Sequence	Length	Modifications	Modified sequence	Carbamidomethyl (C) Probabilities	Oxidation (M) Probabilities	Carbamidomethyl (C) Score Diffs	Oxidation (M) Score Diffs	Acetyl (Protein N-term)	Carbamidomethyl (C)	Oxidation (M)	Missed cleavages	Proteins	Leading proteins	Leading razor protein	Type	Raw file	Experiment	MS/MS m/z	Charge	m/z	Mass	Uncalibrated - Calibrated m/z [ppm]	Uncalibrated - Calibrated m/z [Da]	Mass error [ppm]	Mass error [Da]	Uncalibrated mass error [ppm]	Uncalibrated mass error [Da]	Max intensity m/z 0	Retention time	Retention length	Calibrated retention time	Calibrated retention time start	Calibrated retention time finish	Retention time calibration	Match time difference	Match m/z difference	Match q-value	Match score	Number of data points	Number of scans	Number of isotopic peaks	PIF	Fraction of total spectrum	Base peak fraction	PEP	MS/MS count	MS/MS scan number	MS/MS scan numbers	MS3 scan numbers	Score	Delta score	Combinatorics	Intensity	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Mod. peptide ID	MS/MS IDs	Best MS/MS	Carbamidomethyl (C) site IDs	Oxidation (M) site IDs	Taxonomy IDs	Taxonomy names	Mass deficit
AAAAGRVAR	9	Unmodified	_AAAAGRVAR_					0	0	0			REV__ENST00000419234.8_1_12:112123634-112123766:-|nuORF	REV__ENST00000419234.8_1_12:112123634-112123766:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7512512207031	2	421.751393	841.488233	-0.019077	-8.0458E-06	-0.002027	-8.5487E-07	-0.021104	-8.9006E-06	421.75133706543886	68.225	3.558	68.225	65.927	69.485	0					213	127	3	0	0	0	0.31417	1	17119	17119		6.7232	1.4925	1	517310	+		0	20841	0	0	0	0					0.06114873397223164
AAAARPTRCPP	11	Unmodified	_AAAARPTRCPP_					0	0	0			REV__ENST00000429494.5_1_2:27001385-27001655:+|nuORF	REV__ENST00000429494.5_1_2:27001385-27001655:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7959594726562	2	555.795475	1109.5764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.41	1	115.41	114.91	115.91	0								0	0	0	0.37501	1	29911	29911		2.7352	0	1		+		1	20934	1	1	1	1					0.02599125925530643
AAAASASRI	9	Unmodified	_AAAASASRI_					0	0	0			REV__ENST00000381340.7_1_12:26985723-26986077:-|nuORF	REV__ENST00000381340.7_1_12:26985723-26986077:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.1745300292969	2	409.229959	816.445365	-0.081163	-3.3214E-05	-1.2825	-0.00052484	-1.3637	-0.00055806	409.2292107690304	17.142	0.40957	17.142	17.014	17.424	0					18	14	2	0	0	0	0.25123	1	1525	1525		8.1555	0	1	34542	+		2	20563	2	2	2	2					0.0298005854914436
AAAEASLNK	9	Unmodified	_AAAEASLNK_					0	0	0		ENST00000489327.1_1_2:69705990-69736406:-|nuORF;nc|ENSG00000115977|Q2M2I8-2|AAK1;ENSG00000115977|ENST00000409085|AAK1	ENST00000489327.1_1_2:69705990-69736406:-|nuORF	ENST00000489327.1_1_2:69705990-69736406:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.73492431640625	2	437.735074	873.455596	-0.22656	-9.9173E-05	0.1474	6.4524E-05	-0.079154	-3.4649E-05	437.7350828002827	15.479	0.80407	15.479	15.289	16.093	0					50	27	2	0	0	0	0.19905	1	1084	1084		23.79	6.6769	1	232450			3	2693	3	3	3	3					0.01380621483701816
AAAEASLNK	9	Unmodified	_AAAEASLNK_					0	0	0		ENST00000489327.1_1_2:69705990-69736406:-|nuORF;nc|ENSG00000115977|Q2M2I8-2|AAK1;ENSG00000115977|ENST00000409085|AAK1	ENST00000489327.1_1_2:69705990-69736406:-|nuORF	ENST00000489327.1_1_2:69705990-69736406:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.73492431640625	2	437.735074	873.455596	-0.16648	-7.2874E-05	0.073463	3.2157E-05	-0.093017	-4.0717E-05	437.7350630148289	15.587	0.99499	15.477	15.176	16.171	-0.10981					55	33	2	0	0	0	0.13296	1	1112	1112		33.445	2.1766	1	277060			4	2693	3	3	4	4					0.01380621483701816
AAAGAAMQESF	11	Unmodified	_AAAGAAMQESF_					0	0	0		nc|ENSG00000130956|Q5JVS0-2|HABP4;ENSG00000130956|ENST00000375249|HABP4	nc|ENSG00000130956|Q5JVS0-2|HABP4	nc|ENSG00000130956|Q5JVS0-2|HABP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.768310546875	2	527.237124	1052.45969	0.36206	0.00019089	0.1176	6.2005E-05	0.47966	0.00025289	527.2370059568705	26.576	0.50759	26.537	26.263	26.771	-0.038671					25	17	2	0	0	0	0.33085	1	4332	4332		6.2058	1.8765	1	65210			5	3531	4	4	5	5					-0.06443657084878396
AAAGGAFRP	9	Unmodified	_AAAGGAFRP_					0	0	0		ENSG00000106004|ENST00000222726|HOXA5;ENST00000520854.1_1_7:27181456-27182390:-|nuORF	ENSG00000106004|ENST00000222726|HOXA5	ENSG00000106004|ENST00000222726|HOXA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.8875732421875	2	409.219395	816.424236	-0.25087	-0.00010266	0.081523	3.3361E-05	-0.16935	-6.9299E-05	409.21925926368027	23.433	0.41908	23.433	23.224	23.643	0					25	14	2	0	0	0	0.2451	1	3440	3440		10.824	0	1	75818			6	2046	5	5	6	6					0.008680932402739927
AAAGGAFRP	9	Unmodified	_AAAGGAFRP_					0	0	0		ENSG00000106004|ENST00000222726|HOXA5;ENST00000520854.1_1_7:27181456-27182390:-|nuORF	ENSG00000106004|ENST00000222726|HOXA5	ENSG00000106004|ENST00000222726|HOXA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.8876953125	2	409.219395	816.424236	-0.060446	-2.4736E-05	-0.20424	-8.358E-05	-0.26469	-0.00010832	409.2190440797928	23.511	0.64625	23.439	23.206	23.852	-0.072559					33	22	2	0	0	0	0.21905	1	3484	3484		23.148	0	1	80934			7	2046	5	5	7	7					0.008680932402739927
AAASRKGAP	9	Unmodified	_AAASRKGAP_					0	0	0			REV__ZNF628|p.S162Afs*265|1|0.46|ENSG00000197483|chr19:55481675-55481675|C/-|frameshift_variant	REV__ZNF628|p.S162Afs*265|1|0.46|ENSG00000197483|chr19:55481675-55481675|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.5505676269531	2	414.737951	827.46135	0.17488	7.2529E-05	-0.67429	-0.00027966	-0.49942	-0.00020713	414.73780952119523	19.278	0.59676	19.162	18.947	19.544	-0.11592					28	20	2	0	0	0	0.2451	1	2210	2210		15.847	0	1	55937	+		8	23363	6	6	8	8					0.04071764786044696
AAATATVLK	9	Unmodified	_AAATATVLK_					0	0	0		ENSG00000174307|ENST00000367311|PHLDA3	ENSG00000174307|ENST00000367311|PHLDA3	ENSG00000174307|ENST00000367311|PHLDA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.55450439453125	2	423.258185	844.501818	-0.19782	-8.373E-05	0.47966	0.00020302	0.28184	0.00011929	423.25833290764746	23.439	0.52053	23.351	23.165	23.685	-0.087608					28	18	2	0	0	0	0.24848	1	3416	3416		13.906	3.0821	1	79703			9	6786	7	7	9	9					0.07334686385809164
AAATATVLK	9	Unmodified	_AAATATVLK_					0	0	0		ENSG00000174307|ENST00000367311|PHLDA3	ENSG00000174307|ENST00000367311|PHLDA3	ENSG00000174307|ENST00000367311|PHLDA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.55450439453125	2	423.258185	844.501818	0.01706	7.2206E-06	0.44079	0.00018657	0.45785	0.00019379	423.25835775886475	23.431	0.76588	23.386	23.167	23.933	-0.044867					41	26	2	0	0	0	0.24289	1	3407	3407		13.042	2.2185	1	93244			10	6786	7	7	10	10					0.07334686385809164
AAEDFTIFK	9	Unmodified	_AAEDFTIFK_					0	0	0		nc|ENSG00000163001|Q96G28-2|CFAP36;ENSG00000163001|ENST00000349456|CFAP36	nc|ENSG00000163001|Q96G28-2|CFAP36	nc|ENSG00000163001|Q96G28-2|CFAP36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2899169921875	2	521.266207	1040.51786	0.57137	0.00029784	-0.18313	-9.5461E-05	0.38824	0.00020238	521.2660769006088	54.269	0.51781	54.253	54.057	54.575	-0.015923					38	17	3	0	0	0	0.11018	1	12871	12871		53.404	28.73	1	589860			11	5639	8	8	11	11					-0.0007765216794268781
AAENLPVFIF	10	Unmodified	_AAENLPVFIF_					0	0	0			REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.30712890625	2	560.8055	1119.59645	-0.08951	-5.0198E-05	2.5476	0.0014287	2.4581	0.0013785	561.3090155430042	98.654	0.27464	98.654	98.561	98.836	0					35	30	2	0	0	0	0.31691	1	26411	26411		9.3831	5.0539	1	41567	+		12	14784	9	9	12	12					0.04143200137150416
AAENLPVFIF	10	Unmodified	_AAENLPVFIF_					0	0	0			REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.8055	1119.59645	0.15085	8.4596E-05	1.7033	0.00095525	1.8542	0.0010398	561.3088985838988	98.586	0.089951	98.647	98.583	98.673	0.061516	0.073734	-0.00089648	NaN	9.3831	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78905	+		13	14784	9	9							0.04143200137150416
AAENLPVFIF	10	Unmodified	_AAENLPVFIF_					0	0	0			REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	560.8055	1119.59645	0.23218	0.00013021	3.6027	0.0020204	3.8349	0.0021506	561.3095402758228	98.426	0.048767	98.419	98.38	98.428	-0.0068207	-0.15445	0.0012338	NaN	9.3831	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110330	+		14	14784	9	9							0.04143200137150416
AAERLERE	8	Unmodified	_AAERLERE_					0	0	0			REV__ENST00000449997.1_1_7:44097442-44098349:+|nuORF	REV__ENST00000449997.1_1_7:44097442-44098349:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7646179199219	2	487.256705	972.498858	0.069179	3.3708E-05	0.25483	0.00012417	0.32401	0.00015788	487.25676015828174	18.149	0.43578	18.091	17.819	18.255	-0.058174					28	15	2	0	0	0	0.34313	1	1823	1823		6.7232	0	1	91189	+		15	15805	10	10	13	13					0.011508112610044918
AAERWPSAV	9	Unmodified	_AAERWPSAV_					0	0	0		ENST00000313648.10_2_17:25958268-25958325:+|nuORF	ENST00000313648.10_2_17:25958268-25958325:+|nuORF	ENST00000313648.10_2_17:25958268-25958325:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.28668212890625	2	493.756341	985.498129	0.30753	0.00015185	2.544	0.0012561	2.8516	0.001408	493.75730013820527	22.007	0.28575	22.007	21.966	22.252	0					13	9	2	0	0	0	0.25706	1	3053	3053		3.5965	0	1	51268			16	9333	11	11	14	14					0.004800166119480309
AAEVKGRRSRS	11	Unmodified	_AAEVKGRRSRS_					0	0	0			REV__KMT2B|p.D1819Mfs*70|1|0.11|ENSG00000272333|chr19:35731923-35731941|AGGACCCCCCACTGGACAC/-|frameshift_variant	REV__KMT2B|p.D1819Mfs*70|1|0.11|ENSG00000272333|chr19:35731923-35731941|AGGACCCCCCACTGGACAC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8488159179688	2	608.847084	1215.67962	0.50749	0.00030899	-0.12153	-7.3996E-05	0.38596	0.00023499	608.8470185079906	84.018	2.8329	84.001	83.288	86.121	-0.016823					302	115	3	0	0	0	0.45108	1	22529	22529		4.5289	0.58447	1	2678900	+		17	19315	12	12	15	15					0.08040329637719879
AAFDGGFTVK	10	Unmodified	_AAFDGGFTVK_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7587585449219	2	506.758549	1011.50255	0.41812	0.00021188	0.088036	4.4613E-05	0.50615	0.0002565	506.75850322954403	45.151	1.0858	45.151	44.802	45.888	0					113	39	4	0	0	0	0.00042009	2	10058	10058;10109		128.57	86.733	1	5088300			18	1793	13	13	16;17	16					-0.002745189651363944
AAFDGGFTVK	10	Unmodified	_AAFDGGFTVK_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7586669921875	2	506.758549	1011.50255	0.3766	0.00019084	0.079173	4.0122E-05	0.45577	0.00023096	506.75848718735045	44.903	0.97732	44.972	44.651	45.628	0.068573					104	34	5	0	0	0	2.7564E-05	2	9979	9979;10032		139.78	89.849	1	6060900			19	1793	13	13	18;19	18					-0.002745189651363944
AAFDGGFTVK	10	Unmodified	_AAFDGGFTVK_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;ENST00000564259.1_1_16:48382051-48395504:+|nuORF	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.75860595703125	2	506.758549	1011.50255	0.45811	0.00023215	0.0038579	1.955E-06	0.46197	0.00023411	506.75845074373257	44.921	0.88379	44.996	44.643	45.526	0.075047					107	32	5	0	0	0	2.7564E-05	2	9975	9975;10027		139.78	89.849	1	5759100			20	1793	13	13	20;21	20					-0.002745189651363944
AAFFTAVPIL	10	Unmodified	_AAFFTAVPIL_					0	0	0		nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1;nc|ENSG00000101187|Q96BD0-3|SLCO4A1	nc|ENSG00000101187|Q96BD0-4|SLCO4A1	nc|ENSG00000101187|Q96BD0-4|SLCO4A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3046875	2	525.305136	1048.59572	0.59057	0.00031023	-0.19911	-0.00010459	0.39145	0.00020563	525.304886547296	85.902	1.6017	85.986	85.514	87.116	0.084251					178	62	4	0	0	0	0.2593	1	22730	22730		25.399	3.6527	1	2591200			21	1672	14	14	22	22					0.07336405488103992
AAFFTAVPIL	10	Unmodified	_AAFFTAVPIL_					0	0	0		nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1;nc|ENSG00000101187|Q96BD0-3|SLCO4A1	nc|ENSG00000101187|Q96BD0-4|SLCO4A1	nc|ENSG00000101187|Q96BD0-4|SLCO4A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3048095703125	2	525.305136	1048.59572	0.69104	0.00036301	-0.27964	-0.0001469	0.4114	0.00021611	525.3048418506993	85.923	1.6674	85.914	85.407	87.075	-0.0090027					169	61	4	0	0	0	0.2593	1	22771	22771		25.399	3.6527	1	2408900			22	1672	14	14	23	23					0.07336405488103992
AAFFTGQIFTK	11	Unmodified	_AAFFTGQIFTK_					0	0	0		nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	615.8287963867188	2	615.829506	1229.64446	0.20064	0.00012356	-0.20442	-0.00012589	-0.0037799	-2.3278E-06	615.8292483938216	63.06	0.5087	63.06	62.832	63.34	0					37	18	3	0	0	0	0.00051129	1	15574	15574		103.69	82.154	1	404960			23	291	15	15	24	24					0.03882274057173163
AAFFTGQIFTK	11	Unmodified	_AAFFTGQIFTK_					0	0	0		nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	615.829506	1229.64446	0.22699	0.00013979	0.0018147	1.1175E-06	0.22881	0.00014091	615.8293099213914	62.92	0.5195	63.015	62.736	63.256	0.095722	-0.025869	-9.9427E-06	NaN	103.69	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393970			24	291	15	15							0.03882274057173163
AAFFTGQIFTK	11	Unmodified	_AAFFTGQIFTK_					0	0	0		nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	615.829506	1229.64446	0.18095	0.00011143	0.17637	0.00010861	0.35731	0.00022004	615.8296053641737	63.057	0.54684	63.048	62.804	63.351	-0.0085526	0.006921	0.00020504	NaN	103.69	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476010			25	291	15	15							0.03882274057173163
AAFGGTFKK	9	Unmodified	_AAFGGTFKK_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;nc|ENSG00000100979|P55058-4|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.7581787109375	2	463.758352	925.502152	-0.24228	-0.00011236	-0.92846	-0.00043058	-1.1707	-0.00054294	463.7579176196656	22.922	1.0354	22.922	22.533	23.569	0					84	35	3	0	0	0	0.0037449	1	3304	3304		96.367	60.24	1	631050			26	1650	16	16	25	25					0.036421061056557846
AAFGGTFKK	9	Unmodified	_AAFGGTFKK_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;nc|ENSG00000100979|P55058-4|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7581481933594	2	463.758352	925.502152	-0.17665	-8.1923E-05	-0.9337	-0.00043301	-1.1103	-0.00051493	463.75788641930586	23.096	1.0309	23.008	22.568	23.599	-0.087608					88	36	3	0	0	0	0.0028542	2	3335	3335;3386		103.42	67.292	1	725790			27	1650	16	16	26;27	26					0.036421061056557846
AAFGGTFKK	9	Unmodified	_AAFGGTFKK_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;nc|ENSG00000100979|P55058-4|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7581787109375	2	463.758352	925.502152	0.11874	5.5068E-05	-1.224	-0.00056766	-1.1053	-0.00051259	463.7577474838424	23.055	1.1431	23.01	22.616	23.759	-0.044867					89	40	3	0	0	0	0.0041491	1	3335	3335		93.166	64.084	1	747150			28	1650	16	16	28	28					0.036421061056557846
AAFRTWPSL	9	Unmodified	_AAFRTWPSL_					0	0	0			REV__ENST00000409609.5_1_2:189158712-189158898:+|nuORF	REV__ENST00000409609.5_1_2:189158712-189158898:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.285400390625	2	524.782359	1047.55016	0.76346	0.00040065	-0.50089	-0.00026286	0.26257	0.00013779	524.7820461878877	20.792	0.62543	20.682	20.466	21.091	-0.11003					47	21	3	0	0	0	0.34809	1	2715	2715		1.6526	1.6526	1	160550	+		29	20763	17	17	29	29					0.028291800257193245
AAFTTAYLF	9	Unmodified	_AAFTTAYLF_					0	0	0		nc|ENSG00000137204|Q9Y694-3|SLC22A7;nc|ENSG00000137204|Q9Y694-4|SLC22A7;nc|ENSG00000137204|Q9Y694-2|SLC22A7;ENSG00000137204|ENST00000372585|SLC22A7	nc|ENSG00000137204|Q9Y694-3|SLC22A7	nc|ENSG00000137204|Q9Y694-3|SLC22A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.75799560546875	2	502.758018	1003.50148	0.21068	0.00010592	-0.025805	-1.2974E-05	0.18487	9.2947E-05	502.757906475167	73.508	0.66148	73.562	73.2	73.861	0.053833					68	23	4	0	0	0	0.155	1	18788	18788		30.225	1.738	1	929640			30	12722	18	18	30	30					-0.00012733334040149202
AAGQVGVNQQ	10	Unmodified	_AAGQVGVNQQ_					0	0	0			REV__ENSG00000171940|ENST00000371471|ZNF217	REV__ENSG00000171940|ENST00000371471|ZNF217	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7403869628906	2	486.24888	970.483208	0.38051	0.00018502	-0.081735	-3.9744E-05	0.29878	0.00014528	486.24894994125174	21.646	0.39062	21.546	21.244	21.635	-0.10034					17	13	2	0	0	0	0.31889	1	2846	2846		6.2058	0.47393	1	32141	+		31	17680	19	19	31	31					-0.0032147525605523697
AAHARRQR	8	Unmodified	_AAHARRQR_					0	0	0		ENST00000526924.5_1_17:42827021-42827294:+|nuORF	ENST00000526924.5_1_17:42827021-42827294:+|nuORF	ENST00000526924.5_1_17:42827021-42827294:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2791748046875	2	483.278641	964.542729	0.43609	0.00021075	-0.56505	-0.00027308	-0.12896	-6.2324E-05	483.27874672542566	84.92	0.75398	84.92	84.663	85.417	0					76	28	4	0	0	0	0.45169	1	22328	22328		5.2307	0	1	787010			32	11564	20	20	32	32					0.059038852686512655
AAHARRQR	8	Unmodified	_AAHARRQR_					0	0	0		ENST00000526924.5_1_17:42827021-42827294:+|nuORF	ENST00000526924.5_1_17:42827021-42827294:+|nuORF	ENST00000526924.5_1_17:42827021-42827294:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2789001464844	2	483.278641	964.542729	0.49345	0.00023847	-0.51006	-0.0002465	-0.016607	-8.026E-06	483.27875259472586	84.963	0.82051	84.95	84.63	85.451	-0.012833					78	32	3	0	0	0	0.4419	2	22282	22282;22334		8.5933	2.2392	1	771840			33	11564	20	20	33;34	33					0.059038852686512655
AAHGCSWL	8	Unmodified	_AAHGCSWL_					0	0	0		GPR78|p.L142H|1|0.24|ENSG00000155269|chr4:8581407-8581407|T/A|missense_variant	GPR78|p.L142H|1|0.24|ENSG00000155269|chr4:8581407-8581407|T/A|missense_variant	GPR78|p.L142H|1|0.24|ENSG00000155269|chr4:8581407-8581407|T/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.6922302246094	2	422.692155	843.369758	-0.074268	-3.1392E-05	0.19872	8.3998E-05	0.12445	5.2606E-05	422.6923588114514	67.299	0.62556	67.299	67.048	67.673	0					46	21	3	0	0	0	0.45015	1	16884	16884		5.7604	2.8712	1	600850			34	12350	21	21	35	35					-0.05819241902804606
AAHGCSWL	8	Unmodified	_AAHGCSWL_					0	0	0		GPR78|p.L142H|1|0.24|ENSG00000155269|chr4:8581407-8581407|T/A|missense_variant	GPR78|p.L142H|1|0.24|ENSG00000155269|chr4:8581407-8581407|T/A|missense_variant	GPR78|p.L142H|1|0.24|ENSG00000155269|chr4:8581407-8581407|T/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.69232177734375	2	422.692155	843.369758	-0.13679	-5.7818E-05	0.35857	0.00015156	0.22178	9.3746E-05	422.6923216889787	67.339	0.83598	67.322	67.035	67.871	-0.016304					62	28	4	0	0	0	0.45015	1	16874	16874		5.7604	2.8712	1	545960			35	12350	21	21	36	36					-0.05819241902804606
AAHGCSWL	8	Unmodified	_AAHGCSWL_					0	0	0		GPR78|p.L142H|1|0.24|ENSG00000155269|chr4:8581407-8581407|T/A|missense_variant	GPR78|p.L142H|1|0.24|ENSG00000155269|chr4:8581407-8581407|T/A|missense_variant	GPR78|p.L142H|1|0.24|ENSG00000155269|chr4:8581407-8581407|T/A|missense_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	422.692155	843.369758	-0.13679	-5.7818E-05	0.35857	0.00015156	0.22178	9.3746E-05	422.6923216889787	67.339	0.83598	67.322	67.035	67.871	-0.016304	0.009333	4.382E-05	NaN	5.7604	62	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	545960			36	12350	21	21							-0.05819241902804606
AAHYVSPPGF	10	Unmodified	_AAHYVSPPGF_					0	0	0			REV__nc|ENSG00000290770|Q5VZR4|MFSD14CP	REV__nc|ENSG00000290770|Q5VZR4|MFSD14CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2589721679688	2	523.258717	1044.50288	0.45436	0.00023775	-0.12992	-6.7984E-05	0.32443	0.00016976	523.2586193029987	44.041	1.493	44.041	43.576	45.069	0					142	54	4	0	0	0	0.14015	2	9678	9678;9724		39.957	7.6518	1	5397000	+		37	23253	22	22	37;38	37					-0.01759099245282414
AAHYVSPPGF	10	Unmodified	_AAHYVSPPGF_					0	0	0			REV__nc|ENSG00000290770|Q5VZR4|MFSD14CP	REV__nc|ENSG00000290770|Q5VZR4|MFSD14CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2589111328125	2	523.258717	1044.50288	0.48263	0.00025254	-0.19357	-0.00010129	0.28906	0.00015126	523.2586298126422	43.634	1.7014	43.711	43.401	45.102	0.077515					136	62	4	0	0	0	0.14015	4	9565	9565;9613;9661;9710		39.957	7.6518	1	5472200	+		38	23253	22	22	39;40;41;42	39					-0.01759099245282414
AAHYVSPPGF	10	Unmodified	_AAHYVSPPGF_					0	0	0			REV__nc|ENSG00000290770|Q5VZR4|MFSD14CP	REV__nc|ENSG00000290770|Q5VZR4|MFSD14CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2589111328125	2	523.258717	1044.50288	0.50757	0.00026559	-0.18772	-9.8227E-05	0.31985	0.00016736	523.2585861637874	43.699	1.3542	43.783	43.297	44.652	0.083996					128	49	3	0	0	0	0.14015	3	9563	9563;9612;9659		39.957	7.6518	1	5603400	+		39	23253	22	22	43;44;45	43					-0.01759099245282414
AAIPLLALAG	10	Unmodified	_AAIPLLALAG_					0	0	0		ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5	ENSG00000182544|ENST00000329548|MFSD5	ENSG00000182544|ENST00000329548|MFSD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2918701171875	2	455.292028	908.569503	0.30767	0.00014008	-0.067266	-3.0626E-05	0.24041	0.00010946	455.2919002092406	40.513	1.2302	40.606	40.254	41.484	0.09267					101	45	3	0	0	0	0.35073	1	8592	8592		12.532	0	1	1140200			40	7298	23	23	46	46					0.11156136316594711
AAIPLLALAG	10	Unmodified	_AAIPLLALAG_					0	0	0		ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5	ENSG00000182544|ENST00000329548|MFSD5	ENSG00000182544|ENST00000329548|MFSD5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2920227050781	2	455.292028	908.569503	0.16338	7.4384E-05	-0.11544	-5.256E-05	0.047933	2.1824E-05	455.29197911674146	40.53	1.279	40.629	40.146	41.425	0.099407					133	46	6	0	0	0	0.30586	1	8624	8624		12.532	0	1	1097800			41	7298	23	23	47	47					0.11156136316594711
AAIPLPLVK	9	Unmodified	_AAIPLPLVK_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.59075927734375	2	461.310221	920.605889	0.082858	3.8223E-05	0.081923	3.7792E-05	0.16478	7.6015E-05	461.3101229207834	57.753	0.61636	57.735	57.443	58.06	-0.017197					35	22	2	0	0	0	0.25938	1	13886	13886		4.3292	2.2695	1	379190			42	3868	24	24	48	48					0.14241013213313636
AAIPLPLVK	9	Unmodified	_AAIPLPLVK_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	461.310221	920.605889	0.012016	5.5432E-06	0.18994	8.7623E-05	0.20196	9.3166E-05	461.3102259583718	57.848	0.60939	57.848	57.578	58.187	0	0.035748	7.9847E-05	NaN	4.3292	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300950			43	3868	24	24							0.14241013213313636
AAIPLPLVK	9	Unmodified	_AAIPLPLVK_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	461.310221	920.605889	0.097633	4.5039E-05	0.0568	2.6202E-05	0.15443	7.1241E-05	461.3102011165399	57.768	0.54128	57.854	57.571	58.112	0.085621	0.041273	-4.2994E-05	NaN	4.3292	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339680			44	3868	24	24							0.14241013213313636
AALAAHARE	9	Unmodified	_AALAAHARE_					0	0	0			REV__ENSG00000173404|ENST00000310227|INSM1	REV__ENSG00000173404|ENST00000310227|INSM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.20794677734375	2	455.248683	908.482814	-0.029381	-1.3375E-05	-0.37877	-0.00017244	-0.40815	-0.00018581	455.24857162375577	17.045	0.844	16.928	16.445	17.289	-0.11739					57	30	3	0	0	0	0.25811	1	1439	1439		5.2307	2.6532	1	51019	+		45	17779	25	25	49	49					0.024911498147389466
AALAAHARE	9	Unmodified	_AALAAHARE_					0	0	0			REV__ENSG00000173404|ENST00000310227|INSM1	REV__ENSG00000173404|ENST00000310227|INSM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	455.248683	908.482814	0.20295	9.2394E-05	-0.76659	-0.00034899	-0.56364	-0.00025659	455.2483938129538	16.972	0.56337	16.912	16.648	17.211	-0.060429	-0.029119	-0.00024245	NaN	5.2307	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66203	+		46	17779	25	25							0.024911498147389466
AALAARGAAL	10	Unmodified	_AALAARGAAL_					0	0	0		ENST00000361757.7_1_19:1108210-1108570:-|nuORF	ENST00000361757.7_1_19:1108210-1108570:-|nuORF	ENST00000361757.7_1_19:1108210-1108570:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.7692565917969	2	442.769252	883.52395	-0.18862	-8.3515E-05	0.39658	0.00017559	0.20796	9.2079E-05	442.7693138373991	14.253	0.71885	14.148	13.873	14.592	-0.10466					61	24	4	0	0	0	0.33817	1	720	720		14.838	1.7958	1	754680			47	9697	26	26	50	50					0.0775291085420804
AALAKAIEK	9	Unmodified	_AALAKAIEK_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.78704833984375	2	457.78711	913.559667	-0.063085	-2.888E-05	-0.33056	-0.00015133	-0.39364	-0.00018021	457.78705240005934	19.516	0.55643	19.516	19.211	19.768	0					51	19	3	0	0	0	0.0048951	3	2280	2233;2280;2327		87.258	43.486	1	347160			48	2226	27	27	51;52;53	52					0.09942948311231703
AALAKAIEK	9	Unmodified	_AALAKAIEK_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7871398925781	2	457.78711	913.559667	0.11006	5.0384E-05	-0.75116	-0.00034387	-0.6411	-0.00029349	457.78696042474326	19.651	0.60922	19.535	19.26	19.869	-0.11592					59	20	4	0	0	0	0.01909	2	2333	2279;2333		65.474	25.524	1	335150			49	2226	27	27	54;55	55					0.09942948311231703
AALAKAIEK	9	Unmodified	_AALAKAIEK_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.78717041015625	2	457.78711	913.559667	0.20281	9.2844E-05	-0.77697	-0.00035569	-0.57416	-0.00026284	457.7869052192344	19.615	0.62406	19.559	19.253	19.877	-0.055693					55	21	3	0	0	0	0.01909	2	2321	2273;2321		65.474	33.168	1	372470			50	2226	27	27	56;57	57					0.09942948311231703
AALDIAMIK	9	Oxidation (M)	_AALDIAM(Oxidation (M))IK_		AALDIAM(1)IK		AALDIAM(64)IK	0	0	1		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;ENST00000508303.5_1_12:112186258-112194701:+|nuORF;ENST00000547491.1_1_12:112186933-112194274:+|nuORF;ENST00000512792.2_1_12:112191278-112193633:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2726135253906	2	481.272978	960.531403	0.49639	0.0002389	-0.97054	-0.0004671	-0.47415	-0.00022819	481.2723745544084	45.904	0.41807	45.904	45.72	46.138	0					34	14	3	0	0	0	0.020233	1	10302	10302		63.961	12.331	1	660950			51	2358	28	28	58	58		291			0.04955882339629625
AALDIAMIK	9	Oxidation (M)	_AALDIAM(Oxidation (M))IK_					0	0	1		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;ENST00000508303.5_1_12:112186258-112194701:+|nuORF;ENST00000547491.1_1_12:112186933-112194274:+|nuORF;ENST00000512792.2_1_12:112191278-112193633:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	481.272978	960.531403	0.10579	5.0913E-05	-0.54292	-0.00026129	-0.43713	-0.00021038	481.27254059569646	45.807	0.53082	45.867	45.619	46.15	0.059837	-0.010879	0.00034522	NaN	63.961	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	675290			52	2358	28	28				291			0.04955882339629625
AALDIAMIK	9	Oxidation (M)	_AALDIAM(Oxidation (M))IK_					0	0	1		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;ENST00000508303.5_1_12:112186258-112194701:+|nuORF;ENST00000547491.1_1_12:112186933-112194274:+|nuORF;ENST00000512792.2_1_12:112191278-112193633:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	481.272978	960.531403	0.47019	0.00022629	-1.1565	-0.00055662	-0.68636	-0.00033033	481.27227355756605	45.798	0.55273	45.863	45.647	46.2	0.065048	-0.014847	-0.00024542	NaN	63.961	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	753700			53	2358	28	28				291			0.04955882339629625
AALEKQEK	8	Unmodified	_AALEKQEK_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2507019042969	2	458.758549	915.502546	0.067351	3.0898E-05	-0.17639	-8.0918E-05	-0.10903	-5.002E-05	458.758698491158	24.049	0.3602	23.976	23.791	24.151	-0.072559					15	11	2	0	0	0	0.3439	1	3600	3600		2.8892	0	1	33562			54	1236	29	29	59	59					0.041414810348555875
AALGLHSPLS	10	Unmodified	_AALGLHSPLS_					0	0	0		ENST00000366734.5_1_1:228296327-228296483:-|nuORF	ENST00000366734.5_1_1:228296327-228296483:-|nuORF	ENST00000366734.5_1_1:228296327-228296483:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.6684265136719	2	483.274367	964.53418	0.30766	0.00014869	-0.66492	-0.00032134	-0.35726	-0.00017265	483.27370613287013	21.451	0.51177	21.401	21.15	21.661	-0.049377					25	17	2	0	0	0	0.31629	1	2843	2843		10.074	1.4806	1	46603			55	9712	30	30	60	60					0.05049473788801606
AALHHLVLT	9	Unmodified	_AALHHLVLT_					0	0	0		nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2	nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7997131347656	2	487.792727	973.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.11	1	115.13	114.63	115.63	0.018738								0	0	0	0.24522	1	29917	29917		7.9102	0	1				56	8557	31	31	61	61					0.08305770405354451
AALLFKMVV	9	Unmodified	_AALLFKMVV_					0	0	0			REV__ENSG00000150403|ENST00000434316|TMCO3	REV__ENSG00000150403|ENST00000434316|TMCO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.3041076660156	2	496.304081	990.59361	0.41687	0.0002069	-0.18064	-8.9651E-05	0.23624	0.00011725	496.30387669744533	74.068	3.1764	74.068	73.191	76.367	0					302	112	4	0	0	0	0.32733	1	19482	19482		4.756	0.42677	1	4670700	+		57	16496	32	32	62	62					0.09793653478629949
AALLFKMVV	9	Unmodified	_AALLFKMVV_					0	0	0			REV__ENSG00000150403|ENST00000434316|TMCO3	REV__ENSG00000150403|ENST00000434316|TMCO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.30426025390625	2	496.304081	990.59361	0.41396	0.00020545	-0.033477	-1.6615E-05	0.38048	0.00018883	496.30394259333224	74.198	1.8802	74.168	73.18	75.06	-0.030663					230	67	4	0	0	0	0.32733	1	18897	18897		4.756	2.1785	1	4288300	+		58	16496	32	32	63	63					0.09793653478629949
AALLIPVVK	9	Unmodified	_AALLIPVVK_					0	0	0			REV__nc|ENSG00000185518|Q7L1I2-2|SV2B	REV__nc|ENSG00000185518|Q7L1I2-2|SV2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.3185119628906	2	462.318046	922.621539	0.30403	0.00014056	0.8044	0.00037189	1.1084	0.00051245	462.31821874116025	56.445	0.66414	56.445	56.212	56.876	0					53	24	3	0	0	0	0.11517	1	13539	13539		36.044	0	1	1254200	+		59	18386	33	33	64	64					0.15713299730373365
AALLIPVVK	9	Unmodified	_AALLIPVVK_					0	0	0			REV__nc|ENSG00000185518|Q7L1I2-2|SV2B	REV__nc|ENSG00000185518|Q7L1I2-2|SV2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.318603515625	2	462.318046	922.621539	0.47113	0.00021781	0.63348	0.00029287	1.1046	0.00051068	462.3181812837629	56.378	0.55794	56.456	56.221	56.778	0.078674					46	20	3	0	0	0	0.044952	1	13521	13521		54.774	0	1	1243100	+		60	18386	33	33	65	65					0.15713299730373365
AALLIPVVK	9	Unmodified	_AALLIPVVK_					0	0	0			REV__nc|ENSG00000185518|Q7L1I2-2|SV2B	REV__nc|ENSG00000185518|Q7L1I2-2|SV2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.31866455078125	2	462.318046	922.621539	0.83863	0.00038772	0.33656	0.0001556	1.1752	0.00054332	462.31804257315486	56.38	0.46017	56.361	56.159	56.619	-0.019081					37	16	3	0	0	0	0.23007	2	13555	13507;13555		19.257	0	1	1983400	+		61	18386	33	33	66;67	67					0.15713299730373365
AALLIPVVK	9	Unmodified	_AALLIPVVK_					0	0	0			REV__nc|ENSG00000185518|Q7L1I2-2|SV2B	REV__nc|ENSG00000185518|Q7L1I2-2|SV2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	462.318046	922.621539	0.30403	0.00014056	0.8044	0.00037189	1.1084	0.00051245	462.31821874116025	56.445	0.66414	56.445	56.212	56.876	0	0.024113	0.00012958	NaN	54.774	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1254200	+		62	18386	33	33							0.15713299730373365
AALLIPVVK	9	Unmodified	_AALLIPVVK_					0	0	0			REV__nc|ENSG00000185518|Q7L1I2-2|SV2B	REV__nc|ENSG00000185518|Q7L1I2-2|SV2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	462.318046	922.621539	0.47113	0.00021781	0.63348	0.00029287	1.1046	0.00051068	462.3181812837629	56.378	0.55794	56.456	56.221	56.778	0.078674	0.035549	-2.8459E-05	NaN	54.774	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1243100	+		63	18386	33	33							0.15713299730373365
AALLIPVVK	9	Unmodified	_AALLIPVVK_					0	0	0			REV__nc|ENSG00000185518|Q7L1I2-2|SV2B	REV__nc|ENSG00000185518|Q7L1I2-2|SV2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	462.318046	922.621539	0.83863	0.00038772	0.33656	0.0001556	1.1752	0.00054332	462.31804257315486	56.38	0.46017	56.361	56.159	56.619	-0.019081	-0.059661	-0.000303	NaN	54.774	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1983400	+		64	18386	33	33							0.15713299730373365
AALLQYLAP	9	Unmodified	_AALLQYLAP_					0	0	0		ENST00000573189.2_1_16:72039593-72040031:-|nuORF	ENST00000573189.2_1_16:72039593-72040031:-|nuORF	ENST00000573189.2_1_16:72039593-72040031:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7877197265625	2	480.28166	958.548768	0.36965	0.00017753	-2.2686	-0.0010896	-1.899	-0.00091203	480.2804954716448	40.694	0.28728	40.787	40.718	41.005	0.09267					20	10	3	0	0	0	0.1659	1	8705	8705		36.044	13.308	1	160270			65	12032	34	34	68	68					0.06783545936923474
AALPSKLLP	9	Unmodified	_AALPSKLLP_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2921142578125	2	455.292028	908.569503	0.23152	0.00010541	-0.10619	-4.8348E-05	0.12533	5.7063E-05	455.2919048485199	40.569	1.2203	40.569	40.161	41.382	0					107	44	3	0	0	0	0.26612	2	8618	8618;8707		13.906	1.3745	1	1041000	+		66	14025	35	35	69;70	69					0.11156136316617449
AALPSKLLP	9	Unmodified	_AALPSKLLP_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.29193115234375	2	455.292028	908.569503	0.30767	0.00014008	-0.067266	-3.0626E-05	0.24041	0.00010946	455.2919002092406	40.513	1.2302	40.606	40.254	41.484	0.09267					101	45	3	0	0	0	0.26612	1	8642	8642		13.906	1.3745	1	1140200	+		67	14025	35	35	71	71					0.11156136316617449
AALQPFPT	8	Unmodified	_AALQPFPT_					0	0	0			REV__ENST00000334049.10_1_18:11689369-11689480:+|nuORF	REV__ENST00000334049.10_1_18:11689369-11689480:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.7314758300781	2	422.731803	843.449054	0.08947	3.7822E-05	1.1787	0.00049829	1.2682	0.00053611	422.73163487787195	79.287	1.8981	79.349	78.229	80.127	0.061417					101	76	2	0	0	0	0.37937	1	20522	20522		21.747	0	1	304510	+		68	20056	36	36	72	72					0.021067283229854183
AALSPLCL	8	Carbamidomethyl (C)	_AALSPLC(Carbamidomethyl (C))L_	AALSPLC(1)L		AALSPLC(47)L		0	1	0			REV__ENST00000307741.10_1_19:2813607-2814732:+|nuORF	REV__ENST00000307741.10_1_19:2813607-2814732:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.731689453125	2	422.733489	843.452425	0.074789	3.1616E-05	-2.6091	-0.0011029	-2.5343	-0.0010713	422.73163017611944	79.363	2.4084	79.363	78.249	80.657	0					120	93	2	0	0	0	0.17761	1	20578	20578		46.921	6.4723	1	391060	+		69	19872	37	37	73	73	30				0.02443655105344078
AALTFTVF	8	Unmodified	_AALTFTVF_					0	0	0		ENSG00000197177|ENST00000392607|ADGRA1;nc|ENSG00000197177|Q86SQ6-1|ADGRA1	ENSG00000197177|ENST00000392607|ADGRA1	ENSG00000197177|ENST00000392607|ADGRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.2513122558594	2	435.242004	868.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.65	1	72.65	72.15	73.15	0								0	0	0	0.36169	1	18530	18530		9.3474	0	1				70	7941	38	38	74	74					0.029958989827946425
AALVRWPK	8	Unmodified	_AALVRWPK_					0	0	0			REV__ENST00000481972.5_1_3:58292052-58303220:+|nuORF	REV__ENST00000481972.5_1_3:58292052-58303220:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2473449707031	2	470.789987	939.565421	-0.8712	-0.00041015	2.0624	0.00097095	1.1912	0.0005608	470.7907899963262	34.508	0.59071	34.508	34.277	34.868	0					33	20	2	0	0	0	0.34319	1	6857	6857		5.7604	3.1829	1	157490	+		71	21435	39	39	75	75					0.09322091613557859
AAMDAVCAK	9	Unmodified	_AAMDAVCAK_					0	0	0		ENST00000536939.1_1_11:63706535-63720038:+|nuORF;ENST00000338447.10_1_11:63706445-63713674:+|nuORF;NAA40|p.K170Rfs*5|1|0.1|ENSG00000110583|chr11:63953981-63953982|-/AA|frameshift_variant;ENSG00000110583|ENST00000377793|NAA40	ENST00000536939.1_1_11:63706535-63720038:+|nuORF	ENST00000536939.1_1_11:63706535-63720038:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.1968688964844	2	440.206781	878.399009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.067	1	24.028	23.528	24.528	-0.038927								0	0	0	0.2575	1	3636	3636		3.9444	1.3669	1				72	2316	40	40	76	76					-0.04505465668819397
AAMLDTVVFK	10	Oxidation (M)	_AAM(Oxidation (M))LDTVVFK_		AAM(1)LDTVVFK		AAM(160)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.796875	2	555.796817	1109.57908	0.42115	0.00023407	-0.52115	-0.00028965	-0.099998	-5.5578E-05	555.7975990676753	48.928	3.9135	48.928	48.298	52.211	0					381	143	5	0	0	0	1.5864E-08	8	11108	11108;11158;11208;11251;11293;11334;11379;11428		160.69	114.95	1	136240000			73	2621	41	41	77;78;79;80;81;82;83;84	77		326			0.028675365398157737
AAMLDTVVFK	10	Oxidation (M)	_AAM(Oxidation (M))LDTVVFK_		AAM(1)LDTVVFK		AAM(40)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.813720703125	2	555.796817	1109.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.056	1	62.056	61.556	62.556	0								0	0	0	0.19781	1	15286	15286		40.239	18.493	1				74	2621	41	41	85	85		326			0.028675365398157737
AAMLDTVVFK	10	Oxidation (M)	_AAM(Oxidation (M))LDTVVFK_		AAM(1)LDTVVFK		AAM(160)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7969970703125	2	555.796817	1109.57908	0.44633	0.00024807	-0.54346	-0.00030205	-0.09713	-5.3984E-05	555.7975851000024	48.901	3.2566	48.946	48.363	51.62	0.044891					359	120	5	0	0	0	1.5864E-08	9	11107	11107;11150;11191;11234;11279;11328;11379;11428;12025		160.69	114.95	1	137710000			75	2621	41	41	86;87;88;89;90;91;92;93;94	86		326			0.028675365398157737
AAMLDTVVFK	10	Oxidation (M)	_AAM(Oxidation (M))LDTVVFK_		AAM(1)LDTVVFK		AAM(40)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2745971679688	2	555.796817	1109.57908	0.3311	0.00018403	-0.35111	-0.00019515	-0.020008	-1.112E-05	555.7973615017518	57.263	0.33308	57.347	57.102	57.435	0.083645					17	11	2	0	0	0	0.23997	1	13788	13788		40.239	19.786	1	225020			76	2621	41	41	95	95		326			0.028675365398157737
AAMLDTVVFK	10	Oxidation (M)	_AAM(Oxidation (M))LDTVVFK_		AAM(1)LDTVVFK		AAM(170)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7969360351562	2	555.796817	1109.57908	0.21555	0.0001198	-0.3035	-0.00016868	-0.087947	-4.8881E-05	555.7977243986943	48.861	5.1605	48.893	48.309	53.469	0.032047					413	191	5	0	0	0	5.2621E-09	8	11081	11081;11129;11172;11220;11264;11307;11351;11393		173.69	124.13	1	142360000			77	2621	41	41	96;97;98;99;100;101;102;103	96		326			0.028675365398157737
AAMNMGRPFQK	11	2 Oxidation (M)	_AAM(Oxidation (M))NM(Oxidation (M))GRPFQK_		AAM(1)NM(1)GRPFQK		AAM(48)NM(48)GRPFQK	0	0	2		nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4;ENST00000521120.1_1_12:50835423-50848201:+|nuORF	nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.20574951171875	3	428.20588	1281.59581	-0.22485	-9.6283E-05	0.16834	7.2086E-05	-0.056509	-2.4197E-05	428.20606145584156	15.885	0.89494	15.823	15.519	16.414	-0.062534					82	30	4	0	0	0	0.067879	1	1146	1146		48.073	39.321	1	559560			78	5531	42	42	104	104		665;666			-0.03372285845875922
AAMPGFIAK	9	Oxidation (M)	_AAM(Oxidation (M))PGFIAK_		AAM(1)PGFIAK		AAM(61)PGFIAK	0	0	1		ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.2466735839844	2	461.246763	920.478974	0.17962	8.2851E-05	-0.62929	-0.00029026	-0.44967	-0.00020741	461.2465987476831	29.82	1.0581	29.82	29.441	30.499	0					88	37	5	0	0	0	0.027237	1	5359	5359		61.357	42.1	1	1552500			79	3026	43	43	105	105		376			0.015553439966879523
AAMPGFIAK	9	Oxidation (M)	_AAM(Oxidation (M))PGFIAK_		AAM(1)PGFIAK		AAM(61)PGFIAK	0	0	1		ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.24652099609375	2	461.246763	920.478974	0.13348	6.1567E-05	-0.38555	-0.00017783	-0.25207	-0.00011626	461.24651199229754	30.139	0.86481	30.139	29.945	30.81	0					51	30	2	0	0	0	0.027237	1	5493	5493		61.357	42.1	1	1416600			80	3026	43	43	106	106		376			0.015553439966879523
AAMPGFIAK	9	Oxidation (M)	_AAM(Oxidation (M))PGFIAK_		AAM(1)PGFIAK		AAM(55)PGFIAK	0	0	1		ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.24664306640625	2	461.246763	920.478974	0.11468	5.2896E-05	-0.43879	-0.00020239	-0.32411	-0.00014949	461.24662653057254	29.838	1.0657	29.85	29.389	30.454	0.012266					104	36	5	0	0	0	0.044952	1	5348	5348		54.774	36.627	1	1591800			81	3026	43	43	107	107		376			0.015553439966879523
AAMPGFIAK	9	Oxidation (M)	_AAM(Oxidation (M))PGFIAK_		AAM(1)PGFIAK		AAM(48)PGFIAK	0	0	1		ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.88812255859375	2	461.246763	920.478974	0.12903	5.9516E-05	-0.39887	-0.00018398	-0.26984	-0.00012446	461.2465326602704	30.127	1.2043	30.155	29.964	31.168	0.027946					66	42	2	0	0	0	0.11486	1	5458	5458		48.346	20.173	1	1454300			82	3026	43	43	108	108		376			0.015553439966879523
AAMPGFIAK	9	Oxidation (M)	_AAM(Oxidation (M))PGFIAK_		AAM(1)PGFIAK		AAM(61)PGFIAK	0	0	1		ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.24664306640625	2	461.246763	920.478974	-0.068921	-3.179E-05	0.054699	2.523E-05	-0.014222	-6.5599E-06	461.2467297909439	29.798	0.4358	29.811	29.507	29.943	0.013474					28	14	2	0	0	0	0.027237	1	5349	5349		61.357	42.1	1	1465400			83	3026	43	43	109	109		376			0.015553439966879523
AAMPGFIAK	9	Oxidation (M)	_AAM(Oxidation (M))PGFIAK_		AAM(1)PGFIAK		AAM(71)PGFIAK	0	0	1		ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.24652099609375	2	461.246763	920.478974	-0.11415	-5.2649E-05	-0.27172	-0.00012533	-0.38587	-0.00017798	461.2466439086833	30.074	1.2983	30.102	29.435	30.733	0.027159					107	44	4	0	0	0	0.015402	1	5497	5497		71.134	49.387	1	1496300			84	3026	43	43	110	110		376			0.015553439966879523
AANGVIHML	9	Oxidation (M)	_AANGVIHM(Oxidation (M))L_		AANGVIHM(1)L		AANGVIHM(85)L	0	0	1		ENSG00000010327|ENST00000321725|STAB1;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.73687744140625	2	471.247295	940.480036	-1.2403	-0.00058448	0.34541	0.00016277	-0.89486	-0.0004217	471.2474173228547	34.651	0.83826	34.651	34.362	35.2	0					54	29	2	0	0	0	0.0061338	1	6939	6939		85.357	47.206	1	462600			85	423	44	44	111	111		41			0.00741558365587025
AANGVIHML	9	Oxidation (M)	_AANGVIHM(Oxidation (M))L_		AANGVIHM(1)L		AANGVIHM(78)L	0	0	1		ENSG00000010327|ENST00000321725|STAB1;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7369384765625	2	471.247295	940.480036	-1.3154	-0.00061988	0.26717	0.0001259	-1.0482	-0.00049398	471.2473853562987	34.574	0.76796	34.65	34.414	35.182	0.075306					52	27	2	0	0	0	0.010938	1	6929	6929		77.984	43.797	1	478000			86	423	44	44	112	112		41			0.00741558365587025
AANGVIHML	9	Oxidation (M)	_AANGVIHM(Oxidation (M))L_		AANGVIHM(1)L		AANGVIHM(89)L	0	0	1		ENSG00000010327|ENST00000321725|STAB1;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.73699951171875	2	471.247295	940.480036	-0.47606	-0.00022434	-0.61757	-0.00029103	-1.0936	-0.00051537	471.24694399553056	34.54	0.7241	34.618	34.336	35.06	0.077377					49	25	2	0	0	0	0.0046213	2	6908	6803;6908		89.427	55.239	1	458860			87	423	44	44	113;114	114		41			0.00741558365587025
AAPAAYHGR	9	Unmodified	_AAPAAYHGR_					0	0	0		ENSG00000187033|ENST00000335556|SAMD7	ENSG00000187033|ENST00000335556|SAMD7	ENSG00000187033|ENST00000335556|SAMD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7486572265625	2	457.235576	912.456599	-0.053113	-2.4285E-05	-0.84259	-0.00038526	-0.8957	-0.00040955	457.23492231595054	17.993	0.72467	17.875	17.663	18.387	-0.11739					58	24	3	0	0	0	0.25291	1	1773	1773		9.3474	2.0582	1	170650			88	7661	45	45	115	115					-0.0031311935672420077
AAPARAPQI	9	Unmodified	_AAPARAPQI_					0	0	0		ENST00000599538.5_1_19:50528609-50528858:-|nuORF	ENST00000599538.5_1_19:50528609-50528858:-|nuORF	ENST00000599538.5_1_19:50528609-50528858:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.7616271972656	2	447.761426	893.5083	0.34334	0.00015373	0.39359	0.00017623	0.73693	0.00032997	447.7614069340705	30.126	0.64733	30.126	29.801	30.448	0					37	22	3	0	0	0	0.23007	1	5482	5482		19.257	2.3147	1	259820			89	12241	46	46	116	116					0.057286243371777346
AAPARAPQI	9	Unmodified	_AAPARAPQI_					0	0	0		ENST00000599538.5_1_19:50528609-50528858:-|nuORF	ENST00000599538.5_1_19:50528609-50528858:-|nuORF	ENST00000599538.5_1_19:50528609-50528858:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.7618408203125	2	447.761426	893.5083	-0.042886	-1.9203E-05	0.20973	9.391E-05	0.16685	7.4707E-05	447.76140953191305	30.129	0.83883	30.156	29.637	30.476	0.027157					40	28	2	0	0	0	0.18803	1	5473	5473		25.399	6.1423	1	225710			90	12241	46	46	117	117					0.057286243371777346
AAPKLVVGPF	10	Unmodified	_AAPKLVVGPF_					0	0	0			REV__nc|ENSG00000082074|O15117|FYB1	REV__nc|ENSG00000082074|O15117|FYB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.8057556152344	2	499.805303	997.596052	0.47757	0.00023869	0.39499	0.00019742	0.87255	0.00043611	499.80547880542247	86.945	0.89982	86.939	86.58	87.48	-0.0056229					67	37	2	0	0	0	0.29978	1	22913	22913		20.454	1.0146	1	908640	+		91	13915	47	47	118	118					0.09715825207945272
AAPKLVVGPF	10	Unmodified	_AAPKLVVGPF_					0	0	0			REV__nc|ENSG00000082074|O15117|FYB1	REV__nc|ENSG00000082074|O15117|FYB1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	499.805303	997.596052	0.47757	0.00023869	0.39499	0.00019742	0.87255	0.00043611	499.80547880542247	86.945	0.89982	86.939	86.58	87.48	-0.0056229	-0.021653	1.0971E-05	NaN	20.454	67	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	908640	+		92	13915	47	47							0.09715825207945272
AAPLVRRRKG	10	Unmodified	_AAPLVRRRKG_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3619384765625	2	562.362173	1122.70979	0.23988	0.0001349	-0.075401	-4.2403E-05	0.16448	9.2499E-05	562.3616841123278	98.184	1.0302	98.178	97.86	98.89	-0.0068207					198	116	3	0	0	0	0.38233	1	26334	26334		6.7232	2.3939	1	644470			93	5186	48	48	119	119					0.15334733093550312
AAPQRLPLL	9	Unmodified	_AAPQRLPLL_					0	0	0		ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1;PANK1|p.I539Tfs*17|1|0.19|ENSG00000152782|chr10:89588770-89588773|TCTA/-|frameshift_variant	ENSG00000152782|ENST00000307534|PANK1	ENSG00000152782|ENST00000307534|PANK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.8096618652344	2	489.808377	977.6022	0.45697	0.00022383	0.12198	5.9745E-05	0.57895	0.00028357	489.8083249231038	57.215	0.51274	57.215	57.012	57.525	0					40	18	3	0	0	0	0.24581	1	13797	13797		16.942	2.104	1	419530			94	5040	49	49	120	120					0.11250343439473909
AAPRPGRPRPS	11	Unmodified	_AAPRPGRPRPS_					0	0	0			REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.3338623046875	2	581.333613	1160.65267	0.1526	8.8712E-05	0.16128	9.3756E-05	0.31388	0.00018247	581.3338185686483	23.478	0.50252	23.391	23.046	23.548	-0.087608					27	17	2	0	0	0	0.42346	1	3445	3445		8.1555	1.9497	1	153530	+		95	22002	50	50	121	121					0.07877265817182888
AAPRPGRPRPS	11	Unmodified	_AAPRPGRPRPS_					0	0	0			REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.3341674804688	2	581.333613	1160.65267	0.31865	0.00018524	-0.22458	-0.00013056	0.094067	5.4684E-05	581.3335783650713	23.477	0.41737	23.438	23.202	23.62	-0.038927					26	14	2	0	0	0	0.44828	1	3454	3454		4.897	1.3005	1	144940	+		96	22002	50	50	122	122					0.07877265817182888
AAPRPGRPRPS	11	Unmodified	_AAPRPGRPRPS_					0	0	0			REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	581.333613	1160.65267	0.31865	0.00018524	-0.22458	-0.00013056	0.094067	5.4684E-05	581.3335783650713	23.477	0.41737	23.438	23.202	23.62	-0.038927	0.023579	-0.00021621	NaN	8.1555	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144940	+		97	22002	50	50							0.07877265817182888
AAPRRRHQL	9	Unmodified	_AAPRRRHQL_					0	0	0		ENST00000450142.6_2_12:80266707-80328889:-|nuORF	ENST00000450142.6_2_12:80266707-80328889:-|nuORF	ENST00000450142.6_2_12:80266707-80328889:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.304443359375	2	552.828498	1103.64244	0.031925	1.7649E-05	2.7991	0.0015474	2.831	0.0015651	552.8301643030055	15.051	0.2213	14.987	14.82	15.041	-0.064413					11	7	2	0	0	0	0.26251	1	884	884		0.6015	0.076735	1	55226			98	10635	51	51	123	123					0.09476702882602694
AAQDLPFVLK	10	Unmodified	_AAQDLPFVLK_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2;ENST00000468712.5_1_7:26766479-26894483:-|nuORF	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7839965820312	2	551.318774	1100.623	0.47957	0.00026439	-2.5748	-0.0014195	-2.0952	-0.0011551	551.3186527936027	58.561	0.67016	58.561	58.298	58.968	0					53	22	3	0	0	0	0.26647	1	14212	14212		34.222	25.476	1	1170600			99	323	52	52	124	124					0.07670889028463534
AAQDLPFVLK	10	Unmodified	_AAQDLPFVLK_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2;ENST00000468712.5_1_7:26766479-26894483:-|nuORF	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.3030395507812	2	551.318774	1100.623	0.47256	0.00026053	-2.0823	-0.001148	-1.6098	-0.00088749	551.318632566166	58.415	0.61802	58.507	58.257	58.875	0.091301					54	21	3	0	0	0	0.25625	1	14165	14165		37.771	21.622	1	1191400			100	323	52	52	125	125					0.07670889028463534
AAQDSTDLVAK	11	Unmodified	_AAQDSTDLVAK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;ENST00000546204.1_1_6:160200657-160201127:-|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7876586914062	2	559.788035	1117.56152	0.18668	0.0001045	-0.16437	-9.2014E-05	0.022306	1.2486E-05	559.788154993597	25.377	0.59113	25.377	25.091	25.683	0					26	19	2	0	0	0	0.011444	1	4046	4046		66.617	46.202	1	231590			101	2942	53	53	126	126					0.007439125385189982
AAQDSTDLVAK	11	Unmodified	_AAQDSTDLVAK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;ENST00000546204.1_1_6:160200657-160201127:-|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.7881469726562	2	559.788035	1117.56152	0.074974	4.197E-05	0.39301	0.00022	0.46799	0.00026197	559.7879657159707	25.445	0.40587	25.389	25.186	25.592	-0.055931					35	13	3	0	0	0	0.011476	1	4068	4068		66.55	49.437	1	264530			102	2942	53	53	127	127					0.007439125385189982
AAQDSTDLVAK	11	Unmodified	_AAQDSTDLVAK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;ENST00000546204.1_1_6:160200657-160201127:-|nuORF	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.7879028320312	2	559.788035	1117.56152	-0.091854	-5.1419E-05	0.85216	0.00047703	0.76031	0.00042561	559.7884945437512	25.48	0.63969	25.449	25.098	25.738	-0.031408					47	22	3	0	0	0	0.016618	1	4069	4069		62.894	45.781	1	246180			103	2942	53	53	128	128					0.007439125385189982
AAQESGTIPK	10	Unmodified	_AAQESGTIPK_					0	0	0		ENSG00000018510|ENST00000264167|AGPS;AGPS-LMNA|2|fusion;AGPS-LMNA|3|fusion;AGPS-LMNA|4|fusion;AGPS-LMNA|1|fusion	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.26654052734375	2	501.266739	1000.51892	0.16397	8.2192E-05	1.2651	0.00063413	1.429	0.00071632	501.26656679023165	18.877	1.225	18.877	18.1	19.325	0					83	42	3	0	0	0	0.18709	1	2024	2024		34.222	8.201	1	271100			104	495	54	54	129	129					0.018685622009684266
AAQESGTIPK	10	Unmodified	_AAQESGTIPK_					0	0	0		ENSG00000018510|ENST00000264167|AGPS;AGPS-LMNA|2|fusion;AGPS-LMNA|3|fusion;AGPS-LMNA|4|fusion;AGPS-LMNA|1|fusion	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2666931152344	2	501.266739	1000.51892	0.16638	8.34E-05	-0.20008	-0.00010029	-0.033697	-1.6891E-05	501.26661158233236	19.058	1.3817	18.941	17.957	19.339	-0.11739					85	48	3	0	0	0	0.15804	1	2070	2070		37.771	4.8736	1	277350			105	495	54	54	130	130					0.018685622009684266
AAQESGTIPK	10	Unmodified	_AAQESGTIPK_					0	0	0		ENSG00000018510|ENST00000264167|AGPS;AGPS-LMNA|2|fusion;AGPS-LMNA|3|fusion;AGPS-LMNA|4|fusion;AGPS-LMNA|1|fusion	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.266845703125	2	501.266739	1000.51892	0.053029	2.6581E-05	-0.096135	-4.8189E-05	-0.043106	-2.1608E-05	501.2666569064577	18.835	1.0535	18.777	18.313	19.366	-0.058174					72	36	3	0	0	0	0.18709	2	1991	1991;2039		34.222	17.109	1	243370			106	495	54	54	131;132	131					0.018685622009684266
AAQGYGYYRTV	11	Unmodified	_AAQGYGYYRTV_					0	0	0		nc|ENSG00000137700|O43826|SLC37A4;ENSG00000137700|ENST00000330775|SLC37A4;nc|ENSG00000137700|O43826-2|SLC37A4;ENST00000526626.6_1_11:118898577-118900094:-|nuORF;ENST00000532085.1_1_11:118899923-118900094:-|nuORF;ENST00000532888.6_1_11:118899072-118900094:-|nuORF;ENST00000529510.5_1_11:118897799-118900094:-|nuORF;ENST00000525787.1_1_11:118898858-118900094:-|nuORF;ENST00000525102.5_1_11:118898396-118900094:-|nuORF	nc|ENSG00000137700|O43826|SLC37A4	nc|ENSG00000137700|O43826|SLC37A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.8036499023438	2	624.80402	1247.59349	0.16929	0.00010578	-0.73784	-0.00046101	-0.56855	-0.00035523	624.8036570239492	18.666	0.6432	18.666	18.391	19.034	0					56	22	3	0	0	0	0.37585	1	2002	2002		14.405	2.9107	1	305340			107	4067	55	55	133	133					-0.020406749877110997
AAQGYGYYRTV	11	Unmodified	_AAQGYGYYRTV_					0	0	0		nc|ENSG00000137700|O43826|SLC37A4;ENSG00000137700|ENST00000330775|SLC37A4;nc|ENSG00000137700|O43826-2|SLC37A4;ENST00000526626.6_1_11:118898577-118900094:-|nuORF;ENST00000532085.1_1_11:118899923-118900094:-|nuORF;ENST00000532888.6_1_11:118899072-118900094:-|nuORF;ENST00000529510.5_1_11:118897799-118900094:-|nuORF;ENST00000525787.1_1_11:118898858-118900094:-|nuORF;ENST00000525102.5_1_11:118898396-118900094:-|nuORF	nc|ENSG00000137700|O43826|SLC37A4	nc|ENSG00000137700|O43826|SLC37A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.8037719726562	2	624.80402	1247.59349	-0.14089	-8.8026E-05	-0.44561	-0.00027842	-0.5865	-0.00036645	624.8038209854046	18.814	0.76151	18.696	18.414	19.175	-0.11739					63	26	4	0	0	0	0.37585	2	2067	2014;2067		14.405	2.5416	1	326430			108	4067	55	55	134;135	135					-0.020406749877110997
AAQGYGYYRTV	11	Unmodified	_AAQGYGYYRTV_					0	0	0		nc|ENSG00000137700|O43826|SLC37A4;ENSG00000137700|ENST00000330775|SLC37A4;nc|ENSG00000137700|O43826-2|SLC37A4;ENST00000526626.6_1_11:118898577-118900094:-|nuORF;ENST00000532085.1_1_11:118899923-118900094:-|nuORF;ENST00000532888.6_1_11:118899072-118900094:-|nuORF;ENST00000529510.5_1_11:118897799-118900094:-|nuORF;ENST00000525787.1_1_11:118898858-118900094:-|nuORF;ENST00000525102.5_1_11:118898396-118900094:-|nuORF	nc|ENSG00000137700|O43826|SLC37A4	nc|ENSG00000137700|O43826|SLC37A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.8037109375	2	624.80402	1247.59349	-0.14897	-9.3076E-05	-0.47757	-0.00029839	-0.62653	-0.00039146	624.8037983081764	18.741	0.73976	18.683	18.458	19.198	-0.058172					65	25	4	0	0	0	0.33189	1	2027	2027		19.362	3.2128	1	335000			109	4067	55	55	136	136					-0.020406749877110997
AAQKGRTQL	9	Unmodified	_AAQKGRTQL_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2;TNKS2|p.E1150Sfs*3|1|0.23|ENSG00000107854|chr10:91862946-91862946|G/-|frameshift_variant;ENSG00000173273|ENST00000310430|TNKS	ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	ENSG00000173273|ENST00000310430|TNKS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7828674316406	2	486.78289	971.551228	-0.075329	-3.6669E-05	0.50366	0.00024517	0.42833	0.0002085	486.7830082290848	13.215	0.42479	13.215	13.003	13.427	0					41	14	4	0	0	0	0.33719	1	405	405		3.2813	1.4371	1	380270			110	6712;2152	56	56	137	137					0.06431394394610379
AAQKGRTQL	9	Unmodified	_AAQKGRTQL_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2;TNKS2|p.E1150Sfs*3|1|0.23|ENSG00000107854|chr10:91862946-91862946|G/-|frameshift_variant;ENSG00000173273|ENST00000310430|TNKS	ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	ENSG00000173273|ENST00000310430|TNKS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7828063964844	2	486.78289	971.551228	-0.077351	-3.7653E-05	0.42859	0.00020863	0.35124	0.00017098	486.78301977894904	13.301	0.77787	13.201	12.611	13.389	-0.09929					56	26	4	0	0	0	0.12056	1	381	381		51.415	13.24	1	423940			111	6712;2152	56	56	138	138					0.06431394394610379
AAQKGRTQL	9	Unmodified	_AAQKGRTQL_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2;TNKS2|p.E1150Sfs*3|1|0.23|ENSG00000107854|chr10:91862946-91862946|G/-|frameshift_variant;ENSG00000173273|ENST00000310430|TNKS	ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	ENSG00000173273|ENST00000310430|TNKS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7830505371094	2	486.78289	971.551228	-0.098566	-4.798E-05	0.55841	0.00027183	0.45985	0.00022385	486.7830694515698	13.271	0.53801	13.204	12.905	13.443	-0.067496					57	18	4	0	0	0	0.053988	1	370	370		51.415	13.24	1	386510			112	6712;2152	56	56	139	139					0.06431394394610379
AAQLARCWLWG	11	Unmodified	_AAQLARCWLWG_					0	0	0			REV__ENST00000260803.8_1_3:137893593-137893695:-|nuORF	REV__ENST00000260803.8_1_3:137893593-137893695:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.8116455078125	2	637.826775	1273.639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.439	1	86.523	86.023	87.023	0.084251								0	0	0	0.37252	1	22742	22742		3.2813	0.28607	1		+		113	19584	57	57	140	140					0.0131227199372006
AAQSIRPTK	9	Unmodified	_AAQSIRPTK_					0	0	0			REV__ENSG00000188959|ENST00000400613|C9orf152	REV__ENSG00000188959|ENST00000400613|C9orf152	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	486.285266	970.555979	0.76305	0.00037106	-0.66138	-0.00032162	0.10168	4.9444E-05	486.284777743652	77.784	0.60694	77.753	77.262	77.869	-0.031334					31	21	2	0	0	0	0.25622	1	20056	20056		1.6526	1.6526	1	149870	+		114	18584	58	58	141	141					0.06952278537369239
AARAQLAPL	9	Unmodified	_AARAQLAPL_					0	0	0			REV__ENSG00000129566|ENST00000262715|TEP1	REV__ENSG00000129566|ENST00000262715|TEP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2079162597656	2	455.777077	909.5396	0.0033209	1.5136E-06	0.18621	8.487E-05	0.18953	8.6384E-05	455.77705967906314	16.36	0.83071	16.36	15.918	16.749	0					54	28	2	0	0	0	0.25879	1	1410	1410		4.756	0	1	132890	+		115	15421	59	59	142	142					0.08121197371269773
AARGHKKG	8	Unmodified	_AARGHKKG_					0	0	0			REV__ENST00000574857.1_1_17:2276102-2276510:+|nuORF	REV__ENST00000574857.1_1_17:2276102-2276510:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2861633300781	2	412.746111	823.477669	0.20635	8.5169E-05	-2.0031	-0.00082678	-1.7968	-0.00074161	412.74576514036903	92.78	0.070511	92.869	92.842	92.912	0.089195					6	5	2	0	0	0	0.34434	1	24679	24679		0.79363	0	1	19908	+		116	22435	60	60	143	143					0.05886890742806372
AARGLPLL	8	Unmodified	_AARGLPLL_					0	0	0			REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	REV__nc|ENSG00000197181|Q8TC59-2|PIWIL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.21795654296875	2	405.763438	809.512323	-0.25799	-0.00010468	0.5607	0.00022751	0.30271	0.00012283	405.7636184407288	42.753	0.3202	42.845	42.607	42.928	0.091362					20	11	2	0	0	0	0.34218	1	9341	9341		9.3474	0	1	115120	+		117	18718	61	61	144	144					0.09994713830894852
AARGPADPM	9	Unmodified	_AARGPADPM_					0	0	0			REV__ENST00000475084.5_1_1:38463429-38463474:-|nuORF	REV__ENST00000475084.5_1_1:38463429-38463474:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.56884765625	2	443.215995	884.417436	0.031127	1.3796E-05	0.83652	0.00037076	0.86765	0.00038456	443.21639778874163	15.666	1.0168	15.602	15.247	16.264	-0.064413					57	34	2	0	0	0	0.25879	1	1282	1282		4.756	1.8668	1	125830	+		118	21402	62	62	145	145					-0.029395877026104245
AARMRHIPL	9	Unmodified	_AARMRHIPL_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.8110961914062	2	532.810928	1063.6073	0.26948	0.00014358	0.38735	0.00020639	0.65683	0.00034997	532.8110211050448	73.803	1.3516	73.803	73.053	74.405	0					138	46	4	0	0	0	0.30623	1	19049	19049		7.9102	0.62092	1	4039400			119	3521	63	63	146	146					0.07804324030439602
AARQVAQAL	9	Unmodified	_AARQVAQAL_					0	0	0			REV__ENSG00000100714|ENST00000652337|MTHFD1	REV__ENSG00000100714|ENST00000652337|MTHFD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2743225097656	2	464.272158	926.529764	-0.1765	-8.1944E-05	-0.14097	-6.5451E-05	-0.31747	-0.00014739	464.27240401517986	13.738	0.78982	13.672	13.247	14.037	-0.066068					84	27	5	0	0	0	0.27532	1	494	494		12.532	0	1	3202000	+		120	14226	64	64	147	147					0.06356009365879345
AASARLYRR	9	Unmodified	_AASARLYRR_					0	0	0		ENST00000367498.7_1_1:185280415-185286453:-|nuORF	ENST00000367498.7_1_1:185280415-185286453:-|nuORF	ENST00000367498.7_1_1:185280415-185286453:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7431640625	2	532.309606	1062.60466	0.052502	2.7947E-05	0.35691	0.00018999	0.40942	0.00021794	532.3101832553706	12.925	0.11523	12.857	12.763	12.878	-0.067496					5	3	2	0	0	0	0.26204	1	260	260		1.4819	0.68827	1	7008.7			121	9739	65	65	148	148					0.07586191897121353
AASKERSGVSL	11	Unmodified	_AASKERSGVSL_					0	0	0		ENSG00000187837|ENST00000343677|H1-2;ENSG00000168298|ENST00000304218|H1-4;ENSG00000124575|ENST00000244534|H1-3	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.80419921875	2	552.80402	1103.59349	0.24938	0.00013786	-0.11346	-6.2719E-05	0.13592	7.5137E-05	552.8039428949754	17.973	0.92448	17.973	17.69	18.614	0					100	31	4	0	0	0	0.0086212	3	1813	1762;1813;1865		72.59	49.742	1	1184500			122	3169	66	66	149;150;151	150					0.04583325012345085
AASKERSGVSL	11	Unmodified	_AASKERSGVSL_					0	0	0		ENSG00000187837|ENST00000343677|H1-2;ENSG00000168298|ENST00000304218|H1-4;ENSG00000124575|ENST00000244534|H1-3	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.8041381835938	2	552.80402	1103.59349	0.1882	0.00010404	0.0013061	7.2202E-07	0.18951	0.00010476	552.8039720362557	18.138	0.863	18.021	17.784	18.647	-0.11739					97	29	5	0	0	0	2.3024E-05	4	1854	1807;1854;1900;1981		112.04	54.319	1	1294300			123	3169	66	66	152;153;154;155	153					0.04583325012345085
AASKERSGVSL	11	Unmodified	_AASKERSGVSL_					0	0	0		ENSG00000187837|ENST00000343677|H1-2;ENSG00000168298|ENST00000304218|H1-4;ENSG00000124575|ENST00000244534|H1-3	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.8041381835938	2	552.80402	1103.59349	0.080907	4.4725E-05	0.097736	5.4029E-05	0.17864	9.8755E-05	552.8040194956118	18.172	0.88789	18.114	17.819	18.707	-0.058172					97	31	4	0	0	0	1.583E-05	4	1846	1805;1846;1891;1950		118.81	69.259	1	1111400			124	3169	66	66	156;157;158;159	157					0.04583325012345085
AASPPLQRDGV	11	Unmodified	_AASPPLQRDGV_					0	0	0			REV__nc|ENSG00000006282|Q8TB22-4|SPATA20	REV__nc|ENSG00000006282|Q8TB22-4|SPATA20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7964477539062	2	555.798737	1109.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.75	1	115.73	115.23	116.23	-0.020988								0	0	0	0.36685	1	30007	30007		4.5289	1.5336	1		+		125	13356	67	67	160	160					0.03251342357907561
AASPPLQRDGV	11	Unmodified	_AASPPLQRDGV_					0	0	0			REV__nc|ENSG00000006282|Q8TB22-4|SPATA20	REV__nc|ENSG00000006282|Q8TB22-4|SPATA20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7959594726562	2	555.798737	1109.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.82	1	114.83	114.33	115.33	0.016708								0	0	0	0.38137	1	29852	29852		1.0715	0	1		+		126	13356	67	67	161	161					0.03251342357907561
AASSSLDLLNR	11	Unmodified	_AASSSLDLLNR_					0	0	0		ENST00000377474.3_1_13:77458949-77459180:-|nuORF	ENST00000377474.3_1_13:77458949-77459180:-|nuORF	ENST00000377474.3_1_13:77458949-77459180:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.9610595703125	2	573.809302	1145.60405	0.13348	7.6591E-05	0.98805	0.00056695	1.1215	0.00064354	573.8098907277573	15.124	0.44104	15.014	14.818	15.259	-0.10982					26	15	2	0	0	0	0.3327	1	882	882		2.7352	0.67545	1	94385			127	9937	68	68	162	162					0.037073076667638816
AATAKRGPL	9	Unmodified	_AATAKRGPL_					0	0	0			REV__ENST00000426333.6_1_17:42976750-42976942:-|nuORF	REV__ENST00000426333.6_1_17:42976750-42976942:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.5690002441406	2	442.769252	883.52395	0.17362	7.6874E-05	0.33552	0.00014856	0.50914	0.00022543	442.76950572221034	16.974	0.40221	16.974	16.749	17.151	0					20	13	2	0	0	0	0.24913	1	1424	1424		12.532	4.6214	1	40436	+		128	20902	69	69	163	163					0.07752910854230777
AATAKRGPL	9	Unmodified	_AATAKRGPL_					0	0	0			REV__ENST00000426333.6_1_17:42976750-42976942:-|nuORF	REV__ENST00000426333.6_1_17:42976750-42976942:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.5687561035156	2	442.769252	883.52395	-0.061829	-2.7376E-05	0.16587	7.3443E-05	0.10404	4.6067E-05	442.76919316340786	17.108	0.64003	16.991	16.746	17.386	-0.11739					26	22	2	0	0	0	0.25938	1	1470	1470		4.3292	1.7518	1	34818	+		129	20902	69	69	164	164					0.07752910854230777
AATLFTKF	8	Unmodified	_AATLFTKF_					0	0	0			REV__ENSG00000204193|ENST00000423740|TXNDC8	REV__ENSG00000204193|ENST00000423740|TXNDC8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.7551574707031	2	449.755278	897.496004	0.31642	0.00014231	-0.30098	-0.00013537	0.015446	6.9469E-06	449.7550466654332	53.595	0.8448	53.586	53.305	54.149	-0.0096054					67	31	3	0	0	0	0.17761	1	12701	12701		46.921	0.89992	1	1092500	+		130	18926	70	70	165	165					0.04315587874123139
AAVFEGTRLF	10	Unmodified	_AAVFEGTRLF_					0	0	0			REV__ENST00000329198.4_1_5:172659283-172659433:-|nuORF	REV__ENST00000329198.4_1_5:172659283-172659433:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8129272460938	2	555.800749	1109.58694	0.04681	2.6017E-05	-1.1157	-0.00062009	-1.0689	-0.00059407	555.7995828751236	59.646	0.44567	59.646	59.56	60.006	0					22	15	2	0	0	0	0.25219	1	14554	14554		26.268	7.0112	1	216080	+		131	20027	71	71	166	166					0.03653431851603273
AAVGLVLPAK	10	Unmodified	_AAVGLVLPAK_					0	0	0		nc|ENSG00000162496|O75911-2|DHRS3;ENSG00000162496|ENST00000616661|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.8047180175781	2	469.805303	937.596052	-0.16967	-7.9711E-05	-0.40806	-0.00019171	-0.57773	-0.00027142	469.80496025454994	46.438	0.48666	46.438	46.246	46.732	0					37	17	3	0	0	0	0.051528	1	10483	10483		58.679	39.422	1	534600			132	5576	72	72	167	167					0.12475825207923208
AAVGLVLPAK	10	Unmodified	_AAVGLVLPAK_					0	0	0		nc|ENSG00000162496|O75911-2|DHRS3;ENSG00000162496|ENST00000616661|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.8049011230469	2	469.805303	937.596052	0.20354	9.5623E-05	-0.66297	-0.00031146	-0.45943	-0.00021584	469.80492000006075	46.441	0.51223	46.493	46.252	46.764	0.052574					30	18	2	0	0	0	0.051528	1	10464	10464		58.679	35.943	1	539910			133	5576	72	72	168	168					0.12475825207923208
AAVGLVLPAK	10	Unmodified	_AAVGLVLPAK_					0	0	0		nc|ENSG00000162496|O75911-2|DHRS3;ENSG00000162496|ENST00000616661|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.8049011230469	2	469.805303	937.596052	0.013465	6.3259E-06	-0.30636	-0.00014393	-0.29289	-0.0001376	469.80505743459713	46.494	0.41081	46.548	46.298	46.709	0.054375					30	14	3	0	0	0	0.025955	1	10456	10456		65.235	42.499	1	686160			134	5576	72	72	169	169					0.12475825207923208
AAVLLHLL	8	Unmodified	_AAVLLHLL_					0	0	0		ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENSG00000123064|ENST00000306014|DDX54	ENSG00000123064|ENST00000306014|DDX54	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8934326171875	2	425.281463	848.548374	-0.16387	-6.969E-05	0.10602	4.5088E-05	-0.057849	-2.4602E-05	425.2814509103453	19.731	0.46514	19.731	19.521	19.986	0					25	16	2	0	0	0	0.34434	1	2267	2267		0.79363	0	1	45769			135	3083	73	73	170	170					0.11804171007759123
AAVRITLTL	9	Unmodified	_AAVRITLTL_					0	0	0		ENSG00000118900|ENST00000262376|UBN1;nc|ENSG00000118900|Q9NPG3-2|UBN1	ENSG00000118900|ENST00000262376|UBN1	ENSG00000118900|ENST00000262376|UBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.80560302734375	2	479.30821	956.601866	-0.17697	-8.4823E-05	-0.18637	-8.9328E-05	-0.36334	-0.00017415	479.30799045606415	12.451	0.3925	12.451	12.332	12.724	0					29	12	4	0	0	0	0.35512	1	105	105		0.6015	0	1	348700			136	2850	74	74	171	171					0.12182923719592509
AAVSLVPLEI	10	Unmodified	_AAVSLVPLEI_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.26300048828125	2	506.307875	1010.6012	0.37461	0.00018967	-1.3386	-0.00067775	-0.96401	-0.00048809	506.3070406015546	68.453	0.59357	68.433	68.223	68.816	-0.019157					38	20	2	0	0	0	0.30586	1	17243	17243		19.257	2.1441	1	380450	+		137	15247	75	75	172	172					0.0963208427989457
AAWDRPPLR	9	Unmodified	_AAWDRPPLR_					0	0	0		ENST00000356432.7_1_16:129505-133057:+|nuORF	ENST00000356432.7_1_16:129505-133057:+|nuORF	ENST00000356432.7_1_16:129505-133057:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.299072265625	2	541.298707	1080.58286	0.53303	0.00028853	1.0684	0.0005783	1.6014	0.00086683	541.2989171762539	37.769	0.81766	37.866	37.503	38.32	0.097527					81	29	4	0	0	0	0.13748	1	7848	7848		32.786	1.5173	1	935520			138	9623	76	76	173	173					0.04579387148532987
AAYDSLVVGK	10	Unmodified	_AAYDSLVVGK_					0	0	0		nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2557373046875	2	511.779482	1021.54441	0.3992	0.0002043	0.0083278	4.262E-06	0.40753	0.00020857	511.77942457977747	42.105	0.42427	42.19	42.009	42.434	0.085197					16	14	2	0	0	0	0.29144	1	9108	9108		26.021	17.865	1	191250			139	3356	77	77	174	174					0.034500367233818
AAYDSLVVGK	10	Unmodified	_AAYDSLVVGK_					0	0	0		nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	nc|ENSG00000128283|Q00587-2|CDC42EP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2561645507812	2	511.779482	1021.54441	0.40194	0.0002057	-0.23882	-0.00012222	0.16311	8.3479E-05	511.77958569154566	42.025	0.4276	42.116	41.957	42.385	0.091362					18	14	2	0	0	0	0.30504	1	9071	9071		21.59	11.407	1	145520			140	3356	77	77	175	175					0.034500367233818
AAYVKNNTL	9	Unmodified	_AAYVKNNTL_					0	0	0			REV__ENSG00000145632|ENST00000274289|PLK2	REV__ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2717590332031	2	497.271824	992.529095	0.49142	0.00024437	-0.44189	-0.00021974	0.049528	2.4629E-05	497.2714999187508	45.058	1.459	45.133	44.333	45.792	0.075047					129	53	4	0	0	0	0.19747	1	10054	10054		24.021	0.23079	1	1503400	+		141	16297	78	78	176	176					0.03253169926199462
ACAWGHTKP	9	Unmodified	_ACAWGHTKP_					0	0	0		ENSG00000122121|ENST00000371106|XPNPEP2	ENSG00000122121|ENST00000371106|XPNPEP2	ENSG00000122121|ENST00000371106|XPNPEP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001708984375	2	485.731812	969.449071	0.14116	6.8565E-05	4.4774	0.0021748	4.6186	0.0022434	485.73456998672805	41.241	0.077538	41.331	41.273	41.35	0.090248					4	2	2	0	0	0	0.25066	1	8855	8855		7.2892	0.93513	1	82480			142	3030	79	79	177	177					-0.03687594948655715
ACDWQKEAR	9	Unmodified	_ACDWQKEAR_					0	0	0		ENST00000312143.11_1_12:108687434-108732991:-|nuORF;ENST00000552995.5_1_12:108723923-108732991:-|nuORF	ENST00000312143.11_1_12:108687434-108732991:-|nuORF	ENST00000312143.11_1_12:108687434-108732991:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8304443359375	2	553.756015	1105.49748	0.31502	0.00017444	0.60888	0.00033717	0.92389	0.00051161	553.7572035766359	80.344	0.47595	80.344	80.064	80.54	0					42	17	4	0	0	0	0.25706	1	20850	20850		6.7232	2.3939	1	262720			143	9322	80	80	178	178					-0.05105146099413105
ACDWQKEAR	9	Unmodified	_ACDWQKEAR_					0	0	0		ENST00000312143.11_1_12:108687434-108732991:-|nuORF;ENST00000552995.5_1_12:108723923-108732991:-|nuORF	ENST00000312143.11_1_12:108687434-108732991:-|nuORF	ENST00000312143.11_1_12:108687434-108732991:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8305053710938	2	553.756015	1105.49748	0.27319	0.00015128	1.1205	0.00062049	1.3937	0.00077177	554.2575621683201	80.282	0.49194	80.347	80.083	80.575	0.065102					32	18	3	0	0	0	0.25706	1	20818	20818		6.7232	2.3939	1	219890			144	9322	80	80	179	179					-0.05105146099413105
ACDWQKEAR	9	Unmodified	_ACDWQKEAR_					0	0	0		ENST00000312143.11_1_12:108687434-108732991:-|nuORF;ENST00000552995.5_1_12:108723923-108732991:-|nuORF	ENST00000312143.11_1_12:108687434-108732991:-|nuORF	ENST00000312143.11_1_12:108687434-108732991:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8304443359375	2	553.756015	1105.49748	0.29978	0.000166	1.2783	0.00070789	1.5781	0.00087389	553.7572062869515	80.428	0.5358	80.401	80.142	80.678	-0.026825					38	18	3	0	0	0	0.25706	1	20903	20903		3.5965	0.8613	1	230080			145	9322	80	80	180	180					-0.05105146099413105
ACIALVSVRVF	11	Unmodified	_ACIALVSVRVF_					0	0	0		nc|ENSG00000080224|Q9UF33|EPHA6;ENSG00000080224|ENST00000389672|EPHA6;nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4	nc|ENSG00000080224|Q9UF33|EPHA6;nc|ENSG00000116106|P54764-2|EPHA4	nc|ENSG00000080224|Q9UF33|EPHA6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3421020507812	2	589.341726	1176.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.43	1	113.43	112.93	113.93	0								0	0	0	0.38126	1	29462	29462		1.1933	0.66858	1				146	1151;2702	81	81	181	181					0.0876321093903698
ACIALVSVRVF	11	Unmodified	_ACIALVSVRVF_					0	0	0		nc|ENSG00000080224|Q9UF33|EPHA6;ENSG00000080224|ENST00000389672|EPHA6;nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4	nc|ENSG00000080224|Q9UF33|EPHA6;nc|ENSG00000116106|P54764-2|EPHA4	nc|ENSG00000080224|Q9UF33|EPHA6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3436889648438	2	589.341726	1176.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.56	1	113.57	113.07	114.07	0.014824								0	0	0	0.38126	1	29542	29542		1.1933	0.66858	1				147	1151;2702	81	81	182	182					0.0876321093903698
ACKYIIFYT	9	Unmodified	_ACKYIIFYT_					0	0	0			REV__ENST00000358506.6_1_2:29022200-29022239:+|nuORF	REV__ENST00000358506.6_1_2:29022200-29022239:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2888793945312	2	561.288628	1120.5627	0.15774	8.8538E-05	-0.17019	-9.5528E-05	-0.012453	-6.9897E-06	561.2885162453149	17.388	0.73102	17.271	17.053	17.784	-0.11739					61	25	3	0	0	0	0.34536	1	1691	1691		2.0598	0	1	446180	+		148	20234	82	82	183	183					0.007244553737109527
ACLMIQYYI	9	Unmodified	_ACLMIQYYI_					0	0	0			REV__ENST00000389010.7_1_4:79800122-79800278:+|nuORF	REV__ENST00000389010.7_1_4:79800122-79800278:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2757568359375	2	559.274664	1116.53477	0.26113	0.00014604	1.2005	0.00067142	1.4616	0.00081746	559.2753369500626	16.976	0.31199	16.976	16.81	17.122	0					16	10	2	0	0	0	0.34374	1	1495	1495		2.3027	0.24298	1	47220	+		149	20576	83	83	184	184					-0.01883190878015739
ACMQGFVSKT	10	Oxidation (M)	_ACM(Oxidation (M))QGFVSKT_		ACM(1)QGFVSKT		ACM(48)QGFVSKT	0	0	1			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2493286132812	2	544.249177	1086.4838	0.6342	0.00034516	-0.1137	-6.188E-05	0.5205	0.00028328	544.249034990017	29.065	1.0096	29.065	28.791	29.801	0					62	36	2	0	0	0	0.10215	1	5159	5159		47.594	30.481	1	444150	+		150	15386	84	84	185	185		996			-0.05598139922858536
ACMQGFVSKT	10	Oxidation (M)	_ACM(Oxidation (M))QGFVSKT_		ACM(1)QGFVSKT		ACM(48)QGFVSKT	0	0	1			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2495727539062	2	544.249177	1086.4838	0.59415	0.00032336	-0.33876	-0.00018437	0.25539	0.00013899	544.2490561277498	29.102	1.0017	29.115	28.802	29.803	0.012266					65	34	3	0	0	0	0.10215	1	5155	5155		47.594	30.481	1	507750	+		151	15386	84	84	186	186		996			-0.05598139922858536
ACMQGFVSKT	10	Oxidation (M)	_ACM(Oxidation (M))QGFVSKT_		ACM(1)QGFVSKT		ACM(56)QGFVSKT	0	0	1			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2492065429688	2	544.249177	1086.4838	0.45829	0.00024942	-0.18948	-0.00010312	0.26881	0.0001463	544.2491549606418	29.059	0.7738	29.073	28.879	29.653	0.013475					63	27	3	0	0	0	0.066034	1	5151	5151		55.503	38.39	1	459350	+		152	15386	84	84	187	187		996			-0.05598139922858536
ACPSLPQPP	9	Unmodified	_ACPSLPQPP_					0	0	0		ENST00000244043.4_1_20:48124084-48124444:-|nuORF	ENST00000244043.4_1_20:48124084-48124444:-|nuORF	ENST00000244043.4_1_20:48124084-48124444:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2430419921875	2	455.228571	908.442588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.992	1	14.927	14.427	15.427	-0.064413								0	0	0	0.24715	1	891	891		7.2892	2.5332	1				153	8891	85	85	188	188					-0.015295329000423408
ACSSLDCTVRI	11	Unmodified	_ACSSLDCTVRI_					0	0	0		ENSG00000179698|ENST00000323662|WDR97;nc|ENSG00000179698|A6NE52-2|WDR97;ENST00000533108.1_1_8:145164641-145165891:+|nuORF	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2783203125	2	584.278466	1166.54238	0.0063283	3.6975E-06	0.24044	0.00014048	0.24677	0.00014418	584.2787635816608	28.279	0.54216	28.279	28.036	28.578	0					29	18	2	0	0	0	0.37585	1	4945	4945		14.405	6.7964	1	191810			154	7139	86	86	189	189					-0.034230833483889
ACVILPVILF	10	Unmodified	_ACVILPVILF_					0	0	0			REV__ENSG00000168615|ENST00000487273|ADAM9	REV__ENSG00000168615|ENST00000487273|ADAM9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.332763671875	2	544.332839	1086.65112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.882	1	85.882	85.382	86.382	0								0	0	0	0.3749	1	22579	22579		4.3292	0	1		+		155	17470	87	87	190	190					0.11126495684197835
ACYCEWGRLI	10	Unmodified	_ACYCEWGRLI_					0	0	0			REV__ENSG00000179314|ENST00000317744|WSCD1	REV__ENSG00000179314|ENST00000317744|WSCD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2783203125	3	405.187938	1212.54198	-0.065142	-2.6395E-05	2.4945	0.0010108	2.4294	0.00098437	405.1887752710875	86.832	0.25893	86.919	86.754	87.013	0.087097					14	10	2	0	0	0	0.32033	1	22868	22868		4.1895	2.1035	1	80704	+		156	18068	88	88	191	191					-0.055784582775913805
ADAIVKML	8	Oxidation (M)	_ADAIVKM(Oxidation (M))L_		ADAIVKM(1)L		ADAIVKM(48)L	0	0	1		nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;SRRT|p.D363Vfs*14|1|0.06|ENSG00000087087|chr7:100884968-100884969|-/TTTTGTCATCATTAGA|frameshift_variant;SRRT|p.V517Dfs*13|1|0.17|ENSG00000087087|chr7:100886338-100886348|TGCGCAACGAC/-|frameshift_variant	nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.7464904785156	2	438.746596	875.478639	0.12659	5.5541E-05	-0.39113	-0.00017161	-0.26455	-0.00011607	438.7463870801906	37.916	1.1461	38.007	37.638	38.784	0.090881					93	41	4	0	0	0	0.16948	1	7899	7899		48.346	12.219	1	1544500			157	1294	89	89	192	192		162			0.03591924276838654
ADAIVKML	8	Oxidation (M)	_ADAIVKM(Oxidation (M))L_		ADAIVKM(1)L		ADAIVKM(52)L	0	0	1		nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT;SRRT|p.D363Vfs*14|1|0.06|ENSG00000087087|chr7:100884968-100884969|-/TTTTGTCATCATTAGA|frameshift_variant;SRRT|p.V517Dfs*13|1|0.17|ENSG00000087087|chr7:100886338-100886348|TGCGCAACGAC/-|frameshift_variant	nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.746337890625	2	438.746596	875.478639	0.048237	2.1164E-05	-0.073771	-3.2367E-05	-0.025534	-1.1203E-05	438.74644694251947	37.883	1.1802	37.98	37.628	38.808	0.097527					91	42	3	0	0	0	0.14707	1	7774	7774		52.268	12.311	1	1435000			158	1294	89	89	193	193		162			0.03591924276838654
ADAPVALVV	9	Unmodified	_ADAPVALVV_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.75262451171875	2	427.752736	853.490919	0.17549	7.5064E-05	-0.04226	-1.8077E-05	0.13322	5.6987E-05	427.7525955440789	64.176	1.0572	64.176	63.826	64.884	0					99	38	4	0	0	0	0.0030686	3	15980	15882;15930;15980		101.72	63.571	1	2238300			159	369	90	90	194;195;196	196					0.0583128401152635
ADAPVALVV	9	Unmodified	_ADAPVALVV_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.7527770996094	2	427.752736	853.490919	0.077387	3.3102E-05	0.055781	2.3861E-05	0.13317	5.6963E-05	427.7526127284337	64.04	1.2455	64.133	63.765	65.01	0.09288					116	45	4	0	0	0	0.0030686	3	15861	15861;15906;15950		101.72	69.605	1	2305500			160	369	90	90	197;198;199	197					0.0583128401152635
ADAPVALVV	9	Unmodified	_ADAPVALVV_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.75262451171875	2	427.752736	853.490919	0.16973	7.2603E-05	-0.081172	-3.4722E-05	0.08856	3.7882E-05	427.75258347778987	64.135	1.3302	64.126	63.769	65.1	-0.0095291					123	48	4	0	0	0	0.0016131	4	15879	15879;15925;15972;16029		114.94	76.793	1	2451300			161	369	90	90	200;201;202;203	200					0.0583128401152635
ADASGLPHKL	10	Unmodified	_ADASGLPHKL_					0	0	0		TACC2|p.Q783Pfs*45|1|0.34|ENSG00000138162|chr10:122084840-122084841|-/C|frameshift_variant;TACC2|p.L823Yfs*105|1|0.29|ENSG00000138162|chr10:122084964-122084964|C/-|frameshift_variant;nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2	TACC2|p.Q783Pfs*45|1|0.34|ENSG00000138162|chr10:122084840-122084841|-/C|frameshift_variant	TACC2|p.Q783Pfs*45|1|0.34|ENSG00000138162|chr10:122084840-122084841|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.28521728515625	2	504.777274	1007.53999	0.079567	4.0163E-05	-0.065755	-3.3192E-05	0.013811	6.9717E-06	504.7773851949316	29.808	0.67401	29.822	29.421	30.095	0.013474					34	22	2	0	0	0	0.31401	1	5367	5367		14.405	1.3629	1	86322			162	4125	91	91	204	204					0.03652572300461543
ADATPSGSL	9	Unmodified	_ADATPSGSL_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.53662109375	2	409.698158	817.381762	-0.10966	-4.4927E-05	-0.31091	-0.00012738	-0.42057	-0.00017231	409.6981509404981	28.789	0.60257	28.789	28.524	29.127	0.0004673					32	21	2	0	0	0	0.11486	1	5034	5034		39.957	0	1	189370			163	6657	92	92	205	205					-0.03423346678619055
ADDTLIQMWK	10	Unmodified	_ADDTLIQMWK_					0	0	0		nc|ENSG00000117501|Q5TGP6|MROH9;ENSG00000117501|ENST00000367759|MROH9	nc|ENSG00000117501|Q5TGP6|MROH9	nc|ENSG00000117501|Q5TGP6|MROH9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.232421875	3	407.537513	1219.59071	-0.40994	-0.00016707	-0.55192	-0.00022493	-0.96185	-0.00039199	407.537319728245	13.185	0.24612	13.185	13.09	13.336	0					11	8	2	0	0	0	0.31847	1	336	336		3.5871	0	1	17133			164	2797	93	93	206	206					-0.010302664368509795
ADELRRLLRP	10	Unmodified	_ADELRRLLRP_					0	0	0			REV__nc|ENSG00000150281|Q16619-2|CTF1	REV__nc|ENSG00000150281|Q16619-2|CTF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3731079101562	2	619.870028	1237.7255	0.12236	7.5846E-05	-0.35072	-0.0002174	-0.22836	-0.00014155	619.8691099845951	93.934	1.0034	93.934	93.572	94.575	0					131	82	2	0	0	0	0.41085	1	25109	25109		1.4819	0	1	117470	+		165	16492	94	94	207	207					0.11614974819917734
ADELRRLLRP	10	Unmodified	_ADELRRLLRP_					0	0	0			REV__nc|ENSG00000150281|Q16619-2|CTF1	REV__nc|ENSG00000150281|Q16619-2|CTF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3724365234375	2	619.870028	1237.7255	0.059321	3.6771E-05	-0.043359	-2.6877E-05	0.015962	9.8941E-06	619.8691191290153	95.362	0.55869	95.362	94.896	95.455	0					76	50	2	0	0	0	0.41085	1	25406	25406		1.4819	0	1	102730	+		166	16492	94	94	208	208					0.11614974819917734
ADELRRLLRP	10	Unmodified	_ADELRRLLRP_					0	0	0			REV__nc|ENSG00000150281|Q16619-2|CTF1	REV__nc|ENSG00000150281|Q16619-2|CTF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.869140625	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.735	1	96.735	96.235	97.235	0								0	0	0	0.38166	1	25854	25854		1.4819	0	1		+		167	16492	94	94	209	209					0.11614974819917734
ADELRRLLRP	10	Unmodified	_ADELRRLLRP_					0	0	0			REV__nc|ENSG00000150281|Q16619-2|CTF1	REV__nc|ENSG00000150281|Q16619-2|CTF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.86767578125	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.402	1	98.402	97.902	98.902	0								0	0	0	0.38166	1	26327	26327		1.4819	0	1		+		168	16492	94	94	210	210					0.11614974819917734
ADELRRLLRP	10	Unmodified	_ADELRRLLRP_					0	0	0			REV__nc|ENSG00000150281|Q16619-2|CTF1	REV__nc|ENSG00000150281|Q16619-2|CTF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8699951171875	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.71	1	102.71	102.21	103.21	0								0	0	0	0.38166	1	27310	27310		1.4819	0	1		+		169	16492	94	94	211	211					0.11614974819917734
ADELRRLLRP	10	Unmodified	_ADELRRLLRP_					0	0	0			REV__nc|ENSG00000150281|Q16619-2|CTF1	REV__nc|ENSG00000150281|Q16619-2|CTF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8695068359375	2	619.870028	1237.7255	0.29543	0.00018313	-0.1832	-0.00011356	0.11223	6.9568E-05	619.8690396100932	94.564	1.5426	94.562	93.798	95.341	-0.0020142					222	130	2	0	0	0	0.41085	2	25224	25224;25374		1.4819	0	1	200390	+		170	16492	94	94	212;213	212					0.11614974819917734
ADELRRLLRP	10	Unmodified	_ADELRRLLRP_					0	0	0			REV__nc|ENSG00000150281|Q16619-2|CTF1	REV__nc|ENSG00000150281|Q16619-2|CTF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.86962890625	2	619.870028	1237.7255	0.20348	0.00012613	-0.46722	-0.00028961	-0.26374	-0.00016348	619.8692710448544	97.491	1.1283	97.485	96.973	98.101	-0.0055466					232	118	3	0	0	0	0.41085	1	26024	26024		1.4819	0	1	379940	+		171	16492	94	94	214	214					0.11614974819917734
ADELVMEHGN	10	Oxidation (M)	_ADELVM(Oxidation (M))EHGN_		ADELVM(1)EHGN		ADELVM(42)EHGN	0	0	1		ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-4|MEI1;nc|ENSG00000167077|Q5TIA1-6|MEI1	ENSG00000167077|ENST00000401548|MEI1	ENSG00000167077|ENST00000401548|MEI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.7425537109375	2	565.74277	1129.47099	0.51182	0.00028956	-1.0601	-0.00059976	-0.54832	-0.00031021	565.742346361732	36.475	0.85633	36.557	36.308	37.164	0.082359					76	30	3	0	0	0	0.12843	1	7406	7406		41.84	12.758	1	475100			172	6144	95	95	215	215		718			-0.08856879781410498
ADELVMEHGN	10	Oxidation (M)	_ADELVM(Oxidation (M))EHGN_					0	0	1		ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-4|MEI1;nc|ENSG00000167077|Q5TIA1-6|MEI1	ENSG00000167077|ENST00000401548|MEI1	ENSG00000167077|ENST00000401548|MEI1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	565.74277	1129.47099	0.68539	0.00038776	-1.1177	-0.00063231	-0.43228	-0.00024456	565.7422534221053	36.652	0.83566	36.745	36.306	37.142	0.093014	0.065024	-0.00012329	NaN	41.84	70	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	572120			173	6144	95	95				718			-0.08856879781410498
ADESETAVK	9	Unmodified	_ADESETAVK_					0	0	0		ENSG00000136448|ENST00000258960|NMT1;ENST00000588975.1_1_17:43138679-43163876:+|nuORF	ENSG00000136448|ENST00000258960|NMT1	ENSG00000136448|ENST00000258960|NMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.22760009765625	2	475.227279	948.440005	-0.2591	-0.00012313	0.90382	0.00042952	0.64472	0.00030639	475.22786452270446	34.286	0.79321	34.352	34.012	34.805	0.06636					62	28	4	0	0	0	0.18803	2	6700	6700;6760		25.399	1.3787	1	687600			174	3974	96	96	216;217	216					-0.036277098239793304
ADETKLNTV	9	Unmodified	_ADETKLNTV_					0	0	0		nc|ENSG00000148498|Q8TEW0-9|PARD3;nc|ENSG00000148498|Q8TEW0-8|PARD3;nc|ENSG00000148498|Q8TEW0-3|PARD3;nc|ENSG00000148498|Q8TEW0-7|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-4|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3	nc|ENSG00000148498|Q8TEW0-9|PARD3	nc|ENSG00000148498|Q8TEW0-9|PARD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7489013671875	2	495.758746	989.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.113	1	68.095	67.595	68.595	-0.017609								0	0	0	0.19013	1	17129	17129		25.399	1.3787	1				175	4817	97	97	218	218					0.007768559640453532
ADFGFSNEFTF	11	Unmodified	_ADFGFSNEFTF_					0	0	0		nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.852294921875	3	427.852266	1280.53497	-0.29738	-0.00012724	0.23099	9.883E-05	-0.066391	-2.8406E-05	427.85230769930047	42.225	1.091	42.225	41.996	43.087	0					90	39	3	0	0	0	0.43198	1	9158	9158		7.0371	0	1	1415900			176	984	98	98	219	219					-0.09407776352804831
ADFGFSNEFTF	11	Unmodified	_ADFGFSNEFTF_					0	0	0		nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	427.852266	1280.53497	-0.29738	-0.00012724	0.23099	9.883E-05	-0.066391	-2.8406E-05	427.85230769930047	42.225	1.091	42.225	41.996	43.087	0	0	0	NaN	7.0371	90	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1415900			177	984	98	98							-0.09407776352804831
ADFIDEYV	8	Unmodified	_ADFIDEYV_					0	0	0			REV__ENSG00000115128|ENST00000233468|SF3B6	REV__ENSG00000115128|ENST00000233468|SF3B6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.22119140625	2	486.221465	970.428378	0.00031397	1.5266E-07	-0.54735	-0.00026613	-0.54703	-0.00026598	486.22123229385176	30.227	0.86917	30.254	29.864	30.733	0.027157					40	29	2	0	0	0	0.33245	1	5527	5527		19.439	0	1	214070	+		178	14863	99	99	220	220					-0.05801906847329974
ADGEVSSEAL	10	Unmodified	_ADGEVSSEAL_					0	0	0			REV__nc|ENSG00000124313|Q5JU85-3|IQSEC2	REV__nc|ENSG00000124313|Q5JU85-3|IQSEC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.22467041015625	2	489.224736	976.43492	0.29266	0.00014318	-0.51812	-0.00025348	-0.22545	-0.0001103	489.22435819503414	69.044	0.45308	69.025	68.843	69.296	-0.01915					24	15	2	0	0	0	0.30586	1	17438	17438		19.257	3.4098	1	171810	+		179	22976	100	100	221	221					-0.05424013686615581
ADGEVSSEAL	10	Unmodified	_ADGEVSSEAL_					0	0	0			REV__nc|ENSG00000124313|Q5JU85-3|IQSEC2	REV__nc|ENSG00000124313|Q5JU85-3|IQSEC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	489.224736	976.43492	0.31825	0.0001557	0.066205	3.2389E-05	0.38446	0.00018809	489.22440792219567	68.902	0.9818	68.902	68.275	69.257	0	-0.061416	0.00024212	NaN	19.257	57	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192200	+		180	22976	100	100							-0.05424013686615581
ADGQEFLNHTL	11	Unmodified	_ADGQEFLNHTL_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.2320251464844	3	415.535048	1243.58332	0.074246	3.0852E-05	0.25502	0.00010597	0.32927	0.00013682	415.535143725606	16.021	0.62094	15.958	15.73	16.351	-0.062534					33	21	2	0	0	0	0.33202	1	1233	1233		2.8433	0	1	59771	+		181	18751	101	101	222	222					-0.028732827129033467
ADGRPSIV	8	Unmodified	_ADGRPSIV_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5534362792969	2	407.72451	813.434466	-0.0046137	-1.8811E-06	0.14491	5.9085E-05	0.1403	5.7204E-05	407.7244375820133	31.517	0.60903	31.558	31.255	31.864	0.040989					47	21	3	0	0	0	0.31088	1	5846	5846		21.747	0	1	1859500			182	3536	102	102	223	223					0.02028656174866228
ADGTMAFMFES	11	Unmodified	_ADGTMAFMFES_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.7443237304688	2	603.743924	1205.4733	0.89923	0.00054291	-0.31239	-0.0001886	0.58685	0.00035431	603.7438420776807	50.806	0.75294	50.806	50.544	51.297	0					74	27	4	0	0	0	0.30767	2	11795	11795;11844		21.537	5.3879	1	3461000			183	2540	103	103	224;225	224					-0.12122167367942893
ADGTMAFMFES	11	Unmodified	_ADGTMAFMFES_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.7443237304688	2	603.743924	1205.4733	0.85703	0.00051742	-0.35142	-0.00021217	0.50561	0.00030526	603.7438485806069	50.771	0.82397	50.818	50.551	51.375	0.046577					77	30	4	0	0	0	0.30767	2	11796	11796;11849		21.537	6.2885	1	3245800			184	2540	103	103	226;227	226					-0.12122167367942893
ADGTMAFMFES	11	Unmodified	_ADGTMAFMFES_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.7446899414062	2	603.743924	1205.4733	0.70172	0.00042366	-0.16294	-9.8374E-05	0.53878	0.00032528	603.7439931634726	50.897	0.80877	50.906	50.593	51.402	0.0095634					91	30	5	0	0	0	0.30767	1	11869	11869		21.537	3.3906	1	3054400			185	2540	103	103	228	228					-0.12122167367942893
ADGYSALLTV	10	Unmodified	_ADGYSALLTV_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.8055114746094	2	505.263665	1008.51278	0.45973	0.00023228	0.18802	9.4999E-05	0.64774	0.00032728	505.26371397991886	64.274	0.9443	64.367	64.066	65.01	0.09288					59	34	3	0	0	0	0.27337	1	16097	16097		22.736	3.4793	1	1901900	+		186	13402	104	104	229	229					0.008860439694444722
ADHLYLVL	8	Unmodified	_ADHLYLVL_					0	0	0		ENST00000309594.4_1_13:21751380-21751524:+|nuORF	ENST00000309594.4_1_13:21751380-21751524:+|nuORF	ENST00000309594.4_1_13:21751380-21751524:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.27508544921875	2	472.26601	942.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.724	1	79.724	79.224	80.224	0								0	0	0	0.36169	1	20687	20687		9.3474	2.9933	1				187	9304	105	105	230	230					0.04390972902854173
ADIHPIQVQ	9	Unmodified	_ADIHPIQVQ_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.7735595703125	2	510.777274	1019.53999	0.30007	0.00015327	-2.3327	-0.0011915	-2.0327	-0.0010382	511.27849076205445	43.387	1.2529	43.387	42.786	44.039	0					128	45	4	0	0	0	0.068501	1	9487	9487		46.021	9.5148	1	2305700			188	621	106	106	231	231					0.031005723004795982
ADILDVNQI	9	Unmodified	_ADILDVNQI_					0	0	0		ENST00000472285.1_1_1:28136783-28144445:+|nuORF;ENSG00000117758|ENST00000373943|STX12	ENST00000472285.1_1_1:28136783-28144445:+|nuORF	ENST00000472285.1_1_1:28136783-28144445:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3033142089844	2	500.769114	999.523675	0.44026	0.00022047	1.242	0.00062194	1.6822	0.00084241	500.77007742615666	72.217	0.56425	72.217	72.048	72.613	0					33	20	2	0	0	0	0.23784	1	18428	18428		19.257	4.6753	1	143090			189	2808	107	107	232	232					0.023894463437159175
ADILDVNQI	9	Unmodified	_ADILDVNQI_					0	0	0		ENST00000472285.1_1_1:28136783-28144445:+|nuORF;ENSG00000117758|ENST00000373943|STX12	ENST00000472285.1_1_1:28136783-28144445:+|nuORF	ENST00000472285.1_1_1:28136783-28144445:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.3034973144531	2	500.769114	999.523675	0.4999	0.00025033	1.3849	0.00069354	1.8848	0.00094387	500.7700569252771	72.158	1.0331	72.214	71.868	72.901	0.056572					50	37	2	0	0	0	0.20167	1	18381	18381		22.736	8.1546	1	175730			190	2808	107	107	233	233					0.023894463437159175
ADILNEPIG	9	Unmodified	_ADILNEPIG_					0	0	0			REV__ENSG00000083720|ENST00000196371|OXCT1	REV__ENSG00000083720|ENST00000196371|OXCT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2507019042969	2	471.250557	940.486562	-0.10873	-5.1237E-05	0.23071	0.00010872	0.12199	5.7486E-05	471.2504376771743	69.454	0.55826	69.454	69.201	69.76	0					46	19	3	0	0	0	0.040595	1	17566	17566		74.929	12.356	1	379530	+		191	13937	108	108	234	234					0.013937747979639425
ADILNEPIG	9	Unmodified	_ADILNEPIG_					0	0	0			REV__ENSG00000083720|ENST00000196371|OXCT1	REV__ENSG00000083720|ENST00000196371|OXCT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2502746582031	2	471.250557	940.486562	0.11355	5.3512E-05	-0.22168	-0.00010447	-0.10813	-5.0956E-05	471.25005019698557	69.522	0.59444	69.5	69.209	69.804	-0.022087					52	21	3	0	0	0	0.063853	1	17581	17581		47.749	2.0491	1	273280	+		192	13937	108	108	235	235					0.013937747979639425
ADILNEPIG	9	Unmodified	_ADILNEPIG_					0	0	0			REV__ENSG00000083720|ENST00000196371|OXCT1	REV__ENSG00000083720|ENST00000196371|OXCT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	471.250557	940.486562	0.06078	2.8643E-05	-0.33174	-0.00015633	-0.27096	-0.00012769	471.2501899719654	69.408	0.56363	69.474	69.205	69.769	0.066048	-0.0019946	-0.00022703	NaN	74.929	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	456580	+		193	13937	108	108							0.013937747979639425
ADILNEPIG	9	Unmodified	_ADILNEPIG_					0	0	0			REV__ENSG00000083720|ENST00000196371|OXCT1	REV__ENSG00000083720|ENST00000196371|OXCT1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	471.250557	940.486562	0.11355	5.3512E-05	-0.22168	-0.00010447	-0.10813	-5.0956E-05	471.25005019698557	69.522	0.59444	69.5	69.209	69.804	-0.022087	0.024263	-0.0001233	NaN	74.929	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273280	+		194	13937	108	108							0.013937747979639425
ADITLAIKF	9	Unmodified	_ADITLAIKF_					0	0	0		ENST00000475818.5_1_3:13522761-13543460:+|nuORF;ENSG00000163517|ENST00000295757|HDAC11;nc|ENSG00000163517|Q96DB2-2|HDAC11	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2831115722656	2	496.294768	990.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.709	1	59.709	59.209	60.209	0								0	0	0	0.21726	1	14555	14555		16.942	0.79319	1				195	5692	109	109	236	236					0.0793181510841805
ADLLGKRKP	9	Unmodified	_ADLLGKRKP_					0	0	0		ENST00000568774.5_1_16:1797122-1798792:+|nuORF	ENST00000568774.5_1_16:1797122-1798792:+|nuORF	ENST00000568774.5_1_16:1797122-1798792:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.29315185546875	2	499.311284	996.608014	0.29182	0.00014571	-0.30128	-0.00015043	-0.0094561	-4.7215E-06	499.3110407500697	17.839	0.41746	17.839	17.66	18.077	0					25	13	2	0	0	0	0.25988	1	1716	1716		3.9444	0.3479	1	70737			196	12005	110	110	237	237					0.10957441951131841
ADLLQTKL	8	Unmodified	_ADLLQTKL_					0	0	0		nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2	nc|ENSG00000136824|O95347-2|SMC2	nc|ENSG00000136824|O95347-2|SMC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.5543518066406	2	451.271293	900.528032	0.23426	0.00010571	1.0786	0.00048674	1.3129	0.00059245	451.27172503769543	48.977	0.71236	49.022	48.629	49.342	0.044891					38	25	2	0	0	0	0.29969	1	11186	11186		27.629	8.3718	1	643040			197	4001	111	111	238	238					0.07378955557271638
ADLQQESL	8	Unmodified	_ADLQQESL_					0	0	0			REV__nc|ENSG00000143376|Q96L92-2|SNX27	REV__nc|ENSG00000143376|Q96L92-2|SNX27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.74041748046875	2	452.224539	902.434526	0.20558	9.297E-05	0.17173	7.7661E-05	0.37732	0.00017063	452.22448323075133	32.819	0.42538	32.819	32.72	33.145	0					20	14	2	0	0	0	0.3474	1	6283	6283		25.399	2.2509	1	119870	+		198	16171	112	112	239	239					-0.020593886158053465
ADLSYVFAGL	10	Unmodified	_ADLSYVFAGL_					0	0	0			REV__ENST00000398869.2_1_22:50151619-50152259:-|nuORF	REV__ENST00000398869.2_1_22:50151619-50152259:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2745971679688	2	528.274032	1054.53351	0.37852	0.00019996	1.39	0.00073431	1.7685	0.00093427	528.2746116061342	80.117	0.52484	80.179	79.918	80.443	0.062729					37	19	2	0	0	0	0.15638	1	20841	20841		37.974	5.6685	1	502230	+		199	20685	113	113	240	240					0.008426343491009902
ADNFKQVI	8	Unmodified	_ADNFKQVI_					0	0	0		ENSG00000123643|ENST00000243389|SLC36A1;nc|ENSG00000123643|Q7Z2H8-3|SLC36A1;nc|ENSG00000123643|Q7Z2H8-4|SLC36A1	ENSG00000123643|ENST00000243389|SLC36A1	ENSG00000123643|ENST00000243389|SLC36A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7530822753906	2	467.753267	933.491981	0.22623	0.00010582	-0.3775	-0.00017658	-0.15128	-7.0761E-05	467.7530572670526	59.742	0.53778	59.73	59.459	59.997	-0.011486					32	18	3	0	0	0	0.32038	1	14585	14585		28.487	1.6032	1	472850			200	3120	114	114	241	241					0.022574983804247495
ADNIFPIL	8	Unmodified	_ADNIFPIL_					0	0	0		ENST00000299697.11_1_16:66545117-66545318:-|nuORF	ENST00000299697.11_1_16:66545117-66545318:-|nuORF	ENST00000299697.11_1_16:66545117-66545318:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.75933837890625	2	451.752736	901.490919	0.19818	8.9527E-05	-2.0802	-0.00093974	-1.882	-0.00085022	451.7516608457959	62.691	0.26387	62.683	62.514	62.778	-0.0085526					14	9	2	0	0	0	0.16948	1	15463	15463		48.346	8.3885	1	237070			201	9216	115	115	242	242					0.03623284011530359
ADNTLERREK	10	Unmodified	_ADNTLERREK_					0	0	0		nc|ENSG00000151276|Q96QZ7-7|MAGI1;nc|ENSG00000151276|Q96QZ7-6|MAGI1;ENSG00000151276|ENST00000402939|MAGI1;nc|ENSG00000151276|Q96QZ7|MAGI1	nc|ENSG00000151276|Q96QZ7-7|MAGI1	nc|ENSG00000151276|Q96QZ7-7|MAGI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.9115295410156	3	411.217831	1230.63166	-0.47711	-0.0001962	0.45956	0.00018898	-0.01755	-7.2169E-06	411.2178800875887	34.366	0.61163	34.433	34.092	34.704	0.06636					36	21	2	0	0	0	0.31497	1	6809	6809		14.218	4.0676	1	94983			202	4950	116	116	243	243					0.025572109269887733
ADPLDEEEEET	11	Unmodified	_ADPLDEEEEET_					0	0	0			REV__nc|ENSG00000148908|O43665-2|RGS10	REV__nc|ENSG00000148908|O43665-2|RGS10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2278747558594	3	426.173622	1275.49904	0.033262	1.4175E-05	-4.3072	-0.0018356	-4.2739	-0.0018214	426.50662933892266	72.493	0.45831	72.493	72.267	72.726	0					41	16	4	0	0	0	0.33122	1	18415	18415		7.0371	5.2948	1	152270	+		203	16444	117	117	244	244					-0.12769323110956066
ADPYLIEL	8	Unmodified	_ADPYLIEL_					0	0	0			REV__nc|ENSG00000163870|Q86W33-2|TPRA1	REV__nc|ENSG00000163870|Q86W33-2|TPRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2499084472656	2	467.250026	932.485499	0.26263	0.00012272	0.042474	1.9846E-05	0.30511	0.00014256	467.24988284559697	82.158	0.40738	82.134	81.813	82.22	-0.02404					26	15	2	0	0	0	0.32038	1	21394	21394		28.487	0	1	221120	+		204	17097	118	118	245	245					0.01655560429048819
ADPYLIEL	8	Unmodified	_ADPYLIEL_					0	0	0			REV__nc|ENSG00000163870|Q86W33-2|TPRA1	REV__nc|ENSG00000163870|Q86W33-2|TPRA1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	467.250026	932.485499	0.26263	0.00012272	0.042474	1.9846E-05	0.30511	0.00014256	467.24988284559697	82.158	0.40738	82.134	81.813	82.22	-0.02404	0.061752	-0.00020156	NaN	28.487	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221120	+		205	17097	118	118							0.01655560429048819
ADQIVLQWERV	11	Unmodified	_ADQIVLQWERV_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.25604248046875	3	452.91386	1355.71975	0.068688	3.111E-05	-0.4014	-0.0001818	-0.33272	-0.00015069	452.9135344288707	23.722	0.42333	23.649	23.368	23.791	-0.072559					27	14	3	0	0	0	0.45422	1	3483	3483		4.1166	0.52395	1	75691			206	2713	119	119	246	246					0.05611831517603605
ADQNWIKK	8	Unmodified	_ADQNWIKK_					0	0	0		nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4;nc|ENSG00000168679|O15374-3|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2925720214844	2	501.771991	1001.52943	0.10671	5.3546E-05	2.4829	0.0012459	2.5896	0.0012994	501.77367158002556	15.651	0.61337	15.587	15.36	15.973	-0.064414					40	20	3	0	0	0	0.4419	1	1130	1130		8.5933	0.68312	1	123220			207	6293	120	120	247	247					0.028725896460514377
ADRRSPVI	8	Unmodified	_ADRRSPVI_					0	0	0		nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8	nc|ENSG00000130821|P48029-4|SLC6A8	nc|ENSG00000130821|P48029-4|SLC6A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.264404296875	2	457.264333	912.514114	-0.011571	-5.2908E-06	-0.16765	-7.666E-05	-0.17922	-8.1951E-05	457.26419584546926	69.559	1.8701	69.559	68.977	70.847	0					133	67	3	0	0	0	0.45169	1	17495	17495		5.2307	0.47466	1	536180			208	3522	121	121	248	248					0.054357228488470355
ADRSLTILD	9	Unmodified	_ADRSLTILD_					0	0	0		nc|ENSG00000261011|Q8TF27|AGAP11	nc|ENSG00000261011|Q8TF27|AGAP11	nc|ENSG00000261011|Q8TF27|AGAP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2746887207031	2	502.274564	1002.53457	0.20396	0.00010244	-0.019837	-9.9634E-06	0.18412	9.248E-05	502.2745571410304	40.754	1.0007	40.854	40.479	41.48	0.099407					120	36	5	0	0	0	0.088443	1	8860	8860		39.95	1.7741	1	10595000			209	12985	122	122	249	249					0.033408487179940494
ADSDFPIF	8	Unmodified	_ADSDFPIF_					0	0	0		ENST00000225388.8_1_17:27586647-27586797:-|nuORF	ENST00000225388.8_1_17:27586647-27586797:-|nuORF	ENST00000225388.8_1_17:27586647-27586797:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2115173339844	2	456.210901	910.407249	0.12532	5.7174E-05	1.4065	0.00064164	1.5318	0.00069881	456.21144594673166	49.342	0.53455	49.387	49.16	49.695	0.044891					28	19	2	0	0	0	0.421	1	11373	11373		15.768	5.5848	1	284900			210	8842	123	123	250	250					-0.05153872156176931
ADSDFPIF	8	Unmodified	_ADSDFPIF_					0	0	0		ENST00000225388.8_1_17:27586647-27586797:-|nuORF	ENST00000225388.8_1_17:27586647-27586797:-|nuORF	ENST00000225388.8_1_17:27586647-27586797:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	456.210901	910.407249	0.26762	0.00012209	1.1489	0.00052413	1.4165	0.00064622	456.21133228263426	49.354	0.49423	49.354	49.105	49.6	0	-0.014405	-0.00019395	NaN	15.768	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296390			211	8842	123	123							-0.05153872156176931
ADSDFPIF	8	Unmodified	_ADSDFPIF_					0	0	0		ENST00000225388.8_1_17:27586647-27586797:-|nuORF	ENST00000225388.8_1_17:27586647-27586797:-|nuORF	ENST00000225388.8_1_17:27586647-27586797:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	456.210901	910.407249	0.024713	1.1274E-05	1.5077	0.00068781	1.5324	0.00069909	456.21153374756324	49.333	0.48107	49.365	49.121	49.602	0.032047	-0.0040712	0.00013341	NaN	15.768	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383180			212	8842	123	123							-0.05153872156176931
ADSHEEGSL	9	Unmodified	_ADSHEEGSL_					0	0	0		nc|ENSG00000085185|Q5H9F3-1|BCORL1;ENSG00000085185|ENST00000540052|BCORL1;nc|ENSG00000085185|Q5H9F3-4|BCORL1	nc|ENSG00000085185|Q5H9F3-1|BCORL1	nc|ENSG00000085185|Q5H9F3-1|BCORL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.70196533203125	2	472.701429	943.388304	0.5446	0.00025744	0.22759	0.00010758	0.7722	0.00036502	472.70170201216865	50.638	1.1047	50.638	50.326	51.43	0					99	40	4	0	0	0	0.055495	1	11769	11769		50.855	0	1	5540100			213	1253	124	124	251	251					-0.08565453517871902
ADTDGLNKQS	10	Unmodified	_ADTDGLNKQS_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7750854492188	2	524.74891	1047.48327	0.39051	0.00020492	0.48899	0.0002566	0.8795	0.00046152	524.7491071804678	16.445	0.50449	16.445	16.184	16.689	0					30	17	2	0	0	0	0.31143	1	1392	1392		17.113	3.2068	1	51777	+		214	17128	125	125	252	252					-0.03857520046722129
ADTTSELID	9	Unmodified	_ADTTSELID_					0	0	0			REV__ENSG00000114446|ENST00000264538|IFT57	REV__ENSG00000114446|ENST00000264538|IFT57	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7261962890625	2	482.727112	963.439671	0.22373	0.000108	-1.6198	-0.0007819	-1.396	-0.0006739	482.72599591258216	75.271	0.57477	75.271	75.043	75.618	0					31	20	2	0	0	0	0.21303	1	19313	19313		21.747	2.3076	1	443170	+		215	14834	126	126	253	253					-0.043511295438406705
ADVGRDRVQFG	11	Unmodified	_ADVGRDRVQFG_					0	0	0		nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.3125	2	610.312543	1218.61053	0.20243	0.00012354	-0.72579	-0.00044296	-0.52337	-0.00031942	610.3124086562008	31.05	1.2254	31.078	30.218	31.443	0.027946					122	43	4	0	0	0	0.3429	1	5746	5746		18.373	1.2602	1	740320			216	6660	127	127	254	254					0.009972456181458256
ADVLRVKSL	9	Unmodified	_ADVLRVKSL_					0	0	0			REV__ENST00000478160.1_1_3:160945095-160953023:+|nuORF	REV__ENST00000478160.1_1_3:160945095-160953023:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.80072021484375	2	500.811116	999.60768	0.25742	0.00012892	-0.4046	-0.00020263	-0.14718	-7.3708E-05	500.81095901623655	26.607	0.46294	26.607	26.35	26.813	0					35	15	3	0	0	0	0.23007	1	4387	4387		19.257	2.1441	1	209810	+		217	17506	128	128	255	255					0.10786022231286552
ADVVPINIT	9	Unmodified	_ADVVPINIT_					0	0	0		nc|ENSG00000135540|Q5SYE7|NHSL1;ENSG00000135540|ENST00000343505|NHSL1;ENST00000426841.6_1_6:138768126-138820433:-|nuORF	nc|ENSG00000135540|Q5SYE7|NHSL1	nc|ENSG00000135540|Q5SYE7|NHSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2686462402344	2	471.26875	940.522947	0.098318	4.6334E-05	0.27164	0.00012802	0.36996	0.00017435	471.26876715152406	71	0.52579	71	70.683	71.209	0					34	18	2	0	0	0	0.041175	1	18031	18031		56.177	10.477	1	621430			218	3882	129	129	256	256					0.05030651694653443
ADVVPINIT	9	Unmodified	_ADVVPINIT_					0	0	0		nc|ENSG00000135540|Q5SYE7|NHSL1;ENSG00000135540|ENST00000343505|NHSL1;ENST00000426841.6_1_6:138768126-138820433:-|nuORF	nc|ENSG00000135540|Q5SYE7|NHSL1	nc|ENSG00000135540|Q5SYE7|NHSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2687683105469	2	471.26875	940.522947	0.31613	0.00014898	0.20273	9.5539E-05	0.51886	0.00024452	471.2686381489086	71.008	0.62444	70.984	70.666	71.29	-0.024864					42	22	3	0	0	0	0.041175	1	18011	18011		56.177	4.5472	1	635880			219	3882	129	129	257	257					0.05030651694653443
ADVYEWWHK	9	Unmodified	_ADVYEWWHK_					0	0	0			REV__ENSG00000129315|ENST00000261900|CCNT1	REV__ENSG00000129315|ENST00000261900|CCNT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2970886230469	3	411.861096	1232.56146	-0.20422	-8.4111E-05	3.9584	0.0016303	3.7542	0.0015462	412.19688106801095	31.184	0.30202	31.184	31.007	31.309	0					13	10	2	0	0	0	0.26145	1	5796	5796		0.23584	0	1	64440	+		220	15410	130	130	258	258					-0.045520426708208106
ADWQRCPD	8	Unmodified	_ADWQRCPD_					0	0	0		ENST00000574829.5_1_17:4643771-4647168:+|nuORF;nc|ENSG00000141497|Q9H091-2|ZMYND15;ENSG00000141497|ENST00000433935|ZMYND15;nc|ENSG00000141497|Q9H091-3|ZMYND15	ENST00000574829.5_1_17:4643771-4647168:+|nuORF	ENST00000574829.5_1_17:4643771-4647168:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3038635253906	2	495.708534	989.402514	0.45989	0.00022797	3.3883	0.0016796	3.8482	0.0019076	495.70947711210835	75.166	0.35168	75.219	75.102	75.454	0.052368					21	12	2	0	0	0	0.34218	1	19346	19346		9.3474	0	1	118350			221	4385	131	131	259	259					-0.0926107957060367
ADWWRWRRSL	10	Unmodified	_ADWWRWRRSL_					0	0	0		ENST00000609181.5_1_1:220219711-220219759:-|nuORF	ENST00000609181.5_1_1:220219711-220219759:-|nuORF	ENST00000609181.5_1_1:220219711-220219759:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2635192871094	3	477.917938	1430.73199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.076	1	11.98	11.48	12.48	-0.096607								0	0	0	0.38206	1	21	21		0.15932	0.01943	1				222	12322	132	132	260	260					0.03384912771298332
ADYDYSTTI	9	Unmodified	_ADYDYSTTI_					0	0	0			REV__nc|ENSG00000163521|Q6UWU2-2|GLB1L	REV__nc|ENSG00000163521|Q6UWU2-2|GLB1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7366333007812	2	524.727112	1047.43967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.41	1	58.501	58.001	59.001	0.091301								0	0	0	0.17683	1	14156	14156		28.487	2.1456	1		+		223	17064	133	133	261	261					-0.08215129543850708
ADYKPTFTI	9	Unmodified	_ADYKPTFTI_					0	0	0		ENST00000417203.5_2_2:70410049-70417791:-|nuORF	ENST00000417203.5_2_2:70410049-70417791:-|nuORF	ENST00000417203.5_2_2:70410049-70417791:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.274658203125	2	528.274032	1054.53351	0.27178	0.00014358	1.1155	0.0005893	1.3873	0.00073287	528.2743997673979	80.579	0.55769	80.644	80.421	80.979	0.065094					43	22	2	0	0	0	0.20626	1	20990	20990		22.736	0.98964	1	593930			224	10330	134	134	262	262					0.008426343491237276
ADYPPPRK	8	Unmodified	_ADYPPPRK_					0	0	0			REV__nc|ENSG00000144460|Q9P242|NYAP2	REV__nc|ENSG00000144460|Q9P242|NYAP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2659912109375	2	472.253434	942.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.233	1	69.211	68.711	69.711	-0.022087								0	0	0	0.36169	1	17471	17471		9.3474	1.4373	1		+		225	16236	135	135	263	263					0.018769181002767255
ADYQLHNVQ	9	Unmodified	_ADYQLHNVQ_					0	0	0		ENSG00000154856|ENST00000355285|APCDD1	ENSG00000154856|ENST00000355285|APCDD1	ENSG00000154856|ENST00000355285|APCDD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2986450195312	2	544.261988	1086.50942	0.40612	0.00022104	-0.20817	-0.0001133	0.19795	0.00010773	544.2618509338952	43.966	0.54917	43.966	43.656	44.206	0					33	17	2	0	0	0	0.1939	1	9710	9710		30.637	6.616	1	445560			226	5149	136	136	264	264					-0.030372060845593296
ADYQLHNVQ	9	Unmodified	_ADYQLHNVQ_					0	0	0		ENSG00000154856|ENST00000355285|APCDD1	ENSG00000154856|ENST00000355285|APCDD1	ENSG00000154856|ENST00000355285|APCDD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.298583984375	2	544.261988	1086.50942	0.62955	0.00034264	-0.80951	-0.00044059	-0.17996	-9.7946E-05	544.2614669161896	43.6	0.54626	43.677	43.453	43.999	0.077518					33	19	2	0	0	0	0.20651	1	9655	9655		20.454	11.071	1	603580			227	5149	136	136	265	265					-0.030372060845593296
ADYQLHNVQ	9	Unmodified	_ADYQLHNVQ_					0	0	0		ENSG00000154856|ENST00000355285|APCDD1	ENSG00000154856|ENST00000355285|APCDD1	ENSG00000154856|ENST00000355285|APCDD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2980346679688	2	544.261988	1086.50942	0.67461	0.00036716	-0.6832	-0.00037184	-0.008591	-4.6757E-06	544.261508452788	43.68	0.58586	43.764	43.434	44.02	0.083996					45	21	3	0	0	0	0.24688	1	9549	9549		10.074	10.074	1	457380			228	5149	136	136	266	266					-0.030372060845593296
ADYRLQLRVRD	11	Unmodified	_ADYRLQLRVRD_					0	0	0			REV__nc|ENSG00000150893|Q5SZK8-2|FREM2	REV__nc|ENSG00000150893|Q5SZK8-2|FREM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.23681640625	3	468.928392	1403.76335	0.060292	2.8273E-05	0.029796	1.3972E-05	0.090088	4.2245E-05	468.9286935102436	34.151	0.35894	34.218	34.021	34.38	0.0667					23	12	3	0	0	0	0.33189	1	6638	6638		5.8681	1.462	1	121680	+		229	16515	137	137	267	267					0.07761441014713455
AEAAKSFGQEL	11	Unmodified	_AEAAKSFGQEL_					0	0	0			REV__ENST00000488821.1_1_2:232235419-232236686:+|nuORF	REV__ENST00000488821.1_1_2:232235419-232236686:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7916870117188	2	575.790578	1149.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.34	1	114.32	113.82	114.82	-0.019096								0	0	0	0.36839	1	29694	29694		4.1895	0	1		+		230	21581	138	138	268	268					-0.002197835988454244
AEAAKSFGQEL	11	Unmodified	_AEAAKSFGQEL_					0	0	0			REV__ENST00000488821.1_1_2:232235419-232236686:+|nuORF	REV__ENST00000488821.1_1_2:232235419-232236686:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7930297851562	2	575.790578	1149.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.07	1	113.08	112.58	113.58	0.014824								0	0	0	0.36839	1	29420	29420		4.1895	0.24511	1		+		231	21581	138	138	269	269					-0.002197835988454244
AEARRRSWFR	10	Unmodified	_AEARRRSWFR_					0	0	0			REV__ENSG00000142444|ENST00000270502|TIMM29	REV__ENSG00000142444|ENST00000270502|TIMM29	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.2314147949219	3	445.577805	1333.71158	0.37539	0.00016727	-0.80551	-0.00035892	-0.43012	-0.00019165	445.57748941635464	89.144	0.93976	89.143	88.611	89.551	-0.00080872					69	41	2	0	0	0	0.32148	1	23495	23495		0.50596	0.051438	1	130800	+		232	16115	139	139	270	270					0.05807742111483094
AEATFIMASYM	11	Unmodified	_AEATFIMASYM_					0	0	0		ENSG00000054690|ENST00000329153|PLEKHH1;ENST00000561370.5_1_14:68053648-68053949:+|nuORF	ENSG00000054690|ENST00000329153|PLEKHH1	ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.321044921875	2	617.777767	1233.54098	0.24879	0.0001537	-1.5048	-0.00092965	-1.256	-0.00077595	617.777092558717	70.691	0.33495	70.691	70.512	70.847	0					25	11	3	0	0	0	0.32477	1	17911	17911		16.149	1.3108	1	180370			233	693	140	140	271	271					-0.066447174371433
AEDRCRRAVEV	11	Unmodified	_AEDRCRRAVEV_					0	0	0			REV__ENST00000392582.2_1_2:172930337-172937166:+|nuORF	REV__ENST00000392582.2_1_2:172930337-172937166:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8821105957031	3	435.222699	1302.64627	-0.12427	-5.4086E-05	3.7989	0.0016534	3.6747	0.0015993	435.2250874605976	23.129	0.62647	23.084	22.817	23.444	-0.044867					43	22	3	0	0	0	0.33287	1	3430	3430		2.8433	0.21205	1	75282	+		234	17742	141	141	272	272					0.007049598034654991
AEDWSAMQQSL	11	Unmodified	_AEDWSAMQQSL_					0	0	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.8963317871094	3	422.52041	1264.5394	0.20276	8.567E-05	0.22742	9.6089E-05	0.43018	0.00018176	422.52042526234703	40.118	0.64388	40.21	39.994	40.637	0.09267					31	22	2	0	0	0	0.33085	1	8581	8581		1.3296	0	1	160600	+		235	13924	142	142	273	273					-0.08228635201521683
AEDWSAMQQSL	11	Unmodified	_AEDWSAMQQSL_					0	0	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.89630126953125	3	422.52041	1264.5394	0.15635	6.6062E-05	0.50334	0.00021267	0.6597	0.00027873	422.85495857189295	40.159	0.54801	40.259	40.118	40.666	0.099407					28	19	2	0	0	0	0.32951	1	8573	8573		0.064406	0	1	168730	+		236	13924	142	142	274	274					-0.08228635201521683
AEEYVYFHGF	10	Unmodified	_AEEYVYFHGF_					0	0	0		ENST00000477532.5_1_7:117876918-117879963:+|nuORF	ENST00000477532.5_1_7:117876918-117879963:+|nuORF	ENST00000477532.5_1_7:117876918-117879963:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.5832214355469	3	421.188989	1260.54514	0.21326	8.9821E-05	-0.79821	-0.0003362	-0.58496	-0.00024638	421.1890091265428	46.748	0.13748	46.8	46.679	46.817	0.052574					6	4	2	0	0	0	0.32033	1	10549	10549		2.086	0	1	65659			237	10959	143	143	275	275					-0.0747116862760322
AEFALDPTF	9	Unmodified	_AEFALDPTF_					0	0	0			REV__nc|ENSG00000106976|Q05193-5|DNM1	REV__nc|ENSG00000106976|Q05193-5|DNM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.27691650390625	2	505.745108	1009.47566	0.67315	0.00034044	-0.785	-0.00039701	-0.11186	-5.6572E-05	505.74467239533243	77.732	0.5418	77.787	77.571	78.112	0.055412					33	19	2	0	0	0	0.25202	1	20029	20029		10.824	1.4765	1	153940	+		238	22932	144	144	276	276					-0.028696275763536505
AEFALDPTF	9	Unmodified	_AEFALDPTF_					0	0	0			REV__nc|ENSG00000106976|Q05193-5|DNM1	REV__nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	505.745108	1009.47566	0.72074	0.00036451	-0.011454	-5.7927E-06	0.70929	0.00035872	505.74468177860814	77.821	0.47937	77.821	77.526	78.005	0	0.0089604	0.00045331	NaN	10.824	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147070	+		239	22932	144	144							-0.028696275763536505
AEFALDPTF	9	Unmodified	_AEFALDPTF_					0	0	0			REV__nc|ENSG00000106976|Q05193-5|DNM1	REV__nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	505.745108	1009.47566	0.82462	0.00041705	-0.41385	-0.0002093	0.41077	0.00020775	505.74469494325655	77.858	0.67987	77.827	77.542	78.221	-0.031334	0.015122	4.6299E-05	NaN	10.824	35	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167600	+		240	22932	144	144							-0.028696275763536505
AEFFAVGTKF	10	Unmodified	_AEFFAVGTKF_					0	0	0			REV__nc|ENSG00000160360|Q86YR5-3|GPSM1	REV__nc|ENSG00000160360|Q86YR5-3|GPSM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.8001708984375	2	558.78985	1115.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.047	1	66.034	65.534	66.534	-0.013588								0	0	0	0.30188	1	16498	16498		27.629	0	1		+		241	16899	145	145	277	277					0.011986271030536955
AEFGDLQNLL	10	Unmodified	_AEFGDLQNLL_					0	0	0			REV__ENST00000579147.5_1_17:61906826-61909326:+|nuORF	REV__ENST00000579147.5_1_17:61906826-61909326:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.25341796875	2	560.287671	1118.56079	0.31785	0.00017809	-1.0942	-0.00061305	-0.77632	-0.00043496	560.2866524128825	82.167	0.55251	82.143	81.813	82.365	-0.024048					38	21	3	0	0	0	0.3144	1	21470	21470		13.042	1.4022	1	223210	+		242	13989	146	146	278	278					0.0062511788946721936
AEFGDLQNLL	10	Unmodified	_AEFGDLQNLL_					0	0	0			REV__ENST00000579147.5_1_17:61906826-61909326:+|nuORF	REV__ENST00000579147.5_1_17:61906826-61909326:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.287671	1118.56079	0.33148	0.00018572	-0.81513	-0.00045671	-0.48366	-0.00027099	560.287164548507	82.07	0.3674	82.07	81.894	82.262	0	-0.043361	0.00011136	NaN	13.042	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301180	+		243	13989	146	146							0.0062511788946721936
AEFGDLQNLL	10	Unmodified	_AEFGDLQNLL_					0	0	0			REV__ENST00000579147.5_1_17:61906826-61909326:+|nuORF	REV__ENST00000579147.5_1_17:61906826-61909326:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.287671	1118.56079	0.20911	0.00011716	-0.85508	-0.00047909	-0.64598	-0.00036193	560.2870988826455	82.057	0.55188	82.126	81.758	82.31	0.068993	0.013218	6.6598E-05	NaN	13.042	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286130	+		244	13989	146	146							0.0062511788946721936
AEFSDTNILDP	11	Unmodified	_AEFSDTNILDP_					0	0	0		ENST00000487084.1_1_7:105550697-105550985:+|nuORF	ENST00000487084.1_1_7:105550697-105550985:+|nuORF	ENST00000487084.1_1_7:105550697-105550985:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.5564880371094	3	407.859309	1220.5561	0.13576	5.5371E-05	1.4843	0.00060539	1.6201	0.00066076	408.5281671208132	21.645	0.95077	21.545	21.043	21.994	-0.10034					73	33	4	0	0	0	0.33175	1	2886	2886		2.2527	0	1	92555			245	11113	147	147	279	279					-0.04535811043956528
AEGAFRGL	8	Unmodified	_AEGAFRGL_					0	0	0		nc|ENSG00000100399|Q6NUI6-2|CHADL;ENSG00000100399|ENST00000216241|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2323913574219	2	410.719227	819.423902	0.14905	6.1219E-05	-0.053755	-2.2078E-05	0.095297	3.914E-05	410.71915539578976	26.288	0.70922	26.266	25.991	26.7	-0.022236					52	24	3	0	0	0	0.34092	1	4378	4378		4.756	0	1	236880			246	1588	148	148	280	280					0.00696673520440072
AEGIPLLGIL	10	Unmodified	_AEGIPLLGIL_					0	0	0		nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF	nc|ENSG00000152223|Q9HCE0-2|EPG5	nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7476806640625	2	498.310418	994.606283	0.65057	0.00032419	-1.9102	-0.00095186	-1.2596	-0.00062767	498.30946323817557	83.788	0.1239	83.788	83.711	83.835	0					6	4	2	0	0	0	0.318	1	21926	21926		7.2892	2.5332	1	57898			247	5007	149	149	281	281					0.1087638814251477
AEGRTHSLI	9	Unmodified	_AEGRTHSLI_					0	0	0			REV__SPPL2C|p.L269Cfs*66|1|0.17|ENSG00000185294|chr17:45845711-45845711|C/-|frameshift_variant	REV__SPPL2C|p.L269Cfs*66|1|0.17|ENSG00000185294|chr17:45845711-45845711|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.80126953125	2	492.267073	982.519593	0.49558	0.00024396	0.28177	0.0001387	0.77735	0.00038266	492.2671748516782	29.039	0.79087	29.039	28.76	29.551	0					56	28	3	0	0	0	0.24471	1	5168	5168		17.113	0	1	377820	+		248	18370	150	150	282	282					0.027634016406864248
AEGRTHSLI	9	Unmodified	_AEGRTHSLI_					0	0	0			REV__SPPL2C|p.L269Cfs*66|1|0.17|ENSG00000185294|chr17:45845711-45845711|C/-|frameshift_variant	REV__SPPL2C|p.L269Cfs*66|1|0.17|ENSG00000185294|chr17:45845711-45845711|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8012390136719	2	492.267073	982.519593	0.20343	0.00010014	0.54795	0.00026974	0.75138	0.00036988	492.2672378654311	29.023	0.69319	29.036	28.728	29.421	0.013474					53	24	3	0	0	0	0.24471	1	5165	5165		17.113	1.2657	1	375510	+		249	18370	150	150	283	283					0.027634016406864248
AEHECMDGL	9	Unmodified	_AEHECMDGL_					0	0	0			REV__ENSG00000092067|ENST00000206513|CEBPE	REV__ENSG00000092067|ENST00000206513|CEBPE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.76910400390625	2	502.694235	1003.37392	0.34627	0.00017407	1.4833	0.00074563	1.8295	0.0009197	502.69483557976673	70.659	0.33324	70.72	70.546	70.88	0.060783					16	11	2	0	0	0	0.25526	1	17889	17889		4.3292	0	1	127360	+		250	14077	151	151	284	284					-0.1276356526203699
AEIIQDVPEEF	11	Unmodified	_AEIIQDVPEEF_					0	0	0		nc|ENSG00000185019|O94941-2|UBOX5;ENSG00000185019|ENST00000217173|UBOX5	nc|ENSG00000185019|O94941-2|UBOX5	nc|ENSG00000185019|O94941-2|UBOX5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.59423828125	3	430.546842	1288.6187	-0.63146	-0.00027187	0.79534	0.00034243	0.16388	7.0559E-05	430.88158932036725	35.348	0.64206	35.426	35.167	35.809	0.077377					40	22	3	0	0	0	0.31295	1	7030	7030		10.527	0	1	529680			251	7498	152	152	285	285					-0.014066649757523919
AEIRQQFRSL	10	Unmodified	_AEIRQQFRSL_					0	0	0		PPP2R1B|p.I361Yfs*14|1|0.3|ENSG00000137713|chr11:111753526-111753527|TT/-|frameshift_variant;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B	PPP2R1B|p.I361Yfs*14|1|0.3|ENSG00000137713|chr11:111753526-111753527|TT/-|frameshift_variant	PPP2R1B|p.I361Yfs*14|1|0.3|ENSG00000137713|chr11:111753526-111753527|TT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.5667419433594	3	416.566683	1246.67822	0.037338	1.5554E-05	-0.10701	-4.4579E-05	-0.069677	-2.9025E-05	416.5665669076653	22.773	0.62471	22.728	22.409	23.033	-0.044867					55	21	3	0	0	0	0.31867	1	3272	3272		11.518	0	1	144030			252	4069	153	153	286	286					0.06474695548968157
AEIYTLAAMHR	11	Unmodified	_AEIYTLAAMHR_					0	0	0		HIVEP2|p.K1731Ifs*8|1|0.06|ENSG00000010818|chr6:142768532-142768533|-/GAAAGCTGAAAGTAAA|frameshift_variant;ENSG00000010818|ENST00000367603|HIVEP2	HIVEP2|p.K1731Ifs*8|1|0.06|ENSG00000010818|chr6:142768532-142768533|-/GAAAGCTGAAAGTAAA|frameshift_variant	HIVEP2|p.K1731Ifs*8|1|0.06|ENSG00000010818|chr6:142768532-142768533|-/GAAAGCTGAAAGTAAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.5550842285156	3	425.888657	1274.64414	0.13927	5.9315E-05	-0.9528	-0.00040579	-0.81352	-0.00034647	425.88912623849	29.401	0.54319	29.401	29.142	29.686	0					45	19	3	0	0	0	0.33025	1	5262	5262		6.2344	0	1	166000			253	429	154	154	287	287					0.01780531065651303
AEKEELKK	8	Unmodified	_AEKEELKK_					0	0	0			REV__ENST00000503074.1_1_5:35700583-35709228:+|nuORF	REV__ENST00000503074.1_1_5:35700583-35709228:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7796325683594	2	487.779482	973.544411	0.32383	0.00015796	-0.28847	-0.00014071	0.035365	1.725E-05	487.77923291422513	17.333	0.57083	17.272	17.079	17.65	-0.060429					28	19	2	0	0	0	0.4354	1	1603	1603		10.824	3.215	1	84628	+		254	16586	155	155	288	288					0.056580367233777906
AEKNKEEK	8	Unmodified	_AEKNKEEK_					0	0	0		ENST00000234739.7_1_1:147078631-147083609:+|nuORF	ENST00000234739.7_1_1:147078631-147083609:+|nuORF	ENST00000234739.7_1_1:147078631-147083609:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2586975097656	2	488.258914	974.503274	0.092107	4.4972E-05	0.084911	4.1458E-05	0.17702	8.643E-05	488.25893277313287	16.696	1.866	16.582	15.921	17.787	-0.11434					155	65	3	0	0	0	0.4354	1	1605	1605		10.824	0	1	1158800			255	8872	156	156	289	289					0.015002756839066933
AEKNVTNTP	9	Unmodified	_AEKNVTNTP_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.779541015625	2	487.251089	972.487624	0.075595	3.6834E-05	-0.24274	-0.00011828	-0.16714	-8.1441E-05	487.25102297440964	17.071	0.6662	16.953	16.72	17.386	-0.11739					40	23	2	0	0	0	0.26068	1	1623	1623		3.2813	3.2813	1	193570			256	7974	157	157	290	290					0.0002798916684696451
AEKREFRFQL	10	Unmodified	_AEKREFRFQL_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.9102478027344	3	441.910449	1322.70952	-1.26	-0.00055683	0.66298	0.00029298	-0.59706	-0.00026385	441.91068153327774	34.956	0.98542	35.031	34.444	35.429	0.075306					94	35	4	0	0	0	0.39145	1	6986	6986		5.0475	1.2016	1	564950			257	4987	158	158	291	291					0.061072685830367845
AEKRLPGP	8	Unmodified	_AEKRLPGP_					0	0	0		nc|nan|Q8N6N3-3|C1orf52;ENST00000294661.8_1_1:85724720-85725334:-|nuORF;nc|nan|Q8N6N3-2|C1orf52;ENSG00000162642|ENST00000471115|C1orf52	nc|nan|Q8N6N3-3|C1orf52	nc|nan|Q8N6N3-3|C1orf52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.5711975097656	2	434.255977	866.497401	-0.18272	-7.9348E-05	-1.1421	-0.00049598	-1.3249	-0.00057532	434.25569342712333	19.314	0.19324	19.258	19.144	19.337	-0.055691					8	6	2	0	0	0	0.344	1	2201	2201		2.5775	0	1	14573			258	5593	159	159	292	292					0.05881221962897598
AEKRLPKG	8	Unmodified	_AEKRLPKG_					0	0	0		ENST00000417354.2_1_1:172111315-172113574:-|nuORF	ENST00000417354.2_1_1:172111315-172113574:-|nuORF	ENST00000417354.2_1_1:172111315-172113574:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7768859863281	2	449.777077	897.5396	0.099529	4.4766E-05	-0.38981	-0.00017533	-0.29028	-0.00013056	449.77683800288906	18.058	1.3166	18.058	17.69	19.006	0					104	45	4	0	0	0	0.16948	1	1854	1854		48.346	4.4876	1	1078600			259	10333	160	160	293	293					0.08673197371274455
AELDSQVKILP	11	Unmodified	_AELDSQVKILP_					0	0	0			REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8333740234375	2	606.845353	1211.67615	0.71215	0.00043216	-1.4016	-0.00085057	-0.68948	-0.00041841	606.8450892766035	47.403	0.41423	47.403	47.244	47.658	0					23	14	2	0	0	0	0.32951	1	10835	10835		8.7454	2.5396	1	138580	+		260	14208	161	161	294	294					0.07878222020485737
AELQEMTMEE	10	Unmodified	_AELQEMTMEE_					0	0	0			REV__THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	REV__THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3701171875	2	605.751946	1209.48934	0.41066	0.00024876	2.0791	0.0012594	2.4898	0.0015082	605.7533000350905	88.483	0.31386	88.48	88.382	88.696	-0.0028458					19	14	2	0	0	0	0.31889	1	23349	23349		1.3295	0	1	76992	+		261	15277	162	162	295	295					-0.10702505921676675
AELRRNFMNI	10	Unmodified	_AELRRNFMNI_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.89239501953125	3	421.892401	1262.65538	0.1595	6.7293E-05	1.1862	0.00050045	1.3457	0.00056774	421.8922810406543	26.448	0.7593	26.425	26.158	26.918	-0.022236					84	26	5	0	0	0	0.38773	1	4449	4449		3.0723	0.44103	1	269900			262	2362	163	163	296	296					0.034553531598476184
AELVRTEKDF	10	Unmodified	_AELVRTEKDF_					0	0	0			REV__nc|ENSG00000142609|Q9C0B2|CFAP74	REV__nc|ENSG00000142609|Q9C0B2|CFAP74	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.21466064453125	3	403.215427	1206.62445	-0.098909	-3.9882E-05	-4.3578	-0.0017571	-4.4567	-0.001797	403.21410579272145	30.271	0.47842	30.299	30.131	30.61	0.027948					29	16	3	0	0	0	0.38745	1	5530	5530		5.7834	1.0675	1	106290	+		263	16128	164	164	297	297					0.029404783265590595
AELVRTEKDF	10	Unmodified	_AELVRTEKDF_					0	0	0			REV__nc|ENSG00000142609|Q9C0B2|CFAP74	REV__nc|ENSG00000142609|Q9C0B2|CFAP74	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	403.215427	1206.62445	-0.012815	-5.1674E-06	-2.9609	-0.0011939	-2.9737	-0.001199	403.21415759504083	30.261	0.4369	30.261	30.088	30.525	0	-0.018878	0.0001633	NaN	5.7834	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53400	+		264	16128	164	164							0.029404783265590595
AELVRTEKDF	10	Unmodified	_AELVRTEKDF_					0	0	0			REV__nc|ENSG00000142609|Q9C0B2|CFAP74	REV__nc|ENSG00000142609|Q9C0B2|CFAP74	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	403.215427	1206.62445	-0.098909	-3.9882E-05	-4.3578	-0.0017571	-4.4567	-0.001797	403.21410579272145	30.271	0.47842	30.299	30.131	30.61	0.027948	0.018878	-0.0015265	NaN	5.7834	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106290	+		265	16128	164	164							0.029404783265590595
AELYQKEGI	9	Unmodified	_AELYQKEGI_					0	0	0		ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7591552734375	2	525.776939	1049.53933	0.4168	0.00021914	-3.1588	-0.0016608	-2.742	-0.0014417	525.7750096042553	19.317	0.37192	19.262	19.08	19.452	-0.055693					25	12	3	0	0	0	0.26612	1	2238	2238		13.906	1.6654	1	82317			266	3973	165	165	298	298					0.016537328607682866
AENYTSIL	8	Unmodified	_AENYTSIL_					0	0	0		ENSG00000179399|ENST00000377067|GPC5	ENSG00000179399|ENST00000377067|GPC5	ENSG00000179399|ENST00000377067|GPC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2261657714844	2	455.729458	909.444362	0.35302	0.00016088	1.3078	0.00059601	1.6608	0.00075689	455.7308077875883	83.045	0.72185	83.045	82.651	83.373	0					40	27	2	0	0	0	0.34218	1	21639	21639		0.6015	0.076735	1	124850			267	7121	166	166	299	299					-0.013982006104129141
AEPGLLFHL	9	Unmodified	_AEPGLLFHL_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2395324707031	2	498.779285	995.544017	0.17019	8.4887E-05	-0.55535	-0.000277	-0.38516	-0.00019211	498.77934363848465	16.468	0.25729	16.354	16.219	16.476	-0.11434					14	8	2	0	0	0	0.25526	1	1314	1314		7.9102	2.6795	1	30184	+		268	13885	167	167	300	300					0.046066617941846744
AEPRERAI	8	Unmodified	_AEPRERAI_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;ENST00000470139.1_2_1:43893713-43894182:+|nuORF	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.26165771484375	2	471.261791	940.509028	-0.1323	-6.2348E-05	-0.14508	-6.8369E-05	-0.27738	-0.00013072	471.26169001373427	24.942	0.58351	24.911	24.653	25.237	-0.031408					50	19	3	0	0	0	0.32937	1	3899	3899		22.736	0.078198	1	247660			269	8049	168	168	301	301					0.03639418986222154
AEQAEEAVPEF	11	Unmodified	_AEQAEEAVPEF_					0	0	0		ENST00000488221.5_1_17:18156710-18157010:-|nuORF;ENST00000578558.5_1_17:18156710-18156993:-|nuORF	ENST00000488221.5_1_17:18156710-18157010:-|nuORF	ENST00000488221.5_1_17:18156710-18157010:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.2775268554688	2	610.2775	1218.54045	0.55944	0.00034141	0.29079	0.00017746	0.85023	0.00051888	610.2771837722311	54.679	0.51075	54.663	54.361	54.872	-0.015923					39	17	3	0	0	0	0.19074	1	13002	13002		32.037	1.4009	1	728980			270	11134	169	169	302	302					-0.06008097561016257
AEQDWSKIF	9	Unmodified	_AEQDWSKIF_					0	0	0			REV__ENST00000578921.5_1_18:9860502-9860658:+|nuORF	REV__ENST00000578921.5_1_18:9860502-9860658:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.2744140625	2	562.274564	1122.53457	0.4005	0.00022519	-0.81749	-0.00045965	-0.41698	-0.00023446	562.2745345343371	56.824	1.0976	56.824	56.398	57.495	0					74	40	3	0	0	0	0.14786	1	13630	13630		31.268	8.5321	1	497700	+		271	22470	170	170	303	303					-0.021791512820072967
AEQDWSKIF	9	Unmodified	_AEQDWSKIF_					0	0	0			REV__ENST00000578921.5_1_18:9860502-9860658:+|nuORF	REV__ENST00000578921.5_1_18:9860502-9860658:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.27490234375	2	562.274564	1122.53457	0.47258	0.00026572	-1.0138	-0.00057006	-0.54127	-0.00030434	562.2748148974922	56.853	0.87701	56.833	56.592	57.469	-0.019077					74	31	3	0	0	0	0.14786	1	13678	13678		31.268	3.6395	1	703890	+		272	22470	170	170	304	304					-0.021791512820072967
AEQLMTLI	8	Unmodified	_AEQLMTLI_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-3|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.25469970703125	2	459.751879	917.489204	0.090633	4.1669E-05	0.76438	0.00035143	0.85501	0.00039309	459.75213485621873	62.807	0.4858	62.807	62.526	63.011	0					24	17	2	0	0	0	0.31934	1	15490	15490		24.674	13.034	1	160450			273	8071	171	171	305	305					0.02715906931268819
AEQYTFIFD	9	Unmodified	_AEQYTFIFD_					0	0	0			REV__ENST00000355621.7_1_7:129473761-129473995:-|nuORF	REV__ENST00000355621.7_1_7:129473761-129473995:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2800903320312	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116	1	116	115.5	116.5	0								0	0	0	0.24264	1	30050	30050		8.7454	2.0222	1		+		274	20192	172	172	306	306					-0.05326259893195129
AEREIRFMFPE	11	Unmodified	_AEREIRFMFPE_					0	0	0		ENSG00000112981|ENST00000265191|NME5;ENST00000508252.1_1_5:137463382-137465094:-|nuORF	ENSG00000112981|ENST00000265191|NME5	ENSG00000112981|ENST00000265191|NME5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.81085205078125	3	475.571216	1423.69182	0.22295	0.00010603	-0.19223	-9.1417E-05	0.030722	1.461E-05	475.5711115762709	37.718	0.48957	37.815	37.604	38.093	0.097527					25	17	2	0	0	0	0.33296	1	7740	7740		2.6312	0	1	195420			275	2467	173	173	307	307					-0.0030781473415117944
AERLWRLP	8	Unmodified	_AERLWRLP_					0	0	0		ENST00000419769.6_1_10:127408273-127409798:+|nuORF	ENST00000419769.6_1_10:127408273-127409798:+|nuORF	ENST00000419769.6_1_10:127408273-127409798:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2898559570312	2	520.803626	1039.5927	0.5869	0.00030566	2.6197	0.0013643	3.2066	0.00167	520.8050753341216	29.829	0.55871	29.829	29.441	29.999	0					33	19	2	0	0	0	0.44389	1	5385	5385		7.9102	0.62092	1	138320			276	10355	174	174	308	308					0.07448575153944148
AERSFFEI	8	Unmodified	_AERSFFEI_					0	0	0			REV__ENSG00000257727|ENST00000273308|CNPY2	REV__ENSG00000257727|ENST00000273308|CNPY2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7509765625	2	499.750724	997.486896	0.32801	0.00016392	0.090649	4.5302E-05	0.41866	0.00020922	499.75067827186547	57.136	0.63118	57.117	56.838	57.469	-0.019081					53	22	3	0	0	0	0.3474	1	13769	13769		25.399	3.6527	1	1267100	+		277	19264	175	175	309	309					-0.011948054821914411
AESAAVKNPS	10	Unmodified	_AESAAVKNPS_					0	0	0			REV__ENST00000433126.1_1_20:61294828-61296510:-|nuORF	REV__ENST00000433126.1_1_20:61294828-61296510:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7850646972656	2	487.251089	972.487624	0.55986	0.00027279	-1.0669	-0.00051985	-0.50705	-0.00024706	487.25074595950025	20.98	0.53856	20.87	20.525	21.063	-0.11003					22	18	2	0	0	0	0.31267	1	2618	2618		14.838	4.0143	1	43785	+		278	20963	176	176	310	310					0.0002798916684696451
AESAAVKNPS	10	Unmodified	_AESAAVKNPS_					0	0	0			REV__ENST00000433126.1_1_20:61294828-61296510:-|nuORF	REV__ENST00000433126.1_1_20:61294828-61296510:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	487.251089	972.487624	0.40329	0.0001965	-2.3161	-0.0011285	-1.9128	-0.00093203	487.2508159144943	20.926	0.51228	20.926	20.514	21.026	0	0.028055	-0.00075991	NaN	14.838	28	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36225	+		279	20963	176	176							0.0002798916684696451
AESLFLPR	8	Unmodified	_AESLFLPR_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2246398925781	2	466.763635	931.512717	-0.31193	-0.0001456	-2.6953	-0.0012581	-3.0072	-0.0014037	466.7625300890029	13.513	0.15992	13.414	13.306	13.466	-0.099291					9	5	2	0	0	0	0.34408	1	443	443		2.3027	0	1	20071			280	8471	177	177	311	311					0.044220887600772585
AESLWFEFDR	10	Unmodified	_AESLWFEFDR_					0	0	0			REV__nc|ENSG00000163554|P02549-2|SPTA1	REV__nc|ENSG00000163554|P02549-2|SPTA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.23760986328125	3	433.87166	1298.59315	-0.15599	-6.7682E-05	2.6317	0.0011418	2.4757	0.0010741	433.87276461243425	26.41	0.36256	26.371	26.126	26.489	-0.038671					17	12	2	0	0	0	0.32068	1	4379	4379		3.5871	1.1523	1	47399	+		281	17069	178	178	312	312					-0.0442009470755238
AETAQTIKK	9	Unmodified	_AETAQTIKK_					0	0	0		ENST00000495743.1_1_X:16737946-16754363:+|nuORF;ENSG00000169895|ENST00000380155|SYAP1	ENST00000495743.1_1_X:16737946-16754363:+|nuORF	ENST00000495743.1_1_X:16737946-16754363:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.77154541015625	2	495.284931	988.55531	0.11054	5.4751E-05	-3.5748	-0.0017706	-3.4643	-0.0017158	495.283382980638	14.692	0.38799	14.692	14.561	14.949	0					28	13	3	0	0	0	0.25202	1	795	795		10.824	0.024421	1	113750			282	6398	179	179	313	313					0.06057439097673978
AETLPAGF	8	Unmodified	_AETLPAGF_					0	0	0		nc|ENSG00000143847|O75335|PPFIA4;nc|ENSG00000143847|O75335-2|PPFIA4;nc|ENSG00000143847|O75335-1|PPFIA4;ENSG00000143847|ENST00000295706|PPFIA4;ENST00000486360.1_1_1:203032958-203044890:+|nuORF	nc|ENSG00000143847|O75335|PPFIA4	nc|ENSG00000143847|O75335|PPFIA4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2156066894531	2	403.208161	804.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.69	1	22.602	22.102	23.102	-0.087608								0	0	0	0.3683	1	3224	3224		6.3541	0	1				283	12735	180	180	314	314					-0.008255509479909051
AEVDVNQKLLL	11	Unmodified	_AEVDVNQKLLL_					0	0	0			REV__ENSG00000101752|ENST00000261537|MIB1	REV__ENSG00000101752|ENST00000261537|MIB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.3587036132812	2	621.358628	1240.7027	0.29214	0.00018152	0.043653	2.7124E-05	0.33579	0.00020865	621.3585963957225	73.119	0.91076	73.119	72.827	73.738	0					91	32	4	0	0	0	0.075948	2	18674	18674;18720		45.74	20.749	1	2067700	+		284	14286	181	181	315;316	315					0.09197910911802865
AEVDVNQKLLL	11	Unmodified	_AEVDVNQKLLL_					0	0	0			REV__ENSG00000101752|ENST00000261537|MIB1	REV__ENSG00000101752|ENST00000261537|MIB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.3588256835938	2	621.358628	1240.7027	0.0058933	3.6618E-06	0.33406	0.00020757	0.33995	0.00021123	621.3587104790286	73.073	0.81958	73.127	72.843	73.663	0.053841					93	29	5	0	0	0	0.1175	3	18652	18652;18694;18740		38.615	26.021	1	2044800	+		285	14286	181	181	317;318;319	317					0.09197910911802865
AEVDVNQKLLL	11	Unmodified	_AEVDVNQKLLL_					0	0	0			REV__ENSG00000101752|ENST00000261537|MIB1	REV__ENSG00000101752|ENST00000261537|MIB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.358642578125	2	621.358628	1240.7027	0.28786	0.00017887	-0.035475	-2.2042E-05	0.25239	0.00015682	621.3585530689866	73.141	0.89815	73.111	72.846	73.744	-0.029305					97	32	4	0	0	0	0.1175	2	18674	18674;18718		38.615	12.676	1	2092600	+		286	14286	181	181	320;321	320					0.09197910911802865
AEVMVSLF	8	Unmodified	_AEVMVSLF_					0	0	0			REV__ENST00000568395.1_1_16:2721378-2721618:-|nuORF	REV__ENST00000568395.1_1_16:2721378-2721618:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2425231933594	2	448.233322	894.45209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.464	1	46.464	45.964	46.964	0								0	0	0	0.35014	1	10472	10472		14.582	0	1		+		287	22392	182	182	322	322					0.0006423538550279773
AEWFYIKYGQI	11	Unmodified	_AEWFYIKYGQI_					0	0	0			REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.75604248046875	3	473.243206	1416.70779	0.161	7.6191E-05	-0.93293	-0.0004415	-0.77194	-0.00036531	473.57740595093645	30.535	0.44938	30.535	30.225	30.674	0					27	15	3	0	0	0	0.33287	1	5601	5601		2.8433	0	1	144020	+		288	13712	183	183	323	323					0.016102147744049944
AEWWATQAF	9	Unmodified	_AEWWATQAF_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.258544921875	2	555.256174	1108.49779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.71	1	117.69	117.19	118.19	-0.024147								0	0	0	0.26513	1	30456	30456		1.4819	0.28856	1				289	6727	184	184	324	324					-0.05211403107909973
AEYDHHFIF	9	Unmodified	_AEYDHHFIF_					0	0	0			REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3434448242188	2	589.766906	1177.51926	0.50915	0.00030028	-1.6006	-0.00094399	-1.0915	-0.00064371	589.7641135620795	89.043	0.4193	89.043	88.672	89.092	0					29	17	2	0	0	0	0.25938	1	23491	23491		4.3292	1.0479	1	106080	+		290	13180	185	185	325	325					-0.06240018079188303
AEYDHHFIF	9	Unmodified	_AEYDHHFIF_					0	0	0			REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8446044921875	2	589.766906	1177.51926	0.37194	0.00021936	1.0655	0.00062839	1.4374	0.00084775	590.2713818759028	91.626	0.54721	91.626	91.338	91.885	0					48	40	2	0	0	0	0.25526	1	24328	24328		7.9102	0.62092	1	84838	+		291	13180	185	185	326	326					-0.06240018079188303
AEYDHHFIF	9	Unmodified	_AEYDHHFIF_					0	0	0			REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3433837890625	2	589.766906	1177.51926	0.17022	0.00010039	1.9725	0.0011633	2.1428	0.0012637	590.2715396790602	95.559	0.16543	95.559	95.483	95.648	0					27	18	2	0	0	0	0.25526	1	25512	25512		7.9102	1.5561	1	152590	+		292	13180	185	185	327	327					-0.06240018079188303
AEYDHHFIF	9	Unmodified	_AEYDHHFIF_					0	0	0			REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3428344726562	2	589.766906	1177.51926	0.42112	0.00024836	1.2391	0.00073076	1.6602	0.00097912	590.2714027941264	90.666	0.53928	90.666	90.369	90.909	0					70	42	2	0	0	0	0.24913	1	23968	23968		12.532	3.9383	1	130210	+		293	13180	185	185	328	328					-0.06240018079188303
AEYDHHFIF	9	Unmodified	_AEYDHHFIF_					0	0	0			REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3428344726562	2	589.766906	1177.51926	0.13768	8.1197E-05	-1.6406	-0.0009676	-1.503	-0.0008864	589.7640041157997	113.62	0.031822	113.6	113.58	113.61	-0.017303					5	3	2	0	0	0	0.26145	1	29533	29533		2.0598	0.86641	1	18434	+		294	13180	185	185	329	329					-0.06240018079188303
AEYDHHFIF	9	Unmodified	_AEYDHHFIF_					0	0	0			REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.34423828125	2	589.766906	1177.51926	0.13626	8.036E-05	-2.1841	-0.0012881	-2.0478	-0.0012077	589.7639778233585	112.87	0.043472	112.86	112.83	112.87	-0.017303					6	5	2	0	0	0	0.26145	1	29351	29351		2.0598	0.40713	1	26524	+		295	13180	185	185	330	330					-0.06240018079188303
AEYDHHFIF	9	Unmodified	_AEYDHHFIF_					0	0	0			REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3427124023438	2	589.766906	1177.51926	0.3599	0.00021226	1.3163	0.00077634	1.6762	0.0009886	590.2710946526784	91.703	0.30695	91.793	91.657	91.964	0.090668					26	18	2	0	0	0	0.25879	1	24318	24318		4.756	0.81161	1	85907	+		296	13180	185	185	331	331					-0.06240018079188303
AEYDHHFIF	9	Unmodified	_AEYDHHFIF_					0	0	0			REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3433837890625	2	589.766906	1177.51926	0.42767	0.00025222	0.15511	9.1479E-05	0.58278	0.0003437	589.7645455676081	89.394	0.52621	89.485	89.122	89.648	0.090569					53	31	2	0	0	0	0.25526	1	23660	23660		7.9102	1.5561	1	108700	+		297	13180	185	185	332	332					-0.06240018079188303
AEYDHHFIF	9	Unmodified	_AEYDHHFIF_					0	0	0			REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3427734375	2	589.766906	1177.51926	0.36825	0.00021718	1.6888	0.00099597	2.057	0.0012132	590.2714600438507	91.439	0.33148	91.53	91.326	91.657	0.090675					43	27	2	0	0	0	0.24913	1	24295	24295		12.532	2.4576	1	126110	+		298	13180	185	185	333	333					-0.06240018079188303
AEYDHHFIF	9	Unmodified	_AEYDHHFIF_					0	0	0			REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3438720703125	2	589.766906	1177.51926	0.42425	0.00025021	2.0714	0.0012217	2.4957	0.0014719	590.2715420030206	88.247	0.78168	88.337	87.766	88.548	0.089195					59	40	2	0	0	0	0.24913	1	23301	23301		7.9102	3.5809	1	112600	+		299	13180	185	185	334	334					-0.06240018079188303
AEYDHHFIF	9	Unmodified	_AEYDHHFIF_					0	0	0			REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3433227539062	2	589.766906	1177.51926	0.45538	0.00026857	0.54103	0.00031908	0.99641	0.00058765	590.2712642085118	88.592	1.4645	88.589	87.694	89.158	-0.0028381					98	68	2	0	0	0	0.24913	1	23223	23223		12.532	2.4576	1	111690	+		300	13180	185	185	335	335					-0.06240018079188303
AEYDHHFIF	9	Unmodified	_AEYDHHFIF_					0	0	0			REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	589.766906	1177.51926	-0.015269	-9.0052E-06	-3.0423	-0.0017943	-3.0576	-0.0018033	589.764273073548	112.74	0.049088	112.74	112.72	112.77	0	-0.059836	-0.00011948	NaN	2.0598	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19904	+		301	13180	185	185							-0.06240018079188303
AEYDHHFIF	9	Unmodified	_AEYDHHFIF_					0	0	0			REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	REV__chr13:48580956-48590486|341|10.09|0.0|19.94|-|1|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	589.766906	1177.51926	0.42739	0.00025206	-0.19396	-0.00011439	0.23343	0.00013767	589.7641473207511	88.705	0.64657	88.794	88.52	89.166	0.089195	-0.12475	0.0007546	NaN	4.3292	38	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94072	+		302	13180	185	185							-0.06240018079188303
AEYLSGTIIYK	11	Unmodified	_AEYLSGTIIYK_					0	0	0			REV__ENST00000345732.8_1_11:60237005-60237254:+|nuORF	REV__ENST00000345732.8_1_11:60237005-60237254:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.5772705078125	3	419.895695	1256.66525	-0.19429	-8.1583E-05	-1.8475	-0.00077574	-2.0417	-0.00085732	419.89506835255463	15.299	0.25967	15.235	15.1	15.36	-0.064413					21	8	3	0	0	0	0.33094	1	977	977		7.4771	0.84669	1	53411	+		303	20148	186	186	336	336					0.04718819646200245
AEYRLEFLK	9	Unmodified	_AEYRLEFLK_					0	0	0		nc|ENSG00000168026|Q8NDW8-6|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.82177734375	2	584.821681	1167.62881	0.28939	0.00016924	0.63255	0.00036993	0.92194	0.00053917	584.821876265029	44.16	0.45266	44.16	43.904	44.357	0					38	16	3	0	0	0	0.11461	1	9761	9761		36.127	2.6821	1	668210			304	6237	187	187	337	337					0.05169987540148213
AFAFSSLLRT	10	Unmodified	_AFAFSSLLRT_					0	0	0		ENST00000510968.5_1_4:184572273-184580289:-|nuORF;ENST00000326397.9_1_4:184577085-184580289:-|nuORF	ENST00000510968.5_1_4:184572273-184580289:-|nuORF	ENST00000510968.5_1_4:184572273-184580289:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.280029296875	2	556.808574	1111.60259	0.36276	0.00020199	1.2755	0.00071022	1.6383	0.0009122	556.8091454915423	45.416	0.56251	45.481	45.032	45.595	0.065048					26	20	2	0	0	0	0.31039	1	10173	10173		18.146	6.5061	1	138070			305	9414	188	188	338	338					0.051257183686630015
AFASHSFPF	9	Unmodified	_AFASHSFPF_					0	0	0		ENST00000378180.8_1_13:50678890-50679094:+|nuORF	ENST00000378180.8_1_13:50678890-50679094:+|nuORF	ENST00000378180.8_1_13:50678890-50679094:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3135681152344	2	505.74016	1009.46577	0.44156	0.00022331	-0.58774	-0.00029724	-0.14618	-7.3928E-05	505.73983064454615	57.384	0.40884	57.384	57.116	57.525	0					19	14	2	0	0	0	0.21137	1	13825	13825		12.532	1.7076	1	115480			306	9952	189	189	339	339					-0.03858770791055122
AFCNQEQQMQK	11	Unmodified	_AFCNQEQQMQK_					0	0	0		ENST00000360214.7_1_21:40195038-40195278:+|nuORF	ENST00000360214.7_1_21:40195038-40195278:+|nuORF	ENST00000360214.7_1_21:40195038-40195278:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7495422363281	3	452.200795	1353.58056	0.15521	7.0188E-05	2.3728	0.001073	2.528	0.0011432	452.20173377654515	24.194	0.37261	24.155	23.993	24.366	-0.038927					18	12	2	0	0	0	0.32909	1	3677	3677		10.899	1.6552	1	52010			307	9673	190	190	340	340					-0.08209197433734516
AFEDQREL	8	Unmodified	_AFEDQREL_					0	0	0		ENST00000231461.9_1_5:100238801-100238969:-|nuORF	ENST00000231461.9_1_5:100238801-100238969:-|nuORF	ENST00000231461.9_1_5:100238801-100238969:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.5930480957031	2	504.243264	1006.47197	0.44653	0.00022516	-1.1686	-0.00058923	-0.72202	-0.00036407	504.2426543201579	58.453	0.5535	58.453	58.159	58.712	0					29	18	2	0	0	0	0.34092	1	14249	14249		13.508	1.8676	1	405560			308	8863	191	191	341	341					-0.031002973501813358
AFEDQREL	8	Unmodified	_AFEDQREL_					0	0	0		ENST00000231461.9_1_5:100238801-100238969:-|nuORF	ENST00000231461.9_1_5:100238801-100238969:-|nuORF	ENST00000231461.9_1_5:100238801-100238969:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	504.243264	1006.47197	0.71126	0.00035865	-1.6907	-0.00085252	-0.97943	-0.00049387	504.24225870188315	58.454	0.52685	58.439	58.25	58.777	-0.014267	0.021488	-0.00041861	NaN	13.508	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	456070			309	8863	191	191							-0.031002973501813358
AFFLTRFAS	9	Unmodified	_AFFLTRFAS_					0	0	0		ENST00000373840.8_1_9:123943038-123943272:-|nuORF	ENST00000373840.8_1_9:123943038-123943272:-|nuORF	ENST00000373840.8_1_9:123943038-123943272:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.82177734375	2	530.284734	1058.55492	0.30027	0.00015923	-1.253	-0.00066443	-0.95269	-0.0005052	530.2842658084544	15.84	0.84042	15.776	15.306	16.146	-0.063801					42	28	2	0	0	0	0.25779	1	1225	1225		6.2058	0.47393	1	80848			310	9879	192	192	342	342					0.027980641684507646
AFFPLQTH	8	Unmodified	_AFFPLQTH_					0	0	0		ENST00000563693.1_1_16:31153020-31154169:-|nuORF;nc|ENSG00000178226|Q5K4E3-2|PRSS36;nc|ENSG00000178226|Q5K4E3-3|PRSS36;ENSG00000178226|ENST00000268281|PRSS36	ENST00000563693.1_1_16:31153020-31154169:-|nuORF	ENST00000563693.1_1_16:31153020-31154169:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.24053955078125	2	480.750527	959.486502	-0.06385	-3.0696E-05	0.24243	0.00011655	0.17858	8.5853E-05	480.7507710251603	15.448	0.66169	15.448	15.154	15.816	0					43	22	4	0	0	0	0.34408	1	1092	1092		0.6015	0	1	53280			311	7045	193	193	343	343					0.0051381958861611565
AFGGLDDL	8	Unmodified	_AFGGLDDL_					0	0	0			REV__ENSG00000176435|ENST00000342213|CLEC14A	REV__ENSG00000176435|ENST00000342213|CLEC14A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.1904296875	2	404.197793	806.381034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.51	1	30.51	30.01	31.01	0								0	0	0	0.35779	1	5592	5592		11.114	0.93107	1		+		312	17938	194	194	344	344					-0.029901413276661515
AFGQRKLR	8	Unmodified	_AFGQRKLR_					0	0	0			REV__ENST00000473934.5_1_14:75157808-75158761:-|nuORF	REV__ENST00000473934.5_1_14:75157808-75158761:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.29583740234375	2	488.295968	974.577383	0.016045	7.8346E-06	-0.18296	-8.9337E-05	-0.16691	-8.1502E-05	488.2957956849749	25.46	0.51769	25.404	25.186	25.704	-0.055929					37	17	3	0	0	0	0.45169	1	4104	4104		5.2307	5.2307	1	179820	+		313	21386	195	195	345	345					0.08907708356764488
AFHRPPYHLL	10	Unmodified	_AFHRPPYHLL_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000576972.5_1_16:67914666-67915321:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.920654296875	3	417.564614	1249.67201	-0.20238	-8.4507E-05	0.93375	0.0003899	0.73137	0.00030539	417.5646968659746	39.984	0.82366	39.984	39.51	40.334	0					68	29	3	0	0	0	0.20667	1	8503	8503		26.021	14.955	1	403390			314	589	196	196	346	346					0.057162221080716336
AFHRPPYHLL	10	Unmodified	_AFHRPPYHLL_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000576972.5_1_16:67914666-67915321:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.9207763671875	3	417.564614	1249.67201	0.23049	9.6245E-05	0.78698	0.00032862	1.0175	0.00042486	417.5646961728017	39.68	0.84366	39.773	39.47	40.313	0.09267					67	29	4	0	0	0	0.13991	1	8394	8394		51.415	36.577	1	457840			315	589	196	196	347	347					0.057162221080716336
AFHRPPYHLL	10	Unmodified	_AFHRPPYHLL_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000576972.5_1_16:67914666-67915321:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.92071533203125	3	417.564614	1249.67201	0.15828	6.609E-05	0.5962	0.00024895	0.75447	0.00031504	417.5646036891677	39.717	0.74893	39.816	39.481	40.23	0.099407					66	26	3	0	0	0	0.18324	1	8380	8380		43.982	29.144	1	559760			316	589	196	196	348	348					0.057162221080716336
AFIAFSNLL	9	Unmodified	_AFIAFSNLL_					0	0	0		ENSG00000132405|ENST00000409757|TBC1D14;nc|ENSG00000132405|Q9P2M4-2|TBC1D14	ENSG00000132405|ENST00000409757|TBC1D14	ENSG00000132405|ENST00000409757|TBC1D14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.3101501464844	2	498.28166	994.548768	0.48631	0.00024232	-1.2933	-0.00064444	-0.80701	-0.00040212	498.28107254570295	90.708	0.2337	90.709	90.563	90.797	0.0003891					26	18	2	0	0	0	0.25431	1	24068	24068		9.3831	0	1	89182			317	3630	197	197	349	349					0.051275459369549026
AFIEKHWTF	9	Unmodified	_AFIEKHWTF_					0	0	0		nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.80322265625	2	589.803291	1177.59203	0.50991	0.00030075	-0.018437	-1.0874E-05	0.49147	0.00028987	589.8031568269392	51.387	0.56261	51.387	51.139	51.702	0					35	20	2	0	0	0	0.015924	1	12019	12019		70.332	41.25	1	580000			318	4867	198	198	350	350					0.010337357142361725
AFIEKHWTF	9	Unmodified	_AFIEKHWTF_					0	0	0		nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8035888671875	2	589.803291	1177.59203	0.35977	0.00021219	0.079699	4.7007E-05	0.43946	0.0002592	589.8030487247695	51.38	0.40059	51.426	51.221	51.621	0.046574					33	14	3	0	0	0	0.0098873	1	12029	12029		79.596	50.515	1	606630			319	4867	198	198	351	351					0.010337357142361725
AFIEKHWTF	9	Unmodified	_AFIEKHWTF_					0	0	0		nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.80322265625	2	589.803291	1177.59203	0.38189	0.00022524	0.0046614	2.7493E-06	0.38655	0.00022799	589.803306761709	51.58	0.48206	51.59	51.321	51.803	0.0095634					33	17	2	0	0	0	0.0016712	1	12038	12038		114.2	82.933	1	776360			320	4867	198	198	352	352					0.010337357142361725
AFIKIKMAF	9	Oxidation (M)	_AFIKIKM(Oxidation (M))AF_		AFIKIKM(1)AF		AFIKIKM(55)AF	0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2860717773438	2	542.814813	1083.61507	0.39911	0.00021664	-0.25968	-0.00014096	0.13942	7.5681E-05	542.8145878493913	46.521	0.64166	46.521	46.35	46.992	0					40	22	3	0	0	0	0.065123	1	10497	10497		54.774	33.027	1	401350			321	5874	199	199	353	353		694			0.07661038507353624
AFIKIKMAF	9	Oxidation (M)	_AFIKIKM(Oxidation (M))AF_		AFIKIKM(1)AF		AFIKIKM(48)AF	0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2863159179688	2	542.814813	1083.61507	0.53056	0.000288	-0.79525	-0.00043168	-0.26469	-0.00014368	542.8142799336887	46.415	0.3255	46.467	46.229	46.554	0.05257					18	11	2	0	0	0	0.081926	1	10454	10454		48.346	19.859	1	354370			322	5874	199	199	354	354		694			0.07661038507353624
AFIKIKMAF	9	Oxidation (M)	_AFIKIKM(Oxidation (M))AF_		AFIKIKM(1)AF		AFIKIKM(48)AF	0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.285888671875	2	542.814813	1083.61507	0.73203	0.00039736	-0.047253	-2.565E-05	0.68478	0.00037171	542.8146726515556	46.668	0.37377	46.721	46.527	46.901	0.052574					23	13	2	0	0	0	0.11486	1	10514	10514		48.346	32.499	1	363540			323	5874	199	199	355	355		694			0.07661038507353624
AFIKIKMAF	9	Oxidation (M)	_AFIKIKM(Oxidation (M))AF_		AFIKIKM(1)AF		AFIKIKM(74)AF	0	0	1		ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2869262695312	2	542.814813	1083.61507	0.52629	0.00028568	-0.12975	-7.0429E-05	0.39654	0.00021525	542.8146452200859	46.727	0.73777	46.781	46.269	47.006	0.054371					42	25	2	0	0	0	0.037153	1	10584	10584		74.423	57.48	1	502940			324	5874	199	199	356	356		694			0.07661038507353624
AFIQKSDLF	9	Unmodified	_AFIQKSDLF_					0	0	0		nc|ENSG00000127081|Q5JVG2-2|ZNF484;ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484	nc|ENSG00000127081|Q5JVG2-2|ZNF484	nc|ENSG00000127081|Q5JVG2-2|ZNF484	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.3056030273438	2	534.78985	1067.56515	0.41469	0.00022177	-0.45138	-0.00024139	-0.036686	-1.9619E-05	534.7893859730178	55.527	0.42942	55.527	55.302	55.732	0					24	15	2	0	0	0	0.07944	1	13311	13311		41.956	14.327	1	737220			325	3304	200	200	357	357					0.034066271030496864
AFIQKSDLF	9	Unmodified	_AFIQKSDLF_					0	0	0		nc|ENSG00000127081|Q5JVG2-2|ZNF484;ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484	nc|ENSG00000127081|Q5JVG2-2|ZNF484	nc|ENSG00000127081|Q5JVG2-2|ZNF484	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.3058471679688	2	534.78985	1067.56515	0.52492	0.00028072	-0.3169	-0.00016948	0.20801	0.00011124	534.7893608822689	55.466	0.6095	55.537	55.245	55.854	0.070885					27	15	2	0	0	0	0.07944	1	13267	13267		41.956	9.6501	1	743210			326	3304	200	200	358	358					0.034066271030496864
AFIQKSDLF	9	Unmodified	_AFIQKSDLF_					0	0	0		nc|ENSG00000127081|Q5JVG2-2|ZNF484;ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484	nc|ENSG00000127081|Q5JVG2-2|ZNF484	nc|ENSG00000127081|Q5JVG2-2|ZNF484	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.3058471679688	2	534.78985	1067.56515	0.57317	0.00030653	-0.070904	-3.7919E-05	0.50227	0.00026861	534.7895146474044	55.643	0.45008	55.624	55.434	55.884	-0.019081					30	16	2	0	0	0	0.017549	2	13293	13293;13341		67.838	25.999	1	709220			327	3304	200	200	359;360	359					0.034066271030496864
AFISIIDDLSK	11	Unmodified	_AFISIIDDLSK_					0	0	0		nc|ENSG00000091181|Q01344-3|IL5RA;nc|ENSG00000091181|Q01344-2|IL5RA;nc|ENSG00000091181|Q01344-4|IL5RA;ENSG00000091181|ENST00000446632|IL5RA	nc|ENSG00000091181|Q01344-3|IL5RA	nc|ENSG00000091181|Q01344-3|IL5RA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.3563842773438	2	611.339904	1220.66525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.537	1	82.516	82.016	83.016	-0.020584								0	0	0	0.33831	1	21535	21535		10.8	2.0541	1				328	1400	201	201	361	361					0.06374819646180185
AFKELGETR	9	Unmodified	_AFKELGETR_					0	0	0			REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF	REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8062133789062	2	525.782556	1049.55056	0.18288	9.6156E-05	-0.027972	-1.4707E-05	0.15491	8.1449E-05	525.7822948826708	13.662	0.36643	13.662	13.427	13.794	0					31	12	3	0	0	0	0.2422	1	452	452		19.362	2.249	1	108370	+		329	18487	202	202	362	362					0.027765549548803392
AFKFFQRDHK	10	Unmodified	_AFKFFQRDHK_					0	0	0		nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000117569|Q9UKA9-2|PTBP2	nc|ENSG00000117569|Q9UKA9-2|PTBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7508239746094	3	441.903406	1322.68839	0.013808	6.1016E-06	-3.3675	-0.0014881	-3.3537	-0.001482	441.90173196551126	31.569	0.13419	31.569	31.476	31.61	0					5	4	2	0	0	0	0.31651	1	5901	5901		11.518	1.2026	1	130710			330	12674	203	203	363	363					0.03995303274177786
AFKNHLLLS	9	Unmodified	_AFKNHLLLS_					0	0	0			REV__ENSG00000145041|ENST00000684031|DCAF1	REV__ENSG00000145041|ENST00000684031|DCAF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.8164672851562	2	521.805834	1041.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.384	1	45.449	44.949	45.949	0.065048								0	0	0	0.20238	1	10129	10129		21.747	1.293	1		+		331	16275	204	204	364	364					0.0779803957684635
AFKRRFHL	8	Unmodified	_AFKRRFHL_					0	0	0		ENSG00000153896|ENST00000329285|ZNF599	ENSG00000153896|ENST00000329285|ZNF599	ENSG00000153896|ENST00000329285|ZNF599	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2964477539062	2	537.81961	1073.62467	0.35781	0.00019244	0.058065	3.1229E-05	0.41587	0.00022366	537.8196441707062	31.103	0.31339	31.103	30.918	31.231	0					15	10	2	0	0	0	0.34297	1	5741	5741		2.8892	0	1	81553			332	5090	205	205	365	365					0.0907998762772877
AFLELLSEF	9	Unmodified	_AFLELLSEF_					0	0	0		nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3;nc|ENSG00000292277|Q9UJ98-3|STAG3	nc|ENSG00000292277|Q9UJ98|STAG3	nc|ENSG00000292277|Q9UJ98|STAG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2923583984375	2	534.784233	1067.55391	0.3857	0.00020627	-0.34308	-0.00018347	0.042619	2.2792E-05	535.2853003758522	89.623	0.15506	89.714	89.692	89.847	0.090569					16	12	2	0	0	0	0.25526	1	23719	23719		7.9102	0.62092	1	143250			333	849	206	206	366	366					0.022838050089148965
AFLKVSSVF	9	Unmodified	_AFLKVSSVF_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2898864746094	2	499.289485	996.564418	0.39832	0.00019888	-0.080086	-3.9986E-05	0.31824	0.00015889	499.2895555535789	62.837	0.83392	62.837	62.58	63.413	0					83	30	4	0	0	0	0.0063009	1	15538	15538		99.755	57.916	1	1228400			334	1589	207	207	367	367					0.06599832454003263
AFLKVSSVF	9	Unmodified	_AFLKVSSVF_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.28973388671875	2	499.289485	996.564418	0.43709	0.00021823	0.014834	7.4064E-06	0.45192	0.00022564	499.2895257410944	62.688	0.84482	62.785	62.521	63.366	0.096745					84	30	4	0	0	0	0.0098873	2	15447	15447;15496		79.596	45.195	1	1181600			335	1589	207	207	368;369	368					0.06599832454003263
AFLKVSSVF	9	Unmodified	_AFLKVSSVF_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2897033691406	2	499.289485	996.564418	0.3114	0.00015548	0.06113	3.0521E-05	0.37253	0.000186	499.28959322333543	62.806	1.1062	62.797	62.191	63.297	-0.0085526					100	40	4	0	0	0	0.0046246	2	15482	15482;15537		89.401	47.561	1	1176100			336	1589	207	207	370;371	370					0.06599832454003263
AFLLEALQS	9	Unmodified	_AFLLEALQS_					0	0	0			REV__nc|ENSG00000135637|Q17RM4-3|CCDC142	REV__nc|ENSG00000135637|Q17RM4-3|CCDC142	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7840270996094	2	496.276575	990.538597	0.61157	0.00030351	0.56832	0.00028204	1.1799	0.00058555	496.2763751408744	85.171	1.7245	85.171	84.527	86.251	0					273	65	7	0	0	0	0.23775	1	22276	22276		18.135	5.6034	1	7209900	+		337	15754	208	208	372	372					0.04294938211717181
AFLNDVFIKL	10	Unmodified	_AFLNDVFIKL_					0	0	0			REV__nc|ENSG00000163913|Q9HBG6-8|IFT122;REV__ENST00000480931.1_1_3:128580492-128584319:-|nuORF	REV__nc|ENSG00000163913|Q9HBG6-8|IFT122	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.3421020507812	2	590.342249	1178.66995	0.4511	0.0002663	-0.20392	-0.00012038	0.24718	0.00014592	590.3420361195138	51.166	0.52195	51.213	50.957	51.479	0.046574					43	19	3	0	0	0	0.27059	1	11938	11938		24.021	1.2843	1	673860	+		338	17103;21481	209	209	373	373					0.08775748579614628
AFLNDVFIKL	10	Unmodified	_AFLNDVFIKL_					0	0	0			REV__nc|ENSG00000163913|Q9HBG6-8|IFT122;REV__ENST00000480931.1_1_3:128580492-128584319:-|nuORF	REV__nc|ENSG00000163913|Q9HBG6-8|IFT122	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	590.342249	1178.66995	0.49917	0.00029468	-0.23305	-0.00013758	0.26612	0.0001571	590.3419888768641	51.26	0.51858	51.27	51.042	51.561	0.0095634	0.04355	4.4398E-05	NaN	24.021	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	665310	+		339	17103;21481	209	209							0.08775748579614628
AFLVLHSRF	9	Unmodified	_AFLVLHSRF_					0	0	0		ENST00000473371.1_1_13:39612599-39612881:+|nuORF;nc|ENSG00000188811|Q5JS37-2|NHLRC3;ENSG00000188811|ENST00000379600|NHLRC3	ENST00000473371.1_1_13:39612599-39612881:+|nuORF	ENST00000473371.1_1_13:39612599-39612881:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7484130859375	2	545.313826	1088.6131	0.82373	0.00044919	-0.62393	-0.00034024	0.19979	0.00010895	545.3136259477142	50.467	0.46314	50.467	50.191	50.654	0					18	16	2	0	0	0	0.22061	1	11747	11747		24.021	7.0783	1	77694			340	7777	210	210	374	374					0.07233745813755377
AFLVLHSRF	9	Unmodified	_AFLVLHSRF_					0	0	0		ENST00000473371.1_1_13:39612599-39612881:+|nuORF;nc|ENSG00000188811|Q5JS37-2|NHLRC3;ENSG00000188811|ENST00000379600|NHLRC3	ENST00000473371.1_1_13:39612599-39612881:+|nuORF	ENST00000473371.1_1_13:39612599-39612881:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	545.313826	1088.6131	1.2892	0.00070304	-0.89237	-0.00048662	0.39687	0.00021642	545.313147684262	50.499	0.34936	50.52	50.309	50.658	0.020691	0.026566	-0.00018522	NaN	24.021	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162600			341	7777	210	210							0.07233745813755377
AFMKGVFTF	9	Oxidation (M)	_AFM(Oxidation (M))KGVFTF_		AFM(1)KGVFTF		AFM(130)KGVFTF	0	0	1		ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2824096679688	2	532.267696	1062.52084	0.60687	0.00032302	0.31652	0.00016847	0.92339	0.00049149	532.2679651398488	58.455	1.1947	58.455	58.159	59.353	0					98	41	4	0	0	0	0.00014042	3	14139	14139;14158;14215		134.3	105.21	1	3725400			342	8567	211	211	375;376;377	375		917			-0.007921003148112504
AFMKGVFTF	9	Oxidation (M)	_AFM(Oxidation (M))KGVFTF_		AFM(1)KGVFTF		AFM(140)KGVFTF	0	0	1		ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2823486328125	2	532.267696	1062.52084	0.39909	0.00021242	0.72549	0.00038616	1.1246	0.00059858	532.2681755210639	58.275	1.2629	58.361	58.053	59.316	0.085617					107	44	4	0	0	0	9.2305E-05	4	14089	14045;14089;14095;14138		142.08	109.29	1	3742600			343	8567	211	211	378;379;380;381	379		917			-0.007921003148112504
AFMKGVFTF	9	Oxidation (M)	_AFM(Oxidation (M))KGVFTF_		AFM(1)KGVFTF		AFM(130)KGVFTF	0	0	1		ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2825317382812	2	532.267696	1062.52084	0.80277	0.00042729	-0.0041608	-2.2147E-06	0.7986	0.00042507	532.2677799384008	58.512	1.0586	58.498	58.25	59.309	-0.014267					89	37	4	0	0	0	0.00014042	3	14169	14169;14182;14226		134.3	105.21	1	4419400			344	8567	211	211	382;383;384	382		917			-0.007921003148112504
AFNEFADNFN	10	Unmodified	_AFNEFADNFN_					0	0	0			REV__nc|ENSG00000080561|Q9UJV3-2|MID2	REV__nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2799072265625	2	594.751453	1187.48835	0.48112	0.00028615	1.075	0.00063933	1.5561	0.00092548	594.7522665747114	68.366	0.45131	68.347	68.121	68.572	-0.019157					28	15	2	0	0	0	0.31889	1	17166	17166		6.2058	0	1	245120	+		345	13889	212	212	385	385					-0.09789216184094585
AFNPLFGCSI	10	Unmodified	_AFNPLFGCSI_					0	0	0		PKD1L3|p.L1611P|1|0.29|ENSG00000277481|chr16:71933514-71933514|A/G|missense_variant	PKD1L3|p.L1611P|1|0.29|ENSG00000277481|chr16:71933514-71933514|A/G|missense_variant	PKD1L3|p.L1611P|1|0.29|ENSG00000277481|chr16:71933514-71933514|A/G|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7717895507812	2	534.762778	1067.511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.183	1	43.267	42.767	43.767	0.083996								0	0	0	0.30188	1	9453	9453		27.629	0	1				346	13047	213	213	386	386					-0.02005288320174259
AFPEKIPLF	9	Unmodified	_AFPEKIPLF_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;AFF1|p.V253Sfs*58|1|0.35|ENSG00000172493|chr4:87047309-87047309|G/-|frameshift_variant	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.305419921875	2	531.305136	1060.59572	0.47973	0.00025488	0.22137	0.00011761	0.70109	0.00037249	531.3051149631676	70.079	1.0667	70.079	69.59	70.657	0					142	38	5	0	0	0	0.20626	1	17790	17790		22.736	7.898	1	792940			347	6639	214	214	387	387					0.06784405488065204
AFPEKIPLF	9	Unmodified	_AFPEKIPLF_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;AFF1|p.V253Sfs*58|1|0.35|ENSG00000172493|chr4:87047309-87047309|G/-|frameshift_variant	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3057861328125	2	531.305136	1060.59572	0.33472	0.00017784	0.111	5.8976E-05	0.44572	0.00023681	531.305210685893	70.026	1.0326	70.092	69.717	70.749	0.066048					140	36	6	0	0	0	0.20626	1	17789	17789		22.736	3.4793	1	842860			348	6639	214	214	388	388					0.06784405488065204
AFPEKIPLF	9	Unmodified	_AFPEKIPLF_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;AFF1|p.V253Sfs*58|1|0.35|ENSG00000172493|chr4:87047309-87047309|G/-|frameshift_variant	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3053588867188	2	531.305136	1060.59572	0.48727	0.00025889	0.41238	0.0002191	0.89964	0.00047799	531.3050877316938	70.168	1.1063	70.146	69.701	70.807	-0.022087					115	39	4	0	0	0	0.11201	2	17755	17755;17807		36.506	11.107	1	797280			349	6639	214	214	389;390	389					0.06784405488065204
AFPEKIPLF	9	Unmodified	_AFPEKIPLF_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;AFF1|p.V253Sfs*58|1|0.35|ENSG00000172493|chr4:87047309-87047309|G/-|frameshift_variant	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	531.305136	1060.59572	0.33472	0.00017784	0.111	5.8976E-05	0.44572	0.00023681	531.305210685893	70.026	1.0326	70.092	69.717	70.749	0.066048	-0.013367	-0.00016317	NaN	36.506	140	36	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	842860			350	6639	214	214							0.06784405488065204
AFPPSSPLF	9	Unmodified	_AFPPSSPLF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-3|AFF4;ENST00000465484.1_1_5:132262803-132272881:-|nuORF;ENST00000491831.5_1_5:132239864-132272881:-|nuORF;nc|ENSG00000072364|Q9UHB7-2|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.75286865234375	2	481.752736	961.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.263	1	73.263	72.763	73.763	0								0	0	0	0.038884	1	18716	18716		64.236	39.562	1				351	979	215	215	391	391					0.008632840115183171
AFPPSSPLF	9	Unmodified	_AFPPSSPLF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-3|AFF4;ENST00000465484.1_1_5:132262803-132272881:-|nuORF;ENST00000491831.5_1_5:132239864-132272881:-|nuORF;nc|ENSG00000072364|Q9UHB7-2|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7537536621094	2	481.752736	961.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.499	1	73.499	72.999	73.999	0								0	0	0	0.061409	1	18788	18788		57.471	27.247	1				352	979	215	215	392	392					0.008632840115183171
AFPPSSPLF	9	Unmodified	_AFPPSSPLF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-3|AFF4;ENST00000465484.1_1_5:132262803-132272881:-|nuORF;ENST00000491831.5_1_5:132239864-132272881:-|nuORF;nc|ENSG00000072364|Q9UHB7-2|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7539367675781	2	481.752736	961.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.982	1	73.982	73.482	74.482	0								0	0	0	0.091794	1	18936	18936		48.346	23.672	1				353	979	215	215	393	393					0.008632840115183171
AFPPSSPLF	9	Unmodified	_AFPPSSPLF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-3|AFF4;ENST00000465484.1_1_5:132262803-132272881:-|nuORF;ENST00000491831.5_1_5:132239864-132272881:-|nuORF;nc|ENSG00000072364|Q9UHB7-2|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.753662109375	2	481.752736	961.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.165	1	74.165	73.665	74.665	0								0	0	0	0.14428	1	18991	18991		36.044	5.8194	1				354	979	215	215	394	394					0.008632840115183171
AFPPSSPLF	9	Unmodified	_AFPPSSPLF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-3|AFF4;ENST00000465484.1_1_5:132262803-132272881:-|nuORF;ENST00000491831.5_1_5:132239864-132272881:-|nuORF;nc|ENSG00000072364|Q9UHB7-2|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7535705566406	2	481.752736	961.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.416	1	74.416	73.916	74.916	0								0	0	0	0.17683	1	19068	19068		28.487	10.352	1				355	979	215	215	395	395					0.008632840115183171
AFPPSSPLF	9	Unmodified	_AFPPSSPLF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-3|AFF4;ENST00000465484.1_1_5:132262803-132272881:-|nuORF;ENST00000491831.5_1_5:132239864-132272881:-|nuORF;nc|ENSG00000072364|Q9UHB7-2|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.75299072265625	2	481.752736	961.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.267	1	73.321	72.821	73.821	0.053833								0	0	0	0.048469	1	18709	18709		61.357	31.133	1				356	979	215	215	396	396					0.008632840115183171
AFPPSSPLF	9	Unmodified	_AFPPSSPLF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-3|AFF4;ENST00000465484.1_1_5:132262803-132272881:-|nuORF;ENST00000491831.5_1_5:132239864-132272881:-|nuORF;nc|ENSG00000072364|Q9UHB7-2|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7538757324219	2	481.752736	961.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.476	1	73.53	73.03	74.03	0.053833								0	0	0	0.091794	1	18773	18773		48.346	18.121	1				357	979	215	215	397	397					0.008632840115183171
AFPPSSPLF	9	Unmodified	_AFPPSSPLF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-3|AFF4;ENST00000465484.1_1_5:132262803-132272881:-|nuORF;ENST00000491831.5_1_5:132239864-132272881:-|nuORF;nc|ENSG00000072364|Q9UHB7-2|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7538757324219	2	481.752736	961.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.042	1	74.094	73.594	74.594	0.052361								0	0	0	0.14428	1	18946	18946		36.044	16.605	1				358	979	215	215	398	398					0.008632840115183171
AFPPSSPLF	9	Unmodified	_AFPPSSPLF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-3|AFF4;ENST00000465484.1_1_5:132262803-132272881:-|nuORF;ENST00000491831.5_1_5:132239864-132272881:-|nuORF;nc|ENSG00000072364|Q9UHB7-2|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7534484863281	2	481.752736	961.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.037	1	74.006	73.506	74.506	-0.030655								0	0	0	0.091794	1	18938	18938		48.346	22.005	1				359	979	215	215	399	399					0.008632840115183171
AFPWCLII	8	Unmodified	_AFPWCLII_					0	0	0		HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|56|3|sense	HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|56|3|sense	HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|56|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7533264160156	2	481.762049	961.509546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.03	1	73.03	72.53	73.53	0								0	0	0	0.35779	1	18646	18646		11.114	0	1				360	12401	216	216	400	400					0.02725122381730216
AFQKIVVLF	9	Unmodified	_AFQKIVVLF_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000136261|ENST00000258761|BZW2	ENSG00000082153|ENST00000409600|BZW1;ENSG00000136261|ENST00000258761|BZW2	ENSG00000082153|ENST00000409600|BZW1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.29541015625	2	532.828778	1063.643	0.37025	0.00019728	-0.51911	-0.0002766	-0.14887	-7.932E-05	532.8284403766955	69.799	0.46164	69.799	69.537	69.999	0					26	16	2	0	0	0	0.17611	1	17643	17643		26.884	26.884	1	163980			361	1193;3962	217	217	401	401					0.1137268475908968
AFRARKIK	8	Unmodified	_AFRARKIK_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.79278564453125	2	495.321986	988.629418	0.032226	1.5962E-05	-1.4316	-0.0007091	-1.3994	-0.00069314	495.3212773816333	13.853	0.27013	13.748	13.633	13.903	-0.10466					13	9	2	0	0	0	0.34437	1	588	588		0.69038	0	1	28804	+		362	15644	218	218	402	402					0.13464871770497666
AFRARKIK	8	Unmodified	_AFRARKIK_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	495.321986	988.629418	0.087246	4.3215E-05	-1.7014	-0.00084274	-1.6141	-0.00079952	495.3210838836824	13.83	0.16193	13.83	13.74	13.902	0	0.028742	-0.0001627	NaN	2.3027	14	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40496	+		363	15644	218	218							0.13464871770497666
AFRARKIK	8	Unmodified	_AFRARKIK_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	495.321986	988.629418	0.0025462	1.2612E-06	-1.2654	-0.00062678	-1.2629	-0.00062552	495.3213702264319	13.892	0.23307	13.826	13.716	13.949	-0.066068	0.024818	0.00026921	NaN	2.3027	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37402	+		364	15644	218	218							0.13464871770497666
AFRRGFHM	8	Unmodified	_AFRRGFHM_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.26055908203125	2	511.261071	1020.50759	-0.027677	-1.415E-05	-0.88508	-0.00045251	-0.91276	-0.00046666	511.2605550507375	12.547	0.29011	12.45	12.356	12.646	-0.096606					20	9	3	0	0	0	0.46461	1	171	171		0.79363	0.10326	1	93356			365	2544	219	219	403	403					-0.0018449358350380862
AFRRGFHM	8	Unmodified	_AFRRGFHM_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	511.261071	1020.50759	-0.031996	-1.6358E-05	-1.3733	-0.00070212	-1.4053	-0.00071847	511.260409153656	12.541	0.23653	12.541	12.433	12.669	0	0.042407	-0.00042069	NaN	0.79363	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95136			366	2544	219	219							-0.0018449358350380862
AFRRQVRE	8	Unmodified	_AFRRQVRE_					0	0	0			REV__ENSG00000124194|ENST00000342560|GDAP1L1	REV__ENSG00000124194|ENST00000342560|GDAP1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.8272705078125	2	531.301781	1060.58901	0.052097	2.7679E-05	2.6311	0.0013979	2.6832	0.0014256	531.3031452491639	12.831	0.30279	12.763	12.548	12.851	-0.067496					11	7	2	0	0	0	0.34367	1	223	223		4.3292	0.38484	1	34545	+		367	15216	220	220	404	404					0.06113905380084361
AFRYLRRQR	9	Unmodified	_AFRYLRRQR_					0	0	0		nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3	nc|ENSG00000125675|P42263|GRIA3	nc|ENSG00000125675|P42263|GRIA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3685913085938	2	633.37053	1264.72651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.86	1	105.86	105.36	106.36	0								0	0	0	0.264	1	28013	28013		1.8442	0.36234	1				368	12685	221	221	405	405					0.10473233979496399
AFRYLRRQR	9	Unmodified	_AFRYLRRQR_					0	0	0		nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3	nc|ENSG00000125675|P42263|GRIA3	nc|ENSG00000125675|P42263|GRIA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3690185546875	2	633.37053	1264.72651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.995	1	99.046	98.546	99.546	0.050888								0	0	0	0.264	1	26497	26497		1.8442	0.19162	1				369	12685	221	221	406	406					0.10473233979496399
AFSFWPGQ	8	Unmodified	_AFSFWPGQ_					0	0	0		ENST00000423995.5_1_1:32706007-32706379:-|nuORF;ENST00000441044.5_1_1:32706007-32706920:-|nuORF	ENST00000423995.5_1_1:32706007-32706379:-|nuORF	ENST00000423995.5_1_1:32706007-32706379:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.7606506347656	2	470.221603	938.428653	0.38408	0.0001806	-1.1298	-0.00053127	-0.74575	-0.00035067	470.221388452342	65.8	0.58694	65.788	65.53	66.117	-0.011337					37	20	3	0	0	0	0.34046	1	16514	16514		9.3474	3.587	1	315370			370	10391	222	222	407	407					-0.043024423368024145
AFSPVLLQF	9	Unmodified	_AFSPVLLQF_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2896728515625	2	511.289485	1020.56442	0.33164	0.00016957	-1.1374	-0.00058152	-0.80571	-0.00041195	511.28939559290933	88.107	2.5639	88.196	87.627	90.191	0.089195					432	148	6	0	0	0	0.014888	2	23229	23189;23229		71.922	16.552	1	4964000			371	3643	223	223	408;409	409					0.05495832454005267
AFSPVLLQF	9	Unmodified	_AFSPVLLQF_					0	0	0		ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	ENSG00000132510|ENST00000448097|KDM6B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.28973388671875	2	511.289485	1020.56442	0.31607	0.0001616	-0.98484	-0.00050354	-0.66877	-0.00034194	511.28943265081284	88.222	2.0685	88.219	87.694	89.762	-0.0028381					381	109	6	0	0	0	0.014888	1	23235	23235		71.922	1.2067	1	5633300			372	3643	223	223	410	410					0.05495832454005267
AFSYLHYSI	9	Unmodified	_AFSYLHYSI_					0	0	0			REV__ENST00000376344.7_1_9:86554288-86554393:-|nuORF	REV__ENST00000376344.7_1_9:86554288-86554393:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2538452148438	2	550.7742	1099.53385	0.54852	0.00030211	-0.54731	-0.00030145	0.0012111	6.6704E-07	550.7738750451044	46.444	0.62485	46.496	46.276	46.901	0.052574					31	22	2	0	0	0	0.2451	1	10556	10556		10.824	0	1	476100	+		373	20487	224	224	411	411					-0.011939459310497114
AFSYLTRN	8	Unmodified	_AFSYLTRN_					0	0	0		ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8004455566406	2	486.250892	970.48723	0.14384	6.9943E-05	0.86412	0.00042018	1.008	0.00049012	486.25144291848346	95.51	0.71764	95.587	95.418	96.136	0.077408					91	58	2	0	0	0	0.34337	1	25604	25604		5.2307	0.47466	1	177000			374	7061	225	225	412	412					0.0008061423766321241
AFTPFSVMI	9	Oxidation (M)	_AFTPFSVM(Oxidation (M))I_		AFTPFSVM(1)I		AFTPFSVM(55)I	0	0	1		ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8472290039062	2	514.759704	1027.50485	0.29598	0.00015236	0.1787	9.1988E-05	0.47468	0.00024435	514.7597094591425	81.526	0.44038	81.526	81.28	81.72	0					30	19	2	0	0	0	0.090484	1	21259	21259		54.774	12.679	1	107880			375	876	226	226	413	413		112			-0.007798065516908537
AFTPFSVMI	9	Oxidation (M)	_AFTPFSVM(Oxidation (M))I_		AFTPFSVM(1)I		AFTPFSVM(61)I	0	0	1		ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.8472290039062	2	514.759704	1027.50485	0.20419	0.00010511	-0.093395	-4.8076E-05	0.11079	5.7031E-05	514.7595827592133	81.57	0.36401	81.546	81.351	81.715	-0.02404					25	16	2	0	0	0	0.047851	1	21235	21235		61.357	27.255	1	207920			376	876	226	226	414	414		112			-0.007798065516908537
AFTVDSPV	8	Unmodified	_AFTVDSPV_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000489177.1_1_2:112630836-112638411:-|nuORF;ENST00000426186.1_3_2:87098444-87121919:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1;ENST00000426186.1_3_2:87098444-87121919:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.9215087890625	2	418.213443	834.412334	-0.0033419	-1.3976E-06	-0.1391	-5.8176E-05	-0.14245	-5.9573E-05	418.2132928626771	39.373	0.54985	39.466	39.17	39.72	0.09267					33	19	3	0	0	0	0.33995	1	8342	8342		15.768	1.1865	1	223580			377	5060;10417	227	227	415	415					-0.011495682935674267
AFTVIRKKY	9	Unmodified	_AFTVIRKKY_					0	0	0		ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	ENSG00000016490|ENST00000394711|CLCA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3407592773438	2	563.342584	1124.67061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.36	1	116.33	115.83	116.83	-0.022781								0	0	0	0.26334	1	30144	30144		2.0598	0	1				378	486	228	228	416	416					0.11326588019323935
AFVGSPAYLIK	11	Unmodified	_AFVGSPAYLIK_					0	0	0		ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.744873046875	2	583.334424	1164.6543	0.23665	0.00013805	0.028862	1.6836E-05	0.26551	0.00015488	583.334307675716	64.908	0.51534	64.897	64.632	65.148	-0.011337					30	18	2	0	0	0	0.32667	1	16072	16072		13.042	1.4022	1	354080			379	5575	229	229	417	417					0.07855462062548213
AFVGSPAYLIK	11	Unmodified	_AFVGSPAYLIK_					0	0	0		ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	583.334424	1164.6543	0.29911	0.00017448	0.11045	6.4431E-05	0.40956	0.00023891	583.3343981678977	64.887	0.48092	64.887	64.647	65.128	0	0.013592	0.00019953	NaN	13.042	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354180			380	5575	229	229							0.07855462062548213
AFVGSPAYLIK	11	Unmodified	_AFVGSPAYLIK_					0	0	0		ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	583.334424	1164.6543	0.36737	0.0002143	-0.28168	-0.00016431	0.08569	4.9986E-05	583.3341319985025	64.743	0.58766	64.836	64.633	65.22	0.09288	-0.037008	-0.00025795	NaN	13.042	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317820			381	5575	229	229							0.07855462062548213
AFVGYMNVGVF	11	Unmodified	_AFVGYMNVGVF_					0	0	0			REV__ADCY1|p.V231A|1|0.04|ENSG00000164742|chr7:45592811-45592811|T/C|missense_variant	REV__ADCY1|p.V231A|1|0.04|ENSG00000164742|chr7:45592811-45592811|T/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.7989501953125	2	602.296985	1202.57942	0.60767	0.000366	1.3366	0.00080502	1.9442	0.001171	602.2983107795828	82.648	1.1535	82.648	81.797	82.95	0					69	42	3	0	0	0	0.44192	1	21621	21621		5.7319	1.5423	1	158250	+		382	13079	230	230	418	418					-0.013770437403309188
AFVPLSLLY	9	Unmodified	_AFVPLSLLY_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2806396484375	2	511.799686	1021.58482	0.42482	0.00021743	1.3331	0.00068227	1.7579	0.0008997	511.8004179271177	63.73	0.3195	63.721	63.592	63.911	-0.0085526					14	10	2	0	0	0	0.24542	1	15779	15779		9.3474	0	1	82900	+		383	18580	231	231	419	419					0.07489003113812487
AFYLRAMDV	9	Unmodified	_AFYLRAMDV_					0	0	0			REV__nc|ENSG00000099308|O60307|MAST3	REV__nc|ENSG00000099308|O60307|MAST3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2688598632812	2	543.276052	1084.53755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.976	1	88.975	88.475	89.475	-0.00080872								0	0	0	0.22065	1	23514	23514		15.847	1.2655	1		+		384	14128	232	232	420	420					-0.0013359942884108023
AFYPLLIRFV	10	Unmodified	_AFYPLLIRFV_					0	0	0		RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.869384765625	2	619.868434	1237.72232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.784	1	94.784	94.284	95.284	0								0	0	0	0.38126	1	25290	25290		1.6526	0	1				385	8096	233	233	421	421					0.11296331713219843
AFYPLLIRFV	10	Unmodified	_AFYPLLIRFV_					0	0	0		RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8695678710938	2	619.868434	1237.72232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.838	1	98.831	98.331	99.331	-0.006897								0	0	0	0.37581	1	26483	26483		3.9444	0.3479	1				386	8096	233	233	422	422					0.11296331713219843
AFYPLLIRFV	10	Unmodified	_AFYPLLIRFV_					0	0	0		RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8690185546875	2	619.868434	1237.72232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.46	1	102.46	101.96	102.96	-0.0033646								0	0	0	0.37581	1	27292	27292		3.9444	0.66309	1				387	8096	233	233	423	423					0.11296331713219843
AGAYILTRF	9	Unmodified	_AGAYILTRF_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.28515625	2	506.284734	1010.55492	0.79502	0.00040251	-0.005031	-2.5471E-06	0.78999	0.00039996	506.2846395148287	56.309	0.9161	56.309	56.021	56.937	0					81	33	4	0	0	0	0.0079761	2	13478	13478;13525		82.529	40.69	1	4290600			388	1891	234	234	424;425	424					0.05006064168458124
AGAYILTRF	9	Unmodified	_AGAYILTRF_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2850341796875	2	506.284734	1010.55492	0.83347	0.00042197	-0.060188	-3.0473E-05	0.77328	0.0003915	506.2846089674655	56.209	0.67611	56.288	56.028	56.704	0.078671					61	24	4	0	0	0	0.0079761	3	13453	13453;13503;13556		82.529	32.596	1	4293600			389	1891	234	234	426;427;428	426					0.05006064168458124
AGAYILTRF	9	Unmodified	_AGAYILTRF_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2850341796875	2	506.284734	1010.55492	0.98702	0.00049971	0.066036	3.3433E-05	1.0531	0.00053314	506.28467916870807	56.442	0.70566	56.423	56.187	56.892	-0.019077					66	25	4	0	0	0	0.0054984	3	13561	13508;13561;13606		86.332	36.399	1	4534900			390	1891	234	234	429;430;431	430					0.05006064168458124
AGDPVILYV	9	Unmodified	_AGDPVILYV_					0	0	0		ENSG00000100926|ENST00000261789|TM9SF1;nc|ENSG00000100926|O15321-2|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.29095458984375	2	473.765843	945.517133	0.17388	8.2377E-05	1.1852	0.00056151	1.3591	0.00064388	473.76585481807393	71.604	0.47498	71.604	71.462	71.937	0					28	16	2	0	0	0	0.1659	1	18217	18217		36.044	1.9418	1	333580			391	1646	235	235	432	432					0.04219553183008884
AGFDATNILNK	11	Unmodified	_AGFDATNILNK_					0	0	0		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3079833984375	2	582.306395	1162.59824	0.47313	0.00027551	1.0011	0.00058293	1.4742	0.00085844	582.3073122175587	51.296	0.29983	51.296	51.055	51.354	0					21	10	3	0	0	0	8.1577E-13	1	11964	11964		168.9	72.791	1	382120			392	3887	236	236	433	433					0.023442091550805344
AGFDATNILNK	11	Unmodified	_AGFDATNILNK_					0	0	0		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-2|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3506469726562	2	582.306395	1162.59824	0.34292	0.00019968	0.17899	0.00010423	0.52191	0.00030391	582.3073302694829	51.276	0.30912	51.322	51.092	51.401	0.046574					25	11	3	0	0	0	9.0397E-06	1	11933	11933		128.57	56.651	1	334870			393	3887	236	236	434	434					0.023442091550805344
AGHASFTIEF	10	Unmodified	_AGHASFTIEF_					0	0	0		nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;nc|ENSG00000143702|Q5SW79-2|CEP170;ENST00000502249.6_1_4:119401524-119435218:+|nuORF	nc|ENSG00000143702|Q5SW79-3|CEP170	nc|ENSG00000143702|Q5SW79-3|CEP170	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8319091796875	2	540.261456	1078.50836	0.67939	0.00036705	1.0991	0.00059382	1.7785	0.00096087	540.2620036893364	82.876	0.22987	82.856	82.694	82.924	-0.020584					11	8	2	0	0	0	0.31358	1	21593	21593		13.906	2.2658	1	116120			394	4541	237	237	435	435					-0.027754204534630844
AGHHAQPLALQ	11	Unmodified	_AGHHAQPLALQ_					0	0	0		nc|ENSG00000103995|O94986-3|CEP152;ENSG00000103995|ENST00000380950|CEP152;nc|ENSG00000103995|O94986-1|CEP152;nc|ENSG00000103995|O94986-2|CEP152	nc|ENSG00000103995|O94986-3|CEP152	nc|ENSG00000103995|O94986-3|CEP152	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.8046264648438	2	571.806897	1141.59924	0.17826	0.00010193	-0.85826	-0.00049076	-0.68	-0.00038883	571.8058844058986	18.968	0.73038	18.851	18.501	19.232	-0.11739					60	25	4	0	0	0	0.44828	1	2159	2159		4.897	0.70751	1	67666			395	1860	238	238	436	436					0.034104683146551906
AGHYFIIL	8	Unmodified	_AGHYFIIL_					0	0	0			REV__nc|ENSG00000167904|Q96MH6-2|TMEM68	REV__nc|ENSG00000167904|Q96MH6-2|TMEM68	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.26251220703125	2	467.263271	932.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.15	1	114.13	113.63	114.63	-0.019096								0	0	0	0.37595	1	29652	29652		2.8892	0.31174	1		+		396	17420	239	239	437	437					0.04303294111036848
AGIASSSIAAK	11	Unmodified	_AGIASSSIAAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2772216796875	2	488.277106	974.53966	0.16138	7.8799E-05	0.11109	5.4242E-05	0.27247	0.00013304	488.27712346423266	26.342	0.65091	26.342	26.078	26.729	0					43	22	3	0	0	0	0.00099561	1	4311	4311		96.936	63.491	1	314190			397	6014	240	240	438	438					0.05137152580618931
AGIASSSIAAK	11	Unmodified	_AGIASSSIAAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.27703857421875	2	488.277106	974.53966	0.16132	7.8771E-05	0.22474	0.00010974	0.38607	0.00018851	488.27712770547873	26.304	0.59565	26.265	26.037	26.632	-0.038671					42	20	3	0	0	0	2.4351E-05	2	4317	4317;4369		110.79	67.02	1	309060			398	6014	240	240	439;440	439					0.05137152580618931
AGIASSSIAAK	11	Unmodified	_AGIASSSIAAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2773742675781	2	488.277106	974.53966	0.36707	0.00017923	0.014578	7.1182E-06	0.38164	0.00018635	488.2770643639722	26.352	0.53658	26.329	26.133	26.67	-0.022238					39	18	3	0	0	0	0.0042142	1	4317	4317		81.915	45.409	1	315830			399	6014	240	240	441	441					0.05137152580618931
AGINTHSN	8	Unmodified	_AGINTHSN_					0	0	0		nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000131503|Q8IWZ3-5|ANKHD1;nc|ENSG00000131503|Q8IWZ3-3|ANKHD1;nc|ENSG00000131503|Q8IWZ3-2|ANKHD1;nc|ENSG00000132466|O75179-5|ANKRD17;ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	nc|ENSG00000132466|O75179-3|ANKRD17;ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.8841857910156	2	407.196116	812.37768	0.18603	7.5751E-05	-0.76532	-0.00031164	-0.57929	-0.00023589	407.1947813679362	20.826	0.22383	20.773	20.723	20.947	-0.05291					11	7	2	0	0	0	0.34218	1	2654	2654		5.2307	0	1	29706			400	3572;3637	241	241	442	442					-0.03601391381664598
AGISFIIKR	9	Unmodified	_AGISFIIKR_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7926940917969	2	502.816202	1003.61785	0.29504	0.00014835	-0.22481	-0.00011304	0.070231	3.5313E-05	502.8160084607308	43.743	0.46447	43.743	43.494	43.959	0					38	16	3	0	0	0	0.0063009	1	9635	9635		99.755	43.578	1	562490			401	8667	242	242	443	443					0.11618629956512905
AGISFIIKR	9	Unmodified	_AGISFIIKR_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.79248046875	2	502.816202	1003.61785	0.42691	0.00021466	-0.40184	-0.00020205	0.025079	1.261E-05	502.81586719788334	43.474	0.49387	43.552	43.347	43.841	0.077515					39	17	3	0	0	0	0.059987	1	9582	9582		70.332	24.632	1	466740			402	8667	242	242	444	444					0.11618629956512905
AGISFIIKR	9	Unmodified	_AGISFIIKR_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.8161926269531	2	502.816202	1003.61785	0.43207	0.00021725	-0.424	-0.00021319	0.0080724	4.0589E-06	502.8158670523028	43.485	0.48574	43.569	43.356	43.841	0.083996					37	17	3	0	0	0	0.011693	1	9557	9557		76.825	33.052	1	626390			403	8667	242	242	445	445					0.11618629956512905
AGISFIINR	9	Unmodified	_AGISFIINR_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;ENST00000457594.2_7:74237150-74267816:-|nuORF	ENSG00000196275|ENST00000451013|GTF2IRD2;ENST00000457594.2_7:74237150-74267816:-|nuORF	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7901611328125	2	495.790184	989.565815	0.75021	0.00037195	-1.1765	-0.00058329	-0.42627	-0.00021134	495.78909415714907	54.687	1.0687	54.687	54.105	55.174	0					96	38	4	0	0	0	0.058995	1	13085	13085		49.554	5.7819	1	2219700			404	6792;10706	243	243	446	446					0.0706146654274562
AGISFIINR	9	Unmodified	_AGISFIINR_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;ENST00000457594.2_7:74237150-74267816:-|nuORF	ENSG00000196275|ENST00000451013|GTF2IRD2;ENST00000457594.2_7:74237150-74267816:-|nuORF	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7889099121094	2	495.790184	989.565815	0.68333	0.00033879	-1.0659	-0.00052847	-0.38258	-0.00018968	495.7889230366679	54.638	0.93226	54.701	54.115	55.048	0.063206					81	34	4	0	0	0	0.058995	1	13070	13070		49.554	3.8144	1	2048600			405	6792;10706	243	243	447	447					0.0706146654274562
AGISFIINR	9	Unmodified	_AGISFIINR_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;ENST00000457594.2_7:74237150-74267816:-|nuORF	ENSG00000196275|ENST00000451013|GTF2IRD2;ENST00000457594.2_7:74237150-74267816:-|nuORF	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7902526855469	2	495.790184	989.565815	0.68413	0.00033919	-1.0566	-0.00052383	-0.37243	-0.00018465	495.7891203319416	54.83	1.0954	54.814	54.197	55.293	-0.015923					82	39	4	0	0	0	0.018449	1	13094	13094		66.457	2.4962	1	2397700			406	6792;10706	243	243	448	448					0.0706146654274562
AGKGRSRK	8	Unmodified	_AGKGRSRK_					0	0	0		ENSG00000128908|ENST00000648947|INO80;ENST00000558270.1_1_15:41272423-41275357:-|nuORF	ENSG00000128908|ENST00000648947|INO80	ENSG00000128908|ENST00000648947|INO80	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.26446533203125	2	430.264668	858.514782	-0.093678	-4.0306E-05	0.10264	4.4163E-05	0.0089626	3.8563E-06	430.26463737311053	79.958	0.65649	79.958	79.638	80.294	0					41	23	2	0	0	0	0.46022	1	20751	20751		2.3027	0	1	488800			407	3398	244	244	449	449					0.07986562288556343
AGKGRSRK	8	Unmodified	_AGKGRSRK_					0	0	0		ENSG00000128908|ENST00000648947|INO80;ENST00000558270.1_1_15:41272423-41275357:-|nuORF	ENSG00000128908|ENST00000648947|INO80	ENSG00000128908|ENST00000648947|INO80	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.26470947265625	2	430.264668	858.514782	-0.038495	-1.6563E-05	0.043286	1.8624E-05	0.0047907	2.0613E-06	430.2646485636853	79.947	0.69768	79.918	79.62	80.318	-0.028931					41	24	2	0	0	0	0.46022	1	20740	20740		2.3027	0	1	576680			408	3398	244	244	450	450					0.07986562288556343
AGKGRSRK	8	Unmodified	_AGKGRSRK_					0	0	0		ENSG00000128908|ENST00000648947|INO80;ENST00000558270.1_1_15:41272423-41275357:-|nuORF	ENSG00000128908|ENST00000648947|INO80	ENSG00000128908|ENST00000648947|INO80	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	430.264668	858.514782	-0.093678	-4.0306E-05	0.10264	4.4163E-05	0.0089626	3.8563E-06	430.26463737311053	79.958	0.65649	79.958	79.638	80.294	0	0.014875	-4.1131E-06	NaN	2.3027	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	488800			409	3398	244	244							0.07986562288556343
AGKGRSRK	8	Unmodified	_AGKGRSRK_					0	0	0		ENSG00000128908|ENST00000648947|INO80;ENST00000558270.1_1_15:41272423-41275357:-|nuORF	ENSG00000128908|ENST00000648947|INO80	ENSG00000128908|ENST00000648947|INO80	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	430.264668	858.514782	-0.05093	-2.1914E-05	0.23403	0.00010069	0.1831	7.878E-05	430.26471141801795	79.893	0.69891	79.954	79.643	80.342	0.061417	0.010708	0.00010895	NaN	2.3027	43	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	407510			410	3398	244	244							0.07986562288556343
AGKHTGIIDPF	11	Unmodified	_AGKHTGIIDPF_					0	0	0			REV__ENSG00000130340|ENST00000392185|SNX9	REV__ENSG00000130340|ENST00000392185|SNX9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.7811889648438	2	578.31148	1154.60841	0.62502	0.00036146	-0.061773	-3.5724E-05	0.56325	0.00032573	578.3112620245807	33.466	1.0789	33.533	33.266	34.344	0.06636					90	38	4	0	0	0	0.32231	1	6691	6691		19.362	1.2156	1	1336900	+		411	15451	245	245	451	451					0.037288168803115695
AGMALGIQK	9	Oxidation (M)	_AGM(Oxidation (M))ALGIQK_		AGM(1)ALGIQK		AGM(100)ALGIQK	0	0	1		ENSG00000174851|ENST00000376901|YIF1A;YIF1A|p.E166Afs*31|1|0.3|ENSG00000174851|chr11:66285521-66285525|CACCT/-|frameshift_variant	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.7496032714844	2	452.74967	903.484787	0.080108	3.6269E-05	-0.33099	-0.00014985	-0.25088	-0.00011359	452.7495867153974	24.225	0.42363	24.225	23.943	24.367	0					50	14	5	0	0	0	0.00268	1	3698	3698		104.8	35.694	1	1304900			412	6823	246	246	452	452		775			0.02918442508348562
AGMALGIQK	9	Oxidation (M)	_AGM(Oxidation (M))ALGIQK_		AGM(1)ALGIQK		AGM(130)ALGIQK	0	0	1		ENSG00000174851|ENST00000376901|YIF1A;YIF1A|p.E166Afs*31|1|0.3|ENSG00000174851|chr11:66285521-66285525|CACCT/-|frameshift_variant	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.74969482421875	2	452.74967	903.484787	0.18308	8.289E-05	-0.16509	-7.4742E-05	0.017996	8.1475E-06	452.7496193915537	24.344	0.87432	24.271	23.997	24.872	-0.072559					59	29	4	0	0	0	0.00033206	1	3737	3737		131.3	42.344	1	1472200			413	6823	246	246	453	453		775			0.02918442508348562
AGMALGIQK	9	Oxidation (M)	_AGM(Oxidation (M))ALGIQK_		AGM(1)ALGIQK		AGM(120)ALGIQK	0	0	1		ENSG00000174851|ENST00000376901|YIF1A;YIF1A|p.E166Afs*31|1|0.3|ENSG00000174851|chr11:66285521-66285525|CACCT/-|frameshift_variant	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7496337890625	2	452.74967	903.484787	0.043842	1.985E-05	-0.023847	-1.0797E-05	0.019995	9.0528E-06	452.7496778474658	24.526	1.3465	24.487	23.993	25.34	-0.038927					59	46	2	0	0	0	0.0014051	1	3726	3726		117.6	48.494	1	1860200			414	6823	246	246	454	454		775			0.02918442508348562
AGMMGVNSFSG	11	Unmodified	_AGMMGVNSFSG_					0	0	0		ENST00000519890.5_1_5:158126121-158500600:-|nuORF;ENST00000519739.5_1_5:158126121-158523319:-|nuORF;ENST00000522192.5_1_5:158126121-158523561:-|nuORF;nc|ENSG00000164330|Q9UH73-2|EBF1;ENST00000518836.5_1_5:158126121-158526593:-|nuORF;ENSG00000164330|ENST00000313708|EBF1	ENST00000519890.5_1_5:158126121-158500600:-|nuORF	ENST00000519890.5_1_5:158126121-158500600:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8137817382812	2	529.225702	1056.43685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.152	1	91.243	90.743	91.743	0.090668								0	0	0	0.35514	1	24182	24182		7.1017	1.3413	1				415	5833	247	247	455	455					-0.08910999474005621
AGNRKTKSIV	10	Unmodified	_AGNRKTKSIV_					0	0	0		PMP2|p.D77G|1|0.06|ENSG00000147588|chr8:81444833-81444833|T/C|missense_variant	PMP2|p.D77G|1|0.06|ENSG00000147588|chr8:81444833-81444833|T/C|missense_variant	PMP2|p.D77G|1|0.06|ENSG00000147588|chr8:81444833-81444833|T/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7843017578125	2	537.324922	1072.63529	0.25459	0.0001368	-0.081544	-4.3816E-05	0.17304	9.2981E-05	537.324901456945	27.111	0.34032	27.089	26.926	27.266	-0.021412					17	11	2	0	0	0	0.31889	1	4549	4549		6.2058	0	1	93819			416	13049	248	248	456	456					0.10187925491504757
AGPAALGPRGV	11	Unmodified	_AGPAALGPRGV_					0	0	0			REV__nc|ENSG00000214357|A8MQ27-2|NEURL1B	REV__nc|ENSG00000214357|A8MQ27-2|NEURL1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2560119628906	2	483.279983	964.545414	-0.018383	-8.8842E-06	-0.20537	-9.9252E-05	-0.22376	-0.00010814	483.2797879078269	30.401	0.45205	30.429	30.16	30.612	0.027157					22	15	2	0	0	0	0.32951	1	5501	5501		8.7454	2.0222	1	71792	+		417	19059	249	249	457	457					0.06172295882936396
AGPGTLLLES	10	Unmodified	_AGPGTLLLES_					0	0	0			REV__ARHGEF17|p.P1183Lfs*7|1|0.44|ENSG00000110237|chr11:73355626-73355626|C/-|frameshift_variant	REV__ARHGEF17|p.P1183Lfs*7|1|0.44|ENSG00000110237|chr11:73355626-73355626|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2771911621094	2	479.266207	956.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.65	1	72.704	72.204	73.204	0.053833								0	0	0	0.36922	1	18522	18522		6.7232	0.51738	1		+		418	13113	250	250	458	458					0.037863478320673494
AGPPRATPLQ	10	Unmodified	_AGPPRATPLQ_					0	0	0			REV__ENST00000559814.5_1_15:29346087-29400775:+|nuORF	REV__ENST00000559814.5_1_15:29346087-29400775:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.29791259765625	2	504.285266	1006.55598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.466	1	17.348	16.848	17.848	-0.11739								0	0	0	0.34683	1	1640	1640		16.149	1.3108	1		+		419	22291	251	251	459	459					0.0529627853737793
AGQRHTKDLAK	11	Unmodified	_AGQRHTKDLAK_					0	0	0			REV__nc|ENSG00000133392|P35749-4|MYH11	REV__nc|ENSG00000133392|P35749-4|MYH11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5698547363281	3	408.898432	1223.67347	-0.2443	-9.9892E-05	3.134	0.0012815	2.8897	0.0011816	408.90006246569027	25.553	0.2268	25.497	25.365	25.592	-0.055931					10	7	2	0	0	0	0.33122	1	4112	4112		7.0371	4.4058	1	71407	+		420	15621	252	252	460	460					0.07057811406161818
AGRMLKFSVF	10	Unmodified	_AGRMLKFSVF_					0	0	0		ENST00000486074.2_1_10:60966594-61005348:+|nuORF;nc|ENSG00000165443|Q96FC7-2|PHYHIPL;ENSG00000165443|ENST00000373880|PHYHIPL;ENST00000472199.1_1_10:60996338-60998466:+|nuORF	ENST00000486074.2_1_10:60966594-61005348:+|nuORF	ENST00000486074.2_1_10:60966594-61005348:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3207397460938	2	578.320794	1154.62703	0.31024	0.00017942	0.25437	0.00014711	0.56461	0.00032653	578.3207372612743	82.173	2.3333	82.242	81.461	83.795	0.068985					204	95	3	0	0	0	0.40106	1	21486	21486		3.2813	3.2813	1	1075100			421	5961	253	253	461	461					0.05590655250534837
AGRPIQNSAL	10	Unmodified	_AGRPIQNSAL_					0	0	0		ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7780151367188	2	513.788173	1025.56179	0.27482	0.0001412	-0.62096	-0.00031904	-0.34614	-0.00017784	513.7879239981598	17.009	1.0001	16.948	16.56	17.56	-0.060429					102	35	4	0	0	0	0.37133	1	1632	1632		8.7454	0.15213	1	1167400			422	3143	254	254	462	462					0.05003377049047231
AGSLLALGPK	10	Unmodified	_AGSLLALGPK_					0	0	0			REV__ENST00000521006.5_1_10:102729594-102732333:+|nuORF	REV__ENST00000521006.5_1_10:102729594-102732333:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.2994689941406	2	463.78711	925.559667	0.31164	0.00014453	0.5092	0.00023616	0.82084	0.0003807	463.78763811173	40.229	0.98548	40.328	39.977	40.962	0.099407					56	35	3	0	0	0	0.30093	1	8498	8498		21.537	5.6898	1	343680	+		423	21894	255	255	463	463					0.09390948311227021
AGSRLEYGAF	10	Unmodified	_AGSRLEYGAF_					0	0	0		ENST00000416961.6_1_8:74888431-74891037:+|nuORF	ENST00000416961.6_1_8:74888431-74891037:+|nuORF	ENST00000416961.6_1_8:74888431-74891037:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8201293945312	2	535.766906	1069.51926	0.43652	0.00023387	0.084949	4.5513E-05	0.52147	0.00027939	535.7668683455946	45.001	0.47825	45.07	44.867	45.345	0.068569					26	16	2	0	0	0	0.31323	1	10073	10073		15.248	1.3424	1	259230			424	10326	256	256	464	464					-0.012720180792030078
AGSRLEYGAF	10	Unmodified	_AGSRLEYGAF_					0	0	0		ENST00000416961.6_1_8:74888431-74891037:+|nuORF	ENST00000416961.6_1_8:74888431-74891037:+|nuORF	ENST00000416961.6_1_8:74888431-74891037:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	535.766906	1069.51926	0.585	0.00031342	1.819	0.00097458	2.404	0.001288	536.2713833863032	45.08	0.10623	45.08	45.015	45.121	0	0.0049735	0.0018461	NaN	10.8	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100710			425	10326	256	256							-0.012720180792030078
AGSSQSLSFPK	11	Unmodified	_AGSSQSLSFPK_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.7857055664062	2	554.785296	1107.55604	0.42328	0.00023483	0.58939	0.00032698	1.0127	0.00056181	554.7854805632636	36.396	0.71872	36.396	36.037	36.756	0					53	25	3	0	0	0	0.23368	1	7406	7406		28.181	13.224	1	508670			426	2328	257	257	465	465					0.006562337467130419
AGSVRSECF	9	Unmodified	_AGSVRSECF_					0	0	0			REV__ENST00000267202.6_1_12:123349912-123350128:-|nuORF	REV__ENST00000267202.6_1_12:123349912-123350128:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.31298828125	2	478.218734	954.422915	0.32809	0.0001569	0.63594	0.00030412	0.96403	0.00046102	478.2189665889799	70.668	0.59008	70.643	70.353	70.943	-0.024864					34	20	2	0	0	0	0.24913	1	17946	17946		7.9102	0	1	263130	+		427	19659	258	258	466	466					-0.056119089107937725
AGTDIFLVV	9	Unmodified	_AGTDIFLVV_					0	0	0		ENST00000481918.1_1_1:213186656-213188829:-|nuORF	ENST00000481918.1_1_1:213186656-213188829:-|nuORF	ENST00000481918.1_1_1:213186656-213188829:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7648010253906	2	467.765843	933.517133	0.067347	3.1503E-05	-0.59948	-0.00028041	-0.53213	-0.00024891	467.7653443008048	82.092	0.8475	82.092	81.741	82.589	0					41	31	2	0	0	0	0.20344	1	21441	21441		23.148	1.4018	1	364030			428	11038	259	259	467	467					0.04771553183002197
AGTDIFLVV	9	Unmodified	_AGTDIFLVV_					0	0	0		ENST00000481918.1_1_1:213186656-213188829:-|nuORF	ENST00000481918.1_1_1:213186656-213188829:-|nuORF	ENST00000481918.1_1_1:213186656-213188829:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.765869140625	2	467.765843	933.517133	-0.07587	-3.5489E-05	0.20215	9.4558E-05	0.12628	5.9069E-05	467.7657814282673	82.025	0.72815	82.094	81.6	82.328	0.068993					41	30	2	0	0	0	0.1659	1	21397	21397		36.044	7.5574	1	270490			429	11038	259	259	468	468					0.04771553183002197
AGTDIFLVV	9	Unmodified	_AGTDIFLVV_					0	0	0		ENST00000481918.1_1_1:213186656-213188829:-|nuORF	ENST00000481918.1_1_1:213186656-213188829:-|nuORF	ENST00000481918.1_1_1:213186656-213188829:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2499084472656	2	467.765843	933.517133	0.26365	0.00012333	-0.20953	-9.8009E-05	0.054124	2.5317E-05	467.7656366038793	82.096	0.40738	82.072	81.813	82.22	-0.02404					27	15	2	0	0	0	0.21905	1	21394	21394		23.148	1.4018	1	192220			430	11038	259	259	469	469					0.04771553183002197
AGTSVYLKM	9	Oxidation (M)	_AGTSVYLKM(Oxidation (M))_		AGTSVYLKM(1)		AGTSVYLKM(110)	0	0	1		ENSG00000135094|ENST00000257549|SDS;ENST00000546639.1_1_12:113836911-113837513:-|nuORF;ENST00000553112.5_1_12:113834968-113841579:-|nuORF	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.254638671875	2	493.254785	984.495018	0.54214	0.00026741	-0.76536	-0.00037752	-0.22322	-0.00011011	493.25432861217735	29.666	0.50453	29.666	29.465	29.97	0					31	17	2	0	0	0	0.0019475	1	5348	5348		110.67	78.369	1	446570			431	3843	260	260	470	470		480			0.002150054429193915
AGTSVYLKM	9	Oxidation (M)	_AGTSVYLKM(Oxidation (M))_		AGTSVYLKM(1)		AGTSVYLKM(93)	0	0	1		ENSG00000135094|ENST00000257549|SDS;ENST00000546639.1_1_12:113836911-113837513:-|nuORF;ENST00000553112.5_1_12:113834968-113841579:-|nuORF	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.2546081542969	2	493.254785	984.495018	0.12242	6.0386E-05	-0.38858	-0.00019167	-0.26616	-0.00013129	493.2544944417288	29.643	0.55243	29.657	29.39	29.943	0.013474					33	18	2	0	0	0	0.0042138	1	5340	5340		92.653	60.348	1	447110			432	3843	260	260	471	471		480			0.002150054429193915
AGTSVYLKM	9	Oxidation (M)	_AGTSVYLKM(Oxidation (M))_					0	0	1		ENSG00000135094|ENST00000257549|SDS;ENST00000546639.1_1_12:113836911-113837513:-|nuORF;ENST00000553112.5_1_12:113834968-113841579:-|nuORF	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	493.254785	984.495018	0.42461	0.00020944	-0.57191	-0.0002821	-0.1473	-7.2656E-05	493.254324725715	29.659	0.5873	29.671	29.389	29.976	0.012264	0.0065838	7.4421E-06	NaN	110.67	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	442580			433	3843	260	260				480			0.002150054429193915
AGTYLPQSYLI	11	Unmodified	_AGTYLPQSYLI_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.3272705078125	2	613.326796	1224.63904	0.16048	9.8426E-05	0.10132	6.2142E-05	0.2618	0.00016057	613.3269928575446	75.453	0.69673	75.453	75.154	75.85	0					68	24	4	0	0	0	0.022858	2	19363	19363;19412		61.09	36.099	1	879040			434	3949	261	261	472;473	472					0.03570550474705669
AGTYLPQSYLI	11	Unmodified	_AGTYLPQSYLI_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	613.326904296875	2	613.326796	1224.63904	0.28206	0.00017299	0.041329	2.5348E-05	0.32339	0.00019834	613.3269433219065	75.366	0.70434	75.419	75.131	75.836	0.052361					71	25	4	0	0	0	0.010431	1	19356	19356		68.76	40.265	1	861640			435	3949	261	261	474	474					0.03570550474705669
AGTYLPQSYLI	11	Unmodified	_AGTYLPQSYLI_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	613.3268432617188	2	613.326796	1224.63904	0.384	0.00023552	-0.22558	-0.00013835	0.15842	9.7166E-05	613.3267363163246	75.476	0.59261	75.445	75.184	75.777	-0.031479					65	21	4	0	0	0	0.010431	1	19388	19388		68.76	40.265	1	960080			436	3949	261	261	475	475					0.03570550474705669
AGVFVDATK	9	Unmodified	_AGVFVDATK_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.28424072265625	2	454.247818	906.481082	0.28559	0.00012973	0.0064334	2.9224E-06	0.29202	0.00013265	454.24795478999994	31.997	0.58586	31.997	31.829	32.415	0					30	20	2	0	0	0	0.23235	1	6100	6100		21.537	4.4241	1	292950			437	12859	262	262	476	476					0.024100960061218757
AGVLPTDFF	9	Unmodified	_AGVLPTDFF_					0	0	0		nc|ENSG00000140534|Q7Z2Z1-2|TICRR;ENSG00000140534|ENST00000268138|TICRR	nc|ENSG00000140534|Q7Z2Z1-2|TICRR	nc|ENSG00000140534|Q7Z2Z1-2|TICRR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.302490234375	2	483.750193	965.485833	0.22911	0.00011083	0.16981	8.2144E-05	0.39891	0.00019297	483.7503851062236	70.214	0.73035	70.214	69.843	70.573	0					40	26	2	0	0	0	0.2451	1	17678	17678		10.824	0	1	235540			438	4315	263	263	477	477					0.0017098014890279956
AHHFFHRYN	9	Unmodified	_AHHFFHRYN_					0	0	0			REV__ENSG00000145725|ENST00000358359|PPIP5K2	REV__ENSG00000145725|ENST00000358359|PPIP5K2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5299987792969	3	410.196813	1227.56861	-0.38667	-0.00015861	-1.1426	-0.00046867	-1.5292	-0.00062728	410.19607108190854	13.477	0.20123	13.477	13.396	13.597	0					9	6	2	0	0	0	0.26228	1	448	448		0.26902	0	1	15830	+		439	16302	264	264	478	478					-0.036072652797201954
AHHKTLPYFI	10	Unmodified	_AHHKTLPYFI_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5605163574219	3	409.560869	1225.66078	-0.42946	-0.00017589	-0.23024	-9.4297E-05	-0.6597	-0.00027019	409.5607429388786	60.121	1.0926	60.121	59.787	60.88	0					138	39	5	0	0	0	0.36698	1	14721	14721		9.544	9.544	1	14812000			440	6334	265	265	479	479					0.05697400013946208
AHHLRRALS	9	Unmodified	_AHHLRRALS_					0	0	0			REV__ENSG00000156966|ENST00000287590|B3GNT7	REV__ENSG00000156966|ENST00000287590|B3GNT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7604370117188	2	530.809774	1059.60499	0.4901	0.00026015	-2.4465	-0.0012986	-1.9564	-0.0010385	530.8082500998848	36.85	0.29797	36.937	36.734	37.032	0.08741					19	10	2	0	0	0	0.21905	1	7553	7553		23.148	10.106	1	226210	+		441	16763	266	266	480	480					0.0775761161698938
AHHLRRALS	9	Unmodified	_AHHLRRALS_					0	0	0			REV__ENSG00000156966|ENST00000287590|B3GNT7	REV__ENSG00000156966|ENST00000287590|B3GNT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7604370117188	2	530.809774	1059.60499	0.82364	0.00043719	-2.6504	-0.0014069	-1.8268	-0.00096967	530.8080866901904	36.846	0.29618	36.939	36.74	37.036	0.093018					17	10	2	0	0	0	0.21905	1	7548	7548		23.148	16.943	1	203020	+		442	16763	266	266	481	481					0.0775761161698938
AHKACMMGVTF	11	Unmodified	_AHKACMMGVTF_					0	0	0		OR8B8|p.T160K|1|0.15|ENSG00000197125|chr11:124440607-124440607|G/T|missense_variant	OR8B8|p.T160K|1|0.15|ENSG00000197125|chr11:124440607-124440607|G/T|missense_variant	OR8B8|p.T160K|1|0.15|ENSG00000197125|chr11:124440607-124440607|G/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8562622070312	2	598.274672	1194.53479	0.48656	0.0002911	-0.23478	-0.00014046	0.25178	0.00015063	598.2743561355653	81.957	0.46698	81.957	81.699	82.166	0					35	17	3	0	0	0	0.32736	1	21350	21350		8.1555	0	1	238240			443	13038	267	267	482	482					-0.054695141496495125
AHKACMMGVTF	11	Unmodified	_AHKACMMGVTF_					0	0	0		OR8B8|p.T160K|1|0.15|ENSG00000197125|chr11:124440607-124440607|G/T|missense_variant	OR8B8|p.T160K|1|0.15|ENSG00000197125|chr11:124440607-124440607|G/T|missense_variant	OR8B8|p.T160K|1|0.15|ENSG00000197125|chr11:124440607-124440607|G/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8563842773438	2	598.274672	1194.53479	0.31623	0.00018919	0.11197	6.6986E-05	0.42819	0.00025618	598.274646633376	81.877	0.47883	81.946	81.675	82.154	0.068993					43	20	3	0	0	0	0.32951	1	21313	21313		8.7454	2.0222	1	363280			444	13038	267	267	483	483					-0.054695141496495125
AHKACMMGVTF	11	Unmodified	_AHKACMMGVTF_					0	0	0		OR8B8|p.T160K|1|0.15|ENSG00000197125|chr11:124440607-124440607|G/T|missense_variant	OR8B8|p.T160K|1|0.15|ENSG00000197125|chr11:124440607-124440607|G/T|missense_variant	OR8B8|p.T160K|1|0.15|ENSG00000197125|chr11:124440607-124440607|G/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8562622070312	2	598.274672	1194.53479	0.43041	0.00025751	-0.48824	-0.0002921	-0.057827	-3.4597E-05	598.2743860698785	81.919	0.45139	81.895	81.685	82.137	-0.02404					53	17	5	0	0	0	0.32736	1	21361	21361		12.241	1.4167	1	500900			445	13038	267	267	484	484					-0.054695141496495125
AHLAAVKL	8	Unmodified	_AHLAAVKL_					0	0	0		nc|ENSG00000137494|Q8N9B4|ANKRD42;ENSG00000137494|ENST00000533342|ANKRD42	nc|ENSG00000137494|Q8N9B4|ANKRD42	nc|ENSG00000137494|Q8N9B4|ANKRD42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.22076416015625	2	411.763438	821.512323	-0.04262	-1.7549E-05	0.057163	2.3538E-05	0.014543	5.9884E-06	411.76344776376146	40.697	2.1715	40.697	39.242	41.413	0					182	79	4	0	0	0	0.34297	1	8507	8507		2.8892	2.0956	1	473900			446	4051	268	268	485	485					0.0944271383089017
AHLFLHHH	8	Unmodified	_AHLFLHHH_					0	0	0		ENST00000537045.5_1_22:19023939-19024314:-|nuORF	ENST00000537045.5_1_22:19023939-19024314:-|nuORF	ENST00000537045.5_1_22:19023939-19024314:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.3028259277344	2	506.26721	1010.51987	0.52584	0.00026621	-1.9961	-0.0010106	-1.4703	-0.00074436	506.266391054274	40.197	0.64225	40.29	39.943	40.585	0.09267					32	22	2	0	0	0	0.34147	1	8619	8619		6.3541	0	1	303190			447	11687	269	269	486	486					0.015028661511678365
AHLLPAVR	8	Unmodified	_AHLLPAVR_					0	0	0			REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.94500732421875	2	438.774337	875.534121	-0.15513	-6.8065E-05	-1.0078	-0.0004422	-1.1629	-0.00051027	438.77395567289193	31.377	0.46501	31.377	31.171	31.636	0					23	16	2	0	0	0	0.34185	1	5910	5910		10.183	0.83596	1	233290	+		448	15757	270	270	487	487					0.0913751857947318
AHLLPAVR	8	Unmodified	_AHLLPAVR_					0	0	0			REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	438.774337	875.534121	-0.19949	-8.7532E-05	-0.14187	-6.225E-05	-0.34136	-0.00014978	438.77395118967155	31.351	0.41749	31.393	31.156	31.574	0.042364	0.0077973	0.00068172	NaN	10.183	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225030	+		449	15757	270	270							0.0913751857947318
AHLLPICAL	9	Unmodified	_AHLLPICAL_					0	0	0		nc|ENSG00000114378|Q12794-4|HYAL1;nc|ENSG00000114378|Q12794-7|HYAL1;nc|ENSG00000114378|Q12794-2|HYAL1;ENSG00000114378|ENST00000395144|HYAL1	nc|ENSG00000114378|Q12794-4|HYAL1	nc|ENSG00000114378|Q12794-4|HYAL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7799987792969	2	475.778231	949.541908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.283	1	13.184	12.684	13.684	-0.099291								0	0	0	0.22457	1	380	380		14.582	5.1986	1				450	2561	271	271	488	488					0.06511909784728687
AHLWFDKT	8	Unmodified	_AHLWFDKT_					0	0	0			REV__nc|ENSG00000137033|O95760-4|IL33	REV__nc|ENSG00000137033|O95760-4|IL33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2776184082031	2	509.261259	1016.50797	0.16879	8.5957E-05	-1.5177	-0.00077288	-1.3489	-0.00068692	509.2608251314802	27.109	0.4275	27.087	26.788	27.215	-0.021412					20	14	2	0	0	0	0.3439	1	4477	4477		2.8892	0	1	53325	+		451	15841	272	272	489	489					0.0003720461731973046
AHPEGQLK	8	Unmodified	_AHPEGQLK_					0	0	0		ENST00000485798.5_1_19:49403599-49425678:+|nuORF;ENST00000492367.1_1_19:49422384-49425678:+|nuORF;ENSG00000104805|ENST00000405315|NUCB1	ENST00000485798.5_1_19:49403599-49425678:+|nuORF	ENST00000485798.5_1_19:49403599-49425678:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2378845214844	2	440.237784	878.461016	-0.1177	-5.1815E-05	0.64093	0.00028216	0.52323	0.00023035	440.23787184464356	15.977	0.64016	15.863	15.663	16.304	-0.11434					31	21	2	0	0	0	0.28696	1	1187	1187		32.305	3.8186	1	158060			452	1917	273	273	490	490					0.01692345066192047
AHPEGQLK	8	Unmodified	_AHPEGQLK_					0	0	0		ENST00000485798.5_1_19:49403599-49425678:+|nuORF;ENST00000492367.1_1_19:49422384-49425678:+|nuORF;ENSG00000104805|ENST00000405315|NUCB1	ENST00000485798.5_1_19:49403599-49425678:+|nuORF	ENST00000485798.5_1_19:49403599-49425678:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.23760986328125	2	440.237784	878.461016	-0.03149	-1.3863E-05	0.62796	0.00027645	0.59647	0.00026259	440.23776320413907	15.94	0.6274	15.878	15.638	16.266	-0.062534					46	21	3	0	0	0	0.3474	1	1155	1155		25.399	3.6527	1	135410			453	1917	273	273	491	491					0.01692345066192047
AHPPLLVL	8	Unmodified	_AHPPLLVL_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.2735290527344	2	430.273638	858.532724	-0.096219	-4.14E-05	-0.087069	-3.7463E-05	-0.18329	-7.8864E-05	430.2735153934762	57.877	1.0897	57.877	57.323	58.413	0					80	38	3	0	0	0	0.28567	2	13963	13963;14012		32.454	8.2437	1	1324300			454	3517	274	274	492;493	492					0.09779884490706081
AHPPLLVL	8	Unmodified	_AHPPLLVL_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.27349853515625	2	430.273638	858.532724	-0.022373	-9.6267E-06	-0.25413	-0.00010935	-0.2765	-0.00011897	430.2734337507061	57.793	0.76115	57.879	57.491	58.252	0.085617					68	27	3	0	0	0	0.28567	1	13948	13948		32.454	8.2437	1	1609300			455	3517	274	274	494	494					0.09779884490706081
AHPPLLVL	8	Unmodified	_AHPPLLVL_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.2736511230469	2	430.273638	858.532724	-0.038407	-1.6526E-05	-0.0016257	-6.9952E-07	-0.040033	-1.7225E-05	430.2735186241817	57.918	1.0454	57.901	57.31	58.355	-0.017197					84	38	3	0	0	0	0.28567	2	13968	13968;14017		32.454	8.2437	1	1510100			456	3517	274	274	495;496	495					0.09779884490706081
AHPYSRKF	8	Unmodified	_AHPYSRKF_					0	0	0			REV__nc|ENSG00000129514|P55317-2|FOXA1	REV__nc|ENSG00000129514|P55317-2|FOXA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.5938720703125	2	503.266876	1004.5192	0.44137	0.00022213	-0.63247	-0.0003183	-0.1911	-9.6173E-05	503.2664333579737	59.164	0.59808	59.149	58.889	59.488	-0.014267					36	20	2	0	0	0	0.34131	1	14327	14327		12.532	0.89125	1	498670	+		457	15418	275	275	497	497					0.01712026711470571
AHRRLSSLT	9	Unmodified	_AHRRLSSLT_					0	0	0			REV__ENSG00000177311|ENST00000321464|ZBTB38	REV__ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2101440429688	2	520.801614	1039.58868	0.2111	0.00010994	0.25631	0.00013349	0.46741	0.00024343	520.8018665083523	22.543	0.36361	22.455	22.321	22.685	-0.087608					15	12	2	0	0	0	0.25417	1	3221	3221		4.756	0	1	24877	+		458	17982	276	276	498	498					0.07046485660225699
AHRSFLYA	8	Unmodified	_AHRSFLYA_					0	0	0			REV__ENST00000574992.5_1_17:79873525-79873585:-|nuORF	REV__ENST00000574992.5_1_17:79873525-79873585:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.3065185546875	2	482.753601	963.49265	0.42942	0.00020731	1.7607	0.00085	2.1902	0.0010573	482.7529817984935	78.966	0.78866	79.024	78.39	79.179	0.058151					44	31	2	0	0	0	0.34185	1	20341	20341		10.183	1.5901	1	163870	+		459	22439	277	277	499	499					0.00944337820135388
AHTQFKVF	8	Unmodified	_AHTQFKVF_					0	0	0			REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.263916015625	2	489.263802	976.513051	0.37799	0.00018494	-0.19237	-9.4119E-05	0.18562	9.0818E-05	489.26386784368503	52.751	1.6469	52.751	52.267	53.914	0					183	60	5	0	0	0	0.32038	1	12337	12337		28.487	1.6032	1	24440000	+		460	16852	278	278	500	500					0.023855084799492943
AHTQFKVF	8	Unmodified	_AHTQFKVF_					0	0	0			REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	REV__nc|ENSG00000159409|Q5SZQ8-4|CELF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2638244628906	2	489.263802	976.513051	0.31309	0.00015318	-0.026242	-1.2839E-05	0.28685	0.00014034	489.2639170266812	52.862	1.8545	52.861	52.245	54.1	-0.001236					209	68	6	0	0	0	0.32038	1	12366	12366		28.487	1.6032	1	22454000	+		461	16852	278	278	501	501					0.023855084799492943
AIANFTNQK	9	Unmodified	_AIANFTNQK_					0	0	0		nc|ENSG00000138756|Q9NSY1-2|BMP2K;nc|ENSG00000138756|Q9NSY1-3|BMP2K;ENSG00000138756|ENST00000502613|BMP2K	nc|ENSG00000138756|Q9NSY1-2|BMP2K	nc|ENSG00000138756|Q9NSY1-2|BMP2K	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.7694396972656	2	503.769448	1005.52434	0.10445	5.2619E-05	0.18693	9.4171E-05	0.29138	0.00014679	503.7694755592246	28.394	0.5218	28.394	28.207	28.729	0					32	17	2	0	0	0	0.0037449	2	4934	4934;4983		96.367	58.191	1	427050			462	4186	279	279	502;503	502					0.021802857834245515
AIANFTNQK	9	Unmodified	_AIANFTNQK_					0	0	0		nc|ENSG00000138756|Q9NSY1-2|BMP2K;nc|ENSG00000138756|Q9NSY1-3|BMP2K;ENSG00000138756|ENST00000502613|BMP2K	nc|ENSG00000138756|Q9NSY1-2|BMP2K	nc|ENSG00000138756|Q9NSY1-2|BMP2K	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7697448730469	2	503.769448	1005.52434	0.13514	6.8077E-05	0.29764	0.00014994	0.43278	0.00021802	503.7695190560822	28.447	0.43743	28.442	28.221	28.658	-0.0042572					27	15	2	0	0	0	0.011693	1	4940	4940		76.825	50.557	1	508970			463	4186	279	279	504	504					0.021802857834245515
AIAQAESLRYK	11	Unmodified	_AIAQAESLRYK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000487417.1_1_12:62415587-62415818:-|nuORF;ENST00000433853.1_1_3:183867695-183868220:+|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.3486938476562	2	625.348594	1248.68264	0.33724	0.0002109	0.12404	7.7566E-05	0.46128	0.00028846	625.3485635222527	30.766	0.69802	30.766	30.473	31.171	0					51	24	4	0	0	0	0.0028803	1	5693	5693		84.738	57.514	1	543860			464	4856	280	280	505	505					0.06824159971824884
AIAQAESLRYK	11	Unmodified	_AIAQAESLRYK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000487417.1_1_12:62415587-62415818:-|nuORF;ENST00000433853.1_1_3:183867695-183868220:+|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.3486938476562	2	625.348594	1248.68264	-0.0029714	-1.8582E-06	0.36826	0.00023029	0.36529	0.00022843	625.3486970754659	30.711	0.63465	30.738	30.394	31.029	0.027157					45	22	4	0	0	0	1.056E-08	1	5655	5655		142.92	104.3	1	523560			465	4856	280	280	506	506					0.06824159971824884
AIAQAESLRYK	11	Unmodified	_AIAQAESLRYK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000487417.1_1_12:62415587-62415818:-|nuORF;ENST00000433853.1_1_3:183867695-183868220:+|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	625.348594	1248.68264	-0.025722	-1.6085E-05	0.46745	0.00029232	0.44173	0.00027624	625.3487825233108	30.747	0.54071	30.775	30.523	31.063	0.027946	0.015475	0.00019718	NaN	142.92	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475630			466	4856	280	280							0.06824159971824884
AIASTLVHK	9	Unmodified	_AIASTLVHK_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.28466796875	2	470.284734	938.554916	-0.052858	-2.4858E-05	-0.1918	-9.0199E-05	-0.24465	-0.00011506	470.28445127525595	23.989	0.78672	23.989	23.699	24.486	0					46	26	3	0	0	0	0.088443	1	3607	3607		39.95	10.868	1	120110			467	1369	281	281	507	507					0.08318064168474848
AIASTLVHK	9	Unmodified	_AIASTLVHK_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.28436279296875	2	470.284734	938.554916	0.10283	4.8361E-05	-0.39131	-0.00018403	-0.28848	-0.00013567	470.28435717725057	24.082	0.51033	24.009	23.756	24.267	-0.072559					41	16	3	0	0	0	0.088443	1	3666	3666		39.95	10.868	1	137450			468	1369	281	281	508	508					0.08318064168474848
AICIPLYRD	9	Unmodified	_AICIPLYRD_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;ENST00000504256.5_1_4:25415963-25416008:+|nuORF	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2766723632812	2	532.283877	1062.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.404	1	94.404	93.904	94.904	0								0	0	0	0.25631	1	25177	25177		4.3292	0.73274	1				469	681	282	282	509	509					0.024426870882052754
AIDQLHLEY	9	Unmodified	_AIDQLHLEY_					0	0	0		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8349609375	2	551.282389	1100.55022	0.7145	0.00039389	1.8112	0.0009985	2.5257	0.0013924	551.7849972906082	54.66	0.35065	54.723	54.483	54.834	0.063202					26	12	3	0	0	0	0.18936	1	13013	13013		26.268	8.1332	1	556430			470	7	283	283	510	510					0.003971352350617963
AIDQLHLEY	9	Unmodified	_AIDQLHLEY_					0	0	0		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8351440429688	2	551.282389	1100.55022	0.75349	0.00041539	-0.62041	-0.00034202	0.13308	7.3366E-05	551.7838927077842	54.902	0.45647	54.886	54.55	55.006	-0.015923					29	16	3	0	0	0	0.18936	1	13070	13070		32.786	20.254	1	767170			471	7	283	283	511	511					0.003971352350617963
AIDRPSQKLLK	11	Unmodified	_AIDRPSQKLLK_					0	0	0		ENST00000493388.5_1_6:30594710-30608409:+|nuORF;ENST00000468713.5_1_6:30594689-30613691:+|nuORF;nc|ENSG00000137343|Q5SQI0-7|ATAT1;nc|ENSG00000137343|Q5SQI0-6|ATAT1;nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1;nc|ENSG00000137343|Q5SQI0-3|ATAT1;ENSG00000137343|ENST00000330083|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1	ENST00000493388.5_1_6:30594710-30608409:+|nuORF	ENST00000493388.5_1_6:30594710-30608409:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.59405517578125	3	423.59435	1267.76122	-0.18093	-7.6642E-05	-0.4266	-0.00018071	-0.60754	-0.00025735	423.59413447329945	25.571	0.6789	25.571	25.12	25.798	0					66	22	4	0	0	0	0.012274	2	4087	4087;4123		64.86	28.865	1	645110			472	4043	284	284	512;513	512					0.13805012276952766
AIDRPSQKLLK	11	Unmodified	_AIDRPSQKLLK_					0	0	0		ENST00000493388.5_1_6:30594710-30608409:+|nuORF;ENST00000468713.5_1_6:30594689-30613691:+|nuORF;nc|ENSG00000137343|Q5SQI0-7|ATAT1;nc|ENSG00000137343|Q5SQI0-6|ATAT1;nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1;nc|ENSG00000137343|Q5SQI0-3|ATAT1;ENSG00000137343|ENST00000330083|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1	ENST00000493388.5_1_6:30594710-30608409:+|nuORF	ENST00000493388.5_1_6:30594710-30608409:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.5941467285156	3	423.59435	1267.76122	-0.3598	-0.00015241	-0.1647	-6.9764E-05	-0.5245	-0.00022218	423.59424702257576	25.592	0.72132	25.536	25.074	25.796	-0.055931					62	23	4	0	0	0	0.033944	1	4103	4103		57.885	27.53	1	714690			473	4043	284	284	514	514					0.13805012276952766
AIDRPSQKLLK	11	Unmodified	_AIDRPSQKLLK_					0	0	0		ENST00000493388.5_1_6:30594710-30608409:+|nuORF;ENST00000468713.5_1_6:30594689-30613691:+|nuORF;nc|ENSG00000137343|Q5SQI0-7|ATAT1;nc|ENSG00000137343|Q5SQI0-6|ATAT1;nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1;nc|ENSG00000137343|Q5SQI0-3|ATAT1;ENSG00000137343|ENST00000330083|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1	ENST00000493388.5_1_6:30594710-30608409:+|nuORF	ENST00000493388.5_1_6:30594710-30608409:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.5941162109375	3	423.59435	1267.76122	-0.29334	-0.00012426	-0.21825	-9.245E-05	-0.51159	-0.00021671	423.5942367620067	25.626	0.66951	25.598	25.157	25.827	-0.028116					71	23	4	0	0	0	0.090382	2	4132	4132;4144		41.567	16.412	1	699040			474	4043	284	284	515;516	515					0.13805012276952766
AIEDDSEEES	10	Unmodified	_AIEDDSEEES_					0	0	0			REV__WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant	REV__WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3436889648438	2	562.217305	1122.42006	0.39664	0.000223	0.10432	5.8653E-05	0.50096	0.00028165	562.2172615673493	82.46	0.42043	82.46	82.287	82.708	0					27	15	2	0	0	0	0.31847	1	21502	21502		6.7232	3.4419	1	127490	+		475	17090	285	285	517	517					-0.1362555034527304
AIEDDSEEES	10	Unmodified	_AIEDDSEEES_					0	0	0			REV__WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant	REV__WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3438110351562	2	562.217305	1122.42006	0.34875	0.00019607	0.13423	7.5467E-05	0.48298	0.00027154	562.2172514573377	82.348	0.41086	82.421	82.24	82.651	0.073097					34	16	3	0	0	0	0.31847	1	21518	21518		6.7232	3.1267	1	205330	+		476	17090	285	285	518	518					-0.1362555034527304
AIEKQKLFFF	10	Unmodified	_AIEKQKLFFF_					0	0	0		ENST00000561407.1_1_15:52100667-52102475:+|nuORF	ENST00000561407.1_1_15:52100667-52102475:+|nuORF	ENST00000561407.1_1_15:52100667-52102475:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.9395751953125	3	424.244658	1269.71214	0.069776	2.9602E-05	-0.19434	-8.2447E-05	-0.12456	-5.2845E-05	424.24462383782867	42.007	0.22858	42.095	42.012	42.241	0.087811					10	7	2	0	0	0	0.3179	1	9113	9113		8.9762	0.22446	1	242240			477	11911	286	286	519	519					0.08807723987979443
AIFEIVLNR	9	Unmodified	_AIFEIVLNR_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.8314819335938	2	537.818941	1073.62333	0.35191	0.00018926	0.13825	7.4355E-05	0.49016	0.00026362	537.8191989436552	64.956	0.61977	64.956	64.699	65.319	0					43	19	3	0	0	0	0.15763	1	16214	16214		29.841	9.387	1	761170			478	4558	287	287	520	520					0.08946308748318188
AIFEIVLNR	9	Unmodified	_AIFEIVLNR_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.8314208984375	2	537.818941	1073.62333	0.38867	0.00020903	0.02542	1.3671E-05	0.41409	0.0002227	537.8190890735327	64.847	0.42065	64.94	64.773	65.194	0.09288					38	15	3	0	0	0	0.14786	1	16179	16179		31.268	4.3847	1	692520			479	4558	287	287	521	521					0.08946308748318188
AIFEVNTDLQK	11	Unmodified	_AIFEVNTDLQK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	639.3978271484375	2	639.340435	1276.66632	0.40722	0.00026035	-0.072889	-4.6601E-05	0.33433	0.00021375	639.3403793302332	52.477	0.39292	52.477	52.324	52.717	0					23	13	2	0	0	0	8.2744E-06	1	12321	12321		176.41	147.91	1	525250			480	1049	288	288	522	522					0.03905034015087949
AIFEVNTDLQK	11	Unmodified	_AIFEVNTDLQK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	639.3417358398438	2	639.340435	1276.66632	0.5869	0.00037523	0.24999	0.00015983	0.83688	0.00053505	639.3404714554795	52.453	0.51251	52.503	52.309	52.822	0.050575					34	18	3	0	0	0	3.948E-18	1	12309	12309		188.38	136.96	1	580300			481	1049	288	288	523	523					0.03905034015087949
AIFEVNTDLQK	11	Unmodified	_AIFEVNTDLQK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	639.3403930664062	2	639.340435	1276.66632	0.43306	0.00027687	-0.48674	-0.00031119	-0.053679	-3.4319E-05	639.3400036938375	52.528	0.48706	52.527	52.358	52.846	-0.00080872					30	17	2	0	0	0	1.3273E-08	1	12358	12358		139.32	95.549	1	562140			482	1049	288	288	524	524					0.03905034015087949
AIFLIFSIF	9	Unmodified	_AIFLIFSIF_					0	0	0		ENSG00000176410|ENST00000395176|DNAJC30	ENSG00000176410|ENST00000395176|DNAJC30	ENSG00000176410|ENST00000395176|DNAJC30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.818115234375	2	535.817879	1069.6212	0.55908	0.00029957	0.47357	0.00025375	1.0327	0.00055332	535.8179216469548	88.95	0.77422	88.949	88.64	89.415	-0.00080872					73	33	3	0	0	0	0.30623	1	23563	23563		7.9102	2.6795	1	656270			483	6928	289	289	525	525					0.08917880010494628
AIFLPQPPK	9	Unmodified	_AIFLPQPPK_					0	0	0		ENST00000399541.6_1_17:6888782-6915571:-|nuORF	ENST00000399541.6_1_17:6888782-6915571:-|nuORF	ENST00000399541.6_1_17:6888782-6915571:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2841796875	2	505.805303	1009.59605	0.34564	0.00017483	-0.43015	-0.00021757	-0.084505	-4.2743E-05	505.8052443383005	51.79	1.0421	51.79	51.108	52.151	0					60	38	2	0	0	0	0.1524	1	12170	12170		32.305	13.049	1	572170			484	10178	290	290	526	526					0.0916382520794059
AIFLPQPPK	9	Unmodified	_AIFLPQPPK_					0	0	0		ENST00000399541.6_1_17:6888782-6915571:-|nuORF	ENST00000399541.6_1_17:6888782-6915571:-|nuORF	ENST00000399541.6_1_17:6888782-6915571:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2843017578125	2	505.805303	1009.59605	0.31006	0.00015683	-0.31486	-0.00015926	-0.0048027	-2.4292E-06	505.80529058387	51.691	0.86828	51.738	51.271	52.14	0.046574					52	31	2	0	0	0	0.1524	1	12157	12157		32.305	13.049	1	688220			485	10178	290	290	527	527					0.0916382520794059
AIFLPQPPK	9	Unmodified	_AIFLPQPPK_					0	0	0		ENST00000399541.6_1_17:6888782-6915571:-|nuORF	ENST00000399541.6_1_17:6888782-6915571:-|nuORF	ENST00000399541.6_1_17:6888782-6915571:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2793884277344	2	505.805303	1009.59605	0.19816	0.00010023	-0.083944	-4.2459E-05	0.11421	5.7769E-05	505.80534880978666	51.73	1.059	51.739	51.169	52.228	0.0095673					53	39	2	0	0	0	0.1524	1	12060	12060		32.305	13.049	1	556220			486	10178	290	290	528	528					0.0916382520794059
AIFPRAFPK	9	Unmodified	_AIFPRAFPK_					0	0	0		ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.3193969726562	2	523.810919	1045.60729	0.56105	0.00029388	-1.1117	-0.00058232	-0.55064	-0.00028843	523.8105281608717	43.465	0.67554	43.549	43.268	43.944	0.083996					31	24	2	0	0	0	0.090484	1	9511	9511		37.974	17.103	1	929510			487	4107	291	291	529	529					0.08630647302061334
AIGISRFR	8	Unmodified	_AIGISRFR_					0	0	0		nc|ENSG00000170500|Q1L5Z9-2|LONRF2;ENSG00000170500|ENST00000393437|LONRF2	nc|ENSG00000170500|Q1L5Z9-2|LONRF2	nc|ENSG00000170500|Q1L5Z9-2|LONRF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.265869140625	2	460.277244	918.539935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.535	1	42.62	42.12	43.12	0.085197								0	0	0	0.30483	1	9264	9264		28.173	5.7206	1				488	6457	292	292	530	530					0.07740617091133117
AIGPEKYGTKV	11	Unmodified	_AIGPEKYGTKV_					0	0	0			REV__ENSG00000187122|ENST00000266058|SLIT1	REV__ENSG00000187122|ENST00000266058|SLIT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3167114257812	2	581.826963	1161.63937	0.3695	0.00021498	0.24374	0.00014181	0.61324	0.0003568	581.8268514897486	56.814	0.79425	56.892	56.603	57.397	0.078674					75	29	4	0	0	0	0.3429	1	13617	13617		18.373	1.2602	1	1917200	+		489	18491	293	293	531	531					0.06501970194540263
AIGTKDLFK	9	Unmodified	_AIGTKDLFK_					0	0	0			REV__ENST00000379480.8_1_13:41834886-41835027:-|nuORF	REV__ENST00000379480.8_1_13:41834886-41835027:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.228759765625	2	496.792392	991.570232	0.96066	0.00047725	-1.1309	-0.00056181	-0.17022	-8.4563E-05	496.7918529559662	33.885	0.47827	33.951	33.786	34.264	0.06636					29	16	2	0	0	0	0.23749	1	6582	6582		7.1017	0	1	284510	+		490	20534	294	294	532	532					0.07410930965670559
AIIAILTPK	9	Unmodified	_AIIAILTPK_					0	0	0		ENST00000437982.1_1_2:130970445-130970847:-|nuORF;ENST00000489471.5_3_2:46787807-46808219:+|nuORF;ENSG00000119729|ENST00000238738|RHOQ;ENST00000557531.1_1_14:50067143-50067293:+|nuORF	ENST00000437982.1_1_2:130970445-130970847:-|nuORF	ENST00000437982.1_1_2:130970445-130970847:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2975158691406	2	470.315503	938.616454	0.85978	0.00040437	-1.1894	-0.00055938	-0.32959	-0.00015501	470.31468514863315	56.299	0.68108	56.28	55.991	56.672	-0.019081					40	24	2	0	0	0	0.066761	1	13546	13546		65.235	15.566	1	1432200			491	2903	295	295	533	533					0.14468995867741796
AIIAILTPK	9	Unmodified	_AIIAILTPK_					0	0	0		ENST00000437982.1_1_2:130970445-130970847:-|nuORF;ENST00000489471.5_3_2:46787807-46808219:+|nuORF;ENSG00000119729|ENST00000238738|RHOQ;ENST00000557531.1_1_14:50067143-50067293:+|nuORF	ENST00000437982.1_1_2:130970445-130970847:-|nuORF	ENST00000437982.1_1_2:130970445-130970847:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	470.315503	938.616454	0.45813	0.00021546	-1.5665	-0.00073673	-1.1083	-0.00052126	470.31456864426167	56.366	0.74983	56.366	56.049	56.799	0	0.020984	-3.8808E-05	NaN	56.177	46	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	777860			492	2903	295	295							0.14468995867741796
AIIAILTPK	9	Unmodified	_AIIAILTPK_					0	0	0		ENST00000437982.1_1_2:130970445-130970847:-|nuORF;ENST00000489471.5_3_2:46787807-46808219:+|nuORF;ENSG00000119729|ENST00000238738|RHOQ;ENST00000557531.1_1_14:50067143-50067293:+|nuORF	ENST00000437982.1_1_2:130970445-130970847:-|nuORF	ENST00000437982.1_1_2:130970445-130970847:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	470.315503	938.616454	0.62148	0.00029229	-1.7775	-0.00083598	-1.156	-0.00054369	470.3144938730545	56.311	0.63252	56.389	56.146	56.778	0.078674	0.044329	-0.00023732	NaN	56.177	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	886560			493	2903	295	295							0.14468995867741796
AIIDEQPLIFK	11	Unmodified	_AIIDEQPLIFK_					0	0	0		ENST00000422797.5_1_2:109288812-109289630:+|nuORF;nc|ENSG00000256977|P0CW19-2|LIMS3;LIMS1|p.N268Kfs*2|1|0.2|ENSG00000169756|chr2:108680708-108680709|-/A|frameshift_variant;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059-3|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	ENST00000422797.5_1_2:109288812-109289630:+|nuORF	ENST00000422797.5_1_2:109288812-109289630:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	643.2686767578125	2	643.871371	1285.72819	0.60613	0.00039027	-0.083523	-5.3778E-05	0.52261	0.00033649	643.8713834427488	64.331	0.5636	64.423	64.234	64.798	0.09288					25	20	2	0	0	0	0.32423	1	15956	15956		14.218	8.9213	1	154310			494	6383	296	296	534	534					0.09675385434206873
AIIDHIFASK	10	Unmodified	_AIIDHIFASK_					0	0	0		ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;nc|ENSG00000152332|Q8TAS1-2|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8163452148438	2	557.816399	1113.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.863	1	47.863	47.363	48.363	0								0	0	0	1.6996E-05	1	10904	10904		101.54	43.821	1				495	5015	297	297	535	535					0.06598004885699993
AIIDHIFASK	10	Unmodified	_AIIDHIFASK_					0	0	0		ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;nc|ENSG00000152332|Q8TAS1-2|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.81640625	2	557.816399	1113.61824	0.65151	0.00036342	-0.25389	-0.00014162	0.39762	0.0002218	557.816082324209	47.769	0.53805	47.816	47.456	47.994	0.047523					54	19	4	0	0	0	0.00015406	1	10878	10878		132.13	72.061	1	2947200			496	5015	297	297	536	536					0.06598004885699993
AIIDHIFASK	10	Unmodified	_AIIDHIFASK_					0	0	0		ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;nc|ENSG00000152332|Q8TAS1-2|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.816162109375	2	557.816399	1113.61824	0.50301	0.00028059	-0.022386	-1.2487E-05	0.48063	0.0002681	557.8162420283084	47.747	0.53059	47.79	47.48	48.011	0.04332					55	19	4	0	0	0	0.0017096	1	10870	10870		111.31	53.587	1	3219400			497	5015	297	297	537	537					0.06598004885699993
AIIDTVINY	9	Unmodified	_AIIDTVINY_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.7497253417969	2	511.281857	1020.54916	0.33787	0.00017274	-0.085953	-4.3946E-05	0.25191	0.0001288	511.2817606600162	70.826	0.47543	70.826	70.54	71.015	0					28	16	2	0	0	0	0.059216	1	17964	17964		69.105	31.131	1	504630			498	1156	298	298	538	538					0.039709208661292905
AIIDTVINY	9	Unmodified	_AIIDTVINY_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.7496337890625	2	511.281857	1020.54916	0.27454	0.00014037	0.68759	0.00035155	0.96213	0.00049192	511.28188757318907	70.772	0.54326	70.833	70.574	71.117	0.060783					38	19	3	0	0	0	0.016005	1	17947	17947		85.642	28.17	1	503540			499	1156	298	298	539	539					0.039709208661292905
AIIDTVINY	9	Unmodified	_AIIDTVINY_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.75018310546875	2	511.281857	1020.54916	0.32228	0.00016478	-2.7603	-0.0014113	-2.438	-0.0012465	511.28163246432484	70.841	0.83153	70.816	70.245	71.077	-0.024872					79	29	4	0	0	0	0.059216	1	18003	18003		51.63	3.284	1	381010			500	1156	298	298	540	540					0.039709208661292905
AIIRYFPV	8	Unmodified	_AIIRYFPV_					0	0	0		nc|ENSG00000170899|O15217-2|GSTA4;ENSG00000170899|ENST00000370963|GSTA4	nc|ENSG00000170899|O15217-2|GSTA4	nc|ENSG00000170899|O15217-2|GSTA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.26904296875	2	489.792195	977.569838	0.31215	0.00015289	-0.67239	-0.00032933	-0.36024	-0.00017644	489.79185273991874	67.59	0.22202	67.59	67.425	67.647	0					11	7	2	0	0	0	0.34147	1	16961	16961		11.114	0.93107	1	96304			501	6492	299	299	541	541					0.08015556036457383
AIISVTKSK	9	Unmodified	_AIISVTKSK_					0	0	0		ENSG00000105171|ENST00000585603|POP4	ENSG00000105171|ENST00000585603|POP4	ENSG00000105171|ENST00000585603|POP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.79998779296875	2	473.800217	945.585882	0.22119	0.0001048	-0.76013	-0.00036015	-0.53894	-0.00025535	473.7998569141798	21.14	0.54665	21.14	20.912	21.459	0					39	18	3	0	0	0	0.29638	1	2788	2788		9.3831	0	1	97646			502	1950	300	300	542	542					0.11091217482703541
AIISVTKSK	9	Unmodified	_AIISVTKSK_					0	0	0		ENSG00000105171|ENST00000585603|POP4	ENSG00000105171|ENST00000585603|POP4	ENSG00000105171|ENST00000585603|POP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7997131347656	2	473.800217	945.585882	0.41758	0.00019785	-0.97055	-0.00045985	-0.55297	-0.000262	473.7998435791114	21.316	0.45449	21.206	21.034	21.488	-0.11003					37	15	3	0	0	0	0.26612	1	2825	2825		13.906	0	1	125250			503	1950	300	300	543	543					0.11091217482703541
AIITPPPAK	9	Unmodified	_AIITPPPAK_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2841491699219	2	454.284203	906.553853	0.37138	0.00016871	-0.12855	-5.8399E-05	0.24283	0.00011031	454.2840524634715	32.438	1.4887	32.438	31.745	33.233	0					109	52	3	0	0	0	0.016723	3	6151	6100;6151;6199		69.105	16.837	1	836820			504	2520	301	301	544;545;546	545					0.0968384979955772
AIITPPPAK	9	Unmodified	_AIITPPPAK_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2842102050781	2	454.284203	906.553853	0.45562	0.00020698	-0.17313	-7.8652E-05	0.28248	0.00012833	454.2840264526448	32.312	1.1074	32.367	31.895	33.002	0.055309					103	39	4	0	0	0	0.019245	3	6137	6087;6137;6182		65.235	10.461	1	864000			505	2520	301	301	547;548;549	548					0.0968384979955772
AIITPPPAK	9	Unmodified	_AIITPPPAK_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2841491699219	2	454.284203	906.553853	0.18746	8.5158E-05	0.07532	3.4217E-05	0.26278	0.00011938	454.28414126632174	32.346	1.3578	32.401	31.735	33.093	0.054371					110	48	4	0	0	0	0.041175	3	6118	6071;6118;6166		56.177	10.156	1	975350			506	2520	301	301	550;551;552	551					0.0968384979955772
AILDKTTNK	9	Unmodified	_AILDKTTNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1	ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000153250|P29558-2|RBMS1	nc|ENSG00000153250|P29558-2|RBMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.29278564453125	2	502.292756	1002.57096	0.14314	7.1898E-05	0.0084341	4.2364E-06	0.15157	7.6134E-05	502.2926846749619	15.962	0.77087	15.962	15.413	16.184	0					73	26	4	0	0	0	0.0035713	1	1195	1195		97.741	49.992	1	411140			507	5070;1057	302	302	553	553					0.06977725614717656
AILDKTTNK	9	Unmodified	_AILDKTTNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1	ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000153250|P29558-2|RBMS1	nc|ENSG00000153250|P29558-2|RBMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2928466796875	2	502.292756	1002.57096	0.12607	6.3322E-05	-0.0085509	-4.2951E-06	0.11752	5.9027E-05	502.29271294618667	16.064	0.73307	15.949	15.486	16.219	-0.11434					63	24	3	0	0	0	0.015924	1	1244	1244		70.332	30.375	1	464050			508	5070;1057	302	302	554	554					0.06977725614717656
AILDKTTNK	9	Unmodified	_AILDKTTNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1	ENSG00000076067|ENST00000262031|RBMS2;nc|ENSG00000153250|P29558-2|RBMS1	nc|ENSG00000153250|P29558-2|RBMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2928161621094	2	502.292756	1002.57096	0.16252	8.1631E-05	0.011573	5.8129E-06	0.17409	8.7444E-05	502.29266893273234	16.012	0.74621	15.95	15.459	16.205	-0.062534					61	25	5	0	0	0	0.010888	2	1181	1181;1232		78.06	36.105	1	462570			509	5070;1057	302	302	555;556	555					0.06977725614717656
AILDYLITK	9	Unmodified	_AILDYLITK_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3156127929688	2	525.3157	1048.61685	0.74109	0.0003893	-0.60281	-0.00031667	0.13828	7.2639E-05	525.3153225042166	65.766	1.1036	65.766	65.293	66.396	0					110	39	4	0	0	0	0.00051734	3	16412	16370;16412;16454		128.93	53.172	1	5378800			510	1623	303	303	557;558;559	558					0.09448370796917516
AILDYLITK	9	Unmodified	_AILDYLITK_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3156127929688	2	525.3157	1048.61685	0.48154	0.00025296	-0.41378	-0.00021737	0.067754	3.5592E-05	525.3153818556268	65.596	1.3887	65.685	65.216	66.605	0.088882					127	50	4	0	0	0	0.00010125	3	16365	16325;16365;16409		140.63	64.872	1	6115100			511	1623	303	303	560;561;562	561					0.09448370796917516
AILDYLITK	9	Unmodified	_AILDYLITK_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.315673828125	2	525.3157	1048.61685	0.66269	0.00034812	-0.45721	-0.00024018	0.20548	0.00010794	525.3153828271098	65.7	1.3725	65.689	65.201	66.574	-0.011337					127	49	5	0	0	0	0.00051734	3	16400	16357;16400;16451		128.93	62.476	1	5455600			512	1623	303	303	563;564;565	564					0.09448370796917516
AILHLLVSL	9	Unmodified	_AILHLLVSL_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.8208312988281	2	489.820953	977.627353	0.31076	0.00015222	-0.31671	-0.00015513	-0.0059496	-2.9142E-06	489.8207107533663	49.941	0.56664	49.941	49.65	50.217	0					40	20	2	0	0	0	0.20344	1	11573	11573		23.148	0	1	669400			513	7767	304	304	566	566					0.1376439824202862
AILLPQPPK	9	Unmodified	_AILLPQPPK_					0	0	0		ENST00000452360.6_1_4:942397-950358:+|nuORF;ENST00000437681.1_1_1:28835797-28835884:+|nuORF;chr14:73870756-73874023|183|11.66|0.0|20.15|+|0|TE_info:AluJr,AluJr_dup62092,Alu,SINE,donor,-,73870655,73870756|None,PTGR2|1;ENST00000608290.1_1_22:46409584-46410459:+|nuORF;ENST00000567741.1_1_1:25644693-25663698:-|nuORF;ENST00000518164.5_1_8:99037863-99057595:-|nuORF;ENST00000591166.1_1_17:42259005-42263988:-|nuORF;ENST00000585457.5_1_17:42259005-42264009:-|nuORF;nc|ENSG00000204370|O14521-4|SDHD;nc|ENSG00000137090|Q9Y5R6-3|DMRT1;ENST00000496007.5_1_1:1324344-1326370:-|nuORF;nc|ENSG00000132256|Q9C035-4|TRIM5;ENST00000483835.5_1_11:5685320-5686489:-|nuORF	ENST00000452360.6_1_4:942397-950358:+|nuORF;ENST00000483835.5_1_11:5685320-5686489:-|nuORF	ENST00000452360.6_1_4:942397-950358:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.8133239746094	2	488.813128	975.611703	0.50034	0.00024457	0.020112	9.831E-06	0.52046	0.00025441	488.8130400113518	48.371	2.9119	48.371	46.789	49.701	0					226	104	4	0	0	0	0.014888	5	11019	10969;11019;11064;11110;11211		71.922	6.5839	1	4490000			514	10656;11068	305	305	567;568;569;570;571	568					0.12292111724991628
AILLPQPPK	9	Unmodified	_AILLPQPPK_					0	0	0		ENST00000452360.6_1_4:942397-950358:+|nuORF;ENST00000437681.1_1_1:28835797-28835884:+|nuORF;chr14:73870756-73874023|183|11.66|0.0|20.15|+|0|TE_info:AluJr,AluJr_dup62092,Alu,SINE,donor,-,73870655,73870756|None,PTGR2|1;ENST00000608290.1_1_22:46409584-46410459:+|nuORF;ENST00000567741.1_1_1:25644693-25663698:-|nuORF;ENST00000518164.5_1_8:99037863-99057595:-|nuORF;ENST00000591166.1_1_17:42259005-42263988:-|nuORF;ENST00000585457.5_1_17:42259005-42264009:-|nuORF;nc|ENSG00000204370|O14521-4|SDHD;nc|ENSG00000137090|Q9Y5R6-3|DMRT1;ENST00000496007.5_1_1:1324344-1326370:-|nuORF;nc|ENSG00000132256|Q9C035-4|TRIM5;ENST00000483835.5_1_11:5685320-5686489:-|nuORF	ENST00000452360.6_1_4:942397-950358:+|nuORF;ENST00000483835.5_1_11:5685320-5686489:-|nuORF	ENST00000452360.6_1_4:942397-950358:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.8133544921875	2	488.813128	975.611703	0.6399	0.00031279	-0.17437	-8.5235E-05	0.46553	0.00022756	488.8129699611609	48.356	2.2126	48.403	46.95	49.163	0.04752					194	81	4	0	0	0	0.012929	7	10979	10745;10979;11027;11075;11125;11169;11221		74.929	6.7232	1	4507400			515	10656;11068	305	305	572;573;574;575;576;577;578	573					0.12292111724991628
AILLPQPPK	9	Unmodified	_AILLPQPPK_					0	0	0		ENST00000452360.6_1_4:942397-950358:+|nuORF;ENST00000437681.1_1_1:28835797-28835884:+|nuORF;chr14:73870756-73874023|183|11.66|0.0|20.15|+|0|TE_info:AluJr,AluJr_dup62092,Alu,SINE,donor,-,73870655,73870756|None,PTGR2|1;ENST00000608290.1_1_22:46409584-46410459:+|nuORF;ENST00000567741.1_1_1:25644693-25663698:-|nuORF;ENST00000518164.5_1_8:99037863-99057595:-|nuORF;ENST00000591166.1_1_17:42259005-42263988:-|nuORF;ENST00000585457.5_1_17:42259005-42264009:-|nuORF;nc|ENSG00000204370|O14521-4|SDHD;nc|ENSG00000137090|Q9Y5R6-3|DMRT1;ENST00000496007.5_1_1:1324344-1326370:-|nuORF;nc|ENSG00000132256|Q9C035-4|TRIM5;ENST00000483835.5_1_11:5685320-5686489:-|nuORF	ENST00000452360.6_1_4:942397-950358:+|nuORF;ENST00000483835.5_1_11:5685320-5686489:-|nuORF	ENST00000452360.6_1_4:942397-950358:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.8132629394531	2	488.813128	975.611703	0.5184	0.0002534	-0.018236	-8.9139E-06	0.50016	0.00024449	488.81305233423404	48.36	2.2938	48.403	46.866	49.16	0.04332					216	84	4	0	0	0	0.012929	7	11038	10777;10992;11038;11079;11133;11185;11235		74.929	6.0747	1	4324200			516	10656;11068	305	305	579;580;581;582;583;584;585	581					0.12292111724991628
AILNYIASK	9	Unmodified	_AILNYIASK_					0	0	0		ENSG00000174156|ENST00000211122|GSTA3;ENSG00000243955|ENST00000334575|GSTA1;ENSG00000244067|ENST00000493422|GSTA2;ENSG00000182793|ENST00000370989|GSTA5	ENSG00000174156|ENST00000211122|GSTA3;ENSG00000243955|ENST00000334575|GSTA1	ENSG00000243955|ENST00000334575|GSTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.79241943359375	2	496.792392	991.570232	0.49017	0.00024351	0.034942	1.7359E-05	0.52512	0.00026087	496.7923236859826	46.676	0.87195	46.676	46.43	47.302	0					67	30	4	0	0	0	0.00024732	2	10552	10552;10607		132.38	65.923	1	3080200			517	8563;6775	306	306	586;587	586					0.07410930965670559
AILNYIASK	9	Unmodified	_AILNYIASK_					0	0	0		ENSG00000174156|ENST00000211122|GSTA3;ENSG00000243955|ENST00000334575|GSTA1;ENSG00000244067|ENST00000493422|GSTA2;ENSG00000182793|ENST00000370989|GSTA5	ENSG00000174156|ENST00000211122|GSTA3;ENSG00000243955|ENST00000334575|GSTA1	ENSG00000243955|ENST00000334575|GSTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.79241943359375	2	496.792392	991.570232	0.56607	0.00028122	-0.2216	-0.00011009	0.34447	0.00017113	496.7922323246205	46.557	0.91278	46.61	46.358	47.271	0.052574					83	33	4	0	0	0	8.0996E-05	2	10501	10501;10545		143.91	68.148	1	3454100			518	8563;6775	306	306	588;589	588					0.07410930965670559
AILNYIASK	9	Unmodified	_AILNYIASK_					0	0	0		ENSG00000174156|ENST00000211122|GSTA3;ENSG00000243955|ENST00000334575|GSTA1;ENSG00000244067|ENST00000493422|GSTA2;ENSG00000182793|ENST00000370989|GSTA5	ENSG00000174156|ENST00000211122|GSTA3;ENSG00000243955|ENST00000334575|GSTA1	ENSG00000243955|ENST00000334575|GSTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7924499511719	2	496.792392	991.570232	0.32472	0.00016132	0.11565	5.7453E-05	0.44036	0.00021877	496.7923181363429	46.604	0.84169	46.659	46.383	47.225	0.054371					67	29	4	0	0	0	0.0011116	2	10509	10509;10569		121.35	63.624	1	3629400			519	8563;6775	306	306	590;591	590					0.07410930965670559
AILTGGFATF	10	Unmodified	_AILTGGFATF_					0	0	0		ENSG00000184545|ENST00000397374|DUSP8;ENST00000422884.1_1_10:75491660-75492464:+|nuORF	ENSG00000184545|ENST00000397374|DUSP8	ENSG00000184545|ENST00000397374|DUSP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2714538574219	2	499.271293	996.528032	0.75777	0.00037833	0.74928	0.0003741	1.5071	0.00075243	499.2713194367433	48.179	0.72408	48.226	47.968	48.693	0.04752					89	26	5	0	0	0	0.10934	2	11047	10995;11047		46.021	6.0636	1	2412800			520	7460	307	307	592;593	593					0.02962955557291025
AILTGGFATF	10	Unmodified	_AILTGGFATF_					0	0	0		ENSG00000184545|ENST00000397374|DUSP8;ENST00000422884.1_1_10:75491660-75492464:+|nuORF	ENSG00000184545|ENST00000397374|DUSP8	ENSG00000184545|ENST00000397374|DUSP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2718505859375	2	499.271293	996.528032	0.57866	0.00028891	0.69076	0.00034488	1.2694	0.00063379	499.2713684484769	48.131	0.71667	48.174	47.926	48.643	0.04332					75	26	5	0	0	0	0.16984	1	10971	10971		46.021	0	1	2950500			521	7460	307	307	594	594					0.02962955557291025
AILVKMGLF	9	Unmodified	_AILVKMGLF_					0	0	0			REV__ENST00000542902.5_2_12:118796881-118796944:-|nuORF	REV__ENST00000542902.5_2_12:118796881-118796944:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.30364990234375	2	496.304081	990.59361	0.49459	0.00024547	-0.57538	-0.00028556	-0.080785	-4.0094E-05	496.3037124227817	75.276	2.0084	75.245	74.951	76.96	-0.031487					157	74	3	0	0	0	0.32415	1	19313	19313		5.2307	5.2307	1	2632000	+		522	22141	308	308	595	595					0.09793653478629949
AIMDPLPLRTK	11	Oxidation (M)	_AIM(Oxidation (M))DPLPLRTK_		AIM(1)DPLPLRTK		AIM(61)DPLPLRTK	0	0	1		ENSG00000106546|ENST00000242057|AHR;AHR|p.Q667Pfs*7|1|0.3|ENSG00000106546|chr7:17339823-17339824|-/C|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2441711425781	3	424.244441	1269.71149	-0.11091	-4.7051E-05	0.28033	0.00011893	0.16942	7.1875E-05	424.2445516300913	41.596	1.2115	41.596	41.039	42.251	0					92	48	2	0	0	0	0.0226	2	8949	8949;9011		61.165	52.72	1	5765800			523	2082	309	309	596;597	596		258			0.08742561276585548
AIMDPLPLRTK	11	Oxidation (M)	_AIM(Oxidation (M))DPLPLRTK_		AIM(1)DPLPLRTK		AIM(63)DPLPLRTK	0	0	1		ENSG00000106546|ENST00000242057|AHR;AHR|p.Q667Pfs*7|1|0.3|ENSG00000106546|chr7:17339823-17339824|-/C|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	635.863037109375	2	635.863023	1269.71149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.654	1	41.654	41.154	42.154	0								0	0	0	0.030819	1	8996	8996		62.78	51.981	1				524	2082	309	309	598	598		258			0.08742561276585548
AIMDPLPLRTK	11	Oxidation (M)	_AIM(Oxidation (M))DPLPLRTK_		AIM(1)DPLPLRTK		AIM(59)DPLPLRTK	0	0	1		ENSG00000106546|ENST00000242057|AHR;AHR|p.Q667Pfs*7|1|0.3|ENSG00000106546|chr7:17339823-17339824|-/C|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	635.8634033203125	2	635.863023	1269.71149	0.4088	0.00025994	-0.31514	-0.00020039	0.093652	5.955E-05	636.36426911058	41.476	0.36815	41.566	41.243	41.611	0.090248					21	13	2	0	0	0	0.029474	1	8929	8929		59.177	52.075	1	1441300			525	2082	309	309	599	599		258			0.08742561276585548
AIMDPLPLRTK	11	Oxidation (M)	_AIM(Oxidation (M))DPLPLRTK_		AIM(1)DPLPLRTK		AIM(74)DPLPLRTK	0	0	1		ENSG00000106546|ENST00000242057|AHR;AHR|p.Q667Pfs*7|1|0.3|ENSG00000106546|chr7:17339823-17339824|-/C|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.2443542480469	3	424.244441	1269.71149	-0.15865	-6.7308E-05	0.34884	0.00014799	0.19019	8.0687E-05	424.2446401175307	41.505	0.93253	41.595	41.135	42.068	0.090248					95	38	3	0	0	0	0.0079184	2	8933	8933;8976		74.077	55.356	1	5559900			526	2082	309	309	600;601	600		258			0.08742561276585548
AIMDPLPLRTK	11	Oxidation (M)	_AIM(Oxidation (M))DPLPLRTK_		AIM(1)DPLPLRTK		AIM(56)DPLPLRTK	0	0	1		ENSG00000106546|ENST00000242057|AHR;AHR|p.Q667Pfs*7|1|0.3|ENSG00000106546|chr7:17339823-17339824|-/C|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.24444580078125	3	424.244441	1269.71149	0.15282	6.4833E-05	-0.054758	-2.3231E-05	0.098062	4.1602E-05	424.5787227938475	41.417	1.0897	41.514	41.04	42.13	0.096622					109	42	3	0	0	0	0.039328	2	8902	8902;8946		56.328	44.507	1	7252700			527	2082	309	309	602;603	602		258			0.08742561276585548
AIMDPLPLRTK	11	Oxidation (M)	_AIM(Oxidation (M))DPLPLRTK_		AIM(1)DPLPLRTK		AIM(67)DPLPLRTK	0	0	1		ENSG00000106546|ENST00000242057|AHR;AHR|p.Q667Pfs*7|1|0.3|ENSG00000106546|chr7:17339823-17339824|-/C|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	635.8627319335938	2	635.863023	1269.71149	0.66366	0.00042199	-0.74237	-0.00047204	-0.078712	-5.005E-05	635.862452949693	41.445	0.4037	41.541	41.177	41.581	0.096622					27	14	3	0	0	0	0.011413	1	8909	8909		66.683	55.188	1	1949900			528	2082	309	309	604	604		258			0.08742561276585548
AIMGFILAH	9	Oxidation (M)	_AIM(Oxidation (M))GFILAH_		AIM(1)GFILAH		AIM(150)GFILAH	0	0	1		ENSG00000069535|ENST00000378069|MAOB;nc|ENSG00000069535|P27338-2|MAOB	ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.76812744140625	2	494.767863	987.521173	0.68789	0.00034035	-0.36795	-0.00018205	0.31994	0.0001583	494.76772594022196	54.393	1.6544	54.393	53.884	55.539	0					134	60	4	0	0	0	5.9846E-05	4	12865	12865;12913;12959;13009		147.33	105.51	1	13453000			529	908	310	310	605;606;607;608	605		115			0.026913194050735
AIMGFILAH	9	Oxidation (M)	_AIM(Oxidation (M))GFILAH_		AIM(1)GFILAH		AIM(150)GFILAH	0	0	1		ENSG00000069535|ENST00000378069|MAOB;nc|ENSG00000069535|P27338-2|MAOB	ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7681579589844	2	494.767863	987.521173	0.65554	0.00032434	-0.17082	-8.4514E-05	0.48472	0.00023983	494.76774048296704	54.342	1.7834	54.405	53.801	55.584	0.063206					180	66	4	0	0	0	5.9846E-05	5	12847	12847;12896;12946;12995;13083		147.33	105.51	1	13482000			530	908	310	310	609;610;611;612;613	609		115			0.026913194050735
AIMGFILAH	9	Oxidation (M)	_AIM(Oxidation (M))GFILAH_		AIM(1)GFILAH		AIM(150)GFILAH	0	0	1		ENSG00000069535|ENST00000378069|MAOB;nc|ENSG00000069535|P27338-2|MAOB	ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.76806640625	2	494.767863	987.521173	0.58671	0.00029029	-0.081557	-4.0352E-05	0.50516	0.00024993	494.7678233806486	54.491	1.6462	54.475	53.893	55.539	-0.015919					158	59	4	0	0	0	5.9846E-05	4	12877	12877;12925;12973;13024		147.33	105.51	1	14287000			531	908	310	310	614;615;616;617	614		115			0.026913194050735
AINKVDLLA	9	Unmodified	_AINKVDLLA_					0	0	0			REV__nc|ENSG00000094631|Q9UBN7-2|HDAC6	REV__nc|ENSG00000094631|Q9UBN7-2|HDAC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.74920654296875	2	478.792392	955.570232	0.21549	0.00010318	-0.39176	-0.00018757	-0.17626	-8.4394E-05	478.7920819845382	44.277	0.62021	44.277	44.013	44.633	0					35	22	2	0	0	0	0.22061	1	9735	9735		13.042	3.6593	1	496800	+		532	14090	311	311	618	618					0.09066930965650499
AINPKLLQL	9	Unmodified	_AINPKLLQL_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.32415771484375	2	505.32386	1008.63317	0.2967	0.00014993	-0.044198	-2.2334E-05	0.2525	0.0001276	505.3239906375544	57.923	1.6082	57.923	57.525	59.133	0					165	56	5	0	0	0	0.0033114	5	14003	13955;14003;14045;14089;14141		99.799	41.337	1	19888000			533	2205	312	312	619;620;621;622;623	620					0.12919496753715976
AINPKLLQL	9	Unmodified	_AINPKLLQL_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.3241882324219	2	505.32386	1008.63317	0.33062	0.00016707	-0.11721	-5.9227E-05	0.21342	0.00010785	505.32395071623944	57.75	1.4577	57.835	57.465	58.922	0.085621					167	52	5	0	0	0	0.00094673	5	13943	13901;13943;13993;14038;14090		123.45	38.032	1	20023000			534	2205	312	312	624;625;626;627;628	625					0.12919496753715976
AINPKLLQL	9	Unmodified	_AINPKLLQL_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.32421875	2	505.32386	1008.63317	0.39843	0.00020133	-0.026396	-1.3338E-05	0.37203	0.000188	505.3239611169861	57.966	1.4482	57.949	57.606	59.055	-0.0172					96	52	2	0	0	0	0.004681	5	14009	13963;14009;14058;14109;14161		88.954	36.686	1	20948000			535	2205	312	312	629;630;631;632;633	630					0.12919496753715976
AINPKLMQL	9	Oxidation (M)	_AINPKLM(Oxidation (M))QL_		AINPKLM(1)QL		AINPKLM(78)QL	0	0	1		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38881942-38884127:-|nuORF;ENST00000431312.2_1_22:38881942-38884127:-|nuORF	nc|ENSG00000100201|Q92841-1|DDX17	nc|ENSG00000100201|Q92841-1|DDX17	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2999877929688	2	522.299527	1042.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.727	1	41.727	41.227	42.227	0								0	0	0	0.011479	1	9019	9019		78.149	9.0445	1				536	1544	313	313	634	634		191			0.06491260122288622
AINPKLMQL	9	Oxidation (M)	_AINPKLM(Oxidation (M))QL_		AINPKLM(1)QL		AINPKLM(85)QL	0	0	1		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38881942-38884127:-|nuORF;ENST00000431312.2_1_22:38881942-38884127:-|nuORF	nc|ENSG00000100201|Q92841-1|DDX17	nc|ENSG00000100201|Q92841-1|DDX17	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2996826171875	2	522.299527	1042.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.588	1	41.679	41.179	42.179	0.090252								0	0	0	0.0067712	1	8979	8979		85.272	25.198	1				537	1544	313	313	635	635		191			0.06491260122288622
AINPKLMQL	9	Oxidation (M)	_AINPKLM(Oxidation (M))QL_		AINPKLM(1)QL		AINPKLM(82)QL	0	0	1		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38881942-38884127:-|nuORF;ENST00000431312.2_1_22:38881942-38884127:-|nuORF	nc|ENSG00000100201|Q92841-1|DDX17	nc|ENSG00000100201|Q92841-1|DDX17	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2998046875	2	522.299527	1042.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.406	1	41.503	41.003	42.003	0.096626								0	0	0	0.0091895	1	8914	8914		81.613	25.436	1				538	1544	313	313	636	636		191			0.06491260122288622
AINWLPFLNTI	11	Unmodified	_AINWLPFLNTI_					0	0	0		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-2|ECE1	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.57952880859375	3	434.579929	1300.71796	0.16251	7.0621E-05	-1.0418	-0.00045273	-0.87925	-0.00038211	434.57963938926684	54.255	0.47078	54.255	54.026	54.496	0					47	16	4	0	0	0	0.3826	1	12878	12878		13.519	3.7544	1	448580			539	2786	314	314	637	637					0.07962822499644062
AINWLPFLNTI	11	Unmodified	_AINWLPFLNTI_					0	0	0		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-2|ECE1	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	434.579929	1300.71796	0.16251	7.0621E-05	-1.0418	-0.00045273	-0.87925	-0.00038211	434.57963938926684	54.255	0.47078	54.255	54.026	54.496	0	-0.098741	-0.00028759	NaN	13.519	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	448580			540	2786	314	314							0.07962822499644062
AINWLPFLNTI	11	Unmodified	_AINWLPFLNTI_					0	0	0		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-2|ECE1	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	434.579929	1300.71796	0.17178	7.4651E-05	-0.88213	-0.00038336	-0.71036	-0.00030871	434.57980039055343	54.194	0.65607	54.257	53.96	54.616	0.063202	-0.096978	-7.9487E-05	NaN	13.519	57	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	558110			541	2786	314	314							0.07962822499644062
AINWLPFLNTI	11	Unmodified	_AINWLPFLNTI_					0	0	0		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-2|ECE1	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	434.579929	1300.71796	0.17181	7.4665E-05	-0.52862	-0.00022973	-0.35681	-0.00015506	434.57974046896175	54.566	0.51323	54.55	54.282	54.796	-0.015923	0.19572	0.0003814	NaN	13.519	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	610600			542	2786	314	314							0.07962822499644062
AIPARSLEL	9	Unmodified	_AIPARSLEL_					0	0	0		ENSG00000058335|ENST00000558480|RASGRF1	ENSG00000058335|ENST00000558480|RASGRF1	ENSG00000058335|ENST00000558480|RASGRF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.290017	968.565481	0.20393	9.8965E-05	0.30466	0.00014785	0.50859	0.00024681	485.2904449198851	52.167	0.6098	52.167	51.885	52.494	0					48	21	4	0	0	0	0.21447	1	12279	12279		21.537	2.28	1	581060			543	733	315	315	638	638					0.07994046822898326
AIPARSLEL	9	Unmodified	_AIPARSLEL_					0	0	0		ENSG00000058335|ENST00000558480|RASGRF1	ENSG00000058335|ENST00000558480|RASGRF1	ENSG00000058335|ENST00000558480|RASGRF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80035400390625	2	485.290017	968.565481	0.26553	0.00012886	0.58878	0.00028573	0.8543	0.00041458	485.29060735889874	52.121	0.59419	52.171	51.9	52.494	0.050575					39	21	3	0	0	0	0.057976	1	12214	12214		49.933	4.2334	1	611260			544	733	315	315	639	639					0.07994046822898326
AIPFSFIVF	9	Unmodified	_AIPFSFIVF_					0	0	0			REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7947998046875	2	520.794404	1039.57425	0.53517	0.00027871	0.51889	0.00027024	1.0541	0.00054895	520.7945450681021	76.356	3.3211	76.325	75.184	78.505	-0.031487					196	122	3	0	0	0	0.32733	2	19497	19497;19545		4.756	0	1	1007500	+		545	14641	316	316	640;641	640					0.056050204593930175
AIPGLIPDLV	10	Unmodified	_AIPGLIPDLV_					0	0	0		nc|ENSG00000149043|Q8NBV8-1|SYT8;ENST00000479276.5_1_11:1852979-1857331:+|nuORF;ENSG00000149043|ENST00000341958|SYT8	nc|ENSG00000149043|Q8NBV8-1|SYT8	nc|ENSG00000149043|Q8NBV8-1|SYT8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.8445129394531	2	504.310418	1006.60628	0.65117	0.00032839	-0.65695	-0.0003313	-0.0057718	-2.9108E-06	504.3100385484779	74.54	0.45185	74.54	74.343	74.795	0					24	15	2	0	0	0	0.29519	1	19078	19078		21.747	2.4897	1	311440			546	4840	317	317	642	642					0.10324388142521457
AIPRKKRMPW	10	Unmodified	_AIPRKKRMPW_					0	0	0		ENST00000368194.7_1_1:156921476-156926255:-|nuORF	ENST00000368194.7_1_1:156921476-156926255:-|nuORF	ENST00000368194.7_1_1:156921476-156926255:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8828125	2	641.881884	1281.74922	0.3939	0.00025284	0.76873	0.00049343	1.1626	0.00074627	641.8821386228421	94.232	1.0121	94.319	94.111	95.123	0.086678					144	83	2	0	0	0	0.41085	1	25193	25193		1.4819	1.4819	1	155330			547	9755	318	318	643	643					0.11961117052783266
AIPRKKRMPW	10	Unmodified	_AIPRKKRMPW_					0	0	0		ENST00000368194.7_1_1:156921476-156926255:-|nuORF	ENST00000368194.7_1_1:156921476-156926255:-|nuORF	ENST00000368194.7_1_1:156921476-156926255:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8822631835938	2	641.881884	1281.74922	0.33589	0.0002156	1.0458	0.00067127	1.3817	0.00088687	641.882430388857	96.394	0.58043	96.472	96.248	96.828	0.077415					94	58	2	0	0	0	0.41673	1	25754	25754		0.40072	0	1	179320			548	9755	318	318	644	644					0.11961117052783266
AIPRKKRMPW	10	Unmodified	_AIPRKKRMPW_					0	0	0		ENST00000368194.7_1_1:156921476-156926255:-|nuORF	ENST00000368194.7_1_1:156921476-156926255:-|nuORF	ENST00000368194.7_1_1:156921476-156926255:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8600463867188	2	641.881884	1281.74922	0.25657	0.00016469	1.1473	0.00073644	1.4039	0.00090113	641.8822831841964	105.13	0.24506	105.13	104.98	105.23	0.0018463					54	35	2	0	0	0	0.41085	1	27891	27891		1.4819	0.28856	1	97548			549	9755	318	318	645	645					0.11961117052783266
AIPRKKRMPW	10	Unmodified	_AIPRKKRMPW_					0	0	0		ENST00000368194.7_1_1:156921476-156926255:-|nuORF	ENST00000368194.7_1_1:156921476-156926255:-|nuORF	ENST00000368194.7_1_1:156921476-156926255:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8824462890625	2	641.881884	1281.74922	0.42643	0.00027372	1.1816	0.00075845	1.608	0.0010322	642.3843682983776	100.44	0.3175	100.43	100.29	100.61	-0.006897					63	42	2	0	0	0	0.41673	1	26908	26908		0.40072	0.40072	1	117300			550	9755	318	318	646	646					0.11961117052783266
AIPRKKRMPW	10	Unmodified	_AIPRKKRMPW_					0	0	0		ENST00000368194.7_1_1:156921476-156926255:-|nuORF	ENST00000368194.7_1_1:156921476-156926255:-|nuORF	ENST00000368194.7_1_1:156921476-156926255:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	641.881884	1281.74922	-0.017939	-1.1515E-05	1.2776	0.00082007	1.2597	0.00080856	641.882646611397	100.41	0.17715	100.41	100.33	100.5	0	0.061574	0.00013276	NaN	0.40072	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69711			551	9755	318	318							0.11961117052783266
AIPRKKRMPW	10	Unmodified	_AIPRKKRMPW_					0	0	0		ENST00000368194.7_1_1:156921476-156926255:-|nuORF	ENST00000368194.7_1_1:156921476-156926255:-|nuORF	ENST00000368194.7_1_1:156921476-156926255:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	641.881884	1281.74922	0.25624	0.00016448	1.0501	0.00067405	1.3064	0.00083852	641.8824562848381	100.16	0.25273	100.2	100.15	100.4	0.038994	-0.14658	-0.00015929	NaN	0.40072	49	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121640			552	9755	318	318							0.11961117052783266
AIPRQKAL	8	Unmodified	_AIPRQKAL_					0	0	0		ENSG00000109944|ENST00000227349|JHY	ENSG00000109944|ENST00000227349|JHY	ENSG00000109944|ENST00000227349|JHY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.78729248046875	2	448.787444	895.560336	0.23404	0.00010504	-0.04969	-2.23E-05	0.18435	8.2736E-05	448.7873008894177	21.586	0.67853	21.586	21.338	22.017	0					62	24	4	0	0	0	0.28861	2	2864	2864;2912		32.117	6.7177	1	514160			553	2284	319	319	647;648	647					0.10837787750938332
AIPRQKAL	8	Unmodified	_AIPRQKAL_					0	0	0		ENSG00000109944|ENST00000227349|JHY	ENSG00000109944|ENST00000227349|JHY	ENSG00000109944|ENST00000227349|JHY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.787353515625	2	448.787444	895.560336	0.25647	0.0001151	-0.0085309	-3.8286E-06	0.24794	0.00011127	448.7873373543224	21.709	0.5757	21.609	21.392	21.968	-0.10034					54	20	3	0	0	0	0.28861	2	2908	2908;2954		32.117	9.8356	1	554390			554	2284	319	319	649;650	649					0.10837787750938332
AIPRQKAL	8	Unmodified	_AIPRQKAL_					0	0	0		ENSG00000109944|ENST00000227349|JHY	ENSG00000109944|ENST00000227349|JHY	ENSG00000109944|ENST00000227349|JHY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7872314453125	2	448.787444	895.560336	0.20415	9.1618E-05	0.055698	2.4996E-05	0.25984	0.00011661	448.7873387197565	21.657	0.72025	21.608	21.344	22.064	-0.049377					58	25	3	0	0	0	0.2157	1	2894	2894		40.449	0.49126	1	502230			555	2284	319	319	651	651					0.10837787750938332
AIQARKRRPKR	11	Unmodified	_AIQARKRRPKR_					0	0	0		ENST00000460391.5_3_7:104909300-105029331:-|nuORF;ENST00000482862.1_1_7:104909300-105029811:-|nuORF;ENSG00000135250|ENST00000393651|SRPK2	ENST00000460391.5_3_7:104909300-105029331:-|nuORF	ENST00000460391.5_3_7:104909300-105029331:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.26580810546875	3	460.632132	1378.87457	-0.043609	-2.0088E-05	-2.2568	-0.0010395	-2.3004	-0.0010596	460.96554298401236	42.747	0.29842	42.832	42.704	43.003	0.085197					14	10	2	0	0	0	0.33287	1	9320	9320		2.8433	1.5136	1	145270			556	3856	320	320	652	652					0.20028545233321893
AIQNPTMINK	10	Oxidation (M)	_AIQNPTM(Oxidation (M))INK_		AIQNPTM(1)INK		AIQNPTM(59)INK	0	0	1		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.3029174804688	2	573.302798	1144.59104	0.16295	9.3422E-05	0.032706	1.875E-05	0.19566	0.00011217	573.3027939469425	28.77	0.83925	28.77	28.277	29.117	0					73	29	3	0	0	0	0.049822	1	5119	5119		59.052	38.638	1	498920			557	6156	321	321	653	653		721			0.024531532830224023
AIQNPTMINK	10	Oxidation (M)	_AIQNPTM(Oxidation (M))INK_		AIQNPTM(1)INK		AIQNPTM(71)INK	0	0	1		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.3040161132812	2	573.302798	1144.59104	0.24706	0.00014164	0.11311	6.4847E-05	0.36017	0.00020649	573.3027548859585	28.686	0.86597	28.682	28.278	29.144	-0.0042572					66	30	3	0	0	0	0.020733	1	4967	4967		70.929	37.484	1	561940			558	6156	321	321	654	654		721			0.024531532830224023
AIQNPTMINK	10	Oxidation (M)	_AIQNPTM(Oxidation (M))INK_		AIQNPTM(1)INK		AIQNPTM(120)INK	0	0	1		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.30322265625	2	573.302798	1144.59104	0.021788	1.2491E-05	0.099443	5.7011E-05	0.12123	6.9502E-05	573.3028843162283	28.728	0.75233	28.728	28.268	29.02	0.0004673					62	26	3	0	0	0	0.0011942	2	4993	4993;5053		118.21	78.26	1	541380			559	6156	321	321	655;656	655		721			0.024531532830224023
AIQRARQAGRR	11	Unmodified	_AIQRARQAGRR_					0	0	0		ENST00000358025.7_1_14:64319748-64375843:+|nuORF	ENST00000358025.7_1_14:64319748-64375843:+|nuORF	ENST00000358025.7_1_14:64319748-64375843:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.25689697265625	3	428.256954	1281.74903	0.12471	5.3408E-05	0.48687	0.00020851	0.61158	0.00026191	428.25686544933825	85.796	2.3153	85.796	84.47	86.785	0					233	89	4	0	0	0	0.46475	2	22552	22552;22621		1.1098	1.1098	1	762820			560	9643	322	322	657;658	657					0.11942833377111128
AIQRARQAGRR	11	Unmodified	_AIQRARQAGRR_					0	0	0		ENST00000358025.7_1_14:64319748-64375843:+|nuORF	ENST00000358025.7_1_14:64319748-64375843:+|nuORF	ENST00000358025.7_1_14:64319748-64375843:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2568359375	3	428.256954	1281.74903	0.069988	2.9973E-05	0.42005	0.00017989	0.49004	0.00020986	428.2568514129929	85.804	2.1871	85.889	84.593	86.781	0.084251					213	84	4	0	0	0	0.46475	1	22597	22597		1.1098	1.1098	1	720040			561	9643	322	322	659	659					0.11942833377111128
AIQRARQAGRR	11	Unmodified	_AIQRARQAGRR_					0	0	0		ENST00000358025.7_1_14:64319748-64375843:+|nuORF	ENST00000358025.7_1_14:64319748-64375843:+|nuORF	ENST00000358025.7_1_14:64319748-64375843:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2569885253906	3	428.256954	1281.74903	0.1471	6.2996E-05	0.4011	0.00017178	0.5482	0.00023477	428.25681672654105	85.751	1.8648	85.742	84.497	86.362	-0.0090027					203	72	4	0	0	0	0.46475	1	22621	22621		1.1098	1.1098	1	945100			562	9643	322	322	660	660					0.11942833377111128
AIRKNVNIYRD	11	Unmodified	_AIRKNVNIYRD_					0	0	0		ENSG00000169251|ENST00000351193|NMD3	ENSG00000169251|ENST00000351193|NMD3	ENSG00000169251|ENST00000351193|NMD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.5853576660156	3	454.59312	1360.75753	-0.053606	-2.4369E-05	0.25661	0.00011665	0.20301	9.2285E-05	454.59314428697684	41.193	0.40282	41.193	41.01	41.413	0					24	14	2	0	0	0	0.33287	1	8809	8809		2.8433	0.21205	1	452030			563	6344	323	323	661	661					0.09158342503064887
AIRKNVNIYRD	11	Unmodified	_AIRKNVNIYRD_					0	0	0		ENSG00000169251|ENST00000351193|NMD3	ENSG00000169251|ENST00000351193|NMD3	ENSG00000169251|ENST00000351193|NMD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2922058105469	3	454.59312	1360.75753	-0.077706	-3.5324E-05	0.1445	6.5691E-05	0.066799	3.0366E-05	454.59316770700843	41	0.42703	41.097	40.832	41.259	0.096626					27	15	2	0	0	0	0.3322	1	8747	8747		4.7159	2.2811	1	502080			564	6344	323	323	662	662					0.09158342503064887
AIRNAMGSL	9	Oxidation (M)	_AIRNAM(Oxidation (M))GSL_		AIRNAM(1)GSL		AIRNAM(150)GSL	0	0	1		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7499084472656	2	474.750201	947.48585	-0.039704	-1.8849E-05	-1.4638	-0.00069495	-1.5035	-0.0007138	474.7499318215303	23.493	0.94031	23.493	23.145	24.085	0					141	32	6	0	0	0	4.3881E-05	2	3499	3499;3545		149.91	42.727	1	1075400			565	5402	324	324	663;664	663		653			0.01000656877261008
AIRNAMGSL	9	Oxidation (M)	_AIRNAM(Oxidation (M))GSL_		AIRNAM(1)GSL		AIRNAM(130)GSL	0	0	1		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7498474121094	2	474.750201	947.48585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.517	1	23.445	22.945	23.945	-0.072559								0	0	0	1.2188E-06	1	3475	3475		129.77	22.585	1				566	5402	324	324	665	665		653			0.01000656877261008
AIRNAMGSL	9	Oxidation (M)	_AIRNAM(Oxidation (M))GSL_		AIRNAM(1)GSL		AIRNAM(110)GSL	0	0	1		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.749755859375	2	474.750201	947.48585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.682	1	23.609	23.109	24.109	-0.072559								0	0	0	0.00010266	1	3524	3524		114.65	32.759	1				567	5402	324	324	666	666		653			0.01000656877261008
AIRNAMGSL	9	Oxidation (M)	_AIRNAM(Oxidation (M))GSL_		AIRNAM(1)GSL		AIRNAM(140)GSL	0	0	1		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7500305175781	2	474.750201	947.48585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.817	1	23.744	23.244	24.244	-0.072559								0	0	0	3.6696E-07	1	3565	3565		137.42	41.313	1				568	5402	324	324	667	667		653			0.01000656877261008
AIRNAMGSL	9	Oxidation (M)	_AIRNAM(Oxidation (M))GSL_		AIRNAM(1)GSL		AIRNAM(76)GSL	0	0	1		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7500915527344	2	474.750201	947.48585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.969	1	23.897	23.397	24.397	-0.072559								0	0	0	0.013058	1	3611	3611		75.761	13.188	1				569	5402	324	324	668	668		653			0.01000656877261008
AIRNAMGSL	9	Oxidation (M)	_AIRNAM(Oxidation (M))GSL_		AIRNAM(1)GSL		AIRNAM(110)GSL	0	0	1		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.74993896484375	2	474.750201	947.48585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.743	1	23.704	23.204	24.204	-0.038927								0	0	0	0.00024221	1	3538	3538		110.67	28.785	1				570	5402	324	324	669	669		653			0.01000656877261008
AIRNAMGSL	9	Oxidation (M)	_AIRNAM(Oxidation (M))GSL_		AIRNAM(1)GSL		AIRNAM(110)GSL	0	0	1		ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.7500915527344	2	474.750201	947.48585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.908	1	23.869	23.369	24.369	-0.038927								0	0	0	0.00010266	1	3588	3588		114.65	32.759	1				571	5402	324	324	670	670		653			0.01000656877261008
AIRTVTSAL	9	Unmodified	_AIRTVTSAL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2822265625	2	466.282192	930.549831	0.23403	0.00010912	0.036963	1.7235E-05	0.27099	0.00012636	466.2821123722705	37.757	0.55763	37.757	37.477	38.034	0					56	19	4	0	0	0	0.0042138	2	7785	7785;7830		92.653	24.573	1	1566000			572	530	325	325	671;672	671					0.08177760305829906
AIRTVTSAL	9	Unmodified	_AIRTVTSAL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.281982421875	2	466.282192	930.549831	0.096799	4.5136E-05	0.058833	2.7433E-05	0.15563	7.2569E-05	466.2821162417124	37.662	0.57023	37.752	37.501	38.071	0.09016					58	20	4	0	0	0	0.0054984	2	7759	7759;7805		86.332	27.653	1	1682300			573	530	325	325	673;674	673					0.08177760305829906
AIRTVTSAL	9	Unmodified	_AIRTVTSAL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2821350097656	2	466.282192	930.549831	0.19394	9.0431E-05	-0.049804	-2.3223E-05	0.14414	6.7208E-05	466.2820678630325	37.63	0.57937	37.727	37.428	38.007	0.097527					59	21	4	0	0	0	0.014206	2	7780	7729;7780		72.968	14.289	1	1551100			574	530	325	325	675;676	676					0.08177760305829906
AIRWWKYRLF	10	Unmodified	_AIRWWKYRLF_					0	0	0			REV__ENST00000320934.7_1_11:117076372-117076591:-|nuORF	REV__ENST00000320934.7_1_11:117076372-117076591:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7638854980469	3	480.275063	1437.80336	0.63212	0.00030359	3.865	0.0018563	4.4971	0.0021599	480.27860404193325	48.323	0.41969	48.371	48.181	48.601	0.04752					18	15	2	0	0	0	0.31746	1	11030	11030		6.1918	0	1	163750	+		575	19963	326	326	677	677					0.1019703247598045
AISFGLGKGK	10	Unmodified	_AISFGLGKGK_					0	0	0			REV__nc|ENSG00000133401|O15018-2|PDZD2	REV__nc|ENSG00000133401|O15018-2|PDZD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7824401855469	2	489.292559	976.570566	0.24575	0.00012025	1.1436	0.00055956	1.3894	0.00067981	489.29295256097885	33.053	0.32742	33.107	32.931	33.258	0.054375					17	11	2	0	0	0	0.21704	1	6359	6359		36.127	14.38	1	123510	+		576	15622	327	327	678	678					0.08134350685531899
AISFSANAGIL	11	Unmodified	_AISFSANAGIL_					0	0	0			REV__nc|ENSG00000185664|P40967-4|PMEL	REV__nc|ENSG00000185664|P40967-4|PMEL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8175048828125	2	532.292756	1062.57096	0.84103	0.00044767	3.3312	0.0017732	4.1723	0.0022209	532.2943331004625	77.619	0.16373	77.619	77.555	77.719	0					9	5	2	0	0	0	0.32667	1	20065	20065		5.2969	0	1	75557	+		577	18397	328	328	679	679					0.04217725614716983
AISLYSSWVFF	11	Unmodified	_AISLYSSWVFF_					0	0	0		ENST00000463438.5_1_3:14693292-14703332:+|nuORF	ENST00000463438.5_1_3:14693292-14703332:+|nuORF	ENST00000463438.5_1_3:14693292-14703332:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.25811767578125	3	440.560535	1318.65977	0.18864	8.3105E-05	1.2301	0.00054192	1.4187	0.00062503	440.5611781828642	58.683	0.38594	58.683	58.531	58.917	0					16	12	2	0	0	0	0.3322	1	14265	14265		4.7159	1.6437	1	118820			578	10765	329	329	680	680					0.013191408543661964
AISNGVYVLPS	11	Unmodified	_AISNGVYVLPS_					0	0	0		ENST00000532344.1_1_11:6632867-6633324:-|nuORF;ENSG00000166337|ENST00000299424|TAF10	ENST00000532344.1_1_11:6632867-6633324:-|nuORF	ENST00000532344.1_1_11:6632867-6633324:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.30712890625	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.504	1	93.591	93.091	94.091	0.08667								0	0	0	0.36517	1	24905	24905		4.897	0	1				579	6061	330	330	681	681					0.04261994786179457
AISNGVYVLPS	11	Unmodified	_AISNGVYVLPS_					0	0	0		ENST00000532344.1_1_11:6632867-6633324:-|nuORF;ENSG00000166337|ENST00000299424|TAF10	ENST00000532344.1_1_11:6632867-6633324:-|nuORF	ENST00000532344.1_1_11:6632867-6633324:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.3067626953125	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.601	1	93.6	93.1	94.1	-0.00051117								0	0	0	0.36517	1	24932	24932		4.897	0	1				580	6061	330	330	682	682					0.04261994786179457
AISSRLFSRNF	11	Unmodified	_AISSRLFSRNF_					0	0	0		ENST00000585184.1_1_18:20837141-20837297:-|nuORF	ENST00000585184.1_1_18:20837141-20837297:-|nuORF	ENST00000585184.1_1_18:20837141-20837297:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.88568115234375	3	433.238566	1296.69387	0.23995	0.00010396	1.7549	0.0007603	1.9949	0.00086425	433.23929548165364	20.252	0.65728	20.199	19.981	20.638	-0.05291					43	23	2	0	0	0	0.33202	1	2511	2511		2.8433	0.93691	1	327770			581	12101	331	331	683	683					0.0573898206598642
AISSSAISK	9	Unmodified	_AISSSAISK_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7;ENST00000537641.5_1_11:61178417-61183276:-|nuORF	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.24566650390625	2	432.245275	862.475997	0.17776	7.6837E-05	0.67018	0.00028968	0.84794	0.00036652	432.24550783883495	20.429	0.62491	20.319	20.104	20.729	-0.11003					52	22	3	0	0	0	0.10059	1	2546	2546		38.176	7.539	1	379260			582	4873	332	332	684	684					0.039257921435250864
AISSSAISK	9	Unmodified	_AISSSAISK_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7;ENST00000537641.5_1_11:61178417-61183276:-|nuORF	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	432.245275	862.475997	-0.076037	-3.2866E-05	0.75537	0.0003265	0.67933	0.00029364	432.24549261528034	20.256	0.89516	20.256	19.877	20.772	0	-0.037701	8.7316E-05	NaN	38.176	48	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342700			583	4873	332	332							0.039257921435250864
AITHQLLAF	9	Unmodified	_AITHQLLAF_					0	0	0			REV__ENST00000336032.3_1_6:89793930-89794134:+|nuORF	REV__ENST00000336032.3_1_6:89793930-89794134:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.283935546875	2	507.292559	1012.57057	0.30666	0.00015557	0.22985	0.0001166	0.53651	0.00027217	507.2925731334804	38.278	0.9947	38.375	37.899	38.893	0.097527					69	35	3	0	0	0	0.28674	1	7940	7940		10.824	0.75	1	498790	+		584	20069	333	333	685	685					0.06478350685517853
AITSFPLGALF	11	Unmodified	_AITSFPLGALF_					0	0	0			REV__ENST00000532085.1_1_11:118895622-118896243:-|nuORF	REV__ENST00000532085.1_1_11:118895622-118896243:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.3064575195312	2	568.82115	1135.62775	0.17281	9.8296E-05	1.624	0.00092377	1.7968	0.0010221	568.8225093870444	59.195	1.6465	59.195	58.767	60.413	0					177	58	6	0	0	0	0.10255	1	14311	14311		39.957	3.8303	1	21684000	+		585	15878	334	334	686	686					0.06535773171231085
AIVAYGLYK	9	Unmodified	_AIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2898254394531	2	499.289485	996.564418	0.63081	0.00031496	0.23572	0.00011769	0.86653	0.00043265	499.28953121967476	47.49	0.53137	47.49	47.214	47.745	0					36	18	2	0	0	0	0.0085732	1	10811	10811		81.613	24.142	1	6317600			586	7221	335	335	687	687					0.06599832453991894
AIVAYGLYK	9	Unmodified	_AIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2898864746094	2	499.289485	996.564418	0.46611	0.00023272	0.42165	0.00021053	0.88776	0.00044325	499.28963689525216	47.437	0.53484	47.49	47.192	47.727	0.052574					38	19	2	0	0	0	0.0088261	1	10742	10742		85.357	18.013	1	6680200			587	7221	335	335	688	688					0.06599832453991894
AIVAYGLYK	9	Unmodified	_AIVAYGLYK_					0	0	0		ENST00000470543.1_1_3:42826765-42845976:-|nuORF;ENSG00000181061|ENST00000321331|HIGD1A;nc|ENSG00000181061|Q9Y241-2|HIGD1A	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	ENST00000470543.1_1_3:42826765-42845976:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.28985595703125	2	499.289485	996.564418	0.83339	0.00041611	0.041014	2.0478E-05	0.87441	0.00043658	499.28945935400736	47.426	0.53534	47.47	47.185	47.72	0.04332					38	19	2	0	0	0	0.0088261	1	10734	10734		85.357	34.502	1	7563400			588	7221	335	335	689	689					0.06599832453991894
AIVKLFLKK	9	Unmodified	_AIVKLFLKK_					0	0	0		ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3681640625	2	530.36807	1058.72159	0.59817	0.00031725	0.098952	5.2481E-05	0.69712	0.00036973	530.3678635521832	36.468	0.52652	36.468	36.229	36.756	0					35	18	3	0	0	0	0.041175	1	7445	7445		56.177	32.156	1	392110			589	1556;355	336	336	690	690					0.19457537064181452
AIVKLFLKK	9	Unmodified	_AIVKLFLKK_					0	0	0		ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3681640625	2	530.36807	1058.72159	0.54181	0.00028736	0.090953	4.8238E-05	0.63276	0.0003356	530.3679110965081	36.313	0.55011	36.396	36.259	36.809	0.082355					42	19	3	0	0	0	0.079752	1	7416	7416		41.84	23.693	1	446850			590	1556;355	336	336	691	691					0.19457537064181452
AIVKLFLKK	9	Unmodified	_AIVKLFLKK_					0	0	0		ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.367919921875	2	530.36807	1058.72159	0.89682	0.00047565	-0.33742	-0.00017896	0.55941	0.00029669	530.367685675009	36.382	0.72902	36.468	36.244	36.973	0.08625					41	25	3	0	0	0	0.023967	1	7391	7391		62.573	33.491	1	389860			591	1556;355	336	336	692	692					0.19457537064181452
AIVYNVFFAGQ	11	Unmodified	_AIVYNVFFAGQ_					0	0	0			REV__ENSG00000196187|ENST00000366835|TMEM63A	REV__ENSG00000196187|ENST00000366835|TMEM63A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.19793701171875	3	410.21688	1227.62881	-0.25078	-0.00010288	0.92947	0.00038128	0.67868	0.00027841	410.2169457269795	15.875	0.076244	15.875	15.842	15.918	0					4	2	2	0	0	0	0.33287	1	1170	1170		2.8433	0.75728	1	5955.4	+		592	18628	337	337	693	693					0.024099875401361714
AIWTVHFSL	9	Unmodified	_AIWTVHFSL_					0	0	0			REV__ENSG00000158477|ENST00000289429|CD1A	REV__ENSG00000158477|ENST00000289429|CD1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.295654296875	2	537.292559	1072.57057	0.47864	0.00025717	0.34569	0.00018574	0.82434	0.00044291	537.292748853815	67.979	2.931	67.979	66.964	69.895	0					241	105	5	0	0	0	0.27532	1	16947	16947		12.532	12.532	1	2786800	+		593	16813	338	338	694	694					0.0371835068551718
AIYATIPVYK	10	Unmodified	_AIYATIPVYK_					0	0	0		ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2955932617188	2	569.828975	1137.6434	0.60938	0.00034724	1.1678	0.00066543	1.7772	0.0010127	569.8296913232363	53.119	0.4181	53.175	53.013	53.431	0.056255					32	14	3	0	0	0	0.014158	1	12530	12530		75.761	39.634	1	724080			594	6012	339	339	695	695					0.08008059688268077
AIYATIPVYK	10	Unmodified	_AIYATIPVYK_					0	0	0		ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.2954711914062	2	569.828975	1137.6434	0.32589	0.0001857	1.8465	0.0010522	2.1724	0.0012379	569.8299255573735	53.226	0.48016	53.217	52.976	53.456	-0.0096054					44	17	3	0	0	0	0.19311	1	12532	12532		51.63	27.609	1	697810			595	6012	339	339	696	696					0.08008059688268077
AIYATIPVYK	10	Unmodified	_AIYATIPVYK_					0	0	0		ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.828975	1137.6434	0.3331	0.00018981	1.3359	0.00076121	1.669	0.00095102	569.8297168985652	53.141	0.4537	53.141	52.932	53.386	0	-0.036742	-0.00016778	NaN	75.761	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	700130			596	6012	339	339							0.08008059688268077
AIYEPKTFK	9	Unmodified	_AIYEPKTFK_					0	0	0		ENSG00000242485|ENST00000344843|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.8058471679688	2	548.8055	1095.59645	0.22695	0.00012455	0.21608	0.00011858	0.44303	0.00024314	548.8055173144357	31.574	0.41032	31.574	31.284	31.694	0					31	14	3	0	0	0	0.16853	1	5921	5921		38.176	12.776	1	363980			597	8547	340	340	697	697					0.052472001371370425
AIYEPKTFK	9	Unmodified	_AIYEPKTFK_					0	0	0		ENSG00000242485|ENST00000344843|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.8055	1095.59645	0.31271	0.00017162	-0.015792	-8.6667E-06	0.29692	0.00016295	548.8056663891983	31.523	0.5773	31.565	31.106	31.683	0.042366	0.017727	-0.00013381	NaN	45.7	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	394490			598	8547	340	340							0.052472001371370425
AIYEPKTFK	9	Unmodified	_AIYEPKTFK_					0	0	0		ENSG00000242485|ENST00000344843|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	ENSG00000242485|ENST00000344843|MRPL20	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	548.8055	1095.59645	0.44846	0.00024612	0.11942	6.5538E-05	0.56788	0.00031166	548.8052694846201	31.462	0.466	31.503	31.206	31.672	0.040989	-0.044453	1.4605E-05	NaN	45.7	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432670			599	8547	340	340							0.052472001371370425
AIYGTRKFKK	10	Unmodified	_AIYGTRKFKK_					0	0	0		ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.51495361328125	3	404.580152	1210.71863	-0.1411	-5.7086E-05	0.26909	0.00010887	0.12799	5.1781E-05	404.5802488052512	16.53	0.66091	16.468	16.121	16.782	-0.062532					34	22	2	0	0	0	0.31497	1	1354	1354		14.218	2.7003	1	261410			600	7986	341	341	698	698					0.12169661939356047
AIYHLASI	8	Unmodified	_AIYHLASI_					0	0	0		ENST00000489134.5_1_6:105607679-105609814:-|nuORF;ENSG00000132429|ENST00000254765|POPDC3	ENST00000489134.5_1_6:105607679-105609814:-|nuORF	ENST00000489134.5_1_6:105607679-105609814:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.7658996582031	2	444.252903	886.491253	0.53865	0.0002393	0.82615	0.00036702	1.3648	0.00060632	444.253292867193	65.851	0.46129	65.851	65.545	66.007	0					34	16	3	0	0	0	0.31375	1	16453	16453		19.439	0	1	219380			601	3631	342	342	699	699					0.04346703731357593
AIYKTPPGIQK	11	Unmodified	_AIYKTPPGIQK_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.908203125	3	405.908046	1214.70231	-0.058726	-2.3837E-05	0.65718	0.00026676	0.59846	0.00024292	405.9082087349513	30.615	0.9513	30.615	30.167	31.118	0					64	33	3	0	0	0	0.069084	1	5626	5626		47.724	24.949	1	479220			602	7361	343	343	700	700					0.10354535982583002
AIYKTPPGIQK	11	Unmodified	_AIYKTPPGIQK_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.9083251953125	3	405.908046	1214.70231	-0.065146	-2.6443E-05	0.40234	0.00016331	0.33719	0.00013687	405.9082090842135	30.583	0.54269	30.611	30.382	30.924	0.027946					36	18	2	0	0	0	0.19715	1	5650	5650		31.462	11.836	1	484340			603	7361	343	343	701	701					0.10354535982583002
AIYKTPPGIQK	11	Unmodified	_AIYKTPPGIQK_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.908203125	3	405.908046	1214.70231	-0.27279	-0.00011073	0.87541	0.00035534	0.60263	0.00024461	405.9082513592764	30.571	0.74895	30.598	30.335	31.084	0.027157					72	26	4	0	0	0	0.098551	1	5610	5610		40.317	22.454	1	582740			604	7361	343	343	702	702					0.10354535982583002
AKAKLQKK	8	Unmodified	_AKAKLQKK_					0	0	0		ENST00000254109.9_1_16:31712056-31713112:+|nuORF	ENST00000254109.9_1_16:31712056-31713112:+|nuORF	ENST00000254109.9_1_16:31712056-31713112:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.16424560546875	2	457.810919	913.607286	-0.01214	-5.5577E-06	-0.026418	-1.2095E-05	-0.038558	-1.7652E-05	457.8108201924316	26.59	0.14477	26.59	26.469	26.614	0					6	4	2	0	0	0	0.34131	1	4364	4364		12.532	0	1	20257			605	8915	344	344	703	703					0.14702647302067362
AKDAFCCCNF	10	Unmodified	_AKDAFCCCNF_					0	0	0			REV__ENST00000497873.1_1_21:34107263-34123563:-|nuORF	REV__ENST00000497873.1_1_21:34107263-34123563:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7954711914062	2	561.21428	1120.41401	-0.021707	-1.2182E-05	-1.5139	-0.00084961	-1.5356	-0.00086179	561.213526185223	61.425	0.73638	61.415	61.194	61.93	-0.0094566					56	26	3	0	0	0	0.31889	1	15213	15213		3.2813	0	1	585250	+		606	21688	345	345	704	704					-0.14138341863144888
AKDEFKAVK	9	Unmodified	_AKDEFKAVK_					0	0	0		nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.7871704101562	2	518.295299	1034.57605	0.46814	0.00024263	0.35055	0.00018169	0.81868	0.00042432	518.2953684290583	49.591	0.97527	49.591	49.19	50.166	0					94	35	4	0	0	0	0.20626	1	11580	11580		22.736	0.98964	1	1827900			607	6660	346	346	705	705					0.06014029477319127
AKDFRDRI	8	Unmodified	_AKDFRDRI_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.7826843261719	2	510.78289	1019.55123	0.23388	0.00011946	-0.23877	-0.00012196	-0.0048934	-2.4995E-06	510.78273256005684	17.884	0.46715	17.884	17.66	18.127	0					25	15	2	0	0	0	0.44734	1	1779	1779		6.7232	0.53132	1	66284			608	8107	347	347	706	706					0.04223394394614388
AKDIGTWLQVL	11	Unmodified	_AKDIGTWLQVL_					0	0	0		nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000534161.5_1_11:418373-429524:-|nuORF;ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9	nc|ENSG00000185101|A1A5B4-2|ANO9	nc|ENSG00000185101|A1A5B4-2|ANO9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.8955993652344	3	415.239684	1242.69722	0.5338	0.00022165	-0.05861	-2.4337E-05	0.47519	0.00019732	415.2398129900148	45.32	0.56115	45.38	45.142	45.703	0.059837					24	19	2	0	0	0	0.3325	1	10053	10053		2.2527	0	1	119160			609	7507	348	348	707	707					0.08558232119980858
AKDTKIILVIL	11	Unmodified	_AKDTKIILVIL_					0	0	0		ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5605773925781	3	409.607596	1225.80096	0.4901	0.00020075	0.088384	3.6203E-05	0.57849	0.00023695	409.6076199207128	60.793	0.39796	60.784	60.546	60.944	-0.0094528					20	14	2	0	0	0	0.3325	1	14811	14811		2.2527	0	1	215570			610	7294	349	349	708	708					0.19709139227666128
AKDYFFKAAL	10	Unmodified	_AKDYFFKAAL_					0	0	0		ENSG00000105402|ENST00000263354|NAPA;nc|ENSG00000125814|Q9H115-2|NAPB;ENSG00000125814|ENST00000377026|NAPB;ENST00000472855.5_1_20:23360446-23370651:-|nuORF;nc|ENSG00000125814|Q9H115-3|NAPB	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.3196411132812	2	587.318774	1172.623	0.1027	6.0319E-05	-0.027645	-1.6236E-05	0.075057	4.4082E-05	587.318636975239	17.605	0.43524	17.488	17.259	17.694	-0.11739					26	14	2	0	0	0	0.40403	1	1677	1677		2.7352	0.23671	1	52590			611	1977	350	350	709	709					0.04358889028480917
AKEKKELAP	9	Unmodified	_AKEKKELAP_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3;ZFHX3|p.V2783Afs*6|1|0.37|ENSG00000140836|chr16:72794330-72794334|GGGGA/-|frameshift_variant	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.302978515625	2	507.303124	1012.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.711	1	41.711	41.211	42.211	0								0	0	0	0.23367	1	9014	9014		11.64	3.047	1				612	4338	351	351	710	710					0.08590315994365483
AKEQNSVSK	9	Unmodified	_AKEQNSVSK_					0	0	0		AluSq_dup15120|chr16:70152239-70152538:+|1.4500013598439412|0.1037547013148757|3.8|538.0|5|2|sense	AluSq_dup15120|chr16:70152239-70152538:+|1.4500013598439412|0.1037547013148757|3.8|538.0|5|2|sense	AluSq_dup15120|chr16:70152239-70152538:+|1.4500013598439412|0.1037547013148757|3.8|538.0|5|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7540588378906	2	495.764363	989.514173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.08	1	28.076	27.576	28.576	-0.0042572								0	0	0	0.16757	1	4854	4854		30.637	1.555	1				613	33	352	352	711	711					0.018996780581915118
AKESPQRKKR	10	Unmodified	_AKESPQRKKR_					0	0	0		WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant;ENSG00000163811|ENST00000407426|WDR43	WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant	WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5300598144531	3	409.914194	1226.72075	-0.27505	-0.00011275	-1.8077	-0.00074101	-2.0828	-0.00085376	409.9136833274312	13.726	0.22449	13.621	13.46	13.685	-0.10466					10	7	2	0	0	0	0.32165	1	474	474		0.69767	0.07084	1	22519			614	5736	353	353	712	712					0.11646090677163556
AKESPQRKKR	10	Unmodified	_AKESPQRKKR_					0	0	0		WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant;ENSG00000163811|ENST00000407426|WDR43	WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant	WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	409.914194	1226.72075	-0.28443	-0.00011659	-0.77726	-0.00031861	-1.0617	-0.0004352	409.914046586912	13.723	0.19692	13.656	13.55	13.747	-0.066068	0.017604	0.0010435	NaN	0.69767	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21232			615	5736	353	353							0.11646090677163556
AKFRKQERA	9	Unmodified	_AKFRKQERA_					0	0	0		ENSG00000165462|ENST00000298231|PHOX2A;ENSG00000109132|ENST00000226382|PHOX2B	ENSG00000165462|ENST00000298231|PHOX2A	ENSG00000165462|ENST00000298231|PHOX2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3294677734375	2	567.330539	1132.64652	0.24926	0.00014142	-0.41895	-0.00023768	-0.16969	-9.6268E-05	567.3301009501672	80.463	2.8102	80.463	78.645	81.455	0					407	117	5	0	0	0	0.29176	3	20898	20799;20898;20928		10.074	2.465	1	5542900			616	2238	354	354	713;714;715	714					0.0855074758567298
AKFRKQERA	9	Unmodified	_AKFRKQERA_					0	0	0		ENSG00000165462|ENST00000298231|PHOX2A;ENSG00000109132|ENST00000226382|PHOX2B	ENSG00000165462|ENST00000298231|PHOX2A	ENSG00000165462|ENST00000298231|PHOX2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3295288085938	2	567.330539	1132.64652	0.26897	0.0001526	-0.44866	-0.00025454	-0.17969	-0.00010194	567.3300574984545	80.382	2.87	80.447	78.587	81.457	0.065102					380	122	5	0	0	0	0.29176	2	20786	20786;20833		10.074	3.8681	1	6235000			617	2238	354	354	716;717	716					0.0855074758567298
AKFRKQERA	9	Unmodified	_AKFRKQERA_					0	0	0		ENSG00000165462|ENST00000298231|PHOX2A;ENSG00000109132|ENST00000226382|PHOX2B	ENSG00000165462|ENST00000298231|PHOX2A	ENSG00000165462|ENST00000298231|PHOX2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.32958984375	2	567.330539	1132.64652	0.28491	0.00016164	-0.80265	-0.00045537	-0.51773	-0.00029372	567.3299030070093	80.442	2.8672	80.416	78.604	81.472	-0.026825					370	113	5	0	0	0	0.25989	2	20825	20825;21144		14.838	4.0143	1	5958500			618	2238	354	354	718;719	718					0.0855074758567298
AKGLQVQAVF	10	Unmodified	_AKGLQVQAVF_					0	0	0		ENST00000368679.8_1_10:127705243-127705441:-|nuORF	ENST00000368679.8_1_10:127705243-127705441:-|nuORF	ENST00000368679.8_1_10:127705243-127705441:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3121337890625	2	530.811116	1059.60768	0.43605	0.00023146	2.7342	0.0014514	3.1703	0.0016828	530.8126550467383	19.979	0.66001	19.979	19.547	20.207	0					52	24	3	0	0	0	0.31629	1	2439	2439		10.074	1.4806	1	277910			619	9765	355	355	720	720					0.0802602223127451
AKGVRSSGQK	10	Unmodified	_AKGVRSSGQK_					0	0	0		ENST00000566016.5_1_16:46637844-46655271:-|nuORF;ENSG00000171241|ENST00000303383|SHCBP1	ENST00000566016.5_1_16:46637844-46655271:-|nuORF	ENST00000566016.5_1_16:46637844-46655271:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2811584472656	2	509.293622	1016.57269	-0.026822	-1.366E-05	2.778	0.0014148	2.7512	0.0014012	509.29535197808275	30.084	0.78475	30.112	29.637	30.422	0.027157					47	26	3	0	0	0	0.3258	1	5440	5440		17.113	1.2657	1	300970			620	6530	356	356	721	721					0.06506779423341413
AKIGMPIAT	9	Unmodified	_AKIGMPIAT_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.77923583984375	2	451.262413	900.510274	0.22314	0.0001007	-0.63926	-0.00028847	-0.41612	-0.00018778	451.2620052576489	29.853	0.47236	29.865	29.532	30.004	0.012266					23	15	2	0	0	0	0.2451	1	5409	5409		15.847	15.847	1	119530	+		621	15026	357	357	722	722					0.05603917030782668
AKIGMPIAT	9	Unmodified	_AKIGMPIAT_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	451.262413	900.510274	0.33424	0.00015083	-0.82068	-0.00037034	-0.48644	-0.00021951	451.2619760757903	29.856	0.36654	29.856	29.633	29.999	0	0.021959	-0.00015586	NaN	10.074	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89186	+		622	15026	357	357							0.05603917030782668
AKIKEWQWPRT	11	Unmodified	_AKIKEWQWPRT_					0	0	0			REV__nc|ENSG00000089050|O75884-2|RBBP9	REV__nc|ENSG00000089050|O75884-2|RBBP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.78729248046875	3	481.601616	1441.78302	0.451	0.0002172	-1.2083	-0.00058192	-0.75731	-0.00036472	481.6010027425062	32.318	0.51527	32.318	32.091	32.606	0					32	18	2	0	0	0	0.33296	1	6202	6202		2.6312	0.19645	1	157240	+		623	14022	358	358	723	723					0.07979817025488956
AKIKEWQWPRT	11	Unmodified	_AKIKEWQWPRT_					0	0	0			REV__nc|ENSG00000089050|O75884-2|RBBP9	REV__nc|ENSG00000089050|O75884-2|RBBP9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	481.601616	1441.78302	0.30444	0.00014662	-1.2398	-0.00059707	-0.93532	-0.00045045	481.6010200177919	32.206	0.45376	32.259	32.043	32.497	0.052856	-0.018582	-3.7524E-05	NaN	2.6312	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205410	+		624	14022	358	358							0.07979817025488956
AKINRIPANLL	11	Unmodified	_AKINRIPANLL_					0	0	0		nc|ENSG00000198010|Q9P1A6-3|DLGAP2;nc|ENSG00000198010|Q9P1A6-2|DLGAP2;nc|ENSG00000198010|Q9P1A6|DLGAP2;ENSG00000198010|ENST00000637795|DLGAP2	nc|ENSG00000198010|Q9P1A6-3|DLGAP2	nc|ENSG00000198010|Q9P1A6-3|DLGAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.89971923828125	3	408.25919	1221.75574	-0.031172	-1.2726E-05	1.5075	0.00061546	1.4764	0.00060274	408.25961171402577	52.406	1.0133	52.406	51.836	52.849	0					46	36	2	0	0	0	0.33334	1	12176	12176		1.2148	1.0555	1	517990			625	8025	359	359	724	724					0.1537333348512675
AKKEKREQER	10	Unmodified	_AKKEKREQER_					0	0	0			REV__nc|ENSG00000137804|Q9BXS6-7|NUSAP1	REV__nc|ENSG00000137804|Q9BXS6-7|NUSAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8822021484375	3	434.580992	1300.72115	-0.42572	-0.00018501	0.66168	0.00028756	0.23597	0.00010255	434.58141368821435	13.79	0.27207	13.79	13.66	13.932	0					14	9	2	0	0	0	0.32162	1	561	561		0.77653	0.27058	1	23604	+		626	15883	360	360	725	725					0.08281465606341953
AKKEKREQER	10	Unmodified	_AKKEKREQER_					0	0	0			REV__nc|ENSG00000137804|Q9BXS6-7|NUSAP1	REV__nc|ENSG00000137804|Q9BXS6-7|NUSAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	434.580992	1300.72115	-0.38139	-0.00016575	1.5272	0.00066367	1.1458	0.00049793	435.2509275508353	13.941	0.24836	13.837	13.713	13.961	-0.10466	0.023485	0.00084514	NaN	0.77653	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18908	+		627	15883	360	360							0.08281465606341953
AKKERTKIEF	10	Unmodified	_AKKERTKIEF_					0	0	0		ENST00000583329.5_1_17:73699767-73702598:+|nuORF;ENST00000578756.5_1_17:73699860-73702598:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP	ENST00000583329.5_1_17:73699767-73702598:+|nuORF	ENST00000583329.5_1_17:73699767-73702598:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.3656616210938	2	625.366787	1248.71902	0.16093	0.00010064	-0.47297	-0.00029578	-0.31204	-0.00019514	625.3663374710434	98.302	0.41965	98.295	98.075	98.494	-0.0068283					110	47	3	0	0	0	0.40943	1	26380	26380		1.4819	0	1	697460			628	5515	361	361	726	726					0.10461036868537121
AKKHVKLFL	9	Unmodified	_AKKHVKLFL_					0	0	0			REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF;REV__ENSG00000140876|ENST00000268533|NUDT7	REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.33642578125	2	542.355494	1082.69644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.744	1	97.737	97.237	98.237	-0.0068283								0	0	0	0.26334	1	26172	26172		2.0598	0.57785	1		+		629	22336;16057	362	362	727	727					0.1583948226159464
AKKNKLPSK	9	Unmodified	_AKKNKLPSK_					0	0	0		DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2435607910156	2	507.326934	1012.63931	-0.39623	-0.00020102	2.0912	0.0010609	1.695	0.00085991	507.3275072692529	34.383	0.50013	34.449	34.176	34.676	0.06636					26	17	2	0	0	0	0.25622	1	6821	6821		7.2892	0.56607	1	114500			630	261	363	363	728	728					0.13350014985235248
AKKPEEKP	8	Unmodified	_AKKPEEKP_					0	0	0		nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH	nc|ENSG00000100285|P12036-2|NEFH	nc|ENSG00000100285|P12036-2|NEFH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.24798583984375	2	463.768917	925.523281	-0.15429	-7.1554E-05	0.05455	2.5299E-05	-0.099738	-4.6255E-05	463.76890311117944	28.284	0.84151	28.284	27.793	28.635	0.0004673					51	29	2	0	0	0	0.34337	1	4815	4815		5.2307	5.2307	1	183470			631	1558	364	364	729	729					0.05754071414514783
AKKPEEKP	8	Unmodified	_AKKPEEKP_					0	0	0		nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH	nc|ENSG00000100285|P12036-2|NEFH	nc|ENSG00000100285|P12036-2|NEFH	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	463.768917	925.523281	-0.31892	-0.0001479	0.052311	2.426E-05	-0.26661	-0.00012364	463.76896774274866	28.28	0.67862	28.28	27.87	28.548	0	-0.0089631	-5.7333E-05	NaN	5.2307	44	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227850			632	1558	364	364							0.05754071414514783
AKKPEEKP	8	Unmodified	_AKKPEEKP_					0	0	0		nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH	nc|ENSG00000100285|P12036-2|NEFH	nc|ENSG00000100285|P12036-2|NEFH	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	463.768917	925.523281	-0.22296	-0.0001034	0.20479	9.4974E-05	-0.01817	-8.4268E-06	463.76906028618987	28.308	0.8068	28.303	27.763	28.57	-0.0042572	0.014084	8.4095E-05	NaN	5.2307	45	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209090			633	1558	364	364							0.05754071414514783
AKKTIGRQHVT	11	Unmodified	_AKKTIGRQHVT_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8694458007812	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.19	1	115.17	114.67	115.67	-0.020988								0	0	0	0.37609	1	29879	29879		2.4985	0	1				634	1550	365	365	730	730					0.11614974819917734
AKKVTVTVP	9	Unmodified	_AKKVTVTVP_					0	0	0			REV__ENST00000597192.1_1_2:220423924-220424017:+|nuORF	REV__ENST00000597192.1_1_2:220423924-220424017:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2196960449219	2	471.80276	941.590967	0.23317	0.00011001	-0.30399	-0.00014343	-0.070822	-3.3414E-05	471.80262672646967	19.607	0.36874	19.551	19.309	19.678	-0.055693					20	12	2	0	0	0	0.26031	1	2306	2306		3.5965	1.2938	1	41993	+		635	22607	366	366	731	731					0.11783521345341796
AKKYLCKVK	9	Unmodified	_AKKYLCKVK_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2698974609375	2	540.833537	1079.65252	0.12073	6.5292E-05	2.8751	0.0015549	2.9958	0.0016202	540.8347952383058	12.242	0.16118	12.242	12.171	12.332	0					10	5	3	0	0	0	0.26168	1	60	60		1.8442	0.19162	1	18498			636	837	367	367	732	732					0.11588129772940192
AKLCLPTPK	9	Unmodified	_AKLCLPTPK_					0	0	0		ENST00000609438.1_1_4:90161511-90161565:-|nuORF	ENST00000609438.1_1_4:90161511-90161565:-|nuORF	ENST00000609438.1_1_4:90161511-90161565:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002624511719	2	485.791338	969.568123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.139	1	49.171	48.671	49.671	0.032043								0	0	0	0.21673	1	11290	11290		17.113	1.3447	1				637	12325	368	368	733	733					0.08212178956193839
AKLETFRP	8	Unmodified	_AKLETFRP_					0	0	0			REV__nc|ENSG00000169398|Q05397-2|PTK2	REV__nc|ENSG00000169398|Q05397-2|PTK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.78729248046875	2	481.276909	960.539266	0.4502	0.00021667	0.13803	6.6431E-05	0.58824	0.0002831	481.27667557132327	32.333	0.65248	32.333	32.01	32.662	0					48	23	3	0	0	0	0.35375	1	6202	6202		24.674	6.5389	1	157450	+		638	17514	369	369	734	734					0.05741777651417124
AKLETFRP	8	Unmodified	_AKLETFRP_					0	0	0			REV__nc|ENSG00000169398|Q05397-2|PTK2	REV__nc|ENSG00000169398|Q05397-2|PTK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7870178222656	2	481.276909	960.539266	0.57076	0.00027469	-0.065164	-3.1362E-05	0.5056	0.00024333	481.2765565179441	32.21	0.4988	32.262	32.003	32.502	0.051304					41	17	3	0	0	0	0.42758	1	6160	6160		13.508	0.97634	1	217480	+		639	17514	369	369	735	735					0.05741777651417124
AKLETFRP	8	Unmodified	_AKLETFRP_					0	0	0			REV__nc|ENSG00000169398|Q05397-2|PTK2	REV__nc|ENSG00000169398|Q05397-2|PTK2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	481.276909	960.539266	0.4502	0.00021667	0.13803	6.6431E-05	0.58824	0.0002831	481.27667557132327	32.333	0.65248	32.333	32.01	32.662	0	0.042442	6.4982E-05	NaN	24.674	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157450	+		640	17514	369	369							0.05741777651417124
AKLETFRP	8	Unmodified	_AKLETFRP_					0	0	0			REV__nc|ENSG00000169398|Q05397-2|PTK2	REV__nc|ENSG00000169398|Q05397-2|PTK2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	481.276909	960.539266	0.57076	0.00027469	-0.065164	-3.1362E-05	0.5056	0.00024333	481.2765565179441	32.21	0.4988	32.262	32.003	32.502	0.051304	-0.028459	-0.0001306	NaN	24.674	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217480	+		641	17514	369	369							0.05741777651417124
AKLETFRP	8	Unmodified	_AKLETFRP_					0	0	0			REV__nc|ENSG00000169398|Q05397-2|PTK2	REV__nc|ENSG00000169398|Q05397-2|PTK2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	481.276909	960.539266	0.30364	0.00014614	0.15398	7.4107E-05	0.45762	0.00022024	481.2765792707003	32.222	0.53415	32.276	32.045	32.579	0.054371	-0.013983	8.0334E-05	NaN	24.674	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204630	+		642	17514	369	369							0.05741777651417124
AKLGRERRRPL	11	Unmodified	_AKLGRERRRPL_					0	0	0		ENST00000372903.6_1_6:42531844-42531958:+|nuORF	ENST00000372903.6_1_6:42531844-42531958:+|nuORF	ENST00000372903.6_1_6:42531844-42531958:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.6003112792969	3	451.284621	1350.83203	0.32094	0.00014484	-2.7926	-0.0012603	-2.4717	-0.0011154	451.2830401203237	56.678	0.30679	56.756	56.704	57.011	0.078674					15	11	2	0	0	0	0.33169	1	13649	13649		3.8459	1.2147	1	134130			643	9854	370	370	736	736					0.17065150105122484
AKLMKNIR	8	Unmodified	_AKLMKNIR_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.77947998046875	2	487.302404	972.590256	0.49069	0.00023911	-2.301	-0.0011213	-1.8104	-0.00088219	487.3001660701247	49.925	0.16201	49.946	49.876	50.038	0.020695					8	5	2	0	0	0	0.34218	1	11535	11535		9.3474	3.1417	1	94750			644	300	371	371	737	737					0.10286403424640866
AKLRAKIKEM	10	Unmodified	_AKLRAKIKEM_					0	0	0			REV__nc|ENSG00000126970|Q9NQZ6-2|ZC4H2	REV__nc|ENSG00000126970|Q9NQZ6-2|ZC4H2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.7908935546875	2	594.368275	1186.722	0.52565	0.00031243	0.060205	3.5784E-05	0.58585	0.00034821	594.3680597423912	38.01	0.66027	38.101	37.934	38.594	0.090881					52	23	3	0	0	0	0.32033	1	7834	7834		3.5965	0	1	279700	+		645	15328	372	372	738	738					0.13610588721712702
AKLYEAVTF	9	Unmodified	_AKLYEAVTF_					0	0	0		nc|ENSG00000159885|Q9UK12|ZNF222	nc|ENSG00000159885|Q9UK12|ZNF222	nc|ENSG00000159885|Q9UK12|ZNF222	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7561645507812	2	521.2844	1040.55425	0.19086	9.9495E-05	-0.19109	-9.9611E-05	-0.00022382	-1.1667E-07	521.2839560622206	81.748	0.47811	81.817	81.65	82.128	0.068985					32	20	2	0	0	0	0.20881	1	21278	21278		27.629	2.2295	1	115600			646	12787	373	373	739	739					0.035592247287468126
AKMKAFKKEL	10	Unmodified	_AKMKAFKKEL_					0	0	0		nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron;ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|4|intron;ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|3|intron;ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|2|intron;ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|7|intron;ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|1|intron;ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|6|intron;ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|5|intron;ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|8|intron	nc|ENSG00000168502|Q9Y4B5-2|MTCL1	nc|ENSG00000168502|Q9Y4B5-2|MTCL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8560791015625	2	597.357376	1192.7002	0.5263	0.00031439	0.94113	0.00056219	1.4674	0.00087658	597.3585424498953	90.185	1.4279	90.185	89.495	90.923	0					313	115	4	0	0	0	0.41085	1	23715	23715		1.4819	0.95714	1	1038300			647	6280	374	374	740	740					0.11155783973163125
AKPGPRRELPG	11	Unmodified	_AKPGPRRELPG_					0	0	0		ENST00000538236.1_1_12:123345166-123345832:+|nuORF	ENST00000538236.1_1_12:123345166-123345832:+|nuORF	ENST00000538236.1_1_12:123345166-123345832:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3428955078125	2	589.343646	1176.67274	-0.021757	-1.2822E-05	-0.41904	-0.00024696	-0.4408	-0.00025978	589.343084559243	105.12	0.32909	105.12	104.99	105.32	0					70	47	2	0	0	0	0.3327	1	27894	27894		2.7352	0.89096	1	125350			648	11701	375	375	741	741					0.09147016757128767
AKPGPRRELPG	11	Unmodified	_AKPGPRRELPG_					0	0	0		ENST00000538236.1_1_12:123345166-123345832:+|nuORF	ENST00000538236.1_1_12:123345166-123345832:+|nuORF	ENST00000538236.1_1_12:123345166-123345832:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	589.343646	1176.67274	0.12734	7.5047E-05	-0.83052	-0.00048946	-0.70318	-0.00041442	589.3426239292877	105.06	0.1929	105.06	104.95	105.14	0.0018463	-0.063473	-0.00029015	NaN	2.7352	41	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119670			649	11701	375	375							0.09147016757128767
AKPGPRRELPG	11	Unmodified	_AKPGPRRELPG_					0	0	0		ENST00000538236.1_1_12:123345166-123345832:+|nuORF	ENST00000538236.1_1_12:123345166-123345832:+|nuORF	ENST00000538236.1_1_12:123345166-123345832:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	589.343646	1176.67274	0.31874	0.00018785	-0.71677	-0.00042243	-0.39803	-0.00023458	589.3426956632405	105.2	0.28539	105.2	104.98	105.26	0.0031738	0.070612	-0.00015607	NaN	2.7352	58	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123390			650	11701	375	375							0.09147016757128767
AKPRGIDKPRF	11	Unmodified	_AKPRGIDKPRF_					0	0	0			REV__nc|ENSG00000144744|Q8TBC4-2|UBA3	REV__nc|ENSG00000144744|Q8TBC4-2|UBA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	643.3711547851562	2	642.880396	1283.74624	1.1058	0.00071093	-0.90516	-0.00058191	0.20069	0.00012902	642.879289991625	50.542	0.51083	50.562	50.335	50.846	0.020691					33	18	3	0	0	0	0.30814	1	11703	11703		23.79	5.6434	1	679750	+		651	16258	376	376	742	742					0.11571565199596989
AKQPKDVIV	9	Unmodified	_AKQPKDVIV_					0	0	0			REV__ACSL6|p.I272Mfs*30|1|0.26|ENSG00000164398|chr5:131985432-131985432|A/-|frameshift_variant	REV__ACSL6|p.I272Mfs*30|1|0.26|ENSG00000164398|chr5:131985432-131985432|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.79620361328125	2	499.305667	996.596781	-0.0093329	-4.66E-06	-1.7916	-0.00089457	-1.801	-0.00089923	499.30474990246677	13.744	0.56234	13.64	13.487	14.049	-0.10466					39	19	3	0	0	0	0.26145	1	495	495		0.52476	0	1	93430	+		652	13074	377	377	743	743					0.09834619856985682
AKREAAALK	9	Unmodified	_AKREAAALK_					0	0	0		ENST00000392258.7_1_2:202137481-202146584:+|nuORF	ENST00000392258.7_1_2:202137481-202146584:+|nuORF	ENST00000392258.7_1_2:202137481-202146584:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7637634277344	2	479.295633	956.576714	-0.041887	-2.0076E-05	0.29438	0.00014109	0.25249	0.00012102	479.295839804667	19.092	0.59723	19.092	18.864	19.461	0					37	20	3	0	0	0	0.24636	1	2147	2147		16.149	0.90062	1	185530			653	10029	378	378	744	744					0.0966886891702643
AKREGARVRSS	11	Unmodified	_AKREGARVRSS_					0	0	0			REV__ENST00000473231.5_1_1:157666813-157667212:-|nuORF	REV__ENST00000473231.5_1_1:157666813-157667212:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8474731445312	2	608.847084	1215.67962	0.63465	0.0003864	-0.71138	-0.00043312	-0.076736	-4.6721E-05	608.846717737209	84.271	0.30029	84.271	84.137	84.437	0					37	11	4	0	0	0	0.44828	1	22063	22063		4.897	0.56777	1	2610300	+		654	21380	379	379	745	745					0.08040329637719879
AKRFAHLAAVK	11	Unmodified	_AKRFAHLAAVK_					0	0	0		nc|ENSG00000137494|Q8N9B4|ANKRD42;ENSG00000137494|ENST00000533342|ANKRD42	nc|ENSG00000137494|Q8N9B4|ANKRD42	nc|ENSG00000137494|Q8N9B4|ANKRD42	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3707275390625	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.315	1	86.399	85.899	86.899	0.084251								0	0	0	0.33176	1	22704	22704		12.241	0	1				655	4051	380	380	746	746					0.132924840334681
AKRKAKGPT	9	Unmodified	_AKRKAKGPT_					0	0	0			REV__ENST00000576764.1_1_17:3807220-3807855:-|nuORF	REV__ENST00000576764.1_1_17:3807220-3807855:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.8214416503906	2	478.803626	955.592698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.064	1	11.996	11.496	12.496	-0.06806								0	0	0	0.264	1	15	15		1.8442	1.1539	1		+		656	14591	381	381	747	747					0.11312575153931448
AKRNLPLKLLI	11	Unmodified	_AKRNLPLKLLI_					0	0	0		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.904296875	3	426.958852	1277.85473	-0.37143	-0.00015858	1.0042	0.00042876	0.63279	0.00027017	426.9590283164239	45.95	0.30669	46.01	45.844	46.15	0.059834					12	10	2	0	0	0	0.3322	1	10258	10258		0.40827	0	1	161500			657	4930	382	382	748	748					0.226913564500137
AKRPELSGPLF	11	Unmodified	_AKRPELSGPLF_					0	0	0		nc|ENSG00000214413|A8MTZ0-3|BBIP1	nc|ENSG00000214413|A8MTZ0-3|BBIP1	nc|ENSG00000214413|A8MTZ0-3|BBIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.56781005859375	3	405.567912	1213.68191	-0.41271	-0.00016738	-0.19553	-7.9301E-05	-0.60824	-0.00024668	405.56799651247485	35.412	1.5815	35.412	34.618	36.2	0					168	57	5	0	0	0	0.39244	1	7211	7211		12.228	3.7833	1	3189400			658	12942	383	383	749	749					0.08361365322775782
AKRSPATPLS	10	Unmodified	_AKRSPATPLS_					0	0	0			REV__ENSG00000189325|ENST00000437635|BNIP5	REV__ENSG00000189325|ENST00000437635|BNIP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2987670898438	2	514.298373	1026.58219	0.071578	3.6813E-05	0.043539	2.2392E-05	0.11512	5.9205E-05	514.2984284776212	25.125	0.50309	25.069	24.837	25.341	-0.055931					31	17	2	0	0	0	0.3144	1	3965	3965		13.042	2.2185	1	102150	+		659	18605	384	384	750	750					0.0699654770885445
AKRSPATPLS	10	Unmodified	_AKRSPATPLS_					0	0	0			REV__ENSG00000189325|ENST00000437635|BNIP5	REV__ENSG00000189325|ENST00000437635|BNIP5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	514.298373	1026.58219	-0.20659	-0.00010625	0.46004	0.0002366	0.25345	0.00013035	514.2986605797435	25.117	0.61004	25.086	24.796	25.406	-0.03141	0.019852	0.0002492	NaN	13.042	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92611	+		660	18605	384	384							0.0699654770885445
AKSALRPKL	9	Unmodified	_AKSALRPKL_					0	0	0			REV__ENSG00000198478|ENST00000369838|SH3BGRL2	REV__ENSG00000198478|ENST00000369838|SH3BGRL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.67364501953125	2	492.321651	982.62875	0.14424	7.1011E-05	-0.37817	-0.00018618	-0.23393	-0.00011517	492.32137113251724	15.718	0.318	15.718	15.498	15.816	0					15	10	2	0	0	0	0.26031	1	1060	1060		3.5965	1.019	1	18695	+		661	18826	385	385	751	751					0.13674032330777663
AKSALRPKL	9	Unmodified	_AKSALRPKL_					0	0	0			REV__ENSG00000198478|ENST00000369838|SH3BGRL2	REV__ENSG00000198478|ENST00000369838|SH3BGRL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	492.321651	982.62875	0.14005	6.8952E-05	-0.15493	-7.6273E-05	-0.014871	-7.3214E-06	492.32155891331286	15.829	0.29063	15.764	15.573	15.864	-0.064414	0.03824	7.0593E-05	NaN	3.5965	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23595	+		662	18826	385	385							0.13674032330777663
AKSEDLEKLI	10	Unmodified	_AKSEDLEKLI_					0	0	0			REV__ENSG00000145331|ENST00000394876|TRMT10A	REV__ENSG00000145331|ENST00000394876|TRMT10A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.3240966796875	2	573.324254	1144.63395	0.19018	0.00010903	-1.0066	-0.00057711	-0.81642	-0.00046807	573.3242715626437	101.23	1.9357	101.23	100.51	102.45	-0.0054703					557	273	3	0	0	0	0.40106	1	27091	27091		3.2813	3.2813	1	615640	+		663	16287	386	386	752	752					0.06742246612111558
AKSKRTHL	8	Unmodified	_AKSKRTHL_					0	0	0		LTR12C_dup692|chr4:69114298-69115807:-|5.576688884045835|0.1619943684727404|5.11|537.0|63|3|anti-sense	LTR12C_dup692|chr4:69114298-69115807:-|5.576688884045835|0.1619943684727404|5.11|537.0|63|3|anti-sense	LTR12C_dup692|chr4:69114298-69115807:-|5.576688884045835|0.1619943684727404|5.11|537.0|63|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2957763671875	2	470.787976	939.561398	-0.26188	-0.00012329	0.18258	8.5958E-05	-0.079298	-3.7332E-05	470.78813861964323	13.378	0.17357	13.378	13.254	13.427	0					17	5	4	0	0	0	0.34131	1	417	417		12.532	0.29089	1	183560			664	12507	387	387	753	753					0.08920002119862147
AKTQEHNF	8	Unmodified	_AKTQEHNF_					0	0	0			REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7380676269531	2	487.738148	973.461744	0.11738	5.7252E-05	0.018488	9.0175E-06	0.13587	6.627E-05	487.7381135000963	25.738	0.79665	25.738	25.445	26.242	0					47	27	2	0	0	0	0.27124	1	4160	4160		34.102	2.8341	1	325620	+		665	17217	388	388	754	754					-0.026048602847595248
AKTQEHNF	8	Unmodified	_AKTQEHNF_					0	0	0			REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7381286621094	2	487.738148	973.461744	0.13132	6.4052E-05	-0.0296	-1.4437E-05	0.10172	4.9615E-05	487.73808363844	25.798	0.94287	25.776	25.496	26.439	-0.022238					53	33	2	0	0	0	0.27124	2	4184	4184;4232		34.102	2.8341	1	382950	+		666	17217	388	388	755;756	755					-0.026048602847595248
AKTQEHNF	8	Unmodified	_AKTQEHNF_					0	0	0			REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7381896972656	2	487.738148	973.461744	0.13132	6.4052E-05	-0.0296	-1.4437E-05	0.10172	4.9615E-05	487.73808363844	25.798	0.94287	25.776	25.496	26.439	-0.022238					53	33	2	0	0	0	0.29634	1	4136	4136		34.102	3.4659	1	382950	+		667	17217	388	388	757	757					-0.026048602847595248
AKVEVLPVK	9	Unmodified	_AKVEVLPVK_					0	0	0			REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.79608154296875	2	491.81841	981.622267	0.20056	9.8639E-05	0.35939	0.00017675	0.55995	0.00027539	491.8185315248514	41.035	0.27274	41.035	40.796	41.069	0					17	9	2	0	0	0	0.24993	1	8805	8805		13.042	3.6593	1	118930	+		668	15008	389	389	758	758					0.1307209437942447
AKVEVLPVK	9	Unmodified	_AKVEVLPVK_					0	0	0			REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.81841	981.622267	0.30327	0.00014915	0.6095	0.00029977	0.91277	0.00044892	491.818620975221	40.678	0.21352	40.777	40.592	40.806	0.099407	-0.12868	0.00013094	NaN	13.042	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111700	+		669	15008	389	389							0.1307209437942447
AKVYFAEQF	9	Unmodified	_AKVYFAEQF_					0	0	0			REV__nc|ENSG00000185104|Q9UNN5-2|FAF1	REV__nc|ENSG00000185104|Q9UNN5-2|FAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2553100585938	2	551.782025	1101.5495	0.6176	0.00034078	2.9128	0.0016072	3.5304	0.001948	551.7836397545747	64.218	0.45688	64.218	63.997	64.454	0					24	16	2	0	0	0	0.16284	1	15926	15926		37.974	7.7492	1	131770	+		670	18356	390	390	759	759					0.0027834058598728006
AKYVTGYAGV	10	Unmodified	_AKYVTGYAGV_					0	0	0			REV__ENST00000551706.1_1_12:58145281-58145962:-|nuORF	REV__ENST00000551706.1_1_12:58145281-58145962:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.266357421875	2	514.7742	1027.53385	-0.27188	-0.00013996	0.57071	0.00029379	0.29883	0.00015383	514.774446403026	59.817	0.52724	59.912	59.578	60.105	0.095093					23	18	2	0	0	0	0.12843	1	14581	14581		41.84	1.8823	1	657680	+		671	15742	391	391	760	760					0.021180540689329064
ALAAARVEL	9	Unmodified	_ALAAARVEL_					0	0	0		nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2	nc|ENSG00000064651|P55011-3|SLC12A2	nc|ENSG00000064651|P55011-3|SLC12A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7666320800781	2	457.276909	912.539266	-0.06907	-3.1584E-05	2.4591	0.0011245	2.3901	0.0010929	457.27729399310437	16.372	0.4767	16.258	16.11	16.586	-0.11434					24	16	3	0	0	0	0.25879	1	1294	1294		4.756	1.4747	1	33752			672	791	392	392	761	761					0.07949777651424483
ALAAGQRR	8	Unmodified	_ALAAGQRR_					0	0	0			REV__ENSG00000130287|ENST00000252575|NCAN	REV__ENSG00000130287|ENST00000252575|NCAN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.75128173828125	2	421.751393	841.488233	-0.019077	-8.0458E-06	-0.002027	-8.5487E-07	-0.021104	-8.9006E-06	421.75133706543886	68.225	3.558	68.225	65.927	69.485	0					213	127	3	0	0	0	0.45169	1	17170	17170		5.2307	0.90143	1	517310	+		673	15446	393	393	762	762					0.06114873397223164
ALAAMRWRKKI	11	Unmodified	_ALAAMRWRKKI_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.6083984375	3	448.607936	1342.80198	0.23663	0.00010615	0.37428	0.0001679	0.6109	0.00027406	448.6081618723246	87.419	1.483	87.506	86.783	88.266	0.087097					212	73	3	0	0	0	0.47545	1	23065	23065		1.3296	1.3296	1	1021200			674	5729	394	394	763	763					0.14429075115572232
ALAAMRWRKKI	11	Unmodified	_ALAAMRWRKKI_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.6083068847656	3	448.607936	1342.80198	0.35393	0.00015878	0.40151	0.00018012	0.75544	0.0003389	448.60814547293876	87.48	2.5537	87.474	85.826	88.379	-0.0056229					336	115	4	0	0	0	0.44966	2	23068	22987;23068		4.7159	3.3863	1	1141000			675	5729	394	394	764;765	765					0.14429075115572232
ALAAQVFVR	9	Unmodified	_ALAAQVFVR_					0	0	0			REV__nc|ENSG00000260001|H3BV60|TGFBR3L	REV__nc|ENSG00000260001|H3BV60|TGFBR3L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.79071044921875	2	487.792727	973.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.545	1	75.513	75.013	76.013	-0.031487								0	0	0	0.23091	1	19400	19400		12.532	0.89125	1		+		676	19274	395	395	766	766					0.08305770405377189
ALADFLPVMK	10	Oxidation (M)	_ALADFLPVM(Oxidation (M))K_		ALADFLPVM(1)K		ALADFLPVM(48)K	0	0	1		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.821533203125	2	560.807185	1119.59982	0.72163	0.0004047	0.98656	0.00055327	1.7082	0.00095796	560.8081432721497	60.679	0.40938	60.679	60.441	60.851	0					24	14	2	0	0	0	0.10215	1	14833	14833		47.594	22.603	1	1122800			677	2427	396	396	767	767		297			0.04480126919474969
ALADFLPVMK	10	Oxidation (M)	_ALADFLPVM(Oxidation (M))K_		ALADFLPVM(1)K		ALADFLPVM(48)K	0	0	1		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8214721679688	2	560.807185	1119.59982	0.7194	0.00040345	0.42833	0.00024021	1.1477	0.00064366	560.8076219746646	60.596	0.3587	60.693	60.449	60.807	0.096989					20	12	2	0	0	0	0.10215	1	14790	14790		47.594	22.195	1	916220			678	2427	396	396	768	768		297			0.04480126919474969
ALAERCLAAL	10	Unmodified	_ALAERCLAAL_					0	0	0		ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7882080078125	2	515.789327	1029.5641	0.59085	0.00030476	-2.3655	-0.0012201	-1.7747	-0.00091536	515.7882463219441	47.716	0.49683	47.716	47.38	47.877	0					40	17	3	0	0	0	0.10145	1	10799	10799		47.749	7.7914	1	790480			679	4690	397	397	769	769					0.050500894624974535
ALALALALGP	10	Unmodified	_ALALALALGP_					0	0	0		ENSG00000120708|ENST00000442011|TGFBI;ENST00000504185.5_1_5:135364744-135380547:+|nuORF	ENSG00000120708|ENST00000442011|TGFBI	ENSG00000120708|ENST00000442011|TGFBI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.29205322265625	2	455.292028	908.569503	0.30767	0.00014008	-0.067266	-3.0626E-05	0.24041	0.00010946	455.2919002092406	40.513	1.2302	40.606	40.254	41.484	0.09267					101	45	3	0	0	0	0.35073	1	8765	8765		12.532	3.9383	1	1140200			680	2960	398	398	770	770					0.1115613631660608
ALALALASVL	10	Unmodified	_ALALALASVL_					0	0	0		nc|ENSG00000184347|O75094-2|SLIT3;nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3;ENST00000521130.1_1_5:168547122-168727722:-|nuORF;ENST00000518140.5_1_5:168199753-168727722:-|nuORF	nc|ENSG00000184347|O75094-2|SLIT3	nc|ENSG00000184347|O75094-2|SLIT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2867431640625	2	471.305136	940.595718	0.2232	0.0001052	-2.6306	-0.0012398	-2.4074	-0.0011346	471.30412747714223	50.17	0.46033	50.17	50.001	50.461	0					29	16	2	0	0	0	0.28434	1	11603	11603		25.399	3.8623	1	437730			681	7445	399	399	771	771					0.12304405488100656
ALALFQAQK	9	Unmodified	_ALALFQAQK_					0	0	0			REV__nc|ENSG00000172915|Q8NFP9|NBEA;REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.28216552734375	2	495.292559	988.570566	0.71657	0.00035491	0.24084	0.00011928	0.9574	0.00047419	495.2931562440298	47.175	0.58812	47.175	46.961	47.549	0					39	20	3	0	0	0	0.1669	1	10697	10697		28.487	1.6032	1	535310	+		682	17746;18836	400	400	772	772					0.0758235068550448
ALALLWWFWPL	11	Unmodified	_ALALLWWFWPL_					0	0	0		nc|ENSG00000169604|Q9H6X2-2|ANTXR1;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1	nc|ENSG00000169604|Q9H6X2-2|ANTXR1	nc|ENSG00000169604|Q9H6X2-2|ANTXR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.79248046875	3	472.600665	1414.78016	-0.082703	-3.9086E-05	-0.52002	-0.00024576	-0.60272	-0.00028485	472.6002807192642	34.254	0.50577	34.321	34.127	34.633	0.066704					41	17	3	0	0	0	0.33277	1	6671	6671		3.0723	0.44103	1	187620			683	6368	401	401	773	773					0.08936593638645718
ALALLWWFWPL	11	Unmodified	_ALALLWWFWPL_					0	0	0		nc|ENSG00000169604|Q9H6X2-2|ANTXR1;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1	nc|ENSG00000169604|Q9H6X2-2|ANTXR1	nc|ENSG00000169604|Q9H6X2-2|ANTXR1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	472.600665	1414.78016	-0.47502	-0.0002245	-0.0043969	-2.078E-06	-0.47942	-0.00022657	472.60063234737953	34.417	0.42464	34.417	34.193	34.618	0	0.041651	0.00032493	NaN	3.0723	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219730			684	6368	401	401							0.08936593638645718
ALALLWWFWPL	11	Unmodified	_ALALLWWFWPL_					0	0	0		nc|ENSG00000169604|Q9H6X2-2|ANTXR1;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1	nc|ENSG00000169604|Q9H6X2-2|ANTXR1	nc|ENSG00000169604|Q9H6X2-2|ANTXR1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	472.600665	1414.78016	-0.45525	-0.00021515	-0.24877	-0.00011757	-0.70402	-0.00033272	472.6004501951694	34.321	0.49845	34.387	34.149	34.648	0.06636	0.012374	-2.1542E-05	NaN	3.0723	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210620			685	6368	401	401							0.08936593638645718
ALALRRASL	9	Unmodified	_ALALRRASL_					0	0	0			REV__ENST00000454517.1_1_3:197350234-197354701:-|nuORF	REV__ENST00000454517.1_1_3:197350234-197354701:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.75347900390625	2	485.811451	969.608348	0.32235	0.0001566	-0.2337	-0.00011353	0.088654	4.3069E-05	485.81121918433297	62.652	0.35551	62.749	62.603	62.958	0.096985					20	12	2	0	0	0	0.25417	1	15489	15489		0	0	1	140050	+		686	13777	402	402	774	774					0.12232861670975126
ALANVSIEK	9	Unmodified	_ALANVSIEK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7744445800781	2	472.7742	943.533846	0.37537	0.00017747	0.43464	0.00020549	0.81001	0.00038295	472.7742948167733	34.055	0.52349	34.055	33.839	34.362	0					27	18	2	0	0	0	0.064268	1	6692	6692		47.594	3.822	1	291120			687	3408	403	403	775	775					0.059820540689429436
ALANVSIEK	9	Unmodified	_ALANVSIEK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7742919921875	2	472.7742	943.533846	0.65429	0.00030933	0.10552	4.9885E-05	0.7598	0.00035921	472.77411719093686	33.938	0.47654	34.005	33.814	34.29	0.06636					30	16	3	0	0	0	0.018042	1	6635	6635		67.081	17.148	1	238610			688	3408	403	403	776	776					0.059820540689429436
ALANVSIEK	9	Unmodified	_ALANVSIEK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.79248046875	2	472.7742	943.533846	0.10501	4.9645E-05	0.68844	0.00032548	0.79345	0.00037512	472.77452018599337	33.93	0.44442	33.997	33.824	34.268	0.0667					29	15	3	0	0	0	0.23749	1	6671	6671		20.415	3.3016	1	296430			689	3408	403	403	777	777					0.059820540689429436
ALAPDDRQIL	10	Unmodified	_ALAPDDRQIL_					0	0	0			REV__nc|ENSG00000170854|Q8IUF8-2|RIOX2	REV__nc|ENSG00000170854|Q8IUF8-2|RIOX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3079223632812	2	556.308938	1110.60332	0.1632	9.0789E-05	-0.93979	-0.00052281	-0.77659	-0.00043202	556.3082798674587	80.361	2.4792	80.426	79.622	82.101	0.065094					209	106	2	0	0	0	0.39009	1	20755	20755		5.2969	0	1	805360	+		690	17601	404	404	778	778					0.0524451301771478
ALAQALLTAK	10	Unmodified	_ALAQALLTAK_					0	0	0			REV__HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|1|1|sense	REV__HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|1|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8056640625	2	500.313492	998.612431	0.41696	0.00020861	0.2641	0.00013214	0.68107	0.00034075	500.31355285971836	65.544	0.60321	65.544	65.268	65.871	0					41	21	3	0	0	0	0.21126	1	16407	16407		31.268	0	1	486670	+		691	22758	405	405	779	779					0.11306906374034043
ALASLSHLK	9	Unmodified	_ALASLSHLK_					0	0	0		ENSG00000129009|ENST00000249842|ISLR	ENSG00000129009|ENST00000249842|ISLR	ENSG00000129009|ENST00000249842|ISLR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.28460693359375	2	470.284734	938.554916	0.23547	0.00011074	-0.37013	-0.00017407	-0.13466	-6.333E-05	470.28446611636207	24.067	0.48654	24.028	23.82	24.306	-0.038927					41	16	3	0	0	0	0.19747	1	3661	3661		24.021	1.2843	1	130620			692	3406	406	406	780	780					0.08318064168474848
ALCEKFFR	8	Unmodified	_ALCEKFFR_					0	0	0		ENST00000429116.1_3_16:460332-460977:+|nuORF;ENST00000461947.5_1_16:460332-462083:+|nuORF	ENST00000429116.1_3_16:460332-460977:+|nuORF	ENST00000429116.1_3_16:460332-460977:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.8061218261719	2	507.265487	1012.51642	-0.0011538	-5.8526E-07	-0.40189	-0.00020386	-0.40304	-0.00020445	507.26517013850093	28.382	0.60805	28.383	28.078	28.686	0.00046921					30	21	2	0	0	0	0.34167	1	4884	4884		7.2892	0	1	160170			693	10445	407	407	781	781					0.010664352623052764
ALDLKKLDYF	10	Unmodified	_ALDLKKLDYF_					0	0	0			REV__ENSG00000066185|ENST00000372565|ZMYND12	REV__ENSG00000066185|ENST00000372565|ZMYND12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.8780212402344	3	409.232418	1224.67542	-0.66793	-0.00027334	1.0553	0.00043186	0.38737	0.00015852	409.56713876447503	35.215	0.7725	35.215	35	35.773	0					51	27	3	0	0	0	0.31876	1	7132	7132		4.1895	0	1	286330	+		694	13677	408	408	782	782					0.0720742737139517
ALDMENFR	8	Unmodified	_ALDMENFR_					0	0	0		ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.80120849609375	2	498.234384	994.454216	0.38066	0.00018966	0.39278	0.0001957	0.77344	0.00038535	498.2343752452998	24.258	0.5299	24.185	23.997	24.527	-0.072557					36	17	3	0	0	0	0.32778	1	3702	3702		9.3474	2.6243	1	161350			695	4972	409	409	783	783					-0.04323335876688361
ALDRKVTPLQK	11	Unmodified	_ALDRKVTPLQK_					0	0	0		ENSG00000136270|ENST00000258770|TBRG4;nc|ENSG00000136270|Q969Z0-2|TBRG4	ENSG00000136270|ENST00000258770|TBRG4	ENSG00000136270|ENST00000258770|TBRG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.593994140625	3	423.59435	1267.76122	-0.18093	-7.6642E-05	-0.4266	-0.00018071	-0.60754	-0.00025735	423.59413447329945	25.571	0.6789	25.571	25.12	25.798	0					66	22	4	0	0	0	0.33432	1	4133	4133		19.144	0	1	645110			696	3964	410	410	784	784					0.13805012276952766
ALDYAGISI	9	Unmodified	_ALDYAGISI_					0	0	0		nc|ENSG00000163291|Q6TCH7-3|PAQR3;nc|ENSG00000163291|Q6TCH7-2|PAQR3;ENST00000512760.5_1_4:79841695-79860421:-|nuORF;ENSG00000163291|ENST00000512733|PAQR3	nc|ENSG00000163291|Q6TCH7-3|PAQR3	nc|ENSG00000163291|Q6TCH7-3|PAQR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.318603515625	2	461.74765	921.480748	0.5964	0.00027539	-0.12822	-5.9207E-05	0.46818	0.00021618	461.74751372641197	56.24	0.31503	56.318	56.17	56.485	0.078674					13	11	2	0	0	0	0.17611	1	13521	13521		14.838	3.198	1	316680			697	12795	411	411	785	785					0.01686676286283273
ALEAPPIVF	9	Unmodified	_ALEAPPIVF_					0	0	0			REV__nc|ENSG00000152092|O14525-3|ASTN1	REV__nc|ENSG00000152092|O14525-3|ASTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2848815917969	2	478.776211	955.537869	0.15796	7.5629E-05	0.10336	4.9486E-05	0.26132	0.00012512	478.776162089038	68.47	0.28795	68.542	68.33	68.618	0.071938					15	10	2	0	0	0	0.24739	1	17223	17223		8.5933	0	1	128980	+		698	16565	412	412	786	786					0.058321435626680795
ALEARLWD	8	Unmodified	_ALEARLWD_					0	0	0			REV__ENST00000429595.1_1_6:128556737-128643312:-|nuORF	REV__ENST00000429595.1_1_6:128556737-128643312:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7794494628906	2	487.258717	972.50288	0.33576	0.0001636	-0.05932	-2.8904E-05	0.27644	0.0001347	487.25871116598046	37.835	0.76557	37.926	37.388	38.153	0.090881					36	27	2	0	0	0	0.34167	1	7680	7680		3.9444	3.9444	1	159760	+		699	16601	413	413	787	787					0.015529007547002038
ALEHTVGPAI	10	Unmodified	_ALEHTVGPAI_					0	0	0			REV__nc|ENSG00000100299|P15289-2|ARSA	REV__nc|ENSG00000100299|P15289-2|ARSA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.27996826171875	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.86	1	90.86	90.36	91.36	0.0003891								0	0	0	0.36126	1	24090	24090		10.074	2.7847	1		+		700	14178	414	414	788	788					0.04173456443231771
ALEKSHVPIP	10	Unmodified	_ALEKSHVPIP_					0	0	0		ENST00000606615.1_1_5:114598446-114598485:+|nuORF	ENST00000606615.1_1_5:114598446-114598485:+|nuORF	ENST00000606615.1_1_5:114598446-114598485:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8181762695312	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.02	1	114	113.5	114.5	-0.019096								0	0	0	0.37807	1	29622	29622		2.9952	0.41776	1				701	12301	415	415	789	789					0.07702004885709357
ALELGLSAI	9	Unmodified	_ALELGLSAI_					0	0	0		ENST00000417983.5_1_9:94903864-94910221:+|nuORF	ENST00000417983.5_1_9:94903864-94910221:+|nuORF	ENST00000417983.5_1_9:94903864-94910221:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.765869140625	2	443.765843	885.517133	0.50465	0.00022395	-0.3016	-0.00013384	0.20305	9.0108E-05	443.76562305512255	65.835	1.1396	65.835	65.405	66.545	0					115	40	4	0	0	0	0.010938	1	16405	16405		77.984	3.5616	1	3640500			702	10344	416	416	790	790					0.0697955318298682
ALELGLSAI	9	Unmodified	_ALELGLSAI_					0	0	0		ENST00000417983.5_1_9:94903864-94910221:+|nuORF	ENST00000417983.5_1_9:94903864-94910221:+|nuORF	ENST00000417983.5_1_9:94903864-94910221:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.7659606933594	2	443.765843	885.517133	0.29446	0.00013067	-0.084773	-3.7619E-05	0.20969	9.3052E-05	443.76572334845457	65.672	1.1693	65.761	65.38	66.549	0.088882					109	42	4	0	0	0	0.010938	1	16367	16367		77.984	3.5616	1	3453900			703	10344	416	416	791	791					0.0697955318298682
ALEQEGKKT	9	Unmodified	_ALEQEGKKT_					0	0	0			REV__nc|ENSG00000115902|P43007-2|SLC1A4	REV__nc|ENSG00000115902|P43007-2|SLC1A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7953796386719	2	502.274564	1002.53457	0.13048	6.5539E-05	1.1519	0.00057859	1.2824	0.00064413	502.2751551688378	16.359	0.45681	16.245	16.075	16.532	-0.11434					26	15	2	0	0	0	0.25431	1	1339	1339		9.3831	2.0939	1	29392	+		704	14900	417	417	792	792					0.03340848718016787
ALERTKKQ	8	Unmodified	_ALERTKKQ_					0	0	0			REV__ENSG00000130158|ENST00000294618|DOCK6	REV__ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7535400390625	2	487.293091	972.571629	0.064786	3.157E-05	-0.049031	-2.3893E-05	0.015755	7.6773E-06	487.2928283178169	15.726	0.26217	15.616	15.491	15.753	-0.10982					12	8	2	0	0	0	0.34408	1	1094	1094		2.3027	0	1	30074	+		705	15439	418	418	793	793					0.08424565054417599
ALESSPSLHS	10	Unmodified	_ALESSPSLHS_					0	0	0		ENST00000483151.5_1_6:33259881-33261471:-|nuORF;ENSG00000237441|ENST00000497454|RGL2	ENST00000483151.5_1_6:33259881-33261471:-|nuORF	ENST00000483151.5_1_6:33259881-33261471:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.276611328125	2	514.256371	1026.49819	0.32971	0.00016956	1.388	0.0007138	1.7177	0.00088336	514.2571195282334	67.787	0.46169	67.787	67.561	68.022	0					21	15	2	0	0	0	0.29038	1	17014	17014		18.146	8.7989	1	150300			706	8505	419	419	794	794					-0.014000281787048152
ALEVQFIIT	9	Unmodified	_ALEVQFIIT_					0	0	0		nc|ENSG00000100462|O14744-4|PRMT5	nc|ENSG00000100462|O14744-4|PRMT5	nc|ENSG00000100462|O14744-4|PRMT5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2837524414062	2	517.30005	1032.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.403	1	81.379	80.879	81.879	-0.02404								0	0	0	0.22377	1	21184	21184		14.838	0	1				707	12615	420	420	795	795					0.07055797762859584
ALEYHCVFC	9	Unmodified	_ALEYHCVFC_					0	0	0			REV__FUT11|p.D393H|1|0.31|ENSG00000196968|chr10:73773658-73773658|G/C|missense_variant	REV__FUT11|p.D393H|1|0.31|ENSG00000196968|chr10:73773658-73773658|G/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7587280273438	2	542.733163	1083.45177	0.35126	0.00019064	1.3179	0.00071526	1.6691	0.0009059	542.7343765533643	23.172	0.61852	23.085	22.762	23.381	-0.08761					32	21	2	0	0	0	0.26168	1	3274	3274		1.8442	0.51471	1	67192	+		708	22688	421	421	796	796					-0.08661507606007035
ALEYHCVFC	9	Unmodified	_ALEYHCVFC_					0	0	0			REV__FUT11|p.D393H|1|0.31|ENSG00000196968|chr10:73773658-73773658|G/C|missense_variant	REV__FUT11|p.D393H|1|0.31|ENSG00000196968|chr10:73773658-73773658|G/C|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	542.733163	1083.45177	0.52613	0.00028555	1.5387	0.00083509	2.0648	0.0011206	542.7342962574386	23.162	0.46008	23.117	22.898	23.358	-0.044867	-0.00033769	0.00018099	NaN	1.8442	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67268	+		709	22688	421	421							-0.08661507606007035
ALFEIALRK	9	Unmodified	_ALFEIALRK_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2613525390625	2	530.829309	1059.64407	1.1067	0.00058748	-0.56059	-0.00029758	0.54614	0.00028991	530.8289882048205	50.344	0.45255	50.365	50.126	50.578	0.020691					21	16	2	0	0	0	0.22143	1	11648	11648		24.991	10.153	1	196560			710	2426	422	422	797	797					0.11662899127986748
ALFEQSNF	8	Unmodified	_ALFEQSNF_					0	0	0			REV__L1MA4_dup7615|chr12:52101426-52101658:+|1.2203670210920945|0.1954360776477686|2.64|530.0|4|1|sense	REV__L1MA4_dup7615|chr12:52101426-52101658:+|1.2203670210920945|0.1954360776477686|2.64|530.0|4|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2763977050781	2	478.229625	954.444697	0.40886	0.00019553	-1.203	-0.00057531	-0.79413	-0.00037978	478.2281507985191	64.688	0.42842	64.781	64.582	65.01	0.09288					26	15	3	0	0	0	0.33995	1	16136	16136		15.768	6.4208	1	90951	+		711	22783	423	423	798	798					-0.03434780890563616
ALFHLSRPWT	10	Unmodified	_ALFHLSRPWT_					0	0	0			REV__ENST00000371021.4_1_10:99080110-99080479:+|nuORF	REV__ENST00000371021.4_1_10:99080110-99080479:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.893798828125	3	409.892619	1226.65603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.912	1	15.849	15.349	16.349	-0.062534								0	0	0	0.37666	1	1168	1168		3.5871	0	1		+		712	20395	424	424	799	799					0.05176515871153242
ALFKHSKK	8	Unmodified	_ALFKHSKK_					0	0	0		ENSG00000140505|ENST00000343932|CYP1A2	ENSG00000140505|ENST00000343932|CYP1A2	ENSG00000140505|ENST00000343932|CYP1A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7878112792969	2	479.795269	957.575986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.191	1	39.191	38.691	39.691	0								0	0	0	0.35663	1	8244	8244		11.64	2.2572	1				713	4311	425	425	800	800					0.09550074267997388
ALFLDRGFA	9	Unmodified	_ALFLDRGFA_					0	0	0			REV__ENST00000536373.5_1_18:33718798-33725056:+|nuORF	REV__ENST00000536373.5_1_18:33718798-33725056:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2894287109375	2	505.276909	1008.53927	0.14688	7.4213E-05	-2.1749	-0.0010989	-2.028	-0.0010247	505.276986409766	59.217	1.7542	59.308	58.792	60.547	0.091301					100	63	3	0	0	0	0.23783	1	14485	14485		18.135	1.0221	1	702300	+		714	15697	426	426	801	801					0.035337776514325014
ALFLEELGE	9	Unmodified	_ALFLEELGE_					0	0	0		ENST00000587568.5_1_2:179387885-179396103:+|nuORF	ENST00000587568.5_1_2:179387885-179396103:+|nuORF	ENST00000587568.5_1_2:179387885-179396103:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.7659912109375	2	510.76604	1019.51753	-0.014873	-7.5964E-06	1.1765	0.0006009	1.1616	0.0005933	510.76650387455896	13.323	0.54015	13.323	13.174	13.714	0					34	18	2	0	0	0	0.31038	1	376	376		7.2892	0	1	447980			715	12130	427	427	802	802					0.008549281121986496
ALFLHGLSI	9	Unmodified	_ALFLHGLSI_					0	0	0		ENST00000588556.1_1_16:4942976-4943674:-|nuORF	ENST00000588556.1_1_16:4942976-4943674:-|nuORF	ENST00000588556.1_1_16:4942976-4943674:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.844	1	43.844	43.344	44.344	0								0	0	0	0.16935	1	9666	9666		30.225	2.596	1				716	12148	428	428	803	803					0.07875252173846548
ALFLTLTTK	9	Unmodified	_ALFLTLTTK_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.3104553222656	2	504.310418	1006.60628	0.23597	0.000119	-0.098329	-4.9588E-05	0.13764	6.9413E-05	504.31038422481214	59.233	1.1147	59.233	58.891	60.006	0					107	39	4	0	0	0	3.6949E-07	3	14383	14383;14433;14482		165.72	115.79	1	11425000			717	8105	429	429	804;805;806	804					0.1032438814249872
ALFLTLTTK	9	Unmodified	_ALFLTLTTK_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.310546875	2	504.310418	1006.60628	0.29241	0.00014746	-0.14653	-7.3894E-05	0.14588	7.357E-05	504.31035883300575	59.101	1.4747	59.193	58.764	60.239	0.091301					154	52	5	0	0	0	3.6949E-07	3	14327	14327;14376;14426		165.72	107.04	1	11645000			718	8105	429	429	807;808;809	807					0.1032438814249872
ALFLTLTTK	9	Unmodified	_ALFLTLTTK_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.3104553222656	2	504.310418	1006.60628	0.44314	0.00022348	-0.49485	-0.00024956	-0.05171	-2.6078E-05	504.31015844173	59.178	1.2176	59.163	58.806	60.023	-0.014267					125	42	5	0	0	0	3.6949E-07	3	14386	14386;14436;14486		165.72	107.04	1	11672000			719	8105	429	429	810;811;812	810					0.1032438814249872
ALFPFWSF	8	Unmodified	_ALFPFWSF_					0	0	0			REV__ENST00000493894.1_1_22:29661211-29661415:-|nuORF	REV__ENST00000493894.1_1_22:29661211-29661415:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.8135681152344	2	507.757821	1013.50109	0.3115	0.00015817	-2.8608	-0.0014526	-2.5493	-0.0012944	508.2579629996996	52.151	0.13831	52.202	52.144	52.282	0.050575					6	4	2	0	0	0	0.34147	1	12222	12222		11.114	5.8838	1	140680	+		720	21646	430	430	813	813					-0.005121082632399521
ALFPTSAVK	9	Unmodified	_ALFPTSAVK_					0	0	0			REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.2890625	2	467.273835	932.533118	-0.22088	-0.00010321	0.55018	0.00025708	0.3293	0.00015387	467.27398936972594	73.626	0.55774	73.626	73.335	73.893	0					47	19	3	0	0	0	0.14205	2	18802	18802;18879		32.117	7.4431	1	722790	+		721	16070	431	431	814;815	814					0.06415259419907215
ALFPTSAVK	9	Unmodified	_ALFPTSAVK_					0	0	0			REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.2890319824219	2	467.273835	932.533118	0.14201	6.6359E-05	0.12973	6.0618E-05	0.27174	0.00012698	467.27383517131307	73.666	0.51281	73.635	73.397	73.91	-0.030655					42	18	3	0	0	0	0.193	1	18806	18806		24.674	6.5389	1	719030	+		722	16070	431	431	816	816					0.06415259419907215
ALFSWDLPL	9	Unmodified	_ALFSWDLPL_					0	0	0		ENST00000298573.8_1_12:12633165-12633258:-|nuORF	ENST00000298573.8_1_12:12633165-12633258:-|nuORF	ENST00000298573.8_1_12:12633165-12633258:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8170166015625	2	531.286943	1060.55933	0.47258	0.00025107	1.3166	0.00069949	1.7892	0.00095056	531.2872717596314	79.394	0.96454	79.456	79.141	80.106	0.061417					108	39	4	0	0	0	0.25066	1	20654	20654		7.2892	7.2892	1	3532400			723	9210	432	432	817	817					0.031475285913757034
ALFSWDLPL	9	Unmodified	_ALFSWDLPL_					0	0	0		ENST00000298573.8_1_12:12633165-12633258:-|nuORF	ENST00000298573.8_1_12:12633165-12633258:-|nuORF	ENST00000298573.8_1_12:12633165-12633258:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.286943	1060.55933	0.58579	0.00031122	1.3091	0.0006955	1.8949	0.0010067	531.2872282926593	79.474	0.97782	79.474	79.119	80.097	0	0.010858	4.0235E-05	NaN	7.2892	101	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3150600			724	9210	432	432							0.031475285913757034
ALFSWDLPL	9	Unmodified	_ALFSWDLPL_					0	0	0		ENST00000298573.8_1_12:12633165-12633258:-|nuORF	ENST00000298573.8_1_12:12633165-12633258:-|nuORF	ENST00000298573.8_1_12:12633165-12633258:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	531.286943	1060.55933	0.60965	0.0003239	1.1865	0.00063037	1.7961	0.00095427	531.2871736128957	79.488	1.353	79.46	79.05	80.403	-0.028931	-0.0035405	-9.0028E-05	NaN	7.2892	128	50	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3518100			725	9210	432	432							0.031475285913757034
ALFTAEMLLK	10	Unmodified	_ALFTAEMLLK_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;CACNA1C|p.V939Ffs*12|1|0.13|ENSG00000151067|chr12:2597251-2597251|G/-|frameshift_variant	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8229370117188	2	568.822835	1135.63112	0.36674	0.00020861	-1.5573	-0.00088585	-1.1906	-0.00067724	568.822371174742	59.052	1.3347	59.143	58.708	60.043	0.091301					166	47	5	0	0	0	0.033744	1	14366	14366		62.573	7.7991	1	20273000			726	4934	433	433	818	818					0.06872699953578376
ALFYKALEQK	10	Unmodified	_ALFYKALEQK_					0	0	0			REV__ENSG00000157005|ENST00000287641|SST	REV__ENSG00000157005|ENST00000287641|SST	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5149230957031	3	404.23253	1209.67576	-0.36831	-0.00014888	-1.3008	-0.00052581	-1.6691	-0.00067469	404.2320321128444	16.186	0.66564	16.071	15.921	16.586	-0.11434					32	22	2	0	0	0	0.31538	1	1397	1397		12.873	5.8355	1	60859	+		727	16766	434	434	819	819					0.0793084709125651
ALGALATLNL	10	Unmodified	_ALGALATLNL_					0	0	0		nc|ENSG00000100399|Q6NUI6-2|CHADL;ENSG00000100399|ENST00000216241|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7493591308594	2	478.792392	955.570232	0.3646	0.00017457	-0.22729	-0.00010882	0.13731	6.5741E-05	478.79213699101564	44.185	0.8697	44.257	43.784	44.654	0.071495					45	32	2	0	0	0	0.2266	1	9722	9722		34.402	5.3201	1	408480			728	1588	435	435	820	820					0.09066930965661868
ALGHSGFEM	9	Unmodified	_ALGHSGFEM_					0	0	0		nc|ENSG00000135318|P21589-2|NT5E;ENSG00000135318|ENST00000257770|NT5E	nc|ENSG00000135318|P21589-2|NT5E	nc|ENSG00000135318|P21589-2|NT5E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.3133239746094	2	474.715827	947.417102	0.21236	0.00010081	0.291	0.00013814	0.50336	0.00023895	474.71590041446643	62.73	0.72393	62.721	62.441	63.165	-0.0085526					42	26	2	0	0	0	0.25291	1	15426	15426		9.3474	2.9933	1	407290			729	3861	436	436	821	821					-0.05871007422445018
ALGIAHLIV	9	Unmodified	_ALGIAHLIV_					0	0	0		nc|ENSG00000065833|P48163-2|ME1;ENSG00000065833|ENST00000369705|ME1	nc|ENSG00000065833|P48163-2|ME1	nc|ENSG00000065833|P48163-2|ME1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7920837402344	2	453.792195	905.569838	0.222	0.00010074	-0.17499	-7.9408E-05	0.047014	2.1335E-05	453.79206717019986	62.484	1.1776	62.484	62.187	63.364	0					86	43	3	0	0	0	0.16905	1	15425	15425		28.173	8.7342	1	708050			730	826	437	437	822	822					0.11327556036462738
ALGIAHLIV	9	Unmodified	_ALGIAHLIV_					0	0	0		nc|ENSG00000065833|P48163-2|ME1;ENSG00000065833|ENST00000369705|ME1	nc|ENSG00000065833|P48163-2|ME1	nc|ENSG00000065833|P48163-2|ME1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7922058105469	2	453.792195	905.569838	0.24985	0.00011338	-0.1121	-5.0871E-05	0.13774	6.2507E-05	453.7920516815861	62.447	1.3118	62.544	62.2	63.512	0.096985					79	47	3	0	0	0	0.16905	2	15392	15392;15446		28.173	7.302	1	665350			731	826	437	437	823;824	823					0.11327556036462738
ALGIAHLIV	9	Unmodified	_ALGIAHLIV_					0	0	0		nc|ENSG00000065833|P48163-2|ME1;ENSG00000065833|ENST00000369705|ME1	nc|ENSG00000065833|P48163-2|ME1	nc|ENSG00000065833|P48163-2|ME1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.7923278808594	2	453.792195	905.569838	0.20333	9.227E-05	-0.13062	-5.9274E-05	0.072712	3.2996E-05	453.7921176016608	62.477	1.2908	62.469	62.118	63.408	-0.0085526					94	47	3	0	0	0	0.21902	2	15373	15373;15417		20.871	2.7362	1	634270			732	826	437	437	825;826	825					0.11327556036462738
ALGKKSPPA	9	Unmodified	_ALGKKSPPA_					0	0	0		ENST00000445551.1_1_1:47899888-47899996:-|nuORF	ENST00000445551.1_1_1:47899888-47899996:-|nuORF	ENST00000445551.1_1_1:47899888-47899996:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.77984619140625	2	434.766178	867.517802	0.072118	3.1355E-05	-1.4016	-0.00060935	-1.3294	-0.000578	434.76595514437435	39.041	0.27646	39.141	38.986	39.262	0.099407					12	9	2	0	0	0	0.25989	1	8181	8181		14.838	1.3304	1	121890			733	10587	438	438	827	827					0.07874392622704818
ALGLFGNPP	9	Unmodified	_ALGLFGNPP_					0	0	0			REV__ENST00000527583.1_1_11:33097726-33097810:-|nuORF	REV__ENST00000527583.1_1_11:33097726-33097810:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7455139160156	2	443.245078	884.475603	-0.010568	-4.6842E-06	-3.504	-0.0015531	-3.5146	-0.0015578	443.24378883912954	25.752	0.59319	25.73	25.274	25.867	-0.022236					40	20	3	0	0	0	0.24739	1	4037	4037		13.508	2.3934	1	180230	+		734	21978	439	439	828	828					0.0287441721433197
ALGLFGNPP	9	Unmodified	_ALGLFGNPP_					0	0	0			REV__ENST00000527583.1_1_11:33097726-33097810:-|nuORF	REV__ENST00000527583.1_1_11:33097726-33097810:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	443.245078	884.475603	0.083658	3.7081E-05	-4.4349	-0.0019658	-4.3512	-0.0019287	443.2430734040921	25.62	0.4614	25.62	25.384	25.846	0	-0.035804	-7.2853E-05	NaN	13.508	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146170	+		735	21978	439	439							0.0287441721433197
ALGLFGNPP	9	Unmodified	_ALGLFGNPP_					0	0	0			REV__ENST00000527583.1_1_11:33097726-33097810:-|nuORF	REV__ENST00000527583.1_1_11:33097726-33097810:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	443.245078	884.475603	-0.14148	-6.2712E-05	-4.4087	-0.0019541	-4.5502	-0.0020169	443.24305523324034	25.668	0.40078	25.617	25.4	25.801	-0.05088	-0.038488	-4.9631E-05	NaN	13.508	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185980	+		736	21978	439	439							0.0287441721433197
ALGNNAAYAF	10	Unmodified	_ALGNNAAYAF_					0	0	0		ARMCX3|p.L251Yfs*14|1|0.26|ENSG00000102401|chrX:101625729-101625729|T/-|frameshift_variant;ENSG00000102401|ENST00000471229|ARMCX3	ARMCX3|p.L251Yfs*14|1|0.26|ENSG00000102401|chrX:101625729-101625729|T/-|frameshift_variant	ARMCX3|p.L251Yfs*14|1|0.26|ENSG00000102401|chrX:101625729-101625729|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.82135009765625	2	506.248349	1010.48214	0.25581	0.0001295	-0.33233	-0.00016824	-0.076526	-3.8741E-05	506.2480555197894	55.402	0.78877	55.402	55.119	55.907	0					46	28	2	0	0	0	0.28898	1	13326	13326		23.148	13.801	1	855260			737	56	440	440	829	829					-0.022676896249663514
ALGNNAAYAF	10	Unmodified	_ALGNNAAYAF_					0	0	0		ARMCX3|p.L251Yfs*14|1|0.26|ENSG00000102401|chrX:101625729-101625729|T/-|frameshift_variant;ENSG00000102401|ENST00000471229|ARMCX3	ARMCX3|p.L251Yfs*14|1|0.26|ENSG00000102401|chrX:101625729-101625729|T/-|frameshift_variant	ARMCX3|p.L251Yfs*14|1|0.26|ENSG00000102401|chrX:101625729-101625729|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.82135009765625	2	506.248349	1010.48214	0.5036	0.00025495	-0.37547	-0.00019008	0.12813	6.4866E-05	506.24801837231706	55.357	0.63897	55.428	55.112	55.751	0.070885					50	23	3	0	0	0	0.31482	1	13306	13306		11.64	0	1	850150			738	56	440	440	830	830					-0.022676896249663514
ALGNYHRF	8	Unmodified	_ALGNYHRF_					0	0	0		ENSG00000167615|ENST00000326764|LENG8;nc|ENSG00000167615|Q96PV6-1|LENG8	ENSG00000167615|ENST00000326764|LENG8	ENSG00000167615|ENST00000326764|LENG8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.26922607421875	2	489.251226	976.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.414	1	67.492	66.992	67.992	0.078041								0	0	0	0.35779	1	16919	16919		11.114	1.767	1				739	6190	441	441	831	831					-0.0012854632262815358
ALGPRQRQRR	10	Unmodified	_ALGPRQRQRR_					0	0	0			REV__ENST00000395379.5_1_8:133787694-133790038:+|nuORF	REV__ENST00000395379.5_1_8:133787694-133790038:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2499694824219	3	413.2498	1236.72757	0.26273	0.00010857	1.8108	0.00074832	2.0735	0.00085689	413.2508421883753	91.671	1.2199	91.762	91.093	92.313	0.090675					174	84	3	0	0	0	0.39935	1	24363	24363		1.7423	0.63252	1	617610	+		740	20633	442	442	832	832					0.11867448348380094
ALGPRQRQRR	10	Unmodified	_ALGPRQRQRR_					0	0	0			REV__ENST00000395379.5_1_8:133787694-133790038:+|nuORF	REV__ENST00000395379.5_1_8:133787694-133790038:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	413.2498	1236.72757	-0.062702	-2.5912E-05	2.0662	0.00085386	2.0035	0.00082795	413.2510517363109	91.773	1.3242	91.773	91.224	92.548	0	0.0034027	0.0004538	NaN	1.7423	197	97	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	657850	+		741	20633	442	442							0.11867448348380094
ALGPRQRQRR	10	Unmodified	_ALGPRQRQRR_					0	0	0			REV__ENST00000395379.5_1_8:133787694-133790038:+|nuORF	REV__ENST00000395379.5_1_8:133787694-133790038:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	413.2498	1236.72757	0.26273	0.00010857	1.8108	0.00074832	2.0735	0.00085689	413.2508421883753	91.671	1.2199	91.762	91.093	92.313	0.090675	-0.0082683	0.00013717	NaN	1.7423	174	84	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	617610	+		742	20633	442	442							0.11867448348380094
ALGPRQRQRR	10	Unmodified	_ALGPRQRQRR_					0	0	0			REV__ENST00000395379.5_1_8:133787694-133790038:+|nuORF	REV__ENST00000395379.5_1_8:133787694-133790038:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	413.2498	1236.72757	0.37432	0.00015469	1.2498	0.00051648	1.6241	0.00067117	413.2505197590862	91.774	1.0396	91.775	91.255	92.295	0.00046539	0.0048656	-0.00055833	NaN	1.7423	139	66	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	801880	+		743	20633	442	442							0.11867448348380094
ALGRLLQFLF	10	Unmodified	_ALGRLLQFLF_					0	0	0			REV__ENST00000522234.5_1_X:47085656-47085860:+|nuORF	REV__ENST00000522234.5_1_X:47085656-47085860:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3435668945312	2	589.358234	1176.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.4	1	100.4	99.896	100.9	-0.006897								0	0	0	0.37581	1	26861	26861		3.9444	0.3479	1		+		744	21912	443	443	833	833					0.12063161053401927
ALGTFVQRRL	10	Unmodified	_ALGTFVQRRL_					0	0	0		nc|ENSG00000163817|Q9NP91-2|SLC6A20;ENSG00000163817|ENST00000358525|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.2996215820312	2	580.848564	1159.68258	0.40511	0.00023531	-1.5312	-0.00088938	-1.1261	-0.00065407	580.847472949721	33.601	0.24783	33.601	33.426	33.674	0					11	8	2	0	0	0	0.31358	1	6521	6521		9.3831	0	1	90671			745	5738	444	444	834	834					0.10912204762507827
ALHIPPGKGRE	11	Unmodified	_ALHIPPGKGRE_					0	0	0		nc|ENSG00000181652|Q674R7-3|ATG9B	nc|ENSG00000181652|Q674R7-3|ATG9B	nc|ENSG00000181652|Q674R7-3|ATG9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8381958007812	2	587.838197	1173.66184	0.27665	0.00016262	-0.19325	-0.0001136	0.083397	4.9024E-05	587.8380286970695	24.266	0.57561	24.266	23.973	24.548	0					47	19	3	0	0	0	0.46475	1	3758	3758		2.7352	0.89096	1	162190			746	12870	445	445	835	835					0.08195614382839267
ALHIPPGKGRE	11	Unmodified	_ALHIPPGKGRE_					0	0	0		nc|ENSG00000181652|Q674R7-3|ATG9B	nc|ENSG00000181652|Q674R7-3|ATG9B	nc|ENSG00000181652|Q674R7-3|ATG9B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	587.838197	1173.66184	0.32362	0.00019024	-0.25033	-0.00014715	0.073294	4.3085E-05	587.8380512235078	24.367	0.52647	24.295	24.085	24.612	-0.072559	-0.015821	-0.0001258	NaN	2.7352	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137620			747	12870	445	445							0.08195614382839267
ALHIPPGKGRE	11	Unmodified	_ALHIPPGKGRE_					0	0	0		nc|ENSG00000181652|Q674R7-3|ATG9B	nc|ENSG00000181652|Q674R7-3|ATG9B	nc|ENSG00000181652|Q674R7-3|ATG9B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	587.838197	1173.66184	0.23976	0.00014094	-0.051377	-3.0201E-05	0.18838	0.00011074	587.8381824189719	24.41	0.53715	24.371	24.108	24.646	-0.038927	0.060767	0.0001081	NaN	2.7352	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153480			748	12870	445	445							0.08195614382839267
ALIAPCLLRLF	11	Unmodified	_ALIAPCLLRLF_					0	0	0			REV__nc|ENSG00000105122|Q86YV0-2|RASAL3	REV__nc|ENSG00000105122|Q86YV0-2|RASAL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.9150695800781	3	410.586138	1228.73659	0.037911	1.5566E-05	1.8398	0.00075538	1.8777	0.00077095	410.58681838302704	48.814	0.49539	48.814	48.582	49.077	0					18	17	2	0	0	0	0.33182	1	11231	11231		5.4027	1.2132	1	350830	+		749	14437	446	446	836	836					0.13136660869849948
ALIGTASPFFI	11	Unmodified	_ALIGTASPFFI_					0	0	0			REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__ENSG00000070915|ENST00000563236|SLC12A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3065185546875	2	568.82115	1135.62775	0.36674	0.00020861	1.4056	0.00079956	1.7724	0.0010082	568.822371174742	59.052	1.3347	59.143	58.708	60.043	0.091301					166	47	5	0	0	0	0.22366	2	14257	14257;14322		29.082	2.2827	1	20273000	+		750	13740	447	447	837;838	837					0.06535773171253823
ALIRSMLL	8	Unmodified	_ALIRSMLL_					0	0	0		ENSG00000170967|ENST00000302259|DDI1	ENSG00000170967|ENST00000302259|DDI1	ENSG00000170967|ENST00000302259|DDI1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7844543457031	2	458.786056	915.557558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.053	1	56.123	55.623	56.623	0.070885								0	0	0	0.25356	1	13426	13426		36.044	3.9272	1				751	6502	448	448	839	839					0.09640196301768356
ALIVGTKLLS	10	Unmodified	_ALIVGTKLLS_					0	0	0			REV__ENST00000354204.10_1_2:97260765-97261026:-|nuORF	REV__ENST00000354204.10_1_2:97260765-97261026:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.81341552734375	2	507.831517	1013.64848	0.26124	0.00013267	-1.7303	-0.00087872	-1.4691	-0.00074606	507.83053181672415	52.038	0.48676	52.038	51.809	52.296	0					27	17	2	0	0	0	0.18128	1	12245	12245		34.932	7.3033	1	360280	+		752	20170	449	449	840	840					0.14220363550907678
ALIVGTKLLS	10	Unmodified	_ALIVGTKLLS_					0	0	0			REV__ENST00000354204.10_1_2:97260765-97261026:-|nuORF	REV__ENST00000354204.10_1_2:97260765-97261026:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.8135681152344	2	507.831517	1013.64848	0.31301	0.00015896	-1.7698	-0.00089876	-1.4568	-0.0007398	507.8303469634964	52.075	0.43585	52.126	51.874	52.309	0.050575					28	15	3	0	0	0	0.23397	1	12222	12222		28.495	4.7047	1	335420	+		753	20170	449	449	841	841					0.14220363550907678
ALIVGTKLLS	10	Unmodified	_ALIVGTKLLS_					0	0	0			REV__ENST00000354204.10_1_2:97260765-97261026:-|nuORF	REV__ENST00000354204.10_1_2:97260765-97261026:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.3086853027344	2	507.831517	1013.64848	0.067849	3.4456E-05	-0.90425	-0.00045921	-0.8364	-0.00042475	507.83085774864753	52.034	0.42834	52.033	51.876	52.305	-0.00080872					33	15	3	0	0	0	0.29112	1	12163	12163		24.991	6.6179	1	371090	+		754	20170	449	449	842	842					0.14220363550907678
ALIWLLKKM	9	Unmodified	_ALIWLLKKM_					0	0	0			REV__ENST00000295736.9_1_3:27493937-27493985:-|nuORF	REV__ENST00000295736.9_1_3:27493937-27493985:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7548828125	2	558.354105	1114.69366	0.05927	3.3093E-05	-1.0407	-0.00058105	-0.98138	-0.00054796	558.3535212659782	15.796	0.28553	15.732	15.605	15.89	-0.064414					13	9	2	0	0	0	0.26251	1	1115	1115		0.6015	0	1	29454	+		755	19780	450	450	843	843					0.1408989081241998
ALKIKLTNKHF	11	Unmodified	_ALKIKLTNKHF_					0	0	0		ENST00000468868.1_1_7:48017962-48019116:-|nuORF;HUS1|p.L192*|1|0.16|ENSG00000136273|chr7:47969284-47969284|A/-|frameshift_variant;nc|ENSG00000136273|O60921-2|HUS1;ENSG00000136273|ENST00000258774|HUS1	ENST00000468868.1_1_7:48017962-48019116:-|nuORF	ENST00000468868.1_1_7:48017962-48019116:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.7463684082031	3	438.27484	1311.80269	0.15884	6.9616E-05	-0.14972	-6.5621E-05	0.0091158	3.9952E-06	438.609216423408	37.958	0.56113	37.958	37.616	38.177	0					26	19	2	0	0	0	0.3322	1	7819	7819		4.7159	2.632	1	148740			756	3966	451	451	844	844					0.15926193036239056
ALKKGWLY	8	Unmodified	_ALKKGWLY_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2689514160156	2	489.792195	977.569838	0.22719	0.00011128	-0.64938	-0.00031806	-0.42219	-0.00020679	489.79188851764235	67.58	0.46511	67.564	67.292	67.757	-0.016296					19	15	2	0	0	0	0.34185	1	17003	17003		10.183	0	1	97141			757	12859	452	452	845	845					0.08015556036457383
ALKKLMRFHH	10	Unmodified	_ALKKLMRFHH_					0	0	0		ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.8749389648438	2	640.874059	1279.73357	0.57429	0.00036805	0.50895	0.00032617	1.0832	0.00069422	640.8743883371677	95.316	1.1193	95.314	94.834	95.953	-0.0020142					154	102	2	0	0	0	0.41642	1	25541	25541		0.45834	0.45834	1	146980			758	8253	453	453	846	846					0.10488830535746274
ALKKLMRFHH	10	Unmodified	_ALKKLMRFHH_					0	0	0		ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	640.874059	1279.73357	0.38594	0.00024734	0.82707	0.00053005	1.213	0.00077739	640.8745704562867	95.23	1.4234	95.313	94.781	96.204	0.082779	0.039683	0.00014722	NaN	0.45834	158	126	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173170			759	8253	453	453							0.10488830535746274
ALKPNYIP	8	Unmodified	_ALKPNYIP_					0	0	0		ENSG00000183378|ENST00000533663|OVCH2;nc|ENSG00000183378|Q7RTZ1|OVCH2	ENSG00000183378|ENST00000533663|OVCH2	ENSG00000183378|ENST00000533663|OVCH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.8692626953125	2	458.268553	914.522553	0.38931	0.00017841	-0.71782	-0.00032895	-0.32851	-0.00015055	458.2681682604101	20.641	0.48482	20.531	20.379	20.864	-0.11003					19	16	2	0	0	0	0.34319	1	2697	2697		5.7604	1.0044	1	48871			760	7364	454	454	847	847					0.06187276765456318
ALKPNYIP	8	Unmodified	_ALKPNYIP_					0	0	0		ENSG00000183378|ENST00000533663|OVCH2;nc|ENSG00000183378|Q7RTZ1|OVCH2	ENSG00000183378|ENST00000533663|OVCH2	ENSG00000183378|ENST00000533663|OVCH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	458.268553	914.522553	0.13493	6.1834E-05	-0.88411	-0.00040516	-0.74918	-0.00034332	458.26815402452013	20.432	0.42389	20.432	20.285	20.709	0	-0.045606	-0.00010913	NaN	5.7604	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64417			761	7364	454	454							0.06187276765456318
ALKPNYIP	8	Unmodified	_ALKPNYIP_					0	0	0		ENSG00000183378|ENST00000533663|OVCH2;nc|ENSG00000183378|Q7RTZ1|OVCH2	ENSG00000183378|ENST00000533663|OVCH2	ENSG00000183378|ENST00000533663|OVCH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	458.268553	914.522553	0.44975	0.00020611	-0.69395	-0.00031801	-0.2442	-0.00011191	458.26817248583865	20.522	0.48193	20.469	20.327	20.809	-0.05291	-0.0080609	6.5164E-05	NaN	5.7604	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64243			762	7364	454	454							0.06187276765456318
ALKQRPDG	8	Unmodified	_ALKQRPDG_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL;NIPBL|p.D836Ifs*11|1|0.21|ENSG00000164190|chr5:36985683-36985683|G/-|frameshift_variant;NIPBL|p.E879Kfs*50|1|0.32|ENSG00000164190|chr5:36985813-36985813|G/-|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.E879Kfs*50|1|0.32|ENSG00000164190|chr5:36985813-36985813|G/-|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7693786621094	2	442.751059	883.487565	-0.12909	-5.7156E-05	-0.33852	-0.00014988	-0.46761	-0.00020704	442.7510016622465	13.232	0.19581	13.232	13.058	13.254	0					10	6	2	0	0	0	0.34319	1	326	326		5.7604	1.0044	1	22032			763	5810;13032	455	455	848	848					0.04116033957518539
ALKQRPDG	8	Unmodified	_ALKQRPDG_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL;NIPBL|p.D836Ifs*11|1|0.21|ENSG00000164190|chr5:36985683-36985683|G/-|frameshift_variant;NIPBL|p.E879Kfs*50|1|0.32|ENSG00000164190|chr5:36985813-36985813|G/-|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL;NIPBL|p.E879Kfs*50|1|0.32|ENSG00000164190|chr5:36985813-36985813|G/-|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	442.751059	883.487565	-0.20598	-9.12E-05	-0.058573	-2.5933E-05	-0.26456	-0.00011713	442.75065064835024	13.276	0.18025	13.177	13.069	13.249	-0.099291	-0.027555	0.00017028	NaN	14.582	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30851			764	5810;13032	455	455							0.04116033957518539
ALKRKKHIH	9	Unmodified	_ALKRKKHIH_					0	0	0			REV__ENSG00000104613|ENST00000397977|INTS10	REV__ENSG00000104613|ENST00000397977|INTS10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.8002319335938	2	565.867092	1129.71963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.045	1	12.045	11.545	12.545	0								0	0	0	0.2672	1	9	9		0.52476	0	1		+		765	14412	456	456	849	849					0.15995921098942745
ALLARQLTI	9	Unmodified	_ALLARQLTI_					0	0	0		nc|ENSG00000145014|Q2T9K0-4|TMEM44;ENSG00000145014|ENST00000347147|TMEM44;nc|ENSG00000145014|Q2T9K0-7|TMEM44;nc|ENSG00000145014|Q2T9K0-6|TMEM44;nc|ENSG00000145014|Q2T9K0|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7930603027344	2	499.821484	997.628415	0.51302	0.00025642	-0.29301	-0.00014645	0.22001	0.00010997	499.821425304597	64.175	0.48457	64.268	63.986	64.471	0.09288					27	17	2	0	0	0	0.21389	1	15877	15877		19.257	0	1	320820			766	4628	457	457	850	850					0.1295061261095043
ALLDGSNVVFK	11	Unmodified	_ALLDGSNVVFK_					0	0	0		ENST00000491382.1_1_6:33257633-33258228:+|nuORF;ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.8269653320312	2	581.826963	1161.63937	0.3966	0.00023075	0.18103	0.00010533	0.57763	0.00033608	581.8268182988895	56.925	0.83244	56.925	56.633	57.466	0					76	30	4	0	0	0	7.8723E-09	4	13698	13670;13698;13718;13761		146.48	88.76	1	1739700			767	11178	458	458	851;852;853;854	852					0.06501970194563
ALLDGSNVVFK	11	Unmodified	_ALLDGSNVVFK_					0	0	0		ENST00000491382.1_1_6:33257633-33258228:+|nuORF;ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3447265625	2	581.826963	1161.63937	0.3695	0.00021498	0.24374	0.00014181	0.61324	0.0003568	581.8268514897486	56.814	0.79425	56.892	56.603	57.397	0.078674					75	29	4	0	0	0	1.6446E-12	3	13662	13652;13662;13708		157.49	107.93	1	1917200			768	11178	458	458	855;856;857	856					0.06501970194563
ALLDGSNVVFK	11	Unmodified	_ALLDGSNVVFK_					0	0	0		ENST00000491382.1_1_6:33257633-33258228:+|nuORF;ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.826904296875	2	581.826963	1161.63937	0.52576	0.0003059	-0.19621	-0.00011416	0.32955	0.00019174	581.8266876324577	56.94	0.74116	56.921	56.7	57.441	-0.019077					64	26	4	0	0	0	1.6446E-12	3	13683	13683;13734;13761		157.49	107.93	1	1864400			769	11178	458	458	858;859;860	858					0.06501970194563
ALLDSQFSY	9	Unmodified	_ALLDSQFSY_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2462158203125	2	522.25584	1042.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.202	1	67.186	66.686	67.686	-0.016296								0	0	0	0.12621	1	16850	16850		40.239	7.9337	1				770	4780	459	459	861	861					-0.022422425476179342
ALLGGEHDEA	10	Unmodified	_ALLGGEHDEA_					0	0	0			REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3154602050781	2	506.240721	1010.46689	0.42789	0.00021662	-1.9335	-0.00097882	-1.5056	-0.0007622	506.2396512538968	89.152	0.51954	89.152	88.922	89.442	0					38	23	3	0	0	0	0.3156	1	23526	23526		10.824	6.4947	1	164170	+		771	16129	460	460	862	862					-0.03792601212808222
ALLGVIIAK	9	Unmodified	_ALLGVIIAK_					0	0	0		chr5:157035040-157037247|179|16.51|0.02|9.89|-|2|None,HAVCR1|1;chr5:157002907-157037247|444|16.22|0.27|5.92|-|2|None,HAVCR1|1;chr5:157029841-157037247|491|55.93|0.59|6.56|-|2|HAVCR1,HAVCR1|1;ENSG00000113249|ENST00000523175|HAVCR1	chr5:157035040-157037247|179|16.51|0.02|9.89|-|2|None,HAVCR1|1	chr5:157035040-157037247|179|16.51|0.02|9.89|-|2|None,HAVCR1|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.31024169921875	2	449.310221	896.605889	0.34355	0.00015436	-0.011653	-5.2358E-06	0.3319	0.00014913	449.3101082961661	57.063	0.55663	57.063	56.849	57.405	0					44	20	3	0	0	0	0.013258	1	13750	13750		74.423	16.951	1	518210			772	168	461	461	863	863					0.15345013213323
ALLGVIIAK	9	Unmodified	_ALLGVIIAK_					0	0	0		chr5:157035040-157037247|179|16.51|0.02|9.89|-|2|None,HAVCR1|1;chr5:157002907-157037247|444|16.22|0.27|5.92|-|2|None,HAVCR1|1;chr5:157029841-157037247|491|55.93|0.59|6.56|-|2|HAVCR1,HAVCR1|1;ENSG00000113249|ENST00000523175|HAVCR1	chr5:157035040-157037247|179|16.51|0.02|9.89|-|2|None,HAVCR1|1	chr5:157035040-157037247|179|16.51|0.02|9.89|-|2|None,HAVCR1|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.3102111816406	2	449.310221	896.605889	0.18765	8.4315E-05	-0.018128	-8.145E-06	0.16953	7.617E-05	449.31011407038477	56.999	0.55727	57.078	56.778	57.336	0.078674					36	20	2	0	0	0	0.017871	1	13715	13715		67.344	9.8725	1	500140			773	168	461	461	864	864					0.15345013213323
ALLGVIIAK	9	Unmodified	_ALLGVIIAK_					0	0	0		chr5:157035040-157037247|179|16.51|0.02|9.89|-|2|None,HAVCR1|1;chr5:157002907-157037247|444|16.22|0.27|5.92|-|2|None,HAVCR1|1;chr5:157029841-157037247|491|55.93|0.59|6.56|-|2|HAVCR1,HAVCR1|1;ENSG00000113249|ENST00000523175|HAVCR1	chr5:157035040-157037247|179|16.51|0.02|9.89|-|2|None,HAVCR1|1	chr5:157035040-157037247|179|16.51|0.02|9.89|-|2|None,HAVCR1|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.3101806640625	2	449.310221	896.605889	0.33137	0.00014889	-0.15104	-6.7864E-05	0.18033	8.1025E-05	449.3100548643282	57.02	0.5522	57.001	56.809	57.362	-0.019081					34	19	2	0	0	0	0.010938	1	13737	13737		77.984	17.595	1	457670			774	168	461	461	865	865					0.15345013213323
ALLISLKYG	9	Unmodified	_ALLISLKYG_					0	0	0		nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1;ENST00000487168.1_1_7:91830052-91830758:-|nuORF	nc|ENSG00000001631|O00522-2|KRIT1	nc|ENSG00000001631|O00522-2|KRIT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.8209533691406	2	489.305136	976.595718	0.29531	0.0001445	-0.40802	-0.00019965	-0.11271	-5.5151E-05	489.304765450743	49.866	0.40711	49.866	49.701	50.108	0					20	14	2	0	0	0	0.19747	1	11514	11514		24.021	2.2739	1	107590			775	291	462	462	866	866					0.1064840548808661
ALLKMWSF	8	Unmodified	_ALLKMWSF_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.8296203613281	2	498.272781	994.531009	0.63263	0.00031522	2.4676	0.0012295	3.1002	0.0015448	498.273785942917	45.468	0.50928	45.527	45.31	45.819	0.059834					28	17	3	0	0	0	0.33995	1	10178	10178		5.7604	0	1	171620	+		776	18852	463	463	867	867					0.03352507410443195
ALLKWYYLGRR	11	Unmodified	_ALLKWYYLGRR_					0	0	0		ENST00000462275.5_1_7:139529186-139716213:+|nuORF	ENST00000462275.5_1_7:139529186-139716213:+|nuORF	ENST00000462275.5_1_7:139529186-139716213:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7485656738281	3	480.282106	1437.82449	-0.18054	-8.6709E-05	-3.231	-0.0015518	-3.4116	-0.0016385	480.2796416748761	39.207	0.77933	39.207	38.816	39.595	0					77	27	4	0	0	0	0.33064	1	8308	8308		7.9454	6.7306	1	707330			777	10757	464	464	868	868					0.12308997784793974
ALLKWYYLGRR	11	Unmodified	_ALLKWYYLGRR_					0	0	0		ENST00000462275.5_1_7:139529186-139716213:+|nuORF	ENST00000462275.5_1_7:139529186-139716213:+|nuORF	ENST00000462275.5_1_7:139529186-139716213:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7486267089844	3	480.282106	1437.82449	0.39102	0.0001878	-3.5704	-0.0017148	-3.1794	-0.001527	480.279420533877	39.081	0.72831	39.181	38.81	39.539	0.099407					74	25	4	0	0	0	0.33064	1	8215	8215		2.8433	0	1	745280			778	10757	464	464	869	869					0.12308997784793974
ALLLPQPKP	9	Unmodified	_ALLLPQPKP_					0	0	0			REV__ENST00000418045.5_3_2:201390872-201390965:+|nuORF	REV__ENST00000418045.5_3_2:201390872-201390965:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.8133239746094	2	488.813128	975.611703	0.50034	0.00024457	0.020112	9.831E-06	0.52046	0.00025441	488.8130400113518	48.371	2.9119	48.371	46.789	49.701	0					226	104	4	0	0	0	0.015402	4	11161	10807;10855;10909;11161		71.134	3.0529	1	4490000	+		779	20832	465	465	870;871;872;873	873					0.12292111724991628
ALLLPQPKP	9	Unmodified	_ALLLPQPKP_					0	0	0			REV__ENST00000418045.5_3_2:201390872-201390965:+|nuORF	REV__ENST00000418045.5_3_2:201390872-201390965:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.8132019042969	2	488.813128	975.611703	0.6399	0.00031279	-0.17437	-8.5235E-05	0.46553	0.00022756	488.8129699611609	48.356	2.2126	48.403	46.95	49.163	0.04752					194	81	4	0	0	0	0.019896	3	10880	10822;10880;10926		64.236	1.9833	1	4507400	+		780	20832	465	465	874;875;876	875					0.12292111724991628
ALLLPQPKP	9	Unmodified	_ALLLPQPKP_					0	0	0			REV__ENST00000418045.5_3_2:201390872-201390965:+|nuORF	REV__ENST00000418045.5_3_2:201390872-201390965:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.8133544921875	2	488.813128	975.611703	0.5184	0.0002534	-0.018236	-8.9139E-06	0.50016	0.00024449	488.81305233423404	48.36	2.2938	48.403	46.866	49.16	0.04332					216	84	4	0	0	0	0.068501	3	10944	10827;10894;10944		46.021	2.1627	1	4324200	+		781	20832	465	465	877;878;879	879					0.12292111724991628
ALLLTKAPQ	9	Unmodified	_ALLLTKAPQ_					0	0	0		ANKRD6|p.L498Wfs*5|1|0.34|ENSG00000135299|chr6:89629116-89629116|C/-|frameshift_variant;ENST00000518253.5_1_6:90312741-90340720:+|nuORF;nc|ENSG00000135299|Q9Y2G4-1|ANKRD6;ANKRD6|p.N695Kfs*6|1|0.27|ENSG00000135299|chr6:89630904-89630908|ATCAG/-|frameshift_variant;nc|ENSG00000135299|Q9Y2G4-3|ANKRD6;ENSG00000135299|ENST00000339746|ANKRD6	ANKRD6|p.L498Wfs*5|1|0.34|ENSG00000135299|chr6:89629116-89629116|C/-|frameshift_variant	ANKRD6|p.L498Wfs*5|1|0.34|ENSG00000135299|chr6:89629116-89629116|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.2955322265625	2	477.80276	953.590967	0.40704	0.00019449	0.67616	0.00032307	1.0832	0.00051756	477.8028801867581	42.024	0.88144	42.116	41.836	42.717	0.091362					81	30	4	0	0	0	0.22596	1	9038	9038		21.747	1.293	1	1836700			782	46	466	466	880	880					0.11231521345325746
ALLMDPEL	8	Unmodified	_ALLMDPEL_					0	0	0		nc|ENSG00000174898|Q86XM0-2|CATSPERD;ENSG00000174898|ENST00000381624|CATSPERD	nc|ENSG00000174898|Q86XM0-2|CATSPERD;ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.6003723144531	2	451.238604	900.462655	0.1792	8.0863E-05	-0.15699	-7.0841E-05	0.022208	1.0021E-05	451.23854700211473	57.122	0.49339	57.103	56.92	57.414	-0.019081					26	17	2	0	0	0	0.29855	1	13746	13746		24.674	0	1	258720			783	6826;12848	467	467	881	881					0.008442180399129029
ALLPRLSSL	9	Unmodified	_ALLPRLSSL_					0	0	0			REV__ENST00000591166.1_1_17:42259005-42263988:-|nuORF	REV__ENST00000591166.1_1_17:42259005-42263988:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002624511719	2	485.30821	968.601866	0.18714	9.0819E-05	0.1512	7.3377E-05	0.33833	0.0001642	485.3082263202615	59.216	0.79725	59.216	58.682	59.479	0					48	27	2	0	0	0	0.13748	1	14440	14440		32.786	2.1491	1	195220	+		784	22511	468	468	882	882					0.11630923719621933
ALLPRLSSL	9	Unmodified	_ALLPRLSSL_					0	0	0			REV__ENST00000591166.1_1_17:42259005-42263988:-|nuORF	REV__ENST00000591166.1_1_17:42259005-42263988:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8005065917969	2	485.30821	968.601866	0.25401	0.00012327	-0.13336	-6.4722E-05	0.12064	5.8549E-05	485.30805256704326	59.079	0.75752	59.17	58.677	59.434	0.091301					45	26	2	0	0	0	0.11461	1	14395	14395		36.127	3.3413	1	221250	+		785	22511	468	468	883	883					0.11630923719621933
ALLPRLSSL	9	Unmodified	_ALLPRLSSL_					0	0	0			REV__ENST00000591166.1_1_17:42259005-42263988:-|nuORF	REV__ENST00000591166.1_1_17:42259005-42263988:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003845214844	2	485.30821	968.601866	0.39715	0.00019274	-0.086343	-4.1903E-05	0.3108	0.00015084	485.3080810004492	59.251	0.83088	59.237	58.684	59.515	-0.014267					49	28	2	0	0	0	0.18208	1	14442	14442		26.268	3.5319	1	218820	+		786	22511	468	468	884	884					0.11630923719621933
ALLPRLSSL	9	Unmodified	_ALLPRLSSL_					0	0	0			REV__ENST00000591166.1_1_17:42259005-42263988:-|nuORF	REV__ENST00000591166.1_1_17:42259005-42263988:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	485.30821	968.601866	0.39715	0.00019274	-0.086343	-4.1903E-05	0.3108	0.00015084	485.3080810004492	59.251	0.83088	59.237	58.684	59.515	-0.014267	0.029112	-9.3499E-05	NaN	36.127	49	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218820	+		787	22511	468	468							0.11630923719621933
ALLPVTNI	8	Unmodified	_ALLPVTNI_					0	0	0		ENST00000537318.5_1_11:61546644-61549415:+|nuORF;nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF	ENST00000537318.5_1_11:61546644-61549415:+|nuORF	ENST00000537318.5_1_11:61546644-61549415:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.75128173828125	2	420.763104	839.511654	-0.062701	-2.6382E-05	-0.13573	-5.7112E-05	-0.19843	-8.3494E-05	420.7630388795964	67.408	0.90527	67.408	66.937	67.842	0					69	31	3	0	0	0	0.41758	1	16851	16851		16.942	4.4107	1	651990			788	3188	469	469	885	885					0.08547874391160803
ALLQEEKF	8	Unmodified	_ALLQEEKF_					0	0	0			REV__ENST00000544487.5_1_16:30768821-30771097:-|nuORF	REV__ENST00000544487.5_1_16:30768821-30771097:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.8133239746094	2	489.26875	976.522947	0.58903	0.00028819	-0.83727	-0.00040965	-0.24824	-0.00012146	489.26830516332564	47.348	0.49549	47.348	47.112	47.608	0					27	17	2	0	0	0	0.33245	1	10807	10807		13.508	0	1	181290	+		789	18620	470	470	886	886					0.03374651694662134
ALLQPRRRSR	10	Unmodified	_ALLQPRRRSR_					0	0	0			REV__ENST00000278426.7_2_11:57281475-57283007:-|nuORF	REV__ENST00000278426.7_2_11:57281475-57283007:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.8887939453125	2	626.889087	1251.76362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.99	1	102.99	102.49	103.49	0								0	0	0	0.37739	1	27373	27373		3.2813	0.54611	1		+		790	19698	471	471	887	887					0.1478090552525373
ALLRLAPLL	9	Unmodified	_ALLRLAPLL_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000462785.1_1_2:112526870-112536431:-|nuORF;ENST00000454465.1_1_2:87398353-87423749:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.7970275878906	2	490.33677	978.658987	0.48849	0.00023952	-0.59061	-0.0002896	-0.10212	-5.0076E-05	490.33656936677875	83.322	0.29221	83.395	83.298	83.59	0.073097					12	10	2	0	0	0	0.25417	1	21793	21793		8.5933	0	1	67294			791	5060	472	472	888	888					0.16880390995981998
ALLRPLTIL	9	Unmodified	_ALLRPLTIL_					0	0	0			REV__ENSG00000112195|ENST00000483722|TREML2	REV__ENSG00000112195|ENST00000483722|TREML2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.84454345703125	2	505.342052	1008.66955	0.42593	0.00021524	2.5426	0.0012849	2.9685	0.0015001	505.34372007579987	74.326	1.1102	74.295	74	75.11	-0.030655					96	39	4	0	0	0	0.1659	1	19069	19069		36.044	19.102	1	3356000	+		792	14763	473	473	889	889					0.16556373650416845
ALLRVTVL	8	Unmodified	_ALLRVTVL_					0	0	0		nc|ENSG00000156453|Q08174|PCDH1;ENSG00000156453|ENST00000287008|PCDH1	nc|ENSG00000156453|Q08174|PCDH1	nc|ENSG00000156453|Q08174|PCDH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.7998962402344	2	442.80002	883.585488	0.29177	0.0001292	-0.080318	-3.5565E-05	0.21146	9.3633E-05	442.79989440273783	52.603	0.79827	52.654	52.417	53.215	0.050571					59	28	3	0	0	0	0.22	1	12442	12442		39.957	1.9833	1	2704100			793	12771	474	474	890	890					0.13903842553509094
ALLSIELCKF	10	Unmodified	_ALLSIELCKF_					0	0	0		ENST00000225655.5_1_17:4851977-4852085:-|nuORF	ENST00000225655.5_1_17:4851977-4852085:-|nuORF	ENST00000225655.5_1_17:4851977-4852085:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.82275390625	2	568.822835	1135.63112	0.17281	9.8296E-05	-1.339	-0.00076164	-1.1662	-0.00066334	568.8225093870444	59.195	1.6465	59.195	58.767	60.413	0					177	58	6	0	0	0	0.019821	2	14415	14377;14415		71.922	8.2849	1	21684000			794	8844	475	475	891;892	892					0.06872699953555639
ALMALVFIK	9	Oxidation (M)	_ALM(Oxidation (M))ALVFIK_		ALM(1)ALVFIK		ALM(57)ALVFIK	0	0	1		nc|ENSG00000288674|P49810-3|PSEN2;ENSG00000143801|ENST00000366783|PSEN2;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000288674|P49810-3|PSEN2	nc|ENSG00000288674|P49810-3|PSEN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.3003234863281	2	511.309364	1020.60417	-0.15896	-8.1277E-05	1.2292	0.0006285	1.0702	0.00054722	511.3099336402475	61.85	0.47988	61.947	61.67	62.149	0.096985					19	16	2	0	0	0	0.037693	1	15237	15237		57.471	40.529	1	135470			795	4548	476	476	893	893		576			0.09469636133076165
ALMALVFIK	9	Oxidation (M)	_ALM(Oxidation (M))ALVFIK_					0	0	1		nc|ENSG00000288674|P49810-3|PSEN2;ENSG00000143801|ENST00000366783|PSEN2;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000288674|P49810-3|PSEN2	nc|ENSG00000288674|P49810-3|PSEN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	511.309364	1020.60417	0.244	0.00012476	0.96182	0.00049179	1.2058	0.00061655	511.3098093873841	61.927	0.30015	61.927	61.784	62.084	0	-0.0099967	-8.5549E-05	NaN	57.471	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117750			796	4548	476	476				576			0.09469636133076165
ALMCHAIPVF	10	Unmodified	_ALMCHAIPVF_					0	0	0			REV__ENST00000341255.3_1_22:44892405-44892621:-|nuORF	REV__ENST00000341255.3_1_22:44892405-44892621:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8348999023438	2	551.282823	1100.55109	0.74108	0.00040854	-0.028013	-1.5443E-05	0.71307	0.0003931	551.7847341050347	54.725	0.4592	54.725	54.405	54.864	0					32	16	3	0	0	0	0.28208	1	12985	12985		18.135	1.0221	1	500600	+		797	20116	477	477	894	894					0.004839350787506191
ALMKLQKP	8	Unmodified	_ALMKLQKP_					0	0	0		ENSG00000184012|ENST00000332149|TMPRSS2;nc|ENSG00000184012|O15393-2|TMPRSS2	ENSG00000184012|ENST00000332149|TMPRSS2	ENSG00000184012|ENST00000332149|TMPRSS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.78607177734375	2	464.786056	927.557558	-0.96186	-0.00044706	0.53905	0.00025054	-0.4228	-0.00019651	464.7861917388558	34.376	0.6293	34.442	34.176	34.805	0.06636					51	22	3	0	0	0	0.45169	1	6762	6762		5.2307	0	1	424100			798	7424	478	478	895	895					0.09088196301786411
ALMLTPLFK	9	Oxidation (M)	_ALM(Oxidation (M))LTPLFK_		ALM(1)LTPLFK		ALM(69)LTPLFK	0	0	1		nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ENSG00000154265|ENST00000392676|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2792358398438	2	525.306821	1048.59909	0.53997	0.00028365	-0.49472	-0.00025988	0.045246	2.3768E-05	525.3061618419486	62.816	0.34697	62.816	62.637	62.984	0					23	12	2	0	0	0	0.059216	1	15532	15532		69.105	31.131	1	235460			799	5118	479	479	896	896		628			0.07673332270428546
ALMLTPLFK	9	Oxidation (M)	_ALM(Oxidation (M))LTPLFK_		ALM(1)LTPLFK		ALM(65)LTPLFK	0	0	1		nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ENSG00000154265|ENST00000392676|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	nc|ENSG00000154265|Q8WWZ7-2|ABCA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.279541015625	2	525.306821	1048.59909	0.48236	0.00025339	-3.037	-0.0015954	-2.5547	-0.001342	525.306085945164	62.797	0.58075	62.788	62.413	62.994	-0.0085526					33	21	2	0	0	0	0.066761	1	15497	15497		65.235	27.261	1	310840			800	5118	479	479	897	897		628			0.07673332270428546
ALMRHMIF	8	Unmodified	_ALMRHMIF_					0	0	0			REV__ENST00000575147.5_1_17:6663161-6665275:+|nuORF	REV__ENST00000575147.5_1_17:6663161-6665275:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2852783203125	2	509.769883	1017.52521	0.71902	0.00036653	-0.1718	-8.7577E-05	0.54722	0.00027896	509.7696690960831	37.224	0.41317	37.224	37.039	37.452	0					17	14	2	0	0	0	0.34046	1	7683	7683		14.582	2.9414	1	140130	+		801	15577	480	480	898	898					0.017150856271314296
ALMRTLEEGHD	11	Unmodified	_ALMRTLEEGHD_					0	0	0		ENSG00000095906|ENST00000262302|NUBP2	ENSG00000095906|ENST00000262302|NUBP2	ENSG00000095906|ENST00000262302|NUBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.5749816894531	3	424.539805	1270.59759	-0.16577	-7.0375E-05	1.3071	0.00055493	1.1414	0.00048456	424.87470558244576	25.447	0.32696	25.447	25.296	25.623	0					14	10	2	0	0	0	0.33119	1	4053	4053		2.6312	0.72486	1	64891			802	1458	481	481	899	899					-0.02688953556253182
ALNAITTAIL	10	Unmodified	_ALNAITTAIL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.79541015625	2	500.8055	999.596446	0.45649	0.00022861	-0.37335	-0.00018698	0.083142	4.1638E-05	500.80550495515746	58.366	0.72474	58.366	58.075	58.8	0					49	24	3	0	0	0	0.37587	1	14260	14260		7.9102	0	1	485210			803	5186	482	482	900	900					0.09663200137117656
ALNAVRLLV	9	Unmodified	_ALNAVRLLV_					0	0	0		ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.8160400390625	2	484.816202	967.617851	0.052748	2.5573E-05	-0.12436	-6.0291E-05	-0.07161	-3.4718E-05	484.81600576573686	60.335	0.42286	60.335	60.098	60.521	0					27	15	2	0	0	0	0.006189	1	14748	14748		85.272	30.498	1	740630			804	2230	483	483	901	901					0.1327462995652695
ALNAVRLLV	9	Unmodified	_ALNAVRLLV_					0	0	0		ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.8160705566406	2	484.816202	967.617851	-0.23232	-0.00011263	0.18418	8.9292E-05	-0.048138	-2.3338E-05	484.8160930541971	60.193	0.55919	60.288	60.047	60.606	0.095093					38	20	3	0	0	0	0.006189	1	14704	14704		85.272	30.498	1	827850			805	2230	483	483	902	902					0.1327462995652695
ALNAVRLLV	9	Unmodified	_ALNAVRLLV_					0	0	0		ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.81597900390625	2	484.816202	967.617851	0.17633	8.5487E-05	-0.046719	-2.265E-05	0.12961	6.2837E-05	484.81596909312174	60.312	0.45722	60.301	60.057	60.514	-0.011486					28	16	2	0	0	0	0.006189	1	14737	14737		85.272	30.498	1	757760			806	2230	483	483	903	903					0.1327462995652695
ALNSVTVRNY	10	Unmodified	_ALNSVTVRNY_					0	0	0		ENST00000458296.1_1_6:32812581-32813517:+|nuORF	ENST00000458296.1_1_6:32812581-32813517:+|nuORF	ENST00000458296.1_1_6:32812581-32813517:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8070068359375	2	568.806562	1135.59857	0.040516	2.3046E-05	0.45885	0.000261	0.49937	0.00028404	568.8067878871165	13.064	0.25479	12.965	12.814	13.069	-0.099291					14	8	2	0	0	0	0.32139	1	330	330		1.3295	0.63916	1	47832			807	10709	484	484	904	904					0.03619628874935188
ALNSVTVRNY	10	Unmodified	_ALNSVTVRNY_					0	0	0		ENST00000458296.1_1_6:32812581-32813517:+|nuORF	ENST00000458296.1_1_6:32812581-32813517:+|nuORF	ENST00000458296.1_1_6:32812581-32813517:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	568.806562	1135.59857	-0.092841	-5.2808E-05	0.92887	0.00052835	0.83603	0.00047554	568.8067170127857	12.997	0.24317	12.997	12.847	13.09	0	0.020809	0.00044149	NaN	1.3295	22	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41015			808	10709	484	484							0.03619628874935188
ALNSVTVRNY	10	Unmodified	_ALNSVTVRNY_					0	0	0		ENST00000458296.1_1_6:32812581-32813517:+|nuORF	ENST00000458296.1_1_6:32812581-32813517:+|nuORF	ENST00000458296.1_1_6:32812581-32813517:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	568.806562	1135.59857	-0.15905	-9.0469E-05	0.16686	9.4912E-05	0.0078114	4.4432E-06	568.8063590092613	13.034	0.25567	12.967	12.791	13.047	-0.067496	-0.0092635	-0.00042538	NaN	1.3295	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39783			809	10709	484	484							0.03619628874935188
ALNTKTSY	8	Unmodified	_ALNTKTSY_					0	0	0		ENST00000519256.5_1_5:170585477-170669877:+|nuORF;ENST00000389118.8_1_5:170395310-170711609:+|nuORF;ENST00000522533.5_1_5:170395310-170725859:+|nuORF;ENST00000519949.5_1_5:170395310-170725859:+|nuORF;ENSG00000204764|ENST00000523189|RANBP17;ENST00000520864.5_1_5:170395310-170632776:+|nuORF	ENST00000519256.5_1_5:170585477-170669877:+|nuORF	ENST00000519256.5_1_5:170585477-170669877:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7532653808594	2	449.23745	896.460347	0.46667	0.00020965	-1.7821	-0.00080057	-1.3154	-0.00059093	449.23666320828613	50.836	0.48863	50.883	50.63	51.118	0.046574					26	17	2	0	0	0	0.34319	1	11872	11872		2.5775	2.5775	1	140160			810	8255	485	485	905	905					0.0079750562646268
ALNWRQIRHK	10	Unmodified	_ALNWRQIRHK_					0	0	0			REV__ENST00000469702.5_1_2:114462911-114480749:-|nuORF	REV__ENST00000469702.5_1_2:114462911-114480749:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7508239746094	3	441.258184	1320.75272	-0.0038979	-1.72E-06	-0.74005	-0.00032655	-0.74395	-0.00032827	441.25779624685424	31.583	0.32119	31.583	31.423	31.745	0					17	11	2	0	0	0	0.31094	1	5901	5901		14.957	7.4801	1	229360	+		811	21344	486	486	906	906					0.10517503150958873
ALNWRQIRHK	10	Unmodified	_ALNWRQIRHK_					0	0	0			REV__ENST00000469702.5_1_2:114462911-114480749:-|nuORF	REV__ENST00000469702.5_1_2:114462911-114480749:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	441.258184	1320.75272	-0.022123	-9.7618E-06	-1.3218	-0.00058324	-1.3439	-0.000593	441.5918461090142	31.562	0.27869	31.604	31.458	31.737	0.042366	0.010609	-0.00011562	NaN	14.957	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	396810	+		812	21344	486	486							0.10517503150958873
ALPAELQTTP	10	Unmodified	_ALPAELQTTP_					0	0	0		ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.784423828125	2	520.784764	1039.55498	0.40008	0.00020836	-0.29478	-0.00015352	0.1053	5.4838E-05	520.7842441346467	96.781	2.0616	96.775	96.072	98.134	-0.0055466					546	213	4	0	0	0	0.38773	1	25873	25873		5.7319	0	1	1691900			813	8414	487	487	907	907					0.036780193777985914
ALPFLYVP	8	Unmodified	_ALPFLYVP_					0	0	0		ENSG00000268738|ENST00000598963|HSFX2;ENSG00000171116|ENST00000370416|HSFX1	ENSG00000268738|ENST00000598963|HSFX2	ENSG00000268738|ENST00000598963|HSFX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.7760925292969	2	460.268022	918.521491	-0.14178	-6.5257E-05	0.09887	4.5507E-05	-0.042911	-1.9751E-05	460.268001278619	15.019	0.16484	14.91	14.818	14.982	-0.10981					8	5	2	0	0	0	0.3439	1	909	909		2.8892	0	1	22920			814	6515	488	488	908	908					0.058970623965592495
ALPKELPLI	9	Unmodified	_ALPKELPLI_					0	0	0		ENSG00000105556|ENST00000264819|MIER2	ENSG00000105556|ENST00000264819|MIER2	ENSG00000105556|ENST00000264819|MIER2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.3211975097656	2	497.320786	992.627018	0.45594	0.00022675	0.55788	0.00027744	1.0138	0.00050419	497.32089244182856	63.417	0.70427	63.417	63.093	63.797	0					64	25	4	0	0	0	0.13748	1	15698	15698		32.786	0.4802	1	698670			815	1993	489	489	909	909					0.13040978522201385
ALPKGTIVL	9	Unmodified	_ALPKGTIVL_					0	0	0		nc|ENSG00000106853|Q14914-2|PTGR1;ENSG00000106853|ENST00000407693|PTGR1	nc|ENSG00000106853|Q14914-2|PTGR1	nc|ENSG00000106853|Q14914-2|PTGR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2998352050781	2	456.299853	910.585153	0.14574	6.6503E-05	0.10036	4.5793E-05	0.2461	0.0001123	456.2997993378786	49.753	0.99886	49.753	49.434	50.433	0					91	36	4	0	0	0	0.016723	2	11505	11455;11505		69.105	25.247	1	2324800			816	2105	490	490	910;911	911					0.1262842283365444
ALPKGTIVL	9	Unmodified	_ALPKGTIVL_					0	0	0		nc|ENSG00000106853|Q14914-2|PTGR1;ENSG00000106853|ENST00000407693|PTGR1	nc|ENSG00000106853|Q14914-2|PTGR1	nc|ENSG00000106853|Q14914-2|PTGR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2999267578125	2	456.299853	910.585153	0.18796	8.5766E-05	0.090853	4.1456E-05	0.27881	0.00012722	456.2997741404003	49.72	0.9174	49.764	49.515	50.433	0.044891					79	34	3	0	0	0	0.03069	2	11493	11450;11493		60.074	16.216	1	2353800			817	2105	490	490	912;913	913					0.1262842283365444
ALPKGTIVL	9	Unmodified	_ALPKGTIVL_					0	0	0		nc|ENSG00000106853|Q14914-2|PTGR1;ENSG00000106853|ENST00000407693|PTGR1	nc|ENSG00000106853|Q14914-2|PTGR1	nc|ENSG00000106853|Q14914-2|PTGR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2999572753906	2	456.299853	910.585153	0.16452	7.5068E-05	0.062116	2.8343E-05	0.22663	0.00010341	456.2997746925094	49.745	0.85188	49.766	49.457	50.309	0.020691					75	31	3	0	0	0	0.063853	2	11487	11440;11487		47.749	7.3001	1	2118900			818	2105	490	490	914;915	915					0.1262842283365444
ALPLDTVTFYK	11	Unmodified	_ALPLDTVTFYK_					0	0	0		ENST00000552052.1_2_12:112451308-112457507:+|nuORF;nc|ENSG00000089248|P30040-2|ERP29;ENST00000553161.1_1_12:112451251-112452397:+|nuORF;ENST00000442902.1_1_20:50727220-50727574:-|nuORF;ENSG00000089248|ENST00000261735|ERP29	ENST00000552052.1_2_12:112451308-112457507:+|nuORF	ENST00000552052.1_2_12:112451308-112457507:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3504028320312	2	634.350271	1266.68599	0.5864	0.00037198	-0.20664	-0.00013108	0.37976	0.0002409	634.3500694850215	64.212	0.96879	64.212	63.915	64.884	0					105	35	4	0	0	0	1.9818E-05	4	15955	15910;15955;16005;16058		115.06	71.287	1	4024800			819	1355	491	491	916;917;918;919	917					0.06331410025836703
ALPLDTVTFYK	11	Unmodified	_ALPLDTVTFYK_					0	0	0		ENST00000552052.1_2_12:112451308-112457507:+|nuORF;nc|ENSG00000089248|P30040-2|ERP29;ENST00000553161.1_1_12:112451251-112452397:+|nuORF;ENST00000442902.1_1_20:50727220-50727574:-|nuORF;ENSG00000089248|ENST00000261735|ERP29	ENST00000552052.1_2_12:112451308-112457507:+|nuORF	ENST00000552052.1_2_12:112451308-112457507:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3504028320312	2	634.350271	1266.68599	0.59646	0.00037837	-0.27028	-0.00017145	0.32618	0.00020691	634.3500200433251	64.089	0.98003	64.182	63.9	64.88	0.09288					108	35	4	0	0	0	1.9818E-05	3	15917	15869;15917;15968		115.06	78.553	1	3910200			820	1355	491	491	920;921;922	921					0.06331410025836703
ALPLDTVTFYK	11	Unmodified	_ALPLDTVTFYK_					0	0	0		ENST00000552052.1_2_12:112451308-112457507:+|nuORF;nc|ENSG00000089248|P30040-2|ERP29;ENST00000553161.1_1_12:112451251-112452397:+|nuORF;ENST00000442902.1_1_20:50727220-50727574:-|nuORF;ENSG00000089248|ENST00000261735|ERP29	ENST00000552052.1_2_12:112451308-112457507:+|nuORF	ENST00000552052.1_2_12:112451308-112457507:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	634.350271	1266.68599	0.74093	0.00047001	-0.39947	-0.0002534	0.34147	0.00021661	634.3499541393293	64.217	0.98791	64.208	63.936	64.924	-0.0095367	0.0072158	-0.00013798	NaN	115.06	110	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3836700			821	1355	491	491							0.06331410025836703
ALPLFFELL	9	Unmodified	_ALPLFFELL_					0	0	0			REV__ENSG00000162881|ENST00000378661|OXER1	REV__ENSG00000162881|ENST00000378661|OXER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.817138671875	2	531.815336	1061.61612	0.49315	0.00026227	1.7573	0.00093458	2.2505	0.0011968	531.816739436679	81.506	2.0425	81.482	81.161	83.204	-0.02404					202	83	5	0	0	0	0.32733	1	21340	21340		4.756	1.1595	1	2014200	+		822	17017	492	492	923	923					0.08777576147895161
ALPLKNQLD	9	Unmodified	_ALPLKNQLD_					0	0	0			REV__ENST00000592222.5_1_19:1115804-1132196:-|nuORF	REV__ENST00000592222.5_1_19:1115804-1132196:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7468566894531	2	506.295299	1010.57605	0.44511	0.00022536	2.8238	0.0014297	3.2689	0.001655	506.79870983161805	58.571	0.1561	58.571	58.468	58.624	0					6	4	2	0	0	0	0.24311	1	14176	14176		16.942	8.349	1	59709	+		823	13651	493	493	924	924					0.07118029477317123
ALPLLAQLQEV	11	Unmodified	_ALPLLAQLQEV_					0	0	0			REV__ENST00000459925.1_1_16:67702005-67702500:+|nuORF	REV__ENST00000459925.1_1_16:67702005-67702500:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8563232421875	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.013	1	89.104	88.604	89.604	0.090569								0	0	0	0.36137	1	23530	23530		5.7319	1.7875	1		+		824	16867	494	494	925	925					0.11287116262769814
ALPLLAQLQEV	11	Unmodified	_ALPLLAQLQEV_					0	0	0			REV__ENST00000459925.1_1_16:67702005-67702500:+|nuORF	REV__ENST00000459925.1_1_16:67702005-67702500:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8560791015625	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.07	1	102.07	101.57	102.57	-0.0033646								0	0	0	0.37382	1	27221	27221		2.9952	0.69251	1		+		825	16867	494	494	926	926					0.11287116262769814
ALPLSVAPLI	10	Unmodified	_ALPLSVAPLI_					0	0	0		ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.3210754394531	2	497.320786	992.627018	0.48759	0.00024249	0.59282	0.00029482	1.0804	0.00053731	497.32088737483275	63.291	0.75874	63.387	63.066	63.825	0.095726					63	26	5	0	0	0	0.30958	1	15658	15658		19.257	2.1441	1	613140			826	8252	495	495	927	927					0.13040978522178648
ALPLSVAPLI	10	Unmodified	_ALPLSVAPLI_					0	0	0		ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.3212585449219	2	497.320786	992.627018	0.45918	0.00022836	0.29449	0.00014646	0.75368	0.00037482	497.3208642812049	63.416	0.71905	63.408	63.076	63.795	-0.0085564					60	25	3	0	0	0	0.20278	2	15670	15670;15714		32.305	4.9457	1	594140			827	8252	495	495	928;929	928					0.13040978522178648
ALPMYNRRRAL	11	Unmodified	_ALPMYNRRRAL_					0	0	0			REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2589416503906	3	454.259196	1359.75576	0.16063	7.2967E-05	-1.2396	-0.0005631	-1.079	-0.00049013	454.25873454684347	41.026	0.63488	41.116	40.876	41.511	0.090248					64	23	4	0	0	0	0.37728	1	8820	8820		14.218	1.3622	1	1016500	+		828	15594	496	496	930	930					0.09027010213503672
ALPPPHQKT	9	Unmodified	_ALPPPHQKT_					0	0	0			REV__ENSG00000176887|ENST00000322002|SOX11	REV__ENSG00000176887|ENST00000322002|SOX11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2672119140625	2	494.782359	987.550165	0.5518	0.00027302	0.68926	0.00034103	1.2411	0.00061406	494.7828447990749	48.826	1.0868	48.871	48.338	49.425	0.044888					64	39	2	0	0	0	0.21389	1	11248	11248		13.906	3.0821	1	807030	+		829	17955	497	497	931	931					0.05589180025708629
ALPPPHSLILH	11	Unmodified	_ALPPPHSLILH_					0	0	0			REV__ENST00000538616.1_1_12:6559812-6560605:-|nuORF	REV__ENST00000538616.1_1_12:6559812-6560605:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8563232421875	2	597.853316	1193.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.923	1	96.918	96.418	97.418	-0.0055466								0	0	0	0.37252	1	25932	25932		3.2813	0	1		+		830	22103	498	498	932	932					0.10297973048045606
ALPRLEPSL	9	Unmodified	_ALPRLEPSL_					0	0	0		ENST00000526289.5_1_11:64851764-64852181:+|nuORF	ENST00000526289.5_1_11:64851764-64852181:+|nuORF	ENST00000526289.5_1_11:64851764-64852181:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.767822265625	2	498.297842	994.581131	0.51813	0.00025818	-0.19432	-9.6831E-05	0.3238	0.00016135	498.2977915238874	58.034	0.47922	58.017	57.821	58.3	-0.0172					23	17	2	0	0	0	0.24913	1	14026	14026		4.3292	0	1	180200			831	11552	499	499	933	933					0.08362333339937322
ALPRWSTSL	9	Unmodified	_ALPRWSTSL_					0	0	0			REV__nc|ENSG00000175287|Q5SRE7-3|PHYHD1	REV__nc|ENSG00000175287|Q5SRE7-3|PHYHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7891235351562	2	515.787641	1029.56073	0.11344	5.8512E-05	0.51	0.00026305	0.62344	0.00032156	515.78786362281	42.215	1.1342	42.215	41.9	43.034	0					119	40	4	0	0	0	0.027237	3	9119	9112;9119;9166		61.357	0	1	6155500	+		832	23094	500	500	934;935;936	935					0.047131626801501625
ALPRWSTSL	9	Unmodified	_ALPRWSTSL_					0	0	0			REV__nc|ENSG00000175287|Q5SRE7-3|PHYHD1	REV__nc|ENSG00000175287|Q5SRE7-3|PHYHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7879028320312	2	515.787641	1029.56073	0.38141	0.00019672	0.16816	8.6736E-05	0.54957	0.00028346	515.787634558252	41.947	1.2062	42.037	41.829	43.035	0.090252					101	43	4	0	0	0	0.051692	2	9060	9060;9105		52.268	0	1	6712200	+		833	23094	500	500	937;938	937					0.047131626801501625
ALPRWSTSL	9	Unmodified	_ALPRWSTSL_					0	0	0			REV__nc|ENSG00000175287|Q5SRE7-3|PHYHD1	REV__nc|ENSG00000175287|Q5SRE7-3|PHYHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.7877807617188	2	515.787641	1029.56073	0.4297	0.00022164	0.16811	8.671E-05	0.59782	0.00030835	515.7876559567613	41.886	1.0769	41.983	41.729	42.805	0.096622					107	38	5	0	0	0	0.019245	3	9077	9029;9077;9121		65.235	0	1	6272100	+		834	23094	500	500	939;940;941	940					0.047131626801501625
ALPRWSTSL	9	Unmodified	_ALPRWSTSL_					0	0	0			REV__nc|ENSG00000175287|Q5SRE7-3|PHYHD1	REV__nc|ENSG00000175287|Q5SRE7-3|PHYHD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	515.787641	1029.56073	0.38141	0.00019672	0.16816	8.6736E-05	0.54957	0.00028346	515.787634558252	41.947	1.2062	42.037	41.829	43.035	0.090252	-0.041195	-0.00015654	NaN	65.235	101	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6712200	+		835	23094	500	500							0.047131626801501625
ALPRWSTSL	9	Unmodified	_ALPRWSTSL_					0	0	0			REV__nc|ENSG00000175287|Q5SRE7-3|PHYHD1	REV__nc|ENSG00000175287|Q5SRE7-3|PHYHD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	515.787641	1029.56073	0.4297	0.00022164	0.16811	8.671E-05	0.59782	0.00030835	515.7876559567613	41.886	1.0769	41.983	41.729	42.805	0.096622	-0.095552	-0.00015659	NaN	65.235	107	38	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6272100	+		836	23094	500	500							0.047131626801501625
ALPSKLPTF	9	Unmodified	_ALPSKLPTF_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.289306640625	2	487.289485	972.564418	0.58717	0.00028612	-0.48685	-0.00023724	0.10032	4.8886E-05	487.28914365407013	56.452	1.0115	56.452	55.787	56.799	0					95	36	4	0	0	0	0.082647	1	13612	13612		61.602	13.256	1	5162500			837	2985	501	501	942	942					0.0770383245398989
ALPSKLPTF	9	Unmodified	_ALPSKLPTF_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2893371582031	2	487.289485	972.564418	0.72167	0.00035166	-0.79562	-0.0003877	-0.073948	-3.6034E-05	487.28888123868063	56.338	0.63252	56.416	56.146	56.778	0.078674					78	23	4	0	0	0	0.067763	1	13542	13542		67.838	29.864	1	6276000			838	2985	501	501	943	943					0.0770383245398989
ALPSKLPTF	9	Unmodified	_ALPSKLPTF_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.2893981933594	2	487.289485	972.564418	0.98478	0.00047987	-0.82841	-0.00040367	0.15638	7.62E-05	487.28889867959253	56.557	0.70506	56.538	56.133	56.838	-0.019081					78	25	4	0	0	0	0.04299	1	13630	13630		55.503	15.545	1	5485900			839	2985	501	501	944	944					0.0770383245398989
ALPTHRRL	8	Unmodified	_ALPTHRRL_					0	0	0		ENST00000469070.1_1_3:119814200-119814557:+|nuORF	ENST00000469070.1_1_3:119814200-119814557:+|nuORF	ENST00000469070.1_1_3:119814200-119814557:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.75048828125	2	482.295968	962.577383	0.26445	0.00012754	1.2197	0.00058824	1.4841	0.00071578	482.2964469281306	51.78	0.79023	51.827	51.595	52.385	0.046574					70	28	3	0	0	0	0.34319	1	12252	12252		0.69038	0.69038	1	4014500			840	10846	502	502	945	945					0.09459708356746432
ALPTKTVKP	9	Unmodified	_ALPTKTVKP_					0	0	0		nc|ENSG00000273611|Q15649-2|ZNHIT3;ENSG00000273611|ENST00000617429|ZNHIT3	nc|ENSG00000273611|Q15649-2|ZNHIT3	nc|ENSG00000273611|Q15649-2|ZNHIT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.2969665527344	2	477.80276	953.590967	-0.042521	-2.0316E-05	0.6678	0.00031908	0.62528	0.00029876	477.8029608230748	42.18	1.108	42.18	41.9	43.008	0					74	39	3	0	0	0	0.24289	1	9085	9085		18.146	1.2041	1	1858100			841	8707	503	503	946	946					0.11231521345325746
ALPTPVAAVK	10	Unmodified	_ALPTPVAAVK_					0	0	0			REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541	REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.80279541015625	2	483.80276	965.590967	0.036995	1.7898E-05	-1.2608	-0.00060998	-1.2238	-0.00059208	483.80286366420125	64.988	1.2033	64.988	64.591	65.795	0					136	43	4	0	0	0	0.3258	1	16267	16267		17.113	2.2746	1	2305400	+		842	14999	504	504	947	947					0.10679521345321064
ALQEIYNQK	9	Unmodified	_ALQEIYNQK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3;ENST00000484865.1_1_21:45391291-45401085:+|nuORF	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.7958984375	2	553.795663	1105.57677	0.59134	0.00032748	-0.12331	-6.8289E-05	0.46803	0.00025919	553.7956260868606	32.557	0.50281	32.557	32.279	32.782	0					47	17	4	0	0	0	0.020233	2	6234	6234;6262		63.961	29.559	1	325230			843	5447	505	505	948;949	948					0.02820824126365551
ALQEIYNQK	9	Unmodified	_ALQEIYNQK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3;ENST00000484865.1_1_21:45391291-45401085:+|nuORF	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8136596679688	2	553.795663	1105.57677	0.62272	0.00034486	-0.23582	-0.0001306	0.3869	0.00021426	553.7955557877825	32.407	0.47097	32.462	32.233	32.704	0.055309					35	16	3	0	0	0	0.14786	1	6220	6220		31.268	9.7314	1	243120			844	5447	505	505	950	950					0.02820824126365551
ALQEIYNQK	9	Unmodified	_ALQEIYNQK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3;ENST00000484865.1_1_21:45391291-45401085:+|nuORF	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.7855834960938	2	553.795663	1105.57677	0.31972	0.00017706	0.00933	5.1669E-06	0.32905	0.00018222	553.7957529840018	32.474	0.485	32.528	32.306	32.791	0.054375					49	17	4	0	0	0	0.18208	1	6189	6189		26.268	5.8145	1	256410			845	5447	505	505	951	951					0.02820824126365551
ALQEVQLKETI	11	Unmodified	_ALQEVQLKETI_					0	0	0		nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.5715637207031	3	424.578365	1270.71327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.867	1	43.951	43.451	44.451	0.083996								0	0	0	0.31807	1	9663	9663		8.7518	1.2747	1				846	3195	506	506	952	952					0.08873893566237712
ALQHVVKVL	9	Unmodified	_ALQHVVKVL_					0	0	0		ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.3484191894531	2	503.824027	1005.6335	0.49598	0.00024989	0.20413	0.00010285	0.70012	0.00035274	503.824114218786	32.633	0.39477	32.633	32.5	32.895	0					19	13	2	0	0	0	0.25202	1	6233	6233		6.7232	0	1	102550			847	2209	507	507	953	953					0.13090916473572634
ALQKHYANRV	10	Unmodified	_ALQKHYANRV_					0	0	0			REV__ENST00000502634.1_1_5:20304521-20305535:-|nuORF	REV__ENST00000502634.1_1_5:20304521-20305535:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3238525390625	2	600.335821	1198.65709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.64	1	105.64	105.14	106.14	-0.0027847								0	0	0	0.37664	1	27981	27981		3.5965	0.60125	1		+		848	21719	508	508	954	954					0.06570730240059675
ALQQMRLF	8	Unmodified	_ALQQMRLF_					0	0	0			REV__nc|ENSG00000126602|Q12931-2|TRAP1	REV__nc|ENSG00000126602|Q12931-2|TRAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.76617431640625	2	503.778762	1005.54297	0.10779	5.43E-05	-1.2106	-0.00060985	-1.1028	-0.00055555	503.7783155692342	23.017	0.83567	22.929	22.435	23.27	-0.087608					69	29	3	0	0	0	0.4419	1	3325	3325		8.5933	0.68312	1	140720	+		849	15317	509	509	955	955					0.04042124153647819
ALQRPGIRRVI	11	Unmodified	_ALQRPGIRRVI_					0	0	0		ENSG00000126814|ENST00000261249|TRMT5	ENSG00000126814|ENST00000261249|TRMT5	ENSG00000126814|ENST00000261249|TRMT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.94207763671875	3	426.942084	1277.80442	0.27542	0.00011759	-0.58148	-0.00024826	-0.30606	-0.00013067	426.941917602408	37.542	1.7511	37.542	37.207	38.958	0					188	62	6	0	0	0	0.28246	2	7778	7778;7824		23.801	2.5597	1	10811000			850	3293	510	510	956;957	956					0.1766324684490428
ALQRPGIRRVI	11	Unmodified	_ALQRPGIRRVI_					0	0	0		ENSG00000126814|ENST00000261249|TRMT5	ENSG00000126814|ENST00000261249|TRMT5	ENSG00000126814|ENST00000261249|TRMT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.94195556640625	3	426.942084	1277.80442	-0.019299	-8.2396E-06	-0.27445	-0.00011717	-0.29375	-0.00012541	426.94206110226315	37.484	1.5871	37.572	37.193	38.78	0.087406					185	57	5	0	0	0	0.33902	1	7796	7796		18.721	1.8828	1	9992500			851	3293	510	510	958	958					0.1766324684490428
ALQRPGIRRVI	11	Unmodified	_ALQRPGIRRVI_					0	0	0		ENSG00000126814|ENST00000261249|TRMT5	ENSG00000126814|ENST00000261249|TRMT5	ENSG00000126814|ENST00000261249|TRMT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.9421081542969	3	426.942084	1277.80442	-0.025259	-1.0784E-05	-0.20934	-8.9376E-05	-0.2346	-0.00010016	426.94207055821585	37.464	1.6407	37.557	37.222	38.863	0.093018					192	59	5	0	0	0	0.32895	1	7753	7753		19.626	1.2862	1	10075000			852	3293	510	510	959	959					0.1766324684490428
ALQRSVQLAIE	11	Unmodified	_ALQRSVQLAIE_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	613.8464965820312	2	614.356419	1226.69829	0.070406	4.3254E-05	-1.2411	-0.00076247	-1.1707	-0.00071922	614.355773033789	30.897	0.77506	30.925	30.638	31.413	0.027946					79	27	4	0	0	0	0.32855	1	5637	5637		10.8	2.0541	1	687590			853	461	511	511	960	960					0.09400446488916714
ALQVRQRPG	9	Unmodified	_ALQVRQRPG_					0	0	0		ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2415161132812	2	512.804157	1023.59376	0.2178	0.00011169	2.1477	0.0011014	2.3655	0.0012131	512.805094384343	24.054	0.50539	23.982	23.728	24.234	-0.072559					31	16	3	0	0	0	0.25526	1	3673	3673		7.9102	2.6795	1	56666			854	12118	512	512	961	961					0.08290789522857267
ALRCYFLNNN	10	Unmodified	_ALRCYFLNNN_					0	0	0			REV__ENST00000565516.5_1_16:71913820-71913961:-|nuORF	REV__ENST00000565516.5_1_16:71913820-71913961:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.19793701171875	3	409.869485	1226.58663	-0.24891	-0.00010202	1.1627	0.00047656	0.9138	0.00037454	409.8695943535795	15.909	0.11359	15.909	15.867	15.981	0					5	3	2	0	0	0	0.3994	1	1170	1170		3.5871	1.5011	1	13722	+		855	22358	513	513	962	962					-0.017603111398784677
ALRDRHWKELM	11	Unmodified	_ALRDRHWKELM_					0	0	0		DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant;ENSG00000197653|ENST00000673944|DNAH10;nc|ENSG00000197653|Q8IVF4|DNAH10	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.59442138671875	3	485.594355	1453.76124	0.24056	0.00011682	-0.41684	-0.00020242	-0.17628	-8.5601E-05	485.92849478073447	24.281	1.1732	24.209	23.728	24.901	-0.072559					123	39	5	0	0	0	0.44966	1	3694	3694		4.7159	0.59929	1	569220			856	267	514	514	963	963					0.05250689005265485
ALRDRHWKELM	11	Unmodified	_ALRDRHWKELM_					0	0	0		DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant;ENSG00000197653|ENST00000673944|DNAH10;nc|ENSG00000197653|Q8IVF4|DNAH10	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.59423828125	3	485.594355	1453.76124	0.20546	9.9771E-05	-0.4	-0.00019424	-0.19454	-9.4468E-05	485.59421242917324	24.313	1.035	24.274	23.82	24.855	-0.038927					123	35	5	0	0	0	0.45202	1	3692	3692		4.4062	0.56024	1	580470			857	267	514	514	964	964					0.05250689005265485
ALRDRRRT	8	Unmodified	_ALRDRRRT_					0	0	0			REV__ENST00000534835.5_1_12:16500588-16501849:+|nuORF	REV__ENST00000534835.5_1_12:16500588-16501849:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.31396484375	2	522.312681	1042.61081	0.55577	0.00029029	0.94051	0.00049124	1.4963	0.00078153	522.3132737215424	21.18	0.66057	21.18	20.912	21.573	0					53	22	3	0	0	0	0.45645	1	2732	2732		3.5965	3.5965	1	154600	+		858	22061	515	515	965	965					0.09120710128649989
ALREKLAL	8	Unmodified	_ALREKLAL_					0	0	0		ENSG00000160813|ENST00000292330|PPP1R35	ENSG00000160813|ENST00000292330|PPP1R35	ENSG00000160813|ENST00000292330|PPP1R35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7950439453125	2	457.295102	912.575651	0.034123	1.5604E-05	-0.70117	-0.00032064	-0.66705	-0.00030504	457.2951027161086	61.971	1.6803	61.971	61.437	63.117	0					201	62	5	0	0	0	0.15515	1	15209	15209		50.855	9.0154	1	9957200			859	5492	516	516	966	966					0.11586654548113984
ALREKLAL	8	Unmodified	_ALREKLAL_					0	0	0		ENSG00000160813|ENST00000292330|PPP1R35	ENSG00000160813|ENST00000292330|PPP1R35	ENSG00000160813|ENST00000292330|PPP1R35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7951965332031	2	457.295102	912.575651	-0.063295	-2.8944E-05	-0.64231	-0.00029372	-0.7056	-0.00032267	457.29513339968594	61.933	1.4827	61.924	61.377	62.86	-0.0085526					171	54	5	0	0	0	0.15515	1	15195	15195		50.855	9.0154	1	9408700			860	5492	516	516	967	967					0.11586654548113984
ALRLLEVQVAT	11	Unmodified	_ALRLLEVQVAT_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2472229003906	3	404.915201	1211.72377	-0.062959	-2.5493E-05	-2.1327	-0.00086355	-2.1956	-0.00088904	404.91564620819906	16.984	2.2186	16.924	16.237	18.456	-0.060429					254	78	4	0	0	0	0.43513	1	1380	1380		6.6235	0.43161	1	1262300			861	8656	517	517	968	968					0.12637921011310027
ALRLPSRWA	9	Unmodified	_ALRLPSRWA_					0	0	0		ENST00000379391.7_2_12:57451973-57452108:-|nuORF	ENST00000379391.7_2_12:57451973-57452108:-|nuORF	ENST00000379391.7_2_12:57451973-57452108:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.8002319335938	2	535.3169	1068.61925	-0.010173	-5.4458E-06	0.01541	8.2491E-06	0.0052369	2.8034E-06	535.8190338696627	35.365	0.22054	35.441	35.288	35.509	0.075306					9	7	2	0	0	0	0.25323	1	7047	7047		10.074	2.7847	1	218900			862	9965	518	518	969	969					0.08768264045261276
ALRLVSLI	8	Unmodified	_ALRLVSLI_					0	0	0			REV__ENST00000479887.1_1_7:143947766-143948387:-|nuORF	REV__ENST00000479887.1_1_7:143947766-143948387:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.8000793457031	2	442.80002	883.585488	0.27886	0.00012348	-0.11904	-5.2711E-05	0.15982	7.0767E-05	442.79987564364427	52.661	0.87619	52.661	52.382	53.259	0					64	31	4	0	0	0	0.079438	2	12347	12347;12448		64.236	5.5575	1	2138700	+		863	19029	519	519	970;971	970					0.13903842553509094
ALRLWEQL	8	Unmodified	_ALRLWEQL_					0	0	0			REV__nc|ENSG00000197256|Q63ZY3-3|KANK2	REV__nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.780029296875	2	514.798009	1027.58147	0.3395	0.00017477	-0.50983	-0.00026246	-0.17033	-8.7685E-05	514.797665994604	40.358	0.76279	40.458	40.173	40.936	0.099407					63	27	3	0	0	0	0.43043	1	8694	8694		12.532	0	1	1807700	+		864	18722	520	520	972	972					0.06877753059779934
ALRPADIQV	9	Unmodified	_ALRPADIQV_					0	0	0		nc|ENSG00000163803|Q6P1J6-4|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1;nc|ENSG00000163803|Q6P1J6-2|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.24749755859375	2	491.787641	981.56073	0.36549	0.00017974	2.6561	0.0013062	3.0216	0.001486	491.788899777641	74.806	0.26684	74.858	74.758	75.024	0.052361					11	9	2	0	0	0	0.22596	1	19213	19213		15.847	1.0089	1	95294			865	5734	521	521	973	973					0.06921162680134785
ALRPRPSVYIP	11	Unmodified	_ALRPRPSVYIP_					0	0	0		ENSG00000105655|ENST00000338128|ISYNA1;nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF;nc|ENSG00000105655|Q9NPH2-3|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.8775634765625	2	634.877322	1267.74009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.47	1	111.46	110.96	111.96	-0.013939								0	0	0	0.38114	1	29002	29002		1.3295	0.13619	1				866	2003	522	522	974	974					0.11693046968093768
ALRRAEELQK	10	Unmodified	_ALRRAEELQK_					0	0	0			REV__ENSG00000096401|ENST00000371477|CDC5L	REV__ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2467041015625	3	405.238566	1212.69387	-0.31679	-0.00012838	0.62278	0.00025237	0.30598	0.000124	405.23881263560475	16.924	0.1375	16.81	16.723	16.861	-0.11434					6	4	2	0	0	0	0.35624	1	1464	1464		11.518	0.71837	1	23868	+		867	14114	523	523	975	975					0.09602982065962351
ALRRAEELQK	10	Unmodified	_ALRRAEELQK_					0	0	0			REV__ENSG00000096401|ENST00000371477|CDC5L	REV__ENSG00000096401|ENST00000371477|CDC5L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.9154052734375	3	405.238566	1212.69387	-0.31679	-0.00012838	0.62278	0.00025237	0.30598	0.000124	405.23881263560475	16.924	0.1375	16.81	16.723	16.861	-0.11434					6	4	2	0	0	0	0.31746	1	1492	1492		9.544	2.0669	1	23868	+		868	14114	523	523	976	976					0.09602982065962351
ALRTGPTAI	9	Unmodified	_ALRTGPTAI_					0	0	0			REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2690734863281	2	450.269084	898.523616	0.29824	0.00013429	-0.58414	-0.00026302	-0.2859	-0.00012873	450.2690698104063	30.115	1.7525	30.115	29.801	31.553	0					184	62	5	0	0	0	0.068501	1	5419	5419		46.021	2.0391	1	19497000	+		869	15736	524	524	977	977					0.07029491134358068
ALRWEAPHRE	10	Unmodified	_ALRWEAPHRE_					0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.8316650390625	2	632.830903	1263.64725	0.68695	0.00043472	-0.037648	-2.3825E-05	0.6493	0.0004109	632.8309748728336	32.32	0.51951	32.375	32.126	32.645	0.055313					38	18	3	0	0	0	0.40262	1	6161	6161		2.9952	0.49676	1	222710	+		870	14997	525	525	978	978					0.025975422347073618
ALRWRKRRWEW	11	Unmodified	_ALRWRKRRWEW_					0	0	0		ENST00000456291.1_3_9:123638279-123638699:-|nuORF	ENST00000456291.1_3_9:123638279-123638699:-|nuORF	ENST00000456291.1_3_9:123638279-123638699:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.22027587890625	4	411.485197	1641.91168	0.10739	4.4191E-05	-0.33494	-0.00013782	-0.22755	-9.3631E-05	411.48458246634317	19.642	0.36717	19.526	19.177	19.544	-0.11592					12	12	2	0	0	0	0.33352	1	2202	2202		0	0	1	18000			871	10695	526	526	979	979					0.1164021677909659
ALSALPLAL	9	Unmodified	_ALSALPLAL_					0	0	0		ENST00000432920.2_1_1:226111853-226111940:-|nuORF	ENST00000432920.2_1_1:226111853-226111940:-|nuORF	ENST00000432920.2_1_1:226111853-226111940:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8260803222656	2	434.778754	867.542954	-0.23189	-0.00010082	2.2035	0.00095804	1.9716	0.00085722	434.77962741241646	41.858	0.82518	41.858	41.799	42.624	0					44	30	2	0	0	0	0.24913	1	9194	9194		7.9102	2.6795	1	1175400			872	10486	527	527	980	980					0.10388447425270897
ALSEKKPTV	9	Unmodified	_ALSEKKPTV_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.3014831542969	2	486.78985	971.565146	0.45165	0.00021986	-0.55284	-0.00026911	-0.10119	-4.9258E-05	486.78981884027235	59.347	0.31957	59.333	59.196	59.515	-0.014267					15	10	2	0	0	0	0.21905	1	14423	14423		16.942	4.4107	1	61353			873	6689	528	528	981	981					0.07822627103053037
ALSELHTVE	9	Unmodified	_ALSELHTVE_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8034362792969	2	499.761289	997.508025	0.20585	0.00010287	0.47754	0.00023866	0.68339	0.00034153	499.76110940403726	23.575	0.63836	23.575	23.39	24.029	0					33	21	2	0	0	0	0.24913	1	3555	3555		7.9102	0	1	143770			874	3321	529	529	982	982					0.009171598266561887
ALSFQAIL	8	Unmodified	_ALSFQAIL_					0	0	0		ENST00000514146.1_1_5:180690917-180691082:+|nuORF	ENST00000514146.1_1_5:180690917-180691082:+|nuORF	ENST00000514146.1_1_5:180690917-180691082:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.7552490234375	2	431.755278	861.496004	-0.019138	-8.2628E-06	1.7524	0.0007566	1.7332	0.00074834	431.7552183176129	72.769	2.8938	72.769	71.233	74.127	0					133	103	2	0	0	0	0.13961	2	18542	18542;18590		53.576	7.5546	1	895440			875	11410	530	530	983;984	983					0.05971587874148554
ALSFQAIL	8	Unmodified	_ALSFQAIL_					0	0	0		ENST00000514146.1_1_5:180690917-180691082:+|nuORF	ENST00000514146.1_1_5:180690917-180691082:+|nuORF	ENST00000514146.1_1_5:180690917-180691082:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.75518798828125	2	431.755278	861.496004	-0.001927	-8.3198E-07	1.664	0.00071843	1.662	0.0007176	431.75520634144095	72.731	1.7965	72.785	72.03	73.827	0.053841					150	65	4	0	0	0	0.13961	2	18516	18516;18562		53.576	9.7173	1	950350			876	11410	530	530	985;986	985					0.05971587874148554
ALSFQAIL	8	Unmodified	_ALSFQAIL_					0	0	0		ENST00000514146.1_1_5:180690917-180691082:+|nuORF	ENST00000514146.1_1_5:180690917-180691082:+|nuORF	ENST00000514146.1_1_5:180690917-180691082:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.7552185058594	2	431.755278	861.496004	0.05677	2.4511E-05	1.4304	0.00061757	1.4871	0.00064208	431.755161793254	72.819	1.9593	72.79	71.923	73.882	-0.029305					100	70	2	0	0	0	0.058048	2	18582	18536;18582		74.396	10.833	1	1018100			877	11410	530	530	987;988	988					0.05971587874148554
ALSHSTGASI	10	Unmodified	_ALSHSTGASI_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7561340332031	2	472.245806	942.47706	0.11325	5.3481E-05	-0.18108	-8.5516E-05	-0.067835	-3.2035E-05	472.24572911243706	30.978	0.30128	31.005	30.81	31.111	0.027157					12	10	2	0	0	0	0.29038	1	5687	5687		24.021	4.6586	1	89198	+		878	14382	531	531	989	989					0.003520065124348548
ALSLFLFLA	9	Unmodified	_ALSLFLFLA_					0	0	0		ENST00000581424.1_1_17:61228485-61228857:+|nuORF	ENST00000581424.1_1_17:61228485-61228857:+|nuORF	ENST00000581424.1_1_17:61228485-61228857:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2451171875	2	497.802229	993.589904	0.2686	0.00013371	-3.7306	-0.0018571	-3.462	-0.0017234	497.80008979864846	25.481	0.32696	25.481	25.296	25.623	0					17	10	2	0	0	0	0.25526	1	4044	4044		7.9102	0.62092	1	71404			879	12083	532	532	990	990					0.09285306976414631
ALSLHAFSVRK	11	Unmodified	_ALSLHAFSVRK_					0	0	0			REV__nc|ENSG00000239732|Q9NR96-2|TLR9	REV__nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2437438964844	3	410.24354	1227.70879	-0.0068587	-2.8137E-06	0.099	4.0614E-05	0.092141	3.78E-05	410.2435344654244	33.194	0.49949	33.249	32.903	33.403	0.054371					33	17	2	0	0	0	0.39244	1	6424	6424		12.228	4.7505	1	954570	+		880	19164	533	533	991	991					0.10404473933976988
ALSLPAATSL	10	Unmodified	_ALSLPAATSL_					0	0	0		ENST00000397354.7_1_X:39933702-39933888:-|nuORF	ENST00000397354.7_1_X:39933702-39933888:-|nuORF	ENST00000397354.7_1_X:39933702-39933888:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2766418457031	2	472.276575	942.538597	-0.0017768	-8.3913E-07	-0.53707	-0.00025365	-0.53885	-0.00025448	472.2764823435494	30.963	0.83517	30.99	30.665	31.501	0.027946					64	29	3	0	0	0	0.21644	1	5720	5720		30.637	5.2372	1	790080			881	10137	534	534	992	992					0.06502938211713172
ALSNQKFRDFR	11	Unmodified	_ALSNQKFRDFR_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000465703.5_1_6:31929724-31930734:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.21917724609375	3	461.249354	1380.72623	-0.045903	-2.1173E-05	-0.42039	-0.0001939	-0.46629	-0.00021508	461.249116300487	42.821	0.49131	42.821	42.595	43.087	0					24	17	2	0	0	0	0.33122	1	9318	9318		4.4062	0.52982	1	236860			882	8219	535	535	993	993					0.0510976946898154
ALSPIVKQV	9	Unmodified	_ALSPIVKQV_					0	0	0			REV__nc|ENSG00000188523|Q6ZQR2|CFAP77	REV__nc|ENSG00000188523|Q6ZQR2|CFAP77	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.802978515625	2	477.80276	953.590967	-0.042521	-2.0316E-05	0.6678	0.00031908	0.62528	0.00029876	477.8029608230748	42.18	1.108	42.18	41.9	43.008	0					74	39	3	0	0	0	0.10197	2	9178	9130;9178		37.974	1.847	1	1858100	+		883	23143	536	536	994;995	995					0.11231521345325746
ALSPIVKQV	9	Unmodified	_ALSPIVKQV_					0	0	0			REV__nc|ENSG00000188523|Q6ZQR2|CFAP77	REV__nc|ENSG00000188523|Q6ZQR2|CFAP77	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.8030700683594	2	477.80276	953.590967	0.34983	0.00016715	0.68398	0.00032681	1.0338	0.00049395	477.8028149876123	42.091	1.0448	42.176	41.906	42.951	0.085197					97	37	4	0	0	0	0.079752	1	9126	9126		41.84	0	1	1685400	+		884	23143	536	536	996	996					0.11231521345325746
ALSPIVKQV	9	Unmodified	_ALSPIVKQV_					0	0	0			REV__nc|ENSG00000188523|Q6ZQR2|CFAP77	REV__nc|ENSG00000188523|Q6ZQR2|CFAP77	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.8030700683594	2	477.80276	953.590967	0.40704	0.00019449	0.67616	0.00032307	1.0832	0.00051756	477.8028801867581	42.024	0.88144	42.116	41.836	42.717	0.091362					81	30	4	0	0	0	0.057976	3	9109	9078;9109;9159		49.933	8.0934	1	1836700	+		885	23143	536	536	997;998;999	998					0.11231521345325746
ALSPIVKQV	9	Unmodified	_ALSPIVKQV_					0	0	0			REV__nc|ENSG00000188523|Q6ZQR2|CFAP77	REV__nc|ENSG00000188523|Q6ZQR2|CFAP77	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	477.80276	953.590967	0.34983	0.00016715	0.68398	0.00032681	1.0338	0.00049395	477.8028149876123	42.091	1.0448	42.176	41.906	42.951	0.085197	0.018848	9.4354E-06	NaN	49.933	97	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1685400	+		886	23143	536	536							0.11231521345325746
ALSPRLLL	8	Unmodified	_ALSPRLLL_					0	0	0		ENST00000422351.5_1_2:43266302-43266656:-|nuORF	ENST00000422351.5_1_2:43266302-43266656:-|nuORF	ENST00000422351.5_1_2:43266302-43266656:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.93975830078125	2	441.792195	881.569838	0.035299	1.5595E-05	-0.56482	-0.00024953	-0.52952	-0.00023394	441.79199364543973	49.254	0.25327	49.286	49.072	49.326	0.032043					12	8	2	0	0	0	0.27344	1	11286	11286		26.884	0	1	98551			887	10379	537	537	1000	1000					0.12431556036472102
ALSRVKEAK	9	Unmodified	_ALSRVKEAK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3094482421875	2	501.308741	1000.60293	0.0093494	4.6869E-06	0.73744	0.00036969	0.74679	0.00037437	501.3090670620389	12.83	0.58663	12.83	12.641	13.227	0					36	20	2	0	0	0	0.28225	2	255	255;266		11.495	1.4208	1	198150			888	4787	538	538	1001;1002	1001					0.10265138088516323
ALSTCGSHF	9	Unmodified	_ALSTCGSHF_					0	0	0		ENSG00000172208|ENST00000624868|OR4X2;ENSG00000183389|ENST00000641156|OR56A4;ENSG00000180934|ENST00000641900|OR56A1;ENSG00000184478|ENST00000641160|OR56A3;nc|ENSG00000180934|Q8NGH5|OR56A1	ENSG00000172208|ENST00000624868|OR4X2	ENSG00000172208|ENST00000624868|OR4X2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.77154541015625	2	461.708002	921.401452	0.051454	2.3757E-05	0.4645	0.00021447	0.51596	0.00023822	461.70815612974314	70.993	1.2574	70.993	70.325	71.582	0					71	44	2	0	0	0	0.25417	1	17852	17852		4.756	0	1	564190			889	6611	539	539	1003	1003					-0.06239293939495383
ALSVSVFNNK	10	Unmodified	_ALSVSVFNNK_					0	0	0		ENST00000473604.2_1_9:132580793-132585603:-|nuORF;ENSG00000136827|ENST00000351698|TOR1A	ENST00000473604.2_1_9:132580793-132585603:-|nuORF	ENST00000473604.2_1_9:132580793-132585603:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.9854125976562	2	539.798206	1077.58186	0.47987	0.00025903	2.421	0.0013069	2.9009	0.0015659	539.7984995415339	99.181	0.10164	99.174	99.13	99.231	-0.006897					17	13	2	0	0	0	0.31581	1	26577	26577		11.495	5.2889	1	50209			890	4002	540	540	1004	1004					0.0461712798901317
ALSVTKKQSQ	10	Unmodified	_ALSVTKKQSQ_					0	0	0			REV__nc|ENSG00000114439|Q8WY36-3|BBX	REV__nc|ENSG00000114439|Q8WY36-3|BBX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3170776367188	2	545.316763	1088.61897	0.6091	0.00033216	-0.26726	-0.00014574	0.34184	0.00018641	545.3166247243353	80.334	3.1168	80.308	79.473	82.59	-0.026817					523	123	6	0	0	0	0.37133	1	21231	21231		8.7454	0	1	17985000	+		891	22953	541	541	1005	1005					0.07820799534761136
ALSVYPKKNN	10	Unmodified	_ALSVYPKKNN_					0	0	0			REV__ENSG00000076067|ENST00000262031|RBMS2	REV__ENSG00000076067|ENST00000262031|RBMS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3300170898438	2	567.319306	1132.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.82	1	84.82	84.32	85.32	0								0	0	0	0.33404	1	22251	22251		21.537	5.6898	1		+		892	13823	542	542	1006	1006					0.06305103397380662
ALTACYAFRD	10	Unmodified	_ALTACYAFRD_					0	0	0			REV__ENSG00000150627|ENST00000508596|WDR17	REV__ENSG00000150627|ENST00000508596|WDR17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.2344360351562	2	565.768591	1129.52263	-0.11406	-6.453E-05	0.26414	0.00014944	0.15008	8.4911E-05	565.7683158962375	38.851	0.7231	38.851	38.518	39.242	0					56	25	3	0	0	0	0.31691	1	8228	8228		9.3831	1.473	1	790240	+		893	16504	543	543	1007	1007					-0.03695091296845021
ALTKNILTVTY	11	Unmodified	_ALTKNILTVTY_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.8637084960938	2	618.863546	1235.71254	0.099785	6.1753E-05	-0.011045	-6.8351E-06	0.08874	5.4918E-05	618.8634826226782	53.839	0.79007	53.895	53.585	54.375	0.056255					78	29	4	0	0	0	0.36943	1	12727	12727		15.248	1.6336	1	1360500	+		894	15759	544	544	1008	1008					0.1041109891718861
ALTKNILTVTY	11	Unmodified	_ALTKNILTVTY_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	618.863546	1235.71254	0.099785	6.1753E-05	-0.011045	-6.8351E-06	0.08874	5.4918E-05	618.8634826226782	53.839	0.79007	53.895	53.585	54.375	0.056255	0.012732	0.0001704	NaN	15.248	78	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1360500	+		895	15759	544	544							0.1041109891718861
ALTKNILTVTY	11	Unmodified	_ALTKNILTVTY_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	618.863546	1235.71254	0.3341	0.00020676	-0.15087	-9.337E-05	0.18323	0.00011339	618.863415794904	53.912	0.91774	53.902	53.611	54.529	-0.0096054	0.020014	-2.6649E-06	NaN	15.248	74	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1361600	+		896	15759	544	544							0.1041109891718861
ALTLNAILL	9	Unmodified	_ALTLNAILL_					0	0	0			REV__ENSG00000139572|ENST00000267015|GPR84	REV__ENSG00000139572|ENST00000267015|GPR84	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2868347167969	2	471.305136	940.595718	0.52649	0.00024814	-0.10642	-5.0157E-05	0.42007	0.00019798	471.3050556059098	50.709	0.5448	50.709	50.433	50.978	0					34	19	2	0	0	0	0.24289	1	11697	11697		18.146	2.2992	1	365130	+		897	15991	545	545	1009	1009					0.12304405488100656
ALTLNAILL	9	Unmodified	_ALTLNAILL_					0	0	0			REV__ENSG00000139572|ENST00000267015|GPR84	REV__ENSG00000139572|ENST00000267015|GPR84	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2867431640625	2	471.305136	940.595718	0.76196	0.00035912	-0.36768	-0.00017329	0.39428	0.00018583	471.3048992886966	50.671	0.66653	50.691	50.413	51.079	0.020691					38	24	2	0	0	0	0.24471	1	11680	11680		17.113	2.2746	1	363290	+		898	15991	545	545	1010	1010					0.12304405488100656
ALTPVQALI	9	Unmodified	_ALTPVQALI_					0	0	0		nc|ENSG00000174886|Q86Y39-2|NDUFA11	nc|ENSG00000174886|Q86Y39-2|NDUFA11	nc|ENSG00000174886|Q86Y39-2|NDUFA11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.2774353027344	2	463.289485	924.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.896	1	49.917	49.417	50.417	0.020691								0	0	0	0.21357	1	11521	11521		18.135	1.1927	1				899	12847	546	546	1011	1011					0.09911832453997249
ALTPYPLLK	9	Unmodified	_ALTPYPLLK_					0	0	0			REV__nc|ENSG00000105619|P0C1Z6-2|TFPT	REV__nc|ENSG00000105619|P0C1Z6-2|TFPT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.79046630859375	2	508.312961	1014.61137	0.43622	0.00022174	2.6257	0.0013347	3.062	0.0015564	508.3136841761113	54.161	0.52338	54.224	53.96	54.483	0.063202					42	19	3	0	0	0	0.20651	1	12887	12887		14.838	4.0143	1	221440	+		900	14470	547	547	1012	1012					0.10464692005143661
ALTRAFGFD	9	Unmodified	_ALTRAFGFD_					0	0	0			REV__ENSG00000006837|ENST00000265334|CDKL3	REV__ENSG00000006837|ENST00000265334|CDKL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2898864746094	2	499.258717	996.50288	0.36455	0.000182	0.93162	0.00046512	1.2962	0.00064712	499.25916882098437	47.014	0.64261	47.066	46.79	47.433	0.05257					39	23	2	0	0	0	0.2451	1	10742	10742		15.847	15.847	1	994400	+		901	13376	548	548	1013	1013					0.0044890075471357704
ALTSSLPPAG	10	Unmodified	_ALTSSLPPAG_					0	0	0		ENST00000389341.9_1_19:42594426-42594810:-|nuORF	ENST00000389341.9_1_19:42594426-42594810:-|nuORF	ENST00000389341.9_1_19:42594426-42594810:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7777404785156	2	457.2531	912.491647	-0.23696	-0.00010835	0.060578	2.7699E-05	-0.17639	-8.0653E-05	457.2531778688535	13.162	0.19245	13.162	13.09	13.282	0					9	6	2	0	0	0	0.32054	1	371	371		3.2813	0	1	20520			902	10020	549	549	1014	1014					0.031900786605774556
ALTTGSLPTF	10	Unmodified	_ALTTGSLPTF_					0	0	0		nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO;ENST00000465745.6_1_9:35094156-35095562:-|nuORF;ENST00000474436.1_1_9:35093318-35095562:-|nuORF	nc|ENSG00000165282|Q8TEQ8-2|PIGO	nc|ENSG00000165282|Q8TEQ8-2|PIGO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.8445129394531	2	504.274032	1006.53351	0.16845	8.4943E-05	-0.59746	-0.00030128	-0.42901	-0.00021634	504.27355749795913	73.924	1.4263	73.924	73.081	74.507	0					128	49	4	0	0	0	0.30079	1	19078	19078		14.838	0.25658	1	2031100			903	5946	550	550	1015	1015					0.030506343490742438
ALTVDRTYSYP	11	Unmodified	_ALTVDRTYSYP_					0	0	0		ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.7560119628906	3	429.218949	1284.63502	0.069739	2.9933E-05	-3.2679	-0.0014027	-3.1982	-0.0013727	429.21747393826627	49.261	0.13244	49.261	49.218	49.351	0					7	4	2	0	0	0	0.3325	1	11349	11349		4.1166	0	1	54236			904	725	551	551	1016	1016					0.0040846098097517824
ALTVEEQSSTF	11	Unmodified	_ALTVEEQSSTF_					0	0	0			REV__nc|ENSG00000151164|Q6WBX8-3|RAD9B	REV__nc|ENSG00000151164|Q6WBX8-3|RAD9B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.1881103515625	3	404.531192	1210.57175	-0.030419	-1.2306E-05	1.4602	0.00059069	1.4298	0.00057839	404.8661497035362	23.955	0.37053	23.916	23.711	24.081	-0.038927					14	12	2	0	0	0	0.33149	1	3601	3601		2.4348	0	1	36111	+		905	16530	552	552	1017	1017					-0.025115245269034858
ALVASWLACF	10	Unmodified	_ALVASWLACF_					0	0	0			REV__ENSG00000163661|ENST00000295927|PTX3	REV__ENSG00000163661|ENST00000295927|PTX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8138427734375	2	540.78097	1079.54739	0.38913	0.00021043	1.3732	0.00074262	1.7624	0.00095305	540.781690353816	28.766	0.54595	28.761	28.411	28.957	-0.0042572					32	18	2	0	0	0	0.3156	1	5081	5081		6.7232	0	1	123540	+		906	17078	553	553	1018	1018					0.010795885765219282
ALVKVKIQPPF	11	Unmodified	_ALVKVKIQPPF_					0	0	0		ENST00000592946.1_1_19:44611552-44611663:-|nuORF	ENST00000592946.1_1_19:44611552-44611663:-|nuORF	ENST00000592946.1_1_19:44611552-44611663:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.522216796875	3	413.932303	1238.77508	0.18501	7.6583E-05	1.4051	0.00058163	1.5902	0.00065822	413.9326039831077	41.403	0.4872	41.493	41.079	41.566	0.090252					35	17	3	0	0	0	0.33326	1	8846	8846		0.50596	0	1	390500			907	12205	554	554	1019	1019					0.16524289776043588
ALVKVKIQPPF	11	Unmodified	_ALVKVKIQPPF_					0	0	0		ENST00000592946.1_1_19:44611552-44611663:-|nuORF	ENST00000592946.1_1_19:44611552-44611663:-|nuORF	ENST00000592946.1_1_19:44611552-44611663:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5220642089844	3	413.932303	1238.77508	0.18139	7.5082E-05	1.2891	0.00053362	1.4705	0.0006087	414.2672401852925	41.261	0.43716	41.358	41.04	41.477	0.096626					24	15	2	0	0	0	0.33326	1	8798	8798		1.4551	0.12547	1	674070			908	12205	554	554	1020	1020					0.16524289776043588
ALVLAPRVL	9	Unmodified	_ALVLAPRVL_					0	0	0		ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.3066101074219	2	476.32112	950.627687	0.10813	5.1505E-05	0.0089283	4.2527E-06	0.11706	5.5758E-05	476.3210470506297	67.178	0.40431	67.178	66.994	67.398	0					19	13	2	0	0	0	0.23775	1	16889	16889		18.135	5.6034	1	135340			909	650	555	555	1021	1021					0.1503981796190601
ALVNKHAK	8	Unmodified	_ALVNKHAK_					0	0	0			REV__nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	REV__nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2192077636719	2	440.771794	879.529036	-0.10739	-4.7333E-05	-0.0064466	-2.8415E-06	-0.11383	-5.0174E-05	440.7717700699676	28.366	0.40322	28.362	28.167	28.57	-0.0042572					24	14	2	0	0	0	0.31375	1	4932	4932		26.341	1.6674	1	123560	+		910	17482	556	556	1022	1022					0.08445214716846294
ALVNKHAK	8	Unmodified	_ALVNKHAK_					0	0	0			REV__nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	REV__nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	440.771794	879.529036	-0.11661	-5.1399E-05	-0.060786	-2.6793E-05	-0.1774	-7.8192E-05	440.77174122141224	28.376	0.37093	28.376	28.207	28.578	0	0.0042938	-4.4385E-05	NaN	26.341	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167920	+		911	17482	556	556							0.08445214716846294
ALVNKHAK	8	Unmodified	_ALVNKHAK_					0	0	0			REV__nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	REV__nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	440.771794	879.529036	-0.15156	-6.6804E-05	0.016894	7.4465E-06	-0.13467	-5.9358E-05	440.7717846487108	28.376	0.50482	28.377	28.13	28.635	0.0004673	0.0053259	2.4093E-05	NaN	26.341	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90685	+		912	17482	556	556							0.08445214716846294
ALVPGPLTVL	10	Unmodified	_ALVPGPLTVL_					0	0	0		ENST00000596708.1_3_19:59066175-59066256:-|nuORF	ENST00000596708.1_3_19:59066175-59066256:-|nuORF	ENST00000596708.1_3_19:59066175-59066256:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.82122802734375	2	490.312961	978.611368	0.58152	0.00028513	-1.8977	-0.00093048	-1.3162	-0.00064535	490.31192226691473	50.082	0.37643	50.103	49.825	50.202	0.020691					17	13	2	0	0	0	0.29519	1	11567	11567		15.847	0	1	122500			913	12228	557	557	1023	1023					0.1212069200513497
ALVPLALL	8	Unmodified	_ALVPLALL_					0	0	0			REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2783508300781	2	405.278389	808.542226	0.086486	3.5051E-05	0.20554	8.3302E-05	0.29203	0.00011835	405.2783394229325	87.053	0.85658	87.053	86.728	87.584	0					72	35	3	0	0	0	0.1467	1	22931	22931		52.334	10.517	1	994450	+		914	14107	558	558	1024	1024					0.13029652776242528
ALVPLALL	8	Unmodified	_ALVPLALL_					0	0	0			REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2783203125	2	405.278389	808.542226	-0.051296	-2.0789E-05	0.25276	0.00010244	0.20146	8.1648E-05	405.27839014468634	86.927	0.82494	87.014	86.728	87.553	0.087097					82	35	3	0	0	0	0.20676	1	22868	22868		41.817	9.3636	1	723500	+		915	14107	558	558	1025	1025					0.13029652776242528
ALVPLALL	8	Unmodified	_ALVPLALL_					0	0	0			REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2783508300781	2	405.278389	808.542226	-0.051296	-2.0789E-05	0.25276	0.00010244	0.20146	8.1648E-05	405.27839014468634	86.927	0.82494	87.014	86.728	87.553	0.087097					82	35	3	0	0	0	0.26384	1	22916	22916		32.454	0	1	723500	+		916	14107	558	558	1026	1026					0.13029652776242528
ALVPLALL	8	Unmodified	_ALVPLALL_					0	0	0			REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2783508300781	2	405.278389	808.542226	0.055307	2.2415E-05	0.34047	0.00013799	0.39578	0.0001604	405.2783515324802	87.036	0.75047	87.03	86.747	87.498	-0.0056229					73	32	3	0	0	0	0.26384	1	22895	22895		41.817	0	1	802400	+		917	14107	558	558	1027	1027					0.13029652776242528
ALVPLALL	8	Unmodified	_ALVPLALL_					0	0	0			REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	405.278389	808.542226	0.086486	3.5051E-05	0.20554	8.3302E-05	0.29203	0.00011835	405.2783394229325	87.053	0.85658	87.053	86.728	87.584	0	0.020576	-4.8026E-05	NaN	52.334	72	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	994450	+		918	14107	558	558							0.13029652776242528
ALVPLYLTP	9	Unmodified	_ALVPLYLTP_					0	0	0			REV__nc|ENSG00000150556|Q8NI32|LYPD6B	REV__nc|ENSG00000150556|Q8NI32|LYPD6B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.3011169433594	2	493.799686	985.584819	0.47888	0.00023647	0.51298	0.00025331	0.99186	0.00048978	493.79960941219514	86.274	0.61899	86.358	86.162	86.781	0.084251					35	24	3	0	0	0	0.25811	1	22821	22821		2.3027	0	1	239850	+		919	16502	559	559	1028	1028					0.09145003113803796
ALVPLYLTP	9	Unmodified	_ALVPLYLTP_					0	0	0			REV__nc|ENSG00000150556|Q8NI32|LYPD6B	REV__nc|ENSG00000150556|Q8NI32|LYPD6B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.799686	985.584819	0.57571	0.00028429	0.1008	4.9773E-05	0.67651	0.00033406	493.79945024351434	86.428	0.50002	86.428	86.175	86.675	0	0.014568	-5.1604E-05	NaN	5.2307	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252440	+		920	16502	559	559							0.09145003113803796
ALVPLYLTP	9	Unmodified	_ALVPLYLTP_					0	0	0			REV__nc|ENSG00000150556|Q8NI32|LYPD6B	REV__nc|ENSG00000150556|Q8NI32|LYPD6B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.799686	985.584819	0.51834	0.00025596	-0.022042	-1.0885E-05	0.4963	0.00024507	493.7995260386343	86.464	0.61301	86.455	86.054	86.667	-0.0090027	0.041175	-0.00017292	NaN	5.2307	43	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179030	+		921	16502	559	559							0.09145003113803796
ALVVFFRLL	9	Unmodified	_ALVVFFRLL_					0	0	0		ENST00000486860.5_1_7:87838471-87849341:-|nuORF	ENST00000486860.5_1_7:87838471-87849341:-|nuORF	ENST00000486860.5_1_7:87838471-87849341:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8212280273438	2	539.344595	1076.67464	0.49995	0.00026965	-0.39224	-0.00021155	0.10771	5.8091E-05	539.3442037028702	63.118	0.61782	63.118	62.856	63.474	0					31	22	2	0	0	0	0.25417	1	15703	15703		4.756	0.42677	1	148670			922	11109	560	560	1029	1029					0.13936677513038376
ALVVFFRLL	9	Unmodified	_ALVVFFRLL_					0	0	0		ENST00000486860.5_1_7:87838471-87849341:-|nuORF	ENST00000486860.5_1_7:87838471-87849341:-|nuORF	ENST00000486860.5_1_7:87838471-87849341:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	539.344595	1076.67464	0.5406	0.00029157	-0.5368	-0.00028952	0.0037956	2.0472E-06	539.3442405374124	63.197	0.67662	63.189	62.86	63.537	-0.0085526	0.035464	-6.3379E-05	NaN	4.756	36	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218110			923	11109	560	560							0.13936677513038376
ALVVKRNNQFF	11	Unmodified	_ALVVKRNNQFF_					0	0	0		ENSG00000186526|ENST00000612078|CYP4F8	ENSG00000186526|ENST00000612078|CYP4F8	ENSG00000186526|ENST00000612078|CYP4F8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.6358947753906	3	445.922578	1334.7459	0.13644	6.0843E-05	-0.052802	-2.3546E-05	0.083642	3.7298E-05	445.92250411198023	33.867	0.46985	33.933	33.657	34.127	0.066704					35	16	3	0	0	0	0.3322	1	6575	6575		4.7159	0.30977	1	195580			924	7625	561	561	1030	1030					0.09192145479732972
ALVVLDRVGDE	11	Unmodified	_ALVVLDRVGDE_					0	0	0			REV__ENSG00000084444|ENST00000197268|FAM234B	REV__ENSG00000084444|ENST00000197268|FAM234B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.3134765625	2	593.327328	1184.6401	0.50177	0.00029772	0.5962	0.00035374	1.098	0.00065146	593.327838424544	89.578	0.9143	89.577	89.051	89.965	-0.00080872					102	63	2	0	0	0	0.45367	1	23777	23777		4.1895	0	1	154260	+		925	13946	562	562	1031	1031					0.0551676484365089
ALVYEEPII	9	Unmodified	_ALVYEEPII_					0	0	0			REV__ENSG00000121361|ENST00000240662|KCNJ8	REV__ENSG00000121361|ENST00000240662|KCNJ8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.7921142578125	2	523.792058	1045.56956	0.43247	0.00022652	0.31178	0.00016331	0.74425	0.00038983	523.7921649281176	41.026	0.66038	41.117	40.796	41.456	0.090252					50	24	3	0	0	0	0.22596	1	8796	8796		21.747	0	1	501160	+		926	15118	563	563	1032	1032					0.04860091525961252
ALVYEEPII	9	Unmodified	_ALVYEEPII_					0	0	0			REV__ENSG00000121361|ENST00000240662|KCNJ8	REV__ENSG00000121361|ENST00000240662|KCNJ8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	523.792058	1045.56956	0.29541	0.00015473	0.23901	0.00012519	0.53441	0.00027992	523.7920729442383	41.223	0.51114	41.223	40.96	41.471	0	0.092963	-1.2375E-05	NaN	21.747	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	407400	+		927	15118	563	563							0.04860091525961252
ALWLQRKG	8	Unmodified	_ALWLQRKG_					0	0	0		nc|ENSG00000112038|P35372-18|OPRM1	nc|ENSG00000112038|P35372-18|OPRM1	nc|ENSG00000112038|P35372-18|OPRM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8004150390625	2	486.292894	970.571235	0.31594	0.00015364	-1.3616	-0.00066213	-1.0456	-0.00050849	486.2921424366283	53.073	0.30532	53.064	52.837	53.142	-0.0096054					13	10	2	0	0	0	0.34185	1	12431	12431		5.7604	0	1	141520			928	12653	564	564	1033	1033					0.08477190125222478
ALWSTVSYVPP	11	Unmodified	_ALWSTVSYVPP_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5791320800781	3	407.216768	1218.62847	-0.27323	-0.00011126	-0.59263	-0.00024133	-0.86586	-0.00035259	407.21627494381465	28.513	0.36409	28.513	28.351	28.715	0.0004673					19	12	2	0	0	0	0.32667	1	4963	4963		10.315	4.1234	1	144270	+		929	17609	565	565	1034	1034					0.02790567820261458
ALWWSYLF	8	Unmodified	_ALWWSYLF_					0	0	0			REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2688598632812	2	543.276378	1084.5382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.126	1	89.125	88.625	89.625	-0.00080872								0	0	0	0.33276	1	23560	23560		22.453	1.999	1		+		930	18778	566	566	1035	1035					-0.0006843671749265923
ALYEDILEDAK	11	Unmodified	_ALYEDILEDAK_					0	0	0		ENST00000554059.1_1_14:69866086-69895394:+|nuORF	ENST00000554059.1_1_14:69866086-69895394:+|nuORF	ENST00000554059.1_1_14:69866086-69895394:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.571044921875	3	427.218726	1278.63435	-0.30357	-0.00012969	0.056814	2.4272E-05	-0.24676	-0.00010542	427.2195932673177	15.565	0.29274	15.565	15.413	15.706	0					11	9	2	0	0	0	0.33303	1	1073	1073		2.4348	1.1051	1	17100			931	11829	567	567	1036	1036					0.006176215413006503
ALYGIRKFTFK	11	Unmodified	_ALYGIRKFTFK_					0	0	0			REV__nc|ENSG00000065000|O14617-3|AP3D1	REV__nc|ENSG00000065000|O14617-3|AP3D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.5990905761719	3	448.599324	1342.77614	0.1645	7.3796E-05	-0.29179	-0.0001309	-0.12729	-5.7101E-05	448.59922152339124	44.008	0.56275	44.008	43.767	44.33	0					54	20	4	0	0	0	0.40129	1	9745	9745		11.065	1.049	1	1066300	+		932	13653	568	568	1037	1037					0.11846504144909886
ALYIWYLS	8	Unmodified	_ALYIWYLS_					0	0	0			REV__ENST00000549850.1_1_14:31917543-31917612:-|nuORF	REV__ENST00000549850.1_1_14:31917543-31917612:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2534790039062	2	514.776211	1027.53787	0.43929	0.00022613	-3.3035	-0.0017006	-2.8642	-0.0014744	515.2772762163918	33.387	0.13348	33.453	33.405	33.538	0.06636					6	4	2	0	0	0	0.34185	1	6490	6490		10.183	0.10947	1	81867	+		933	22200	569	569	1038	1038					0.025201435626513558
ALYQNTNI	8	Unmodified	_ALYQNTNI_					0	0	0		nc|ENSG00000069431|O60706|ABCC9;ENSG00000069431|ENST00000261200|ABCC9	nc|ENSG00000069431|O60706|ABCC9	nc|ENSG00000069431|O60706|ABCC9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2890319824219	2	468.742899	935.471246	-0.0062319	-2.9211E-06	3.0987	0.0014525	3.0925	0.0014496	468.74788202027116	73.679	0.21786	73.732	73.578	73.796	0.052368					10	7	2	0	0	0	0.3366	1	18855	18855		7.9102	0	1	95640			934	906	570	570	1039	1039					0.0009290800074950312
ALYSGVHKK	9	Unmodified	_ALYSGVHKK_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7900695800781	2	501.790184	1001.56581	0.036923	1.8528E-05	-0.17625	-8.8441E-05	-0.13933	-6.9914E-05	501.79005977569403	14.297	0.67522	14.297	14.113	14.789	0					55	23	4	0	0	0	0.0054984	1	693	693		86.332	40.632	1	635470			935	2405	571	571	1040	1040					0.06509466542752307
ALYSGVHKK	9	Unmodified	_ALYSGVHKK_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7898864746094	2	501.790184	1001.56581	0.030996	1.5553E-05	-0.32747	-0.00016432	-0.29647	-0.00014877	501.7899569158057	14.399	0.68983	14.295	14.105	14.795	-0.10466					54	23	4	0	0	0	0.13643	1	744	744		45.7	16.618	1	503270			936	2405	571	571	1041	1041					0.06509466542752307
ALYSGVHKK	9	Unmodified	_ALYSGVHKK_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7900695800781	2	501.790184	1001.56581	0.0026207	1.315E-06	-0.20719	-0.00010397	-0.20457	-0.00010265	501.79007287226716	14.411	0.7457	14.345	14.124	14.869	-0.066068					56	26	4	0	0	0	0.011693	1	724	724		76.825	38.649	1	464480			937	2405	571	571	1042	1042					0.06509466542752307
AMEMSLVLLF	10	Unmodified	_AMEMSLVLLF_					0	0	0		ENST00000399247.6_1_6:29715107-29716779:-|nuORF	ENST00000399247.6_1_6:29715107-29716779:-|nuORF	ENST00000399247.6_1_6:29715107-29716779:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.7901611328125	2	577.303421	1152.59229	0.26538	0.00015321	0.75199	0.00043413	1.0174	0.00058733	577.8050131050064	58.846	0.34256	58.846	58.712	59.055	0					14	11	2	0	0	0	0.31165	1	14339	14339		15.847	1.0089	1	131390			938	10175	572	572	1043	1043					0.022096513275528196
AMHNRLRRAL	10	Unmodified	_AMHNRLRRAL_					0	0	0			REV__ENSG00000164919|ENST00000520468|COX6C	REV__ENSG00000164919|ENST00000520468|COX6C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2385559082031	3	413.240136	1236.69858	-0.019151	-7.914E-06	-2.6513	-0.0010956	-2.6704	-0.0011035	413.573568111773	30.525	0.49933	30.552	30.394	30.893	0.027157					37	17	3	0	0	0	0.3213	1	5605	5605		1.9064	0.1641	1	131080	+		939	17188	573	573	1044	1044					0.08969587727779071
AMIEVNINK	9	Oxidation (M)	_AM(Oxidation (M))IEVNINK_		AM(1)IEVNINK		AM(86)IEVNINK	0	0	1		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2776489257812	2	524.278792	1046.54303	-0.66595	-0.00034914	0.15367	8.0565E-05	-0.51228	-0.00026858	524.2788026644038	35.11	0.98645	35.11	34.618	35.604	0					101	35	4	0	0	0	0.0054984	1	6901	6901		86.332	53.546	1	1593900			940	2476	574	574	1045	1045		301			0.021620793629836044
AMIEVNINK	9	Oxidation (M)	_AM(Oxidation (M))IEVNINK_		AM(1)IEVNINK		AM(120)IEVNINK	0	0	1		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.278076171875	2	524.278792	1046.54303	-0.79423	-0.0004164	0.51411	0.00026954	-0.28012	-0.00014686	524.2788477189091	34.929	1.0122	35.004	34.604	35.617	0.075306					97	36	3	0	0	0	0.0010968	2	6926	6875;6926		121.53	81.584	1	1768400			941	2476	574	574	1046;1047	1047		301			0.021620793629836044
AMIEVNINK	9	Oxidation (M)	_AM(Oxidation (M))IEVNINK_		AM(1)IEVNINK		AM(130)IEVNINK	0	0	1		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.278076171875	2	524.278792	1046.54303	-0.45966	-0.00024099	0.10083	5.2861E-05	-0.35884	-0.00018813	524.2787598672646	34.975	0.91418	35.052	34.614	35.528	0.077377					98	32	4	0	0	0	0.00019464	2	6906	6862;6906		133.05	83.119	1	1553800			942	2476	574	574	1048;1049	1049		301			0.021620793629836044
AMKKKQKEEKK	11	Unmodified	_AMKKKQKEEKK_					0	0	0			REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.2744140625	3	459.274511	1374.8017	-0.00012434	-5.7105E-08	-0.27457	-0.0001261	-0.2747	-0.00012616	459.27436436926297	24.337	0.96051	24.337	23.998	24.958	0					78	32	3	0	0	0	0.45629	1	3711	3711		3.8459	3.8459	1	644350	+		943	17202	575	575	1050	1050					0.12929610605033304
AMKKKQKEEKK	11	Unmodified	_AMKKKQKEEKK_					0	0	0			REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.60882568359375	3	459.274511	1374.8017	0.10756	4.9398E-05	-0.3539	-0.00016254	-0.24634	-0.00011314	459.27433722175687	24.511	0.83754	24.439	24.118	24.956	-0.072559					71	28	3	0	0	0	0.45629	1	3758	3758		3.8459	3.8459	1	756450	+		944	17202	575	575	1051	1051					0.12929610605033304
AMKKKQKEEKK	11	Unmodified	_AMKKKQKEEKK_					0	0	0			REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2744140625	3	459.274511	1374.8017	0.0049287	2.2636E-06	-0.13641	-6.2648E-05	-0.13148	-6.0385E-05	459.2744108851089	24.532	0.93183	24.493	24.082	25.014	-0.038488					74	31	3	0	0	0	0.43809	1	3746	3746		6.2344	0	1	749540	+		945	17202	575	575	1052	1052					0.12929610605033304
AMKKKQKEEKK	11	Unmodified	_AMKKKQKEEKK_					0	0	0			REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	459.274511	1374.8017	0.0049287	2.2636E-06	-0.13641	-6.2648E-05	-0.13148	-6.0385E-05	459.2744108851089	24.532	0.93183	24.493	24.082	25.014	-0.038488	0.07021	0.00015878	NaN	6.2344	74	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	749540	+		946	17202	575	575							0.12929610605033304
AMKLLHQVS	9	Unmodified	_AMKLLHQVS_					0	0	0		ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-5|MEI1;nc|ENSG00000167077|Q5TIA1-2|MEI1	ENSG00000167077|ENST00000401548|MEI1	ENSG00000167077|ENST00000401548|MEI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2901611328125	2	513.791869	1025.56919	0.40581	0.0002085	-0.23351	-0.00011998	0.1723	8.8527E-05	513.7917499422081	21.485	0.75453	21.384	20.989	21.744	-0.10034					39	26	2	0	0	0	0.24688	1	2817	2817		14.838	2.5976	1	329800			947	6144	576	576	1053	1053					0.05742393325112971
AMLDTVVFK	9	Oxidation (M)	_AM(Oxidation (M))LDTVVFK_		AM(1)LDTVVFK		AM(110)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2784423828125	2	520.27826	1038.54197	0.70113	0.00036478	-0.12662	-6.5879E-05	0.57451	0.0002989	520.2782200215858	47.411	1.4849	47.411	46.932	48.417	0					151	52	5	0	0	0	0.0016712	4	10719	10719;10770;10822;10876		114.2	85.12	1	13271000			948	2621	577	577	1054;1055;1056;1057	1054		326			0.024238649940798496
AMLDTVVFK	9	Oxidation (M)	_AM(Oxidation (M))LDTVVFK_		AM(1)LDTVVFK		AM(140)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2784423828125	2	520.27826	1038.54197	0.3983	0.00020723	0.13132	6.8323E-05	0.52962	0.00027555	520.2783883143826	47.359	1.1512	47.412	46.929	48.08	0.052574					158	42	6	0	0	0	0.00012108	3	10775	10725;10775;10821		137.42	101.3	1	14716000			949	2621	577	577	1058;1059;1060	1059		326			0.024238649940798496
AMLDTVVFK	9	Oxidation (M)	_AM(Oxidation (M))LDTVVFK_		AM(1)LDTVVFK		AM(140)LDTVVFK	0	0	1		ENSG00000115233|ENST00000409682|PSMD14;ENST00000492908.1_1_2:162265323-162267908:+|nuORF;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.278564453125	2	520.27826	1038.54197	0.92782	0.00048272	-0.36721	-0.00019105	0.56061	0.00029167	520.2781147085898	47.384	1.6904	47.439	46.908	48.599	0.054375					168	62	6	0	0	0	0.00012108	4	10744	10695;10744;10792;10843		137.42	97.466	1	15106000			950	2621	577	577	1061;1062;1063;1064	1062		326			0.024238649940798496
AMLPYDQYLHR	11	Oxidation (M)	_AM(Oxidation (M))LPYDQYLHR_		AM(1)LPYDQYLHR		AM(43)LPYDQYLHR	0	0	1		CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;ENST00000586392.1_1_19:34884680-34890938:+|nuORF	CON__Q3ZBD7	CON__Q3ZBD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.89923095703125	3	474.899333	1421.67617	0.40944	0.00019444	-0.30747	-0.00014602	0.10197	4.8425E-05	474.89916310146026	47.38	0.94506	47.38	46.904	47.849	0					90	33	4	0	0	0	0.0859	1	10801	10801		42.862	31.231	1	725250		+	951	236	578	578	1065	1065		13			-0.017801012512109082
AMLPYDQYLHR	11	Oxidation (M)	_AM(Oxidation (M))LPYDQYLHR_		AM(1)LPYDQYLHR		AM(46)LPYDQYLHR	0	0	1		CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;ENST00000586392.1_1_19:34884680-34890938:+|nuORF	CON__Q3ZBD7	CON__Q3ZBD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.89935302734375	3	474.899333	1421.67617	0.7704	0.00036586	-0.78775	-0.0003741	-0.017356	-8.2423E-06	474.89899871152994	47.382	0.80983	47.436	46.972	47.782	0.054371					75	29	3	0	0	0	0.073872	1	10790	10790		46.34	37.588	1	826540		+	952	236	578	578	1066	1066		13			-0.017801012512109082
AMMAIAIMK	9	3 Oxidation (M)	_AM(Oxidation (M))M(Oxidation (M))AIAIM(Oxidation (M))K_		AM(1)M(1)AIAIM(1)K		AM(71)M(71)AIAIM(71)K	0	0	3		ENST00000472442.2_1_19:1922970-1924280:+|nuORF;nc|ENSG00000227500|Q969E2-2|SCAMP4;ENSG00000227500|ENST00000316097|SCAMP4	ENST00000472442.2_1_19:1922970-1924280:+|nuORF	ENST00000472442.2_1_19:1922970-1924280:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2525634765625	2	514.252874	1026.49119	0.085533	4.3985E-05	-1.8005	-0.00092592	-1.715	-0.00088193	514.2527621591853	27.65	0.78161	27.65	27.172	27.954	0					59	26	4	0	0	0	0.015402	3	4771	4670;4718;4771		71.134	54.191	1	313080			953	8457	579	579	1067;1068;1069	1069		905;906;907			-0.020991236468034913
AMMAIAIMK	9	3 Oxidation (M)	_AM(Oxidation (M))M(Oxidation (M))AIAIM(Oxidation (M))K_		AM(1)M(1)AIAIM(1)K		AM(74)M(74)AIAIM(74)K	0	0	3		ENST00000472442.2_1_19:1922970-1924280:+|nuORF;nc|ENSG00000227500|Q969E2-2|SCAMP4;ENSG00000227500|ENST00000316097|SCAMP4	ENST00000472442.2_1_19:1922970-1924280:+|nuORF	ENST00000472442.2_1_19:1922970-1924280:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2526245117188	2	514.252874	1026.49119	-0.031561	-1.623E-05	-0.13625	-7.0067E-05	-0.16781	-8.6298E-05	514.2528294638047	27.579	1.0179	27.558	27.158	28.176	-0.02141					58	35	2	0	0	0	0.013258	2	4735	4667;4735		74.423	62.782	1	322740			954	8457	579	579	1070;1071	1071		905;906;907			-0.020991236468034913
AMMAIAIMK	9	3 Oxidation (M)	_AM(Oxidation (M))M(Oxidation (M))AIAIM(Oxidation (M))K_		AM(1)M(1)AIAIM(1)K		AM(74)M(74)AIAIM(74)K	0	0	3		ENST00000472442.2_1_19:1922970-1924280:+|nuORF;nc|ENSG00000227500|Q969E2-2|SCAMP4;ENSG00000227500|ENST00000316097|SCAMP4	ENST00000472442.2_1_19:1922970-1924280:+|nuORF	ENST00000472442.2_1_19:1922970-1924280:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2530517578125	2	514.252874	1026.49119	-0.091438	-4.7022E-05	-0.024943	-1.2827E-05	-0.11638	-5.9849E-05	514.2528254280047	27.402	0.90698	27.39	27.132	28.039	-0.01156					57	31	2	0	0	0	0.013258	1	4712	4712		74.423	58.576	1	370310			955	8457	579	579	1072	1072		905;906;907			-0.020991236468034913
AMPFTLRAF	9	Unmodified	_AMPFTLRAF_					0	0	0		nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4;ENST00000414718.1_1_20:12361512-12361782:+|nuORF	nc|ENSG00000170515|Q9UQ80-2|PA2G4	nc|ENSG00000170515|Q9UQ80-2|PA2G4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7799072265625	2	527.281137	1052.54772	0.4439	0.00023406	0.060494	3.1897E-05	0.50439	0.00026596	527.2811671540237	47.32	0.2423	47.373	47.219	47.461	0.05257					12	8	2	0	0	0	0.25323	1	10738	10738		10.074	1.4806	1	329450			956	6459	580	580	1073	1073					0.023550082963765817
AMPFTLRAF	9	Unmodified	_AMPFTLRAF_					0	0	0		nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4;ENST00000414718.1_1_20:12361512-12361782:+|nuORF	nc|ENSG00000170515|Q9UQ80-2|PA2G4	nc|ENSG00000170515|Q9UQ80-2|PA2G4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	527.281137	1052.54772	0.78386	0.00041332	-0.59985	-0.00031629	0.18402	9.7028E-05	527.2809484912982	47.384	0.25292	47.384	47.187	47.44	0	0.0021605	-0.00022339	NaN	10.074	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231650			957	6459	580	580							0.023550082963765817
AMPFTLRAF	9	Unmodified	_AMPFTLRAF_					0	0	0		nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4;ENST00000414718.1_1_20:12361512-12361782:+|nuORF	nc|ENSG00000170515|Q9UQ80-2|PA2G4	nc|ENSG00000170515|Q9UQ80-2|PA2G4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	527.281137	1052.54772	1.0889	0.00057417	-1.1021	-0.00058109	-0.013136	-6.9266E-06	527.2806336855461	47.334	0.24085	47.388	47.225	47.466	0.054375	0.0064315	-0.000753	NaN	10.074	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319330			958	6459	580	580							0.023550082963765817
AMQKIYQTF	9	Oxidation (M)	_AM(Oxidation (M))QKIYQTF_		AM(1)QKIYQTF		AM(110)QKIYQTF	0	0	1		nc|ENSG00000139496|Q9BVL2-2|NUP58;ENST00000466694.5_1_13:25875911-25912925:+|nuORF;nc|ENSG00000139496|Q9BVL2-3|NUP58;ENSG00000139496|ENST00000381736|NUP58	nc|ENSG00000139496|Q9BVL2-2|NUP58	nc|ENSG00000139496|Q9BVL2-2|NUP58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.287353515625	2	573.286617	1144.55868	-0.1328	-7.6135E-05	1.102	0.00063175	0.96917	0.00055561	573.2873380320457	38.728	0.5243	38.728	38.488	39.012	0					43	18	3	0	0	0	0.001957	1	8137	8137		110.55	60.62	1	649970			959	4238	581	581	1074	1074		541			-0.007816341199941235
AMQKIYQTF	9	Oxidation (M)	_AM(Oxidation (M))QKIYQTF_		AM(1)QKIYQTF		AM(120)QKIYQTF	0	0	1		nc|ENSG00000139496|Q9BVL2-2|NUP58;ENST00000466694.5_1_13:25875911-25912925:+|nuORF;nc|ENSG00000139496|Q9BVL2-3|NUP58;ENSG00000139496|ENST00000381736|NUP58	nc|ENSG00000139496|Q9BVL2-2|NUP58	nc|ENSG00000139496|Q9BVL2-2|NUP58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.2874145507812	2	573.286617	1144.55868	0.35772	0.00020507	0.55219	0.00031656	0.90991	0.00052164	573.2871319921005	38.664	0.54272	38.755	38.483	39.026	0.090885					44	19	3	0	0	0	0.0010968	2	8069	8069;8135		121.53	69.266	1	605370			960	4238	581	581	1075;1076	1075		541			-0.007816341199941235
AMQKIYQTF	9	Oxidation (M)	_AM(Oxidation (M))QKIYQTF_		AM(1)QKIYQTF		AM(48)QKIYQTF	0	0	1		nc|ENSG00000139496|Q9BVL2-2|NUP58;ENST00000466694.5_1_13:25875911-25912925:+|nuORF;nc|ENSG00000139496|Q9BVL2-3|NUP58;ENSG00000139496|ENST00000381736|NUP58	nc|ENSG00000139496|Q9BVL2-2|NUP58	nc|ENSG00000139496|Q9BVL2-2|NUP58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.288818359375	2	573.286617	1144.55868	0.38757	0.00022219	0.66979	0.00038398	1.0574	0.00060617	573.2870172247232	38.665	0.5549	38.763	38.517	39.072	0.097527					46	19	3	0	0	0	0.064268	1	8135	8135		47.594	28.232	1	617350			961	4238	581	581	1077	1077		541			-0.007816341199941235
AMRMFLKN	8	Unmodified	_AMRMFLKN_					0	0	0			REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.77667236328125	2	505.76734	1009.52013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.118	1	22.118	21.618	22.618	0								0	0	0	0.37724	1	3048	3048		2.3027	0	1		+		962	16574	582	582	1078	1078					0.01574781764520594
AMVLPQLL	8	Oxidation (M)	_AM(Oxidation (M))VLPQLL_		AM(1)VLPQLL		AM(57)VLPQLL	0	0	1			REV__ENSG00000267221|ENST00000587304|C17orf113	REV__ENSG00000267221|ENST00000587304|C17orf113	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.77239990234375	2	450.764789	899.515025	0.065029	2.9313E-05	-1.4695	-0.00066242	-1.4045	-0.00063311	450.76369242572065	73.423	0.55563	73.423	73.105	73.661	0					27	19	2	0	0	0	0.12267	3	18781	18781;18792;18807		56.541	20.075	1	174970	+		963	19303	583	583	1079;1080;1081	1079		1006			0.06124801173564265
AMVLPQLL	8	Oxidation (M)	_AM(Oxidation (M))VLPQLL_		AM(1)VLPQLL		AM(47)VLPQLL	0	0	1			REV__ENSG00000267221|ENST00000587304|C17orf113	REV__ENSG00000267221|ENST00000587304|C17orf113	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2748107910156	2	450.764789	899.515025	0.22334	0.00010067	-1.6955	-0.00076429	-1.4722	-0.00066362	450.7637828363564	73.442	0.51347	73.413	73.153	73.667	-0.029305					31	18	2	0	0	0	0.17761	2	18795	18795;18802		46.921	10.455	1	179850	+		964	19303	583	583	1082;1083	1082		1006			0.06124801173564265
AMVLPQLL	8	Oxidation (M)	_AM(Oxidation (M))VLPQLL_					0	0	1			REV__ENSG00000267221|ENST00000587304|C17orf113	REV__ENSG00000267221|ENST00000587304|C17orf113	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	450.764789	899.515025	0.065029	2.9313E-05	-1.4695	-0.00066242	-1.4045	-0.00063311	450.76369242572065	73.423	0.55563	73.423	73.105	73.661	0	0.005388	0.00010466	NaN	56.541	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174970	+		965	19303	583	583				1006			0.06124801173564265
AMVLPQLL	8	Oxidation (M)	_AM(Oxidation (M))VLPQLL_					0	0	1			REV__ENSG00000267221|ENST00000587304|C17orf113	REV__ENSG00000267221|ENST00000587304|C17orf113	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	450.764789	899.515025	0.22334	0.00010067	-1.6955	-0.00076429	-1.4722	-0.00066362	450.7637828363564	73.442	0.51347	73.413	73.153	73.667	-0.029305	-0.005388	-9.9081E-05	NaN	56.541	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179850	+		966	19303	583	583				1006			0.06124801173564265
AMVSEFLK	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))AM(Oxidation (M))VSEFLK_		AM(1)VSEFLK		AM(140)VSEFLK	1	0	1		ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7493896484375	2	491.749336	981.484119	0.56607	0.00027836	-0.030551	-1.5024E-05	0.53552	0.00026334	491.7491515328581	64.495	1.3776	64.495	63.915	65.293	0					101	50	4	0	0	0	0.00098232	3	16029	15981;16029;16080		144.35	62.737	1	4253600			967	3839	584	584	1084;1085;1086	1085		479			-0.007363969313473717
AMVSEFLK	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))AM(Oxidation (M))VSEFLK_		AM(1)VSEFLK		AM(140)VSEFLK	1	0	1		ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.74945068359375	2	491.749336	981.484119	0.52222	0.0002568	0.035593	1.7503E-05	0.55781	0.0002743	491.74919447189967	64.388	1.0502	64.481	64.04	65.09	0.09288					107	38	6	0	0	0	0.00098232	3	15997	15949;15997;16037		144.35	69.91	1	4348000			968	3839	584	584	1087;1088;1089	1088		479			-0.007363969313473717
AMVSEFLK	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))AM(Oxidation (M))VSEFLK_		AM(1)VSEFLK		AM(86)VSEFLK	1	0	1		ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.7493896484375	2	491.749336	981.484119	0.56757	0.0002791	0.26698	0.00013129	0.83454	0.00041039	491.7492854698232	64.111	0.51998	64.102	63.769	64.289	-0.0095291					51	18	3	0	0	0	0.034373	1	15962	15962		85.642	43.547	1	4546700			969	3839	584	584	1090	1090		479			-0.007363969313473717
AMVSEFLK	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))AM(Oxidation (M))VSEFLK_		AM(1)VSEFLK		AM(130)VSEFLK	1	0	1		ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.7493896484375	2	491.749336	981.484119	0.51245	0.000252	0.069256	3.4056E-05	0.58171	0.00028605	491.74919717264754	64.5	0.88776	64.491	64.289	65.177	-0.0095291					72	32	3	0	0	0	0.0030528	2	16008	16008;16059		131.27	63.187	1	3843100			970	3839	584	584	1091;1092	1091		479			-0.007363969313473717
AMVSEFLK	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))AM(Oxidation (M))VSEFLK_					1	0	1		ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	491.749336	981.484119	0.59267	0.00029144	0.27744	0.00013643	0.87011	0.00042788	491.7493069232517	64.095	0.49126	64.095	63.797	64.288	0	9.8405E-05	-1.6563E-05	NaN	85.642	47	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4708200			971	3839	584	584				479			-0.007363969313473717
AMVSEFLK	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))AM(Oxidation (M))VSEFLK_					1	0	1		ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	491.749336	981.484119	0.50168	0.0002467	0.33968	0.00016704	0.84136	0.00041374	491.74934151153565	63.994	0.48967	64.087	63.794	64.284	0.09288	-0.0073342	4.4652E-05	NaN	85.642	59	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4501000			972	3839	584	584				479			-0.007363969313473717
AMYLYRSWSGK	11	Unmodified	_AMYLYRSWSGK_					0	0	0		ENSG00000134193|ENST00000256585|REG4	ENSG00000134193|ENST00000256585|REG4	ENSG00000134193|ENST00000256585|REG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2062683105469	3	454.56054	1360.65979	0.27679	0.00012582	2.8589	0.0012995	3.1357	0.0014253	455.2293319993346	20.172	0.53999	20.056	19.642	20.182	-0.11592					40	18	3	0	0	0	0.33296	1	2445	2445		2.6312	1.4164	1	69436			973	3761	585	585	1093	1093					-0.006111824172876368
AMYLYRSWSGK	11	Unmodified	_AMYLYRSWSGK_					0	0	0		ENSG00000134193|ENST00000256585|REG4	ENSG00000134193|ENST00000256585|REG4	ENSG00000134193|ENST00000256585|REG4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	454.56054	1360.65979	0.33249	0.00015114	2.9378	0.0013354	3.2702	0.0014865	455.2294822406303	20.017	0.57802	19.962	19.571	20.149	-0.055693	-0.03535	3.8948E-05	NaN	2.6312	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60957			974	3761	585	585							-0.006111824172876368
AMYPDYFAK	9	Oxidation (M)	_AM(Oxidation (M))YPDYFAK_		AM(1)YPDYFAK		AM(64)YPDYFAK	0	0	1		ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.251220703125	2	561.252243	1120.48993	0.41948	0.00023543	-1.1629	-0.00065269	-0.74343	-0.00041725	561.2514260689325	44.069	1.0364	44.146	43.684	44.72	0.077518					72	38	2	0	0	0	0.020233	2	9754	9704;9754		63.961	33.324	1	1446700			975	4782	586	586	1094;1095	1095		595			-0.06549298419713523
AMYPDYFAK	9	Oxidation (M)	_AM(Oxidation (M))YPDYFAK_		AM(1)YPDYFAK		AM(48)YPDYFAK	0	0	1		ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	ENSG00000147684|ENST00000276689|NDUFB9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2516479492188	2	561.252243	1120.48993	0.24907	0.00013979	-1.1385	-0.00063899	-0.88945	-0.0004992	561.2515005065271	43.988	1.0742	44.072	43.657	44.732	0.083992					66	39	2	0	0	0	0.064268	1	9684	9684		47.594	27.141	1	2076300			976	4782	586	586	1096	1096		595			-0.06549298419713523
AMYTYFQAK	9	Oxidation (M)	_AM(Oxidation (M))YTYFQAK_		AM(1)YTYFQAK		AM(110)YTYFQAK	0	0	1		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.765869140625	2	569.765517	1137.51648	0.42899	0.00024443	-0.14178	-8.0782E-05	0.28721	0.00016364	569.7654260509283	37.882	0.86724	37.882	37.452	38.32	0					76	30	3	0	0	0	0.0019475	3	7836	7787;7836;7894		110.67	94.526	1	883310			977	2719	587	587	1097;1098;1099	1098		342			-0.04677609528380344
AMYTYFQAK	9	Oxidation (M)	_AM(Oxidation (M))YTYFQAK_		AM(1)YTYFQAK		AM(120)YTYFQAK	0	0	1		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.7658081054688	2	569.765517	1137.51648	0.42698	0.00024328	-0.22332	-0.00012724	0.20366	0.00011604	569.7653826573585	37.807	0.9322	37.898	37.388	38.32	0.090885					88	33	3	0	0	0	0.0010463	3	7740	7740;7790;7841		122.18	105.07	1	803280			978	2719	587	587	1100;1101;1102	1100		342			-0.04677609528380344
AMYTYFQAK	9	Oxidation (M)	_AM(Oxidation (M))YTYFQAK_		AM(1)YTYFQAK		AM(110)YTYFQAK	0	0	1		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.765625	2	569.765517	1137.51648	0.2398	0.00013663	0.045497	2.5922E-05	0.28529	0.00016255	569.7655403738206	37.743	0.89278	37.84	37.428	38.32	0.097527					79	32	3	0	0	0	0.0019475	2	7723	7723;7823		110.67	94.526	1	1000100			979	2719	587	587	1103;1104	1103		342			-0.04677609528380344
ANAFEEQL	8	Unmodified	_ANAFEEQL_					0	0	0		nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1;ENST00000477481.1_1_2:111419560-111423971:-|nuORF;ENST00000468927.1_1_2:111423713-111425408:-|nuORF;ENST00000465029.5_1_2:111419157-111435602:-|nuORF	nc|ENSG00000169679|O43683-2|BUB1	nc|ENSG00000169679|O43683-2|BUB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.218994140625	2	461.219257	920.423961	0.21607	9.9656E-05	0.043284	1.9963E-05	0.25935	0.00011962	461.2191220374752	42.262	0.75756	42.353	42.095	42.853	0.091362					56	26	3	0	0	0	0.32038	1	9229	9229		28.487	0	1	1297400			980	6374	588	588	1105	1105					-0.03943371270224816
ANEAAALNLEH	11	Unmodified	_ANEAAALNLEH_					0	0	0		nc|ENSG00000178965|Q5RHP9-2|ERICH3;ENST00000433746.2_1_1:75036803-75045091:-|nuORF;ENSG00000178965|ENST00000326665|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.7852783203125	2	576.785827	1151.5571	0.18738	0.00010808	-0.44955	-0.00025929	-0.26217	-0.00015121	576.7854050312028	23.465	0.49089	23.378	23.108	23.599	-0.08761					38	17	3	0	0	0	0.45108	1	3493	3493		4.5289	0.19963	1	170260			981	7090	589	589	1106	1106					-0.012615518843858808
ANEFRVWV	8	Unmodified	_ANEFRVWV_					0	0	0			REV__ENST00000593004.5_1_17:58756818-58797523:+|nuORF	REV__ENST00000593004.5_1_17:58756818-58797523:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.7663269042969	2	510.766709	1019.51886	-0.084577	-4.3199E-05	-0.27413	-0.00014002	-0.35871	-0.00018322	510.7665380264566	13.386	0.58964	13.287	13.129	13.718	-0.099291					44	20	4	0	0	0	0.44734	1	399	399		6.7232	0.51738	1	468070	+		982	16071	590	590	1107	1107					0.00988606991609231
ANENQLPK	8	Unmodified	_ANENQLPK_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.78704833984375	2	457.240524	912.466495	-0.043969	-2.0105E-05	0.11896	5.4391E-05	0.074986	3.4287E-05	457.2405903801214	19.554	0.60943	19.554	19.267	19.877	0					34	21	3	0	0	0	0.34294	1	2280	2280		7.2892	1.0834	1	30889	+		983	14911	591	591	1108	1108					0.006760238579886391
ANFRRLKA	8	Unmodified	_ANFRRLKA_					0	0	0			REV__ENSG00000123454|ENST00000393056|DBH	REV__ENSG00000123454|ENST00000393056|DBH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.76910400390625	2	488.295968	974.577383	0.016045	7.8346E-06	-0.18296	-8.9337E-05	-0.16691	-8.1502E-05	488.2957956849749	25.46	0.51769	25.404	25.186	25.704	-0.055929					37	17	3	0	0	0	0.34218	1	4059	4059		9.3474	1.4373	1	179820	+		984	15192	592	592	1109	1109					0.08907708356753119
ANGWRMWRSR	10	Unmodified	_ANGWRMWRSR_					0	0	0		ENST00000550945.5_2_12:25205206-25205284:+|nuORF	ENST00000550945.5_2_12:25205206-25205284:+|nuORF	ENST00000550945.5_2_12:25205206-25205284:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.2340393066406	3	440.556124	1318.64654	0.20632	9.0897E-05	1.5681	0.00069082	1.7744	0.00078172	440.55690220621705	17.174	0.35823	17.114	16.971	17.33	-0.060429					20	12	2	0	0	0	0.32082	1	1614	1614		3.3196	0.24738	1	30791			985	11801	593	593	1110	1110					-3.575686014301027E-05
ANHRLVKR	8	Unmodified	_ANHRLVKR_					0	0	0			REV__ENSG00000108094|ENST00000374749|CUL2	REV__ENSG00000108094|ENST00000374749|CUL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.26409912109375	2	497.306867	992.599181	0.096901	4.819E-05	2.1199	0.0010542	2.2168	0.0011024	497.30788021112363	14.946	0.39859	14.946	14.729	15.127	0					21	13	2	0	0	0	0.34247	1	882	882		8.5933	0	1	54991	+		986	14582	594	594	1111	1111					0.1025851310531607
ANKDKLTT	8	Unmodified	_ANKDKLTT_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.75006103515625	2	445.750724	889.486896	0.5361	0.00023897	-1.2556	-0.00055968	-0.7195	-0.00032072	445.74981365922997	77.384	0.94361	77.384	77.011	77.955	0					80	34	4	0	0	0	0.34353	1	19995	19995		4.756	0	1	941470	+		987	16233	595	595	1112	1112					0.037731945177824855
ANKDKLTT	8	Unmodified	_ANKDKLTT_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	445.750724	889.486896	0.42658	0.00019015	-1.5887	-0.00070818	-1.1622	-0.00051803	445.74987267866635	77.353	0.94272	77.409	76.982	77.924	0.055412	-0.00023429	1.5192E-05	NaN	4.756	66	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	759840	+		988	16233	595	595							0.037731945177824855
ANKDKLTT	8	Unmodified	_ANKDKLTT_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	445.750724	889.486896	0.68199	0.000304	-1.7572	-0.00078328	-1.0752	-0.00047929	445.7497504690499	77.466	0.90628	77.434	76.991	77.897	-0.031334	0.025599	-0.00013501	NaN	4.756	74	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	775730	+		989	16233	595	595							0.037731945177824855
ANKFYVHNDIF	11	Unmodified	_ANKFYVHNDIF_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.74853515625	3	456.562938	1366.66699	0.087451	3.9927E-05	0.68719	0.00031375	0.77464	0.00035367	456.8976712237685	17.039	0.29039	17.039	16.952	17.242	0					13	9	2	0	0	0	0.33296	1	1563	1563		1.2148	0.4383	1	21705			990	4679	596	596	1113	1113					-0.0016812654521345394
ANKVLKSKL	9	Unmodified	_ANKVLKSKL_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7929382324219	2	500.829309	999.644065	-0.0034922	-1.749E-06	-0.63247	-0.00031676	-0.63596	-0.00031851	500.8286402529957	13.452	0.14014	13.353	13.249	13.389	-0.099291					7	4	2	0	0	0	0.25988	1	433	433		3.9444	0.3479	1	25888	+		991	18715	597	597	1114	1114					0.1442289912798742
ANKVLKSKL	9	Unmodified	_ANKVLKSKL_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7930908203125	2	500.829309	999.644065	-0.048032	-2.4056E-05	-0.47838	-0.00023959	-0.52641	-0.00026364	500.82896330289014	13.46	0.14031	13.393	13.302	13.443	-0.067496					7	4	2	0	0	0	0.25988	1	436	436		3.9444	0.3479	1	25483	+		992	18715	597	597	1115	1115					0.1442289912798742
ANLEVPHE	8	Unmodified	_ANLEVPHE_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.7280578613281	2	454.727249	907.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.179	1	83.158	82.658	83.658	-0.020584								0	0	0	0.30279	1	21734	21734		28.487	1.6032	1				993	4533	598	598	1116	1116					-0.01747665033337853
ANLHFLRR	8	Unmodified	_ANLHFLRR_					0	0	0			REV__nc|ENSG00000099715|Q9BZA8-3|PCDH11Y	REV__nc|ENSG00000099715|Q9BZA8-3|PCDH11Y	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2610473632812	2	513.801417	1025.58828	-0.48037	-0.00024682	-1.3341	-0.00068546	-1.8145	-0.00093228	513.8014672254859	35.148	0.5491	35.148	34.943	35.492	0					27	19	2	0	0	0	0.34092	1	6989	6989		13.508	1.8676	1	57776	+		994	14135	599	599	1117	1117					0.0765111073103526
ANLKKPILL	9	Unmodified	_ANLKKPILL_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.26361083984375	2	505.342052	1008.66955	0.23456	0.00011853	-0.67568	-0.00034145	-0.44112	-0.00022291	505.34166442096557	76.409	0.66422	76.409	76.193	76.858	0					35	23	2	0	0	0	0.2451	1	19694	19694		6.7232	0	1	250100			995	5729	600	600	1118	1118					0.16556373650416845
ANLLQLNIYQ	10	Unmodified	_ANLLQLNIYQ_					0	0	0			REV__ENSG00000196305|ENST00000443024|IARS1	REV__ENSG00000196305|ENST00000443024|IARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.3072509765625	2	595.332413	1188.65027	0.49293	0.00029346	2.2359	0.0013311	2.7289	0.0016246	595.3331218568396	88.827	0.70391	88.827	88.541	89.245	-0.00080872					38	27	2	0	0	0	0.31143	1	23462	23462		17.113	2.7075	1	93221	+		996	18641	601	601	1119	1119					0.06349372568843137
ANPQMQQLIQ	10	Unmodified	_ANPQMQQLIQ_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;ENSG00000188021|ENST00000338222|UBQLN2;ENST00000533705.5_1_9:86284090-86294929:-|nuORF	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8139038085938	2	585.800423	1169.58629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.784	1	94.781	94.281	95.281	-0.0020142								0	0	0	0.35216	1	25297	25297		13.906	1.6654	1				997	3838	602	602	1120	1120					0.008282691402655473
ANQVVRPK	8	Unmodified	_ANQVVRPK_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;UBR3|p.G1350Afs*47|1|0.06|ENSG00000144357|chr2:170007007-170007007|G/-|frameshift_variant	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.74853515625	2	456.274701	910.534849	-0.036371	-1.6595E-05	0.22991	0.0001049	0.19354	8.8307E-05	456.2748227219249	17.815	0.384	17.698	17.573	17.957	-0.11739					17	12	2	0	0	0	0.34247	1	1717	1717		8.5933	4.264	1	33537			998	4577	603	603	1121	1121					0.07600313228510913
ANRAVYVVK	9	Unmodified	_ANRAVYVVK_					0	0	0			REV__ENSG00000197165|ENST00000335715|SULT1A2	REV__ENSG00000197165|ENST00000335715|SULT1A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.3036193847656	2	510.303458	1018.59236	-0.083003	-4.2357E-05	-0.073483	-3.7499E-05	-0.15649	-7.9855E-05	510.303789919439	24.968	0.55355	24.936	24.545	25.098	-0.031408					33	18	3	0	0	0	0.25706	1	3908	3908		6.7232	0.51738	1	110660	+		999	18716	604	604	1122	1122					0.08381155434085485
ANSNRKQL	8	Unmodified	_ANSNRKQL_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2921142578125	2	465.759415	929.504277	-0.35702	-0.00016629	0.99486	0.00046337	0.63784	0.00029708	465.75964026189547	12.652	0.17283	12.652	12.526	12.699	0					6	5	2	0	0	0	0.344	1	162	162		2.5775	0	1	10815			1000	2120	605	605	1123	1123					0.03670534843467976
ANTQVVREV	9	Unmodified	_ANTQVVREV_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.27978515625	2	508.28018	1014.54581	0.25631	0.00013028	-0.39806	-0.00020233	-0.14175	-7.2051E-05	508.27985636841	27.046	0.47786	27.046	26.789	27.266	0					31	16	3	0	0	0	0.013031	1	4529	4529		74.772	41.986	1	250600			1001	6848	606	606	1124	1124					0.039116708121468946
ANTQVVREV	9	Unmodified	_ANTQVVREV_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2798156738281	2	508.28018	1014.54581	0.18847	9.5794E-05	-0.84228	-0.00042811	-0.65381	-0.00033232	508.27977611275026	26.996	0.47854	26.974	26.763	27.242	-0.021412					36	16	3	0	0	0	0.0066776	1	4553	4553		84.522	28.345	1	259170			1002	6848	606	606	1125	1125					0.039116708121468946
ANTQVVREV	9	Unmodified	_ANTQVVREV_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.280517578125	2	508.28018	1014.54581	0.3024	0.0001537	-0.61321	-0.00031168	-0.31081	-0.00015798	508.27990250967423	27.026	0.52463	27.014	26.741	27.266	-0.01156					30	18	2	0	0	0	0.0099976	1	4539	4539		79.427	39.477	1	246260			1003	6848	606	606	1126	1126					0.039116708121468946
ANTTYQSYCLF	11	Unmodified	_ANTTYQSYCLF_					0	0	0			REV__ENST00000494673.1_1_6:31243358-31244615:+|nuORF	REV__ENST00000494673.1_1_6:31243358-31244615:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.8631591796875	3	437.528906	1309.56489	0.05707	2.497E-05	-0.3496	-0.00015296	-0.29253	-0.00012799	437.52866870661506	31.784	0.8155	31.825	31.507	32.323	0.040991					56	28	3	0	0	0	0.45202	1	5970	5970		4.4062	1.5629	1	575910	+		1004	21653	607	607	1127	1127					-0.07751160679117675
ANVDLESLQF	10	Unmodified	_ANVDLESLQF_					0	0	0		ENST00000444207.1_1_22:32871735-32871879:+|nuORF	ENST00000444207.1_1_22:32871735-32871879:+|nuORF	ENST00000444207.1_1_22:32871735-32871879:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.754638671875	2	568.285128	1134.5557	0.33387	0.00018973	1.1263	0.00064007	1.4602	0.00082981	568.2856385109188	31.974	0.83513	31.974	31.694	32.529	0					58	29	3	0	0	0	0.31642	1	5993	5993		10.8	3.1906	1	812320			1005	10572	608	608	1128	1128					-0.00619185973164349
ANVEHLKNVLL	11	Unmodified	_ANVEHLKNVLL_					0	0	0		nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000196862|ENST00000408999|RGPD4	nc|ENSG00000187627|P0DJD0|RGPD1	nc|ENSG00000187627|P0DJD0|RGPD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.36767578125	2	625.366787	1248.71902	0.36632	0.00022909	-1.3158	-0.00082286	-0.94949	-0.00059378	625.3657373051568	91.076	0.57374	91.076	90.845	91.419	0					98	41	3	0	0	0	0.33236	1	24118	24118		2.7352	1.5419	1	3268200			1006	7523	609	609	1129	1129					0.10461036868559859
ANVEHLKNVLL	11	Unmodified	_ANVEHLKNVLL_					0	0	0		nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000196862|ENST00000408999|RGPD4	nc|ENSG00000187627|P0DJD0|RGPD1	nc|ENSG00000187627|P0DJD0|RGPD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.8414916992188	2	625.366787	1248.71902	0.33163	0.00020739	-1.2648	-0.00079098	-0.93319	-0.00058359	625.3655947685918	91.048	0.51161	91.049	90.835	91.347	0.00047302					98	35	3	0	0	0	0.33263	1	24228	24228		4.5289	4.5289	1	3495800			1007	7523	609	609	1130	1130					0.10461036868559859
ANWWNHRHF	9	Unmodified	_ANWWNHRHF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.2457275390625	3	423.200446	1266.57951	-0.14858	-6.288E-05	-1.5166	-0.00064184	-1.6652	-0.00070472	423.19827918799626	24.128	0.65476	24.128	23.8	24.454	0					50	22	3	0	0	0	0.26127	1	3651	3651		2.7352	0	1	59599			1008	3816	610	610	1131	1131					-0.0431186290545611
ANWWNHRHF	9	Unmodified	_ANWWNHRHF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.2455749511719	3	423.200446	1266.57951	-0.051076	-2.1615E-05	-3.5385	-0.0014975	-3.5896	-0.0015191	423.19829555143474	24.318	0.45821	24.279	24.02	24.478	-0.038927					23	15	2	0	0	0	0.26127	1	3711	3711		2.7352	0	1	50550			1009	3816	610	610	1132	1132					-0.0431186290545611
APAAARTPAPL	11	Unmodified	_APAAARTPAPL_					0	0	0		ENST00000317025.12_1_8:38239359-38239452:-|nuORF	ENST00000317025.12_1_8:38239359-38239452:-|nuORF	ENST00000317025.12_1_8:38239359-38239452:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2486572265625	2	518.300916	1034.58728	0.16916	8.7678E-05	0.65551	0.00033975	0.82467	0.00042743	518.3013129488387	33.985	0.66473	34.052	33.633	34.298	0.066704					33	23	2	0	0	0	0.31739	1	6520	6520		12.175	2.6308	1	283210			1010	9361	611	611	1133	1133					0.07136851571453917
APAAAVRGV	9	Unmodified	_APAAAVRGV_					0	0	0			REV__ENST00000547808.5_1_12:57033849-57039747:-|nuORF	REV__ENST00000547808.5_1_12:57033849-57039747:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2318115234375	2	406.24287	810.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.307	1	52.358	51.858	52.858	0.050575								0	0	0	0.24077	1	12269	12269		9.3474	2.9933	1		+		1011	14696	612	612	1134	1134					0.05836952791423755
APAAFGLVSF	10	Unmodified	_APAAFGLVSF_					0	0	0		nc|ENSG00000029364|Q9NUM3-3|SLC39A9;nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9	nc|ENSG00000029364|Q9NUM3-3|SLC39A9	nc|ENSG00000029364|Q9NUM3-3|SLC39A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2649841308594	2	490.26601	978.517468	0.36474	0.00017882	-1.4397	-0.00070582	-1.0749	-0.000527	490.2649127157281	82.02	1.0085	82.02	81.699	82.708	0					72	37	3	0	0	0	0.21644	2	21448	21448;21459		30.637	11.38	1	749430			1012	546	613	613	1135;1136	1135					0.027349729028628644
APAAFGLVSF	10	Unmodified	_APAAFGLVSF_					0	0	0		nc|ENSG00000029364|Q9NUM3-3|SLC39A9;nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9	nc|ENSG00000029364|Q9NUM3-3|SLC39A9	nc|ENSG00000029364|Q9NUM3-3|SLC39A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2636413574219	2	490.26601	978.517468	0.19607	9.6124E-05	-1.3481	-0.00066095	-1.1521	-0.00056483	490.26494326030087	81.871	1.219	81.94	81.6	82.819	0.068993					89	50	3	0	0	0	0.27059	1	21438	21438		24.021	8.1734	1	662560			1013	546	613	613	1137	1137					0.027349729028628644
APAAFGLVSF	10	Unmodified	_APAAFGLVSF_					0	0	0		nc|ENSG00000029364|Q9NUM3-3|SLC39A9;nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9	nc|ENSG00000029364|Q9NUM3-3|SLC39A9	nc|ENSG00000029364|Q9NUM3-3|SLC39A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.26666259765625	2	490.26601	978.517468	0.39713	0.0001947	-1.5059	-0.0007383	-1.1088	-0.00054359	490.26486023664086	82.01	1.494	81.985	81.685	83.179	-0.02404					88	58	3	0	0	0	0.071037	1	21344	21344		74.423	38.379	1	741010			1014	546	613	613	1138	1138					0.027349729028628644
APAALRGRLL	10	Unmodified	_APAALRGRLL_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.332763671875	2	519.33255	1036.65055	0.60714	0.00031531	-0.36844	-0.00019134	0.2387	0.00012396	519.332300998745	36.802	0.83488	36.802	36.479	37.314	0					73	29	3	0	0	0	0.09872	1	7479	7479		48.346	6.5062	1	1270800			1015	8434	614	614	1139	1139					0.13368837079360674
APAALRGRLL	10	Unmodified	_APAALRGRLL_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3327026367188	2	519.33255	1036.65055	0.45952	0.00023864	-0.3016	-0.00015663	0.15792	8.2012E-05	519.3323527308627	36.654	0.95536	36.741	36.403	37.358	0.08741					82	34	4	0	0	0	0.10934	1	7429	7429		46.021	30.174	1	1215000			1016	8434	614	614	1140	1140					0.13368837079360674
APAALRGRLL	10	Unmodified	_APAALRGRLL_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	519.33255	1036.65055	0.73639	0.00038243	-0.55833	-0.00028996	0.17806	9.2473E-05	519.3322132005709	36.699	0.65645	36.792	36.486	37.142	0.093018	0.013777	-0.00013852	NaN	48.346	75	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1146500			1017	8434	614	614							0.13368837079360674
APAARALPG	9	Unmodified	_APAARALPG_					0	0	0		ENST00000164227.9_1_19:45252055-45254595:+|nuORF	ENST00000164227.9_1_19:45252055-45254595:+|nuORF	ENST00000164227.9_1_19:45252055-45254595:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.9263000488281	2	412.24287	822.471186	-0.16884	-6.9605E-05	0.79622	0.00032824	0.62738	0.00025863	412.24296011180445	25.55	0.50212	25.55	25.267	25.769	0					28	16	2	0	0	0	0.21905	1	4051	4051		23.148	3.7094	1	200990			1018	8783	615	615	1141	1141					0.05284952791419073
APAARAPQAL	10	Unmodified	_APAARAPQAL_					0	0	0		ENST00000476772.5_1_6:43738443-43746274:+|nuORF;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;ENSG00000112715|ENST00000672860|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA	ENST00000476772.5_1_6:43738443-43746274:+|nuORF	ENST00000476772.5_1_6:43738443-43746274:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2563781738281	2	483.279983	964.545414	0.42844	0.00020706	-1.3301	-0.00064283	-0.90169	-0.00043577	483.2794131802663	29.296	0.26602	29.296	29.089	29.355	0					16	9	2	0	0	0	0.011479	1	5216	5216		99.799	52.05	1	485880			1019	2456	616	616	1142	1142					0.06172295882936396
APAARAPQAL	10	Unmodified	_APAARAPQAL_					0	0	0		ENST00000476772.5_1_6:43738443-43746274:+|nuORF;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;ENSG00000112715|ENST00000672860|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA	ENST00000476772.5_1_6:43738443-43746274:+|nuORF	ENST00000476772.5_1_6:43738443-43746274:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2564392089844	2	483.279983	964.545414	0.25837	0.00012487	-1.7464	-0.00084399	-1.488	-0.00071912	483.2789338883325	29.241	0.30657	29.253	29.025	29.331	0.012266					24	10	3	0	0	0	0.11191	1	5198	5198		69.105	29.155	1	620040			1020	2456	616	616	1143	1143					0.06172295882936396
APAARAPQAL	10	Unmodified	_APAARAPQAL_					0	0	0		ENST00000476772.5_1_6:43738443-43746274:+|nuORF;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;ENSG00000112715|ENST00000672860|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA	ENST00000476772.5_1_6:43738443-43746274:+|nuORF	ENST00000476772.5_1_6:43738443-43746274:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2801208496094	2	483.279983	964.545414	0.12407	5.9962E-05	-1.6481	-0.00079648	-1.524	-0.00073652	483.27917214045755	29.3	0.30147	29.313	29.058	29.359	0.013474					23	10	3	0	0	0	0.001143	1	5203	5203		118.89	56.322	1	657840			1021	2456	616	616	1144	1144					0.06172295882936396
APADPIALSR	10	Unmodified	_APADPIALSR_					0	0	0			REV__nc|ENSG00000165689|Q96C92-2|ENTR1	REV__nc|ENSG00000165689|Q96C92-2|ENTR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8395080566406	2	505.785099	1009.55564	-0.63088	-0.00031909	2.6702	0.0013505	2.0393	0.0010314	505.7865743076472	35.037	1.245	35.037	34.5	35.745	0					63	44	2	0	0	0	0.2541	1	6994	6994		24.882	11.267	1	374490	+		1022	17256	617	617	1145	1145					0.05124858817521272
APADPIALSR	10	Unmodified	_APADPIALSR_					0	0	0			REV__nc|ENSG00000165689|Q96C92-2|ENTR1	REV__nc|ENSG00000165689|Q96C92-2|ENTR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.8394470214844	2	505.785099	1009.55564	-0.64215	-0.00032479	2.8141	0.0014233	2.172	0.0010986	505.7866053748863	34.93	0.83266	35.007	34.755	35.588	0.077381					59	29	3	0	0	0	0.2541	1	6939	6939		30.703	13.761	1	402440	+		1023	17256	617	617	1146	1146					0.05124858817521272
APAEQPLR	8	Unmodified	_APAEQPLR_					0	0	0		ENST00000505608.1_1_3:129350939-129351086:-|nuORF	ENST00000505608.1_1_3:129350939-129351086:-|nuORF	ENST00000505608.1_1_3:129350939-129351086:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2456970214844	2	441.245609	880.476666	0.11663	5.1464E-05	0.067124	2.9618E-05	0.18376	8.1082E-05	441.245495396163	24.611	0.7791	24.611	24.312	25.091	0					43	26	2	0	0	0	0.42077	1	3822	3822		15.847	1.0089	1	98206			1024	11317	618	618	1147	1147					0.031646315832290384
APAFDRHFRTL	11	Unmodified	_APAFDRHFRTL_					0	0	0		nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1;SYNJ1|p.P1238Lfs*21|1|0.29|ENSG00000159082|chr21:32639774-32639774|A/-|frameshift_variant;nc|ENSG00000159082|O43426-5|SYNJ1;SYNJ1|p.F819Lfs*49|1|0.04|ENSG00000159082|chr21:32657837-32657838|-/GGGAATGACAT|frameshift_variant	nc|ENSG00000159082|O43426-4|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	444.2386474609375	3	444.238678	1329.6942	0.35334	0.00015697	-0.3055	-0.00013572	0.047838	2.1251E-05	444.23852935440937	37.985	0.86728	37.985	37.679	38.546	0					85	30	4	0	0	0	0.082958	1	7884	7884		43.713	35.867	1	1473400			1025	5386	619	619	1148	1148					0.04254401785851769
APAFDRHFRTL	11	Unmodified	_APAFDRHFRTL_					0	0	0		nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1;SYNJ1|p.P1238Lfs*21|1|0.29|ENSG00000159082|chr21:32639774-32639774|A/-|frameshift_variant;nc|ENSG00000159082|O43426-5|SYNJ1;SYNJ1|p.F819Lfs*49|1|0.04|ENSG00000159082|chr21:32657837-32657838|-/GGGAATGACAT|frameshift_variant	nc|ENSG00000159082|O43426-4|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	444.2386779785156	3	444.238678	1329.6942	0.22838	0.00010146	-0.0072774	-3.2329E-06	0.2211	9.8223E-05	444.23857911695853	37.863	0.75994	37.954	37.667	38.427	0.090881					84	27	4	0	0	0	0.073872	1	7854	7854		46.34	37.588	1	1388700			1026	5386	619	619	1149	1149					0.04254401785851769
APAFDRHFRTL	11	Unmodified	_APAFDRHFRTL_					0	0	0		nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1;SYNJ1|p.P1238Lfs*21|1|0.29|ENSG00000159082|chr21:32639774-32639774|A/-|frameshift_variant;nc|ENSG00000159082|O43426-5|SYNJ1;SYNJ1|p.F819Lfs*49|1|0.04|ENSG00000159082|chr21:32657837-32657838|-/GGGAATGACAT|frameshift_variant	nc|ENSG00000159082|O43426-4|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	444.2386779785156	3	444.238678	1329.6942	0.25469	0.00011314	-0.075932	-3.3732E-05	0.17876	7.9412E-05	444.23856873939	37.801	0.99371	37.899	37.628	38.622	0.097527					97	35	4	0	0	0	0.061759	1	7829	7829		49.842	49.842	1	1688500			1027	5386	619	619	1150	1150					0.04254401785851769
APAFRLGL	8	Unmodified	_APAFRLGL_					0	0	0			REV__ENST00000368331.5_1_1:155722156-155722264:-|nuORF	REV__ENST00000368331.5_1_1:155722156-155722264:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.7680358886719	2	422.755613	843.496673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.548	1	62.548	62.048	63.048	0								0	0	0	0.34461	1	15438	15438		17.087	5.9721	1		+		1028	20334	620	620	1151	1151					0.06866427313855183
APAGPTAKSRE	11	Unmodified	_APAGPTAKSRE_					0	0	0			REV__ENSG00000100084|ENST00000263208|HIRA	REV__ENSG00000100084|ENST00000263208|HIRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7913208007812	2	542.790912	1083.56727	0.39293	0.00021328	-0.51358	-0.00027877	-0.12065	-6.5487E-05	542.7909893755856	26.757	0.70283	26.757	26.469	27.172	0					65	24	4	0	0	0	0.21521	1	4485	4485		29.841	0	1	461480	+		1029	14157	621	621	1152	1152					0.02883055840857196
APAGPTAKSRE	11	Unmodified	_APAGPTAKSRE_					0	0	0			REV__ENSG00000100084|ENST00000263208|HIRA	REV__ENSG00000100084|ENST00000263208|HIRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7913208007812	2	542.790912	1083.56727	0.49689	0.00026971	-0.67714	-0.00036755	-0.18025	-9.7838E-05	542.7909805197164	26.783	0.79655	26.762	26.419	27.215	-0.021412					73	27	4	0	0	0	0.14098	1	4492	4492		36.506	0	1	472850	+		1030	14157	621	621	1153	1153					0.02883055840857196
APAGPTAKSRE	11	Unmodified	_APAGPTAKSRE_					0	0	0			REV__ENSG00000100084|ENST00000263208|HIRA	REV__ENSG00000100084|ENST00000263208|HIRA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.291748046875	2	542.790912	1083.56727	0.49689	0.00026971	-0.67714	-0.00036755	-0.18025	-9.7838E-05	542.7909805197164	26.783	0.79655	26.762	26.419	27.215	-0.021412					73	27	4	0	0	0	0.23306	1	4446	4446		43.772	0	1	472850	+		1031	14157	621	621	1154	1154					0.02883055840857196
APAGPTAKSRE	11	Unmodified	_APAGPTAKSRE_					0	0	0			REV__ENSG00000100084|ENST00000263208|HIRA	REV__ENSG00000100084|ENST00000263208|HIRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2920532226562	2	542.790912	1083.56727	0.71805	0.00038975	-0.9413	-0.00051093	-0.22325	-0.00012118	542.7908435036034	26.788	0.76675	26.777	26.42	27.187	-0.01156					66	26	4	0	0	0	0.21521	1	4496	4496		29.841	0	1	469130	+		1032	14157	621	621	1155	1155					0.02883055840857196
APAGRKVGL	9	Unmodified	_APAGRKVGL_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7720031738281	2	434.771794	867.529036	-0.19555	-8.5018E-05	-0.24796	-0.00010781	-0.44351	-0.00019283	434.77218020182426	17.973	1.8876	17.973	17.66	19.547	0					167	65	5	0	0	0	0.00077644	4	1765	1765;1812;1862;1907		125.62	65.235	1	8455200			1033	5505	622	622	1156;1157;1158;1159	1156					0.08997214716850976
APAGRKVGL	9	Unmodified	_APAGRKVGL_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.77239990234375	2	434.771794	867.529036	-0.19951	-8.6743E-05	-0.26831	-0.00011665	-0.46782	-0.0002034	434.7721892349654	18.12	2.0933	18.002	17.663	19.756	-0.11739					186	72	5	0	0	0	1.576E-05	4	1838	1789;1838;1889;1932		154.46	76.019	1	8846300			1034	5505	622	622	1160;1161;1162;1163	1161					0.08997214716850976
APAGRKVGL	9	Unmodified	_APAGRKVGL_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.77227783203125	2	434.771794	867.529036	-0.31285	-0.00013602	-0.17875	-7.7714E-05	-0.49159	-0.00021373	434.7722304624902	18.155	2.0755	18.097	17.768	19.843	-0.058172					187	73	5	0	0	0	0.00077644	5	1839	1794;1839;1881;1924;1967		125.62	58.589	1	8899700			1035	5505	622	622	1164;1165;1166;1167;1168	1165					0.08997214716850976
APAGTRSQVKA	11	Unmodified	_APAGTRSQVKA_					0	0	0		ENST00000515035.5_1_5:149748314-149754605:+|nuORF;nc|ENSG00000070814|Q13428-5|TCOF1;TCOF1|p.K1138Qfs*4|1|0.2|ENSG00000070814|chr5:150392068-150392069|-/C|frameshift_variant;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1	ENST00000515035.5_1_5:149748314-149754605:+|nuORF	ENST00000515035.5_1_5:149748314-149754605:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7913208007812	2	543.306729	1084.59891	0.40014	0.0002174	2.5233	0.0013709	2.9234	0.0015883	543.8100180754208	26.871	0.73864	26.871	26.499	27.237	0					68	25	4	0	0	0	0.32667	1	4485	4485		13.042	4.8869	1	258690			1036	943	623	623	1169	1169					0.05999048594821943
APAGTTSSRVL	11	Unmodified	_APAGTTSSRVL_					0	0	0		nc|ENSG00000186660|Q96JP5-2|ZFP91;ENSG00000186660|ENST00000316059|ZFP91	nc|ENSG00000186660|Q96JP5-2|ZFP91	nc|ENSG00000186660|Q96JP5-2|ZFP91	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.293701171875	2	530.293288	1058.57202	0.41724	0.00022126	1.11	0.00058863	1.5273	0.00080989	530.2938304088779	26.736	0.5367	26.736	26.499	27.035	0					36	18	3	0	0	0	0.022858	1	4462	4462		61.09	31.249	1	183540			1037	7637	624	624	1170	1170					0.045079399836367884
APAGTTSSRVL	11	Unmodified	_APAGTTSSRVL_					0	0	0		nc|ENSG00000186660|Q96JP5-2|ZFP91;ENSG00000186660|ENST00000316059|ZFP91	nc|ENSG00000186660|Q96JP5-2|ZFP91	nc|ENSG00000186660|Q96JP5-2|ZFP91	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2939453125	2	530.293288	1058.57202	0.35029	0.00018576	0.99337	0.00052678	1.3437	0.00071253	530.2938247647862	26.76	0.44855	26.73	26.498	26.947	-0.029379					38	15	3	0	0	0	0.010431	1	4462	4462		68.76	33.828	1	195820			1038	7637	624	624	1171	1171					0.045079399836367884
APAGTTSSRVL	11	Unmodified	_APAGTTSSRVL_					0	0	0		nc|ENSG00000186660|Q96JP5-2|ZFP91;ENSG00000186660|ENST00000316059|ZFP91	nc|ENSG00000186660|Q96JP5-2|ZFP91	nc|ENSG00000186660|Q96JP5-2|ZFP91	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2944946289062	2	530.293288	1058.57202	0.64004	0.00033941	0.66636	0.00035336	1.3064	0.00069277	530.2936797714418	26.761	0.44366	26.75	26.541	26.984	-0.01156					37	15	3	0	0	0	0.036631	1	4472	4472		57.108	31.708	1	190620			1039	7637	624	624	1172	1172					0.045079399836367884
APAHAKKNK	9	Unmodified	_APAHAKKNK_					0	0	0			REV__ENST00000258530.7_1_12:105583925-105589069:-|nuORF	REV__ENST00000258530.7_1_12:105583925-105589069:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.197998046875	2	482.787976	963.561398	0.092252	4.4538E-05	-1.5226	-0.00073511	-1.4304	-0.00069057	482.7878128840337	22.258	0.41089	22.208	21.905	22.316	-0.049377					22	14	2	0	0	0	0.25811	1	3115	3115		5.2307	0.90143	1	43860	+		1040	19569	625	625	1173	1173					0.07816002119841414
APAHFPSVF	9	Unmodified	_APAHFPSVF_					0	0	0		ENST00000334801.7_1_11:118768619-118768991:-|nuORF	ENST00000334801.7_1_11:118768619-118768991:-|nuORF	ENST00000334801.7_1_11:118768619-118768991:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.8080749511719	2	486.750527	971.486502	0.17356	8.448E-05	0.10497	5.1092E-05	0.27852	0.00013557	486.7505561510064	22.211	0.8118	22.111	21.86	22.672	-0.10034					51	29	2	0	0	0	0.25066	1	3129	3129		11.64	2.2929	1	66069			1041	9474	626	626	1174	1174					-0.0003818041137719774
APAIGRYIRTL	11	Unmodified	_APAIGRYIRTL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.9150695800781	3	410.915423	1229.72444	0.045616	1.8744E-05	-0.41631	-0.00017107	-0.3707	-0.00015232	410.9152656676112	48.954	0.62722	48.954	48.694	49.321	0					51	22	3	0	0	0	0.37255	2	11231	11231;11282		14.838	6.0861	1	1125200			1042	3999	627	627	1175;1176	1175					0.11876760451059454
APAIGRYIRTL	11	Unmodified	_APAIGRYIRTL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.9151611328125	3	410.915423	1229.72444	0.17394	7.1476E-05	-0.49575	-0.00020371	-0.3218	-0.00013223	410.91519455122375	48.984	0.65685	49.029	48.768	49.425	0.044891					55	23	3	0	0	0	0.35173	2	11247	11247;11300		17.572	8.8201	1	1301100			1043	3999	627	627	1177;1178	1177					0.11876760451059454
APAIGRYIRTL	11	Unmodified	_APAIGRYIRTL_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.9149475097656	3	410.915423	1229.72444	0.0095644	3.9302E-06	-0.38606	-0.00015864	-0.37649	-0.00015471	410.9152221859883	48.904	0.78028	48.936	48.66	49.441	0.032043					58	27	3	0	0	0	0.3013	1	11203	11203		22.109	5.8343	1	1119700			1044	3999	627	627	1179	1179					0.11876760451059454
APAKAKGRL	9	Unmodified	_APAKAKGRL_					0	0	0		chr3:122928612-122928996|207|36.61|0.04|9.79|-|1|None,SEMA5B|1	chr3:122928612-122928996|207|36.61|0.04|9.79|-|1|None,SEMA5B|1	chr3:122928612-122928996|207|36.61|0.04|9.79|-|1|None,SEMA5B|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.29254150390625	2	456.292894	910.571235	-0.23804	-0.00010861	-0.32951	-0.00015035	-0.56755	-0.00025897	456.2927057982366	12.496	0.48299	12.496	12.332	12.815	0					29	15	3	0	0	0	0.079752	1	146	146		41.84	18.691	1	145880			1045	159	628	628	1180	1180					0.11237190125223151
APAKAKGRL	9	Unmodified	_APAKAKGRL_					0	0	0		chr3:122928612-122928996|207|36.61|0.04|9.79|-|1|None,SEMA5B|1	chr3:122928612-122928996|207|36.61|0.04|9.79|-|1|None,SEMA5B|1	chr3:122928612-122928996|207|36.61|0.04|9.79|-|1|None,SEMA5B|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2926940917969	2	456.292894	910.571235	-0.137	-6.2513E-05	-0.052761	-2.4075E-05	-0.18976	-8.6588E-05	456.2928426178123	12.504	0.58017	12.407	12.236	12.816	-0.096606					33	19	4	0	0	0	0.11461	1	147	147		36.127	12.979	1	166470			1046	159	628	628	1181	1181					0.11237190125223151
APAKAKGRL	9	Unmodified	_APAKAKGRL_					0	0	0		chr3:122928612-122928996|207|36.61|0.04|9.79|-|1|None,SEMA5B|1	chr3:122928612-122928996|207|36.61|0.04|9.79|-|1|None,SEMA5B|1	chr3:122928612-122928996|207|36.61|0.04|9.79|-|1|None,SEMA5B|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2925720214844	2	456.292894	910.571235	-0.28734	-0.00013111	-0.00079491	-3.6271E-07	-0.28814	-0.00013148	456.29288724635467	12.529	0.50583	12.461	12.313	12.819	-0.06806					36	16	4	0	0	0	0.088443	1	153	153		39.95	23.007	1	150100			1047	159	628	628	1182	1182					0.11237190125223151
APAKHLIASML	11	Oxidation (M)	_APAKHLIASM(Oxidation (M))L_		APAKHLIASM(1)L		APAKHLIASM(95)L	0	0	1		ENSG00000145632|ENST00000274289|PLK2;ENST00000502671.5_1_5:57749965-57753328:-|nuORF;ENST00000510629.1_1_5:57752724-57753235:-|nuORF	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.331787109375	2	584.331359	1166.64816	0.4348	0.00025407	0.27576	0.00016114	0.71056	0.0004152	584.3313774431152	32.778	0.75922	32.778	32.415	33.174	0					72	26	3	0	0	0	0.0011409	1	6267	6267		94.909	67.28	1	527770			1048	4661	629	629	1183	1183		586			0.07150620559400522
APAKHLIASML	11	Oxidation (M)	_APAKHLIASM(Oxidation (M))L_		APAKHLIASM(1)L		APAKHLIASM(95)L	0	0	1		ENSG00000145632|ENST00000274289|PLK2;ENST00000502671.5_1_5:57749965-57753328:-|nuORF;ENST00000510629.1_1_5:57752724-57753235:-|nuORF	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3313598632812	2	584.331359	1166.64816	0.41897	0.00024482	0.20106	0.00011749	0.62003	0.0003623	584.3313126443759	32.622	0.72071	32.678	32.37	33.091	0.055309					63	25	3	0	0	0	0.0011409	2	6262	6217;6262		94.909	67.28	1	645930			1049	4661	629	629	1184;1185	1185		586			0.07150620559400522
APAKHLIASML	11	Oxidation (M)	_APAKHLIASM(Oxidation (M))L_		APAKHLIASM(1)L		APAKHLIASM(86)L	0	0	1		ENSG00000145632|ENST00000274289|PLK2;ENST00000502671.5_1_5:57749965-57753328:-|nuORF;ENST00000510629.1_1_5:57752724-57753235:-|nuORF	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3319091796875	2	584.331359	1166.64816	0.3555	0.00020773	0.33428	0.00019533	0.68977	0.00040305	584.3315672652169	32.661	0.65226	32.716	32.39	33.042	0.054375					56	23	3	0	0	0	0.0023951	1	6227	6227		85.764	64.227	1	649730			1050	4661	629	629	1186	1186		586			0.07150620559400522
APAKKSTSL	9	Unmodified	_APAKKSTSL_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.76861572265625	2	451.768917	901.523281	-0.16345	-7.384E-05	2.5545	0.001154	2.391	0.0010802	451.7686508416389	12.941	0.49423	12.941	12.815	13.309	0					45	17	5	0	0	0	0.047483	1	276	276		53.833	15.682	1	307780			1051	2676	630	630	1187	1187					0.06858071414524147
APAKKSTSL	9	Unmodified	_APAKKSTSL_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.76861572265625	2	451.768917	901.523281	-0.15028	-6.7894E-05	2.0904	0.00094439	1.9401	0.0008765	451.7686407372041	12.999	0.54862	12.9	12.757	13.306	-0.099291					45	18	6	0	0	0	0.058995	1	292	292		49.554	5.1473	1	324960			1052	2676	630	630	1188	1188					0.06858071414524147
APAKKSTSL	9	Unmodified	_APAKKSTSL_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7684326171875	2	451.768917	901.523281	-0.22377	-0.00010109	0.50638	0.00022877	0.28261	0.00012767	451.76858010747515	12.989	0.538	12.921	12.791	13.329	-0.067495					47	18	5	0	0	0	0.014206	1	291	291		72.968	28.561	1	328710			1053	2676	630	630	1189	1189					0.06858071414524147
APAKTKESEEG	11	Unmodified	_APAKTKESEEG_					0	0	0		nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;nc|ENSG00000139220|O75334-2|PPFIA2	nc|ENSG00000139220|O75334-6|PPFIA2	nc|ENSG00000139220|O75334-6|PPFIA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.78564453125	2	573.785492	1145.55643	-0.084976	-4.8758E-05	0.74901	0.00042977	0.66404	0.00038101	573.7859090556362	14.222	0.31006	14.222	14.055	14.365	0					21	10	3	0	0	0	0.43842	1	663	663		6.1918	1.2948	1	58484			1054	4220	631	631	1190	1190					-0.010523913240831462
APAKTKESEEG	11	Unmodified	_APAKTKESEEG_					0	0	0		nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;nc|ENSG00000139220|O75334-2|PPFIA2	nc|ENSG00000139220|O75334-6|PPFIA2	nc|ENSG00000139220|O75334-6|PPFIA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.785888671875	2	573.785492	1145.55643	0.025319	1.4528E-05	0.54319	0.00031168	0.56851	0.0003262	573.7858699857711	14.291	0.31491	14.187	14.023	14.338	-0.10466					21	10	3	0	0	0	0.46969	1	693	693		2.086	0.026257	1	66950			1055	4220	631	631	1191	1191					-0.010523913240831462
APAKTKESEEG	11	Unmodified	_APAKTKESEEG_					0	0	0		nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;nc|ENSG00000139220|O75334-2|PPFIA2	nc|ENSG00000139220|O75334-6|PPFIA2	nc|ENSG00000139220|O75334-6|PPFIA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.7858276367188	2	573.785492	1145.55643	-0.096199	-5.5198E-05	0.4216	0.00024191	0.3254	0.00018671	573.7858070330357	14.314	0.52613	14.248	14.037	14.563	-0.066068					29	18	3	0	0	0	0.43842	1	676	676		6.1918	1.2948	1	67470			1056	4220	631	631	1192	1192					-0.010523913240831462
APALDLAPQ	9	Unmodified	_APALDLAPQ_					0	0	0		ENST00000332427.6_1_12:12837430-12849030:-|nuORF	ENST00000332427.6_1_12:12837430-12849030:-|nuORF	ENST00000332427.6_1_12:12837430-12849030:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2476806640625	2	448.247818	894.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.341	1	25.341	24.841	25.841	0								0	0	0	0.23091	1	4023	4023		12.532	4.6214	1				1057	9449	632	632	1193	1193					0.02962096006149295
APALHTLE	8	Unmodified	_APALHTLE_					0	0	0		nc|ENSG00000134874|Q86YF9-2|DZIP1;ENSG00000134874|ENST00000376829|DZIP1	nc|ENSG00000134874|Q86YF9-2|DZIP1	nc|ENSG00000134874|Q86YF9-2|DZIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2352294921875	2	426.23471	850.454868	-0.097376	-4.1505E-05	0.56716	0.00024174	0.46979	0.00020024	426.23486214361907	20.032	0.85686	20.032	19.713	20.57	0					60	31	2	0	0	0	0.33916	1	2534	2534		26.341	5.4701	1	772750			1058	3822	633	633	1194	1194					0.0236582683467077
APALKKAEI	9	Unmodified	_APALKKAEI_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000074370|Q93084-4|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.28460693359375	2	470.794935	939.575317	0.27165	0.00012789	-0.19594	-9.2248E-05	0.075711	3.5644E-05	470.79476317996017	24.062	0.429	24.023	23.737	24.166	-0.038927					26	14	2	0	0	0	0.25431	1	3661	3661		9.3831	0	1	115180			1059	1020	634	634	1195	1195					0.10311234828270699
APALPPPAF	9	Unmodified	_APALPPPAF_					0	0	0		ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.75	2	440.749996	879.485439	0.17897	7.8883E-05	0.0077754	3.427E-06	0.18675	8.231E-05	440.74987853856004	62.347	2.2983	62.347	61.727	64.026	0					227	84	4	0	0	0	0.00213	9	15366	15270;15317;15366;15417;15467;15518;15566;15645;15697		109.15	63.404	1	2387400			1060	5281	635	635	1196;1197;1198;1199;1200;1201;1202;1203;1204	1198					0.04087605219706347
APALPPPAF	9	Unmodified	_APALPPPAF_					0	0	0		ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.7499694824219	2	440.749996	879.485439	0.07736	3.4096E-05	0.12911	5.6907E-05	0.20647	9.1003E-05	440.7499278979962	62.309	2.3153	62.406	61.729	64.044	0.096985					196	83	3	0	0	0	0.0040737	9	15334	15234;15285;15334;15386;15437;15488;15534;15595;15661		93.763	57.297	1	2199000			1061	5281	635	635	1205;1206;1207;1208;1209;1210;1211;1212;1213	1207					0.04087605219706347
APALPPPAF	9	Unmodified	_APALPPPAF_					0	0	0		ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.75	2	440.749996	879.485439	0.15736	6.9357E-05	0.0034837	1.5355E-06	0.16085	7.0893E-05	440.7498808348517	62.324	2.2109	62.315	61.7	63.911	-0.0085526					212	80	4	0	0	0	0.0096669	11	15295	15244;15295;15348;15398;15446;15494;15553;15592;15635;15686;15763		79.935	55.261	1	2438200			1062	5281	635	635	1214;1215;1216;1217;1218;1219;1220;1221;1222;1223;1224	1215					0.04087605219706347
APALRPLVI	9	Unmodified	_APALRPLVI_					0	0	0		nc|ENSG00000245848|P49715-3|CEBPA;nc|ENSG00000245848|P49715-2|CEBPA;ENSG00000245848|ENST00000498907|CEBPA;nc|ENSG00000245848|P49715-4|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.31341552734375	2	475.313295	948.612037	0.68039	0.0003234	-0.28761	-0.00013671	0.39278	0.00018669	475.31306572423586	56.248	0.78053	56.248	55.963	56.744	0					72	28	3	0	0	0	0.044952	1	13461	13461		54.774	6.4277	1	3816600			1063	8576	636	636	1225	1225					0.1356753144484628
APALRPLVI	9	Unmodified	_APALRPLVI_					0	0	0		nc|ENSG00000245848|P49715-3|CEBPA;nc|ENSG00000245848|P49715-2|CEBPA;ENSG00000245848|ENST00000498907|CEBPA;nc|ENSG00000245848|P49715-4|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.31341552734375	2	475.313295	948.612037	0.80054	0.00038051	-0.40542	-0.0001927	0.39512	0.00018781	475.3129962617495	56.146	0.73795	56.217	55.958	56.696	0.070885					57	26	3	0	0	0	0.019896	2	13487	13439;13487		64.236	6.765	1	4324900			1064	8576	636	636	1226;1227	1227					0.1356753144484628
APALRPLVI	9	Unmodified	_APALRPLVI_					0	0	0		nc|ENSG00000245848|P49715-3|CEBPA;nc|ENSG00000245848|P49715-2|CEBPA;ENSG00000245848|ENST00000498907|CEBPA;nc|ENSG00000245848|P49715-4|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.3133239746094	2	475.313295	948.612037	0.84613	0.00040217	-0.30561	-0.00014526	0.54052	0.00025691	475.3130572964343	56.246	0.95045	56.227	55.915	56.865	-0.019081					73	34	3	0	0	0	0.044952	2	13448	13448;13492		54.774	6.4277	1	5512700			1065	8576	636	636	1228;1229	1228					0.1356753144484628
APALTLKNL	9	Unmodified	_APALTLKNL_					0	0	0		nc|ENSG00000118946|O14917-2|PCDH17;ENSG00000118946|ENST00000377918|PCDH17	nc|ENSG00000118946|O14917-2|PCDH17	nc|ENSG00000118946|O14917-2|PCDH17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.7947998046875	2	470.794935	939.575317	-0.057199	-2.6929E-05	0.24673	0.00011616	0.18953	8.923E-05	470.79485323646657	23.915	0.41557	23.915	23.669	24.085	0					25	13	2	0	0	0	0.18208	1	3575	3575		26.268	0	1	119850			1066	2851	637	637	1230	1230					0.10311234828293436
APALVRLSL	9	Unmodified	_APALVRLSL_					0	0	0		ENST00000316846.2_11:65545618-65547282:-|nuORF;ENSG00000254470|ENST00000532090|AP5B1	ENST00000316846.2_11:65545618-65547282:-|nuORF	ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.9175109863281	2	470.302927	938.591301	0.0021232	9.9854E-07	0.18239	8.578E-05	0.18452	8.6778E-05	470.3030537097667	59.182	0.47734	59.182	58.968	59.445	0					24	16	2	0	0	0	0.082647	1	14381	14381		61.602	23.426	1	264690			1067	8611	638	638	1231	1231					0.11954941065175717
APALVRLSL	9	Unmodified	_APALVRLSL_					0	0	0		ENST00000316846.2_11:65545618-65547282:-|nuORF;ENSG00000254470|ENST00000532090|AP5B1	ENST00000316846.2_11:65545618-65547282:-|nuORF	ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.30322265625	2	470.302927	938.591301	0.31851	0.0001498	-0.25266	-0.00011883	0.065855	3.0972E-05	470.30286129391453	59.125	0.41938	59.111	58.889	59.309	-0.014271					24	14	2	0	0	0	0.026579	1	14364	14364		61.602	15.902	1	233750			1068	8611	638	638	1232	1232					0.11954941065175717
APAMIRISL	9	Oxidation (M)	_APAM(Oxidation (M))IRISL_		APAM(1)IRISL		APAM(44)IRISL	0	0	1		nc|ENSG00000157680|O75912|DGKI;ENSG00000157680|ENST00000614521|DGKI	nc|ENSG00000157680|O75912|DGKI	nc|ENSG00000157680|O75912|DGKI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2859191894531	2	494.28642	986.558287	0.42667	0.0002109	-2.0004	-0.00098876	-1.5737	-0.00077787	494.2856313494082	52.191	0.65294	52.242	51.926	52.579	0.050575					35	23	2	0	0	0	0.073988	1	12241	12241		43.982	9.7945	1	597240			1069	5321	639	639	1233	1233		642			0.06446990950826148
APAPAAQRL	9	Unmodified	_APAPAAQRL_					0	0	0		nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3;ENST00000471498.5_1_1:28324859-28384546:-|nuORF;nc|ENSG00000158161|Q99504-2|EYA3;ENST00000468665.1_1_1:28337454-28343730:-|nuORF	nc|ENSG00000158161|Q99504-4|EYA3	nc|ENSG00000158161|Q99504-4|EYA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.7613525390625	2	447.761426	893.5083	0.17423	7.8014E-05	-0.29363	-0.00013148	-0.1194	-5.3464E-05	447.7612854060088	25.125	0.66123	25.125	24.843	25.504	0					57	22	3	0	0	0	0.068501	1	3930	3930		46.021	6.0636	1	413730			1070	5344	640	640	1234	1234					0.057286243371777346
APAPAAQRL	9	Unmodified	_APAPAAQRL_					0	0	0		nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3;ENST00000471498.5_1_1:28324859-28384546:-|nuORF;nc|ENSG00000158161|Q99504-2|EYA3;ENST00000468665.1_1_1:28337454-28343730:-|nuORF	nc|ENSG00000158161|Q99504-4|EYA3	nc|ENSG00000158161|Q99504-4|EYA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.76116943359375	2	447.761426	893.5083	-0.0082432	-3.691E-06	-0.24694	-0.00011057	-0.25519	-0.00011426	447.76135697580384	25.133	0.70429	25.077	24.809	25.514	-0.055931					61	24	4	0	0	0	0.015402	1	3955	3955		71.134	13.662	1	452390			1071	5344	640	640	1235	1235					0.057286243371777346
APAPAAQRL	9	Unmodified	_APAPAAQRL_					0	0	0		nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3;ENST00000471498.5_1_1:28324859-28384546:-|nuORF;nc|ENSG00000158161|Q99504-2|EYA3;ENST00000468665.1_1_1:28337454-28343730:-|nuORF	nc|ENSG00000158161|Q99504-4|EYA3	nc|ENSG00000158161|Q99504-4|EYA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.7613830566406	2	447.761426	893.5083	-0.1695	-7.5895E-05	0.022501	1.0075E-05	-0.147	-6.582E-05	447.76144310419687	25.145	0.71044	25.114	24.833	25.543	-0.03141					59	24	3	0	0	0	0.027237	1	3943	3943		61.357	13.012	1	458200			1072	5344	640	640	1236	1236					0.057286243371777346
APAPAARLQ	9	Unmodified	_APAPAARLQ_					0	0	0		ENST00000602583.5_1_16:85741395-85741617:-|nuORF	ENST00000602583.5_1_16:85741395-85741617:-|nuORF	ENST00000602583.5_1_16:85741395-85741617:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.7613220214844	2	447.761426	893.5083	0.17423	7.8014E-05	-0.29363	-0.00013148	-0.1194	-5.3464E-05	447.7612854060088	25.125	0.66123	25.125	24.843	25.504	0					57	22	3	0	0	0	0.088391	1	3986	3986		39.957	0	1	413730			1073	12269	641	641	1237	1237					0.057286243371777346
APAPAARLQ	9	Unmodified	_APAPAARLQ_					0	0	0		ENST00000602583.5_1_16:85741395-85741617:-|nuORF	ENST00000602583.5_1_16:85741395-85741617:-|nuORF	ENST00000602583.5_1_16:85741395-85741617:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.7613830566406	2	447.761426	893.5083	-0.0082432	-3.691E-06	-0.24694	-0.00011057	-0.25519	-0.00011426	447.76135697580384	25.133	0.70429	25.077	24.809	25.514	-0.055931					61	24	4	0	0	0	0.079066	1	4004	4004		42.095	0	1	452390			1074	12269	641	641	1238	1238					0.057286243371777346
APAPAARLQ	9	Unmodified	_APAPAARLQ_					0	0	0		ENST00000602583.5_1_16:85741395-85741617:-|nuORF	ENST00000602583.5_1_16:85741395-85741617:-|nuORF	ENST00000602583.5_1_16:85741395-85741617:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.7613525390625	2	447.761426	893.5083	-0.1695	-7.5895E-05	0.022501	1.0075E-05	-0.147	-6.582E-05	447.76144310419687	25.145	0.71044	25.114	24.833	25.543	-0.03141					59	24	3	0	0	0	0.12846	1	3991	3991		34.102	0	1	458200			1075	12269	641	641	1239	1239					0.057286243371777346
APAPERKK	8	Unmodified	_APAPERKK_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.77691650390625	2	448.769252	895.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.509	1	33.575	33.075	34.075	0.066704								0	0	0	0.34734	1	6502	6502		15.847	1.0089	1				1076	4886	642	642	1240	1240					0.07200910854237463
APAPEVGRTL	10	Unmodified	_APAPEVGRTL_					0	0	0		nc|ENSG00000115762|Q96CS7-6|PLEKHB2	nc|ENSG00000115762|Q96CS7-6|PLEKHB2	nc|ENSG00000115762|Q96CS7-6|PLEKHB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.8394470214844	2	505.785099	1009.55564	-0.87171	-0.0004409	2.3663	0.0011968	1.4946	0.00075593	505.7860271553634	34.974	0.76876	35.049	34.713	35.481	0.075306					44	27	2	0	0	0	0.26647	1	6960	6960		28.234	3.3521	1	418350			1077	12664	643	643	1241	1241					0.051248588175326404
APAPGALAPS	10	Unmodified	_APAPGALAPS_					0	0	0		ENST00000609776.1_1_2:222437801-222438248:+|nuORF	ENST00000609776.1_1_2:222437801-222438248:+|nuORF	ENST00000609776.1_1_2:222437801-222438248:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2349548339844	2	426.23471	850.454868	0.058148	2.4785E-05	0.49767	0.00021212	0.55582	0.00023691	426.234817170153	20.229	1.3403	20.114	19.434	20.774	-0.11524					101	47	4	0	0	0	0.15638	1	2504	2504		37.974	0	1	824710			1078	12331	644	644	1242	1242					0.0236582683467077
APAPGALAPS	10	Unmodified	_APAPGALAPS_					0	0	0		ENST00000609776.1_1_2:222437801-222438248:+|nuORF	ENST00000609776.1_1_2:222437801-222438248:+|nuORF	ENST00000609776.1_1_2:222437801-222438248:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.23492431640625	2	426.23471	850.454868	0.21919	9.3428E-05	0.30414	0.00012963	0.52333	0.00022306	426.23475143446956	20.134	0.93097	20.078	19.762	20.693	-0.055693					73	33	3	0	0	0	0.10934	1	2463	2463		46.021	2.2486	1	898400			1079	12331	644	644	1243	1243					0.0236582683467077
APAPGDVPK	9	Unmodified	_APAPGDVPK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.23529052734375	2	426.23471	850.454868	-0.097376	-4.1505E-05	0.56716	0.00024174	0.46979	0.00020024	426.23486214361907	20.032	0.85686	20.032	19.713	20.57	0					60	31	2	0	0	0	0.12642	1	2484	2484		34.402	5.3201	1	772750			1080	2429	645	645	1244	1244					0.0236582683467077
APAPGDVPK	9	Unmodified	_APAPGDVPK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.23468017578125	2	426.23471	850.454868	0.058148	2.4785E-05	0.49767	0.00021212	0.55582	0.00023691	426.234817170153	20.229	1.3403	20.114	19.434	20.774	-0.11524					101	47	4	0	0	0	0.17277	1	2574	2574		27.629	1.2875	1	824710			1081	2429	645	645	1245	1245					0.0236582683467077
APAPGDVPK	9	Unmodified	_APAPGDVPK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.2350769042969	2	426.23471	850.454868	0.21919	9.3428E-05	0.30414	0.00012963	0.52333	0.00022306	426.23475143446956	20.134	0.93097	20.078	19.762	20.693	-0.055693					73	33	3	0	0	0	0.17277	1	2518	2518		27.629	1.2875	1	898400			1082	2429	645	645	1246	1246					0.0236582683467077
APAPIHNQF	9	Unmodified	_APAPIHNQF_					0	0	0		nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF	nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.758544921875	2	497.758884	993.503215	0.42175	0.00020993	-0.77359	-0.00038506	-0.35184	-0.00017513	497.7584658480333	33.433	1.3808	33.433	33.091	34.472	0					125	49	4	0	0	0	1.021E-23	5	6488	6441;6488;6531;6581;6594		230.2	185.8	1	4577100			1083	666	646	646	1247;1248;1249;1250;1251	1248					0.006203204745702351
APAPIHNQF	9	Unmodified	_APAPIHNQF_					0	0	0		nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF	nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7586975097656	2	497.758884	993.503215	0.51016	0.00025394	-0.73066	-0.00036369	-0.2205	-0.00010976	497.7584729513074	33.289	1.0755	33.344	33.063	34.138	0.055309					115	38	4	0	0	0	1.6676E-16	3	6446	6446;6494;6546		207.55	156.69	1	5099800			1084	666	646	646	1252;1253;1254	1252					0.006203204745702351
APAPIHNQF	9	Unmodified	_APAPIHNQF_					0	0	0		nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF	nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7591552734375	2	497.758884	993.503215	0.20637	0.00010272	-0.25342	-0.00012614	-0.047054	-2.3421E-05	497.7587201340209	33.309	1.0445	33.375	33.055	34.099	0.0667					108	37	4	0	0	0	1.021E-23	4	6433	6384;6433;6483;6528		230.2	179.35	1	4955600			1085	666	646	646	1255;1256;1257;1258	1256					0.006203204745702351
APAPLRQVL	9	Unmodified	_APAPLRQVL_					0	0	0		ENST00000496720.1_1_22:50722364-50724624:-|nuORF	ENST00000496720.1_1_22:50722364-50724624:-|nuORF	ENST00000496720.1_1_22:50722364-50724624:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2341613769531	2	482.800552	963.58655	0.30406	0.0001468	-0.24427	-0.00011794	0.059787	2.8865E-05	482.8001053678525	44.339	0.24612	44.414	44.229	44.475	0.07505					12	8	2	0	0	0	0.22596	1	9780	9780		15.847	8.558	1	153970			1086	11240	647	647	1259	1259					0.10330056922407493
APAPLSTKSF	10	Unmodified	_APAPLSTKSF_					0	0	0		ENSG00000069011|ENST00000265340|PITX1	ENSG00000069011|ENST00000265340|PITX1	ENSG00000069011|ENST00000265340|PITX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3019104003906	2	509.782025	1017.5495	0.10789	5.4998E-05	0.78288	0.0003991	0.89077	0.0004541	509.78232350589036	52.465	0.35408	52.464	52.141	52.495	-0.00080872					13	12	2	0	0	0	0.28898	1	12279	12279		11.64	0	1	221200			1087	896	648	648	1260	1260					0.04142340586008686
APAPPKAEA	9	Unmodified	_APAPPKAEA_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000399247.6_1_6:29694709-29694913:-|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2347106933594	2	426.23471	850.454868	-0.097376	-4.1505E-05	0.56716	0.00024174	0.46979	0.00020024	426.23486214361907	20.032	0.85686	20.032	19.713	20.57	0					60	31	2	0	0	0	0.05341	1	2437	2437		51.63	3.284	1	772750			1088	8055	649	649	1261	1261					0.023658268346594014
APAPPKAEA	9	Unmodified	_APAPPKAEA_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000399247.6_1_6:29694709-29694913:-|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.234619140625	2	426.23471	850.454868	0.058148	2.4785E-05	0.49767	0.00021212	0.55582	0.00023691	426.234817170153	20.229	1.3403	20.114	19.434	20.774	-0.11524					101	47	4	0	0	0	0.016723	1	2458	2458		69.105	6.5322	1	824710			1089	8055	649	649	1262	1262					0.023658268346594014
APAPPKAEA	9	Unmodified	_APAPPKAEA_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000399247.6_1_6:29694709-29694913:-|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.234619140625	2	426.23471	850.454868	0.21919	9.3428E-05	0.30414	0.00012963	0.52333	0.00022306	426.23475143446956	20.134	0.93097	20.078	19.762	20.693	-0.055693					73	33	3	0	0	0	0.037019	1	2418	2418		57.722	6.0922	1	898400			1090	8055	649	649	1263	1263					0.023658268346594014
APAPPPVAV	9	Unmodified	_APAPPPVAV_					0	0	0		ENST00000558180.2_1_16:54318400-54319510:-|nuORF;ENSG00000177508|ENST00000329734|IRX3	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.7417907714844	2	409.742171	817.469789	0.044083	1.8063E-05	0.66708	0.00027333	0.71116	0.00029139	409.74229698952655	46.739	1.0357	46.739	46.375	47.411	0					80	36	3	0	0	0	0.0096669	1	10504	10504		79.935	34.185	1	2778000			1091	6993	650	650	1264	1264					0.0537531870265866
APAPPPVAV	9	Unmodified	_APAPPPVAV_					0	0	0		ENST00000558180.2_1_16:54318400-54319510:-|nuORF;ENSG00000177508|ENST00000329734|IRX3	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2172546386719	2	409.742171	817.469789	0.17854	7.3156E-05	0.75767	0.00031045	0.93621	0.00038361	409.74235095007066	46.661	1.1887	46.715	46.383	47.572	0.054375					90	42	3	0	0	0	0.15605	1	10623	10623		28.173	13.592	1	3062500			1092	6993	650	650	1265	1265					0.0537531870265866
APAPPSKVI	9	Unmodified	_APAPPSKVI_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL;ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2684631347656	2	440.268553	878.522553	0.036691	1.6154E-05	-0.23895	-0.0001052	-0.20226	-8.9047E-05	440.2682790669129	32.973	0.49812	33.028	32.786	33.284	0.055309					33	17	3	0	0	0	0.13643	1	6348	6348		38.176	16.429	1	275350			1093	12579	651	651	1266	1266					0.07843276765481733
APAPPSKVI	9	Unmodified	_APAPPSKVI_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL;ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	440.268553	878.522553	0.0080437	3.5414E-06	-0.016783	-7.3888E-06	-0.0087389	-3.8475E-06	440.26841996550644	33.082	0.61142	33.082	32.782	33.393	0	0.045018	0.00013117	NaN	62.573	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239290			1094	12579	651	651							0.07843276765481733
APAPPSKVI	9	Unmodified	_APAPPSKVI_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL;ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	440.268553	878.522553	0.09311	4.0994E-05	-0.22147	-9.7508E-05	-0.12836	-5.6515E-05	440.2684130509951	32.945	0.46695	33	32.765	33.232	0.054371	-0.03664	-4.9073E-05	NaN	62.573	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349300			1095	12579	651	651							0.07843276765481733
APAPRPSL	8	Unmodified	_APAPRPSL_					0	0	0		nc|ENSG00000140829|Q92620-2|DHX38;ENSG00000140829|ENST00000268482|DHX38	nc|ENSG00000140829|Q92620-2|DHX38	nc|ENSG00000140829|Q92620-2|DHX38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.737548828125	2	404.73742	807.460287	-0.36823	-0.00014904	0.73513	0.00029753	0.3669	0.0001485	404.73768036028906	28.291	0.60541	28.286	27.994	28.599	-0.0042572					44	21	3	0	0	0	0.31518	1	4919	4919		29.082	3.6823	1	253250			1096	4336	652	652	1267	1267					0.048855504171342545
APAPRPSLL	9	Unmodified	_APAPRPSLL_					0	0	0		nc|ENSG00000140829|Q92620-2|DHX38;ENSG00000140829|ENST00000268482|DHX38	nc|ENSG00000140829|Q92620-2|DHX38	nc|ENSG00000140829|Q92620-2|DHX38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.27947998046875	2	461.279452	920.544351	-0.019633	-9.0561E-06	0.35821	0.00016523	0.33858	0.00015618	461.2794605549798	40.087	0.61071	40.087	39.777	40.388	0					53	21	3	0	0	0	0.020233	2	8498	8498;8553		63.961	12.331	1	1039700			1097	4336	653	653	1268;1269	1268					0.08090081514046688
APAPRPSLL	9	Unmodified	_APAPRPSLL_					0	0	0		nc|ENSG00000140829|Q92620-2|DHX38;ENSG00000140829|ENST00000268482|DHX38	nc|ENSG00000140829|Q92620-2|DHX38	nc|ENSG00000140829|Q92620-2|DHX38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.27960205078125	2	461.279452	920.544351	0.27192	0.00012543	0.14338	6.6136E-05	0.4153	0.00019157	461.2793594782542	39.966	0.59314	40.058	39.75	40.343	0.09267					50	20	3	0	0	0	0.014206	1	8460	8460		72.968	12.894	1	1153700			1098	4336	653	653	1270	1270					0.08090081514046688
APAPRPSLL	9	Unmodified	_APAPRPSLL_					0	0	0		nc|ENSG00000140829|Q92620-2|DHX38;ENSG00000140829|ENST00000268482|DHX38	nc|ENSG00000140829|Q92620-2|DHX38	nc|ENSG00000140829|Q92620-2|DHX38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.279541015625	2	461.279452	920.544351	0.2331	0.00010753	0.13255	6.1143E-05	0.36565	0.00016867	461.2793431966588	39.903	0.55145	40.002	39.736	40.288	0.099407					52	19	3	0	0	0	0.014206	1	8445	8445		72.968	12.894	1	1202700			1099	4336	653	653	1271	1271					0.08090081514046688
APAPSTVHF	9	Unmodified	_APAPSTVHF_					0	0	0		nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.74017333984375	2	463.74016	925.465767	0.049564	2.2985E-05	0.18769	8.7039E-05	0.23725	0.00011002	463.7400747058103	38.027	0.86728	38.027	37.679	38.546	0					59	30	3	0	0	0	0.0036555	2	7858	7858;7907		97.075	52.668	1	954460			1100	5156	654	654	1272;1273	1272					5.229208954915521E-05
APAPSTVHF	9	Unmodified	_APAPSTVHF_					0	0	0		nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7400207519531	2	463.74016	925.465767	0.086749	4.0229E-05	0.17116	7.9375E-05	0.25791	0.0001196	463.74006133125323	37.926	0.82398	38.017	37.744	38.568	0.090881					69	29	4	0	0	0	0.00012008	2	7842	7842;7892		137.59	84.01	1	1118600			1101	5156	654	654	1274;1275	1274					5.229208954915521E-05
APAPSTVHF	9	Unmodified	_APAPSTVHF_					0	0	0		nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7401123046875	2	463.74016	925.465767	0.1491	6.9141E-05	0.070352	3.2625E-05	0.21945	0.00010177	463.74005826339004	37.895	0.80862	37.993	37.682	38.491	0.097527					60	28	3	0	0	0	0.00097449	2	7853	7806;7853		123.1	78.689	1	1053600			1102	5156	654	654	1276;1277	1277					5.229208954915521E-05
APAPTARNKL	10	Unmodified	_APAPTARNKL_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.8064575195312	2	519.806365	1037.59818	0.33217	0.00017266	-0.072595	-3.7735E-05	0.25957	0.00013493	519.8062854415726	17.84	0.70045	17.84	17.598	18.299	0					79	23	5	0	0	0	0.11865	1	1758	1758		43.982	21.246	1	469850			1103	5701	655	655	1278	1278					0.08088253945743418
APAPTARNKL	10	Unmodified	_APAPTARNKL_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.806396484375	2	519.806365	1037.59818	0.16362	8.5049E-05	-0.025927	-1.3477E-05	0.13769	7.1572E-05	519.8063320673285	17.98	0.69184	17.863	17.603	18.295	-0.11739					73	23	4	0	0	0	0.11062	1	1803	1803		45.74	12.295	1	478110			1104	5701	655	655	1279	1279					0.08088253945743418
APAPTARNKL	10	Unmodified	_APAPTARNKL_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	519.806365	1037.59818	0.15561	8.0888E-05	0.036008	1.8717E-05	0.19162	9.9605E-05	519.8063776552583	17.989	0.68921	17.929	17.65	18.339	-0.060429	0.05148	5.1576E-05	NaN	45.74	79	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	441590			1105	5701	655	655							0.08088253945743418
APAPVGPLVGL	11	Unmodified	_APAPVGPLVGL_					0	0	0		ENSG00000153071|ENST00000320816|DAB2;nc|ENSG00000153071|P98082-3|DAB2;nc|ENSG00000153071|P98082-2|DAB2	ENSG00000153071|ENST00000320816|DAB2	ENSG00000153071|ENST00000320816|DAB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.802978515625	2	495.80276	989.590967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.298	1	72.355	71.855	72.855	0.056572								0	0	0	0.17731	1	18414	18414		36.044	14.298	1				1106	5058	656	656	1280	1280					0.09575521345345805
APAQLLFLL	9	Unmodified	_APAQLLFLL_					0	0	0		nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000243063|A0A075B6H7|IGKV3-7	nc|ENSG00000244437|P01624|IGKV3-15	nc|ENSG00000244437|P01624|IGKV3-15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.30792236328125	2	493.307678	984.600803	0.13276	6.5493E-05	0.29478	0.00014542	0.42754	0.00021091	493.3078323097417	96.171	0.79167	96.171	95.896	96.688	0					209	75	4	0	0	0	0.072844	1	25687	25687		44.407	3.9584	1	1063200			1107	12920	657	657	1281	1281					0.10788709350720183
APAQLLFLL	9	Unmodified	_APAQLLFLL_					0	0	0		nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000243063|A0A075B6H7|IGKV3-7	nc|ENSG00000244437|P01624|IGKV3-15	nc|ENSG00000244437|P01624|IGKV3-15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.3081359863281	2	493.307678	984.600803	0.25875	0.00012764	0.13202	6.5125E-05	0.39076	0.00019277	493.3078066383766	96.034	0.68216	96.111	95.848	96.531	0.077408					190	62	4	0	0	0	0.11517	1	25623	25623		36.044	3.9272	1	1555600			1108	12920	657	657	1282	1282					0.10788709350720183
APAQLLFLL	9	Unmodified	_APAQLLFLL_					0	0	0		nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000243063|A0A075B6H7|IGKV3-7	nc|ENSG00000244437|P01624|IGKV3-15	nc|ENSG00000244437|P01624|IGKV3-15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.30804443359375	2	493.307678	984.600803	0.39254	0.00019364	0.22227	0.00010965	0.61481	0.00030329	493.3077835082482	96.183	0.67662	96.179	95.897	96.574	-0.0038147					180	66	3	0	0	0	0.048175	1	25706	25706		53.576	13.127	1	1261000			1109	12920	657	657	1283	1283					0.10788709350720183
APAQLPLVL	9	Unmodified	_APAQLPLVL_					0	0	0		ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.29180908203125	2	461.292028	920.569503	-0.18614	-8.5864E-05	0.53021	0.00024458	0.34407	0.00015872	461.2921334413016	76.078	0.57283	76.078	75.794	76.367	0					47	20	3	0	0	0	0.1669	1	19567	19567		28.487	11.545	1	491070			1110	6776	658	658	1284	1284					0.10604136316624135
APAQLPLVL	9	Unmodified	_APAQLPLVL_					0	0	0		ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.29180908203125	2	461.292028	920.569503	-0.034576	-1.595E-05	0.33088	0.00015263	0.2963	0.00013668	461.2920813123844	75.986	0.81018	76.04	75.782	76.592	0.053413					49	28	3	0	0	0	0.11517	2	19534	19534;19595		36.044	36.044	1	517100			1111	6776	658	658	1285;1286	1285					0.10604136316624135
APAQLPLVL	9	Unmodified	_APAQLPLVL_					0	0	0		ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.2920227050781	2	461.292028	920.569503	0.1739	8.0218E-05	-0.52903	-0.00024404	-0.35513	-0.00016382	461.2919453731981	76.104	0.54299	76.072	75.803	76.346	-0.031479					47	19	4	0	0	0	0.11517	1	19582	19582		36.044	12.896	1	486090			1112	6776	658	658	1287	1287					0.10604136316624135
APAQPPSQTF	10	Unmodified	_APAQPPSQTF_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;ENST00000504956.5_1_4:87856214-87968836:+|nuORF	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.81884765625	2	522.261456	1042.50836	0.18305	9.56E-05	-0.017371	-9.072E-06	0.16568	8.6528E-05	522.2614927426179	39.823	0.48418	39.823	39.54	40.024	0					31	17	2	0	0	0	0.28645	1	8420	8420		27.223	5.4766	1	232480			1113	6639	659	659	1288	1288					-0.011194204534831442
APAQPPSQTF	10	Unmodified	_APAQPPSQTF_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;ENST00000504956.5_1_4:87856214-87968836:+|nuORF	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8187866210938	2	522.261456	1042.50836	0.40664	0.00021237	-0.42954	-0.00022433	-0.022899	-1.1959E-05	522.2613224982966	39.57	0.58575	39.669	39.424	40.01	0.099403					35	20	2	0	0	0	0.27529	1	8366	8366		23.79	2.0431	1	237400			1114	6639	659	659	1289	1289					-0.011194204534831442
APAQRAQSL	9	Unmodified	_APAQRAQSL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2617492675781	2	471.261791	940.509028	-0.073826	-3.4792E-05	-0.21127	-9.9563E-05	-0.2851	-0.00013435	471.2617103799163	18.493	0.82996	18.493	17.96	18.79	0					105	28	5	0	0	0	4.3828E-07	2	1958	1910;1958		163.04	80.507	1	1014900			1115	7947;12169	660	660	1290;1291	1291					0.03639418986244891
APAQRAQSL	9	Unmodified	_APAQRAQSL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2617492675781	2	471.261791	940.509028	-0.0259	-1.2206E-05	-0.097618	-4.6004E-05	-0.12352	-5.8209E-05	471.2616808488066	18.59	0.85297	18.472	17.957	18.81	-0.11739					89	29	4	0	0	0	3.6949E-07	3	1997	1936;1946;1997		165.72	79.388	1	995610			1116	7947;12169	660	660	1292;1293;1294	1294					0.03639418986244891
APAQRAQSL	9	Unmodified	_APAQRAQSL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2618103027344	2	471.261791	940.509028	-0.13665	-6.44E-05	-0.17201	-8.1063E-05	-0.30867	-0.00014546	471.2617441123233	18.578	0.75751	18.52	18.059	18.816	-0.058172					88	26	5	0	0	0	0.00010125	2	1948	1948;1996		140.63	67.807	1	1147300			1117	7947;12169	660	660	1295;1296	1295					0.03639418986244891
APARASVIL	9	Unmodified	_APARASVIL_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000471226.5_1_3:183906109-183906933:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7586669921875	2	449.279452	896.544351	0.55618	0.00024988	-0.60169	-0.00027033	-0.045516	-2.0449E-05	449.27921026037035	37.111	0.80103	37.111	36.815	37.616	0					67	28	3	0	0	0	0.14961	1	7586	7586		41.84	14.211	1	694270			1118	5511	661	661	1297	1297					0.09194081514044683
APARASVIL	9	Unmodified	_APARASVIL_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000471226.5_1_3:183906109-183906933:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.75872802734375	2	449.279452	896.544351	0.25359	0.00011393	-0.2511	-0.00011281	0.0024943	1.1207E-06	449.2793294906509	37.008	0.76183	37.095	36.79	37.552	0.08741					64	27	3	0	0	0	0.12743	1	7556	7556		37.974	13.953	1	692250			1119	5511	661	661	1298	1298					0.09194081514044683
APARASVIL	9	Unmodified	_APARASVIL_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000471226.5_1_3:183906109-183906933:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.7587890625	2	449.279452	896.544351	0.47826	0.00021487	-0.54806	-0.00024623	-0.069797	-3.1358E-05	449.27920854657754	36.966	0.65743	37.059	36.79	37.448	0.093014					57	23	3	0	0	0	0.16284	1	7588	7588		24.021	17.297	1	644960			1120	5511	661	661	1299	1299					0.09194081514044683
APARGLLLF	9	Unmodified	_APARGLLLF_					0	0	0		nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2976379394531	2	479.297645	956.580737	0.1851	8.8718E-05	-0.12208	-5.8512E-05	0.063021	3.0206E-05	479.2974819129025	62.992	0.78529	62.992	62.689	63.474	0					79	28	4	0	0	0	0.037153	1	15597	15597		54.774	10.367	1	2713700			1121	509	662	662	1300	1300					0.10070958410756248
APARGLLLF	9	Unmodified	_APARGLLLF_					0	0	0		nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.297607421875	2	479.297645	956.580737	0.30804	0.00014764	-0.23474	-0.00011251	0.073302	3.5133E-05	479.29739026771165	62.907	0.75772	63.003	62.688	63.445	0.095722					77	27	4	0	0	0	0.037153	1	15558	15558		54.774	1.198	1	2740400			1122	509	662	662	1301	1301					0.10070958410756248
APARGLLLF	9	Unmodified	_APARGLLLF_					0	0	0		nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.29754638671875	2	479.297645	956.580737	0.22216	0.00010648	-0.11258	-5.3961E-05	0.10958	5.252E-05	479.2974324659334	62.99	0.73323	62.982	62.675	63.408	-0.0085526					81	26	4	0	0	0	0.090484	1	15586	15586		54.774	10.367	1	2807800			1123	509	662	662	1302	1302					0.10070958410756248
APARLFAL	8	Unmodified	_APARLFAL_					0	0	0		nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4	nc|ENSG00000124145|P31431-2|SDC4	nc|ENSG00000124145|P31431-2|SDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.76324462890625	2	429.763438	857.512323	0.17698	7.6058E-05	-0.26899	-0.0001156	-0.092012	-3.9543E-05	429.7631728502226	54.203	0.7043	54.203	53.946	54.651	0					52	25	3	0	0	0	0.10069	2	12849	12849;12900		60.39	9.5345	1	1184200			1124	3132	663	663	1303;1304	1303					0.07786713830898861
APARLFAL	8	Unmodified	_APARLFAL_					0	0	0		nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4	nc|ENSG00000124145|P31431-2|SDC4	nc|ENSG00000124145|P31431-2|SDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.7632751464844	2	429.763438	857.512323	0.11507	4.9452E-05	-0.18137	-7.7947E-05	-0.066303	-2.8495E-05	429.7632462390112	54.166	0.73643	54.229	53.93	54.667	0.063202					61	27	3	0	0	0	0.065797	2	12832	12832;12882		70.716	10.326	1	1299800			1125	3132	663	663	1305;1306	1305					0.07786713830898861
APARLFAL	8	Unmodified	_APARLFAL_					0	0	0		nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4	nc|ENSG00000124145|P31431-2|SDC4	nc|ENSG00000124145|P31431-2|SDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.7633361816406	2	429.763438	857.512323	0.13432	5.7726E-05	-0.16711	-7.1817E-05	-0.032788	-1.4091E-05	429.76324022713857	54.37	0.65164	54.354	54.03	54.681	-0.015923					55	22	3	0	0	0	0.10069	2	12890	12890;12945		60.39	9.5345	1	1316900			1126	3132	663	663	1307;1308	1307					0.07786713830898861
APARLFALL	9	Unmodified	_APARLFALL_					0	0	0		nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4	nc|ENSG00000124145|P31431-2|SDC4	nc|ENSG00000124145|P31431-2|SDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.3052978515625	2	486.30547	970.596387	0.22563	0.00010972	-0.59156	-0.00028768	-0.36593	-0.00017796	486.30518652995283	69.083	2.0016	69.083	67.997	69.999	0					171	73	5	0	0	0	0.051692	4	17404	17404;17448;17497;17544		52.268	22.044	1	10891000			1127	3132	664	664	1309;1310;1311;1312	1309					0.10991244927799926
APARLFALL	9	Unmodified	_APARLFALL_					0	0	0		nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4	nc|ENSG00000124145|P31431-2|SDC4	nc|ENSG00000124145|P31431-2|SDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.30560302734375	2	486.30547	970.596387	0.34118	0.00016592	-0.528	-0.00025677	-0.18682	-9.0854E-05	486.30524366570876	69.037	1.3816	69.109	68.618	69.999	0.071938					142	49	5	0	0	0	0.015402	4	17433	17385;17433;17481;17585		71.134	37.031	1	10203000			1128	3132	664	664	1313;1314;1315;1316	1314					0.10991244927799926
APARLFALL	9	Unmodified	_APARLFALL_					0	0	0		nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4	nc|ENSG00000124145|P31431-2|SDC4	nc|ENSG00000124145|P31431-2|SDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.3053894042969	2	486.30547	970.596387	0.26072	0.00012679	-0.49129	-0.00023892	-0.23057	-0.00011213	486.30520866622777	69.101	1.6378	69.082	68.223	69.861	-0.019157					138	58	5	0	0	0	0.027237	4	17406	17406;17452;17492;17539		61.357	27.255	1	10339000			1129	3132	664	664	1317;1318;1319;1320	1317					0.10991244927799926
APARPPSL	8	Unmodified	_APARPPSL_					0	0	0		ENST00000415061.7_1_19:55570578-55570638:-|nuORF	ENST00000415061.7_1_19:55570578-55570638:-|nuORF	ENST00000415061.7_1_19:55570578-55570638:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.853759765625	2	404.73742	807.460287	-0.42903	-0.00017365	1.0316	0.00041753	0.60256	0.00024388	404.7377375276992	28.294	0.64291	28.295	27.992	28.635	0.00046921					35	22	2	0	0	0	0.30795	1	4857	4857		30.637	0	1	273250			1130	10304	665	665	1321	1321					0.048855504171342545
APARPQPA	8	Unmodified	_APARPQPA_					0	0	0		ENST00000296351.8_1_3:196754712-196756638:-|nuORF;ADCY6|p.Y849Ffs*49|1|0.29|ENSG00000174233|chr12:48773544-48773544|T/-|frameshift_variant;nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6	ENST00000296351.8_1_3:196754712-196756638:-|nuORF	ENST00000296351.8_1_3:196754712-196756638:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.88311767578125	2	404.22722	806.439886	-0.12205	-4.9336E-05	0.87692	0.00035448	0.75487	0.00030514	404.2275978705885	17.223	1.0772	17.223	16.491	17.568	0					57	37	2	0	0	0	0.3366	1	1540	1540		18.135	1.1927	1	88173			1131	15	666	666	1322	1322					0.02892379757327035
APARPQPA	8	Unmodified	_APARPQPA_					0	0	0		ENST00000296351.8_1_3:196754712-196756638:-|nuORF;ADCY6|p.Y849Ffs*49|1|0.29|ENSG00000174233|chr12:48773544-48773544|T/-|frameshift_variant;nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6	ENST00000296351.8_1_3:196754712-196756638:-|nuORF	ENST00000296351.8_1_3:196754712-196756638:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	404.22722	806.439886	-0.36001	-0.00014553	1.2978	0.00052461	0.93779	0.00037908	404.22771973560293	17.433	1.3385	17.316	16.473	17.812	-0.11739	0.046629	0.00012818	NaN	18.135	64	47	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80954			1132	15	666	666							0.02892379757327035
APARPSPL	8	Unmodified	_APARPSPL_					0	0	0		ENST00000424774.1_1_1:16481746-16481983:+|nuORF	ENST00000424774.1_1_1:16481746-16481983:+|nuORF	ENST00000424774.1_1_1:16481746-16481983:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.8538513183594	2	404.73742	807.460287	-0.38672	-0.00015652	0.68508	0.00027728	0.29835	0.00012075	404.7376660677459	28.285	0.54216	28.285	28.036	28.578	0					34	18	2	0	0	0	0.31302	1	4900	4900		29.082	0	1	346050			1133	10401	667	667	1323	1323					0.048855504171342545
APASAFGSSL	10	Unmodified	_APASAFGSSL_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L;ENST00000585905.1_1_19:45898523-45909561:-|nuORF	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7923278808594	2	454.229625	906.444697	0.60825	0.00027629	-0.0089789	-4.0785E-06	0.59927	0.00027221	454.2294811840034	50.702	0.38323	50.702	50.489	50.872	0					17	13	2	0	0	0	0.2623	1	11793	11793		20.415	6.9067	1	129900			1134	1929	668	668	1324	1324					-0.012267808905676247
APASFGKSF	9	Unmodified	_APASFGKSF_					0	0	0		ENST00000528997.5_1_19:17530944-17531526:+|nuORF;ENST00000526234.1_1_19:17530944-17533268:+|nuORF;ENST00000528732.1_1_19:17530944-17531526:+|nuORF;nc|ENSG00000141971|Q96EY5-2|MVB12A;nc|ENSG00000141971|Q96EY5-3|MVB12A;ENSG00000141971|ENST00000317040|MVB12A	ENST00000528997.5_1_19:17530944-17531526:+|nuORF	ENST00000528997.5_1_19:17530944-17531526:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7933349609375	2	456.23471	910.454868	0.34355	0.00015674	-0.060912	-2.779E-05	0.28264	0.00012895	456.23444655539413	36.849	0.6454	36.849	36.562	37.207	0					26	22	2	0	0	0	0.16853	1	7500	7500		24.991	5.552	1	129320			1135	4417	669	669	1325	1325					-0.003941731653185343
APASFGKSF	9	Unmodified	_APASFGKSF_					0	0	0		ENST00000528997.5_1_19:17530944-17531526:+|nuORF;ENST00000526234.1_1_19:17530944-17533268:+|nuORF;ENST00000528732.1_1_19:17530944-17531526:+|nuORF;nc|ENSG00000141971|Q96EY5-2|MVB12A;nc|ENSG00000141971|Q96EY5-3|MVB12A;ENSG00000141971|ENST00000317040|MVB12A	ENST00000528997.5_1_19:17530944-17531526:+|nuORF	ENST00000528997.5_1_19:17530944-17531526:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.793212890625	2	456.23471	910.454868	0.27468	0.00012532	-0.42634	-0.00019451	-0.15166	-6.9194E-05	456.2345375073576	36.717	0.41352	36.805	36.566	36.98	0.087406					22	14	2	0	0	0	0.099099	1	7456	7456		47.594	15.289	1	131590			1136	4417	669	669	1326	1326					-0.003941731653185343
APASFGKSF	9	Unmodified	_APASFGKSF_					0	0	0		ENST00000528997.5_1_19:17530944-17531526:+|nuORF;ENST00000526234.1_1_19:17530944-17533268:+|nuORF;ENST00000528732.1_1_19:17530944-17531526:+|nuORF;nc|ENSG00000141971|Q96EY5-2|MVB12A;nc|ENSG00000141971|Q96EY5-3|MVB12A;ENSG00000141971|ENST00000317040|MVB12A	ENST00000528997.5_1_19:17530944-17531526:+|nuORF	ENST00000528997.5_1_19:17530944-17531526:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7932434082031	2	456.23471	910.454868	0.55613	0.00025372	-0.86523	-0.00039475	-0.30911	-0.00014102	456.2342548132651	36.723	0.34706	36.816	36.633	36.98	0.093014					22	12	2	0	0	0	0.20381	1	7460	7460		23.79	4.3508	1	140320			1137	4417	669	669	1327	1327					-0.003941731653185343
APASKWSAI	9	Unmodified	_APASKWSAI_					0	0	0			REV__nc|ENSG00000143149|P49189-2|ALDH9A1	REV__nc|ENSG00000143149|P49189-2|ALDH9A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2754211425781	2	465.75581	929.497067	-0.27562	-0.00012837	-3.9608	-0.0018447	-4.2364	-0.0019731	465.7560441629525	39.764	0.62183	39.764	39.54	40.161	0					45	22	3	0	0	0	0.21905	1	8407	8407		23.148	7.3012	1	301540	+		1138	16152	670	670	1328	1328					0.029498022430516357
APASKWSAI	9	Unmodified	_APASKWSAI_					0	0	0			REV__nc|ENSG00000143149|P49189-2|ALDH9A1	REV__nc|ENSG00000143149|P49189-2|ALDH9A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.27484130859375	2	465.75581	929.497067	0.17725	8.2556E-05	-4.0195	-0.0018721	-3.8423	-0.0017896	465.7558925570252	39.638	0.61027	39.737	39.452	40.062	0.099407					42	21	3	0	0	0	0.24311	1	8362	8362		11.64	0	1	432310	+		1139	16152	670	670	1329	1329					0.029498022430516357
APASRLLAL	9	Unmodified	_APASRLLAL_					0	0	0		nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8;ENST00000568689.5_1_16:733170-734340:-|nuORF;ENST00000565302.5_1_16:733531-734319:-|nuORF;ENST00000567120.5_1_16:734232-734409:-|nuORF;ENST00000569441.5_1_16:734052-734319:-|nuORF	nc|ENSG00000161999|Q96S16-2|JMJD8	nc|ENSG00000161999|Q96S16-2|JMJD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.287353515625	2	456.287277	910.560001	0.59648	0.00027217	-0.36231	-0.00016532	0.23417	0.00010685	456.2869918883002	50.154	0.75619	50.175	49.876	50.632	0.020691					42	27	3	0	0	0	0.075356	1	11627	11627		63.961	12.331	1	473630			1140	5541	671	671	1330	1330					0.10114368031076992
APASTPSRPP	10	Unmodified	_APASTPSRPP_					0	0	0			REV__ENST00000427004.5_1_6:33378256-33380059:+|nuORF	REV__ENST00000427004.5_1_6:33378256-33380059:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.302734375	2	490.761623	979.508694	0.24038	0.00011797	-3.5572	-0.0017457	-3.3168	-0.0016278	490.75945153391865	45.792	0.36812	45.851	45.647	46.015	0.059837					19	12	2	0	0	0	0.3156	1	10273	10273		10.824	1.4765	1	295680	+		1141	20909	672	672	1331	1331					0.01811999266374187
APASTRLFQV	10	Unmodified	_APASTRLFQV_					0	0	0		nc|ENSG00000148180|P06396|GSN;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;CON__Q3SX14;ENST00000373807.5_1_9:124074589-124093809:+|nuORF	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.27197265625	2	545.306198	1088.59784	0.5935	0.00032364	-0.37844	-0.00020637	0.21506	0.00011727	545.3059739529834	48.652	0.43467	48.652	48.448	48.883	0					23	15	2	0	0	0	0.26647	1	11135	11135		22.775	2.3213	1	336840		+	1142	12749	673	673	1332	1332					0.057088342259021374
APASTRLFQV	10	Unmodified	_APASTRLFQV_					0	0	0		nc|ENSG00000148180|P06396|GSN;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;CON__Q3SX14;ENST00000373807.5_1_9:124074589-124093809:+|nuORF	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2723388671875	2	545.306198	1088.59784	0.84469	0.00046061	-0.33101	-0.0001805	0.51368	0.00028011	545.3058293913035	48.721	0.35953	48.766	48.546	48.906	0.044888					18	12	2	0	0	0	0.24999	1	11176	11176		32.898	15.785	1	394360		+	1143	12749	673	673	1333	1333					0.057088342259021374
APASTRLFQV	10	Unmodified	_APASTRLFQV_					0	0	0		nc|ENSG00000148180|P06396|GSN;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;CON__Q3SX14;ENST00000373807.5_1_9:124074589-124093809:+|nuORF	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2720947265625	2	545.306198	1088.59784	0.71674	0.00039084	-1.2992	-0.00070844	-0.58243	-0.0003176	545.3053447390931	48.548	0.41444	48.58	48.359	48.774	0.032043					21	14	2	0	0	0	0.23252	1	11146	11146		37.771	22.933	1	306600		+	1144	12749	673	673	1334	1334					0.057088342259021374
APASVRDDPRH	11	Unmodified	_APASVRDDPRH_					0	0	0		ENSG00000204532|ENST00000534327|ZSCAN5C	ENSG00000204532|ENST00000534327|ZSCAN5C	ENSG00000204532|ENST00000534327|ZSCAN5C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.2325439453125	3	407.542537	1219.60578	-0.33224	-0.0001354	-3.0558	-0.0012454	-3.388	-0.0013808	407.54105947302355	12.962	0.16736	12.863	12.757	12.924	-0.099291					8	5	2	0	0	0	0.33287	1	299	299		2.8433	0.75728	1	10189			1145	8235	674	674	1335	1335					0.004763614753755974
APATVGLAF	9	Unmodified	_APATVGLAF_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.7397766113281	2	423.739628	845.464704	0.055368	2.3461E-05	-0.12864	-5.4509E-05	-0.07327	-3.1048E-05	423.73949852795886	63.603	0.82015	63.603	63.285	64.105	0					46	29	2	0	0	0	0.048175	1	15782	15782		53.576	13.127	1	423180			1146	1832	675	675	1336	1336					0.03579014840045147
APATVGLAF	9	Unmodified	_APATVGLAF_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.73944091796875	2	423.739628	845.464704	0.047791	2.0251E-05	-0.20866	-8.8419E-05	-0.16087	-6.8168E-05	423.73944126266395	63.47	0.65056	63.566	63.311	63.961	0.095722					44	22	3	0	0	0	0.048175	1	15729	15729		53.576	21.459	1	400080			1147	1832	675	675	1337	1337					0.03579014840045147
APATVGLAF	9	Unmodified	_APATVGLAF_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.73956298828125	2	423.739628	845.464704	0.14347	6.0794E-05	-0.18336	-7.7696E-05	-0.039887	-1.6902E-05	423.7394831753196	63.607	0.72172	63.599	63.242	63.963	-0.0085526					45	25	2	0	0	0	0.029841	2	15724	15724;15780		60.39	19.941	1	363690			1148	1832	675	675	1338;1339	1338					0.03579014840045147
APAYLPRSL	9	Unmodified	_APAYLPRSL_					0	0	0		nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97;ENST00000489172.5_1_3:101443520-101477325:+|nuORF	nc|ENSG00000182504|Q8IW35-2|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2954406738281	2	494.284734	986.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.115	1	48.158	47.658	48.658	0.04332								0	0	0	0.15548	1	10974	10974		33.445	1.1394	1				1149	7296	676	676	1340	1340					0.0611006416845612
APAYSRAL	8	Unmodified	_APAYSRAL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8872985839844	2	424.734877	847.455202	0.11367	4.8281E-05	-1.0122	-0.00042991	-0.8985	-0.00038163	424.73477331256055	29.658	0.52911	29.658	29.441	29.97	0					28	18	2	0	0	0	0.30241	1	5340	5340		25.399	2.2509	1	175890			1150	2061	677	677	1341	1341					0.025372465545160594
APAYSRAL	8	Unmodified	_APAYSRAL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.8873291015625	2	424.734877	847.455202	-0.059343	-2.5205E-05	-0.77144	-0.00032766	-0.83078	-0.00035286	424.73483889086765	29.63	0.52815	29.642	29.389	29.917	0.012266					32	17	3	0	0	0	0.26342	1	5317	5317		47.749	17.112	1	231010			1151	2061	677	677	1342	1342					0.025372465545160594
APAYSRAL	8	Unmodified	_APAYSRAL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.8872985839844	2	424.734877	847.455202	-0.25539	-0.00010847	-0.30658	-0.00013021	-0.56197	-0.00023869	424.73493415199323	29.638	0.55074	29.651	29.454	30.005	0.013475					33	18	3	0	0	0	0.28088	1	5351	5351		39.957	1.8061	1	263210			1152	2061	677	677	1343	1343					0.025372465545160594
APCRCPFPRSS	11	Unmodified	_APCRCPFPRSS_					0	0	0			REV__ENST00000268220.11_1_15:85234789-85259418:-|nuORF	REV__ENST00000268220.11_1_15:85234789-85259418:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.2325439453125	3	407.526954	1219.55903	-0.3382	-0.00013783	2.0583	0.00083882	1.7201	0.00070099	407.52794544673367	13.064	0.25642	12.965	12.785	13.042	-0.099291					11	8	2	0	0	0	0.33255	1	299	299		1.2148	0.4383	1	17988	+		1153	19664	678	678	1344	1344					-0.041965376717826075
APDISVKGP	9	Unmodified	_APDISVKGP_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.25042724609375	2	442.247818	882.481082	0.12108	5.355E-05	0.5567	0.0002462	0.67779	0.00029975	442.24830048698885	24.23	0.47885	24.158	23.935	24.414	-0.072559					27	15	2	0	0	0	0.20626	1	3690	3690		22.736	4.5899	1	99734			1154	3189	679	679	1345	1345					0.035140960061426085
APDSQRLKL	9	Unmodified	_APDSQRLKL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2977294921875	2	514.298373	1026.58219	0.11744	6.0397E-05	-0.38214	-0.00019654	-0.26471	-0.00013614	514.2980843488386	27.489	0.66306	27.489	27.207	27.87	0					38	22	2	0	0	0	0.17555	1	4694	4694		27.223	9.0769	1	280000			1155	2162	680	680	1346	1346					0.0699654770885445
APDSQRLKL	9	Unmodified	_APDSQRLKL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2529907226562	2	514.298373	1026.58219	-0.061063	-3.1405E-05	-0.49385	-0.00025399	-0.55491	-0.00028539	514.2980727901266	27.512	0.73596	27.5	27.187	27.923	-0.01156					45	25	3	0	0	0	0.1303	1	4657	4657		49.527	20.446	1	279420			1156	2162	680	680	1347	1347					0.0699654770885445
APDVARALL	9	Unmodified	_APDVARALL_					0	0	0		nc|ENSG00000188157|O00468-2|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN	nc|ENSG00000188157|O00468-2|AGRN	nc|ENSG00000188157|O00468-2|AGRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.2770690917969	2	463.276909	924.539266	-0.010957	-5.0761E-06	0.17199	7.9679E-05	0.16103	7.4603E-05	463.2770368918351	49.97	0.64102	49.97	49.626	50.267	0					45	23	3	0	0	0	0.1645	1	11529	11529		40.239	14.84	1	693770			1157	7732	681	681	1348	1348					0.07397777651419801
APDVARALL	9	Unmodified	_APDVARALL_					0	0	0		nc|ENSG00000188157|O00468-2|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN	nc|ENSG00000188157|O00468-2|AGRN	nc|ENSG00000188157|O00468-2|AGRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.27685546875	2	463.276909	924.539266	0.21629	0.0001002	0.15493	7.1776E-05	0.37122	0.00017198	463.2769224089674	49.912	0.57132	49.957	49.721	50.292	0.044891					52	21	4	0	0	0	0.026579	1	11529	11529		61.602	28.816	1	750780			1158	7732	681	681	1349	1349					0.07397777651419801
APDVARALL	9	Unmodified	_APDVARALL_					0	0	0		nc|ENSG00000188157|O00468-2|AGRN;ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN	nc|ENSG00000188157|O00468-2|AGRN	nc|ENSG00000188157|O00468-2|AGRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.2774353027344	2	463.276909	924.539266	0.36455	0.00016889	-0.094473	-4.3767E-05	0.27008	0.00012512	463.2768697698703	49.901	0.63927	49.921	49.67	50.309	0.020691					53	23	3	0	0	0	0.1645	1	11521	11521		40.239	14.84	1	616130			1159	7732	681	681	1350	1350					0.07397777651419801
APEEAGLHV	9	Unmodified	_APEEAGLHV_					0	0	0			REV__ENST00000578361.5_1_17:79969964-79975195:+|nuORF	REV__ENST00000578361.5_1_17:79969964-79975195:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.2633056640625	2	461.735074	921.455596	0.31977	0.00014765	-0.54129	-0.00024993	-0.22152	-0.00010228	461.7350140757988	40.412	0.40657	40.512	40.288	40.694	0.099403					18	14	2	0	0	0	0.24311	1	8552	8552		11.64	6.8843	1	108450	+		1160	17533	682	682	1351	1351					-0.008273785162828062
APEEHPVL	8	Unmodified	_APEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	446.2320861816406	2	446.232168	890.449782	0.21693	9.6803E-05	-0.38848	-0.00017335	-0.17155	-7.6551E-05	446.2319205670025	29.686	1.1756	29.698	29.331	30.507	0.012266					115	40	5	0	0	0	8.852E-06	2	5315	5315;5360		161.58	83.137	1	2199600			1161	1050	683	683	1352;1353	1352					0.0001752297204120623
APEEHPVL	8	Unmodified	_APEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.2320251464844	2	446.232168	890.449782	0.034809	1.5533E-05	-0.17479	-7.7999E-05	-0.13999	-6.2466E-05	446.232026638001	29.675	0.93584	29.689	29.359	30.295	0.013474					98	31	4	0	0	0	8.852E-06	2	5363	5320;5363		161.58	83.137	1	2296500			1162	1050	683	683	1354;1355	1355					0.0001752297204120623
APEEHPVL	8	Unmodified	_APEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	446.232168	890.449782	0.41245	0.00018405	-0.57383	-0.00025606	-0.16139	-7.2016E-05	446.2318600501336	29.719	1.0335	29.719	29.385	30.418	0	0.016891	-0.00018302	NaN	161.58	99	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2298200			1163	1050	683	683							0.0001752297204120623
APEEHPVLL	9	Unmodified	_APEEHPVLL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.77435302734375	2	502.7742	1003.53385	0.060241	3.0288E-05	0.475	0.00023882	0.53524	0.00026911	502.77432985799277	42.537	0.73123	42.537	42.251	42.982	0					68	26	4	0	0	0	0.065123	1	9264	9264		64.236	35.749	1	669430			1164	1050	684	684	1356	1356					0.032220540689422705
APEEHPVLL	9	Unmodified	_APEEHPVLL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7743835449219	2	502.7742	1003.53385	0.27944	0.0001405	0.20871	0.00010494	0.48816	0.00024543	502.77422775500315	42.391	0.91262	42.477	42.063	42.975	0.085197					67	32	4	0	0	0	0.018829	1	9235	9235		81.613	43.639	1	923200			1165	1050	684	684	1357	1357					0.032220540689422705
APEEHPVLL	9	Unmodified	_APEEHPVLL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.77435302734375	2	502.7742	1003.53385	0.36252	0.00018227	-0.10749	-5.4041E-05	0.25504	0.00012823	502.77418059332706	42.326	0.70996	42.417	42.007	42.717	0.091362					53	24	3	0	0	0	0.0088261	1	9200	9200		85.357	43.262	1	811550			1166	1050	684	684	1358	1358					0.032220540689422705
APEERPAAL	9	Unmodified	_APEERPAAL_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.25665283203125	2	477.256174	952.497795	-0.18253	-8.7114E-05	0.21596	0.00010307	0.033428	1.5953E-05	477.2562145614134	27.902	0.63441	27.902	27.643	28.277	0					48	21	3	0	0	0	0.015924	2	4772	4772;4821		70.332	37.546	1	473570			1167	2318	685	685	1359;1360	1359					0.01964596892071313
APEERPAAL	9	Unmodified	_APEERPAAL_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.2559509277344	2	477.256174	952.497795	-0.092824	-4.4301E-05	0.18421	8.7915E-05	0.091385	4.3614E-05	477.25616125158535	27.9	0.67372	27.895	27.632	28.306	-0.0042572					50	23	3	0	0	0	0.015924	2	4779	4779;4830		70.332	37.546	1	513310			1168	2318	685	685	1361;1362	1361					0.01964596892071313
APEERPAAL	9	Unmodified	_APEERPAAL_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.256103515625	2	477.256174	952.497795	-0.16976	-8.1021E-05	0.4055	0.00019353	0.23574	0.00011251	477.25626168134755	27.871	0.67209	27.872	27.596	28.268	0.0004673					57	23	4	0	0	0	0.0098873	3	4753	4753;4804;4859		79.596	39.647	1	476090			1169	2318	685	685	1363;1364;1365	1363					0.01964596892071313
APEFRRLGL	9	Unmodified	_APEFRRLGL_					0	0	0		ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20	ENSG00000173418|ENST00000334982|NAA20	ENSG00000173418|ENST00000334982|NAA20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.80908203125	2	529.808908	1057.60326	0.48769	0.00025838	-0.13442	-7.1219E-05	0.35327	0.00018716	529.808842438267	43.097	1.0888	43.097	42.76	43.849	0					110	39	4	0	0	0	0.0016361	4	9417	9389;9417;9469;9519		114.65	50.413	1	6103100			1170	6721	686	686	1366;1367;1368;1369	1367					0.07676557808372309
APEFRRLGL	9	Unmodified	_APEFRRLGL_					0	0	0		ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20	ENSG00000173418|ENST00000334982|NAA20	ENSG00000173418|ENST00000334982|NAA20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.80908203125	2	529.808908	1057.60326	0.31356	0.00016613	-0.10602	-5.6173E-05	0.20753	0.00010995	529.8088079342601	42.761	0.95758	42.846	42.565	43.522	0.085201					98	34	4	0	0	0	0.0016361	3	9352	9303;9352;9395		114.65	40.226	1	6088400			1171	6721	686	686	1370;1371;1372	1371					0.07676557808372309
APEFRRLGL	9	Unmodified	_APEFRRLGL_					0	0	0		ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20	ENSG00000173418|ENST00000334982|NAA20	ENSG00000173418|ENST00000334982|NAA20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.8090209960938	2	529.808908	1057.60326	0.2918	0.0001546	-0.083883	-4.4442E-05	0.20792	0.00011016	529.808849868019	42.712	1.0873	42.804	42.47	43.557	0.091362					118	39	5	0	0	0	0.0028626	3	9313	9268;9313;9361		103.35	41.337	1	5940300			1172	6721	686	686	1373;1374;1375	1374					0.07676557808372309
APEGARAAL	9	Unmodified	_APEGARAAL_					0	0	0			REV__ENST00000532344.1_1_11:6632867-6633324:-|nuORF	REV__ENST00000532344.1_1_11:6632867-6633324:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.23773193359375	2	428.237784	854.461016	-0.11941	-5.1137E-05	0.43609	0.00018675	0.31668	0.00013561	428.2378842175349	22.179	0.96297	22.079	21.682	22.645	-0.10034					57	34	2	0	0	0	0.14786	1	3081	3081		31.268	1.4278	1	600760	+		1173	17309	687	687	1376	1376					0.027963450661786737
APEGARAAL	9	Unmodified	_APEGARAAL_					0	0	0			REV__ENST00000532344.1_1_11:6632867-6633324:-|nuORF	REV__ENST00000532344.1_1_11:6632867-6633324:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	428.237784	854.461016	-0.15376	-6.5844E-05	0.43662	0.00018698	0.28286	0.00012113	428.23789005429654	22.062	0.88319	22.062	21.68	22.563	0	-0.029231	-4.3476E-05	NaN	31.268	59	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	589360	+		1174	17309	687	687							0.027963450661786737
APEGARAAL	9	Unmodified	_APEGARAAL_					0	0	0			REV__ENST00000532344.1_1_11:6632867-6633324:-|nuORF	REV__ENST00000532344.1_1_11:6632867-6633324:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	428.237784	854.461016	-0.11941	-5.1137E-05	0.43609	0.00018675	0.31668	0.00013561	428.2378842175349	22.179	0.96297	22.079	21.682	22.645	-0.10034	-0.012361	-4.3923E-05	NaN	31.268	57	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	600760	+		1175	17309	687	687							0.027963450661786737
APEGARAAL	9	Unmodified	_APEGARAAL_					0	0	0			REV__ENST00000532344.1_1_11:6632867-6633324:-|nuORF	REV__ENST00000532344.1_1_11:6632867-6633324:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	428.237784	854.461016	-0.21431	-9.1778E-05	0.57668	0.00024696	0.36236	0.00015518	428.2379508087411	22.182	1.0679	22.133	21.717	22.785	-0.049377	0.041592	7.6484E-05	NaN	31.268	62	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	615070	+		1176	17309	687	687							0.027963450661786737
APELIKAC	8	Unmodified	_APELIKAC_					0	0	0		HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|411|3|anti-sense;HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|411|3|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|411|3|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|411|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.2750549316406	2	422.733489	843.452425	0.08947	3.7822E-05	-2.8082	-0.0011871	-2.7187	-0.0011493	422.73163487787195	79.287	1.8981	79.349	78.229	80.127	0.061417					101	76	2	0	0	0	0.33293	1	20215	20215		20.454	7.9221	1	304510			1177	12413	688	688	1377	1377					0.02443655105344078
APELIKAC	8	Unmodified	_APELIKAC_					0	0	0		HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|411|3|anti-sense;HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|411|3|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|411|3|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|411|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.2750244140625	2	422.733489	843.452425	0.19826	8.381E-05	-2.8168	-0.0011908	-2.6186	-0.001107	422.7315857647607	79.415	1.8299	79.386	78.372	80.202	-0.028931					94	71	2	0	0	0	0.3408	1	20283	20283		14.838	10.082	1	357150			1178	12413	688	688	1378	1378					0.02443655105344078
APELLRALL	9	Unmodified	_APELLRALL_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3161926269531	2	498.316035	994.617516	0.29019	0.0001446	0.30386	0.00015142	0.59405	0.00029602	498.3159637209351	69.827	1.1122	69.827	69.428	70.54	0					105	40	4	0	0	0	0.0013683	3	17676	17632;17676;17727		118.07	48.963	1	1429600			1179	1079	689	689	1379;1380;1381	1380					0.11999210236660929
APELLRALL	9	Unmodified	_APELLRALL_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3160095214844	2	498.316035	994.617516	0.26776	0.00013343	0.29432	0.00014666	0.56208	0.00028009	498.315957128097	69.805	1.207	69.871	69.428	70.635	0.06604					83	42	3	0	0	0	0.0024096	3	17663	17615;17663;17710		106.94	53.107	1	1329200			1180	1079	689	689	1382;1383;1384	1383					0.11999210236660929
APELLRALL	9	Unmodified	_APELLRALL_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.3160400390625	2	498.316035	994.617516	0.30661	0.00015279	0.67589	0.00033681	0.98251	0.0004896	498.3159529083208	69.895	0.92143	69.873	69.489	70.41	-0.022087					93	33	5	0	0	0	0.011693	3	17638	17638;17688;17738		76.825	33.052	1	1226800			1181	1079	689	689	1385;1386;1387	1385					0.11999210236660929
APEPKRPHI	9	Unmodified	_APEPKRPHI_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2669067382812	2	522.801083	1043.58761	0.25269	0.00013211	0.080195	4.1926E-05	0.33288	0.00017403	522.8016062014526	19.189	0.4831	19.189	18.978	19.461	0					35	16	3	0	0	0	0.25431	1	2131	2131		9.3831	2.66	1	97310			1182	7076	690	690	1388	1388					0.06756271291305893
APEREEERW	9	Unmodified	_APEREEERW_					0	0	0			REV__ENST00000523102.5_1_12:6980128-6980251:-|nuORF	REV__ENST00000523102.5_1_12:6980128-6980251:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.3225708007812	2	601.283451	1200.55235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.32	1	96.32	95.82	96.82	0								0	0	0	0.26513	1	25731	25731		1.4819	0.28856	1		+		1183	21924	691	691	1389	1389					-0.039904360271521
APEREEERW	9	Unmodified	_APEREEERW_					0	0	0			REV__ENST00000523102.5_1_12:6980128-6980251:-|nuORF	REV__ENST00000523102.5_1_12:6980128-6980251:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.2840576171875	2	601.283451	1200.55235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.801	1	96.872	96.372	97.372	0.070465								0	0	0	0.25858	1	25886	25886		3.5965	1.7523	1		+		1184	21924	691	691	1390	1390					-0.039904360271521
APERPSPLLLT	11	Unmodified	_APERPSPLLLT_					0	0	0			REV__ENSG00000185823|ENST00000329468|NPAP1	REV__ENSG00000185823|ENST00000329468|NPAP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3467407226562	2	597.348063	1192.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.296	1	91.296	90.796	91.796	0								0	0	0	0.32888	1	24238	24238		12.873	3.3286	1		+		1185	18411	692	692	1391	1391					0.09293945602939857
APERPSPLLLT	11	Unmodified	_APERPSPLLLT_					0	0	0			REV__ENSG00000185823|ENST00000329468|NPAP1	REV__ENSG00000185823|ENST00000329468|NPAP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.3475341796875	2	597.348063	1192.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.086	1	91.086	90.586	91.586	0.00046539								0	0	0	0.34403	1	24161	24161		9.544	4.2471	1		+		1186	18411	692	692	1392	1392					0.09293945602939857
APFDREPFTL	10	Unmodified	_APFDREPFTL_					0	0	0		ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.8041381835938	2	596.803488	1191.59242	0.55061	0.00032861	-0.24299	-0.00014502	0.30762	0.00018359	596.8032647819123	63.546	0.5217	63.546	63.225	63.746	0					50	18	3	0	0	0	0.0050981	2	15712	15712;15764		91.085	62.003	1	599030			1187	618	693	693	1393;1394	1393					0.004291106434266112
APFDREPFTL	10	Unmodified	_APFDREPFTL_					0	0	0		ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.8037109375	2	596.803488	1191.59242	0.59875	0.00035733	-0.1476	-8.8087E-05	0.45115	0.00026925	596.8032721009105	63.317	0.58545	63.413	63.096	63.681	0.095726					43	20	3	0	0	0	0.018653	2	15668	15668;15716		73.196	48.205	1	582950			1188	618	693	693	1395;1396	1395					0.004291106434266112
APFDREPFTL	10	Unmodified	_APFDREPFTL_					0	0	0		ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.8030395507812	2	596.803488	1191.59242	0.53916	0.00032177	-0.54886	-0.00032756	-0.0096948	-5.7859E-06	596.8031265284096	63.502	0.61049	63.493	63.136	63.746	-0.0085526					47	21	3	0	0	0	0.010655	2	15721	15721;15783		81.915	62.553	1	530960			1189	618	693	693	1397;1398	1397					0.004291106434266112
APFDRRATSL	10	Unmodified	_APFDRRATSL_					0	0	0		nc|ENSG00000134574|Q92466-3|DDB2;nc|ENSG00000134574|Q92466-2|DDB2;nc|ENSG00000134574|Q92466-5|DDB2;ENSG00000134574|ENST00000256996|DDB2	nc|ENSG00000134574|Q92466-3|DDB2	nc|ENSG00000134574|Q92466-3|DDB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3065185546875	2	567.306729	1132.59891	0.29021	0.00016464	-0.65075	-0.00036917	-0.36054	-0.00020454	567.3062618251976	32.268	1.1517	32.322	31.994	33.146	0.054375					98	41	4	0	0	0	0.0057088	1	6135	6135		114.19	68.487	1	2044500			1190	3797	694	694	1399	1399					0.03791048594803215
APFEPLASGIL	11	Unmodified	_APFEPLASGIL_					0	0	0		ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8110961914062	2	557.810782	1113.60701	0.4178	0.00023305	0.16397	9.1465E-05	0.58177	0.00032452	557.8108369371928	82.409	1.2169	82.409	82.081	83.298	0					128	45	5	0	0	0	1.2254E-05	4	21518	21468;21518;21566;21610		122.18	76.158	1	6035600			1191	1758	695	695	1400;1401;1402;1403	1401					0.0547518279158794
APFEPLASGIL	11	Unmodified	_APFEPLASGIL_					0	0	0		ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.81103515625	2	557.810782	1113.60701	0.32199	0.00017961	0.21608	0.00012053	0.53806	0.00030014	557.810862509344	82.325	1.1662	82.398	82.073	83.239	0.073097					149	46	5	0	0	0	2.0254E-05	4	21478	21431;21478;21527;21578		114.65	68.628	1	7904100			1192	1758	695	695	1404;1405;1406;1407	1405					0.0547518279158794
APFEPLASGIL	11	Unmodified	_APFEPLASGIL_					0	0	0		ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.8110961914062	2	557.810782	1113.60701	0.36019	0.00020092	0.21135	0.00011789	0.57155	0.00031881	557.8108498707724	82.481	1.1975	82.46	82.113	83.311	-0.020584					152	47	5	0	0	0	1.7064E-08	5	21503	21455;21503;21549;21597;21644		134.3	79.522	1	7408400			1193	1758	695	695	1408;1409;1410;1411;1412	1409					0.0547518279158794
APFEQRASL	9	Unmodified	_APFEQRASL_					0	0	0		ENSG00000180818|ENST00000303460|HOXC10	ENSG00000180818|ENST00000303460|HOXC10	ENSG00000180818|ENST00000303460|HOXC10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2978515625	2	509.769448	1017.52434	0.39855	0.00020317	0.094272	4.8057E-05	0.49282	0.00025123	509.7695878202893	40.193	0.6036	40.292	40.038	40.641	0.099403					61	21	4	0	0	0	0.24993	1	8636	8636		8.7454	8.7454	1	1267100			1194	7205	696	696	1413	1413					0.01628285783431238
APFHSHEL	8	Unmodified	_APFHSHEL_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.9205322265625	2	469.229959	936.445365	0.1596	7.489E-05	-0.69122	-0.00032434	-0.53162	-0.00024945	469.2294345147512	23.237	0.46008	23.192	22.898	23.358	-0.044867					25	16	2	0	0	0	0.34167	1	3362	3362		11.64	3.7301	1	107400			1195	3953	697	697	1414	1414					-0.025399414508569862
APFHSHEL	8	Unmodified	_APFHSHEL_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	469.229959	936.445365	-0.08322	-3.9049E-05	-0.66815	-0.00031352	-0.75137	-0.00035257	469.22944750276247	23.159	0.49976	23.072	22.853	23.353	-0.087608	-0.038316	2.6138E-05	NaN	11.64	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111330			1196	3953	697	697							-0.025399414508569862
APFKFDMEL	9	Oxidation (M)	_APFKFDM(Oxidation (M))EL_		APFKFDM(1)EL		APFKFDM(110)EL	0	0	1		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2678833007812	2	557.267893	1112.52123	0.40452	0.00022543	-1.0612	-0.00059138	-0.65669	-0.00036595	557.2673171628151	56.92	0.4556	56.92	56.686	57.141	0					43	16	3	0	0	0	0.0016712	1	13672	13672		114.2	72.107	1	763510			1197	1520	698	698	1415	1415		189			-0.03052725385600752
APFKFDMEL	9	Oxidation (M)	_APFKFDM(Oxidation (M))EL_		APFKFDM(1)EL		APFKFDM(110)EL	0	0	1		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2679443359375	2	557.267893	1112.52123	0.45684	0.00025458	-0.9744	-0.000543	-0.51756	-0.00028842	557.267191965677	56.73	0.54898	56.808	56.628	57.177	0.078671					44	20	3	0	0	0	0.0016712	1	13633	13633		114.2	72.107	1	811460			1198	1520	698	698	1416	1416		189			-0.03052725385600752
APFKFDMEL	9	Oxidation (M)	_APFKFDM(Oxidation (M))EL_		APFKFDM(1)EL		APFKFDM(65)EL	0	0	1		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2676391601562	2	557.267893	1112.52123	0.74076	0.0004128	-0.92263	-0.00051415	-0.18187	-0.00010135	557.2672948925103	56.387	0.45757	56.466	56.247	56.704	0.078674					34	16	3	0	0	0	0.027994	1	13549	13549		65.474	50.635	1	813140			1199	1520	698	698	1417	1417		189			-0.03052725385600752
APFKFDMEL	9	Oxidation (M)	_APFKFDM(Oxidation (M))EL_		APFKFDM(1)EL		APFKFDM(68)EL	0	0	1		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2675170898438	2	557.267893	1112.52123	0.9093	0.00050672	-1.6448	-0.00091659	-0.7355	-0.00040987	557.2668697947737	56.628	0.38238	56.609	56.456	56.838	-0.019077					33	13	3	0	0	0	0.017549	1	13625	13625		67.838	40.955	1	889830			1200	1520	698	698	1418	1418		189			-0.03052725385600752
APFKFDMEL	9	Oxidation (M)	_APFKFDM(Oxidation (M))EL_		APFKFDM(1)EL		APFKFDM(86)EL	0	0	1		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;ENST00000491588.1_1_22:22123495-22123630:-|nuORF	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2679443359375	2	557.267893	1112.52123	0.3996	0.00022268	-0.57288	-0.00031925	-0.17328	-9.6564E-05	557.2674885567129	57.027	0.448	57.008	56.809	57.257	-0.019077					35	15	3	0	0	0	0.0054984	1	13710	13710		86.332	57.845	1	957850			1201	1520	698	698	1419	1419		189			-0.03052725385600752
APFLRIAF	8	Unmodified	_APFLRIAF_					0	0	0		ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7795715332031	2	467.779088	933.543623	0.072604	3.3962E-05	0.41623	0.0001947	0.48884	0.00022867	467.7792696964961	68.623	1.0714	68.695	68.33	69.401	0.071938					63	39	3	0	0	0	0.026049	1	17300	17300		93.883	53.435	1	433980			1202	5759	699	699	1420	1420					0.07419286864967489
APFLRIAF	8	Unmodified	_APFLRIAF_					0	0	0		ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7790832519531	2	467.779088	933.543623	0.26044	0.00012183	0.083943	3.9267E-05	0.34439	0.0001611	467.7790034449132	68.683	0.51906	68.664	68.484	69.003	-0.01915					39	18	3	0	0	0	0.051678	1	17308	17308		93.883	53.435	1	409050			1203	5759	699	699	1421	1421					0.07419286864967489
APFLRIAF	8	Unmodified	_APFLRIAF_					0	0	0		ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	467.779088	933.543623	0.10028	4.6909E-05	0.23269	0.00010885	0.33297	0.00015576	467.7791482081595	68.638	1.0659	68.638	68.303	69.369	0	-0.027866	-5.5505E-05	NaN	93.883	53	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390710			1204	5759	699	699							0.07419286864967489
APFLRNVEL	9	Unmodified	_APFLRNVEL_					0	0	0		CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.8035278320312	2	529.803291	1057.59203	0.52728	0.00027935	0.065284	3.4588E-05	0.59256	0.00031394	529.8034410287281	57.656	2.3392	57.656	56.823	59.162	0					157	83	5	0	0	0	0.0019475	3	13928	13877;13928;13979		110.67	54.498	1	24063000			1205	188	700	700	1422;1423;1424	1423					0.06553735714237519
APFLRNVEL	9	Unmodified	_APFLRNVEL_					0	0	0		CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.8036499023438	2	529.803291	1057.59203	0.42504	0.00022519	0.18249	9.6686E-05	0.60753	0.00032187	529.803530904194	57.47	1.639	57.556	56.942	58.581	0.085621					129	59	5	0	0	0	0.0016712	3	13876	13829;13876;13921		114.2	58.025	1	24056000			1206	188	700	700	1425;1426;1427	1426					0.06553735714237519
APFLRNVEL	9	Unmodified	_APFLRNVEL_					0	0	0		CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.803466796875	2	529.803291	1057.59203	0.38444	0.00020368	0.25419	0.00013467	0.63863	0.00033835	529.8035323855883	57.705	1.7588	57.688	56.894	58.653	-0.0172					140	64	5	0	0	0	0.0019475	4	13934	13885;13934;13984;14195		110.67	54.498	1	22357000			1207	188	700	700	1428;1429;1430;1431	1429					0.06553735714237519
APFLSRTLL	9	Unmodified	_APFLSRTLL_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.H1830Lfs*7|1|0.13|ENSG00000198589|chr4:150806300-150806300|T/-|frameshift_variant;ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA	nc|ENSG00000198589|P50851-2|LRBA;ENSG00000172915|ENST00000379939|NBEA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7977600097656	2	509.30821	1016.60187	-0.11489	-5.8515E-05	0.4635	0.00023607	0.34861	0.00017755	509.30813815241186	60.2	0.3532	60.2	60.006	60.359	0					17	12	2	0	0	0	0.22674	1	14724	14724		17.113	0	1	303820			1208	8091;6673	701	701	1432	1432					0.09422923719614573
APFLSRTLL	9	Unmodified	_APFLSRTLL_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.H1830Lfs*7|1|0.13|ENSG00000198589|chr4:150806300-150806300|T/-|frameshift_variant;ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA	nc|ENSG00000198589|P50851-2|LRBA;ENSG00000172915|ENST00000379939|NBEA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7978515625	2	509.30821	1016.60187	-0.47799	-0.00024344	0.79268	0.00040372	0.3147	0.00016028	509.3086250815346	60.012	0.32283	60.107	60.019	60.341	0.095093					17	11	2	0	0	0	0.22674	1	14685	14685		17.113	0	1	289630			1209	8091;6673	701	701	1433	1433					0.09422923719614573
APFLTLQL	8	Unmodified	_APFLTLQL_					0	0	0		CAMLG|p.A223V|1|0.13|ENSG00000164615|chr5:134744021-134744021|C/T|missense_variant;ENSG00000164615|ENST00000297156|CAMLG	CAMLG|p.A223V|1|0.13|ENSG00000164615|chr5:134744021-134744021|C/T|missense_variant	CAMLG|p.A223V|1|0.13|ENSG00000164615|chr5:134744021-134744021|C/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7708435058594	2	451.770929	901.527304	0.34958	0.00015793	-0.29357	-0.00013263	0.056003	2.53E-05	451.7707685500365	83.656	0.65109	83.733	83.274	83.925	0.077095					42	25	2	0	0	0	0.27124	1	21890	21890		34.102	5.6156	1	193420			1210	87	702	702	1434	1434					0.07260160908231228
APFSKVLTF	9	Unmodified	_APFSKVLTF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1	ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2895202636719	2	505.289485	1008.56442	0.10931	5.5235E-05	0.27092	0.00013689	0.38023	0.00019213	505.289537667414	59.649	0.96034	59.649	59.215	60.175	0					62	33	3	0	0	0	0.0028032	1	14530	14530		103.82	0	1	1355800			1211	6468;12680	703	703	1435	1435					0.06047832453987212
APFSKVLTF	9	Unmodified	_APFSKVLTF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1	ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1	ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7718200683594	2	505.289485	1008.56442	0.22473	0.00011355	-0.078211	-3.9519E-05	0.14652	7.4035E-05	505.2894398241939	61.958	0.61751	61.958	61.623	62.24	0					35	22	2	0	0	0	0.24289	1	15177	15177		18.146	0	1	378100			1212	6468;12680	703	703	1436	1436					0.06047832453987212
APFSKVLTF	9	Unmodified	_APFSKVLTF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1	ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2894287109375	2	505.289485	1008.56442	0.13805	6.9755E-05	0.13709	6.927E-05	0.27514	0.00013903	505.2895058216807	59.495	0.69501	59.59	59.266	59.961	0.095093					60	24	3	0	0	0	0.0013924	1	14485	14485		117.76	0	1	1281700			1213	6468;12680	703	703	1437	1437					0.06047832453987212
APFSKVLTF	9	Unmodified	_APFSKVLTF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1	ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2897644042969	2	505.289485	1008.56442	0.40928	0.00020681	0.16046	8.1079E-05	0.56974	0.00028789	505.28949517863884	59.634	0.71539	59.622	59.225	59.94	-0.011486					56	24	3	0	0	0	0.003673	2	14511	14511;14563		96.936	0	1	1231500			1214	6468;12680	703	703	1438;1439	1438					0.06047832453987212
APFSKVLTF	9	Unmodified	_APFSKVLTF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1	ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	505.289485	1008.56442	-0.13318	-6.7293E-05	0.36937	0.00018664	0.23619	0.00011935	505.2896671568615	61.803	0.55449	61.9	61.566	62.12	0.096985	-0.010739	0.00043003	NaN	18.146	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307080			1215	6468;12680	703	703							0.06047832453987212
APFSKVLTF	9	Unmodified	_APFSKVLTF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1	ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	505.289485	1008.56442	0.03532	1.7847E-05	-0.48668	-0.00024591	-0.45136	-0.00022807	505.28917908643183	61.882	0.5598	61.873	61.582	62.142	-0.0085526	-0.037138	-0.00043507	NaN	18.146	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412910			1216	6468;12680	703	703							0.06047832453987212
APFTAGTSL	9	Unmodified	_APFTAGTSL_					0	0	0		nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3;nc|ENSG00000128284|O95236-3|APOL3	nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236|APOL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.2135009765625	2	432.726718	863.438883	-0.13359	-5.7808E-05	-0.056878	-2.4613E-05	-0.19047	-8.2421E-05	432.72671273010616	52.124	0.55301	52.124	51.885	52.438	0					37	19	3	0	0	0	0.16284	1	12228	12228		37.974	1.9298	1	396100			1217	3357	704	704	1440	1440					0.0017012059777243849
APFTAGTSL	9	Unmodified	_APFTAGTSL_					0	0	0		nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3;nc|ENSG00000128284|O95236-3|APOL3	nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236|APOL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.21356201171875	2	432.726718	863.438883	-0.0041424	-1.7925E-06	-0.30978	-0.00013405	-0.31392	-0.00013584	432.72658500015524	52.088	0.4893	52.138	51.9	52.389	0.050571					29	17	2	0	0	0	0.16284	1	12201	12201		37.974	1.9298	1	471670			1218	3357	704	704	1441	1441					0.0017012059777243849
APFTAGTSL	9	Unmodified	_APFTAGTSL_					0	0	0		nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3;nc|ENSG00000128284|O95236-3|APOL3	nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236|APOL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.2134094238281	2	432.726718	863.438883	-0.26126	-0.00011305	0.1952	8.4467E-05	-0.06606	-2.8586E-05	432.72681356964915	52.208	0.59266	52.207	51.928	52.521	-0.00080872					39	21	2	0	0	0	0.13898	1	12252	12252		43.858	43.858	1	469320			1219	3357	704	704	1442	1442					0.0017012059777243849
APFVIFQVIGF	11	Unmodified	_APFVIFQVIGF_					0	0	0		ENST00000511920.1_1_5:96514654-96518862:-|nuORF	ENST00000511920.1_1_5:96514654-96518862:-|nuORF	ENST00000511920.1_1_5:96514654-96518862:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.8704833984375	3	413.237504	1236.69068	-0.0006099	-2.5203E-07	3.3456	0.0013825	3.345	0.0013823	413.2387159459149	30.5	0.63393	30.5	30.255	30.889	0					34	22	2	0	0	0	0.33094	1	5597	5597		7.4771	3.3604	1	102870			1220	11390	705	705	1443	1443					0.08180338959277833
APGAWARPR	9	Unmodified	_APGAWARPR_					0	0	0			REV__ENST00000318663.4_1_16:30960393-30960657:+|nuORF	REV__ENST00000318663.4_1_16:30960393-30960657:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7962646484375	2	491.272493	980.530432	0.40289	0.00019793	-0.80348	-0.00039473	-0.40059	-0.0001968	491.27198154499195	46.903	0.62114	46.955	46.679	47.3	0.05257					27	22	2	0	0	0	0.22596	1	10608	10608		15.847	0	1	340950	+		1221	19952	706	706	1444	1444					0.039388488056033566
APGCPHALH	9	Unmodified	_APGCPHALH_					0	0	0			REV__ENST00000204615.11_1_3:184090388-184093318:-|nuORF	REV__ENST00000204615.11_1_3:184090388-184093318:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.2489013671875	2	451.718704	901.422856	0.15819	7.1459E-05	0.53156	0.00024012	0.68975	0.00031157	451.71887080118427	58.99	0.52163	58.99	58.832	59.353	0					28	18	2	0	0	0	0.25291	1	14289	14289		2.3027	2.3027	1	267720	+		1222	19398	707	707	1445	1445					-0.03179864120147613
APGCPHALH	9	Unmodified	_APGCPHALH_					0	0	0			REV__ENST00000204615.11_1_3:184090388-184093318:-|nuORF	REV__ENST00000204615.11_1_3:184090388-184093318:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	451.718704	901.422856	0.21492	9.7083E-05	0.68992	0.00031165	0.90484	0.00040873	451.7190421676757	58.854	0.61437	58.946	58.764	59.379	0.091305	-0.13528	-9.9583E-05	NaN	2.3027	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228160	+		1223	19398	707	707							-0.03179864120147613
APGCPHALH	9	Unmodified	_APGCPHALH_					0	0	0			REV__ENST00000204615.11_1_3:184090388-184093318:-|nuORF	REV__ENST00000204615.11_1_3:184090388-184093318:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	451.718704	901.422856	0.33976	0.00015348	1.5923	0.00071925	1.932	0.00087273	451.71934282535074	59.321	0.091919	59.307	59.248	59.34	-0.014267	0.22583	0.00071562	NaN	2.3027	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29361	+		1224	19398	707	707							-0.03179864120147613
APGEFRAIM	9	Oxidation (M)	_APGEFRAIM(Oxidation (M))_		APGEFRAIM(1)		APGEFRAIM(56)	0	0	1		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2528076171875	2	504.252577	1006.4906	0.52081	0.00026262	0.16651	8.3963E-05	0.68732	0.00034658	504.2525774906328	36.749	0.86703	36.749	36.447	37.314	0					68	30	3	0	0	0	0.04299	1	7512	7512		55.503	28.619	1	607450			1225	5478	708	708	1446	1446		656			-0.012384589799808055
APGEFRAIM	9	Oxidation (M)	_APGEFRAIM(Oxidation (M))_		APGEFRAIM(1)		APGEFRAIM(56)	0	0	1		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2525939941406	2	504.252577	1006.4906	0.42797	0.0002158	0.15771	7.9524E-05	0.58567	0.00029533	504.2526093318133	36.656	0.9019	36.743	36.403	37.305	0.08741					74	32	3	0	0	0	0.04299	1	7486	7486		55.503	34.632	1	762140			1226	5478	708	708	1447	1447		656			-0.012384589799808055
APGEFRAIM	9	Oxidation (M)	_APGEFRAIM(Oxidation (M))_		APGEFRAIM(1)		APGEFRAIM(64)	0	0	1		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2526550292969	2	504.252577	1006.4906	0.73565	0.00037095	-0.056585	-2.8533E-05	0.67906	0.00034242	504.25240084030906	36.671	0.79258	36.764	36.377	37.17	0.093014					63	28	3	0	0	0	0.020233	1	7465	7465		63.961	38.561	1	685280			1227	5478	708	708	1448	1448		656			-0.012384589799808055
APGELLPLR	9	Unmodified	_APGELLPLR_					0	0	0		ENSG00000133980|ENST00000256362|VRTN	ENSG00000133980|ENST00000256362|VRTN	ENSG00000133980|ENST00000256362|VRTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2438659667969	2	483.292559	964.570566	-0.086912	-4.2004E-05	-2.3871	-0.0011536	-2.474	-0.0011956	483.2912855630804	13.842	0.17056	13.776	13.632	13.802	-0.066068					9	5	2	0	0	0	0.26145	1	538	538		2.0598	0	1	18176			1228	3743	709	709	1449	1449					0.08686350685502475
APGELLPLR	9	Unmodified	_APGELLPLR_					0	0	0		ENSG00000133980|ENST00000256362|VRTN	ENSG00000133980|ENST00000256362|VRTN	ENSG00000133980|ENST00000256362|VRTN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	483.292559	964.570566	-0.11304	-5.463E-05	-2.5361	-0.0012257	-2.6491	-0.0012803	483.29106846875334	13.667	0.33532	13.667	13.567	13.902	0	-0.037842	-7.6832E-05	NaN	2.0598	17	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29728			1229	3743	709	709							0.08686350685502475
APGFTLEA	8	Unmodified	_APGFTLEA_					0	0	0			REV__ENSG00000188305|ENST00000342063|PEAK3	REV__ENSG00000188305|ENST00000342063|PEAK3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2157287597656	2	403.208161	804.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.517	1	22.429	21.929	22.929	-0.087608								0	0	0	0.36961	1	3172	3172		5.7604	0	1		+		1230	18546	710	710	1450	1450					-0.008255509480022738
APGIRDHESL	10	Unmodified	_APGIRDHESL_					0	0	0		ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF;nc|ENSG00000143321|P51858-3|HDGF	ENST00000482651.5_1_1:156713243-156717241:-|nuORF	ENST00000482651.5_1_1:156713243-156717241:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7728271484375	2	547.783087	1093.55162	0.33993	0.00018621	0.43893	0.00024044	0.77886	0.00042664	547.783159273945	26.731	0.43128	26.731	26.41	26.841	0					20	14	2	0	0	0	0.25422	1	4447	4447		26.021	5.5671	1	159740			1231	4499	711	711	1451	1451					0.008587693238041538
APGKARKGV	9	Unmodified	_APGKARKGV_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|90|2|sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|90|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.2772521972656	2	442.277244	882.539935	-0.16247	-7.1857E-05	0.56011	0.00024772	0.39764	0.00017587	442.2773869310216	12.447	0.30861	12.447	12.303	12.612	0					19	9	3	0	0	0	0.35563	1	155	155		0.52476	0.52476	1	49117	+		1232	22754	712	712	1452	1452					0.09396617091135795
APGKKTSGL	9	Unmodified	_APGKKTSGL_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;MORF4L1|p.R243Pfs*6|1|0.07|ENSG00000185787|chr15:78893607-78893608|-/C|frameshift_variant;ENST00000561171.5_1_15:79170562-79187198:+|nuORF;ENST00000559619.5_1_15:79165359-79179692:+|nuORF;ENST00000558522.5_1_15:79165359-79183469:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.75567626953125	2	429.75581	857.497067	-0.39206	-0.00016849	0.21222	9.1204E-05	-0.17984	-7.7287E-05	429.75579107371465	13.18	0.98458	13.08	12.321	13.306	-0.099291					70	33	4	0	0	0	0.026579	1	350	350		61.602	33.115	1	596270			1233	7557	713	713	1453	1453					0.06261802243045622
APGKKTSGL	9	Unmodified	_APGKKTSGL_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;MORF4L1|p.R243Pfs*6|1|0.07|ENSG00000185787|chr15:78893607-78893608|-/C|frameshift_variant;ENST00000561171.5_1_15:79170562-79187198:+|nuORF;ENST00000559619.5_1_15:79165359-79179692:+|nuORF;ENST00000558522.5_1_15:79165359-79183469:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	429.75581	857.497067	-0.41765	-0.00017949	0.29475	0.00012667	-0.12291	-5.282E-05	429.7558498305798	13.107	0.52109	13.107	12.815	13.336	0	0.01603	-1.9647E-06	NaN	61.602	45	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	554130			1234	7557	713	713							0.06261802243045622
APGKKTSGL	9	Unmodified	_APGKKTSGL_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;MORF4L1|p.R243Pfs*6|1|0.07|ENSG00000185787|chr15:78893607-78893608|-/C|frameshift_variant;ENST00000561171.5_1_15:79170562-79187198:+|nuORF;ENST00000559619.5_1_15:79165359-79179692:+|nuORF;ENST00000558522.5_1_15:79165359-79183469:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	429.75581	857.497067	-0.46097	-0.00019811	0.34492	0.00014823	-0.11605	-4.9874E-05	429.75584063448747	13.153	0.67653	13.085	12.791	13.468	-0.067495	-0.0054518	4.1161E-05	NaN	61.602	61	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	477370			1235	7557	713	713							0.06261802243045622
APGLRLVL	8	Unmodified	_APGLRLVL_					0	0	0		ENST00000395808.7_1_19:890970-891072:-|nuORF;ENSG00000087448|ENST00000381271|KLHL42	ENST00000395808.7_1_19:890970-891072:-|nuORF	ENST00000395808.7_1_19:890970-891072:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.7788391113281	2	419.779088	837.543623	-0.018245	-7.6589E-06	-0.048212	-2.0239E-05	-0.066458	-2.7897E-05	419.77901699740033	57.616	0.72313	57.616	57.405	58.128	0					37	25	2	0	0	0	0.10069	1	13930	13930		60.39	6.814	1	844210			1236	1307	714	714	1454	1454					0.1183528686497084
APGLRLVL	8	Unmodified	_APGLRLVL_					0	0	0		ENST00000395808.7_1_19:890970-891072:-|nuORF;ENSG00000087448|ENST00000381271|KLHL42	ENST00000395808.7_1_19:890970-891072:-|nuORF	ENST00000395808.7_1_19:890970-891072:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.7790222167969	2	419.779088	837.543623	0.11022	4.6269E-05	-0.14064	-5.9039E-05	-0.030421	-1.277E-05	419.77892768800064	57.469	0.51914	57.554	57.372	57.891	0.085617					34	18	3	0	0	0	0.065797	1	13866	13866		70.716	14.174	1	760000			1237	1307	714	714	1455	1455					0.1183528686497084
APGLRLVL	8	Unmodified	_APGLRLVL_					0	0	0		ENST00000395808.7_1_19:890970-891072:-|nuORF;ENSG00000087448|ENST00000381271|KLHL42	ENST00000395808.7_1_19:890970-891072:-|nuORF	ENST00000395808.7_1_19:890970-891072:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.7788391113281	2	419.779088	837.543623	-0.021641	-9.0846E-06	-0.11871	-4.9832E-05	-0.14035	-5.8917E-05	419.77907120985475	57.669	0.64466	57.652	57.388	58.033	-0.0172					37	23	2	0	0	0	0.042326	1	13940	13940		81.864	18.301	1	770290			1238	1307	714	714	1456	1456					0.1183528686497084
APGLYQRL	8	Unmodified	_APGLYQRL_					0	0	0		ENSG00000165171|ENST00000297873|METTL27	ENSG00000165171|ENST00000297873|METTL27	ENSG00000165171|ENST00000297873|METTL27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.59332275390625	2	459.263802	916.513051	0.11827	5.4317E-05	-0.39042	-0.0001793	-0.27215	-0.00012499	459.2635122905985	48.994	0.46951	49.038	48.824	49.293	0.044891					28	16	2	0	0	0	0.34046	1	11206	11206		9.3474	0	1	523140			1239	5934	715	715	1457	1457					0.051455084799385986
APGPHVLLL	9	Unmodified	_APGPHVLLL_					0	0	0		ENSG00000196329|ENST00000358647|GIMAP5;ENSG00000106560|ENST00000223293|GIMAP2;nc|ENSG00000196329|Q96F15-2|GIMAP5	ENSG00000196329|ENST00000358647|GIMAP5	ENSG00000196329|ENST00000358647|GIMAP5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7847900390625	2	458.78437	915.554188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.103	1	56.103	55.603	56.603	0								0	0	0	0.14247	1	13445	13445		36.466	0.42194	1				1240	2083	716	716	1458	1458					0.09303269519432433
APGPPSRSL	9	Unmodified	_APGPPSRSL_					0	0	0			REV__ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant	REV__ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.54620361328125	2	441.245609	880.476666	0.042211	1.8625E-05	0.0020642	9.1083E-07	0.044275	1.9536E-05	441.2454444146523	27.272	0.54865	27.272	26.953	27.502	0					36	18	3	0	0	0	0.24311	1	4545	4545		16.942	0	1	109010	+		1241	17878	717	717	1459	1459					0.03164631583240407
APGPRGSYL	9	Unmodified	_APGPRGSYL_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.2456359863281	2	459.245609	916.476666	-0.085685	-3.935E-05	0.44319	0.00020353	0.3575	0.00016418	459.2457516845237	31.147	0.77263	31.147	30.781	31.553	0					82	27	4	0	0	0	0.014206	2	5776	5776;5825		72.968	36.841	1	1107900			1242	5722	718	718	1460;1461	1460					0.015086315832377295
APGPRGSYL	9	Unmodified	_APGPRGSYL_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.24566650390625	2	459.245609	916.476666	-0.14103	-6.4768E-05	0.51916	0.00023842	0.37813	0.00017366	459.24576591479024	31.106	0.91958	31.134	30.749	31.669	0.027946					79	32	4	0	0	0	0.010453	3	5776	5776;5825;5880		78.728	42.601	1	1301000			1243	5722	718	718	1462;1463;1464	1462					0.015086315832377295
APGPRGSYL	9	Unmodified	_APGPRGSYL_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2457275390625	2	459.245609	916.476666	0.084882	3.8982E-05	0.20822	9.5626E-05	0.29311	0.00013461	459.2457168981487	31.061	0.84165	31.088	30.704	31.545	0.027157					87	30	5	0	0	0	0.010453	3	5759	5759;5809;5861		78.728	42.601	1	1271500			1244	5722	718	718	1465;1466;1467	1465					0.015086315832377295
APGQRVGML	9	Oxidation (M)	_APGQRVGM(Oxidation (M))L_		APGQRVGM(1)L		APGQRVGM(140)L	0	0	1		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.75274658203125	2	472.752744	943.490935	-0.022917	-1.0834E-05	0.15362	7.2626E-05	0.13071	6.1791E-05	472.7527415390415	26.389	1.0529	26.389	25.955	27.007	0					82	36	3	0	0	0	0.00010798	4	4359	4267;4314;4359;4406		139.54	72.2	1	1211800			1245	977;10095	719	719	1468;1469;1470;1471	1470		119			0.016929607398878943
APGQRVGML	9	Oxidation (M)	_APGQRVGM(Oxidation (M))L_		APGQRVGM(1)L		APGQRVGM(110)L	0	0	1		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7527160644531	2	472.752744	943.490935	0.076717	3.6268E-05	0.056452	2.6688E-05	0.13317	6.2956E-05	472.7526930303041	26.391	1.0976	26.352	25.985	27.083	-0.038671					93	38	3	0	0	0	0.0017972	4	4321	4277;4321;4373;4415		112.59	55.122	1	1355500			1246	977;10095	719	719	1472;1473;1474;1475	1473		119			0.016929607398878943
APGQRVGML	9	Oxidation (M)	_APGQRVGM(Oxidation (M))L_		APGQRVGM(1)L		APGQRVGM(130)L	0	0	1		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.752685546875	2	472.752744	943.490935	0.31636	0.00014956	-0.21297	-0.00010068	0.10338	4.8874E-05	472.7525791114424	26.463	1.0165	26.441	26.043	27.059	-0.022236					88	35	3	0	0	0	0.00077644	4	4331	4284;4331;4376;4418		125.62	58.281	1	1395300			1247	977;10095	719	719	1476;1477;1478;1479	1477		119			0.016929607398878943
APGSARRPL	9	Unmodified	_APGSARRPL_					0	0	0		LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000185896|ENST00000332556|LAMP1	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.77227783203125	2	462.772326	923.530098	-0.18047	-8.3517E-05	-0.061258	-2.8349E-05	-0.24173	-0.00011187	462.7723725921604	15.909	1.2526	15.909	15.181	16.433	0					126	43	4	0	0	0	0.0023784	3	1186	1138;1186;1229		107.19	49.716	1	1879100			1248	7565	720	720	1480;1481;1482	1481					0.0652742908575874
APGSARRPL	9	Unmodified	_APGSARRPL_					0	0	0		LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000185896|ENST00000332556|LAMP1	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.77227783203125	2	462.772326	923.530098	-0.16457	-7.6157E-05	0.042617	1.9722E-05	-0.12195	-5.6435E-05	462.7724134604733	16.03	1.2218	15.915	15.226	16.448	-0.11434					104	41	4	0	0	0	0.004681	3	1181	1181;1236;1280		88.954	39.021	1	1872000			1249	7565	720	720	1483;1484;1485	1483					0.0652742908575874
APGSARRPL	9	Unmodified	_APGSARRPL_					0	0	0		LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000185896|ENST00000332556|LAMP1	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.7723083496094	2	462.772326	923.530098	0.025275	1.1697E-05	-0.18064	-8.3595E-05	-0.15536	-7.1898E-05	462.772315957251	15.959	1.1332	15.897	15.249	16.382	-0.062534					111	38	4	0	0	0	0.0033114	3	1193	1152;1193;1239		99.799	49.866	1	1993400			1250	7565	720	720	1486;1487;1488	1487					0.0652742908575874
APGSARRPLL	10	Unmodified	_APGSARRPLL_					0	0	0		LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000185896|ENST00000332556|LAMP1	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2685546875	2	519.314358	1036.61416	0.18403	9.557E-05	0.033383	1.7336E-05	0.21742	0.00011291	519.3142548523093	25.063	0.73383	25.007	24.748	25.482	-0.055931					47	25	3	0	0	0	0.31691	1	3954	3954		9.3831	1.473	1	276730			1251	7565	721	721	1489	1489					0.09731960182671173
APGSARRPLLL	11	Unmodified	_APGSARRPLLL_					0	0	0		LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000185896|ENST00000332556|LAMP1	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8568115234375	2	575.85639	1149.69823	0.16125	9.2859E-05	0.20179	0.0001162	0.36305	0.00020906	575.8565587943133	35.544	0.57899	35.544	35.328	35.907	0					34	20	3	0	0	0	0.39802	1	7131	7131		11.495	4.7715	1	402740			1252	7565	722	722	1490	1490					0.1293649127956087
APGSARRPLLL	11	Unmodified	_APGSARRPLLL_					0	0	0		LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000185896|ENST00000332556|LAMP1	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8563842773438	2	575.85639	1149.69823	-0.16823	-9.6878E-05	0.62987	0.00036272	0.46164	0.00026584	575.8566413395669	35.478	0.55526	35.564	35.263	35.818	0.08625					31	19	2	0	0	0	0.41896	1	7096	7096		8.7454	2.0222	1	495460			1253	7565	722	722	1491	1491					0.1293649127956087
APGSRQLLL	9	Unmodified	_APGSRQLLL_					0	0	0			REV__ENST00000405737.2_2_13:41635036-41635183:-|nuORF	REV__ENST00000405737.2_2_13:41635036-41635183:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.2802429199219	2	477.790184	953.565815	0.039542	1.8893E-05	0.10531	5.0316E-05	0.14485	6.9208E-05	477.7901693925093	23.092	0.45356	23.005	22.762	23.216	-0.087608					23	15	2	0	0	0	0.26117	1	3289	3289		2.3027	0	1	66427	+		1254	20735	723	723	1492	1492					0.08717466542771035
APGTYQPRLAG	11	Unmodified	_APGTYQPRLAG_					0	0	0		ENSG00000167799|ENST00000376693|NUDT8;ENST00000301490.8_2_11:67395419-67395788:-|nuORF	ENSG00000167799|ENST00000376693|NUDT8	ENSG00000167799|ENST00000376693|NUDT8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.8158569335938	2	565.80128	1129.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.996	1	45.996	45.496	46.496	0								0	0	0	0.28435	1	10327	10327		22.658	3.4011	1				1255	6213	724	724	1493	1493					0.028396462205364514
APGVLIVRF	9	Unmodified	_APGVLIVRF_					0	0	0		ENSG00000233757|ENST00000425953|ZNF892	ENSG00000233757|ENST00000425953|ZNF892	ENSG00000233757|ENST00000425953|ZNF892	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.24932861328125	2	486.30547	970.596387	0.27245	0.00013249	-1.7889	-0.00086995	-1.5164	-0.00073746	486.3039117660484	70.332	1.1743	70.332	69.895	71.07	0					81	42	3	0	0	0	0.17949	1	17789	17789		32.117	8.9685	1	790760			1256	8482	725	725	1494	1494					0.10991244927799926
APGVLIVRF	9	Unmodified	_APGVLIVRF_					0	0	0		ENSG00000233757|ENST00000425953|ZNF892	ENSG00000233757|ENST00000425953|ZNF892	ENSG00000233757|ENST00000425953|ZNF892	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2492980957031	2	486.30547	970.596387	0.27086	0.00013172	-2.163	-0.0010519	-1.8922	-0.00092017	486.30366082445084	70.329	1.5796	70.391	69.963	71.543	0.06179					98	56	3	0	0	0	0.21137	1	17772	17772		24.674	7.7316	1	788510			1257	8482	725	725	1495	1495					0.10991244927799926
APGVRAVEL	9	Unmodified	_APGVRAVEL_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.26910400390625	2	456.269084	910.523616	0.1338	6.1049E-05	0.12344	5.632E-05	0.25724	0.00011737	456.26903180391383	40.171	0.96505	40.171	39.803	40.768	0					80	34	3	0	0	0	0.0079761	2	8571	8515;8571		82.529	19.957	1	1595100			1258	3147	726	726	1496;1497	1497					0.06477491134376123
APGVRAVEL	9	Unmodified	_APGVRAVEL_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.26922607421875	2	456.269084	910.523616	0.37599	0.00017155	-0.064109	-2.9251E-05	0.31188	0.0001423	456.26895764677914	40.012	0.75539	40.105	39.83	40.585	0.09267					79	26	4	0	0	0	0.003317	2	8507	8463;8507		99.755	27.833	1	1694100			1259	3147	726	726	1498;1499	1499					0.06477491134376123
APGVRAVEL	9	Unmodified	_APGVRAVEL_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2690734863281	2	456.269084	910.523616	0.22684	0.0001035	0.034284	1.5643E-05	0.26113	0.00011914	456.26902783163587	39.95	0.87928	40.049	39.762	40.641	0.099407					91	31	4	0	0	0	0.003317	1	8487	8487		99.755	21.027	1	1709700			1260	3147	726	726	1500	1500					0.06477491134376123
APHKYYIGF	9	Unmodified	_APHKYYIGF_					0	0	0		ENSG00000066926|ENST00000262093|FECH;nc|ENSG00000066926|P22830-2|FECH	ENSG00000066926|ENST00000262093|FECH	ENSG00000066926|ENST00000262093|FECH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7659912109375	2	548.284734	1094.55492	0.4505	0.000247	-3.0822	-0.0016899	-2.6317	-0.0014429	548.2829061680109	28.894	0.54109	28.894	28.548	29.089	0					27	18	2	0	0	0	0.23775	1	5023	5023		18.135	4.2289	1	87949			1261	850	727	727	1501	1501					0.01142064168448087
APHRFYTTV	9	Unmodified	_APHRFYTTV_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP;nc|ENSG00000154175|Q7Z7G0-2|ABI3BP;ENST00000470336.5_1_3:100469341-100565327:-|nuORF;nc|ENSG00000154175|Q7Z7G0-3|ABI3BP;nc|ENSG00000154175|Q7Z7G0-4|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.8309936523438	2	546.285266	1090.55598	0.5787	0.00031613	-0.23705	-0.0001295	0.34165	0.00018664	546.2854942931748	29.05	0.62018	29.05	28.845	29.465	0					40	22	3	0	0	0	0.25843	1	5120	5120		5.7319	5.7319	1	208880			1262	5110	728	728	1502	1502					0.014322785373678926
APHRPAPAL	9	Unmodified	_APHRPAPAL_					0	0	0		nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7475891113281	2	465.269419	928.524284	-0.0056718	-2.6389E-06	-0.43456	-0.00020219	-0.44023	-0.00020483	465.2692286379696	21.64	0.58395	21.64	21.338	21.922	0					31	20	2	0	0	0	0.2451	1	2889	2889		15.847	4.2069	1	82029		+	1263	12749	729	729	1503	1503					0.057163305740687065
APHRPAPAL	9	Unmodified	_APHRPAPAL_					0	0	0		nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7490234375	2	465.269419	928.524284	0.085898	3.9966E-05	-0.32904	-0.00015309	-0.24315	-0.00011313	465.2692864970536	21.791	0.55005	21.69	21.338	21.888	-0.10034					27	19	2	0	0	0	0.22596	1	2916	2916		21.747	4.8044	1	95442		+	1264	12749	729	729	1504	1504					0.057163305740687065
APHRPAPAL	9	Unmodified	_APHRPAPAL_					0	0	0		nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.74884033203125	2	465.269419	928.524284	0.16014	7.4509E-05	-0.10005	-4.6551E-05	0.06009	2.7958E-05	465.2691152523016	21.695	0.51077	21.645	21.344	21.855	-0.049377					25	17	2	0	0	0	0.2451	1	2895	2895		15.847	1.9411	1	80972		+	1265	12749	729	729	1505	1505					0.057163305740687065
APIAIMLWKIL	11	Unmodified	_APIAIMLWKIL_					0	0	0			REV__ENSG00000173208|ENST00000308666|ABCD2	REV__ENSG00000173208|ENST00000308666|ABCD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.8930053710938	2	634.893595	1267.77264	0.024015	1.5247E-05	-0.48025	-0.00030491	-0.45624	-0.00028966	634.8929842786309	97.302	0.95656	97.302	97.002	97.959	0					294	99	4	0	0	0	0.44966	1	25965	25965		9.3831	3.6513	1	1113100	+		1266	17768	730	730	1506	1506					0.1494611804669148
APIFRKSRS	9	Unmodified	_APIFRKSRS_					0	0	0		ENST00000327628.9_2_3:42133049-42166989:+|nuORF;ENST00000487159.5_2_3:42128838-42166989:+|nuORF	ENST00000327628.9_2_3:42133049-42166989:+|nuORF	ENST00000327628.9_2_3:42133049-42166989:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3251953125	2	531.314358	1060.61416	0.67045	0.00035622	2.7767	0.0014753	3.4472	0.0018315	531.816781982598	85.823	0.59434	85.814	85.535	86.129	-0.0090103					28	21	2	0	0	0	0.23784	1	22627	22627		19.257	1.1106	1	250010			1267	9426	731	731	1507	1507					0.08627960182661809
APIGSDVAQV	10	Unmodified	_APIGSDVAQV_					0	0	0			REV__ENSG00000165323|ENST00000525166|FAT3	REV__ENSG00000165323|ENST00000525166|FAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.97491455078125	2	478.756007	955.497461	0.2477	0.00011859	-1.1895	-0.00056947	-0.94178	-0.00045088	478.7562013701798	39.703	0.417	39.802	39.593	40.01	0.099407					35	14	3	0	0	0	0.29589	1	8402	8402		4.897	0	1	412760	+		1268	17228	732	732	1508	1508					0.017931771722373924
APILHYRL	8	Unmodified	_APILHYRL_					0	0	0		ENST00000606089.1_1_5:133340855-133341212:+|nuORF	ENST00000606089.1_1_5:133340855-133341212:+|nuORF	ENST00000606089.1_1_5:133340855-133341212:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.7964172363281	2	491.795269	981.575986	0.78657	0.00038683	0.62614	0.00030793	1.4127	0.00069476	491.79550920990766	46.96	0.93914	47.014	46.602	47.541	0.054375					58	33	2	0	0	0	0.44842	1	10617	10617		6.3541	0	1	1037200			1269	12294	733	733	1509	1509					0.08446074267999393
APILKRAL	8	Unmodified	_APILKRAL_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000128578|Q9ULQ0-2|STRIP2	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.29998779296875	2	441.300188	880.585822	0.27276	0.00012037	-0.36979	-0.00016319	-0.097031	-4.282E-05	441.29989316213914	29.012	0.56434	29.012	28.791	29.355	0					46	20	3	0	0	0	0.13961	1	5118	5118		53.576	13.127	1	545840			1270	4478;3374	734	734	1510	1510					0.14075262273365752
APILKRAL	8	Unmodified	_APILKRAL_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000128578|Q9ULQ0-2|STRIP2	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.3000183105469	2	441.300188	880.585822	0.10555	4.658E-05	-0.24368	-0.00010754	-0.13813	-6.0957E-05	441.29999099397185	28.97	0.59472	28.977	28.732	29.327	0.0076809					47	20	3	0	0	0	0.10069	1	5125	5125		60.39	13.469	1	605770			1271	4478;3374	734	734	1511	1511					0.14075262273365752
APILKRAL	8	Unmodified	_APILKRAL_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000128578|Q9ULQ0-2|STRIP2	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.29998779296875	2	441.300188	880.585822	0.035761	1.5781E-05	-0.092667	-4.0894E-05	-0.056906	-2.5113E-05	441.30001014759125	29.022	0.74907	29.035	28.758	29.507	0.013475					56	26	3	0	0	0	0.10069	1	5135	5135		60.39	13.469	1	489460			1272	4478;3374	734	734	1512	1512					0.14075262273365752
APIQGSRNL	9	Unmodified	_APIQGSRNL_					0	0	0		ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2695617675781	2	478.269616	954.524678	0.077571	3.71E-05	-0.29397	-0.0001406	-0.2164	-0.0001035	478.26943936546695	25.279	0.58789	25.279	25.035	25.623	0					45	19	3	0	0	0	0.014206	1	3993	3993		72.968	19.135	1	487390			1273	1620	735	735	1513	1513					0.045597055032772005
APIQGSRNL	9	Unmodified	_APIQGSRNL_					0	0	0		ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2695007324219	2	478.269616	954.524678	0.017773	8.5002E-06	-0.10924	-5.2244E-05	-0.091463	-4.3744E-05	478.2694813555583	25.311	0.59706	25.256	25.023	25.62	-0.055931					45	20	3	0	0	0	0.04299	1	4003	4003		55.503	13.663	1	581970			1274	1620	735	735	1514	1514					0.045597055032772005
APIQGSRNL	9	Unmodified	_APIQGSRNL_					0	0	0		ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	478.269616	954.524678	0.017773	8.5002E-06	-0.10924	-5.2244E-05	-0.091463	-4.3744E-05	478.2694813555583	25.311	0.59706	25.256	25.023	25.62	-0.055931	-0.025255	1.871E-05	NaN	72.968	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	581970			1275	1620	735	735							0.045597055032772005
APIRQPLL	8	Unmodified	_APIRQPLL_					0	0	0			REV__ENST00000375114.7_1_20:32667742-32668009:+|nuORF	REV__ENST00000375114.7_1_20:32667742-32668009:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.19964599609375	2	454.28982	906.565087	0.19891	9.0364E-05	0.26087	0.00011851	0.45978	0.00020888	454.2897470781065	46.703	0.36425	46.757	46.544	46.908	0.054375					17	12	2	0	0	0	0.29134	1	10527	10527		26.341	0	1	182730	+		1276	20471	736	736	1515	1515					0.10806671893703879
APISVRVEL	9	Unmodified	_APISVRVEL_					0	0	0		ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2979431152344	2	492.297842	982.581131	0.6051	0.00029789	3.3718	0.0016599	3.9769	0.0019578	492.29772164241876	53.83	0.6458	53.83	53.516	54.162	0					72	23	5	0	0	0	0.010888	1	12768	12768		78.06	33.653	1	1049300			1277	7061	737	737	1516	1516					0.08914333339953373
APISVRVEL	9	Unmodified	_APISVRVEL_					0	0	0		ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2978515625	2	492.297842	982.581131	0.30716	0.00015121	3.9092	0.0019245	4.2163	0.0020757	492.29782750466995	53.808	0.73064	53.865	53.535	54.265	0.056255					70	27	4	0	0	0	0.059067	1	12753	12753		49.527	5.1202	1	1210600			1278	7061	737	737	1517	1517					0.08914333339953373
APISVRVEL	9	Unmodified	_APISVRVEL_					0	0	0		ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.297607421875	2	492.297842	982.581131	0.47082	0.00023178	3.9197	0.0019297	4.3906	0.0021615	492.29766921725417	53.897	0.78439	53.887	53.637	54.421	-0.0096092					66	28	4	0	0	0	0.060198	1	12740	12740		71.708	8.1451	1	849950			1279	7061	737	737	1518	1518					0.08914333339953373
APITLPRSL	9	Unmodified	_APITLPRSL_					0	0	0		CON__Q3SZH5	CON__Q3SZH5	CON__Q3SZH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.3005065917969	2	484.300384	966.586216	0.30657	0.00014847	0.1393	6.7464E-05	0.44587	0.00021593	484.3005314490728	53.009	0.90612	53.009	52.767	53.674	0					70	33	3	0	0	0	0.23767	1	12541	12541		18.146	0.011366	1	1924800		+	1280	234	738	738	1519	1519					0.10158637202562204
APKAFIISF	9	Unmodified	_APKAFIISF_					0	0	0		nc|ENSG00000127125|Q9HAB8-2|PPCS;ENSG00000127125|ENST00000372561|PPCS	nc|ENSG00000127125|Q9HAB8-2|PPCS	nc|ENSG00000127125|Q9HAB8-2|PPCS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2920227050781	2	497.292028	992.569503	0.56598	0.00028146	0.22867	0.00011372	0.79465	0.00039517	497.29200629487207	66.279	0.59135	66.279	66.068	66.659	0					55	20	3	0	0	0	0.0054984	2	16579	16579;16636		86.332	36.399	1	1000100			1281	3306	739	739	1520;1521	1520					0.07292136316607412
APKAFIISF	9	Unmodified	_APKAFIISF_					0	0	0		nc|ENSG00000127125|Q9HAB8-2|PPCS;ENSG00000127125|ENST00000372561|PPCS	nc|ENSG00000127125|Q9HAB8-2|PPCS	nc|ENSG00000127125|Q9HAB8-2|PPCS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.29229736328125	2	497.292028	992.569503	0.5449	0.00027097	0.17487	8.6964E-05	0.71977	0.00035794	497.29197803223514	66.193	0.63536	66.277	65.996	66.631	0.083832					57	22	3	0	0	0	0.0046246	2	16581	16529;16581		89.401	37.132	1	792880			1282	3306	739	739	1522;1523	1523					0.07292136316607412
APKAFIISF	9	Unmodified	_APKAFIISF_					0	0	0		nc|ENSG00000127125|Q9HAB8-2|PPCS;ENSG00000127125|ENST00000372561|PPCS	nc|ENSG00000127125|Q9HAB8-2|PPCS	nc|ENSG00000127125|Q9HAB8-2|PPCS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2922058105469	2	497.292028	992.569503	0.36393	0.00018098	0.30594	0.00015214	0.66987	0.00033312	497.2920806573188	66.339	0.71471	66.325	65.999	66.714	-0.013588					57	25	3	0	0	0	0.011693	2	16604	16556;16604		76.825	30.804	1	845040			1283	3306	739	739	1524;1525	1525					0.07292136316607412
APKAPEVTTV	10	Unmodified	_APKAPEVTTV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.24798583984375	2	506.787307	1011.56006	0.50304	0.00025493	-0.061835	-3.1337E-05	0.4412	0.0002236	506.78717796631656	55.34	0.66673	55.411	55.085	55.751	0.070885					33	24	2	0	0	0	0.31323	1	13258	13258		15.248	7.093	1	409670			1284	5186	740	740	1526	1526					0.054743232404121045
APKDIASGL	9	Unmodified	_APKDIASGL_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;CON__ENSEMBL:ENSBTAP00000031900	ENSG00000047457|ENST00000264613|CP;CON__ENSEMBL:ENSBTAP00000031900	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2477111816406	2	436.247818	870.481082	-1.4051	-0.00061299	0.18087	7.8905E-05	-1.2243	-0.00053409	436.2478347572785	34.747	1.1293	34.747	34.446	35.575	0					100	40	4	0	0	0	0.00019464	2	6860	6860;6908		133.05	54.903	1	4217500		+	1285	632;203	741	741	1527;1528	1527					0.04066096006135922
APKDIASGL	9	Unmodified	_APKDIASGL_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;CON__ENSEMBL:ENSBTAP00000031900	ENSG00000047457|ENST00000264613|CP;CON__ENSEMBL:ENSBTAP00000031900	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.2470397949219	2	436.247818	870.481082	-1.534	-0.0006692	0.11222	4.8957E-05	-1.4218	-0.00062024	436.24778973322515	34.643	1.0394	34.718	34.414	35.454	0.075306					109	37	4	0	0	0	7.3453E-05	1	6873	6873		145.13	59.858	1	4375000		+	1286	632;203	741	741	1529	1529					0.04066096006135922
APKDIASGL	9	Unmodified	_APKDIASGL_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;CON__ENSEMBL:ENSBTAP00000031900	ENSG00000047457|ENST00000264613|CP;CON__ENSEMBL:ENSBTAP00000031900	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.24700927734375	2	436.247818	870.481082	-0.74978	-0.00032709	-0.70047	-0.00030558	-1.4502	-0.00063267	436.2474578464927	34.632	1.0787	34.709	34.363	35.441	0.077377					103	38	4	0	0	0	0.00019464	2	6856	6811;6856		133.05	54.903	1	4050700		+	1287	632;203	741	741	1530;1531	1531					0.04066096006135922
APKEIIPEKKV	11	Unmodified	_APKEIIPEKKV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.3865966796875	2	626.387188	1250.75982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.15	1	104.15	103.65	104.65	0								0	0	0	0.37609	1	27655	27655		2.4985	1.0166	1				1288	5186	742	742	1532	1532					0.14447378188174298
APKFTVETL	9	Unmodified	_APKFTVETL_					0	0	0		nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7746276855469	2	503.2844	1004.55425	0.35282	0.00017757	1.7011	0.00085612	2.0539	0.0010337	503.2849675739514	49.758	0.50586	49.758	49.572	50.077	0					25	18	2	0	0	0	0.20381	1	11472	11472		23.79	0	1	142080			1289	4939	743	743	1533	1533					0.0521522472874949
APKKSATQF	9	Unmodified	_APKKSATQF_					0	0	0		ENSG00000163382|ENST00000368235|NAXE;nc|ENSG00000163382|Q8NCW5-2|NAXE	ENSG00000163382|ENST00000368235|NAXE	ENSG00000163382|ENST00000368235|NAXE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.7499084472656	2	489.274367	976.53418	0.02962	1.4492E-05	0.20398	9.9803E-05	0.2336	0.0001143	489.27444940062975	14.629	0.54466	14.524	14.308	14.853	-0.10466					29	18	2	0	0	0	0.12329	1	773	773		49.554	22.671	1	151850			1290	5673	744	744	1534	1534					0.04497473788808293
APKKSATQF	9	Unmodified	_APKKSATQF_					0	0	0		ENSG00000163382|ENST00000368235|NAXE;nc|ENSG00000163382|Q8NCW5-2|NAXE	ENSG00000163382|ENST00000368235|NAXE	ENSG00000163382|ENST00000368235|NAXE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.74981689453125	2	489.274367	976.53418	-0.0029202	-1.4288E-06	0.25452	0.00012453	0.2516	0.0001231	489.27450633000797	14.591	0.46945	14.525	14.4	14.869	-0.066068					36	16	3	0	0	0	0.24787	1	756	756		15.248	1.3424	1	158120			1291	5673	744	744	1535	1535					0.04497473788808293
APKPQGPAF	9	Unmodified	_APKPQGPAF_					0	0	0		nc|ENSG00000115325|Q99704-3|DOK1;ENSG00000115325|ENST00000233668|DOK1	nc|ENSG00000115325|Q99704-3|DOK1	nc|ENSG00000115325|Q99704-3|DOK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.79315185546875	2	456.750527	911.486502	0.15998	7.3073E-05	-0.30993	-0.00014156	-0.14995	-6.8488E-05	456.75048014287717	30.487	0.6681	30.487	30.194	30.862	0					49	23	3	0	0	0	0.0088261	1	5580	5580		64.236	28.192	1	372670			1292	2635	745	745	1536	1536					0.027218195886121066
APKPQGPAF	9	Unmodified	_APKPQGPAF_					0	0	0		nc|ENSG00000115325|Q99704-3|DOK1;ENSG00000115325|ENST00000233668|DOK1	nc|ENSG00000115325|Q99704-3|DOK1	nc|ENSG00000115325|Q99704-3|DOK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7931213378906	2	456.750527	911.486502	0.20481	9.3545E-05	-0.1183	-5.4034E-05	0.086506	3.9512E-05	456.7505061597796	30.489	0.62259	30.517	30.218	30.841	0.027946					42	21	3	0	0	0	0.0069594	1	5583	5583		81.613	53.126	1	365720			1293	2635	745	745	1537	1537					0.027218195886121066
APKQTFLRLRT	11	Unmodified	_APKQTFLRLRT_					0	0	0		ENST00000373100.5_2_20:42203636-42208645:+|nuORF	ENST00000373100.5_2_20:42203636-42208645:+|nuORF	ENST00000373100.5_2_20:42203636-42208645:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	444.2701721191406	3	444.269978	1329.7881	0.22846	0.0001015	-0.18969	-8.4273E-05	0.038771	1.7225E-05	444.2699754344839	37.781	0.81834	37.872	37.609	38.427	0.090881					78	29	4	0	0	0	0.39244	1	7813	7813		12.228	3.4758	1	1686700			1294	9858	746	746	1538	1538					0.13640120888112506
APKQTFLRLRT	11	Unmodified	_APKQTFLRLRT_					0	0	0		ENST00000373100.5_2_20:42203636-42208645:+|nuORF	ENST00000373100.5_2_20:42203636-42208645:+|nuORF	ENST00000373100.5_2_20:42203636-42208645:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	444.2701110839844	3	444.269978	1329.7881	0.2641	0.00011733	-0.15733	-6.9896E-05	0.10677	4.7436E-05	444.2699650163181	37.721	0.79586	37.819	37.552	38.348	0.097527					78	28	4	0	0	0	0.41892	1	7797	7797		8.7518	2.1283	1	1459400			1295	9858	746	746	1539	1539					0.13640120888112506
APKRPPLAF	9	Unmodified	_APKRPPLAF_					0	0	0		nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7261657714844	2	498.803094	995.591636	0.23955	0.00011949	-0.48344	-0.00024114	-0.24389	-0.00012165	498.80285667690924	35.493	0.59999	35.493	35.2	35.8	0					32	21	2	0	0	0	0.21389	1	7062	7062		25.399	21.455	1	273020			1296	12581	747	747	1540	1540					0.09366360785031702
APKRPPLAF	9	Unmodified	_APKRPPLAF_					0	0	0		nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7261657714844	2	498.803094	995.591636	0.20572	0.00010261	-0.55569	-0.00027718	-0.34998	-0.00017457	498.8026508664288	35.443	0.52192	35.519	35.21	35.732	0.075306					30	18	2	0	0	0	0.1854	1	7038	7038		32.305	21.482	1	342250			1297	12581	747	747	1541	1541					0.09366360785031702
APKRPPLAF	9	Unmodified	_APKRPPLAF_					0	0	0		nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.726318359375	2	498.803094	995.591636	-0.16793	-8.3763E-05	-0.056868	-2.8366E-05	-0.2248	-0.00011213	498.80284679540733	35.456	0.49489	35.54	35.201	35.696	0.08337					31	17	2	0	0	0	0.1524	1	7036	7036		39.957	29.133	1	284520			1298	12581	747	747	1542	1542					0.09366360785031702
APKRPPSAF	9	Unmodified	_APKRPPSAF_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000402555.2_1_6:53100721-53100889:-|nuORF;HMGB2|p.Q142Lfs*5|1|0.07|ENSG00000164104|chr4:173332869-173332870|-/CAGC|frameshift_variant;HMGB2|p.K141Tfs*14|1|0.06|ENSG00000164104|chr4:173332870-173332871|-/ATGTTTTGAAAAGGCCTAATGAAAATTG|frameshift_variant;ENSG00000164104|ENST00000296503|HMGB2	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.777099609375	2	485.777077	969.5396	0.083806	4.0711E-05	-0.050515	-2.4539E-05	0.033291	1.6172E-05	485.7769496603434	22.452	1.9894	22.452	21.459	23.448	0					179	70	4	0	0	0	0.00045155	3	3162	3112;3162;3206		129.77	59.191	1	2065600			1299	7817	748	748	1543;1544;1545	1544					0.053611973712691
APKRPPSAF	9	Unmodified	_APKRPPSAF_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000402555.2_1_6:53100721-53100889:-|nuORF;HMGB2|p.Q142Lfs*5|1|0.07|ENSG00000164104|chr4:173332869-173332870|-/CAGC|frameshift_variant;HMGB2|p.K141Tfs*14|1|0.06|ENSG00000164104|chr4:173332870-173332871|-/ATGTTTTGAAAAGGCCTAATGAAAATTG|frameshift_variant;ENSG00000164104|ENST00000296503|HMGB2	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7770690917969	2	485.777077	969.5396	0.091614	4.4504E-05	0.078125	3.7951E-05	0.16974	8.2455E-05	485.77703795811067	22.586	1.6785	22.498	21.729	23.407	-0.087608					173	60	4	0	0	0	1.2283E-05	3	3194	3147;3194;3239		155.03	80.097	1	2123800			1300	7817	748	748	1546;1547;1548	1547					0.053611973712691
APKRPPSAF	9	Unmodified	_APKRPPSAF_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000402555.2_1_6:53100721-53100889:-|nuORF;HMGB2|p.Q142Lfs*5|1|0.07|ENSG00000164104|chr4:173332869-173332870|-/CAGC|frameshift_variant;HMGB2|p.K141Tfs*14|1|0.06|ENSG00000164104|chr4:173332870-173332871|-/ATGTTTTGAAAAGGCCTAATGAAAATTG|frameshift_variant;ENSG00000164104|ENST00000296503|HMGB2	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.77703857421875	2	485.777077	969.5396	0.11424	5.5497E-05	-0.052315	-2.5413E-05	0.061929	3.0084E-05	485.77695940773197	22.594	1.9474	22.549	21.497	23.444	-0.044867					175	69	4	0	0	0	0.0013683	3	3182	3135;3182;3226		118.07	61.891	1	2095500			1301	7817	748	748	1549;1550;1551	1550					0.053611973712691
APKRPPSAFF	10	Unmodified	_APKRPPSAFF_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000402555.2_1_6:53100721-53100889:-|nuORF;HMGB2|p.Q142Lfs*5|1|0.07|ENSG00000164104|chr4:173332869-173332870|-/CAGC|frameshift_variant;HMGB2|p.K141Tfs*14|1|0.06|ENSG00000164104|chr4:173332870-173332871|-/ATGTTTTGAAAAGGCCTAATGAAAATTG|frameshift_variant;ENSG00000164104|ENST00000296503|HMGB2	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.3117065429688	2	559.311284	1116.60801	0.5963	0.00033352	-0.55145	-0.00030843	0.044853	2.5087E-05	559.3095192600341	37.062	0.99759	37.062	36.59	37.587	0					97	35	4	0	0	0	0.19345	1	7589	7589		33.445	14.188	1	743290			1302	7817	749	749	1552	1552					0.054374419511077576
APKRPPSAFF	10	Unmodified	_APKRPPSAFF_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000402555.2_1_6:53100721-53100889:-|nuORF;HMGB2|p.Q142Lfs*5|1|0.07|ENSG00000164104|chr4:173332869-173332870|-/CAGC|frameshift_variant;HMGB2|p.K141Tfs*14|1|0.06|ENSG00000164104|chr4:173332870-173332871|-/ATGTTTTGAAAAGGCCTAATGAAAATTG|frameshift_variant;ENSG00000164104|ENST00000296503|HMGB2	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.311279296875	2	559.311284	1116.60801	0.43692	0.00024437	0.057349	3.2076E-05	0.49427	0.00027645	559.309496865388	36.873	1.1987	36.96	36.516	37.714	0.08741					104	43	4	0	0	0	0.093324	3	7546	7500;7546;7614		49.527	28.656	1	501280			1303	7817	749	749	1553;1554;1555	1554					0.054374419511077576
APKRPPSAFF	10	Unmodified	_APKRPPSAFF_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000402555.2_1_6:53100721-53100889:-|nuORF;HMGB2|p.Q142Lfs*5|1|0.07|ENSG00000164104|chr4:173332869-173332870|-/CAGC|frameshift_variant;HMGB2|p.K141Tfs*14|1|0.06|ENSG00000164104|chr4:173332870-173332871|-/ATGTTTTGAAAAGGCCTAATGAAAATTG|frameshift_variant;ENSG00000164104|ENST00000296503|HMGB2	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.3116455078125	2	559.311284	1116.60801	0.55357	0.00030962	-0.26593	-0.00014874	0.28764	0.00016088	559.3095763718592	36.905	1.199	36.998	36.536	37.735	0.093018					99	43	4	0	0	0	0.21589	1	7537	7537		30.703	13.761	1	572990			1304	7817	749	749	1556	1556					0.054374419511077576
APKRQSPL	8	Unmodified	_APKRQSPL_					0	0	0		ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP;nc|ENSG00000119335|Q01105|SET	ENSG00000230667|ENST00000596516|SETSIP	ENSG00000230667|ENST00000596516|SETSIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.77740478515625	2	448.769252	895.52395	0.51849	0.00023268	-0.53125	-0.00023841	-0.012768	-5.73E-06	448.76886212561357	33.578	0.24912	33.644	33.484	33.733	0.06636					10	8	2	0	0	0	0.4354	1	6540	6540		10.824	1.4765	1	35360			1305	8468	750	750	1557	1557					0.07200910854237463
APKSRPLSI	9	Unmodified	_APKSRPLSI_					0	0	0			REV__ENST00000519672.1_1_5:146788331-146833150:-|nuORF	REV__ENST00000519672.1_1_5:146788331-146833150:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2825012207031	2	484.798009	967.581465	0.23359	0.00011324	-0.54053	-0.00026205	-0.30694	-0.00014881	484.7976956905673	51.544	0.95256	51.591	51.245	52.198	0.046574					57	34	2	0	0	0	0.2322	1	11974	11974		6.2058	0	1	2989400	+		1306	21875	751	751	1558	1558					0.09637753059814713
APKSSKTEL	9	Unmodified	_APKSSKTEL_					0	0	0		nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:50057675-50130728:+|nuORF	nc|ENSG00000151883|Q8N3A8-2|PARP8	nc|ENSG00000151883|Q8N3A8-2|PARP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7713928222656	2	480.771657	959.528761	-0.13936	-6.6999E-05	0.38812	0.0001866	0.24876	0.0001196	480.77180233945484	13.551	0.45788	13.551	13.336	13.794	0					34	15	4	0	0	0	0.01909	1	458	458		65.474	31.371	1	255040			1307	4990	752	752	1559	1559					0.04737750206322744
APKSSKTEL	9	Unmodified	_APKSSKTEL_					0	0	0		nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:50057675-50130728:+|nuORF	nc|ENSG00000151883|Q8N3A8-2|PARP8	nc|ENSG00000151883|Q8N3A8-2|PARP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7718505859375	2	480.771657	959.528761	-0.12427	-5.9747E-05	0.4127	0.00019842	0.28843	0.00013867	480.7718095370194	13.613	0.43258	13.513	13.362	13.795	-0.099291					34	15	4	0	0	0	0.31164	1	518	518		7.1017	1.8711	1	278780			1308	4990	752	752	1560	1560					0.04737750206322744
APKSSKTEL	9	Unmodified	_APKSSKTEL_					0	0	0		nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:50057675-50130728:+|nuORF	nc|ENSG00000151883|Q8N3A8-2|PARP8	nc|ENSG00000151883|Q8N3A8-2|PARP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.77166748046875	2	480.771657	959.528761	-0.10782	-5.1835E-05	0.40195	0.00019324	0.29413	0.00014141	480.77180030245825	13.62	0.41329	13.552	13.416	13.829	-0.067495					38	14	4	0	0	0	0.043711	3	476	471;476;517		55.235	26.057	1	243320			1309	4990	752	752	1561;1562;1563	1562					0.04737750206322744
APKSSSGFSL	10	Unmodified	_APKSSSGFSL_					0	0	0		ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7559509277344	2	490.756007	979.497461	0.35014	0.00017183	-0.17522	-8.5989E-05	0.17492	8.5845E-05	490.7557853009023	35.572	1.1062	35.572	35.2	36.307	0					92	40	4	0	0	0	0.0012219	3	7164	7117;7164;7216		117.84	43.638	1	1745500			1310	11962	753	753	1564;1565;1566	1565					0.006891771722393969
APKSSSGFSL	10	Unmodified	_APKSSSGFSL_					0	0	0		ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7560729980469	2	490.756007	979.497461	0.34226	0.00016797	-0.13045	-6.4022E-05	0.21181	0.00010395	490.75579665701775	35.508	1.0442	35.59	35.189	36.233	0.082359					84	37	3	0	0	0	2.7564E-05	2	7110	7110;7162		139.78	65.582	1	2022600			1311	11962	753	753	1567;1568	1567					0.006891771722393969
APKSSSGFSL	10	Unmodified	_APKSSSGFSL_					0	0	0		ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7560729980469	2	490.756007	979.497461	0.037586	1.8445E-05	0.18862	9.2565E-05	0.2262	0.00011101	490.7559970898511	35.493	1.0408	35.579	35.204	36.244	0.086246					91	37	3	0	0	0	3.3863E-05	2	7090	7090;7138		135.86	38.836	1	2114600			1312	11962	753	753	1569;1570	1569					0.006891771722393969
APLAARTRT	9	Unmodified	_APLAARTRT_					0	0	0			REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.785400390625	2	478.785433	955.556313	0.21754	0.00010415	0.12745	6.1019E-05	0.34498	0.00016517	478.78545569488915	82.016	1.4155	82.016	81.586	83.001	0					135	53	4	0	0	0	0.28674	1	21367	21367		10.824	0	1	5941600	+		1313	20050	754	754	1571	1571					0.07675698257230579
APLAARTRT	9	Unmodified	_APLAARTRT_					0	0	0			REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7856140136719	2	478.785433	955.556313	0.11294	5.4075E-05	0.17339	8.3017E-05	0.28633	0.00013709	478.7854738798786	81.947	1.3592	82.016	81.507	82.866	0.068993					149	57	4	0	0	0	0.25314	2	21366	21316;21366		15.847	0	1	5139400	+		1314	20050	754	754	1572;1573	1573					0.07675698257230579
APLDHLPLN	9	Unmodified	_APLDHLPLN_					0	0	0		nc|ENSG00000172379|Q9HBZ2-2|ARNT2;ENSG00000172379|ENST00000303329|ARNT2	nc|ENSG00000172379|Q9HBZ2-2|ARNT2	nc|ENSG00000172379|Q9HBZ2-2|ARNT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.23974609375	2	495.274367	988.53418	0.25677	0.00012717	0.27559	0.00013649	0.53236	0.00026366	495.27442412006343	19.519	0.55484	19.519	19.294	19.849	0					32	19	2	0	0	0	0.25612	1	2232	2232		8.1555	0	1	63201			1315	6629	755	755	1574	1574					0.03945473788803611
APLDSIHSL	9	Unmodified	_APLDSIHSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.29266357421875	2	476.758549	951.502546	0.64378	0.00030693	-0.48351	-0.00023052	0.16026	7.6407E-05	476.75826247074724	48.222	0.23193	48.269	48.158	48.39	0.047523					11	8	2	0	0	0	0.2322	1	11038	11038		14.838	3.198	1	137900			1316	6378	756	756	1575	1575					0.024854810348642786
APLESAADRF	10	Unmodified	_APLESAADRF_					0	0	0			REV__ENST00000584717.1_1_17:80059560-80064242:-|nuORF	REV__ENST00000584717.1_1_17:80059560-80064242:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7636108398438	2	538.772188	1075.52982	0.17528	9.4439E-05	3.4907	0.0018807	3.666	0.0019751	539.2759114534192	14.577	0.22746	14.577	14.448	14.676	0					16	7	3	0	0	0	0.40403	1	757	757		2.7352	0.43246	1	47175	+		1317	22505	757	757	1576	1576					-0.0049203542478153395
APLGGRLRARG	11	Unmodified	_APLGGRLRARG_					0	0	0		ENST00000396946.8_1_7:2998153-3083527:-|nuORF	ENST00000396946.8_1_7:2998153-3083527:-|nuORF	ENST00000396946.8_1_7:2998153-3083527:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.34375	2	562.343981	1122.67341	0.20628	0.000116	-0.76416	-0.00042972	-0.55788	-0.00031372	562.3435873199479	80.295	3.1196	80.36	79.444	82.564	0.065094					520	132	5	0	0	0	0.46277	1	21471	21471		2.9952	0	1	13068000			1318	10126	758	758	1577	1577					0.11697856196815337
APLGGRLRARG	11	Unmodified	_APLGGRLRARG_					0	0	0		ENST00000396946.8_1_7:2998153-3083527:-|nuORF	ENST00000396946.8_1_7:2998153-3083527:-|nuORF	ENST00000396946.8_1_7:2998153-3083527:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3434448242188	2	562.343981	1122.67341	0.40698	0.00022886	-0.71299	-0.00040095	-0.30601	-0.00017208	562.343473781436	82.892	0.58913	82.872	82.517	83.106	-0.020584					61	22	3	0	0	0	0.46277	1	21621	21621		2.9952	0	1	1108300			1319	10126	758	758	1578	1578					0.11697856196815337
APLGRRLRQT	10	Unmodified	_APLGRRLRQT_					0	0	0			REV__ENSG00000167244|ENST00000416167|IGF2	REV__ENSG00000167244|ENST00000416167|IGF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.357177734375	2	584.357088	1166.69962	0.56524	0.0003303	-0.3772	-0.00022042	0.18804	0.00010988	584.3566966115507	84.274	0.24208	84.274	84.163	84.405	0					34	9	4	0	0	0	0.38773	1	22058	22058		5.7319	2.1354	1	1326700	+		1320	17372	759	759	1579	1579					0.12294125368293862
APLGRRLRQT	10	Unmodified	_APLGRRLRQT_					0	0	0			REV__ENSG00000167244|ENST00000416167|IGF2	REV__ENSG00000167244|ENST00000416167|IGF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3568725585938	2	584.357088	1166.69962	0.54901	0.00032082	-0.63088	-0.00036866	-0.081868	-4.784E-05	584.356552371031	84.781	0.58887	84.781	84.405	84.994	0					73	21	4	0	0	0	0.40262	1	22193	22193		2.9952	0	1	1255600	+		1321	17372	759	759	1580	1580					0.12294125368293862
APLGRRLRQT	10	Unmodified	_APLGRRLRQT_					0	0	0			REV__ENSG00000167244|ENST00000416167|IGF2	REV__ENSG00000167244|ENST00000416167|IGF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3572387695312	2	584.357088	1166.69962	0.50273	0.00029377	-0.51506	-0.00030098	-0.012331	-7.2054E-06	584.3565762588884	84.597	0.60403	84.677	84.394	84.998	0.080887					74	23	4	0	0	0	0.40262	1	22159	22159		2.9952	0.93549	1	912950	+		1322	17372	759	759	1581	1581					0.12294125368293862
APLHKKRG	8	Unmodified	_APLHKKRG_					0	0	0			REV__ENST00000477661.1_1_10:5005492-5009304:+|nuORF	REV__ENST00000477661.1_1_10:5005492-5009304:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2821350097656	2	453.785236	905.555919	0.064447	2.9245E-05	-3.181	-0.0014435	-3.1166	-0.0014143	453.78394581481587	41.467	0.2636	41.557	41.324	41.587	0.090252					14	9	2	0	0	0	0.34297	1	8922	8922		6.3541	3.4649	1	1301600	+		1323	21439	760	760	1582	1582					0.09936323328042818
APLHSIQN	8	Unmodified	_APLHSIQN_					0	0	0			REV__ENSG00000163827|ENST00000395905|LRRC2	REV__ENSG00000163827|ENST00000395905|LRRC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.7534484863281	2	440.237784	878.461016	-0.050881	-2.24E-05	-0.59811	-0.00026331	-0.64899	-0.00028571	440.2375839703686	28.505	0.64637	28.505	28.277	28.924	0					28	22	2	0	0	0	0.33995	1	5094	5094		15.768	5.5848	1	118830	+		1324	17094	761	761	1583	1583					0.01692345066192047
APLHVMVF	8	Unmodified	_APLHVMVF_					0	0	0		ENSG00000172296|ENST00000399002|SPTLC3;nc|ENSG00000172296|Q9NUV7-2|SPTLC3;ENST00000476791.1_1_20:12989915-13030000:+|nuORF	ENSG00000172296|ENST00000399002|SPTLC3	ENSG00000172296|ENST00000399002|SPTLC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7930908203125	2	457.251849	912.489145	-0.11002	-5.0308E-05	0.10057	4.5988E-05	-0.0094477	-4.32E-06	457.25200395122204	30.44	0.5602	30.467	30.109	30.669	0.027157					26	19	2	0	0	0	0.34147	1	5599	5599		2.8892	2.0956	1	158750			1325	6618	762	762	1584	1584					0.02939951721930356
APLLCIILLP	10	Unmodified	_APLLCIILLP_					0	0	0			REV__ENSG00000237524|ENST00000568484|TEX51	REV__ENSG00000237524|ENST00000568484|TEX51	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.341796875	2	533.340664	1064.66677	0.60712	0.0003238	-0.24599	-0.0001312	0.36113	0.00019261	533.340453879967	89.065	1.1914	89.065	88.584	89.776	0					192	61	5	0	0	0	0.39536	1	23711	23711		4.3292	2.485	1	4756000	+		1326	19156	763	763	1585	1585					0.13702782201266928
APLLCIILLP	10	Unmodified	_APLLCIILLP_					0	0	0			REV__ENSG00000237524|ENST00000568484|TEX51	REV__ENSG00000237524|ENST00000568484|TEX51	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3409423828125	2	533.340664	1064.66677	0.41796	0.00022292	-0.04323	-2.3057E-05	0.37473	0.00019986	533.3405756964123	88.795	1.4149	88.885	88.548	89.963	0.089203					227	80	5	0	0	0	0.39536	1	23698	23698		4.3292	2.485	1	5180400	+		1327	19156	763	763	1586	1586					0.13702782201266928
APLLCIILLP	10	Unmodified	_APLLCIILLP_					0	0	0			REV__ENSG00000237524|ENST00000568484|TEX51	REV__ENSG00000237524|ENST00000568484|TEX51	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3409423828125	2	533.340664	1064.66677	0.55665	0.00029688	-0.20088	-0.00010714	0.35577	0.00018975	533.3404989438249	88.954	1.3652	88.954	88.541	89.906	-0.00080872					221	77	5	0	0	0	0.40888	1	23663	23663		1.8442	1.8442	1	7051000	+		1328	19156	763	763	1587	1587					0.13702782201266928
APLLCIILLP	10	Unmodified	_APLLCIILLP_					0	0	0			REV__ENSG00000237524|ENST00000568484|TEX51	REV__ENSG00000237524|ENST00000568484|TEX51	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	533.340664	1064.66677	0.60712	0.0003238	-0.24599	-0.0001312	0.36113	0.00019261	533.340453879967	89.065	1.1914	89.065	88.584	89.776	0	0.097476	-0.00010161	NaN	4.3292	192	61	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4756000	+		1329	19156	763	763							0.13702782201266928
APLLCIILLP	10	Unmodified	_APLLCIILLP_					0	0	0			REV__ENSG00000237524|ENST00000568484|TEX51	REV__ENSG00000237524|ENST00000568484|TEX51	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	533.340664	1064.66677	0.41796	0.00022292	-0.04323	-2.3057E-05	0.37473	0.00019986	533.3405756964123	88.795	1.4149	88.885	88.548	89.963	0.089203	-0.083194	0.00011467	NaN	4.3292	227	80	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5180400	+		1330	19156	763	763							0.13702782201266928
APLLCIILLP	10	Unmodified	_APLLCIILLP_					0	0	0			REV__ENSG00000237524|ENST00000568484|TEX51	REV__ENSG00000237524|ENST00000568484|TEX51	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	533.340664	1064.66677	0.55665	0.00029688	-0.20088	-0.00010714	0.35577	0.00018975	533.3404989438249	88.954	1.3652	88.954	88.541	89.906	-0.00080872	-0.014282	-5.3486E-05	NaN	4.3292	221	77	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7051000	+		1331	19156	763	763							0.13702782201266928
APLLHALTAP	10	Unmodified	_APLLHALTAP_					0	0	0			REV__ENSG00000134595|ENST00000370536|SOX3	REV__ENSG00000134595|ENST00000370536|SOX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2539367675781	2	502.300384	1002.58622	0.33554	0.00016854	0.71079	0.00035703	1.0463	0.00052557	502.3006477480345	52.354	0.3853	52.354	52.023	52.408	0					18	13	2	0	0	0	0.3156	1	12209	12209		6.7232	0	1	187580	+		1332	15688	764	764	1588	1588					0.08502637202548158
APLLKKQTL	9	Unmodified	_APLLKKQTL_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;ENST00000375958.3_1_13:103498616-103506268:+|nuORF;nc|ENSG00000134899|P28715-3|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3316650390625	2	506.331685	1010.64882	0.081244	4.1136E-05	-0.027257	-1.3801E-05	0.053987	2.7335E-05	506.3315312613595	27.592	0.65403	27.592	27.354	28.008	0					45	22	3	0	0	0	0.0054984	1	4695	4695		86.332	42.474	1	331580			1333	3825	765	765	1589	1589					0.14391783270752967
APLLKKQTL	9	Unmodified	_APLLKKQTL_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;ENST00000375958.3_1_13:103498616-103506268:+|nuORF;nc|ENSG00000134899|P28715-3|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.3316345214844	2	506.331685	1010.64882	0.013564	6.8678E-06	0.09547	4.8339E-05	0.10903	5.5207E-05	506.33155406080766	27.568	0.57403	27.547	27.321	27.895	-0.021412					39	19	3	0	0	0	0.0054984	1	4692	4692		86.332	42.474	1	310540			1334	3825	765	765	1590	1590					0.14391783270752967
APLLKKQTL	9	Unmodified	_APLLKKQTL_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;ENST00000375958.3_1_13:103498616-103506268:+|nuORF;nc|ENSG00000134899|P28715-3|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.33160400390625	2	506.331685	1010.64882	0.0031006	1.5699E-06	0.10581	5.3573E-05	0.10891	5.5143E-05	506.331588848181	27.563	0.57485	27.551	27.318	27.893	-0.011562					38	19	3	0	0	0	0.0054984	1	4702	4702		86.332	42.474	1	322820			1335	3825	765	765	1591	1591					0.14391783270752967
APLLNPYTL	9	Unmodified	_APLLNPYTL_					0	0	0		ENSG00000099377|ENST00000297679|HSD3B7	ENSG00000099377|ENST00000297679|HSD3B7	ENSG00000099377|ENST00000297679|HSD3B7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.3033447265625	2	501.286943	1000.55933	0.48766	0.00024446	0.83648	0.00041931	1.3241	0.00066377	501.28740394181506	72.052	0.48889	72.108	71.922	72.411	0.056572					31	17	2	0	0	0	0.21303	1	18339	18339		21.747	3.6117	1	165590			1336	1489	766	766	1592	1592					0.059075285913763764
APLLPEEKLNL	11	Unmodified	_APLLPEEKLNL_					0	0	0			REV__ENST00000609967.5_1_20:2674291-2732741:+|nuORF	REV__ENST00000609967.5_1_20:2674291-2732741:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.8634643554688	2	618.863546	1235.71254	0.099785	6.1753E-05	-0.011045	-6.8351E-06	0.08874	5.4918E-05	618.8634826226782	53.839	0.79007	53.895	53.585	54.375	0.056255					78	29	4	0	0	0	0.44828	1	12777	12777		4.897	4.897	1	1360500	+		1337	14017	767	767	1593	1593					0.1041109891718861
APLLRGAVF	9	Unmodified	_APLLRGAVF_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2	nc|ENSG00000103197|P49815-4|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2895202636719	2	472.28982	942.565087	0.46947	0.00022172	-0.45965	-0.00021709	0.0098207	4.6382E-06	472.2894452491973	54.731	0.59915	54.731	54.462	55.061	0					40	21	3	0	0	0	0.16284	1	13030	13030		37.974	5.857	1	495850			1338	1817	768	768	1594	1594					0.09150671893701201
APLLRGAVF	9	Unmodified	_APLLRGAVF_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2	nc|ENSG00000103197|P49815-4|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	472.28982	942.565087	0.57628	0.00027217	-0.8268	-0.00039049	-0.25052	-0.00011832	472.2894674958492	54.857	0.76929	54.841	54.415	55.184	-0.015919	0.050764	-8.4485E-05	NaN	37.974	43	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	491110			1339	1817	768	768							0.09150671893701201
APLLRKTYF	9	Unmodified	_APLLRKTYF_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.8300170898438	2	554.829309	1107.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.875	1	41.875	41.375	42.375	0								0	0	0	0.060574	1	9065	9065		57.722	20.647	1				1340	1051	769	769	1595	1595					0.09454899127990757
APLLRKTYF	9	Unmodified	_APLLRKTYF_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.8284912109375	2	554.829309	1107.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.895	1	41.895	41.395	42.395	0								0	0	0	0.031491	1	9071	9071		66.457	30.33	1				1341	1051	769	769	1596	1596					0.09454899127990757
APLLRKVYL	9	Unmodified	_APLLRKVYL_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000486102.5_1_3:49728598-49742525:+|nuORF	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.291015625	2	536.847502	1071.68045	0.55497	0.00029794	0.75599	0.00040585	1.311	0.00070379	536.847840481136	44.323	0.48978	44.323	44.115	44.605	0					32	17	3	0	0	0	0.1939	1	9817	9817		30.637	18.996	1	452780			1342	5778	770	770	1597	1597					0.14747776024682935
APLLRKVYL	9	Unmodified	_APLLRKVYL_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000486102.5_1_3:49728598-49742525:+|nuORF	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2910766601562	2	536.847502	1071.68045	0.4748	0.0002549	0.83368	0.00044756	1.3085	0.00070246	536.8478857099988	44.139	0.47449	44.216	44.048	44.522	0.077518					39	17	3	0	0	0	0.10135	1	9768	9768		52.268	37.43	1	430750			1343	5778	770	770	1598	1598					0.14747776024682935
APLLRKVYL	9	Unmodified	_APLLRKVYL_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000486102.5_1_3:49728598-49742525:+|nuORF	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2910766601562	2	536.847502	1071.68045	0.46407	0.00024913	0.78884	0.00042349	1.2529	0.00067262	536.8477806549323	44.09	0.51564	44.174	43.995	44.511	0.083992					35	18	3	0	0	0	0.10135	1	9747	9747		52.268	36.421	1	370460			1344	5778	770	770	1599	1599					0.14747776024682935
APLLRLLPVS	10	Unmodified	_APLLRLLPVS_					0	0	0		ENST00000397117.5_1_3:10362382-10362535:-|nuORF	ENST00000397117.5_1_3:10362382-10362535:-|nuORF	ENST00000397117.5_1_3:10362382-10362535:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8001708984375	2	539.852784	1077.69102	0.41677	0.000225	-0.083481	-4.5067E-05	0.33329	0.00017993	539.8527745558748	69.535	0.5126	69.513	69.267	69.779	-0.022087					30	18	2	0	0	0	0.31691	1	17622	17622		5.7319	0	1	268500			1345	10131	771	771	1600	1600					0.15527758679127146
APLLRWVL	8	Unmodified	_APLLRWVL_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.3082275390625	2	484.308013	966.601472	0.31933	0.00015465	0.38844	0.00018812	0.70777	0.00034278	484.3080964513151	72.551	0.55967	72.551	72.267	72.827	0					50	20	3	0	0	0	0.065797	1	18488	18488		70.716	26.309	1	506460			1346	1560	772	772	1601	1601					0.11683548790404075
APLLRWVL	8	Unmodified	_APLLRWVL_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.3081359863281	2	484.308013	966.601472	0.39385	0.00019075	0.1863	9.0226E-05	0.58015	0.00028097	484.30794070628906	72.497	0.57279	72.551	72.271	72.843	0.054092					48	20	3	0	0	0	0.10069	1	18494	18494		60.39	31.903	1	448990			1347	1560	772	772	1602	1602					0.11683548790404075
APLLRWVL	8	Unmodified	_APLLRWVL_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	484.308013	966.601472	0.40922	0.00019819	0.38931	0.00018855	0.79853	0.00038673	484.30800992677666	72.594	0.37263	72.565	72.365	72.738	-0.029305	0.0090276	5.1849E-05	NaN	70.716	32	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289550			1348	1560	772	772							0.11683548790404075
APLLSQLQGG	10	Unmodified	_APLLSQLQGG_					0	0	0			REV__ENST00000507684.1_1_6:31976393-31978991:-|nuORF	REV__ENST00000507684.1_1_6:31976393-31978991:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2641296386719	2	492.279649	982.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.283	1	59.269	58.769	59.769	-0.014267								0	0	0	0.24599	1	14419	14419		34.402	0.21439	1		+		1349	21763	773	773	1603	1603					0.05277456443241135
APLPRSALL	9	Unmodified	_APLPRSALL_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7527770996094	2	469.295102	936.575651	0.7653	0.00035915	-1.0858	-0.00050956	-0.32051	-0.00015041	469.29451519221686	46.957	0.48277	47.011	46.877	47.36	0.054371					23	16	2	0	0	0	0.21538	1	10644	10644		20.415	0	1	270510			1350	6491	774	774	1604	1604					0.10482654548138726
APLQGRRA	8	Unmodified	_APLQGRRA_					0	0	0			REV__GPR119|p.S156Gfs*180|1|0.06|ENSG00000147262|chrX:130384982-130384983|-/CTCC|frameshift_variant	REV__GPR119|p.S156Gfs*180|1|0.06|ENSG00000147262|chrX:130384982-130384983|-/CTCC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7590637207031	2	434.759218	867.503883	-0.038131	-1.6578E-05	-0.20192	-8.7788E-05	-0.24005	-0.00010437	434.7591884155941	79.91	1.5855	79.882	79.226	80.812	-0.028923					103	58	3	0	0	0	0.45307	1	20810	20810		4.756	0	1	731140	+		1351	22691	775	775	1605	1605					0.06483159914273529
APLQKVSLA	9	Unmodified	_APLQKVSLA_					0	0	0		nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A	nc|ENSG00000138623|O75326-2|SEMA7A	nc|ENSG00000138623|O75326-2|SEMA7A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.8008117675781	2	463.78711	925.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.336	1	38.427	37.927	38.927	0.090881								0	0	0	0.24077	1	7982	7982		9.3474	0	1				1352	4167	776	776	1606	1606					0.0939094831123839
APLRPLLL	8	Unmodified	_APLRPLLL_					0	0	0			REV__ENST00000541952.1_1_11:64054130-64055396:+|nuORF	REV__ENST00000541952.1_1_11:64054130-64055396:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	446.8025207519531	2	446.802563	891.590573	0.3099	0.00013846	-0.2119	-9.4676E-05	0.098003	4.3788E-05	446.8023658799194	64.615	0.85436	64.707	64.445	65.299	0.09288					82	31	4	0	0	0	0.20019	1	16106	16106		42.968	0	1	1450800	+		1353	22132	777	777	1607	1607					0.14044146416131298
APLRPLLL	8	Unmodified	_APLRPLLL_					0	0	0			REV__ENST00000541952.1_1_11:64054130-64055396:+|nuORF	REV__ENST00000541952.1_1_11:64054130-64055396:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.8023986816406	2	446.802563	891.590573	0.30219	0.00013502	-0.2095	-9.3607E-05	0.092685	4.1412E-05	446.8023423135507	64.764	0.9569	64.755	64.443	65.4	-0.0095291					76	34	3	0	0	0	0.20019	2	16093	16093;16133		42.968	0	1	1384500	+		1354	22132	777	777	1608;1609	1608					0.14044146416131298
APLRPRRWW	9	Unmodified	_APLRPRRWW_					0	0	0			REV__ENST00000317040.11_1_19:17535475-17535995:+|nuORF	REV__ENST00000317040.11_1_19:17535475-17535995:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2383117675781	3	413.240353	1236.69923	-0.00060989	-2.5203E-07	-3.5496	-0.0014668	-3.5502	-0.0014671	413.2387159459149	30.5	0.63393	30.5	30.255	30.889	0					34	22	2	0	0	0	0.30459	1	5610	5610		8.1555	0.67846	1	102870	+		1355	19939	778	778	1610	1610					0.09034750439104755
APLRPRRWW	9	Unmodified	_APLRPRRWW_					0	0	0			REV__ENST00000317040.11_1_19:17535475-17535995:+|nuORF	REV__ENST00000317040.11_1_19:17535475-17535995:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	413.240353	1236.69923	0.27278	0.00011272	-3.683	-0.001522	-3.4102	-0.0014092	413.238840853388	30.543	0.54421	30.571	30.324	30.869	0.027948	0.030171	-0.00024619	NaN	8.1555	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124160	+		1356	19939	778	778							0.09034750439104755
APLRQYLE	8	Unmodified	_APLRQYLE_					0	0	0			REV__nc|ENSG00000090686|Q86UV5-7|USP48	REV__nc|ENSG00000090686|Q86UV5-7|USP48	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2395935058594	2	495.274367	988.53418	0.40217	0.00019918	0.12303	6.0932E-05	0.5252	0.00026012	495.27439796363313	19.609	0.5679	19.553	19.309	19.877	-0.055691					33	19	2	0	0	0	0.3433	1	2264	2264		6.2058	0.9089	1	61688	+		1357	14049	779	779	1611	1611					0.03945473788803611
APLSLLRAP	9	Unmodified	_APLSLLRAP_					0	0	0			REV__ENST00000475131.1_1_22:44224871-44234759:-|nuORF	REV__ENST00000475131.1_1_22:44224871-44234759:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7525939941406	2	469.295102	936.575651	0.37369	0.00017537	-0.47934	-0.00022495	-0.10565	-4.9579E-05	469.2948068158471	47.001	0.46138	47.001	46.84	47.302	0					24	15	2	0	0	0	0.20881	1	10671	10671		16.149	0	1	229450	+		1358	21403	780	780	1612	1612					0.10482654548127357
APLSTHEAV	9	Unmodified	_APLSTHEAV_					0	0	0			REV__ENST00000565846.2_1_15:56485023-56485380:-|nuORF	REV__ENST00000565846.2_1_15:56485023-56485380:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.2770080566406	2	462.742899	923.471246	0.21532	9.9636E-05	0.045061	2.0852E-05	0.26038	0.00012049	462.74284823739794	39.368	0.50002	39.467	39.236	39.736	0.099403					37	17	3	0	0	0	0.24739	1	8329	8329		13.508	0	1	559510	+		1359	22363	781	781	1613	1613					0.006449080007541852
APLSTKAK	8	Unmodified	_APLSTKAK_					0	0	0			REV__ENST00000530329.1_1_11:61112942-61113484:+|nuORF	REV__ENST00000530329.1_1_11:61112942-61113484:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.7524719238281	2	408.252903	814.491253	0.10818	4.4164E-05	-2.5063	-0.0010232	-2.3981	-0.00097903	408.2514950940447	63.857	0.71149	63.857	63.474	64.185	0					61	25	3	0	0	0	0.32778	1	15724	15724		9.3474	3.587	1	131460	+		1360	16465	782	782	1614	1614					0.07658703731374317
APLSTSMK	8	Unmodified	_APLSTSMK_					0	0	0		ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A	ENSG00000092421|ENST00000343348|SEMA6A	ENSG00000092421|ENST00000343348|SEMA6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2579040527344	2	417.723121	833.431689	0.17245	7.2037E-05	-0.3728	-0.00015573	-0.20035	-8.369E-05	417.7228308435472	27.007	0.46861	26.996	26.797	27.266	-0.01156					20	16	2	0	0	0	0.34046	1	4520	4520		14.582	2.0501	1	65547			1361	1423	783	783	1615	1615					0.008310647256848824
APLTQLAR	8	Unmodified	_APLTQLAR_					0	0	0		ENST00000592871.1_1_19:36239538-36243735:+|nuORF;ENST00000590706.6_1_19:36239538-36244244:+|nuORF	ENST00000592871.1_1_19:36239538-36243735:+|nuORF	ENST00000592871.1_1_19:36239538-36243735:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.77972412109375	2	435.263802	868.513051	0.21002	9.1416E-05	-0.51728	-0.00022516	-0.30726	-0.00013374	435.2633985043308	37.643	0.47066	37.643	37.424	37.895	0					27	16	2	0	0	0	0.32435	1	7793	7793		11.64	4.9171	1	186470			1362	12174	784	784	1616	1616					0.07353508479945958
APMIKKIAF	9	Oxidation (M)	_APM(Oxidation (M))IKKIAF_		APM(1)IKKIAF		APM(61)IKKIAF	0	0	1		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8070678710938	2	517.806988	1033.59942	0.39635	0.00020523	-0.14101	-7.3014E-05	0.25534	0.00013222	517.8067609275836	38.084	1.1388	38.084	37.735	38.873	0					89	40	4	0	0	0	0.027237	1	7953	7953		61.357	61.357	1	1746300			1363	1153	785	785	1617	1617		137			0.08396751990289886
APMIKKIAF	9	Oxidation (M)	_APM(Oxidation (M))IKKIAF_		APM(1)IKKIAF		APM(61)IKKIAF	0	0	1		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8070068359375	2	517.806988	1033.59942	0.36803	0.00019057	-0.20997	-0.00010872	0.15806	8.1844E-05	517.8066531559625	37.992	1.1967	38.083	37.718	38.915	0.090881					85	43	3	0	0	0	0.027237	1	7906	7906		61.357	61.357	1	1608300			1364	1153	785	785	1618	1618		137			0.08396751990289886
APMIKKIAF	9	Oxidation (M)	_APM(Oxidation (M))IKKIAF_		APM(1)IKKIAF		APM(61)IKKIAF	0	0	1		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8069458007812	2	517.806988	1033.59942	0.24375	0.00012622	-0.14007	-7.2528E-05	0.10369	5.3689E-05	517.806738358676	37.935	1.1556	38.033	37.682	38.838	0.097527					88	41	3	0	0	0	0.027237	1	7889	7889		61.357	40.943	1	1557300			1365	1153	785	785	1619	1619		137			0.08396751990289886
APMQQKLL	8	Unmodified	_APMQQKLL_					0	0	0		nc|ENSG00000160219|Q8WWW8|GAB3;ENSG00000160219|ENST00000424127|GAB3	nc|ENSG00000160219|Q8WWW8|GAB3	nc|ENSG00000160219|Q8WWW8|GAB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2742614746094	2	464.767863	927.521173	-0.021093	-9.8033E-06	0.046978	2.1834E-05	0.025885	1.2031E-05	464.7679103034795	38.737	1.2336	38.828	38.427	39.661	0.091228					54	44	2	0	0	0	0.33995	1	8244	8244		10.183	0	1	185570			1366	5449	786	786	1620	1620					0.05451319405074173
APMQQKLL	8	Unmodified	_APMQQKLL_					0	0	0		nc|ENSG00000160219|Q8WWW8|GAB3;ENSG00000160219|ENST00000424127|GAB3	nc|ENSG00000160219|Q8WWW8|GAB3	nc|ENSG00000160219|Q8WWW8|GAB3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	464.767863	927.521173	-0.37543	-0.00017449	0.52762	0.00024522	0.15219	7.0731E-05	464.7681525198054	38.96	0.80722	38.96	38.434	39.242	0	0.12621	0.00037253	NaN	10.183	42	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213370			1367	5449	786	786							0.05451319405074173
APMSAAHQL	9	Oxidation (M)	_APM(Oxidation (M))SAAHQL_		APM(1)SAAHQL		APM(54)SAAHQL	0	0	1		ENST00000537488.1_1_12:7048306-7050940:+|nuORF;ENSG00000111676|ENST00000396684|ATN1	ENST00000537488.1_1_12:7048306-7050940:+|nuORF	ENST00000537488.1_1_12:7048306-7050940:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2198181152344	2	471.229102	940.443651	0.12763	6.0142E-05	-0.088308	-4.1613E-05	0.03932	1.8529E-05	471.22897535181096	19.281	0.60334	19.225	19.048	19.652	-0.055693					35	20	2	0	0	0	0.047483	1	2192	2192		53.833	26.949	1	118190			1368	2381	787	787	1621	1621		293			-0.028953185311252128
APNGVRNGL	9	Unmodified	_APNGVRNGL_					0	0	0		ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.8645935058594	2	449.248683	896.482814	0.14107	6.3378E-05	0.26235	0.00011786	0.40342	0.00018124	449.248732711727	22.928	0.54576	22.883	22.76	23.305	-0.044867					29	19	2	0	0	0	0.25988	1	3302	3302		3.9444	0.66309	1	55354			1369	3294	788	788	1622	1622					0.03043149814766366
APNLGRSFHIL	11	Unmodified	_APNLGRSFHIL_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L;nc|ENSG00000085415|Q96EE3|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.899658203125	3	408.899773	1223.67749	-0.097025	-3.9673E-05	0.22524	9.2102E-05	0.12822	5.2429E-05	408.8997414839807	51.897	0.73548	51.897	51.619	52.354	0					95	26	5	0	0	0	0.043109	2	12126	12126;12176		45.603	27.739	1	1807500			1370	1257	789	789	1623;1624	1623					0.07459900899880267
APNLGRSFHIL	11	Unmodified	_APNLGRSFHIL_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L;nc|ENSG00000085415|Q96EE3|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.899658203125	3	408.899773	1223.67749	0.085375	3.491E-05	-0.047121	-1.9268E-05	0.038254	1.5642E-05	408.89966135328814	51.84	0.63127	51.891	51.651	52.282	0.050571					82	22	5	0	0	0	0.0072124	2	12113	12113;12164		55.839	36.213	1	2351600			1371	1257	789	789	1625;1626	1625					0.07459900899880267
APNLGRSFHIL	11	Unmodified	_APNLGRSFHIL_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L;nc|ENSG00000085415|Q96EE3|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.8997497558594	3	408.899773	1223.67749	-0.15498	-6.337E-05	0.2707	0.00011069	0.11572	4.7319E-05	408.89979474741807	52.03	0.72785	52.029	51.683	52.411	-0.00080872					92	26	5	0	0	0	0.0083345	2	12161	12161;12211		54.259	31.484	1	2005500			1372	1257	789	789	1627;1628	1627					0.07459900899880267
APNLKILNL	9	Unmodified	_APNLKILNL_					0	0	0		ENSG00000162231|ENST00000294172|NXF1;nc|ENSG00000162231|Q9UBU9-2|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.316162109375	2	498.316035	994.617516	0.43217	0.00021536	-0.6608	-0.00032929	-0.22863	-0.00011393	498.31565924280045	62.345	0.69617	62.345	62.022	62.718	0					55	25	3	0	0	0	0.010453	1	15376	15376		78.728	30.979	1	489740			1373	5553	790	790	1629	1629					0.11999210236660929
APNLKILNL	9	Unmodified	_APNLKILNL_					0	0	0		ENSG00000162231|ENST00000294172|NXF1;nc|ENSG00000162231|Q9UBU9-2|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3160095214844	2	498.316035	994.617516	0.34768	0.00017325	-0.61382	-0.00030588	-0.26614	-0.00013262	498.31568779845594	62.216	0.95453	62.313	61.978	62.932	0.096985					63	34	3	0	0	0	0.016723	1	15351	15351		69.105	21.356	1	501680			1374	5553	790	790	1630	1630					0.11999210236660929
APNLKILNL	9	Unmodified	_APNLKILNL_					0	0	0		ENSG00000162231|ENST00000294172|NXF1;nc|ENSG00000162231|Q9UBU9-2|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.31585693359375	2	498.316035	994.617516	0.38593	0.00019232	-0.75689	-0.00037717	-0.37096	-0.00018485	498.3156916030107	62.28	0.74969	62.272	61.955	62.705	-0.0085564					60	27	3	0	0	0	0.014888	1	15362	15362		71.922	21.989	1	452820			1375	5553	790	790	1631	1631					0.11999210236660929
APNNNRFMYL	10	Unmodified	_APNNNRFMYL_					0	0	0			REV__ENSG00000218336|ENST00000511685|TENM3	REV__ENSG00000218336|ENST00000511685|TENM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2383117675781	3	413.869485	1238.58663	0.026366	1.0912E-05	2.3797	0.00098489	2.4061	0.00099581	413.8706364723591	30.475	0.45395	30.475	30.194	30.648	0					34	15	3	0	0	0	0.32033	1	5610	5610		4.1895	1.5583	1	132500	+		1376	19087	791	791	1632	1632					-0.02312311139871781
APNNYKEP	8	Unmodified	_APNNYKEP_					0	0	0			REV__nc|ENSG00000141030|Q9UNS2-2|COPS3	REV__nc|ENSG00000141030|Q9UNS2-2|COPS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2723693847656	2	466.727249	931.439946	-0.097542	-4.5526E-05	0.24946	0.00011643	0.15192	7.0906E-05	466.7272547709736	28.356	0.58175	28.357	28.104	28.686	0.0004673					37	20	3	0	0	0	0.34353	1	5022	5022		2.0598	0.57785	1	264320	+		1377	16063	792	792	1633	1633					-0.028516650333358484
APNQRRRLLL	10	Unmodified	_APNQRRRLLL_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.9263000488281	3	412.926434	1235.75747	-0.1626	-6.7142E-05	-0.13696	-5.6553E-05	-0.29956	-0.00012369	412.9265301608847	25.483	1.4368	25.483	25.091	26.528	0					129	49	5	0	0	0	0.026871	3	4051	4002;4051;4093		79.596	79.596	1	3474900			1378	7048	793	793	1634;1635;1636	1635					0.14902387293750508
APNQRRRLLL	10	Unmodified	_APNQRRRLLL_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.8859252929688	2	618.886013	1235.75747	0.12406	7.6779E-05	-0.17608	-0.00010898	-0.052022	-3.2196E-05	618.8858832126402	25.505	0.47562	25.505	25.239	25.714	0					39	15	3	0	0	0	0.40106	1	4049	4049		3.2813	0.54611	1	229920			1379	7048	793	793	1637	1637					0.14902387293750508
APNQRRRLLL	10	Unmodified	_APNQRRRLLL_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.9263000488281	3	412.926434	1235.75747	-0.036669	-1.5142E-05	-0.17407	-7.1879E-05	-0.21074	-8.702E-05	412.92650899264487	25.538	1.4518	25.482	25.134	26.585	-0.055931					136	50	5	0	0	0	0.14015	2	4037	4037;4082		47.594	33.376	1	3650300			1380	7048	793	793	1638;1639	1638					0.14902387293750508
APNQRRRLLL	10	Unmodified	_APNQRRRLLL_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.8861694335938	2	618.886013	1235.75747	-0.16175	-0.00010011	0.23289	0.00014413	0.071135	4.4024E-05	618.8860997641012	25.569	0.4541	25.514	25.25	25.704	-0.055931					38	15	3	0	0	0	0.38773	2	4061	4061;4109		5.7319	2.7366	1	251070			1381	7048	793	793	1640;1641	1640					0.14902387293750508
APNQRRRLLL	10	Unmodified	_APNQRRRLLL_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.92633056640625	3	412.926434	1235.75747	-0.078822	-3.2548E-05	-0.11618	-4.7975E-05	-0.195	-8.0523E-05	412.92655618991876	25.58	1.3122	25.548	25.181	26.493	-0.031408					133	46	6	0	0	0	0.09872	2	4089	4041;4089		55.503	55.503	1	3906600			1382	7048	793	793	1642;1643	1643					0.14902387293750508
APNQRRRLLL	10	Unmodified	_APNQRRRLLL_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.8860473632812	2	618.886013	1235.75747	-0.081344	-5.0343E-05	-0.056937	-3.5237E-05	-0.13828	-8.558E-05	618.8858664072956	25.602	0.52933	25.571	25.294	25.824	-0.03141					40	18	3	0	0	0	0.37133	1	4085	4085		8.7454	5.7502	1	226320			1383	7048	793	793	1644	1644					0.14902387293750508
APNYRLKSL	9	Unmodified	_APNYRLKSL_					0	0	0		ENSG00000187325|ENST00000341864|TAF9B;ENSG00000273841|ENST00000217893|TAF9	ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7572021484375	2	531.308741	1060.60293	0.57879	0.00030752	0.13688	7.2724E-05	0.71567	0.00038024	531.3087082347856	31.949	0.47877	31.949	31.772	32.251	0					28	16	2	0	0	0	0.20381	1	5995	5995		23.79	4.4278	1	346280			1384	7676	794	794	1645	1645					0.07505138088527019
APNYRLKSL	9	Unmodified	_APNYRLKSL_					0	0	0		ENSG00000187325|ENST00000341864|TAF9B;ENSG00000273841|ENST00000217893|TAF9	ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7570190429688	2	531.308741	1060.60293	0.52868	0.00028089	0.040641	2.1593E-05	0.56932	0.00030249	531.3087838232113	31.864	0.50922	31.907	31.795	32.305	0.042364					26	17	2	0	0	0	0.24993	1	5978	5978		13.042	1.5478	1	557040			1385	7676	794	794	1646	1646					0.07505138088527019
APNYRLKSL	9	Unmodified	_APNYRLKSL_					0	0	0		ENSG00000187325|ENST00000341864|TAF9B;ENSG00000273841|ENST00000217893|TAF9	ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3090209960938	2	531.308741	1060.60293	0.51337	0.00027276	0.22635	0.00012026	0.73972	0.00039302	531.3087201971391	31.955	0.51355	31.996	31.696	32.21	0.040991					27	17	2	0	0	0	0.053988	1	6040	6040		51.415	22.921	1	522830			1386	7676	794	794	1647	1647					0.07505138088527019
APPEYHRKAV	10	Unmodified	_APPEYHRKAV_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3169555664062	2	584.317097	1166.61964	0.031591	1.8459E-05	0.13016	7.6052E-05	0.16175	9.4511E-05	584.3170083622795	15.091	0.99712	15.091	14.845	15.842	0					104	34	4	0	0	0	0.092344	3	937	890;937;990		49.742	40.198	1	423170			1387	7557	795	795	1648;1649;1650	1649					0.04299638974453046
APPEYHRKAV	10	Unmodified	_APPEYHRKAV_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3169555664062	2	584.317097	1166.61964	0.052175	3.0487E-05	0.046038	2.6901E-05	0.098213	5.7387E-05	584.3170446122062	15.194	0.96845	15.084	14.847	15.816	-0.10981					94	33	4	0	0	0	0.11678	4	973	928;973;1020;1079		44.392	37.762	1	366380			1388	7557	795	795	1651;1652;1653;1654	1652					0.04299638974453046
APPEYHRKAV	10	Unmodified	_APPEYHRKAV_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3172607421875	2	584.317097	1166.61964	0.051193	2.9913E-05	0.095623	5.5874E-05	0.14682	8.5787E-05	584.3170266352301	15.207	0.88026	15.142	14.984	15.864	-0.064413					82	29	4	0	0	0	0.049822	3	942	942;986;1042		59.052	46.812	1	413180			1389	7557	795	795	1655;1656;1657	1655					0.04299638974453046
APPPGFRDN	9	Unmodified	_APPPGFRDN_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.2839660644531	2	485.740691	969.466829	-0.055546	-2.6981E-05	2.5101	0.0012193	2.4546	0.0011923	485.7424283855764	14.881	0.10615	14.881	14.819	14.925	0					6	3	2	0	0	0	0.25417	1	854	854		8.5933	0	1	23075			1390	4755	796	796	1658	1658					-0.019125564221440072
APPPPAHAL	9	Unmodified	_APPPPAHAL_					0	0	0		ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.7450866699219	2	435.745245	869.475937	-0.19574	-8.5292E-05	0.48539	0.00021151	0.28966	0.00012622	435.7451688041535	27.27	1.2843	27.248	26.839	28.123	-0.021412					103	44	3	0	0	0	0.041522	2	4580	4574;4580		56.048	10.298	1	549260			1391	7147	797	797	1659;1660	1660					0.03597836934170573
APPPPAHAL	9	Unmodified	_APPPPAHAL_					0	0	0		ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	ENSG00000179862|ENST00000372638|CITED4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.93475341796875	2	435.745245	869.475937	-0.19353	-8.4329E-05	0.64636	0.00028165	0.45283	0.00019732	435.74521879804934	27.286	1.2176	27.274	26.928	28.146	-0.011562					103	42	4	0	0	0	0.19319	1	4685	4685		28.173	0	1	588890			1392	7147	797	797	1661	1661					0.03597836934170573
APPQPSGSRPD	11	Unmodified	_APPQPSGSRPD_					0	0	0		nc|ENSG00000004777|O14559-10|ARHGAP33;ENSG00000004777|ENST00000007510|ARHGAP33;nc|ENSG00000004777|O14559-11|ARHGAP33	nc|ENSG00000004777|O14559-10|ARHGAP33	nc|ENSG00000004777|O14559-10|ARHGAP33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3117065429688	2	554.772719	1107.53089	0.422	0.00023411	-1.3887	-0.00077039	-0.96666	-0.00053628	554.7718846383494	35.795	0.57356	35.878	35.598	36.171	0.082355					33	20	2	0	0	0	0.33134	1	7176	7176		6.1918	1.4358	1	412200			1393	313	798	798	1662	1662					-0.01857821055864406
APPRLLPVHTF	11	Unmodified	_APPRLLPVHTF_					0	0	0		ENST00000372663.8_1_9:131483176-131483467:-|nuORF	ENST00000372663.8_1_9:131483176-131483467:-|nuORF	ENST00000372663.8_1_9:131483176-131483467:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.21875	3	416.580152	1246.71863	0.18595	7.7462E-05	-0.47723	-0.0001988	-0.29128	-0.00012134	416.5799483405967	38.208	0.71516	38.305	38.093	38.808	0.097527					40	25	2	0	0	0	0.33263	1	7932	7932		3.8459	0.52627	1	147610			1394	9849	799	799	1663	1663					0.10513661939353369
APPRPGSSF	9	Unmodified	_APPRPGSSF_					0	0	0		ENSG00000198231|ENST00000389924|DDX42;DDX42|p.I464Mfs*8|1|0.28|ENSG00000198231|chr17:63811166-63811166|T/-|frameshift_variant;nc|ENSG00000198231|Q86XP3-2|DDX42	ENSG00000198231|ENST00000389924|DDX42	ENSG00000198231|ENST00000389924|DDX42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.1944580078125	2	458.237784	914.461016	-0.2651	-0.00012148	-0.3939	-0.0001805	-0.659	-0.00030198	458.23776078625013	28.161	1.0544	28.161	27.763	28.817	0					61	36	3	0	0	0	0.19686	1	4860	4860		31.268	3.6395	1	392660			1395	8054	800	800	1664	1664					0.0003634506618936939
APPVLCQMIPV	11	Unmodified	_APPVLCQMIPV_					0	0	0		nc|ENSG00000172059|O14901-2|KLF11;ENSG00000172059|ENST00000305883|KLF11	nc|ENSG00000172059|O14901-2|KLF11	nc|ENSG00000172059|O14901-2|KLF11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3175048828125	2	584.316863	1166.61917	0.051193	2.9913E-05	0.49695	0.00029038	0.54815	0.00032029	584.3170266352301	15.207	0.88026	15.142	14.984	15.864	-0.064413					82	29	4	0	0	0	0.46475	1	1095	1095		2.7352	0.23671	1	413180			1396	6602	801	801	1665	1665					0.042527599387312875
APQAPAARAL	10	Unmodified	_APQAPAARAL_					0	0	0		ENST00000164227.9_1_19:45252055-45254595:+|nuORF	ENST00000164227.9_1_19:45252055-45254595:+|nuORF	ENST00000164227.9_1_19:45252055-45254595:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.25628662109375	2	483.279983	964.545414	0.31406	0.00015178	0.14872	7.1873E-05	0.46278	0.00022365	483.2800415810748	30.386	0.421	30.414	30.131	30.552	0.027946					23	14	2	0	0	0	0.27979	1	5536	5536		27.629	3.6082	1	101000			1397	8783	802	802	1666	1666					0.06172295882913659
APQAVGSGIP	10	Unmodified	_APQAVGSGIP_					0	0	0		ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-4|CLCN2;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7806701660156	2	448.745442	895.476331	0.30188	0.00013547	-3.1183	-0.0013993	-2.8164	-0.0012638	448.74401152551377	21.303	0.50848	21.254	21.066	21.574	-0.049606					27	17	2	0	0	0	0.31237	1	2803	2803		16.149	2.2431	1	73566			1398	2589	803	803	1667	1667					0.024412118633904356
APQNKPEL	8	Unmodified	_APQNKPEL_					0	0	0		ENSG00000065809|ENST00000181796|FAM107B;ENST00000475858.1_1_10:14563191-14564038:-|nuORF;nc|ENSG00000065809|Q9H098|FAM107B	ENSG00000065809|ENST00000181796|FAM107B	ENSG00000065809|ENST00000181796|FAM107B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.78045654296875	2	448.745442	895.476331	0.31297	0.00014044	-1.8489	-0.00082966	-1.5359	-0.00068922	448.7438906687239	21.203	0.51868	21.203	21.026	21.545	0					31	17	3	0	0	0	0.33293	1	2771	2771		14.838	0	1	62920			1399	825	804	804	1668	1668					0.024412118633676982
APQRQFLELYK	11	Unmodified	_APQRQFLELYK_					0	0	0			REV__ENSG00000162694|ENST00000370114|EXTL2	REV__ENSG00000162694|ENST00000370114|EXTL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2742614746094	3	464.925988	1391.75613	-0.15139	-7.0384E-05	-1.4919	-0.00069363	-1.6433	-0.00076401	465.26009580015585	39.094	0.71505	39.186	38.862	39.577	0.09267					40	25	2	0	0	0	0.44088	1	8244	8244		5.8681	1.7515	1	285130	+		1400	17000	805	805	1669	1669					0.07592708414313165
APQRSQSPL	9	Unmodified	_APQRSQSPL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.26715087890625	2	492.267073	982.519593	0.4271	0.00021025	-0.14966	-7.3675E-05	0.27744	0.00013657	492.26695043481436	20.487	0.90094	20.487	20.207	21.108	0					75	31	4	0	0	0	0.0045319	2	2569	2517;2569		90.135	44.395	1	494070			1401	4992	806	806	1670;1671	1671					0.027634016406636874
APQRSQSPL	9	Unmodified	_APQRSQSPL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.26702880859375	2	492.267073	982.519593	0.6407	0.00031539	-0.37533	-0.00018476	0.26536	0.00013063	492.26681960992937	20.672	0.82826	20.562	20.322	21.15	-0.11003					65	28	3	0	0	0	0.015027	1	2651	2651		71.708	27.726	1	590900			1402	4992	806	806	1672	1672					0.027634016406636874
APQRSQSPL	9	Unmodified	_APQRSQSPL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2671203613281	2	492.267073	982.519593	0.61514	0.00030282	-0.33025	-0.00016257	0.2849	0.00014025	492.26681959293995	20.557	0.85909	20.504	20.229	21.088	-0.05291					84	30	4	0	0	0	0.0054984	1	2594	2594		86.332	36.399	1	488740			1403	4992	806	806	1673	1673					0.027634016406636874
APQRVRVTL	9	Unmodified	_APQRVRVTL_					0	0	0		nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7;ENST00000549462.1_1_12:53591166-53600997:-|nuORF	nc|ENSG00000139626|P26010-2|ITGB7	nc|ENSG00000139626|P26010-2|ITGB7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3222045898438	2	520.322183	1038.62981	0.40047	0.00020837	-0.2373	-0.00012347	0.16318	8.4904E-05	520.3220463665145	29.52	0.73173	29.533	29.244	29.976	0.012266					51	24	3	0	0	0	0.16283	1	5293	5293		29.082	8.628	1	499870			1404	4250	807	807	1674	1674					0.11204246699708165
APQRVRVTL	9	Unmodified	_APQRVRVTL_					0	0	0		nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7;ENST00000549462.1_1_12:53591166-53600997:-|nuORF	nc|ENSG00000139626|P26010-2|ITGB7	nc|ENSG00000139626|P26010-2|ITGB7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.322265625	2	520.322183	1038.62981	0.15168	7.8925E-05	-0.097373	-5.0665E-05	0.054311	2.8259E-05	520.3221230816591	29.538	0.52147	29.551	29.329	29.85	0.013474					39	17	3	0	0	0	0.17277	1	5304	5304		27.629	10.516	1	562240			1405	4250	807	807	1675	1675					0.11204246699708165
APQRVRVTL	9	Unmodified	_APQRVRVTL_					0	0	0		nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7;ENST00000549462.1_1_12:53591166-53600997:-|nuORF	nc|ENSG00000139626|P26010-2|ITGB7	nc|ENSG00000139626|P26010-2|ITGB7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	520.322183	1038.62981	0.59899	0.00031167	-0.5962	-0.00031022	0.0027825	1.4478E-06	520.3218719164199	29.581	0.62103	29.581	29.324	29.945	0	0.026445	-0.00020124	NaN	29.082	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	481450			1406	4250	807	807							0.11204246699708165
APQSAHAAF	9	Unmodified	_APQSAHAAF_					0	0	0		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2633361816406	2	450.222134	898.429715	-0.031613	-1.4233E-05	0.5941	0.00026748	0.56249	0.00025324	450.2222814920603	23.067	0.51734	23.067	22.845	23.362	0					33	17	3	0	0	0	0.22143	1	3306	3306		24.991	5.552	1	112340			1407	6046	808	808	1676	1676					-0.023562279679140374
APQSAHAAF	9	Unmodified	_APQSAHAAF_					0	0	0		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.26361083984375	2	450.222134	898.429715	-0.018076	-8.1382E-06	0.72056	0.00032441	0.70248	0.00031627	450.22230630494045	23.138	0.5801	23.05	22.853	23.433	-0.087608					30	20	2	0	0	0	0.16853	1	3384	3384		38.176	12.776	1	130970			1408	6046	808	808	1677	1677					-0.023562279679140374
APQSAHAAF	9	Unmodified	_APQSAHAAF_					0	0	0		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.26361083984375	2	450.222134	898.429715	0.16041	7.2219E-05	0.33478	0.00015072	0.49518	0.00022294	450.2221185749761	23.117	0.57211	23.072	22.898	23.47	-0.044865					33	20	2	0	0	0	0.13643	1	3374	3374		45.7	13.394	1	114800			1409	6046	808	808	1678	1678					-0.023562279679140374
APQSFRAEL	9	Unmodified	_APQSFRAEL_					0	0	0		chr3:155829755-155829856|505|14.1|0.8|4.14|-|ENST00000644855|SLC33A1,SLC33A1;ENSG00000169359|ENST00000643144|SLC33A1	chr3:155829755-155829856|505|14.1|0.8|4.14|-|ENST00000644855|SLC33A1,SLC33A1	chr3:155829755-155829856|505|14.1|0.8|4.14|-|ENST00000644855|SLC33A1,SLC33A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7696838378906	2	509.769448	1017.52434	0.52884	0.00026958	-0.039636	-2.0205E-05	0.4892	0.00024938	509.76940834122314	40.5	0.81759	40.5	40.193	41.01	0					78	29	4	0	0	0	0.0078933	1	8643	8643		79.427	41.251	1	1067100			1410	160	809	809	1679	1679					0.01628285783431238
APQSGGARELL	11	Unmodified	_APQSGGARELL_					0	0	0			REV__nc|ENSG00000165915|Q96H72-2|SLC39A13	REV__nc|ENSG00000165915|Q96H72-2|SLC39A13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.33251953125	2	549.798737	1097.58292	0.4228	0.00023245	-0.31881	-0.00017528	0.10398	5.7171E-05	549.7982592268737	33.41	0.71639	33.41	33.091	33.808	0					39	25	2	0	0	0	0.32813	1	6465	6465		12.175	0.65687	1	327190	+		1411	17276	810	810	1680	1680					0.03803342357900874
APQSLILKL	9	Unmodified	_APQSLILKL_					0	0	0		nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.8184814453125	2	491.81841	981.622267	0.24913	0.00012253	-0.13527	-6.653E-05	0.11386	5.5998E-05	491.8183069958499	59.34	0.59395	59.34	58.996	59.59	0					44	20	3	0	0	0	0.063898	1	14464	14464		47.732	12.8	1	500920			1412	2619	811	811	1681	1681					0.1307209437942447
APQSLILKL	9	Unmodified	_APQSLILKL_					0	0	0		nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.8184814453125	2	491.81841	981.622267	0.34095	0.00016769	-0.072192	-3.5505E-05	0.26876	0.00013218	491.81825236438556	59.182	0.50241	59.274	59.015	59.517	0.091301					40	17	3	0	0	0	0.059067	1	14413	14413		49.527	7.5717	1	757870			1413	2619	811	811	1682	1682					0.1307209437942447
APQSLILKL	9	Unmodified	_APQSLILKL_					0	0	0		nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.8184509277344	2	491.81841	981.622267	0.48009	0.00023611	-0.18834	-9.2627E-05	0.29175	0.00014349	491.8182521953756	59.318	0.53479	59.304	59.031	59.566	-0.014267					40	18	3	0	0	0	0.032589	1	14444	14444		59.368	9.8141	1	613180			1414	2619	811	811	1683	1683					0.1307209437942447
APQTASPPK	9	Unmodified	_APQTASPPK_					0	0	0			REV__ENSG00000283758|ENST00000640449|PMIS2	REV__ENSG00000283758|ENST00000640449|PMIS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.78057861328125	2	448.745442	895.476331	0.35005	0.00015708	-3.5827	-0.0016077	-3.2326	-0.0014506	448.7437448433387	21.361	0.4266	21.26	21.101	21.528	-0.10034					26	14	2	0	0	0	0.1939	1	2815	2815		30.637	3.7529	1	86803	+		1415	19371	812	812	1684	1684					0.02441211863379067
APQTVSARPAS	11	Unmodified	_APQTVSARPAS_					0	0	0			REV__ENST00000394170.6_1_7:99102601-99103658:+|nuORF	REV__ENST00000394170.6_1_7:99102601-99103658:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.291748046875	2	542.790912	1083.56727	0.71805	0.00038975	-0.9413	-0.00051093	-0.22325	-0.00012118	542.7908435036034	26.788	0.76675	26.777	26.42	27.187	-0.01156					66	26	4	0	0	0	0.1175	1	4445	4445		38.615	0.43918	1	469130	+		1416	20617	813	813	1685	1685					0.028830558408344586
APQVHPVSSP	10	Unmodified	_APQVHPVSSP_					0	0	0		ENST00000563915.5_1_16:29831753-29841878:+|nuORF	ENST00000563915.5_1_16:29831753-29841878:+|nuORF	ENST00000563915.5_1_16:29831753-29841878:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.29766845703125	2	509.769448	1017.52434	0.50119	0.00025549	0.12394	6.3182E-05	0.62513	0.00031867	509.7694924164665	40.223	0.57734	40.316	40.09	40.667	0.09267					53	20	3	0	0	0	0.28569	1	8643	8643		26.268	2.4784	1	1262800			1417	11937	814	814	1686	1686					0.01628285783431238
APQVPPYSTF	10	Unmodified	_APQVPPYSTF_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.7797241210938	2	553.779482	1105.54441	0.12467	6.904E-05	-0.43832	-0.00024273	-0.31365	-0.00017369	553.7793252986851	60.147	1.318	60.147	59.533	60.851	0					90	47	2	0	0	0	0.027406	1	14743	14743		63.961	41.224	1	1171200			1418	5002	815	815	1687	1687					-0.004139632766509749
APQVPPYSTF	10	Unmodified	_APQVPPYSTF_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.779482	1105.54441	-0.080892	-4.4797E-05	-0.3557	-0.00019698	-0.43659	-0.00024178	553.779437784726	59.946	1.3437	60.041	59.55	60.894	0.095089	-0.016071	0.00020354	NaN	63.961	80	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1134300			1419	5002	815	815							-0.004139632766509749
APQVPPYSTF	10	Unmodified	_APQVPPYSTF_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	553.779482	1105.54441	0.25259	0.00013988	-0.69542	-0.00038511	-0.44283	-0.00024523	553.7792188297025	59.994	1.3699	59.983	59.49	60.86	-0.011486	-0.074134	-0.00017272	NaN	63.961	86	49	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	992380			1420	5002	815	815							-0.004139632766509749
APQWRALAESD	11	Unmodified	_APQWRALAESD_					0	0	0			REV__nc|ENSG00000041982|P24821-6|TNC	REV__nc|ENSG00000041982|P24821-6|TNC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3443603515625	2	622.306926	1242.5993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.487	1	93.486	92.986	93.986	-0.00051117								0	0	0	0.36685	1	24897	24897		4.5289	2.0304	1		+		1421	13528	816	816	1688	1688					-0.012295764760210659
APRAAGTVKEL	11	Unmodified	_APRAAGTVKEL_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.8251342773438	2	556.824755	1111.63496	0.16066	8.9459E-05	0.39646	0.00022076	0.55712	0.00031022	556.8248608328014	23.729	0.4306	23.729	23.542	23.973	0					26	14	3	0	0	0	0.43508	1	3569	3569		6.6304	0.89852	1	124180			1422	5318	817	817	1689	1689					0.08360505771634053
APRAAGTVKEL	11	Unmodified	_APRAAGTVKEL_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8248901367188	2	556.824755	1111.63496	0.24927	0.0001388	0.047382	2.6383E-05	0.29665	0.00016518	556.8247222639994	23.811	0.37812	23.738	23.588	23.966	-0.072559					23	12	2	0	0	0	0.42126	1	3569	3569		8.4443	0.28878	1	127140			1423	5318	817	817	1690	1690					0.08360505771634053
APRAAGTVKEL	11	Unmodified	_APRAAGTVKEL_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.8247680664062	2	556.824755	1111.63496	0.34334	0.00019118	-0.26044	-0.00014502	0.082903	4.6162E-05	556.8245063752363	23.849	0.39967	23.81	23.62	24.02	-0.038927					28	13	3	0	0	0	0.39785	1	3574	3574		11.518	3.3624	1	94956			1424	5318	817	817	1691	1691					0.08360505771634053
APRAALTRL	9	Unmodified	_APRAALTRL_					0	0	0		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.8034362792969	2	484.803626	967.592698	-0.10157	-4.9239E-05	-0.065096	-3.1559E-05	-0.16666	-8.0798E-05	484.80360130873237	27.867	0.62618	27.867	27.615	28.241	0					59	21	4	0	0	0	0.064268	2	4770	4770;4819		47.594	15.289	1	832920			1425	6274	818	818	1692;1693	1692					0.10760575153915397
APRAALTRL	9	Unmodified	_APRAALTRL_					0	0	0		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.8034973144531	2	484.803626	967.592698	-0.11208	-5.4337E-05	0.0056928	2.7599E-06	-0.10639	-5.1578E-05	484.80362013453123	27.858	0.64294	27.846	27.597	28.239	-0.01186					61	22	4	0	0	0	0.015027	2	4777	4777;4820		71.708	16.934	1	784060			1426	6274	818	818	1694;1695	1694					0.10760575153915397
APRAALTRL	9	Unmodified	_APRAALTRL_					0	0	0		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.8035583496094	2	484.803626	967.592698	-0.13954	-6.7651E-05	0.053275	2.5828E-05	-0.086268	-4.1823E-05	484.803636812569	27.865	0.67209	27.866	27.596	28.268	0.00046921					64	23	4	0	0	0	0.04299	2	4813	4762;4813		55.503	17.327	1	828860			1427	6274	818	818	1696;1697	1697					0.10760575153915397
APRAALVFAL	10	Unmodified	_APRAALVFAL_					0	0	0		ENSG00000170006|ENST00000304385|TMEM154	ENSG00000170006|ENST00000304385|TMEM154	ENSG00000170006|ENST00000304385|TMEM154	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8162841796875	2	514.816202	1027.61785	0.49786	0.00025631	-1.04	-0.00053543	-0.54219	-0.00027913	514.8155814225272	64.618	1.1427	64.618	64.288	65.431	0					102	41	4	0	0	0	0.18562	1	16031	16031		34.402	13.948	1	5510800			1428	6415	819	819	1698	1698					0.10514629956492172
APRAALVFAL	10	Unmodified	_APRAALVFAL_					0	0	0		ENSG00000170006|ENST00000304385|TMEM154	ENSG00000170006|ENST00000304385|TMEM154	ENSG00000170006|ENST00000304385|TMEM154	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.8160400390625	2	514.816202	1027.61785	0.40226	0.00020709	-0.88004	-0.00045306	-0.47778	-0.00024597	514.8156597371324	64.509	1.2665	64.602	64.284	65.551	0.09288					114	46	4	0	0	0	0.22916	1	15991	15991		29.082	12.139	1	5361100			1429	6415	819	819	1699	1699					0.10514629956492172
APRAALVFAL	10	Unmodified	_APRAALVFAL_					0	0	0		ENSG00000170006|ENST00000304385|TMEM154	ENSG00000170006|ENST00000304385|TMEM154	ENSG00000170006|ENST00000304385|TMEM154	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.81689453125	2	514.816202	1027.61785	0.33855	0.00017429	-0.79214	-0.0004078	-0.45359	-0.00023351	514.8156826503898	64.633	0.86	64.624	64.289	65.149	-0.0095367					87	31	4	0	0	0	0.18562	1	16021	16021		34.402	13.948	1	4835200			1430	6415	819	819	1700	1700					0.10514629956492172
APRADVPEV	9	Unmodified	_APRADVPEV_					0	0	0			REV__nc|ENSG00000142192|P05067-10|APP	REV__nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.77301025390625	2	477.256174	952.497795	-0.18253	-8.7114E-05	0.21596	0.00010307	0.033428	1.5953E-05	477.2562145614134	27.902	0.63441	27.902	27.643	28.277	0					48	21	3	0	0	0	0.29638	1	4737	4737		9.3831	1.7742	1	473570	+		1431	16108	820	820	1701	1701					0.019645968920826817
APRALKEIRKF	11	Unmodified	_APRALKEIRKF_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.9151306152344	3	443.610223	1327.80884	-0.124	-5.5009E-05	0.27563	0.00012227	0.15163	6.7263E-05	443.6102733187137	28.061	0.62602	28.061	27.763	28.389	0					50	21	3	0	0	0	0.33316	1	4897	4897		2.084	0.97421	1	350920			1432	951	821	821	1702	1702					0.15804711267765015
APRALKEIRKF	11	Unmodified	_APRALKEIRKF_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.9151611328125	3	443.610223	1327.80884	-0.13614	-6.0393E-05	0.28953	0.00012844	0.1534	6.8048E-05	443.61025637829556	28.014	0.5284	28.014	27.739	28.268	0.00046921					53	18	4	0	0	0	0.33085	1	4883	4883		8.2864	5.4431	1	338500			1433	951	821	821	1703	1703					0.15804711267765015
APRALKEIRKF	11	Unmodified	_APRALKEIRKF_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	443.610223	1327.80884	-0.16255	-7.2107E-05	0.24095	0.00010689	0.078409	3.4783E-05	443.61030283115304	28.025	0.54264	28.021	27.763	28.306	-0.0042572	-0.01142	-3.4191E-05	NaN	8.2864	47	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326830			1434	951	821	821							0.15804711267765015
APRALLLLL	9	Unmodified	_APRALLLLL_					0	0	0		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.3372497558594	2	490.33677	978.658987	0.48833	0.00023945	-0.19757	-9.6876E-05	0.29076	0.00014257	490.3371583607938	75.053	2.5259	75.053	74.679	77.204	0					264	91	5	0	0	0	0.044952	1	19232	19232		54.774	6.4277	1	40627000			1435	8234	822	822	1704	1704					0.16880390996004735
APRALLLLL	9	Unmodified	_APRALLLLL_					0	0	0		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.3374328613281	2	490.33677	978.658987	0.36106	0.00017704	-0.085912	-4.2126E-05	0.27515	0.00013492	490.337302990868	74.977	4.6922	75.03	74.671	79.363	0.052368					322	176	5	0	0	0	0.027237	1	19210	19210		61.357	6.5839	1	48233000			1436	8234	822	822	1705	1705					0.16880390996004735
APRALLLLL	9	Unmodified	_APRALLLLL_					0	0	0		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.3372802734375	2	490.33677	978.658987	0.60521	0.00029676	-0.23835	-0.00011687	0.36686	0.00017988	490.33709103568157	75.086	1.6462	75.055	74.7	76.346	-0.031487					198	60	5	0	0	0	0.044952	2	19241	19241;19289		54.774	6.4277	1	35649000			1437	8234	822	822	1706;1707	1706					0.16880390996004735
APRALPGSAVL	11	Unmodified	_APRALPGSAVL_					0	0	0		ENSG00000181826|ENST00000454158|RELL1	ENSG00000181826|ENST00000454158|RELL1	ENSG00000181826|ENST00000454158|RELL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3165893554688	2	526.316566	1050.61858	0.8354	0.00043969	-0.19646	-0.0001034	0.63894	0.00033629	526.3162331297177	45.688	0.79072	45.688	45.238	46.029	0					52	28	3	0	0	0	0.29518	1	10229	10229		22.658	2.2045	1	483580			1438	7252	823	823	1708	1708					0.09529424605557324
APRAPRALAAA	11	Unmodified	_APRAPRALAAA_					0	0	0		ENST00000470922.5_1_22:19165453-19166237:-|nuORF;ENSG00000100075|ENST00000215882|SLC25A1	ENST00000470922.5_1_22:19165453-19166237:-|nuORF	ENST00000470922.5_1_22:19165453-19166237:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.8198852539062	2	532.819807	1063.62506	0.37625	0.00020047	-0.22212	-0.00011835	0.15413	8.2125E-05	532.8196012790571	25.437	0.73491	25.437	25.064	25.798	0					77	24	4	0	0	0	0.0039239	3	4052	4001;4052;4094		82.529	48.128	1	1082100			1439	1527	824	824	1709;1710;1711	1710					0.09579362556928572
APRAPRALAAA	11	Unmodified	_APRAPRALAAA_					0	0	0		ENST00000470922.5_1_22:19165453-19166237:-|nuORF;ENSG00000100075|ENST00000215882|SLC25A1	ENST00000470922.5_1_22:19165453-19166237:-|nuORF	ENST00000470922.5_1_22:19165453-19166237:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.81982421875	2	532.819807	1063.62506	0.079101	4.2147E-05	0.10331	5.5048E-05	0.18242	9.7195E-05	532.8198055937419	25.489	0.7723	25.433	25.023	25.796	-0.055931					77	26	4	0	0	0	0.0013026	2	4093	4005;4093		92.653	58.252	1	1114600			1440	1527	824	824	1712;1713	1713					0.09579362556928572
APRAPRALAAA	11	Unmodified	_APRAPRALAAA_					0	0	0		ENST00000470922.5_1_22:19165453-19166237:-|nuORF;ENSG00000100075|ENST00000215882|SLC25A1	ENST00000470922.5_1_22:19165453-19166237:-|nuORF	ENST00000470922.5_1_22:19165453-19166237:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8198852539062	2	532.819807	1063.62506	0.14457	7.7032E-05	0.037647	2.0059E-05	0.18222	9.7091E-05	532.8197827441259	25.51	0.8108	25.479	25.047	25.858	-0.031408					79	28	4	0	0	0	0.0039239	3	4064	4019;4064;4106		82.529	32.445	1	1108800			1441	1527	824	824	1714;1715;1716	1715					0.09579362556928572
APRASERGVRL	11	Unmodified	_APRASERGVRL_					0	0	0		ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.570556640625	3	404.570427	1210.68945	-0.019256	-7.7902E-06	-0.16283	-6.5878E-05	-0.18209	-7.3668E-05	404.5703960268634	20.568	0.84525	20.568	20.235	21.08	0					71	29	5	0	0	0	0.43149	1	2554	2554		5.8681	0.57125	1	307670			1442	2215	825	825	1717	1717					0.09253517643082887
APRASERGVRL	11	Unmodified	_APRASERGVRL_					0	0	0		ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.9051818847656	3	404.570427	1210.68945	0.15633	6.3247E-05	-0.24466	-9.8981E-05	-0.088326	-3.5734E-05	404.5703522482406	20.621	0.73021	20.568	20.302	21.033	-0.05291					45	25	2	0	0	0	0.41288	1	2565	2565		7.846	2.4433	1	354530			1443	2215	825	825	1718	1718					0.09253517643082887
APRATAQML	9	Oxidation (M)	_APRATAQM(Oxidation (M))L_		APRATAQM(1)L		APRATAQM(65)L	0	0	1		ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.758056640625	2	487.758027	973.5015	0.065528	3.1962E-05	-0.43017	-0.00020982	-0.36464	-0.00017786	487.75798159187167	22.726	0.45783	22.726	22.446	22.904	0					38	15	3	0	0	0	0.01909	1	3240	3240		65.474	25.516	1	569410			1444	3443	826	826	1719	1719		436			0.01368943394300004
APRATAQML	9	Oxidation (M)	_APRATAQM(Oxidation (M))L_		APRATAQM(1)L		APRATAQM(62)L	0	0	1		ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7580871582031	2	487.758027	973.5015	0.058682	2.8622E-05	-0.35618	-0.00017373	-0.29749	-0.0001451	487.7580206318817	22.855	0.44805	22.767	22.461	22.909	-0.087608					36	15	3	0	0	0	0.026579	1	3279	3279		61.602	21.645	1	690000			1445	3443	826	826	1720	1720		436			0.01368943394300004
APRATAQML	9	Oxidation (M)	_APRATAQM(Oxidation (M))L_		APRATAQM(1)L		APRATAQM(50)L	0	0	1		ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.75811767578125	2	487.758027	973.5015	0.093759	4.5732E-05	-0.81984	-0.00039989	-0.72608	-0.00035415	487.7578827568469	23.148	0.63935	23.061	22.909	23.548	-0.087608					49	22	3	0	0	0	0.1303	1	3348	3348		49.527	18.891	1	652590			1446	3443	826	826	1721	1721		436			0.01368943394300004
APRATAQML	9	Oxidation (M)	_APRATAQM(Oxidation (M))L_		APRATAQM(1)L		APRATAQM(65)L	0	0	1		ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.758056640625	2	487.758027	973.5015	0.17692	8.6294E-05	-0.43505	-0.0002122	-0.25813	-0.00012591	487.7579511030088	22.868	0.44844	22.824	22.529	22.977	-0.044867					38	15	3	0	0	0	0.01909	1	3269	3269		65.474	32.688	1	679140			1447	3443	826	826	1722	1722		436			0.01368943394300004
APRATAQML	9	Oxidation (M)	_APRATAQM(Oxidation (M))L_		APRATAQM(1)L		APRATAQM(57)L	0	0	1		ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7579040527344	2	487.758027	973.5015	0.25492	0.00012434	-1.1144	-0.00054358	-0.85952	-0.00041924	487.7578042296359	23.174	0.63485	23.129	22.951	23.586	-0.044867					59	22	4	0	0	0	0.097101	1	3352	3352		57.249	26.613	1	625070			1448	3443	826	826	1723	1723		436			0.01368943394300004
APRAVFPSI	9	Unmodified	_APRAVFPSI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENST00000477812.1_1_7:5569027-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.27923583984375	2	479.279452	956.544351	0.15697	7.5233E-05	-1.1038	-0.00052905	-0.94687	-0.00045381	479.2789288060801	51.895	1.8157	51.895	51.172	52.987	0					168	66	4	0	0	0	0.0079761	3	12156	12107;12156;12204		82.529	26.352	1	13691000			1449	1050;2147;10962	827	827	1724;1725;1726	1725					0.0643408151404401
APRAVFPSI	9	Unmodified	_APRAVFPSI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENST00000477812.1_1_7:5569027-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2791442871094	2	479.279452	956.544351	0.26991	0.00012936	-1.1555	-0.00055381	-0.88558	-0.00042444	479.2788327700162	51.827	1.7356	51.876	51.223	52.959	0.049141					185	63	5	0	0	0	0.0046246	4	12143	12101;12143;12184;12228		89.401	24.166	1	15079000			1450	1050;2147;10962	827	827	1727;1728;1729;1730	1728					0.0643408151404401
APRAVFPSI	9	Unmodified	_APRAVFPSI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2;ENST00000477812.1_1_7:5569027-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.27935791015625	2	479.279452	956.544351	0.090511	4.338E-05	-0.28466	-0.00013643	-0.19415	-9.3053E-05	479.2792311990266	51.964	1.8845	51.964	51.21	53.094	-0.00080872					202	69	6	0	0	0	0.0079761	5	12149	12111;12149;12200;12248;12292		82.529	26.352	1	12778000			1451	1050;2147;10962	827	827	1731;1732;1733;1734;1735	1732					0.0643408151404401
APRDGRVVF	9	Unmodified	_APRDGRVVF_					0	0	0		ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.80255126953125	2	508.785433	1015.55631	-0.065471	-3.3311E-05	0.93792	0.0004772	0.87245	0.00044389	508.78602295878045	28.099	0.3257	28.099	28.008	28.333	0					13	10	2	0	0	0	0.11201	1	4876	4876		36.506	7.4246	1	120080			1452	8344	828	828	1736	1736					0.04915698257229906
APRDGRVVF	9	Unmodified	_APRDGRVVF_					0	0	0		ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8027648925781	2	508.785433	1015.55631	0.0093631	4.7638E-06	1.156	0.00058813	1.1653	0.0005929	508.78554547035	28.168	0.30967	28.164	28.024	28.333	-0.0042572					14	10	2	0	0	0	0.13748	1	4876	4876		32.786	5.1569	1	111460			1453	8344	828	828	1737	1737					0.04915698257229906
APRDIATGL	9	Unmodified	_APRDIATGL_					0	0	0		HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH	HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2584533691406	2	457.258717	912.50288	0.30047	0.00013739	-0.3587	-0.00016402	-0.058229	-2.6626E-05	457.2584652172131	36.246	0.61183	36.328	36.117	36.729	0.082355					32	21	2	0	0	0	0.05341	1	7345	7345		51.63	11.672	1	382710			1454	1359	829	829	1738	1738					0.04312900754700877
APRDIATGL	9	Unmodified	_APRDIATGL_					0	0	0		HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH	HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.25872802734375	2	457.258717	912.50288	0.50229	0.00022968	-0.59771	-0.00027331	-0.095416	-4.363E-05	457.258435326086	36.19	0.56772	36.276	36.059	36.626	0.08625					35	19	2	0	0	0	0.10059	1	7353	7353		38.176	5.8701	1	275840			1455	1359	829	829	1739	1739					0.04312900754700877
APRDIATGL	9	Unmodified	_APRDIATGL_					0	0	0		HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH	HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	457.258717	912.50288	0.19829	9.067E-05	-0.39217	-0.00017932	-0.19388	-8.8652E-05	457.2585642952044	36.354	0.55732	36.354	36.142	36.7	0	0.034821	3.1655E-05	NaN	51.63	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247930			1456	1359	829	829							0.04312900754700877
APRDMMDAF	9	2 Oxidation (M)	_APRDM(Oxidation (M))M(Oxidation (M))DAF_		APRDM(1)M(1)DAF		APRDM(46)M(46)DAF	0	0	2		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2232055664062	2	543.223159	1084.43177	0.27425	0.00014898	-0.22626	-0.00012291	0.047988	2.6068E-05	543.2231470019956	25.719	0.73834	25.681	25.298	26.037	-0.038671					48	25	3	0	0	0	0.069258	1	4135	4135		45.74	26.483	1	384280			1457	4110	830	830	1740	1740		520;521			-0.10707303336630503
APRDMMDAF	9	2 Oxidation (M)	_APRDM(Oxidation (M))M(Oxidation (M))DAF_		APRDM(1)M(1)DAF		APRDM(48)M(48)DAF	0	0	2		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2230834960938	2	543.223159	1084.43177	0.35478	0.00019273	-0.29347	-0.00015942	0.061312	3.3306E-05	543.2230910157128	25.74	0.80223	25.717	25.356	26.158	-0.022236					60	28	3	0	0	0	0.064268	1	4145	4145		47.594	31.747	1	328630			1458	4110	830	830	1741	1741		520;521			-0.10707303336630503
APRDQTSLKR	10	Unmodified	_APRDQTSLKR_					0	0	0			REV__nc|ENSG00000106078|O75128-6|COBL	REV__nc|ENSG00000106078|O75128-6|COBL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135375976562	2	586.330736	1170.64692	-0.063585	-3.7282E-05	2.8898	0.0016944	2.8262	0.0016571	586.332272458902	111.82	0.18015	111.82	111.76	111.94	0					27	21	2	0	0	0	0.31889	1	29081	29081		6.2058	2.6093	1	87127	+		1459	14508	831	831	1742	1742					0.06842122514854054
APRDRRAVSF	10	Unmodified	_APRDRRAVSF_					0	0	0		ENSG00000006555|ENST00000371276|TTC22	ENSG00000006555|ENST00000371276|TTC22	ENSG00000006555|ENST00000371276|TTC22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.82568359375	2	587.825621	1173.63669	0.58054	0.00034126	-0.53729	-0.00031583	0.043253	2.5425E-05	587.8254481375521	20.045	0.35771	19.99	19.762	20.119	-0.055693					23	12	3	0	0	0	0.40532	1	2405	2405		2.4985	1.0166	1	72639			1460	361	832	832	1743	1743					0.05681559580239082
APRDSLRSL	9	Unmodified	_APRDSLRSL_					0	0	0		ENSG00000105339|ENST00000519811|DENND3;DENND3|p.F233Sfs*35|1|0.08|ENSG00000105339|chr8:141151699-141151700|-/AGTGG|frameshift_variant	ENSG00000105339|ENST00000519811|DENND3	ENSG00000105339|ENST00000519811|DENND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.78814697265625	2	507.788173	1013.56179	0.1953	9.9169E-05	-0.17244	-8.7565E-05	0.022852	1.1604E-05	507.7881159557382	27.2	0.54263	27.188	26.984	27.527	-0.011562					29	18	3	0	0	0	0.26807	1	4591	4591		13.615	2.8154	1	81424			1461	1967	833	833	1744	1744					0.055553770490291754
APRDTTVLV	9	Unmodified	_APRDTTVLV_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1;nc|ENSG00000162692|P19320-3|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2780456542969	2	486.279649	970.544745	-1.3474	-0.00065523	-0.90121	-0.00043824	-2.2486	-0.0010935	486.2791253950499	34.763	0.68421	34.838	34.604	35.288	0.075306					62	24	4	0	0	0	0.07944	1	6881	6881		41.956	12.115	1	1109300			1462	5601	834	834	1745	1745					0.0582945644322308
APRDTTVLV	9	Unmodified	_APRDTTVLV_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1;nc|ENSG00000162692|P19320-3|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	486.279649	970.544745	-0.57178	-0.00027805	-1.6159	-0.00078579	-2.1877	-0.0010638	486.27891168829956	34.751	0.66316	34.829	34.561	35.224	0.077381	-0.014716	-0.00034452	NaN	41.956	63	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1204000			1463	5601	834	834							0.0582945644322308
APREALAQTVL	11	Unmodified	_APREALAQTVL_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000473373.1_1_20:34214165-34214426:-|nuORF;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.8380737304688	2	584.837862	1167.66117	0.66065	0.00038637	-0.0079813	-4.6678E-06	0.65267	0.0003817	584.838046481989	45.788	0.84929	45.788	45.501	46.35	0					86	30	4	0	0	0	0.055109	2	10241	10241;10292		51.765	18.32	1	2088300			1464	8377	835	835	1746;1747	1746					0.08404774943119264
APREALAQTVL	11	Unmodified	_APREALAQTVL_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000473373.1_1_20:34214165-34214426:-|nuORF;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.339599609375	2	584.837862	1167.66117	0.30768	0.00017994	0.34592	0.00020231	0.6536	0.00038225	584.838371127336	45.694	0.89422	45.754	45.389	46.283	0.059837					82	31	4	0	0	0	0.055109	2	10196	10196;10242		51.765	21.924	1	2510600			1465	8377	835	835	1748;1749	1748					0.08404774943119264
APREALAQTVL	11	Unmodified	_APREALAQTVL_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000473373.1_1_20:34214165-34214426:-|nuORF;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8383178710938	2	584.837862	1167.66117	0.51711	0.00030243	0.1566	9.1588E-05	0.67372	0.00039402	584.8382402455954	45.634	0.86949	45.699	45.358	46.227	0.065048					91	31	4	0	0	0	0.078698	2	10182	10182;10229		44.945	17.721	1	2320900			1466	8377	835	835	1750;1751	1750					0.08404774943119264
APREGISQEAL	11	Unmodified	_APREGISQEAL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8088989257812	2	585.809302	1169.60405	-1.1076	-0.00064887	-0.06056	-3.5476E-05	-1.1682	-0.00068435	585.8091661419211	34.756	0.56195	34.756	34.5	35.062	0					46	19	3	0	0	0	0.011476	1	6880	6880		66.55	33.105	1	672010			1467	4024	836	836	1752	1752					0.026033076667545174
APREGISQEAL	11	Unmodified	_APREGISQEAL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.80810546875	2	585.809302	1169.60405	-1.3735	-0.00080463	-0.055218	-3.2347E-05	-1.4288	-0.00083698	585.8091505998475	34.655	0.54836	34.731	34.522	35.071	0.075306					48	19	3	0	0	0	0.0078098	2	6865	6865;6921		74.306	33.582	1	652340			1468	4024	836	836	1753;1754	1753					0.026033076667545174
APREGISQEAL	11	Unmodified	_APREGISQEAL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8082275390625	2	585.809302	1169.60405	-0.41872	-0.00024529	-1.0402	-0.00060937	-1.4589	-0.00085466	585.8085971052743	34.655	0.64381	34.733	34.444	35.088	0.077377					58	22	4	0	0	0	0.0096933	2	6846	6846;6898		70.321	39.617	1	682560			1469	4024	836	836	1755;1756	1755					0.026033076667545174
APRELGLGL	9	Unmodified	_APRELGLGL_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.2777404785156	2	463.276909	924.539266	0.1145	5.3047E-05	0.72842	0.00033746	0.84292	0.00039051	463.27735652675216	49.062	0.6351	49.062	48.827	49.462	0					47	22	3	0	0	0	0.10059	2	11262	11262;11315		38.176	9.094	1	894160			1470	3265	837	837	1757;1758	1757					0.07397777651419801
APRELGLGL	9	Unmodified	_APRELGLGL_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2763671875	2	463.276909	924.539266	0.02066	9.5714E-06	0.9193	0.00042589	0.93996	0.00043546	463.27748516395	49.058	0.63721	49.103	48.878	49.515	0.044891					49	22	3	0	0	0	0.05341	3	11274	11264;11274;11323		51.63	11.68	1	1020800			1471	3265	837	837	1759;1760;1761	1760					0.07397777651419801
APRELGLGL	9	Unmodified	_APRELGLGL_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.2778015136719	2	463.276909	924.539266	0.027555	1.2766E-05	0.96964	0.00044921	0.9972	0.00046198	463.27749203423417	48.987	0.5831	49.019	48.828	49.411	0.032043					45	20	3	0	0	0	0.074552	2	11232	11232;11280		43.772	10.987	1	1062900			1472	3265	837	837	1762;1763	1762					0.07397777651419801
APRELGLGL	9	Unmodified	_APRELGLGL_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	463.276909	924.539266	0.1145	5.3047E-05	0.72842	0.00033746	0.84292	0.00039051	463.27735652675216	49.062	0.6351	49.062	48.827	49.462	0	0.00090379	-0.00011485	NaN	51.63	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	894160			1473	3265	837	837							0.07397777651419801
APRELGLGL	9	Unmodified	_APRELGLGL_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	463.276909	924.539266	0.027555	1.2766E-05	0.96964	0.00044921	0.9972	0.00046198	463.27749203423417	48.987	0.5831	49.019	48.828	49.411	0.032043	-0.04233	0.00010866	NaN	51.63	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1062900			1474	3265	837	837							0.07397777651419801
APRERGSSL	9	Unmodified	_APRERGSSL_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7646484375	2	486.764697	971.514842	-0.062226	-3.0289E-05	-0.14075	-6.8511E-05	-0.20297	-9.8801E-05	486.76476625052055	13.86	0.79807	13.86	13.567	14.365	0					56	27	3	0	0	0	0.086462	1	552	552		40.239	17.503	1	454830			1475	3139	838	838	1764	1764					0.0279451749790951
APRERGSSL	9	Unmodified	_APRERGSSL_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7646484375	2	486.764697	971.514842	-0.10169	-4.9501E-05	-0.12325	-5.9993E-05	-0.22494	-0.00010949	486.7648208155852	13.974	0.62077	13.869	13.538	14.159	-0.10466					49	21	3	0	0	0	0.11201	1	587	587		36.506	1.5741	1	424760			1476	3139	838	838	1765	1765					0.0279451749790951
APRERGSSL	9	Unmodified	_APRERGSSL_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7646789550781	2	486.764697	971.514842	-0.057415	-2.7948E-05	-0.024373	-1.1864E-05	-0.081788	-3.9812E-05	486.76474959589996	13.951	0.60614	13.885	13.575	14.181	-0.066068					50	20	3	0	0	0	0.064268	1	584	584		47.594	16.326	1	490510			1477	3139	838	838	1766	1766					0.0279451749790951
APRGDKEEL	9	Unmodified	_APRGDKEEL_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7643127441406	2	507.764363	1013.51417	0.030295	1.5383E-05	-0.47004	-0.00023867	-0.43974	-0.00022328	507.7643245376357	15.086	0.91745	15.086	14.873	15.791	0					85	31	5	0	0	0	0.015924	2	915	915;953		70.332	23.241	1	4441200			1478	400	839	839	1767;1768	1767					0.007956780581821477
APRGDKEEL	9	Unmodified	_APRGDKEEL_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7645263671875	2	507.764363	1013.51417	0.072652	3.689E-05	-0.43061	-0.00021865	-0.35795	-0.00018176	507.76430856980244	15.21	1.1398	15.1	14.676	15.816	-0.10981					79	39	3	0	0	0	0.001957	2	988	947;988		110.55	60.62	1	4212300			1479	400	839	839	1769;1770	1770					0.007956780581821477
APRGDKEEL	9	Unmodified	_APRGDKEEL_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.76422119140625	2	507.764363	1013.51417	0.00067142	3.4092E-07	-0.36403	-0.00018484	-0.36336	-0.0001845	507.76429450111897	15.235	0.90995	15.171	14.926	15.836	-0.064413					57	30	2	0	0	0	0.017549	2	1001	959;1001		67.838	23.98	1	4579300			1480	400	839	839	1771;1772	1772					0.007956780581821477
APRGGRKT	8	Unmodified	_APRGGRKT_					0	0	0		ENSG00000170561|ENST00000302057|IRX2	ENSG00000170561|ENST00000302057|IRX2	ENSG00000170561|ENST00000302057|IRX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.2432556152344	2	421.751393	841.488233	-0.17874	-7.5384E-05	1.1698	0.00049336	0.99105	0.00041798	421.75132663617046	15.638	0.40663	15.574	15.457	15.864	-0.064414					16	13	2	0	0	0	0.34218	1	1126	1126		9.3474	4.1168	1	11706			1481	6464	840	840	1773	1773					0.06114873397223164
APRGKSGAAL	10	Unmodified	_APRGKSGAAL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.2720031738281	2	464.272158	926.529764	-0.34062	-0.00015814	-0.15467	-7.181E-05	-0.49529	-0.00022995	464.2724770612361	13.646	0.79674	13.646	13.227	14.024	0					90	27	6	0	0	0	0.011792	1	481	481		80.676	46.274	1	3048700			1482	4547	841	841	1774	1774					0.06356009365879345
APRGKSGAAL	10	Unmodified	_APRGKSGAAL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.2720642089844	2	464.272158	926.529764	-0.36007	-0.00016717	-0.089099	-4.1366E-05	-0.44917	-0.00020854	464.2724105992591	13.726	0.81103	13.621	13.212	14.023	-0.10466					90	28	5	0	0	0	0.022191	1	504	504		69.338	31.163	1	2744600			1483	4547	841	841	1775	1775					0.06356009365879345
APRGKSGAAL	10	Unmodified	_APRGKSGAAL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.2720642089844	2	464.272158	926.529764	-0.1765	-8.1944E-05	-0.14097	-6.5451E-05	-0.31747	-0.00014739	464.27240401517986	13.738	0.78982	13.672	13.247	14.037	-0.066068					84	27	5	0	0	0	0.0050981	1	508	508		91.085	53.111	1	3202000			1484	4547	841	841	1776	1776					0.06356009365879345
APRGLEPIAI	10	Unmodified	_APRGLEPIAI_					0	0	0		ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.811767578125	2	518.811116	1035.60768	0.34917	0.00018115	1.2266	0.00063637	1.5758	0.00081752	518.811724954531	53	1.115	52.991	52.679	53.794	-0.0096054					79	41	2	0	0	0	0.11062	1	12476	12476		45.74	1.9675	1	15719000			1485	1845	842	842	1777	1777					0.09130022231261137
APRGPGAEL	9	Unmodified	_APRGPGAEL_					0	0	0		ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.2376708984375	2	434.237784	866.461016	-0.19353	-8.4039E-05	0.0027349	1.1876E-06	-0.1908	-8.2852E-05	434.23769252017956	26.595	1.4599	26.595	26.042	27.502	0					135	50	4	0	0	0	0.0010463	2	4421	4377;4421		122.18	26.787	1	1506200			1486	8344	843	843	1778;1779	1779					0.022443450661853603
APRGPGAEL	9	Unmodified	_APRGPGAEL_					0	0	0		ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.2376708984375	2	434.237784	866.461016	-0.092571	-4.0198E-05	-0.039025	-1.6946E-05	-0.1316	-5.7144E-05	434.2376570779847	26.605	1.5843	26.567	25.985	27.57	-0.038671					149	55	5	0	0	0	0.0019475	2	4423	4379;4423		110.67	17.561	1	1692500			1487	8344	843	843	1780;1781	1781					0.022443450661853603
APRGPGAEL	9	Unmodified	_APRGPGAEL_					0	0	0		ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.23760986328125	2	434.237784	866.461016	0.053809	2.3366E-05	-0.18702	-8.1209E-05	-0.13321	-5.7843E-05	434.2375718600945	26.643	1.5304	26.621	26.043	27.573	-0.022238					154	53	5	0	0	0	0.012386	1	4392	4392		75.761	2.7929	1	1612500			1488	8344	843	843	1782	1782					0.022443450661853603
APRGQRPESAL	11	Unmodified	_APRGQRPESAL_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.3231201171875	2	591.322911	1180.63127	0.19888	0.0001176	0.43598	0.0002578	0.63486	0.00037541	591.3230251173013	19.223	0.70339	19.223	18.952	19.655	0					78	24	4	0	0	0	0.011984	2	2187	2139;2187		65.474	43.937	1	593620			1489	8210	844	844	1783;1784	1784					0.04817835997801012
APRGQRPESAL	11	Unmodified	_APRGQRPESAL_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.3231811523438	2	591.322911	1180.63127	0.30346	0.00017944	0.17584	0.00010398	0.4793	0.00028342	591.322926919955	19.387	0.8637	19.271	19.005	19.869	-0.11592					82	29	4	0	0	0	0.022858	3	2238	2191;2238;2286		61.09	46.252	1	609190			1490	8210	844	844	1785;1786;1787	1786					0.04817835997801012
APRGQRPESAL	11	Unmodified	_APRGQRPESAL_					0	0	0		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.3230590820312	2	591.322911	1180.63127	0.30537	0.00018057	0.063159	3.7347E-05	0.36853	0.00021792	591.3229121718651	19.313	0.91484	19.258	18.989	19.904	-0.055693					89	31	4	0	0	0	0.0011409	3	2215	2172;2215;2260		94.909	71.119	1	566350			1491	8210	844	844	1788;1789;1790	1789					0.04817835997801012
APRGTPQL	8	Unmodified	_APRGTPQL_					0	0	0		ENST00000216264.12_1_22:47081869-47082037:-|nuORF	ENST00000216264.12_1_22:47081869-47082037:-|nuORF	ENST00000216264.12_1_22:47081869-47082037:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.8919982910156	2	420.240327	838.466101	-0.27515	-0.00011563	-0.16856	-7.0835E-05	-0.44371	-0.00018647	420.23999463955806	22.895	0.66082	22.895	22.563	23.224	0					34	22	2	0	0	0	0.34092	1	3307	3307		8.5933	0	1	31557			1492	8816	845	845	1791	1791					0.040406489287988734
APRGTRLSP	9	Unmodified	_APRGTRLSP_					0	0	0		ENST00000540691.5_2_19:18679489-18679762:+|nuORF	ENST00000540691.5_2_19:18679489-18679762:+|nuORF	ENST00000540691.5_2_19:18679489-18679762:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.77789306640625	2	477.777608	953.540663	0.4231	0.00020215	0.08122	3.8805E-05	0.50432	0.00024095	477.7776057274182	20.368	2.0644	20.258	19.29	21.355	-0.11003					187	72	4	0	0	0	0.003317	4	2552	2423;2468;2509;2552		99.755	26.787	1	5172900			1493	11725	846	846	1792;1793;1794;1795	1795					0.0620341174017085
APRGTRLSP	9	Unmodified	_APRGTRLSP_					0	0	0		ENST00000540691.5_2_19:18679489-18679762:+|nuORF	ENST00000540691.5_2_19:18679489-18679762:+|nuORF	ENST00000540691.5_2_19:18679489-18679762:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.77783203125	2	477.777608	953.540663	0.53524	0.00025573	-0.048177	-2.3018E-05	0.48706	0.00023271	477.77753967250055	20.233	2.3147	20.18	19.256	21.571	-0.052912					199	82	4	0	0	0	0.0059482	6	2452	2316;2361;2403;2452;2500;2542		85.642	25.568	1	5123600			1494	11725	846	846	1796;1797;1798;1799;1800;1801	1799					0.0620341174017085
APRHGSLGF	9	Unmodified	_APRHGSLGF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000484615.5_1_22:39713464-39715605:-|nuORF;ENST00000460589.5_1_22:39713464-39715412:-|nuORF;ENST00000465618.5_1_22:39712851-39715803:-|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2513122558594	2	471.251226	940.487899	0.01745	8.2232E-06	-0.40326	-0.00019004	-0.38581	-0.00018181	471.2507634115306	25.076	0.89245	25.076	24.79	25.683	0					68	30	4	0	0	0	0.067563	1	3963	3963		66.457	30.412	1	628880			1495	1567	847	847	1802	1802					0.015274536773858927
APRHGSLGF	9	Unmodified	_APRHGSLGF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000484615.5_1_22:39713464-39715605:-|nuORF;ENST00000460589.5_1_22:39713464-39715412:-|nuORF;ENST00000465618.5_1_22:39712851-39715803:-|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.25140380859375	2	471.251226	940.487899	-0.032582	-1.5354E-05	-0.053863	-2.5383E-05	-0.086446	-4.0738E-05	471.25100949509914	25.184	0.75457	25.128	24.837	25.592	-0.055931					67	26	4	0	0	0	0.026033	1	3994	3994		82.529	46.485	1	676990			1496	1567	847	847	1803	1803					0.015274536773858927
APRHGSLGF	9	Unmodified	_APRHGSLGF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000484615.5_1_22:39713464-39715605:-|nuORF;ENST00000460589.5_1_22:39713464-39715412:-|nuORF;ENST00000465618.5_1_22:39712851-39715803:-|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.25115966796875	2	471.251226	940.487899	-0.18876	-8.8954E-05	-0.33389	-0.00015735	-0.52265	-0.0002463	471.2509186331072	25.141	0.84897	25.11	24.833	25.682	-0.031408					77	29	4	0	0	0	0.075356	1	3979	3979		63.961	27.916	1	613120			1497	1567	847	847	1804	1804					0.015274536773858927
APRHPSTNSL	10	Unmodified	_APRHPSTNSL_					0	0	0		ENST00000489477.1_1_6:97344023-97345677:-|nuORF;ENSG00000123545|ENST00000316149|NDUFAF4	ENST00000489477.1_1_6:97344023-97345677:-|nuORF	ENST00000489477.1_1_6:97344023-97345677:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2835083007812	2	540.283254	1078.55196	0.35756	0.00019318	-0.24471	-0.00013221	0.11285	6.0971E-05	540.2831834290405	18.304	0.52066	18.304	17.898	18.419	0					29	17	2	0	0	0	0.35637	1	1875	1875		11.495	3.3392	1	59180			1498	3112	848	848	1805	1805					0.01582189043665494
APRHPSTNSL	10	Unmodified	_APRHPSTNSL_					0	0	0		ENST00000489477.1_1_6:97344023-97345677:-|nuORF;ENSG00000123545|ENST00000316149|NDUFAF4	ENST00000489477.1_1_6:97344023-97345677:-|nuORF	ENST00000489477.1_1_6:97344023-97345677:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.283203125	2	540.283254	1078.55196	0.27969	0.00015111	-0.44553	-0.00024071	-0.16583	-8.9598E-05	540.2829070905502	18.399	0.54386	18.282	17.957	18.501	-0.11739					31	18	2	0	0	0	0.39009	2	1949	1896;1949		5.2969	1.9514	1	84253			1499	3112	848	848	1806;1807	1807					0.01582189043665494
APRHPSTNSL	10	Unmodified	_APRHPSTNSL_					0	0	0		ENST00000489477.1_1_6:97344023-97345677:-|nuORF;ENSG00000123545|ENST00000316149|NDUFAF4	ENST00000489477.1_1_6:97344023-97345677:-|nuORF	ENST00000489477.1_1_6:97344023-97345677:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2825927734375	2	540.283254	1078.55196	0.2235	0.00012075	0.0020951	1.132E-06	0.22559	0.00012189	540.2832845210958	18.391	0.67288	18.333	17.927	18.6	-0.058172					35	23	2	0	0	0	0.35637	1	1931	1931		11.495	2.7493	1	69007			1500	3112	848	848	1808	1808					0.01582189043665494
APRHPVSQA	9	Unmodified	_APRHPVSQA_					0	0	0		ENST00000588880.5_1_17:75137105-75137180:+|nuORF	ENST00000588880.5_1_17:75137105-75137180:+|nuORF	ENST00000588880.5_1_17:75137105-75137180:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.76202392578125	2	481.761958	961.509363	-0.14049	-6.768E-05	-1.6663	-0.00080275	-1.8068	-0.00087043	481.76192987134715	12.945	0.70055	12.945	12.582	13.282	0					71	24	6	0	0	0	0.038291	1	267	267		57.249	30.365	1	379250			1501	12152	849	849	1809	1809					0.027068387060808163
APRHPVSQA	9	Unmodified	_APRHPVSQA_					0	0	0		ENST00000588880.5_1_17:75137105-75137180:+|nuORF	ENST00000588880.5_1_17:75137105-75137180:+|nuORF	ENST00000588880.5_1_17:75137105-75137180:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7618408203125	2	481.761958	961.509363	-0.085245	-4.1068E-05	-1.7702	-0.00085279	-1.8554	-0.00089386	481.76199651208685	13.019	0.57567	12.919	12.673	13.249	-0.099291					65	19	6	0	0	0	0.089483	1	300	300		59.368	27.063	1	347680			1502	12152	849	849	1810	1810					0.027068387060808163
APRHVDRSDFF	11	Unmodified	_APRHVDRSDFF_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.5581359863281	3	449.558187	1345.65273	0.27842	0.00012517	-0.33683	-0.00015142	-0.058411	-2.6259E-05	449.55796337848744	31.922	0.80555	31.922	31.694	32.5	0					58	28	3	0	0	0	0.14892	2	6039	5994;6039		35.793	28.756	1	1032200			1503	1369	850	850	1811;1812	1812					-0.00626778973492037
APRHVDRSDFF	11	Unmodified	_APRHVDRSDFF_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.8928527832031	3	449.558187	1345.65273	0.3235	0.00014543	-0.045723	-2.0555E-05	0.27778	0.00012488	449.8925561388541	31.888	0.75632	31.93	31.709	32.465	0.042364					60	26	3	0	0	0	0.2971	1	6054	6054		22.486	14.042	1	991440			1504	1369	850	850	1813	1813					-0.00626778973492037
APRHVDRSDFF	11	Unmodified	_APRHVDRSDFF_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.5580139160156	3	449.558187	1345.65273	0.25446	0.0001144	-0.22972	-0.00010327	0.024744	1.1124E-05	449.55787102907465	31.888	0.70323	31.929	31.647	32.351	0.040991					62	24	3	0	0	0	0.090382	2	6004	6004;6060		41.567	30.668	1	995410			1505	1369	850	850	1814;1815	1814					-0.00626778973492037
APRIALHTAL	10	Unmodified	_APRIALHTAL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8245239257812	2	531.824558	1061.63456	0.18163	9.6596E-05	0.32555	0.00017313	0.50718	0.00026973	531.824563154447	39.673	0.59734	39.673	39.48	40.078	0					44	21	3	0	0	0	0.16839	2	8385	8385;8431		36.506	19.393	1	533550			1506	3863	851	851	1816;1817	1816					0.10621130842446291
APRIALHTAL	10	Unmodified	_APRIALHTAL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8248901367188	2	531.824558	1061.63456	0.35815	0.00019047	0.047785	2.5413E-05	0.40593	0.00021588	531.8244919506413	39.58	0.47317	39.672	39.47	39.943	0.09267					41	16	3	0	0	0	0.15473	1	8363	8363		38.176	17.722	1	495430			1507	3863	851	851	1818	1818					0.10621130842446291
APRIALHTAL	10	Unmodified	_APRIALHTAL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8246459960938	2	531.824558	1061.63456	0.45648	0.00024276	-0.10455	-5.5604E-05	0.35192	0.00018716	531.824446469323	39.574	0.47044	39.674	39.424	39.894	0.099407					27	16	2	0	0	0	0.21126	1	8348	8348		31.268	14.155	1	509730			1508	3863	851	851	1819	1819					0.10621130842446291
APRKDRQVHL	10	Unmodified	_APRKDRQVHL_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.2386474609375	3	407.238789	1218.69454	-0.38166	-0.00015543	0.27012	0.00011	-0.11154	-4.5423E-05	407.2388809709432	14.433	0.53953	14.433	14.249	14.789	0					54	18	4	0	0	0	0.27239	2	712	712;760		23.801	11.626	1	451830			1509	6693	852	852	1820;1821	1820					0.09393821505705091
APRKDRQVHL	10	Unmodified	_APRKDRQVHL_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.238525390625	3	407.238789	1218.69454	-0.30715	-0.00012508	0.1063	4.3287E-05	-0.20086	-8.1797E-05	407.2388099672678	14.556	0.67217	14.451	14.238	14.91	-0.10466					65	22	4	0	0	0	0.36279	2	747	747;787		10.315	1.339	1	448830			1510	6693	852	852	1822;1823	1822					0.09393821505705091
APRKDRQVHL	10	Unmodified	_APRKDRQVHL_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2386779785156	3	407.238789	1218.69454	-0.33041	-0.00013456	0.18612	7.5796E-05	-0.14429	-5.8761E-05	407.2388162158971	14.548	0.54897	14.482	14.32	14.869	-0.066068					59	19	4	0	0	0	0.31396	2	747	747;796		18.721	18.721	1	471320			1511	6693	852	852	1824;1825	1824					0.09393821505705091
APRKKSPDL	9	Unmodified	_APRKKSPDL_					0	0	0		nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3006896972656	2	506.300916	1010.58728	-0.019888	-1.0069E-05	-0.22471	-0.00011377	-0.2446	-0.00012384	506.30078687850715	13.185	0.41832	13.185	12.977	13.396	0					23	14	2	0	0	0	0.25706	1	356	356		6.7232	6.7232	1	112030			1512	3553	853	853	1826	1826					0.08240851571463281
APRKKSPDL	9	Unmodified	_APRKKSPDL_					0	0	0		nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.3009033203125	2	506.300916	1010.58728	-0.049968	-2.5299E-05	0.31169	0.00015781	0.26172	0.00013251	506.30117426648735	13.243	0.72978	13.144	12.814	13.544	-0.099291					36	25	2	0	0	0	0.25989	1	383	383		14.838	4.0143	1	111220			1513	3553	853	853	1827	1827					0.08240851571463281
APRKKSPDL	9	Unmodified	_APRKKSPDL_					0	0	0		nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.300916	1010.58728	-0.090094	-4.5614E-05	0.19589	9.9178E-05	0.10579	5.3563E-05	506.30096534910393	13.261	0.6357	13.194	12.965	13.6	-0.067495	0.01937	0.00019725	NaN	13.906	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87390			1514	3553	853	853							0.08240851571463281
APRKPDWDL	9	Unmodified	_APRKPDWDL_					0	0	0		ENSG00000160799|ENST00000683445|CCDC12	ENSG00000160799|ENST00000683445|CCDC12	ENSG00000160799|ENST00000683445|CCDC12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2908935546875	2	549.290548	1096.56654	0.52281	0.00028717	-0.85961	-0.00047218	-0.3368	-0.000185	549.2905923399104	35.885	0.65205	35.885	35.604	36.256	0					47	23	3	0	0	0	0.19905	1	7259	7259		23.79	4.3508	1	369130			1515	5490	854	854	1828	1828					0.022122611917893664
APRKPDWDL	9	Unmodified	_APRKPDWDL_					0	0	0		ENSG00000160799|ENST00000683445|CCDC12	ENSG00000160799|ENST00000683445|CCDC12	ENSG00000160799|ENST00000683445|CCDC12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2911987304688	2	549.290548	1096.56654	0.57109	0.00031369	-1.0001	-0.00054933	-0.42898	-0.00023563	549.2905470204579	35.672	0.60297	35.755	35.54	36.143	0.082359					46	21	3	0	0	0	0.13296	1	7224	7224		33.445	14.006	1	350420			1516	5490	854	854	1829	1829					0.022122611917893664
APRKPDWDL	9	Unmodified	_APRKPDWDL_					0	0	0		ENSG00000160799|ENST00000683445|CCDC12	ENSG00000160799|ENST00000683445|CCDC12	ENSG00000160799|ENST00000683445|CCDC12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2908325195312	2	549.290548	1096.56654	0.5166	0.00028376	-0.68924	-0.00037859	-0.17264	-9.4829E-05	549.2905052042499	35.765	0.65209	35.851	35.568	36.22	0.086246					45	23	3	0	0	0	0.21538	1	7202	7202		20.415	12.259	1	431980			1517	5490	854	854	1830	1830					0.022122611917893664
APRKPPQAL	9	Unmodified	_APRKPPQAL_					0	0	0		nc|ENSG00000114993|Q9BST9-3|RTKN;nc|ENSG00000114993|Q9BST9-2|RTKN;ENSG00000114993|ENST00000272430|RTKN	nc|ENSG00000114993|Q9BST9-3|RTKN	nc|ENSG00000114993|Q9BST9-3|RTKN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2989196777344	2	489.298176	976.581799	0.20214	9.8907E-05	0.63905	0.00031269	0.84119	0.00041159	489.298343066215	19.725	0.58393	19.725	19.461	20.045	0					57	20	4	0	0	0	0.11461	1	2349	2349		36.127	15.673	1	349330			1518	2600	855	855	1831	1831					0.09257172779643952
APRKPPQAL	9	Unmodified	_APRKPPQAL_					0	0	0		nc|ENSG00000114993|Q9BST9-3|RTKN;nc|ENSG00000114993|Q9BST9-2|RTKN;ENSG00000114993|ENST00000272430|RTKN	nc|ENSG00000114993|Q9BST9-3|RTKN	nc|ENSG00000114993|Q9BST9-3|RTKN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2979736328125	2	489.298176	976.581799	0.36636	0.00017926	0.83789	0.00040998	1.2043	0.00058924	489.2985163159545	19.872	0.71788	19.756	19.514	20.232	-0.11592					66	24	4	0	0	0	0.006189	2	2357	2357;2409		85.272	41.414	1	371180			1519	2600	855	855	1832;1833	1832					0.09257172779643952
APRKPPQAL	9	Unmodified	_APRKPPQAL_					0	0	0		nc|ENSG00000114993|Q9BST9-3|RTKN;nc|ENSG00000114993|Q9BST9-2|RTKN;ENSG00000114993|ENST00000272430|RTKN	nc|ENSG00000114993|Q9BST9-3|RTKN	nc|ENSG00000114993|Q9BST9-3|RTKN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2992248535156	2	489.298176	976.581799	0.45456	0.00022242	0.82789	0.00040508	1.2825	0.0006275	489.29840233717886	19.799	0.46654	19.744	19.595	20.062	-0.055693					50	16	4	0	0	0	0.012929	3	2353	2342;2353;2398		74.929	31.071	1	419040			1520	2600	855	855	1834;1835;1836	1835					0.09257172779643952
APRKQLAT	8	Unmodified	_APRKQLAT_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73775126-73775255:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7693786621094	2	442.769252	883.52395	-0.12878	-5.7018E-05	0.46327	0.00020512	0.3345	0.00014811	442.7694228502658	13.085	0.41284	13.085	12.952	13.365	0					25	14	2	0	0	0	0.32038	1	326	326		28.487	10.352	1	219830			1521	3640	856	856	1837	1837					0.07752910854230777
APRKQLAT	8	Unmodified	_APRKQLAT_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73775126-73775255:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.769287109375	2	442.769252	883.52395	-0.19854	-8.7906E-05	0.53962	0.00023893	0.34108	0.00015102	442.7694375423869	13.158	0.38126	13.059	12.924	13.306	-0.09929					31	12	3	0	0	0	0.28696	1	345	345		32.305	16.458	1	244130			1522	3640	856	856	1838	1838					0.07752910854230777
APRKQLAT	8	Unmodified	_APRKQLAT_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73775126-73775255:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7693176269531	2	442.769252	883.52395	-0.177	-7.8369E-05	0.7977	0.0003532	0.6207	0.00027483	442.7694961785499	13.128	0.56301	13.06	12.905	13.468	-0.067496					41	19	3	0	0	0	0.39068	1	332	332		20.454	7.9221	1	234090			1523	3640	856	856	1839	1839					0.07752910854230777
APRKQLATK	9	Unmodified	_APRKQLATK_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73775126-73775255:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8165588378906	2	506.816733	1011.61891	-0.037647	-1.908E-05	0.41178	0.0002087	0.37414	0.00018962	506.8168649164156	12.183	0.42769	12.183	12.04	12.468	0					38	16	4	0	0	0	0.15763	1	52	52		29.841	14.592	1	219110			1524	3640	857	857	1840	1840					0.1135684432541666
APRKQLATK	9	Unmodified	_APRKQLATK_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73775126-73775255:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.8166809082031	2	506.816733	1011.61891	0.021753	1.1025E-05	0.4088	0.00020719	0.43056	0.00021821	506.81690277966834	12.177	0.6679	12.08	11.912	12.58	-0.096607					46	25	3	0	0	0	0.25112	1	43	43		16.149	0	1	227710			1525	3640	857	857	1841	1841					0.1135684432541666
APRKQLATK	9	Unmodified	_APRKQLATK_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73775126-73775255:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.81646728515625	2	506.816733	1011.61891	-0.14183	-7.1884E-05	0.4007	0.00020308	0.25887	0.0001312	506.8169208465887	12.197	0.59553	12.129	12.014	12.61	-0.06806					34	22	2	0	0	0	0.21447	1	45	45		21.537	9.2963	1	222200			1526	3640	857	857	1842	1842					0.1135684432541666
APRKQLATKAA	11	Unmodified	_APRKQLATKAA_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73775126-73775255:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.8538208007812	2	577.853847	1153.69314	-0.0080349	-4.643E-06	0.26351	0.00015227	0.25548	0.00014763	577.8539197485068	13.111	0.29463	13.012	12.894	13.189	-0.099291					24	9	4	0	0	0	0.43149	1	339	339		7.1017	3.8204	1	111860			1527	3640	858	858	1843	1843					0.12244187416945351
APRKQLATKAA	11	Unmodified	_APRKQLATKAA_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73775126-73775255:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.85400390625	2	577.853847	1153.69314	-0.14661	-8.4719E-05	0.2564	0.00014816	0.10979	6.3444E-05	577.853855325978	13.086	0.33759	13.018	12.878	13.215	-0.067496					24	11	3	0	0	0	0.38753	1	334	334		12.873	7.1408	1	119920			1528	3640	858	858	1844	1844					0.12244187416945351
APRKSAAAL	9	Unmodified	_APRKSAAAL_					0	0	0		ENST00000555849.5_3_12:57501969-57504177:-|nuORF;ENST00000454075.7_1_12:57501969-57504947:-|nuORF;ENST00000553499.5_3_12:57501969-57525861:-|nuORF;ENST00000553397.5_1_12:57501969-57504947:-|nuORF	ENST00000555849.5_3_12:57501969-57504177:-|nuORF	ENST00000555849.5_3_12:57501969-57504177:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.76922607421875	2	442.769252	883.52395	-0.10052	-4.4509E-05	0.31363	0.00013887	0.21311	9.4359E-05	442.76929597202803	14.18	0.77332	14.18	13.902	14.676	0					62	26	4	0	0	0	0.0079761	1	643	643		82.529	42.572	1	697110			1529	10677	859	859	1845	1845					0.0775291085420804
APRKSAAAL	9	Unmodified	_APRKSAAAL_					0	0	0		ENST00000555849.5_3_12:57501969-57504177:-|nuORF;ENST00000454075.7_1_12:57501969-57504947:-|nuORF;ENST00000553499.5_3_12:57501969-57525861:-|nuORF;ENST00000553397.5_1_12:57501969-57504947:-|nuORF	ENST00000555849.5_3_12:57501969-57504177:-|nuORF	ENST00000555849.5_3_12:57501969-57504177:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.7692565917969	2	442.769252	883.52395	-0.18862	-8.3515E-05	0.39658	0.00017559	0.20796	9.2079E-05	442.7693138373991	14.253	0.71885	14.148	13.873	14.592	-0.10466					61	24	4	0	0	0	0.0037449	1	666	666		96.367	52.508	1	754680			1530	10677	859	859	1846	1846					0.0775291085420804
APRKSAAAL	9	Unmodified	_APRKSAAAL_					0	0	0		ENST00000555849.5_3_12:57501969-57504177:-|nuORF;ENST00000454075.7_1_12:57501969-57504947:-|nuORF;ENST00000553499.5_3_12:57501969-57525861:-|nuORF;ENST00000553397.5_1_12:57501969-57504947:-|nuORF	ENST00000555849.5_3_12:57501969-57504177:-|nuORF	ENST00000555849.5_3_12:57501969-57504177:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.76904296875	2	442.769252	883.52395	-0.10904	-4.828E-05	0.43013	0.00019045	0.32109	0.00014217	442.769335278695	14.266	0.8098	14.2	13.889	14.699	-0.066068					66	28	4	0	0	0	0.018449	1	657	657		66.457	35.188	1	634440			1531	10677	859	859	1847	1847					0.0775291085420804
APRKVSGSF	9	Unmodified	_APRKVSGSF_					0	0	0		nc|ENSG00000164877|Q8IY33-3|MICALL2;ENST00000467394.5_1_7:1474234-1480903:-|nuORF;ENST00000472100.5_1_7:1474569-1480903:-|nuORF;nc|ENSG00000164877|Q8IY33-2|MICALL2;nc|ENSG00000164877|Q8IY33-5|MICALL2;ENSG00000164877|ENST00000297508|MICALL2	nc|ENSG00000164877|Q8IY33-3|MICALL2	nc|ENSG00000164877|Q8IY33-3|MICALL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7662658691406	2	474.766709	947.518865	0.10631	5.0474E-05	-0.40232	-0.00019101	-0.29601	-0.00014053	474.7664099535551	17.322	0.67392	17.322	17.097	17.771	0					57	23	3	0	0	0	0.016723	2	1579	1579;1622		69.105	38.468	1	297210			1532	5888	860	860	1848;1849	1848					0.04300606991625955
APRKVSGSF	9	Unmodified	_APRKVSGSF_					0	0	0		nc|ENSG00000164877|Q8IY33-3|MICALL2;ENST00000467394.5_1_7:1474234-1480903:-|nuORF;ENST00000472100.5_1_7:1474569-1480903:-|nuORF;nc|ENSG00000164877|Q8IY33-2|MICALL2;nc|ENSG00000164877|Q8IY33-5|MICALL2;ENSG00000164877|ENST00000297508|MICALL2	nc|ENSG00000164877|Q8IY33-3|MICALL2	nc|ENSG00000164877|Q8IY33-3|MICALL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7666931152344	2	474.766709	947.518865	0.052422	2.4888E-05	-0.049065	-2.3294E-05	0.0033572	1.5939E-06	474.7665173984499	17.52	0.60376	17.403	17.18	17.784	-0.11739					48	20	4	0	0	0	0.026579	2	1652	1652;1698		61.602	33.973	1	304210			1533	5888	860	860	1850;1851	1850					0.04300606991625955
APRKVSGSF	9	Unmodified	_APRKVSGSF_					0	0	0		nc|ENSG00000164877|Q8IY33-3|MICALL2;ENST00000467394.5_1_7:1474234-1480903:-|nuORF;ENST00000472100.5_1_7:1474569-1480903:-|nuORF;nc|ENSG00000164877|Q8IY33-2|MICALL2;nc|ENSG00000164877|Q8IY33-5|MICALL2;ENSG00000164877|ENST00000297508|MICALL2	nc|ENSG00000164877|Q8IY33-3|MICALL2	nc|ENSG00000164877|Q8IY33-3|MICALL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.76666259765625	2	474.766709	947.518865	0.22406	0.00010638	-0.58917	-0.00027972	-0.36511	-0.00017334	474.76633015854725	17.478	0.60661	17.418	17.129	17.736	-0.060431					47	20	3	0	0	0	0.064268	2	1655	1604;1655		47.594	23.574	1	281320			1534	5888	860	860	1852;1853	1853					0.04300606991625955
APRLETKSL	9	Unmodified	_APRLETKSL_					0	0	0		nc|ENSG00000091542|Q6P6C2-3|ALKBH5;ENSG00000091542|ENST00000399138|ALKBH5;nc|ENSG00000091542|Q6P6C2-1|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.30206298828125	2	507.800749	1013.58694	0.19332	9.817E-05	-0.44957	-0.00022829	-0.25624	-0.00013012	507.8004913355174	26.337	0.91639	26.337	26.009	26.925	0					83	31	4	0	0	0	0.01909	2	4352	4341;4352		65.474	13.496	1	1210600			1535	1406	861	861	1854;1855	1855					0.08069431851606623
APRLETKSL	9	Unmodified	_APRLETKSL_					0	0	0		nc|ENSG00000091542|Q6P6C2-3|ALKBH5;ENSG00000091542|ENST00000399138|ALKBH5;nc|ENSG00000091542|Q6P6C2-1|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.8006286621094	2	507.800749	1013.58694	0.16045	8.1477E-05	-0.46215	-0.00023468	-0.3017	-0.0001532	507.8004831722126	26.369	1.0121	26.331	25.985	26.998	-0.038671					92	35	4	0	0	0	0.01909	1	4299	4299		65.474	10.239	1	1267900			1536	1406	861	861	1856	1856					0.08069431851606623
APRLGLSL	8	Unmodified	_APRLGLSL_					0	0	0			REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.7608947753906	2	413.760895	825.507237	0.39615	0.00016391	-0.075024	-3.1042E-05	0.32112	0.00013287	413.76080024518546	50.758	0.73358	50.758	50.489	51.222	0					69	26	4	0	0	0	0.048928	2	11794	11794;11845		78.728	0	1	2662000	+		1537	21440	862	862	1857;1858	1857					0.08750409968274653
APRLGLSL	8	Unmodified	_APRLGLSL_					0	0	0			REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.7608642578125	2	413.760895	825.507237	0.64309	0.00026609	-0.31235	-0.00012924	0.33074	0.00013685	413.76069754059	50.75	0.82573	50.797	50.522	51.347	0.046577					75	30	4	0	0	0	0.04227	1	11795	11795		81.89	0	1	2538700	+		1538	21440	862	862	1859	1859					0.08750409968274653
APRLGLSL	8	Unmodified	_APRLGLSL_					0	0	0			REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.7608642578125	2	413.760895	825.507237	0.65511	0.00027106	-0.29368	-0.00012151	0.36143	0.00014954	413.760693279235	50.779	0.73145	50.789	50.541	51.272	0.0095673					73	27	4	0	0	0	0.04227	1	11795	11795		81.89	0	1	2440800	+		1539	21440	862	862	1860	1860					0.08750409968274653
APRLGLSL	8	Unmodified	_APRLGLSL_					0	0	0			REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	413.760895	825.507237	0.39615	0.00016391	-0.075024	-3.1042E-05	0.32112	0.00013287	413.76080024518546	50.758	0.73358	50.758	50.489	51.222	0	-0.023431	0.00011246	NaN	81.89	69	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2662000	+		1540	21440	862	862							0.08750409968274653
APRLGLSL	8	Unmodified	_APRLGLSL_					0	0	0			REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	413.760895	825.507237	0.64309	0.00026609	-0.31235	-0.00012924	0.33074	0.00013685	413.76069754059	50.75	0.82573	50.797	50.522	51.347	0.046577	0.015927	-8.3937E-05	NaN	81.89	75	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2538700	+		1541	21440	862	862							0.08750409968274653
APRLGLSL	8	Unmodified	_APRLGLSL_					0	0	0			REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	413.760895	825.507237	0.65511	0.00027106	-0.29368	-0.00012151	0.36143	0.00014954	413.760693279235	50.779	0.73145	50.789	50.541	51.272	0.0095673	0.0075049	-6.8485E-05	NaN	81.89	73	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2440800	+		1542	21440	862	862							0.08750409968274653
APRLNSADRPM	11	Oxidation (M)	_APRLNSADRPM(Oxidation (M))_		APRLNSADRPM(1)		APRLNSADRPM(120)	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.2122497558594	3	415.211911	1242.6139	0.015941	6.619E-06	-0.67216	-0.00027909	-0.65622	-0.00027247	415.21216925740174	20.441	1.6413	20.441	19.96	21.601	0					211	58	6	0	0	0	1.9719E-05	3	2505	2458;2505;2549		115.15	90.271	1	8411200			1543	12890	863	863	1861;1862;1863	1862		985			0.0023017240048375243
APRLNSADRPM	11	Oxidation (M)	_APRLNSADRPM(Oxidation (M))_		APRLNSADRPM(1)		APRLNSADRPM(83)	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3147583007812	2	622.314229	1242.6139	0.34882	0.00021708	0.056415	3.5108E-05	0.40524	0.00025219	622.3143282194346	20.396	1.0554	20.396	20.113	21.169	0					104	37	4	0	0	0	0.0035703	2	2506	2506;2550		83.278	57.01	1	1218400			1544	12890	863	863	1864;1865	1864		985			0.0023017240048375243
APRLNSADRPM	11	Oxidation (M)	_APRLNSADRPM(Oxidation (M))_		APRLNSADRPM(1)		APRLNSADRPM(130)	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.212158203125	3	415.211911	1242.6139	0.53485	0.00022208	-1.2447	-0.0005168	-0.7098	-0.00029472	415.21192079591134	20.67	1.5743	20.56	20.132	21.706	-0.11003					189	56	5	0	0	0	5.9251E-06	3	2568	2527;2568;2613		128.14	105.36	1	8929000			1545	12890	863	863	1866;1867;1868	1867		985			0.0023017240048375243
APRLNSADRPM	11	Oxidation (M)	_APRLNSADRPM(Oxidation (M))_		APRLNSADRPM(1)		APRLNSADRPM(97)	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3145141601562	2	622.314229	1242.6139	0.34185	0.00021274	-0.026133	-1.6263E-05	0.31572	0.00019647	622.3142903253881	20.633	0.96662	20.523	20.238	21.205	-0.11003					101	34	5	0	0	0	0.00097064	2	2631	2588;2631		97.284	71.016	1	1317400			1546	12890	863	863	1869;1870	1870		985			0.0023017240048375243
APRLNSADRPM	11	Oxidation (M)	_APRLNSADRPM(Oxidation (M))_		APRLNSADRPM(1)		APRLNSADRPM(120)	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.2121276855469	3	415.211911	1242.6139	0.51196	0.00021257	-1.1094	-0.00046062	-0.59741	-0.00024805	415.2119798431827	20.533	1.6782	20.48	20.093	21.771	-0.05291					194	59	5	0	0	0	1.9719E-05	3	2535	2486;2535;2576		115.15	90.271	1	9427300			1547	12890	863	863	1871;1872;1873	1872		985			0.0023017240048375243
APRLNSADRPM	11	Oxidation (M)	_APRLNSADRPM(Oxidation (M))_		APRLNSADRPM(1)		APRLNSADRPM(100)	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3145751953125	2	622.314229	1242.6139	0.48901	0.00030432	-0.22299	-0.00013877	0.26602	0.00016555	622.3142327676013	20.508	0.93707	20.455	20.151	21.088	-0.05291					105	33	5	0	0	0	0.00059316	2	2555	2555;2606		102.55	76.281	1	1390700			1548	12890	863	863	1874;1875	1874		985			0.0023017240048375243
APRLPITGL	9	Unmodified	_APRLPITGL_					0	0	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2950439453125	2	469.295102	936.575651	0.53861	0.00025277	-0.9915	-0.0004653	-0.45289	-0.00021254	469.2945200199104	56.272	1.2596	56.272	55.882	57.141	0					114	46	4	0	0	0	0.0037449	2	13485	13437;13485		96.367	34.063	1	7372500			1549	6191	864	864	1876;1877	1877					0.10482654548115988
APRLPITGL	9	Unmodified	_APRLPITGL_					0	0	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.2951354980469	2	469.295102	936.575651	0.63259	0.00029687	-1.1033	-0.00051779	-0.47075	-0.00022092	469.2944554164892	56.192	1.128	56.271	55.912	57.04	0.078674					95	41	4	0	0	0	0.0037449	3	13468	13414;13421;13468		96.367	34.627	1	7089300			1550	6191	864	864	1878;1879;1880	1880					0.10482654548115988
APRLPITGL	9	Unmodified	_APRLPITGL_					0	0	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.29534912109375	2	469.295102	936.575651	0.84097	0.00039466	-1.0261	-0.00048156	-0.18516	-8.6896E-05	469.2945377419656	56.292	1.1199	56.273	55.884	57.004	-0.019081					95	40	3	0	0	0	0.0037449	3	13483	13438;13483;13546		96.367	32.406	1	9904800			1551	6191	864	864	1881;1882;1883	1882					0.10482654548115988
APRLQSEVAEL	11	Unmodified	_APRLQSEVAEL_					0	0	0		nc|ENSG00000182149|P53990-3|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.833251953125	2	606.832777	1211.651	0.70688	0.00042896	0.17606	0.00010684	0.88294	0.0005358	606.8327958956642	47.828	0.98651	47.828	47.493	48.48	0					77	34	4	0	0	0	2.4288E-09	3	10880	10835;10880;10936		153.7	60.533	1	8761100			1552	12871	865	865	1884;1885;1886	1885					0.05364167217908289
APRLQSEVAEL	11	Unmodified	_APRLQSEVAEL_					0	0	0		nc|ENSG00000182149|P53990-3|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8329467773438	2	606.832777	1211.651	0.79343	0.00048148	-0.16337	-9.9141E-05	0.63005	0.00038234	606.8326305533872	47.765	0.9084	47.813	47.482	48.39	0.047523					84	33	5	0	0	0	1.0544E-08	3	10866	10813;10866;10911		142.94	68.741	1	8143700			1553	12871	865	865	1887;1888;1889	1888					0.05364167217908289
APRLQSEVAEL	11	Unmodified	_APRLQSEVAEL_					0	0	0		nc|ENSG00000182149|P53990-3|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8331298828125	2	606.832777	1211.651	0.57402	0.00034834	0.09912	6.0149E-05	0.67314	0.00040849	606.8327603800632	47.738	0.83956	47.781	47.48	48.32	0.04332					90	31	7	0	0	0	1.0544E-08	2	10849	10849;10913		142.94	59.512	1	9594800			1554	12871	865	865	1890;1891	1890					0.05364167217908289
APRLSRPITL	10	Unmodified	_APRLSRPITL_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.797119140625	2	562.35094	1122.68733	0.24124	0.00013566	-0.088171	-4.9583E-05	0.15306	8.6076E-05	562.3508006431947	39.584	0.46771	39.684	39.481	39.949	0.099407					29	16	2	0	0	0	0.31401	1	8337	8337		14.405	5.66	1	280050			1555	1332	866	866	1892	1892					0.13089088905257995
APRLTLLL	8	Unmodified	_APRLTLLL_					0	0	0			REV__ENST00000274203.13_1_5:16936005-16936380:-|nuORF	REV__ENST00000274203.13_1_5:16936005-16936380:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.8000183105469	2	448.80002	895.585488	0.47064	0.00021122	-0.2703	-0.00012131	0.20034	8.9913E-05	448.799776747579	64.213	0.78568	64.213	63.941	64.727	0					71	28	3	0	0	0	0.072895	1	15970	15970		67.344	3.781	1	1814900	+		1556	19686	867	867	1893	1893					0.1335184255351578
APRLTLLL	8	Unmodified	_APRLTLLL_					0	0	0			REV__ENST00000274203.13_1_5:16936005-16936380:-|nuORF	REV__ENST00000274203.13_1_5:16936005-16936380:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.79998779296875	2	448.80002	895.585488	0.32654	0.00014655	-0.18646	-8.3684E-05	0.14008	6.2868E-05	448.79981985283166	64.138	0.81823	64.231	63.927	64.746	0.092888					80	29	4	0	0	0	0.072895	1	15933	15933		67.344	3.781	1	1898400	+		1557	19686	867	867	1894	1894					0.1335184255351578
APRLTLLL	8	Unmodified	_APRLTLLL_					0	0	0			REV__ENST00000274203.13_1_5:16936005-16936380:-|nuORF	REV__ENST00000274203.13_1_5:16936005-16936380:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.79986572265625	2	448.80002	895.585488	0.45216	0.00020293	-0.29589	-0.00013279	0.15628	7.0137E-05	448.7997554145922	64.284	0.8485	64.274	63.962	64.811	-0.0095291					85	30	4	0	0	0	0.072895	1	15963	15963		67.344	3.781	1	1798100	+		1558	19686	867	867	1895	1895					0.1335184255351578
APRMLGHQP	9	Unmodified	_APRMLGHQP_					0	0	0		ENSG00000128313|ENST00000249044|APOL5	ENSG00000128313|ENST00000249044|APOL5	ENSG00000128313|ENST00000249044|APOL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.7655944824219	2	503.766186	1005.51782	0.28889	0.00014553	-1.1732	-0.00059103	-0.88432	-0.00044549	503.7655508728154	16.516	0.4375	16.453	16.266	16.703	-0.062534					23	14	2	0	0	0	0.33276	1	1360	1360		3.9444	1.0552	1	134660			1559	3363	868	868	1896	1896					0.015280693510703713
APRNGSGVAL	10	Unmodified	_APRNGSGVAL_					0	0	0		ENSG00000122547|ENST00000242108|EEPD1	ENSG00000122547|ENST00000242108|EEPD1	ENSG00000122547|ENST00000242108|EEPD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2617492675781	2	471.261791	940.509028	0.047979	2.2611E-05	-0.35253	-0.00016613	-0.30455	-0.00014352	471.2615375255771	24.919	0.51374	24.919	24.639	25.153	0					43	17	3	0	0	0	0.30872	2	3881	3881;3917		19.362	3.2128	1	213770			1560	3050	869	869	1897;1898	1897					0.03639418986244891
APRNGSGVAL	10	Unmodified	_APRNGSGVAL_					0	0	0		ENSG00000122547|ENST00000242108|EEPD1	ENSG00000122547|ENST00000242108|EEPD1	ENSG00000122547|ENST00000242108|EEPD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2615661621094	2	471.261791	940.509028	0.02802	1.3205E-05	-0.25796	-0.00012157	-0.22994	-0.00010836	471.26159231605425	24.958	0.58862	24.902	24.661	25.25	-0.055931					49	20	3	0	0	0	0.19345	2	3922	3922;3948		33.445	11.698	1	293400			1561	3050	869	869	1899;1900	1899					0.03639418986244891
APRNIHRHVIL	11	Unmodified	_APRNIHRHVIL_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570217.1_1_16:89972581-89984411:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;ENST00000570116.6_1_16:89971082-89977643:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.6018981933594	3	442.60195	1324.78402	0.16187	7.1644E-05	-0.11561	-5.1168E-05	0.046262	2.0476E-05	442.6018653540753	21.876	1.4526	21.876	21.31	22.763	0					123	51	4	0	0	0	0.19522	2	2998	2948;2998		31.636	22.092	1	1030200			1562	4351	870	870	1901;1902	1902					0.1346207618507833
APRNIHRHVIL	11	Unmodified	_APRNIHRHVIL_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570217.1_1_16:89972581-89984411:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;ENST00000570116.6_1_16:89971082-89977643:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.6019592285156	3	442.60195	1324.78402	0.13262	5.8698E-05	-0.058449	-2.587E-05	0.074171	3.2828E-05	442.60190045563405	21.947	1.2516	21.847	21.498	22.749	-0.10034					80	45	2	0	0	0	0.15687	1	2991	2991		35.08	20.862	1	1344000			1563	4351	870	870	1903	1903					0.1346207618507833
APRNIHRHVIL	11	Unmodified	_APRNIHRHVIL_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570217.1_1_16:89972581-89984411:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;ENST00000570116.6_1_16:89971082-89977643:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.6019592285156	3	442.60195	1324.78402	0.098904	4.3775E-05	0.056883	2.5176E-05	0.15579	6.8952E-05	442.60192378003234	21.977	1.3458	21.928	21.574	22.92	-0.049377					128	47	4	0	0	0	0.19522	3	3014	2972;3014;3083		31.636	25.444	1	1056400			1564	4351	870	870	1904;1905;1906	1905					0.1346207618507833
APRNLRLTYL	10	Unmodified	_APRNLRLTYL_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.24346923828125	3	406.24354	1215.70879	-0.017832	-7.244E-06	-0.20843	-8.4673E-05	-0.22626	-9.1917E-05	406.24346786891	44.259	1.216	44.259	43.959	45.175	0					105	44	4	0	0	0	0.27239	2	9823	9773;9823		23.801	6.9627	1	3337900			1565	1332	871	871	1907;1908	1908					0.10956473933993038
APRNLRLTYL	10	Unmodified	_APRNLRLTYL_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8619995117188	2	608.861672	1215.70879	0.43777	0.00026654	0.26193	0.00015948	0.6997	0.00042602	608.8617740894496	44.306	0.56617	44.306	44.039	44.605	0					44	20	3	0	0	0	0.026454	1	9795	9795		74.2	32.244	1	1191700			1566	1332	871	871	1909	1909					0.10956473933993038
APRNLRLTYL	10	Unmodified	_APRNLRLTYL_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.243408203125	3	406.24354	1215.70879	-0.011573	-4.7013E-06	-0.14209	-5.7725E-05	-0.15367	-6.2426E-05	406.2434552125791	44.041	0.95797	44.118	43.816	44.774	0.077515					92	35	4	0	0	0	0.32099	2	9745	9696;9745		17.863	5.6884	1	3243800			1567	1332	871	871	1910;1911	1911					0.10956473933993038
APRNLRLTYL	10	Unmodified	_APRNLRLTYL_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8621215820312	2	608.861672	1215.70879	0.45286	0.00027573	0.2772	0.00016878	0.73006	0.00044451	608.8619236336089	44.018	0.70788	44.095	43.841	44.549	0.077515					51	26	3	0	0	0	0.058265	2	9715	9715;9759		65.474	46.112	1	944690			1568	1332	871	871	1912;1913	1912					0.10956473933993038
APRNLRLTYL	10	Unmodified	_APRNLRLTYL_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.24346923828125	3	406.24354	1215.70879	-0.062108	-2.5231E-05	-0.26119	-0.00010611	-0.3233	-0.00013134	406.24342551806603	43.983	1.1027	44.067	43.765	44.868	0.083992					96	40	4	0	0	0	0.2361	2	9678	9678;9728		28.234	10.662	1	3365500			1569	1332	871	871	1914;1915	1914					0.10956473933993038
APRNLRLTYL	10	Unmodified	_APRNLRLTYL_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8621215820312	2	608.861672	1215.70879	0.27134	0.00016521	0.39591	0.00024106	0.66725	0.00040626	608.8619252097525	43.999	0.59227	44.083	43.866	44.458	0.083996					50	21	3	0	0	0	0.058265	1	9711	9711		65.474	30.542	1	1216000			1570	1332	871	871	1916	1916					0.10956473933993038
APRNRGSGF	9	Unmodified	_APRNRGSGF_					0	0	0		ENSG00000198492|ENST00000373812|YTHDF2;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	ENSG00000198492|ENST00000373812|YTHDF2	ENSG00000198492|ENST00000373812|YTHDF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.251708984375	2	481.251757	960.488962	-0.087414	-4.2068E-05	0.14772	7.109E-05	0.060306	2.9022E-05	481.2516832452515	13.907	0.68721	13.841	13.602	14.289	-0.066068					43	23	4	0	0	0	0.24688	1	567	567		14.838	6.245	1	313790			1571	8080	872	872	1917	1917					0.007136680462849654
APRNRGSGF	9	Unmodified	_APRNRGSGF_					0	0	0		ENSG00000198492|ENST00000373812|YTHDF2;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	ENSG00000198492|ENST00000373812|YTHDF2	ENSG00000198492|ENST00000373812|YTHDF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	481.251757	960.488962	-0.12658	-6.0917E-05	0.046512	2.2384E-05	-0.080068	-3.8533E-05	481.25164850767806	13.917	0.88519	13.813	13.3	14.185	-0.10466	-0.017603	-4.6885E-05	NaN	30.637	54	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261600			1572	8080	872	872							0.007136680462849654
APRNSPTGL	9	Unmodified	_APRNSPTGL_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;nc|ENSG00000125386|P78312-3|FAM193A;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7486572265625	2	456.748516	911.482479	0.092525	4.2261E-05	0.6429	0.00029364	0.73542	0.0003359	456.748625580937	22.203	0.50261	22.103	21.888	22.39	-0.10034					32	18	2	0	0	0	0.18208	1	3078	3078		26.268	3.5319	1	92048			1573	3201	873	873	1918	1918					0.023197300948936572
APRPAGSYL	9	Unmodified	_APRPAGSYL_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.25311279296875	2	466.253434	930.492316	0.35611	0.00016604	-0.48519	-0.00022622	-0.12908	-6.0184E-05	466.25308342005405	32.234	0.72311	32.289	32.007	32.73	0.055309					57	25	3	0	0	0	0.10058	1	6104	6104		53.833	30.684	1	487010			1574	7131	874	874	1919	1919					0.024289181002814075
APRPAGSYL	9	Unmodified	_APRPAGSYL_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.25311279296875	2	466.253434	930.492316	0.23294	0.00010861	-0.35688	-0.0001664	-0.12394	-5.7789E-05	466.2531541554922	32.255	0.7188	32.309	32.02	32.739	0.054375					58	25	3	0	0	0	0.08298	1	6180	6180		60.074	31.587	1	535640			1575	7131	874	874	1920	1920					0.024289181002814075
APRPDRLVNRL	11	Unmodified	_APRPDRLVNRL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.26214599609375	3	436.261594	1305.76295	-0.068095	-2.9707E-05	-0.34877	-0.00015216	-0.41687	-0.00018186	436.26177338637814	33.377	1.8967	33.377	32.692	34.588	0					223	67	5	0	0	0	0.00077113	4	6468	6421;6468;6513;6557		100.07	66.245	1	14535000			1576	405	875	875	1921;1922;1923;1924	1922					0.12230066085544422
APRPDRLVNRL	11	Unmodified	_APRPDRLVNRL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.261962890625	3	436.261594	1305.76295	0.032848	1.433E-05	-0.48006	-0.00020943	-0.44721	-0.0001951	436.2617003860088	33.213	1.9651	33.268	32.645	34.611	0.055309					227	70	5	0	0	0	9.958E-06	4	6418	6376;6418;6461;6511		124.34	84.417	1	16595000			1577	405	875	875	1925;1926;1927;1928	1926					0.12230066085544422
APRPDRLVNRL	11	Unmodified	_APRPDRLVNRL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.2621765136719	3	436.261594	1305.76295	-0.12887	-5.6223E-05	-0.026027	-1.1355E-05	-0.1549	-6.7578E-05	436.2619144958017	33.212	1.764	33.266	32.603	34.367	0.054375					221	63	5	0	0	0	9.958E-06	4	6423	6380;6423;6466;6511		124.34	87.089	1	16995000			1578	405	875	875	1929;1930;1931;1932	1930					0.12230066085544422
APRPDSRHHSL	11	Unmodified	_APRPDSRHHSL_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34;ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.89007568359375	3	424.890048	1271.64832	-0.3681	-0.0001564	0.14065	5.9763E-05	-0.22744	-9.6638E-05	424.89023273916894	14.19	0.8827	14.19	13.962	14.845	0					98	30	5	0	0	0	0.15094	2	674	628;674		24.229	9.2714	1	2348300			1579	6491	876	876	1933;1934	1934					0.023357566036111166
APRPDSRHHSL	11	Unmodified	_APRPDSRHHSL_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34;ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.8311157226562	2	636.831434	1271.64832	0.017233	1.0974E-05	0.32326	0.00020586	0.3405	0.00021684	636.8315878695156	14.191	0.42441	14.191	14.024	14.448	0					40	14	4	0	0	0	0.062106	1	638	638		49.742	38.942	1	277660			1580	6491	876	876	1935	1935					0.023357566036111166
APRPDSRHHSL	11	Unmodified	_APRPDSRHHSL_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34;ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.89013671875	3	424.890048	1271.64832	-0.41636	-0.00017691	0.18825	7.9986E-05	-0.22811	-9.692E-05	424.89025147703404	14.318	0.94916	14.213	13.961	14.91	-0.10466					102	32	6	0	0	0	0.13465	3	717	667;717;762		30.354	12.015	1	2302600			1581	6491	876	876	1936;1937;1938	1937					0.023357566036111166
APRPDSRHHSL	11	Unmodified	_APRPDSRHHSL_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34;ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.8319091796875	2	636.831434	1271.64832	0.23096	0.00014708	0.12491	7.955E-05	0.35588	0.00022663	636.8314828573641	14.308	0.46271	14.203	13.991	14.454	-0.10466					42	15	4	0	0	0	0.16642	1	683	683		34.222	24.839	1	257020			1582	6491	876	876	1939	1939					0.023357566036111166
APRPDSRHHSL	11	Unmodified	_APRPDSRHHSL_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34;ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.89019775390625	3	424.890048	1271.64832	-0.3692	-0.00015687	0.16381	6.96E-05	-0.20539	-8.7269E-05	424.89023574882793	14.292	0.92068	14.226	13.949	14.869	-0.066068					109	32	5	0	0	0	0.062849	3	696	648;696;738		47.053	23.089	1	2065500			1583	6491	876	876	1940;1941;1942	1941					0.023357566036111166
APRPDSRHHSL	11	Unmodified	_APRPDSRHHSL_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34;ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.8316650390625	2	636.831434	1271.64832	0.26501	0.00016877	0.096217	6.1274E-05	0.36123	0.00023004	636.831523914621	14.284	0.53007	14.218	14.007	14.537	-0.066068					45	18	3	0	0	0	0.18116	2	671	671;719		32.898	26.267	1	207350			1584	6491	876	876	1943;1944	1943					0.023357566036111166
APRPFPEVSL	10	Unmodified	_APRPFPEVSL_					0	0	0		ENSG00000161996|ENST00000293879|WDR90;ENST00000552943.5_1_16:699416-703842:+|nuORF;nc|ENSG00000161996|Q96KV7-3|WDR90;ENST00000420061.6_1_16:699416-706047:+|nuORF;nc|ENSG00000161996|Q96KV7-5|WDR90;ENST00000549648.5_1_16:699416-706047:+|nuORF	ENSG00000161996|ENST00000293879|WDR90	ENSG00000161996|ENST00000293879|WDR90	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2579345703125	2	556.808574	1111.60259	0.58525	0.00032587	0.018436	1.0266E-05	0.60369	0.00033614	556.8083949915506	58.282	0.57273	58.265	57.977	58.55	-0.017197					37	20	2	0	0	0	0.28108	1	14154	14154		28.495	10.348	1	427720			1585	5540	877	877	1945	1945					0.051257183686630015
APRPGLLSL	9	Unmodified	_APRPGLLSL_					0	0	0		nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ	nc|ENSG00000011451|O95785-3|WIZ	nc|ENSG00000011451|O95785-3|WIZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.2873840332031	2	462.287277	922.560001	0.010197	4.7138E-06	0.56439	0.00026091	0.57458	0.00026562	462.28740589421056	52.239	0.96097	52.239	51.914	52.875	0					79	34	3	0	0	0	0.0059482	2	12273	12229;12273		85.642	20.406	1	2605500			1586	443	878	878	1946;1947	1947					0.09562368031083679
APRPGLLSL	9	Unmodified	_APRPGLLSL_					0	0	0		nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ	nc|ENSG00000011451|O95785-3|WIZ	nc|ENSG00000011451|O95785-3|WIZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.2873229980469	2	462.287277	922.560001	0.08955	4.1398E-05	0.37944	0.00017541	0.46899	0.00021681	462.28734957957283	52.235	1.1735	52.285	51.9	53.073	0.050571					74	42	2	0	0	0	0.012386	1	12261	12261		75.761	10.526	1	2704200			1587	443	878	878	1948	1948					0.09562368031083679
APRPGLLSL	9	Unmodified	_APRPGLLSL_					0	0	0		nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ	nc|ENSG00000011451|O95785-3|WIZ	nc|ENSG00000011451|O95785-3|WIZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.2874755859375	2	462.287277	922.560001	0.026407	1.2208E-05	0.72321	0.00033433	0.74962	0.00034654	462.2874807856065	52.347	1.2463	52.346	51.954	53.2	-0.00081253					103	45	4	0	0	0	0.0037772	1	12259	12259		96.111	21.182	1	2707800			1588	443	878	878	1949	1949					0.09562368031083679
APRPGVLLL	9	Unmodified	_APRPGVLLL_					0	0	0		nc|ENSG00000049540|P15502-11|ELN;nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN;ENST00000480728.5_1_7:73442517-73457477:+|nuORF;ENST00000468517.5_1_7:73442517-73457477:+|nuORF	nc|ENSG00000049540|P15502-11|ELN	nc|ENSG00000049540|P15502-11|ELN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.3055419921875	2	468.30547	934.596387	0.40418	0.00018928	-0.18699	-8.7566E-05	0.21719	0.00010171	468.3053021537102	54.753	1.1335	54.753	54.405	55.539	0					112	41	4	0	0	0	0.044952	2	13028	13028;13120		54.774	5.1046	1	8928500			1589	651	879	879	1950;1951	1950					0.12647244927802603
APRPGVLLL	9	Unmodified	_APRPGVLLL_					0	0	0		nc|ENSG00000049540|P15502-11|ELN;nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN;ENST00000480728.5_1_7:73442517-73457477:+|nuORF;ENST00000468517.5_1_7:73442517-73457477:+|nuORF	nc|ENSG00000049540|P15502-11|ELN	nc|ENSG00000049540|P15502-11|ELN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.30548095703125	2	468.30547	934.596387	0.38527	0.00018042	-0.27542	-0.00012898	0.10985	5.1443E-05	468.305265994675	54.708	1.2362	54.771	54.459	55.695	0.063202					110	45	4	0	0	0	0.068501	4	12966	12966;13012;13060;13114		46.021	11.834	1	9745600			1590	651	879	879	1952;1953;1954;1955	1952					0.12647244927802603
APRPGVLLL	9	Unmodified	_APRPGVLLL_					0	0	0		nc|ENSG00000049540|P15502-11|ELN;nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN;ENST00000480728.5_1_7:73442517-73457477:+|nuORF;ENST00000468517.5_1_7:73442517-73457477:+|nuORF	nc|ENSG00000049540|P15502-11|ELN	nc|ENSG00000049540|P15502-11|ELN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.3055419921875	2	468.30547	934.596387	0.54666	0.000256	-0.40491	-0.00018962	0.14175	6.638E-05	468.3052150298512	54.797	1.1537	54.782	54.415	55.569	-0.015919					111	41	4	0	0	0	0.044952	3	13032	13032;13081;13141		54.774	14.325	1	9980200			1591	651	879	879	1956;1957;1958	1956					0.12647244927802603
APRPPPKPM	9	Oxidation (M)	_APRPPPKPM(Oxidation (M))_		APRPPPKPM(1)		APRPPPKPM(82)	0	0	1		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.77923583984375	2	503.778762	1005.54297	0.054353	2.7382E-05	0.37934	0.00019111	0.4337	0.00021849	503.7789333390709	15.281	2.8161	15.281	13.872	16.689	0					265	98	5	0	0	0	0.0083926	3	932	932;978;1025		81.89	55.007	1	1974900			1592	7993	880	880	1959;1960;1961	1959		871			0.040421241536364505
APRPPPKPM	9	Oxidation (M)	_APRPPPKPM(Oxidation (M))_		APRPPPKPM(1)		APRPPPKPM(79)	0	0	1		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.779052734375	2	503.778762	1005.54297	0.099296	5.0023E-05	0.43235	0.00021781	0.53165	0.00026783	503.77890475914205	15.385	2.9695	15.275	13.784	16.754	-0.10981					230	103	3	0	0	0	0.010453	4	1050	958;1005;1050;1091		78.728	51.844	1	1973900			1593	7993	880	880	1962;1963;1964;1965	1964		871			0.040421241536364505
APRPPPKPM	9	Oxidation (M)	_APRPPPKPM(Oxidation (M))_		APRPPPKPM(1)		APRPPPKPM(79)	0	0	1		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.779296875	2	503.778762	1005.54297	0.054956	2.7686E-05	0.3545	0.00017859	0.40946	0.00020628	503.7789395687088	15.354	2.9257	15.29	13.776	16.701	-0.064414					234	101	5	0	0	0	0.010453	4	975	930;975;1018;1066		78.728	44.626	1	2144000			1594	7993	880	880	1966;1967;1968;1969	1967		871			0.040421241536364505
APRPPQDLIGL	11	Unmodified	_APRPPQDLIGL_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3335571289062	2	588.840405	1175.66626	0.22505	0.00013252	1.7189	0.0010122	1.9439	0.0011447	588.841044978188	57.572	0.54575	57.555	57.17	57.716	-0.0172					25	19	2	0	0	0	0.28782	1	13840	13840		19.626	5.7199	1	307920			1595	3229	881	881	1970	1970					0.08545078805741468
APRPPRLRYL	10	Unmodified	_APRPPRLRYL_					0	0	0		nc|ENSG00000172830|Q8TE77-4|SSH3;nc|ENSG00000172830|Q8TE77-2|SSH3;ENSG00000172830|ENST00000308127|SSH3	nc|ENSG00000172830|Q8TE77-4|SSH3	nc|ENSG00000172830|Q8TE77-4|SSH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.587646484375	3	413.58753	1237.74076	0.081466	3.3693E-05	-0.3113	-0.00012875	-0.22983	-9.5056E-05	413.5872694609267	35.951	0.73165	35.951	35.575	36.307	0					76	26	4	0	0	0	0.11922	2	7233	7233;7279		30.703	16.298	1	1070900			1596	6666	882	882	1971;1972	1971					0.1313988640779371
APRPPRLRYL	10	Unmodified	_APRPPRLRYL_					0	0	0		nc|ENSG00000172830|Q8TE77-4|SSH3;nc|ENSG00000172830|Q8TE77-2|SSH3;ENSG00000172830|ENST00000308127|SSH3	nc|ENSG00000172830|Q8TE77-4|SSH3	nc|ENSG00000172830|Q8TE77-4|SSH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5877685546875	3	413.58753	1237.74076	0.37959	0.00015699	-0.61278	-0.00025344	-0.23319	-9.6443E-05	413.5871237978417	35.834	0.6358	35.916	35.624	36.259	0.082355					73	22	4	0	0	0	0.091471	2	7189	7189;7237		42.312	31.513	1	1153900			1597	6666	882	882	1973;1974	1973					0.1313988640779371
APRPPRLRYL	10	Unmodified	_APRPPRLRYL_					0	0	0		nc|ENSG00000172830|Q8TE77-4|SSH3;nc|ENSG00000172830|Q8TE77-2|SSH3;ENSG00000172830|ENST00000308127|SSH3	nc|ENSG00000172830|Q8TE77-4|SSH3	nc|ENSG00000172830|Q8TE77-4|SSH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5871887207031	3	413.58753	1237.74076	0.31221	0.00012913	-0.70304	-0.00029077	-0.39083	-0.00016164	413.587313483248	35.841	0.65209	35.927	35.568	36.22	0.08625					69	23	4	0	0	0	0.1715	2	7231	7186;7231		30.703	21.159	1	1056800			1598	6666	882	882	1975;1976	1976					0.1313988640779371
APRPPTAAP	9	Unmodified	_APRPPTAAP_					0	0	0		ENSG00000184939|ENST00000563169|ZFP90;ZFP90|p.L50Kfs*45|1|0.07|ENSG00000184939|chr16:68558111-68558112|-/AAATGTT|frameshift_variant;nc|ENSG00000184939|Q8TF47-3|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.24798583984375	2	439.248152	876.481751	-0.085496	-3.7554E-05	-0.28322	-0.0001244	-0.36871	-0.00016196	439.2479024341661	25.78	0.94349	25.78	25.328	26.271	0					80	32	3	0	0	0	0.20626	1	4148	4148		22.736	3.4793	1	877500			1599	7485	883	883	1977	1977					0.03856935445844556
APRPPTAAP	9	Unmodified	_APRPPTAAP_					0	0	0		ENSG00000184939|ENST00000563169|ZFP90;ZFP90|p.L50Kfs*45|1|0.07|ENSG00000184939|chr16:68558111-68558112|-/AAATGTT|frameshift_variant;nc|ENSG00000184939|Q8TF47-3|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.2477722167969	2	439.248152	876.481751	-0.093254	-4.0962E-05	-0.26062	-0.00011448	-0.35388	-0.00015544	439.24788191186263	25.802	1.0528	25.779	25.328	26.381	-0.022236					87	37	3	0	0	0	0.20626	1	4155	4155		22.736	3.4793	1	1037400			1600	7485	883	883	1978	1978					0.03856935445844556
APRPTATQL	9	Unmodified	_APRPTATQL_					0	0	0		ENSG00000177542|ENST00000628067|SLC25A22	ENSG00000177542|ENST00000628067|SLC25A22	ENSG00000177542|ENST00000628067|SLC25A22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7720947265625	2	477.771991	953.529429	-0.044253	-2.1143E-05	0.049278	2.3544E-05	0.0050248	2.4007E-06	477.77208119300514	27.523	0.4373	27.523	27.294	27.732	0					25	14	2	0	0	0	0.086462	1	4684	4684		40.239	4.1122	1	216170			1601	6996	884	884	1979	1979					0.05080589646047429
APRPTATQL	9	Unmodified	_APRPTATQL_					0	0	0		ENSG00000177542|ENST00000628067|SLC25A22	ENSG00000177542|ENST00000628067|SLC25A22	ENSG00000177542|ENST00000628067|SLC25A22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7721862792969	2	477.771991	953.529429	-0.0011097	-5.302E-07	0.18562	8.8684E-05	0.18451	8.8153E-05	477.7719795712635	27.499	0.48642	27.488	27.266	27.752	-0.01156					30	16	3	0	0	0	0.1645	1	4670	4670		40.239	4.1122	1	244680			1602	6996	884	884	1980	1980					0.05080589646047429
APRPTATQL	9	Unmodified	_APRPTATQL_					0	0	0		ENSG00000177542|ENST00000628067|SLC25A22	ENSG00000177542|ENST00000628067|SLC25A22	ENSG00000177542|ENST00000628067|SLC25A22	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	477.771991	953.529429	-0.0035953	-1.7177E-06	0.38978	0.00018622	0.38618	0.00018451	477.7722328656367	27.485	0.45166	27.463	27.242	27.693	-0.021412	-0.028111	0.00017286	NaN	40.239	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224920			1603	6996	884	884							0.05080589646047429
APRPTIINA	9	Unmodified	_APRPTIINA_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;ENST00000489593.1_1_9:134321978-134323403:+|nuORF	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7735900878906	2	476.782359	951.550165	-0.50582	-0.00024117	0.53542	0.00025528	0.029595	1.411E-05	476.78252187407276	34.346	0.30486	34.413	34.29	34.595	0.06636					15	10	2	0	0	0	0.22674	1	6750	6750		17.113	0	1	63436			1604	13007	885	885	1981	1981					0.07245180025711306
APRQPGLMA	9	Oxidation (M)	_APRQPGLM(Oxidation (M))A_		APRQPGLM(1)A		APRQPGLM(100)A	0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7532653808594	2	478.752744	955.490935	0.14511	6.9472E-05	0.0079291	3.7961E-06	0.15304	7.3268E-05	478.7530280820458	24.807	1.3177	24.807	24.423	25.741	0					109	44	3	0	0	0	0.00268	4	3868	3827;3868;3913;3965		104.8	39.564	1	7654700			1605	2060	886	886	1982;1983;1984;1985	1983		254			0.011409607398832122
APRQPGLMA	9	Oxidation (M)	_APRQPGLM(Oxidation (M))A_		APRQPGLM(1)A		APRQPGLM(100)A	0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7529296875	2	478.752744	955.490935	0.14982	7.1725E-05	0.035003	1.6758E-05	0.18482	8.8482E-05	478.75302321812336	24.852	1.1909	24.796	24.486	25.677	-0.055931					99	41	3	0	0	0	0.0032391	4	3851	3851;3896;3937;3988		100.37	32.727	1	8655900			1606	2060	886	886	1986;1987;1988;1989	1986		254			0.011409607398832122
APRQPGLMA	9	Oxidation (M)	_APRQPGLM(Oxidation (M))A_		APRQPGLM(1)A		APRQPGLM(110)A	0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7529602050781	2	478.752744	955.490935	-0.042317	-2.0259E-05	0.29069	0.00013917	0.24838	0.00011891	478.7531550947699	24.786	1.3089	24.755	24.456	25.764	-0.031408					110	45	3	0	0	0	0.0017972	4	3837	3837;3884;3930;3981		112.59	40.671	1	8233900			1607	2060	886	886	1990;1991;1992;1993	1990		254			0.011409607398832122
APRQPGLMAQM	11	2 Oxidation (M)	_APRQPGLM(Oxidation (M))AQM(Oxidation (M))_		APRQPGLM(1)AQM(1)		APRQPGLM(190)AQM(190)	0	0	2		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.2998657226562	2	616.299733	1230.58491	0.11444	7.0532E-05	-0.43564	-0.00026848	-0.32119	-0.00019795	616.2998121473314	25.265	0.8929	25.265	24.93	25.823	0					114	30	5	0	0	0	4.2329E-18	4	3989	3945;3989;4034;4078		187.3	147.35	1	3835900			1608	2060	887	887	1994;1995;1996;1997	1995		254;255			-0.021156882201466942
APRQPGLMAQM	11	2 Oxidation (M)	_APRQPGLM(Oxidation (M))AQM(Oxidation (M))_		APRQPGLM(1)AQM(1)		APRQPGLM(170)AQM(170)	0	0	2		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.2998657226562	2	616.299733	1230.58491	-0.06819	-4.2025E-05	-0.26298	-0.00016208	-0.33117	-0.0002041	616.299897208402	25.302	1.0221	25.247	24.918	25.94	-0.055931					115	35	5	0	0	0	4.6839E-13	3	4020	3977;4020;4065		173.69	127.99	1	4076000			1609	2060	887	887	1998;1999;2000	1999		254;255			-0.021156882201466942
APRQPGLMAQM	11	2 Oxidation (M)	_APRQPGLM(Oxidation (M))AQM(Oxidation (M))_		APRQPGLM(1)AQM(1)		APRQPGLM(170)AQM(170)	0	0	2		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.2999267578125	2	616.299733	1230.58491	-0.18145	-0.00011183	-0.24739	-0.00015246	-0.42884	-0.0002643	616.2999539351362	25.341	1.1118	25.309	24.922	26.033	-0.031408					130	39	5	0	0	0	4.6839E-13	3	4056	3964;4013;4056		173.69	140.9	1	4053000			1610	2060	887	887	2001;2002;2003	2003		254;255			-0.021156882201466942
APRQRQSTL	9	Unmodified	_APRQRQSTL_					0	0	0		MMP9|p.T474Lfs*36|1|0.38|ENSG00000100985|chr20:46013338-46013338|C/-|frameshift_variant;ENSG00000100985|ENST00000372330|MMP9	MMP9|p.T474Lfs*36|1|0.38|ENSG00000100985|chr20:46013338-46013338|C/-|frameshift_variant	MMP9|p.T474Lfs*36|1|0.38|ENSG00000100985|chr20:46013338-46013338|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7992553710938	2	528.799072	1055.58359	0.17529	9.2694E-05	-4.0004	-0.0021154	-3.8251	-0.0020227	529.2981597626474	13.59	0.76859	13.59	13.396	14.164	0					68	26	4	0	0	0	0.26612	1	505	505		13.906	2.2658	1	661130			1611	1652	888	888	2004	2004					0.05802181797616868
APRQRQSTL	9	Unmodified	_APRQRQSTL_					0	0	0		MMP9|p.T474Lfs*36|1|0.38|ENSG00000100985|chr20:46013338-46013338|C/-|frameshift_variant;ENSG00000100985|ENST00000372330|MMP9	MMP9|p.T474Lfs*36|1|0.38|ENSG00000100985|chr20:46013338-46013338|C/-|frameshift_variant	MMP9|p.T474Lfs*36|1|0.38|ENSG00000100985|chr20:46013338-46013338|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7996215820312	2	528.799072	1055.58359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.766	1	13.661	13.161	14.161	-0.10466								0	0	0	0.21971	1	525	525		16.149	3.1066	1				1612	1652	888	888	2005	2005					0.05802181797616868
APRQRQSTL	9	Unmodified	_APRQRQSTL_					0	0	0		MMP9|p.T474Lfs*36|1|0.38|ENSG00000100985|chr20:46013338-46013338|C/-|frameshift_variant;ENSG00000100985|ENST00000372330|MMP9	MMP9|p.T474Lfs*36|1|0.38|ENSG00000100985|chr20:46013338-46013338|C/-|frameshift_variant	MMP9|p.T474Lfs*36|1|0.38|ENSG00000100985|chr20:46013338-46013338|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7991943359375	2	528.799072	1055.58359	0.12268	6.4873E-05	-3.4617	-0.0018306	-3.339	-0.0017657	528.7992133471954	13.703	0.76273	13.637	13.389	14.152	-0.066068					84	26	5	0	0	0	0.12642	1	528	528		34.402	2.2848	1	303510			1613	1652	888	888	2006	2006					0.05802181797616868
APRRGAQL	8	Unmodified	_APRRGAQL_					0	0	0		ENST00000380151.3_1_9:21971004-21974448:-|nuORF;nc|ENSG00000147889|Q8N726-2|CDKN2A;ENST00000497750.1_2_9:21971004-21971391:-|nuORF;ENST00000578845.2_2_9:21971004-21971304:-|nuORF;nc|ENSG00000147889|Q8N726|CDKN2A	ENST00000380151.3_1_9:21971004-21974448:-|nuORF	ENST00000380151.3_1_9:21971004-21974448:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7591857910156	2	434.759218	867.503883	-0.41165	-0.00017897	0.21615	9.3972E-05	-0.19551	-8.4999E-05	434.7593216046277	14.012	0.71402	14.012	13.847	14.561	0					67	24	4	0	0	0	0.026049	1	597	597		93.883	53.435	1	1327900			1614	9981	889	889	2007	2007					0.06483159914284897
APRRGAQL	8	Unmodified	_APRRGAQL_					0	0	0		ENST00000380151.3_1_9:21971004-21974448:-|nuORF;nc|ENSG00000147889|Q8N726-2|CDKN2A;ENST00000497750.1_2_9:21971004-21971391:-|nuORF;ENST00000578845.2_2_9:21971004-21971304:-|nuORF;nc|ENSG00000147889|Q8N726|CDKN2A	ENST00000380151.3_1_9:21971004-21974448:-|nuORF	ENST00000380151.3_1_9:21971004-21974448:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7591247558594	2	434.759218	867.503883	-0.35612	-0.00015482	0.14699	6.3905E-05	-0.20912	-9.0919E-05	434.7593078283015	14.107	0.75096	14.002	13.79	14.54	-0.10466					71	25	4	0	0	0	0.13961	1	620	620		53.576	17.531	1	1183100			1615	9981	889	889	2008	2008					0.06483159914284897
APRRGAQL	8	Unmodified	_APRRGAQL_					0	0	0		ENST00000380151.3_1_9:21971004-21974448:-|nuORF;nc|ENSG00000147889|Q8N726-2|CDKN2A;ENST00000497750.1_2_9:21971004-21971391:-|nuORF;ENST00000578845.2_2_9:21971004-21971304:-|nuORF;nc|ENSG00000147889|Q8N726|CDKN2A	ENST00000380151.3_1_9:21971004-21974448:-|nuORF	ENST00000380151.3_1_9:21971004-21974448:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7591552734375	2	434.759218	867.503883	-0.41768	-0.00018159	0.20262	8.8092E-05	-0.21506	-9.3498E-05	434.7593220605102	14.063	0.78543	13.997	13.831	14.616	-0.066067					87	27	4	0	0	0	0.058048	1	602	602		74.396	24.727	1	1299200			1616	9981	889	889	2009	2009					0.06483159914284897
APRRGPALL	9	Unmodified	_APRRGPALL_					0	0	0		ENSG00000225830|ENST00000355832|ERCC6;nc|ENSG00000225830|P0DP91|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.7981872558594	2	475.798343	949.582134	-0.0016108	-7.6643E-07	-0.07785	-3.7041E-05	-0.079461	-3.7807E-05	475.7982003658141	26.19	0.62829	26.19	25.9	26.528	0					50	21	3	0	0	0	0.20344	1	4286	4286		23.148	3.7094	1	306940			1617	8449	890	890	2010	2010					0.10532592499521343
APRRGPALL	9	Unmodified	_APRRGPALL_					0	0	0		ENSG00000225830|ENST00000355832|ERCC6;nc|ENSG00000225830|P0DP91|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7982177734375	2	475.798343	949.582134	0.089687	4.2673E-05	-0.18095	-8.6094E-05	-0.091259	-4.3421E-05	475.79815149928953	26.183	0.73299	26.144	25.931	26.664	-0.038671					52	25	3	0	0	0	0.055495	1	4258	4258		50.855	18.738	1	383420			1618	8449	890	890	2011	2011					0.10532592499521343
APRRGPALL	9	Unmodified	_APRRGPALL_					0	0	0		ENSG00000225830|ENST00000355832|ERCC6;nc|ENSG00000225830|P0DP91|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7981872558594	2	475.798343	949.582134	0.26005	0.00012373	-1.219	-0.00057999	-0.95893	-0.00045626	475.7980710464559	26.23	0.61489	26.208	25.97	26.584	-0.022236					78	21	5	0	0	0	0.14076	1	4304	4304		32.305	12.866	1	394910			1619	8449	890	890	2012	2012					0.10532592499521343
APRRRRQWL	9	Unmodified	_APRRRRQWL_					0	0	0			REV__ENST00000515594.5_1_6:64345874-64401682:+|nuORF	REV__ENST00000515594.5_1_6:64345874-64401682:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.37255859375	2	619.870697	1237.72684	0.12236	7.5846E-05	-1.4295	-0.0008861	-1.3071	-0.00081026	619.8691099845951	93.934	1.0034	93.934	93.572	94.575	0					131	82	2	0	0	0	0.35563	1	25049	25049		0.52476	0.066424	1	117470	+		1620	21845	891	891	2013	2013					0.11748653699351053
APRRRRQWL	9	Unmodified	_APRRRRQWL_					0	0	0			REV__ENST00000515594.5_1_6:64345874-64401682:+|nuORF	REV__ENST00000515594.5_1_6:64345874-64401682:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8690185546875	2	619.870697	1237.72684	-0.018719	-1.1603E-05	-1.0183	-0.00063119	-1.037	-0.00064279	619.8691569591535	96.085	0.7596	96.163	95.962	96.722	0.077415					109	72	2	0	0	0	0.35563	1	25832	25832		0.52476	0.066424	1	188500	+		1621	21845	891	891	2014	2014					0.11748653699351053
APRRRRRPRR	10	Unmodified	_APRRRRRPRR_					0	0	0			REV__ENST00000373045.10_1_1:38259693-38260377:+|nuORF	REV__ENST00000373045.10_1_1:38259693-38260377:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.6276550292969	3	459.627604	1375.86098	0.011901	5.4699E-06	0.047596	2.1876E-05	0.059496	2.7346E-05	459.62756154866565	94.685	0.79689	94.768	94.485	95.282	0.082779					128	70	2	0	0	0	0.41805	1	25271	25271		0.15932	0.15932	1	530850	+		1622	20426	892	892	2015	2015					0.1880873224477
APRRRRRPRR	10	Unmodified	_APRRRRRPRR_					0	0	0			REV__ENST00000373045.10_1_1:38259693-38260377:+|nuORF	REV__ENST00000373045.10_1_1:38259693-38260377:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	459.627604	1375.86098	-0.11713	-5.3837E-05	0.14455	6.644E-05	0.027419	1.2602E-05	459.6276129392876	94.81	0.65551	94.81	94.534	95.19	0	0.021386	8.6432E-05	NaN	0.15932	94	58	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203370	+		1623	20426	892	892							0.1880873224477
APRRSGHTF	9	Unmodified	_APRRSGHTF_					0	0	0		nc|ENSG00000146112|Q6NYC8-4|PPP1R18;nc|ENSG00000146112|Q6NYC8-3|PPP1R18;ENSG00000146112|ENST00000274853|PPP1R18	nc|ENSG00000146112|Q6NYC8-4|PPP1R18	nc|ENSG00000146112|Q6NYC8-4|PPP1R18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7727661132812	2	514.772857	1027.53116	-0.01295	-6.6664E-06	0.27466	0.00014138	0.2617	0.00013472	514.7726985059046	13.29	0.55713	13.29	12.9	13.457	0					44	19	4	0	0	0	0.16685	1	375	375		28.495	14.588	1	288400			1624	4692	893	893	2016	2016					0.018496434546477758
APRRSGHTF	9	Unmodified	_APRRSGHTF_					0	0	0		nc|ENSG00000146112|Q6NYC8-4|PPP1R18;nc|ENSG00000146112|Q6NYC8-3|PPP1R18;ENSG00000146112|ENST00000274853|PPP1R18	nc|ENSG00000146112|Q6NYC8-4|PPP1R18	nc|ENSG00000146112|Q6NYC8-4|PPP1R18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7728881835938	2	514.772857	1027.53116	-0.10452	-5.3802E-05	0.17332	8.9223E-05	0.068808	3.542E-05	514.7727568946298	13.364	0.39877	13.265	13.042	13.441	-0.099291					39	13	4	0	0	0	0.22215	1	406	406		20.415	6.5085	1	341280			1625	4692	893	893	2017	2017					0.018496434546477758
APRRSGHTF	9	Unmodified	_APRRSGHTF_					0	0	0		nc|ENSG00000146112|Q6NYC8-4|PPP1R18;nc|ENSG00000146112|Q6NYC8-3|PPP1R18;ENSG00000146112|ENST00000274853|PPP1R18	nc|ENSG00000146112|Q6NYC8-4|PPP1R18	nc|ENSG00000146112|Q6NYC8-4|PPP1R18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7728271484375	2	514.772857	1027.53116	-0.19315	-9.9427E-05	0.16512	8.4998E-05	-0.028031	-1.443E-05	514.7728052679347	13.355	0.39414	13.287	13.073	13.468	-0.067496					31	13	3	0	0	0	0.23007	1	402	402		19.257	7.0163	1	321140			1626	4692	893	893	2018	2018					0.018496434546477758
APRRSGLS	8	Unmodified	_APRRSGLS_					0	0	0			REV__ENST00000551964.5_2_12:99039092-99039173:+|nuORF	REV__ENST00000551964.5_2_12:99039092-99039173:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2432556152344	2	422.243401	842.472249	-0.36082	-0.00015236	0.29475	0.00012446	-0.066073	-2.7899E-05	422.24350453645803	13.355	0.52405	13.287	13.162	13.686	-0.067496					37	18	3	0	0	0	0.45431	1	404	404		4.3292	0.73274	1	186410	+		1627	22213	894	894	2019	2019					0.044711671603295144
APRSAKPAL	9	Unmodified	_APRSAKPAL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.20794677734375	2	455.777077	909.5396	0.089843	4.0948E-05	0.24401	0.00011121	0.33385	0.00015216	455.77711893619494	16.361	0.99762	16.298	15.756	16.754	-0.062534					60	34	2	0	0	0	0.25526	1	1406	1406		7.9102	0	1	131930			1628	3638	895	895	2020	2020					0.08121197371269773
APRSTEESL	9	Unmodified	_APRSTEESL_					0	0	0		nc|ENSG00000164830|Q8N573-2|OXR1;nc|ENSG00000164830|Q8N573-5|OXR1;ENSG00000164830|ENST00000517566|OXR1;nc|ENSG00000164830|Q8N573|OXR1;nc|ENSG00000164830|Q8N573-3|OXR1	nc|ENSG00000164830|Q8N573-2|OXR1	nc|ENSG00000164830|Q8N573-2|OXR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2488098144531	2	495.248546	988.482539	0.71439	0.0003538	-0.7786	-0.0003856	-0.064213	-3.1801E-05	495.2481104032548	20.86	0.56805	20.75	20.495	21.063	-0.11003					33	19	2	0	0	0	0.25527	1	2643	2643		8.7454	2.0222	1	196390			1629	5882	896	896	2021	2021					-0.012163146957504978
APRSVTTKK	9	Unmodified	_APRSVTTKK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;ENST00000538236.1_1_12:123345767-123346160:+|nuORF	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.77276611328125	2	494.300916	986.587279	0.090288	4.4629E-05	-0.92572	-0.00045758	-0.83543	-0.00041295	494.30097806438533	14.317	0.28741	14.317	14.191	14.478	0					18	9	3	0	0	0	0.26145	1	713	713		2.0598	0.21551	1	52787			1630	3515	897	897	2022	2022					0.09344851571461277
APRTFGLTL	9	Unmodified	_APRTFGLTL_					0	0	0		ENSG00000113790|ENST00000231887|EHHADH;ENST00000475987.1_1_3:184944632-184971810:-|nuORF	ENSG00000113790|ENST00000231887|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2847900390625	2	488.284734	974.554916	0.3787	0.00018491	0.68947	0.00033666	1.0682	0.00052157	488.28523473977	55.592	0.82824	55.592	55.221	56.049	0					94	29	5	0	0	0	0.063898	1	13285	13285		47.732	1.711	1	6130300			1631	2531	898	898	2023	2023					0.06662064168460802
APRTFGLTL	9	Unmodified	_APRTFGLTL_					0	0	0		ENSG00000113790|ENST00000231887|EHHADH;ENST00000475987.1_1_3:184944632-184971810:-|nuORF	ENSG00000113790|ENST00000231887|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.285400390625	2	488.284734	974.554916	0.53998	0.00026366	0.79167	0.00038656	1.3317	0.00065022	488.28533630941877	55.52	0.99411	55.591	55.245	56.239	0.070889					100	36	4	0	0	0	0.15763	1	13197	13197		29.841	1.3537	1	6980800			1632	2531	898	898	2024	2024					0.06662064168460802
APRTFGLTL	9	Unmodified	_APRTFGLTL_					0	0	0		ENSG00000113790|ENST00000231887|EHHADH;ENST00000475987.1_1_3:184944632-184971810:-|nuORF	ENSG00000113790|ENST00000231887|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2848205566406	2	488.284734	974.554916	0.52332	0.00025553	0.76512	0.00037359	1.2884	0.00062913	488.28524831199246	55.709	0.83445	55.69	55.379	56.213	-0.019081					94	30	4	0	0	0	0.083138	1	13308	13308		40.725	2.7509	1	6357900			1633	2531	898	898	2025	2025					0.06662064168460802
APRTGLLEL	9	Unmodified	_APRTGLLEL_					0	0	0		ENSG00000101400|ENST00000217381|SNTA1;nc|ENSG00000101400|Q13424-2|SNTA1	ENSG00000101400|ENST00000217381|SNTA1	ENSG00000101400|ENST00000217381|SNTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2904357910156	2	485.290017	968.565481	0.31108	0.00015097	-1.2788	-0.00062058	-0.96769	-0.00046961	485.2892641663093	51.546	0.84561	51.556	51.119	51.964	0.0095673					70	31	4	0	0	0	0.11201	1	12011	12011		36.506	5.2379	1	1749500			1634	1694	899	899	2026	2026					0.07994046822898326
APRTGLLEL	9	Unmodified	_APRTGLLEL_					0	0	0		ENSG00000101400|ENST00000217381|SNTA1;nc|ENSG00000101400|Q13424-2|SNTA1	ENSG00000101400|ENST00000217381|SNTA1	ENSG00000101400|ENST00000217381|SNTA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	485.290017	968.565481	0.33889	0.00016446	-1.1376	-0.00055208	-0.79874	-0.00038762	485.2893825184781	51.487	0.77943	51.487	51.081	51.86	0	-0.019892	-0.00032699	NaN	36.506	58	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1558100			1635	1694	899	899							0.07994046822898326
APRTGLLEL	9	Unmodified	_APRTGLLEL_					0	0	0		ENSG00000101400|ENST00000217381|SNTA1;nc|ENSG00000101400|Q13424-2|SNTA1	ENSG00000101400|ENST00000217381|SNTA1	ENSG00000101400|ENST00000217381|SNTA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	485.290017	968.565481	0.23355	0.00011334	-0.56166	-0.00027257	-0.32811	-0.00015923	485.2898104056374	51.432	0.67319	51.478	51.196	51.87	0.046574	-0.028606	0.00023203	NaN	36.506	61	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1742000			1636	1694	899	899							0.07994046822898326
APRTLLLL	8	Unmodified	_APRTLLLL_					0	0	0		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.79998779296875	2	448.80002	895.585488	0.32654	0.00014655	-0.18646	-8.3684E-05	0.14008	6.2868E-05	448.79981985283166	64.138	0.81823	64.231	63.927	64.746	0.092888					80	29	4	0	0	0	0.32038	1	15984	15984		28.487	0	1	1898400			1637	8321;12917	900	900	2027	2027					0.1335184255351578
APRTPGRHGL	10	Unmodified	_APRTPGRHGL_					0	0	0		nc|ENSG00000139132|Q96M96|FGD4;ENSG00000139132|ENST00000534526|FGD4;nc|ENSG00000139132|Q96M96-3|FGD4;FGD4|p.Q83Lfs*29|1|0.07|ENSG00000139132|chr12:32582114-32582115|-/TTTCTTCAAATCACTATAATTTGAT|frameshift_variant	nc|ENSG00000139132|Q96M96|FGD4	nc|ENSG00000139132|Q96M96|FGD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3017578125	2	531.301781	1060.58901	0.332	0.00017639	0.090975	4.8335E-05	0.42297	0.00022473	531.3018940862524	16.119	0.86852	16.119	15.679	16.548	0					72	30	3	0	0	0	0.38515	1	1262	1262		6.2058	0.47393	1	118230			1638	4207	901	901	2028	2028					0.06113905380084361
APRTPGRHGL	10	Unmodified	_APRTPGRHGL_					0	0	0		nc|ENSG00000139132|Q96M96|FGD4;ENSG00000139132|ENST00000534526|FGD4;nc|ENSG00000139132|Q96M96-3|FGD4;FGD4|p.Q83Lfs*29|1|0.07|ENSG00000139132|chr12:32582114-32582115|-/TTTCTTCAAATCACTATAATTTGAT|frameshift_variant	nc|ENSG00000139132|Q96M96|FGD4	nc|ENSG00000139132|Q96M96|FGD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3017578125	2	531.301781	1060.58901	0.16994	9.0292E-05	0.30323	0.00016111	0.47317	0.0002514	531.302090600193	16.234	0.88596	16.12	15.781	16.667	-0.11434					68	30	4	0	0	0	0.37133	1	1309	1309		8.7454	4.4162	1	91931			1639	4207	901	901	2029	2029					0.06113905380084361
APRTPGRHGL	10	Unmodified	_APRTPGRHGL_					0	0	0		nc|ENSG00000139132|Q96M96|FGD4;ENSG00000139132|ENST00000534526|FGD4;nc|ENSG00000139132|Q96M96-3|FGD4;FGD4|p.Q83Lfs*29|1|0.07|ENSG00000139132|chr12:32582114-32582115|-/TTTCTTCAAATCACTATAATTTGAT|frameshift_variant	nc|ENSG00000139132|Q96M96|FGD4	nc|ENSG00000139132|Q96M96|FGD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.302001953125	2	531.301781	1060.58901	0.35212	0.00018708	-0.15077	-8.0104E-05	0.20135	0.00010698	531.3018475702877	16.108	0.68078	16.045	15.67	16.351	-0.062534					53	23	3	0	0	0	0.35231	1	1267	1267		12.241	6.5088	1	132260			1640	4207	901	901	2030	2030					0.06113905380084361
APRTPPGVTF	10	Unmodified	_APRTPPGVTF_					0	0	0		ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.8373413085938	2	521.787641	1041.56073	0.47929	0.00025009	0.78798	0.00041116	1.2673	0.00066125	521.7881687434136	43.023	0.43617	43.108	42.891	43.327	0.085197					19	15	2	0	0	0	0.30555	1	9433	9433		20.415	20.415	1	158090			1641	8621	902	902	2031	2031					0.04161162680134112
APRTVALTA	9	Unmodified	_APRTVALTA_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.26922607421875	2	450.269084	898.523616	0.29824	0.00013429	-0.58414	-0.00026302	-0.2859	-0.00012873	450.2690698104063	30.115	1.7525	30.115	29.801	31.553	0					184	62	5	0	0	0	0.032589	4	5460	5460;5510;5562;5602		59.368	15.409	1	19497000			1642	8440	903	903	2032;2033;2034;2035	2032					0.07029491134346699
APRTVALTA	9	Unmodified	_APRTVALTA_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.269287109375	2	450.269084	898.523616	0.23357	0.00010517	-0.5303	-0.00023878	-0.29673	-0.00013361	450.26909924879277	30.121	1.7389	30.149	29.79	31.528	0.027946					178	61	5	0	0	0	0.01909	5	5465	5419;5465;5510;5560;5603		65.474	21.701	1	19998000			1643	8440	903	903	2036;2037;2038;2039;2040	2037					0.07029491134346699
APRTVALTA	9	Unmodified	_APRTVALTA_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2692565917969	2	450.269084	898.523616	-0.082515	-3.7154E-05	-0.20212	-9.1008E-05	-0.28464	-0.00012816	450.26926519697935	30.094	1.7094	30.121	29.812	31.521	0.027157					177	60	5	0	0	0	0.022205	4	5455	5411;5455;5505;5549		63.227	17.528	1	21250000			1644	8440	903	903	2041;2042;2043;2044	2042					0.07029491134346699
APRTVALTAL	10	Unmodified	_APRTVALTAL_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8113098144531	2	506.811116	1011.60768	0.61682	0.00031261	-0.11557	-5.8572E-05	0.50125	0.00025404	506.8110994268393	47.213	0.86507	47.213	46.932	47.797	0					89	30	4	0	0	0	0.014191	1	10707	10707		78.06	7.7285	1	14554000			1645	8440	904	904	2045	2045					0.10234022231247764
APRTVALTAL	10	Unmodified	_APRTVALTAL_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.8113708496094	2	506.811116	1011.60768	0.25747	0.00013049	0.14359	7.2773E-05	0.40106	0.00020326	506.81125845862124	47.2	0.9694	47.252	46.929	47.899	0.052574					102	35	4	0	0	0	0.014191	1	10691	10691		78.06	7.7285	1	15996000			1646	8440	904	904	2046	2046					0.10234022231247764
APRTVALTAL	10	Unmodified	_APRTVALTAL_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.8113098144531	2	506.811116	1011.60768	0.94097	0.00047689	-0.44737	-0.00022673	0.49359	0.00025016	506.81092084526654	47.166	0.89609	47.221	46.939	47.835	0.054371					90	32	3	0	0	0	0.014191	1	10684	10684		78.06	7.7285	1	17204000			1647	8440	904	904	2047	2047					0.10234022231247764
APRTVALTALL	11	Unmodified	_APRTVALTALL_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.353515625	2	563.353148	1124.69174	0.51454	0.00028987	-0.28148	-0.00015857	0.23306	0.00013129	563.3530970341061	64.2	2.5937	64.2	63.859	66.453	0					192	94	3	0	0	0	0.0042142	3	15945	15899;15945;15993		81.915	32.388	1	22291000			1648	8440	905	905	2048;2049;2050	2049					0.13438553328160197
APRTVALTALL	11	Unmodified	_APRTVALTALL_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3534545898438	2	563.353148	1124.69174	0.51013	0.00028738	-0.27473	-0.00015477	0.2354	0.00013261	563.3530558992587	64.122	2.6651	64.215	63.536	66.201	0.09288					275	97	5	0	0	0	0.0042142	4	15905	15858;15905;15947;15989		81.915	32.388	1	21802000			1649	8440	905	905	2051;2052;2053;2054	2052					0.13438553328160197
APRTVALTALL	11	Unmodified	_APRTVALTALL_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.353515625	2	563.353148	1124.69174	0.4706	0.00026512	-0.24303	-0.00013691	0.22757	0.0001282	563.3530979777555	64.22	2.6383	64.211	63.851	66.489	-0.0095291					200	96	3	0	0	0	0.0072124	3	15934	15886;15934;15976		75.571	27.131	1	21147000			1650	8440	905	905	2055;2056;2057	2056					0.13438553328160197
APRTVLLLL	9	Unmodified	_APRTVLLLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3345642089844	2	498.334227	994.653902	0.38239	0.00019056	-0.22752	-0.00011338	0.15487	7.7179E-05	498.33444600556777	67.975	1.9443	67.975	67.673	69.618	0					205	70	5	0	0	0	0.017549	2	17075	17075;17117		67.838	3.8776	1	33411000			1651	8488	906	906	2058;2059	2058					0.15636087133384535
APRTVLLLL	9	Unmodified	_APRTVLLLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3343200683594	2	498.334227	994.653902	0.47787	0.00023814	-0.35581	-0.00017731	0.12206	6.0827E-05	498.3344097747866	67.911	3.1023	67.989	67.687	70.789	0.078041					238	111	5	0	0	0	0.011693	2	17027	17027;17072		76.825	3.8568	1	33693000			1652	8488	906	906	2060;2061	2060					0.15636087133384535
APRTVLLLL	9	Unmodified	_APRTVLLLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.3346252441406	2	498.334227	994.653902	0.35811	0.00017846	-0.26457	-0.00013184	0.093538	4.6613E-05	498.33442301344934	67.987	2.4153	67.971	67.672	70.087	-0.016296					236	86	5	0	0	0	0.0079761	2	17077	17077;17126		82.529	10.607	1	33486000			1653	8488	906	906	2062;2063	2062					0.15636087133384535
APRTVLLLLSA	11	Unmodified	_APRTVLLLLSA_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3687744140625	2	577.368798	1152.72304	0.079224	4.5741E-05	0.22524	0.00013005	0.30446	0.00017579	577.3688668588075	69.396	1.7055	69.396	68.9	70.605	0					184	61	5	0	0	0	0.00539	5	17498	17498;17540;17593;17644;17696		79.427	29.9	1	10033000			1654	8488	907	907	2064;2065;2066;2067;2068	2064					0.15279126362293027
APRTVLLLLSA	11	Unmodified	_APRTVLLLLSA_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.368896484375	2	577.368798	1152.72304	0.25764	0.00014875	0.090672	5.2351E-05	0.34831	0.0002011	577.3687735499904	69.342	1.9007	69.408	68.849	70.749	0.066048					189	67	5	0	0	0	0.006514	4	17526	17474;17526;17572;17613		77.049	31.026	1	8876200			1655	8488	907	907	2069;2070;2071;2072	2070					0.15279126362293027
APRTVLLLLSA	11	Unmodified	_APRTVLLLLSA_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3688354492188	2	577.368798	1152.72304	0.15559	8.983E-05	0.24099	0.00013914	0.39657	0.00022897	577.3688122638291	69.435	1.7151	69.413	68.866	70.581	-0.022087					169	61	5	0	0	0	0.00539	3	17502	17502;17552;17601		79.427	26.11	1	8834200			1656	8488	907	907	2073;2074;2075	2073					0.15279126362293027
APRVLQQTL	9	Unmodified	_APRVLQQTL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.3088989257812	2	513.308741	1024.60293	0.50576	0.00025961	-0.3409	-0.00017499	0.16487	8.4628E-05	513.3086043357599	40.58	0.78583	40.58	40.283	41.069	0					82	28	4	0	0	0	0.0016724	1	8657	8657		114.19	55.508	1	1806000			1657	8284	908	908	2076	2076					0.09161138088529697
APRVLQQTL	9	Unmodified	_APRVLQQTL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.308837890625	2	513.308741	1024.60293	0.44457	0.0002282	-0.30015	-0.00015407	0.14442	7.4133E-05	513.3086042602235	40.428	0.85527	40.52	40.176	41.031	0.09267					79	31	4	0	0	0	0.0037449	2	8612	8612;8656		96.367	46.434	1	2029800			1658	8284	908	908	2077;2078	2077					0.09161138088529697
APRVLQQTL	9	Unmodified	_APRVLQQTL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.3088989257812	2	513.308741	1024.60293	0.35847	0.00018401	-0.16152	-8.2908E-05	0.19696	0.0001011	513.3087149647703	40.376	0.65877	40.476	40.201	40.86	0.099403					66	23	4	0	0	0	0.011693	1	8599	8599		76.825	23.421	1	2126500			1659	8284	908	908	2079	2079					0.09161138088529697
APRVPVQAL	9	Unmodified	_APRVPVQAL_					0	0	0		nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17	nc|ENSG00000132466|O75179-3|ANKRD17	nc|ENSG00000132466|O75179-3|ANKRD17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.79254150390625	2	475.792727	949.5709	0.10371	4.9347E-05	0.0056687	2.6971E-06	0.10938	5.2044E-05	475.79264067979045	42.855	0.87154	42.855	42.543	43.414	0					94	31	4	0	0	0	0.012929	3	9330	9330;9375;9424		74.929	28.908	1	5531800			1660	3637	909	909	2080;2081;2082	2080					0.09409770405375184
APRVPVQAL	9	Unmodified	_APRVPVQAL_					0	0	0		nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17	nc|ENSG00000132466|O75179-3|ANKRD17	nc|ENSG00000132466|O75179-3|ANKRD17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7926025390625	2	475.792727	949.5709	0.15087	7.1782E-05	0.00747	3.5542E-06	0.15834	7.5336E-05	475.7926686247354	42.743	1.0085	42.828	42.514	43.522	0.085197					96	36	4	0	0	0	0.0083926	2	9292	9292;9342		81.89	28.908	1	6113300			1661	3637	909	909	2083;2084	2083					0.09409770405375184
APRVPVQAL	9	Unmodified	_APRVPVQAL_					0	0	0		nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17	nc|ENSG00000132466|O75179-3|ANKRD17	nc|ENSG00000132466|O75179-3|ANKRD17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.792724609375	2	475.792727	949.5709	0.047198	2.2457E-05	0.11677	5.5556E-05	0.16396	7.8013E-05	475.7927228498087	42.718	0.92143	42.809	42.47	43.391	0.091362					96	33	4	0	0	0	0.004681	2	9312	9267;9312		88.954	34.18	1	5725000			1662	3637	909	909	2085;2086	2086					0.09409770405375184
APRVPYQF	8	Unmodified	_APRVPYQF_					0	0	0			REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2640686035156	2	489.263802	976.513051	0.37799	0.00018494	-0.19237	-9.4119E-05	0.18562	9.0818E-05	489.26386784368503	52.751	1.6469	52.751	52.267	53.914	0					183	60	5	0	0	0	0.25425	2	12383	12383;12427		36.044	6.9626	1	24440000	+		1663	13608	910	910	2087;2088	2087					0.023855084799379256
APRVPYQF	8	Unmodified	_APRVPYQF_					0	0	0			REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.263916015625	2	489.263802	976.513051	0.31309	0.00015318	-0.026242	-1.2839E-05	0.28685	0.00014034	489.2639170266812	52.862	1.8545	52.861	52.245	54.1	-0.001236					209	68	6	0	0	0	0.25425	2	12409	12409;12459		36.044	7.5574	1	22454000	+		1664	13608	910	910	2089;2090	2089					0.023855084799379256
APRWPRNNYFP	11	Unmodified	_APRWPRNNYFP_					0	0	0			REV__ENSG00000196878|ENST00000356082|LAMB3	REV__ENSG00000196878|ENST00000356082|LAMB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.75604248046875	3	473.242311	1416.7051	0.2403	0.00011372	1.6438	0.00077793	1.8841	0.00089165	473.57744665784423	30.636	0.48523	30.664	30.324	30.81	0.027946					25	16	2	0	0	0	0.33202	1	5646	5646		1.3296	0	1	121080	+		1665	18692	911	911	2091	2091					0.013418041601198638
APRWVLSQVQL	11	Unmodified	_APRWVLSQVQL_					0	0	0		nc|ENSG00000211952|A0A0C4DH34|IGHV4-28;nc|ENSG00000231475|P0DP07|IGHV4-31;ENST00000520889.1_1_14:107062319-107062537:-|nuORF;nc|ENSG00000224373|P01825|IGHV4-59;nc|ENSG00000276775|A0A075B6R2|IGHV4-4;nc|ENSG00000211970|A0A0C4DH41|IGHV4-61;nc|ENSG00000211956|P06331|IGHV4-34	nc|ENSG00000211952|A0A0C4DH34|IGHV4-28	nc|ENSG00000211952|A0A0C4DH34|IGHV4-28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	648.3804931640625	2	648.874779	1295.73501	0.29054	0.00018853	-0.078192	-5.0737E-05	0.21235	0.00013779	648.8747265453576	67.073	0.28568	67.151	67.04	67.326	0.078041					16	9	2	0	0	0	0.32061	1	16818	16818		21.799	5.2336	1	119980			1666	12937	912	912	2092	2092					0.09896743105468886
APRWVLSQVQL	11	Unmodified	_APRWVLSQVQL_					0	0	0		nc|ENSG00000211952|A0A0C4DH34|IGHV4-28;nc|ENSG00000231475|P0DP07|IGHV4-31;ENST00000520889.1_1_14:107062319-107062537:-|nuORF;nc|ENSG00000224373|P01825|IGHV4-59;nc|ENSG00000276775|A0A075B6R2|IGHV4-4;nc|ENSG00000211970|A0A0C4DH41|IGHV4-61;nc|ENSG00000211956|P06331|IGHV4-34	nc|ENSG00000211952|A0A0C4DH34|IGHV4-28	nc|ENSG00000211952|A0A0C4DH34|IGHV4-28	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	648.874779	1295.73501	0.4245	0.00027544	-0.001971	-1.2789E-06	0.42252	0.00027417	648.8745138195773	67.268	0.35036	67.268	67.048	67.398	0	0.058871	4.3804E-05	NaN	21.799	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156470			1667	12937	912	912							0.09896743105468886
APSAAKLLVQL	11	Unmodified	_APSAAKLLVQL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8137817382812	2	555.847699	1109.68084	0.42508	0.00023628	0.56309	0.00031299	0.98817	0.00054927	555.8480687441396	61.012	0.38802	61.012	60.792	61.18	0					22	13	2	0	0	0	0.30331	1	15003	15003		21.799	12.416	1	927090			1668	1848	913	913	2093	2093					0.13039150953886747
APSAAKLLVQL	11	Unmodified	_APSAAKLLVQL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.81396484375	2	555.847699	1109.68084	0.42841	0.00023813	0.69462	0.0003861	1.123	0.00062423	555.8479565830894	60.909	0.44377	61.006	60.726	61.169	0.096989					23	15	2	0	0	0	0.097673	1	14932	14932		68.76	48.345	1	1148100			1669	1848	913	913	2094	2094					0.13039150953886747
APSAAKLLVQL	11	Unmodified	_APSAAKLLVQL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.81396484375	2	555.847699	1109.68084	0.42912	0.00023853	0.96001	0.00053362	1.3891	0.00077215	555.8483174556413	60.973	0.37317	60.964	60.759	61.133	-0.0094566					20	13	2	0	0	0	0.29379	1	14976	14976		30.431	21.048	1	1300200			1670	1848	913	913	2095	2095					0.13039150953886747
APSATSAAAAL	11	Unmodified	_APSATSAAAAL_					0	0	0		ENST00000481880.5_1_7:105428891-105517004:-|nuORF	ENST00000481880.5_1_7:105428891-105517004:-|nuORF	ENST00000481880.5_1_7:105428891-105517004:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.749267578125	2	465.748182	929.481811	0.1417	6.5997E-05	0.26031	0.00012124	0.40201	0.00018723	465.74816779860015	21.684	0.73137	21.584	21.073	21.804	-0.10034					67	25	4	0	0	0	0.22366	1	2854	2854		29.082	4.0906	1	332510			1671	11036	914	914	2096	2096					0.014248906551642904
APSCQKCI	8	Unmodified	_APSCQKCI_					0	0	0		nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7;ENST00000549462.1_1_12:53591166-53600997:-|nuORF	nc|ENSG00000139626|P26010-2|ITGB7	nc|ENSG00000139626|P26010-2|ITGB7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8872985839844	2	425.201499	848.388444	0.1494	6.3524E-05	0.20007	8.5069E-05	0.34947	0.00014859	425.2015444896956	29.216	0.79494	29.216	29.006	29.801	0					43	28	2	0	0	0	0.34147	1	5340	5340		6.3541	6.3541	1	222230			1672	4250	915	915	2097	2097					-0.04181448323254244
APSDLRTIQTF	11	Unmodified	_APSDLRTIQTF_					0	0	0		nc|ENSG00000040633|Q9BUL5-2|PHF23;nc|ENSG00000040633|Q9BUL5-4|PHF23;ENSG00000040633|ENST00000320316|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.8326416015625	2	624.832777	1247.651	0.57984	0.0003623	-0.12044	-7.5256E-05	0.4594	0.00028705	624.8325755017139	51.111	0.63844	51.111	50.818	51.456	0					57	23	3	0	0	0	0.0034866	2	11894	11894;11948		106.37	71.963	1	907400			1673	603	916	916	2098;2099	2098					0.03708167217882874
APSDLRTIQTF	11	Unmodified	_APSDLRTIQTF_					0	0	0		nc|ENSG00000040633|Q9BUL5-2|PHF23;nc|ENSG00000040633|Q9BUL5-4|PHF23;ENSG00000040633|ENST00000320316|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.8321533203125	2	624.832777	1247.651	0.15676	9.795E-05	0.2633	0.00016452	0.42006	0.00026247	624.8328966021334	51.142	0.63148	51.188	50.848	51.479	0.046577					60	23	3	0	0	0	0.0034866	2	11937	11889;11937		106.37	82.564	1	1023900			1674	603	916	916	2100;2101	2101					0.03708167217882874
APSDLRTIQTF	11	Unmodified	_APSDLRTIQTF_					0	0	0		nc|ENSG00000040633|Q9BUL5-2|PHF23;nc|ENSG00000040633|Q9BUL5-4|PHF23;ENSG00000040633|ENST00000320316|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.833251953125	2	624.832777	1247.651	0.34787	0.00021736	0.23963	0.00014973	0.5875	0.00036709	624.8328351938685	51.143	0.6189	51.153	50.887	51.506	0.0095634					58	23	3	0	0	0	0.0070159	2	11902	11902;11949		97.284	58.669	1	1064600			1675	603	916	916	2102;2103	2102					0.03708167217882874
APSDNRVTSF	10	Unmodified	_APSDNRVTSF_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C;ENST00000487086.1_1_20:1438843-1447469:-|nuORF	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.2675170898438	2	547.26727	1092.51999	0.64642	0.00035376	0.050863	2.7836E-05	0.69728	0.0003816	547.267281464473	32.172	0.70959	32.172	31.953	32.662	0					61	25	3	0	0	0	0.011039	1	6093	6093		108.26	39.502	1	1034200			1676	1333	917	917	2104	2104					-0.022572234301378558
APSDNRVTSF	10	Unmodified	_APSDNRVTSF_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C;ENST00000487086.1_1_20:1438843-1447469:-|nuORF	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.2676391601562	2	547.26727	1092.51999	0.83317	0.00045596	0.0010974	6.0057E-07	0.83426	0.00045657	547.2672534389606	32.113	0.66411	32.155	31.941	32.605	0.042366					53	23	3	0	0	0	0.00018584	1	6115	6115		108.26	51.154	1	1109500			1677	1333	917	917	2105	2105					-0.022572234301378558
APSDNRVTSF	10	Unmodified	_APSDNRVTSF_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C;ENST00000487086.1_1_20:1438843-1447469:-|nuORF	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.2674560546875	2	547.26727	1092.51999	0.56598	0.00030974	0.13575	7.4289E-05	0.70172	0.00038403	547.267304321806	32.108	0.64938	32.149	31.916	32.565	0.040989					55	22	3	0	0	0	0.0033041	1	6068	6068		101.54	53.949	1	821280			1678	1333	917	917	2106	2106					-0.022572234301378558
APSDRPLQL	9	Unmodified	_APSDRPLQL_					0	0	0		ENSG00000164902|ENST00000297540|PHAX;ENST00000514725.1_1_5:125936627-125939268:+|nuORF;PHAX|p.S66Tfs*112|1|0.05|ENSG00000164902|chr5:126603669-126603670|-/CTTTGCCATTCCAAAAT|frameshift_variant	ENSG00000164902|ENST00000297540|PHAX	ENSG00000164902|ENST00000297540|PHAX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.3057861328125	2	498.777274	995.539994	0.49746	0.00024812	-0.70763	-0.00035295	-0.21017	-0.00010483	498.77677807353007	38.986	0.36891	39.085	38.923	39.292	0.099407					15	12	2	0	0	0	0.2422	1	8178	8178		19.362	5.4559	1	237280			1679	5895	918	918	2107	2107					0.04204572300466225
APSEYRYTLL	10	Unmodified	_APSEYRYTLL_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8165893554688	2	606.816596	1211.61864	0.52635	0.0003194	0.29485	0.00017892	0.8212	0.00049832	606.8168467786244	53.028	0.89053	53.028	52.523	53.414	0					80	32	4	0	0	0	0.0037867	2	12531	12481;12531		98.73	61.655	1	2764700			1680	522	919	919	2108;2109	2109					0.02129379814891763
APSEYRYTLL	10	Unmodified	_APSEYRYTLL_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.81689453125	2	606.816596	1211.61864	0.75617	0.00045886	-0.1043	-6.3289E-05	0.65188	0.00039557	606.8164217942995	52.971	0.76236	53.027	52.772	53.535	0.056259					77	27	4	0	0	0	0.0053513	3	12455	12455;12511;12560		89.609	52.574	1	2523200			1681	522	919	919	2110;2111;2112	2110					0.02129379814891763
APSEYRYTLL	10	Unmodified	_APSEYRYTLL_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8169555664062	2	606.816596	1211.61864	0.39447	0.00023937	0.069978	4.2464E-05	0.46445	0.00028183	606.8166330922593	53.223	0.696	53.214	52.889	53.585	-0.0096054					65	25	3	0	0	0	0.0021517	2	12518	12518;12574		108.26	71.187	1	2671400			1682	522	919	919	2113;2114	2113					0.02129379814891763
APSGLRSQVQF	11	Unmodified	_APSGLRSQVQF_					0	0	0		nc|ENSG00000155324|Q96HH9-5|GRAMD2B;nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-2|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B	nc|ENSG00000155324|Q96HH9-5|GRAMD2B	nc|ENSG00000155324|Q96HH9-5|GRAMD2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.7960205078125	2	595.319837	1188.62512	0.63905	0.00038044	-0.23593	-0.00014045	0.40312	0.00023998	595.319746906951	43.121	0.45996	43.199	43.023	43.483	0.077515					36	16	3	0	0	0	0.23423	1	9465	9465		48.561	23.679	1	529140			1683	5170	920	920	2115	2115					0.03835317766265689
APSGLRSQVQF	11	Unmodified	_APSGLRSQVQF_					0	0	0		nc|ENSG00000155324|Q96HH9-5|GRAMD2B;nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-2|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B	nc|ENSG00000155324|Q96HH9-5|GRAMD2B	nc|ENSG00000155324|Q96HH9-5|GRAMD2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.7958374023438	2	595.319837	1188.62512	0.32756	0.000195	0.11235	6.6882E-05	0.43991	0.00026189	595.3198968409139	43.108	0.5143	43.192	42.978	43.492	0.083996					38	18	3	0	0	0	0.27861	1	9399	9399		35.08	11.29	1	600370			1684	5170	920	920	2116	2116					0.03835317766265689
APSGLRSQVQF	11	Unmodified	_APSGLRSQVQF_					0	0	0		nc|ENSG00000155324|Q96HH9-5|GRAMD2B;nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-2|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B	nc|ENSG00000155324|Q96HH9-5|GRAMD2B	nc|ENSG00000155324|Q96HH9-5|GRAMD2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	595.319837	1188.62512	0.44539	0.00026515	-0.48861	-0.00029088	-0.04322	-2.573E-05	595.319799619385	43.41	0.62473	43.41	43.116	43.741	0	0.14286	-0.00039238	NaN	55.467	52	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	582620			1685	5170	920	920							0.03835317766265689
APSGRLSNP	9	Unmodified	_APSGRLSNP_					0	0	0		ENSG00000108375|ENST00000407977|RNF43;nc|ENSG00000108375|Q68DV7-4|RNF43;nc|ENSG00000108375|Q68DV7-3|RNF43;nc|ENSG00000108375|Q68DV7-2|RNF43	ENSG00000108375|ENST00000407977|RNF43	ENSG00000108375|ENST00000407977|RNF43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7402648925781	2	449.740691	897.466829	0.17361	7.808E-05	-0.4286	-0.00019276	-0.25499	-0.00011468	449.7403415347496	16.974	0.75777	16.974	16.749	17.507	0					37	26	2	0	0	0	0.11461	1	1480	1480		36.127	1.7253	1	175790			1686	2178	921	921	2117	2117					0.013994435778386105
APSGRLSNP	9	Unmodified	_APSGRLSNP_					0	0	0		ENSG00000108375|ENST00000407977|RNF43;nc|ENSG00000108375|Q68DV7-4|RNF43;nc|ENSG00000108375|Q68DV7-3|RNF43;nc|ENSG00000108375|Q68DV7-2|RNF43	ENSG00000108375|ENST00000407977|RNF43	ENSG00000108375|ENST00000407977|RNF43	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	449.740691	897.466829	0.2885	0.00012975	-0.54547	-0.00024532	-0.25696	-0.00011557	449.7403044851642	17.036	0.86202	16.975	16.756	17.618	-0.060429	-0.028655	-5.4737E-05	NaN	36.127	42	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192560			1687	2178	921	921							0.013994435778386105
APSGTRVVQV	10	Unmodified	_APSGTRVVQV_					0	0	0		ENSG00000240184|ENST00000308177|PCDHGC3;nc|ENSG00000240184|Q9UN70-2|PCDHGC3	ENSG00000240184|ENST00000308177|PCDHGC3	ENSG00000240184|ENST00000308177|PCDHGC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.29034423828125	2	507.290548	1012.56654	0.020183	1.0239E-05	-0.46707	-0.00023694	-0.44689	-0.0002267	507.2905189441808	29.95	0.73076	29.963	29.564	30.295	0.013474					47	24	3	0	0	0	0.20826	1	5443	5443		31.636	16.387	1	167690			1688	8518	922	922	2118	2118					0.06076261191810772
APSGTRVVQV	10	Unmodified	_APSGTRVVQV_					0	0	0		ENSG00000240184|ENST00000308177|PCDHGC3;nc|ENSG00000240184|Q9UN70-2|PCDHGC3	ENSG00000240184|ENST00000308177|PCDHGC3	ENSG00000240184|ENST00000308177|PCDHGC3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.290548	1012.56654	0.4442	0.00022534	-0.48891	-0.00024802	-0.044718	-2.2685E-05	507.2903297289312	30.072	0.81198	30.072	29.521	30.333	0	0.05413	-8.8089E-06	NaN	31.636	43	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137290			1689	8518	922	922							0.06076261191810772
APSGTRVVQVL	11	Unmodified	_APSGTRVVQVL_					0	0	0		ENSG00000240184|ENST00000308177|PCDHGC3;nc|ENSG00000240184|Q9UN70-2|PCDHGC3	ENSG00000240184|ENST00000308177|PCDHGC3	ENSG00000240184|ENST00000308177|PCDHGC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8326416015625	2	563.83258	1125.65061	0.25961	0.00014637	-0.18568	-0.00010469	0.073924	4.1681E-05	563.832404574453	42.973	0.6009	42.973	42.706	43.307	0					61	21	4	0	0	0	0.036299	1	9393	9393		57.204	17.254	1	1323100			1690	8518	923	923	2119	2119					0.09280792288700468
APSGTRVVQVL	11	Unmodified	_APSGTRVVQVL_					0	0	0		ENSG00000240184|ENST00000308177|PCDHGC3;nc|ENSG00000240184|Q9UN70-2|PCDHGC3	ENSG00000240184|ENST00000308177|PCDHGC3	ENSG00000240184|ENST00000308177|PCDHGC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.83251953125	2	563.83258	1125.65061	0.32572	0.00018365	-0.39787	-0.00022433	-0.07215	-4.068E-05	563.8323127501336	42.817	0.59498	42.902	42.676	43.271	0.085201					52	21	3	0	0	0	0.036299	1	9367	9367		57.204	15.248	1	1270900			1691	8518	923	923	2120	2120					0.09280792288700468
APSGTRVVQVL	11	Unmodified	_APSGTRVVQVL_					0	0	0		ENSG00000240184|ENST00000308177|PCDHGC3;nc|ENSG00000240184|Q9UN70-2|PCDHGC3	ENSG00000240184|ENST00000308177|PCDHGC3	ENSG00000240184|ENST00000308177|PCDHGC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.832763671875	2	563.83258	1125.65061	0.039926	2.2512E-05	-0.068549	-3.865E-05	-0.028623	-1.6138E-05	563.8325039022427	42.817	0.78349	42.909	42.607	43.391	0.091362					51	28	3	0	0	0	0.0096108	1	9333	9333		70.496	24.473	1	1255900			1692	8518	923	923	2121	2121					0.09280792288700468
APSKSRLLAT	10	Unmodified	_APSKSRLLAT_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.3135375976562	2	522.314023	1042.61349	0.59957	0.00031316	-1.3743	-0.00071783	-0.77475	-0.00040466	522.3133154629368	21.327	0.64882	21.216	20.95	21.599	-0.11003					47	22	3	0	0	0	0.32099	2	2835	2783;2835		17.863	10.254	1	196320			1693	8441	924	924	2122;2123	2123					0.09389120742957857
APSKSRLLAT	10	Unmodified	_APSKSRLLAT_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.314023	1042.61349	0.50616	0.00026437	-1.3236	-0.00069135	-0.81748	-0.00042698	522.3133564951495	21.296	0.62694	21.245	20.92	21.547	-0.050301	0.031538	0.000113	NaN	17.863	53	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162950			1694	8441	924	924							0.09389120742957857
APSKSRLLATL	11	Unmodified	_APSKSRLLATL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.8562622070312	2	578.856055	1155.69756	0.11863	6.8671E-05	0.34759	0.0002012	0.46622	0.00026987	578.8562273253253	38.348	0.58865	38.348	38.034	38.623	0					77	20	5	0	0	0	1.1372E-12	3	7992	7942;7992;8034		164.48	96.748	1	5446500			1695	8441	925	925	2124;2125;2126	2125					0.1259365183987029
APSKSRLLATL	11	Unmodified	_APSKSRLLATL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.8565063476562	2	578.856055	1155.69756	0.37046	0.00021444	-0.68792	-0.0003982	-0.31746	-0.00018376	578.8552628794213	38.273	0.98356	38.364	38.042	39.026	0.090881					93	35	4	0	0	0	2.7091E-13	4	7916	7916;7964;8003;8047		176.41	114.8	1	5283100			1696	8441	925	925	2127;2128;2129;2130	2127					0.1259365183987029
APSKSRLLATL	11	Unmodified	_APSKSRLLATL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.856201171875	2	578.856055	1155.69756	0.25779	0.00014923	0.18816	0.00010892	0.44596	0.00025815	578.8561387633118	38.237	0.64117	38.334	37.981	38.622	0.097527					80	22	5	0	0	0	6.790600000000001E-19	3	7937	7895;7937;7982		200.78	121.18	1	4913700			1697	8441	925	925	2131;2132;2133	2132					0.1259365183987029
APSKTSLIM	9	Oxidation (M)	_APSKTSLIM(Oxidation (M))_		APSKTSLIM(1)		APSKTSLIM(62)	0	0	1		nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.2623596191406	2	482.26261	962.510668	0.016355	7.8874E-06	0.34936	0.00016848	0.36571	0.00017637	482.26230720108305	27.455	0.80796	27.455	27.146	27.954	0					50	27	4	0	0	0	0.026579	1	4675	4675		61.602	34.718	1	465320			1698	2590	926	926	2134	2134		325			0.027912919599771158
APSKTSLIM	9	Oxidation (M)	_APSKTSLIM(Oxidation (M))_		APSKTSLIM(1)		APSKTSLIM(58)	0	0	1		nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.2625427246094	2	482.26261	962.510668	0.0033605	1.6206E-06	0.22326	0.00010767	0.22662	0.00010929	482.2624067589957	27.431	0.76485	27.41	27.1	27.865	-0.02141					51	26	3	0	0	0	0.037019	1	4681	4681		57.722	21.678	1	534620			1699	2590	926	926	2135	2135		325			0.027912919599771158
APSLFHLNTL	10	Unmodified	_APSLFHLNTL_					0	0	0		ENSG00000164741|ENST00000276297|DLC1;nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1	ENSG00000164741|ENST00000276297|DLC1	ENSG00000164741|ENST00000276297|DLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.808837890625	2	556.808574	1111.60259	0.025163	1.4011E-05	0.087673	4.8817E-05	0.11284	6.2828E-05	556.8087028335364	65.08	0.73857	65.08	64.807	65.545	0					76	26	4	0	0	0	1.5919E-13	1	16227	16227		184.36	101.83	1	2848200			1700	5871	927	927	2136	2136					0.051257183686630015
APSLFHLNTL	10	Unmodified	_APSLFHLNTL_					0	0	0		ENSG00000164741|ENST00000276297|DLC1;nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1	ENSG00000164741|ENST00000276297|DLC1	ENSG00000164741|ENST00000276297|DLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.808837890625	2	556.808574	1111.60259	0.13127	7.309E-05	0.045779	2.549E-05	0.17705	9.8581E-05	556.8086420427435	64.986	0.69702	65.075	64.794	65.491	0.088882					78	25	5	0	0	0	4.6501E-14	1	16174	16174		197.81	115.28	1	3113500			1701	5871	927	927	2137	2137					0.051257183686630015
APSLFHLNTL	10	Unmodified	_APSLFHLNTL_					0	0	0		ENSG00000164741|ENST00000276297|DLC1;nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1	ENSG00000164741|ENST00000276297|DLC1	ENSG00000164741|ENST00000276297|DLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.8087768554688	2	556.808574	1111.60259	-0.07941	-4.4216E-05	0.22935	0.0001277	0.14994	8.3486E-05	556.8087914145254	65.101	0.64493	65.09	64.833	65.478	-0.011337					74	23	4	0	0	0	4.6501E-14	1	16218	16218		197.81	115.28	1	3002200			1702	5871	927	927	2138	2138					0.051257183686630015
APSLHALLL	9	Unmodified	_APSLHALLL_					0	0	0		ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7897033691406	2	467.789653	933.564752	-0.35744	-0.00016721	0.6659	0.0003115	0.30845	0.00014429	467.78983538935705	61.807	0.61333	61.904	61.615	62.228	0.096989					48	21	3	0	0	0	0.062246	1	15227	15227		48.346	10.195	1	712550			1703	6514	928	928	2139	2139					0.09531252173849225
APSLHALLL	9	Unmodified	_APSLHALLL_					0	0	0		ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	467.789653	933.564752	-0.064357	-3.0106E-05	0.38658	0.00018084	0.32222	0.00015073	467.7896494563332	61.935	0.53959	61.935	61.623	62.162	0	0.043123	1.9824E-05	NaN	48.346	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608370			1704	6514	928	928							0.09531252173849225
APSLHALLL	9	Unmodified	_APSLHALLL_					0	0	0		ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	467.789653	933.564752	-0.085149	-3.9832E-05	0.18519	8.6631E-05	0.10004	4.6799E-05	467.7896477190658	61.844	0.58423	61.836	61.582	62.167	-0.0085526	-0.055445	-0.00016859	NaN	48.346	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	617560			1705	6514	928	928							0.09531252173849225
APSLKNAAF	9	Unmodified	_APSLKNAAF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB;ENST00000468818.1_1_1:111992163-111998855:+|nuORF;ENST00000369721.8_1_1:111992139-111998768:+|nuORF	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.5711669921875	2	459.75581	917.497067	-0.26176	-0.00012034	0.48025	0.0002208	0.2185	0.00010045	459.75602369590985	38.665	0.5538	38.665	38.377	38.931	0					55	19	4	0	0	0	0.059216	1	8065	8065		69.105	27.265	1	464040			1706	2725	929	929	2140	2140					0.03501802243022212
APSLKNAAF	9	Unmodified	_APSLKNAAF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB;ENST00000468818.1_1_1:111992163-111998855:+|nuORF;ENST00000369721.8_1_1:111992139-111998768:+|nuORF	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.5714416503906	2	459.75581	917.497067	0.12658	5.8198E-05	0.2495	0.00011471	0.37609	0.00017291	459.7557869778916	38.563	0.51518	38.654	38.427	38.942	0.090881					44	18	3	0	0	0	0.067563	1	8048	8048		66.457	18.111	1	506220			1707	2725	929	929	2141	2141					0.03501802243022212
APSLKNAAF	9	Unmodified	_APSLKNAAF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB;ENST00000468818.1_1_1:111992163-111998855:+|nuORF;ENST00000369721.8_1_1:111992139-111998768:+|nuORF	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.57135009765625	2	459.75581	917.497067	0.27896	0.00012825	0.018514	8.5118E-06	0.29747	0.00013676	459.75574659614233	38.564	0.57354	38.661	38.378	38.951	0.097527					47	20	3	0	0	0	0.090256	1	8035	8035		57.722	21.595	1	562120			1708	2725	929	929	2142	2142					0.03501802243022212
APSLLRII	8	Unmodified	_APSLLRII_					0	0	0		ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.2724304199219	2	441.792195	881.569838	0.30851	0.0001363	-0.56349	-0.00024894	-0.25498	-0.00011265	441.79222681425875	49.235	0.29913	49.235	49.022	49.321	0					16	10	2	0	0	0	0.26527	1	11299	11299		28.487	0	1	87193			1709	3725	930	930	2143	2143					0.12431556036472102
APSLLRIIV	9	Unmodified	_APSLLRIIV_					0	0	0		ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7854309082031	2	491.326402	980.638252	0.42563	0.00020912	-0.10804	-5.3084E-05	0.31759	0.00015604	491.3261957324285	68.9	0.44752	68.9	68.675	69.123	0					23	15	2	0	0	0	0.25346	1	17369	17369		10.8	4.5937	1	111740			1710	3725	931	931	2144	2144					0.14715800616329489
APSLLRIIV	9	Unmodified	_APSLLRIIV_					0	0	0		ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.326402	980.638252	0.35293	0.00017341	0.048668	2.3912E-05	0.4016	0.00019732	491.3262325704232	68.924	0.44631	68.905	68.709	69.155	-0.019157	-0.00025869	0.00015843	NaN	15.248	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151560			1711	3725	931	931							0.14715800616329489
APSMVHSSL	9	Oxidation (M)	_APSM(Oxidation (M))VHSSL_		APSM(1)VHSSL		APSM(100)VHSSL	0	0	1		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.72906494140625	2	472.728935	943.443317	-0.0030253	-1.4301E-06	0.41516	0.00019626	0.41213	0.00019483	472.72904067858065	21.987	0.97293	21.987	21.763	22.736	0					72	34	3	0	0	0	0.0028127	1	3127	3127		103.75	61.909	1	291110			1712	5918	932	932	2145	2145		700			-0.030667382509591334
APSMVHSSL	9	Oxidation (M)	_APSM(Oxidation (M))VHSSL_		APSM(1)VHSSL		APSM(82)VHSSL	0	0	1		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.72894287109375	2	472.728935	943.443317	0.060444	2.8574E-05	0.22324	0.00010553	0.28368	0.00013411	472.72899791964136	22.416	0.74258	22.326	22.164	22.906	-0.09025					59	26	3	0	0	0	0.0083926	1	3163	3163		81.89	43.739	1	218820			1713	5918	932	932	2146	2146		700			-0.030667382509591334
APSMVHSSL	9	Oxidation (M)	_APSM(Oxidation (M))VHSSL_		APSM(1)VHSSL		APSM(100)VHSSL	0	0	1		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.72900390625	2	472.728935	943.443317	0.02312	1.0929E-05	0.28093	0.0001328	0.30405	0.00014373	472.72899044721987	22.427	0.71602	22.382	22.182	22.898	-0.044867					49	24	3	0	0	0	0.0028127	2	3154	3154;3200		103.75	56.827	1	256710			1714	5918	932	932	2147;2148	2147		700			-0.030667382509591334
APSNLRFLAT	10	Unmodified	_APSNLRFLAT_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.272216796875	2	545.306198	1088.59784	0.60287	0.00032875	-0.85485	-0.00046616	-0.25199	-0.00013741	545.3055838086686	49.231	0.67999	49.231	48.995	49.675	0					53	24	3	0	0	0	0.18633	1	11319	11319		49.742	22.113	1	737890			1715	2642	933	933	2149	2149					0.057088342259021374
APSNLRFLAT	10	Unmodified	_APSNLRFLAT_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.272216796875	2	545.306198	1088.59784	0.56789	0.00030967	-0.71668	-0.00039081	-0.14879	-8.1138E-05	545.3056759126073	49.312	0.62376	49.357	49.045	49.669	0.044891					52	22	3	0	0	0	0.19779	1	11337	11337		53.317	25.688	1	862810			1716	2642	933	933	2150	2150					0.057088342259021374
APSNLRFLAT	10	Unmodified	_APSNLRFLAT_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2720336914062	2	545.306198	1088.59784	0.45513	0.00024818	-0.82428	-0.00044948	-0.36915	-0.0002013	545.3056277135404	49.285	0.67365	49.317	48.954	49.628	0.032043					59	23	3	0	0	0	0.22522	1	11352	11352		39.213	21.067	1	738800			1717	2642	933	933	2151	2151					0.057088342259021374
APSPAPLALL	10	Unmodified	_APSPAPLALL_					0	0	0			REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.278564453125	2	475.289485	948.564418	0.17888	8.5022E-05	-0.053371	-2.5367E-05	0.12551	5.9655E-05	475.2893095297325	55.638	0.47041	55.638	55.35	55.82	0					29	16	2	0	0	0	0.30958	1	13274	13274		19.257	2.1441	1	538610	+		1718	16032	934	934	2152	2152					0.08807832453976516
APSPAPLALL	10	Unmodified	_APSPAPLALL_					0	0	0			REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.2789001464844	2	475.289485	948.564418	0.37963	0.00018043	-0.3222	-0.00015314	0.057427	2.7294E-05	475.2892243673383	55.639	0.47618	55.62	55.408	55.884	-0.019081					31	17	2	0	0	0	0.30958	1	13267	13267		19.257	2.1441	1	494010	+		1719	16032	934	934	2153	2153					0.08807832453976516
APSPAPLALL	10	Unmodified	_APSPAPLALL_					0	0	0			REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	475.289485	948.564418	0.47913	0.00022773	-0.021508	-1.0223E-05	0.45762	0.0002175	475.28926519970304	55.549	0.4834	55.62	55.371	55.854	0.070889	-0.0059366	9.4827E-05	NaN	19.257	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	613050	+		1720	16032	934	934							0.08807832453976516
APSPAPLALL	10	Unmodified	_APSPAPLALL_					0	0	0			REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	475.289485	948.564418	0.37963	0.00018043	-0.3222	-0.00015314	0.057427	2.7294E-05	475.2892243673383	55.639	0.47618	55.62	55.408	55.884	-0.019081	-0.0060495	-0.000191	NaN	19.257	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	494010	+		1721	16032	934	934							0.08807832453976516
APSPRPLSL	9	Unmodified	_APSPRPLSL_					0	0	0		MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant;nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.27691650390625	2	469.276909	936.539266	-0.13992	-6.5662E-05	-0.062048	-2.9117E-05	-0.20197	-9.4779E-05	469.2770073526459	41.046	0.75893	41.046	40.796	41.555	0					69	27	3	0	0	0	0.0073901	2	8848	8748;8848		83.429	10.461	1	5079700			1722	5508	935	935	2154;2155	2155					0.06845777651415119
APSPRPLSL	9	Unmodified	_APSPRPLSL_					0	0	0		MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant;nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.27691650390625	2	469.276909	936.539266	0.15976	7.4971E-05	-0.42658	-0.00020018	-0.26682	-0.00012521	469.27681861301824	40.897	0.79135	40.99	40.693	41.484	0.09267					99	29	5	0	0	0	0.0045319	2	8767	8721;8767		90.135	23.678	1	5470000			1723	5508	935	935	2156;2157	2157					0.06845777651415119
APSPRPLSL	9	Unmodified	_APSPRPLSL_					0	0	0		MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant;nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.27691650390625	2	469.276909	936.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.343	1	41.433	40.933	41.933	0.090252								0	0	0	0.14229	1	8903	8903		36.506	3.7205	1				1724	5508	935	935	2158	2158					0.06845777651415119
APSPRPLSL	9	Unmodified	_APSPRPLSL_					0	0	0		MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant;nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.27691650390625	2	469.276909	936.539266	0.058205	2.7314E-05	-0.35171	-0.00016505	-0.29351	-0.00013774	469.2768654164208	40.836	0.84181	40.935	40.666	41.508	0.099407					84	30	3	0	0	0	0.0032746	2	8735	8690;8735		100.09	24.33	1	5292400			1725	5508	935	935	2159;2160	2160					0.06845777651415119
APSPSNPTNPQ	11	Unmodified	_APSPSNPTNPQ_					0	0	0		ENST00000570308.5_1_16:55539538-55539604:+|nuORF	ENST00000570308.5_1_16:55539538-55539604:+|nuORF	ENST00000570308.5_1_16:55539538-55539604:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2645263671875	2	555.264727	1108.5149	0.23965	0.00013307	-0.019797	-1.0993E-05	0.21985	0.00012208	555.264585198041	24.268	0.57736	24.268	23.998	24.575	0					35	19	2	0	0	0	0.36569	1	3687	3687		15.739	0	1	122220			1726	12022	936	936	2161	2161					-0.03501527292769424
APSPSSSRSSF	11	Unmodified	_APSPSSSRSSF_					0	0	0		RSBN1L|p.R379Gfs*9|1|0.31|ENSG00000187257|chr7:77749855-77749855|A/-|frameshift_variant;ENSG00000187257|ENST00000334955|RSBN1L	RSBN1L|p.R379Gfs*9|1|0.31|ENSG00000187257|chr7:77749855-77749855|A/-|frameshift_variant	RSBN1L|p.R379Gfs*9|1|0.31|ENSG00000187257|chr7:77749855-77749855|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2648315429688	2	555.264727	1108.5149	0.23965	0.00013307	-0.019797	-1.0993E-05	0.21985	0.00012208	555.264585198041	24.268	0.57736	24.268	23.998	24.575	0					35	19	2	0	0	0	0.41721	1	3747	3747		8.9762	2.3459	1	122220			1727	7674	937	937	2162	2162					-0.03501527292746687
APSPSSSRSSF	11	Unmodified	_APSPSSSRSSF_					0	0	0		RSBN1L|p.R379Gfs*9|1|0.31|ENSG00000187257|chr7:77749855-77749855|A/-|frameshift_variant;ENSG00000187257|ENST00000334955|RSBN1L	RSBN1L|p.R379Gfs*9|1|0.31|ENSG00000187257|chr7:77749855-77749855|A/-|frameshift_variant	RSBN1L|p.R379Gfs*9|1|0.31|ENSG00000187257|chr7:77749855-77749855|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2648315429688	2	555.264727	1108.5149	0.33011	0.0001833	0.45662	0.00025354	0.78673	0.00043684	555.2647813302035	24.439	0.52637	24.366	24.118	24.645	-0.072559					40	17	3	0	0	0	0.37728	1	3779	3779		14.218	2.7003	1	132080			1728	7674	937	937	2163	2163					-0.03501527292746687
APSPSSSRSSF	11	Unmodified	_APSPSSSRSSF_					0	0	0		RSBN1L|p.R379Gfs*9|1|0.31|ENSG00000187257|chr7:77749855-77749855|A/-|frameshift_variant;ENSG00000187257|ENST00000334955|RSBN1L	RSBN1L|p.R379Gfs*9|1|0.31|ENSG00000187257|chr7:77749855-77749855|A/-|frameshift_variant	RSBN1L|p.R379Gfs*9|1|0.31|ENSG00000187257|chr7:77749855-77749855|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2648315429688	2	555.264727	1108.5149	0.1277	7.0905E-05	0.64286	0.00035695	0.77055	0.00042786	555.2649005616946	24.46	0.48449	24.421	24.135	24.619	-0.038927					27	16	2	0	0	0	0.28246	2	3732	3732;3782		23.801	3.2201	1	121700			1729	7674	937	937	2164;2165	2164					-0.03501527292746687
APSPVYIV	8	Unmodified	_APSPVYIV_					0	0	0			REV__nc|ENSG00000115266|O95996-2|APC2	REV__nc|ENSG00000115266|O95996-2|APC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.5819091796875	2	423.242004	844.469455	0.01603	6.7845E-06	0.38752	0.00016402	0.40355	0.0001708	423.24213465367995	89.34	0.45531	89.431	89.249	89.704	0.090569					49	29	2	0	0	0	0.34218	1	23648	23648		5.2307	5.2307	1	135090	+		1730	14869	938	938	2166	2166					0.04099898982804007
APSQGRPGL	9	Unmodified	_APSQGRPGL_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1;ENST00000498614.5_1_21:47421141-47423924:+|nuORF;ENST00000486023.1_1_21:47422428-47423924:+|nuORF	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7368469238281	2	441.743234	881.471915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.673	1	21.624	21.124	22.124	-0.049377								0	0	0	0.073524	1	2911	2911		53.833	11.738	1				1731	4424	939	939	2167	2167					0.02643747440470179
APSQNRPK	8	Unmodified	_APSQNRPK_					0	0	0		ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.7403869628906	2	449.248683	896.482814	-0.025941	-1.1654E-05	-0.73216	-0.00032892	-0.75811	-0.00034058	449.24821642467964	16.931	0.50244	16.816	16.638	17.14	-0.11434					23	17	2	0	0	0	0.4419	1	1532	1532		8.5933	0.68312	1	62690			1732	5983	940	940	2168	2168					0.030431498147549974
APSQPTRAA	9	Unmodified	_APSQPTRAA_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.7404479980469	2	449.740691	897.466829	0.2885	0.00012975	-0.54547	-0.00024532	-0.25696	-0.00011557	449.7403044851642	17.036	0.86202	16.975	16.756	17.618	-0.060429					42	30	2	0	0	0	0.20626	1	1500	1500		22.736	0	1	192560	+		1733	15759	941	941	2169	2169					0.013994435778386105
APSQQRQQI	9	Unmodified	_APSQQRQQI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000576585.1_1_17:1556769-1557303:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.283447265625	2	528.283254	1054.55196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.564	1	16.564	16.064	17.064	0								0	0	0	0.015736	1	1365	1365		71.708	29.868	1				1734	6781	942	942	2170	2170					0.026861890436521207
APSQQRQQI	9	Unmodified	_APSQQRQQI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000576585.1_1_17:1556769-1557303:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2832641601562	2	528.283254	1054.55196	0.36531	0.00019299	0.14994	7.9211E-05	0.51525	0.0002722	528.2832736558253	16.24	0.74105	16.24	16.008	16.749	0					55	25	4	0	0	0	0.2422	1	1411	1411		19.362	11.452	1	359800			1735	6781	942	942	2171	2171					0.026861890436521207
APSQQRQQI	9	Unmodified	_APSQQRQQI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000576585.1_1_17:1556769-1557303:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2833862304688	2	528.283254	1054.55196	0.22113	0.00011682	0.35423	0.00018713	0.57536	0.00030395	528.2833763347198	16.407	1.0356	16.293	16.02	17.056	-0.11434					99	36	4	0	0	0	0.022205	3	1409	1360;1409;1460		63.227	33.79	1	370640			1736	6781	942	942	2172;2173;2174	2173					0.026861890436521207
APSQQRQQI	9	Unmodified	_APSQQRQQI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000576585.1_1_17:1556769-1557303:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2833862304688	2	528.283254	1054.55196	0.41722	0.00022041	0.10201	5.3893E-05	0.51923	0.0002743	528.2832690772142	16.244	1.1331	16.182	15.943	17.077	-0.062532					66	39	4	0	0	0	0.032589	2	1339	1339;1387		59.368	32.258	1	423470			1737	6781	942	942	2175;2176	2175					0.026861890436521207
APSQQRQQIA	10	Unmodified	_APSQQRQQIA_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000576585.1_1_17:1556769-1557303:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.802001953125	2	563.801811	1125.58907	0.14141	7.9728E-05	0.60394	0.0003405	0.74535	0.00042023	563.8020815371472	16.286	0.59771	16.286	16.035	16.632	0					48	20	3	0	0	0	0.36368	1	1293	1293		10.151	2.5416	1	97055			1738	6781	943	943	2177	2177					0.031298605894335196
APSQQRQQIA	10	Unmodified	_APSQQRQQIA_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000576585.1_1_17:1556769-1557303:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.802001953125	2	563.801811	1125.58907	0.1658	9.348E-05	0.24736	0.00013946	0.41316	0.00023294	563.8018823030312	16.392	0.64841	16.278	16.075	16.723	-0.11434					49	22	3	0	0	0	0.29048	1	1318	1318		21.59	10.766	1	103970			1739	6781	943	943	2178	2178					0.031298605894335196
APSQQRQQIA	10	Unmodified	_APSQQRQQIA_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000576585.1_1_17:1556769-1557303:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.8018798828125	2	563.801811	1125.58907	0.18952	0.00010685	-0.11672	-6.5807E-05	0.0728	4.1044E-05	563.8018383206437	16.317	0.72303	16.254	16.006	16.729	-0.062534					48	24	3	0	0	0	0.31681	1	1286	1286		18.373	8.2992	1	102520			1740	6781	943	943	2179	2179					0.031298605894335196
APSQRLSSF	9	Unmodified	_APSQRLSSF_					0	0	0		ENSG00000179913|ENST00000318683|B3GNT3	ENSG00000179913|ENST00000318683|B3GNT3	ENSG00000179913|ENST00000318683|B3GNT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.8219909667969	2	496.761623	991.508694	0.72019	0.00035776	0.86483	0.00042961	1.585	0.00078738	496.7620675323305	33.991	0.76523	33.991	33.512	34.277	0					52	27	2	0	0	0	0.12563	1	6674	6674		32.786	0	1	208960			1741	7153	944	944	2180	2180					0.012599992663808735
APSRNGMVL	9	Oxidation (M)	_APSRNGM(Oxidation (M))VL_		APSRNGM(1)VL		APSRNGM(100)VL	0	0	1		nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000491523.5_1_16:89627367-89627472:+|nuORF;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.75048828125	2	480.750201	959.48585	0.0030243	1.4539E-06	0.16878	8.1139E-05	0.1718	8.2593E-05	480.75039335119027	22.676	2.0032	22.676	21.94	23.943	0					222	69	5	0	0	0	0.0028542	6	3239	3110;3153;3198;3239;3283;3326		103.42	69.232	1	3319100			1742	6183	945	945	2181;2182;2183;2184;2185;2186	2184		726			0.00448656877256326
APSRNGMVL	9	Oxidation (M)	_APSRNGM(Oxidation (M))VL_		APSRNGM(1)VL		APSRNGM(86)VL	0	0	1		nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000491523.5_1_16:89627367-89627472:+|nuORF;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7503967285156	2	480.750201	959.48585	0.0643	3.0912E-05	0.20619	9.9128E-05	0.27049	0.00013004	480.75038001062126	22.859	2.1799	22.771	21.956	24.136	-0.087608					196	77	3	0	0	0	0.0054984	7	3146	3098;3146;3193;3238;3286;3331;3374		86.332	51.93	1	3841600			1743	6183	945	945	2187;2188;2189;2190;2191;2192;2193	2188		726			0.00448656877256326
APSRNGMVL	9	Oxidation (M)	_APSRNGM(Oxidation (M))VL_		APSRNGM(1)VL		APSRNGM(93)VL	0	0	1		nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000491523.5_1_16:89627367-89627472:+|nuORF;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7503662109375	2	480.750201	959.48585	0.11864	5.7038E-05	0.070877	3.4074E-05	0.18952	9.1113E-05	480.7503428549849	22.847	2.1123	22.802	21.931	24.043	-0.044867					221	74	4	0	0	0	0.0041491	7	3189	3095;3146;3189;3234;3276;3324;3365		93.166	49.241	1	3483200			1744	6183	945	945	2194;2195;2196;2197;2198;2199;2200	2196		726			0.00448656877256326
APSRRNRSSVL	11	Unmodified	_APSRRNRSSVL_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENST00000470400.5_1_3:142720470-142740424:+|nuORF	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.90582275390625	3	414.905698	1241.69527	-0.32292	-0.00013398	0.35716	0.00014819	0.034248	1.421E-05	414.9058289984087	14.968	0.92349	14.968	14.701	15.624	0					84	31	4	0	0	0	0.33432	1	863	863		19.144	19.144	1	1000500			1745	12800	946	946	2201	2201					0.08408616154747506
APSRRNRSSVL	11	Unmodified	_APSRRNRSSVL_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENST00000470400.5_1_3:142720470-142740424:+|nuORF	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.9057312011719	3	414.905698	1241.69527	0.062979	2.613E-05	-0.049568	-2.0566E-05	0.013411	5.5642E-06	414.9056644913551	15.058	0.96375	14.948	14.646	15.61	-0.10982					99	33	4	0	0	0	0.2454	1	910	910		27.129	8.4076	1	855040			1746	12800	946	946	2202	2202					0.08408616154747506
APSRRNRSSVL	11	Unmodified	_APSRRNRSSVL_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENST00000470400.5_1_3:142720470-142740424:+|nuORF	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.9056091308594	3	414.905698	1241.69527	-0.06327	-2.6251E-05	0.015196	6.3049E-06	-0.048074	-1.9946E-05	414.9057200139516	15.122	0.75851	15.057	14.846	15.605	-0.064413					80	25	4	0	0	0	0.11813	1	919	919		38.559	19.838	1	899130			1747	12800	946	946	2203	2203					0.08408616154747506
APSRRNRSSVL	11	Unmodified	_APSRRNRSSVL_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENST00000470400.5_1_3:142720470-142740424:+|nuORF	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	414.905698	1241.69527	-0.32292	-0.00013398	0.35716	0.00014819	0.034248	1.421E-05	414.9058289984087	14.968	0.92349	14.968	14.701	15.624	0	-0.023186	0.00023346	NaN	38.559	84	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1000500			1748	12800	946	946							0.08408616154747506
APSSPRPAL	9	Unmodified	_APSSPRPAL_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.25299072265625	2	448.253434	894.492316	0.199	8.9201E-05	0.057132	2.5609E-05	0.25613	0.00011481	448.253392566357	28.716	0.69666	28.716	28.472	29.169	0					37	24	2	0	0	0	0.19905	1	5061	5061		23.79	3.3752	1	125060			1749	1374	947	947	2204	2204					0.04084918100284085
APSSPRPAL	9	Unmodified	_APSSPRPAL_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	448.253434	894.492316	0.094454	4.2339E-05	-0.44524	-0.00019958	-0.35079	-0.00015724	448.25312647209387	28.728	0.51672	28.724	28.519	29.036	-0.0042572	-0.013348	-0.00020282	NaN	23.79	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106200			1750	1374	947	947							0.04084918100284085
APSSPRPAL	9	Unmodified	_APSSPRPAL_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	448.253434	894.492316	0.045324	2.0317E-05	-0.052392	-2.3485E-05	-0.0070678	-3.1682E-06	448.2532893506607	28.772	0.76905	28.773	28.438	29.207	0.00046921	0.035169	0.00014937	NaN	23.79	41	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123520			1751	1374	947	947							0.04084918100284085
APSSPRPALP	10	Unmodified	_APSSPRPALP_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.82177734375	2	496.779816	991.545079	0.47308	0.00023502	0.14927	7.4155E-05	0.62235	0.00030917	496.77984693861794	35.639	0.7416	35.721	35.461	36.202	0.082355					46	26	2	0	0	0	0.22071	1	7138	7138		38.615	13.624	1	485250			1752	1374	948	948	2205	2205					0.04896876163093111
APTKRKSL	8	Unmodified	_APTKRKSL_					0	0	0		ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;MKI67|p.M746Wfs*10|1|0.24|ENSG00000148773|chr10:128111669-128111669|T/-|frameshift_variant	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7843933105469	2	450.784902	899.55525	-0.16013	-7.2184E-05	-1.1965	-0.00053938	-1.3567	-0.00061156	450.78415303126224	12.288	0.2734	12.288	12.194	12.468	0					17	8	3	0	0	0	0.39102	1	85	85		20.415	3.3016	1	119540			1753	4828	949	949	2206	2206					0.10145483888334184
APTKRKSL	8	Unmodified	_APTKRKSL_					0	0	0		ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;MKI67|p.M746Wfs*10|1|0.24|ENSG00000148773|chr10:128111669-128111669|T/-|frameshift_variant	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.78411865234375	2	450.784902	899.55525	-0.099175	-4.4706E-05	-1.4256	-0.00064263	-1.5248	-0.00068733	450.78408279753313	12.294	0.26174	12.197	12.094	12.356	-0.096607					18	8	3	0	0	0	0.3425	1	87	87		9.3831	2.66	1	98438			1754	4828	949	949	2207	2207					0.10145483888334184
APTKRKSL	8	Unmodified	_APTKRKSL_					0	0	0		ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;MKI67|p.M746Wfs*10|1|0.24|ENSG00000148773|chr10:128111669-128111669|T/-|frameshift_variant	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7842712402344	2	450.784902	899.55525	-0.23485	-0.00010586	-1.0811	-0.00048733	-1.3159	-0.0005932	450.784323873806	12.311	0.29349	12.243	12.14	12.434	-0.06806					22	9	4	0	0	0	0.41709	1	90	90		17.113	3.2068	1	99873			1755	4828	949	949	2208	2208					0.10145483888334184
APTMDAQQDRP	11	Unmodified	_APTMDAQQDRP_					0	0	0		ENST00000545024.1_5:69806308-69808341:+|nuORF;ENST00000515156.2_1_5:68927792-68932223:+|nuORF	ENST00000545024.1_5:69806308-69808341:+|nuORF	ENST00000545024.1_5:69806308-69808341:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.884033203125	3	410.524155	1228.55064	-0.18953	-7.7808E-05	-0.89685	-0.00036818	-1.0864	-0.00044598	410.52363683304736	19.482	0.74335	19.482	19.243	19.986	0					32	26	2	0	0	0	0.33149	1	2364	2364		1.1098	0	1	33399			1756	11422	950	950	2209	2209					-0.054498131074069533
APTPGPVQL	9	Unmodified	_APTPGPVQL_					0	0	0			REV__ENST00000361740.8_1_22:43015308-43015401:-|nuORF	REV__ENST00000361740.8_1_22:43015308-43015401:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2420654296875	2	440.25036	878.486168	-0.040509	-1.7834E-05	-0.2611	-0.00011495	-0.30161	-0.00013278	440.2502491905762	23.496	0.75175	23.417	23.146	23.898	-0.079325					37	26	2	0	0	0	0.25706	1	3412	3412		6.7232	1.4925	1	66619	+		1757	20287	951	951	2210	2210					0.04206399868758126
APTPHRAI	8	Unmodified	_APTPHRAI_					0	0	0			REV__ENST00000498376.1_1_3:49758371-49758735:+|nuORF	REV__ENST00000498376.1_1_3:49758371-49758735:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.85205078125	2	431.748319	861.482085	-0.085614	-3.6964E-05	-3.0849	-0.0013319	-3.1706	-0.0013689	431.7469962372859	39.475	0.30602	39.574	39.511	39.817	0.099407					13	10	2	0	0	0	0.34039	1	8345	8345		6.7232	0	1	216600	+		1758	21696	952	952	2211	2211					0.045803551656945274
APTPIQALTL	10	Unmodified	_APTPIQALTL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.8057861328125	2	512.8055	1023.59645	0.42233	0.00021657	-0.39178	-0.00020091	0.03055	1.5666E-05	512.8053197919859	72.602	0.6999	72.602	72.32	73.02	0					69	25	4	0	0	0	0.10933	1	18498	18498		46.022	21.031	1	558750			1759	1364	953	953	2212	2212					0.0855920013711966
APTPIQALTL	10	Unmodified	_APTPIQALTL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.8054809570312	2	512.8055	1023.59645	0.3806	0.00019518	-0.40499	-0.00020768	-0.02439	-1.2507E-05	512.8052235770166	72.555	0.68353	72.609	72.326	73.01	0.053833					55	24	3	0	0	0	0.076018	1	18484	18484		53.317	15.141	1	605160			1760	1364	953	953	2213	2213					0.0855920013711966
APTPIQALTL	10	Unmodified	_APTPIQALTL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.8057250976562	2	512.8055	1023.59645	0.35444	0.00018176	-0.28535	-0.00014633	0.069087	3.5428E-05	512.805343907546	72.654	0.67705	72.625	72.332	73.009	-0.029305					54	23	3	0	0	0	0.076018	1	18495	18495		53.317	24.822	1	576280			1761	1364	953	953	2214	2214					0.0855920013711966
APTPLMKIK	9	Unmodified	_APTPLMKIK_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.8072814941406	2	499.806988	997.599423	0.26645	0.00013317	0.23595	0.00011793	0.5024	0.0002511	499.8071898339708	69.298	0.72701	69.276	68.946	69.673	-0.022087					45	25	2	0	0	0	0.32733	1	17481	17481		4.756	4.756	1	487480	+		1762	13520	954	954	2215	2215					0.10052751990303932
APTPPGLRNSL	11	Unmodified	_APTPPGLRNSL_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;ENST00000586702.1_1_19:11310175-11313198:-|nuORF	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.81689453125	2	561.81693	1121.61931	0.097413	5.4728E-05	-1.0578	-0.00059427	-0.96035	-0.00053954	561.8169209999073	42.665	1.1439	42.756	42.385	43.529	0.091362					85	41	3	0	0	0	0.35571	1	9292	9292		17.049	2.6432	1	723030			1763	3453	955	955	2216	2216					0.06336219254626485
APTQEKIFAVL	11	Unmodified	_APTQEKIFAVL_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.850341796875	2	608.850438	1215.68632	0.21033	0.00012806	0.22297	0.00013576	0.4333	0.00026382	608.8506283311276	61.499	0.69115	61.499	61.254	61.945	0					59	25	3	0	0	0	0.0039637	2	15097	15097;15148		82.445	53.951	1	1087100			1764	6639	956	956	2217;2218	2217					0.08710829745700721
APTQEKIFAVL	11	Unmodified	_APTQEKIFAVL_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8505249023438	2	608.850438	1215.68632	0.064477	3.9257E-05	0.31793	0.00019357	0.38241	0.00023283	608.8507834263385	61.385	0.75669	61.482	61.221	61.978	0.096985					61	27	3	0	0	0	0.0014237	2	15066	15066;15115		90.964	61.124	1	855250			1765	6639	956	956	2219;2220	2219					0.08710829745700721
APTQEKIFAVL	11	Unmodified	_APTQEKIFAVL_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8507080078125	2	608.850438	1215.68632	0.019103	1.1631E-05	0.38356	0.00023353	0.40266	0.00024516	608.8507240576967	61.453	0.58903	61.443	61.194	61.783	-0.0094566					52	21	3	0	0	0	0.0014237	2	15085	15085;15133		90.964	65.973	1	1000900			1766	6639	956	956	2221;2222	2221					0.08710829745700721
APTVRSKAL	9	Unmodified	_APTVRSKAL_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.7898864746094	2	471.790184	941.565815	-0.038457	-1.8144E-05	0.20853	9.8382E-05	0.17007	8.0238E-05	471.79016872149344	18.257	0.51887	18.257	17.96	18.479	0					28	17	2	0	0	0	0.25714	1	1883	1883		15.248	5.1746	1	79057			1767	4967	957	957	2223	2223					0.0926946654275298
APTVRSKAL	9	Unmodified	_APTVRSKAL_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7900390625	2	471.790184	941.565815	-0.017114	-8.0743E-06	0.012427	5.863E-06	-0.0046871	-2.2114E-06	471.7900937675922	18.349	0.43155	18.232	18.038	18.47	-0.11739					25	14	2	0	0	0	0.25714	1	1918	1918		15.248	3.0078	1	68651			1768	4967	957	957	2224	2224					0.0926946654275298
APTVRSKAL	9	Unmodified	_APTVRSKAL_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.7898864746094	2	471.790184	941.565815	-0.074089	-3.4955E-05	0.15204	7.1733E-05	0.077954	3.6778E-05	471.79025341616415	18.317	0.53442	18.259	18.004	18.539	-0.058174					27	18	2	0	0	0	0.19905	1	1913	1913		23.79	6.6769	1	70814			1769	4967	957	957	2225	2225					0.0926946654275298
APVAPHSPFL	10	Unmodified	_APVAPHSPFL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.295166015625	2	518.284734	1034.55492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.841	1	49.841	49.341	50.341	0								0	0	0	0.34994	1	11513	11513		14.838	0.25658	1				1770	2697	958	958	2226	2226					0.03902064168460129
APVAPHSPFL	10	Unmodified	_APVAPHSPFL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2952270507812	2	518.284734	1034.55492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.808	1	49.828	49.328	50.328	0.020691								0	0	0	0.24846	1	11494	11494		34.102	12.356	1				1771	2697	958	958	2227	2227					0.03902064168460129
APVGVHPSL	9	Unmodified	_APVGVHPSL_					0	0	0		nc|ENSG00000170379|A6NFQ2-2|TCAF2;ENSG00000170379|ENST00000684770|TCAF2;ENST00000494978.5_1_7:143510715-143533742:-|nuORF	nc|ENSG00000170379|A6NFQ2-2|TCAF2	nc|ENSG00000170379|A6NFQ2-2|TCAF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.24334716796875	2	438.750527	875.486502	0.18429	8.0857E-05	-0.21142	-9.276E-05	-0.027131	-1.1904E-05	438.75037782067375	49.195	0.96558	49.195	48.827	49.793	0					56	34	2	0	0	0	0.15464	1	11263	11263		30.225	0	1	669010			1772	6448	959	959	2228	2228					0.04377819588614784
APVKPGPAL	9	Unmodified	_APVKPGPAL_					0	0	0		ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000533900.1_1_11:12023572-12030129:-|nuORF;ENST00000534479.5_1_11:12023699-12030797:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF;ENSG00000050165|ENST00000683431|DKK3	ENST00000530694.5_1_11:12023362-12031257:-|nuORF	ENST00000530694.5_1_11:12023362-12031257:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8873596191406	2	425.263271	848.511988	0.041281	1.7555E-05	-0.23951	-0.00010186	-0.19823	-8.43E-05	425.263023937796	30.157	0.4732	30.157	29.945	30.418	0					31	16	2	0	0	0	0.14099	1	5494	5494		42.095	9.9776	1	303130			1773	661	960	960	2229	2229					0.08167294111046886
APVKPGPAL	9	Unmodified	_APVKPGPAL_					0	0	0		ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000533900.1_1_11:12023572-12030129:-|nuORF;ENST00000534479.5_1_11:12023699-12030797:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF;ENSG00000050165|ENST00000683431|DKK3	ENST00000530694.5_1_11:12023362-12031257:-|nuORF	ENST00000530694.5_1_11:12023362-12031257:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.8871765136719	2	425.263271	848.511988	-0.027469	-1.1682E-05	-0.34117	-0.00014509	-0.36864	-0.00015677	425.26296288869247	30.172	0.50634	30.2	29.964	30.47	0.027946					35	17	3	0	0	0	0.14099	1	5494	5494		34.102	1.9855	1	297100			1774	661	960	960	2230	2230					0.08167294111046886
APVKPGPAL	9	Unmodified	_APVKPGPAL_					0	0	0		ENST00000530694.5_1_11:12023362-12031257:-|nuORF;ENST00000533900.1_1_11:12023572-12030129:-|nuORF;ENST00000534479.5_1_11:12023699-12030797:-|nuORF;ENST00000526218.5_1_11:12000483-12031257:-|nuORF;ENSG00000050165|ENST00000683431|DKK3	ENST00000530694.5_1_11:12023362-12031257:-|nuORF	ENST00000530694.5_1_11:12023362-12031257:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.88726806640625	2	425.263271	848.511988	-0.34259	-0.00014569	-0.047114	-2.0036E-05	-0.3897	-0.00016573	425.2630972062108	30.152	0.46056	30.179	29.987	30.448	0.027157					29	15	2	0	0	0	0.14099	1	5478	5478		42.095	9.9776	1	276480			1775	661	960	960	2231	2231					0.08167294111046886
APVKRASL	8	Unmodified	_APVKRASL_					0	0	0		ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.2432556152344	2	421.266345	840.518136	-0.14167	-5.968E-05	-0.10454	-4.4041E-05	-0.24621	-0.00010372	421.2661758474549	15.818	0.39662	15.753	15.545	15.942	-0.064413					30	13	3	0	0	0	0.33293	1	1126	1126		20.454	3.5113	1	121820			1776	3417	961	961	2232	2232					0.09149812342559471
APVKRASL	8	Unmodified	_APVKRASL_					0	0	0		ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	421.266345	840.518136	-0.18384	-7.7445E-05	-0.15179	-6.3945E-05	-0.33563	-0.00014139	421.2661381164426	15.849	0.40635	15.739	15.549	15.955	-0.10981	0.0025743	-1.9547E-05	NaN	24.021	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123590			1777	3417	961	961							0.09149812342559471
APVMHHLL	8	Unmodified	_APVMHHLL_					0	0	0		LTR2B_dup80|chr4:69056859-69057338:+|1.0325362304678682|0.056701022309805|4.19|520.0|17|3|sense	LTR2B_dup80|chr4:69056859-69057338:+|1.0325362304678682|0.056701022309805|4.19|520.0|17|3|sense	LTR2B_dup80|chr4:69056859-69057338:+|1.0325362304678682|0.056701022309805|4.19|520.0|17|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.2457275390625	2	459.254923	916.495293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.456	1	31.456	30.956	31.956	0								0	0	0	0.3683	1	5880	5880		6.3541	0.59368	1				1778	12516	962	962	2233	2233					0.033704699534496285
APVPPPTSL	9	Unmodified	_APVPPPTSL_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;ENST00000567163.5_1_15:75651578-75652319:-|nuORF;ENST00000563368.5_1_15:75650962-75652298:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENST00000563368.5_1_15:75650962-75652298:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.75274658203125	2	439.752736	877.490919	0.2194	9.648E-05	-0.32206	-0.00014162	-0.10266	-4.5145E-05	439.7526395228358	49.256	1.203	49.256	48.798	50.001	0					89	43	3	0	0	0	0.015674	1	11364	11364		70.716	14.174	1	468810			1779	4301;11929	963	963	2234	2234					0.04727284011528354
APVPPPTSL	9	Unmodified	_APVPPPTSL_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;ENST00000567163.5_1_15:75651578-75652319:-|nuORF;ENST00000563368.5_1_15:75650962-75652298:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENST00000563368.5_1_15:75650962-75652298:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	439.752736	877.490919	0.062003	2.7266E-05	-0.041874	-1.8414E-05	0.02013	8.852E-06	439.75270682457466	49.186	1.0786	49.23	48.878	49.957	0.044891	-0.012557	0.0001222	NaN	70.716	87	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	509420			1780	4301;11929	963	963							0.04727284011528354
APVQIKVEEDF	11	Unmodified	_APVQIKVEEDF_					0	0	0		nc|ENSG00000105619|P0C1Z6-2|TFPT;ENSG00000105619|ENST00000391759|TFPT	nc|ENSG00000105619|P0C1Z6-2|TFPT	nc|ENSG00000105619|P0C1Z6-2|TFPT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.89288330078125	3	425.559082	1273.65542	-0.39798	-0.00016936	-1.2346	-0.0005254	-1.6326	-0.00069477	425.55823066223235	13.067	0.35366	13.067	12.847	13.2	0					32	12	4	0	0	0	0.45819	1	324	324		1.4551	0	1	62288			1781	1998	964	964	2235	2235					0.029536316407984486
APVQRPKL	8	Unmodified	_APVQRPKL_					0	0	0		nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;ENSG00000126391|ENST00000317568|FRMD8;ENST00000440433.1_1_X:64770780-64771062:-|nuORF	nc|ENSG00000126391|Q9BZ67-2|FRMD8	nc|ENSG00000126391|Q9BZ67-2|FRMD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.9176330566406	2	454.787444	907.560336	-0.093373	-4.2465E-05	-1.4278	-0.00064935	-1.5212	-0.00069182	454.7868598014298	23.06	0.46281	23.06	22.815	23.278	0					20	15	2	0	0	0	0.34131	1	3315	3315		12.532	0	1	46854			1782	3270	965	965	2236	2236					0.1028578775093365
APVQRPKL	8	Unmodified	_APVQRPKL_					0	0	0		nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;ENSG00000126391|ENST00000317568|FRMD8;ENST00000440433.1_1_X:64770780-64771062:-|nuORF	nc|ENSG00000126391|Q9BZ67-2|FRMD8	nc|ENSG00000126391|Q9BZ67-2|FRMD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.9173583984375	2	454.787444	907.560336	0.099741	4.5361E-05	-1.2534	-0.00057001	-1.1536	-0.00052465	454.78697985546745	23.136	0.54577	23.092	22.898	23.444	-0.044867					25	19	2	0	0	0	0.34247	1	3351	3351		8.5933	0	1	41956			1783	3270	965	965	2237	2237					0.1028578775093365
APVRVSMQL	9	Oxidation (M)	_APVRVSM(Oxidation (M))QL_		APVRVSM(1)QL		APVRVSM(68)QL	0	0	1		ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.78228759765625	2	508.781502	1015.54845	0.19855	0.00010102	1.0177	0.00051777	1.2162	0.00061879	508.7822586528917	33.265	0.36105	33.265	33.065	33.426	0					22	12	2	0	0	0	0.017549	1	6455	6455		67.838	18.169	1	330120			1784	11626	966	966	2238	2238		959			0.04129802945465144
APVRVSMQL	9	Oxidation (M)	_APVRVSM(Oxidation (M))QL_		APVRVSM(1)QL		APVRVSM(51)QL	0	0	1		ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7818908691406	2	508.781502	1015.54845	0.55671	0.00028325	0.27874	0.00014182	0.83545	0.00042506	508.78165998622745	33.693	0.37778	33.693	33.538	33.916	0					23	13	2	0	0	0	0.053988	1	6600	6600		51.415	26.016	1	249150			1785	11626	966	966	2239	2239		959			0.04129802945465144
APVRVSMQL	9	Oxidation (M)	_APVRVSM(Oxidation (M))QL_		APVRVSM(1)QL		APVRVSM(76)QL	0	0	1		ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7823181152344	2	508.781502	1015.54845	0.22388	0.00011391	-0.09195	-4.6782E-05	0.13193	6.7126E-05	508.7820639471435	33.174	0.44489	33.229	33.002	33.447	0.055309					33	15	3	0	0	0	0.01251	1	6413	6413		75.571	26.043	1	317350			1786	11626	966	966	2240	2240		959			0.04129802945465144
APVRVSMQL	9	Oxidation (M)	_APVRVSM(Oxidation (M))QL_		APVRVSM(1)QL		APVRVSM(63)QL	0	0	1		ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7820739746094	2	508.781502	1015.54845	0.69808	0.00035517	0.64669	0.00032902	1.3448	0.00068419	508.7818425556663	33.569	0.57934	33.635	33.432	34.012	0.06636					36	20	2	0	0	0	0.022205	1	6548	6548		63.227	29.783	1	354390			1787	11626	966	966	2241	2241		959			0.04129802945465144
APVRVSMQL	9	Oxidation (M)	_APVRVSM(Oxidation (M))QL_		APVRVSM(1)QL		APVRVSM(63)QL	0	0	1		ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7825927734375	2	508.781502	1015.54845	0.17153	8.7269E-05	0.80426	0.00040919	0.97579	0.00049646	508.78203858325145	33.143	0.36188	33.198	33.013	33.375	0.054371					20	12	2	0	0	0	0.036702	1	6411	6411		63.227	29.783	1	301660			1788	11626	966	966	2242	2242		959			0.04129802945465144
APVRVSMQL	9	Oxidation (M)	_APVRVSM(Oxidation (M))QL_		APVRVSM(1)QL		APVRVSM(85)QL	0	0	1		ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.78155517578125	2	508.781502	1015.54845	0.10783	5.4862E-05	0.75862	0.00038597	0.86645	0.00044083	508.7819764490346	33.546	0.43823	33.613	33.441	33.879	0.066704					26	15	2	0	0	0	0.029232	1	6529	6529		84.522	38.782	1	350890			1789	11626	966	966	2243	2243		959			0.04129802945465144
APVSQVQL	8	Unmodified	_APVSQVQL_					0	0	0			REV__nc|ENSG00000106976|Q05193-5|DNM1	REV__nc|ENSG00000106976|Q05193-5|DNM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.8919982910156	2	421.242535	840.470518	-0.27839	-0.00011727	0.15472	6.5175E-05	-0.12368	-5.2097E-05	421.2425020908124	23.034	0.85381	23.034	22.763	23.616	0					43	29	2	0	0	0	0.29634	1	3307	3307		34.102	0	1	135280	+		1790	22932	967	967	2244	2244					0.04390113351723812
APVTGKIR	8	Unmodified	_APVTGKIR_					0	0	0		ENST00000281471.10_1_12:31862342-31882100:-|nuORF	ENST00000281471.10_1_12:31862342-31882100:-|nuORF	ENST00000281471.10_1_12:31862342-31882100:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2431335449219	2	421.266345	840.518136	-0.2604	-0.0001097	-0.1299	-5.4721E-05	-0.3903	-0.00016442	421.2662243972817	15.718	0.4191	15.718	15.528	15.947	0					32	14	3	0	0	0	0.34198	1	1099	1099		10.824	0	1	102310			1791	9122	968	968	2245	2245					0.09149812342548103
APVYFPEEL	9	Unmodified	_APVYFPEEL_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.768798828125	2	532.768583	1063.52261	0.59354	0.00031622	-0.33292	-0.00017737	0.26062	0.00013885	532.7682780596149	72.852	1.0674	72.852	72.374	73.441	0					87	38	4	0	0	0	0.013258	2	18563	18563;18610		74.423	51.274	1	913600			1792	1560	969	969	2246;2247	2246					-0.006607680252045611
APVYFPEEL	9	Unmodified	_APVYFPEEL_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7686767578125	2	532.768583	1063.52261	0.38725	0.00020631	-0.13059	-6.9573E-05	0.25666	0.00013674	532.7683861196407	72.768	1.0896	72.822	72.382	73.471	0.053841					84	39	3	0	0	0	0.013258	2	18571	18523;18571		74.423	44.198	1	988420			1793	1560	969	969	2248;2249	2249					-0.006607680252045611
APVYFPEEL	9	Unmodified	_APVYFPEEL_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.768798828125	2	532.768583	1063.52261	0.61587	0.00032812	-0.34188	-0.00018214	0.27399	0.00014598	532.7682301076903	72.846	1.1106	72.817	72.365	73.476	-0.029305					85	39	3	0	0	0	0.00207	3	18599	18552;18599;18688		109.63	79.404	1	1029000			1794	1560	969	969	2250;2251;2252	2251					-0.006607680252045611
APVYLAAVL	9	Unmodified	_APVYLAAVL_					0	0	0		ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000184270|ENST00000331128|H2AC21;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;nc|ENSG00000246705|Q9BTM1-2|H2AJ	ENST00000479986.1_1_6:27858584-27860837:-|nuORF	ENST00000479986.1_1_6:27858584-27860837:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.77874755859375	2	458.778754	915.542954	0.23972	0.00010998	-0.49508	-0.00022713	-0.25536	-0.00011715	458.77860527398684	77.185	1.4141	77.185	76.141	77.555	0					72	51	2	0	0	0	0.11229	1	19933	19933		36.466	0	1	519890			1795	5850	970	970	2253	2253					0.08180447425263537
APVYLAAVL	9	Unmodified	_APVYLAAVL_					0	0	0		ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000184270|ENST00000331128|H2AC21;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;nc|ENSG00000246705|Q9BTM1-2|H2AJ	ENST00000479986.1_1_6:27858584-27860837:-|nuORF	ENST00000479986.1_1_6:27858584-27860837:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7786865234375	2	458.778754	915.542954	0.19731	9.0524E-05	-0.41787	-0.00019171	-0.22056	-0.00010119	458.7786555869873	77.113	1.2798	77.169	76.291	77.571	0.055412					64	45	2	0	0	0	0.11229	1	19859	19859		36.466	0	1	375240			1796	5850	970	970	2254	2254					0.08180447425263537
APVYLAAVL	9	Unmodified	_APVYLAAVL_					0	0	0		ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000184270|ENST00000331128|H2AC21;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;nc|ENSG00000246705|Q9BTM1-2|H2AJ	ENST00000479986.1_1_6:27858584-27860837:-|nuORF	ENST00000479986.1_1_6:27858584-27860837:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7788391113281	2	458.778754	915.542954	0.47836	0.00021946	-0.66688	-0.00030595	-0.18852	-8.6491E-05	458.7785454897979	77.237	1.3329	77.205	76.24	77.573	-0.031334					64	48	2	0	0	0	0.16905	1	19930	19930		28.173	0	1	502550			1797	5850	970	970	2255	2255					0.08180447425263537
APYARPIFL	9	Unmodified	_APYARPIFL_					0	0	0		ENST00000594962.5_1_19:17611587-17615418:+|nuORF;nc|ENSG00000130304|Q6PCB7-2|SLC27A1;ENSG00000130304|ENST00000252595|SLC27A1	ENST00000594962.5_1_19:17611587-17615418:+|nuORF	ENST00000594962.5_1_19:17611587-17615418:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3033447265625	2	524.302927	1046.5913	0.54253	0.00028445	0.077328	4.0543E-05	0.61985	0.00032499	524.3030435169032	57.591	0.82087	57.591	57.165	57.986	0					39	21	2	0	0	0	0.090484	1	13938	13938		54.774	34.32	1	2783400			1798	3465	971	971	2256	2256					0.06986941065179053
APYARPIFL	9	Unmodified	_APYARPIFL_					0	0	0		ENST00000594962.5_1_19:17611587-17615418:+|nuORF;nc|ENSG00000130304|Q6PCB7-2|SLC27A1;ENSG00000130304|ENST00000252595|SLC27A1	ENST00000594962.5_1_19:17611587-17615418:+|nuORF	ENST00000594962.5_1_19:17611587-17615418:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3040161132812	2	524.302927	1046.5913	0.48008	0.00025171	0.17563	9.2082E-05	0.65571	0.00034379	524.3030906221557	57.393	0.62651	57.479	57.318	57.945	0.085621					40	22	2	0	0	0	0.090484	1	13830	13830		54.774	29.374	1	2571300			1799	3465	971	971	2257	2257					0.06986941065179053
APYARPIFL	9	Unmodified	_APYARPIFL_					0	0	0		ENST00000594962.5_1_19:17611587-17615418:+|nuORF;nc|ENSG00000130304|Q6PCB7-2|SLC27A1;ENSG00000130304|ENST00000252595|SLC27A1	ENST00000594962.5_1_19:17611587-17615418:+|nuORF	ENST00000594962.5_1_19:17611587-17615418:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.3193359375	2	524.302927	1046.5913	0.36185	0.00018972	0.26128	0.00013699	0.62313	0.00032671	524.303108723832	57.645	0.88219	57.628	57.31	58.192	-0.0172					46	28	2	0	0	0	0.090484	1	13887	13887		46.021	26.582	1	2886200			1800	3465	971	971	2258	2258					0.06986941065179053
APYERRAMEL	10	Oxidation (M)	_APYERRAM(Oxidation (M))EL_		APYERRAM(1)EL		APYERRAM(43)EL	0	0	1		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.8766174316406	3	417.876529	1250.60776	-0.20467	-8.5525E-05	-0.78904	-0.00032972	-0.9937	-0.00041524	417.87652296278117	25.874	1.4499	25.874	25.475	26.925	0					170	50	5	0	0	0	0.12096	1	4212	4212		43.477	24.333	1	9654400			1801	3462	972	972	2259	2259		440			-0.0075234583102883335
APYERRAMEL	10	Oxidation (M)	_APYERRAM(Oxidation (M))EL_		APYERRAM(1)EL		APYERRAM(78)EL	0	0	1		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.3113403320312	2	626.311155	1250.60776	-0.20265	-0.00012692	0.33165	0.00020772	0.12901	8.0798E-05	626.3113986998176	25.915	0.902	25.877	25.531	26.433	-0.038671					92	31	4	0	0	0	0.014191	1	4220	4220		78.06	39.885	1	1824400			1802	3462	972	972	2260	2260		440			-0.0075234583102883335
APYITRQYR	9	Unmodified	_APYITRQYR_					0	0	0		nc|ENSG00000116731|Q13029-3|PRDM2;ENSG00000116731|ENST00000311066|PRDM2	nc|ENSG00000116731|Q13029-3|PRDM2	nc|ENSG00000116731|Q13029-3|PRDM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3169555664062	2	584.317097	1166.61964	0.031591	1.8459E-05	0.13016	7.6052E-05	0.16175	9.4511E-05	584.3170083622795	15.091	0.99712	15.091	14.845	15.842	0					104	34	4	0	0	0	0.34923	1	1049	1049		1.4819	0.28856	1	423170			1803	2746	973	973	2261	2261					0.04299638974453046
APYKSDFLKAL	11	Unmodified	_APYKSDFLKAL_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.2358093261719	3	418.236051	1251.68632	0.0013628	5.6997E-07	-0.48175	-0.00020149	-0.48039	-0.00020092	418.23578460408515	51.713	0.56259	51.713	51.406	51.969	0					43	20	3	0	0	0	0.24939	1	12071	12071		40.317	28.685	1	534800			1804	4236	974	974	2262	2262					0.07054829745720781
APYKSDFLKAL	11	Unmodified	_APYKSDFLKAL_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2358093261719	3	418.236051	1251.68632	0.005921	2.4764E-06	-0.43579	-0.00018226	-0.42987	-0.00017979	418.2358707145296	51.782	0.61822	51.79	51.532	52.15	0.0079918					49	22	4	0	0	0	0.18116	1	12099	12099		32.518	22.754	1	524140			1805	4236	974	974	2263	2263					0.07054829745720781
APYKSDFLKAL	11	Unmodified	_APYKSDFLKAL_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	418.236051	1251.68632	0.15667	6.5527E-05	-0.5743	-0.00024019	-0.41763	-0.00017467	418.2358074969309	51.587	0.55156	51.634	51.454	52.005	0.046574	-0.078585	-0.00011136	NaN	32.518	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	792490			1806	4236	974	974							0.07054829745720781
APYKYPRKIEF	11	Unmodified	_APYKYPRKIEF_					0	0	0		ENSG00000183747|ENST00000573854|ACSM2A;ENSG00000066813|ENST00000329697|ACSM2B	ENSG00000183747|ENST00000573854|ACSM2A	ENSG00000183747|ENST00000573854|ACSM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2625732421875	3	471.2626	1410.76597	-0.21449	-0.00010108	0.19297	9.094E-05	-0.021516	-1.014E-05	471.26266153042303	38.587	0.71724	38.587	38.295	39.012	0					84	25	4	0	0	0	0.029474	3	8076	8029;8076;8123		59.177	50.891	1	2050200			1807	847	975	975	2264;2265;2266	2265					0.07701896419712284
APYKYPRKIEF	11	Unmodified	_APYKYPRKIEF_					0	0	0		ENSG00000183747|ENST00000573854|ACSM2A;ENSG00000066813|ENST00000329697|ACSM2B	ENSG00000183747|ENST00000573854|ACSM2A	ENSG00000183747|ENST00000573854|ACSM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.26251220703125	3	471.2626	1410.76597	0.19783	9.323E-05	-0.14507	-6.8368E-05	0.052756	2.4862E-05	471.26246227300913	38.525	0.75622	38.616	38.294	39.05	0.090881					89	27	4	0	0	0	0.011476	2	8056	8007;8056		66.55	46.139	1	2444800			1808	847	975	975	2267;2268	2268					0.07701896419712284
APYKYPRKIEF	11	Unmodified	_APYKYPRKIEF_					0	0	0		ENSG00000183747|ENST00000573854|ACSM2A;ENSG00000066813|ENST00000329697|ACSM2B	ENSG00000183747|ENST00000573854|ACSM2A	ENSG00000183747|ENST00000573854|ACSM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2627258300781	3	471.2626	1410.76597	0.31736	0.00014956	-0.399	-0.00018804	-0.081639	-3.8473E-05	471.2623449777706	38.538	0.80399	38.635	38.294	39.098	0.097527					90	28	4	0	0	0	0.011476	2	7996	7996;8041		66.55	53.694	1	2143000			1809	847	975	975	2269;2270	2269					0.07701896419712284
APYPLYPAEL	10	Unmodified	_APYPLYPAEL_					0	0	0		ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.297607421875	2	567.297507	1132.58046	0.26896	0.00015258	0.092469	5.2457E-05	0.36143	0.00020504	567.2975406908457	73.109	1.1823	73.109	72.613	73.795	0					129	40	5	0	0	0	0.0048001	3	18659	18614;18659;18699		92.822	63.741	1	7365400			1810	5281	976	976	2271;2272;2273	2272					0.019474939002293468
APYPLYPAEL	10	Unmodified	_APYPLYPAEL_					0	0	0		ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2976684570312	2	567.297507	1132.58046	0.29721	0.00016861	0.075136	4.2625E-05	0.37235	0.00021123	567.2975010923644	73.079	1.1959	73.133	72.601	73.797	0.053841					141	43	5	0	0	0	0.0027457	3	18628	18585;18628;18677		104.8	63.741	1	7332600			1811	5281	976	976	2274;2275;2276	2275					0.019474939002293468
APYPLYPAEL	10	Unmodified	_APYPLYPAEL_					0	0	0		ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2976684570312	2	567.297507	1132.58046	0.35355	0.00020057	0.0013605	7.718E-07	0.35491	0.00020134	567.2974641116053	73.138	1.1712	73.109	72.657	73.829	-0.029305					137	42	5	0	0	0	0.0048001	3	18651	18602;18651;18700		92.822	63.741	1	7296400			1812	5281	976	976	2277;2278;2279	2278					0.019474939002293468
APYPLYTTEL	10	Unmodified	_APYPLYTTEL_					0	0	0		nc|ENSG00000166831|Q6ZRY4-2|RBPMS2;ENSG00000166831|ENST00000300069|RBPMS2	nc|ENSG00000166831|Q6ZRY4-2|RBPMS2	nc|ENSG00000166831|Q6ZRY4-2|RBPMS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.82177734375	2	584.300247	1166.58594	0.27311	0.00015958	1.1249	0.00065728	1.398	0.00081686	584.8020815248098	69.148	0.28041	69.148	68.977	69.257	0					13	9	2	0	0	0	0.15638	1	17484	17484		37.974	12.575	1	91476			1813	6118	977	977	2280	2280					0.009311726920714136
APYPLYTTEL	10	Unmodified	_APYPLYTTEL_					0	0	0		nc|ENSG00000166831|Q6ZRY4-2|RBPMS2;ENSG00000166831|ENST00000300069|RBPMS2	nc|ENSG00000166831|Q6ZRY4-2|RBPMS2	nc|ENSG00000166831|Q6ZRY4-2|RBPMS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8212890625	2	584.300247	1166.58594	0.28975	0.0001693	2.5708	0.0015021	2.8605	0.0016714	584.3022184360743	69.089	0.45956	69.07	68.921	69.381	-0.019157					22	15	2	0	0	0	0.21644	2	17435	17435;17463		30.637	11.38	1	105460			1814	6118	977	977	2281;2282	2281					0.009311726920714136
APYQFLTAF	9	Unmodified	_APYQFLTAF_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2713623046875	2	529.271293	1056.52803	0.68516	0.00036264	-0.41088	-0.00021747	0.27428	0.00014517	529.2710870813751	82.835	0.66584	82.835	82.534	83.2	0					46	24	2	0	0	0	0.03069	1	21616	21616		60.074	23.947	1	1189100			1815	6835	978	978	2283	2283					0.002029555572789832
APYQFLTAF	9	Unmodified	_APYQFLTAF_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2711791992188	2	529.271293	1056.52803	0.51577	0.00027298	-0.34624	-0.00018326	0.16953	8.9728E-05	529.271126893373	82.736	0.69292	82.809	82.517	83.21	0.073097					51	26	2	0	0	0	0.016723	1	21584	21584		69.105	32.978	1	1520500			1816	6835	978	978	2284	2284					0.002029555572789832
APYQFLTAF	9	Unmodified	_APYQFLTAF_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2711181640625	2	529.271293	1056.52803	0.63724	0.00033727	-0.34103	-0.0001805	0.29621	0.00015678	529.2711226218332	82.828	0.79375	82.807	82.517	83.311	-0.020584					60	31	2	0	0	0	0.019245	1	21614	21614		65.235	21.377	1	1471800			1817	6835	978	978	2285	2285					0.002029555572789832
APYRPPDISL	10	Unmodified	_APYRPPDISL_					0	0	0		nc|ENSG00000170921|Q9HCD6-4|TANC2;nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;nc|ENSG00000170921|Q9HCD6-3|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.8067016601562	2	564.806031	1127.59751	0.43946	0.00024821	-0.13852	-7.8234E-05	0.30094	0.00016997	564.8059619804559	53.968	0.44431	54.024	53.821	54.265	0.056255					30	16	2	0	0	0	0.13386	1	12803	12803		40.725	13.096	1	403400			1818	6497	979	979	2286	2286					0.038814145060541705
APYRPPDISL	10	Unmodified	_APYRPPDISL_					0	0	0		nc|ENSG00000170921|Q9HCD6-4|TANC2;nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;nc|ENSG00000170921|Q9HCD6-3|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.8064575195312	2	564.806031	1127.59751	0.42621	0.00024072	-0.21003	-0.00011863	0.21618	0.0001221	564.8059125445996	54.176	0.53247	54.16	53.919	54.451	-0.015923					32	18	2	0	0	0	0.10152	1	12873	12873		47.732	21.464	1	587540			1819	6497	979	979	2287	2287					0.038814145060541705
APYRTQSSASL	11	Unmodified	_APYRTQSSASL_					0	0	0		ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.8009643554688	2	590.801477	1179.5884	0.14615	8.6344E-05	0.15433	9.118E-05	0.30048	0.00017752	590.8017407611889	28.343	0.45945	28.343	28.181	28.64	0					21	15	2	0	0	0	0.15687	2	4937	4937;4946		35.08	15.718	1	158750			1820	8512	980	980	2288;2289	2288					0.005790211497242126
APYRTQSSASL	11	Unmodified	_APYRTQSSASL_					0	0	0		ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.8019409179688	2	590.801477	1179.5884	0.16491	9.7426E-05	0.21245	0.00012551	0.37735	0.00022294	590.8014936616848	28.328	0.37546	28.324	28.167	28.542	-0.0042572					19	13	2	0	0	0	0.32895	1	4935	4935		19.626	3.4768	1	177460			1821	8512	980	980	2290	2290					0.005790211497242126
APYRTQSSASL	11	Unmodified	_APYRTQSSASL_					0	0	0		ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.8017578125	2	590.801477	1179.5884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.391	1	28.392	27.892	28.892	0.0004673								0	0	0	0.27253	1	4944	4944		24.957	13.462	1				1822	8512	980	980	2291	2291					0.005790211497242126
APYSRPKQL	9	Unmodified	_APYSRPKQL_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.301025390625	2	530.300916	1058.58728	0.28776	0.0001526	-0.17097	-9.0665E-05	0.11679	6.1933E-05	530.3008356972294	23.227	1.1525	23.227	22.791	23.943	0					105	39	5	0	0	0	0.00052839	1	3405	3405		110.55	50.479	1	1479300			1823	7389	981	981	2292	2292					0.06032851571490028
APYSRPKQL	9	Unmodified	_APYSRPKQL_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3008422851562	2	530.300916	1058.58728	0.22998	0.00012196	-0.096648	-5.1252E-05	0.13333	7.0708E-05	530.3008252777074	23.326	0.85872	23.238	22.883	23.741	-0.087608					100	30	5	0	0	0	0.00045155	1	3387	3387		129.77	64.537	1	1501800			1824	7389	981	981	2293	2293					0.06032851571490028
APYSRPKQL	9	Unmodified	_APYSRPKQL_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3009643554688	2	530.300916	1058.58728	0.47249	0.00025056	-0.2851	-0.00015119	0.18739	9.9373E-05	530.300745665956	23.356	0.9735	23.311	22.898	23.872	-0.044867					105	34	5	0	0	0	0.00063099	1	3434	3434		114.65	58.472	1	1449900			1825	7389	981	981	2294	2294					0.06032851571490028
AQAESLRYK	9	Unmodified	_AQAESLRYK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000487417.1_1_12:62415587-62415818:-|nuORF;ENST00000433853.1_1_3:183867695-183868220:+|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2879028320312	2	533.288005	1064.56146	0.30271	0.00016143	-0.19434	-0.00010364	0.10837	5.7792E-05	533.287757130805	18.762	0.64836	18.762	18.563	19.211	0					49	22	3	0	0	0	0.038291	1	2031	2031		57.249	25.981	1	194800			1826	4856	982	982	2295	2295					0.031759573291765264
AQAESLRYK	9	Unmodified	_AQAESLRYK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000487417.1_1_12:62415587-62415818:-|nuORF;ENST00000433853.1_1_3:183867695-183868220:+|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2882080078125	2	533.288005	1064.56146	0.16377	8.7337E-05	0.21605	0.00011522	0.37982	0.00020255	533.287915399622	18.952	0.70227	18.835	18.556	19.258	-0.11739					49	24	4	0	0	0	0.07848	2	2125	2074;2125		42.312	22.951	1	219730			1827	4856	982	982	2296;2297	2297					0.031759573291765264
AQAESLRYK	9	Unmodified	_AQAESLRYK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000487417.1_1_12:62415587-62415818:-|nuORF;ENST00000433853.1_1_3:183867695-183868220:+|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2880249023438	2	533.288005	1064.56146	0.18658	9.9499E-05	0.037731	2.0122E-05	0.22431	0.00011962	533.2879200090284	18.863	0.65909	18.805	18.539	19.198	-0.058172					52	22	3	0	0	0	0.048871	2	2087	2042;2087		53.317	24.822	1	218900			1828	4856	982	982	2298;2299	2299					0.031759573291765264
AQAIFGYSI	9	Unmodified	_AQAIFGYSI_					0	0	0			REV__ENSG00000204703|ENST00000377173|OR2B3	REV__ENSG00000204703|ENST00000377173|OR2B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7884826660156	2	485.255643	968.496732	0.12234	5.9364E-05	2.1319	0.0010345	2.2542	0.0010939	485.256286008396	39.377	0.46793	39.469	39.39	39.858	0.09267					16	16	2	0	0	0	0.2322	1	8320	8320		14.838	0	1	115230	+		1829	18960	983	983	2300	2300					0.011223825231923001
AQARPPGIYK	10	Unmodified	_AQARPPGIYK_					0	0	0		nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-4|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.8140869140625	2	550.81419	1099.61383	0.15152	8.3457E-05	0.67442	0.00037148	0.82594	0.00045494	550.8142946379206	23.089	0.62614	23.089	22.736	23.362	0					36	21	3	0	0	0	0.3258	1	3401	3401		17.113	6.289	1	181540			1830	2399	984	984	2301	2301					0.06800540462791105
AQARPPGIYK	10	Unmodified	_AQARPPGIYK_					0	0	0		nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-4|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.8146362304688	2	550.81419	1099.61383	0.25162	0.0001386	0.75364	0.00041511	1.0053	0.00055371	550.814201349063	23.193	0.61852	23.106	22.762	23.381	-0.087608					34	21	2	0	0	0	0.31143	1	3353	3353		17.113	2.2746	1	159690			1831	2399	984	984	2302	2302					0.06800540462791105
AQARPPGIYK	10	Unmodified	_AQARPPGIYK_					0	0	0		nc|ENSG00000111880|O60942-3|RNGTT;nc|ENSG00000111880|O60942-4|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	nc|ENSG00000111880|O60942-3|RNGTT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.8142700195312	2	550.81419	1099.61383	0.35301	0.00019444	0.78638	0.00043315	1.1394	0.00062759	550.8142099571978	23.207	0.53749	23.162	22.847	23.385	-0.044867					33	19	3	0	0	0	0.2623	1	3369	3369		32.786	7.3864	1	169900			1832	2399	984	984	2303	2303					0.06800540462791105
AQARWKRH	8	Unmodified	_AQARWKRH_					0	0	0			REV__ENST00000395648.7_2_11:44954905-44955061:-|nuORF	REV__ENST00000395648.7_2_11:44954905-44955061:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2575073242188	2	526.796666	1051.57878	0.4604	0.00024254	-1.9805	-0.0010433	-1.5201	-0.00080076	526.7956292580468	16.91	0.25922	16.91	16.81	17.069	0					13	8	2	0	0	0	0.34408	1	1442	1442		2.3027	0.4585	1	44438	+		1833	20638	985	985	2304	2304					0.05505342445508177
AQARWKRH	8	Unmodified	_AQARWKRH_					0	0	0			REV__ENST00000395648.7_2_11:44954905-44955061:-|nuORF	REV__ENST00000395648.7_2_11:44954905-44955061:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2576904296875	2	526.796666	1051.57878	0.56607	0.0002982	-2.43	-0.0012801	-1.864	-0.00098193	526.7957482929181	16.93	0.2949	16.868	16.782	17.077	-0.062384					14	10	2	0	0	0	0.34408	1	1458	1458		2.3027	0.4585	1	45086	+		1834	20638	985	985	2305	2305					0.05505342445508177
AQARWKRH	8	Unmodified	_AQARWKRH_					0	0	0			REV__ENST00000395648.7_2_11:44954905-44955061:-|nuORF	REV__ENST00000395648.7_2_11:44954905-44955061:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	526.796666	1051.57878	0.25108	0.00013227	-1.9362	-0.00102	-1.6851	-0.00088772	526.7958416822578	17.047	0.25268	16.929	16.828	17.081	-0.11739	0.026738	0.00015634	NaN	2.3027	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38065	+		1835	20638	985	985							0.05505342445508177
AQATISFPK	9	Unmodified	_AQATISFPK_					0	0	0		CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant;ENSG00000094804|ENST00000209728|CDC6	CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant	CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7690734863281	2	481.768917	961.523281	0.084797	4.0852E-05	-0.18278	-8.8058E-05	-0.097983	-4.7205E-05	481.7690105546318	40.017	1.1481	40.017	39.402	40.55	0					120	41	5	0	0	0	0.0023895	1	8488	8488		107.1	65.144	1	1748200			1836	102	986	986	2306	2306					0.040980714145121055
AQATISFPK	9	Unmodified	_AQATISFPK_					0	0	0		CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant;ENSG00000094804|ENST00000209728|CDC6	CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant	CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7690124511719	2	481.768917	961.523281	0.363	0.00017488	-0.26559	-0.00012795	0.097403	4.6926E-05	481.768932956173	39.869	1.2249	39.962	39.332	40.557	0.09267					115	43	5	0	0	0	0.0019382	2	8437	8337;8437		110.79	66.934	1	2029000			1837	102	986	986	2307;2308	2308					0.040980714145121055
AQATISFPK	9	Unmodified	_AQATISFPK_					0	0	0		CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant;ENSG00000094804|ENST00000209728|CDC6	CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant	CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.76910400390625	2	481.768917	961.523281	0.29454	0.0001419	-0.10829	-5.2172E-05	0.18625	8.9731E-05	481.7689667308036	39.831	1.1857	39.931	39.212	40.397	0.099407					101	42	4	0	0	0	6.0404E-05	1	8411	8411		147.24	84.668	1	1877400			1838	102	986	986	2309	2309					0.040980714145121055
AQATVHVVK	9	Unmodified	_AQATVHVVK_					0	0	0		ENST00000430374.5_1_2:217279626-217279842:+|nuORF	ENST00000430374.5_1_2:217279626-217279842:+|nuORF	ENST00000430374.5_1_2:217279626-217279842:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.2503967285156	2	476.782359	951.550165	0.04599	2.1927E-05	-0.10664	-5.0844E-05	-0.060649	-2.8916E-05	476.78226898431757	16.171	0.52869	16.057	15.866	16.395	-0.11434					30	17	2	0	0	0	0.24289	1	1226	1226		18.146	8.0724	1	119990			1839	10465	987	987	2310	2310					0.07245180025711306
AQATVHVVK	9	Unmodified	_AQATVHVVK_					0	0	0		ENST00000430374.5_1_2:217279626-217279842:+|nuORF	ENST00000430374.5_1_2:217279626-217279842:+|nuORF	ENST00000430374.5_1_2:217279626-217279842:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.250244140625	2	476.782359	951.550165	0.13238	6.3117E-05	-0.020263	-9.6612E-06	0.11212	5.3456E-05	476.7822951543733	16.15	0.45847	16.088	15.892	16.351	-0.062534					36	15	3	0	0	0	0.24787	1	1236	1236		15.248	8.5253	1	122120			1840	10465	987	987	2311	2311					0.07245180025711306
AQDKYIKKK	9	Unmodified	_AQDKYIKKK_					0	0	0		ENST00000473131.5_1_20:5924535-5931132:-|nuORF;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.337646484375	2	561.337498	1120.66044	-0.070166	-3.9387E-05	0.33309	0.00018698	0.26293	0.00014759	561.337673994721	12.142	0.23319	12.142	12.04	12.273	0					19	10	3	0	0	0	0.30459	1	36	36		8.1555	1.9497	1	78707			1841	1353	988	988	2312	2312					0.10493980294063476
AQDKYIKKK	9	Unmodified	_AQDKYIKKK_					0	0	0		ENST00000473131.5_1_20:5924535-5931132:-|nuORF;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3375244140625	2	561.337498	1120.66044	0.084596	4.7487E-05	-0.026652	-1.4961E-05	0.057945	3.2526E-05	561.3374690340213	12.132	0.19305	12.035	11.929	12.122	-0.096607					20	8	3	0	0	0	0.29124	1	39	39		10.151	4.8537	1	81108			1842	1353	988	988	2313	2313					0.10493980294063476
AQDKYIKKK	9	Unmodified	_AQDKYIKKK_					0	0	0		ENST00000473131.5_1_20:5924535-5931132:-|nuORF;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3372802734375	2	561.337498	1120.66044	-0.18195	-0.00010214	0.48396	0.00027166	0.30201	0.00016953	561.3375118370731	12.129	0.14124	12.061	11.999	12.14	-0.06806					18	7	3	0	0	0	0.32638	1	32	32		4.897	1.6157	1	77423			1843	1353	988	988	2314	2314					0.10493980294063476
AQDLPFVLK	9	Unmodified	_AQDLPFVLK_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2;ENST00000468712.5_1_7:26766479-26894483:-|nuORF	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.8004760742188	2	515.800217	1029.58588	0.34029	0.00017552	0.097249	5.0161E-05	0.43754	0.00022568	515.8003580509029	57.714	1.0113	57.714	57.376	58.387	0					65	35	3	0	0	0	0.060198	1	13942	13942		71.708	39.402	1	1077600			1844	323	989	989	2315	2315					0.07227217482704873
AQDLPFVLK	9	Unmodified	_AQDLPFVLK_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2;ENST00000468712.5_1_7:26766479-26894483:-|nuORF	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2999267578125	2	515.800217	1029.58588	0.28773	0.00014841	0.055645	2.8702E-05	0.34337	0.00017711	515.8003399211249	57.536	1.0422	57.621	57.318	58.36	0.085617					65	36	3	0	0	0	0.086462	1	13873	13873		40.239	19.825	1	1400200			1845	323	989	989	2316	2316					0.07227217482704873
AQDLPFVLK	9	Unmodified	_AQDLPFVLK_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2;ENST00000468712.5_1_7:26766479-26894483:-|nuORF	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.80029296875	2	515.800217	1029.58588	0.14462	7.4593E-05	0.013753	7.0939E-06	0.15837	8.1687E-05	515.8003877025589	57.716	1.1572	57.699	57.31	58.467	-0.0172					83	42	3	0	0	0	0.01909	2	13939	13939;13988		65.474	33.969	1	1257900			1846	323	989	989	2317;2318	2317					0.07227217482704873
AQEIKIAK	8	Unmodified	_AQEIKIAK_					0	0	0			REV__nc|ENSG00000185745|P09914-2|IFIT1	REV__nc|ENSG00000185745|P09914-2|IFIT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7790832519531	2	450.779285	899.544017	-0.14529	-6.5496E-05	-0.66027	-0.00029764	-0.80557	-0.00036313	450.7790221973885	14.003	0.20609	13.937	13.831	14.037	-0.066068					11	6	2	0	0	0	0.34337	1	608	608		5.2307	0	1	36789	+		1847	18406	990	990	2319	2319					0.09022661794165288
AQEIKIAK	8	Unmodified	_AQEIKIAK_					0	0	0			REV__nc|ENSG00000185745|P09914-2|IFIT1	REV__nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	450.779285	899.544017	-0.18977	-8.5543E-05	-0.95304	-0.00042961	-1.1428	-0.00051516	450.7791790881948	13.993	0.23328	13.888	13.79	14.023	-0.10466	-0.024528	-0.00018764	NaN	5.2307	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37895	+		1848	18406	990	990							0.09022661794165288
AQEKERSQ	8	Unmodified	_AQEKERSQ_					0	0	0		nc|ENSG00000204536|Q8TD31|CCHCR1;ENSG00000204536|ENST00000396268|CCHCR1;nc|ENSG00000204536|Q8TD31-3|CCHCR1	nc|ENSG00000204536|Q8TD31|CCHCR1	nc|ENSG00000204536|Q8TD31|CCHCR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2747802734375	2	488.246338	974.478122	0.1224	5.9763E-05	0.036196	1.7673E-05	0.1586	7.7436E-05	488.2461112155923	16.05	0.50634	16.05	15.842	16.349	0					29	17	2	0	0	0	0.34388	1	1263	1263		3.5965	0.31518	1	58340			1849	8236	991	991	2320	2320					-0.010137791186593859
AQENALAQL	9	Unmodified	_AQENALAQL_					0	0	0			REV__nc|ENSG00000126777|Q86UP2-2|KTN1	REV__nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.3091735839844	2	479.253631	956.49271	0.32483	0.00015567	-0.20822	-9.9788E-05	0.11661	5.5886E-05	479.25348702355654	38.41	0.48819	38.507	38.294	38.782	0.097527					33	17	3	0	0	0	0.22701	1	8031	8031		13.615	1.9746	1	267500	+		1850	15322	992	992	2321	2321					0.012722930294557955
AQESAGEALQ	10	Unmodified	_AQESAGEALQ_					0	0	0			REV__ENSG00000196878|ENST00000356082|LAMB3	REV__ENSG00000196878|ENST00000356082|LAMB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2768249511719	2	502.238178	1002.4618	0.22385	0.00011243	0.12842	6.45E-05	0.35228	0.00017693	502.2380342446967	69.525	0.67438	69.502	69.239	69.913	-0.022087					34	24	2	0	0	0	0.31267	1	17522	17522		14.838	1.3304	1	171390	+		1851	18692	993	993	2322	2322					-0.03932905075430426
AQESWYKHTV	10	Unmodified	_AQESWYKHTV_					0	0	0		LRRC49|p.N600Hfs*5|1|0.06|ENSG00000137821|chr15:71037272-71037273|-/CATATACTTTTTTG|frameshift_variant;nc|ENSG00000137821|Q8IUZ0-3|LRRC49;nc|ENSG00000137821|Q8IUZ0-4|LRRC49;ENSG00000137821|ENST00000260382|LRRC49;nc|ENSG00000137821|Q8IUZ0-2|LRRC49;ENST00000560980.5_1_15:71197061-71276639:+|nuORF	LRRC49|p.N600Hfs*5|1|0.06|ENSG00000137821|chr15:71037272-71037273|-/CATATACTTTTTTG|frameshift_variant	LRRC49|p.N600Hfs*5|1|0.06|ENSG00000137821|chr15:71037272-71037273|-/CATATACTTTTTTG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.802734375	2	624.80402	1247.59349	0.16929	0.00010578	-0.73784	-0.00046101	-0.56855	-0.00035523	624.8036570239492	18.666	0.6432	18.666	18.391	19.034	0					56	22	3	0	0	0	0.38027	1	1955	1955		7.1017	2.5729	1	305340			1852	4082	994	994	2323	2323					-0.020406749877110997
AQESWYKHTV	10	Unmodified	_AQESWYKHTV_					0	0	0		LRRC49|p.N600Hfs*5|1|0.06|ENSG00000137821|chr15:71037272-71037273|-/CATATACTTTTTTG|frameshift_variant;nc|ENSG00000137821|Q8IUZ0-3|LRRC49;nc|ENSG00000137821|Q8IUZ0-4|LRRC49;ENSG00000137821|ENST00000260382|LRRC49;nc|ENSG00000137821|Q8IUZ0-2|LRRC49;ENST00000560980.5_1_15:71197061-71276639:+|nuORF	LRRC49|p.N600Hfs*5|1|0.06|ENSG00000137821|chr15:71037272-71037273|-/CATATACTTTTTTG|frameshift_variant	LRRC49|p.N600Hfs*5|1|0.06|ENSG00000137821|chr15:71037272-71037273|-/CATATACTTTTTTG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.3219604492188	2	624.80402	1247.59349	-0.14897	-9.3076E-05	-0.47757	-0.00029839	-0.62653	-0.00039146	624.8037983081764	18.741	0.73976	18.683	18.458	19.198	-0.058172					65	25	4	0	0	0	0.39009	1	1982	1982		5.2969	0.39987	1	335000			1853	4082	994	994	2324	2324					-0.020406749877110997
AQEYETMLNI	10	Unmodified	_AQEYETMLNI_					0	0	0		ENST00000506277.1_1_5:36886275-36886596:+|nuORF	ENST00000506277.1_1_5:36886275-36886596:+|nuORF	ENST00000506277.1_1_5:36886275-36886596:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.5697021484375	3	404.525273	1210.55399	-0.069757	-2.8219E-05	1.3751	0.00055628	1.3054	0.00052806	404.525799218968	23.587	0.45052	23.548	23.231	23.681	-0.038927					48	15	5	0	0	0	0.32137	1	3431	3431		0.62683	0	1	99198			1854	11325	995	995	2325	2325					-0.04286563053392456
AQFIPKFFK	9	Unmodified	_AQFIPKFFK_					0	0	0		nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;ENST00000530300.1_1_11:43333659-43340360:+|nuORF	nc|ENSG00000166181|Q9BZZ5-2|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3272705078125	2	563.326402	1124.63825	0.58723	0.0003308	0.51357	0.00028931	1.1008	0.00062011	563.3266266432249	52.769	0.40524	52.82	52.579	52.984	0.050575					23	14	2	0	0	0	0.20167	1	12423	12423		29.082	19.734	1	337220			1855	6041	996	996	2326	2326					0.0809180061630741
AQFIPKFFK	9	Unmodified	_AQFIPKFFK_					0	0	0		nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;ENST00000530300.1_1_11:43333659-43340360:+|nuORF	nc|ENSG00000166181|Q9BZZ5-2|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.326402	1124.63825	0.34487	0.00019428	0.40654	0.00022901	0.75141	0.00042329	563.3266772175298	52.767	0.40986	52.767	52.55	52.96	0	-0.074389	-2.775E-05	NaN	29.082	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277820			1856	6041	996	996							0.0809180061630741
AQFIPKFFK	9	Unmodified	_AQFIPKFFK_					0	0	0		nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;ENST00000530300.1_1_11:43333659-43340360:+|nuORF	nc|ENSG00000166181|Q9BZZ5-2|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	563.326402	1124.63825	0.27305	0.00015382	0.40803	0.00022986	0.68109	0.00038367	563.3265588727733	52.946	0.42861	52.937	52.737	53.166	-0.0096054	0.095534	-2.6064E-05	NaN	29.082	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305440			1857	6041	996	996							0.0809180061630741
AQGNVYHLK	9	Unmodified	_AQGNVYHLK_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2777099609375	2	515.277441	1028.54033	0.1087	5.601E-05	0.57078	0.00029411	0.67948	0.00035012	515.2776126871489	19.097	0.59723	19.097	18.864	19.461	0					49	20	3	0	0	0	0.13643	1	2132	2132		45.7	34.876	1	194360			1858	4475	997	997	2327	2327					0.027199920203202055
AQGNVYHLK	9	Unmodified	_AQGNVYHLK_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2775268554688	2	515.277441	1028.54033	0.12457	6.4189E-05	0.29504	0.00015203	0.41961	0.00021622	515.2775569230862	19.267	0.7507	19.151	18.919	19.67	-0.11592					44	25	2	0	0	0	0.12563	1	2175	2175		47.749	31.902	1	204650			1859	4475	997	997	2328	2328					0.027199920203202055
AQGNVYHLK	9	Unmodified	_AQGNVYHLK_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.277587890625	2	515.277441	1028.54033	0.072013	3.7107E-05	0.49953	0.00025739	0.57154	0.0002945	515.2776066656088	19.224	0.6131	19.168	18.931	19.544	-0.055693					36	20	2	0	0	0	0.059216	1	2161	2161		69.105	42.837	1	221700			1860	4475	997	997	2329	2329					0.027199920203202055
AQGRARASLC	10	Unmodified	_AQGRARASLC_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7720336914062	2	516.772	1031.52945	0.18564	9.5935E-05	0.018002	9.303E-06	0.20364	0.00010524	516.7719411095734	31.516	0.91341	31.516	31.231	32.145	0					85	32	4	0	0	0	0.30958	3	5868	5868;5915;5961		19.257	19.257	1	5069200			1861	511	998	998	2330;2331;2332	2330					0.014942663744022866
AQGRARASLC	10	Unmodified	_AQGRARASLC_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.77197265625	2	516.772	1031.52945	0.098386	5.0843E-05	0.0075896	3.9221E-06	0.10598	5.4765E-05	516.7719533417409	31.454	0.64046	31.496	31.183	31.823	0.042364					55	22	3	0	0	0	0.30958	3	5840	5840;5890;5935		19.257	19.257	1	5011700			1862	511	998	998	2333;2334;2335	2333					0.014942663744022866
AQHLVEFEE	9	Unmodified	_AQHLVEFEE_					0	0	0		ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.290283203125	2	551.264196	1100.51384	0.74894	0.00041287	-0.67027	-0.00036949	0.078678	4.3372E-05	551.2639084499572	78.259	1.8156	78.259	77.822	79.638	0					88	71	2	0	0	0	0.25202	1	20390	20390		10.824	2.2306	1	187000			1863	8021	999	999	2336	2336					-0.03239741661673179
AQHRGERY	8	Unmodified	_AQHRGERY_					0	0	0		nc|ENSG00000165970|Q9Y345-2|SLC6A5;nc|ENSG00000165970|Q9Y345-3|SLC6A5;ENSG00000165970|ENST00000525748|SLC6A5	nc|ENSG00000165970|Q9Y345-2|SLC6A5	nc|ENSG00000165970|Q9Y345-2|SLC6A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.75439453125	2	508.754664	1015.49478	0.54473	0.00027714	-1.6808	-0.00085511	-1.1361	-0.00057798	508.7537862072458	20.686	0.555	20.633	20.254	20.809	-0.05291					33	19	2	0	0	0	0.40115	1	2647	2647		19.257	3.4098	1	109240			1864	6017	1000	1000	2337	2337					-0.0123523344205978
AQHSIFADK	9	Unmodified	_AQHSIFADK_					0	0	0		ENST00000529477.5_1_1:32385166-32403656:-|nuORF;ENST00000468531.1_1_1:32385166-32408168:-|nuORF;ENST00000526960.1_1_1:32385166-32410235:-|nuORF	ENST00000529477.5_1_1:32385166-32403656:-|nuORF	ENST00000529477.5_1_1:32385166-32403656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7631530761719	2	508.761623	1015.50869	0.44869	0.00022828	1.3884	0.00070636	1.8371	0.00093463	508.7622434914256	20.801	0.82452	20.801	20.514	21.338	0					56	27	3	0	0	0	0.067279	3	2642	2642;2692;2735		46.475	28.329	1	275790			1865	11601	1001	1001	2338;2339;2340	2338					0.0015599926638287798
AQHSIFADK	9	Unmodified	_AQHSIFADK_					0	0	0		ENST00000529477.5_1_1:32385166-32403656:-|nuORF;ENST00000468531.1_1_1:32385166-32408168:-|nuORF;ENST00000526960.1_1_1:32385166-32410235:-|nuORF	ENST00000529477.5_1_1:32385166-32403656:-|nuORF	ENST00000529477.5_1_1:32385166-32403656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7628479003906	2	508.761623	1015.50869	0.56021	0.00028501	1.7141	0.00087205	2.2743	0.0011571	508.7624638652878	21.024	0.63222	20.914	20.666	21.298	-0.11003					45	21	3	0	0	0	0.081077	2	2754	2754;2774		41.347	20.893	1	268600			1866	11601	1001	1001	2341;2342	2341					0.0015599926638287798
AQHSIFADK	9	Unmodified	_AQHSIFADK_					0	0	0		ENST00000529477.5_1_1:32385166-32403656:-|nuORF;ENST00000468531.1_1_1:32385166-32408168:-|nuORF;ENST00000526960.1_1_1:32385166-32410235:-|nuORF	ENST00000529477.5_1_1:32385166-32403656:-|nuORF	ENST00000529477.5_1_1:32385166-32403656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.762939453125	2	508.761623	1015.50869	0.45791	0.00023297	1.3266	0.00067494	1.7845	0.00090791	508.7622487118521	20.915	0.6204	20.863	20.613	21.233	-0.05291					46	21	3	0	0	0	0.038413	1	2666	2666		57.204	41.055	1	286760			1867	11601	1001	1001	2343	2343					0.0015599926638287798
AQIDIVISNK	10	Unmodified	_AQIDIVISNK_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.32763671875	2	550.819138	1099.62372	0.51953	0.00028617	-0.45604	-0.0002512	0.063487	3.497E-05	550.8190933952221	44.421	0.3534	44.421	44.28	44.633	0					19	12	2	0	0	0	0.2823	1	9857	9857		30.431	23.142	1	589360			1868	5387	1002	1002	2344	2344					0.07789683677515313
AQIDIVISNK	10	Unmodified	_AQIDIVISNK_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2646484375	2	550.819138	1099.62372	0.60606	0.00033383	-0.62688	-0.0003453	-0.020812	-1.1464E-05	550.8189091186313	44.36	0.43268	44.429	44.249	44.682	0.068573					29	15	3	0	0	0	0.30441	1	9785	9785		17.863	7.0637	1	418590			1869	5387	1002	1002	2345	2345					0.07789683677515313
AQIENSAAVEK	11	Unmodified	_AQIENSAAVEK_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.301513671875	2	580.30131	1158.58807	0.083917	4.8697E-05	0.39771	0.00023079	0.48163	0.00027949	580.3016253820929	22.591	0.74591	22.591	22.331	23.077	0					72	25	4	0	0	0	0.00032499	2	3190	3147;3190		106.29	43.061	1	752890			1870	5595	1003	1003	2346;2347	2347					0.015116014298428126
AQIENSAAVEK	11	Unmodified	_AQIENSAAVEK_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3016357421875	2	580.30131	1158.58807	0.10404	6.0373E-05	0.39456	0.00022897	0.4986	0.00028934	580.3015780501547	22.704	0.66714	22.616	22.379	23.046	-0.087608					70	23	4	0	0	0	7.1646E-09	2	3229	3211;3229		147.42	62.898	1	894540			1871	5595	1003	1003	2348;2349	2349					0.015116014298428126
AQIENSAAVEK	11	Unmodified	_AQIENSAAVEK_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3015747070312	2	580.30131	1158.58807	0.1333	7.7357E-05	0.33256	0.00019298	0.46586	0.00027034	580.3015767764879	22.714	0.75814	22.669	22.379	23.137	-0.044867					72	26	4	0	0	0	5.9251E-06	2	3218	3174;3218		128.14	43.614	1	783050			1872	5595	1003	1003	2350;2351	2351					0.015116014298428126
AQIENSAAVQK	11	Unmodified	_AQIENSAAVQK_					0	0	0		nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3;ENST00000394662.2_1_1:89887573-89889825:+|nuORF;ENSG00000117228|ENST00000370473|GBP1	nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.808837890625	2	579.809302	1157.60405	0.38591	0.00022375	-0.70366	-0.00040799	-0.31775	-0.00018423	579.8088758487421	21.051	1.0852	21.051	20.709	21.795	0					129	37	5	0	0	0	2.6526000000000004E-57	5	2765	2666;2715;2765;2809;2855		288.42	202.08	1	2178800			1873	2784;2783	1004	1004	2352;2353;2354;2355;2356	2354					0.03155307666747831
AQIENSAAVQK	11	Unmodified	_AQIENSAAVQK_					0	0	0		nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3;ENST00000394662.2_1_1:89887573-89889825:+|nuORF;ENSG00000117228|ENST00000370473|GBP1	nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.8092651367188	2	579.809302	1157.60405	0.52326	0.00030339	-0.83101	-0.00048183	-0.30775	-0.00017844	579.8087999809825	21.228	0.86998	21.118	20.836	21.706	-0.11003					104	30	5	0	0	0	7.672100000000001E-57	4	2778	2731;2778;2832;2885		273.62	191.09	1	2632100			1874	2784;2783	1004	1004	2357;2358;2359;2360	2358					0.03155307666747831
AQIENSAAVQK	11	Unmodified	_AQIENSAAVQK_					0	0	0		nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3;ENST00000394662.2_1_1:89887573-89889825:+|nuORF;ENSG00000117228|ENST00000370473|GBP1	nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	579.809302	1157.60405	0.39552	0.00022932	-0.81499	-0.00047254	-0.41947	-0.00024321	579.8088196317797	21.14	1.0771	21.087	20.723	21.8	-0.05291	0.0019226	-3.8157E-05	NaN	288.42	116	37	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2564200			1875	2784;2783	1004	1004							0.03155307666747831
AQIKEHLLK	9	Unmodified	_AQIKEHLLK_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2613525390625	2	540.332216	1078.64988	0.77398	0.0004182	-0.26472	-0.00014304	0.50926	0.00027517	540.3320994362939	20.854	0.22687	20.744	20.553	20.779	-0.11003					11	7	2	0	0	0	0.25441	1	2657	2657		10.151	1.4052	1	46393			1876	4634	1005	1005	2361	2361					0.11369997639667417
AQIRRLEAQF	10	Unmodified	_AQIRRLEAQF_					0	0	0		ENST00000510222.1_1_5:114483036-114505363:-|nuORF	ENST00000510222.1_1_5:114483036-114505363:-|nuORF	ENST00000510222.1_1_5:114483036-114505363:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.22052001953125	3	411.235045	1230.6833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.73	1	39.823	39.323	40.323	0.09267								0	0	0	0.37145	1	8409	8409		5.7834	0	1				1877	11369	1006	1006	2362	2362					0.0771899941155425
AQITATIAK	9	Unmodified	_AQITATIAK_					0	0	0		nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3	nc|ENSG00000011566|Q8IVH8-3|MAP4K3	nc|ENSG00000011566|Q8IVH8-3|MAP4K3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.77667236328125	2	458.776742	915.538931	0.094788	4.3487E-05	0.04746	2.1774E-05	0.14225	6.526E-05	458.7766568414902	28.821	0.75139	28.821	28.548	29.3	0					74	26	4	0	0	0	0.0016481	2	5090	5043;5090		114.5	46.416	1	1152100			1878	447	1007	1007	2363;2364	2364					0.07778357931567825
AQITATIAK	9	Unmodified	_AQITATIAK_					0	0	0		nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3	nc|ENSG00000011566|Q8IVH8-3|MAP4K3	nc|ENSG00000011566|Q8IVH8-3|MAP4K3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7767028808594	2	458.776742	915.538931	0.054882	2.5179E-05	-0.0013964	-6.4063E-07	0.053486	2.4538E-05	458.7766718669367	28.781	0.70847	28.776	28.519	29.228	-0.0042572					58	24	3	0	0	0	0.0019382	2	5085	5041;5085		110.79	45.806	1	1273500			1879	447	1007	1007	2365;2366	2366					0.07778357931567825
AQITATIAK	9	Unmodified	_AQITATIAK_					0	0	0		nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3	nc|ENSG00000011566|Q8IVH8-3|MAP4K3	nc|ENSG00000011566|Q8IVH8-3|MAP4K3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7767333984375	2	458.776742	915.538931	-0.0162	-7.4322E-06	0.20437	9.376E-05	0.18817	8.6327E-05	458.7767233857652	28.785	0.71079	28.785	28.55	29.261	0.0004673					67	25	4	0	0	0	0.0031966	2	5078	5026;5078		100.71	42.03	1	1157000			1880	447	1007	1007	2367;2368	2368					0.07778357931567825
AQKDVPQR	8	Unmodified	_AQKDVPQR_					0	0	0		ENST00000555166.5_2_14:57857320-57866549:+|nuORF;ENST00000554703.1_1_14:57857320-57876115:+|nuORF	ENST00000555166.5_2_14:57857320-57866549:+|nuORF	ENST00000555166.5_2_14:57857320-57866549:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.26434326171875	2	471.261791	940.509028	-0.13665	-6.44E-05	-0.17201	-8.1063E-05	-0.30867	-0.00014546	471.2617441123233	18.578	0.75751	18.52	18.059	18.816	-0.058172					88	26	5	0	0	0	0.45307	1	1904	1904		4.756	0.81161	1	1147300			1881	11837	1008	1008	2369	2369					0.036394189862335224
AQKPFLFFHNK	11	Unmodified	_AQKPFLFFHNK_					0	0	0		nc|ENSG00000136696|Q9NZH7-2|IL36B	nc|ENSG00000136696|Q9NZH7-2|IL36B	nc|ENSG00000136696|Q9NZH7-2|IL36B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.56658935546875	3	459.587307	1375.74009	0.25015	0.00011496	-0.51832	-0.00023821	-0.26817	-0.00012325	459.5870357776762	48.363	0.72922	48.363	48.044	48.773	0					65	25	3	0	0	0	0.33236	1	11010	11010		4.4062	0.56024	1	543370			1882	12718	1009	1009	2370	2370					0.06725046968085735
AQLCLFFL	8	Unmodified	_AQLCLFFL_					0	0	0			REV__THE1B-int_dup38|chr1:59888735-59890293:-|2.5909301945492014|0.1975042163789512|3.71|511.0|86|3|anti-sense	REV__THE1B-int_dup38|chr1:59888735-59890293:-|2.5909301945492014|0.1975042163789512|3.71|511.0|86|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.759521484375	2	477.759507	953.50446	0.043438	2.0753E-05	0.89367	0.00042696	0.93711	0.00044771	477.7597260008578	16.107	0.4923	15.992	15.811	16.304	-0.11434					26	16	2	0	0	0	0.34218	1	1265	1265		9.3474	0	1	92666	+		1883	23327	1010	1010	2371	2371					0.02584818519108012
AQLEHLQKKL	10	Unmodified	_AQLEHLQKKL_					0	0	0			REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.215576171875	3	403.243429	1206.70846	-0.13814	-5.5703E-05	0.6516	0.00026275	0.51347	0.00020705	403.24349749103555	21.727	0.56721	21.678	21.207	21.774	-0.049377					27	19	2	0	0	0	0.32068	1	2937	2937		3.5871	0.74377	1	71141	+		1884	15736	1011	1011	2372	2372					0.11337054214141062
AQLGALFILK	10	Unmodified	_AQLGALFILK_					0	0	0		ENST00000449777.5_1_2:32417423-32422825:+|nuORF;nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6	ENST00000449777.5_1_2:32417423-32422825:+|nuORF	ENST00000449777.5_1_2:32417423-32422825:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7533569335938	2	537.33951	1072.66447	0.36977	0.00019869	1.5583	0.00083733	1.9281	0.001036	537.3404044626686	69.228	0.30152	69.228	69.097	69.398	0					18	10	2	0	0	0	0.29589	1	17493	17493		22.736	4.5899	1	91776			1885	5034	1012	1012	2373	2373					0.13104069787800654
AQLGALFILK	10	Unmodified	_AQLGALFILK_					0	0	0		ENST00000449777.5_1_2:32417423-32422825:+|nuORF;nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6	ENST00000449777.5_1_2:32417423-32422825:+|nuORF	ENST00000449777.5_1_2:32417423-32422825:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7531127929688	2	537.33951	1072.66447	0.40659	0.00021847	1.3441	0.00072226	1.7507	0.00094073	537.3403926368758	69.344	0.25381	69.322	69.181	69.435	-0.022087					13	8	2	0	0	0	0.29589	1	17483	17483		22.736	6.8891	1	100180			1886	5034	1012	1012	2374	2374					0.13104069787800654
AQLILLSVLYM	11	Unmodified	_AQLILLSVLYM_					0	0	0			REV__ENSG00000055957|ENST00000273283|ITIH1	REV__ENSG00000055957|ENST00000273283|ITIH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2280578613281	3	421.917554	1262.73083	-0.055956	-2.3609E-05	1.1411	0.00048144	1.0851	0.00045783	422.2516328372573	49.456	0.74142	49.488	49.209	49.951	0.032043					56	26	3	0	0	0	0.3287	1	11377	11377		8.7518	0.90574	1	690750	+		1887	13595	1013	1013	2375	2375					0.10997517567534487
AQLISHWK	8	Unmodified	_AQLISHWK_					0	0	0		nc|ENSG00000106366|P05121-2|SERPINE1;ENSG00000106366|ENST00000223095|SERPINE1	nc|ENSG00000106366|P05121-2|SERPINE1	nc|ENSG00000106366|P05121-2|SERPINE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7769775390625	2	491.777077	981.5396	0.33954	0.00016698	-0.032861	-1.616E-05	0.30668	0.00015082	491.776431254285	67.055	1.2196	67.055	66.341	67.561	0					75	42	3	0	0	0	0.42077	1	16854	16854		15.847	2.3393	1	329150			1888	2076	1014	1014	2376	2376					0.04809197371275786
AQLLQLPQEVE	11	Unmodified	_AQLLQLPQEVE_					0	0	0		ENST00000583204.5_1_17:30348129-30360999:+|nuORF;ENSG00000185158|ENST00000543378|LRRC37B;nc|ENSG00000185158|Q96QE4-2|LRRC37B;nc|ENSG00000185158|Q96QE4|LRRC37B	ENST00000583204.5_1_17:30348129-30360999:+|nuORF	ENST00000583204.5_1_17:30348129-30360999:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.348388671875	2	634.34826	1266.68197	0.46824	0.00029703	-0.09036	-5.732E-05	0.37788	0.00023971	634.3477787074107	40.292	0.5263	40.292	40.05	40.576	0					49	18	4	0	0	0	0.36943	1	8594	8594		15.248	0	1	646720			1889	7512	1015	1015	2377	2377					0.059293205321409914
AQLLQLPQEVE	11	Unmodified	_AQLLQLPQEVE_					0	0	0		ENST00000583204.5_1_17:30348129-30360999:+|nuORF;ENSG00000185158|ENST00000543378|LRRC37B;nc|ENSG00000185158|Q96QE4-2|LRRC37B;nc|ENSG00000185158|Q96QE4|LRRC37B	ENST00000583204.5_1_17:30348129-30360999:+|nuORF	ENST00000583204.5_1_17:30348129-30360999:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.34814453125	2	634.34826	1266.68197	0.67365	0.00042733	-0.92193	-0.00058483	-0.24828	-0.0001575	634.347208185489	40.167	0.58649	40.26	40.051	40.637	0.09267					39	20	3	0	0	0	0.32017	1	8549	8549		20.415	0	1	577090			1890	7512	1015	1015	2378	2378					0.059293205321409914
AQLLQLPQEVE	11	Unmodified	_AQLLQLPQEVE_					0	0	0		ENST00000583204.5_1_17:30348129-30360999:+|nuORF;ENSG00000185158|ENST00000543378|LRRC37B;nc|ENSG00000185158|Q96QE4-2|LRRC37B;nc|ENSG00000185158|Q96QE4|LRRC37B	ENST00000583204.5_1_17:30348129-30360999:+|nuORF	ENST00000583204.5_1_17:30348129-30360999:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3485717773438	2	634.34826	1266.68197	0.64484	0.00040906	-0.97388	-0.00061778	-0.32904	-0.00020872	634.3471961175762	40.146	0.52509	40.246	40.038	40.563	0.099403					46	18	4	0	0	0	0.32017	1	8527	8527		20.415	0	1	633360			1891	7512	1015	1015	2379	2379					0.059293205321409914
AQLQEQAK	8	Unmodified	_AQLQEQAK_					0	0	0			REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2	REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2377624511719	2	458.248349	914.482145	-0.21377	-9.7962E-05	1.5818	0.00072484	1.368	0.00062688	458.2483295752357	28.312	0.69461	28.312	28.065	28.76	0					45	23	4	0	0	0	0.41097	1	5034	5034		18.135	4.6271	1	232470	+		1892	17918	1016	1016	2380	2380					0.02148310375048368
AQLSTIRSFLK	11	Unmodified	_AQLSTIRSFLK_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2280578613281	3	421.918834	1262.73467	0.06981	2.9454E-05	-1.4613	-0.00061653	-1.3914	-0.00058708	421.9188319156983	49.501	0.65101	49.501	49.243	49.894	0					50	23	3	0	0	0	0.32987	1	11418	11418		7.4291	0	1	570380			1893	1536	1017	1017	2381	2381					0.11381323385603537
AQLSTIRSFLK	11	Unmodified	_AQLSTIRSFLK_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.22796630859375	3	421.918834	1262.73467	-0.029664	-1.2516E-05	-2.0958	-0.00088426	-2.1255	-0.00089678	422.2513631959648	49.566	0.66397	49.611	49.317	49.981	0.044891					50	24	3	0	0	0	0.32951	1	11412	11412		11.065	0	1	668320			1894	1536	1017	1017	2382	2382					0.11381323385603537
AQMLAFLH	8	Unmodified	_AQMLAFLH_					0	0	0			REV__ENST00000454229.1_1_2:6636110-6636479:-|nuORF	REV__ENST00000454229.1_1_2:6636110-6636479:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.23260498046875	2	465.746931	929.479308	0.18225	8.4884E-05	1.4254	0.00066387	1.6076	0.00074875	465.7476080988619	17.509	0.40848	17.449	17.18	17.588	-0.060429					16	13	2	0	0	0	0.34247	1	1669	1669		8.5933	0.68312	1	28756	+		1895	21147	1018	1018	2383	2383					0.011747637165285596
AQMLDVAIRVK	11	Oxidation (M)	_AQM(Oxidation (M))LDVAIRVK_		AQM(1)LDVAIRVK		AQM(50)LDVAIRVK	0	0	1		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.5760803222656	3	420.57619	1258.70674	-0.40659	-0.000171	-1.1684	-0.0004914	-1.575	-0.0006624	420.57619910372375	38.803	0.9481	38.803	38.32	39.268	0					98	33	5	0	0	0	0.061759	2	8180	8129;8180		49.842	34.104	1	666620			1896	802	1019	1019	2384;2385	2385		102			0.08773677133854108
AQMLDVAIRVK	11	Oxidation (M)	_AQM(Oxidation (M))LDVAIRVK_		AQM(1)LDVAIRVK		AQM(45)LDVAIRVK	0	0	1		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.5760498046875	3	420.57619	1258.70674	0.015555	6.5419E-06	-0.28022	-0.00011785	-0.26466	-0.00011131	420.5759779171673	38.852	0.63145	38.944	38.57	39.201	0.09267					61	22	3	0	0	0	0.078494	1	8141	8141		45.004	34.476	1	797670			1897	802	1019	1019	2386	2386		102			0.08773677133854108
AQMLDVAIRVK	11	Oxidation (M)	_AQM(Oxidation (M))LDVAIRVK_		AQM(1)LDVAIRVK		AQM(50)LDVAIRVK	0	0	1		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.57598876953125	3	420.57619	1258.70674	0.21875	9.2001E-05	-2.0497	-0.00086204	-1.8309	-0.00077004	420.57586206027105	38.706	1.1154	38.804	38.203	39.318	0.098171					111	39	5	0	0	0	0.061759	1	8083	8083		49.842	34.104	1	704840			1898	802	1019	1019	2387	2387		102			0.08773677133854108
AQNAKVIEK	9	Unmodified	_AQNAKVIEK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7931213378906	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.417	1	13.417	12.917	13.917	0								0	0	0	2.747E-11	1	418	418		159.1	87.179	1				1899	496	1020	1020	2388	2388					0.07149145334562945
AQNAKVIEK	9	Unmodified	_AQNAKVIEK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7929382324219	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.46	1	13.361	12.861	13.861	-0.099291								0	0	0	9.4815E-11	1	433	433		147.24	75.318	1				1900	496	1020	1020	2389	2389					0.07149145334562945
AQNAKVIEK	9	Unmodified	_AQNAKVIEK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7930908203125	2	500.792924	999.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.479	1	13.411	12.911	13.911	-0.067496								0	0	0	2.747E-11	1	436	436		159.1	87.179	1				1901	496	1020	1020	2390	2390					0.07149145334562945
AQNPSLFVK	9	Unmodified	_AQNPSLFVK_					0	0	0		nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B	nc|ENSG00000117410|Q99437-2|ATP6V0B	nc|ENSG00000117410|Q99437-2|ATP6V0B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2814025878906	2	502.282192	1002.54983	0.39814	0.00019998	-1.7749	-0.00089149	-1.3767	-0.00069151	502.28077013544254	37.283	1.9121	37.37	36.626	38.538	0.08741					146	69	4	0	0	0	0.0040516	3	7641	7641;7690;7739		93.938	46.344	1	4852400			1902	2791	1021	1021	2391;2392;2393	2391					0.04865760305847289
AQNPSLFVK	9	Unmodified	_AQNPSLFVK_					0	0	0		nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B	nc|ENSG00000117410|Q99437-2|ATP6V0B	nc|ENSG00000117410|Q99437-2|ATP6V0B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.281494140625	2	502.282192	1002.54983	0.46518	0.00023365	-1.8781	-0.00094332	-1.4129	-0.00070967	502.28070282796983	37.224	2.1448	37.318	36.633	38.778	0.093018					154	78	5	0	0	0	0.0066776	4	7628	7599;7628;7674;7730		84.522	39.064	1	5651200			1903	2791	1021	1021	2394;2395;2396;2397	2395					0.04865760305847289
AQQEHPRPYFK	11	Unmodified	_AQQEHPRPYFK_					0	0	0		nc|ENSG00000104361|Q9H841-1|NIPAL2;ENSG00000104361|ENST00000430223|NIPAL2;ENST00000519324.1_1_8:99264547-99306317:-|nuORF	nc|ENSG00000104361|Q9H841-1|NIPAL2	nc|ENSG00000104361|Q9H841-1|NIPAL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.9080505371094	3	467.573837	1399.69968	-0.16662	-7.7908E-05	-0.020093	-9.3952E-06	-0.18671	-8.7303E-05	467.5738236511729	19.34	0.8426	19.34	19.006	19.849	0					94	29	5	0	0	0	0.094126	1	2175	2175		40.714	31.47	1	602350			1904	1884	1022	1022	2398	2398					0.015820805776456837
AQQEHPRPYFK	11	Unmodified	_AQQEHPRPYFK_					0	0	0		nc|ENSG00000104361|Q9H841-1|NIPAL2;ENSG00000104361|ENST00000430223|NIPAL2;ENST00000519324.1_1_8:99264547-99306317:-|nuORF	nc|ENSG00000104361|Q9H841-1|NIPAL2	nc|ENSG00000104361|Q9H841-1|NIPAL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.5736083984375	3	467.573837	1399.69968	0.016579	7.7518E-06	-0.21777	-0.00010182	-0.20119	-9.407E-05	467.57374320273453	19.554	0.89469	19.439	19.116	20.01	-0.11592					96	30	5	0	0	0	0.2876	2	2232	2232;2283		23.34	14.096	1	613580			1905	1884	1022	1022	2399;2400	2399					0.015820805776456837
AQQEHPRPYFK	11	Unmodified	_AQQEHPRPYFK_					0	0	0		nc|ENSG00000104361|Q9H841-1|NIPAL2;ENSG00000104361|ENST00000430223|NIPAL2;ENST00000519324.1_1_8:99264547-99306317:-|nuORF	nc|ENSG00000104361|Q9H841-1|NIPAL2	nc|ENSG00000104361|Q9H841-1|NIPAL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.57373046875	3	467.573837	1399.69968	0.17893	8.3663E-05	-0.31621	-0.00014785	-0.13728	-6.4189E-05	467.573672765134	19.463	0.89818	19.407	19.08	19.978	-0.055693					85	31	4	0	0	0	0.064121	2	2252	2204;2252		49.159	36.303	1	596280			1906	1884	1022	1022	2401;2402	2402					0.015820805776456837
AQQRSHPAMS	10	Unmodified	_AQQRSHPAMS_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B;ARID1B|p.I1593Sfs*8|1|0.36|ENSG00000049618|chr6:157201409-157201409|G/-|frameshift_variant;ARID1B|p.Y1345Wfs*99|1|0.17|ENSG00000049618|chr6:157198870-157198874|ATGGA/-|frameshift_variant;ARID1B|p.S663Ifs*11|1|0.18|ENSG00000049618|chr6:156935561-156935562|-/C|frameshift_variant	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7665405273438	2	556.766914	1111.51928	0.3776	0.00021024	-0.89966	-0.0005009	-0.52206	-0.00029067	556.7660949016145	72.544	0.73263	72.514	72.141	72.873	-0.029297					40	23	2	0	0	0	0.27979	1	18503	18503		21.537	21.537	1	419470			1907	653	1023	1023	2403	2403					-0.03202341350856841
AQRLRLGPF	9	Unmodified	_AQRLRLGPF_					0	0	0			REV__ENST00000228918.8_1_12:6493242-6493407:+|nuORF	REV__ENST00000228918.8_1_12:6493242-6493407:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.76171875	2	529.3169	1056.61925	0.54338	0.00028762	-1.249	-0.0006611	-0.70559	-0.00037348	529.3162325147521	42.001	0.55846	42.09	41.852	42.411	0.08897					27	19	2	0	0	0	0.24739	1	9194	9194		13.508	13.508	1	328490	+		1908	19454	1024	1024	2404	2404					0.09320264045254589
AQRLRLGPF	9	Unmodified	_AQRLRLGPF_					0	0	0			REV__ENST00000228918.8_1_12:6493242-6493407:+|nuORF	REV__ENST00000228918.8_1_12:6493242-6493407:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7615356445312	2	529.3169	1056.61925	0.70056	0.00037082	-1.2867	-0.00068106	-0.58612	-0.00031024	529.3161913206219	41.878	0.39474	41.975	41.87	42.265	0.096622					22	13	2	0	0	0	0.24739	1	9146	9146		13.508	9.1786	1	441820	+		1909	19454	1024	1024	2405	2405					0.09320264045254589
AQRLRLGPF	9	Unmodified	_AQRLRLGPF_					0	0	0			REV__ENST00000228918.8_1_12:6493242-6493407:+|nuORF	REV__ENST00000228918.8_1_12:6493242-6493407:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	529.3169	1056.61925	0.36495	0.00019318	-1.1396	-0.00060324	-0.7747	-0.00041006	529.3162567418956	42.059	0.39651	42.059	41.825	42.221	0	0.017777	0.00010499	NaN	13.508	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397890	+		1910	19454	1024	1024							0.09320264045254589
AQRRRRKLRRP	11	Unmodified	_AQRRRRKLRRP_					0	0	0			REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7962951660156	3	498.322181	1491.94471	0.17717	8.8286E-05	-0.13124	-6.54E-05	0.045927	2.2886E-05	498.3218218297803	42.889	1.1439	42.98	42.385	43.529	0.091362					100	41	4	0	0	0	0.33348	1	9460	9460		0.073264	0	1	798330	+		1911	19968	1025	1025	2406	2406					0.21841843621791668
AQSALFLQH	9	Unmodified	_AQSALFLQH_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.27996826171875	2	507.771991	1013.52943	-0.0016975	-8.6194E-07	0.3562	0.00018087	0.3545	0.00018001	508.27375941424685	42.377	0.26187	42.377	42.306	42.567	0					14	9	2	0	0	0	0.23235	1	9265	9265		11.495	0	1	269680			1912	3453	1026	1026	2407	2407					0.023205896460240183
AQSEIHLQV	9	Unmodified	_AQSEIHLQV_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.8132934570312	2	512.774731	1023.53491	0.042408	2.1746E-05	-0.22272	-0.00011421	-0.18031	-9.246E-05	512.7753684467294	42.527	0.43314	42.527	42.383	42.816	0					36	15	3	0	0	0	0.17696	1	9292	9292		36.506	14.969	1	396720			1913	1332	1027	1027	2408	2408					0.02408268437852712
AQSEIHLQV	9	Unmodified	_AQSEIHLQV_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.8134155273438	2	512.774731	1023.53491	0.26505	0.00013591	-0.083883	-4.3013E-05	0.18117	9.29E-05	512.7757204956694	42.313	0.69635	42.399	42.034	42.731	0.085197					46	24	3	0	0	0	0.18936	1	9188	9188		26.268	10.421	1	316200			1914	1332	1027	1027	2409	2409					0.02408268437852712
AQSEIHLQV	9	Unmodified	_AQSEIHLQV_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.8134155273438	2	512.774731	1023.53491	0.29154	0.00014949	-0.536	-0.00027485	-0.24446	-0.00012535	512.7757130077808	42.26	0.65361	42.351	42.037	42.691	0.091362					45	22	3	0	0	0	0.14646	1	9164	9164		36.506	8.8774	1	387830			1915	1332	1027	1027	2410	2410					0.02408268437852712
AQSTLHSLST	10	Unmodified	_AQSTLHSLST_					0	0	0		ENSG00000149972|ENST00000524871|CNTN5;nc|ENSG00000149972|O94779-2|CNTN5	ENSG00000149972|ENST00000524871|CNTN5	ENSG00000149972|ENST00000524871|CNTN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.1353149414062	2	522.769645	1043.52474	0.31924	0.00016689	0.71342	0.00037296	1.0327	0.00053985	522.7696718087025	17.853	0.47921	17.793	17.472	17.951	-0.060429					23	16	2	0	0	0	0.32139	1	1773	1773		1.3295	0	1	30709			1916	4901	1028	1028	2411	2411					0.004716607126283634
AQSTLHSLST	10	Unmodified	_AQSTLHSLST_					0	0	0		ENSG00000149972|ENST00000524871|CNTN5;nc|ENSG00000149972|O94779-2|CNTN5	ENSG00000149972|ENST00000524871|CNTN5	ENSG00000149972|ENST00000524871|CNTN5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	522.769645	1043.52474	0.22806	0.00011922	0.66347	0.00034684	0.89152	0.00046606	522.7693782235572	17.739	0.57103	17.622	17.386	17.957	-0.11739	-0.085499	-4.2478E-05	NaN	1.3295	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38044			1917	4901	1028	1028							0.004716607126283634
AQTKLENQL	9	Unmodified	_AQTKLENQL_					0	0	0			REV__ENSG00000067900|ENST00000399799|ROCK1	REV__ENSG00000067900|ENST00000399799|ROCK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7760009765625	2	522.787838	1043.56112	0.39125	0.00020454	-0.40109	-0.00020968	-0.009835	-5.1416E-06	522.7875736033308	26.756	0.33927	26.756	26.614	26.953	0					21	11	2	0	0	0	0.25989	1	4436	4436		14.838	0.93222	1	78202	+		1918	13696	1029	1029	2412	2412					0.04108537609340601
AQTKLENQL	9	Unmodified	_AQTKLENQL_					0	0	0			REV__ENSG00000067900|ENST00000399799|ROCK1	REV__ENSG00000067900|ENST00000399799|ROCK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7755126953125	2	522.787838	1043.56112	0.36443	0.00019052	-0.49442	-0.00025848	-0.12999	-6.7957E-05	522.7876964986575	26.848	0.72708	26.826	26.564	27.291	-0.021412					51	25	3	0	0	0	0.17787	1	4453	4453		26.884	6.43	1	113300	+		1919	13696	1029	1029	2413	2413					0.04108537609340601
AQTKLENQL	9	Unmodified	_AQTKLENQL_					0	0	0			REV__ENSG00000067900|ENST00000399799|ROCK1	REV__ENSG00000067900|ENST00000399799|ROCK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.775390625	2	522.787838	1043.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.784	1	26.772	26.272	27.272	-0.01156								0	0	0	0.18374	1	4455	4455		26.884	1.4843	1		+		1920	13696	1029	1029	2414	2414					0.04108537609340601
AQTKLENQL	9	Unmodified	_AQTKLENQL_					0	0	0			REV__ENSG00000067900|ENST00000399799|ROCK1	REV__ENSG00000067900|ENST00000399799|ROCK1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	522.787838	1043.56112	0.36443	0.00019052	-0.49442	-0.00025848	-0.12999	-6.7957E-05	522.7876964986575	26.848	0.72708	26.826	26.564	27.291	-0.021412	0.034899	-5.1809E-05	NaN	26.884	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113300	+		1921	13696	1029	1029							0.04108537609340601
AQVDLERE	8	Unmodified	_AQVDLERE_					0	0	0		nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENSG00000127946|ENST00000336926|HIP1	nc|ENSG00000127946|O00291-3|HIP1	nc|ENSG00000127946|O00291-3|HIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2550964355469	2	480.243264	958.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.404	1	70.465	69.965	70.965	0.060783								0	0	0	0.33717	1	17835	17835		20.454	4.6064	1				1922	3340	1030	1030	2415	2415					-0.008922973501967135
AQVKRHTV	8	Unmodified	_AQVKRHTV_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2428894042969	2	469.780151	937.545748	0.20662	9.7066E-05	0.025914	1.2174E-05	0.23253	0.00010924	469.7802482678699	29.057	0.59556	29.057	28.817	29.413	0					41	21	2	0	0	0	0.34294	1	5149	5149		7.2892	2.5332	1	236230			1923	2610	1031	1031	2416	2416					0.07447715602802418
AQVKRKIL	8	Unmodified	_AQVKRKIL_					0	0	0		ENSG00000175826|ENST00000574322|CTDNEP1	REV__ENSG00000100139|ENST00000215957|MICALL1	REV__ENSG00000100139|ENST00000215957|MICALL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.759521484375	2	478.324194	954.633835	0.04284	2.0492E-05	-0.46584	-0.00022282	-0.423	-0.00020233	478.3240435816154	16.129	0.29843	16.014	15.921	16.219	-0.11434					15	9	2	0	0	0	0.34337	1	1265	1265		5.2307	2.6532	1	25638	+		1924	14164	1032	1032	2417	2417					0.15470336193425283
AQVVLYRSY	9	Unmodified	_AQVVLYRSY_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.8146362304688	2	549.800749	1097.58694	0.2723	0.00014971	-2.6678	-0.0014668	-2.3955	-0.001317	549.7989780117236	23.14	0.47837	23.052	22.82	23.298	-0.087608					40	16	3	0	0	0	0.33276	1	3353	3353		3.9444	0.3479	1	113360			1925	8602	1033	1033	2418	2418					0.042054318516193234
AQVVLYRSY	9	Unmodified	_AQVVLYRSY_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.800749	1097.58694	0.38516	0.00021176	-3.3526	-0.0018432	-2.9674	-0.0016315	549.7989099638154	23.208	0.56717	23.163	22.817	23.385	-0.044867	0.058011	-0.00047581	NaN	3.9444	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88999			1926	8602	1033	1033							0.042054318516193234
AQYDQPLEK	9	Unmodified	_AQYDQPLEK_					0	0	0		ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.80615234375	2	546.272021	1090.52949	0.066568	3.6364E-05	-0.88616	-0.00048408	-0.81959	-0.00044772	546.2710829569343	28.097	0.31088	28.097	27.896	28.207	0					14	10	2	0	0	0	0.22701	1	4883	4883		23.79	10.282	1	78795			1927	2200	1034	1034	2419	2419					-0.012154551446201367
AQYDQPLEK	9	Unmodified	_AQYDQPLEK_					0	0	0		ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8064575195312	2	546.272021	1090.52949	0.28108	0.00015354	-0.85235	-0.00046561	-0.57127	-0.00031207	546.2715310694872	28.11	0.28106	28.106	27.94	28.221	-0.0042572					14	9	2	0	0	0	0.23693	1	4868	4868		21.59	8.0823	1	96815			1928	2200	1034	1034	2420	2420					-0.012154551446201367
AQYDQPLEK	9	Unmodified	_AQYDQPLEK_					0	0	0		ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8063354492188	2	546.272021	1090.52949	0.17227	9.4108E-05	0.93705	0.00051188	1.1093	0.00060599	546.2717897057129	28.025	0.39582	28.026	27.82	28.215	0.0004673					24	13	3	0	0	0	0.24787	1	4865	4865		15.248	0	1	66732			1929	2200	1034	1034	2421	2421					-0.012154551446201367
AQYFLEVKDK	10	Unmodified	_AQYFLEVKDK_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;FRYL|p.E2601Dfs*12|1|0.03|ENSG00000075539|chr4:48515162-48515163|-/TACTTTCA|frameshift_variant	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.56280517578125	3	414.223923	1239.64994	0.28755	0.00011911	-0.61076	-0.00025299	-0.3232	-0.00013388	414.2235549203297	39.327	0.49474	39.427	39.155	39.65	0.099407					28	17	2	0	0	0	0.31651	1	8301	8301		2.8433	0	1	108840			1930	1048	1035	1035	2422	2422					0.039699528490018565
AQYHHQRW	8	Unmodified	_AQYHHQRW_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8018798828125	2	563.270481	1124.52641	0.2556	0.00014397	-2.3385	-0.0013172	-2.0829	-0.0011732	563.2688010660161	24.776	0.28508	24.776	24.673	24.958	0					15	9	2	0	0	0	0.34337	1	3829	3829		5.2307	0	1	53562	+		1931	18643	1036	1036	2423	2423					-0.03087240688091697
AQYQFTGIKK	10	Unmodified	_AQYQFTGIKK_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.3274536132812	2	592.327131	1182.63971	0.33358	0.00019759	0.005861	3.4716E-06	0.33944	0.00020106	592.3270593162227	30.953	0.60658	30.953	30.727	31.333	0					47	21	3	0	0	0	0.030754	1	5762	5762		63.227	48.389	1	414620			1932	6760	1037	1037	2424	2424					0.055693899143989256
AQYQFTGIKK	10	Unmodified	_AQYQFTGIKK_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	592.327131	1182.63971	0.24053	0.00014247	0.13761	8.1513E-05	0.37814	0.00022398	592.3271144678245	31.005	0.58315	31.033	30.749	31.332	0.027946	0.063714	5.8053E-05	NaN	63.227	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419890			1933	6760	1037	1037							0.055693899143989256
AQYQFTGIKK	10	Unmodified	_AQYQFTGIKK_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	592.327131	1182.63971	0.26326	0.00015594	0.1423	8.4291E-05	0.40557	0.00024023	592.3271585252229	30.895	0.62256	30.922	30.669	31.292	0.027157	-0.047216	6.3609E-05	NaN	63.227	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431630			1934	6760	1037	1037							0.055693899143989256
ARAEKEPPLLW	11	Unmodified	_ARAEKEPPLLW_					0	0	0			REV__ENSG00000187105|ENST00000553558|HEATR4	REV__ENSG00000187105|ENST00000553558|HEATR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.74554443359375	3	437.24695	1308.71902	0.20651	9.0297E-05	3.8722	0.0016931	4.0787	0.0017834	437.2483382233278	35.927	0.57008	36.013	35.73	36.3	0.08625					44	20	4	0	0	0	0.3322	1	7216	7216		4.7159	1.1289	1	327590	+		1935	18490	1038	1038	2425	2425					0.07701036868547817
ARAGAQTWRR	10	Unmodified	_ARAGAQTWRR_					0	0	0			REV__ENSG00000181274|ENST00000371019|FRAT2	REV__ENSG00000181274|ENST00000371019|FRAT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.82275390625	2	586.823412	1171.63227	-0.042163	-2.4742E-05	-0.79772	-0.00046812	-0.83988	-0.00049286	586.8227519279234	13.061	0.34823	12.962	12.841	13.189	-0.09929					26	11	3	0	0	0	0.40403	1	341	341		2.7352	0.64919	1	77733	+		1936	18141	1039	1039	2426	2426					0.053320951573596176
ARAPRSTVP	9	Unmodified	_ARAPRSTVP_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.7775573730469	2	477.777608	953.540663	0.4231	0.00020215	0.08122	3.8805E-05	0.50432	0.00024095	477.7776057274182	20.368	2.0644	20.258	19.29	21.355	-0.11003					187	72	4	0	0	0	0.26612	1	2377	2377		13.906	0.86358	1	5172900	+		1937	13757	1040	1040	2427	2427					0.062034117401822186
ARAQREVGAL	10	Unmodified	_ARAQREVGAL_					0	0	0			REV__ENST00000393765.6_1_3:118955754-118959905:-|nuORF	REV__ENST00000393765.6_1_3:118955754-118959905:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2990112304688	2	535.806897	1069.59924	0.14504	7.7715E-05	0.30881	0.00016546	0.45385	0.00024318	535.8071294440158	17.785	0.37761	17.668	17.489	17.866	-0.11739					18	12	2	0	0	0	0.31876	1	1794	1794		7.1017	0.89594	1	61560	+		1938	20612	1041	1041	2428	2428					0.06722468314660546
ARDRWQWW	8	Unmodified	_ARDRWQWW_					0	0	0		ENSG00000185561|ENST00000330676|TLCD2	ENSG00000185561|ENST00000330676|TLCD2	ENSG00000185561|ENST00000330676|TLCD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.2952270507812	2	602.293956	1202.57336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.156	1	12.088	11.588	12.588	-0.06806								0	0	0	0.38004	1	42	42		0.69038	0.088878	1				1939	7542	1042	1042	2429	2429					-0.019823811369633404
ARELSKSGK	9	Unmodified	_ARELSKSGK_					0	0	0		ENSG00000117036|ENST00000368192|ETV3	ENSG00000117036|ENST00000368192|ETV3	ENSG00000117036|ENST00000368192|ETV3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7535400390625	2	488.282723	974.550893	0.081631	3.9859E-05	-0.66996	-0.00032713	-0.58833	-0.00028727	488.28254963825924	15.671	0.41108	15.561	15.285	15.696	-0.10982					23	13	2	0	0	0	0.26031	1	1094	1094		3.5965	1.5367	1	82442			1940	2771	1043	1043	2430	2430					0.06259974674753721
ARFTFDVY	8	Unmodified	_ARFTFDVY_					0	0	0		nc|ENSG00000136305|Q9UHD4|CIDEB	nc|ENSG00000136305|Q9UHD4|CIDEB	nc|ENSG00000136305|Q9UHD4|CIDEB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7533264160156	2	509.753267	1017.49198	0.44413	0.00022639	-0.23918	-0.00012192	0.20494	0.00010447	509.7531572609323	57.296	0.94129	57.296	57.012	57.953	0					66	34	4	0	0	0	0.32789	1	13813	13813		27.629	0.74515	1	430280			1941	12716	1044	1044	2431	2431					-0.016065016195852877
ARFTFDVY	8	Unmodified	_ARFTFDVY_					0	0	0		nc|ENSG00000136305|Q9UHD4|CIDEB	nc|ENSG00000136305|Q9UHD4|CIDEB	nc|ENSG00000136305|Q9UHD4|CIDEB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7534484863281	2	509.753267	1017.49198	0.28448	0.00014501	0.0057576	2.935E-06	0.29024	0.00014795	509.75318137432	57.13	0.77448	57.209	56.983	57.758	0.078674					53	27	4	0	0	0	0.26342	1	13773	13773		32.786	7.3864	1	500260			1942	12716	1044	1044	2432	2432					-0.016065016195852877
ARGPKKHL	8	Unmodified	_ARGPKKHL_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENSG00000280969|ENST00000629237|RPS4Y2;ENSG00000129824|ENST00000250784|RPS4Y1;ENST00000373626.4_1_X:71494279-71497060:-|nuORF	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7848205566406	2	453.785236	905.555919	-0.20039	-9.0933E-05	-0.37973	-0.00017232	-0.58012	-0.00026325	453.78498272263033	12.175	0.31372	12.175	12.018	12.332	0					20	13	2	0	0	0	0.45169	1	55	55		5.2307	2.6532	1	47629			1943	8028	1045	1045	2433	2433					0.09936323328042818
ARGPKKHL	8	Unmodified	_ARGPKKHL_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENSG00000280969|ENST00000629237|RPS4Y2;ENSG00000129824|ENST00000250784|RPS4Y1;ENST00000373626.4_1_X:71494279-71497060:-|nuORF	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	453.785236	905.555919	-0.093436	-4.24E-05	-0.14761	-6.6983E-05	-0.24105	-0.00010938	453.78504690053717	12.166	0.25183	12.069	11.954	12.206	-0.096607	-0.048473	0.00011954	NaN	5.2307	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59389			1944	8028	1045	1045							0.09936323328042818
ARGPKKHL	8	Unmodified	_ARGPKKHL_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENSG00000280969|ENST00000629237|RPS4Y2;ENSG00000129824|ENST00000250784|RPS4Y1;ENST00000373626.4_1_X:71494279-71497060:-|nuORF	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	453.785236	905.555919	-0.27636	-0.00012541	-0.22462	-0.00010193	-0.50098	-0.00022734	453.7849438208414	12.176	0.27519	12.108	11.951	12.226	-0.06806	-0.0091972	4.9652E-05	NaN	5.2307	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59845			1945	8028	1045	1045							0.09936323328042818
ARGRSRTLFL	10	Unmodified	_ARGRSRTLFL_					0	0	0			REV__nc|ENSG00000198171|Q96HY6-2|DDRGK1	REV__nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3427734375	2	588.851638	1175.68872	0.3417	0.00020121	0.25394	0.00014953	0.59564	0.00035074	588.8510280643255	91.587	0.45925	91.678	91.465	91.924	0.090668					59	33	3	0	0	0	0.37133	1	24295	24295		8.7454	1.1365	1	186370	+		1946	18805	1046	1046	2434	2434					0.10790722994033786
ARKEDELFWKL	11	Unmodified	_ARKEDELFWKL_					0	0	0			REV__ENSG00000185339|ENST00000215838|TCN2	REV__ENSG00000185339|ENST00000215838|TCN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.9747314453125	3	478.92951	1433.7667	-0.20758	-9.9415E-05	0.36762	0.00017606	0.16004	7.6648E-05	478.9300196914287	38.997	0.9114	38.997	38.518	39.43	0					95	32	4	0	0	0	0.3331	1	8059	8059		1.0136	0.38675	1	1141000	+		1947	18373	1047	1047	2435	2435					0.06716691068731961
ARKEDELFWKL	11	Unmodified	_ARKEDELFWKL_					0	0	0			REV__ENSG00000185339|ENST00000215838|TCN2	REV__ENSG00000185339|ENST00000215838|TCN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	478.92951	1433.7667	0.16073	7.6977E-05	0.074819	3.5833E-05	0.23555	0.00011281	478.9297804781832	38.897	0.84743	38.989	38.622	39.47	0.09267	0.00147	3.7256E-06	NaN	1.0136	82	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1654200	+		1948	18373	1047	1047							0.06716691068731961
ARKEVCAL	8	Unmodified	_ARKEVCAL_					0	0	0		ENST00000392382.6_1_3:197023293-197024961:-|nuORF	ENST00000392382.6_1_3:197023293-197024961:-|nuORF	ENST00000392382.6_1_3:197023293-197024961:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.6358642578125	2	445.249837	888.485122	-0.82773	-0.00036855	0.33649	0.00014982	-0.49124	-0.00021872	445.25011306282437	34.605	0.38686	34.605	34.418	34.805	0					20	13	2	0	0	0	0.34226	1	6866	6866		3.2813	0	1	147480			1949	10031	1048	1048	2436	2436					0.036418622281985336
ARKEVCAL	8	Unmodified	_ARKEVCAL_					0	0	0		ENST00000392382.6_1_3:197023293-197024961:-|nuORF	ENST00000392382.6_1_3:197023293-197024961:-|nuORF	ENST00000392382.6_1_3:197023293-197024961:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.6358642578125	2	445.249837	888.485122	-0.23626	-0.00010519	0.85411	0.00038029	0.61785	0.0002751	445.25066525161463	34.471	0.31231	34.548	34.363	34.675	0.077377					17	10	2	0	0	0	0.34226	1	6810	6810		3.2813	0	1	146360			1950	10031	1048	1048	2437	2437					0.036418622281985336
ARKRQNPLEP	10	Unmodified	_ARKRQNPLEP_					0	0	0		nc|ENSG00000105609|O75023-2|LILRB5;nc|ENSG00000105609|O75023|LILRB5;ENSG00000105609|ENST00000449561|LILRB5	nc|ENSG00000105609|O75023-2|LILRB5	nc|ENSG00000105609|O75023-2|LILRB5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.8458251953125	2	604.846553	1207.67855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.697	1	97.759	97.259	98.259	0.061516								0	0	0	0.38104	1	26144	26144		1.4819	0	1				1951	1996	1049	1049	2438	2438					0.08302115268816124
ARKTARKR	8	Unmodified	_ARKTARKR_					0	0	0			REV__ENST00000420660.5_1_2:219134176-219134257:-|nuORF	REV__ENST00000420660.5_1_2:219134176-219134257:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.29296875	2	493.820141	985.62573	0.032786	1.6191E-05	2.2846	0.0011282	2.3174	0.0011444	493.8212212322235	14.042	0.34184	13.937	13.763	14.105	-0.10466					13	11	2	0	0	0	0.34437	1	579	579		0.69038	0	1	41324	+		1952	20857	1050	1050	2439	2439					0.13234201996647244
ARLCFAVYAVL	11	Unmodified	_ARLCFAVYAVL_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.8912048339844	3	409.230243	1224.6689	-0.27703	-0.00011337	-0.35484	-0.00014521	-0.63187	-0.00025858	409.2300827783713	13.292	0.35153	13.193	13.011	13.362	-0.099291					13	11	2	0	0	0	0.33326	1	372	372		1.4551	0.67859	1	32489			1953	669	1051	1051	2440	2440					0.06555210939063727
ARLCFAVYAVL	11	Unmodified	_ARLCFAVYAVL_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	409.230243	1224.6689	-0.39902	-0.00016329	-0.23646	-9.6767E-05	-0.63548	-0.00026006	409.56452703940124	13.15	0.33388	13.15	13.031	13.365	0	-0.022463	5.1631E-05	NaN	1.4551	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32478			1954	669	1051	1051							0.06555210939063727
ARLEGFHLF	9	Unmodified	_ARLEGFHLF_					0	0	0			REV__ENST00000519374.5_1_5:172461544-172461586:+|nuORF	REV__ENST00000519374.5_1_5:172461544-172461586:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2957153320312	2	545.295633	1088.57671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.099	1	87.099	86.599	87.599	0								0	0	0	0.22065	1	22952	22952		15.847	5.6638	1		+		1955	21872	1052	1052	2441	2441					0.03596868917043139
ARLHCSWVL	9	Unmodified	_ARLHCSWVL_					0	0	0		ENST00000574260.1_1_17:4891116-4891512:+|nuORF	ENST00000574260.1_1_17:4891116-4891512:+|nuORF	ENST00000574260.1_1_17:4891116-4891512:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2781982421875	2	542.789661	1083.56477	0.33236	0.0001804	-2.8434	-0.0015434	-2.511	-0.001363	542.7881550438722	18.171	0.33139	18.113	17.953	18.285	-0.058172					17	11	2	0	0	0	0.25988	1	1861	1861		3.9444	0.3479	1	42230			1956	12037	1053	1053	2442	2442					0.02632928902198728
ARLHCSWVL	9	Unmodified	_ARLHCSWVL_					0	0	0		ENST00000574260.1_1_17:4891116-4891512:+|nuORF	ENST00000574260.1_1_17:4891116-4891512:+|nuORF	ENST00000574260.1_1_17:4891116-4891512:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	542.789661	1083.56477	0.36884	0.0002002	-3.2022	-0.0017381	-2.8334	-0.0015379	542.7881008932592	18.009	0.43355	18.009	17.835	18.269	0	-0.06011	-0.00023299	NaN	3.9444	16	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32000			1957	12037	1053	1053							0.02632928902198728
ARLHCSWVL	9	Unmodified	_ARLHCSWVL_					0	0	0		ENST00000574260.1_1_17:4891116-4891512:+|nuORF	ENST00000574260.1_1_17:4891116-4891512:+|nuORF	ENST00000574260.1_1_17:4891116-4891512:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	542.789661	1083.56477	0.34924	0.00018957	-2.9411	-0.0015964	-2.5919	-0.0014068	542.7882896645876	18.204	0.251	18.086	17.866	18.117	-0.11739	0.016989	5.0441E-05	NaN	3.9444	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31698			1958	12037	1053	1053							0.02632928902198728
ARLIFFIFSR	10	Unmodified	_ARLIFFIFSR_					0	0	0		nc|ENSG00000174898|Q86XM0-2|CATSPERD	nc|ENSG00000174898|Q86XM0-2|CATSPERD	nc|ENSG00000174898|Q86XM0-2|CATSPERD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	635.3775634765625	2	635.376958	1268.73936	0.16564	0.00010525	2.1458	0.0013634	2.3114	0.0014686	635.3781248312084	18.617	0.50088	18.617	18.363	18.864	0					31	17	2	0	0	0	0.41469	1	2054	2054		0	0	1	63429			1959	12848	1054	1054	2443	2443					0.11574252319019251
ARLWNAKA	8	Unmodified	_ARLWNAKA_					0	0	0			REV__ENSG00000130477|ENST00000519716|UNC13A	REV__ENSG00000130477|ENST00000519716|UNC13A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7459716796875	2	465.269419	928.524284	0.012569	5.8482E-06	-1.6068	-0.00074759	-1.5942	-0.00074175	465.2687067462654	28.762	0.63419	28.763	28.466	29.1	0.0004673					36	22	2	0	0	0	0.34218	1	5143	5143		9.3474	9.3474	1	216930	+		1960	15458	1055	1055	2444	2444					0.05716330574080075
ARLYYFWD	8	Unmodified	_ARLYYFWD_					0	0	0		ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000239713|ENST00000407997|APOBEC3G	ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000239713|ENST00000407997|APOBEC3G	ENSG00000128394|ENST00000308521|APOBEC3F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2745361328125	2	567.274367	1132.53418	0.35177	0.00019955	-0.9798	-0.00055581	-0.62802	-0.00035626	567.2736800974209	20.661	0.57815	20.661	20.395	20.973	0					34	19	2	0	0	0	0.46491	1	2659	2659		0.69038	0	1	93684			1961	3367;8516	1056	1056	2445	2445					-0.026785262112070995
ARMRKIGA	8	Unmodified	_ARMRKIGA_					0	0	0			REV__ENST00000464990.1_1_3:33425426-33427097:+|nuORF	REV__ENST00000464990.1_1_3:33425426-33427097:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7560729980469	2	451.771271	901.52799	-0.16345	-7.384E-05	-2.6564	-0.0012001	-2.8199	-0.0012739	451.7686508416389	12.941	0.49423	12.941	12.815	13.309	0					45	17	5	0	0	0	0.45169	1	339	339		5.2307	1.2863	1	307780	+		1962	16629	1057	1057	2446	2446					0.07328677076304757
ARMVRRTA	8	Unmodified	_ARMVRRTA_					0	0	0			REV__LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	REV__LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7896423339844	2	480.779628	959.544702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.574	1	16.574	16.074	17.074	0								0	0	0	0.37183	1	1368	1368		4.756	1.8668	1		+		1963	13905	1058	1058	2447	2447					0.06331177962249512
ARNFHIRLV	9	Unmodified	_ARNFHIRLV_					0	0	0			REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8018188476562	2	563.335624	1124.6567	0.2306	0.0001299	-0.1828	-0.00010298	0.047798	2.6926E-05	563.3355429880258	25.017	0.90855	24.961	24.486	25.395	-0.055931					61	31	3	0	0	0	0.25938	1	3823	3823		4.3292	0	1	266140	+		1964	15171	1059	1059	2448	2448					0.0993535531085854
ARPALPAARAA	11	Unmodified	_ARPALPAARAA_					0	0	0		ENST00000447274.6_1_11:67056665-67056920:+|nuORF	ENST00000447274.6_1_11:67056665-67056920:+|nuORF	ENST00000447274.6_1_11:67056665-67056920:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.8198852539062	2	532.819807	1063.62506	0.079101	4.2147E-05	0.10331	5.5048E-05	0.18242	9.7195E-05	532.8198055937419	25.489	0.7723	25.433	25.023	25.796	-0.055931					77	26	4	0	0	0	0.42346	1	4146	4146		8.1555	0	1	1114600			1965	10604	1060	1060	2449	2449					0.09579362556928572
ARPAQLRRRAS	11	Unmodified	_ARPAQLRRRAS_					0	0	0		ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.883056640625	2	641.384168	1280.75378	0.61802	0.00039639	-1.029	-0.00065996	-0.41094	-0.00026357	641.384807268107	93.247	1.8269	93.247	92.734	94.561	-0.00051117					305	153	3	0	0	0	0.46655	1	25018	25018		2.4985	0.84587	1	573760			1966	5534	1061	1061	2450	2450					0.12463717519881357
ARPDEKAI	8	Unmodified	_ARPDEKAI_					0	0	0		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;nc|ENSG00000072110|P12814-2|ACTN1	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.25115966796875	2	450.250892	898.48723	0.12814	5.7696E-05	0.12955	5.8331E-05	0.25769	0.00011603	450.2510895026185	23.96	0.56144	23.887	23.672	24.234	-0.072559					29	18	2	0	0	0	0.33441	1	3622	3622		26.884	1.4843	1	105600			1967	7;970	1062	1062	2451	2451					0.03392614237657199
ARPDEKAI	8	Unmodified	_ARPDEKAI_					0	0	0		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;nc|ENSG00000072110|P12814-2|ACTN1	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	450.250892	898.48723	0.071785	3.2321E-05	0.44168	0.00019887	0.51347	0.00023119	450.25122646248866	23.877	0.51771	23.877	23.616	24.134	0	-0.028302	0.00020163	NaN	26.884	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106490			1968	7;970	1062	1062							0.03392614237657199
ARPDEKAI	8	Unmodified	_ARPDEKAI_					0	0	0		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;nc|ENSG00000072110|P12814-2|ACTN1	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	450.250892	898.48723	0.26791	0.00012063	0.08015	3.6088E-05	0.34806	0.00015671	450.2510445182547	23.991	0.43069	23.952	23.765	24.196	-0.038927	0.046397	-0.00012394	NaN	26.884	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125420			1969	7;970	1062	1062							0.03392614237657199
ARPGLGPRQL	10	Unmodified	_ARPGLGPRQL_					0	0	0		nc|ENSG00000187013|Q86X59|LINC02875	nc|ENSG00000187013|Q86X59|LINC02875	nc|ENSG00000187013|Q86X59|LINC02875	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.8200073242188	2	532.819807	1063.62506	0.37625	0.00020047	-0.22212	-0.00011835	0.15413	8.2125E-05	532.8196012790571	25.437	0.73491	25.437	25.064	25.798	0					77	24	4	0	0	0	0.38773	1	4152	4152		5.7319	0.83484	1	1082100			1970	12885	1063	1063	2452	2452					0.09579362556928572
ARPGPQSL	8	Unmodified	_ARPGPQSL_					0	0	0			REV__ENST00000506770.5_1_4:3949467-3952929:-|nuORF	REV__ENST00000506770.5_1_4:3949467-3952929:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.5502014160156	2	413.232502	824.450451	-0.18959	-7.8344E-05	0.017959	7.4211E-06	-0.17163	-7.0923E-05	413.23257547913124	22.401	0.57673	22.401	22.16	22.736	0					30	19	2	0	0	0	0.3366	1	3119	3119		18.135	3.5533	1	56941	+		1971	21754	1064	1064	2453	2453					0.031203624117438267
ARPPLLRLL	9	Unmodified	_ARPPLLRLL_					0	0	0			REV__ENSG00000160951|ENST00000292513|PTGER1	REV__ENSG00000160951|ENST00000292513|PTGER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2901611328125	2	524.853119	1047.69168	0.82787	0.00043451	-0.64587	-0.00033899	0.182	9.5522E-05	524.8527600414673	50.4	0.62759	50.4	50.138	50.766	0					51	22	3	0	0	0	0.25526	1	11637	11637		7.9102	0	1	1114600	+		1972	16925	1065	1065	2454	2454					0.1697459811882709
ARPPLLRLL	9	Unmodified	_ARPPLLRLL_					0	0	0			REV__ENSG00000160951|ENST00000292513|PTGER1	REV__ENSG00000160951|ENST00000292513|PTGER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2896728515625	2	524.853119	1047.69168	1.1708	0.00061449	-0.92107	-0.00048343	0.2497	0.00013106	524.8524956573245	50.416	0.69389	50.437	50.152	50.846	0.020691					58	25	3	0	0	0	0.25938	1	11634	11634		4.3292	0	1	902160	+		1973	16925	1065	1065	2455	2455					0.1697459811882709
ARPPPSSSP	9	Unmodified	_ARPPPSSSP_					0	0	0		ENST00000252934.9_1_22:46067795-46085660:+|nuORF	ENST00000252934.9_1_22:46067795-46085660:+|nuORF	ENST00000252934.9_1_22:46067795-46085660:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2349853515625	2	448.235242	894.45593	0.047937	2.1487E-05	-0.46118	-0.00020672	-0.41324	-0.00018523	448.2350047225645	18.783	1.3342	18.783	17.96	19.294	0					115	46	4	0	0	0	0.14786	1	2068	2068		31.268	0	1	341650			1974	8912	1066	1066	2456	2456					0.004480412035718473
ARPPTVIL	8	Unmodified	_ARPPTVIL_					0	0	0		ENSG00000061656|ENST00000374273|SPAG4	ENSG00000061656|ENST00000374273|SPAG4	ENSG00000061656|ENST00000374273|SPAG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.7763977050781	2	433.776545	865.538538	-0.13454	-5.8359E-05	-0.85414	-0.0003705	-0.98867	-0.00042886	433.77651858626797	43.591	0.83443	43.591	43.281	44.115	0					55	30	2	0	0	0	0.22	1	9615	9615		39.957	1.8061	1	1722100			1975	759	1067	1067	2457	2457					0.10038983002368695
ARPQPTLC	8	Unmodified	_ARPQPTLC_					0	0	0			REV__nc|ENSG00000146278|Q12796-2|PNRC1	REV__nc|ENSG00000146278|Q12796-2|PNRC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7510681152344	2	443.234187	884.453822	0.063373	2.8089E-05	0.30054	0.00013321	0.36392	0.0001613	443.2344529014461	19.448	0.8641	19.448	19.095	19.96	0					49	30	2	0	0	0	0.34247	1	2222	2222		4.756	0	1	86408	+		1976	16341	1068	1068	2458	2458					0.00697289194113182
ARPTYATAMLQ	11	Unmodified	_ARPTYATAMLQ_					0	0	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.8363037109375	2	611.816073	1221.61759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.294	1	25.263	24.763	25.763	-0.031408								0	0	0	0.36982	1	4007	4007		3.8763	0.27984	1				1977	7883	1069	1069	2459	2459					0.015648421743435392
ARPYDDLGSPL	11	Unmodified	_ARPYDDLGSPL_					0	0	0			REV__ENSG00000115275|ENST00000448666|MOGS	REV__ENSG00000115275|ENST00000448666|MOGS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.3032836914062	2	602.303852	1202.59315	0.35877	0.00021609	-0.51161	-0.00030815	-0.15284	-9.2056E-05	602.3033264100836	23.413	0.74649	23.325	22.967	23.713	-0.087608					58	26	3	0	0	0	0.44828	1	3419	3419		4.897	0.141	1	245790	+		1978	14871	1070	1070	2460	2460					-4.0947075376607245E-05
ARQRRASLS	9	Unmodified	_ARQRRASLS_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2863159179688	2	522.804688	1043.59482	0.49993	0.00026137	0.50556	0.00026431	1.0055	0.00052568	523.3058798918433	30.263	0.47676	30.291	30.103	30.58	0.027948					38	16	3	0	0	0	0.24289	1	5535	5535		18.146	1.0335	1	209320			1979	2031	1071	1071	2461	2461					0.07477003891767708
ARRLKLSP	8	Unmodified	_ARRLKLSP_					0	0	0		nc|ENSG00000005238|Q7L5A3-3|ATOSB;nc|ENSG00000005238|Q7L5A3-2|ATOSB;ENSG00000005238|ENST00000322813|ATOSB	nc|ENSG00000005238|Q7L5A3-3|ATOSB	nc|ENSG00000005238|Q7L5A3-3|ATOSB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2198181152344	2	470.806168	939.597784	0.059424	2.7977E-05	-0.54622	-0.00025717	-0.4868	-0.00022919	470.805905283343	19.143	0.52046	19.087	18.903	19.423	-0.055693					23	17	2	0	0	0	0.34272	1	2192	2192		7.9102	0	1	59386			1980	329	1072	1072	2462	2462					0.12556879016551648
ARRPKASSF	9	Unmodified	_ARRPKASSF_					0	0	0		ENST00000562621.1_1_15:73048204-73048867:-|nuORF	ENST00000562621.1_1_15:73048204-73048867:-|nuORF	ENST00000562621.1_1_15:73048204-73048867:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7877197265625	2	510.290882	1018.56721	0.13917	7.1019E-05	-3.9885	-0.0020353	-3.8494	-0.0019643	510.2886952277159	23.551	0.86709	23.478	22.924	23.791	-0.072559					49	30	2	0	0	0	0.24913	1	3497	3497		12.532	3.9383	1	187630			1981	11926	1073	1073	2463	2463					0.05867100631519406
ARRPRRREAA	10	Unmodified	_ARRPRRREAA_					0	0	0		ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8692016601562	2	619.868686	1237.72282	-0.10272	-6.3672E-05	0.83512	0.00051767	0.73241	0.000454	619.8694500330187	100.46	0.23928	100.5	100.39	100.63	0.039001					48	32	2	0	0	0	0.41085	1	26843	26843		1.4819	0	1	113430			1982	1532	1074	1074	2464	2464					0.1134656420565534
ARRPRRREAA	10	Unmodified	_ARRPRRREAA_					0	0	0		ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8693237304688	2	619.868686	1237.72282	0.15077	9.3455E-05	0.82793	0.00051321	0.9787	0.00060666	619.869235279191	101.85	0.21172	101.84	101.7	101.91	-0.0054779					43	29	2	0	0	0	0.41085	2	27152	27152;27185		1.4819	0	1	136750			1983	1532	1074	1074	2465;2466	2465					0.1134656420565534
ARRQLSPRRL	10	Unmodified	_ARRQLSPRRL_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.8899536132812	2	626.889087	1251.76362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.37	1	104.37	103.87	104.87	0								0	0	0	0.38166	1	27708	27708		1.4819	0	1		+		1984	14078	1075	1075	2467	2467					0.14780905525276467
ARRQRRRGGPG	11	Unmodified	_ARRQRRRGGPG_					0	0	0		ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8720092773438	2	633.87176	1265.72897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.97	1	114.99	114.49	115.49	0.018738								0	0	0	0.38126	1	29885	29885		1.1933	0	1				1985	10487	1076	1076	2468	2468					0.10673082437165249
ARRRDRRVGP	10	Unmodified	_ARRRDRRVGP_					0	0	0			REV__ENST00000521006.5_1_10:102729594-102732333:+|nuORF	REV__ENST00000521006.5_1_10:102729594-102732333:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8685913085938	2	619.868686	1237.72282	-0.037362	-2.316E-05	2.103	0.0013036	2.0656	0.0012804	619.8693202261267	96.923	0.42683	96.993	96.715	97.142	0.070465					65	40	2	0	0	0	0.40992	2	25875	25875;25961		1.6526	0.32309	1	143400	+		1986	21894	1077	1077	2469;2470	2469					0.11346564205632603
ARRWPKKERA	10	Unmodified	_ARRWPKKERA_					0	0	0			REV__ENST00000429154.6_1_19:44507217-44511222:+|nuORF	REV__ENST00000429154.6_1_19:44507217-44511222:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.3833618164062	2	649.383637	1296.75272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.722	1	83.705	83.205	84.205	-0.016823								0	0	0	0.38166	1	21901	21901		1.4819	0	1		+		1987	20925	1078	1078	2471	2471					0.11621503150968238
ARTPPIINA	9	Unmodified	_ARTPPIINA_					0	0	0		ENST00000534945.2_1_12:125834026-126068624:+|nuORF;nc|ENSG00000139364|Q14DG7-2|TMEM132B;nc|ENSG00000139364|Q14DG7|TMEM132B;ENSG00000139364|ENST00000682704|TMEM132B	ENST00000534945.2_1_12:125834026-126068624:+|nuORF	ENST00000534945.2_1_12:125834026-126068624:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7733459472656	2	476.782359	951.550165	-0.52329	-0.0002495	0.37705	0.00017977	-0.14624	-6.9722E-05	476.78247801760114	34.431	0.369	34.431	34.277	34.646	0					18	12	2	0	0	0	0.24467	1	6783	6783		17.113	0	1	99673			1988	4232	1079	1079	2472	2472					0.07245180025711306
ARVDPKALVKE	11	Unmodified	_ARVDPKALVKE_					0	0	0		ENSG00000070915|ENST00000563236|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.3549194335938	2	613.366787	1224.71902	0.27174	0.00016668	-0.36407	-0.00022331	-0.092321	-5.6627E-05	613.3667385971746	30.585	0.94897	30.585	30.282	31.231	0					80	33	3	0	0	0	0.43149	1	5683	5683		7.1017	2.9122	1	580300			1989	946	1080	1080	2473	2473					0.11565036868569223
ARVKHGKA	8	Unmodified	_ARVKHGKA_					0	0	0		ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	ENSG00000168143|ENST00000306858|FAM83B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.77642822265625	2	433.769586	865.524619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.538	1	43.538	43.038	44.038	0								0	0	0	0.35251	1	9573	9573		13.508	4.1604	1				1990	6251	1081	1081	2474	2474					0.08647750293937406
ARVKRVLPID	10	Unmodified	_ARVKRVLPID_					0	0	0		ENSG00000141744|ENST00000269582|PNMT	ENSG00000141744|ENST00000269582|PNMT	ENSG00000141744|ENST00000269582|PNMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2874145507812	2	583.87204	1165.72953	0.31731	0.00018527	-0.77513	-0.00045258	-0.45782	-0.00026731	583.8717748878977	58.381	0.29739	58.472	58.314	58.612	0.091301					13	10	2	0	0	0	0.31889	1	14147	14147		6.2058	0.47393	1	113870			1991	4409	1082	1082	2475	2475					0.15329064313641538
ARVRTRRSRP	10	Unmodified	_ARVRTRRSRP_					0	0	0			REV__ENST00000257604.9_2_12:112563767-112563923:+|nuORF	REV__ENST00000257604.9_2_12:112563767-112563923:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.29388427734375	3	418.925316	1253.75412	-0.070864	-2.9687E-05	3.931	0.0016468	3.8601	0.0016171	418.9257042462083	91.794	0.98793	91.794	91.507	92.495	0					113	70	2	0	0	0	0.32054	1	24392	24392		1.5923	0.52082	1	401730	+		1992	19558	1083	1083	2476	2476					0.1373913723973601
ARVTPIKNLEV	11	Unmodified	_ARVTPIKNLEV_					0	0	0			REV__nc|ENSG00000124126|Q8TCU6-3|PREX1	REV__nc|ENSG00000124126|Q8TCU6-3|PREX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3723754882812	2	620.374612	1238.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.223	1	95.306	94.806	95.806	0.082779								0	0	0	0.37609	1	25428	25428		2.4985	1.0166	1		+		1993	15208	1084	1084	2477	2477					0.12485323385590164
ARVVHRQRR	9	Unmodified	_ARVVHRQRR_					0	0	0		ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3426513671875	2	589.360496	1176.70644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.408	1	97.403	96.903	97.903	-0.0055466								0	0	0	0.264	1	26078	26078		1.8442	0.36234	1				1994	9903	1085	1085	2478	2478					0.12515483039555875
ARWLQQAQHH	10	Unmodified	_ARWLQQAQHH_					0	0	0		ENST00000587813.1_1_17:74536630-74549297:+|nuORF;ENST00000591317.5_1_17:74542167-74549297:+|nuORF	ENST00000587813.1_1_17:74536630-74549297:+|nuORF	ENST00000587813.1_1_17:74536630-74549297:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.8302001953125	2	637.828695	1273.64284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.956	1	89.956	89.456	90.456	0.0003891								0	0	0	0.38126	1	23813	23813		1.6526	0.17072	1				1995	12136	1086	1086	2479	2479					0.016960778117891095
ARYLVYFQ	8	Unmodified	_ARYLVYFQ_					0	0	0		ENSG00000169972|ENST00000379031|PUSL1;ENST00000470520.5_1_1:1244011-1244481:+|nuORF	ENSG00000169972|ENST00000379031|PUSL1	ENSG00000169972|ENST00000379031|PUSL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.82177734375	2	530.284734	1058.55492	0.18512	9.8168E-05	-0.92777	-0.00049198	-0.74265	-0.00039382	530.2841984401034	15.9	0.76434	15.787	15.377	16.141	-0.11251					38	25	3	0	0	0	0.34408	1	1245	1245		2.3027	0.24298	1	90757			1996	6408	1087	1087	2480	2480					0.027980641684507646
ARYRCLGI	8	Unmodified	_ARYRCLGI_					0	0	0		ENST00000322347.10_1_15:75221458-75221509:-|nuORF	ENST00000322347.10_1_15:75221458-75221509:-|nuORF	ENST00000322347.10_1_15:75221458-75221509:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.2632141113281	2	476.263279	950.512005	0.35601	0.00016955	-0.13835	-6.5892E-05	0.21766	0.00010366	476.2629603559524	86.064	0.71303	86.148	85.914	86.627	0.084251					72	27	3	0	0	0	0.42758	1	22679	22679		13.508	0	1	424560			1997	9391	1088	1088	2481	2481					0.03476970839392379
ARYVFSNF	8	Unmodified	_ARYVFSNF_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;ENST00000497886.5_1_16:2128976-2136835:+|nuORF;ENST00000561695.1_1_16:2128976-2129273:+|nuORF	nc|ENSG00000103197|P49815-4|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2539367675781	2	502.253434	1002.49232	0.30383	0.0001526	0.46179	0.00023193	0.76561	0.00038453	502.2535590458037	52.136	0.54813	52.136	51.86	52.408	0					46	19	3	0	0	0	0.040925	1	12209	12209		82.529	59.381	1	1152300			1998	1817	1089	1089	2482	2482					-0.008830818997239476
ARYVFSNF	8	Unmodified	_ARYVFSNF_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;ENST00000497886.5_1_16:2128976-2136835:+|nuORF;ENST00000561695.1_1_16:2128976-2129273:+|nuORF	nc|ENSG00000103197|P49815-4|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.25372314453125	2	502.253434	1002.49232	0.36121	0.00018142	0.46462	0.00023336	0.82583	0.00041477	502.25358095472234	52.068	0.64818	52.119	51.817	52.465	0.050575					49	23	3	0	0	0	0.040925	2	12175	12175;12224		82.529	63.09	1	1066800			1999	1817	1089	1089	2483;2484	2483					-0.008830818997239476
ARYVFSNF	8	Unmodified	_ARYVFSNF_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;ENST00000497886.5_1_16:2128976-2136835:+|nuORF;ENST00000561695.1_1_16:2128976-2129273:+|nuORF	nc|ENSG00000103197|P49815-4|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.253662109375	2	502.253434	1002.49232	0.16749	8.4123E-05	0.54592	0.00027419	0.71341	0.00035832	502.25359637244503	52.273	0.68303	52.272	52.034	52.717	-0.00081253					60	24	4	0	0	0	0.026963	2	12261	12261;12315		92.653	69.505	1	870010			2000	1817	1089	1089	2485;2486	2485					-0.008830818997239476
ASAAAALVLK	10	Unmodified	_ASAAAALVLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.78704833984375	2	457.78711	913.559667	0.17252	7.8979E-05	-0.050259	-2.3008E-05	0.12226	5.5971E-05	457.7869716591605	40.228	0.66565	40.228	39.996	40.662	0					52	23	3	0	0	0	0.0023511	1	8603	8603		107.1	63.241	1	639180			2001	4024	1090	1090	2487	2487					0.09942948311220334
ASAAAALVLK	10	Unmodified	_ASAAAALVLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7872009277344	2	457.78711	913.559667	0.36663	0.00016784	-0.37559	-0.00017194	-0.0089596	-4.1016E-06	457.7868882867956	40.12	0.64391	40.213	39.967	40.611	0.09267					50	22	3	0	0	0	3.2337E-05	1	8559	8559		136.39	74.79	1	834830			2002	4024	1090	1090	2488	2488					0.09942948311220334
ASAAAALVLK	10	Unmodified	_ASAAAALVLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.78704833984375	2	457.78711	913.559667	0.26289	0.00012035	-0.17368	-7.9508E-05	0.089208	4.0838E-05	457.7868967285591	40.058	0.53022	40.157	39.949	40.479	0.099407					47	18	3	0	0	0	3.2337E-05	1	8524	8524		148.27	86.666	1	880560			2003	4024	1090	1090	2489	2489					0.09942948311220334
ASAEAGSQSNP	11	Unmodified	_ASAEAGSQSNP_					0	0	0			REV__ENST00000449737.5_1_10:72977106-72977358:-|nuORF	REV__ENST00000449737.5_1_10:72977106-72977358:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.726318359375	2	509.725435	1017.43632	0.29299	0.00014935	1.9916	0.0010151	2.2846	0.0011645	509.7263918592532	22.047	0.78753	21.947	21.471	22.259	-0.10034					52	28	2	0	0	0	0.46969	1	3060	3060		2.086	0.24177	1	143790	+		2004	21107	1091	1091	2490	2490					-0.07170379597846477
ASALGSSSYKK	11	Unmodified	_ASALGSSSYKK_					0	0	0		RBM19|p.E743Rfs*72|1|0.2|ENSG00000122965|chr12:113927071-113927072|-/T|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19	RBM19|p.E743Rfs*72|1|0.2|ENSG00000122965|chr12:113927071-113927072|-/T|frameshift_variant	RBM19|p.E743Rfs*72|1|0.2|ENSG00000122965|chr12:113927071-113927072|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2946166992188	2	549.793121	1097.57169	0.14799	8.1364E-05	0.013472	7.4067E-06	0.16146	8.8771E-05	549.7931762183154	15.483	0.39059	15.483	15.289	15.679	0					23	12	2	0	0	0	0.44443	1	1054	1054		5.4027	1.2132	1	78315			2005	3080	1092	1092	2491	2491					0.02680520263766084
ASALGSSSYKK	11	Unmodified	_ASALGSSSYKK_					0	0	0		RBM19|p.E743Rfs*72|1|0.2|ENSG00000122965|chr12:113927071-113927072|-/T|frameshift_variant;ENSG00000122965|ENST00000261741|RBM19	RBM19|p.E743Rfs*72|1|0.2|ENSG00000122965|chr12:113927071-113927072|-/T|frameshift_variant	RBM19|p.E743Rfs*72|1|0.2|ENSG00000122965|chr12:113927071-113927072|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7933349609375	2	549.793121	1097.57169	0.2591	0.00014245	-0.2231	-0.00012266	0.036	1.9793E-05	549.7930190525561	15.614	0.44101	15.504	15.312	15.753	-0.10981					23	14	2	0	0	0	0.36569	1	1096	1096		15.739	2.6962	1	101590			2006	3080	1092	1092	2492	2492					0.02680520263766084
ASALPAPGK	9	Unmodified	_ASALPAPGK_					0	0	0		ENST00000585421.5_1_17:76851166-76851352:-|nuORF	ENST00000585421.5_1_17:76851166-76851352:-|nuORF	ENST00000585421.5_1_17:76851166-76851352:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.5870666503906	2	406.237253	810.459953	-0.1851	-7.5194E-05	0.32233	0.00013094	0.13723	5.5747E-05	406.2373109908831	19.791	0.67007	19.791	19.375	20.045	0					31	23	2	0	0	0	0.24311	1	2247	2247		16.942	2.3606	1	20450			2007	12104	1093	1093	2493	2493					0.047141306972775965
ASANLGGVPSK	11	Unmodified	_ASANLGGVPSK_					0	0	0		ENST00000485923.1_1_3:150321131-150321287:+|nuORF;ENST00000471696.5_2_3:150321089-150340178:+|nuORF;ENSG00000198843|ENST00000471696|SELENOT	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.79302978515625	2	500.774731	999.534909	0.21175	0.00010604	1.0008	0.00050117	1.2125	0.0006072	500.774874343732	26.119	1.0513	26.119	25.846	26.897	0					93	36	4	0	0	0	0.13318	1	4214	4214		74.094	45.599	1	1208500			2008	8140	1094	1094	2494	2494					0.03512268437862076
ASANLGGVPSK	11	Unmodified	_ASANLGGVPSK_					0	0	0		ENST00000485923.1_1_3:150321131-150321287:+|nuORF;ENST00000471696.5_2_3:150321089-150340178:+|nuORF;ENSG00000198843|ENST00000471696|SELENOT	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7750244140625	2	500.774731	999.534909	0.18177	9.1024E-05	1.323	0.00066255	1.5048	0.00075357	500.77486568836235	26.148	1.096	26.109	25.813	26.909	-0.038671					115	38	5	0	0	0	0.0024118	1	4231	4231		85.729	43.774	1	1302300			2009	8140	1094	1094	2495	2495					0.03512268437862076
ASANLGGVPSK	11	Unmodified	_ASANLGGVPSK_					0	0	0		ENST00000485923.1_1_3:150321131-150321287:+|nuORF;ENST00000471696.5_2_3:150321089-150340178:+|nuORF;ENSG00000198843|ENST00000471696|SELENOT	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7745666503906	2	500.774731	999.534909	0.32168	0.00016109	0.89171	0.00044654	1.2134	0.00060763	500.77478315285884	26.124	1.2855	26.102	25.774	27.059	-0.022238					99	45	4	0	0	0	0.011444	1	4217	4217		66.617	26.667	1	1310200			2010	8140	1094	1094	2496	2496					0.03512268437862076
ASAPGYLAITK	11	Unmodified	_ASAPGYLAITK_					0	0	0		nc|ENSG00000109472|P16870-2|CPE;ENSG00000109472|ENST00000402744|CPE	nc|ENSG00000109472|P16870-2|CPE	nc|ENSG00000109472|P16870-2|CPE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.3081665039062	2	546.308406	1090.60226	0.39681	0.00021678	-0.7072	-0.00038635	-0.31039	-0.00016957	546.3079252494388	42.821	0.61271	42.821	42.567	43.18	0					52	21	4	0	0	0	0.30475	1	9362	9362		21.799	8.757	1	507980			2011	2255	1095	1095	2497	2497					0.06058298648758864
ASAPGYLAITK	11	Unmodified	_ASAPGYLAITK_					0	0	0		nc|ENSG00000109472|P16870-2|CPE;ENSG00000109472|ENST00000402744|CPE	nc|ENSG00000109472|P16870-2|CPE	nc|ENSG00000109472|P16870-2|CPE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.7880249023438	2	546.308406	1090.60226	0.40562	0.00022159	-0.80229	-0.0004383	-0.39667	-0.0002167	546.3080762042468	42.626	0.46347	42.711	42.539	43.003	0.085197					38	16	3	0	0	0	0.24928	1	9312	9312		42.835	17.954	1	731570			2012	2255	1095	1095	2498	2498					0.06058298648758864
ASAPGYLAITK	11	Unmodified	_ASAPGYLAITK_					0	0	0		nc|ENSG00000109472|P16870-2|CPE;ENSG00000109472|ENST00000402744|CPE	nc|ENSG00000109472|P16870-2|CPE	nc|ENSG00000109472|P16870-2|CPE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7882080078125	2	546.308406	1090.60226	0.42427	0.00023178	-0.45855	-0.00025051	-0.034286	-1.8731E-05	546.3081558644558	42.592	0.54443	42.684	42.441	42.985	0.091362					45	19	3	0	0	0	0.28865	1	9269	9269		25.997	13.823	1	678030			2013	2255	1095	1095	2499	2499					0.06058298648758864
ASAPQALAP	9	Unmodified	_ASAPQALAP_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.8944396972656	2	413.226885	824.439217	0.41351	0.00017087	-1.7473	-0.00072205	-1.3338	-0.00055118	413.22580761896273	21.525	0.45632	21.425	21.101	21.557	-0.10034					21	15	2	0	0	0	0.25622	1	2843	2843		7.2892	0	1	29083	+		2014	23129	1096	1096	2500	2500					0.019975403176090367
ASAPVTVKR	9	Unmodified	_ASAPVTVKR_					0	0	0		nc|ENSG00000174579|Q9HCI7-2|MSL2;ENSG00000174579|ENST00000309993|MSL2	nc|ENSG00000174579|Q9HCI7-2|MSL2	nc|ENSG00000174579|Q9HCI7-2|MSL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7825622558594	2	464.782359	927.550165	-0.12971	-6.0287E-05	-0.037736	-1.7539E-05	-0.16745	-7.7826E-05	464.78225858045727	16.445	0.50704	16.445	16.242	16.749	0					27	17	2	0	0	0	0.32638	1	1336	1336		4.897	0.95262	1	53203			2015	6804	1097	1097	2501	2501					0.08349180025697933
ASAPVTVKR	9	Unmodified	_ASAPVTVKR_					0	0	0		nc|ENSG00000174579|Q9HCI7-2|MSL2;ENSG00000174579|ENST00000309993|MSL2	nc|ENSG00000174579|Q9HCI7-2|MSL2	nc|ENSG00000174579|Q9HCI7-2|MSL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.78216552734375	2	464.782359	927.550165	-0.19301	-8.971E-05	0.21414	9.9527E-05	0.021123	9.8176E-06	464.78236296367163	16.563	0.42011	16.448	16.247	16.667	-0.11434					25	14	2	0	0	0	0.32638	1	1384	1384		4.897	0.56777	1	75934			2016	6804	1097	1097	2502	2502					0.08349180025697933
ASAPVTVKR	9	Unmodified	_ASAPVTVKR_					0	0	0		nc|ENSG00000174579|Q9HCI7-2|MSL2;ENSG00000174579|ENST00000309993|MSL2	nc|ENSG00000174579|Q9HCI7-2|MSL2	nc|ENSG00000174579|Q9HCI7-2|MSL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7823486328125	2	464.782359	927.550165	0.15715	7.3042E-05	-0.064101	-2.9793E-05	0.093052	4.3249E-05	464.7822262755486	16.532	0.40789	16.47	16.266	16.674	-0.062534					28	13	3	0	0	0	0.32638	1	1372	1372		4.897	0.95262	1	65800			2017	6804	1097	1097	2503	2503					0.08349180025697933
ASASASLPTK	10	Unmodified	_ASASASLPTK_					0	0	0		ENST00000571989.1_1_17:80551586-80559372:+|nuORF;ENST00000473637.6_1_17:80553997-80559372:+|nuORF;ENST00000529652.1_1_17:80558017-80559372:+|nuORF;ENSG00000141568|ENST00000335255|FOXK2	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7558898925781	2	466.756007	931.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.725	1	22.725	22.225	23.225	0								0	0	0	0.2655	1	3232	3232		32.037	14.925	1				2018	4396	1098	1098	2504	2504					0.02897177172235388
ASASASLPTK	10	Unmodified	_ASASASLPTK_					0	0	0		ENST00000571989.1_1_17:80551586-80559372:+|nuORF;ENST00000473637.6_1_17:80553997-80559372:+|nuORF;ENST00000529652.1_1_17:80558017-80559372:+|nuORF;ENSG00000141568|ENST00000335255|FOXK2	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	ENST00000571989.1_1_17:80551586-80559372:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7558288574219	2	466.756007	931.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.76	1	22.715	22.215	23.215	-0.044867								0	0	0	0.0079346	1	3240	3240		73.196	29.424	1				2019	4396	1098	1098	2505	2505					0.02897177172235388
ASATIVDYLGF	11	Unmodified	_ASATIVDYLGF_					0	0	0		ENSG00000063438|ENST00000684583|AHRR;nc|ENSG00000063438|A9YTQ3|AHRR;nc|ENSG00000063438|A9YTQ3-3|AHRR;nc|ENSG00000063438|A9YTQ3-2|AHRR	ENSG00000063438|ENST00000684583|AHRR	ENSG00000063438|ENST00000684583|AHRR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.8037719726562	2	578.797872	1155.58119	0.2219	0.00012844	4.1146	0.0023815	4.3365	0.00251	578.8008313706384	51.848	0.81818	51.848	51.536	52.354	0					64	29	3	0	0	0	0.0071225	1	12119	12119		75.761	28.012	1	877150			2020	777	1099	1099	2506	2506					0.009622885492717614
ASATIVDYLGF	11	Unmodified	_ASATIVDYLGF_					0	0	0		ENSG00000063438|ENST00000684583|AHRR;nc|ENSG00000063438|A9YTQ3|AHRR;nc|ENSG00000063438|A9YTQ3-3|AHRR;nc|ENSG00000063438|A9YTQ3-2|AHRR	ENSG00000063438|ENST00000684583|AHRR	ENSG00000063438|ENST00000684583|AHRR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.8040161132812	2	578.797872	1155.58119	0.080776	4.6753E-05	2.2966	0.0013293	2.3774	0.001376	578.8003479071429	52.204	0.75926	52.203	51.736	52.495	-0.00080872					51	27	3	0	0	0	0.0039239	3	12174	12174;12213;12222		82.529	38.671	1	1244900			2021	777	1099	1099	2507;2508;2509	2507					0.009622885492717614
ASATKFKQLYR	11	Unmodified	_ASATKFKQLYR_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.25103759765625	3	438.250583	1311.72992	-0.15323	-6.7155E-05	-1.2656	-0.00055467	-1.4189	-0.00062182	438.2505264796481	26.123	0.78662	26.085	25.556	26.342	-0.038671					37	27	2	0	0	0	0.46704	1	4275	4275		2.4348	0.18206	1	229070			2022	1560	1100	1100	2510	2510					0.08652439242837318
ASAYSIAQK	9	Unmodified	_ASAYSIAQK_					0	0	0		nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.750732421875	2	469.750724	937.486896	-0.073867	-3.4699E-05	-0.60373	-0.0002836	-0.6776	-0.0003183	469.75090374714676	23.851	0.60355	23.851	23.616	24.22	0					53	20	5	0	0	0	0.026579	1	3565	3565		61.602	13.853	1	197140			2023	5621	1101	1101	2511	2511					0.01565194517809232
ASAYSIAQK	9	Unmodified	_ASAYSIAQK_					0	0	0		nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7508850097656	2	469.750724	937.486896	0.07471	3.5095E-05	0.35302	0.00016583	0.42773	0.00020093	469.75073683245097	23.979	0.67861	23.906	23.588	24.267	-0.072559					43	22	3	0	0	0	0.01909	1	3621	3621		65.474	17.725	1	158670			2024	5621	1101	1101	2512	2512					0.01565194517809232
ASAYSIAQK	9	Unmodified	_ASAYSIAQK_					0	0	0		nc|ENSG00000162813|O95861-4|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	nc|ENSG00000162813|O95861-4|BPNT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7507629394531	2	469.750724	937.486896	0.27344	0.00012845	-0.0031681	-1.4882E-06	0.27028	0.00012696	469.7506155054576	23.972	0.59723	23.933	23.681	24.278	-0.038927					46	20	3	0	0	0	0.0054984	1	3609	3609		86.332	21.097	1	192830			2025	5621	1101	1101	2513	2513					0.01565194517809232
ASCLLTSPQPW	11	Unmodified	_ASCLLTSPQPW_					0	0	0		ENST00000336219.3_1_14:105477261-105477489:-|nuORF	ENST00000336219.3_1_14:105477261-105477489:-|nuORF	ENST00000336219.3_1_14:105477261-105477489:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.2975463867188	2	601.797349	1201.58014	0.13586	8.176E-05	-0.42458	-0.00025551	-0.28872	-0.00017375	601.7969874493087	59.935	0.66545	59.935	59.59	60.255	0					32	23	2	0	0	0	0.33175	1	14563	14563		4.897	0.95262	1	503990			2026	9485	1102	1102	2514	2514					-0.0125824909127914
ASCLLTSPQPW	11	Unmodified	_ASCLLTSPQPW_					0	0	0		ENST00000336219.3_1_14:105477261-105477489:-|nuORF	ENST00000336219.3_1_14:105477261-105477489:-|nuORF	ENST00000336219.3_1_14:105477261-105477489:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	601.797349	1201.58014	0.020884	1.2568E-05	-0.36727	-0.00022102	-0.34638	-0.00020845	601.797007197967	59.93	0.61021	60.025	59.521	60.131	0.095093	0.044918	4.2192E-05	NaN	4.897	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350720			2027	9485	1102	1102							-0.0125824909127914
ASCRAAEW	8	Unmodified	_ASCRAAEW_					0	0	0			REV__ENST00000567020.6_2_16:2552545-2553103:+|nuORF	REV__ENST00000567020.6_2_16:2552545-2553103:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.7479553222656	2	447.200344	892.386136	0.20138	9.0058E-05	-0.69523	-0.00031091	-0.49385	-0.00022085	447.1998410055386	61.117	0.30407	61.108	60.992	61.296	-0.0094566					12	10	2	0	0	0	0.34218	1	15036	15036		5.2307	0	1	819290	+		2028	22376	1103	1103	2515	2515					-0.06436160736711827
ASCSIFQEL	9	Unmodified	_ASCSIFQEL_					0	0	0		ENST00000490941.1_1_3:170671587-170671683:-|nuORF	ENST00000490941.1_1_3:170671587-170671683:-|nuORF	ENST00000490941.1_1_3:170671587-170671683:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7813720703125	2	499.236593	996.458632	0.24054	0.00012008	-0.47101	-0.00023514	-0.23047	-0.00011506	499.2369739456877	26.413	0.51053	26.374	26.153	26.664	-0.038671					26	17	3	0	0	0	0.17611	1	4432	4432		34.102	0	1	78389			2029	11169	1104	1104	2516	2516					-0.0397387145378616
ASDPNVSKKLK	11	Unmodified	_ASDPNVSKKLK_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8432006835938	2	593.843145	1185.67174	0.13279	7.8854E-05	0.15598	9.2625E-05	0.28876	0.00017148	593.8431754420537	14.261	0.4778	14.261	14.113	14.591	0					36	16	3	0	0	0	0.40826	1	696	696		10.151	2.5416	1	215350			2030	4964	1105	1105	2517	2517					0.08632757597570162
ASDPNVSKKLK	11	Unmodified	_ASDPNVSKKLK_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	593.843145	1185.67174	0.13983	8.3039E-05	0.19396	0.00011518	0.33379	0.00019822	593.8432218271718	14.372	0.57644	14.268	14.105	14.681	-0.10466	-0.015885	3.8352E-05	NaN	10.151	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201720			2031	4964	1105	1105							0.08632757597570162
ASDPNVSKKLK	11	Unmodified	_ASDPNVSKKLK_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	593.843145	1185.67174	0.067727	4.0219E-05	0.14117	8.3834E-05	0.2089	0.00012405	593.8432579197993	14.389	0.5205	14.323	14.152	14.672	-0.066068	0.038867	-2.4345E-05	NaN	10.151	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144730			2032	4964	1105	1105							0.08632757597570162
ASDTDKDFTSF	11	Unmodified	_ASDTDKDFTSF_					0	0	0			REV__nc|ENSG00000041982|P24821-6|TNC	REV__nc|ENSG00000041982|P24821-6|TNC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.22705078125	3	411.847181	1232.51971	0.25226	0.00010389	-2.3286	-0.00095903	-2.0763	-0.00085514	411.8462270525474	23.826	0.14043	23.787	23.737	23.878	-0.038927					6	4	2	0	0	0	0.32719	1	3580	3580		14.218	4.6742	1	14449	+		2033	13528	1106	1106	2518	2518					-0.08724687940662079
ASDTLTTL	8	Unmodified	_ASDTLTTL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.22747802734375	2	411.216183	820.417813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.019	1	23.98	23.48	24.48	-0.038927								0	0	0	0.33625	1	3622	3622		20.871	0	1				2034	1349	1107	1107	2519	2519					0.000421104982478937
ASEKCSCCD	9	Unmodified	_ASEKCSCCD_					0	0	0		ENSG00000198417|ENST00000334350|MT1F;ENST00000564295.1_1_16:56692857-56693073:+|nuORF	ENSG00000198417|ENST00000334350|MT1F	ENSG00000198417|ENST00000334350|MT1F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7978820800781	2	473.15917	944.303788	-0.055526	-2.6273E-05	-0.097862	-4.6304E-05	-0.15339	-7.2577E-05	473.1590158628651	25.416	0.57486	25.361	25.102	25.677	-0.055931					24	19	2	0	0	0	0.25988	1	4095	4095		3.9444	3.1508	1	36583			2035	8072	1108	1108	2520	2520					-0.1705918692217665
ASEPEVCIKTF	11	Unmodified	_ASEPEVCIKTF_					0	0	0		ENST00000526666.1_1_1:66458589-66514535:+|nuORF;ENST00000532040.1_1_1:66458589-66528634:+|nuORF;nc|ENSG00000184588|Q07343-3|PDE4B	ENST00000526666.1_1_1:66458589-66514535:+|nuORF	ENST00000526666.1_1_1:66458589-66514535:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.53753662109375	3	408.537401	1222.59037	-0.38644	-0.00015788	0.47598	0.00019445	0.089537	3.6579E-05	408.537695202621	38.66	0.92056	38.66	38.269	39.189	0					98	32	4	0	0	0	0.39802	1	8147	8147		6.2344	0.36622	1	1354800			2036	11560	1109	1109	2521	2521					-0.012016861566962689
ASERHLQITR	10	Unmodified	_ASERHLQITR_					0	0	0			REV__ENSG00000198108|ENST00000305031|CHSY3	REV__ENSG00000198108|ENST00000305031|CHSY3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.2425231933594	3	404.226549	1209.65782	-0.27304	-0.00011037	4.1776	0.0016887	3.9046	0.0015783	404.22805840935524	18.73	0.20038	18.73	18.614	18.814	0					10	6	2	0	0	0	0.40854	1	2039	2039		1.9064	0.45126	1	14281	+		2037	18800	1110	1110	2522	2522					0.0613752488911814
ASEVLKHLK	9	Unmodified	_ASEVLKHLK_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000534976.5_1_12:121756302-121773353:-|nuORF;ENST00000545218.5_1_12:121756099-121775126:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2830200195312	2	512.811116	1023.60768	-0.092241	-4.7302E-05	0.80501	0.00041282	0.71276	0.00036551	512.8113167182788	18.82	0.41621	18.762	18.57	18.986	-0.058172					24	14	2	0	0	0	0.25988	1	2073	2073		3.9444	1.6417	1	72075			2038	1343	1111	1111	2523	2523					0.09682022231277188
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.29876708984375	2	504.297842	1006.58113	0.25834	0.00013028	-0.18633	-9.3967E-05	0.072005	3.6312E-05	504.29854628006643	16.762	2.3531	16.762	16.461	18.814	0					242	81	6	0	0	0	0.00054549	5	1454	1366;1408;1454;1498;1539		128.57	62.335	1	33110000		+	2039	567	1112	1112	2524;2525;2526;2527;2528	2526					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2988586425781	2	504.297842	1006.58113	0.11137	5.6161E-05	-0.023796	-1.2E-05	0.087569	4.4161E-05	504.2986171156706	16.873	2.26	16.759	16.421	18.681	-0.11434					252	79	5	0	0	0	0.00054549	5	1456	1408;1456;1497;1549;1588		128.57	64.612	1	29610000		+	2040	567	1112	1112	2529;2530;2531;2532;2533	2530					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.29876708984375	2	504.297842	1006.58113	0.35268	0.00017786	-0.25952	-0.00013087	0.093165	4.6983E-05	504.29853715279916	16.806	2.3419	16.743	16.442	18.784	-0.062534					257	83	5	0	0	0	0.00054549	6	1431	1431;1476;1494;1526;1576;1621		128.57	55.29	1	29834000		+	2041	567	1112	1112	2534;2535;2536;2537;2538;2539	2534					0.07810333339944009
ASFDKAKLKK	10	Unmodified	_ASFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.3450927734375	2	568.345323	1134.67609	-0.051855	-2.9472E-05	0.055176	3.1359E-05	0.003321	1.8875E-06	568.3453584383024	14.598	0.47654	14.598	14.423	14.9	0					44	16	4	0	0	0	0.058704	2	761	761;814		57.108	35.571	1	376440		+	2042	567	1113	1113	2540;2541	2540					0.11414266811129892
ASFDKAKLKK	10	Unmodified	_ASFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.3452758789062	2	568.345323	1134.67609	0.10362	5.889E-05	-0.016607	-9.4386E-06	0.08701	4.9452E-05	568.3452681018221	14.724	0.48808	14.619	14.422	14.91	-0.10466					45	16	4	0	0	0	0.041387	1	803	803		60.899	39.362	1	365320		+	2043	567	1113	1113	2542	2542					0.11414266811129892
ASFDKAKLKK	10	Unmodified	_ASFDKAKLKK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.3453369140625	2	568.345323	1134.67609	-0.059785	-3.3978E-05	-0.00042335	-2.4061E-07	-0.060208	-3.4219E-05	568.3453002552911	14.743	0.52858	14.677	14.483	15.012	-0.066068					47	18	4	0	0	0	0.13068	1	806	806		41.347	25.198	1	330230		+	2044	567	1113	1113	2543	2543					0.11414266811129892
ASFDRAIEM	9	Oxidation (M)	_ASFDRAIEM(Oxidation (M))_		ASFDRAIEM(1)		ASFDRAIEM(69)	0	0	1		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2451782226562	2	528.244949	1054.47534	-0.32729	-0.00017289	0.56417	0.00029802	0.23688	0.00012513	528.2453439728991	34.474	0.55737	34.474	34.247	34.805	0					49	19	4	0	0	0	0.016571	2	6824	6777;6824		69.338	17.708	1	526280			2045	1493	1114	1114	2544;2545	2545		185			-0.049713705678414044
ASFDRAIEM	9	Oxidation (M)	_ASFDRAIEM(Oxidation (M))_		ASFDRAIEM(1)		ASFDRAIEM(73)	0	0	1		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2449951171875	2	528.244949	1054.47534	-0.51258	-0.00027077	0.49445	0.00026119	-0.018126	-9.575E-06	528.2451730388839	34.429	0.6293	34.504	34.185	34.814	0.075306					62	22	5	0	0	0	0.014058	1	6820	6820		73.196	21.566	1	576800			2046	1493	1114	1114	2546	2546		185			-0.049713705678414044
ASFDRAIEM	9	Oxidation (M)	_ASFDRAIEM(Oxidation (M))_		ASFDRAIEM(1)		ASFDRAIEM(67)	0	0	1		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2451171875	2	528.244949	1054.47534	0.085387	4.5105E-05	-0.0054894	-2.8998E-06	0.079898	4.2206E-05	528.244863308032	34.404	0.67282	34.482	34.164	34.837	0.077377					55	23	3	0	0	0	0.018042	1	6790	6790		67.081	15.451	1	598070			2047	1493	1114	1114	2547	2547		185			-0.049713705678414044
ASFENVRAK	9	Unmodified	_ASFENVRAK_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.27490234375	2	511.274898	1020.53524	0.11189	5.7205E-05	0.27531	0.00014076	0.3872	0.00019797	511.27499824090114	19.188	0.81599	19.188	18.923	19.739	0					52	28	2	0	0	0	0.0054984	2	2141	2141;2189		86.332	48.358	1	364130			2048	3957	1115	1115	2548;2549	2548					0.0257968815770937
ASFENVRAK	9	Unmodified	_ASFENVRAK_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.27496337890625	2	511.274898	1020.53524	0.1662	8.4974E-05	-0.050704	-2.5924E-05	0.1155	5.9051E-05	511.27476795698396	19.377	0.6648	19.261	19.005	19.67	-0.11592					59	22	4	0	0	0	0.026579	2	2231	2186;2231		61.602	35.334	1	358380			2049	3957	1115	1115	2550;2551	2551					0.0257968815770937
ASFENVRAK	9	Unmodified	_ASFENVRAK_					0	0	0		ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	ENST00000488373.5_1_7:6415539-6442074:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.27508544921875	2	511.274898	1020.53524	0.15199	7.7707E-05	0.050601	2.5871E-05	0.20259	0.00010358	511.2747733274159	19.311	0.71571	19.255	18.989	19.705	-0.055693					67	24	4	0	0	0	0.015924	2	2177	2177;2228		70.332	41.25	1	401320			2050	3957	1115	1115	2552;2553	2552					0.0257968815770937
ASFFKIAFS	9	Unmodified	_ASFFKIAFS_					0	0	0			REV__ENSG00000100665|ENST00000557004|SERPINA4	REV__ENSG00000100665|ENST00000557004|SERPINA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7878112792969	2	509.273835	1016.53312	0.56517	0.00028783	-2.0358	-0.0010368	-1.4706	-0.00074893	509.2717462164073	53.919	0.46412	53.919	53.698	54.162	0					25	16	3	0	0	0	0.11461	1	12776	12776		36.127	9.2434	1	176940	+		2051	14222	1116	1116	2554	2554					0.025512594198971783
ASFFKIAFS	9	Unmodified	_ASFFKIAFS_					0	0	0			REV__ENSG00000100665|ENST00000557004|SERPINA4	REV__ENSG00000100665|ENST00000557004|SERPINA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7878112792969	2	509.273835	1016.53312	0.41015	0.00020888	-3.4459	-0.0017549	-3.0358	-0.001546	509.27181243103587	54.099	0.38851	54.083	53.809	54.197	-0.015923					21	13	2	0	0	0	0.13748	1	12826	12826		32.786	8.7651	1	193340	+		2052	14222	1116	1116	2555	2555					0.025512594198971783
ASFFKIAFS	9	Unmodified	_ASFFKIAFS_					0	0	0			REV__ENSG00000100665|ENST00000557004|SERPINA4	REV__ENSG00000100665|ENST00000557004|SERPINA4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	509.273835	1016.53312	0.41015	0.00020888	-3.4459	-0.0017549	-3.0358	-0.001546	509.27181243103587	54.099	0.38851	54.083	53.809	54.197	-0.015923	0.11325	-0.00033152	NaN	36.127	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193340	+		2053	14222	1116	1116							0.025512594198971783
ASFKSFLK	8	Unmodified	_ASFKSFLK_					0	0	0		nc|ENSG00000143248|O15539-3|RGS5;ENSG00000143248|ENST00000313961|RGS5	nc|ENSG00000143248|O15539-3|RGS5	nc|ENSG00000143248|O15539-3|RGS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.26873779296875	2	464.268553	926.522553	0.1465	6.8015E-05	-0.40624	-0.0001886	-0.25974	-0.00012059	464.26816042391386	36.586	0.57119	36.674	36.435	37.006	0.08741					33	20	2	0	0	0	0.26398	1	7462	7462		34.932	10.911	1	258120			2054	4493	1117	1117	2556	2556					0.05635276765474373
ASFLFQCSLFF	11	Unmodified	_ASFLFQCSLFF_					0	0	0		ENST00000482777.5_1_12:111890539-111890719:-|nuORF	ENST00000482777.5_1_12:111890539-111890719:-|nuORF	ENST00000482777.5_1_12:111890539-111890719:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.8927001953125	3	437.21437	1308.62128	-0.0021991	-9.6149E-07	-0.18084	-7.9065E-05	-0.18304	-8.0027E-05	437.2142168442774	23.274	1.1944	23.23	22.709	23.903	-0.044867					95	42	4	0	0	0	0.3331	1	3297	3297		2.2527	2.2527	1	611460			2055	11049	1118	1118	2557	2557					-0.020684880518047066
ASFLVGVFFFG	11	Unmodified	_ASFLVGVFFFG_					0	0	0			REV__nc|ENSG00000211584|Q6P1K1-2|SLC48A1	REV__nc|ENSG00000211584|Q6P1K1-2|SLC48A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.81494140625	2	595.815867	1189.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.423	1	26.423	25.923	26.923	0								0	0	0	0.36137	1	4348	4348		5.7319	2.4505	1		+		2056	19025	1119	1119	2558	2558					0.029957905167975696
ASFLVGVFFFG	11	Unmodified	_ASFLVGVFFFG_					0	0	0			REV__nc|ENSG00000211584|Q6P1K1-2|SLC48A1	REV__nc|ENSG00000211584|Q6P1K1-2|SLC48A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.8143920898438	2	595.815867	1189.61718	0.36115	0.00021518	-0.94986	-0.00056594	-0.58871	-0.00035076	595.8148203709161	26.33	0.30786	26.291	26.153	26.461	-0.038671					17	10	2	0	0	0	0.41896	1	4350	4350		8.7454	3.4485	1	77835	+		2057	19025	1119	1119	2559	2559					0.029957905167975696
ASFNLNAINR	10	Unmodified	_ASFNLNAINR_					0	0	0		ENSG00000109107|ENST00000226253|ALDOC	ENSG00000109107|ENST00000226253|ALDOC	ENSG00000109107|ENST00000226253|ALDOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2987060546875	2	560.298904	1118.58326	0.42007	0.00023536	-0.2262	-0.00012674	0.19387	0.00010863	560.298801054731	46.75	0.62679	46.75	46.458	47.084	0					60	21	4	0	0	0	2.7564E-05	2	10545	10545;10596		139.78	93.908	1	2401000			2058	2236	1120	1120	2560;2561	2560					0.028707620777595366
ASFNLNAINR	10	Unmodified	_ASFNLNAINR_					0	0	0		ENSG00000109107|ENST00000226253|ALDOC	ENSG00000109107|ENST00000226253|ALDOC	ENSG00000109107|ENST00000226253|ALDOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.2990112304688	2	560.298904	1118.58326	0.5265	0.000295	-0.53213	-0.00029815	-0.005633	-3.1562E-06	560.2986012086253	46.603	0.59718	46.655	46.358	46.955	0.052574					61	21	4	0	0	0	9.2455E-14	2	10526	10482;10526		192.32	134.6	1	2233000			2059	2236	1120	1120	2562;2563	2563					0.028707620777595366
ASFNLNAINR	10	Unmodified	_ASFNLNAINR_					0	0	0		ENSG00000109107|ENST00000226253|ALDOC	ENSG00000109107|ENST00000226253|ALDOC	ENSG00000109107|ENST00000226253|ALDOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2988891601562	2	560.298904	1118.58326	0.22265	0.00012475	-0.04614	-2.5852E-05	0.17651	9.8899E-05	560.2988136947419	46.639	0.59779	46.694	46.44	47.037	0.054371					48	20	3	0	0	0	0.0012219	2	10497	10497;10558		117.84	68.283	1	2175600			2060	2236	1120	1120	2564;2565	2564					0.028707620777595366
ASFPKVFIK	9	Unmodified	_ASFPKVFIK_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.8133544921875	2	518.813128	1035.6117	0.64378	0.000334	-0.89833	-0.00046606	-0.25455	-0.00013206	518.8130562162868	44.836	0.62358	44.836	44.522	45.146	0					68	22	4	0	0	0	0.07944	1	9953	9953		41.956	16.556	1	908030			2061	2422	1121	1121	2566	2566					0.09532111724979586
ASFPKVFIK	9	Unmodified	_ASFPKVFIK_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.8134765625	2	518.813128	1035.6117	0.47507	0.00024647	-0.54648	-0.00028352	-0.071406	-3.7046E-05	518.8131016658988	44.691	0.65925	44.76	44.463	45.123	0.068569					68	23	4	0	0	0	0.07944	1	9918	9918		41.956	14.327	1	943370			2062	2422	1121	1121	2567	2567					0.09532111724979586
ASFPKVFIK	9	Unmodified	_ASFPKVFIK_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.8134155273438	2	518.813128	1035.6117	0.4876	0.00025297	-0.39019	-0.00020244	0.097404	5.0534E-05	518.8132036462532	44.659	0.6815	44.734	44.475	45.157	0.075047					65	24	4	0	0	0	0.064268	1	9904	9904		47.594	13.193	1	931590			2063	2422	1121	1121	2568	2568					0.09532111724979586
ASFPLLLTL	9	Unmodified	_ASFPLLLTL_					0	0	0		nc|ENSG00000211651|P01699|IGLV1-44	nc|ENSG00000211651|P01699|IGLV1-44	nc|ENSG00000211651|P01699|IGLV1-44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7997131347656	2	487.799686	973.584819	0.32114	0.00015665	-0.2566	-0.00012517	0.064535	3.148E-05	487.7994686484254	97.033	1.3696	97.027	96.492	97.861	-0.0055466					211	139	3	0	0	0	0.25202	1	25979	25979		10.824	3.5347	1	217520			2064	12921	1122	1122	2569	2569					0.09697003113808478
ASFPLLLTL	9	Unmodified	_ASFPLLLTL_					0	0	0		nc|ENSG00000211651|P01699|IGLV1-44	nc|ENSG00000211651|P01699|IGLV1-44	nc|ENSG00000211651|P01699|IGLV1-44	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	487.799686	973.584819	-0.018248	-8.9014E-06	-0.11295	-5.5099E-05	-0.1312	-6.4E-05	487.7995744523612	97.093	1.0371	97.093	96.629	97.666	0	0.041238	0.0001123	NaN	46.021	139	101	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132560			2065	12921	1122	1122							0.09697003113808478
ASFPLLLTL	9	Unmodified	_ASFPLLLTL_					0	0	0		nc|ENSG00000211651|P01699|IGLV1-44	nc|ENSG00000211651|P01699|IGLV1-44	nc|ENSG00000211651|P01699|IGLV1-44	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	487.799686	973.584819	0.12963	6.3233E-05	-0.24957	-0.00012174	-0.11994	-5.8507E-05	487.7995606586836	96.964	1.0958	97.034	96.549	97.645	0.070465	-0.017011	-2.0981E-05	NaN	46.021	170	110	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191330			2066	12921	1122	1122							0.09697003113808478
ASFQSTSVK	9	Unmodified	_ASFQSTSVK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.74786376953125	2	477.748182	953.481811	0.22224	0.00010617	-0.31946	-0.00015262	-0.097223	-4.6448E-05	477.7479405042041	21.365	0.5715	21.365	21.108	21.68	0					46	19	3	0	0	0	0.2141	1	2821	2821		21.59	12.207	1	147070			2067	663	1123	1123	2570	2570					0.0032089065520040094
ASFQSTSVK	9	Unmodified	_ASFQSTSVK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.74798583984375	2	477.748182	953.481811	0.39103	0.00018681	-0.47043	-0.00022475	-0.0794	-3.7933E-05	477.74782773983975	21.512	0.58508	21.412	21.188	21.773	-0.10034					42	20	3	0	0	0	0.25386	1	2874	2874		15.739	10.442	1	176310			2068	663	1123	1123	2571	2571					0.0032089065520040094
ASFQSTSVK	9	Unmodified	_ASFQSTSVK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7480773925781	2	477.748182	953.481811	0.28785	0.00013752	-0.17744	-8.4772E-05	0.11041	5.2746E-05	477.7479550484782	21.421	0.62321	21.371	21.122	21.745	-0.049376					47	21	3	0	0	0	0.22755	1	2854	2854		19.626	14.329	1	175130			2069	663	1123	1123	2572	2572					0.0032089065520040094
ASFSDYYYK	9	Unmodified	_ASFSDYYYK_					0	0	0		ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2880859375	2	572.253297	1142.49204	0.45502	0.00026038	0.38988	0.00022311	0.84489	0.00048349	572.2534371111967	44.889	0.54635	44.889	44.659	45.206	0					31	19	2	0	0	0	0.059987	1	9995	9995		61.602	38.866	1	432470			2070	3736	1124	1124	2573	2573					-0.07350546410248171
ASFSDYYYK	9	Unmodified	_ASFSDYYYK_					0	0	0		ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2880249023438	2	572.253297	1142.49204	0.54784	0.00031351	0.34895	0.00019969	0.89679	0.00051319	572.2535372760434	44.413	0.5161	44.481	44.249	44.765	0.068569					43	18	3	0	0	0	0.23235	1	9824	9824		21.537	7.6309	1	472130			2071	3736	1124	1124	2574	2574					-0.07350546410248171
ASFSKRIQK	9	Unmodified	_ASFSKRIQK_					0	0	0		ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.814208984375	2	532.81419	1063.61383	0.19457	0.00010367	-0.096371	-5.1348E-05	0.098196	5.232E-05	532.8139475725108	14.81	0.3952	14.81	14.649	15.044	0					30	13	3	0	0	0	0.07944	1	834	834		41.956	24.843	1	171210			2072	5790	1125	1125	2575	2575					0.08456540462793782
ASFSKRIQK	9	Unmodified	_ASFSKRIQK_					0	0	0		ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.8142700195312	2	532.81419	1063.61383	0.11508	6.1316E-05	0.14992	7.9878E-05	0.265	0.00014119	532.8140823023972	14.932	0.4166	14.822	14.676	15.093	-0.10981					31	14	3	0	0	0	0.12279	1	873	873		34.932	19.684	1	187980			2073	5790	1125	1125	2576	2576					0.08456540462793782
ASFSKRIQK	9	Unmodified	_ASFSKRIQK_					0	0	0		ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8143920898438	2	532.81419	1063.61383	0.1661	8.8503E-05	0.36278	0.00019329	0.52888	0.0002818	532.8142575386056	14.975	0.31291	14.911	14.7	15.013	-0.064413					25	10	3	0	0	0	0.21026	1	876	876		28.495	17	1	177980			2074	5790	1125	1125	2577	2577					0.08456540462793782
ASFSVVGMVK	10	Oxidation (M)	_ASFSVVGM(Oxidation (M))VK_		ASFSVVGM(1)VK		ASFSVVGM(40)VK	0	0	1		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7755737304688	2	520.775885	1039.53722	0.13781	7.1769E-05	-0.071148	-3.7052E-05	0.066664	3.4717E-05	520.7757199388334	40.927	0.40252	41.024	40.857	41.259	0.096626					24	14	2	0	0	0	0.13784	1	8808	8808		40.239	12.61	1	513230			2075	2256	1126	1126	2578	2578		278			0.019029808513323587
ASFSVVGMVK	10	Oxidation (M)	_ASFSVVGM(Oxidation (M))VK_					0	0	1		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	520.775885	1039.53722	0.36472	0.00018994	0.27416	0.00014277	0.63888	0.00033271	520.7760157896128	40.969	0.52937	41.06	40.927	41.456	0.090252	0.018013	0.00029845	NaN	40.239	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	500530			2076	2256	1126	1126				278			0.019029808513323587
ASGDFQTTK	9	Unmodified	_ASGDFQTTK_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7297668457031	2	477.729989	953.445425	-0.077989	-3.7257E-05	-0.56133	-0.00026817	-0.63932	-0.00030542	477.729635127092	15.549	0.434	15.549	15.382	15.816	0					25	14	2	0	0	0	0.24833	1	1061	1061		16.566	7.8205	1	62756			2077	4153	1127	1127	2579	2579					-0.033159862415232055
ASGEKFAYVPF	11	Unmodified	_ASGEKFAYVPF_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.20062255859375	3	405.873001	1214.59717	-0.38683	-0.00015701	-0.52433	-0.00021281	-0.91117	-0.00036982	406.20714812029314	14.456	0.21571	14.351	14.238	14.454	-0.10466					9	6	2	0	0	0	0.33202	1	719	719		5.0475	1.1712	1	22255			2078	290	1128	1128	2580	2580					-0.0015400521381252474
ASGEKFAYVPF	11	Unmodified	_ASGEKFAYVPF_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.873001	1214.59717	-0.37876	-0.00015373	1.5479	0.00062826	1.1692	0.00047453	406.207262381168	14.573	0.1878	14.507	14.4	14.588	-0.066068	0.078165	0.0024604	NaN	5.0475	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14499			2079	290	1128	1128							-0.0015400521381252474
ASGGIIGYVK	10	Unmodified	_ASGGIIGYVK_					0	0	0		ENSG00000111843|ENST00000229563|TMEM14C	ENSG00000111843|ENST00000229563|TMEM14C	ENSG00000111843|ENST00000229563|TMEM14C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7773742675781	2	482.776742	963.538931	0.041343	1.9959E-05	1.0649	0.0005141	1.1062	0.00053406	482.777113563397	41.314	0.43487	41.314	41.069	41.504	0					30	15	3	0	0	0	0.040354	1	8915	8915		87.258	50.752	1	361690			2080	2394	1129	1129	2581	2581					0.05570357931560466
ASGGIIGYVK	10	Unmodified	_ASGGIIGYVK_					0	0	0		ENSG00000111843|ENST00000229563|TMEM14C	ENSG00000111843|ENST00000229563|TMEM14C	ENSG00000111843|ENST00000229563|TMEM14C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7661437988281	2	482.776742	963.538931	0.19756	9.5378E-05	-0.063007	-3.0418E-05	0.13455	6.496E-05	482.77665511003204	41.117	0.55389	41.207	40.902	41.456	0.090248					36	20	3	0	0	0	0.0096682	1	8821	8821		107.1	78.018	1	452630			2081	2394	1129	1129	2582	2582					0.05570357931560466
ASGGIIGYVK	10	Unmodified	_ASGGIIGYVK_					0	0	0		ENSG00000111843|ENST00000229563|TMEM14C	ENSG00000111843|ENST00000229563|TMEM14C	ENSG00000111843|ENST00000229563|TMEM14C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7661437988281	2	482.776742	963.538931	0.069373	3.3492E-05	0.012022	5.8039E-06	0.081395	3.9296E-05	482.77674558614746	41.033	0.54054	41.13	40.857	41.397	0.096626					32	19	2	0	0	0	0.015812	1	8794	8794		96.936	60.429	1	620600			2082	2394	1129	1129	2583	2583					0.05570357931560466
ASGIYYVPK	9	Unmodified	_ASGIYYVPK_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP;nc|ENSG00000173166|Q70E73-5|RAPH1;nc|ENSG00000173166|Q70E73-2|RAPH1;nc|ENSG00000173166|Q70E73-8|RAPH1;nc|ENSG00000173166|Q70E73-7|RAPH1;nc|ENSG00000173166|Q70E73-4|RAPH1;nc|ENSG00000173166|Q70E73-3|RAPH1;nc|ENSG00000173166|Q70E73-9|RAPH1;nc|ENSG00000173166|Q70E73-6|RAPH1;ENSG00000173166|ENST00000319170|RAPH1	ENSG00000077420|ENST00000376236|APBB1IP;nc|ENSG00000173166|Q70E73-5|RAPH1	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8318176269531	2	499.271293	996.528032	0.4284	0.00021389	-1.4725	-0.00073515	-1.0441	-0.00052127	499.27054006607136	38.239	0.63571	38.33	38.011	38.647	0.090881					38	22	2	0	0	0	0.18123	1	7918	7918		34.402	13.948	1	556110			2083	1088;6697	1130	1130	2584	2584					0.029629555572796562
ASGIYYVPK	9	Unmodified	_ASGIYYVPK_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP;nc|ENSG00000173166|Q70E73-5|RAPH1;nc|ENSG00000173166|Q70E73-2|RAPH1;nc|ENSG00000173166|Q70E73-8|RAPH1;nc|ENSG00000173166|Q70E73-7|RAPH1;nc|ENSG00000173166|Q70E73-4|RAPH1;nc|ENSG00000173166|Q70E73-3|RAPH1;nc|ENSG00000173166|Q70E73-9|RAPH1;nc|ENSG00000173166|Q70E73-6|RAPH1;ENSG00000173166|ENST00000319170|RAPH1	ENSG00000077420|ENST00000376236|APBB1IP;nc|ENSG00000173166|Q70E73-5|RAPH1	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	499.271293	996.528032	0.25499	0.00012731	-0.59496	-0.00029705	-0.33998	-0.00016974	499.2710065076979	38.295	0.75891	38.295	38.007	38.765	0	-0.02342	0.00048434	NaN	34.402	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	452870			2084	1088;6697	1130	1130							0.029629555572796562
ASGIYYVPK	9	Unmodified	_ASGIYYVPK_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP;nc|ENSG00000173166|Q70E73-5|RAPH1;nc|ENSG00000173166|Q70E73-2|RAPH1;nc|ENSG00000173166|Q70E73-8|RAPH1;nc|ENSG00000173166|Q70E73-7|RAPH1;nc|ENSG00000173166|Q70E73-4|RAPH1;nc|ENSG00000173166|Q70E73-3|RAPH1;nc|ENSG00000173166|Q70E73-9|RAPH1;nc|ENSG00000173166|Q70E73-6|RAPH1;ENSG00000173166|ENST00000319170|RAPH1	ENSG00000077420|ENST00000376236|APBB1IP;nc|ENSG00000173166|Q70E73-5|RAPH1	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	499.271293	996.528032	0.32012	0.00015983	-1.273	-0.00063559	-0.95292	-0.00047576	499.27031845223024	38.233	0.7526	38.33	37.981	38.733	0.097527	0.012118	-0.00019274	NaN	34.402	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412930			2085	1088;6697	1130	1130							0.029629555572796562
ASGLEANDVEH	11	Unmodified	_ASGLEANDVEH_					0	0	0			REV__nc|ENSG00000149516|Q96HJ5-2|MS4A3	REV__nc|ENSG00000149516|Q96HJ5-2|MS4A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.775634765625	2	571.259642	1140.50473	0.072916	4.1654E-05	-1.443	-0.00082432	-1.3701	-0.00078266	571.2585264941252	25.585	0.40071	25.53	25.25	25.65	-0.055931					18	13	2	0	0	0	0.42762	1	4111	4111		7.609	1.8771	1	43620	+		2086	16473	1131	1131	2585	2585					-0.05990135017987086
ASGLEANDVEH	11	Unmodified	_ASGLEANDVEH_					0	0	0			REV__nc|ENSG00000149516|Q96HJ5-2|MS4A3	REV__nc|ENSG00000149516|Q96HJ5-2|MS4A3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	571.259642	1140.50473	0.072916	4.1654E-05	-1.443	-0.00082432	-1.3701	-0.00078266	571.2585264941252	25.585	0.40071	25.53	25.25	25.65	-0.055931	-0.025502	4.3504E-05	NaN	7.609	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43620	+		2087	16473	1131	1131							-0.05990135017987086
ASGQPRVSP	9	Unmodified	_ASGQPRVSP_					0	0	0		ENST00000533820.5_1_11:64978781-64979063:+|nuORF	ENST00000533820.5_1_11:64978781-64979063:+|nuORF	ENST00000533820.5_1_11:64978781-64979063:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.7403869628906	2	449.740691	897.466829	-0.02397	-1.078E-05	-0.39022	-0.0001755	-0.41419	-0.00018628	449.74048663025775	17.18	0.79522	17.063	16.72	17.515	-0.11739					44	28	2	0	0	0	0.25431	1	1532	1532		9.3831	1.473	1	190840			2088	11653	1132	1132	2586	2586					0.013994435778499792
ASGSFKLNK	9	Unmodified	_ASGSFKLNK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2;ENSG00000168298|ENST00000304218|H1-4;ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7324523925781	2	476.266542	950.51853	0.063312	3.0154E-05	-0.12621	-6.0108E-05	-0.062894	-2.9954E-05	476.2663858023041	18.255	0.60337	18.138	17.928	18.531	-0.11739					46	20	3	0	0	0	0.23749	1	1901	1901		15.248	4.4246	1	186500			2089	3169	1133	1133	2587	2587					0.04129187271757928
ASGSFKLNK	9	Unmodified	_ASGSFKLNK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2;ENSG00000168298|ENST00000304218|H1-4;ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000184357|ENST00000331442|H1-5	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7325439453125	2	476.266542	950.51853	-0.038358	-1.8269E-05	0.076103	3.6245E-05	0.037745	1.7977E-05	476.26651075167894	18.292	0.62351	18.234	18.004	18.628	-0.058174					46	21	3	0	0	0	0.23235	1	1901	1901		16.149	3.6176	1	202700			2090	3169	1133	1133	2588	2588					0.04129187271757928
ASGSTTFTK	9	Unmodified	_ASGSTTFTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2265319824219	2	450.227082	898.439611	-0.029859	-1.3443E-05	-1.1908	-0.00053615	-1.2207	-0.0005496	450.22659486211677	15.592	0.68114	15.592	15.382	16.063	0					57	23	4	0	0	0	0.043711	2	1097	1052;1097		55.235	26.153	1	344780			2091	6781	1134	1134	2589;2590	2590					-0.013670847531784602
ASGSTTFTK	9	Unmodified	_ASGSTTFTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.22662353515625	2	450.227082	898.439611	-0.035452	-1.5961E-05	-0.7081	-0.00031881	-0.74355	-0.00033477	450.22665839781183	15.685	0.76434	15.575	15.38	16.144	-0.10981					51	25	3	0	0	0	0.022205	2	1104	1104;1148		63.227	27.1	1	332430			2092	6781	1134	1134	2591;2592	2591					-0.013670847531784602
ASGSTTFTK	9	Unmodified	_ASGSTTFTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2267150878906	2	450.227082	898.439611	-0.01071	-4.822E-06	-0.82653	-0.00037212	-0.83724	-0.00037695	450.2266792074515	15.662	0.72781	15.598	15.391	16.119	-0.064413					45	24	3	0	0	0	0.073988	2	1075	1075;1120		43.982	7.9672	1	366780			2093	6781	1134	1134	2593;2594	2593					-0.013670847531784602
ASGWRAAVPAA	11	Unmodified	_ASGWRAAVPAA_					0	0	0		ENST00000313835.13_1_1:145827007-145827070:-|nuORF	ENST00000313835.13_1_1:145827007-145827070:-|nuORF	ENST00000313835.13_1_1:145827007-145827070:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2989501953125	2	528.78289	1055.55123	0.35938	0.00019003	-3.1006	-0.0016395	-2.7412	-0.0014495	528.7828213632381	23.786	0.74883	23.786	23.336	24.085	0					43	25	2	0	0	0	0.37965	1	3593	3593		13.906	0.86358	1	130310			2094	9337	1135	1135	2595	2595					0.02567394394600342
ASGYFAVFR	9	Unmodified	_ASGYFAVFR_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7764892578125	2	509.261259	1016.50797	0.55676	0.00028354	0.513	0.00026125	1.0698	0.00054479	509.26106759617016	55.036	0.43787	55.036	54.864	55.302	0					26	15	2	0	0	0	0.20881	1	13115	13115		27.629	10.687	1	320340			2095	1049	1136	1136	2596	2596					0.00037204617331099143
ASGYFAVFR	9	Unmodified	_ASGYFAVFR_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7762756347656	2	509.261259	1016.50797	0.55616	0.00028323	0.45119	0.00022977	1.0074	0.00051301	509.26131627336264	55.001	0.34667	55.064	54.89	55.237	0.063202					20	12	2	0	0	0	0.18936	1	13096	13096		32.786	18.204	1	335740			2096	1049	1136	1136	2597	2597					0.00037204617331099143
ASGYFAVFR	9	Unmodified	_ASGYFAVFR_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7759704589844	2	509.261259	1016.50797	0.39934	0.00020337	0.55813	0.00028424	0.95747	0.0004876	509.2614502668235	55.344	0.45916	55.325	55.025	55.484	-0.019081					25	16	2	0	0	0	0.14646	1	13223	13223		36.506	19.564	1	244370			2097	1049	1136	1136	2598	2598					0.00037204617331099143
ASHARGAAV	9	Unmodified	_ASHARGAAV_					0	0	0		ENSG00000177352|ENST00000321895|CCDC71	ENSG00000177352|ENST00000321895|CCDC71	ENSG00000177352|ENST00000321895|CCDC71	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2134094238281	2	420.227751	838.440949	-0.18105	-7.6083E-05	0.81537	0.00034264	0.63431	0.00026656	420.22798869319143	18.942	0.82882	18.884	18.341	19.17	-0.058174					55	28	3	0	0	0	0.31038	1	2131	2131		7.2892	1.5288	1	190180			2098	6979	1137	1137	2599	2599					0.015265941262214255
ASHIMLHRSPA	11	Unmodified	_ASHIMLHRSPA_					0	0	0			REV__ENST00000399916.5_1_1:25291100-25291430:-|nuORF	REV__ENST00000399916.5_1_1:25291100-25291430:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.7852478027344	3	407.216997	1218.62916	-0.14377	-5.8547E-05	4.3281	0.0017625	4.1843	0.0017039	407.5522820052643	26.858	0.11198	26.858	26.813	26.925	0					5	3	2	0	0	0	0.33149	1	4467	4467		2.4348	0.18206	1	21586	+		2099	20696	1138	1138	2600	2600					0.02859083988346356
ASHLKMSSEER	11	Unmodified	_ASHLKMSSEER_					0	0	0		nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF;PLEKHA7|p.G1041Vfs*31|1|0.13|ENSG00000166689|chr11:16789809-16789809|C/-|frameshift_variant;nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7	nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.5434265136719	3	425.543438	1273.60848	-0.38647	-0.00016446	0.043813	1.8644E-05	-0.34265	-0.00014581	425.54351556498574	13.564	0.45153	13.564	13.396	13.847	0					26	15	3	0	0	0	0.46969	1	472	472		0.84494	0.28177	1	84575			2100	11542	1139	1139	2601	2601					-0.017375511819864187
ASHLKMSSEER	11	Unmodified	_ASHLKMSSEER_					0	0	0		nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF;PLEKHA7|p.G1041Vfs*31|1|0.13|ENSG00000166689|chr11:16789809-16789809|C/-|frameshift_variant;nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7	nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	425.543438	1273.60848	-0.46181	-0.00019652	0.19363	8.2399E-05	-0.26818	-0.00011412	425.5434710943447	13.645	0.3793	13.546	13.389	13.768	-0.099291	-0.020959	0.00024212	NaN	0.84494	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77623			2101	11542	1139	1139							-0.017375511819864187
ASHLKMSSEER	11	Unmodified	_ASHLKMSSEER_					0	0	0		nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF;PLEKHA7|p.G1041Vfs*31|1|0.13|ENSG00000166689|chr11:16789809-16789809|C/-|frameshift_variant;nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7	nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	425.543438	1273.60848	-0.40834	-0.00017377	-0.21381	-9.0984E-05	-0.62214	-0.00026475	425.5432595550947	13.659	0.44485	13.592	13.443	13.888	-0.067266	0.024453	-0.00027803	NaN	0.84494	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74610			2102	11542	1139	1139							-0.017375511819864187
ASHPPPLL	8	Unmodified	_ASHPPPLL_					0	0	0			REV__ENST00000458258.5_1_9:114982454-114982712:-|nuORF	REV__ENST00000458258.5_1_9:114982454-114982712:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.215576171875	2	416.239796	830.465038	-0.1734	-7.2175E-05	-0.19015	-7.9147E-05	-0.36355	-0.00015132	416.2396495327685	22.329	0.51556	22.329	22.133	22.649	0					26	17	2	0	0	0	0.33995	1	3140	3140		15.768	0	1	81671	+		2103	21187	1140	1140	2602	2602					0.04302434559906487
ASHRPIKGILK	11	Unmodified	_ASHRPIKGILK_					0	0	0		ENST00000462906.1_1_3:195256593-195269923:-|nuORF;ENSG00000184203|ENST00000618156|PPP1R2;ENSG00000231989|ENST00000522232|PPP1R2B	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.2592468261719	3	407.259302	1218.75608	-0.18072	-7.36E-05	0.10991	4.4764E-05	-0.070806	-2.8837E-05	407.2593289545688	18.098	0.64812	18.098	17.802	18.451	0					58	21	4	0	0	0	0.2454	1	1835	1835		27.129	11.39	1	255720			2104	7435	1141	1141	2603	2603					0.1554475320497204
ASHRPIKGILK	11	Unmodified	_ASHRPIKGILK_					0	0	0		ENST00000462906.1_1_3:195256593-195269923:-|nuORF;ENSG00000184203|ENST00000618156|PPP1R2;ENSG00000231989|ENST00000522232|PPP1R2B	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.8887634277344	3	407.259302	1218.75608	-0.20798	-8.4702E-05	0.049039	1.9972E-05	-0.15894	-6.473E-05	407.2593170503817	18.211	0.63474	18.094	17.866	18.501	-0.11739					59	21	4	0	0	0	0.29397	1	1881	1881		31.462	21.311	1	223110			2105	7435	1141	1141	2604	2604					0.1554475320497204
ASHRPIKGILK	11	Unmodified	_ASHRPIKGILK_					0	0	0		ENST00000462906.1_1_3:195256593-195269923:-|nuORF;ENSG00000184203|ENST00000618156|PPP1R2;ENSG00000231989|ENST00000522232|PPP1R2B	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2591552734375	3	407.259302	1218.75608	-0.28542	-0.00011624	0.1998	8.1371E-05	-0.085619	-3.4869E-05	407.2593709771338	18.288	0.72735	18.23	17.927	18.654	-0.058172					66	25	4	0	0	0	0.081251	1	1900	1900		44.207	29.25	1	319800			2106	7435	1141	1141	2605	2605					0.1554475320497204
ASHRTQKI	8	Unmodified	_ASHRTQKI_					0	0	0			REV__ENST00000568009.1_1_16:53669439-53672248:-|nuORF	REV__ENST00000568009.1_1_16:53669439-53672248:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.80035400390625	2	470.769783	939.525013	-0.044418	-2.091E-05	-0.07037	-3.3128E-05	-0.11479	-5.4039E-05	470.7698045064329	18.028	0.66379	17.911	17.603	18.267	-0.11739					38	22	2	0	0	0	0.34272	1	1832	1832		7.9102	7.9102	1	111630	+		2107	22387	1142	1142	2606	2606					0.052831252231385406
ASICAGECRTV	11	Unmodified	_ASICAGECRTV_					0	0	0			REV__ENSG00000184956|ENST00000421673|MUC6	REV__ENSG00000184956|ENST00000421673|MUC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2570190429688	2	555.257533	1108.50051	0.15307	8.4994E-05	1.7374	0.00096472	1.8905	0.0010497	555.2586451150393	19.176	0.72056	19.12	18.931	19.652	-0.055693					37	24	2	0	0	0	0.43149	1	2143	2143		7.1017	0.37856	1	75070	+		2108	18344	1143	1143	2607	2607					-0.049396390369338405
ASIGNAQKL	9	Unmodified	_ASIGNAQKL_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2585754394531	2	451.258717	900.50288	0.0045724	2.0634E-06	-0.16871	-7.6134E-05	-0.16414	-7.4071E-05	451.2584968760088	26.137	0.79278	26.099	25.871	26.664	-0.038671					49	27	3	0	0	0	0.026033	1	4290	4290		72.968	7.7329	1	315730			2109	2125	1144	1144	2608	2608					0.048649007547169276
ASIGNAQKL	9	Unmodified	_ASIGNAQKL_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	451.258717	900.50288	0.047266	2.1329E-05	-0.27731	-0.00012514	-0.23005	-0.00010381	451.2584718320269	26.102	1.0547	26.102	25.925	26.979	0	-0.016747	6.35E-05	NaN	72.968	52	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281460			2110	2125	1144	1144							0.048649007547169276
ASIGNAQKL	9	Unmodified	_ASIGNAQKL_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	451.258717	900.50288	0.2059	9.2916E-05	-0.74677	-0.00033699	-0.54087	-0.00024407	451.258339919355	26.177	0.86612	26.155	25.945	26.811	-0.022238	0.036324	-0.00036019	NaN	72.968	57	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277050			2111	2125	1144	1144							0.048649007547169276
ASIGSPKRK	9	Unmodified	_ASIGSPKRK_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.28753662109375	2	472.287808	942.561064	-0.26199	-0.00012373	-0.081804	-3.8635E-05	-0.34379	-0.00016237	472.28770428198834	12.29	0.42795	12.29	12.07	12.498	0					29	16	2	0	0	0	0.15763	1	92	92		29.841	19.017	1	326470			2112	3074	1145	1145	2609	2609					0.0874858239999412
ASILDKNAK	9	Unmodified	_ASILDKNAK_					0	0	0			REV__ENSG00000169877|ENST00000302312|AHSP	REV__ENSG00000169877|ENST00000302312|AHSP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.76849365234375	2	480.279649	958.544745	-0.034184	-1.6418E-05	-0.24032	-0.00011542	-0.27451	-0.00013184	480.2796626817879	14.667	0.3733	14.562	14.338	14.711	-0.10466					23	12	2	0	0	0	0.24289	1	777	777		18.146	4.2403	1	155320	+		2113	17547	1146	1146	2610	2610					0.06381456443239131
ASINLNAINK	10	Unmodified	_ASINLNAINK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000398050.3_1_10:127355642-127355750:-|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.303955078125	2	529.303655	1056.59276	0.62557	0.00033112	0.071816	3.8013E-05	0.69739	0.00036913	529.3036488473061	40.678	1.0641	40.678	40.161	41.225	0					91	38	4	0	0	0	2.9523E-20	2	8706	8706;8760		205.91	76.98	1	2209200			2114	4896	1147	1147	2611;2612	2611					0.0667253036326656
ASINLNAINK	10	Unmodified	_ASINLNAINK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000398050.3_1_10:127355642-127355750:-|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3038940429688	2	529.303655	1056.59276	0.59347	0.00031412	0.017228	9.1189E-06	0.6107	0.00032324	529.3036269470738	40.482	0.94135	40.575	40.09	41.031	0.09267					91	34	4	0	0	0	4.408E-29	2	8647	8647;8702		243.33	82.637	1	2514800			2115	4896	1147	1147	2613;2614	2613					0.0667253036326656
ASINLNAINK	10	Unmodified	_ASINLNAINK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000398050.3_1_10:127355642-127355750:-|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3038330078125	2	529.303655	1056.59276	0.60657	0.00032106	0.14133	7.4807E-05	0.7479	0.00039587	529.3036365027916	40.409	0.92812	40.508	40.062	40.99	0.099407					85	33	4	0	0	0	1.46E-28	3	8632	8585;8632;8682		228.37	80.1	1	2460400			2116	4896	1147	1147	2615;2616;2617	2616					0.0667253036326656
ASIPHVIAR	9	Unmodified	_ASIPHVIAR_					0	0	0		ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.27203369140625	2	482.290351	962.566149	0.20458	9.8669E-05	1.8407	0.00088776	2.0453	0.00098643	482.2901921357515	30.751	0.45729	30.779	30.496	30.954	0.027946					22	15	2	0	0	0	0.25706	1	5660	5660		6.7232	1.4925	1	114100			2117	2534	1148	1148	2618	2618					0.08336886262600274
ASIPHVIAR	9	Unmodified	_ASIPHVIAR_					0	0	0		ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	482.290351	962.566149	0.19329	9.3222E-05	2.3729	0.0011444	2.5662	0.0012377	482.2904495786759	30.72	0.39456	30.72	30.553	30.948	0	-0.029547	0.00019603	NaN	6.7232	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148880			2118	2534	1148	1148							0.08336886262600274
ASIPTILTH	9	Unmodified	_ASIPTILTH_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7767333984375	2	476.776742	951.538931	0.16089	7.671E-05	-0.3091	-0.00014737	-0.1482	-7.066E-05	476.7765322406694	49.981	0.99887	49.981	49.408	50.407	0					76	36	4	0	0	0	0.014888	2	11537	11537;11585		71.922	39.594	1	1215600			2119	7169	1149	1149	2619;2620	2619					0.06122357931565148
ASIPTILTH	9	Unmodified	_ASIPTILTH_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7765808105469	2	476.776742	951.538931	0.48505	0.00023126	-0.3639	-0.0001735	0.12115	5.7761E-05	476.7764565987011	49.967	0.89777	50.012	49.593	50.491	0.044891					77	33	3	0	0	0	0.0037772	2	11560	11513;11560		96.111	59.984	1	1296300			2120	7169	1149	1149	2621;2622	2622					0.06122357931565148
ASIPTILTH	9	Unmodified	_ASIPTILTH_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.7768249511719	2	476.776742	951.538931	0.46178	0.00022017	-0.4671	-0.0002227	-0.0053126	-2.5329E-06	476.7764805544262	49.978	0.90392	49.999	49.483	50.387	0.020691					80	33	4	0	0	0	0.034444	1	11530	11530		58.679	20.528	1	1414300			2121	7169	1149	1149	2623	2623					0.06122357931565148
ASIRRGPF	8	Unmodified	_ASIRRGPF_					0	0	0			REV__nc|ENSG00000008128|Q9UQ88-8|CDK11A	REV__nc|ENSG00000008128|Q9UQ88-8|CDK11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.5763244628906	2	452.261594	902.508634	-0.99528	-0.00045013	0.7177	0.00032459	-0.27758	-0.00012554	452.2619357334389	34.48	0.26888	34.556	34.444	34.713	0.075306					11	9	2	0	0	0	0.34218	1	6780	6780		9.3474	0.75416	1	35466	+		2122	13396	1150	1150	2624	2624					0.05348044057052448
ASISGMEITK	10	Oxidation (M)	_ASISGM(Oxidation (M))EITK_		ASISGM(1)EITK		ASISGM(69)EITK	0	0	1		ENST00000547564.1_1_12:44196258-44199673:-|nuORF	ENST00000547564.1_1_12:44196258-44199673:-|nuORF	ENST00000547564.1_1_12:44196258-44199673:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7684326171875	2	526.768257	1051.52196	0.58805	0.00030977	-0.24355	-0.00012829	0.3445	0.00018147	526.7680618420533	26.409	0.54172	26.387	26.158	26.7	-0.022236					37	18	3	0	0	0	0.022722	1	4346	4346		68.76	21.165	1	403740			2123	11771	1151	1151	2625	2625		961			-0.0017393073655966873
ASISIADPFFR	11	Unmodified	_ASISIADPFFR_					0	0	0		ENST00000531055.1_1_6:26370743-26373574:+|nuORF;nc|ENSG00000186470|P78410-3|BTN3A2;nc|ENSG00000186470|P78410-2|BTN3A2;ENSG00000186470|ENST00000377708|BTN3A2;ENST00000480110.5_1_6:26445933-26448699:+|nuORF;ENST00000082468.11_1_6:26405791-26410201:+|nuORF;nc|ENSG00000026950|O00481-2|BTN3A1;nc|ENSG00000026950|O00481-3|BTN3A1;BTN3A1|p.E427Pfs*12|1|0.03|ENSG00000026950|chr6:26413428-26413429|-/CCCA|frameshift_variant;nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3;nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1	ENST00000531055.1_1_6:26370743-26373574:+|nuORF;nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.3255004882812	2	612.324588	1222.63462	0.34138	0.00020904	0.96327	0.00058983	1.3047	0.00079887	612.3249121676265	68.549	0.40489	68.549	68.381	68.786	0					35	14	3	0	0	0	0.0094061	1	17276	17276		70.929	51.567	1	408180			2124	2390;7620	1152	1152	2626	2626					0.032210860517807305
ASISIADPFFR	11	Unmodified	_ASISIADPFFR_					0	0	0		ENST00000531055.1_1_6:26370743-26373574:+|nuORF;nc|ENSG00000186470|P78410-3|BTN3A2;nc|ENSG00000186470|P78410-2|BTN3A2;ENSG00000186470|ENST00000377708|BTN3A2;ENST00000480110.5_1_6:26445933-26448699:+|nuORF;ENST00000082468.11_1_6:26405791-26410201:+|nuORF;nc|ENSG00000026950|O00481-2|BTN3A1;nc|ENSG00000026950|O00481-3|BTN3A1;BTN3A1|p.E427Pfs*12|1|0.03|ENSG00000026950|chr6:26413428-26413429|-/CCCA|frameshift_variant;nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3;nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1	ENST00000531055.1_1_6:26370743-26373574:+|nuORF;nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.324951171875	2	612.324588	1222.63462	0.21921	0.00013423	0.78126	0.00047838	1.0005	0.00061261	612.3248066390944	68.502	0.5266	68.574	68.304	68.83	0.071938					37	19	3	0	0	0	0.085994	1	17245	17245		42.835	28.43	1	511970			2125	2390;7620	1152	1152	2627	2627					0.032210860517807305
ASISIADPFFR	11	Unmodified	_ASISIADPFFR_					0	0	0		ENST00000531055.1_1_6:26370743-26373574:+|nuORF;nc|ENSG00000186470|P78410-3|BTN3A2;nc|ENSG00000186470|P78410-2|BTN3A2;ENSG00000186470|ENST00000377708|BTN3A2;ENST00000480110.5_1_6:26445933-26448699:+|nuORF;ENST00000082468.11_1_6:26405791-26410201:+|nuORF;nc|ENSG00000026950|O00481-2|BTN3A1;nc|ENSG00000026950|O00481-3|BTN3A1;BTN3A1|p.E427Pfs*12|1|0.03|ENSG00000026950|chr6:26413428-26413429|-/CCCA|frameshift_variant;nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3;nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1	ENST00000531055.1_1_6:26370743-26373574:+|nuORF;nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.3250122070312	2	612.324588	1222.63462	0.32003	0.00019596	0.75993	0.00046533	1.08	0.00066129	612.3247807408866	68.554	0.55016	68.535	68.345	68.895	-0.019157					39	19	3	0	0	0	0.0094061	1	17279	17279		70.929	52.556	1	512410			2126	2390;7620	1152	1152	2628	2628					0.032210860517807305
ASISLAQYL	9	Unmodified	_ASISLAQYL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-7|PCBP2	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2686462402344	2	483.26875	964.522947	0.097025	4.6889E-05	-0.16846	-8.141E-05	-0.071433	-3.4521E-05	483.2685915868038	75.448	0.64252	75.448	75.178	75.821	0					78	22	5	0	0	0	0.010453	1	19420	19420		78.728	20.049	1	1302600			2127	6364;7929	1153	1153	2629	2629					0.03926651694678185
ASISLAQYL	9	Unmodified	_ASISLAQYL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-7|PCBP2	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2686462402344	2	483.26875	964.522947	0.26776	0.0001294	-0.37598	-0.0001817	-0.10822	-5.23E-05	483.2685369703096	75.404	0.72798	75.456	75.187	75.915	0.052361					66	26	3	0	0	0	0.010453	3	19389	19340;19389;19439		78.728	20.049	1	1235200			2128	6364;7929	1153	1153	2630;2631;2632	2631					0.03926651694678185
ASISLAQYL	9	Unmodified	_ASISLAQYL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-7|PCBP2	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2685546875	2	483.26875	964.522947	0.40588	0.00019615	-0.42827	-0.00020697	-0.022386	-1.0818E-05	483.268463741703	75.508	0.74595	75.477	75.135	75.881	-0.031479					91	27	5	0	0	0	0.010453	3	19413	19362;19413;19461		78.728	20.049	1	1322800			2129	6364;7929	1153	1153	2633;2634;2635	2634					0.03926651694678185
ASITLQQQL	9	Unmodified	_ASITLQQQL_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.28533935546875	2	501.284931	1000.55531	0.59287	0.0002972	0.36802	0.00018448	0.96089	0.00048168	501.2851215330102	53.81	0.51437	53.81	53.622	54.136	0					41	18	3	0	0	0	0.003317	1	12760	12760		99.755	34.52	1	581120			2130	8155	1154	1154	2636	2636					0.05505439097669296
ASITLQQQL	9	Unmodified	_ASITLQQQL_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2853698730469	2	501.284931	1000.55531	0.28457	0.00014265	0.75216	0.00037704	1.0367	0.00051969	501.28531844907553	53.818	0.55004	53.874	53.611	54.161	0.056255					34	20	2	0	0	0	0.0046246	1	12737	12737		89.401	33.224	1	558950			2131	8155	1154	1154	2637	2637					0.05505439097669296
ASITLQQQL	9	Unmodified	_ASITLQQQL_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2508850097656	2	501.284931	1000.55531	0.46634	0.00023377	0.20029	0.0001004	0.66663	0.00033417	501.28506719321837	53.98	0.43135	53.964	53.739	54.17	-0.015331					32	15	3	0	0	0	0.075356	1	12767	12767		63.961	24.011	1	638620			2132	8155	1154	1154	2638	2638					0.05505439097669296
ASITPVKSK	9	Unmodified	_ASITPVKSK_					0	0	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;ENSG00000168386|ENST00000477258|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.78399658203125	2	465.784567	929.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.745	1	14.745	14.245	15.245	0								0	0	0	0.22666	1	818	818		13.906	0	1				2133	12829	1155	1155	2639	2639					0.08698644448611503
ASITPVKSK	9	Unmodified	_ASITPVKSK_					0	0	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;ENSG00000168386|ENST00000477258|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7841491699219	2	465.784567	929.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.821	1	14.711	14.211	15.211	-0.10981								0	0	0	0.21673	1	843	843		17.113	1.8644	1				2134	12829	1155	1155	2640	2640					0.08698644448611503
ASITPVKSK	9	Unmodified	_ASITPVKSK_					0	0	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;ENSG00000168386|ENST00000477258|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.78411865234375	2	465.784567	929.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.856	1	14.792	14.292	15.292	-0.064413								0	0	0	0.21353	1	850	850		18.146	0	1				2135	12829	1155	1155	2641	2641					0.08698644448611503
ASIVEVLLK	9	Unmodified	_ASIVEVLLK_					0	0	0		nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	486.310418	970.606283	0.42681	0.00020756	-0.17193	-8.3609E-05	0.25488	0.00012395	486.3101452870298	64.694	0.50661	64.694	64.454	64.96	0					35	18	3	0	0	0	0.14646	1	16075	16075		43.772	9.3707	1	292780			2136	1865	1156	1156	2642	2642					0.11980388142524134
ASIVEVLLK	9	Unmodified	_ASIVEVLLK_					0	0	0		nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80035400390625	2	486.310418	970.606283	0.43423	0.00021117	-0.23305	-0.00011334	0.20118	9.7836E-05	486.310127172958	64.58	0.4645	64.672	64.445	64.909	0.09288					33	16	3	0	0	0	0.1335	1	16043	16043		47.594	13.193	1	372710			2137	1865	1156	1156	2643	2643					0.11980388142524134
ASIVEVLLK	9	Unmodified	_ASIVEVLLK_					0	0	0		nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8005676269531	2	486.310418	970.606283	0.42599	0.00020717	-0.1033	-5.0234E-05	0.3227	0.00015693	486.31021823611314	64.675	0.48135	64.665	64.443	64.924	-0.0095291					29	16	3	0	0	0	0.14646	1	16107	16107		43.772	9.3707	1	308060			2138	1865	1156	1156	2644	2644					0.11980388142524134
ASKDIHSAF	9	Unmodified	_ASKDIHSAF_					0	0	0			REV__nc|ENSG00000082512|O00463-3|TRAF5	REV__nc|ENSG00000082512|O00463-3|TRAF5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2323913574219	2	488.248349	974.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.21	1	73.21	72.71	73.71	0								0	0	0	0.23091	1	18700	18700		12.532	0	1		+		2139	13923	1157	1157	2645	2645					-0.0061168962496367385
ASKHFRFAEM	10	Unmodified	_ASKHFRFAEM_					0	0	0		ENSG00000103479|ENST00000262133|RBL2;nc|ENSG00000103479|Q08999-2|RBL2;ENST00000561512.1_1_16:53495692-53498290:+|nuORF	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.53759765625	3	408.537847	1222.59171	-0.38644	-0.00015788	-0.61524	-0.00025135	-1.0017	-0.00040922	408.537695202621	38.66	0.92056	38.66	38.269	39.189	0					98	32	4	0	0	0	0.35637	1	8098	8098		7.0371	1.1689	1	1354800			2140	1836	1158	1158	2646	2646					-0.010680072772856875
ASKHFRFAEM	10	Unmodified	_ASKHFRFAEM_					0	0	0		ENSG00000103479|ENST00000262133|RBL2;nc|ENSG00000103479|Q08999-2|RBL2;ENST00000561512.1_1_16:53495692-53498290:+|nuORF	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.5376281738281	3	408.537847	1222.59171	0.071991	2.9411E-05	-1.0128	-0.00041378	-0.94084	-0.00038437	408.53757301381927	38.545	0.80993	38.636	38.294	39.104	0.090881					96	29	4	0	0	0	0.35637	1	8083	8083		7.0371	1.1689	1	1445800			2141	1836	1158	1158	2647	2647					-0.010680072772856875
ASKHFRFAEM	10	Unmodified	_ASKHFRFAEM_					0	0	0		ENSG00000103479|ENST00000262133|RBL2;nc|ENSG00000103479|Q08999-2|RBL2;ENST00000561512.1_1_16:53495692-53498290:+|nuORF	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.5377502441406	3	408.537847	1222.59171	0.14975	6.1178E-05	-1.0521	-0.00042983	-0.90237	-0.00036865	408.5375628443479	38.571	0.85969	38.669	38.266	39.126	0.097527					99	30	4	0	0	0	0.35637	1	8067	8067		7.0371	1.1689	1	1365700			2142	1836	1158	1158	2648	2648					-0.010680072772856875
ASLADIMAK	9	Oxidation (M)	_ASLADIM(Oxidation (M))AK_		ASLADIM(1)AK		ASLADIM(120)AK	0	0	1		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.24688720703125	2	468.24696	934.479368	-0.0074727	-3.499E-06	-0.46449	-0.00021749	-0.47196	-0.00022099	468.24662300323973	33.374	0.93093	33.374	32.985	33.916	0					90	33	4	0	0	0	0.0010968	3	6451	6406;6451;6497		121.53	39.333	1	1749900			2143	2563	1159	1159	2649;2650;2651	2650		319			0.00950718925878391
ASLADIMAK	9	Oxidation (M)	_ASLADIM(Oxidation (M))AK_		ASLADIM(1)AK		ASLADIM(120)AK	0	0	1		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.246337890625	2	468.24696	934.479368	0.12156	5.6922E-05	-0.78338	-0.00036682	-0.66182	-0.0003099	468.24647625546766	33.225	0.72022	33.28	32.973	33.693	0.055309					73	25	4	0	0	0	0.0010968	3	6430	6382;6430;6480		121.53	40.017	1	1870300			2144	2563	1159	1159	2652;2653;2654	2653		319			0.00950718925878391
ASLADIMAK	9	Oxidation (M)	_ASLADIM(Oxidation (M))AK_		ASLADIM(1)AK		ASLADIM(120)AK	0	0	1		ENSG00000114391|ENST00000394077|RPL24;ENST00000446071.1_1_9:72832122-72832404:+|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.24676513671875	2	468.24696	934.479368	0.083086	3.8905E-05	-0.42128	-0.00019726	-0.33819	-0.00015836	468.24663493579317	33.215	0.82635	33.269	32.985	33.811	0.054371					79	29	5	0	0	0	0.0010968	4	6414	6367;6414;6461;6538		121.53	45.773	1	1831000			2145	2563	1159	1159	2655;2656;2657;2658	2656		319			0.00950718925878391
ASLALYRRS	9	Unmodified	_ASLALYRRS_					0	0	0		ENST00000535513.1_1_15:83357409-83378458:-|nuORF	ENST00000535513.1_1_15:83357409-83378458:-|nuORF	ENST00000535513.1_1_15:83357409-83378458:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2319946289062	2	518.79854	1035.58253	0.30643	0.00015897	-0.60255	-0.0003126	-0.29613	-0.00015363	518.7976571408142	28.957	0.14268	28.959	28.847	28.99	0.0018806					6	4	2	0	0	0	0.25202	1	5113	5113		6.7232	0	1	35835			2146	11672	1160	1160	2659	2659					0.06615967428706426
ASLDAFGAFLK	11	Unmodified	_ASLDAFGAFLK_					0	0	0		ENSG00000106261|ENST00000324306|ZKSCAN1	ENSG00000106261|ENST00000324306|ZKSCAN1	ENSG00000106261|ENST00000324306|ZKSCAN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3092041015625	2	570.308406	1138.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.737	1	70.737	70.237	71.237	0								0	0	0	0.053635	1	17943	17943		55.235	13.14	1				2147	2064	1161	1161	2660	2660					0.038502986487856106
ASLDAFGAFLK	11	Unmodified	_ASLDAFGAFLK_					0	0	0		ENSG00000106261|ENST00000324306|ZKSCAN1	ENSG00000106261|ENST00000324306|ZKSCAN1	ENSG00000106261|ENST00000324306|ZKSCAN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3091430664062	2	570.308406	1138.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.74	1	70.801	70.301	71.301	0.060783								0	0	0	0.047544	1	17938	17938		57.249	15.155	1				2148	2064	1161	1161	2661	2661					0.038502986487856106
ASLDLSNPRQ	10	Unmodified	_ASLDLSNPRQ_					0	0	0			REV__ENSG00000204217|ENST00000374580|BMPR2	REV__ENSG00000204217|ENST00000374580|BMPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.78955078125	2	550.78837	1099.56219	0.74242	0.00040892	2.4257	0.001336	3.1681	0.0017449	550.7897337878055	54.909	0.61507	54.973	54.566	55.181	0.063206					36	22	2	0	0	0	0.11961	1	13064	13064		43.772	3.5332	1	1303300	+		2149	18927	1162	1162	2662	2662					0.01638751978248365
ASLDVFLGH	9	Unmodified	_ASLDVFLGH_					0	0	0		nc|ENSG00000159403|P00736|C1R;ENSG00000159403|ENST00000647956|C1R	nc|ENSG00000159403|P00736|C1R	nc|ENSG00000159403|P00736|C1R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.75347900390625	2	479.753267	957.491981	0.12578	6.0342E-05	0.24757	0.00011877	0.37334	0.00017911	479.7532957029326	59.131	0.72852	59.131	58.832	59.56	0					67	25	3	0	0	0	2.3311E-08	2	14395	14395;14445		179.23	125.65	1	1585000			2150	5406	1163	1163	2663;2664	2663					0.011534983804381227
ASLDVFLGH	9	Unmodified	_ASLDVFLGH_					0	0	0		nc|ENSG00000159403|P00736|C1R;ENSG00000159403|ENST00000647956|C1R	nc|ENSG00000159403|P00736|C1R	nc|ENSG00000159403|P00736|C1R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7533874511719	2	479.753267	957.491981	0.2631	0.00012622	0.044948	2.1564E-05	0.30805	0.00014779	479.7532133026405	59.002	0.75294	59.093	58.764	59.517	0.091301					63	26	3	0	0	0	2.3311E-08	2	14343	14343;14397		179.23	125.65	1	2018800			2151	5406	1163	1163	2665;2666	2665					0.011534983804381227
ASLDVFLGH	9	Unmodified	_ASLDVFLGH_					0	0	0		nc|ENSG00000159403|P00736|C1R;ENSG00000159403|ENST00000647956|C1R	nc|ENSG00000159403|P00736|C1R	nc|ENSG00000159403|P00736|C1R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.75323486328125	2	479.753267	957.491981	0.36705	0.00017609	0.0010836	5.1987E-07	0.36813	0.00017661	479.7531737459927	59.096	0.75985	59.081	58.806	59.566	-0.014267					65	26	3	0	0	0	4.4046E-07	2	14347	14347;14397		162.95	112.1	1	1801900			2152	5406	1163	1163	2667;2668	2667					0.011534983804381227
ASLFAVVPK	9	Unmodified	_ASLFAVVPK_					0	0	0		ENST00000404569.5_3_22:39905450-39907313:+|nuORF	ENST00000404569.5_3_22:39905450-39907313:+|nuORF	ENST00000404569.5_3_22:39905450-39907313:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7652893066406	2	466.284203	930.553853	-0.093914	-4.3791E-05	0.28394	0.0001324	0.19003	8.8608E-05	466.28428121906836	53.734	0.44118	53.79	53.482	53.923	0.056255					25	16	2	0	0	0	0.18123	1	12671	12671		34.402	15.145	1	357310			2153	10212	1164	1164	2669	2669					0.08579849799571093
ASLFAVVPK	9	Unmodified	_ASLFAVVPK_					0	0	0		ENST00000404569.5_3_22:39905450-39907313:+|nuORF	ENST00000404569.5_3_22:39905450-39907313:+|nuORF	ENST00000404569.5_3_22:39905450-39907313:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7651672363281	2	466.284203	930.553853	0.309	0.00014408	-0.55983	-0.00026104	-0.25083	-0.00011696	466.283834999199	53.834	0.45277	53.825	53.531	53.984	-0.0096054					27	16	2	0	0	0	0.12563	1	12709	12709		39.95	20.693	1	381480			2154	10212	1164	1164	2670	2670					0.08579849799571093
ASLFYATTLF	10	Unmodified	_ASLFYATTLF_					0	0	0		ENSG00000187080|ENST00000366480|OR2AK2;nc|ENSG00000187080|Q8NG84|OR2AK2	ENSG00000187080|ENST00000366480|OR2AK2	ENSG00000187080|ENST00000366480|OR2AK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3298950195312	2	567.297507	1132.58046	0.53414	0.00030302	1.2318	0.00069878	1.7659	0.0010018	567.2982814949364	83.431	0.67979	83.431	83.228	83.908	0					53	25	3	0	0	0	0.31267	1	21790	21790		6.2058	0	1	550340			2155	7662	1165	1165	2671	2671					0.019474939002293468
ASLGARFYR	9	Unmodified	_ASLGARFYR_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57630374-57630868:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7857666015625	2	520.785433	1039.55631	0.29281	0.00015249	0.29963	0.00015604	0.59244	0.00030853	520.7855876320169	31.569	1.5811	31.569	31.284	32.865	0					137	56	4	0	0	0	9.2305E-05	4	5878	5878;5925;5974;6033		142.08	100.24	1	12801000			2156	7545	1166	1166	2672;2673;2674;2675	2672					0.0381169825723191
ASLGARFYR	9	Unmodified	_ASLGARFYR_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57630374-57630868:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.78564453125	2	520.785433	1039.55631	0.2831	0.00014743	0.25805	0.00013439	0.54114	0.00028182	520.7855586172524	31.561	1.3089	31.603	31.296	32.605	0.042366					119	46	5	0	0	0	1.2283E-05	4	5924	5876;5924;5969;6017		155.03	113.19	1	14948000			2157	7545	1166	1166	2676;2677;2678;2679	2677					0.0381169825723191
ASLGARFYR	9	Unmodified	_ASLGARFYR_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57630374-57630868:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7857666015625	2	520.785433	1039.55631	0.3616	0.00018832	0.24026	0.00012512	0.60186	0.00031344	520.785547753451	31.507	1.4138	31.548	31.23	32.644	0.040991					120	50	4	0	0	0	2.942E-07	3	5884	5884;5928;5979		168.66	122.64	1	14352000			2158	7545	1166	1166	2680;2681;2682	2680					0.0381169825723191
ASLGGFLAQK	10	Unmodified	_ASLGGFLAQK_					0	0	0		nc|ENSG00000090487|Q9NZD8-2|SPG21;ENSG00000090487|ENST00000204566|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.28216552734375	2	496.282192	990.549831	0.70149	0.00034814	0.25788	0.00012798	0.95937	0.00047612	496.2823933183658	47.202	0.49514	47.202	47.024	47.519	0					36	17	3	0	0	0	0.00011263	1	10697	10697		136.39	60.631	1	561340			2159	1378	1167	1167	2683	2683					0.054177603058633395
ASLGGFLAQK	10	Unmodified	_ASLGGFLAQK_					0	0	0		nc|ENSG00000090487|Q9NZD8-2|SPG21;ENSG00000090487|ENST00000204566|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2823791503906	2	496.282192	990.549831	0.36841	0.00018283	0.68792	0.0003414	1.0563	0.00052424	496.2825548014652	47.082	0.47791	47.134	46.955	47.433	0.052574					39	17	3	0	0	0	0.0057088	1	10665	10665		103.82	50.507	1	733710			2160	1378	1167	1167	2684	2684					0.054177603058633395
ASLGGFLAQK	10	Unmodified	_ASLGGFLAQK_					0	0	0		nc|ENSG00000090487|Q9NZD8-2|SPG21;ENSG00000090487|ENST00000204566|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.283203125	2	496.282192	990.549831	1.0088	0.00050064	0.02839	1.4089E-05	1.0372	0.00051473	496.28225280964716	47.142	0.5521	47.197	46.939	47.491	0.054375					38	19	3	0	0	0	0.00018844	1	10680	10680		125.04	49.467	1	644580			2161	1378	1167	1167	2685	2685					0.054177603058633395
ASLGHILVF	9	Unmodified	_ASLGHILVF_					0	0	0		ENSG00000266964|ENST00000351325|FXYD1;ENST00000592818.5_1_19:35629760-35632121:+|nuORF;ENST00000587056.1_1_19:35630914-35632121:+|nuORF	ENSG00000266964|ENST00000351325|FXYD1	ENSG00000266964|ENST00000351325|FXYD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7821960449219	2	478.781828	955.549102	0.38603	0.00018482	0.40369	0.00019328	0.78971	0.0003781	478.7818011314082	66.116	0.69962	66.116	65.845	66.545	0					52	24	3	0	0	0	0.1669	1	16543	16543		28.487	3.813	1	543540			2162	8681	1168	1168	2686	2686					0.06954965656814238
ASLGHILVF	9	Unmodified	_ASLGHILVF_					0	0	0		ENSG00000266964|ENST00000351325|FXYD1;ENST00000592818.5_1_19:35629760-35632121:+|nuORF;ENST00000587056.1_1_19:35630914-35632121:+|nuORF	ENSG00000266964|ENST00000351325|FXYD1	ENSG00000266964|ENST00000351325|FXYD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7821044921875	2	478.781828	955.549102	0.48198	0.00023077	0.37677	0.00018039	0.85875	0.00041116	478.78180286748386	65.983	0.76575	66.067	65.807	66.572	0.084198					56	27	3	0	0	0	0.1669	1	16503	16503		28.487	3.813	1	563690			2163	8681	1168	1168	2687	2687					0.06954965656814238
ASLGHILVF	9	Unmodified	_ASLGHILVF_					0	0	0		ENSG00000266964|ENST00000351325|FXYD1;ENST00000592818.5_1_19:35629760-35632121:+|nuORF;ENST00000587056.1_1_19:35630914-35632121:+|nuORF	ENSG00000266964|ENST00000351325|FXYD1	ENSG00000266964|ENST00000351325|FXYD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.78204345703125	2	478.781828	955.549102	0.32412	0.00015518	0.38344	0.00018358	0.70757	0.00033877	478.7818793163106	66.122	0.62652	66.108	65.859	66.485	-0.013596					47	22	3	0	0	0	0.155	1	16533	16533		30.225	5.5509	1	602900			2164	8681	1168	1168	2688	2688					0.06954965656814238
ASLHVMMT	8	Unmodified	_ASLHVMMT_					0	0	0		ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.2171630859375	2	445.217149	888.419744	0.11947	5.319E-05	0.076804	3.4195E-05	0.19627	8.7385E-05	445.2170762659163	38.347	1.0382	38.347	38.034	39.073	0					74	36	3	0	0	0	0.30517	1	7970	7970		30.225	1.738	1	1472800			2165	6281	1169	1169	2689	2689					-0.028928752891374643
ASLHVMMT	8	Unmodified	_ASLHVMMT_					0	0	0		ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.2171325683594	2	445.217149	888.419744	0.23007	0.00010243	-0.17037	-7.5853E-05	0.0597	2.6579E-05	445.21702241775955	38.25	1.0147	38.341	38.011	39.026	0.090885					82	36	3	0	0	0	0.30517	1	7955	7955		30.225	3.8835	1	1727200			2166	6281	1169	1169	2690	2690					-0.028928752891374643
ASLIDLLVSK	10	Unmodified	_ASLIDLLVSK_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.242919921875	2	529.826432	1057.63831	0.40131	0.00021262	0.69834	0.00037	1.0996	0.00058262	529.826300387186	74.04	0.33061	74.04	73.86	74.191	0					14	10	2	0	0	0	0.24999	1	18940	18940		32.898	18.492	1	302210			2167	1952	1170	1170	2691	2691					0.11179755825673965
ASLIDLLVSK	10	Unmodified	_ASLIDLLVSK_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.243408203125	2	529.826432	1057.63831	0.32298	0.00017112	-0.79098	-0.00041908	-0.46801	-0.00024796	529.8258501344204	73.996	0.25749	74.048	73.86	74.117	0.052368					13	8	2	0	0	0	0.28683	1	18882	18882		22.775	11.257	1	413570			2168	1952	1170	1170	2692	2692					0.11179755825673965
ASLLDVFVLTR	11	Unmodified	_ASLLDVFVLTR_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	617.3638305664062	2	617.363713	1232.71287	0.49268	0.00030416	-0.16538	-0.0001021	0.3273	0.00020206	617.3634417119208	83.378	0.88393	83.378	83.001	83.885	0					91	33	4	0	0	0	1.1396E-25	3	21780	21780;21831;21883		218.93	148.6	1	1507300			2169	1551	1171	1171	2693;2694;2695	2693					0.105825186370339
ASLLDVFVLTR	11	Unmodified	_ASLLDVFVLTR_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	617.3638305664062	2	617.363713	1232.71287	0.29776	0.00018383	0.080367	4.9616E-05	0.37813	0.00023344	617.3635821390903	83.267	0.79575	83.34	83.003	83.799	0.073097					92	30	4	0	0	0	3.1073000000000003E-25	2	21736	21736;21785		205.73	135.4	1	1615700			2170	1551	1171	1171	2696;2697	2696					0.105825186370339
ASLLDVFVLTR	11	Unmodified	_ASLLDVFVLTR_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	617.36376953125	2	617.363713	1232.71287	0.41077	0.0002536	-0.054193	-3.3457E-05	0.35658	0.00022014	617.3634950258987	83.352	0.75568	83.332	83.053	83.809	-0.019981					92	31	4	0	0	0	3.1073000000000003E-25	2	21765	21765;21813		205.73	144.13	1	1495700			2171	1551	1171	1171	2698;2699	2698					0.105825186370339
ASLMHSFILK	10	Oxidation (M)	_ASLM(Oxidation (M))HSFILK_		ASLM(1)HSFILK		ASLM(180)HSFILK	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.8181762695312	2	581.818084	1161.62162	-0.0098293	-5.7189E-06	0.082082	4.7757E-05	0.072252	4.2038E-05	581.8181645929944	39.765	1.4405	39.765	39.164	40.604	0					174	52	5	0	0	0	3.0264E-09	5	8428	8297;8346;8387;8428;8471		176.43	113.85	1	7345000			2172	3250	1172	1172	2700;2701;2702;2703;2704	2703		415			0.0472693166807403
ASLMHSFILK	10	Oxidation (M)	_ASLM(Oxidation (M))HSFILK_		ASLM(1)HSFILK		ASLM(180)HSFILK	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.8181762695312	2	581.818084	1161.62162	0.22549	0.0001312	-0.1279	-7.4417E-05	0.097589	5.6779E-05	581.8179980284045	39.585	1.4207	39.678	39.137	40.557	0.09267					172	50	5	0	0	0	3.0264E-09	4	8298	8257;8298;8348;8393		176.43	113.85	1	7705100			2173	3250	1172	1172	2705;2706;2707;2708	2706		415			0.0472693166807403
ASLMHSFILK	10	Oxidation (M)	_ASLM(Oxidation (M))HSFILK_		ASLM(1)HSFILK		ASLM(180)HSFILK	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.8181762695312	2	581.818084	1161.62162	0.32039	0.00018641	-0.22334	-0.00012994	0.097051	5.6466E-05	581.8179712210243	39.561	1.4038	39.661	39.128	40.532	0.099407					162	50	5	0	0	0	3.0264E-09	4	8300	8251;8300;8344;8386		176.43	113.85	1	8774300			2174	3250	1172	1172	2709;2710;2711;2712	2710		415			0.0472693166807403
ASLPVRNAK	9	Unmodified	_ASLPVRNAK_					0	0	0		nc|ENSG00000145247|Q56VL3-2|OCIAD2	nc|ENSG00000145247|Q56VL3-2|OCIAD2	nc|ENSG00000145247|Q56VL3-2|OCIAD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2877197265625	2	478.287808	954.561064	0.050815	2.4304E-05	1.0417	0.00049824	1.0925	0.00052254	478.2876787321859	17.13	1.0649	17.013	16.692	17.757	-0.11739					90	37	3	0	0	0	0.21447	1	1530	1530		21.537	5.3879	1	322290			2175	12742	1173	1173	2713	2713					0.08196582399989438
ASLPVRNAK	9	Unmodified	_ASLPVRNAK_					0	0	0		nc|ENSG00000145247|Q56VL3-2|OCIAD2	nc|ENSG00000145247|Q56VL3-2|OCIAD2	nc|ENSG00000145247|Q56VL3-2|OCIAD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2875671386719	2	478.287808	954.561064	0.31011	0.00014832	0.9195	0.00043978	1.2296	0.0005881	478.287516744215	17.091	1.2243	17.031	16.676	17.9	-0.060429					109	43	3	0	0	0	0.18208	2	1559	1515;1559		26.268	8.8419	1	299600			2176	12742	1173	1173	2714;2715	2715					0.08196582399989438
ASLSGPFATVK	11	Unmodified	_ASLSGPFATVK_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7821655273438	2	539.300581	1076.58661	0.73614	0.000397	0.24226	0.00013065	0.9784	0.00052765	539.2999439916705	54.274	0.71824	54.274	53.834	54.552	0					58	25	3	0	0	0	0.22653	1	12874	12874		47.732	3.9596	1	843710	+		2177	17816	1174	1174	2716	2716					0.05138012131760661
ASLVGQTSPK	10	Unmodified	_ASLVGQTSPK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.27716064453125	2	494.277106	986.53966	0.2199	0.00010869	0.04928	2.4358E-05	0.26917	0.00013305	494.27701456775674	23.497	0.84015	23.497	23.077	23.917	0					63	28	4	0	0	0	0.01159	4	3487	3419;3435;3487;3540		80.896	38.94	1	462710			2178	697	1175	1175	2717;2718;2719;2720	2719					0.04585152580625618
ASLVGQTSPK	10	Unmodified	_ASLVGQTSPK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.27716064453125	2	494.277106	986.53966	0.28132	0.00013905	0.17662	8.7301E-05	0.45795	0.00022635	494.2769300100453	23.583	0.96317	23.51	23.092	24.055	-0.072559					69	33	3	0	0	0	0.0035922	3	3469	3469;3516;3583		99.864	54.124	1	518390			2179	697	1175	1175	2721;2722;2723	2721					0.04585152580625618
ASLVGQTSPK	10	Unmodified	_ASLVGQTSPK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2770690917969	2	494.277106	986.53966	0.39838	0.00019691	0.15408	7.6157E-05	0.55246	0.00027307	494.2768843165395	23.589	0.79555	23.55	23.143	23.939	-0.038927					62	27	3	0	0	0	0.032393	2	3540	3446;3540		62.869	27.937	1	451890			2180	697	1175	1175	2724;2725	2725					0.04585152580625618
ASLVGRSKTI	10	Unmodified	_ASLVGRSKTI_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.3141479492188	2	516.314023	1030.61349	0.32446	0.00016752	0.28251	0.00014586	0.60696	0.00031338	516.3141153441646	88.954	1.452	88.953	88.541	89.993	-0.00080872					230	86	4	0	0	0	0.38773	1	23652	23652		5.7319	5.7319	1	7062300			2181	3332	1176	1176	2726	2726					0.0994112074295117
ASLVLKRLGFK	11	Unmodified	_ASLVLKRLGFK_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.55938720703125	3	411.267686	1230.78123	0.048603	1.9989E-05	0.30238	0.00012436	0.35098	0.00014435	411.2678001068825	36.4	0.53119	36.4	36.168	36.7	0					30	18	2	0	0	0	0.33056	1	7352	7352		1.9275	0	1	412650			2182	1046	1177	1177	2727	2727					0.17506808007556174
ASLVLKRLGFK	11	Unmodified	_ASLVLKRLGFK_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.55938720703125	3	411.267686	1230.78123	0.32543	0.00013384	-0.07619	-3.1334E-05	0.24924	0.0001025	411.26768006451726	36.249	0.47784	36.331	36.143	36.621	0.082355					31	16	2	0	0	0	0.33056	1	7312	7312		1.9275	0.18523	1	410330			2183	1046	1177	1177	2728	2728					0.17506808007556174
ASLVLKRLGFK	11	Unmodified	_ASLVLKRLGFK_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5592346191406	3	411.267686	1230.78123	0.50146	0.00020623	-0.4124	-0.00016961	0.08906	3.6627E-05	411.2674911813216	36.298	0.69878	36.384	36.113	36.811	0.08625					45	24	3	0	0	0	0.33056	1	7334	7334		5.8681	1.462	1	403130			2184	1046	1177	1177	2729	2729					0.17506808007556174
ASLVREFVAS	10	Unmodified	_ASLVREFVAS_					0	0	0			REV__nc|ENSG00000178149|Q5D0E6-3|DALRD3	REV__nc|ENSG00000178149|Q5D0E6-3|DALRD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.985595703125	2	539.798206	1077.58186	0.10207	5.5099E-05	2.5767	0.0013909	2.6788	0.001446	540.3016312713131	98.693	0.24004	98.693	98.52	98.76	0					36	26	2	0	0	0	0.31926	1	26430	26430		5.7319	0.97584	1	47024	+		2185	18019	1178	1178	2730	2730					0.0461712798901317
ASNKSTLEK	9	Unmodified	_ASNKSTLEK_					0	0	0			REV__nc|ENSG00000134874|Q86YF9-2|DZIP1	REV__nc|ENSG00000134874|Q86YF9-2|DZIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2745056152344	2	489.266739	976.518924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.78	1	18.78	18.28	19.28	0								0	0	0	0.21971	1	2035	2035		16.149	0	1		+		2186	15705	1179	1179	2731	2731					0.029725622009550534
ASNPATFQR	9	Unmodified	_ASNPATFQR_					0	0	0		nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.25140380859375	2	496.251423	990.488293	0.17065	8.4685E-05	0.052791	2.6198E-05	0.22344	0.00011088	496.2512101293031	22.795	0.71688	22.795	22.533	23.25	0					48	24	3	0	0	0	0.13946	1	3245	3245		47.732	29.359	1	167400			2187	13004	1180	1180	2732	2732					-0.007331713934149775
ASNPATFQR	9	Unmodified	_ASNPATFQR_					0	0	0		nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.25115966796875	2	496.251423	990.488293	0.17705	8.786E-05	0.18999	9.4282E-05	0.36704	0.00018214	496.2510885947055	22.928	0.62478	22.84	22.54	23.165	-0.087608					43	21	3	0	0	0	0.14808	1	3300	3300		46.022	31.184	1	181240			2188	13004	1180	1180	2733	2733					-0.007331713934149775
ASNPATFQR	9	Unmodified	_ASNPATFQR_					0	0	0		nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	nc|ENSG00000286140|P0CG12|DERPC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2513427734375	2	496.251423	990.488293	0.25957	0.00012881	-0.28616	-0.00014201	-0.026588	-1.3194E-05	496.2510391213195	22.966	0.88374	22.921	22.616	23.5	-0.044867					57	31	3	0	0	0	0.13573	1	3298	3298		42.835	27.997	1	203290			2189	13004	1180	1180	2734	2734					-0.007331713934149775
ASNPYVEPR	9	Unmodified	_ASNPYVEPR_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7591552734375	2	516.759081	1031.50361	0.25055	0.00012947	0.038385	1.9836E-05	0.28893	0.00014931	516.7590422104486	25.36	0.62268	25.36	25.091	25.714	0					49	20	3	0	0	0	0.07848	1	4061	4061		42.312	15.429	1	418480			2190	2497	1181	1181	2735	2735					-0.010883045962373217
ASNPYVEPR	9	Unmodified	_ASNPYVEPR_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7592163085938	2	516.759081	1031.50361	-0.1075	-5.555E-05	0.3571	0.00018453	0.2496	0.00012898	516.7592257906673	25.434	0.63969	25.402	25.098	25.738	-0.031408					61	22	4	0	0	0	0.0099976	1	4065	4065		79.427	45.982	1	390780			2191	2497	1181	1181	2736	2736					-0.010883045962373217
ASPAPPFPVL	10	Unmodified	_ASPAPPFPVL_					0	0	0			REV__ENST00000382214.7_1_20:388826-389303:+|nuORF	REV__ENST00000382214.7_1_20:388826-389303:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2818908691406	2	498.28166	994.548768	0.69012	0.00034388	0.079186	3.9457E-05	0.76931	0.00038333	498.28150185697643	78.626	1.1645	78.626	78.276	79.441	0					127	46	3	0	0	0	0.31867	1	20396	20396		18.146	18.146	1	1322700	+		2192	20569	1182	1182	2737	2737					0.05127545936932165
ASPAPPFPVL	10	Unmodified	_ASPAPPFPVL_					0	0	0			REV__ENST00000382214.7_1_20:388826-389303:+|nuORF	REV__ENST00000382214.7_1_20:388826-389303:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	498.28166	994.548768	0.69012	0.00034388	0.079186	3.9457E-05	0.76931	0.00038333	498.28150185697643	78.626	1.1645	78.626	78.276	79.441	0	0.016945	0.0002061	NaN	18.146	127	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1322700	+		2193	20569	1182	1182							0.05127545936932165
ASPAPPFPVL	10	Unmodified	_ASPAPPFPVL_					0	0	0			REV__ENST00000382214.7_1_20:388826-389303:+|nuORF	REV__ENST00000382214.7_1_20:388826-389303:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	498.28166	994.548768	0.61388	0.00030588	-0.14632	-7.2907E-05	0.46756	0.00023298	498.28150854499785	78.54	1.0396	78.599	78.31	79.35	0.058151	-0.010137	-1.8628E-05	NaN	18.146	117	43	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1809700	+		2194	20569	1182	1182							0.05127545936932165
ASPAPPFPVL	10	Unmodified	_ASPAPPFPVL_					0	0	0			REV__ENST00000382214.7_1_20:388826-389303:+|nuORF	REV__ENST00000382214.7_1_20:388826-389303:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.28166	994.548768	0.73124	0.00036437	-0.16435	-8.1891E-05	0.5669	0.00028247	498.28145866378253	78.632	1.2952	78.602	78.301	79.596	-0.030426	-0.0068083	-3.6596E-05	NaN	18.146	139	52	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2145600	+		2195	20569	1182	1182							0.05127545936932165
ASPLNSLRE	9	Unmodified	_ASPLNSLRE_					0	0	0			REV__ENST00000354451.6_1_22:25853295-25905237:+|nuORF	REV__ENST00000354451.6_1_22:25853295-25905237:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7669982910156	2	493.766906	985.519259	0.3619	0.0001787	0.004681	2.3113E-06	0.36658	0.00018101	493.76684295959404	24.886	0.38547	24.886	24.706	25.091	0					31	13	3	0	0	0	0.24993	1	3890	3890		8.7454	0	1	129670	+		2196	20172	1183	1183	2738	2738					0.025919819208070294
ASPLRRQL	8	Unmodified	_ASPLRRQL_					0	0	0			REV__nc|ENSG00000154928|P54762-6|EPHB1	REV__nc|ENSG00000154928|P54762-6|EPHB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.8002014160156	2	470.787976	939.561398	0.041554	1.9563E-05	-0.61095	-0.00028763	-0.56939	-0.00026806	470.78800307003576	17.02	1.4385	17.02	16.72	18.158	0					141	49	6	0	0	0	0.44569	1	1731	1731		7.2892	0	1	6838000	+		2197	23037	1184	1184	2739	2739					0.0892000211983941
ASPNRLHI	8	Unmodified	_ASPNRLHI_					0	0	0			REV__nc|ENSG00000006625|O75223-3|GGCT	REV__nc|ENSG00000006625|O75223-3|GGCT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.57977294921875	2	454.259051	906.503549	0.19125	8.6878E-05	0.21393	9.7178E-05	0.40518	0.00018406	454.25919877639325	26.263	0.81997	26.24	25.991	26.811	-0.022238					55	28	3	0	0	0	0.34294	1	4257	4257		7.2892	7.2892	1	237340	+		2198	13366	1185	1185	2740	2740					0.046557401944255616
ASPQGAAERVL	11	Unmodified	_ASPQGAAERVL_					0	0	0		ENST00000589786.5_1_19:34287891-34292238:+|nuORF;ENST00000587658.5_1_19:34287007-34292238:+|nuORF	ENST00000589786.5_1_19:34287891-34292238:+|nuORF	ENST00000589786.5_1_19:34287891-34292238:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7985229492188	2	549.798737	1097.58292	0.56256	0.00030929	0.24874	0.00013675	0.81129	0.00044605	549.7983429645071	33.281	0.68571	33.336	33.063	33.749	0.055309					43	24	3	0	0	0	0.31831	1	6443	6443		20.581	1.219	1	345910			2199	12132	1186	1186	2741	2741					0.03803342357900874
ASPQLLRIIFK	11	Unmodified	_ASPQLLRIIFK_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	643.4036254882812	2	643.403173	1284.79179	0.53774	0.00034598	0.16409	0.00010557	0.70183	0.00045156	643.4032454376855	63.733	0.4092	63.733	63.532	63.941	0					21	14	2	0	0	0	0.39284	1	15833	15833		12.175	8.2984	1	154750			2200	288	1187	1187	2742	2742					0.16078790661981657
ASPQLLRIIFK	11	Unmodified	_ASPQLLRIIFK_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	643.403173	1284.79179	0.58225	0.00037462	0.13036	8.3877E-05	0.71262	0.0004585	643.4032102701763	63.599	0.51169	63.694	63.477	63.989	0.095722	-0.028367	0.00024815	NaN	12.175	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146640			2201	288	1187	1187							0.16078790661981657
ASPQLLRIIFK	11	Unmodified	_ASPQLLRIIFK_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	643.403173	1284.79179	0.63469	0.00040836	-0.16735	-0.00010767	0.46734	0.00030069	643.4030177891385	63.75	0.39896	63.741	63.591	63.99	-0.0088158	0.017874	-0.00013495	NaN	12.175	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109330			2202	288	1187	1187							0.16078790661981657
ASPRANGLDEE	11	Unmodified	_ASPRANGLDEE_					0	0	0			REV__ENSG00000083544|ENST00000377881|TDRD3	REV__ENSG00000083544|ENST00000377881|TDRD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3117065429688	2	579.772916	1157.53128	0.37309	0.00021631	-1.6426	-0.00095234	-1.2695	-0.00073603	579.7718773885806	62.771	0.38379	62.866	62.712	63.096	0.095722					23	13	2	0	0	0	0.33037	1	15535	15535		7.609	1.4032	1	157950	+		2203	13935	1188	1188	2743	2743					-0.0411844612663117
ASPWQIER	8	Unmodified	_ASPWQIER_					0	0	0			REV__KIAA0195|p.L1307Cfs*2|1|0.07|ENSG00000177728|chr17:75499000-75499000|C/-|frameshift_variant	REV__KIAA0195|p.L1307Cfs*2|1|0.07|ENSG00000177728|chr17:75499000-75499000|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.24981689453125	2	493.756341	985.498129	0.39194	0.00019352	0.12285	6.0657E-05	0.51479	0.00025418	493.75634243361907	21.676	0.52114	21.676	21.401	21.922	0					23	18	2	0	0	0	0.34353	1	2847	2847		4.756	0.42677	1	69312	+		2204	18002	1189	1189	2744	2744					0.004800166119480309
ASQDIIPQLK	10	Unmodified	_ASQDIIPQLK_					0	0	0		ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2694091796875	2	556.819138	1111.62372	0.72423	0.00040327	0.048922	2.7241E-05	0.77315	0.00043051	556.8190495228266	47.955	0.524	48.002	47.866	48.39	0.047523					33	19	2	0	0	0	0.28187	1	10977	10977		23.801	13.002	1	1156200			2205	1434	1190	1190	2745	2745					0.07237683677522
ASQDIIPQLK	10	Unmodified	_ASQDIIPQLK_					0	0	0		ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	556.819138	1111.62372	0.57145	0.00031819	0.17334	9.6518E-05	0.74479	0.00041471	556.8192661076342	47.962	0.48209	47.962	47.849	48.331	0	-0.033538	7.5331E-06	NaN	23.801	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1278700			2206	1434	1190	1190							0.07237683677522
ASQDIIPQLK	10	Unmodified	_ASQDIIPQLK_					0	0	0		ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	556.819138	1111.62372	0.4811	0.00026788	0.29866	0.0001663	0.77975	0.00043418	556.8192068764339	47.98	0.49486	48.023	47.85	48.344	0.04332	0.027045	0.0001471	NaN	23.801	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1060300			2207	1434	1190	1190							0.07237683677522
ASQEIAEKALK	11	Unmodified	_ASQEIAEKALK_					0	0	0		HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;ENSG00000126945|ENST00000316594|HNRNPH2	HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant	HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.3353881835938	2	594.335153	1186.65575	0.39142	0.00023263	-0.57841	-0.00034377	-0.18699	-0.00011113	594.3348469697326	24.426	0.59652	24.426	24.194	24.79	0					42	19	3	0	0	0	0.31508	1	3786	3786		20.871	9.3533	1	238660			2208	6324	1191	1191	2746	2746					0.06989051360642407
ASQEIAEKALK	11	Unmodified	_ASQEIAEKALK_					0	0	0		HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;ENSG00000126945|ENST00000316594|HNRNPH2	HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant	HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.3348999023438	2	594.335153	1186.65575	0.46187	0.0002745	-0.56397	-0.00033519	-0.10211	-6.0685E-05	594.3348084049614	24.535	0.58726	24.463	24.234	24.821	-0.072559					42	19	3	0	0	0	0.35571	1	3829	3829		17.049	10.418	1	262620			2209	6324	1191	1191	2747	2747					0.06989051360642407
ASQEIAEKALK	11	Unmodified	_ASQEIAEKALK_					0	0	0		HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;ENSG00000126945|ENST00000316594|HNRNPH2	HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant	HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.33544921875	2	594.335153	1186.65575	0.23408	0.00013912	-0.12722	-7.5612E-05	0.10686	6.3509E-05	594.3349399242619	24.522	0.63246	24.483	24.25	24.883	-0.038927					41	21	4	0	0	0	0.21948	1	3763	3763		51.765	30.175	1	278720			2210	6324	1191	1191	2748	2748					0.06989051360642407
ASQETVATILK	11	Unmodified	_ASQETVATILK_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8297729492188	2	580.829703	1159.64485	0.23307	0.00013537	0.076078	4.4189E-05	0.30915	0.00017956	580.8298137167411	42.856	0.66362	42.856	42.517	43.18	0					34	21	2	0	0	0	2.2957E-09	1	9361	9361		153.88	90.648	1	948870			2211	3670	1192	1192	2749	2749					0.07141648986385007
ASQETVATILK	11	Unmodified	_ASQETVATILK_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8296508789062	2	580.829703	1159.64485	0.14829	8.6132E-05	-0.0073703	-4.2809E-06	0.14092	8.1851E-05	580.8296092685447	42.634	0.59342	42.719	42.514	43.107	0.085197					36	21	2	0	0	0	1.7397E-08	1	9314	9314		133.85	86.123	1	953260			2212	3670	1192	1192	2750	2750					0.07141648986385007
ASQETVATILK	11	Unmodified	_ASQETVATILK_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8297119140625	2	580.829703	1159.64485	0.14745	8.5646E-05	0.04292	2.4929E-05	0.19037	0.00011057	580.8297219604482	42.571	0.68214	42.663	42.441	43.123	0.091362					38	24	2	0	0	0	1.1434E-12	1	9271	9271		164.39	101.16	1	811670			2213	3670	1192	1192	2751	2751					0.07141648986385007
ASQFRGLL	8	Unmodified	_ASQFRGLL_					0	0	0			REV__ENST00000511242.1_1_5:112783941-112824318:-|nuORF	REV__ENST00000511242.1_1_5:112783941-112824318:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.63580322265625	2	446.255977	890.497401	-0.31708	-0.0001415	-1.7154	-0.00076549	-2.0324	-0.00090698	446.25530268727084	34.537	0.69628	34.615	34.279	34.975	0.077377					39	24	2	0	0	0	0.34247	1	6854	6854		4.756	2.4533	1	165190	+		2214	21809	1193	1193	2752	2752					0.04777221962899603
ASQGFRFLR	9	Unmodified	_ASQGFRFLR_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2991333007812	2	541.298707	1080.58286	0.61588	0.00033337	1.2903	0.00069842	1.9061	0.0010318	541.2989740180553	37.892	0.78715	37.892	37.532	38.32	0					60	27	3	0	0	0	0.037019	1	7870	7870		57.722	23.32	1	925050			2215	3981	1194	1194	2753	2753					0.04579387148532987
ASQGFRFLR	9	Unmodified	_ASQGFRFLR_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2991943359375	2	541.298707	1080.58286	0.57182	0.00030953	0.91026	0.00049272	1.4821	0.00080225	541.2989376254358	37.794	0.87165	37.884	37.475	38.347	0.090881					89	31	5	0	0	0	0.04299	1	7828	7828		55.503	24.234	1	832180			2216	3981	1194	1194	2754	2754					0.04579387148532987
ASQGFRFLR	9	Unmodified	_ASQGFRFLR_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2991943359375	2	541.298707	1080.58286	0.53303	0.00028853	1.0684	0.0005783	1.6014	0.00086683	541.2989171762539	37.769	0.81766	37.866	37.503	38.32	0.097527					81	29	4	0	0	0	0.0098873	1	7799	7799		79.596	48.328	1	935520			2217	3981	1194	1194	2755	2755					0.04579387148532987
ASQIIPTAK	9	Unmodified	_ASQIIPTAK_					0	0	0		ENSG00000091704|ENST00000011292|CPA1	ENSG00000091704|ENST00000011292|CPA1	ENSG00000091704|ENST00000011292|CPA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.79046630859375	2	464.776742	927.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.907	1	28.918	28.418	29.418	0.01129								0	0	0	0.24066	1	5100	5100		9.3831	2.0939	1				2218	1409	1195	1195	2756	2756					0.07226357931563143
ASQLGIFISK	10	Unmodified	_ASQLGIFISK_					0	0	0		ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3112182617188	2	532.310949	1062.60735	0.46594	0.00024803	0.38317	0.00020397	0.84911	0.00045199	532.3110628072623	52.19	0.74016	52.19	51.86	52.6	0					61	23	3	0	0	0	5.3958E-05	1	12254	12254		143.22	73.878	1	2881600			2219	2948	1196	1196	2757	2757					0.07854602511406483
ASQLGIFISK	10	Unmodified	_ASQLGIFISK_					0	0	0		ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3112182617188	2	532.310949	1062.60735	0.38771	0.00020638	0.26378	0.00014041	0.65149	0.00034679	532.310964474272	52.109	1.0607	52.159	51.817	52.878	0.050575					64	26	3	0	0	0	0.00017002	1	12218	12218		132.22	40.019	1	2464800			2220	2948	1196	1196	2758	2758					0.07854602511406483
ASQLGIFISK	10	Unmodified	_ASQLGIFISK_					0	0	0		ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3113403320312	2	532.310949	1062.60735	0.28843	0.00015353	0.4501	0.00023959	0.73853	0.00039313	532.3111385617742	52.265	0.86857	52.265	51.848	52.717	-0.00081253					57	23	3	0	0	0	0.0033775	1	12268	12268		101.12	45.867	1	2815900			2221	2948	1196	1196	2759	2759					0.07854602511406483
ASQQNATVLK	10	Unmodified	_ASQQNATVLK_					0	0	0		ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2932739257812	2	530.293288	1058.57202	0.28629	0.00015182	-0.2114	-0.00011211	0.07489	3.9714E-05	530.2930880680144	19.029	0.61689	19.029	18.814	19.431	0					48	21	3	0	0	0	0.017207	1	2097	2097		74.772	44.135	1	176160			2222	10434	1197	1197	2760	2760					0.045079399835913136
ASQQNATVLK	10	Unmodified	_ASQQNATVLK_					0	0	0		ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2933349609375	2	530.293288	1058.57202	0.23793	0.00012618	-0.026196	-1.3891E-05	0.21174	0.00011228	530.2932137460499	19.172	0.59499	19.056	18.838	19.433	-0.11592					48	20	3	0	0	0	0.18357	1	2135	2135		59.013	36.355	1	187120			2223	10434	1197	1197	2761	2761					0.045079399835913136
ASQQNATVLK	10	Unmodified	_ASQQNATVLK_					0	0	0		ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2933959960938	2	530.293288	1058.57202	0.31713	0.00016817	-0.13991	-7.4195E-05	0.17721	9.3975E-05	530.2931181815401	19.089	0.63637	19.031	18.846	19.482	-0.058174					44	21	3	0	0	0	0.13386	1	2115	2115		40.725	16.704	1	196020			2224	10434	1197	1197	2762	2762					0.045079399835913136
ASQTILRTQTL	11	Unmodified	_ASQTILRTQTL_					0	0	0			REV__nc|ENSG00000163156|Q9BWG6-3|SCNM1	REV__nc|ENSG00000163156|Q9BWG6-3|SCNM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.22760009765625	3	411.238343	1230.6932	0.19995	8.2227E-05	-0.27746	-0.0001141	-0.077507	-3.1874E-05	411.23836797091127	23.952	0.88607	23.913	23.592	24.478	-0.038927					102	30	6	0	0	0	0.45202	1	3529	3529		4.4062	4.4062	1	472280	+		2225	17040	1198	1198	2763	2763					0.08708142626278459
ASQVRMKLKF	10	Unmodified	_ASQVRMKLKF_					0	0	0		ENST00000566261.5_1_16:19179374-19184899:+|nuORF;ENST00000562034.5_2_16:19184626-19184899:+|nuORF	ENST00000566261.5_1_16:19179374-19184899:+|nuORF	ENST00000566261.5_1_16:19179374-19184899:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.9292297363281	3	403.237509	1206.6907	-0.13467	-5.4303E-05	1.3351	0.00053837	1.2004	0.00048406	403.2377284502343	42.849	0.66172	42.849	42.595	43.257	0					33	23	2	0	0	0	0.31691	1	9354	9354		3.0723	0	1	446490			2226	11918	1199	1199	2764	2764					0.09562015687606618
ASQVRMKLKF	10	Unmodified	_ASQVRMKLKF_					0	0	0		ENST00000566261.5_1_16:19179374-19184899:+|nuORF;ENST00000562034.5_2_16:19184626-19184899:+|nuORF	ENST00000566261.5_1_16:19179374-19184899:+|nuORF	ENST00000566261.5_1_16:19179374-19184899:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.9292297363281	3	403.237509	1206.6907	-0.28058	-0.00011314	1.6984	0.00068484	1.4178	0.0005717	403.2379486921291	42.752	0.7318	42.838	42.539	43.271	0.085197					34	26	2	0	0	0	0.31691	1	9313	9313		1.4551	0	1	357500			2227	11918	1199	1199	2765	2765					0.09562015687606618
ASRFREWGTRA	11	Unmodified	_ASRFREWGTRA_					0	0	0			REV__ENSG00000151014|ENST00000280614|NOCT	REV__ENSG00000151014|ENST00000280614|NOCT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.6358642578125	3	446.233815	1335.67962	0.11762	5.2488E-05	4.3381	0.0019358	4.4557	0.0019883	446.2365052738518	33.496	1.0232	33.563	32.916	33.939	0.066704					69	36	3	0	0	0	0.33274	1	6482	6482		0.26539	0	1	668250	+		2228	16522	1200	1200	2766	2766					0.025203296377185325
ASRQKWTILM	10	Unmodified	_ASRQKWTILM_					0	0	0			REV__ENST00000369940.6_1_6:79595137-79607609:+|nuORF	REV__ENST00000369940.6_1_6:79595137-79607609:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2276611328125	3	411.897264	1232.66996	0.09651	3.9752E-05	0.22902	9.4332E-05	0.32553	0.00013408	411.8968955390951	24.255	0.23088	24.216	24.135	24.366	-0.038927					12	7	2	0	0	0	0.32082	1	3669	3669		3.3196	0.82116	1	35841	+		2229	20367	1201	1201	2767	2767					0.06293425307967482
ASRRRFIHRLS	11	Unmodified	_ASRRRFIHRLS_					0	0	0			REV__ENSG00000111252|ENST00000341259|SH2B3	REV__ENSG00000111252|ENST00000341259|SH2B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2563171386719	3	466.944488	1397.81163	-0.13848	-6.4662E-05	-1.4461	-0.00067527	-1.5846	-0.00073993	466.94393445997247	22.684	0.32761	22.596	22.435	22.762	-0.087608					21	11	2	0	0	0	0.33236	1	3215	3215		4.4062	1.7749	1	51707	+		2230	14713	1202	1202	2768	2768					0.12863979445319274
ASRVRPRSQ	9	Unmodified	_ASRVRPRSQ_					0	0	0			REV__nc|ENSG00000087460|P84996|GNAS	REV__nc|ENSG00000087460|P84996|GNAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8065185546875	2	528.804688	1055.59482	0.22432	0.00011862	2.3531	0.0012443	2.5774	0.001363	528.8060257998345	17.522	0.16604	17.405	17.323	17.489	-0.11739					8	5	2	0	0	0	0.33911	1	1678	1678		2.9952	0.26005	1	38906	+		2231	22902	1203	1203	2769	2769					0.06925003891751658
ASSALFMAK	9	Oxidation (M)	_ASSALFM(Oxidation (M))AK_		ASSALFM(1)AK		ASSALFM(56)AK	0	0	1		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2414245605469	2	471.241678	940.468803	-0.02954	-1.392E-05	-1.5328	-0.0007223	-1.5623	-0.00073622	471.2415136377701	29.84	0.58184	29.854	29.594	30.176	0.013475					37	19	3	0	0	0	0.041175	1	5376	5376		56.177	28.548	1	178110			2232	3221	1204	1204	2770	2770		411			-0.003812637285477649
ASSFGNMIYK	10	Oxidation (M)	_ASSFGNM(Oxidation (M))IYK_		ASSFGNM(1)IYK		ASSFGNM(57)IYK	0	0	1		ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.267578125	2	567.268424	1132.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.903	1	34.903	34.403	35.403	0								0	0	0	0.083887	1	6933	6933		57.249	40.136	1				2233	2929	1205	1205	2771	2771		369			-0.038665110166903105
ASSFGNMIYK	10	Oxidation (M)	_ASSFGNM(Oxidation (M))IYK_		ASSFGNM(1)IYK		ASSFGNM(59)IYK	0	0	1		ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2675170898438	2	567.268424	1132.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.776	1	34.852	34.352	35.352	0.075306								0	0	0	0.072354	1	6894	6894		59.368	37.831	1				2234	2929	1205	1205	2772	2772		369			-0.038665110166903105
ASSFGNMIYK	10	Oxidation (M)	_ASSFGNM(Oxidation (M))IYK_		ASSFGNM(1)IYK		ASSFGNM(74)IYK	0	0	1		ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2679443359375	2	567.268424	1132.5223	-0.63999	-0.00036305	-0.67217	-0.0003813	-1.3122	-0.00074435	567.2682640766154	34.802	0.66157	34.879	34.533	35.195	0.077381					51	23	3	0	0	0	0.017732	1	6873	6873		74.2	43.563	1	521470			2235	2929	1205	1205	2773	2773		369			-0.038665110166903105
ASSFVFLNL	9	Unmodified	_ASSFVFLNL_					0	0	0		ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2716979980469	2	499.271293	996.528032	0.53201	0.00026562	-0.43703	-0.0002182	0.094985	4.7423E-05	499.27101470655253	87.746	0.70296	87.746	87.439	88.142	0					67	32	3	0	0	0	0.079752	3	23152	23108;23152;23195		41.84	9.5341	1	403230			2236	4798	1206	1206	2774;2775;2776	2775					0.029629555572796562
ASSFVFLNL	9	Unmodified	_ASSFVFLNL_					0	0	0		ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.27142333984375	2	499.271293	996.528032	0.43147	0.00021542	-0.34421	-0.00017185	0.087262	4.3567E-05	499.2711001383401	87.549	0.64613	87.636	87.403	88.05	0.08709					77	34	3	0	0	0	0.041175	2	23103	23103;23149		56.177	16.22	1	744280			2237	4798	1206	1206	2777;2778	2777					0.029629555572796562
ASSFVFLNL	9	Unmodified	_ASSFVFLNL_					0	0	0		ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2713928222656	2	499.271293	996.528032	0.44606	0.0002227	-0.33209	-0.0001658	0.11397	5.69E-05	499.27104511140726	87.684	0.55318	87.679	87.46	88.013	-0.0056229					74	30	3	0	0	0	0.034444	2	23137	23091;23137		58.679	10.333	1	590820			2238	4798	1206	1206	2779;2780	2780					0.029629555572796562
ASSFVFLNL	9	Unmodified	_ASSFVFLNL_					0	0	0		ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	499.271293	996.528032	0.43594	0.00021765	1.3439	0.00067097	1.7798	0.00088862	499.2723617692147	87.99	0.071205	88.079	88.052	88.123	0.089195	0.16637	0.0017619	NaN	41.84	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38641			2239	4798	1206	1206							0.029629555572796562
ASSHVPIQK	9	Unmodified	_ASSHVPIQK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7719421386719	2	483.771991	965.529429	-0.072963	-3.5298E-05	0.36502	0.00017659	0.29206	0.00014129	483.7721029288622	15.065	1.0868	15.065	14.729	15.816	0					85	37	3	0	0	0	0.0024096	1	905	905		106.94	57.007	1	1306200			2240	5350	1207	1207	2781	2781					0.045285896460427466
ASSHVPIQK	9	Unmodified	_ASSHVPIQK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7720031738281	2	483.771991	965.529429	0.020145	9.7458E-06	0.38994	0.00018864	0.41008	0.00019839	483.7720956970107	15.136	1.1928	15.026	14.706	15.899	-0.10982					92	41	3	0	0	0	0.0037449	2	939	939;981		96.367	54.272	1	1209800			2241	5350	1207	1207	2782;2783	2782					0.045285896460427466
ASSHVPIQK	9	Unmodified	_ASSHVPIQK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7720031738281	2	483.771991	965.529429	-0.012712	-6.1495E-06	0.43286	0.00020941	0.42015	0.00020326	483.772107818898	15.179	1.1602	15.114	14.73	15.89	-0.064413					86	39	3	0	0	0	0.0046246	1	950	950		89.401	47.306	1	1366300			2242	5350	1207	1207	2784	2784					0.045285896460427466
ASSINGLFG	9	Unmodified	_ASSINGLFG_					0	0	0			REV__nc|ENSG00000215568|Q2WGN9|GAB4	REV__nc|ENSG00000215568|Q2WGN9|GAB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.88507080078125	2	433.224342	864.434132	-0.21922	-9.4971E-05	1.0821	0.00046879	0.86288	0.00037382	433.2248652867245	17.736	0.86075	17.619	17.323	18.184	-0.11739					57	29	3	0	0	0	0.25202	1	1716	1716		10.824	0.75	1	217700	+		2243	23190	1208	1208	2785	2785					-0.0035076354499778972
ASSINGLFG	9	Unmodified	_ASSINGLFG_					0	0	0			REV__nc|ENSG00000215568|Q2WGN9|GAB4	REV__nc|ENSG00000215568|Q2WGN9|GAB4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	433.224342	864.434132	-0.1679	-7.274E-05	1.3005	0.00056341	1.1326	0.00049067	433.22487188234913	17.727	0.81274	17.666	17.33	18.142	-0.060429	0.048911	9.1057E-05	NaN	10.824	56	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190530	+		2244	23190	1208	1208							-0.0035076354499778972
ASSIPGYNRT	10	Unmodified	_ASSIPGYNRT_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.269775390625	2	533.269813	1064.52507	0.25882	0.00013802	0.23165	0.00012353	0.49047	0.00026155	533.2696870766778	23.733	0.49208	23.66	23.474	23.966	-0.072557					35	16	3	0	0	0	0.39009	1	3582	3582		5.2969	1.1074	1	102790			2245	3681	1209	1209	2786	2786					-0.004609195675357114
ASSLPKNV	8	Unmodified	_ASSLPKNV_					0	0	0			REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.23492431640625	2	408.23471	814.454868	-0.21378	-8.7273E-05	0.7394	0.00030185	0.52562	0.00021457	408.23490261673925	14.945	0.47461	14.836	14.646	15.121	-0.10981					38	16	3	0	0	0	0.41758	1	890	890		16.942	1.0951	1	496310	+		2246	13936	1210	1210	2787	2787					0.04021826834662079
ASSLRQNAI	9	Unmodified	_ASSLRQNAI_					0	0	0			REV__ENST00000542302.6_1_12:1519571-1599393:+|nuORF	REV__ENST00000542302.6_1_12:1519571-1599393:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2669982910156	2	480.267073	958.519593	0.32532	0.00015624	-0.30404	-0.00014602	0.021286	1.0223E-05	480.266856209963	23.629	0.77061	23.59	23.364	24.135	-0.038927					55	26	3	0	0	0	0.18803	1	3547	3547		25.399	1.3787	1	327120	+		2247	22137	1211	1211	2788	2788					0.03867401640661683
ASSSCIRQCRI	11	Unmodified	_ASSSCIRQCRI_					0	0	0		ENST00000568206.1_1_15:28362108-28362639:-|nuORF;ENST00000566635.5_1_15:28356911-28362639:-|nuORF	ENST00000568206.1_1_15:28362108-28362639:-|nuORF	ENST00000568206.1_1_15:28362108-28362639:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.5379943847656	3	408.53763	1222.59106	0.14975	6.1178E-05	-0.5202	-0.00021252	-0.37046	-0.00015134	408.5375628443479	38.571	0.85969	38.669	38.266	39.126	0.097527					99	30	4	0	0	0	0.40332	1	8117	8117		8.7518	3.2285	1	1365700			2248	11984	1212	1212	2789	2789					-0.011331699886341084
ASSTPTPIRK	10	Unmodified	_ASSTPTPIRK_					0	0	0		nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3;nc|ENSG00000133612|Q96P47-3|AGAP3;nc|ENSG00000133612|Q96P47-6|AGAP3;ENST00000486946.1_1_7:150816287-150817669:+|nuORF	nc|ENSG00000133612|Q96P47-5|AGAP3	nc|ENSG00000133612|Q96P47-5|AGAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3033447265625	2	529.303655	1056.59276	0.22436	0.00011876	-0.091344	-4.8349E-05	0.13302	7.0407E-05	529.3034540635393	15.319	0.58176	15.319	15.072	15.654	0					32	19	3	0	0	0	0.40106	1	972	972		3.2813	0.97858	1	96401			2249	3717	1213	1213	2790	2790					0.0667253036326656
ASSTPTPIRK	10	Unmodified	_ASSTPTPIRK_					0	0	0		nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3;nc|ENSG00000133612|Q96P47-3|AGAP3;nc|ENSG00000133612|Q96P47-6|AGAP3;ENST00000486946.1_1_7:150816287-150817669:+|nuORF	nc|ENSG00000133612|Q96P47-5|AGAP3	nc|ENSG00000133612|Q96P47-5|AGAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3032836914062	2	529.303655	1056.59276	0.19633	0.00010392	-0.023172	-1.2265E-05	0.17316	9.1653E-05	529.3035877283047	15.427	0.57177	15.317	15.038	15.61	-0.10981					35	19	3	0	0	0	0.38284	1	1017	1017		6.6304	0.89852	1	91316			2250	3717	1213	1213	2791	2791					0.0667253036326656
ASSTPTPIRK	10	Unmodified	_ASSTPTPIRK_					0	0	0		nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3;nc|ENSG00000133612|Q96P47-3|AGAP3;nc|ENSG00000133612|Q96P47-6|AGAP3;ENST00000486946.1_1_7:150816287-150817669:+|nuORF	nc|ENSG00000133612|Q96P47-5|AGAP3	nc|ENSG00000133612|Q96P47-5|AGAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.303466796875	2	529.303655	1056.59276	0.21041	0.00011137	-0.11655	-6.1688E-05	0.093867	4.9684E-05	529.3035441858734	15.408	0.41554	15.343	15.158	15.573	-0.064413					23	13	2	0	0	0	0.36015	1	1016	1016		10.8	3.1906	1	97118			2251	3717	1213	1213	2792	2792					0.0667253036326656
ASSTRTWKE	9	Unmodified	_ASSTRTWKE_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.270263671875	2	533.269813	1064.52507	0.33188	0.00017698	0.24993	0.00013328	0.58181	0.00031026	533.2700431423539	23.634	0.49498	23.634	23.448	23.943	0					32	16	3	0	0	0	0.29638	1	3541	3541		9.3831	1.2276	1	103350			2252	923	1214	1214	2793	2793					-0.004609195675357114
ASSVPNLK	8	Unmodified	_ASSVPNLK_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.2349548339844	2	408.23471	814.454868	-0.36412	-0.00014865	0.85012	0.00034705	0.486	0.0001984	408.2349572004245	14.879	0.45336	14.879	14.701	15.154	0					35	15	3	0	0	0	0.35947	1	855	855		24.021	0	1	494300			2253	3478	1215	1215	2794	2794					0.040218268346734476
ASSVQFLN	8	Unmodified	_ASSVQFLN_					0	0	0		nc|ENSG00000146453|Q8NA58|PNLDC1;ENSG00000146453|ENST00000392167|PNLDC1	nc|ENSG00000146453|Q8NA58|PNLDC1	nc|ENSG00000146453|Q8NA58|PNLDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.8850402832031	2	433.224342	864.434132	-0.14656	-6.3495E-05	1.1522	0.00049918	1.0057	0.00043568	433.2248323700764	17.567	0.7808	17.567	17.296	18.077	0					57	26	3	0	0	0	0.34272	1	1684	1684		7.9102	0	1	189730			2254	4714	1216	1216	2795	2795					-0.0035076354498642104
ASSYWAVV	8	Unmodified	_ASSYWAVV_					0	0	0			REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	REV__nc|ENSG00000130714|Q9Y6A1-4|POMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7211608886719	2	441.721436	881.428318	0.33761	0.00014913	-0.49156	-0.00021713	-0.15396	-6.8007E-05	441.7211562487365	91.15	0.62205	91.151	90.859	91.481	0.00047302					76	41	2	0	0	0	0.45015	1	24132	24132		5.7604	0	1	1178700	+		2255	15473	1217	1217	2796	2796					-0.017138620566697682
ASTAALPRE	9	Unmodified	_ASTAALPRE_					0	0	0			REV__ENSG00000165804|ENST00000360947|ZNF219	REV__ENSG00000165804|ENST00000360947|ZNF219	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7616882324219	2	458.248349	914.482145	-0.22189	-0.00010168	-0.083253	-3.815E-05	-0.30514	-0.00013983	458.24791817296466	13.233	0.46087	13.133	12.98	13.441	-0.099291					28	15	3	0	0	0	0.25622	1	427	427		7.2892	0	1	71721	+		2256	17268	1218	1218	2797	2797					0.021483103750369992
ASTARHLYL	9	Unmodified	_ASTARHLYL_					0	0	0		ENSG00000105372|ENST00000598742|RPS19;ENST00000457967.1_1_1:113711666-113711915:+|nuORF	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2855224609375	2	516.285266	1030.55598	0.058144	3.0019E-05	-0.17712	-9.1442E-05	-0.11897	-6.1423E-05	516.2850969082814	27.761	0.77276	27.761	27.408	28.181	0					60	26	3	0	0	0	0.03069	2	4727	4727;4775		60.074	40.635	1	624470			2257	1972	1219	1219	2798;2799	2798					0.04192278537357197
ASTARHLYL	9	Unmodified	_ASTARHLYL_					0	0	0		ENSG00000105372|ENST00000598742|RPS19;ENST00000457967.1_1_1:113711666-113711915:+|nuORF	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2853393554688	2	516.285266	1030.55598	-0.061623	-3.1815E-05	-0.046575	-2.4046E-05	-0.1082	-5.5861E-05	516.2851410131302	27.732	0.65782	27.711	27.437	28.095	-0.021412					52	22	3	0	0	0	0.04299	2	4723	4723;4770		55.503	38.416	1	686550			2258	1972	1219	1219	2800;2801	2800					0.04192278537357197
ASTARHLYL	9	Unmodified	_ASTARHLYL_					0	0	0		ENSG00000105372|ENST00000598742|RPS19;ENST00000457967.1_1_1:113711666-113711915:+|nuORF	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2850952148438	2	516.285266	1030.55598	-0.15807	-8.1608E-05	0.17344	8.9547E-05	0.015376	7.9382E-06	516.2852453991411	27.724	0.70444	27.712	27.499	28.203	-0.01156					61	24	4	0	0	0	0.064268	2	4730	4730;4779		47.594	25.401	1	773610			2259	1972	1219	1219	2802;2803	2802					0.04192278537357197
ASTIISSKK	9	Unmodified	_ASTIISSKK_					0	0	0		nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7165222167969	2	467.782025	933.549496	0.073013	3.4154E-05	-0.28507	-0.00013335	-0.21206	-9.9198E-05	467.78195143267027	16.117	0.36777	16.054	15.838	16.205	-0.062534					22	12	3	0	0	0	0.26031	1	1172	1172		3.5965	1.2938	1	28985			2260	2327	1220	1220	2804	2804					0.08006340586007354
ASTILHLVV	9	Unmodified	_ASTILHLVV_					0	0	0		ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.79443359375	2	476.794935	951.575317	-0.22176	-0.00010573	-0.055823	-2.6616E-05	-0.27758	-0.00013235	476.79475826457974	60.191	0.46462	60.191	59.977	60.441	0					47	16	4	0	0	0	0.017871	1	14713	14713		67.344	31.3	1	1900100			2261	3432	1221	1221	2805	2805					0.09759234828288754
ASTILHLVV	9	Unmodified	_ASTILHLVV_					0	0	0		ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7945861816406	2	476.794935	951.575317	-0.42683	-0.00020351	0.27955	0.00013329	-0.14729	-7.0226E-05	476.79492484919325	60.114	0.49047	60.21	59.932	60.422	0.095093					44	17	3	0	0	0	0.037693	1	14687	14687		57.471	28.985	1	1706300			2262	3432	1221	1221	2806	2806					0.09759234828288754
ASTILHLVV	9	Unmodified	_ASTILHLVV_					0	0	0		ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.7947082519531	2	476.794935	951.575317	0.058992	2.8127E-05	-0.23668	-0.00011285	-0.17769	-8.4721E-05	476.7947200854573	60.158	0.6035	60.147	59.94	60.544	-0.011486					49	21	3	0	0	0	0.037693	1	14702	14702		57.471	15.377	1	1831600			2263	3432	1221	1221	2807	2807					0.09759234828288754
ASTLHPPT	8	Unmodified	_ASTLHPPT_					0	0	0			REV__nc|ENSG00000197183|Q96MY1-2|NOL4L	REV__nc|ENSG00000197183|Q96MY1-2|NOL4L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.52911376953125	2	412.21906	822.423567	-0.23522	-9.6962E-05	3.0198	0.0012448	2.7845	0.0011478	412.2205936687531	18.971	1.5074	18.971	18.479	19.986	0					66	53	2	0	0	0	0.34131	1	2079	2079		12.532	2.3482	1	95132	+		2264	18719	1222	1222	2808	2808					0.005252538005606766
ASTLQSSYQI	10	Unmodified	_ASTLQSSYQI_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.26123046875	2	549.277303	1096.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.588	1	75.588	75.088	76.088	0								0	0	0	0.33945	1	19428	19428		19.257	2.1441	1				2265	624	1223	1223	2809	2809					-0.0043547249019866285
ASTLQSSYQI	10	Unmodified	_ASTLQSSYQI_					0	0	0		ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	ENSG00000046604|ENST00000261590|DSG2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.26123046875	2	549.277303	1096.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.64	1	75.608	75.108	76.108	-0.031487								0	0	0	0.33945	1	19429	19429		19.257	2.1441	1				2266	624	1223	1223	2810	2810					-0.0043547249019866285
ASTLRKKH	8	Unmodified	_ASTLRKKH_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.80035400390625	2	470.787976	939.561398	-0.048295	-2.2737E-05	-0.58099	-0.00027352	-0.62929	-0.00029626	470.78798877127866	17.194	1.4945	17.077	16.772	18.267	-0.11739					155	52	6	0	0	0	0.44389	1	1780	1780		7.9102	0	1	6278200			2267	12552	1224	1224	2811	2811					0.08920002119850778
ASTQEKNPR	9	Unmodified	_ASTQEKNPR_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2486572265625	2	515.767437	1029.52032	0.022285	1.1494E-05	-0.25638	-0.00013223	-0.2341	-0.00012074	515.7673290476454	14.328	0.5358	14.328	14.113	14.649	0					24	18	2	0	0	0	0.26031	1	723	723		3.5965	0.31518	1	76319			2268	420	1225	1225	2812	2812					0.0067419628969673795
ASTTRERSSA	10	Unmodified	_ASTTRERSSA_					0	0	0			REV__ENST00000461778.5_1_11:47280767-47282818:+|nuORF	REV__ENST00000461778.5_1_11:47280767-47282818:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2659301757812	2	533.267801	1064.52105	0.13882	7.4029E-05	2.0247	0.0010797	2.1635	0.0011538	533.2687018934611	15.928	0.73307	15.813	15.486	16.219	-0.11434					53	24	3	0	0	0	0.36368	1	1124	1124		10.151	3.9448	1	232540	+		2269	21224	1226	1226	2813	2813					-0.008630090612314234
ASTVLIRFK	9	Unmodified	_ASTVLIRFK_					0	0	0			REV__ENST00000300589.6_1_16:50766247-50766409:+|nuORF	REV__ENST00000300589.6_1_16:50766247-50766409:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8073120117188	2	517.821484	1033.62842	0.51069	0.00026444	-0.2514	-0.00013018	0.25929	0.00013426	517.8211716061829	37.895	0.21123	37.895	37.795	38.007	0					11	7	2	0	0	0	0.29176	1	7859	7859		10.074	1.4806	1	95897	+		2270	19814	1227	1227	2814	2814					0.1129461261095912
ASTVLIRFK	9	Unmodified	_ASTVLIRFK_					0	0	0			REV__ENST00000300589.6_1_16:50766247-50766409:+|nuORF	REV__ENST00000300589.6_1_16:50766247-50766409:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	517.821484	1033.62842	0.51069	0.00026444	-0.2514	-0.00013018	0.25929	0.00013426	517.8211716061829	37.895	0.21123	37.895	37.795	38.007	0	0.092645	-0.0012086	NaN	10.074	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95897	+		2271	19814	1227	1227							0.1129461261095912
ASTVLIRFK	9	Unmodified	_ASTVLIRFK_					0	0	0			REV__ENST00000300589.6_1_16:50766247-50766409:+|nuORF	REV__ENST00000300589.6_1_16:50766247-50766409:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	517.821484	1033.62842	0.27614	0.00014299	2.3721	0.0012283	2.6482	0.0013713	517.8222268241074	37.614	0.085312	37.71	37.652	37.738	0.095284	-0.092645	0.0015084	NaN	10.074	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53406	+		2272	19814	1227	1227							0.1129461261095912
ASVAWAVLK	9	Unmodified	_ASVAWAVLK_					0	0	0		ENSG00000283378|ENST00000636699|CNTNAP3C;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3	ENSG00000283378|ENST00000636699|CNTNAP3C	ENSG00000283378|ENST00000636699|CNTNAP3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7823181152344	2	472.781828	943.549102	0.051038	2.413E-05	0.98294	0.00046471	1.034	0.00048884	472.78214889572916	52.002	0.64971	52.002	51.759	52.408	0					49	23	3	0	0	0	0.0013683	1	12185	12185		118.07	61.891	1	700790			2273	2097	1228	1228	2815	2815					0.07506965656796183
ASVAWAVLK	9	Unmodified	_ASVAWAVLK_					0	0	0		ENSG00000283378|ENST00000636699|CNTNAP3C;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3	ENSG00000283378|ENST00000636699|CNTNAP3C	ENSG00000283378|ENST00000636699|CNTNAP3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7823791503906	2	472.781828	943.549102	0.22802	0.0001078	0.91401	0.00043213	1.142	0.00053993	472.78211031553974	51.938	0.55186	51.989	51.758	52.309	0.050571					41	19	4	0	0	0	0.0024096	1	12166	12166		106.94	50.763	1	621330			2274	2097	1228	1228	2816	2816					0.07506965656796183
ASVAWAVLK	9	Unmodified	_ASVAWAVLK_					0	0	0		ENSG00000283378|ENST00000636699|CNTNAP3C;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000154529|ENST00000377561|CNTNAP3B;ENSG00000106714|ENST00000297668|CNTNAP3	ENSG00000283378|ENST00000636699|CNTNAP3C	ENSG00000283378|ENST00000636699|CNTNAP3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7820129394531	2	472.781828	943.549102	0.027202	1.286E-05	0.66751	0.00031559	0.69471	0.00032845	472.7819833033656	52.094	0.7618	52.093	51.848	52.61	-0.00080872					50	27	3	0	0	0	0.0024096	1	12198	12198		106.94	50.763	1	640950			2275	2097	1228	1228	2817	2817					0.07506965656796183
ASVDKVLEL	9	Unmodified	_ASVDKVLEL_					0	0	0		nc|ENSG00000152795|O14979-3|HNRNPDL;nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.2817687988281	2	487.281857	972.549162	0.27112	0.00013211	-0.31836	-0.00015513	-0.047232	-2.3015E-05	487.28155525822393	51.76	1.002	51.76	51.406	52.408	0					134	36	5	0	0	0	0.00024732	2	12131	12131;12181		132.38	36.013	1	9565000			2276	5042	1229	1229	2818;2819	2818					0.061789208661252815
ASVDKVLEL	9	Unmodified	_ASVDKVLEL_					0	0	0		nc|ENSG00000152795|O14979-3|HNRNPDL;nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.28155517578125	2	487.281857	972.549162	0.29498	0.00014374	-0.39935	-0.00019459	-0.10437	-5.0858E-05	487.28154397630897	51.747	1.0905	51.793	51.429	52.519	0.046574					124	39	5	0	0	0	0.00024732	2	12110	12110;12161		132.38	46.048	1	10954000			2277	5042	1229	1229	2820;2821	2820					0.061789208661252815
ASVDKVLEL	9	Unmodified	_ASVDKVLEL_					0	0	0		nc|ENSG00000152795|O14979-3|HNRNPDL;nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.28179931640625	2	487.281857	972.549162	0.15005	7.3116E-05	-0.032438	-1.5807E-05	0.11761	5.731E-05	487.2816881324043	51.812	1.4296	51.812	51.442	52.872	-0.00081253					151	52	5	0	0	0	0.00024732	2	12133	12133;12183		132.38	46.048	1	10359000			2278	5042	1229	1229	2822;2823	2822					0.061789208661252815
ASVFGTMPLK	10	Oxidation (M)	_ASVFGTM(Oxidation (M))PLK_		ASVFGTM(1)PLK		ASVFGTM(97)PLK	0	0	1		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2922973632812	2	533.78371	1065.55287	0.43246	0.00023084	-0.5505	-0.00029385	-0.11804	-6.3007E-05	533.783582172842	42.126	1.0374	42.212	41.824	42.861	0.085197					89	37	5	0	0	0	0.0096682	1	9154	9154		96.936	32.975	1	2544700			2279	4955	1230	1230	2824	2824		611			0.022712673683372486
ASVFGTMPLK	10	Oxidation (M)	_ASVFGTM(Oxidation (M))PLK_		ASVFGTM(1)PLK		ASVFGTM(100)PLK	0	0	1		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2922973632812	2	533.78371	1065.55287	0.61593	0.00032877	-0.80091	-0.00042751	-0.18498	-9.874E-05	533.783404708611	42.066	1.1434	42.158	41.784	42.928	0.091362					96	40	5	0	0	0	0.012011	1	9114	9114		103.82	37.367	1	2676600			2280	4955	1230	1230	2825	2825		611			0.022712673683372486
ASVFVKLQK	9	Unmodified	_ASVFVKLQK_					0	0	0		nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13;ENST00000495652.1_1_22:41231562-41231847:-|nuORF;ENST00000456632.1_1_X:92543289-92543514:-|nuORF;nc|ENSG00000232150|Q8IZP2|ST13P4	nc|ENSG00000212789|Q8NFI4|ST13P5	nc|ENSG00000212789|Q8NFI4|ST13P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.31610107421875	2	510.316035	1018.61752	0.58346	0.00029775	0.32388	0.00016528	0.90734	0.00046303	510.3157710398927	32.525	0.61399	32.525	32.251	32.865	0					60	21	4	0	0	0	0.011693	1	6211	6211		76.825	15.467	1	515450			2281	1584	1231	1231	2826	2826					0.10895210236674302
ASVFVKLQK	9	Unmodified	_ASVFVKLQK_					0	0	0		nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13;ENST00000495652.1_1_22:41231562-41231847:-|nuORF;ENST00000456632.1_1_X:92543289-92543514:-|nuORF;nc|ENSG00000232150|Q8IZP2|ST13P4	nc|ENSG00000212789|Q8NFI4|ST13P5	nc|ENSG00000212789|Q8NFI4|ST13P5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.80810546875	2	510.316035	1018.61752	0.55685	0.00028417	0.43794	0.00022349	0.99479	0.00050766	510.31588338173435	32.403	0.55202	32.459	32.206	32.758	0.055309					50	19	3	0	0	0	0.11018	1	6146	6146		53.404	19.002	1	556300			2282	1584	1231	1231	2827	2827					0.10895210236674302
ASVFVKLQK	9	Unmodified	_ASVFVKLQK_					0	0	0		nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13;ENST00000495652.1_1_22:41231562-41231847:-|nuORF;ENST00000456632.1_1_X:92543289-92543514:-|nuORF;nc|ENSG00000232150|Q8IZP2|ST13P4	nc|ENSG00000212789|Q8NFI4|ST13P5	nc|ENSG00000212789|Q8NFI4|ST13P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.316162109375	2	510.316035	1018.61752	0.28283	0.00014433	0.65279	0.00033313	0.93562	0.00047746	510.31593322700803	32.387	0.59469	32.441	32.223	32.818	0.054371					59	21	4	0	0	0	0.032589	1	6188	6188		59.368	7.1	1	560650			2283	1584	1231	1231	2828	2828					0.10895210236674302
ASVGEWPEF	9	Unmodified	_ASVGEWPEF_					0	0	0		nc|ENSG00000075035|Q2TBF2-2|WSCD2	nc|ENSG00000075035|Q2TBF2-2|WSCD2	nc|ENSG00000075035|Q2TBF2-2|WSCD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.8009338378906	2	511.234907	1020.45526	0.31354	0.00016029	-1.6242	-0.00083037	-1.3107	-0.00067008	511.2337141928639	38.558	0.38511	38.656	38.348	38.733	0.097527					20	13	2	0	0	0	0.22596	1	7985	7985		15.847	1.9411	1	122780			2284	12586	1232	1232	2829	2829					-0.05414798236142815
ASVHQATK	8	Unmodified	_ASVHQATK_					0	0	0		ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2561950683594	2	421.229959	840.445365	-0.17688	-7.4509E-05	-0.11882	-5.005E-05	-0.2957	-0.00012456	421.2298701681303	15.9	0.28705	15.787	15.665	15.952	-0.11253					15	9	2	0	0	0	0.34131	1	1214	1214		12.532	0	1	25541			2285	8162	1233	1233	2830	2830					0.018760585491349957
ASVLLPHLS	9	Unmodified	_ASVLLPHLS_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.76641845703125	2	468.779285	935.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.857	1	27.845	27.345	28.345	-0.01228								0	0	0	0.23852	1	4786	4786		10.074	2.465	1		+		2286	15358	1234	1234	2831	2831					0.07366661794185347
ASVLQRRSPN	10	Unmodified	_ASVLQRRSPN_					0	0	0		ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000188191|ENST00000537384|PRKAR1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.290283203125	2	564.317628	1126.6207	0.38215	0.00021565	1.6788	0.00094737	2.0609	0.001163	564.3185741599799	45.07	0.61874	45.146	44.935	45.554	0.075047					27	22	2	0	0	0	0.31629	1	9976	9976		10.074	0	1	191190			2287	7737	1235	1235	2832	2832					0.06245853343375529
ASVLRRSKLH	10	Unmodified	_ASVLRRSKLH_					0	0	0			REV__nc|ENSG00000165525|O60524-5|NEMF	REV__nc|ENSG00000165525|O60524-5|NEMF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.8591918945312	2	583.859464	1165.70437	0.40955	0.00023912	-2.2626	-0.001321	-1.853	-0.0010819	583.8589009915867	88.486	2.2643	88.483	87.246	89.51	-0.0028381					270	111	4	0	0	0	0.31867	1	23400	23400		18.146	7.3468	1	1198200	+		2288	17243	1236	1236	2833	2833					0.1281500951106409
ASVLRRSKLH	10	Unmodified	_ASVLRRSKLH_					0	0	0			REV__nc|ENSG00000165525|O60524-5|NEMF	REV__nc|ENSG00000165525|O60524-5|NEMF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	583.859464	1165.70437	0.4523	0.00026408	-1.2788	-0.00074662	-0.82646	-0.00048254	583.8587895965783	88.516	1.209	88.516	88.098	89.307	0	0.027751	6.9374E-05	NaN	18.146	159	58	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	896190	+		2289	17243	1236	1236							0.1281500951106409
ASVLRRSKLH	10	Unmodified	_ASVLRRSKLH_					0	0	0			REV__nc|ENSG00000165525|O60524-5|NEMF	REV__nc|ENSG00000165525|O60524-5|NEMF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	583.859464	1165.70437	0.34029	0.00019868	-1.5905	-0.00092865	-1.2503	-0.00072997	583.8589150555797	88.376	1.2163	88.465	87.95	89.166	0.089195	-0.022786	-0.00029469	NaN	18.146	180	55	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1672300	+		2290	17243	1236	1236							0.1281500951106409
ASVMHNLIIVF	11	Unmodified	_ASVMHNLIIVF_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3474731445312	2	622.347009	1242.67946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.085	1	84.085	83.585	84.585	0								0	0	0	0.36335	1	22026	22026		5.2969	0.39987	1		+		2291	16681	1237	1237	2834	2834					0.0678319359346915
ASVNERLLYSV	11	Unmodified	_ASVNERLLYSV_					0	0	0			REV__nc|ENSG00000066230|P48764-2|SLC9A3	REV__nc|ENSG00000066230|P48764-2|SLC9A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9145202636719	3	417.562827	1249.66665	-0.023108	-9.649E-06	-1.3049	-0.00054487	-1.328	-0.00055452	417.56202782177576	16.649	0.30062	16.535	16.395	16.695	-0.11434					18	10	2	0	0	0	0.33207	1	1359	1359		5.5233	1.6774	1	22221	+		2292	13678	1238	1238	2835	2835					0.0518045373496534
ASVNTLVNK	9	Unmodified	_ASVNTLVNK_					0	0	0		nc|ENSG00000164144|P53367-3|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1;ARFIP1|p.K353Nfs*7|1|0.18|ENSG00000164144|chr4:152910152-152910152|T/-|frameshift_variant;ENSG00000164144|ENST00000353617|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.2718811035156	2	473.271824	944.529095	0.01002	4.742E-06	-0.092076	-4.3577E-05	-0.082056	-3.8835E-05	473.2717903158014	27.136	0.85928	27.136	26.841	27.7	0					66	29	3	0	0	0	0.0010968	1	4559	4559		121.53	39.644	1	426560			2293	51	1239	1239	2836	2836					0.05461169926184084
ASVNTLVNK	9	Unmodified	_ASVNTLVNK_					0	0	0		nc|ENSG00000164144|P53367-3|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1;ARFIP1|p.K353Nfs*7|1|0.18|ENSG00000164144|chr4:152910152-152910152|T/-|frameshift_variant;ENSG00000164144|ENST00000353617|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.2717590332031	2	473.271824	944.529095	0.064757	3.0648E-05	0.024001	1.1359E-05	0.088758	4.2007E-05	473.2718257152179	27.085	0.79899	27.064	26.788	27.587	-0.021412					62	27	3	0	0	0	0.0016724	1	4562	4562		114.19	43.053	1	445940			2294	51	1239	1239	2837	2837					0.05461169926184084
ASVNTLVNK	9	Unmodified	_ASVNTLVNK_					0	0	0		nc|ENSG00000164144|P53367-3|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1;ARFIP1|p.K353Nfs*7|1|0.18|ENSG00000164144|chr4:152910152-152910152|T/-|frameshift_variant;ENSG00000164144|ENST00000353617|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.2718811035156	2	473.271824	944.529095	0.15927	7.5379E-05	-0.57892	-0.00027399	-0.41964	-0.00019861	473.27144778629685	27.088	0.95503	27.076	26.797	27.752	-0.01156					72	33	3	0	0	0	0.0013924	1	4562	4562		117.76	39.033	1	501400			2295	51	1239	1239	2838	2838					0.05461169926184084
ASVSVWPKL	9	Unmodified	_ASVSVWPKL_					0	0	0			REV__ENST00000594581.5_1_19:47228956-47229229:-|nuORF	REV__ENST00000594581.5_1_19:47228956-47229229:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7869873046875	2	493.78711	985.559667	0.695	0.00034318	-0.15768	-7.7861E-05	0.53732	0.00026532	493.7869858477701	50.936	1.5886	50.936	49.976	51.565	0					136	58	3	0	0	0	0.057976	1	11912	11912		49.933	17.628	1	1328400	+		2296	22587	1240	1240	2839	2839					0.06630948311226348
ASVSVWPKL	9	Unmodified	_ASVSVWPKL_					0	0	0			REV__ENST00000594581.5_1_19:47228956-47229229:-|nuORF	REV__ENST00000594581.5_1_19:47228956-47229229:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	493.78711	985.559667	0.75256	0.00037161	-0.28074	-0.00013863	0.47182	0.00023298	493.78697927714376	50.927	1.6883	50.973	49.933	51.621	0.046574	0.0031177	-4.9491E-05	NaN	49.933	136	62	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1432900	+		2297	22587	1240	1240							0.06630948311226348
ASVVTVLRV	9	Unmodified	_ASVVTVLRV_					0	0	0		nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000565325.5_1_15:73854253-73925580:-|nuORF;nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN	nc|ENSG00000156642|Q9Y639-5|NPTN	nc|ENSG00000156642|Q9Y639-5|NPTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7823791503906	2	472.300384	942.586216	0.21281	0.00010051	1.7711	0.00083648	1.9839	0.00093699	472.30113122938377	51.855	0.38722	51.906	51.729	52.116	0.050571					24	13	2	0	0	0	0.1645	1	12166	12166		40.239	13.971	1	413140			2298	5246	1241	1241	2840	2840					0.112626372025602
ASVVTVLRV	9	Unmodified	_ASVVTVLRV_					0	0	0		nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000565325.5_1_15:73854253-73925580:-|nuORF;nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN	nc|ENSG00000156642|Q9Y639-5|NPTN	nc|ENSG00000156642|Q9Y639-5|NPTN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	472.300384	942.586216	0.057055	2.6947E-05	1.9469	0.00091952	2.004	0.00094647	472.3013000805138	51.889	0.44875	51.889	51.702	52.151	0	-0.023306	0.00021529	NaN	59.368	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378580			2299	5246	1241	1241							0.112626372025602
ASVWKRKRMD	10	Unmodified	_ASVWKRKRMD_					0	0	0		nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-5|MAEA;nc|ENSG00000090316|Q7L5Y9-4|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	nc|ENSG00000090316|Q7L5Y9-3|MAEA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.775146484375	3	426.23628	1275.68701	-0.16842	-7.1789E-05	-1.4485	-0.00061741	-1.6169	-0.0006892	426.2353683830491	33.915	0.38842	33.981	33.739	34.127	0.066704					19	13	2	0	0	0	0.31969	1	6598	6598		3.3196	1.4133	1	119810			2300	1373	1242	1242	2841	2841					0.0601934591375084
ASWSQCEKWS	10	Unmodified	_ASWSQCEKWS_					0	0	0			REV__ENST00000359491.1_1_14:64804837-64805239:-|nuORF	REV__ENST00000359491.1_1_14:64804837-64805239:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5570068359375	3	404.509846	1210.50771	-0.34878	-0.00014108	3.0101	0.0012176	2.6613	0.0010765	404.5107174221091	23.104	0.61363	23.017	22.628	23.242	-0.087608					40	19	3	0	0	0	0.32054	1	3366	3366		1.5923	0	1	31483	+		2301	20244	1243	1243	2842	2842					-0.08912583164828902
ASYAAVPLYR	10	Unmodified	_ASYAAVPLYR_					0	0	0		ENST00000489116.1_1_6:28415047-28415581:+|nuORF;nc|ENSG00000166260|Q9Y6N1-2|COX11;ENSG00000166260|ENST00000299335|COX11	ENST00000489116.1_1_6:28415047-28415581:+|nuORF	ENST00000489116.1_1_6:28415047-28415581:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.80029296875	2	555.800749	1109.58694	0.21804	0.00012119	-0.36893	-0.00020505	-0.15089	-8.3863E-05	555.8000831696924	46.166	0.44211	46.231	46.008	46.45	0.065048					39	15	4	0	0	0	0.0036108	1	10372	10372		99.755	70.674	1	898160			2302	6051	1244	1244	2843	2843					0.03653431851603273
ASYATIILSK	10	Unmodified	_ASYATIILSK_					0	0	0		ENSG00000008394|ENST00000396210|MGST1;ENST00000537878.5_1_12:16500588-16507345:+|nuORF;nc|ENSG00000008394|P10620-2|MGST1;ENST00000539708.5_1_12:16507186-16513330:+|nuORF;ENST00000539036.5_1_12:16500588-16536519:+|nuORF;ENST00000538857.1_1_12:16507186-16536519:+|nuORF	ENSG00000008394|ENST00000396210|MGST1	ENSG00000008394|ENST00000396210|MGST1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.8109741210938	2	533.810782	1065.60701	0.65991	0.00035227	0.11876	6.3398E-05	0.77867	0.00041566	533.8106744287413	50.216	0.86894	50.216	49.923	50.792	0					87	31	4	0	0	0	0.0001581	1	11627	11627		128.93	102.66	1	4518200			2303	396	1245	1245	2844	2844					0.07683182791561194
ASYATIILSK	10	Unmodified	_ASYATIILSK_					0	0	0		ENSG00000008394|ENST00000396210|MGST1;ENST00000537878.5_1_12:16500588-16507345:+|nuORF;nc|ENSG00000008394|P10620-2|MGST1;ENST00000539708.5_1_12:16507186-16513330:+|nuORF;ENST00000539036.5_1_12:16500588-16536519:+|nuORF;ENST00000538857.1_1_12:16507186-16536519:+|nuORF	ENSG00000008394|ENST00000396210|MGST1	ENSG00000008394|ENST00000396210|MGST1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7883911132812	2	533.810782	1065.60701	0.82462	0.00044019	-0.07477	-3.9913E-05	0.74985	0.00040028	533.8105993923904	50.158	0.83537	50.203	49.957	50.792	0.044891					99	30	4	0	0	0	6.7032E-13	1	11601	11601		182.24	136.54	1	4830700			2304	396	1245	1245	2845	2845					0.07683182791561194
ASYATIILSK	10	Unmodified	_ASYATIILSK_					0	0	0		ENSG00000008394|ENST00000396210|MGST1;ENST00000537878.5_1_12:16500588-16507345:+|nuORF;nc|ENSG00000008394|P10620-2|MGST1;ENST00000539708.5_1_12:16507186-16513330:+|nuORF;ENST00000539036.5_1_12:16500588-16536519:+|nuORF;ENST00000538857.1_1_12:16507186-16536519:+|nuORF	ENSG00000008394|ENST00000396210|MGST1	ENSG00000008394|ENST00000396210|MGST1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.8108520507812	2	533.810782	1065.60701	0.98004	0.00052316	-0.28584	-0.00015258	0.6942	0.00037057	533.8104646588887	50.221	1.0155	50.242	49.909	50.924	0.020691					104	37	4	0	0	0	0.0001581	1	11615	11615		117.76	91.492	1	4683100			2305	396	1245	1245	2846	2846					0.07683182791561194
ASYCMASSL	9	Oxidation (M)	_ASYCM(Oxidation (M))ASSL_		ASYCM(1)ASSL		ASYCM(48)ASSL	0	0	1			REV__nc|ENSG00000152822|Q13255-2|GRM1	REV__nc|ENSG00000152822|Q13255-2|GRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.6935119628906	2	474.693703	947.372854	0.27706	0.00013152	-0.47698	-0.00022642	-0.19992	-9.4901E-05	474.69340140256674	40.916	0.63269	41.008	40.798	41.431	0.09267					34	23	2	0	0	0	0.062246	1	8805	8805		48.346	6.2513	1	397070	+		2306	16600	1246	1246	2847	2847		1001			-0.10293779630944755
ASYCMASSL	9	Oxidation (M)	_ASYCM(Oxidation (M))ASSL_					0	0	1			REV__nc|ENSG00000152822|Q13255-2|GRM1	REV__nc|ENSG00000152822|Q13255-2|GRM1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	474.693703	947.372854	-0.078202	-3.7122E-05	0.071507	3.3944E-05	-0.0066952	-3.1782E-06	474.6936527136435	41.148	0.53862	41.148	40.902	41.441	0	0.10359	0.00024116	NaN	48.346	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437250	+		2307	16600	1246	1246				1001			-0.10293779630944755
ASYCMASSL	9	Oxidation (M)	_ASYCM(Oxidation (M))ASSL_					0	0	1			REV__nc|ENSG00000152822|Q13255-2|GRM1	REV__nc|ENSG00000152822|Q13255-2|GRM1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	474.693703	947.372854	0.27706	0.00013152	-0.47698	-0.00022642	-0.19992	-9.4901E-05	474.69340140256674	40.916	0.63269	41.008	40.798	41.431	0.09267	-0.035973	-0.00027956	NaN	48.346	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397070	+		2308	16600	1246	1246				1001			-0.10293779630944755
ASYCMASSL	9	Oxidation (M)	_ASYCM(Oxidation (M))ASSL_					0	0	1			REV__nc|ENSG00000152822|Q13255-2|GRM1	REV__nc|ENSG00000152822|Q13255-2|GRM1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	474.693703	947.372854	0.040065	1.9019E-05	-0.23534	-0.00011171	-0.19527	-9.2695E-05	474.693574601398	40.878	0.59201	40.977	40.724	41.316	0.099022	-0.067613	-5.0157E-05	NaN	48.346	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	468160	+		2309	16600	1246	1246				1001			-0.10293779630944755
ASYDYVRRRL	10	Unmodified	_ASYDYVRRRL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.9127197265625	3	433.570316	1297.68912	-0.25634	-0.00011114	0.16992	7.3673E-05	-0.086414	-3.7467E-05	433.57039741641927	15.012	0.56403	14.902	14.587	15.151	-0.10981					44	19	3	0	0	0	0.36786	1	900	900		8.4443	2.2099	1	177070			2310	12859	1247	1247	2848	2848					0.05218097923216192
ASYDYVRRRL	10	Unmodified	_ASYDYVRRRL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	433.570316	1297.68912	-0.37413	-0.00016221	0.11765	5.1008E-05	-0.25649	-0.00011121	433.57046616597233	15.068	0.95551	15.004	14.589	15.545	-0.064414	0.073368	-8.1533E-05	NaN	8.4443	58	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157420			2311	12859	1247	1247							0.05218097923216192
ASYGVSKGK	9	Unmodified	_ASYGVSKGK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7451171875	2	448.745442	895.476331	-0.15625	-7.0115E-05	-0.55362	-0.00024843	-0.70987	-0.00031855	448.7451622216082	13.084	0.34812	12.984	12.869	13.217	-0.09929					27	11	3	0	0	0	0.1426	1	325	325		32.037	12.78	1	193220			2312	5063	1248	1248	2849	2849					0.024412118633904356
ASYGVSKGK	9	Unmodified	_ASYGVSKGK_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7450256347656	2	448.745442	895.476331	-0.17698	-7.942E-05	-0.89261	-0.00040055	-1.0696	-0.00047997	448.74501224685474	13.042	0.39435	12.974	12.851	13.245	-0.067495					28	13	3	0	0	0	0.29124	1	317	317		10.151	6.2062	1	195170			2313	5063	1248	1248	2850	2850					0.024412118633904356
ASYHGFNL	8	Unmodified	_ASYHGFNL_					0	0	0		ENSG00000156886|ENST00000389202|ITGAD	ENSG00000156886|ENST00000389202|ITGAD	ENSG00000156886|ENST00000389202|ITGAD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.7167663574219	2	454.716685	907.418816	0.046095	2.096E-05	0.686	0.00031194	0.73209	0.0003329	454.7170799026091	80.416	0.64218	80.481	80.264	80.906	0.065094					37	24	2	0	0	0	0.45169	1	20894	20894		5.2307	0	1	321420			2314	5264	1249	1249	2851	2851					-0.03859630342185483
ASYTKALKL	9	Unmodified	_ASYTKALKL_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7876892089844	2	497.800217	993.585882	-0.17179	-8.5518E-05	-0.31121	-0.00015492	-0.483	-0.00024044	497.800085571755	34.418	0.39845	34.418	34.22	34.618	0					32	13	3	0	0	0	0.15763	1	6773	6773		29.841	6.6922	1	198780			2315	62	1250	1250	2852	2852					0.0888321748270755
ASYTKALKL	9	Unmodified	_ASYTKALKL_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7876281738281	2	497.800217	993.585882	-0.11779	-5.8636E-05	-0.43122	-0.00021466	-0.54901	-0.0002733	497.80003614219004	34.275	0.47221	34.342	34.149	34.622	0.06636					35	16	3	0	0	0	0.15763	1	6723	6723		29.841	15.002	1	225300			2316	62	1250	1250	2853	2853					0.0888321748270755
ASYTKALKL	9	Unmodified	_ASYTKALKL_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.78765869140625	2	497.800217	993.585882	0.12412	6.1786E-05	-0.68793	-0.00034245	-0.56382	-0.00028067	497.7998637196289	34.187	0.50343	34.253	34.047	34.55	0.066704					29	17	2	0	0	0	0.059067	1	6720	6720		49.527	27.781	1	243640			2317	62	1250	1250	2854	2854					0.0888321748270755
ASYVASTKYQK	11	Unmodified	_ASYVASTKYQK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.88739013671875	3	415.88731	1244.6401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.056	1	20.056	19.556	20.556	0								0	0	0	0.33955	1	2421	2421		10.527	2.5821	1				2318	620	1251	1251	2855	2855					0.027567648436161107
ASYVASTKYQK	11	Unmodified	_ASYVASTKYQK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.328369140625	2	623.327328	1244.6401	0.22426	0.00013979	0.97025	0.00060478	1.1945	0.00074457	623.3279732568503	20.295	0.27992	20.185	20.016	20.296	-0.11003					15	10	2	0	0	0	0.40129	2	2520	2483;2520		9.544	5.0151	1	89639			2319	620	1251	1251	2856;2857	2857					0.027567648436161107
ASYVASTKYQK	11	Unmodified	_ASYVASTKYQK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.328125	2	623.327328	1244.6401	0.4608	0.00028723	0.44749	0.00027893	0.90829	0.00056616	623.3275689536241	20.19	0.24585	20.134	19.953	20.199	-0.055693					12	8	2	0	0	0	0.35732	1	2475	2475		15.739	8.1297	1	117110			2320	620	1251	1251	2858	2858					0.027567648436161107
ASYVASTKYQK	11	Unmodified	_ASYVASTKYQK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.8872985839844	3	415.88731	1244.6401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.147	1	20.091	19.591	20.591	-0.055693								0	0	0	0.33955	1	2447	2447		10.527	3.4904	1				2321	620	1251	1251	2859	2859					0.027567648436161107
ASYYLAVFY	9	Unmodified	_ASYYLAVFY_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.30810546875	2	548.771126	1095.5277	0.49707	0.00027278	0.78957	0.0004333	1.2866	0.00070608	548.7712850283458	82.403	0.30856	82.476	82.293	82.601	0.073097					18	12	2	0	0	0	0.22596	1	21498	21498		21.747	5.8995	1	114380			2322	1403	1252	1252	2860	2860					-0.016244641625689837
ASYYLAVFY	9	Unmodified	_ASYYLAVFY_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.30810546875	2	548.771126	1095.5277	0.58722	0.00032225	-0.051426	-2.8221E-05	0.5358	0.00029403	548.7708548284849	82.432	0.41672	82.411	82.302	82.719	-0.020584					20	16	2	0	0	0	0.19839	1	21515	21515		28.487	7.6156	1	171890			2323	1403	1252	1252	2861	2861					-0.016244641625689837
ATAAAIGATPR	11	Unmodified	_ATAAAIGATPR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.28265380859375	2	500.282723	998.550893	0.23753	0.00011883	0.31282	0.0001565	0.55035	0.00027533	500.28281009056576	25.514	0.55986	25.514	25.239	25.798	0					41	18	3	0	0	0	2.3802E-05	1	4116	4116		111.31	59.894	1	508220			2324	4052;11723	1253	1253	2862	2862					0.05155974674744357
ATAAAIGATPR	11	Unmodified	_ATAAAIGATPR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2828674316406	2	500.282723	998.550893	0.071874	3.5957E-05	0.55349	0.0002769	0.62536	0.00031286	500.282876581877	25.505	0.60948	25.449	25.186	25.796	-0.055931					43	20	3	0	0	0	3.512E-18	2	4058	4058;4107		190.03	106.6	1	622330			2325	4052;11723	1253	1253	2863;2864	2863					0.05155974674744357
ATAAAIGATPR	11	Unmodified	_ATAAAIGATPR_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2828369140625	2	500.282723	998.550893	0.028248	1.4132E-05	0.53491	0.00026761	0.56316	0.00028174	500.2828935697543	25.528	0.58395	25.496	25.181	25.764	-0.03141					44	20	3	0	0	0	1.859E-13	2	4061	4061;4107		177.58	95.662	1	593650			2326	4052;11723	1253	1253	2865;2866	2865					0.05155974674744357
ATAAEEREA	9	Unmodified	_ATAAEEREA_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.76397705078125	2	474.225071	946.435589	0.11182	5.3028E-05	-0.2109	-0.00010001	-0.099075	-4.6984E-05	474.2249015177811	22.372	0.76239	22.272	22.045	22.807	-0.10034					39	27	2	0	0	0	0.24913	1	3082	3082		12.532	0	1	81806			2327	4052	1254	1254	2867	2867					-0.03977174246904269
ATAALSPQEK	10	Unmodified	_ATAALSPQEK_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2754821777344	2	508.274564	1014.53457	0.30482	0.00015493	0.17791	9.0426E-05	0.48272	0.00024536	508.27444388589015	20.161	0.66495	20.161	19.849	20.514	0					39	24	2	0	0	0	0.34483	1	2503	2503		13.615	0.74226	1	150540			2328	1129	1255	1255	2868	2868					0.027888487179893673
ATAALSPQEK	10	Unmodified	_ATAALSPQEK_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2749328613281	2	508.274564	1014.53457	0.45919	0.0002334	0.21497	0.00010926	0.67416	0.00034266	508.27454058489906	20.366	0.44826	20.256	19.986	20.435	-0.11003					32	16	3	0	0	0	0.11865	1	2528	2528		43.982	22.392	1	215950			2329	1129	1255	1255	2869	2869					0.027888487179893673
ATAASSSSLEK	11	Unmodified	_ATAASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.26708984375	2	526.266936	1050.51932	0.35021	0.00018431	0.13424	7.0644E-05	0.48445	0.00025495	526.2669140476202	16.109	1.0656	16.109	15.654	16.72	0					80	37	3	0	0	0	2.6813E-25	2	1237	1191;1237		208.59	133.82	1	1111000			2330	1050;2147	1256	1256	2870;2871	2871					-0.003920628698551809
ATAASSSSLEK	11	Unmodified	_ATAASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2672119140625	2	526.266936	1050.51932	0.25143	0.00013232	0.21792	0.00011469	0.46936	0.00024701	526.2669639178775	16.241	1.0838	16.126	15.692	16.775	-0.11434					82	37	3	0	0	0	3.948E-18	2	1287	1240;1287		188.38	125.51	1	1248200			2331	1050;2147	1256	1256	2872;2873	2873					-0.003920628698551809
ATAASSSSLEK	11	Unmodified	_ATAASSSSLEK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000417985.1_1_X:46147855-46148119:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF;ENST00000423183.1_1_3:12112396-12112453:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.2671508789062	2	526.266936	1050.51932	0.38788	0.00020413	0.29296	0.00015417	0.68084	0.0003583	526.2669247352854	16.119	1.0965	16.057	15.607	16.703	-0.062534					107	37	4	0	0	0	1.9238E-18	3	1254	1205;1254;1299		196.06	121.29	1	1268300			2332	1050;2147	1256	1256	2874;2875;2876	2875					-0.003920628698551809
ATAAVTAAVK	10	Unmodified	_ATAAVTAAVK_					0	0	0		nc|ENSG00000165476|Q6NUK4-2|REEP3;ENSG00000165476|ENST00000373758|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7688293457031	2	451.768917	901.523281	-0.035786	-1.6167E-05	-0.13265	-5.9926E-05	-0.16843	-7.6093E-05	451.768738269808	22.72	0.86338	22.72	22.36	23.224	0					67	29	3	0	0	0	0.0012277	2	3229	3229;3279		117.76	48.656	1	237310			2333	5963	1257	1257	2877;2878	2877					0.0685807141450141
ATAAVTAAVK	10	Unmodified	_ATAAVTAAVK_					0	0	0		nc|ENSG00000165476|Q6NUK4-2|REEP3;ENSG00000165476|ENST00000373758|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7688293457031	2	451.768917	901.523281	-0.042209	-1.9069E-05	-0.079359	-3.5852E-05	-0.12157	-5.4921E-05	451.7687784258029	22.806	0.78773	22.719	22.403	23.191	-0.08761					61	27	3	0	0	0	0.00068414	1	3265	3265		125.04	55.933	1	305370			2334	5963	1257	1257	2879	2879					0.0685807141450141
ATAAVTAAVK	10	Unmodified	_ATAAVTAAVK_					0	0	0		nc|ENSG00000165476|Q6NUK4-2|REEP3;ENSG00000165476|ENST00000373758|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	nc|ENSG00000165476|Q6NUK4-2|REEP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.768798828125	2	451.768917	901.523281	0.066121	2.9871E-05	-0.088879	-4.0153E-05	-0.022759	-1.0282E-05	451.7687094762323	22.778	0.77818	22.734	22.471	23.249	-0.044867					59	27	3	0	0	0	0.0035533	2	3252	3252;3295		100.09	30.986	1	318140			2335	5963	1257	1257	2880;2881	2880					0.0685807141450141
ATADVVILY	9	Unmodified	_ATADVVILY_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.77130126953125	2	482.771126	963.527698	0.17283	8.3437E-05	0.081168	3.9186E-05	0.254	0.00012262	482.7711444254871	67.182	1.0215	67.182	66.856	67.878	0					115	35	4	0	0	0	0.0036555	3	16856	16856;16900;16945		97.075	33.512	1	5550400			2336	5061	1258	1258	2882;2883;2884	2882					0.044475358374370444
ATADVVILY	9	Unmodified	_ATADVVILY_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7712097167969	2	482.771126	963.527698	0.18892	9.1207E-05	0.043451	2.0977E-05	0.23238	0.00011218	482.77111907005076	67.097	1.1548	67.175	66.82	67.975	0.078041					122	40	4	0	0	0	0.0041925	2	16810	16810;16856		92.822	29.259	1	5347900			2337	5061	1258	1258	2885;2886	2885					0.044475358374370444
ATADVVILY	9	Unmodified	_ATADVVILY_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.771240234375	2	482.771126	963.527698	0.10376	5.0092E-05	0.16213	7.827E-05	0.26589	0.00012836	482.77116792061344	67.182	1.2039	67.166	66.839	68.043	-0.016296					117	41	4	0	0	0	0.0041925	3	16835	16835;16880;16930		92.822	29.259	1	5462200			2338	5061	1258	1258	2887;2888;2889	2887					0.044475358374370444
ATAELIMSR	9	Oxidation (M)	_ATAELIM(Oxidation (M))SR_		ATAELIM(1)SR		ATAELIM(180)SR	0	0	1		ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000595467.1_1_19:36037522-36037810:+|nuORF	ENSG00000105677|ENST00000222284|TMEM147	ENSG00000105677|ENST00000222284|TMEM147	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2635192871094	2	504.263142	1006.51173	0.41096	0.00020723	0.065135	3.2845E-05	0.47609	0.00024008	504.26322855325213	28.957	0.91064	28.957	28.64	29.551	0					96	32	4	0	0	0	2.4752E-08	2	5130	5082;5130		179.17	79.375	1	3298200			2339	2008	1259	1259	2890;2891	2891		247			0.008735063288895617
ATAELIMSR	9	Oxidation (M)	_ATAELIM(Oxidation (M))SR_		ATAELIM(1)SR		ATAELIM(150)SR	0	0	1		ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000595467.1_1_19:36037522-36037810:+|nuORF	ENSG00000105677|ENST00000222284|TMEM147	ENSG00000105677|ENST00000222284|TMEM147	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.26348876953125	2	504.263142	1006.51173	0.29422	0.00014836	0.11427	5.7621E-05	0.40848	0.00020598	504.26326463121694	28.922	1.2403	28.918	28.629	29.869	-0.0042572					97	42	4	0	0	0	2.5511E-05	2	5129	5080;5129		152.89	63.932	1	3694200			2340	2008	1259	1259	2892;2893	2893		247			0.008735063288895617
ATAELIMSR	9	Oxidation (M)	_ATAELIM(Oxidation (M))SR_		ATAELIM(1)SR		ATAELIM(170)SR	0	0	1		ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000595467.1_1_19:36037522-36037810:+|nuORF	ENSG00000105677|ENST00000222284|TMEM147	ENSG00000105677|ENST00000222284|TMEM147	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.26348876953125	2	504.263142	1006.51173	0.17208	8.6775E-05	0.27176	0.00013704	0.44384	0.00022381	504.26334320996574	28.919	1.2056	28.933	28.619	29.824	0.013475					111	42	4	0	0	0	3.6949E-07	3	5123	5081;5123;5166		165.72	65.921	1	3294300			2341	2008	1259	1259	2894;2895;2896	2895		247			0.008735063288895617
ATAFYRLTRK	10	Unmodified	_ATAFYRLTRK_					0	0	0		ENSG00000008394|ENST00000396210|MGST1;ENST00000537878.5_1_12:16500588-16507345:+|nuORF;nc|ENSG00000008394|P10620-2|MGST1;ENST00000539708.5_1_12:16507186-16513330:+|nuORF;ENST00000539036.5_1_12:16500588-16536519:+|nuORF;ENST00000538857.1_1_12:16507186-16536519:+|nuORF	ENSG00000008394|ENST00000396210|MGST1	ENSG00000008394|ENST00000396210|MGST1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.91046142578125	3	409.571657	1225.69314	-0.17129	-7.0154E-05	-0.60099	-0.00024615	-0.77227	-0.0003163	409.5714477468199	26.486	0.57331	26.486	26.215	26.789	0					27	19	2	0	0	0	0.3189	1	4405	4405		5.5233	2.68	1	179680			2342	396	1260	1260	2897	2897					0.08932187416894521
ATAGFTIGR	9	Unmodified	_ATAGFTIGR_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.24560546875	2	447.245609	892.476666	0.31848	0.00014244	-0.34915	-0.00015616	-0.03067	-1.3717E-05	447.2453721693202	35.646	0.60734	35.646	35.354	35.962	0					51	21	3	0	0	0	0.1645	1	7217	7217		40.239	22.093	1	1354000			2343	7466	1261	1261	2898	2898					0.026126315832470937
ATAGFTIGR	9	Unmodified	_ATAGFTIGR_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.24560546875	2	447.245609	892.476666	0.19941	8.9183E-05	-0.199	-8.9003E-05	0.00040249	1.8001E-07	447.2455093483732	35.516	0.59615	35.598	35.384	35.98	0.082355					48	21	3	0	0	0	2.5511E-05	1	7145	7145		152.89	84.805	1	1442100			2344	7466	1261	1261	2899	2899					0.026126315832470937
ATAGFTIGR	9	Unmodified	_ATAGFTIGR_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.2454833984375	2	447.245609	892.476666	-0.013399	-5.9928E-06	0.2272	0.00010162	0.2138	9.5623E-05	447.2456094741511	35.507	0.66582	35.594	35.317	35.982	0.086246					50	23	3	0	0	0	0.0073901	1	7161	7161		83.429	47.302	1	1266900			2345	7466	1261	1261	2900	2900					0.026126315832470937
ATAGIIGVNR	10	Unmodified	_ATAGIIGVNR_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant;ENST00000472129.3_1_17:57725612-57733400:+|nuORF	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.28564453125	2	486.285266	970.555979	-0.087801	-4.2696E-05	0.48094	0.00023387	0.39314	0.00019118	486.2855612404319	34.317	0.78144	34.317	33.969	34.751	0					94	27	4	0	0	0	2.3869E-20	3	6765	6721;6765;6805		209.87	123.54	1	11346000			2346	4369	1262	1262	2901;2902;2903	2902					0.06952278537380607
ATAGIIGVNR	10	Unmodified	_ATAGIIGVNR_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant;ENST00000472129.3_1_17:57725612-57733400:+|nuORF	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2855529785156	2	486.285266	970.555979	-0.090966	-4.4236E-05	0.36872	0.0001793	0.27775	0.00013507	486.2855291625972	34.213	0.82569	34.28	33.904	34.73	0.06636					105	29	5	0	0	0	6.6222E-14	2	6730	6730;6775		195.45	118.63	1	11203000			2347	4369	1262	1262	2904;2905	2904					0.06952278537380607
ATAGIIGVNR	10	Unmodified	_ATAGIIGVNR_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant;ENST00000472129.3_1_17:57725612-57733400:+|nuORF	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2854919433594	2	486.285266	970.555979	0.085726	4.1687E-05	0.23442	0.000114	0.32015	0.00015568	486.28545846323107	34.171	0.83878	34.238	33.879	34.718	0.0667					98	29	4	0	0	0	1.8151E-13	3	6674	6674;6718;6759		181.69	115.23	1	11342000			2348	4369	1262	1262	2906;2907;2908	2906					0.06952278537380607
ATAGIIGVNRK	11	Unmodified	_ATAGIIGVNRK_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant;ENST00000472129.3_1_17:57725612-57733400:+|nuORF	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3329467773438	2	550.332747	1098.65094	0.34558	0.00019019	-0.17833	-9.814E-05	0.16725	9.2046E-05	550.3327590364438	24.968	0.56567	24.968	24.762	25.328	0					57	19	4	0	0	0	0.010158	2	3899	3899;3946		69.338	24.192	1	424710			2349	4369	1263	1263	2909;2910	2909					0.10556212008555121
ATAGIIGVNRK	11	Unmodified	_ATAGIIGVNRK_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant;ENST00000472129.3_1_17:57725612-57733400:+|nuORF	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3328247070312	2	550.332747	1098.65094	0.30724	0.00016908	-0.15132	-8.3274E-05	0.15592	8.5808E-05	550.332759227026	25.046	0.77018	24.99	24.544	25.314	-0.055931					57	26	3	0	0	0	0.0012105	2	3924	3924;3972		93.938	34.57	1	439310			2350	4369	1263	1263	2911;2912	2911					0.10556212008555121
ATAGIIGVNRK	11	Unmodified	_ATAGIIGVNRK_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant;ENST00000472129.3_1_17:57725612-57733400:+|nuORF	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3329467773438	2	550.332747	1098.65094	0.034011	1.8717E-05	0.23918	0.00013163	0.27319	0.00015035	550.3330096633957	25.004	0.83215	24.972	24.515	25.347	-0.03141					69	28	4	0	0	0	0.0012105	2	3905	3905;3947		93.938	32.388	1	455990			2351	4369	1263	1263	2913;2914	2913					0.10556212008555121
ATAGNVLMH	9	Oxidation (M)	_ATAGNVLM(Oxidation (M))H_		ATAGNVLM(1)H		ATAGNVLM(89)H	0	0	1		ENSG00000157637|ENST00000374759|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	nc|ENSG00000157637|Q9HBR0-2|SLC38A10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.22882080078125	2	465.229102	928.443651	-0.13297	-6.1864E-05	-0.43812	-0.00020383	-0.57109	-0.00026569	465.2287586962336	23.863	1.1267	23.863	23.448	24.575	0					75	38	4	0	0	0	0.0046874	1	3567	3567		88.904	48.946	1	204370			2352	5318;12775	1264	1264	2915	2915		641			-0.023433185311205307
ATAGNVLMH	9	Oxidation (M)	_ATAGNVLM(Oxidation (M))H_		ATAGNVLM(1)H		ATAGNVLM(78)H	0	0	1		ENSG00000157637|ENST00000374759|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	nc|ENSG00000157637|Q9HBR0-2|SLC38A10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.22869873046875	2	465.229102	928.443651	-0.025777	-1.1992E-05	-0.2543	-0.00011831	-0.28008	-0.0001303	465.2287283235532	24.073	1.2016	24	23.501	24.702	-0.072559					74	40	3	0	0	0	0.01083	2	3605	3605;3649		78.149	45.844	1	183940			2353	5318;12775	1264	1264	2916;2917	2916		641			-0.023433185311205307
ATAGNVLMH	9	Oxidation (M)	_ATAGNVLM(Oxidation (M))H_		ATAGNVLM(1)H		ATAGNVLM(78)H	0	0	1		ENSG00000157637|ENST00000374759|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	nc|ENSG00000157637|Q9HBR0-2|SLC38A10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.22882080078125	2	465.229102	928.443651	0.21357	9.9359E-05	-0.69179	-0.00032184	-0.47822	-0.00022248	465.2285852196026	24.143	1.0031	24.104	23.534	24.537	-0.038927					75	34	3	0	0	0	0.01083	1	3592	3592		78.149	45.844	1	195510			2354	5318;12775	1264	1264	2918	2918		641			-0.023433185311205307
ATAGRQEVD	9	Unmodified	_ATAGRQEVD_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.76397705078125	2	473.733063	945.451573	0.18104	8.5765E-05	-1.3878	-0.00065744	-1.2067	-0.00057167	473.73178596648853	22.127	0.23667	22.027	21.968	22.205	-0.10034					10	8	2	0	0	0	0.2451	1	3082	3082		15.847	1.9411	1	40084			2355	8175	1265	1265	2919	2919					-0.023334680100106198
ATAIAETFKNE	11	Unmodified	_ATAIAETFKNE_					0	0	0		nc|ENSG00000172673|Q8N1K5-3|THEMIS;nc|ENSG00000172673|Q8N1K5-2|THEMIS;ENSG00000172673|ENST00000368248|THEMIS;nc|ENSG00000172673|Q8N1K5-4|THEMIS	nc|ENSG00000172673|Q8N1K5-3|THEMIS	nc|ENSG00000172673|Q8N1K5-3|THEMIS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.321533203125	2	597.803685	1193.59282	0.62248	0.00037212	2.8274	0.0016902	3.4499	0.0020623	598.3072127676902	53.283	0.34139	53.339	53.141	53.482	0.056255					19	12	2	0	0	0	0.39234	1	12591	12591		12.241	0.60036	1	350550			2356	6653	1266	1266	2920	2920					0.0037648557263310067
ATAIFLFTK	9	Unmodified	_ATAIFLFTK_					0	0	0		ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.297607421875	2	506.29731	1010.58007	0.18634	9.4342E-05	0.32236	0.00016321	0.5087	0.00025755	506.29743684376393	61.202	1.3898	61.202	60.851	62.24	0					178	51	5	0	0	0	6.5985E-11	4	15010	14963;15010;15059;15196		181.69	88.525	1	29724000			2357	3853	1267	1267	2921;2922;2923;2924	2922					0.07520118971046941
ATAIFLFTK	9	Unmodified	_ATAIFLFTK_					0	0	0		ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.29718017578125	2	506.29731	1010.58007	0.14882	7.5349E-05	0.28554	0.00014457	0.43437	0.00021992	506.2973994079795	61.097	1.3599	61.194	60.868	62.228	0.096985					166	49	5	0	0	0	6.5985E-11	5	14968	14923;14968;15017;15152;15201		181.69	88.525	1	33959000			2358	3853	1267	1267	2925;2926;2927;2928;2929	2926					0.07520118971046941
ATAIFLFTK	9	Unmodified	_ATAIFLFTK_					0	0	0		ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.29742431640625	2	506.29731	1010.58007	0.18825	9.5312E-05	0.33823	0.00017124	0.52648	0.00026655	506.29741297836074	61.161	1.969	61.151	60.862	62.831	-0.0094566					194	72	5	0	0	0	6.5985E-11	4	14997	14946;14997;15040;15165		181.69	88.525	1	37102000			2359	3853	1267	1267	2930;2931;2932;2933	2931					0.07520118971046941
ATAIGMPVEK	10	Oxidation (M)	_ATAIGM(Oxidation (M))PVEK_		ATAIGM(1)PVEK		ATAIGM(120)PVEK	0	0	1		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7735595703125	2	516.773342	1031.53213	0.32761	0.0001693	0.1163	6.0101E-05	0.44391	0.0002294	516.7733340611933	24.712	1.0462	24.712	24.367	25.413	0					98	35	4	0	0	0	0.0011942	3	3836	3836;3887;3896		118.21	63.436	1	2551200			2360	2268	1268	1268	2934;2935;2936	2934		280			0.017626769886874172
ATAIGMPVEK	10	Oxidation (M)	_ATAIGM(Oxidation (M))PVEK_		ATAIGM(1)PVEK		ATAIGM(130)PVEK	0	0	1		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7734985351562	2	516.773342	1031.53213	0.21934	0.00011335	0.17172	8.8741E-05	0.39107	0.00020209	516.7733676498916	24.781	1.4964	24.725	23.869	25.365	-0.055931					142	51	4	0	0	0	0.00041966	4	3869	3825;3869;3913;3914		128.58	64.342	1	2723100			2361	2268	1268	1268	2937;2938;2939;2940	2938		280			0.017626769886874172
ATAIGMPVEK	10	Oxidation (M)	_ATAIGM(Oxidation (M))PVEK_		ATAIGM(1)PVEK		ATAIGM(110)PVEK	0	0	1		ENSG00000109736|ENST00000355443|MFSD10;ENST00000509676.1_1_4:2934766-2935650:-|nuORF	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7734985351562	2	516.773342	1031.53213	-0.0098957	-5.1138E-06	0.36909	0.00019074	0.35919	0.00018562	516.7734843181573	24.743	1.4619	24.712	23.973	25.434	-0.03141					126	50	4	0	0	0	0.0021517	2	3854	3854;3901		108.26	53.488	1	2682600			2362	2268	1268	1268	2941;2942	2941		280			0.017626769886874172
ATALEYVYK	9	Unmodified	_ATALEYVYK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2822265625	2	529.281857	1056.54916	0.76184	0.00040323	-0.20032	-0.00010603	0.56152	0.0002972	529.2818443420492	44.743	1.2316	44.743	44.408	45.64	0					132	44	4	0	0	0	2.32E-07	3	9939	9892;9939;9982		171.09	117.25	1	14973000			2363	3877	1269	1269	2943;2944;2945	2944					0.023149208661379816
ATALEYVYK	9	Unmodified	_ATALEYVYK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2823486328125	2	529.281857	1056.54916	0.59625	0.00031558	-0.10637	-5.6299E-05	0.48988	0.00025928	529.281901971079	44.499	1.2712	44.568	44.274	45.545	0.068573					131	45	4	0	0	0	2.32E-07	3	9869	9822;9869;9915		171.09	117.25	1	15769000			2364	3877	1269	1269	2946;2947;2948	2947					0.023149208661379816
ATALEYVYK	9	Unmodified	_ATALEYVYK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2821655273438	2	529.281857	1056.54916	0.59477	0.0003148	-0.14471	-7.6591E-05	0.45007	0.00023821	529.2818672674816	44.444	1.4587	44.519	44.174	45.633	0.07505					156	53	4	0	0	0	2.32E-07	3	9842	9842;9884;9952		171.09	117.25	1	14727000			2365	3877	1269	1269	2949;2950;2951	2949					0.023149208661379816
ATALFSFL	8	Unmodified	_ATALFSFL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.25115966796875	2	435.242004	868.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.807	1	72.807	72.307	73.307	0								0	0	0	0.36169	1	18578	18578		9.3474	0	1				2366	1286	1270	1270	2952	2952					0.029958989827946425
ATALFSFLY	9	Unmodified	_ATALFSFLY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7737426757812	2	516.773668	1031.53278	0.30393	0.00015706	0.14213	7.345E-05	0.44606	0.00023051	516.7736465105876	92.228	0.61488	92.228	91.999	92.614	0					84	46	2	0	0	0	0.088391	3	24534	24495;24534;24573		39.957	13.074	1	236110			2367	1286	1271	1271	2953;2954;2955	2954					0.018278397000358382
ATALFSFLY	9	Unmodified	_ATALFSFLY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.2932739257812	2	516.773668	1031.53278	0.21934	0.00011335	-0.45905	-0.00023722	-0.2397	-0.00012387	516.7733676498916	24.781	1.4964	24.725	23.869	25.365	-0.055931					142	51	4	0	0	0	0.15219	1	3960	3960		30.637	1.1994	1	2723100			2368	1286	1271	1271	2956	2956					0.018278397000358382
ATALFSFLY	9	Unmodified	_ATALFSFLY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7738647460938	2	516.773668	1031.53278	0.27342	0.0001413	0.2251	0.00011632	0.49852	0.00025762	516.7736097298616	92.071	0.61768	92.162	91.908	92.526	0.090675					90	41	3	0	0	0	0.062246	3	24485	24444;24485;24523		48.346	10.195	1	478410			2369	1286	1271	1271	2957;2958;2959	2958					0.018278397000358382
ATALFSFLY	9	Unmodified	_ATALFSFLY_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7738037109375	2	516.773668	1031.53278	0.41263	0.00021324	-0.0098589	-5.0948E-06	0.40277	0.00020814	516.7735438866307	92.248	0.99793	92.249	91.957	92.955	0.00046539					139	69	3	0	0	0	0.0085732	3	24516	24475;24516;24556		81.613	26.84	1	633890			2370	1286	1271	1271	2960;2961;2962	2961					0.018278397000358382
ATALGFLAH	9	Unmodified	_ATALGFLAH_					0	0	0		ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7507019042969	2	450.750527	899.486502	0.21011	9.4707E-05	-0.035249	-1.5889E-05	0.17486	7.8818E-05	450.75047339763074	52.361	0.58216	52.361	52.074	52.656	0					38	20	2	0	0	0	2.3185E-05	2	12261	12261;12332		153.26	85.918	1	863470			2371	908	1272	1272	2963;2964	2963					0.0327381958860542
ATALGFLAH	9	Unmodified	_ATALGFLAH_					0	0	0		ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.750732421875	2	450.750527	899.486502	0.20404	9.1973E-05	0.11871	5.3507E-05	0.32275	0.00014548	450.7505711020694	52.276	0.62146	52.327	52.036	52.657	0.050575					48	22	3	0	0	0	2.3311E-08	2	12247	12247;12296		179.23	101.25	1	904960			2372	908	1272	1272	2965;2966	2965					0.0327381958860542
ATALGFLAH	9	Unmodified	_ATALGFLAH_					0	0	0		ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7505187988281	2	450.750527	899.486502	0.056956	2.5673E-05	0.2836	0.00012783	0.34055	0.0001535	450.7506281254154	52.406	0.4982	52.405	52.141	52.639	-0.00081253					39	17	3	0	0	0	4.6753E-07	2	12287	12287;12337		161.89	94.551	1	888240			2373	908	1272	1272	2967;2968	2967					0.0327381958860542
ATALGFLAHK	10	Unmodified	_ATALGFLAHK_					0	0	0		ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7977905273438	2	514.798009	1027.58147	0.46509	0.00023943	-0.46271	-0.0002382	0.0023775	1.2239E-06	514.7976621719034	40.639	0.73174	40.639	40.307	41.039	0					74	26	4	0	0	0	0.067799	1	8700	8700		53.404	42.58	1	1397100			2374	908	1273	1273	2969	2969					0.06877753059779934
ATALGFLAHK	10	Unmodified	_ATALGFLAHK_					0	0	0		ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7979736328125	2	514.798009	1027.58147	0.44313	0.00022812	-0.54784	-0.00028203	-0.10471	-5.3906E-05	514.7976438045233	40.377	0.70456	40.47	40.2	40.905	0.09267					65	25	4	0	0	0	0.025736	1	8649	8649		65.474	40.074	1	1607700			2375	908	1273	1273	2970	2970					0.06877753059779934
ATALGFLAHK	10	Unmodified	_ATALGFLAHK_					0	0	0		ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7978515625	2	514.798009	1027.58147	0.3395	0.00017477	-0.50983	-0.00026246	-0.17033	-8.7685E-05	514.797665994604	40.358	0.76279	40.458	40.173	40.936	0.099407					63	27	3	0	0	0	0.018978	1	8591	8591		70.332	54.485	1	1807700			2376	908	1273	1273	2971	2971					0.06877753059779934
ATALGLAAALG	11	Unmodified	_ATALGLAAALG_					0	0	0		ENSG00000235098|ENST00000537107|ANKRD65	ENSG00000235098|ENST00000537107|ANKRD65	ENSG00000235098|ENST00000537107|ANKRD65	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7664794921875	2	464.776742	927.538931	-0.12255	-5.6957E-05	-0.041851	-1.9451E-05	-0.1644	-7.6408E-05	464.7767080084817	24.927	0.91359	24.871	24.6	25.514	-0.055931					62	31	3	0	0	0	0.34542	1	3864	3864		18.146	0	1	657670			2377	8490	1274	1274	2972	2972					0.07226357931551775
ATALPTGTSK	10	Unmodified	_ATALPTGTSK_					0	0	0		nc|ENSG00000196470|Q8IUQ4-3|SIAH1;ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1	nc|ENSG00000196470|Q8IUQ4-3|SIAH1	nc|ENSG00000196470|Q8IUQ4-3|SIAH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7639465332031	2	473.763832	945.513111	0.058244	2.7594E-05	0.11176	5.2947E-05	0.17	8.0541E-05	473.7638810669846	21.949	0.99347	21.949	21.601	22.594	0					91	35	4	0	0	0	0.0039563	2	2987	2987;3033		97.741	21.98	1	1113700			2378	7868	1275	1275	2973;2974	2973					0.038174636892904346
ATALPTGTSK	10	Unmodified	_ATALPTGTSK_					0	0	0		nc|ENSG00000196470|Q8IUQ4-3|SIAH1;ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1	nc|ENSG00000196470|Q8IUQ4-3|SIAH1	nc|ENSG00000196470|Q8IUQ4-3|SIAH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.763916015625	2	473.763832	945.513111	0.2016	9.551E-05	0.12712	6.0223E-05	0.32872	0.00015573	473.76384292981504	22.068	1.092	21.968	21.657	22.749	-0.10034					85	39	3	0	0	0	0.0055648	2	3033	2986;3033		88.364	15.396	1	1230000			2379	7868	1275	1275	2975;2976	2976					0.038174636892904346
ATALPTGTSK	10	Unmodified	_ATALPTGTSK_					0	0	0		nc|ENSG00000196470|Q8IUQ4-3|SIAH1;ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1	nc|ENSG00000196470|Q8IUQ4-3|SIAH1	nc|ENSG00000196470|Q8IUQ4-3|SIAH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7639465332031	2	473.763832	945.513111	0.10252	4.8568E-05	0.12146	5.7544E-05	0.22398	0.00010611	473.7638566307382	22.037	1.1002	21.987	21.574	22.674	-0.049377					95	38	4	0	0	0	0.022722	3	3024	2976;3024;3068		68.76	21.165	1	1136900			2380	7868	1275	1275	2977;2978;2979	2978					0.038174636892904346
ATALVTGVCLG	11	Unmodified	_ATALVTGVCLG_					0	0	0		ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7618103027344	2	502.775885	1003.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.069	1	18.069	17.569	18.569	0								0	0	0	0.32418	1	1820	1820		13.906	3.7227	1				2381	7005	1276	1276	2980	2980					0.035589808512895615
ATAMGAFVR	9	Oxidation (M)	_ATAM(Oxidation (M))GAFVR_		ATAM(1)GAFVR		ATAM(73)GAFVR	0	0	1		ENSG00000205138|ENST00000378887|SDHAF1	ENSG00000205138|ENST00000378887|SDHAF1	ENSG00000205138|ENST00000378887|SDHAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.23931884765625	2	470.23947	938.464386	-0.035385	-1.664E-05	-0.13353	-6.279E-05	-0.16891	-7.943E-05	470.2393388615194	25.413	0.6966	25.413	24.986	25.683	0					43	23	2	0	0	0	0.051692	1	4062	4062		72.968	47.569	1	253770			2382	8274	1277	1277	2981	2981		894			-0.007307281514499664
ATAMGAFVR	9	Oxidation (M)	_ATAM(Oxidation (M))GAFVR_		ATAM(1)GAFVR		ATAM(100)GAFVR	0	0	1		ENSG00000205138|ENST00000378887|SDHAF1	ENSG00000205138|ENST00000378887|SDHAF1	ENSG00000205138|ENST00000378887|SDHAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2392883300781	2	470.23947	938.464386	-0.11557	-5.4345E-05	-0.10966	-5.1567E-05	-0.22523	-0.00010591	470.2393308251948	25.359	0.73154	25.303	24.972	25.704	-0.055929					46	25	2	0	0	0	0.0057766	1	4075	4075		99.799	61.825	1	282210			2383	8274	1277	1277	2982	2982		894			-0.007307281514499664
ATAMGAFVR	9	Oxidation (M)	_ATAM(Oxidation (M))GAFVR_		ATAM(1)GAFVR		ATAM(79)GAFVR	0	0	1		ENSG00000205138|ENST00000378887|SDHAF1	ENSG00000205138|ENST00000378887|SDHAF1	ENSG00000205138|ENST00000378887|SDHAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2393493652344	2	470.23947	938.464386	-0.14868	-6.9917E-05	-0.18848	-8.8631E-05	-0.33716	-0.00015855	470.23929065244437	25.542	0.81151	25.511	24.953	25.764	-0.031408					51	28	2	0	0	0	0.03332	1	4073	4073		78.728	40.754	1	265860			2384	8274	1277	1277	2983	2983		894			-0.007307281514499664
ATAMLQSLLK	10	Oxidation (M)	_ATAM(Oxidation (M))LQSLLK_		ATAM(1)LQSLLK		ATAM(99)LQSLLK	0	0	1		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.3104858398438	2	546.310092	1090.60563	0.73631	0.00040225	-0.063978	-3.4952E-05	0.67233	0.0003673	546.3099241522463	47.29	0.52483	47.29	47.053	47.578	0					25	18	2	0	0	0	0.0037867	2	10749	10749;10755		98.73	50.998	1	556620			2385	7883	1278	1278	2984;2985	2984		858			0.0639522543115163
ATAMLQSLLK	10	Oxidation (M)	_ATAM(Oxidation (M))LQSLLK_		ATAM(1)LQSLLK		ATAM(65)LQSLLK	0	0	1		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.805908203125	2	546.310092	1090.60563	1.2085	0.00066022	0.0058198	3.1794E-06	1.2143	0.0006634	546.3097798511486	47.283	0.5086	47.338	47.064	47.572	0.054371					25	18	2	0	0	0	0.12459	1	10755	10755		64.692	33.423	1	716010			2386	7883	1278	1278	2986	2986		858			0.0639522543115163
ATANQIILK	9	Unmodified	_ATANQIILK_					0	0	0		nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2973937988281	2	486.297842	970.581131	0.47386	0.00023044	-0.30802	-0.00014979	0.16584	8.0648E-05	486.2976816030742	33.66	0.82809	33.66	33.365	34.193	0					99	29	4	0	0	0	1.6153E-16	3	6523	6523;6571;6623		208.15	91.057	1	6742500			2387	12724	1279	1279	2987;2988;2989	2987					0.09466333339946686
ATANQIILK	9	Unmodified	_ATANQIILK_					0	0	0		nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.298095703125	2	486.297842	970.581131	0.65995	0.00032093	-0.16379	-7.9649E-05	0.49617	0.00024129	486.2977555354769	33.544	0.88044	33.61	33.323	34.203	0.06636					104	31	5	0	0	0	2.4232E-17	3	6543	6495;6543;6586		223.81	81.58	1	7648100			2388	12724	1279	1279	2990;2991;2992	2991					0.09466333339946686
ATANQIILK	9	Unmodified	_ATANQIILK_					0	0	0		nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.29815673828125	2	486.297842	970.581131	0.13007	6.3254E-05	0.30138	0.00014656	0.43145	0.00020981	486.29797788198573	33.552	0.77117	33.619	33.328	34.099	0.066704					90	27	4	0	0	0	4.8913000000000006E-24	3	6532	6485;6532;6576		240.41	96.06	1	7652900			2389	12724	1279	1279	2993;2994;2995	2994					0.09466333339946686
ATAPPGVLK	9	Unmodified	_ATAPPGVLK_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.5469970703125	2	427.260728	852.506903	-0.20873	-8.9181E-05	0.064039	2.7361E-05	-0.14469	-6.182E-05	427.26066598417407	28.557	0.59043	28.557	28.333	28.924	0					44	20	3	0	0	0	0.2322	1	4962	4962		14.838	4.0143	1	154440			2390	1991	1280	1280	2996	2996					0.07474990248431368
ATAPPGVLK	9	Unmodified	_ATAPPGVLK_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.547119140625	2	427.260728	852.506903	-0.22128	-9.4546E-05	-0.081363	-3.4763E-05	-0.30265	-0.00012931	427.2605796991919	28.538	0.62008	28.534	28.247	28.867	-0.0042572					34	21	2	0	0	0	0.2322	1	4964	4964		20.454	6.9457	1	189110			2391	1991	1280	1280	2997	2997					0.07474990248431368
ATAPSGVRR	9	Unmodified	_ATAPSGVRR_					0	0	0		ENSG00000071246|ENST00000167106|VASH1;nc|ENSG00000071246|Q7L8A9-2|VASH1	ENSG00000071246|ENST00000167106|VASH1	ENSG00000071246|ENST00000167106|VASH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.76165771484375	2	457.761958	913.509363	-0.24191	-0.00011074	-0.16199	-7.4154E-05	-0.4039	-0.00018489	457.7617537597449	13.352	0.33684	13.352	13.2	13.537	0					31	11	4	0	0	0	0.020233	1	402	402		63.961	27.454	1	257980			2392	955	1281	1281	2998	2998					0.04914838706088176
ATAPSGVRR	9	Unmodified	_ATAPSGVRR_					0	0	0		ENSG00000071246|ENST00000167106|VASH1;nc|ENSG00000071246|Q7L8A9-2|VASH1	ENSG00000071246|ENST00000167106|VASH1	ENSG00000071246|ENST00000167106|VASH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7616882324219	2	457.761958	913.509363	-0.22587	-0.0001034	-0.10595	-4.8499E-05	-0.33182	-0.0001519	457.7617949139174	13.423	0.41952	13.324	13.189	13.608	-0.099291					29	14	3	0	0	0	0.0042138	1	427	427		92.653	50.814	1	278380			2393	955	1281	1281	2999	2999					0.04914838706088176
ATAPSGVRR	9	Unmodified	_ATAPSGVRR_					0	0	0		ENSG00000071246|ENST00000167106|VASH1;nc|ENSG00000071246|Q7L8A9-2|VASH1	ENSG00000071246|ENST00000167106|VASH1	ENSG00000071246|ENST00000167106|VASH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7616882324219	2	457.761958	913.509363	-0.22755	-0.00010416	-0.033946	-1.5539E-05	-0.2615	-0.0001197	457.76179524898816	13.445	0.47112	13.377	13.189	13.66	-0.067496					36	16	4	0	0	0	0.03069	1	421	421		60.074	29.437	1	290810			2394	955	1281	1281	3000	3000					0.04914838706088176
ATAQAVAPPR	10	Unmodified	_ATAQAVAPPR_					0	0	0		ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7379455566406	2	491.277441	980.540328	0.17261	8.4799E-05	-0.076236	-3.7453E-05	0.096374	4.7346E-05	491.2773106433202	22.508	0.68434	22.508	22.252	22.936	0					50	23	3	0	0	0	0.27529	1	3192	3192		29.841	4.8496	1	228070			2395	12326	1282	1282	3001	3001					0.049279920203161964
ATAQAVAPPR	10	Unmodified	_ATAQAVAPPR_					0	0	0		ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.8035583496094	2	491.277441	980.540328	0.17419	8.5576E-05	-0.095759	-4.7044E-05	0.078432	3.8532E-05	491.2773881700768	22.603	0.63717	22.515	22.272	22.909	-0.087608					54	22	3	0	0	0	0.29112	1	3241	3241		24.991	0	1	278830			2396	12326	1282	1282	3002	3002					0.049279920203161964
ATAQAVAPPR	10	Unmodified	_ATAQAVAPPR_					0	0	0		ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.803466796875	2	491.277441	980.540328	0.15239	7.4865E-05	-0.051429	-2.5266E-05	0.10096	4.96E-05	491.27736905135527	22.631	0.81813	22.586	22.266	23.084	-0.044867					56	28	3	0	0	0	0.24359	1	3237	3237		38.176	11.907	1	255170			2397	12326	1282	1282	3003	3003					0.049279920203161964
ATAQVNPLYK	10	Unmodified	_ATAQVNPLYK_					0	0	0		ENSG00000171150|ENST00000394861|SOCS5;ENST00000425115.1_1_3:44751367-44751973:-|nuORF	ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3408203125	2	552.806031	1103.59751	0.91963	0.00050838	3.2723	0.0018089	4.1919	0.0023173	552.8077037408816	33.7	0.63338	33.767	33.432	34.066	0.06636					36	22	2	0	0	0	0.23628	1	6590	6590		42.312	19.576	1	221570			2398	6517	1283	1283	3004	3004					0.04985414506040797
ATAQVNPLYK	10	Unmodified	_ATAQVNPLYK_					0	0	0		ENSG00000171150|ENST00000394861|SOCS5;ENST00000425115.1_1_3:44751367-44751973:-|nuORF	ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3406372070312	2	552.806031	1103.59751	0.18083	9.9963E-05	4.3072	0.002381	4.488	0.002481	552.8084134201162	33.718	0.68428	33.784	33.387	34.071	0.066704					40	24	2	0	0	0	0.27086	1	6588	6588		32.037	11.623	1	230510			2399	6517	1283	1283	3005	3005					0.04985414506040797
ATAQVNPLYK	10	Unmodified	_ATAQVNPLYK_					0	0	0		ENSG00000171150|ENST00000394861|SOCS5;ENST00000425115.1_1_3:44751367-44751973:-|nuORF	ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	552.806031	1103.59751	0.71226	0.00039374	2.6741	0.0014783	3.3864	0.001872	552.8078175583249	33.924	0.74173	33.924	33.393	34.135	0	0.099218	-0.00081207	NaN	55.235	38	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185260			2400	6517	1283	1283							0.04985414506040797
ATARNLLGK	9	Unmodified	_ATARNLLGK_					0	0	0		nc|ENSG00000172765|O94876-2|TMCC1;ENSG00000172765|ENST00000393238|TMCC1	nc|ENSG00000172765|O94876-2|TMCC1	nc|ENSG00000172765|O94876-2|TMCC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2876892089844	2	472.287808	942.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.891	1	20.838	20.338	21.338	-0.05291								0	0	0	0.21283	1	2674	2674		18.373	1.4308	1				2401	6661	1284	1284	3006	3006					0.08748582400005489
ATARPRPVK	9	Unmodified	_ATARPRPVK_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3089904785156	2	498.309075	994.603597	0.029132	1.4517E-05	-0.10793	-5.3785E-05	-0.078803	-3.9268E-05	498.30896929191607	12.484	0.30523	12.484	12.364	12.669	0					25	9	4	0	0	0	0.12642	1	141	141		34.402	5.3201	1	510400			2402	6491	1285	1285	3007	3007					0.1060797752822964
ATARPRPVK	9	Unmodified	_ATARPRPVK_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.30902099609375	2	498.309075	994.603597	0.090344	4.5019E-05	-0.0035144	-1.7513E-06	0.08683	4.3268E-05	498.30904076489776	12.489	0.40765	12.392	12.268	12.676	-0.096606					28	13	3	0	0	0	0.088443	1	139	139		39.95	9.7249	1	552460			2403	6491	1285	1285	3008	3008					0.1060797752822964
ATARPRPVK	9	Unmodified	_ATARPRPVK_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.3092956542969	2	498.309075	994.603597	-0.091602	-4.5646E-05	0.23847	0.00011883	0.14686	7.3183E-05	498.30912892979933	12.515	0.35693	12.447	12.313	12.67	-0.06806					26	11	3	0	0	0	0.14786	1	143	143		31.268	8.1199	1	540290			2404	6491	1285	1285	3009	3009					0.1060797752822964
ATASLGVIHK	10	Unmodified	_ATASLGVIHK_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7812194824219	2	498.795466	995.57638	0.2959	0.00014759	-0.99209	-0.00049485	-0.69619	-0.00034726	498.7949970168152	26.74	0.64866	26.74	26.558	27.207	0					51	22	3	0	0	0	0.00039324	1	4438	4438		128.93	88.983	1	682830			2405	6741	1286	1286	3010	3010					0.07841449197178463
ATASLGVIHK	10	Unmodified	_ATASLGVIHK_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.78125	2	498.795466	995.57638	0.32779	0.0001635	-1.0043	-0.00050095	-0.67653	-0.00033745	498.7948648640491	26.719	0.59388	26.68	26.519	27.113	-0.038671					47	20	3	0	0	0	0.0040945	2	4476	4432;4476		96.936	67.854	1	780310			2406	6741	1286	1286	3011;3012	3012					0.07841449197178463
ATASLGVIHK	10	Unmodified	_ATASLGVIHK_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7813720703125	2	498.795466	995.57638	0.50557	0.00025218	-1.4529	-0.00072471	-0.94734	-0.00047253	498.7947342567489	26.728	0.64591	26.713	26.564	27.209	-0.015066					57	22	3	0	0	0	0.0092666	3	4434	4434;4477;4538		83.429	54.347	1	720040			2407	6741	1286	1286	3013;3014;3015	3013					0.07841449197178463
ATASVNLKV	9	Unmodified	_ATASVNLKV_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1;nc|ENSG00000164985|O75475-3|PSIP1;nc|ENSG00000164985|O75475-2|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.75274658203125	2	451.768917	901.523281	0.29322	0.00013247	-1.6174	-0.00073067	-1.3241	-0.0005982	451.767938502114	36.557	0.49005	36.557	36.385	36.875	0					20	16	2	0	0	0	0.058995	1	7432	7432		49.554	11.379	1	104640			2408	5913	1287	1287	3016	3016					0.06858071414524147
ATASVNLKV	9	Unmodified	_ATASVNLKV_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1;nc|ENSG00000164985|O75475-3|PSIP1;nc|ENSG00000164985|O75475-2|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7528076171875	2	451.768917	901.523281	0.31931	0.00014426	-1.3184	-0.00059563	-0.99913	-0.00045137	451.7682412686269	36.382	0.47697	36.464	36.308	36.785	0.082359					21	16	2	0	0	0	0.058995	1	7395	7395		49.554	11.379	1	147470			2409	5913	1287	1287	3017	3017					0.06858071414524147
ATASVNLKV	9	Unmodified	_ATASVNLKV_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1;nc|ENSG00000164985|O75475-3|PSIP1;nc|ENSG00000164985|O75475-2|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7529296875	2	451.768917	901.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.394	1	36.48	35.98	36.98	0.08625								0	0	0	0.111	1	7382	7382		43.772	10.987	1				2410	5913	1287	1287	3018	3018					0.06858071414524147
ATATANQIILK	11	Unmodified	_ATATANQIILK_					0	0	0		nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3403930664062	2	572.340238	1142.66592	0.65221	0.00037329	-0.28229	-0.00016156	0.36992	0.00021172	572.3399334298101	37.393	0.71883	37.393	37.152	37.871	0					71	25	4	0	0	0	1.056E-08	2	7666	7666;7713		142.92	78.958	1	2066800			2411	12724	1288	1288	3019;3020	3019					0.10029659085898857
ATATANQIILK	11	Unmodified	_ATATANQIILK_					0	0	0		nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.3403930664062	2	572.340238	1142.66592	0.41597	0.00023808	-0.1398	-8.001E-05	0.27618	0.00015807	572.3400245452566	37.309	0.76064	37.397	37.142	37.903	0.08741					74	27	4	0	0	0	5.4554E-06	2	7645	7645;7694		128.58	66.006	1	1958000			2412	12724	1288	1288	3021;3022	3021					0.10029659085898857
ATATANQIILK	11	Unmodified	_ATATANQIILK_					0	0	0		nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3403930664062	2	572.340238	1142.66592	0.34219	0.00019585	0.088229	5.0497E-05	0.43042	0.00024635	572.3401415923786	37.282	0.75213	37.375	37.114	37.866	0.093018					82	27	4	0	0	0	0.00039266	1	7668	7668		105.35	57.751	1	1993400			2413	12724	1288	1288	3023	3023					0.10029659085898857
ATATELTTK	9	Unmodified	_ATATELTTK_					0	0	0		nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	nc|ENSG00000133606|Q9UHC7-4|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7895202636719	2	468.25584	934.497126	-0.14081	-6.5937E-05	0.0036744	1.7206E-06	-0.13714	-6.4217E-05	468.25577708721767	19.392	0.83931	19.392	19.066	19.905	0					66	29	3	0	0	0	0.23749	1	2259	2259		15.248	3.0078	1	200390			2414	3716	1289	1289	3024	3024					0.027257574523787298
ATATELTTK	9	Unmodified	_ATATELTTK_					0	0	0		nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	nc|ENSG00000133606|Q9UHC7-4|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.5737609863281	2	468.25584	934.497126	0.042339	1.9826E-05	-0.006963	-3.2605E-06	0.035376	1.6565E-05	468.25585046704816	19.548	0.95249	19.432	19.058	20.01	-0.11592					70	32	3	0	0	0	0.23235	1	2283	2283		21.537	2.28	1	197850			2415	3716	1289	1289	3025	3025					0.027257574523787298
ATATLIIEH	9	Unmodified	_ATATLIIEH_					0	0	0		ENST00000553987.1_1_14:53248483-53250189:-|nuORF;ENSG00000100522|ENST00000216410|GNPNAT1	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.77423095703125	2	484.7742	967.533846	0.38659	0.00018741	-0.077545	-3.7592E-05	0.30905	0.00014982	484.7739980188632	40.331	0.60994	40.331	40.024	40.634	0					47	21	3	0	0	0	2.0056E-06	1	8578	8578		164.52	106.79	1	1151800			2416	1605	1290	1290	3026	3026					0.04878054068956317
ATATLIIEH	9	Unmodified	_ATATLIIEH_					0	0	0		ENST00000553987.1_1_14:53248483-53250189:-|nuORF;ENSG00000100522|ENST00000216410|GNPNAT1	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7740783691406	2	484.7742	967.533846	0.46253	0.00022422	-0.29012	-0.00014064	0.17241	8.3578E-05	484.77386828892946	40.264	0.56032	40.356	40.051	40.611	0.092674					45	19	3	0	0	0	0.0026202	1	8599	8599		111.29	61.354	1	1206200			2417	1605	1290	1290	3027	3027					0.04878054068956317
ATATLIIEH	9	Unmodified	_ATATLIIEH_					0	0	0		ENST00000553987.1_1_14:53248483-53250189:-|nuORF;ENSG00000100522|ENST00000216410|GNPNAT1	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	ENST00000553987.1_1_14:53248483-53250189:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.774169921875	2	484.7742	967.533846	0.42242	0.00020478	-0.12779	-6.195E-05	0.29463	0.00014283	484.7740035967409	40.212	0.52179	40.311	40.01	40.532	0.099407					43	18	3	0	0	0	0.0015545	2	8526	8526;8572		115.69	57.97	1	1198000			2418	1605	1290	1290	3028;3029	3028					0.04878054068956317
ATATVAALQEK	11	Unmodified	_ATATVAALQEK_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.809326171875	2	551.808771	1101.60299	0.4214	0.00023253	0.48779	0.00026917	0.90918	0.0005017	551.8089400881274	30.504	0.55845	30.504	30.194	30.753	0					41	19	3	0	0	0	0.00097064	1	5567	5567		97.284	38.271	1	304500			2419	3048	1291	1291	3030	3030					0.05625093297840067
ATATVAALQEK	11	Unmodified	_ATATVAALQEK_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8093872070312	2	551.808771	1101.60299	0.47079	0.00025979	0.32504	0.00017936	0.79583	0.00043915	551.8088027330601	30.476	0.56693	30.504	30.274	30.841	0.027946					35	19	3	0	0	0	0.00051129	1	5575	5575		103.69	40.911	1	313950			2420	3048	1291	1291	3031	3031					0.05625093297840067
ATATVAALQEK	11	Unmodified	_ATATVAALQEK_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8099365234375	2	551.808771	1101.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.677	1	30.705	30.205	31.205	0.027946								0	0	0	0.29815	1	5643	5643		19.626	3.0601	1				2421	3048	1291	1291	3032	3032					0.05625093297840067
ATATVAALQEK	11	Unmodified	_ATATVAALQEK_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8092041015625	2	551.808771	1101.60299	0.1105	6.0976E-05	0.79223	0.00043716	0.90273	0.00049814	551.8091413073006	30.477	0.61618	30.504	30.25	30.866	0.027157					42	21	3	0	0	0	1.1839E-05	1	5579	5579		122.57	43.96	1	338290			2422	3048	1291	1291	3033	3033					0.05625093297840067
ATAWFFEGMTY	11	Unmodified	_ATAWFFEGMTY_					0	0	0			REV__ENSG00000109927|ENST00000392793|TECTA	REV__ENSG00000109927|ENST00000392793|TECTA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.263671875	3	441.861996	1322.56416	0.29219	0.00012911	1.9916	0.00087999	2.2837	0.0010091	441.8630130508884	19.748	0.69649	19.692	19.337	20.034	-0.055693					67	24	4	0	0	0	0.3322	1	2304	2304		1.2148	0	1	69168	+		2423	14656	1292	1292	3034	3034					-0.08421955328162767
ATAYLPMLEK	10	Oxidation (M)	_ATAYLPM(Oxidation (M))LEK_		ATAYLPM(1)LEK		ATAYLPM(57)LEK	0	0	1		ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.8028564453125	2	576.8021	1151.58965	0.49255	0.00028411	0.68715	0.00039635	1.1797	0.00068046	576.8025184588768	46.889	0.64781	46.889	46.566	47.214	0					51	22	3	0	0	0	0.058704	1	10592	10592		57.108	35.571	1	1437800			2424	3754	1293	1293	3035	3035		469			0.0199151919423457
ATAYLPMLEK	10	Oxidation (M)	_ATAYLPM(Oxidation (M))LEK_		ATAYLPM(1)LEK		ATAYLPM(57)LEK	0	0	1		ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3038330078125	2	576.8021	1151.58965	0.45085	0.00026005	0.814	0.00046952	1.2648	0.00072957	576.8025945918744	46.822	0.6413	46.875	46.527	47.168	0.052574					61	23	3	0	0	0	0.058704	1	10599	10599		57.108	25.839	1	1121400			2425	3754	1293	1293	3036	3036		469			0.0199151919423457
ATAYLPMLEK	10	Oxidation (M)	_ATAYLPM(Oxidation (M))LEK_		ATAYLPM(1)LEK		ATAYLPM(59)LEK	0	0	1		ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8025512695312	2	576.8021	1151.58965	0.51479	0.00029693	0.52505	0.00030285	1.0398	0.00059978	576.8023700603293	46.84	0.81763	46.894	46.492	47.309	0.054375					59	28	3	0	0	0	0.049822	1	10583	10583		59.052	29.971	1	1074600			2426	3754	1293	1293	3037	3037		469			0.0199151919423457
ATDAAANLTK	10	Unmodified	_ATDAAANLTK_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.78509521484375	2	488.258914	974.503274	0.35133	0.00017154	-0.9931	-0.00048489	-0.64177	-0.00031335	488.2583980680058	20.46	0.51301	20.46	20.285	20.798	0					32	17	2	0	0	0	0.21413	1	2553	2553		42.835	7.9031	1	134790			2427	2470	1294	1294	3038	3038					0.01500275683883956
ATDAAANLTK	10	Unmodified	_ATDAAANLTK_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7850646972656	2	488.258914	974.503274	0.57037	0.00027849	-1.3003	-0.00063488	-0.72992	-0.00035639	488.25844295823464	20.657	0.57242	20.547	20.407	20.979	-0.11003					38	19	3	0	0	0	0.17727	1	2618	2618		59.052	24.12	1	127430			2428	2470	1294	1294	3039	3039					0.01500275683883956
ATDAVGIVLK	10	Unmodified	_ATDAVGIVLK_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000462978.1_1_1:155697409-155701908:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7979736328125	2	493.797675	985.580796	0.50019	0.00024699	-0.2653	-0.000131	0.23489	0.00011599	493.79751363558216	45.107	0.91808	45.107	44.802	45.72	0					62	33	3	0	0	0	0.017397	1	10045	10045		93.166	49.393	1	1050600			2429	3656	1295	1295	3040	3040					0.08742913620096715
ATDAVGIVLK	10	Unmodified	_ATDAVGIVLK_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000462978.1_1_1:155697409-155701908:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7976989746094	2	493.797675	985.580796	0.50467	0.00024921	-0.48658	-0.00024027	0.018089	8.9325E-06	493.7974151724256	45.035	0.86834	45.104	44.817	45.685	0.068569					61	30	3	0	0	0	0.070201	1	10062	10062		80.676	38.72	1	990480			2430	3656	1295	1295	3041	3041					0.08742913620096715
ATDAVGIVLK	10	Unmodified	_ATDAVGIVLK_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000462978.1_1_1:155697409-155701908:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.79754638671875	2	493.797675	985.580796	0.49425	0.00024406	-0.37958	-0.00018744	0.11466	5.6619E-05	493.79743228493896	45.035	0.84922	45.11	44.808	45.657	0.07505					63	31	3	0	0	0	0.070201	1	10045	10045		71.708	29.752	1	1129200			2431	3656	1295	1295	3042	3042					0.08742913620096715
ATDFGQTNQK	10	Unmodified	_ATDFGQTNQK_					0	0	0		ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7670288085938	2	555.264727	1108.5149	0.28004	0.0001555	0.18718	0.00010394	0.46722	0.00025943	555.2645823384653	17.332	0.4514	17.271	17.079	17.53	-0.060431					20	15	2	0	0	0	0.39612	1	1606	1606		4.1895	1.691	1	48201			2432	1160	1296	1296	3043	3043					-0.03501527292769424
ATDFGQTNQK	10	Unmodified	_ATDFGQTNQK_					0	0	0		ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	555.264727	1108.5149	0.27687	0.00015374	0.11694	6.4933E-05	0.39381	0.00021867	555.2644135695572	17.502	0.08474	17.502	17.452	17.537	0	0.11553	-7.5662E-05	NaN	4.1895	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10014			2433	1160	1296	1296							-0.03501527292769424
ATDIPSSQK	9	Unmodified	_ATDIPSSQK_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;APC|p.R1687Tfs*13|1|0.33|ENSG00000134982|chr5:112840647-112840648|-/A|frameshift_variant;APC|p.I1304Kfs*2|1|0.18|ENSG00000134982|chr5:112839500-112839506|GCAAATA/-|frameshift_variant	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7459716796875	2	473.745639	945.476725	0.018448	8.7398E-06	0.14134	6.6959E-05	0.15979	7.5698E-05	473.74561035013784	16.558	0.91294	16.558	16.184	17.097	0					59	31	3	0	0	0	0.16685	1	1325	1325		28.495	3.0952	1	425790			2434	3835	1297	1297	3044	3044					0.0018058679256682808
ATDIPSSQK	9	Unmodified	_ATDIPSSQK_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;APC|p.R1687Tfs*13|1|0.33|ENSG00000134982|chr5:112840647-112840648|-/A|frameshift_variant;APC|p.I1304Kfs*2|1|0.18|ENSG00000134982|chr5:112839500-112839506|GCAAATA/-|frameshift_variant	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7458190917969	2	473.745639	945.476725	0.02207	1.0456E-05	0.32026	0.00015172	0.34233	0.00016218	473.7456977509054	16.639	0.91779	16.525	16.166	17.084	-0.11434					71	32	4	0	0	0	0.15763	1	1414	1414		29.841	0.759	1	398320			2435	3835	1297	1297	3045	3045					0.0018058679256682808
ATDIPSSQK	9	Unmodified	_ATDIPSSQK_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;APC|p.R1687Tfs*13|1|0.33|ENSG00000134982|chr5:112840647-112840648|-/A|frameshift_variant;APC|p.I1304Kfs*2|1|0.18|ENSG00000134982|chr5:112839500-112839506|GCAAATA/-|frameshift_variant	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.74578857421875	2	473.745639	945.476725	0.21923	0.00010386	0.064884	3.0738E-05	0.28411	0.0001346	473.7456449650532	16.61	1.0613	16.548	16.205	17.267	-0.062532					75	37	4	0	0	0	0.037019	1	1349	1349		57.722	2.9484	1	370920			2436	3835	1297	1297	3046	3046					0.0018058679256682808
ATDIPSSQK	9	Unmodified	_ATDIPSSQK_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;APC|p.R1687Tfs*13|1|0.33|ENSG00000134982|chr5:112840647-112840648|-/A|frameshift_variant;APC|p.I1304Kfs*2|1|0.18|ENSG00000134982|chr5:112839500-112839506|GCAAATA/-|frameshift_variant	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	473.745639	945.476725	0.02207	1.0456E-05	0.32026	0.00015172	0.34233	0.00016218	473.7456977509054	16.639	0.91779	16.525	16.166	17.084	-0.11434	-0.018834	0.00010575	NaN	57.722	71	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	398320			2437	3835	1297	1297							0.0018058679256682808
ATDKSFVEK	9	Unmodified	_ATDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7689208984375	2	512.769114	1023.52368	0.12544	6.4321E-05	0.047827	2.4524E-05	0.17327	8.8845E-05	512.7696832057491	15.859	1.4805	15.859	15.445	16.925	0					175	51	5	0	0	0	3.9524E-05	3	1112	1112;1159;1175		150.62	50.864	1	7334300			2438	1574;1970;3708	1298	1298	3047;3048;3049	3047					0.01285446343717922
ATDKSFVEK	9	Unmodified	_ATDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.76904296875	2	512.769114	1023.52368	0.048207	2.4719E-05	0.1511	7.7479E-05	0.19931	0.0001022	512.7697090696458	15.976	1.4293	15.862	15.431	16.861	-0.11434					153	49	5	0	0	0	0.000109	2	1144	1144;1189		139.38	49.977	1	7185500			2439	1574;1970;3708	1298	1298	3050;3051	3050					0.01285446343717922
ATDKSFVEK	9	Unmodified	_ATDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.77001953125	2	512.769114	1023.52368	0.053547	2.7457E-05	0.11979	6.1423E-05	0.17333	8.8881E-05	512.7696701628649	15.885	1.4589	15.822	15.426	16.885	-0.062534					163	50	5	0	0	0	6.0404E-05	2	1170	1121;1170		147.24	49.977	1	7331100			2440	1574;1970;3708	1298	1298	3052;3053	3053					0.01285446343717922
ATDLTFLEK	9	Unmodified	_ATDLTFLEK_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.P889Lfs*40|1|0.02|ENSG00000197879|chr17:1468441-1468442|-/TTGCA|frameshift_variant;ENST00000573961.1_1_17:1380797-1381223:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2794799804688	2	519.279315	1036.54408	0.63453	0.0003295	-0.15601	-8.1012E-05	0.47852	0.00024848	519.2791741444632	50.305	0.67795	50.305	49.976	50.654	0					41	21	3	0	0	0	0.000604	1	11648	11648		121.35	65.169	1	578020			2441	8008	1299	1299	3054	3054					0.027266170035318282
ATDLTFLEK	9	Unmodified	_ATDLTFLEK_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.P889Lfs*40|1|0.02|ENSG00000197879|chr17:1468441-1468442|-/TTGCA|frameshift_variant;ENST00000573961.1_1_17:1380797-1381223:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2792358398438	2	519.279315	1036.54408	0.91139	0.00047327	-0.67284	-0.00034939	0.23855	0.00012388	519.2789666524856	50.289	0.69873	50.31	50.014	50.712	0.020691					51	24	3	0	0	0	0.044909	1	11692	11692		78.06	36.221	1	600420			2442	8008	1299	1299	3055	3055					0.027266170035318282
ATDLTFLEK	9	Unmodified	_ATDLTFLEK_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.P889Lfs*40|1|0.02|ENSG00000197879|chr17:1468441-1468442|-/TTGCA|frameshift_variant;ENST00000573961.1_1_17:1380797-1381223:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	519.279315	1036.54408	0.91226	0.00047372	-0.58766	-0.00030516	0.3246	0.00016856	519.2790351297579	50.262	0.62063	50.307	50.033	50.654	0.044891	-0.00048161	-0.0001233	NaN	121.35	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	668050			2443	8008	1299	1299							0.027266170035318282
ATDPKAIGH	9	Unmodified	_ATDPKAIGH_					0	0	0		nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B;ENST00000496131.1_1_1:44442124-44442513:+|nuORF	nc|ENSG00000117410|Q99437-2|ATP6V0B	nc|ENSG00000117410|Q99437-2|ATP6V0B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.24273681640625	2	455.243067	908.47158	-0.17854	-8.1278E-05	-1.399	-0.00063688	-1.5775	-0.00071816	455.24233886182	14.284	0.50531	14.284	14.086	14.591	0					44	17	3	0	0	0	0.016723	2	658	658;710		69.105	38.468	1	441140			2444	2791	1300	1300	3056;3057	3056					0.013683277206041566
ATDPKAIGH	9	Unmodified	_ATDPKAIGH_					0	0	0		nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B;ENST00000496131.1_1_1:44442124-44442513:+|nuORF	nc|ENSG00000117410|Q99437-2|ATP6V0B	nc|ENSG00000117410|Q99437-2|ATP6V0B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2424011230469	2	455.243067	908.47158	-0.13778	-6.2723E-05	-1.1943	-0.00054368	-1.332	-0.0006064	455.24239327966535	14.386	0.57415	14.282	14.049	14.623	-0.10466					46	19	3	0	0	0	0.014888	2	687	687;734		71.922	42.221	1	419530			2445	2791	1300	1300	3058;3059	3058					0.013683277206041566
ATDPKAIGH	9	Unmodified	_ATDPKAIGH_					0	0	0		nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B;ENST00000496131.1_1_1:44442124-44442513:+|nuORF	nc|ENSG00000117410|Q99437-2|ATP6V0B	nc|ENSG00000117410|Q99437-2|ATP6V0B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2420349121094	2	455.243067	908.47158	-0.18556	-8.4474E-05	-1.3943	-0.00063473	-1.5798	-0.0007192	455.242332639218	14.37	0.51818	14.304	14.07	14.588	-0.066068					43	18	3	0	0	0	0.014206	2	730	683;730		72.968	43.886	1	447620			2446	2791	1300	1300	3060;3061	3061					0.013683277206041566
ATDPNILGR	9	Unmodified	_ATDPNILGR_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;ENST00000536483.1_1_8:48686736-48691238:-|nuORF	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7620544433594	2	478.761623	955.508694	0.49585	0.00023739	-0.52218	-0.00025	-0.026327	-1.2604E-05	478.7618018919764	33.885	1.2392	33.885	33.512	34.751	0					146	44	6	0	0	0	2.973E-07	3	6615	6567;6615;6663		168.54	61.35	1	3633200			2447	8602	1301	1301	3062;3063;3064	3063					0.02915999266383551
ATDPNILGR	9	Unmodified	_ATDPNILGR_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;ENST00000536483.1_1_8:48686736-48691238:-|nuORF	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.76226806640625	2	478.761623	955.508694	0.77536	0.00037121	-0.83587	-0.00040018	-0.060511	-2.897E-05	478.7616849764965	33.732	1.2455	33.798	33.458	34.704	0.066357					143	44	6	0	0	0	6.5985E-11	3	6577	6532;6577;6620		181.69	62.796	1	3755100			2448	8602	1301	1301	3065;3066;3067	3066					0.02915999266383551
ATDPNILGR	9	Unmodified	_ATDPNILGR_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;ENST00000536483.1_1_8:48686736-48691238:-|nuORF	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7622375488281	2	478.761623	955.508694	0.10737	5.1406E-05	-0.22483	-0.00010764	-0.11746	-5.6235E-05	478.76198979102725	33.702	1.2229	33.768	33.441	34.664	0.066704					138	43	6	0	0	0	0.00024732	3	6567	6522;6567;6620		132.38	36.269	1	3625800			2449	8602	1301	1301	3068;3069;3070	3069					0.02915999266383551
ATDPTIHTV	9	Unmodified	_ATDPTIHTV_					0	0	0		nc|ENSG00000086848|Q9H6U8-4|ALG9;ENSG00000086848|ENST00000616540|ALG9;nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9	nc|ENSG00000086848|Q9H6U8-4|ALG9	nc|ENSG00000086848|Q9H6U8-4|ALG9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7493591308594	2	477.748182	953.481811	0.34557	0.00016509	1.0166	0.00048567	1.3622	0.00065077	477.7486584431072	29.538	0.36481	29.538	29.385	29.75	0					20	12	2	0	0	0	0.044952	1	5303	5303		54.774	20.372	1	123950			2450	1288	1302	1302	3071	3071					0.0032089065518903226
ATDPTIHTV	9	Unmodified	_ATDPTIHTV_					0	0	0		nc|ENSG00000086848|Q9H6U8-4|ALG9;ENSG00000086848|ENST00000616540|ALG9;nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9	nc|ENSG00000086848|Q9H6U8-4|ALG9	nc|ENSG00000086848|Q9H6U8-4|ALG9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	477.748182	953.481811	0.057947	2.7684E-05	0.79453	0.00037958	0.85248	0.00040727	477.7484211793493	29.498	0.32398	29.511	29.329	29.653	0.013474	-0.013063	-0.0001633	NaN	54.774	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108010			2451	1288	1302	1302							0.0032089065518903226
ATDQPVIRG	9	Unmodified	_ATDQPVIRG_					0	0	0		ENSG00000079841|ENST00000521978|RIMS1	ENSG00000079841|ENST00000521978|RIMS1	ENSG00000079841|ENST00000521978|RIMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.76177978515625	2	478.761623	955.508694	0.10737	5.1406E-05	-0.22483	-0.00010764	-0.11746	-5.6235E-05	478.76198979102725	33.702	1.2229	33.768	33.441	34.664	0.066704					138	43	6	0	0	0	0.14786	1	6689	6689		31.268	0	1	3625800			2452	1143	1303	1303	3072	3072					0.02915999266383551
ATDQRIENEY	10	Unmodified	_ATDQRIENEY_					0	0	0			REV__ENSG00000136111|ENST00000377636|TBC1D4	REV__ENSG00000136111|ENST00000377636|TBC1D4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.526611328125	3	413.526441	1237.55749	-0.089675	-3.7083E-05	0.28566	0.00011813	0.19599	8.1047E-05	413.52666350000317	25.066	0.68508	25.066	24.79	25.475	0					65	23	4	0	0	0	0.40344	1	3978	3978		2.8433	0	1	420900	+		2453	15790	1304	1304	3073	3073					-0.051781769551553225
ATDYDTSTL	9	Unmodified	_ATDYDTSTL_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7976989746094	2	493.719287	985.424021	0.52339	0.00025841	0.97983	0.00048376	1.5032	0.00074217	493.7190630686551	45.082	0.16956	45.151	45.062	45.232	0.068569					8	5	2	0	0	0	0.21905	1	10062	10062		23.148	2.2772	1	63100	+		2454	16663	1305	1305	3074	3074					-0.06927416060909763
ATEESFFILK	10	Unmodified	_ATEESFFILK_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.8131713867188	2	592.813522	1183.61249	0.27125	0.0001608	0.22852	0.00013547	0.49977	0.00029627	592.8135487495001	61.586	0.95941	61.586	61.281	62.24	0					86	35	4	0	0	0	1.3419E-08	3	15096	15096;15143;15194		163.69	123.74	1	3919600			2455	7453	1306	1306	3075;3076;3077	3075					0.02802861583381855
ATEESFFILK	10	Unmodified	_ATEESFFILK_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.8136596679688	2	592.813522	1183.61249	0.063829	3.7839E-05	0.36328	0.00021536	0.42711	0.0002532	592.813636067933	61.44	0.9291	61.537	61.299	62.228	0.096985					85	33	4	0	0	0	3.0264E-09	2	15112	15063;15112		176.43	128.68	1	3519600			2456	7453	1306	1306	3078;3079	3079					0.02802861583381855
ATEESFFILK	10	Unmodified	_ATEESFFILK_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.8136596679688	2	592.813522	1183.61249	0.081737	4.8455E-05	0.36116	0.0002141	0.4429	0.00026255	592.8136114213883	61.565	0.87016	61.556	61.271	62.141	-0.0094566					81	31	4	0	0	0	3.0264E-09	3	15123	15077;15123;15169		176.43	128.68	1	4063200			2457	7453	1306	1306	3080;3081;3082	3081					0.02802861583381855
ATEHDRSWYK	10	Unmodified	_ATEHDRSWYK_					0	0	0		ENSG00000198793|ENST00000361445|MTOR;ENST00000495435.1_1_1:11193031-11204809:-|nuORF	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.18634033203125	3	431.538793	1291.59455	-0.23767	-0.00010256	-0.40176	-0.00017338	-0.63943	-0.00027594	431.5387429265983	39.95	0.53537	39.95	39.723	40.259	0					40	18	3	0	0	0	0.31942	1	8523	8523		3.5871	1.3343	1	250550			2458	8126	1307	1307	3083	3083					-0.03958460618787285
ATEHLSTLSEK	11	Unmodified	_ATEHLSTLSEK_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.87847900390625	3	405.878704	1214.61428	-0.21534	-8.7403E-05	-0.45415	-0.00018433	-0.66949	-0.00027173	405.87859413056486	22.131	0.43528	22.081	21.855	22.29	-0.049377					31	15	3	0	0	0	0.432	1	3054	3054		7.0341	0.79976	1	89151			2459	2817	1308	1308	3084	3084					0.015558706013280243
ATEIILGLE	9	Unmodified	_ATEIILGLE_					0	0	0		ENSG00000100077|ENST00000324198|GRK3	ENSG00000100077|ENST00000324198|GRK3	ENSG00000100077|ENST00000324198|GRK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.76385498046875	2	479.776408	957.538263	0.20437	9.8054E-05	-0.39852	-0.0001912	-0.19415	-9.3148E-05	479.7761610879282	19.513	0.74995	19.397	19.177	19.927	-0.11592					43	25	2	0	0	0	0.24581	1	2222	2222		16.942	2.3606	1	80261			2460	1528	1309	1309	3085	3085					0.057795184918518316
ATEIILGLE	9	Unmodified	_ATEIILGLE_					0	0	0		ENSG00000100077|ENST00000324198|GRK3	ENSG00000100077|ENST00000324198|GRK3	ENSG00000100077|ENST00000324198|GRK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7637634277344	2	479.776408	957.538263	0.26724	0.00012821	-0.26912	-0.00012912	-0.0018824	-9.0311E-07	479.7762456315468	19.494	0.72968	19.438	19.2	19.93	-0.055693					54	25	3	0	0	0	0.24581	1	2217	2217		16.942	2.3606	1	94497			2461	1528	1309	1309	3086	3086					0.057795184918518316
ATEKRQLE	8	Unmodified	_ATEKRQLE_					0	0	0		nc|ENSG00000204053|P12525|MYCLP1	nc|ENSG00000204053|P12525|MYCLP1	nc|ENSG00000204053|P12525|MYCLP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7503967285156	2	487.766906	973.519259	0.44949	0.00021925	1.8009	0.00087842	2.2504	0.0010977	487.76958757619	33.599	0.84896	33.599	33.174	34.023	0					59	30	3	0	0	0	0.28235	1	6537	6537		38.151	0	1	138370			2462	12905	1310	1310	3087	3087					0.031439819208117115
ATEQEDAAVAK	11	Unmodified	_ATEQEDAAVAK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.7774658203125	2	566.777667	1131.54078	0.16855	9.553E-05	0.053451	3.0295E-05	0.222	0.00012583	566.7776816543925	16.611	0.5466	16.611	16.405	16.952	0					38	18	3	0	0	0	0.22144	2	1356	1356;1404		29.281	17.842	1	170950			2463	3239	1311	1311	3088;3089	3088					-0.019726778411495616
ATEQEDAAVAK	11	Unmodified	_ATEQEDAAVAK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.7774047851562	2	566.777667	1131.54078	0.1744	9.8845E-05	0.33338	0.00018895	0.50778	0.0002878	566.7778316215644	16.716	0.57329	16.601	16.395	16.968	-0.11434					43	20	3	0	0	0	0.066191	1	1403	1403		48.561	27.98	1	178500			2464	3239	1311	1311	3090	3090					-0.019726778411495616
ATEQEDAAVAK	11	Unmodified	_ATEQEDAAVAK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.7778930664062	2	566.777667	1131.54078	0.25258	0.00014316	0.21318	0.00012083	0.46576	0.00026398	566.7777161744465	16.622	0.59212	16.56	16.351	16.943	-0.062534					42	20	3	0	0	0	0.023365	1	1373	1373		60.943	40.363	1	160770			2465	3239	1311	1311	3091	3091					-0.019726778411495616
ATEQPLTAK	9	Unmodified	_ATEQPLTAK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7638854980469	2	479.763832	957.513111	-0.015546	-7.4584E-06	0.0024624	1.1814E-06	-0.013084	-6.277E-06	479.7638903767552	18.846	1.5103	18.846	18.535	20.045	0					145	53	5	0	0	0	2.6179E-07	4	2057	2013;2057;2100;2147		169.92	77.432	1	3393400			2466	2962	1312	1312	3092;3093;3094;3095	3093					0.032654636892857525
ATEQPLTAK	9	Unmodified	_ATEQPLTAK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7639465332031	2	479.763832	957.513111	0.073478	3.5252E-05	-0.049749	-2.3868E-05	0.023729	1.1384E-05	479.7638633285773	18.997	1.5407	18.879	18.556	20.096	-0.11739					160	53	5	0	0	0	6.3871E-05	4	2095	2051;2095;2138;2179		146.68	80.641	1	3487500			2467	2962	1312	1312	3096;3097;3098;3099	3097					0.032654636892857525
ATEQPLTAK	9	Unmodified	_ATEQPLTAK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.763916015625	2	479.763832	957.513111	0.027617	1.325E-05	-0.03599	-1.7267E-05	-0.0083728	-4.017E-06	479.76386162953827	18.942	1.4613	18.884	18.57	20.031	-0.058172					158	51	5	0	0	0	2.6179E-07	4	2077	2030;2077;2118;2166		169.92	77.432	1	3662300			2468	2962	1312	1312	3100;3101;3102;3103	3101					0.032654636892857525
ATEQPLTAKK	10	Unmodified	_ATEQPLTAKK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.8114624023438	2	543.811313	1085.60807	0.1677	9.1195E-05	0.13898	7.5579E-05	0.30668	0.00016677	543.8113329354367	14.61	0.47654	14.61	14.423	14.9	0					41	16	3	0	0	0	0.067258	1	780	780		55.235	38.122	1	221940			2469	2962	1313	1313	3104	3104					0.06869397160448898
ATEQPLTAKK	10	Unmodified	_ATEQPLTAKK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.811279296875	2	543.811313	1085.60807	0.30442	0.00016555	0.0024672	1.3417E-06	0.30689	0.00016689	543.8112679320379	14.726	0.48114	14.622	14.454	14.935	-0.10466					37	16	3	0	0	0	0.14624	1	815	815		39.213	26.972	1	222700			2470	2962	1313	1313	3105	3105					0.06869397160448898
ATEQPLTAKK	10	Unmodified	_ATEQPLTAKK_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.8113403320312	2	543.811313	1085.60807	0.27689	0.00015058	-0.073426	-3.993E-05	0.20347	0.00011065	543.8111556507528	14.739	0.47237	14.673	14.51	14.982	-0.066068					48	16	4	0	0	0	0.093324	1	821	821		49.527	33.378	1	209350			2471	2962	1313	1313	3106	3106					0.06869397160448898
ATESGMLYH	9	Oxidation (M)	_ATESGM(Oxidation (M))LYH_		ATESGM(1)LYH		ATESGM(71)LYH	0	0	1		ENST00000574867.5_1_17:5292093-5322970:-|nuORF;NUP88|p.E694Vfs*31|1|0.04|ENSG00000108559|chr17:5386789-5386790|-/AGTA|frameshift_variant;ENSG00000108559|ENST00000573584|NUP88	ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENST00000574867.5_1_17:5292093-5322970:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7242431640625	2	512.723849	1023.43315	0.16416	8.4166E-05	0.60669	0.00031106	0.77085	0.00039523	512.7241153863642	22.389	0.83098	22.389	22.105	22.936	0					54	28	3	0	0	0	0.015674	2	3169	3116;3169		70.716	51.497	1	123510			2472	2194	1314	1314	3107;3108	3108		269			-0.07763345976218261
ATESGMLYH	9	Oxidation (M)	_ATESGM(Oxidation (M))LYH_		ATESGM(1)LYH		ATESGM(51)LYH	0	0	1		ENST00000574867.5_1_17:5292093-5322970:-|nuORF;NUP88|p.E694Vfs*31|1|0.04|ENSG00000108559|chr17:5386789-5386790|-/AGTA|frameshift_variant;ENSG00000108559|ENST00000573584|NUP88	ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENST00000574867.5_1_17:5292093-5322970:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7241821289062	2	512.723849	1023.43315	0.1044	5.3527E-05	0.47805	0.00024511	0.58244	0.00029863	512.7241004295621	22.613	0.7962	22.525	22.086	22.883	-0.087608					52	28	2	0	0	0	0.055495	3	3176	3126;3176;3223		50.855	33.913	1	128100			2473	2194	1314	1314	3109;3110;3111	3110		269			-0.07763345976218261
ATESGMLYH	9	Oxidation (M)	_ATESGM(Oxidation (M))LYH_		ATESGM(1)LYH		ATESGM(85)LYH	0	0	1		ENST00000574867.5_1_17:5292093-5322970:-|nuORF;NUP88|p.E694Vfs*31|1|0.04|ENSG00000108559|chr17:5386789-5386790|-/AGTA|frameshift_variant;ENSG00000108559|ENST00000573584|NUP88	ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENST00000574867.5_1_17:5292093-5322970:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7247314453125	2	512.723849	1023.43315	0.032374	1.6599E-05	0.63688	0.00032654	0.66926	0.00034314	512.7241613922937	22.603	0.84787	22.558	22.156	23.004	-0.044867					50	29	2	0	0	0	0.0061338	2	3177	3130;3177		85.357	63.61	1	131250			2474	2194	1314	1314	3112;3113	3113		269			-0.07763345976218261
ATETELVQK	9	Unmodified	_ATETELVQK_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.78759765625	2	509.774396	1017.53424	0.16523	8.4232E-05	0.46802	0.00023858	0.63325	0.00032282	509.7745784467859	23.708	0.51626	23.708	23.513	24.029	0					33	17	3	0	0	0	0.24787	1	3500	3500		15.248	3.7538	1	109370			2475	5043	1315	1315	3114	3114					0.026174289981554466
ATETELVQK	9	Unmodified	_ATETELVQK_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7877502441406	2	509.774396	1017.53424	0.19373	9.8761E-05	0.047543	2.4236E-05	0.24128	0.000123	509.77431708727005	23.723	0.4969	23.651	23.501	23.997	-0.072559					28	16	2	0	0	0	0.20381	1	3544	3544		29.841	16.798	1	96592			2476	5043	1315	1315	3115	3115					0.026174289981554466
ATETSGPTYIK	11	Unmodified	_ATETSGPTYIK_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2976684570312	2	584.298236	1166.58192	0.070636	4.1272E-05	-0.48075	-0.0002809	-0.41011	-0.00023963	584.2977137707186	27.676	0.4059	27.676	27.408	27.814	0					33	13	3	0	0	0	0.091141	1	4729	4729		41.347	29.106	1	155800			2477	3715	1316	1316	3116	3116					0.005290831983302269
ATETSGPTYIK	11	Unmodified	_ATETSGPTYIK_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.29736328125	2	584.298236	1166.58192	0.0030092	1.7583E-06	-0.2947	-0.00017219	-0.29169	-0.00017043	584.2976845491067	27.631	0.39902	27.619	27.438	27.837	-0.01156					22	13	2	0	0	0	0.036631	1	4724	4724		57.108	28.613	1	171650			2478	3715	1316	1316	3117	3117					0.005290831983302269
ATETSGPTYIK	11	Unmodified	_ATETSGPTYIK_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	584.298236	1166.58192	-0.025943	-1.5159E-05	-0.44652	-0.0002609	-0.47246	-0.00027606	584.2974811676175	27.604	0.42691	27.582	27.349	27.776	-0.021412	-0.043592	-2.4759E-05	NaN	57.108	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196600			2479	3715	1316	1316							0.005290831983302269
ATEWITFQVK	10	Unmodified	_ATEWITFQVK_					0	0	0		ENSG00000052841|ENST00000039989|TTC17;ENST00000534417.1_1_11:43457781-43465839:+|nuORF;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.22650146484375	3	408.220401	1221.63937	-0.13101	-5.348E-05	-0.74412	-0.00030377	-0.87513	-0.00035725	408.2205927116929	25.153	0.14687	25.153	25.035	25.182	0					7	4	2	0	0	0	0.3001	1	3974	3974		13.519	2.6197	1	45005			2480	675;12574	1317	1317	3118	3118					0.03741970194550959
ATFDISLVVPK	11	Unmodified	_ATFDISLVVPK_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.3450927734375	2	595.344989	1188.67542	0.39699	0.00023635	-1.1171	-0.00066505	-0.7201	-0.00042871	595.3447594648823	69.165	0.49812	69.165	68.9	69.398	0					42	17	3	0	0	0	0.00539	1	17485	17485		79.427	45.982	1	244020			2481	4363	1318	1318	3119	3119					0.08863427371420585
ATFDISLVVPK	11	Unmodified	_ATFDISLVVPK_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.3451538085938	2	595.344989	1188.67542	0.53284	0.00031723	-0.23	-0.00013693	0.30285	0.0001803	595.3447455335131	69.131	0.47009	69.203	68.964	69.434	0.071945					29	16	2	0	0	0	0.00539	1	17469	17469		79.427	45.982	1	244320			2482	4363	1318	1318	3120	3120					0.08863427371420585
ATFDISLVVPK	11	Unmodified	_ATFDISLVVPK_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	595.344989	1188.67542	0.35334	0.00021036	-1.6788	-0.00099946	-1.3255	-0.0007891	595.3447895922374	69.162	0.48544	69.143	68.921	69.407	-0.019157	-0.027049	-0.0012815	NaN	79.427	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185090			2483	4363	1318	1318							0.08863427371420585
ATFERVLLR	9	Unmodified	_ATFERVLLR_					0	0	0		ENSG00000152402|ENST00000526355|GUCY1A2;nc|ENSG00000152402|P33402-3|GUCY1A2;nc|ENSG00000152402|P33402-2|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.6994018554688	2	552.82984	1103.64513	0.29083	0.00016078	0.37048	0.00020481	0.66131	0.00036559	552.829827028349	41.186	0.55514	41.276	40.927	41.482	0.090248					22	15	2	0	0	0	0.22143	1	8839	8839		24.991	6.8446	1	343400			2484	5018	1319	1319	3121	3121					0.09745113496887825
ATFERVLLR	9	Unmodified	_ATFERVLLR_					0	0	0		ENSG00000152402|ENST00000526355|GUCY1A2;nc|ENSG00000152402|P33402-3|GUCY1A2;nc|ENSG00000152402|P33402-2|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	552.82984	1103.64513	0.22448	0.0001241	0.72584	0.00040127	0.95032	0.00052537	552.8301083364165	41.469	0.27804	41.469	41.225	41.504	0	0.09644	0.00011093	NaN	24.991	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	536370			2485	5018	1319	1319							0.09745113496887825
ATFFGEVVK	9	Unmodified	_ATFFGEVVK_					0	0	0		ENSG00000183527|ENST00000331573|PSMG1;PSMG1|p.E207Dfs*5|1|0.15|ENSG00000183527|chr21:39178483-39178483|T/-|frameshift_variant;nc|ENSG00000183527|O95456-2|PSMG1	ENSG00000183527|ENST00000331573|PSMG1	ENSG00000183527|ENST00000331573|PSMG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.27142333984375	2	499.271293	996.528032	0.36516	0.00018232	0.20986	0.00010478	0.57503	0.00028709	499.2712381668176	51.8	0.59274	51.8	51.481	52.074	0					51	21	3	0	0	0	0.016571	1	12104	12104		69.338	32.832	1	1150800			2486	7374	1320	1320	3122	3122					0.029629555573023936
ATFFGEVVK	9	Unmodified	_ATFFGEVVK_					0	0	0		ENSG00000183527|ENST00000331573|PSMG1;PSMG1|p.E207Dfs*5|1|0.15|ENSG00000183527|chr21:39178483-39178483|T/-|frameshift_variant;nc|ENSG00000183527|O95456-2|PSMG1	ENSG00000183527|ENST00000331573|PSMG1	ENSG00000183527|ENST00000331573|PSMG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.27130126953125	2	499.271293	996.528032	0.3857	0.00019257	0.14693	7.3359E-05	0.53263	0.00026593	499.2711856129606	51.747	0.57689	51.793	51.479	52.056	0.046577					52	20	3	0	0	0	0.015027	2	12077	12077;12105		71.708	35.581	1	1246600			2487	7374	1320	1320	3123;3124	3123					0.029629555573023936
ATFFGEVVK	9	Unmodified	_ATFFGEVVK_					0	0	0		ENSG00000183527|ENST00000331573|PSMG1;PSMG1|p.E207Dfs*5|1|0.15|ENSG00000183527|chr21:39178483-39178483|T/-|frameshift_variant;nc|ENSG00000183527|O95456-2|PSMG1	ENSG00000183527|ENST00000331573|PSMG1	ENSG00000183527|ENST00000331573|PSMG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.271240234375	2	499.271293	996.528032	0.1676	8.3678E-05	0.47076	0.00023504	0.63836	0.00031872	499.2712637063444	51.906	0.80961	51.906	51.631	52.44	-0.00081253					59	29	3	0	0	0	0.016571	2	12124	12090;12124		69.338	21.744	1	1116100			2488	7374	1320	1320	3125;3126	3126					0.029629555573023936
ATFFGIQLLK	10	Unmodified	_ATFFGIQLLK_					0	0	0		ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.337158203125	2	569.336967	1136.65938	0.12637	7.1946E-05	0.16974	9.664E-05	0.29611	0.00016859	569.3368579744867	76.298	0.76312	76.298	76.049	76.812	0					75	26	4	0	0	0	0.0012219	2	19626	19626;19678		117.84	81.331	1	1329100			2489	11923	1321	1321	3127;3128	3127					0.09651765925195832
ATFFGIQLLK	10	Unmodified	_ATFFGIQLLK_					0	0	0		ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3369750976562	2	569.336967	1136.65938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.235	1	76.289	75.789	76.789	0.053413								0	0	0	1.1211E-22	1	19617	19617		176.43	116.35	1				2490	11923	1321	1321	3129	3129					0.09651765925195832
ATFFGIQLLK	10	Unmodified	_ATFFGIQLLK_					0	0	0		ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3369140625	2	569.336967	1136.65938	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.404	1	76.457	75.957	76.957	0.053413								0	0	0	1.0585E-05	1	19667	19667		107.56	69.388	1				2491	11923	1321	1321	3130	3130					0.09651765925195832
ATFFGIQLLK	10	Unmodified	_ATFFGIQLLK_					0	0	0		ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.3370361328125	2	569.336967	1136.65938	0.32246	0.00018359	0.078302	4.458E-05	0.40076	0.00022817	569.3367733105396	76.357	0.77953	76.325	76.049	76.828	-0.031487					69	28	3	0	0	0	1.3419E-08	3	19661	19616;19661;19713		163.69	111.42	1	1884300			2492	11923	1321	1321	3131;3132;3133	3132					0.09651765925195832
ATFGTFESILR	11	Unmodified	_ATFGTFESILR_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.3295288085938	2	621.32987	1240.64519	0.25716	0.00015978	-0.024711	-1.5354E-05	0.23245	0.00014443	621.3296436424439	67.281	0.51282	67.281	67.048	67.561	0					39	17	4	0	0	0	0.00539	1	16888	16888		79.427	60.065	1	248540			2493	3935	1322	1322	3134	3134					0.03449068706231628
ATFGTFESILR	11	Unmodified	_ATFGTFESILR_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.329833984375	2	621.32987	1240.64519	0.032725	2.0333E-05	0.46647	0.00028983	0.49919	0.00031016	621.3302374349216	67.279	0.44162	67.262	67.009	67.451	-0.016296					31	14	3	0	0	0	0.006514	1	16877	16877		77.049	59.936	1	250650			2494	3935	1322	1322	3135	3135					0.03449068706231628
ATFGTFESILR	11	Unmodified	_ATFGTFESILR_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	621.32987	1240.64519	0.026394	1.64E-05	0.080892	5.0261E-05	0.10729	6.666E-05	621.3302154576605	67.109	0.36755	67.187	66.986	67.354	0.078041	-0.056522	-0.00018815	NaN	79.427	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266380			2495	3935	1322	1322							0.03449068706231628
ATFGTQVVEK	10	Unmodified	_ATFGTQVVEK_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2911376953125	2	540.290214	1078.56587	0.84156	0.00045469	0.59541	0.00032169	1.437	0.00077638	540.290538727449	33.866	0.42802	33.866	33.646	34.074	0					27	15	2	0	0	0	0.0024771	1	6629	6629		106.37	69.29	1	578190			2496	3225	1323	1323	3136	3136					0.029734217520854145
ATFGTQVVEK	10	Unmodified	_ATFGTQVVEK_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	540.290214	1078.56587	1.0228	0.00055261	0.60192	0.00032521	1.6247	0.00087782	540.290482459876	33.706	0.41692	33.773	33.566	33.983	0.06636	-0.041162	-0.0001186	NaN	106.37	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	578450			2497	3225	1323	1323							0.029734217520854145
ATFGTQVVEK	10	Unmodified	_ATFGTQVVEK_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	540.290214	1078.56587	0.38493	0.00020797	1.0221	0.00055225	1.4071	0.00076022	540.2907047301229	33.736	0.3615	33.803	33.577	33.939	0.0667	-0.01131	0.00033549	NaN	106.37	24	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	479870			2498	3225	1323	1323							0.029734217520854145
ATFHTPFSH	9	Unmodified	_ATFHTPFSH_					0	0	0		ENST00000380120.6_1_6:4116110-4130812:-|nuORF;ECI2|p.F321Sfs*14|1|0.17|ENSG00000198721|chr6:4117375-4117375|A/-|frameshift_variant;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2;ENST00000464583.5_1_6:4119386-4125894:-|nuORF;ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF	ENST00000380120.6_1_6:4116110-4130812:-|nuORF	ENST00000380120.6_1_6:4116110-4130812:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.810546875	2	522.748516	1043.48248	0.87903	0.00045951	-0.26693	-0.00013954	0.61211	0.00031998	523.2496765698752	37.325	0.66753	37.325	37.039	37.707	0					50	23	3	0	0	0	0.2451	1	7699	7699		15.847	7.937	1	257240			2499	278	1324	1324	3137	3137					-0.037522699050896335
ATFHTPFSH	9	Unmodified	_ATFHTPFSH_					0	0	0		ENST00000380120.6_1_6:4116110-4130812:-|nuORF;ECI2|p.F321Sfs*14|1|0.17|ENSG00000198721|chr6:4117375-4117375|A/-|frameshift_variant;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2;ENST00000464583.5_1_6:4119386-4125894:-|nuORF;ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF	ENST00000380120.6_1_6:4116110-4130812:-|nuORF	ENST00000380120.6_1_6:4116110-4130812:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7781372070312	2	522.748516	1043.48248	0.49783	0.00026024	0.54085	0.00028273	1.0387	0.00054296	523.2503516696697	37.152	0.7908	37.239	36.815	37.605	0.08741					49	28	3	0	0	0	0.20651	1	7657	7657		20.454	7.9221	1	211530			2500	278	1324	1324	3138	3138					-0.037522699050896335
ATFHTPFSH	9	Unmodified	_ATFHTPFSH_					0	0	0		ENST00000380120.6_1_6:4116110-4130812:-|nuORF;ECI2|p.F321Sfs*14|1|0.17|ENSG00000198721|chr6:4117375-4117375|A/-|frameshift_variant;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2;ENST00000464583.5_1_6:4119386-4125894:-|nuORF;ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF	ENST00000380120.6_1_6:4116110-4130812:-|nuORF	ENST00000380120.6_1_6:4116110-4130812:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7776489257812	2	522.748516	1043.48248	0.59446	0.00031076	0.076336	3.9904E-05	0.6708	0.00035066	523.2497326889908	37.157	0.85968	37.25	36.764	37.624	0.093014					51	31	2	0	0	0	0.2322	1	7622	7622		14.838	11.242	1	223480			2501	278	1324	1324	3139	3139					-0.037522699050896335
ATFISVQLK	9	Unmodified	_ATFISVQLK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.80047607421875	2	503.800217	1005.58588	0.14565	7.3381E-05	0.33298	0.00016776	0.47864	0.00024114	503.80027489731896	51.916	0.61776	51.915	51.656	52.274	-0.00081253					54	22	3	0	0	0	0.20381	1	12162	12162		23.79	4.5328	1	1075300			2502	6434	1325	1325	3140	3140					0.08331217482714237
ATFISVQLK	9	Unmodified	_ATFISVQLK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	503.800217	1005.58588	0.3388	0.00017069	0.057456	2.8946E-05	0.39626	0.00019963	503.80008189287304	51.782	0.62921	51.829	51.595	52.224	0.046574	-0.018149	-0.00015787	NaN	23.79	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1079800			2503	6434	1325	1325							0.08331217482714237
ATFKYFYYL	9	Unmodified	_ATFKYFYYL_					0	0	0			REV__ENSG00000147896|ENST00000276943|IFNK	REV__ENSG00000147896|ENST00000276943|IFNK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5750732421875	3	405.874342	1214.6012	-0.25573	-0.0001038	0.11344	4.6043E-05	-0.14229	-5.7753E-05	405.8746779109765	28.821	0.46992	28.822	28.55	29.02	0.0004673					23	16	2	0	0	0	0.25689	1	5077	5077		7.609	3.0801	1	83302	+		2504	16409	1326	1326	3141	3141					0.0024808427990592463
ATFLDPRYK	9	Unmodified	_ATFLDPRYK_					0	0	0		ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.80078125	2	555.800749	1109.58694	0.60925	0.00033862	-0.91003	-0.00050579	-0.30077	-0.00016717	555.8003109219123	37.024	0.86078	37.024	36.536	37.397	0					68	30	3	0	0	0	0.16685	1	7622	7622		28.495	14.588	1	568600			2505	8389	1327	1327	3142	3142					0.03653431851603273
ATFLDPRYK	9	Unmodified	_ATFLDPRYK_					0	0	0		ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8004760742188	2	555.800749	1109.58694	0.4156	0.00023099	-0.80233	-0.00044593	-0.38673	-0.00021494	555.8003359431968	36.878	0.96547	36.965	36.367	37.332	0.087406					79	34	4	0	0	0	0.07848	1	7558	7558		42.312	24.166	1	654370			2506	8389	1327	1327	3143	3143					0.03653431851603273
ATFLDPRYK	9	Unmodified	_ATFLDPRYK_					0	0	0		ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8007202148438	2	555.800749	1109.58694	0.55568	0.00030884	-0.89241	-0.000496	-0.33673	-0.00018716	555.8004095572102	36.896	0.98576	36.989	36.377	37.363	0.093014					68	35	3	0	0	0	0.11813	1	7574	7574		35.612	22.57	1	634200			2507	8389	1327	1327	3144	3144					0.03653431851603273
ATFLGSLTGK	10	Unmodified	_ATFLGSLTGK_					0	0	0		CTRCC_cell_paper	CTRCC_cell_paper	CTRCC_cell_paper	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7827453613281	2	497.782025	993.549496	0.6932	0.00034506	0.46403	0.00023099	1.1572	0.00057605	497.7822429372923	50.96	1.2117	50.96	50.407	51.619	0					105	44	4	0	0	0	8.3317E-09	2	11859	11859;11908		169.92	100.98	1	7061600			2508	248	1328	1328	3145;3146	3145					0.052463405860066814
ATFLGSLTGK	10	Unmodified	_ATFLGSLTGK_					0	0	0		CTRCC_cell_paper	CTRCC_cell_paper	CTRCC_cell_paper	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.78253173828125	2	497.782025	993.549496	0.57084	0.00028415	0.47813	0.000238	1.049	0.00052215	497.78223119172014	50.958	0.93123	51.005	50.63	51.561	0.046577					105	34	6	0	0	0	8.3317E-09	2	11832	11832;11877		169.92	116.09	1	7340600			2509	248	1328	1328	3147;3148	3147					0.052463405860066814
ATFLGSLTGK	10	Unmodified	_ATFLGSLTGK_					0	0	0		CTRCC_cell_paper	CTRCC_cell_paper	CTRCC_cell_paper	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7826232910156	2	497.782025	993.549496	0.5692	0.00028334	0.51422	0.00025597	1.0834	0.0005393	497.7822552844607	51.05	0.88352	51.059	50.729	51.612	0.0095634					97	33	4	0	0	0	1.7694E-13	2	11875	11875;11923		182.24	110.31	1	7312900			2510	248	1328	1328	3149;3150	3149					0.052463405860066814
ATFLIQEYFRK	11	Unmodified	_ATFLIQEYFRK_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.5956726074219	3	472.594238	1414.76089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.529	1	41.626	41.126	42.126	0.096626								0	0	0	0.3674	1	8951	8951		4.4062	1.7749	1				2511	4934	1329	1329	3151	3151					0.07009592557074029
ATFPDPNVK	9	Unmodified	_ATFPDPNVK_					0	0	0		ENST00000529476.1_1_1:161011414-161013065:-|nuORF;USF1|p.G130Vfs*33|1|0.21|ENSG00000158773|chr1:161041734-161041734|C/-|frameshift_variant;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7588806152344	2	494.758549	987.502546	0.51804	0.0002563	-0.0288	-1.4249E-05	0.48924	0.00024206	494.7585193230107	36.061	1.4868	36.061	35.665	37.152	0					151	53	6	0	0	0	0.00051734	4	7268	7268;7316;7362;7417		128.93	75.1	1	5909700			2512	5372	1330	1330	3152;3153;3154;3155	3152					0.008294810348502324
ATFPDPNVK	9	Unmodified	_ATFPDPNVK_					0	0	0		ENST00000529476.1_1_1:161011414-161013065:-|nuORF;USF1|p.G130Vfs*33|1|0.21|ENSG00000158773|chr1:161041734-161041734|C/-|frameshift_variant;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.75885009765625	2	494.758549	987.502546	0.53263	0.00026352	0.015168	7.5044E-06	0.54779	0.00027103	494.7585311165475	35.91	1.2659	35.992	35.598	36.863	0.082355					129	45	5	0	0	0	0.0013924	5	7227	7180;7227;7276;7322;7379		117.76	72.061	1	6710400			2513	5372	1330	1330	3156;3157;3158;3159;3160	3157					0.008294810348502324
ATFPDPNVK	9	Unmodified	_ATFPDPNVK_					0	0	0		ENST00000529476.1_1_1:161011414-161013065:-|nuORF;USF1|p.G130Vfs*33|1|0.21|ENSG00000158773|chr1:161041734-161041734|C/-|frameshift_variant;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7586975097656	2	494.758549	987.502546	0.53299	0.0002637	-0.037029	-1.832E-05	0.49596	0.00024538	494.7585135256697	35.92	1.2949	36.007	35.597	36.892	0.08625					144	46	5	0	0	0	0.0023895	5	7257	7165;7212;7257;7302;7400		107.1	61.4	1	6446100			2514	5372	1330	1330	3161;3162;3163;3164;3165	3163					0.008294810348502324
ATFPETTT	8	Unmodified	_ATFPETTT_					0	0	0		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7590637207031	2	434.208358	866.402163	0.29737	0.00012912	0.37583	0.00016319	0.6732	0.00029231	434.208653628162	78.096	0.60104	78.154	77.927	78.528	0.058151					33	21	2	0	0	0	0.34218	1	20112	20112		5.2307	0	1	150410			2515	6397	1331	1331	3166	3166					-0.03638176018807826
ATFPETTT	8	Unmodified	_ATFPETTT_					0	0	0		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	434.208358	866.402163	0.45124	0.00019593	0.11721	5.0892E-05	0.56845	0.00024683	434.20855198318077	78.274	0.44466	78.244	77.926	78.37	-0.030426	0.055293	-0.00014395	NaN	5.2307	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133640			2516	6397	1331	1331							-0.03638176018807826
ATFPLSVQK	9	Unmodified	_ATFPLSVQK_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.78497314453125	2	495.784567	989.554582	0.36566	0.00018129	0.24577	0.00012185	0.61142	0.00030313	495.7847230652356	43.691	0.72884	43.691	43.414	44.143	0					65	26	3	0	0	0	0.00012746	2	9641	9591;9641		136.39	68.419	1	4850400			2517	2308	1332	1332	3167;3168	3168					0.05938644448622199
ATFPLSVQK	9	Unmodified	_ATFPLSVQK_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.78466796875	2	495.784567	989.554582	0.48965	0.00024276	-0.023241	-1.1523E-05	0.46641	0.00023124	495.78456521559406	43.535	0.84003	43.613	43.234	44.074	0.077515					74	30	3	0	0	0	0.0016724	3	9539	9539;9587;9604		114.19	60.998	1	4645300			2518	2308	1332	1332	3169;3170;3171	3169					0.05938644448622199
ATFPLSVQK	9	Unmodified	_ATFPLSVQK_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.78466796875	2	495.784567	989.554582	0.45289	0.00022453	0.13957	6.9195E-05	0.59245	0.00029373	495.7846814517903	43.481	0.8621	43.565	43.241	44.103	0.083996					79	31	3	0	0	0	8.0996E-05	2	9521	9521;9569		143.91	79.949	1	5115200			2519	2308	1332	1332	3172;3173	3172					0.05938644448622199
ATFPLSVQKF	10	Unmodified	_ATFPLSVQKF_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.3184814453125	2	569.318774	1136.623	0.3237	0.00018429	-0.094489	-5.3795E-05	0.22921	0.0001305	569.3186683897137	60.422	0.67558	60.422	60.175	60.851	0					70	24	4	0	0	0	1.0144E-05	2	14765	14765;14814		150.62	114.49	1	3648000			2520	2308	1333	1333	3174;3175	3174					0.06014889028483594
ATFPLSVQKF	10	Unmodified	_ATFPLSVQKF_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3182373046875	2	569.318774	1136.623	0.28142	0.00016022	-0.21581	-0.00012286	0.065614	3.7355E-05	569.318418195032	60.341	0.68647	60.436	60.18	60.866	0.095093					62	24	4	0	0	0	2.8213E-05	2	14721	14721;14773		139.38	103.25	1	4573700			2521	2308	1333	1333	3176;3177	3176					0.06014889028483594
ATFPLSVQKF	10	Unmodified	_ATFPLSVQKF_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.3186645507812	2	569.318774	1136.623	0.38356	0.00021837	-0.36699	-0.00020893	0.016574	9.4362E-06	569.3183261544257	60.424	0.61218	60.412	60.198	60.81	-0.011486					58	22	4	0	0	0	0.00069047	1	14809	14809		124.95	88.826	1	3639400			2522	2308	1333	1333	3178	3178					0.06014889028483594
ATFPSSAFLR	10	Unmodified	_ATFPSSAFLR_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7923583984375	2	548.792924	1095.57129	0.75247	0.00041295	-0.57516	-0.00031564	0.17731	9.7308E-05	548.7924923473269	54.664	0.85067	54.664	54.188	55.039	0					88	30	4	0	0	0	0.076018	1	13055	13055		53.317	36.204	1	994190			2523	8258	1334	1334	3179	3179					0.027331453345595946
ATFPSSAFLR	10	Unmodified	_ATFPSSAFLR_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.79296875	2	548.792924	1095.57129	0.77464	0.00042512	-0.51843	-0.00028451	0.25621	0.00014061	548.7923499145121	54.497	0.79679	54.56	54.192	54.989	0.063202					78	29	4	0	0	0	0.25422	1	13023	13023		26.021	6.7637	1	801880			2524	8258	1334	1334	3180	3180					0.027331453345595946
ATFPSSAFLR	10	Unmodified	_ATFPSSAFLR_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7927856445312	2	548.792924	1095.57129	0.78884	0.00043291	-0.70091	-0.00038466	0.087927	4.8254E-05	548.7924222137974	54.701	0.69421	54.685	54.361	55.055	-0.015919					78	24	4	0	0	0	0.29048	2	12981	12981;13086		21.59	6.7519	1	1035700			2525	8258	1334	1334	3181;3182	3181					0.027331453345595946
ATFQFTVER	9	Unmodified	_ATFQFTVER_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7828979492188	2	549.782556	1097.55056	0.58333	0.00032071	-0.45055	-0.0002477	0.13279	7.3003E-05	549.7827004959504	48.404	0.58781	48.404	48.106	48.694	0					49	20	3	0	0	0	0.00081117	1	11114	11114		125.18	72.913	1	1161400			2526	7691	1335	1335	3183	3183					0.005685549549070856
ATFQFTVER	9	Unmodified	_ATFQFTVER_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7828369140625	2	549.782556	1097.55056	0.80578	0.000443	0.34492	0.00018963	1.1507	0.00063263	549.7834683129327	48.375	1.2643	48.422	48.132	49.397	0.04752					75	46	3	0	0	0	0.001604	3	11079	11079;11121;11131		115.06	67.465	1	1131000			2527	7691	1335	1335	3184;3185;3186	3184					0.005685549549070856
ATFQFTVER	9	Unmodified	_ATFQFTVER_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7828979492188	2	549.782556	1097.55056	0.67714	0.00037228	-0.35742	-0.0001965	0.31972	0.00017578	549.7826569050113	48.277	0.49214	48.321	48.095	48.588	0.04332					44	18	3	0	0	0	0.0042709	1	11077	11077		92.201	60.933	1	1408700			2528	7691	1335	1335	3187	3187					0.005685549549070856
ATFQYIRKDP	10	Unmodified	_ATFQYIRKDP_					0	0	0			REV__ENSG00000005020|ENST00000345317|SKAP2	REV__ENSG00000005020|ENST00000345317|SKAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.86114501953125	3	413.555784	1237.64552	-0.095441	-3.947E-05	0.8048	0.00033283	0.70936	0.00029336	413.5562398683347	25.099	0.22444	25.099	24.986	25.21	0					10	7	2	0	0	0	0.32051	1	3926	3926		3.8763	0	1	54860	+		2529	13339	1336	1336	3188	3188					0.03620488426076918
ATFRYPFS	8	Unmodified	_ATFRYPFS_					0	0	0			REV__ENST00000431142.1_1_2:88272476-88272515:+|nuORF	REV__ENST00000431142.1_1_2:88272476-88272515:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7583923339844	2	494.747985	987.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.84	1	35.84	35.34	36.34	0								0	0	0	0.32762	1	7219	7219		24.674	1.5255	1		+		2530	20950	1337	1337	3189	3189					-0.012824842739973974
ATFSSSHRY	9	Unmodified	_ATFSSSHRY_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF;ENST00000507867.5_1_4:83798919-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2482299804688	2	528.24888	1054.48321	0.3538	0.00018689	-0.56755	-0.00029981	-0.21375	-0.00011292	528.2485295534058	18.501	0.49571	18.501	18.243	18.738	0					25	16	2	0	0	0	0.32638	1	1965	1965		4.897	2.5943	1	67460			2531	4177	1338	1338	3190	3190					-0.04185475256031168
ATFSSSHRY	9	Unmodified	_ATFSSSHRY_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF;ENST00000507867.5_1_4:83798919-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2486572265625	2	528.24888	1054.48321	0.23799	0.00012572	-0.56832	-0.00030021	-0.33032	-0.00017449	528.2486230453798	18.623	0.59453	18.505	18.242	18.837	-0.11739					32	20	3	0	0	0	0.30824	1	2015	2015		7.609	4.3276	1	68112			2532	4177	1338	1338	3191	3191					-0.04185475256031168
ATFSSSHRY	9	Unmodified	_ATFSSSHRY_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF;ENST00000507867.5_1_4:83798919-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2487182617188	2	528.24888	1054.48321	0.12813	6.7685E-05	-0.57361	-0.00030301	-0.44548	-0.00023532	528.2485513842231	18.606	0.47511	18.548	18.341	18.816	-0.058174					33	16	3	0	0	0	0.2869	1	1989	1989		10.8	6.8551	1	75951			2533	4177	1338	1338	3192	3192					-0.04185475256031168
ATFSSSHRYHK	11	Unmodified	_ATFSSSHRYHK_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF;ENST00000507867.5_1_4:83798919-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.8862609863281	3	440.886304	1319.63708	-0.18467	-8.1418E-05	-0.10446	-4.6056E-05	-0.28913	-0.00012747	440.8864360634821	13.712	0.57621	13.712	13.537	14.113	0					48	19	4	0	0	0	0.32466	1	499	499		14.838	0.66718	1	741460			2534	4177	1339	1339	3193	3193					-0.009950654905424017
ATFSSSHRYHK	11	Unmodified	_ATFSSSHRYHK_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF;ENST00000507867.5_1_4:83798919-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.8862609863281	3	440.886304	1319.63708	-0.27226	-0.00012003	-0.77846	-0.00034321	-1.0507	-0.00046325	440.8858455690722	13.843	0.69858	13.739	13.513	14.212	-0.10466					67	24	4	0	0	0	0.22132	2	531	531;578		29.291	17.66	1	716750			2535	4177	1339	1339	3194;3195	3194					-0.009950654905424017
ATFSSSHRYHK	11	Unmodified	_ATFSSSHRYHK_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF;ENST00000507867.5_1_4:83798919-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.8863525390625	3	440.886304	1319.63708	-0.20236	-8.9219E-05	-0.37369	-0.00016476	-0.57605	-0.00025397	440.8857722651163	13.83	0.60614	13.764	13.575	14.181	-0.066068					47	20	4	0	0	0	0.14667	2	534	534;590		35.996	21.158	1	919400			2536	4177	1339	1339	3196;3197	3196					-0.009950654905424017
ATFTGILGK	9	Unmodified	_ATFTGILGK_					0	0	0		ENST00000534553.5_1_11:61722629-61730618:+|nuORF;nc|ENSG00000167995|O76090-3|BEST1	ENST00000534553.5_1_11:61722629-61730618:+|nuORF;nc|ENSG00000167995|O76090-3|BEST1	nc|ENSG00000167995|O76090-3|BEST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2663879394531	2	454.26601	906.517468	0.44606	0.00020263	0.038553	1.7513E-05	0.48461	0.00022014	454.265999936157	46.915	0.93056	46.915	46.618	47.549	0					72	32	3	0	0	0	7.3453E-05	1	10631	10631		145.13	66.402	1	3195300			2537	11661;12825	1340	1340	3198	3198					0.06046972902856851
ATFTGILGK	9	Unmodified	_ATFTGILGK_					0	0	0		ENST00000534553.5_1_11:61722629-61730618:+|nuORF;nc|ENSG00000167995|O76090-3|BEST1	ENST00000534553.5_1_11:61722629-61730618:+|nuORF;nc|ENSG00000167995|O76090-3|BEST1	nc|ENSG00000167995|O76090-3|BEST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.26629638671875	2	454.26601	906.517468	0.27459	0.00012474	0.1403	6.3734E-05	0.41489	0.00018847	454.26607344488247	46.83	0.98863	46.883	46.527	47.515	0.052574					86	36	3	0	0	0	0.00012108	3	10613	10561;10613;10649		137.42	58.696	1	3443400			2538	11661;12825	1340	1340	3199;3200;3201	3200					0.06046972902856851
ATFTGILGK	9	Unmodified	_ATFTGILGK_					0	0	0		ENST00000534553.5_1_11:61722629-61730618:+|nuORF;nc|ENSG00000167995|O76090-3|BEST1	ENST00000534553.5_1_11:61722629-61730618:+|nuORF;nc|ENSG00000167995|O76090-3|BEST1	nc|ENSG00000167995|O76090-3|BEST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2663269042969	2	454.26601	906.517468	0.47354	0.00021511	-0.03671	-1.6676E-05	0.43683	0.00019844	454.26597353620537	46.878	0.78234	46.933	46.602	47.384	0.054375					67	27	3	0	0	0	9.2305E-05	2	10579	10579;10630		142.08	67.151	1	3328800			2539	11661;12825	1340	1340	3202;3203	3202					0.06046972902856851
ATFTNVFGK	9	Unmodified	_ATFTNVFGK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.7611389160156	2	492.761092	983.507631	0.58788	0.00028968	-0.26003	-0.00012813	0.32785	0.00016155	492.76094263842134	46.793	0.57082	46.793	46.566	47.137	0					35	19	2	0	0	0	0.07944	1	10625	10625		41.956	22.699	1	1029300			2540	3572	1341	1341	3204	3204					0.015217848974884873
ATFTNVFGK	9	Unmodified	_ATFTNVFGK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	492.761092	983.507631	0.55938	0.00027564	0.016502	8.1318E-06	0.57588	0.00028377	492.7609370360044	46.647	0.5148	46.7	46.44	46.955	0.052574	-0.038654	5.1034E-05	NaN	41.956	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	950610			2541	3572	1341	1341							0.015217848974884873
ATFTNVFGK	9	Unmodified	_ATFTNVFGK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	492.761092	983.507631	0.36794	0.0001813	0.024134	1.1892E-05	0.39207	0.0001932	492.76093989677616	46.668	0.62722	46.722	46.466	47.093	0.054371	-0.016123	5.8555E-05	NaN	41.956	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1249700			2542	3572	1341	1341							0.015217848974884873
ATFTVMGLK	9	Oxidation (M)	_ATFTVM(Oxidation (M))GLK_		ATFTVM(1)GLK		ATFTVM(89)GLK	0	0	1		ENST00000447566.5_1_22:41166840-41215302:-|nuORF;ENSG00000100372|ENST00000435456|SLC25A17	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.31610107421875	2	492.265153	982.515753	0.34869	0.00017165	0.41173	0.00020268	0.76042	0.00037433	492.26512824396815	43.183	0.53853	43.183	42.902	43.441	0					45	19	3	0	0	0	0.0090577	1	9481	9481		89.401	54.999	1	720230			2543	1583	1342	1342	3205	3205		195			0.02379595822594638
ATFTVMGLK	9	Oxidation (M)	_ATFTVM(Oxidation (M))GLK_		ATFTVM(1)GLK		ATFTVM(93)GLK	0	0	1		ENST00000447566.5_1_22:41166840-41215302:-|nuORF;ENSG00000100372|ENST00000435456|SLC25A17	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.3161315917969	2	492.265153	982.515753	0.3937	0.0001938	0.47212	0.00023241	0.86582	0.00042621	492.265177801456	42.936	0.62526	43.021	42.755	43.381	0.085197					49	22	3	0	0	0	0.0080395	1	9393	9393		92.653	67.662	1	890610			2544	1583	1342	1342	3206	3206		195			0.02379595822594638
ATFTVMGLK	9	Oxidation (M)	_ATFTVM(Oxidation (M))GLK_		ATFTVM(1)GLK		ATFTVM(58)GLK	0	0	1		ENST00000447566.5_1_22:41166840-41215302:-|nuORF;ENSG00000100372|ENST00000435456|SLC25A17	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.31597900390625	2	492.265153	982.515753	0.14164	6.9723E-05	0.45952	0.00022621	0.60116	0.00029593	492.2653660728625	42.885	0.64584	42.976	42.717	43.363	0.091362					50	23	3	0	0	0	0.067563	1	9378	9378		57.722	37.268	1	750500			2545	1583	1342	1342	3207	3207		195			0.02379595822594638
ATFYGPVKK	9	Unmodified	_ATFYGPVKK_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;CUL3|p.T583*|1|0.23|ENSG00000036257|chr2:224495927-224495928|-/TA|frameshift_variant;nc|ENSG00000036257|Q13618-3|CUL3;ENST00000487558.1_1_2:225360464-225362517:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3;ENST00000487558.1_1_2:225360464-225362517:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7873840332031	2	505.78711	1009.55967	0.26042	0.00013172	-0.075044	-3.7956E-05	0.18538	9.3761E-05	505.78687573014065	24.417	1.241	24.417	23.998	25.239	0					78	38	4	0	0	0	0.088443	1	3727	3727		39.95	10.868	1	544360			2546	577;11121	1343	1343	3208	3208					0.05526948311239721
ATFYGPVKK	9	Unmodified	_ATFYGPVKK_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;CUL3|p.T583*|1|0.23|ENSG00000036257|chr2:224495927-224495928|-/TA|frameshift_variant;nc|ENSG00000036257|Q13618-3|CUL3;ENST00000487558.1_1_2:225360464-225362517:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3;ENST00000487558.1_1_2:225360464-225362517:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7872619628906	2	505.78711	1009.55967	0.28978	0.00014657	0.016407	8.2987E-06	0.30619	0.00015487	505.7870618764374	24.539	1.0304	24.467	24.055	25.086	-0.072559					76	32	4	0	0	0	0.07944	2	3807	3765;3807		41.956	20.415	1	646280			2547	577;11121	1343	1343	3209;3210	3210					0.05526948311239721
ATFYGPVKK	9	Unmodified	_ATFYGPVKK_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;CUL3|p.T583*|1|0.23|ENSG00000036257|chr2:224495927-224495928|-/TA|frameshift_variant;nc|ENSG00000036257|Q13618-3|CUL3;ENST00000487558.1_1_2:225360464-225362517:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3;ENST00000487558.1_1_2:225360464-225362517:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.78717041015625	2	505.78711	1009.55967	0.12785	6.4667E-05	0.31634	0.00016	0.44419	0.00022467	505.78706471783767	24.534	0.98383	24.495	24.136	25.119	-0.038074					68	33	4	0	0	0	0.058995	2	3804	3761;3804		49.554	18.286	1	703070			2548	577;11121	1343	1343	3211;3212	3212					0.05526948311239721
ATFYTPEGLRH	11	Unmodified	_ATFYTPEGLRH_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.65087890625	3	431.219172	1290.63569	-0.014676	-6.3285E-06	-0.53086	-0.00022891	-0.54553	-0.00023524	431.21887537246727	40.281	1.1269	40.281	39.669	40.796	0					118	40	4	0	0	0	0.31874	1	8619	8619		24.229	17.192	1	2121100			2549	295	1344	1344	3213	3213					0.001993004207179183
ATFYTPEGLRH	11	Unmodified	_ATFYTPEGLRH_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.21905517578125	3	431.219172	1290.63569	0.0043912	1.8936E-06	-0.40629	-0.0001752	-0.4019	-0.00017331	431.2189695406843	39.977	1.019	40.076	39.622	40.641	0.099407					114	36	4	0	0	0	0.056067	2	8473	8421;8473		36.955	25.89	1	2212600			2550	295	1344	1344	3214;3215	3215					0.001993004207179183
ATGDMSGLLK	10	Oxidation (M)	_ATGDM(Oxidation (M))SGLLK_		ATGDM(1)SGLLK		ATGDM(140)SGLLK	0	0	1		ENSG00000127837|ENST00000248450|AAMP;ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF	ENSG00000127837|ENST00000248450|AAMP	ENSG00000127837|ENST00000248450|AAMP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7553405761719	2	504.755149	1007.49575	0.24986	0.00012612	-0.47292	-0.00023871	-0.22307	-0.00011259	504.755182672615	26.949	1.3397	26.949	26.614	27.954	0					131	46	5	0	0	0	2.0929E-05	3	4481	4481;4506;4548		143.91	85.23	1	5700000			2551	3337	1345	1345	3216;3217;3218	3216		424			-0.007701999079927191
ATGDMSGLLK	10	Oxidation (M)	_ATGDM(Oxidation (M))SGLLK_		ATGDM(1)SGLLK		ATGDM(170)SGLLK	0	0	1		ENSG00000127837|ENST00000248450|AAMP;ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF	ENSG00000127837|ENST00000248450|AAMP	ENSG00000127837|ENST00000248450|AAMP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.75543212890625	2	504.755149	1007.49575	0.22233	0.00011222	-0.208	-0.00010499	0.014337	7.2367E-06	504.75523679383525	26.952	1.4144	26.931	26.592	28.006	-0.021412					92	49	5	0	0	0	7.0748E-09	3	4515	4470;4515;4561		171.46	103.38	1	6110000			2552	3337	1345	1345	3219;3220;3221	3220		424			-0.007701999079927191
ATGDMSGLLK	10	Oxidation (M)	_ATGDM(Oxidation (M))SGLLK_		ATGDM(1)SGLLK		ATGDM(160)SGLLK	0	0	1		ENSG00000127837|ENST00000248450|AAMP;ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF	ENSG00000127837|ENST00000248450|AAMP	ENSG00000127837|ENST00000248450|AAMP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.75537109375	2	504.755149	1007.49575	0.36441	0.00018394	-0.14209	-7.1718E-05	0.22232	0.00011222	504.75526826920816	26.959	1.8063	26.948	26.144	27.95	-0.01156					122	63	5	0	0	0	1.3419E-08	3	4508	4462;4508;4552		163.69	105.01	1	6364700			2553	3337	1345	1345	3222;3223;3224	3223		424			-0.007701999079927191
ATGEHSHIR	9	Unmodified	_ATGEHSHIR_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2631530761719	2	504.254497	1006.49444	0.33397	0.00016841	-1.8616	-0.0009387	-1.5276	-0.00077029	504.2536906986778	29.21	0.4166	29.222	29.053	29.469	0.012266					22	14	2	0	0	0	0.20626	1	5188	5188		22.736	1.1993	1	61654	+		2554	17417	1346	1346	3225	3225					-0.008546531619117559
ATGIILPAR	9	Unmodified	_ATGIILPAR_					0	0	0		ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2872619628906	2	456.287277	910.560001	0.10524	4.8017E-05	-0.33673	-0.00015364	-0.23149	-0.00010563	456.28714553863756	41.11	0.5801	41.201	40.876	41.456	0.090252					37	21	2	0	0	0	0.063853	1	8842	8842		47.749	9.7747	1	982990			2555	5755	1347	1347	3226	3226					0.10114368031076992
ATGIILPAR	9	Unmodified	_ATGIILPAR_					0	0	0		ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.28704833984375	2	456.287277	910.560001	-0.027114	-1.2372E-05	-0.10266	-4.6843E-05	-0.12978	-5.9215E-05	456.2871582652206	41.062	0.5649	41.159	40.857	41.422	0.096622					51	20	3	0	0	0	0.063853	1	8841	8841		47.749	9.7747	1	902610			2556	5755	1347	1347	3227	3227					0.10114368031076992
ATGIILPAR	9	Unmodified	_ATGIILPAR_					0	0	0		ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	456.287277	910.560001	-0.07823	-3.5695E-05	-0.0055326	-2.5245E-06	-0.083763	-3.822E-05	456.2872450443512	41.187	0.62901	41.187	40.875	41.504	0	0.0046666	0.00011442	NaN	47.749	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	933280			2557	5755	1347	1347							0.10114368031076992
ATGLFLLEP	9	Unmodified	_ATGLFLLEP_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2	REV__nc|ENSG00000145147|O94813-3|SLIT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.79180908203125	2	480.773668	959.532783	0.14942	7.1836E-05	0.21568	0.00010369	0.36509	0.00017553	480.7735309102278	80.337	0.31094	80.402	80.264	80.575	0.065094					14	11	2	0	0	0	0.25622	1	20824	20824		7.2892	0	1	120960	+		2558	16279	1348	1348	3228	3228					0.05139839700052562
ATGLPGAPAA	10	Unmodified	_ATGLPGAPAA_					0	0	0		ENSG00000198108|ENST00000305031|CHSY3	ENSG00000198108|ENST00000305031|CHSY3	ENSG00000198108|ENST00000305031|CHSY3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2267150878906	2	413.226885	824.439217	-0.045396	-1.8759E-05	-0.055372	-2.2881E-05	-0.10077	-4.164E-05	413.2268284255644	14.326	1.6797	14.222	13.79	15.469	-0.10466					167	58	4	0	0	0	0.33817	1	851	851		14.838	0.93222	1	1827200			2559	8038	1349	1349	3229	3229					0.019975403176090367
ATGLSGLTK	9	Unmodified	_ATGLSGLTK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.26971435546875	2	424.247818	846.481082	-0.16023	-6.7977E-05	0.013976	5.9292E-06	-0.14625	-6.2048E-05	424.2478344873329	28.783	0.65438	28.778	28.519	29.174	-0.0042572					48	22	3	0	0	0	0.036702	1	5086	5086		71.708	16.205	1	639820			2560	6014	1350	1350	3230	3230					0.05170096006145286
ATGSVFTGK	9	Unmodified	_ATGSVFTGK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH;L3HYPDH|p.I341Lfs*2|1|0.33|ENSG00000126790|chr14:59473010-59473011|-/ATAAA|frameshift_variant	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.2320556640625	2	434.232168	866.449782	-0.31318	-0.00013599	-0.11136	-4.8355E-05	-0.42454	-0.00018435	434.2320430937913	22.688	1.5489	22.688	22.045	23.593	0					135	53	5	0	0	0	0.003673	2	3222	3222;3265		96.936	49.187	1	2027100			2561	3291	1351	1351	3231;3232	3231					0.01121522972061939
ATGSVFTGK	9	Unmodified	_ATGSVFTGK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH;L3HYPDH|p.I341Lfs*2|1|0.33|ENSG00000126790|chr14:59473010-59473011|-/ATAAA|frameshift_variant	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.2320861816406	2	434.232168	866.449782	-0.23525	-0.00010215	-0.28668	-0.00012449	-0.52193	-0.00022664	434.2320002795411	22.856	1.5725	22.768	22.379	23.951	-0.08761					90	55	2	0	0	0	0.00051734	2	3254	3254;3306		128.93	72.755	1	2204700			2562	3291	1351	1351	3233;3234	3233					0.01121522972061939
ATGSVFTGK	9	Unmodified	_ATGSVFTGK_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH;L3HYPDH|p.I341Lfs*2|1|0.33|ENSG00000126790|chr14:59473010-59473011|-/ATAAA|frameshift_variant	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.2321472167969	2	434.232168	866.449782	-0.19925	-8.6523E-05	-0.27592	-0.00011981	-0.47518	-0.00020634	434.2320142528727	22.819	1.2665	22.775	22.409	23.675	-0.044867					82	44	2	0	0	0	0.0023895	2	3260	3260;3318		107.1	50.923	1	2137200			2563	3291	1351	1351	3235;3236	3235					0.01121522972061939
ATGSWDSFLK	10	Unmodified	_ATGSWDSFLK_					0	0	0		nc|ENSG00000111664|P16520-2|GNB3;ENSG00000111664|ENST00000229264|GNB3;nc|ENSG00000172354|P62879-2|GNB2;ENSG00000172354|ENST00000303210|GNB2;ENSG00000078369|ENST00000378609|GNB1	nc|ENSG00000111664|P16520-2|GNB3	nc|ENSG00000111664|P16520-2|GNB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.759033203125	2	556.274564	1110.53457	0.33553	0.00018665	-0.46619	-0.00025933	-0.13066	-7.2682E-05	556.2742461571092	56.97	1.0509	57.049	56.73	57.781	0.078674					97	38	4	0	0	0	0.022191	2	13670	13670;13811		69.338	50.081	1	6670300			2564	2376	1352	1352	3237;3238	3237					-0.016271512820139833
ATGSWDSFLK	10	Unmodified	_ATGSWDSFLK_					0	0	0		nc|ENSG00000111664|P16520-2|GNB3;ENSG00000111664|ENST00000229264|GNB3;nc|ENSG00000172354|P62879-2|GNB2;ENSG00000172354|ENST00000303210|GNB2;ENSG00000078369|ENST00000378609|GNB1	nc|ENSG00000111664|P16520-2|GNB3	nc|ENSG00000111664|P16520-2|GNB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7589111328125	2	556.274564	1110.53457	0.11586	6.4448E-05	-0.13752	-7.6498E-05	-0.021663	-1.205E-05	556.2744008856316	57.335	0.87357	57.318	56.867	57.741	-0.0172					95	31	4	0	0	0	0.0027997	3	13820	13782;13820;13905		104.48	79.085	1	6912800			2565	2376	1352	1352	3239;3240;3241	3240					-0.016271512820139833
ATGSWDSFLK	10	Unmodified	_ATGSWDSFLK_					0	0	0		nc|ENSG00000111664|P16520-2|GNB3;ENSG00000111664|ENST00000229264|GNB3;nc|ENSG00000172354|P62879-2|GNB2;ENSG00000172354|ENST00000303210|GNB2;ENSG00000078369|ENST00000378609|GNB1	nc|ENSG00000111664|P16520-2|GNB3	nc|ENSG00000111664|P16520-2|GNB3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	556.274564	1110.53457	0.44416	0.00024707	-0.5972	-0.0003322	-0.15304	-8.513E-05	556.274142960998	57.115	1.0333	57.115	56.66	57.693	0	-0.045421	-0.00023505	NaN	104.48	103	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6604000			2566	2376	1352	1352							-0.016271512820139833
ATGSYVSGFLN	11	Unmodified	_ATGSYVSGFLN_					0	0	0		ENSG00000198283|ENST00000360374|OR5B21	ENSG00000198283|ENST00000360374|OR5B21	ENSG00000198283|ENST00000360374|OR5B21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2721557617188	2	558.272021	1114.52949	0.87888	0.00049066	-0.22482	-0.00012551	0.65407	0.00036515	558.271682981667	50.545	0.92717	50.59	50.213	51.141	0.044891					94	33	4	0	0	0	0.22988	1	11754	11754		38.615	10.986	1	1930800			2567	8059	1353	1353	3242	3242					-0.023194551446067635
ATGSYVSGFLN	11	Unmodified	_ATGSYVSGFLN_					0	0	0		ENSG00000198283|ENST00000360374|OR5B21	ENSG00000198283|ENST00000360374|OR5B21	ENSG00000198283|ENST00000360374|OR5B21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.272216796875	2	558.272021	1114.52949	0.79772	0.00044534	-0.37276	-0.0002081	0.42496	0.00023724	558.2717519652796	50.67	0.84559	50.691	50.335	51.181	0.020691					74	31	3	0	0	0	0.1175	1	11764	11764		38.615	10.12	1	2192900			2568	8059	1353	1353	3243	3243					-0.023194551446067635
ATHCVAMMTLF	11	Unmodified	_ATHCVAMMTLF_					0	0	0			REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5145263671875	3	408.857312	1223.55011	-0.97731	-0.00039958	1.9399	0.00079314	0.96258	0.00039356	408.8581488759016	34.91	0.50368	34.988	34.78	35.283	0.077381					30	17	2	0	0	0	0.329	1	6976	6976		2.6312	1.039	1	111850	+		2569	22977	1354	1354	3244	3244					-0.052726473524671746
ATHPLPEPL	9	Unmodified	_ATHPLPEPL_					0	0	0			REV__ENST00000298564.14_1_5:176084095-176084419:+|nuORF	REV__ENST00000298564.14_1_5:176084095-176084419:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.3029479980469	2	487.768917	973.523281	-0.72024	-0.00035131	-0.016934	-8.2599E-06	-0.73718	-0.00035957	487.76908232038085	35.055	0.58064	35.132	34.837	35.418	0.077377					40	20	3	0	0	0	0.24311	1	7051	7051		16.942	0	1	272640	+		2570	19808	1355	1355	3245	3245					0.035460714145074235
ATHWCWHLGR	10	Unmodified	_ATHWCWHLGR_					0	0	0			REV__ENST00000518928.1_1_8:143381726-143407541:-|nuORF	REV__ENST00000518928.1_1_8:143381726-143407541:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.24053955078125	3	422.86982	1265.58763	-0.27398	-0.00011586	1.8274	0.00077276	1.5534	0.00065691	422.87050858012486	25.875	0.4905	25.837	25.609	26.1	-0.038671					22	16	2	0	0	0	0.32137	1	4238	4238		1.7423	0.28716	1	163920	+		2571	21868	1356	1356	3246	3246					-0.034540519803385905
ATHWISQIRFR	11	Unmodified	_ATHWISQIRFR_					0	0	0			REV__ENSG00000154646|ENST00000284885|TMPRSS15	REV__ENSG00000154646|ENST00000284885|TMPRSS15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.5962829589844	3	472.261594	1413.76295	0.086422	4.0814E-05	-1.1679	-0.00055156	-1.0815	-0.00051075	472.595584277766	41.466	0.35926	41.557	41.299	41.658	0.090248					29	13	3	0	0	0	0.46971	1	8939	8939		2.084	0	1	2362500	+		2572	16672	1357	1357	3247	3247					0.0726206608553639
ATHWISQIRFR	11	Unmodified	_ATHWISQIRFR_					0	0	0			REV__ENSG00000154646|ENST00000284885|TMPRSS15	REV__ENSG00000154646|ENST00000284885|TMPRSS15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.59588623046875	3	472.261594	1413.76295	0.38072	0.0001798	-1.3102	-0.00061876	-0.92948	-0.00043896	472.260718108876	41.433	0.38784	41.53	41.233	41.621	0.096622					24	14	2	0	0	0	0.45629	1	8930	8930		3.8459	0	1	3674700	+		2573	16672	1357	1357	3248	3248					0.0726206608553639
ATHWISQIRFR	11	Unmodified	_ATHWISQIRFR_					0	0	0			REV__ENSG00000154646|ENST00000284885|TMPRSS15	REV__ENSG00000154646|ENST00000284885|TMPRSS15	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	472.261594	1413.76295	0.086422	4.0814E-05	-1.1679	-0.00055156	-1.0815	-0.00051075	472.595584277766	41.466	0.35926	41.557	41.299	41.658	0.090248	0.013395	8.9786E-05	NaN	3.8459	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2362500	+		2574	16672	1357	1357							0.0726206608553639
ATHWISQIRFR	11	Unmodified	_ATHWISQIRFR_					0	0	0			REV__ENSG00000154646|ENST00000284885|TMPRSS15	REV__ENSG00000154646|ENST00000284885|TMPRSS15	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	472.261594	1413.76295	0.38072	0.0001798	-1.3102	-0.00061876	-0.92948	-0.00043896	472.260718108876	41.433	0.38784	41.53	41.233	41.621	0.096622	-0.013395	-0.00011179	NaN	3.8459	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3674700	+		2575	16672	1357	1357							0.0726206608553639
ATHYPLDRCCY	11	Unmodified	_ATHYPLDRCCY_					0	0	0		ENSG00000235863|ENST00000451237|B3GALT4	ENSG00000235863|ENST00000451237|B3GALT4	ENSG00000235863|ENST00000451237|B3GALT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.77386474609375	3	447.862002	1340.56418	0.37911	0.00016979	-0.4561	-0.00020427	-0.076992	-3.4482E-05	447.861790959215	32.588	0.33428	32.643	32.37	32.704	0.055309					16	11	2	0	0	0	0.33303	1	6202	6202		2.4348	1.7371	1	160260			2576	8497	1358	1358	3249	3249					-0.09248278599807236
ATIAIIALSPK	11	Unmodified	_ATIAIIALSPK_					0	0	0		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-3|SLC3A1;SLC3A1|p.I238Kfs*26|1|0.31|ENSG00000138079|chr2:44281468-44281469|-/AAAATATACTGATTATTATA|frameshift_variant	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7404174804688	2	549.350074	1096.6856	0.32109	0.00017639	0.20915	0.00011489	0.53024	0.00029129	549.3501471784242	59.251	0.59251	59.251	58.968	59.56	0					48	20	3	0	0	0	0.0052397	1	14385	14385		105.35	50.097	1	625130			2577	4114	1359	1359	3250	3250					0.14112035096650288
ATIAIIALSPK	11	Unmodified	_ATIAIIALSPK_					0	0	0		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-3|SLC3A1;SLC3A1|p.I238Kfs*26|1|0.31|ENSG00000138079|chr2:44281468-44281469|-/AAAATATACTGATTATTATA|frameshift_variant	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7406616210938	2	549.350074	1096.6856	0.47593	0.00026145	0.036034	1.9795E-05	0.51196	0.00028125	549.3499882388568	59.158	0.53249	59.249	58.902	59.434	0.091305					47	18	3	0	0	0	0.20309	1	14320	14320		55.249	23.613	1	716040			2578	4114	1359	1359	3251	3251					0.14112035096650288
ATIAIIALSPK	11	Unmodified	_ATIAIIALSPK_					0	0	0		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-3|SLC3A1;SLC3A1|p.I238Kfs*26|1|0.31|ENSG00000138079|chr2:44281468-44281469|-/AAAATATACTGATTATTATA|frameshift_variant	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7406005859375	2	549.350074	1096.6856	0.57392	0.00031528	0.13906	7.6391E-05	0.71298	0.00039168	549.3500492446378	59.186	0.62587	59.172	58.889	59.515	-0.014267					48	21	3	0	0	0	0.0052397	1	14353	14353		105.35	50.097	1	749300			2579	4114	1359	1359	3252	3252					0.14112035096650288
ATIALMIQR	9	Oxidation (M)	_ATIALM(Oxidation (M))IQR_		ATIALM(1)IQR		ATIALM(110)IQR	0	0	1		nc|ENSG00000119969|Q9NRZ9-8|HELLS;nc|ENSG00000119969|Q9NRZ9-7|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	nc|ENSG00000119969|Q9NRZ9-8|HELLS	nc|ENSG00000119969|Q9NRZ9-8|HELLS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.323974609375	2	516.797152	1031.57975	0.32359	0.00016723	0.61382	0.00031722	0.93742	0.00048445	516.7973215567639	43.604	0.48986	43.604	43.388	43.878	0					41	17	3	0	0	0	0.0045335	1	9590	9590		106.94	44.367	1	758630			2580	2921	1360	1360	3253	3253		368			0.06522375979557182
ATIALMIQR	9	Oxidation (M)	_ATIALM(Oxidation (M))IQR_		ATIALM(1)IQR		ATIALM(73)IQR	0	0	1		nc|ENSG00000119969|Q9NRZ9-8|HELLS;nc|ENSG00000119969|Q9NRZ9-7|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	nc|ENSG00000119969|Q9NRZ9-8|HELLS	nc|ENSG00000119969|Q9NRZ9-8|HELLS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3241577148438	2	516.797152	1031.57975	0.3992	0.00020631	0.23917	0.0001236	0.63837	0.00032991	516.7970859737907	43.466	0.47099	43.544	43.319	43.79	0.077515					39	16	3	0	0	0	0.026033	1	9548	9548		72.968	31.128	1	699960			2581	2921	1360	1360	3254	3254		368			0.06522375979557182
ATIALMIQR	9	Oxidation (M)	_ATIALM(Oxidation (M))IQR_		ATIALM(1)IQR		ATIALM(89)IQR	0	0	1		nc|ENSG00000119969|Q9NRZ9-8|HELLS;nc|ENSG00000119969|Q9NRZ9-7|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS	nc|ENSG00000119969|Q9NRZ9-8|HELLS	nc|ENSG00000119969|Q9NRZ9-8|HELLS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.24365234375	2	516.797152	1031.57975	0.34012	0.00017577	0.18008	9.3064E-05	0.5202	0.00026884	516.7972288347937	43.433	0.46437	43.517	43.327	43.791	0.083996					40	16	4	0	0	0	0.0063009	1	9536	9536		89.401	24.166	1	764540			2582	2921	1360	1360	3255	3255		368			0.06522375979557182
ATIDGSVNPK	10	Unmodified	_ATIDGSVNPK_					0	0	0		ENSG00000116830|ENST00000369466|TTF2;ENST00000463696.1_1_1:117637951-117640053:+|nuORF;ENST00000492682.5_1_1:117635418-117640830:+|nuORF	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.26654052734375	2	501.266739	1000.51892	0.19278	9.6636E-05	-2.4523	-0.0012293	-2.2595	-0.0011326	501.2664320547575	23.652	1.0082	23.652	23.077	24.085	0					90	34	4	0	0	0	0.00094814	3	3523	3480;3523;3585		121.5	75.763	1	523470			2583	2756	1361	1361	3256;3257;3258	3257					0.01868562200957058
ATIDGSVNPK	10	Unmodified	_ATIDGSVNPK_					0	0	0		ENSG00000116830|ENST00000369466|TTF2;ENST00000463696.1_1_1:117637951-117640053:+|nuORF;ENST00000492682.5_1_1:117635418-117640830:+|nuORF	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.26611328125	2	501.266739	1000.51892	0.25551	0.00012808	-2.6134	-0.00131	-2.3579	-0.0011819	501.2663060282658	23.732	1.2348	23.66	23.092	24.327	-0.072559					104	42	4	0	0	0	0.0040945	3	3511	3511;3558;3598		96.936	58.76	1	562550			2584	2756	1361	1361	3259;3260;3261	3259					0.01868562200957058
ATIDGSVNPK	10	Unmodified	_ATIDGSVNPK_					0	0	0		ENSG00000116830|ENST00000369466|TTF2;ENST00000463696.1_1_1:117637951-117640053:+|nuORF;ENST00000492682.5_1_1:117635418-117640830:+|nuORF	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.26666259765625	2	501.266739	1000.51892	0.40527	0.00020315	-2.7407	-0.0013738	-2.3354	-0.0011707	501.26631873419126	23.786	1.0776	23.747	23.173	24.25	-0.038927					93	37	4	0	0	0	0.0039563	3	3553	3504;3553;3607		97.741	71.473	1	595470			2585	2756	1361	1361	3262;3263;3264	3263					0.01868562200957058
ATIDLLFTK	9	Unmodified	_ATIDLLFTK_					0	0	0		nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.3003234863281	2	511.30005	1020.58555	-0.14934	-7.6356E-05	0.73549	0.00037606	0.58616	0.0002997	511.3003992438132	61.766	0.71645	61.863	61.538	62.254	0.096985					55	25	3	0	0	0	0.21623	1	15237	15237		27.223	5.6863	1	454870			2586	4180	1362	1362	3265	3265					0.07607797762864266
ATIDLLFTK	9	Unmodified	_ATIDLLFTK_					0	0	0		nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	511.30005	1020.58555	0.22816	0.00011666	0.58655	0.0002999	0.81471	0.00041656	511.3003184874764	61.834	0.74786	61.834	61.569	62.316	0	-0.014277	-6.9241E-05	NaN	27.223	47	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	450790			2587	4180	1362	1362							0.07607797762864266
ATIDSQHGIEK	11	Unmodified	_ATIDSQHGIEK_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A;nc|ENSG00000110002|O00534-4|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.806396484375	2	599.806759	1197.59897	0.42839	0.00025695	-0.76144	-0.00045672	-0.33305	-0.00019977	600.3078442666315	20.043	0.41154	20.043	19.796	20.207	0					29	15	3	0	0	0	0.45826	1	2427	2427		3.5871	0.59182	1	168030			2588	2287	1363	1363	3266	3266					0.008070038041296357
ATIEEAYSR	9	Unmodified	_ATIEEAYSR_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2560424804688	2	520.256371	1038.49819	0.52729	0.00027433	-0.9645	-0.00050179	-0.43721	-0.00022746	520.2558283590098	28.986	0.76619	28.986	28.699	29.465	0					52	26	3	0	0	0	0.0031966	1	5146	5146		100.71	64.582	1	518630			2589	5280	1364	1364	3267	3267					-0.01952028178720866
ATIEEAYSR	9	Unmodified	_ATIEEAYSR_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2559204101562	2	520.256371	1038.49819	0.35335	0.00018383	-0.89992	-0.00046819	-0.54657	-0.00028435	520.2558134454664	28.938	0.59744	28.934	28.658	29.256	-0.0042572					45	20	3	0	0	0	0.0013864	1	5123	5123		117.84	77.88	1	558180			2590	5280	1364	1364	3268	3268					-0.01952028178720866
ATIEEAYSR	9	Unmodified	_ATIEEAYSR_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2557373046875	2	520.256371	1038.49819	0.21691	0.00011285	-0.9808	-0.00051027	-0.76389	-0.00039742	520.2558658992274	29.003	0.60084	29.017	28.728	29.329	0.013474					46	21	3	0	0	0	0.0023895	1	5136	5136		107.1	69.126	1	473560			2591	5280	1364	1364	3269	3269					-0.01952028178720866
ATIEVFLPPR	10	Unmodified	_ATIEVFLPPR_					0	0	0		NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant;nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant	NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7703857421875	2	571.832049	1141.64954	-0.031619	-1.8081E-05	-0.77245	-0.00044171	-0.80407	-0.00045979	571.831631375193	60.101	1.259	60.101	59.621	60.88	0					109	45	3	0	0	0	0.19117	1	14587	14587		45.74	28.627	1	1727200			2592	462	1365	1365	3270	3270					0.08438577919787349
ATIEVFLPPR	10	Unmodified	_ATIEVFLPPR_					0	0	0		NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant;nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant	NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.7698364257812	2	571.832049	1141.64954	-0.11854	-6.7783E-05	-0.69016	-0.00039466	-0.8087	-0.00046244	571.8316841154609	59.9	1.3437	59.995	59.55	60.894	0.095093					117	48	3	0	0	0	0.19117	1	14572	14572		53.404	25.775	1	1600000			2593	462	1365	1365	3271	3271					0.08438577919787349
ATIEVFLPPR	10	Unmodified	_ATIEVFLPPR_					0	0	0		NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant;nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1	NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant	NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7704467773438	2	571.832049	1141.64954	0.16037	9.1705E-05	-0.87509	-0.00050041	-0.71472	-0.0004087	571.8315392367854	60	1.2428	59.988	59.593	60.836	-0.011486					99	44	3	0	0	0	0.23216	1	14560	14560		41.956	23.809	1	1715400			2594	462	1365	1365	3272	3272					0.08438577919787349
ATIGVDFALK	10	Unmodified	_ATIGVDFALK_					0	0	0		RAB32|p.K210Sfs*2|1|0.6|ENSG00000118508|chr6:146554553-146554553|T/-|frameshift_variant;ENSG00000123892|ENST00000243662|RAB38;ENSG00000118508|ENST00000367495|RAB32	RAB32|p.K210Sfs*2|1|0.6|ENSG00000118508|chr6:146554553-146554553|T/-|frameshift_variant	RAB32|p.K210Sfs*2|1|0.6|ENSG00000118508|chr6:146554553-146554553|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7977905273438	2	517.797675	1033.5808	0.50803	0.00026305	-0.16747	-8.6715E-05	0.34056	0.00017634	517.7975017476635	57.242	1.2216	57.242	56.937	58.159	0					96	44	4	0	0	0	3.4983E-06	3	13818	13770;13818;13869		154.75	88.296	1	5020900			2595	2830	1366	1366	3273;3274;3275	3274					0.06534913620089355
ATIGVDFALK	10	Unmodified	_ATIGVDFALK_					0	0	0		RAB32|p.K210Sfs*2|1|0.6|ENSG00000118508|chr6:146554553-146554553|T/-|frameshift_variant;ENSG00000123892|ENST00000243662|RAB38;ENSG00000118508|ENST00000367495|RAB32	RAB32|p.K210Sfs*2|1|0.6|ENSG00000118508|chr6:146554553-146554553|T/-|frameshift_variant	RAB32|p.K210Sfs*2|1|0.6|ENSG00000118508|chr6:146554553-146554553|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7977905273438	2	517.797675	1033.5808	0.31557	0.0001634	-0.0033881	-1.7543E-06	0.31219	0.00016165	517.7975950388395	57.088	1.111	57.166	56.935	58.046	0.078674					88	40	4	0	0	0	3.4983E-06	2	13777	13730;13777		154.75	78.992	1	5234500			2596	2830	1366	1366	3276;3277	3277					0.06534913620089355
ATIGVDFALK	10	Unmodified	_ATIGVDFALK_					0	0	0		RAB32|p.K210Sfs*2|1|0.6|ENSG00000118508|chr6:146554553-146554553|T/-|frameshift_variant;ENSG00000123892|ENST00000243662|RAB38;ENSG00000118508|ENST00000367495|RAB32	RAB32|p.K210Sfs*2|1|0.6|ENSG00000118508|chr6:146554553-146554553|T/-|frameshift_variant	RAB32|p.K210Sfs*2|1|0.6|ENSG00000118508|chr6:146554553-146554553|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7978515625	2	517.797675	1033.5808	0.16473	8.5297E-05	0.087328	4.5218E-05	0.25206	0.00013052	517.7976588478629	57.247	1.0314	57.23	56.946	57.977	-0.0172					91	37	4	0	0	0	0.00094814	1	13817	13817		121.5	71.949	1	4212300			2597	2830	1366	1366	3278	3278					0.06534913620089355
ATIIDILEY	9	Unmodified	_ATIIDILEY_					0	0	0		ENSG00000196476|ENST00000360321|C20orf96	ENSG00000196476|ENST00000360321|C20orf96	ENSG00000196476|ENST00000360321|C20orf96	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7899780273438	2	525.789515	1049.56448	0.67246	0.00035357	0.37679	0.00019811	1.0492	0.00055168	525.7894733589939	87.595	0.46246	87.595	87.382	87.844	0					49	22	3	0	0	0	0.10197	2	23088	23088;23132		37.974	11.09	1	164630			2598	7870	1367	1367	3279;3280	3279					0.041677876633457345
ATIIDILEY	9	Unmodified	_ATIIDILEY_					0	0	0		ENSG00000196476|ENST00000360321|C20orf96	ENSG00000196476|ENST00000360321|C20orf96	ENSG00000196476|ENST00000360321|C20orf96	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7891235351562	2	525.789515	1049.56448	0.52633	0.00027674	0.43158	0.00022692	0.95791	0.00050366	525.7895722539756	87.458	0.50952	87.545	87.305	87.814	0.087097					54	25	3	0	0	0	0.051692	2	23037	23037;23105		52.268	12.311	1	272710			2599	7870	1367	1367	3281;3282	3281					0.041677876633457345
ATIIDILEY	9	Unmodified	_ATIIDILEY_					0	0	0		ENSG00000196476|ENST00000360321|C20orf96	ENSG00000196476|ENST00000360321|C20orf96	ENSG00000196476|ENST00000360321|C20orf96	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7903442382812	2	525.789515	1049.56448	0.61296	0.00032229	0.44317	0.00023301	1.0561	0.0005553	525.7896720926977	87.559	0.48286	87.554	87.382	87.865	-0.0056229					51	26	3	0	0	0	0.051692	2	23072	23072;23120		52.268	12.311	1	263950			2600	7870	1367	1367	3283;3284	3283					0.041677876633457345
ATIIDILTK	9	Unmodified	_ATIIDILTK_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.3083801269531	2	494.307875	986.601197	0.52255	0.0002583	-0.22463	-0.00011103	0.29793	0.00014727	494.3079534134883	65.557	1.5601	65.557	65.128	66.688	0					177	55	5	0	0	0	2.0102E-16	5	16373	16322;16373;16421;16469;16529		203.64	100.46	1	18360000			2601	3839	1368	1368	3285;3286;3287;3288;3289	3286					0.10736084279903935
ATIIDILTK	9	Unmodified	_ATIIDILTK_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.3081970214844	2	494.307875	986.601197	0.20315	0.00010042	0.11947	5.9053E-05	0.32262	0.00015947	494.30810940746096	65.473	1.4722	65.561	65.164	66.636	0.088882					179	53	5	0	0	0	4.1496E-11	5	16360	16269;16317;16360;16410;16462		189.73	104.46	1	17979000			2602	3839	1368	1368	3290;3291;3292;3293;3294	3292					0.10736084279903935
ATIIDILTK	9	Unmodified	_ATIIDILTK_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.30828857421875	2	494.307875	986.601197	0.44719	0.00022105	-0.11118	-5.4956E-05	0.33601	0.00016609	494.3079972458314	65.54	1.5917	65.529	65.175	66.767	-0.011337					182	57	5	0	0	0	4.1496E-11	5	16349	16303;16349;16392;16442;16496		189.73	97.699	1	17702000			2603	3839	1368	1368	3295;3296;3297;3298;3299	3296					0.10736084279903935
ATIIDILTKR	10	Unmodified	_ATIIDILTKR_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3577880859375	2	572.358431	1142.70231	0.13422	7.6822E-05	-0.66436	-0.00038025	-0.53014	-0.00030343	572.3579976265268	59.285	0.50883	59.285	59.081	59.59	0					38	17	3	0	0	0	0.0071242	1	14423	14423		85.764	54.496	1	345160			2604	3839	1369	1369	3300	3300					0.13666535982611094
ATIIDILTKR	10	Unmodified	_ATIIDILTKR_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000468639.5_1_9:75766818-75774345:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.8598022460938	2	572.358431	1142.70231	0.38893	0.00022261	-0.82245	-0.00047073	-0.43351	-0.00024813	572.357777384974	59.291	0.43103	59.277	59.084	59.515	-0.014267					35	14	3	0	0	0	0.015119	1	14415	14415		77.049	50.78	1	471010			2605	3839	1369	1369	3301	3301					0.13666535982611094
ATIKALVSR	9	Unmodified	_ATIKALVSR_					0	0	0		nc|ENSG00000050628|P43115-12|PTGER3;nc|ENSG00000050628|P43115-7|PTGER3;nc|ENSG00000050628|P43115-6|PTGER3;nc|ENSG00000050628|P43115-11|PTGER3;nc|ENSG00000050628|P43115-5|PTGER3;nc|ENSG00000050628|P43115-9|PTGER3;nc|ENSG00000050628|P43115-8|PTGER3;ENSG00000050628|ENST00000306666|PTGER3;nc|ENSG00000050628|P43115-2|PTGER3;nc|ENSG00000050628|P43115-4|PTGER3;nc|ENSG00000050628|P43115-3|PTGER3;nc|ENSG00000050628|P43115-10|PTGER3	nc|ENSG00000050628|P43115-12|PTGER3	nc|ENSG00000050628|P43115-12|PTGER3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.80572509765625	2	479.805834	957.597115	-0.023377	-1.1217E-05	-0.052776	-2.5322E-05	-0.076153	-3.6539E-05	479.8057320571935	28.175	0.41953	28.171	27.94	28.359	-0.0042572					32	14	3	0	0	0	0.23374	1	4884	4884		18.721	9.3381	1	234740			2606	12573	1370	1370	3302	3302					0.11662039576845018
ATIKALVSR	9	Unmodified	_ATIKALVSR_					0	0	0		nc|ENSG00000050628|P43115-12|PTGER3;nc|ENSG00000050628|P43115-7|PTGER3;nc|ENSG00000050628|P43115-6|PTGER3;nc|ENSG00000050628|P43115-11|PTGER3;nc|ENSG00000050628|P43115-5|PTGER3;nc|ENSG00000050628|P43115-9|PTGER3;nc|ENSG00000050628|P43115-8|PTGER3;ENSG00000050628|ENST00000306666|PTGER3;nc|ENSG00000050628|P43115-2|PTGER3;nc|ENSG00000050628|P43115-4|PTGER3;nc|ENSG00000050628|P43115-3|PTGER3;nc|ENSG00000050628|P43115-10|PTGER3	nc|ENSG00000050628|P43115-12|PTGER3	nc|ENSG00000050628|P43115-12|PTGER3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	479.805834	957.597115	-0.17354	-8.3267E-05	0.038552	1.8497E-05	-0.13499	-6.4769E-05	479.8058186355093	28.205	0.43692	28.205	27.981	28.418	0	0.022424	3.1026E-05	NaN	18.721	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226320			2607	12573	1370	1370							0.11662039576845018
ATIKQLEQR	9	Unmodified	_ATIKQLEQR_					0	0	0		nc|ENSG00000018189|Q7L099-2|RUFY3;nc|ENSG00000018189|Q7L099-4|RUFY3;ENSG00000018189|ENST00000381006|RUFY3	nc|ENSG00000018189|Q7L099-2|RUFY3	nc|ENSG00000018189|Q7L099-2|RUFY3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.8167724609375	2	543.81693	1085.61931	0.24909	0.00013546	-3.4563	-0.0018796	-3.2072	-0.0017441	544.3153354598413	23.152	0.45426	23.152	22.936	23.39	0					28	15	3	0	0	0	0.25527	1	3400	3400		8.7454	2.5396	1	59575			2608	491	1371	1371	3303	3303					0.07992219254606425
ATIKQLEQR	9	Unmodified	_ATIKQLEQR_					0	0	0		nc|ENSG00000018189|Q7L099-2|RUFY3;nc|ENSG00000018189|Q7L099-4|RUFY3;ENSG00000018189|ENST00000381006|RUFY3	nc|ENSG00000018189|Q7L099-2|RUFY3	nc|ENSG00000018189|Q7L099-2|RUFY3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	543.81693	1085.61931	0.40023	0.00021765	-3.09	-0.0016804	-2.6897	-0.0014627	543.8168843001821	23.288	0.49233	23.201	22.967	23.459	-0.08761	-0.0027111	0.00056624	NaN	8.7454	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68092			2609	491	1371	1371							0.07992219254606425
ATIKQLEQR	9	Unmodified	_ATIKQLEQR_					0	0	0		nc|ENSG00000018189|Q7L099-2|RUFY3;nc|ENSG00000018189|Q7L099-4|RUFY3;ENSG00000018189|ENST00000381006|RUFY3	nc|ENSG00000018189|Q7L099-2|RUFY3	nc|ENSG00000018189|Q7L099-2|RUFY3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.81693	1085.61931	0.56457	0.00030702	-4.2957	-0.0023361	-3.7312	-0.0020291	543.8166951276994	23.302	0.46671	23.258	22.977	23.444	-0.044867	0.054357	-0.00074518	NaN	8.7454	37	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58410			2610	491	1371	1371							0.07992219254606425
ATILAGDIKVK	11	Unmodified	_ATILAGDIKVK_					0	0	0		ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.2975463867188	2	564.852981	1127.69141	-0.11199	-6.3255E-05	-0.008567	-4.8391E-06	-0.12055	-6.8095E-05	564.8527295619956	39.022	0.45155	39.022	38.816	39.268	0					25	15	2	0	0	0	0.23084	1	8200	8200		48.073	26.483	1	458470			2611	6467	1372	1372	3304	3304					0.13267133608314907
ATILAGDIKVK	11	Unmodified	_ATILAGDIKVK_					0	0	0		ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.234375	2	564.852981	1127.69141	0.25766	0.00014554	-0.4213	-0.00023797	-0.16364	-9.2432E-05	564.8526379698786	38.974	0.49778	39.066	38.862	39.36	0.09267					26	17	2	0	0	0	0.082455	1	8181	8181		79.427	45.025	1	325010			2612	6467	1372	1372	3305	3305					0.13267133608314907
ATILAGDIKVK	11	Unmodified	_ATILAGDIKVK_					0	0	0		ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.297607421875	2	564.852981	1127.69141	0.43737	0.00024705	-0.65981	-0.0003727	-0.22244	-0.00012565	564.8523668976246	38.941	0.40138	39.041	38.81	39.212	0.099403					21	13	2	0	0	0	0.27286	1	8179	8179		36.395	18.952	1	276150			2613	6467	1372	1372	3306	3306					0.13267133608314907
ATILAGDVKVK	11	Unmodified	_ATILAGDVKVK_					0	0	0		ENSG00000168264|ENST00000366609|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2;ENSG00000119669|ENST00000238647|IRF2BPL	ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8456420898438	2	557.845156	1113.67576	0.54187	0.00030228	0.20248	0.00011295	0.74435	0.00041523	557.8451933537397	34.066	0.68897	34.066	33.839	34.528	0					62	24	4	0	0	0	8.5601E-06	2	6665	6665;6715		125.66	83.701	1	1360500			2614	6260	1373	1373	3307;3308	3307					0.12346847091271229
ATILAGDVKVK	11	Unmodified	_ATILAGDVKVK_					0	0	0		ENSG00000168264|ENST00000366609|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2;ENSG00000119669|ENST00000238647|IRF2BPL	ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.845458984375	2	557.845156	1113.67576	0.71959	0.00040142	-0.049086	-2.7383E-05	0.6705	0.00037403	557.8450758914005	33.982	0.75362	34.048	33.786	34.54	0.06636					71	26	4	0	0	0	1.3273E-08	3	6672	6623;6672;6727		139.32	97.366	1	1380500			2615	6260	1373	1373	3309;3310;3311	3310					0.12346847091271229
ATILAGDVKVK	11	Unmodified	_ATILAGDVKVK_					0	0	0		ENSG00000168264|ENST00000366609|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2;ENSG00000119669|ENST00000238647|IRF2BPL	ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.8457641601562	2	557.845156	1113.67576	0.12335	6.8813E-05	0.47725	0.00026623	0.60061	0.00033504	557.8453477735902	33.927	0.80387	33.993	33.799	34.603	0.066704					68	28	4	0	0	0	8.5601E-06	3	6614	6614;6658;6715		125.66	83.701	1	1341300			2616	6260	1373	1373	3312;3313;3314	3312					0.12346847091271229
ATILRELEV	9	Unmodified	_ATILRELEV_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7525634765625	2	522.308406	1042.60226	0.45772	0.00023907	-0.12837	-6.7047E-05	0.32936	0.00017203	522.3081751037436	56.855	0.44689	56.933	56.756	57.203	0.078674					25	16	2	0	0	0	0.20521	1	13666	13666		24.882	8.7325	1	261840			2617	5228	1374	1374	3315	3315					0.08266298648823067
ATIMGVRFK	9	Oxidation (M)	_ATIM(Oxidation (M))GVRFK_		ATIM(1)GVRFK		ATIM(89)GVRFK	0	0	1		ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7919311523438	2	519.791869	1037.56919	0.36459	0.00018951	-0.14449	-7.5104E-05	0.2201	0.00011441	519.791783412112	30.812	0.7851	30.812	30.473	31.258	0					86	27	4	0	0	0	0.0046246	2	5644	5644;5691		89.401	37.771	1	2424600			2618	1464	1375	1375	3316;3317	3316		180			0.05190393325119658
ATIMGVRFK	9	Oxidation (M)	_ATIM(Oxidation (M))GVRFK_		ATIM(1)GVRFK		ATIM(80)GVRFK	0	0	1		ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7919311523438	2	519.791869	1037.56919	0.24708	0.00012843	-0.014265	-7.4148E-06	0.23281	0.00012102	519.7918332780795	30.82	0.72583	30.848	30.496	31.222	0.027946					83	25	4	0	0	0	0.0098873	1	5641	5641		79.596	43.09	1	2506500			2619	1464	1375	1375	3318	3318		180			0.05190393325119658
ATIMGVRFK	9	Oxidation (M)	_ATIM(Oxidation (M))GVRFK_		ATIM(1)GVRFK		ATIM(80)GVRFK	0	0	1		ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7919311523438	2	519.791869	1037.56919	0.18888	9.8181E-05	0.038318	1.9917E-05	0.2272	0.0001181	519.7918601021929	30.796	0.68643	30.823	30.505	31.192	0.027157					79	24	4	0	0	0	0.0098873	1	5638	5638		79.596	21.874	1	2625100			2620	1464	1375	1375	3319	3319		180			0.05190393325119658
ATINIKAP	8	Unmodified	_ATINIKAP_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.86114501953125	2	414.252903	826.491253	-0.070214	-2.9086E-05	0.21648	8.9676E-05	0.14626	6.0589E-05	414.2530450482793	25.005	0.42019	25.005	24.762	25.182	0					22	14	2	0	0	0	0.34092	1	3926	3926		13.508	1.8676	1	59248	+		2621	15815	1376	1376	3320	3320					0.07106703731369635
ATINIKAP	8	Unmodified	_ATINIKAP_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	414.252903	826.491253	0.16324	6.7621E-05	0.13038	5.401E-05	0.29361	0.00012163	414.2529129449084	24.967	0.38023	24.911	24.78	25.16	-0.055931	-0.048205	4.773E-05	NaN	13.508	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63655	+		2622	15815	1376	1376							0.07106703731369635
ATIQGAYAR	9	Unmodified	_ATIQGAYAR_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000508276.1_1_4:2933242-2933551:-|nuORF;ENST00000514031.5_1_4:2932567-2933551:-|nuORF	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.75653076171875	2	475.756341	949.498129	0.065907	3.1356E-05	-0.10466	-4.9792E-05	-0.038751	-1.8436E-05	475.7564254052871	24.263	1.6456	24.263	23.917	25.562	0					129	56	4	0	0	0	2.5511E-05	4	3689	3643;3689;3734;3782		152.89	90.313	1	4813900			2623	2268	1377	1377	3321;3322;3323;3324	3322					0.021360166119393398
ATIQGAYAR	9	Unmodified	_ATIQGAYAR_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000508276.1_1_4:2933242-2933551:-|nuORF;ENST00000514031.5_1_4:2932567-2933551:-|nuORF	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.75640869140625	2	475.756341	949.498129	0.26257	0.00012492	-0.24495	-0.00011654	0.017614	8.3801E-06	475.7563484351085	24.467	1.3314	24.394	23.966	25.298	-0.072559					120	45	4	0	0	0	2.5511E-05	5	3788	3699;3747;3788;3834;3883		152.89	90.313	1	4920900			2624	2268	1377	1377	3325;3326;3327;3328;3329	3327					0.021360166119393398
ATIQGAYAR	9	Unmodified	_ATIQGAYAR_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000508276.1_1_4:2933242-2933551:-|nuORF;ENST00000514031.5_1_4:2932567-2933551:-|nuORF	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.75653076171875	2	475.756341	949.498129	0.11378	5.4132E-05	-0.079542	-3.7842E-05	0.03424	1.629E-05	475.75642050184956	24.394	1.4584	24.355	24.049	25.508	-0.038927					134	50	5	0	0	0	2.5511E-05	4	3735	3688;3735;3777;3831		152.89	90.313	1	5126300			2625	2268	1377	1377	3330;3331;3332;3333	3331					0.021360166119393398
ATIQNETPK	9	Unmodified	_ATIQNETPK_					0	0	0		ENST00000535919.1_1_11:95512769-95516347:-|nuORF;nc|ENSG00000077458|Q5HYJ3-3|FAM76B;nc|ENSG00000077458|Q5HYJ3-2|FAM76B;ENSG00000077458|ENST00000358780|FAM76B	ENST00000535919.1_1_11:95512769-95516347:-|nuORF	ENST00000535919.1_1_11:95512769-95516347:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.26666259765625	2	501.266739	1000.51892	0.16638	8.34E-05	-0.20008	-0.00010029	-0.033697	-1.6891E-05	501.26661158233236	19.058	1.3817	18.941	17.957	19.339	-0.11739					85	48	3	0	0	0	0.17555	1	2185	2185		27.223	11.975	1	277350			2626	1090	1378	1378	3334	3334					0.018685622009456893
ATIQNETPK	9	Unmodified	_ATIQNETPK_					0	0	0		ENST00000535919.1_1_11:95512769-95516347:-|nuORF;nc|ENSG00000077458|Q5HYJ3-3|FAM76B;nc|ENSG00000077458|Q5HYJ3-2|FAM76B;ENSG00000077458|ENST00000358780|FAM76B	ENST00000535919.1_1_11:95512769-95516347:-|nuORF	ENST00000535919.1_1_11:95512769-95516347:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2666931152344	2	501.266739	1000.51892	0.053029	2.6581E-05	-0.096135	-4.8189E-05	-0.043106	-2.1608E-05	501.2666569064577	18.835	1.0535	18.777	18.313	19.366	-0.058174					72	36	3	0	0	0	0.027957	2	2129	2114;2129		61.09	32.784	1	243370			2627	1090	1378	1378	3335;3336	3336					0.018685622009456893
ATIRVLEAIQK	11	Unmodified	_ATIRVLEAIQK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5906982421875	3	414.590717	1240.75032	-0.091588	-3.7971E-05	0.24751	0.00010262	0.15592	6.4645E-05	414.59077396405246	43.911	0.57571	43.911	43.656	44.232	0					65	20	4	0	0	0	0.00055166	2	9667	9667;9718		103.13	79.163	1	2206200			2628	6352	1379	1379	3337;3338	3337					0.13957609902649892
ATIRVLEAIQK	11	Unmodified	_ATIRVLEAIQK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.8380432128906	3	414.590717	1240.75032	0.30941	0.00012828	-0.38262	-0.00015863	-0.073211	-3.0353E-05	414.5905603071895	43.741	0.69066	43.818	43.567	44.258	0.077515					74	25	4	0	0	0	0.27108	1	9606	9606		35.734	30.211	1	2241500			2629	6352	1379	1379	3339	3339					0.13957609902649892
ATIRVLEAIQK	11	Unmodified	_ATIRVLEAIQK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.2520751953125	2	621.382437	1240.75032	0.10391	6.457E-05	-0.24959	-0.00015509	-0.14568	-9.0523E-05	621.3821349554239	43.762	0.52914	43.84	43.599	44.128	0.077518					45	19	3	0	0	0	0.27554	1	9615	9615		39.923	14.932	1	872730			2630	6352	1379	1379	3340	3340					0.13957609902649892
ATIRVLEAIQK	11	Unmodified	_ATIRVLEAIQK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.50372314453125	3	414.590717	1240.75032	0.28674	0.00011888	-0.38511	-0.00015966	-0.098364	-4.0781E-05	414.59056081336865	43.723	0.6888	43.807	43.549	44.238	0.083996					71	25	4	0	0	0	0.32584	1	9658	9658		11.999	9.0727	1	2234600			2631	6352	1379	1379	3341	3341					0.13957609902649892
ATIRVLESVQK	11	Unmodified	_ATIRVLESVQK_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3719482421875	2	622.372069	1242.72959	0.41262	0.0002568	-0.47725	-0.00029703	-0.06463	-4.0224E-05	622.3719275202428	36.131	0.3502	36.131	35.932	36.282	0					25	12	3	0	0	0	0.18503	1	7319	7319		38.559	15.823	1	359620			2632	3324	1380	1380	3342	3342					0.11793019522997383
ATIRVLESVQK	11	Unmodified	_ATIRVLESVQK_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.2501220703125	3	415.250472	1242.72959	0.077504	3.2183E-05	-0.72177	-0.00029971	-0.64426	-0.00026753	415.2501197541892	36.075	0.65536	36.075	35.856	36.511	0					51	23	3	0	0	0	0.20706	1	7339	7339		30.572	13.734	1	894980			2633	3324	1380	1380	3343	3343					0.11793019522997383
ATIRVLESVQK	11	Unmodified	_ATIRVLESVQK_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.2502136230469	3	415.250472	1242.72959	0.40294	0.00016732	-0.94709	-0.00039328	-0.54415	-0.00022596	415.2500541194346	36	0.74643	36.083	35.651	36.398	0.082355					53	26	3	0	0	0	0.38182	1	7307	7307		13.622	3.4712	1	1032100			2634	3324	1380	1380	3344	3344					0.11793019522997383
ATIRVLESVQK	11	Unmodified	_ATIRVLESVQK_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	622.372069	1242.72959	0.20733	0.00012904	-0.012384	-7.7073E-06	0.19494	0.00012133	622.3719606126522	35.93	0.35305	36.013	35.849	36.202	0.082359	-0.047558	0.00032342	NaN	38.559	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327960			2635	3324	1380	1380							0.11793019522997383
ATIRVLESVQK	11	Unmodified	_ATIRVLESVQK_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	622.372069	1242.72959	0.38825	0.00024164	-0.29007	-0.00018053	0.098183	6.1106E-05	622.3718500949316	35.951	0.42799	36.037	35.844	36.272	0.08625	-0.02314	-2.2231E-05	NaN	38.559	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337400			2636	3324	1380	1380							0.11793019522997383
ATISRPQQ	8	Unmodified	_ATISRPQQ_					0	0	0		ENST00000608004.1_1_19:58817468-58823414:+|nuORF	ENST00000608004.1_1_19:58817468-58823414:+|nuORF	ENST00000608004.1_1_19:58817468-58823414:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7609558105469	2	450.748516	899.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.386	1	23.298	22.798	23.798	-0.087608								0	0	0	0.34229	1	3435	3435		18.135	4.2289	1				2637	12315	1381	1381	3345	3345					0.028717300948983393
ATISSPLEL	9	Unmodified	_ATISSPLEL_					0	0	0		ENSG00000196544|ENST00000389017|BORCS6	ENSG00000196544|ENST00000389017|BORCS6	ENSG00000196544|ENST00000389017|BORCS6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.76068115234375	2	465.760758	929.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.048	1	66.048	65.548	66.548	0								0	0	0	0.19013	1	16510	16510		25.399	2.2509	1				2638	7877	1382	1382	3346	3346					0.039389454577644756
ATITDKELLKK	11	Unmodified	_ATITDKELLKK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.92437744140625	3	420.590494	1258.74965	-0.21293	-8.9558E-05	-0.82407	-0.00034659	-1.037	-0.00043615	420.59001507099026	25.921	0.69664	25.921	25.683	26.379	0					62	24	4	0	0	0	0.026852	2	4213	4167;4213		59.935	28.473	1	722500			2639	3572	1383	1383	3347;3348	3348					0.13062770462920525
ATITDKELLKK	11	Unmodified	_ATITDKELLKK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.5898132324219	3	420.590494	1258.74965	-0.17439	-7.3346E-05	-0.88781	-0.0003734	-1.0622	-0.00044675	420.58997608653675	25.939	0.53867	25.901	25.668	26.206	-0.038671					51	18	4	0	0	0	0.033944	2	4230	4180;4230		57.885	33.921	1	742170			2640	3572	1383	1383	3349;3350	3350					0.13062770462920525
ATITDKELLKK	11	Unmodified	_ATITDKELLKK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.5900573730469	3	420.590494	1258.74965	-0.032459	-1.3652E-05	-0.74039	-0.0003114	-0.77285	-0.00032505	420.5899630700323	25.952	0.89684	25.93	25.659	26.556	-0.022238					83	31	4	0	0	0	0.058973	2	4224	4177;4224		50.648	31.504	1	700130			2641	3572	1383	1383	3351;3352	3352					0.13062770462920525
ATITLELLG	9	Unmodified	_ATITLELLG_					0	0	0			REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.23681640625	2	465.778951	929.543348	-0.12677	-5.9048E-05	-1.5335	-0.00071427	-1.6603	-0.00077332	465.77756669530703	19.652	0.71853	19.652	19.267	19.986	0					56	25	3	0	0	0	0.25066	1	2399	2399		11.64	0.81637	1	87680	+		2642	13683	1384	1384	3353	3353					0.07575822354465345
ATIYSLFYTAI	11	Unmodified	_ATIYSLFYTAI_					0	0	0		nc|ENSG00000165269|O14520-2|AQP7;ENST00000412626.2_1_9:67272267-67281749:-|nuORF;nc|ENSG00000279688|A6NL99|AQP7P3;ENSG00000165269|ENST00000297988|AQP7;ENSG00000259916|ENST00000561882|AQP7B	nc|ENSG00000165269|O14520-2|AQP7	nc|ENSG00000165269|O14520-2|AQP7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.9349060058594	3	421.560423	1261.65944	-0.044787	-1.8881E-05	-0.64523	-0.000272	-0.69002	-0.00029088	421.56014578002413	31.755	0.56097	31.755	31.61	32.171	0					28	19	2	0	0	0	0.32909	1	6031	6031		4.7159	2.8095	1	341680			2643	5942	1385	1385	3354	3354					0.03907721134532949
ATKAEGFYQK	10	Unmodified	_ATKAEGFYQK_					0	0	0		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.79541015625	2	571.795663	1141.57677	0.071161	4.069E-05	-0.62792	-0.00035904	-0.55676	-0.00031835	571.7951080372294	18.601	0.28468	18.601	18.505	18.79	0					12	9	2	0	0	0	0.37007	1	1998	1998		8.9762	4.0792	1	46237			2644	6135	1386	1386	3355	3355					0.011648241263856107
ATKASPGPP	9	Unmodified	_ATKASPGPP_					0	0	0		ENST00000552728.5_1_16:708591-715679:+|nuORF	ENST00000552728.5_1_16:708591-715679:+|nuORF	ENST00000552728.5_1_16:708591-715679:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2267150878906	2	413.226885	824.439217	-0.34575	-0.00014287	0.23262	9.6124E-05	-0.11313	-4.6747E-05	413.22693508593534	14.259	1.5973	14.259	13.847	15.445	0					160	55	4	0	0	0	0.22935	2	691	648;691		19.362	1.4022	1	1678900			2645	11812	1387	1387	3356;3357	3357					0.019975403176204054
ATKDMKPQVS	10	Unmodified	_ATKDMKPQVS_					0	0	0		ENST00000539966.5_1_13:99104953-99105142:-|nuORF	ENST00000539966.5_1_13:99104953-99105142:-|nuORF	ENST00000539966.5_1_13:99104953-99105142:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7896118164062	2	552.789524	1103.56449	-0.058341	-3.225E-05	-0.065031	-3.5949E-05	-0.12337	-6.8199E-05	552.7894992307506	13.34	0.41733	13.272	13.102	13.519	-0.067495					21	14	2	0	0	0	0.32101	1	395	395		2.4985	1.0166	1	109530			2646	11713	1388	1388	3358	3358					0.016854643916758505
ATKEARRRAVA	11	Unmodified	_ATKEARRRAVA_					0	0	0		ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA	ENSG00000248098|ENST00000269980|BCKDHA	ENSG00000248098|ENST00000269980|BCKDHA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.24737548828125	3	410.245944	1227.716	0.11882	4.8747E-05	3.1036	0.0012733	3.2225	0.001322	410.2455804450986	22.079	1.0693	21.979	21.214	22.284	-0.10034					79	38	5	0	0	0	0.36722	1	3037	3037		15.538	4.6395	1	151680			2647	8578	1389	1389	3359	3359					0.11125206534416066
ATKEKLGPK	9	Unmodified	_ATKEKLGPK_					0	0	0			REV__ENST00000171111.9_2_19:10597191-10597353:-|nuORF	REV__ENST00000171111.9_2_19:10597191-10597353:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2855224609375	2	486.297842	970.581131	0.65995	0.00032093	-0.16379	-7.9649E-05	0.49617	0.00024129	486.2977555354769	33.544	0.88044	33.61	33.323	34.203	0.06636					104	31	5	0	0	0	0.18208	1	6688	6688		26.268	5.8145	1	7648100	+		2648	19385	1390	1390	3360	3360					0.09466333339958055
ATKESDGFHR	10	Unmodified	_ATKESDGFHR_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.2778930664062	2	574.278169	1146.54179	-0.11122	-6.3872E-05	-0.16257	-9.3358E-05	-0.27379	-0.00015723	574.2780571460005	13.173	0.45284	13.173	13.031	13.484	0					41	15	4	0	0	0	0.024627	1	345	345		66.683	42.893	1	269190			2649	5048	1391	1391	3361	3361					-0.025624186815548455
ATKESDGFHR	10	Unmodified	_ATKESDGFHR_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2779541015625	2	574.278169	1146.54179	0.0059036	3.3903E-06	-0.13197	-7.5788E-05	-0.12607	-7.2398E-05	574.2780211546968	13.257	0.45028	13.157	13.042	13.492	-0.099291					36	15	4	0	0	0	0.013686	1	376	376		78.61	57.073	1	291170			2650	5048	1391	1391	3362	3362					-0.025624186815548455
ATKESDGFHR	10	Unmodified	_ATKESDGFHR_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.27783203125	2	574.278169	1146.54179	-0.16029	-9.2053E-05	-0.084275	-4.8397E-05	-0.24457	-0.00014045	574.2779487806124	13.215	0.4494	13.148	12.993	13.443	-0.067495					46	15	4	0	0	0	0.026454	1	354	354		64.692	43.155	1	244310			2651	5048	1391	1391	3363	3363					-0.025624186815548455
ATKHNNRF	8	Unmodified	_ATKHNNRF_					0	0	0			REV__CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant	REV__CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7979736328125	2	494.259582	986.504612	0.62028	0.00030658	1.5971	0.0007894	2.2174	0.001096	494.25992433471686	44.864	0.52185	44.864	44.684	45.206	0					32	18	3	0	0	0	0.3366	1	10045	10045		18.135	0	1	280680	+		2652	13137	1392	1392	3364	3364					0.010819545633239613
ATKILSEVTRP	11	Unmodified	_ATKILSEVTRP_					0	0	0		ENST00000467405.1_1_10:14867493-14870188:-|nuORF;ENSG00000185267|ENST00000465530|CDNF	ENST00000467405.1_1_10:14867493-14870188:-|nuORF	ENST00000467405.1_1_10:14867493-14870188:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.5749816894531	3	405.574955	1213.70304	-0.048807	-1.9795E-05	0.29793	0.00012083	0.24912	0.00010104	405.57507900681924	28.855	0.83505	28.855	28.578	29.413	0					89	29	4	0	0	0	0.37764	1	5150	5150		14.171	1.9431	1	1509800			2653	7519	1393	1393	3365	3365					0.10473330631657518
ATKILSEVTRP	11	Unmodified	_ATKILSEVTRP_					0	0	0		ENST00000467405.1_1_10:14867493-14870188:-|nuORF;ENSG00000185267|ENST00000465530|CDNF	ENST00000467405.1_1_10:14867493-14870188:-|nuORF	ENST00000467405.1_1_10:14867493-14870188:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5750732421875	3	405.574955	1213.70304	-0.15166	-6.1509E-05	0.38756	0.00015718	0.2359	9.5675E-05	405.5751294447825	28.784	0.90518	28.78	28.467	29.372	-0.0042572					91	31	4	0	0	0	0.40539	1	5124	5124		10.527	1.2837	1	1711300			2654	7519	1393	1393	3366	3366					0.10473330631657518
ATKLEQQI	8	Unmodified	_ATKLEQQI_					0	0	0			REV__nc|ENSG00000138778|Q02224-3|CENPE	REV__nc|ENSG00000138778|Q02224-3|CENPE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.23681640625	2	465.766374	929.518196	0.47305	0.00022033	-1.0322	-0.00048076	-0.55913	-0.00026042	465.7660147699486	20.584	0.48193	20.531	20.327	20.809	-0.05291					20	16	2	0	0	0	0.34167	1	2659	2659		11.64	0	1	63851	+		2655	15957	1394	1394	3367	3367					0.05061767551910634
ATKLWWESLW	10	Unmodified	_ATKLWWESLW_					0	0	0			REV__nc|ENSG00000095321|P43155-3|CRAT	REV__nc|ENSG00000095321|P43155-3|CRAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.88623046875	3	440.564279	1318.67101	-0.20124	-8.866E-05	2.0371	0.00089748	1.8359	0.00080882	440.56517228880574	13.795	0.16193	13.795	13.74	13.902	0					8	5	2	0	0	0	0.41512	1	548	548		0.69767	0	1	20731	+		2656	14099	1395	1395	3368	3368					0.024419629485009864
ATKQTKKGI	9	Unmodified	_ATKQTKKGI_					0	0	0			REV__nc|ENSG00000165732|Q9NR30-2|DDX21	REV__nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.27423095703125	2	487.803291	973.59203	0.080818	3.9423E-05	0.59957	0.00029247	0.68038	0.00033189	487.80354580577887	16.553	0.31087	16.439	16.275	16.586	-0.11434					15	10	2	0	0	0	0.25431	1	1348	1348		9.3831	2.66	1	34210	+		2657	17263	1396	1396	3369	3369					0.10417735714224818
ATKQTKKGI	9	Unmodified	_ATKQTKKGI_					0	0	0			REV__nc|ENSG00000165732|Q9NR30-2|DDX21	REV__nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2740478515625	2	487.803291	973.59203	0.25623	0.00012499	0.26443	0.00012899	0.52066	0.00025398	487.80345220691186	16.46	0.29113	16.398	16.235	16.526	-0.062534					15	9	2	0	0	0	0.25431	1	1346	1346		9.3831	3.029	1	25023	+		2658	17263	1396	1396	3370	3370					0.10417735714224818
ATLAAVLQR	9	Unmodified	_ATLAAVLQR_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.79022216796875	2	471.790184	941.565815	0.046218	2.1805E-05	0.25614	0.00012085	0.30236	0.00014265	471.7902442642269	44.073	1.0348	44.073	43.767	44.802	0					111	37	4	0	0	0	3.0823E-17	2	9740	9695;9740		223.06	94.694	1	8980400			2659	5405	1397	1397	3371;3372	3372					0.09269466542764349
ATLAAVLQR	9	Unmodified	_ATLAAVLQR_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.79022216796875	2	471.790184	941.565815	0.19551	9.224E-05	0.080702	3.8074E-05	0.27621	0.00013031	471.7901535626326	43.925	0.92549	44.002	43.71	44.635	0.077518					114	34	4	0	0	0	3.0823E-17	2	9685	9640;9685		223.06	100.88	1	8983900			2660	5405	1397	1397	3373;3374	3374					0.09269466542764349
ATLAAVLQR	9	Unmodified	_ATLAAVLQR_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.7900695800781	2	471.790184	941.565815	0.22763	0.00010739	0.043677	2.0606E-05	0.27131	0.000128	471.79011885766147	43.872	1.0742	43.956	43.657	44.732	0.083996					113	39	4	0	0	0	1.7377E-16	1	9626	9626		206.75	96.074	1	10115000			2661	5405	1397	1397	3375	3375					0.09269466542764349
ATLDKDKK	8	Unmodified	_ATLDKDKK_					0	0	0			REV__nc|ENSG00000132321|Q86XH1-2|IQCA1	REV__nc|ENSG00000132321|Q86XH1-2|IQCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7660827636719	2	459.766374	917.518196	-0.27888	-0.00012822	0.31018	0.00014261	0.031301	1.4391E-05	459.76645260968326	13.041	1.0888	13.041	12.874	13.962	0					88	38	4	0	0	0	0.45544	1	346	346		3.9444	1.6417	1	554190	+		2662	15559	1398	1398	3376	3376					0.056137675519039476
ATLDVAVRR	9	Unmodified	_ATLDVAVRR_					0	0	0		ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;ENST00000496235.5_1_22:50685302-50686327:-|nuORF;ENST00000497952.5_1_22:50685106-50686347:-|nuORF;ENST00000454936.5_1_22:50684197-50686327:-|nuORF;HDAC10|p.A487V|1|0.29|ENSG00000100429|chr22:50246929-50246929|G/A|missense_variant	ENST00000477814.5_1_22:50684197-50686750:-|nuORF	ENST00000477814.5_1_22:50684197-50686750:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.82403564453125	2	500.79854	999.582528	0.078035	3.908E-05	1.505	0.00075371	1.5831	0.00079279	500.79952558998275	27.707	0.86957	27.707	27.408	28.277	0					89	29	4	0	0	0	0.042824	1	4740	4740		57.722	28.64	1	2080200			2663	1597	1399	1399	3377	3377					0.08271967428709104
ATLDVAVRR	9	Unmodified	_ATLDVAVRR_					0	0	0		ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;ENST00000496235.5_1_22:50685302-50686327:-|nuORF;ENST00000497952.5_1_22:50685106-50686347:-|nuORF;ENST00000454936.5_1_22:50684197-50686327:-|nuORF;HDAC10|p.A487V|1|0.29|ENSG00000100429|chr22:50246929-50246929|G/A|missense_variant	ENST00000477814.5_1_22:50684197-50686750:-|nuORF	ENST00000477814.5_1_22:50684197-50686750:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7995300292969	2	500.79854	999.582528	0.029326	1.4687E-05	1.4008	0.00070153	1.4301	0.00071621	500.79947663657356	27.682	1.0475	27.661	27.321	28.368	-0.021412					91	36	4	0	0	0	0.11201	1	4784	4784		36.506	14.969	1	2018600			2664	1597	1399	1399	3378	3378					0.08271967428709104
ATLDVAVRR	9	Unmodified	_ATLDVAVRR_					0	0	0		ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;ENST00000496235.5_1_22:50685302-50686327:-|nuORF;ENST00000497952.5_1_22:50685106-50686347:-|nuORF;ENST00000454936.5_1_22:50684197-50686327:-|nuORF;HDAC10|p.A487V|1|0.29|ENSG00000100429|chr22:50246929-50246929|G/A|missense_variant	ENST00000477814.5_1_22:50684197-50686750:-|nuORF	ENST00000477814.5_1_22:50684197-50686750:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8240966796875	2	500.79854	999.582528	-0.028167	-1.4106E-05	1.2605	0.00063125	1.2323	0.00061715	500.7993397951487	27.673	0.88182	27.661	27.374	28.256	-0.01156					85	30	4	0	0	0	0.0080395	1	4749	4749		72.968	31.128	1	2380500			2665	1597	1399	1399	3379	3379					0.08271967428709104
ATLEETLVKKK	11	Unmodified	_ATLEETLVKKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.5904846191406	3	420.590494	1258.74965	-0.12307	-5.1763E-05	0.76452	0.00032155	0.64145	0.00026979	420.5904755276805	26.771	1.0327	26.771	26.469	27.502	0					74	35	3	0	0	0	0.37255	1	4450	4450		14.838	3.7726	1	278700			2666	8609	1400	1400	3380	3380					0.13062770462920525
ATLEETLVKKK	11	Unmodified	_ATLEETLVKKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.5904846191406	3	420.590494	1258.74965	-0.00031313	-1.317E-07	0.54024	0.00022722	0.53993	0.00022709	420.59042244056474	26.787	0.73721	26.766	26.478	27.215	-0.021412					64	25	4	0	0	0	0.33432	1	4461	4461		19.144	4.306	1	239710			2667	8609	1400	1400	3381	3381					0.13062770462920525
ATLEETLVKKK	11	Unmodified	_ATLEETLVKKK_					0	0	0		ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	ENSG00000254093|ENST00000314787|PINX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.5903625488281	3	420.590494	1258.74965	0.19427	8.1706E-05	0.28478	0.00011978	0.47905	0.00020148	420.59029287296994	26.796	0.77752	26.784	26.541	27.318	-0.01156					55	27	3	0	0	0	0.32493	1	4457	4457		19.987	4.4484	1	274310			2668	8609	1400	1400	3382	3382					0.13062770462920525
ATLEIVTDK	9	Unmodified	_ATLEIVTDK_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.27899169921875	2	495.279315	988.544076	0.46824	0.00023191	-0.76723	-0.00037999	-0.29899	-0.00014808	495.27885832458713	38.015	0.64075	38.015	37.707	38.347	0					43	22	3	0	0	0	0.018042	1	7903	7903		67.081	35.812	1	473240			2669	2959	1401	1401	3383	3383					0.049346170035164505
ATLEIVTDK	9	Unmodified	_ATLEIVTDK_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	495.279315	988.544076	0.47416	0.00023484	-0.645	-0.00031946	-0.17084	-8.4614E-05	495.2788104306668	37.982	0.62747	38.072	37.772	38.399	0.090881	0.031312	7.0838E-05	NaN	67.081	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	458320			2670	2959	1401	1401							0.049346170035164505
ATLEIVTDK	9	Unmodified	_ATLEIVTDK_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	495.279315	988.544076	0.3195	0.00015824	-0.72227	-0.00035772	-0.40276	-0.00019948	495.2788863466642	37.939	0.63809	38.036	37.682	38.32	0.097527	-0.0048173	-5.6976E-06	NaN	67.081	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465170			2671	2959	1401	1401							0.049346170035164505
ATLFFILRK	9	Unmodified	_ATLFFILRK_					0	0	0		ENSG00000090432|ENST00000264198|MUL1	ENSG00000090432|ENST00000264198|MUL1	ENSG00000090432|ENST00000264198|MUL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.8477172851562	2	554.847502	1107.68045	0.45081	0.00025013	-0.47577	-0.00026398	-0.024967	-1.3853E-05	554.847283488063	58.494	0.35632	58.494	58.298	58.654	0					20	11	2	0	0	0	0.22215	1	14195	14195		20.415	12.504	1	287740			2672	1377	1402	1402	3384	3384					0.13091776024702995
ATLFFILRK	9	Unmodified	_ATLFFILRK_					0	0	0		ENSG00000090432|ENST00000264198|MUL1	ENSG00000090432|ENST00000264198|MUL1	ENSG00000090432|ENST00000264198|MUL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	554.847502	1107.68045	0.36346	0.00020166	-0.58725	-0.00032583	-0.22379	-0.00012417	554.8471749728047	58.314	0.41718	58.4	58.189	58.606	0.085621	-0.062363	5.8071E-05	NaN	20.415	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246730			2673	1377	1402	1402							0.13091776024702995
ATLFFILRK	9	Unmodified	_ATLFFILRK_					0	0	0		ENSG00000090432|ENST00000264198|MUL1	ENSG00000090432|ENST00000264198|MUL1	ENSG00000090432|ENST00000264198|MUL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	554.847502	1107.68045	0.6124	0.00033979	-0.73654	-0.00040867	-0.12414	-6.888E-05	554.8471746269405	58.507	0.381	58.493	58.331	58.712	-0.014267	0.030372	-0.0001076	NaN	20.415	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263940			2674	1377	1402	1402							0.13091776024702995
ATLGAILNR	9	Unmodified	_ATLGAILNR_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7824401855469	2	464.782359	927.550165	0.18592	8.6413E-05	-0.0693	-3.221E-05	0.11662	5.4203E-05	464.7822432771609	44.913	1.0606	44.913	44.633	45.694	0					91	38	4	0	0	0	1.5552E-11	1	9971	9971		198.25	94.502	1	3354600			2675	5241	1403	1403	3385	3385					0.08349180025709302
ATLGAILNR	9	Unmodified	_ATLGAILNR_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7822570800781	2	464.782359	927.550165	0.12929	6.009E-05	0.031574	1.4675E-05	0.16086	7.4765E-05	464.7822565287949	44.757	1.1163	44.825	44.54	45.656	0.068569					104	39	4	0	0	0	4.3828E-07	1	9907	9907		163.04	77.394	1	3629700			2676	5241	1403	1403	3386	3386					0.08349180025709302
ATLGAILNR	9	Unmodified	_ATLGAILNR_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7823791503906	2	464.782359	927.550165	0.37451	0.00017407	-0.21803	-0.00010134	0.15648	7.2729E-05	464.7821640797366	44.735	1.126	44.811	44.531	45.657	0.07505					97	41	4	0	0	0	1.2283E-05	1	9897	9897		155.03	73.136	1	3514500			2677	5241	1403	1403	3387	3387					0.08349180025709302
ATLGAILNRL	10	Unmodified	_ATLGAILNRL_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.3246459960938	2	521.324391	1040.63423	0.6518	0.0003398	-0.4122	-0.00021489	0.23961	0.00012491	521.3242619584611	65.678	1.6666	65.678	65.242	66.909	0					160	59	5	0	0	0	1.3922E-05	2	16396	16355;16396		148.27	52.157	1	11686000			2678	5241	1404	1404	3388;3389	3389					0.11553711122610366
ATLGAILNRL	10	Unmodified	_ATLGAILNRL_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.3246459960938	2	521.324391	1040.63423	0.32377	0.00016879	-0.10576	-5.5137E-05	0.21801	0.00011365	521.3244139822281	65.553	1.448	65.641	65.295	66.743	0.088882					125	52	3	0	0	0	3.3013E-05	2	16350	16302;16350		136.39	36.637	1	12029000			2679	5241	1404	1404	3390;3391	3391					0.11553711122610366
ATLGAILNRL	10	Unmodified	_ATLGAILNRL_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.324462890625	2	521.324391	1040.63423	0.54945	0.00028644	-0.30463	-0.00015881	0.24482	0.00012763	521.3242902962263	65.664	1.255	65.652	65.319	66.574	-0.011337					128	45	5	0	0	0	0.0092666	1	16343	16343		83.429	23.355	1	9758400			2680	5241	1404	1404	3392	3392					0.11553711122610366
ATLGDLKLVEK	11	Unmodified	_ATLGDLKLVEK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.84033203125	2	593.855721	1185.69689	0.59096	0.00035095	-0.39316	-0.00023348	0.1978	0.00011746	593.8553472262968	44.454	0.45464	44.454	44.255	44.71	0					35	16	3	0	0	0	0.035355	1	9895	9895		57.477	21.864	1	823100			2681	3408	1405	1405	3393	3393					0.11146812400102135
ATLGDLKLVEK	11	Unmodified	_ATLGDLKLVEK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8403930664062	2	593.855721	1185.69689	0.60591	0.00035982	-0.22591	-0.00013416	0.38	0.00022567	593.8554807855136	44.269	0.53527	44.338	44.147	44.682	0.068569					47	19	3	0	0	0	0.0010455	2	9800	9800;9848		96.24	50.217	1	802810			2682	3408	1405	1405	3394;3395	3394					0.11146812400102135
ATLGDLKLVEK	11	Unmodified	_ATLGDLKLVEK_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8556518554688	2	593.855721	1185.69689	0.42438	0.00025202	0.032179	1.911E-05	0.45656	0.00027113	593.855582655716	44.266	0.62695	44.341	44.122	44.749	0.075047					47	22	3	0	0	0	2.3775E-05	3	9796	9789;9796;9834		111.33	58.018	1	792800			2683	3408	1405	1405	3396;3397;3398	3397					0.11146812400102135
ATLGHRTVP	9	Unmodified	_ATLGHRTVP_					0	0	0		ENST00000525275.5_1_8:145154265-145154844:-|nuORF	ENST00000525275.5_1_8:145154265-145154844:-|nuORF	ENST00000525275.5_1_8:145154265-145154844:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.9413757324219	2	476.272158	950.529764	0.043412	2.0676E-05	-1.6883	-0.00080409	-1.6449	-0.00078341	476.27131730461485	25.794	0.39082	25.771	25.579	25.97	-0.022236					17	13	2	0	0	0	0.25879	1	4108	4108		4.756	0.81161	1	117470			2684	11536	1406	1406	3399	3399					0.05252009365892718
ATLGHRTVP	9	Unmodified	_ATLGHRTVP_					0	0	0		ENST00000525275.5_1_8:145154265-145154844:-|nuORF	ENST00000525275.5_1_8:145154265-145154844:-|nuORF	ENST00000525275.5_1_8:145154265-145154844:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	476.272158	950.529764	-0.0099631	-4.7452E-06	-1.4693	-0.00069977	-1.4792	-0.00070452	476.2714311876455	25.8	0.40302	25.761	25.582	25.985	-0.038671	-0.0052688	0.00013775	NaN	4.756	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162650			2685	11536	1406	1406							0.05252009365892718
ATLGLVDIVK	10	Unmodified	_ATLGLVDIVK_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2666625976562	2	514.82115	1027.62775	0.29152	0.00015008	-0.075084	-3.8655E-05	0.21643	0.00011142	514.8214419064219	59.658	0.51321	59.647	59.372	59.886	-0.011486					31	17	2	0	0	0	0.26049	1	14531	14531		35.612	5.7717	1	675650			2686	4547	1407	1407	3400	3400					0.1150377317121638
ATLIDRFVK	9	Unmodified	_ATLIDRFVK_					0	0	0		nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8067016601562	2	531.818941	1061.62333	0.18519	9.8486E-05	-0.35655	-0.00018962	-0.17137	-9.1136E-05	531.8186647313335	18.708	0.87192	18.591	18.242	19.114	-0.11739					46	30	2	0	0	0	0.25779	1	1970	1970		6.2058	0.47393	1	50773			2687	1787	1408	1408	3401	3401					0.09498308748334239
ATLIGLSIKVK	11	Unmodified	_ATLIGLSIKVK_					0	0	0		ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B	ENST00000569299.1_1_16:66967504-66968009:-|nuORF	ENST00000569299.1_1_16:66967504-66968009:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.8792114257812	2	571.878999	1141.74344	0.55546	0.00031766	0.081568	4.6647E-05	0.63703	0.0003643	571.8790113183522	50.942	0.61654	50.942	50.738	51.354	0					48	22	3	0	0	0	0.030042	2	11839	11839;11903		59.013	41.9	1	819570			2688	6098	1409	1409	3402;3403	3402					0.17824297022070823
ATLIGLSIKVK	11	Unmodified	_ATLIGLSIKVK_					0	0	0		ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B	ENST00000569299.1_1_16:66967504-66968009:-|nuORF	ENST00000569299.1_1_16:66967504-66968009:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.8793334960938	2	571.878999	1141.74344	0.54405	0.00031113	0.025356	1.45E-05	0.56941	0.00032563	571.8789822023455	50.958	0.53072	51.005	50.741	51.271	0.046577					47	19	3	0	0	0	0.0039637	1	11869	11869		82.445	56.424	1	843390			2689	6098	1409	1409	3404	3404					0.17824297022070823
ATLIGLSIKVK	11	Unmodified	_ATLIGLSIKVK_					0	0	0		ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B	ENST00000569299.1_1_16:66967504-66968009:-|nuORF	ENST00000569299.1_1_16:66967504-66968009:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	571.878999	1141.74344	0.51267	0.00029319	0.31461	0.00017992	0.82728	0.00047311	571.8790631098985	50.995	0.43736	51.004	50.783	51.22	0.0095673	0.02053	0.00022116	NaN	82.445	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475210			2690	6098	1409	1409							0.17824297022070823
ATLKDITRRLK	11	Unmodified	_ATLKDITRRLK_					0	0	0		ENST00000472202.1_1_10:7830197-7841158:+|nuORF;nc|ENSG00000165629|P36542-2|ATP5F1C;ENSG00000165629|ENST00000356708|ATP5F1C	ENST00000472202.1_1_10:7830197-7841158:+|nuORF	ENST00000472202.1_1_10:7830197-7841158:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.94500732421875	3	438.945383	1313.81432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.554	1	31.554	31.054	32.054	0								0	0	0	0.35192	1	5910	5910		7.8089	5.3741	1				2691	5981	1410	1410	3405	3405					0.16996390059580335
ATLKLLSI	8	Unmodified	_ATLKLLSI_					0	0	0		nc|ENSG00000250067|A6XGL0-2|YJEFN3;ENST00000458210.7_1_19:19645671-19648330:+|nuORF;ENSG00000250067|ENST00000514277|YJEFN3	nc|ENSG00000250067|A6XGL0-2|YJEFN3	nc|ENSG00000250067|A6XGL0-2|YJEFN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.7557067871094	2	429.786579	857.558604	-0.018958	-8.1477E-06	-0.5384	-0.0002314	-0.55736	-0.00023955	429.7863500778176	49.73	0.43163	49.73	49.462	49.894	0					22	15	2	0	0	0	0.32537	1	11447	11447		18.146	0	1	220740			2692	8588	1411	1411	3406	3406					0.12412733942323939
ATLKWILENK	10	Unmodified	_ATLKWILENK_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF	ENSG00000196275|ENST00000451013|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.9079284667969	3	405.908046	1214.70231	0.059101	2.399E-05	-0.21816	-8.8553E-05	-0.15906	-6.4563E-05	405.90777612211707	48.597	0.49759	48.597	48.358	48.856	0					52	17	4	0	0	0	0.21955	1	11136	11136		53.367	27.246	1	981720			2693	8667;6792;10706	1412	1412	3407	3407					0.10354535982583002
ATLKWILENK	10	Unmodified	_ATLKWILENK_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF	ENSG00000196275|ENST00000451013|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8603515625	2	608.358431	1214.70231	0.54388	0.00033087	-0.21062	-0.00012813	0.33326	0.00020274	608.3582133180408	48.598	0.52479	48.598	48.358	48.883	0					41	18	3	0	0	0	0.14152	1	11143	11143		89.609	62.385	1	947730			2694	8667;6792;10706	1412	1412	3408	3408					0.10354535982583002
ATLKWILENK	10	Unmodified	_ATLKWILENK_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF	ENSG00000196275|ENST00000451013|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.3588256835938	2	608.358431	1214.70231	0.7272	0.0004424	-0.22638	-0.00013772	0.50082	0.00030468	608.3582190697862	48.574	0.5149	48.619	48.363	48.878	0.044891					43	18	3	0	0	0	0.023019	3	11153	11081;11141;11153		72.59	54.216	1	942500			2695	8667;6792;10706	1412	1412	3409;3410;3411	3411					0.10354535982583002
ATLKWILENK	10	Unmodified	_ATLKWILENK_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF	ENSG00000196275|ENST00000451013|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.8982849121094	3	405.908046	1214.70231	0.22815	9.2607E-05	-0.59915	-0.0002432	-0.37101	-0.00015059	405.9077402550741	48.548	0.59403	48.595	48.314	48.908	0.046646					49	21	3	0	0	0	0.2547	1	11090	11090		41.567	22.423	1	686510			2696	8667;6792;10706	1412	1412	3412	3412					0.10354535982583002
ATLKWILENK	10	Unmodified	_ATLKWILENK_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF	ENSG00000196275|ENST00000451013|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.3442993164062	2	608.358431	1214.70231	0.46215	0.00028115	-0.02889	-1.7575E-05	0.43326	0.00026358	608.358343677466	48.458	0.51844	48.501	48.294	48.812	0.043324					43	18	3	0	0	0	0.03854	2	11105	11061;11105		68.484	46.894	1	755140			2697	8667;6792;10706	1412	1412	3413;3414	3414					0.10354535982583002
ATLKWILENK	10	Unmodified	_ATLKWILENK_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000196275|Q86UP8-2|GTF2IRD2;nc|ENSG00000174428|Q6EKJ0-2|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-5|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF	ENSG00000196275|ENST00000451013|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;ENST00000457594.2_7:74237150-74267816:-|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.89837646484375	3	405.908046	1214.70231	0.1079	4.3799E-05	-0.40289	-0.00016354	-0.29499	-0.00011974	405.90778759191323	48.516	0.59633	48.554	48.238	48.834	0.037994					52	21	4	0	0	0	0.28986	1	11115	11115		21.666	10.035	1	631830			2698	8667;6792;10706	1412	1412	3415	3415					0.10354535982583002
ATLLIFANK	9	Unmodified	_ATLLIFANK_					0	0	0		ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.8029479980469	2	495.80276	989.590967	0.49896	0.00024738	-0.075019	-3.7195E-05	0.42394	0.00021019	495.80260126092014	56.763	1.0498	56.763	56.528	57.578	0					98	38	4	0	0	0	1.3869E-07	3	13669	13621;13669;13722		174.73	93.114	1	2233000			2699	8346	1413	1413	3416;3417;3418	3417					0.09575521345323068
ATLLIFANK	9	Unmodified	_ATLLIFANK_					0	0	0		ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.8028564453125	2	495.80276	989.590967	0.57301	0.0002841	-0.14952	-7.4132E-05	0.42349	0.00020997	495.80257735924386	56.638	0.96838	56.717	56.462	57.43	0.078674					88	35	4	0	0	0	8.4618E-08	2	13598	13598;13645		176.84	95.224	1	2258200			2700	8346	1413	1413	3419;3420	3419					0.09575521345323068
ATLLIFANK	9	Unmodified	_ATLLIFANK_					0	0	0		ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.8028869628906	2	495.80276	989.590967	0.7984	0.00039585	-0.28327	-0.00014045	0.51512	0.0002554	495.80255860157786	56.834	0.65462	56.814	56.541	57.196	-0.019077					61	23	3	0	0	0	4.1361E-11	3	13675	13626;13675;13729		189.78	108.16	1	2435200			2701	8346	1413	1413	3421;3422;3423	3422					0.09575521345323068
ATLLIQYERL	10	Unmodified	_ATLLIQYERL_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-3|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2400207519531	3	407.239684	1218.69722	0.0072132	2.9375E-06	-0.088871	-3.6192E-05	-0.081658	-3.3254E-05	407.2396750088866	48.68	0.5119	48.712	48.471	48.983	0.032043					42	18	3	0	0	0	0.34535	1	11157	11157		13.519	2.4534	1	815870			2702	2221	1414	1414	3424	3424					0.09662232119990222
ATLLIQYERL	10	Unmodified	_ATLLIQYERL_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-3|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	407.239684	1218.69722	0.024154	9.8365E-06	-0.080269	-3.2689E-05	-0.056115	-2.2852E-05	407.2396303821207	48.823	0.44192	48.823	48.528	48.97	0	0.045618	0.00010782	NaN	13.519	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385130			2703	2221	1414	1414							0.09662232119990222
ATLLPDLIQK	10	Unmodified	_ATLLPDLIQK_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000531486.1_1_17:45681241-45696545:+|nuORF;ENST00000530514.5_1_17:45668242-45699283:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8135375976562	2	556.339707	1110.66486	0.72219	0.00040178	-0.58881	-0.00032758	0.13337	7.4201E-05	556.3392209489998	60.659	0.54922	60.659	60.413	60.962	0					49	19	4	0	0	0	0.29144	1	14858	14858		26.021	10.772	1	1827900			2704	4363	1415	1415	3425	3425					0.11395444716981729
ATLLPDLIQK	10	Unmodified	_ATLLPDLIQK_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000531486.1_1_17:45681241-45696545:+|nuORF;ENST00000530514.5_1_17:45668242-45699283:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8133544921875	2	556.339707	1110.66486	0.64432	0.00035846	-0.72006	-0.0004006	-0.075744	-4.2139E-05	556.3391442755247	60.581	0.57985	60.678	60.369	60.949	0.096989					51	20	3	0	0	0	0.30504	1	14822	14822		21.59	6.3417	1	1982900			2705	4363	1415	1415	3426	3426					0.11395444716981729
ATLLPDLIQK	10	Unmodified	_ATLLPDLIQK_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000531486.1_1_17:45681241-45696545:+|nuORF;ENST00000530514.5_1_17:45668242-45699283:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8134155273438	2	556.339707	1110.66486	0.65745	0.00036576	-0.68117	-0.00037896	-0.023726	-1.32E-05	556.3391127135101	60.596	0.56236	60.586	60.326	60.888	-0.0094566					51	20	3	0	0	0	0.30504	1	14849	14849		16.566	2.951	1	2078600			2706	4363	1415	1415	3427	3427					0.11395444716981729
ATLLVTYY	8	Unmodified	_ATLLVTYY_					0	0	0		nc|ENSG00000103313|O15553-3|MEFV;nc|ENSG00000103313|O15553-1|MEFV;ENSG00000103313|ENST00000219596|MEFV	nc|ENSG00000103313|O15553-3|MEFV	nc|ENSG00000103313|O15553-3|MEFV	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2610778808594	2	472.260394	942.506234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.572	1	41.663	41.163	42.163	0.090252								0	0	0	0.36169	1	8974	8974		9.3474	0	1				2707	1827	1416	1416	3428	3428					0.03268150808708015
ATLNSFIHV	9	Unmodified	_ATLNSFIHV_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2752685546875	2	501.274367	1000.53418	0.47326	0.00023723	-0.30094	-0.00015086	0.17232	8.6377E-05	501.2743179164017	58.446	0.89509	58.446	58.128	59.024	0					85	30	4	0	0	0	0.00045155	3	14137	14137;14183;14233		129.77	71.792	1	2447800			2708	453	1417	1417	3429;3430;3431	3429					0.03393473788810297
ATLNSFIHV	9	Unmodified	_ATLNSFIHV_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.27471923828125	2	501.274367	1000.53418	0.38344	0.00019221	0.013077	6.5554E-06	0.39651	0.00019876	501.27436438439406	58.262	1.0185	58.348	58.053	59.071	0.085621					80	35	4	0	0	0	0.00070271	2	14086	14086;14172		126.57	71.792	1	2769300			2709	453	1417	1417	3432;3433	3432					0.03393473788810297
ATLNSFIHV	9	Unmodified	_ATLNSFIHV_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2748718261719	2	501.274367	1000.53418	0.71145	0.00035663	-0.25685	-0.00012875	0.45459	0.00022788	501.2742202850275	58.494	0.7223	58.48	58.195	58.917	-0.014267					60	25	3	0	0	0	5.0285E-07	2	14151	14151;14199		160.52	78.903	1	2705100			2710	453	1417	1417	3434;3435	3434					0.03393473788810297
ATLNSIVAK	9	Unmodified	_ATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7763977050781	2	458.776742	915.538931	0.29187	0.0001339	-0.44538	-0.00020433	-0.15352	-7.0431E-05	458.7764446900337	33.665	0.70886	33.665	33.365	34.074	0					61	25	3	0	0	0	0.00082904	2	6546	6546;6587		124.95	51.985	1	1072400			2711	386	1418	1418	3436;3437	3436					0.07778357931556457
ATLNSIVAK	9	Unmodified	_ATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7765808105469	2	458.776742	915.538931	0.49827	0.00022859	-0.40592	-0.00018623	0.092345	4.2366E-05	458.77648658463517	33.564	0.82637	33.63	33.266	34.092	0.066357					68	29	3	0	0	0	1.3973E-05	1	6514	6514		154.75	65.352	1	1192700			2712	386	1418	1418	3438	3438					0.07778357931556457
ATLNSIVAK	9	Unmodified	_ATLNSIVAK_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7764587402344	2	458.776742	915.538931	-0.00088377	-4.0545E-07	0.10643	4.8827E-05	0.10554	4.8421E-05	458.776701152494	33.56	0.91186	33.627	33.055	33.967	0.066704					69	32	4	0	0	0	6.0404E-05	1	6495	6495		147.24	61.599	1	1294300			2713	386	1418	1418	3439	3439					0.07778357931556457
ATLNVSTTR	9	Unmodified	_ATLNVSTTR_					0	0	0		nc|ENSG00000088448|Q9NXR5-2|ANKRD10;ENST00000460846.1_1_13:111557570-111567134:-|nuORF;ENSG00000088448|ENST00000267339|ANKRD10	nc|ENSG00000088448|Q9NXR5-2|ANKRD10	nc|ENSG00000088448|Q9NXR5-2|ANKRD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7667541503906	2	481.766906	961.519259	0.056901	2.7413E-05	-0.20625	-9.9362E-05	-0.14934	-7.1949E-05	481.76675731071936	25.608	0.65814	25.608	25.267	25.925	0					36	22	2	0	0	0	0.0018978	2	4114	4063;4114		111.31	59.679	1	1101300			2714	12602	1419	1419	3440;3441	3441					0.03695981920793656
ATLNVSTTR	9	Unmodified	_ATLNVSTTR_					0	0	0		nc|ENSG00000088448|Q9NXR5-2|ANKRD10;ENST00000460846.1_1_13:111557570-111567134:-|nuORF;ENSG00000088448|ENST00000267339|ANKRD10	nc|ENSG00000088448|Q9NXR5-2|ANKRD10	nc|ENSG00000088448|Q9NXR5-2|ANKRD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7667236328125	2	481.766906	961.519259	-0.049063	-2.3637E-05	-0.057012	-2.7467E-05	-0.10607	-5.1103E-05	481.76681612737326	25.624	0.60396	25.568	25.281	25.885	-0.055931					34	20	2	0	0	0	0.0099976	1	4096	4096		79.427	45.025	1	1255700			2715	12602	1419	1419	3442	3442					0.03695981920793656
ATLNVSTTR	9	Unmodified	_ATLNVSTTR_					0	0	0		nc|ENSG00000088448|Q9NXR5-2|ANKRD10;ENST00000460846.1_1_13:111557570-111567134:-|nuORF;ENSG00000088448|ENST00000267339|ANKRD10	nc|ENSG00000088448|Q9NXR5-2|ANKRD10	nc|ENSG00000088448|Q9NXR5-2|ANKRD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7666320800781	2	481.766906	961.519259	0.021201	1.0214E-05	-0.048419	-2.3327E-05	-0.027218	-1.3113E-05	481.76677757067347	25.67	0.80121	25.648	25.304	26.105	-0.022236					89	28	5	0	0	0	0.0035713	1	4092	4092		97.741	53.969	1	1584900			2716	12602	1419	1419	3443	3443					0.03695981920793656
ATLPGRDHH	9	Unmodified	_ATLPGRDHH_					0	0	0		ENST00000528856.5_1_11:34073295-34118749:+|nuORF;ENST00000526477.5_1_11:34073295-34074390:+|nuORF	ENST00000528856.5_1_11:34073295-34118749:+|nuORF	ENST00000528856.5_1_11:34073295-34118749:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2925720214844	2	502.25704	1002.49953	0.061123	3.07E-05	-0.34237	-0.00017196	-0.28124	-0.00014126	502.2567492760043	15.43	0.76234	15.366	15.128	15.89	-0.064413					70	25	3	0	0	0	0.25066	1	1130	1130		11.64	11.64	1	846660			2717	11554	1420	1420	3444	3444					-0.0016234929929623831
ATLPGRDHH	9	Unmodified	_ATLPGRDHH_					0	0	0		ENST00000528856.5_1_11:34073295-34118749:+|nuORF;ENST00000526477.5_1_11:34073295-34074390:+|nuORF	ENST00000528856.5_1_11:34073295-34118749:+|nuORF	ENST00000528856.5_1_11:34073295-34118749:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	502.25704	1002.49953	0.070785	3.5552E-05	-0.23579	-0.00011843	-0.165	-8.2874E-05	502.2567871342301	15.297	0.84607	15.297	15.072	15.918	0	-0.032319	0.00011014	NaN	7.2892	67	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	785530			2718	11554	1420	1420							-0.0016234929929623831
ATLPMHLL	8	Unmodified	_ATLPMHLL_					0	0	0		ENST00000526047.1_1_11:74618188-74632322:-|nuORF	ENST00000526047.1_1_11:74618188-74632322:-|nuORF	ENST00000526047.1_1_11:74618188-74632322:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.27154541015625	2	448.257131	894.499709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.518	1	35.604	35.104	36.104	0.08625								0	0	0	0.35985	1	7113	7113		10.183	0	1				2719	11545	1421	1421	3445	3445					0.04823934376338457
ATLQDIIRRF	10	Unmodified	_ATLQDIIRRF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.5750427246094	3	411.575178	1231.70371	0.15316	6.3035E-05	-0.47293	-0.00019465	-0.31977	-0.00013161	411.5749414179713	65.669	0.74691	65.669	65.405	66.152	0					49	26	3	0	0	0	0.33036	1	16410	16410		16.275	12.429	1	504460			2720	1603;1655	1422	1422	3446	3446					0.0971217007136147
ATLQDIIRRF	10	Unmodified	_ATLQDIIRRF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.575178	1231.70371	0.072414	2.9804E-05	-0.35758	-0.00014717	-0.28516	-0.00011737	411.57504846378595	65.508	0.56866	65.597	65.352	65.921	0.088882	-0.042054	0.00016189	NaN	16.275	49	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	447750			2721	1603;1655	1422	1422							0.0971217007136147
ATLQDIIRRF	10	Unmodified	_ATLQDIIRRF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	411.575178	1231.70371	0.30527	0.00012564	-0.62518	-0.00025731	-0.31991	-0.00013167	411.5749125203607	65.663	0.80019	65.651	65.201	66.002	-0.011337	0.012039	-0.00016852	NaN	16.275	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476230			2722	1603;1655	1422	1422							0.0971217007136147
ATLQEALAH	9	Unmodified	_ATLQEALAH_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.77191162109375	2	477.256174	952.497795	0.28106	0.00013414	0.27562	0.00013154	0.55669	0.00026568	477.25610960534107	36.658	0.51629	36.658	36.385	36.902	0					30	17	2	0	0	0	0.00019464	2	7477	7450;7477		133.05	58.123	1	344700			2723	4052	1423	1423	3447;3448	3448					0.019645968920826817
ATLQEALAH	9	Unmodified	_ATLQEALAH_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.77197265625	2	477.256174	952.497795	0.39	0.00018613	0.0054816	2.6161E-06	0.39548	0.00018875	477.2559761243483	36.468	0.58851	36.55	36.331	36.919	0.082359					38	20	3	0	0	0	0.014206	1	7452	7452		72.968	33.011	1	447760			2724	4052	1423	1423	3449	3449					0.019645968920826817
ATLQEALAH	9	Unmodified	_ATLQEALAH_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.25592041015625	2	477.256174	952.497795	0.70543	0.00033667	-0.52258	-0.00024941	0.18285	8.7266E-05	477.2557863369318	36.49	0.47856	36.576	36.333	36.811	0.08625					32	16	3	0	0	0	7.3453E-05	2	7399	7399;7442		145.13	70.201	1	425690			2725	4052	1423	1423	3450;3451	3450					0.019645968920826817
ATLQRIYS	8	Unmodified	_ATLQRIYS_					0	0	0		ENSG00000084674|ENST00000233242|APOB;APOB|p.G3575Afs*48|1|0.18|ENSG00000084674|chr2:21006144-21006144|C/-|frameshift_variant	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.2501220703125	2	476.266542	950.51853	0.12947	6.1662E-05	0.15357	7.3139E-05	0.28304	0.0001348	476.266387390476	24.818	0.26333	24.818	24.639	24.902	0					14	8	2	0	0	0	0.34272	1	3818	3818		7.9102	0.62092	1	55259			2726	1244	1424	1424	3452	3452					0.041291872717465594
ATLQRIYS	8	Unmodified	_ATLQRIYS_					0	0	0		ENSG00000084674|ENST00000233242|APOB;APOB|p.G3575Afs*48|1|0.18|ENSG00000084674|chr2:21006144-21006144|C/-|frameshift_variant	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	476.266542	950.51853	-0.052246	-2.4883E-05	1.0243	0.00048784	0.97205	0.00046296	476.26706087520523	24.846	0.24052	24.814	24.681	24.922	-0.031408	-0.0019275	0.00012375	NaN	7.9102	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47052			2727	1244	1424	1424							0.041291872717465594
ATLQRVLYV	9	Unmodified	_ATLQRVLYV_					0	0	0			REV__ENST00000369299.7_1_1:145580513-145580615:+|nuORF	REV__ENST00000369299.7_1_1:145580513-145580615:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8062744140625	2	531.818941	1061.62333	0.15567	8.2788E-05	-0.23531	-0.00012514	-0.079638	-4.2353E-05	531.8187361380695	18.636	1.1899	18.578	17.98	19.17	-0.058172					61	41	2	0	0	0	0.25526	1	1926	1926		7.9102	0	1	70108	+		2728	15536	1425	1425	3453	3453					0.09498308748334239
ATLQTPLGR	9	Unmodified	_ATLQTPLGR_					0	0	0		nc|ENSG00000170325|Q9NQV6-2|PRDM10;nc|ENSG00000170325|Q9NQV6-1|PRDM10;nc|ENSG00000170325|Q9NQV6-5|PRDM10;nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10	nc|ENSG00000170325|Q9NQV6-2|PRDM10	nc|ENSG00000170325|Q9NQV6-2|PRDM10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7618408203125	2	478.779816	955.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.172	1	34.172	33.672	34.672	0								0	0	0	0.22377	1	6709	6709		14.838	1.7958	1				2729	6444	1426	1426	3454	3454					0.0655287616308442
ATLQYIVGR	9	Unmodified	_ATLQYIVGR_					0	0	0		ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.7956237792969	2	510.795466	1019.57638	0.43908	0.00022428	-0.007547	-3.855E-06	0.43154	0.00022043	510.79533669289805	44.337	0.59354	44.406	44.249	44.843	0.068569					53	21	4	0	0	0	0.15943	1	9833	9833		39.95	20.693	1	650300			2730	1255	1427	1427	3455	3455					0.06737449197180467
ATLQYIVGR	9	Unmodified	_ATLQYIVGR_					0	0	0		ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	510.795466	1019.57638	0.51157	0.00026131	-0.34426	-0.00017584	0.16732	8.5465E-05	510.79530670169004	44.523	0.55136	44.523	44.33	44.881	0	0.082784	-0.00033121	NaN	86.332	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573620			2731	1255	1427	1427							0.06737449197180467
ATLQYIVGR	9	Unmodified	_ATLQYIVGR_					0	0	0		ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	510.795466	1019.57638	0.29131	0.0001488	0.15624	7.9808E-05	0.44755	0.00022861	510.79547111347466	44.317	0.52274	44.392	44.174	44.697	0.075047	-0.048164	0.0001801	NaN	86.332	45	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608670			2732	1255	1427	1427							0.06737449197180467
ATLRLIIRH	9	Unmodified	_ATLRLIIRH_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;ENST00000524657.1_1_11:67020024-67022523:+|nuORF;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8541259765625	2	546.85365	1091.69275	0.45919	0.00025111	-0.017494	-9.5666E-06	0.4417	0.00024154	546.8535796407929	32.847	0.62655	32.847	32.633	33.259	0					42	21	3	0	0	0	0.22935	1	6298	6298		19.362	1.2156	1	527930			2733	6693	1428	1428	3456	3456					0.15056812487750904
ATLRLIIRH	9	Unmodified	_ATLRLIIRH_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;ENST00000524657.1_1_11:67020024-67022523:+|nuORF;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8541870117188	2	546.85365	1091.69275	0.61703	0.00033742	-0.12572	-6.8752E-05	0.4913	0.00026867	546.8535846901319	32.74	0.55341	32.795	32.59	33.143	0.055313					39	19	3	0	0	0	0.25714	1	6264	6264		15.248	5.1746	1	525460			2734	6693	1428	1428	3457	3457					0.15056812487750904
ATLRLIIRH	9	Unmodified	_ATLRLIIRH_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;ENST00000524657.1_1_11:67020024-67022523:+|nuORF;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8539428710938	2	546.85365	1091.69275	0.5464	0.0002988	0.080475	4.4008E-05	0.62688	0.00034281	546.8535874921077	32.75	0.48979	32.805	32.603	33.093	0.054371					40	17	3	0	0	0	0.14786	1	6282	6282		31.268	0.6318	1	618420			2735	6693	1428	1428	3458	3458					0.15056812487750904
ATLRLQPF	8	Unmodified	_ATLRLQPF_					0	0	0		ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	ENSG00000078898|ENST00000170150|BPIFB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.5956115722656	2	473.279452	944.544351	-0.022292	-1.055E-05	0.60433	0.00028602	0.58204	0.00027547	473.2798138973994	42.014	0.26604	42.014	41.9	42.166	0					12	8	2	0	0	0	0.34046	1	9086	9086		14.582	2.0501	1	341270			2736	1121	1429	1429	3459	3459					0.06986081514025955
ATLSEARLK	9	Unmodified	_ATLSEARLK_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7931823730469	2	494.792924	987.571294	0.19661	9.7283E-05	-0.092564	-4.58E-05	0.10405	5.1483E-05	494.7929229764041	22.722	0.5497	22.722	22.42	22.969	0					45	18	3	0	0	0	0.27303	1	3236	3236		12.873	2.0731	1	135700			2737	5086	1430	1430	3460	3460					0.07701145334556259
ATLSEARLK	9	Unmodified	_ATLSEARLK_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7929992675781	2	494.792924	987.571294	0.19116	9.4584E-05	-0.17603	-8.7097E-05	0.015132	7.4871E-06	494.79301647596384	22.821	0.61596	22.734	22.321	22.937	-0.087608					48	21	3	0	0	0	0.2141	1	3271	3271		21.59	3.2171	1	176890			2738	5086	1430	1430	3461	3461					0.07701145334556259
ATLSEARLK	9	Unmodified	_ATLSEARLK_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.79278564453125	2	494.792924	987.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.836	1	22.791	22.291	23.291	-0.044867								0	0	0	0.13984	1	3263	3263		37.075	13.285	1				2739	5086	1430	1430	3462	3462					0.07701145334556259
ATLSEIKALLK	11	Unmodified	_ATLSEIKALLK_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.2825927734375	2	593.873914	1185.73327	0.82966	0.00049271	-0.46405	-0.00027559	0.36561	0.00021713	593.873488522892	55.762	0.39867	55.762	55.594	55.992	0					29	13	3	0	0	0	0.32863	1	13369	13369		11.518	7.6415	1	455060			2740	970	1431	1431	3463	3463					0.1478368929683711
ATLSEIKALLK	11	Unmodified	_ATLSEIKALLK_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.2825317382812	2	593.873914	1185.73327	0.76503	0.00045433	-0.84291	-0.00050058	-0.077872	-4.6246E-05	593.8734144079922	55.733	0.42422	55.804	55.565	55.989	0.070885					31	15	3	0	0	0	0.32563	1	13334	13334		17.049	14.766	1	459610			2741	970	1431	1431	3464	3464					0.1478368929683711
ATLSEIKALLK	11	Unmodified	_ATLSEIKALLK_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.2822875976562	2	593.873914	1185.73327	0.87663	0.00052061	-1.2744	-0.00075684	-0.39778	-0.00023623	593.8731266801489	56.022	0.35885	56.003	55.774	56.133	-0.019081					21	12	2	0	0	0	0.32719	1	13422	13422		14.218	8.4863	1	370020			2742	970	1431	1431	3465	3465					0.1478368929683711
ATLSQFYINK	10	Unmodified	_ATLSQFYINK_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.8193359375	2	592.819138	1183.62372	0.56563	0.00033532	-0.037499	-2.223E-05	0.52813	0.00031309	592.8190267841868	49.197	0.68139	49.197	48.944	49.626	0					62	24	4	0	0	0	1.3584E-13	1	11330	11330		187.14	145.3	1	1100800			2743	8173	1432	1432	3466	3466					0.03925683677516645
ATLSQFYINK	10	Unmodified	_ATLSQFYINK_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.8195190429688	2	592.819138	1183.62372	0.39701	0.00023535	0.21147	0.00012536	0.60848	0.00036072	592.8191586915781	49.242	0.67556	49.287	49.045	49.721	0.044891					64	24	4	0	0	0	2.6036000000000002E-20	1	11332	11332		208.35	158.42	1	1365400			2744	8173	1432	1432	3467	3467					0.03925683677516645
ATLSQFYINK	10	Unmodified	_ATLSQFYINK_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.8193359375	2	592.819138	1183.62372	0.2423	0.00014364	0.34329	0.00020351	0.58559	0.00034715	592.8192734074106	49.175	0.88242	49.207	48.954	49.837	0.032043					69	31	4	0	0	0	4.613E-09	1	11313	11313		174.48	124.55	1	1221600			2745	8173	1432	1432	3468	3468					0.03925683677516645
ATLTKDVPK	9	Unmodified	_ATLTKDVPK_					0	0	0		ENSG00000189337|ENST00000376030|KAZN;nc|ENSG00000189337|Q674X7-4|KAZN;nc|ENSG00000189337|Q674X7-3|KAZN;nc|ENSG00000189337|Q674X7-2|KAZN;nc|ENSG00000189337|Q674X7-5|KAZN;ENST00000491547.1_1_1:14925349-15387014:+|nuORF	ENSG00000189337|ENST00000376030|KAZN	ENSG00000189337|ENST00000376030|KAZN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7898864746094	2	486.78985	971.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.245	1	20.245	19.745	20.745	0								0	0	0	0.21283	1	2479	2479		18.373	0.22675	1				2746	7812	1433	1433	3469	3469					0.07822627103041668
ATLTKDVPK	9	Unmodified	_ATLTKDVPK_					0	0	0		ENSG00000189337|ENST00000376030|KAZN;nc|ENSG00000189337|Q674X7-4|KAZN;nc|ENSG00000189337|Q674X7-3|KAZN;nc|ENSG00000189337|Q674X7-2|KAZN;nc|ENSG00000189337|Q674X7-5|KAZN;ENST00000491547.1_1_1:14925349-15387014:+|nuORF	ENSG00000189337|ENST00000376030|KAZN	ENSG00000189337|ENST00000376030|KAZN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7901916503906	2	486.78985	971.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.44	1	20.33	19.83	20.83	-0.11003								0	0	0	0.20287	1	2540	2540		21.59	3.4438	1				2747	7812	1433	1433	3470	3470					0.07822627103041668
ATLTKDVPK	9	Unmodified	_ATLTKDVPK_					0	0	0		ENSG00000189337|ENST00000376030|KAZN;nc|ENSG00000189337|Q674X7-4|KAZN;nc|ENSG00000189337|Q674X7-3|KAZN;nc|ENSG00000189337|Q674X7-2|KAZN;nc|ENSG00000189337|Q674X7-5|KAZN;ENST00000491547.1_1_1:14925349-15387014:+|nuORF	ENSG00000189337|ENST00000376030|KAZN	ENSG00000189337|ENST00000376030|KAZN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7901611328125	2	486.78985	971.565146	0.62652	0.00030498	-0.3119	-0.00015183	0.31462	0.00015315	486.78972500818236	20.287	0.26516	20.234	20.122	20.387	-0.052912					15	9	2	0	0	0	0.19905	1	2498	2498		23.79	1.0535	1	100380			2748	7812	1433	1433	3471	3471					0.07822627103041668
ATLTNILEH	9	Unmodified	_ATLTNILEH_					0	0	0		nc|ENSG00000140853|Q86WI3-3|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5	nc|ENSG00000140853|Q86WI3-3|NLRC5	nc|ENSG00000140853|Q86WI3-3|NLRC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2774963378906	2	506.277106	1010.53966	0.40079	0.00020291	0.73352	0.00037136	1.1343	0.00057427	506.2778002771684	49.66	1.5229	49.66	49.19	50.713	0					96	55	5	0	0	0	2.5511E-05	2	11449	11449;11486		152.89	48.967	1	2662100			2749	4340	1434	1434	3472;3473	3472					0.03481152580627622
ATLTNILEH	9	Unmodified	_ATLTNILEH_					0	0	0		nc|ENSG00000140853|Q86WI3-3|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5	nc|ENSG00000140853|Q86WI3-3|NLRC5	nc|ENSG00000140853|Q86WI3-3|NLRC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2773132324219	2	506.277106	1010.53966	0.32225	0.00016315	0.51794	0.00026222	0.84019	0.00042537	506.2777540623852	49.658	1.2339	49.703	49.394	50.628	0.044891					75	45	3	0	0	0	2.5511E-05	2	11445	11445;11475		152.89	33.991	1	3155200			2750	4340	1434	1434	3474;3475	3474					0.03481152580627622
ATLTNILEH	9	Unmodified	_ATLTNILEH_					0	0	0		nc|ENSG00000140853|Q86WI3-3|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5	nc|ENSG00000140853|Q86WI3-3|NLRC5	nc|ENSG00000140853|Q86WI3-3|NLRC5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2773132324219	2	506.277106	1010.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.623	1	49.643	49.143	50.143	0.020691								0	0	0	6.276E-11	1	11437	11437		152.89	21.618	1				2751	4340	1434	1434	3476	3476					0.03481152580627622
ATLTTIITMEK	11	Oxidation (M)	_ATLTTIITM(Oxidation (M))EK_		ATLTTIITM(1)EK		ATLTTIITM(140)EK	0	0	1		ENST00000493409.5_1_10:86185579-86185645:+|nuORF	ENST00000493409.5_1_10:86185579-86185645:+|nuORF	ENST00000493409.5_1_10:86185579-86185645:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.3390502929688	2	619.339046	1236.66354	0.34304	0.00021246	-0.081757	-5.0635E-05	0.26128	0.00016182	619.3390238571311	48.918	0.38345	48.918	48.694	49.077	0					25	13	2	0	0	0	1.056E-08	2	11254	11203;11254		142.92	142.92	1	1341800			2752	11201	1435	1435	3477;3478	3478		952			0.05467442565895908
ATLTTIITMEK	11	Oxidation (M)	_ATLTTIITM(Oxidation (M))EK_		ATLTTIITM(1)EK		ATLTTIITM(140)EK	0	0	1		ENST00000493409.5_1_10:86185579-86185645:+|nuORF	ENST00000493409.5_1_10:86185579-86185645:+|nuORF	ENST00000493409.5_1_10:86185579-86185645:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.3392944335938	2	619.339046	1236.66354	0.3913	0.00024235	-0.042915	-2.6579E-05	0.34839	0.00021577	619.3389795183739	49.228	0.90444	49.228	48.721	49.626	0					65	32	3	0	0	0	1.5991E-08	2	11316	11316;11371		135.72	115.06	1	1127300			2753	11201	1435	1435	3479;3480	3479		952			0.05467442565895908
ATLTTIITMEK	11	Oxidation (M)	_ATLTTIITM(Oxidation (M))EK_		ATLTTIITM(1)EK		ATLTTIITM(150)EK	0	0	1		ENST00000493409.5_1_10:86185579-86185645:+|nuORF	ENST00000493409.5_1_10:86185579-86185645:+|nuORF	ENST00000493409.5_1_10:86185579-86185645:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.339111328125	2	619.339046	1236.66354	0.17673	0.00010946	-0.011893	-7.3656E-06	0.16484	0.00010209	619.3391522222616	48.924	0.39184	48.968	48.768	49.16	0.044888					35	13	3	0	0	0	2.1743E-09	2	11223	11223;11272		154.04	119.1	1	1468600			2754	11201	1435	1435	3481;3482	3481		952			0.05467442565895908
ATLTTIITMEK	11	Oxidation (M)	_ATLTTIITM(Oxidation (M))EK_		ATLTTIITM(1)EK		ATLTTIITM(150)EK	0	0	1		ENST00000493409.5_1_10:86185579-86185645:+|nuORF	ENST00000493409.5_1_10:86185579-86185645:+|nuORF	ENST00000493409.5_1_10:86185579-86185645:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.3392944335938	2	619.339046	1236.66354	0.087738	5.434E-05	0.28352	0.0001756	0.37126	0.00022994	619.3392003618029	49.316	0.55997	49.361	49.135	49.695	0.044891					59	20	4	0	0	0	7.7232E-09	2	11322	11322;11369		146.68	128.82	1	1432900			2755	11201	1435	1435	3483;3484	3483		952			0.05467442565895908
ATLTTIITMEK	11	Oxidation (M)	_ATLTTIITM(Oxidation (M))EK_		ATLTTIITM(1)EK		ATLTTIITM(150)EK	0	0	1		ENST00000493409.5_1_10:86185579-86185645:+|nuORF	ENST00000493409.5_1_10:86185579-86185645:+|nuORF	ENST00000493409.5_1_10:86185579-86185645:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.3394165039062	2	619.339046	1236.66354	0.094633	5.861E-05	0.26711	0.00016543	0.36174	0.00022404	619.3392062406933	48.858	0.43703	48.89	48.684	49.121	0.032043					38	15	3	0	0	0	7.7232E-09	2	11194	11194;11253		146.68	104.72	1	1213900			2756	11201	1435	1435	3485;3486	3485		952			0.05467442565895908
ATLTTIITMEK	11	Oxidation (M)	_ATLTTIITM(Oxidation (M))EK_		ATLTTIITM(1)EK		ATLTTIITM(140)EK	0	0	1		ENST00000493409.5_1_10:86185579-86185645:+|nuORF	ENST00000493409.5_1_10:86185579-86185645:+|nuORF	ENST00000493409.5_1_10:86185579-86185645:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.3389892578125	2	619.339046	1236.66354	0.066644	4.1275E-05	0.25861	0.00016017	0.32526	0.00020145	619.339089885419	49.208	0.58291	49.24	49.072	49.655	0.032043					60	20	4	0	0	0	1.5991E-08	2	11304	11304;11353		135.72	125.18	1	1174300			2757	11201	1435	1435	3487;3488	3487		952			0.05467442565895908
ATMAPLQRL	9	Unmodified	_ATMAPLQRL_					0	0	0			REV__nc|ENSG00000177731|Q13045-3|FLII	REV__nc|ENSG00000177731|Q13045-3|FLII	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8293151855469	2	500.784044	999.553536	0.31176	0.00015613	0.36485	0.00018271	0.67661	0.00033883	500.7844464043302	38.262	0.50518	38.359	38.037	38.542	0.097527					29	17	2	0	0	0	0.2322	1	7923	7923		14.838	5.4551	1	263610	+		2758	18003	1436	1436	3489	3489					0.05374106808051238
ATMEDTVEY	9	Oxidation (M)	_ATM(Oxidation (M))EDTVEY_		ATM(1)EDTVEY		ATM(68)EDTVEY	0	0	1		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.717529296875	2	537.71843	1073.42231	-0.69701	-0.0003748	-0.02538	-1.3647E-05	-0.72239	-0.00038844	537.7182928603278	35.067	0.60682	35.067	34.775	35.382	0					55	21	3	0	0	0	0.017391	2	6947	6947;6998		68.081	13.307	1	887340			2759	3076	1437	1437	3490;3491	3490		384			-0.11146793141142552
ATMEDTVEY	9	Oxidation (M)	_ATM(Oxidation (M))EDTVEY_		ATM(1)EDTVEY		ATM(75)EDTVEY	0	0	1		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.718017578125	2	537.71843	1073.42231	-0.79672	-0.00042841	-0.060313	-3.2432E-05	-0.85704	-0.00046084	537.7183854041958	35.003	0.61695	35.078	34.788	35.405	0.075306					47	21	3	0	0	0	0.012929	2	6945	6945;6993		74.929	20.155	1	797900			2760	3076	1437	1437	3492;3493	3492		384			-0.11146793141142552
ATMEDTVEY	9	Oxidation (M)	_ATM(Oxidation (M))EDTVEY_		ATM(1)EDTVEY		ATM(68)EDTVEY	0	0	1		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7180786132812	2	537.71843	1073.42231	-0.52838	-0.00028412	0.013194	7.0944E-06	-0.51519	-0.00027703	537.7183447587947	34.94	0.58059	35.018	34.755	35.336	0.077377					51	20	3	0	0	0	0.017391	2	6917	6917;6966		68.081	19.214	1	815600			2761	3076	1437	1437	3494;3495	3494		384			-0.11146793141142552
ATMEQLTYFL	10	Unmodified	_ATMEQLTYFL_					0	0	0			REV__nc|ENSG00000099834|Q9HBB8-2|CDHR5	REV__nc|ENSG00000099834|Q9HBB8-2|CDHR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5750427246094	3	406.20213	1215.58456	-0.1867	-7.5839E-05	1.9945	0.00081017	1.8078	0.00073433	406.20302591662795	29.22	0.47996	29.234	28.879	29.359	0.013474					20	17	2	0	0	0	0.31942	1	5129	5129		3.5871	1.6807	1	54453	+		2762	14139	1438	1438	3496	3496					-0.014607846683702519
ATMLLGLLV	9	Unmodified	_ATMLLGLLV_					0	0	0		ENSG00000144410|ENST00000272852|CPO	ENSG00000144410|ENST00000272852|CPO	ENSG00000144410|ENST00000272852|CPO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7684020996094	2	465.788264	929.561975	0.35816	0.00016683	0.93297	0.00043457	1.2911	0.00060139	465.78738432557464	78.023	0.27118	78.082	77.955	78.226	0.058151					11	9	2	0	0	0	0.25291	1	20135	20135		9.3474	0	1	46541			2763	4583	1439	1439	3497	3497					0.09437660724699981
ATMLLGLLV	9	Unmodified	_ATMLLGLLV_					0	0	0		ENSG00000144410|ENST00000272852|CPO	ENSG00000144410|ENST00000272852|CPO	ENSG00000144410|ENST00000272852|CPO	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	465.788264	929.561975	0.74327	0.00034621	-0.1263	-5.8829E-05	0.61697	0.00028738	465.7870031870954	77.984	0.13924	77.954	77.87	78.009	-0.030434	-0.063978	-0.00043851	NaN	9.3474	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43758			2764	4583	1439	1439							0.09437660724699981
ATMPKKGIL	9	Unmodified	_ATMPKKGIL_					0	0	0		ENSG00000074590|ENST00000261402|NUAK1	ENSG00000074590|ENST00000261402|NUAK1	ENSG00000074590|ENST00000261402|NUAK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7638244628906	2	479.791338	957.568123	0.044909	2.1547E-05	-2.2444	-0.0010768	-2.1995	-0.0010553	479.79107839673725	19.585	0.66566	19.585	19.267	19.933	0					49	23	3	0	0	0	0.25526	1	2191	2191		7.9102	2.1497	1	44957			2765	1022	1440	1440	3498	3498					0.08764178956209889
ATMPKKGIL	9	Unmodified	_ATMPKKGIL_					0	0	0		ENSG00000074590|ENST00000261402|NUAK1	ENSG00000074590|ENST00000261402|NUAK1	ENSG00000074590|ENST00000261402|NUAK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.791338	957.568123	0.26143	0.00012543	-2.541	-0.0012192	-2.2796	-0.0010937	479.79102632070783	19.771	0.66308	19.655	19.405	20.068	-0.11592	0.0060396	-0.0012098	NaN	7.9102	40	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70709			2766	1022	1440	1440							0.08764178956209889
ATMPKKGILKK	11	Oxidation (M)	_ATM(Oxidation (M))PKKGILKK_		ATM(1)PKKGILKK		ATM(45)PKKGILKK	0	0	1		ENSG00000074590|ENST00000261402|NUAK1	ENSG00000074590|ENST00000261402|NUAK1	ENSG00000074590|ENST00000261402|NUAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.9246826171875	3	410.924931	1229.75296	-0.39093	-0.00016064	0.12473	5.1254E-05	-0.2662	-0.00010939	410.925060085352	13.074	0.32845	13.074	12.925	13.254	0					39	11	5	0	0	0	0.078698	1	307	307		44.945	30.774	1	388650			2767	1022	1441	1441	3499	3499		124			0.14727742035938718
ATMPKKGILKK	11	Oxidation (M)	_ATM(Oxidation (M))PKKGILKK_		ATM(1)PKKGILKK		ATM(42)PKKGILKK	0	0	1		ENSG00000074590|ENST00000261402|NUAK1	ENSG00000074590|ENST00000261402|NUAK1	ENSG00000074590|ENST00000261402|NUAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.9247131347656	3	410.924931	1229.75296	-0.28262	-0.00011613	-0.30728	-0.00012627	-0.5899	-0.0002424	410.9249098752319	13.105	0.6534	13.037	12.734	13.388	-0.067495					59	22	5	0	0	0	0.088648	1	326	326		42.068	29.84	1	379280			2768	1022	1441	1441	3500	3500		124			0.14727742035938718
ATMQSMESLLR	11	2 Oxidation (M)	_ATM(Oxidation (M))QSM(Oxidation (M))ESLLR_		ATM(1)QSM(1)ESLLR		ATM(140)QSM(140)ESLLR	0	0	2		nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8079223632812	2	649.807587	1297.60062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.507	1	30.507	30.007	31.007	0								0	0	0	5.5847E-11	1	5591	5591		136.86	111.87	1				2769	12858	1442	1442	3501	3501		983;984			-0.03627446493737807
ATMQSMESLLR	11	2 Oxidation (M)	_ATM(Oxidation (M))QSM(Oxidation (M))ESLLR_		ATM(1)QSM(1)ESLLR		ATM(130)QSM(130)ESLLR	0	0	2		nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8077392578125	2	649.807587	1297.60062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.674	1	30.674	30.174	31.174	0								0	0	0	1.1004E-10	1	5642	5642		133.12	103.28	1				2770	12858	1442	1442	3502	3502		983;984			-0.03627446493737807
ATMQSMESLLR	11	2 Oxidation (M)	_ATM(Oxidation (M))QSM(Oxidation (M))ESLLR_		ATM(1)QSM(1)ESLLR		ATM(160)QSM(160)ESLLR	0	0	2		nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.80810546875	2	649.807587	1297.60062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.5	1	30.527	30.027	31.027	0.027946								0	0	0	3.7717E-17	1	5589	5589		157.28	129.65	1				2771	12858	1442	1442	3503	3503		983;984			-0.03627446493737807
ATMQSMESLLR	11	2 Oxidation (M)	_ATM(Oxidation (M))QSM(Oxidation (M))ESLLR_		ATM(1)QSM(1)ESLLR		ATM(170)QSM(170)ESLLR	0	0	2		nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.807861328125	2	649.807587	1297.60062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.66	1	30.688	30.188	31.188	0.027946								0	0	0	1.0745E-24	1	5638	5638		168	133.07	1				2772	12858	1442	1442	3504	3504		983;984			-0.03627446493737807
ATMQSMESLLR	11	2 Oxidation (M)	_ATM(Oxidation (M))QSM(Oxidation (M))ESLLR_		ATM(1)QSM(1)ESLLR		ATM(150)QSM(150)ESLLR	0	0	2		nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.807861328125	2	649.807587	1297.60062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.48	1	30.507	30.007	31.007	0.027157								0	0	0	9.6486E-17	1	5578	5578		146.9	119.27	1				2773	12858	1442	1442	3505	3505		983;984			-0.03627446493737807
ATMQSMESLLR	11	2 Oxidation (M)	_ATM(Oxidation (M))QSM(Oxidation (M))ESLLR_		ATM(1)QSM(1)ESLLR		ATM(170)QSM(170)ESLLR	0	0	2		nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8078002929688	2	649.807587	1297.60062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.63	1	30.657	30.157	31.157	0.027157								0	0	0	1.0745E-24	1	5624	5624		168	130.93	1				2774	12858	1442	1442	3506	3506		983;984			-0.03627446493737807
ATMQSMESLLR	11	2 Oxidation (M)	_ATM(Oxidation (M))QSM(Oxidation (M))ESLLR_		ATM(1)QSM(1)ESLLR		ATM(65)QSM(65)ESLLR	0	0	2		nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.80810546875	2	649.807587	1297.60062	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.788	1	30.815	30.315	31.315	0.027157								0	0	0	0.02504	1	5672	5672		64.692	43.101	1				2775	12858	1442	1442	3507	3507		983;984			-0.03627446493737807
ATMYNLLAY	9	Oxidation (M)	_ATM(Oxidation (M))YNLLAY_		ATM(1)YNLLAY		ATM(85)YNLLAY	0	0	1		ENSG00000119917|ENST00000371818|IFIT3;IFIT3|p.F457Sfs*33|1|0.36|ENSG00000119917|chr10:89340022-89340022|T/-|frameshift_variant;IFIT3|p.G98Efs*20|1|0.27|ENSG00000119917|chr10:89338945-89338945|G/-|frameshift_variant	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2599487304688	2	538.260068	1074.50558	0.39662	0.00021348	-0.35606	-0.00019165	0.04056	2.1832E-05	538.2597131583686	65.392	0.77346	65.392	65.047	65.821	0					80	27	5	0	0	0	0.006189	1	16323	16323		85.272	26.593	1	2330500			2776	2915	1443	1443	3508	3508		366			-0.02869011902657803
ATMYNLLAY	9	Oxidation (M)	_ATM(Oxidation (M))YNLLAY_		ATM(1)YNLLAY		ATM(85)YNLLAY	0	0	1		ENSG00000119917|ENST00000371818|IFIT3;IFIT3|p.F457Sfs*33|1|0.36|ENSG00000119917|chr10:89340022-89340022|T/-|frameshift_variant;IFIT3|p.G98Efs*20|1|0.27|ENSG00000119917|chr10:89338945-89338945|G/-|frameshift_variant	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.260009765625	2	538.260068	1074.50558	-0.018918	-1.0183E-05	0.11308	6.0867E-05	0.094164	5.0685E-05	538.2599964913735	65.287	0.67137	65.376	65.06	65.732	0.088882					76	24	4	0	0	0	0.006189	1	16292	16292		85.272	26.593	1	2365600			2777	2915	1443	1443	3509	3509		366			-0.02869011902657803
ATMYNLLAY	9	Oxidation (M)	_ATM(Oxidation (M))YNLLAY_		ATM(1)YNLLAY		ATM(78)YNLLAY	0	0	1		ENSG00000119917|ENST00000371818|IFIT3;IFIT3|p.F457Sfs*33|1|0.36|ENSG00000119917|chr10:89340022-89340022|T/-|frameshift_variant;IFIT3|p.G98Efs*20|1|0.27|ENSG00000119917|chr10:89338945-89338945|G/-|frameshift_variant	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.8316040039062	2	538.260068	1074.50558	0.40895	0.00022012	-0.26539	-0.00014285	0.14356	7.7274E-05	538.2597732104041	65.383	0.72504	65.371	65.074	65.799	-0.01133					77	26	4	0	0	0	0.030157	1	16312	16312		78.149	23.376	1	2497500			2778	2915	1443	1443	3510	3510		366			-0.02869011902657803
ATNAAVTVLR	10	Unmodified	_ATNAAVTVLR_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7818908691406	2	508.298373	1014.58219	0.55386	0.00028153	4.0725	0.0020701	4.6264	0.0023516	508.8028240074418	33.71	0.32703	33.71	33.538	33.865	0					17	11	2	0	0	0	0.31433	1	6600	6600		14.957	4.8832	1	62125			2779	5228	1444	1444	3511	3511					0.07548547708847764
ATNASVFKY	9	Unmodified	_ATNASVFKY_					0	0	0		ENSG00000266028|ENST00000573034|SRGAP2;nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;ENST00000542381.1_1_12:64436587-64437364:+|nuORF;ENST00000483628.1_1:206566231-206579954:+|nuORF;SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant;ENSG00000196935|ENST00000355086|SRGAP1;SRGAP1|p.E394Rfs*4|1|0.24|ENSG00000196935|chr12:64078971-64078972|-/C|frameshift_variant;ENST00000537556.1_1_12:64238596-64474299:+|nuORF;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1	ENSG00000266028|ENST00000573034|SRGAP2;SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant	ENSG00000266028|ENST00000573034|SRGAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8293762207031	2	500.758549	999.502546	0.21304	0.00010668	0.34533	0.00017293	0.55837	0.00027961	500.75870249510444	38.354	0.47898	38.354	38.118	38.597	0					37	16	3	0	0	0	0.094714	1	7964	7964		59.052	26.747	1	429730			2780	8674;7914	1445	1445	3512	3512					0.00277481034856919
ATNASVFKY	9	Unmodified	_ATNASVFKY_					0	0	0		ENSG00000266028|ENST00000573034|SRGAP2;nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;ENST00000542381.1_1_12:64436587-64437364:+|nuORF;ENST00000483628.1_1:206566231-206579954:+|nuORF;SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant;ENSG00000196935|ENST00000355086|SRGAP1;SRGAP1|p.E394Rfs*4|1|0.24|ENSG00000196935|chr12:64078971-64078972|-/C|frameshift_variant;ENST00000537556.1_1_12:64238596-64474299:+|nuORF;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1	ENSG00000266028|ENST00000573034|SRGAP2;SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant	ENSG00000266028|ENST00000573034|SRGAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8293762207031	2	500.758549	999.502546	0.41094	0.00020578	0.0098293	4.9221E-06	0.42077	0.00021071	500.7586001146414	38.25	0.71572	38.341	38.042	38.758	0.090881					38	25	2	0	0	0	0.074421	1	7947	7947		67.081	27.123	1	481340			2781	8674;7914	1445	1445	3513	3513					0.00277481034856919
ATNASVFKY	9	Unmodified	_ATNASVFKY_					0	0	0		ENSG00000266028|ENST00000573034|SRGAP2;nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C;ENST00000542381.1_1_12:64436587-64437364:+|nuORF;ENST00000483628.1_1:206566231-206579954:+|nuORF;SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant;ENSG00000196935|ENST00000355086|SRGAP1;SRGAP1|p.E394Rfs*4|1|0.24|ENSG00000196935|chr12:64078971-64078972|-/C|frameshift_variant;ENST00000537556.1_1_12:64238596-64474299:+|nuORF;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1	ENSG00000266028|ENST00000573034|SRGAP2;SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant	ENSG00000266028|ENST00000573034|SRGAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8293151855469	2	500.758549	999.502546	0.31901	0.00015975	0.23497	0.00011766	0.55398	0.00027741	500.75856961449114	38.211	0.55922	38.309	38.037	38.596	0.097527					47	19	3	0	0	0	0.052657	1	7923	7923		67.081	32.978	1	386080			2782	8674;7914	1445	1445	3514	3514					0.00277481034856919
ATNDSVVADK	10	Unmodified	_ATNDSVVADK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2540283203125	2	510.253828	1018.4931	0.19907	0.00010158	0.067207	3.4293E-05	0.26628	0.00013587	510.25388705136845	16.375	0.77473	16.375	16.093	16.867	0					76	26	4	0	0	0	2.7242E-05	2	1333	1281;1333		139.98	94.242	1	744040			2783	8278	1446	1446	3515;3516	3516					-0.015403320413270194
ATNDSVVADK	10	Unmodified	_ATNDSVVADK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2540588378906	2	510.253828	1018.4931	0.068238	3.4819E-05	0.19728	0.00010066	0.26552	0.00013548	510.253951888607	16.499	0.69167	16.385	16.139	16.831	-0.11434					73	24	4	0	0	0	1.5767E-08	2	1363	1321;1363		160.81	105.31	1	797710			2784	8278	1446	1446	3517;3518	3518					-0.015403320413270194
ATNDSVVADK	10	Unmodified	_ATNDSVVADK_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.25396728515625	2	510.253828	1018.4931	0.20309	0.00010363	0.090505	4.618E-05	0.29359	0.00014981	510.25387083918645	16.398	0.79386	16.335	16.121	16.915	-0.062534					77	27	4	0	0	0	1.0786E-05	2	1301	1301;1352		150.22	100.67	1	855100			2785	8278	1446	1446	3519;3520	3519					-0.015403320413270194
ATNGPPVLVK	10	Unmodified	_ATNGPPVLVK_					0	0	0		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENST00000481999.1_1_17:7813558-7814900:+|nuORF;ENST00000470531.5_3_17:7807732-7814900:+|nuORF;ENST00000439235.5_1_17:7812698-7814900:+|nuORF	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.75909423828125	2	498.297842	994.581131	0.87949	0.00043825	-2.4978	-0.0012447	-1.6184	-0.00080642	498.29831416154735	33.662	0.68705	33.728	33.405	34.092	0.06636					53	24	3	0	0	0	0.30555	1	6546	6546		15.248	11.304	1	172950			2786	6414	1447	1447	3521	3521					0.08362333339937322
ATNGVLHIL	9	Unmodified	_ATNGVLHIL_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.27691650390625	2	469.276909	936.539266	-0.0050503	-2.37E-06	0.46728	0.00021928	0.46223	0.00021691	469.27699312830197	52.006	0.62395	52.006	51.759	52.382	0					51	22	3	0	0	0	1.5552E-11	2	12153	12153;12197		198.25	0	1	2013600			2787	423	1448	1448	3522;3523	3522					0.06845777651415119
ATNGVLHIL	9	Unmodified	_ATNGVLHIL_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.277099609375	2	469.276909	936.539266	0.13886	6.5162E-05	0.39142	0.00018368	0.53027	0.00024884	469.2769568736093	51.967	0.66042	52.017	51.729	52.389	0.050575					59	23	5	0	0	0	1.0663E-16	1	12150	12150		214.41	0	1	2055300			2788	423	1448	1448	3524	3524					0.06845777651415119
ATNGVLHIL	9	Unmodified	_ATNGVLHIL_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.2769775390625	2	469.276909	936.539266	0.004428	2.0779E-06	0.43346	0.00020341	0.43789	0.00020549	469.27698671250306	52.086	0.62149	52.085	51.819	52.44	-0.00080872					57	22	3	0	0	0	1.0663E-16	2	12218	12172;12218		214.41	0	1	2080800			2789	423	1448	1448	3525;3526	3526					0.06845777651415119
ATNLSALYY	9	Unmodified	_ATNLSALYY_					0	0	0		ENST00000461115.5_1_13:21189938-21205265:+|nuORF;ENST00000482172.5_1_13:21189938-21228047:+|nuORF;nc|ENSG00000032742|Q13099-3|IFT88;ENSG00000032742|ENST00000351808|IFT88;nc|ENSG00000032742|Q13099-1|IFT88	ENST00000461115.5_1_13:21189938-21205265:+|nuORF	ENST00000461115.5_1_13:21189938-21205265:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.79833984375	2	508.258382	1014.50221	0.73086	0.00037147	0.019615	9.9694E-06	0.75048	0.00038144	508.2581607203055	60.816	0.29222	60.807	60.546	60.838	-0.0094566					14	10	2	0	0	0	0.19686	1	14855	14855		31.268	2.1868	1	140040			2790	556	1449	1449	3527	3527					-0.004459386850044211
ATNPISRVL	9	Unmodified	_ATNPISRVL_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80010986328125	2	485.787641	969.56073	0.069111	3.3573E-05	0.50194	0.00024384	0.57106	0.00027741	485.78768467165855	46.549	0.80932	46.549	46.003	46.813	0					65	29	3	0	0	0	0.12765	2	10481	10481;10531		34.222	9.2307	1	605120			2791	2170	1450	1450	3528;3529	3528					0.07473162680150836
ATNPISRVL	9	Unmodified	_ATNPISRVL_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7998352050781	2	485.787641	969.56073	0.21636	0.00010511	0.26747	0.00012993	0.48383	0.00023504	485.78757127383744	46.337	1.1454	46.397	45.734	46.879	0.059834					68	41	2	0	0	0	0.12765	2	10408	10408;10453		34.222	10.432	1	802440			2792	2170	1450	1450	3530;3531	3530					0.07473162680150836
ATNPISRVL	9	Unmodified	_ATNPISRVL_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7999267578125	2	485.787641	969.56073	0.17697	8.5972E-05	0.38667	0.00018784	0.56364	0.00027381	485.7876906742752	46.513	0.99739	46.568	45.83	46.827	0.054371					60	35	2	0	0	0	0.13296	2	10411	10411;10462		33.445	8.0456	1	537040			2793	2170	1450	1450	3532;3533	3532					0.07473162680150836
ATNSSMFLK	9	Oxidation (M)	_ATNSSM(Oxidation (M))FLK_		ATNSSM(1)FLK		ATNSSM(72)FLK	0	0	1		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7495422363281	2	507.749867	1013.48518	0.1831	9.2968E-05	-0.45334	-0.00023018	-0.27024	-0.00013722	507.7495792472371	27.292	0.58153	27.292	26.979	27.561	0					36	19	3	0	0	0	0.015027	1	4613	4613		71.708	35.581	1	181240			2794	5853	1451	1451	3534	3534		693			-0.021021825624302437
ATNSSMFLK	9	Oxidation (M)	_ATNSSM(Oxidation (M))FLK_		ATNSSM(1)FLK		ATNSSM(57)FLK	0	0	1		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7493896484375	2	507.749867	1013.48518	0.089768	4.558E-05	0.046545	2.3633E-05	0.13631	6.9213E-05	507.7498072204145	27.319	0.65244	27.297	27.015	27.667	-0.021412					45	22	3	0	0	0	0.038291	1	4614	4614		57.249	34.513	1	246840			2795	5853	1451	1451	3535	3535		693			-0.021021825624302437
ATNSSMFLK	9	Oxidation (M)	_ATNSSM(Oxidation (M))FLK_		ATNSSM(1)FLK		ATNSSM(50)FLK	0	0	1		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.74981689453125	2	507.749867	1013.48518	0.12486	6.3398E-05	-0.093716	-4.7584E-05	0.031146	1.5814E-05	507.7497830517445	27.297	0.60356	27.286	27.042	27.645	-0.01156					34	20	2	0	0	0	0.059067	1	4631	4631		49.527	26.791	1	219100			2796	5853	1451	1451	3536	3536		693			-0.021021825624302437
ATNTSAPDLK	10	Unmodified	_ATNTSAPDLK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2640380859375	2	509.264196	1016.51384	0.35982	0.00018324	-0.24008	-0.00012226	0.11974	6.0977E-05	509.26401931827917	21.447	0.90845	21.447	21.108	22.017	0					88	32	4	0	0	0	1.1034E-05	4	2844	2795;2844;2887;2936		150.06	80.727	1	1361700			2797	638	1452	1452	3537;3538;3539;3540	3538					0.006242583383141209
ATNTSAPDLK	10	Unmodified	_ATNTSAPDLK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.26422119140625	2	509.264196	1016.51384	0.39823	0.0002028	-0.20409	-0.00010393	0.19414	9.8868E-05	509.2640123333418	21.553	1.1021	21.453	21.13	22.233	-0.10034					106	39	5	0	0	0	6.4242E-09	4	2881	2838;2881;2923;2956		172.26	91.586	1	1616000			2798	638	1452	1452	3541;3542;3543;3544	3542					0.006242583383141209
ATNTSAPDLK	10	Unmodified	_ATNTSAPDLK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.26409912109375	2	509.264196	1016.51384	0.27892	0.00014204	-0.087113	-4.4363E-05	0.1918	9.7679E-05	509.26409645709583	21.476	0.99832	21.427	21.066	22.064	-0.049377					95	35	4	0	0	0	1.1034E-05	3	2858	2813;2858;2901		150.06	72.004	1	1500800			2799	638	1452	1452	3545;3546;3547	3546					0.006242583383141209
ATNTVYVFAK	10	Unmodified	_ATNTVYVFAK_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.300537109375	2	557.300581	1112.58661	0.27938	0.0001557	0.13519	7.5344E-05	0.41457	0.00023104	557.300588158693	41.794	0.49257	41.794	41.62	42.113	0					47	21	3	0	0	0	0.0042491	1	9013	9013		96.034	57.859	1	3414400			2800	628	1453	1453	3548	3548					0.03482012131757983
ATNTVYVFAK	10	Unmodified	_ATNTVYVFAK_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7749633789062	2	557.300581	1112.58661	0.32381	0.00018046	0.51951	0.00028953	0.84332	0.00046999	557.300837209101	41.661	0.61947	41.752	41.539	42.158	0.090252					36	26	2	0	0	0	0.00014312	1	8971	8971		135.72	91.86	1	3014400			2801	628	1453	1453	3549	3549					0.03482012131757983
ATNTVYVFAK	10	Unmodified	_ATNTVYVFAK_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.30078125	2	557.300581	1112.58661	0.53062	0.00029571	0.35824	0.00019965	0.88886	0.00049536	557.3007493161185	41.527	0.45356	41.624	41.448	41.901	0.096626					31	19	2	0	0	0	2.8304E-05	1	8942	8942		139.32	101.15	1	3168600			2802	628	1453	1453	3550	3550					0.03482012131757983
ATNYGEDLTK	10	Unmodified	_ATNYGEDLTK_					0	0	0		ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1	ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.1939086914062	2	556.266936	1110.51932	0.34196	0.00019022	0.39037	0.00021715	0.73233	0.00040737	556.2668410088221	29.196	0.33618	29.208	29.053	29.389	0.012266					25	11	4	0	0	0	0.31497	1	5191	5191		14.218	7.495	1	156920			2803	650	1454	1454	3551	3551					-0.031520628698672226
ATNYGEDLTK	10	Unmodified	_ATNYGEDLTK_					0	0	0		ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1	ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	556.266936	1110.51932	0.51424	0.00028606	0.29568	0.00016448	0.80992	0.00045053	556.2669992600822	29.199	0.48584	29.199	29.006	29.492	0	-0.023779	-0.0001697	NaN	14.218	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147910			2804	650	1454	1454							-0.031520628698672226
ATNYGEDLTK	10	Unmodified	_ATNYGEDLTK_					0	0	0		ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1	ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	556.266936	1110.51932	0.10456	5.8163E-05	0.8314	0.00046248	0.93595	0.00052064	556.2672295326926	29.247	0.44735	29.261	29.033	29.481	0.013474	0.038251	0.00042631	NaN	14.218	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141620			2805	650	1454	1454							-0.031520628698672226
ATPEEFFL	8	Unmodified	_ATPEEFFL_					0	0	0		nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF;ENSG00000039650|ENST00000322344|PNKP;ENST00000594661.5_1_19:50364507-50367546:-|nuORF;ENST00000593706.3_1_19:50365412-50367307:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP	nc|ENSG00000039650|Q96T60-2|PNKP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.94158935546875	2	477.234376	952.454199	0.04809	2.295E-05	-0.38101	-0.00018183	-0.33292	-0.00015888	477.23424526820713	25.142	0.37152	25.086	25.023	25.395	-0.055931					17	12	2	0	0	0	0.34337	1	4050	4050		5.2307	0.47466	1	45763			2806	599	1455	1455	3552	3552					-0.023930126050458966
ATPEKSLHDK	10	Unmodified	_ATPEKSLHDK_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.298095703125	2	563.29857	1124.58259	-0.16935	-9.5393E-05	0.16433	9.2568E-05	-0.0050139	-2.8243E-06	563.2984175518036	12.736	0.52684	12.668	12.52	13.047	-0.067495					20	17	2	0	0	0	0.32101	1	217	217		2.4985	0.84587	1	58680			2807	1077	1456	1456	3553	3553					0.02527922638023483
ATPEKSLHDK	10	Unmodified	_ATPEKSLHDK_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.29857	1124.58259	-0.072672	-4.0936E-05	-0.30535	-0.000172	-0.37802	-0.00021294	563.2982197696527	12.702	0.45107	12.702	12.526	12.977	0	0.032957	-0.00043028	NaN	2.4985	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70533			2808	1077	1456	1456							0.02527922638023483
ATPEKSLHDK	10	Unmodified	_ATPEKSLHDK_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	563.29857	1124.58259	0.060819	3.4259E-05	0.2046	0.00011525	0.26541	0.00014951	563.298493296664	12.737	0.32333	12.638	12.49	12.814	-0.099291	-0.03172	0.00014423	NaN	2.4985	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63557			2809	1077	1456	1456							0.02527922638023483
ATPENPTIRK	10	Unmodified	_ATPENPTIRK_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.8146362304688	2	563.814387	1125.61422	0.097881	5.5187E-05	-0.13592	-7.6631E-05	-0.038034	-2.1444E-05	563.8146530462062	17.97	0.46646	17.91	17.618	18.084	-0.060429					34	16	3	0	0	0	0.40532	1	1781	1781		2.4985	1.0166	1	40213			2810	4132	1457	1457	3554	3554					0.056439153920109675
ATPENPTIRK	10	Unmodified	_ATPENPTIRK_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.814387	1125.61422	0.20211	0.00011395	-0.215	-0.00012122	-0.01289	-7.2678E-06	563.8147018120807	17.753	0.45575	17.753	17.568	18.024	0	-0.066205	-0.00012418	NaN	2.4985	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48014			2811	4132	1457	1457							0.056439153920109675
ATPENPTIRK	10	Unmodified	_ATPENPTIRK_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	563.814387	1125.61422	0.17693	9.9758E-05	-0.018674	-1.0529E-05	0.15826	8.9229E-05	563.8146709328579	17.913	0.38228	17.795	17.603	17.985	-0.11739	-0.024057	9.7201E-05	NaN	2.4985	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59429			2812	4132	1457	1457							0.056439153920109675
ATPIGDLIVL	10	Unmodified	_ATPIGDLIVL_					0	0	0			REV__ENSG00000107554|ENST00000324109|DNMBP	REV__ENSG00000107554|ENST00000324109|DNMBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8416442871094	2	506.307875	1010.6012	0.36892	0.00018679	-1.1936	-0.00060435	-0.82472	-0.00041756	506.3071508301789	68.519	0.53654	68.519	68.275	68.812	0					36	19	2	0	0	0	0.31629	1	17296	17296		6.2058	0	1	411030	+		2813	14555	1458	1458	3555	3555					0.0963208427989457
ATPIQQPA	8	Unmodified	_ATPIQQPA_					0	0	0		ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	ENSG00000052841|ENST00000039989|TTC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2268981933594	2	413.226885	824.439217	-0.12112	-5.0052E-05	0.00050691	2.0947E-07	-0.12062	-4.9842E-05	413.22684318770104	14.35	1.6202	14.284	13.802	15.422	-0.066068					175	56	5	0	0	0	0.42758	1	665	665		13.508	1.8676	1	1561400			2814	675	1459	1459	3556	3556					0.019975403176090367
ATPKKTVPK	9	Unmodified	_ATPKKTVPK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.3080139160156	2	485.30821	968.601866	-0.12115	-5.8795E-05	-0.2436	-0.00011822	-0.36475	-0.00017702	485.3084148049104	12.159	0.62228	12.159	12.018	12.641	0					55	23	3	0	0	0	0.017549	1	35	35		67.838	31.711	1	2968000			2815	6042	1460	1460	3557	3557					0.11630923719621933
ATPKKTVPK	9	Unmodified	_ATPKKTVPK_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.3080749511719	2	485.30821	968.601866	-0.15367	-7.4577E-05	-0.0038616	-1.874E-06	-0.15753	-7.6451E-05	485.30846113016463	12.16	0.69635	12.091	11.943	12.64	-0.06806					51	27	2	0	0	0	0.064268	2	31	31;80		47.594	24.858	1	2927800			2816	6042	1460	1460	3558;3559	3558					0.11630923719621933
ATPKSDLINKK	11	Unmodified	_ATPKSDLINKK_					0	0	0			REV__ENSG00000110880|ENST00000261401|CORO1C	REV__ENSG00000110880|ENST00000261401|CORO1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.5750732421875	3	405.574955	1213.70304	-0.048807	-1.9795E-05	0.29793	0.00012083	0.24912	0.00010104	405.57507900681924	28.855	0.83505	28.855	28.578	29.413	0					89	29	4	0	0	0	0.33432	1	5099	5099		19.144	0	1	1509800	+		2817	14689	1461	1461	3560	3560					0.10473330631657518
ATPKSDLINKK	11	Unmodified	_ATPKSDLINKK_					0	0	0			REV__ENSG00000110880|ENST00000261401|CORO1C	REV__ENSG00000110880|ENST00000261401|CORO1C	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	405.574955	1213.70304	-0.15166	-6.1509E-05	0.38756	0.00015718	0.2359	9.5675E-05	405.5751294447825	28.784	0.90518	28.78	28.467	29.372	-0.0042572	-0.036641	-1.8201E-05	NaN	19.144	91	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1711300	+		2818	14689	1461	1461							0.10473330631657518
ATPKSDLINKK	11	Unmodified	_ATPKSDLINKK_					0	0	0			REV__ENSG00000110880|ENST00000261401|CORO1C	REV__ENSG00000110880|ENST00000261401|CORO1C	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.574955	1213.70304	-0.24128	-9.7858E-05	0.54464	0.00022089	0.30335	0.00012303	405.575162677612	28.814	0.79191	28.814	28.524	29.316	0.0004673	-0.0023096	0.00017292	NaN	19.144	84	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1745100	+		2819	14689	1461	1461							0.10473330631657518
ATPLDRELS	9	Unmodified	_ATPLDRELS_					0	0	0		ENSG00000150394|ENST00000577390|CDH8	ENSG00000150394|ENST00000577390|CDH8	ENSG00000150394|ENST00000577390|CDH8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.76422119140625	2	501.266739	1000.51892	0.25551	0.00012808	-2.6134	-0.00131	-2.3579	-0.0011819	501.2663060282658	23.732	1.2348	23.66	23.092	24.327	-0.072559					104	42	4	0	0	0	0.28674	1	3636	3636		10.824	1.4408	1	562550			2820	4907	1462	1462	3561	3561					0.01868562200957058
ATPLMLMDTWL	11	Unmodified	_ATPLMLMDTWL_					0	0	0		ENST00000374264.6_1_9:114820802-114820910:-|nuORF	ENST00000374264.6_1_9:114820802-114820910:-|nuORF	ENST00000374264.6_1_9:114820802-114820910:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.2191162109375	3	431.219015	1290.63522	0.16172	6.9738E-05	-0.2116	-9.1246E-05	-0.049877	-2.1508E-05	431.2188951917049	39.971	0.92096	40.064	39.69	40.611	0.09267					105	32	4	0	0	0	0.34542	2	8499	8448;8499		10.315	1.0715	1	2211100			2821	9889	1463	1463	3562;3563	3563					0.0015242138499615976
ATPPASPGK	9	Unmodified	_ATPPASPGK_					0	0	0		ENST00000307826.4_1_5:180219808-180219955:-|nuORF	ENST00000307826.4_1_5:180219808-180219955:-|nuORF	ENST00000307826.4_1_5:180219808-180219955:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2267761230469	2	413.226885	824.439217	-0.34575	-0.00014287	0.23262	9.6124E-05	-0.11313	-4.6747E-05	413.22693508593534	14.259	1.5973	14.259	13.847	15.445	0					160	55	4	0	0	0	0.29638	1	735	735		9.3831	0.63772	1	1678900			2822	9280	1464	1464	3564	3564					0.019975403176204054
ATPPASPGK	9	Unmodified	_ATPPASPGK_					0	0	0		ENST00000307826.4_1_5:180219808-180219955:-|nuORF	ENST00000307826.4_1_5:180219808-180219955:-|nuORF	ENST00000307826.4_1_5:180219808-180219955:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2268981933594	2	413.226885	824.439217	-0.045396	-1.8759E-05	-0.055372	-2.2881E-05	-0.10077	-4.164E-05	413.2268284255644	14.326	1.6797	14.222	13.79	15.469	-0.10466					167	58	4	0	0	0	0.26612	2	706	706;752		13.906	0.63772	1	1827200			2823	9280	1464	1464	3565;3566	3565					0.019975403176204054
ATPPPRLPA	9	Unmodified	_ATPPPRLPA_					0	0	0			REV__ENST00000601048.5_2_19:48281862-48283988:+|nuORF	REV__ENST00000601048.5_2_19:48281862-48283988:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.3115234375	2	460.271627	918.528701	0.51591	0.00023746	-0.85241	-0.00039234	-0.3365	-0.00015488	460.27132315315214	36.802	0.48452	36.895	36.602	37.086	0.093018					21	17	2	0	0	0	0.24848	1	7494	7494		5.7319	0	1	90810	+		2824	22631	1465	1465	3567	3567					0.06617794996986959
ATPRLILLELM	11	Unmodified	_ATPRLILLELM_					0	0	0		ENST00000563518.5_1_15:41796702-41799561:-|nuORF;nc|ENSG00000062524|P29376-5|LTK;nc|ENSG00000062524|P29376-4|LTK;ENSG00000062524|ENST00000263800|LTK	ENST00000563518.5_1_15:41796702-41799561:-|nuORF	ENST00000563518.5_1_15:41796702-41799561:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	635.7731323242188	2	635.383591	1268.75263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.775	1	92.776	92.276	93.276	0.00046539								0	0	0	0.38114	1	24683	24683		1.3295	0.13619	1				2825	766	1466	1466	3568	3568					0.12900322316113488
ATPSPHFYSCR	11	Unmodified	_ATPSPHFYSCR_					0	0	0		ENSG00000162641|ENST00000370001|AKNAD1;ENST00000466413.1_1_1:109358795-109359852:-|nuORF	ENSG00000162641|ENST00000370001|AKNAD1	ENSG00000162641|ENST00000370001|AKNAD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.24053955078125	3	422.52924	1264.56589	-0.22477	-9.4973E-05	-0.80578	-0.00034046	-1.0305	-0.00043544	422.52914010012756	26.013	0.1691	25.974	25.931	26.1	-0.038671					7	5	2	0	0	0	0.33175	1	4238	4238		2.2527	0.51045	1	40016			2826	5592	1467	1467	3569	3569					-0.055809015195563916
ATPTALGLSCP	11	Unmodified	_ATPTALGLSCP_					0	0	0			REV__nc|ENSG00000165240|Q04656-3|ATP7A	REV__nc|ENSG00000165240|Q04656-3|ATP7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2507934570312	2	515.765517	1029.51648	0.32497	0.00016761	1.2747	0.00065743	1.5996	0.00082504	515.7684838474428	43.034	0.080208	43.034	42.982	43.062	0					4	2	2	0	0	0	0.31791	1	9413	9413		20.415	7.883	1	66582	+		2827	23071	1468	1468	3570	3570					0.0029039047165042575
ATPTSPIRVK	10	Unmodified	_ATPTSPIRVK_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.322021484375	2	535.321848	1068.62914	0.35966	0.00019253	0.097233	5.2051E-05	0.45689	0.00024459	535.3218522752474	26.285	1.1088	26.285	25.955	27.063	0					101	38	4	0	0	0	0.0082636	3	4308	4262;4308;4362		84.522	49.59	1	1247200			2828	7913	1469	1469	3571;3572;3573	3572					0.09757407259962747
ATPTSPIRVK	10	Unmodified	_ATPTSPIRVK_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.322021484375	2	535.321848	1068.62914	0.18103	9.691E-05	0.15248	8.1627E-05	0.33352	0.00017854	535.3218732210061	26.28	0.97698	26.242	25.902	26.879	-0.038671					86	34	4	0	0	0	0.0082636	3	4320	4271;4320;4368		84.522	49.59	1	1364000			2829	7913	1469	1469	3574;3575;3576	3575					0.09757407259962747
ATPTSPIRVK	10	Unmodified	_ATPTSPIRVK_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.322021484375	2	535.321848	1068.62914	0.49088	0.00026278	-0.099082	-5.3041E-05	0.3918	0.00020974	535.3217264171614	26.317	0.99443	26.295	25.923	26.918	-0.022238					83	35	4	0	0	0	0.024262	3	4314	4268;4314;4367		67.081	44.344	1	1224100			2830	7913	1469	1469	3577;3578;3579	3578					0.09757407259962747
ATPYYGHQRK	10	Unmodified	_ATPYYGHQRK_					0	0	0			REV__ENST00000335997.11_1_X:129215281-129215380:-|nuORF	REV__ENST00000335997.11_1_X:129215281-129215380:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.2262268066406	3	407.543878	1219.60981	-0.10374	-4.2277E-05	-0.40812	-0.00016633	-0.51185	-0.0002086	407.54381153789905	24.743	1.3473	24.743	24.367	25.714	0					174	45	6	0	0	0	0.35624	2	3781	3781;3920		11.518	1.0308	1	2506400	+		2831	20068	1470	1470	3580;3581	3580					0.008784509690713094
ATPYYGHQRK	10	Unmodified	_ATPYYGHQRK_					0	0	0			REV__ENST00000335997.11_1_X:129215281-129215380:-|nuORF	REV__ENST00000335997.11_1_X:129215281-129215380:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.22625732421875	3	407.543878	1219.60981	-0.11425	-4.6561E-05	-0.16971	-6.9164E-05	-0.28396	-0.00011572	407.543865521179	24.854	1.3357	24.798	24.46	25.796	-0.055931					152	46	4	0	0	0	0.35624	2	3952	3824;3952		11.518	3.1928	1	2989400	+		2832	20068	1470	1470	3582;3583	3583					0.008784509690713094
ATPYYGHQRK	10	Unmodified	_ATPYYGHQRK_					0	0	0			REV__ENST00000335997.11_1_X:129215281-129215380:-|nuORF	REV__ENST00000335997.11_1_X:129215281-129215380:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.22625732421875	3	407.543878	1219.60981	-0.30416	-0.00012396	-0.063327	-2.5808E-05	-0.36748	-0.00014977	407.54393509005547	24.798	1.3681	24.767	24.456	25.824	-0.031408					178	47	5	0	0	0	0.35624	3	3820	3820;3939;3989		11.518	4.8944	1	2817900	+		2833	20068	1470	1470	3584;3585;3586	3584					0.008784509690713094
ATQAVFQKR	9	Unmodified	_ATQAVFQKR_					0	0	0		ENSG00000100949|ENST00000216840|RABGGTA;ENST00000558534.5_1_14:24738716-24740321:-|nuORF;ENST00000560998.5_1_14:24737570-24740321:-|nuORF	ENSG00000100949|ENST00000216840|RABGGTA	ENSG00000100949|ENST00000216840|RABGGTA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.79833984375	2	524.79854	1047.58253	0.48008	0.00025194	-0.39846	-0.00020911	0.081614	4.2831E-05	524.7982274356041	17.339	0.53344	17.339	17.186	17.719	0					43	18	3	0	0	0	0.12279	1	1624	1624		34.932	22.691	1	203860			2834	1649	1471	1471	3587	3587					0.06063967428713113
ATQAVFQKR	9	Unmodified	_ATQAVFQKR_					0	0	0		ENSG00000100949|ENST00000216840|RABGGTA;ENST00000558534.5_1_14:24738716-24740321:-|nuORF;ENST00000560998.5_1_14:24737570-24740321:-|nuORF	ENSG00000100949|ENST00000216840|RABGGTA	ENSG00000100949|ENST00000216840|RABGGTA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7984619140625	2	524.79854	1047.58253	0.27325	0.0001434	-0.16334	-8.5719E-05	0.10991	5.768E-05	524.7983666001538	17.542	0.55585	17.425	17.201	17.757	-0.11739					40	18	3	0	0	0	0.017549	2	1644	1644;1688		67.838	51.991	1	196630			2835	1649	1471	1471	3588;3589	3588					0.06063967428713113
ATQAVFQKR	9	Unmodified	_ATQAVFQKR_					0	0	0		ENSG00000100949|ENST00000216840|RABGGTA;ENST00000558534.5_1_14:24738716-24740321:-|nuORF;ENST00000560998.5_1_14:24737570-24740321:-|nuORF	ENSG00000100949|ENST00000216840|RABGGTA	ENSG00000100949|ENST00000216840|RABGGTA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.798583984375	2	524.79854	1047.58253	0.48175	0.00025282	-0.36416	-0.00019111	0.11759	6.1711E-05	524.798255805599	17.469	0.6374	17.409	17.18	17.817	-0.060429					55	21	4	0	0	0	0.069258	2	1640	1640;1692		45.74	34.245	1	188360			2836	1649	1471	1471	3590;3591	3590					0.06063967428713113
ATQGATEIVK	10	Unmodified	_ATQGATEIVK_					0	0	0		ENSG00000104321|ENST00000262209|TRPA1	ENSG00000104321|ENST00000262209|TRPA1	ENSG00000104321|ENST00000262209|TRPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2823486328125	2	509.282389	1016.55022	0.094706	4.8232E-05	-0.045009	-2.2922E-05	0.049697	2.531E-05	509.28231475475786	22.798	1.1409	22.798	22.476	23.616	0					60	39	3	0	0	0	0.050002	1	3276	3276		59.013	26.975	1	319100			2837	1880	1472	1472	3592	3592					0.04261135235049096
ATQGATEIVK	10	Unmodified	_ATQGATEIVK_					0	0	0		ENSG00000104321|ENST00000262209|TRPA1	ENSG00000104321|ENST00000262209|TRPA1	ENSG00000104321|ENST00000262209|TRPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.28228759765625	2	509.282389	1016.55022	0.062835	3.2001E-05	-0.030612	-1.559E-05	0.032222	1.641E-05	509.28232260785427	22.86	1.0644	22.773	22.484	23.548	-0.087608					62	37	4	0	0	0	0.002652	2	3266	3266;3317		105.35	55.791	1	334990			2838	1880	1472	1472	3593;3594	3593					0.04261135235049096
ATQGNSFFV	9	Unmodified	_ATQGNSFFV_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2852783203125	2	485.735074	969.455596	-0.87828	-0.00042661	3.9069	0.0018977	3.0286	0.0014711	485.7373242007787	34.684	0.45087	34.684	34.388	34.839	0					19	15	2	0	0	0	0.2322	1	6854	6854		14.838	2.3067	1	88706	+		2839	17729	1473	1473	3595	3595					-0.030353785162787972
ATQMVRMILK	10	2 Oxidation (M)	_ATQM(Oxidation (M))VRM(Oxidation (M))ILK_		ATQM(1)VRM(1)ILK		ATQM(41)VRM(41)ILK	0	0	2		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.2259216308594	3	408.226393	1221.65735	-0.095831	-3.9121E-05	-1.107	-0.00045189	-1.2028	-0.00049102	408.2261312482188	24.872	0.48073	24.872	24.639	25.12	0					74	16	7	0	0	0	0.19489	1	3878	3878		41.347	41.347	1	2467200			2840	4923	1474	1474	3596	3596		606;607			0.055386458534258054
ATQMVRMILK	10	2 Oxidation (M)	_ATQM(Oxidation (M))VRM(Oxidation (M))ILK_		ATQM(1)VRM(1)ILK		ATQM(57)VRM(57)ILK	0	0	2		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.22637939453125	3	408.226393	1221.65735	-0.16809	-6.8618E-05	-0.25267	-0.00010315	-0.42075	-0.00017176	408.226304810992	24.604	0.53538	24.573	24.174	24.709	-0.031408					43	18	3	0	0	0	0.058704	1	3778	3778		57.108	57.108	1	1534500			2841	4923	1474	1474	3597	3597		606;607			0.055386458534258054
ATQNPKRIQR	10	Unmodified	_ATQNPKRIQR_					0	0	0		DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.57025146484375	3	404.570427	1210.68945	-0.4401	-0.00017805	0.21648	8.7582E-05	-0.22361	-9.0468E-05	404.57035035608243	12.619	0.45921	12.521	12.383	12.842	-0.09787					27	15	3	0	0	0	0.39935	1	190	190		1.7423	0.14999	1	56331			2842	261	1475	1475	3598	3598					0.09253517643082887
ATQNPKRIQR	10	Unmodified	_ATQNPKRIQR_					0	0	0		DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.5702209472656	3	404.570427	1210.68945	-0.54457	-0.00022032	0.12417	5.0235E-05	-0.4204	-0.00017008	404.57036045049534	12.629	0.26801	12.562	12.434	12.702	-0.067496					13	8	2	0	0	0	0.40992	1	198	198		1.9064	0.1641	1	90336			2843	261	1475	1475	3599	3599					0.09253517643082887
ATQNPKRIQR	10	Unmodified	_ATQNPKRIQR_					0	0	0		DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	404.570427	1210.68945	-0.54457	-0.00022032	0.12417	5.0235E-05	-0.4204	-0.00017008	404.57036045049534	12.629	0.26801	12.562	12.434	12.702	-0.067496	-0.0017803	-6.232E-05	NaN	1.7423	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90336			2844	261	1475	1475							0.09253517643082887
ATQPRPLL	8	Unmodified	_ATQPRPLL_					0	0	0			REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2713623046875	2	448.271627	894.528701	0.30623	0.00013727	-0.62399	-0.00027972	-0.31776	-0.00014244	448.2712947207956	35.661	0.60069	35.661	35.412	36.012	0					34	21	2	0	0	0	0.22	1	7149	7149		39.957	3.9131	1	450950	+		2845	19684	1476	1476	3600	3600					0.07721794997007692
ATQPRPLL	8	Unmodified	_ATQPRPLL_					0	0	0			REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.2713623046875	2	448.271627	894.528701	0.19572	8.7735E-05	-0.74884	-0.00033568	-0.55312	-0.00024795	448.2712906075268	35.535	0.65506	35.617	35.325	35.98	0.082355					36	23	2	0	0	0	0.27124	1	7134	7134		34.102	1.797	1	523400	+		2846	19684	1476	1476	3601	3601					0.07721794997007692
ATQPRPLL	8	Unmodified	_ATQPRPLL_					0	0	0			REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.27130126953125	2	448.271627	894.528701	-0.023937	-1.073E-05	-0.35057	-0.00015715	-0.37451	-0.00016788	448.27146096521363	35.484	0.69198	35.57	35.317	36.009	0.08625					38	24	3	0	0	0	0.27124	1	7085	7085		34.102	3.8776	1	451220	+		2847	19684	1476	1476	3602	3602					0.07721794997007692
ATQQLSKQL	9	Unmodified	_ATQQLSKQL_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.2825012207031	2	508.790381	1015.56621	0.098243	4.9985E-05	0.034339	1.7471E-05	0.13258	6.7456E-05	508.79034904155566	22.652	0.57184	22.607	22.379	22.951	-0.044867					39	19	3	0	0	0	0.25989	1	3262	3262		14.838	4.0143	1	118390			2848	3937	1477	1477	3603	3603					0.059048414719427456
ATQQPVTADK	10	Unmodified	_ATQQPVTADK_					0	0	0		ENST00000345541.6_1_10:28900683-28903615:+|nuORF;nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC	ENST00000345541.6_1_10:28900683-28903615:+|nuORF	ENST00000345541.6_1_10:28900683-28903615:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2565307617188	2	529.77747	1057.54039	0.19899	0.00010542	-0.46116	-0.00024431	-0.26217	-0.00013889	529.776984830001	14.679	0.31365	14.679	14.531	14.845	0					19	10	2	0	0	0	0.31746	1	800	800		9.544	2.2547	1	73249			2849	1457	1478	1478	3604	3604					0.01391947229649304
ATQQPVTADK	10	Unmodified	_ATQQPVTADK_					0	0	0		ENST00000345541.6_1_10:28900683-28903615:+|nuORF;nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC	ENST00000345541.6_1_10:28900683-28903615:+|nuORF	ENST00000345541.6_1_10:28900683-28903615:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2564086914062	2	529.77747	1057.54039	0.1437	7.6131E-05	-0.30616	-0.0001622	-0.16246	-8.6067E-05	529.7771553071124	14.789	0.25735	14.681	14.562	14.82	-0.1078					15	8	2	0	0	0	0.31746	1	840	840		9.544	4.2471	1	92695			2850	1457	1478	1478	3605	3605					0.01391947229649304
ATQQPVTADK	10	Unmodified	_ATQQPVTADK_					0	0	0		ENST00000345541.6_1_10:28900683-28903615:+|nuORF;nc|ENSG00000095787|Q9BTA9-5|WAC;nc|ENSG00000095787|Q9BTA9-2|WAC;ENSG00000095787|ENST00000354911|WAC	ENST00000345541.6_1_10:28900683-28903615:+|nuORF	ENST00000345541.6_1_10:28900683-28903615:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.25634765625	2	529.77747	1057.54039	0.17409	9.2229E-05	-0.42675	-0.00022608	-0.25266	-0.00013386	529.7770366335435	14.827	0.38704	14.763	14.539	14.926	-0.064414					23	13	2	0	0	0	0.3183	1	849	849		8.4443	4.4999	1	74965			2851	1457	1478	1478	3606	3606					0.01391947229649304
ATQSAQVLLEK	11	Unmodified	_ATQSAQVLLEK_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.335205078125	2	594.335153	1186.65575	-0.22101	-0.00013135	0.52436	0.00031165	0.30335	0.00018029	594.3352872418732	35.342	0.3873	35.42	35.224	35.611	0.077381					22	13	2	0	0	0	0.011444	1	7075	7075		66.617	35.913	1	281950			2852	273	1479	1479	3607	3607					0.06989051360642407
ATQSAQVLLEK	11	Unmodified	_ATQSAQVLLEK_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	594.335153	1186.65575	0.13175	7.8302E-05	-0.020719	-1.2314E-05	0.11103	6.5988E-05	594.3351566074784	35.44	0.37776	35.44	35.227	35.604	0	0.015835	-0.00027657	NaN	66.617	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286130			2853	273	1479	1479							0.06989051360642407
ATQSAQVLLEK	11	Unmodified	_ATQSAQVLLEK_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	594.335153	1186.65575	0.09964	5.922E-05	0.24268	0.00014424	0.34232	0.00020345	594.3351645964826	35.337	0.38053	35.413	35.21	35.59	0.075306	-0.011449	3.6526E-05	NaN	66.617	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252480			2854	273	1479	1479							0.06989051360642407
ATQSFSTFR	9	Unmodified	_ATQSFSTFR_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7593383789062	2	522.759081	1043.50361	0.38036	0.00019884	0.048114	2.5152E-05	0.42847	0.00022399	522.7591464877855	34.205	1.1968	34.205	33.865	35.062	0					109	42	4	0	0	0	4.0583E-11	4	6729	6684;6729;6771;6818		190.03	128.43	1	5893800			2855	619	1480	1480	3608;3609;3610;3611	3609					-0.01640304596230635
ATQSFSTFR	9	Unmodified	_ATQSFSTFR_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7594604492188	2	522.759081	1043.50361	0.53765	0.00028106	-0.098436	-5.1458E-05	0.43921	0.0002296	522.7590590175232	34.071	1.1955	34.137	33.786	34.981	0.06636					121	42	5	0	0	0	4.0583E-11	5	6670	6629;6670;6673;6714;6758		190.03	128.43	1	5756200			2856	619	1480	1480	3612;3613;3614;3615;3616	3613					-0.01640304596230635
ATQSFSTFR	9	Unmodified	_ATQSFSTFR_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7593994140625	2	522.759081	1043.50361	0.29067	0.00015195	0.12043	6.2954E-05	0.41109	0.0002149	522.7591783324743	34.033	1.2505	34.099	33.799	35.05	0.0667					111	44	4	0	0	0	8.9028E-17	4	6667	6622;6667;6709;6753		216.42	153.85	1	6185200			2857	619	1480	1480	3617;3618;3619;3620	3618					-0.01640304596230635
ATQTQFFHVK	10	Unmodified	_ATQTQFFHVK_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;IFI16|p.F441Sfs*13|1|0.06|ENSG00000163565|chr1:159032683-159032684|-/CGGGTTTGTTTTTTTCTTTATC|frameshift_variant;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.8175659179688	2	603.81693	1205.61931	0.51723	0.00031231	0.21297	0.00012859	0.73019	0.0004409	603.8170225119433	34.178	0.64842	34.178	33.94	34.588	0					53	22	4	0	0	0	0.0027997	2	6700	6700;6750		104.48	81.748	1	462590			2858	5702	1481	1481	3621;3622	3621					0.024722192546050792
ATQTQFFHVK	10	Unmodified	_ATQTQFFHVK_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;IFI16|p.F441Sfs*13|1|0.06|ENSG00000163565|chr1:159032683-159032684|-/CGGGTTTGTTTTTTTCTTTATC|frameshift_variant;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.817626953125	2	603.81693	1205.61931	0.77317	0.00046685	0.18702	0.00011293	0.96019	0.00057978	603.8169444927777	34.014	0.58963	34.081	33.845	34.435	0.06636					49	20	3	0	0	0	2.2521E-05	2	6660	6660;6711		142.92	119.13	1	467020			2859	5702	1481	1481	3623;3624	3623					0.024722192546050792
ATQTQFFHVK	10	Unmodified	_ATQTQFFHVK_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;IFI16|p.F441Sfs*13|1|0.06|ENSG00000163565|chr1:159032683-159032684|-/CGGGTTTGTTTTTTTCTTTATC|frameshift_variant;nc|ENSG00000163565|Q16666-3|IFI16;ENST00000485134.1_1_1:158911778-158914889:+|nuORF;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.3192749023438	2	603.81693	1205.61931	0.22354	0.00013498	0.92349	0.00055762	1.147	0.00069259	603.8173534061668	33.987	0.55591	34.053	33.824	34.38	0.0667					47	19	3	0	0	0	0.00014769	1	6652	6652		132.22	107.23	1	501870			2860	5702	1481	1481	3625	3625					0.024722192546050792
ATQTSVVVK	9	Unmodified	_ATQTSVVVK_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.23681640625	2	466.7742	931.533846	-0.041851	-1.9535E-05	0.14459	6.7491E-05	0.10274	4.7956E-05	466.77426847220397	19.968	0.43971	19.968	19.768	20.207	0					31	16	3	0	0	0	0.18936	1	2399	2399		32.786	9.6373	1	176270			2861	5366	1482	1482	3626	3626					0.06534054068958994
ATQTSVVVK	9	Unmodified	_ATQTSVVVK_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY;nc|ENSG00000158636|Q7Z589-6|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.23687744140625	2	466.7742	931.533846	0.16954	7.9139E-05	-0.35794	-0.00016708	-0.18839	-8.7938E-05	466.77411936006655	20.18	0.45855	20.064	19.812	20.271	-0.11592					30	16	3	0	0	0	0.23749	1	2460	2460		20.415	8.7742	1	133760			2862	5366	1482	1482	3627	3627					0.06534054068958994
ATQVAVSVPK	10	Unmodified	_ATQVAVSVPK_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2955017089844	2	500.295299	998.576045	0.25456	0.00012736	0.055736	2.7885E-05	0.3103	0.00015524	500.2953109004845	33.277	0.75155	33.277	32.895	33.646	0					58	26	3	0	0	0	0.0055285	1	6453	6453		88.576	58.735	1	558510			2863	2591	1483	1483	3628	3628					0.07670029477333173
ATQVAVSVPK	10	Unmodified	_ATQVAVSVPK_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2955627441406	2	500.295299	998.576045	0.31118	0.00015568	-0.12271	-6.1393E-05	0.18846	9.4287E-05	500.29514700447237	33.195	0.69243	33.25	32.946	33.639	0.055309					52	24	3	0	0	0	0.0029358	2	6397	6397;6412		103.69	67.184	1	635580			2864	2591	1483	1483	3629;3630	3629					0.07670029477333173
ATQVAVSVPK	10	Unmodified	_ATQVAVSVPK_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2954406738281	2	500.295299	998.576045	0.24164	0.00012089	0.36392	0.00018207	0.60556	0.00030296	500.29538675543796	33.153	0.68787	33.207	32.877	33.565	0.054375					58	24	3	0	0	0	0.0029358	1	6417	6417		103.69	67.184	1	653250			2865	2591	1483	1483	3631	3631					0.07670029477333173
ATQVIKNVQVK	11	Unmodified	_ATQVIKNVQVK_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.S1021Ifs*16|1|0.34|ENSG00000129003|chr15:61964855-61964856|AG/-|frameshift_variant;VPS13C|p.V1134Cfs*5|1|0.16|ENSG00000129003|chr15:61962784-61962785|-/A|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5699462890625	3	409.918834	1226.73467	-0.19382	-7.9449E-05	-1.9495	-0.00079912	-2.1433	-0.00087857	410.2526251847324	25.625	0.35482	25.625	25.328	25.683	0					15	11	2	0	0	0	0.33303	1	4095	4095		1.1098	0	1	61627			2866	3405	1484	1484	3632	3632					0.13037323385606214
ATQVIKNVQVK	11	Unmodified	_ATQVIKNVQVK_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;VPS13C|p.S1021Ifs*16|1|0.34|ENSG00000129003|chr15:61964855-61964856|AG/-|frameshift_variant;VPS13C|p.V1134Cfs*5|1|0.16|ENSG00000129003|chr15:61962784-61962785|-/A|frameshift_variant	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5698547363281	3	409.918834	1226.73467	-0.1924	-7.887E-05	-1.8152	-0.0007441	-2.0076	-0.00082297	410.2522269288433	25.577	0.31194	25.521	25.365	25.677	-0.055931					23	10	3	0	0	0	0.33303	1	4112	4112		2.4348	0.52841	1	60537			2867	3405	1484	1484	3633	3633					0.13037323385606214
ATQVSWPTGF	10	Unmodified	_ATQVSWPTGF_					0	0	0			REV__CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	REV__CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.2717895507812	2	547.269281	1092.52401	0.55324	0.00030277	2.1035	0.0011512	2.6567	0.0014539	547.2705128731891	75.853	1.1303	75.822	75.059	76.189	-0.031487					118	41	4	0	0	0	0.25219	1	19539	19539		26.268	0.86883	1	1334600	+		2868	13283	1485	1485	3634	3634					-0.018551339364194064
ATQWSNQLLF	10	Unmodified	_ATQWSNQLLF_					0	0	0			REV__ENST00000572919.1_3_17:3488830-3495572:-|nuORF	REV__ENST00000572919.1_3_17:3488830-3495572:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.21563720703125	3	403.208384	1206.60332	-0.22373	-9.021E-05	-2.0086	-0.00080989	-2.2323	-0.0009001	403.207816760271	23.967	0.56321	23.894	23.588	24.151	-0.072559					23	18	2	0	0	0	0.40756	1	3663	3663		2.086	0	1	30037	+		2869	18678	1486	1486	3635	3635					0.008285130177227984
ATQYPFVLRL	10	Unmodified	_ATQYPFVLRL_					0	0	0			REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2149353027344	3	403.232641	1206.67609	-0.28834	-0.00011627	-3.0315	-0.0012224	-3.3199	-0.0013387	403.565000543125	34.18	0.19681	34.246	34.12	34.317	0.06636					10	6	2	0	0	0	0.3179	1	6682	6682		5.7834	1.3773	1	58067	+		2870	17570	1487	1487	3636	3636					0.08102266811124537
ATREEVAWSQL	11	Unmodified	_ATREEVAWSQL_					0	0	0			REV__ENST00000478553.1_1_20:4763250-4763406:-|nuORF	REV__ENST00000478553.1_1_20:4763250-4763406:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.59417724609375	3	430.554331	1288.64116	-0.58185	-0.00025052	0.12008	5.1701E-05	-0.46178	-0.00019882	430.888538399139	35.231	1.3194	35.306	34.763	36.083	0.075306					123	47	6	0	0	0	0.33025	1	7051	7051		6.2344	6.2344	1	1691100	+		2871	21456	1488	1488	3637	3637					0.008389792125399254
ATREMTLQQAL	11	Unmodified	_ATREMTLQQAL_					0	0	0			REV__nc|ENSG00000197712|Q8IWE2-2|FAM114A1	REV__nc|ENSG00000197712|Q8IWE2-2|FAM114A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.89630126953125	3	421.223817	1260.64962	0.18342	7.7263E-05	0.35315	0.00014876	0.53658	0.00022602	421.2238553847137	40.205	0.71871	40.305	39.844	40.563	0.099403					36	25	2	0	0	0	0.32912	1	8521	8521		8.2864	2.8837	1	222060	+		2872	18759	1489	1489	3638	3638					0.02972209857512098
ATRKKPDLA	9	Unmodified	_ATRKKPDLA_					0	0	0		ENST00000429630.1_1_7:143077188-143077587:-|nuORF	ENST00000429630.1_1_7:143077188-143077587:-|nuORF	ENST00000429630.1_1_7:143077188-143077587:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3004150390625	2	500.300916	998.587279	0.2509	0.00012552	-0.21409	-0.00010711	0.03681	1.8416E-05	500.300634724032	21.862	0.54737	21.812	21.604	22.151	-0.049377					44	19	3	0	0	0	0.21303	1	2955	2955		21.747	3.6003	1	189070			2873	10453	1490	1490	3639	3639					0.08792851571467963
ATRLAQKRFK	10	Unmodified	_ATRLAQKRFK_					0	0	0		ENST00000380122.9_2_X:16861892-16862162:+|nuORF	ENST00000380122.9_2_X:16861892-16862162:+|nuORF	ENST00000380122.9_2_X:16861892-16862162:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.91912841796875	3	406.919168	1217.73567	0.11062	4.5014E-05	-0.2132	-8.6756E-05	-0.10258	-4.1743E-05	406.91904331719894	29.535	0.58805	29.535	29.3	29.888	0					43	20	3	0	0	0	0.38952	1	5292	5292		5.4027	1.5264	1	188870			2874	9979	1491	1491	3640	3640					0.1355158254516482
ATRLAQKRFK	10	Unmodified	_ATRLAQKRFK_					0	0	0		ENST00000380122.9_2_X:16861892-16862162:+|nuORF	ENST00000380122.9_2_X:16861892-16862162:+|nuORF	ENST00000380122.9_2_X:16861892-16862162:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.9190673828125	3	406.919168	1217.73567	-0.0042324	-1.7223E-06	-0.18071	-7.3534E-05	-0.18494	-7.5257E-05	406.91910666781786	29.478	0.5016	29.49	29.272	29.774	0.012266					41	16	3	0	0	0	0.37297	1	5267	5267		8.4443	2.2525	1	219740			2875	9979	1491	1491	3641	3641					0.1355158254516482
ATRLAQKRFK	10	Unmodified	_ATRLAQKRFK_					0	0	0		ENST00000380122.9_2_X:16861892-16862162:+|nuORF	ENST00000380122.9_2_X:16861892-16862162:+|nuORF	ENST00000380122.9_2_X:16861892-16862162:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.91925048828125	3	406.919168	1217.73567	-0.21515	-8.7547E-05	0.078866	3.2092E-05	-0.13628	-5.5456E-05	406.91920094179534	29.468	0.55106	29.482	29.329	29.88	0.013474					40	18	3	0	0	0	0.35624	1	5288	5288		11.518	3.5725	1	214430			2876	9979	1491	1491	3642	3642					0.1355158254516482
ATRLNKLIY	9	Unmodified	_ATRLNKLIY_					0	0	0			REV__ENST00000502269.1_1_5:78908746-78909782:+|nuORF	REV__ENST00000502269.1_1_5:78908746-78909782:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2476806640625	2	546.332216	1090.64988	0.34721	0.00018969	0.4	0.00021853	0.74721	0.00040823	546.3323881431165	19.774	0.33278	19.774	19.6	19.933	0					14	11	2	0	0	0	0.26145	1	2290	2290		2.0598	0.21551	1	27928	+		2877	21713	1492	1492	3643	3643					0.10817997639674104
ATRPFEKLKR	10	Unmodified	_ATRPFEKLKR_					0	0	0			REV__ENST00000443945.6_1_13:47127426-47279607:+|nuORF	REV__ENST00000443945.6_1_13:47127426-47279607:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.2381591796875	3	415.919056	1244.73534	0.29052	0.00012083	-0.71752	-0.00029843	-0.42699	-0.00017759	415.9187212174014	37.076	0.49784	37.076	36.787	37.285	0					33	17	3	0	0	0	0.31867	1	7623	7623		7.9454	3.5392	1	151900	+		2878	15792	1493	1493	3644	3644					0.12276162825287429
ATRPKQPI	8	Unmodified	_ATRPKQPI_					0	0	0			REV__nc|ENSG00000079691|Q5VZK9-2|CARMIL1	REV__nc|ENSG00000079691|Q5VZK9-2|CARMIL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2488708496094	2	455.777077	909.5396	-0.13975	-6.3697E-05	0.47419	0.00021613	0.33444	0.00015243	455.7771462349697	15.235	0.47363	15.171	14.984	15.457	-0.064413					24	15	2	0	0	0	0.34247	1	980	980		8.5933	3.3626	1	69475	+		2879	13875	1494	1494	3645	3645					0.08121197371269773
ATRPVHRG	8	Unmodified	_ATRPVHRG_					0	0	0		ENSG00000174292|ENST00000688331|TNK1;nc|ENSG00000174292|Q13470|TNK1	ENSG00000174292|ENST00000688331|TNK1	ENSG00000174292|ENST00000688331|TNK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.24560546875	2	447.256843	892.499132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.833	1	35.833	35.333	36.333	0								0	0	0	0.35014	1	7217	7217		14.582	2.0501	1				2880	6784	1495	1495	3646	3646					0.048582757715166736
ATRSRIVYFI	10	Unmodified	_ATRSRIVYFI_					0	0	0		ENST00000426898.2_1_12:45610123-45776982:+|nuORF;nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6	ENST00000426898.2_1_12:45610123-45776982:+|nuORF	ENST00000426898.2_1_12:45610123-45776982:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.90484619140625	3	409.239907	1224.69789	0.26982	0.00011042	3.0161	0.0012343	3.2859	0.0013447	409.5752282674986	36.054	0.91421	36.141	35.537	36.451	0.08625					42	32	2	0	0	0	0.31746	1	7356	7356		10.315	0	1	604520			2881	6963	1496	1496	3647	3647					0.09453071559687487
ATRSRRPRPE	10	Unmodified	_ATRSRRPRPE_					0	0	0			REV__ENST00000544726.2_2_12:109592493-109592730:+|nuORF	REV__ENST00000544726.2_2_12:109592493-109592730:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.90484619140625	3	409.233927	1224.67995	0.44101	0.00018048	1.8205	0.00074499	2.2615	0.00092547	409.2348510582075	36.302	0.54165	36.388	36.113	36.654	0.08625					25	18	2	0	0	0	0.31651	1	7356	7356		11.518	0	1	367820	+		2882	22158	1497	1497	3648	3648					0.07659749357594592
ATSAARHQLRL	11	Unmodified	_ATSAARHQLRL_					0	0	0			REV__ENST00000330292.4_17:80207889-80208285:+|nuORF	REV__ENST00000330292.4_17:80207889-80208285:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.2263488769531	3	408.570427	1222.68945	-0.207	-8.4576E-05	-1.0729	-0.00043834	-1.2799	-0.00052292	408.56988842089436	25.361	0.34866	25.305	25.134	25.482	-0.055931					28	11	4	0	0	0	0.32824	1	3993	3993		12.856	5.5667	1	177450	+		2883	20034	1498	1498	3649	3649					0.08701517643089574
ATSAARHQLRL	11	Unmodified	_ATSAARHQLRL_					0	0	0			REV__ENST00000330292.4_17:80207889-80208285:+|nuORF	REV__ENST00000330292.4_17:80207889-80208285:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.2263488769531	3	408.570427	1222.68945	-0.34857	-0.00014241	-1.107	-0.00045228	-1.4555	-0.00059469	408.5699238082171	25.393	0.38895	25.361	25.154	25.543	-0.031408					28	13	3	0	0	0	0.33122	1	3989	3989		7.0371	2.1401	1	175650	+		2884	20034	1498	1498	3650	3650					0.08701517643089574
ATSAFQTQK	9	Unmodified	_ATSAFQTQK_					0	0	0		ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.253662109375	2	491.253631	980.49271	0.31615	0.00015531	-0.18465	-9.0711E-05	0.1315	6.46E-05	491.25350955962955	17.052	0.9681	17.052	16.867	17.835	0					56	33	2	0	0	0	0.0066776	1	1524	1524		84.522	25.154	1	542550			2885	4258	1499	1499	3651	3651					0.0016829302948053737
ATSAFQTQK	9	Unmodified	_ATSAFQTQK_					0	0	0		ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	491.253631	980.49271	0.14902	7.3206E-05	0.18285	8.9824E-05	0.33186	0.00016303	491.2536219623441	17.214	0.86616	17.096	16.828	17.694	-0.11739	0.017209	0.00029486	NaN	84.522	66	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	452220			2886	4258	1499	1499							0.0016829302948053737
ATSAFQTQK	9	Unmodified	_ATSAFQTQK_					0	0	0		ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.253631	980.49271	0.39567	0.00019437	-0.20497	-0.00010069	0.1907	9.3682E-05	491.2534523225829	17.149	0.9066	17.089	16.859	17.766	-0.060429	0.0094855	-8.6167E-05	NaN	84.522	56	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517730			2887	4258	1499	1499							0.0016829302948053737
ATSAPLVSR	9	Unmodified	_ATSAPLVSR_					0	0	0		ENSG00000143126|ENST00000271332|CELSR2;ENST00000497509.1_1_22:46926386-46930076:-|nuORF;ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3;nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;nc|ENSG00000075275|Q9NYQ6-2|CELSR1	ENSG00000143126|ENST00000271332|CELSR2;ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.76104736328125	2	451.258717	900.50288	0.15545	7.0148E-05	3.5743	0.0016129	3.7297	0.0016831	451.26067247164	24.586	1.1393	24.586	24.22	25.359	0					81	38	3	0	0	0	0.17242	1	3852	3852		36.127	7.6402	1	627880			2888	1042;393;4480	1500	1500	3652	3652					0.048649007547169276
ATSAQLVWISK	11	Unmodified	_ATSAQLVWISK_					0	0	0		ENST00000398529.7_1_2:65325145-65331914:-|nuORF	ENST00000398529.7_1_2:65325145-65331914:-|nuORF	ENST00000398529.7_1_2:65325145-65331914:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8159790039062	2	602.340238	1202.66592	0.68926	0.00041517	1.7804	0.0010724	2.4696	0.0014876	602.3410800767834	51.164	0.61064	51.164	50.846	51.456	0					39	22	2	0	0	0	0.32296	1	11953	11953		22.109	8.2028	1	248740			2889	10165	1501	1501	3653	3653					0.07269659085886815
ATSFDLRNFAE	11	Unmodified	_ATSFDLRNFAE_					0	0	0			REV__ENST00000520511.1_1_8:124539464-124553254:-|nuORF	REV__ENST00000520511.1_1_8:124539464-124553254:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.20703125	3	424.206932	1269.59897	-0.19659	-8.3394E-05	0.94333	0.00040017	0.74674	0.00031677	424.20720227725354	22.373	0.42633	22.273	22.045	22.471	-0.10034					33	15	3	0	0	0	0.47633	1	3140	3140		1.2148	0	1	96653	+		2890	16758	1502	1502	3654	3654					-0.025049961958302447
ATSFLRHIRK	10	Unmodified	_ATSFLRHIRK_					0	0	0		ENST00000472324.5_1_X:152935914-152936728:-|nuORF;nc|ENSG00000130822|Q6P2M8-3|PNCK;ENST00000466074.5_1_X:152935914-152937529:-|nuORF;ENSG00000130822|ENST00000340888|PNCK;nc|ENSG00000130822|Q6P2M8-6|PNCK;nc|ENSG00000130822|Q6P2M8-2|PNCK;nc|ENSG00000130822|Q6P2M8-5|PNCK	ENST00000472324.5_1_X:152935914-152936728:-|nuORF	ENST00000472324.5_1_X:152935914-152936728:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.24737548828125	3	410.247285	1227.72002	-0.04768	-1.9561E-05	1.4263	0.00058512	1.3786	0.00056556	410.2467632246169	22.071	0.62981	22.021	21.774	22.404	-0.049377					58	22	4	0	0	0	0.35961	1	3028	3028		10.899	4.6646	1	116910			2891	3523	1503	1503	3655	3655					0.11527296028111778
ATSGVPVYK	9	Unmodified	_ATSGVPVYK_					0	0	0		nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.6007080078125	2	461.255643	920.496732	-0.040333	-1.8604E-05	1.0499	0.00048429	1.0096	0.00046568	461.2563825801996	26.9	0.85129	26.9	26.321	27.172	0					65	29	3	0	0	0	0.24289	1	4514	4514		13.042	2.9685	1	449950			2892	4100	1504	1504	3656	3656					0.03330382523188291
ATSGVPVYK	9	Unmodified	_ATSGVPVYK_					0	0	0		nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.6003723144531	2	461.255643	920.496732	0.013197	6.0871E-06	1.0564	0.00048725	1.0696	0.00049334	461.256454149209	26.861	0.84951	26.84	26.28	27.13	-0.021412					68	29	4	0	0	0	0.22674	1	4467	4467		22.736	3.4793	1	521700			2893	4100	1504	1504	3657	3657					0.03330382523188291
ATSGVVAVR	9	Unmodified	_ATSGVVAVR_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8882751464844	2	430.253434	858.492316	-0.23274	-0.00010014	0.51767	0.00022273	0.28493	0.00012259	430.2535926413711	22.369	0.74158	22.369	22.133	22.875	0					53	25	3	0	0	0	0.24993	1	3191	3191		8.7454	4.4162	1	344430			2894	1012	1505	1505	3658	3658					0.057409181002867626
ATSGVVAVR	9	Unmodified	_ATSGVVAVR_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.888427734375	2	430.253434	858.492316	-0.19743	-8.4945E-05	0.20326	8.7455E-05	0.0058348	2.5105E-06	430.253546807608	22.496	0.65358	22.408	22.166	22.82	-0.087608					54	23	3	0	0	0	0.25202	1	3240	3240		3.5965	1.7523	1	407360			2895	1012	1505	1505	3659	3659					0.057409181002867626
ATSGYFVGVDQ	11	Unmodified	_ATSGYFVGVDQ_					0	0	0			REV__ENST00000579065.1_1_17:8052750-8054072:-|nuORF	REV__ENST00000579065.1_1_17:8052750-8054072:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2689208984375	2	572.269478	1142.5244	0.10281	5.8836E-05	-0.64606	-0.00036972	-0.54324	-0.00031088	572.2690688755928	57.324	0.51492	57.306	57.091	57.606	-0.0172					33	18	2	0	0	0	0.28258	1	13824	13824		23.79	4.4278	1	701480	+		2896	18061	1506	1506	3660	3660					-0.04115759007231645
ATSIPAILK	9	Unmodified	_ATSIPAILK_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7506103515625	2	457.289485	912.564418	0.7684	0.00035138	-0.52218	-0.00023879	0.24622	0.00011259	457.2891488624635	47.252	0.65049	47.307	46.972	47.622	0.054375					43	23	2	0	0	0	0.21389	1	10706	10706		25.399	14.575	1	574720			2897	2298	1507	1507	3661	3661					0.104638324540133
ATSLGHFTK	9	Unmodified	_ATSLGHFTK_					0	0	0		nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;ENST00000540885.1_1_12:1016996-1017955:+|nuORF	nc|ENSG00000060237|Q9H4A3-6|WNK1	nc|ENSG00000060237|Q9H4A3-6|WNK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2586975097656	2	481.258717	960.50288	0.14108	6.7897E-05	0.48501	0.00023342	0.62609	0.00030131	481.2588669494375	21.926	0.59832	21.926	21.654	22.252	0					49	21	3	0	0	0	0.01909	2	2965	2965;3016		65.474	36.392	1	373240			2898	12578	1508	1508	3662;3663	3662					0.02104900754704886
ATSLGHFTK	9	Unmodified	_ATSLGHFTK_					0	0	0		nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;ENST00000540885.1_1_12:1016996-1017955:+|nuORF	nc|ENSG00000060237|Q9H4A3-6|WNK1	nc|ENSG00000060237|Q9H4A3-6|WNK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.25885009765625	2	481.258717	960.50288	0.2355	0.00011334	0.4315	0.00020766	0.667	0.000321	481.2588160467136	21.964	0.81352	21.864	21.608	22.422	-0.10034					60	29	3	0	0	0	0.0045319	2	2988	2988;3034		90.135	50.178	1	444030			2899	12578	1508	1508	3664;3665	3664					0.02104900754704886
ATSLGHFTK	9	Unmodified	_ATSLGHFTK_					0	0	0		nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;ENST00000540885.1_1_12:1016996-1017955:+|nuORF	nc|ENSG00000060237|Q9H4A3-6|WNK1	nc|ENSG00000060237|Q9H4A3-6|WNK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2586975097656	2	481.258717	960.50288	0.15603	7.5088E-05	0.46431	0.00022345	0.62033	0.00029854	481.2588343478888	21.94	0.686	21.89	21.604	22.29	-0.049377					56	24	4	0	0	0	0.01909	2	2967	2967;3016		65.474	29.347	1	438210			2900	12578	1508	1508	3666;3667	3666					0.02104900754704886
ATSLVSTKE	9	Unmodified	_ATSLVSTKE_					0	0	0			REV__nc|ENSG00000079931|Q6UVY6-2|MOXD1	REV__nc|ENSG00000079931|Q6UVY6-2|MOXD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.57373046875	2	468.25584	934.497126	0.21149	9.9031E-05	-0.31559	-0.00014778	-0.1041	-4.8745E-05	468.2556643228178	19.492	0.78586	19.437	19.144	19.93	-0.055693					63	27	3	0	0	0	0.24848	1	2252	2252		13.906	0.86358	1	231750	+		2901	13878	1509	1509	3668	3668					0.027257574523900985
ATSPALFNR	9	Unmodified	_ATSPALFNR_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7643127441406	2	488.764166	975.513779	0.14915	7.29E-05	-0.60386	-0.00029514	-0.45471	-0.00022224	488.7642025851953	35.486	0.76703	35.486	35.033	35.8	0					78	27	4	0	0	0	0.016723	1	7106	7106		69.105	42.221	1	1361900			2902	276	1510	1510	3669	3669					0.02504303129001073
ATSPALFNR	9	Unmodified	_ATSPALFNR_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7643127441406	2	488.764166	975.513779	0.17935	8.7659E-05	0.22092	0.00010798	0.40027	0.00019564	488.76422911285675	35.441	0.49738	35.516	35.234	35.732	0.075306					48	17	3	0	0	0	0.050251	1	7078	7078		62.573	31.936	1	1311600			2903	276	1510	1510	3670	3670					0.02504303129001073
ATSPALFNR	9	Unmodified	_ATSPALFNR_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7642822265625	2	488.764166	975.513779	-0.1969	-9.624E-05	-0.23898	-0.00011681	-0.43589	-0.00021305	488.764426259468	35.41	0.88448	35.487	35.005	35.889	0.077377					77	31	4	0	0	0	0.04299	1	7067	7067		55.503	26.421	1	1396000			2904	276	1510	1510	3671	3671					0.02504303129001073
ATSPGRLFR	9	Unmodified	_ATSPGRLFR_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7854919433594	2	502.785433	1003.55631	0.27194	0.00013673	0.60395	0.00030365	0.87588	0.00044038	502.7853928157725	26.713	0.39374	26.675	26.402	26.795	-0.038671					32	13	4	0	0	0	0.20626	1	4456	4456		22.736	2.2827	1	208410			2905	1551	1511	1511	3672	3672					0.05467698257234588
ATSPGRLFR	9	Unmodified	_ATSPGRLFR_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	502.785433	1003.55631	0.24668	0.00012403	0.63624	0.00031989	0.88292	0.00044392	502.78552456313616	26.683	0.5206	26.683	26.35	26.871	0	0.018027	0.00043103	NaN	22.736	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174050			2906	1551	1511	1511							0.05467698257234588
ATSPGRLFR	9	Unmodified	_ATSPGRLFR_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	502.785433	1003.55631	0.51016	0.0002565	-0.28949	-0.00014555	0.22068	0.00011095	502.78530797702314	26.659	0.43136	26.637	26.409	26.841	-0.022238	-0.02777	-0.00049985	NaN	22.736	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220580			2907	1551	1511	1511							0.05467698257234588
ATSPIIIHR	9	Unmodified	_ATSPIIIHR_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2629699707031	2	504.303458	1006.59236	0.53028	0.00026742	-2.6147	-0.0013186	-2.0844	-0.0010512	504.3032066544567	29.375	0.48825	29.375	29.117	29.605	0					37	17	3	0	0	0	0.20167	1	5224	5224		29.082	14.243	1	142310			2908	3863	1512	1512	3673	3673					0.08933155434090168
ATSPIIIHR	9	Unmodified	_ATSPIIIHR_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2631530761719	2	504.303458	1006.59236	0.33663	0.00016976	-1.5268	-0.00076996	-1.1902	-0.0006002	504.30349524568055	29.341	0.55939	29.354	29	29.56	0.012266					28	19	2	0	0	0	0.17242	1	5188	5188		29.082	8.628	1	117100			2909	3863	1512	1512	3674	3674					0.08933155434090168
ATSPIIIHR	9	Unmodified	_ATSPIIIHR_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2630920410156	2	504.303458	1006.59236	0.15334	7.7328E-05	-2.2996	-0.0011597	-2.1463	-0.0010824	504.3036311486202	29.383	0.48372	29.396	29.14	29.623	0.013474					38	16	3	0	0	0	0.17242	1	5228	5228		36.127	15.673	1	153590			2910	3863	1512	1512	3675	3675					0.08933155434090168
ATSPLHINK	9	Unmodified	_ATSPLHINK_					0	0	0		nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7796630859375	2	490.779816	979.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.105	1	22.105	21.605	22.605	0								0	0	0	0.1027	1	3044	3044		45.7	21.679	1				2911	1352	1513	1513	3676	3676					0.054488761630864246
ATSPLHINK	9	Unmodified	_ATSPLHINK_					0	0	0		nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7797546386719	2	490.779816	979.545079	0.28838	0.00014153	-1.449	-0.00071114	-1.1606	-0.0005696	490.77960763433487	22.221	0.84457	22.12	21.682	22.527	-0.10034					54	30	3	0	0	0	0.037019	1	3074	3074		57.722	30.093	1	192030			2912	1352	1513	1513	3677	3677					0.054488761630864246
ATSPLHINK	9	Unmodified	_ATSPLHINK_					0	0	0		nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.779541015625	2	490.779816	979.545079	0.16136	7.919E-05	-1.1877	-0.00058288	-1.0263	-0.00050369	490.7797243715916	22.171	0.98338	22.121	21.661	22.645	-0.049377					55	34	3	0	0	0	0.16283	1	3062	3062		29.082	10.947	1	220680			2913	1352	1513	1513	3678	3678					0.054488761630864246
ATSQQIFGAVK	11	Unmodified	_ATSQQIFGAVK_					0	0	0		APOOL|p.T242Sfs*19|1|0.58|ENSG00000155008|chrX:85087593-85087596|CAAC/-|frameshift_variant;ENSG00000155008|ENST00000373173|APOOL	APOOL|p.T242Sfs*19|1|0.58|ENSG00000155008|chrX:85087593-85087596|CAAC/-|frameshift_variant	APOOL|p.T242Sfs*19|1|0.58|ENSG00000155008|chrX:85087593-85087596|CAAC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.2660522460938	2	575.316763	1148.61897	0.14422	8.297E-05	-0.46659	-0.00026844	-0.32237	-0.00018547	575.3161984648067	40.063	0.24752	40.063	39.914	40.161	0					13	8	2	0	0	0	0.3245	1	8522	8522		17.443	4.9111	1	101640			2914	50	1514	1514	3679	3679					0.05060799534749094
ATSSTLVSK	9	Unmodified	_ATSSTLVSK_					0	0	0		ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.25042724609375	2	447.250557	892.486562	0.1882	8.4173E-05	-0.46799	-0.00020931	-0.27979	-0.00012514	447.25021300877756	16.814	0.87622	16.814	16.548	17.424	0					67	30	3	0	0	0	0.07944	1	1446	1446		41.956	23.809	1	398150			2915	9453	1515	1515	3680	3680					0.036017747979599335
ATSSTLVSK	9	Unmodified	_ATSSTLVSK_					0	0	0		ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	ENST00000332782.6_1_12:57640633-57642538:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.7610778808594	2	447.250557	892.486562	-0.026655	-1.1922E-05	-0.21549	-9.6379E-05	-0.24215	-0.0001083	447.25032512913344	16.927	0.96033	16.813	16.532	17.492	-0.11434					74	34	3	0	0	0	0.30459	1	1567	1567		8.1555	8.1555	1	510060			2916	9453	1515	1515	3681	3681					0.036017747979599335
ATSTAVISGV	10	Unmodified	_ATSTAVISGV_					0	0	0		ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.7584228515625	2	453.250557	904.486562	0.11857	5.3744E-05	1.1913	0.00053995	1.3099	0.00059369	453.25106028007764	23.934	0.14371	23.862	23.791	23.935	-0.072559					5	4	2	0	0	0	0.31691	1	3604	3604		9.3831	2.0939	1	45878			2917	8429	1516	1516	3682	3682					0.030497747979779888
ATSTGGIVNK	10	Unmodified	_ATSTGGIVNK_					0	0	0		ENST00000534183.5_1_11:62105600-62156860:+|nuORF;nc|ENSG00000162174|Q7L266-2|ASRGL1;ENSG00000162174|ENST00000415229|ASRGL1	ENST00000534183.5_1_11:62105600-62156860:+|nuORF	ENST00000534183.5_1_11:62105600-62156860:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2705993652344	2	474.261456	946.50836	0.083984	3.9831E-05	-0.85948	-0.00040762	-0.77549	-0.00036779	474.2611201563935	16.945	0.61834	16.945	16.749	17.368	0					44	21	4	0	0	0	0.15532	1	1472	1472		61.602	28.816	1	347890			2918	5551	1517	1517	3683	3683					0.032965795465202063
ATSTGGIVNK	10	Unmodified	_ATSTGGIVNK_					0	0	0		ENST00000534183.5_1_11:62105600-62156860:+|nuORF;nc|ENSG00000162174|Q7L266-2|ASRGL1;ENSG00000162174|ENST00000415229|ASRGL1	ENST00000534183.5_1_11:62105600-62156860:+|nuORF	ENST00000534183.5_1_11:62105600-62156860:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.2610778808594	2	474.261456	946.50836	0.037293	1.7687E-05	-0.86346	-0.00040951	-0.82617	-0.00039182	474.26110025500856	17.08	0.72108	16.962	16.746	17.467	-0.11739					51	25	4	0	0	0	0.099352	1	1543	1543		74.2	46.571	1	337190			2919	5551	1517	1517	3684	3684					0.032965795465202063
ATSTGGIVNK	10	Unmodified	_ATSTGGIVNK_					0	0	0		ENST00000534183.5_1_11:62105600-62156860:+|nuORF;nc|ENSG00000162174|Q7L266-2|ASRGL1;ENSG00000162174|ENST00000415229|ASRGL1	ENST00000534183.5_1_11:62105600-62156860:+|nuORF	ENST00000534183.5_1_11:62105600-62156860:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2610778808594	2	474.261456	946.50836	0.30592	0.00014508	-0.8827	-0.00041863	-0.57679	-0.00027355	474.2610076363445	17.021	0.65994	16.961	16.784	17.444	-0.060429					45	23	3	0	0	0	0.12775	1	1523	1523		67.838	33.436	1	351060			2920	5551	1517	1517	3685	3685					0.032965795465202063
ATSVITIVK	9	Unmodified	_ATSVITIVK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2946472167969	2	466.294768	930.574983	-0.17764	-8.2834E-05	0.3886	0.0001812	0.21096	9.8367E-05	466.29482598251656	40.997	0.75328	40.997	40.688	41.441	0					81	27	4	0	0	0	0.003673	3	8756	8756;8804;8849		96.936	43.103	1	4256800			2921	7925	1518	1518	3686;3687;3688	3686					0.10691815108430092
ATSVITIVK	9	Unmodified	_ATSVITIVK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2947082519531	2	466.294768	930.574983	0.0734	3.4226E-05	-0.036898	-1.7205E-05	0.036503	1.7021E-05	466.29463935176994	40.91	0.76683	41.002	40.718	41.484	0.09267					83	28	4	0	0	0	0.003673	3	8739	8739;8784;8834		96.936	43.103	1	4076800			2922	7925	1518	1518	3689;3690;3691	3689					0.10691815108430092
ATSVITIVK	9	Unmodified	_ATSVITIVK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.29473876953125	2	466.294768	930.574983	0.0039417	1.838E-06	0.13903	6.4829E-05	0.14297	6.6667E-05	466.2946948922794	40.867	0.75888	40.966	40.666	41.425	0.099403					81	27	4	0	0	0	0.0023895	3	8753	8710;8753;8804		107.1	44.527	1	4250400			2923	7925	1518	1518	3692;3693;3694	3693					0.10691815108430092
ATTAIAIHR	9	Unmodified	_ATTAIAIHR_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.2801208496094	2	477.279983	952.545414	-0.076555	-3.6538E-05	0.37887	0.00018083	0.30232	0.00014429	477.28014634519366	22.838	0.63441	22.838	22.563	23.197	0					54	21	3	0	0	0	0.03069	2	3275	3275;3328		60.074	36.053	1	351400			2924	11482	1519	1519	3695;3696	3695					0.06724295882952447
ATTAIAIHR	9	Unmodified	_ATTAIAIHR_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.2802429199219	2	477.279983	952.545414	0.026553	1.2673E-05	0.07243	3.4569E-05	0.098982	4.7242E-05	477.2799941824528	22.939	0.62249	22.852	22.568	23.191	-0.087608					54	21	3	0	0	0	0.0079761	2	3289	3289;3343		82.529	49.744	1	405990			2925	11482	1519	1519	3697;3698	3697					0.06724295882952447
ATTAIAIHR	9	Unmodified	_ATTAIAIHR_					0	0	0		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	ENST00000522309.1_1_X:134185341-134186138:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.2801513671875	2	477.279983	952.545414	0.14734	7.0321E-05	-0.040839	-1.9492E-05	0.1065	5.0829E-05	477.2799806190788	22.924	0.6282	22.88	22.649	23.277	-0.044867					53	22	4	0	0	0	0.012386	1	3309	3309		75.761	43.455	1	361350			2926	11482	1519	1519	3699	3699					0.06724295882952447
ATTALPVPVT	10	Unmodified	_ATTALPVPVT_					0	0	0			REV__ENSG00000188039|ENST00000524140|NWD1	REV__ENSG00000188039|ENST00000524140|NWD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7741394042969	2	485.2844	968.554247	0.32763	0.000159	-3.0625	-0.0014862	-2.7349	-0.0013272	485.2834399203024	40.717	0.45729	40.717	40.445	40.902	0					27	16	2	0	0	0	0.28434	1	8627	8627		25.399	10.561	1	166950	+		2927	18537	1520	1520	3700	3700					0.06871224728752168
ATTALPVPVT	10	Unmodified	_ATTALPVPVT_					0	0	0			REV__ENSG00000188039|ENST00000524140|NWD1	REV__ENSG00000188039|ENST00000524140|NWD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	485.2844	968.554247	0.4014	0.00019479	-2.0341	-0.0009871	-1.6327	-0.0007923	485.2835251156072	40.596	0.4525	40.689	40.502	40.954	0.09267	-0.014122	0.00037144	NaN	25.399	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199800	+		2928	18537	1520	1520							0.06871224728752168
ATTGELAANK	10	Unmodified	_ATTGELAANK_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2585754394531	2	488.258914	974.503274	0.20209	9.867E-05	-0.10687	-5.2178E-05	0.095221	4.6492E-05	488.25884579352015	16.567	1.7113	16.567	16.008	17.719	0					141	59	5	0	0	0	0.21126	2	1473	1473;1517		31.268	12.728	1	1104200			2929	7110	1521	1521	3701;3702	3701					0.015002756838953246
ATTGELAANK	10	Unmodified	_ATTGELAANK_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2585144042969	2	488.258914	974.503274	0.092107	4.4972E-05	0.084911	4.1458E-05	0.17702	8.643E-05	488.25893277313287	16.696	1.866	16.582	15.921	17.787	-0.11434					155	65	3	0	0	0	0.011792	1	1551	1551		80.676	34.976	1	1158800			2930	7110	1521	1521	3703	3703					0.015002756838953246
ATTGELAANK	10	Unmodified	_ATTGELAANK_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2583923339844	2	488.258914	974.503274	0.31248	0.00015257	-0.15987	-7.806E-05	0.1526	7.451E-05	488.2588195027524	16.654	2.1389	16.592	15.943	18.082	-0.062534					169	75	4	0	0	0	0.02128	2	1499	1499;1545		70.332	28.376	1	1166400			2931	7110	1521	1521	3704;3705	3704					0.015002756838953246
ATTLPIRNK	9	Unmodified	_ATTLPIRNK_					0	0	0		nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17	nc|ENSG00000132466|O75179-3|ANKRD17	nc|ENSG00000132466|O75179-3|ANKRD17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.3088684082031	2	507.308741	1012.60293	0.33137	0.00016811	0.10921	5.5404E-05	0.44059	0.00022351	507.3087510163116	21.579	0.87589	21.579	21.169	22.045	0					76	31	3	0	0	0	0.0054984	2	2888	2888;2935		86.332	19.875	1	622870			2932	3637	1522	1522	3706;3707	3706					0.09713138088511641
ATTLPIRNK	9	Unmodified	_ATTLPIRNK_					0	0	0		nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17	nc|ENSG00000132466|O75179-3|ANKRD17	nc|ENSG00000132466|O75179-3|ANKRD17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.30902099609375	2	507.308741	1012.60293	0.3719	0.00018867	0.16027	8.1306E-05	0.53217	0.00026998	507.3087634663058	21.706	0.82965	21.605	21.244	22.074	-0.10034					80	29	4	0	0	0	0.0054984	1	2932	2932		86.332	30.155	1	637640			2933	3637	1522	1522	3708	3708					0.09713138088511641
ATTLPIRNK	9	Unmodified	_ATTLPIRNK_					0	0	0		nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17	nc|ENSG00000132466|O75179-3|ANKRD17	nc|ENSG00000132466|O75179-3|ANKRD17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.30902099609375	2	507.308741	1012.60293	0.25956	0.00013168	0.22314	0.0001132	0.4827	0.00024488	507.3088476840094	21.707	0.99693	21.658	21.207	22.204	-0.049377					91	35	4	0	0	0	0.0054984	1	2929	2929		86.332	27.653	1	654020			2934	3637	1522	1522	3709	3709					0.09713138088511641
ATTLPSTQFNR	11	Unmodified	_ATTLPSTQFNR_					0	0	0			REV__ENST00000264956.10_2_4:5813500-5814718:+|nuORF	REV__ENST00000264956.10_2_4:5813500-5814718:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2268981933594	3	412.55081	1234.6306	-0.1126	-4.6455E-05	4.322	0.0017831	4.2094	0.0017366	412.5520273737798	14.274	0.45689	14.169	13.816	14.273	-0.10466					16	15	2	0	0	0	0.33122	1	658	658		7.0371	2.5082	1	33270	+		2935	19643	1523	1523	3710	3710					0.02266996558091705
ATTPELLLK	9	Unmodified	_ATTPELLLK_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.8158874511719	2	493.30005	984.585547	0.47242	0.00023305	-0.03423	-1.6886E-05	0.43819	0.00021616	493.2999245907887	46.722	0.70444	46.722	46.458	47.162	0					44	24	3	0	0	0	0.063853	3	10542	10542;10586;10639		47.749	20.865	1	1112500			2936	276	1524	1524	3711;3712;3713	3711					0.09263797762866943
ATTPELLLK	9	Unmodified	_ATTPELLLK_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.8158264160156	2	493.30005	984.585547	0.56681	0.00027961	-0.086763	-4.28E-05	0.48005	0.00023681	493.2999666486427	46.619	0.62188	46.671	46.44	47.062	0.052574					45	22	3	0	0	0	0.041175	2	10518	10518;10562		56.177	33.029	1	1188400			2937	276	1524	1524	3714;3715	3714					0.09263797762866943
ATTPELLLK	9	Unmodified	_ATTPELLLK_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.8157043457031	2	493.30005	984.585547	0.37486	0.00018492	0.33731	0.00016639	0.71217	0.00035131	493.30004926574225	46.624	0.57169	46.678	46.492	47.064	0.054371					41	19	3	0	0	0	0.12642	3	10526	10526;10571;10582		34.402	11.665	1	1129900			2938	276	1524	1524	3716;3717;3718	3716					0.09263797762866943
ATTRIVRYV	9	Unmodified	_ATTRIVRYV_					0	0	0			REV__nc|ENSG00000070729|Q14028-2|CNGB1	REV__nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.9097290039062	2	539.822015	1077.62948	0.60584	0.00032704	-0.94741	-0.00051143	-0.34157	-0.00018439	539.8215197797371	29.913	0.22836	29.913	29.86	30.088	0					11	7	2	0	0	0	0.26031	1	5458	5458		3.5965	0.60125	1	52067	+		2939	13731	1525	1525	3719	3719					0.09376826979860198
ATTSLSLRR	9	Unmodified	_ATTSLSLRR_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000465703.5_1_6:31926942-31928873:+|nuORF;ENST00000488648.5_1_6:31926942-31929152:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7960205078125	2	502.795998	1003.57744	0.15853	7.9707E-05	-0.045237	-2.2745E-05	0.11329	5.6962E-05	502.79593052480783	23.256	0.52205	23.168	22.937	23.459	-0.087608					31	18	2	0	0	0	0.29176	1	3410	3410		10.074	3.8681	1	228280			2940	8219	1526	1526	3720	3720					0.07579663566093586
ATTSVITIVK	10	Unmodified	_ATTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8186645507812	2	516.818607	1031.62266	0.34426	0.00017792	-0.36548	-0.00018889	-0.021225	-1.097E-05	516.8182564352668	43.052	0.54667	43.052	42.786	43.333	0					45	19	3	0	0	0	0.0012219	2	9422	9404;9422		117.84	74.065	1	1041600			2941	8084	1527	1527	3721;3722	3722					0.108114693086236
ATTSVITIVK	10	Unmodified	_ATTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.8185424804688	2	516.818607	1031.62266	0.33212	0.00017165	-0.81194	-0.00041963	-0.47982	-0.00024798	516.8180999788539	42.987	0.65624	43.072	42.834	43.49	0.085201					45	23	3	0	0	0	0.00042009	1	9383	9383		128.57	74.74	1	987820			2942	8084	1527	1527	3723	3723					0.108114693086236
ATTSVITIVK	10	Unmodified	_ATTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.8186645507812	2	516.818607	1031.62266	0.054633	2.8235E-05	-0.44268	-0.00022879	-0.38805	-0.00020055	516.8182120512495	42.924	0.64493	43.016	42.772	43.417	0.091362					44	23	3	0	0	0	0.0034473	1	9365	9365		100.71	56.936	1	1036300			2943	8084	1527	1527	3724	3724					0.108114693086236
ATTVWLMVRLA	11	Unmodified	_ATTVWLMVRLA_					0	0	0			REV__nc|ENSG00000102539|O43193-2|MLNR	REV__nc|ENSG00000102539|O43193-2|MLNR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8599243164062	2	630.860283	1259.70601	0.54665	0.00034486	-0.40531	-0.00025569	0.14134	8.9165E-05	630.8595479668895	85.924	2.6627	85.924	84.946	87.609	0					263	106	4	0	0	0	0.46277	1	22633	22633		2.9952	0	1	2656100	+		2944	14324	1528	1528	3725	3725					0.08654882484825066
ATTWFPKQ	8	Unmodified	_ATTWFPKQ_					0	0	0		ENSG00000008513|ENST00000522652|ST3GAL1;ENST00000522204.1_1_8:134478135-134488174:-|nuORF	ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.75677490234375	2	489.75581	977.497067	-0.02299	-1.1259E-05	1.1542	0.00056525	1.1312	0.00055399	489.75638292997496	14.154	0.37189	14.088	13.917	14.289	-0.066068					30	12	3	0	0	0	0.45307	1	682	682		4.756	1.1595	1	331940			2945	399	1529	1529	3726	3726					0.007418022430442761
ATTWILKLSKL	11	Unmodified	_ATTWILKLSKL_					0	0	0		ENST00000358344.7_1_5:177637895-177638144:+|nuORF	ENST00000358344.7_1_5:177637895-177638144:+|nuORF	ENST00000358344.7_1_5:177637895-177638144:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.2155456542969	3	425.267463	1272.78056	0.17096	7.2703E-05	-0.44079	-0.00018745	-0.26983	-0.00011475	425.2671942893248	84.829	0.38229	84.829	84.612	84.994	0					19	14	2	0	0	0	0.33348	1	22221	22221		0.40827	0.078994	1	199860			2946	9648	1530	1530	3727	3727					0.15507968567817443
ATTWILKLSKL	11	Unmodified	_ATTWILKLSKL_					0	0	0		ENST00000358344.7_1_5:177637895-177638144:+|nuORF	ENST00000358344.7_1_5:177637895-177638144:+|nuORF	ENST00000358344.7_1_5:177637895-177638144:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	425.267463	1272.78056	0.18049	7.6756E-05	-0.39243	-0.00016689	-0.21194	-9.0133E-05	425.26725135709415	84.855	0.3606	84.842	84.656	85.017	-0.01284	0.0067343	2.1014E-05	NaN	0.40827	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140100			2947	9648	1530	1530							0.15507968567817443
ATVAAILQH	9	Unmodified	_ATVAAILQH_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.7478332519531	2	462.269084	922.523616	-0.19986	-9.2389E-05	-0.15961	-7.3783E-05	-0.35947	-0.00016617	462.2689962429746	42.234	0.57178	42.234	41.996	42.567	0					29	20	2	0	0	0	0.082808	1	9174	9174		49.933	6.0747	1	480030			2948	7362	1531	1531	3728	3728					0.0592549113438281
ATVAAILQH	9	Unmodified	_ATVAAILQH_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.7478332519531	2	462.269084	922.523616	0.18052	8.3451E-05	-0.65007	-0.00030051	-0.46954	-0.00021706	462.26874089325315	42.099	0.58132	42.185	42.009	42.591	0.085197					27	20	2	0	0	0	0.040595	1	9097	9097		74.929	24.074	1	399680			2949	7362	1531	1531	3729	3729					0.0592549113438281
ATVAAILQH	9	Unmodified	_ATVAAILQH_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.7477722167969	2	462.269084	922.523616	0.34838	0.00016104	-0.992	-0.00045857	-0.64362	-0.00029753	462.26864499883504	42.035	0.42558	42.126	41.929	42.354	0.091362					23	14	2	0	0	0	0.09064	1	9115	9115		47.749	3.8904	1	364640			2950	7362	1531	1531	3730	3730					0.0592549113438281
ATVAALQEK	9	Unmodified	_ATVAALQEK_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.76641845703125	2	465.766374	929.518196	-0.032916	-1.5331E-05	0.095065	4.4278E-05	0.062149	2.8947E-05	465.76641194245263	24.742	0.53167	24.742	24.454	24.986	0					29	17	2	0	0	0	0.01251	1	3832	3832		75.571	26.016	1	154720			2951	3048	1532	1532	3731	3731					0.05061767551910634
ATVAALQEK	9	Unmodified	_ATVAALQEK_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.161376953125	2	465.766374	929.518196	-0.049402	-2.301E-05	0.017555	8.1764E-06	-0.031848	-1.4834E-05	465.76641371612266	24.81	0.56849	24.754	24.43	24.999	-0.055931					39	19	3	0	0	0	0.20521	1	3838	3838		24.882	0	1	186530			2952	3048	1532	1532	3732	3732					0.05061767551910634
ATVAALQEK	9	Unmodified	_ATVAALQEK_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.16143798828125	2	465.766374	929.518196	-0.07217	-3.3614E-05	0.25498	0.00011876	0.18281	8.5147E-05	465.7663990592645	24.801	0.5865	24.769	24.485	25.072	-0.031408					34	19	2	0	0	0	0.074421	1	3833	3833		59.052	29.212	1	130780			2953	3048	1532	1532	3733	3733					0.05061767551910634
ATVAEKTK	8	Unmodified	_ATVAEKTK_					0	0	0		nc|ENSG00000145335|P37840-2|SNCA;ENSG00000145335|ENST00000394991|SNCA	nc|ENSG00000145335|P37840-2|SNCA	nc|ENSG00000145335|P37840-2|SNCA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.26971435546875	2	424.247818	846.481082	-0.21372	-9.0669E-05	0.010943	4.6426E-06	-0.20277	-8.6026E-05	424.24780918446675	28.781	0.73693	28.781	28.524	29.261	0.0004673					57	26	3	0	0	0	0.30795	1	5105	5105		18.146	0	1	700390			2954	4642	1533	1533	3734	3734					0.05170096006145286
ATVAGVHVK	9	Unmodified	_ATVAGVHVK_					0	0	0		ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2637939453125	2	441.263802	880.513051	0.045874	2.0243E-05	-0.032105	-1.4167E-05	0.01377	6.076E-06	441.2636994306917	19.729	0.91042	19.729	19.375	20.285	0					88	33	4	0	0	0	0.0010463	3	2313	2313;2356;2406		122.18	72.246	1	1331300			2955	8478	1534	1534	3735;3736;3737	3735					0.06801508479941276
ATVAGVHVK	9	Unmodified	_ATVAGVHVK_					0	0	0		ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2638244628906	2	441.263802	880.513051	0.15348	6.7723E-05	-0.13332	-5.8827E-05	0.02016	8.8959E-06	441.2636584901046	19.862	0.79178	19.746	19.461	20.253	-0.11592					88	27	4	0	0	0	6.1526E-05	1	2382	2382		147.06	78.978	1	1579800			2956	8478	1534	1534	3738	3738					0.06801508479941276
ATVAGVHVK	9	Unmodified	_ATVAGVHVK_					0	0	0		ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	ENSG00000232838|ENST00000432901|PET117	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2637939453125	2	441.263802	880.513051	0.29537	0.00013034	-0.25028	-0.00011044	0.045098	1.99E-05	441.2636135015527	19.798	0.72515	19.743	19.423	20.149	-0.055693					81	25	4	0	0	0	1.2283E-05	2	2351	2351;2395		155.03	86.945	1	1589000			2957	8478	1534	1534	3739;3740	3739					0.06801508479941276
ATVALVYQREL	11	Unmodified	_ATVALVYQREL_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	631.8590087890625	2	631.858795	1261.70304	0.32425	0.00020488	-0.015208	-9.6092E-06	0.30904	0.00019527	631.8586873527574	67.311	0.68111	67.311	67.076	67.757	0					63	23	4	0	0	0	0.082028	3	16922	16875;16922;16974		43.982	10.537	1	1581500	+		2958	16149	1535	1535	3741;3742;3743	3742					0.08265330631661527
ATVALVYQREL	11	Unmodified	_ATVALVYQREL_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	631.8587646484375	2	631.858795	1261.70304	0.26798	0.00016933	0.070538	4.457E-05	0.33852	0.0002139	631.8587986364834	67.191	0.75777	67.269	67.012	67.77	0.078041					72	26	4	0	0	0	0.028812	2	16835	16835;16884		59.368	19.129	1	1445100	+		2959	16149	1535	1535	3744;3745	3744					0.08265330631661527
ATVALVYQREL	11	Unmodified	_ATVALVYQREL_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.8589477539062	2	631.858795	1261.70304	0.2674	0.00016896	0.038705	2.4456E-05	0.3061	0.00019341	631.8588064521144	67.344	0.66765	67.327	67.06	67.727	-0.016296					62	22	4	0	0	0	0.056319	2	16867	16867;16922		51.415	11.176	1	1596200	+		2960	16149	1535	1535	3746;3747	3746					0.08265330631661527
ATVALVYQREL	11	Unmodified	_ATVALVYQREL_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	631.858795	1261.70304	0.32425	0.00020488	-0.015208	-9.6092E-06	0.30904	0.00019527	631.8586873527574	67.311	0.68111	67.311	67.076	67.757	0	0.0085266	-5.7353E-05	NaN	59.368	63	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1581500	+		2961	16149	1535	1535							0.08265330631661527
ATVALVYQREL	11	Unmodified	_ATVALVYQREL_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	631.858795	1261.70304	0.2674	0.00016896	0.038705	2.4456E-05	0.3061	0.00019341	631.8588064521144	67.344	0.66765	67.327	67.06	67.727	-0.016296	0.024824	1.0778E-05	NaN	59.368	62	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1596200	+		2962	16149	1535	1535							0.08265330631661527
ATVATFQTE	9	Unmodified	_ATVATFQTE_					0	0	0			REV__TBX10|p.L239Afs*2|1|0.05|ENSG00000167800|chr11:67632661-67632662|-/GC|frameshift_variant	REV__TBX10|p.L239Afs*2|1|0.05|ENSG00000167800|chr11:67632661-67632662|-/GC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7897033691406	2	484.24019	966.465826	0.20509	9.9312E-05	1.394	0.00067504	1.5991	0.00077436	484.24075487051937	28.819	0.14601	28.819	28.699	28.845	0					5	4	2	0	0	0	0.25949	1	5078	5078		4.897	1.3005	1	18294	+		2963	17414	1536	1536	3748	3748					-0.01874815581720668
ATVAVPLVGK	10	Unmodified	_ATVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.80291748046875	2	477.80276	953.590967	0.29727	0.00014203	0.063333	3.026E-05	0.3606	0.0001723	477.80276774886113	45.319	1.2033	45.319	44.771	45.974	0					91	43	4	0	0	0	0.0029823	2	10133	10133;10172		103.42	49.587	1	5233900			2964	4020	1537	1537	3749;3750	3749					0.11231521345337114
ATVAVPLVGK	10	Unmodified	_ATVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.8028259277344	2	477.80276	953.590967	0.47931	0.00022901	-0.86505	-0.00041332	-0.38575	-0.00018431	477.80262356484354	45.288	0.95532	45.348	44.97	45.926	0.059834					98	33	4	0	0	0	0.0014935	3	10106	10066;10106;10152		114.2	66.607	1	5830700			2965	4020	1537	1537	3751;3752;3753	3752					0.11231521345337114
ATVAVPLVGK	10	Unmodified	_ATVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.80291748046875	2	477.80276	953.590967	0.36247	0.00017319	-0.69834	-0.00033367	-0.33587	-0.00016048	477.8026913903069	45.273	0.97314	45.338	44.978	45.951	0.065048					111	35	5	0	0	0	0.001757	3	10106	10059;10106;10155		110.67	56.842	1	5269000			2966	4020	1537	1537	3754;3755;3756	3755					0.11231521345337114
ATVDSYHLY	9	Unmodified	_ATVDSYHLY_					0	0	0		ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.3160400390625	2	534.753464	1067.49238	0.68162	0.0003645	-1.3749	-0.00073524	-0.69329	-0.00037074	534.7529662601924	44.938	0.52671	44.938	44.739	45.266	0					22	18	2	0	0	0	0.24688	1	10004	10004		14.838	7.549	1	215310			2967	61	1538	1538	3757	3757					-0.03867126690374789
ATVDSYHLY	9	Unmodified	_ATVDSYHLY_					0	0	0		ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.3158569335938	2	534.753464	1067.49238	0.46065	0.00024633	-0.10204	-5.4564E-05	0.35861	0.00019177	534.7534222417149	44.694	0.38049	44.763	44.599	44.979	0.068573					17	13	2	0	0	0	0.22596	1	9900	9900		21.747	17.218	1	214780			2968	61	1538	1538	3758	3758					-0.03867126690374789
ATVDSYHLY	9	Unmodified	_ATVDSYHLY_					0	0	0		ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.3160400390625	2	534.753464	1067.49238	0.6289	0.0003363	0.14182	7.5839E-05	0.77072	0.00041214	534.7532959200246	44.65	0.43055	44.725	44.531	44.962	0.075047					26	15	2	0	0	0	0.20651	1	9895	9895		20.454	11.708	1	173050			2969	61	1538	1538	3759	3759					-0.03867126690374789
ATVETTIAR	9	Unmodified	_ATVETTIAR_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;LIMCH1|p.Q590Kfs*9|1|0.09|ENSG00000064042|chr4:41650493-41650494|-/AAAGACTGTAACAAAA|frameshift_variant;LIMCH1|p.Q607Hfs*8|1|0.08|ENSG00000064042|chr4:41650547-41650548|-/TGCTATATAT|frameshift_variant;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2698059082031	2	481.269281	960.52401	0.43763	0.00021062	-0.52315	-0.00025177	-0.085517	-4.1157E-05	481.269100949148	26.715	0.47506	26.696	26.475	26.95	-0.019482					34	16	3	0	0	0	0.048637	1	4432	4432		53.404	29.383	1	131380			2970	783	1539	1539	3760	3760					0.04216866063575253
ATVGKATGFLK	11	Unmodified	_ATVGKATGFLK_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.3322143554688	2	546.824224	1091.63389	0.4931	0.00026964	-1.1145	-0.00060946	-0.62144	-0.00033982	546.8236260340605	30.549	0.41891	30.549	30.282	30.701	0					28	14	3	0	0	0	0.32774	1	5589	5589		13.519	3.4447	1	150680			2971	3570	1540	1540	3761	3761					0.09174291402746348
ATVIFIVTK	9	Unmodified	_ATVIFIVTK_					0	0	0		ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.3131103515625	2	496.312961	990.611368	0.65567	0.00032542	-0.30216	-0.00014997	0.35351	0.00017545	496.31270777605533	54.148	0.90275	54.148	53.834	54.736	0					83	32	4	0	0	0	0.0008224	2	12810	12810;12855		125.04	71.205	1	3033500			2972	6528	1541	1541	3762;3763	3762					0.11568692005141656
ATVIFIVTK	9	Unmodified	_ATVIFIVTK_					0	0	0		ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3130798339844	2	496.312961	990.611368	0.54603	0.000271	-0.20116	-9.9838E-05	0.34487	0.00017116	496.3127531456008	54.108	0.84784	54.171	53.902	54.75	0.063202					83	31	4	0	0	0	0.0008224	2	12791	12791;12837		125.04	67.316	1	3129100			2973	6528	1541	1541	3764;3765	3764					0.11568692005141656
ATVIFIVTK	9	Unmodified	_ATVIFIVTK_					0	0	0		ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3131103515625	2	496.312961	990.611368	0.52104	0.0002586	-0.060357	-2.9956E-05	0.46068	0.00022864	496.31280966173784	54.227	0.93031	54.211	53.865	54.796	-0.015923					77	32	4	0	0	0	3.4202E-05	2	12817	12817;12865		151.48	75.719	1	3019900			2974	6528	1541	1541	3766;3767	3766					0.11568692005141656
ATVIFVASQK	10	Unmodified	_ATVIFVASQK_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7760620117188	2	532.310949	1062.60735	0.48734	0.00025942	-1.6384	-0.00087214	-1.1511	-0.00061272	532.3102538749557	40.787	0.54311	40.787	40.526	41.069	0					32	19	2	0	0	0	0.2005	1	8727	8727		43.982	21.246	1	220700			2975	4522	1542	1542	3768	3768					0.07854602511406483
ATVIFVASQK	10	Unmodified	_ATVIFVASQK_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	532.310949	1062.60735	0.49957	0.00026593	-0.77132	-0.00041058	-0.27175	-0.00014466	532.3108025825392	40.73	0.36896	40.823	40.585	40.954	0.09267	0.040476	0.00017675	NaN	43.982	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240330			2976	4522	1542	1542							0.07854602511406483
ATVIPHLM	8	Unmodified	_ATVIPHLM_					0	0	0		nc|ENSG00000114098|Q8IUR7-6|ARMC8;nc|ENSG00000114098|Q8IUR7-8|ARMC8;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8	nc|ENSG00000114098|Q8IUR7-6|ARMC8	nc|ENSG00000114098|Q8IUR7-6|ARMC8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.26361083984375	2	441.249306	880.484059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.063	1	19.947	19.447	20.447	-0.11592								0	0	0	0.35014	1	2425	2425		14.582	0	1				2977	2545	1543	1543	3769	3769					0.03903647859317516
ATVITTEKR	9	Unmodified	_ATVITTEKR_					0	0	0		ENST00000476701.5_1_7:4169443-4308379:+|nuORF;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1	ENST00000476701.5_1_7:4169443-4308379:+|nuORF	ENST00000476701.5_1_7:4169443-4308379:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.79833984375	2	509.798206	1017.58186	0.17493	8.918E-05	0.028477	1.4517E-05	0.20341	0.0001037	509.79827904165154	16.232	0.45322	16.232	16.008	16.461	0					43	15	4	0	0	0	0.032589	1	1274	1274		59.368	2.1193	1	229780			2978	4719	1544	1544	3770	3770					0.07377127988991106
ATVITTEKR	9	Unmodified	_ATVITTEKR_					0	0	0		ENST00000476701.5_1_7:4169443-4308379:+|nuORF;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1	ENST00000476701.5_1_7:4169443-4308379:+|nuORF	ENST00000476701.5_1_7:4169443-4308379:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7983093261719	2	509.798206	1017.58186	0.16889	8.6098E-05	0.04095	2.0876E-05	0.20984	0.00010697	509.7982309356418	16.279	0.43544	16.217	16.006	16.442	-0.062534					38	14	4	0	0	0	0.037019	1	1294	1294		57.722	2.2192	1	208510			2979	4719	1544	1544	3771	3771					0.07377127988991106
ATVKEQIVK	9	Unmodified	_ATVKEQIVK_					0	0	0		ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3347473144531	2	508.310949	1014.60735	0.13209	6.7144E-05	0.60964	0.00030989	0.74173	0.00037703	508.3113596281325	18.742	0.5607	18.742	18.535	19.095	0					32	19	2	0	0	0	0.23749	1	2042	2042		20.415	1.1575	1	102960			2980	3693	1545	1545	3772	3772					0.1006260251143658
ATVKEQIVK	9	Unmodified	_ATVKEQIVK_					0	0	0		ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.3347473144531	2	508.310949	1014.60735	0.098891	5.0267E-05	0.90477	0.00045991	1.0037	0.00051017	508.3114537134254	18.923	0.52868	18.806	18.556	19.084	-0.11739					34	18	3	0	0	0	0.2422	1	2080	2080		19.362	1.2156	1	78937			2981	3693	1545	1545	3773	3773					0.1006260251143658
ATVKEQIVK	9	Unmodified	_ATVKEQIVK_					0	0	0		ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.33477783203125	2	508.310949	1014.60735	-0.0024048	-1.2224E-06	0.65849	0.00033472	0.65608	0.0003335	508.31137389775535	18.898	0.57157	18.84	18.57	19.142	-0.058174					35	19	2	0	0	0	0.24787	1	2068	2068		15.248	1.3424	1	85620			2982	3693	1545	1545	3774	3774					0.1006260251143658
ATVKLEHAK	9	Unmodified	_ATVKLEHAK_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.79620361328125	2	498.795466	995.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.666	1	13.567	13.067	14.067	-0.099291								0	0	0	0.25455	1	495	495		4.897	0.141	1				2983	2840	1546	1546	3775	3775					0.07841449197178463
ATVKVPSVK	9	Unmodified	_ATVKVPSVK_					0	0	0			REV__nc|ENSG00000122136|Q9NY56-2|OBP2A	REV__nc|ENSG00000122136|Q9NY56-2|OBP2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.1615905761719	2	464.794935	927.575317	-0.12323	-5.7278E-05	0.1517	7.0509E-05	0.028467	1.3231E-05	464.7948998954312	24.088	0.66121	24.088	23.734	24.395	0					49	22	3	0	0	0	0.23784	1	3601	3601		13.906	2.2658	1	162960	+		2984	15149	1547	1547	3776	3776					0.1086323482828675
ATVLSLNEEYF	11	Unmodified	_ATVLSLNEEYF_					0	0	0			REV__ENSG00000121957|ENST00000264126|GPSM2	REV__ENSG00000121957|ENST00000264126|GPSM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.7556457519531	3	429.215204	1284.62378	-0.13451	-5.7735E-05	1.0883	0.00046712	0.9538	0.00040939	429.21572560450863	40.85	0.69994	40.85	40.526	41.225	0					62	25	3	0	0	0	0.32912	1	8673	8673		8.2864	0	1	517540	+		2985	15138	1548	1548	3777	3777					-0.007143611131596117
ATVLSLNEEYF	11	Unmodified	_ATVLSLNEEYF_					0	0	0			REV__ENSG00000121957|ENST00000264126|GPSM2	REV__ENSG00000121957|ENST00000264126|GPSM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.75567626953125	3	429.215204	1284.62378	0.060637	2.6026E-05	0.97208	0.00041723	1.0327	0.00044326	429.21563070733	40.427	0.65194	40.527	40.26	40.912	0.099407					61	23	4	0	0	0	0.3287	1	8580	8580		12.228	2.4633	1	699480	+		2986	15138	1548	1548	3778	3778					-0.007143611131596117
ATVLTTERK	9	Unmodified	_ATVLTTERK_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.25396728515625	2	509.798206	1017.58186	0.069919	3.5645E-05	0.26973	0.00013751	0.33965	0.00017315	509.798339133606	16.329	0.4607	16.215	15.987	16.448	-0.11434					27	15	2	0	0	0	0.21538	1	1321	1321		26.268	0	1	225780			2987	2298	1549	1549	3779	3779					0.07377127988991106
ATVMGPIDK	9	Unmodified	_ATVMGPIDK_					0	0	0			REV__ENST00000399640.3_1_8:134470495-134470690:-|nuORF	REV__ENST00000399640.3_1_8:134470495-134470690:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2391662597656	2	466.249503	930.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.934	1	20.881	20.381	21.381	-0.05291								0	0	0	0.22666	1	2687	2687		13.906	4.5586	1		+		2988	20694	1550	1550	3780	3780					0.016430227885052773
ATVNEIVLK	9	Unmodified	_ATVNEIVLK_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7978515625	2	493.797675	985.580796	0.58909	0.00029089	-0.25153	-0.0001242	0.33756	0.00016669	493.7975008815191	40.512	0.72734	40.512	40.283	41.01	0					63	26	3	0	0	0	0.003929	2	8637	8637;8684		94.909	24.577	1	961160			2989	2882	1551	1551	3781;3782	3781					0.08742913620096715
ATVNEIVLK	9	Unmodified	_ATVNEIVLK_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.797607421875	2	493.797675	985.580796	0.58914	0.00029092	-0.40704	-0.00020099	0.18211	8.9924E-05	493.797451746382	40.391	0.64881	40.483	40.176	40.824	0.09267					55	23	4	0	0	0	0.0058682	1	8591	8591		85.764	24.163	1	1093900			2990	2882	1551	1551	3783	3783					0.08742913620096715
ATVNEIVLK	9	Unmodified	_ATVNEIVLK_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7978820800781	2	493.797675	985.580796	0.47734	0.00023571	0.13915	6.871E-05	0.61648	0.00030442	493.79784808378804	40.356	0.90027	40.455	40.118	41.018	0.099407					67	32	3	0	0	0	0.003929	2	8576	8576;8625		94.909	24.577	1	910050			2991	2882	1551	1551	3784;3785	3784					0.08742913620096715
ATVPGLLKV	9	Unmodified	_ATVPGLLKV_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.29193115234375	2	449.292028	896.569503	0.28554	0.00012829	-0.43252	-0.00019433	-0.14698	-6.6037E-05	449.2917641869327	52.789	0.38566	52.789	52.574	52.96	0					28	13	3	0	0	0	0.034444	1	12425	12425		58.679	33.28	1	413490			2992	7144	1552	1552	3786	3786					0.11708136316622131
ATVPGLLKV	9	Unmodified	_ATVPGLLKV_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.29193115234375	2	449.292028	896.569503	0.39229	0.00017625	-0.42177	-0.0001895	-0.029475	-1.3243E-05	449.2917115775641	52.751	0.45844	52.801	52.579	53.037	0.050571					30	16	3	0	0	0	0.012929	1	12414	12414		74.929	40.827	1	489290			2993	7144	1552	1552	3787	3787					0.11708136316622131
ATVPGLLKV	9	Unmodified	_ATVPGLLKV_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.2920837402344	2	449.292028	896.569503	0.20553	9.2342E-05	-0.14503	-6.5161E-05	0.060498	2.7181E-05	449.29177443084194	52.837	0.37592	52.837	52.663	53.039	-0.00081253					29	13	3	0	0	0	0.012929	1	12438	12438		74.929	42.624	1	496570			2994	7144	1552	1552	3788	3788					0.11708136316622131
ATVTPSPVK	9	Unmodified	_ATVTPSPVK_					0	0	0		nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2633361816406	2	450.263468	898.512382	-0.029911	-1.3468E-05	0.33542	0.00015103	0.30551	0.00013756	450.2635094449565	23.068	1.0369	23.068	22.763	23.8	0					60	35	3	0	0	0	0.00078391	2	3306	3306;3355		125.53	53.607	1	1760800			2995	902	1553	1553	3789;3790	3789					0.05906669040234647
ATVTPSPVK	9	Unmodified	_ATVTPSPVK_					0	0	0		nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2633056640625	2	450.263468	898.512382	-0.01774	-7.9877E-06	0.25528	0.00011494	0.23754	0.00010695	450.2634736056295	23.151	1.1015	23.064	22.736	23.837	-0.087608					67	38	3	0	0	0	0.00019464	2	3336	3336;3384		133.05	61.13	1	1902400			2996	902	1553	1553	3791;3792	3791					0.05906669040234647
ATVTPSPVK	9	Unmodified	_ATVTPSPVK_					0	0	0		nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.26361083984375	2	450.263468	898.512382	0.16689	7.5146E-05	-1.1626	-0.00052348	-0.99572	-0.00044833	450.26342398181816	23.145	1.2258	23.1	22.817	24.043	-0.044867					95	43	3	0	0	0	0.00078391	4	3374	3326;3374;3417;3427		125.53	53.607	1	1932000			2997	902	1553	1553	3793;3794;3795;3796	3794					0.05906669040234647
ATVVRVTQDLL	11	Unmodified	_ATVVRVTQDLL_					0	0	0			REV__ENSG00000164944|ENST00000297591|VIRMA;REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	REV__ENSG00000164944|ENST00000297591|VIRMA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5750732421875	3	405.574955	1213.70304	-0.15166	-6.1509E-05	0.38756	0.00015718	0.2359	9.5675E-05	405.5751294447825	28.784	0.90518	28.78	28.467	29.372	-0.0042572					91	31	4	0	0	0	0.35571	1	5077	5077		17.049	0	1	1711300	+		2998	17193;23069	1554	1554	3797	3797					0.10473330631680255
ATWCVPILVLI	11	Unmodified	_ATWCVPILVLI_					0	0	0			REV__ENSG00000213937|ENST00000445369|CLDN9	REV__ENSG00000213937|ENST00000445369|CLDN9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.91046142578125	3	409.91051	1226.7097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.735	1	21.735	21.235	22.235	0								0	0	0	0.366	1	2931	2931		4.7159	0.59929	1		+		2999	19049	1555	1555	3798	3798					0.10541552258678166
ATWCVPILVLI	11	Unmodified	_ATWCVPILVLI_					0	0	0			REV__ENSG00000213937|ENST00000445369|CLDN9	REV__ENSG00000213937|ENST00000445369|CLDN9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.184814453125	3	409.91051	1226.7097	0.050262	2.0603E-05	-1.3129	-0.00053817	-1.2626	-0.00051757	409.9101845467787	21.727	0.65631	21.678	21.316	21.972	-0.049377					45	23	3	0	0	0	0.3322	1	2958	2958		4.7159	1.6437	1	183830	+		3000	19049	1555	1555	3799	3799					0.10541552258678166
ATWSRLGK	8	Unmodified	_ATWSRLGK_					0	0	0			REV__ENST00000274498.8_1_5:142393672-142416790:+|nuORF	REV__ENST00000274498.8_1_5:142393672-142416790:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.60882568359375	2	459.761426	917.5083	0.086702	3.9862E-05	0.70791	0.00032547	0.79462	0.00036533	459.76136546513584	24.253	0.56464	24.18	23.879	24.443	-0.072559					25	18	2	0	0	0	0.34218	1	3758	3758		9.3474	0	1	27791	+		3001	19687	1556	1556	3800	3800					0.04624624337191108
ATWSRLGK	8	Unmodified	_ATWSRLGK_					0	0	0			REV__ENST00000274498.8_1_5:142393672-142416790:+|nuORF	REV__ENST00000274498.8_1_5:142393672-142416790:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	459.761426	917.5083	-0.055515	-2.5523E-05	0.63436	0.00029165	0.57884	0.00026613	459.76114645240443	24.015	0.30654	24.015	23.887	24.194	0	-0.082841	-4.1786E-05	NaN	9.3474	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37899	+		3002	19687	1556	1556							0.04624624337191108
ATYAGVGANK	10	Unmodified	_ATYAGVGANK_					0	0	0		nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000486301.5_1_3:46717393-46718248:-|nuORF;ENST00000434140.5_2_3:46717393-46723043:-|nuORF	nc|ENSG00000178038|Q60I27-6|ALS2CL	nc|ENSG00000178038|Q60I27-6|ALS2CL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.2480773925781	2	476.248349	950.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.464	1	19.464	18.964	19.964	0								0	0	0	0.35421	1	2242	2242		13.042	5.1323	1				3003	7034	1557	1557	3801	3801					0.004923103750343216
ATYAGVGANK	10	Unmodified	_ATYAGVGANK_					0	0	0		nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000486301.5_1_3:46717393-46718248:-|nuORF;ENST00000434140.5_2_3:46717393-46723043:-|nuORF	nc|ENSG00000178038|Q60I27-6|ALS2CL	nc|ENSG00000178038|Q60I27-6|ALS2CL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.2484436035156	2	476.248349	950.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.545	1	19.49	18.99	19.99	-0.055693								0	0	0	0.3367	1	2265	2265		20.415	11.031	1				3004	7034	1557	1557	3802	3802					0.004923103750343216
ATYEAGALSLK	11	Unmodified	_ATYEAGALSLK_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ALS2|p.T978Ifs*30|1|0.04|ENSG00000003393|chr2:201727260-201727261|-/ATAAAGAAGAAATATAAATT|frameshift_variant;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF	ENSG00000003393|ENST00000264276|ALS2;nc|ENSG00000003393|Q96Q42-3|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.7826538085938	2	562.303321	1122.59209	0.25261	0.00014204	-0.18169	-0.00010217	0.070915	3.9875E-05	562.3034748515788	42.782	0.37836	42.867	42.704	43.083	0.085197					21	13	2	0	0	0	0.31673	1	9319	9319		22.775	3.413	1	176970			3005	302;11050	1558	1558	3803	3803					0.035696909235639396
ATYEAGALSLK	11	Unmodified	_ATYEAGALSLK_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ALS2|p.T978Ifs*30|1|0.04|ENSG00000003393|chr2:201727260-201727261|-/ATAAAGAAGAAATATAAATT|frameshift_variant;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF	ENSG00000003393|ENST00000264276|ALS2;nc|ENSG00000003393|Q96Q42-3|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.7827758789062	2	562.303321	1122.59209	0.064408	3.6217E-05	-0.5254	-0.00029544	-0.46099	-0.00025922	562.3033716089262	42.693	0.40436	42.784	42.581	42.985	0.091362					26	14	2	0	0	0	0.30782	1	9300	9300		20.871	6.4658	1	175840			3006	302;11050	1558	1558	3804	3804					0.035696909235639396
ATYGDTINR	9	Unmodified	_ATYGDTINR_					0	0	0		ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13	ENSG00000071189|ENST00000428135|SNX13	ENSG00000071189|ENST00000428135|SNX13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3186340332031	2	505.748713	1009.48287	0.24861	0.00012574	0.23234	0.00011751	0.48095	0.00024324	505.74870326266387	24.356	0.65091	24.356	24.085	24.736	0					44	21	3	0	0	0	0.16853	1	3712	3712		24.991	15.608	1	142970			3007	953	1559	1559	3805	3805					-0.021488949758918352
ATYGDTINR	9	Unmodified	_ATYGDTINR_					0	0	0		ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13	ENSG00000071189|ENST00000428135|SNX13	ENSG00000071189|ENST00000428135|SNX13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7872009277344	2	505.748713	1009.48287	0.30164	0.00015255	0.14959	7.5657E-05	0.45123	0.00022821	505.7487415305008	24.532	0.61359	24.46	24.207	24.821	-0.072559					41	20	3	0	0	0	0.21538	1	3765	3765		26.268	16.085	1	178210			3008	953	1559	1559	3806	3806					-0.021488949758918352
ATYGDTINR	9	Unmodified	_ATYGDTINR_					0	0	0		ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13	ENSG00000071189|ENST00000428135|SNX13	ENSG00000071189|ENST00000428135|SNX13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.7872009277344	2	505.748713	1009.48287	0.1515	7.6623E-05	0.28411	0.00014369	0.43561	0.00022031	505.7488218945094	24.465	0.50724	24.426	24.222	24.73	-0.038927					36	17	3	0	0	0	0.22143	1	3761	3761		24.991	9.2227	1	165070			3009	953	1559	1559	3807	3807					-0.021488949758918352
ATYGKFKVTTK	11	Unmodified	_ATYGKFKVTTK_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.5820007324219	3	415.239684	1242.69722	-0.26084	-0.00010831	0.51862	0.00021535	0.25778	0.00010704	415.2396974154397	23.116	0.5717	23.116	22.791	23.362	0					40	19	3	0	0	0	0.38248	1	3346	3346		13.535	2.0171	1	147530			3010	5000	1560	1560	3808	3808					0.0855823211995812
ATYGKFKVTTK	11	Unmodified	_ATYGKFKVTTK_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5819396972656	3	415.239684	1242.69722	0.079858	3.316E-05	-0.18507	-7.6847E-05	-0.10521	-4.3687E-05	415.2395007480971	23.235	0.5278	23.147	22.853	23.381	-0.087608					41	18	4	0	0	0	0.38248	1	3378	3378		13.535	6.0579	1	124070			3011	5000	1560	1560	3809	3809					0.0855823211995812
ATYGKFKVTTK	11	Unmodified	_ATYGKFKVTTK_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.58197021484375	3	415.239684	1242.69722	0.17016	7.0659E-05	0.15365	6.3803E-05	0.32382	0.00013446	415.2393696596689	23.205	0.48646	23.16	22.898	23.385	-0.044867					40	17	3	0	0	0	0.40129	1	3371	3371		11.065	0.16632	1	135940			3012	5000	1560	1560	3810	3810					0.0855823211995812
ATYGKFKVTTK	11	Unmodified	_ATYGKFKVTTK_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	415.239684	1242.69722	0.17016	7.0659E-05	0.15365	6.3803E-05	0.32382	0.00013446	415.2393696596689	23.205	0.48646	23.16	22.898	23.385	-0.044867	0.01906	4.8479E-05	NaN	13.535	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135940			3013	5000	1560	1560							0.0855823211995812
ATYGKPVHH	9	Unmodified	_ATYGKPVHH_					0	0	0		nc|ENSG00000174748|P61313-2|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15	nc|ENSG00000174748|P61313-2|RPL15	nc|ENSG00000174748|P61313-2|RPL15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2640686035156	2	505.264333	1008.51411	-0.030479	-1.54E-05	0.39749	0.00020084	0.36701	0.00018544	505.2645973069985	12.713	0.47629	12.713	12.582	13.058	0					38	16	4	0	0	0	0.0083926	1	204	204		81.89	33.544	1	865250			3014	6813	1561	1561	3811	3811					0.01019722848843685
ATYGKPVHH	9	Unmodified	_ATYGKPVHH_					0	0	0		nc|ENSG00000174748|P61313-2|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15	nc|ENSG00000174748|P61313-2|RPL15	nc|ENSG00000174748|P61313-2|RPL15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.26416015625	2	505.264333	1008.51411	-0.0033297	-1.6824E-06	0.18779	9.4884E-05	0.18446	9.3201E-05	505.2644667635619	12.729	0.66577	12.63	12.12	12.785	-0.09929					40	22	4	0	0	0	0.03069	1	210	210		60.074	29.849	1	789910			3015	6813	1561	1561	3812	3812					0.01019722848843685
ATYGKPVHH	9	Unmodified	_ATYGKPVHH_					0	0	0		nc|ENSG00000174748|P61313-2|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENSG00000174748|ENST00000307839|RPL15	nc|ENSG00000174748|P61313-2|RPL15	nc|ENSG00000174748|P61313-2|RPL15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2639465332031	2	505.264333	1008.51411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.733	1	12.665	12.165	13.165	-0.067496								0	0	0	0.013058	1	214	214		75.761	35.804	1				3016	6813	1561	1561	3813	3813					0.01019722848843685
ATYGLFCAIK	10	Unmodified	_ATYGLFCAIK_					0	0	0			REV__ENSG00000215045|ENST00000457091|GRID2IP	REV__ENSG00000215045|ENST00000457091|GRID2IP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.79541015625	2	543.786253	1085.55795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.706	1	61.706	61.206	62.206	0								0	0	0	0.33945	1	15179	15179		19.257	0	1		+		3017	19073	1562	1562	3814	3814					0.01859571230943402
ATYGLFCAIK	10	Unmodified	_ATYGLFCAIK_					0	0	0			REV__ENSG00000215045|ENST00000457091|GRID2IP	REV__ENSG00000215045|ENST00000457091|GRID2IP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.7957153320312	2	543.786253	1085.55795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.748	1	61.739	61.239	62.239	-0.0085526								0	0	0	0.32814	1	15182	15182		24.021	9.1823	1		+		3018	19073	1562	1562	3815	3815					0.01859571230943402
ATYHGSFSTK	10	Unmodified	_ATYHGSFSTK_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7644653320312	2	549.764363	1097.51417	0.2654	0.00014591	0.054184	2.9788E-05	0.31958	0.0001757	549.7643325387194	18.253	0.62132	18.253	18.024	18.646	0					49	21	3	0	0	0	0.16374	1	1886	1886		37.075	10.191	1	284160			3019	5669	1563	1563	3816	3816					-0.030683219418278895
ATYHGSFSTK	10	Unmodified	_ATYHGSFSTK_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7643432617188	2	549.764363	1097.51417	0.27968	0.00015376	-0.081268	-4.4678E-05	0.19841	0.00010908	549.7642512537132	18.423	0.61339	18.306	18.065	18.678	-0.11739					51	20	4	0	0	0	0.12628	1	1944	1944		42.312	15.429	1	303840			3020	5669	1563	1563	3817	3817					-0.030683219418278895
ATYHGSFSTK	10	Unmodified	_ATYHGSFSTK_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7645263671875	2	549.764363	1097.51417	0.102	5.6078E-05	0.14274	7.8473E-05	0.24474	0.00013455	549.7643787141158	18.449	0.48179	18.391	18.199	18.681	-0.058174					44	16	4	0	0	0	0.18709	1	1946	1946		34.222	7.3381	1	321490			3021	5669	1563	1563	3818	3818					-0.030683219418278895
ATYHHLLED	9	Unmodified	_ATYHHLLED_					0	0	0		ENST00000604826.1_1_6:34158651-34158831:+|nuORF	ENST00000604826.1_1_6:34158651-34158831:+|nuORF	ENST00000604826.1_1_6:34158651-34158831:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7645874023438	2	549.764363	1097.51417	0.2654	0.00014591	0.054184	2.9788E-05	0.31958	0.0001757	549.7643325387194	18.253	0.62132	18.253	18.024	18.646	0					49	21	3	0	0	0	0.31417	1	1933	1933		6.7232	2.1943	1	284160			3022	12283	1564	1564	3819	3819					-0.03068321941805152
ATYHHLLED	9	Unmodified	_ATYHHLLED_					0	0	0		ENST00000604826.1_1_6:34158651-34158831:+|nuORF	ENST00000604826.1_1_6:34158651-34158831:+|nuORF	ENST00000604826.1_1_6:34158651-34158831:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.764404296875	2	549.764363	1097.51417	0.102	5.6078E-05	0.14274	7.8473E-05	0.24474	0.00013455	549.7643787141158	18.449	0.48179	18.391	18.199	18.681	-0.058174					44	16	4	0	0	0	0.31417	1	2001	2001		6.7232	0.51738	1	321490			3023	12283	1564	1564	3820	3820					-0.03068321941805152
ATYLLEENKIK	11	Unmodified	_ATYLLEENKIK_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.8862609863281	3	441.250249	1320.72892	-0.17705	-7.8123E-05	-1.7352	-0.00076567	-1.9123	-0.00084379	441.24961874120237	13.693	0.22525	13.693	13.597	13.822	0					10	7	2	0	0	0	0.3322	1	499	499		2.6312	0.72486	1	31756			3024	4756	1565	1565	3821	3821					0.08138180083255975
ATYPDVNNSIK	11	Unmodified	_ATYPDVNNSIK_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.3092651367188	2	611.309135	1220.60372	0.40975	0.00025048	0.27778	0.00016981	0.68753	0.00042029	611.30922565718	35.778	0.46427	35.861	35.598	36.062	0.082355					28	16	2	0	0	0	0.37165	1	7215	7215		14.957	7.3482	1	339260			3025	3079	1566	1566	3822	3822					0.0022388794689049973
ATYPDVNNSIK	11	Unmodified	_ATYPDVNNSIK_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.3095092773438	2	611.309135	1220.60372	0.28248	0.00017268	0.33611	0.00020547	0.61859	0.00037815	611.30912716174	35.765	0.49215	35.851	35.62	36.112	0.086246					35	17	3	0	0	0	0.37728	1	7203	7203		14.218	6.6092	1	283590			3026	3079	1566	1566	3823	3823					0.0022388794689049973
ATYPYIVTYK	10	Unmodified	_ATYPYIVTYK_					0	0	0			REV__ENSG00000174705|ENST00000311601|SH3PXD2B	REV__ENSG00000174705|ENST00000311601|SH3PXD2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2362976074219	3	406.885018	1217.63323	-0.14393	-5.8562E-05	-3.2313	-0.0013148	-3.3752	-0.0013733	406.8835590697365	22.37	0.48214	22.27	22.017	22.499	-0.10034					22	17	2	0	0	0	0.31969	1	3059	3059		3.3196	0	1	18796	+		3027	17849	1567	1567	3824	3824					0.03311451963031686
ATYPYQVVR	9	Unmodified	_ATYPYQVVR_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32;ENST00000523701.1_1_8:104413742-104414267:-|nuORF	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7933349609375	2	548.792924	1095.57129	0.20709	0.00011365	0.74451	0.00040858	0.9516	0.00052223	548.7932438368267	39.85	1.2311	39.85	39.373	40.604	0					111	44	4	0	0	0	0.0076724	1	8429	8429		87.258	64.522	1	1855000			3028	5902	1568	1568	3825	3825					0.027331453345595946
ATYPYQVVR	9	Unmodified	_ATYPYQVVR_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32;ENST00000523701.1_1_8:104413742-104414267:-|nuORF	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7933959960938	2	548.792924	1095.57129	0.53342	0.00029274	0.21962	0.00012053	0.75304	0.00041326	548.7929805831922	39.682	1.0318	39.775	39.416	40.448	0.09267					82	36	3	0	0	0	0.011436	1	8368	8368		90.135	90.135	1	2237400			3029	5902	1568	1568	3826	3826					0.027331453345595946
ATYPYQVVR	9	Unmodified	_ATYPYQVVR_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32;ENST00000523701.1_1_8:104413742-104414267:-|nuORF	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7933349609375	2	548.792924	1095.57129	0.47118	0.00025858	0.36579	0.00020074	0.83697	0.00045932	548.7930014623123	39.612	1.1908	39.711	39.236	40.427	0.099403					100	42	3	0	0	0	0.0045319	1	8321	8321		90.135	56.033	1	2564200			3030	5902	1568	1568	3827	3827					0.027331453345595946
ATYPYQVVRAR	11	Unmodified	_ATYPYQVVRAR_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32;ENST00000523701.1_1_8:104413742-104414267:-|nuORF	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.91009521484375	3	441.910449	1322.70952	-1.0981	-0.00048527	0.49224	0.00021753	-0.60587	-0.00026774	441.9106587513113	34.964	1.0216	34.964	34.418	35.439	0					96	36	4	0	0	0	0.41892	1	6975	6975		8.7518	6.317	1	713520			3031	5902	1569	1569	3828	3828					0.061072685830367845
ATYPYQVVRAR	11	Unmodified	_ATYPYQVVRAR_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32;ENST00000523701.1_1_8:104413742-104414267:-|nuORF	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.244384765625	3	441.910449	1322.70952	-1.26	-0.00055683	0.66298	0.00029298	-0.59706	-0.00026385	441.91068153327774	34.956	0.98542	35.031	34.444	35.429	0.075306					94	35	4	0	0	0	0.42246	1	6930	6930		8.2864	5.6552	1	564950			3032	5902	1569	1569	3829	3829					0.061072685830367845
ATYPYQVVRAR	11	Unmodified	_ATYPYQVVRAR_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32;ENST00000523701.1_1_8:104413742-104414267:-|nuORF	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2444763183594	3	441.910449	1322.70952	-0.71949	-0.00031795	0.142	6.2753E-05	-0.57749	-0.0002552	441.91043778316	34.861	1.0505	34.939	34.417	35.467	0.077377					87	37	3	0	0	0	0.41892	2	6934	6934;6986		8.7518	5.6795	1	644640			3033	5902	1569	1569	3830;3831	3830					0.061072685830367845
ATYRDYDLMK	10	Unmodified	_ATYRDYDLMK_					0	0	0		ENSG00000102055|ENST00000378131|PPP1R2C	ENSG00000102055|ENST00000378131|PPP1R2C	ENSG00000102055|ENST00000378131|PPP1R2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3056030273438	2	638.305538	1274.59652	0.68252	0.00043566	-0.36056	-0.00023015	0.32197	0.00020551	638.3052465935663	40.138	0.8298	40.237	39.894	40.724	0.099407					77	29	4	0	0	0	0.24105	1	8549	8549		27.629	1.3607	1	1075400			3034	1743	1570	1570	3832	3832					-0.029791679251957248
ATYSVGMQK	9	Oxidation (M)	_ATYSVGM(Oxidation (M))QK_		ATYSVGM(1)QK		ATYSVGM(89)QK	0	0	1		nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;ENST00000592247.1_1_19:33470904-33481620:-|nuORF;nc|ENSG00000258628|A8MT19|RHPN2P1	nc|ENSG00000131941|Q8IUC4-2|RHPN2	nc|ENSG00000131941|Q8IUC4-2|RHPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.74212646484375	2	500.742042	999.469531	0.19369	9.6989E-05	0.13329	6.6746E-05	0.32698	0.00016373	500.7420168048977	19.162	0.83465	19.046	18.68	19.514	-0.11592					76	29	3	0	0	0	0.0046246	1	2173	2173		89.401	47.445	1	297290			3035	3598	1571	1571	3833	3833		457			-0.030224690794852904
ATYSVGMQK	9	Oxidation (M)	_ATYSVGM(Oxidation (M))QK_		ATYSVGM(1)QK		ATYSVGM(63)QK	0	0	1		nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;ENST00000592247.1_1_19:33470904-33481620:-|nuORF;nc|ENSG00000258628|A8MT19|RHPN2P1	nc|ENSG00000131941|Q8IUC4-2|RHPN2	nc|ENSG00000131941|Q8IUC4-2|RHPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7420654296875	2	500.742042	999.469531	0.14111	7.066E-05	0.039659	1.9859E-05	0.18077	9.0519E-05	500.7419548678065	19.114	0.85924	19.058	18.656	19.516	-0.056084					72	29	3	0	0	0	0.023967	1	2150	2150		62.573	26.066	1	275940			3036	3598	1571	1571	3834	3834		457			-0.030224690794852904
ATYTDKLFK	9	Unmodified	_ATYTDKLFK_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2947387695312	2	543.795132	1085.57571	-0.57828	-0.00031447	-1.4231	-0.00077388	-2.0014	-0.0010883	544.2954022670939	35.034	1.046	35.034	34.446	35.492	0					100	37	4	0	0	0	0.069258	1	7000	7000		45.74	9.2337	1	1046100			3037	1455	1572	1572	3835	3835					0.03634609757477847
ATYTDKLFK	9	Unmodified	_ATYTDKLFK_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7952880859375	2	543.795132	1085.57571	-0.51514	-0.00028013	-1.6427	-0.0008933	-2.1579	-0.0011734	544.2952526862618	35.017	1.0672	35.092	34.414	35.481	0.075306					103	38	4	0	0	0	0.069258	1	7030	7030		45.74	9.2337	1	504950			3038	1455	1572	1572	3836	3836					0.03634609757477847
ATYTDKLFK	9	Unmodified	_ATYTDKLFK_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7828979492188	2	543.795132	1085.57571	0.68936	0.00037487	-0.1373	-7.4663E-05	0.55206	0.00030021	543.7951200371698	44.732	0.5208	44.801	44.513	45.034	0.068569					26	18	2	0	0	0	0.086462	1	9894	9894		40.239	8.9709	1	432430			3039	1455	1572	1572	3837	3837					0.03634609757477847
ATYTDKLFK	9	Unmodified	_ATYTDKLFK_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2954711914062	2	543.795132	1085.57571	-0.32978	-0.00017933	-1.7127	-0.00093136	-2.0425	-0.0011107	544.2951935296284	34.999	1.0226	35.077	34.444	35.467	0.077377					96	36	4	0	0	0	0.013404	2	6992	6992;7010		74.2	30.427	1	842800			3040	1455	1572	1572	3838;3839	3838					0.03634609757477847
ATYTDKLFK	9	Unmodified	_ATYTDKLFK_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3058471679688	2	543.795132	1085.57571	0.7655	0.00041627	-0.19639	-0.0001068	0.5691	0.00030948	543.7950979694737	44.721	0.65206	44.796	44.449	45.101	0.075047					35	23	2	0	0	0	0.19208	1	9889	9889		33.445	11.855	1	411950			3041	1455	1572	1572	3840	3840					0.03634609757477847
ATYYGAFIKK	10	Unmodified	_ATYYGAFIKK_					0	0	0		nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;TNIK|p.S574Mfs*23|1|0.18|ENSG00000154310|chr3:171128766-171128766|C/-|frameshift_variant;TNIK|p.E281Nfs*3|1|0.09|ENSG00000154310|chr3:171167203-171167203|C/-|frameshift_variant;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000572330.5_1_17:4736842-4793277:+|nuORF;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000141503|Q8N4C8-5|MINK1	nc|ENSG00000154310|Q9UKE5-8|TNIK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.7855834960938	2	581.318774	1160.623	0.38153	0.00022179	0.64826	0.00037684	1.0298	0.00059864	581.3193197434894	37.958	0.50465	37.958	37.735	38.239	0					46	17	3	0	0	0	0.25821	1	7825	7825		34.932	19.085	1	1012400			3042	5122;949;4386	1573	1573	3841	3841					0.04910889028451493
ATYYGAFIKK	10	Unmodified	_ATYYGAFIKK_					0	0	0		nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;TNIK|p.S574Mfs*23|1|0.18|ENSG00000154310|chr3:171128766-171128766|C/-|frameshift_variant;TNIK|p.E281Nfs*3|1|0.09|ENSG00000154310|chr3:171167203-171167203|C/-|frameshift_variant;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000572330.5_1_17:4736842-4793277:+|nuORF;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000141503|Q8N4C8-5|MINK1	nc|ENSG00000154310|Q9UKE5-8|TNIK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7857666015625	2	581.318774	1160.623	0.3553	0.00020654	0.6167	0.0003585	0.97201	0.00056504	581.3193899778156	37.866	0.57099	37.957	37.693	38.264	0.090881					60	20	4	0	0	0	0.19117	1	7837	7837		38.615	13.215	1	749270			3043	5122;949;4386	1573	1573	3842	3842					0.04910889028451493
ATYYGAFIKK	10	Unmodified	_ATYYGAFIKK_					0	0	0		nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;TNIK|p.S574Mfs*23|1|0.18|ENSG00000154310|chr3:171128766-171128766|C/-|frameshift_variant;TNIK|p.E281Nfs*3|1|0.09|ENSG00000154310|chr3:171167203-171167203|C/-|frameshift_variant;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000572330.5_1_17:4736842-4793277:+|nuORF;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000141503|Q8N4C8-5|MINK1	nc|ENSG00000154310|Q9UKE5-8|TNIK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.7859497070312	2	581.318774	1160.623	0.27209	0.00015817	0.80536	0.00046817	1.0774	0.00062634	581.3193442439662	37.774	0.61176	37.872	37.654	38.266	0.097527					58	21	4	0	0	0	0.15532	1	7819	7819		53.404	32.95	1	897020			3044	5122;949;4386	1573	1573	3843	3843					0.04910889028451493
ATYYGSLFK	9	Unmodified	_ATYYGSLFK_					0	0	0		nc|ENSG00000170854|Q8IUF8-2|RIOX2;nc|ENSG00000170854|Q8IUF8-4|RIOX2;ENSG00000170854|ENST00000394198|RIOX2	nc|ENSG00000170854|Q8IUF8-2|RIOX2	nc|ENSG00000170854|Q8IUF8-2|RIOX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8007202148438	2	525.26875	1048.52295	0.49474	0.00025987	-0.36557	-0.00019202	0.12917	6.7849E-05	525.2684182668976	49.964	0.51604	49.964	49.701	50.217	0					29	18	2	0	0	0	0.21623	1	11536	11536		27.223	10.281	1	619800			3045	6486	1574	1574	3844	3844					0.0006265169467951637
ATYYGSLFK	9	Unmodified	_ATYYGSLFK_					0	0	0		nc|ENSG00000170854|Q8IUF8-2|RIOX2;nc|ENSG00000170854|Q8IUF8-4|RIOX2;ENSG00000170854|ENST00000394198|RIOX2	nc|ENSG00000170854|Q8IUF8-2|RIOX2	nc|ENSG00000170854|Q8IUF8-2|RIOX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8009033203125	2	525.26875	1048.52295	0.63998	0.00033616	-0.15381	-8.0792E-05	0.48617	0.00025537	525.2685423306892	49.928	0.51546	49.973	49.669	50.185	0.044891					39	19	3	0	0	0	0.22143	1	11526	11526		24.991	14.167	1	661610			3046	6486	1574	1574	3845	3845					0.0006265169467951637
AVAAAAYYR	9	Unmodified	_AVAAAAYYR_					0	0	0		ENSG00000152518|ENST00000282388|ZFP36L2	ENSG00000152518|ENST00000282388|ZFP36L2	ENSG00000152518|ENST00000282388|ZFP36L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.28155517578125	2	478.253434	954.492316	-0.048553	-2.322E-05	-2.515	-0.0012028	-2.5636	-0.001226	478.25335579277794	30.146	0.32121	30.173	29.987	30.309	0.027157					13	10	2	0	0	0	0.10111	1	5492	5492		42.095	20.348	1	75763			3047	5023	1575	1575	3846	3846					0.013249181002720434
AVAAFVLYK	9	Unmodified	_AVAAFVLYK_					0	0	0		nc|ENSG00000159884|Q8WV48-4|CCDC107;nc|ENSG00000159884|Q8WV48-3|CCDC107;nc|ENSG00000159884|Q8WV48-2|CCDC107;nc|ENSG00000159884|Q8WV48-5|CCDC107;ENSG00000159884|ENST00000426546|CCDC107	nc|ENSG00000159884|Q8WV48-4|CCDC107	nc|ENSG00000159884|Q8WV48-4|CCDC107	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.8059997558594	2	491.292028	980.569503	0.45139	0.00022177	0.86228	0.00042363	1.3137	0.0006454	491.29120067911305	53.18	1.1245	53.18	52.875	53.999	0					90	41	4	0	0	0	0.017871	1	12535	12535		67.344	26.895	1	1569100			3048	5427	1576	1576	3847	3847					0.07844136316623462
AVAAFVLYK	9	Unmodified	_AVAAFVLYK_					0	0	0		nc|ENSG00000159884|Q8WV48-4|CCDC107;nc|ENSG00000159884|Q8WV48-3|CCDC107;nc|ENSG00000159884|Q8WV48-2|CCDC107;nc|ENSG00000159884|Q8WV48-5|CCDC107;ENSG00000159884|ENST00000426546|CCDC107	nc|ENSG00000159884|Q8WV48-4|CCDC107	nc|ENSG00000159884|Q8WV48-4|CCDC107	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.8056945800781	2	491.292028	980.569503	0.51772	0.00025435	1.019	0.00050064	1.5367	0.00075499	491.2910480755633	53.182	1.0106	53.239	52.913	53.923	0.056259					100	37	5	0	0	0	0.017871	1	12514	12514		67.344	35.227	1	1602200			3049	5427	1576	1576	3848	3848					0.07844136316623462
AVAAFVLYK	9	Unmodified	_AVAAFVLYK_					0	0	0		nc|ENSG00000159884|Q8WV48-4|CCDC107;nc|ENSG00000159884|Q8WV48-3|CCDC107;nc|ENSG00000159884|Q8WV48-2|CCDC107;nc|ENSG00000159884|Q8WV48-5|CCDC107;ENSG00000159884|ENST00000426546|CCDC107	nc|ENSG00000159884|Q8WV48-4|CCDC107	nc|ENSG00000159884|Q8WV48-4|CCDC107	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.80548095703125	2	491.292028	980.569503	0.41483	0.0002038	1.6567	0.00081393	2.0716	0.0010177	491.2911494695255	53.267	0.93394	53.257	52.837	53.771	-0.0096054					89	34	5	0	0	0	0.019896	1	12563	12563		64.236	23.788	1	1861500			3050	5427	1576	1576	3849	3849					0.07844136316623462
AVAAVAARR	9	Unmodified	_AVAAVAARR_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB;ENST00000534419.1_1_11:62407519-62414080:-|nuORF;nc|ENSG00000089597|Q14697-3|GANAB;ENST00000526392.1_1_11:62402291-62414071:-|nuORF	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7750549316406	2	442.774868	883.535184	-0.083402	-3.6928E-05	0.48738	0.0002158	0.40397	0.00017887	442.77517707997885	14.861	1.2692	14.861	14.623	15.892	0					83	44	4	0	0	0	2.4571E-07	1	839	839		170.55	31.007	1	2675900			3051	1361	1577	1577	3850	3850					0.08875732948365567
AVAAVAARR	9	Unmodified	_AVAAVAARR_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB;ENST00000534419.1_1_11:62407519-62414080:-|nuORF;nc|ENSG00000089597|Q14697-3|GANAB;ENST00000526392.1_1_11:62402291-62414071:-|nuORF	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.7750244140625	2	442.774868	883.535184	-0.098466	-4.3598E-05	0.42645	0.00018882	0.32798	0.00014522	442.7751274498031	14.944	0.99189	14.835	14.618	15.61	-0.10982					86	34	5	0	0	0	1.576E-05	2	907	864;907		154.46	14.919	1	2618700			3052	1361	1577	1577	3851;3852	3852					0.08875732948365567
AVAAVAARR	9	Unmodified	_AVAAVAARR_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB;ENST00000534419.1_1_11:62407519-62414080:-|nuORF;nc|ENSG00000089597|Q14697-3|GANAB;ENST00000526392.1_1_11:62402291-62414071:-|nuORF	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7750244140625	2	442.774868	883.535184	-0.073612	-3.2593E-05	0.47643	0.00021095	0.40281	0.00017836	442.77516355447193	14.979	0.96771	14.914	14.7	15.668	-0.064413					73	32	4	0	0	0	0.00010798	2	865	865;913		139.54	26.951	1	2581800			3053	1361	1577	1577	3853;3854	3853					0.08875732948365567
AVADSVLTK	9	Unmodified	_AVADSVLTK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.260986328125	2	452.260925	902.507297	0.34815	0.00015745	-0.57595	-0.00026048	-0.2278	-0.00010302	452.260531690595	29.603	0.67862	29.603	29.355	30.034	0					42	23	3	0	0	0	0.13296	1	5313	5313		33.445	8.0456	1	289230			3054	6752	1578	1578	3855	3855					0.05214365177619129
AVADSVLTK	9	Unmodified	_AVADSVLTK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2609558105469	2	452.260925	902.507297	-0.025785	-1.1661E-05	-0.17049	-7.7105E-05	-0.19627	-8.8766E-05	452.2607398964344	29.574	0.64477	29.587	29.329	29.974	0.013475					39	21	3	0	0	0	0.13748	1	5306	5306		32.786	8.7651	1	288420			3055	6752	1578	1578	3856	3856					0.05214365177619129
AVADSVLTK	9	Unmodified	_AVADSVLTK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	452.260925	902.507297	0.21226	9.5997E-05	-0.59018	-0.00026692	-0.37792	-0.00017092	452.2606226107112	29.563	0.52793	29.575	29.302	29.83	0.012266	-0.013444	-0.00013449	NaN	33.445	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294780			3056	6752	1578	1578							0.05214365177619129
AVAEEHTVEEL	11	Unmodified	_AVAEEHTVEEL_					0	0	0			REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF	REV__ENST00000529111.5_1_11:83344252-84634162:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5699768066406	3	409.534825	1225.58265	-0.14575	-5.9689E-05	0.71101	0.00029119	0.56527	0.0002315	409.86846385323435	25.779	0.69899	25.757	25.246	25.945	-0.022238					49	24	4	0	0	0	0.33085	1	4118	4118		1.3296	0	1	139290	+		3057	16506	1579	1579	3857	3857					-0.021121221526072986
AVAEEVNAILK	11	Unmodified	_AVAEEVNAILK_					0	0	0		nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000054356|Q16849-2|PTPRN;ENSG00000054356|ENST00000295718|PTPRN;ENST00000462351.5_1_2:220154950-220159983:-|nuORF;nc|ENSG00000155093|Q92932-3|PTPRN2;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2	nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000155093|Q92932-2|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.8324584960938	2	578.832246	1155.64994	0.27387	0.00015852	0.046681	2.702E-05	0.32055	0.00018554	578.8322203180787	52.367	1.0411	52.367	51.997	53.038	0					109	37	4	0	0	0	2.2265E-34	2	12290	12243;12290		238.63	156.71	1	10909000			3058	5157;687	1580	1580	3858;3859	3859					0.07833952848977788
AVAEEVNAILK	11	Unmodified	_AVAEEVNAILK_					0	0	0		nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000054356|Q16849-2|PTPRN;ENSG00000054356|ENST00000295718|PTPRN;ENST00000462351.5_1_2:220154950-220159983:-|nuORF;nc|ENSG00000155093|Q92932-3|PTPRN2;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2	nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000155093|Q92932-2|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.8323364257812	2	578.832246	1155.64994	0.34992	0.00020254	-0.0093543	-5.4146E-06	0.34056	0.00019713	578.8321941919661	52.271	0.95139	52.321	51.985	52.936	0.050575					114	34	5	0	0	0	2.3316E-25	4	12251	12211;12251;12300;12345		210.93	129.02	1	9519800			3059	5157;687	1580	1580	3860;3861;3862;3863	3861					0.07833952848977788
AVAEEVNAILK	11	Unmodified	_AVAEEVNAILK_					0	0	0		nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000054356|Q16849-2|PTPRN;ENSG00000054356|ENST00000295718|PTPRN;ENST00000462351.5_1_2:220154950-220159983:-|nuORF;nc|ENSG00000155093|Q92932-3|PTPRN2;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2	nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000155093|Q92932-2|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.83251953125	2	578.832246	1155.64994	0.14236	8.2404E-05	0.22713	0.00013147	0.3695	0.00021388	578.8323383514056	52.454	1.0851	52.453	52.09	53.175	-0.00080872					110	39	4	0	0	0	1.4478E-18	3	12308	12260;12308;12363		197.86	121.04	1	10616000			3060	5157;687	1580	1580	3864;3865;3866	3865					0.07833952848977788
AVAEGAKNVMK	11	Oxidation (M)	_AVAEGAKNVM(Oxidation (M))K_		AVAEGAKNVM(1)K		AVAEGAKNVM(48)K	0	0	1		nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.302978515625	2	567.302798	1132.59104	-0.10407	-5.9039E-05	0.12563	7.1269E-05	0.021557	1.2229E-05	567.3029254618884	13.837	0.34531	13.771	13.632	13.977	-0.066067					32	11	4	0	0	0	0.067879	1	545	545		48.073	36.578	1	242520			3061	809;12580	1581	1581	3867	3867		103			0.030051532830157157
AVAEPANAVK	10	Unmodified	_AVAEPANAVK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.27203369140625	2	485.271824	968.529095	0.3176	0.00015412	0.049982	2.4255E-05	0.36758	0.00017838	485.27189425509323	21.735	0.63536	21.635	21.308	21.943	-0.10034					38	22	3	0	0	0	0.22295	1	2936	2936		29.841	11.694	1	184060			3062	6752	1582	1582	3868	3868					0.043571699261860886
AVAEPANAVK	10	Unmodified	_AVAEPANAVK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2720947265625	2	485.271824	968.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.681	1	21.632	21.132	22.132	-0.049377								0	0	0	0.29474	1	2913	2913		28.495	5.3461	1				3063	6752	1582	1582	3869	3869					0.043571699261860886
AVAFGSFFQGY	11	Unmodified	_AVAFGSFFQGY_					0	0	0		ENSG00000182158|ENST00000330387|CREB3L2;CREB3L2|p.Y401Lfs*22|1|0.16|ENSG00000182158|chr7:137885057-137885063|GAAGGAT/-|frameshift_variant;nc|ENSG00000182158|Q70SY1-2|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.856689453125	2	597.284931	1192.55531	0.73799	0.00044079	2.4367	0.0014554	3.1747	0.0018962	597.2857036511681	83.814	0.3856	83.814	83.588	83.973	0					18	14	2	0	0	0	0.32863	1	21915	21915		5.0475	0	1	170340			3064	7273	1583	1583	3870	3870					-0.033265609023374054
AVAFGSFFQGY	11	Unmodified	_AVAFGSFFQGY_					0	0	0		ENSG00000182158|ENST00000330387|CREB3L2;CREB3L2|p.Y401Lfs*22|1|0.16|ENSG00000182158|chr7:137885057-137885063|GAAGGAT/-|frameshift_variant;nc|ENSG00000182158|Q70SY1-2|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8568115234375	2	597.284931	1192.55531	0.60506	0.0003614	1.9388	0.001158	2.5438	0.0015194	597.285568962576	83.754	0.4059	83.737	83.509	83.915	-0.016823					25	18	2	0	0	0	0.32855	1	21918	21918		7.1017	5.2575	1	266650			3065	7273	1583	1583	3871	3871					-0.033265609023374054
AVAGDFALINK	11	Unmodified	_AVAGDFALINK_					0	0	0		ENSG00000107669|ENST00000224652|ATE1;nc|ENSG00000107669|O95260-2|ATE1	ENSG00000107669|ENST00000224652|ATE1;nc|ENSG00000107669|O95260-2|ATE1	ENSG00000107669|ENST00000224652|ATE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8138427734375	2	559.813856	1117.61316	0.44785	0.00025071	-0.53095	-0.00029723	-0.083099	-4.652E-05	559.8133554139024	50.226	0.5175	50.226	50.001	50.518	0					32	18	3	0	0	0	0.069058	1	11657	11657		47.732	30.289	1	486920			3066	2139;12641	1584	1584	3872	3872					0.05905701023084475
AVAGDFALINK	11	Unmodified	_AVAGDFALINK_					0	0	0		ENSG00000107669|ENST00000224652|ATE1;nc|ENSG00000107669|O95260-2|ATE1	ENSG00000107669|ENST00000224652|ATE1;nc|ENSG00000107669|O95260-2|ATE1	ENSG00000107669|ENST00000224652|ATE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.8137817382812	2	559.813856	1117.61316	0.75823	0.00042447	-1.0144	-0.00056787	-0.25616	-0.0001434	559.8131237568821	50.203	0.39933	50.223	50.038	50.437	0.020691					32	14	3	0	0	0	0.043109	1	11626	11626		55.235	32.577	1	504910			3067	2139;12641	1584	1584	3873	3873					0.05905701023084475
AVAGDFALINK	11	Unmodified	_AVAGDFALINK_					0	0	0		ENSG00000107669|ENST00000224652|ATE1;nc|ENSG00000107669|O95260-2|ATE1	ENSG00000107669|ENST00000224652|ATE1;nc|ENSG00000107669|O95260-2|ATE1	ENSG00000107669|ENST00000224652|ATE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	559.813856	1117.61316	0.81954	0.00045879	-1.2518	-0.00070075	-0.43222	-0.00024196	559.8129641424922	50.207	0.45375	50.252	50.007	50.461	0.044891	0.018111	-0.00045077	NaN	55.235	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	477450			3068	2139;12641	1584	1584							0.05905701023084475
AVAGRSREKLQ	11	Unmodified	_AVAGRSREKLQ_					0	0	0		ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2467041015625	3	405.570316	1213.68912	-0.10594	-4.2967E-05	-0.27416	-0.00011119	-0.3801	-0.00015416	405.57027493826587	17.579	0.52498	17.519	17.241	17.766	-0.060429					23	17	2	0	0	0	0.33119	1	1686	1686		2.6312	0	1	33119			3069	4539	1585	1585	3874	3874					0.09082097923237598
AVAGVRDPSV	10	Unmodified	_AVAGVRDPSV_					0	0	0		ENST00000372068.6_1_X:109246345-109246847:+|nuORF	ENST00000372068.6_1_X:109246345-109246847:+|nuORF	ENST00000372068.6_1_X:109246345-109246847:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.29071044921875	2	485.769448	969.524344	0.52917	0.00025706	-1.2467	-0.0006056	-0.71752	-0.00034855	485.76883983082683	20.734	0.34629	20.624	20.407	20.753	-0.11003					21	11	3	0	0	0	0.29038	1	2640	2640		24.021	4.7636	1	144290			3070	9834	1586	1586	3875	3875					0.03836285783427229
AVAHALTEK	9	Unmodified	_AVAHALTEK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2653503417969	2	470.266542	938.51853	-0.20765	-9.765E-05	-0.35903	-0.00016884	-0.56668	-0.00026649	470.2662594947951	15.304	0.49667	15.304	15.127	15.624	0					29	16	2	0	0	0	0.18208	2	985	985;999		26.268	12.362	1	105050			3071	5683	1587	1587	3876;3877	3876					0.0468118727176261
AVAHALTEK	9	Unmodified	_AVAHALTEK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2660217285156	2	470.266542	938.51853	-0.077428	-3.6412E-05	0.17115	8.0485E-05	0.093719	4.4073E-05	470.2665493033252	15.463	0.48597	15.353	15.093	15.579	-0.10981					36	16	3	0	0	0	0.26612	1	1033	1033		13.906	3.0821	1	78652			3072	5683	1587	1587	3878	3878					0.0468118727176261
AVAIGMFSGG	10	Unmodified	_AVAIGMFSGG_					0	0	0		nc|ENSG00000205754|G3V0H7|SLCO1B7;nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7	nc|ENSG00000205754|G3V0H7|SLCO1B7	nc|ENSG00000205754|G3V0H7|SLCO1B7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2428894042969	2	455.228571	908.442588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.889	1	39.889	39.389	40.389	0								0	0	0	0.36787	1	8457	8457		7.2892	0.93513	1				3073	12915	1588	1588	3879	3879					-0.015295329000196034
AVAIKAMAK	9	Oxidation (M)	_AVAIKAM(Oxidation (M))AK_		AVAIKAM(1)AK		AVAIKAM(89)AK	0	0	1		ENSG00000132507|ENST00000336458|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7763977050781	2	459.775688	917.536823	-0.24371	-0.00011205	-0.23303	-0.00010714	-0.47674	-0.00021919	459.7763250542379	14.64	1.8703	14.64	14.164	16.035	0					158	65	5	0	0	0	0.004681	2	793	793;838		88.954	33.544	1	11358000			3074	3642	1589	1589	3880;3881	3880		461			0.07475605922115847
AVAIKAMAK	9	Oxidation (M)	_AVAIKAM(Oxidation (M))AK_		AVAIKAM(1)AK		AVAIKAM(89)AK	0	0	1		ENSG00000132507|ENST00000336458|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.77642822265625	2	459.775688	917.536823	-0.17473	-8.0338E-05	-0.3087	-0.00014193	-0.48343	-0.00022227	459.7762587376676	14.682	1.9623	14.578	14.238	16.201	-0.10466					148	67	5	0	0	0	0.004681	3	820	778;820;863		88.954	28.057	1	11041000			3075	3642	1589	1589	3882;3883;3884	3883		461			0.07475605922115847
AVAIKAMAK	9	Oxidation (M)	_AVAIKAM(Oxidation (M))AK_		AVAIKAM(1)AK		AVAIKAM(100)AK	0	0	1		ENSG00000132507|ENST00000336458|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.77630615234375	2	459.775688	917.536823	-0.14574	-6.7008E-05	-0.3643	-0.0001675	-0.51004	-0.0002345	459.776274328062	14.713	1.8813	14.647	14.32	16.202	-0.066068					146	65	5	0	0	0	0.0033114	3	803	803;845;888		99.799	21.071	1	11742000			3076	3642	1589	1589	3885;3886;3887	3885		461			0.07475605922115847
AVAISSTQK	9	Unmodified	_AVAISSTQK_					0	0	0			REV__nc|ENSG00000177707|Q9NQS3-3|NECTIN3	REV__nc|ENSG00000177707|Q9NQS3-3|NECTIN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.74951171875	2	452.758549	903.502546	0.042717	1.9341E-05	-0.098572	-4.4629E-05	-0.055855	-2.5289E-05	452.7584599128612	23.913	0.49132	23.913	23.643	24.134	0					29	16	2	0	0	0	0.088391	1	3650	3650		39.957	7.8404	1	454920	+		3077	23104	1590	1590	3888	3888					0.046934810348602696
AVAISSTQK	9	Unmodified	_AVAISSTQK_					0	0	0			REV__nc|ENSG00000177707|Q9NQS3-3|NECTIN3	REV__nc|ENSG00000177707|Q9NQS3-3|NECTIN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.74957275390625	2	452.758549	903.502546	0.13252	5.9998E-05	-0.16	-7.2443E-05	-0.027489	-1.2446E-05	452.7583549304464	24.028	0.64399	23.956	23.563	24.207	-0.072559					43	21	3	0	0	0	0.088391	1	3687	3687		39.957	3.9131	1	423540	+		3078	23104	1590	1590	3889	3889					0.046934810348602696
AVAISSTQK	9	Unmodified	_AVAISSTQK_					0	0	0			REV__nc|ENSG00000177707|Q9NQS3-3|NECTIN3	REV__nc|ENSG00000177707|Q9NQS3-3|NECTIN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7495422363281	2	452.758549	903.502546	0.22571	0.00010219	-0.26279	-0.00011898	-0.037081	-1.6789E-05	452.7583450813994	24.02	0.66201	23.981	23.534	24.196	-0.038927					45	22	3	0	0	0	0.062246	1	3677	3677		48.346	4.5735	1	447990	+		3079	23104	1590	1590	3890	3890					0.046934810348602696
AVAIVWFI	8	Unmodified	_AVAIVWFI_					0	0	0			REV__ENSG00000260458|ENST00000567955|KCNJ18	REV__ENSG00000260458|ENST00000567955|KCNJ18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.77587890625	2	459.776014	917.537475	-0.24371	-0.00011205	-0.94199	-0.00043311	-1.1857	-0.00054516	459.7763250542379	14.64	1.8703	14.64	14.164	16.035	0					158	65	5	0	0	0	0.20676	1	888	888		41.817	1.8599	1	11358000	+		3080	18306	1591	1591	3891	3891					0.07540768633475636
AVAKHFVAL	9	Unmodified	_AVAKHFVAL_					0	0	0		CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI	CON__Q3ZBD7	CON__Q3ZBD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.247802734375	2	478.28982	954.565087	0.14503	6.9364E-05	-0.61248	-0.00029294	-0.46746	-0.00022358	478.2894111599666	33.052	0.30806	33.107	32.946	33.255	0.055309					15	10	2	0	0	0	0.22596	1	6390	6390		15.847	7.2539	1	66261		+	3081	236	1592	1592	3892	3892					0.08598671893707888
AVALARAGAK	10	Unmodified	_AVALARAGAK_					0	0	0			REV__ENST00000460575.1_1_1:68151090-68151810:+|nuORF	REV__ENST00000460575.1_1_1:68151090-68151810:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7767333984375	2	464.290351	926.566149	-0.19607	-9.1031E-05	0.41635	0.00019331	0.22029	0.00010228	464.290552030244	24.979	0.20779	24.948	24.89	25.098	-0.03141					9	6	2	0	0	0	0.31267	1	3911	3911		14.838	2.3067	1	31545	+		3082	21206	1593	1593	3893	3893					0.09992886262602951
AVALARAGAK	10	Unmodified	_AVALARAGAK_					0	0	0			REV__ENST00000460575.1_1_1:68151090-68151810:+|nuORF	REV__ENST00000460575.1_1_1:68151090-68151810:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	464.290351	926.566149	-0.052516	-2.4383E-05	0.16714	7.7602E-05	0.11463	5.3219E-05	464.2903477418898	24.933	0.27667	24.933	24.843	25.12	0	-0.0075502	-0.00012215	NaN	32.305	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33005	+		3083	21206	1593	1593							0.09992886262602951
AVALINAAIQK	11	Unmodified	_AVALINAAIQK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7681274414062	2	556.345323	1110.67609	0.56627	0.00031504	0.10877	6.0514E-05	0.67504	0.00037556	556.3452042023657	47.693	0.38308	47.693	47.44	47.823	0					34	13	3	0	0	0	0.2973	1	10881	10881		26.268	8.1218	1	651150			3084	4321	1594	1594	3894	3894					0.12518266811116519
AVALINAAIQK	11	Unmodified	_AVALINAAIQK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3455810546875	2	556.345323	1110.67609	0.56982	0.00031702	0.13688	7.6152E-05	0.7067	0.00039317	556.3453499289457	47.603	0.36936	47.646	47.455	47.824	0.04332					32	13	3	0	0	0	1.2417E-12	1	10811	10811		163.04	119.18	1	842790			3085	4321	1594	1594	3895	3895					0.12518266811116519
AVALINAAIQK	11	Unmodified	_AVALINAAIQK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	556.345323	1110.67609	0.56366	0.00031359	-0.052299	-2.9096E-05	0.51136	0.00028449	556.3452066491642	47.629	0.34692	47.676	47.456	47.803	0.04752	0.0044064	-0.00010034	NaN	163.04	32	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	829620			3086	4321	1594	1594							0.12518266811116519
AVALPLQTK	9	Unmodified	_AVALPLQTK_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1;ENST00000512719.5_1_4:155467261-155471460:-|nuORF	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.7947082519531	2	470.794935	939.575317	-0.1243	-5.8521E-05	-0.098774	-4.6502E-05	-0.22308	-0.00010502	470.79484115080874	41.073	0.92638	41.073	40.604	41.531	0					107	33	4	0	0	0	0.0045319	2	8789	8789;8839		90.135	44.435	1	5765900			3087	6558	1595	1595	3896;3897	3896					0.10311234828282068
AVALPLQTK	9	Unmodified	_AVALPLQTK_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1;ENST00000512719.5_1_4:155467261-155471460:-|nuORF	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.7947082519531	2	470.794935	939.575317	0.15383	7.2423E-05	-0.33414	-0.00015731	-0.18031	-8.489E-05	470.7947099250556	40.986	0.76799	41.076	40.743	41.511	0.090252					91	28	4	0	0	0	0.015027	2	8783	8783;8832		71.708	38.922	1	6191500			3088	6558	1595	1595	3898;3899	3898					0.10311234828282068
AVALPLQTK	9	Unmodified	_AVALPLQTK_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1;ENST00000512719.5_1_4:155467261-155471460:-|nuORF	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.794677734375	2	470.794935	939.575317	0.014059	6.6187E-06	-0.161	-7.5798E-05	-0.14694	-6.9179E-05	470.79478038637956	40.938	0.75568	41.034	40.721	41.477	0.096626					92	27	4	0	0	0	0.0091837	2	8761	8761;8811		80.676	42.5	1	5724600			3089	6558	1595	1595	3900;3901	3900					0.10311234828282068
AVALPVVYS	9	Unmodified	_AVALPVVYS_					0	0	0		ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7755126953125	2	459.768386	917.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.526	1	14.526	14.026	15.026	0								0	0	0	0.13521	1	752	752		38.151	0	1				3090	7274	1596	1596	3902	3902					0.06015857045611028
AVALPVVYS	9	Unmodified	_AVALPVVYS_					0	0	0		ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7750244140625	2	459.768386	917.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.601	1	14.535	14.035	15.035	-0.066068								0	0	0	0.13521	1	773	773		38.151	0	1				3091	7274	1596	1596	3903	3903					0.06015857045611028
AVALTCCWWPQ	11	Unmodified	_AVALTCCWWPQ_					0	0	0		ENSG00000152749|ENST00000376958|GPR180	ENSG00000152749|ENST00000376958|GPR180	ENSG00000152749|ENST00000376958|GPR180	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.53167724609375	3	426.531705	1276.57328	0.020822	8.8812E-06	-0.31261	-0.00013334	-0.29179	-0.00012446	426.5316162312786	23.652	1.2471	23.613	23.231	24.478	-0.038927					118	43	4	0	0	0	0.39802	1	3477	3477		6.2344	0.83165	1	1168400			3092	5037	1597	1597	3904	3904					-0.053938852434839646
AVANIVNSVK	10	Unmodified	_AVANIVNSVK_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.302734375	2	507.800749	1013.58694	0.55234	0.00028048	0.044877	2.2789E-05	0.59721	0.00030326	507.8007060824775	36.889	0.64256	36.889	36.616	37.259	0					57	22	4	0	0	0	2.2048E-05	2	7557	7554;7557		143.21	81.611	1	1079100			3093	609	1598	1598	3905;3906	3906					0.08069431851617992
AVANIVNSVK	10	Unmodified	_AVANIVNSVK_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.8009033203125	2	507.800749	1013.58694	0.39513	0.00020065	0.14868	7.5499E-05	0.5438	0.00027614	507.80076461556877	36.797	0.62701	36.885	36.566	37.193	0.087406					55	22	3	0	0	0	0.00015406	2	7516	7467;7516		132.13	86.395	1	1175300			3094	609	1598	1598	3907;3908	3908					0.08069431851617992
AVANIVNSVK	10	Unmodified	_AVANIVNSVK_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.8009948730469	2	507.800749	1013.58694	0.66667	0.00033853	0.01906	9.6789E-06	0.68573	0.00034821	507.80074392944516	36.776	0.51237	36.869	36.602	37.114	0.093018					47	18	3	0	0	0	0.00015406	2	7467	7467;7514		132.13	78.731	1	1145200			3095	609	1598	1598	3909;3910	3909					0.08069431851617992
AVARHLPTL	9	Unmodified	_AVARHLPTL_					0	0	0			REV__ENST00000463879.1_1_2:198001297-198175415:-|nuORF	REV__ENST00000463879.1_1_2:198001297-198175415:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2979736328125	2	489.298176	976.581799	0.20214	9.8907E-05	0.63905	0.00031269	0.84119	0.00041159	489.298343066215	19.725	0.58393	19.725	19.461	20.045	0					57	20	4	0	0	0	0.057976	1	2298	2298		49.933	2.1843	1	349330	+		3096	13105	1599	1599	3911	3911					0.09257172779643952
AVARKRWGK	9	Unmodified	_AVARKRWGK_					0	0	0			REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16	REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2583618164062	2	536.330342	1070.64613	0.42692	0.00022897	-1.7746	-0.00095179	-1.3477	-0.00072282	536.3293179343312	30.247	0.44889	30.275	30.131	30.58	0.027946					23	15	2	0	0	0	0.26145	1	5479	5479		2.0598	0.40713	1	107180	+		3097	16293	1600	1600	3912	3912					0.11363372656455795
AVARKRWGK	9	Unmodified	_AVARKRWGK_					0	0	0			REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16	REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	536.330342	1070.64613	0.56623	0.00030368	-1.9686	-0.0010558	-1.4023	-0.00075212	536.3292350878759	30.284	0.4369	30.284	30.088	30.525	0	0.0044996	-0.00011489	NaN	4.756	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118920	+		3098	16293	1600	1600							0.11363372656455795
AVARPALL	8	Unmodified	_AVARPALL_					0	0	0			REV__ENST00000228872.8_1_12:12870368-12870698:+|nuORF	REV__ENST00000228872.8_1_12:12870368-12870698:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2178955078125	2	405.763438	809.512323	-0.22178	-8.9989E-05	0.52488	0.00021298	0.3031	0.00012299	405.7634532813441	42.723	0.3824	42.808	42.648	43.03	0.085197					20	13	2	0	0	0	0.33245	1	9348	9348		19.439	0	1	91692	+		3099	19453	1601	1601	3913	3913					0.09994713830894852
AVARQAGIQ	9	Unmodified	_AVARQAGIQ_					0	0	0		ENSG00000115827|ENST00000375255|DCAF17;ENST00000468592.5_1_2:172300063-172325523:+|nuORF	ENSG00000115827|ENST00000375255|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.92193603515625	2	457.264333	912.514114	0.24382	0.00011149	-0.24636	-0.00011265	-0.0025391	-1.1611E-06	457.2641650505461	75.015	1.0377	75.015	74.731	75.769	0					66	36	2	0	0	0	0.24913	1	19324	19324		4.3292	0	1	515550			3100	2679	1602	1602	3914	3914					0.054357228488470355
AVASVIIYR	9	Unmodified	_AVASVIIYR_					0	0	0		ENSG00000143126|ENST00000271332|CELSR2	ENSG00000143126|ENST00000271332|CELSR2	ENSG00000143126|ENST00000271332|CELSR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2662353515625	2	496.300384	990.586216	0.5965	0.00029604	-0.71482	-0.00035476	-0.11832	-5.8721E-05	496.299885818359	44.922	0.63124	44.922	44.71	45.341	0					51	22	3	0	0	0	0.0020732	1	9969	9969		103.35	38.118	1	1086900			3101	4480	1603	1603	3915	3915					0.0905463720255284
AVASVIIYR	9	Unmodified	_AVASVIIYR_					0	0	0		ENSG00000143126|ENST00000271332|CELSR2	ENSG00000143126|ENST00000271332|CELSR2	ENSG00000143126|ENST00000271332|CELSR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.30035400390625	2	496.300384	990.586216	0.48615	0.00024127	-0.54759	-0.00027177	-0.06144	-3.0493E-05	496.30001891716313	44.82	0.66459	44.888	44.627	45.291	0.068569					52	23	3	0	0	0	0.0016361	1	9984	9984		114.65	39.72	1	1074000			3102	4480	1603	1603	3916	3916					0.0905463720255284
AVASVIIYR	9	Unmodified	_AVASVIIYR_					0	0	0		ENSG00000143126|ENST00000271332|CELSR2	ENSG00000143126|ENST00000271332|CELSR2	ENSG00000143126|ENST00000271332|CELSR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3005676269531	2	496.300384	990.586216	0.53816	0.00026709	-0.48761	-0.000242	0.050546	2.5086E-05	496.30007583207055	44.845	0.61562	44.92	44.669	45.284	0.075047					51	22	3	0	0	0	0.0016361	2	9978	9978;9996		114.65	39.72	1	1037700			3103	4480	1603	1603	3917;3918	3917					0.0905463720255284
AVASVTEILK	10	Unmodified	_AVASVTEILK_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.836669921875	2	515.810782	1029.60701	0.48681	0.0002511	0.47068	0.00024278	0.95749	0.00049388	515.8110147378245	49.36	0.38083	49.36	49.135	49.516	0					25	13	2	0	0	0	0.22071	1	11340	11340		32.037	7.0465	1	532830			3104	4132	1604	1604	3919	3919					0.09339182791563871
AVASVVLPAR	10	Unmodified	_AVASVVLPAR_					0	0	0		ENST00000485631.1_1_22:18189492-18210297:+|nuORF;nc|ENSG00000099968|Q9BXK5-4|BCL2L13;ENSG00000099968|ENST00000317582|BCL2L13	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.7961730957031	2	491.805834	981.597115	0.26816	0.00013188	-1.4563	-0.00071622	-1.1881	-0.00058434	491.8049446359496	41.209	0.43716	41.306	41.04	41.477	0.096626					37	15	3	0	0	0	0.012782	3	8846	8800;8846;8885		79.596	50.515	1	1619300			3105	11092	1605	1605	3920;3921;3922	3921					0.10558039576847023
AVASVVLPAR	10	Unmodified	_AVASVVLPAR_					0	0	0		ENST00000485631.1_1_22:18189492-18210297:+|nuORF;nc|ENSG00000099968|Q9BXK5-4|BCL2L13;ENSG00000099968|ENST00000317582|BCL2L13	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	491.805834	981.597115	0.21166	0.0001041	-1.9397	-0.00095397	-1.7281	-0.00084988	491.8046085078744	41.413	0.37939	41.413	41.175	41.555	0	0.052792	-0.00032875	NaN	79.596	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1197500			3106	11092	1605	1605							0.10558039576847023
AVASVVLPAR	10	Unmodified	_AVASVVLPAR_					0	0	0		ENST00000485631.1_1_22:18189492-18210297:+|nuORF;nc|ENSG00000099968|Q9BXK5-4|BCL2L13;ENSG00000099968|ENST00000317582|BCL2L13	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	491.805834	981.597115	0.24999	0.00012295	-1.5149	-0.00074501	-1.2649	-0.00062207	491.80491183310045	41.271	0.37591	41.361	41.135	41.511	0.090248	0.0013545	8.9173E-05	NaN	79.596	38	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1447600			3107	11092	1605	1605							0.10558039576847023
AVATKFVNK	9	Unmodified	_AVATKFVNK_					0	0	0		nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;ENST00000508717.1_1_5:14498631-14508016:+|nuORF;nc|ENSG00000038382|O75962-3|TRIO	nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2931213378906	2	489.292559	976.570566	0.15292	7.4823E-05	-0.66561	-0.00032568	-0.51269	-0.00025086	489.2924286900706	19.534	0.36108	19.534	19.294	19.655	0					29	12	3	0	0	0	0.0040516	1	2274	2274		93.938	32.581	1	310240			3108	590	1606	1606	3923	3923					0.0813435068552053
AVATKFVNK	9	Unmodified	_AVATKFVNK_					0	0	0		nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;ENST00000508717.1_1_5:14498631-14508016:+|nuORF;nc|ENSG00000038382|O75962-3|TRIO	nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.29302978515625	2	489.292559	976.570566	0.2962	0.00014493	-1.18	-0.00057738	-0.88382	-0.00043245	489.2921128314707	19.704	0.35411	19.588	19.375	19.729	-0.11592					28	11	3	0	0	0	0.003673	2	2334	2324;2334		96.936	35.578	1	255950			3109	590	1606	1606	3924;3925	3925					0.0813435068552053
AVATKFVNK	9	Unmodified	_AVATKFVNK_					0	0	0		nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;ENST00000508717.1_1_5:14498631-14508016:+|nuORF;nc|ENSG00000038382|O75962-3|TRIO	nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2930603027344	2	489.292559	976.570566	0.36179	0.00017702	-0.54971	-0.00026897	-0.18792	-9.1948E-05	489.2927572442432	19.664	0.36586	19.609	19.369	19.735	-0.055693					28	12	3	0	0	0	0.0028032	1	2303	2303		103.82	42.466	1	388310			3110	590	1606	1606	3926	3926					0.0813435068552053
AVAVGVAKGST	11	Unmodified	_AVAVGVAKGST_					0	0	0			REV__nc|ENSG00000074370|Q93084-4|ATP2A3	REV__nc|ENSG00000074370|Q93084-4|ATP2A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.27996826171875	2	480.279649	958.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.321	1	87.408	86.908	87.908	0.08709								0	0	0	0.36517	1	23013	23013		4.897	0.141	1		+		3111	13788	1607	1607	3927	3927					0.06381456443239131
AVAVPPLSGR	10	Unmodified	_AVAVPPLSGR_					0	0	0		ENST00000489867.1_3_1:8938869-8939151:-|nuORF	ENST00000489867.1_3_1:8938869-8939151:-|nuORF	ENST00000489867.1_3_1:8938869-8939151:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.8323669433594	2	483.790184	965.565815	-0.14315	-6.9253E-05	0.91153	0.00044099	0.76838	0.00037174	483.7905578126783	39.355	0.49267	39.355	38.988	39.48	0					18	17	2	0	0	0	0.31039	1	8300	8300		18.146	4.2403	1	102530			3112	11153	1608	1608	3928	3928					0.08165466542754984
AVAYSQAFQL	10	Unmodified	_AVAYSQAFQL_					0	0	0		ENST00000504334.5_1_17:48627490-48633020:+|nuORF;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20;ENST00000515619.1_1_17:48627622-48628299:+|nuORF;ENST00000505559.5_1_17:48627490-48628082:+|nuORF;ENST00000504265.5_1_17:48627490-48628667:+|nuORF;nc|ENSG00000006282|Q8TB22-4|SPATA20;ENST00000503063.5_1_17:48625445-48628667:+|nuORF	ENST00000504334.5_1_17:48627490-48633020:+|nuORF	ENST00000504334.5_1_17:48627490-48633020:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2977905273438	2	549.284931	1096.55531	0.45428	0.00024953	1.6923	0.00092955	2.1466	0.0011791	549.2859295011934	74.44	0.34738	74.493	74.324	74.671	0.052361					14	11	2	0	0	0	0.30958	2	19034	19034;19106		19.257	2.1441	1	278050			3113	356	1609	1609	3929;3930	3929					0.010894390976773138
AVCRVPPPPP	10	Unmodified	_AVCRVPPPPP_					0	0	0		ENST00000417819.5_1_X:19362058-19363912:+|nuORF	ENST00000417819.5_1_X:19362058-19363912:+|nuORF	ENST00000417819.5_1_X:19362058-19363912:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2748413085938	2	516.786587	1031.55862	0.072676	3.7558E-05	1.6258	0.00084018	1.6984	0.00087774	516.7875996681748	24.522	0.22565	24.483	24.366	24.591	-0.038927					11	7	2	0	0	0	0.31482	1	3759	3759		11.64	0.81637	1	65586			3114	10341	1610	1610	3931	3931					0.044104106706754465
AVDFQRRYK	9	Unmodified	_AVDFQRRYK_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.8225708007812	2	591.822547	1181.63054	0.60294	0.00035683	-1.4015	-0.00082947	-0.7986	-0.00047263	591.8217143725547	20.754	0.64561	20.702	20.472	21.118	-0.05291					47	22	3	0	0	0	0.25988	1	2638	2638		3.9444	0.3479	1	161360			3115	2568	1611	1611	3932	3932					0.04699041348749233
AVDFSLASLS	10	Unmodified	_AVDFSLASLS_					0	0	0		ENST00000463943.1_1_20:49457108-49457342:+|nuORF	ENST00000463943.1_1_20:49457108-49457342:+|nuORF	ENST00000463943.1_1_20:49457108-49457342:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8091735839844	2	505.263665	1008.51278	0.19198	9.7001E-05	-2.3163	-0.0011704	-2.1243	-0.0010734	505.2622268722421	31.083	0.65865	31.083	30.674	31.333	0					26	23	2	0	0	0	0.29038	1	5769	5769		24.021	3.5669	1	86381			3116	10776	1612	1612	3933	3933					0.008860439694331035
AVDFSREEWGL	11	Unmodified	_AVDFSREEWGL_					0	0	0		nc|ENSG00000171606|Q96GC6-2|ZNF274;ENSG00000171606|ENST00000617501|ZNF274;nc|ENSG00000171606|Q96GC6-3|ZNF274;nc|ENSG00000171606|Q96GC6-4|ZNF274;ENST00000595146.1_1_19:58722883-58724506:+|nuORF	nc|ENSG00000171606|Q96GC6-2|ZNF274	nc|ENSG00000171606|Q96GC6-2|ZNF274	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.2472229003906	3	436.878815	1307.61462	-1.0388	-0.00045383	-2.4053	-0.0010508	-3.4441	-0.0015047	437.210721322858	34.866	0.44629	34.944	34.807	35.254	0.077377					18	15	2	0	0	0	0.33182	1	6907	6907		3.0723	0	1	59028			3117	6562	1613	1613	3934	3934					-0.026887096788186682
AVDGQRQV	8	Unmodified	_AVDGQRQV_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;MSH2|p.K871Nfs*24|1|0.04|ENSG00000095002|chr2:47480849-47480850|-/TGTAAATG|frameshift_variant;ENSG00000095002|ENST00000233146|MSH2;MSH2|p.L805Hfs*4|1|0.08|ENSG00000095002|chr2:47478474-47478475|-/A|frameshift_variant;MSH2|p.T806Kfs*8|1|0.08|ENSG00000095002|chr2:47478475-47478476|-/AAAATGTGGTAACATA|frameshift_variant	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2477111816406	2	436.732866	871.451179	-1.0637	-0.00046455	-3.3363	-0.0014571	-4.4	-0.0019216	436.731736157292	34.605	0.17231	34.605	34.5	34.672	0					7	5	2	0	0	0	0.32886	1	6860	6860		21.747	3.6003	1	35838			3118	1444	1614	1614	3935	3935					0.010311570608109832
AVDPSSGHPR	10	Unmodified	_AVDPSSGHPR_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.7540283203125	2	511.75433	1021.49411	-0.013241	-6.776E-06	-0.079032	-4.0445E-05	-0.092273	-4.7221E-05	511.7542753096956	13.388	0.72554	13.388	13.147	13.872	0					63	25	4	0	0	0	0.24437	1	437	437		27.223	13.317	1	759140			3119	5830	1615	1615	3936	3936					-0.015780728817617273
AVDPSSGHPR	10	Unmodified	_AVDPSSGHPR_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.754150390625	2	511.75433	1021.49411	-0.095607	-4.8927E-05	-0.048539	-2.484E-05	-0.14415	-7.3767E-05	511.75432804542294	13.471	0.81144	13.371	13.097	13.908	-0.09929					71	28	4	0	0	0	0.10933	1	447	447		46.022	26.765	1	769510			3120	5830	1615	1615	3937	3937					-0.015780728817617273
AVDPVFQAK	9	Unmodified	_AVDPVFQAK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.3024597167969	2	487.768917	973.523281	-0.80921	-0.00039471	-0.18239	-8.8967E-05	-0.99161	-0.00048368	487.76904951940713	35.043	0.66591	35.118	34.763	35.429	0.075306					44	23	3	0	0	0	0.24289	1	6997	6997		18.146	5.6148	1	290750			3121	2621	1616	1616	3938	3938					0.03546071414518792
AVDSQILPK	9	Unmodified	_AVDSQILPK_					0	0	0		ENST00000456481.1_1_7:137407104-137407545:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6	ENST00000456481.1_1_7:137407104-137407545:+|nuORF	ENST00000456481.1_1_7:137407104-137407545:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.26531982421875	2	485.782025	969.549496	0.34973	0.00016989	3.1545	0.0015324	3.5042	0.0017023	485.781956087799	36.28	1.0682	36.28	35.719	36.787	0					86	38	4	0	0	0	0.20881	1	7247	7247		21.537	2.098	1	1591300			3122	1340	1617	1617	3939	3939					0.06350340585993308
AVDTAYVAK	9	Unmodified	_AVDTAYVAK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A;YIF1A|p.E166Afs*31|1|0.3|ENSG00000174851|chr11:66285521-66285525|CACCT/-|frameshift_variant;ENST00000376899.8_1_11:66054976-66056456:-|nuORF	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2526550292969	2	469.2531	936.491647	-0.038648	-1.8136E-05	-0.89374	-0.00041939	-0.93239	-0.00043753	469.2525995552556	25.265	0.7805	25.265	24.843	25.623	0					59	26	4	0	0	0	0.014206	2	3990	3990;4035		72.968	41.7	1	663820			3123	6823	1618	1618	3940;3941	3940					0.020860786605680914
AVDTAYVAK	9	Unmodified	_AVDTAYVAK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A;YIF1A|p.E166Afs*31|1|0.3|ENSG00000174851|chr11:66285521-66285525|CACCT/-|frameshift_variant;ENST00000376899.8_1_11:66054976-66056456:-|nuORF	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.25262451171875	2	469.2531	936.491647	-0.11905	-5.5863E-05	-0.88897	-0.00041715	-1.008	-0.00047301	469.2525987458229	25.308	0.78876	25.252	24.888	25.677	-0.055931					58	27	3	0	0	0	0.020233	2	4012	4012;4056		63.961	34.879	1	668390			3124	6823	1618	1618	3942;3943	3942					0.020860786605680914
AVDTAYVAK	9	Unmodified	_AVDTAYVAK_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A;YIF1A|p.E166Afs*31|1|0.3|ENSG00000174851|chr11:66285521-66285525|CACCT/-|frameshift_variant;ENST00000376899.8_1_11:66054976-66056456:-|nuORF	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.2525939941406	2	469.2531	936.491647	-0.18953	-8.8939E-05	-0.87424	-0.00041024	-1.0638	-0.00049918	469.25254738782394	25.343	0.81764	25.312	24.833	25.65	-0.031408					69	28	4	0	0	0	0.011693	2	4015	4015;4067		76.825	42.423	1	667560			3125	6823	1618	1618	3944;3945	3944					0.020860786605680914
AVEDAIARK	9	Unmodified	_AVEDAIARK_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18;ENST00000566317.1_1_16:88695075-88697704:+|nuORF	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7774658203125	2	486.777274	971.539994	0.10028	4.8813E-05	0.30864	0.00015024	0.40892	0.00019905	486.777279280546	19.47	0.66562	19.47	19.157	19.822	0					71	23	4	0	0	0	0.13748	2	2218	2218;2265		32.786	12.332	1	229280			3126	5361	1619	1619	3946;3947	3946					0.05308572300452852
AVEDAIARK	9	Unmodified	_AVEDAIARK_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18;ENST00000566317.1_1_16:88695075-88697704:+|nuORF	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7773132324219	2	486.777274	971.539994	0.24388	0.00011871	0.30016	0.00014611	0.54403	0.00026482	486.77719980444033	19.633	0.69537	19.517	19.205	19.9	-0.11592					69	23	4	0	0	0	0.064268	1	2280	2280		47.594	18.513	1	241280			3127	5361	1619	1619	3948	3948					0.05308572300452852
AVEDAIARK	9	Unmodified	_AVEDAIARK_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18;ENST00000566317.1_1_16:88695075-88697704:+|nuORF	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.77734375	2	486.777274	971.539994	0.32654	0.00015895	0.371	0.00018059	0.69753	0.00033954	486.7771414755578	19.597	0.75777	19.541	19.172	19.93	-0.055693					76	26	4	0	0	0	0.13748	1	2263	2263		32.786	12.332	1	225630			3128	5361	1619	1619	3949	3949					0.05308572300452852
AVEEPHFQK	9	Unmodified	_AVEEPHFQK_					0	0	0		ENST00000374736.7_1_9:107651396-107666018:-|nuORF	ENST00000374736.7_1_9:107651396-107666018:-|nuORF	ENST00000374736.7_1_9:107651396-107666018:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7748413085938	2	542.774731	1083.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.935	1	24.935	24.435	25.435	0								0	0	0	0.1351	1	3900	3900		38.176	18.919	1				3129	9899	1620	1620	3950	3950					-0.0035173156215932977
AVEFAQGLTL	10	Unmodified	_AVEFAQGLTL_					0	0	0			REV__nc|ENSG00000185046|Q7Z6G8-9|ANKS1B	REV__nc|ENSG00000185046|Q7Z6G8-9|ANKS1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.8003540039062	2	524.787307	1047.56006	0.5702	0.00029923	0.32474	0.00017042	0.89493	0.00046965	524.7873628688952	71.813	0.29953	71.813	71.664	71.963	0					21	10	3	0	0	0	0.18128	1	18258	18258		34.932	0	1	216560	+		3130	13652	1621	1621	3951	3951					0.038183232404207956
AVEFAQGLTL	10	Unmodified	_AVEFAQGLTL_					0	0	0			REV__nc|ENSG00000185046|Q7Z6G8-9|ANKS1B	REV__nc|ENSG00000185046|Q7Z6G8-9|ANKS1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7999267578125	2	524.787307	1047.56006	0.51418	0.00026983	0.30957	0.00016246	0.82375	0.00043229	524.7876081076562	71.766	0.48907	71.822	71.568	72.057	0.056572					27	17	2	0	0	0	0.26265	1	18275	18275		24.991	0	1	182970	+		3131	13652	1621	1621	3952	3952					0.038183232404207956
AVEGRPIPP	9	Unmodified	_AVEGRPIPP_					0	0	0		ENST00000568631.5_2_16:2317267-2317702:-|nuORF	ENST00000568631.5_2_16:2317267-2317702:-|nuORF	ENST00000568631.5_2_16:2317267-2317702:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.7789306640625	2	468.269084	934.523616	-0.0097578	-4.5693E-06	-1.5001	-0.00070244	-1.5098	-0.00070701	468.269035783857	35.5	0.76251	35.5	35.17	35.932	0					32	27	2	0	0	0	0.22596	1	7054	7054		21.747	10.106	1	208710			3132	12003	1622	1622	3953	3953					0.053734911343553904
AVEGRPIPP	9	Unmodified	_AVEGRPIPP_					0	0	0		ENST00000568631.5_2_16:2317267-2317702:-|nuORF	ENST00000568631.5_2_16:2317267-2317702:-|nuORF	ENST00000568631.5_2_16:2317267-2317702:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7789001464844	2	468.269084	934.523616	-0.33493	-0.00015684	-3.2464	-0.0015202	-3.5813	-0.001677	468.26911898836795	35.41	0.78125	35.487	35.141	35.922	0.077377					48	27	3	0	0	0	0.27532	1	6999	6999		12.532	1.7076	1	291680			3133	12003	1622	1622	3954	3954					0.053734911343553904
AVETLRRKMEK	11	Unmodified	_AVETLRRKMEK_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2627258300781	3	454.262494	1359.76565	-0.20478	-9.3022E-05	-0.73779	-0.00033515	-0.94256	-0.00042817	454.26236808200406	27.649	1.1642	27.638	27.374	28.538	-0.01156					118	40	5	0	0	0	0.38765	1	4796	4796		12.856	4.1042	1	3729000	+		3134	16569	1623	1623	3955	3955					0.10016153428205143
AVFDEYSPTAR	11	Unmodified	_AVFDEYSPTAR_					0	0	0			REV__nc|ENSG00000293316|O95397|PLEKHA8P1	REV__nc|ENSG00000293316|O95397|PLEKHA8P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.20361328125	3	419.203299	1254.58807	0.62116	0.00026039	-0.12231	-5.1272E-05	0.49886	0.00020912	419.20328645085715	56.029	1.119	56.1	55.675	56.794	0.070885					114	41	4	0	0	0	0.40332	1	13444	13444		8.7518	3.3491	1	8367100	+		3135	19555	1624	1624	3956	3956					-0.029043985701491692
AVFDGNYYY	9	Unmodified	_AVFDGNYYY_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2401123046875	2	556.24019	1110.46583	0.33584	0.00018681	-0.12933	-7.1941E-05	0.20651	0.00011487	556.2400147369796	62.829	0.73509	62.829	62.58	63.315	0					75	26	4	0	0	0	0.004681	1	15548	15548		88.954	35.378	1	1067000			3136	4119	1625	1625	3957	3957					-0.0849881558172001
AVFDGNYYY	9	Unmodified	_AVFDGNYYY_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2401733398438	2	556.24019	1110.46583	0.39249	0.00021832	-0.38286	-0.00021296	0.0096298	5.3565E-06	556.2399755235073	62.716	0.71169	62.811	62.57	63.282	0.095722					60	25	3	0	0	0	0.010453	1	15512	15512		78.728	34.321	1	965990			3137	4119	1625	1625	3958	3958					-0.0849881558172001
AVFDGNYYY	9	Unmodified	_AVFDGNYYY_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2402954101562	2	556.24019	1110.46583	0.20626	0.00011473	-0.094398	-5.2508E-05	0.11187	6.2225E-05	556.2400575928252	62.869	0.75504	62.861	62.57	63.325	-0.0085564					71	27	4	0	0	0	0.010453	1	15535	15535		78.728	25.152	1	994600			3138	4119	1625	1625	3959	3959					-0.0849881558172001
AVFDGNYYYY	10	Unmodified	_AVFDGNYYYY_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.7718505859375	2	637.771854	1273.52915	0.63865	0.00040731	-0.54096	-0.00034501	0.097695	6.2307E-05	637.7714451150069	68.82	0.5328	68.892	68.705	69.237	0.071938					38	19	3	0	0	0	0.045157	1	17369	17369		60.074	36.925	1	288780			3139	4119	1626	1626	3960	3960					-0.09666874864456076
AVFDGNYYYY	10	Unmodified	_AVFDGNYYYY_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.7716674804688	2	637.771854	1273.52915	0.59269	0.000378	-0.66961	-0.00042706	-0.076918	-4.9056E-05	637.7715268143054	68.912	0.50313	68.893	68.709	69.212	-0.019157					40	17	3	0	0	0	0.024835	1	17386	17386		66.457	42.436	1	312540			3140	4119	1626	1626	3961	3961					-0.09666874864456076
AVFDGNYYYY	10	Unmodified	_AVFDGNYYYY_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	637.771854	1273.52915	0.40554	0.00025864	-0.41561	-0.00026507	-0.010079	-6.4283E-06	637.7717868862866	68.878	0.4655	68.878	68.708	69.174	0	-0.0097786	0.00016572	NaN	66.457	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321240			3141	4119	1626	1626							-0.09666874864456076
AVFDKTLAELK	11	Unmodified	_AVFDKTLAELK_					0	0	0		ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ATF7IP|p.S888Lfs*22|1|0.46|ENSG00000171681|chr12:14460997-14460997|T/-|frameshift_variant;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2394104003906	3	412.239573	1233.69689	0.027326	1.1265E-05	-0.067932	-2.8004E-05	-0.040606	-1.6739E-05	412.23953008808024	48.927	0.52481	48.959	48.801	49.326	0.032043					43	18	3	0	0	0	0.36777	1	11244	11244		15.467	4.5676	1	901220			3142	61	1627	1627	3962	3962					0.08938812400128882
AVFDKTLAELK	11	Unmodified	_AVFDKTLAELK_					0	0	0		ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ATF7IP|p.S888Lfs*22|1|0.46|ENSG00000171681|chr12:14460997-14460997|T/-|frameshift_variant;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	412.239573	1233.69689	0.05993	2.4706E-05	-0.27155	-0.00011194	-0.21162	-8.7237E-05	412.23940229449363	48.981	0.69038	48.981	48.798	49.488	0	-0.035948	-0.00010925	NaN	15.467	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	765160			3143	61	1627	1627							0.08938812400128882
AVFDKTLAELK	11	Unmodified	_AVFDKTLAELK_					0	0	0		ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ATF7IP|p.S888Lfs*22|1|0.46|ENSG00000171681|chr12:14460997-14460997|T/-|frameshift_variant;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	412.239573	1233.69689	0.20723	8.543E-05	-0.30788	-0.00012692	-0.10064	-4.1489E-05	412.2393752872439	49.065	0.76961	49.11	48.851	49.621	0.044891	0.093384	-0.00015418	NaN	15.467	52	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	742220			3144	61	1627	1627							0.08938812400128882
AVFEEMSLK	9	Oxidation (M)	_AVFEEM(Oxidation (M))SLK_		AVFEEM(1)SLK		AVFEEM(81)SLK	0	0	1		ENSG00000113790|ENST00000231887|EHHADH;nc|ENSG00000113790|Q08426-2|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.2648315429688	2	535.26535	1068.51615	0.81113	0.00043417	-1.1023	-0.00059	-0.29113	-0.00015583	535.264726502171	37.054	0.74739	37.054	36.756	37.503	0					77	26	5	0	0	0	0.0091837	1	7639	7639		80.676	56.655	1	1452000			3145	2531	1628	1628	3963	3963		317			-0.015370292482430159
AVFEEMSLK	9	Oxidation (M)	_AVFEEM(Oxidation (M))SLK_		AVFEEM(1)SLK		AVFEEM(90)SLK	0	0	1		ENSG00000113790|ENST00000231887|EHHADH;nc|ENSG00000113790|Q08426-2|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.2647705078125	2	535.26535	1068.51615	0.41674	0.00022307	-0.68429	-0.00036628	-0.26754	-0.00014321	535.2648873986492	36.919	0.81587	37.006	36.682	37.498	0.087406					89	29	5	0	0	0	0.0045319	1	7590	7590		90.135	64.736	1	1403300			3146	2531	1628	1628	3964	3964		317			-0.015370292482430159
AVFEEMSLK	9	Oxidation (M)	_AVFEEM(Oxidation (M))SLK_		AVFEEM(1)SLK		AVFEEM(81)SLK	0	0	1		ENSG00000113790|ENST00000231887|EHHADH;nc|ENSG00000113790|Q08426-2|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.2647705078125	2	535.26535	1068.51615	0.74482	0.00039868	-0.71764	-0.00038413	0.027183	1.455E-05	535.2647831194885	36.922	0.70974	37.015	36.713	37.423	0.093018					66	25	4	0	0	0	0.0091837	1	7581	7581		80.676	59.805	1	1546600			3147	2531	1628	1628	3965	3965		317			-0.015370292482430159
AVFGVIGSQK	10	Unmodified	_AVFGVIGSQK_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.29010009765625	2	503.290017	1004.56548	0.31949	0.0001608	-0.24198	-0.00012178	0.077513	3.9012E-05	503.289922367941	43.26	0.53693	43.26	43.008	43.545	0					34	19	2	0	0	0	0.0045383	1	9494	9494		114.2	58.025	1	623200			3148	808	1629	1629	3966	3966					0.06338046822895649
AVFGVIGSQK	10	Unmodified	_AVFGVIGSQK_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	503.290017	1004.56548	0.19418	9.773E-05	0.025681	1.2925E-05	0.21986	0.00011066	503.28997028452505	43.085	0.51408	43.169	42.896	43.41	0.083996	-0.033688	0.00012214	NaN	114.2	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	797790			3149	808	1629	1629							0.06338046822895649
AVFILTDNISK	11	Unmodified	_AVFILTDNISK_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.8480834960938	2	610.847896	1219.68124	0.38904	0.00023765	-1.0731	-0.00065553	-0.6841	-0.00041788	610.8478686522395	58.186	0.69764	58.186	57.927	58.624	0					65	23	4	0	0	0	5.1464E-06	2	14082	14082;14135		128.87	93.937	1	983460			3150	2086	1630	1630	3967;3968	3967					0.08018525883085204
AVFILTDNISK	11	Unmodified	_AVFILTDNISK_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.8480834960938	2	610.847896	1219.68124	0.36164	0.00022091	-1.3646	-0.00083354	-1.0029	-0.00061263	610.8478049940566	58.06	0.63255	58.145	57.891	58.524	0.085621					70	22	4	0	0	0	5.0817E-13	1	14049	14049		173.14	115.42	1	1066700			3151	2086	1630	1630	3969	3969					0.08018525883085204
AVFILTDNISK	11	Unmodified	_AVFILTDNISK_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.84814453125	2	610.847896	1219.68124	0.58672	0.0003584	-1.6939	-0.0010347	-1.1072	-0.00067634	610.8476821544182	58.245	0.70049	58.228	57.953	58.653	-0.017197					70	25	4	0	0	0	1.3573E-12	3	14081	14081;14137;14189		161.44	111.89	1	930180			3152	2086	1630	1630	3970;3971;3972	3970					0.08018525883085204
AVFLSPEQGWL	11	Unmodified	_AVFLSPEQGWL_					0	0	0			REV__ENST00000319394.7_1_1:27634519-27634696:+|nuORF	REV__ENST00000319394.7_1_1:27634519-27634696:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.2320251464844	3	416.220401	1245.63937	0.030915	1.2868E-05	-0.67751	-0.00028199	-0.6466	-0.00026913	416.22020274748024	15.97	0.83526	15.908	15.547	16.382	-0.062533					85	28	4	0	0	0	0.40701	1	1233	1233		10.315	0.29897	1	301450	+		3153	19957	1631	1631	3973	3973					0.02637970194564332
AVFLVLMWCGL	11	Unmodified	_AVFLVLMWCGL_					0	0	0			REV__ENSG00000171867|ENST00000379440|PRNP	REV__ENSG00000171867|ENST00000379440|PRNP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.2358093261719	3	417.892462	1250.65556	-0.013813	-5.7724E-06	0.035659	1.4902E-05	0.021846	9.1294E-06	418.22687923719286	51.659	0.40541	51.659	51.536	51.941	0					21	14	2	0	0	0	0.32813	1	12071	12071		8.4443	0	1	247790	+		3154	17674	1632	1632	3974	3974					0.04025636835444857
AVFNLSDFVGK	11	Unmodified	_AVFNLSDFVGK_					0	0	0		nc|ENSG00000164638|Q7RTT9-2|SLC29A4;ENSG00000164638|ENST00000396872|SLC29A4;ENST00000439491.2_1_7:5338995-5342941:+|nuORF	nc|ENSG00000164638|Q7RTT9-2|SLC29A4	nc|ENSG00000164638|Q7RTT9-2|SLC29A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.8194580078125	2	598.819138	1195.62372	0.29266	0.00017525	1.1879	0.00071131	1.4805	0.00088656	598.8199807108962	69.402	0.74643	69.402	69.174	69.92	0					65	26	3	0	0	0	0.00031953	1	17519	17519		106.37	69.29	1	804070			3155	12806	1633	1633	3975	3975					0.03373683677500594
AVFNLSDFVGK	11	Unmodified	_AVFNLSDFVGK_					0	0	0		nc|ENSG00000164638|Q7RTT9-2|SLC29A4;ENSG00000164638|ENST00000396872|SLC29A4;ENST00000439491.2_1_7:5338995-5342941:+|nuORF	nc|ENSG00000164638|Q7RTT9-2|SLC29A4	nc|ENSG00000164638|Q7RTT9-2|SLC29A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.8193359375	2	598.819138	1195.62372	0.39265	0.00023513	1.3267	0.00079448	1.7194	0.0010296	598.8199398761753	69.423	0.78976	69.489	69.178	69.967	0.066048					78	27	4	0	0	0	0.00031953	2	17514	17514;17562		106.37	72.92	1	873800			3156	12806	1633	1633	3976;3977	3976					0.03373683677500594
AVFNLSDFVGK	11	Unmodified	_AVFNLSDFVGK_					0	0	0		nc|ENSG00000164638|Q7RTT9-2|SLC29A4;ENSG00000164638|ENST00000396872|SLC29A4;ENST00000439491.2_1_7:5338995-5342941:+|nuORF	nc|ENSG00000164638|Q7RTT9-2|SLC29A4	nc|ENSG00000164638|Q7RTT9-2|SLC29A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.8192138671875	2	598.819138	1195.62372	0.27879	0.00016694	1.234	0.00073893	1.5128	0.00090587	598.8199048421249	69.492	0.67438	69.47	69.239	69.913	-0.022087					60	24	3	0	0	0	0.00069591	1	17525	17525		101.12	67.671	1	1039400			3157	12806	1633	1633	3978	3978					0.03373683677500594
AVFPEGALTK	10	Unmodified	_AVFPEGALTK_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7894897460938	2	516.78985	1031.56515	0.55781	0.00028827	-0.41068	-0.00021224	0.14713	7.6034E-05	516.789583596652	45.4	1.6592	45.4	44.855	46.514	0					171	60	4	0	0	0	0.030754	4	10111	10074;10111;10158;10209		63.227	34.146	1	2451200			3158	4644	1634	1634	3979;3980;3981;3982	3980					0.050626271030296266
AVFPEGALTK	10	Unmodified	_AVFPEGALTK_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7899169921875	2	516.78985	1031.56515	0.45884	0.00023713	-0.15856	-8.1944E-05	0.30028	0.00015518	516.7897172218521	45.289	1.3749	45.348	44.834	46.209	0.059834					139	48	4	0	0	0	0.030754	2	10084	10036;10084		63.227	32.591	1	2840700			3159	4644	1634	1634	3983;3984	3984					0.050626271030296266
AVFPEGALTK	10	Unmodified	_AVFPEGALTK_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7899780273438	2	516.78985	1031.56515	0.37758	0.00019513	-0.10727	-5.5437E-05	0.27031	0.00013969	516.7897767538768	45.314	1.402	45.379	44.798	46.2	0.065048					132	51	3	0	0	0	0.022191	3	10114	10020;10067;10114		69.338	43.939	1	2933600			3160	4644	1634	1634	3985;3986;3987	3987					0.050626271030296266
AVFPFIGLGK	10	Unmodified	_AVFPFIGLGK_					0	0	0		ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1;ENST00000465624.5_1_3:158537406-158546768:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.778564453125	2	524.813128	1047.6117	0.5956	0.00031258	0.09524	4.9983E-05	0.69084	0.00036256	524.8129771634049	72.322	0.9718	72.322	71.989	72.961	0					74	35	3	0	0	0	0.2504	1	18447	18447		26.884	5.137	1	543560			3161	2846	1635	1635	3988	3988					0.08980111724986273
AVFPFIGLGK	10	Unmodified	_AVFPFIGLGK_					0	0	0		ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1;ENST00000465624.5_1_3:158537406-158546768:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.813232421875	2	524.813128	1047.6117	0.63692	0.00033426	0.019594	1.0283E-05	0.65651	0.00034455	524.8129102916648	72.297	0.89575	72.353	72.005	72.901	0.056572					74	32	3	0	0	0	0.27772	1	18424	18424		20.454	13.164	1	509350			3162	2846	1635	1635	3989	3989					0.08980111724986273
AVFPFIGLGK	10	Unmodified	_AVFPFIGLGK_					0	0	0		ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1;ENST00000465624.5_1_3:158537406-158546768:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7786865234375	2	524.813128	1047.6117	0.61118	0.00032076	-0.061566	-3.2311E-05	0.54962	0.00028845	524.8129428012465	72.387	0.89464	72.36	71.981	72.875	-0.027275					72	31	3	0	0	0	0.25875	1	18451	18451		32.305	16.458	1	534220			3163	2846	1635	1635	3990	3990					0.08980111724986273
AVFPFKPPQR	10	Unmodified	_AVFPFKPPQR_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8405151367188	2	593.840208	1185.66586	0.60945	0.00036191	-0.078879	-4.6841E-05	0.53057	0.00031507	593.8400392546612	44.456	1.0569	44.456	43.904	44.961	0					82	38	3	0	0	0	0.18562	1	9943	9943		34.402	23.578	1	914680			3164	3441	1636	1636	3991	3991					0.08045703876541666
AVFPFKPPQR	10	Unmodified	_AVFPFKPPQR_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8556518554688	2	593.840208	1185.66586	0.44145	0.00026215	0.21539	0.00012791	0.65684	0.00039006	593.8401723942502	44.336	1.1854	44.411	43.622	44.808	0.07505					94	43	4	0	0	0	0.15594	1	9796	9796		60.074	41.928	1	855460			3165	3441	1636	1636	3992	3992					0.08045703876541666
AVFPHEPWLR	10	Unmodified	_AVFPHEPWLR_					0	0	0		nc|ENSG00000007541|Q9BRB3-3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;nc|ENSG00000007541|Q9BRB3|PIGQ	nc|ENSG00000007541|Q9BRB3-3|PIGQ	nc|ENSG00000007541|Q9BRB3-3|PIGQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2358093261719	3	417.892619	1250.65603	-0.01002	-4.1874E-06	-0.1955	-8.1697E-05	-0.20552	-8.5884E-05	417.8924613107018	51.832	0.351	51.831	51.683	52.034	-0.00080872					20	12	2	0	0	0	0.31701	1	12099	12099		10.899	2.4547	1	244320			3166	383	1637	1637	3993	3993					0.040725158711666154
AVFPKPFVEK	10	Unmodified	_AVFPKPFVEK_					0	0	0		nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1;nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	nc|ENSG00000168781|Q6PFW1-7|PPIP5K1	nc|ENSG00000168781|Q6PFW1-7|PPIP5K1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3369750976562	2	581.336967	1160.65938	0.035548	2.0665E-05	-1.1216	-0.00065201	-1.086	-0.00063134	581.3371798545604	42.583	0.75743	42.583	42.251	43.008	0					76	27	4	0	0	0	0.17571	2	9280	9230;9280		35.612	15.888	1	544480			3167	6299	1638	1638	3994;3995	3995					0.0854776592516373
AVFPSLLTNPK	11	Unmodified	_AVFPSLLTNPK_					0	0	0		ENSG00000182481|ENST00000330459|KPNA2;ENST00000578492.5_1_17:62750240-62754721:-|nuORF	ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8453369140625	2	593.845156	1185.67576	0.28945	0.00017189	0.17466	0.00010372	0.46411	0.00027561	593.8452378548326	59.507	0.57265	59.507	59.215	59.787	0					46	19	3	0	0	0	0.006514	1	14495	14495		77.049	55.458	1	894380			3168	7294	1639	1639	3996	3996					0.09034847091265874
AVFPSLLTNPK	11	Unmodified	_AVFPSLLTNPK_					0	0	0		ENSG00000182481|ENST00000330459|KPNA2;ENST00000578492.5_1_17:62750240-62754721:-|nuORF	ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8452758789062	2	593.845156	1185.67576	0.379	0.00022506	0.011695	6.9449E-06	0.39069	0.00023201	593.8451011925429	59.367	0.64049	59.458	59.211	59.852	0.091305					51	22	3	0	0	0	0.0015209	1	14434	14434		89.609	66.872	1	1019000			3169	7294	1639	1639	3997	3997					0.09034847091265874
AVFPSLLTNPK	11	Unmodified	_AVFPSLLTNPK_					0	0	0		ENSG00000182481|ENST00000330459|KPNA2;ENST00000578492.5_1_17:62750240-62754721:-|nuORF	ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8453979492188	2	593.845156	1185.67576	0.55608	0.00033023	-0.07219	-4.2869E-05	0.48389	0.00028736	593.8450938137606	59.497	0.61494	59.486	59.199	59.813	-0.011486					47	21	3	0	0	0	0.0023951	1	14488	14488		85.764	64.174	1	912080			3170	7294	1639	1639	3998	3998					0.09034847091265874
AVFQIILRR	9	Unmodified	_AVFQIILRR_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3566284179688	2	558.356025	1114.6975	0.52181	0.00029136	-0.17155	-9.5784E-05	0.35026	0.00019557	558.355817026375	51.153	0.74676	51.153	50.872	51.619	0					83	27	4	0	0	0	0.00012782	3	11877	11877;11928;11979		136.33	74.976	1	4766700			3171	889	1640	1640	3999;4000;4001	3999					0.14473696630534505
AVFQIILRR	9	Unmodified	_AVFQIILRR_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3563842773438	2	558.356025	1114.6975	0.43089	0.00024059	-0.085485	-4.7731E-05	0.3454	0.00019286	558.3559084559032	51.133	0.7172	51.18	50.929	51.647	0.046574					80	26	4	0	0	0	0.0018995	3	11867	11867;11912;11960		111.29	67.429	1	5087200			3172	889	1640	1640	4002;4003;4004	4002					0.14473696630534505
AVFQIILRR	9	Unmodified	_AVFQIILRR_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3561401367188	2	558.356025	1114.6975	0.43523	0.00024301	-1.2431	-0.00069409	-0.80785	-0.00045107	558.355092734161	51.179	1.074	51.189	50.567	51.641	0.0095634					111	40	5	0	0	0	0.00094673	3	11931	11887;11931;11981		123.45	73.518	1	4444600			3173	889	1640	1640	4005;4006;4007	4006					0.14473696630534505
AVFQIILRRK	10	Unmodified	_AVFQIILRRK_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8763427734375	3	415.27143	1242.79246	0.4527	0.00018799	-0.13408	-5.5681E-05	0.31861	0.00013231	415.27124147904044	41.844	0.42406	41.941	41.841	42.265	0.096622					21	14	2	0	0	0	0.32068	1	9080	9080		3.5871	0.95582	1	350350			3174	889	1641	1641	4008	4008					0.1807763010169765
AVFQIILRRK	10	Unmodified	_AVFQIILRRK_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	415.27143	1242.79246	-0.20439	-8.4878E-05	1.4362	0.0005964	1.2318	0.00051152	415.27198348169577	42.12	0.25505	42.12	41.996	42.251	0	0.089608	0.0010983	NaN	3.5871	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308410			3175	889	1641	1641							0.1807763010169765
AVFSSQGQSE	10	Unmodified	_AVFSSQGQSE_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3007202148438	2	520.238178	1038.4618	0.58433	0.00030399	-4.1892	-0.0021794	-3.6049	-0.0018754	520.2385377296349	63.871	0.4939	63.871	63.532	64.026	0					21	17	2	0	0	0	0.29519	1	15889	15889		15.847	4.7327	1	75616			3176	3962	1642	1642	4009	4009					-0.055889050754103664
AVFTIVFTQK	10	Unmodified	_AVFTIVFTQK_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3345336914062	2	577.334424	1152.6543	0.32402	0.00018707	0.62149	0.00035881	0.94551	0.00054587	577.3347637207503	62.472	0.53112	62.472	62.187	62.718	0					58	19	4	0	0	0	9.4622E-09	2	15401	15401;15445		168.54	120.79	1	1923500			3177	689	1643	1643	4010;4011	4010					0.08407462062541526
AVFTIVFTQK	10	Unmodified	_AVFTIVFTQK_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3347778320312	2	577.334424	1152.6543	0.39156	0.00022606	0.42993	0.00024821	0.82149	0.00047427	577.334628766774	62.35	0.65549	62.447	62.058	62.713	0.096985					59	23	4	0	0	0	1.5674E-06	2	15357	15357;15404		155.95	108.21	1	2050600			3178	689	1643	1643	4012;4013	4012					0.08407462062541526
AVFTIVFTQK	10	Unmodified	_AVFTIVFTQK_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.334716796875	2	577.334424	1152.6543	0.32343	0.00018673	0.68392	0.00039485	1.0074	0.00058158	577.3347857123254	62.477	0.56425	62.469	62.167	62.731	-0.0085526					64	20	4	0	0	0	9.4622E-09	2	15378	15378;15425		168.54	120.79	1	1695000			3179	689	1643	1643	4014;4015	4014					0.08407462062541526
AVFVKQLPK	9	Unmodified	_AVFVKQLPK_					0	0	0		nc|ENSG00000111058|Q9H6R3-2|ACSS3;ENSG00000111058|ENST00000548058|ACSS3	nc|ENSG00000111058|Q9H6R3-2|ACSS3	nc|ENSG00000111058|Q9H6R3-2|ACSS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.326171875	2	515.326402	1028.63825	0.54129	0.00027894	0.34712	0.00017888	0.88841	0.00045782	515.3266529352078	32.298	0.60761	32.354	32.206	32.814	0.055309					33	21	2	0	0	0	0.10197	1	6163	6163		37.974	22.127	1	156450			3180	2346	1644	1644	4016	4016					0.1250780061632213
AVFVKQLPK	9	Unmodified	_AVFVKQLPK_					0	0	0		nc|ENSG00000111058|Q9H6R3-2|ACSS3;ENSG00000111058|ENST00000548058|ACSS3	nc|ENSG00000111058|Q9H6R3-2|ACSS3	nc|ENSG00000111058|Q9H6R3-2|ACSS3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	515.326402	1028.63825	0.62545	0.00032231	-0.036787	-1.8957E-05	0.58867	0.00030336	515.3263088723578	32.434	0.35699	32.434	32.225	32.582	0	0.040232	-0.00010883	NaN	37.974	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171650			3181	2346	1644	1644							0.1250780061632213
AVGAPAVAGVR	11	Unmodified	_AVGAPAVAGVR_					0	0	0			REV__ENST00000357575.8_1_18:77663724-77663979:-|nuORF	REV__ENST00000357575.8_1_18:77663724-77663979:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2882080078125	2	484.287808	966.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.943	1	12.844	12.344	13.344	-0.099291								0	0	0	0.30488	1	279	279		18.146	1.0335	1		+		3182	20218	1645	1645	4017	4017					0.07644582399996125
AVGKFMPGK	9	Unmodified	_AVGKFMPGK_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.90802001953125	2	467.762581	933.510608	0.11246	5.2607E-05	3.9987	0.0018705	4.1112	0.0019231	467.76413820906566	19.373	0.25112	19.318	19.144	19.395	-0.055693					15	8	2	0	0	0	0.25526	1	2204	2204		7.9102	3.9658	1	27976	+		3183	18154	1646	1646	4018	4018					0.041193367506366485
AVGLVLPAK	9	Unmodified	_AVGLVLPAK_					0	0	0		nc|ENSG00000162496|O75911-2|DHRS3;ENSG00000162496|ENST00000616661|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.28656005859375	2	434.286746	866.558939	0.05043	2.1901E-05	-2.1634	-0.00093952	-2.1129	-0.00091762	434.28523608373985	44.382	1.4116	44.382	44.065	45.476	0					124	51	4	0	0	0	0.0041925	2	9807	9807;9855		92.822	35.351	1	6460500			3184	5576	1647	1647	4019;4020	4019					0.12032153662175915
AVGLVLPAK	9	Unmodified	_AVGLVLPAK_					0	0	0		nc|ENSG00000162496|O75911-2|DHRS3;ENSG00000162496|ENST00000616661|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	434.286746	866.558939	0.14857	6.4522E-05	-2.7488	-0.0011937	-2.6002	-0.0011292	434.28505021801203	44.36	1.1389	44.428	44.093	45.232	0.068573	0.023391	-0.00014466	NaN	92.822	112	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7921200			3185	5576	1647	1647							0.12032153662175915
AVGLVLPAK	9	Unmodified	_AVGLVLPAK_					0	0	0		nc|ENSG00000162496|O75911-2|DHRS3;ENSG00000162496|ENST00000616661|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	434.286746	866.558939	0.0013228	5.7446E-07	-2.5538	-0.0011091	-2.5524	-0.0011085	434.28510357994634	44.33	1.2457	44.405	44.067	45.312	0.075047	1.8506E-05	2.4696E-05	NaN	92.822	120	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7583200			3186	5576	1647	1647							0.12032153662175915
AVGLVLPAKL	10	Unmodified	_AVGLVLPAKL_					0	0	0		nc|ENSG00000162496|O75911-2|DHRS3;ENSG00000162496|ENST00000616661|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.82891845703125	2	490.828778	979.643003	0.40645	0.0001995	0.05435	2.6677E-05	0.4608	0.00022617	490.82890356499615	62.578	1.3417	62.578	62.266	63.607	0					141	49	5	0	0	0	0.0029259	5	15415	15415;15463;15514;15565;15639		103.75	35.668	1	13171000			3187	5576	1648	1648	4021;4022;4023;4024;4025	4021					0.15236684759088348
AVGLVLPAKL	10	Unmodified	_AVGLVLPAKL_					0	0	0		nc|ENSG00000162496|O75911-2|DHRS3;ENSG00000162496|ENST00000616661|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.828857421875	2	490.828778	979.643003	0.42543	0.00020881	-0.0069078	-3.3906E-06	0.41852	0.00020542	490.8288482005889	62.496	1.2581	62.593	62.254	63.512	0.096985					131	45	4	0	0	0	0.0048568	5	15376	15376;15422;15464;15511;15563		92.491	31.134	1	12913000			3188	5576	1648	1648	4026;4027;4028;4029;4030	4026					0.15236684759088348
AVGLVLPAKL	10	Unmodified	_AVGLVLPAKL_					0	0	0		nc|ENSG00000162496|O75911-2|DHRS3;ENSG00000162496|ENST00000616661|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	nc|ENSG00000162496|O75911-2|DHRS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.8289794921875	2	490.828778	979.643003	0.36596	0.00017962	0.03486	1.711E-05	0.40082	0.00019673	490.82887995252264	62.534	1.72	62.526	62.191	63.911	-0.0085526					138	62	4	0	0	0	0.0048568	4	15397	15397;15441;15493;15552		92.491	31.134	1	13423000			3189	5576	1648	1648	4031;4032;4033;4034	4031					0.15236684759088348
AVGNIKVTK	9	Unmodified	_AVGNIKVTK_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2924499511719	2	465.292559	928.570566	-0.19598	-9.1189E-05	-0.11642	-5.417E-05	-0.3124	-0.00014536	465.29239807111486	18.766	0.59047	18.766	18.535	19.125	0					40	20	3	0	0	0	0.17696	1	2034	2034		36.506	8.0194	1	98129			3190	1317	1649	1649	4035	4035					0.10342350685505153
AVGNIKVTK	9	Unmodified	_AVGNIKVTK_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.292236328125	2	465.292559	928.570566	-0.17407	-8.0994E-05	-0.20192	-9.3951E-05	-0.37599	-0.00017495	465.29236220854654	18.865	0.64268	18.748	18.501	19.144	-0.11739					43	22	3	0	0	0	0.14786	1	2062	2062		31.268	5.869	1	125460			3191	1317	1649	1649	4036	4036					0.10342350685505153
AVGNIKVTK	9	Unmodified	_AVGNIKVTK_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2921447753906	2	465.292559	928.570566	-0.10445	-4.86E-05	-0.32367	-0.0001506	-0.42812	-0.0001992	465.292332512223	18.81	0.59966	18.752	18.57	19.17	-0.058174					43	20	3	0	0	0	0.1426	1	2048	2048		32.037	9.3012	1	139410			3192	1317	1649	1649	4037	4037					0.10342350685505153
AVGPHLTAK	9	Unmodified	_AVGPHLTAK_					0	0	0		ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.26361083984375	2	447.263802	892.513051	0.080937	3.62E-05	-0.42669	-0.00019084	-0.34575	-0.00015464	447.2634665463241	18.548	1.015	18.548	18.051	19.066	0					83	35	3	0	0	0	0.0037449	1	1975	1975		96.367	45.512	1	437630			3193	7529	1650	1650	4038	4038					0.06249508479936594
AVGPHLTAK	9	Unmodified	_AVGPHLTAK_					0	0	0		ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.2636413574219	2	447.263802	892.513051	-0.013194	-5.9011E-06	-0.26438	-0.00011825	-0.27758	-0.00012415	447.26353550810956	18.695	1.0579	18.578	18.117	19.175	-0.11739					82	36	3	0	0	0	0.059987	1	2029	2029		70.332	28.237	1	420210			3194	7529	1650	1650	4039	4039					0.06249508479936594
AVGPHLTAK	9	Unmodified	_AVGPHLTAK_					0	0	0		ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.2635192871094	2	447.263802	892.513051	-0.092403	-4.1329E-05	-0.21407	-9.5745E-05	-0.30647	-0.00013707	447.2635397479647	18.657	0.99888	18.598	18.171	19.17	-0.058174					79	34	3	0	0	0	0.0054984	1	2012	2012		86.332	34.063	1	408090			3195	7529	1650	1650	4040	4040					0.06249508479936594
AVGSVVGQIAK	11	Unmodified	_AVGSVVGQIAK_					0	0	0		nc|ENSG00000106853|Q14914-2|PTGR1;ENSG00000106853|ENST00000407693|PTGR1	nc|ENSG00000106853|Q14914-2|PTGR1	nc|ENSG00000106853|Q14914-2|PTGR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2601318359375	2	514.808574	1027.60259	0.60626	0.00031211	-0.5833	-0.00030029	0.022954	1.1817E-05	514.8083410555993	37.652	0.47398	37.652	37.452	37.926	0					24	16	2	0	0	0	0.22653	1	7772	7772		47.732	3.9596	1	252860			3196	2105	1651	1651	4041	4041					0.0898971836866167
AVGSVVGQIAK	11	Unmodified	_AVGSVVGQIAK_					0	0	0		nc|ENSG00000106853|Q14914-2|PTGR1;ENSG00000106853|ENST00000407693|PTGR1	nc|ENSG00000106853|Q14914-2|PTGR1	nc|ENSG00000106853|Q14914-2|PTGR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.26025390625	2	514.808574	1027.60259	0.30472	0.00015687	-0.44463	-0.0002289	-0.13991	-7.2028E-05	514.8084327122962	37.563	0.45911	37.651	37.471	37.93	0.08741					27	16	2	0	0	0	0.25745	1	7750	7750		38.615	10.986	1	276050			3197	2105	1651	1651	4042	4042					0.0898971836866167
AVHDSFLYY	9	Unmodified	_AVHDSFLYY_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7640380859375	2	557.763832	1113.51311	0.55581	0.00031001	-0.12749	-7.1109E-05	0.42832	0.0002389	557.7636246754361	54.098	0.68592	54.098	53.776	54.462	0					79	24	4	0	0	0	0.029841	4	12841	12792;12841;12894;12928		60.39	31.903	1	4261500			3198	1183	1652	1652	4043;4044;4045;4046	4044					-0.03910536310718271
AVHDSFLYY	9	Unmodified	_AVHDSFLYY_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7639770507812	2	557.763832	1113.51311	0.42222	0.0002355	-0.0061415	-3.4255E-06	0.41608	0.00023207	557.7637061290638	54.037	0.6857	54.101	53.773	54.459	0.063202					82	25	4	0	0	0	0.015402	3	12822	12771;12822;12900		71.134	42.647	1	4692300			3199	1183	1652	1652	4047;4048;4049	4048					-0.03910536310718271
AVHDSFLYY	9	Unmodified	_AVHDSFLYY_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7640380859375	2	557.763832	1113.51311	0.44941	0.00025067	0.074806	4.1724E-05	0.52422	0.00029239	557.763769673898	54.353	0.67606	54.337	54.057	54.734	-0.015923					78	23	4	0	0	0	0.013258	3	12899	12856;12899;12950		74.423	36.272	1	5146200			3200	1183	1652	1652	4050;4051;4052	4051					-0.03910536310718271
AVHFPSGP	8	Unmodified	_AVHFPSGP_					0	0	0			REV__nc|ENSG00000132768|Q9BQC3-3|DPH2	REV__nc|ENSG00000132768|Q9BQC3-3|DPH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5716857910156	2	406.208495	810.402438	-0.051088	-2.0752E-05	0.080262	3.2603E-05	0.029175	1.1851E-05	406.20891347571677	32.784	0.38656	32.839	32.73	33.117	0.055309					25	13	3	0	0	0	0.34147	1	6270	6270		6.3541	0	1	87099	+		3201	15587	1653	1653	4053	4053					-0.010347115082822711
AVHGRLSALYK	11	Unmodified	_AVHGRLSALYK_					0	0	0			REV__nc|ENSG00000073536|Q9NVX2-2|NLE1	REV__nc|ENSG00000073536|Q9NVX2-2|NLE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.2364196777344	3	405.571657	1213.69314	-0.15301	-6.2057E-05	1.8295	0.00074199	1.6765	0.00067993	405.5725340107594	22.015	0.37691	22.015	21.845	22.222	0					21	13	2	0	0	0	0.32719	1	3027	3027		14.218	4.0676	1	65126	+		3202	13776	1654	1654	4054	4054					0.0948418741693331
AVHLHFSLRQ	10	Unmodified	_AVHLHFSLRQ_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.1964416503906	3	403.228001	1206.66217	-0.32613	-0.00013151	-1.4741	-0.00059439	-1.8002	-0.0007259	403.22779526434806	24.601	0.45121	24.57	24.314	24.765	-0.03141					29	15	3	0	0	0	0.31969	1	3793	3793		5.7834	0.38072	1	40270	+		3203	16663	1655	1655	4055	4055					0.06711034102681879
AVHLYELLK	9	Unmodified	_AVHLYELLK_					0	0	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENSG00000178425|ENST00000319550|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2883911132812	2	543.321317	1084.62808	0.61198	0.0003325	-1.1316	-0.00061481	-0.51961	-0.00028231	543.3215959388474	49.509	0.40741	49.509	49.243	49.65	0					21	14	2	0	0	0	0.24471	1	11431	11431		17.113	4.5813	1	105170			3204	7056	1656	1656	4056	4056					0.08915192891072365
AVHPQFKEIQK	11	Unmodified	_AVHPQFKEIQK_					0	0	0		ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2;nc|ENSG00000063241|Q96AB3-3|ISOC2	ENSG00000063241|ENST00000425675|ISOC2	ENSG00000063241|ENST00000425675|ISOC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2490234375	3	442.250583	1323.72992	0.16502	7.2979E-05	-2.7562	-0.0012189	-2.5912	-0.0011459	442.24876924422165	24.239	0.56875	24.2	23.909	24.478	-0.038927					32	19	2	0	0	0	0.36722	1	3682	3682		15.538	8.5014	1	115830			3205	773	1657	1657	4057	4057					0.08100439242844004
AVHPQFKEIQK	11	Unmodified	_AVHPQFKEIQK_					0	0	0		ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2;nc|ENSG00000063241|Q96AB3-3|ISOC2	ENSG00000063241|ENST00000425675|ISOC2	ENSG00000063241|ENST00000425675|ISOC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	442.250583	1323.72992	0.086443	3.823E-05	-2.289	-0.0010123	-2.2026	-0.00097409	442.24866004389	24.083	0.80147	24.083	23.593	24.395	0	-0.058237	0.00026885	NaN	15.538	50	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123250			3206	773	1657	1657							0.08100439242844004
AVIDQGLITR	10	Unmodified	_AVIDQGLITR_					0	0	0		ENSG00000278615|ENST00000524958|C11orf98;ENST00000532786.2_1_11:62430524-62432598:-|nuORF;ENST00000354588.7_1_11:62430524-62435168:-|nuORF	ENSG00000278615|ENST00000524958|C11orf98	ENSG00000278615|ENST00000524958|C11orf98	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2869262695312	2	543.319306	1084.62406	0.81591	0.0004433	-1.54	-0.00083671	-0.72408	-0.00039341	543.3185205442628	45.471	0.50752	45.531	45.195	45.703	0.059834					25	17	2	0	0	0	0.31094	1	10204	10204		19.626	7.3853	1	496020			3207	8745	1658	1658	4058	4058					0.08513103397376653
AVIDQGLITR	10	Unmodified	_AVIDQGLITR_					0	0	0		ENSG00000278615|ENST00000524958|C11orf98;ENST00000532786.2_1_11:62430524-62432598:-|nuORF;ENST00000354588.7_1_11:62430524-62435168:-|nuORF	ENSG00000278615|ENST00000524958|C11orf98	ENSG00000278615|ENST00000524958|C11orf98	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2868041992188	2	543.319306	1084.62406	0.71637	0.00038922	-1.9712	-0.001071	-1.2549	-0.00068179	543.3183511319666	45.486	0.37264	45.551	45.33	45.703	0.065048					27	13	3	0	0	0	0.31433	1	10194	10194		10.899	3.6097	1	422460			3208	8745	1658	1658	4059	4059					0.08513103397376653
AVIDVGINR	9	Unmodified	_AVIDVGINR_					0	0	0		ENSG00000065911|ENST00000394053|MTHFD2;nc|ENSG00000065911|P13995-2|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7799072265625	2	478.779816	955.545079	-0.11938	-5.7157E-05	0.30275	0.00014495	0.18337	8.7793E-05	478.77994758669627	42.535	0.98183	42.535	42.251	43.233	0					99	35	4	0	0	0	8.4618E-08	2	9225	9225;9273		176.84	73.089	1	6561400			3209	828	1659	1659	4060;4061	4060					0.0655287616308442
AVIDVGINR	9	Unmodified	_AVIDVGINR_					0	0	0		ENSG00000065911|ENST00000394053|MTHFD2;nc|ENSG00000065911|P13995-2|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7798156738281	2	478.779816	955.545079	0.18661	8.9345E-05	-0.21383	-0.00010238	-0.027216	-1.3031E-05	478.7797055215177	42.397	0.85007	42.482	42.18	43.03	0.085197					95	30	5	0	0	0	4.3828E-07	2	9237	9192;9237		163.04	59.288	1	5762500			3210	828	1659	1659	4062;4063	4063					0.0655287616308442
AVIDVGINR	9	Unmodified	_AVIDVGINR_					0	0	0		ENSG00000065911|ENST00000394053|MTHFD2;nc|ENSG00000065911|P13995-2|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7798156738281	2	478.779816	955.545079	0.26312	0.00012598	-0.23121	-0.0001107	0.031911	1.5278E-05	478.7796959546284	42.313	0.91807	42.404	42.124	43.043	0.091362					93	32	4	0	0	0	1.2283E-05	2	9214	9170;9214		155.03	40.818	1	6068700			3211	828	1659	1659	4064;4065	4065					0.0655287616308442
AVIDVGINR	9	Unmodified	_AVIDVGINR_					0	0	0		ENSG00000065911|ENST00000394053|MTHFD2;nc|ENSG00000065911|P13995-2|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7928466796875	2	478.779816	955.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.013	1	43.105	42.605	43.605	0.091362								0	0	0	0.15136	1	9401	9401		34.402	1.616	1				3212	828	1659	1659	4066	4066					0.0655287616308442
AVIEHLKQK	9	Unmodified	_AVIEHLKQK_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;BPTF|p.A3017Efs*15|1|0.04|ENSG00000171634|chr17:67975903-67975904|-/AATATTCT|frameshift_variant;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.324462890625	2	533.324391	1064.63423	0.35693	0.00019036	0.1366	7.2854E-05	0.49353	0.00026321	533.3243331184673	16.287	0.42846	16.287	16.093	16.521	0					34	14	3	0	0	0	0.053988	1	1287	1287		51.415	26.424	1	107080			3213	79	1660	1660	4067	4067					0.1044971112262374
AVIEHLKQK	9	Unmodified	_AVIEHLKQK_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;BPTF|p.A3017Efs*15|1|0.04|ENSG00000171634|chr17:67975903-67975904|-/AATATTCT|frameshift_variant;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.324462890625	2	533.324391	1064.63423	0.14164	7.554E-05	0.33288	0.00017753	0.47452	0.00025307	533.3243717433455	16.38	0.45681	16.265	16.075	16.532	-0.11434					38	15	3	0	0	0	0.086462	1	1317	1317		40.239	19.825	1	119180			3214	79	1660	1660	4068	4068					0.1044971112262374
AVIEHLKQK	9	Unmodified	_AVIEHLKQK_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;BPTF|p.A3017Efs*15|1|0.04|ENSG00000171634|chr17:67975903-67975904|-/AATATTCT|frameshift_variant;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.324462890625	2	533.324391	1064.63423	0.39419	0.00021023	0.091197	4.8637E-05	0.48539	0.00025887	533.3242489445759	16.348	0.43207	16.285	16.094	16.526	-0.062534					38	14	3	0	0	0	0.07944	1	1307	1307		41.956	23.809	1	132990			3215	79	1660	1660	4069	4069					0.1044971112262374
AVIENLPKK	9	Unmodified	_AVIENLPKK_					0	0	0		DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant;ENSG00000178105|ENST00000322536|DDX10	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3134460449219	2	506.313492	1010.61243	0.14617	7.4009E-05	-0.32298	-0.00016353	-0.17681	-8.9519E-05	506.3132456004667	25.897	0.47467	25.897	25.714	26.189	0					32	16	3	0	0	0	0.0079761	1	4181	4181		82.529	27.756	1	372470			3216	260	1661	1661	4070	4070					0.1075490637402936
AVIENLPKK	9	Unmodified	_AVIENLPKK_					0	0	0		DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant;ENSG00000178105|ENST00000322536|DDX10	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.3133544921875	2	506.313492	1010.61243	0.064988	3.2904E-05	-0.46547	-0.00023568	-0.40049	-0.00020277	506.31321741858056	25.887	0.43141	25.848	25.638	26.069	-0.038671					24	14	2	0	0	0	0.012386	1	4190	4190		75.761	29.74	1	321800			3217	260	1661	1661	4071	4071					0.1075490637402936
AVIENLPKK	9	Unmodified	_AVIENLPKK_					0	0	0		DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant;ENSG00000178105|ENST00000322536|DDX10	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.3131103515625	2	506.313492	1010.61243	0.17682	8.9529E-05	-0.18396	-9.314E-05	-0.0071334	-3.6117E-06	506.31325640900775	25.966	0.44267	25.944	25.691	26.133	-0.022238					34	15	3	0	0	0	0.0059482	1	4196	4196		85.642	37.893	1	370660			3218	260	1661	1661	4072	4072					0.1075490637402936
AVIGADSVTLK	11	Unmodified	_AVIGADSVTLK_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000477860.1_1_17:30200326-30200766:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.313720703125	2	537.313689	1072.61282	0.44424	0.0002387	0.38207	0.00020529	0.82631	0.00044399	537.3137666868074	43.668	0.59845	43.668	43.414	44.013	0					63	21	4	0	0	0	0.00018352	2	9578	9578;9622		108.26	62.522	1	3779900			3219	2204	1662	1662	4073;4074	4073					0.07942281303235177
AVIGADSVTLK	11	Unmodified	_AVIGADSVTLK_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000477860.1_1_17:30200326-30200766:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.31396484375	2	537.313689	1072.61282	0.46441	0.00024953	-0.027498	-1.4775E-05	0.43691	0.00023476	537.3136013265832	43.538	0.62646	43.615	43.373	43.999	0.077515					64	22	4	0	0	0	0.00018352	2	9589	9543;9589		108.26	62.522	1	3701700			3220	2204	1662	1662	4075;4076	4076					0.07942281303235177
AVIGADSVTLK	11	Unmodified	_AVIGADSVTLK_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000477860.1_1_17:30200326-30200766:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.31396484375	2	537.313689	1072.61282	0.59426	0.0003193	0.0030812	1.6556E-06	0.59734	0.00032096	537.313598166516	43.488	0.59007	43.572	43.327	43.917	0.083992					66	21	4	0	0	0	1.6471E-05	2	9572	9522;9572		118.21	72.47	1	3829700			3221	2204	1662	1662	4077;4078	4078					0.07942281303235177
AVIGHFNGK	9	Unmodified	_AVIGHFNGK_					0	0	0		nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1	nc|ENSG00000153250|P29558-2|RBMS1	nc|ENSG00000153250|P29558-2|RBMS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7615661621094	2	471.761426	941.5083	0.21402	0.00010097	-0.091677	-4.3249E-05	0.12235	5.7718E-05	471.7613715992632	21.866	0.62768	21.766	21.498	22.125	-0.10034					33	22	2	0	0	0	0.1659	1	2952	2952		36.044	12.896	1	168190			3222	5070	1663	1663	4079	4079					0.035206243371817436
AVIGHFNGK	9	Unmodified	_AVIGHFNGK_					0	0	0		nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1	nc|ENSG00000153250|P29558-2|RBMS1	nc|ENSG00000153250|P29558-2|RBMS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.76116943359375	2	471.761426	941.5083	0.15253	7.1956E-05	-0.20847	-9.8349E-05	-0.055945	-2.6393E-05	471.761259281843	21.743	0.60005	21.694	21.52	22.12	-0.049377					36	21	2	0	0	0	0.1939	1	2942	2942		30.637	5.2372	1	171360			3223	5070	1663	1663	4080	4080					0.035206243371817436
AVIGHFNGK	9	Unmodified	_AVIGHFNGK_					0	0	0		nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1	nc|ENSG00000153250|P29558-2|RBMS1	nc|ENSG00000153250|P29558-2|RBMS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	471.761426	941.5083	0.06512	3.0721E-05	-0.1851	-8.7322E-05	-0.11998	-5.6601E-05	471.76132394197845	21.765	0.52796	21.765	21.517	22.045	0	0.023108	-3.7663E-05	NaN	36.044	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137760			3224	5070	1663	1663							0.035206243371817436
AVIGNVQEK	9	Unmodified	_AVIGNVQEK_					0	0	0		nc|ENSG00000124786|Q9H1N7-3|SLC35B3;ENSG00000124786|ENST00000644923|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.271484375	2	479.271824	956.529095	0.05227	2.5052E-05	-0.19197	-9.2008E-05	-0.1397	-6.6956E-05	479.27161299308904	23.92	0.57878	23.92	23.669	24.248	0					45	19	3	0	0	0	0.069258	1	3568	3568		45.74	14.472	1	337520			3225	3182	1664	1664	4081	4081					0.049091699261907706
AVIGNVQEK	9	Unmodified	_AVIGNVQEK_					0	0	0		nc|ENSG00000124786|Q9H1N7-3|SLC35B3;ENSG00000124786|ENST00000644923|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2711486816406	2	479.271824	956.529095	0.20974	0.00010052	-0.3507	-0.00016808	-0.14096	-6.7557E-05	479.27149346857254	24.065	0.5698	23.993	23.728	24.298	-0.072559					43	18	3	0	0	0	0.086462	1	3606	3606		40.239	10.399	1	419130			3226	3182	1664	1664	4082	4082					0.049091699261907706
AVIGNVQEK	9	Unmodified	_AVIGNVQEK_					0	0	0		nc|ENSG00000124786|Q9H1N7-3|SLC35B3;ENSG00000124786|ENST00000644923|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2706604003906	2	479.271824	956.529095	0.29584	0.00014179	-0.49178	-0.0002357	-0.19594	-9.391E-05	479.2714520101237	24.024	0.5411	23.985	23.765	24.306	-0.038927					45	18	3	0	0	0	0.017549	1	3603	3603		67.838	22.139	1	369510			3227	3182	1664	1664	4083	4083					0.049091699261907706
AVIIMAVEK	9	Oxidation (M)	_AVIIM(Oxidation (M))AVEK_		AVIIM(1)AVEK		AVIIM(69)AVEK	0	0	1		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2886962890625	2	495.288628	988.562703	0.50497	0.00025011	-2.4104	-0.0011939	-1.9055	-0.00094376	495.2882369609705	37.166	0.64711	37.259	37.06	37.707	0.093018					45	23	3	0	0	0	0.016723	1	7618	7618		69.105	25.247	1	303520			3228	1896	1665	1665	4084	4084		233			0.06796455373739718
AVIIMAVEK	9	Oxidation (M)	_AVIIM(Oxidation (M))AVEK_					0	0	1		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	495.288628	988.562703	0.82591	0.00040906	-0.69437	-0.00034392	0.13154	6.5148E-05	495.2883770267914	37.292	0.38405	37.292	37.093	37.477	0	0.016381	0.00017098	NaN	69.105	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225620			3229	1896	1665	1665				233			0.06796455373739718
AVILHFFRGLL	11	Unmodified	_AVILHFFRGLL_					0	0	0		ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.2356262207031	3	429.264164	1284.77066	0.40893	0.00017554	-1.4504	-0.00062259	-1.0414	-0.00044705	429.2635671440728	56.295	0.2394	56.295	56.184	56.423	0					12	8	2	0	0	0	0.33122	1	13497	13497		2.4348	0	1	244140			3230	8612	1666	1666	4085	4085					0.13966825353145396
AVILRALSL	9	Unmodified	_AVILRALSL_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.3186340332031	2	478.318577	954.622602	0.19087	9.1296E-05	0.17671	8.4524E-05	0.36758	0.00017582	478.31863575163663	63.205	0.42984	63.205	62.984	63.413	0					30	15	2	0	0	0	0.0079761	1	15653	15653		82.529	26.352	1	627290			3231	8471	1667	1667	4086	4086					0.14347514099279124
AVILRALSL	9	Unmodified	_AVILRALSL_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.31866455078125	2	478.318577	954.622602	0.31714	0.00015169	-0.14602	-6.9845E-05	0.17112	8.1849E-05	478.318560517936	63.077	0.48821	63.173	62.957	63.445	0.095726					40	17	3	0	0	0	0.074552	1	15639	15639		43.772	10.987	1	563460			3232	8471	1667	1667	4087	4087					0.14347514099279124
AVILRALSL	9	Unmodified	_AVILRALSL_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	478.318577	954.622602	0.27308	0.00013062	-0.31824	-0.00015222	-0.045162	-2.1602E-05	478.31846773635624	63.197	0.52051	63.188	62.938	63.459	-0.0085564	-0.00056673	-0.0002522	NaN	82.529	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	503200			3233	8471	1667	1667							0.14347514099279124
AVIQVSQIVAR	11	Unmodified	_AVIQVSQIVAR_					0	0	0		ENST00000582074.5_1_17:79994229-79994802:-|nuORF;ENST00000578885.5_1_17:79994327-79995552:-|nuORF;ENSG00000169738|ENST00000306869|DCXR	ENST00000582074.5_1_17:79994229-79994802:-|nuORF	ENST00000582074.5_1_17:79994229-79994802:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.3616943359375	2	592.361505	1182.70846	0.83504	0.00049464	-0.17627	-0.00010441	0.65877	0.00039023	592.3613489775735	50.795	0.75294	50.795	50.544	51.297	0					75	27	4	0	0	0	7.4678E-26	2	11789	11789;11837		221.57	48.428	1	3220800			3234	6380	1668	1668	4088;4089	4088					0.12441054214127689
AVIQVSQIVAR	11	Unmodified	_AVIQVSQIVAR_					0	0	0		ENST00000582074.5_1_17:79994229-79994802:-|nuORF;ENST00000578885.5_1_17:79994327-79995552:-|nuORF;ENSG00000169738|ENST00000306869|DCXR	ENST00000582074.5_1_17:79994229-79994802:-|nuORF	ENST00000582074.5_1_17:79994229-79994802:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.3619384765625	2	592.361505	1182.70846	0.73337	0.00043442	-0.064778	-3.8372E-05	0.66859	0.00039605	592.3614049880351	50.787	0.95254	50.833	50.551	51.504	0.046574					80	35	4	0	0	0	3.4214E-34	3	11834	11784;11834;11900		232.63	50.396	1	3554600			3235	6380	1668	1668	4090;4091;4092	4091					0.12441054214127689
AVIQVSQIVAR	11	Unmodified	_AVIQVSQIVAR_					0	0	0		ENST00000582074.5_1_17:79994229-79994802:-|nuORF;ENST00000578885.5_1_17:79994327-79995552:-|nuORF;ENSG00000169738|ENST00000306869|DCXR	ENST00000582074.5_1_17:79994229-79994802:-|nuORF	ENST00000582074.5_1_17:79994229-79994802:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.3616943359375	2	592.361505	1182.70846	0.79559	0.00047128	-0.17412	-0.00010314	0.62147	0.00036813	592.3613561327455	50.81	0.80595	50.82	50.567	51.373	0.0095634					81	30	4	0	0	0	3.1073000000000003E-25	3	11821	11776;11821;11873		205.73	47.655	1	3803600			3236	6380	1668	1668	4093;4094;4095	4094					0.12441054214127689
AVIRALQNFSF	11	Unmodified	_AVIRALQNFSF_					0	0	0		nc|ENSG00000021461|Q9HB55-6|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43	nc|ENSG00000021461|Q9HB55-6|CYP3A43	nc|ENSG00000021461|Q9HB55-6|CYP3A43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5714416503906	3	422.571545	1264.69281	0.20552	8.6847E-05	-0.10437	-4.4105E-05	0.10115	4.2742E-05	422.5719589897994	45.734	1.6429	45.799	45.461	47.104	0.065048					201	58	6	0	0	0	0.25499	1	10370	10370		16.275	0	1	50961000			3237	507	1669	1669	4096	4096					0.07104767697069292
AVISGIWLDRS	11	Unmodified	_AVISGIWLDRS_					0	0	0		ENSG00000119686|ENST00000238667|FLVCR2;nc|ENSG00000119686|Q9UPI3-2|FLVCR2	ENSG00000119686|ENST00000238667|FLVCR2	ENSG00000119686|ENST00000238667|FLVCR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8377685546875	2	608.837862	1215.66117	0.2454	0.00014941	-0.2651	-0.0001614	-0.019691	-1.1989E-05	608.8375255550451	105.8	0.92616	105.8	105.37	106.29	0.0031738					349	133	3	0	0	0	0.45108	1	28072	28072		4.5289	0.93237	1	1060400			3238	2898	1670	1670	4097	4097					0.06196774943123273
AVISITLSRSS	11	Unmodified	_AVISITLSRSS_					0	0	0			REV__nc|ENSG00000006611|Q9Y6N9-3|USH1C	REV__nc|ENSG00000006611|Q9Y6N9-3|USH1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.329833984375	2	567.32987	1132.64519	0.24927	0.00014142	0.75973	0.00043102	1.009	0.00057243	567.3301009501672	80.463	2.8102	80.463	78.645	81.455	0					407	117	5	0	0	0	0.42762	1	20651	20651		7.609	7.609	1	5542900	+		3239	13365	1671	1671	4098	4098					0.08417068706239661
AVISITLSRSS	11	Unmodified	_AVISITLSRSS_					0	0	0			REV__nc|ENSG00000006611|Q9Y6N9-3|USH1C	REV__nc|ENSG00000006611|Q9Y6N9-3|USH1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3311767578125	2	567.32987	1132.64519	0.28492	0.00016164	0.37604	0.00021334	0.66095	0.00037498	567.3299030070093	80.442	2.8672	80.416	78.604	81.472	-0.026825					370	113	5	0	0	0	0.39802	1	21056	21056		11.495	11.495	1	5958500	+		3240	13365	1671	1671	4099	4099					0.08417068706239661
AVISITLSRSS	11	Unmodified	_AVISITLSRSS_					0	0	0			REV__nc|ENSG00000006611|Q9Y6N9-3|USH1C	REV__nc|ENSG00000006611|Q9Y6N9-3|USH1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3299560546875	2	567.32987	1132.64519	0.37678	0.00021376	-0.29089	-0.00016503	0.085891	4.8729E-05	567.3297156430638	82.255	3.9465	82.231	81.019	84.966	-0.02404					641	165	5	0	0	0	0.39802	2	21675	21675;21764		11.495	11.495	1	21005000	+		3241	13365	1671	1671	4100;4101	4100					0.08417068706239661
AVISTILKY	9	Unmodified	_AVISTILKY_					0	0	0		ENSG00000058063|ENST00000323116|ATP11B	ENSG00000058063|ENST00000323116|ATP11B	ENSG00000058063|ENST00000323116|ATP11B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.7533874511719	2	504.310418	1006.60628	0.2853	0.00014388	-0.02328	-1.174E-05	0.26202	0.00013214	504.31021090465816	57.789	0.85862	57.772	57.555	58.413	-0.017197					42	31	2	0	0	0	0.22674	1	13917	13917		22.736	2.2827	1	487700			3242	729	1672	1672	4102	4102					0.10324388142510088
AVIVLVENFYK	11	Unmodified	_AVIVLVENFYK_					0	0	0		ENSG00000188643|ENST00000368706|S100A16;ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENSG00000188643|ENST00000368706|S100A16	ENSG00000188643|ENST00000368706|S100A16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.8741455078125	2	647.873914	1293.73327	0.2783	0.0001803	0.17356	0.00011245	0.45186	0.00029275	647.8739260957881	69.434	1.2536	69.434	69.097	70.35	0					115	45	4	0	0	0	3.0802E-25	3	17559	17511;17559;17613		205.91	162.14	1	2982700			3243	7763	1673	1673	4103;4104;4105	4104					0.09815689296851815
AVIVLVENFYK	11	Unmodified	_AVIVLVENFYK_					0	0	0		ENSG00000188643|ENST00000368706|S100A16;ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENSG00000188643|ENST00000368706|S100A16	ENSG00000188643|ENST00000368706|S100A16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.874267578125	2	647.873914	1293.73327	0.28321	0.00018349	0.19652	0.00012732	0.47973	0.00031081	647.8739393816497	69.395	1.2628	69.461	69.094	70.357	0.066048					120	44	4	0	0	0	2.9086E-18	3	17528	17479;17528;17581		192.32	148.55	1	2704100			3244	7763	1673	1673	4106;4107;4108	4107					0.09815689296851815
AVIVLVENFYK	11	Unmodified	_AVIVLVENFYK_					0	0	0		ENSG00000188643|ENST00000368706|S100A16;ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENSG00000188643|ENST00000368706|S100A16	ENSG00000188643|ENST00000368706|S100A16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.8740234375	2	647.873914	1293.73327	0.2207	0.00014299	0.19265	0.00012481	0.41335	0.0002678	647.8739014662954	69.465	1.1251	69.443	69.092	70.217	-0.022087					122	40	5	0	0	0	9.6562E-26	3	17547	17499;17547;17596		220.1	168.47	1	2619800			3245	7763	1673	1673	4109;4110;4111	4110					0.09815689296851815
AVKKYFPEHI	10	Unmodified	_AVKKYFPEHI_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.8838806152344	3	411.232641	1230.67609	0.21586	8.8768E-05	4.0212	0.0016537	4.2371	0.0017424	411.23473939989344	19.94	0.58371	19.824	19.514	20.098	-0.11592					24	19	2	0	0	0	0.31745	1	2434	2434		2.086	0	1	59734	+		3246	16188	1674	1674	4112	4112					0.0699826681113791
AVKLGQLEEYP	11	Unmodified	_AVKLGQLEEYP_					0	0	0			REV__ENST00000555405.5_1_14:75551269-75558248:-|nuORF	REV__ENST00000555405.5_1_14:75551269-75558248:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.2276916503906	3	416.227444	1245.6605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.75	1	103.75	103.25	104.25	0								0	0	0	0.36335	1	27556	27556		2.4348	0.8425	1		+		3247	15049	1675	1675	4113	4113					0.04749935503446068
AVLCQHHKGRP	11	Unmodified	_AVLCQHHKGRP_					0	0	0		ENST00000531955.5_1_1:26759423-26764774:+|nuORF	ENST00000531955.5_1_1:26759423-26764774:+|nuORF	ENST00000531955.5_1_1:26759423-26764774:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.89410400390625	3	415.892624	1244.65604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.89	1	23.817	23.317	24.317	-0.072559								0	0	0	0.30959	1	3587	3587		9.7643	0	1				3248	11630	1676	1676	4114	4114					0.043501925995315105
AVLDALLASK	10	Unmodified	_AVLDALLASK_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S;ENST00000601097.1_1_19:17843916-17845234:+|nuORF	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2931213378906	2	500.8055	999.596446	0.45649	0.00022861	-0.37335	-0.00018698	0.083142	4.1638E-05	500.80550495515746	58.366	0.72474	58.366	58.075	58.8	0					49	24	3	0	0	0	0.024627	1	14119	14119		66.683	39.054	1	485210			3249	3478	1677	1677	4115	4115					0.09663200137140393
AVLDALLASK	10	Unmodified	_AVLDALLASK_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S;ENST00000601097.1_1_19:17843916-17845234:+|nuORF	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.29266357421875	2	500.8055	999.596446	0.38469	0.00019265	-0.44557	-0.00022314	-0.060878	-3.0488E-05	500.80549853446155	58.208	0.73666	58.294	57.997	58.734	0.085621					53	25	3	0	0	0	0.026238	1	14063	14063		64.927	38.659	1	502890			3250	3478	1677	1677	4116	4116					0.09663200137140393
AVLDALLASK	10	Unmodified	_AVLDALLASK_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S;ENST00000601097.1_1_19:17843916-17845234:+|nuORF	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8057556152344	2	500.8055	999.596446	0.71248	0.00035681	-0.32289	-0.00016171	0.38959	0.00019511	500.8055402683597	58.337	0.65098	58.323	57.98	58.631	-0.014271					48	23	3	0	0	0	0.041387	1	14136	14136		60.899	36.879	1	683560			3251	3478	1677	1677	4117	4117					0.09663200137140393
AVLDALLEGK	10	Unmodified	_AVLDALLEGK_					0	0	0		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A;ENSG00000131711|ENST00000296755|MAP1B	ENSG00000166963|ENST00000300231|MAP1A;ENSG00000131711|ENST00000296755|MAP1B	ENSG00000166963|ENST00000300231|MAP1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.802978515625	2	514.802957	1027.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.98	1	60.971	60.471	61.471	-0.0094566								0	0	0	0.030387	1	14941	14941		67.081	0.62406	1				3252	6135;3583	1678	1678	4118	4118					0.0786689627452688
AVLDFVKQK	9	Unmodified	_AVLDFVKQK_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.313720703125	2	524.313492	1046.61243	0.17172	9.0035E-05	0.24338	0.00012761	0.4151	0.00021764	524.3135809789494	38.662	1.0546	38.662	38.347	39.402	0					86	37	3	0	0	0	4.3828E-07	3	8084	8040;8084;8127		163.04	93.931	1	3464200			3253	7580	1679	1679	4119;4120;4121	4120					0.09098906374038052
AVLDFVKQK	9	Unmodified	_AVLDFVKQK_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3136596679688	2	524.313492	1046.61243	0.47977	0.00025155	-0.074699	-3.9166E-05	0.40507	0.00021239	524.3133741592646	38.543	0.90342	38.634	38.373	39.276	0.090881					85	32	3	0	0	0	4.3881E-05	3	8062	8019;8062;8113		149.91	80.809	1	3779800			3254	7580	1679	1679	4122;4123;4124	4123					0.09098906374038052
AVLDFVKQK	9	Unmodified	_AVLDFVKQK_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.313720703125	2	524.313492	1046.61243	0.59917	0.00031415	-0.24072	-0.00012622	0.35844	0.00018794	524.3133506571869	38.559	0.91384	38.657	38.32	39.234	0.097527					83	32	3	0	0	0	4.3881E-05	3	8047	8001;8047;8097		149.91	80.809	1	3857800			3255	7580	1679	1679	4125;4126;4127	4126					0.09098906374038052
AVLDKVKTK	9	Unmodified	_AVLDKVKTK_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.79534912109375	2	501.321317	1000.62808	0.23036	0.00011549	0.083689	4.1955E-05	0.31405	0.00015744	501.32134057880336	16.403	0.65165	16.403	15.981	16.632	0					41	22	3	0	0	0	0.18479	1	1307	1307		34.932	3.6637	1	134020			3256	669	1680	1680	4128	4128					0.12779192891082403
AVLDKVKTK	9	Unmodified	_AVLDKVKTK_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7953796386719	2	501.321317	1000.62808	0.14092	7.0647E-05	0.24994	0.0001253	0.39087	0.00019595	501.3213760110881	16.495	0.7362	16.381	15.987	16.723	-0.11434					50	25	4	0	0	0	0.14808	1	1339	1339		39.213	10.718	1	155390			3257	669	1680	1680	4129	4129					0.12779192891082403
AVLDLGSLLAK	11	Unmodified	_AVLDLGSLLAK_					0	0	0		nc|ENSG00000109794|A5PLN7-4|FAM149A;ENSG00000109794|ENST00000706927|FAM149A;nc|ENSG00000109794|A5PLN7|FAM149A	nc|ENSG00000109794|A5PLN7-4|FAM149A	nc|ENSG00000109794|A5PLN7-4|FAM149A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3399047851562	2	550.339707	1098.66486	0.44657	0.00024576	-0.066499	-3.6597E-05	0.38007	0.00020917	550.3396386924089	71.623	1.3779	71.623	71.318	72.696	0					134	49	5	0	0	0	7.4163E-13	4	18192	18192;18232;18277;18329		169.92	103.47	1	10277000			3258	2274	1681	1681	4130;4131;4132;4133	4130					0.1194744471699778
AVLDLGSLLAK	11	Unmodified	_AVLDLGSLLAK_					0	0	0		nc|ENSG00000109794|A5PLN7-4|FAM149A;ENSG00000109794|ENST00000706927|FAM149A;nc|ENSG00000109794|A5PLN7|FAM149A	nc|ENSG00000109794|A5PLN7-4|FAM149A	nc|ENSG00000109794|A5PLN7-4|FAM149A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.33984375	2	550.339707	1098.66486	0.4652	0.00025602	-0.10812	-5.9503E-05	0.35707	0.00019651	550.3396023066133	71.581	1.2732	71.638	71.269	72.542	0.056572					131	46	5	0	0	0	7.4163E-13	4	18207	18161;18207;18256;18308		169.92	103.47	1	10382000			3259	2274	1681	1681	4134;4135;4136;4137	4135					0.1194744471699778
AVLDLGSLLAK	11	Unmodified	_AVLDLGSLLAK_					0	0	0		nc|ENSG00000109794|A5PLN7-4|FAM149A;ENSG00000109794|ENST00000706927|FAM149A;nc|ENSG00000109794|A5PLN7|FAM149A	nc|ENSG00000109794|A5PLN7-4|FAM149A	nc|ENSG00000109794|A5PLN7-4|FAM149A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.33984375	2	550.339707	1098.66486	0.51193	0.00028173	-0.067274	-3.7023E-05	0.44465	0.00024471	550.3396034953604	71.699	1.3449	71.672	71.315	72.659	-0.027267					133	47	4	0	0	0	7.4163E-13	4	18193	18193;18237;18286;18357		169.92	103.47	1	8950300			3260	2274	1681	1681	4138;4139;4140;4141	4138					0.1194744471699778
AVLEKQDISDK	11	Unmodified	_AVLEKQDISDK_					0	0	0		ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.3380737304688	2	623.337892	1244.66123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.808	1	23.808	23.308	24.308	0								0	0	0	0.32235	1	3559	3559		21.241	13.086	1				3261	3923	1682	1682	4142	4142					0.04868730152452372
AVLEKQDISDK	11	Unmodified	_AVLEKQDISDK_					0	0	0		ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.337646484375	2	623.337892	1244.66123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.903	1	23.831	23.331	24.331	-0.072559								0	0	0	0.31702	1	3591	3591		23.016	10.775	1				3262	3923	1682	1682	4143	4143					0.04868730152452372
AVLEKQDISDK	11	Unmodified	_AVLEKQDISDK_					0	0	0		ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.89422607421875	3	415.894354	1244.66123	0.26885	0.00011182	-0.49319	-0.00020512	-0.22434	-9.3301E-05	416.56270826915886	23.824	1.1383	23.785	23.339	24.478	-0.038927					131	39	6	0	0	0	0.31096	1	3581	3581		21.241	21.241	1	685080			3263	3923	1682	1682	4144	4144					0.04868730152452372
AVLERQKAFLF	11	Unmodified	_AVLERQKAFLF_					0	0	0		nc|ENSG00000163288|P18505-2|GABRB1	nc|ENSG00000163288|P18505-2|GABRB1	nc|ENSG00000163288|P18505-2|GABRB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.260009765625	3	441.259079	1320.75541	0.6516	0.00028752	1.5741	0.00069461	2.2257	0.00098213	441.2598471700877	56.048	0.59718	56.119	55.88	56.477	0.070889					44	21	3	0	0	0	0.39244	1	13482	13482		12.228	2.4633	1	1413600			3264	12794	1683	1683	4145	4145					0.10785913765266741
AVLGPKETGSD	11	Unmodified	_AVLGPKETGSD_					0	0	0			REV__nc|ENSG00000069020|O15021-2|MAST4	REV__nc|ENSG00000069020|O15021-2|MAST4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2908325195312	2	537.277303	1072.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.813	1	43.897	43.397	44.397	0.083996								0	0	0	0.32418	1	9646	9646		13.906	1.3745	1		+		3265	13711	1684	1684	4146	4146					0.006685275098334387
AVLKFGKREF	10	Unmodified	_AVLKFGKREF_					0	0	0			REV__ENSG00000103024|ENST00000219302|NME3	REV__ENSG00000103024|ENST00000219302|NME3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8563842773438	2	597.853316	1193.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.243	1	95.241	94.741	95.741	-0.0020142								0	0	0	0.37739	1	25439	25439		3.2813	0.54611	1		+		3266	14347	1685	1685	4147	4147					0.10297973048045606
AVLKGVHSHKK	11	Unmodified	_AVLKGVHSHKK_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000582736.1_1_17:27047023-27047984:+|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.3695678710938	2	602.369664	1202.72478	0.22235	0.00013394	-0.33476	-0.00020165	-0.11241	-6.7713E-05	602.3695052742825	12.48	0.16785	12.383	12.295	12.463	-0.096606					12	5	3	0	0	0	0.45367	1	150	150		4.1895	1.691	1	48699			3267	8055	1686	1686	4148	4148					0.13152180170868633
AVLKHIENK	9	Unmodified	_AVLKHIENK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3165283203125	2	526.316566	1050.61858	0.21912	0.00011533	-0.10206	-5.3717E-05	0.11706	6.161E-05	526.3165123108404	15.11	0.39911	15.11	14.949	15.348	0					31	13	3	0	0	0	0.020233	1	927	927		63.961	38.561	1	176640			3268	5477	1687	1687	4149	4149					0.09529424605557324
AVLKHIENK	9	Unmodified	_AVLKHIENK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3162841796875	2	526.316566	1050.61858	0.2413	0.000127	-0.10885	-5.7289E-05	0.13246	6.9713E-05	526.3165058000404	15.204	0.35715	15.094	14.955	15.312	-0.10982					29	12	3	0	0	0	0.13296	1	969	969		33.445	15.299	1	123120			3269	5477	1687	1687	4150	4150					0.09529424605557324
AVLKHIENK	9	Unmodified	_AVLKHIENK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3165283203125	2	526.316566	1050.61858	0.21404	0.00011265	-0.089392	-4.7048E-05	0.12464	6.5603E-05	526.3164585570403	15.235	0.26397	15.171	15.041	15.305	-0.064413					16	8	2	0	0	0	0.032589	1	978	978		59.368	31.74	1	171500			3270	5477	1687	1687	4151	4151					0.09529424605557324
AVLKPEAWSRK	11	Unmodified	_AVLKPEAWSRK_					0	0	0		ENST00000407997.3_1_22:39473245-39473314:+|nuORF	ENST00000407997.3_1_22:39473245-39473314:+|nuORF	ENST00000407997.3_1_22:39473245-39473314:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.91876220703125	3	428.918945	1283.73501	-0.23904	-0.00010253	-0.20147	-8.6413E-05	-0.44051	-0.00018894	428.91887667037014	27.38	0.94608	27.38	27.007	27.954	0					88	32	4	0	0	0	0.10105	1	4653	4653		40.093	25.255	1	1430900			3271	10234	1688	1688	4152	4152					0.10448743105439462
AVLKPEAWSRK	11	Unmodified	_AVLKPEAWSRK_					0	0	0		ENST00000407997.3_1_22:39473245-39473314:+|nuORF	ENST00000407997.3_1_22:39473245-39473314:+|nuORF	ENST00000407997.3_1_22:39473245-39473314:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.91888427734375	3	428.918945	1283.73501	-0.27421	-0.00011761	-0.15409	-6.609E-05	-0.42829	-0.0001837	428.9188967209246	27.376	0.84909	27.354	26.985	27.834	-0.02141					88	29	4	0	0	0	0.13747	1	4627	4627		36.822	20.547	1	1448100			3272	10234	1688	1688	4153	4153					0.10448743105439462
AVLKPEAWSRK	11	Unmodified	_AVLKPEAWSRK_					0	0	0		ENST00000407997.3_1_22:39473245-39473314:+|nuORF	ENST00000407997.3_1_22:39473245-39473314:+|nuORF	ENST00000407997.3_1_22:39473245-39473314:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	428.918945	1283.73501	-0.24299	-0.00010422	-0.12482	-5.3539E-05	-0.36781	-0.00015776	428.91890126407117	27.377	0.99746	27.366	27.042	28.039	-0.01156	-0.0011693	4.5296E-05	NaN	40.093	84	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1628400			3273	10234	1688	1688							0.10448743105439462
AVLKPGAWSRK	11	Unmodified	_AVLKPGAWSRK_					0	0	0		ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.911865234375	3	404.911902	1211.71388	-0.13121	-5.313E-05	0.28288	0.00011454	0.15167	6.1411E-05	404.9120168146977	24.961	1.0135	24.961	24.639	25.652	0					79	34	4	0	0	0	0.18539	1	3922	3922		32.518	18.999	1	540660			3274	9293	1689	1689	4154	4154					0.11648777796585819
AVLKPGAWSRK	11	Unmodified	_AVLKPGAWSRK_					0	0	0		ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.9120178222656	3	404.911902	1211.71388	-0.27762	-0.00011241	0.52636	0.00021313	0.24875	0.00010072	404.9121000196375	25.034	0.79151	24.978	24.691	25.482	-0.055931					59	27	3	0	0	0	0.14892	1	3938	3938		35.793	17.93	1	512300			3275	9293	1689	1689	4155	4155					0.11648777796585819
AVLKPGAWSRK	11	Unmodified	_AVLKPGAWSRK_					0	0	0		ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	ENST00000308521.9_1_22:39436844-39436913:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.9119873046875	3	404.911902	1211.71388	-0.46903	-0.00018992	0.69978	0.00028335	0.23075	9.3434E-05	404.9121816948367	24.953	0.88829	24.922	24.627	25.515	-0.031408					70	30	4	0	0	0	0.19733	1	3933	3933		31.446	17.927	1	489380			3276	9293	1689	1689	4156	4156					0.11648777796585819
AVLLPQPPK	9	Unmodified	_AVLLPQPPK_					0	0	0		nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2262878417969	2	481.805303	961.596052	0.17133	8.2546E-05	0.46193	0.00022256	0.63325	0.0003051	481.80543484152435	43.389	1.1381	43.389	42.543	43.681	0					67	41	2	0	0	0	0.14099	1	9567	9567		42.095	7.9072	1	341330			3277	12765	1690	1690	4157	4157					0.11371825207936581
AVLLPQPPK	9	Unmodified	_AVLLPQPPK_					0	0	0		nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.27178955078125	2	481.805303	961.596052	0.34173	0.00016465	0.1358	6.5429E-05	0.47753	0.00023008	481.8052590925438	44.147	1.362	44.225	43.599	44.961	0.077515					129	50	3	0	0	0	0.1524	1	9592	9592		39.957	13.616	1	1090800			3278	12765	1690	1690	4158	4158					0.11371825207936581
AVLLPQPPK	9	Unmodified	_AVLLPQPPK_					0	0	0		nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2262268066406	2	481.805303	961.596052	0.33865	0.00016316	0.31567	0.00015209	0.65433	0.00031526	481.80533824706737	43.163	1.067	43.241	42.532	43.599	0.077518					63	38	2	0	0	0	0.14099	1	9512	9512		42.095	7.9072	1	354040			3279	12765	1690	1690	4159	4159					0.11371825207936581
AVLLPQPPK	9	Unmodified	_AVLLPQPPK_					0	0	0		nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.271728515625	2	481.805303	961.596052	0.29379	0.00014155	0.24556	0.00011831	0.53936	0.00025987	481.8052772967593	44.217	1.3983	44.292	43.513	44.911	0.075047					119	51	3	0	0	0	0.1524	1	9573	9573		39.957	7.8404	1	1129400			3280	12765	1690	1690	4160	4160					0.11371825207936581
AVLLPQPPK	9	Unmodified	_AVLLPQPPK_					0	0	0		nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2650146484375	2	481.805303	961.596052	0.19217	9.2591E-05	0.37464	0.0001805	0.56681	0.00027309	481.8053627976007	43.28	0.92145	43.364	42.6	43.522	0.083996					53	33	2	0	0	0	0.17611	1	9270	9270		34.102	1.9855	1	363320			3281	12765	1690	1690	4161	4161					0.11371825207936581
AVLLPQPPK	9	Unmodified	_AVLLPQPPK_					0	0	0		nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	481.805303	961.596052	0.25137	0.00012111	0.2687	0.00012946	0.52006	0.00025057	481.8052674227033	44.366	1.331	44.366	43.63	44.961	0	0.071969	5.9927E-05	NaN	32.305	113	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	885170			3282	12765	1690	1690							0.11371825207936581
AVLLVFANK	9	Unmodified	_AVLLVFANK_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000463733.5_1_7:127230086-127231350:+|nuORF;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000406466.2_1_7:94463564-94463681:+|nuORF	ENSG00000004059|ENST00000000233|ARF5;ENST00000406466.2_1_7:94463564-94463681:+|nuORF	ENSG00000004059|ENST00000000233|ARF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7585754394531	2	487.805303	973.596052	0.34923	0.00017035	-2.0925	-0.0010207	-1.7433	-0.00085038	487.80435835877034	55.624	0.52958	55.624	55.325	55.854	0					28	18	2	0	0	0	0.031932	1	13249	13249		53.576	23.351	1	930740			3283	306;10224	1691	1691	4162	4162					0.10819825207943268
AVLLVFANK	9	Unmodified	_AVLLVFANK_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000463733.5_1_7:127230086-127231350:+|nuORF;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000406466.2_1_7:94463564-94463681:+|nuORF	ENSG00000004059|ENST00000000233|ARF5;ENST00000406466.2_1_7:94463564-94463681:+|nuORF	ENSG00000004059|ENST00000000233|ARF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.75860595703125	2	487.805303	973.596052	0.51664	0.00025202	-2.2419	-0.0010936	-1.7253	-0.00084159	487.8043090623918	55.527	0.53307	55.598	55.347	55.88	0.070885					33	19	2	0	0	0	0.062269	1	13242	13242		53.576	30.427	1	971810			3284	306;10224	1691	1691	4163	4163					0.10819825207943268
AVLLVFANK	9	Unmodified	_AVLLVFANK_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000463733.5_1_7:127230086-127231350:+|nuORF;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000444561.2_1_17:43710417-43713807:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENST00000406466.2_1_7:94463564-94463681:+|nuORF	ENSG00000004059|ENST00000000233|ARF5;ENST00000406466.2_1_7:94463564-94463681:+|nuORF	ENSG00000004059|ENST00000000233|ARF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7587585449219	2	487.805303	973.596052	0.37732	0.00018406	-1.1008	-0.000537	-0.72353	-0.00035294	487.80473905373196	55.639	0.47466	55.62	55.379	55.853	-0.019081					38	17	3	0	0	0	0.025459	1	13264	13264		77.984	41.94	1	1107700			3285	306;10224	1691	1691	4164	4164					0.10819825207943268
AVLNNRFIK	9	Unmodified	_AVLNNRFIK_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7772827148438	2	537.824558	1073.63456	0.75235	0.00040463	0.89921	0.00048362	1.6516	0.00088825	537.825033255233	33.718	0.40522	33.718	33.564	33.969	0					34	14	3	0	0	0	0.20167	1	6612	6612		29.082	9.8246	1	305210			3286	4264	1692	1692	4165	4165					0.10069130842452978
AVLNNRFIK	9	Unmodified	_AVLNNRFIK_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7772827148438	2	537.824558	1073.63456	0.81766	0.00043976	1.1809	0.00063511	1.9986	0.0010749	537.8250698768474	33.581	0.41975	33.647	33.484	33.904	0.06636					30	14	3	0	0	0	0.14961	1	6523	6523		41.84	22.478	1	324200			3287	4264	1692	1692	4166	4166					0.10069130842452978
AVLNNRFIK	9	Unmodified	_AVLNNRFIK_					0	0	0		nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26;nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7774047851562	2	537.824558	1073.63456	0.33828	0.00018193	1.2596	0.00067743	1.5979	0.00085937	537.825182742807	33.573	0.4121	33.639	33.495	33.907	0.066704					31	14	3	0	0	0	0.1939	1	6527	6527		30.637	15.388	1	393300			3288	4264	1692	1692	4167	4167					0.10069130842452978
AVLPAVIPK	9	Unmodified	_AVLPAVIPK_					0	0	0		nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-6|WNK1	nc|ENSG00000060237|Q9H4A3-6|WNK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.73992919921875	2	454.302396	906.590239	0.1476	6.7055E-05	-0.15112	-6.8656E-05	-0.0035231	-1.6005E-06	454.30218373158294	49.986	0.62464	49.986	49.729	50.353	0					39	22	2	0	0	0	0.22596	1	11655	11655		10.824	3.5347	1	443780			3289	12578	1693	1693	4168	4168					0.13320726696269958
AVLPAVIPK	9	Unmodified	_AVLPAVIPK_					0	0	0		nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-6|WNK1	nc|ENSG00000060237|Q9H4A3-6|WNK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.7397766113281	2	454.302396	906.590239	0.43756	0.00019878	-0.46692	-0.00021212	-0.029359	-1.3338E-05	454.3019824632977	49.996	0.65622	50.041	49.776	50.433	0.044891					40	24	3	0	0	0	0.24311	1	11647	11647		11.64	3.7301	1	506400			3290	12578	1693	1693	4169	4169					0.13320726696269958
AVLPAVIPK	9	Unmodified	_AVLPAVIPK_					0	0	0		nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-6|WNK1	nc|ENSG00000060237|Q9H4A3-6|WNK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	454.302396	906.590239	0.38101	0.00017309	-0.4684	-0.00021279	-0.087387	-3.97E-05	454.30208291318314	49.961	0.5625	49.982	49.719	50.281	0.020691	-0.020847	-9.2396E-05	NaN	15.847	39	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432220			3291	12578	1693	1693							0.13320726696269958
AVLPRIWQ	8	Unmodified	_AVLPRIWQ_					0	0	0			REV__ENSG00000164168|ENST00000296582|TMEM184C	REV__ENSG00000164168|ENST00000296582|TMEM184C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.79510498046875	2	491.795269	981.575986	0.30866	0.0001518	0.23195	0.00011407	0.54062	0.00026587	491.79515505052404	41.697	1.5657	41.697	41.305	42.871	0					151	61	4	0	0	0	0.4397	2	8992	8992;9078		9.3474	0.75416	1	19845000	+		3292	17130	1694	1694	4170;4171	4170					0.08446074267999393
AVLPRIWQ	8	Unmodified	_AVLPRIWQ_					0	0	0			REV__ENSG00000164168|ENST00000296582|TMEM184C	REV__ENSG00000164168|ENST00000296582|TMEM184C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7950744628906	2	491.795269	981.575986	0.28504	0.00014018	0.34095	0.00016768	0.62599	0.00030786	491.7952102936452	41.463	1.4349	41.553	41.35	42.785	0.090252					137	56	4	0	0	0	0.43727	1	9041	9041		10.183	0	1	21505000	+		3293	17130	1694	1694	4172	4172					0.08446074267999393
AVLQAVIKR	9	Unmodified	_AVLQAVIKR_					0	0	0		ENST00000547967.5_1_12:56600233-56600953:-|nuORF;nc|ENSG00000181852|Q9H4P4-2|RNF41;ENSG00000181852|ENST00000345093|RNF41	ENST00000547967.5_1_12:56600233-56600953:-|nuORF	ENST00000547967.5_1_12:56600233-56600953:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.25885009765625	2	499.329476	996.6444	0.64744	0.00032329	-0.44588	-0.00022264	0.20156	0.00010065	499.32914927077195	32.331	0.35496	32.331	32.145	32.5	0					17	12	2	0	0	0	0.23784	1	6176	6176		19.257	8.4331	1	52084			3294	7256	1695	1695	4173	4173					0.1459431884784408
AVLQESVAK	9	Unmodified	_AVLQESVAK_					0	0	0		ENST00000438948.1_1_22:20287467-20300466:+|nuORF;nc|ENSG00000100033|O43272-2|PRODH;nc|ENSG00000100033|O43272-1|PRODH;ENSG00000100033|ENST00000357068|PRODH;ENST00000482858.5_1_22:18909836-18910458:-|nuORF;ENST00000399694.1_1_22:18909836-18910792:-|nuORF;ENST00000429300.5_1_22:18905996-18910521:-|nuORF;ENST00000491604.5_1_22:18909836-18923800:-|nuORF	ENST00000438948.1_1_22:20287467-20300466:+|nuORF	ENST00000438948.1_1_22:20287467-20300466:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7527160644531	2	472.7742	943.533846	0.011999	5.6729E-06	-0.17976	-8.4987E-05	-0.16776	-7.9314E-05	472.7742110256343	26.722	0.34252	26.722	26.528	26.871	0					15	11	2	0	0	0	0.2524	1	4406	4406		11.495	3.8858	1	55192			3295	1522	1696	1696	4174	4174					0.05982054068954312
AVLQESVAK	9	Unmodified	_AVLQESVAK_					0	0	0		ENST00000438948.1_1_22:20287467-20300466:+|nuORF;nc|ENSG00000100033|O43272-2|PRODH;nc|ENSG00000100033|O43272-1|PRODH;ENSG00000100033|ENST00000357068|PRODH;ENST00000482858.5_1_22:18909836-18910458:-|nuORF;ENST00000399694.1_1_22:18909836-18910792:-|nuORF;ENST00000429300.5_1_22:18905996-18910521:-|nuORF;ENST00000491604.5_1_22:18909836-18923800:-|nuORF	ENST00000438948.1_1_22:20287467-20300466:+|nuORF	ENST00000438948.1_1_22:20287467-20300466:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7527770996094	2	472.7742	943.533846	0.14892	7.0407E-05	-0.64574	-0.00030529	-0.49681	-0.00023488	472.77368457682684	26.725	0.30636	26.687	26.489	26.795	-0.038671					16	10	2	0	0	0	0.22674	1	4415	4415		22.736	6.8891	1	73176			3296	1522	1696	1696	4175	4175					0.05982054068954312
AVLQESVAK	9	Unmodified	_AVLQESVAK_					0	0	0		ENST00000438948.1_1_22:20287467-20300466:+|nuORF;nc|ENSG00000100033|O43272-2|PRODH;nc|ENSG00000100033|O43272-1|PRODH;ENSG00000100033|ENST00000357068|PRODH;ENST00000482858.5_1_22:18909836-18910458:-|nuORF;ENST00000399694.1_1_22:18909836-18910792:-|nuORF;ENST00000429300.5_1_22:18905996-18910521:-|nuORF;ENST00000491604.5_1_22:18909836-18923800:-|nuORF	ENST00000438948.1_1_22:20287467-20300466:+|nuORF	ENST00000438948.1_1_22:20287467-20300466:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7527160644531	2	472.7742	943.533846	0.41453	0.00019598	-0.64885	-0.00030676	-0.23431	-0.00011078	472.7739706537726	26.695	0.31061	26.673	26.53	26.841	-0.022238					15	10	2	0	0	0	0.24289	1	4418	4418		18.146	3.3081	1	67242			3297	1522	1696	1696	4176	4176					0.05982054068954312
AVLRWGGL	8	Unmodified	_AVLRWGGL_					0	0	0		ENST00000319092.5_1_1:117075690-117076050:-|nuORF	ENST00000319092.5_1_1:117075690-117076050:-|nuORF	ENST00000319092.5_1_1:117075690-117076050:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.24774169921875	2	436.261062	870.507572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.55	1	34.625	34.125	35.125	0.075306								0	0	0	0.35779	1	6825	6825		11.114	0	1				3298	9369	1697	1697	4177	4177					0.06713829688146689
AVLSFSLYR	9	Unmodified	_AVLSFSLYR_					0	0	0		ENSG00000140983|ENST00000315082|RHOT2;ENST00000568636.5_1_16:722693-723603:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2	ENSG00000140983|ENST00000315082|RHOT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2982177734375	2	528.297842	1054.58113	0.75994	0.00040147	-0.046992	-2.4826E-05	0.71295	0.00037665	528.2976452011873	60.903	0.5659	60.903	60.664	61.23	0					29	20	2	0	0	0	0.048637	1	14965	14965		53.404	5.6553	1	1285000			3299	4347	1698	1698	4178	4178					0.05602333339948018
AVLSFSLYR	9	Unmodified	_AVLSFSLYR_					0	0	0		ENSG00000140983|ENST00000315082|RHOT2;ENST00000568636.5_1_16:722693-723603:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2	ENSG00000140983|ENST00000315082|RHOT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.298095703125	2	528.297842	1054.58113	0.73423	0.00038789	0.15153	8.0054E-05	0.88577	0.00046795	528.2977447475917	60.956	0.44839	60.946	60.656	61.104	-0.0094566					27	16	2	0	0	0	0.0033458	1	14909	14909		110.67	45.44	1	959840			3300	4347	1698	1698	4179	4179					0.05602333339948018
AVLSFSLYR	9	Unmodified	_AVLSFSLYR_					0	0	0		ENSG00000140983|ENST00000315082|RHOT2;ENST00000568636.5_1_16:722693-723603:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2	ENSG00000140983|ENST00000315082|RHOT2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	528.297842	1054.58113	0.66686	0.0003523	0.33057	0.00017464	0.99743	0.00052694	528.2979708253902	60.857	0.44645	60.954	60.67	61.116	0.096989	0.019845	0.00020986	NaN	110.67	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	932330			3301	4347	1698	1698							0.05602333339948018
AVLSKSNILFN	11	Unmodified	_AVLSKSNILFN_					0	0	0			REV__ENST00000462566.1_1_21:34953586-34954315:-|nuORF	REV__ENST00000462566.1_1_21:34953586-34954315:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.3468627929688	2	603.348063	1204.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.578	1	93.578	93.078	94.078	0								0	0	0	0.36517	1	24929	24929		4.897	0.95262	1		+		3302	16838	1699	1699	4180	4180					0.08741945602946544
AVLTALDVLQK	11	Unmodified	_AVLTALDVLQK_					0	0	0		nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-2|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8474731445312	2	585.858264	1169.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.058	1	63.058	62.558	63.558	0								0	0	0	0.047681	1	15595	15595		57.204	37.947	1				3303	764	1700	1700	4181	4181					0.12391116262733703
AVLTALDVLQK	11	Unmodified	_AVLTALDVLQK_					0	0	0		nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-2|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8475341796875	2	585.858264	1169.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.066	1	63.058	62.558	63.558	-0.0085526								0	0	0	0.075292	1	15587	15587		48.073	21.805	1				3304	764	1700	1700	4182	4182					0.12391116262733703
AVLTRAVCVVF	11	Unmodified	_AVLTRAVCVVF_					0	0	0		nc|ENSG00000290649|Q8NH63|OR51H1	nc|ENSG00000290649|Q8NH63|OR51H1	nc|ENSG00000290649|Q8NH63|OR51H1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3426513671875	2	589.341726	1176.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.93	1	119.9	119.4	120.4	-0.024361								0	0	0	0.38146	1	30944	30944		0.96228	0.43751	1				3305	13010	1701	1701	4183	4183					0.0876321093903698
AVLVFVMYR	9	Oxidation (M)	_AVLVFVM(Oxidation (M))YR_		AVLVFVM(1)YR		AVLVFVM(64)YR	0	0	1		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.309814453125	2	557.309895	1112.60524	0.28557	0.00015915	-0.63584	-0.00035436	-0.35027	-0.00019521	557.3094158618827	59.049	0.82079	59.049	58.624	59.445	0					70	28	3	0	0	0	0.037153	1	14374	14374		64.236	64.236	1	588040			3306	4153	1702	1702	4184	4184		532			0.053438505019585136
AVLVFVMYR	9	Oxidation (M)	_AVLVFVM(Oxidation (M))YR_		AVLVFVM(1)YR		AVLVFVM(64)YR	0	0	1		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.309326171875	2	557.309895	1112.60524	0.3669	0.00020448	-0.75895	-0.00042297	-0.39205	-0.00021849	557.3092774536904	58.894	0.82265	58.985	58.612	59.434	0.091305					70	28	3	0	0	0	0.037153	1	14323	14323		64.236	43.822	1	600500			3307	4153	1702	1702	4185	4185		532			0.053438505019585136
AVLVFVMYR	9	Oxidation (M)	_AVLVFVM(Oxidation (M))YR_		AVLVFVM(1)YR		AVLVFVM(64)YR	0	0	1		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.309814453125	2	557.309895	1112.60524	0.33656	0.00018757	-0.87449	-0.00048736	-0.53793	-0.0002998	557.3092854352903	58.957	0.73848	58.943	58.631	59.37	-0.014267					56	25	3	0	0	0	0.037153	1	14296	14296		64.236	46.101	1	612250			3308	4153	1702	1702	4186	4186		532			0.053438505019585136
AVLWCVGYKFI	11	Unmodified	_AVLWCVGYKFI_					0	0	0			REV__ENST00000372890.5_2_9:131084637-131084700:-|nuORF	REV__ENST00000372890.5_2_9:131084637-131084700:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.91265869140625	3	433.570377	1297.6893	-0.37413	-0.00016221	-0.022986	-9.9658E-06	-0.39712	-0.00017218	433.57046616597233	15.068	0.95551	15.004	14.589	15.545	-0.064414					58	32	3	0	0	0	0.38623	1	917	917		7.0371	0	1	157420	+		3309	20425	1703	1703	4187	4187					0.052363815988655915
AVLYFLYK	8	Unmodified	_AVLYFLYK_					0	0	0		ENST00000528533.5_1_11:119180598-119181683:-|nuORF;ENST00000528976.1_1_11:119180930-119182089:-|nuORF;ENSG00000076706|ENST00000264036|MCAM	ENST00000528533.5_1_11:119180598-119181683:-|nuORF	ENST00000528533.5_1_11:119180598-119181683:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.77734375	2	508.794404	1015.57425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.834	1	47.878	47.378	48.378	0.04332								0	0	0	0.35466	1	10885	10885		12.532	0.89125	1				3310	1070	1704	1704	4188	4188					0.06709020459368276
AVLYQPLFDK	10	Unmodified	_AVLYQPLFDK_					0	0	0		ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1	ENST00000549988.5_1_12:76453547-76478450:-|nuORF	ENST00000549988.5_1_12:76453547-76478450:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3318481445312	2	597.331882	1192.64921	0.45013	0.00026887	-0.46201	-0.00027597	-0.011882	-7.0977E-06	597.3316520249317	57.904	1.476	57.904	57.605	59.081	0					154	51	5	0	0	0	1.0905E-08	5	13994	13951;13994;14046;14090;14194		166.77	105.41	1	20261000			3311	7664	1705	1705	4189;4190;4191;4192;4193	4190					0.060591581999460686
AVLYQPLFDK	10	Unmodified	_AVLYQPLFDK_					0	0	0		ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1	ENST00000549988.5_1_12:76453547-76478450:-|nuORF	ENST00000549988.5_1_12:76453547-76478450:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.33203125	2	597.331882	1192.64921	0.52377	0.00031286	-0.51828	-0.00030958	0.0054955	3.2826E-06	597.3316233273024	57.72	1.3792	57.806	57.491	58.87	0.085617					155	49	5	0	0	0	2.2048E-05	6	13944	13898;13944;13994;14047;14103;14160		143.21	81.856	1	20198000			3312	7664	1705	1705	4194;4195;4196;4197;4198;4199	4195					0.060591581999460686
AVLYQPLFDK	10	Unmodified	_AVLYQPLFDK_					0	0	0		ENST00000549988.5_1_12:76453547-76478450:-|nuORF;ENST00000550917.1_1_12:32879649-32880297:-|nuORF;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1	ENST00000549988.5_1_12:76453547-76478450:-|nuORF	ENST00000549988.5_1_12:76453547-76478450:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	597.331882	1192.64921	0.46916	0.00028025	-0.46825	-0.0002797	0.00091243	5.4502E-07	597.3316113672595	57.948	1.6107	57.93	57.582	59.193	-0.017197	0.050389	1.5356E-05	NaN	166.77	174	58	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21404000			3313	7664	1705	1705							0.060591581999460686
AVMAESAFSFK	11	Oxidation (M)	_AVM(Oxidation (M))AESAFSFK_		AVM(1)AESAFSFK		AVM(120)AESAFSFK	0	0	1		ENSG00000198612|ENST00000354371|COPS8;ENST00000392008.6_1_2:237994547-237995380:+|nuORF;ENST00000470452.5_1_2:237994547-238002319:+|nuORF	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.2892456054688	2	602.289356	1202.56416	0.37981	0.00022876	-0.20005	-0.00012049	0.17977	0.00010827	602.2890500712269	46.533	0.86272	46.533	46.222	47.084	0					79	30	4	0	0	0	1.2972E-05	3	10503	10456;10503;10590		121.5	81.554	1	2286600			3314	8095	1706	1706	4200;4201;4202	4201		880			-0.02901955328184158
AVMAESAFSFK	11	Oxidation (M)	_AVM(Oxidation (M))AESAFSFK_		AVM(1)AESAFSFK		AVM(120)AESAFSFK	0	0	1		ENSG00000198612|ENST00000354371|COPS8;ENST00000392008.6_1_2:237994547-237995380:+|nuORF;ENST00000470452.5_1_2:237994547-238002319:+|nuORF	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.2891845703125	2	602.289356	1202.56416	0.52695	0.00031737	-0.19998	-0.00012045	0.32696	0.00019693	602.2889823162649	46.347	0.83788	46.407	46.015	46.853	0.059834					74	30	3	0	0	0	9.3071E-06	2	10402	10402;10452		124.95	79.548	1	2082100			3315	8095	1706	1706	4203;4204	4203		880			-0.02901955328184158
AVMAESAFSFK	11	Oxidation (M)	_AVM(Oxidation (M))AESAFSFK_		AVM(1)AESAFSFK		AVM(130)AESAFSFK	0	0	1		ENSG00000198612|ENST00000354371|COPS8;ENST00000392008.6_1_2:237994547-237995380:+|nuORF;ENST00000470452.5_1_2:237994547-238002319:+|nuORF	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.2890625	2	602.289356	1202.56416	0.21587	0.00013002	0.019726	1.1881E-05	0.2356	0.0001419	602.2892497678407	46.513	0.7918	46.567	46.06	46.851	0.054375					80	28	4	0	0	0	1.6776E-06	4	10446	10397;10446;10495;10548		132.13	96.008	1	2137400			3316	8095	1706	1706	4205;4206;4207;4208	4206		880			-0.02901955328184158
AVMGAYVLLK	10	Oxidation (M)	_AVM(Oxidation (M))GAYVLLK_		AVM(1)GAYVLLK		AVM(110)GAYVLLK	0	0	1		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8098754882812	2	540.809728	1079.6049	0.73445	0.0003972	-0.64167	-0.00034702	0.092779	5.0176E-05	540.8096020249031	47.719	0.97691	47.719	47.44	48.417	0					86	34	6	0	0	0	0.0021971	2	10823	10823;10872		108	83.976	1	10139000			3317	6096	1707	1707	4209;4210	4209		712			0.06828430782093164
AVMGAYVLLK	10	Oxidation (M)	_AVM(Oxidation (M))GAYVLLK_		AVM(1)GAYVLLK		AVM(120)GAYVLLK	0	0	1		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8098754882812	2	540.809728	1079.6049	0.78806	0.00042619	-0.79398	-0.00042939	-0.0059141	-3.1984E-06	540.8095615219199	47.717	1.1487	47.765	47.4	48.549	0.04752					99	42	6	0	0	0	0.0010268	3	10895	10803;10849;10895		120.45	84.323	1	10741000			3318	6096	1707	1707	4211;4212;4213	4213		712			0.06828430782093164
AVMGAYVLLK	10	Oxidation (M)	_AVM(Oxidation (M))GAYVLLK_		AVM(1)GAYVLLK		AVM(110)GAYVLLK	0	0	1		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8099365234375	2	540.809728	1079.6049	0.81628	0.00044145	-0.7558	-0.00040874	0.060487	3.2712E-05	540.8095419528369	47.705	0.99716	47.748	47.401	48.398	0.04332					101	37	6	0	0	0	0.0021971	2	10798	10798;10848		108	83.976	1	11475000			3319	6096	1707	1707	4214;4215	4214		712			0.06828430782093164
AVMGNPVTR	9	Oxidation (M)	_AVM(Oxidation (M))GNPVTR_		AVM(1)GNPVTR		AVM(50)GNPVTR	0	0	1		ENSG00000136021|ENST00000360820|SCYL2;SCYL2|p.E217Dfs*25|1|0.09|ENSG00000136021|chr12:100312451-100312451|A/-|frameshift_variant	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7503356933594	2	480.750201	959.48585	0.0063801	3.0672E-06	0.22987	0.00011051	0.23625	0.00011358	480.7502409694819	19.39	0.87073	19.39	19.034	19.905	0					68	30	3	0	0	0	0.058995	1	2252	2252		49.554	23.286	1	298550			3320	3934	1708	1708	4216	4216		493			0.0044865687726769465
AVMGNPVTR	9	Oxidation (M)	_AVM(Oxidation (M))GNPVTR_		AVM(1)GNPVTR		AVM(50)GNPVTR	0	0	1		ENSG00000136021|ENST00000360820|SCYL2;SCYL2|p.E217Dfs*25|1|0.09|ENSG00000136021|chr12:100312451-100312451|A/-|frameshift_variant	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7502136230469	2	480.750201	959.48585	0.25358	0.00012191	-0.056808	-2.731E-05	0.19677	9.4598E-05	480.7501121345715	19.49	0.86342	19.435	19.114	19.978	-0.055693					69	30	3	0	0	0	0.090256	1	2235	2235		49.554	28.017	1	337510			3321	3934	1708	1708	4217	4217		493			0.0044865687726769465
AVMHFLVN	8	Unmodified	_AVMHFLVN_					0	0	0		nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L	nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-7|DNM1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.23663330078125	2	465.746931	929.479308	0.43879	0.00020437	1.4361	0.00066886	1.8749	0.00087323	465.7477504125112	20.711	0.5069	20.659	20.355	20.861	-0.052912					20	17	2	0	0	0	0.45015	1	2611	2611		5.7604	0.028577	1	40150			3322	1309	1709	1709	4218	4218					0.011747637165285596
AVMKLRSFKIE	11	Unmodified	_AVMKLRSFKIE_					0	0	0			REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF	REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.59478759765625	3	441.260202	1320.75878	0.78032	0.00034432	-0.99146	-0.00043749	-0.21114	-9.3167E-05	441.25976585141444	56.173	0.73524	56.173	55.82	56.555	0					52	26	3	0	0	0	0.44088	1	13515	13515		5.8681	5.8681	1	1287100	+		3323	20436	1710	1710	4219	4219					0.11122840547614032
AVMLEHEL	8	Unmodified	_AVMLEHEL_					0	0	0			REV__nc|ENSG00000187778|Q96EZ8-4|MCRS1	REV__nc|ENSG00000187778|Q96EZ8-4|MCRS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7718505859375	2	471.241678	940.468803	-0.051481	-2.426E-05	0.080975	3.8159E-05	0.029494	1.3899E-05	471.2416418382642	23.02	0.61366	22.933	22.685	23.298	-0.087608					32	21	2	0	0	0	0.34319	1	3406	3406		2.5775	0.27475	1	74501	+		3324	18520	1711	1711	4220	4220					-0.003812637285591336
AVMNFVVRY	9	Oxidation (M)	_AVM(Oxidation (M))NFVVRY_		AVM(1)NFVVRY		AVM(160)NFVVRY	0	0	1		ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.789306640625	2	557.789327	1113.5641	0.51108	0.00028508	-0.52291	-0.00029167	-0.011827	-6.5971E-06	557.7889859880445	48.283	0.84341	48.283	48.012	48.856	0					85	29	5	0	0	0	4.0037E-07	3	10999	10999;11048;11096		164.52	116.17	1	6952200			3325	2078	1712	1712	4221;4222;4223	4221		257			0.01186089462498785
AVMNFVVRY	9	Oxidation (M)	_AVM(Oxidation (M))NFVVRY_		AVM(1)NFVVRY		AVM(160)NFVVRY	0	0	1		ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7893676757812	2	557.789327	1113.5641	0.71182	0.00039704	-0.64481	-0.00035967	0.067011	3.7378E-05	557.7888779059892	48.288	1.0228	48.335	47.968	48.991	0.047523					94	37	4	0	0	0	4.0037E-07	3	11037	10988;11037;11087		164.52	107.04	1	7212700			3326	2078	1712	1712	4224;4225;4226	4225		257			0.01186089462498785
AVMNFVVRY	9	Oxidation (M)	_AVM(Oxidation (M))NFVVRY_		AVM(1)NFVVRY		AVM(160)NFVVRY	0	0	1		ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7894287109375	2	557.789327	1113.5641	0.48747	0.00027191	-0.29484	-0.00016446	0.19263	0.00010745	557.7890966523353	48.219	0.90308	48.262	47.987	48.89	0.04332					93	33	5	0	0	0	4.0037E-07	3	10970	10970;11016;11067		164.52	116.17	1	7326900			3327	2078	1712	1712	4227;4228;4229	4227		257			0.01186089462498785
AVMRFLTQR	9	Oxidation (M)	_AVM(Oxidation (M))RFLTQR_		AVM(1)RFLTQR		AVM(40)RFLTQR	0	0	1		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3;nc|ENSG00000131480|O75106-2|AOC2;ENSG00000131480|ENST00000253799|AOC2	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3134765625	2	569.3135	1136.61245	0.19225	0.00010945	-0.41295	-0.0002351	-0.2207	-0.00012565	569.3132116805923	27.258	1.0277	27.237	26.867	27.895	-0.021412					90	35	4	0	0	0	0.086462	1	4596	4596		40.239	12.61	1	1334500			3328	3569	1713	1713	4230	4230		452			0.049605831023882274
AVMRQVRQWE	10	Unmodified	_AVMRQVRQWE_					0	0	0		ENST00000392914.3_1_12:102517666-102545686:+|nuORF	ENST00000392914.3_1_12:102517666-102545686:+|nuORF	ENST00000392914.3_1_12:102517666-102545686:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7803649902344	3	434.896034	1301.66627	0.21783	9.4732E-05	1.5244	0.00066294	1.7422	0.00075767	434.89660593543204	34.08	0.46991	34.146	33.875	34.344	0.06636					36	16	3	0	0	0	0.31994	1	6665	6665		1.4551	0	1	165830			3329	10036	1714	1714	4231	4231					0.027507555341344414
AVMSATFAKF	10	Oxidation (M)	_AVM(Oxidation (M))SATFAKF_		AVM(1)SATFAKF		AVM(140)SATFAKF	0	0	1		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.776123046875	2	544.775885	1087.53722	0.59139	0.00032218	-0.41884	-0.00022817	0.17256	9.4005E-05	544.7755967626453	45.261	0.81103	45.261	44.935	45.746	0					77	29	4	0	0	0	2.7564E-05	2	10126	10076;10126		139.78	89.849	1	1605100			3330	12590	1715	1715	4232;4233	4233		966			-0.003050191486863696
AVMSATFAKF	10	Oxidation (M)	_AVM(Oxidation (M))SATFAKF_		AVM(1)SATFAKF		AVM(140)SATFAKF	0	0	1		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7763061523438	2	544.775885	1087.53722	0.71569	0.00038989	-0.36227	-0.00019736	0.35341	0.00019253	544.7756304851885	45.038	0.81112	45.106	44.817	45.628	0.068569					77	28	4	0	0	0	2.7564E-05	2	10009	10009;10060		139.78	101.81	1	1833200			3331	12590	1715	1715	4234;4235	4234		966			-0.003050191486863696
AVMSATFAKF	10	Oxidation (M)	_AVM(Oxidation (M))SATFAKF_		AVM(1)SATFAKF		AVM(140)SATFAKF	0	0	1		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7762451171875	2	544.775885	1087.53722	0.74075	0.00040354	-0.27479	-0.0001497	0.46596	0.00025385	544.7756814780508	45.037	0.90489	45.112	44.78	45.685	0.075047					83	33	4	0	0	0	2.7564E-05	2	9997	9997;10042		139.78	97.942	1	1722700			3332	12590	1715	1715	4236;4237	4236		966			-0.003050191486863696
AVMYIMYFL	9	Unmodified	_AVMYIMYFL_					0	0	0		ENST00000417121.2_1_3:50255369-50255834:+|nuORF;ENSG00000188338|ENST00000614032|SLC38A3	ENST00000417121.2_1_3:50255369-50255834:+|nuORF	ENST00000417121.2_1_3:50255369-50255834:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7877197265625	2	575.787407	1149.56026	0.38225	0.0002201	-0.49374	-0.00028429	-0.11149	-6.4192E-05	575.787056796908	29.737	0.86961	29.737	29.413	30.282	0					90	30	4	0	0	0	0.32415	1	5489	5489		5.2307	1.6342	1	1107300			3333	7743	1716	1716	4238	4238					-0.008537163555956795
AVNAHSNILK	10	Unmodified	_AVNAHSNILK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.8040161132812	2	533.803823	1065.59309	0.60437	0.00032262	-0.069393	-3.7042E-05	0.53498	0.00028557	533.8036920282105	20.747	0.85414	20.747	20.456	21.31	0					82	29	4	0	0	0	0.00067342	4	2600	2600;2645;2689;2744		125.18	69.678	1	866380			3334	3619	1717	1717	4239;4240;4241;4242	4239					0.06291950083118536
AVNAHSNILK	10	Unmodified	_AVNAHSNILK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.8040161132812	2	533.803823	1065.59309	0.63116	0.00033692	-0.13725	-7.3267E-05	0.49391	0.00026365	533.8036713818395	20.937	0.88109	20.827	20.553	21.434	-0.11003					81	30	4	0	0	0	3.4096E-05	3	2663	2663;2709;2751		135.72	71.758	1	1125200			3335	3619	1717	1717	4243;4244;4245	4243					0.06291950083118536
AVNAHSNILK	10	Unmodified	_AVNAHSNILK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.80419921875	2	533.803823	1065.59309	0.66807	0.00035662	-0.19458	-0.00010387	0.47349	0.00025275	533.8036444974254	20.819	0.95861	20.766	20.499	21.457	-0.05291					87	33	4	0	0	0	1.7995E-08	4	2669	2621;2669;2714;2769		158.08	94.116	1	964140			3336	3619	1717	1717	4246;4247;4248;4249	4247					0.06291950083118536
AVNFPFLVK	9	Unmodified	_AVNFPFLVK_					0	0	0		PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;nc|ENSG00000072062|P17612-2|PRKACA;ENSG00000072062|ENST00000308677|PRKACA	PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3213500976562	2	517.805303	1033.59605	0.27144	0.00014055	0.25994	0.0001346	0.53138	0.00027515	517.8051727926755	66.408	0.43578	66.394	66.167	66.603	-0.013596					29	15	3	0	0	0	0.23007	1	16584	16584		19.257	5.7491	1	151060			3337	968	1718	1718	4250	4250					0.08059825207942595
AVNFPFLVK	9	Unmodified	_AVNFPFLVK_					0	0	0		PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;nc|ENSG00000072062|P17612-2|PRKACA;ENSG00000072062|ENST00000308677|PRKACA	PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	517.805303	1033.59605	0.41919	0.00021706	-0.049883	-2.583E-05	0.36931	0.00019123	517.8052076316386	66.285	0.38007	66.369	66.192	66.572	0.083832	-0.021046	-0.00014459	NaN	19.257	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252500			3338	968	1718	1718							0.08059825207942595
AVNIGHKQ	8	Unmodified	_AVNIGHKQ_					0	0	0			REV__nc|ENSG00000100206|Q14565-2|DMC1	REV__nc|ENSG00000100206|Q14565-2|DMC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.2499084472656	2	433.745776	865.477	-0.044093	-1.9125E-05	0.028416	1.2325E-05	-0.015677	-6.7999E-06	433.7457021889224	24.127	0.62256	24.055	23.791	24.414	-0.072559					44	20	3	0	0	0	0.34319	1	3590	3590		5.7604	1.0044	1	153600	+		3339	14168	1719	1719	4251	4251					0.0388805130307901
AVNKEALDV	9	Unmodified	_AVNKEALDV_					0	0	0			REV__ENST00000475899.1_1_3:193355061-193361921:+|nuORF	REV__ENST00000475899.1_1_3:193355061-193361921:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7502136230469	2	479.763832	957.513111	0.027617	1.325E-05	-0.03599	-1.7267E-05	-0.0083728	-4.017E-06	479.76386162953827	18.942	1.4613	18.884	18.57	20.031	-0.058172					158	51	5	0	0	0	0.30623	1	2281	2281		7.9102	0	1	3662300	+		3340	18871	1720	1720	4252	4252					0.03265463689274384
AVNLDVKSL	9	Unmodified	_AVNLDVKSL_					0	0	0		ENST00000572638.1_1_17:44625595-44632942:+|nuORF;ENSG00000176809|ENST00000584306|LRRC37A3;ENSG00000238083|ENST00000576629|LRRC37A2;ENSG00000176681|ENST00000320254|LRRC37A	ENST00000572638.1_1_17:44625595-44632942:+|nuORF	ENST00000572638.1_1_17:44625595-44632942:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2427673339844	2	479.782025	957.549496	0.16733	8.0282E-05	-0.039207	-1.8811E-05	0.12812	6.1471E-05	479.7819015710071	32.93	0.28991	32.93	32.749	33.039	0					12	9	2	0	0	0	0.25202	1	6348	6348		10.824	0.024421	1	66402			3341	6940	1721	1721	4253	4253					0.06902340586009359
AVNLFFAWIKI	11	Unmodified	_AVNLFFAWIKI_					0	0	0		nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1;nc|ENSG00000107593|Q9P0L9-4|PKD2L1;nc|ENSG00000107593|Q9P0L9-3|PKD2L1	nc|ENSG00000107593|Q9P0L9-2|PKD2L1	nc|ENSG00000107593|Q9P0L9-2|PKD2L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2606506347656	3	441.26042	1320.75943	0.79229	0.0003496	-0.97377	-0.00042969	-0.18148	-8.0081E-05	441.2599196725915	56.314	0.70464	56.294	55.942	56.646	-0.019081					59	25	3	0	0	0	0.44713	1	13558	13558		5.0475	0.3316	1	1223500			3342	2135	1722	1722	4254	4254					0.11188003258962453
AVNLTTSVK	9	Unmodified	_AVNLTTSVK_					0	0	0			REV__nc|ENSG00000128641|O43795-2|MYO1B	REV__nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7526550292969	2	466.7742	931.533846	-0.31011	-0.00014475	-1.4164	-0.00066112	-1.7265	-0.00080587	466.773163062581	14.018	0.1527	14.018	13.902	14.055	0					8	4	2	0	0	0	0.24471	1	578	578		17.113	5.6182	1	59526	+		3343	15381	1723	1723	4255	4255					0.06534054068947626
AVNMVPFPR	9	Oxidation (M)	_AVNM(Oxidation (M))VPFPR_		AVNM(1)VPFPR		AVNM(120)VPFPR	0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENSG00000173213|ENST00000308911|TUBB8B;CON__ENSEMBL:ENSBTAP00000025008;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.776611328125	2	523.776219	1045.53789	0.34177	0.00017901	0.46414	0.0002431	0.80591	0.00042212	523.7764282083825	41.512	0.60344	41.602	41.055	41.658	0.090252					37	22	2	0	0	0	0.00094673	1	8927	8927		123.45	71.821	1	1487400			3344	7841;8646;1670;8660	1724	1724	4256	4256		205			0.016938202910068867
AVNMVPFPR	9	Oxidation (M)	_AVNM(Oxidation (M))VPFPR_		AVNM(1)VPFPR		AVNM(120)VPFPR	0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENSG00000173213|ENST00000308911|TUBB8B;CON__ENSEMBL:ENSBTAP00000025008;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.7764892578125	2	523.776219	1045.53789	0.46093	0.00024142	0.19094	0.00010001	0.65187	0.00034143	523.7762617519599	41.351	0.59734	41.448	40.96	41.557	0.096622					39	21	2	0	0	0	0.0013036	1	8890	8890		118.89	67.265	1	1202400			3345	7841;8646;1670;8660	1724	1724	4257	4257		205			0.016938202910068867
AVNMVPFPR	9	Oxidation (M)	_AVNM(Oxidation (M))VPFPR_					0	0	1		ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENSG00000173213|ENST00000308911|TUBB8B;CON__ENSEMBL:ENSBTAP00000025008;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000261456|ENST00000568584|TUBB8	ENSG00000196230|ENST00000327892|TUBB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	523.776219	1045.53789	0.37623	0.00019706	0.57952	0.00030354	0.95576	0.0005006	523.7763737395451	41.557	0.62182	41.557	41.069	41.69	0	0.021184	0.00027162	NaN	123.45	36	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1238900			3346	7841;8646;1670;8660	1724	1724				205			0.016938202910068867
AVNPKFLAV	9	Unmodified	_AVNPKFLAV_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B;ENST00000453768.6_1_11:67208484-67210099:-|nuORF	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7727966308594	2	479.789653	957.564752	0.23995	0.00011513	-0.49723	-0.00023856	-0.25728	-0.00012344	479.78916893645453	49.679	0.43163	49.679	49.462	49.894	0					36	15	3	0	0	0	0.25314	1	11413	11413		15.847	2.3393	1	578850			3347	6657	1725	1725	4258	4258					0.0842725217385123
AVNPKFLAV	9	Unmodified	_AVNPKFLAV_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B;ENST00000453768.6_1_11:67208484-67210099:-|nuORF	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7723083496094	2	479.789653	957.564752	0.20262	9.7217E-05	-0.662	-0.00031762	-0.45938	-0.00022041	479.78927446126477	49.675	0.50404	49.696	49.372	49.876	0.020695					38	18	3	0	0	0	0.17787	1	11438	11438		26.884	12.045	1	555530			3348	6657	1725	1725	4259	4259					0.0842725217385123
AVNPKFLAV	9	Unmodified	_AVNPKFLAV_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B;ENST00000453768.6_1_11:67208484-67210099:-|nuORF	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	479.789653	957.564752	0.23995	0.00011513	-0.49723	-0.00023856	-0.25728	-0.00012344	479.78916893645453	49.679	0.43163	49.679	49.462	49.894	0	-0.0090931	0.00013954	NaN	26.884	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	578850			3349	6657	1725	1725							0.0842725217385123
AVNPKFLAV	9	Unmodified	_AVNPKFLAV_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B;ENST00000453768.6_1_11:67208484-67210099:-|nuORF	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.789653	957.564752	0.21905	0.0001051	-0.73749	-0.00035384	-0.51844	-0.00024874	479.7892683103411	49.645	0.47944	49.69	49.425	49.905	0.044891	0.0014807	-9.1009E-05	NaN	26.884	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	522790			3350	6657	1725	1725							0.0842725217385123
AVNPYFDIPK	10	Unmodified	_AVNPYFDIPK_					0	0	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3095703125	2	582.308406	1162.60226	0.64386	0.00037492	1.9078	0.0011109	2.5517	0.0014859	582.310175586453	54.887	1.5008	54.887	54.462	55.963	0					100	54	4	0	0	0	0.067194	1	13084	13084		55.249	34.834	1	1338700			3351	7883	1726	1726	4260	4260					0.027462986487989838
AVNPYFDIPK	10	Unmodified	_AVNPYFDIPK_					0	0	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3096923828125	2	582.308406	1162.60226	0.5862	0.00034135	0.8217	0.00047848	1.4079	0.00081983	582.3092850591013	54.815	0.6407	54.878	54.54	55.181	0.063202					57	23	4	0	0	0	0.049822	1	13063	13063		59.052	32.784	1	1470900			3352	7883	1726	1726	4261	4261					0.027462986487989838
AVPAPLPKK	9	Unmodified	_AVPAPLPKK_					0	0	0		ENSG00000180353|ENST00000314583|HCLS1	ENSG00000180353|ENST00000314583|HCLS1	ENSG00000180353|ENST00000314583|HCLS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.2573547363281	2	460.80002	919.585488	-0.16094	-7.4163E-05	0.55414	0.00025535	0.3932	0.00018118	460.8002329263833	22.627	0.57462	22.627	22.446	23.021	0					39	19	3	0	0	0	0.25938	1	3223	3223		4.3292	0	1	114720			3353	7183	1727	1727	4262	4262					0.12247842553506416
AVPAPLPKK	9	Unmodified	_AVPAPLPKK_					0	0	0		ENSG00000180353|ENST00000314583|HCLS1	ENSG00000180353|ENST00000314583|HCLS1	ENSG00000180353|ENST00000314583|HCLS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.25738525390625	2	460.80002	919.585488	0.019557	9.012E-06	0.437	0.00020137	0.45656	0.00021038	460.8002092674794	22.724	0.56536	22.679	22.438	23.004	-0.044867					37	19	3	0	0	0	0.25526	1	3228	3228		7.9102	0	1	110620			3354	7183	1727	1727	4263	4263					0.12247842553506416
AVPKIEYYR	9	Unmodified	_AVPKIEYYR_					0	0	0		nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.2445068359375	2	569.816399	1137.61824	-0.079594	-4.5354E-05	-2.6951	-0.0015357	-2.7747	-0.0015811	569.8147149366604	13.747	0.21701	13.747	13.63	13.847	0					17	7	3	0	0	0	0.25988	1	530	530		3.9444	0.66309	1	43052			3355	1029	1728	1728	4264	4264					0.05494004885713366
AVPLKLGL	8	Unmodified	_AVPLKLGL_					0	0	0			REV__ENST00000537473.2_1_12:57081448-57081670:-|nuORF	REV__ENST00000537473.2_1_12:57081448-57081670:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.8978576660156	2	405.776014	809.537475	0.17519	7.1086E-05	-0.72432	-0.00029391	-0.54914	-0.00022283	405.775557781277	48.068	0.57185	48.068	47.908	48.48	0					29	19	2	0	0	0	0.34147	1	11089	11089		2.8892	0	1	606730	+		3356	22094	1729	1729	4265	4265					0.12508768633449563
AVPLKLGL	8	Unmodified	_AVPLKLGL_					0	0	0			REV__ENST00000537473.2_1_12:57081448-57081670:-|nuORF	REV__ENST00000537473.2_1_12:57081448-57081670:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.8978576660156	2	405.776014	809.537475	0.16403	6.6559E-05	-0.99442	-0.00040351	-0.83039	-0.00033695	405.77544075657755	47.94	0.81876	47.983	47.824	48.643	0.04332					43	30	2	0	0	0	0.34147	1	11062	11062		6.3541	0	1	713580	+		3357	22094	1729	1729	4266	4266					0.12508768633449563
AVPPLHAGL	9	Unmodified	_AVPPLHAGL_					0	0	0		ENSG00000128242|ENST00000406361|GAL3ST1;GAL3ST1|p.S51Pfs*12|1|0.42|ENSG00000128242|chr22:30556075-30556075|C/-|frameshift_variant	ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.7609558105469	2	437.760895	873.507237	-0.28137	-0.00012317	0.13159	5.7603E-05	-0.14978	-6.5569E-05	437.76090026461986	61.338	0.78146	61.435	61.248	62.03	0.096985					54	28	3	0	0	0	0.044139	1	15064	15064		56.048	10.298	1	620370			3358	3352	1730	1730	4267	4267					0.06542409968267293
AVPRASPTL	9	Unmodified	_AVPRASPTL_					0	0	0			REV__ENST00000481187.5_1_9:139887192-139887402:+|nuORF	REV__ENST00000481187.5_1_9:139887192-139887402:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2688293457031	2	456.269084	910.523616	0.17088	7.7965E-05	-0.13261	-6.0504E-05	0.038269	1.7461E-05	456.2688911872657	37.435	0.70096	37.528	37.302	38.002	0.093014					44	25	2	0	0	0	0.0083926	1	7715	7715		81.89	6.1294	1	671340	+		3359	21486	1731	1731	4268	4268					0.06477491134376123
AVPRASPTL	9	Unmodified	_AVPRASPTL_					0	0	0			REV__ENST00000481187.5_1_9:139887192-139887402:+|nuORF	REV__ENST00000481187.5_1_9:139887192-139887402:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	456.269084	910.523616	0.21685	9.8941E-05	-0.2511	-0.00011457	-0.034255	-1.563E-05	456.26885068590343	37.563	0.71	37.651	37.358	38.068	0.08741	0.038489	7.7938E-05	NaN	81.89	48	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	944510	+		3360	21486	1731	1731							0.06477491134376123
AVPRASPTL	9	Unmodified	_AVPRASPTL_					0	0	0			REV__ENST00000481187.5_1_9:139887192-139887402:+|nuORF	REV__ENST00000481187.5_1_9:139887192-139887402:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	456.269084	910.523616	0.17088	7.7965E-05	-0.13261	-6.0504E-05	0.038269	1.7461E-05	456.2688911872657	37.435	0.70096	37.528	37.302	38.002	0.093014	-0.084299	0.00018607	NaN	81.89	44	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	671340	+		3361	21486	1731	1731							0.06477491134376123
AVPRFVQQK	9	Unmodified	_AVPRFVQQK_					0	0	0		nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;ENST00000482171.5_1_2:130914007-130915206:-|nuORF;ENST00000473720.5_1_2:130913606-130922014:-|nuORF	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.7863159179688	2	536.816733	1071.61891	0.39613	0.00021265	0.23932	0.00012847	0.63545	0.00034112	536.816742356484	25.303	0.52699	25.303	25.035	25.562	0					29	17	2	0	0	0	0.25706	1	4007	4007		6.7232	2.7788	1	119050			3362	12719	1732	1732	4269	4269					0.08596844325415987
AVPRFVQQK	9	Unmodified	_AVPRFVQQK_					0	0	0		nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;ENST00000482171.5_1_2:130914007-130915206:-|nuORF;ENST00000473720.5_1_2:130913606-130922014:-|nuORF	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.7860717773438	2	536.816733	1071.61891	0.14894	7.9955E-05	0.391	0.0002099	0.53994	0.00028985	536.8168039109019	25.338	0.42929	25.282	25.023	25.453	-0.055931					29	14	3	0	0	0	0.2451	1	4038	4038		15.847	4.2069	1	102340			3363	12719	1732	1732	4270	4270					0.08596844325415987
AVPRFVQQK	9	Unmodified	_AVPRFVQQK_					0	0	0		nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;ENST00000482171.5_1_2:130914007-130915206:-|nuORF;ENST00000473720.5_1_2:130913606-130922014:-|nuORF	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7861328125	2	536.816733	1071.61891	0.087007	4.6707E-05	0.54788	0.00029411	0.63488	0.00034082	536.8169037034874	25.364	0.55223	25.332	25.047	25.599	-0.03141					43	19	3	0	0	0	0.25202	1	4031	4031		10.824	2.0785	1	102210			3364	12719	1732	1732	4271	4271					0.08596844325415987
AVPRPIPEK	9	Unmodified	_AVPRPIPEK_					0	0	0		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.76568603515625	2	503.805834	1005.59712	0.096751	4.8744E-05	0.36612	0.00018446	0.46287	0.0002332	503.80607062608664	23.123	0.2936	23.123	22.904	23.197	0					15	9	2	0	0	0	0.25123	1	3335	3335		12.241	2.1667	1	39523			3365	1078	1733	1733	4272	4272					0.09454039576849027
AVPTNIIAAK	10	Unmodified	_AVPTNIIAAK_					0	0	0		ENST00000521335.1_1_8:54745492-54754250:-|nuORF;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H	ENST00000521335.1_1_8:54745492-54754250:-|nuORF	ENST00000521335.1_1_8:54745492-54754250:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3057556152344	2	499.305667	996.596781	0.24141	0.00012054	-0.0082475	-4.118E-06	0.23316	0.00011642	499.3056068760681	38.966	0.6872	39.059	38.81	39.497	0.09267					44	24	2	0	0	0	0.31681	1	8159	8159		18.373	1.2602	1	902470			3366	627	1734	1734	4273	4273					0.09834619856985682
AVPTPLSW	8	Unmodified	_AVPTPLSW_					0	0	0		nc|ENSG00000224383|P0C7W0-4|PRR29	nc|ENSG00000224383|P0C7W0-4|PRR29	nc|ENSG00000224383|P0C7W0-4|PRR29	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.5482482910156	2	435.739628	869.464704	0.0033883	1.4764E-06	0.77394	0.00033724	0.77733	0.00033871	435.7404707986958	21.434	0.11868	21.385	21.316	21.435	-0.049377					5	3	2	0	0	0	0.34185	1	2824	2824		10.183	4.9527	1	16006			3367	12951	1735	1735	4274	4274					0.02475014840035783
AVPVIQRHEH	10	Unmodified	_AVPVIQRHEH_					0	0	0		ENST00000274150.4_1_5:1037707-1038485:+|nuORF;ENSG00000145506|ENST00000296849|NKD2	ENST00000274150.4_1_5:1037707-1038485:+|nuORF	ENST00000274150.4_1_5:1037707-1038485:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.8029174804688	2	593.327996	1184.64144	0.43891	0.00026042	-0.56607	-0.00033586	-0.12716	-7.5445E-05	593.3276238720806	91.76	0.52897	91.851	91.529	92.058	0.090675					49	34	2	0	0	0	0.3198	1	24399	24399		4.3292	1.0479	1	219070			3368	4656	1736	1736	4275	4275					0.05650443723038734
AVPWPPEPTFL	11	Unmodified	_AVPWPPEPTFL_					0	0	0			REV__ENST00000344293.5_1_10:8056784-8056973:+|nuORF	REV__ENST00000344293.5_1_10:8056784-8056973:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.57830810546875	3	418.557013	1252.64921	-0.2476	-0.00010364	0.5595	0.00023418	0.3119	0.00013055	418.55750438589155	23.259	0.1634	23.259	23.173	23.336	0					9	5	2	0	0	0	0.3322	1	3408	3408		4.7159	0.83959	1	24577	+		3369	20139	1737	1737	4276	4276					0.03299158199934027
AVQDRRVFLK	10	Unmodified	_AVQDRRVFLK_					0	0	0		ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2467041015625	3	411.247173	1230.71969	-0.073779	-3.0341E-05	-0.6914	-0.00028434	-0.76518	-0.00031468	411.24687270330344	24.866	0.60743	24.866	24.575	25.182	0					51	20	3	0	0	0	0.32099	1	3869	3869		17.863	7.5479	1	273820			3370	9771	1738	1738	4277	4277					0.11355876308266488
AVQDRRVFLK	10	Unmodified	_AVQDRRVFLK_					0	0	0		ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2467041015625	3	411.247173	1230.71969	0.051728	2.1273E-05	-0.79163	-0.00032556	-0.73991	-0.00030428	411.2467539257862	24.964	0.67941	24.908	24.661	25.341	-0.055931					60	23	4	0	0	0	0.32099	1	3894	3894		17.863	7.5479	1	252940			3371	9771	1738	1738	4278	4278					0.11355876308266488
AVQDRRVFLK	10	Unmodified	_AVQDRRVFLK_					0	0	0		ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2467956542969	3	411.247173	1230.71969	-0.18765	-7.717E-05	-0.68568	-0.00028198	-0.87333	-0.00035916	411.2468987274713	24.882	0.69378	24.851	24.571	25.265	-0.031408					58	23	3	0	0	0	0.28078	1	3879	3879		22.775	12.46	1	377600			3372	9771	1738	1738	4279	4279					0.11355876308266488
AVQEFGLAR	9	Unmodified	_AVQEFGLAR_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;PRELID1|p.F151L|1|0.13|ENSG00000169230|chr5:177306118-177306118|C/G|missense_variant	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.772216796875	2	495.771991	989.529429	0.030329	1.5036E-05	0.051907	2.5734E-05	0.082236	4.077E-05	495.7721070668486	39.034	1.2026	39.034	38.765	39.968	0					151	43	5	0	0	0	2.0102E-16	4	8187	8135;8143;8187;8233		203.64	80.188	1	19674000			3373	6338	1739	1739	4280;4281;4282;4283	4282					0.03424589646044751
AVQEFGLAR	9	Unmodified	_AVQEFGLAR_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;PRELID1|p.F151L|1|0.13|ENSG00000169230|chr5:177306118-177306118|C/G|missense_variant	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.77227783203125	2	495.771991	989.529429	0.29877	0.00014812	-0.072086	-3.5738E-05	0.22669	0.00011239	495.7719734229873	38.914	1.5417	39.007	38.401	39.943	0.09267					146	55	5	0	0	0	2.0102E-16	5	8162	8108;8112;8162;8215;8264		203.64	92.352	1	21509000			3374	6338	1739	1739	4284;4285;4286;4287;4288	4286					0.03424589646044751
AVQEFGLAR	9	Unmodified	_AVQEFGLAR_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;PRELID1|p.F151L|1|0.13|ENSG00000169230|chr5:177306118-177306118|C/G|missense_variant	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7720947265625	2	495.771991	989.529429	0.51854	0.00025708	-0.12859	-6.375E-05	0.38996	0.00019333	495.7721248233708	38.919	1.5398	39.019	38.409	39.949	0.099403					144	55	5	0	0	0	2.0102E-16	5	8149	8100;8105;8149;8191;8243		203.64	80.188	1	21503000			3375	6338	1739	1739	4289;4290;4291;4292;4293	4291					0.03424589646044751
AVQEFGLARFK	11	Unmodified	_AVQEFGLARFK_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.57220458984375	3	422.571545	1264.69281	0.08356	3.531E-05	-0.0088716	-3.7489E-06	0.074688	3.1561E-05	422.5719845575281	46.007	1.5779	46.007	45.666	47.244	0					174	56	5	0	0	0	0.006514	4	10326	10276;10326;10366;10411		64.86	45.235	1	50217000			3376	6338	1740	1740	4294;4295;4296;4297	4295					0.07104767697069292
AVQEFGLARFK	11	Unmodified	_AVQEFGLARFK_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3538818359375	2	633.35368	1264.69281	0.47129	0.0002985	-0.12534	-7.9387E-05	0.34595	0.00021911	633.3536023737121	45.99	1.0387	45.99	45.694	46.732	0					119	37	5	0	0	0	8.1577E-13	3	10334	10286;10334;10389		168.9	126.59	1	12174000			3377	6338	1740	1740	4298;4299;4300	4299					0.07104767697069292
AVQEFGLARFK	11	Unmodified	_AVQEFGLARFK_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.57220458984375	3	422.571545	1264.69281	-0.074332	-3.1411E-05	0.15763	6.6609E-05	0.083295	3.5198E-05	422.572069448764	45.728	1.5181	45.788	45.418	46.936	0.059834					177	54	6	0	0	0	0.0035703	4	10230	10182;10230;10282;10328		70.345	52.481	1	49422000			3378	6338	1740	1740	4301;4302;4303;4304	4302					0.07104767697069292
AVQEFGLARFK	11	Unmodified	_AVQEFGLARFK_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3539428710938	2	633.35368	1264.69281	0.34626	0.00021931	0.066747	4.2275E-05	0.41301	0.00026158	633.353711473928	45.701	0.97644	45.76	45.448	46.424	0.059837					107	34	5	0	0	0	5.9617E-18	4	10238	10195;10238;10287;10340		180.74	144.23	1	12121000			3379	6338	1740	1740	4305;4306;4307;4308	4306					0.07104767697069292
AVQEFGLARFK	11	Unmodified	_AVQEFGLARFK_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5721740722656	3	422.571545	1264.69281	0.20552	8.6847E-05	-0.10437	-4.4105E-05	0.10115	4.2742E-05	422.5719589897994	45.734	1.6429	45.799	45.461	47.104	0.065048					201	58	6	0	0	0	0.00539	4	10264	10175;10219;10264;10318		66.84	48.977	1	50961000			3380	6338	1740	1740	4309;4310;4311;4312	4311					0.07104767697069292
AVQEFGLARFK	11	Unmodified	_AVQEFGLARFK_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3538818359375	2	633.35368	1264.69281	0.66577	0.00042167	-0.24992	-0.00015829	0.41585	0.00026338	633.3535357015273	45.738	1.0678	45.803	45.487	46.555	0.065048					117	38	5	0	0	0	2.7277E-18	4	10280	10185;10237;10280;10331		193.01	152.28	1	11117000			3381	6338	1740	1740	4313;4314;4315;4316	4315					0.07104767697069292
AVQFILNPK	9	Unmodified	_AVQFILNPK_					0	0	0			REV__ENSG00000115474|ENST00000233826|KCNJ13	REV__ENSG00000115474|ENST00000233826|KCNJ13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.8368530273438	2	515.30821	1028.60187	0.24598	0.00012676	1.2866	0.00066299	1.5326	0.00078975	515.8106172662193	49.692	0.87331	49.737	49.21	50.084	0.044891					75	32	3	0	0	0	0.25066	1	11398	11398		3.9444	0	1	899790	+		3382	14880	1741	1741	4317	4317					0.08870923719609891
AVQGISGLPLK	11	Unmodified	_AVQGISGLPLK_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.83203125	2	541.832049	1081.64954	0.5062	0.00027428	-0.23333	-0.00012643	0.27287	0.00014785	541.8318131115204	49.759	1.0544	49.759	49.434	50.489	0					96	38	4	0	0	0	1.3918E-12	3	11503	11454;11503;11558		160.97	84.144	1	4955700			3383	6206	1742	1742	4318;4319;4320	4319					0.1119857791979939
AVQGISGLPLK	11	Unmodified	_AVQGISGLPLK_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.8320922851562	2	541.832049	1081.64954	0.54943	0.0002977	-0.33502	-0.00018152	0.21441	0.00011618	541.8317819022607	49.755	0.972	49.8	49.489	50.461	0.044891					99	36	4	0	0	0	1.3918E-12	3	11491	11449;11491;11543		160.97	80.293	1	5242700			3384	6206	1742	1742	4321;4322;4323	4322					0.1119857791979939
AVQGISGLPLK	11	Unmodified	_AVQGISGLPLK_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.83203125	2	541.832049	1081.64954	0.57825	0.00031332	-0.38003	-0.00020591	0.19822	0.0001074	541.8317614496424	49.738	1.0654	49.758	49.429	50.495	0.020695					112	39	4	0	0	0	1.3918E-12	3	11490	11444;11490;11545		160.97	80.293	1	5623000			3385	6206	1742	1742	4324;4325;4326	4325					0.1119857791979939
AVQGYFVLA	9	Unmodified	_AVQGYFVLA_					0	0	0		ENSG00000090857|ENST00000288050|PDPR	ENSG00000090857|ENST00000288050|PDPR	ENSG00000090857|ENST00000288050|PDPR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.80853271484375	2	484.26601	966.517468	0.44233	0.00021421	-0.032508	-1.5742E-05	0.40982	0.00019846	484.26594035328776	47.568	0.398	47.616	47.374	47.772	0.047523					30	14	3	0	0	0	0.24739	1	10751	10751		8.5933	6.0158	1	306990			3386	1388	1743	1743	4327	4327					0.03286972902844809
AVQHFSLLY	9	Unmodified	_AVQHFSLLY_					0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2901000976562	2	539.290017	1076.56548	0.53239	0.00028712	-1.2479	-0.00067299	-0.71552	-0.00038587	539.2897723857943	57.546	1.2252	57.546	56.962	58.187	0					108	44	4	0	0	0	0.037019	2	13900	13900;13946		57.722	23.62	1	4904800			3387	3246	1744	1744	4328;4329	4328					0.030260468229243997
AVQHFSLLY	9	Unmodified	_AVQHFSLLY_					0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2902221679688	2	539.290017	1076.56548	0.46617	0.0002514	-1.0852	-0.00058526	-0.61907	-0.00033386	539.2899002233617	57.384	1.2609	57.47	57.075	58.336	0.085621					110	45	5	0	0	0	0.018449	2	13837	13837;13887		66.457	28.281	1	6302800			3388	3246	1744	1744	4330;4331	4330					0.030260468229243997
AVQHFSLLY	9	Unmodified	_AVQHFSLLY_					0	0	0		nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.2899780273438	2	539.290017	1076.56548	0.41307	0.00022277	-0.36073	-0.00019454	0.052347	2.823E-05	539.289971114613	57.692	1.0197	57.675	57.364	58.383	-0.0172					58	37	2	0	0	0	0.037019	3	13960	13916;13960;13976		57.722	26.454	1	5466200			3389	3246	1744	1744	4332;4333;4334	4333					0.030260468229243997
AVQHGGLK	8	Unmodified	_AVQHGGLK_					0	0	0			REV__ENSG00000122483|ENST00000690025|CCDC18	REV__ENSG00000122483|ENST00000690025|CCDC18	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2239685058594	2	405.235045	808.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.643	1	17.583	17.083	18.083	-0.060429								0	0	0	0.36961	1	1691	1691		5.7604	2.8712	1		+		3390	15159	1745	1745	4335	4335					0.04364666274375395
AVQKKTFTK	9	Unmodified	_AVQKKTFTK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.E1055Gfs*20|1|0.19|ENSG00000115306|chr2:54631208-54631224|GAGAGGCCTCCCTGGGA/-|frameshift_variant;SPTBN2|p.S1719Pfs*11|1|0.21|ENSG00000173898|chr11:66692572-66692572|G/-|frameshift_variant;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8187866210938	2	525.818941	1049.62333	0.1621	8.5237E-05	-0.21688	-0.00011404	-0.054781	-2.8805E-05	525.8186632881672	12.686	0.39735	12.686	12.555	12.952	0					40	13	4	0	0	0	0.0099976	1	202	202		79.427	50.345	1	411140			3391	2631	1746	1746	4336	4336					0.10050308748327552
AVQKKTFTK	9	Unmodified	_AVQKKTFTK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.E1055Gfs*20|1|0.19|ENSG00000115306|chr2:54631208-54631224|GAGAGGCCTCCCTGGGA/-|frameshift_variant;SPTBN2|p.S1719Pfs*11|1|0.21|ENSG00000173898|chr11:66692572-66692572|G/-|frameshift_variant;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.81884765625	2	525.818941	1049.62333	0.15974	8.3992E-05	-0.0093919	-4.9384E-06	0.15034	7.9053E-05	525.8187922641926	12.692	0.51943	12.592	12.46	12.98	-0.099291					41	17	4	0	0	0	0.0027197	1	206	206		104.48	75.403	1	348130			3392	2631	1746	1746	4337	4337					0.10050308748327552
AVQKKTFTK	9	Unmodified	_AVQKKTFTK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.E1055Gfs*20|1|0.19|ENSG00000115306|chr2:54631208-54631224|GAGAGGCCTCCCTGGGA/-|frameshift_variant;SPTBN2|p.S1719Pfs*11|1|0.21|ENSG00000173898|chr11:66692572-66692572|G/-|frameshift_variant;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8187866210938	2	525.818941	1049.62333	0.073677	3.8741E-05	-0.062391	-3.2806E-05	0.011285	5.9341E-06	525.8188035789465	12.727	0.38469	12.659	12.52	12.905	-0.067496					33	12	4	0	0	0	0.0027197	1	213	213		104.48	68.357	1	384190			3393	2631	1746	1746	4338	4338					0.10050308748327552
AVQLNSAENYF	11	Unmodified	_AVQLNSAENYF_					0	0	0			REV__ENST00000526770.5_1_11:67376014-67378079:+|nuORF	REV__ENST00000526770.5_1_11:67376014-67378079:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.20361328125	3	419.203299	1254.58807	0.6064	0.00025421	-0.1255	-5.261E-05	0.4809	0.0002016	419.2032741998733	56.085	1.3553	56.085	55.682	57.038	0					126	49	4	0	0	0	0.39802	1	13475	13475		6.2344	0	1	7872100	+		3394	17412	1747	1747	4339	4339					-0.029043985701491692
AVQLVSSGVV	10	Unmodified	_AVQLVSSGVV_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7842102050781	2	479.782025	957.549496	-0.037219	-1.7857E-05	0.16086	7.7177E-05	0.12364	5.932E-05	479.7819371705685	15.071	0.77341	15.007	14.618	15.391	-0.064413					72	26	4	0	0	0	0.39009	1	972	972		5.2969	1.7004	1	610390	+		3395	18625	1748	1748	4340	4340					0.06902340586009359
AVQNRLLVD	9	Unmodified	_AVQNRLLVD_					0	0	0			REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF	REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7777709960938	2	514.298373	1026.58219	0.34474	0.0001773	0.12332	6.3424E-05	0.46807	0.00024073	514.2983076232633	86.14	0.88934	86.224	85.836	86.725	0.084251					90	34	3	0	0	0	0.24913	1	22587	22587		7.9102	0.62092	1	1647900	+		3396	15496	1749	1749	4341	4341					0.0699654770885445
AVQQPFINK	9	Unmodified	_AVQQPFINK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7958374023438	2	522.795466	1043.57638	0.32432	0.00016955	0.14504	7.5826E-05	0.46936	0.00024538	522.7955131128809	33.163	0.5316	33.163	32.895	33.426	0					40	18	3	0	0	0	0.012082	1	6391	6391		85.272	26.593	1	433330			3397	7605	1750	1750	4342	4342					0.056334491971938405
AVQQPFINK	9	Unmodified	_AVQQPFINK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7960205078125	2	522.795466	1043.57638	0.33811	0.00017676	0.084163	4.4E-05	0.42227	0.00022076	522.795494272104	33.055	0.55685	33.11	32.864	33.421	0.055309					41	19	3	0	0	0	0.040595	1	6350	6350		74.929	24.996	1	350570			3398	7605	1750	1750	4343	4343					0.056334491971938405
AVQQPFINK	9	Unmodified	_AVQQPFINK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7955932617188	2	522.795466	1043.57638	0.3604	0.00018842	-0.079828	-4.1734E-05	0.28057	0.00014668	522.795371208285	33.042	0.55185	33.096	32.877	33.429	0.054371					31	19	2	0	0	0	0.023967	1	6364	6364		62.573	20.733	1	449330			3399	7605	1750	1750	4344	4344					0.056334491971938405
AVQRLEEQ	8	Unmodified	_AVQRLEEQ_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7773132324219	2	486.759081	971.503609	0.39116	0.0001904	0.093294	4.5412E-05	0.48446	0.00023581	486.7591750436697	19.782	0.63862	19.726	19.395	20.034	-0.055693					38	22	2	0	0	0	0.34247	1	2313	2313		8.5933	0	1	45211			3400	8155	1751	1751	4345	4345					0.016716954037633514
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3220825195312	2	529.321848	1056.62914	0.36383	0.00019258	-0.1259	-6.6643E-05	0.23793	0.00012594	529.3221797173316	22.293	1.6261	22.293	22.017	23.643	0					166	56	5	0	0	0	2.1937E-08	5	3087	3087;3137;3179;3224;3278		179.28	53.754	1	11684000			3401	294	1752	1752	4346;4347;4348;4349;4350	4346					0.10309407260001535
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3226318359375	2	529.321848	1056.62914	0.28528	0.000151	-0.019041	-1.0079E-05	0.26624	0.00014093	529.3222516335496	22.421	2.1854	22.333	22.006	24.192	-0.088146					207	77	5	0	0	0	3.4262E-07	4	3155	3104;3155;3203;3247		166.77	64.618	1	10841000			3402	294	1752	1752	4351;4352;4353;4354	4352					0.10309407260001535
AVQRTLLEK	9	Unmodified	_AVQRTLLEK_					0	0	0		ENST00000381177.6_1_X:2656215-2658842:+|nuORF;nc|ENSG00000292348|P14209-3|CD99;ENSG00000002586|ENST00000381192|CD99	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	ENST00000381177.6_1_X:2656215-2658842:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.32275390625	2	529.321848	1056.62914	0.28143	0.00014897	0.0027689	1.4656E-06	0.2842	0.00015043	529.3222944421838	22.404	1.6657	22.359	22.009	23.675	-0.044867					185	58	5	0	0	0	2.1937E-08	5	3145	3101;3145;3188;3235;3278		179.28	65.082	1	11374000			3403	294	1752	1752	4355;4356;4357;4358;4359	4356					0.10309407260001535
AVREAPAEL	9	Unmodified	_AVREAPAEL_					0	0	0		nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000157833|Q75VX8-2|GAREM2;ENSG00000157833|ENST00000401533|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2641296386719	2	478.263999	954.513445	0.20654	9.8778E-05	0.069889	3.3425E-05	0.27642	0.0001322	478.26402005465366	31.256	0.81341	31.297	30.988	31.802	0.040991					72	29	4	0	0	0	0.13748	1	5869	5869		32.786	2.9451	1	2060000			3404	5328	1753	1753	4360	4360					0.03436883409131042
AVREEVEVLK	10	Unmodified	_AVREEVEVLK_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1;nc|ENSG00000102804|Q15714-5|TSC22D1;ENST00000496314.1_1_13:45008764-45009186:-|nuORF;nc|ENSG00000166925|Q9Y3Q8-2|TSC22D4;ENSG00000166925|ENST00000300181|TSC22D4;ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2;nc|ENSG00000102804|Q15714-2|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1;nc|ENSG00000102804|Q15714-2|TSC22D1	nc|ENSG00000102804|Q15714-2|TSC22D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3378295898438	2	586.337695	1170.66084	0.16113	9.4474E-05	0.69289	0.00040627	0.85402	0.00050074	586.3376473674462	31.252	0.49376	31.252	31.033	31.526	0					23	17	2	0	0	0	0.35267	1	5795	5795		12.175	2.6308	1	137720			3405	1785;12629	1754	1754	4361	4361					0.08233355223273975
AVRKQRAF	8	Unmodified	_AVRKQRAF_					0	0	0		ENST00000427412.5_1_X:71525187-71525325:-|nuORF	ENST00000427412.5_1_X:71525187-71525325:-|nuORF	ENST00000427412.5_1_X:71525187-71525325:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2956237792969	2	488.295968	974.577383	0.17345	8.4697E-05	-0.47248	-0.00023071	-0.29903	-0.00014601	488.2957251971658	25.463	0.56166	25.463	25.153	25.714	0					41	18	3	0	0	0	0.45015	1	4091	4091		5.7604	0	1	149370			3406	10432	1755	1755	4362	4362					0.08907708356753119
AVRKQRAF	8	Unmodified	_AVRKQRAF_					0	0	0		ENST00000427412.5_1_X:71525187-71525325:-|nuORF	ENST00000427412.5_1_X:71525187-71525325:-|nuORF	ENST00000427412.5_1_X:71525187-71525325:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	488.295968	974.577383	0.17345	8.4697E-05	-0.47248	-0.00023071	-0.29903	-0.00014601	488.2957251971658	25.463	0.56166	25.463	25.153	25.714	0	0.017943	-0.00021997	NaN	5.7604	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149370			3407	10432	1755	1755							0.08907708356753119
AVRKQRAF	8	Unmodified	_AVRKQRAF_					0	0	0		ENST00000427412.5_1_X:71525187-71525325:-|nuORF	ENST00000427412.5_1_X:71525187-71525325:-|nuORF	ENST00000427412.5_1_X:71525187-71525325:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	488.295968	974.577383	-0.011989	-5.8543E-06	0.10492	5.1234E-05	0.092936	4.538E-05	488.2958924306377	25.499	0.55726	25.468	25.181	25.738	-0.03141	0.023035	0.00034392	NaN	5.7604	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182190			3408	10432	1755	1755							0.08907708356753119
AVRLITSSL	9	Unmodified	_AVRLITSSL_					0	0	0		ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX	ENST00000558958.1_1_15:65449172-65477491:-|nuORF	ENST00000558958.1_1_15:65449172-65477491:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2975769042969	2	480.297842	958.581131	0.44356	0.00021304	0.079402	3.8136E-05	0.52296	0.00025118	480.29779481399106	48.753	0.30589	48.798	48.629	48.935	0.044891					17	10	2	0	0	0	0.020233	1	11189	11189		63.961	29.559	1	241170			3409	6122	1756	1756	4363	4363					0.10018333339962737
AVRLITSSL	9	Unmodified	_AVRLITSSL_					0	0	0		ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX	ENST00000558958.1_1_15:65449172-65477491:-|nuORF	ENST00000558958.1_1_15:65449172-65477491:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	480.297842	958.581131	0.29295	0.0001407	-0.051741	-2.4851E-05	0.24121	0.00011585	480.2979735860901	48.726	0.3882	48.726	48.556	48.944	0	-0.035891	-5.3044E-05	NaN	63.961	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362370			3410	6122	1756	1756							0.10018333339962737
AVRPNSKI	8	Unmodified	_AVRPNSKI_					0	0	0		ENSG00000010072|ENST00000295050|SPRTN	ENSG00000010072|ENST00000295050|SPRTN	ENSG00000010072|ENST00000295050|SPRTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7690124511719	2	442.769252	883.52395	0.12996	5.7542E-05	0.019215	8.5079E-06	0.14917	6.605E-05	442.7690546072468	17.685	0.58824	17.625	17.414	18.002	-0.060429					36	20	3	0	0	0	0.32038	1	1704	1704		28.487	5.3384	1	74882			3411	414	1757	1757	4364	4364					0.07752910854230777
AVRPNSKI	8	Unmodified	_AVRPNSKI_					0	0	0		ENSG00000010072|ENST00000295050|SPRTN	ENSG00000010072|ENST00000295050|SPRTN	ENSG00000010072|ENST00000295050|SPRTN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	442.769252	883.52395	0.16431	7.2753E-05	0.083281	3.6874E-05	0.2476	0.00010963	442.7690906501608	17.533	0.61205	17.533	17.318	17.93	0	-0.054735	1.3236E-06	NaN	28.487	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84694			3412	414	1757	1757							0.07752910854230777
AVRPNSKI	8	Unmodified	_AVRPNSKI_					0	0	0		ENSG00000010072|ENST00000295050|SPRTN	ENSG00000010072|ENST00000295050|SPRTN	ENSG00000010072|ENST00000295050|SPRTN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	442.769252	883.52395	-0.053719	-2.3785E-05	0.2137	9.462E-05	0.15998	7.0834E-05	442.76908809873686	17.723	0.5974	17.606	17.441	18.038	-0.11739	0.018043	0.00011681	NaN	28.487	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83235			3413	414	1757	1757							0.07752910854230777
AVRPVFAHL	9	Unmodified	_AVRPVFAHL_					0	0	0		nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.74481201171875	2	505.300719	1008.58688	0.53702	0.00027135	-0.71	-0.00035876	-0.17298	-8.7408E-05	505.3004596203362	40.505	0.58207	40.505	40.132	40.714	0					29	20	2	0	0	0	0.24311	1	8629	8629		16.942	6.7589	1	186500			3414	3617	1758	1758	4365	4365					0.0829347664226816
AVRPVFAHL	9	Unmodified	_AVRPVFAHL_					0	0	0		nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7446594238281	2	505.300719	1008.58688	0.52373	0.00026464	-0.73456	-0.00037117	-0.21083	-0.00010653	505.3004967847704	40.208	0.56985	40.3	40.123	40.693	0.09267					27	20	2	0	0	0	0.24913	1	8586	8586		12.532	1.4171	1	251820			3415	3617	1758	1758	4366	4366					0.0829347664226816
AVRRRRLLGRL	11	Unmodified	_AVRRRRLLGRL_					0	0	0		ENST00000409965.5_1_2:170681113-170681377:-|nuORF	ENST00000409965.5_1_2:170681113-170681377:-|nuORF	ENST00000409965.5_1_2:170681113-170681377:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.5928955078125	3	455.972378	1364.8953	-0.14499	-6.6112E-05	2.05	0.00093474	1.905	0.00086863	455.97296922360664	30.045	0.58392	30.072	29.838	30.422	0.027157					26	19	2	0	0	0	0.3333	1	5525	5525		1.3296	0	1	167430			3416	10263	1759	1759	4367	4367					0.2274513561301319
AVRTEETK	8	Unmodified	_AVRTEETK_					0	0	0		USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant;nc|ENSG00000123552|Q70EL2-3|USP45;ENSG00000123552|ENST00000500704|USP45	USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant	USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2537841796875	2	467.253631	932.49271	-0.33927	-0.00015852	0.69233	0.00032349	0.35306	0.00016497	467.25388823855815	12.347	0.31027	12.347	12.245	12.555	0					15	9	2	0	0	0	0.41097	1	101	101		18.135	18.135	1	165830			3417	3113	1760	1760	4368	4368					0.02376293029487897
AVRTEETK	8	Unmodified	_AVRTEETK_					0	0	0		USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant;nc|ENSG00000123552|Q70EL2-3|USP45;ENSG00000123552|ENST00000500704|USP45	USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant	USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.25372314453125	2	467.253631	932.49271	-0.21908	-0.00010237	0.61885	0.00028916	0.39977	0.00018679	467.2538642115541	12.353	0.34066	12.256	12.122	12.463	-0.096607					24	11	3	0	0	0	0.35375	1	106	106		24.674	24.674	1	177600			3418	3113	1760	1760	4369	4369					0.02376293029487897
AVRTEETK	8	Unmodified	_AVRTEETK_					0	0	0		USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant;nc|ENSG00000123552|Q70EL2-3|USP45;ENSG00000123552|ENST00000500704|USP45	USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant	USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2538757324219	2	467.253631	932.49271	-0.2367	-0.0001106	0.47847	0.00022357	0.24177	0.00011297	467.25399273757006	12.368	0.38387	12.3	12.196	12.579	-0.068059					22	12	3	0	0	0	0.42077	1	106	106		15.847	15.847	1	168300			3419	3113	1760	1760	4370	4370					0.02376293029487897
AVRTERLRDL	10	Unmodified	_AVRTERLRDL_					0	0	0			REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9083251953125	3	410.242199	1227.70477	-0.085615	-3.5123E-05	1.6964	0.00069595	1.6108	0.00066083	410.24304222443595	16.789	0.92134	16.675	16.075	16.996	-0.11434					46	32	3	0	0	0	0.32122	1	1425	1425		2.086	0.63089	1	45101	+		3420	23209	1761	1761	4371	4371					0.10002384440281276
AVRTPKSV	8	Unmodified	_AVRTPKSV_					0	0	0			REV__ENST00000539421.1_1_17:6014204-6021415:+|nuORF	REV__ENST00000539421.1_1_17:6014204-6021415:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.548828125	2	429.263802	856.513051	-0.26103	-0.00011205	1.2523	0.00053756	0.99124	0.0004255	429.26437972171163	16.788	1.3822	16.674	16.166	17.548	-0.11434					73	49	2	0	0	0	0.31088	1	1413	1413		21.747	0	1	1059200	+		3421	22105	1762	1762	4372	4372					0.07905508479939272
AVRVRVPV	8	Unmodified	_AVRVRVPV_					0	0	0		ENST00000564189.1_2_16:31085877-31086042:+|nuORF	ENST00000564189.1_2_16:31085877-31086042:+|nuORF	ENST00000564189.1_2_16:31085877-31086042:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.881103515625	2	448.295436	894.57632	0.041999	1.8828E-05	0.012053	5.4033E-06	0.054052	2.4231E-05	448.29541704276613	26.324	0.47495	26.285	26.1	26.575	-0.038671					36	16	3	0	0	0	0.34337	1	4268	4268		5.2307	0.47466	1	185050			3422	11944	1763	1763	4373	4373					0.1248149398784335
AVSAGHGLPAK	11	Unmodified	_AVSAGHGLPAK_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2856140136719	2	504.285266	1006.55598	0.1246	6.2836E-05	2.4292	0.001225	2.5538	0.0012879	504.28679170790497	18.56	0.58194	18.442	18.065	18.647	-0.11739					30	19	2	0	0	0	0.29518	1	1990	1990		22.658	14.503	1	68417			3423	2520;11396	1764	1764	4374	4374					0.052962785373551924
AVSAGHGLPAK	11	Unmodified	_AVSAGHGLPAK_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	504.285266	1006.55598	-0.02089	-1.0535E-05	2.7557	0.0013897	2.7348	0.0013791	504.28709705285684	18.534	0.67157	18.476	18.145	18.816	-0.058174	0.016973	0.00018323	NaN	22.658	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83956			3424	2520;11396	1764	1764							0.052962785373551924
AVSAVVHEY	9	Unmodified	_AVSAVVHEY_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7503356933594	2	487.750724	973.486896	0.40403	0.00019706	-0.76657	-0.0003739	-0.36255	-0.00017683	487.7502574327983	33.548	0.9341	33.548	33.259	34.193	0					86	33	4	0	0	0	4.3382E-05	3	6492	6492;6537;6578		149.99	110.04	1	1591600			3425	719	1765	1765	4375;4376;4377	4375					-0.0009080548219344564
AVSAVVHEY	9	Unmodified	_AVSAVVHEY_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7505187988281	2	487.750724	973.486896	0.50306	0.00024537	-0.58822	-0.0002869	-0.085159	-4.1536E-05	487.75034649914534	33.389	1.0214	33.456	33.154	34.176	0.06636					70	36	3	0	0	0	4.0037E-07	2	6450	6450;6497		164.52	118.49	1	1857500			3426	719	1765	1765	4378;4379	4378					-0.0009080548219344564
AVSAVVHEY	9	Unmodified	_AVSAVVHEY_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.75054931640625	2	487.750724	973.486896	0.14404	7.0255E-05	-0.18926	-9.2311E-05	-0.04522	-2.2056E-05	487.7504992472693	33.381	0.74963	33.448	33.158	33.907	0.066704					63	26	3	0	0	0	1.8535E-07	1	6445	6445		172.91	111.55	1	1492300			3427	719	1765	1765	4380	4380					-0.0009080548219344564
AVSAYKQI	8	Unmodified	_AVSAYKQI_					0	0	0		ENSG00000141378|ENST00000393038|PTRH2	ENSG00000141378|ENST00000393038|PTRH2	ENSG00000141378|ENST00000393038|PTRH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.2613220214844	2	440.25036	878.486168	0.16398	7.2191E-05	0.00049159	2.1642E-07	0.16447	7.2408E-05	440.25016043064585	23.64	0.90612	23.602	23.143	24.049	-0.038927					47	31	2	0	0	0	0.4419	1	3576	3576		8.5933	0	1	66726			3428	4371	1766	1766	4381	4381					0.04206399868758126
AVSDDQDLLH	10	Unmodified	_AVSDDQDLLH_					0	0	0		ENSG00000033800|ENST00000249636|PIAS1;nc|ENSG00000033800|O75925-2|PIAS1	ENSG00000033800|ENST00000249636|PIAS1	ENSG00000033800|ENST00000249636|PIAS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3450927734375	2	556.76456	1111.51457	-0.032177	-1.7915E-05	1.6067	0.00089455	1.5745	0.00087664	556.7654081377465	12.971	0.21635	12.971	12.874	13.09	0					11	7	2	0	0	0	0.32123	1	295	295		1.6526	0	1	29740			3429	563	1767	1767	4382	4382					-0.036729470126147135
AVSEGTKAVTK	11	Unmodified	_AVSEGTKAVTK_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000146047|ENST00000274764|H2BC1;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000185130|ENST00000377401|H2BC13;ENSG00000197903|ENST00000356950|H2BC12	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.8089599609375	2	545.808771	1089.60299	0.13293	7.2554E-05	-0.094712	-5.1695E-05	0.038218	2.086E-05	545.8089151410553	13.783	1.1138	13.783	13.509	14.623	0					98	38	5	0	0	0	1.2187E-06	2	551	551;600		132.57	70.965	1	3360600			3430	7510;8012	1768	1768	4383;4384	4383					0.061770932978333803
AVSEGTKAVTK	11	Unmodified	_AVSEGTKAVTK_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000146047|ENST00000274764|H2BC1;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000185130|ENST00000377401|H2BC13;ENSG00000197903|ENST00000356950|H2BC12	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.808837890625	2	545.808771	1089.60299	0.20754	0.00011328	-0.11901	-6.4957E-05	0.088534	4.8322E-05	545.8088630293757	13.883	0.99388	13.778	13.46	14.454	-0.10466					87	34	5	0	0	0	1.2187E-06	2	585	585;631		132.57	70.965	1	3357600			3431	7510;8012	1768	1768	4385;4386	4385					0.061770932978333803
AVSEGTKAVTK	11	Unmodified	_AVSEGTKAVTK_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000146047|ENST00000274764|H2BC1;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000185130|ENST00000377401|H2BC13;ENSG00000197903|ENST00000356950|H2BC12	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8087768554688	2	545.808771	1089.60299	0.22256	0.00012147	-0.078395	-4.2789E-05	0.14416	7.8685E-05	545.808858178555	13.887	0.90601	13.821	13.521	14.427	-0.066068					89	31	5	0	0	0	1.2187E-06	3	582	537;582;631		132.57	70.965	1	3898600			3432	7510;8012	1768	1768	4387;4388;4389	4388					0.061770932978333803
AVSEHRLSNK	10	Unmodified	_AVSEHRLSNK_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENST00000602040.5_1_19:50354666-50357992:+|nuORF	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8096313476562	2	570.809636	1139.60472	-0.10381	-5.9258E-05	0.55131	0.00031469	0.4475	0.00025543	570.8096885907327	12.834	0.30678	12.834	12.724	13.031	0					24	10	3	0	0	0	0.2361	1	251	251		28.234	15.993	1	114510			3433	1938	1769	1769	4390	4390					0.04050147106477198
AVSEHRLSNK	10	Unmodified	_AVSEHRLSNK_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENST00000602040.5_1_19:50354666-50357992:+|nuORF	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8095703125	2	570.809636	1139.60472	0.048116	2.7465E-05	0.35461	0.00020241	0.40272	0.00022988	570.809781493666	12.877	0.51779	12.778	12.407	12.924	-0.099291					30	17	3	0	0	0	0.32877	1	263	263		16.566	11.269	1	85420			3434	1938	1769	1769	4391	4391					0.04050147106477198
AVSEHRLSNK	10	Unmodified	_AVSEHRLSNK_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENST00000602040.5_1_19:50354666-50357992:+|nuORF	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8095703125	2	570.809636	1139.60472	-0.17707	-0.00010107	0.59857	0.00034167	0.4215	0.00024059	570.8099738660457	12.87	0.58387	12.803	12.463	13.047	-0.067496					32	19	2	0	0	0	0.29048	1	261	261		21.59	12.845	1	115350			3435	1938	1769	1769	4392	4392					0.04050147106477198
AVSEKDIQDLK	11	Unmodified	_AVSEKDIQDLK_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.5628356933594	3	415.894354	1244.66123	0.26885	0.00011182	-0.49319	-0.00020512	-0.22434	-9.3301E-05	416.56270826915886	23.824	1.1383	23.785	23.339	24.478	-0.038927					131	39	6	0	0	0	0.39698	1	3521	3521		11.631	11.631	1	685080			3436	862	1770	1770	4393	4393					0.04868730152452372
AVSELMQLFPR	11	Unmodified	_AVSELMQLFPR_					0	0	0		ENST00000471028.1_1_6:31940339-31947204:+|nuORF;ENST00000484540.5_1_6:31940369-31947331:+|nuORF;ENST00000466336.5_1_6:31940188-31948320:+|nuORF;ENST00000473983.5_1_6:31940188-31947331:+|nuORF;ENST00000478486.5_1_6:31940188-31947331:+|nuORF;ENST00000491861.5_1_6:31940339-31948823:+|nuORF;ENSG00000204344|ENST00000685781|STK19;nc|ENSG00000204344|P49842-3|STK19;ENST00000479644.1_1_6:31939773-31940810:+|nuORF;ENST00000469907.1_1_6:31940369-31948823:+|nuORF;ENST00000466132.5_1_6:31939873-31948823:+|nuORF;ENST00000492583.5_1_6:31939873-31948823:+|nuORF;nc|ENSG00000204344|P49842-2|STK19;nc|ENSG00000204344|P49842-1|STK19	ENST00000471028.1_1_6:31940339-31947204:+|nuORF	ENST00000471028.1_1_6:31940339-31947204:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8880310058594	3	430.900674	1289.68019	-0.48376	-0.00020845	-0.24905	-0.00010732	-0.73281	-0.00031577	430.90054759341405	27.824	0.70272	27.821	27.535	28.238	-0.0030708					72	24	4	0	0	0	0.43809	1	4711	4711		6.2344	2.1177	1	1041000			3437	8217	1771	1771	4394	4394					0.04693988242524938
AVSFVKLH	8	Unmodified	_AVSFVKLH_					0	0	0			REV__ENST00000178638.7_1_15:63618224-63618410:-|nuORF	REV__ENST00000178638.7_1_15:63618224-63618410:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2998962402344	2	450.76872	899.522887	0.37999	0.00017129	3.0329	0.0013672	3.4129	0.0015384	450.7707524699392	45.037	0.7343	45.037	44.581	45.315	0					57	26	3	0	0	0	0.33245	1	10099	10099		19.439	0	1	364260	+		3438	19391	1772	1772	4395	4395					0.06910696485329026
AVSFVKLH	8	Unmodified	_AVSFVKLH_					0	0	0			REV__ENST00000178638.7_1_15:63618224-63618410:-|nuORF	REV__ENST00000178638.7_1_15:63618224-63618410:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2997741699219	2	450.76872	899.522887	0.27562	0.00012424	2.5088	0.0011309	2.7845	0.0012551	450.77072247466543	44.92	0.97395	44.988	44.54	45.514	0.068573					75	34	4	0	0	0	0.31375	1	10046	10046		26.341	0	1	417200	+		3439	19391	1772	1772	4396	4396					0.06910696485329026
AVSFVKLH	8	Unmodified	_AVSFVKLH_					0	0	0			REV__ENST00000178638.7_1_15:63618224-63618410:-|nuORF	REV__ENST00000178638.7_1_15:63618224-63618410:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	450.76872	899.522887	0.35926	0.00016194	3.0478	0.0013738	3.407	0.0015358	450.77068806853447	44.919	0.97082	44.994	44.475	45.446	0.075047	-0.012828	0.00016136	NaN	19.439	75	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	506650	+		3440	19391	1772	1772							0.06910696485329026
AVSIGILFFI	10	Unmodified	_AVSIGILFFI_					0	0	0		ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3483276367188	2	540.328611	1078.64267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.528	1	96.523	96.023	97.023	-0.0055466								0	0	0	0.36787	1	25816	25816		7.2892	1.0834	1				3441	1052	1773	1773	4397	4397					0.1064926503922834
AVSKEVTRK	9	Unmodified	_AVSKEVTRK_					0	0	0		ENST00000467733.1_1_3:156262080-156272878:-|nuORF;ENSG00000114850|ENST00000265044|SSR3;nc|ENSG00000114850|Q9UNL2-2|SSR3;ENST00000498205.5_1_3:156260994-156266845:-|nuORF	ENST00000467733.1_1_3:156262080-156272878:-|nuORF	ENST00000467733.1_1_3:156262080-156272878:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.30609130859375	2	509.306198	1016.59784	0.0075741	3.8575E-06	0.37281	0.00018987	0.38038	0.00019373	509.30628049310417	12.178	0.22668	12.081	11.979	12.206	-0.096607					27	9	4	0	0	0	0.15173	1	52	52		30.703	10.289	1	217930			3442	2586	1774	1774	4398	4398					0.09020834225896124
AVSKEVTRK	9	Unmodified	_AVSKEVTRK_					0	0	0		ENST00000467733.1_1_3:156262080-156272878:-|nuORF;ENSG00000114850|ENST00000265044|SSR3;nc|ENSG00000114850|Q9UNL2-2|SSR3;ENST00000498205.5_1_3:156260994-156266845:-|nuORF	ENST00000467733.1_1_3:156262080-156272878:-|nuORF	ENST00000467733.1_1_3:156262080-156272878:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3059387207031	2	509.306198	1016.59784	-0.17507	-8.9166E-05	0.49063	0.00024988	0.31556	0.00016072	509.30640529456906	12.194	0.30204	12.126	11.951	12.253	-0.06806					29	13	4	0	0	0	0.1426	1	49	49		32.037	7.0465	1	154270			3443	2586	1774	1774	4399	4399					0.09020834225896124
AVSLWKLW	8	Unmodified	_AVSLWKLW_					0	0	0		ENSG00000173227|ENST00000527043|SYT12	ENSG00000173227|ENST00000527043|SYT12	ENSG00000173227|ENST00000527043|SYT12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2580261230469	2	501.792195	1001.56984	0.33959	0.0001704	0.61332	0.00030776	0.95291	0.00047816	501.79279118437705	81.263	0.19318	81.239	81.181	81.374	-0.024048					10	7	2	0	0	0	0.34337	1	21127	21127		5.2307	0	1	65661			3444	6705	1775	1775	4400	4400					0.06911556036448019
AVSLWKLW	8	Unmodified	_AVSLWKLW_					0	0	0		ENSG00000173227|ENST00000527043|SYT12	ENSG00000173227|ENST00000527043|SYT12	ENSG00000173227|ENST00000527043|SYT12	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	501.792195	1001.56984	0.32556	0.00016337	1.2324	0.00061842	1.558	0.00078178	501.7928000796834	81.308	0.2344	81.308	81.178	81.412	0	-0.10367	0.00086755	NaN	5.2307	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69293			3445	6705	1775	1775							0.06911556036448019
AVSLWKLW	8	Unmodified	_AVSLWKLW_					0	0	0		ENSG00000173227|ENST00000527043|SYT12	ENSG00000173227|ENST00000527043|SYT12	ENSG00000173227|ENST00000527043|SYT12	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	501.792195	1001.56984	0.083417	4.1858E-05	-1.6944	-0.00085025	-1.611	-0.00080839	501.79110653638054	81.619	0.080658	81.688	81.65	81.73	0.068993	0.27618	-0.0020698	NaN	5.2307	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42735			3446	6705	1775	1775							0.06911556036448019
AVSLWVLGR	9	Unmodified	_AVSLWVLGR_					0	0	0			REV__nc|ENSG00000104852|P08621-4|SNRNP70	REV__nc|ENSG00000104852|P08621-4|SNRNP70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7986755371094	2	500.800552	999.58655	0.4222	0.00021144	-2.9856	-0.0014952	-2.5634	-0.0012838	500.79857270297003	89.166	0.82181	89.256	88.895	89.717	0.090569					120	45	4	0	0	0	0.33276	1	23604	23604		3.9444	0.3479	1	308040	+		3447	22154	1776	1776	4401	4401					0.08674056922416185
AVSNSFLAY	9	Unmodified	_AVSNSFLAY_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;EDC4|p.M271Cfs*23|1|0.09|ENSG00000038358|chr16:67877762-67877762|A/-|frameshift_variant;ENST00000572221.5_1_16:67909733-67911757:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2452392578125	2	486.245275	970.475997	0.63256	0.00030758	-0.39628	-0.00019269	0.23628	0.00011489	486.24500323742836	60.627	0.52128	60.627	60.387	60.908	0					38	18	3	0	0	0	0.0079761	2	14817	14817;14870		82.529	15.185	1	857410			3448	589	1777	1777	4402;4403	4402					-0.010422078564829462
AVSNSFLAY	9	Unmodified	_AVSNSFLAY_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;EDC4|p.M271Cfs*23|1|0.09|ENSG00000038358|chr16:67877762-67877762|A/-|frameshift_variant;ENST00000572221.5_1_16:67909733-67911757:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.24530029296875	2	486.245275	970.475997	0.6109	0.00029705	-0.42767	-0.00020795	0.18323	8.9096E-05	486.2450112206559	60.538	0.57985	60.635	60.369	60.949	0.096989					41	20	3	0	0	0	0.017549	1	14793	14793		67.838	0.49431	1	753590			3449	589	1777	1777	4404	4404					-0.010422078564829462
AVSNSFLAY	9	Unmodified	_AVSNSFLAY_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;EDC4|p.M271Cfs*23|1|0.09|ENSG00000038358|chr16:67877762-67877762|A/-|frameshift_variant;ENST00000572221.5_1_16:67909733-67911757:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2452087402344	2	486.245275	970.475997	0.71682	0.00034855	-0.35405	-0.00017216	0.36277	0.0001764	486.24498010099563	60.645	0.51023	60.635	60.352	60.862	-0.0094566					45	18	3	0	0	0	0.0059482	1	14821	14821		85.642	18.298	1	938240			3450	589	1777	1777	4405	4405					-0.010422078564829462
AVSSLIRNK	9	Unmodified	_AVSSLIRNK_					0	0	0		nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1;ENST00000550448.5_1_12:49398244-49398481:-|nuORF;ENST00000546531.5_1_12:49396684-49399341:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1;ENST00000546531.5_1_12:49396684-49399341:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.30084228515625	2	494.300916	986.587279	0.43165	0.00021337	-0.41713	-0.00020619	0.014527	7.1808E-06	494.30069315121426	21.909	0.54026	21.808	21.557	22.097	-0.10034					36	19	2	0	0	0	0.079752	1	3020	3020		41.84	9.5341	1	266360			3451	7261;11762	1778	1778	4406	4406					0.09344851571472645
AVSSLIRNK	9	Unmodified	_AVSSLIRNK_					0	0	0		nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1;ENST00000550448.5_1_12:49398244-49398481:-|nuORF;ENST00000546531.5_1_12:49396684-49399341:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1;ENST00000546531.5_1_12:49396684-49399341:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	494.300916	986.587279	0.36753	0.00018167	-0.56462	-0.00027909	-0.19709	-9.7423E-05	494.3005627224664	21.825	0.58853	21.825	21.545	22.133	0	0.011701	-0.00014411	NaN	41.84	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258200			3452	7261;11762	1778	1778							0.09344851571472645
AVSSLIRNK	9	Unmodified	_AVSSLIRNK_					0	0	0		nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1;ENST00000550448.5_1_12:49398244-49398481:-|nuORF;ENST00000546531.5_1_12:49396684-49399341:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1;ENST00000546531.5_1_12:49396684-49399341:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	494.300916	986.587279	0.27153	0.00013422	-0.33235	-0.00016428	-0.060826	-3.0067E-05	494.30070590886885	21.857	0.60336	21.807	21.548	22.151	-0.049377	-0.0063397	8.5509E-05	NaN	41.84	38	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271200			3453	7261;11762	1778	1778							0.09344851571472645
AVSTDYKKLKK	11	Unmodified	_AVSTDYKKLKK_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.8826904296875	2	640.88227	1279.74999	0.23438	0.00015021	0.44362	0.00028431	0.67799	0.00043451	640.8825245810888	16.261	0.54043	16.261	15.981	16.521	0					52	18	4	0	0	0	0.31831	2	1284	1234;1284		20.581	11.605	1	166030			3454	7545	1779	1779	4407;4408	4408					0.12130190182779188
AVSTDYKKLKK	11	Unmodified	_AVSTDYKKLKK_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.5917053222656	3	427.590605	1279.74999	-0.20647	-8.8284E-05	0.56927	0.00024342	0.36281	0.00015513	427.5915624583074	16.277	1.35	16.277	15.892	17.242	0					152	46	5	0	0	0	0.0029822	1	1265	1265		62.894	35.765	1	4416800			3455	7545	1779	1779	4409	4409					0.12130190182779188
AVSTDYKKLKK	11	Unmodified	_AVSTDYKKLKK_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.8826904296875	2	640.88227	1279.74999	0.28321	0.00018151	0.33783	0.00021651	0.62104	0.00039802	640.8824975416433	16.38	0.59105	16.265	16.02	16.611	-0.11434					51	20	3	0	0	0	0.2197	2	1331	1284;1331		29.437	9.8112	1	148690			3456	7545	1779	1779	4410;4411	4411					0.12130190182779188
AVSTDYKKLKK	11	Unmodified	_AVSTDYKKLKK_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.5915832519531	3	427.590605	1279.74999	-0.27807	-0.0001189	0.69187	0.00029584	0.41379	0.00017693	427.59152322157513	16.43	1.5139	16.316	15.748	17.262	-0.11434					162	53	5	0	0	0	0.00099561	2	1311	1311;1357		72.276	39.66	1	4319400			3457	7545	1779	1779	4412;4413	4412					0.12130190182779188
AVSTDYKKLKK	11	Unmodified	_AVSTDYKKLKK_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.88232421875	2	640.88227	1279.74999	0.40749	0.00026115	0.20436	0.00013097	0.61185	0.00039212	640.8823985663954	16.255	0.61432	16.193	15.943	16.558	-0.062534					50	20	4	0	0	0	0.2197	2	1252	1252;1303		29.437	16.565	1	211180			3458	7545	1779	1779	4414;4415	4414					0.12130190182779188
AVSTDYKKLKK	11	Unmodified	_AVSTDYKKLKK_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.5916442871094	3	427.590605	1279.74999	-0.135	-5.7727E-05	0.59528	0.00025454	0.46028	0.00019681	427.5915441554346	16.295	1.4586	16.232	15.838	17.296	-0.062534					149	51	5	0	0	0	0.0016895	2	1272	1272;1315		64.688	32.071	1	4819700			3459	7545	1779	1779	4416;4417	4416					0.12130190182779188
AVSTFAMVK	9	Oxidation (M)	_AVSTFAM(Oxidation (M))VK_		AVSTFAM(1)VK		AVSTFAM(110)VK	0	0	1		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.2574157714844	2	485.257328	968.500103	0.10407	5.0501E-05	0.053304	2.5866E-05	0.15738	7.6367E-05	485.2573931781033	31.586	0.8322	31.586	31.231	32.064	0					64	29	3	0	0	0	0.0039377	1	5952	5952		107.19	76.55	1	2164500			3460	6671	1780	1780	4418	4418		766			0.014593093055509598
AVSTFAMVK	9	Oxidation (M)	_AVSTFAM(Oxidation (M))VK_		AVSTFAM(1)VK		AVSTFAM(110)VK	0	0	1		ENSG00000172893|ENST00000355527|DHCR7;ENST00000534701.1_1_11:71149825-71152361:-|nuORF	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.2571716308594	2	485.257328	968.500103	0.12588	6.1083E-05	-0.073967	-3.5893E-05	0.05191	2.519E-05	485.2573712550284	31.548	0.64482	31.59	31.296	31.941	0.042366					61	22	4	0	0	0	0.0024096	2	5934	5885;5934		106.94	63.082	1	2656400			3461	6671	1780	1780	4419;4420	4420		766			0.014593093055509598
AVSTLGISK	9	Unmodified	_AVSTLGISK_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1;nc|ENSG00000103160|Q3SXM5-2|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.8837585449219	2	438.263468	874.512382	0.13596	5.9586E-05	-0.20851	-9.1381E-05	-0.072548	-3.1795E-05	438.2633225610751	30.204	0.50273	30.204	29.945	30.448	0					40	17	3	0	0	0	0.1645	1	5472	5472		40.239	7.4535	1	397000			3462	1814	1781	1781	4421	4421					0.07010669040244011
AVSTLGISK	9	Unmodified	_AVSTLGISK_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1;nc|ENSG00000103160|Q3SXM5-2|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.8838806152344	2	438.263468	874.512382	0.12193	5.3438E-05	-0.32629	-0.000143	-0.20436	-8.9562E-05	438.26324508425967	30.171	0.64753	30.199	29.933	30.58	0.027946					46	22	3	0	0	0	0.1558	1	5500	5500		41.956	5.8285	1	471490			3463	1814	1781	1781	4422	4422					0.07010669040244011
AVSTLGISK	9	Unmodified	_AVSTLGISK_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1;nc|ENSG00000103160|Q3SXM5-2|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.8837585449219	2	438.263468	874.512382	-0.24726	-0.00010836	0.10152	4.4492E-05	-0.14574	-6.3873E-05	438.26345928760753	30.169	0.71302	30.196	29.956	30.669	0.027157					36	24	2	0	0	0	0.1645	1	5464	5464		40.239	5.8375	1	384170			3464	1814	1781	1781	4423	4423					0.07010669040244011
AVSVLQMMI	9	Unmodified	_AVSVLQMMI_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7637634277344	2	496.269381	990.524209	0.8528	0.00042322	-1.9818	-0.00098352	-1.129	-0.0005603	496.26665030330093	50.573	0.10488	50.573	50.518	50.623	0					5	3	2	0	0	0	0.155	1	11753	11753		30.225	3.3412	1	73805	+		3465	16109	1782	1782	4424	4424					0.028568264675527644
AVSYIFSWFEK	11	Unmodified	_AVSYIFSWFEK_					0	0	0			REV__ENSG00000154265|ENST00000392676|ABCA5	REV__ENSG00000154265|ENST00000392676|ABCA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7684020996094	3	459.567689	1375.68124	0.3333	0.00015317	1.5663	0.00071981	1.8996	0.00087299	459.5684555932585	59.425	0.2934	59.414	59.225	59.518	-0.011486					14	9	2	0	0	0	0.33146	1	14465	14465		6.6235	3.3038	1	141780	+		3466	16656	1783	1783	4425	4425					0.0084252588308118
AVSYKEASPG	10	Unmodified	_AVSYKEASPG_					0	0	0			REV__ENST00000484175.5_1_X:154255538-154282944:+|nuORF	REV__ENST00000484175.5_1_X:154255538-154282944:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7542724609375	2	504.753464	1007.49238	0.25243	0.00012742	1.2055	0.00060846	1.4579	0.00073588	504.75410378823824	19.947	0.53014	19.947	19.627	20.157	0					38	19	3	0	0	0	0.36368	1	2359	2359		10.151	1.4052	1	144440	+		3467	17264	1784	1784	4426	4426					-0.011071266903741162
AVSYKEASPG	10	Unmodified	_AVSYKEASPG_					0	0	0			REV__ENST00000484175.5_1_X:154255538-154282944:+|nuORF	REV__ENST00000484175.5_1_X:154255538-154282944:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7545471191406	2	504.753464	1007.49238	0.40574	0.0002048	0.76342	0.00038534	1.1692	0.00059014	504.7539292539555	20.066	0.59758	19.95	19.612	20.209	-0.11592					45	20	3	0	0	0	0.38284	1	2397	2397		6.6304	0.89852	1	118840	+		3468	17264	1784	1784	4427	4427					-0.011071266903741162
AVTAFVTFR	9	Unmodified	_AVTAFVTFR_					0	0	0		ENST00000526903.1_1_11:71671811-71693962:+|nuORF;ENST00000528683.5_1_11:71640101-71701796:+|nuORF;nc|ENSG00000137522|Q9H920-2|RNF121;ENST00000526549.5_1_11:71673326-71707358:+|nuORF;ENSG00000137522|ENST00000361756|RNF121	ENST00000526903.1_1_11:71671811-71693962:+|nuORF	ENST00000526903.1_1_11:71671811-71693962:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8112487792969	2	506.284734	1010.55492	0.4927	0.00024945	0.067865	3.4359E-05	0.56056	0.00028381	506.28424476486805	53.533	1.5643	53.533	52.932	54.496	0					63	30	3	0	0	0	0.11234	1	12629	12629		51.63	24.746	1	2318500			3469	4057	1785	1785	4428	4428					0.050060641684808616
AVTAFVTFR	9	Unmodified	_AVTAFVTFR_					0	0	0		ENST00000526903.1_1_11:71671811-71693962:+|nuORF;ENST00000528683.5_1_11:71640101-71701796:+|nuORF;nc|ENSG00000137522|Q9H920-2|RNF121;ENST00000526549.5_1_11:71673326-71707358:+|nuORF;ENSG00000137522|ENST00000361756|RNF121	ENST00000526903.1_1_11:71671811-71693962:+|nuORF	ENST00000526903.1_1_11:71671811-71693962:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.8112487792969	2	506.284734	1010.55492	0.22687	0.00011486	0.59091	0.00029917	0.81778	0.00041403	506.28458752365145	53.55	0.91003	53.606	53.013	53.923	0.056259					63	33	3	0	0	0	0.0090577	1	12621	12621		89.401	37.132	1	1857600			3470	4057	1785	1785	4429	4429					0.050060641684808616
AVTAFVTFR	9	Unmodified	_AVTAFVTFR_					0	0	0		ENST00000526903.1_1_11:71671811-71693962:+|nuORF;ENST00000528683.5_1_11:71640101-71701796:+|nuORF;nc|ENSG00000137522|Q9H920-2|RNF121;ENST00000526549.5_1_11:71673326-71707358:+|nuORF;ENSG00000137522|ENST00000361756|RNF121	ENST00000526903.1_1_11:71671811-71693962:+|nuORF	ENST00000526903.1_1_11:71671811-71693962:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.81121826171875	2	506.284734	1010.55492	0.40754	0.00020633	0.088521	4.4817E-05	0.49607	0.00025115	506.28445738737764	53.717	1.129	53.707	53.329	54.458	-0.0096054					64	28	3	0	0	0	0.099099	1	12649	12649		47.594	18.513	1	1940200			3471	4057	1785	1785	4430	4430					0.050060641684808616
AVTDAIMSR	9	Oxidation (M)	_AVTDAIM(Oxidation (M))SR_		AVTDAIM(1)SR		AVTDAIM(160)SR	0	0	1		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.24755859375	2	490.247492	978.48043	0.056122	2.7513E-05	0.059229	2.9037E-05	0.11535	5.655E-05	490.2475286263465	27.689	1.067	27.689	27.266	28.333	0					60	36	2	0	0	0	4.984E-07	2	4741	4690;4741		160.69	104.51	1	2335300			3472	5557	1786	1786	4431;4432	4432		669			-0.00967066705209163
AVTDAIMSR	9	Oxidation (M)	_AVTDAIM(Oxidation (M))SR_		AVTDAIM(1)SR		AVTDAIM(140)SR	0	0	1		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2475280761719	2	490.247492	978.48043	0.013459	6.5983E-06	0.12719	6.2353E-05	0.14065	6.8951E-05	490.24757589794734	27.683	0.9679	27.662	27.321	28.289	-0.021412					61	33	2	0	0	0	0.00012746	1	4732	4732		136.39	80.215	1	2261500			3473	5557	1786	1786	4433	4433		669			-0.00967066705209163
AVTDAIMSR	9	Oxidation (M)	_AVTDAIM(Oxidation (M))SR_		AVTDAIM(1)SR		AVTDAIM(140)SR	0	0	1		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.24755859375	2	490.247492	978.48043	-0.025341	-1.2423E-05	0.16382	8.0314E-05	0.13848	6.7891E-05	490.2475807166641	27.611	1.0195	27.599	27.29	28.31	-0.01156					60	35	2	0	0	0	0.00012746	2	4694	4694;4744		136.39	80.215	1	2578700			3474	5557	1786	1786	4434;4435	4434		669			-0.00967066705209163
AVTDQTVSK	9	Unmodified	_AVTDQTVSK_					0	0	0		ENSG00000121058|ENST00000240316|COIL	ENSG00000121058|ENST00000240316|COIL	ENSG00000121058|ENST00000240316|COIL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.77215576171875	2	474.753464	947.492375	0.040677	1.9311E-05	0.564	0.00026776	0.60468	0.00028707	474.75362118262905	16.072	0.64327	15.957	15.718	16.362	-0.11434					42	21	3	0	0	0	0.22143	1	1212	1212		24.991	7.8781	1	124910			3475	2984	1787	1787	4436	4436					0.01652873309626557
AVTKGLSEK	9	Unmodified	_AVTKGLSEK_					0	0	0		ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1;ENST00000574823.5_1_16:11935494-11935832:-|nuORF	ENSG00000171490|ENST00000571133|RSL1D1	ENSG00000171490|ENST00000571133|RSL1D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7526550292969	2	466.7742	931.533846	-0.31003	-0.00014471	-0.87606	-0.00040892	-1.1861	-0.00055364	466.7736671445205	14.071	0.23404	13.966	13.845	14.079	-0.10466					12	7	2	0	0	0	0.25612	1	607	607		8.1555	2.3951	1	64332			3476	6547	1788	1788	4437	4437					0.06534054068958994
AVTKYTSAK	9	Unmodified	_AVTKYTSAK_					0	0	0		ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000197903|ENST00000356950|H2BC12	ENSG00000197903|ENST00000356950|H2BC12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7744445800781	2	484.7742	967.533846	-0.097282	-4.716E-05	0.55626	0.00026966	0.45898	0.0002225	484.7744109236226	13.769	0.42685	13.769	13.597	14.024	0					38	14	3	0	0	0	0.0034464	1	520	520		98.73	41.008	1	646810			3477	8012	1789	1789	4438	4438					0.04878054068944948
AVTKYTSAK	9	Unmodified	_AVTKYTSAK_					0	0	0		ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000197903|ENST00000356950|H2BC12	ENSG00000197903|ENST00000356950|H2BC12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7743835449219	2	484.7742	967.533846	-0.14144	-6.8567E-05	0.47509	0.00023031	0.33365	0.00016174	484.774376965598	13.853	0.51086	13.748	13.538	14.049	-0.10466					41	17	3	0	0	0	0.0022427	1	552	552		108.26	37.93	1	637980			3478	8012	1789	1789	4439	4439					0.04878054068944948
AVTKYTSAK	9	Unmodified	_AVTKYTSAK_					0	0	0		ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000124635|ENST00000339812|H2BC11	ENSG00000197903|ENST00000356950|H2BC12	ENSG00000197903|ENST00000356950|H2BC12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.77447509765625	2	484.7742	967.533846	-0.075175	-3.6443E-05	0.58248	0.00028237	0.5073	0.00024593	484.77442961245663	13.85	0.57452	13.784	13.632	14.206	-0.066068					42	19	3	0	0	0	0.00054505	1	549	549		128.58	58.247	1	694970			3479	8012	1789	1789	4440	4440					0.04878054068944948
AVTKYTSSK	9	Unmodified	_AVTKYTSSK_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000146047|ENST00000274764|H2BC1	ENSG00000185130|ENST00000377401|H2BC13	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.7715759277344	2	492.771657	983.528761	0.034968	1.7231E-05	-0.10221	-5.0365E-05	-0.067238	-3.3133E-05	492.7718548970746	13.185	0.73596	13.185	13.031	13.767	0					83	25	7	0	0	0	2.6179E-07	2	334	334;383		169.92	78.839	1	3122100			3480	7510	1790	1790	4441;4442	4441					0.03633750206336117
AVTKYTSSK	9	Unmodified	_AVTKYTSSK_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000146047|ENST00000274764|H2BC1	ENSG00000185130|ENST00000377401|H2BC13	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.7715759277344	2	492.771657	983.528761	0.030507	1.5033E-05	-0.01737	-8.5592E-06	0.013138	6.474E-06	492.7718722926262	13.244	0.73252	13.144	13.011	13.743	-0.099291					59	25	4	0	0	0	5.6536E-07	2	360	360;405		158.08	76.162	1	3008200			3481	7510	1790	1790	4443;4444	4443					0.03633750206336117
AVTKYTSSK	9	Unmodified	_AVTKYTSSK_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000146047|ENST00000274764|H2BC1	ENSG00000185130|ENST00000377401|H2BC13	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.77154541015625	2	492.771657	983.528761	-0.053546	-2.6386E-05	0.028223	1.3907E-05	-0.025323	-1.2479E-05	492.77189113554863	13.241	0.77938	13.173	12.993	13.773	-0.067496					73	27	5	0	0	0	5.6536E-07	2	349	349;393		158.08	76.162	1	2894700			3482	7510	1790	1790	4445;4446	4445					0.03633750206336117
AVTRQYLLRP	10	Unmodified	_AVTRQYLLRP_					0	0	0		L1M1_dup8526|chr15:66988154-66991154:+|1.855404616008009|0.3427794237982891|2.44|523.0|3|1|sense	L1M1_dup8526|chr15:66988154-66991154:+|1.855404616008009|0.3427794237982891|2.44|523.0|3|1|sense	L1M1_dup8526|chr15:66988154-66991154:+|1.855404616008009|0.3427794237982891|2.44|523.0|3|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.55267333984375	3	406.24354	1215.70879	-0.15759	-6.4021E-05	-0.067507	-2.7424E-05	-0.2251	-9.1446E-05	406.2434055613778	22.324	0.89662	22.224	21.944	22.84	-0.10034					51	32	3	0	0	0	0.31911	1	3121	3121		3.8763	0	1	128150			3483	12440	1791	1791	4447	4447					0.10956473933993038
AVTRTTPVK	9	Unmodified	_AVTRTTPVK_					0	0	0		ENST00000555846.1_1_14:55494079-55498626:+|nuORF;ENST00000395472.2_1_14:55494079-55509730:+|nuORF;ENST00000553735.1_1_14:55494079-55498700:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7954406738281	2	486.795466	971.57638	-0.055289	-2.6914E-05	-0.018106	-8.8139E-06	-0.073395	-3.5728E-05	486.7954379502306	14.072	0.72037	14.072	13.902	14.623	0					49	24	3	0	0	0	0.015027	1	607	607		71.708	33.734	1	933520			3484	10089	1792	1792	4448	4448					0.08945449197187827
AVTRTTPVK	9	Unmodified	_AVTRTTPVK_					0	0	0		ENST00000555846.1_1_14:55494079-55498626:+|nuORF;ENST00000395472.2_1_14:55494079-55509730:+|nuORF;ENST00000553735.1_1_14:55494079-55498700:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7955322265625	2	486.795466	971.57638	-0.073984	-3.6015E-05	0.15677	7.6313E-05	0.082782	4.0298E-05	486.7954791212447	14.156	0.61599	14.051	13.873	14.489	-0.10466					51	20	4	0	0	0	0.0044119	1	632	632		91.085	47.227	1	912790			3485	10089	1792	1792	4449	4449					0.08945449197187827
AVTRTTPVK	9	Unmodified	_AVTRTTPVK_					0	0	0		ENST00000555846.1_1_14:55494079-55498626:+|nuORF;ENST00000395472.2_1_14:55494079-55509730:+|nuORF;ENST00000553735.1_1_14:55494079-55498700:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	ENST00000555846.1_1_14:55494079-55498626:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7955017089844	2	486.795466	971.57638	-0.044931	-2.1872E-05	0.062066	3.0213E-05	0.017135	8.3411E-06	486.79541677554306	14.14	0.69897	14.074	13.889	14.588	-0.066068					57	24	3	0	0	0	0.011547	1	629	629		77.049	44.263	1	769390			3486	10089	1792	1792	4450	4450					0.08945449197187827
AVTSGVATK	9	Unmodified	_AVTSGVATK_					0	0	0		nc|ENSG00000249992|Q8WZ71-2|TMEM158;ENSG00000249992|ENST00000503771|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.910400390625	2	417.239993	832.465432	-0.022424	-9.3563E-06	-0.28274	-0.00011797	-0.30517	-0.00012733	417.23979830681355	15.176	0.41653	15.067	14.93	15.347	-0.10981					22	14	2	0	0	0	0.25431	1	940	940		9.3831	1.473	1	71020			3487	8587	1793	1793	4451	4451					0.042498094890902394
AVTTVVNPK	9	Unmodified	_AVTTVVNPK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7764892578125	2	464.776742	927.538931	-0.056385	-2.6206E-05	1.6263	0.00075587	1.5699	0.00072967	464.7766837880205	24.901	0.92863	24.901	24.605	25.533	0					78	31	5	0	0	0	0.0042138	1	3857	3857		92.653	54.478	1	626150			3488	4903	1794	1794	4452	4452					0.07226357931563143
AVTTVVNPK	9	Unmodified	_AVTTVVNPK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7764587402344	2	464.776742	927.538931	-0.12255	-5.6957E-05	-0.041851	-1.9451E-05	-0.1644	-7.6408E-05	464.7767080084817	24.927	0.91359	24.871	24.6	25.514	-0.055931					62	31	3	0	0	0	0.0028626	2	3884	3884;3930		103.35	65.178	1	657670			3489	4903	1794	1794	4453;4454	4453					0.07226357931563143
AVTTVVNPK	9	Unmodified	_AVTTVVNPK_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7767333984375	2	464.776742	927.538931	-0.16771	-7.7946E-05	0.059991	2.7883E-05	-0.10771	-5.0063E-05	464.77674505445276	24.907	0.91631	24.876	24.627	25.543	-0.031408					67	31	3	0	0	0	0.0028626	2	3911	3865;3911		103.35	57.333	1	646880			3490	4903	1794	1794	4455;4456	4456					0.07226357931563143
AVTYTEHAK	9	Unmodified	_AVTYTEHAK_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.277587890625	2	510.261456	1018.50836	0.0079276	4.0452E-06	0.022701	1.1584E-05	0.030629	1.5629E-05	510.2614820687167	14.272	0.4778	14.272	14.113	14.591	0					42	16	4	0	0	0	0.23235	1	670	670		21.537	3.3906	1	120900			3491	5353	1795	1795	4457	4457					-0.00015420453473780071
AVTYTEHAK	9	Unmodified	_AVTYTEHAK_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2777404785156	2	510.261456	1018.50836	-0.039131	-1.9967E-05	-0.21042	-0.00010737	-0.24956	-0.00012734	510.2614052282549	14.377	0.48708	14.272	14.105	14.592	-0.10466					39	16	4	0	0	0	0.21538	1	708	708		26.268	11.43	1	98485			3492	5353	1795	1795	4458	4458					-0.00015420453473780071
AVTYTEHAK	9	Unmodified	_AVTYTEHAK_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2613830566406	2	510.261456	1018.50836	-0.080909	-4.1285E-05	-0.47741	-0.0002436	-0.55832	-0.00028489	510.2615256766565	14.396	0.54642	14.33	14.07	14.616	-0.066068					48	19	5	0	0	0	0.23235	1	710	710		21.537	21.537	1	94399			3493	5353	1795	1795	4459	4459					-0.00015420453473780071
AVVDIYHSR	9	Unmodified	_AVVDIYHSR_					0	0	0		nc|ENSG00000276234|O75478-2|TADA2A;nc|ENSG00000276234|O75478|TADA2A;ENSG00000276234|ENST00000615182|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7930908203125	2	530.282723	1058.55089	0.59655	0.00031634	-0.72191	-0.00038282	-0.12536	-6.6478E-05	530.282473801656	30.238	0.33368	30.238	29.999	30.333	0					16	11	2	0	0	0	0.26807	1	5504	5504		13.615	0.5724	1	73177			3494	8725	1796	1796	4460	4460					0.023959746747550525
AVVELVTVK	9	Unmodified	_AVVELVTVK_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.30267333984375	2	479.302593	956.590633	0.50051	0.00023989	-0.312	-0.00014954	0.1885	9.035E-05	479.302374335192	45.612	0.46631	45.612	45.393	45.86	0					42	16	3	0	0	0	0.060198	1	10210	10210		71.708	29.868	1	1012200			3495	7281	1797	1797	4461	4461					0.11060101625469088
AVVELVTVK	9	Unmodified	_AVVELVTVK_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.29022216796875	2	479.302593	956.590633	0.39529	0.00018946	-0.38184	-0.00018302	0.013443	6.4433E-06	479.3023983411943	45.574	0.45276	45.634	45.418	45.871	0.059834					37	15	3	0	0	0	0.12056	1	10206	10206		43.982	25.836	1	999690			3496	7281	1797	1797	4462	4462					0.11060101625469088
AVVELVTVK	9	Unmodified	_AVVELVTVK_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.3026428222656	2	479.302593	956.590633	0.42795	0.00020512	-0.31199	-0.00014954	0.11596	5.5579E-05	479.3024213197214	45.586	0.46344	45.651	45.408	45.872	0.065048					41	16	3	0	0	0	0.069258	1	10205	10205		45.74	16.658	1	1077100			3497	7281	1797	1797	4463	4463					0.11060101625469088
AVVGAVVFQK	10	Unmodified	_AVVGAVVFQK_					0	0	0		ENSG00000169223|ENST00000303127|LMAN2;ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF	ENSG00000169223|ENST00000303127|LMAN2	ENSG00000169223|ENST00000303127|LMAN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3083801269531	2	509.30821	1016.60187	0.58723	0.00029908	-0.13005	-6.6238E-05	0.45718	0.00023284	509.3078649066017	44.71	0.60735	44.71	44.462	45.069	0					73	21	5	0	0	0	0.0029259	1	9925	9925		103.75	70.963	1	1198300			3498	6337	1798	1798	4464	4464					0.09422923719614573
AVVGAVVFQK	10	Unmodified	_AVVGAVVFQK_					0	0	0		ENSG00000169223|ENST00000303127|LMAN2;ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF	ENSG00000169223|ENST00000303127|LMAN2	ENSG00000169223|ENST00000303127|LMAN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.30804443359375	2	509.30821	1016.60187	0.42355	0.00021572	-0.36474	-0.00018577	0.058805	2.995E-05	509.3078812777093	44.587	0.68322	44.662	44.418	45.101	0.07505					55	24	3	0	0	0	0.0010078	1	9890	9890		92.491	59.706	1	1045500			3499	6337	1798	1798	4465	4465					0.09422923719614573
AVVGGLDIHKK	11	Unmodified	_AVVGGLDIHKK_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.8432006835938	2	568.842948	1135.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.694	1	24.663	24.163	25.163	-0.031408								0	0	0	0.36839	1	3826	3826		4.1895	0.59301	1				3500	8421	1799	1799	4466	4466					0.10893382668359664
AVVLWWFAKLL	11	Unmodified	_AVVLWWFAKLL_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.27362060546875	3	449.272548	1344.79581	0.27698	0.00012444	0.89786	0.00040338	1.1748	0.00052782	449.2732728312689	39.776	0.62128	39.868	39.662	40.284	0.09267					26	21	2	0	0	0	0.44443	1	8411	8411		5.4027	2.0831	1	654210	+		3501	14366	1800	1800	4467	4467					0.13720880155688064
AVVLWWFAKLL	11	Unmodified	_AVVLWWFAKLL_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.2737731933594	3	449.272548	1344.79581	0.22947	0.00010309	0.4682	0.00021035	0.69767	0.00031345	449.2733333941113	39.712	0.55283	39.812	39.593	40.146	0.099407					33	19	4	0	0	0	0.44443	1	8399	8399		5.4027	1.8157	1	364100	+		3502	14366	1800	1800	4468	4468					0.13720880155688064
AVVLWWFAKLL	11	Unmodified	_AVVLWWFAKLL_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	449.272548	1344.79581	0.22947	0.00010309	0.4682	0.00021035	0.69767	0.00031345	449.2733333941113	39.712	0.55283	39.812	39.593	40.146	0.099407	-0.02821	-0.00030734	NaN	5.4027	33	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	364100	+		3503	14366	1800	1800							0.13720880155688064
AVVSVIFLK	9	Unmodified	_AVVSVIFLK_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3;TMTC3|p.N621Sfs*8|1|0.03|ENSG00000139324|chr12:88192757-88192758|-/TCGAA|frameshift_variant;TMTC3|p.S557Tfs*2|1|0.32|ENSG00000139324|chr12:88190586-88190586|G/-|frameshift_variant	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.80548095703125	2	488.315503	974.616454	0.23972	0.00011706	0.23193	0.00011325	0.47165	0.00023031	488.31543086749707	62.033	0.48167	62.033	61.784	62.266	0					38	17	3	0	0	0	0.059216	1	15259	15259		60.074	36.925	1	904760			3504	4229	1801	1801	4469	4469					0.12812995867750487
AVVSVIFLK	9	Unmodified	_AVVSVIFLK_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3;TMTC3|p.N621Sfs*8|1|0.03|ENSG00000139324|chr12:88192757-88192758|-/TCGAA|frameshift_variant;TMTC3|p.S557Tfs*2|1|0.32|ENSG00000139324|chr12:88190586-88190586|G/-|frameshift_variant	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.8055419921875	2	488.315503	974.616454	-0.074504	-3.6381E-05	0.26249	0.00012818	0.18799	9.1797E-05	488.31554636291014	61.902	0.46926	61.999	61.759	62.228	0.096989					28	16	2	0	0	0	0.10058	1	15224	15224		53.833	29.159	1	908620			3505	4229	1801	1801	4470	4470					0.12812995867750487
AVVSVIFLK	9	Unmodified	_AVVSVIFLK_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3;TMTC3|p.N621Sfs*8|1|0.03|ENSG00000139324|chr12:88192757-88192758|-/TCGAA|frameshift_variant;TMTC3|p.S557Tfs*2|1|0.32|ENSG00000139324|chr12:88190586-88190586|G/-|frameshift_variant	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.8054504394531	2	488.315503	974.616454	0.12408	6.0588E-05	0.2253	0.00011002	0.34937	0.0001706	488.3154806154212	62.008	0.49093	61.999	61.728	62.219	-0.0085526					38	17	3	0	0	0	0.075169	1	15239	15239		62.573	30.267	1	925350			3506	4229	1801	1801	4471	4471					0.12812995867750487
AVVTTKYFK	9	Unmodified	_AVVTTKYFK_					0	0	0		nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4;nc|ENSG00000168679|O15374-3|SLC16A4;SLC16A4|p.D170Cfs*16|1|0.27|ENSG00000168679|chr1:110380998-110381001|ATCT/-|frameshift_variant	nc|ENSG00000168679|O15374-4|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8084106445312	2	528.808042	1055.60153	0.29613	0.0001566	1.4873	0.0007865	1.7834	0.00094309	528.8088736838047	31.371	0.78175	31.371	31.118	31.9	0					73	27	5	0	0	0	0.0032746	2	5841	5841;5884		100.09	54.07	1	1749100			3507	6293	1802	1802	4472;4473	4472					0.075955039997325
AVVTTKYFK	9	Unmodified	_AVVTTKYFK_					0	0	0		nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4;nc|ENSG00000168679|O15374-3|SLC16A4;SLC16A4|p.D170Cfs*16|1|0.27|ENSG00000168679|chr1:110380998-110381001|ATCT/-|frameshift_variant	nc|ENSG00000168679|O15374-4|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8084716796875	2	528.808042	1055.60153	0.15938	8.4284E-05	1.2782	0.00067591	1.4376	0.0007602	528.8087602954694	31.371	0.57421	31.413	31.078	31.652	0.042364					58	20	4	0	0	0	0.0032746	2	5833	5833;5884		100.09	54.391	1	1571600			3508	6293	1802	1802	4474;4475	4474					0.075955039997325
AVVTTKYFK	9	Unmodified	_AVVTTKYFK_					0	0	0		nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4;nc|ENSG00000168679|O15374-3|SLC16A4;SLC16A4|p.D170Cfs*16|1|0.27|ENSG00000168679|chr1:110380998-110381001|ATCT/-|frameshift_variant	nc|ENSG00000168679|O15374-4|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.80859375	2	528.808042	1055.60153	0.44803	0.00023692	1.0496	0.00055504	1.4976	0.00079196	528.8086486283037	31.272	0.54953	31.313	31.07	31.62	0.040991					58	19	4	0	0	0	0.0032746	2	5816	5816;5857		100.09	61.915	1	1656600			3509	6293	1802	1802	4476;4477	4476					0.075955039997325
AVWKKPFRF	9	Unmodified	_AVWKKPFRF_					0	0	0		nc|ENSG00000205702|A0A087X1C5|CYP2D7	nc|ENSG00000205702|A0A087X1C5|CYP2D7	nc|ENSG00000205702|A0A087X1C5|CYP2D7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8464965820312	2	589.845294	1177.67603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.59	1	113.61	113.11	114.11	0.014824								0	0	0	0.26704	1	29551	29551		0.6015	0.076735	1				3510	12914	1803	1803	4478	4478					0.094303116017727
AVWWDRRRPLS	11	Unmodified	_AVWWDRRRPLS_					0	0	0		ENSG00000161677|ENST00000598418|JOSD2	ENSG00000161677|ENST00000598418|JOSD2	ENSG00000161677|ENST00000598418|JOSD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.26470947265625	3	481.265227	1440.77385	0.18201	8.7593E-05	-0.36779	-0.00017701	-0.18579	-8.9413E-05	481.26493721807776	43.136	0.75941	43.136	42.871	43.63	0					73	27	4	0	0	0	0.38765	2	9430	9430;9488		12.856	3.0917	1	1405800			3511	5525	1804	1804	4479;4480	4479					0.07109468459839263
AVYADSGNFK	10	Unmodified	_AVYADSGNFK_					0	0	0		ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2583618164062	2	536.258914	1070.50327	0.41557	0.00022286	-0.51163	-0.00027437	-0.096058	-5.1512E-05	536.2583493664617	30.051	0.5624	30.073	29.813	30.375	0.021851					47	19	3	0	0	0	0.19345	1	5479	5479		33.445	24.699	1	315180			3512	4673	1805	1805	4481	4481					-0.029157243160852886
AVYADSGNFK	10	Unmodified	_AVYADSGNFK_					0	0	0		ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	536.258914	1070.50327	0.59637	0.00031981	-0.75716	-0.00040603	-0.16079	-8.6225E-05	536.2583778249862	30.049	0.47585	30.049	29.833	30.309	0	-0.018916	-0.00033781	NaN	33.445	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345130			3513	4673	1805	1805							-0.029157243160852886
AVYADSGNFK	10	Unmodified	_AVYADSGNFK_					0	0	0		ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	536.258914	1070.50327	0.18022	9.6646E-05	-0.12299	-6.5955E-05	0.057233	3.0692E-05	536.2587035744536	30.054	0.50017	30.081	29.894	30.394	0.027157	0.01342	0.00034235	NaN	33.445	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284620			3514	4673	1805	1805							-0.029157243160852886
AVYDFFIGR	9	Unmodified	_AVYDFFIGR_					0	0	0		ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2828369140625	2	544.282192	1086.54983	0.533	0.0002901	0.6524	0.00035509	1.1854	0.00064519	544.2826122831397	67.125	1.0443	67.203	66.789	67.834	0.078041					138	36	5	0	0	0	0.00045155	4	16831	16781;16831;16874;16924		129.77	54.843	1	10460000			3515	4550	1806	1806	4482;4483;4484;4485	4483					0.010017603058486202
AVYDFFIGR	9	Unmodified	_AVYDFFIGR_					0	0	0		ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2828369140625	2	544.282192	1086.54983	0.44701	0.0002433	0.67658	0.00036825	1.1236	0.00061155	544.2826846286517	67.27	1.3662	67.253	66.921	68.287	-0.016304					127	47	4	0	0	0	0.0013683	2	16864	16864;16909		118.07	52.833	1	10952000			3516	4550	1806	1806	4486;4487	4486					0.010017603058486202
AVYDFFIGR	9	Unmodified	_AVYDFFIGR_					0	0	0		ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	544.282192	1086.54983	0.43937	0.00023914	0.64614	0.00035168	1.0855	0.00059083	544.2825784704293	67.254	0.9609	67.254	66.881	67.842	0	0.01761	-1.1109E-05	NaN	129.77	133	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9874700			3517	4550	1806	1806							0.010017603058486202
AVYDQFSDPQM	11	Unmodified	_AVYDQFSDPQM_					0	0	0			REV__ENST00000366769.7_1_1:227505246-227505423:-|nuORF	REV__ENST00000366769.7_1_1:227505246-227505423:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8819274902344	3	434.188661	1299.54415	-0.16008	-6.9503E-05	3.2879	0.0014276	3.1278	0.0013581	434.1899817200269	24.406	0.35939	24.406	24.279	24.639	0					14	11	2	0	0	0	0.33326	1	3801	3801		1.4551	0.12547	1	23569	+		3518	20298	1807	1807	4488	4488					-0.0936375105877687
AVYDRPGASPK	11	Unmodified	_AVYDRPGASPK_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8074340820312	2	580.806562	1159.59857	0.28638	0.00016633	-0.46423	-0.00026963	-0.17785	-0.0001033	580.8068496517051	20.233	0.55798	20.233	20.092	20.65	0					33	20	2	0	0	0	0.20863	1	2469	2469		30.431	16.026	1	165770			3519	549	1808	1808	4489	4489					0.02515628874948561
AVYDRPGASPK	11	Unmodified	_AVYDRPGASPK_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8070068359375	2	580.806562	1159.59857	0.51555	0.00029943	-0.55175	-0.00032046	-0.036197	-2.1023E-05	580.8067301667442	20.458	0.45092	20.348	20.215	20.666	-0.11003					28	16	2	0	0	0	0.15687	2	2541	2541;2593		35.08	20.674	1	167210			3520	549	1808	1808	4490;4491	4490					0.02515628874948561
AVYDRPGASPK	11	Unmodified	_AVYDRPGASPK_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8068237304688	2	580.806562	1159.59857	0.61852	0.00035924	-0.67218	-0.00039041	-0.053655	-3.1163E-05	580.8065978267504	20.366	0.60119	20.313	20.037	20.638	-0.05291					29	21	2	0	0	0	0.15687	1	2491	2491		35.08	20.674	1	177900			3521	549	1808	1808	4492	4492					0.02515628874948561
AVYDVFVFH	9	Unmodified	_AVYDVFVFH_					0	0	0		ENST00000551915.5_1_12:83081308-83379891:+|nuORF;TMTC2|p.A737Qfs*4|1|0.28|ENSG00000179104|chr12:83050953-83050953|A/-|frameshift_variant;ENSG00000179104|ENST00000321196|TMTC2	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2977905273438	2	548.776742	1095.53893	0.42512	0.00023329	-0.097567	-5.3542E-05	0.32755	0.00017975	548.7770554424311	69.878	0.51781	69.856	69.591	70.109	-0.022087					38	18	3	0	0	0	0.24913	1	17716	17716		12.532	1.7076	1	225170			3522	7102	1809	1809	4493	4493					-0.005016420684114564
AVYELERILNR	11	Unmodified	_AVYELERILNR_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.758544921875	3	459.261259	1374.76195	0.24026	0.00011034	-0.52749	-0.00024226	-0.28723	-0.00013191	459.2608710297701	55.179	0.94669	55.179	54.811	55.758	0					62	34	3	0	0	0	0.25177	1	13139	13139		37.251	21.712	1	1297400			3523	886	1810	1810	4494	4494					0.08955806925996512
AVYELERILNR	11	Unmodified	_AVYELERILNR_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7585754394531	3	459.261259	1374.76195	0.3664	0.00016827	-0.54459	-0.00025011	-0.17819	-8.1836E-05	459.26081947389247	55.079	0.80421	55.149	54.841	55.645	0.069874					63	29	3	0	0	0	0.28403	1	13088	13088		28.181	25.929	1	1219300			3524	886	1810	1810	4495	4495					0.08955806925996512
AVYELERILNR	11	Unmodified	_AVYELERILNR_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2613830566406	3	459.261259	1374.76195	0.2352	0.00010802	-0.50715	-0.00023291	-0.27194	-0.00012489	459.26089270784513	55.382	0.69424	55.363	54.976	55.671	-0.019081					62	25	4	0	0	0	0.32907	1	13260	13260		19.615	14.092	1	1227900			3525	886	1810	1810	4496	4496					0.08955806925996512
AVYENAREK	9	Unmodified	_AVYENAREK_					0	0	0		ENST00000523321.5_1_8:95835614-95871872:+|nuORF;nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8	ENST00000523321.5_1_8:95835614-95871872:+|nuORF	ENST00000523321.5_1_8:95835614-95871872:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.278564453125	2	540.277638	1078.54072	0.16356	8.8366E-05	1.1009	0.0005948	1.2645	0.00068317	540.2779329153501	14.199	0.68686	14.199	13.962	14.649	0					57	23	4	0	0	0	0.044909	1	644	644		78.06	45.755	1	570710			3526	5904	1811	1811	4497	4497					0.004593669495079666
AVYENAREK	9	Unmodified	_AVYENAREK_					0	0	0		ENST00000523321.5_1_8:95835614-95871872:+|nuORF;nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8	ENST00000523321.5_1_8:95835614-95871872:+|nuORF	ENST00000523321.5_1_8:95835614-95871872:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2784423828125	2	540.277638	1078.54072	0.15395	8.3177E-05	0.22249	0.00012021	0.37644	0.00020338	540.2777601109307	14.336	0.63247	14.231	14.079	14.711	-0.10466					55	21	4	0	0	0	0.013404	1	682	682		74.2	34.242	1	604200			3527	5904	1811	1811	4498	4498					0.004593669495079666
AVYENAREK	9	Unmodified	_AVYENAREK_					0	0	0		ENST00000523321.5_1_8:95835614-95871872:+|nuORF;nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8	ENST00000523321.5_1_8:95835614-95871872:+|nuORF	ENST00000523321.5_1_8:95835614-95871872:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.278076171875	2	540.277638	1078.54072	0.20025	0.00010819	0.41755	0.00022559	0.6178	0.00033378	540.2778345948915	14.314	0.54642	14.247	14.07	14.616	-0.066068					37	19	2	0	0	0	0.013404	1	673	673		74.2	34.242	1	508700			3528	5904	1811	1811	4499	4499					0.004593669495079666
AVYETPTAH	9	Unmodified	_AVYETPTAH_					0	0	0		nc|ENSG00000078902|Q9H0E2-2|TOLLIP;ENSG00000078902|ENST00000317204|TOLLIP	nc|ENSG00000078902|Q9H0E2-2|TOLLIP	nc|ENSG00000078902|Q9H0E2-2|TOLLIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7403259277344	2	494.740357	987.46616	0.31181	0.00015427	0.40844	0.00020207	0.72025	0.00035634	494.74048449429404	26.656	0.79061	26.656	26.189	26.979	0					49	27	3	0	0	0	0.037693	1	4399	4399		57.471	21.427	1	244500			3529	1122	1812	1812	4500	4500					-0.028073958618620054
AVYETPTAH	9	Unmodified	_AVYETPTAH_					0	0	0		nc|ENSG00000078902|Q9H0E2-2|TOLLIP;ENSG00000078902|ENST00000317204|TOLLIP	nc|ENSG00000078902|Q9H0E2-2|TOLLIP	nc|ENSG00000078902|Q9H0E2-2|TOLLIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.740966796875	2	494.740357	987.46616	0.34612	0.00017124	0.65844	0.00032576	1.0046	0.000497	494.74058940522326	26.642	0.61933	26.604	26.29	26.909	-0.038671					49	21	3	0	0	0	0.062246	1	4410	4410		48.346	12.302	1	263490			3530	1122	1812	1812	4501	4501					-0.028073958618620054
AVYETPTAH	9	Unmodified	_AVYETPTAH_					0	0	0		nc|ENSG00000078902|Q9H0E2-2|TOLLIP;ENSG00000078902|ENST00000317204|TOLLIP	nc|ENSG00000078902|Q9H0E2-2|TOLLIP	nc|ENSG00000078902|Q9H0E2-2|TOLLIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7407531738281	2	494.740357	987.46616	0.52829	0.00026137	0.27637	0.00013673	0.80466	0.0003981	494.740391247774	26.623	0.61741	26.601	26.356	26.974	-0.022236					44	21	3	0	0	0	0.037693	1	4411	4411		57.471	21.427	1	253730			3531	1122	1812	1812	4502	4502					-0.028073958618620054
AVYGMLNLTPK	11	Oxidation (M)	_AVYGM(Oxidation (M))LNLTPK_		AVYGM(1)LNLTPK		AVYGM(140)LNLTPK	0	0	1		ENST00000411676.6_1_18:55274615-55283204:-|nuORF;ENSG00000134440|ENST00000256854|NARS1	ENST00000411676.6_1_18:55274615-55283204:-|nuORF	ENST00000411676.6_1_18:55274615-55283204:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.82861328125	2	611.828649	1221.64274	0.49842	0.00030495	-0.35551	-0.00021751	0.14291	8.7438E-05	611.8283267912833	48.361	0.58781	48.361	48.106	48.694	0					48	20	3	0	0	0	5.9792E-06	1	11087	11087		139.38	102.87	1	1743800			3532	3784	1813	1813	4503	4503		472			0.0407889697689825
AVYGMLNLTPK	11	Oxidation (M)	_AVYGM(Oxidation (M))LNLTPK_		AVYGM(1)LNLTPK		AVYGM(130)LNLTPK	0	0	1		ENST00000411676.6_1_18:55274615-55283204:-|nuORF;ENSG00000134440|ENST00000256854|NARS1	ENST00000411676.6_1_18:55274615-55283204:-|nuORF	ENST00000411676.6_1_18:55274615-55283204:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.82861328125	2	611.828649	1221.64274	0.67975	0.00041589	-0.37882	-0.00023177	0.30093	0.00018412	611.8282936858797	48.358	0.58689	48.405	48.158	48.745	0.047523					53	21	3	0	0	0	9.6797E-06	1	11089	11089		128.58	98.738	1	1868800			3533	3784	1813	1813	4504	4504		472			0.0407889697689825
AVYGMLNLTPK	11	Oxidation (M)	_AVYGM(Oxidation (M))LNLTPK_		AVYGM(1)LNLTPK		AVYGM(140)LNLTPK	0	0	1		ENST00000411676.6_1_18:55274615-55283204:-|nuORF;ENSG00000134440|ENST00000256854|NARS1	ENST00000411676.6_1_18:55274615-55283204:-|nuORF	ENST00000411676.6_1_18:55274615-55283204:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.8287963867188	2	611.828649	1221.64274	0.4931	0.00030169	-0.18849	-0.00011532	0.30461	0.00018637	611.8284636323407	48.283	0.63039	48.326	48.065	48.695	0.04332					58	23	3	0	0	0	6.7459E-06	1	11009	11009		135.86	99.357	1	1856300			3534	3784	1813	1813	4505	4505		472			0.0407889697689825
AVYHTLLLRQF	11	Unmodified	_AVYHTLLLRQF_					0	0	0			REV__ENST00000464104.5_1_9:98997744-99012284:-|nuORF	REV__ENST00000464104.5_1_9:98997744-99012284:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.26202392578125	3	454.262712	1359.76631	-0.14221	-6.4602E-05	-1.2562	-0.00057064	-1.3984	-0.00063525	454.2623475168669	27.677	0.95704	27.656	27.411	28.368	-0.021412					106	33	5	0	0	0	0.32493	2	4716	4716;4832		19.987	7.7593	1	3501800	+		3535	15491	1814	1814	4506;4507	4506					0.10081316139530827
AVYICYLKKK	10	Unmodified	_AVYICYLKKK_					0	0	0			REV__ENST00000573189.2_1_16:72039593-72040031:-|nuORF	REV__ENST00000573189.2_1_16:72039593-72040031:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.8880310058594	3	410.24226	1227.70495	-0.092018	-3.775E-05	1.647	0.00067567	1.555	0.00063792	410.24280691563405	22.765	0.53031	22.678	22.379	22.909	-0.087608					39	18	3	0	0	0	0.31911	1	3246	3246		3.8763	0	1	84581	+		3536	16570	1815	1815	4508	4508					0.10020668115907938
AVYKVKEELLK	11	Unmodified	_AVYKVKEELLK_					0	0	0		ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ATF7IP|p.S888Lfs*22|1|0.46|ENSG00000171681|chr12:14460997-14460997|T/-|frameshift_variant;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.9084777832031	3	440.602622	1318.78604	0.16547	7.2908E-05	-0.19654	-8.6598E-05	-0.031071	-1.369E-05	440.9368727934009	32.698	0.29984	32.752	32.603	32.903	0.054371					16	10	2	0	0	0	0.33277	1	6254	6254		3.0723	0.63748	1	149510			3537	61	1816	1816	4509	4509					0.1393964735964346
AVYLLPVPK	9	Unmodified	_AVYLLPVPK_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.30743408203125	2	500.315503	998.616454	0.41442	0.00020734	0.94369	0.00047214	1.3581	0.00067948	500.3159663399042	57.624	0.85446	57.624	57.246	58.1	0					73	30	3	0	0	0	0.029841	3	14015	13910;13957;14015		60.39	31.625	1	1599500			3538	8057	1817	1817	4510;4511;4512	4512					0.11708995867752492
AVYLLPVPK	9	Unmodified	_AVYLLPVPK_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.31610107421875	2	500.315503	998.616454	0.3787	0.00018947	1.135	0.00056786	1.5137	0.00075733	500.31609221670465	57.432	1.055	57.518	56.89	57.945	0.085617					77	38	3	0	0	0	0.017871	2	13871	13871;13934		67.344	39.715	1	1558200			3539	8057	1817	1817	4513;4514	4513					0.11708995867752492
AVYLLPVPK	9	Unmodified	_AVYLLPVPK_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3174133300781	2	500.315503	998.616454	0.20802	0.00010408	1.2045	0.00060264	1.4125	0.00070671	500.31616861322976	57.572	0.98186	57.555	56.946	57.928	-0.017197					80	35	4	0	0	0	0.029841	3	13955	13912;13955;13980		60.39	35.716	1	1565000			3540	8057	1817	1817	4515;4516;4517	4516					0.11708995867752492
AVYQARPQLHK	11	Unmodified	_AVYQARPQLHK_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.5931091308594	3	437.582444	1309.7255	-0.045082	-1.9727E-05	0.12183	5.331E-05	0.076747	3.3583E-05	437.58250480311625	21.984	0.67558	21.984	21.627	22.303	0					41	24	2	0	0	0	0.4112	1	3035	3035		9.7643	2.7272	1	300710			3541	2985	1818	1818	4518	4518					0.08302974819935116
AVYQARPQLHK	11	Unmodified	_AVYQARPQLHK_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.5934143066406	3	437.582444	1309.7255	0.047743	2.0891E-05	-0.0040612	-1.7771E-06	0.043681	1.9114E-05	437.58249835949067	21.984	0.70173	21.884	21.557	22.259	-0.10034					43	25	2	0	0	0	0.40701	1	3056	3056		10.315	3.2781	1	305310			3542	2985	1818	1818	4519	4519					0.08302974819935116
AVYQARPQLHK	11	Unmodified	_AVYQARPQLHK_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.23004150390625	3	437.582444	1309.7255	-0.078128	-3.4187E-05	0.11871	5.1946E-05	0.040584	1.7759E-05	437.5824779456747	21.936	0.82989	21.887	21.604	22.434	-0.049377					46	29	2	0	0	0	0.31673	1	3017	3017		17.863	9.1114	1	361230			3543	2985	1818	1818	4520	4520					0.08302974819935116
AVYSHVIQK	9	Unmodified	_AVYSHVIQK_					0	0	0		ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7637329101562	2	522.795466	1043.57638	0.41884	0.00021897	-0.30012	-0.0001569	0.11873	6.207E-05	522.7951825651218	24.529	0.45636	24.529	24.279	24.736	0					27	14	2	0	0	0	0.21538	1	3752	3752		26.268	12.362	1	126500			3544	3843	1819	1819	4521	4521					0.05633449197171103
AVYSHVIQK	9	Unmodified	_AVYSHVIQK_					0	0	0		ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.31298828125	2	522.795466	1043.57638	0.39461	0.0002063	-0.39388	-0.00020592	0.00073058	3.8194E-07	522.7951149101519	24.662	0.57891	24.606	24.283	24.862	-0.055931					30	19	2	0	0	0	0.30064	1	3782	3782		8.7454	0.15213	1	170970			3545	3843	1819	1819	4522	4522					0.05633449197171103
AVYSHVIQK	9	Unmodified	_AVYSHVIQK_					0	0	0		ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7640991210938	2	522.795466	1043.57638	0.22544	0.00011786	-0.25935	-0.00013559	-0.033916	-1.7731E-05	522.795175327495	24.615	0.43311	24.584	24.4	24.833	-0.031408					25	14	2	0	0	0	0.21026	1	3788	3788		28.495	12.345	1	174490			3546	3843	1819	1819	4523	4523					0.05633449197171103
AVYYKYSHPVF	11	Unmodified	_AVYYKYSHPVF_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3;ENST00000487204.1_1_X:50085140-50094699:+|nuORF;nc|ENSG00000147082|Q8WWL7-2|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.57861328125	3	458.567801	1372.68157	0.022543	1.0337E-05	-0.20622	-9.4565E-05	-0.18367	-8.4227E-05	458.5677095680331	35.615	0.39397	35.702	35.537	35.931	0.08625					30	13	3	0	0	0	0.33146	1	7104	7104		6.6235	2.2173	1	232060			3547	4743	1820	1820	4524	4524					0.010139456029264693
AWCAWDEQR	9	Unmodified	_AWCAWDEQR_					0	0	0			REV__ENST00000567535.5_1_15:75287957-75305364:+|nuORF	REV__ENST00000567535.5_1_15:75287957-75305364:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3054809570312	2	582.74819	1163.48183	0.21358	0.00012446	0.60958	0.00035523	0.82316	0.0004797	582.7483385549966	73.397	0.27698	73.397	73.191	73.468	0					15	9	2	0	0	0	0.25526	1	18722	18722		7.9102	1.5561	1	109120	+		3548	22381	1821	1821	4525	4525					-0.09337432616462138
AWCAWDEQR	9	Unmodified	_AWCAWDEQR_					0	0	0			REV__ENST00000567535.5_1_15:75287957-75305364:+|nuORF	REV__ENST00000567535.5_1_15:75287957-75305364:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3054809570312	2	582.74819	1163.48183	0.15012	8.7482E-05	0.42363	0.00024687	0.57375	0.00033435	582.7482192947807	73.254	0.29627	73.308	73.2	73.496	0.053833					17	10	2	0	0	0	0.25938	1	18707	18707		4.3292	0.38484	1	119760	+		3549	22381	1821	1821	4526	4526					-0.09337432616462138
AWDFLKFF	8	Unmodified	_AWDFLKFF_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7852172851562	2	537.276378	1072.5382	1.1608	0.00062369	0.33423	0.00017957	1.4951	0.00080327	537.2760316709348	56.085	1.7034	56.085	55.732	57.435	0					158	62	5	0	0	0	0.42446	1	13637	13637		14.582	1.0738	1	13115000	+		3550	15035	1822	1822	4527	4527					0.004835632825233915
AWEVAPELF	9	Unmodified	_AWEVAPELF_					0	0	0		ENST00000480305.1_1_1:2493254-2494709:+|nuORF	ENST00000480305.1_1_1:2493254-2494709:+|nuORF	ENST00000480305.1_1_1:2493254-2494709:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8171997070312	2	531.26875	1060.52295	0.17866	9.4918E-05	-0.92514	-0.0004915	-0.74648	-0.00039658	531.2679523166377	80.802	0.5435	80.867	80.628	81.172	0.065094					37	23	2	0	0	0	0.17611	1	21025	21025		34.102	5.6156	1	281050			3551	11005	1823	1823	4528	4528					-0.004893483053592718
AWEVAPELF	9	Unmodified	_AWEVAPELF_					0	0	0		ENST00000480305.1_1_1:2493254-2494709:+|nuORF	ENST00000480305.1_1_1:2493254-2494709:+|nuORF	ENST00000480305.1_1_1:2493254-2494709:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.817138671875	2	531.26875	1060.52295	0.48332	0.00025677	-1.3505	-0.0007175	-0.86722	-0.00046073	531.2678100671336	80.919	0.49384	80.892	80.731	81.225	-0.026825					37	20	2	0	0	0	0.14099	1	21067	21067		42.095	7.9921	1	411520			3552	11005	1823	1823	4529	4529					-0.004893483053592718
AWIKKLPFF	9	Unmodified	_AWIKKLPFF_					0	0	0		nc|ENSG00000148200|Q15406-3|NR6A1;nc|ENSG00000148200|Q15406-5|NR6A1;nc|ENSG00000148200|Q15406-2|NR6A1;nc|ENSG00000148200|Q15406-4|NR6A1;ENSG00000148200|ENST00000487099|NR6A1	nc|ENSG00000148200|Q15406-3|NR6A1	nc|ENSG00000148200|Q15406-3|NR6A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.843017578125	2	575.344595	1148.67464	0.415	0.00023877	0.14628	8.416E-05	0.56128	0.00032293	575.3454592594685	88.398	2.6001	88.487	87.352	89.952	0.089195					247	141	4	0	0	0	0.34374	1	23211	23211		2.3027	0	1	1377600			3553	4796	1824	1824	4530	4530					0.1062467751303302
AWLCLRQDCC	10	Unmodified	_AWLCLRQDCC_					0	0	0			REV__ENST00000164024.4_1_3:48689051-48689879:-|nuORF	REV__ENST00000164024.4_1_3:48689051-48689879:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2225341796875	3	404.177045	1209.5093	-0.54783	-0.00022142	3.164	0.0012788	2.6162	0.0010574	404.5127340964611	12.79	0.2711	12.722	12.548	12.819	-0.067496					11	8	2	0	0	0	0.32112	1	221	221		0.77653	0	1	23613	+		3554	19384	1825	1825	4531	4531					-0.087069886720883
AWRHFTIGKK	10	Unmodified	_AWRHFTIGKK_					0	0	0		nc|ENSG00000175894|Q8WU66-2|TSPEAR;ENSG00000175894|ENST00000323084|TSPEAR	nc|ENSG00000175894|Q8WU66-2|TSPEAR	nc|ENSG00000175894|Q8WU66-2|TSPEAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.5820617675781	3	415.24013	1242.69856	-0.26084	-0.00010831	-0.55498	-0.00023045	-0.81582	-0.00033876	415.2396974154397	23.116	0.5717	23.116	22.791	23.362	0					40	19	3	0	0	0	0.35231	1	3387	3387		7.4771	0	1	147530			3555	6890	1826	1826	4532	4532					0.08691910999391439
AWRKICPL	8	Unmodified	_AWRKICPL_					0	0	0		ENSG00000111181|ENST00000684302|SLC6A12;SLC6A12|p.V232Sfs*17|1|0.34|ENSG00000111181|chr12:200668-200668|C/-|frameshift_variant	ENSG00000111181|ENST00000684302|SLC6A12	ENSG00000111181|ENST00000684302|SLC6A12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2644958496094	2	493.783847	985.553142	0.030824	1.522E-05	1.738	0.00085818	1.7688	0.0008734	493.7849418600274	13.523	0.33277	13.424	13.276	13.608	-0.09929					21	11	3	0	0	0	0.34434	1	489	489		0.79363	0	1	81313			3556	2350	1827	1827	4533	4533					0.05978731878860799
AWSIKTNK	8	Unmodified	_AWSIKTNK_					0	0	0			REV__ENST00000263960.6_1_2:198339073-198339454:+|nuORF;REV__nc|ENSG00000183914|Q9P225-3|DNAH2	REV__nc|ENSG00000183914|Q9P225-3|DNAH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2690124511719	2	474.269084	946.523616	-0.085137	-4.0378E-05	0.68859	0.00032658	0.60345	0.0002862	474.26939456249175	19.169	1.4592	19.169	18.363	19.822	0					105	51	4	0	0	0	0.13814	1	2149	2149		53.833	15.859	1	571610	+		3557	19628;23133	1828	1828	4534	4534					0.04821491134362077
AWSIKTNK	8	Unmodified	_AWSIKTNK_					0	0	0			REV__ENST00000263960.6_1_2:198339073-198339454:+|nuORF;REV__nc|ENSG00000183914|Q9P225-3|DNAH2	REV__nc|ENSG00000183914|Q9P225-3|DNAH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.26910400390625	2	474.269084	946.523616	-0.085137	-4.0378E-05	0.68859	0.00032658	0.60345	0.0002862	474.26939456249175	19.169	1.4592	19.169	18.363	19.822	0					105	51	4	0	0	0	0.29969	1	2198	2198		34.402	2.0962	1	571610	+		3558	19628;23133	1828	1828	4535	4535					0.04821491134362077
AWSIKTNK	8	Unmodified	_AWSIKTNK_					0	0	0			REV__ENST00000263960.6_1_2:198339073-198339454:+|nuORF;REV__nc|ENSG00000183914|Q9P225-3|DNAH2	REV__nc|ENSG00000183914|Q9P225-3|DNAH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.2691345214844	2	474.269084	946.523616	0.11797	5.5951E-05	0.5106	0.00024216	0.62857	0.00029811	474.2694044065404	19.308	1.4233	19.192	18.389	19.812	-0.11592					97	49	4	0	0	0	0.13814	1	2199	2199		53.833	15.859	1	587030	+		3559	19628;23133	1828	1828	4536	4536					0.04821491134362077
AWSIKTNK	8	Unmodified	_AWSIKTNK_					0	0	0			REV__ENST00000263960.6_1_2:198339073-198339454:+|nuORF;REV__nc|ENSG00000183914|Q9P225-3|DNAH2	REV__nc|ENSG00000183914|Q9P225-3|DNAH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.2691345214844	2	474.269084	946.523616	0.11797	5.5951E-05	0.5106	0.00024216	0.62857	0.00029811	474.2694044065404	19.308	1.4233	19.192	18.389	19.812	-0.11592					97	49	4	0	0	0	0.29969	1	2263	2263		34.402	15.145	1	587030	+		3560	19628;23133	1828	1828	4537	4537					0.04821491134362077
AWSIKTNK	8	Unmodified	_AWSIKTNK_					0	0	0			REV__ENST00000263960.6_1_2:198339073-198339454:+|nuORF;REV__nc|ENSG00000183914|Q9P225-3|DNAH2	REV__nc|ENSG00000183914|Q9P225-3|DNAH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2690734863281	2	474.269084	946.523616	0.10552	5.0047E-05	0.54813	0.00025996	0.65366	0.00031001	474.2693462715393	19.25	1.4726	19.194	18.405	19.877	-0.055693					108	51	4	0	0	0	0.088223	1	2183	2183		62.573	28.171	1	570910	+		3561	19628;23133	1828	1828	4538	4538					0.04821491134362077
AWSIKTNK	8	Unmodified	_AWSIKTNK_					0	0	0			REV__ENST00000263960.6_1_2:198339073-198339454:+|nuORF;REV__nc|ENSG00000183914|Q9P225-3|DNAH2	REV__nc|ENSG00000183914|Q9P225-3|DNAH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.26904296875	2	474.269084	946.523616	0.10552	5.0047E-05	0.54813	0.00025996	0.65366	0.00031001	474.2693462715393	19.25	1.4726	19.194	18.405	19.877	-0.055693					108	51	4	0	0	0	0.33988	1	2236	2236		18.146	4.2403	1	570910	+		3562	19628;23133	1828	1828	4539	4539					0.04821491134362077
AWTEPVSI	8	Unmodified	_AWTEPVSI_					0	0	0			REV__ENSG00000153060|ENST00000283025|TEKT5	REV__ENSG00000153060|ENST00000283025|TEKT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.9327697753906	2	451.734543	901.454533	0.29782	0.00013454	0.056845	2.5679E-05	0.35467	0.00016022	451.73463606344166	89.097	0.76337	89.097	88.584	89.348	0					54	32	2	0	0	0	0.32886	1	23553	23553		21.747	3.6117	1	150800	+		3563	16609	1829	1829	4540	4540					-0.0001359288519324764
AWWCLPVF	8	Unmodified	_AWWCLPVF_					0	0	0		AluJb_dup114451|chr19:8372522-8372810:+|1.020281707639801|0.2458616329103154|2.05|532.0|10|3|sense	AluJb_dup114451|chr19:8372522-8372810:+|1.020281707639801|0.2458616329103154|2.05|532.0|10|3|sense	AluJb_dup114451|chr19:8372522-8372810:+|1.020281707639801|0.2458616329103154|2.05|532.0|10|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2526550292969	2	511.251849	1020.48914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.337	1	92.426	91.926	92.926	0.089195								0	0	0	0.35779	1	24549	24549		11.114	0.29054	1				3564	29	1830	1830	4541	4541					-0.020280482780776765
AWWCQWVDERK	11	Unmodified	_AWWCQWVDERK_					0	0	0			REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.28070068359375	3	502.903078	1505.6874	0.38861	0.00019543	-1.0263	-0.00051612	-0.63768	-0.00032069	502.9028394200223	37.803	0.60123	37.893	37.581	38.183	0.090881					62	21	4	0	0	0	0.33303	1	7768	7768		2.4348	2.0265	1	471210	+		3565	23151	1831	1831	4542	4542					-0.04521279157029312
AYAAAAAAAI	10	Unmodified	_AYAAAAAAAI_					0	0	0			REV__ENSG00000205832|ENST00000444310|C16orf96	REV__ENSG00000205832|ENST00000444310|C16orf96	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.90606689453125	2	432.23471	862.454868	-0.0030552	-1.3206E-06	-0.86976	-0.00037594	-0.87281	-0.00037726	432.2341356889451	40.987	0.17939	41.077	40.927	41.106	0.090252					9	6	2	0	0	0	0.30586	1	8791	8791		4.3292	0	1	74388	+		3566	19002	1832	1832	4543	4543					0.01813826834631982
AYAASPTSITV	11	Unmodified	_AYAASPTSITV_					0	0	0		nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.345703125	2	540.782222	1079.54989	0.6293	0.00034031	1.7851	0.00096536	2.4144	0.0013057	540.7831769246651	42.127	0.20213	42.212	42.093	42.295	0.085197					9	6	2	0	0	0	0.32667	1	9149	9149		13.042	2.2185	1	94017			3567	857	1833	1833	4544	4544					0.013297155151803963
AYADVQAVL	9	Unmodified	_AYADVQAVL_					0	0	0		nc|ENSG00000004866|Q9NRC1|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000489293.5_1_7:116770554-116838385:+|nuORF	nc|ENSG00000004866|Q9NRC1|ST7	nc|ENSG00000004866|Q9NRC1|ST7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.2525329589844	2	475.2531	948.491647	0.2217	0.00010536	-0.33391	-0.00015869	-0.11221	-5.3327E-05	475.2528080846788	60.454	0.61784	60.454	60.202	60.819	0					41	22	2	0	0	0	0.020233	2	14776	14776;14827		63.961	33.324	1	1344300			3568	318	1834	1834	4545;4546	4545					0.01534078660574778
AYADVQAVL	9	Unmodified	_AYADVQAVL_					0	0	0		nc|ENSG00000004866|Q9NRC1|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000489293.5_1_7:116770554-116838385:+|nuORF	nc|ENSG00000004866|Q9NRC1|ST7	nc|ENSG00000004866|Q9NRC1|ST7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.25286865234375	2	475.2531	948.491647	0.20822	9.8957E-05	-0.29552	-0.00014044	-0.087296	-4.1488E-05	475.2528834935609	60.338	0.65548	60.433	60.211	60.866	0.095093					42	23	2	0	0	0	0.020233	2	14734	14734;14783		63.961	34.879	1	1200500			3569	318	1834	1834	4547;4548	4547					0.01534078660574778
AYADVQAVL	9	Unmodified	_AYADVQAVL_					0	0	0		nc|ENSG00000004866|Q9NRC1|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000489293.5_1_7:116770554-116838385:+|nuORF	nc|ENSG00000004866|Q9NRC1|ST7	nc|ENSG00000004866|Q9NRC1|ST7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.25311279296875	2	475.2531	948.491647	0.3729	0.00017722	-0.25561	-0.00012148	0.11728	5.574E-05	475.25271910393644	60.42	0.64445	60.408	60.137	60.782	-0.011486					51	23	3	0	0	0	0.014206	1	14777	14777		72.968	36.841	1	960800			3570	318	1834	1834	4549	4549					0.01534078660574778
AYAENIALL	9	Unmodified	_AYAENIALL_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2689208984375	2	489.26875	976.522947	0.31437	0.00015381	0.12747	6.2368E-05	0.44184	0.00021618	489.26875130165826	67.727	1.2612	67.727	67.279	68.541	0					112	45	5	0	0	0	3.5085E-07	4	17046	16961;17002;17046;17097		166.45	70.163	1	5459400			3571	7865	1835	1835	4550;4551;4552;4553	4552					0.033746516946507654
AYAENIALL	9	Unmodified	_AYAENIALL_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2688903808594	2	489.26875	976.522947	0.44621	0.00021832	-0.061953	-3.0312E-05	0.38425	0.000188	489.26865777254164	67.62	1.0394	67.698	67.296	68.336	0.078049					103	36	5	0	0	0	2.8439E-05	3	16966	16966;17010;17059		152.41	63.509	1	5460600			3572	7865	1835	1835	4554;4555;4556	4554					0.033746516946507654
AYAENIALL	9	Unmodified	_AYAENIALL_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2689514160156	2	489.26875	976.522947	0.2598	0.00012711	0.22883	0.00011196	0.48862	0.00023907	489.2687829006577	67.722	1.3457	67.705	67.115	68.461	-0.016296					115	46	6	0	0	0	3.5085E-07	4	17003	16956;17003;17046;17098		166.45	70.163	1	5604500			3573	7865	1835	1835	4557;4558;4559;4560	4558					0.033746516946507654
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2980346679688	2	525.297507	1048.58046	0.67412	0.00035412	-0.058024	-3.048E-05	0.6161	0.00032364	525.2974647260962	51.262	1.4045	51.262	50.978	52.382	0					134	51	5	0	0	0	4.3828E-07	4	11942	11896;11901;11942;11993		163.04	84.887	1	11814000			3574	5256	1836	1836	4561;4562;4563;4564	4563					0.05811493900228015
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2969360351562	2	525.297507	1048.58046	0.5191	0.00027268	-0.035757	-1.8783E-05	0.48334	0.0002539	525.2974747273382	51.235	1.3221	51.281	51.011	52.333	0.046577					136	48	5	0	0	0	4.3881E-05	3	11897	11897;11942;11993		149.91	81.833	1	11539000			3575	5256	1836	1836	4565;4566;4567	4565					0.05811493900228015
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2979125976562	2	525.297507	1048.58046	0.59126	0.00031059	0.065111	3.4203E-05	0.65637	0.00034479	525.29751021121	51.324	1.3791	51.334	51.042	52.421	0.0095634					138	51	4	0	0	0	4.3881E-05	3	11932	11911;11932;11976		149.91	81.833	1	10949000			3576	5256	1836	1836	4568;4569;4570	4569					0.05811493900228015
AYAIITALL	9	Unmodified	_AYAIITALL_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7918395996094	2	474.791861	947.569169	0.32055	0.00015219	-0.63896	-0.00030337	-0.31841	-0.00015118	474.79162600568793	88.739	1.6394	88.828	88.123	89.762	0.089195					193	84	4	0	0	0	2.3185E-05	6	23456	23389;23411;23456;23504;23540;23550		153.26	38.318	1	3829500			3577	7251	1837	1837	4571;4572;4573;4574;4575;4576	4573					0.09328716596746744
AYAIITALL	9	Unmodified	_AYAIITALL_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.79180908203125	2	474.791861	947.569169	0.32587	0.00015472	-0.57327	-0.00027218	-0.24739	-0.00011746	474.7916034564616	88.839	1.3203	88.838	88.338	89.659	-0.00080872					153	65	4	0	0	0	2.3185E-05	6	23444	23423;23444;23492;23547;23568;23590		153.26	38.318	1	2686200			3578	7251	1837	1837	4577;4578;4579;4580;4581;4582	4578					0.09328716596746744
AYAIITALL	9	Unmodified	_AYAIITALL_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	474.791861	947.569169	0.25476	0.00012096	-0.45148	-0.00021436	-0.19672	-9.34E-05	474.79166155931586	88.862	1.3776	88.862	88.469	89.847	0	0.019351	4.928E-05	NaN	153.26	185	75	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3106200			3579	7251	1837	1837							0.09328716596746744
AYALLLQHL	9	Unmodified	_AYALLLQHL_					0	0	0		nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6;ENST00000489483.5_1_3:48670389-48671049:-|nuORF;ENST00000482282.5_1_3:48670520-48671236:-|nuORF;nc|ENSG00000225697|Q9BXS9-5|SLC26A6	nc|ENSG00000225697|Q9BXS9-6|SLC26A6	nc|ENSG00000225697|Q9BXS9-6|SLC26A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.3247680664062	2	521.30821	1040.60187	0.71239	0.00037137	1.1663	0.00060802	1.8787	0.0009794	521.3090470348544	65.79	0.69521	65.79	65.488	66.183	0					52	24	3	0	0	0	0.048175	2	16486	16437;16486		53.576	21.459	1	1013100			3580	8447	1838	1838	4583;4584	4584					0.08318923719616578
AYALLLQHL	9	Unmodified	_AYALLLQHL_					0	0	0		nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6;ENST00000489483.5_1_3:48670389-48671049:-|nuORF;ENST00000482282.5_1_3:48670520-48671236:-|nuORF;nc|ENSG00000225697|Q9BXS9-5|SLC26A6	nc|ENSG00000225697|Q9BXS9-6|SLC26A6	nc|ENSG00000225697|Q9BXS9-6|SLC26A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.3246459960938	2	521.30821	1040.60187	0.50856	0.00026512	1.852	0.00096544	2.3605	0.0012306	521.3091918614476	65.672	0.53532	65.761	65.604	66.139	0.088882					34	19	2	0	0	0	0.048175	1	16399	16399		53.576	33.122	1	1085500			3581	8447	1838	1838	4585	4585					0.08318923719616578
AYALLLQHL	9	Unmodified	_AYALLLQHL_					0	0	0		nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6;ENST00000489483.5_1_3:48670389-48671049:-|nuORF;ENST00000482282.5_1_3:48670520-48671236:-|nuORF;nc|ENSG00000225697|Q9BXS9-5|SLC26A6	nc|ENSG00000225697|Q9BXS9-6|SLC26A6	nc|ENSG00000225697|Q9BXS9-6|SLC26A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.3245239257812	2	521.30821	1040.60187	0.55501	0.00028933	1.555	0.00081062	2.11	0.0011	521.3091550139209	65.769	0.55907	65.758	65.558	66.117	-0.011337					36	19	2	0	0	0	0.029841	3	16475	16384;16430;16475		60.39	32.072	1	1091800			3582	8447	1838	1838	4586;4587;4588	4588					0.08318923719616578
AYALLSHFL	9	Unmodified	_AYALLSHFL_					0	0	0		nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3182983398438	2	517.78711	1033.55967	0.47367	0.00024526	-4.4498	-0.002304	-3.9761	-0.0020588	517.7852163633668	72.974	0.70711	72.974	72.456	73.163	0					32	25	2	0	0	0	0.11486	1	18545	18545		48.346	19.264	1	117750			3583	5243	1839	1839	4589	4589					0.04422948311230357
AYALLSHFL	9	Unmodified	_AYALLSHFL_					0	0	0		nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3182373046875	2	517.78711	1033.55967	0.40042	0.00020733	-0.77281	-0.00040015	-0.37239	-0.00019282	517.7868693067196	72.64	0.33342	72.694	72.51	72.843	0.053833					16	11	2	0	0	0	0.10111	1	18533	18533		50.855	18.069	1	165830			3584	5243	1839	1839	4590	4590					0.04422948311230357
AYANIISQF	9	Unmodified	_AYANIISQF_					0	0	0		ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2;nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;SLC47A2|p.F397Lfs*11|1|0.22|ENSG00000180638|chr17:19703103-19703103|A/-|frameshift_variant	ENSG00000180638|ENST00000433844|SLC47A2	ENSG00000180638|ENST00000433844|SLC47A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7675170898438	2	513.766374	1025.5182	0.34517	0.00017734	0.13273	6.8192E-05	0.4779	0.00024553	513.7671524340753	70.396	2.0498	70.396	69.999	72.048	0					192	73	5	0	0	0	2.6185000000000004E-25	6	17863	17766;17814;17863;17909;17960;18012		249.29	123.76	1	37948000			3585	7195	1840	1840	4591;4592;4593;4594;4595;4596	4593					0.0064576755189591495
AYANIISQF	9	Unmodified	_AYANIISQF_					0	0	0		ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2;nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;SLC47A2|p.F397Lfs*11|1|0.22|ENSG00000180638|chr17:19703103-19703103|A/-|frameshift_variant	ENSG00000180638|ENST00000433844|SLC47A2	ENSG00000180638|ENST00000433844|SLC47A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7847290039062	2	513.766374	1025.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.208	1	79.208	78.708	79.708	0								0	0	0	0.19013	1	20530	20530		25.399	6.1423	1				3586	7195	1840	1840	4597	4597					0.0064576755189591495
AYANIISQF	9	Unmodified	_AYANIISQF_					0	0	0		ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2;nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;SLC47A2|p.F397Lfs*11|1|0.22|ENSG00000180638|chr17:19703103-19703103|A/-|frameshift_variant	ENSG00000180638|ENST00000433844|SLC47A2	ENSG00000180638|ENST00000433844|SLC47A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7849731445312	2	513.766374	1025.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.529	1	79.529	79.029	80.029	0								0	0	0	0.21009	1	20627	20627		19.257	5.3509	1				3587	7195	1840	1840	4598	4598					0.0064576755189591495
AYANIISQF	9	Unmodified	_AYANIISQF_					0	0	0		ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2;nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;SLC47A2|p.F397Lfs*11|1|0.22|ENSG00000180638|chr17:19703103-19703103|A/-|frameshift_variant	ENSG00000180638|ENST00000433844|SLC47A2	ENSG00000180638|ENST00000433844|SLC47A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7675170898438	2	513.766374	1025.5182	0.27482	0.0001412	0.19338	9.9354E-05	0.46821	0.00024055	513.7671941838221	70.356	1.9377	70.416	70.016	71.954	0.060783					191	69	5	0	0	0	2.6185000000000004E-25	6	17806	17758;17806;17849;17900;17943;17995		249.29	123.76	1	37591000			3588	7195	1840	1840	4599;4600;4601;4602;4603;4604	4600					0.0064576755189591495
AYANIISQF	9	Unmodified	_AYANIISQF_					0	0	0		ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2;nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;SLC47A2|p.F397Lfs*11|1|0.22|ENSG00000180638|chr17:19703103-19703103|A/-|frameshift_variant	ENSG00000180638|ENST00000433844|SLC47A2	ENSG00000180638|ENST00000433844|SLC47A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7671508789062	2	513.766374	1025.5182	0.2631	0.00013517	0.2399	0.00012325	0.503	0.00025842	513.7671751359742	70.444	1.4939	70.419	70.015	71.509	-0.024872					174	53	5	0	0	0	2.6185000000000004E-25	6	17809	17766;17809;17851;17895;17947;18000		249.29	135.09	1	41240000			3589	7195	1840	1840	4605;4606;4607;4608;4609;4610	4606					0.0064576755189591495
AYANIISQF	9	Unmodified	_AYANIISQF_					0	0	0		ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2;nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;SLC47A2|p.F397Lfs*11|1|0.22|ENSG00000180638|chr17:19703103-19703103|A/-|frameshift_variant	ENSG00000180638|ENST00000433844|SLC47A2	ENSG00000180638|ENST00000433844|SLC47A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.78466796875	2	513.766374	1025.5182	0.42676	0.00021926	-1.9752	-0.0010148	-1.5485	-0.00079555	514.2653776262201	79.268	0.22012	79.239	79.128	79.348	-0.028931					13	8	2	0	0	0	0.14076	1	20538	20538		32.305	9.5692	1	84797			3590	7195	1840	1840	4611	4611					0.0064576755189591495
AYANLQYPS	9	Unmodified	_AYANLQYPS_					0	0	0			REV__nc|ENSG00000124772|Q9HCH3-2|CPNE5	REV__nc|ENSG00000124772|Q9HCH3-2|CPNE5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2581787109375	2	513.748182	1025.48181	0.19635	0.00010088	3.4229	0.0017585	3.6192	0.0018594	513.7509085523093	73.499	0.84026	73.47	73.042	73.882	-0.029305					46	30	3	0	0	0	0.21905	1	18745	18745		23.148	1.4018	1	289390	+		3591	15249	1841	1841	4612	4612					-0.02991109344816323
AYAPPPHVI	9	Unmodified	_AYAPPPHVI_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7662048339844	2	482.766178	963.517802	0.098799	4.7697E-05	0.70954	0.00034254	0.80834	0.00039024	482.7662830529974	40.873	1.1373	40.873	40.334	41.471	0					116	41	4	0	0	0	0.017826	3	8816	8816;8864;8915		67.413	47.974	1	2189800			3592	3365	1842	1842	4613;4614;4615	4613					0.03458392622712836
AYAPPPHVI	9	Unmodified	_AYAPPPHVI_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7662048339844	2	482.766178	963.517802	0.32381	0.00015632	0.25009	0.00012074	0.5739	0.00027706	482.7661264650825	40.774	0.98346	40.866	40.448	41.431	0.09267					120	36	4	0	0	0	0.11229	3	8769	8769;8821;8845		36.466	28.173	1	2316700			3593	3365	1842	1842	4616;4617;4618	4616					0.03458392622712836
AYAPPPHVI	9	Unmodified	_AYAPPPHVI_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7662658691406	2	482.766178	963.517802	0.17507	8.4519E-05	0.51157	0.00024697	0.68664	0.00033149	482.7662205576518	40.687	0.94719	40.786	40.453	41.4	0.099407					105	34	4	0	0	0	0.041522	2	8744	8744;8794		56.048	35.595	1	2260800			3594	3365	1842	1842	4619;4620	4619					0.03458392622712836
AYAQLAYLVF	10	Unmodified	_AYAQLAYLVF_					0	0	0		nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-5|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENST00000511337.5_1_4:88973244-88983097:+|nuORF	nc|ENSG00000118762|Q13563-4|PKD2	nc|ENSG00000118762|Q13563-4|PKD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.8134765625	2	579.813325	1157.6121	0.32852	0.00019048	0.058489	3.3912E-05	0.387	0.00022439	579.8133124512632	90.119	1.0632	90.119	89.776	90.839	0					270	87	5	0	0	0	1.4019E-08	6	23880	23803;23843;23880;23920;23962;24006		162.95	98.715	1	3081700			3595	2843	1843	1843	4621;4622;4623;4624;4625;4626	4623					0.039594866541847296
AYAQLAYLVF	10	Unmodified	_AYAQLAYLVF_					0	0	0		nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-5|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENST00000511337.5_1_4:88973244-88983097:+|nuORF	nc|ENSG00000118762|Q13563-4|PKD2	nc|ENSG00000118762|Q13563-4|PKD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.8134765625	2	579.813325	1157.6121	0.36042	0.00020898	0.041927	2.431E-05	0.40235	0.00023329	579.813289124164	89.969	1.0297	90.059	89.764	90.793	0.090675					259	80	5	0	0	0	3.9631E-06	5	23831	23795;23831;23872;23910;23949		154.46	96.992	1	4249100			3596	2843	1843	1843	4627;4628;4629;4630;4631	4628					0.039594866541847296
AYAQLAYLVF	10	Unmodified	_AYAQLAYLVF_					0	0	0		nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-5|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENST00000511337.5_1_4:88973244-88983097:+|nuORF	nc|ENSG00000118762|Q13563-4|PKD2	nc|ENSG00000118762|Q13563-4|PKD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8134155273438	2	579.813325	1157.6121	0.4066	0.00023575	-0.041704	-2.418E-05	0.3649	0.00021157	579.8132384524752	90.09	1.1175	90.09	89.765	90.883	0.00039673					273	89	5	0	0	0	1.4019E-08	7	23865	23830;23865;23907;23946;23988;24032;24091		162.95	98.715	1	4570400			3597	2843	1843	1843	4632;4633;4634;4635;4636;4637;4638	4633					0.039594866541847296
AYARLRLEQ	9	Unmodified	_AYARLRLEQ_					0	0	0			REV__ENST00000564651.5_1_16:57496627-57504171:+|nuORF	REV__ENST00000564651.5_1_16:57496627-57504171:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3292846679688	2	560.317097	1118.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.067	1	39.067	38.567	39.567	0								0	0	0	0.22065	1	8206	8206		15.847	2.8047	1		+		3598	14344	1844	1844	4639	4639					0.06507638974449037
AYATHPFKF	9	Unmodified	_AYATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.278076171875	2	541.276909	1080.53927	0.35418	0.00019171	1.2992	0.0007032	1.6533	0.00089491	541.2775861880992	39.952	1.0171	39.952	39.644	40.662	0					72	36	3	0	0	0	0.00070271	2	8465	8465;8516		126.57	95.929	1	992740			3599	2403	1845	1845	4640;4641	4640					0.0022177765142714634
AYATHPFKF	9	Unmodified	_AYATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.278564453125	2	541.276909	1080.53927	0.56523	0.00030594	2.7695	0.0014991	3.3347	0.001805	541.2776100842002	39.681	1.0596	39.773	39.442	40.502	0.09267					98	37	4	0	0	0	0.0010463	2	8387	8387;8456		122.18	66.002	1	1024200			3600	2403	1845	1845	4642;4643	4642					0.0022177765142714634
AYATHPFKF	9	Unmodified	_AYATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-5|NCOA7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2781982421875	2	541.276909	1080.53927	0.55914	0.00030265	2.2559	0.0012211	2.815	0.0015237	541.2773632361923	39.656	1.0814	39.755	39.424	40.505	0.099407					95	38	4	0	0	0	0.0019475	2	8373	8373;8418		110.67	68.719	1	1227000			3601	2403	1845	1845	4644;4645	4644					0.0022177765142714634
AYDDKIYYF	9	Unmodified	_AYDDKIYYF_					0	0	0		nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A	nc|ENSG00000138623|O75326-2|SEMA7A	nc|ENSG00000138623|O75326-2|SEMA7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.2767333984375	2	599.276772	1196.53899	0.53388	0.00031994	-0.78682	-0.00047152	-0.25293	-0.00015158	599.2761305875898	58.707	0.61267	58.707	58.468	59.081	0					42	20	3	0	0	0	0.037019	1	14290	14290		57.722	21.595	1	388590			3602	4167	1846	1846	4646	4646					-0.0514168685911045
AYDDKIYYF	9	Unmodified	_AYDDKIYYF_					0	0	0		nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A	nc|ENSG00000138623|O75326-2|SEMA7A	nc|ENSG00000138623|O75326-2|SEMA7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.2778930664062	2	599.276772	1196.53899	0.56089	0.00033613	-0.68862	-0.00041268	-0.12774	-7.6551E-05	599.2764079352307	58.591	0.56522	58.683	58.418	58.983	0.091305					44	19	3	0	0	0	0.13296	1	14203	14203		33.445	10.709	1	347580			3603	4167	1846	1846	4647	4647					-0.0514168685911045
AYDDKIYYF	9	Unmodified	_AYDDKIYYF_					0	0	0		nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A	nc|ENSG00000138623|O75326-2|SEMA7A	nc|ENSG00000138623|O75326-2|SEMA7A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	599.276772	1196.53899	0.47309	0.00028351	-0.13551	-8.1209E-05	0.33758	0.0002023	599.2765499249317	58.836	0.50147	58.822	58.583	59.084	-0.014267	0.08457	0.00035833	NaN	57.722	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443920			3604	4167	1846	1846							-0.0514168685911045
AYDEVLWGF	9	Unmodified	_AYDEVLWGF_					0	0	0		CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant	CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant	CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3128051757812	2	550.258382	1098.50221	0.39452	0.00021709	3.3877	0.0018641	3.7822	0.0020812	550.2603645637579	76.666	0.32719	76.666	76.53	76.858	0					14	11	2	0	0	0	0.24739	1	19754	19754		13.508	0.97634	1	92699			3605	85	1847	1847	4648	4648					-0.04309938684991721
AYDKLEIR	8	Unmodified	_AYDKLEIR_					0	0	0			REV__ENST00000423777.6_1_19:50436657-50436897:+|nuORF	REV__ENST00000423777.6_1_19:50436657-50436897:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2635803222656	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.819	1	65.819	65.319	66.319	0								0	0	0	0.33941	1	16440	16440		19.439	1.304	1		+		3606	20885	1848	1848	4649	4649					0.041734564432204024
AYDLLPTAP	9	Unmodified	_AYDLLPTAP_					0	0	0			REV__nc|ENSG00000131473|P53396-3|ACLY	REV__nc|ENSG00000131473|P53396-3|ACLY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.77972412109375	2	480.755475	959.496398	0.25304	0.00012165	0.30984	0.00014896	0.56288	0.00027061	480.7556113425332	67.92	0.66397	67.904	67.562	68.226	-0.016296					31	23	2	0	0	0	0.21905	1	17001	17001		23.148	2.6948	1	197840	+		3607	15517	1849	1849	4650	4650					0.015029628033289555
AYDLLPTAP	9	Unmodified	_AYDLLPTAP_					0	0	0			REV__nc|ENSG00000131473|P53396-3|ACLY	REV__nc|ENSG00000131473|P53396-3|ACLY	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	480.755475	959.496398	0.19164	9.2134E-05	-0.037568	-1.8061E-05	0.15408	7.4072E-05	480.7554409672159	67.893	0.50433	67.893	67.673	68.178	0	-0.016897	-0.00011599	NaN	23.148	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181880	+		3608	15517	1849	1849							0.015029628033289555
AYDQLKIQV	9	Unmodified	_AYDQLKIQV_					0	0	0		nc|ENSG00000204084|P32019-4|INPP5B;nc|ENSG00000204084|P32019-3|INPP5B;INPP5B|p.S858Ifs*17|1|0.05|ENSG00000204084|chr1:37866513-37866514|-/TATTGTAT|frameshift_variant;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B	nc|ENSG00000204084|P32019-4|INPP5B	nc|ENSG00000204084|P32019-4|INPP5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2901611328125	2	539.300581	1076.58661	0.46625	0.00025145	-0.37829	-0.00020401	0.08796	4.7437E-05	539.3005711628571	52.037	1.1971	52.037	51.297	52.494	0					105	43	3	0	0	0	0.21303	1	12270	12270		21.747	0	1	1370000			3609	12906	1850	1850	4651	4651					0.05138012131760661
AYDTNEPEW	9	Unmodified	_AYDTNEPEW_					0	0	0			REV__nc|ENSG00000182901|P49802-5|RGS7	REV__nc|ENSG00000182901|P49802-5|RGS7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3345336914062	2	562.730186	1123.44582	0.30813	0.0001734	-0.26757	-0.00015057	0.040563	2.2826E-05	562.7299416953919	26.39	0.51178	26.368	26.073	26.584	-0.022238					30	17	2	0	0	0	0.25938	1	4372	4372		4.3292	0.73274	1	89513	+		3610	23126	1851	1851	4652	4652					-0.11096611312314053
AYDTVRWEF	9	Unmodified	_AYDTVRWEF_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000482088.5_1_9:140007335-140007673:-|nuORF;ENST00000460830.1_1_9:140006993-140007673:-|nuORF;ENST00000473532.5_1_9:140005202-140008344:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.7800903320312	2	593.780013	1185.54547	0.37564	0.00022305	-0.10642	-6.3192E-05	0.26922	0.00015986	593.7798522526276	61.948	0.84952	61.948	61.652	62.501	0					88	31	5	0	0	0	6.549E-06	3	15265	15219;15265;15319		155.95	103.69	1	2728800			3611	6954	1852	1852	4653;4654;4655	4654					-0.039877489077071004
AYDTVRWEF	9	Unmodified	_AYDTVRWEF_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000482088.5_1_9:140007335-140007673:-|nuORF;ENST00000460830.1_1_9:140006993-140007673:-|nuORF;ENST00000473532.5_1_9:140005202-140008344:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.780029296875	2	593.780013	1185.54547	0.10061	5.974E-05	0.14951	8.8778E-05	0.25012	0.00014852	593.7801217457542	61.888	0.84489	61.985	61.701	62.546	0.096989					88	30	4	0	0	0	0.00024732	3	15248	15200;15248;15305		132.38	92.805	1	2218100			3612	6954	1852	1852	4656;4657;4658	4657					-0.039877489077071004
AYDTVRWEF	9	Unmodified	_AYDTVRWEF_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000482088.5_1_9:140007335-140007673:-|nuORF;ENST00000460830.1_1_9:140006993-140007673:-|nuORF;ENST00000473532.5_1_9:140005202-140008344:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7800903320312	2	593.780013	1185.54547	0.21114	0.00012537	0.082701	4.9106E-05	0.29384	0.00017448	593.7800152616651	61.972	0.90102	61.963	61.613	62.514	-0.0085564					90	32	4	0	0	0	0.00024732	3	15261	15214;15261;15304		132.38	96.253	1	2267800			3613	6954	1852	1852	4659;4660;4661	4660					-0.039877489077071004
AYEHKFYEI	9	Unmodified	_AYEHKFYEI_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.2903442382812	2	600.290214	1198.56587	0.71376	0.00042846	0.19921	0.00011958	0.91296	0.00054804	600.2903182607632	40.028	0.84558	40.121	39.548	40.394	0.09267					51	29	3	0	0	0	0.010888	1	8480	8480		78.06	45.275	1	475000			3614	1868	1853	1853	4662	4662					-0.025465782478931942
AYEHKFYEI	9	Unmodified	_AYEHKFYEI_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	600.290214	1198.56587	0.61956	0.00037192	0.19955	0.00011979	0.81912	0.00049171	600.2899998654875	40.302	0.58372	40.302	40.05	40.634	0	0.12594	2.4144E-05	NaN	78.06	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	418680			3615	1868	1853	1853							-0.025465782478931942
AYEHKFYEI	9	Unmodified	_AYEHKFYEI_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	600.290214	1198.56587	0.45787	0.00027486	0.1604	9.6289E-05	0.61828	0.00037114	600.2899425209732	40.005	0.5534	40.105	39.844	40.397	0.099407	-0.070996	-2.2859E-05	NaN	78.06	47	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	562980			3616	1868	1853	1853							-0.025465782478931942
AYEIIDQFF	9	Unmodified	_AYEIIDQFF_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.279541015625	2	573.279315	1144.54408	0.32848	0.00018831	2.0722	0.001188	2.4007	0.0013763	573.2794553815111	89.323	0.93832	89.323	88.863	89.802	0					125	52	3	0	0	0	0.058995	2	23628	23628;23673		49.554	31.408	1	385530			3617	7613	1854	1854	4663;4664	4663					-0.022413829964762044
AYEIIDQFF	9	Unmodified	_AYEIIDQFF_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.2799072265625	2	573.279315	1144.54408	0.42702	0.0002448	1.6361	0.00093796	2.0632	0.0011828	573.2794513098637	89.213	0.79337	89.304	88.97	89.764	0.090561					106	46	3	0	0	0	0.048637	3	23587	23545;23587;23630		53.404	35.258	1	336020			3618	7613	1854	1854	4665;4666;4667	4666					-0.022413829964762044
AYEIIDQFF	9	Unmodified	_AYEIIDQFF_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.279541015625	2	573.279315	1144.54408	0.34245	0.00019632	1.3989	0.00080197	1.7414	0.00099829	573.2793912028891	89.342	0.88151	89.341	88.93	89.811	-0.00080872					116	54	3	0	0	0	0.069258	1	23624	23624		45.74	30.902	1	472660			3619	7613	1854	1854	4668	4668					-0.022413829964762044
AYELTQYYF	9	Unmodified	_AYELTQYYF_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.27685546875	2	599.276772	1196.53899	0.57477	0.00034444	-0.20347	-0.00012194	0.3713	0.00022251	599.2765898298941	75.14	0.77798	75.14	74.871	75.649	0					79	27	4	0	0	0	0.0013683	2	19269	19269;19318		118.07	56.711	1	1206000			3620	5763	1855	1855	4669;4670	4669					-0.05141686859087713
AYELTQYYF	9	Unmodified	_AYELTQYYF_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.27685546875	2	599.276772	1196.53899	0.54151	0.00032452	-0.24087	-0.00014435	0.30064	0.00018017	599.276581954245	75.112	0.89143	75.165	74.89	75.781	0.052368					84	32	4	0	0	0	0.0028626	1	19308	19308		103.35	55.008	1	1100700			3621	5763	1855	1855	4671	4671					-0.05141686859087713
AYELTQYYF	9	Unmodified	_AYELTQYYF_					0	0	0		nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.2769775390625	2	599.276772	1196.53899	0.6279	0.00037629	-0.41904	-0.00025112	0.20886	0.00012516	599.276538685751	75.221	0.7426	75.19	74.922	75.665	-0.031487					77	27	3	0	0	0	0.00045155	2	19279	19279;19333		129.77	58.639	1	1197600			3622	5763	1855	1855	4672;4673	4672					-0.05141686859087713
AYEVLCYV	8	Unmodified	_AYEVLCYV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.3000183105469	2	480.230779	958.447005	0.23345	0.00011211	-0.056278	-2.7027E-05	0.17717	8.5081E-05	480.2307571650186	58.703	0.71508	58.703	58.5	59.215	0					34	24	2	0	0	0	0.26518	1	14285	14285		34.187	9.5134	1	141670			3623	7248	1856	1856	4674	4674					-0.03388068477113393
AYFDKIEHSTF	11	Unmodified	_AYFDKIEHSTF_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7923889160156	3	453.218949	1356.63502	0.62827	0.00028474	0.32401	0.00014685	0.95227	0.00043159	453.2186509055316	50.622	0.30472	50.622	50.433	50.738	0					18	10	2	0	0	0	0.3232	1	11750	11750		20.871	3.8226	1	305620			3624	1183	1857	1857	4675	4675					-0.029035390190074395
AYFDKIEHSTF	11	Unmodified	_AYFDKIEHSTF_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7922668457031	3	453.218949	1356.63502	0.74828	0.00033913	0.59348	0.00026898	1.3418	0.00060811	453.2191305293483	50.572	0.35941	50.617	50.433	50.792	0.044891					22	12	2	0	0	0	0.32296	1	11737	11737		22.109	8.5902	1	357290			3625	1183	1857	1857	4676	4676					-0.029035390190074395
AYFDKIEHSTF	11	Unmodified	_AYFDKIEHSTF_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.79229736328125	3	453.218949	1356.63502	0.70498	0.00031951	0.28429	0.00012885	0.98927	0.00044836	453.2187938461551	50.665	0.40344	50.685	50.495	50.898	0.020691					33	14	3	0	0	0	0.32466	1	11740	11740		14.838	1.982	1	377710			3626	1183	1857	1857	4677	4677					-0.029035390190074395
AYFDVPELI	9	Unmodified	_AYFDVPELI_					0	0	0		nc|ENSG00000115295|Q8N3C7-4|CLIP4;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4	nc|ENSG00000115295|Q8N3C7-4|CLIP4	nc|ENSG00000115295|Q8N3C7-4|CLIP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7765502929688	2	533.776408	1065.53826	0.40008	0.00021355	2.7857	0.001487	3.1858	0.0017005	533.776356057805	87.497	1.609	87.584	86.579	88.188	0.08709					169	77	4	0	0	0	0.034444	3	23090	23057;23090;23101		58.679	31.795	1	1268000			3627	12661	1858	1858	4678;4679;4680	4679					0.008115184918551677
AYFDVPELI	9	Unmodified	_AYFDVPELI_					0	0	0		nc|ENSG00000115295|Q8N3C7-4|CLIP4;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4	nc|ENSG00000115295|Q8N3C7-4|CLIP4	nc|ENSG00000115295|Q8N3C7-4|CLIP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7764282226562	2	533.776408	1065.53826	0.56909	0.00030376	1.6845	0.00089916	2.2536	0.0012029	533.7762093361322	87.66	1.4675	87.654	86.773	88.241	-0.0056229					137	72	3	0	0	0	0.034444	3	23124	23080;23124;23160		58.679	31.795	1	1370500			3628	12661	1858	1858	4681;4682;4683	4682					0.008115184918551677
AYFFYKKRR	9	Unmodified	_AYFFYKKRR_					0	0	0		ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	ENSG00000260314|ENST00000569591|MRC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2115478515625	3	426.90838	1277.70331	-0.85344	-0.00036434	-0.67137	-0.00028662	-1.5248	-0.00065095	426.9083364337291	35.18	0.21057	35.18	35.118	35.328	0					11	7	2	0	0	0	0.26127	1	7014	7014		2.7352	0	1	55977			3629	8652	1859	1859	4684	4684					0.0755679514215899
AYFKDFHLL	9	Unmodified	_AYFKDFHLL_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3062133789062	2	577.305667	1152.59678	0.47691	0.00027532	-0.29666	-0.00017127	0.18025	0.00010406	577.3055083217464	60.486	0.51413	60.486	60.305	60.819	0					34	18	2	0	0	0	0.0054984	1	14836	14836		86.332	58.703	1	988590			3630	1188	1860	1860	4685	4685					0.026586198569930275
AYFKDFHLL	9	Unmodified	_AYFKDFHLL_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3054809570312	2	577.305667	1152.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.548	1	60.645	60.145	61.145	0.096985								0	0	0	0.0060707	1	14810	14810		86.332	55.695	1				3631	1188	1860	1860	4686	4686					0.026586198569930275
AYFKDFHLL	9	Unmodified	_AYFKDFHLL_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.326171875	2	577.305667	1152.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.462	1	60.451	59.951	60.951	-0.011486								0	0	0	0.018587	1	14782	14782		70.332	39.695	1				3632	1188	1860	1860	4687	4687					0.026586198569930275
AYFKDFHLL	9	Unmodified	_AYFKDFHLL_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3058471679688	2	577.305667	1152.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.724	1	60.714	60.214	61.214	-0.0094566								0	0	0	0.018587	1	14862	14862		70.332	44.064	1				3633	1188	1860	1860	4688	4688					0.026586198569930275
AYFKEIPPF	9	Unmodified	_AYFKEIPPF_					0	0	0			REV__nc|ENSG00000037474|Q08J23-3|NSUN2	REV__nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3235473632812	2	556.294768	1110.57498	0.48635	0.00027056	3.7781	0.0021017	4.2644	0.0023723	556.2968734457223	66.342	0.076782	66.342	66.292	66.369	0					4	2	2	0	0	0	0.22431	1	16606	16606		20.871	8.3397	1	90768	+		3634	13511	1861	1861	4689	4689					0.02411815108416704
AYFNFPEL	8	Unmodified	_AYFNFPEL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.79833984375	2	500.742368	999.470183	0.61122	0.00030606	-1.1868	-0.00059429	-0.5756	-0.00028823	500.7417375880815	84.267	0.50546	84.267	83.932	84.437	0					35	20	2	0	0	0	0.31088	1	22085	22085		15.847	9.6414	1	296220			3635	4063	1862	1862	4690	4690					-0.029573063681368694
AYFNFPEL	8	Unmodified	_AYFNFPEL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7974548339844	2	500.742368	999.470183	0.55755	0.00027919	-1.3571	-0.00067956	-0.79955	-0.00040037	500.7417985209068	84.05	0.51743	84.127	83.873	84.39	0.077095					33	20	2	0	0	0	0.27344	1	22004	22004		26.884	12.045	1	284980			3636	4063	1862	1862	4691	4691					-0.029573063681368694
AYFNFPEL	8	Unmodified	_AYFNFPEL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7974853515625	2	500.742368	999.470183	0.54877	0.00027479	-0.95654	-0.00047898	-0.40777	-0.00020419	500.74183139701773	84.177	0.53437	84.16	83.955	84.489	-0.016823					36	22	2	0	0	0	0.24743	1	22011	22011		34.102	7.2188	1	350070			3637	4063	1862	1862	4692	4692					-0.029573063681368694
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2842407226562	2	557.2844	1112.55425	0.17954	0.00010006	0.22418	0.00012493	0.40372	0.00022499	557.2841990982974	93.829	0.61119	93.829	93.542	94.153	0					126	47	4	0	0	0	0.0059482	2	24998	24959;24998		85.642	51.24	1	392180			3638	4063	1863	1863	4693;4694	4694					0.002472247287641949
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2843017578125	2	557.2844	1112.55425	0.27432	0.00015288	0.2255	0.00012567	0.49982	0.00027854	557.2842005521638	93.629	0.74312	93.716	93.474	94.217	0.08667					147	56	4	0	0	0	0.014888	2	24967	24924;24967		71.922	37.521	1	694480			3639	4063	1863	1863	4695;4696	4696					0.002472247287641949
AYFNFPELL	9	Unmodified	_AYFNFPELL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2843627929688	2	557.2844	1112.55425	0.37157	0.00020707	0.27052	0.00015075	0.64209	0.00035782	557.2841928338336	93.751	0.72968	93.751	93.462	94.192	-0.00051117					119	51	3	0	0	0	0.014888	3	24983	24944;24983;25026		71.922	43.706	1	806290			3640	4063	1863	1863	4697;4698;4699	4698					0.002472247287641949
AYFNKKII	8	Unmodified	_AYFNKKII_					0	0	0			REV__Harlequin-int_dup274|chr7:135172831-135173811:+|1.6690129096142616|0.3270592348791503|2.35|542.0|6|1|sense	REV__Harlequin-int_dup274|chr7:135172831-135173811:+|1.6690129096142616|0.3270592348791503|2.35|542.0|6|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.28802490234375	2	498.797478	995.580402	0.32934	0.00016427	-3.7631	-0.001877	-3.4338	-0.0017128	498.7955723060849	41.378	0.54166	41.474	40.987	41.529	0.096626					25	19	2	0	0	0	0.33916	1	8859	8859		26.341	5.4701	1	520530	+		3641	22712	1864	1864	4700	4700					0.08243538690908281
AYFPELIANF	10	Unmodified	_AYFPELIANF_					0	0	0		nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.8038330078125	2	592.802957	1183.59136	0.39593	0.00023471	0.4024	0.00023855	0.79834	0.00047326	592.8032550071392	91.958	0.55962	91.958	91.689	92.249	0					93	36	3	0	0	0	0.075619	2	24452	24452;24458		53.404	44.021	1	294970			3642	5812	1865	1865	4701;4702	4701					0.006908962745228564
AYFPELIANF	10	Unmodified	_AYFPELIANF_					0	0	0		nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.8029174804688	2	592.802957	1183.59136	0.42673	0.00025297	0.30102	0.00017844	0.72775	0.00043141	592.8031175476166	91.812	0.62845	91.902	91.621	92.249	0.090675					82	38	3	0	0	0	0.038178	1	24399	24399		61.602	48.559	1	387240			3643	5812	1865	1865	4703	4703					0.006908962745228564
AYFPELIANF	10	Unmodified	_AYFPELIANF_					0	0	0		nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.8037719726562	2	592.802957	1183.59136	0.56476	0.00033479	0.15204	9.0127E-05	0.71679	0.00042492	592.803057521865	91.964	0.60454	91.964	91.664	92.269	0.00047302					77	36	3	0	0	0	0.02128	2	24419	24419;24462		70.332	58.455	1	441780			3644	5812	1865	1865	4704;4705	4704					0.006908962745228564
AYFPYFITY	9	Unmodified	_AYFPYFITY_					0	0	0		ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENST00000392204.6_1_19:36036533-36036719:+|nuORF;ENST00000595180.5_1_19:36036641-36037580:+|nuORF;ENST00000596232.1_1_19:36036641-36037015:+|nuORF	ENSG00000105677|ENST00000222284|TMEM147	ENSG00000105677|ENST00000222284|TMEM147	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.313720703125	2	592.786776	1183.559	0.50733	0.00030074	3.8478	0.0022809	4.3552	0.0025817	593.2922826803997	89.846	0.57988	89.846	89.479	90.059	0					73	46	2	0	0	0	0.14099	1	23808	23808		34.102	20.196	1	89515			3645	2008	1866	1866	4706	4706					-0.02543891128470932
AYFPYFITY	9	Unmodified	_AYFPYFITY_					0	0	0		ENSG00000105677|ENST00000222284|TMEM147;ENST00000477168.6_1_19:36036641-36037810:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENST00000392204.6_1_19:36036533-36036719:+|nuORF;ENST00000595180.5_1_19:36036641-36037580:+|nuORF;ENST00000596232.1_1_19:36036641-36037015:+|nuORF	ENSG00000105677|ENST00000222284|TMEM147	ENSG00000105677|ENST00000222284|TMEM147	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.3134765625	2	592.786776	1183.559	0.50583	0.00029985	3.0153	0.0017874	3.5211	0.0020873	592.7867385849029	89.829	1.1123	89.828	89.323	90.435	-0.00081635					118	87	2	0	0	0	0.14099	1	23777	23777		42.095	28.189	1	170180			3646	2008	1866	1866	4707	4707					-0.02543891128470932
AYFQKPLLL	9	Unmodified	_AYFQKPLLL_					0	0	0		nc|ENSG00000113492|Q9BYV1-2|AGXT2;ENSG00000113492|ENST00000231420|AGXT2	nc|ENSG00000113492|Q9BYV1-2|AGXT2	nc|ENSG00000113492|Q9BYV1-2|AGXT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8264770507812	2	546.826235	1091.63792	0.48454	0.00026496	1.3348	0.00072991	1.8194	0.00099488	546.82619968344	62.326	1.4113	62.326	61.784	63.195	0					96	52	3	0	0	0	0.013258	2	15362	15362;15411		74.423	42.117	1	1060300			3647	2506	1867	1867	4708;4709	4708					0.09576380896464798
AYFQKPLLL	9	Unmodified	_AYFQKPLLL_					0	0	0		nc|ENSG00000113492|Q9BYV1-2|AGXT2;ENSG00000113492|ENST00000231420|AGXT2	nc|ENSG00000113492|Q9BYV1-2|AGXT2	nc|ENSG00000113492|Q9BYV1-2|AGXT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8262939453125	2	546.826235	1091.63792	0.48718	0.0002664	1.4628	0.00079991	1.95	0.0010663	546.8261649952119	62.226	1.531	62.323	61.455	62.986	0.096985					97	55	3	0	0	0	0.0085732	1	15328	15328		81.613	47.211	1	942180			3648	2506	1867	1867	4710	4710					0.09576380896464798
AYFQKPLLL	9	Unmodified	_AYFQKPLLL_					0	0	0		nc|ENSG00000113492|Q9BYV1-2|AGXT2;ENSG00000113492|ENST00000231420|AGXT2	nc|ENSG00000113492|Q9BYV1-2|AGXT2	nc|ENSG00000113492|Q9BYV1-2|AGXT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8262939453125	2	546.826235	1091.63792	0.57081	0.00031214	1.2136	0.00066362	1.7844	0.00097576	546.8260776469662	62.321	1.2922	62.312	61.784	63.076	-0.0085564					95	47	4	0	0	0	0.0085732	2	15332	15332;15379		81.613	47.211	1	1077400			3649	2506	1867	1867	4711;4712	4711					0.09576380896464798
AYFRFDIN	8	Unmodified	_AYFRFDIN_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7960205078125	2	523.258717	1044.50288	0.48696	0.00025481	0.16203	8.4781E-05	0.64898	0.00033959	523.2587353395483	32.783	0.55679	32.839	32.506	33.063	0.055313					29	19	2	0	0	0	0.34039	1	6350	6350		15.847	4.2069	1	148940			3650	7854	1868	1868	4713	4713					-0.01759099245282414
AYFTAPALV	9	Unmodified	_AYFTAPALV_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.2304992675781	2	476.760561	951.506569	0.25274	0.00012049	-0.032889	-1.568E-05	0.21985	0.00010481	476.760720657101	81.165	0.40435	81.139	80.889	81.293	-0.025238					18	17	2	0	0	0	0.24913	1	21120	21120		12.532	4.6214	1	77021	+		3651	14684	1869	1869	4714	4714					0.028875705285599906
AYFTAPALV	9	Unmodified	_AYFTAPALV_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	476.760561	951.506569	0.12921	6.1604E-05	-0.32271	-0.00015385	-0.19349	-9.225E-05	476.76055310762	81.026	0.32645	81.026	80.904	81.23	0	-0.056691	-0.00011868	NaN	12.532	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70781	+		3652	14684	1869	1869							0.028875705285599906
AYFTSRDLF	9	Unmodified	_AYFTSRDLF_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.277587890625	2	560.277106	1118.53966	0.083893	4.7003E-05	0.15091	8.4554E-05	0.23481	0.00013156	560.2773147799708	59.63	0.56959	59.63	59.38	59.949	0					46	19	3	0	0	0	0.012386	1	14592	14592		75.761	35.804	1	1620700			3653	12873	1870	1870	4715	4715					-0.014868474193917791
AYFTSRDLF	9	Unmodified	_AYFTSRDLF_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.2769165039062	2	560.277106	1118.53966	0.21644	0.00012126	-0.1045	-5.8552E-05	0.11193	6.2713E-05	560.2771238773992	59.477	0.63773	59.572	59.294	59.932	0.095093					52	22	3	0	0	0	0.014206	1	14462	14462		72.968	25.219	1	1460700			3654	12873	1870	1870	4716	4716					-0.014868474193917791
AYFTSRDLF	9	Unmodified	_AYFTSRDLF_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.3298950195312	2	560.277106	1118.53966	0.33903	0.00018995	0.51056	0.00028606	0.84959	0.00047601	560.2773177884429	59.637	0.62466	59.625	59.372	59.997	-0.011486					50	21	3	0	0	0	0.20167	1	14638	14638		29.082	9.8246	1	1814700			3655	12873	1870	1870	4717	4717					-0.014868474193917791
AYGASFLSF	9	Unmodified	_AYGASFLSF_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.73468017578125	2	481.734543	961.454533	0.58257	0.00028065	-0.19628	-9.4553E-05	0.3863	0.00018609	481.73431417582697	78.399	0.9104	78.399	78.062	78.973	0					91	34	4	0	0	0	2.3311E-08	3	20287	20236;20287;20339		179.23	93.588	1	1992400			3656	5416	1871	1871	4718;4719;4720	4719					-0.02773592885182552
AYGASFLSF	9	Unmodified	_AYGASFLSF_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.734619140625	2	481.734543	961.454533	0.52406	0.00025246	-0.25529	-0.00012298	0.26877	0.00012947	481.7343073561855	78.299	0.92467	78.357	78.058	78.983	0.058151					84	34	4	0	0	0	4.4046E-07	3	20250	20200;20250;20304		162.95	77.309	1	1647600			3657	5416	1871	1871	4721;4722;4723	4722					-0.02773592885182552
AYGASFLSF	9	Unmodified	_AYGASFLSF_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7346496582031	2	481.734543	961.454533	0.73365	0.00035343	-0.40454	-0.00019488	0.32912	0.00015855	481.73422906407944	78.413	1.0685	78.382	78.034	79.102	-0.030434					113	42	4	0	0	0	2.3311E-08	3	20265	20221;20265;20316		179.23	93.588	1	1943700			3658	5416	1871	1871	4724;4725;4726	4725					-0.02773592885182552
AYGDIILTF	9	Unmodified	_AYGDIILTF_					0	0	0		ENSG00000101407|ENST00000373447|TTI1;TTI1|p.L924Wfs*37|1|0.23|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.26751708984375	2	506.771126	1011.5277	0.53998	0.00027365	-0.26897	-0.00013631	0.27101	0.00013734	506.7709312693395	84.884	0.77849	84.884	84.663	85.441	0					48	29	3	0	0	0	0.21389	1	22371	22371		25.399	11.493	1	394250			3659	1695	1872	1872	4727	4727					0.022395358374296848
AYGDIILTF	9	Unmodified	_AYGDIILTF_					0	0	0		ENSG00000101407|ENST00000373447|TTI1;TTI1|p.L924Wfs*37|1|0.23|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2676086425781	2	506.771126	1011.5277	0.51385	0.0002604	-0.5063	-0.00025658	0.0075466	3.8244E-06	506.7709418590209	84.919	0.66699	84.906	84.656	85.323	-0.01284					44	26	3	0	0	0	0.2322	1	22368	22368		20.454	12.543	1	186130			3660	1695	1872	1872	4728	4728					0.022395358374296848
AYGDIILTF	9	Unmodified	_AYGDIILTF_					0	0	0		ENSG00000101407|ENST00000373447|TTI1;TTI1|p.L924Wfs*37|1|0.23|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	506.771126	1011.5277	0.52039	0.00026372	-0.51362	-0.00026029	0.0067743	3.433E-06	506.77086675806925	84.848	0.63082	84.928	84.649	85.28	0.080887	0.022384	-0.00010268	NaN	25.399	40	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268480			3661	1695	1872	1872							0.022395358374296848
AYGESHLF	8	Unmodified	_AYGESHLF_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1;ENST00000498614.5_1_21:47421141-47423924:+|nuORF;ENST00000486023.1_1_21:47422428-47423924:+|nuORF	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.7478332519531	2	462.216517	922.418482	-0.22829	-0.00010552	0.38817	0.00017942	0.15988	7.39E-05	462.216611973519	42.27	0.46973	42.27	42.02	42.49	0					25	16	2	0	0	0	0.28969	1	9174	9174		36.044	16.605	1	657100			3662	4424	1873	1873	4729	4729					-0.04583050062046823
AYGESHLF	8	Unmodified	_AYGESHLF_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1;ENST00000498614.5_1_21:47421141-47423924:+|nuORF;ENST00000486023.1_1_21:47422428-47423924:+|nuORF	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.7478332519531	2	462.216517	922.418482	0.16028	7.4083E-05	-0.10851	-5.0157E-05	0.051763	2.3926E-05	462.2163537918953	41.885	0.43573	41.975	41.807	42.243	0.090252					24	15	2	0	0	0	0.28235	1	9097	9097		38.151	24.643	1	751490			3663	4424	1873	1873	4730	4730					-0.04583050062046823
AYGESHLF	8	Unmodified	_AYGESHLF_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1;ENST00000498614.5_1_21:47421141-47423924:+|nuORF;ENST00000486023.1_1_21:47422428-47423924:+|nuORF	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.74798583984375	2	462.216517	922.418482	0.44481	0.0002056	-0.015679	-7.2473E-06	0.42913	0.00019835	462.2164385365563	41.792	0.46464	41.889	41.77	42.235	0.096626					26	16	2	0	0	0	0.23297	1	9066	9066		53.576	25.402	1	500370			3664	4424	1873	1873	4731	4731					-0.04583050062046823
AYGFVARI	8	Unmodified	_AYGFVARI_					0	0	0		ENSG00000110799|ENST00000261405|VWF;ENST00000321023.5_1_12:6204574-6232125:-|nuORF;nc|ENSG00000110799|P04275-2|VWF	ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7532653808594	2	448.75307	895.491587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.014	1	51.061	50.561	51.561	0.046574								0	0	0	0.049354	1	11872	11872		70.716	32.564	1				3665	2330	1874	1874	4732	4732					0.03966123451232306
AYGFVARI	8	Unmodified	_AYGFVARI_					0	0	0		ENSG00000110799|ENST00000261405|VWF;ENST00000321023.5_1_12:6204574-6232125:-|nuORF;nc|ENSG00000110799|P04275-2|VWF	ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.75323486328125	2	448.75307	895.491587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.179	1	51.226	50.726	51.726	0.046574								0	0	0	0.049354	1	11923	11923		70.716	32.564	1				3666	2330	1874	1874	4733	4733					0.03966123451232306
AYGFVARI	8	Unmodified	_AYGFVARI_					0	0	0		ENSG00000110799|ENST00000261405|VWF;ENST00000321023.5_1_12:6204574-6232125:-|nuORF;nc|ENSG00000110799|P04275-2|VWF	ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7532653808594	2	448.75307	895.491587	0.42017	0.00018855	0.2835	0.00012722	0.70367	0.00031577	448.7530137641784	51.121	0.69896	51.13	50.807	51.506	0.0095634					82	26	4	0	0	0	0.065797	2	11877	11877;11925		70.716	32.564	1	2591300			3667	2330	1874	1874	4734;4735	4734					0.03966123451232306
AYGGAFYAF	9	Unmodified	_AYGGAFYAF_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH;L3HYPDH|p.I341Lfs*2|1|0.33|ENSG00000126790|chr14:59473010-59473011|-/ATAAA|frameshift_variant;ENST00000527981.1_1_14:59945878-59946064:-|nuORF	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7215576171875	2	483.721436	965.428318	0.23691	0.0001146	0.0264	1.277E-05	0.26331	0.00012737	483.72133027308973	70.675	0.83113	70.675	70.378	71.209	0					60	29	3	0	0	0	0.00213	2	17896	17896;17941		109.15	91.019	1	1434000			3668	3291	1875	1875	4736;4737	4736					-0.05577862056668437
AYGGAFYAF	9	Unmodified	_AYGGAFYAF_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH;L3HYPDH|p.I341Lfs*2|1|0.33|ENSG00000126790|chr14:59473010-59473011|-/ATAAA|frameshift_variant;ENST00000527981.1_1_14:59945878-59946064:-|nuORF	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7215270996094	2	483.721436	965.428318	0.25365	0.0001227	0.051539	2.493E-05	0.30519	0.00014763	483.7213705743048	70.638	0.60362	70.699	70.465	71.069	0.060783					49	21	3	0	0	0	0.0096669	2	17935	17886;17935		79.935	56.786	1	1332600			3669	3291	1875	1875	4738;4739	4739					-0.05577862056668437
AYGGAFYAF	9	Unmodified	_AYGGAFYAF_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH;L3HYPDH|p.I341Lfs*2|1|0.33|ENSG00000126790|chr14:59473010-59473011|-/ATAAA|frameshift_variant;ENST00000527981.1_1_14:59945878-59946064:-|nuORF	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7214660644531	2	483.721436	965.428318	0.36384	0.000176	-0.084239	-4.0748E-05	0.2796	0.00013525	483.72131767050934	70.766	0.72317	70.741	70.407	71.13	-0.024872					59	25	3	0	0	0	0.0040737	1	17918	17918		93.763	63.538	1	1363300			3670	3291	1875	1875	4740	4740					-0.05577862056668437
AYGGAFYAF	9	Unmodified	_AYGGAFYAF_					0	0	0		ENSG00000126790|ENST00000247194|L3HYPDH;L3HYPDH|p.I341Lfs*2|1|0.33|ENSG00000126790|chr14:59473010-59473011|-/ATAAA|frameshift_variant;ENST00000527981.1_1_14:59945878-59946064:-|nuORF	ENSG00000126790|ENST00000247194|L3HYPDH	ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.2314758300781	2	483.721436	965.428318	0.376	0.00018188	-1.4076	-0.00068088	-1.0316	-0.000499	483.72068181919735	71.326	0.32368	71.301	71.13	71.454	-0.024872					15	11	2	0	0	0	0.21902	1	18134	18134		20.871	8.3397	1	146980			3671	3291	1875	1875	4741	4741					-0.05577862056668437
AYGGWTITV	9	Unmodified	_AYGGWTITV_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2311096191406	2	484.247818	966.481082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.179	1	71.179	70.679	71.679	0								0	0	0	0.10826	1	18080	18080		44.407	14.182	1		+		3672	15377	1876	1876	4742	4742					-0.0034990399385605997
AYGHFSYEF	9	Unmodified	_AYGHFSYEF_					0	0	0		nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF	nc|ENSG00000073331|Q96QP1-2|ALPK1	nc|ENSG00000073331|Q96QP1-2|ALPK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2847290039062	2	560.740357	1119.46616	0.5747	0.00032226	0.16783	9.4109E-05	0.74253	0.00041637	560.740207872453	54.441	1.0844	54.441	54.136	55.221	0					112	39	5	0	0	0	0.00035727	1	12931	12931		131.3	105.9	1	7133900			3673	1000	1877	1877	4743	4743					-0.08879395861845296
AYGHFSYEF	9	Unmodified	_AYGHFSYEF_					0	0	0		nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF	nc|ENSG00000073331|Q96QP1-2|ALPK1	nc|ENSG00000073331|Q96QP1-2|ALPK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.28466796875	2	560.740357	1119.46616	0.60344	0.00033837	0.26191	0.00014686	0.86535	0.00048524	560.7402327401165	54.33	1.0654	54.393	54.115	55.181	0.063202					116	39	5	0	0	0	0.00035727	1	12905	12905		131.3	105.9	1	7956300			3674	1000	1877	1877	4744	4744					-0.08879395861845296
AYGHFSYEF	9	Unmodified	_AYGHFSYEF_					0	0	0		nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1;ENST00000504745.1_1_4:113347516-113362363:+|nuORF	nc|ENSG00000073331|Q96QP1-2|ALPK1	nc|ENSG00000073331|Q96QP1-2|ALPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7404174804688	2	560.740357	1119.46616	0.5985	0.0003356	-0.55687	-0.00031226	0.041636	2.3347E-05	560.7399568202566	54.801	0.96683	54.786	54.415	55.382	-0.015919					98	34	4	0	0	0	6.8028E-05	2	13022	13022;13066		146.01	121.99	1	8129400			3675	1000	1877	1877	4745;4746	4745					-0.08879395861845296
AYGKDFHLI	9	Unmodified	_AYGKDFHLI_					0	0	0		nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2826538085938	2	532.282192	1062.54983	0.4471	0.00023798	-0.63713	-0.00033914	-0.19004	-0.00010115	532.2822355714317	44.864	0.8924	44.933	44.682	45.574	0.068569					96	31	4	0	0	0	0.082647	1	9991	9991		61.602	21.652	1	4048800			3676	8042	1878	1878	4747	4747					0.021057603058579843
AYGLVSATF	9	Unmodified	_AYGLVSATF_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7421875	2	464.742368	927.470183	0.037359	1.7362E-05	-0.035848	-1.666E-05	0.0015105	7.0198E-07	464.7422784213272	66.722	0.97162	66.722	66.396	67.368	0					88	33	4	0	0	0	4.6532E-11	3	16679	16679;16727;16775		188.08	87.707	1	2666500			3677	5263	1879	1879	4748;4749;4750	4748					0.00354693631857117
AYGLVSATF	9	Unmodified	_AYGLVSATF_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7422790527344	2	464.742368	927.470183	0.026877	1.2491E-05	-0.084888	-3.9451E-05	-0.058012	-2.696E-05	464.7422574975545	66.625	0.97736	66.709	66.354	67.332	0.083832					91	34	4	0	0	0	1.6676E-16	3	16676	16634;16676;16724		207.55	94.955	1	2530700			3678	5263	1879	1879	4751;4752;4753	4752					0.00354693631857117
AYGLVSATF	9	Unmodified	_AYGLVSATF_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7422790527344	2	464.742368	927.470183	0.069082	3.2105E-05	-0.075394	-3.5039E-05	-0.0063125	-2.9337E-06	464.74226248024826	66.722	0.94115	66.708	66.353	67.294	-0.013588					89	33	4	0	0	0	1.6676E-16	3	16708	16669;16708;16759		207.55	107.18	1	2670100			3679	5263	1879	1879	4754;4755;4756	4755					0.00354693631857117
AYGNIFLSDRD	11	Unmodified	_AYGNIFLSDRD_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.8634948730469	3	424.206932	1269.59897	-0.31874	-0.00013521	-0.014679	-6.2269E-06	-0.33342	-0.00014144	424.20656656853345	31.441	0.60401	31.483	30.996	31.6	0.042366					42	21	3	0	0	0	0.33122	1	5844	5844		4.4062	0	1	184180	+		3680	18137	1880	1880	4757	4757					-0.02504996195852982
AYGNVFSAF	9	Unmodified	_AYGNVFSAF_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2323913574219	2	488.232168	974.449782	0.25152	0.0001228	0.19291	9.4184E-05	0.44443	0.00021699	488.23224722212524	73.183	0.85674	73.183	72.881	73.738	0					109	30	5	0	0	0	6.6781E-10	1	18700	18700		180.01	98.397	1	3265600			3681	3836	1881	1881	4758	4758					-0.03846477027957462
AYGNVFSAF	9	Unmodified	_AYGNVFSAF_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.23236083984375	2	488.232168	974.449782	0.18966	9.2596E-05	0.19199	9.3735E-05	0.38164	0.00018633	488.2322636460427	73.166	1.012	73.22	72.737	73.749	0.053833					108	36	4	0	0	0	5.6754E-05	3	18678	18634;18678;18727		147.83	83.595	1	3020300			3682	3836	1881	1881	4759;4760;4761	4760					-0.03846477027957462
AYGNVFSAF	9	Unmodified	_AYGNVFSAF_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.232421875	2	488.232168	974.449782	0.37504	0.00018311	0.055018	2.6862E-05	0.43006	0.00020997	488.2321878779949	73.237	1.0891	73.207	72.767	73.856	-0.029305					119	39	4	0	0	0	0.00014409	3	18709	18663;18709;18750		133.7	69.466	1	2973700			3683	3836	1881	1881	4762;4763;4764	4763					-0.03846477027957462
AYGPLPFLK	9	Unmodified	_AYGPLPFLK_					0	0	0			REV__ENST00000589819.1_1_18:44426648-44444164:-|nuORF	REV__ENST00000589819.1_1_18:44426648-44444164:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.30059814453125	2	503.292028	1004.5695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.975	1	18.975	18.475	19.475	0								0	0	0	0.23367	1	2094	2094		11.64	0.81637	1		+		3684	13849	1882	1882	4765	4765					0.0674013631660273
AYGPPSNFLEI	11	Unmodified	_AYGPPSNFLEI_					0	0	0		ENST00000465030.1_1_X:70280941-70288225:-|nuORF;nc|ENSG00000112335|O60493-3|SNX3;ENST00000490561.6_1_X:70280209-70288156:-|nuORF;nc|ENSG00000112335|O60493-2|SNX3;nc|ENSG00000112335|O60493-4|SNX3;nc|ENSG00000147164|Q9UMY4-3|SNX12;ENSG00000147164|ENST00000374274|SNX12;ENSG00000112335|ENST00000230085|SNX3;nc|ENSG00000147164|Q9UMY4-1|SNX12	ENST00000465030.1_1_X:70280941-70288225:-|nuORF	ENST00000465030.1_1_X:70280941-70288225:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.3040161132812	2	604.303321	1206.59209	0.72953	0.00044086	-0.32017	-0.00019348	0.40936	0.00024738	604.3032054528913	78.895	0.53564	78.895	78.669	79.205	0					31	22	2	0	0	0	0.30708	2	20424	20424;20471		21.59	4.4773	1	175610			3685	10789	1883	1883	4766;4767	4766					-0.0029430907641199155
AYGPPSNFLEI	11	Unmodified	_AYGPPSNFLEI_					0	0	0		ENST00000465030.1_1_X:70280941-70288225:-|nuORF;nc|ENSG00000112335|O60493-3|SNX3;ENST00000490561.6_1_X:70280209-70288156:-|nuORF;nc|ENSG00000112335|O60493-2|SNX3;nc|ENSG00000112335|O60493-4|SNX3;nc|ENSG00000147164|Q9UMY4-3|SNX12;ENSG00000147164|ENST00000374274|SNX12;ENSG00000112335|ENST00000230085|SNX3;nc|ENSG00000147164|Q9UMY4-1|SNX12	ENST00000465030.1_1_X:70280941-70288225:-|nuORF	ENST00000465030.1_1_X:70280941-70288225:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.3043212890625	2	604.303321	1206.59209	0.7062	0.00042676	-0.21729	-0.00013131	0.48891	0.00029545	604.3033180440979	78.843	0.606	78.901	78.629	79.235	0.058151					35	25	2	0	0	0	0.31831	2	20392	20392;20400		20.581	3.468	1	103100			3686	10789	1883	1883	4768;4769	4768					-0.0029430907641199155
AYGPPSNFLEI	11	Unmodified	_AYGPPSNFLEI_					0	0	0		ENST00000465030.1_1_X:70280941-70288225:-|nuORF;nc|ENSG00000112335|O60493-3|SNX3;ENST00000490561.6_1_X:70280209-70288156:-|nuORF;nc|ENSG00000112335|O60493-2|SNX3;nc|ENSG00000112335|O60493-4|SNX3;nc|ENSG00000147164|Q9UMY4-3|SNX12;ENSG00000147164|ENST00000374274|SNX12;ENSG00000112335|ENST00000230085|SNX3;nc|ENSG00000147164|Q9UMY4-1|SNX12	ENST00000465030.1_1_X:70280941-70288225:-|nuORF	ENST00000465030.1_1_X:70280941-70288225:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.3037719726562	2	604.303321	1206.59209	0.6491	0.00039226	-0.071235	-4.3047E-05	0.57787	0.00034921	604.3032447167654	78.958	0.53613	78.928	78.715	79.251	-0.030426					31	22	2	0	0	0	0.2331	1	20421	20421		28.234	10.791	1	129970			3687	10789	1883	1883	4770	4770					-0.0029430907641199155
AYGSLFNTI	9	Unmodified	_AYGSLFNTI_					0	0	0		nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF;nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3	nc|ENSG00000137944|Q6YP21-2|KYAT3	nc|ENSG00000137944|Q6YP21-2|KYAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2532958984375	2	493.2531	984.491647	0.42284	0.00020857	0.44158	0.00021781	0.86442	0.00042638	493.2531938086461	71.248	1.141	71.248	70.963	72.104	0					120	40	5	0	0	0	6.1526E-05	3	18121	18074;18121;18174		147.06	75.137	1	5497600			3688	4097	1884	1884	4771;4772;4773	4772					-0.0012192133942789951
AYGSLFNTI	9	Unmodified	_AYGSLFNTI_					0	0	0		nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF;nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3	nc|ENSG00000137944|Q6YP21-2|KYAT3	nc|ENSG00000137944|Q6YP21-2|KYAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.25335693359375	2	493.2531	984.491647	0.37887	0.00018688	0.34654	0.00017093	0.72541	0.00035781	493.25319394593726	71.235	1.187	71.296	70.987	72.174	0.060776					102	42	4	0	0	0	6.1526E-05	3	18095	18053;18095;18148		147.06	75.137	1	5358300			3689	4097	1884	1884	4774;4775;4776	4775					-0.0012192133942789951
AYGSLFNTI	9	Unmodified	_AYGSLFNTI_					0	0	0		nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF;nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3	nc|ENSG00000137944|Q6YP21-2|KYAT3	nc|ENSG00000137944|Q6YP21-2|KYAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.25341796875	2	493.2531	984.491647	0.446	0.00021999	0.42465	0.00020946	0.87065	0.00042945	493.25322193766664	71.302	1.2073	71.277	71.025	72.232	-0.024872					110	43	4	0	0	0	5.0285E-07	3	18131	18084;18131;18184		160.52	78.626	1	5511600			3690	4097	1884	1884	4777;4778;4779	4778					-0.0012192133942789951
AYGSTFCR	8	Unmodified	_AYGSTFCR_					0	0	0		ENSG00000182816|ENST00000399889|KRTAP13-2	ENSG00000182816|ENST00000399889|KRTAP13-2	ENSG00000182816|ENST00000399889|KRTAP13-2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.2563171386719	2	452.70272	903.390887	-0.046632	-2.111E-05	1.3847	0.00062688	1.3381	0.00060577	452.7037302942702	22.792	0.5417	22.792	22.505	23.047	0					25	18	2	0	0	0	0.34319	1	3302	3302		5.7604	0	1	36452			3691	7322	1885	1885	4780	4780					-0.06467276593934912
AYGTVHYF	8	Unmodified	_AYGTVHYF_					0	0	0		nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000514938.1_1_22:50943733-50944613:-|nuORF	nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-3|LMF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.74920654296875	2	479.226885	956.439217	0.14925	7.1525E-05	0.49136	0.00023547	0.64061	0.000307	479.2269908136469	44.149	0.58364	44.149	43.878	44.462	0					42	21	3	0	0	0	0.25505	1	9735	9735		45.75	18.866	1	731020			3692	1554	1886	1886	4781	4781					-0.04074459682385623
AYGTVHYF	8	Unmodified	_AYGTVHYF_					0	0	0		nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000514938.1_1_22:50943733-50944613:-|nuORF	nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-3|LMF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.749267578125	2	479.226885	956.439217	0.26098	0.00012507	0.10977	5.2605E-05	0.37075	0.00017767	479.2268132303021	43.76	0.56036	43.837	43.567	44.128	0.077515					47	20	3	0	0	0	0.26518	1	9626	9626		42.968	12.743	1	768920			3693	1554	1886	1886	4782	4782					-0.04074459682385623
AYGTVHYF	8	Unmodified	_AYGTVHYF_					0	0	0		nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000514938.1_1_22:50943733-50944613:-|nuORF	nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-3|LMF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7492370605469	2	479.226885	956.439217	0.29824	0.00014293	0.23849	0.00011429	0.53673	0.00025722	479.2269094509794	43.772	0.49979	43.856	43.576	44.075	0.083996					40	18	3	0	0	0	0.26518	1	9609	9609		34.187	11.039	1	695990			3694	1554	1886	1886	4783	4783					-0.04074459682385623
AYHGIVYVGF	10	Unmodified	_AYHGIVYVGF_					0	0	0			REV__OR4K14|p.A37Ifs*7|1|0.07|ENSG00000169484|chr14:20015086-20015087|-/TATG|frameshift_variant	REV__OR4K14|p.A37Ifs*7|1|0.07|ENSG00000169484|chr14:20015086-20015087|-/TATG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.3148803710938	2	563.290017	1124.56548	0.63868	0.00035976	0.049486	2.7875E-05	0.68817	0.00038764	563.2900805319097	60.89	0.45174	60.881	60.516	60.968	-0.0094566					35	16	3	0	0	0	0.30586	1	14817	14817		12.532	0	1	888890	+		3695	23281	1887	1887	4784	4784					0.008180468229056714
AYHNSPAYL	9	Unmodified	_AYHNSPAYL_					0	0	0		nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|539|37.17|0.3|6.96|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1;ENST00000493660.5_1_17:38792069-38802054:-|nuORF;ENST00000469334.5_1_17:38788437-38802054:-|nuORF	nc|ENSG00000073584|Q969G3-6|SMARCE1	nc|ENSG00000073584|Q969G3-6|SMARCE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2484130859375	2	518.248349	1034.48214	0.65487	0.00033939	0.16311	8.453E-05	0.81798	0.00042392	518.2482829216551	33.752	0.82101	33.752	33.456	34.277	0					72	29	3	0	0	0	0.012386	1	6561	6561		75.761	37.61	1	1319600			3696	141	1888	1888	4785	4785					-0.03371689624964347
AYHNSPAYL	9	Unmodified	_AYHNSPAYL_					0	0	0		nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|539|37.17|0.3|6.96|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1;ENST00000493660.5_1_17:38792069-38802054:-|nuORF;ENST00000469334.5_1_17:38788437-38802054:-|nuORF	nc|ENSG00000073584|Q969G3-6|SMARCE1	nc|ENSG00000073584|Q969G3-6|SMARCE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.248291015625	2	518.248349	1034.48214	0.73161	0.00037916	0.15934	8.2577E-05	0.89095	0.00046173	518.2483240780938	33.605	0.76902	33.671	33.38	34.149	0.06636					71	27	4	0	0	0	0.066761	1	6505	6505		56.177	14.082	1	1497900			3697	141	1888	1888	4786	4786					-0.03371689624964347
AYHNSPAYL	9	Unmodified	_AYHNSPAYL_					0	0	0		nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|539|37.17|0.3|6.96|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1;ENST00000493660.5_1_17:38792069-38802054:-|nuORF;ENST00000469334.5_1_17:38788437-38802054:-|nuORF	nc|ENSG00000073584|Q969G3-6|SMARCE1	nc|ENSG00000073584|Q969G3-6|SMARCE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2486572265625	2	518.248349	1034.48214	0.13511	7.0019E-05	0.63855	0.00033093	0.77366	0.00040095	518.2485903971472	33.583	0.82194	33.65	33.387	34.209	0.066704					73	29	4	0	0	0	0.023103	1	6520	6520		71.922	33.771	1	1276100			3698	141	1888	1888	4787	4787					-0.03371689624964347
AYIACWAPF	9	Unmodified	_AYIACWAPF_					0	0	0		ENSG00000198049|ENST00000367126|AVPR1B	ENSG00000198049|ENST00000367126|AVPR1B	ENSG00000198049|ENST00000367126|AVPR1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.7821044921875	2	521.246763	1040.47897	0.41921	0.00021851	3.3599	0.0017513	3.7791	0.0019698	521.2488252260978	67.336	0.77161	67.336	67.106	67.878	0					35	26	2	0	0	0	0.19319	1	17026	17026		28.173	12.405	1	197010			3699	8031	1889	1889	4788	4788					-0.03964656003336131
AYIACWAPF	9	Unmodified	_AYIACWAPF_					0	0	0		ENSG00000198049|ENST00000367126|AVPR1B	ENSG00000198049|ENST00000367126|AVPR1B	ENSG00000198049|ENST00000367126|AVPR1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	521.246763	1040.47897	0.24474	0.00012757	2.8209	0.0014704	3.0657	0.001598	521.2482539249428	67.345	0.41374	67.329	67.148	67.562	-0.016296	-0.0035002	-6.6712E-05	NaN	28.173	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183920			3700	8031	1889	1889							-0.03964656003336131
AYIADHLGF	9	Unmodified	_AYIADHLGF_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-7|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.75347900390625	2	503.753267	1005.49198	0.43935	0.00022132	-0.059248	-2.9846E-05	0.3801	0.00019148	503.7532421859035	57.409	0.76348	57.409	57.09	57.854	0					68	27	4	0	0	0	6.8028E-05	2	13839	13839;13888		146.01	99.086	1	2049400			3701	4644	1890	1890	4789;4790	4789					-0.01054501619569237
AYIADHLGF	9	Unmodified	_AYIADHLGF_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-7|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7534484863281	2	503.753267	1005.49198	0.33538	0.00016895	0.6119	0.00030825	0.94728	0.0004772	503.753735378125	57.223	1.453	57.301	56.678	58.131	0.078674					94	53	3	0	0	0	4.6753E-07	1	13799	13799		161.89	114.97	1	2701300			3702	4644	1890	1890	4791	4791					-0.01054501619569237
AYIADHLGF	9	Unmodified	_AYIADHLGF_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-7|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.75335693359375	2	503.753267	1005.49198	0.18786	9.4634E-05	0.2118	0.00010669	0.39965	0.00020133	503.75337071242194	57.508	0.94083	57.49	57.17	58.111	-0.0172					79	34	4	0	0	0	6.8028E-05	2	13868	13868;13917		146.01	106.05	1	2216300			3703	4644	1890	1890	4792;4793	4792					-0.01054501619569237
AYIASVLVRYK	11	Unmodified	_AYIASVLVRYK_					0	0	0			REV__ENSG00000101203|ENST00000358894|COL20A1	REV__ENSG00000101203|ENST00000358894|COL20A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8817749023438	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.23	1	101.22	100.72	101.72	-0.0054703								0	0	0	0.38114	1	27031	27031		1.3295	0.13619	1		+		3704	14256	1891	1891	4794	4794					0.11490511390979918
AYIATGYFLS	10	Unmodified	_AYIATGYFLS_					0	0	0			REV__nc|ENSG00000182477|P59922|OR2B8P	REV__nc|ENSG00000182477|P59922|OR2B8P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8302612304688	2	553.281857	1104.54916	0.48059	0.0002659	1.5176	0.00083966	1.9982	0.0011056	553.2827463306287	82.652	0.29726	82.652	82.41	82.708	0					18	10	2	0	0	0	0.30586	1	21577	21577		19.257	6.2145	1	108470	+		3705	23122	1892	1892	4795	4795					0.0010692086611925333
AYIATGYFLS	10	Unmodified	_AYIATGYFLS_					0	0	0			REV__nc|ENSG00000182477|P59922|OR2B8P	REV__nc|ENSG00000182477|P59922|OR2B8P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8302612304688	2	553.281857	1104.54916	0.40979	0.00022673	1.1666	0.00064545	1.5764	0.00087218	553.282756259778	82.46	0.62569	82.533	82.353	82.979	0.073097					34	24	2	0	0	0	0.30586	1	21515	21515		19.257	7.0163	1	145610	+		3706	23122	1892	1892	4796	4796					0.0010692086611925333
AYIERMNYI	9	Oxidation (M)	_AYIERM(Oxidation (M))NYI_		AYIERM(1)NYI		AYIERM(130)NYI	0	0	1		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;ENSG00000176105|ENST00000314574|YES1	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.7897338867188	2	594.789524	1187.56449	0.16648	9.9022E-05	0.30254	0.00017995	0.46903	0.00027897	594.7897378148289	42.51	0.75718	42.51	42.277	43.034	0					78	27	4	0	0	0	0.00019464	2	9275	9226;9275		133.05	89.28	1	2032600			3707	428	1893	1893	4797;4798	4798		42			-0.02178535608322818
AYIERMNYI	9	Oxidation (M)	_AYIERM(Oxidation (M))NYI_		AYIERM(1)NYI		AYIERM(110)NYI	0	0	1		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;ENSG00000176105|ENST00000314574|YES1	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7896728515625	2	594.789524	1187.56449	0.55995	0.00033305	-0.21544	-0.00012814	0.34451	0.00020491	594.7894357937603	42.155	0.6352	42.24	41.983	42.618	0.085197					67	22	4	0	0	0	0.0024096	1	9141	9141		106.94	57.007	1	1937100			3708	428	1893	1893	4799	4799		42			-0.02178535608322818
AYIERMNYI	9	Oxidation (M)	_AYIERM(Oxidation (M))NYI_		AYIERM(1)NYI		AYIERM(120)NYI	0	0	1		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;ENSG00000176105|ENST00000314574|YES1	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.7899169921875	2	594.789524	1187.56449	0.53498	0.0003182	-0.12466	-7.4146E-05	0.41032	0.00024405	594.7894650410896	42.1	0.81533	42.191	41.929	42.744	0.091362					66	28	4	0	0	0	0.0010968	2	9117	9117;9169		121.53	75.834	1	2225100			3709	428	1893	1893	4800;4801	4800		42			-0.02178535608322818
AYIERMNYI	9	Oxidation (M)	_AYIERM(Oxidation (M))NYI_					0	0	1		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;ENSG00000176105|ENST00000314574|YES1	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	594.789524	1187.56449	0.30027	0.0001786	0.5279	0.00031399	0.82817	0.00049259	594.7901502229149	42.692	0.24319	42.778	42.618	42.861	0.085197	0.13407	0.00026299	NaN	133.05	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97832			3710	428	1893	1893				42			-0.02178535608322818
AYIGFIQSL	9	Unmodified	_AYIGFIQSL_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2791748046875	2	506.279118	1010.54368	0.2974	0.00015057	-0.47405	-0.00024	-0.17665	-8.9436E-05	506.2790265002368	80.186	0.76043	80.186	79.897	80.657	0					65	27	3	0	0	0	0.0028626	3	20820	20820;20873;20917		103.35	41.996	1	493990			3711	3097	1894	1894	4802;4803;4804	4802					0.03883242074334703
AYIGFIQSL	9	Unmodified	_AYIGFIQSL_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.279296875	2	506.279118	1010.54368	0.24265	0.00012285	-0.13342	-6.7547E-05	0.10923	5.5302E-05	506.27902412278524	80.115	0.65379	80.178	79.918	80.572	0.062523					60	24	3	0	0	0	0.0028626	1	20788	20788		103.35	51.085	1	564320			3712	3097	1894	1894	4805	4805					0.03883242074334703
AYIGFIQSL	9	Unmodified	_AYIGFIQSL_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2791748046875	2	506.279118	1010.54368	0.30779	0.00015583	-0.37549	-0.0001901	-0.067705	-3.4278E-05	506.2790805705236	80.236	0.60236	80.209	79.949	80.552	-0.026817					53	20	3	0	0	0	0.0028626	2	20835	20835;20890		103.35	41.996	1	538040			3713	3097	1894	1894	4806;4807	4806					0.03883242074334703
AYIIDSPGGF	10	Unmodified	_AYIIDSPGGF_					0	0	0			REV__ENSG00000183476|ENST00000328828|SH2D7	REV__ENSG00000183476|ENST00000328828|SH2D7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.8211669921875	2	520.258382	1038.50221	0.31783	0.00016536	-1.4505	-0.00075461	-1.1326	-0.00058926	520.7587714895751	69.063	0.51212	69.044	68.843	69.355	-0.019157					28	17	2	0	0	0	0.2291	1	17479	17479		19.257	7.0163	1	186900	+		3714	18265	1895	1895	4808	4808					-0.015499386849796792
AYIKKTVRAQ	10	Unmodified	_AYIKKTVRAQ_					0	0	0		L1PB1_dup998|chr2:34715538-34720489:-|4.098121381973527|0.252296353110605|4.02|532.0|95|2|sense	L1PB1_dup998|chr2:34715538-34720489:-|4.098121381973527|0.252296353110605|4.02|532.0|95|2|sense	L1PB1_dup998|chr2:34715538-34720489:-|4.098121381973527|0.252296353110605|4.02|532.0|95|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3428955078125	2	589.356222	1176.69789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.068	1	97.068	96.568	97.568	0								0	0	0	0.3749	1	25950	25950		4.3292	0.73274	1				3715	12495	1896	1896	4809	4809					0.11661071559728953
AYILDTLVF	9	Unmodified	_AYILDTLVF_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7947387695312	2	527.794601	1053.57465	0.43926	0.00023184	-0.36447	-0.00019236	0.074794	3.9476E-05	527.794491052801	92.531	1.1714	92.531	92.204	93.375	0					201	94	4	0	0	0	6.8028E-05	3	24620	24581;24620;24658		146.01	71.585	1	2092400			3716	1219	1897	1897	4810;4811;4812	4811					0.05000395388583456
AYILDTLVF	9	Unmodified	_AYILDTLVF_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7945556640625	2	527.794601	1053.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.317	1	92.407	91.907	92.907	0.089195								0	0	0	2.574E-06	1	24543	24543		117.6	54.036	1				3717	1219	1897	1897	4813	4813					0.05000395388583456
AYILDTLVF	9	Unmodified	_AYILDTLVF_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7947998046875	2	527.794601	1053.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.464	1	92.553	92.053	93.053	0.089195								0	0	0	1.0182E-10	1	24589	24589		146.01	71.611	1				3718	1219	1897	1897	4814	4814					0.05000395388583456
AYILDTLVF	9	Unmodified	_AYILDTLVF_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7947387695312	2	527.794601	1053.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.419	1	92.419	91.919	92.919	0.00046539								0	0	0	2.574E-06	1	24574	24574		117.6	54.036	1				3719	1219	1897	1897	4815	4815					0.05000395388583456
AYILDTLVF	9	Unmodified	_AYILDTLVF_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.794677734375	2	527.794601	1053.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.56	1	92.56	92.06	93.06	0.00046539								0	0	0	1.0182E-10	1	24618	24618		146.01	71.611	1				3720	1219	1897	1897	4816	4816					0.05000395388583456
AYILLEPAK	9	Unmodified	_AYILLEPAK_					0	0	0			REV__nc|ENSG00000239819|A0A087WSZ0|IGKV1D-8	REV__nc|ENSG00000239819|A0A087WSZ0|IGKV1D-8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7877197265625	2	509.302593	1016.59063	0.17243	8.7819E-05	-1.7665	-0.00089967	-1.594	-0.00081185	509.80435975601404	23.646	0.25416	23.574	23.474	23.728	-0.072559					13	8	2	0	0	0	0.27532	1	3497	3497		12.532	0.89125	1	19726	+		3721	23208	1898	1898	4817	4817					0.08300101625457046
AYINKVEEL	9	Unmodified	_AYINKVEEL_					0	0	0		ENSG00000155368|ENST00000355857|DBI;nc|ENSG00000155368|P07108-3|DBI;nc|ENSG00000155368|P07108-2|DBI;nc|ENSG00000155368|P07108-4|DBI;nc|ENSG00000155368|P07108-5|DBI	ENSG00000155368|ENST00000355857|DBI	ENSG00000155368|ENST00000355857|DBI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.79248046875	2	539.792589	1077.57063	0.51587	0.00027847	-0.41115	-0.00022193	0.10473	5.6532E-05	539.7921909903523	44.938	0.41121	45.007	44.651	45.062	0.068569					32	14	3	0	0	0	0.0010968	1	10001	10001		121.53	25.168	1	1827600			3722	5173	1899	1899	4818	4818					0.03494305894855643
AYINKVEEL	9	Unmodified	_AYINKVEEL_					0	0	0		ENSG00000155368|ENST00000355857|DBI;nc|ENSG00000155368|P07108-3|DBI;nc|ENSG00000155368|P07108-2|DBI;nc|ENSG00000155368|P07108-4|DBI;nc|ENSG00000155368|P07108-5|DBI	ENSG00000155368|ENST00000355857|DBI	ENSG00000155368|ENST00000355857|DBI	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.792236328125	2	539.792589	1077.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.988	1	45.063	44.563	45.563	0.075047								0	0	0	2.1359E-06	1	10008	10008		121.53	14.594	1				3723	5173	1899	1899	4819	4819					0.03494305894855643
AYINRASLL	9	Unmodified	_AYINRASLL_					0	0	0		nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.795654296875	2	510.795466	1019.57638	0.64815	0.00033107	-0.023321	-1.1912E-05	0.62483	0.00031916	510.79537666471384	47.046	0.48912	47.046	46.813	47.302	0					42	16	3	0	0	0	0.0024096	2	10643	10643;10693		106.94	49.218	1	3169800			3724	4175	1900	1900	4820;4821	4820					0.06737449197191836
AYINRASLL	9	Unmodified	_AYINRASLL_					0	0	0		nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.7956848144531	2	510.795466	1019.57638	0.30677	0.00015669	0.47462	0.00024244	0.78139	0.00039913	510.79563834969406	46.978	0.50579	47.031	46.737	47.243	0.052574					44	18	3	0	0	0	0.00078391	2	10614	10614;10663		125.53	61.569	1	3090800			3725	4175	1900	1900	4822;4823	4822					0.06737449197191836
AYINRASLL	9	Unmodified	_AYINRASLL_					0	0	0		nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.7956237792969	2	510.795466	1019.57638	0.74077	0.00037838	0.016391	8.3727E-06	0.75716	0.00038675	510.7953844621377	46.992	0.54113	47.047	46.768	47.309	0.054375					44	18	3	0	0	0	0.00078391	2	10620	10620;10667		125.53	61.569	1	3333800			3726	4175	1900	1900	4824;4825	4824					0.06737449197191836
AYIPLNNYL	9	Unmodified	_AYIPLNNYL_					0	0	0		ENSG00000144744|ENST00000361055|UBA3;nc|ENSG00000144744|Q8TBC4-2|UBA3	ENSG00000144744|ENST00000361055|UBA3	ENSG00000144744|ENST00000361055|UBA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7899169921875	2	540.78985	1079.56515	0.74986	0.00040552	-0.54691	-0.00029576	0.20295	0.00010975	540.789835348372	74.845	0.66084	74.845	74.679	75.339	0					35	23	3	0	0	0	0.017871	1	19209	19209		67.344	43.323	1	473290			3727	4609	1901	1901	4826	4826					0.028546271030108983
AYIPLNNYL	9	Unmodified	_AYIPLNNYL_					0	0	0		ENSG00000144744|ENST00000361055|UBA3;nc|ENSG00000144744|Q8TBC4-2|UBA3	ENSG00000144744|ENST00000361055|UBA3	ENSG00000144744|ENST00000361055|UBA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3162231445312	2	540.78985	1079.56515	0.50076	0.0002708	-0.20752	-0.00011223	0.29323	0.00015858	540.7898199218528	74.849	0.48791	74.901	74.671	75.159	0.052361					35	17	3	0	0	0	0.21137	1	19230	19230		24.674	5.4169	1	497440			3728	4609	1901	1901	4827	4827					0.028546271030108983
AYIPLNNYL	9	Unmodified	_AYIPLNNYL_					0	0	0		ENSG00000144744|ENST00000361055|UBA3;nc|ENSG00000144744|Q8TBC4-2|UBA3	ENSG00000144744|ENST00000361055|UBA3	ENSG00000144744|ENST00000361055|UBA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3163452148438	2	540.78985	1079.56515	0.85224	0.00046088	-0.63202	-0.00034179	0.22022	0.00011909	540.7896081346977	74.911	0.45915	74.879	74.7	75.159	-0.031487					35	16	3	0	0	0	0.21905	1	19268	19268		23.148	9.2424	1	522790			3729	4609	1901	1901	4828	4828					0.028546271030108983
AYIPTPIYF	9	Unmodified	_AYIPTPIYF_					0	0	0		nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1;ENSG00000137571|ENST00000260126|SLCO5A1	nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1	nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.789794921875	2	542.789318	1083.56408	0.74761	0.00040579	0.2822	0.00015318	1.0298	0.00055897	542.7893354471663	83.612	0.48596	83.612	83.373	83.859	0					41	17	3	0	0	0	0.0084096	2	21858	21858;21931		81.864	13.477	1	275350			3730	4060	1902	1902	4829;4830	4829					0.025644127341365675
AYIPTPIYF	9	Unmodified	_AYIPTPIYF_					0	0	0		nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1;ENSG00000137571|ENST00000260126|SLCO5A1	nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1	nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7896118164062	2	542.789318	1083.56408	0.71171	0.00038631	0.20282	0.00011009	0.91453	0.0004964	542.7894183714476	83.472	0.52016	83.549	83.352	83.873	0.077095					47	20	3	0	0	0	0.048175	1	21830	21830		53.576	9.1686	1	314850			3731	4060	1902	1902	4831	4831					0.025644127341365675
AYIPTPIYF	9	Unmodified	_AYIPTPIYF_					0	0	0		nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1;ENSG00000137571|ENST00000260126|SLCO5A1	nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1	nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.7899169921875	2	542.789318	1083.56408	0.78291	0.00042496	0.17754	9.6369E-05	0.96046	0.00052133	542.7893304170955	83.624	0.51032	83.607	83.346	83.856	-0.016823					45	21	3	0	0	0	0.0084096	1	21864	21864		81.864	11.149	1	344820			3732	4060	1902	1902	4832	4832					0.025644127341365675
AYIQEFQEF	9	Unmodified	_AYIQEFQEF_					0	0	0		ENST00000528308.1_1_11:7507082-7509735:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528308.1_1_11:7507082-7509735:+|nuORF	ENST00000528308.1_1_11:7507082-7509735:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.7745361328125	2	587.774396	1173.53424	0.29109	0.0001711	-0.17905	-0.00010524	0.11204	6.5853E-05	587.774328089126	69.905	0.97337	69.905	69.566	70.54	0					131	35	5	0	0	0	9.0795E-24	3	17707	17660;17707;17758		232.37	118.17	1	3320100			3733	7409	1903	1903	4833;4834;4835	4834					-0.045585710018713144
AYIQEFQEF	9	Unmodified	_AYIQEFQEF_					0	0	0		ENST00000528308.1_1_11:7507082-7509735:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528308.1_1_11:7507082-7509735:+|nuORF	ENST00000528308.1_1_11:7507082-7509735:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.7745361328125	2	587.774396	1173.53424	0.22188	0.00013041	-0.17481	-0.00010275	0.047068	2.7665E-05	587.7743409145676	69.846	1.2363	69.912	69.459	70.696	0.066048					127	43	5	0	0	0	1.0985E-11	3	17696	17647;17696;17743		199.75	110.35	1	2822800			3734	7409	1903	1903	4836;4837;4838	4837					-0.045585710018713144
AYIQEFQEF	9	Unmodified	_AYIQEFQEF_					0	0	0		ENST00000528308.1_1_11:7507082-7509735:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528308.1_1_11:7507082-7509735:+|nuORF	ENST00000528308.1_1_11:7507082-7509735:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.7743530273438	2	587.774396	1173.53424	0.33324	0.00019587	-0.2593	-0.00015241	0.07394	4.346E-05	587.7742583439307	69.935	1.0124	69.913	69.539	70.552	-0.022087					106	36	4	0	0	0	8.7734E-17	3	17708	17658;17708;17754		216.57	102.36	1	3102900			3735	7409	1903	1903	4839;4840;4841	4840					-0.045585710018713144
AYIQESATF	9	Unmodified	_AYIQESATF_					0	0	0		ENST00000497302.1_1_1:12042112-12052340:+|nuORF;ENSG00000116688|ENST00000235329|MFN2	ENST00000497302.1_1_1:12042112-12052340:+|nuORF	ENST00000497302.1_1_1:12042112-12052340:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.310791015625	2	515.248015	1028.48148	0.40408	0.0002082	1.0056	0.00051813	1.4097	0.00072633	515.2485047108463	52.977	0.48376	52.977	52.717	53.201	0					40	17	3	0	0	0	0.0063009	1	12473	12473		89.401	54.999	1	1126600			3736	2741	1904	1904	4842	4842					-0.03162529064661612
AYIQESATF	9	Unmodified	_AYIQESATF_					0	0	0		ENST00000497302.1_1_1:12042112-12052340:+|nuORF;ENSG00000116688|ENST00000235329|MFN2	ENST00000497302.1_1_1:12042112-12052340:+|nuORF	ENST00000497302.1_1_1:12042112-12052340:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.310791015625	2	515.248015	1028.48148	0.5331	0.00027468	1.2411	0.00063946	1.7742	0.00091414	515.2486403716692	52.896	0.5833	52.946	52.711	53.294	0.050571					50	20	3	0	0	0	0.0063009	1	12468	12468		89.401	54.999	1	1053700			3737	2741	1904	1904	4843	4843					-0.03162529064661612
AYIQQNVSF	9	Unmodified	_AYIQQNVSF_					0	0	0		ENSG00000139370|ENST00000266771|SLC15A4;SLC15A4|p.G462Wfs*65|1|0.36|ENSG00000139370|chr12:128800884-128800885|-/A|frameshift_variant	ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.3059692382812	2	535.269281	1068.52401	1.194	0.00063912	-0.50387	-0.0002697	0.69016	0.00036942	535.2689667045676	56.072	0.7399	56.072	55.732	56.471	0					43	26	2	0	0	0	0.067563	1	13407	13407		66.457	37.375	1	4004000			3738	4233	1905	1905	4844	4844					-0.007511339364327796
AYIQQNVSF	9	Unmodified	_AYIQQNVSF_					0	0	0		ENSG00000139370|ENST00000266771|SLC15A4;SLC15A4|p.G462Wfs*65|1|0.36|ENSG00000139370|chr12:128800884-128800885|-/A|frameshift_variant	ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.3056640625	2	535.269281	1068.52401	0.83928	0.00044924	-0.089783	-4.8058E-05	0.74949	0.00040118	535.2691569706836	56.018	0.64935	56.089	55.828	56.477	0.070885					42	23	2	0	0	0	0.20881	1	13355	13355		21.537	2.28	1	3269000			3739	4233	1905	1905	4845	4845					-0.007511339364327796
AYIQQNVSF	9	Unmodified	_AYIQQNVSF_					0	0	0		ENSG00000139370|ENST00000266771|SLC15A4;SLC15A4|p.G462Wfs*65|1|0.36|ENSG00000139370|chr12:128800884-128800885|-/A|frameshift_variant	ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.3056640625	2	535.269281	1068.52401	1.0469	0.00056035	0.12848	6.8772E-05	1.1753	0.00062912	535.2691352018322	56.235	0.54103	56.216	55.915	56.456	-0.019077					36	19	2	0	0	0	0.067563	1	13444	13444		66.457	35.82	1	3254300			3740	4233	1905	1905	4846	4846					-0.007511339364327796
AYISRGELL	9	Unmodified	_AYISRGELL_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3;TMTC3|p.N621Sfs*8|1|0.03|ENSG00000139324|chr12:88192757-88192758|-/TCGAA|frameshift_variant	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.7434387207031	2	511.287474	1020.5604	0.35501	0.00018151	-0.9854	-0.00050382	-0.63038	-0.00032231	511.28735647267484	46.571	0.86396	46.624	46.091	46.955	0.052574					60	31	3	0	0	0	0.23783	1	10603	10603		18.135	2.2878	1	664220			3741	4229	1906	1906	4847	4847					0.050937429602981865
AYISRGELL	9	Unmodified	_AYISRGELL_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3;TMTC3|p.N621Sfs*8|1|0.03|ENSG00000139324|chr12:88192757-88192758|-/TCGAA|frameshift_variant	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.7433166503906	2	511.287474	1020.5604	0.12603	6.4439E-05	-1.0606	-0.00054226	-0.93454	-0.00047782	511.2873220754058	46.593	0.89634	46.647	46.11	47.006	0.054371					69	31	4	0	0	0	0.22596	1	10610	10610		21.747	3.6117	1	777940			3742	4229	1906	1906	4848	4848					0.050937429602981865
AYIVKNKPV	9	Unmodified	_AYIVKNKPV_					0	0	0		nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B;nc|ENSG00000182168|O95185-2|UNC5C;ENSG00000182168|ENST00000453304|UNC5C	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.766845703125	2	516.316035	1030.61752	0.28631	0.00014782	0.17983	9.2851E-05	0.46614	0.00024068	516.3159929994739	37.373	0.80534	37.466	37.197	38.002	0.093018					63	29	3	0	0	0	0.25417	1	7830	7830		8.5933	1.8701	1	386030			3743	2141	1907	1907	4849	4849					0.10343210236646883
AYIVKNKPV	9	Unmodified	_AYIVKNKPV_					0	0	0		nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B;nc|ENSG00000182168|O95185-2|UNC5C;ENSG00000182168|ENST00000453304|UNC5C	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	516.316035	1030.61752	0.72866	0.00037622	-0.060392	-3.1182E-05	0.66827	0.00034504	516.3158116624479	37.458	0.74503	37.458	37.181	37.926	0	-0.003676	-0.00019628	NaN	8.5933	61	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462460			3744	2141	1907	1907							0.10343210236646883
AYKDAIYVF	9	Unmodified	_AYKDAIYVF_					0	0	0		LZTR1|p.C566Afs*26|1|0.36|ENSG00000099949|chr22:20994638-20994638|T/-|frameshift_variant;ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	LZTR1|p.C566Afs*26|1|0.36|ENSG00000099949|chr22:20994638-20994638|T/-|frameshift_variant	LZTR1|p.C566Afs*26|1|0.36|ENSG00000099949|chr22:20994638-20994638|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7926635742188	2	545.2844	1088.55425	0.43426	0.0002368	0.53391	0.00029113	0.96817	0.00052793	545.2844630154202	57.879	0.61078	57.879	57.605	58.216	0					52	21	4	0	0	0	0.12563	1	13953	13953		39.95	15.929	1	1897200			3745	1506	1908	1908	4850	4850					0.013512247287508217
AYKDAIYVF	9	Unmodified	_AYKDAIYVF_					0	0	0		LZTR1|p.C566Afs*26|1|0.36|ENSG00000099949|chr22:20994638-20994638|T/-|frameshift_variant;ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	LZTR1|p.C566Afs*26|1|0.36|ENSG00000099949|chr22:20994638-20994638|T/-|frameshift_variant	LZTR1|p.C566Afs*26|1|0.36|ENSG00000099949|chr22:20994638-20994638|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7926025390625	2	545.2844	1088.55425	0.62667	0.00034171	0.17863	9.7405E-05	0.8053	0.00043912	545.2843448275024	57.639	0.56736	57.724	57.544	58.112	0.085621					49	20	3	0	0	0	0.12563	1	13889	13889		32.786	8.7651	1	1625800			3746	1506	1908	1908	4851	4851					0.013512247287508217
AYKDAIYVF	9	Unmodified	_AYKDAIYVF_					0	0	0		LZTR1|p.C566Afs*26|1|0.36|ENSG00000099949|chr22:20994638-20994638|T/-|frameshift_variant;ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	LZTR1|p.C566Afs*26|1|0.36|ENSG00000099949|chr22:20994638-20994638|T/-|frameshift_variant	LZTR1|p.C566Afs*26|1|0.36|ENSG00000099949|chr22:20994638-20994638|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2850341796875	2	545.2844	1088.55425	0.69058	0.00037656	0.29333	0.00015995	0.98391	0.00053651	545.2843907758488	57.986	0.55975	57.969	57.716	58.275	-0.0172					51	20	3	0	0	0	0.05341	1	14032	14032		51.63	1.6968	1	1777800			3747	1506	1908	1908	4852	4852					0.013512247287508217
AYKFGKTV	8	Unmodified	_AYKFGKTV_					0	0	0		ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7929382324219	2	457.260728	912.506903	-0.0054359	-2.4856E-06	-0.28346	-0.00012961	-0.28889	-0.0001321	457.26029051223486	33.603	0.80558	33.67	33.215	34.021	0.066704					49	28	3	0	0	0	0.18654	1	6499	6499		57.722	27.497	1	335280			3748	3736	1909	1909	4853	4853					0.04714990248430695
AYKITKHYSG	10	Unmodified	_AYKITKHYSG_					0	0	0			REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.356689453125	2	584.31148	1166.60841	0.43124	0.00025198	-2.7856	-0.0016277	-2.3544	-0.0013757	584.3104793112266	83.45	0.24875	83.527	83.404	83.652	0.077095					13	8	3	0	0	0	0.31358	1	21792	21792		13.906	5.1606	1	92109	+		3749	13140	1910	1910	4854	4854					0.03176816880318256
AYKKTHETL	9	Unmodified	_AYKKTHETL_					0	0	0		nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-2|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;nc|ENSG00000111907|Q16890-5|TPD52L1;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;ENSG00000111907|ENST00000534000|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.808837890625	2	545.798206	1089.58186	0.13025	7.1091E-05	0.28504	0.00015557	0.41529	0.00022666	545.7986886464101	13.7	0.14347	13.7	13.597	13.74	0					10	4	3	0	0	0	0.014206	1	512	512		72.968	11.366	1	120680			3750	2402	1911	1911	4855	4855					0.04065127988997119
AYKKTHETL	9	Unmodified	_AYKKTHETL_					0	0	0		nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-2|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;nc|ENSG00000111907|Q16890-5|TPD52L1;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;ENSG00000111907|ENST00000534000|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.808837890625	2	545.798206	1089.58186	0.20785	0.00011344	0.033722	1.8406E-05	0.24157	0.00013185	545.7983161594216	13.803	0.11001	13.698	13.603	13.713	-0.10466					6	3	2	0	0	0	0.0073901	1	539	539		83.429	25.707	1	98567			3751	2402	1911	1911	4856	4856					0.04065127988997119
AYKKTHETL	9	Unmodified	_AYKKTHETL_					0	0	0		nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-2|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;nc|ENSG00000111907|Q16890-5|TPD52L1;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;ENSG00000111907|ENST00000534000|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	545.798206	1089.58186	0.21489	0.00011729	-0.26725	-0.00014586	-0.052357	-2.8576E-05	545.7984764442552	13.797	0.14548	13.731	13.602	13.747	-0.066068	0.020962	-0.00029109	NaN	83.429	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124020			3752	2402	1911	1911							0.04065127988997119
AYKRQVTL	8	Unmodified	_AYKRQVTL_					0	0	0			REV__ENST00000505658.5_1_17:48828064-48828295:+|nuORF	REV__ENST00000505658.5_1_17:48828064-48828295:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2693786621094	2	489.790184	977.565815	0.15916	7.7956E-05	0.088549	4.3371E-05	0.24771	0.00012133	489.7903415139887	25.717	0.42129	25.717	25.533	25.955	0					24	14	3	0	0	0	0.34272	1	4199	4199		7.9102	0	1	180310	+		3753	21743	1912	1912	4857	4857					0.07613466542750302
AYKRQVTL	8	Unmodified	_AYKRQVTL_					0	0	0			REV__ENST00000505658.5_1_17:48828064-48828295:+|nuORF	REV__ENST00000505658.5_1_17:48828064-48828295:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	489.790184	977.565815	0.043607	2.1358E-05	-0.10976	-5.3759E-05	-0.066153	-3.2401E-05	489.7901706378766	25.765	0.37133	25.726	25.5	25.871	-0.038671	-0.018908	-6.4018E-07	NaN	7.9102	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156240	+		3754	21743	1912	1912							0.07613466542750302
AYKRQVTL	8	Unmodified	_AYKRQVTL_					0	0	0			REV__ENST00000505658.5_1_17:48828064-48828295:+|nuORF	REV__ENST00000505658.5_1_17:48828064-48828295:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	489.790184	977.565815	0.1192	5.8385E-05	-0.23645	-0.00011581	-0.11725	-5.7427E-05	489.7902341166708	25.815	0.41723	25.793	25.552	25.97	-0.022236	0.047156	-0.00012475	NaN	7.9102	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165180	+		3755	21743	1912	1912							0.07613466542750302
AYLASHHRL	9	Unmodified	_AYLASHHRL_					0	0	0		nc|ENSG00000293317|Q9H963|ZNF702P	nc|ENSG00000293317|Q9H963|ZNF702P	nc|ENSG00000293317|Q9H963|ZNF702P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2887573242188	2	534.290882	1066.56721	0.3998	0.00021361	-2.3961	-0.0012802	-1.9963	-0.0010666	534.2896097737627	63.107	0.50985	63.202	62.88	63.39	0.095722					29	18	2	0	0	0	0.16283	1	15627	15627		29.082	3.6823	1	398600			3756	13019	1913	1913	4858	4858					0.03659100631512047
AYLASHHRL	9	Unmodified	_AYLASHHRL_					0	0	0		nc|ENSG00000293317|Q9H963|ZNF702P	nc|ENSG00000293317|Q9H963|ZNF702P	nc|ENSG00000293317|Q9H963|ZNF702P	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	534.290882	1066.56721	0.51075	0.00027289	-2.0423	-0.0010912	-1.5316	-0.0008183	534.2896637124408	63.177	0.45925	63.177	62.984	63.443	0	0.0047179	6.4847E-05	NaN	29.082	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	426520			3757	13019	1913	1913							0.03659100631512047
AYLASHHRL	9	Unmodified	_AYLASHHRL_					0	0	0		nc|ENSG00000293317|Q9H963|ZNF702P	nc|ENSG00000293317|Q9H963|ZNF702P	nc|ENSG00000293317|Q9H963|ZNF702P	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	534.290882	1066.56721	0.4716	0.00025197	-2.0261	-0.0010825	-1.5545	-0.00083055	534.2896384952935	63.145	0.49126	63.137	62.86	63.351	-0.0085526	-0.035065	8.2186E-05	NaN	29.082	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	464780			3758	13019	1913	1913							0.03659100631512047
AYLATVSLAY	10	Unmodified	_AYLATVSLAY_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.8599853515625	2	536.289682	1070.56481	0.39221	0.00021034	-0.3999	-0.00021446	-0.0076959	-4.1272E-06	536.2886483674077	53.991	0.44525	54.049	53.767	54.213	0.05732					31	16	3	0	0	0	0.28434	1	12759	12759		19.257	0	1	441920	+		3759	14737	1914	1914	4859	4859					0.03235207383158922
AYLDAIIHVN	10	Unmodified	_AYLDAIIHVN_					0	0	0			REV__FRYL|p.E2601Dfs*12|1|0.03|ENSG00000075539|chr4:48515162-48515163|-/TACTTTCA|frameshift_variant	REV__FRYL|p.E2601Dfs*12|1|0.03|ENSG00000075539|chr4:48515162-48515163|-/TACTTTCA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.2958374023438	2	564.806031	1127.59751	0.65483	0.00036985	3.7976	0.0021449	4.4524	0.0025148	564.8082359136062	54.82	0.48357	54.82	54.578	55.061	0					25	17	2	0	0	0	0.27772	1	13020	13020		26.884	7.6267	1	471310	+		3760	13814	1915	1915	4860	4860					0.038814145060541705
AYLDKSPQF	9	Unmodified	_AYLDKSPQF_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;DHX29|p.K899Ifs*3|1|0.22|ENSG00000067248|chr5:55273372-55273373|-/TA|frameshift_variant;ENST00000513447.1_1_5:54569247-54572159:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.77197265625	2	534.771657	1067.52876	0.44795	0.00023955	0.32473	0.00017366	0.77268	0.00041321	534.7717419903307	44.052	1.8374	44.052	42.902	44.739	0					154	67	4	0	0	0	0.00010125	3	9717	9670;9717;9765		140.63	78.06	1	2554300			3761	863	1916	1916	4861;4862;4863	4862					-0.0023024979368528875
AYLDKSPQF	9	Unmodified	_AYLDKSPQF_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;DHX29|p.K899Ifs*3|1|0.22|ENSG00000067248|chr5:55273372-55273373|-/TA|frameshift_variant;ENST00000513447.1_1_5:54569247-54572159:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.77197265625	2	534.771657	1067.52876	0.35088	0.00018764	0.49169	0.00026294	0.84258	0.00045059	534.7718160365584	43.797	1.0713	43.874	43.425	44.497	0.077515					112	39	4	0	0	0	0.00010125	4	9670	9574;9623;9670;9720		140.63	89.003	1	3041400			3762	863	1916	1916	4864;4865;4866;4867	4866					-0.0023024979368528875
AYLDKSPQF	9	Unmodified	_AYLDKSPQF_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;DHX29|p.K899Ifs*3|1|0.22|ENSG00000067248|chr5:55273372-55273373|-/TA|frameshift_variant;ENST00000513447.1_1_5:54569247-54572159:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7718505859375	2	534.771657	1067.52876	0.50511	0.00027012	0.27932	0.00014937	0.78443	0.00041949	534.7717019937096	43.774	1.2366	43.858	43.19	44.427	0.083996					113	45	4	0	0	0	0.00051734	3	9607	9559;9607;9660		128.93	78.999	1	3087800			3763	863	1916	1916	4868;4869;4870	4869					-0.0023024979368528875
AYLDSTERF	9	Unmodified	_AYLDSTERF_					0	0	0		ENSG00000166266|ENST00000393094|CUL5;CUL5|p.F273*|1|0.14|ENSG00000166266|chr11:108070131-108070132|AT/-|frameshift_variant	ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2646484375	2	551.264196	1100.51384	0.57868	0.00031901	0.74136	0.00040869	1.32	0.00072769	551.2644329336736	44.333	0.74801	44.401	44.119	44.867	0.068569					67	27	4	0	0	0	0.011693	1	9785	9785		76.825	36.376	1	1330100			3764	6054	1917	1917	4871	4871					-0.03239741661673179
AYLDSTERF	9	Unmodified	_AYLDSTERF_					0	0	0		ENSG00000166266|ENST00000393094|CUL5;CUL5|p.F273*|1|0.14|ENSG00000166266|chr11:108070131-108070132|AT/-|frameshift_variant	ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	551.264196	1100.51384	0.60851	0.00033545	0.50278	0.00027716	1.1113	0.00061262	551.2644368360426	44.586	0.60818	44.586	44.383	44.991	0	0.16157	-0.0002288	NaN	76.825	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1232000			3765	6054	1917	1917							-0.03239741661673179
AYLDSTERF	9	Unmodified	_AYLDSTERF_					0	0	0		ENSG00000166266|ENST00000393094|CUL5;CUL5|p.F273*|1|0.14|ENSG00000166266|chr11:108070131-108070132|AT/-|frameshift_variant	ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	551.264196	1100.51384	0.40083	0.00022096	0.96232	0.00053049	1.3631	0.00075145	551.2645440645557	44.211	0.62843	44.286	44.094	44.723	0.075047	-0.13817	0.00027785	NaN	76.825	58	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1214900			3766	6054	1917	1917							-0.03239741661673179
AYLEAHETF	9	Unmodified	_AYLEAHETF_					0	0	0		nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-2|NUP107	nc|ENSG00000111581|P57740-2|NUP107	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.75390625	2	540.753464	1079.49238	0.43041	0.00023275	0.32002	0.00017305	0.75043	0.0004058	540.7536182096226	43.756	0.99523	43.756	43.441	44.436	0					92	36	5	0	0	0	3.327E-09	2	9623	9623;9673		180.01	133.99	1	7018900			3767	12649	1918	1918	4872;4873	4872					-0.0441912669039084
AYLEAHETF	9	Unmodified	_AYLEAHETF_					0	0	0		nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-2|NUP107	nc|ENSG00000111581|P57740-2|NUP107	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7537841796875	2	540.753464	1079.49238	0.60878	0.0003292	0.043859	2.3717E-05	0.65264	0.00035292	540.7534585620384	43.411	1.1521	43.488	43.206	44.358	0.077515					103	42	4	0	0	0	3.327E-09	2	9550	9510;9550		180.01	135.6	1	6911900			3768	12649	1918	1918	4874;4875	4875					-0.0441912669039084
AYLEAHETF	9	Unmodified	_AYLEAHETF_					0	0	0		nc|ENSG00000111581|P57740-2|NUP107;nc|ENSG00000111581|P57740-3|NUP107;ENSG00000111581|ENST00000229179|NUP107	nc|ENSG00000111581|P57740-2|NUP107	nc|ENSG00000111581|P57740-2|NUP107	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7538452148438	2	540.753464	1079.49238	0.62452	0.00033771	0.11389	6.1587E-05	0.73841	0.0003993	540.7534683640592	43.412	0.83207	43.496	43.217	44.049	0.083996					108	30	5	0	0	0	4.0037E-07	2	9501	9501;9544		164.52	120.66	1	6355700			3769	12649	1918	1918	4876;4877	4876					-0.0441912669039084
AYLEAIHNF	9	Unmodified	_AYLEAIHNF_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.272216796875	2	539.271824	1076.5291	0.81895	0.00044164	0.86694	0.00046752	1.6859	0.00090915	539.2723337759802	54.637	1.135	54.637	54.296	55.431	0					91	41	5	0	0	0	6.1879E-11	2	12945	12945;12990		183.04	137.02	1	13569000			3770	614	1919	1919	4878;4879	4878					-0.006108300738333128
AYLEAIHNF	9	Unmodified	_AYLEAIHNF_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2722778320312	2	539.271824	1076.5291	0.72565	0.00039132	0.68224	0.00036791	1.4079	0.00075923	539.2722666572746	54.558	1.4716	54.621	54.272	55.744	0.063206					109	54	5	0	0	0	1.0663E-16	2	12970	12920;12970		214.41	170.55	1	13812000			3771	614	1919	1919	4880;4881	4881					-0.006108300738333128
AYLEAIHNF	9	Unmodified	_AYLEAIHNF_					0	0	0		ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.272216796875	2	539.271824	1076.5291	0.8732	0.00047089	1.602	0.0008639	2.4752	0.0013348	539.2727760977838	54.85	1.4474	54.834	54.251	55.699	-0.015923					92	52	5	0	0	0	2.942E-07	2	13014	13014;13057		168.66	106.09	1	14470000			3772	614	1919	1919	4882;4883	4882					-0.006108300738333128
AYLEAYKEF	9	Unmodified	_AYLEAYKEF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2796020507812	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.914	1	52.914	52.414	53.414	0								0	0	0	3.4884E-11	1	12457	12457		157.8	82.034	1				3773	4211	1920	1920	4884	4884					-0.01689382996482891
AYLEAYKEF	9	Unmodified	_AYLEAYKEF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2799682617188	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.926	1	52.926	52.426	53.426	0								0	0	0	6.123E-24	1	12461	12461		187.3	111.54	1				3774	4211	1920	1920	4885	4885					-0.01689382996482891
AYLEAYKEF	9	Unmodified	_AYLEAYKEF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2800903320312	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.078	1	53.078	52.578	53.578	0								0	0	0	1.3323E-16	1	12509	12509		173.69	97.926	1				3775	4211	1920	1920	4886	4886					-0.01689382996482891
AYLEAYKEF	9	Unmodified	_AYLEAYKEF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2797241210938	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.22	1	53.22	52.72	53.72	0								0	0	0	8.8981E-11	1	12552	12552		148.27	81.811	1				3776	4211	1920	1920	4887	4887					-0.01689382996482891
AYLEAYKEF	9	Unmodified	_AYLEAYKEF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2802734375	2	567.279315	1132.54408	0.64439	0.00036555	1.0639	0.00060355	1.7083	0.0009691	567.2797347146416	52.985	1.3918	53.041	52.717	54.108	0.056255					109	51	3	0	0	0	1.6536E-07	2	12485	12485;12531		173.69	97.926	1	8937600			3777	4211	1920	1920	4888;4889	4888					-0.01689382996482891
AYLEAYKEF	9	Unmodified	_AYLEAYKEF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2801513671875	2	567.279315	1132.54408	0.33899	0.0001923	1.6512	0.0009367	1.9902	0.001129	567.2797704383553	53.31	1.3088	53.3	52.949	54.258	-0.0096054					129	48	5	0	0	0	4.8913E-11	3	12572	12517;12572;12619		187.3	111.54	1	9046800			3778	4211	1920	1920	4890;4891;4892	4891					-0.01689382996482891
AYLEQLESL	9	Unmodified	_AYLEQLESL_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2769775390625	2	533.276772	1064.53899	0.55121	0.00029395	0.49766	0.00026539	1.0489	0.00055934	533.276999326415	71.707	0.55697	71.707	71.491	72.048	0					44	19	3	0	0	0	0.0037449	1	18238	18238		96.367	23.399	1	425610			3779	1003	1921	1921	4893	4893					0.009303131409069465
AYLEQLESL	9	Unmodified	_AYLEQLESL_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2770385742188	2	533.276772	1064.53899	0.3593	0.00019161	0.50251	0.00026798	0.86181	0.00045958	533.2770457703979	71.626	0.57498	71.682	71.43	72.005	0.056572					32	20	2	0	0	0	0.0054984	1	18219	18219		86.332	21.097	1	440570			3780	1003	1921	1921	4894	4894					0.009303131409069465
AYLEQLESL	9	Unmodified	_AYLEQLESL_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.277099609375	2	533.276772	1064.53899	0.56162	0.0002995	0.29382	0.00015669	0.85543	0.00045618	533.2769765276003	71.724	0.53027	71.697	71.537	72.068	-0.027275					29	18	2	0	0	0	0.0054984	1	18244	18244		86.332	23.759	1	492170			3781	1003	1921	1921	4895	4895					0.009303131409069465
AYLESFYKF	9	Unmodified	_AYLESFYKF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2901611328125	2	584.289682	1166.56481	0.48554	0.0002837	-0.2402	-0.00014035	0.24534	0.00014335	584.289946475308	66.27	2.3511	66.27	65.899	68.25	0					232	83	6	0	0	0	4.3828E-07	6	16566	16507;16518;16566;16613;16658;16702		163.04	92.704	1	32152000			3782	5423	1922	1922	4896;4897;4898;4899;4900;4901	4898					-0.011807926168103222
AYLESFYKF	9	Unmodified	_AYLESFYKF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.290283203125	2	584.289682	1166.56481	0.43575	0.0002546	-0.21714	-0.00012687	0.21861	0.00012773	584.2899541172961	66.12	2.1452	66.204	65.86	68.006	0.083832					219	76	6	0	0	0	4.3828E-07	7	16508	16452;16466;16508;16551;16594;16642;16684		163.04	101.43	1	32181000			3783	5423	1922	1922	4902;4903;4904;4905;4906;4907;4908	4904					-0.011807926168103222
AYLESFYKF	9	Unmodified	_AYLESFYKF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.2902221679688	2	584.289682	1166.56481	0.34942	0.00020416	-0.21973	-0.00012839	0.12969	7.5776E-05	584.2899991889607	66.247	2.1539	66.233	65.919	68.073	-0.013596					223	76	4	0	0	0	8.4618E-08	6	16543	16499;16543;16586;16635;16677;16725		176.84	106.51	1	37270000			3784	5423	1922	1922	4909;4910;4911;4912;4913;4914	4910					-0.011807926168103222
AYLFLQSTF	9	Unmodified	_AYLFLQSTF_					0	0	0		nc|ENSG00000126858|Q8IXI2-5|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1	nc|ENSG00000126858|Q8IXI2-5|RHOT1	nc|ENSG00000126858|Q8IXI2-5|RHOT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3169555664062	2	545.2844	1088.55425	0.74272	0.00040499	0.39755	0.00021678	1.1403	0.00062178	545.2846358541782	83.539	0.49599	83.539	83.321	83.817	0					25	17	2	0	0	0	0.15943	1	21854	21854		39.95	14.959	1	154640			3785	3296	1923	1923	4915	4915					0.013512247287508217
AYLFLQSTF	9	Unmodified	_AYLFLQSTF_					0	0	0		nc|ENSG00000126858|Q8IXI2-5|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1	nc|ENSG00000126858|Q8IXI2-5|RHOT1	nc|ENSG00000126858|Q8IXI2-5|RHOT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3170166015625	2	545.2844	1088.55425	0.76401	0.0004166	0.65371	0.00035646	1.4177	0.00077306	545.2848519354695	83.405	0.39609	83.482	83.302	83.698	0.077095					17	14	2	0	0	0	0.17242	1	21817	21817		29.082	14.243	1	140510			3786	3296	1923	1923	4916	4916					0.013512247287508217
AYLFLQSTF	9	Unmodified	_AYLFLQSTF_					0	0	0		nc|ENSG00000126858|Q8IXI2-5|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1	nc|ENSG00000126858|Q8IXI2-5|RHOT1	nc|ENSG00000126858|Q8IXI2-5|RHOT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3169555664062	2	545.2844	1088.55425	0.80723	0.00044017	-0.19384	-0.0001057	0.61339	0.00033447	545.284275635335	83.533	0.25071	83.516	83.375	83.626	-0.016823					13	9	2	0	0	0	0.23784	1	21856	21856		19.257	8.4331	1	101410			3787	3296	1923	1923	4917	4917					0.013512247287508217
AYLHTTTTF	9	Unmodified	_AYLHTTTTF_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7639770507812	2	527.763832	1053.51311	0.24863	0.00013122	0.26545	0.00014009	0.51408	0.00027131	527.763811217602	42.318	0.985	42.318	41.969	42.954	0					79	35	3	0	0	0	1.8194E-16	3	9206	9157;9206;9254		205.82	157.47	1	3791000			3788	2221	1924	1924	4918;4919;4920	4919					-0.011505363107289668
AYLHTTTTF	9	Unmodified	_AYLHTTTTF_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7640380859375	2	527.763832	1053.51311	0.56501	0.00029819	-0.068315	-3.6054E-05	0.4967	0.00026214	527.763674297989	42.021	0.82803	42.106	41.876	42.704	0.085197					66	29	3	0	0	0	1.8194E-16	3	9131	9080;9131;9176		205.82	161.96	1	4362500			3789	2221	1924	1924	4921;4922;4923	4922					-0.011505363107289668
AYLHTTTTF	9	Unmodified	_AYLHTTTTF_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.76416015625	2	527.763832	1053.51311	0.69188	0.00036515	0.0017996	9.4977E-07	0.69368	0.0003661	527.7637250300098	41.962	0.89756	42.059	41.77	42.668	0.096626					68	31	4	0	0	0	2.2223E-07	2	9116	9063;9116		171.47	129.63	1	4441700			3790	2221	1924	1924	4924;4925	4925					-0.011505363107289668
AYLIDIKTI	9	Unmodified	_AYLIDIKTI_					0	0	0		nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;IFT172|p.E810Nfs*30|1|0.18|ENSG00000138002|chr2:27461283-27461283|C/-|frameshift_variant;ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172	nc|ENSG00000138002|Q9UG01-3|IFT172	nc|ENSG00000138002|Q9UG01-3|IFT172	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7769775390625	2	525.3157	1048.61685	0.22432	0.00011784	0.57485	0.00030198	0.79916	0.00041981	525.3161480630137	65.047	0.40882	65.047	64.884	65.293	0					27	14	2	0	0	0	0.035405	1	16207	16207		70.332	16.928	1	290210			3791	4104	1925	1925	4926	4926					0.09448370796940253
AYLIDIKTI	9	Unmodified	_AYLIDIKTI_					0	0	0		nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;IFT172|p.E810Nfs*30|1|0.18|ENSG00000138002|chr2:27461283-27461283|C/-|frameshift_variant;ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172	nc|ENSG00000138002|Q9UG01-3|IFT172	nc|ENSG00000138002|Q9UG01-3|IFT172	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.77685546875	2	525.3157	1048.61685	0.33325	0.00017506	0.77616	0.00040773	1.1094	0.00058279	525.3164660860389	64.975	0.31125	65.063	64.905	65.216	0.088882					24	11	3	0	0	0	0.035405	1	16167	16167		79.596	17.994	1	341690			3792	4104	1925	1925	4927	4927					0.09448370796940253
AYLIDIKTI	9	Unmodified	_AYLIDIKTI_					0	0	0		nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;IFT172|p.E810Nfs*30|1|0.18|ENSG00000138002|chr2:27461283-27461283|C/-|frameshift_variant;ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172	nc|ENSG00000138002|Q9UG01-3|IFT172	nc|ENSG00000138002|Q9UG01-3|IFT172	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7774047851562	2	525.3157	1048.61685	0.16663	8.7534E-05	0.55822	0.00029324	0.72485	0.00038078	525.3161804448853	65.103	0.3634	65.091	64.893	65.257	-0.011337					22	13	2	0	0	0	0.035405	1	16236	16236		70.332	16.928	1	249520			3793	4104	1925	1925	4928	4928					0.09448370796940253
AYLKDLQKL	9	Unmodified	_AYLKDLQKL_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.7880249023438	2	546.326599	1090.63865	0.48148	0.00026305	-0.98799	-0.00053977	-0.50651	-0.00027672	546.3259593187565	42.793	0.35383	42.878	42.704	43.058	0.085201					21	12	2	0	0	0	0.18022	1	9312	9312		37.075	20.926	1	329640			3794	2163	1926	1926	4929	4929					0.09695175545516577
AYLKDLQKL	9	Unmodified	_AYLKDLQKL_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	546.326599	1090.63865	0.43664	0.00023855	-0.38318	-0.00020934	0.053464	2.9209E-05	546.3262002409242	43.165	0.43243	43.165	43.008	43.441	0	0.21936	0.00015352	NaN	37.075	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281840			3795	2163	1926	1926							0.09695175545516577
AYLKFLDQF	9	Unmodified	_AYLKFLDQF_					0	0	0		nc|ENSG00000262664|Q8WZ82|OVCA2;ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF	nc|ENSG00000262664|Q8WZ82|OVCA2	nc|ENSG00000262664|Q8WZ82|OVCA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.8055419921875	2	572.8055	1143.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.308	1	72.365	71.865	72.865	0.056572								0	0	0	0.00074463	1	18417	18417		96.367	52.594	1				3796	8994	1927	1927	4930	4930					0.03039200137118314
AYLKQVLLF	9	Unmodified	_AYLKQVLLF_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.8342895507812	2	547.83406	1093.65357	0.51368	0.00028141	-1.1601	-0.00063552	-0.64638	-0.00035411	547.8338856399064	68.674	0.98413	68.674	68.329	69.313	0					69	29	4	0	0	0	0.013258	1	17319	17319		74.423	38.379	1	730560			3797	8135	1928	1928	4931	4931					0.11048667413501789
AYLKQVLLF	9	Unmodified	_AYLKQVLLF_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.834228515625	2	547.83406	1093.65357	0.55505	0.00030407	-1.284	-0.00070344	-0.72899	-0.00039937	547.8338713542124	68.618	0.64499	68.69	68.484	69.129	0.071938					60	23	3	0	0	0	0.019896	2	17290	17290;17347		64.236	35.749	1	840120			3798	8135	1928	1928	4932;4933	4932					0.11048667413501789
AYLKQVLLF	9	Unmodified	_AYLKQVLLF_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8340454101562	2	547.83406	1093.65357	0.54943	0.000301	-1.1336	-0.00062104	-0.5842	-0.00032005	547.8338369909997	68.763	0.81183	68.744	68.484	69.296	-0.01915					74	28	4	0	0	0	0.015402	1	17319	17319		71.134	42.647	1	780750			3799	8135	1928	1928	4934	4934					0.11048667413501789
AYLLFTLIF	9	Unmodified	_AYLLFTLIF_					0	0	0			REV__ENSG00000160190|ENST00000352133|SLC37A1	REV__ENSG00000160190|ENST00000352133|SLC37A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2745361328125	2	550.823161	1099.63177	0.44223	0.00024359	4.0248	0.0022169	4.467	0.0024605	550.8264416274438	62.676	0.3567	62.676	62.45	62.807	0					16	12	2	0	0	0	0.24542	1	15487	15487		14.582	2.9414	1	132850	+		3800	16885	1929	1929	4935	4935					0.08593862664952212
AYLLHRGKFL	10	Unmodified	_AYLLHRGKFL_					0	0	0		nc|ENSG00000171862|P60484-3|PTEN;PTEN|p.V175Cfs*8|1|0.08|ENSG00000171862|chr10:87952148-87952148|G/-|frameshift_variant;PTEN|p.R189Kfs*7|1|0.16|ENSG00000171862|chr10:87952169-87952170|-/TAAAGAATCATCTGGATTA|frameshift_variant;PTEN|p.K197Qfs*5|1|0.23|ENSG00000171862|chr10:87952212-87952213|-/C|frameshift_variant;ENSG00000171862|ENST00000371953|PTEN;ENST00000532280.1_1_9:33675440-33676694:-|nuORF;nc|ENSG00000171862|P60484-2|PTEN	nc|ENSG00000171862|P60484-3|PTEN	nc|ENSG00000171862|P60484-3|PTEN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.8828125	3	406.576631	1216.70806	-0.40127	-0.00016315	-0.40771	-0.00016576	-0.80898	-0.00032891	406.5764857603806	13.3	0.75308	13.2	13.042	13.795	-0.099291					36	26	2	0	0	0	0.32122	1	557	557		2.086	1.0145	1	574190			3801	6588	1930	1930	4936	4936					0.1083767928494126
AYLLNLNHL	9	Unmodified	_AYLLNLNHL_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.803955078125	2	535.803291	1069.59203	0.67989	0.00036429	0.20413	0.00010937	0.88401	0.00047366	535.8036418655684	63.929	1.4945	63.929	63.581	65.076	0					163	54	5	0	0	0	1.9541E-11	3	15897	15811;15854;15897		196.94	79.342	1	20745000			3802	858	1931	1931	4937;4938;4939	4939					0.06001735714221468
AYLLNLNHL	9	Unmodified	_AYLLNLNHL_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8037109375	2	535.803291	1069.59203	0.48083	0.00025763	0.34551	0.00018513	0.82634	0.00044275	535.8037330162226	63.796	2.0145	63.889	63.536	65.551	0.092926					185	73	5	0	0	0	1.9541E-11	5	15761	15751;15761;15800;15849;15890		196.94	79.342	1	19916000			3803	858	1931	1931	4940;4941;4942;4943;4944	4941					0.06001735714221468
AYLLNLNHL	9	Unmodified	_AYLLNLNHL_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8037719726562	2	535.803291	1069.59203	0.68163	0.00036522	0.21556	0.0001155	0.89719	0.00048072	535.8035923105713	63.933	1.778	63.923	63.622	65.4	-0.0095291					159	64	5	0	0	0	1.9541E-11	3	15802	15802;15853;15903		196.94	79.342	1	19611000			3804	858	1931	1931	4945;4946;4947	4945					0.06001735714221468
AYLLRRPAL	9	Unmodified	_AYLLRRPAL_					0	0	0			REV__ENSG00000185504|ENST00000327787|FAAP100	REV__ENSG00000185504|ENST00000327787|FAAP100	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.313720703125	2	536.834926	1071.6553	0.45782	0.00024577	0.010311	5.5353E-06	0.46813	0.00025131	536.8348397531388	43.507	0.68007	43.507	43.333	44.013	0					32	24	3	0	0	0	0.21905	1	9578	9578		23.148	9.2424	1	286650	+		3805	18384	1932	1932	4948	4948					0.12233721222105487
AYLLRRPAL	9	Unmodified	_AYLLRRPAL_					0	0	0			REV__ENSG00000185504|ENST00000327787|FAAP100	REV__ENSG00000185504|ENST00000327787|FAAP100	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	536.834926	1071.6553	0.54256	0.00029127	0.055706	2.9905E-05	0.59827	0.00032117	536.8349089730319	43.232	0.43962	43.309	43.075	43.515	0.077515	-0.098648	2.7012E-05	NaN	23.148	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220110	+		3806	18384	1932	1932							0.12233721222105487
AYLNFVSQM	9	Oxidation (M)	_AYLNFVSQM(Oxidation (M))_		AYLNFVSQM(1)		AYLNFVSQM(69)	0	0	1		nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A;ENST00000519920.1_1_8:132996397-133013042:+|nuORF	nc|ENSG00000132294|Q14156-3|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.757568359375	2	544.757692	1087.50083	0.79002	0.00043037	-0.78594	-0.00042814	0.0040833	2.2244E-06	544.7570931015098	60.557	0.59885	60.557	60.281	60.88	0					56	21	3	0	0	0	0.016723	1	14867	14867		69.105	38.468	1	2062000			3807	3617	1933	1933	4949	4949		459			-0.03941896045421345
AYLNFVSQM	9	Oxidation (M)	_AYLNFVSQM(Oxidation (M))_		AYLNFVSQM(1)		AYLNFVSQM(73)	0	0	1		nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A;ENST00000519920.1_1_8:132996397-133013042:+|nuORF	nc|ENSG00000132294|Q14156-3|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7918701171875	2	544.757692	1087.50083	0.86101	0.00046904	-0.70662	-0.00038494	0.15439	8.4103E-05	544.7571567725997	60.449	0.71265	60.544	60.211	60.923	0.095089					56	21	4	0	0	0	0.051692	1	14788	14788		72.968	44.473	1	1991200			3808	3617	1933	1933	4950	4950		459			-0.03941896045421345
AYLNFVSQM	9	Oxidation (M)	_AYLNFVSQM(Oxidation (M))_		AYLNFVSQM(1)		AYLNFVSQM(64)	0	0	1		nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A;ENST00000519920.1_1_8:132996397-133013042:+|nuORF	nc|ENSG00000132294|Q14156-3|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7919921875	2	544.757692	1087.50083	0.97039	0.00052863	-0.95248	-0.00051887	0.017911	9.7573E-06	544.7570111544196	60.613	0.6178	60.603	60.3	60.918	-0.0094566					57	22	3	0	0	0	0.075356	1	14841	14841		63.961	50.054	1	2152100			3809	3617	1933	1933	4951	4951		459			-0.03941896045421345
AYLNITKHL	9	Unmodified	_AYLNITKHL_					0	0	0		ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.8109130859375	2	536.811116	1071.60768	0.24531	0.00013169	-0.32879	-0.0001765	-0.083482	-4.4814E-05	536.8107635494243	41.325	0.3765	41.416	41.162	41.539	0.090248					27	13	3	0	0	0	0.0038965	1	8880	8880		100.09	52.342	1	532660			3810	3026	1934	1934	4952	4952					0.07474022231258459
AYLNITKHL	9	Unmodified	_AYLNITKHL_					0	0	0		ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7750854492188	2	536.811116	1071.60768	0.46965	0.00025211	-0.05063	-2.7179E-05	0.41902	0.00022493	536.8108645362959	41.275	0.35683	41.372	41.12	41.477	0.096622					29	12	3	0	0	0	0.067563	1	8888	8888		66.457	46.042	1	456660			3811	3026	1934	1934	4953	4953					0.07474022231258459
AYLPEWKENI	10	Unmodified	_AYLPEWKENI_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.82470703125	2	631.824421	1261.63429	0.54478	0.0003442	0.2461	0.00015549	0.79088	0.0004997	631.8244225584266	59.365	0.31364	59.35	59.113	59.427	-0.014267					18	10	2	0	0	0	0.29637	1	14426	14426		29.841	15.002	1	199840			3812	8073	1935	1935	4954	4954					0.01393666331955501
AYLPEWKENI	10	Unmodified	_AYLPEWKENI_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	631.824421	1261.63429	0.24745	0.00015634	0.25839	0.00016326	0.50584	0.0003196	631.8244010292872	59.333	0.34406	59.333	59.188	59.533	0	0.026594	0.00021688	NaN	29.841	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166190			3813	8073	1935	1935							0.01393666331955501
AYLPEWKENI	10	Unmodified	_AYLPEWKENI_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	631.824421	1261.63429	0.29354	0.00018547	-0.076172	-4.8127E-05	0.21737	0.00013734	631.8244586766298	59.145	0.33111	59.237	59.077	59.408	0.091301	-0.070294	-0.00020589	NaN	29.841	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169440			3814	8073	1935	1935							0.01393666331955501
AYLPKILQI	9	Unmodified	_AYLPKILQI_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.F1622Lfs*17|1|0.09|ENSG00000120800|chr12:101346566-101346567|-/TTTAGTATCGTATTCTC|frameshift_variant	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.8341064453125	2	529.83406	1057.65357	0.33201	0.00017591	-0.30191	-0.00015996	0.030108	1.5952E-05	529.8340650197243	69.43	1.0217	69.43	68.924	69.946	0					82	36	3	0	0	0	0.0085732	2	17526	17526;17575		81.613	0	1	1163200			3815	2965	1936	1936	4955;4956	4955					0.12704667413527204
AYLPKILQI	9	Unmodified	_AYLPKILQI_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.F1622Lfs*17|1|0.09|ENSG00000120800|chr12:101346566-101346567|-/TTTAGTATCGTATTCTC|frameshift_variant	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.8341674804688	2	529.83406	1057.65357	0.328	0.00017379	-0.52971	-0.00028066	-0.2017	-0.00010687	529.8340031174478	69.378	1.4301	69.444	68.671	70.101	0.066048					95	51	3	0	0	0	0.0041925	3	17517	17503;17517;17553		92.822	0	1	1182400			3816	2965	1936	1936	4957;4958;4959	4958					0.12704667413527204
AYLPKILQI	9	Unmodified	_AYLPKILQI_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.F1622Lfs*17|1|0.09|ENSG00000120800|chr12:101346566-101346567|-/TTTAGTATCGTATTCTC|frameshift_variant	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.8340454101562	2	529.83406	1057.65357	0.38239	0.0002026	-0.73347	-0.00038862	-0.35108	-0.00018602	529.8339468789143	69.488	1.4034	69.466	68.814	70.217	-0.022079					90	50	3	0	0	0	0.0085732	2	17537	17537;17587		81.613	0	1	1132500			3817	2965	1936	1936	4960;4961	4960					0.12704667413527204
AYLPKMMTL	9	2 Oxidation (M)	_AYLPKM(Oxidation (M))M(Oxidation (M))TL_		AYLPKM(1)M(1)TL		AYLPKM(63)M(63)TL	0	0	2		ENSG00000011007|ENST00000613537|ELOA;nc|ENSG00000011007|Q14241-1|ELOA	ENSG00000011007|ENST00000613537|ELOA	ENSG00000011007|ENST00000613537|ELOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2799682617188	2	550.279946	1098.54534	0.54474	0.00029976	-0.71259	-0.00039212	-0.16784	-9.236E-05	550.2795854967997	40.525	1.0738	40.525	39.886	40.96	0					106	38	4	0	0	0	0.023967	2	8649	8649;8701		62.573	28.47	1	1639900			3818	430	1937	1937	4962;4963	4962		43;44			7.917764378362335E-06
AYLPKMMTL	9	2 Oxidation (M)	_AYLPKM(Oxidation (M))M(Oxidation (M))TL_		AYLPKM(1)M(1)TL		AYLPKM(54)M(54)TL	0	0	2		ENSG00000011007|ENST00000613537|ELOA;nc|ENSG00000011007|Q14241-1|ELOA	ENSG00000011007|ENST00000613537|ELOA	ENSG00000011007|ENST00000613537|ELOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2799682617188	2	550.279946	1098.54534	0.52711	0.00029006	-0.10362	-5.7021E-05	0.42349	0.00023304	550.279607136292	40.349	1.3341	40.448	39.817	41.151	0.099407					105	48	4	0	0	0	0.047483	2	8606	8557;8606		53.833	13.806	1	1649600			3819	430	1937	1937	4964;4965	4965		43;44			7.917764378362335E-06
AYLPVNESF	9	Unmodified	_AYLPVNESF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2590942382812	2	520.258382	1038.50221	0.33894	0.00017634	0.13362	6.9515E-05	0.47256	0.00024585	520.2587997612821	64.911	2.3979	64.911	64.483	66.881	0					261	86	6	0	0	0	1.8227E-16	4	16150	16103;16150;16200;16245		205.78	123.89	1	29717000			3820	6196	1938	1938	4966;4967;4968;4969	4967					-0.015499386850024166
AYLPVNESF	9	Unmodified	_AYLPVNESF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2592163085938	2	520.258382	1038.50221	0.37887	0.00019711	0.12216	6.3554E-05	0.50103	0.00026066	520.2587950235188	64.807	2.6921	64.9	64.363	67.055	0.09288					283	98	6	0	0	0	4.1361E-11	4	16112	16065;16112;16155;16203		189.78	117.85	1	30306000			3821	6196	1938	1938	4970;4971;4972;4973	4971					-0.015499386850024166
AYLPVNESF	9	Unmodified	_AYLPVNESF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2592163085938	2	520.258382	1038.50221	0.22121	0.00011509	0.29639	0.0001542	0.5176	0.00026929	520.2588969968905	64.925	2.7578	64.914	64.362	67.12	-0.01133					242	100	5	0	0	0	4.1361E-11	4	16144	16095;16144;16185;16232		189.78	117.85	1	30402000			3822	6196	1938	1938	4974;4975;4976;4977	4975					-0.015499386850024166
AYLPVNESF	9	Unmodified	_AYLPVNESF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3328247070312	2	520.258382	1038.50221	0.51692	0.00026893	-1.5146	-0.00078797	-0.99765	-0.00051904	520.7589900308366	72.869	0.50702	72.84	72.594	73.101	-0.029305					33	17	3	0	0	0	0.2322	1	18584	18584		14.838	0	1	121300			3823	6196	1938	1938	4978	4978					-0.015499386850024166
AYLPVNESF	9	Unmodified	_AYLPVNESF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.296875	2	520.258382	1038.50221	0.2968	0.00015441	-0.88413	-0.00045998	-0.58733	-0.00030556	520.2579751554299	67.718	0.40256	67.702	67.506	67.909	-0.016296					19	13	2	0	0	0	0.1939	1	17070	17070		30.637	12.49	1	107580			3824	6196	1938	1938	4979	4979					-0.015499386850024166
AYLPVNESFGF	11	Unmodified	_AYLPVNESFGF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.30322265625	2	622.303321	1242.59209	0.28093	0.00017482	-0.15982	-9.9457E-05	0.12111	7.5366E-05	622.3031887661185	80.995	1.0182	80.995	80.681	81.699	0					156	47	5	0	0	0	5.008E-18	7	21057	21012;21057;21104;21152;21201;21214;21255		184.36	163.94	1	2555600			3825	6196	1939	1939	4980;4981;4982;4983;4984;4985;4986	4981					-0.01950309076460144
AYLPVNESFGF	11	Unmodified	_AYLPVNESFGF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.303466796875	2	622.303321	1242.59209	-0.14565	-9.0641E-05	0.25566	0.0001591	0.11001	6.8457E-05	622.3034799296026	80.893	0.84731	80.958	80.678	81.526	0.065094					141	40	5	0	0	0	5.7103E-18	6	21024	20983;21024;21069;21113;21158;21201		181.69	161.28	1	2959400			3826	6196	1939	1939	4987;4988;4989;4990;4991;4992	4988					-0.01950309076460144
AYLPVNESFGF	11	Unmodified	_AYLPVNESFGF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3034057617188	2	622.303321	1242.59209	-0.21342	-0.00013281	-0.10034	-6.2443E-05	-0.31376	-0.00019525	622.3029992620945	81.44	0.33907	81.509	81.44	81.779	0.068993					19	14	2	0	0	0	0.074971	2	21206	21206;21284		46.022	32.116	1	132540			3827	6196	1939	1939	4993;4994	4993					-0.01950309076460144
AYLPVNESFGF	11	Unmodified	_AYLPVNESFGF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3032836914062	2	622.303321	1242.59209	0.19917	0.00012394	-0.16202	-0.00010082	0.037151	2.3119E-05	622.303236585318	81.033	0.95145	81.006	80.731	81.683	-0.026825					122	41	4	0	0	0	2.1945E-25	7	21073	21028;21073;21119;21168;21216;21223;21272		211.85	185.59	1	2987000			3828	6196	1939	1939	4995;4996;4997;4998;4999;5000;5001	4996					-0.01950309076460144
AYLQRIALY	9	Unmodified	_AYLQRIALY_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;ENST00000467892.1_1_2:80816479-80835548:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7588500976562	2	555.818941	1109.62333	0.15958	8.87E-05	1.491	0.00082872	1.6506	0.00091742	555.8183988750723	57.233	0.38219	57.216	57.006	57.388	-0.0172					26	13	3	0	0	0	0.14099	1	13782	13782		34.102	14.845	1	180050			3829	620	1940	1940	5002	5002					0.0729030874831551
AYLRGLEVF	9	Unmodified	_AYLRGLEVF_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2902221679688	2	534.297842	1066.58113	0.42448	0.0002268	1.3385	0.00071515	1.763	0.00094195	534.2986077834254	63.242	0.44656	63.338	63.174	63.621	0.095722					20	15	2	0	0	0	0.13643	1	15612	15612		38.176	16.429	1	256950			3830	2033	1941	1941	5003	5003					0.05050333339931967
AYLRGLEVF	9	Unmodified	_AYLRGLEVF_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	534.297842	1066.58113	0.56233	0.00030045	1.253	0.00066949	1.8154	0.00096995	534.2984121872178	63.367	0.37437	63.358	63.217	63.592	-0.0085526	0.0081515	-0.00020828	NaN	38.176	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302540			3831	2033	1941	1941							0.05050333339931967
AYLRTLSVF	9	Unmodified	_AYLRTLSVF_					0	0	0			REV__ENST00000251241.8_1_17:57685452-57685632:+|nuORF	REV__ENST00000251241.8_1_17:57685452-57685632:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.739501953125	2	535.305667	1068.59678	0.012552	6.7192E-06	0.19327	0.00010346	0.20582	0.00011018	535.305595686597	61.79	1.1815	61.887	61.507	62.689	0.096985					90	42	3	0	0	0	0.13898	1	15099	15099		43.858	3.9086	1	357030	+		3832	19523	1942	1942	5004	5004					0.06522619856991696
AYLSAVGTF	9	Unmodified	_AYLSAVGTF_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;ENST00000574224.1_1_16:16108407-16150188:+|nuORF	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7424621582031	2	464.742368	927.470183	-0.30182	-0.00014027	0.47978	0.00022298	0.17796	8.2706E-05	464.74246045316966	65.166	0.72408	65.166	64.884	65.608	0					61	25	3	0	0	0	4.4046E-07	2	16230	16230;16279		162.95	66.666	1	935950			3833	1819	1943	1943	5005;5006	5005					0.00354693631857117
AYLSAVGTF	9	Unmodified	_AYLSAVGTF_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;ENST00000574224.1_1_16:16108407-16150188:+|nuORF	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.742431640625	2	464.742368	927.470183	-0.2575	-0.00011967	0.58977	0.00027409	0.33227	0.00015442	464.7424547686066	65.059	0.80851	65.148	64.844	65.653	0.088882					70	29	4	0	0	0	5.6754E-05	2	16190	16190;16240		147.83	58.928	1	1061400			3834	1819	1943	1943	5007;5008	5007					0.00354693631857117
AYLSAVGTF	9	Unmodified	_AYLSAVGTF_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;ENST00000574224.1_1_16:16108407-16150188:+|nuORF	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.74237060546875	2	464.742368	927.470183	-0.14662	-6.814E-05	0.37221	0.00017298	0.22559	0.00010484	464.7424060686645	65.134	0.50002	65.123	64.922	65.422	-0.011337					51	18	3	0	0	0	4.4046E-07	2	16214	16214;16271		162.95	66.666	1	970180			3835	1819	1943	1943	5009;5010	5009					0.00354693631857117
AYLSGMLRF	9	Oxidation (M)	_AYLSGM(Oxidation (M))LRF_		AYLSGM(1)LRF		AYLSGM(140)LRF	0	0	1		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2763671875	2	537.276052	1072.53755	1.1608	0.00062369	0.94093	0.00050554	2.1018	0.0011292	537.2760316709348	56.085	1.7034	56.085	55.732	57.435	0					158	62	5	0	0	0	9.2305E-05	3	13399	13399;13450;13494		142.08	63.93	1	13115000			3836	6220	1944	1944	5011;5012;5013	5011		732			0.004184005711522332
AYLSGMLRF	9	Oxidation (M)	_AYLSGM(Oxidation (M))LRF_		AYLSGM(1)LRF		AYLSGM(140)LRF	0	0	1		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.276611328125	2	537.276052	1072.53755	0.8828	0.00047431	-0.70022	-0.00037621	0.18258	9.8095E-05	537.2761070864841	55.998	0.81562	56.069	55.751	56.567	0.070885					71	29	3	0	0	0	9.2305E-05	3	13380	13380;13428;13478		142.08	89.811	1	9743500			3837	6220	1944	1944	5014;5015;5016	5014		732			0.004184005711522332
AYLSGMLRF	9	Oxidation (M)	_AYLSGM(Oxidation (M))LRF_		AYLSGM(1)LRF		AYLSGM(140)LRF	0	0	1		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2765502929688	2	537.276052	1072.53755	1.099	0.00059045	-0.72749	-0.00039086	0.37149	0.00019959	537.2761438935468	56.225	0.83859	56.206	55.942	56.78	-0.019081					75	30	3	0	0	0	9.2305E-05	3	13459	13459;13511;13562		142.08	89.811	1	10865000			3838	6220	1944	1944	5017;5018;5019	5017		732			0.004184005711522332
AYLSIKAFAF	10	Unmodified	_AYLSIKAFAF_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.8088989257812	2	565.815867	1129.61718	0.52742	0.00029842	-0.4336	-0.00024534	0.093828	5.3089E-05	565.8157420275617	45.911	0.89973	45.911	45.53	46.43	0					81	32	4	0	0	0	0.29092	1	10455	10455		21.537	2.28	1	4133400			3839	3530	1945	1945	5020	5020					0.05755790516786874
AYLSKAMEI	9	Oxidation (M)	_AYLSKAM(Oxidation (M))EI_		AYLSKAM(1)EI		AYLSKAM(94)EI	0	0	1		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2685546875	2	521.267893	1040.52123	0.81016	0.00042231	0.36413	0.00018981	1.1743	0.00061212	521.2679379988145	37.497	0.91665	37.497	37.039	37.956	0					49	32	2	0	0	0	0.0040516	1	7729	7729		93.938	40.105	1	720560			3840	3181	1946	1946	5021	5021		394			0.0025927461438186583
AYLSKAMEI	9	Oxidation (M)	_AYLSKAM(Oxidation (M))EI_		AYLSKAM(1)EI		AYLSKAM(76)EI	0	0	1		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2685546875	2	521.267893	1040.52123	0.46083	0.00024021	0.88119	0.00045934	1.342	0.00069955	521.2680615800515	37.085	0.38178	37.172	36.95	37.332	0.087406					24	13	2	0	0	0	0.01251	1	7586	7586		75.571	37.395	1	518630			3841	3181	1946	1946	5022	5022		394			0.0025927461438186583
AYLSKAMEI	9	Oxidation (M)	_AYLSKAM(Oxidation (M))EI_		AYLSKAM(1)EI		AYLSKAM(90)EI	0	0	1		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.268310546875	2	521.267893	1040.52123	0.44609	0.00023253	0.82852	0.00043188	1.2746	0.00066441	521.268103387337	37.409	0.62585	37.496	37.305	37.93	0.08741					39	22	2	0	0	0	0.0045319	1	7707	7707		90.135	48.295	1	578760			3842	3181	1946	1946	5023	5023		394			0.0025927461438186583
AYLSKAMEI	9	Oxidation (M)	_AYLSKAM(Oxidation (M))EI_		AYLSKAM(1)EI		AYLSKAM(85)EI	0	0	1		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.268310546875	2	521.267893	1040.52123	0.45602	0.00023771	0.96126	0.00050108	1.4173	0.00073879	521.2681598298025	37.275	0.97158	37.368	36.951	37.922	0.093014					64	35	3	0	0	0	0.0066776	1	7683	7683		84.522	46.347	1	769410			3843	3181	1946	1946	5024	5024		394			0.0025927461438186583
AYLSKAMEI	9	Oxidation (M)	_AYLSKAM(Oxidation (M))EI_		AYLSKAM(1)EI		AYLSKAM(67)EI	0	0	1		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2685546875	2	521.267893	1040.52123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.071	1	37.164	36.664	37.664	0.093018								0	0	0	0.029413	1	7589	7589		67.081	21.381	1				3844	3181	1946	1946	5025	5025		394			0.0025927461438186583
AYLSWLAQI	9	Unmodified	_AYLSWLAQI_					0	0	0			REV__ENST00000418987.2_1_9:103493819-103494230:+|nuORF	REV__ENST00000418987.2_1_9:103493819-103494230:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.282470703125	2	532.792392	1063.57023	0.53195	0.00028342	-2.3346	-0.0012439	-1.8027	-0.00096046	532.7913225933369	49.777	0.5148	49.777	49.408	49.923	0					27	18	2	0	0	0	0.1854	1	11478	11478		25.399	0	1	290960	+		3845	20840	1947	1947	5026	5026					0.040989309656424666
AYLTLTSRM	9	Oxidation (M)	_AYLTLTSRM(Oxidation (M))_		AYLTLTSRM(1)		AYLTLTSRM(130)	0	0	1		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2794189453125	2	536.278792	1070.54303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.188	1	40.28	39.78	40.78	0.09267								0	0	0	1.3123E-06	1	8548	8548		128.93	71.21	1				3846	1153	1948	1948	5027	5027		138			0.010580793629742402
AYLVAHSFL	9	Unmodified	_AYLVAHSFL_					0	0	0		nc|ENSG00000143036|Q8N4M1-5|SLC44A3;nc|ENSG00000143036|Q8N4M1-4|SLC44A3;nc|ENSG00000143036|Q8N4M1-2|SLC44A3;nc|ENSG00000143036|Q8N4M1-3|SLC44A3;nc|ENSG00000143036|Q8N4M1-6|SLC44A3;ENSG00000143036|ENST00000271227|SLC44A3	nc|ENSG00000143036|Q8N4M1-5|SLC44A3	nc|ENSG00000143036|Q8N4M1-5|SLC44A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.30010986328125	2	510.779285	1019.54402	0.35839	0.00018306	0.28702	0.0001466	0.64541	0.00032966	510.7793983549177	58.797	0.42317	58.783	58.608	59.031	-0.014267					21	14	2	0	0	0	0.21905	1	14293	14293		23.148	5.0134	1	236410			3847	4476	1949	1949	5028	5028					0.03502661794186679
AYLVEPEIV	9	Unmodified	_AYLVEPEIV_					0	0	0			REV__nc|ENSG00000113580|P04150-16|NR3C1	REV__nc|ENSG00000113580|P04150-16|NR3C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7391967773438	2	516.784233	1031.55391	0.54015	0.00027914	-1.4574	-0.00075316	-0.91724	-0.00047401	516.7838743770429	82.819	1.6619	82.819	82.197	83.859	0					137	62	3	0	0	0	0.23783	1	21573	21573		18.135	2.2878	1	395270	+		3848	14814	1950	1950	5029	5029					0.039398050088948366
AYLVEPEIV	9	Unmodified	_AYLVEPEIV_					0	0	0			REV__nc|ENSG00000113580|P04150-16|NR3C1	REV__nc|ENSG00000113580|P04150-16|NR3C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.739013671875	2	516.784233	1031.55391	0.39635	0.00020483	-1.1984	-0.00061933	-0.80208	-0.0004145	516.7839955659248	82.769	1.8182	82.749	82.113	83.931	-0.020584					122	74	2	0	0	0	0.23783	1	21482	21482		18.135	3.5533	1	453150	+		3849	14814	1950	1950	5030	5030					0.039398050088948366
AYLVHIEHL	9	Unmodified	_AYLVHIEHL_					0	0	0		ENSG00000171444|ENST00000408903|MCC;nc|ENSG00000171444|P23508|MCC	ENSG00000171444|ENST00000408903|MCC	ENSG00000171444|ENST00000408903|MCC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.79345703125	2	547.803291	1093.59203	0.71697	0.00039276	3.5985	0.0019712	4.3154	0.002364	547.8032729032841	47.245	0.44347	47.245	47.024	47.468	0					53	15	4	0	0	0	0.155	1	10715	10715		30.225	8.4782	1	885250			3850	6540	1951	1951	5031	5031					0.04897735714234841
AYLVHIEHL	9	Unmodified	_AYLVHIEHL_					0	0	0		ENSG00000171444|ENST00000408903|MCC;nc|ENSG00000171444|P23508|MCC	ENSG00000171444|ENST00000408903|MCC	ENSG00000171444|ENST00000408903|MCC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.803955078125	2	547.803291	1093.59203	0.48559	0.00026601	2.0751	0.0011367	2.5607	0.0014027	547.8043060855208	47.202	0.53719	47.254	47.062	47.599	0.052574					32	19	2	0	0	0	0.0014051	1	10711	10711		117.6	81.472	1	841060			3851	6540	1951	1951	5032	5032					0.04897735714234841
AYLVHIEHL	9	Unmodified	_AYLVHIEHL_					0	0	0		ENSG00000171444|ENST00000408903|MCC;nc|ENSG00000171444|P23508|MCC	ENSG00000171444|ENST00000408903|MCC	ENSG00000171444|ENST00000408903|MCC	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	547.803291	1093.59203	1.1376	0.00062316	4.7899	0.0026239	5.9275	0.0032471	547.8040276274592	47.168	0.65049	47.222	46.972	47.622	0.054375	-0.018466	0.0019864	NaN	117.6	68	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	956980			3852	6540	1951	1951							0.04897735714234841
AYLVNTYAL	9	Unmodified	_AYLVNTYAL_					0	0	0		ENSG00000109919|ENST00000302503|MTCH2;ENST00000534074.5_1_11:47640387-47650630:-|nuORF	ENSG00000109919|ENST00000302503|MTCH2	ENSG00000109919|ENST00000302503|MTCH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.276611328125	2	514.276575	1026.5386	0.32791	0.00016864	0.017957	9.2349E-06	0.34587	0.00017787	514.276437237571	67.762	1.0234	67.762	67.279	68.303	0					88	36	3	0	0	0	3.5085E-07	3	17014	17014;17067;17113		166.45	78.862	1	4005300			3853	2279	1952	1952	5033;5034;5035	5033					0.026389382117031346
AYLVNTYAL	9	Unmodified	_AYLVNTYAL_					0	0	0		ENSG00000109919|ENST00000302503|MTCH2;ENST00000534074.5_1_11:47640387-47650630:-|nuORF	ENSG00000109919|ENST00000302503|MTCH2	ENSG00000109919|ENST00000302503|MTCH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2764282226562	2	514.276575	1026.5386	0.3969	0.00020412	-0.1251	-6.4334E-05	0.27181	0.00013978	514.276315739164	67.699	0.89252	67.777	67.354	68.246	0.078041					106	31	5	0	0	0	6.7091E-11	4	16967	16967;17011;17058;17112		181.33	92.374	1	3882600			3854	2279	1952	1952	5036;5037;5038;5039	5036					0.026389382117031346
AYLVNTYAL	9	Unmodified	_AYLVNTYAL_					0	0	0		ENSG00000109919|ENST00000302503|MTCH2;ENST00000534074.5_1_11:47640387-47650630:-|nuORF	ENSG00000109919|ENST00000302503|MTCH2	ENSG00000109919|ENST00000302503|MTCH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2765502929688	2	514.276575	1026.5386	0.15931	8.1932E-05	0.16731	8.6041E-05	0.32662	0.00016797	514.2765154905686	67.786	0.99047	67.77	67.357	68.348	-0.016296					86	34	3	0	0	0	6.7091E-11	4	16996	16996;17037;17089;17164		181.33	88.836	1	3883600			3855	2279	1952	1952	5040;5041;5042;5043	5040					0.026389382117031346
AYLVYTDRL	9	Unmodified	_AYLVYTDRL_					0	0	0		nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7637939453125	2	557.300581	1112.58661	0.55765	0.00031078	-0.74965	-0.00041778	-0.19199	-0.000107	557.3001906965932	54.068	0.4067	54.068	53.834	54.24	0					26	14	2	0	0	0	0.051692	1	12792	12792		72.968	36.841	1	438560			3856	4412	1953	1953	5044	5044					0.03482012131757983
AYLVYTDRL	9	Unmodified	_AYLVYTDRL_					0	0	0		nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.763671875	2	557.300581	1112.58661	0.37209	0.00020737	-0.13436	-7.4881E-05	0.23773	0.00013249	557.3006147911251	54.006	0.44525	54.068	53.772	54.217	0.061798					28	16	2	0	0	0	0.0069488	1	12771	12771		96.111	43.843	1	475980			3857	4412	1953	1953	5045	5045					0.03482012131757983
AYLVYTDRL	9	Unmodified	_AYLVYTDRL_					0	0	0		nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7637329101562	2	557.300581	1112.58661	0.42441	0.00023653	-0.8134	-0.00045331	-0.38899	-0.00021678	557.3000145072617	54.22	0.49257	54.204	54.03	54.522	-0.015923					33	16	3	0	0	0	0.042824	1	12856	12856		75.761	33.921	1	498700			3858	4412	1953	1953	5046	5046					0.03482012131757983
AYLYEERWT	9	Unmodified	_AYLYEERWT_					0	0	0		ENSG00000181027|ENST00000318584|FKRP	ENSG00000181027|ENST00000318584|FKRP	ENSG00000181027|ENST00000318584|FKRP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.55242919921875	3	410.864506	1229.57169	0.28014	0.0001151	-0.45424	-0.00018663	-0.17409	-7.1528E-05	410.86369124857407	44.68	0.16087	44.748	44.682	44.843	0.068569					8	5	2	0	0	0	0.26099	1	9928	9928		0.26902	0.18567	1	67931			3859	7217	1954	1954	5047	5047					-0.03391479736251313
AYLYEVSQL	9	Unmodified	_AYLYEVSQL_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2799682617188	2	543.279315	1084.54408	0.47096	0.00025587	0.98371	0.00053443	1.4547	0.0007903	543.2796234380911	67.988	0.73389	67.988	67.757	68.491	0					62	26	3	0	0	0	0.0037449	1	17089	17089		96.367	52.508	1	1608600			3860	3705	1955	1955	5048	5048					0.005186170035358373
AYLYEVSQL	9	Unmodified	_AYLYEVSQL_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2798461914062	2	543.279315	1084.54408	0.65816	0.00035756	0.74372	0.00040405	1.4019	0.00076161	543.2794857480153	67.911	0.85577	67.989	67.687	68.543	0.078041					68	30	3	0	0	0	0.04299	1	17039	17039		55.503	16.888	1	1540700			3861	3705	1955	1955	5049	5049					0.005186170035358373
AYLYEVSQL	9	Unmodified	_AYLYEVSQL_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.27978515625	2	543.279315	1084.54408	0.59745	0.00032458	0.79988	0.00043456	1.3973	0.00075914	543.2795675901242	67.994	0.79202	67.978	67.727	68.519	-0.016296					47	27	2	0	0	0	0.011693	1	17082	17082		76.825	27.27	1	1779000			3862	3705	1955	1955	5050	5050					0.005186170035358373
AYLYFAEQS	9	Unmodified	_AYLYFAEQS_					0	0	0			REV__LYST|p.F1726Lfs*2|1|0.35|ENSG00000143669|chr1:235780901-235780901|A/-|frameshift_variant	REV__LYST|p.F1726Lfs*2|1|0.35|ENSG00000143669|chr1:235780901-235780901|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8008422851562	2	546.25584	1090.49713	1.0295	0.00056237	-0.82955	-0.00045315	0.19995	0.00010922	546.2552338675625	77.663	0.745	77.631	77.237	77.982	-0.031334					35	26	2	0	0	0	0.24913	1	20003	20003		12.532	0.89125	1	169060	+		3863	16193	1956	1956	5051	5051					-0.044502425476366625
AYMERMNYI	9	2 Oxidation (M)	_AYM(Oxidation (M))ERM(Oxidation (M))NYI_		AYM(1)ERM(1)NYI		AYM(62)ERM(62)NYI	0	0	2		ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.7645263671875	2	611.765191	1221.51583	0.51264	0.00031362	-0.60951	-0.00037288	-0.096871	-5.9263E-05	611.7650986752975	33.723	1.0767	33.723	33.259	34.336	0					110	38	4	0	0	0	0.026579	1	6503	6503		61.602	34.379	1	781740			3864	285	1957	1957	5052	5052		20;21			-0.08606772239704696
AYMERMNYI	9	2 Oxidation (M)	_AYM(Oxidation (M))ERM(Oxidation (M))NYI_		AYM(1)ERM(1)NYI		AYM(42)ERM(42)NYI	0	0	2		ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.7647705078125	2	611.765191	1221.51583	0.61547	0.00037652	-0.83745	-0.00051232	-0.22198	-0.0001358	611.7650177931363	33.478	0.93777	33.545	33.154	34.092	0.06636					104	33	5	0	0	0	0.07944	1	6431	6431		41.956	21.541	1	839380			3865	285	1957	1957	5053	5053		20;21			-0.08606772239704696
AYMERMNYI	9	2 Oxidation (M)	_AYM(Oxidation (M))ERM(Oxidation (M))NYI_		AYM(1)ERM(1)NYI		AYM(58)ERM(58)NYI	0	0	2		ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.7652587890625	2	611.765191	1221.51583	0.106	6.4845E-05	0.11576	7.0819E-05	0.22176	0.00013566	611.7653521615831	33.465	0.96931	33.531	33.158	34.127	0.066704					90	34	3	0	0	0	0.037019	1	6436	6436		57.722	27.019	1	647230			3866	285	1957	1957	5054	5054		20;21			-0.08606772239704696
AYMLVYIR	8	Unmodified	_AYMLVYIR_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2717895507812	2	514.783513	1027.55247	0.034788	1.7908E-05	3.0529	0.0015716	3.0877	0.0015895	514.7848609997973	15.814	0.23723	15.704	15.579	15.816	-0.10981					9	7	2	0	0	0	0.45851	1	1149	1149		2.8892	0.31174	1	13059			3867	7691	1958	1958	5055	5055					0.03979892439156174
AYMPHTFFI	9	Oxidation (M)	_AYM(Oxidation (M))PHTFFI_		AYM(1)PHTFFI		AYM(160)PHTFFI	0	0	1		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7706298828125	2	571.770603	1141.52665	0.0055519	3.1744E-06	-0.3242	-0.00018537	-0.31865	-0.00018219	571.7703920095273	59.658	1.0608	59.658	59.326	60.387	0					106	37	5	0	0	0	4.6753E-07	3	14535	14485;14535;14587		161.89	111.04	1	11196000			3868	4752	1959	1959	5056;5057;5058	5057		591			-0.038450018031426225
AYMPHTFFI	9	Oxidation (M)	_AYM(Oxidation (M))PHTFFI_		AYM(1)PHTFFI		AYM(160)PHTFFI	0	0	1		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.7706909179688	2	571.770603	1141.52665	0.13723	7.8467E-05	-0.46909	-0.00026821	-0.33185	-0.00018974	571.7703172638866	59.569	1.1253	59.664	59.242	60.368	0.095093					112	40	5	0	0	0	4.6753E-07	4	14479	14432;14479;14528;14572		161.89	111.04	1	10213000			3869	4752	1959	1959	5059;5060;5061;5062	5060		591			-0.038450018031426225
AYMPHTFFI	9	Oxidation (M)	_AYM(Oxidation (M))PHTFFI_		AYM(1)PHTFFI		AYM(160)PHTFFI	0	0	1		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7706909179688	2	571.770603	1141.52665	0.29992	0.00017149	-0.67896	-0.00038821	-0.37903	-0.00021672	571.7701412360591	59.717	1.2337	59.705	59.28	60.514	-0.011486					118	43	4	0	0	0	4.6753E-07	3	14515	14468;14515;14560		161.89	111.04	1	10040000			3870	4752	1959	1959	5063;5064;5065	5064		591			-0.038450018031426225
AYMRSLNNF	9	Oxidation (M)	_AYM(Oxidation (M))RSLNNF_		AYM(1)RSLNNF		AYM(93)RSLNNF	0	0	1		ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94234505-94239065:-|nuORF;nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF	ENSG00000119912|ENST00000265986|IDE	ENSG00000119912|ENST00000265986|IDE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.2662353515625	2	566.266216	1130.51788	0.37018	0.00020962	-0.048507	-2.7468E-05	0.32167	0.00018215	566.2660813056406	35.701	0.57281	35.701	35.439	36.012	0					42	20	3	0	0	0	0.0041491	1	7175	7175		93.166	57.039	1	496860			3871	2914	1960	1960	5066	5066		365			-0.04215975439615249
AYMRSLNNF	9	Oxidation (M)	_AYM(Oxidation (M))RSLNNF_		AYM(1)RSLNNF		AYM(65)RSLNNF	0	0	1		ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94234505-94239065:-|nuORF;nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF	ENSG00000119912|ENST00000265986|IDE	ENSG00000119912|ENST00000265986|IDE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.2670288085938	2	566.266216	1130.51788	0.42994	0.00024346	-0.10371	-5.8727E-05	0.32623	0.00018473	566.2660126171589	35.561	0.54734	35.643	35.461	36.008	0.082355					37	19	3	0	0	0	0.01909	1	7149	7149		65.474	42.737	1	473960			3872	2914	1960	1960	5067	5067		365			-0.04215975439615249
AYMRSLNNF	9	Oxidation (M)	_AYM(Oxidation (M))RSLNNF_		AYM(1)RSLNNF		AYM(78)RSLNNF	0	0	1		ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94234505-94239065:-|nuORF;nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF	ENSG00000119912|ENST00000265986|IDE	ENSG00000119912|ENST00000265986|IDE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.2662963867188	2	566.266216	1130.51788	0.034268	1.9405E-05	0.12714	7.1993E-05	0.1614	9.1398E-05	566.2663244446752	35.572	0.5843	35.659	35.45	36.034	0.08625					38	20	3	0	0	0	0.010888	1	7119	7119		78.06	54.912	1	565150			3873	2914	1960	1960	5068	5068		365			-0.04215975439615249
AYMTTDRSTQC	11	Unmodified	_AYMTTDRSTQC_					0	0	0			REV__ENSG00000165688|ENST00000371717|PMPCA	REV__ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.181396484375	3	426.1814	1275.52237	0.046394	1.9772E-05	-0.058817	-2.5067E-05	-0.012422	-5.2942E-06	426.18137322513974	30.085	0.92697	30.085	29.774	30.701	0					85	32	3	0	0	0	0.39244	1	5453	5453		12.228	12.228	1	1415400	+		3874	17255	1961	1961	5069	5069					-0.10436879078974926
AYNEGIINLL	10	Unmodified	_AYNEGIINLL_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3060913085938	2	560.305864	1118.59717	0.26787	0.00015009	0.22023	0.0001234	0.4881	0.00027349	560.3059616491274	81.463	1.1538	81.463	81.108	82.262	0					132	46	4	0	0	0	1.5574E-05	1	21240	21240		147.24	61.969	1	3716100			3875	1009	1962	1962	5070	5070					0.04261994786179457
AYNEGIINLL	10	Unmodified	_AYNEGIINLL_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.305864	1118.59717	0.053341	2.9887E-05	0.48629	0.00027247	0.53963	0.00030236	560.3061359969661	81.367	1.3192	81.436	80.835	82.154	0.068993	-0.022711	6.198E-05	NaN	147.24	161	62	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3563100			3876	1009	1962	1962							0.04261994786179457
AYNPMARDLF	10	Oxidation (M)	_AYNPM(Oxidation (M))ARDLF_		AYNPM(1)ARDLF		AYNPM(97)ARDLF	0	0	1		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.2870483398438	2	607.287148	1212.55974	0.68877	0.00041828	-0.021699	-1.3177E-05	0.66707	0.0004051	607.2870979637898	47.91	0.92389	47.91	47.682	48.606	0					70	32	3	0	0	0	0.0040945	2	10995	10951;10995		96.936	74.199	1	2498400			3877	8126	1963	1963	5071;5072	5072		884			-0.03803419751079673
AYNPMARDLF	10	Oxidation (M)	_AYNPM(Oxidation (M))ARDLF_		AYNPM(1)ARDLF		AYNPM(87)ARDLF	0	0	1		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.2874755859375	2	607.287148	1212.55974	0.8492	0.00051571	-0.19284	-0.00011711	0.65637	0.0003986	607.2869815822061	47.866	1.0114	47.914	47.621	48.632	0.04752					69	37	2	0	0	0	0.0057544	3	10973	10923;10973;11023		87.258	58.177	1	2705300			3878	8126	1963	1963	5073;5074;5075	5074		884			-0.03803419751079673
AYNPMARDLF	10	Oxidation (M)	_AYNPM(Oxidation (M))ARDLF_		AYNPM(1)ARDLF		AYNPM(100)ARDLF	0	0	1		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.287353515625	2	607.287148	1212.55974	0.54035	0.00032815	-0.15101	-9.1707E-05	0.38934	0.00023644	607.2871481352303	47.852	0.89569	47.895	47.587	48.483	0.04332					74	33	3	0	0	0	0.0034473	3	10973	10899;10920;10973		100.71	74.441	1	2836700			3879	8126	1963	1963	5076;5077;5078	5078		884			-0.03803419751079673
AYNPNTQTF	9	Unmodified	_AYNPNTQTF_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7444458007812	2	528.243264	1054.47197	0.46757	0.00024699	-0.39025	-0.00020615	0.077316	4.0842E-05	528.2431878515754	41.791	0.40636	41.791	41.707	42.113	0					29	17	2	0	0	0	0.0028542	1	9045	9045		103.42	47.917	1	1517600			3880	6791	1964	1964	5079	5079					-0.05308297350211433
AYNPVTHQL	9	Unmodified	_AYNPVTHQL_					0	0	0		ENST00000525625.1_1_11:125884983-125893371:-|nuORF;ENSG00000064309|ENST00000531738|CDON;nc|ENSG00000064309|Q4KMG0|CDON	ENST00000525625.1_1_11:125884983-125893371:-|nuORF	ENST00000525625.1_1_11:125884983-125893371:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.769775390625	2	521.769448	1041.52434	0.84961	0.0004433	-0.10729	-5.5981E-05	0.74231	0.00038732	521.7692881867314	36.444	0.51163	36.531	36.3	36.811	0.08625					34	17	3	0	0	0	0.22215	1	7407	7407		20.415	4.2654	1	284460			3881	786	1965	1965	5080	5080					0.005242857834218739
AYNPVTHQL	9	Unmodified	_AYNPVTHQL_					0	0	0		ENST00000525625.1_1_11:125884983-125893371:-|nuORF;ENSG00000064309|ENST00000531738|CDON;nc|ENSG00000064309|Q4KMG0|CDON	ENST00000525625.1_1_11:125884983-125893371:-|nuORF	ENST00000525625.1_1_11:125884983-125893371:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.769448	1041.52434	0.56706	0.00029588	0.27175	0.00014179	0.83882	0.00043767	521.7695283278294	36.571	0.544	36.571	36.358	36.902	0	0.020178	0.00012734	NaN	20.415	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259460			3882	786	1965	1965							0.005242857834218739
AYNRIVDAL	9	Unmodified	_AYNRIVDAL_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-2|FNIP1;FNIP1|p.A494Qfs*26|1|0.37|ENSG00000217128|chr5:131677742-131677742|C/-|frameshift_variant	nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8159790039062	2	517.785099	1033.55564	0.41498	0.00021487	-0.079096	-4.0955E-05	0.33589	0.00017392	517.785000303782	48.877	0.7434	48.922	48.598	49.342	0.044891					34	26	2	0	0	0	0.12563	1	11212	11212		47.749	18.667	1	519580			3883	8413	1966	1966	5081	5081					0.04020858817534645
AYPAIRYLL	9	Unmodified	_AYPAIRYLL_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000496863.5_1_1:155679570-155695280:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3165283203125	2	540.316035	1078.61752	0.63048	0.00034066	1.3368	0.00072229	1.9673	0.0010629	540.3166194932718	66.049	1.2544	66.133	65.318	66.572	0.083832					98	45	3	0	0	0	0.10197	1	16572	16572		37.974	17.52	1	922520			3884	3656	1967	1967	5082	5082					0.08135210236650892
AYPAIRYLL	9	Unmodified	_AYPAIRYLL_					0	0	0		nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000496863.5_1_1:155679570-155695280:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF	nc|ENSG00000132676|P51398-2|DAP3	nc|ENSG00000132676|P51398-2|DAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8294067382812	2	540.316035	1078.61752	0.60306	0.00032585	1.4605	0.00078913	2.0636	0.001115	540.3166429791038	66.248	1.134	66.234	65.528	66.662	-0.013588					78	40	2	0	0	0	0.23783	1	16657	16657		18.135	0	1	993880			3885	3656	1967	1967	5083	5083					0.08135210236650892
AYPDFAPQKF	10	Unmodified	_AYPDFAPQKF_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.2924194335938	2	592.292756	1182.57096	0.74882	0.00044352	-0.45575	-0.00026994	0.29307	0.00017358	592.2921041639005	55.008	0.71573	54.992	54.522	55.238	-0.015923					43	26	2	0	0	0	0.15113	1	13076	13076		38.615	26.083	1	965900			3886	7076	1968	1968	5084	5084					-0.013022743853071006
AYPDFAPQKF	10	Unmodified	_AYPDFAPQKF_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	592.292756	1182.57096	0.76693	0.00045425	0.84543	0.00050074	1.6124	0.00095499	592.29199208853	54.628	0.75967	54.628	54.214	54.974	0	-0.18221	0.00091765	NaN	38.615	72	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	558210			3887	7076	1968	1968							-0.013022743853071006
AYPERENTLY	10	Unmodified	_AYPERENTLY_					0	0	0			REV__ZBTB11|p.A610Lfs*25|1|0.14|ENSG00000066422|chr3:101660001-101660002|CA/-|frameshift_variant	REV__ZBTB11|p.A610Lfs*25|1|0.14|ENSG00000066422|chr3:101660001-101660002|CA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.3018188476562	2	628.30131	1254.58807	0.83181	0.00052263	-0.58341	-0.00036656	0.2484	0.00015607	628.3012089865009	56.24	0.68513	56.221	55.798	56.483	-0.019081					66	24	4	0	0	0	0.38773	1	13439	13439		5.7319	0.43497	1	1754800	+		3888	13680	1969	1969	5085	5085					-0.02904398570126432
AYPEYLITY	9	Unmodified	_AYPEYLITY_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	ENSG00000173273|ENST00000310430|TNKS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.7818603515625	2	566.78169	1131.54883	0.31617	0.0001792	-1.5115	-0.00085666	-1.1953	-0.00067746	566.7816618948237	71.673	2.6999	71.673	71.128	73.828	0					243	97	5	0	0	0	0.0037552	3	18202	18202;18250;18296		96.285	41.511	1	5446400			3889	6712;2152	1970	1970	5086;5087;5088	5086					-0.011684988537126628
AYPEYLITY	9	Unmodified	_AYPEYLITY_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	ENSG00000173273|ENST00000310430|TNKS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.7821044921875	2	566.78169	1131.54883	0.40537	0.00022975	-1.3896	-0.00078762	-0.98428	-0.00055787	566.7815774061023	71.593	1.9452	71.649	71.175	73.12	0.056572					207	70	4	0	0	0	0.0037552	4	18181	18181;18229;18274;18283		96.285	41.511	1	5032800			3890	6712;2152	1970	1970	5089;5090;5091;5092	5089					-0.011684988537126628
AYPEYLITY	9	Unmodified	_AYPEYLITY_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	ENSG00000173273|ENST00000310430|TNKS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.781494140625	2	566.78169	1131.54883	0.35419	0.00020075	-0.8598	-0.00048732	-0.50561	-0.00028657	566.7816406256766	71.722	1.9465	71.695	71.157	73.103	-0.027275					179	69	5	0	0	0	0.0022761	3	18303	18207;18253;18303		108	73.595	1	5844300			3891	6712;2152	1970	1970	5093;5094;5095	5095					-0.011684988537126628
AYPEYLLTF	9	Unmodified	_AYPEYLLTF_					0	0	0		PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.785888671875	2	558.784233	1115.55391	0.5736	0.00032052	-0.17195	-9.6085E-05	0.40164	0.00022443	558.7847598219178	83.385	1.924	83.385	82.874	84.798	0					258	74	6	0	0	0	2.2223E-07	8	21830	21738;21783;21830;21878;21925;21970;22018;22136		171.47	0	1	29936000			3892	13040	1971	1971	5096;5097;5098;5099;5100;5101;5102;5103	5098					0.0007580500889616815
AYPEYLLTF	9	Unmodified	_AYPEYLLTF_					0	0	0		PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.7854614257812	2	558.784233	1115.55391	0.49722	0.00027784	-0.068914	-3.8508E-05	0.4283	0.00023933	558.7848097209055	83.326	2.7553	83.399	82.651	85.406	0.073097					338	108	7	0	0	0	2.2223E-07	9	21789	21700;21752;21789;21832;21875;21921;21968;22016;22062		171.47	0	1	29011000			3893	13040	1971	1971	5104;5105;5106;5107;5108;5109;5110;5111;5112	5106					0.0007580500889616815
AYPEYLLTF	9	Unmodified	_AYPEYLLTF_					0	0	0		PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.7850341796875	2	558.784233	1115.55391	0.4589	0.00025642	-0.046343	-2.5896E-05	0.41255	0.00023053	558.7848345280522	83.415	1.8007	83.398	83.031	84.832	-0.016823					281	76	6	0	0	0	2.2223E-07	9	21777	21736;21777;21821;21829;21875;21919;21966;22013;22124		171.47	0	1	32157000			3894	13040	1971	1971	5113;5114;5115;5116;5117;5118;5119;5120;5121	5114					0.0007580500889616815
AYPEYLLTF	9	Unmodified	_AYPEYLLTF_					0	0	0		PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.782470703125	2	558.784233	1115.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.77	1	87.767	87.267	88.267	-0.0028381								0	0	0	0.21009	1	23142	23142		19.257	0	1				3895	13040	1971	1971	5122	5122					0.0007580500889616815
AYPFLSTKM	9	Unmodified	_AYPFLSTKM_					0	0	0			REV__ENSG00000148826|ENST00000368592|NKX6-2	REV__ENSG00000148826|ENST00000368592|NKX6-2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7606811523438	2	529.272978	1056.5314	0.62496	0.00033077	-0.113	-5.9808E-05	0.51196	0.00027097	529.272975788923	37.883	1.0356	37.883	37.587	38.623	0					69	36	4	0	0	0	0.24581	1	7855	7855		16.942	1.0951	1	835660	+		3896	16437	1972	1972	5123	5123					0.005398823396262742
AYPFLSTKM	9	Unmodified	_AYPFLSTKM_					0	0	0			REV__ENSG00000148826|ENST00000368592|NKX6-2	REV__ENSG00000148826|ENST00000368592|NKX6-2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	529.272978	1056.5314	0.47121	0.0002494	-0.18185	-9.6247E-05	0.28936	0.00015315	529.272865982136	37.819	0.5694	37.91	37.667	38.237	0.090881	0.040593	-8.8159E-05	NaN	16.942	56	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	818000	+		3897	16437	1972	1972							0.005398823396262742
AYPFLSTKM	9	Unmodified	_AYPFLSTKM_					0	0	0			REV__ENSG00000148826|ENST00000368592|NKX6-2	REV__ENSG00000148826|ENST00000368592|NKX6-2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	529.272978	1056.5314	0.46649	0.0002469	-0.021746	-1.1509E-05	0.44475	0.00023539	529.2729485411213	37.717	0.64969	37.815	37.552	38.202	0.097527	-0.054559	8.1316E-05	NaN	16.942	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	890700	+		3898	16437	1972	1972							0.005398823396262742
AYPHNLMTF	9	Oxidation (M)	_AYPHNLM(Oxidation (M))TF_		AYPHNLM(1)TF		AYPHNLM(210)TF	0	0	1		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2588500976562	2	555.257859	1108.50117	0.42079	0.00023365	-0.5634	-0.00031283	-0.14261	-7.9186E-05	555.258619049684	44.37	2.4707	44.37	43.932	46.402	0					333	90	6	0	0	0	1.0663E-16	11	9830	9741;9782;9830;9880;9923;9966;10016;10135;10143;10200;10251		214.41	147.95	1	139980000			3899	858	1973	1973	5124;5125;5126;5127;5128;5129;5130;5131;5132;5133;5134	5126		108			-0.04874476325562682
AYPHNLMTF	9	Oxidation (M)	_AYPHNLM(Oxidation (M))TF_		AYPHNLM(1)TF		AYPHNLM(200)TF	0	0	1		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2590942382812	2	555.257859	1108.50117	0.39109	0.00021715	-0.48391	-0.0002687	-0.092822	-5.154E-05	555.2586866289291	44.08	2.5933	44.157	43.684	46.277	0.077515					310	94	6	0	0	0	1.5552E-11	11	9797	9652;9701;9750;9788;9797;9836;9887;10000;10007;10104;10156		198.25	143.48	1	141380000			3900	858	1973	1973	5135;5136;5137;5138;5139;5140;5141;5142;5143;5144;5145	5139		108			-0.04874476325562682
AYPHNLMTF	9	Oxidation (M)	_AYPHNLM(Oxidation (M))TF_		AYPHNLM(1)TF		AYPHNLM(180)TF	0	0	1		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2590942382812	2	555.257859	1108.50117	0.23812	0.00013222	-0.3807	-0.00021139	-0.14258	-7.9167E-05	555.2587445334523	44.001	2.2856	44.085	43.71	45.995	0.083992					310	84	6	0	0	0	6.1879E-11	11	9682	9636;9682;9723;9766;9816;9857;9901;10000;10030;10084;10134		183.04	141.08	1	167070000			3901	858	1973	1973	5146;5147;5148;5149;5150;5151;5152;5153;5154;5155;5156	5147		108			-0.04874476325562682
AYPILYMHF	9	Oxidation (M)	_AYPILYM(Oxidation (M))HF_		AYPILYM(1)HF		AYPILYM(80)HF	0	0	1		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.7866821289062	2	585.786253	1169.55795	0.20076	0.0001176	0.36124	0.00021161	0.562	0.00032921	585.7865446527534	61.723	1.1384	61.723	61.23	62.369	0					64	42	2	0	0	0	0.0096669	1	15120	15120		79.935	57.198	1	413940			3902	6248	1974	1974	5157	5157		737			-0.02004428769032529
AYPTDLYTI	9	Unmodified	_AYPTDLYTI_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;ENST00000473813.1_1_21:40582792-40590527:-|nuORF	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7322387695312	2	528.76604	1055.51753	0.49825	0.00026346	0.060415	3.1945E-05	0.55867	0.0002954	528.7662949582474	68.182	0.51974	68.182	67.997	68.517	0					22	19	2	0	0	0	0.10135	1	17226	17226		52.268	18.166	1	256850			3903	7548	1975	1975	5158	5158					-0.00801071887804028
AYPTDLYTI	9	Unmodified	_AYPTDLYTI_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;ENST00000473813.1_1_21:40582792-40590527:-|nuORF	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7324829101562	2	528.76604	1055.51753	0.39551	0.00020913	-0.084507	-4.4685E-05	0.311	0.00016445	528.7663268563324	68.187	0.46555	68.259	67.994	68.459	0.071938					25	16	2	0	0	0	0.1524	1	17205	17205		39.957	11.47	1	173280			3904	7548	1975	1975	5159	5159					-0.00801071887804028
AYPTDLYTI	9	Unmodified	_AYPTDLYTI_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;ENST00000473813.1_1_21:40582792-40590527:-|nuORF	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.76604	1055.51753	0.56037	0.0002963	-0.22357	-0.00011822	0.33679	0.00017809	528.7661762773827	68.297	0.38881	68.278	68.04	68.429	-0.019157	0.038407	-0.00014272	NaN	52.268	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234520			3905	7548	1975	1975							-0.00801071887804028
AYPTVKFYF	9	Unmodified	_AYPTVKFYF_					0	0	0		nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000418559.5_1_2:183617332-183641856:+|nuORF;ENST00000491074.5_1_2:183616895-183641856:+|nuORF	nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENST00000491074.5_1_2:183616895-183641856:+|nuORF	nc|ENSG00000077232|Q8IXB1-2|DNAJC10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.294921875	2	568.294768	1134.57498	0.22767	0.00012938	-0.16881	-9.5935E-05	0.058856	3.3448E-05	568.2946301416646	67.032	1.1699	67.032	66.453	67.623	0					114	40	4	0	0	0	0.012386	1	16823	16823		75.761	48.877	1	3703400			3906	1081;11173	1976	1976	5160	5160					0.013078151084073397
AYPTVKFYF	9	Unmodified	_AYPTVKFYF_					0	0	0		nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000418559.5_1_2:183617332-183641856:+|nuORF;ENST00000491074.5_1_2:183616895-183641856:+|nuORF	nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENST00000491074.5_1_2:183616895-183641856:+|nuORF	nc|ENSG00000077232|Q8IXB1-2|DNAJC10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2947998046875	2	568.294768	1134.57498	0.33537	0.00019059	-0.32272	-0.0001834	0.012648	7.1878E-06	568.294545197464	66.949	1.2219	67.033	66.441	67.663	0.083832					120	43	4	0	0	0	0.0059482	2	16777	16736;16777		85.642	58.758	1	4111500			3907	1081;11173	1976	1976	5161;5162	5162					0.013078151084073397
AYPTVKFYF	9	Unmodified	_AYPTVKFYF_					0	0	0		nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000418559.5_1_2:183617332-183641856:+|nuORF;ENST00000491074.5_1_2:183616895-183641856:+|nuORF	nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENST00000491074.5_1_2:183616895-183641856:+|nuORF	nc|ENSG00000077232|Q8IXB1-2|DNAJC10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2947998046875	2	568.294768	1134.57498	0.071523	4.0646E-05	-0.07793	-4.4287E-05	-0.0064074	-3.6413E-06	568.2947406222762	67.057	1.1872	67.04	66.457	67.644	-0.016304					123	41	5	0	0	0	0.012386	2	16810	16767;16810		75.761	48.877	1	4879800			3908	1081;11173	1976	1976	5163;5164	5164					0.013078151084073397
AYPYNFSNL	9	Unmodified	_AYPYNFSNL_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.75634765625	2	544.756007	1087.49746	0.49989	0.00027232	0.1658	9.0318E-05	0.66568	0.00036264	544.756303692222	66.804	1.1017	66.804	66.266	67.368	0					117	38	5	0	0	0	5.0285E-07	3	16754	16704;16754;16807		160.52	105.74	1	3623500			3909	6783	1977	1977	5165;5166;5167	5166					-0.042788228277458984
AYPYNFSNL	9	Unmodified	_AYPYNFSNL_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7562866210938	2	544.756007	1087.49746	0.60257	0.00032825	0.03731	2.0325E-05	0.63988	0.00034858	544.7562066425629	66.718	1.0824	66.802	66.192	67.274	0.083832					120	38	4	0	0	0	6.1526E-05	4	16711	16666;16711;16715;16763		147.06	97.505	1	3064500			3910	6783	1977	1977	5168;5169;5170;5171	5169					-0.042788228277458984
AYPYNFSNL	9	Unmodified	_AYPYNFSNL_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.75634765625	2	544.756007	1087.49746	0.4572	0.00024906	0.2949	0.00016065	0.7521	0.00040971	544.7563422336452	66.823	1.2594	66.81	66.222	67.481	-0.013588					123	44	4	0	0	0	5.0285E-07	4	16741	16697;16741;16768;16794		160.52	105.74	1	3624800			3911	6783	1977	1977	5172;5173;5174;5175	5173					-0.042788228277458984
AYQDGLVEQL	10	Unmodified	_AYQDGLVEQL_					0	0	0		ENST00000452600.1_1_2:130987586-130988813:+|nuORF	ENST00000452600.1_1_2:130987586-130988813:+|nuORF	ENST00000452600.1_1_2:130987586-130988813:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2846069335938	2	568.285128	1134.5557	0.091508	5.2002E-05	-0.71203	-0.00040464	-0.62052	-0.00035263	568.2846484680027	27.372	0.75377	27.372	27.035	27.789	0					58	25	3	0	0	0	0.23397	1	4666	4666		28.495	0.86571	1	635830			3912	10660	1978	1978	5176	5176					-0.006191859731416116
AYQDGLVEQL	10	Unmodified	_AYQDGLVEQL_					0	0	0		ENST00000452600.1_1_2:130987586-130988813:+|nuORF	ENST00000452600.1_1_2:130987586-130988813:+|nuORF	ENST00000452600.1_1_2:130987586-130988813:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2845458984375	2	568.285128	1134.5557	0.1547	8.7916E-05	-0.67599	-0.00038416	-0.52129	-0.00029624	568.2846094313439	27.367	0.7048	27.346	27.1	27.805	-0.021412					52	24	3	0	0	0	0.18128	1	4657	4657		34.932	0.53034	1	668470			3913	10660	1978	1978	5177	5177					-0.006191859731416116
AYQHLFYLL	9	Unmodified	_AYQHLFYLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3140258789062	2	584.313492	1166.61243	0.10648	6.2218E-05	1.2088	0.00070635	1.3153	0.00076856	584.3143731172505	73.542	1.2626	73.542	73.218	74.481	0					97	43	3	0	0	0	0.0014051	3	18794	18748;18794;18933		117.6	46.734	1	15872000			3914	4321;7415	1979	1979	5178;5179;5180	5179					0.03578906374059443
AYQHLFYLL	9	Unmodified	_AYQHLFYLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3139038085938	2	584.313492	1166.61243	0.15728	9.1903E-05	1.3309	0.00077764	1.4881	0.00086954	584.3143923858916	73.558	1.3211	73.612	73.2	74.521	0.053833					107	46	3	0	0	0	0.0014051	1	18778	18778		117.6	46.734	1	15127000			3915	4321;7415	1979	1979	5181	5181					0.03578906374059443
AYQHLFYLL	9	Unmodified	_AYQHLFYLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3137817382812	2	584.313492	1166.61243	0.27986	0.00016352	1.1789	0.00068887	1.4588	0.0008524	584.3143010039946	73.666	1.5205	73.635	73.152	74.673	-0.030663					113	54	3	0	0	0	0.00207	2	18797	18753;18797		109.63	38.765	1	15747000			3916	4321;7415	1979	1979	5182;5183	5183					0.03578906374059443
AYQIPRTFTL	10	Unmodified	_AYQIPRTFTL_					0	0	0		ENSG00000033327|ENST00000361507|GAB2;nc|ENSG00000033327|Q9UQC2-2|GAB2	ENSG00000033327|ENST00000361507|GAB2	ENSG00000033327|ENST00000361507|GAB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2158203125	3	403.892396	1208.65536	-0.23922	-9.6618E-05	2.9359	0.0011858	2.6966	0.0010892	404.2283730546582	22.408	0.22708	22.408	22.278	22.505	0					10	7	2	0	0	0	0.31926	1	3120	3120		3.0723	0.44103	1	28471			3917	561	1980	1980	5184	5184					0.059376764314720276
AYQKQPTIF	9	Unmodified	_AYQKQPTIF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2950439453125	2	548.295299	1094.57605	0.27632	0.00015151	0.1646	9.0248E-05	0.44092	0.00024176	548.2952932377134	41.437	0.37892	41.437	41.152	41.531	0					20	13	2	0	0	0	0.0042138	1	8931	8931		92.653	56.526	1	605910			3918	4449	1981	1981	5185	5185					0.032540294773070855
AYQKQPTIF	9	Unmodified	_AYQKQPTIF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.295166015625	2	548.295299	1094.57605	0.30674	0.00016819	0.31842	0.00017459	0.62516	0.00034277	548.2952640019414	41.002	0.58941	41.099	40.832	41.422	0.096622					30	21	2	0	0	0	0.0042138	1	8816	8816		92.653	52.704	1	470930			3919	4449	1981	1981	5186	5186					0.032540294773070855
AYQKQPTIF	9	Unmodified	_AYQKQPTIF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.295299	1094.57605	0.45449	0.0002492	0.16149	8.8542E-05	0.61598	0.00033774	548.2952309645493	41.156	0.42609	41.246	41.002	41.429	0.090248	-0.01453	-4.9174E-05	NaN	92.653	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	531530			3920	4449	1981	1981							0.032540294773070855
AYQLMTDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))TDVF_		AYQLM(1)TDVF		AYQLM(130)TDVF	0	0	1		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2576904296875	2	552.257525	1102.5005	0.41684	0.0002302	0.073964	4.0847E-05	0.4908	0.00027105	552.257498684573	65.538	1.1838	65.538	65.157	66.341	0					111	42	4	0	0	0	0.00014042	3	16336	16288;16336;16381		134.3	70.549	1	4706400			3921	707	1982	1982	5187;5188;5189	5188		92			-0.04665315765282685
AYQLMTDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))TDVF_		AYQLM(1)TDVF		AYQLM(130)TDVF	0	0	1		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2578125	2	552.257525	1102.5005	0.3783	0.00020892	0.10851	5.9925E-05	0.48681	0.00026884	552.2575332291603	65.49	1.1212	65.479	65.048	66.169	-0.01133					120	40	5	0	0	0	0.00014042	3	16336	16291;16336;16387		134.3	72.938	1	4809700			3922	707	1982	1982	5190;5191;5192	5191		92			-0.04665315765282685
AYQLMVDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))VDVF_		AYQLM(1)VDVF		AYQLM(140)VDVF	0	0	1		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;nc|ENSG00000134644|Q14671-4|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.2680053710938	2	551.267893	1100.52123	0.46571	0.00025673	-0.078565	-4.331E-05	0.38715	0.00021342	551.2678310092305	75.131	0.92189	75.131	74.847	75.769	0					91	32	4	0	0	0	0.00012782	1	19263	19263		136.33	96.376	1	1828800			3923	3799	1983	1983	5193	5193		475			-0.025007253856074385
AYQLMVDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))VDVF_		AYQLM(1)VDVF		AYQLM(150)VDVF	0	0	1		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;nc|ENSG00000134644|Q14671-4|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2681884765625	2	551.267893	1100.52123	0.46351	0.00025552	-0.22099	-0.00012182	0.24252	0.00013369	551.2677572727467	75.115	0.88968	75.168	74.865	75.755	0.052361					90	32	4	0	0	0	4.3382E-05	1	19240	19240		149.99	110.04	1	1921500			3924	3799	1983	1983	5194	5194		475			-0.025007253856074385
AYQLMVDVF	9	Oxidation (M)	_AYQLM(Oxidation (M))VDVF_		AYQLM(1)VDVF		AYQLM(140)VDVF	0	0	1		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;nc|ENSG00000134644|Q14671-4|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.2681884765625	2	551.267893	1100.52123	0.63401	0.00034951	-0.2587	-0.00014261	0.37531	0.00020689	551.2677953533878	75.176	0.85003	75.144	74.868	75.718	-0.031479					82	31	4	0	0	0	0.00012782	1	19278	19278		136.33	96.376	1	2001600			3925	3799	1983	1983	5195	5195		475			-0.025007253856074385
AYQLRNLVF	9	Unmodified	_AYQLRNLVF_					0	0	0			REV__nc|ENSG00000165475|Q9Y2S2-2|CRYL1	REV__nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.78564453125	2	562.316566	1122.61858	0.43702	0.00024575	2.0608	0.0011588	2.4978	0.0014046	562.3166319678012	65.634	0.16381	65.623	65.53	65.694	-0.01133					8	5	2	0	0	0	0.21137	1	16364	16364		18.135	0	1	94411	+		3926	17238	1984	1984	5196	5196					0.06217424605551969
AYQSIQNYL	9	Unmodified	_AYQSIQNYL_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.27490234375	2	550.274564	1098.53457	0.52758	0.00029031	0.15553	8.5586E-05	0.68311	0.0003759	550.2745101678157	62.65	1.0706	62.747	62.442	63.512	0.096985					105	38	4	0	0	0	1.7475E-06	1	15483	15483		171.09	99.952	1	3224800			3927	3755	1985	1985	5197	5197					-0.010751512820206699
AYQSIQNYL	9	Unmodified	_AYQSIQNYL_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2747802734375	2	550.274564	1098.53457	0.38681	0.00021285	0.47732	0.00026266	0.86413	0.00047551	550.2745693817499	62.762	0.91364	62.753	62.465	63.379	-0.0085564					115	33	5	0	0	0	6.8263E-10	1	15524	15524		185.05	113.92	1	3336400			3928	3755	1985	1985	5198	5198					-0.010751512820206699
AYRGAEEEW	9	Unmodified	_AYRGAEEEW_					0	0	0			REV__ENST00000529712.5_1_11:47736424-47736610:-|nuORF	REV__ENST00000529712.5_1_11:47736424-47736610:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3050537109375	2	555.74617	1109.47779	0.34966	0.00019432	1.9538	0.0010858	2.3035	0.0012802	555.7472894770652	66.822	0.50307	66.822	66.545	67.048	0					18	17	2	0	0	0	0.2451	1	16743	16743		10.824	2.9138	1	116960	+		3929	22000	1986	1986	5199	5199					-0.07257198838510703
AYRGTHYLRGV	11	Unmodified	_AYRGTHYLRGV_					0	0	0		ENST00000563918.5_1_16:67210716-67213197:-|nuORF	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.8522033691406	3	431.566794	1291.67855	-0.16539	-7.1375E-05	-1.3	-0.00056103	-1.4654	-0.00063241	431.9005932512404	39.385	0.38335	39.478	39.307	39.69	0.09267					21	13	2	0	0	0	0.33287	1	8344	8344		2.8433	0.99905	1	89024			3930	11938	1987	1987	5200	5200					0.044381152687719805
AYRPSEDF	8	Unmodified	_AYRPSEDF_					0	0	0		ENST00000354393.6_1_10:69866438-69902705:+|nuORF	ENST00000354393.6_1_10:69866438-69902705:+|nuORF	ENST00000354393.6_1_10:69866438-69902705:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2439270019531	2	492.724707	983.43486	0.65831	0.00032437	1.9621	0.00096675	2.6204	0.0012911	492.7257344298898	78.326	0.54711	78.384	78.058	78.605	0.058151					30	19	2	0	0	0	0.34131	1	20305	20305		12.532	0.89125	1	163890			3931	9595	1988	1988	5201	5201					-0.057519688959587256
AYRPSEDF	8	Unmodified	_AYRPSEDF_					0	0	0		ENST00000354393.6_1_10:69866438-69902705:+|nuORF	ENST00000354393.6_1_10:69866438-69902705:+|nuORF	ENST00000354393.6_1_10:69866438-69902705:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	492.724707	983.43486	0.76297	0.00037593	2.0796	0.0010247	2.8425	0.0014006	492.7258038568578	78.375	0.52514	78.375	78.12	78.645	0	-0.0045716	5.3546E-05	NaN	12.532	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188790			3932	9595	1988	1988							-0.057519688959587256
AYRQGHFTY	9	Unmodified	_AYRQGHFTY_					0	0	0		nc|ENSG00000163029|Q96SB8-2|SMC6;ENSG00000163029|ENST00000448223|SMC6;SMC6|p.E524Vfs*8|1|0.07|ENSG00000163029|chr2:17715020-17715021|-/GGAAAGAGTTA|frameshift_variant	nc|ENSG00000163029|Q96SB8-2|SMC6	nc|ENSG00000163029|Q96SB8-2|SMC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.3088989257812	2	571.772522	1141.53049	0.075169	4.298E-05	0.59344	0.00033931	0.66861	0.00038229	571.7725506381666	27.547	0.63152	27.526	27.291	27.923	-0.021412					47	21	3	0	0	0	0.24993	1	4703	4703		8.7454	0.83525	1	243590			3933	5643	1989	1989	5202	5202					-0.034611959850508356
AYRQGHFTY	9	Unmodified	_AYRQGHFTY_					0	0	0		nc|ENSG00000163029|Q96SB8-2|SMC6;ENSG00000163029|ENST00000448223|SMC6;SMC6|p.E524Vfs*8|1|0.07|ENSG00000163029|chr2:17715020-17715021|-/GGAAAGAGTTA|frameshift_variant	nc|ENSG00000163029|Q96SB8-2|SMC6	nc|ENSG00000163029|Q96SB8-2|SMC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3091430664062	2	571.772522	1141.53049	-0.093408	-5.3408E-05	1.0737	0.0006139	0.98027	0.00056049	571.7727327260394	27.591	0.63737	27.58	27.374	28.011	-0.011562					49	21	3	0	0	0	0.25123	1	4700	4700		8.1555	1.5252	1	257780			3934	5643	1989	1989	5203	5203					-0.034611959850508356
AYRRIFQKF	9	Unmodified	_AYRRIFQKF_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2365417480469	3	410.236497	1227.68766	0.11695	4.7979E-05	0.031216	1.2806E-05	0.14817	6.0785E-05	410.2366508686313	33.653	2.6545	33.653	32.811	35.466	0					234	79	5	0	0	0	0.0011817	2	6536	6536;6664		106.94	86.359	1	10099000			3935	5309	1990	1990	5204;5205	5204					0.08292508625117989
AYRRIFQKF	9	Unmodified	_AYRRIFQKF_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.8512573242188	2	614.851107	1227.68766	0.42875	0.00026362	-0.49482	-0.00030424	-0.066065	-4.062E-05	614.8507479628718	33.656	0.82642	33.656	33.393	34.22	0					64	29	3	0	0	0	0.18803	1	6591	6591		25.399	16.016	1	724460			3936	5309	1990	1990	5206	5206					0.08292508625117989
AYRRIFQKF	9	Unmodified	_AYRRIFQKF_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2364807128906	3	410.236497	1227.68766	0.37266	0.00015288	-0.20327	-8.3389E-05	0.16939	6.9489E-05	410.23658552425707	33.446	2.0189	33.513	33.154	35.173	0.06636					216	72	5	0	0	0	0.155	2	6641	6641;6712		21.537	11.993	1	11121000			3937	5309	1990	1990	5207;5208	5207					0.08292508625117989
AYRRIFQKF	9	Unmodified	_AYRRIFQKF_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2361755371094	3	410.236497	1227.68766	-0.07203	-2.9549E-05	0.25577	0.00010492	0.18374	7.5375E-05	410.23677072817503	33.483	1.967	33.55	33.055	35.022	0.0667					215	64	5	0	0	0	0.0046874	4	6453	6453;6600;6679;6737		70.332	49.751	1	11428000			3938	5309	1990	1990	5209;5210;5211;5212	5209					0.08292508625117989
AYRRIFQKF	9	Unmodified	_AYRRIFQKF_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	614.851107	1227.68766	0.47597	0.00029265	-0.50433	-0.00031009	-0.028356	-1.7435E-05	614.8507077641731	33.409	0.91	33.475	33.266	34.176	0.06636	-0.080599	-0.00021153	NaN	25.399	70	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	691200			3939	5309	1990	1990							0.08292508625117989
AYRRIFQKF	9	Unmodified	_AYRRIFQKF_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	614.851107	1227.68766	0.058448	3.5937E-05	-0.079533	-4.8901E-05	-0.021085	-1.2964E-05	614.8509851465252	33.469	0.72375	33.536	33.297	34.021	0.0667	-0.019937	0.00031084	NaN	25.399	60	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	669060			3940	5309	1990	1990							0.08292508625117989
AYRVLMEQ	8	Unmodified	_AYRVLMEQ_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8212890625	2	505.260402	1008.50625	0.11406	5.763E-05	-2.3967	-0.0012109	-2.2826	-0.0011533	505.7609739654266	41.174	0.55957	41.174	40.822	41.382	0					30	20	2	0	0	0	0.32886	1	8774	8774		15.847	3.3156	1	146090			3941	7973	1991	1991	5213	5213					0.0023382753705618597
AYSAKIALF	9	Unmodified	_AYSAKIALF_					0	0	0		ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2819519042969	2	492.28166	982.548768	0.48771	0.00024009	0.0041484	2.0422E-06	0.49186	0.00024213	492.2817267950083	57.314	1.1128	57.314	56.962	58.075	0					115	40	4	0	0	0	1.2283E-05	3	13817	13771;13817;13866		155.03	105.09	1	10825000			3942	7762	1992	1992	5214;5215;5216	5215					0.05679545936948216
AYSAKIALF	9	Unmodified	_AYSAKIALF_					0	0	0		ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2820129394531	2	492.28166	982.548768	0.38064	0.00018738	1.9935	0.00098138	2.3742	0.0011688	492.28175461023744	57.161	1.3523	57.24	56.829	58.182	0.078674					174	49	7	0	0	0	1.2283E-05	3	13784	13733;13784;13827		155.03	100.25	1	11966000			3943	7762	1992	1992	5217;5218;5219	5218					0.05679545936948216
AYSAKIALF	9	Unmodified	_AYSAKIALF_					0	0	0		ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2820739746094	2	492.28166	982.548768	0.2075	0.00010215	2.0771	0.0010225	2.2846	0.0011247	492.281885877244	57.366	1.3001	57.349	56.975	58.275	-0.0172					171	47	7	0	0	0	1.2283E-05	3	13826	13783;13826;13876		155.03	100.25	1	11674000			3944	7762	1992	1992	5220;5221;5222	5221					0.05679545936948216
AYSDFPGSVLF	11	Unmodified	_AYSDFPGSVLF_					0	0	0		nc|ENSG00000110077|Q9H2W1|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.7904663085938	2	601.790047	1201.56554	0.69403	0.00041766	0.15787	9.5005E-05	0.85191	0.00051267	601.7900659510348	85.056	1.0197	85.056	84.72	85.74	0					86	39	3	0	0	0	0.042182	1	22405	22405		55.503	37.368	1	305530			3945	12646	1993	1993	5223	5223					-0.02717997967761221
AYSDFPGSVLF	11	Unmodified	_AYSDFPGSVLF_					0	0	0		nc|ENSG00000110077|Q9H2W1|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.7942504882812	2	601.790047	1201.56554	0.71704	0.00043151	-0.052841	-3.1799E-05	0.6642	0.00039971	601.7899443911734	84.984	0.81438	85.065	84.724	85.539	0.080879					71	31	3	0	0	0	0.30767	1	22428	22428		21.537	12.154	1	301380			3946	12646	1993	1993	5224	5224					-0.02717997967761221
AYSDFPGSVLF	11	Unmodified	_AYSDFPGSVLF_					0	0	0		nc|ENSG00000110077|Q9H2W1|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.7904663085938	2	601.790047	1201.56554	0.58048	0.00034933	-0.067886	-4.0853E-05	0.5126	0.00030847	601.7900538843471	85.072	0.84507	85.059	84.738	85.583	-0.01284					63	33	2	0	0	0	0.12898	1	22320	22320		66.457	47.2	1	363750			3947	12646	1993	1993	5225	5225					-0.02717997967761221
AYSDGHFLF	9	Unmodified	_AYSDGHFLF_					0	0	0		ENSG00000149256|ENST00000278550|TENM4;TENM4|p.I1369Cfs*22|1|0.07|ENSG00000149256|chr11:78708465-78708466|-/AAGCCTTTAAAGAGCA|frameshift_variant	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7432861328125	2	528.742899	1055.47125	0.48873	0.00025841	0.61497	0.00032516	1.1037	0.00058357	528.7430759761618	59.008	0.73049	59.008	58.682	59.412	0					63	25	3	0	0	0	0.0014051	2	14320	14320;14372		117.6	75.504	1	921230			3948	4852	1994	1994	5226;5227	5226					-0.054270919992632116
AYSDGHFLF	9	Unmodified	_AYSDGHFLF_					0	0	0		ENSG00000149256|ENST00000278550|TENM4;TENM4|p.I1369Cfs*22|1|0.07|ENSG00000149256|chr11:78708465-78708466|-/AAGCCTTTAAAGAGCA|frameshift_variant	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7435913085938	2	528.742899	1055.47125	0.46006	0.00024326	0.61533	0.00032535	1.0754	0.00056861	528.7430662132397	58.852	0.7335	58.943	58.645	59.379	0.091305					63	25	3	0	0	0	0.00033206	2	14268	14268;14321		131.3	89.203	1	945460			3949	4852	1994	1994	5228;5229	5228					-0.054270919992632116
AYSDGHFLF	9	Unmodified	_AYSDGHFLF_					0	0	0		ENSG00000149256|ENST00000278550|TENM4;TENM4|p.I1369Cfs*22|1|0.07|ENSG00000149256|chr11:78708465-78708466|-/AAGCCTTTAAAGAGCA|frameshift_variant	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7435302734375	2	528.742899	1055.47125	0.58073	0.00030706	0.36531	0.00019316	0.94605	0.00050022	528.7429762863454	59.002	0.7698	58.988	58.746	59.515	-0.014267					63	26	3	0	0	0	0.00207	2	14325	14325;14368		109.63	77.324	1	1036900			3950	4852	1994	1994	5230;5231	5230					-0.054270919992632116
AYSEIAYLF	9	Unmodified	_AYSEIAYLF_					0	0	0		ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8634033203125	2	538.768583	1075.52261	0.60555	0.00032625	-1.0035	-0.00054063	-0.39791	-0.00021438	538.7680767767008	82.524	0.32047	82.524	82.358	82.679	0					17	11	2	0	0	0	0.20651	1	21553	21553		20.454	3.3671	1	89370			3951	3814	1995	1995	5232	5232					-0.012127680251978745
AYSEIAYLF	9	Unmodified	_AYSEIAYLF_					0	0	0		ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	538.768583	1075.52261	0.6335	0.00034131	-1.2749	-0.00068686	-0.64137	-0.00034555	538.767267574938	82.6	0.37122	82.579	82.396	82.768	-0.020584	0.027257	-0.00023358	NaN	20.454	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197060			3952	3814	1995	1995							-0.012127680251978745
AYSESEWGP	9	Unmodified	_AYSESEWGP_					0	0	0		ENSG00000101349|ENST00000353224|PAK5	ENSG00000101349|ENST00000353224|PAK5	ENSG00000101349|ENST00000353224|PAK5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.81298828125	2	513.214172	1024.41379	0.51154	0.00026253	1.2398	0.0006363	1.7514	0.00089884	513.2147649266518	66.224	0.53297	66.224	65.981	66.514	0					31	18	2	0	0	0	0.24739	1	16546	16546		4.756	0	1	281860			3953	1689	1996	1996	5233	5233					-0.0974397899547057
AYSEYVNNF	9	Unmodified	_AYSEYVNNF_					0	0	0		ENST00000523711.5_1_8:1824717-1874701:+|nuORF;nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10	ENST00000523711.5_1_8:1824717-1874701:+|nuORF	ENST00000523711.5_1_8:1824717-1874701:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3041381835938	2	553.743096	1105.47164	0.47548	0.0002633	-0.91538	-0.00050688	-0.4399	-0.00024359	553.7429371343358	55.179	0.51653	55.179	54.943	55.46	0					33	18	3	0	0	0	0.25323	1	13104	13104		10.074	1.4806	1	429530			3954	1908	1997	1997	5234	5234					-0.07687717070029976
AYSEYVNNF	9	Unmodified	_AYSEYVNNF_					0	0	0		ENST00000523711.5_1_8:1824717-1874701:+|nuORF;nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10	ENST00000523711.5_1_8:1824717-1874701:+|nuORF	ENST00000523711.5_1_8:1824717-1874701:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.743096	1105.47164	0.6106	0.00033812	-0.69504	-0.00038487	-0.084434	-4.6755E-05	553.7427939102586	55.099	0.45119	55.17	54.971	55.422	0.070889	-0.058386	0.00010996	NaN	10.074	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414890			3955	1908	1997	1997							-0.07687717070029976
AYSFSRKI	8	Unmodified	_AYSFSRKI_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;ENST00000538600.1_1_12:6631091-6632090:+|nuORF	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7835388183594	2	486.269084	970.523616	0.38857	0.00018895	-1.1318	-0.00055034	-0.7432	-0.00036139	486.26840535239904	88.735	0.78453	88.735	88.288	89.072	0					94	38	3	0	0	0	0.34185	1	23492	23492		10.183	0.83596	1	219760			3956	420	1998	1998	5235	5235					0.0371749113437545
AYSHKSTLVQ	10	Unmodified	_AYSHKSTLVQ_					0	0	0		nc|ENSG00000197128|Q68DY9-2|ZNF772;ENSG00000197128|ENST00000356584|ZNF772;nc|ENSG00000197128|Q68DY9|ZNF772	nc|ENSG00000197128|Q68DY9-2|ZNF772	nc|ENSG00000197128|Q68DY9-2|ZNF772	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.279541015625	2	567.301113	1132.58767	0.061495	3.4886E-05	2.504	0.0014205	2.5655	0.0014554	567.3023657357784	65.308	0.6929	65.308	64.884	65.577	0					41	24	2	0	0	0	0.2623	1	16248	16248		32.786	7.7947	1	230850			3957	7933	1999	1999	5236	5236					0.026682265006456873
AYSHLRYVF	9	Unmodified	_AYSHLRYVF_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.S1928Lfs*17|1|0.08|ENSG00000083857|chr4:186620804-186620804|A/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3010864257812	2	578.300916	1154.58728	0.45076	0.00026067	-0.27056	-0.00015646	0.1802	0.00010421	578.3006752856047	44.579	0.57521	44.579	44.28	44.855	0					39	20	2	0	0	0	0.00045155	2	9869	9869;9920		129.77	93.645	1	2079700			3958	1234	2000	2000	5237;5238	5237					0.01616851571452571
AYSHLRYVF	9	Unmodified	_AYSHLRYVF_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.S1928Lfs*17|1|0.08|ENSG00000083857|chr4:186620804-186620804|A/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.30078125	2	578.300916	1154.58728	0.39741	0.00022983	-0.88341	-0.00051087	-0.48599	-0.00028105	578.3003226151214	44.194	0.89761	44.262	43.701	44.599	0.068569					65	33	2	0	0	0	0.0013683	1	9775	9775		118.07	74.21	1	2302300			3959	1234	2000	2000	5239	5239					0.01616851571452571
AYSHLRYVF	9	Unmodified	_AYSHLRYVF_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.S1928Lfs*17|1|0.08|ENSG00000083857|chr4:186620804-186620804|A/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.30078125	2	578.300916	1154.58728	0.25982	0.00015026	-0.7201	-0.00041643	-0.46028	-0.00026618	578.3003802719359	44.1	0.85498	44.184	43.71	44.565	0.083996					60	31	2	0	0	0	0.0024096	2	9742	9742;9792		106.94	70.813	1	2064800			3960	1234	2000	2000	5240;5241	5240					0.01616851571452571
AYSIVAGVF	9	Unmodified	_AYSIVAGVF_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENST00000562209.1_1_16:88713507-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.7528381347656	2	463.752736	925.490919	0.0011877	5.5081E-07	-0.08275	-3.8376E-05	-0.081563	-3.7825E-05	463.75270417919444	75.265	1.2341	75.265	74.934	76.168	0					96	44	4	0	0	0	2.4965E-07	5	19333	19290;19333;19382;19429;19478		170.4	41.197	1	8462800			3961	670	2001	2001	5242;5243;5244;5245;5246	5243					0.025192840115323634
AYSIVAGVF	9	Unmodified	_AYSIVAGVF_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENST00000562209.1_1_16:88713507-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7527770996094	2	463.752736	925.490919	0.069585	3.227E-05	0.64635	0.00029975	0.71594	0.00033202	463.7526540146655	75.233	1.2422	75.286	74.946	76.188	0.052361					138	45	4	0	0	0	2.3185E-05	4	19263	19263;19311;19352;19406		153.26	38.318	1	7464300			3962	670	2001	2001	5247;5248;5249;5250	5247					0.025192840115323634
AYSIVAGVF	9	Unmodified	_AYSIVAGVF_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENST00000562209.1_1_16:88713507-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7528381347656	2	463.752736	925.490919	0.38865	0.00018024	-0.44729	-0.00020743	-0.058642	-2.7195E-05	463.75254644387076	75.299	1.2119	75.267	74.978	76.189	-0.031487					96	44	4	0	0	0	2.3185E-05	4	19327	19285;19327;19366;19410		153.26	38.318	1	8480100			3963	670	2001	2001	5251;5252;5253;5254	5252					0.025192840115323634
AYSLNFPLL	9	Unmodified	_AYSLNFPLL_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.287353515625	2	519.286943	1036.55933	0.47918	0.00024883	0.29364	0.00015248	0.77282	0.00040132	519.2871623982196	89.806	1.1606	89.806	89.253	90.414	0					250	86	4	0	0	0	1.8851E-11	3	23773	23735;23773;23814		197.17	142.39	1	1473700			3964	4301	2002	2002	5255;5256;5257	5256					0.042515285913850676
AYSLNFPLL	9	Unmodified	_AYSLNFPLL_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2874145507812	2	519.286943	1036.55933	0.44179	0.00022942	0.29914	0.00015534	0.74094	0.00038476	519.2871523189705	89.796	1.0375	89.795	89.267	90.305	-0.00080872					255	81	4	0	0	0	9.0063E-24	4	23737	23700;23737;23775;23811		232.51	232.51	1	2212700			3965	4301	2002	2002	5258;5259;5260;5261	5259					0.042515285913850676
AYSLNFPLL	9	Unmodified	_AYSLNFPLL_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	519.286943	1036.55933	0.40606	0.00021086	0.41572	0.00021588	0.82178	0.00042674	519.2872080621066	89.687	1.0698	89.778	89.27	90.34	0.090569	-0.015219	8.2452E-05	NaN	232.51	224	77	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2191300			3966	4301	2002	2002							0.042515285913850676
AYSLTYNTI	9	Unmodified	_AYSLTYNTI_					0	0	0		ENSG00000130766|ENST00000253063|SESN2	ENSG00000130766|ENST00000253063|SESN2	ENSG00000130766|ENST00000253063|SESN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2634887695312	2	523.263665	1044.51278	0.096026	5.0247E-05	-0.055651	-2.912E-05	0.040375	2.1127E-05	523.2635407917055	60.171	0.4367	60.171	59.977	60.413	0					33	15	3	0	0	0	0.0013683	1	14708	14708		118.07	65.8	1	960500			3967	3511	2003	2003	5262	5262					-0.0076995603058094275
AYSLTYNTI	9	Unmodified	_AYSLTYNTI_					0	0	0		ENSG00000130766|ENST00000253063|SESN2	ENSG00000130766|ENST00000253063|SESN2	ENSG00000130766|ENST00000253063|SESN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2637939453125	2	523.263665	1044.51278	-0.23267	-0.00012175	0.60849	0.0003184	0.37583	0.00019666	523.2638105404313	60.091	0.48561	60.187	59.961	60.447	0.095093					36	17	3	0	0	0	0.0013683	2	14651	14651;14718		118.07	72.362	1	788280			3968	3511	2003	2003	5263;5264	5263					-0.0076995603058094275
AYSLTYNTI	9	Unmodified	_AYSLTYNTI_					0	0	0		ENSG00000130766|ENST00000253063|SESN2	ENSG00000130766|ENST00000253063|SESN2	ENSG00000130766|ENST00000253063|SESN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.263427734375	2	523.263665	1044.51278	0.26531	0.00013883	-0.13316	-6.9678E-05	0.13215	6.9148E-05	523.2634905862175	60.212	0.43214	60.201	59.997	60.429	-0.011486					36	15	3	0	0	0	1.2283E-05	1	14705	14705		155.03	73.413	1	808890			3969	3511	2003	2003	5265	5265					-0.0076995603058094275
AYSPAIQMF	9	Oxidation (M)	_AYSPAIQM(Oxidation (M))F_		AYSPAIQM(1)F		AYSPAIQM(65)F	0	0	1		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2467041015625	2	522.24696	1042.47937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.855	1	56.855	56.355	57.355	0								0	0	0	0.035558	1	13681	13681		65.235	21.377	1				3970	1773	2004	2004	5266	5266		216			-0.040172810741296416
AYSPAIQMF	9	Oxidation (M)	_AYSPAIQM(Oxidation (M))F_		AYSPAIQM(1)F		AYSPAIQM(85)F	0	0	1		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2470703125	2	522.24696	1042.47937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.765	1	56.844	56.344	57.344	0.078674								0	0	0	0.0067712	1	13650	13650		85.272	33.004	1				3971	1773	2004	2004	5267	5267		216			-0.040172810741296416
AYSPAIQMF	9	Oxidation (M)	_AYSPAIQM(Oxidation (M))F_		AYSPAIQM(1)F		AYSPAIQM(96)F	0	0	1		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2474365234375	2	522.24696	1042.47937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.568	1	56.549	56.049	57.049	-0.019081								0	0	0	0.00075361	1	13584	13584		96.111	43.843	1				3972	1773	2004	2004	5268	5268		216			-0.040172810741296416
AYSPRFLYI	9	Unmodified	_AYSPRFLYI_					0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.3057861328125	2	565.305667	1128.59678	0.48354	0.00027335	-0.10072	-5.6937E-05	0.38282	0.00021641	565.3055674173517	64.481	0.80531	64.481	64.212	65.017	0					79	29	4	0	0	0	0.0098873	2	16019	16019;16061		79.596	51.102	1	3674600			3973	3594	2005	2005	5269;5270	5269					0.03762619856979654
AYSPRFLYI	9	Unmodified	_AYSPRFLYI_					0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.305908203125	2	565.305667	1128.59678	0.54247	0.00030666	-0.23988	-0.0001356	0.3026	0.00017106	565.3055271372504	64.378	0.92171	64.471	64.116	65.038	0.09288					93	33	4	0	0	0	0.0046246	2	15981	15981;16021		89.401	53.274	1	3590900			3974	3594	2005	2005	5271;5272	5271					0.03762619856979654
AYSPRFLYI	9	Unmodified	_AYSPRFLYI_					0	0	0		nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENSG00000131844|ENST00000340941|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	nc|ENSG00000131844|Q9HCC0-2|MCCC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.3057861328125	2	565.305667	1128.59678	0.44367	0.00025081	-0.66387	-0.00037529	-0.2202	-0.00012448	565.3055929343082	64.482	1.2281	64.472	63.822	65.05	-0.0095291					104	44	4	0	0	0	0.0098873	2	16016	16016;16068		79.596	47.291	1	3893300			3975	3594	2005	2005	5273;5274	5273					0.03762619856979654
AYSPRHYVI	9	Unmodified	_AYSPRHYVI_					0	0	0		ENST00000495856.1_1_1:95507120-95538397:-|nuORF;ENSG00000172339|ENST00000370205|ALG14	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3301391601562	2	553.293091	1104.57163	0.20304	0.00011234	1.054	0.00058315	1.257	0.00069549	553.2935473018382	33.127	0.46909	33.127	32.924	33.393	0					39	16	3	0	0	0	0.15943	1	6426	6426		39.95	14.55	1	254160			3976	6624	2006	2006	5275	5275					0.023525650544115706
AYSPRHYVI	9	Unmodified	_AYSPRHYVI_					0	0	0		ENST00000495856.1_1_1:95507120-95538397:-|nuORF;ENSG00000172339|ENST00000370205|ALG14	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3301391601562	2	553.293091	1104.57163	0.27547	0.00015241	0.77429	0.00042841	1.0498	0.00058082	553.2934265251415	33.017	0.42131	33.072	32.891	33.312	0.055309					32	14	3	0	0	0	0.25123	1	6396	6396		12.241	2.1667	1	218390			3977	6624	2006	2006	5276	5276					0.023525650544115706
AYSPRHYVI	9	Unmodified	_AYSPRHYVI_					0	0	0		ENST00000495856.1_1_1:95507120-95538397:-|nuORF;ENSG00000172339|ENST00000370205|ALG14	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3305053710938	2	553.293091	1104.57163	0.2316	0.00012814	0.91282	0.00050506	1.1444	0.0006332	553.2937757745417	33.051	0.55721	33.105	32.818	33.375	0.054371					42	19	4	0	0	0	0.23235	1	6409	6409		21.537	2.28	1	338960			3978	6624	2006	2006	5277	5277					0.023525650544115706
AYSQFFHSL	9	Unmodified	_AYSQFFHSL_					0	0	0		nc|ENSG00000114853|Q9UFB7-2|ZBTB47;ENSG00000114853|ENST00000232974|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2825927734375	2	550.263999	1098.51345	0.49022	0.00026975	0.70073	0.00038559	1.1909	0.00065534	550.2641984321779	58.24	0.44322	58.325	58.053	58.496	0.085621					27	15	2	0	0	0	0.0073901	1	14114	14114		83.429	41.589	1	520090			3979	2587	2007	2007	5278	5278					-0.03187116590856931
AYSQFFHSL	9	Unmodified	_AYSQFFHSL_					0	0	0		nc|ENSG00000114853|Q9UFB7-2|ZBTB47;ENSG00000114853|ENST00000232974|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2823486328125	2	550.263999	1098.51345	0.72898	0.00040113	0.16288	8.9626E-05	0.89186	0.00049076	550.2637386198877	58.599	0.44565	58.585	58.331	58.777	-0.014267					34	15	3	0	0	0	0.0041491	1	14220	14220		93.166	34.487	1	413900			3980	2587	2007	2007	5279	5279					-0.03187116590856931
AYSQFFHSL	9	Unmodified	_AYSQFFHSL_					0	0	0		nc|ENSG00000114853|Q9UFB7-2|ZBTB47;ENSG00000114853|ENST00000232974|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	550.263999	1098.51345	0.51176	0.00028161	1.0839	0.00059641	1.5956	0.00087802	550.2642201843133	58.418	0.46671	58.418	58.187	58.654	0	-0.024396	0.00037489	NaN	93.166	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420210			3981	2587	2007	2007							-0.03187116590856931
AYSRVQYQF	9	Unmodified	_AYSRVQYQF_					0	0	0		nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3	nc|ENSG00000137936|O75815-3|BCAR3	nc|ENSG00000137936|O75815-3|BCAR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.2882080078125	2	581.288005	1160.56146	0.26822	0.00015591	-0.098829	-5.7448E-05	0.16939	9.8463E-05	581.2878987570953	43.265	0.46017	43.265	43.034	43.494	0					37	16	3	0	0	0	0.0042138	1	9503	9503		92.653	48.795	1	717900			3982	4094	2008	2008	5280	5280					-0.012400426708154555
AYSRVQYQF	9	Unmodified	_AYSRVQYQF_					0	0	0		nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3	nc|ENSG00000137936|O75815-3|BCAR3	nc|ENSG00000137936|O75815-3|BCAR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.2879638671875	2	581.288005	1160.56146	0.24164	0.00014046	0.14819	8.6142E-05	0.38983	0.0002266	581.2880116719738	42.835	0.53731	42.921	42.704	43.242	0.085197					41	19	3	0	0	0	0.012386	1	9373	9373		75.761	37.585	1	690240			3983	4094	2008	2008	5281	5281					-0.012400426708154555
AYSRVQYQF	9	Unmodified	_AYSRVQYQF_					0	0	0		nc|ENSG00000137936|O75815-3|BCAR3;ENSG00000137936|ENST00000260502|BCAR3	nc|ENSG00000137936|O75815-3|BCAR3	nc|ENSG00000137936|O75815-3|BCAR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.2885131835938	2	581.288005	1160.56146	0.076607	4.4531E-05	0.24266	0.00014105	0.31927	0.00018559	581.288049493062	42.743	0.46244	42.835	42.633	43.095	0.091362					45	16	4	0	0	0	0.018449	1	9349	9349		66.457	32.055	1	737130			3984	4094	2008	2008	5282	5282					-0.012400426708154555
AYSSAVNILL	10	Unmodified	_AYSSAVNILL_					0	0	0		ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1	ENSG00000141458|ENST00000269228|NPC1	ENSG00000141458|ENST00000269228|NPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3108520507812	2	525.795132	1049.57571	0.36623	0.00019256	1.5898	0.00083589	1.956	0.0010285	525.7960190575876	73.128	0.44131	73.181	72.948	73.389	0.053833					25	15	2	0	0	0	0.31237	1	18687	18687		16.149	2.6412	1	210630			3985	4383	2009	2009	5283	5283					0.052906097574805244
AYSSAVNILL	10	Unmodified	_AYSSAVNILL_					0	0	0		ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1	ENSG00000141458|ENST00000269228|NPC1	ENSG00000141458|ENST00000269228|NPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3102416992188	2	525.795132	1049.57571	0.58899	0.00030969	0.79772	0.00041944	1.3867	0.00072913	525.7956067858921	73.279	0.41916	73.249	72.98	73.399	-0.029305					24	14	2	0	0	0	0.31237	1	18664	18664		16.149	2.6412	1	168270			3986	4383	2009	2009	5284	5284					0.052906097574805244
AYSSVTYGF	9	Unmodified	_AYSSVTYGF_					0	0	0		ENST00000265734.8_1_7:92241582-92241702:-|nuORF	ENST00000265734.8_1_7:92241582-92241702:-|nuORF	ENST00000265734.8_1_7:92241582-92241702:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7876892089844	2	497.729458	993.444362	-0.0535	-2.6628E-05	1.7461	0.00086907	1.6926	0.00084244	497.729483174341	34.405	0.11149	34.405	34.306	34.418	0					6	3	2	0	0	0	0.24739	1	6773	6773		8.5933	0.68312	1	25748			3987	9053	2010	2010	5285	5285					-0.05262200610422951
AYSSYVHQY	9	Unmodified	_AYSSYVHQY_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58538022-58538124:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2510375976562	2	559.251089	1116.48762	0.42007	0.00023492	-0.37242	-0.00020828	0.047646	2.6646E-05	559.2508466305377	36.571	1.1958	36.571	36.256	37.452	0					110	42	4	0	0	0	6.1879E-11	3	7457	7413;7457;7510		183.04	111.12	1	4933500			3988	768	2011	2011	5286;5287;5288	5287					-0.06596010833141008
AYSSYVHQY	9	Unmodified	_AYSSYVHQY_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58538022-58538124:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2509155273438	2	559.251089	1116.48762	0.48375	0.00027054	-0.42927	-0.00024007	0.054481	3.0469E-05	559.2508031170956	36.421	1.233	36.504	36.233	37.466	0.082359					116	44	4	0	0	0	1.5552E-11	3	7420	7374;7420;7465		198.25	126.33	1	5491100			3989	768	2011	2011	5289;5290;5291	5290					-0.06596010833141008
AYSTVRSHL	9	Unmodified	_AYSTVRSHL_					0	0	0		nc|ENSG00000117009|O15229-2|KMO;ENSG00000117009|ENST00000366559|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7688598632812	2	517.274898	1032.53524	0.28237	0.00014606	-0.74858	-0.00038722	-0.46622	-0.00024116	517.2741933157077	24.325	0.8792	24.325	23.669	24.548	0					60	29	3	0	0	0	0.25346	1	3656	3656		10.8	2.644	1	366710			3990	12670;12671	2012	2012	5292	5292					0.020276881577274253
AYSVEHNQL	9	Unmodified	_AYSVEHNQL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.P1391Qfs*3|1|0.19|ENSG00000117523|chr1:171541644-171541648|CAAGA/-|frameshift_variant;PRRC2C|p.I2096Ffs*11|1|0.06|ENSG00000117523|chr1:171566405-171566406|-/ATTCT|frameshift_variant;PRRC2C|p.I863Kfs*12|1|0.09|ENSG00000117523|chr1:171540060-171540063|TCAG/-|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7572021484375	2	530.756538	1059.49852	0.47608	0.00025268	0.21492	0.00011407	0.691	0.00036675	530.7566929533425	31.837	0.31707	31.837	31.636	31.953	0					17	10	2	0	0	0	0.0080395	1	5995	5995		82.529	27.756	1	474580			3991	12673	2013	2013	5293	5293					-0.028846084588622034
AYSVEHNQL	9	Unmodified	_AYSVEHNQL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.P1391Qfs*3|1|0.19|ENSG00000117523|chr1:171541644-171541648|CAAGA/-|frameshift_variant;PRRC2C|p.I2096Ffs*11|1|0.06|ENSG00000117523|chr1:171566405-171566406|-/ATTCT|frameshift_variant;PRRC2C|p.I863Kfs*12|1|0.09|ENSG00000117523|chr1:171540060-171540063|TCAG/-|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7570190429688	2	530.756538	1059.49852	0.44224	0.00023472	-0.25492	-0.0001353	0.18733	9.9424E-05	530.7563142467507	31.763	0.37004	31.805	31.652	32.022	0.042364					23	12	3	0	0	0	0.0059482	1	5978	5978		85.642	39.621	1	590050			3992	12673	2013	2013	5294	5294					-0.028846084588622034
AYSVEHNQL	9	Unmodified	_AYSVEHNQL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.P1391Qfs*3|1|0.19|ENSG00000117523|chr1:171541644-171541648|CAAGA/-|frameshift_variant;PRRC2C|p.I2096Ffs*11|1|0.06|ENSG00000117523|chr1:171566405-171566406|-/ATTCT|frameshift_variant;PRRC2C|p.I863Kfs*12|1|0.09|ENSG00000117523|chr1:171540060-171540063|TCAG/-|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7559814453125	2	530.756538	1059.49852	0.4948	0.00026262	0.1322	7.0166E-05	0.627	0.00033278	530.7564791328956	31.718	0.32905	31.759	31.587	31.916	0.040991					20	11	2	0	0	0	0.0042138	1	5958	5958		92.653	54.679	1	525760			3993	12673	2013	2013	5295	5295					-0.028846084588622034
AYTLAKAYF	9	Unmodified	_AYTLAKAYF_					0	0	0		nc|ENSG00000094880|Q9UJX2-2|CDC23;ENST00000482948.5_1_5:137536747-137548896:-|nuORF;ENSG00000094880|ENST00000394886|CDC23;CDC23|p.M84T|1|0.26|ENSG00000094880|chr5:138206668-138206668|A/G|missense_variant;ENST00000483961.6_1_5:137537116-137548843:-|nuORF	nc|ENSG00000094880|Q9UJX2-2|CDC23	nc|ENSG00000094880|Q9UJX2-2|CDC23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.26611328125	2	524.279118	1046.54368	0.3275	0.0001717	-1.3371	-0.00070102	-1.0096	-0.00052932	524.2784940609688	53.549	0.25748	53.605	53.509	53.766	0.056259					11	9	2	0	0	0	0.068501	1	12657	12657		46.021	15.796	1	137640			3994	1440	2014	2014	5296	5296					0.02227242074309288
AYTPFHAVL	9	Unmodified	_AYTPFHAVL_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7715759277344	2	509.77146	1017.52837	0.66413	0.00033856	-0.25394	-0.00012945	0.41019	0.0002091	509.77124621506334	55.812	1.3098	55.883	55.565	56.875	0.070885					118	48	5	0	0	0	2.3185E-05	4	13339	13298;13339;13392;13440		153.26	117.22	1	13122000			3995	4165	2015	2015	5297;5298;5299;5300	5298					0.0203037527712695
AYTPFHAVL	9	Unmodified	_AYTPFHAVL_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7714538574219	2	509.77146	1017.52837	0.73366	0.000374	-0.37883	-0.00019312	0.35483	0.00018088	509.77113047238595	55.954	1.3573	55.935	55.616	56.973	-0.019081					127	49	6	0	0	0	2.4965E-07	4	13392	13344;13392;13443;13496		170.4	134.35	1	12285000			3996	4165	2015	2015	5301;5302;5303;5304	5302					0.0203037527712695
AYTSQFVSL	9	Unmodified	_AYTSQFVSL_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.81072998046875	2	508.258382	1014.50221	0.44092	0.0002241	0.38886	0.00019764	0.82978	0.00042174	508.25829133886725	63.589	0.74093	63.589	63.364	64.105	0					70	26	3	0	0	0	0.089483	1	15769	15769		51.415	28.679	1	1312800			3997	8066	2016	2016	5305	5305					-0.004459386849816838
AYTSQFVSL	9	Unmodified	_AYTSQFVSL_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8106384277344	2	508.258382	1014.50221	0.41242	0.00020962	0.52368	0.00026616	0.9361	0.00047578	508.2582341922097	63.474	0.83364	63.57	63.339	64.173	0.095722					67	29	3	0	0	0	0.089483	1	15736	15736		43.982	16.353	1	1234900			3998	8066	2016	2016	5306	5306					-0.004459386849816838
AYTSQFVSL	9	Unmodified	_AYTSQFVSL_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.81097412109375	2	508.258382	1014.50221	0.45731	0.00023243	0.2127	0.00010811	0.67	0.00034054	508.25800721166985	63.621	0.72336	63.612	63.379	64.102	-0.0085564					59	25	3	0	0	0	0.12056	1	15755	15755		51.415	28.679	1	1339200			3999	8066	2016	2016	5307	5307					-0.004459386849816838
AYTVGLSLLT	10	Unmodified	_AYTVGLSLLT_					0	0	0		ENSG00000172938|ENST00000309106|MRGPRD	ENSG00000172938|ENST00000309106|MRGPRD	ENSG00000172938|ENST00000309106|MRGPRD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2875366210938	2	519.297507	1036.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.473	1	89.564	89.064	90.064	0.090569								0	0	0	0.33661	1	23672	23672		20.454	1.1966	1				4000	6676	2017	2017	5308	5308					0.06363493900221329
AYVEKVEKL	9	Unmodified	_AYVEKVEKL_					0	0	0		ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1;AMOTL1|p.Y691Sfs*12|1|0.22|ENSG00000166025|chr11:94859652-94859652|A/-|frameshift_variant	ENSG00000166025|ENST00000433060|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3590087890625	2	539.810782	1077.60701	0.51165	0.0002762	0.21091	0.00011385	0.72256	0.00039005	539.8106885088391	31.926	0.40019	31.926	31.719	32.119	0					29	13	3	0	0	0	0.08842	1	5984	5984		61.09	19.25	1	601250			4001	6023	2018	2018	5309	5309					0.0713118279156788
AYVEKVEKL	9	Unmodified	_AYVEKVEKL_					0	0	0		ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1;AMOTL1|p.Y691Sfs*12|1|0.22|ENSG00000166025|chr11:94859652-94859652|A/-|frameshift_variant	ENSG00000166025|ENST00000433060|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8104248046875	2	539.810782	1077.60701	0.53465	0.00028861	0.032267	1.7418E-05	0.56691	0.00030603	539.810612346828	31.833	0.46101	31.875	31.652	32.113	0.042364					29	15	2	0	0	0	0.10059	1	6035	6035		38.176	5.3899	1	769260			4002	6023	2018	2018	5310	5310					0.0713118279156788
AYVEKVEKL	9	Unmodified	_AYVEKVEKL_					0	0	0		ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1;AMOTL1|p.Y691Sfs*12|1|0.22|ENSG00000166025|chr11:94859652-94859652|A/-|frameshift_variant	ENSG00000166025|ENST00000433060|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8116455078125	2	539.810782	1077.60701	0.55646	0.00030038	0.60135	0.00032462	1.1578	0.000625	539.8109134693505	31.795	0.38715	31.836	31.672	32.059	0.040991					23	13	2	0	0	0	0.018042	1	6008	6008		67.081	15.451	1	652800			4003	6023	2018	2018	5311	5311					0.0713118279156788
AYVEKVERL	9	Unmodified	_AYVEKVERL_					0	0	0		ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8140258789062	2	553.813856	1105.61316	0.41904	0.00023207	-0.13552	-7.5052E-05	0.28353	0.00015702	553.8136991315718	32.78	0.64516	32.78	32.5	33.145	0					53	22	3	0	0	0	0.0099976	1	6309	6309		79.427	31.833	1	996540			4004	2542	2019	2019	5312	5312					0.06457701023077789
AYVEKVERL	9	Unmodified	_AYVEKVERL_					0	0	0		ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.81396484375	2	553.813856	1105.61316	0.47811	0.00026479	-0.24394	-0.0001351	0.23417	0.00012969	553.8136462495265	32.636	0.74857	32.692	32.395	33.143	0.055309					56	26	3	0	0	0	0.015535	1	6271	6271		70.929	30.689	1	1067000			4005	2542	2019	2019	5313	5313					0.06457701023077789
AYVEKVERL	9	Unmodified	_AYVEKVERL_					0	0	0		ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8138427734375	2	553.813856	1105.61316	0.30829	0.00017073	-0.096726	-5.3568E-05	0.21156	0.00011717	553.8136991880358	32.691	0.70612	32.745	32.469	33.175	0.054371					57	25	3	0	0	0	0.021777	1	6233	6233		79.427	39.188	1	923960			4006	2542	2019	2019	5314	5314					0.06457701023077789
AYVELVHHI	9	Unmodified	_AYVELVHHI_					0	0	0		ENST00000482967.5_1_20:31946851-31989286:-|nuORF;ENST00000461710.5_1_20:31948117-31960625:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1	ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000482967.5_1_20:31946851-31989286:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3455200195312	2	540.795466	1079.57638	0.35299	0.0001909	0.5293	0.00028624	0.88229	0.00047714	540.7955861409798	41.984	0.40001	41.984	41.851	42.251	0					30	13	3	0	0	0	0.0055862	1	9105	9105		97.075	61.03	1	900970			4007	1693	2020	2020	5315	5315					0.03977449197191163
AYVELVHHI	9	Unmodified	_AYVELVHHI_					0	0	0		ENST00000482967.5_1_20:31946851-31989286:-|nuORF;ENST00000461710.5_1_20:31948117-31960625:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1	ENST00000482967.5_1_20:31946851-31989286:-|nuORF	ENST00000482967.5_1_20:31946851-31989286:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.9302978515625	2	540.795466	1079.57638	0.56793	0.00030714	0.28013	0.00015149	0.84806	0.00045863	540.795726582701	41.813	0.40457	41.904	41.754	42.158	0.090252					20	15	2	0	0	0	0.0061338	1	9005	9005		85.357	56.87	1	1117500			4008	1693	2020	2020	5316	5316					0.03977449197191163
AYVFAEWVWLW	11	Unmodified	_AYVFAEWVWLW_					0	0	0			REV__ENSG00000128519|ENST00000249284|TAS2R16	REV__ENSG00000128519|ENST00000249284|TAS2R16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.57965087890625	3	490.579929	1468.71796	-0.040068	-1.9656E-05	-0.50261	-0.00024657	-0.54267	-0.00026623	490.5798363468237	13.73	0.72161	13.625	13.357	14.079	-0.10466					87	25	5	0	0	0	0.4745	1	562	562		1.4551	0.12547	1	1600100	+		4009	15374	2021	2021	5317	5317					0.002348224996467252
AYVGDLQTL	9	Unmodified	_AYVGDLQTL_					0	0	0		ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.25775146484375	2	490.258382	978.502212	-0.10414	-5.1055E-05	-1.5813	-0.00077525	-1.6855	-0.00082631	490.2573759326506	60.119	0.46504	60.119	59.922	60.387	0					32	16	3	0	0	0	0.00078391	2	14679	14669;14679		125.53	52.561	1	1020700			4010	824	2022	2022	5318;5319	5319					0.012100613149868877
AYVGDLQTL	9	Unmodified	_AYVGDLQTL_					0	0	0		ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2579650878906	2	490.258382	978.502212	-0.37948	-0.00018604	-0.85697	-0.00042013	-1.2364	-0.00060618	490.2577312168594	59.999	0.48784	60.094	59.907	60.395	0.095089					39	17	3	0	0	0	0.03332	1	14625	14625		78.728	32.707	1	732920			4011	824	2022	2022	5320	5320					0.012100613149868877
AYVGDLQTL	9	Unmodified	_AYVGDLQTL_					0	0	0		ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	490.258382	978.502212	0.11375	5.5765E-05	-1.9725	-0.00096704	-1.8588	-0.00091128	490.25729053606915	60.084	0.49227	60.073	59.886	60.378	-0.011486	-0.022385	-0.00055045	NaN	125.53	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	970160			4012	824	2022	2022							0.012100613149868877
AYVGSAVMTDE	11	Unmodified	_AYVGSAVMTDE_					0	0	0		nc|ENSG00000115762|Q96CS7-6|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2	nc|ENSG00000115762|Q96CS7-6|PLEKHB2	nc|ENSG00000115762|Q96CS7-6|PLEKHB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7557373046875	2	571.755346	1141.49614	0.24138	0.00013801	2.4958	0.001427	2.7372	0.001565	571.756678934522	31.608	0.38313	31.649	31.419	31.802	0.040991					27	13	3	0	0	0	0.35522	1	5955	5955		17.113	0.1706	1	511680			4013	12664	2023	2023	5321	5321					-0.06894824978849101
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(200)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.7672119140625	2	560.765852	1119.51715	0.29832	0.00016729	-0.37748	-0.00021168	-0.079161	-4.4391E-05	560.766810236722	31.678	2.5056	31.678	31.333	33.839	0					379	89	6	0	0	0	1.474E-11	14	5940	5891;5940;5990;6038;6088;6137;6179;6221;6264;6307;6353;6403;6452;6565		198.52	154.11	1	163860000			4014	4254	2024	2024	5322;5323;5324;5325;5326;5327;5328;5329;5330;5331;5332;5333;5334;5335	5323		543			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(160)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.765380859375	2	560.765852	1119.51715	-0.38756	-0.00021733	0.1604	8.9947E-05	-0.22716	-0.00012738	560.7659187968194	34.829	2.8229	34.829	33.484	36.307	0					250	102	4	0	0	0	4.6753E-07	8	6874	6678;6874;6922;6973;7023;7071;7121;7174		161.89	116.19	1	1529000			4015	4254	2024	2024	5336;5337;5338;5339;5340;5341;5342;5343	5337		543			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(44)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.290771484375	2	560.765852	1119.51715	-0.030584	-1.7151E-05	0.11366	6.3734E-05	0.083071	4.6583E-05	560.765906077347	39.022	1.5419	39.022	38.741	40.283	0					76	55	2	0	0	0	0.12846	1	8418	8418		44.407	32.767	1	245470			4016	4254	2024	2024	5344	5344		543			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(200)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.7669067382812	2	560.765852	1119.51715	0.36019	0.00020198	-0.45194	-0.00025343	-0.09175	-5.1451E-05	560.7667244699634	31.649	2.304	31.691	31.322	33.626	0.042366					218	82	6	0	0	0	1.474E-11	14	5933	5883;5933;5977;6022;6065;6075;6123;6172;6216;6257;6300;6342;6394;6513		198.52	147.66	1	204870000			4017	4254	2024	2024	5345;5346;5347;5348;5349;5350;5351;5352;5353;5354;5355;5356;5357;5358	5346		543			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(160)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.764892578125	2	560.765852	1119.51715	-0.50307	-0.0002821	0.11068	6.2064E-05	-0.39239	-0.00022004	560.7658928674153	34.683	2.3958	34.758	33.659	36.055	0.075306					219	86	4	0	0	0	4.6753E-07	7	6858	6666;6858;6908;6951;7004;7056;7123		161.89	105.72	1	1635700			4018	4254	2024	2024	5359;5360;5361;5362;5363;5364;5365	5360		543			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(42)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.765869140625	2	560.765852	1119.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.479	1	41.569	41.069	42.069	0.090252								0	0	0	0.11822	1	8945	8945		42.095	24.982	1				4019	4254	2024	2024	5366	5366		543			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(200)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7671508789062	2	560.765852	1119.51715	0.25328	0.00014203	-0.19735	-0.00011067	0.055928	3.1363E-05	560.7669570236661	31.564	0.51749	31.605	31.255	31.772	0.040991					73	18	5	0	0	0	1.474E-11	3	5941	5855;5899;5941		198.52	151.6	1	181470000			4020	4254	2024	2024	5367;5368;5369	5369		543			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(220)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.76708984375	2	560.765852	1119.51715	0.29102	0.00016319	-0.36043	-0.00020212	-0.06942	-3.8928E-05	560.7667239263288	31.859	2.2127	31.9	31.447	33.659	0.040989					292	79	6	0	0	0	4.8903E-17	12	6029	5984;6029;6053;6073;6115;6157;6199;6249;6298;6352;6403;6513		221	167.42	1	164030000			4021	4254	2024	2024	5370;5371;5372;5373;5374;5375;5376;5377;5378;5379;5380;5381	5371		543			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(160)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7651977539062	2	560.765852	1119.51715	-0.24299	-0.00013626	0.092105	5.1649E-05	-0.15089	-8.4613E-05	560.7658605336832	34.747	3.7359	34.824	33.644	37.38	0.077377					261	134	4	0	0	0	4.6753E-07	7	6889	6841;6889;6942;6990;7037;7095;7143		161.89	117.49	1	1379000			4022	4254	2024	2024	5382;5383;5384;5385;5386;5387;5388	5383		543			-0.03782770088673715
AYVIGLSSF	9	Unmodified	_AYVIGLSSF_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7582702636719	2	478.758018	955.501483	0.10974	5.2537E-05	2.6022	0.0012458	2.712	0.0012984	478.75814075797075	76.439	0.63755	76.439	76.22	76.858	0					63	22	4	0	0	0	0.055495	1	19704	19704		50.855	22.368	1	465070			4023	1868	2025	2025	5389	5389					0.021952666659558417
AYVIGLSSF	9	Unmodified	_AYVIGLSSF_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7579650878906	2	478.758018	955.501483	0.059318	2.8399E-05	0.27249	0.00013046	0.33181	0.00015886	478.75811585456137	76.433	0.61501	76.487	76.216	76.831	0.053421					40	21	2	0	0	0	0.055495	1	19669	19669		50.855	21.773	1	502770			4024	1868	2025	2025	5390	5390					0.021952666659558417
AYVIGLSSF	9	Unmodified	_AYVIGLSSF_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7581481933594	2	478.758018	955.501483	0.3823	0.00018303	0.017629	8.4398E-06	0.39993	0.00019147	478.7581413116244	76.484	0.80319	76.452	76.216	77.019	-0.031487					52	29	3	0	0	0	0.079066	1	19696	19696		42.095	18.074	1	434030			4025	1868	2025	2025	5391	5391					0.021952666659558417
AYVLNIVRF	9	Unmodified	_AYVLNIVRF_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.8220825195312	2	547.821484	1093.62842	0.25803	0.00014135	0.29172	0.00015981	0.54975	0.00030117	547.821835276001	69.602	1.7578	69.602	69.285	71.043	0					166	63	5	0	0	0	4.4046E-07	4	17592	17543;17592;17642;17692		162.95	99.987	1	17282000			4026	4482	2026	2026	5392;5393;5394;5395	5393					0.08534612610924341
AYVLNIVRF	9	Unmodified	_AYVLNIVRF_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.8221435546875	2	547.821484	1093.62842	0.38289	0.00020975	0.20502	0.00011232	0.58791	0.00032207	547.8217909238509	69.585	1.7102	69.651	69.312	71.022	0.066048					160	60	5	0	0	0	5.2996E-06	4	17605	17520;17560;17605;17657		156.16	99.979	1	16762000			4027	4482	2026	2026	5396;5397;5398;5399	5398					0.08534612610924341
AYVLNIVRF	9	Unmodified	_AYVLNIVRF_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8219604492188	2	547.821484	1093.62842	0.41889	0.00022947	0.1451	7.949E-05	0.56399	0.00030896	547.8217440908772	69.654	1.7277	69.632	69.324	71.052	-0.022087					164	62	5	0	0	0	5.2996E-06	4	17583	17538;17583;17627;17674		156.16	100.08	1	16806000			4028	4482	2026	2026	5400;5401;5402;5403	5401					0.08534612610924341
AYVMGMQQSL	10	Unmodified	_AYVMGMQQSL_					0	0	0			REV__nc|ENSG00000138798|P01133-2|EGF	REV__nc|ENSG00000138798|P01133-2|EGF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8164672851562	2	564.264827	1126.5151	0.34362	0.00019389	-2.995	-0.00169	-2.6514	-0.0014961	564.2626870862314	49.723	0.43163	49.723	49.462	49.894	0					19	15	2	0	0	0	0.28569	1	11440	11440		20.415	0.78858	1	177610	+		4029	15959	2027	2027	5404	5404					-0.04309566888764493
AYVPGFAHI	9	Unmodified	_AYVPGFAHI_					0	0	0		ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2851257324219	2	487.758352	973.502152	0.2197	0.00010716	0.52008	0.00025367	0.73977	0.00036083	487.758455238018	55.509	0.7148	55.509	55.221	55.935	0					77	25	4	0	0	0	0.11279	1	13239	13239		45.75	32.242	1	3910500			4030	2154	2028	2028	5405	5405					0.01434106105648425
AYVPGFAHI	9	Unmodified	_AYVPGFAHI_					0	0	0		ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.285400390625	2	487.758352	973.502152	0.49293	0.00024043	0.37988	0.00018529	0.87281	0.00042572	487.75839906971004	55.445	0.80402	55.515	55.216	56.02	0.070889					88	29	4	0	0	0	0.19319	1	13197	13197		28.173	11.231	1	4113300			4031	2154	2028	2028	5406	5406					0.01434106105648425
AYVSLHERG	9	Unmodified	_AYVSLHERG_					0	0	0			REV__nc|ENSG00000148053|Q16620-7|NTRK2	REV__nc|ENSG00000148053|Q16620-7|NTRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7692260742188	2	516.267073	1030.51959	0.25022	0.00012918	0.53836	0.00027794	0.78858	0.00040712	516.7691556707756	24.215	0.82394	24.143	23.646	24.47	-0.072559					45	27	2	0	0	0	0.31038	1	3714	3714		7.2892	0.56607	1	138140	+		4032	16412	2029	2029	5407	5407					0.005554016406676965
AYVSTLTDM	9	Unmodified	_AYVSTLTDM_					0	0	0		ENSG00000196132|ENST00000328439|MYT1;nc|ENSG00000196132|Q01538-2|MYT1	ENSG00000196132|ENST00000328439|MYT1	ENSG00000196132|ENST00000328439|MYT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.67169189453125	2	500.736425	999.458298	0.21118	0.00010575	1.6405	0.00082144	1.8516	0.00092719	500.7371521401711	16.041	0.5431	15.978	15.781	16.324	-0.062534					32	18	2	0	0	0	0.25622	1	1195	1195		7.2892	0.93513	1	41989			4033	7825	2030	2030	5408	5408					-0.041452911736541864
AYVVFVTTL	9	Unmodified	_AYVVFVTTL_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7892761230469	2	506.789318	1011.56408	0.29671	0.00015037	-0.20213	-0.00010244	0.094579	4.7932E-05	506.78909935858735	80.51	0.5691	80.51	80.24	80.809	0					40	22	3	0	0	0	0.18943	1	20917	20917		30.225	13.283	1	303250			4034	403	2031	2031	5409	5409					0.058764127341419226
AYVVFVTTL	9	Unmodified	_AYVVFVTTL_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2791748046875	2	506.789318	1011.56408	0.18247	9.2472E-05	0.19315	9.7888E-05	0.37562	0.00019036	506.78940739492214	80.387	0.56407	80.452	80.241	80.805	0.065094					31	21	2	0	0	0	0.21137	1	20839	20839		24.674	7.7316	1	303580			4035	403	2031	2031	5410	5410					0.058764127341419226
AYVVFVTTL	9	Unmodified	_AYVVFVTTL_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7890625	2	506.789318	1011.56408	0.30223	0.00015317	-0.31343	-0.00015884	-0.011194	-5.6732E-06	506.7891064872711	80.517	0.40957	80.49	80.294	80.704	-0.026825					31	14	3	0	0	0	0.23775	1	20948	20948		18.135	5.6034	1	243290			4036	403	2031	2031	5411	5411					0.058764127341419226
AYVVKVFSL	9	Unmodified	_AYVVKVFSL_					0	0	0		ENSG00000125730|ENST00000245907|C3;ENST00000598805.2_1_19:6686670-6693093:-|nuORF	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.304931640625	2	513.305136	1024.59572	0.53692	0.0002756	-1.3047	-0.00066973	-0.76781	-0.00039412	513.3044290619728	64.55	0.38281	64.55	64.316	64.699	0					31	13	3	0	0	0	0.0042138	2	16025	16025;16071		92.653	59.868	1	2320100			4037	3225	2032	2032	5412;5413	5412					0.08440405488090619
AYVVKVFSL	9	Unmodified	_AYVVKVFSL_					0	0	0		ENSG00000125730|ENST00000245907|C3;ENST00000598805.2_1_19:6686670-6693093:-|nuORF	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.293212890625	2	513.305136	1024.59572	0.4224	0.00021682	-1.4738	-0.0007565	-1.0514	-0.00053968	513.3043366149408	64.454	0.37973	64.547	64.309	64.688	0.09288					36	13	3	0	0	0	0.016723	1	16033	16033		69.105	36.319	1	2431900			4038	3225	2032	2032	5414	5414					0.08440405488090619
AYVVKVFSL	9	Unmodified	_AYVVKVFSL_					0	0	0		ENSG00000125730|ENST00000245907|C3;ENST00000598805.2_1_19:6686670-6693093:-|nuORF	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2933349609375	2	513.305136	1024.59572	0.39217	0.0002013	-1.471	-0.00075506	-1.0788	-0.00055375	513.304368696997	64.57	0.49203	64.56	64.289	64.781	-0.0095291					40	17	3	0	0	0	0.0037772	1	16058	16058		96.111	63.325	1	2251700			4039	3225	2032	2032	5415	5415					0.08440405488090619
AYYCCVLEKQ	10	Unmodified	_AYYCCVLEKQ_					0	0	0			REV__nc|ENSG00000182022|Q7LFX5-2|CHST15	REV__nc|ENSG00000182022|Q7LFX5-2|CHST15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.7654418945312	2	610.277934	1218.54132	0.68235	0.00041642	0.60638	0.00037006	1.2887	0.00078648	610.2797976339518	33.992	0.77182	33.992	33.564	34.336	0					74	27	4	0	0	0	0.33817	1	6590	6590		14.838	4.7643	1	442070	+		4040	23116	2033	2033	5416	5416					-0.05921297717281959
AYYFERDIKG	10	Unmodified	_AYYFERDIKG_					0	0	0		ENSG00000184292|ENST00000371225|TACSTD2	ENSG00000184292|ENST00000371225|TACSTD2	ENSG00000184292|ENST00000371225|TACSTD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5009765625	3	421.211906	1260.61389	-0.27882	-0.00011744	-0.10372	-4.3688E-05	-0.38254	-0.00016113	421.2118139539351	14.327	0.41204	14.26	14.098	14.51	-0.066067					33	14	3	0	0	0	0.32167	1	680	680		0.12286	0	1	49287			4041	7444	2034	2034	5417	5417					-0.005995043278744561
AYYGQHFVP	9	Unmodified	_AYYGQHFVP_					0	0	0		ENSG00000283434|ENST00000637986|CSNKA2IP	ENSG00000283434|ENST00000637986|CSNKA2IP	ENSG00000283434|ENST00000637986|CSNKA2IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.80078125	2	541.258717	1080.50288	0.50855	0.00027526	-1.3234	-0.00071629	-0.81484	-0.00044104	541.2580712764158	31.275	0.46164	31.316	31.098	31.559	0.040991					38	16	3	0	0	0	0.25417	1	5880	5880		8.5933	0.68312	1	286070			4042	8759	2035	2035	5418	5418					-0.03415099245307829
AYYGQHFVP	9	Unmodified	_AYYGQHFVP_					0	0	0		ENSG00000283434|ENST00000637986|CSNKA2IP	ENSG00000283434|ENST00000637986|CSNKA2IP	ENSG00000283434|ENST00000637986|CSNKA2IP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.258717	1080.50288	0.26425	0.00014303	-0.45747	-0.00024761	-0.19322	-0.00010458	541.2585422391987	31.391	0.4084	31.391	31.118	31.526	0	0.018484	0.00031054	NaN	8.5933	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255650			4043	8759	2035	2035							-0.03415099245307829
AYYNRYCLS	9	Unmodified	_AYYNRYCLS_					0	0	0			REV__ENSG00000166147|ENST00000316623|FBN1	REV__ENSG00000166147|ENST00000316623|FBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.7617797851562	2	576.760766	1151.50698	0.25404	0.00014652	0.28525	0.00016452	0.53929	0.00031104	576.7610904304344	31.562	0.93194	31.603	31.419	32.351	0.040991					39	32	2	0	0	0	0.30623	1	5917	5917		7.9102	0.62092	1	642580	+		4044	17296	2036	2036	5419	5419					-0.06271377813891377
AYYNRYCLS	9	Unmodified	_AYYNRYCLS_					0	0	0			REV__ENSG00000166147|ENST00000316623|FBN1	REV__ENSG00000166147|ENST00000316623|FBN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	576.760766	1151.50698	0.25004	0.00014421	0.2619	0.00015105	0.51194	0.00029527	576.761005510701	31.786	1.1061	31.786	31.45	32.556	0	0.10423	4.5781E-05	NaN	7.9102	71	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	798370	+		4045	17296	2036	2036							-0.06271377813891377
AYYNRYCLS	9	Unmodified	_AYYNRYCLS_					0	0	0			REV__ENSG00000166147|ENST00000316623|FBN1	REV__ENSG00000166147|ENST00000316623|FBN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	576.760766	1151.50698	0.40305	0.00023247	0.11972	6.9049E-05	0.52277	0.00030151	576.7609966120291	31.614	1.0339	31.656	31.487	32.521	0.042366	-0.025744	-0.00011823	NaN	7.9102	64	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	641090	+		4046	17296	2036	2036							-0.06271377813891377
AYYPAQGVQQF	11	Unmodified	_AYYPAQGVQQF_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.3065185546875	2	636.306395	1270.59824	0.37849	0.00024083	-0.27323	-0.00017386	0.10526	6.6975E-05	636.3062737769222	57.582	0.68704	57.582	57.299	57.986	0					60	24	3	0	0	0	1.6621E-05	2	13898	13898;13948		118.07	98.706	1	1152400			4047	2591	2037	2037	5420;5421	5420					-0.02623790844904761
AYYPAQGVQQF	11	Unmodified	_AYYPAQGVQQF_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.3062744140625	2	636.306395	1270.59824	0.56311	0.00035831	-0.13675	-8.7013E-05	0.42636	0.0002713	636.3064103352369	57.37	1.256	57.455	57.184	58.44	0.085621					71	45	3	0	0	0	1.6621E-05	2	13874	13824;13874		118.07	98.706	1	1505200			4048	2591	2037	2037	5422;5423	5423					-0.02623790844904761
AYYPAQGVQQF	11	Unmodified	_AYYPAQGVQQF_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.306396484375	2	636.306395	1270.59824	0.52253	0.00033249	0.030468	1.9387E-05	0.55299	0.00035187	636.3065747497291	57.659	1.2646	57.641	57.364	58.628	-0.0172					80	46	3	0	0	0	1.6621E-05	2	13907	13907;13972		118.07	96.322	1	1017400			4049	2591	2037	2037	5424;5425	5424					-0.02623790844904761
AYYPYPLF	8	Unmodified	_AYYPYPLF_					0	0	0			REV__CON__P02668	REV__CON__P02668	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3182373046875	2	517.255111	1032.49567	0.42378	0.0002192	-3.27	-0.0016914	-2.8462	-0.0014722	517.2537494109986	72.543	0.54333	72.597	72.3	72.843	0.053833					27	19	2	0	0	0	0.33618	1	18533	18533		11.114	7.1701	1	95968	+	+	4050	13251	2038	2038	5426	5426					-0.019278318457281785
AYYPYPLF	8	Unmodified	_AYYPYPLF_					0	0	0			REV__CON__P02668	REV__CON__P02668	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	517.255111	1032.49567	0.39035	0.00020191	-3.8229	-0.0019774	-3.4325	-0.0017755	517.2534517552073	72.575	0.37106	72.546	72.396	72.767	-0.029305	-0.027352	0.00060742	NaN	6.3541	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160950	+	+	4051	13251	2038	2038							-0.019278318457281785
CAKRQWRQ	8	Unmodified	_CAKRQWRQ_					0	0	0		ENST00000411466.6_3_16:30709553-30715400:+|nuORF	ENST00000411466.6_3_16:30709553-30715400:+|nuORF	ENST00000411466.6_3_16:30709553-30715400:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.833984375	2	538.282534	1074.55052	0.12351	6.6484E-05	-1.0969	-0.00059042	-0.97336	-0.00052394	538.2820068698204	12.488	0.3742	12.391	12.206	12.58	-0.096607					25	11	3	0	0	0	0.34408	1	116	116		2.3027	0.4585	1	169620			4052	10268	2039	2039	5427	5427					0.01622276473904094
CAKRQWRQ	8	Unmodified	_CAKRQWRQ_					0	0	0		ENST00000411466.6_3_16:30709553-30715400:+|nuORF	ENST00000411466.6_3_16:30709553-30715400:+|nuORF	ENST00000411466.6_3_16:30709553-30715400:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8341064453125	2	538.282534	1074.55052	0.067465	3.6315E-05	-1.1625	-0.00062573	-1.095	-0.00058942	538.2818134140315	12.515	0.35693	12.447	12.313	12.67	-0.06806					23	11	3	0	0	0	0.34408	1	127	127		2.3027	2.3027	1	137450			4053	10268	2039	2039	5428	5428					0.01622276473904094
CANDRGFDLF	10	Unmodified	_CANDRGFDLF_					0	0	0			REV__ENSG00000067992|ENST00000379162|PDK3	REV__ENSG00000067992|ENST00000379162|PDK3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.2409057617188	2	579.255848	1156.49714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.405	1	98.466	97.966	98.966	0.061516								0	0	0	0.36922	1	26340	26340		6.7232	1.4263	1		+		4054	13697	2040	2040	5429	5429					-0.07484565819254385
CAPTHWASL	9	Unmodified	_CAPTHWASL_					0	0	0		ENST00000461108.5_1_3:52003444-52003858:-|nuORF	ENST00000461108.5_1_3:52003444-52003858:-|nuORF	ENST00000461108.5_1_3:52003444-52003858:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.27130126953125	2	493.231645	984.448736	0.31193	0.00015385	0.9868	0.00048672	1.2987	0.00064058	493.2318985925075	75.92	0.40514	75.973	75.756	76.161	0.053413					22	14	2	0	0	0	0.25066	1	19519	19519		11.64	11.64	1	258550			4055	10743	2041	2041	5430	5430					-0.04411014668517055
CAWKKVCHWGQ	11	Unmodified	_CAWKKVCHWGQ_					0	0	0			REV__nc|ENSG00000196668|Q6ZV60|LINC00173	REV__nc|ENSG00000196668|Q6ZV60|LINC00173	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7895812988281	3	449.214599	1344.62197	-0.078989	-3.5483E-05	-1.0101	-0.00045374	-1.0891	-0.00048922	449.21419315896117	14.908	0.33591	14.908	14.676	15.012	0					19	11	3	0	0	0	0.33347	1	866	866		0.45452	0.29519	1	43023	+		4056	23150	2042	2042	5431	5431					-0.03655971883745224
CCCCCCSHVGA	11	Unmodified	_CCCCCCSHVGA_					0	0	0		nc|ENSG00000231721|A0A455ZAR2|LINC-PINT;ENST00000451786.5_1_7:130792823-130793084:-|nuORF	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	nc|ENSG00000231721|A0A455ZAR2|LINC-PINT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.6494140625	2	544.649078	1087.2836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.61	1	111.59	111.09	112.09	-0.013939								0	0	0	0.3823	1	29034	29034		0	0	1				4057	10650	2043	2043	5432	5432					-0.2565472044962007
CCCCWESSL	9	Unmodified	_CCCCWESSL_					0	0	0		ENST00000486434.1_1_6:29573344-29574170:-|nuORF;ENST00000355973.7_1_6:29572734-29574170:-|nuORF	ENST00000486434.1_1_6:29573344-29574170:-|nuORF	ENST00000486434.1_1_6:29573344-29574170:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7898559570312	2	517.165941	1032.31733	0.69458	0.00035921	-0.066348	-3.4313E-05	0.62823	0.0003249	517.1659629484518	45.697	0.60823	45.697	45.366	45.974	0					31	21	2	0	0	0	0.26145	1	10158	10158		0	0	1	168280			4058	9615	2044	2044	5433	5433					-0.19753652414578937
CCDFRPYFT	9	Unmodified	_CCDFRPYFT_					0	0	0		ENSG00000205593|ENST00000413817|DENND6B;ENST00000495607.5_1_22:50752441-50754573:-|nuORF	ENSG00000205593|ENST00000413817|DENND6B	ENSG00000205593|ENST00000413817|DENND6B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.792236328125	2	576.23607	1150.45759	0.20724	0.00011942	0.041413	2.3864E-05	0.24865	0.00014328	576.2362562716025	75.279	0.38735	75.279	75.178	75.565	0					20	13	2	0	0	0	0.25938	1	19406	19406		4.3292	4.3292	1	75498			4059	8297	2045	2045	5434	5434					-0.11162409094345094
CCDVGCDSK	9	Unmodified	_CCDVGCDSK_					0	0	0			REV__ENSG00000090889|ENST00000374403|KIF4A	REV__ENSG00000090889|ENST00000374403|KIF4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.1612854003906	2	465.161713	928.308873	-0.10037	-4.6689E-05	-1.0976	-0.00051056	-1.198	-0.00055725	465.161597037208	24.037	2.3518	24.037	23.362	25.714	0					136	80	3	0	0	0	0.2719	1	3802	3802		13.042	1.4022	1	232790	+		4060	14052	2046	2046	5435	5435					-0.15814883059545082
CCHTEIIELR	10	Unmodified	_CCHTEIIELR_					0	0	0		KRT36|p.Q306H|1|0.14|ENSG00000126337|chr17:41487420-41487420|C/A|missense_variant	KRT36|p.Q306H|1|0.14|ENSG00000126337|chr17:41487420-41487420|C/A|missense_variant	KRT36|p.Q306H|1|0.14|ENSG00000126337|chr17:41487420-41487420|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.3179321289062	2	608.794283	1215.57401	0.71125	0.00043301	2.4437	0.0014877	3.155	0.0019207	608.7960685237739	34.039	0.5585	34.105	33.786	34.344	0.06636					24	19	2	0	0	0	0.31899	1	6583	6583		8.1555	2.4237	1	135070			4061	12433	2047	2047	5436	5436					-0.025150905944656188
CCHTEIIELR	10	Unmodified	_CCHTEIIELR_					0	0	0		KRT36|p.Q306H|1|0.14|ENSG00000126337|chr17:41487420-41487420|C/A|missense_variant	KRT36|p.Q306H|1|0.14|ENSG00000126337|chr17:41487420-41487420|C/A|missense_variant	KRT36|p.Q306H|1|0.14|ENSG00000126337|chr17:41487420-41487420|C/A|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	608.794283	1215.57401	0.17806	0.0001084	2.5505	0.0015527	2.7285	0.0016611	609.2967046930781	33.981	0.33117	34.048	33.907	34.239	0.0667	-0.069059	-0.00046623	NaN	8.1555	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168820			4062	12433	2047	2047							-0.025150905944656188
CCRYKITL	8	Unmodified	_CCRYKITL_					0	0	0		ENST00000471187.1_1_1:43778861-43779798:+|nuORF	ENST00000471187.1_1_1:43778861-43779798:+|nuORF	ENST00000471187.1_1_1:43778861-43779798:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.761962890625	2	500.259348	998.504143	0.37155	0.00018587	1.0981	0.00054931	1.4696	0.00073518	500.2597622825129	67.77	0.59459	67.77	67.479	68.074	0					30	20	2	0	0	0	0.41758	1	17063	17063		16.942	1.0951	1	296110			4063	10873	2048	2048	5437	5437					0.004830755275975207
CCRYKITL	8	Unmodified	_CCRYKITL_					0	0	0		ENST00000471187.1_1_1:43778861-43779798:+|nuORF	ENST00000471187.1_1_1:43778861-43779798:+|nuORF	ENST00000471187.1_1_1:43778861-43779798:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	500.259348	998.504143	0.37155	0.00018587	1.0981	0.00054931	1.4696	0.00073518	500.2597622825129	67.77	0.59459	67.77	67.479	68.074	0	0.046409	-9.5509E-06	NaN	16.942	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296110			4064	10873	2048	2048							0.004830755275975207
CCRYKITL	8	Unmodified	_CCRYKITL_					0	0	0		ENST00000471187.1_1_1:43778861-43779798:+|nuORF	ENST00000471187.1_1_1:43778861-43779798:+|nuORF	ENST00000471187.1_1_1:43778861-43779798:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	500.259348	998.504143	0.4931	0.00024668	0.98455	0.00049253	1.4776	0.00073921	500.25953700091793	67.631	0.64999	67.709	67.434	68.084	0.078041	-0.01461	-0.00012312	NaN	16.942	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234960			4065	10873	2048	2048							0.004830755275975207
CCRYKITL	8	Unmodified	_CCRYKITL_					0	0	0		ENST00000471187.1_1_1:43778861-43779798:+|nuORF	ENST00000471187.1_1_1:43778861-43779798:+|nuORF	ENST00000471187.1_1_1:43778861-43779798:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	500.259348	998.504143	0.27699	0.00013857	1.2432	0.00062192	1.5202	0.00076048	500.2598038797322	67.708	0.62007	67.692	67.423	68.043	-0.016296	-0.031799	0.00013565	NaN	16.942	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256600			4066	10873	2048	2048							0.004830755275975207
CCSVNFSAEHF	11	Unmodified	_CCSVNFSAEHF_					0	0	0		ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.5242919921875	3	415.167203	1242.47978	0.094641	3.9292E-05	-0.2598	-0.00010786	-0.16516	-6.857E-05	415.1671408099501	46.384	0.62507	46.439	46.032	46.657	0.054371					40	22	2	0	0	0	0.33175	1	10481	10481		2.2527	0	1	266750			4067	4144	2049	2049	5438	5438					-0.1317622941658101
CDCEEGEEVF	10	Unmodified	_CDCEEGEEVF_					0	0	0			REV__nc|ENSG00000148848|O43184-3|ADAM12	REV__nc|ENSG00000148848|O43184-3|ADAM12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2847290039062	2	580.199547	1158.38454	0.24945	0.00014473	0.14826	8.6021E-05	0.39771	0.00023075	580.2000255724126	52.762	0.62999	52.761	52.521	53.151	-0.00081253					47	22	3	0	0	0	0.31847	1	12339	12339		6.7232	2.7788	1	489850	+		4068	16443	2050	2050	5439	5439					-0.18831627398276396
CDDCRNGGTCL	11	Unmodified	_CDDCRNGGTCL_					0	0	0		nc|ENSG00000162591|O75095-2|MEGF6;ENSG00000162591|ENST00000356575|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.713134765625	2	578.712633	1155.41071	0.36184	0.0002094	0.59431	0.00034394	0.95615	0.00055334	578.7130271886389	70.857	0.85678	70.832	70.407	71.264	-0.024864					125	30	6	0	0	0	0.44828	1	17974	17974		4.897	0.141	1	2548300			4069	5583	2051	2051	5440	5440					-0.1607763670776876
CDDEEALEVRL	11	Unmodified	_CDDEEALEVRL_					0	0	0			REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	646.2974243164062	2	646.295367	1290.57618	-0.072301	-4.6728E-05	3.0049	0.0019421	2.9326	0.0018953	646.2973851242924	12.357	0.1811	12.289	12.196	12.377	-0.06806					13	5	3	0	0	0	0.48353	1	121	121		0.26902	0.26902	1	35139	+		4070	18669	2052	2052	5441	5441					-0.05748383375635058
CDDEEALEVRL	11	Unmodified	_CDDEEALEVRL_					0	0	0			REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	646.295367	1290.57618	0.078466	5.0712E-05	3.0383	0.0019637	3.1168	0.0020144	646.2974927196781	12.332	0.15265	12.332	12.245	12.397	0	0.041111	0.00029889	NaN	0.26902	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29507	+		4071	18669	2052	2052							-0.05748383375635058
CDDEEALEVRL	11	Unmodified	_CDDEEALEVRL_					0	0	0			REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	646.295367	1290.57618	0.12139	7.8456E-05	2.4287	0.0015696	2.5501	0.0016481	646.2969896964206	12.348	0.14675	12.252	12.148	12.295	-0.096607	-0.039417	-0.00048915	NaN	0.26902	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34090	+		4072	18669	2052	2052							-0.05748383375635058
CDDEEALEVRL	11	Unmodified	_CDDEEALEVRL_					0	0	0			REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	REV__nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	646.295367	1290.57618	-0.072301	-4.6728E-05	3.0049	0.0019421	2.9326	0.0018953	646.2973851242924	12.357	0.1811	12.289	12.196	12.377	-0.06806	-0.0016942	0.00025569	NaN	0.26902	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35139	+		4073	18669	2052	2052							-0.05748383375635058
CDFLNWGNTF	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))DFLNWGNTF_	C(1)DFLNWGNTF		C(54)DFLNWGNTF		0	1	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.2689208984375	2	637.268955	1272.52336	0.37564	0.00023938	-0.89506	-0.0005704	-0.51943	-0.00033101	637.2684093840129	46.205	0.65884	46.264	45.951	46.61	0.059834					46	23	3	0	0	0	0.073661	1	10365	10365		53.833	29.812	1	586800	+		4074	17453	2053	2053	5442	5442	26				-0.10200296647803953
CDFLNWGNTF	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))DFLNWGNTF_					0	1	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	637.268955	1272.52336	0.10871	6.9275E-05	-0.70679	-0.00045042	-0.59809	-0.00038114	637.2684377937537	46.434	0.54309	46.434	46.246	46.789	0	0.09957	0.00023385	NaN	53.833	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	641450	+		4075	17453	2053	2053			26				-0.10200296647803953
CDFLNWGNTF	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))DFLNWGNTF_					0	1	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	637.268955	1272.52336	0.37564	0.00023938	-0.89506	-0.0005704	-0.51943	-0.00033101	637.2684093840129	46.205	0.65884	46.264	45.951	46.61	0.059834	-0.06983	-6.1113E-06	NaN	53.833	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	586800	+		4076	17453	2053	2053			26				-0.10200296647803953
CDFLNWGNTF	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))DFLNWGNTF_					0	1	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	637.268955	1272.52336	0.55416	0.00035315	-1.1059	-0.00070474	-0.55171	-0.00035159	637.2682185858442	46.239	0.49432	46.305	46.008	46.503	0.065048	-0.02974	-0.0002748	NaN	53.833	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	516560	+		4077	17453	2053	2053			26				-0.10200296647803953
CDGDSRLLS	9	Unmodified	_CDGDSRLLS_					0	0	0			REV__ENST00000323348.9_1_2:220094522-220094585:+|nuORF	REV__ENST00000323348.9_1_2:220094522-220094585:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7605285644531	2	483.221474	964.428395	0.21903	0.00010584	-2.7847	-0.0013456	-2.5656	-0.0012398	483.22135918672797	73.461	2.3103	73.461	71.582	73.893	0					118	83	2	0	0	0	0.25622	1	18821	18821		7.2892	0	1	174540	+		4078	19981	2054	2054	5443	5443					-0.05524230118965079
CDIGELNTRMT	11	Unmodified	_CDIGELNTRMT_					0	0	0		ENSG00000004846|ENST00000404938|ABCB5;ABCB5|p.H1135Ifs*17|1|0.26|ENSG00000004846|chr7:20745411-20745411|C/-|frameshift_variant	ENSG00000004846|ENST00000404938|ABCB5	ENSG00000004846|ENST00000404938|ABCB5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5907287597656	3	418.193529	1251.55876	-0.050469	-2.1106E-05	1.8528	0.00077484	1.8024	0.00075373	418.1944370401101	24.659	0.68863	24.628	24.174	24.862	-0.031408					47	23	3	0	0	0	0.33198	1	3703	3703		0.92553	0	1	102540			4079	1	2055	2055	5444	5444					-0.05696002182276061
CDNPVMKSCQK	11	Unmodified	_CDNPVMKSCQK_					0	0	0			REV__ENST00000485882.1_1_2:175676980-175711685:-|nuORF	REV__ENST00000485882.1_1_2:175676980-175711685:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2005615234375	3	418.187609	1251.541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.78	1	26.769	26.269	27.269	-0.01156								0	0	0	0.36685	1	4454	4454		2.084	0.97421	1		+		4080	15383	2056	2056	5445	5445					-0.07471040708810506
CDYLTICMS	9	Unmodified	_CDYLTICMS_					0	0	0		ENST00000380291.5_1_X:15849161-15849191:-|nuORF	ENST00000380291.5_1_X:15849161-15849191:-|nuORF	ENST00000380291.5_1_X:15849161-15849191:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.71142578125	2	524.711039	1047.40752	0.57757	0.00030306	-0.72936	-0.0003827	-0.15179	-7.9645E-05	524.7110339425906	68.837	0.80259	68.837	68.566	69.369	0					88	28	5	0	0	0	0.22188	1	17342	17342		20.454	1.1966	1	1855700			4081	9982	2057	2057	5446	5446					-0.11428279814504094
CDYLTICMS	9	Unmodified	_CDYLTICMS_					0	0	0		ENST00000380291.5_1_X:15849161-15849191:-|nuORF	ENST00000380291.5_1_X:15849161-15849191:-|nuORF	ENST00000380291.5_1_X:15849161-15849191:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7113037109375	2	524.711039	1047.40752	0.54726	0.00028715	-0.99356	-0.00052133	-0.44629	-0.00023418	524.7110247781839	68.801	0.8109	68.873	68.59	69.401	0.071938					89	29	4	0	0	0	0.22188	2	17315	17315;17409		20.454	4.6064	1	1725700			4082	9982	2057	2057	5447;5448	5447					-0.11428279814504094
CEAEEYRITSA	11	Unmodified	_CEAEEYRITSA_					0	0	0		ENSG00000233436|ENST00000422652|BTBD18	ENSG00000233436|ENST00000422652|BTBD18	ENSG00000233436|ENST00000422652|BTBD18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.5232849121094	3	424.523932	1270.54997	-0.40763	-0.00017305	-1.7587	-0.00074663	-2.1664	-0.00091968	424.52339499459515	12.363	0.30864	12.363	12.273	12.582	0					20	9	3	0	0	0	0.44523	1	108	108		2.4348	0.8425	1	77916			4083	8480	2058	2058	5449	5449					-0.07448652547122947
CECNFSGL	8	Unmodified	_CECNFSGL_					0	0	0			REV__nc|ENSG00000138829|P35556-2|FBN2	REV__nc|ENSG00000138829|P35556-2|FBN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.2472229003906	2	436.667489	871.320424	-0.76411	-0.00033366	-3.7609	-0.0016422	-4.525	-0.0019759	436.66614038023243	34.664	0.33271	34.742	34.587	34.92	0.077381					16	11	2	0	0	0	0.34092	1	6907	6907		13.508	3.3245	1	90716	+		4084	15961	2059	2059	5450	5450					-0.12038317973906487
CEHGDPNQI	9	Unmodified	_CEHGDPNQI_					0	0	0		ENST00000426714.1_1_1:66041898-66042324:-|nuORF	ENST00000426714.1_1_1:66041898-66042324:-|nuORF	ENST00000426714.1_1_1:66041898-66042324:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7114562988281	2	506.711273	1011.40799	0.13686	6.9349E-05	-0.087992	-4.4587E-05	0.048869	2.4762E-05	506.71143206027784	69.457	1.234	69.457	69.067	70.301	0					179	44	7	0	0	0	0.25989	2	17599	17557;17599		14.838	5.4551	1	5471200			4085	10422	2060	2060	5451;5452	5452					-0.09725400778791027
CEHGDPNQI	9	Unmodified	_CEHGDPNQI_					0	0	0		ENST00000426714.1_1_1:66041898-66042324:-|nuORF	ENST00000426714.1_1_1:66041898-66042324:-|nuORF	ENST00000426714.1_1_1:66041898-66042324:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.212890625	2	506.711273	1011.40799	0.19262	9.7602E-05	-0.1083	-5.4878E-05	0.084317	4.2724E-05	506.7114133544081	69.43	1.2383	69.496	69.066	70.304	0.066048					176	43	7	0	0	0	0.28674	2	17536	17536;17578		10.824	1.4408	1	5428500			4086	10422	2060	2060	5453;5454	5453					-0.09725400778791027
CEHGDPNQI	9	Unmodified	_CEHGDPNQI_					0	0	0		ENST00000426714.1_1_1:66041898-66042324:-|nuORF	ENST00000426714.1_1_1:66041898-66042324:-|nuORF	ENST00000426714.1_1_1:66041898-66042324:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7114562988281	2	506.711273	1011.40799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.637	1	69.615	69.115	70.115	-0.022087								0	0	0	0.22377	1	17595	17595		14.838	0	1				4087	10422	2060	2060	5455	5455					-0.09725400778791027
CEHGDPNQI	9	Unmodified	_CEHGDPNQI_					0	0	0		ENST00000426714.1_1_1:66041898-66042324:-|nuORF	ENST00000426714.1_1_1:66041898-66042324:-|nuORF	ENST00000426714.1_1_1:66041898-66042324:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	506.711273	1011.40799	0.19262	9.7602E-05	-0.1083	-5.4878E-05	0.084317	4.2724E-05	506.7114133544081	69.43	1.2383	69.496	69.066	70.304	0.066048	0.019885	-9.7873E-06	NaN	14.838	176	43	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5428500			4088	10422	2060	2060							-0.09725400778791027
CELDIIFNF	9	Unmodified	_CELDIIFNF_					0	0	0		ENSG00000106367|ENST00000337619|AP1S1;ENST00000396653.2_1_2:224629896-224642420:-|nuORF;nc|ENSG00000106367|P61966-2|AP1S1;nc|ENSG00000152056|Q96PC3|AP1S3;ENSG00000152056|ENST00000396654|AP1S3;nc|ENSG00000182287|P56377|AP1S2;ENSG00000182287|ENST00000672987|AP1S2;nc|ENSG00000152056|Q96PC3-2|AP1S3;nc|ENSG00000182287|P56377-2|AP1S2	ENSG00000106367|ENST00000337619|AP1S1	ENSG00000106367|ENST00000337619|AP1S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.274658203125	2	557.267893	1112.52123	0.6584	0.00036691	0.51229	0.00028548	1.1707	0.00065239	557.2678685018848	77.982	2.7059	78.041	77.316	80.022	0.058151					245	105	5	0	0	0	0.27532	1	20296	20296		12.532	1.7076	1	1692400			4089	2077	2061	2061	5456	5456					-0.03052725385600752
CERKKKEKEKE	11	Unmodified	_CERKKKEKEKE_					0	0	0		ENST00000529615.1_1_11:27359677-27371953:-|nuORF;ENSG00000109881|ENST00000328697|CCDC34	ENST00000529615.1_1_11:27359677-27371953:-|nuORF	ENST00000529615.1_1_11:27359677-27371953:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.3091735839844	3	478.929292	1433.76605	0.42292	0.00020255	0.1261	6.0395E-05	0.54902	0.00026294	479.26348695761016	38.878	0.9672	38.977	38.544	39.511	0.099403					78	34	3	0	0	0	0.33321	1	8031	8031		1.9275	1.9275	1	1420800			4090	2277	2062	2062	5457	5457					0.06651528357360803
CFACAHPKE	9	Unmodified	_CFACAHPKE_					0	0	0			REV__ZNF236|p.A950Hfs*33|1|0.2|ENSG00000130856|chr18:76912291-76912291|G/-|frameshift_variant	REV__ZNF236|p.A950Hfs*33|1|0.2|ENSG00000130856|chr18:76912291-76912291|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.2771911621094	2	503.21768	1004.42081	0.2503	0.00012595	0.72038	0.00036251	0.97067	0.00048846	503.21802946855934	24.181	0.72194	24.181	23.917	24.639	0					39	24	2	0	0	0	0.26168	1	3609	3609		1.8442	1.0506	1	95543	+		4091	15487	2063	2063	5458	5458					-0.08122660920253111
CFACAHPKE	9	Unmodified	_CFACAHPKE_					0	0	0			REV__ZNF236|p.A950Hfs*33|1|0.2|ENSG00000130856|chr18:76912291-76912291|G/-|frameshift_variant	REV__ZNF236|p.A950Hfs*33|1|0.2|ENSG00000130856|chr18:76912291-76912291|G/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	503.21768	1004.42081	0.23888	0.00012021	0.34947	0.00017586	0.58835	0.00029607	503.2178793831741	24.323	0.76461	24.284	23.909	24.674	-0.038927	0.02556	-0.00022169	NaN	1.8442	40	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85225	+		4092	15487	2063	2063							-0.08122660920253111
CFCEGPRR	8	Unmodified	_CFCEGPRR_					0	0	0		ENST00000592775.5_1_6:146136435-146192101:+|nuORF;ENST00000587540.1_1_6:146136435-146202753:+|nuORF;ENST00000591489.5_1_6:146136435-146202753:+|nuORF;ENST00000587426.5_1_6:146136435-146175755:+|nuORF;ENST00000452617.5_2_6:146136435-146202753:+|nuORF	ENST00000592775.5_1_6:146136435-146192101:+|nuORF	ENST00000592775.5_1_6:146136435-146192101:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7593688964844	2	484.215472	966.41639	-0.10116	-4.8983E-05	-0.049486	-2.3962E-05	-0.15065	-7.2945E-05	484.21538179754884	13.518	0.32805	13.451	13.302	13.63	-0.067496					14	11	2	0	0	0	0.344	1	425	425		2.5775	1.7838	1	16513			4093	10661	2064	2064	5459	5459					-0.06816125343152635
CFFSPSHCSN	10	Unmodified	_CFFSPSHCSN_					0	0	0			REV__ENST00000558362.5_1_15:45669788-45670166:-|nuORF	REV__ENST00000558362.5_1_15:45669788-45670166:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.7157592773438	2	564.715501	1127.41645	0.35248	0.00019905	0.60035	0.00033903	0.95283	0.00053808	564.7157665050963	72.32	0.67719	72.32	71.989	72.667	0					71	24	4	0	0	0	0.39935	1	18489	18489		3.5965	0.31518	1	352390	+		4094	22281	2065	2065	5460	5460					-0.14216170133818196
CFFSPSHCSN	10	Unmodified	_CFFSPSHCSN_					0	0	0			REV__ENST00000558362.5_1_15:45669788-45670166:-|nuORF	REV__ENST00000558362.5_1_15:45669788-45670166:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.715501	1127.41645	0.54779	0.00030934	0.41108	0.00023214	0.95887	0.00054149	564.7157400732546	72.237	0.67875	72.293	72.005	72.684	0.056572	-0.004494	-0.00012177	NaN	3.5965	71	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334930	+		4095	22281	2065	2065							-0.14216170133818196
CFGEFTKMKI	10	Unmodified	_CFGEFTKMKI_					0	0	0			REV__ENSG00000115239|ENST00000263634|ASB3	REV__ENSG00000115239|ENST00000263634|ASB3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.2984008789062	2	602.29867	1202.58279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.64	1	82.713	82.213	83.213	0.073097								0	0	0	0.37044	1	21573	21573		6.2058	0.47393	1		+		4096	14868	2066	2066	5461	5461					-0.010401169579608904
CFGPKKVKP	9	Unmodified	_CFGPKKVKP_					0	0	0		ENSG00000112759|ENST00000371755|SLC29A1;nc|ENSG00000112759|Q99808-2|SLC29A1	ENSG00000112759|ENST00000371755|SLC29A1	ENSG00000112759|ENST00000371755|SLC29A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2936096191406	2	502.291505	1002.56846	0.16254	8.1641E-05	1.9243	0.00096654	2.0868	0.0010482	502.2928041001699	22.579	0.51435	22.579	22.36	22.875	0					27	17	2	0	0	0	0.25988	1	3204	3204		3.9444	0.66309	1	73367			4097	2459	2067	2067	5462	5462					0.06727598676047819
CFGPKKVKP	9	Unmodified	_CFGPKKVKP_					0	0	0		ENSG00000112759|ENST00000371755|SLC29A1;nc|ENSG00000112759|Q99808-2|SLC29A1	ENSG00000112759|ENST00000371755|SLC29A1	ENSG00000112759|ENST00000371755|SLC29A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	502.291505	1002.56846	0.15912	7.9924E-05	2.6518	0.001332	2.8109	0.0014119	502.29272897072013	22.653	0.51848	22.566	22.272	22.79	-0.08761	-0.023109	0.00031775	NaN	3.9444	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58687			4098	2459	2067	2067							0.06727598676047819
CFGPKKVKP	9	Unmodified	_CFGPKKVKP_					0	0	0		ENSG00000112759|ENST00000371755|SLC29A1;nc|ENSG00000112759|Q99808-2|SLC29A1	ENSG00000112759|ENST00000371755|SLC29A1	ENSG00000112759|ENST00000371755|SLC29A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	502.291505	1002.56846	0.15738	7.9048E-05	2.1579	0.0010839	2.3153	0.0011629	502.29273531690393	22.666	0.60715	22.621	22.266	22.873	-0.044865	0.0325	-0.00017843	NaN	3.9444	32	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69714			4099	2459	2067	2067							0.06727598676047819
CFILILPTV	9	Unmodified	_CFILILPTV_					0	0	0			REV__ENSG00000198925|ENST00000361242|ATG9A	REV__ENSG00000198925|ENST00000361242|ATG9A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.80389404296875	2	509.803914	1017.59328	0.36866	0.00018795	-0.12705	-6.4768E-05	0.24162	0.00012318	509.803738168651	74.265	2.9138	74.235	72.454	75.367	-0.030655					196	105	3	0	0	0	0.30623	1	18917	18917		7.9102	7.9102	1	2074000	+		4100	18893	2068	2068	5463	5463					0.08518233758775295
CFIYIRELWG	10	Unmodified	_CFIYIRELWG_					0	0	0			REV__ENST00000532959.5_1_11:86749009-87006862:+|nuORF	REV__ENST00000532959.5_1_11:86749009-87006862:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.2547912597656	3	433.889998	1298.64816	-0.15188	-6.5899E-05	0.1322	5.7361E-05	-0.019679	-8.5385E-06	434.2251123163529	96.277	0.036018	96.355	96.332	96.368	0.077408					5	3	2	0	0	0	0.32162	1	25731	25731		0.77653	0	1	43867	+		4101	22038	2069	2069	5464	5464					0.010786205594058629
CFKGSSHL	8	Unmodified	_CFKGSSHL_					0	0	0		ENST00000261226.8_1_12:94964130-94964496:-|nuORF	ENST00000261226.8_1_12:94964130-94964496:-|nuORF	ENST00000261226.8_1_12:94964130-94964496:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.7131042480469	2	439.713088	877.411622	0.091115	4.0064E-05	0.21373	9.3978E-05	0.30484	0.00013404	439.71314303099706	66.91	0.73786	66.91	66.6	67.338	0					42	25	2	0	0	0	0.44569	1	16818	16818		7.2892	2.0586	1	374730			4102	8961	2070	2070	5465	5465					-0.0319868621426167
CFLKFKSF	8	Unmodified	_CFLKFKSF_					0	0	0		nc|ENSG00000005189|Q96IC2-2|REXO5;ENSG00000005189|ENST00000261377|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.63433837890625	2	510.272781	1018.53101	0.2052	0.00010471	0.66028	0.00033692	0.86548	0.00044163	510.27287751610976	93.521	0.77953	93.521	93.224	94.003	0					87	65	2	0	0	0	0.34319	1	25055	25055		5.7604	3.9162	1	97000			4103	328	2071	2071	5466	5466					0.022485074104451996
CFLKFKSF	8	Unmodified	_CFLKFKSF_					0	0	0		nc|ENSG00000005189|Q96IC2-2|REXO5;ENSG00000005189|ENST00000261377|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	510.272781	1018.53101	0.38228	0.00019507	-1.0585	-0.0005401	-0.67617	-0.00034503	510.272352387718	93.429	0.19543	93.428	93.317	93.513	-0.00050354	-0.0464	-0.0013225	NaN	5.7604	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102270			4104	328	2071	2071							0.022485074104451996
CFLMWLTV	8	Unmodified	_CFLMWLTV_					0	0	0			REV__F2RL2|p.F121C|1|0.36|ENSG00000164220|chr5:76618345-76618345|A/C|missense_variant	REV__F2RL2|p.F121C|1|0.36|ENSG00000164220|chr5:76618345-76618345|A/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7527770996094	2	506.753367	1011.49218	0.2929	0.00014843	0.36624	0.00018559	0.65914	0.00033402	506.7534430295958	70.936	0.46634	70.997	70.744	71.21	0.060783					35	16	3	0	0	0	0.33916	1	18039	18039		26.341	2.3207	1	405980	+		4105	22683	2072	2072	5467	5467					-0.013105412156050988
CFLYSWWLA	9	Unmodified	_CFLYSWWLA_					0	0	0		nc|ENSG00000197891|Q96S37-3|SLC22A12;nc|ENSG00000197891|Q96S37-4|SLC22A12;ENSG00000197891|ENST00000377574|SLC22A12	nc|ENSG00000197891|Q96S37-3|SLC22A12	nc|ENSG00000197891|Q96S37-3|SLC22A12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.3523559570312	2	594.78097	1187.54739	0.3549	0.00021109	1.6489	0.00098076	2.0039	0.0011919	594.7819171771421	49.685	0.33909	49.706	49.537	49.876	0.020691					23	12	2	0	0	0	0.25066	1	11452	11452		11.64	0.81637	1	206360			4106	8010	2073	2073	5468	5468					-0.0388841142344063
CFQGFNQFK	9	Unmodified	_CFQGFNQFK_					0	0	0			REV__nc|ENSG00000138336|Q8NFU7-2|TET1	REV__nc|ENSG00000138336|Q8NFU7-2|TET1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2921752929688	2	559.758027	1117.5015	0.16346	9.15E-05	0.4161	0.00023291	0.57956	0.00032441	559.7582361212322	61.096	0.81264	61.193	60.978	61.79	0.096989					82	29	4	0	0	0	0.2451	1	15001	15001		15.847	5.0233	1	4002200	+		4107	15918	2074	2074	5469	5469					-0.05255056605710706
CFQGFNQFK	9	Unmodified	_CFQGFNQFK_					0	0	0			REV__nc|ENSG00000138336|Q8NFU7-2|TET1	REV__nc|ENSG00000138336|Q8NFU7-2|TET1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	559.758027	1117.5015	0.14074	7.8778E-05	0.49684	0.00027811	0.63758	0.00035689	559.7582643269347	61.204	0.79226	61.204	60.992	61.784	0	0.013871	-1.0443E-05	NaN	15.847	85	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3574100	+		4108	15918	2074	2074							-0.05255056605710706
CFQGFNQFK	9	Unmodified	_CFQGFNQFK_					0	0	0			REV__nc|ENSG00000138336|Q8NFU7-2|TET1	REV__nc|ENSG00000138336|Q8NFU7-2|TET1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	559.758027	1117.5015	0.11539	6.4591E-05	0.60211	0.00033703	0.7175	0.00040163	559.7583446108243	61.184	0.75918	61.174	60.968	61.727	-0.0094528	-0.016272	0.00010741	NaN	15.847	77	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4743800	+		4109	15918	2074	2074							-0.05255056605710706
CFRNKFYNI	9	Unmodified	_CFRNKFYNI_					0	0	0			REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.797607421875	2	602.800226	1203.5859	0.21682	0.0001307	0.51201	0.00030864	0.72883	0.00043934	602.8008045769662	67.146	1.1761	67.13	66.814	67.991	-0.016296					71	40	2	0	0	0	0.19747	1	17064	17064		24.021	4.6586	1	421720	+		4110	20062	2075	2075	5470	5470					-0.007751057889208823
CFRNKFYNI	9	Unmodified	_CFRNKFYNI_					0	0	0			REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.7858276367188	2	602.800226	1203.5859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.371	1	68.352	67.852	68.852	-0.019157								0	0	0	0.21353	1	17208	17208		18.146	0	1		+		4111	20062	2075	2075	5471	5471					-0.007751057889208823
CFRNKFYNI	9	Unmodified	_CFRNKFYNI_					0	0	0			REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.7991943359375	2	602.800226	1203.5859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.386	1	80.359	79.859	80.859	-0.026825								0	0	0	0.23852	1	20874	20874		10.074	2.465	1		+		4112	20062	2075	2075	5472	5472					-0.007751057889208823
CFRNKFYNI	9	Unmodified	_CFRNKFYNI_					0	0	0			REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	REV__ENST00000334512.9_1_10:81074272-81074494:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8008422851562	2	602.800226	1203.5859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.748	1	82.727	82.227	83.227	-0.020584								0	0	0	0.2489	1	21600	21600		6.7232	0.51738	1		+		4113	20062	2075	2075	5473	5473					-0.007751057889208823
CFSLQLNL	8	Unmodified	_CFSLQLNL_					0	0	0		ENST00000512507.5_1_5:134670668-134688768:-|nuORF	ENST00000512507.5_1_5:134670668-134688768:-|nuORF	ENST00000512507.5_1_5:134670668-134688768:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.24322509765625	2	469.244221	936.473888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.883	1	84.87	84.37	85.37	-0.01284								0	0	0	0.36961	1	22258	22258		5.7604	0.52976	1				4114	11396	2076	2076	5474	5474					0.0031104013405638398
CFSLQLNL	8	Unmodified	_CFSLQLNL_					0	0	0		ENST00000512507.5_1_5:134670668-134688768:-|nuORF	ENST00000512507.5_1_5:134670668-134688768:-|nuORF	ENST00000512507.5_1_5:134670668-134688768:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.24285888671875	2	469.244221	936.473888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.193	1	86.184	85.684	86.684	-0.0090027								0	0	0	0.36961	1	22658	22658		5.7604	0.52976	1				4115	11396	2076	2076	5475	5475					0.0031104013405638398
CFSVNRIA	8	Unmodified	_CFSVNRIA_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2264709472656	2	455.234187	908.453822	0.44254	0.00020146	0.65077	0.00029625	1.0933	0.00049771	455.23458082990055	78.669	0.39253	78.669	78.486	78.879	0					23	14	2	0	0	0	0.45015	1	20360	20360		5.7604	2.8712	1	59555	+		4116	16655	2077	2077	5476	5476					-0.0040671080588481345
CFSVNRIA	8	Unmodified	_CFSVNRIA_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2772216796875	2	455.234187	908.453822	0.44254	0.00020146	0.65077	0.00029625	1.0933	0.00049771	455.23458082990055	78.669	0.39253	78.669	78.486	78.879	0					23	14	2	0	0	0	0.34319	1	20334	20334		5.7604	3.1829	1	59555	+		4117	16655	2077	2077	5477	5477					-0.0040671080588481345
CFSVNRIA	8	Unmodified	_CFSVNRIA_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.22650146484375	2	455.234187	908.453822	0.40369	0.00018377	1.0968	0.00049932	1.5005	0.00068309	455.23485184121586	78.611	0.31411	78.669	78.528	78.842	0.058151					20	11	2	0	0	0	0.45015	1	20374	20374		5.7604	0.52976	1	62568	+		4118	16655	2077	2077	5478	5478					-0.0040671080588481345
CFVCPLLL	8	Unmodified	_CFVCPLLL_					0	0	0		ENST00000374721.7_1_10:35500449-35500728:+|nuORF	ENST00000374721.7_1_10:35500449-35500728:+|nuORF	ENST00000374721.7_1_10:35500449-35500728:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.7166442871094	2	454.242635	906.470717	0.162	7.3589E-05	-1.6339	-0.00074218	-1.4719	-0.00066859	454.2419537991287	80.438	0.50466	80.411	80.173	80.678	-0.026825					27	17	2	0	0	0	0.31651	1	20946	20946		17.087	5.9721	1	205920			4119	9898	2078	2078	5479	5479					0.01374073755698646
CFVSGRKN	8	Unmodified	_CFVSGRKN_					0	0	0		ENST00000566733.2_1_6:3909509-3909881:-|nuORF	ENST00000566733.2_1_6:3909509-3909881:-|nuORF	ENST00000566733.2_1_6:3909509-3909881:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2162780761719	2	455.731812	909.449071	0.2992	0.00013636	-3.462	-0.0015778	-3.1628	-0.0014414	455.73088528450904	82.939	0.48007	83.012	82.844	83.324	0.073097					30	17	2	0	0	0	0.34319	1	21633	21633		5.7604	5.7604	1	113500			4120	11987	2079	2079	5480	5480					-0.009275949486550417
CGAGFGHFEWL	11	Unmodified	_CGAGFGHFEWL_					0	0	0		nc|ENSG00000127054|Q5TA45-5|INTS11	nc|ENSG00000127054|Q5TA45-5|INTS11	nc|ENSG00000127054|Q5TA45-5|INTS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.2688598632812	2	612.268758	1222.52296	0.35976	0.00022027	0.33823	0.00020709	0.69799	0.00042736	612.2689026213345	74.182	2.1503	74.182	73.441	75.592	0					238	75	4	0	0	0	0.46277	1	19314	19314		2.9952	2.9952	1	2246800			4121	12690	2080	2080	5481	5481					-0.07939671576991714
CGAGFGHFEWL	11	Unmodified	_CGAGFGHFEWL_					0	0	0		nc|ENSG00000127054|Q5TA45-5|INTS11	nc|ENSG00000127054|Q5TA45-5|INTS11	nc|ENSG00000127054|Q5TA45-5|INTS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.26953125	2	612.268758	1222.52296	0.32157	0.00019689	0.2867	0.00017554	0.60827	0.00037242	612.2689073522866	74.189	2.1649	74.159	73.424	75.589	-0.030655					266	78	5	0	0	0	0.44523	1	19263	19263		5.2969	5.2969	1	2716800			4122	12690	2080	2080	5482	5482					-0.07939671576991714
CGCFSHSRY	9	Unmodified	_CGCFSHSRY_					0	0	0		nc|ENSG00000104970|Q9H7L2|KIR3DX1	nc|ENSG00000104970|Q9H7L2|KIR3DX1	nc|ENSG00000104970|Q9H7L2|KIR3DX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2108154296875	2	530.210386	1058.40622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.588	1	28.588	28.088	29.088	0								0	0	0	0.23852	1	5006	5006		10.074	4.3421	1				4123	12632	2081	2081	5483	5483					-0.12064733068382338
CGCFSHSRY	9	Unmodified	_CGCFSHSRY_					0	0	0		nc|ENSG00000104970|Q9H7L2|KIR3DX1	nc|ENSG00000104970|Q9H7L2|KIR3DX1	nc|ENSG00000104970|Q9H7L2|KIR3DX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2108154296875	2	530.210386	1058.40622	0.23393	0.00012403	0.57119	0.00030285	0.80512	0.00042688	530.2105647481411	28.605	0.6743	28.6	28.167	28.841	-0.0042572					40	23	2	0	0	0	0.31417	1	5042	5042		6.7232	3.1267	1	236430			4124	12632	2081	2081	5484	5484					-0.12064733068382338
CGKKTKKI	8	Unmodified	_CGKKTKKI_					0	0	0			REV__nc|ENSG00000129071|O95243-3|MBD4	REV__nc|ENSG00000129071|O95243-3|MBD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.270751953125	2	453.28368	904.552807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.157	1	75.157	74.657	75.657	0								0	0	0	0.37664	1	19296	19296		2.5775	0	1		+		4125	15398	2082	2082	5485	5485					0.09671312159025547
CHCPEGTF	8	Unmodified	_CHCPEGTF_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.1817626953125	2	447.167656	892.320759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.487	1	46.54	46.04	47.04	0.052574								0	0	0	0.36961	1	10477	10477		5.7604	1.4312	1				4126	12900	2083	2083	5486	5486					-0.12970898254047825
CHECFTPKLY	10	Unmodified	_CHECFTPKLY_					0	0	0			REV__nc|ENSG00000152689|Q8IV61-2|RASGRP3	REV__nc|ENSG00000152689|Q8IV61-2|RASGRP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.7760620117188	2	620.778102	1239.54165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.38	1	112.4	111.9	112.9	0.0131								0	0	0	0.38166	1	29251	29251		1.4819	0.8804	1		+		4127	16592	2084	2084	5487	5487					-0.06853877997446034
CHIPFIYF	8	Unmodified	_CHIPFIYF_					0	0	0			REV__ENST00000312465.11_1_4:81208372-81208576:+|nuORF	REV__ENST00000312465.11_1_4:81208372-81208576:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.771484375	2	520.257131	1038.49971	0.41373	0.00021525	0.99114	0.00051565	1.4049	0.0007309	520.2582053427723	62.192	1.8788	62.192	61.623	63.502	0					106	69	2	0	0	0	0.31651	1	15359	15359		24.21	2.4633	1	1039700	+		4128	19909	2085	2085	5488	5488					-0.018000656236608847
CHKIRKQHK	9	Unmodified	_CHKIRKQHK_					0	0	0		ENSG00000214029|ENST00000537226|ZNF891	ENSG00000214029|ENST00000537226|ZNF891	ENSG00000214029|ENST00000537226|ZNF891	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3425903320312	2	589.340384	1176.66621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.19	1	115.2	114.7	115.7	0.018738								0	0	0	0.26704	1	29930	29930		0.6015	0.076735	1				4129	8374	2086	2086	5489	5489					0.0849480032475185
CHQGRVWA	8	Unmodified	_CHQGRVWA_					0	0	0			REV__ENST00000524189.5_1_8:28925998-28926520:-|nuORF	REV__ENST00000524189.5_1_8:28925998-28926520:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7800598144531	2	478.729603	955.444654	-0.046187	-2.2111E-05	-1.8706	-0.00089552	-1.9168	-0.00091763	478.7287661974627	15.731	0.39091	15.731	15.528	15.918	0					17	13	2	0	0	0	0.34408	1	1055	1055		2.3027	0.24298	1	17579	+		4130	21936	2087	2087	5490	5490					-0.034850593715759715
CHQGRVWA	8	Unmodified	_CHQGRVWA_					0	0	0			REV__ENST00000524189.5_1_8:28925998-28926520:-|nuORF	REV__ENST00000524189.5_1_8:28925998-28926520:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	478.729603	955.444654	0.038922	1.8633E-05	-1.1603	-0.00055548	-1.1214	-0.00053684	478.72925193945656	15.876	0.43465	15.766	15.464	15.899	-0.10981	0.017374	0.00038911	NaN	2.3027	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23015	+		4131	21936	2087	2087							-0.034850593715759715
CHYGDEQD	8	Unmodified	_CHYGDEQD_					0	0	0			REV__ENSG00000128917|ENST00000249749|DLL4	REV__ENSG00000128917|ENST00000249749|DLL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.66864013671875	2	483.666531	965.31851	0.40725	0.00019697	1.8989	0.00091842	2.3061	0.0011154	483.668136786689	21.335	1.0436	21.228	20.866	21.91	-0.10781					102	36	4	0	0	0	0.46461	1	2912	2912		0.79363	0	1	550180	+		4132	15393	2088	2088	5491	5491					-0.1655365545815357
CIDILLELLQ	10	Unmodified	_CIDILLELLQ_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8348388671875	2	586.8334	1171.65225	0.52424	0.00030764	2.147	0.0012599	2.6713	0.0015676	586.8341846329681	84.569	0.49086	84.65	84.422	84.912	0.080887					22	18	2	0	0	0	0.39745	1	22193	22193		3.9444	0.3479	1	202160			4133	837	2089	2089	5492	5492					0.07328665262434697
CIFIFLYL	8	Unmodified	_CIFIFLYL_					0	0	0		nc|ENSG00000124091|Q6ZNI0|GCNT7	nc|ENSG00000124091|Q6ZNI0|GCNT7	nc|ENSG00000124091|Q6ZNI0|GCNT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2852783203125	2	516.285357	1030.55616	0.058144	3.0019E-05	-0.35427	-0.0001829	-0.29612	-0.00015288	516.2850969082814	27.761	0.77276	27.761	27.408	28.181	0					60	26	3	0	0	0	0.43455	1	4832	4832		11.114	2.3691	1	624470			4134	12683	2090	2090	5493	5493					0.04210562213006597
CIFIFLYL	8	Unmodified	_CIFIFLYL_					0	0	0		nc|ENSG00000124091|Q6ZNI0|GCNT7	nc|ENSG00000124091|Q6ZNI0|GCNT7	nc|ENSG00000124091|Q6ZNI0|GCNT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.28466796875	2	516.285357	1030.55616	-0.061623	-3.1815E-05	-0.22373	-0.00011551	-0.28535	-0.00014732	516.2851410131302	27.732	0.65782	27.711	27.437	28.095	-0.021412					52	22	3	0	0	0	0.43455	1	4842	4842		11.114	1.7313	1	686550			4135	12683	2090	2090	5494	5494					0.04210562213006597
CIFLWFCIV	9	Unmodified	_CIFLWFCIV_					0	0	0		ENST00000484040.1_1_2:213872086-213878776:-|nuORF	ENST00000484040.1_1_2:213872086-213878776:-|nuORF	ENST00000484040.1_1_2:213872086-213878776:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2899169921875	2	572.290117	1142.56568	0.38849	0.00022233	-1.2849	-0.00073536	-0.89645	-0.00051303	572.2894610253171	82.751	1.3551	82.731	82.302	83.657	-0.020584					110	54	3	0	0	0	0.2616	1	21547	21547		14.582	0.67564	1	348850			4136	11069	2091	2091	5495	5495					0.00010007226887864817
CIITLPVLF	9	Unmodified	_CIITLPVLF_					0	0	0			REV__nc|ENSG00000180616|P30874-2|SSTR2	REV__nc|ENSG00000180616|P30874-2|SSTR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8855895996094	2	509.803914	1017.59328	0.22735	0.0001159	-0.85226	-0.00043449	-0.62491	-0.00031858	509.80338438141894	93.034	0.58577	93.034	92.804	93.39	0					74	49	2	0	0	0	0.25526	1	24733	24733		7.9102	2.6795	1	61482	+		4137	18114	2092	2092	5496	5496					0.08518233758775295
CILALSQHKII	11	Unmodified	_CILALSQHKII_					0	0	0		ENST00000429248.1_1_7:56706781-56707144:-|nuORF	ENST00000429248.1_1_7:56706781-56707144:-|nuORF	ENST00000429248.1_1_7:56706781-56707144:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8687133789062	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.843	1	99.882	99.382	100.38	0.038994								0	0	0	0.37252	1	26695	26695		3.2813	1.2216	1				4138	10448	2093	2093	5497	5497					0.11231169001871422
CILALSQHKII	11	Unmodified	_CILALSQHKII_					0	0	0		ENST00000429248.1_1_7:56706781-56707144:-|nuORF	ENST00000429248.1_1_7:56706781-56707144:-|nuORF	ENST00000429248.1_1_7:56706781-56707144:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8690185546875	2	619.868108	1237.72166	0.15071	9.3423E-05	1.6941	0.0010501	1.8448	0.0011436	619.8691523294976	99.566	0.53395	99.559	99.358	99.892	-0.006897					120	68	2	0	0	0	0.46059	1	26737	26737		3.2813	0.54611	1	135490			4139	10448	2093	2093	5498	5498					0.11231169001871422
CILALSQHKII	11	Unmodified	_CILALSQHKII_					0	0	0		ENST00000429248.1_1_7:56706781-56707144:-|nuORF	ENST00000429248.1_1_7:56706781-56707144:-|nuORF	ENST00000429248.1_1_7:56706781-56707144:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8682250976562	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.922	1	99.915	99.415	100.42	-0.006897								0	0	0	0.37252	1	26750	26750		3.2813	1.6287	1				4140	10448	2093	2093	5499	5499					0.11231169001871422
CILALSQHKII	11	Unmodified	_CILALSQHKII_					0	0	0		ENST00000429248.1_1_7:56706781-56707144:-|nuORF	ENST00000429248.1_1_7:56706781-56707144:-|nuORF	ENST00000429248.1_1_7:56706781-56707144:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.869384765625	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.06	1	100.05	99.553	100.55	-0.006897								0	0	0	0.35922	1	26782	26782		6.2058	3.7073	1				4141	10448	2093	2093	5500	5500					0.11231169001871422
CILALSQHKII	11	Unmodified	_CILALSQHKII_					0	0	0		ENST00000429248.1_1_7:56706781-56707144:-|nuORF	ENST00000429248.1_1_7:56706781-56707144:-|nuORF	ENST00000429248.1_1_7:56706781-56707144:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8694458007812	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.45	1	101.44	100.94	101.94	-0.0054703								0	0	0	0.37252	1	27080	27080		3.2813	0	1				4142	10448	2093	2093	5501	5501					0.11231169001871422
CILALSQHKII	11	Unmodified	_CILALSQHKII_					0	0	0		ENST00000429248.1_1_7:56706781-56707144:-|nuORF	ENST00000429248.1_1_7:56706781-56707144:-|nuORF	ENST00000429248.1_1_7:56706781-56707144:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8697509765625	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.7	1	102.7	102.2	103.2	-0.0033646								0	0	0	0.37252	1	27341	27341		3.2813	0	1				4143	10448	2093	2093	5502	5502					0.11231169001871422
CILALSQHKII	11	Unmodified	_CILALSQHKII_					0	0	0		ENST00000429248.1_1_7:56706781-56707144:-|nuORF	ENST00000429248.1_1_7:56706781-56707144:-|nuORF	ENST00000429248.1_1_7:56706781-56707144:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8685302734375	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.71	1	102.71	102.21	103.21	-0.0033646								0	0	0	0.37252	1	27344	27344		3.2813	0.78282	1				4144	10448	2093	2093	5503	5503					0.11231169001871422
CIPVRLPP	8	Unmodified	_CIPVRLPP_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.7652893066406	2	447.765123	893.515694	0.21449	9.6042E-05	0.60148	0.00026932	0.81597	0.00036536	447.7653067114119	80.528	0.87998	80.528	80.267	81.147	0					87	39	3	0	0	0	0.45015	1	20946	20946		5.7604	2.8712	1	1205900	+		4145	15806	2094	2094	5504	5504					0.06467640613254844
CIPVRLPP	8	Unmodified	_CIPVRLPP_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.7651062011719	2	447.765123	893.515694	0.25298	0.00011327	0.36914	0.00016529	0.62212	0.00027856	447.7652088302972	80.597	0.99828	80.57	80.204	81.202	-0.026817					76	38	3	0	0	0	0.45942	1	20936	20936		2.5775	0	1	1286100	+		4146	15806	2094	2094	5505	5505					0.06467640613254844
CIPVRLPP	8	Unmodified	_CIPVRLPP_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	447.765123	893.515694	0.037033	1.6582E-05	1.0262	0.0004595	1.0632	0.00047608	447.7655087844598	80.47	1.0201	80.535	80.241	81.261	0.065094	-0.0093625	0.0001761	NaN	5.7604	82	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1145900	+		4147	15806	2094	2094							0.06467640613254844
CIRQLKFFT	9	Unmodified	_CIRQLKFFT_					0	0	0		ENSG00000164509|ENST00000652347|IL31RA;nc|ENSG00000164509|Q8NI17-4|IL31RA;nc|ENSG00000164509|Q8NI17-8|IL31RA;nc|ENSG00000164509|Q8NI17-5|IL31RA	ENSG00000164509|ENST00000652347|IL31RA	ENSG00000164509|ENST00000652347|IL31RA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3221435546875	2	578.320794	1154.62703	0.38905	0.00022499	0.25585	0.00014796	0.6449	0.00037296	578.320734328455	82.219	2.6522	82.219	81.302	83.954	0					240	103	3	0	0	0	0.28674	1	21966	21966		10.824	5.9269	1	835630			4148	5851	2095	2095	5506	5506					0.055906552505121
CIRQLKFFT	9	Unmodified	_CIRQLKFFT_					0	0	0		ENSG00000164509|ENST00000652347|IL31RA;nc|ENSG00000164509|Q8NI17-4|IL31RA;nc|ENSG00000164509|Q8NI17-8|IL31RA;nc|ENSG00000164509|Q8NI17-5|IL31RA	ENSG00000164509|ENST00000652347|IL31RA	ENSG00000164509|ENST00000652347|IL31RA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3217163085938	2	578.320794	1154.62703	0.38603	0.00022325	0.33455	0.00019348	0.72057	0.00041672	578.3207795532456	82.408	2.4147	82.387	81.478	83.892	-0.020584					239	99	3	0	0	0	0.30623	1	21929	21929		7.9102	7.9102	1	1098200			4149	5851	2095	2095	5507	5507					0.055906552505121
CIRVFSYTF	9	Unmodified	_CIRVFSYTF_					0	0	0		ENST00000545740.1_13:111291609-111292115:+|nuORF	ENST00000545740.1_13:111291609-111292115:+|nuORF	ENST00000545740.1_13:111291609-111292115:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.846923828125	2	568.283877	1134.5532	0.32224	0.00018312	-1.7358	-0.00098642	-1.4136	-0.0008033	568.7844210712648	68.519	0.80276	68.499	68.172	68.975	-0.019157					53	28	3	0	0	0	0.2322	1	17254	17254		14.838	1.3304	1	264740			4150	11755	2096	2096	5508	5508					-0.008693129118000797
CITIRCHTLI	10	Unmodified	_CITIRCHTLI_					0	0	0			REV__ENST00000340855.10_2_X:148564287-148564377:-|nuORF	REV__ENST00000340855.10_2_X:148564287-148564377:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.833984375	2	586.817561	1171.62057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.253	1	81.229	80.729	81.729	-0.02404								0	0	0	0.36787	1	21140	21140		7.2892	0.56607	1		+		4151	20111	2097	2097	5509	5509					0.04162394027503069
CIVQFHPPGVF	11	Unmodified	_CIVQFHPPGVF_					0	0	0			REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.2237548828125	3	415.214593	1242.62195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.906	1	74.874	74.374	75.374	-0.031487								0	0	0	0.34161	1	19204	19204		5.0475	1.1712	1		+		4152	23233	2098	2098	5510	5510					0.010343513879206512
CKHRLDHTL	9	Unmodified	_CKHRLDHTL_					0	0	0			REV__ENSG00000261678|ENST00000569446|SCRT1	REV__ENSG00000261678|ENST00000569446|SCRT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7952880859375	2	561.795475	1121.5764	0.15448	8.6786E-05	0.42012	0.00023602	0.5746	0.00032281	561.7957968868445	61.19	3.6328	61.19	60.88	64.513	0					396	134	6	0	0	0	0.13748	4	15267	15027;15078;15218;15267		32.786	32.786	1	65648000	+		4153	19286	2099	2099	5511;5512;5513;5514	5514					0.020471259255373297
CKHRLDHTL	9	Unmodified	_CKHRLDHTL_					0	0	0			REV__ENSG00000261678|ENST00000569446|SCRT1	REV__ENSG00000261678|ENST00000569446|SCRT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.796142578125	2	561.795475	1121.5764	0.18255	0.00010256	0.40594	0.00022805	0.58849	0.00033061	561.7957646956646	61.14	3.6901	61.237	60.896	64.586	0.096985					330	134	4	0	0	0	0.11461	3	14983	14983;15035;15181		36.127	36.127	1	65632000	+		4154	19286	2099	2099	5515;5516;5517	5515					0.020471259255373297
CKHRLDHTL	9	Unmodified	_CKHRLDHTL_					0	0	0			REV__ENSG00000261678|ENST00000569446|SCRT1	REV__ENSG00000261678|ENST00000569446|SCRT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7963256835938	2	561.795475	1121.5764	0.12119	6.8086E-05	0.57575	0.00032345	0.69694	0.00039154	561.7958436262629	61.182	3.5273	61.172	60.812	64.339	-0.0094566					329	129	5	0	0	0	0.11461	3	15006	15006;15057;15213		36.127	36.127	1	74596000	+		4155	19286	2099	2099	5518;5519;5520	5518					0.020471259255373297
CKLLKIWLI	9	Unmodified	_CKLLKIWLI_					0	0	0		ENST00000374994.8_2_9:101915172-101915277:+|nuORF	ENST00000374994.8_2_9:101915172-101915277:+|nuORF	ENST00000374994.8_2_9:101915172-101915277:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.744384765625	2	565.36193	1128.70931	-0.063114	-3.5682E-05	0.30689	0.0001735	0.24378	0.00013782	565.3619744419425	13.647	0.2582	13.647	13.509	13.767	0					19	8	3	0	0	0	0.26257	1	464	464		0.52476	0.52476	1	76112			4156	9905	2100	2100	5521	5521					0.15010177329486396
CKLLKIWLI	9	Unmodified	_CKLLKIWLI_					0	0	0		ENST00000374994.8_2_9:101915172-101915277:+|nuORF	ENST00000374994.8_2_9:101915172-101915277:+|nuORF	ENST00000374994.8_2_9:101915172-101915277:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	565.36193	1128.70931	-0.10496	-5.934E-05	0.13884	7.8495E-05	0.033882	1.9155E-05	565.3618704876455	13.74	0.22701	13.674	13.575	13.802	-0.066068	0.018932	0.0001771	NaN	0	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61989			4157	9905	2100	2100							0.15010177329486396
CKRKWRGPFIN	11	Unmodified	_CKRKWRGPFIN_					0	0	0			REV__ENST00000578942.5_1_18:211597-211870:+|nuORF	REV__ENST00000578942.5_1_18:211597-211870:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2362976074219	3	468.927558	1403.76084	-0.057699	-2.7057E-05	1.4381	0.00067435	1.3804	0.0006473	468.9285913592332	34.168	0.33945	34.235	34.066	34.405	0.06636					19	11	2	0	0	0	0.33236	1	6759	6759		4.4062	0.28952	1	114420	+		4158	22471	2101	2101	5522	5522					0.07511314076100462
CKRLHCIL	8	Unmodified	_CKRLHCIL_					0	0	0			REV__ENST00000549982.5_1_12:93895027-93895117:+|nuORF	REV__ENST00000549982.5_1_12:93895027-93895117:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.2546081542969	2	493.275332	984.536111	0.1357	6.6938E-05	-0.98809	-0.0004874	-0.85239	-0.00042046	493.27480020122886	29.575	0.42911	29.589	29.421	29.85	0.013475					25	14	2	0	0	0	0.3366	1	5340	5340		18.135	1.9859	1	235530	+		4159	22198	2102	2102	5523	5523					0.04322488001412239
CLAFRSPLSVF	11	Unmodified	_CLAFRSPLSVF_					0	0	0		nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;PAM|p.F927Lfs*11|1|0.07|ENSG00000145730|chr5:103028923-103028924|-/AAATGATAAAGTCAGAAGG|frameshift_variant;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM;PAM|p.L580Cfs*5|1|0.35|ENSG00000145730|chr5:103005161-103005161|T/-|frameshift_variant;ENST00000513648.5_1_5:102201854-102209236:+|nuORF	nc|ENSG00000145730|P19021-2|PAM	nc|ENSG00000145730|P19021-2|PAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.834228515625	2	620.331359	1238.64816	-0.13396	-8.3098E-05	-2.0976	-0.0013012	-2.2315	-0.0013843	620.3278784438116	100.14	0.5668	100.14	99.983	100.55	0					110	74	2	0	0	0	0.44523	1	26807	26807		5.2969	0.96765	1	97270			4160	4669	2103	2103	5524	5524					0.0383862055937243
CLCSLLVRL	9	Unmodified	_CLCSLLVRL_					0	0	0		ENST00000465952.5_1_13:31205393-31205561:+|nuORF	ENST00000465952.5_1_13:31205393-31205561:+|nuORF	ENST00000465952.5_1_13:31205393-31205561:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.30596923828125	2	510.290648	1018.56674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.7	1	112.71	112.21	113.21	0.0131								0	0	0	0.26334	1	29325	29325		2.0598	1.2661	1				4161	10806	2104	2104	5525	5525					0.05820221595797648
CLDVRIWNVM	10	Unmodified	_CLDVRIWNVM_					0	0	0		ENST00000265245.9_1_3:194379849-194380839:-|nuORF	ENST00000265245.9_1_3:194379849-194380839:-|nuORF	ENST00000265245.9_1_3:194379849-194380839:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.8157348632812	2	624.815018	1247.61548	-0.27164	-0.00016972	2.1078	0.001317	1.8361	0.0011473	624.8161343456553	12.876	0.25117	12.777	12.673	12.924	-0.099291					17	8	3	0	0	0	0.41168	1	282	282		1.3295	0.36726	1	33366			4162	9042	2105	2105	5526	5526					0.001580901648821964
CLELLKHP	8	Unmodified	_CLELLKHP_					0	0	0			REV__nc|ENSG00000144644|Q6ZQY3-3|GADL1	REV__nc|ENSG00000144644|Q6ZQY3-3|GADL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7684020996094	2	476.767863	951.521173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.924	1	71.98	71.48	72.48	0.056572								0	0	0	0.36961	1	18301	18301		5.7604	0	1		+		4163	16248	2106	2106	5527	5527					0.04347319405064809
CLFARAPL	8	Unmodified	_CLFARAPL_					0	0	0			REV__nc|ENSG00000140931|Q96MX0-2|CMTM3	REV__nc|ENSG00000140931|Q96MX0-2|CMTM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.7501525878906	2	445.749473	889.484393	0.68199	0.000304	1.0498	0.00046793	1.7317	0.00077192	445.7497504690499	77.466	0.90628	77.434	76.991	77.897	-0.031334					74	32	3	0	0	0	0.45015	1	19981	19981		5.7604	5.7604	1	775730	+		4164	16058	2107	2107	5528	5528					0.035230675791581234
CLFCIFLVF	9	Unmodified	_CLFCIFLVF_					0	0	0			REV__ENST00000271332.3_1_1:109817672-109818002:+|nuORF	REV__ENST00000271332.3_1_1:109817672-109818002:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.338134765625	2	552.784667	1103.55478	0.40346	0.00022302	-0.5626	-0.00031099	-0.15914	-8.7969E-05	552.7841976540487	88.382	0.55991	88.379	88.192	88.752	-0.0028458					62	25	3	0	0	0	0.15605	1	23296	23296		36.466	7.9793	1	297010	+		4165	19675	2108	2108	5529	5529					0.007146048526010418
CLFKKRIYE	9	Unmodified	_CLFKKRIYE_					0	0	0			REV__ENSG00000163376|ENST00000417314|KBTBD8	REV__ENSG00000163376|ENST00000417314|KBTBD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3342895507812	2	600.333901	1198.65325	0.71064	0.00042662	0.58222	0.00034953	1.2929	0.00077615	600.3340446435084	83.86	2.8022	83.937	83.243	86.045	0.077095					275	109	3	0	0	0	0.32733	1	22158	22158		4.756	1.1595	1	1104800	+		4166	17048	2109	2109	5530	5530					0.061869244220361
CLGLVCMKR	9	Unmodified	_CLGLVCMKR_					0	0	0			REV__ENSG00000205339|ENST00000379719|IPO7	REV__ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2500610351562	2	511.769025	1021.5235	-0.026476	-1.355E-05	-3.6076	-0.0018462	-3.634	-0.0018598	511.7672893061319	15.566	0.18361	15.502	15.333	15.517	-0.064413					8	5	2	0	0	0	0.26168	1	1029	1029		1.8442	1.3859	1	28818	+		4167	18989	2110	2110	5531	5531					0.01359708546863203
CLGVATVAVF	10	Unmodified	_CLGVATVAVF_					0	0	0			REV__ENSG00000178342|ENST00000316249|KCNG2	REV__ENSG00000178342|ENST00000316249|KCNG2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2678527832031	2	490.267696	978.520839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.777	1	73.777	73.277	74.277	0								0	0	0	0.34755	1	18873	18873		15.847	1.0089	1		+		4168	18029	2111	2111	5532	5532					0.030718996851987868
CLHKQGPLLF	10	Unmodified	_CLHKQGPLLF_					0	0	0			REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3197021484375	2	578.320794	1154.62703	0.2841	0.0001643	-0.7295	-0.00042189	-0.4454	-0.00025758	578.3200919467528	80.523	1.7605	80.496	79.228	80.989	-0.026825					91	66	2	0	0	0	0.37925	1	20967	20967		7.2892	0.56607	1	310290	+		4169	22898	2112	2112	5533	5533					0.05590655250534837
CLIHQRQIL	9	Unmodified	_CLIHQRQIL_					0	0	0		ENST00000473202.1_1_2:224847400-224847451:-|nuORF	ENST00000473202.1_1_2:224847400-224847451:-|nuORF	ENST00000473202.1_1_2:224847400-224847451:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8269653320312	2	562.323868	1122.63318	0.29749	0.00016728	-0.73278	-0.00041206	-0.43529	-0.00024478	562.8258098982169	45.735	1.5712	45.795	45.253	46.824	0.059837					161	56	5	0	0	0	0.1669	1	10211	10211		28.487	4.6971	1	10239000			4170	10903	2113	2113	5534	5534					0.07677173482056787
CLIKHQKI	8	Unmodified	_CLIKHQKI_					0	0	0		nc|ENSG00000185252|Q16587-4|ZNF74;nc|ENSG00000185252|Q16587-2|ZNF74;ENST00000476678.1_1_22:20755529-20761255:+|nuORF;nc|ENSG00000185252|Q16587-3|ZNF74;ENSG00000185252|ENST00000400451|ZNF74;ENST00000403682.7_1_22:20748811-20761255:+|nuORF	nc|ENSG00000185252|Q16587-4|ZNF74	nc|ENSG00000185252|Q16587-4|ZNF74	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.2843933105469	2	491.796955	981.579357	0.33597	0.00016523	0.33077	0.00016267	0.66674	0.0003279	491.7966279295459	49.53	1.1196	49.575	49.016	50.136	0.044891					56	41	2	0	0	0	0.33245	1	11304	11304		13.508	0.97634	1	366460			4171	7516	2114	2114	5535	5535					0.08783001050335315
CLIKHQKI	8	Unmodified	_CLIKHQKI_					0	0	0		nc|ENSG00000185252|Q16587-4|ZNF74;nc|ENSG00000185252|Q16587-2|ZNF74;ENST00000476678.1_1_22:20755529-20761255:+|nuORF;nc|ENSG00000185252|Q16587-3|ZNF74;ENSG00000185252|ENST00000400451|ZNF74;ENST00000403682.7_1_22:20748811-20761255:+|nuORF	nc|ENSG00000185252|Q16587-4|ZNF74	nc|ENSG00000185252|Q16587-4|ZNF74	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	491.796955	981.579357	0.45744	0.00022497	-1.1121	-0.00054691	-0.65462	-0.00032194	491.79613920572143	49.5	0.75785	49.5	49.292	50.05	0	-0.051606	-0.00012842	NaN	13.508	58	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215090			4172	7516	2114	2114							0.08783001050335315
CLIKHQKI	8	Unmodified	_CLIKHQKI_					0	0	0		nc|ENSG00000185252|Q16587-4|ZNF74;nc|ENSG00000185252|Q16587-2|ZNF74;ENST00000476678.1_1_22:20755529-20761255:+|nuORF;nc|ENSG00000185252|Q16587-3|ZNF74;ENSG00000185252|ENST00000400451|ZNF74;ENST00000403682.7_1_22:20748811-20761255:+|nuORF	nc|ENSG00000185252|Q16587-4|ZNF74	nc|ENSG00000185252|Q16587-4|ZNF74	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.796955	981.579357	0.28186	0.00013862	-1.1434	-0.0005623	-0.8615	-0.00042368	491.79626102261375	49.548	0.92036	49.58	49.268	50.189	0.032043	0.028595	-0.00015921	NaN	13.508	54	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267330			4173	7516	2114	2114							0.08783001050335315
CLIKSFEL	8	Unmodified	_CLIKSFEL_					0	0	0			REV__nc|ENSG00000217128|Q8TF40-3|FNIP1	REV__nc|ENSG00000217128|Q8TF40-3|FNIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7688903808594	2	476.762246	951.50994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.467	1	71.467	70.967	71.967	0								0	0	0	0.32762	1	18168	18168		24.674	1.5255	1		+		4174	19085	2115	2115	5536	5536					0.03224497310930019
CLKPTRKFAC	10	Unmodified	_CLKPTRKFAC_					0	0	0		ENST00000604433.1_1_1:114544224-114544314:-|nuORF	ENST00000604433.1_1_1:114544224-114544314:-|nuORF	ENST00000604433.1_1_1:114544224-114544314:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3565063476562	2	583.812279	1165.61	0.23171	0.00013527	1.8587	0.0010852	2.0904	0.0012204	584.3148697960297	80.068	0.50748	80.129	79.859	80.366	0.061417					36	18	3	0	0	0	0.31515	1	20773	20773		12.241	1.4167	1	239120			4175	12280	2116	2116	5537	5537					0.033824113731043326
CLLEQRQSL	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LLEQRQSL_	C(1)LLEQRQSL		C(46)LLEQRQSL		0	1	0			REV__nc|ENSG00000068137|Q7Z736-4|PLEKHH3	REV__nc|ENSG00000068137|Q7Z736-4|PLEKHH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8189697265625	2	573.800423	1145.58629	0.2842	0.00016307	-1.4055	-0.00080646	-1.1213	-0.00064339	573.7995300895918	64.872	1.4827	64.962	64.658	66.141	0.090385					118	54	3	0	0	0	0.069366	2	16098	16098;16125		45.7	12.255	1	6229900	+		4176	13698	2117	2117	5538;5539	5538	21				0.01932269140252174
CLLKIRTEWV	10	Unmodified	_CLLKIRTEWV_					0	0	0			REV__nc|ENSG00000164535|Q8NCG7-3|DAGLB	REV__nc|ENSG00000164535|Q8NCG7-3|DAGLB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.85986328125	2	630.860283	1259.70601	0.54665	0.00034486	-0.40531	-0.00025569	0.14134	8.9165E-05	630.8595479668895	85.924	2.6627	85.924	84.946	87.609	0					263	106	4	0	0	0	0.38515	2	22539	22539;22583		6.2058	3.2105	1	2656100	+		4177	17165	2118	2118	5540;5541	5540					0.08654882484825066
CLLKIRTEWV	10	Unmodified	_CLLKIRTEWV_					0	0	0			REV__nc|ENSG00000164535|Q8NCG7-3|DAGLB	REV__nc|ENSG00000164535|Q8NCG7-3|DAGLB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.8602294921875	2	630.860283	1259.70601	0.3725	0.000235	-0.10233	-6.4556E-05	0.27017	0.00017044	630.8598084653833	85.62	2.9451	85.704	84.958	87.903	0.084251					357	124	4	0	0	0	0.39745	1	22568	22568		3.9444	0.3479	1	2278600	+		4178	17165	2118	2118	5542	5542					0.08654882484825066
CLLKIRTEWV	10	Unmodified	_CLLKIRTEWV_					0	0	0			REV__nc|ENSG00000164535|Q8NCG7-3|DAGLB	REV__nc|ENSG00000164535|Q8NCG7-3|DAGLB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	630.860283	1259.70601	0.54647	0.00034475	-0.41301	-0.00026055	0.13347	8.4198E-05	630.8596973214932	85.777	2.7717	85.768	84.981	87.753	-0.0090027	-0.030671	-0.00012799	NaN	6.2058	335	114	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2131100	+		4179	17165	2118	2118							0.08654882484825066
CLQVPITK	8	Unmodified	_CLQVPITK_					0	0	0			REV__ENST00000598278.5_1_19:16742403-16758047:-|nuORF	REV__ENST00000598278.5_1_19:16742403-16758047:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.76104736328125	2	451.262413	900.510274	0.21812	9.8431E-05	-0.027195	-1.2272E-05	0.19093	8.6159E-05	451.26246029335283	23.426	0.6173	23.381	23.225	23.842	-0.044865					44	21	3	0	0	0	0.34131	1	3427	3427		12.532	0	1	206240	+		4180	21273	2119	2119	5543	5543					0.05603917030771299
CLRCFFPH	8	Unmodified	_CLRCFFPH_					0	0	0			REV__ENST00000433921.5_1_2:219503064-219516433:-|nuORF	REV__ENST00000433921.5_1_2:219503064-219516433:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.7388916015625	2	511.738583	1021.46261	0.021369	1.0935E-05	0.47352	0.00024232	0.49489	0.00025326	511.7388892868903	14.801	0.38926	14.801	14.591	14.981	0					36	13	4	0	0	0	0.46461	1	840	840		0.79363	0	1	146560	+		4181	14885	2120	2120	5544	5544					-0.04726060441055324
CLRLVCNPWF	10	Unmodified	_CLRLVCNPWF_					0	0	0		ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000196557|O95180-2|CACNA1H;CACNA1H|p.K1089Rfs*255|1|0.31|ENSG00000196557|chr16:1208118-1208118|C/-|frameshift_variant	ENSG00000196557|ENST00000348261|CACNA1H	ENSG00000196557|ENST00000348261|CACNA1H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.9102783203125	3	417.543945	1249.61	-0.13185	-5.5053E-05	-1.027	-0.0004288	-1.1588	-0.00048385	417.54347287613797	40.876	0.49172	40.876	40.634	41.125	0					30	17	2	0	0	0	0.318	1	8775	8775		6.6304	2.754	1	158670			4182	7879	2121	2121	5545	5545					-0.00481588626962548
CLRWVLVTAGV	11	Unmodified	_CLRWVLVTAGV_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8477783203125	2	608.847176	1215.6798	0.60642	0.00036922	-0.21119	-0.00012858	0.39523	0.00024063	608.8470173384787	83.949	2.9587	84.026	83.243	86.202	0.077095					317	115	4	0	0	0	0.44523	1	21962	21962		5.2969	0.39987	1	2064800			4183	3879	2122	2122	5546	5546					0.08058613313346541
CLSETHGER	9	Unmodified	_CLSETHGER_					0	0	0		nc|ENSG00000141582|O00257-3|CBX4;ENSG00000141582|ENST00000269397|CBX4	nc|ENSG00000141582|O00257-3|CBX4	nc|ENSG00000141582|O00257-3|CBX4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2490234375	2	516.232373	1030.45019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.588	1	23.588	23.088	24.088	0								0	0	0	0.24264	1	3493	3493		8.7454	1.4562	1				4184	4399	2123	2123	5547	5547					-0.06381425370409488
CLVDPIPCY	9	Unmodified	_CLVDPIPCY_					0	0	0			REV__nc|ENSG00000113790|Q08426-2|EHHADH	REV__nc|ENSG00000113790|Q08426-2|EHHADH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2500610351562	2	511.737914	1021.46127	-0.070656	-3.6157E-05	2.0395	0.0010437	1.9688	0.0010075	511.7388903489192	14.929	0.36852	14.865	14.7	15.069	-0.064414					32	12	4	0	0	0	0.25879	1	933	933		4.756	0.42677	1	135960	+		4185	14819	2124	2124	5548	5548					-0.04859739320500012
CLVYKSGK	8	Unmodified	_CLVYKSGK_					0	0	0		nc|ENSG00000134779|Q68CL5-5|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;ENSG00000134779|ENST00000334295|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2;nc|ENSG00000134779|Q68CL5-1|TPGS2	nc|ENSG00000134779|Q68CL5-1|TPGS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.74505615234375	2	449.246763	896.478974	-0.12405	-5.5731E-05	-0.11531	-5.1803E-05	-0.23937	-0.00010753	449.2467256559427	13.021	0.2733	13.021	12.9	13.174	0					14	9	2	0	0	0	0.34353	1	301	301		4.756	0	1	77020			4186	12708;3813	2125	2125	5549	5549					0.026593439966973165
CLWRGLGPC	9	Unmodified	_CLWRGLGPC_					0	0	0			REV__nc|ENSG00000185271|A6NCF5|KLHL33	REV__nc|ENSG00000185271|A6NCF5|KLHL33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.8860778808594	2	502.743865	1003.47318	0.020719	1.0416E-05	-1.3016	-0.00065439	-1.2809	-0.00064398	502.74361178357344	14.007	0.2907	14.007	13.847	14.138	0					15	9	2	0	0	0	0.25879	1	560	560		4.756	0	1	52037	+		4187	18368	2126	2126	5550	5550					-0.028420777866244862
CMDNSQESS	9	Unmodified	_CMDNSQESS_					0	0	0			REV__ENST00000443617.6_1_15:63944720-63946354:-|nuORF	REV__ENST00000443617.6_1_15:63944720-63946354:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.6715393066406	2	500.670957	999.32736	0.15687	7.8538E-05	1.1689	0.00058521	1.3257	0.00066375	500.6715640301889	17.456	0.69447	17.339	16.909	17.603	-0.11739					42	24	2	0	0	0	0.34809	1	1646	1646		1.6526	0.85899	1	66860	+		4188	21064	2127	2127	5551	5551					-0.1723304988398695
CMRIFAPK	8	Unmodified	_CMRIFAPK_					0	0	0		ENST00000455430.1_1_7:43313804-43313960:+|nuORF	ENST00000455430.1_1_7:43313804-43313960:+|nuORF	ENST00000455430.1_1_7:43313804-43313960:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2438659667969	2	483.256608	964.498663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.82	1	13.754	13.254	14.254	-0.066068								0	0	0	0.37078	1	538	538		5.2307	1.2863	1				4189	10686	2128	2128	5552	5552					0.014993967358009286
CMYRELTKI	9	Unmodified	_CMYRELTKI_					0	0	0			REV__ENSG00000183508|ENST00000369448|TENT5C	REV__ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7970581054688	2	578.796294	1155.57804	0.099582	5.7638E-05	0.72577	0.00042007	0.82535	0.00047771	578.7967229322998	26.013	0.52728	26.013	25.823	26.35	0					28	18	2	0	0	0	0.29638	1	4270	4270		9.3831	2.66	1	120640	+		4190	18267	2129	2129	5553	5553					0.006469988992648723
CMYRELTKI	9	Unmodified	_CMYRELTKI_					0	0	0			REV__ENSG00000183508|ENST00000369448|TENT5C	REV__ENSG00000183508|ENST00000369448|TENT5C	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	578.796294	1155.57804	0.099582	5.7638E-05	0.72577	0.00042007	0.82535	0.00047771	578.7967229322998	26.013	0.52728	26.013	25.823	26.35	0	-0.023832	-0.00012883	NaN	9.3831	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120640	+		4191	18267	2129	2129							0.006469988992648723
CMYRELTKI	9	Unmodified	_CMYRELTKI_					0	0	0			REV__ENSG00000183508|ENST00000369448|TENT5C	REV__ENSG00000183508|ENST00000369448|TENT5C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	578.796294	1155.57804	0.13265	7.6779E-05	1.1525	0.00066708	1.2852	0.00074386	578.7966552778719	26.089	0.4996	26.05	25.843	26.342	-0.038671	0.013137	0.00036519	NaN	9.3831	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148500	+		4192	18267	2129	2129							0.006469988992648723
CMYRELTKI	9	Unmodified	_CMYRELTKI_					0	0	0			REV__ENSG00000183508|ENST00000369448|TENT5C	REV__ENSG00000183508|ENST00000369448|TENT5C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	578.796294	1155.57804	0.22174	0.00012834	0.85108	0.0004926	1.0728	0.00062095	578.796738787916	26.07	0.51402	26.048	25.867	26.381	-0.022236	0.010695	1.6234E-05	NaN	9.3831	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180410	+		4193	18267	2129	2129							0.006469988992648723
CNETQESSC	9	Unmodified	_CNETQESSC_					0	0	0			REV__ENST00000434316.6_1_13:114149826-114150153:+|nuORF	REV__ENST00000434316.6_1_13:114149826-114150153:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.6713562011719	2	500.670957	999.32736	0.15687	7.8538E-05	1.1689	0.00058521	1.3257	0.00066375	500.6715640301889	17.456	0.69447	17.339	16.909	17.603	-0.11739					42	24	2	0	0	0	0.34923	1	1595	1595		1.4819	0.28856	1	66860	+		4194	20979	2130	2130	5554	5554					-0.1723304988398695
CNFFFFFFF	9	Unmodified	_CNFFFFFFF_					0	0	0		ENST00000460337.5_1_1:213180329-213180506:-|nuORF	ENST00000460337.5_1_1:213180329-213180506:-|nuORF	ENST00000460337.5_1_1:213180329-213180506:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.89617919921875	3	422.521134	1264.54157	0.12312	5.202E-05	-1.4742	-0.00062287	-1.3511	-0.00057085	422.5204178161189	40.514	0.70332	40.514	40.283	40.986	0					35	25	2	0	0	0	0.25417	1	8744	8744		2.7352	0	1	159140			4195	10727	2131	2131	5555	5555					-0.08011509935136019
CPEIYRKLLL	10	Unmodified	_CPEIYRKLLL_					0	0	0			REV__ENST00000455395.5_1_X:73501607-73501658:-|nuORF	REV__ENST00000455395.5_1_X:73501607-73501658:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.3656005859375	2	624.362659	1246.71076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.858	1	94.94	94.44	95.44	0.082779								0	0	0	0.38126	1	25315	25315		1.6526	0	1		+		4196	21161	2132	2132	5556	5556					0.09727766627588608
CPGLAPRDPR	10	Unmodified	_CPGLAPRDPR_					0	0	0		nc|ENSG00000137411|Q5ST30-2|VARS2;ENST00000469358.5_1_6:30889720-30893984:+|nuORF	nc|ENSG00000137411|Q5ST30-2|VARS2	nc|ENSG00000137411|Q5ST30-2|VARS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2824096679688	2	541.2822	1080.54985	0.5447	0.00029483	-1.8424	-0.00099727	-1.2977	-0.00070244	541.2819025998219	23.349	0.52944	23.305	23.084	23.614	-0.044867					58	18	5	0	0	0	0.39935	1	3470	3470		3.5965	0	1	239170			4197	10854	2133	2133	5557	5557					0.012794370342135153
CPHCCSSFIL	10	Unmodified	_CPHCCSSFIL_					0	0	0		ENST00000396504.6_1_22:41923998-41924697:-|nuORF	ENST00000396504.6_1_22:41923998-41924697:-|nuORF	ENST00000396504.6_1_22:41923998-41924697:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2313842773438	2	555.232473	1108.45039	0.38049	0.00021126	-4.2476	-0.0023584	-3.8671	-0.0021472	555.2308781076342	87.385	0.55179	87.472	87.278	87.83	0.087097					48	27	3	0	0	0	0.3641	1	23023	23023		10.074	0.72649	1	255720			4198	10117	2134	2134	5558	5558					-0.09949464966393862
CPKWTRRD	8	Unmodified	_CPKWTRRD_					0	0	0			REV__ENST00000508521.1_1_5:88244004-88261728:+|nuORF	REV__ENST00000508521.1_1_5:88244004-88261728:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.8099975585938	2	531.269093	1060.52363	0.41624	0.00022114	-1.7166	-0.00091195	-1.3003	-0.00069082	531.2682423879091	19.932	0.41825	19.932	19.627	20.045	0					25	14	2	0	0	0	0.34367	1	2337	2337		4.3292	0.73274	1	46525	+		4199	21774	2135	2135	5559	5559					-0.00420832137274374
CPNTYDCVTIF	11	Unmodified	_CPNTYDCVTIF_					0	0	0			REV__ENST00000481122.5_1_3:38180729-38182774:+|nuORF	REV__ENST00000481122.5_1_3:38180729-38182774:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.8923645019531	3	425.850992	1274.53115	0.048528	2.0666E-05	3.4544	0.0014711	3.5029	0.0014917	425.8522840640056	20.711	0.36884	20.711	20.514	20.883	0					13	12	2	0	0	0	0.33255	1	2673	2673		1.2148	0	1	25347	+		4200	17749	2136	2136	5560	5560					-0.09513905442531723
CPTLSEVNRYL	11	Unmodified	_CPTLSEVNRYL_					0	0	0		ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.2132568359375	3	432.220184	1293.63872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.261	1	53.252	52.752	53.752	-0.0096054								0	0	0	0.3134	1	12556	12556		16.275	4.0998	1				4201	8183	2137	2137	5561	5561					0.0036480748321991996
CQESPINVT	9	Unmodified	_CQESPINVT_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL;ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7481384277344	2	495.731674	989.448796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.555	1	67.633	67.133	68.133	0.078041								0	0	0	0.19189	1	16962	16962		24.991	1.8425	1				4202	12579	2138	2138	5562	5562					-0.04635059459178592
CQPIYTDSL	9	Unmodified	_CQPIYTDSL_					0	0	0			REV__ENSG00000042832|ENST00000220616|TG	REV__ENSG00000042832|ENST00000220616|TG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7716064453125	2	520.241875	1038.4692	0.13119	6.8252E-05	-0.74065	-0.00038532	-0.60946	-0.00031707	520.2418881388716	61.979	0.62634	61.971	61.7	62.327	-0.0085564					33	22	3	0	0	0	0.24311	1	15347	15347		11.64	6.8843	1	129350	+		4203	13534	2139	2139	5563	5563					-0.04849888799344626
CQPNKKYQR	9	Unmodified	_CQPNKKYQR_					0	0	0		ENSG00000180116|ENST00000324616|C12orf40;nc|ENSG00000180116|Q86WS4-2|REDIC1;nc|ENSG00000180116|Q86WS4-3|REDIC1	ENSG00000180116|ENST00000324616|C12orf40	ENSG00000180116|ENST00000324616|C12orf40	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.28515625	2	582.800757	1163.58696	0.00066054	3.8496E-07	-1.2115	-0.00070606	-1.2108	-0.00070567	582.8002048340197	14.712	0.27864	14.646	14.51	14.788	-0.066067					12	9	2	0	0	0	0.26168	1	799	799		1.8442	0	1	20274			4204	7167	2140	2140	5564	5564					0.01171108579956126
CQPQTFGCHPL	11	Unmodified	_CQPQTFGCHPL_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.85162353515625	3	410.851326	1229.53215	0.21135	8.6833E-05	0.62	0.00025473	0.83135	0.00034156	410.85149845078087	72.719	0.63243	72.773	72.539	73.172	0.053841					73	22	5	0	0	0	0.46218	1	18535	18535		3.0723	0.98626	1	462890			4205	3498	2141	2141	5565	5565					-0.07343646282947702
CQQRRCVRAM	10	Unmodified	_CQQRRCVRAM_					0	0	0			REV__ENST00000540664.5_1_10:98592059-98593206:+|nuORF	REV__ENST00000540664.5_1_10:98592059-98593206:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.8642578125	3	417.539088	1249.59543	0.044613	1.8628E-05	-0.29804	-0.00012444	-0.25342	-0.00010581	417.5387847624177	22.409	0.73249	22.315	22.023	22.756	-0.09379					68	26	3	0	0	0	0.32051	1	3095	3095		3.8763	0.80407	1	122450	+		4206	22117	2142	2142	5566	5566					-0.019379840467308895
CQQRRCVRAM	10	Unmodified	_CQQRRCVRAM_					0	0	0			REV__ENST00000540664.5_1_10:98592059-98593206:+|nuORF	REV__ENST00000540664.5_1_10:98592059-98593206:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	417.539088	1249.59543	-0.029926	-1.2495E-05	-0.31425	-0.00013121	-0.34418	-0.00014371	417.53885585907886	22.433	0.94786	22.389	21.977	22.925	-0.044867	0.034707	-3.8266E-05	NaN	3.8763	79	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97788	+		4207	22117	2142	2142							-0.019379840467308895
CRCLDFNNE	9	Unmodified	_CRCLDFNNE_					0	0	0		ENSG00000109927|ENST00000392793|TECTA	ENSG00000109927|ENST00000392793|TECTA	ENSG00000109927|ENST00000392793|TECTA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.81103515625	2	557.226233	1112.43791	0.41825	0.00023306	0.54431	0.00030331	0.96256	0.00053636	557.2263519187007	82.996	0.68954	82.975	82.621	83.311	-0.020576					93	27	5	0	0	0	0.25431	1	21644	21644		9.3831	1.473	1	1001000			4208	2281	2143	2143	5567	5567					-0.11380785105097857
CRCRAFTPK	9	Unmodified	_CRCRAFTPK_					0	0	0		ENST00000337198.9_1_8:103876093-103876378:-|nuORF	ENST00000337198.9_1_8:103876093-103876378:-|nuORF	ENST00000337198.9_1_8:103876093-103876378:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2742919921875	2	541.273321	1080.53209	0.2953	0.00015984	0.68066	0.00036842	0.97595	0.00052826	541.2735993267074	16.858	0.49764	16.744	16.532	17.029	-0.11434					30	17	2	0	0	0	0.34809	1	1484	1484		1.6526	0.17072	1	87458			4209	9493	2144	2144	5568	5568					-0.004956014923209295
CREEQYPCTR	10	Unmodified	_CREEQYPCTR_					0	0	0		ENST00000490075.5_1_1:17301417-17303350:-|nuORF;nc|ENSG00000117122|P55001-3|MFAP2;nc|ENSG00000117122|P55001-2|MFAP2;ENSG00000117122|ENST00000375535|MFAP2	ENST00000490075.5_1_1:17301417-17303350:-|nuORF	ENST00000490075.5_1_1:17301417-17303350:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.6111145019531	3	428.853507	1283.53869	-0.26588	-0.00011402	0.45336	0.00019442	0.18748	8.0399E-05	428.85360310920953	46.492	0.27358	46.547	46.383	46.657	0.054371					15	9	2	0	0	0	0.32095	1	10461	10461		3.0723	0	1	220130			4210	2775	2145	2145	5569	5569					-0.09173753122263406
CRFLLQWLIIL	11	Unmodified	_CRFLLQWLIIL_					0	0	0		ENSG00000127366|ENST00000247883|TAS2R5	ENSG00000127366|ENST00000247883|TAS2R5	ENSG00000127366|ENST00000247883|TAS2R5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7997131347656	3	473.284459	1416.83155	0.34361	0.00016263	-1.1416	-0.00054029	-0.79796	-0.00037766	473.28391132752733	21.534	0.36434	21.433	21.244	21.608	-0.10034					22	12	2	0	0	0	0.33334	1	2825	2825		1.2148	0.76031	1	49809			4211	3316	2146	2146	5570	5570					0.13980594341069263
CRFLLQWLIIL	11	Unmodified	_CRFLLQWLIIL_					0	0	0		ENSG00000127366|ENST00000247883|TAS2R5	ENSG00000127366|ENST00000247883|TAS2R5	ENSG00000127366|ENST00000247883|TAS2R5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	473.284459	1416.83155	0.24339	0.00011519	-0.70544	-0.00033387	-0.46205	-0.00021868	473.6185203857255	21.575	0.37181	21.526	21.29	21.661	-0.049377	0.061929	9.563E-05	NaN	1.2148	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53049			4212	3316	2146	2146							0.13980594341069263
CRFVVRLNS	9	Unmodified	_CRFVVRLNS_					0	0	0			REV__ENST00000537435.2_1_12:95928028-95941786:-|nuORF	REV__ENST00000537435.2_1_12:95928028-95941786:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.2756958007812	2	547.300393	1092.58623	0.56332	0.0003083	4.118	0.0022538	4.6814	0.0025621	547.3030257685442	29.951	0.36156	29.951	29.833	30.194	0					13	12	2	0	0	0	0.26168	1	5404	5404		1.8442	0.19162	1	53128	+		4213	22093	2147	2147	5571	5571					0.04364313930909702
CRLKLMKT	8	Unmodified	_CRLKLMKT_					0	0	0		ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2928466796875	2	496.790815	991.567077	0.35962	0.00017865	0.84578	0.00042018	1.2054	0.00059883	496.7912625046778	41.671	0.94071	41.671	41.225	42.166	0					59	38	2	0	0	0	0.22	1	9003	9003		39.957	39.957	1	4350600			4214	7562	2148	2148	5572	5572					0.07095641315629564
CRLKLMKT	8	Unmodified	_CRLKLMKT_					0	0	0		ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7916564941406	2	496.790815	991.567077	0.38427	0.0001909	0.87244	0.00043342	1.2567	0.00062432	496.79118565085514	41.622	1.0295	41.712	41.299	42.328	0.090252					77	41	2	0	0	0	0.23736	1	9042	9042		37.974	37.974	1	5498600			4215	7562	2148	2148	5573	5573					0.07095641315629564
CRLKLMKT	8	Unmodified	_CRLKLMKT_					0	0	0		ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7909851074219	2	496.790815	991.567077	0.60567	0.00030089	0.5982	0.00029718	1.2039	0.00059807	496.7911621399605	41.48	1.1585	41.577	41.259	42.418	0.096626					80	44	2	0	0	0	0.33441	1	8955	8955		26.884	0.61551	1	4793600			4216	7562	2148	2148	5574	5574					0.07095641315629564
CRLKPKGLF	9	Unmodified	_CRLKPKGLF_					0	0	0		ENSG00000250782|ENST00000512227|TAF11L14	ENSG00000250782|ENST00000512227|TAF11L14	ENSG00000250782|ENST00000512227|TAF11L14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3191528320312	2	531.318054	1060.62156	0.59617	0.00031676	0.99733	0.0005299	1.5935	0.00084665	531.3186504628845	84.826	1.7805	84.907	84.178	85.958	0.080887					159	69	4	0	0	0	0.30623	1	22465	22465		7.9102	2.1497	1	1019100			4217	8596	2149	2149	5575	5575					0.09366976458704812
CRMEMWFF	8	Unmodified	_CRMEMWFF_					0	0	0			REV__ENST00000337002.8_1_3:169701000-169703647:+|nuORF	REV__ENST00000337002.8_1_3:169701000-169703647:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8430786132812	2	575.237558	1148.46056	0.41212	0.00023707	-0.71349	-0.00041043	-0.30137	-0.00017336	575.237253066956	79.549	0.49924	79.611	79.418	79.917	0.061417					41	18	4	0	0	0	0.3439	1	20655	20655		2.8892	0.58649	1	166150	+		4218	20078	2150	2150	5576	5576					-0.10772857241181555
CRNIPIKNCR	10	Unmodified	_CRNIPIKNCR_					0	0	0		ENST00000524717.5_1_11:96075436-96075634:-|nuORF	ENST00000524717.5_1_11:96075436-96075634:-|nuORF	ENST00000524717.5_1_11:96075436-96075634:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.7851867675781	3	406.218232	1215.63287	-0.14123	-5.737E-05	-0.51115	-0.00020764	-0.65238	-0.00026501	406.2190444632792	23.933	1.0128	23.86	23.285	24.298	-0.072559					65	34	3	0	0	0	0.31889	1	3627	3627		3.3196	0	1	53553			4219	11524	2151	2151	5577	5577					0.033674304905616737
CRNIPIKNCR	10	Unmodified	_CRNIPIKNCR_					0	0	0		ENST00000524717.5_1_11:96075436-96075634:-|nuORF	ENST00000524717.5_1_11:96075436-96075634:-|nuORF	ENST00000524717.5_1_11:96075436-96075634:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	406.218232	1215.63287	0.013952	5.6674E-06	1.8086	0.00073467	1.8225	0.00074034	406.2191142593823	23.635	0.57445	23.596	23.391	23.965	-0.038927	-0.13193	0.00078331	NaN	3.3196	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74540			4220	11524	2151	2151							0.033674304905616737
CRNNLHYLN	9	Unmodified	_CRNNLHYLN_					0	0	0		ENSG00000214595|ENST00000356458|EML6;nc|ENSG00000214595|Q6ZMW3-2|EML6	ENSG00000214595|ENST00000356458|EML6	ENSG00000214595|ENST00000356458|EML6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.281494140625	2	573.777282	1145.54001	0.43959	0.00025223	-3.2389	-0.0018584	-2.7993	-0.0016062	573.7754772376352	78.996	0.48701	78.996	78.802	79.289	0					33	20	2	0	0	0	0.25706	1	20511	20511		6.7232	0.51738	1	143490			4221	8386	2152	2152	5578	5578					-0.026937509711842722
CRNNLHYLN	9	Unmodified	_CRNNLHYLN_					0	0	0		ENSG00000214595|ENST00000356458|EML6;nc|ENSG00000214595|Q6ZMW3-2|EML6	ENSG00000214595|ENST00000356458|EML6	ENSG00000214595|ENST00000356458|EML6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.2802124023438	2	573.777282	1145.54001	0.51521	0.00029561	-2.4966	-0.0014325	-1.9814	-0.0011369	573.7761240774825	79.181	0.52444	79.152	78.824	79.348	-0.028923					36	22	2	0	0	0	0.2451	1	20484	20484		15.847	1.9411	1	139220			4222	8386	2152	2152	5579	5579					-0.026937509711842722
CRPAFLQLF	9	Unmodified	_CRPAFLQLF_					0	0	0			REV__ENST00000564176.5_1_16:31487914-31488894:+|nuORF	REV__ENST00000564176.5_1_16:31487914-31488894:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3077392578125	2	547.794412	1093.57427	0.69214	0.00037915	0.87283	0.00047813	1.565	0.00085728	548.293866245631	83.349	0.68419	83.349	82.874	83.558	0					39	26	2	0	0	0	0.24581	2	21695	21695;21742		16.942	3.4344	1	63966	+		4223	16047	2153	2153	5580;5581	5580					0.03122697187700396
CRRDCDEKF	9	Unmodified	_CRRDCDEKF_					0	0	0			REV__ENSG00000117148|ENST00000375406|ACTL8	REV__ENSG00000117148|ENST00000375406|ACTL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.2760620117188	2	586.252782	1170.49101	0.25014	0.00014664	0.39129	0.0002294	0.64143	0.00037604	586.2530568792671	60.969	1.0338	61.066	60.807	61.841	0.096985					76	37	3	0	0	0	0.23767	2	14973	14959;14973		18.146	0	1	1445900	+		4224	14957	2154	2154	5582;5583	5583					-0.08741407322440864
CRRDCDEKF	9	Unmodified	_CRRDCDEKF_					0	0	0			REV__ENSG00000117148|ENST00000375406|ACTL8	REV__ENSG00000117148|ENST00000375406|ACTL8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.2769775390625	2	586.252782	1170.49101	0.37951	0.00022249	0.49113	0.00028792	0.87064	0.00051041	586.2529120867673	60.99	0.99708	60.981	60.759	61.757	-0.0094566					60	36	2	0	0	0	0.24289	1	14948	14948		18.146	0	1	2129700	+		4225	14957	2154	2154	5584	5584					-0.08741407322440864
CRRGALLSL	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))RRGALLSL_	C(1)RRGALLSL		C(85)RRGALLSL		0	1	0		ENST00000415336.1_1_1:55352571-55352640:+|nuORF	ENST00000415336.1_1_1:55352571-55352640:+|nuORF	ENST00000415336.1_1_1:55352571-55352640:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3007202148438	2	523.300393	1044.58623	0.50029	0.0002618	0.26129	0.00013673	0.76158	0.00039853	523.3004472158013	87.481	1.7884	87.568	86.579	88.368	0.08709					243	85	5	0	0	0	0.006189	2	23063	23020;23063		85.272	10.849	1	3402400			4226	10309	2155	2155	5585;5586	5586	11				0.0657231393092843
CRRGALLSL	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))RRGALLSL_	C(1)RRGALLSL		C(85)RRGALLSL		0	1	0		ENST00000415336.1_1_1:55352571-55352640:+|nuORF	ENST00000415336.1_1_1:55352571-55352640:+|nuORF	ENST00000415336.1_1_1:55352571-55352640:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.300537109375	2	523.300393	1044.58623	0.56354	0.0002949	0.15123	7.9141E-05	0.71478	0.00037404	523.3004230675202	87.603	1.8373	87.597	86.911	88.749	-0.0056229					229	89	5	0	0	0	0.006189	1	23089	23089		85.272	10.849	1	2905900			4227	10309	2155	2155	5587	5587	11				0.0657231393092843
CRRRGPSYPA	10	Unmodified	_CRRRGPSYPA_					0	0	0			REV__ENST00000360986.8_1_4:8594532-8594631:+|nuORF	REV__ENST00000360986.8_1_4:8594532-8594631:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.7969970703125	2	581.798549	1161.58254	-0.0031864	-1.8538E-06	-3.7286	-0.0021693	-3.7317	-0.0021711	581.7963521131201	30.231	0.39466	30.259	30.16	30.555	0.027157					17	13	2	0	0	0	0.2811	1	5529	5529		22.736	1.1461	1	110050	+		4228	20274	2156	2156	5588	5588					0.008216441570539246
CRSEKDWTPF	10	Unmodified	_CRSEKDWTPF_					0	0	0		ENST00000495070.2_1_1:155955164-155959287:-|nuORF	ENST00000495070.2_1_1:155955164-155959287:-|nuORF	ENST00000495070.2_1_1:155955164-155959287:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.245849609375	3	423.529129	1267.56556	-0.051299	-2.1727E-05	-1.942	-0.00082251	-1.9933	-0.00084424	423.5281549262914	24.415	0.40427	24.343	24.179	24.584	-0.072559					23	13	3	0	0	0	0.31969	1	3706	3706		5.7834	1.5939	1	34477			4229	11212	2157	2157	5589	5589					-0.05752321239424418
CRTFLQNTI	9	Unmodified	_CRTFLQNTI_					0	0	0		ENST00000538969.5_1_7:80267961-80267997:+|nuORF	ENST00000538969.5_1_7:80267961-80267997:+|nuORF	ENST00000538969.5_1_7:80267961-80267997:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2446899414062	2	548.284408	1094.55426	0.62904	0.00034489	0.79919	0.00043818	1.4282	0.00078308	548.284725151446	48.895	0.72257	48.94	48.571	49.293	0.044891					40	25	2	0	0	0	0.24993	1	11258	11258		13.042	2.2185	1	631580			4230	11708	2158	2158	5590	5590					0.010769014571224034
CRTWPGLVDT	10	Unmodified	_CRTWPGLVDT_					0	0	0		ENST00000421097.6_2_17:40718014-40718167:+|nuORF	ENST00000421097.6_2_17:40718014-40718167:+|nuORF	ENST00000421097.6_2_17:40718014-40718167:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.7716674804688	2	574.281866	1146.54918	0.50244	0.00028854	1.5587	0.00089512	2.0611	0.0011837	574.2830166524118	21.484	0.30975	21.384	21.188	21.498	-0.10034					16	10	2	0	0	0	0.32072	1	2860	2860		2.9952	0	1	50271			4231	10369	2159	2159	5591	5591					-0.018234024055118425
CRTWPGLVDT	10	Unmodified	_CRTWPGLVDT_					0	0	0		ENST00000421097.6_2_17:40718014-40718167:+|nuORF	ENST00000421097.6_2_17:40718014-40718167:+|nuORF	ENST00000421097.6_2_17:40718014-40718167:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.7715454101562	2	574.281866	1146.54918	0.28549	0.00016395	1.0055	0.00057747	1.291	0.00074142	574.2821745401534	21.369	0.34072	21.319	21.179	21.52	-0.049377					14	11	2	0	0	0	0.32072	1	2809	2809		2.9952	0.93549	1	53417			4232	10369	2159	2159	5592	5592					-0.018234024055118425
CRWAGLPRQGF	11	Unmodified	_CRWAGLPRQGF_					0	0	0		nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;ENSG00000155363|ENST00000369645|MOV10;ENST00000482545.5_1_1:113239451-113241292:+|nuORF;ENST00000488160.5_1_1:113239361-113241636:+|nuORF	nc|ENSG00000155363|Q9HCE1-2|MOV10	nc|ENSG00000155363|Q9HCE1-2|MOV10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8885192871094	3	430.888991	1289.64514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.373	1	29.387	28.887	29.887	0.013474								0	0	0	0.366	1	5242	5242		4.7159	3.3863	1				4233	5171	2160	2160	5593	5593					0.011907902252005442
CSCLHSCL	8	Unmodified	_CSCLHSCL_					0	0	0			REV__ENSG00000134013|ENST00000389131|LOXL2	REV__ENSG00000134013|ENST00000389131|LOXL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.5943908691406	2	433.171884	864.329215	-0.11912	-5.1599E-05	-0.049171	-2.1299E-05	-0.16829	-7.2899E-05	433.1718334100705	24.113	2.573	24.04	22.805	25.378	-0.072559					141	89	2	0	0	0	0.34092	1	3860	3860		13.508	0	1	87878	+		4234	15649	2161	2161	5594	5594					-0.10837667609098389
CSECGKAFRH	10	Unmodified	_CSECGKAFRH_					0	0	0		ENST00000527740.1_1_8:145998653-146003561:-|nuORF;ENSG00000196378|ENST00000429371|ZNF34;nc|ENSG00000196378|Q8IZ26|ZNF34;nc|ENSG00000198464|Q8WV37-3|ZNF480;nc|ENSG00000152439|Q6PK81-2|ZNF773;ENSG00000152439|ENST00000282292|ZNF773;ENST00000523439.1_1_19:58003464-58005455:+|nuORF;nc|ENSG00000198464|Q8WV37-2|ZNF480;nc|ENSG00000105136|Q96HQ0-6|ZNF419;nc|ENSG00000105136|Q96HQ0-2|ZNF419;nc|ENSG00000105136|Q96HQ0-3|ZNF419;nc|ENSG00000105136|Q96HQ0-4|ZNF419;ENSG00000105136|ENST00000221735|ZNF419;nc|ENSG00000105136|Q96HQ0-5|ZNF419;ENSG00000198464|ENST00000595962|ZNF480	ENST00000527740.1_1_8:145998653-146003561:-|nuORF	ENST00000527740.1_1_8:145998653-146003561:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.2490234375	2	569.250043	1136.48553	0.34253	0.00019499	-1.4039	-0.00079919	-1.0614	-0.0006042	569.249430486525	21.189	0.71833	21.189	20.883	21.601	0					64	24	4	0	0	0	0.39227	1	2726	2726		4.897	1.3005	1	215440			4235	7856	2162	2162	5595	5595					-0.07725086114260193
CSHHIWILKN	10	Unmodified	_CSHHIWILKN_					0	0	0			REV__ENST00000474457.1_1_6:52958219-52962625:+|nuORF	REV__ENST00000474457.1_1_6:52958219-52962625:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.2820739746094	3	417.553609	1249.639	-0.1217	-5.0817E-05	1.423	0.00059416	1.3013	0.00054335	417.5542402041874	24.197	0.95914	24.197	23.857	24.817	0					57	32	3	0	0	0	0.32132	1	3592	3592		0.62683	0	1	111190	+		4236	14757	2163	2163	5596	5596					0.02416271993729424
CSKNLIKYQE	10	Unmodified	_CSKNLIKYQE_					0	0	0			REV__nc|ENSG00000125831|Q9H112-2|CST11	REV__nc|ENSG00000125831|Q9H112-2|CST11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5698547363281	3	409.213029	1224.61726	-0.21338	-8.732E-05	0.61908	0.00025333	0.40569	0.00016601	409.21333095063517	25.506	0.46431	25.45	25.186	25.65	-0.055931					29	15	2	0	0	0	0.31994	1	4112	4112		5.4027	0	1	95795	+		4237	15285	2164	2164	5597	5597					0.013934224544982499
CSMYRGSRRM	10	Unmodified	_CSMYRGSRRM_					0	0	0			REV__nc|ENSG00000147642|Q9NX95-5|SYBU	REV__nc|ENSG00000147642|Q9NX95-5|SYBU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.862548828125	3	416.191577	1245.5529	-0.20183	-8.3998E-05	-1.6106	-0.00067033	-1.8125	-0.00075433	416.8611764037314	19.519	0.69376	19.519	19.183	19.877	0					39	21	3	0	0	0	0.32162	1	2358	2358		0.15932	0	1	32800	+		4238	16398	2165	2165	5598	5598					-0.06005379174939662
CSPYARILR	9	Unmodified	_CSPYARILR_					0	0	0		nc|ENSG00000112984|O95235-2|KIF20A;ENSG00000112984|ENST00000394894|KIF20A	nc|ENSG00000112984|O95235-2|KIF20A	nc|ENSG00000112984|O95235-2|KIF20A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.37353515625	2	539.794943	1077.57533	0.26361	0.00014229	-0.92199	-0.00049768	-0.65838	-0.00035539	540.2963846644603	39.28	0.29601	39.373	39.201	39.497	0.09267					13	10	2	0	0	0	0.2322	1	8224	8224		20.454	2.3186	1	122000			4239	2469	2166	2166	5599	5599					0.03964911556613515
CSPYARILR	9	Unmodified	_CSPYARILR_					0	0	0		nc|ENSG00000112984|O95235-2|KIF20A;ENSG00000112984|ENST00000394894|KIF20A	nc|ENSG00000112984|O95235-2|KIF20A	nc|ENSG00000112984|O95235-2|KIF20A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3736572265625	2	539.794943	1077.57533	0.61512	0.00033204	1.4451	0.00078005	2.0602	0.0011121	539.7958999639327	39.22	0.51865	39.319	39.046	39.565	0.099403					26	18	2	0	0	0	0.2322	1	8200	8200		20.454	2.3186	1	93300			4240	2469	2166	2166	5600	5600					0.03964911556613515
CSQEEAGAA	9	Unmodified	_CSQEEAGAA_					0	0	0		nc|ENSG00000005379|O95153-2|TSPOAP1;ENSG00000005379|ENST00000343736|TSPOAP1;nc|ENSG00000005379|O95153-3|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5945739746094	2	433.17145	864.328346	-0.11129	-4.8207E-05	-0.37375	-0.0001619	-0.48504	-0.0002101	433.17180733786734	23.752	2.4865	23.713	22.715	25.201	-0.038927					148	87	3	0	0	0	0.25622	1	3941	3941		7.2892	7.2892	1	115920			4241	333	2167	2167	5601	5601					-0.10924467452787212
CSRCCEKK	8	Unmodified	_CSRCCEKK_					0	0	0		ENST00000517825.1_1_8:25890599-25902375:-|nuORF;ENSG00000221818|ENST00000520164|EBF2	ENST00000517825.1_1_8:25890599-25902375:-|nuORF	ENST00000517825.1_1_8:25890599-25902375:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.264892578125	2	478.709165	955.403777	-0.061011	-2.9206E-05	0.86621	0.00041466	0.8052	0.00038546	478.70952572116454	14.383	0.43439	14.279	14.131	14.565	-0.10466					38	14	4	0	0	0	0.34408	1	669	669		2.3027	1.6124	1	176270			4242	8419	2168	2168	5602	5602					-0.0757090479770568
CSSPPALKDGF	11	Unmodified	_CSSPPALKDGF_					0	0	0		CON__Q29RQ1	CON__Q29RQ1	CON__Q29RQ1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2537841796875	2	561.268424	1120.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.635	1	74.635	74.135	75.135	0								0	0	0	0.30959	1	19135	19135		17.113	0.1706	1			+	4243	226	2169	2169	5603	5603					-0.033145110167197345
CSWPHSPHHP	10	Unmodified	_CSWPHSPHHP_					0	0	0		ENST00000326956.11_1_1:54691347-54691953:-|nuORF	ENST00000326956.11_1_1:54691347-54691953:-|nuORF	ENST00000326956.11_1_1:54691347-54691953:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.305419921875	2	592.75635	1183.49815	0.60859	0.00036075	2.4806	0.0014704	3.0892	0.0018311	592.7578647055469	85.214	0.54718	85.201	84.961	85.508	-0.012833					32	21	2	0	0	0	0.31629	1	22436	22436		10.074	1.3285	1	176090			4244	9420	2170	2170	5604	5604					-0.08626306659698457
CSYCPKPSLL	10	Unmodified	_CSYCPKPSLL_					0	0	0			REV__ENST00000515773.5_1_6:43152048-43164205:+|nuORF	REV__ENST00000515773.5_1_6:43152048-43164205:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7697143554688	2	555.769745	1109.52494	0.18201	0.00010116	-0.18107	-0.00010063	0.00094648	5.2602E-07	555.7696276260032	69.27	0.66707	69.27	69.006	69.673	0					53	23	3	0	0	0	0.31867	1	17501	17501		18.146	4.2403	1	915830	+		4245	21848	2171	2171	5605	5605					-0.02544378883385434
CTAFHDNEETF	11	Unmodified	_CTAFHDNEETF_					0	0	0		ALB|p.Y435Tfs*14|1|0.19|ENSG00000163631|chr4:73417543-73417543|T/-|frameshift_variant;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-3|ALB	ALB|p.Y435Tfs*14|1|0.19|ENSG00000163631|chr4:73417543-73417543|T/-|frameshift_variant	ALB|p.Y435Tfs*14|1|0.19|ENSG00000163631|chr4:73417543-73417543|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.9224853515625	3	438.508282	1312.50302	0.099285	4.3537E-05	-2.5076	-0.0010996	-2.4083	-0.0010561	438.5072866774304	32.779	0.24228	32.834	32.73	32.973	0.055309					16	8	3	0	0	0	0.3331	1	6307	6307		2.2527	0.51045	1	95878		+	4246	26	2172	2172	5606	5606					-0.14073512098275387
CTIILKEGH	9	Unmodified	_CTIILKEGH_					0	0	0			REV__nc|ENSG00000143502|Q5VX71-4|SUSD4	REV__nc|ENSG00000143502|Q5VX71-4|SUSD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.31976318359375	2	507.276052	1012.53755	0.014683	7.4485E-06	3.6835	0.0018686	3.6982	0.001876	507.27825551412354	14.689	0.52149	14.585	14.273	14.795	-0.10466					27	17	2	0	0	0	0.25706	1	841	841		6.7232	0.51738	1	51861	+		4247	23017	2173	2173	5607	5607					0.03178400571164275
CTIKPSFFLL	10	Unmodified	_CTIKPSFFLL_					0	0	0		Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|75|2|sense	Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|75|2|sense	Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|75|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8133544921875	2	584.825378	1167.6362	0.13673	7.9965E-05	0.32094	0.00018769	0.45767	0.00026766	584.826236941096	94.94	0.82439	94.94	94.443	95.267	0					148	72	3	0	0	0	0.37925	1	25354	25354		7.2892	2.96	1	130770			4248	12391	2174	2174	5608	5608					0.059090038162139535
CTIPAFGNNAP	11	Unmodified	_CTIPAFGNNAP_					0	0	0		ENST00000446789.2_1_13:113621986-113622999:-|nuORF	ENST00000446789.2_1_13:113621986-113622999:-|nuORF	ENST00000446789.2_1_13:113621986-113622999:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2977905273438	2	552.760766	1103.50698	0.30247	0.00016719	-1.481	-0.00081864	-1.1785	-0.00065144	552.7590044197774	76.086	0.33295	76.054	75.857	76.189	-0.031487					12	11	2	0	0	0	0.32855	1	19520	19520		10.8	2.8894	1	85587			4249	10600	2175	2175	5609	5609					-0.04063377813895386
CTVSMFPLGGL	11	Unmodified	_CTVSMFPLGGL_					0	0	0		ENSG00000197241|ENST00000400906|SLC2A7	ENSG00000197241|ENST00000400906|SLC2A7	ENSG00000197241|ENST00000400906|SLC2A7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8211059570312	2	562.77757	1123.54059	0.16519	9.2963E-05	-2.459	-0.0013839	-2.2938	-0.0012909	562.776145060581	76.507	0.5172	76.56	76.289	76.806	0.053413					22	18	2	0	0	0	0.32667	1	19694	19694		13.042	2.9685	1	74639			4250	7946	2176	2176	5610	5610					-0.016240923663190188
CTVSMFPLGGL	11	Unmodified	_CTVSMFPLGGL_					0	0	0		ENSG00000197241|ENST00000400906|SLC2A7	ENSG00000197241|ENST00000400906|SLC2A7	ENSG00000197241|ENST00000400906|SLC2A7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8214111328125	2	562.77757	1123.54059	0.41086	0.00023122	-3.0963	-0.0017425	-2.6855	-0.0015113	562.7757174863913	76.572	0.33879	76.541	76.37	76.709	-0.031487					14	11	2	0	0	0	0.32667	1	19731	19731		13.042	2.9685	1	129440			4251	7946	2176	2176	5611	5611					-0.016240923663190188
CTYIQKEW	8	Unmodified	_CTYIQKEW_					0	0	0			REV__nc|ENSG00000175575|Q9BRP4-3|PAAF1	REV__nc|ENSG00000175575|Q9BRP4-3|PAAF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.770751953125	2	535.75241	1069.49027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.291	1	47.291	46.791	47.791	0								0	0	0	0.27792	1	10727	10727		32.305	5.4218	1		+		4252	17900	2177	2177	5612	5612					-0.04169878699826768
CVGREIDWLR	10	Unmodified	_CVGREIDWLR_					0	0	0			REV__nc|ENSG00000101849|O60907-2|TBL1X	REV__nc|ENSG00000101849|O60907-2|TBL1X	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.519775390625	3	416.216885	1245.62883	0.079252	3.2986E-05	-2.2535	-0.00093797	-2.1743	-0.00090498	416.2163941461684	29.059	0.34802	29.059	28.845	29.193	0					19	12	2	0	0	0	0.3183	1	5186	5186		5.4027	1.2132	1	57005	+		4253	14290	2178	2178	5613	5613					0.01583664268468965
CVHQYPGFI	9	Unmodified	_CVHQYPGFI_					0	0	0		ENST00000308893.8_1_16:29985383-29985953:+|nuORF	ENST00000308893.8_1_16:29985383-29985953:+|nuORF	ENST00000308893.8_1_16:29985383-29985953:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7847900390625	2	532.25512	1062.49569	0.58922	0.00031362	0.53089	0.00028257	1.1201	0.00059619	532.2553787061869	84.404	0.68006	84.481	84.201	84.881	0.077095					89	26	5	0	0	0	0.25066	1	22098	22098		11.64	11.64	1	590730			4254	9299	2179	2179	5614	5614					-0.03306155117365961
CVKFLFDIQ	9	Unmodified	_CVKFLFDIQ_					0	0	0		ENST00000474699.1_1_2:70443958-70451859:-|nuORF	ENST00000474699.1_1_2:70443958-70451859:-|nuORF	ENST00000474699.1_1_2:70443958-70451859:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7810668945312	2	556.794078	1111.5736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.661	1	77.716	77.216	78.216	0.055412								0	0	0	0.19534	1	20047	20047		24.021	3.5669	1				4255	10926	2180	2180	5615	5615					0.022278577479937667
CVLMQRILGNA	11	Unmodified	_CVLMQRILGNA_					0	0	0		MER103C_dup6995|chr14:33926307-33926497:+|1.2389462687893262|0.155889661157675|2.99|523.0|5|2|sense	MER103C_dup6995|chr14:33926307-33926497:+|1.2389462687893262|0.155889661157675|2.99|523.0|5|2|sense	MER103C_dup6995|chr14:33926307-33926497:+|1.2389462687893262|0.155889661157675|2.99|523.0|5|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.90692138671875	3	406.554621	1216.64203	-0.4725	-0.0001921	-0.3755	-0.00015266	-0.848	-0.00034476	406.8886991864731	12.394	0.12407	12.326	12.281	12.405	-0.06806					5	3	2	0	0	0	0.33347	1	109	109		0.45452	0.1855	1	7768.9			4256	12525	2181	2181	5616	5616					0.04237779056234103
CVMAPDKWGPF	11	Unmodified	_CVMAPDKWGPF_					0	0	0			REV__ENSG00000182747|ENST00000331858|SLC35D3	REV__ENSG00000182747|ENST00000331858|SLC35D3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.5282287597656	3	417.528072	1249.56239	-0.012182	-5.0863E-06	0.2644	0.0001104	0.25222	0.00010531	417.52824541669423	62.193	0.58041	62.193	61.945	62.526	0					55	21	4	0	0	0	0.45819	1	15346	15346		1.4551	0	1	465270	+		4257	18213	2182	2182	5617	5617					-0.052412876177868384
CVQHSIVVN	9	Unmodified	_CVQHSIVVN_					0	0	0		ENST00000367103.3_1_1:206907394-206907589:+|nuORF	ENST00000367103.3_1_1:206907394-206907589:+|nuORF	ENST00000367103.3_1_1:206907394-206907589:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.78546142578125	2	499.758027	997.5015	0.32868	0.00016426	0.50814	0.00025395	0.83682	0.00041821	499.7588036629947	49.642	0.15594	49.687	49.621	49.776	0.044891					7	5	2	0	0	0	0.24471	1	11478	11478		17.113	1.2657	1	68638			4258	9724	2183	2183	5618	5618					0.0026494339430200853
CVQYVQKHI	9	Unmodified	_CVQYVQKHI_					0	0	0		ENSG00000101000|ENST00000216968|PROCR	ENSG00000101000|ENST00000216968|PROCR	ENSG00000101000|ENST00000216968|PROCR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2962036132812	2	559.294776	1116.575	0.182	0.00010179	2.1627	0.0012096	2.3447	0.0013114	559.2960116399784	18.134	0.43138	18.134	17.96	18.391	0					19	14	2	0	0	0	0.34681	1	1847	1847		1.8442	0.19162	1	40321			4259	1657	2184	2184	5619	5619					0.021374918367882856
CVRESWQKSM	10	Unmodified	_CVRESWQKSM_					0	0	0			REV__ENSG00000171408|ENST00000308191|PDE7B	REV__ENSG00000171408|ENST00000308191|PDE7B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.5908203125	3	418.530364	1252.56926	0.15918	6.6623E-05	-1.5961	-0.00066803	-1.4369	-0.0006014	418.5297718125224	24.397	0.35154	24.325	24.118	24.47	-0.072559					15	11	2	0	0	0	0.32068	1	3695	3695		3.5871	0.74377	1	35957	+		4260	17633	2185	2185	5620	5620					-0.04691974737215787
CVRGSVKID	9	Unmodified	_CVRGSVKID_					0	0	0			REV__ENST00000483166.5_1_19:40743617-40745051:-|nuORF	REV__ENST00000483166.5_1_19:40743617-40745051:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7824401855469	2	488.765852	975.51715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.04	1	33.095	32.595	33.595	0.054371								0	0	0	0.20639	1	6359	6359		20.454	1.1966	1		+		4261	21517	2186	2186	5621	5621					0.02841229911348364
CVSTHSDFPFL	11	Unmodified	_CVSTHSDFPFL_					0	0	0			REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.5908203125	3	418.193746	1251.55941	0.12249	5.1224E-05	0.78501	0.00032829	0.9075	0.00037951	418.19433175648936	24.728	0.7502	24.672	24.168	24.918	-0.055931					39	25	3	0	0	0	0.33046	1	3695	3695		5.4027	2.7715	1	77552	+		4262	16061	2187	2187	5622	5622					-0.0563083947092764
CVSTHSDFPFL	11	Unmodified	_CVSTHSDFPFL_					0	0	0			REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	418.193746	1251.55941	-0.074469	-3.1142E-05	-0.58885	-0.00024625	-0.66332	-0.0002774	418.19357402997895	24.644	0.47756	24.644	24.395	24.872	0	-0.0042101	-0.00099402	NaN	5.4027	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61821	+		4263	16061	2187	2187							-0.0563083947092764
CVVGYSVPLL	10	Unmodified	_CVVGYSVPLL_					0	0	0			REV__ENSG00000175591|ENST00000393597|P2RY2	REV__ENSG00000175591|ENST00000393597|P2RY2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3050537109375	2	525.288628	1048.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.405	1	86.405	85.905	86.905	0								0	0	0	0.35754	1	22740	22740		11.64	3.047	1		+		4264	17901	2188	2188	5623	5623					0.04036455373739045
CVVGYSVPLL	10	Unmodified	_CVVGYSVPLL_					0	0	0			REV__ENSG00000175591|ENST00000393597|P2RY2	REV__ENSG00000175591|ENST00000393597|P2RY2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3054809570312	2	525.288628	1048.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.837	1	86.832	86.332	87.332	-0.0056229								0	0	0	0.36787	1	22855	22855		7.2892	0.93513	1		+		4265	17901	2188	2188	5624	5624					0.04036455373739045
CVVKGTTADLF	11	Unmodified	_CVVKGTTADLF_					0	0	0			REV__ENST00000575171.1_1_17:729096-882585:-|nuORF	REV__ENST00000575171.1_1_17:729096-882585:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.790283203125	2	577.299724	1152.5849	0.45173	0.00026078	-0.04085	-2.3583E-05	0.41088	0.0002372	577.2992307101516	67.72	0.84329	67.798	67.434	68.277	0.078041					49	29	2	0	0	0	0.41411	1	17087	17087		9.3831	0.035688	1	202720	+		4266	17402	2189	2189	5625	5625					0.014706350514643418
CVYFCMSLF	9	Unmodified	_CVYFCMSLF_					0	0	0		ENST00000262304.8_1_16:2139174-2139312:-|nuORF	ENST00000262304.8_1_16:2139174-2139312:-|nuORF	ENST00000262304.8_1_16:2139174-2139312:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7349243164062	2	556.734317	1111.45408	0.3875	0.00021573	0.66764	0.0003717	1.0551	0.00058743	556.7347458838932	86.632	1.0835	86.717	86.396	87.479	0.08477					148	46	6	0	0	0	0.30623	1	22838	22838		7.9102	7.9102	1	1265800			4267	8983	2190	2190	5626	5626					-0.09718795192566176
CVYFCMSLF	9	Unmodified	_CVYFCMSLF_					0	0	0		ENST00000262304.8_1_16:2139174-2139312:-|nuORF	ENST00000262304.8_1_16:2139174-2139312:-|nuORF	ENST00000262304.8_1_16:2139174-2139312:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7350463867188	2	556.734317	1111.45408	0.39932	0.00022232	0.64358	0.00035831	1.0429	0.00058062	556.7347131031072	86.77	0.98655	86.764	86.414	87.4	-0.0056229					133	40	6	0	0	0	0.30623	1	22821	22821		7.9102	0.62092	1	1024700			4268	8983	2190	2190	5627	5627					-0.09718795192566176
CVYVHPFGASL	11	Unmodified	_CVYVHPFGASL_					0	0	0			REV__ENST00000568395.1_1_16:2721378-2721618:-|nuORF	REV__ENST00000568395.1_1_16:2721378-2721618:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.2789916992188	2	596.794609	1191.57467	0.72615	0.00043336	-2.0434	-0.0012195	-1.3173	-0.00078615	596.7936068571586	47.784	0.30441	47.784	47.493	47.797	0					19	10	2	0	0	0	0.32667	1	10800	10800		13.042	2.2185	1	414430	+		4269	22392	2191	2191	5628	5628					-0.013459278830623589
CWSTALYWL	9	Unmodified	_CWSTALYWL_					0	0	0			REV__nc|ENSG00000157593|Q8TB61-4|SLC35B2	REV__nc|ENSG00000157593|Q8TB61-4|SLC35B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.721435546875	2	571.770603	1141.52665	0.48462	0.00027709	1.7305	0.00098946	2.2151	0.0012665	571.772016112697	79.25	0.55079	79.312	79.092	79.643	0.061409					37	24	2	0	0	0	0.25066	1	20610	20610		11.64	2.2572	1	124560	+		4270	23040	2192	2192	5629	5629					-0.03845001803119885
CYALKKLAEKV	11	Unmodified	_CYALKKLAEKV_					0	0	0			REV__ENSG00000221813|ENST00000641698|OR6B1	REV__ENSG00000221813|ENST00000641698|OR6B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3690795898438	2	633.367941	1264.72133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.39	1	112.39	111.89	112.89	0								0	0	0	0.38114	1	29216	29216		1.3295	0.80477	1		+		4271	19092	2193	2193	5630	5630					0.09955749281994031
CYIDYTNFED	10	Unmodified	_CYIDYTNFED_					0	0	0		nc|ENSG00000148143|Q96JM2-3|ZNF462;ENSG00000148143|ENST00000277225|ZNF462	nc|ENSG00000148143|Q96JM2-3|ZNF462	nc|ENSG00000148143|Q96JM2-3|ZNF462	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.3744506835938	2	641.750261	1281.48597	0.13107	8.4117E-05	-0.062522	-4.0123E-05	0.068552	4.3993E-05	641.7500891773147	65.401	0.56737	65.49	65.216	65.784	0.088882					24	20	2	0	0	0	0.32054	1	16371	16371		3.2813	0	1	102260			4272	4792	2194	2194	5631	5631					-0.14351432704097533
CYIDYTNFED	10	Unmodified	_CYIDYTNFED_					0	0	0		nc|ENSG00000148143|Q96JM2-3|ZNF462;ENSG00000148143|ENST00000277225|ZNF462	nc|ENSG00000148143|Q96JM2-3|ZNF462	nc|ENSG00000148143|Q96JM2-3|ZNF462	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	641.750261	1281.48597	0.39832	0.00025562	-0.06553	-4.2054E-05	0.33279	0.00021357	641.7501229576096	65.576	0.39385	65.576	65.293	65.686	0	0.049411	0.00033398	NaN	3.2813	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175980			4273	4792	2194	2194							-0.14351432704097533
CYIWAKKKR	9	Unmodified	_CYIWAKKKR_					0	0	0			REV__ENSG00000167543|ENST00000301057|TP53I13	REV__ENSG00000167543|ENST00000301057|TP53I13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.7846069335938	2	598.342061	1194.66957	0.59942	0.00035866	2.6659	0.0015951	3.2653	0.0019538	598.3437951596201	34.111	0.4515	34.177	33.983	34.435	0.066357					23	14	2	0	0	0	0.25938	1	6743	6743		4.3292	0.38484	1	145870	+		4274	17390	2195	2195	5632	5632					0.08002050378740933
CYIWAKKKR	9	Unmodified	_CYIWAKKKR_					0	0	0			REV__ENSG00000167543|ENST00000301057|TP53I13	REV__ENSG00000167543|ENST00000301057|TP53I13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	598.342061	1194.66957	0.40261	0.0002409	2.7383	0.0016385	3.1409	0.0018794	598.343915222054	34.23	0.39781	34.23	34.048	34.446	0	0.076966	8.3735E-05	NaN	4.3292	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110810	+		4275	17390	2195	2195							0.08002050378740933
CYIWAKKKR	9	Unmodified	_CYIWAKKKR_					0	0	0			REV__ENSG00000167543|ENST00000301057|TP53I13	REV__ENSG00000167543|ENST00000301057|TP53I13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	598.342061	1194.66957	0.26957	0.00016129	2.6444	0.0015823	2.914	0.0017436	598.3437055667612	33.985	0.35895	34.051	33.939	34.298	0.066704	-0.10143	-2.8603E-05	NaN	4.3292	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213030	+		4276	17390	2195	2195							0.08002050378740933
CYRHATYFY	9	Unmodified	_CYRHATYFY_					0	0	0			REV__ENST00000598118.1_1_19:35506495-35517042:+|nuORF	REV__ENST00000598118.1_1_19:35506495-35517042:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.2693481445312	2	612.268758	1222.52296	0.22532	0.00013796	0.51244	0.00031375	0.73776	0.00045171	612.2690155054903	74.019	1.9593	74.072	73.494	75.454	0.052361					210	69	4	0	0	0	0.31038	1	19001	19001		7.2892	7.2892	1	2345100	+		4277	14028	2196	2196	5633	5633					-0.07939671576991714
CYRLRKVF	8	Unmodified	_CYRLRKVF_					0	0	0			REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF	REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.80712890625	2	542.807854	1083.60115	0.37711	0.0002047	-0.024112	-1.3088E-05	0.353	0.00019161	542.8074841441646	76.352	0.9566	76.405	76.161	77.118	0.053413					68	33	3	0	0	0	0.4397	1	19622	19622		9.3474	3.6156	1	335750	+		4278	14321	2197	2197	5634	5634					0.06269805798910966
CYRLRKVF	8	Unmodified	_CYRLRKVF_					0	0	0			REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF	REV__ENST00000487195.5_1_13:46917522-46924493:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8080444335938	2	542.807854	1083.60115	0.6925	0.00037589	-0.1848	-0.00010031	0.5077	0.00027558	542.8074746075	76.527	1.1572	76.495	75.803	76.96	-0.031487					78	42	3	0	0	0	0.4397	1	19676	19676		9.3474	0.75416	1	439240	+		4279	14321	2197	2197	5635	5635					0.06269805798910966
CYRNNDIMPD	10	Unmodified	_CYRNNDIMPD_					0	0	0			REV__nc|ENSG00000100462|O14744-4|PRMT5	REV__nc|ENSG00000100462|O14744-4|PRMT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.5428771972656	3	414.174357	1239.50124	-1.149	-0.00047587	-0.12475	-5.1669E-05	-1.2737	-0.00052754	414.1742768627163	35.101	0.43435	35.101	34.868	35.302	0					25	15	2	0	0	0	0.32082	1	6930	6930		1.5923	0	1	207080	+		4280	14203	2198	2198	5636	5636					-0.10892844387876721
CYTIIKIG	8	Unmodified	_CYTIIKIG_					0	0	0			REV__ENSG00000174502|ENST00000367135|SLC26A9	REV__ENSG00000174502|ENST00000367135|SLC26A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.5446472167969	2	455.756964	909.499375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.679	1	12.579	12.079	13.079	-0.099291								0	0	0	0.37992	1	200	200		0.79363	0	1		+		4281	17838	2199	2199	5637	5637					0.04100514656499854
CYVPLWKI	8	Unmodified	_CYVPLWKI_					0	0	0		ENST00000265343.9_1_5:132212001-132212091:-|nuORF	ENST00000265343.9_1_5:132212001-132212091:-|nuORF	ENST00000265343.9_1_5:132212001-132212091:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2806091308594	2	511.280606	1020.54666	0.46391	0.00023719	-0.97188	-0.0004969	-0.50797	-0.00025971	511.28001467906284	51.153	0.83141	51.162	50.621	51.452	0.0095634					58	31	2	0	0	0	0.33245	1	11889	11889		19.439	19.439	1	1010300			4282	9045	2200	2200	5638	5638					0.03720793927482191
DAAAFFKSV	9	Unmodified	_DAAAFFKSV_					0	0	0		nc|ENSG00000065923|Q96T83|SLC9A7;ENSG00000065923|ENST00000616978|SLC9A7	nc|ENSG00000065923|Q96T83|SLC9A7	nc|ENSG00000065923|Q96T83|SLC9A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.76373291015625	2	478.247818	954.481082	0.17377	8.3103E-05	0.048178	2.3041E-05	0.22194	0.00010614	478.247764368317	58.923	0.47631	58.923	58.712	59.188	0					28	16	2	0	0	0	0.07848	1	14297	14297		42.312	25.37	1	225200			4283	829	2201	2201	5639	5639					0.002020960061486221
DAAAFFKSV	9	Unmodified	_DAAAFFKSV_					0	0	0		nc|ENSG00000065923|Q96T83|SLC9A7;ENSG00000065923|ENST00000616978|SLC9A7	nc|ENSG00000065923|Q96T83|SLC9A7	nc|ENSG00000065923|Q96T83|SLC9A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.76385498046875	2	478.247818	954.481082	0.30529	0.000146	-0.28874	-0.00013809	0.016551	7.9157E-06	478.2476272716314	58.828	0.51099	58.92	58.645	59.156	0.091301					29	17	2	0	0	0	0.07848	1	14243	14243		42.312	21.859	1	229350			4284	829	2201	2201	5640	5640					0.002020960061486221
DAAAFFKSV	9	Unmodified	_DAAAFFKSV_					0	0	0		nc|ENSG00000065923|Q96T83|SLC9A7;ENSG00000065923|ENST00000616978|SLC9A7	nc|ENSG00000065923|Q96T83|SLC9A7	nc|ENSG00000065923|Q96T83|SLC9A7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.76373291015625	2	478.247818	954.481082	0.33588	0.00016064	0.20109	9.6171E-05	0.53697	0.00025681	478.2479697074714	58.976	0.50053	58.962	58.777	59.278	-0.014267					25	17	2	0	0	0	0.18733	1	14294	14294		35.612	12.464	1	271010			4285	829	2201	2201	5641	5641					0.002020960061486221
DAAAFFQSV	9	Unmodified	_DAAAFFQSV_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2294616699219	2	478.229625	954.444697	0.17813	8.5186E-05	-0.37292	-0.00017834	-0.1948	-9.3157E-05	478.22916163056277	73.103	2.4772	73.103	71.521	73.998	0					139	89	4	0	0	0	0.013404	1	18710	18710		74.2	36.024	1	1225200			4286	7251	2202	2202	5642	5642					-0.03434780890563616
DAAAFFQSV	9	Unmodified	_DAAAFFQSV_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2295227050781	2	478.229625	954.444697	0.18268	8.7363E-05	-0.17787	-8.5064E-05	0.0048071	2.2989E-06	478.2293142785904	73.017	1.2875	73.071	72.539	73.827	0.053833					91	46	3	0	0	0	0.038291	1	18696	18696		57.249	24.944	1	1083300			4287	7251	2202	2202	5643	5643					-0.03434780890563616
DAAAFFQSV	9	Unmodified	_DAAAFFQSV_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2295227050781	2	478.229625	954.444697	0.34945	0.00016712	-0.37478	-0.00017923	-0.025333	-1.2115E-05	478.2291123279157	73.121	2.2136	73.091	71.898	74.112	-0.029305					125	79	4	0	0	0	0.01909	1	18702	18702		65.474	32.688	1	1304500			4288	7251	2202	2202	5644	5644					-0.03434780890563616
DAAAKALRI	9	Unmodified	_DAAAKALRI_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.78240966796875	2	464.782359	927.550165	-0.081376	-3.7822E-05	0.41929	0.00019488	0.33792	0.00015706	464.78248009683665	31.69	1.2684	31.69	31.394	32.662	0					81	45	3	0	0	0	0.0013683	2	5959	5959;6016		118.07	36.293	1	3663000			4289	3143	2203	2203	5645;5646	5645					0.08349180025686564
DAAAKALRI	9	Unmodified	_DAAAKALRI_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7823791503906	2	464.782359	927.550165	-0.032009	-1.4877E-05	0.2189	0.00010174	0.18689	8.6862E-05	464.7823821393859	31.64	0.5673	31.682	31.427	31.994	0.042366					49	19	3	0	0	0	0.00045155	3	5950	5906;5950;5997		129.77	37.835	1	4227900			4290	3143	2203	2203	5647;5648;5649	5648					0.08349180025686564
DAAAKALRI	9	Unmodified	_DAAAKALRI_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.782470703125	2	464.782359	927.550165	0.19884	9.2417E-05	0.15774	7.3313E-05	0.35658	0.00016573	464.78235534808533	31.626	1.2516	31.667	31.365	32.616	0.040989					82	44	3	0	0	0	0.0013683	3	5936	5889;5936;5987		118.07	39.34	1	3992100			4291	3143	2203	2203	5650;5651;5652	5651					0.08349180025686564
DAADIVFLI	9	Unmodified	_DAADIVFLI_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.77117919921875	2	488.771126	975.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.655	1	98.655	98.155	99.155	0								0	0	0	0.20238	1	26401	26401		21.747	2.4897	1				4292	5669	2204	2204	5653	5653					0.038955358374209936
DAADIVFLI	9	Unmodified	_DAADIVFLI_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7712707519531	2	488.771126	975.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.78	1	98.78	98.28	99.28	0								0	0	0	0.016116	1	26437	26437		71.134	29.039	1				4293	5669	2204	2204	5654	5654					0.038955358374209936
DAADIVFLI	9	Unmodified	_DAADIVFLI_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.77117919921875	2	488.771126	975.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.902	1	98.902	98.402	99.402	0								0	0	0	2.574E-06	1	26467	26467		117.6	49.518	1				4294	5669	2204	2204	5655	5655					0.038955358374209936
DAADIVFLI	9	Unmodified	_DAADIVFLI_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7712707519531	2	488.771126	975.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.037	1	99.037	98.537	99.537	0								0	0	0	0.11063	1	26504	26504		43.858	16.229	1				4295	5669	2204	2204	5656	5656					0.038955358374209936
DAADIVFLI	9	Unmodified	_DAADIVFLI_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7713623046875	2	488.771126	975.527698	0.096953	4.7388E-05	-0.081684	-3.9925E-05	0.015269	7.463E-06	488.77122071675655	98.711	1.1607	98.762	98.335	99.495	0.050888					323	148	4	0	0	0	0.0085732	4	26454	26387;26419;26454;26484		81.613	30.758	1	1321100			4296	5669	2204	2204	5657;5658;5659;5660	5659					0.038955358374209936
DAADIVFLI	9	Unmodified	_DAADIVFLI_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7712097167969	2	488.771126	975.527698	0.27314	0.0001335	-0.21276	-0.00010399	0.060382	2.9513E-05	488.7711353178601	98.868	1.2162	98.861	98.46	99.676	-0.0069046					336	149	4	0	0	0	0.0041925	4	26511	26447;26479;26511;26541		92.822	32.433	1	1235300			4297	5669	2204	2204	5661;5662;5663;5664	5663					0.038955358374209936
DAAEFAISI	9	Unmodified	_DAAEFAISI_					0	0	0		nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1	nc|ENSG00000141968|P15498-2|VAV1	nc|ENSG00000141968|P15498-2|VAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.73724365234375	2	468.737283	935.460012	0.22253	0.00010431	0.078066	3.6593E-05	0.3006	0.0001409	468.7371274542228	77.137	1.7857	77.137	76.193	77.979	0					156	65	4	0	0	0	2.6052E-17	3	19897	19849;19897;19947		223.6	89.902	1	3910600			4298	4416	2205	2205	5665;5666;5667	5666					-0.010299140933739181
DAAEFAISI	9	Unmodified	_DAAEFAISI_					0	0	0		nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1	nc|ENSG00000141968|P15498-2|VAV1	nc|ENSG00000141968|P15498-2|VAV1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7373046875	2	468.737283	935.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.953	1	77.008	76.508	77.508	0.055412								0	0	0	1.4094E-16	1	19832	19832		172.91	64.909	1				4299	4416	2205	2205	5668	5668					-0.010299140933739181
DAAEFAISI	9	Unmodified	_DAAEFAISI_					0	0	0		nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1	nc|ENSG00000141968|P15498-2|VAV1	nc|ENSG00000141968|P15498-2|VAV1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7372741699219	2	468.737283	935.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.12	1	77.175	76.675	77.675	0.055412								0	0	0	1.3247E-24	1	19882	19882		205.38	71.683	1				4300	4416	2205	2205	5669	5669					-0.010299140933739181
DAAEFAISI	9	Unmodified	_DAAEFAISI_					0	0	0		nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1	nc|ENSG00000141968|P15498-2|VAV1	nc|ENSG00000141968|P15498-2|VAV1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.73724365234375	2	468.737283	935.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.286	1	77.341	76.841	77.841	0.055412								0	0	0	3.2571E-11	1	19932	19932		158.2	61.918	1				4301	4416	2205	2205	5670	5670					-0.010299140933739181
DAAEFAISI	9	Unmodified	_DAAEFAISI_					0	0	0		nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1	nc|ENSG00000141968|P15498-2|VAV1	nc|ENSG00000141968|P15498-2|VAV1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7371826171875	2	468.737283	935.460012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.458	1	77.513	77.013	78.013	0.055412								0	0	0	0.065718	1	19985	19985		56.177	14.337	1				4302	4416	2205	2205	5671	5671					-0.010299140933739181
DAAEFAISI	9	Unmodified	_DAAEFAISI_					0	0	0		nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1	nc|ENSG00000141968|P15498-2|VAV1	nc|ENSG00000141968|P15498-2|VAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7372131347656	2	468.737283	935.460012	0.54392	0.00025496	-0.43408	-0.00020347	0.10984	5.1487E-05	468.737002259655	77.143	1.2051	77.112	76.777	77.982	-0.031334					107	43	4	0	0	0	2.6052E-17	3	19894	19847;19894;19943		223.6	89.902	1	3269900			4303	4416	2205	2205	5672;5673;5674	5673					-0.010299140933739181
DAAEFRVV	8	Unmodified	_DAAEFRVV_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7376708984375	2	453.737617	905.460681	0.42812	0.00019426	-0.17397	-7.8939E-05	0.25415	0.00011532	453.7374479256128	45.537	0.70624	45.537	45.238	45.945	0					66	25	3	0	0	0	0.021656	1	10224	10224		99.799	24.87	1	1488300			4304	6939	2206	2206	5675	5675					0.004169253463373934
DAAEFRVV	8	Unmodified	_DAAEFRVV_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7376708984375	2	453.737617	905.460681	0.43324	0.00019658	-0.20747	-9.4138E-05	0.22577	0.00010244	453.7374583584951	45.41	0.83699	45.47	45.114	45.951	0.059834					69	29	3	0	0	0	0.013309	2	10169	10124;10169		111.29	26.015	1	1520600			4305	6939	2206	2206	5676;5677	5677					0.004169253463373934
DAAEFRVV	8	Unmodified	_DAAEFRVV_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.7377624511719	2	453.737617	905.460681	0.28113	0.00012756	-0.015353	-6.9663E-06	0.26578	0.00012059	453.7375441742886	45.388	0.75178	45.453	45.173	45.925	0.065048					70	27	4	0	0	0	0.021656	2	10123	10123;10172		99.799	23.719	1	1803700			4306	6939	2206	2206	5678;5679	5678					0.004169253463373934
DAAEIRLV	8	Unmodified	_DAAEIRLV_					0	0	0		NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant;ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.75341796875	2	443.753267	885.491981	0.50896	0.00022585	-0.25041	-0.00011112	0.25855	0.00011473	443.75313490872423	47.691	1.256	47.691	47.38	48.636	0					96	44	4	0	0	0	0.0054663	3	10865	10812;10865;10918		126.57	41.294	1	7805000			4307	2603	2207	2207	5680;5681;5682	5681					0.044654983804207404
DAAEIRLV	8	Unmodified	_DAAEIRLV_					0	0	0		NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant;ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.7532958984375	2	443.753267	885.491981	0.44231	0.00019628	-0.25271	-0.00011214	0.1896	8.4136E-05	443.7531426148852	47.659	1.2268	47.707	47.374	48.601	0.04752					95	45	4	0	0	0	0.011583	3	10792	10792;10841;10899		114.65	40.153	1	8204100			4308	2603	2207	2207	5683;5684;5685	5683					0.044654983804207404
DAAEIRLV	8	Unmodified	_DAAEIRLV_					0	0	0		NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant;ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.7532653808594	2	443.753267	885.491981	0.5548	0.0002462	-0.32439	-0.00014395	0.23041	0.00010225	443.7531056387132	47.66	1.1868	47.704	47.373	48.56	0.04332					107	44	4	0	0	0	0.011583	3	10783	10783;10832;10893		114.65	39.72	1	8901300			4309	2603	2207	2207	5686;5687;5688	5686					0.044654983804207404
DAAELVETI	9	Unmodified	_DAAELVETI_					0	0	0		nc|ENSG00000179889|Q6P996-3|PDXDC1;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7479553222656	2	480.747847	959.481142	0.2115	0.00010168	0.71748	0.00034493	0.92898	0.00044661	480.74797590351426	68.388	0.96632	68.388	68.101	69.067	0					70	35	3	0	0	0	5.6213E-07	3	17231	17185;17231;17280		158.2	76.59	1	1352800			4310	7150	2208	2208	5689;5690;5691	5690					-0.00021948784524283838
DAAELVETI	9	Unmodified	_DAAELVETI_					0	0	0		nc|ENSG00000179889|Q6P996-3|PDXDC1;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7481384277344	2	480.747847	959.481142	0.17888	8.5997E-05	0.9682	0.00046546	1.1471	0.00055146	480.74795662280206	68.333	1.0796	68.405	68.078	69.157	0.071938					92	39	3	0	0	0	0.00033443	2	17203	17203;17255		131.27	69.91	1	1504700			4311	7150	2208	2208	5692;5693	5692					-0.00021948784524283838
DAAELVETI	9	Unmodified	_DAAELVETI_					0	0	0		nc|ENSG00000179889|Q6P996-3|PDXDC1;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7480163574219	2	480.747847	959.481142	0.33901	0.00016298	0.52756	0.00025362	0.86657	0.0004166	480.74788762357747	68.408	1.0001	68.388	68.095	69.095	-0.01915					70	35	3	0	0	0	7.827E-05	3	17241	17191;17241;17295		144.35	73.217	1	1413200			4312	7150	2208	2208	5694;5695;5696	5695					-0.00021948784524283838
DAAFATLV	8	Unmodified	_DAAFATLV_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.2159118652344	2	404.215986	806.417419	-0.0093312	-3.7718E-06	0.13361	5.4009E-05	0.12428	5.0237E-05	404.21598162486475	68.801	0.7531	68.801	68.616	69.369	0					47	26	3	0	0	0	0.042326	1	17359	17359		81.864	32.195	1	627150			4313	3208;12082	2209	2209	5697	5697					0.006467355690460863
DAAFATLV	8	Unmodified	_DAAFATLV_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2159118652344	2	404.215986	806.417419	-0.098417	-3.9782E-05	0.24928	0.00010076	0.15087	6.0983E-05	404.2160306166539	68.728	0.78299	68.8	68.563	69.346	0.071938					50	28	2	0	0	0	0.042326	1	17335	17335		81.864	32.195	1	527890			4314	3208;12082	2209	2209	5698	5698					0.006467355690460863
DAAFATLV	8	Unmodified	_DAAFATLV_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2159729003906	2	404.215986	806.417419	-0.078397	-3.1689E-05	0.27969	0.00011306	0.20129	8.1366E-05	404.21598042834063	68.817	0.69579	68.798	68.516	69.212	-0.019157					54	24	3	0	0	0	0.026049	1	17344	17344		93.883	40.308	1	543320			4315	3208;12082	2209	2209	5699	5699					0.006467355690460863
DAAHAQTEV	9	Unmodified	_DAAHAQTEV_					0	0	0		ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.22003173828125	2	471.219788	940.425024	-0.11389	-5.3666E-05	0.16722	7.8799E-05	0.053337	2.5133E-05	471.22002103623475	18.806	1.5401	18.806	18.505	20.045	0					158	54	5	0	0	0	0.0041491	3	2056	2011;2056;2101		93.166	58.764	1	3446000			4316	5109	2210	2210	5700;5701;5702	5701					-0.04757156901325743
DAAHAQTEV	9	Unmodified	_DAAHAQTEV_					0	0	0		ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.219970703125	2	471.219788	940.425024	-0.012045	-5.676E-06	0.088917	4.1899E-05	0.076872	3.6223E-05	471.21997577177575	18.977	1.6492	18.859	18.531	20.18	-0.11739					163	57	5	0	0	0	0.0041491	3	2094	2050;2094;2139		93.166	60.86	1	3328600			4317	5109	2210	2210	5703;5704;5705	5704					-0.04757156901325743
DAAHAQTEV	9	Unmodified	_DAAHAQTEV_					0	0	0		ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.22003173828125	2	471.219788	940.425024	-0.030279	-1.4268E-05	0.049492	2.3322E-05	0.019213	9.0534E-06	471.2199487606379	18.888	1.4366	18.83	18.539	19.975	-0.058172					142	50	5	0	0	0	0.0016712	3	2084	2036;2084;2128		114.2	68.181	1	3555100			4318	5109	2210	2210	5706;5707;5708	5707					-0.04757156901325743
DAAHLLADV	9	Unmodified	_DAAHLLADV_					0	0	0		ENST00000497341.5_1_2:27480525-27481182:-|nuORF;ENSG00000115194|ENST00000233535|SLC30A3	ENST00000497341.5_1_2:27480525-27481182:-|nuORF	ENST00000497341.5_1_2:27480525-27481182:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.2770080566406	2	462.742899	923.471246	-0.33234	-0.00015379	0.93394	0.00043217	0.6016	0.00027839	462.7430805410224	39.47	0.64454	39.47	39.242	39.886	0					49	23	4	0	0	0	0.19839	1	8381	8381		28.487	0	1	496100			4319	2614	2211	2211	5709	5709					0.006449080007655539
DAAILALK	8	Unmodified	_DAAILALK_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.2131652832031	2	407.755278	813.496004	0.2432	9.9164E-05	-0.57479	-0.00023437	-0.33159	-0.00013521	407.75485431798336	48.104	0.41382	48.148	47.957	48.371	0.043324					21	15	2	0	0	0	0.31617	1	10977	10977		14.838	0	1	132440	+		4320	16560	2212	2212	5710	5710					0.08179587874144545
DAAKILIVI	9	Unmodified	_DAAKILIVI_					0	0	0		ENSG00000140678|ENST00000268296|ITGAX;ENST00000571644.1_1_16:31371321-31371865:+|nuORF	ENSG00000140678|ENST00000268296|ITGAX	ENSG00000140678|ENST00000268296|ITGAX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.31304931640625	2	478.312961	954.611368	0.18858	9.02E-05	0.012156	5.8142E-06	0.20073	9.6014E-05	478.3129051082438	70.762	1.9422	70.762	70.406	72.348	0					155	69	4	0	0	0	0.0079761	5	17950	17903;17950;18002;18052;18116		82.529	27.756	1	7596400			4321	4326	2213	2213	5711;5712;5713;5714;5715	5712					0.13224692005132965
DAAKILIVI	9	Unmodified	_DAAKILIVI_					0	0	0		ENSG00000140678|ENST00000268296|ITGAX;ENST00000571644.1_1_16:31371321-31371865:+|nuORF	ENSG00000140678|ENST00000268296|ITGAX	ENSG00000140678|ENST00000268296|ITGAX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.31304931640625	2	478.312961	954.611368	0.26029	0.0001245	-0.13757	-6.5801E-05	0.12273	5.8701E-05	478.3128396540566	70.761	2.1432	70.822	70.434	72.577	0.060783					153	77	5	0	0	0	0.0079761	4	17927	17880;17927;17976;18020		82.529	27.756	1	7491300			4322	4326	2213	2213	5716;5717;5718;5719	5717					0.13224692005132965
DAAKILIVI	9	Unmodified	_DAAKILIVI_					0	0	0		ENSG00000140678|ENST00000268296|ITGAX;ENST00000571644.1_1_16:31371321-31371865:+|nuORF	ENSG00000140678|ENST00000268296|ITGAX	ENSG00000140678|ENST00000268296|ITGAX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.31298828125	2	478.312961	954.611368	0.34335	0.00016423	-0.16977	-8.1202E-05	0.17358	8.3026E-05	478.3127986167787	70.816	1.9933	70.791	70.407	72.401	-0.024864					137	71	4	0	0	0	0.0079761	4	17946	17903;17946;17999;18049		82.529	26.947	1	5914400			4323	4326	2213	2213	5720;5721;5722;5723	5721					0.13224692005132965
DAAKQLGI	8	Unmodified	_DAAKQLGI_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.55645751953125	2	408.23471	814.454868	0.084028	3.4303E-05	-0.36347	-0.00014838	-0.27944	-0.00011408	408.2344940794556	38.041	0.41254	38.132	37.934	38.347	0.090881					20	14	2	0	0	0	0.27344	1	7884	7884		26.884	2.2098	1	110120			4324	273	2214	2214	5724	5724					0.04021826834662079
DAAKQLGI	8	Unmodified	_DAAKQLGI_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5567321777344	2	408.23471	814.454868	-0.018032	-7.3613E-06	-0.3432	-0.00014011	-0.36123	-0.00014747	408.2342227807831	37.977	0.42326	38.074	37.871	38.294	0.097527					30	14	3	0	0	0	0.29634	1	7852	7852		34.102	1.9855	1	129950			4325	273	2214	2214	5725	5725					0.04021826834662079
DAALQMITV	9	Oxidation (M)	_DAALQM(Oxidation (M))ITV_		DAALQM(1)ITV		DAALQM(87)ITV	0	0	1		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.25140380859375	2	489.252243	976.489932	0.16531	8.0879E-05	-0.50521	-0.00024718	-0.3399	-0.0001663	489.2519808840408	59.512	0.59877	59.512	59.188	59.787	0					36	20	2	0	0	0	0.0048951	1	14457	14457		87.258	8.5302	1	700760			4326	7673	2215	2215	5726	5726		845			0.00074701580308556
DAALQMITV	9	Oxidation (M)	_DAALQM(Oxidation (M))ITV_		DAALQM(1)ITV		DAALQM(78)ITV	0	0	1		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2525634765625	2	489.252243	976.489932	0.25607	0.00012528	0.34312	0.00016787	0.5992	0.00029316	489.2521782624638	59.356	0.66895	59.447	59.126	59.795	0.091305					46	23	4	0	0	0	0.010888	1	14416	14416		78.06	8.9556	1	693130			4327	7673	2215	2215	5727	5727		845			0.00074701580308556
DAALQMITV	9	Oxidation (M)	_DAALQM(Oxidation (M))ITV_		DAALQM(1)ITV		DAALQM(78)ITV	0	0	1		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2524719238281	2	489.252243	976.489932	0.47783	0.00023378	0.053246	2.6051E-05	0.53108	0.00025983	489.2520320693123	59.409	0.62323	59.396	59.115	59.738	-0.012928					46	21	4	0	0	0	0.010888	1	14456	14456		78.06	8.9556	1	690820			4328	7673	2215	2215	5728	5728		845			0.00074701580308556
DAAMKAMTI	9	2 Oxidation (M)	_DAAM(Oxidation (M))KAM(Oxidation (M))TI_		DAAM(1)KAM(1)TI		DAAM(97)KAM(97)TI	0	0	2		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2306213378906	2	492.230453	982.446353	0.21865	0.00010763	0.17626	8.6761E-05	0.39491	0.00019439	492.2303630268755	22.395	0.93478	22.395	21.94	22.875	0					71	32	3	0	0	0	0.003673	2	3078	3078;3141		96.936	64.15	1	382650			4329	5478	2216	2216	5729;5730	5729		657;658			-0.04557231188471178
DAAMKAMTI	9	2 Oxidation (M)	_DAAM(Oxidation (M))KAM(Oxidation (M))TI_		DAAM(1)KAM(1)TI		DAAM(97)KAM(97)TI	0	0	2		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.23065185546875	2	492.230453	982.446353	0.2309	0.00011365	0.19394	9.5464E-05	0.42484	0.00020912	492.2303725835109	22.433	1.0123	22.346	21.981	22.993	-0.087608					81	36	3	0	0	0	0.003673	2	3149	3100;3149		96.936	64.15	1	384680			4330	5478	2216	2216	5731;5732	5732		657;658			-0.04557231188471178
DAAMKAMTI	9	2 Oxidation (M)	_DAAM(Oxidation (M))KAM(Oxidation (M))TI_		DAAM(1)KAM(1)TI		DAAM(97)KAM(97)TI	0	0	2		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2306823730469	2	492.230453	982.446353	0.14811	7.2905E-05	0.30989	0.00015253	0.458	0.00022544	492.2304121174326	22.354	1.0668	22.305	22.038	23.105	-0.048838					88	37	3	0	0	0	0.003673	2	3184	3086;3184		96.936	64.15	1	359020			4331	5478	2216	2216	5733;5734	5734		657;658			-0.04557231188471178
DAANFRTV	8	Unmodified	_DAANFRTV_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.25396728515625	2	447.227417	892.44028	0.40716	0.00018209	-0.14919	-6.6723E-05	0.25796	0.00011537	447.22728745854283	32.095	0.89019	32.095	31.829	32.72	0					81	31	3	0	0	0	0.00032025	1	6097	6097		137.42	51.782	1	2148100			4332	12694	2217	2217	5735	5735					-0.010242453134651441
DAANFRTV	8	Unmodified	_DAANFRTV_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.2539367675781	2	447.227417	892.44028	0.41798	0.00018693	-0.2632	-0.00011771	0.15478	6.922E-05	447.2272995448615	31.987	0.92375	32.029	31.768	32.691	0.042364					84	32	4	0	0	0	0.0019453	1	6084	6084		114.2	28.56	1	2307800			4333	12694	2217	2217	5736	5736					-0.010242453134651441
DAANFRTV	8	Unmodified	_DAANFRTV_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.2538757324219	2	447.227417	892.44028	0.29306	0.00013106	-0.080688	-3.6086E-05	0.21237	9.4978E-05	447.2272843187184	32.014	1.004	32.055	31.748	32.752	0.040989					96	35	5	0	0	0	0.00032025	1	6085	6085		125.53	39.888	1	2172600			4334	12694	2217	2217	5737	5737					-0.010242453134651441
DAANVMVYV	9	Oxidation (M)	_DAANVM(Oxidation (M))VYV_		DAANVM(1)VYV		DAANVM(130)VYV	0	0	1		ENSG00000115548|ENST00000312912|KDM3A;ENST00000441719.5_1_2:86711112-86716803:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2367248535156	2	499.236593	996.458632	1.0272	0.0005128	-0.22753	-0.00011359	0.79965	0.00039922	499.2363407940723	56.143	1.0556	56.143	55.82	56.876	0					79	38	3	0	0	0	0.00033443	2	13487	13441;13487		131.27	78.999	1	5262900			4335	2659	2218	2218	5738;5739	5739		331			-0.03973871453774791
DAANVMVYV	9	Oxidation (M)	_DAANVM(Oxidation (M))VYV_		DAANVM(1)VYV		DAANVM(130)VYV	0	0	1		ENSG00000115548|ENST00000312912|KDM3A;ENST00000441719.5_1_2:86711112-86716803:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2370300292969	2	499.236593	996.458632	0.89637	0.0004475	-0.11486	-5.7344E-05	0.78151	0.00039016	499.236450286996	56.063	0.81609	56.134	55.828	56.644	0.070885					67	29	3	0	0	0	0.00033443	3	13452	13409;13452;13507		131.27	78.999	1	4796100			4336	2659	2218	2218	5740;5741;5742	5741		331			-0.03973871453774791
DAANVMVYV	9	Oxidation (M)	_DAANVM(Oxidation (M))VYV_		DAANVM(1)VYV		DAANVM(130)VYV	0	0	1		ENSG00000115548|ENST00000312912|KDM3A;ENST00000441719.5_1_2:86711112-86716803:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2371826171875	2	499.236593	996.458632	0.91527	0.00045694	0.029017	1.4486E-05	0.94429	0.00047142	499.2365550891299	56.171	0.71491	56.151	55.853	56.568	-0.019081					68	25	4	0	0	0	0.00033443	2	13453	13453;13503		131.27	82.922	1	3930700			4337	2659	2218	2218	5743;5744	5743		331			-0.03973871453774791
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7586975097656	2	451.758352	901.502152	-0.18711	-8.4527E-05	-0.4632	-0.00020925	-0.65031	-0.00029378	451.7587547164508	60.091	3.9314	60.091	59.65	63.581	0					370	145	5	0	0	0	0.0045426	15	14720	14579;14626;14671;14720;14770;14822;14865;14916;14975;15103;15164;15213;15268;15321;15589		128.37	46.752	1	199450000			4338	1681	2219	2219	5745;5746;5747;5748;5749;5750;5751;5752;5753;5754;5755;5756;5757;5758;5759	5748					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.75823974609375	2	451.758352	901.502152	0.24772	0.00011191	-0.12806	-5.7852E-05	0.11966	5.4057E-05	451.7582747315202	64.109	2.3178	64.109	63.581	65.899	0					137	84	2	0	0	0	0.04227	4	16067	15784;15845;15934;16067		81.89	29.622	1	400270			4339	1681	2219	2219	5760;5761;5762;5763	5763					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.75860595703125	2	451.758352	901.502152	-0.029964	-1.3537E-05	0.59496	0.00026878	0.56499	0.00025524	451.75824127281294	76.247	0.65339	76.247	75.769	76.422	0					33	23	2	0	0	0	0.37937	1	19657	19657		21.747	3.6117	1	180280			4340	1681	2219	2219	5764	5764					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7706298828125	2	451.758352	901.502152	0.44172	0.00019955	-0.7421	-0.00033525	-0.30038	-0.0001357	451.7580256821232	83.619	1.1258	83.619	82.782	83.908	0					68	42	2	0	0	0	0.42077	1	21922	21922		15.847	3.3156	1	79712			4341	1681	2219	2219	5765	5765					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.77081298828125	2	451.758352	901.502152	0.41861	0.00018911	-1.2975	-0.00058617	-0.87891	-0.00039705	451.7578786322783	84.279	1.1199	84.279	84.082	85.202	0					58	42	2	0	0	0	0.44569	1	22361	22361		7.2892	0.56607	1	116970			4342	1681	2219	2219	5766	5766					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.77081298828125	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.596	1	85.596	85.096	86.096	0								0	0	0	0.34734	1	22490	22490		15.847	3.3156	1				4343	1681	2219	2219	5767	5767					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7708435058594	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.633	1	85.633	85.133	86.133	0								0	0	0	0.34734	1	22502	22502		15.847	0.078963	1				4344	1681	2219	2219	5768	5768					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7708435058594	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.791	1	85.791	85.291	86.291	0								0	0	0	0.33122	1	22551	22551		23.148	3.7094	1				4345	1681	2219	2219	5769	5769					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7707214355469	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.823	1	85.823	85.323	86.323	0								0	0	0	0.35663	1	22561	22561		11.64	0.81637	1				4346	1681	2219	2219	5770	5770					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7708740234375	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.962	1	85.962	85.462	86.462	0								0	0	0	0.34957	1	22604	22604		14.838	2.3067	1				4347	1681	2219	2219	5771	5771					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7707214355469	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.311	1	86.311	85.811	86.811	0								0	0	0	0.33981	1	22711	22711		19.257	3.4098	1				4348	1681	2219	2219	5772	5772					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.77105712890625	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.633	1	86.633	86.133	87.133	0								0	0	0	0.35663	1	22810	22810		11.64	1.4569	1				4349	1681	2219	2219	5773	5773					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.77069091796875	2	451.758352	901.502152	0.33223	0.00015009	-0.33565	-0.00015163	-0.0034151	-1.5428E-06	451.7583093218298	77.259	0.91293	77.259	76.643	77.555	0					46	33	2	0	0	0	0.28769	1	19810	19810		30.637	10.183	1	148010			4350	1681	2219	2219	5774	5774					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2774658203125	2	451.758352	901.502152	0.20021	9.0446E-05	-0.76899	-0.0003474	-0.56878	-0.00025695	451.7581587973673	82.027	1.138	82.027	81.375	82.513	0					63	44	2	0	0	0	0.33661	1	21486	21486		13.906	5.9959	1	119200			4351	1681	2219	2219	5775	5775					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2776794433594	2	451.758352	901.502152	0.18474	8.3456E-05	-0.20018	-9.0435E-05	-0.015449	-6.9792E-06	451.7584207189421	69	1.2095	69	68.381	69.59	0					66	43	2	0	0	0	0.23494	1	17351	17351		54.774	12.679	1	193800			4352	1681	2219	2219	5776	5776					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2779541015625	2	451.758352	901.502152	0.18114	8.183E-05	-0.54628	-0.00024679	-0.36514	-0.00016496	451.7581347918903	72.866	2.2127	72.866	71.582	73.795	0					116	80	2	0	0	0	0.28088	1	18547	18547		39.957	11.47	1	169450			4353	1681	2219	2219	5777	5777					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.27777099609375	2	451.758352	901.502152	0.13077	5.9078E-05	-0.11119	-5.0229E-05	0.019588	8.8489E-06	451.7582338345568	70.096	0.84314	70.096	69.59	70.434	0					39	30	2	0	0	0	0.26342	1	17612	17612		39.95	3.8227	1	186930			4354	1681	2219	2219	5778	5778					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7800598144531	2	451.758352	901.502152	0.15259	6.8936E-05	0.055705	2.5165E-05	0.2083	9.4101E-05	451.758182536068	76.514	0.30314	76.514	76.422	76.725	0					17	10	2	0	0	0	0.27906	1	19688	19688		27.629	3.6082	1	95158			4355	1681	2219	2219	5779	5779					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7582092285156	2	451.758352	901.502152	-0.43772	-0.00019774	-0.16143	-7.2927E-05	-0.59915	-0.00027067	451.75889381546426	59.965	5.6453	60.06	59.631	65.277	0.095093					437	206	6	0	0	0	0.0045426	22	14728	14542;14587;14629;14681;14728;14770;14823;14871;14919;14970;15007;15079;15131;15191;15240;15289;15345;15536;15740;15797;16004;16109		128.37	46.752	1	200160000			4356	1681	2219	2219	5780;5781;5782;5783;5784;5785;5786;5787;5788;5789;5790;5791;5792;5793;5794;5795;5796;5797;5798;5799;5800;5801	5784					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.75787353515625	2	451.758352	901.502152	0.28549	0.00012897	-0.42897	-0.00019379	-0.14347	-6.4815E-05	451.75815630640164	65.91	1.4128	65.998	65.811	67.224	0.088882					78	50	2	0	0	0	0.12475	1	16817	16817		56.177	3.9087	1	247540			4357	1681	2219	2219	5802	5802					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7708435058594	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.697	1	85.781	85.281	86.281	0.084251								0	0	0	0.34492	1	22515	22515		16.942	3.4344	1				4358	1681	2219	2219	5803	5803					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.77081298828125	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.779	1	85.863	85.363	86.363	0.084251								0	0	0	0.33717	1	22540	22540		20.454	3.5113	1				4359	1681	2219	2219	5804	5804					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.77069091796875	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.054	1	86.139	85.639	86.639	0.084251								0	0	0	0.34734	1	22624	22624		15.847	3.3156	1				4360	1681	2219	2219	5805	5805					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2549743652344	2	451.758352	901.502152	0.23443	0.00010591	-0.65887	-0.00029765	-0.42444	-0.00019174	451.75803508859076	67.579	1.2573	67.657	67.183	68.44	0.078041					71	44	2	0	0	0	0.28769	1	16974	16974		37.974	3.8716	1	193050			4361	1681	2219	2219	5806	5806					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2778015136719	2	451.758352	901.502152	0.1735	7.8382E-05	-0.62436	-0.00028206	-0.45086	-0.00020368	451.75812795918245	72.429	2.3975	72.485	71.402	73.8	0.056572					115	87	2	0	0	0	0.28088	1	18466	18466		32.305	10.559	1	178810			4362	1681	2219	2219	5807	5807					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.27783203125	2	451.758352	901.502152	0.18153	8.2009E-05	-0.21109	-9.536E-05	-0.029554	-1.3351E-05	451.7583301662969	68.571	1.5932	68.643	68.434	70.027	0.071945					82	57	2	0	0	0	0.26342	1	17321	17321		47.749	11.622	1	294410			4363	1681	2219	2219	5808	5808					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7585144042969	2	451.758352	901.502152	0.041139	1.8585E-05	-0.6279	-0.00028366	-0.58677	-0.00026508	451.75870578596846	60.052	5.1882	60.04	59.621	64.809	-0.011486					397	189	5	0	0	0	0.018723	20	14612	14566;14612;14655;14699;14747;14797;14850;14898;14947;15000;15092;15153;15202;15251;15308;15364;15772;15821;15882;16055		103.75	42.391	1	197120000			4364	1681	2219	2219	5809;5810;5811;5812;5813;5814;5815;5816;5817;5818;5819;5820;5821;5822;5823;5824;5825;5826;5827;5828	5810					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.75860595703125	2	451.758352	901.502152	0.30251	0.00013666	-0.76458	-0.00034541	-0.46207	-0.00020874	451.7579860354925	71.792	1.5067	71.764	71.537	73.044	-0.027275					72	53	2	0	0	0	0.20663	2	18365	18365;18587		41.84	3.9131	1	192500			4365	1681	2219	2219	5829;5830	5829					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7581481933594	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.245	1	68.226	67.726	68.726	-0.019157								0	0	0	0.16508	1	17170	17170		49.933	3.912	1				4366	1681	2219	2219	5831	5831					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.75848388671875	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.331	1	76.3	75.8	76.8	-0.031487								0	0	0	0.33213	1	19640	19640		22.736	3.4793	1				4367	1681	2219	2219	5832	5832					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.77093505859375	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.132	1	85.119	84.619	85.619	-0.01284								0	0	0	0.33432	1	22335	22335		21.747	3.6117	1				4368	1681	2219	2219	5833	5833					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7708435058594	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.791	1	85.782	85.282	86.282	-0.0090027								0	0	0	0.34492	1	22535	22535		16.942	3.4344	1				4369	1681	2219	2219	5834	5834					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7708435058594	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.929	1	85.92	85.42	86.42	-0.0090027								0	0	0	0.34227	1	22577	22577		18.146	3.3081	1				4370	1681	2219	2219	5835	5835					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7707824707031	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.945	1	85.936	85.436	86.436	-0.0090027								0	0	0	0.34957	1	22582	22582		14.838	3.198	1				4371	1681	2219	2219	5836	5836					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2749328613281	2	451.758352	901.502152	0.28782	0.00013003	-1.1929	-0.0005389	-0.90508	-0.00040888	451.7579270014985	71.122	0.24953	71.097	70.881	71.13	-0.024872					10	8	2	0	0	0	0.30795	1	18050	18050		24.021	0	1	194540			4372	1681	2219	2219	5837	5837					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2774353027344	2	451.758352	901.502152	0.28085	0.00012688	-0.66888	-0.00030217	-0.38803	-0.0001753	451.7580301756956	73.051	0.88156	73.022	72.594	73.476	-0.029305					41	31	2	0	0	0	0.27906	1	18521	18521		41.84	11.203	1	130370			4373	1681	2219	2219	5838	5838					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2748718261719	2	451.758352	901.502152	0.13036	5.8891E-05	-0.19304	-8.7209E-05	-0.062685	-2.8318E-05	451.75830411984725	73.881	0.54374	73.851	73.424	73.967	-0.030663					25	19	2	0	0	0	0.2646	1	18891	18891		30.637	3.7529	1	214610			4374	1681	2219	2219	5839	5839					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2773742675781	2	451.758352	901.502152	0.1054	4.7614E-05	-0.14806	-6.6887E-05	-0.042662	-1.9273E-05	451.75827762238873	65.43	2.4581	65.419	64.809	67.267	-0.011337					134	89	3	0	0	0	0.25582	1	16852	16852		49.933	11.959	1	282190			4375	1681	2219	2219	5840	5840					0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	451.758352	901.502152	0.17806	8.0441E-05	-0.63035	-0.00028476	-0.45229	-0.00020432	451.75805028507506	67.655	1.1883	67.655	67.193	68.381	0	-0.00089829	1.5239E-05	NaN	37.974	62	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243040			4376	1681	2219	2219							0.047461061056765175
DAARFPII	8	Unmodified	_DAARFPII_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000460225.5_2_20:30102453-30132761:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	451.758352	901.502152	-0.043092	-1.9467E-05	0.0313	1.414E-05	-0.011791	-5.3269E-06	451.75831287062744	65.584	0.67688	65.673	65.216	65.893	0.088882	0.12733	0.00012644	NaN	49.933	43	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232980			4377	1681	2219	2219							0.047461061056765175
DAAVHQRI	8	Unmodified	_DAAVHQRI_					0	0	0		nc|ENSG00000141425|Q96P16-3|RPRD1A;ENSG00000141425|ENST00000399022|RPRD1A	nc|ENSG00000141425|Q96P16-3|RPRD1A	nc|ENSG00000141425|Q96P16-3|RPRD1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2079162597656	2	455.248683	908.482814	0.082468	3.7544E-05	-0.33617	-0.00015304	-0.2537	-0.0001155	455.2483103803145	16.982	0.57398	16.982	16.548	17.122	0					25	19	2	0	0	0	0.34039	1	1410	1410		15.847	7.937	1	57504			4378	4376	2220	2220	5841	5841					0.02491149814761684
DAAYMSKV	8	Oxidation (M)	_DAAYM(Oxidation (M))SKV_		DAAYM(1)SKV		DAAYM(42)SKV	0	0	1		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q6NXH9	ENSG00000135480|ENST00000331817|KRT7	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7100830078125	2	450.710211	899.405868	0.099354	4.478E-05	-0.0013277	-5.984E-07	0.098027	4.4182E-05	450.7100625743754	22.271	0.78397	22.17	21.888	22.672	-0.10034					56	28	3	0	0	0	0.20597	1	3070	3070		41.956	23.809	1	162600		+	4379	215	2221	2221	5842	5842		12			-0.04785829516583817
DACGYFCHTTC	11	Unmodified	_DACGYFCHTTC_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.57489013671875	3	407.47716	1219.40965	-0.035164	-1.4329E-05	-0.39541	-0.00016112	-0.43057	-0.00017545	407.4769718228405	38.092	0.45278	38.19	38.064	38.517	0.097527					27	15	2	0	0	0	0.3333	1	7906	7906		0.08335	0	1	110790			4380	6525	2222	2222	5843	5843					-0.19127851076700608
DADFRQWVQW	10	Unmodified	_DADFRQWVQW_					0	0	0			REV__ENSG00000079689|ENST00000377961|SCGN	REV__ENSG00000079689|ENST00000377961|SCGN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.77044677734375	3	450.879038	1349.61528	0.066238	2.9865E-05	-0.44083	-0.00019876	-0.37459	-0.0001689	450.87882162420993	49.216	0.55701	49.248	49.045	49.602	0.032043					39	19	3	0	0	0	0.32068	1	11283	11283		3.5871	0	1	232650	+		4381	13874	2223	2223	5844	5844					-0.04553870239101343
DADPVHRII	9	Unmodified	_DADPVHRII_					0	0	0		ENST00000313064.2_1_2:232378824-232378857:-|nuORF	ENST00000313064.2_1_2:232378824-232378857:-|nuORF	ENST00000313064.2_1_2:232378824-232378857:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.31884765625	2	518.282723	1034.55089	0.051372	2.6625E-05	0.28797	0.00014925	0.33935	0.00017588	518.2828283774753	39.592	0.48409	39.592	39.402	39.886	0					36	17	3	0	0	0	0.097101	1	8374	8374		57.249	46.425	1	297840			4382	9326	2224	2224	5845	5845					0.03499974674764417
DADPVHRII	9	Unmodified	_DADPVHRII_					0	0	0		ENST00000313064.2_1_2:232378824-232378857:-|nuORF	ENST00000313064.2_1_2:232378824-232378857:-|nuORF	ENST00000313064.2_1_2:232378824-232378857:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3187866210938	2	518.282723	1034.55089	0.2253	0.00011677	-0.16184	-8.3879E-05	0.063461	3.2891E-05	518.282521268812	39.468	0.47117	39.561	39.332	39.803	0.09267					29	16	2	0	0	0	0.099099	1	8336	8336		55.503	42.46	1	435330			4383	9326	2224	2224	5846	5846					0.03499974674764417
DADPVHRII	9	Unmodified	_DADPVHRII_					0	0	0		ENST00000313064.2_1_2:232378824-232378857:-|nuORF	ENST00000313064.2_1_2:232378824-232378857:-|nuORF	ENST00000313064.2_1_2:232378824-232378857:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3189697265625	2	518.282723	1034.55089	0.31448	0.00016299	-0.23009	-0.00011925	0.08439	4.3738E-05	518.2826070763945	39.38	0.49605	39.48	39.292	39.788	0.099407					31	17	3	0	0	0	0.11018	1	8322	8322		53.404	42.58	1	365900			4384	9326	2224	2224	5847	5847					0.03499974674764417
DADSSERII	9	Unmodified	_DADSSERII_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.2463073730469	2	503.246003	1004.47745	0.425	0.00021388	0.076831	3.8665E-05	0.50183	0.00025254	503.2459454980427	34.166	0.8859	34.166	33.839	34.725	0					64	31	3	0	0	0	0.0010968	2	6690	6690;6740		121.53	45.773	1	522640			4385	7381	2225	2225	5848;5849	5848					-0.024606185583706974
DADSSERII	9	Unmodified	_DADSSERII_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.2464904785156	2	503.246003	1004.47745	0.5858	0.0002948	-0.22505	-0.00011326	0.36074	0.00018154	503.24589240529707	34.023	0.80936	34.089	33.786	34.595	0.06636					53	28	3	0	0	0	0.001957	2	6651	6651;6696		110.55	52.831	1	601200			4386	7381	2225	2225	5850;5851	5850					-0.024606185583706974
DADSSERII	9	Unmodified	_DADSSERII_					0	0	0		ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	ENSG00000183624|ENST00000383463|HMCES	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2460632324219	2	503.246003	1004.47745	0.19562	9.8446E-05	0.21615	0.00010878	0.41177	0.00020722	503.24608471842686	33.967	0.69368	34.034	33.77	34.463	0.066704					55	24	3	0	0	0	0.0032746	2	6631	6631;6687		100.09	42.369	1	651220			4387	7381	2225	2225	5852;5853	5852					-0.024606185583706974
DADYAIKI	8	Unmodified	_DADYAIKI_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4;ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.73992919921875	2	454.739825	907.465098	0.47107	0.00021421	-0.019056	-8.6657E-06	0.45201	0.00020555	454.7396789924735	50.402	0.97031	50.402	50.138	51.108	0					92	35	4	0	0	0	0.0094041	2	11701	11655;11701		118.89	33.623	1	4130300			4388	4504	2226	2226	5854;5855	5855					0.007663897692168575
DADYAIKI	8	Unmodified	_DADYAIKI_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4;ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.7398681640625	2	454.739825	907.465098	0.80466	0.00036591	-0.3861	-0.00017558	0.41856	0.00019033	454.739521523834	50.374	0.98104	50.419	50.136	51.117	0.044891					94	35	4	0	0	0	0.013309	2	11694	11647;11694		111.29	33.068	1	3979200			4389	4504	2226	2226	5856;5857	5857					0.007663897692168575
DADYAIKI	8	Unmodified	_DADYAIKI_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4;ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.73992919921875	2	454.739825	907.465098	0.81054	0.00036859	-0.31001	-0.00014097	0.50053	0.00022761	454.7395354283575	50.425	0.95359	50.445	50.152	51.106	0.020691					92	35	4	0	0	0	0.013309	2	11696	11644;11696		111.29	26.015	1	4260400			4390	4504	2226	2226	5858;5859	5859					0.007663897692168575
DAEAKFREI	9	Unmodified	_DAEAKFREI_					0	0	0		ENST00000465725.1_1_7:108212170-108215134:+|nuORF;ENST00000491582.1_1_7:108210452-108212392:+|nuORF;ENSG00000128590|ENST00000249356|DNAJB9	ENST00000465725.1_1_7:108212170-108215134:+|nuORF	ENST00000465725.1_1_7:108212170-108215134:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7808227539062	2	539.780013	1077.54547	0.46959	0.00025347	0.17887	9.655E-05	0.64846	0.00035002	539.780152581484	34.185	1.0289	34.185	33.839	34.868	0					65	36	2	0	0	0	6.0404E-05	2	6696	6696;6737		147.24	71.48	1	2313000			4391	3376	2227	2227	5860;5861	5860					0.009802510922781948
DAEAKFREI	9	Unmodified	_DAEAKFREI_					0	0	0		ENST00000465725.1_1_7:108212170-108215134:+|nuORF;ENST00000491582.1_1_7:108210452-108212392:+|nuORF;ENSG00000128590|ENST00000249356|DNAJB9	ENST00000465725.1_1_7:108212170-108215134:+|nuORF	ENST00000465725.1_1_7:108212170-108215134:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.78076171875	2	539.780013	1077.54547	0.71551	0.00038622	-0.072774	-3.9282E-05	0.64273	0.00034693	539.7800303821683	33.985	1.0453	34.052	33.733	34.779	0.06636					67	36	2	0	0	0	0.00013073	2	6638	6638;6689		135.86	69.407	1	2173300			4392	3376	2227	2227	5862;5863	5862					0.009802510922781948
DAEAKFREI	9	Unmodified	_DAEAKFREI_					0	0	0		ENST00000465725.1_1_7:108212170-108215134:+|nuORF;ENST00000491582.1_1_7:108210452-108212392:+|nuORF;ENSG00000128590|ENST00000249356|DNAJB9	ENST00000465725.1_1_7:108212170-108215134:+|nuORF	ENST00000465725.1_1_7:108212170-108215134:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7806396484375	2	539.780013	1077.54547	0.38335	0.00020692	0.19869	0.00010725	0.58204	0.00031417	539.7801704088959	33.994	1.086	34.061	33.77	34.856	0.0667					66	37	2	0	0	0	5.3912E-07	2	6634	6634;6676		159.1	73.459	1	2672400			4393	3376	2227	2227	5864;5865	5864					0.009802510922781948
DAEHDLKI	8	Unmodified	_DAEHDLKI_					0	0	0		ENST00000594976.5_2_3:195435696-195449661:+|nuORF	ENST00000594976.5_2_3:195435696-195449661:+|nuORF	ENST00000594976.5_2_3:195435696-195449661:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.7404479980469	2	470.740357	939.46616	0.27624	0.00013004	-0.19082	-8.9827E-05	0.085421	4.0211E-05	470.74022816446234	36.534	0.52145	36.617	36.398	36.919	0.082359					32	18	2	0	0	0	0.41097	1	7466	7466		18.135	1.1927	1	298910			4394	12219	2228	2228	5866	5866					-0.005993958618546458
DAEIDLDDF	9	Unmodified	_DAEIDLDDF_					0	0	0			REV__nc|ENSG00000077254|Q8TEY7-3|USP33	REV__nc|ENSG00000077254|Q8TEY7-3|USP33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2722778320312	2	526.724569	1051.43459	0.38191	0.00020116	1.4601	0.00076908	1.842	0.00097024	526.7252593227086	45.728	0.53301	45.788	45.565	46.098	0.059837					31	18	2	0	0	0	0.25622	1	10300	10300		3.9444	3.9444	1	487700	+		4395	13840	2229	2229	5867	5867					-0.08907433406466225
DAELATRAL	9	Unmodified	_DAELATRAL_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7486572265625	2	480.261456	958.50836	-0.19326	-9.2815E-05	0.71905	0.00034533	0.5258	0.00025252	480.26177944290083	39.031	0.72011	39.031	38.79	39.51	0					41	25	2	0	0	0	0.13296	1	8260	8260		33.445	0	1	745830			4396	6750	2230	2230	5868	5868					0.027445795465382616
DAELATRAL	9	Unmodified	_DAELATRAL_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7484130859375	2	480.261456	958.50836	0.12651	6.0759E-05	0.1092	5.2443E-05	0.23571	0.0001132	480.2614479499043	38.924	0.79848	39.016	38.836	39.635	0.092674					39	28	2	0	0	0	0.064268	1	8221	8221		47.594	0	1	572370			4397	6750	2230	2230	5869	5869					0.027445795465382616
DAELATRAL	9	Unmodified	_DAELATRAL_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7876892089844	2	480.261456	958.50836	0.43164	0.0002073	0.23039	0.00011065	0.66203	0.00031795	480.26156118263333	38.929	0.56301	39.028	38.784	39.347	0.099407					32	19	2	0	0	0	0.060198	1	8168	8168		71.708	0	1	627460			4398	6750	2230	2230	5870	5870					0.027445795465382616
DAEMTTRMV	9	2 Oxidation (M)	_DAEM(Oxidation (M))TTRM(Oxidation (M))V_		DAEM(1)TTRM(1)V		DAEM(160)TTRM(160)V	0	0	2		ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2337646484375	2	543.233724	1084.45289	0.2694	0.00014635	-0.86703	-0.000471	-0.59763	-0.00032465	543.2343697228819	19.176	2.4927	19.176	18.588	21.08	0					270	89	6	0	0	0	4.984E-07	7	2028	2028;2075;2117;2162;2205;2246;2289		160.69	118.6	1	9466400			4399	8278	2231	2231	5871;5872;5873;5874;5875;5876;5877	5871		895;896			-0.08595338027748767
DAEMTTRMV	9	2 Oxidation (M)	_DAEM(Oxidation (M))TTRM(Oxidation (M))V_		DAEM(1)TTRM(1)V		DAEM(170)TTRM(170)V	0	0	2		ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2342529296875	2	543.233724	1084.45289	0.43121	0.00023425	-0.98145	-0.00053316	-0.55025	-0.00029891	543.2343180435017	19.363	2.5017	19.247	18.584	21.085	-0.11592					271	88	6	0	0	0	1.6536E-07	10	2111	2066;2111;2154;2198;2248;2292;2338;2383;2427;2488		173.69	129.83	1	10283000			4400	8278	2231	2231	5878;5879;5880;5881;5882;5883;5884;5885;5886;5887	5879		895;896			-0.08595338027748767
DAEMTTRMV	9	2 Oxidation (M)	_DAEM(Oxidation (M))TTRM(Oxidation (M))V_		DAEM(1)TTRM(1)V		DAEM(170)TTRM(170)V	0	0	2		ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.234375	2	543.233724	1084.45289	0.44022	0.00023914	-1.0206	-0.00055443	-0.5804	-0.00031529	543.2342890146234	19.262	2.5706	19.207	18.573	21.143	-0.055693					284	91	6	0	0	0	1.6536E-07	7	2093	2046;2093;2137;2182;2233;2278;2319		173.69	131.59	1	10220000			4401	8278	2231	2231	5888;5889;5890;5891;5892;5893;5894	5889		895;896			-0.08595338027748767
DAENAMRYI	9	Oxidation (M)	_DAENAM(Oxidation (M))RYI_		DAENAM(1)RYI		DAENAM(200)RYI	0	0	1		nc|ENSG00000114503|P52298-2|NCBP2;ENSG00000114503|ENST00000321256|NCBP2;ENST00000479647.1_1_3:196664263-196668636:-|nuORF;ENST00000468923.5_1_3:196664263-196669374:-|nuORF	nc|ENSG00000114503|P52298-2|NCBP2	nc|ENSG00000114503|P52298-2|NCBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.74755859375	2	549.747856	1097.48116	0.55713	0.00030628	-0.88568	-0.0004869	-0.32854	-0.00018062	549.7481093142668	36.735	2.5364	36.735	36.229	38.765	0					260	90	6	0	0	0	5.4465E-12	6	7422	7370;7422;7471;7515;7559;7610		201.57	149.3	1	33477000			4402	2571	2232	2232	5895;5896;5897;5898;5899;5900	5896		321			-0.06368272056170099
DAENAMRYI	9	Oxidation (M)	_DAENAM(Oxidation (M))RYI_		DAENAM(1)RYI		DAENAM(200)RYI	0	0	1		nc|ENSG00000114503|P52298-2|NCBP2;ENSG00000114503|ENST00000321256|NCBP2;ENST00000479647.1_1_3:196664263-196668636:-|nuORF;ENST00000468923.5_1_3:196664263-196669374:-|nuORF	nc|ENSG00000114503|P52298-2|NCBP2	nc|ENSG00000114503|P52298-2|NCBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7476806640625	2	549.747856	1097.48116	0.59837	0.00032895	-0.94128	-0.00051746	-0.34291	-0.00018851	549.7480922823784	36.597	2.9517	36.685	36.148	39.1	0.08741					275	107	6	0	0	0	5.4465E-12	6	7381	7332;7381;7431;7471;7513;7554		201.57	145.39	1	34503000			4403	2571	2232	2232	5901;5902;5903;5904;5905;5906	5902		321			-0.06368272056170099
DAENAMRYI	9	Oxidation (M)	_DAENAM(Oxidation (M))RYI_		DAENAM(1)RYI		DAENAM(190)RYI	0	0	1		nc|ENSG00000114503|P52298-2|NCBP2;ENSG00000114503|ENST00000321256|NCBP2;ENST00000479647.1_1_3:196664263-196668636:-|nuORF;ENST00000468923.5_1_3:196664263-196669374:-|nuORF	nc|ENSG00000114503|P52298-2|NCBP2	nc|ENSG00000114503|P52298-2|NCBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7474975585938	2	549.747856	1097.48116	0.84887	0.00046667	-1.1847	-0.00065127	-0.3358	-0.00018461	549.7479527979169	36.648	2.8275	36.741	36.119	38.947	0.093018					270	102	6	0	0	0	4.8913E-11	6	7362	7319;7362;7412;7457;7505;7546		187.3	135.03	1	34018000			4404	2571	2232	2232	5907;5908;5909;5910;5911;5912	5908		321			-0.06368272056170099
DAEYALLI	8	Unmodified	_DAEYALLI_					0	0	0		nc|ENSG00000131408|P55055-2|NR1H2;ENSG00000131408|ENST00000253727|NR1H2	nc|ENSG00000131408|P55055-2|NR1H2	nc|ENSG00000131408|P55055-2|NR1H2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.24188232421875	2	454.242201	906.469849	0.080551	3.659E-05	-0.66125	-0.00030037	-0.5807	-0.00026378	454.2417946312915	80.354	0.44331	80.419	80.185	80.628	0.065102					27	16	2	0	0	0	0.2705	1	20879	20879		34.187	7.8461	1	159460			4405	3562	2233	2233	5913	5913					0.012872739120098231
DAFANFANF	9	Unmodified	_DAFANFANF_					0	0	0		nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF	nc|ENSG00000113282|Q14677-2|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7274475097656	2	508.727249	1015.43995	0.29598	0.00015057	-0.23855	-0.00012135	0.057432	2.9217E-05	508.72716779828556	80.866	0.86465	80.866	80.569	81.434	0					101	40	4	0	0	0	9.2305E-05	4	21033	20992;21033;21077;21125		142.08	74.736	1	1122300			4406	2488	2234	2234	5914;5915;5916;5917	5915					-0.06715665033334517
DAFANFANF	9	Unmodified	_DAFANFANF_					0	0	0		nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF	nc|ENSG00000113282|Q14677-2|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.727294921875	2	508.727249	1015.43995	0.083511	4.2484E-05	0.051016	2.5953E-05	0.13453	6.8438E-05	508.7272790994609	80.765	0.77851	80.83	80.546	81.325	0.065102					83	35	4	0	0	0	0.00045155	4	20994	20951;20994;21038;21086		129.77	76.197	1	1055500			4407	2488	2234	2234	5918;5919;5920;5921	5919					-0.06715665033334517
DAFANFANF	9	Unmodified	_DAFANFANF_					0	0	0		nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF	nc|ENSG00000113282|Q14677-2|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.72723388671875	2	508.727249	1015.43995	0.27771	0.00014128	-0.2119	-0.0001078	0.065813	3.3481E-05	508.72714021501093	80.94	0.6668	80.913	80.625	81.291	-0.026825					83	27	4	0	0	0	1.2283E-05	4	21038	20994;21038;21081;21132		155.03	96.347	1	1352200			4408	2488	2234	2234	5922;5923;5924;5925	5923					-0.06715665033334517
DAFEEKANI	9	Unmodified	_DAFEEKANI_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;ENST00000513111.1_1_3:123366069-123368027:-|nuORF;nc|ENSG00000065534|Q15746-9|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.751220703125	2	518.750921	1035.48729	0.38154	0.00019792	-0.34106	-0.00017693	0.040477	2.0997E-05	518.7507207536502	40.1	0.88448	40.1	39.777	40.662	0					66	31	4	0	0	0	0.0032746	2	8501	8501;8550		100.09	27.123	1	1092700			4409	819	2235	2235	5926;5927	5926					-0.029034305530103666
DAFEEKANI	9	Unmodified	_DAFEEKANI_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;ENST00000513111.1_1_3:123366069-123368027:-|nuORF;nc|ENSG00000065534|Q15746-9|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7510986328125	2	518.750921	1035.48729	0.50247	0.00026066	-0.37879	-0.0001965	0.12368	6.4158E-05	518.7507254567043	39.893	0.69973	39.986	39.72	40.42	0.09267					49	24	3	0	0	0	0.00010125	1	8452	8452		140.63	47.98	1	1230700			4410	819	2235	2235	5928	5928					-0.029034305530103666
DAFEEKANI	9	Unmodified	_DAFEEKANI_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;ENST00000513111.1_1_3:123366069-123368027:-|nuORF;nc|ENSG00000065534|Q15746-9|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7507934570312	2	518.750921	1035.48729	0.35611	0.00018473	-0.28617	-0.00014845	0.069933	3.6278E-05	518.7507434025085	39.841	0.69232	39.941	39.705	40.397	0.099407					65	24	4	0	0	0	0.0032746	2	8420	8420;8475		100.09	36.13	1	1134800			4411	819	2235	2235	5929;5930	5929					-0.029034305530103666
DAFEFHEAF	9	Unmodified	_DAFEFHEAF_					0	0	0		nc|ENSG00000138029|P55084-2|HADHB;ENSG00000138029|ENST00000317799|HADHB	nc|ENSG00000138029|P55084-2|HADHB	nc|ENSG00000138029|P55084-2|HADHB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2955932617188	2	556.737814	1111.46108	0.35571	0.00019803	-1.5305	-0.00085209	-1.1748	-0.00065406	556.7369921158801	71.678	0.4089	71.734	71.568	71.977	0.056572					25	14	2	0	0	0	0.25417	1	18177	18177		8.5933	0	1	278260			4412	4105	2236	2236	5931	5931					-0.090196997244675
DAFEVLGEI	9	Unmodified	_DAFEVLGEI_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.27642822265625	2	496.75039	991.486227	0.59577	0.00029595	-0.32629	-0.00016208	0.26948	0.00013387	496.75027426976635	85.699	0.48611	85.699	85.527	86.013	0					27	17	2	0	0	0	0.13898	1	22555	22555		43.858	18.459	1	226000			4413	7453	2237	2237	5932	5932					-0.009856449219000751
DAFEVLGEI	9	Unmodified	_DAFEVLGEI_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2765808105469	2	496.75039	991.486227	0.54738	0.00027191	-0.26773	-0.00013299	0.27965	0.00013892	496.7502673713329	85.597	0.5328	85.682	85.486	86.019	0.084251					30	19	2	0	0	0	0.15943	1	22480	22480		39.95	13.608	1	244110			4414	7453	2237	2237	5933	5933					-0.009856449219000751
DAFEVLGEI	9	Unmodified	_DAFEVLGEI_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2765808105469	2	496.75039	991.486227	0.55234	0.00027438	-0.11689	-5.8067E-05	0.43545	0.00021631	496.7503037220015	85.745	0.5074	85.736	85.455	85.962	-0.0090027					31	18	2	0	0	0	0.20167	1	22501	22501		29.082	4.4077	1	184410			4415	7453	2237	2237	5934	5934					-0.009856449219000751
DAFFSDTQI	9	Unmodified	_DAFFSDTQI_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;ENST00000561079.1_1_15:51755569-51758496:-|nuORF	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2379150390625	2	522.237647	1042.46074	0.49542	0.00025873	0.28981	0.00015135	0.78523	0.00041008	522.2376332574147	71.19	0.64941	71.19	70.933	71.582	0					53	22	3	0	0	0	0.0013924	1	18065	18065		117.76	81.634	1	1254700			4416	1867	2238	2238	5935	5935					-0.05879119444330172
DAFFSDTQI	9	Unmodified	_DAFFSDTQI_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;ENST00000561079.1_1_15:51755569-51758496:-|nuORF	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2384033203125	2	522.237647	1042.46074	0.40289	0.00021041	0.10413	5.4382E-05	0.50703	0.00026479	522.2376901398603	71.137	0.61789	71.198	70.987	71.605	0.060776					37	21	2	0	0	0	0.0023895	1	18044	18044		107.1	74.983	1	1260900			4417	1867	2238	2238	5936	5936					-0.05879119444330172
DAFFSDTQI	9	Unmodified	_DAFFSDTQI_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;ENST00000561079.1_1_15:51755569-51758496:-|nuORF	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2379760742188	2	522.237647	1042.46074	0.51803	0.00027054	-0.025895	-1.3524E-05	0.49214	0.00025701	522.2376443152751	71.221	0.63374	71.196	70.999	71.632	-0.024864					51	22	3	0	0	0	0.003673	1	18059	18059		96.936	72.262	1	1202200			4418	1867	2238	2238	5937	5937					-0.05879119444330172
DAFGHKSNI	9	Unmodified	_DAFGHKSNI_					0	0	0		ENST00000512687.5_1_5:68530748-68551520:+|nuORF;ENSG00000134058|ENST00000256443|CDK7	ENST00000512687.5_1_5:68530748-68551520:+|nuORF	ENST00000512687.5_1_5:68530748-68551520:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7931823730469	2	494.745973	987.477394	0.19479	9.6371E-05	-0.10166	-5.0296E-05	0.093128	4.6075E-05	494.74589787178786	22.684	0.5417	22.684	22.505	23.047	0					29	18	2	0	0	0	0.25346	1	3236	3236		10.8	2.644	1	83630			4419	3752	2239	2239	5938	5938					-0.016845737677158468
DAFGHKSNI	9	Unmodified	_DAFGHKSNI_					0	0	0		ENST00000512687.5_1_5:68530748-68551520:+|nuORF;ENSG00000134058|ENST00000256443|CDK7	ENST00000512687.5_1_5:68530748-68551520:+|nuORF	ENST00000512687.5_1_5:68530748-68551520:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7929992675781	2	494.745973	987.477394	0.20175	9.9815E-05	0.25971	0.00012849	0.46146	0.00022831	494.7460497078887	22.802	0.90746	22.714	22.138	23.046	-0.087608					42	32	2	0	0	0	0.25949	1	3271	3271		4.897	0	1	68476			4420	3752	2239	2239	5939	5939					-0.016845737677158468
DAFGHKSNI	9	Unmodified	_DAFGHKSNI_					0	0	0		ENST00000512687.5_1_5:68530748-68551520:+|nuORF;ENSG00000134058|ENST00000256443|CDK7	ENST00000512687.5_1_5:68530748-68551520:+|nuORF	ENST00000512687.5_1_5:68530748-68551520:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.79278564453125	2	494.745973	987.477394	0.21578	0.00010675	0.30923	0.00015299	0.52501	0.00025975	494.74596256042094	22.85	0.79506	22.805	22.209	23.004	-0.044867					39	27	2	0	0	0	0.25346	1	3263	3263		10.8	10.8	1	73973			4421	3752	2239	2239	5940	5940					-0.016845737677158468
DAFHEKYTI	9	Unmodified	_DAFHEKYTI_					0	0	0		ENSG00000135775|ENST00000366669|COG2;nc|ENSG00000135775|Q14746-2|COG2;ENST00000494371.5_1_1:230807261-230814859:+|nuORF	ENSG00000135775|ENST00000366669|COG2	ENSG00000135775|ENST00000366669|COG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.274658203125	2	562.274564	1122.53457	0.11102	6.2421E-05	0.25978	0.00014607	0.3708	0.00020849	562.2745986394078	41.272	0.46087	41.272	41.01	41.471	0					44	16	3	0	0	0	0.0031966	2	8874	8874;8932		100.71	70.072	1	1012400			4422	3903	2240	2240	5941;5942	5941					-0.021791512820072967
DAFHEKYTI	9	Unmodified	_DAFHEKYTI_					0	0	0		ENSG00000135775|ENST00000366669|COG2;nc|ENSG00000135775|Q14746-2|COG2;ENST00000494371.5_1_1:230807261-230814859:+|nuORF	ENSG00000135775|ENST00000366669|COG2	ENSG00000135775|ENST00000366669|COG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.274658203125	2	562.274564	1122.53457	0.38293	0.00021531	0.28447	0.00015995	0.6674	0.00037526	562.2746850439645	40.936	0.63224	41.028	40.772	41.404	0.091629					57	23	3	0	0	0	0.0031966	1	8788	8788		100.71	70.072	1	1038100			4423	3903	2240	2240	5943	5943					-0.021791512820072967
DAFHEKYTI	9	Unmodified	_DAFHEKYTI_					0	0	0		ENSG00000135775|ENST00000366669|COG2;nc|ENSG00000135775|Q14746-2|COG2;ENST00000494371.5_1_1:230807261-230814859:+|nuORF	ENSG00000135775|ENST00000366669|COG2	ENSG00000135775|ENST00000366669|COG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.2748413085938	2	562.274564	1122.53457	0.056944	3.2018E-05	0.41674	0.00023433	0.47369	0.00026634	562.2747762130366	40.882	0.70609	40.98	40.693	41.4	0.098717					55	25	3	0	0	0	0.0083763	2	8757	8757;8806		81.915	51.279	1	1169200			4424	3903	2240	2240	5944;5945	5944					-0.021791512820072967
DAFISVQV	8	Unmodified	_DAFISVQV_					0	0	0		ENSG00000134508|ENST00000256925|CABLES1	ENSG00000134508|ENST00000256925|CABLES1	ENSG00000134508|ENST00000256925|CABLES1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.7344055175781	2	439.734543	877.454533	-0.01354	-5.9539E-06	-0.14253	-6.2674E-05	-0.15607	-6.8628E-05	439.73447295003604	69.748	0.51292	69.748	69.59	70.103	0					44	18	3	0	0	0	0.13814	1	17656	17656		53.833	3.8998	1	362070			4425	3791	2241	2241	5946	5946					0.010904071148161165
DAFISVQV	8	Unmodified	_DAFISVQV_					0	0	0		ENSG00000134508|ENST00000256925|CABLES1	ENSG00000134508|ENST00000256925|CABLES1	ENSG00000134508|ENST00000256925|CABLES1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.73443603515625	2	439.734543	877.454533	-0.045467	-1.9993E-05	-0.074696	-3.2846E-05	-0.12016	-5.284E-05	439.73447706363567	69.706	0.69395	69.772	69.579	70.273	0.066048					41	24	2	0	0	0	0.13814	1	17632	17632		53.833	3.8998	1	329090			4426	3791	2241	2241	5947	5947					0.010904071148161165
DAFISVQV	8	Unmodified	_DAFISVQV_					0	0	0		ENSG00000134508|ENST00000256925|CABLES1	ENSG00000134508|ENST00000256925|CABLES1	ENSG00000134508|ENST00000256925|CABLES1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.2554016113281	2	439.734543	877.454533	0.061877	2.721E-05	-0.18143	-7.9782E-05	-0.11956	-5.2573E-05	439.7345247286427	69.821	0.67293	69.799	69.515	70.188	-0.022087					46	24	2	0	0	0	0.24708	1	17647	17647		53.833	9.9745	1	283630			4427	3791	2241	2241	5948	5948					0.010904071148161165
DAFIVRFV	8	Unmodified	_DAFIVRFV_					0	0	0		IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.2314758300781	2	483.774003	965.533452	0.37726	0.00018251	-0.45634	-0.00022076	-0.079078	-3.8256E-05	483.7736098695372	71.404	0.27071	71.376	71.236	71.506	-0.027275					13	9	2	0	0	0	0.31302	1	18134	18134		22.736	13.389	1	134640			4428	7927	2242	2242	5949	5949					0.04930679139761196
DAFKIATL	8	Unmodified	_DAFKIATL_					0	0	0		ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.75274658203125	2	439.752736	877.490919	0.12088	5.3158E-05	0.026991	1.1869E-05	0.14787	6.5027E-05	439.7526614264084	58.031	1.7522	58.031	57.693	59.445	0					147	61	4	0	0	0	0.021688	1	14203	14203		99.755	17.865	1	6342000			4429	3476	2243	2243	5950	5950					0.04727284011528354
DAFKIATL	8	Unmodified	_DAFKIATL_					0	0	0		ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.75274658203125	2	439.752736	877.490919	0.11462	5.0403E-05	-0.040868	-1.7972E-05	0.073747	3.2431E-05	439.7526332039135	57.9	1.6024	57.986	57.63	59.233	0.085621					147	57	5	0	0	0	0.013624	3	14098	14098;14145;14189		110.67	18.183	1	6695700			4430	3476	2243	2243	5951;5952;5953	5951					0.04727284011528354
DAFKIATL	8	Unmodified	_DAFKIATL_					0	0	0		ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.7527770996094	2	439.752736	877.490919	0.32202	0.00014161	-0.14536	-6.392E-05	0.17667	7.7691E-05	439.7525793175236	58.084	1.5046	58.067	57.741	59.245	-0.0172					135	54	4	0	0	0	0.0077181	1	14171	14171		122.18	29.688	1	6368600			4431	3476	2243	2243	5954	5954					0.04727284011528354
DAFKIWVI	8	Unmodified	_DAFKIWVI_					0	0	0		ENST00000524817.5_1_11:9685687-9762009:+|nuORF;ENSG00000133789|ENST00000318950|SWAP70	ENST00000524817.5_1_11:9685687-9762009:+|nuORF	ENST00000524817.5_1_11:9685687-9762009:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2843933105469	2	496.284203	990.553853	0.37851	0.00018785	-0.12986	-6.4448E-05	0.24865	0.0001234	496.2840947477554	80.829	1.2279	80.829	80.569	81.797	0					127	55	4	0	0	0	0.056926	1	21032	21032		74.929	32.834	1	1753500			4432	3728	2244	2244	5955	5955					0.058198497995590515
DAFKIWVI	8	Unmodified	_DAFKIWVI_					0	0	0		ENST00000524817.5_1_11:9685687-9762009:+|nuORF;ENSG00000133789|ENST00000318950|SWAP70	ENST00000524817.5_1_11:9685687-9762009:+|nuORF	ENST00000524817.5_1_11:9685687-9762009:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2843017578125	2	496.284203	990.553853	0.21088	0.00010466	0.034067	1.6907E-05	0.24495	0.00012157	496.2841766886003	80.749	0.87552	80.814	80.52	81.396	0.065094					98	40	3	0	0	0	0.056926	2	20965	20965;21013		74.929	34.972	1	1640400			4433	3728	2244	2244	5956;5957	5956					0.058198497995590515
DAFKIWVI	8	Unmodified	_DAFKIWVI_					0	0	0		ENST00000524817.5_1_11:9685687-9762009:+|nuORF;ENSG00000133789|ENST00000318950|SWAP70	ENST00000524817.5_1_11:9685687-9762009:+|nuORF	ENST00000524817.5_1_11:9685687-9762009:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2844543457031	2	496.284203	990.553853	0.36182	0.00017957	-0.24418	-0.00012118	0.11764	5.8385E-05	496.2840759586506	80.895	0.77376	80.868	80.597	81.371	-0.026825					79	31	3	0	0	0	0.077335	1	21051	21051		65.235	31.133	1	1183900			4434	3728	2244	2244	5958	5958					0.058198497995590515
DAFKKSQLN	9	Unmodified	_DAFKKSQLN_					0	0	0			REV__nc|ENSG00000138346|P51530-2|DNA2	REV__nc|ENSG00000138346|P51530-2|DNA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3123168945312	2	525.782556	1049.55056	0.13709	7.2077E-05	0.26191	0.00013771	0.39899	0.00020978	525.7825667526304	13.744	0.3583	13.678	13.444	13.802	-0.066068					30	12	3	0	0	0	0.25612	1	501	501		8.1555	0.8663	1	132190	+		4435	23010	2245	2245	5959	5959					0.027765549549030766
DAFKTLFV	8	Unmodified	_DAFKTLFV_					0	0	0		nc|ENSG00000104852|P08621-3|SNRNP70;nc|ENSG00000104852|P08621-2|SNRNP70;ENSG00000104852|ENST00000598441|SNRNP70	nc|ENSG00000104852|P08621-3|SNRNP70	nc|ENSG00000104852|P08621-3|SNRNP70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.76080322265625	2	470.760561	939.506569	0.27753	0.00013065	0.054676	2.5739E-05	0.3322	0.00015639	470.76057449435956	66.136	1.6813	66.136	65.768	67.45	0					166	59	5	0	0	0	0.021688	6	16532	16484;16532;16581;16632;16690;16741		99.755	38.398	1	9321100			4436	1923	2246	2246	5960;5961;5962;5963;5964;5965	5961					0.03439570528564673
DAFKTLFV	8	Unmodified	_DAFKTLFV_					0	0	0		nc|ENSG00000104852|P08621-3|SNRNP70;nc|ENSG00000104852|P08621-2|SNRNP70;ENSG00000104852|ENST00000598441|SNRNP70	nc|ENSG00000104852|P08621-3|SNRNP70	nc|ENSG00000104852|P08621-3|SNRNP70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.7607116699219	2	470.760561	939.506569	0.3698	0.00017409	-0.037211	-1.7518E-05	0.33259	0.00015657	470.7605035933772	65.985	1.6331	66.069	65.726	67.36	0.083832					156	58	5	0	0	0	0.021688	4	16492	16439;16492;16534;16579		99.755	38.398	1	8581600			4437	1923	2246	2246	5966;5967;5968;5969	5967					0.03439570528564673
DAFKTLFV	8	Unmodified	_DAFKTLFV_					0	0	0		nc|ENSG00000104852|P08621-3|SNRNP70;nc|ENSG00000104852|P08621-2|SNRNP70;ENSG00000104852|ENST00000598441|SNRNP70	nc|ENSG00000104852|P08621-3|SNRNP70	nc|ENSG00000104852|P08621-3|SNRNP70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.7606506347656	2	470.760561	939.506569	0.27914	0.00013141	0.026751	1.2594E-05	0.30589	0.000144	470.7605366783131	66.129	1.4927	66.116	65.772	67.265	-0.013596					150	53	4	0	0	0	0.021688	3	16514	16514;16564;16613		99.755	31.675	1	8673600			4438	1923	2246	2246	5970;5971;5972	5970					0.03439570528564673
DAFLAQHTM	9	Oxidation (M)	_DAFLAQHTM(Oxidation (M))_		DAFLAQHTM(1)		DAFLAQHTM(46)	0	0	1		ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8189086914062	2	525.239667	1048.46478	-0.6671	-0.00035039	-1.5315	-0.0008044	-2.1986	-0.0011548	525.2387909601727	34.605	0.42135	34.605	34.418	34.839	0					25	14	2	0	0	0	0.11755	1	6853	6853		46.022	24.485	1	285580			4439	2326	2247	2247	5973	5973		286			-0.057513532222856156
DAFLAQHTM	9	Oxidation (M)	_DAFLAQHTM(Oxidation (M))_		DAFLAQHTM(1)		DAFLAQHTM(69)	0	0	1		ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8175048828125	2	525.239667	1048.46478	-0.92231	-0.00048443	-1.3559	-0.00071215	-2.2782	-0.0011966	525.2385994327757	34.594	0.63697	34.669	34.326	34.963	0.075306					39	22	3	0	0	0	0.044909	1	6852	6852		69.338	34.936	1	276460			4440	2326	2247	2247	5974	5974		286			-0.057513532222856156
DAFLAQHTM	9	Oxidation (M)	_DAFLAQHTM(Oxidation (M))_		DAFLAQHTM(1)		DAFLAQHTM(77)	0	0	1		ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.817626953125	2	525.239667	1048.46478	-0.10655	-5.5966E-05	-2.4729	-0.0012989	-2.5795	-0.0013549	525.2380669563449	34.511	0.47603	34.588	34.417	34.893	0.077377					38	16	3	0	0	0	0.044188	1	6830	6830		76.825	32.966	1	271080			4441	2326	2247	2247	5975	5975		286			-0.057513532222856156
DAFLEAAKKI	10	Unmodified	_DAFLEAAKKI_					0	0	0		ENSG00000119396|ENST00000373840|RAB14	ENSG00000119396|ENST00000373840|RAB14	ENSG00000119396|ENST00000373840|RAB14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.2890625	2	553.316232	1104.61791	0.7525	0.00041637	-1.0581	-0.00058548	-0.30563	-0.00016911	553.3155504558033	48.337	0.31563	48.385	48.258	48.573	0.047523					19	11	2	0	0	0	0.27086	1	11071	11071		26.021	12.513	1	229380			4442	2873	2248	2248	5976	5976					0.06978585165848017
DAFLEAAKKI	10	Unmodified	_DAFLEAAKKI_					0	0	0		ENSG00000119396|ENST00000373840|RAB14	ENSG00000119396|ENST00000373840|RAB14	ENSG00000119396|ENST00000373840|RAB14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.2889404296875	2	553.316232	1104.61791	0.55243	0.00030567	-0.44635	-0.00024697	0.10608	5.8696E-05	553.3158849400065	48.261	0.31716	48.304	48.191	48.509	0.043324					20	11	2	0	0	0	0.31207	1	11024	11024		17.443	14.865	1	217940			4443	2873	2248	2248	5977	5977					0.06978585165848017
DAFLFNEL	8	Unmodified	_DAFLFNEL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7401123046875	2	484.739825	967.465098	0.39532	0.00019163	-0.54385	-0.00026362	-0.14852	-7.1994E-05	484.73983449652115	87.284	0.94977	87.284	86.938	87.888	0					104	43	4	0	0	0	0.0017594	3	22968	22968;23012;23056		134.3	69.061	1	607380			4444	7351	2249	2249	5978;5979;5980	5978					-0.01993610230761078
DAFLFNEL	8	Unmodified	_DAFLFNEL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.73992919921875	2	484.739825	967.465098	0.29957	0.00014521	-1.5935	-0.00077241	-1.2939	-0.00062719	484.7398450262413	87.124	2.0484	87.211	86.022	88.071	0.087097					138	92	2	0	0	0	1.3105E-09	3	22959	22909;22959;23003		189.78	104.42	1	954520			4445	7351	2249	2249	5981;5982;5983	5982					-0.01993610230761078
DAFLFNEL	8	Unmodified	_DAFLFNEL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7400207519531	2	484.739825	967.465098	0.39714	0.00019251	-1.5814	-0.00076655	-1.1842	-0.00057404	484.73981159335375	87.209	2.0055	87.204	86.965	88.971	-0.0056229					140	96	2	0	0	0	1.3105E-09	3	22986	22945;22986;23030		189.78	93.491	1	954750			4446	7351	2249	2249	5984;5985;5986	5985					-0.01993610230761078
DAFLLKHV	8	Unmodified	_DAFLLKHV_					0	0	0		ENSG00000166173|ENST00000299213|LARP6	ENSG00000166173|ENST00000299213|LARP6	ENSG00000166173|ENST00000299213|LARP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.7902526855469	2	471.774003	941.533452	0.11219	5.2927E-05	0.46469	0.00021923	0.57688	0.00027216	471.774332989684	44.216	0.3973	44.216	44.065	44.462	0					26	14	2	0	0	0	0.18275	1	9787	9787		46.021	15.384	1	408490			4447	6040	2250	2250	5987	5987					0.06034679139747823
DAFLLKHV	8	Unmodified	_DAFLLKHV_					0	0	0		ENSG00000166173|ENST00000299213|LARP6	ENSG00000166173|ENST00000299213|LARP6	ENSG00000166173|ENST00000299213|LARP6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.79022216796875	2	471.774003	941.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.073	1	44.15	43.65	44.65	0.077515								0	0	0	0.18858	1	9735	9735		46.021	9.9768	1				4448	6040	2250	2250	5988	5988					0.06034679139747823
DAFLLKHV	8	Unmodified	_DAFLLKHV_					0	0	0		ENSG00000166173|ENST00000299213|LARP6	ENSG00000166173|ENST00000299213|LARP6	ENSG00000166173|ENST00000299213|LARP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.79010009765625	2	471.774003	941.533452	0.19412	9.1582E-05	0.49856	0.00023521	0.69268	0.00032679	471.77409522533486	44.02	0.45361	44.104	43.944	44.398	0.083992					24	16	2	0	0	0	0.14707	1	9725	9725		52.268	21.632	1	592850			4449	6040	2250	2250	5989	5989					0.06034679139747823
DAFLLSTLF	9	Unmodified	_DAFLLSTLF_					0	0	0		nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-2|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF	nc|ENSG00000166473|Q7Z442|PKD1L2	nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7685546875	2	513.778951	1025.54335	0.16529	8.4921E-05	-0.93713	-0.00048148	-0.77184	-0.00039655	513.7783808236496	73.954	0.74209	73.954	73.632	74.374	0					49	24	3	0	0	0	0.21303	1	18957	18957		21.747	1.293	1	907730			4450	12817	2251	2251	5990	5990					0.031598223544506254
DAFLNKNSI	9	Unmodified	_DAFLNKNSI_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2694396972656	2	511.269281	1020.52401	0.42519	0.00021739	-0.22782	-0.00011648	0.19737	0.00010091	511.26917804495747	45.126	1.0623	45.126	44.684	45.746	0					131	38	5	0	0	0	5.4465E-12	3	10072	10026;10072;10116		201.57	109.08	1	7544000			4451	5917	2252	2252	5991;5992;5993	5992					0.0145686606357458
DAFLNKNSI	9	Unmodified	_DAFLNKNSI_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2693176269531	2	511.269281	1020.52401	0.35236	0.00018015	-0.2391	-0.00012225	0.11326	5.7906E-05	511.2691773504909	44.91	0.97732	44.978	44.651	45.628	0.068573					115	34	5	0	0	0	7.3424E-17	3	10006	9956;10006;10146		218.2	122.09	1	8280100			4452	5917	2252	2252	5994;5995;5996	5995					0.0145686606357458
DAFLNKNSI	9	Unmodified	_DAFLNKNSI_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2693786621094	2	511.269281	1020.52401	0.40182	0.00020544	-0.23867	-0.00012203	0.16314	8.3411E-05	511.26918689015116	44.909	0.90825	44.984	44.697	45.605	0.07505					121	33	5	0	0	0	5.6772E-17	2	9999	9950;9999		220.1	112.91	1	7711300			4453	5917	2252	2252	5997;5998	5998					0.0145686606357458
DAFNTTFI	8	Unmodified	_DAFNTTFI_					0	0	0		ENST00000495146.5_1_2:26257477-26350043:+|nuORF;ENSG00000084733|ENST00000264710|RAB10;ENSG00000166128|ENST00000321437|RAB8B	ENST00000495146.5_1_2:26257477-26350043:+|nuORF	ENST00000495146.5_1_2:26257477-26350043:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.724365234375	2	464.724175	927.433798	-0.10241	-4.7592E-05	0.29648	0.00013778	0.19408	9.0192E-05	464.72430344038645	73.279	1.4952	73.279	72.534	74.029	0					138	53	4	0	0	0	2.1258E-09	3	18735	18692;18735;18784		181.33	99.714	1	5548200			4454	1249	2253	2253	5999;6000;6001	6000					-0.03282183264855121
DAFNTTFI	8	Unmodified	_DAFNTTFI_					0	0	0		ENST00000495146.5_1_2:26257477-26350043:+|nuORF;ENSG00000084733|ENST00000264710|RAB10;ENSG00000166128|ENST00000321437|RAB8B	ENST00000495146.5_1_2:26257477-26350043:+|nuORF	ENST00000495146.5_1_2:26257477-26350043:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7242736816406	2	464.724175	927.433798	0.22969	0.00010674	-0.045318	-2.106E-05	0.18437	8.5681E-05	464.72412093705606	73.355	1.2018	73.326	72.738	73.939	-0.029305					127	43	4	0	0	0	2.1258E-09	3	18732	18684;18732;18772		181.33	99.714	1	5357000			4455	1249	2253	2253	6002;6003;6004	6003					-0.03282183264855121
DAFNTTFI	8	Unmodified	_DAFNTTFI_					0	0	0		ENST00000495146.5_1_2:26257477-26350043:+|nuORF;ENSG00000084733|ENST00000264710|RAB10;ENSG00000166128|ENST00000321437|RAB8B	ENST00000495146.5_1_2:26257477-26350043:+|nuORF	ENST00000495146.5_1_2:26257477-26350043:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	464.724175	927.433798	-0.10863	-5.0481E-05	0.30716	0.00014274	0.19853	9.2262E-05	464.7242925788025	73.246	1.0038	73.3	72.924	73.927	0.053833	-0.0018939	0.00013035	NaN	181.33	116	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4943900			4456	1249	2253	2253							-0.03282183264855121
DAFPDQVAI	9	Unmodified	_DAFPDQVAI_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2426452636719	2	488.242732	974.470912	0.29262	0.00014287	-0.1955	-9.5451E-05	0.097123	4.742E-05	488.2424398934242	68.304	0.90191	68.304	67.97	68.872	0					90	33	4	0	0	0	0.0048951	1	17162	17162		87.258	31.081	1	1427500			4457	1603	2254	2254	6005	6005					-0.01734511719087095
DAFPDQVAI	9	Unmodified	_DAFPDQVAI_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.242431640625	2	488.242732	974.470912	0.25972	0.00012681	-0.19644	-9.5911E-05	0.063281	3.0896E-05	488.24243142120486	68.206	0.76001	68.278	67.969	68.729	0.071938					81	27	4	0	0	0	0.0054984	2	17122	17122;17180		86.332	30.155	1	1438500			4458	1603	2254	2254	6006;6007	6006					-0.01734511719087095
DAFPDQVAI	9	Unmodified	_DAFPDQVAI_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.24273681640625	2	488.242732	974.470912	0.37674	0.00018394	-0.61585	-0.00030068	-0.23911	-0.00011674	488.2423528171932	68.31	0.90475	68.291	67.938	68.843	-0.019157					74	32	3	0	0	0	0.026579	2	17139	17139;17197		61.602	11.669	1	1692300			4459	1603	2254	2254	6008;6009	6008					-0.01734511719087095
DAFPPPRV	8	Unmodified	_DAFPPPRV_					0	0	0		nc|ENSG00000138030|P50053-2|KHK;ENSG00000138030|ENST00000260598|KHK	nc|ENSG00000138030|P50053-2|KHK	nc|ENSG00000138030|P50053-2|KHK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.273681640625	2	449.742702	897.470852	0.093551	4.2074E-05	0.22053	9.9181E-05	0.31408	0.00014126	449.74266166777187	42.605	0.96408	42.697	42.26	43.224	0.091362					59	34	2	0	0	0	0.33993	1	9263	9263		11.64	2.2929	1	350730			4460	4106	2255	2255	6010	6010					0.018015330715684286
DAFPQLPEL	9	Unmodified	_DAFPQLPEL_					0	0	0		ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant;ENSG00000175213|ENST00000311764|ZNF408	ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant	ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2659301757812	2	515.266207	1028.51786	0.55663	0.00028681	0.072809	3.7516E-05	0.62944	0.00032433	515.2661463247873	84.744	0.65537	84.744	84.47	85.125	0					53	24	3	0	0	0	0.16685	1	22212	22212		28.495	9.2375	1	277340			4461	6846	2256	2256	6011	6011					0.004743478320278882
DAFPQLPEL	9	Unmodified	_DAFPQLPEL_					0	0	0		ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant;ENSG00000175213|ENST00000311764|ZNF408	ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant	ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2667236328125	2	515.266207	1028.51786	0.48071	0.0002477	-0.31452	-0.00016206	0.16619	8.5633E-05	515.2660180879789	84.625	0.88593	84.706	84.422	85.308	0.080887					52	34	2	0	0	0	0.19905	1	22179	22179		23.79	8.9515	1	293100			4462	6846	2256	2256	6012	6012					0.004743478320278882
DAFPQLPEL	9	Unmodified	_DAFPQLPEL_					0	0	0		ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant;ENSG00000175213|ENST00000311764|ZNF408	ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant	ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2664794921875	2	515.266207	1028.51786	0.41721	0.00021497	0.39838	0.00020527	0.81558	0.00042024	515.2662647600564	84.758	0.81091	84.745	84.385	85.196	-0.01284					67	32	3	0	0	0	0.17555	1	22206	22206		27.223	16.399	1	282180			4463	6846	2256	2256	6013	6013					0.004743478320278882
DAFPSIDKI	9	Unmodified	_DAFPSIDKI_					0	0	0		ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000136379|ENST00000258884|ABHD17C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.2662048339844	2	503.266207	1004.51786	-0.052873	-2.6609E-05	0.62039	0.00031222	0.56752	0.00028561	503.26621508920016	60.003	0.60299	60.003	59.728	60.331	0					34	21	3	0	0	0	0.069258	1	14641	14641		45.74	21.719	1	542070			4464	3972	2257	2257	6014	6014					0.015783478320258837
DAFPSIDKI	9	Unmodified	_DAFPSIDKI_					0	0	0		ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000136379|ENST00000258884|ABHD17C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.26654052734375	2	503.266207	1004.51786	-0.21947	-0.00011045	0.40263	0.00020263	0.18316	9.2179E-05	503.2662103409096	59.866	0.52398	59.961	59.687	60.211	0.095089					32	18	3	0	0	0	0.07944	2	14576	14576;14624		41.956	23.809	1	589870			4465	3972	2257	2257	6015;6016	6015					0.015783478320258837
DAFPSIDKI	9	Unmodified	_DAFPSIDKI_					0	0	0		ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000136379|ENST00000258884|ABHD17C	ENSG00000136379|ENST00000258884|ABHD17C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2660827636719	2	503.266207	1004.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.01	1	59.998	59.498	60.498	-0.011486								0	0	0	0.11882	1	14641	14641		41.956	17.935	1				4466	3972	2257	2257	6017	6017					0.015783478320258837
DAFQLPGL	8	Unmodified	_DAFQLPGL_					0	0	0		nc|ENSG00000119535|Q99062-4|CSF3R;ENSG00000119535|ENST00000373106|CSF3R;nc|ENSG00000119535|Q99062-3|CSF3R;ENST00000480825.6_1_1:36931960-36932521:-|nuORF;ENST00000487540.6_1_1:36931960-36933786:-|nuORF	nc|ENSG00000119535|Q99062-4|CSF3R	nc|ENSG00000119535|Q99062-4|CSF3R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.729248046875	2	430.729261	859.443968	-0.060078	-2.5877E-05	-2.198	-0.00094674	-2.2581	-0.00097261	430.72917143718865	81.993	1.1006	81.993	81.412	82.513	0					70	42	3	0	0	0	0.056926	1	21387	21387		74.929	13.572	1	385170			4467	2884	2258	2258	6018	6018					0.008624244603652187
DAFQLPGL	8	Unmodified	_DAFQLPGL_					0	0	0		nc|ENSG00000119535|Q99062-4|CSF3R;ENSG00000119535|ENST00000373106|CSF3R;nc|ENSG00000119535|Q99062-3|CSF3R;ENST00000480825.6_1_1:36931960-36932521:-|nuORF;ENST00000487540.6_1_1:36931960-36933786:-|nuORF	nc|ENSG00000119535|Q99062-4|CSF3R	nc|ENSG00000119535|Q99062-4|CSF3R	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.7291259765625	2	430.729261	859.443968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.863	1	81.932	81.432	82.432	0.068993								0	0	0	0.13031	1	21334	21334		56.177	3.9087	1				4468	2884	2258	2258	6019	6019					0.008624244603652187
DAFQLPGL	8	Unmodified	_DAFQLPGL_					0	0	0		nc|ENSG00000119535|Q99062-4|CSF3R;ENSG00000119535|ENST00000373106|CSF3R;nc|ENSG00000119535|Q99062-3|CSF3R;ENST00000480825.6_1_1:36931960-36932521:-|nuORF;ENST00000487540.6_1_1:36931960-36933786:-|nuORF	nc|ENSG00000119535|Q99062-4|CSF3R	nc|ENSG00000119535|Q99062-4|CSF3R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.7291564941406	2	430.729261	859.443968	-0.019766	-8.5139E-06	-2.2782	-0.0009813	-2.298	-0.00098981	430.7290977599216	81.99	1.685	81.966	80.68	82.365	-0.02404					93	70	2	0	0	0	0.071344	1	21354	21354		68.081	3.8444	1	503740			4469	2884	2258	2258	6020	6020					0.008624244603652187
DAFQNAYL	8	Unmodified	_DAFQNAYL_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.21954345703125	2	471.2218	940.429047	0.11729	5.5271E-05	-3.3114	-0.0015604	-3.1941	-0.0015051	471.22074644282867	67.407	2.1557	67.407	65.577	67.732	0					89	76	2	0	0	0	0.4354	1	16949	16949		10.824	1.4765	1	203410			4470	5675	2259	2259	6021	6021					-0.04355067407630031
DAFQPRNI	8	Unmodified	_DAFQPRNI_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7485656738281	2	480.748516	959.482479	-0.17538	-8.4313E-05	0.64766	0.00031136	0.47229	0.00022705	480.748724509052	39.179	0.82193	39.179	38.873	39.695	0					62	29	3	0	0	0	0.16041	1	8308	8308		49.933	3.912	1	913170			4471	6632	2260	2260	6022	6022					0.001117300948862976
DAFQPRNI	8	Unmodified	_DAFQPRNI_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7485656738281	2	480.748516	959.482479	0.084637	4.0689E-05	0.40045	0.00019251	0.48508	0.0002332	480.7485972535712	39.103	0.7462	39.196	38.888	39.635	0.09267					57	26	3	0	0	0	0.23736	1	8268	8268		37.974	3.8716	1	865430			4472	6632	2260	2260	6023	6023					0.001117300948862976
DAFQPRNI	8	Unmodified	_DAFQPRNI_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7486267089844	2	480.748516	959.482479	0.38745	0.00018627	0.033988	1.6339E-05	0.42144	0.00020261	480.74844646529374	39.074	0.67001	39.174	38.923	39.593	0.099403					55	23	3	0	0	0	0.077335	1	8215	8215		65.235	10.461	1	1096300			4473	6632	2260	2260	6024	6024					0.001117300948862976
DAFQRLRKIEI	11	Unmodified	_DAFQRLRKIEI_					0	0	0		ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.30078125	3	463.605137	1387.79358	0.0293	1.3583E-05	0.04639	2.1507E-05	0.075689	3.509E-05	463.60512298419684	42.654	0.54443	42.745	42.441	42.985	0.091362					45	19	3	0	0	0	0.3325	1	9324	9324		2.2527	0	1	495280			4474	5982	2261	2261	6025	6025					0.11519799679945208
DAFRFENV	8	Unmodified	_DAFRFENV_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2408142089844	2	499.240524	996.466495	0.45163	0.00022547	0.13345	6.6625E-05	0.58509	0.0002921	499.2404771503512	52.968	0.67203	52.968	52.686	53.358	0					46	24	3	0	0	0	0.066604	2	12513	12463;12513		70.332	42.703	1	784980			4475	934	2262	2262	6026;6027	6027					-0.03187976141998661
DAFRFENV	8	Unmodified	_DAFRFENV_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.24041748046875	2	499.240524	996.466495	0.41097	0.00020517	0.23617	0.00011791	0.64715	0.00032308	499.24060390337075	53.164	0.72174	53.155	52.889	53.611	-0.0096054					43	26	2	0	0	0	0.0471	1	12553	12553		79.596	45.195	1	833410			4476	934	2262	2262	6028	6028					-0.03187976141998661
DAFRFENV	8	Unmodified	_DAFRFENV_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000495255.1_1_7:97493514-97498468:-|nuORF	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	499.240524	996.466495	0.64841	0.00032371	0.088412	4.4139E-05	0.73682	0.00036785	499.2405914999848	52.94	0.68521	52.996	52.746	53.431	0.056255	-0.043299	-6.3519E-05	NaN	79.596	37	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565670			4477	934	2262	2262							-0.03187976141998661
DAFRQPSLF	9	Unmodified	_DAFRQPSLF_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7770385742188	2	540.777274	1079.53999	0.32366	0.00017503	-1.3644	-0.00073781	-1.0407	-0.00056278	540.7763901372844	60.359	0.66595	60.359	60.126	60.792	0					37	24	3	0	0	0	0.063898	1	14747	14747		47.732	15.694	1	704710			4478	7963	2263	2263	6029	6029					0.003405723004561878
DAFRQPSLF	9	Unmodified	_DAFRQPSLF_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7763671875	2	540.777274	1079.53999	0.14341	7.7553E-05	-1.6843	-0.00091084	-1.5409	-0.00083329	540.7763815787513	60.331	0.47477	60.426	60.131	60.606	0.095089					30	17	2	0	0	0	0.083138	1	14722	14722		40.725	17.576	1	596690			4479	7963	2263	2263	6030	6030					0.003405723004561878
DAFRQPSLF	9	Unmodified	_DAFRQPSLF_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.777099609375	2	540.777274	1079.53999	0.4923	0.00026622	-1.4529	-0.00078568	-0.96058	-0.00051946	540.776356852291	60.344	0.43536	60.333	60.108	60.544	-0.011486					34	15	3	0	0	0	0.059067	1	14743	14743		49.527	17.49	1	701400			4480	7963	2263	2263	6031	6031					0.003405723004561878
DAFRQPSLFY	10	Unmodified	_DAFRQPSLFY_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3092651367188	2	622.308938	1242.60332	0.25342	0.00015771	2.6854	0.0016712	2.9389	0.0018289	622.3093388688302	64.894	2.01	64.894	63.997	66.007	0					270	73	6	0	0	0	0.0039563	5	16193	16129;16145;16193;16238;16250		97.741	57.791	1	5652600			4481	7963	2264	2264	6032;6033;6034;6035;6036	6034					-0.008274869822798792
DAFRQPSLFY	10	Unmodified	_DAFRQPSLFY_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3095703125	2	622.308938	1242.60332	0.084685	5.27E-05	2.8872	0.0017967	2.9719	0.0018494	622.30943591155	64.774	1.7494	64.867	64.066	65.815	0.09288					240	64	6	0	0	0	0.0033041	3	16162	16083;16113;16162		101.54	59.449	1	5693100			4482	7963	2264	2264	6037;6038;6039	6039					-0.008274869822798792
DAFRQPSLFY	10	Unmodified	_DAFRQPSLFY_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3094482421875	2	622.308938	1242.60332	0.080422	5.0047E-05	3.1162	0.0019392	3.1966	0.0019893	622.309552216226	64.896	1.8184	64.885	64.043	65.861	-0.011337					260	66	6	0	0	0	0.0037867	3	16146	16121;16146;16195		98.73	63.798	1	6307600			4483	7963	2264	2264	6040;6041;6042	6041					-0.008274869822798792
DAFRVNVI	8	Unmodified	_DAFRVNVI_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2618713378906	2	467.261259	932.507966	0.31554	0.00014744	-0.31333	-0.00014641	0.0022075	1.0315E-06	467.2615584693089	56.423	3.7959	56.423	56.074	59.87	0					317	136	5	0	0	0	3.4507E-06	11	13542	13493;13542;13592;13643;13694;13744;13790;13840;14279;14359;14521		172.91	104.83	1	105140000			4484	5510	2265	2265	6043;6044;6045;6046;6047;6048;6049;6050;6051;6052;6053	6044					0.03901204617318399
DAFRVNVI	8	Unmodified	_DAFRVNVI_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.26141357421875	2	467.261259	932.507966	0.48142	0.00022495	-0.39772	-0.00018584	0.083703	3.9111E-05	467.2615197490255	56.316	2.3205	56.395	56.085	58.405	0.078674					264	85	5	0	0	0	3.4507E-06	10	13467	13467;13509;13560;13609;13658;13710;13760;13810;13855;14056		172.91	112.52	1	112290000			4485	5510	2265	2265	6054;6055;6056;6057;6058;6059;6060;6061;6062;6063	6054					0.03901204617318399
DAFRVNVI	8	Unmodified	_DAFRVNVI_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2612609863281	2	467.261259	932.507966	0.037122	1.7346E-05	-0.25657	-0.00011989	-0.21945	-0.00010254	467.26105920863415	58.667	1.5396	58.759	58.418	59.957	0.091301					83	54	2	0	0	0	0.16041	2	14465	14281;14465		49.933	17.628	1	370890			4486	5510	2265	2265	6064;6065	6065					0.03901204617318399
DAFRVNVI	8	Unmodified	_DAFRVNVI_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2619323730469	2	467.261259	932.507966	0.85731	0.00040059	-0.5775	-0.00026984	0.27981	0.00013075	467.26134792068734	56.442	2.9456	56.423	56.107	59.053	-0.019081					282	107	5	0	0	0	3.4507E-06	10	13587	13500;13543;13587;13637;13690;13743;13795;13844;13898;14105		172.91	109.34	1	116230000			4487	5510	2265	2265	6066;6067;6068;6069;6070;6071;6072;6073;6074;6075	6068					0.03901204617318399
DAFRVNVI	8	Unmodified	_DAFRVNVI_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.26153564453125	2	467.261259	932.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.135	1	59.12	58.62	59.62	-0.014267								0	0	0	0.22812	1	14373	14373		39.95	15.929	1				4488	5510	2265	2265	6076	6076					0.03901204617318399
DAFRVNVI	8	Unmodified	_DAFRVNVI_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2611389160156	2	467.261259	932.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.48	1	59.469	58.969	59.969	-0.011486								0	0	0	0.04596	1	14479	14479		71.922	27.515	1				4489	5510	2265	2265	6077	6077					0.03901204617318399
DAFRVNVI	8	Unmodified	_DAFRVNVI_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2609558105469	2	467.261259	932.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.644	1	59.632	59.132	60.132	-0.011486								0	0	0	0.21581	1	14529	14529		41.84	16.44	1				4490	5510	2265	2265	6078	6078					0.03901204617318399
DAFRVNVI	8	Unmodified	_DAFRVNVI_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2602233886719	2	467.261259	932.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.039	1	60.028	59.528	60.528	-0.011486								0	0	0	0.22812	1	14650	14650		39.95	18.203	1				4491	5510	2265	2265	6079	6079					0.03901204617318399
DAFSFTSKV	9	Unmodified	_DAFSFTSKV_					0	0	0		nc|ENSG00000147099|Q9BY41-5|HDAC8;nc|ENSG00000147099|Q9BY41-4|HDAC8;ENSG00000147099|ENST00000373573|HDAC8	nc|ENSG00000147099|Q9BY41-5|HDAC8	nc|ENSG00000147099|Q9BY41-5|HDAC8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2505798339844	2	501.250557	1000.48656	0.54597	0.00027367	0.13011	6.5218E-05	0.67608	0.00033888	501.2504961122079	53.627	0.88187	53.627	53.358	54.24	0					63	32	4	0	0	0	0.0013924	2	12660	12660;12708		117.76	80.216	1	1193200			4492	4744	2266	2266	6080;6081	6080					-0.013662252020480992
DAFSFTSKV	9	Unmodified	_DAFSFTSKV_					0	0	0		nc|ENSG00000147099|Q9BY41-5|HDAC8;nc|ENSG00000147099|Q9BY41-4|HDAC8;ENSG00000147099|ENST00000373573|HDAC8	nc|ENSG00000147099|Q9BY41-5|HDAC8	nc|ENSG00000147099|Q9BY41-5|HDAC8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2504577636719	2	501.250557	1000.48656	0.23501	0.0001178	0.32313	0.00016197	0.55815	0.00027977	501.2506006465933	53.548	0.80725	53.604	53.404	54.212	0.056255					59	30	3	0	0	0	0.001957	2	12642	12642;12694		110.55	76.45	1	1260300			4493	4744	2266	2266	6082;6083	6082					-0.013662252020480992
DAFSFTSKV	9	Unmodified	_DAFSFTSKV_					0	0	0		nc|ENSG00000147099|Q9BY41-5|HDAC8;nc|ENSG00000147099|Q9BY41-4|HDAC8;ENSG00000147099|ENST00000373573|HDAC8	nc|ENSG00000147099|Q9BY41-5|HDAC8	nc|ENSG00000147099|Q9BY41-5|HDAC8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2506408691406	2	501.250557	1000.48656	0.45184	0.00022649	0.051028	2.5578E-05	0.50287	0.00025206	501.25047096133414	53.782	0.75737	53.773	53.531	54.289	-0.0096054					49	27	2	0	0	0	0.0013924	2	12714	12714;12767		117.76	90.877	1	1319600			4494	4744	2266	2266	6084;6085	6084					-0.013662252020480992
DAFSRMPLM	9	2 Oxidation (M)	_DAFSRM(Oxidation (M))PLM(Oxidation (M))_		DAFSRM(1)PLM(1)		DAFSRM(81)PLM(81)	0	0	2		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2492065429688	2	550.249177	1098.4838	0.42855	0.00023581	0.059363	3.2664E-05	0.48792	0.00026848	550.2491717739446	38.019	0.97694	38.019	37.646	38.623	0					78	34	3	0	0	0	0.0091837	1	7920	7920		80.676	48.371	1	723420			4495	706	2267	2267	6086	6086		90;91			-0.06150139922874587
DAFSRMPLM	9	2 Oxidation (M)	_DAFSRM(Oxidation (M))PLM(Oxidation (M))_		DAFSRM(1)PLM(1)		DAFSRM(96)PLM(96)	0	0	2		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2493286132812	2	550.249177	1098.4838	0.51288	0.00028221	0.0092796	5.1061E-06	0.52216	0.00028732	550.2491086285258	37.968	1.3584	38.059	37.667	39.026	0.090881					84	49	3	0	0	0	0.0037449	1	7876	7876		96.367	64.061	1	726980			4496	706	2267	2267	6087	6087		90;91			-0.06150139922874587
DAFTFRHFL	9	Unmodified	_DAFTFRHFL_					0	0	0		KLHL26|p.S183W|1|0.2|ENSG00000167487|chr19:18667945-18667945|C/G|missense_variant;ENSG00000167487|ENST00000300976|KLHL26	KLHL26|p.S183W|1|0.2|ENSG00000167487|chr19:18667945-18667945|C/G|missense_variant	KLHL26|p.S183W|1|0.2|ENSG00000167487|chr19:18667945-18667945|C/G|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.29296875	2	577.293091	1152.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.002	1	62.099	61.599	62.599	0.096985								0	0	0	0.026891	1	15262	15262		67.838	38.757	1				4497	6179	2268	2268	6088	6088					0.0014456505441557965
DAFVFSYL	8	Unmodified	_DAFVFSYL_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2834777832031	2	481.236919	960.459284	0.18292	8.8026E-05	-0.30368	-0.00014614	-0.12076	-5.8114E-05	481.2367921982697	91.572	0.39372	91.572	91.366	91.76	0					52	30	3	0	0	0	0.2646	1	24301	24301		46.021	27.886	1	147230			4498	6698	2269	2269	6089	6089					-0.022527087424236925
DAFVFSYL	8	Unmodified	_DAFVFSYL_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2834777832031	2	481.236919	960.459284	0.2553	0.00012286	-0.87178	-0.00041953	-0.61647	-0.00029667	481.2364005918613	91.43	0.40172	91.521	91.318	91.72	0.090675					67	32	3	0	0	0	0.14491	1	24245	24245		61.357	32.871	1	280220			4499	6698	2269	2269	6090	6090					-0.022527087424236925
DAFVFSYL	8	Unmodified	_DAFVFSYL_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.28350830078125	2	481.236919	960.459284	0.43065	0.00020724	-0.96311	-0.00046348	-0.53246	-0.00025624	481.2363726895579	91.552	0.51214	91.552	91.289	91.801	0.00046539					64	33	3	0	0	0	0.20083	1	24290	24290		61.357	25.313	1	325530			4500	6698	2269	2269	6091	6091					-0.022527087424236925
DAFVGGHRI	9	Unmodified	_DAFVGGHRI_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2565002441406	2	486.256508	970.498464	0.17125	8.327E-05	3.2007	0.0015564	3.3719	0.0016396	486.2565202941006	30.956	1.7055	30.956	30.194	31.9	0					155	60	4	0	0	0	0.059216	1	5735	5735		60.074	31.587	1	1068400			4501	6225	2270	2270	6092	6092					0.012034363317980024
DAFVGGHRI	9	Unmodified	_DAFVGGHRI_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.256591796875	2	486.256508	970.498464	0.11113	5.4037E-05	3.3513	0.0016296	3.4624	0.0016836	486.2564712575051	30.946	1.4566	30.974	30.324	31.781	0.027946					144	51	4	0	0	0	0.075169	1	5737	5737		62.573	26.528	1	1086200			4502	6225	2270	2270	6093	6093					0.012034363317980024
DAFVGGHRI	9	Unmodified	_DAFVGGHRI_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.76092529296875	2	486.256508	970.498464	0.16932	8.2332E-05	3.168	0.0015405	3.3373	0.0016228	486.25642413671767	30.908	1.6558	30.935	30.22	31.876	0.027157					152	59	4	0	0	0	0.059216	1	5699	5699		69.105	33.061	1	1170600			4503	6225	2270	2270	6094	6094					0.012034363317980024
DAFVPPPR	8	Unmodified	_DAFVPPPR_					0	0	0			REV__ENSG00000204839|ENST00000398882|MROH6	REV__ENSG00000204839|ENST00000398882|MROH6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2663879394531	2	449.742702	897.470852	0.063071	2.8366E-05	-0.20403	-9.1759E-05	-0.14095	-6.3393E-05	449.7426048915249	42.589	0.97623	42.674	42.295	43.271	0.085197					68	35	3	0	0	0	0.34131	1	9221	9221		7.9102	0	1	376440	+		4504	18966	2271	2271	6095	6095					0.0180153307155706
DAFVVVHRI	9	Unmodified	_DAFVVVHRI_					0	0	0		ENSG00000120594|ENST00000377252|PLXDC2;nc|ENSG00000120594|Q6UX71-2|PLXDC2;ENST00000377238.2_1_10:20332341-20568745:+|nuORF	ENSG00000120594|ENST00000377252|PLXDC2	ENSG00000120594|ENST00000377252|PLXDC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7957763671875	2	528.303458	1054.59236	0.6093	0.00032189	0.36985	0.0001954	0.97915	0.00051729	528.3035177812797	45.255	0.59834	45.255	45.015	45.614	0					55	21	4	0	0	0	0.17277	1	10182	10182		27.629	15.097	1	1304300			4505	2952	2272	2272	6096	6096					0.06725155434082808
DAFVVVHRI	9	Unmodified	_DAFVVVHRI_					0	0	0		ENSG00000120594|ENST00000377252|PLXDC2;nc|ENSG00000120594|Q6UX71-2|PLXDC2;ENST00000377238.2_1_10:20332341-20568745:+|nuORF	ENSG00000120594|ENST00000377252|PLXDC2	ENSG00000120594|ENST00000377252|PLXDC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3038330078125	2	528.303458	1054.59236	0.57327	0.00030286	0.35298	0.00018648	0.92625	0.00048934	528.3035640110978	45.101	0.65203	45.17	44.922	45.574	0.068573					54	22	3	0	0	0	0.037019	2	10037	10037;10116		57.722	37.268	1	1346700			4506	2952	2272	2272	6097;6098	6097					0.06725155434082808
DAFVVVHRI	9	Unmodified	_DAFVVVHRI_					0	0	0		ENSG00000120594|ENST00000377252|PLXDC2;nc|ENSG00000120594|Q6UX71-2|PLXDC2;ENST00000377238.2_1_10:20332341-20568745:+|nuORF	ENSG00000120594|ENST00000377252|PLXDC2	ENSG00000120594|ENST00000377252|PLXDC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7955932617188	2	528.303458	1054.59236	0.61563	0.00032524	0.34861	0.00018417	0.96424	0.00050941	528.3036019498971	45.087	0.77393	45.162	44.911	45.685	0.075047					64	28	4	0	0	0	0.21447	1	10131	10131		21.537	12.154	1	1432700			4507	2952	2272	2272	6099	6099					0.06725155434082808
DAGDHVTK	8	Unmodified	_DAGDHVTK_					0	0	0		ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.57745361328125	2	421.703774	841.392996	-0.11388	-4.8024E-05	0.57901	0.00024417	0.46513	0.00019615	421.7037579009633	15.977	0.33798	15.914	15.756	16.094	-0.062533					15	11	2	0	0	0	0.34247	1	1190	1190		8.5933	0	1	21337			4508	4197	2273	2273	6100	6100					-0.03404524584459523
DAGLDGAWKFF	11	Unmodified	_DAGLDGAWKFF_					0	0	0			REV__ENSG00000185448|ENST00000346193|FAM47A	REV__ENSG00000185448|ENST00000346193|FAM47A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.53143310546875	3	409.532868	1225.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.278	1	29.278	28.778	29.778	0								0	0	0	0.32896	1	5217	5217		12.856	1.3381	1		+		4509	18381	2274	2274	6101	6101					-0.02699175873635795
DAGLDGAWKFF	11	Unmodified	_DAGLDGAWKFF_					0	0	0			REV__ENSG00000185448|ENST00000346193|FAM47A	REV__ENSG00000185448|ENST00000346193|FAM47A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5325622558594	3	409.532868	1225.57677	0.098018	4.0141E-05	-1.0813	-0.00044282	-0.98325	-0.00040267	409.5325423311069	29.146	0.38857	29.158	29	29.389	0.012266					20	13	2	0	0	0	0.36161	1	5192	5192		16.275	1.3174	1	226290	+		4510	18381	2274	2274	6102	6102					-0.02699175873635795
DAGMSMMSRD	10	Unmodified	_DAGMSMMSRD_					0	0	0			REV__nc|ENSG00000159140|P18583-6|SON	REV__nc|ENSG00000159140|P18583-6|SON	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3001098632812	2	550.712101	1099.40965	0.50836	0.00027996	-0.28523	-0.00015708	0.22313	0.00012288	550.7118352115396	63.038	0.45972	63.133	62.905	63.365	0.095722					28	16	2	0	0	0	0.31581	1	15575	15575		4.5289	1.2476	1	249880	+		4511	16837	2275	2275	6103	6103					-0.13607851076676525
DAGNYSFTI	9	Unmodified	_DAGNYSFTI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.78729248046875	2	494.224539	986.434526	0.94488	0.00046698	0.60621	0.00029961	1.5511	0.00076659	494.2246486844252	50.611	0.82111	50.631	50.335	51.156	0.020691					62	30	3	0	0	0	0.2322	1	11748	11748		14.838	0	1	551280			4512	5186;12769	2276	2276	6104	6104					-0.059233886157812776
DAGRENGAL	9	Unmodified	_DAGRENGAL_					0	0	0			REV__KIF2B|p.K657Rfs*3|1|0.2|ENSG00000141200|chr17:53825000-53825000|A/-|frameshift_variant	REV__KIF2B|p.K657Rfs*3|1|0.2|ENSG00000141200|chr17:53825000-53825000|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2531433105469	2	451.719956	901.425358	0.35342	0.00015965	2.1217	0.00095841	2.4751	0.0011181	451.7208273090942	58.689	0.77839	58.675	58.47	59.248	-0.014267					43	27	2	0	0	0	0.25066	1	14407	14407		11.64	1.4569	1	370710	+		4513	13705	2277	2277	6105	6105					-0.029297371814664075
DAGRLLYI	8	Unmodified	_DAGRLLYI_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.7633056640625	2	460.763635	919.512717	0.2698	0.00012431	-0.10322	-4.756E-05	0.16658	7.6754E-05	460.76351334746033	59.095	0.64974	59.081	58.777	59.427	-0.014267					41	22	3	0	0	0	0.14707	1	14362	14362		52.268	12.311	1	397060			4514	2814	2278	2278	6106	6106					0.04974088760093309
DAGRLLYI	8	Unmodified	_DAGRLLYI_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	460.763635	919.512717	0.0014059	6.4779E-07	0.63705	0.00029353	0.63845	0.00029418	460.7636803891484	59.112	0.6456	59.112	58.767	59.412	0	0.0199	0.00047834	NaN	52.268	51	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339260			4515	2814	2278	2278							0.04974088760093309
DAGRLLYI	8	Unmodified	_DAGRLLYI_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	460.763635	919.512717	0.099678	4.5928E-05	0.099703	4.594E-05	0.19938	9.1867E-05	460.76353702376775	58.992	0.58615	59.084	58.792	59.379	0.091305	-0.0085619	-1.6842E-05	NaN	52.268	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347260			4516	2814	2278	2278							0.04974088760093309
DAGRRPVI	8	Unmodified	_DAGRRPVI_					0	0	0		ENST00000264451.11_1_4:41992594-42003644:+|nuORF	ENST00000264451.11_1_4:41992594-42003644:+|nuORF	ENST00000264451.11_1_4:41992594-42003644:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.78680419921875	2	442.259051	882.503549	0.0030722	1.3587E-06	-0.21322	-9.4298E-05	-0.21015	-9.2939E-05	442.25885739965673	73.447	0.46993	73.501	73.255	73.725	0.053833					25	16	2	0	0	0	0.34297	1	18814	18814		2.8892	0	1	75586			4517	9026	2279	2279	6107	6107					0.05759740194423557
DAGYIFGLQ	9	Unmodified	_DAGYIFGLQ_					0	0	0		ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	ENSG00000068745|ENST00000328631|IP6K2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.235107421875	2	492.245275	982.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.328	1	69.306	68.806	69.806	-0.022087								0	0	0	0.20238	1	17500	17500		21.747	6.9084	1				4518	887	2280	2280	6108	6108					-0.01594207856464891
DAHADPEI	8	Unmodified	_DAHADPEI_					0	0	0		nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM;ENST00000465585.1_1_7:107796889-107818537:-|nuORF	nc|ENSG00000091129|Q92823-3|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.2377624511719	2	434.195782	866.377011	-0.064166	-2.786E-05	0.39526	0.00017162	0.33109	0.00014376	434.1958673960287	26.759	0.59388	26.73	26.528	27.122	-0.029554					48	20	3	0	0	0	0.30503	1	4468	4468		30.225	12.09	1	147560			4519	1397	2281	2281	6109	6109					-0.06152230821385274
DAHADPEI	8	Unmodified	_DAHADPEI_					0	0	0		nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM;ENST00000465585.1_1_7:107796889-107818537:-|nuORF	nc|ENSG00000091129|Q92823-3|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.2377014160156	2	434.195782	866.377011	0.079483	3.4511E-05	0.052834	2.294E-05	0.13232	5.7452E-05	434.195717734608	26.781	0.52916	26.769	26.541	27.07	-0.01156					33	18	3	0	0	0	0.31934	1	4489	4489		24.674	11.166	1	172980			4520	1397	2281	2281	6110	6110					-0.06152230821385274
DAHEFLIAA	9	Unmodified	_DAHEFLIAA_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENSG00000273820|ENST00000621775|USP27X	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7169494628906	2	493.750724	985.486896	0.55861	0.00027582	-0.57603	-0.00028441	-0.017414	-8.5984E-06	493.750328024381	56.553	0.532	56.553	56.344	56.876	0					31	19	2	0	0	0	0.17611	1	13589	13589		20.454	3.5113	1	583460			4521	3157	2282	2282	6111	6111					-0.006428054821981277
DAHEFLIAA	9	Unmodified	_DAHEFLIAA_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENSG00000273820|ENST00000621775|USP27X	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7172546386719	2	493.750724	985.486896	0.73004	0.00036046	-0.45005	-0.00022221	0.27999	0.00013825	493.7504111873901	56.478	0.60153	56.557	56.358	56.959	0.078674					32	22	2	0	0	0	0.19839	1	13539	13539		21.747	2.4897	1	617900			4522	3157	2282	2282	6112	6112					-0.006428054821981277
DAHEFLIAA	9	Unmodified	_DAHEFLIAA_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENSG00000273820|ENST00000621775|USP27X	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.750724	985.486896	1.0386	0.0005128	-1.1487	-0.00056719	-0.11014	-5.4384E-05	493.750101512734	56.593	0.54092	56.574	56.403	56.944	-0.019077	0.012909	-0.00045931	NaN	20.454	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	586540			4523	3157	2282	2282							-0.006428054821981277
DAHEFLIAI	9	Unmodified	_DAHEFLIAI_					0	0	0		ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7745361328125	2	514.7742	1027.53385	0.16167	8.3223E-05	0.33066	0.00017021	0.49233	0.00025344	514.7743587990269	73.469	0.98759	73.469	72.75	73.738	0					90	35	4	0	0	0	0.25314	1	18820	18820		15.847	2.8047	1	739120			4524	8577	2283	2283	6113	6113					0.021180540689329064
DAHEFLIAI	9	Unmodified	_DAHEFLIAI_					0	0	0		ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7744140625	2	514.7742	1027.53385	0.12909	6.645E-05	0.21455	0.00011045	0.34364	0.0001769	514.7742361374837	73.431	0.85403	73.485	72.871	73.725	0.053841					77	30	4	0	0	0	0.25314	1	18804	18804		15.847	3.3156	1	581770			4525	8577	2283	2283	6114	6114					0.021180540689329064
DAHEFLIAI	9	Unmodified	_DAHEFLIAI_					0	0	0		ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7744140625	2	514.7742	1027.53385	0.17714	9.1185E-05	0.24441	0.00012582	0.42154	0.000217	514.774288703304	73.562	0.89635	73.532	72.9	73.797	-0.030144					80	32	4	0	0	0	0.21303	1	18818	18818		21.747	3.6117	1	797660			4526	8577	2283	2283	6115	6115					0.021180540689329064
DAHEFLNYL	9	Unmodified	_DAHEFLNYL_					0	0	0		nc|ENSG00000109189|P62068-2|USP46;ENST00000514536.5_1_4:53464769-53497293:-|nuORF;nc|ENSG00000109189|P62068-4|USP46;nc|ENSG00000109189|P62068-3|USP46;ENSG00000109189|ENST00000441222|USP46;ENSG00000152484|ENST00000282344|USP12	nc|ENSG00000109189|P62068-2|USP46	nc|ENSG00000109189|P62068-2|USP46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.26708984375	2	561.266739	1120.51892	0.30979	0.00017387	0.72222	0.00040536	1.032	0.00057923	561.2667024445878	70.347	0.85317	70.347	70.049	70.902	0					75	30	3	0	0	0	0.004681	2	17806	17806;17851		88.954	27.596	1	2100600			4527	2244	2284	2284	6116;6117	6116					-0.03651437799044288
DAHEFLNYL	9	Unmodified	_DAHEFLNYL_					0	0	0		nc|ENSG00000109189|P62068-2|USP46;ENST00000514536.5_1_4:53464769-53497293:-|nuORF;nc|ENSG00000109189|P62068-4|USP46;nc|ENSG00000109189|P62068-3|USP46;ENSG00000109189|ENST00000441222|USP46;ENSG00000152484|ENST00000282344|USP12	nc|ENSG00000109189|P62068-2|USP46	nc|ENSG00000109189|P62068-2|USP46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2667846679688	2	561.266739	1120.51892	0.37997	0.00021326	0.42764	0.00024002	0.80761	0.00045329	561.2666967424017	70.381	0.83401	70.442	70.07	70.904	0.060776					67	29	3	0	0	0	0.0037772	2	17798	17798;17841		96.111	34.753	1	2079300			4528	2244	2284	2284	6118;6119	6118					-0.03651437799044288
DAHEFLNYL	9	Unmodified	_DAHEFLNYL_					0	0	0		nc|ENSG00000109189|P62068-2|USP46;ENST00000514536.5_1_4:53464769-53497293:-|nuORF;nc|ENSG00000109189|P62068-4|USP46;nc|ENSG00000109189|P62068-3|USP46;ENSG00000109189|ENST00000441222|USP46;ENSG00000152484|ENST00000282344|USP12	nc|ENSG00000109189|P62068-2|USP46	nc|ENSG00000109189|P62068-2|USP46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.266845703125	2	561.266739	1120.51892	0.31376	0.00017611	0.58876	0.00033045	0.90252	0.00050656	561.2666794175757	70.464	0.8661	70.439	70.015	70.881	-0.024872					75	30	3	0	0	0	0.004681	2	17814	17814;17862		88.954	27.596	1	2360000			4529	2244	2284	2284	6120;6121	6120					-0.03651437799044288
DAHFTFTEAN	10	Unmodified	_DAHFTFTEAN_					0	0	0			REV__ALB|p.I537V|1|0.17|ENSG00000163631|chr4:73418268-73418268|A/G|missense_variant	REV__ALB|p.I537V|1|0.17|ENSG00000163631|chr4:73418268-73418268|A/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.36865234375	2	576.751453	1151.48835	-0.84568	-0.00048775	0.029366	1.6937E-05	-0.81632	-0.00047081	577.2530085594267	35.095	0.76582	35.095	34.588	35.354	0					48	27	3	0	0	0	0.31629	1	6913	6913		10.074	0.6908	1	334790	+	+	4530	13097	2285	2285	6122	6122					-0.0813321618406917
DAHIIGRI	8	Unmodified	_DAHIIGRI_					0	0	0		ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.24554443359375	2	447.761426	893.5083	0.043073	1.9286E-05	0.053812	2.4095E-05	0.096885	4.3381E-05	447.76069413295164	34.025	1.0855	34.092	33.824	34.909	0.066704					67	38	3	0	0	0	0.32435	1	6704	6704		16.942	4.4107	1	425630			4531	7136	2286	2286	6123	6123					0.05728624337200472
DAHIIGRI	8	Unmodified	_DAHIIGRI_					0	0	0		ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	447.761426	893.5083	0.33877	0.00015169	0.4622	0.00020696	0.80097	0.00035864	447.7609891785279	34.159	0.58414	34.159	33.916	34.5	0	0.046808	0.00019271	NaN	16.942	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339180			4532	7136	2286	2286							0.05728624337200472
DAHIIGRI	8	Unmodified	_DAHIIGRI_					0	0	0		ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	447.761426	893.5083	0.40817	0.00018276	0.23062	0.00010326	0.63879	0.00028602	447.7609128182446	34.019	0.58963	34.085	33.845	34.435	0.06636	-0.026899	-1.4673E-05	NaN	16.942	53	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345720			4533	7136	2286	2286							0.05728624337200472
DAHIYLNHI	9	Unmodified	_DAHIYLNHI_					0	0	0		ENST00000581920.1_1_18:667730-672994:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS	ENST00000581920.1_1_18:667730-672994:+|nuORF	ENST00000581920.1_1_18:667730-672994:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2830200195312	2	548.282723	1094.55089	0.40409	0.00022156	0.24318	0.00013333	0.64726	0.00035488	548.2827321640708	43.203	1.3071	43.203	42.706	44.013	0					121	47	5	0	0	0	1.3869E-07	3	9475	9427;9475;9528		174.73	134.77	1	5084000			4534	6947	2287	2287	6124;6125;6126	6125					0.00739974674752375
DAHIYLNHI	9	Unmodified	_DAHIYLNHI_					0	0	0		ENST00000581920.1_1_18:667730-672994:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS	ENST00000581920.1_1_18:667730-672994:+|nuORF	ENST00000581920.1_1_18:667730-672994:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2830200195312	2	548.282723	1094.55089	0.52678	0.00028882	0.054009	2.9612E-05	0.58079	0.00031844	548.2826065550915	42.934	1.233	43.02	42.565	43.798	0.085197					120	44	5	0	0	0	6.7091E-11	4	9394	9345;9394;9443;9464		181.33	141.37	1	5531900			4535	6947	2287	2287	6127;6128;6129;6130	6128					0.00739974674752375
DAHIYLNHI	9	Unmodified	_DAHIYLNHI_					0	0	0		ENST00000581920.1_1_18:667730-672994:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS;ENSG00000176890|ENST00000323274|TYMS	ENST00000581920.1_1_18:667730-672994:+|nuORF	ENST00000581920.1_1_18:667730-672994:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.282958984375	2	548.282723	1094.55089	0.29389	0.00016113	0.23792	0.00013045	0.5318	0.00029158	548.2827599029714	42.855	1.1895	42.946	42.527	43.717	0.091362					136	43	5	0	0	0	3.5085E-07	3	9360	9317;9360;9404		166.45	124.35	1	5344400			4536	6947	2287	2287	6131;6132;6133	6132					0.00739974674752375
DAHRLHHV	8	Unmodified	_DAHRLHHV_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.7594909667969	2	492.759749	983.504946	0.025239	1.2437E-05	0.063085	3.1086E-05	0.088325	4.3523E-05	492.7597055648656	12.767	0.39073	12.767	12.641	13.031	0					29	13	4	0	0	0	0.20663	1	223	223		41.84	20.093	1	283070			4537	952	2288	2288	6134	6134					0.01253374283191988
DAHRLHHV	8	Unmodified	_DAHRLHHV_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.7596130371094	2	492.759749	983.504946	0.062587	3.084E-05	0.047367	2.3341E-05	0.10995	5.4181E-05	492.75971326178126	12.808	0.4617	12.708	12.549	13.011	-0.09929					34	15	4	0	0	0	0.14707	1	235	235		52.268	25.385	1	282990			4538	952	2288	2288	6135	6135					0.01253374283191988
DAHRLHHV	8	Unmodified	_DAHRLHHV_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.75970458984375	2	492.759749	983.504946	-0.081812	-4.0314E-05	0.097009	4.7802E-05	0.015197	7.4885E-06	492.75973792091963	12.813	0.38296	12.746	12.61	12.993	-0.067495					27	12	4	0	0	0	0.30157	1	241	241		30.637	16.055	1	300840			4539	952	2288	2288	6136	6136					0.01253374283191988
DAHRSHPFI	9	Unmodified	_DAHRSHPFI_					0	0	0		nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE;nc|ENSG00000105669|O14579-2|COPE;ENST00000595984.5_1_19:19010490-19010792:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF	nc|ENSG00000105669|O14579-3|COPE	nc|ENSG00000105669|O14579-3|COPE	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.261474609375	2	540.27269	1078.53083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.759	1	20.759	20.259	21.259	0								0	0	0	0.19236	1	2636	2636		24.882	1.7331	1				4540	2005	2289	2289	6137	6137					-0.005297762651935045
DAHRSHPFI	9	Unmodified	_DAHRSHPFI_					0	0	0		nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE;nc|ENSG00000105669|O14579-2|COPE;ENST00000595984.5_1_19:19010490-19010792:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF	nc|ENSG00000105669|O14579-3|COPE	nc|ENSG00000105669|O14579-3|COPE	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2609252929688	2	540.27269	1078.53083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.328	1	21.328	20.828	21.828	0								0	0	0	0.20303	1	2808	2808		21.537	4.4241	1				4541	2005	2289	2289	6138	6138					-0.005297762651935045
DAHRSHPFI	9	Unmodified	_DAHRSHPFI_					0	0	0		nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE;nc|ENSG00000105669|O14579-2|COPE;ENST00000595984.5_1_19:19010490-19010792:-|nuORF;ENST00000598969.5_1_19:19010490-19016602:-|nuORF	nc|ENSG00000105669|O14579-3|COPE	nc|ENSG00000105669|O14579-3|COPE	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.261474609375	2	540.27269	1078.53083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.961	1	20.851	20.351	21.351	-0.11003								0	0	0	0.16729	1	2699	2699		30.703	10.25	1				4542	2005	2289	2289	6139	6139					-0.005297762651935045
DAHRSVLV	8	Unmodified	_DAHRSVLV_					0	0	0		ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2;nc|ENSG00000101096|Q13469-5|NFATC2;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2	ENSG00000101096|ENST00000371564|NFATC2	ENSG00000101096|ENST00000371564|NFATC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.750732421875	2	448.751059	895.487565	0.014299	6.4166E-06	-3.3142	-0.0014872	-3.2999	-0.0014808	448.7509454548908	22.723	0.89301	22.723	22.331	23.224	0					66	30	3	0	0	0	0.3402	1	3195	3195		18.373	9.7798	1	124550			4543	1662	2290	2290	6140	6140					0.035640339575252256
DAHRSVLV	8	Unmodified	_DAHRSVLV_					0	0	0		ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2;nc|ENSG00000101096|Q13469-5|NFATC2;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2	ENSG00000101096|ENST00000371564|NFATC2	ENSG00000101096|ENST00000371564|NFATC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7509460449219	2	448.751059	895.487565	-0.024755	-1.1109E-05	0.22195	9.96E-05	0.1972	8.8492E-05	448.7510000543144	22.726	0.64074	22.638	22.352	22.993	-0.087608					35	22	2	0	0	0	0.30499	1	3236	3236		32.786	15.843	1	120390			4544	1662	2290	2290	6141	6141					0.035640339575252256
DAHRSVLV	8	Unmodified	_DAHRSVLV_					0	0	0		ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2;nc|ENSG00000101096|Q13469-5|NFATC2;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2	ENSG00000101096|ENST00000371564|NFATC2	ENSG00000101096|ENST00000371564|NFATC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7511291503906	2	448.751059	895.487565	0.071229	3.1964E-05	-0.42843	-0.00019226	-0.3572	-0.00016029	448.7508488877863	22.68	0.76703	22.635	22.266	23.033	-0.044867					46	26	3	0	0	0	0.34292	1	3224	3224		8.1555	2.4237	1	129310			4545	1662	2290	2290	6142	6142					0.035640339575252256
DAHSNLASI	9	Unmodified	_DAHSNLASI_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.229736328125	2	464.230156	926.445759	-0.63469	-0.00029464	0.17529	8.1375E-05	-0.4594	-0.00021327	464.2301083193254	35.285	0.88197	35.285	35	35.882	0					82	31	4	0	0	0	0.014888	3	7037	7037;7088;7114		71.922	23.576	1	1412000			4546	4752	2291	2291	6143;6144;6145	6143					-0.02040566521668552
DAHSNLASI	9	Unmodified	_DAHSNLASI_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.22979736328125	2	464.230156	926.445759	-0.60025	-0.00027865	0.064249	2.9827E-05	-0.536	-0.00024883	464.2301054391018	35.209	0.90903	35.285	34.933	35.842	0.075306					64	32	3	0	0	0	0.014888	2	7018	7018;7069		71.922	28.064	1	1661500			4547	4752	2291	2291	6146;6147	6146					-0.02040566521668552
DAHSNLASI	9	Unmodified	_DAHSNLASI_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.2299499511719	2	464.230156	926.445759	-0.62667	-0.00029092	0.27569	0.00012799	-0.35097	-0.00016293	464.2301781848538	35.162	1.085	35.24	34.837	35.922	0.077377					76	38	4	0	0	0	0.004681	2	7059	7008;7059		88.954	27.596	1	1735000			4548	4752	2291	2291	6148;6149	6149					-0.02040566521668552
DAHSTLAKI	9	Unmodified	_DAHSTLAKI_					0	0	0		ENSG00000186827|ENST00000379236|TNFRSF4;ENST00000497869.5_1_1:1146937-1148774:-|nuORF	ENSG00000186827|ENST00000379236|TNFRSF4	ENSG00000186827|ENST00000379236|TNFRSF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7720642089844	2	478.263999	954.513445	-0.10658	-5.0971E-05	-0.11461	-5.4813E-05	-0.22118	-0.00010578	478.2639690988849	28.275	0.75544	28.275	28.036	28.791	0					47	25	3	0	0	0	0.18936	1	4912	4912		32.786	13.529	1	170730			4549	7647	2292	2292	6150	6150					0.03436883409153779
DAHSTLAKI	9	Unmodified	_DAHSTLAKI_					0	0	0		ENSG00000186827|ENST00000379236|TNFRSF4;ENST00000497869.5_1_1:1146937-1148774:-|nuORF	ENSG00000186827|ENST00000379236|TNFRSF4	ENSG00000186827|ENST00000379236|TNFRSF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.77178955078125	2	478.263999	954.513445	0.034934	1.6708E-05	-0.33139	-0.00015849	-0.29645	-0.00014178	478.26384882101064	28.398	0.57392	28.394	28.055	28.629	-0.0042572					37	20	2	0	0	0	0.19686	1	4920	4920		31.268	12.011	1	192080			4550	7647	2292	2292	6151	6151					0.03436883409153779
DAHSTLAKI	9	Unmodified	_DAHSTLAKI_					0	0	0		ENSG00000186827|ENST00000379236|TNFRSF4;ENST00000497869.5_1_1:1146937-1148774:-|nuORF	ENSG00000186827|ENST00000379236|TNFRSF4	ENSG00000186827|ENST00000379236|TNFRSF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.77197265625	2	478.263999	954.513445	-0.060114	-2.875E-05	0.080483	3.8492E-05	0.020369	9.7418E-06	478.26399904685053	28.279	0.75249	28.28	28.023	28.776	0.0004673					43	26	2	0	0	0	0.16853	1	4908	4908		38.176	16.639	1	201170			4551	7647	2292	2292	6152	6152					0.03436883409153779
DAHVEHSI	8	Unmodified	_DAHVEHSI_					0	0	0		TREM2|p.A180Pfs*9|1|0.3|ENSG00000095970|chr6:41159011-41159011|C/-|frameshift_variant;nc|ENSG00000095970|Q9NZC2-2|TREM2;nc|ENSG00000095970|Q9NZC2-3|TREM2;ENSG00000095970|ENST00000373113|TREM2	TREM2|p.A180Pfs*9|1|0.3|ENSG00000095970|chr6:41159011-41159011|C/-|frameshift_variant	TREM2|p.A180Pfs*9|1|0.3|ENSG00000095970|chr6:41159011-41159011|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2168884277344	2	454.217049	906.419545	-0.0151	-6.8586E-06	-0.49904	-0.00022667	-0.51414	-0.00023353	454.21665219880055	18.062	0.48931	17.944	17.694	18.184	-0.11739					26	16	2	0	0	0	0.30241	1	1809	1809		32.305	9.1571	1	92668			4552	1461	2293	2293	6153	6153					-0.037408356931450726
DAHVEHSI	8	Unmodified	_DAHVEHSI_					0	0	0		TREM2|p.A180Pfs*9|1|0.3|ENSG00000095970|chr6:41159011-41159011|C/-|frameshift_variant;nc|ENSG00000095970|Q9NZC2-2|TREM2;nc|ENSG00000095970|Q9NZC2-3|TREM2;ENSG00000095970|ENST00000373113|TREM2	TREM2|p.A180Pfs*9|1|0.3|ENSG00000095970|chr6:41159011-41159011|C/-|frameshift_variant	TREM2|p.A180Pfs*9|1|0.3|ENSG00000095970|chr6:41159011-41159011|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	454.217049	906.419545	0.063779	2.897E-05	-0.54934	-0.00024952	-0.48556	-0.00022055	454.21661239333787	17.869	0.58292	17.869	17.66	18.243	0	-0.046905	-8.1005E-05	NaN	32.305	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81449			4553	1461	2293	2293							-0.037408356931450726
DAIAEIRAI	9	Unmodified	_DAIAEIRAI_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.E750Dfs*31|1|0.27|ENSG00000101972|chrX:124066420-124066430|AAAGCAGCTCT/-|frameshift_variant;STAG2|p.L995*|1|0.54|ENSG00000101972|chrX:124083478-124083478|T/-|frameshift_variant;STAG2|p.D515*|1|0.33|ENSG00000101972|chrX:124061778-124061779|AG/-|frameshift_variant;STAG1|p.S637Kfs*4|1|0.27|ENSG00000118007|chr3:136422536-136422537|AC/-|frameshift_variant;STAG1|p.F1146Yfs*11|1|0.33|ENSG00000118007|chr3:136343838-136343841|AAAA/-|frameshift_variant;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2797546386719	2	486.279649	970.544745	0.22921	0.00011146	-0.083754	-4.0728E-05	0.14546	7.0732E-05	486.27964891943424	57.806	0.61078	57.806	57.605	58.216	0					41	21	2	0	0	0	0.0041491	2	13971	13971;14020		93.166	35.444	1	948950			4554	1732	2294	2294	6154;6155	6154					0.05829456443234449
DAIAEIRAI	9	Unmodified	_DAIAEIRAI_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.E750Dfs*31|1|0.27|ENSG00000101972|chrX:124066420-124066430|AAAGCAGCTCT/-|frameshift_variant;STAG2|p.L995*|1|0.54|ENSG00000101972|chrX:124083478-124083478|T/-|frameshift_variant;STAG2|p.D515*|1|0.33|ENSG00000101972|chrX:124061778-124061779|AG/-|frameshift_variant;STAG1|p.S637Kfs*4|1|0.27|ENSG00000118007|chr3:136422536-136422537|AC/-|frameshift_variant;STAG1|p.F1146Yfs*11|1|0.33|ENSG00000118007|chr3:136343838-136343841|AAAA/-|frameshift_variant;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.27978515625	2	486.279649	970.544745	0.28613	0.00013914	-0.38774	-0.00018855	-0.10161	-4.9413E-05	486.2796347412785	57.581	1.0035	57.667	57.465	58.468	0.085621					64	36	3	0	0	0	0.0073901	2	13900	13900;13949		83.429	35.68	1	819680			4555	1732	2294	2294	6156;6157	6156					0.05829456443234449
DAIAEIRAI	9	Unmodified	_DAIAEIRAI_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.E750Dfs*31|1|0.27|ENSG00000101972|chrX:124066420-124066430|AAAGCAGCTCT/-|frameshift_variant;STAG2|p.L995*|1|0.54|ENSG00000101972|chrX:124083478-124083478|T/-|frameshift_variant;STAG2|p.D515*|1|0.33|ENSG00000101972|chrX:124061778-124061779|AG/-|frameshift_variant;STAG1|p.S637Kfs*4|1|0.27|ENSG00000118007|chr3:136422536-136422537|AC/-|frameshift_variant;STAG1|p.F1146Yfs*11|1|0.33|ENSG00000118007|chr3:136343838-136343841|AAAA/-|frameshift_variant;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2797546386719	2	486.279649	970.544745	0.32454	0.00015782	-0.19179	-9.3264E-05	0.13275	6.4555E-05	486.2795722119494	57.896	0.66961	57.879	57.631	58.3	-0.0172					53	24	3	0	0	0	0.0073901	1	14005	14005		83.429	35.68	1	867030			4556	1732	2294	2294	6158	6158					0.05829456443234449
DAIEDLMVV	9	Oxidation (M)	_DAIEDLM(Oxidation (M))VV_		DAIEDLM(1)VV		DAIEDLM(65)VV	0	0	1		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.7498779296875	2	510.749533	1019.48451	0.33952	0.00017341	1.6944	0.0008654	2.0339	0.0010388	510.7496465195045	70.855	0.85893	70.855	70.35	71.209	0					71	30	3	0	0	0	0.019245	2	17895	17895;17964		65.235	38.351	1	689220			4557	2701	2295	2295	6159;6160	6159		335			-0.02445022002166297
DAIEDLMVV	9	Oxidation (M)	_DAIEDLM(Oxidation (M))VV_		DAIEDLM(1)VV		DAIEDLM(65)VV	0	0	1		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.74993896484375	2	510.749533	1019.48451	0.27933	0.00014267	1.7541	0.0008959	2.0334	0.0010386	510.74980966322033	70.824	1.0829	70.884	70.351	71.434	0.060783					81	38	3	0	0	0	0.019245	2	17887	17887;17947		65.235	38.351	1	643810			4558	2701	2295	2295	6161;6162	6161		335			-0.02445022002166297
DAIEDLMVV	9	Oxidation (M)	_DAIEDLM(Oxidation (M))VV_		DAIEDLM(1)VV		DAIEDLM(75)VV	0	0	1		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.7501525878906	2	510.749533	1019.48451	0.33195	0.00016955	1.9952	0.001019	2.3271	0.0011886	510.74980628750427	70.885	1.0511	70.86	70.378	71.429	-0.024872					81	37	4	0	0	0	0.012929	2	17890	17890;17951		74.929	48.045	1	611340			4559	2701	2295	2295	6163;6164	6163		335			-0.02445022002166297
DAIENKTTV	9	Unmodified	_DAIENKTTV_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2926025390625	2	495.758746	989.50294	0.25171	0.00012478	-0.036472	-1.8081E-05	0.21523	0.0001067	495.7586402217598	26.082	0.47476	26.082	25.846	26.321	0					36	16	3	0	0	0	0.17263	1	4253	4253		38.615	3.6827	1	190480			4560	3450	2296	2296	6165	6165					0.007768559640453532
DAIENKTTV	9	Unmodified	_DAIENKTTV_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2926025390625	2	495.758746	989.50294	0.22415	0.00011112	0.080311	3.9815E-05	0.30446	0.00015094	495.75886419387444	26.084	0.59011	26.046	25.871	26.461	-0.038671					41	20	3	0	0	0	0.14306	1	4253	4253		38.615	3.6827	1	211420			4561	3450	2296	2296	6166	6166					0.007768559640453532
DAIHQLGFI	9	Unmodified	_DAIHQLGFI_					0	0	0		ENSG00000211455|ENST00000389032|STK38L;nc|ENSG00000211455|Q9Y2H1-2|STK38L	ENSG00000211455|ENST00000389032|STK38L	ENSG00000211455|ENST00000389032|STK38L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2749328613281	2	507.274367	1012.53418	0.2574	0.00013057	0.92421	0.00046883	1.1816	0.0005994	507.2747250797725	66.881	0.48096	66.965	66.767	67.248	0.083824					27	16	2	0	0	0	0.12642	1	16758	16758		34.402	10.381	1	270260			4562	8327	2297	2297	6167	6167					0.02841473788816984
DAIHQLGFI	9	Unmodified	_DAIHQLGFI_					0	0	0		ENSG00000211455|ENST00000389032|STK38L;nc|ENSG00000211455|Q9Y2H1-2|STK38L	ENSG00000211455|ENST00000389032|STK38L	ENSG00000211455|ENST00000389032|STK38L	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.274367	1012.53418	0.29398	0.00014913	0.42	0.00021306	0.71399	0.00036219	507.2743854891131	67.036	0.50465	67.036	66.717	67.222	0	0.040927	-0.00036068	NaN	34.402	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304550			4563	8327	2297	2297							0.02841473788816984
DAIHQLGFI	9	Unmodified	_DAIHQLGFI_					0	0	0		ENSG00000211455|ENST00000389032|STK38L;nc|ENSG00000211455|Q9Y2H1-2|STK38L	ENSG00000211455|ENST00000389032|STK38L	ENSG00000211455|ENST00000389032|STK38L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.274367	1012.53418	0.099561	5.0505E-05	0.67503	0.00034243	0.77459	0.00039293	507.27453841540904	66.999	0.50037	66.985	66.739	67.239	-0.013596	-0.010179	-0.00010194	NaN	34.402	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272150			4564	8327	2297	2297							0.02841473788816984
DAIILALI	8	Unmodified	_DAIILALI_					0	0	0		nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;ENST00000485324.1_1_X:152958408-152959565:+|nuORF;nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-4|SLC6A8	nc|ENSG00000130821|P48029-4|SLC6A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.2732238769531	2	421.273304	840.532055	0.024226	1.0206E-05	-0.22052	-9.2898E-05	-0.19629	-8.2692E-05	421.273168035526	98.376	1.3588	98.369	98.117	99.476	-0.0068283					307	163	3	0	0	0	0.018305	1	26378	26378		104.31	0	1	789930			4565	3522	2298	2298	6168	6168					0.10541045051002129
DAIILALI	8	Unmodified	_DAIILALI_					0	0	0		nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;ENST00000485324.1_1_X:152958408-152959565:+|nuORF;nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-4|SLC6A8	nc|ENSG00000130821|P48029-4|SLC6A8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	421.273304	840.532055	-0.40957	-0.00017254	0.1739	7.3261E-05	-0.23567	-9.9281E-05	421.2733061369096	98.44	0.69285	98.44	98.204	98.897	0	0.041976	0.00014431	NaN	104.31	172	80	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	498470			4566	3522	2298	2298							0.10541045051002129
DAIILALI	8	Unmodified	_DAIILALI_					0	0	0		nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;ENST00000485324.1_1_X:152958408-152959565:+|nuORF;nc|ENSG00000130821|P48029-2|SLC6A8	nc|ENSG00000130821|P48029-4|SLC6A8	nc|ENSG00000130821|P48029-4|SLC6A8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	421.273304	840.532055	-0.16968	-7.1483E-05	0.034501	1.4534E-05	-0.13518	-5.6949E-05	421.27327467681397	98.324	0.8233	98.385	98.091	98.914	0.061516	-0.013165	2.6856E-05	NaN	104.31	229	97	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	901400			4567	3522	2298	2298							0.10541045051002129
DAIITKASI	9	Unmodified	_DAIITKASI_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.276611328125	2	466.276575	930.538597	0.026784	1.2489E-05	0.03771	1.7583E-05	0.064495	3.0072E-05	466.276523492859	44.229	0.84409	44.229	43.985	44.829	0					61	30	3	0	0	0	0.00019464	2	9778	9778;9824		133.05	54.324	1	2033500			4568	3157	2299	2299	6169;6170	6169					0.07054938211717854
DAIITKASI	9	Unmodified	_DAIITKASI_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2764587402344	2	466.276575	930.538597	0.12979	6.0517E-05	-0.076676	-3.5752E-05	0.053112	2.4765E-05	466.2764877494027	44.12	0.82512	44.197	43.975	44.8	0.077518					68	30	3	0	0	0	0.035405	1	9798	9798		70.332	24.632	1	2549000			4569	3157	2299	2299	6171	6171					0.07054938211717854
DAIITKASI	9	Unmodified	_DAIITKASI_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.27642822265625	2	466.276575	930.538597	0.17721	8.2629E-05	-0.2272	-0.00010594	-0.04999	-2.3309E-05	466.2763947856491	44.116	0.81384	44.2	43.944	44.758	0.083992					63	29	3	0	0	0	0.042824	1	9720	9720		75.761	25.828	1	2342200			4570	3157	2299	2299	6172	6172					0.07054938211717854
DAIITKATI	9	Unmodified	_DAIITKATI_					0	0	0		ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.75341796875	2	473.2844	944.554247	0.31395	0.00014859	0.79284	0.00037524	1.1068	0.00052382	473.2851411298152	45.441	0.34745	45.441	45.266	45.614	0					28	12	3	0	0	0	0.17696	1	10138	10138		36.506	8.8774	1	251340			4571	8577	2300	2300	6173	6173					0.07975224728750163
DAIITKATI	9	Unmodified	_DAIITKATI_					0	0	0		ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7532653808594	2	473.2844	944.554247	0.49457	0.00023407	0.63282	0.0002995	1.1274	0.00053358	473.28505735309506	45.383	0.39656	45.443	45.223	45.619	0.059834					24	13	3	0	0	0	0.17263	1	10155	10155		38.615	17.078	1	210290			4572	8577	2300	2300	6174	6174					0.07975224728750163
DAIITKATI	9	Unmodified	_DAIITKATI_					0	0	0		ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	ENSG00000247746|ENST00000500968|USP51	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.75341796875	2	473.2844	944.554247	0.33844	0.00016018	0.43941	0.00020796	0.77785	0.00036814	473.2848727471186	45.377	0.34821	45.442	45.274	45.623	0.065048					22	12	2	0	0	0	0.17263	1	10101	10101		32.037	10.501	1	245450			4573	8577	2300	2300	6175	6175					0.07975224728750163
DAIKEIAKV	9	Unmodified	_DAIKEIAKV_					0	0	0		ENSG00000117000|ENST00000372771|RLF;RLF|p.D1028Afs*6|1|0.23|ENSG00000117000|chr1:40237785-40237786|AT/-|frameshift_variant	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7978515625	2	493.797675	985.580796	0.48146	0.00023775	-0.27165	-0.00013414	0.20981	0.00010361	493.79745873253194	36.936	0.48533	37.023	36.79	37.275	0.087406					25	17	2	0	0	0	0.11813	1	7569	7569		35.612	7.9835	1	196930			4574	2769	2301	2301	6176	6176					0.08742913620096715
DAIKEIAKV	9	Unmodified	_DAIKEIAKV_					0	0	0		ENSG00000117000|ENST00000372771|RLF;RLF|p.D1028Afs*6|1|0.23|ENSG00000117000|chr1:40237785-40237786|AT/-|frameshift_variant	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.797675	985.580796	0.68642	0.00033895	-0.46599	-0.00023011	0.22043	0.00010885	493.79730180756394	37.033	0.48322	37.033	36.724	37.207	0	0.0085719	-6.7247E-05	NaN	35.612	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205790			4575	2769	2301	2301							0.08742913620096715
DAIKEIAKV	9	Unmodified	_DAIKEIAKV_					0	0	0		ENSG00000117000|ENST00000372771|RLF;RLF|p.D1028Afs*6|1|0.23|ENSG00000117000|chr1:40237785-40237786|AT/-|frameshift_variant	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.797675	985.580796	0.65803	0.00032493	-0.5408	-0.00026705	0.11722	5.7884E-05	493.79736938650956	36.924	0.48377	37.017	36.713	37.197	0.093014	-0.0072902	-0.00014113	NaN	35.612	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201940			4576	2769	2301	2301							0.08742913620096715
DAIKLQLV	8	Unmodified	_DAIKLQLV_					0	0	0		nc|ENSG00000138698|P52306-6|RAP1GDS1;nc|ENSG00000138698|P52306-2|RAP1GDS1;nc|ENSG00000138698|P52306-3|RAP1GDS1;nc|ENSG00000138698|P52306-4|RAP1GDS1;ENSG00000138698|ENST00000408927|RAP1GDS1;nc|ENSG00000138698|P52306-5|RAP1GDS1	nc|ENSG00000138698|P52306-6|RAP1GDS1	nc|ENSG00000138698|P52306-6|RAP1GDS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2813415527344	2	450.28166	898.548768	0.1416	6.3759E-05	-0.32848	-0.00014791	-0.18689	-8.4151E-05	450.2814366563161	59.143	0.61689	59.143	58.891	59.508	0					35	21	2	0	0	0	0.056926	1	14378	14378		74.929	17.458	1	489910			4577	4181	2302	2302	6177	6177					0.09543545936946884
DAIKLQLV	8	Unmodified	_DAIKLQLV_					0	0	0		nc|ENSG00000138698|P52306-6|RAP1GDS1;nc|ENSG00000138698|P52306-2|RAP1GDS1;nc|ENSG00000138698|P52306-3|RAP1GDS1;nc|ENSG00000138698|P52306-4|RAP1GDS1;ENSG00000138698|ENST00000408927|RAP1GDS1;nc|ENSG00000138698|P52306-5|RAP1GDS1	nc|ENSG00000138698|P52306-6|RAP1GDS1	nc|ENSG00000138698|P52306-6|RAP1GDS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2812805175781	2	450.28166	898.548768	0.18864	8.494E-05	-0.26929	-0.00012126	-0.080653	-3.6317E-05	450.2814251792805	59.012	0.72473	59.103	58.792	59.517	0.091305					35	25	2	0	0	0	0.23527	1	14314	14314		47.749	13.646	1	503150			4578	4181	2302	2302	6178	6178					0.09543545936946884
DAIKLQLV	8	Unmodified	_DAIKLQLV_					0	0	0		nc|ENSG00000138698|P52306-6|RAP1GDS1;nc|ENSG00000138698|P52306-2|RAP1GDS1;nc|ENSG00000138698|P52306-3|RAP1GDS1;nc|ENSG00000138698|P52306-4|RAP1GDS1;ENSG00000138698|ENST00000408927|RAP1GDS1;nc|ENSG00000138698|P52306-5|RAP1GDS1	nc|ENSG00000138698|P52306-6|RAP1GDS1	nc|ENSG00000138698|P52306-6|RAP1GDS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2815246582031	2	450.28166	898.548768	0.30984	0.00013952	-0.29584	-0.00013321	0.014008	6.3073E-06	450.2814388920755	59.076	0.53804	59.062	58.831	59.37	-0.014267					39	18	3	0	0	0	0.25582	1	14356	14356		41.84	9.5341	1	465260			4579	4181	2302	2302	6179	6179					0.09543545936946884
DAILARTV	8	Unmodified	_DAILARTV_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.7557067871094	2	429.75581	857.497067	0.030818	1.3244E-05	-0.25646	-0.00011022	-0.22565	-9.6973E-05	429.7557052887915	40.276	1.6624	40.276	39.669	41.331	0					129	60	4	0	0	0	0.0077181	4	8567	8517;8567;8623;8673		122.18	33.225	1	7441800			4580	6599	2303	2303	6180;6181;6182;6183	6181					0.06261802243034253
DAILARTV	8	Unmodified	_DAILARTV_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.7557067871094	2	429.75581	857.497067	0.054275	2.3325E-05	-0.29404	-0.00012637	-0.23977	-0.00010304	429.75568218082395	40.113	1.5286	40.213	39.622	41.151	0.099407					139	55	4	0	0	0	0.0017594	3	8486	8486;8537;8580		134.3	34.497	1	7285200			4581	6599	2303	2303	6184;6185;6186	6184					0.06261802243034253
DAILARTV	8	Unmodified	_DAILARTV_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	429.75581	857.497067	0.16932	7.2765E-05	-0.42632	-0.00018322	-0.25701	-0.00011045	429.7556158880772	40.184	1.4462	40.276	39.662	41.109	0.09267	0.021415	-8.5642E-05	NaN	134.3	132	52	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7381100			4582	6599	2303	2303							0.06261802243034253
DAILATLM	8	Oxidation (M)	_DAILATLM(Oxidation (M))_		DAILATLM(1)		DAILATLM(160)	0	0	1		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.230712890625	2	432.230779	862.447005	0.14114	6.1006E-05	-0.25066	-0.00010834	-0.10951	-4.7335E-05	432.230578105411	64.16	1.6332	64.16	63.557	65.19	0					107	59	3	0	0	0	8.7029E-06	4	15922	15873;15922;15972;16044		161.89	75.773	1	1782100			4583	1578	2304	2304	6187;6188;6189;6190	6188		194			0.010279315229013264
DAILATLM	8	Oxidation (M)	_DAILATLM(Oxidation (M))_		DAILATLM(1)		DAILATLM(160)	0	0	1		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.23065185546875	2	432.230779	862.447005	0.10466	4.5238E-05	-0.25908	-0.00011198	-0.15442	-6.6745E-05	432.2305590914863	64.056	1.9605	64.148	63.647	65.608	0.09288					120	71	3	0	0	0	8.7029E-06	4	15891	15844;15891;15935;16003		161.89	77.722	1	1915400			4584	1578	2304	2304	6191;6192;6193;6194	6192		194			0.010279315229013264
DAILATLM	8	Oxidation (M)	_DAILATLM(Oxidation (M))_		DAILATLM(1)		DAILATLM(160)	0	0	1		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.2306213378906	2	432.230779	862.447005	0.14969	6.4701E-05	-0.32789	-0.00014172	-0.1782	-7.7023E-05	432.2305311467797	64.15	1.564	64.141	63.536	65.1	-0.0095291					113	56	3	0	0	0	8.7029E-06	3	15913	15864;15913;15964		161.89	82.444	1	2007600			4585	1578	2304	2304	6195;6196;6197	6196		194			0.010279315229013264
DAIPGLKI	8	Unmodified	_DAIPGLKI_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.7552185058594	2	413.755278	825.496004	0.01152	4.7664E-06	-0.02139	-8.8504E-06	-0.0098705	-4.084E-06	413.7551911649349	57.602	1.8791	57.602	57.038	58.917	0					154	66	4	0	0	0	0.079438	5	13884	13842;13884;13935;13987;14041		64.236	18.721	1	12620000			4586	3005	2305	2305	6198;6199;6200;6201;6202	6199					0.07627587874128494
DAIPGLKI	8	Unmodified	_DAIPGLKI_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.75518798828125	2	413.755278	825.496004	0.3069	0.00012698	-0.32581	-0.0001348	-0.018906	-7.8224E-06	413.755070717985	57.439	1.7376	57.524	57.132	58.87	0.085617					144	62	4	0	0	0	0.11046	6	13896	13800;13843;13896;13945;13998;14057		58.679	18.166	1	13022000			4587	3005	2305	2305	6203;6204;6205;6206;6207;6208	6205					0.07627587874128494
DAIPGLKI	8	Unmodified	_DAIPGLKI_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.75518798828125	2	413.755278	825.496004	0.107	4.4273E-05	-0.16626	-6.879E-05	-0.059255	-2.4517E-05	413.75515541187764	57.612	1.521	57.595	56.946	58.467	-0.0172					147	55	4	0	0	0	0.027083	5	13882	13838;13882;13924;13967;14020		92.491	44.146	1	14295000			4588	3005	2305	2305	6209;6210;6211;6212;6213	6210					0.07627587874128494
DAIQFEVSI	9	Unmodified	_DAIQFEVSI_					0	0	0		nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF	nc|ENSG00000135636|O75923-15|DYSF	nc|ENSG00000135636|O75923-15|DYSF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2998962402344	2	511.263665	1020.51278	0.46416	0.00023731	0.087647	4.4811E-05	0.5518	0.00028212	511.26371146573	78.829	0.27295	78.888	78.71	78.983	0.058151					18	10	2	0	0	0	0.23693	1	20421	20421		21.59	0	1	107590			4589	3889	2306	2306	6214	6214					0.003340439694284214
DAIRHWRSLQ	10	Unmodified	_DAIRHWRSLQ_					0	0	0		ENST00000470448.5_1_1:217842389-217915342:+|nuORF	ENST00000470448.5_1_1:217842389-217915342:+|nuORF	ENST00000470448.5_1_1:217842389-217915342:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.5638122558594	3	427.898544	1280.6738	-0.03782	-1.6183E-05	3.7117	0.0015882	3.6739	0.0015721	427.89837582928016	40.989	0.92767	41.08	40.529	41.456	0.090252					98	34	5	0	0	0	0.31867	1	8793	8793		7.9454	3.2295	1	637090			4590	10865	2307	2307	6215	6215					0.044692311260405404
DAIRILGI	8	Unmodified	_DAIRILGI_					0	0	0		ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.77410888671875	2	435.774003	869.533452	-0.089657	-3.907E-05	1.3519	0.00058913	1.2622	0.00055006	435.7746086219564	67.232	0.46227	67.232	67.048	67.51	0					40	15	4	0	0	0	0.077335	1	16912	16912		65.235	12.967	1	620470			4591	2035	2308	2308	6216	6216					0.09346679139753178
DAIRILGI	8	Unmodified	_DAIRILGI_					0	0	0		ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	ENSG00000105926|ENST00000222644|PALS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.7742614746094	2	435.774003	869.533452	-0.19875	-8.6612E-05	1.0998	0.00047928	0.90108	0.00039267	435.77459808503437	67.223	0.52664	67.206	67.035	67.562	-0.016304					40	17	4	0	0	0	0.077335	1	16902	16902		65.235	3.8776	1	652760			4592	2035	2308	2308	6217	6217					0.09346679139753178
DAIRLKEI	8	Unmodified	_DAIRLKEI_					0	0	0		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;ENSG00000151746|ENST00000652176|BICD1	nc|ENSG00000185963|Q8TD16|BICD2;nc|ENSG00000151746|Q96G01-4|BICD1	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.29010009765625	2	479.290017	956.565481	0.58378	0.0002798	-0.18723	-8.9738E-05	0.39655	0.00019006	479.28984273648547	37.322	1.0283	37.322	37.063	38.092	0					83	36	4	0	0	0	0.0099863	2	7694	7648;7694		117.76	34.132	1	2258900			4593	7574;4982	2309	2309	6218;6219	6219					0.0854604682289164
DAIRLKEI	8	Unmodified	_DAIRLKEI_					0	0	0		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;ENSG00000151746|ENST00000652176|BICD1	nc|ENSG00000185963|Q8TD16|BICD2;nc|ENSG00000151746|Q96G01-4|BICD1	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.29010009765625	2	479.290017	956.565481	0.30983	0.0001485	0.11254	5.394E-05	0.42237	0.00020244	479.2899628391571	37.231	0.84083	37.319	37.032	37.873	0.08741					80	30	4	0	0	0	0.0012696	2	7649	7649;7702		140.63	23.298	1	2080400			4594	7574;4982	2309	2309	6220;6221	6220					0.0854604682289164
DAIRLKEI	8	Unmodified	_DAIRLKEI_					0	0	0		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2;nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;ENSG00000151746|ENST00000652176|BICD1	nc|ENSG00000185963|Q8TD16|BICD2;nc|ENSG00000151746|Q96G01-4|BICD1	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2901306152344	2	479.290017	956.565481	0.40112	0.00019225	0.030848	1.4785E-05	0.43197	0.00020704	479.289920343741	37.16	1.0224	37.253	37.01	38.032	0.093014					81	37	4	0	0	0	0.0042515	3	7636	7593;7636;7684		128.93	34.132	1	2330100			4595	7574;4982	2309	2309	6222;6223;6224	6223					0.0854604682289164
DAIRQSNQI	9	Unmodified	_DAIRQSNQI_					0	0	0		nc|ENSG00000269335|Q9Y6K9-3|IKBKG;ENSG00000269335|ENST00000594239|IKBKG;nc|ENSG00000269335|Q9Y6K9-2|IKBKG	nc|ENSG00000269335|Q9Y6K9-3|IKBKG	nc|ENSG00000269335|Q9Y6K9-3|IKBKG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7755126953125	2	522.775262	1043.53597	0.3923	0.00020508	0.35632	0.00018628	0.74862	0.00039136	522.7752745642618	26.809	0.97042	26.809	26.296	27.266	0					71	33	3	0	0	0	0.0078933	1	4484	4484		97.741	36.842	1	432620			4596	8689	2310	2310	6225	6225					0.015944828067631533
DAIRQSNQI	9	Unmodified	_DAIRQSNQI_					0	0	0		nc|ENSG00000269335|Q9Y6K9-3|IKBKG;ENSG00000269335|ENST00000594239|IKBKG;nc|ENSG00000269335|Q9Y6K9-2|IKBKG	nc|ENSG00000269335|Q9Y6K9-3|IKBKG	nc|ENSG00000269335|Q9Y6K9-3|IKBKG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7754516601562	2	522.775262	1043.53597	0.37191	0.00019443	0.52619	0.00027508	0.8981	0.0004695	522.7753279565703	26.827	0.65148	26.806	26.536	27.188	-0.021412					57	22	3	0	0	0	0.029232	1	4500	4500		84.522	23.623	1	369580			4597	8689	2310	2310	6226	6226					0.015944828067631533
DAIRQSNQI	9	Unmodified	_DAIRQSNQI_					0	0	0		nc|ENSG00000269335|Q9Y6K9-3|IKBKG;ENSG00000269335|ENST00000594239|IKBKG;nc|ENSG00000269335|Q9Y6K9-2|IKBKG	nc|ENSG00000269335|Q9Y6K9-3|IKBKG	nc|ENSG00000269335|Q9Y6K9-3|IKBKG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.775390625	2	522.775262	1043.53597	0.55529	0.00029029	0.25479	0.0001332	0.81008	0.00042349	522.7753396437145	26.836	0.79492	26.825	26.392	27.187	-0.01156					65	27	3	0	0	0	0.052657	1	4455	4455		75.571	20.322	1	434640			4598	8689	2310	2310	6227	6227					0.015944828067631533
DAIRSLASV	9	Unmodified	_DAIRSLASV_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2641296386719	2	466.263999	930.513445	-0.0060399	-2.8162E-06	-0.2161	-0.00010076	-0.22214	-0.00010358	466.2636758299273	47.253	0.48157	47.306	47.062	47.544	0.052574					29	17	2	0	0	0	0.01909	1	10713	10713		65.474	28.967	1	591080			4599	2136	2311	2311	6228	6228					0.04540883409140406
DAIRSLASV	9	Unmodified	_DAIRSLASV_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	466.263999	930.513445	0.29087	0.00013562	-0.97199	-0.00045321	-0.68113	-0.00031758	466.26329720927185	47.285	0.43484	47.285	47.084	47.519	0	-0.015266	-0.00014848	NaN	65.474	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	530790			4600	2136	2311	2311							0.04540883409140406
DAIRSLASV	9	Unmodified	_DAIRSLASV_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	466.263999	930.513445	0.8449	0.00039395	-1.3179	-0.00061448	-0.47297	-0.00022053	466.26318158876865	47.256	0.53447	47.311	47.064	47.598	0.054371	0.0099676	-0.00047103	NaN	65.474	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	460210			4601	2136	2311	2311							0.04540883409140406
DAIRSSVI	8	Unmodified	_DAIRSSVI_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.9605407714844	2	430.745442	859.476331	0.28169	0.00012134	-0.07643	-3.2922E-05	0.20526	8.8413E-05	430.7453723149434	37.176	0.35647	37.176	36.985	37.342	0					23	12	2	0	0	0	0.30499	1	7619	7619		26.268	3.5319	1	162190			4602	13007	2312	2312	6229	6229					0.04097211863393113
DAIRSSVI	8	Unmodified	_DAIRSSVI_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.9604797363281	2	430.745442	859.476331	0.15863	6.833E-05	0.18173	7.8278E-05	0.34036	0.00014661	430.7454666329437	37.088	0.41247	37.181	36.951	37.363	0.093018					21	14	2	0	0	0	0.28547	1	7590	7590		32.786	3.7041	1	181950			4603	13007	2312	2312	6230	6230					0.04097211863393113
DAIRTSEI	8	Unmodified	_DAIRTSEI_					0	0	0		nc|nan|Q9BWL3-3|C1orf43;nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43	nc|nan|Q9BWL3-3|C1orf43	nc|nan|Q9BWL3-3|C1orf43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.7403869628906	2	452.740357	903.46616	0.29944	0.00013557	0.006339	2.8699E-06	0.30577	0.00013844	452.740253900911	32.721	0.72971	32.721	32.415	33.145	0					61	25	3	0	0	0	0.040925	1	6237	6237		82.529	31.674	1	1335100			4604	4532	2313	2313	6231	6231					0.010566041381480318
DAIRTSEI	8	Unmodified	_DAIRTSEI_					0	0	0		nc|nan|Q9BWL3-3|C1orf43;nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43	nc|nan|Q9BWL3-3|C1orf43	nc|nan|Q9BWL3-3|C1orf43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.7403869628906	2	452.740357	903.46616	0.32746	0.00014825	-0.084205	-3.8123E-05	0.24325	0.00011013	452.7402343646616	32.619	0.80425	32.674	32.395	33.199	0.055309					74	28	4	0	0	0	0.019016	2	6208	6208;6260		103.35	48.58	1	1526900			4605	4532	2313	2313	6232;6233	6232					0.010566041381480318
DAIRTSEI	8	Unmodified	_DAIRTSEI_					0	0	0		nc|nan|Q9BWL3-3|C1orf43;nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43	nc|nan|Q9BWL3-3|C1orf43	nc|nan|Q9BWL3-3|C1orf43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.74041748046875	2	452.740357	903.46616	0.1981	8.9687E-05	0.10953	4.959E-05	0.30763	0.00013928	452.74031578908284	32.652	0.81755	32.706	32.415	33.232	0.054375					75	29	4	0	0	0	0.040925	2	6209	6209;6258		82.529	30.261	1	1292500			4606	4532	2313	2313	6234;6235	6234					0.010566041381480318
DAIRVTKTV	9	Unmodified	_DAIRVTKTV_					0	0	0		ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.80078125	2	501.800749	1001.58694	0.24702	0.00012396	-0.69855	-0.00035053	-0.45153	-0.00022658	501.8005502849955	26.568	0.97066	26.568	26.009	26.979	0					71	33	3	0	0	0	0.13296	1	4430	4430		33.445	11.908	1	583840			4607	2925	2314	2314	6236	6236					0.08621431851611305
DAIRVTKTV	9	Unmodified	_DAIRVTKTV_					0	0	0		ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.8007507324219	2	501.800749	1001.58694	0.26231	0.00013163	-0.60776	-0.00030498	-0.34545	-0.00017335	501.8005269032699	26.555	0.81948	26.516	26.178	26.998	-0.038671					86	28	4	0	0	0	0.14306	1	4375	4375		45.74	3.9002	1	634550			4608	2925	2314	2314	6237	6237					0.08621431851611305
DAIRVTKTV	9	Unmodified	_DAIRVTKTV_					0	0	0		ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.8006896972656	2	501.800749	1001.58694	0.48119	0.00024146	-0.854	-0.00042854	-0.37281	-0.00018708	501.8004361619191	26.558	0.81517	26.536	26.158	26.974	-0.022236					73	28	4	0	0	0	0.081941	1	4387	4387		63.227	13.294	1	620540			4609	2925	2314	2314	6238	6238					0.08621431851611305
DAISSLPTP	9	Unmodified	_DAISSLPTP_					0	0	0		nc|ENSG00000132906|P55211-2|CASP9;nc|ENSG00000132906|P55211-4|CASP9;ENSG00000132906|ENST00000333868|CASP9	nc|ENSG00000132906|P55211-2|CASP9	nc|ENSG00000132906|P55211-2|CASP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.2532653808594	2	450.737283	899.460012	0.047778	2.1535E-05	-0.30265	-0.00013641	-0.25487	-0.00011488	450.7372744354704	59.591	0.54651	59.591	59.241	59.787	0					29	18	2	0	0	0	0.023103	1	14458	14458		81.89	41.933	1	210710			4610	3674	2315	2315	6239	6239					0.006260859066173907
DAITQQNTI	9	Unmodified	_DAITQQNTI_					0	0	0		ENSG00000177425|ENST00000328827|PAWR	ENSG00000177425|ENST00000328827|PAWR	ENSG00000177425|ENST00000328827|PAWR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2563781738281	2	502.256371	1002.49819	0.3156	0.00015851	-0.11555	-5.8036E-05	0.20005	0.00010047	502.2561851221663	41.79	0.41003	41.79	41.675	42.085	0					31	18	2	0	0	0	3.4202E-05	3	9029	9029;9081;9122		151.48	68.951	1	2711100			4611	6986	2316	2316	6240;6241;6242	6240					-0.0029602817870681974
DAITQQNTI	9	Unmodified	_DAITQQNTI_					0	0	0		ENSG00000177425|ENST00000328827|PAWR	ENSG00000177425|ENST00000328827|PAWR	ENSG00000177425|ENST00000328827|PAWR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2566833496094	2	502.256371	1002.49819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.859	1	41.949	41.449	42.449	0.090252								0	0	0	0.0072668	1	9062	9062		84.522	38.782	1				4612	6986	2316	2316	6243	6243					-0.0029602817870681974
DAITQQNTI	9	Unmodified	_DAITQQNTI_					0	0	0		ENSG00000177425|ENST00000328827|PAWR	ENSG00000177425|ENST00000328827|PAWR	ENSG00000177425|ENST00000328827|PAWR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2564392089844	2	502.256371	1002.49819	0.64797	0.00032545	0.52144	0.0002619	1.1694	0.00058734	502.25660979273357	41.592	0.35291	41.689	41.581	41.934	0.096622					22	15	2	0	0	0	0.00010651	1	8971	8971		139.78	61.054	1	2827400			4613	6986	2316	2316	6244	6244					-0.0029602817870681974
DAIVEVTPK	9	Unmodified	_DAIVEVTPK_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8004455566406	2	486.274032	970.533512	-0.028853	-1.403E-05	1.3167	0.00064029	1.2879	0.00062626	486.27479811318074	42.587	0.59172	42.587	42.251	42.842	0					36	21	2	0	0	0	0.24311	1	9191	9191		11.64	0	1	594080			4614	3939	2317	2317	6245	6245					0.04706634349099659
DAIVFVTV	8	Unmodified	_DAIVFVTV_					0	0	0		ENSG00000102970|ENST00000219244|CCL17	ENSG00000102970|ENST00000219244|CCL17	ENSG00000102970|ENST00000219244|CCL17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.7041015625	2	432.247286	862.48002	0.25321	0.00010945	-0.28103	-0.00012147	-0.027814	-1.2022E-05	432.2470206698101	78.282	0.5405	78.34	78.089	78.629	0.058151					29	19	2	0	0	0	0.34039	1	20190	20190		15.847	4.2069	1	163140			4615	1796	2318	2318	6246	6246					0.04327881637243536
DAIVFVTV	8	Unmodified	_DAIVFVTV_					0	0	0		ENSG00000102970|ENST00000219244|CCL17	ENSG00000102970|ENST00000219244|CCL17	ENSG00000102970|ENST00000219244|CCL17	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	432.247286	862.48002	0.31208	0.0001349	-0.32299	-0.00013961	-0.010906	-4.7139E-06	432.24707888840754	78.324	0.58219	78.324	78.062	78.645	0	-0.022904	2.2881E-05	NaN	15.847	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138230			4616	1796	2318	2318							0.04327881637243536
DAIVFVTV	8	Unmodified	_DAIVFVTV_					0	0	0		ENSG00000102970|ENST00000219244|CCL17	ENSG00000102970|ENST00000219244|CCL17	ENSG00000102970|ENST00000219244|CCL17	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	432.247286	862.48002	0.4199	0.0001815	-0.51713	-0.00022353	-0.097224	-4.2025E-05	432.24704109182477	78.407	0.49014	78.376	78.062	78.552	-0.030434	0.029454	-0.00014495	NaN	15.847	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198820			4617	1796	2318	2318							0.04327881637243536
DAKDLYSF	8	Unmodified	_DAKDLYSF_					0	0	0			REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7638854980469	2	479.729458	957.444362	0.59803	0.00028689	-0.99084	-0.00047533	-0.39281	-0.00018844	479.7289198800199	48.57	0.37808	48.615	48.312	48.69	0.044891					19	13	2	0	0	0	0.3366	1	11030	11030		18.135	1.1927	1	176410	+		4618	13608	2319	2319	6247	6247					-0.03606200610420274
DAKDLYSF	8	Unmodified	_DAKDLYSF_					0	0	0			REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	479.729458	957.444362	0.34147	0.00016381	-0.56983	-0.00027336	-0.22836	-0.00010955	479.72909029811603	48.536	0.24961	48.536	48.386	48.636	0	0.0094111	0.00019847	NaN	18.135	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157260	+		4619	13608	2319	2319							-0.03606200610420274
DAKDLYSF	8	Unmodified	_DAKDLYSF_					0	0	0			REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.729458	957.444362	0.45917	0.00022028	-0.5994	-0.00028755	-0.14024	-6.7275E-05	479.72903599274787	48.387	0.32318	48.43	48.32	48.643	0.04332	-0.097104	0.0001701	NaN	18.135	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154670	+		4620	13608	2319	2319							-0.03606200610420274
DAKEFISI	8	Unmodified	_DAKEFISI_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.3185119628906	2	461.74765	921.480748	0.49629	0.00022916	0.51655	0.00023852	1.0128	0.00046768	461.74755428239166	56.35	0.26357	56.35	56.184	56.447	0					12	9	2	0	0	0	0.27906	1	13539	13539		27.629	9.4825	1	227820			4621	3332	2320	2320	6248	6248					0.01686676286283273
DAKFRLIL	8	Unmodified	_DAKFRLIL_					0	0	0		ENST00000531908.5_1_11:17095982-17097186:-|nuORF;ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF	ENST00000531908.5_1_11:17095982-17097186:-|nuORF	ENST00000531908.5_1_11:17095982-17097186:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2504577636719	2	488.302927	974.591301	0.29385	0.00014349	-0.55288	-0.00026997	-0.25903	-0.00012648	488.3027862711181	51.606	0.57955	51.652	51.401	51.981	0.046574					28	20	2	0	0	0	0.34167	1	11990	11990		11.64	6.8843	1	506800			4622	2323	2321	2321	6249	6249					0.10298941065184408
DAKILSNVI	9	Unmodified	_DAKILSNVI_					0	0	0		DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.26513671875	2	486.78985	971.565146	0.75896	0.00036946	-0.73376	-0.00035719	0.025207	1.2271E-05	486.7894182818261	55.991	0.57241	56.062	55.777	56.35	0.070885					29	20	2	0	0	0	0.029232	1	13401	13401		84.522	16.684	1	2639500			4623	261	2322	2322	6250	6250					0.07822627103041668
DAKKLFKAL	9	Unmodified	_DAKKLFKAL_					0	0	0			REV__ENST00000528814.1_1_8:38125880-38126138:-|nuORF	REV__ENST00000528814.1_1_8:38125880-38126138:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3241577148438	2	517.32386	1032.63317	0.4448	0.0002301	-0.18394	-9.5158E-05	0.26085	0.00013495	517.323793739739	43.362	0.68373	43.44	43.206	43.89	0.077515					60	24	4	0	0	0	0.15763	1	9548	9548		29.841	4.4413	1	2334000	+		4624	16390	2323	2323	6251	6251					0.11815496753706611
DAKKLSTI	8	Unmodified	_DAKKLSTI_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.E1876Lfs*12|1|0.03|ENSG00000116641|chr1:62476133-62476134|-/GTGCAATTTTGTTTGAGAAAGA|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.24688720703125	2	438.263468	874.512382	0.15959	6.9941E-05	-1.0443	-0.00045766	-0.88467	-0.00038772	438.2628477138079	20.727	0.51049	20.727	20.57	21.08	0					33	17	2	0	0	0	0.3415	1	2637	2637		13.042	1.4022	1	158060			4625	2734	2324	2324	6252	6252					0.07010669040232642
DAKLDKSQI	9	Unmodified	_DAKLDKSQI_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000425843.1_1_X:120337800-120338163:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2823181152344	2	509.282389	1016.55022	0.094706	4.8232E-05	-0.045009	-2.2922E-05	0.049697	2.531E-05	509.28231475475786	22.798	1.1409	22.798	22.476	23.616	0					60	39	3	0	0	0	0.022205	1	3337	3337		63.227	22.988	1	319100			4626	2285	2325	2325	6253	6253					0.04261135235049096
DAKLDKSQI	9	Unmodified	_DAKLDKSQI_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000425843.1_1_X:120337800-120338163:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2822265625	2	509.282389	1016.55022	0.062835	3.2001E-05	-0.030612	-1.559E-05	0.032222	1.641E-05	509.28232260785427	22.86	1.0644	22.773	22.484	23.548	-0.087608					62	37	4	0	0	0	0.038672	2	3367	3367;3420		57.108	11.368	1	334990			4627	2285	2325	2325	6254;6255	6254					0.04261135235049096
DAKLDKSQI	9	Unmodified	_DAKLDKSQI_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000425843.1_1_X:120337800-120338163:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.28240966796875	2	509.282389	1016.55022	0.17923	9.1279E-05	0.51078	0.00026013	0.69001	0.00035141	509.28223636790364	23.07	0.99917	23.026	22.529	23.528	-0.044867					90	35	4	0	0	0	0.038672	1	3367	3367		57.108	21.495	1	333200			4628	2285	2325	2325	6256	6256					0.04261135235049096
DAKQLTTTI	9	Unmodified	_DAKQLTTTI_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7769470214844	2	495.776939	989.539325	0.083095	4.1197E-05	0.054003	2.6773E-05	0.1371	6.797E-05	495.7769289152362	38.703	0.43919	38.703	38.377	38.816	0					53	15	5	0	0	0	0.00082904	1	8114	8114		124.95	17.853	1	1298500			4629	2395	2326	2326	6257	6257					0.044137328607348536
DAKQLTTTI	9	Unmodified	_DAKQLTTTI_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.77703857421875	2	495.776939	989.539325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.693	1	38.784	38.284	39.284	0.090881								0	0	0	0.0029293	1	8091	8091		91.085	16.885	1				4630	2395	2326	2326	6258	6258					0.044137328607348536
DAKRLIAV	8	Unmodified	_DAKRLIAV_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.2794494628906	2	443.279452	884.544351	0.14706	6.5189E-05	-0.10219	-4.53E-05	0.044867	1.9889E-05	443.27935968058006	33.251	1.4939	33.251	32.924	34.418	0					128	53	4	0	0	0	0.015567	2	6402	6402;6450		108	30.013	1	4606200			4631	6752	2327	2327	6259;6260	6259					0.09746081514037996
DAKRLIAV	8	Unmodified	_DAKRLIAV_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.2794189453125	2	443.279452	884.544351	0.13729	6.0858E-05	-0.20516	-9.0941E-05	-0.067866	-3.0084E-05	443.2793112440656	33.161	1.6379	33.216	32.891	34.529	0.055313					142	58	4	0	0	0	0.035151	2	6377	6377;6428		85.272	27.801	1	4996800			4632	6752	2327	2327	6261;6262	6261					0.09746081514037996
DAKRLIAV	8	Unmodified	_DAKRLIAV_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.2794494628906	2	443.279452	884.544351	0.1377	6.1039E-05	-0.070579	-3.1286E-05	0.06712	2.9753E-05	443.2793714730588	33.158	1.4624	33.212	32.877	34.339	0.054371					124	52	4	0	0	0	0.024266	3	6413	6371;6413;6460		96.285	28.941	1	5070700			4633	6752	2327	2327	6263;6264;6265	6264					0.09746081514037996
DAKRQLEI	8	Unmodified	_DAKRQLEI_					0	0	0		ENSG00000204178|ENST00000374343|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1;nc|ENSG00000204178|Q8N5G2-2|MACO1	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7773742675781	2	486.777274	971.539994	-0.003872	-1.8848E-06	0.17243	8.3936E-05	0.16856	8.2051E-05	486.7773412614177	27.656	0.71358	27.656	27.408	28.121	0					62	24	3	0	0	0	0.1286	1	4708	4708		55.503	9.4818	1	711780			4634	8202	2328	2328	6266	6266					0.053085723004642205
DAKRQLEI	8	Unmodified	_DAKRQLEI_					0	0	0		ENSG00000204178|ENST00000374343|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1;nc|ENSG00000204178|Q8N5G2-2|MACO1	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7772521972656	2	486.777274	971.539994	-0.04819	-2.3458E-05	0.2195	0.00010685	0.17131	8.3389E-05	486.77733142391247	27.653	0.68579	27.632	27.382	28.067	-0.02141					57	23	3	0	0	0	0.2502	1	4752	4752		36.506	0.37917	1	745470			4635	8202	2328	2328	6267	6267					0.053085723004642205
DAKRQLEI	8	Unmodified	_DAKRQLEI_					0	0	0		ENSG00000204178|ENST00000374343|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1;nc|ENSG00000204178|Q8N5G2-2|MACO1	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7773742675781	2	486.777274	971.539994	-0.056675	-2.7588E-05	0.22791	0.00011094	0.17123	8.3353E-05	486.77731309570476	27.675	0.68499	27.664	27.407	28.092	-0.011562					57	23	3	0	0	0	0.10249	1	4736	4736		60.074	14.053	1	744220			4636	8202	2328	2328	6268	6268					0.053085723004642205
DAKSTIVSI	9	Unmodified	_DAKSTIVSI_					0	0	0		ENSG00000166479|ENST00000299608|TMX3;ENST00000578816.1_1_18:66344172-66346774:-|nuORF	ENSG00000166479|ENST00000299608|TMX3	ENSG00000166479|ENST00000299608|TMX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2659606933594	2	467.266207	932.517862	0.15603	7.2908E-05	1.1767	0.00054982	1.3327	0.00062273	467.2669807449001	45.054	0.6853	45.054	44.605	45.291	0					39	24	2	0	0	0	0.011693	1	10054	10054		76.825	16.751	1	604510			4637	6084	2329	2329	6269	6269					0.04890347832053976
DAKSTIVSI	9	Unmodified	_DAKSTIVSI_					0	0	0		ENSG00000166479|ENST00000299608|TMX3;ENST00000578816.1_1_18:66344172-66346774:-|nuORF	ENSG00000166479|ENST00000299608|TMX3	ENSG00000166479|ENST00000299608|TMX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.26605224609375	2	467.266207	932.517862	0.13786	6.4417E-05	-0.28762	-0.0001344	-0.14976	-6.9979E-05	467.26605250641876	44.961	0.5275	45.029	44.791	45.319	0.068569					37	18	3	0	0	0	0.017549	1	10018	10018		67.838	16.208	1	598190			4638	6084	2329	2329	6270	6270					0.04890347832053976
DAKSTIVSI	9	Unmodified	_DAKSTIVSI_					0	0	0		ENSG00000166479|ENST00000299608|TMX3;ENST00000578816.1_1_18:66344172-66346774:-|nuORF	ENSG00000166479|ENST00000299608|TMX3	ENSG00000166479|ENST00000299608|TMX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.74114990234375	2	467.266207	932.517862	0.36389	0.00017003	-0.29816	-0.00013932	0.065733	3.0715E-05	467.2660130069781	44.921	0.56339	44.996	44.749	45.312	0.07505					42	20	3	0	0	0	0.18479	1	10048	10048		34.932	12.196	1	560080			4639	6084	2329	2329	6271	6271					0.04890347832053976
DAKTVNVI	8	Unmodified	_DAKTVNVI_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8882141113281	2	430.247818	858.481082	-0.51436	-0.0002213	0.3445	0.00014822	-0.16986	-7.308E-05	430.24791425775976	34.436	0.47961	34.514	34.249	34.729	0.077377					30	16	3	0	0	0	0.33661	1	6763	6763		19.257	3.4098	1	131710			4640	8062	2330	2330	6272	6272					0.04618096006140604
DAKTVNVI	8	Unmodified	_DAKTVNVI_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	430.247818	858.481082	-1.0014	-0.00043087	1.3496	0.00058065	0.34813	0.00014978	430.24850150517875	34.556	0.46889	34.556	34.306	34.775	0	0.021168	0.00061819	NaN	19.257	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154830			4641	8062	2330	2330							0.04618096006140604
DALAKVTKI	9	Unmodified	_DALAKVTKI_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.80023193359375	2	479.800217	957.585882	0.37021	0.00017763	0.070377	3.3767E-05	0.44059	0.00021139	479.8000787675195	36.775	0.66982	36.775	36.511	37.181	0					65	23	4	0	0	0	0.0042709	1	7527	7527		92.201	46.461	1	935540			4642	8341	2331	2331	6273	6273					0.1053921748269886
DALAKVTKI	9	Unmodified	_DALAKVTKI_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.800217	957.585882	0.36427	0.00017477	-0.03177	-1.5243E-05	0.3325	0.00015953	479.8000867778696	36.681	0.60175	36.768	36.516	37.117	0.087406	0.0080282	-2.3801E-05	NaN	92.201	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	970620			4643	8341	2331	2331							0.1053921748269886
DALAKVTKI	9	Unmodified	_DALAKVTKI_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.800217	957.585882	0.68749	0.00032986	-0.13862	-6.6508E-05	0.54887	0.00026335	479.7999392917472	36.644	0.65596	36.737	36.43	37.086	0.093014	-0.023237	-0.00012633	NaN	92.201	83	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1026600			4644	8341	2331	2331							0.1053921748269886
DALANRVQNTL	11	Unmodified	_DALANRVQNTL_					0	0	0		nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-4|AFF2	nc|ENSG00000155966|P51816-2|AFF2	nc|ENSG00000155966|P51816-2|AFF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.8287963867188	2	607.828026	1213.6415	0.49946	0.00030358	0.13169	8.0047E-05	0.63115	0.00038363	607.8280439549842	32.752	0.38787	32.807	32.645	33.033	0.055309					25	13	2	0	0	0	0.29388	1	6288	6288		22.775	2.3604	1	366200			4645	5209	2332	2332	6274	6274					0.0432239893239057
DALANRVQNTL	11	Unmodified	_DALANRVQNTL_					0	0	0		nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-4|AFF2	nc|ENSG00000155966|P51816-2|AFF2	nc|ENSG00000155966|P51816-2|AFF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.8285522460938	2	607.828026	1213.6415	0.31037	0.00018865	0.45388	0.00027588	0.76425	0.00046453	607.8282403051841	32.815	0.43906	32.869	32.63	33.069	0.054371					26	15	2	0	0	0	0.34858	1	6304	6304		17.863	1.7141	1	341060			4646	5209	2332	2332	6275	6275					0.0432239893239057
DALAQLLTL	9	Unmodified	_DALAQLLTL_					0	0	0		ENSG00000159459|ENST00000290650|UBR1	ENSG00000159459|ENST00000290650|UBR1	ENSG00000159459|ENST00000290650|UBR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.284423828125	2	479.2844	956.554247	0.1323	6.3407E-05	0.32021	0.00015347	0.45251	0.00021688	479.2845363142504	95.653	0.66564	95.731	95.483	96.149	0.077408					94	53	2	0	0	0	0.022205	2	25581	25530;25581		63.227	9.8235	1	446710			4647	5410	2333	2333	6276;6277	6277					0.0742322472875685
DALAQLLTL	9	Unmodified	_DALAQLLTL_					0	0	0		ENSG00000159459|ENST00000290650|UBR1	ENSG00000159459|ENST00000290650|UBR1	ENSG00000159459|ENST00000290650|UBR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2850036621094	2	479.2844	956.554247	0.31382	0.00015041	0.32091	0.00015381	0.63472	0.00030421	479.2844748880129	95.79	0.72988	95.786	95.488	96.217	-0.0038147					100	68	2	0	0	0	0.0040516	2	25624	25584;25624		93.938	19.738	1	304790			4648	5410	2333	2333	6278;6279	6279					0.0742322472875685
DALCCELLL	9	Unmodified	_DALCCELLL_					0	0	0		ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3;ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3042907714844	2	496.743196	991.471839	0.63505	0.00031545	-0.13456	-6.6842E-05	0.50048	0.00024861	496.74286309502656	74.853	0.41691	74.822	74.642	75.059	-0.031487					21	14	2	0	0	0	0.24311	1	19217	19217		11.64	0	1	292550			4649	8599	2334	2334	6280	6280					-0.02423756666053123
DALDHVIDI	9	Unmodified	_DALDHVIDI_					0	0	0		ENST00000459905.5_1_9:139835382-139837220:-|nuORF;ENST00000483559.5_1_9:139835382-139837095:-|nuORF;ENSG00000159069|ENST00000325285|FBXW5	ENST00000459905.5_1_9:139835382-139837220:-|nuORF	ENST00000459905.5_1_9:139835382-139837220:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8054504394531	2	505.761289	1009.50803	0.43212	0.00021855	0.14964	7.5684E-05	0.58176	0.00029423	505.76138370951645	64.71	0.7071	64.71	64.483	65.19	0					67	25	3	0	0	0	0.075169	1	16138	16138		62.573	20.733	1	1994900			4650	5385	2335	2335	6281	6281					0.0036515982666287528
DALDHVIDI	9	Unmodified	_DALDHVIDI_					0	0	0		ENST00000459905.5_1_9:139835382-139837220:-|nuORF;ENST00000483559.5_1_9:139835382-139837095:-|nuORF;ENSG00000159069|ENST00000325285|FBXW5	ENST00000459905.5_1_9:139835382-139837220:-|nuORF	ENST00000459905.5_1_9:139835382-139837220:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.8055114746094	2	505.761289	1009.50803	0.44424	0.00022468	0.18077	9.1429E-05	0.62502	0.00031611	505.7614302610996	64.632	0.85606	64.725	64.471	65.327	0.09288					73	31	3	0	0	0	0.075169	1	16097	16097		53.833	19.431	1	2035000			4651	5385	2335	2335	6282	6282					0.0036515982666287528
DALDHVIDI	9	Unmodified	_DALDHVIDI_					0	0	0		ENST00000459905.5_1_9:139835382-139837220:-|nuORF;ENST00000483559.5_1_9:139835382-139837095:-|nuORF;ENSG00000159069|ENST00000325285|FBXW5	ENST00000459905.5_1_9:139835382-139837220:-|nuORF	ENST00000459905.5_1_9:139835382-139837220:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.805419921875	2	505.761289	1009.50803	0.37292	0.00018861	0.35562	0.00017986	0.72854	0.00036847	505.76146468398144	64.743	0.7327	64.733	64.471	65.203	-0.0095291					66	26	3	0	0	0	0.075169	1	16131	16131		53.833	19.431	1	2027500			4652	5385	2335	2335	6283	6283					0.0036515982666287528
DALDHYKTV	9	Unmodified	_DALDHYKTV_					0	0	0		nc|ENSG00000203485|Q27J81-3|INF2;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2	nc|ENSG00000203485|Q27J81-3|INF2	nc|ENSG00000203485|Q27J81-3|INF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2667846679688	2	531.266739	1060.51892	0.69068	0.00036693	-0.2616	-0.00013898	0.42907	0.00022795	531.2665539459394	32.126	0.48649	32.126	31.982	32.469	0					29	17	2	0	0	0	0.038291	1	6128	6128		57.249	26.613	1	309180			4653	8180	2336	2336	6284	6284					-0.008914377990777211
DALDHYKTV	9	Unmodified	_DALDHYKTV_					0	0	0		nc|ENSG00000203485|Q27J81-3|INF2;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2	nc|ENSG00000203485|Q27J81-3|INF2	nc|ENSG00000203485|Q27J81-3|INF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3090209960938	2	531.266739	1060.51892	0.51692	0.00027462	-0.46132	-0.00024508	0.055604	2.9541E-05	531.2666502431476	32.018	0.53764	32.059	31.89	32.428	0.040989					26	18	2	0	0	0	0.152	1	6040	6040		30.703	12.557	1	274970			4654	8180	2336	2336	6285	6285					-0.008914377990777211
DALDHYKTV	9	Unmodified	_DALDHYKTV_					0	0	0		nc|ENSG00000203485|Q27J81-3|INF2;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2	nc|ENSG00000203485|Q27J81-3|INF2	nc|ENSG00000203485|Q27J81-3|INF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	531.266739	1060.51892	0.66064	0.00035098	0.038252	2.0322E-05	0.69889	0.0003713	531.266754231954	32.087	0.39029	32.129	31.941	32.331	0.042366	0.024706	0.00028731	NaN	57.249	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344170			4655	8180	2336	2336							-0.008914377990777211
DALDKIRLI	9	Unmodified	_DALDKIRLI_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8243408203125	2	528.824224	1055.63389	0.62711	0.00033163	-0.29831	-0.00015775	0.3288	0.00017388	528.8241857848068	57.063	1.5257	57.063	56.744	58.269	0					149	55	5	0	0	0	1.6536E-07	3	13720	13720;13768;13819		173.69	66.499	1	16988000			4656	6099	2337	2337	6286;6287;6288	6286					0.10830291402749026
DALDKIRLI	9	Unmodified	_DALDKIRLI_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.824462890625	2	528.824224	1055.63389	0.43153	0.00022821	-0.13864	-7.3314E-05	0.2929	0.00015489	528.8242792500643	56.94	1.2063	57.019	56.678	57.884	0.078671					131	44	5	0	0	0	4.984E-07	3	13724	13676;13724;13768		160.69	58.133	1	18181000			4657	6099	2337	2337	6289;6290;6291	6290					0.10830291402749026
DALDKIRLI	9	Unmodified	_DALDKIRLI_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8242797851562	2	528.824224	1055.63389	0.48185	0.00025481	-0.18738	-9.9093E-05	0.29447	0.00015572	528.8242612147706	57.113	1.3546	57.094	56.754	58.109	-0.019081					146	49	5	0	0	0	4.984E-07	2	13741	13741;13792		160.69	57.27	1	19496000			4658	6099	2337	2337	6292;6293	6292					0.10830291402749026
DALDRKVNE	9	Unmodified	_DALDRKVNE_					0	0	0		nc|ENSG00000136155|O95171-3|SCEL;nc|ENSG00000136155|O95171-2|SCEL;ENSG00000136155|ENST00000349847|SCEL	nc|ENSG00000136155|O95171-3|SCEL	nc|ENSG00000136155|O95171-3|SCEL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.8038330078125	2	530.275095	1058.53564	0.56845	0.00030143	-2.8246	-0.0014978	-2.2561	-0.0011964	530.2736938118217	57.584	0.49823	57.584	57.299	57.798	0					24	17	2	0	0	0	0.22061	1	13877	13877		18.146	0	1	628920			4659	3948	2338	2338	6294	6294					0.008710630869245506
DALDVANKI	9	Unmodified	_DALDVANKI_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000491601.1_1_17:38595721-38595772:-|nuORF;ENST00000471152.1_2_3:161146917-161147007:-|nuORF;ENST00000482216.1_1_5:120911545-120911773:-|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7640075683594	2	479.763832	957.513111	0.42892	0.00020578	0.025627	1.2295E-05	0.45455	0.00021808	479.7636494641701	48.141	0.64823	48.141	47.934	48.582	0					48	22	3	0	0	0	4.7355E-10	1	10989	10989		191.38	113.23	1	2007900			4660	8055	2339	2339	6295	6295					0.032654636892857525
DALDVANKI	9	Unmodified	_DALDVANKI_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000491601.1_1_17:38595721-38595772:-|nuORF;ENST00000471152.1_2_3:161146917-161147007:-|nuORF;ENST00000482216.1_1_5:120911545-120911773:-|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.763916015625	2	479.763832	957.513111	0.63965	0.00030688	-0.22188	-0.00010645	0.41777	0.00020043	479.76357550544316	48.107	0.72408	48.155	47.968	48.693	0.047523					56	26	3	0	0	0	3.1045E-06	1	10975	10975		149.91	46.166	1	1889400			4661	8055	2339	2339	6296	6296					0.032654636892857525
DALDVANKI	9	Unmodified	_DALDVANKI_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000491601.1_1_17:38595721-38595772:-|nuORF;ENST00000471152.1_2_3:161146917-161147007:-|nuORF;ENST00000482216.1_1_5:120911545-120911773:-|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF	ENSG00000198242|ENST00000422514|RPL23A	ENSG00000198242|ENST00000422514|RPL23A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7637634277344	2	479.763832	957.513111	0.49485	0.00023741	-0.025408	-1.219E-05	0.46944	0.00022522	479.76363736157367	48.094	0.65694	48.137	47.957	48.614	0.043324					55	24	3	0	0	0	4.7355E-10	1	10947	10947		176.84	76.466	1	1658400			4662	8055	2339	2339	6297	6297					0.032654636892857525
DALEASIVI	9	Unmodified	_DALEASIVI_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7607421875	2	465.760758	929.506963	0.11941	5.5615E-05	1.2377	0.00057647	1.3571	0.00063208	465.760679666006	75.048	2.6277	75.048	74.432	77.06	0					127	95	2	0	0	0	0.0042343	1	19277	19277		92.491	32.102	1	976330			4663	4464	2340	2340	6298	6298					0.039389454577644756
DALEASIVI	9	Unmodified	_DALEASIVI_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7775573730469	2	465.760758	929.506963	0.039885	1.8577E-05	1.676	0.00078059	1.7158	0.00079917	465.7608925167998	74.957	1.8642	75.01	74.324	76.188	0.052361					102	67	2	0	0	0	0.00051458	1	19202	19202		115.69	55.302	1	970620			4664	4464	2340	2340	6299	6299					0.039389454577644756
DALEASIVI	9	Unmodified	_DALEASIVI_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.76080322265625	2	465.760758	929.506963	0.43052	0.00020052	1.3875	0.00064623	1.818	0.00084675	465.76069916336064	75.094	2.5342	75.063	74.294	76.828	-0.031479					125	92	2	0	0	0	0.0011947	1	19246	19246		115.69	60.918	1	750950			4665	4464	2340	2340	6300	6300					0.039389454577644756
DALELNQTFD	10	Unmodified	_DALELNQTFD_					0	0	0		nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;MTUS1|p.V630Ifs*18|1|0.07|ENSG00000129422|chr8:17753920-17753921|-/AAGAGATTAT|frameshift_variant;nc|ENSG00000129422|Q9ULD2-5|MTUS1;MTUS1|p.Y843Ifs*2|1|0.27|ENSG00000129422|chr8:17715824-17715824|A/-|frameshift_variant;ENST00000523718.5_1_8:17581004-17613316:-|nuORF	nc|ENSG00000129422|Q9ULD2-2|MTUS1	nc|ENSG00000129422|Q9ULD2-2|MTUS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.2720336914062	2	583.272218	1164.52988	0.51413	0.00029988	-2.773	-0.0016174	-2.2589	-0.0013176	583.27089402154	47.626	0.32081	47.674	47.482	47.803	0.04752					28	11	3	0	0	0	0.19345	1	10861	10861		33.445	13.03	1	404030			4666	3424	2341	2341	6301	6301					-0.0458008021544174
DALELNQTFD	10	Unmodified	_DALELNQTFD_					0	0	0		nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;MTUS1|p.V630Ifs*18|1|0.07|ENSG00000129422|chr8:17753920-17753921|-/AAGAGATTAT|frameshift_variant;nc|ENSG00000129422|Q9ULD2-5|MTUS1;MTUS1|p.Y843Ifs*2|1|0.27|ENSG00000129422|chr8:17715824-17715824|A/-|frameshift_variant;ENST00000523718.5_1_8:17581004-17613316:-|nuORF	nc|ENSG00000129422|Q9ULD2-2|MTUS1	nc|ENSG00000129422|Q9ULD2-2|MTUS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	583.272218	1164.52988	0.56105	0.00032725	-3.1178	-0.0018185	-2.5568	-0.0014913	583.7721610990938	47.661	0.35706	47.661	47.44	47.797	0	-0.022207	-6.5241E-05	NaN	33.445	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397730			4667	3424	2341	2341							-0.0458008021544174
DALELNQTFD	10	Unmodified	_DALELNQTFD_					0	0	0		nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;MTUS1|p.V630Ifs*18|1|0.07|ENSG00000129422|chr8:17753920-17753921|-/AAGAGATTAT|frameshift_variant;nc|ENSG00000129422|Q9ULD2-5|MTUS1;MTUS1|p.Y843Ifs*2|1|0.27|ENSG00000129422|chr8:17715824-17715824|A/-|frameshift_variant;ENST00000523718.5_1_8:17581004-17613316:-|nuORF	nc|ENSG00000129422|Q9ULD2-2|MTUS1	nc|ENSG00000129422|Q9ULD2-2|MTUS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	583.272218	1164.52988	0.64566	0.0003766	-3.1811	-0.0018555	-2.5355	-0.0014789	583.2706888410272	47.671	0.36692	47.714	47.43	47.797	0.04332	0.03141	-0.00013908	NaN	33.445	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412540			4668	3424	2341	2341							-0.0458008021544174
DALFFFVN	8	Unmodified	_DALFFFVN_					0	0	0		ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1;ENST00000411645.1_1_1:205595116-205595278:+|nuORF;nc|ENSG00000279980|Q9BY60|GABARAPL3	ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2637634277344	2	486.744911	971.475269	0.40268	0.000196	-0.46711	-0.00022736	-0.064429	-3.136E-05	486.74513201083704	45.353	0.65063	45.353	45.015	45.666	0					46	23	3	0	0	0	0.31934	1	10156	10156		24.674	1.5255	1	413290			4669	6441	2342	2342	6302	6302					-0.011610025055233564
DALGKLISI	9	Unmodified	_DALGKLISI_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2868347167969	2	465.286943	928.559333	-0.011347	-5.2798E-06	0.028169	1.3107E-05	0.016822	7.827E-06	465.2869163226405	67.589	1.3606	67.589	67.048	68.408	0					118	48	4	0	0	0	3.4202E-05	4	16988	16937;16988;17030;17078		151.48	44.293	1	7006300			4670	1349	2343	2343	6303;6304;6305;6306	6304					0.09219528591370363
DALGKLISI	9	Unmodified	_DALGKLISI_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.286865234375	2	465.286943	928.559333	0.097829	4.5518E-05	-0.1288	-5.993E-05	-0.030973	-1.4411E-05	465.2868411324629	67.512	1.6969	67.59	66.927	68.624	0.078041					130	60	4	0	0	0	3.4202E-05	4	16943	16894;16943;16993;17038		151.48	39.396	1	7399800			4671	1349	2343	2343	6307;6308;6309;6310	6308					0.09219528591370363
DALGKLISI	9	Unmodified	_DALGKLISI_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2868957519531	2	465.286943	928.559333	0.11347	5.2797E-05	-0.070965	-3.3019E-05	0.042507	1.9778E-05	465.28685875499013	67.575	1.4227	67.558	67.009	68.432	-0.016304					122	49	4	0	0	0	0.00010651	4	16972	16924;16972;17021;17067		139.78	40.281	1	6984700			4672	1349	2343	2343	6311;6312;6313;6314	6312					0.09219528591370363
DALGSMLI	8	Oxidation (M)	_DALGSM(Oxidation (M))LI_		DALGSM(1)LI		DALGSM(110)LI	0	0	1		ENST00000509805.5_1_5:69363243-69366626:+|nuORF;nc|ENSG00000205571|Q16637-3|SMN1;ENSG00000205571|ENST00000380743|SMN2;ENSG00000172062|ENST00000380707|SMN1;ENST00000518504.5_1_5:70238322-70242051:+|nuORF;nc|ENSG00000205571|Q16637-4|SMN1;nc|ENSG00000205571|Q16637-2|SMN1	ENST00000509805.5_1_5:69363243-69366626:+|nuORF	ENST00000509805.5_1_5:69363243-69366626:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.2149658203125	2	418.215129	834.415705	0.038353	1.604E-05	-0.18162	-7.5955E-05	-0.14326	-5.9915E-05	418.2149717730127	63.374	0.92826	63.374	63.068	63.997	0					49	33	2	0	0	0	0.011432	1	15704	15704		114.94	33.08	1	474150			4673	6603	2344	2344	6315	6315		762			-0.00812641511208767
DALGSMLI	8	Oxidation (M)	_DALGSM(Oxidation (M))LI_		DALGSM(1)LI		DALGSM(120)LI	0	0	1		ENST00000509805.5_1_5:69363243-69366626:+|nuORF;nc|ENSG00000205571|Q16637-3|SMN1;ENSG00000205571|ENST00000380743|SMN2;ENSG00000172062|ENST00000380707|SMN1;ENST00000518504.5_1_5:70238322-70242051:+|nuORF;nc|ENSG00000205571|Q16637-4|SMN1;nc|ENSG00000205571|Q16637-2|SMN1	ENST00000509805.5_1_5:69363243-69366626:+|nuORF	ENST00000509805.5_1_5:69363243-69366626:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.2148742675781	2	418.215129	834.415705	0.25888	0.00010827	-0.44574	-0.00018641	-0.18686	-7.8148E-05	418.21487678259615	63.331	0.94693	63.426	63.096	64.043	0.095722					58	33	3	0	0	0	0.0072474	2	15677	15677;15731		123.1	33.669	1	562610			4674	6603	2344	2344	6316;6317	6316		762			-0.00812641511208767
DALGSMLI	8	Oxidation (M)	_DALGSM(Oxidation (M))LI_		DALGSM(1)LI		DALGSM(120)LI	0	0	1		ENST00000509805.5_1_5:69363243-69366626:+|nuORF;nc|ENSG00000205571|Q16637-3|SMN1;ENSG00000205571|ENST00000380743|SMN2;ENSG00000172062|ENST00000380707|SMN1;ENST00000518504.5_1_5:70238322-70242051:+|nuORF;nc|ENSG00000205571|Q16637-4|SMN1;nc|ENSG00000205571|Q16637-2|SMN1	ENST00000509805.5_1_5:69363243-69366626:+|nuORF	ENST00000509805.5_1_5:69363243-69366626:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2148132324219	2	418.215129	834.415705	0.2534	0.00010597	-0.53793	-0.00022497	-0.28454	-0.000119	418.2148273610113	63.404	0.74793	63.395	63.104	63.852	-0.0085526					41	26	2	0	0	0	0.0072474	1	15696	15696		123.1	33.669	1	439950			4675	6603	2344	2344	6318	6318		762			-0.00812641511208767
DALIKNFTL	9	Unmodified	_DALIKNFTL_					0	0	0			REV__ENST00000562509.5_1_16:70380771-70390776:+|nuORF	REV__ENST00000562509.5_1_16:70380771-70390776:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2838745117188	2	517.797675	1033.5808	0.31522	0.00016322	-2.2024	-0.0011404	-1.8872	-0.0009772	517.7978219921322	82.031	1.3785	82.007	80.87	82.249	-0.02404					76	58	2	0	0	0	0.2451	1	21221	21221		15.847	1.0089	1	261650	+		4676	22318	2345	2345	6319	6319					0.06534913620089355
DALISLQMV	9	Oxidation (M)	_DALISLQM(Oxidation (M))V_		DALISLQM(1)V		DALISLQM(70)V	0	0	1		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.76904296875	2	503.267893	1004.52123	0.36554	0.00018397	-0.42669	-0.00021474	-0.061144	-3.0772E-05	503.2677017589659	71.049	1.505	71.049	70.24	71.745	0					79	53	2	0	0	0	0.015924	1	18067	18067		70.332	16.499	1	874330			4677	760	2346	2346	6320	6320		97			0.01915274614395912
DALISLQMV	9	Oxidation (M)	_DALISLQM(Oxidation (M))V_		DALISLQM(1)V		DALISLQM(64)V	0	0	1		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.2676696777344	2	503.267893	1004.52123	0.32328	0.00016269	-0.23468	-0.00011811	0.088593	4.4586E-05	503.26785926110745	71.081	1.3848	71.142	70.351	71.736	0.060783					77	49	2	0	0	0	0.020233	3	18045	18035;18045;18068		63.961	22.121	1	890580			4678	760	2346	2346	6321;6322;6323	6322		97			0.01915274614395912
DALISLQMV	9	Oxidation (M)	_DALISLQM(Oxidation (M))V_		DALISLQM(1)V		DALISLQM(54)V	0	0	1		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2676696777344	2	503.267893	1004.52123	0.42164	0.0002122	-0.21261	-0.000107	0.20903	0.0001052	503.26780875742855	71.127	1.5499	71.103	70.245	71.795	-0.024872					82	55	2	0	0	0	0.10058	1	18070	18070		53.833	15.859	1	719130			4679	760	2346	2346	6324	6324		97			0.01915274614395912
DALITHVL	8	Unmodified	_DALITHVL_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B;ENSG00000187758|ENST00000209668|ADH1A	nc|ENSG00000196616|P00325-2|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.25811767578125	2	441.258185	880.501818	0.17335	7.6494E-05	0.30785	0.00013584	0.48121	0.00021234	441.2583249401053	58.793	1.1208	58.793	58.439	59.56	0					77	38	3	0	0	0	4.6475E-06	2	14265	14265;14314		170.4	76.514	1	1207700			4680	7887	2347	2347	6325;6326	6325					0.056786863857951175
DALITHVL	8	Unmodified	_DALITHVL_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B;ENSG00000187758|ENST00000209668|ADH1A	nc|ENSG00000196616|P00325-2|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2581787109375	2	441.258185	880.501818	0.16116	7.1112E-05	0.46801	0.00020651	0.62917	0.00027763	441.2584015307107	58.694	1.126	58.785	58.474	59.6	0.091305					78	39	3	0	0	0	4.6475E-06	1	14229	14229		170.4	76.514	1	1365400			4681	7887	2347	2347	6327	6327					0.056786863857951175
DALITHVL	8	Unmodified	_DALITHVL_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B;ENSG00000187758|ENST00000209668|ADH1A	nc|ENSG00000196616|P00325-2|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2579650878906	2	441.258185	880.501818	0.30218	0.00013334	0.25867	0.00011414	0.56085	0.00024748	441.2583554245207	58.773	1.0951	58.759	58.445	59.54	-0.014267					73	38	3	0	0	0	0.0015052	2	14240	14240;14283		137.59	66.87	1	1254900			4682	7887	2347	2347	6328;6329	6328					0.056786863857951175
DALKEKVI	8	Unmodified	_DALKEKVI_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2792053222656	2	458.279118	914.543683	0.27112	0.00012425	-0.066154	-3.0317E-05	0.20497	9.3933E-05	458.279001816743	29.456	0.94908	29.456	29.218	30.167	0					84	33	4	0	0	0	0.0059985	2	5287	5242;5287		125.53	53.607	1	1587500			4683	6309	2348	2348	6330;6331	6331					0.08299242074338053
DALKEKVI	8	Unmodified	_DALKEKVI_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.27923583984375	2	458.279118	914.543683	0.1508	6.9107E-05	0.18638	8.5413E-05	0.33717	0.00015452	458.2791097739336	29.418	0.98268	29.43	29.161	30.143	0.012266					77	33	4	0	0	0	0.0059985	3	5270	5224;5270;5336		125.53	46.801	1	1699800			4684	6309	2348	2348	6332;6333;6334	6333					0.08299242074338053
DALKEKVI	8	Unmodified	_DALKEKVI_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2791748046875	2	458.279118	914.543683	-0.030317	-1.3894E-05	0.26266	0.00012037	0.23235	0.00010648	458.2791582884779	29.46	1.1587	29.473	29.192	30.351	0.013475					87	39	4	0	0	0	0.0015176	3	5274	5234;5274;5322		137.42	58.696	1	1756600			4685	6309	2348	2348	6335;6336;6337	6336					0.08299242074338053
DALKELQI	8	Unmodified	_DALKELQI_					0	0	0		nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2685546875	2	465.26875	928.522947	0.37608	0.00017498	-0.1819	-8.4635E-05	0.19417	9.0343E-05	465.2686619472821	55.181	0.45916	55.162	55.025	55.484	-0.019077					26	16	2	0	0	0	0.052935	1	13158	13158		76.825	20.648	1	442880			4686	4179	2349	2349	6338	6338					0.05582651694669494
DALKELQI	8	Unmodified	_DALKELQI_					0	0	0		nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	465.26875	928.522947	0.18833	8.7626E-05	-0.043735	-2.0348E-05	0.1446	6.7278E-05	465.2688695370569	55.151	0.45818	55.151	54.891	55.35	0	0.0033805	4.5086E-05	NaN	76.825	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372830			4687	4179	2349	2349							0.05582651694669494
DALKELQI	8	Unmodified	_DALKELQI_					0	0	0		nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	465.26875	928.522947	0.26866	0.000125	0.03719	1.7303E-05	0.30585	0.0001423	465.2686892113887	55.065	0.39978	55.131	54.966	55.366	0.065788	-0.017062	0.00012039	NaN	76.825	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419470			4688	4179	2349	2349							0.05582651694669494
DALKTLSL	8	Unmodified	_DALKTLSL_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;nc|ENSG00000174227|Q5H8A4-4|PIGG;ENST00000507493.1_1_4:514867-515974:+|nuORF;nc|ENSG00000174227|Q5H8A4-6|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.78387451171875	2	430.758018	859.501483	0.036644	1.5785E-05	-0.073277	-3.1564E-05	-0.036633	-1.578E-05	430.7579877014938	53.351	0.52526	53.351	53.148	53.674	0					30	19	2	0	0	0	0.21873	1	12612	12612		49.933	3.912	1	400940			4689	6780	2350	2350	6339	6339					0.06611266665970561
DALKTLSL	8	Unmodified	_DALKTLSL_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;nc|ENSG00000174227|Q5H8A4-4|PIGG;ENST00000507493.1_1_4:514867-515974:+|nuORF;nc|ENSG00000174227|Q5H8A4-6|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.78399658203125	2	430.758018	859.501483	0.02731	1.1764E-05	0.10587	4.5603E-05	0.13318	5.7367E-05	430.7579444468294	53.342	0.49749	53.398	53.141	53.638	0.056259					29	18	2	0	0	0	0.16568	1	12598	12598		41.84	3.8656	1	447380			4690	6780	2350	2350	6340	6340					0.06611266665970561
DALKTLSL	8	Unmodified	_DALKTLSL_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;nc|ENSG00000174227|Q5H8A4-4|PIGG;ENST00000507493.1_1_4:514867-515974:+|nuORF;nc|ENSG00000174227|Q5H8A4-6|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.7579345703125	2	430.758018	859.501483	0.026381	1.1364E-05	0.05725	2.4661E-05	0.083631	3.6025E-05	430.75801749119114	53.441	0.49764	53.431	53.218	53.715	-0.0096092					31	18	2	0	0	0	0.071344	1	12622	12622		68.081	13.307	1	514620			4691	6780	2350	2350	6341	6341					0.06611266665970561
DALKVTFL	8	Unmodified	_DALKVTFL_					0	0	0		ENSG00000212747|ENST00000391440|RTL8B;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000134590|ENST00000257013|RTL8C	ENSG00000212747|ENST00000391440|RTL8B	ENSG00000212747|ENST00000391440|RTL8B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7683410644531	2	453.768386	905.522219	-0.10658	-4.8364E-05	0.30779	0.00013966	0.20121	9.1301E-05	453.76845786650773	65.068	1.3714	65.068	64.781	66.152	0					129	49	4	0	0	0	0.0011578	5	16202	16157;16202;16255;16305;16359		142.08	57.85	1	8734700			4692	3798	2351	2351	6342;6343;6344;6345;6346	6343					0.06567857045604342
DALKVTFL	8	Unmodified	_DALKVTFL_					0	0	0		ENSG00000212747|ENST00000391440|RTL8B;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000134590|ENST00000257013|RTL8C	ENSG00000212747|ENST00000391440|RTL8B	ENSG00000212747|ENST00000391440|RTL8B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7684020996094	2	453.768386	905.522219	-0.006554	-2.974E-06	0.18643	8.4598E-05	0.17988	8.1624E-05	453.7684149319641	64.977	1.1794	65.066	64.742	65.921	0.088882					117	43	4	0	0	0	0.0011578	5	16161	16118;16161;16210;16251;16309		142.08	60.189	1	9071500			4693	3798	2351	2351	6347;6348;6349;6350;6351	6348					0.06567857045604342
DALKVTFL	8	Unmodified	_DALKVTFL_					0	0	0		ENSG00000212747|ENST00000391440|RTL8B;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000134590|ENST00000257013|RTL8C	ENSG00000212747|ENST00000391440|RTL8B	ENSG00000212747|ENST00000391440|RTL8B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.76837158203125	2	453.768386	905.522219	-0.13341	-6.0537E-05	0.32702	0.00014839	0.19361	8.7854E-05	453.7684784149276	65.073	1.3929	65.062	64.75	66.143	-0.01133					124	50	4	0	0	0	0.0011578	4	16211	16160;16211;16259;16306		142.08	71.094	1	9236600			4694	3798	2351	2351	6352;6353;6354;6355	6353					0.06567857045604342
DALKVTVGV	9	Unmodified	_DALKVTVGV_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79827372-79827747:-|nuORF	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.27130126953125	2	451.271293	900.528032	0.27541	0.00012429	0.062488	2.8199E-05	0.3379	0.00015248	451.27125669128645	49.631	0.99854	49.631	49.218	50.217	0					61	36	2	0	0	0	0.00019464	3	11446	11398;11446;11499		133.05	47.78	1	3365600			4695	5405	2352	2352	6356;6357;6358	6357					0.07378955557283007
DALKVTVGV	9	Unmodified	_DALKVTVGV_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79827372-79827747:-|nuORF	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.271240234375	2	451.271293	900.528032	0.18261	8.2406E-05	0.13675	6.1711E-05	0.31936	0.00014412	451.27130480469737	49.607	1.1155	49.651	49.317	50.433	0.044891					68	41	2	0	0	0	7.3453E-05	3	11452	11406;11452;11502		145.13	56.176	1	3349500			4696	5405	2352	2352	6359;6360;6361	6360					0.07378955557283007
DALKVTVGV	9	Unmodified	_DALKVTVGV_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79827372-79827747:-|nuORF	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2712707519531	2	451.271293	900.528032	0.16282	7.3478E-05	0.14185	6.4014E-05	0.30468	0.00013749	451.2712953661732	49.602	1.1041	49.626	49.26	50.364	0.024082					64	40	2	0	0	0	0.0008224	3	11443	11395;11443;11492		125.04	33.958	1	3039000			4697	5405	2352	2352	6362;6363;6364	6363					0.07378955557283007
DALLFSITQ	9	Unmodified	_DALLFSITQ_					0	0	0		FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant;ENSG00000164946|ENST00000380880|FREM1	FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant;ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.29638671875	2	504.274032	1006.53351	-0.065956	-3.326E-05	-3.3203	-0.0016743	-3.3862	-0.0017076	504.77370862976886	13.799	0.30287	13.694	13.513	13.816	-0.10466					12	9	2	0	0	0	0.25843	1	524	524		5.7319	0	1	29260			4698	12345;5905	2353	2353	6365	6365					0.030506343490856125
DALLIHDTV	9	Unmodified	_DALLIHDTV_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58;ENST00000590637.1_1_17:40257054-40259850:-|nuORF;DHX58|p.V436Afs*25|1|0.11|ENSG00000108771|chr17:42105112-42105113|-/GG|frameshift_variant	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.77191162109375	2	498.771657	995.528761	0.36447	0.00018179	0.13477	6.7222E-05	0.49924	0.00024901	498.77169481048594	52.235	0.74493	52.235	51.941	52.686	0					51	26	3	0	0	0	5.6213E-07	2	12267	12216;12267		158.2	100.73	1	1721400			4699	2210	2354	2354	6366;6367	6367					0.03081750206331435
DALLIHDTV	9	Unmodified	_DALLIHDTV_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58;ENST00000590637.1_1_17:40257054-40259850:-|nuORF;DHX58|p.V436Afs*25|1|0.11|ENSG00000108771|chr17:42105112-42105113|-/GG|frameshift_variant	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7720031738281	2	498.771657	995.528761	0.4012	0.00020011	0.085875	4.2832E-05	0.48708	0.00024294	498.7717021158599	52.227	0.75738	52.277	51.9	52.657	0.050575					57	27	3	0	0	0	0.00012782	3	12212	12212;12263;12312		136.33	87.988	1	1431800			4700	2210	2354	2354	6368;6369;6370	6368					0.03081750206331435
DALLIHDTV	9	Unmodified	_DALLIHDTV_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58;ENST00000590637.1_1_17:40257054-40259850:-|nuORF;DHX58|p.V436Afs*25|1|0.11|ENSG00000108771|chr17:42105112-42105113|-/GG|frameshift_variant	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7718505859375	2	498.771657	995.528761	0.17109	8.5336E-05	0.24404	0.00012172	0.41513	0.00020706	498.77185605784547	52.258	0.62359	52.257	51.954	52.578	-0.00081253					37	22	2	0	0	0	7.827E-05	2	12269	12223;12269		144.35	104.39	1	1642600			4701	2210	2354	2354	6371;6372	6372					0.03081750206331435
DALLIIPKV	9	Unmodified	_DALLIIPKV_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF;nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.3208923339844	2	491.320786	980.627018	0.37036	0.00018196	0.060484	2.9717E-05	0.43084	0.00021168	491.32065332888754	71.028	1.2005	71.028	70.683	71.884	0					103	42	4	0	0	0	0.0028626	3	18026	17976;18026;18072		103.35	61.514	1	4611200			4702	4724	2355	2355	6373;6374;6375	6374					0.1359297852217196
DALLIIPKV	9	Unmodified	_DALLIIPKV_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF;nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.3207702636719	2	491.320786	980.627018	0.34781	0.00017088	0.065725	3.2292E-05	0.41353	0.00020318	491.3206650847447	71.02	1.4018	71.081	70.718	72.12	0.060783					107	50	4	0	0	0	0.0042138	2	18011	17962;18011		92.653	58.252	1	4761600			4703	4724	2355	2355	6376;6377	6377					0.1359297852217196
DALLIIPKV	9	Unmodified	_DALLIIPKV_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF;nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.3207702636719	2	491.320786	980.627018	0.42868	0.00021062	-0.065447	-3.2156E-05	0.36324	0.00017847	491.3205961306067	71.091	0.84311	71.066	70.666	71.509	-0.024872					86	30	4	0	0	0	0.0079761	3	17976	17976;18025;18076		82.529	53.448	1	4204200			4704	4724	2355	2355	6378;6379;6380	6378					0.1359297852217196
DALLIQKL	8	Unmodified	_DALLIQKL_					0	0	0		ENSG00000183530|ENST00000327423|PRR14L	ENSG00000183530|ENST00000327423|PRR14L	ENSG00000183530|ENST00000327423|PRR14L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2769470214844	2	457.289485	912.564418	0.20248	9.2593E-05	-0.14364	-6.5683E-05	0.058847	2.691E-05	457.2893976269149	58.588	0.4508	58.588	58.413	58.864	0					25	14	2	0	0	0	0.13814	1	14223	14223		53.833	6.0841	1	270660			4705	7375	2356	2356	6381	6381					0.10463832454001931
DALLIQKL	8	Unmodified	_DALLIQKL_					0	0	0		ENSG00000183530|ENST00000327423|PRR14L	ENSG00000183530|ENST00000327423|PRR14L	ENSG00000183530|ENST00000327423|PRR14L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.27691650390625	2	457.289485	912.564418	0.19199	8.7797E-05	-0.18617	-8.5136E-05	0.0058194	2.6611E-06	457.2894471077839	58.448	0.507	58.539	58.342	58.849	0.091301					26	17	2	0	0	0	0.16041	2	14174	14174;14219		49.933	13.806	1	260980			4706	7375	2356	2356	6382;6383	6382					0.10463832454001931
DALLIQKL	8	Unmodified	_DALLIQKL_					0	0	0		ENSG00000183530|ENST00000327423|PRR14L	ENSG00000183530|ENST00000327423|PRR14L	ENSG00000183530|ENST00000327423|PRR14L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2899169921875	2	457.289485	912.564418	0.43081	0.00019701	-0.30567	-0.00013978	0.12514	5.7227E-05	457.2894338182644	58.654	0.50087	58.639	58.416	58.917	-0.014271					28	17	2	0	0	0	0.088223	2	14245	14212;14245		62.573	14.824	1	262040			4707	7375	2356	2356	6384;6385	6385					0.10463832454001931
DALLKFSHI	9	Unmodified	_DALLKFSHI_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2982177734375	2	522.297842	1042.58113	0.51825	0.00027068	-0.26123	-0.00013644	0.25702	0.00013424	522.2977487523267	52.556	1.3144	52.556	51.914	53.228	0					110	47	4	0	0	0	0.0056456	1	12367	12367		103.42	17.778	1	8457600			4708	4254	2357	2357	6386	6386					0.061543333399413314
DALLKFSHI	9	Unmodified	_DALLKFSHI_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2981567382812	2	522.297842	1042.58113	0.52914	0.00027637	-0.023801	-1.2431E-05	0.50534	0.00026394	522.2977879305648	52.541	1.0931	52.592	52.254	53.347	0.050571					116	39	5	0	0	0	8.0996E-05	1	12351	12351		143.91	58.268	1	9321600			4709	4254	2357	2357	6387	6387					0.061543333399413314
DALLKFSHI	9	Unmodified	_DALLKFSHI_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2980346679688	2	522.297842	1042.58113	0.35719	0.00018656	-0.11155	-5.8263E-05	0.24564	0.0001283	522.2978343154571	52.697	1.3797	52.696	51.982	53.361	-0.00081253					117	50	4	0	0	0	0.00024732	1	12376	12376		132.38	56.619	1	9911600			4710	4254	2357	2357	6388	6388					0.061543333399413314
DALLLVHKD	9	Unmodified	_DALLLVHKD_					0	0	0			REV__ENST00000523224.5_1_8:134059955-134072405:-|nuORF	REV__ENST00000523224.5_1_8:134059955-134072405:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.294921875	2	512.295299	1022.57605	0.25441	0.00013033	-1.2576	-0.00064426	-1.0032	-0.00051393	512.2946753259968	71.144	0.52996	71.205	70.987	71.517	0.060783					32	18	2	0	0	0	0.26612	1	18069	18069		13.906	0	1	824890	+		4711	21926	2358	2358	6389	6389					0.06566029477323809
DALLQMITI	9	Oxidation (M)	_DALLQM(Oxidation (M))ITI_		DALLQM(1)ITI		DALLQM(170)ITI	0	0	1		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2838134765625	2	517.283543	1032.55253	0.34483	0.00017837	-0.12228	-6.3251E-05	0.22255	0.00011512	517.2836793668787	80.181	0.66823	80.181	79.797	80.466	0					82	22	5	0	0	0	1.6536E-07	2	20813	20813;20858		173.69	91.796	1	11635000			4712	6196	2359	2359	6390;6391	6390		729			0.03755847648494637
DALLQMITI	9	Oxidation (M)	_DALLQM(Oxidation (M))ITI_		DALLQM(1)ITI		DALLQM(200)ITI	0	0	1		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2836303710938	2	517.283543	1032.55253	0.34288	0.00017737	-0.021228	-1.0981E-05	0.32165	0.00016639	517.2834915815381	80.691	1.7773	80.691	80.389	82.166	0					219	76	4	0	0	0	5.4465E-12	4	20953	20905;20953;21002;21045		201.57	112.61	1	10850000			4713	6196	2359	2359	6392;6393;6394;6395	6393		729			0.03755847648494637
DALLQMITI	9	Oxidation (M)	_DALLQM(Oxidation (M))ITI_		DALLQM(1)ITI		DALLQM(190)ITI	0	0	1		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.2838745117188	2	517.283543	1032.55253	0.24763	0.0001281	-0.054248	-2.8061E-05	0.19339	0.00010004	517.2837424238031	80.108	0.79391	80.17	79.695	80.489	0.061409					96	27	5	0	0	0	4.8913E-11	4	20784	20740;20784;20826;20869		187.3	105.41	1	13121000			4714	6196	2359	2359	6396;6397;6398;6399	6397		729			0.03755847648494637
DALLQMITI	9	Oxidation (M)	_DALLQM(Oxidation (M))ITI_		DALLQM(1)ITI		DALLQM(200)ITI	0	0	1		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.2835693359375	2	517.283543	1032.55253	0.13056	6.7539E-05	0.33488	0.00017323	0.46544	0.00024077	517.2836385567564	80.585	1.6951	80.65	80.37	82.065	0.065094					240	76	5	0	0	0	5.4465E-12	2	20916	20916;20962		201.57	112.61	1	12327000			4715	6196	2359	2359	6400;6401	6400		729			0.03755847648494637
DALLQMITI	9	Oxidation (M)	_DALLQM(Oxidation (M))ITI_		DALLQM(1)ITI		DALLQM(190)ITI	0	0	1		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2838134765625	2	517.283543	1032.55253	0.2692	0.00013925	-0.090138	-4.6627E-05	0.17906	9.2626E-05	517.283679008656	80.216	0.74609	80.189	79.806	80.552	-0.026825					78	21	5	0	0	0	4.8913E-11	2	20813	20813;20859		187.3	98.343	1	10772000			4716	6196	2359	2359	6402;6403	6402		729			0.03755847648494637
DALLQMITI	9	Oxidation (M)	_DALLQM(Oxidation (M))ITI_		DALLQM(1)ITI		DALLQM(200)ITI	0	0	1		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2833251953125	2	517.283543	1032.55253	0.27055	0.00013995	0.0035723	1.8479E-06	0.27412	0.0001418	517.2834633121043	80.705	1.7021	80.678	80.405	82.107	-0.026817					207	70	5	0	0	0	5.4465E-12	4	20953	20906;20953;21003;21045		201.57	112.61	1	11315000			4717	6196	2359	2359	6404;6405;6406;6407	6405		729			0.03755847648494637
DALLSALSI	9	Unmodified	_DALLSALSI_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.E1055Gfs*20|1|0.19|ENSG00000115306|chr2:54631208-54631224|GAGAGGCCTCCCTGGGA/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.763427734375	2	451.7633	901.512048	0.35477	0.00016027	0.25807	0.00011659	0.61284	0.00027686	451.76329980048547	87.035	0.97562	87.035	86.649	87.625	0					114	40	4	0	0	0	1.8572E-16	3	22919	22919;23006;23021		205.38	40.87	1	2103200			4718	2631	2360	2360	6408;6409;6410	6408					0.057352493203779886
DALLSALSI	9	Unmodified	_DALLSALSI_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.E1055Gfs*20|1|0.19|ENSG00000115306|chr2:54631208-54631224|GAGAGGCCTCCCTGGGA/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7633361816406	2	451.7633	901.512048	0.23414	0.00010578	0.20639	9.324E-05	0.44053	0.00019901	451.76333250075885	86.847	0.80795	86.934	86.63	87.438	0.087097					104	34	4	0	0	0	2.6052E-17	3	22873	22873;22921;22965		223.6	43.594	1	2486800			4719	2631	2360	2360	6411;6412;6413	6411					0.057352493203779886
DALLSALSI	9	Unmodified	_DALLSALSI_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.E1055Gfs*20|1|0.19|ENSG00000115306|chr2:54631208-54631224|GAGAGGCCTCCCTGGGA/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7633972167969	2	451.7633	901.512048	0.32555	0.00014707	0.31165	0.00014079	0.63719	0.00028786	451.76333451016495	86.983	0.92859	86.977	86.67	87.599	-0.0056229					120	41	4	0	0	0	1.8572E-16	2	22903	22903;22952		205.38	40.87	1	2188700			4720	2631	2360	2360	6414;6415	6414					0.057352493203779886
DALMVLEV	8	Oxidation (M)	_DALM(Oxidation (M))VLEV_		DALM(1)VLEV		DALM(46)VLEV	0	0	1		ENSG00000160883|ENST00000292432|HK3	ENSG00000160883|ENST00000292432|HK3	ENSG00000160883|ENST00000292432|HK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.2362976074219	2	453.236061	904.45757	0.070062	3.1755E-05	-0.015363	-6.9631E-06	0.054699	2.4792E-05	453.2360909562238	73.997	0.54787	73.997	73.738	74.286	0					32	17	2	0	0	0	0.18275	1	18949	18949		46.021	11.919	1	593290			4721	5497	2361	2361	6416	6416		661			0.001519141773201227
DALMVLEV	8	Oxidation (M)	_DALM(Oxidation (M))VLEV_		DALM(1)VLEV		DALM(52)VLEV	0	0	1		ENSG00000160883|ENST00000292432|HK3	ENSG00000160883|ENST00000292432|HK3	ENSG00000160883|ENST00000292432|HK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.2364807128906	2	453.236061	904.45757	0.15195	6.8868E-05	-0.18839	-8.5384E-05	-0.03644	-1.6516E-05	453.23594968519575	74.087	0.58923	74.057	73.768	74.358	-0.030663					31	20	2	0	0	0	0.14707	1	18966	18966		52.268	14.294	1	486880			4722	5497	2361	2361	6417	6417		661			0.001519141773201227
DALNIETAI	9	Unmodified	_DALNIETAI_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.25665283203125	2	480.25584	958.497126	0.0099615	4.7841E-06	0.12693	6.0957E-05	0.13689	6.5742E-05	480.25660822334504	69.464	2.5867	69.464	68.675	71.262	0					282	93	5	0	0	0	3.0646E-11	7	17522	17470;17522;17568;17617;17658;17699;18099		193.29	74.4	1	55800000			4723	7313	2362	2362	6418;6419;6420;6421;6422;6423;6424	6419					0.016217574523693656
DALNIETAI	9	Unmodified	_DALNIETAI_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.26361083984375	2	480.25584	958.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.156	1	80.156	79.656	80.656	0								0	0	0	0.18227	1	20819	20819		27.223	5.6863	1				4724	7313	2362	2362	6425	6425					0.016217574523693656
DALNIETAI	9	Unmodified	_DALNIETAI_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2565612792969	2	480.25584	958.497126	0.14893	7.1524E-05	0.059189	2.8426E-05	0.20812	9.995E-05	480.2565132970376	69.431	2.5105	69.497	68.643	71.154	0.066048					293	90	5	0	0	0	3.0646E-11	6	17506	17455;17465;17506;17552;17595;17645		193.29	74.4	1	54083000			4725	7313	2362	2362	6426;6427;6428;6429;6430;6431	6428					0.016217574523693656
DALNIETAI	9	Unmodified	_DALNIETAI_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2635192871094	2	480.25584	958.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.053	1	80.114	79.614	80.614	0.061417								0	0	0	0.16154	1	20776	20776		32.037	4.4087	1				4726	7313	2362	2362	6432	6432					0.016217574523693656
DALNIETAI	9	Unmodified	_DALNIETAI_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2565002441406	2	480.25584	958.497126	0.1611	7.7371E-05	-0.018343	-8.8095E-06	0.14276	6.8561E-05	480.25650865321927	69.489	2.8395	69.467	68.736	71.575	-0.022087					307	102	5	0	0	0	3.0646E-11	7	17519	17472;17476;17519;17568;17617;17666;17994		193.29	74.4	1	58762000			4727	7313	2362	2362	6433;6434;6435;6436;6437;6438;6439	6435					0.016217574523693656
DALNIETAI	9	Unmodified	_DALNIETAI_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2637023925781	2	480.25584	958.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.815	1	79.786	79.286	80.286	-0.028931								0	0	0	0.11009	1	20699	20699		43.982	12.714	1				4728	7313	2362	2362	6440	6440					0.016217574523693656
DALNIREAI	9	Unmodified	_DALNIREAI_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7826232910156	2	507.782556	1013.55056	0.53896	0.00027368	-0.4466	-0.00022678	0.09236	4.6899E-05	507.78224491538606	53.768	0.60835	53.768	53.468	54.076	0					64	22	4	0	0	0	8.0996E-05	2	12749	12703;12749		143.91	44.154	1	2733200			4729	7378	2363	2363	6441;6442	6442					0.04432554954883017
DALNIREAI	9	Unmodified	_DALNIREAI_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7825622558594	2	507.782556	1013.55056	0.17199	8.7334E-05	-0.085946	-4.3642E-05	0.086045	4.3692E-05	507.78238914076917	53.686	0.59912	53.743	53.482	54.081	0.056255					68	22	4	0	0	0	6.549E-06	2	12732	12688;12732		155.95	56.198	1	2829300			4730	7378	2363	2363	6443;6444	6444					0.04432554954883017
DALNIREAI	9	Unmodified	_DALNIREAI_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.7824401855469	2	507.782556	1013.55056	0.40528	0.00020579	-0.44637	-0.00022666	-0.041091	-2.0865E-05	507.7821719981957	53.863	0.56428	53.854	53.585	54.149	-0.0096054					59	20	4	0	0	0	6.0404E-05	2	12727	12727;12775		147.24	57.84	1	3016700			4731	7378	2363	2363	6445;6446	6445					0.04432554954883017
DALNLIDW	8	Unmodified	_DALNLIDW_					0	0	0			REV__nc|ENSG00000008838|O75448-2|MED24	REV__nc|ENSG00000008838|O75448-2|MED24	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2558288574219	2	480.245275	958.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.273	1	70.273	69.773	70.773	0								0	0	0	0.34734	1	17802	17802		15.847	1.0089	1		+		4732	13403	2364	2364	6447	6447					-0.004902078564896328
DALNLIDW	8	Unmodified	_DALNLIDW_					0	0	0			REV__nc|ENSG00000008838|O75448-2|MED24	REV__nc|ENSG00000008838|O75448-2|MED24	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2554626464844	2	480.245275	958.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.445	1	70.445	69.945	70.945	0								0	0	0	0.34734	1	17855	17855		15.847	2.8047	1		+		4733	13403	2364	2364	6448	6448					-0.004902078564896328
DALNLIDW	8	Unmodified	_DALNLIDW_					0	0	0			REV__nc|ENSG00000008838|O75448-2|MED24	REV__nc|ENSG00000008838|O75448-2|MED24	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.255859375	2	480.245275	958.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.916	1	69.982	69.482	70.482	0.066048								0	0	0	0.30279	1	17688	17688		28.487	0	1		+		4734	13403	2364	2364	6449	6449					-0.004902078564896328
DALNQETTYV	10	Unmodified	_DALNQETTYV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.27294921875	2	577.272218	1152.52988	0.16271	9.393E-05	0.64818	0.00037418	0.8109	0.00046811	577.2727802099769	24.314	0.9829	24.275	24.081	25.064	-0.038927					80	33	4	0	0	0	0.37454	1	3744	3744		8.1555	0.24537	1	1048500			4735	8086	2365	2365	6450	6450					-0.04028080215448426
DALNQLFR	8	Unmodified	_DALNQLFR_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7822265625	2	488.764166	975.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.883	1	32.938	32.438	33.438	0.054371								0	0	0	0.34229	1	6311	6311		18.135	1.1927	1				4736	7225	2366	2366	6451	6451					0.025043031289897044
DALNVLLI	8	Unmodified	_DALNVLLI_					0	0	0		ENSG00000010404|ENST00000340855|IDS;nc|ENSG00000241489|P22304-3|IDS;nc|ENSG00000241489|P22304-2|IDS	ENSG00000010404|ENST00000340855|IDS	ENSG00000010404|ENST00000340855|IDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.2604675292969	2	435.768386	869.522219	0.10252	4.4677E-05	-0.59494	-0.00025926	-0.49242	-0.00021458	435.76814145644323	72.654	0.67535	72.624	72.304	72.98	-0.029305					43	23	2	0	0	0	0.32038	1	18553	18553		28.487	3.813	1	172690			4737	424	2367	2367	6452	6452					0.08223857045629757
DALPAHLLV	9	Unmodified	_DALPAHLLV_					0	0	0		ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.31329345703125	2	474.779285	947.544017	0.16556	7.8606E-05	-0.035139	-1.6683E-05	0.13042	6.1922E-05	474.77925943189024	62.286	0.42513	62.286	62.051	62.476	0					24	15	2	0	0	0	0.24311	1	15381	15381		16.942	3.4344	1	143640			4738	8353	2368	2368	6453	6453					0.06814661794180665
DALPAHLLV	9	Unmodified	_DALPAHLLV_					0	0	0		ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.3133239746094	2	474.779285	947.544017	0.15324	7.2756E-05	-0.00082472	-3.9156E-07	0.15242	7.2364E-05	474.7792531175442	62.161	0.41295	62.258	62.058	62.471	0.096989					19	14	2	0	0	0	0.24311	1	15348	15348		11.64	2.2929	1	163280			4739	8353	2368	2368	6454	6454					0.06814661794180665
DALPAHLLV	9	Unmodified	_DALPAHLLV_					0	0	0		ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.3133544921875	2	474.779285	947.544017	0.23943	0.00011368	0.084089	3.9924E-05	0.32352	0.0001536	474.77926485317437	62.178	0.31664	62.169	62.067	62.384	-0.0085564					15	11	2	0	0	0	0.21905	1	15328	15328		23.148	10.617	1	135190			4740	8353	2368	2368	6455	6455					0.06814661794180665
DALPQLCDF	9	Unmodified	_DALPQLCDF_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;DOCK8|p.N1266Ifs*5|1|0.21|ENSG00000107099|chr9:418160-418160|G/-|frameshift_variant	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.7745666503906	2	511.236593	1020.45863	0.30457	0.00015571	0.89408	0.00045709	1.1987	0.00061279	511.23713226488843	58.284	0.44348	58.37	58.162	58.606	0.085617					31	15	3	0	0	0	0.24688	1	14164	14164		14.838	0	1	358770			4741	2110	2369	2369	6456	6456					-0.05077871453784155
DALQEQSL	8	Unmodified	_DALQEQSL_					0	0	0			REV__nc|ENSG00000074047|P10070-3|GLI2	REV__nc|ENSG00000074047|P10070-3|GLI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.7405700683594	2	452.224539	902.434526	0.20558	9.297E-05	0.17173	7.7661E-05	0.37732	0.00017063	452.22448323075133	32.819	0.42538	32.819	32.72	33.145	0					20	14	2	0	0	0	0.33441	1	6330	6330		26.884	0	1	119870	+		4742	21025	2370	2370	6457	6457					-0.020593886158053465
DALQEQSL	8	Unmodified	_DALQEQSL_					0	0	0			REV__nc|ENSG00000074047|P10070-3|GLI2	REV__nc|ENSG00000074047|P10070-3|GLI2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	452.224539	902.434526	0.20558	9.297E-05	0.17173	7.7661E-05	0.37732	0.00017063	452.22448323075133	32.819	0.42538	32.819	32.72	33.145	0	-0.010667	4.9378E-05	NaN	26.884	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119870	+		4743	21025	2370	2370							-0.020593886158053465
DALQILHI	8	Unmodified	_DALQILHI_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1;ENST00000555945.1_1_14:45431624-45465140:+|nuORF;nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1;ENST00000555607.1_1_14:45431624-45475488:+|nuORF;nc|ENSG00000198718|Q9Y4F4-3|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.77154541015625	2	461.77146	921.528367	0.042455	1.9604E-05	-0.23316	-0.00010767	-0.1907	-8.8061E-05	461.77150505227786	70.248	1.5616	70.248	69.428	70.989	0					140	56	4	0	0	0	1.4887E-09	4	17798	17752;17798;17852;17905		187.93	48.386	1	3571700			4744	8107	2371	2371	6458;6459;6460;6461	6459					0.06446375277153038
DALQILHI	8	Unmodified	_DALQILHI_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1;ENST00000555945.1_1_14:45431624-45465140:+|nuORF;nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1;ENST00000555607.1_1_14:45431624-45475488:+|nuORF;nc|ENSG00000198718|Q9Y4F4-3|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.77154541015625	2	461.77146	921.528367	0.062374	2.8803E-05	-0.42805	-0.00019766	-0.36567	-0.00016886	461.7715061729199	70.203	2.118	70.269	68.875	70.993	0.066048					153	75	4	0	0	0	1.4887E-09	3	17792	17741;17792;17844		187.93	48.386	1	3294700			4745	8107	2371	2371	6462;6463;6464	6463					0.06446375277153038
DALQILHI	8	Unmodified	_DALQILHI_					0	0	0		nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1;ENST00000555945.1_1_14:45431624-45465140:+|nuORF;nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1;ENST00000555607.1_1_14:45431624-45475488:+|nuORF;nc|ENSG00000198718|Q9Y4F4-3|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	nc|ENSG00000198718|Q9Y4F4|TOGARAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.7716064453125	2	461.77146	921.528367	0.21308	9.8393E-05	-0.48297	-0.00022302	-0.26989	-0.00012463	461.77143422343255	70.302	1.6533	70.278	69.291	70.944	-0.02372					133	59	4	0	0	0	8.3033E-15	3	17801	17756;17801;17856		205.82	51.353	1	3453300			4746	8107	2371	2371	6465;6466;6467	6466					0.06446375277153038
DALQYLQKV	9	Unmodified	_DALQYLQKV_					0	0	0		ENST00000558686.5_1_15:102506217-102512799:+|nuORF;ENST00000400706.3_1_12:78799-87272:+|nuORF;ENST00000559163.6_1_15:102506277-102512065:+|nuORF;ENST00000559884.5_1_15:102506277-102506794:+|nuORF;ENST00000557932.5_1_15:102506277-102513446:+|nuORF;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1	ENST00000558686.5_1_15:102506217-102512799:+|nuORF	ENST00000558686.5_1_15:102506217-102512799:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3006591796875	2	539.300581	1076.58661	0.36353	0.00019605	-1.7399	-0.00093833	-1.3764	-0.00074228	539.3006194962337	59.313	1.5949	59.313	58.531	60.126	0					116	55	3	0	0	0	0.0032746	1	14421	14421		100.09	54.391	1	1043000			4747	11879	2372	2372	6468	6468					0.05138012131760661
DALQYLQKV	9	Unmodified	_DALQYLQKV_					0	0	0		ENST00000558686.5_1_15:102506217-102512799:+|nuORF;ENST00000400706.3_1_12:78799-87272:+|nuORF;ENST00000559163.6_1_15:102506277-102512065:+|nuORF;ENST00000559884.5_1_15:102506277-102506794:+|nuORF;ENST00000557932.5_1_15:102506277-102513446:+|nuORF;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1	ENST00000558686.5_1_15:102506217-102512799:+|nuORF	ENST00000558686.5_1_15:102506217-102512799:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.3009033203125	2	539.300581	1076.58661	0.40784	0.00021995	-1.4824	-0.00079947	-1.0746	-0.00057952	539.3005130377111	59.18	1.1661	59.271	58.821	59.987	0.091301					105	41	4	0	0	0	0.0032746	1	14362	14362		100.09	56.318	1	1316700			4748	11879	2372	2372	6469	6469					0.05138012131760661
DALQYLQKV	9	Unmodified	_DALQYLQKV_					0	0	0		ENST00000558686.5_1_15:102506217-102512799:+|nuORF;ENST00000400706.3_1_12:78799-87272:+|nuORF;ENST00000559163.6_1_15:102506277-102512065:+|nuORF;ENST00000559884.5_1_15:102506277-102506794:+|nuORF;ENST00000557932.5_1_15:102506277-102513446:+|nuORF;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1	ENST00000558686.5_1_15:102506217-102512799:+|nuORF	ENST00000558686.5_1_15:102506217-102512799:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.3011474609375	2	539.300581	1076.58661	0.65455	0.000353	-1.8823	-0.0010151	-1.2278	-0.00066215	539.3005322355457	59.321	1.0803	59.306	58.831	59.912	-0.014267					93	37	3	0	0	0	0.0045319	1	14406	14406		90.135	44.435	1	1110300			4749	11879	2372	2372	6470	6470					0.05138012131760661
DALRLYLI	8	Unmodified	_DALRLYLI_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7948913574219	2	488.794935	975.575317	0.33712	0.00016478	-0.47019	-0.00022983	-0.13307	-6.5046E-05	488.79459281527255	74.143	2.5779	74.143	73.191	75.769	0					214	90	5	0	0	0	0.077335	2	19016	18967;19016		65.235	18.714	1	14617000			4750	7846	2373	2373	6471;6472	6472					0.08655234828268021
DALRLYLI	8	Unmodified	_DALRLYLI_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7950134277344	2	488.794935	975.575317	0.24596	0.00012022	-0.26987	-0.00013191	-0.023908	-1.1686E-05	488.7946917744176	74.097	2.7447	74.15	73.17	75.915	0.052361					228	98	4	0	0	0	0.063256	3	18977	18931;18977;19023		71.922	19.654	1	14816000			4751	7846	2373	2373	6473;6474;6475	6474					0.08655234828268021
DALRLYLI	8	Unmodified	_DALRLYLI_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.79498291015625	2	488.794935	975.575317	0.35773	0.00017485	-0.42357	-0.00020704	-0.065844	-3.2184E-05	488.79458780734933	74.187	2.6219	74.156	73.208	75.83	-0.030655					195	95	4	0	0	0	0.077335	2	19006	18960;19006		65.235	12.967	1	14235000			4752	7846	2373	2373	6476;6477	6477					0.08655234828268021
DALRMVIL	8	Unmodified	_DALRMVIL_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7888488769531	2	465.775688	929.536823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.699	1	50.699	50.199	51.199	0								0	0	0	0.34229	1	11776	11776		18.135	4.2289	1		+		4753	17816	2374	2374	6478	6478					0.06923605922111165
DALRMVIL	8	Unmodified	_DALRMVIL_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7760314941406	2	465.775688	929.536823	-0.0072346	-3.3697E-06	-0.54173	-0.00025233	-0.54897	-0.0002557	465.77586818072984	45.694	2.4253	45.754	45.282	47.708	0.059837					209	88	4	0	0	0	0.42077	1	10704	10704		15.847	0	1	32189000	+		4754	17816	2374	2374	6479	6479					0.06923605922111165
DALRMVIL	8	Unmodified	_DALRMVIL_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7878723144531	2	465.775688	929.536823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.673	1	50.718	50.218	51.218	0.044891								0	0	0	0.34229	1	11767	11767		18.135	5.6034	1		+		4755	17816	2374	2374	6480	6480					0.06923605922111165
DALRPSVV	8	Unmodified	_DALRPSVV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.7477722167969	2	428.747985	855.481417	0.066488	2.8507E-05	-0.21614	-9.2671E-05	-0.14965	-6.4164E-05	428.7478193395613	38.555	0.80429	38.653	38.378	39.182	0.097527					60	28	3	0	0	0	0.23559	1	8044	8044		38.176	17.722	1	577950			4756	1349	2375	2375	6481	6481					0.04789515725997262
DALRPSVV	8	Unmodified	_DALRPSVV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	428.747985	855.481417	-0.41248	-0.00017685	0.09593	4.113E-05	-0.31655	-0.00013572	428.7480211577351	38.686	0.72884	38.686	38.46	39.189	0	0.0055228	0.00016105	NaN	38.176	52	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	555420			4757	1349	2375	2375							0.04789515725997262
DALRQTASV	9	Unmodified	_DALRQTASV_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7585144042969	2	480.759081	959.503609	0.33766	0.00016233	-0.77144	-0.00037088	-0.43378	-0.00020855	480.7585680612223	29.77	0.61397	29.77	29.58	30.194	0					61	21	4	0	0	0	0.0043179	1	5362	5362		91.085	19.377	1	538480			4758	3619	2376	2376	6482	6482					0.022236954037680334
DALRQTASV	9	Unmodified	_DALRQTASV_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.75872802734375	2	480.759081	959.503609	0.29127	0.00014003	-0.83474	-0.00040131	-0.54347	-0.00026128	480.75859783612856	29.749	0.5873	29.761	29.5	30.088	0.012264					63	19	5	0	0	0	0.0044119	1	5363	5363		91.085	19.377	1	476440			4759	3619	2376	2376	6483	6483					0.022236954037680334
DALRQTASV	9	Unmodified	_DALRQTASV_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7591552734375	2	480.759081	959.503609	0.018309	8.802E-06	-0.56503	-0.00027164	-0.54672	-0.00026284	480.7587065251557	29.765	0.70293	29.778	29.564	30.267	0.013475					60	23	4	0	0	0	0.0083763	1	5366	5366		81.915	10.207	1	537530			4760	3619	2376	2376	6484	6484					0.022236954037680334
DALRSGLTV	9	Unmodified	_DALRSGLTV_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.26416015625	2	466.263999	930.513445	-0.049564	-2.311E-05	0.36798	0.00017158	0.31842	0.00014847	466.26414711421086	43.979	0.9783	43.979	43.681	44.659	0					92	35	4	0	0	0	0.0016724	2	9725	9679;9725		114.19	21.021	1	4177000			4761	4916	2377	2377	6485;6486	6486					0.04540883409151775
DALRSGLTV	9	Unmodified	_DALRSGLTV_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.26409912109375	2	466.263999	930.513445	0.046191	2.1537E-05	0.27393	0.00012772	0.32012	0.00014926	466.2640257002705	43.832	1.0612	43.91	43.599	44.66	0.077518					91	39	4	0	0	0	0.0028032	5	9679	9632;9679;9728;9747;9798		103.82	20.395	1	4363400			4762	4916	2377	2377	6487;6488;6489;6490;6491	6488					0.04540883409151775
DALRSGLTV	9	Unmodified	_DALRSGLTV_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2640686035156	2	466.263999	930.513445	0.22173	0.00010339	-0.0036252	-1.6903E-06	0.21811	0.0001017	466.2639508658719	43.785	0.96103	43.869	43.604	44.565	0.083992					79	35	3	0	0	0	0.0023895	4	9667	9615;9667;9720;9772		107.1	20.768	1	4348200			4763	4916	2377	2377	6492;6493;6494;6495	6493					0.04540883409151775
DALRSILTI	9	Unmodified	_DALRSILTI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3035583496094	2	501.303124	1000.5917	0.38937	0.00019519	-0.12611	-6.322E-05	0.26326	0.00013197	501.3036409293813	71.175	2.7306	71.175	70.847	73.578	0					291	98	4	0	0	0	3.4202E-05	13	18060	18011;18060;18101;18146;18191;18233;18283;18478;18585;18678;18695;18749;18809		151.48	71.884	1	106960000			4764	6138	2378	2378	6496;6497;6498;6499;6500;6501;6502;6503;6504;6505;6506;6507;6508	6497					0.09142315994370165
DALRSILTI	9	Unmodified	_DALRSILTI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2904968261719	2	501.303124	1000.5917	0.71103	0.00035644	0.59797	0.00029976	1.309	0.0006562	501.303371636789	74.777	0.30635	74.777	74.679	74.985	0					16	10	2	0	0	0	0.19083	2	19225	19160;19225		24.991	1.2935	1	147780			4765	6138	2378	2378	6509;6510	6510					0.09142315994370165
DALRSILTI	9	Unmodified	_DALRSILTI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2913818359375	2	501.303124	1000.5917	0.22669	0.00011364	0.3304	0.00016563	0.55709	0.00027927	501.3033098767579	75.475	0.56126	75.475	75.178	75.739	0					25	19	2	0	0	0	0.16685	1	19371	19371		28.495	0.0076673	1	169280			4766	6138	2378	2378	6511	6511					0.09142315994370165
DALRSILTI	9	Unmodified	_DALRSILTI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.30352783203125	2	501.303124	1000.5917	0.34259	0.00017174	-0.11834	-5.9324E-05	0.22425	0.00011242	501.3036436553221	71.141	2.7851	71.202	70.827	73.612	0.060783					326	101	6	0	0	0	3.4202E-05	12	18041	17994;18041;18088;18139;18193;18239;18290;18432;18482;18665;18716;18722		151.48	71.884	1	104580000			4767	6138	2378	2378	6512;6513;6514;6515;6516;6517;6518;6519;6520;6521;6522;6523	6513					0.09142315994370165
DALRSILTI	9	Unmodified	_DALRSILTI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.29132080078125	2	501.303124	1000.5917	0.38087	0.00019093	0.23141	0.00011601	0.61228	0.00030694	501.30315699528825	75.393	0.62503	75.445	75.076	75.701	0.052368					33	22	2	0	0	0	0.16685	1	19373	19373		28.495	0.0076673	1	190270			4768	6138	2378	2378	6524	6524					0.09142315994370165
DALRSILTI	9	Unmodified	_DALRSILTI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.3034973144531	2	501.303124	1000.5917	0.43253	0.00021683	-0.053333	-2.6736E-05	0.3792	0.00019009	501.30364844918194	71.252	2.7828	71.227	70.833	73.616	-0.024872					307	100	5	0	0	0	0.00012746	11	18064	18020;18064;18113;18158;18203;18255;18301;18470;18685;18695;18747		136.39	60.631	1	106900000			4769	6138	2378	2378	6525;6526;6527;6528;6529;6530;6531;6532;6533;6534;6535	6526					0.09142315994370165
DALRSILTI	9	Unmodified	_DALRSILTI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.29071044921875	2	501.303124	1000.5917	0.79333	0.0003977	-0.35042	-0.00017567	0.44291	0.00022203	501.3029198660056	78.463	0.71011	78.432	78.034	78.744	-0.030434					40	26	2	0	0	0	0.25714	2	20295	20192;20295		15.248	1.3424	1	105210			4770	6138	2378	2378	6536;6537	6537					0.09142315994370165
DALSHFPAL	9	Unmodified	_DALSHFPAL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.75347900390625	2	485.753267	969.491981	0.32238	0.0001566	0.11536	5.6035E-05	0.43773	0.00021263	485.753293461558	62.698	0.74052	62.794	62.382	63.123	0.096359					63	26	4	0	0	0	0.0032391	1	15489	15489		100.37	58.277	1	563620			4771	7613	2379	2379	6538	6538					0.006014983804220719
DALSHFPAL	9	Unmodified	_DALSHFPAL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7532653808594	2	485.753267	969.491981	0.26251	0.00012751	0.24725	0.0001201	0.50976	0.00024762	485.7533225263406	62.836	0.80391	62.827	62.413	63.217	-0.0085564					77	29	4	0	0	0	0.0046874	1	15510	15510		88.904	54.801	1	559120			4772	7613	2379	2379	6539	6539					0.006014983804220719
DALSHFPAL	9	Unmodified	_DALSHFPAL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	485.753267	969.491981	0.27545	0.0001338	0.17658	8.5773E-05	0.45203	0.00021958	485.7533258301884	62.838	0.86091	62.838	62.424	63.285	0	0.018348	-2.8209E-06	NaN	100.37	73	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	726780			4773	7613	2379	2379							0.006014983804220719
DALVHLVK	8	Unmodified	_DALVHLVK_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.7738037109375	2	447.774003	893.533452	0.42747	0.00019141	-0.43092	-0.00019296	-0.0034538	-1.5465E-06	447.77375450711327	32.616	0.72507	32.616	32.366	33.091	0					41	25	2	0	0	0	0.14707	1	6276	6276		52.268	8.4101	1	480220	+		4774	17857	2380	2380	6540	6540					0.08242679139755182
DALVLAKM	8	Oxidation (M)	_DALVLAKM(Oxidation (M))_		DALVLAKM(1)		DALVLAKM(110)	0	0	1		ENSG00000136448|ENST00000258960|NMT1;ENST00000587014.1_1_17:43180336-43181457:+|nuORF;nc|ENSG00000136448|P30419-2|NMT1	ENSG00000136448|ENST00000258960|NMT1	ENSG00000136448|ENST00000258960|NMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.74676513671875	2	438.746596	875.478639	0.20005	8.7772E-05	-0.070707	-3.1022E-05	0.12935	5.675E-05	438.7465253295786	36.636	1.0075	36.636	36.307	37.314	0					108	35	5	0	0	0	0.015567	2	7455	7455;7506		108	26.384	1	6063900			4775	3974	2381	2381	6541;6542	6541		497			0.03591924276827285
DALVLAKM	8	Oxidation (M)	_DALVLAKM(Oxidation (M))_		DALVLAKM(1)		DALVLAKM(110)	0	0	1		ENSG00000136448|ENST00000258960|NMT1;ENST00000587014.1_1_17:43180336-43181457:+|nuORF;nc|ENSG00000136448|P30419-2|NMT1	ENSG00000136448|ENST00000258960|NMT1	ENSG00000136448|ENST00000258960|NMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.7466735839844	2	438.746596	875.478639	0.19345	8.4874E-05	-0.09768	-4.2857E-05	0.095766	4.2017E-05	438.74647094987307	36.567	1.0426	36.652	36.287	37.329	0.08469					109	37	4	0	0	0	0.015567	3	7432	7432;7482;7594		108	29.848	1	6386800			4776	3974	2381	2381	6543;6544;6545	6543		497			0.03591924276827285
DALVLAKM	8	Oxidation (M)	_DALVLAKM(Oxidation (M))_		DALVLAKM(1)		DALVLAKM(110)	0	0	1		ENSG00000136448|ENST00000258960|NMT1;ENST00000587014.1_1_17:43180336-43181457:+|nuORF;nc|ENSG00000136448|P30419-2|NMT1	ENSG00000136448|ENST00000258960|NMT1	ENSG00000136448|ENST00000258960|NMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.7467346191406	2	438.746596	875.478639	0.51725	0.00022694	-0.39324	-0.00017253	0.12401	5.441E-05	438.74636557622216	36.516	1.0228	36.602	36.272	37.295	0.086246					110	36	4	0	0	0	0.015567	2	7413	7413;7458		108	26.384	1	6629800			4777	3974	2381	2381	6546;6547	6546		497			0.03591924276827285
DALVLHKV	8	Unmodified	_DALVLHKV_					0	0	0		ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;PBRM1|p.V1336Sfs*48|1|0.44|ENSG00000163939|chr3:52563363-52563363|C/-|frameshift_variant;PBRM1|p.L1349Wfs*35|1|0.38|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;PBRM1|p.P1339Lfs*45|1|0.24|ENSG00000163939|chr3:52563353-52563353|G/-|frameshift_variant;PBRM1|p.Q1346Rfs*38|1|0.15|ENSG00000163939|chr3:52563332-52563332|T/-|frameshift_variant;PBRM1|p.D1403Lfs*18|1|0.2|ENSG00000163939|chr3:52561847-52561848|TC/-|frameshift_variant;PBRM1|p.P1491Rfs*48|1|0.62|ENSG00000163939|chr3:52554861-52554861|G/-|frameshift_variant;PBRM1|p.V1505Lfs*34|1|0.32|ENSG00000163939|chr3:52554823-52554823|G/-|frameshift_variant;PBRM1|p.P1534Hfs*5|1|0.44|ENSG00000163939|chr3:52554732-52554732|G/-|frameshift_variant;PBRM1|p.Q1511Sfs*28|1|0.49|ENSG00000163939|chr3:52554802-52554802|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.L1564Wfs*32|1|0.68|ENSG00000163939|chr3:52550627-52550627|A/-|frameshift_variant;PBRM1|p.F1594Lfs*2|1|0.68|ENSG00000163939|chr3:52550536-52550536|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-9|PBRM1;PBRM1|p.Q1560Nfs*37|1|0.46|ENSG00000163939|chr3:52550749-52550750|-/TT|frameshift_variant;PBRM1|p.S1607Qfs*5|1|0.34|ENSG00000163939|chr3:52550499-52550499|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;PBRM1|p.F1216Yfs*3|1|0.2|ENSG00000163939|chr3:52576585-52576586|-/AT|frameshift_variant;PBRM1|p.K1293Nfs*20|1|0.2|ENSG00000163939|chr3:52563490-52563490|T/-|frameshift_variant;PBRM1|p.V1235Cfs*34|1|0.23|ENSG00000163939|chr3:52564222-52564222|C/-|frameshift_variant;PBRM1|p.E1222Kfs*5|2|0.51|ENSG00000163939|chr3:52576568-52576568|C/-|frameshift_variant;PBRM1|p.E1214Rfs*6|1|0.35|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.I1197Ffs*21|1|0.4|ENSG00000163939|chr3:52576643-52576643|T/-|frameshift_variant;PBRM1|p.I1073Lfs*86|1|0.27|ENSG00000163939|chr3:52586595-52586595|T/-|frameshift_variant;PBRM1|p.M1038Sfs*121|1|0.03|ENSG00000163939|chr3:52587363-52587363|A/-|frameshift_variant;PBRM1|p.P1135Lfs*24|1|0.12|ENSG00000163939|chr3:52579183-52579183|G/-|frameshift_variant;PBRM1|p.N1126Gfs*15|1|0.24|ENSG00000163939|chr3:52586432-52586436|AAGTT/-|frameshift_variant;PBRM1|p.A1104Gfs*3|1|0.37|ENSG00000163939|chr3:52586501-52586502|-/C|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.4|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;PBRM1|p.L993Mfs*20|1|0.61|ENSG00000163939|chr3:52587496-52587499|ACAA/-|frameshift_variant;PBRM1|p.W992Mfs*12|1|0.27|ENSG00000163939|chr3:52587502-52587503|-/T|frameshift_variant;PBRM1|p.K909Nfs*6|1|0.29|ENSG00000163939|chr3:52603573-52603573|T/-|frameshift_variant;PBRM1|p.G1161Afs*57|1|0.31|ENSG00000163939|chr3:52579107-52579107|A/-|frameshift_variant;PBRM1|p.N832Ifs*23|1|0.36|ENSG00000163939|chr3:52609385-52609385|T/-|frameshift_variant;PBRM1|p.R836Lfs*12|1|0.26|ENSG00000163939|chr3:52609352-52609373|TGCTCTTGAAATAAATCAAGCC/-|frameshift_variant;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.Q869Sfs*6|1|0.26|ENSG00000163939|chr3:52603695-52603696|-/A|frameshift_variant;PBRM1|p.Y862*|1|0.5|ENSG00000163939|chr3:52603672-52603715|ACGAATTTTAATAAAAAACTGCTGAAGTTCTACTGCATCTTCAT/-|frameshift_variant;ENST00000480064.1_1_3:52643285-52649409:-|nuORF	ENSG00000163939|ENST00000707071|PBRM1	ENSG00000163939|ENST00000707071|PBRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.7738342285156	2	447.774003	893.533452	0.42747	0.00019141	-0.43092	-0.00019296	-0.0034538	-1.5465E-06	447.77375450711327	32.616	0.72507	32.616	32.366	33.091	0					41	25	2	0	0	0	0.13814	1	6228	6228		53.833	1.5644	1	480220			4778	5762	2382	2382	6548	6548					0.08242679139755182
DALVLHKV	8	Unmodified	_DALVLHKV_					0	0	0		ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;PBRM1|p.V1336Sfs*48|1|0.44|ENSG00000163939|chr3:52563363-52563363|C/-|frameshift_variant;PBRM1|p.L1349Wfs*35|1|0.38|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;PBRM1|p.P1339Lfs*45|1|0.24|ENSG00000163939|chr3:52563353-52563353|G/-|frameshift_variant;PBRM1|p.Q1346Rfs*38|1|0.15|ENSG00000163939|chr3:52563332-52563332|T/-|frameshift_variant;PBRM1|p.D1403Lfs*18|1|0.2|ENSG00000163939|chr3:52561847-52561848|TC/-|frameshift_variant;PBRM1|p.P1491Rfs*48|1|0.62|ENSG00000163939|chr3:52554861-52554861|G/-|frameshift_variant;PBRM1|p.V1505Lfs*34|1|0.32|ENSG00000163939|chr3:52554823-52554823|G/-|frameshift_variant;PBRM1|p.P1534Hfs*5|1|0.44|ENSG00000163939|chr3:52554732-52554732|G/-|frameshift_variant;PBRM1|p.Q1511Sfs*28|1|0.49|ENSG00000163939|chr3:52554802-52554802|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.L1564Wfs*32|1|0.68|ENSG00000163939|chr3:52550627-52550627|A/-|frameshift_variant;PBRM1|p.F1594Lfs*2|1|0.68|ENSG00000163939|chr3:52550536-52550536|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-9|PBRM1;PBRM1|p.Q1560Nfs*37|1|0.46|ENSG00000163939|chr3:52550749-52550750|-/TT|frameshift_variant;PBRM1|p.S1607Qfs*5|1|0.34|ENSG00000163939|chr3:52550499-52550499|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;PBRM1|p.F1216Yfs*3|1|0.2|ENSG00000163939|chr3:52576585-52576586|-/AT|frameshift_variant;PBRM1|p.K1293Nfs*20|1|0.2|ENSG00000163939|chr3:52563490-52563490|T/-|frameshift_variant;PBRM1|p.V1235Cfs*34|1|0.23|ENSG00000163939|chr3:52564222-52564222|C/-|frameshift_variant;PBRM1|p.E1222Kfs*5|2|0.51|ENSG00000163939|chr3:52576568-52576568|C/-|frameshift_variant;PBRM1|p.E1214Rfs*6|1|0.35|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.I1197Ffs*21|1|0.4|ENSG00000163939|chr3:52576643-52576643|T/-|frameshift_variant;PBRM1|p.I1073Lfs*86|1|0.27|ENSG00000163939|chr3:52586595-52586595|T/-|frameshift_variant;PBRM1|p.M1038Sfs*121|1|0.03|ENSG00000163939|chr3:52587363-52587363|A/-|frameshift_variant;PBRM1|p.P1135Lfs*24|1|0.12|ENSG00000163939|chr3:52579183-52579183|G/-|frameshift_variant;PBRM1|p.N1126Gfs*15|1|0.24|ENSG00000163939|chr3:52586432-52586436|AAGTT/-|frameshift_variant;PBRM1|p.A1104Gfs*3|1|0.37|ENSG00000163939|chr3:52586501-52586502|-/C|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.4|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;PBRM1|p.L993Mfs*20|1|0.61|ENSG00000163939|chr3:52587496-52587499|ACAA/-|frameshift_variant;PBRM1|p.W992Mfs*12|1|0.27|ENSG00000163939|chr3:52587502-52587503|-/T|frameshift_variant;PBRM1|p.K909Nfs*6|1|0.29|ENSG00000163939|chr3:52603573-52603573|T/-|frameshift_variant;PBRM1|p.G1161Afs*57|1|0.31|ENSG00000163939|chr3:52579107-52579107|A/-|frameshift_variant;PBRM1|p.N832Ifs*23|1|0.36|ENSG00000163939|chr3:52609385-52609385|T/-|frameshift_variant;PBRM1|p.R836Lfs*12|1|0.26|ENSG00000163939|chr3:52609352-52609373|TGCTCTTGAAATAAATCAAGCC/-|frameshift_variant;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.Q869Sfs*6|1|0.26|ENSG00000163939|chr3:52603695-52603696|-/A|frameshift_variant;PBRM1|p.Y862*|1|0.5|ENSG00000163939|chr3:52603672-52603715|ACGAATTTTAATAAAAAACTGCTGAAGTTCTACTGCATCTTCAT/-|frameshift_variant;ENST00000480064.1_1_3:52643285-52649409:-|nuORF	ENSG00000163939|ENST00000707071|PBRM1	ENSG00000163939|ENST00000707071|PBRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.77386474609375	2	447.774003	893.533452	0.37918	0.00016979	-0.39538	-0.00017704	-0.016194	-7.2512E-06	447.77374509455876	32.509	0.57477	32.565	32.344	32.919	0.055309					36	20	2	0	0	0	0.13814	1	6202	6202		53.833	9.9745	1	433700			4779	5762	2382	2382	6549	6549					0.08242679139755182
DALVLHKV	8	Unmodified	_DALVLHKV_					0	0	0		ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;PBRM1|p.V1336Sfs*48|1|0.44|ENSG00000163939|chr3:52563363-52563363|C/-|frameshift_variant;PBRM1|p.L1349Wfs*35|1|0.38|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;PBRM1|p.P1339Lfs*45|1|0.24|ENSG00000163939|chr3:52563353-52563353|G/-|frameshift_variant;PBRM1|p.Q1346Rfs*38|1|0.15|ENSG00000163939|chr3:52563332-52563332|T/-|frameshift_variant;PBRM1|p.D1403Lfs*18|1|0.2|ENSG00000163939|chr3:52561847-52561848|TC/-|frameshift_variant;PBRM1|p.P1491Rfs*48|1|0.62|ENSG00000163939|chr3:52554861-52554861|G/-|frameshift_variant;PBRM1|p.V1505Lfs*34|1|0.32|ENSG00000163939|chr3:52554823-52554823|G/-|frameshift_variant;PBRM1|p.P1534Hfs*5|1|0.44|ENSG00000163939|chr3:52554732-52554732|G/-|frameshift_variant;PBRM1|p.Q1511Sfs*28|1|0.49|ENSG00000163939|chr3:52554802-52554802|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.L1564Wfs*32|1|0.68|ENSG00000163939|chr3:52550627-52550627|A/-|frameshift_variant;PBRM1|p.F1594Lfs*2|1|0.68|ENSG00000163939|chr3:52550536-52550536|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-9|PBRM1;PBRM1|p.Q1560Nfs*37|1|0.46|ENSG00000163939|chr3:52550749-52550750|-/TT|frameshift_variant;PBRM1|p.S1607Qfs*5|1|0.34|ENSG00000163939|chr3:52550499-52550499|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;PBRM1|p.F1216Yfs*3|1|0.2|ENSG00000163939|chr3:52576585-52576586|-/AT|frameshift_variant;PBRM1|p.K1293Nfs*20|1|0.2|ENSG00000163939|chr3:52563490-52563490|T/-|frameshift_variant;PBRM1|p.V1235Cfs*34|1|0.23|ENSG00000163939|chr3:52564222-52564222|C/-|frameshift_variant;PBRM1|p.E1222Kfs*5|2|0.51|ENSG00000163939|chr3:52576568-52576568|C/-|frameshift_variant;PBRM1|p.E1214Rfs*6|1|0.35|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.I1197Ffs*21|1|0.4|ENSG00000163939|chr3:52576643-52576643|T/-|frameshift_variant;PBRM1|p.I1073Lfs*86|1|0.27|ENSG00000163939|chr3:52586595-52586595|T/-|frameshift_variant;PBRM1|p.M1038Sfs*121|1|0.03|ENSG00000163939|chr3:52587363-52587363|A/-|frameshift_variant;PBRM1|p.P1135Lfs*24|1|0.12|ENSG00000163939|chr3:52579183-52579183|G/-|frameshift_variant;PBRM1|p.N1126Gfs*15|1|0.24|ENSG00000163939|chr3:52586432-52586436|AAGTT/-|frameshift_variant;PBRM1|p.A1104Gfs*3|1|0.37|ENSG00000163939|chr3:52586501-52586502|-/C|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.4|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;PBRM1|p.L993Mfs*20|1|0.61|ENSG00000163939|chr3:52587496-52587499|ACAA/-|frameshift_variant;PBRM1|p.W992Mfs*12|1|0.27|ENSG00000163939|chr3:52587502-52587503|-/T|frameshift_variant;PBRM1|p.K909Nfs*6|1|0.29|ENSG00000163939|chr3:52603573-52603573|T/-|frameshift_variant;PBRM1|p.G1161Afs*57|1|0.31|ENSG00000163939|chr3:52579107-52579107|A/-|frameshift_variant;PBRM1|p.N832Ifs*23|1|0.36|ENSG00000163939|chr3:52609385-52609385|T/-|frameshift_variant;PBRM1|p.R836Lfs*12|1|0.26|ENSG00000163939|chr3:52609352-52609373|TGCTCTTGAAATAAATCAAGCC/-|frameshift_variant;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.Q869Sfs*6|1|0.26|ENSG00000163939|chr3:52603695-52603696|-/A|frameshift_variant;PBRM1|p.Y862*|1|0.5|ENSG00000163939|chr3:52603672-52603715|ACGAATTTTAATAAAAAACTGCTGAAGTTCTACTGCATCTTCAT/-|frameshift_variant;ENST00000480064.1_1_3:52643285-52649409:-|nuORF	ENSG00000163939|ENST00000707071|PBRM1	ENSG00000163939|ENST00000707071|PBRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.7737731933594	2	447.774003	893.533452	0.27677	0.00012393	-0.37096	-0.00016611	-0.09419	-4.2176E-05	447.7737798751612	32.511	0.64904	32.566	32.336	32.985	0.054371					36	23	2	0	0	0	0.13814	1	6204	6204		53.833	1.5644	1	514230			4780	5762	2382	2382	6550	6550					0.08242679139755182
DALVNAVI	8	Unmodified	_DALVNAVI_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.73699951171875	2	407.737086	813.459619	-0.086002	-3.5066E-05	0.17299	7.0535E-05	0.08699	3.5469E-05	407.73703657019206	66.949	0.87719	66.949	66.659	67.536	0					71	30	3	0	0	0	0.050146	2	16806	16760;16806		78.149	13.913	1	977340			4781	2517	2383	2383	6551;6552	6552					0.04542710977432307
DALVNAVI	8	Unmodified	_DALVNAVI_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.7369689941406	2	407.737086	813.459619	-0.025523	-1.0407E-05	0.045707	1.8637E-05	0.020184	8.2299E-06	407.73700490450705	66.822	1.0372	66.906	66.544	67.582	0.083832					82	36	3	0	0	0	0.071344	2	16732	16732;16779		68.081	13.307	1	1039300			4782	2517	2383	2383	6553;6554	6553					0.04542710977432307
DALVNAVI	8	Unmodified	_DALVNAVI_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.7370910644531	2	407.737086	813.459619	-0.17358	-7.0775E-05	0.18791	7.6619E-05	0.014333	5.8439E-06	407.73708825626335	66.963	0.76218	66.949	66.634	67.396	-0.013596					76	26	4	0	0	0	0.050146	2	16786	16737;16786		78.149	13.913	1	1037900			4783	2517	2383	2383	6555;6556	6556					0.04542710977432307
DALVTKNLV	9	Unmodified	_DALVTKNLV_					0	0	0		ENSG00000105202|ENST00000221801|FBL;ENST00000599159.1_1_19:40329665-40336940:-|nuORF	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7901611328125	2	486.78985	971.565146	0.56937	0.00027716	0.11427	5.5627E-05	0.68364	0.00033279	486.78984247767795	46.913	0.81616	46.913	46.703	47.519	0					68	28	3	0	0	0	0.0032746	1	10652	10652		100.09	37.518	1	2525500			4784	1954	2384	2384	6557	6557					0.07822627103053037
DALVTKNLV	9	Unmodified	_DALVTKNLV_					0	0	0		ENSG00000105202|ENST00000221801|FBL;ENST00000599159.1_1_19:40329665-40336940:-|nuORF	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.790283203125	2	486.78985	971.565146	0.31484	0.00015326	0.4117	0.00020041	0.72654	0.00035367	486.7899708021704	46.886	0.97095	46.939	46.655	47.626	0.052574					83	35	3	0	0	0	0.00019464	2	10598	10598;10644		133.05	40.561	1	2610700			4785	1954	2384	2384	6558;6559	6558					0.07822627103053037
DALVTKNLV	9	Unmodified	_DALVTKNLV_					0	0	0		ENSG00000105202|ENST00000221801|FBL;ENST00000599159.1_1_19:40329665-40336940:-|nuORF	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.79022216796875	2	486.78985	971.565146	0.73315	0.00035689	0.005166	2.5148E-06	0.73831	0.0003594	486.78974215359995	46.912	0.91368	46.967	46.709	47.622	0.054375					79	32	3	0	0	0	7.3453E-05	2	10590	10590;10637		145.13	52.638	1	2655600			4786	1954	2384	2384	6560;6561	6560					0.07822627103053037
DAMFSVSFI	9	Oxidation (M)	_DAM(Oxidation (M))FSVSFI_		DAM(1)FSVSFI		DAM(110)FSVSFI	0	0	1		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7390747070312	2	516.738968	1031.46338	0.47932	0.00024768	-0.018224	-9.4168E-06	0.4611	0.00023827	516.7388723038381	82.535	1.1155	82.535	82.138	83.254	0					115	41	4	0	0	0	0.0022761	3	21527	21483;21527;21626		108	54.421	1	1591300			4787	2226	2385	2385	6562;6563;6564	6563		273			-0.05108987311018609
DAMFSVSFI	9	Oxidation (M)	_DAM(Oxidation (M))FSVSFI_		DAM(1)FSVSFI		DAM(110)FSVSFI	0	0	1		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7391967773438	2	516.738968	1031.46338	0.29401	0.00015192	0.20942	0.00010822	0.50343	0.00026014	516.739011906131	82.421	1.2392	82.494	82.109	83.348	0.073097					120	48	4	0	0	0	0.0018995	2	21536	21493;21536		111.29	70.838	1	1922700			4788	2226	2385	2385	6565;6566	6566		273			-0.05108987311018609
DAMFSVSFI	9	Oxidation (M)	_DAM(Oxidation (M))FSVSFI_		DAM(1)FSVSFI		DAM(140)FSVSFI	0	0	1		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7390747070312	2	516.738968	1031.46338	0.36098	0.00018653	0.18975	9.805E-05	0.55073	0.00028458	516.7389423307291	82.536	1.0667	82.516	82.14	83.207	-0.020584					106	40	4	0	0	0	0.00012782	3	21527	21527;21573;21624		136.33	91.926	1	1821300			4789	2226	2385	2385	6567;6568;6569	6567		273			-0.05108987311018609
DAMGMNMI	8	3 Oxidation (M)	_DAM(Oxidation (M))GM(Oxidation (M))NM(Oxidation (M))I_		DAM(1)GM(1)NM(1)I		DAM(82)GM(82)NM(82)I	0	0	3		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.6717529296875	2	465.671914	929.329274	-0.075985	-3.5384E-05	-0.91213	-0.00042475	-0.98812	-0.00046014	465.6718778759811	25.209	1.283	25.209	24.486	25.769	0					100	43	3	0	0	0	0.042854	1	3983	3983		81.613	51.388	1	394580			4790	2476	2386	2386	6570	6570		302;303;304			-0.13821712399737862
DAMGMNMI	8	3 Oxidation (M)	_DAM(Oxidation (M))GM(Oxidation (M))NM(Oxidation (M))I_		DAM(1)GM(1)NM(1)I		DAM(96)GM(96)NM(96)I	0	0	3		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.6719055175781	2	465.671914	929.329274	-0.17946	-8.3571E-05	-1.307	-0.00060863	-1.4865	-0.00069221	465.6719593716102	25.258	1.0757	25.202	24.628	25.704	-0.055931					107	37	4	0	0	0	0.052835	1	3996	3996		96.285	63.979	1	406440			4791	2476	2386	2386	6571	6571		302;303;304			-0.13821712399737862
DAMGMNMI	8	3 Oxidation (M)	_DAM(Oxidation (M))GM(Oxidation (M))NM(Oxidation (M))I_		DAM(1)GM(1)NM(1)I		DAM(82)GM(82)NM(82)I	0	0	3		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.6718444824219	2	465.671914	929.329274	-0.17758	-8.2696E-05	-1.1612	-0.00054072	-1.3387	-0.00062342	465.67193021808174	25.216	1.2496	25.185	24.515	25.764	-0.031408					117	43	4	0	0	0	0.042854	1	3998	3998		81.613	51.388	1	384470			4792	2476	2386	2386	6572	6572		302;303;304			-0.13821712399737862
DAMIMVNI	8	2 Oxidation (M)	_DAM(Oxidation (M))IM(Oxidation (M))VNI_		DAM(1)IM(1)VNI		DAM(52)IM(52)VNI	0	0	2		nc|ENSG00000005469|Q9UKG9-3|CROT;ENSG00000005469|ENST00000331536|CROT;ENST00000479014.1_1_7:87005212-87011518:+|nuORF	nc|ENSG00000005469|Q9UKG9-3|CROT	nc|ENSG00000005469|Q9UKG9-3|CROT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7198486328125	2	469.719721	937.424889	0.068867	3.2348E-05	0.093157	4.3758E-05	0.16202	7.6106E-05	469.7197421903068	58.896	0.53802	58.896	58.624	59.162	0					33	18	2	0	0	0	0.14707	1	14291	14291		52.268	18.166	1	266060			4793	336	2387	2387	6573	6573		30;31			-0.04632616217179475
DAMKYTIVV	9	Oxidation (M)	_DAM(Oxidation (M))KYTIVV_		DAM(1)KYTIVV		DAM(100)KYTIVV	0	0	1		nc|ENSG00000152234|P25705-2|ATP5F1A;nc|ENSG00000152234|P25705-3|ATP5F1A;ENSG00000152234|ENST00000398752|ATP5F1A	nc|ENSG00000152234|P25705-2|ATP5F1A	nc|ENSG00000152234|P25705-2|ATP5F1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2760620117188	2	528.275718	1054.53688	0.60799	0.00032119	-4.0721	-0.0021512	-3.4641	-0.00183	528.2757743526099	48.875	1.8167	48.875	48.106	49.923	0					183	65	5	0	0	0	0.0032746	3	11244	11200;11244;11295		100.09	49.236	1	8462800			4794	5008	2388	2388	6574;6575;6576	6575		618			0.011795611314482812
DAMKYTIVV	9	Oxidation (M)	_DAM(Oxidation (M))KYTIVV_		DAM(1)KYTIVV		DAM(94)KYTIVV	0	0	1		nc|ENSG00000152234|P25705-2|ATP5F1A;nc|ENSG00000152234|P25705-3|ATP5F1A;ENSG00000152234|ENST00000398752|ATP5F1A	nc|ENSG00000152234|P25705-2|ATP5F1A	nc|ENSG00000152234|P25705-2|ATP5F1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2761840820312	2	528.275718	1054.53688	0.48478	0.0002561	-3.6395	-0.0019227	-3.1547	-0.0016666	528.2758357670008	48.903	1.1745	48.948	48.546	49.721	0.044891					157	42	5	0	0	0	0.0040516	3	11243	11201;11243;11289		93.938	45.592	1	8185200			4795	5008	2388	2388	6577;6578;6579	6578		618			0.011795611314482812
DAMKYTIVV	9	Oxidation (M)	_DAM(Oxidation (M))KYTIVV_		DAM(1)KYTIVV		DAM(81)KYTIVV	0	0	1		nc|ENSG00000152234|P25705-2|ATP5F1A;nc|ENSG00000152234|P25705-3|ATP5F1A;ENSG00000152234|ENST00000398752|ATP5F1A	nc|ENSG00000152234|P25705-2|ATP5F1A	nc|ENSG00000152234|P25705-2|ATP5F1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2760620117188	2	528.275718	1054.53688	0.39678	0.00020961	-3.7498	-0.0019809	-3.353	-0.0017713	528.2758979214666	48.833	1.3394	48.865	48.497	49.837	0.032043					167	48	5	0	0	0	0.0091837	3	11212	11174;11212;11258		80.676	38.581	1	8624700			4796	5008	2388	2388	6580;6581;6582	6581		618			0.011795611314482812
DAMRLYYV	8	Oxidation (M)	_DAM(Oxidation (M))RLYYV_		DAM(1)RLYYV		DAM(65)RLYYV	0	0	1		ENST00000592962.5_1_19:36604659-36605276:-|nuORF;ENST00000589591.5_1_19:36604659-36605638:-|nuORF;ENSG00000105258|ENST00000221859|POLR2I;ENST00000586439.1_1_19:36604659-36605969:-|nuORF	ENST00000592962.5_1_19:36604659-36605276:-|nuORF	ENST00000592962.5_1_19:36604659-36605276:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.7525634765625	2	523.75241	1045.49027	0.78361	0.00041042	-0.52101	-0.00027288	0.2626	0.00013754	523.7520742514762	47.268	0.81081	47.268	46.961	47.771	0					82	28	4	0	0	0	0.077335	3	10726	10679;10726;10784		65.235	42.087	1	3830700			4797	1960	2389	2389	6583;6584;6585	6584		239			-0.030658786998628784
DAMRLYYV	8	Oxidation (M)	_DAM(Oxidation (M))RLYYV_		DAM(1)RLYYV		DAM(65)RLYYV	0	0	1		ENST00000592962.5_1_19:36604659-36605276:-|nuORF;ENST00000589591.5_1_19:36604659-36605638:-|nuORF;ENSG00000105258|ENST00000221859|POLR2I;ENST00000586439.1_1_19:36604659-36605969:-|nuORF	ENST00000592962.5_1_19:36604659-36605276:-|nuORF	ENST00000592962.5_1_19:36604659-36605276:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.75244140625	2	523.75241	1045.49027	0.41797	0.00021891	-0.09418	-4.9327E-05	0.32379	0.00016959	523.7522941782557	47.148	0.84983	47.201	46.901	47.75	0.05257					85	31	4	0	0	0	0.077335	3	10684	10639;10684;10735		65.235	40.561	1	3774100			4798	1960	2389	2389	6586;6587;6588	6587		239			-0.030658786998628784
DAMSILETI	9	Oxidation (M)	_DAM(Oxidation (M))SILETI_		DAM(1)SILETI		DAM(210)SILETI	0	0	1		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7496643066406	2	504.749533	1007.48451	0.61357	0.0003097	-0.30417	-0.00015353	0.30941	0.00015617	504.74936075632843	74.88	0.61712	74.88	74.537	75.154	0					71	21	4	0	0	0	1.8572E-16	3	19174	19174;19223;19266		205.38	130.96	1	4696100			4799	587	2390	2390	6589;6590;6591	6589		67			-0.018930220021502464
DAMSILETI	9	Oxidation (M)	_DAM(Oxidation (M))SILETI_		DAM(1)SILETI		DAM(210)SILETI	0	0	1		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7497253417969	2	504.749533	1007.48451	0.22017	0.00011113	0.02164	1.0923E-05	0.24181	0.00012205	504.7495510880851	75.418	1.0664	75.418	75.154	76.22	0					120	38	6	0	0	0	1.8572E-16	5	19366	19320;19366;19417;19465;19514		205.38	130.96	1	4939500			4800	587	2390	2390	6592;6593;6594;6595;6596	6593		67			-0.018930220021502464
DAMSILETI	9	Oxidation (M)	_DAM(Oxidation (M))SILETI_		DAM(1)SILETI		DAM(210)SILETI	0	0	1		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7495422363281	2	504.749533	1007.48451	0.31905	0.00016104	-0.0033735	-1.7028E-06	0.31567	0.00015934	504.74949458428796	74.838	0.60556	74.891	74.554	75.159	0.052368					78	21	5	0	0	0	1.8572E-16	3	19148	19148;19194;19244		205.38	130.96	1	4897900			4801	587	2390	2390	6597;6598;6599	6597		67			-0.018930220021502464
DAMSILETI	9	Oxidation (M)	_DAM(Oxidation (M))SILETI_		DAM(1)SILETI		DAM(210)SILETI	0	0	1		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.74969482421875	2	504.749533	1007.48451	0.33823	0.00017072	-0.10567	-5.3338E-05	0.23256	0.00011738	504.74950994969606	75.367	1.0289	75.419	75.159	76.188	0.052361					129	37	5	0	0	0	1.8572E-16	4	19351	19306;19351;19393;19435		205.38	130.96	1	5137600			4802	587	2390	2390	6600;6601;6602;6603	6601		67			-0.018930220021502464
DAMSILETI	9	Oxidation (M)	_DAM(Oxidation (M))SILETI_		DAM(1)SILETI		DAM(190)SILETI	0	0	1		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.74981689453125	2	504.749533	1007.48451	0.61808	0.00031197	-0.22535	-0.00011374	0.39273	0.00019823	504.7493781310754	74.907	0.60124	74.876	74.557	75.159	-0.031487					69	21	4	0	0	0	4.5012E-11	3	19215	19167;19215;19259		188.58	114.15	1	4746600			4803	587	2390	2390	6604;6605;6606	6605		67			-0.018930220021502464
DAMSILETI	9	Oxidation (M)	_DAM(Oxidation (M))SILETI_		DAM(1)SILETI		DAM(210)SILETI	0	0	1		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.74969482421875	2	504.749533	1007.48451	0.45891	0.00023163	-0.27228	-0.00013743	0.18663	9.4199E-05	504.7494163770599	75.483	1.0039	75.451	75.159	76.163	-0.031487					118	36	5	0	0	0	1.8572E-16	5	19367	19325;19367;19419;19472;19542		205.38	130.96	1	4709100			4804	587	2390	2390	6607;6608;6609;6610;6611	6608		67			-0.018930220021502464
DAMTFKERV	9	Oxidation (M)	_DAM(Oxidation (M))TFKERV_		DAM(1)TFKERV		DAM(140)TFKERV	0	0	1		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7739868164062	2	556.773874	1111.53319	0.15114	8.415E-05	-0.17645	-9.824E-05	-0.025307	-1.409E-05	556.7738654834013	26.023	1.2146	26.023	25.683	26.897	0					128	42	5	0	0	0	8.0996E-05	3	4228	4179;4228;4274		143.91	102.07	1	4630900			4805	8529;12963;8544;8548	2391	2391	6612;6613;6614	6613		910			-0.01811108642414183
DAMTFKERV	9	Oxidation (M)	_DAM(Oxidation (M))TFKERV_		DAM(1)TFKERV		DAM(140)TFKERV	0	0	1		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.77392578125	2	556.773874	1111.53319	0.13615	7.5807E-05	-0.15337	-8.5393E-05	-0.017217	-9.5862E-06	556.7738530618542	26.059	1.0743	26.02	25.721	26.795	-0.038671					107	37	4	0	0	0	0.00013073	3	4244	4203;4244;4286		135.86	92.43	1	5047200			4806	8529;12963;8544;8548	2391	2391	6615;6616;6617	6616		910			-0.01811108642414183
DAMTFKERV	9	Oxidation (M)	_DAM(Oxidation (M))TFKERV_		DAM(1)TFKERV		DAM(160)TFKERV	0	0	1		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7739868164062	2	556.773874	1111.53319	0.21774	0.00012123	-0.19236	-0.0001071	0.025379	1.413E-05	556.7738239429551	26.141	1.0949	26.119	25.774	26.869	-0.022238					123	38	5	0	0	0	6.549E-06	3	4237	4237;4280;4323		155.95	110.25	1	4457100			4807	8529;12963;8544;8548	2391	2391	6618;6619;6620	6618		910			-0.01811108642414183
DAMYVKLI	8	Oxidation (M)	_DAM(Oxidation (M))YVKLI_		DAM(1)YVKLI		DAM(92)YVKLI	0	0	1		ENSG00000154582|ENST00000520242|ELOC	ENSG00000154582|ENST00000520242|ELOC	ENSG00000154582|ENST00000520242|ELOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7597961425781	2	484.759704	967.504854	0.40288	0.0001953	-0.079102	-3.8346E-05	0.32378	0.00015695	484.7595838913682	53.631	1.2617	53.631	53.173	54.435	0					139	46	4	0	0	0	0.027083	4	12630	12630;12675;12723;12779		92.491	40.223	1	4721500			4808	5138	2392	2392	6621;6622;6623;6624	6621		629			0.01980193448321188
DAMYVKLI	8	Oxidation (M)	_DAM(Oxidation (M))YVKLI_		DAM(1)YVKLI		DAM(92)YVKLI	0	0	1		ENSG00000154582|ENST00000520242|ELOC	ENSG00000154582|ENST00000520242|ELOC	ENSG00000154582|ENST00000520242|ELOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.75982666015625	2	484.759704	967.504854	0.17589	8.5264E-05	0.17383	8.4264E-05	0.34972	0.00016953	484.75967930184356	53.453	1.1793	53.509	53.167	54.346	0.056259					104	44	3	0	0	0	0.027083	4	12668	12575;12620;12668;12720		92.491	31.134	1	4710900			4809	5138	2392	2392	6625;6626;6627;6628	6627		629			0.01980193448321188
DAMYVKLI	8	Oxidation (M)	_DAM(Oxidation (M))YVKLI_		DAM(1)YVKLI		DAM(85)YVKLI	0	0	1		ENSG00000154582|ENST00000520242|ELOC	ENSG00000154582|ENST00000520242|ELOC	ENSG00000154582|ENST00000520242|ELOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.75982666015625	2	484.759704	967.504854	0.38549	0.00018687	-0.047055	-2.2811E-05	0.33843	0.00016406	484.75957816217135	53.73	1.4195	53.72	53.218	54.637	-0.0096054					161	51	4	0	0	0	0.035151	4	12642	12642;12690;12737;12786		85.272	33.004	1	4991500			4810	5138	2392	2392	6629;6630;6631;6632	6629		629			0.01980193448321188
DANALDKDFKL	11	Unmodified	_DANALDKDFKL_					0	0	0			REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.90087890625	3	417.218949	1248.63502	-0.075699	-3.1583E-05	0.013877	5.7899E-06	-0.061822	-2.5793E-05	417.2189109124683	38.171	1.0764	38.171	37.767	38.844	0					131	38	5	0	0	0	0.2454	1	7875	7875		27.129	3.1647	1	4306100	+		4811	17695	2393	2393	6633	6633					0.02064460981000593
DANNAKAVV	9	Unmodified	_DANNAKAVV_					0	0	0		ENSG00000110651|ENST00000263645|CD81;ENST00000468153.1_1_11:2416081-2418093:+|nuORF;ENST00000531840.1_1_11:2416360-2416819:+|nuORF	ENSG00000110651|ENST00000263645|CD81	ENSG00000110651|ENST00000263645|CD81	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.24066162109375	2	451.240524	900.466495	0.16642	7.5097E-05	0.40398	0.00018229	0.57041	0.00025739	451.2406752831696	20.095	0.59934	20.095	19.796	20.395	0					38	22	2	0	0	0	0.18208	1	2452	2452		26.268	11.43	1	235410			4812	2319	2394	2394	6634	6634					0.012280238579933211
DANNAKAVV	9	Unmodified	_DANNAKAVV_					0	0	0		ENSG00000110651|ENST00000263645|CD81;ENST00000468153.1_1_11:2416081-2418093:+|nuORF;ENST00000531840.1_1_11:2416360-2416819:+|nuORF	ENSG00000110651|ENST00000263645|CD81	ENSG00000110651|ENST00000263645|CD81	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.24078369140625	2	451.240524	900.466495	0.33384	0.00015064	0.19928	8.9923E-05	0.53311	0.00024056	451.24054063569247	20.3	0.56068	20.19	19.846	20.407	-0.11003					34	20	2	0	0	0	0.27726	1	2529	2529		12.241	4.3305	1	229550			4813	2319	2394	2394	6635	6635					0.012280238579933211
DANNAKAVV	9	Unmodified	_DANNAKAVV_					0	0	0		ENSG00000110651|ENST00000263645|CD81;ENST00000468153.1_1_11:2416081-2418093:+|nuORF;ENST00000531840.1_1_11:2416360-2416819:+|nuORF	ENSG00000110651|ENST00000263645|CD81	ENSG00000110651|ENST00000263645|CD81	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2411193847656	2	451.240524	900.466495	0.48959	0.00022092	-0.010663	-4.8114E-06	0.47893	0.00021611	451.2404327575577	20.19	0.50719	20.134	19.877	20.384	-0.055693					32	18	2	0	0	0	0.22215	1	2482	2482		20.415	6.5085	1	249130			4814	2319	2394	2394	6636	6636					0.012280238579933211
DANPFLQSV	9	Unmodified	_DANPFLQSV_					0	0	0		nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15;ENST00000493216.1_1_22:20939554-20940988:+|nuORF;ENST00000473244.5_1_22:20936789-20940988:+|nuORF;ENST00000489651.5_1_22:20929276-20940988:+|nuORF;ENST00000492381.5_1_22:20909161-20940988:+|nuORF	nc|ENSG00000099917|Q96RN5-3|MED15	nc|ENSG00000099917|Q96RN5-3|MED15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.74871826171875	2	495.748182	989.481811	0.41106	0.00020378	0.68372	0.00033895	1.0948	0.00054273	495.7484272345171	67.862	0.98645	67.862	67.45	68.436	0					103	35	4	0	0	0	3.361E-11	1	17086	17086		192.32	70.975	1	3775800			4815	1505	2395	2395	6637	6637					-0.013351093448022766
DANPFLQSV	9	Unmodified	_DANPFLQSV_					0	0	0		nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15;ENST00000493216.1_1_22:20939554-20940988:+|nuORF;ENST00000473244.5_1_22:20936789-20940988:+|nuORF;ENST00000489651.5_1_22:20929276-20940988:+|nuORF;ENST00000492381.5_1_22:20909161-20940988:+|nuORF	nc|ENSG00000099917|Q96RN5-3|MED15	nc|ENSG00000099917|Q96RN5-3|MED15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7489318847656	2	495.748182	989.481811	0.54738	0.00027136	0.5081	0.00025189	1.0555	0.00052326	495.74833165915584	67.743	0.98022	67.821	67.434	68.414	0.078041					108	34	4	0	0	0	2.1937E-08	1	17056	17056		179.28	57.938	1	3460000			4816	1505	2395	2395	6638	6638					-0.013351093448022766
DANPFLQSV	9	Unmodified	_DANPFLQSV_					0	0	0		nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15;ENST00000493216.1_1_22:20939554-20940988:+|nuORF;ENST00000473244.5_1_22:20936789-20940988:+|nuORF;ENST00000489651.5_1_22:20929276-20940988:+|nuORF;ENST00000492381.5_1_22:20909161-20940988:+|nuORF	nc|ENSG00000099917|Q96RN5-3|MED15	nc|ENSG00000099917|Q96RN5-3|MED15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7483215332031	2	495.748182	989.481811	0.33725	0.00016719	0.65878	0.00032659	0.99603	0.00049378	495.7484038955538	67.837	1.0083	67.821	67.478	68.487	-0.016296					102	35	4	0	0	0	1.811E-16	2	17032	17032;17080		205.91	62.004	1	3352600			4817	1505	2395	2395	6639;6640	6639					-0.013351093448022766
DANPYDSVKKI	11	Unmodified	_DANPYDSVKKI_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.2189636230469	3	417.218949	1248.63502	-0.075699	-3.1583E-05	0.013877	5.7899E-06	-0.061822	-2.5793E-05	417.2189109124683	38.171	1.0764	38.171	37.767	38.844	0					131	38	5	0	0	0	0.073872	3	7939	7890;7939;7983		46.34	23.324	1	4306100			4818	8366	2396	2396	6641;6642;6643	6642					0.02064460981000593
DANPYDSVKKI	11	Unmodified	_DANPYDSVKKI_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.3248901367188	2	625.324785	1248.63502	0.30983	0.00019374	-0.0492	-3.0766E-05	0.26063	0.00016298	625.3246992609025	38.164	1.1386	38.164	37.82	38.958	0					98	40	4	0	0	0	1.292E-12	3	7950	7899;7950;7996		175.25	112.02	1	2545200			4819	8366	2396	2396	6644;6645;6646	6645					0.02064460981000593
DANPYDSVKKI	11	Unmodified	_DANPYDSVKKI_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.2188415527344	3	417.218949	1248.63502	0.2479	0.00010343	-0.35107	-0.00014647	-0.10317	-4.3044E-05	417.21876854914325	38.089	1.1427	38.18	37.772	38.915	0.090881					146	41	6	0	0	0	0.033944	4	7931	7843;7882;7931;7973		57.885	35.776	1	4320500			4820	8366	2396	2396	6647;6648;6649;6650	6649					0.02064460981000593
DANPYDSVKKI	11	Unmodified	_DANPYDSVKKI_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.3248291015625	2	625.324785	1248.63502	0.096346	6.0248E-05	0.14091	8.8112E-05	0.23725	0.00014836	625.324829273333	38.062	0.88127	38.153	37.849	38.73	0.090881					85	31	4	0	0	0	3.1902E-09	3	7914	7868;7914;7956		175.25	127.52	1	2078700			4821	8366	2396	2396	6651;6652;6653	6652					0.02064460981000593
DANPYDSVKKI	11	Unmodified	_DANPYDSVKKI_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.2189025878906	3	417.218949	1248.63502	0.12234	5.1041E-05	-0.18227	-7.6045E-05	-0.059929	-2.5004E-05	417.21881945086477	38.018	1.1834	38.116	37.654	38.838	0.097527					162	42	6	0	0	0	0.051754	4	7886	7831;7836;7886;7932		52.735	30.626	1	4194200			4822	8366	2396	2396	6654;6655;6656;6657	6656					0.02064460981000593
DANPYDSVKKI	11	Unmodified	_DANPYDSVKKI_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.3247680664062	2	625.324785	1248.63502	0.13698	8.5659E-05	0.10589	6.6216E-05	0.24287	0.00015188	625.3248251258082	38.006	0.80021	38.104	37.768	38.568	0.097527					85	28	4	0	0	0	5.4993E-18	3	7888	7843;7888;7941		198.02	126.32	1	2163700			4823	8366	2396	2396	6658;6659;6660	6659					0.02064460981000593
DANQLLNKI	9	Unmodified	_DANQLLNKI_					0	0	0		ENSG00000153071|ENST00000320816|DAB2;nc|ENSG00000153071|P98082-3|DAB2;nc|ENSG00000153071|P98082-2|DAB2	ENSG00000153071|ENST00000320816|DAB2	ENSG00000153071|ENST00000320816|DAB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.3060913085938	2	514.790381	1027.56621	-0.0019151	-9.859E-07	1.5776	0.00081213	1.5757	0.00081114	514.7916360492368	52.16	0.56387	52.159	51.876	52.44	-0.00080872					48	20	3	0	0	0	0.075356	1	12214	12214		55.503	18.997	1	301340			4824	5058	2397	2397	6661	6661					0.053528414719721695
DANQLLNKI	9	Unmodified	_DANQLLNKI_					0	0	0		ENSG00000153071|ENST00000320816|DAB2;nc|ENSG00000153071|P98082-3|DAB2;nc|ENSG00000153071|P98082-2|DAB2	ENSG00000153071|ENST00000320816|DAB2	ENSG00000153071|ENST00000320816|DAB2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	514.790381	1027.56621	0.26586	0.00013686	1.4625	0.00075289	1.7284	0.00088975	514.791343419314	52.044	0.43608	52.044	51.86	52.296	0	-0.04605	0.00017122	NaN	40.239	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399140			4825	5058	2397	2397							0.053528414719721695
DANQLLNKI	9	Unmodified	_DANQLLNKI_					0	0	0		ENSG00000153071|ENST00000320816|DAB2;nc|ENSG00000153071|P98082-3|DAB2;nc|ENSG00000153071|P98082-2|DAB2	ENSG00000153071|ENST00000320816|DAB2	ENSG00000153071|ENST00000320816|DAB2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	514.790381	1027.56621	0.27261	0.00014034	0.98588	0.00050752	1.2585	0.00064786	514.7908874813751	52.016	0.4911	52.066	51.846	52.337	0.050571	-0.023441	-0.00031952	NaN	40.239	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326280			4826	5058	2397	2397							0.053528414719721695
DANSLIENH	9	Unmodified	_DANSLIENH_					0	0	0			REV__ENSG00000104689|ENST00000221132|TNFRSF10A	REV__ENSG00000104689|ENST00000221132|TNFRSF10A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.31365966796875	2	506.738345	1011.46214	0.32498	0.00016468	2.4446	0.0012388	2.7696	0.0014035	506.7393348215695	67.845	0.45091	67.845	67.623	68.074	0					21	15	2	0	0	0	0.24289	1	17059	17059		8.7454	0	1	194360	+		4827	14415	2398	2398	6662	6662					-0.04313485355555713
DANSLIENH	9	Unmodified	_DANSLIENH_					0	0	0			REV__ENSG00000104689|ENST00000221132|TNFRSF10A	REV__ENSG00000104689|ENST00000221132|TNFRSF10A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	506.738345	1011.46214	0.43842	0.00022216	1.9296	0.00097779	2.368	0.0012	506.7393857282459	67.804	0.731	67.883	67.515	68.246	0.078041	0.01891	-0.00033204	NaN	8.7454	33	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137720	+		4828	14415	2398	2398							-0.04313485355555713
DANSQSVKV	9	Unmodified	_DANSQSVKV_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF	ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF	ENSG00000164953|ENST00000453321|TMEM67	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2425537109375	2	474.243264	946.471974	0.1774	8.413E-05	-0.17232	-8.172E-05	0.005081	2.4096E-06	474.24305025978884	21.391	0.53565	21.391	21.169	21.704	0					46	18	4	0	0	0	0.073988	1	2812	2812		43.982	9.8794	1	144060			4829	5908;10930	2399	2399	6663	6663					-0.0034029735016929408
DANSQSVKV	9	Unmodified	_DANSQSVKV_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF	ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF	ENSG00000164953|ENST00000453321|TMEM67	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.2431640625	2	474.243264	946.471974	0.37377	0.00017726	-0.54447	-0.00025821	-0.1707	-8.0956E-05	474.2428599814565	21.489	0.55572	21.388	21.16	21.716	-0.10034					35	19	2	0	0	0	0.062981	1	2863	2863		48.073	13.97	1	146200			4830	5908;10930	2399	2399	6664	6664					-0.0034029735016929408
DANSQSVKV	9	Unmodified	_DANSQSVKV_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF	ENSG00000164953|ENST00000453321|TMEM67;ENST00000474944.5_1_8:94767142-94822123:+|nuORF	ENSG00000164953|ENST00000453321|TMEM67	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.242919921875	2	474.243264	946.471974	0.26586	0.00012608	-0.35901	-0.00017026	-0.093143	-4.4172E-05	474.24295385928014	21.418	0.56745	21.369	21.15	21.717	-0.049376					33	19	2	0	0	0	0.073988	1	2845	2845		43.982	9.8794	1	159660			4831	5908;10930	2399	2399	6665	6665					-0.0034029735016929408
DAPAGRKV	8	Unmodified	_DAPAGRKV_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.2323303222656	2	407.232502	812.450451	-0.41752	-0.00017003	-0.037646	-1.533E-05	-0.45517	-0.00018536	407.23267425223946	12.863	1.0413	12.863	12.699	13.74	0					93	36	4	0	0	0	0.12475	2	244	244;290		56.177	20.133	1	3241300			4832	5505	2400	2400	6666;6667	6666					0.03672362411748509
DAPAGRKV	8	Unmodified	_DAPAGRKV_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.2323913574219	2	407.232502	812.450451	-0.34278	-0.00013959	0.0009946	4.0503E-07	-0.34178	-0.00013918	407.2326879563618	12.922	1.1003	12.823	12.643	13.743	-0.099291					96	38	4	0	0	0	0.077335	3	257	257;299;343		65.235	24.576	1	3289600			4833	5505	2400	2400	6668;6669;6670	6668					0.03672362411748509
DAPAGRKV	8	Unmodified	_DAPAGRKV_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2322998046875	2	407.232502	812.450451	-0.42483	-0.00017301	-0.017873	-7.2784E-06	-0.4427	-0.00018028	407.2326418299332	12.932	1.0438	12.864	12.671	13.714	-0.067495					95	36	4	0	0	0	0.088223	2	255	255;300		62.573	20.478	1	2848600			4834	5505	2400	2400	6671;6672	6671					0.03672362411748509
DAPDLLKV	8	Unmodified	_DAPDLLKV_					0	0	0		nc|ENSG00000157765|O95436-2|SLC34A2;ENSG00000157765|ENST00000382051|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.7501525878906	2	435.750193	869.485833	0.18094	7.8843E-05	0.046088	2.0083E-05	0.22702	9.8925E-05	435.75010427434495	53.802	1.1372	53.802	53.542	54.68	0					91	41	3	0	0	0	0.019016	3	12740	12696;12740;12800		103.35	35.273	1	4407600			4835	5324	2401	2401	6673;6674;6675	6674					0.0458698014890615
DAPDLLKV	8	Unmodified	_DAPDLLKV_					0	0	0		nc|ENSG00000157765|O95436-2|SLC34A2;ENSG00000157765|ENST00000382051|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.75030517578125	2	435.750193	869.485833	-0.046561	-2.0289E-05	0.2698	0.00011756	0.22324	9.7275E-05	435.75021609007626	53.795	1.1529	53.852	53.535	54.688	0.056255					99	43	3	0	0	0	0.019016	3	12725	12678;12725;12775		103.35	35.273	1	4772500			4836	5324	2401	2401	6676;6677;6678	6677					0.0458698014890615
DAPDLLKV	8	Unmodified	_DAPDLLKV_					0	0	0		nc|ENSG00000157765|O95436-2|SLC34A2;ENSG00000157765|ENST00000382051|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.7501525878906	2	435.750193	869.485833	0.092246	4.0196E-05	-0.012901	-5.6218E-06	0.079344	3.4574E-05	435.7500880430704	53.9	1.2395	53.89	53.531	54.771	-0.0096054					87	44	3	0	0	0	0.048928	3	12763	12713;12763;12809		78.728	28.795	1	4952100			4837	5324	2401	2401	6679;6680;6681	6680					0.0458698014890615
DAPDVFTV	8	Unmodified	_DAPDVFTV_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.21087646484375	2	432.210901	862.407249	0.10621	4.5905E-05	0.057879	2.5016E-05	0.16409	7.0921E-05	432.2108654748862	66.134	1.7928	66.134	65.686	67.479	0					143	63	4	0	0	0	0.0002007	5	16539	16496;16539;16583;16634;16691		154.46	107.54	1	3596100			4838	1775	2402	2402	6682;6683;6684;6685;6686	6683					-0.02945872156169571
DAPDVFTV	8	Unmodified	_DAPDVFTV_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.2108459472656	2	432.210901	862.407249	0.16808	7.2646E-05	-0.0040665	-1.7576E-06	0.16401	7.0888E-05	432.2108363086979	66.034	1.5205	66.118	65.699	67.219	0.083832					129	54	4	0	0	0	0.010069	4	16494	16449;16494;16544;16598		117.6	70.678	1	3323600			4839	1775	2402	2402	6687;6688;6689;6690	6688					-0.02945872156169571
DAPDVFTV	8	Unmodified	_DAPDVFTV_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.2108459472656	2	432.210901	862.407249	-0.019047	-8.2321E-06	0.18778	8.1159E-05	0.16873	7.2927E-05	432.21090893676455	66.119	1.6484	66.105	65.748	67.396	-0.013588					139	58	4	0	0	0	0.0002007	5	16527	16485;16527;16572;16622;16673		154.46	107.54	1	3423700			4840	1775	2402	2402	6691;6692;6693;6694;6695	6692					-0.02945872156169571
DAPELSHV	8	Unmodified	_DAPELSHV_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;nc|ENSG00000241973|P42356-2|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7803039550781	2	434.213975	866.413397	0.25842	0.00011221	0.62779	0.0002726	0.88621	0.0003848	434.2141724590102	34.047	0.4677	34.047	33.839	34.306	0					25	16	2	0	0	0	0.34167	1	6705	6705		7.2892	5.445	1	178260			4841	8538	2403	2403	6696	6696					-0.025153539246502987
DAPELSHV	8	Unmodified	_DAPELSHV_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;nc|ENSG00000241973|P42356-2|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7802734375	2	434.213975	866.413397	-0.20608	-8.9482E-05	0.75979	0.00032991	0.55371	0.00024043	434.2141834765624	33.915	0.5518	33.981	33.657	34.209	0.066704					29	19	2	0	0	0	0.34131	1	6642	6642		7.9102	0.62092	1	178330			4842	8538	2403	2403	6697	6697					-0.025153539246502987
DAPFVFAEV	9	Unmodified	_DAPFVFAEV_					0	0	0		nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;ENSG00000198959|ENST00000361475|TGM2;ENSG00000124491|ENST00000264870|F13A1	nc|ENSG00000198959|P21980-2|TGM2;ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.74786376953125	2	497.74765	993.480748	0.65956	0.00032829	-0.66404	-0.00033053	-0.0044844	-2.2321E-06	497.747229995207	83.637	0.81644	83.637	83.321	84.137	0					73	31	3	0	0	0	0.0018995	3	21879	21836;21879;21926		111.29	49.93	1	1907300			4843	8174;3160	2404	2404	6698;6699;6700	6699					-0.016253237137107135
DAPFVFAEV	9	Unmodified	_DAPFVFAEV_					0	0	0		nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;ENSG00000198959|ENST00000361475|TGM2;ENSG00000124491|ENST00000264870|F13A1	nc|ENSG00000198959|P21980-2|TGM2;ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.747802734375	2	497.74765	993.480748	0.55759	0.00027754	-0.49527	-0.00024652	0.062321	3.102E-05	497.74723800950716	83.624	1.3963	83.701	82.805	84.201	0.077095					126	54	4	0	0	0	0.0028127	3	21852	21806;21852;21896		103.75	42.391	1	1539500			4844	8174;3160	2404	2404	6701;6702;6703	6702					-0.016253237137107135
DAPFVFAEV	9	Unmodified	_DAPFVFAEV_					0	0	0		nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;ENSG00000198959|ENST00000361475|TGM2;ENSG00000124491|ENST00000264870|F13A1	nc|ENSG00000198959|P21980-2|TGM2;ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.747802734375	2	497.74765	993.480748	0.55744	0.00027746	-0.41075	-0.00020445	0.14669	7.3013E-05	497.7472700581457	83.684	0.95676	83.668	83.246	84.203	-0.016823					117	41	4	0	0	0	0.0015545	3	21881	21836;21881;21927		115.69	44.558	1	1470100			4845	8174;3160	2404	2404	6704;6705;6706	6705					-0.016253237137107135
DAPFVINAI	9	Unmodified	_DAPFVINAI_					0	0	0		ENSG00000205084|ENST00000258173|TMEM231;ENST00000564318.1_1_16:75573894-75575375:-|nuORF;nc|ENSG00000205084|Q9H6L2-3|TMEM231;nc|ENSG00000205084|Q9H6L2-2|TMEM231	ENSG00000205084|ENST00000258173|TMEM231	ENSG00000205084|ENST00000258173|TMEM231	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.26348876953125	2	480.263468	958.512382	0.17331	8.3237E-05	0.46195	0.00022186	0.63526	0.00030509	480.2634298901333	79.909	0.87324	79.909	79.592	80.466	0					89	32	4	0	0	0	0.016723	2	20767	20719;20767		69.105	23.084	1	991090			4846	8270	2405	2405	6707;6708	6708					0.031466690402339736
DAPFVINAI	9	Unmodified	_DAPFVINAI_					0	0	0		ENSG00000205084|ENST00000258173|TMEM231;ENST00000564318.1_1_16:75573894-75575375:-|nuORF;nc|ENSG00000205084|Q9H6L2-3|TMEM231;nc|ENSG00000205084|Q9H6L2-2|TMEM231	ENSG00000205084|ENST00000258173|TMEM231	ENSG00000205084|ENST00000258173|TMEM231	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2633972167969	2	480.263468	958.512382	0.24689	0.00011857	0.44255	0.00021254	0.68945	0.00033112	480.2633996179922	79.863	0.84804	79.924	79.594	80.442	0.061409					91	31	4	0	0	0	0.004681	2	20725	20676;20725		88.954	24.718	1	1131900			4847	8270	2405	2405	6709;6710	6710					0.031466690402339736
DAPFVINAI	9	Unmodified	_DAPFVINAI_					0	0	0		ENSG00000205084|ENST00000258173|TMEM231;ENST00000564318.1_1_16:75573894-75575375:-|nuORF;nc|ENSG00000205084|Q9H6L2-3|TMEM231;nc|ENSG00000205084|Q9H6L2-2|TMEM231	ENSG00000205084|ENST00000258173|TMEM231	ENSG00000205084|ENST00000258173|TMEM231	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.26348876953125	2	480.263468	958.512382	0.2824	0.00013563	0.47074	0.00022608	0.75314	0.00036171	480.2634333273612	79.938	0.75858	79.909	79.644	80.403	-0.028931					73	26	4	0	0	0	0.03069	2	20748	20748;20798		60.074	22.1	1	1018900			4848	8270	2405	2405	6711;6712	6711					0.031466690402339736
DAPGVPLR	8	Unmodified	_DAPGVPLR_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.7351379394531	2	412.734877	823.455202	-0.10013	-4.1326E-05	0.23346	9.6358E-05	0.13334	5.5032E-05	412.7349093879223	43	2.1127	43	41.9	44.013	0					209	76	4	0	0	0	0.11736	2	9236	9236;9283		57.471	0	1	6934000			4849	8401	2406	2406	6713;6714	6713					0.036412465545254236
DAPGVPRI	8	Unmodified	_DAPGVPRI_					0	0	0		ENST00000480189.5_1_2:208424955-208436489:+|nuORF;nc|ENSG00000118260|P16220-3|CREB1;ENSG00000118260|ENST00000353267|CREB1;nc|ENSG00000118260|P16220-1|CREB1	ENST00000480189.5_1_2:208424955-208436489:+|nuORF	ENST00000480189.5_1_2:208424955-208436489:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.73480224609375	2	412.734877	823.455202	-0.10013	-4.1326E-05	0.23346	9.6358E-05	0.13334	5.5032E-05	412.7349093879223	43	2.1127	43	41.9	44.013	0					209	76	4	0	0	0	0.071344	3	9374	9374;9415;9461		68.081	3.8444	1	6934000			4850	2823	2407	2407	6715;6716;6717	6715					0.03641246554514055
DAPGVPRI	8	Unmodified	_DAPGVPRI_					0	0	0		ENST00000480189.5_1_2:208424955-208436489:+|nuORF;nc|ENSG00000118260|P16220-3|CREB1;ENSG00000118260|ENST00000353267|CREB1;nc|ENSG00000118260|P16220-1|CREB1	ENST00000480189.5_1_2:208424955-208436489:+|nuORF	ENST00000480189.5_1_2:208424955-208436489:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.7347717285156	2	412.734877	823.455202	0.17692	7.3021E-05	-0.29429	-0.00012147	-0.11737	-4.8444E-05	412.7346953915106	42.827	1.939	42.912	41.959	43.898	0.085197					194	70	4	0	0	0	0.071344	4	9271	9271;9317;9361;9408		68.081	3.8776	1	7663300			4851	2823	2407	2407	6718;6719;6720;6721	6718					0.03641246554514055
DAPGVPRI	8	Unmodified	_DAPGVPRI_					0	0	0		ENST00000480189.5_1_2:208424955-208436489:+|nuORF;nc|ENSG00000118260|P16220-3|CREB1;ENSG00000118260|ENST00000353267|CREB1;nc|ENSG00000118260|P16220-1|CREB1	ENST00000480189.5_1_2:208424955-208436489:+|nuORF	ENST00000480189.5_1_2:208424955-208436489:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.7346496582031	2	412.734877	823.455202	0.02929	1.2089E-05	-0.13113	-5.4121E-05	-0.10184	-4.2031E-05	412.7347575260044	42.776	2.0279	42.867	41.896	43.924	0.091362					205	73	4	0	0	0	0.050146	5	9296	9247;9296;9343;9389;9437		78.149	13.913	1	7274300			4852	2823	2407	2407	6722;6723;6724;6725;6726	6723					0.03641246554514055
DAPHPLSKI	9	Unmodified	_DAPHPLSKI_					0	0	0		ENST00000560837.5_1_15:64982571-64983740:-|nuORF;ENSG00000180304|ENST00000326005|OAZ2	ENST00000560837.5_1_15:64982571-64983740:-|nuORF	ENST00000560837.5_1_15:64982571-64983740:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2741394042969	2	489.274367	976.53418	0.11823	5.7848E-05	-0.4941	-0.00024175	-0.37586	-0.0001839	489.27392631594455	31.267	0.41351	31.267	31.062	31.476	0					31	14	3	0	0	0	0.18022	1	5852	5852		37.075	14.338	1	267940			4853	7177	2408	2408	6727	6727					0.04497473788796924
DAPHPLSKI	9	Unmodified	_DAPHPLSKI_					0	0	0		ENST00000560837.5_1_15:64982571-64983740:-|nuORF;ENSG00000180304|ENST00000326005|OAZ2	ENST00000560837.5_1_15:64982571-64983740:-|nuORF	ENST00000560837.5_1_15:64982571-64983740:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2742004394531	2	489.274367	976.53418	0.032082	1.5697E-05	-0.42245	-0.0002067	-0.39037	-0.000191	489.27413957175554	31.244	0.46339	31.286	31.052	31.515	0.042364					33	16	3	0	0	0	0.043711	1	5793	5793		55.235	26.153	1	302700			4854	7177	2408	2408	6728	6728					0.04497473788796924
DAPHPPLKI	9	Unmodified	_DAPHPPLKI_					0	0	0		ENSG00000104904|ENST00000602676|OAZ1	ENSG00000104904|ENST00000602676|OAZ1	ENSG00000104904|ENST00000602676|OAZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2845153808594	2	494.284734	986.554916	0.12222	6.0409E-05	-0.042678	-2.1095E-05	0.079537	3.9314E-05	494.2845283782097	39.694	2.1994	39.694	38.377	40.576	0					238	79	5	0	0	0	0.00014042	3	8444	8348;8394;8444		134.3	85.95	1	5907100			4855	1935	2409	2409	6729;6730;6731	6731					0.0611006416845612
DAPHPPLKI	9	Unmodified	_DAPHPPLKI_					0	0	0		ENSG00000104904|ENST00000602676|OAZ1	ENSG00000104904|ENST00000602676|OAZ1	ENSG00000104904|ENST00000602676|OAZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.284423828125	2	494.284734	986.554916	0.40662	0.00020099	-0.295	-0.00014581	0.11162	5.5172E-05	494.28439601887044	39.642	2.0447	39.735	38.622	40.667	0.09267					219	73	5	0	0	0	0.0010463	3	8365	8322;8365;8408		122.18	66.303	1	5837900			4856	1935	2409	2409	6732;6733;6734	6733					0.0611006416845612
DAPHPPLKI	9	Unmodified	_DAPHPPLKI_					0	0	0		ENSG00000104904|ENST00000602676|OAZ1	ENSG00000104904|ENST00000602676|OAZ1	ENSG00000104904|ENST00000602676|OAZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2843933105469	2	494.284734	986.554916	0.37591	0.00018581	-0.26632	-0.00013164	0.10959	5.417E-05	494.2844189710206	39.56	2.3117	39.659	38.439	40.75	0.099403					235	83	5	0	0	0	0.00011048	3	8351	8303;8351;8394		139.14	81.667	1	6392400			4857	1935	2409	2409	6735;6736;6737	6736					0.0611006416845612
DAPIGPHL	8	Unmodified	_DAPIGPHL_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.9010925292969	2	410.221603	818.428653	-0.12355	-5.0683E-05	0.65211	0.00026751	0.52856	0.00021682	410.2218535784692	42.8	0.87393	42.8	42.407	43.281	0					93	31	4	0	0	0	0.2285	1	9400	9400		42.968	12.77	1	3315800			4858	2134	2410	2410	6738	6738					0.012175576631761942
DAPIGPHL	8	Unmodified	_DAPIGPHL_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9011535644531	2	410.221603	818.428653	0.0047682	1.956E-06	0.84741	0.00034763	0.85218	0.00034958	410.2220613206215	42.713	1.4392	42.798	42.434	43.873	0.085201					108	52	4	0	0	0	0.1245	1	9353	9353		49.669	21.496	1	3579200			4859	2134	2410	2410	6739	6739					0.012175576631761942
DAPIGPHL	8	Unmodified	_DAPIGPHL_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.90118408203125	2	410.221603	818.428653	-0.069501	-2.8511E-05	0.98607	0.00040451	0.91657	0.000376	410.22207902577804	42.686	1.15	42.777	42.292	43.442	0.091362					108	41	5	0	0	0	0.19042	1	9323	9323		59.795	14.045	1	3314300			4860	2134	2410	2410	6740	6740					0.012175576631761942
DAPIQLSKI	9	Unmodified	_DAPIQLSKI_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF;ENST00000485921.5_1_3:183903968-183904686:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.7898254394531	2	492.78985	983.565146	0.31743	0.00015643	-0.011089	-5.4644E-06	0.30634	0.00015096	492.78971971125446	52.035	0.54688	52.035	51.836	52.382	0					45	19	3	0	0	0	0.015535	1	12213	12213		70.929	21.374	1	793040			4861	5511	2411	2411	6741	6741					0.07270627103048355
DAPIQLSKI	9	Unmodified	_DAPIQLSKI_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF;ENST00000485921.5_1_3:183903968-183904686:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2976989746094	2	492.78985	983.565146	0.4018	0.000198	-0.12773	-6.2944E-05	0.27407	0.00013506	492.78963560620906	52.011	0.59989	52.062	51.817	52.417	0.050575					45	21	3	0	0	0	0.081941	1	12170	12170		47.732	27.317	1	827610			4862	5511	2411	2411	6742	6742					0.07270627103048355
DAPIQLSKI	9	Unmodified	_DAPIQLSKI_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF;ENST00000485921.5_1_3:183903968-183904686:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2978820800781	2	492.78985	983.565146	0.13567	6.6855E-05	-0.24718	-0.00012181	-0.11152	-5.4955E-05	492.7897894344444	52.077	0.67656	52.076	51.764	52.44	-0.00080872					41	24	2	0	0	0	0.081941	1	12204	12204		63.227	30.442	1	994840			4863	5511	2411	2411	6743	6743					0.07270627103048355
DAPISITL	8	Unmodified	_DAPISITL_					0	0	0		nc|ENSG00000189221|P21397-2|MAOA;ENSG00000189221|ENST00000338702|MAOA	nc|ENSG00000189221|P21397-2|MAOA	nc|ENSG00000189221|P21397-2|MAOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.2372741699219	2	415.236919	828.459284	0.056327	2.3389E-05	-0.15491	-6.4324E-05	-0.098583	-4.0935E-05	415.237075674854	72.338	1.7239	72.338	71.989	73.713	0					189	62	5	0	0	0	4.5742E-06	6	18468	18420;18468;18517;18565;18617;18670		170.55	47.455	1	20724000			4864	7808	2412	2412	6744;6745;6746;6747;6748;6749	6745					0.03819291257570967
DAPISITL	8	Unmodified	_DAPISITL_					0	0	0		nc|ENSG00000189221|P21397-2|MAOA;ENSG00000189221|ENST00000338702|MAOA	nc|ENSG00000189221|P21397-2|MAOA	nc|ENSG00000189221|P21397-2|MAOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.2369384765625	2	415.236919	828.459284	0.43979	0.00018262	-0.55803	-0.00023171	-0.11824	-4.9096E-05	415.2368772240661	72.315	1.7505	72.372	71.977	73.728	0.056572					178	63	4	0	0	0	0.0002007	5	18394	18394;18436;18489;18541;18604		154.46	31.367	1	19655000			4865	7808	2412	2412	6750;6751;6752;6753;6754	6750					0.03819291257570967
DAPISITL	8	Unmodified	_DAPISITL_					0	0	0		nc|ENSG00000189221|P21397-2|MAOA;ENSG00000189221|ENST00000338702|MAOA	nc|ENSG00000189221|P21397-2|MAOA	nc|ENSG00000189221|P21397-2|MAOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.237060546875	2	415.236919	828.459284	0.33164	0.00013771	-0.39494	-0.00016399	-0.063297	-2.6283E-05	415.2369305655095	72.408	1.7144	72.38	71.981	73.695	-0.027275					184	61	5	0	0	0	0.0002007	5	18409	18409;18454;18497;18539;18580		154.46	31.367	1	19755000			4866	7808	2412	2412	6755;6756;6757;6758;6759	6755					0.03819291257570967
DAPIVAHL	8	Unmodified	_DAPIVAHL_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.2373046875	2	418.237253	834.459953	0.22619	9.4601E-05	-0.24436	-0.0001022	-0.018173	-7.6005E-06	418.2371739939221	47.426	1.3674	47.426	47.112	48.48	0					106	48	4	0	0	0	8.4279E-06	4	10729	10729;10777;10821;10877		162.47	43.442	1	14337000			4867	2295	2413	2413	6760;6761;6762;6763	6760					0.03610130697279601
DAPIVAHL	8	Unmodified	_DAPIVAHL_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.2372741699219	2	418.237253	834.459953	0.24952	0.00010436	-0.33291	-0.00013924	-0.083386	-3.4875E-05	418.23715494241605	47.384	1.363	47.436	47.142	48.505	0.052574					112	50	4	0	0	0	8.4279E-06	3	10773	10726;10773;10820		162.47	43.442	1	15898000			4868	2295	2413	2413	6764;6765;6766	6765					0.03610130697279601
DAPIVNKV	8	Unmodified	_DAPIVNKV_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.2510986328125	2	428.25036	854.486168	-0.16639	-7.1257E-05	0.33389	0.00014299	0.1675	7.1732E-05	428.2507779346052	33.251	1.8562	33.251	32.895	34.751	0					199	66	5	0	0	0	0.00054609	4	6435	6387;6435;6478;6522		149.99	52.92	1	21557000			4869	2642	2414	2414	6767;6768;6769;6770	6768					0.053103998687561216
DAPIVNKV	8	Unmodified	_DAPIVNKV_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2510986328125	2	428.25036	854.486168	-0.090589	-3.8795E-05	-0.020906	-8.9529E-06	-0.1115	-4.7748E-05	428.2506302055252	33.16	2.237	33.215	32.84	35.077	0.055309					202	80	5	0	0	0	0.0016019	3	6410	6360;6410;6452		136.33	50.977	1	22446000			4870	2642	2414	2414	6771;6772;6773	6772					0.053103998687561216
DAPIVNKV	8	Unmodified	_DAPIVNKV_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.25115966796875	2	428.25036	854.486168	-0.15913	-6.8146E-05	0.2825	0.00012098	0.12337	5.2835E-05	428.2507415478827	33.154	1.9345	33.208	32.85	34.784	0.054371					188	69	5	0	0	0	0.00054609	2	6397	6397;6441		149.99	52.92	1	21566000			4871	2642	2414	2414	6774;6775	6774					0.053103998687561216
DAPKVNAV	8	Unmodified	_DAPKVNAV_					0	0	0		ENSG00000164741|ENST00000276297|DLC1;nc|ENSG00000164741|Q96QB1-5|DLC1;nc|ENSG00000164741|Q96QB1-3|DLC1	ENSG00000164741|ENST00000276297|DLC1;nc|ENSG00000164741|Q96QB1-3|DLC1	ENSG00000164741|ENST00000276297|DLC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.78515625	2	407.226885	812.439217	0.064475	2.6256E-05	-1.4384	-0.00058574	-1.3739	-0.00055949	407.2265823047027	26.356	0.59743	26.334	26.073	26.67	-0.022238					38	20	3	0	0	0	0.31934	1	4315	4315		12.532	0	1	169900			4872	5871;12807	2415	2415	6776	6776					0.025495403176250875
DAPLKRKL	8	Unmodified	_DAPLKRKL_					0	0	0			REV__ENSG00000189233|ENST00000413272|NUGGC	REV__ENSG00000189233|ENST00000413272|NUGGC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.80035400390625	2	470.800552	939.58655	-0.042631	-2.007E-05	-0.12012	-5.6552E-05	-0.16275	-7.6622E-05	470.800407394429	18.005	0.69184	17.887	17.603	18.295	-0.11739					55	23	4	0	0	0	0.32099	1	1832	1832		25.399	0	1	363100	+		4873	18601	2416	2416	6777	6777					0.11434056922405489
DAPLKRKL	8	Unmodified	_DAPLKRKL_					0	0	0			REV__ENSG00000189233|ENST00000413272|NUGGC	REV__ENSG00000189233|ENST00000413272|NUGGC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.80029296875	2	470.800552	939.58655	0.020528	9.6647E-06	-0.19046	-8.9669E-05	-0.16993	-8.0005E-05	470.8003649732284	18.006	0.66411	17.946	17.736	18.401	-0.059708					60	23	4	0	0	0	0.22	2	1778	1778;1822		39.957	0	1	297500	+		4874	18601	2416	2416	6778;6779	6778					0.11434056922405489
DAPLKRKL	8	Unmodified	_DAPLKRKL_					0	0	0			REV__ENSG00000189233|ENST00000413272|NUGGC	REV__ENSG00000189233|ENST00000413272|NUGGC	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	470.800552	939.58655	0.020528	9.6647E-06	-0.19046	-8.9669E-05	-0.16993	-8.0005E-05	470.8003649732284	18.006	0.66411	17.946	17.736	18.401	-0.059708	0.044162	-4.3371E-05	NaN	39.957	60	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297500	+		4875	18601	2416	2416							0.11434056922405489
DAPLNIRSI	9	Unmodified	_DAPLNIRSI_					0	0	0		ENST00000573872.5_1_16:3721765-3727644:-|nuORF;nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1	ENST00000573872.5_1_16:3721765-3727644:-|nuORF	ENST00000573872.5_1_16:3721765-3727644:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.78515625	2	499.785099	997.555644	0.43047	0.00021514	-1.115	-0.00055725	-0.68451	-0.00034211	499.78491916015975	52.605	0.87669	52.605	52.324	53.201	0					61	31	3	0	0	0	0.0028032	1	12362	12362		103.82	39.863	1	784970			4876	3281	2417	2417	6780	6780					0.05676858817525954
DAPLNIRSI	9	Unmodified	_DAPLNIRSI_					0	0	0		ENST00000573872.5_1_16:3721765-3727644:-|nuORF;nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1	ENST00000573872.5_1_16:3721765-3727644:-|nuORF	ENST00000573872.5_1_16:3721765-3727644:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7848815917969	2	499.785099	997.555644	0.50326	0.00025152	-1.1039	-0.00055169	-0.6006	-0.00030017	499.78482081867537	52.539	0.79618	52.59	52.309	53.106	0.050575					59	28	3	0	0	0	0.0045319	2	12346	12346;12408		90.135	34.632	1	853300			4877	3281	2417	2417	6781;6782	6781					0.05676858817525954
DAPLNIRSI	9	Unmodified	_DAPLNIRSI_					0	0	0		ENST00000573872.5_1_16:3721765-3727644:-|nuORF;nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1	ENST00000573872.5_1_16:3721765-3727644:-|nuORF	ENST00000573872.5_1_16:3721765-3727644:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.78497314453125	2	499.785099	997.555644	0.27908	0.00013948	-0.82402	-0.00041183	-0.54494	-0.00027235	499.7849272407484	52.644	0.73446	52.643	52.44	53.175	-0.00080872					59	26	3	0	0	0	0.0028032	2	12348	12348;12399		103.82	48.321	1	915210			4878	3281	2417	2417	6783;6784	6783					0.05676858817525954
DAPLSPLL	8	Unmodified	_DAPLSPLL_					0	0	0		nc|ENSG00000166451|Q96H22-5|CENPN;nc|ENSG00000166451|Q96H22-4|CENPN;ENSG00000166451|ENST00000305850|CENPN	nc|ENSG00000166451|Q96H22-5|CENPN	nc|ENSG00000166451|Q96H22-5|CENPN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2391662597656	2	413.239461	824.46437	-0.25714	-0.00010626	0.19667	8.1273E-05	-0.060461	-2.4985E-05	413.2393873185613	73.834	0.8932	73.834	73.392	74.286	0					65	30	3	0	0	0	0.050494	2	18897	18897;18964		77.984	14.421	1	747200			4879	6082	2418	2418	6785;6786	6785					0.04511595120197853
DAPLSPLL	8	Unmodified	_DAPLSPLL_					0	0	0		nc|ENSG00000166451|Q96H22-5|CENPN;nc|ENSG00000166451|Q96H22-4|CENPN;ENSG00000166451|ENST00000305850|CENPN	nc|ENSG00000166451|Q96H22-5|CENPN	nc|ENSG00000166451|Q96H22-5|CENPN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2391662597656	2	413.239461	824.46437	0.16073	6.6422E-05	-0.1867	-7.7152E-05	-0.025966	-1.073E-05	413.2392735961987	73.753	0.81856	73.805	73.417	74.236	0.052361					44	28	2	0	0	0	0.042326	2	18826	18826;18886		81.864	14.829	1	759720			4880	6082	2418	2418	6787;6788	6787					0.04511595120197853
DAPLSPLL	8	Unmodified	_DAPLSPLL_					0	0	0		nc|ENSG00000166451|Q96H22-5|CENPN;nc|ENSG00000166451|Q96H22-4|CENPN;ENSG00000166451|ENST00000305850|CENPN	nc|ENSG00000166451|Q96H22-5|CENPN	nc|ENSG00000166451|Q96H22-5|CENPN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2393493652344	2	413.239461	824.46437	0.12677	5.2385E-05	-0.22308	-9.2184E-05	-0.096309	-3.9799E-05	413.2392654903276	73.852	0.76721	73.821	73.344	74.111	-0.030655					58	27	3	0	0	0	0.020228	2	18902	18852;18902		101.72	15.601	1	726950			4881	6082	2418	2418	6789;6790	6790					0.04511595120197853
DAPLSPMLY	9	Oxidation (M)	_DAPLSPM(Oxidation (M))LY_		DAPLSPM(1)LY		DAPLSPM(61)LY	0	0	1		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3;ENST00000395675.4_1_17:18575090-18575600:-|nuORF	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2799682617188	2	511.746793	1021.47903	0.45075	0.00023067	-0.30736	-0.00015729	0.14339	7.3382E-05	511.7464515450334	63.705	0.71491	63.705	63.364	64.079	0					55	25	3	0	0	0	0.047851	1	15798	15798		61.357	56.127	1	643080			4882	2838	2419	2419	6791	6791		358			-0.030847007939769355
DAPLSPMLY	9	Oxidation (M)	_DAPLSPM(Oxidation (M))LY_		DAPLSPM(1)LY		DAPLSPM(61)LY	0	0	1		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3;ENST00000395675.4_1_17:18575090-18575600:-|nuORF	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2801513671875	2	511.746793	1021.47903	0.39512	0.0002022	-0.26559	-0.00013592	0.12953	6.6287E-05	511.7465032117928	63.54	0.7547	63.635	63.365	64.119	0.095722					51	26	3	0	0	0	0.074331	1	15759	15759		61.357	50.534	1	670590			4883	2838	2419	2419	6792	6792		358			-0.030847007939769355
DAPLSPMLY	9	Oxidation (M)	_DAPLSPM(Oxidation (M))LY_		DAPLSPM(1)LY		DAPLSPM(61)LY	0	0	1		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3;ENST00000395675.4_1_17:18575090-18575600:-|nuORF	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2806396484375	2	511.746793	1021.47903	0.41743	0.00021362	-0.45485	-0.00023277	-0.037415	-1.9147E-05	511.7464821043943	63.686	0.72094	63.677	63.408	64.129	-0.0085526					54	25	4	0	0	0	0.074331	1	15779	15779		61.357	49.717	1	628520			4884	2838	2419	2419	6793	6793		358			-0.030847007939769355
DAPMTPKQI	9	Oxidation (M)	_DAPM(Oxidation (M))TPKQI_		DAPM(1)TPKQI		DAPM(58)TPKQI	0	0	1		ENSG00000171456|ENST00000375687|ASXL1;nc|ENSG00000171456|Q8IXJ9-2|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7572326660156	2	508.757692	1015.50083	0.4067	0.00020691	-0.33555	-0.00017071	0.071158	3.6202E-05	508.75733413147327	30.238	1.2593	30.238	29.551	30.81	0					88	44	3	0	0	0	0.037019	1	5506	5506		57.722	19.748	1	405270			4885	6544	2420	2420	6794	6794		760			-0.00629896045404621
DAPMTPKQI	9	Oxidation (M)	_DAPM(Oxidation (M))TPKQI_		DAPM(1)TPKQI		DAPM(64)TPKQI	0	0	1		ENSG00000171456|ENST00000375687|ASXL1;nc|ENSG00000171456|Q8IXJ9-2|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7578430175781	2	508.757692	1015.50083	0.34678	0.00017643	-0.29115	-0.00014812	0.055627	2.83E-05	508.7574673378463	30.333	1.1738	30.361	29.547	30.721	0.027946					88	40	3	0	0	0	0.020233	2	5515	5515;5566		63.961	25.987	1	376580			4886	6544	2420	2420	6795;6796	6795		760			-0.00629896045404621
DAPMTPKQI	9	Oxidation (M)	_DAPM(Oxidation (M))TPKQI_		DAPM(1)TPKQI		DAPM(58)TPKQI	0	0	1		ENSG00000171456|ENST00000375687|ASXL1;nc|ENSG00000171456|Q8IXJ9-2|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.75732421875	2	508.757692	1015.50083	-0.023462	-1.1937E-05	0.094137	4.7893E-05	0.070674	3.5956E-05	508.7576693066659	30.227	0.97617	30.254	29.728	30.704	0.027157					73	33	3	0	0	0	0.037019	1	5513	5513		57.722	19.748	1	293230			4887	6544	2420	2420	6797	6797		760			-0.00629896045404621
DAPPPYSSI	9	Unmodified	_DAPPPYSSI_					0	0	0		ENSG00000131507|ENST00000253814|NDFIP1;ENST00000509436.1_1_5:141488539-141511465:+|nuORF;nc|ENSG00000131507|Q9BT67-2|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.72943115234375	2	473.729458	945.444362	0.37125	0.00017587	0.24929	0.0001181	0.62054	0.00029397	473.7294525976259	51.032	1.0531	51.032	50.595	51.648	0					98	38	3	0	0	0	4.0037E-07	3	11890	11847;11890;11938		164.52	90.092	1	1308900			4888	3574	2421	2421	6798;6799;6800	6799					-0.030542006104155917
DAPPPYSSI	9	Unmodified	_DAPPPYSSI_					0	0	0		ENSG00000131507|ENST00000253814|NDFIP1;ENST00000509436.1_1_5:141488539-141511465:+|nuORF;nc|ENSG00000131507|Q9BT67-2|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.729736328125	2	473.729458	945.444362	0.36057	0.00017081	0.22277	0.00010553	0.58334	0.00027635	473.7294505768584	51.043	1.1769	51.09	50.522	51.699	0.046574					103	43	3	0	0	0	4.0037E-07	3	11852	11852;11898;11946		164.52	90.092	1	1244500			4889	3574	2421	2421	6801;6802;6803	6801					-0.030542006104155917
DAPPPYSSI	9	Unmodified	_DAPPPYSSI_					0	0	0		ENSG00000131507|ENST00000253814|NDFIP1;ENST00000509436.1_1_5:141488539-141511465:+|nuORF;nc|ENSG00000131507|Q9BT67-2|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.729736328125	2	473.729458	945.444362	0.44052	0.00020869	0.25849	0.00012245	0.69901	0.00033114	473.72949334067323	51.068	1.3197	51.078	50.567	51.887	0.0095634					115	49	4	0	0	0	4.3382E-05	4	11854	11854;11900;11948;11999		149.99	85.758	1	1238600			4890	3574	2421	2421	6804;6805;6806;6807	6804					-0.030542006104155917
DAPPSRVSV	9	Unmodified	_DAPPSRVSV_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.2483215332031	2	464.248349	926.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.824	1	29.836	29.336	30.336	0.012266								0	0	0	0.19189	1	5384	5384		24.991	6.8446	1				4891	7211	2422	2422	6808	6808					0.015963103750550545
DAPPSRVSV	9	Unmodified	_DAPPSRVSV_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.24859619140625	2	464.248349	926.482145	-0.052965	-2.4589E-05	-0.48597	-0.00022561	-0.53894	-0.0002502	464.24859857078815	29.75	0.8458	29.763	29.421	30.267	0.013474					44	28	3	0	0	0	0.25714	1	5368	5368		15.248	2.206	1	204630			4892	7211	2422	2422	6809	6809					0.015963103750550545
DAPPSRVSV	9	Unmodified	_DAPPSRVSV_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	464.248349	926.482145	0.13666	6.3446E-05	0.094695	4.3962E-05	0.23136	0.00010741	464.2485333413388	29.77	0.84176	29.77	29.413	30.255	0	0.0035844	0.00019345	NaN	15.248	39	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163210			4893	7211	2422	2422							0.015963103750550545
DAPPVCHGS	9	Unmodified	_DAPPVCHGS_					0	0	0			REV__ENSG00000100647|ENST00000342745|SUSD6	REV__ENSG00000100647|ENST00000342745|SUSD6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.6925048828125	2	441.692352	881.370152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.227	1	72.227	71.727	72.727	0								0	0	0	0.22065	1	18401	18401		15.847	2.3393	1		+		4894	14219	2423	2423	6810	6810					-0.07527866973589425
DAPPVCHGS	9	Unmodified	_DAPPVCHGS_					0	0	0			REV__ENSG00000100647|ENST00000342745|SUSD6	REV__ENSG00000100647|ENST00000342745|SUSD6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.6925354003906	2	441.692352	881.370152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.174	1	72.231	71.731	72.731	0.056572								0	0	0	0.22065	1	18376	18376		15.847	4.2069	1		+		4895	14219	2423	2423	6811	6811					-0.07527866973589425
DAPPVCHGS	9	Unmodified	_DAPPVCHGS_					0	0	0			REV__ENSG00000100647|ENST00000342745|SUSD6	REV__ENSG00000100647|ENST00000342745|SUSD6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.69256591796875	2	441.692352	881.370152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.472	1	72.529	72.029	73.029	0.056427								0	0	0	0.22065	1	18468	18468		15.847	2.3393	1		+		4896	14219	2423	2423	6812	6812					-0.07527866973589425
DAPPVCHGS	9	Unmodified	_DAPPVCHGS_					0	0	0			REV__ENSG00000100647|ENST00000342745|SUSD6	REV__ENSG00000100647|ENST00000342745|SUSD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.6926574707031	2	441.692352	881.370152	0.29915	0.00013213	0.39898	0.00017623	0.69813	0.00030836	441.6924895457295	72.403	1.3383	72.375	72.009	73.347	-0.027267					113	47	3	0	0	0	0.21303	2	18425	18425;18473		21.747	4.8044	1	3167000	+		4897	14219	2423	2423	6813;6814	6813					-0.07527866973589425
DAPQTRQV	8	Unmodified	_DAPQTRQV_					0	0	0		ENST00000334554.11_1_22:20119331-20127004:+|nuORF	ENST00000334554.11_1_22:20119331-20127004:+|nuORF	ENST00000334554.11_1_22:20119331-20127004:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7381896972656	2	457.738148	913.461744	0.067657	3.0969E-05	-0.62164	-0.00028455	-0.55399	-0.00025358	457.738111174205	17.117	0.81847	17.117	16.81	17.628	0					101	28	5	0	0	0	0.071855	1	1501	1501		67.838	29.864	1	620220			4898	9472	2424	2424	6815	6815					0.001551397152525169
DAPQTRQV	8	Unmodified	_DAPQTRQV_					0	0	0		ENST00000334554.11_1_22:20119331-20127004:+|nuORF	ENST00000334554.11_1_22:20119331-20127004:+|nuORF	ENST00000334554.11_1_22:20119331-20127004:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7381286621094	2	457.738148	913.461744	-0.068813	-3.1498E-05	-0.424	-0.00019408	-0.49281	-0.00022558	457.73820326422293	17.295	0.81031	17.178	16.884	17.694	-0.11739					98	28	5	0	0	0	0.093768	1	1556	1556		61.602	28.816	1	659150			4899	9472	2424	2424	6816	6816					0.001551397152525169
DAPQTRQV	8	Unmodified	_DAPQTRQV_					0	0	0		ENST00000334554.11_1_22:20119331-20127004:+|nuORF	ENST00000334554.11_1_22:20119331-20127004:+|nuORF	ENST00000334554.11_1_22:20119331-20127004:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.73822021484375	2	457.738148	913.461744	0.20648	9.4513E-05	-0.82844	-0.00037921	-0.62196	-0.00028469	457.7380570904813	17.186	1.353	17.125	16.731	18.084	-0.060429					135	48	5	0	0	0	0.052935	1	1529	1529		76.825	38.851	1	643680			4900	9472	2424	2424	6817	6817					0.001551397152525169
DAPRIKKI	8	Unmodified	_DAPRIKKI_					0	0	0		ENSG00000163736|ENST00000296028|PPBP	ENSG00000163736|ENST00000296028|PPBP	ENSG00000163736|ENST00000296028|PPBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.8004150390625	2	470.800552	939.58655	-0.01573	-7.4057E-06	-0.12742	-5.9989E-05	-0.14315	-6.7395E-05	470.80039531579814	17.872	0.73486	17.872	17.628	18.363	0					54	24	3	0	0	0	0.27213	1	1776	1776		43.858	3.901	1	314740			4901	5724	2425	2425	6818	6818					0.11434056922428226
DAPTSPASV	9	Unmodified	_DAPTSPASV_					0	0	0		nc|ENSG00000140332|Q04726-7|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;nc|ENSG00000140332|Q04726|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;nc|ENSG00000140332|Q04726-2|TLE3;ENST00000557815.1_1_15:70350845-70351103:-|nuORF;ENST00000559826.1_1_15:70350468-70351103:-|nuORF	nc|ENSG00000140332|Q04726-7|TLE3	nc|ENSG00000140332|Q04726-7|TLE3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.7058410644531	2	422.705983	843.397412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.432	1	34.508	34.008	35.008	0.075306								0	0	0	0.0090064	1	6789	6789		81.89	13.809	1				4902	4295	2426	2426	6819	6819					-0.0305506016156869
DAPTSPRV	8	Unmodified	_DAPTSPRV_					0	0	0		ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7218322753906	2	421.721967	841.429381	-0.076485	-3.2255E-05	-0.043856	-1.8495E-05	-0.12034	-5.0751E-05	421.7218554171376	24.765	1.1393	24.765	24.22	25.359	0					87	38	3	0	0	0	0.11046	3	3839	3791;3839;3898		58.679	18.721	1	539830			4903	1945	2427	2427	6820;6821;6822	6821					0.0023235231224134623
DAPTSPRV	8	Unmodified	_DAPTSPRV_					0	0	0		ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.7216796875	2	421.721967	841.429381	-0.066286	-2.7954E-05	-0.23136	-9.7571E-05	-0.29765	-0.00012552	421.72184843877017	24.821	1.115	24.765	24.25	25.365	-0.055931					97	38	4	0	0	0	0.18459	2	3827	3827;3881		45.7	17.213	1	668540			4904	1945	2427	2427	6823;6824	6823					0.0023235231224134623
DAPTSPRV	8	Unmodified	_DAPTSPRV_					0	0	0		ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7217102050781	2	421.721967	841.429381	-0.22645	-9.5497E-05	0.01745	7.359E-06	-0.209	-8.8138E-05	421.7218804473315	24.729	1.0068	24.698	24.23	25.237	-0.031408					77	34	3	0	0	0	0.11046	2	3830	3830;3894		58.679	18.721	1	610950			4905	1945	2427	2427	6825;6826	6825					0.0023235231224134623
DAPTSVKI	8	Unmodified	_DAPTSVKI_					0	0	0		ENSG00000147654|ENST00000337573|EBAG9;nc|ENSG00000147654|O00559-2|EBAG9	ENSG00000147654|ENST00000337573|EBAG9	ENSG00000147654|ENST00000337573|EBAG9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.73406982421875	2	415.734543	829.454533	-0.91593	-0.00038078	0.14789	6.1485E-05	-0.76803	-0.0003193	415.734591272438	35.156	1.2533	35.156	34.839	36.093	0					102	45	4	0	0	0	0.024395	1	6986	6986		96.111	31.875	1	2996800			4906	4779	2428	2428	6827	6827					0.03298407114800739
DAPTSVKI	8	Unmodified	_DAPTSVKI_					0	0	0		ENSG00000147654|ENST00000337573|EBAG9;nc|ENSG00000147654|O00559-2|EBAG9	ENSG00000147654|ENST00000337573|EBAG9	ENSG00000147654|ENST00000337573|EBAG9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.7340393066406	2	415.734543	829.454533	-0.71804	-0.00029852	-0.15696	-6.5253E-05	-0.875	-0.00036377	415.73445778041304	35.035	1.1592	35.11	34.814	35.973	0.075306					94	41	4	0	0	0	0.034373	1	6967	6967		85.642	24.284	1	3379400			4907	4779	2428	2428	6828	6828					0.03298407114800739
DAPTSVKI	8	Unmodified	_DAPTSVKI_					0	0	0		ENSG00000147654|ENST00000337573|EBAG9;nc|ENSG00000147654|O00559-2|EBAG9	ENSG00000147654|ENST00000337573|EBAG9	ENSG00000147654|ENST00000337573|EBAG9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.734130859375	2	415.734543	829.454533	-0.77779	-0.00032336	0.094974	3.9484E-05	-0.68282	-0.00028387	415.7345546320032	35.034	1.0277	35.111	34.807	35.835	0.077377					91	36	4	0	0	0	0.016169	1	6949	6949		107.19	42.951	1	3159900			4908	4779	2428	2428	6829	6829					0.03298407114800739
DAPVALVVH	9	Unmodified	_DAPVALVVH_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.20318603515625	2	460.763635	919.512717	0.29701	0.00013685	-0.29682	-0.00013676	0.00019282	8.8846E-08	460.7634773468454	47.554	0.41932	47.554	47.352	47.771	0					24	14	2	0	0	0	0.031932	1	10815	10815		74.396	44.171	1	244010			4909	369	2429	2429	6830	6830					0.04974088760093309
DAPVALVVH	9	Unmodified	_DAPVALVVH_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.2032775878906	2	460.763635	919.512717	0.2673	0.00012316	-0.37392	-0.00017229	-0.10662	-4.9124E-05	460.76346859328356	47.584	0.398	47.632	47.374	47.772	0.047523					25	14	2	0	0	0	0.089551	1	10786	10786		44.407	26.272	1	274600			4910	369	2429	2429	6831	6831					0.04974088760093309
DAPVALVVH	9	Unmodified	_DAPVALVVH_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.2030944824219	2	460.763635	919.512717	0.55368	0.00025512	-0.27881	-0.00012847	0.27487	0.00012665	460.7635148511875	47.589	0.44843	47.632	47.349	47.797	0.043324					27	16	3	0	0	0	0.062269	1	10788	10788		53.576	36.633	1	246660			4911	369	2429	2429	6832	6832					0.04974088760093309
DAPYIFIV	8	Unmodified	_DAPYIFIV_					0	0	0		nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A;ENST00000562946.5_1_15:42519884-42565596:-|nuORF;TMEM87A|p.G263Vfs*32|1|0.14|ENSG00000103978|chr15:42237512-42237512|C/-|frameshift_variant;ENST00000569075.5_1_15:42525398-42565582:-|nuORF	nc|ENSG00000103978|Q8NBN3-3|TMEM87A	nc|ENSG00000103978|Q8NBN3-3|TMEM87A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.9591064453125	2	469.255111	936.49567	0.11115	5.2157E-05	0.090806	4.2611E-05	0.20195	9.4768E-05	469.2549731027521	90.109	0.97141	90.109	89.677	90.648	0					219	78	4	0	0	0	0.33245	1	23952	23952		19.439	4.8573	1	831040			4912	1858	2430	2430	6833	6833					0.024881681542865408
DAQEILRI	8	Unmodified	_DAQEILRI_					0	0	0		ENST00000572841.1_1_17:2279931-2282811:+|nuORF;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2	ENST00000572841.1_1_17:2279931-2282811:+|nuORF	ENST00000572841.1_1_17:2279931-2282811:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2724304199219	2	479.271824	956.529095	0.27592	0.00013224	-0.24902	-0.00011935	0.026903	1.2894E-05	479.27175943119965	55.163	0.65021	55.163	55.008	55.658	0					33	23	2	0	0	0	0.071855	1	13191	13191		67.838	0	1	630440			4913	4362	2431	2431	6834	6834					0.04909169926179402
DAQEILRI	8	Unmodified	_DAQEILRI_					0	0	0		ENST00000572841.1_1_17:2279931-2282811:+|nuORF;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2	ENST00000572841.1_1_17:2279931-2282811:+|nuORF	ENST00000572841.1_1_17:2279931-2282811:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.271824	956.529095	0.48996	0.00023482	-0.60935	-0.00029205	-0.11939	-5.7221E-05	479.271645135456	55.164	0.5039	55.235	54.997	55.501	0.070885	0.0072758	-0.00017746	NaN	67.838	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	386000			4914	4362	2431	2431							0.04909169926179402
DAQEILRI	8	Unmodified	_DAQEILRI_					0	0	0		ENST00000572841.1_1_17:2279931-2282811:+|nuORF;nc|ENSG00000141258|O43147|SGSM2;ENSG00000141258|ENST00000268989|SGSM2	ENST00000572841.1_1_17:2279931-2282811:+|nuORF	ENST00000572841.1_1_17:2279931-2282811:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.271824	956.529095	0.37562	0.00018003	-0.018438	-8.837E-06	0.35718	0.00017119	479.2717054493125	55.305	0.40378	55.286	55.08	55.484	-0.019077	0.05781	0.00038895	NaN	67.838	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476260			4915	4362	2431	2431							0.04909169926179402
DAQIIFLLT	9	Unmodified	_DAQIIFLLT_					0	0	0			REV__ENSG00000196778|ENST00000641528|OR52K1	REV__ENSG00000196778|ENST00000641528|OR52K1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.2838745117188	2	517.30005	1032.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.812	1	80.878	80.378	81.378	0.065094								0	0	0	0.18374	1	21011	21011		26.884	1.4843	1		+		4916	18686	2432	2432	6835	6835					0.07055797762859584
DAQLLDALHPA	11	Unmodified	_DAQLLDALHPA_					0	0	0		ENST00000340634.4_1_3:142681054-142682041:-|nuORF	ENST00000340634.4_1_3:142681054-142682041:-|nuORF	ENST00000340634.4_1_3:142681054-142682041:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3485717773438	2	582.306395	1162.59824	-0.076329	-4.4447E-05	-1.9401	-0.0011297	-2.0164	-0.0011742	582.3053490047182	13.537	0.63957	13.438	13.129	13.768	-0.099291					43	22	3	0	0	0	0.33324	1	382	382		1.1933	0.39971	1	89923			4917	9517	2433	2433	6836	6836					0.023442091550805344
DAQRYKRKL	9	Unmodified	_DAQRYKRKL_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3424072265625	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.28	1	119.26	118.76	119.76	-0.024147								0	0	0	0.2672	1	30795	30795		0.52476	0	1				4918	1843	2434	2434	6837	6837					0.09147016757128767
DAQVKKMH	8	Unmodified	_DAQVKKMH_					0	0	0		ENST00000402742.1_1_6:85997321-86000002:+|nuORF	ENST00000402742.1_1_6:85997321-86000002:+|nuORF	ENST00000402742.1_1_6:85997321-86000002:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7367858886719	2	478.752744	955.490935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.327	1	79.298	78.798	79.798	-0.028931								0	0	0	0.35251	1	20549	20549		13.508	0.97634	1				4919	10202	2435	2435	6838	6838					0.011409607398718435
DAREIVNNV	9	Unmodified	_DAREIVNNV_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.27001953125	2	515.269813	1028.52507	0.25279	0.00013025	-0.30482	-0.00015706	-0.052028	-2.6808E-05	515.2696544918579	40.031	1.2646	40.031	39.695	40.96	0					91	45	3	0	0	0	0.038672	2	8463	8463;8512		57.108	21.011	1	3291000			4920	1077	2436	2436	6839;6840	6839					0.011950804324669662
DARELELVI	9	Unmodified	_DARELELVI_					0	0	0		nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1;ENSG00000138411|ENST00000644978|HECW2	nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2980346679688	2	529.298039	1056.58152	0.48714	0.00025784	-0.31808	-0.00016836	0.16906	8.9483E-05	529.297894110237	66.994	0.87719	66.994	66.659	67.536	0					73	30	3	0	0	0	0.11201	1	16805	16805		36.506	11.107	1	1052400			4921	297;4148	2437	2437	6841	6841					0.0554970826913177
DARELELVI	9	Unmodified	_DARELELVI_					0	0	0		nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1;ENSG00000138411|ENST00000644978|HECW2	nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2980346679688	2	529.298039	1056.58152	0.3827	0.00020256	-0.1038	-5.4941E-05	0.2789	0.00014762	529.2979661428866	66.819	1.0093	66.903	66.6	67.609	0.083832					71	35	3	0	0	0	0.10059	1	16730	16730		38.176	3.7738	1	1043700			4922	297;4148	2437	2437	6842	6842					0.0554970826913177
DARELELVI	9	Unmodified	_DARELELVI_					0	0	0		nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1;ENSG00000138411|ENST00000644978|HECW2	nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.298095703125	2	529.298039	1056.58152	0.30206	0.00015988	-0.17154	-9.0797E-05	0.13052	6.9082E-05	529.2979935392099	66.947	0.81946	66.934	66.634	67.453	-0.013596					61	28	3	0	0	0	0.074552	2	16796	16746;16796		43.772	13.136	1	1001700			4923	297;4148	2437	2437	6843;6844	6844					0.0554970826913177
DAREQQQQI	9	Unmodified	_DAREQQQQI_					0	0	0		nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B;ENST00000513162.5_1_5:177569546-177570729:+|nuORF;ENST00000507575.5_1_5:177558043-177570729:+|nuORF	nc|ENSG00000145916|Q96G75-2|RMND5B	nc|ENSG00000145916|Q96G75-2|RMND5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2758178710938	2	558.275626	1114.5367	0.31247	0.00017444	0.24338	0.00013587	0.55585	0.00031032	558.2757615077718	20.24	0.47761	20.24	20.092	20.57	0					34	17	3	0	0	0	0.069258	1	2477	2477		45.74	14.472	1	210610			4924	4680	2438	2438	6845	6845					-0.01598722544190423
DAREQQQQI	9	Unmodified	_DAREQQQQI_					0	0	0		nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B;ENST00000513162.5_1_5:177569546-177570729:+|nuORF;ENST00000507575.5_1_5:177558043-177570729:+|nuORF	nc|ENSG00000145916|Q96G75-2|RMND5B	nc|ENSG00000145916|Q96G75-2|RMND5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2767944335938	2	558.275626	1114.5367	0.5422	0.0003027	0.44446	0.00024813	0.98666	0.00055083	558.2758146842999	20.458	0.73371	20.348	20.074	20.808	-0.11003					37	26	2	0	0	0	0.13296	2	2514	2514;2573		33.445	13.03	1	190710			4925	4680	2438	2438	6846;6847	6846					-0.01598722544190423
DAREQQQQI	9	Unmodified	_DAREQQQQI_					0	0	0		nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B;ENST00000513162.5_1_5:177569546-177570729:+|nuORF;ENST00000507575.5_1_5:177558043-177570729:+|nuORF	nc|ENSG00000145916|Q96G75-2|RMND5B	nc|ENSG00000145916|Q96G75-2|RMND5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.275146484375	2	558.275626	1114.5367	0.5708	0.00031866	0.11437	6.3851E-05	0.68517	0.00038251	558.2756324612843	20.327	0.60417	20.275	20.009	20.613	-0.05291					37	21	2	0	0	0	0.069258	1	2474	2474		45.74	14.472	1	171820			4926	4680	2438	2438	6848	6848					-0.01598722544190423
DARIGSFTI	9	Unmodified	_DARIGSFTI_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2579650878906	2	490.263999	978.513445	-0.23065	-0.00011308	0.682	0.00033436	0.45134	0.00022128	490.2645253538999	59.927	0.33548	60.022	59.741	60.077	0.095089					15	11	2	0	0	0	0.07848	1	14625	14625		42.312	0.21792	1	494530			4927	5779	2439	2439	6849	6849					0.023328834091557837
DARINAYI	8	Unmodified	_DARINAYI_					0	0	0		nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B;nc|ENSG00000089177|Q96L93-2|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2514953613281	2	468.250892	934.48723	0.37889	0.00017741	-0.064808	-3.0346E-05	0.31408	0.00014707	468.2508549763424	47.73	0.32853	47.778	47.565	47.893	0.04752					18	11	2	0	0	0	0.20663	1	10860	10860		41.84	11.203	1	498740			4928	1352	2440	2440	6850	6850					0.017366142376545213
DARINAYI	8	Unmodified	_DARINAYI_					0	0	0		nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B;nc|ENSG00000089177|Q96L93-2|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.8008117675781	2	468.250892	934.48723	0.48624	0.00022768	-0.29363	-0.00013749	0.19261	9.0189E-05	468.2506927258978	47.697	0.34478	47.74	47.53	47.875	0.04332					19	12	2	0	0	0	0.30795	1	10845	10845		30.637	14.789	1	443860			4929	1352	2440	2440	6851	6851					0.017366142376545213
DARKLISI	8	Unmodified	_DARKLISI_					0	0	0		ENSG00000167202|ENST00000300584|TBC1D2B;ENST00000491479.1_1_15:78290504-78294097:-|nuORF	ENSG00000167202|ENST00000300584|TBC1D2B	ENSG00000167202|ENST00000300584|TBC1D2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.284912109375	2	458.284734	914.554916	-0.129	-5.9118E-05	0.53455	0.00024498	0.40555	0.00018586	458.2848860489291	41.073	0.73546	41.073	40.768	41.504	0					73	26	4	0	0	0	0.018967	1	8792	8792		103.42	18.147	1	3862500			4930	6158	2441	2441	6852	6852					0.09422064168484212
DARKLISI	8	Unmodified	_DARKLISI_					0	0	0		ENSG00000167202|ENST00000300584|TBC1D2B;ENST00000491479.1_1_15:78290504-78294097:-|nuORF	ENSG00000167202|ENST00000300584|TBC1D2B	ENSG00000167202|ENST00000300584|TBC1D2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.28485107421875	2	458.284734	914.554916	0.16913	7.751E-05	0.14784	6.7755E-05	0.31697	0.00014526	458.28473793418726	40.867	0.76558	40.96	40.693	41.459	0.09267					81	28	4	0	0	0	0.026582	2	8738	8738;8785		93.166	18.194	1	3972900			4931	6158	2441	2441	6853;6854	6853					0.09422064168484212
DARKLISI	8	Unmodified	_DARKLISI_					0	0	0		ENSG00000167202|ENST00000300584|TBC1D2B;ENST00000491479.1_1_15:78290504-78294097:-|nuORF	ENSG00000167202|ENST00000300584|TBC1D2B	ENSG00000167202|ENST00000300584|TBC1D2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2847595214844	2	458.284734	914.554916	-0.011767	-5.3925E-06	0.35439	0.00016241	0.34263	0.00015702	458.28479793080066	40.809	0.78341	40.908	40.641	41.425	0.099403					79	28	4	0	0	0	0.026582	2	8706	8706;8754		93.166	18.237	1	4028800			4932	6158	2441	2441	6855;6856	6855					0.09422064168484212
DARKTLDSV	9	Unmodified	_DARKTLDSV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7722473144531	2	502.772188	1003.52982	0.28526	0.00014342	-0.4227	-0.00021252	-0.13743	-6.9097E-05	502.7720028353009	25.06	0.5972	25.06	24.762	25.359	0					52	20	3	0	0	0	0.048637	2	3954	3909;3954		53.404	13.165	1	417090			4933	5487	2442	2442	6857;6858	6858					0.0281996457523519
DARKTLDSV	9	Unmodified	_DARKTLDSV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7723693847656	2	502.772188	1003.52982	0.15168	7.6259E-05	-0.14711	-7.3965E-05	0.0045621	2.2937E-06	502.7721721313653	25.18	0.45204	25.124	24.862	25.314	-0.055931					42	15	3	0	0	0	0.01909	2	3995	3947;3995		65.474	17.879	1	461890			4934	5487	2442	2442	6859;6860	6860					0.0281996457523519
DARKTLDSV	9	Unmodified	_DARKTLDSV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.772216796875	2	502.772188	1003.52982	-0.084081	-4.2274E-05	0.099454	5.0003E-05	0.015372	7.7288E-06	502.7722290467195	25.11	0.61334	25.079	24.765	25.378	-0.031408					52	20	4	0	0	0	0.020233	2	3972	3923;3972		63.961	27.454	1	407130			4935	5487	2442	2442	6861;6862	6862					0.0281996457523519
DARLFTEKI	9	Unmodified	_DARLFTEKI_					0	0	0		ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8062744140625	2	546.806031	1091.59751	0.54605	0.00029858	0.072458	3.962E-05	0.61851	0.0003382	546.8059479236376	45.201	0.65071	45.201	44.935	45.586	0					39	23	2	0	0	0	0.048871	1	10086	10086		53.317	7.6171	1	561200			4936	3399	2443	2443	6863	6863					0.05537414506034111
DARLFTEKI	9	Unmodified	_DARLFTEKI_					0	0	0		ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.80615234375	2	546.806031	1091.59751	0.70177	0.00038373	0.10655	5.8261E-05	0.80832	0.00044199	546.80603391236	44.976	0.58616	45.051	44.808	45.394	0.07505					40	21	3	0	0	0	0.07848	1	10021	10021		42.312	7.3804	1	734970			4937	3399	2443	2443	6864	6864					0.05537414506034111
DARLFTEKI	9	Unmodified	_DARLFTEKI_					0	0	0		ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	546.806031	1091.59751	0.63641	0.00034799	0.18806	0.00010283	0.82447	0.00045083	546.8059215707129	44.914	0.5537	44.982	44.765	45.319	0.068569	-0.095555	6.7545E-05	NaN	53.317	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	672760			4938	3399	2443	2443							0.05537414506034111
DARPSVNAV	9	Unmodified	_DARPSVNAV_					0	0	0		ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1;nc|ENSG00000087053|Q13614-2|MTMR2;ENSG00000087053|ENST00000346299|MTMR2	ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7459411621094	2	464.745973	927.477394	0.17842	8.2921E-05	-0.16123	-7.493E-05	0.017194	7.9908E-06	464.74586103918324	29.176	0.79466	29.176	28.924	29.718	0					83	28	4	0	0	0	0.0028542	3	5204	5158;5204;5257		103.42	20.89	1	2236800			4939	6510	2444	2444	6865;6866;6867	6866					0.010754262322734576
DARPSVNAV	9	Unmodified	_DARPSVNAV_					0	0	0		ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1;nc|ENSG00000087053|Q13614-2|MTMR2;ENSG00000087053|ENST00000346299|MTMR2	ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7460021972656	2	464.745973	927.477394	0.0274	1.2734E-05	0.18037	8.3824E-05	0.20777	9.6559E-05	464.746046153205	29.113	1.1482	29.125	28.884	30.032	0.012266					93	39	4	0	0	0	0.0041491	3	5185	5139;5185;5275		93.166	10.637	1	2554300			4940	6510	2444	2444	6868;6869;6870	6869					0.010754262322734576
DARPSVNAV	9	Unmodified	_DARPSVNAV_					0	0	0		ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1;nc|ENSG00000087053|Q13614-2|MTMR2;ENSG00000087053|ENST00000346299|MTMR2	ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.74603271484375	2	464.745973	927.477394	0.050593	2.3513E-05	0.018196	8.4566E-06	0.068789	3.1969E-05	464.7459506375309	29.17	0.80689	29.183	28.907	29.714	0.013474					82	28	4	0	0	0	0.0073901	4	5188	5143;5188;5230;5290		83.429	10.461	1	2523000			4941	6510	2444	2444	6871;6872;6873;6874	6872					0.010754262322734576
DARRRQEQI	9	Unmodified	_DARRRQEQI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3184204101562	2	586.31816	1170.62177	-0.0085489	-5.0123E-06	0.29034	0.00017023	0.28179	0.00016522	586.3182966608258	13.845	0.31578	13.779	13.661	13.977	-0.066068					22	10	3	0	0	0	0.3208	1	561	561		5.7319	1.4026	1	124340			4942	12859	2445	2445	6875	6875					0.043280677122766065
DARTFYII	8	Unmodified	_DARTFYII_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7691650390625	2	499.768917	997.523281	0.2016	0.00010075	0.30275	0.0001513	0.50435	0.00025206	499.7690755266934	64.962	0.84468	64.962	64.673	65.518	0					74	30	3	0	0	0	0.12475	1	16186	16186		56.177	16.227	1	2225900			4943	7218	2446	2446	6876	6876					0.024420714145321654
DARTFYII	8	Unmodified	_DARTFYII_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7691650390625	2	499.768917	997.523281	0.30329	0.00015157	0.22251	0.0001112	0.5258	0.00026278	499.76907182226427	64.875	0.99976	64.964	64.63	65.629	0.089813					84	36	4	0	0	0	0.13814	2	16149	16149;16196		53.833	15.657	1	2420200			4944	7218	2446	2446	6877;6878	6877					0.024420714145321654
DARTFYII	8	Unmodified	_DARTFYII_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.76910400390625	2	499.768917	997.523281	0.11955	5.9748E-05	0.37704	0.00018843	0.49659	0.00024818	499.7691121999823	64.963	0.81624	64.952	64.632	65.448	-0.011337					69	29	3	0	0	0	0.12475	2	16174	16174;16220		56.177	16.227	1	2438400			4945	7218	2446	2446	6879;6880	6879					0.024420714145321654
DARVAITI	8	Unmodified	_DARVAITI_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1;nc|ENSG00000141576|Q96PX1-2|RNF157;ENSG00000141576|ENST00000269391|RNF157	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.7561340332031	2	429.75581	857.497067	0.064395	2.7674E-05	-0.19126	-8.2194E-05	-0.12686	-5.452E-05	429.7558678136135	49.359	1.7432	49.359	48.995	50.738	0					150	63	5	0	0	0	0.026963	4	11306	11306;11349;11395;11447		92.653	27.418	1	18162000			4946	1788	2447	2447	6881;6882;6883;6884	6881					0.06261802243022885
DARVAITI	8	Unmodified	_DARVAITI_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1;nc|ENSG00000141576|Q96PX1-2|RNF157;ENSG00000141576|ENST00000269391|RNF157	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.7559814453125	2	429.75581	857.497067	-0.078737	-3.3838E-05	-0.077071	-3.3122E-05	-0.15581	-6.696E-05	429.7559030766042	49.333	1.6934	49.377	49.073	50.766	0.044891					142	62	5	0	0	0	0.040925	4	11352	11305;11352;11396;11444		82.529	23.85	1	20502000			4947	1788	2447	2447	6885;6886;6887;6888	6886					0.06261802243022885
DARVAITI	8	Unmodified	_DARVAITI_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1;nc|ENSG00000141576|Q96PX1-2|RNF157;ENSG00000141576|ENST00000269391|RNF157	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.7560119628906	2	429.75581	857.497067	-0.16897	-7.2617E-05	0.031125	1.3376E-05	-0.13785	-5.9241E-05	429.75595011389026	49.311	1.8153	49.343	49.014	50.829	0.032043					144	66	4	0	0	0	0.026963	5	11299	11299;11341;11386;11436;11488		92.653	27.418	1	19025000			4948	1788	2447	2447	6889;6890;6891;6892;6893	6889					0.06261802243022885
DASALMSLFLY	11	Unmodified	_DASALMSLFLY_					0	0	0			REV__nc|ENSG00000176748|P0C646|OR52Z1P	REV__nc|ENSG00000176748|P0C646|OR52Z1P	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.8840637207031	3	410.874014	1229.60021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.596	1	15.596	15.096	16.096	0								0	0	0	0.36449	1	1074	1074		5.0475	0	1		+		4949	23100	2448	2448	6894	6894					-0.005404981513038365
DASGNMHNSWI	11	Unmodified	_DASGNMHNSWI_					0	0	0		nc|ENSG00000054282|Q86SQ7-2|SDCCAG8;nc|ENSG00000054282|Q86SQ7-3|SDCCAG8;ENSG00000054282|ENST00000366541|SDCCAG8	nc|ENSG00000054282|Q86SQ7-2|SDCCAG8	nc|ENSG00000054282|Q86SQ7-2|SDCCAG8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2385559082031	3	411.176867	1230.50877	-0.21628	-8.8929E-05	1.8401	0.00075659	1.6238	0.00066766	411.1778777888691	23.624	0.4669	23.624	23.362	23.829	0					26	15	2	0	0	0	0.33085	1	3536	3536		2.8433	0	1	52897			4950	686	2449	2449	6895	6895					-0.09726368795918461
DASGNMHNSWI	11	Unmodified	_DASGNMHNSWI_					0	0	0		nc|ENSG00000054282|Q86SQ7-2|SDCCAG8;nc|ENSG00000054282|Q86SQ7-3|SDCCAG8;ENSG00000054282|ENST00000366541|SDCCAG8	nc|ENSG00000054282|Q86SQ7-2|SDCCAG8	nc|ENSG00000054282|Q86SQ7-2|SDCCAG8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.22705078125	3	411.176867	1230.50877	0.21704	8.9242E-05	0.72079	0.00029637	0.93783	0.00038561	411.17728323191847	23.861	0.54334	23.822	23.506	24.049	-0.038927					24	18	2	0	0	0	0.33085	1	3580	3580		2.8433	0	1	30100			4951	686	2449	2449	6896	6896					-0.09726368795918461
DASKLKLT	8	Unmodified	_DASKLKLT_					0	0	0		nc|ENSG00000054282|Q86SQ7-4|SDCCAG8	nc|ENSG00000054282|Q86SQ7-4|SDCCAG8	nc|ENSG00000054282|Q86SQ7-4|SDCCAG8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2632751464844	2	438.263468	874.512382	0.085055	3.7276E-05	-0.55761	-0.00024438	-0.47255	-0.0002071	438.2632747274315	38.423	1.5355	38.514	38.183	39.718	0.090881					121	55	4	0	0	0	0.45942	1	7975	7975		2.5775	0	1	1493200			4952	12575	2450	2450	6897	6897					0.07010669040209905
DASKLKLT	8	Unmodified	_DASKLKLT_					0	0	0		nc|ENSG00000054282|Q86SQ7-4|SDCCAG8	nc|ENSG00000054282|Q86SQ7-4|SDCCAG8	nc|ENSG00000054282|Q86SQ7-4|SDCCAG8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.2633056640625	2	438.263468	874.512382	0.15746	6.9009E-05	-0.3241	-0.00014204	-0.16664	-7.3031E-05	438.26323893807177	38.529	1.9678	38.627	38.176	40.144	0.097527					108	70	2	0	0	0	0.45942	1	7991	7991		2.5775	0	1	1240900			4953	12575	2450	2450	6898	6898					0.07010669040209905
DASLEHLKS	9	Unmodified	_DASLEHLKS_					0	0	0		nc|ENSG00000108306|Q96IG2-2|FBXL20;ENSG00000108306|ENST00000264658|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	nc|ENSG00000108306|Q96IG2-2|FBXL20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.80877685546875	2	500.258914	998.503274	0.18848	9.4287E-05	-0.32387	-0.00016202	-0.13539	-6.7731E-05	500.25851763824704	31.548	0.61576	31.591	31.237	31.852	0.042366					30	21	2	0	0	0	0.25779	1	5804	5804		6.2058	0	1	311060			4954	2173	2451	2451	6899	6899					0.0039627568389732915
DASLLKKV	8	Unmodified	_DASLLKKV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2732238769531	2	437.273835	872.533118	-0.2325	-0.00010167	-1.1437	-0.00050011	-1.3762	-0.00060177	437.2732388722322	31.367	0.41749	31.409	31.156	31.574	0.042364					25	14	2	0	0	0	0.26342	1	5870	5870		47.749	17.112	1	245100			4955	3491	2452	2452	6900	6900					0.09175259419907889
DASLLKKV	8	Unmodified	_DASLLKKV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	437.273835	872.533118	-0.21564	-9.4295E-05	-1.3036	-0.00057002	-1.5192	-0.00066432	437.2731092676965	31.378	0.38263	31.378	31.171	31.553	0	-0.021353	3.7757E-05	NaN	47.749	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189880			4956	3491	2452	2452							0.09175259419907889
DASLLKKV	8	Unmodified	_DASLLKKV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	437.273835	872.533118	-0.0199	-8.7019E-06	-1.5454	-0.00067574	-1.5653	-0.00068445	437.2730336492655	31.37	0.35732	31.411	31.15	31.507	0.040991	0.011471	-0.00017368	NaN	47.749	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257660			4957	3491	2452	2452							0.09175259419907889
DASLQPRNV	9	Unmodified	_DASLQPRNV_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2647399902344	2	500.26453	998.514508	0.40881	0.00020451	0.42878	0.0002145	0.83759	0.00041901	500.26448314523617	30.529	0.86797	30.529	30.194	31.062	0					64	30	3	0	0	0	0.0073901	1	5612	5612		83.429	45.253	1	1386400			4958	3147	2453	2453	6901	6901					0.015190977780434878
DASLQPRNV	9	Unmodified	_DASLQPRNV_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2647399902344	2	500.26453	998.514508	0.40458	0.0002024	0.48267	0.00024146	0.88726	0.00044386	500.26449221225795	30.486	0.79122	30.514	30.246	31.037	0.027946					65	27	5	0	0	0	0.001957	3	5602	5555;5602;5649		110.55	68.713	1	1368800			4959	3147	2453	2453	6902;6903;6904	6903					0.015190977780434878
DASLQPRNV	9	Unmodified	_DASLQPRNV_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2646789550781	2	500.26453	998.514508	0.093518	4.6784E-05	0.75532	0.00037786	0.84883	0.00042464	500.26462452173814	30.495	0.80658	30.522	30.25	31.056	0.027157					66	28	3	0	0	0	0.0045319	2	5600	5553;5600		90.135	56.033	1	1500900			4960	3147	2453	2453	6905;6906	6906					0.015190977780434878
DASLRLLL	8	Unmodified	_DASLRLLL_					0	0	0		nc|ENSG00000099364|Q6PCT2-2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7791748046875	2	450.779285	899.544017	0.44425	0.00020026	-0.42562	-0.00019186	0.018628	8.3973E-06	450.778983037379	64.192	0.81184	64.192	63.915	64.727	0					60	29	3	0	0	0	0.22	1	15983	15983		39.957	0	1	881900			4961	1487	2454	2454	6907	6907					0.09022661794188025
DASLVFKV	8	Unmodified	_DASLVFKV_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602816-23603164:-|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.7527160644531	2	439.752736	877.490919	0.12088	5.3158E-05	0.026991	1.1869E-05	0.14787	6.5027E-05	439.7526614264084	58.031	1.7522	58.031	57.693	59.445	0					147	61	4	0	0	0	0.0030528	4	14056	14007;14056;14105;14150		131.27	30.896	1	6342000			4962	5802	2455	2455	6908;6909;6910;6911	6909					0.04727284011528354
DASLVFKV	8	Unmodified	_DASLVFKV_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602816-23603164:-|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.75262451171875	2	439.752736	877.490919	0.11462	5.0403E-05	-0.040868	-1.7972E-05	0.073747	3.2431E-05	439.7526332039135	57.9	1.6024	57.986	57.63	59.233	0.085621					147	57	5	0	0	0	0.00098232	3	14010	13959;14010;14054		144.35	43.979	1	6695700			4963	5802	2455	2455	6912;6913;6914	6913					0.04727284011528354
DASLVFKV	8	Unmodified	_DASLVFKV_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602816-23603164:-|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.7527160644531	2	439.752736	877.490919	0.32202	0.00014161	-0.14536	-6.392E-05	0.17667	7.7691E-05	439.7525793175236	58.084	1.5046	58.067	57.741	59.245	-0.0172					135	54	4	0	0	0	0.011048	4	14050	13998;14050;14099;14235		115.69	26.788	1	6368600			4964	5802	2455	2455	6915;6916;6917;6918	6916					0.04727284011528354
DASPPPVKI	9	Unmodified	_DASPPPVKI_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.2635498046875	2	462.263468	922.512382	0.19026	8.7952E-05	0.21592	9.9812E-05	0.40618	0.00018776	462.2634446280696	40.425	0.99023	40.425	39.996	40.986	0					89	35	3	0	0	0	0.0033114	3	8650	8600;8650;8703		99.799	51.453	1	1180500			4965	4464	2456	2456	6919;6920;6921	6920					0.04802669040236651
DASPPPVKI	9	Unmodified	_DASPPPVKI_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.2635192871094	2	462.263468	922.512382	0.24982	0.00011548	0.18651	8.6215E-05	0.43633	0.0002017	462.2634600063319	40.4	0.91122	40.493	39.994	40.905	0.09267					80	32	3	0	0	0	0.0037772	3	8613	8570;8613;8667		96.111	47.765	1	1232100			4966	4464	2456	2456	6922;6923;6924	6923					0.04802669040236651
DASPPPVKI	9	Unmodified	_DASPPPVKI_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.2633056640625	2	462.263468	922.512382	0.30144	0.00013935	0.084656	3.9133E-05	0.3861	0.00017848	462.2633702104581	40.331	0.88284	40.43	39.977	40.86	0.099407					82	31	3	0	0	0	0.0033114	3	8552	8552;8600;8650		99.799	51.453	1	1212200			4967	4464	2456	2456	6925;6926;6927	6925					0.04802669040236651
DASSHDTVE	9	Unmodified	_DASSHDTVE_					0	0	0		IL15|p.I107S|1|0.3|ENSG00000164136|chr4:141729926-141729926|T/G|missense_variant	IL15|p.I107S|1|0.3|ENSG00000164136|chr4:141729926-141729926|T/G|missense_variant	IL15|p.I107S|1|0.3|ENSG00000164136|chr4:141729926-141729926|T/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2896728515625	2	480.698886	959.383219	0.36414	0.00017504	1.0802	0.00051924	1.4443	0.00069428	480.699370171286	51.257	0.52966	51.257	50.978	51.508	0					28	19	2	0	0	0	0.2451	1	11936	11936		3.5965	0	1	307030			4968	12428	2457	2457	6928	6928					-0.09809757380526207
DASSHDTVE	9	Unmodified	_DASSHDTVE_					0	0	0		IL15|p.I107S|1|0.3|ENSG00000164136|chr4:141729926-141729926|T/G|missense_variant	IL15|p.I107S|1|0.3|ENSG00000164136|chr4:141729926-141729926|T/G|missense_variant	IL15|p.I107S|1|0.3|ENSG00000164136|chr4:141729926-141729926|T/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.28985595703125	2	480.698886	959.383219	0.29212	0.00014042	1.3288	0.00063875	1.6209	0.00077917	480.69937240836225	51.192	0.41156	51.238	51.092	51.504	0.046574					27	15	2	0	0	0	0.25066	1	11928	11928		7.2892	2.0586	1	260430			4969	12428	2457	2457	6929	6929					-0.09809757380526207
DASSHDTVE	9	Unmodified	_DASSHDTVE_					0	0	0		IL15|p.I107S|1|0.3|ENSG00000164136|chr4:141729926-141729926|T/G|missense_variant	IL15|p.I107S|1|0.3|ENSG00000164136|chr4:141729926-141729926|T/G|missense_variant	IL15|p.I107S|1|0.3|ENSG00000164136|chr4:141729926-141729926|T/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2897644042969	2	480.698886	959.383219	0.38486	0.000185	0.87438	0.00042032	1.2592	0.00060532	480.6993167974832	51.26	0.46377	51.27	51.042	51.506	0.0095634					29	17	2	0	0	0	0.24688	1	11926	11926		14.838	3.198	1	289800			4970	12428	2457	2457	6930	6930					-0.09809757380526207
DASYPLCPE	9	Unmodified	_DASYPLCPE_					0	0	0			REV__nc|ENSG00000120549|Q5T5P2-2|KIAA1217	REV__nc|ENSG00000120549|Q5T5P2-2|KIAA1217	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2817687988281	2	497.71295	993.411348	0.63042	0.00031377	0.67604	0.00033647	1.3065	0.00065024	497.7132400478738	78.536	0.53072	78.595	78.336	78.867	0.058151					33	19	3	0	0	0	0.25066	1	20316	20316		11.64	11.64	1	232460	+		4971	15087	2458	2458	6931	6931					-0.0856215072477653
DATASFNTI	9	Unmodified	_DATASFNTI_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2;nc|ENSG00000165338|Q5U5R9-2|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7872009277344	2	470.224539	938.434526	0.3825	0.00017986	0.048202	2.2666E-05	0.4307	0.00020252	470.2245435498599	54.204	0.62499	54.188	53.865	54.49	-0.015919					26	21	2	0	0	0	0.19888	1	12845	12845		26.021	12.115	1	159410			4972	5952	2459	2459	6932	6932					-0.03715388615808024
DATATIVVI	9	Unmodified	_DATATIVVI_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.76348876953125	2	451.7633	901.512048	0.20225	9.1369E-05	0.54377	0.00024566	0.74602	0.00033702	451.76356527846366	70.633	0.69277	70.633	70.35	71.043	0					58	24	3	0	0	0	0.0017972	4	17933	17868;17891;17933;17975		112.59	45.249	1	1552300			4973	1740	2460	2460	6933;6934;6935;6936	6935					0.057352493203779886
DATATIVVI	9	Unmodified	_DATATIVVI_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7636413574219	2	451.7633	901.512048	0.19552	8.8328E-05	0.49768	0.00022483	0.6932	0.00031316	451.76356901016095	70.551	0.71739	70.611	70.351	71.069	0.060783					71	25	4	0	0	0	0.0017972	2	17904	17857;17904		112.59	45.249	1	1414600			4974	1740	2460	2460	6937;6938	6938					0.057352493203779886
DATATIVVI	9	Unmodified	_DATATIVVI_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.277587890625	2	451.7633	901.512048	0.26571	0.00012004	0.35368	0.00015978	0.61939	0.00027982	451.76347958808816	70.626	0.64528	70.601	70.353	70.999	-0.024872					59	22	3	0	0	0	0.0032391	4	17865	17865;17869;17916;17958		100.37	42.9	1	1395400			4975	1740	2460	2460	6939;6940;6941;6942	6939					0.057352493203779886
DATFEESSEHF	11	Unmodified	_DATFEESSEHF_					0	0	0		AFTPH|p.A691Efs*6|1|0.07|ENSG00000119844|chr2:64567697-64567698|-/AAGAGAA|frameshift_variant;nc|ENSG00000119844|Q6ULP2-7|AFTPH;ENST00000498706.5_1_2:64778608-64806757:+|nuORF;nc|ENSG00000119844|Q6ULP2-8|AFTPH;nc|ENSG00000119844|Q6ULP2-6|AFTPH;ENSG00000119844|ENST00000409933|AFTPH;nc|ENSG00000119844|Q6ULP2-9|AFTPH	AFTPH|p.A691Efs*6|1|0.07|ENSG00000119844|chr2:64567697-64567698|-/AAGAGAA|frameshift_variant	AFTPH|p.A691Efs*6|1|0.07|ENSG00000119844|chr2:64567697-64567698|-/AAGAGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.5108947753906	3	433.510568	1297.50988	-0.007106	-3.0805E-06	0.022868	9.9133E-06	0.015761	6.8328E-06	433.51066465346616	39.913	0.79537	40.012	39.736	40.532	0.099407					88	28	4	0	0	0	0.42863	1	8436	8436		7.4771	2.5801	1	837520			4976	19	2461	2461	6943	6943					-0.12697875946059867
DATLTSVI	8	Unmodified	_DATLTSVI_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2262268066406	2	410.226551	818.438549	0.082915	3.4014E-05	0.27111	0.00011122	0.35403	0.00014523	410.2265306385907	63.692	0.74414	63.692	63.413	64.158	0					49	26	3	0	0	0	0.034972	2	15766	15766;15794		85.357	31.781	1	403440			4977	451	2462	2462	6944;6945	6944					0.022067008779117714
DATLTSVI	8	Unmodified	_DATLTSVI_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.226806640625	2	410.226551	818.438549	0.25294	0.00010376	0.0017871	7.3313E-07	0.25472	0.00010449	410.22646487556597	63.634	0.65307	63.73	63.416	64.069	0.095722					47	22	3	0	0	0	0.034972	2	15753	15753;15803		85.357	24.967	1	345130			4978	451	2462	2462	6946;6947	6946					0.022067008779117714
DATLTSVI	8	Unmodified	_DATLTSVI_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2264099121094	2	410.226551	818.438549	0.28073	0.00011516	-0.010931	-4.4841E-06	0.2698	0.00011068	410.22642271116763	63.66	0.74512	63.651	63.459	64.204	-0.0085526					38	26	2	0	0	0	0.057992	1	15773	15773		74.423	14.033	1	342890			4979	451	2462	2462	6948	6948					0.022067008779117714
DATPLSSPRH	10	Unmodified	_DATPLSSPRH_					0	0	0		ENSG00000007171|ENST00000313735|NOS2;nc|ENSG00000007171|P35228-2|NOS2	ENSG00000007171|ENST00000313735|NOS2	ENSG00000007171|ENST00000313735|NOS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.788330078125	2	540.775262	1079.53597	0.48035	0.00025976	1.4161	0.0007658	1.8965	0.0010256	541.2785210899452	21.616	0.30764	21.616	21.487	21.795	0					17	10	2	0	0	0	0.36786	1	2938	2938		9.3831	0	1	46914			4980	372	2463	2463	6949	6949					-0.0006151719326226157
DATTIAKI	8	Unmodified	_DATTIAKI_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.21893310546875	2	416.742368	831.470183	0.043749	1.8232E-05	-0.010285	-4.2863E-06	0.033464	1.3946E-05	416.74232940512934	37.997	0.81179	37.997	37.707	38.518	0					63	28	4	0	0	0	0.21873	1	7890	7890		58.679	12.658	1	1124700			4981	2029	2464	2464	6950	6950					0.04770693631849099
DATTIAKI	8	Unmodified	_DATTIAKI_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.2189025878906	2	416.742368	831.470183	0.1439	5.9969E-05	-0.087399	-3.6423E-05	0.0565	2.3546E-05	416.7423031285232	37.871	0.86271	37.969	37.654	38.517	0.097527					68	30	3	0	0	0	0.21873	1	7836	7836		58.679	12.658	1	1215100			4982	2029	2464	2464	6951	6951					0.04770693631849099
DATVIVEDRKF	11	Unmodified	_DATVIVEDRKF_					0	0	0		ZBTB33|p.V34A|1|0.3|ENSG00000177485|chrX:120253516-120253516|T/C|missense_variant	ZBTB33|p.V34A|1|0.3|ENSG00000177485|chrX:120253516-120253516|T/C|missense_variant	ZBTB33|p.V34A|1|0.3|ENSG00000177485|chrX:120253516-120253516|T/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8882141113281	3	431.566348	1291.67722	-0.56663	-0.00024454	0.25162	0.00010859	-0.31501	-0.00013595	431.5662208100304	34.455	0.33857	34.532	34.39	34.729	0.077381					16	11	2	0	0	0	0.33287	1	6763	6763		2.8433	1.5136	1	47547			4983	23413	2465	2465	6952	6952					0.043044363893841364
DAVGFSRVI	9	Unmodified	_DAVGFSRVI_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN;PARN|p.H275Lfs*5|1|0.19|ENSG00000140694|chr16:14599920-14599921|-/A|frameshift_variant	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.2660217285156	2	482.266542	962.51853	0.35124	0.00016939	-0.54773	-0.00026415	-0.19649	-9.476E-05	482.2662524635819	54.075	0.63182	54.139	53.852	54.483	0.063206					37	23	2	0	0	0	0.032589	1	12811	12811		59.368	26.583	1	559900			4984	4330	2466	2466	6953	6953					0.03577187271753246
DAVGFSRVI	9	Unmodified	_DAVGFSRVI_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN;PARN|p.H275Lfs*5|1|0.19|ENSG00000140694|chr16:14599920-14599921|-/A|frameshift_variant	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.2667541503906	2	482.266542	962.51853	0.44058	0.00021248	-0.097609	-4.7074E-05	0.34297	0.0001654	482.26646937189145	54.176	0.50199	54.16	53.949	54.451	-0.015923					31	17	2	0	0	0	0.073988	1	12881	12881		43.982	17.098	1	595020			4985	4330	2466	2466	6954	6954					0.03577187271753246
DAVGFSRVI	9	Unmodified	_DAVGFSRVI_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN;PARN|p.H275Lfs*5|1|0.19|ENSG00000140694|chr16:14599920-14599921|-/A|frameshift_variant	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	482.266542	962.51853	0.45562	0.00021973	-0.47711	-0.00023009	-0.02149	-1.0364E-05	482.26630448629936	54.153	0.57816	54.153	53.884	54.462	0	0.0026065	-0.00015061	NaN	59.368	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	494810			4986	4330	2466	2466							0.03577187271753246
DAVISTETV	9	Unmodified	_DAVISTETV_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000482902.5_1_X:153061851-153062064:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.739990234375	2	467.740022	933.465492	0.28082	0.00013135	-0.4518	-0.00021132	-0.17097	-7.9972E-05	467.7397312593499	48.074	0.56967	48.074	47.959	48.528	0					35	19	2	0	0	0	0.0013036	1	11024	11024		118.89	66.626	1	670900			4987	7210	2467	2467	6955	6955					-0.003902353015519111
DAVISTETV	9	Unmodified	_DAVISTETV_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000482902.5_1_X:153061851-153062064:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	467.740022	933.465492	0.46716	0.00021851	-0.40269	-0.00018835	0.064468	3.0154E-05	467.7398757093447	48.041	0.65545	48.088	47.893	48.549	0.047523	0.029279	1.9669E-05	NaN	118.89	33	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	855410			4988	7210	2467	2467							-0.003902353015519111
DAVISTETV	9	Unmodified	_DAVISTETV_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000482902.5_1_X:153061851-153062064:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	467.740022	933.465492	0.43592	0.0002039	-0.40173	-0.00018791	0.034192	1.5993E-05	467.7397548121421	47.971	0.63311	48.014	47.85	48.483	0.04332	-0.04469	2.0565E-05	NaN	118.89	36	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	584990			4989	7210	2467	2467							-0.003902353015519111
DAVKFFVAV	9	Unmodified	_DAVKFFVAV_					0	0	0		nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9	nc|ENSG00000008294|O60271-4|SPAG9	nc|ENSG00000008294|O60271-4|SPAG9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.28179931640625	2	498.28166	994.548768	0.43354	0.00021602	-0.26529	-0.00013219	0.16825	8.3834E-05	498.28142484307193	68.515	1.2776	68.515	68.178	69.455	0					137	46	4	0	0	0	0.014206	4	17287	17240;17287;17332;17386		72.968	72.968	1	5945400			4990	392	2468	2468	6956;6957;6958;6959	6957					0.05127545936943534
DAVKFFVAV	9	Unmodified	_DAVKFFVAV_					0	0	0		nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9	nc|ENSG00000008294|O60271-4|SPAG9	nc|ENSG00000008294|O60271-4|SPAG9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2816467285156	2	498.28166	994.548768	0.33129	0.00016508	-0.26612	-0.0001326	0.065172	3.2474E-05	498.2814148475917	68.502	1.7827	68.574	68.163	69.945	0.071938					166	64	5	0	0	0	0.014206	4	17249	17202;17249;17294;17343		72.968	72.968	1	6427300			4991	392	2468	2468	6960;6961;6962;6963	6961					0.05127545936943534
DAVKFFVAV	9	Unmodified	_DAVKFFVAV_					0	0	0		nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9	nc|ENSG00000008294|O60271-4|SPAG9	nc|ENSG00000008294|O60271-4|SPAG9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.28173828125	2	498.28166	994.548768	0.40717	0.00020288	-0.2884	-0.00014371	0.11876	5.9177E-05	498.281394364843	68.578	1.7193	68.559	68.197	69.916	-0.01915					147	61	5	0	0	0	0.014206	4	17274	17229;17274;17325;17376		72.968	42.743	1	6210100			4992	392	2468	2468	6964;6965;6966;6967	6965					0.05127545936943534
DAVKFFVSV	9	Unmodified	_DAVKFFVSV_					0	0	0		ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENST00000563868.1_1_16:1818048-1818822:+|nuORF	ENSG00000138834|ENST00000610761|MAPK8IP3	ENSG00000138834|ENST00000610761|MAPK8IP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.31365966796875	2	506.279118	1010.54368	0.32265	0.00016335	0.13937	7.0561E-05	0.46202	0.00023391	506.279024094713	67.865	0.68988	67.865	67.536	68.226	0					36	24	3	0	0	0	0.19208	1	17059	17059		33.445	23.371	1	257380			4993	4202	2469	2469	6968	6968					0.03883242074334703
DAVKILKL	8	Unmodified	_DAVKILKL_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;ENST00000477049.1_1_9:135139628-135141576:-|nuORF	nc|ENSG00000107290|Q7Z333-3|SETX;ENST00000477049.1_1_9:135139628-135141576:-|nuORF	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2998962402344	2	450.299853	898.585153	0.32939	0.00014832	-0.044384	-1.9986E-05	0.28501	0.00012834	450.29970621701113	45.308	0.70465	45.308	45.015	45.72	0					67	25	4	0	0	0	0.024395	2	10099	10099;10151		96.111	21.182	1	1396000			4994	2120;10952	2470	2470	6969;6970	6969					0.13180422833659122
DAVKILKL	8	Unmodified	_DAVKILKL_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;ENST00000477049.1_1_9:135139628-135141576:-|nuORF	nc|ENSG00000107290|Q7Z333-3|SETX;ENST00000477049.1_1_9:135139628-135141576:-|nuORF	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2997741699219	2	450.299853	898.585153	0.37034	0.00016676	-0.15374	-6.9231E-05	0.21659	9.7532E-05	450.29969029505446	45.156	0.70626	45.225	44.979	45.685	0.068569					65	24	3	0	0	0	0.026963	3	10046	10046;10096;10147		92.653	19.685	1	1486100			4995	2120;10952	2470	2470	6971;6972;6973	6971					0.13180422833659122
DAVKILKL	8	Unmodified	_DAVKILKL_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;ENST00000477049.1_1_9:135139628-135141576:-|nuORF	nc|ENSG00000107290|Q7Z333-3|SETX;ENST00000477049.1_1_9:135139628-135141576:-|nuORF	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2998352050781	2	450.299853	898.585153	0.32258	0.00014526	-0.13908	-6.2627E-05	0.1835	8.2629E-05	450.2996730712721	45.172	0.85969	45.247	44.962	45.821	0.075047					66	31	4	0	0	0	0.019016	2	10046	10046;10089		103.35	21.463	1	1415300			4996	2120;10952	2470	2470	6974;6975	6974					0.13180422833659122
DAVNLALLM	9	Oxidation (M)	_DAVNLALLM(Oxidation (M))_		DAVNLALLM(1)		DAVNLALLM(73)	0	0	1		ENSG00000155561|ENST00000285968|NUP205;NUP205|p.H1034Tfs*4|1|0.19|ENSG00000155561|chr7:135607274-135607274|T/-|frameshift_variant	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.23236083984375	2	488.26261	974.510668	0.17822	8.7019E-05	0.025144	1.2277E-05	0.20337	9.9296E-05	488.2626955607726	73.348	0.55563	73.348	73.105	73.661	0					36	19	2	0	0	0	0.0051609	1	18743	18743		72.968	25.219	1	382330			4997	5182	2471	2471	6976	6976		631			0.022392919599724337
DAVNLALLM	9	Oxidation (M)	_DAVNLALLM(Oxidation (M))_		DAVNLALLM(1)		DAVNLALLM(100)	0	0	1		ENSG00000155561|ENST00000285968|NUP205;NUP205|p.H1034Tfs*4|1|0.19|ENSG00000155561|chr7:135607274-135607274|T/-|frameshift_variant	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2323303222656	2	488.26261	974.510668	0.16401	8.008E-05	-0.37379	-0.00018251	-0.20978	-0.00010243	488.26254091803554	73.32	0.57635	73.374	73.118	73.694	0.053833					33	20	2	0	0	0	0.0057766	1	18727	18727		99.799	47.531	1	343120			4998	5182	2471	2471	6977	6977		631			0.022392919599724337
DAVPRIVIL	9	Unmodified	_DAVPRIVIL_					0	0	0		ENST00000476719.1_1_9:135601077-135753754:-|nuORF	ENST00000476719.1_1_9:135601077-135753754:-|nuORF	ENST00000476719.1_1_9:135601077-135753754:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.316162109375	2	498.316035	994.617516	0.43071	0.00021463	-0.0095385	-4.7532E-06	0.42117	0.00020988	498.316017208985	68.957	0.66389	68.957	68.675	69.339	0					39	23	2	0	0	0	0.24467	1	17416	17416		17.113	1.2657	1	297080			4999	10948	2472	2472	6978	6978					0.11999210236660929
DAVQFANRV	9	Unmodified	_DAVQFANRV_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4;ENST00000518628.1_1_8:41476250-41476497:+|nuORF;ENST00000509044.1_1_4:84519769-84525917:+|nuORF;ENSG00000138678|ENST00000264409|GPAT3	ENSG00000158669|ENST00000396987|GPAT4;ENSG00000138678|ENST00000264409|GPAT3	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2671203613281	2	510.267073	1018.51959	0.19678	0.00010041	-0.11057	-5.6421E-05	0.08621	4.399E-05	510.26693855206344	41.497	0.44408	41.497	41.152	41.596	0					27	16	2	0	0	0	0.00019464	1	8904	8904		133.05	85.304	1	1279200			5000	5367;4178	2473	2473	6979	6979					0.011074016406610099
DAVQFANRV	9	Unmodified	_DAVQFANRV_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4;ENST00000518628.1_1_8:41476250-41476497:+|nuORF;ENST00000509044.1_1_4:84519769-84525917:+|nuORF;ENSG00000138678|ENST00000264409|GPAT3	ENSG00000158669|ENST00000396987|GPAT4;ENSG00000138678|ENST00000264409|GPAT3	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.26702880859375	2	510.267073	1018.51959	0.19111	9.7518E-05	-0.046062	-2.3504E-05	0.14505	7.4014E-05	510.26701939396037	41.212	0.50856	41.302	41.002	41.511	0.090248					46	18	3	0	0	0	0.001957	2	8836	8836;8887		110.55	62.804	1	1220100			5001	5367;4178	2473	2473	6980;6981	6980					0.011074016406610099
DAVQFANRV	9	Unmodified	_DAVQFANRV_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4;ENST00000518628.1_1_8:41476250-41476497:+|nuORF;ENST00000509044.1_1_4:84519769-84525917:+|nuORF;ENSG00000138678|ENST00000264409|GPAT3	ENSG00000158669|ENST00000396987|GPAT4;ENSG00000138678|ENST00000264409|GPAT3	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2671813964844	2	510.267073	1018.51959	0.13817	7.0504E-05	0.0027044	1.38E-06	0.14087	7.1884E-05	510.2669930585351	41.166	0.54518	41.263	40.96	41.505	0.096622					52	19	3	0	0	0	0.0028542	2	8837	8795;8837		103.42	69.018	1	1242800			5002	5367;4178	2473	2473	6982;6983	6983					0.011074016406610099
DAVQLNVI	8	Unmodified	_DAVQLNVI_					0	0	0		ENSG00000197601|ENST00000354817|FAR1;ENST00000524933.1_1_11:13716477-13732426:+|nuORF	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.24713134765625	2	436.247818	870.481082	-0.28886	-0.00012601	-0.10123	-4.416E-05	-0.39008	-0.00017017	436.2478167428458	65.085	1.7776	65.085	64.563	66.341	0					159	64	4	0	0	0	6.4735E-10	5	16164	16164;16212;16263;16314;16369		196.65	91.849	1	9547500			5003	7982	2474	2474	6984;6985;6986;6987;6988	6984					0.04066096006135922
DAVQLNVI	8	Unmodified	_DAVQLNVI_					0	0	0		ENSG00000197601|ENST00000354817|FAR1;ENST00000524933.1_1_11:13716477-13732426:+|nuORF	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.2477111816406	2	436.247818	870.481082	-0.19764	-8.6218E-05	-0.16457	-7.1791E-05	-0.3622	-0.00015801	436.2477625514363	65.019	1.5952	65.108	64.629	66.224	0.088882					169	58	5	0	0	0	6.4735E-10	5	16177	16127;16177;16226;16280;16314		196.65	88.651	1	8795300			5004	7982	2474	2474	6989;6990;6991;6992;6993	6990					0.04066096006135922
DAVQLNVI	8	Unmodified	_DAVQLNVI_					0	0	0		ENSG00000197601|ENST00000354817|FAR1;ENST00000524933.1_1_11:13716477-13732426:+|nuORF	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.24774169921875	2	436.247818	870.481082	-0.30036	-0.00013103	-0.025739	-1.1229E-05	-0.3261	-0.00014226	436.2478029060494	65.118	1.5319	65.106	64.721	66.253	-0.011337					136	55	4	0	0	0	6.4735E-10	6	16201	16159;16201;16248;16297;16346;16358		196.65	88.651	1	8908900			5005	7982	2474	2474	6994;6995;6996;6997;6998;6999	6995					0.04066096006135922
DAVRIPTV	8	Unmodified	_DAVRIPTV_					0	0	0		ENSG00000162522|ENST00000401073|KIAA1522;nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3	ENSG00000162522|ENST00000401073|KIAA1522	ENSG00000162522|ENST00000401073|KIAA1522	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.75567626953125	2	435.75581	869.497067	0.079686	3.4724E-05	-0.15213	-6.6293E-05	-0.072447	-3.1569E-05	435.7556514202034	49.25	0.93089	49.25	48.798	49.729	0					77	33	3	0	0	0	0.011813	1	11339	11339		114.2	35.474	1	932040			5006	5578	2475	2475	7000	7000					0.0570980224304094
DAVRIPTV	8	Unmodified	_DAVRIPTV_					0	0	0		ENSG00000162522|ENST00000401073|KIAA1522;nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3	ENSG00000162522|ENST00000401073|KIAA1522	ENSG00000162522|ENST00000401073|KIAA1522	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.75567626953125	2	435.75581	869.497067	-0.0117	-5.0983E-06	-0.12491	-5.4431E-05	-0.13661	-5.9529E-05	435.75568370162864	49.317	1.0288	49.362	48.796	49.825	0.044891					79	37	3	0	0	0	0.021688	3	11384	11266;11317;11384		99.755	30.65	1	885230			5007	5578	2475	2475	7001;7002;7003	7003					0.0570980224304094
DAVRIPTV	8	Unmodified	_DAVRIPTV_					0	0	0		ENSG00000162522|ENST00000401073|KIAA1522;nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3	ENSG00000162522|ENST00000401073|KIAA1522	ENSG00000162522|ENST00000401073|KIAA1522	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.7557373046875	2	435.75581	869.497067	-0.17128	-7.4635E-05	0.13896	6.0551E-05	-0.032321	-1.4084E-05	435.75577975749087	49.212	1.0773	49.244	48.71	49.787	0.032043					81	38	3	0	0	0	0.021688	2	11291	11291;11355		99.755	30.65	1	849880			5008	5578	2475	2475	7004;7005	7004					0.0570980224304094
DAVRKVLR	8	Unmodified	_DAVRKVLR_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.3311462402344	2	478.803626	955.592698	0.62423	0.00029888	3.0626	0.0014664	3.6869	0.0017653	478.8050422518881	54.927	0.37483	54.911	54.605	54.98	-0.015919					17	13	2	0	0	0	0.34247	1	13053	13053		0.52476	0	1	199670			5009	2724	2476	2476	7006	7006					0.11312575153942817
DAVRLINI	8	Unmodified	_DAVRLINI_					0	0	0		ENSG00000113593|ENST00000261308|PPWD1;ENST00000511334.1_1_5:64872783-64879053:+|nuORF;nc|ENSG00000113593|Q96BP3-2|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.27703857421875	2	457.276909	912.539266	0.21989	0.00010055	-0.02313	-1.0577E-05	0.19676	8.9972E-05	457.2769264843983	58.507	0.67554	58.507	58.216	58.891	0					40	22	2	0	0	0	0.04227	1	14175	14175		81.89	0	1	895720			5010	2515	2477	2477	7007	7007					0.07949777651424483
DAVRLINI	8	Unmodified	_DAVRLINI_					0	0	0		ENSG00000113593|ENST00000261308|PPWD1;ENST00000511334.1_1_5:64872783-64879053:+|nuORF;nc|ENSG00000113593|Q96BP3-2|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2769470214844	2	457.276909	912.539266	0.18119	8.2854E-05	-0.11478	-5.2484E-05	0.066414	3.037E-05	457.27693919171156	58.364	0.81831	58.454	58.029	58.848	0.090103					58	28	3	0	0	0	0.057403	1	14124	14124		81.89	0	1	831510			5011	2515	2477	2477	7008	7008					0.07949777651424483
DAVRLINI	8	Unmodified	_DAVRLINI_					0	0	0		ENSG00000113593|ENST00000261308|PPWD1;ENST00000511334.1_1_5:64872783-64879053:+|nuORF;nc|ENSG00000113593|Q96BP3-2|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2770080566406	2	457.276909	912.539266	0.53191	0.00024323	-0.38308	-0.00017517	0.14883	6.8057E-05	457.27680881425965	58.474	0.86303	58.46	58.114	58.977	-0.014267					50	30	2	0	0	0	0.23527	1	14212	14212		56.177	0	1	1099900			5012	2515	2477	2477	7009	7009					0.07949777651424483
DAVRTKMV	8	Oxidation (M)	_DAVRTKM(Oxidation (M))V_		DAVRTKM(1)V		DAVRTKM(93)V	0	0	1		ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.2524719238281	2	468.252577	934.490601	-0.28275	-0.0001324	0.2546	0.00011922	-0.02815	-1.3181E-05	468.2525982221541	14.123	0.71886	14.123	13.872	14.591	0					69	24	4	0	0	0	0.026582	2	599	599;649		93.166	40.898	1	820630			5013	4844	2478	2478	7010;7011	7010		602			0.020735410200245497
DAVRTKMV	8	Oxidation (M)	_DAVRTKM(Oxidation (M))V_		DAVRTKM(1)V		DAVRTKM(100)V	0	0	1		ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.25238037109375	2	468.252577	934.490601	-0.25343	-0.00011867	0.33351	0.00015617	0.080076	3.7496E-05	468.2526338429121	14.185	0.7473	14.08	13.845	14.592	-0.10466					63	25	3	0	0	0	0.018967	2	622	622;663		103.42	51.151	1	915960			5014	4844	2478	2478	7012;7013	7012		602			0.020735410200245497
DAVRTKMV	8	Oxidation (M)	_DAVRTKM(Oxidation (M))V_		DAVRTKM(1)V		DAVRTKM(93)V	0	0	1		ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.25250244140625	2	468.252577	934.490601	-0.13412	-6.2801E-05	0.1673	7.8341E-05	0.033186	1.5539E-05	468.25252359781615	14.109	0.72721	14.043	13.889	14.616	-0.066068					65	25	3	0	0	0	0.026582	2	656	612;656		93.166	25.085	1	801690			5015	4844	2478	2478	7014;7015	7015		602			0.020735410200245497
DAVRVLREI	9	Unmodified	_DAVRVLREI_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1;ENST00000478639.1_1_3:183883993-183884404:+|nuORF;ENST00000478247.1_1_3:183882805-183888540:+|nuORF;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.8198852539062	2	535.819473	1069.62439	0.63353	0.00033946	1.0997	0.00058924	1.7332	0.0009287	535.8198926860014	45.283	0.95255	45.283	44.935	45.888	0					82	34	4	0	0	0	0.018042	2	10098	10098;10204		67.081	28.466	1	1645400			5016	2124	2479	2479	7016;7017	7016					0.09236523117237994
DAVRVLREI	9	Unmodified	_DAVRVLREI_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1;ENST00000478639.1_1_3:183883993-183884404:+|nuORF;ENST00000478247.1_1_3:183882805-183888540:+|nuORF;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8199462890625	2	535.819473	1069.62439	0.48726	0.00026109	1.2932	0.00069294	1.7805	0.00095403	535.8200704471295	45.049	1.1161	45.118	44.627	45.743	0.068569					90	39	4	0	0	0	0.018042	2	10025	10025;10073		67.081	32.149	1	1833200			5017	2124	2479	2479	7018;7019	7018					0.09236523117237994
DAVRVLREI	9	Unmodified	_DAVRVLREI_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1;ENST00000478639.1_1_3:183883993-183884404:+|nuORF;ENST00000478247.1_1_3:183882805-183888540:+|nuORF;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8197631835938	2	535.819473	1069.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.002	1	45.077	44.577	45.577	0.075047								0	0	0	0.029413	1	10012	10012		67.081	29.107	1				5018	2124	2479	2479	7020	7020					0.09236523117237994
DAVRVLREI	9	Unmodified	_DAVRVLREI_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1;ENST00000478639.1_1_3:183883993-183884404:+|nuORF;ENST00000478247.1_1_3:183882805-183888540:+|nuORF;nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8199462890625	2	535.819473	1069.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.151	1	45.226	44.726	45.726	0.075047								0	0	0	0.029413	1	10058	10058		67.081	25.125	1				5019	2124	2479	2479	7021	7021					0.09236523117237994
DAVSKVLQI	9	Unmodified	_DAVSKVLQI_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7899475097656	2	486.78985	971.565146	0.38444	0.00018714	-0.14008	-6.8191E-05	0.24436	0.00011895	486.7897390990109	57.01	1.0768	57.01	56.528	57.605	0					130	39	6	0	0	0	2.5511E-05	3	13742	13696;13742;13789		152.89	33.728	1	9302700			5020	8441	2480	2480	7022;7023;7024	7023					0.07822627103041668
DAVSKVLQI	9	Unmodified	_DAVSKVLQI_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7900695800781	2	486.78985	971.565146	0.29478	0.0001435	-0.061445	-2.9911E-05	0.23334	0.00011359	486.7897773583852	56.925	1.3195	57.004	56.462	57.781	0.078674					130	48	6	0	0	0	3.6949E-07	3	13707	13660;13707;13751		165.72	35.948	1	9298000			5021	8441	2480	2480	7025;7026;7027	7026					0.07822627103041668
DAVSKVLQI	9	Unmodified	_DAVSKVLQI_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7900390625	2	486.78985	971.565146	0.37828	0.00018414	-0.35571	-0.00017316	0.022568	1.0986E-05	486.78973713487454	57.071	1.0364	57.052	56.729	57.765	-0.019077					107	37	6	0	0	0	7.3453E-05	3	13751	13703;13751;13805		145.13	35.202	1	10325000			5022	8441	2480	2480	7028;7029;7030	7029					0.07822627103041668
DAVSVKIVI	9	Unmodified	_DAVSVKIVI_					0	0	0			REV__ENSG00000172071|ENST00000303236|EIF2AK3	REV__ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2748718261719	2	472.294768	942.574983	0.38869	0.00018358	-0.45693	-0.00021581	-0.06824	-3.2229E-05	472.2935994361268	79.441	0.16763	79.412	79.327	79.495	-0.028931					10	6	2	0	0	0	0.24289	1	20586	20586		18.146	3.3081	1	97915	+		5023	17691	2481	2481	7031	7031					0.10139815108414041
DAVTAFESI	9	Unmodified	_DAVTAFESI_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7344055175781	2	476.73474	951.454927	0.24734	0.00011792	-0.56718	-0.00027039	-0.31984	-0.00015248	476.73437179445654	71.105	0.58883	71.165	70.928	71.517	0.060776					33	20	2	0	0	0	0.023967	1	18107	18107		62.573	30.267	1	480670			5024	5064;484;7523	2482	2482	7032	7032					-0.022742179560054865
DAVTAFESI	9	Unmodified	_DAVTAFESI_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.73406982421875	2	476.73474	951.454927	0.34396	0.00016398	-0.93374	-0.00044515	-0.58978	-0.00028117	476.7341734684044	71.241	0.59644	71.216	70.912	71.509	-0.024864					35	21	2	0	0	0	0.016723	1	18128	18128		69.105	34.703	1	465330			5025	5064;484;7523	2482	2482	7033	7033					-0.022742179560054865
DAVTAFESI	9	Unmodified	_DAVTAFESI_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	476.73474	951.454927	0.18478	8.809E-05	-0.67683	-0.00032267	-0.49205	-0.00023458	476.73426978451545	71.17	0.46791	71.17	70.963	71.431	0	-0.013818	2.2853E-05	NaN	69.105	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	712470			5026	5064;484;7523	2482	2482							-0.022742179560054865
DAVTFITYV	9	Unmodified	_DAVTFITYV_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2555541992188	2	514.768583	1027.52261	0.41899	0.00021568	-0.39406	-0.00020285	0.024935	1.2836E-05	514.7682919901358	82.311	0.97704	82.311	82.024	83.001	0					78	35	3	0	0	0	0.0057766	1	21496	21496		99.799	67.493	1	1368900			5027	276	2483	2483	7034	7034					0.009952319747981164
DAVTFITYV	9	Unmodified	_DAVTFITYV_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2554931640625	2	514.768583	1027.52261	0.20997	0.00010808	-0.14755	-7.5953E-05	0.06242	3.2132E-05	514.7684238398158	82.242	0.85494	82.311	82.069	82.924	0.068993					74	34	3	0	0	0	0.023103	1	21499	21499		71.922	45.039	1	1202600			5028	276	2483	2483	7035	7035					0.009952319747981164
DAVTFITYV	9	Unmodified	_DAVTFITYV_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.255615234375	2	514.768583	1027.52261	0.2928	0.00015073	-0.28269	-0.00014552	0.010118	5.2085E-06	514.7683388925948	82.332	0.75652	82.312	82.061	82.818	-0.020584					72	29	3	0	0	0	0.023103	1	21496	21496		71.922	51.469	1	1225700			5029	276	2483	2483	7036	7036					0.009952319747981164
DAWAQLNSI	9	Unmodified	_DAWAQLNSI_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2533874511719	2	509.253631	1016.49271	0.36347	0.0001851	-0.76945	-0.00039185	-0.40598	-0.00020675	509.25293557388744	72.64	0.55377	72.694	72.484	73.037	0.053833					38	19	3	0	0	0	0.00010651	1	18525	18525		139.78	83.605	1	246030			5030	5388	2484	2484	7037	7037					-0.014877069705221402
DAWAQLNSI	9	Unmodified	_DAWAQLNSI_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	509.253631	1016.49271	0.40708	0.00020731	-0.10831	-5.5158E-05	0.29877	0.00015215	509.25275333087853	72.771	0.4641	72.742	72.516	72.98	-0.029305	0.02379	0.0003844	NaN	139.78	36	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170490			5031	5388	2484	2484							-0.014877069705221402
DAWEVPAL	8	Unmodified	_DAWEVPAL_					0	0	0			REV__chr1:46936791-46937261|152|13.4|0.41|5.02|-|1|CYP4A11,None|1	REV__chr1:46936791-46937261|152|13.4|0.41|5.02|-|1|CYP4A11,None|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7791442871094	2	450.726718	899.438883	0.43545	0.00019627	-0.24322	-0.00010962	0.19224	8.6646E-05	450.7264702452632	64.108	0.67171	64.098	63.851	64.523	-0.0095367					35	24	2	0	0	0	0.25627	1	15928	15928		38.151	11.268	1	226680	+		5032	13160	2485	2485	7038	7038					-0.01485879402230239
DAWKLPKI	8	Unmodified	_DAWKLPKI_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7897033691406	2	485.789653	969.564752	0.29742	0.00014448	0.17399	8.4522E-05	0.47141	0.000229	485.7897097656804	55.481	1.5874	55.481	54.405	55.992	0					139	57	3	0	0	0	0.026963	5	13205	12980;13046;13072;13093;13205		92.653	52.696	1	2976000			5033	5933	2486	2486	7039;7040;7041;7042;7043	7043					0.07875252173846548
DAWKLPKI	8	Unmodified	_DAWKLPKI_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002014160156	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.212	1	80.212	79.712	80.712	0								0	0	0	0.29891	1	20836	20836		29.082	13.234	1				5034	5933	2486	2486	7044	7044					0.07875252173846548
DAWKLPKI	8	Unmodified	_DAWKLPKI_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7903137207031	2	485.789653	969.564752	0.48146	0.00023389	-0.0021228	-1.0312E-06	0.47934	0.00023286	485.7895951268298	55.417	1.4918	55.488	54.467	55.958	0.070885					145	55	4	0	0	0	0.026963	5	13233	12968;13032;13067;13181;13233		92.653	44.307	1	2921700			5035	5933	2486	2486	7045;7046;7047;7048;7049	7049					0.07875252173846548
DAWKLPKI	8	Unmodified	_DAWKLPKI_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002624511719	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.269	1	80.334	79.834	80.834	0.065094								0	0	0	0.3293	1	20843	20843		24.021	8.1734	1				5036	5933	2486	2486	7050	7050					0.07875252173846548
DAWKLPKI	8	Unmodified	_DAWKLPKI_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001403808594	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.426	1	80.491	79.991	80.991	0.065094								0	0	0	0.29891	1	20892	20892		29.082	13.234	1				5037	5933	2486	2486	7051	7051					0.07875252173846548
DAWKLPKI	8	Unmodified	_DAWKLPKI_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2454833984375	2	485.789653	969.564752	0.62808	0.00030511	-3.0639	-0.0014884	-2.4358	-0.0011833	485.7896625324251	60.545	0.44654	60.642	60.503	60.949	0.096985					29	15	3	0	0	0	0.30241	1	14846	14846		25.399	0	1	186200			5038	5933	2486	2486	7052	7052					0.07875252173846548
DAWKLPKI	8	Unmodified	_DAWKLPKI_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7896728515625	2	485.789653	969.564752	0.43728	0.00021243	-0.076736	-3.7278E-05	0.36055	0.00017515	485.78956456902154	55.6	1.5866	55.581	54.546	56.133	-0.019081					92	58	2	0	0	0	0.040925	3	13238	13077;13110;13238		82.529	42.572	1	2767200			5039	5933	2486	2486	7053;7054;7055	7055					0.07875252173846548
DAWKLPKI	8	Unmodified	_DAWKLPKI_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80035400390625	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.505	1	60.495	59.995	60.995	-0.0097504								0	0	0	0.34957	1	14795	14795		14.838	3.198	1				5040	5933	2486	2486	7056	7056					0.07875252173846548
DAWKLPKI	8	Unmodified	_DAWKLPKI_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002014160156	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.85	1	60.841	60.341	61.341	-0.0094566								0	0	0	0.31724	1	14901	14901		26.268	9.3258	1				5041	5933	2486	2486	7057	7057					0.07875252173846548
DAWKLPKI	8	Unmodified	_DAWKLPKI_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7999572753906	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.114	1	80.088	79.588	80.588	-0.026825								0	0	0	0.29891	1	20791	20791		29.082	7.5446	1				5042	5933	2486	2486	7058	7058					0.07875252173846548
DAWKLPKI	8	Unmodified	_DAWKLPKI_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.291	1	80.264	79.764	80.764	-0.026825								0	0	0	0.25302	1	20845	20845		36.127	9.2434	1				5043	5933	2486	2486	7059	7059					0.07875252173846548
DAWKLPKI	8	Unmodified	_DAWKLPKI_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7999267578125	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.471	1	80.444	79.944	80.944	-0.026825								0	0	0	0.31323	1	20898	20898		26.884	0	1				5044	5933	2486	2486	7060	7060					0.07875252173846548
DAWKLPKI	8	Unmodified	_DAWKLPKI_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7999572753906	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.629	1	80.602	80.102	81.102	-0.026825								0	0	0	0.31323	1	20947	20947		26.884	0	1				5045	5933	2486	2486	7061	7061					0.07875252173846548
DAWKQLQTF	9	Unmodified	_DAWKQLQTF_					0	0	0		nc|ENSG00000119673|P49753-2|ACOT2;ENSG00000184227|ENST00000311148|ACOT1;ENSG00000119673|ENST00000238651|ACOT2	nc|ENSG00000119673|P49753-2|ACOT2	nc|ENSG00000119673|P49753-2|ACOT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.3187255859375	2	568.790381	1135.56621	0.35451	0.00020164	0.98171	0.00055838	1.3362	0.00076003	569.2918097876343	60.483	0.45815	60.483	60.255	60.713	0					23	16	2	0	0	0	0.152	1	14814	14814		43.982	18.991	1	450020			5046	2893	2487	2487	7062	7062					0.003848414719413995
DAWLRAQVI	9	Unmodified	_DAWLRAQVI_					0	0	0		ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7	ENSG00000196116|ENST00000355295|TDRD7	ENSG00000196116|ENST00000355295|TDRD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7396850585938	2	536.300916	1070.58728	0.44699	0.00023972	-0.52131	-0.00027958	-0.074322	-3.9859E-05	536.300345301251	61.994	0.37482	61.994	61.891	62.266	0					22	13	2	0	0	0	0.2422	1	15307	15307		19.362	4.7802	1	167740			5047	7822	2488	2488	7063	7063					0.054808515714512396
DAWLRAQVI	9	Unmodified	_DAWLRAQVI_					0	0	0		ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7	ENSG00000196116|ENST00000355295|TDRD7	ENSG00000196116|ENST00000355295|TDRD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7396240234375	2	536.300916	1070.58728	0.32724	0.0001755	-0.031327	-1.6801E-05	0.29591	0.0001587	536.3006886130458	62.019	0.2881	62.011	61.878	62.167	-0.0085526					16	10	2	0	0	0	0.24636	1	15299	15299		16.149	1.7437	1	143750			5048	7822	2488	2488	7064	7064					0.054808515714512396
DAYALNHTL	9	Unmodified	_DAYALNHTL_					0	0	0		ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2540283203125	2	509.253631	1016.49271	0.52176	0.00026571	-0.34604	-0.00017622	0.17572	8.9485E-05	509.25344717808963	44.917	0.73595	44.917	44.605	45.341	0					72	26	4	0	0	0	1.6536E-07	2	9973	9973;10018		173.69	81.033	1	2233800			5049	2329	2489	2489	7065;7066	7065					-0.014877069705221402
DAYALNHTL	9	Unmodified	_DAYALNHTL_					0	0	0		ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.25360107421875	2	509.253631	1016.49271	0.40102	0.00020422	-0.2884	-0.00014687	0.11262	5.735E-05	509.2534944115632	44.699	0.83129	44.767	44.488	45.319	0.068569					69	29	3	0	0	0	4.8913E-11	2	9909	9909;9955		187.3	72.647	1	2363200			5050	2329	2489	2489	7067;7068	7067					-0.014877069705221402
DAYALNHTL	9	Unmodified	_DAYALNHTL_					0	0	0		ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	ENSG00000110777|ENST00000393067|POU2AF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.253662109375	2	509.253631	1016.49271	0.44682	0.00022754	-0.18469	-9.4053E-05	0.26213	0.00013349	509.253525631194	44.688	0.78435	44.763	44.449	45.234	0.07505					80	28	4	0	0	0	1.6536E-07	2	9939	9893;9939		173.69	70.333	1	2338500			5051	2329	2489	2489	7069;7070	7070					-0.014877069705221402
DAYAVIQV	8	Unmodified	_DAYAVIQV_					0	0	0		nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;ENST00000522727.5_1_8:37735063-37756959:-|nuORF;nc|ENSG00000156675|Q6WKZ4-5|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.7342224121094	2	439.734543	877.454533	0.34599	0.00015215	-1.3798	-0.00060674	-1.0338	-0.00045459	439.73394448548805	64.238	0.73195	64.238	63.915	64.647	0					55	26	3	0	0	0	0.25582	1	15967	15967		41.84	14.956	1	443580			5052	5248	2490	2490	7071	7071					0.010904071148161165
DAYAVIQV	8	Unmodified	_DAYAVIQV_					0	0	0		nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;ENST00000522727.5_1_8:37735063-37756959:-|nuORF;nc|ENSG00000156675|Q6WKZ4-5|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.7339782714844	2	439.734543	877.454533	0.33715	0.00014826	-1.3954	-0.00061359	-1.0582	-0.00046534	439.73396684109275	64.235	0.69785	64.225	63.91	64.608	-0.0095291					45	25	2	0	0	0	0.21873	1	15944	15944		58.679	26.373	1	461780			5053	5248	2490	2490	7072	7072					0.010904071148161165
DAYAVIQV	8	Unmodified	_DAYAVIQV_					0	0	0		nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;ENST00000522727.5_1_8:37735063-37756959:-|nuORF;nc|ENSG00000156675|Q6WKZ4-5|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	439.734543	877.454533	0.2592	0.00011398	-1.8412	-0.00080965	-1.582	-0.00069567	439.7343765144293	64.523	0.16361	64.616	64.554	64.718	0.09288	0.25634	-0.00039253	NaN	58.679	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65354			5054	5248	2490	2490							0.010904071148161165
DAYDGKDYI	9	Unmodified	_DAYDGKDYI_					0	0	0		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2351684570312	2	530.235104	1058.45566	0.34241	0.00018156	0.13994	7.4201E-05	0.48235	0.00025576	530.2350668371943	42.05	1.1052	42.05	41.825	42.93	0					96	39	4	0	0	0	8.0996E-05	3	9124	9072;9124;9176		143.91	62.019	1	6302800			5055	8321	2491	2491	7073;7074;7075	7074					-0.0712342330696174
DAYDGKDYI	9	Unmodified	_DAYDGKDYI_					0	0	0		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2349853515625	2	530.235104	1058.45566	0.41169	0.00021829	0.13736	7.2834E-05	0.54905	0.00029113	530.2349167071192	41.657	1.0078	41.748	41.511	42.519	0.090248					98	40	3	0	0	0	8.0996E-05	4	9018	8973;9018;9064;9118		143.91	62.019	1	8314600			5056	8321	2491	2491	7076;7077;7078;7079	7077					-0.0712342330696174
DAYDGKDYI	9	Unmodified	_DAYDGKDYI_					0	0	0		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2353515625	2	530.235104	1058.45566	0.79028	0.00041903	0.11021	5.8439E-05	0.90049	0.00047747	530.2349715040516	41.613	1.028	41.71	41.505	42.533	0.096622					93	39	3	0	0	0	8.0996E-05	4	8995	8950;8995;9045;9111		143.91	62.019	1	9125300			5057	8321	2491	2491	7080;7081;7082;7083	7081					-0.0712342330696174
DAYDLVKRKK	10	Unmodified	_DAYDLVKRKK_					0	0	0		ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	ENSG00000130829|ENST00000342782|DUSP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.8621826171875	2	618.358962	1234.70337	0.10699	6.6161E-05	0.27004	0.00016698	0.37704	0.00023314	618.8614937254433	94.022	1.2472	94.022	93.187	94.434	0					178	106	3	0	0	0	0.40992	1	25125	25125		1.6526	0.17072	1	150060			5058	3525	2492	2492	7084	7084					0.0954075035151618
DAYDNFDNI	9	Unmodified	_DAYDNFDNI_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7225952148438	2	543.722361	1085.43017	0.4952	0.00026925	0.11211	6.0956E-05	0.60731	0.00033021	543.7223622961257	63.173	1.0344	63.173	62.881	63.915	0					90	37	4	0	0	0	4.216E-07	2	15609	15609;15663		163.69	90.719	1	3483200			5059	4369;923	2493	2493	7085;7086	7085					-0.10912897829393842
DAYDNFDNI	9	Unmodified	_DAYDNFDNI_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7225952148438	2	543.722361	1085.43017	0.63778	0.00034677	-0.027979	-1.5213E-05	0.6098	0.00033156	543.7222885420567	63.023	1.0516	63.119	62.825	63.876	0.095722					94	37	4	0	0	0	4.1496E-11	2	15568	15568;15618		189.73	97.078	1	3182100			5060	4369;923	2493	2493	7087;7088	7087					-0.10912897829393842
DAYDNFDNI	9	Unmodified	_DAYDNFDNI_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.7225341796875	2	543.722361	1085.43017	0.61819	0.00033613	-0.055089	-2.9953E-05	0.5631	0.00030617	543.7222858070824	63.202	1.0511	63.194	62.86	63.911	-0.0085564					98	37	4	0	0	0	9.5135E-08	2	15609	15609;15658		176.43	83.774	1	3180500			5061	4369;923	2493	2493	7089;7090	7089					-0.10912897829393842
DAYEDFIV	8	Unmodified	_DAYEDFIV_					0	0	0		ENST00000565532.5_1_16:66762088-66770076:-|nuORF;nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2;ENST00000568453.1_1_16:66759799-66764068:-|nuORF	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2211608886719	2	486.221465	970.428378	0.31841	0.00015482	-0.91869	-0.00044669	-0.60027	-0.00029187	486.22104893448335	30.291	0.84585	30.319	29.933	30.778	0.027946					47	29	2	0	0	0	0.31375	1	5547	5547		19.439	5.9311	1	216330			5062	3898	2494	2494	7091	7091					-0.05801906847318605
DAYEFAVDV	9	Unmodified	_DAYEFAVDV_					0	0	0		ENST00000442459.2_1_1:16342077-16343748:-|nuORF;ENSG00000173641|ENST00000311890|HSPB7;nc|ENSG00000173641|Q9UBY9-2|HSPB7	ENST00000442459.2_1_1:16342077-16343748:-|nuORF	ENST00000442459.2_1_1:16342077-16343748:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7324829101562	2	514.732197	1027.44984	0.42564	0.00021909	0.15902	8.1855E-05	0.58467	0.00030095	514.7321845657232	72.68	0.87894	72.68	72.428	73.307	0					72	31	3	0	0	0	0.004681	2	18567	18524;18567		88.954	63.555	1	873760			5063	6737	2495	2495	7092;7093	7093					-0.06278521818626359
DAYEFAVDV	9	Unmodified	_DAYEFAVDV_					0	0	0		ENST00000442459.2_1_1:16342077-16343748:-|nuORF;ENSG00000173641|ENST00000311890|HSPB7;nc|ENSG00000173641|Q9UBY9-2|HSPB7	ENST00000442459.2_1_1:16342077-16343748:-|nuORF	ENST00000442459.2_1_1:16342077-16343748:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.732421875	2	514.732197	1027.44984	0.33698	0.00017345	0.10304	5.304E-05	0.44002	0.00022649	514.7322124830574	72.633	0.79172	72.687	72.408	73.2	0.053841					75	28	4	0	0	0	0.0037772	2	18501	18501;18548		96.111	69.227	1	888110			5064	6737	2495	2495	7094;7095	7094					-0.06278521818626359
DAYEFAVDV	9	Unmodified	_DAYEFAVDV_					0	0	0		ENST00000442459.2_1_1:16342077-16343748:-|nuORF;ENSG00000173641|ENST00000311890|HSPB7;nc|ENSG00000173641|Q9UBY9-2|HSPB7	ENST00000442459.2_1_1:16342077-16343748:-|nuORF	ENST00000442459.2_1_1:16342077-16343748:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7324829101562	2	514.732197	1027.44984	0.33953	0.00017477	0.044874	2.3098E-05	0.3844	0.00019786	514.7322212735143	72.702	0.94879	72.673	72.396	73.345	-0.029305					75	33	4	0	0	0	0.010453	2	18518	18518;18568		78.728	56.981	1	924820			5065	6737	2495	2495	7096;7097	7096					-0.06278521818626359
DAYEFFTSL	9	Unmodified	_DAYEFFTSL_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8410034179688	2	546.747847	1091.48114	0.46194	0.00025257	0.60956	0.00033327	1.0715	0.00058584	547.2503426661118	91.02	0.36993	91.02	90.727	91.097	0					41	29	2	0	0	0	0.15943	1	24163	24163		32.786	21.291	1	307090			5066	5566	2496	2496	7098	7098					-0.06093948784496206
DAYEFFTSL	9	Unmodified	_DAYEFFTSL_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8406982421875	2	546.747847	1091.48114	0.58836	0.00032168	-0.68132	-0.00037251	-0.092967	-5.083E-05	546.747452860505	90.829	0.23381	90.919	90.732	90.965	0.090668					23	17	2	0	0	0	0.20881	1	24077	24077		21.537	10.713	1	215540			5067	5566	2496	2496	7099	7099					-0.06093948784496206
DAYEFFTSL	9	Unmodified	_DAYEFFTSL_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8406982421875	2	546.747847	1091.48114	0.69623	0.00038066	-0.10442	-5.7094E-05	0.59181	0.00032357	546.7476479958231	90.957	0.24646	90.958	90.749	90.995	0.0003891					37	20	2	0	0	0	0.22674	1	24100	24100		17.113	6.289	1	271440			5068	5566	2496	2496	7100	7100					-0.06093948784496206
DAYEIRLL	8	Unmodified	_DAYEIRLL_					0	0	0		nc|ENSG00000131779|O96011-2|PEX11B;ENSG00000131779|ENST00000369306|PEX11B	nc|ENSG00000131779|O96011-2|PEX11B	nc|ENSG00000131779|O96011-2|PEX11B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.77410888671875	2	496.7742	991.533846	0.57975	0.000288	-0.19201	-9.5385E-05	0.38774	0.00019262	496.7739231188468	63.9	0.70878	63.9	63.607	64.316	0					54	25	3	0	0	0	0.048928	1	15829	15829		78.728	22.551	1	742050			5069	3590	2497	2497	7101	7101					0.037740540689469526
DAYEIRLL	8	Unmodified	_DAYEIRLL_					0	0	0		nc|ENSG00000131779|O96011-2|PEX11B;ENSG00000131779|ENST00000369306|PEX11B	nc|ENSG00000131779|O96011-2|PEX11B	nc|ENSG00000131779|O96011-2|PEX11B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.77435302734375	2	496.7742	991.533846	0.53497	0.00026576	-0.32082	-0.00015937	0.21415	0.00010638	496.7739035872729	63.75	0.72005	63.846	63.591	64.311	0.095722					58	25	3	0	0	0	0.069188	2	15795	15795;15847		69.105	21.356	1	572030			5070	3590	2497	2497	7102;7103	7102					0.037740540689469526
DAYEIRLL	8	Unmodified	_DAYEIRLL_					0	0	0		nc|ENSG00000131779|O96011-2|PEX11B;ENSG00000131779|ENST00000369306|PEX11B	nc|ENSG00000131779|O96011-2|PEX11B	nc|ENSG00000131779|O96011-2|PEX11B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7745056152344	2	496.7742	991.533846	0.56286	0.00027961	-0.18026	-8.9551E-05	0.38259	0.00019006	496.7739992823934	63.842	0.77373	63.832	63.591	64.364	-0.0095329					58	27	3	0	0	0	0.048928	1	15815	15815		78.728	22.551	1	643000			5071	3590	2497	2497	7104	7104					0.037740540689469526
DAYELKHAL	9	Unmodified	_DAYELKHAL_					0	0	0		ENST00000513428.5_1_4:122602814-122617744:-|nuORF;ENSG00000164111|ENST00000296511|ANXA5	ENST00000513428.5_1_4:122602814-122617744:-|nuORF	ENST00000513428.5_1_4:122602814-122617744:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2772827148438	2	530.277106	1058.53966	0.75103	0.00039825	-0.46368	-0.00024588	0.28735	0.00015238	530.2769594918358	36.939	0.86243	36.939	36.59	37.452	0					76	30	4	0	0	0	7.3453E-05	4	7549	7501;7549;7594;7599		145.13	70.201	1	3906000			5072	5791	2498	2498	7105;7106;7107;7108	7106					0.012731525806202626
DAYELKHAL	9	Unmodified	_DAYELKHAL_					0	0	0		ENST00000513428.5_1_4:122602814-122617744:-|nuORF;ENSG00000164111|ENST00000296511|ANXA5	ENST00000513428.5_1_4:122602814-122617744:-|nuORF	ENST00000513428.5_1_4:122602814-122617744:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2772827148438	2	530.277106	1058.53966	0.50082	0.00026557	-0.15686	-8.3181E-05	0.34396	0.00018239	530.2771098566526	36.762	1.0176	36.849	36.367	37.384	0.08741					83	36	4	0	0	0	7.3453E-05	4	7504	7457;7504;7548;7553		145.13	70.201	1	4058800			5073	5791	2498	2498	7109;7110;7111;7112	7110					0.012731525806202626
DAYELKHAL	9	Unmodified	_DAYELKHAL_					0	0	0		ENST00000513428.5_1_4:122602814-122617744:-|nuORF;ENSG00000164111|ENST00000296511|ANXA5	ENST00000513428.5_1_4:122602814-122617744:-|nuORF	ENST00000513428.5_1_4:122602814-122617744:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2771606445312	2	530.277106	1058.53966	0.84535	0.00044827	-0.49318	-0.00026152	0.35217	0.00018675	530.2769704272916	36.79	0.91138	36.883	36.536	37.448	0.093018					77	32	4	0	0	0	0.0010968	3	7459	7459;7506;7548		121.53	65.357	1	4093100			5074	5791	2498	2498	7113;7114;7115	7113					0.012731525806202626
DAYHNAELFF	10	Unmodified	_DAYHNAELFF_					0	0	0		ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1	ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.7776489257812	2	613.77747	1225.54039	0.22106	0.00013568	0.49839	0.0003059	0.71946	0.00044159	613.7775624456202	69.079	0.64175	69.079	68.786	69.428	0					59	22	3	0	0	0	0.30872	1	17452	17452		19.362	6.8304	1	1139600			5075	6510	2499	2499	7116	7116					-0.0633605277037077
DAYHNAELFF	10	Unmodified	_DAYHNAELFF_					0	0	0		ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1	ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	613.777587890625	2	613.77747	1225.54039	0.32263	0.00019802	0.55253	0.00033913	0.87516	0.00053715	613.7775272395228	68.991	0.7794	69.063	68.806	69.585	0.071938					74	27	4	0	0	0	0.3001	1	17445	17445		20.415	7.883	1	935640			5076	6510	2499	2499	7117	7117					-0.0633605277037077
DAYHNAELFF	10	Unmodified	_DAYHNAELFF_					0	0	0		ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1	ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	613.7777099609375	2	613.77747	1225.54039	0.20846	0.00012795	0.86215	0.00052917	1.0706	0.00065711	613.777744925257	69.048	0.80724	69.029	68.816	69.624	-0.019157					67	28	4	0	0	0	0.3001	1	17457	17457		20.415	7.883	1	1267400			5077	6510	2499	2499	7118	7118					-0.0633605277037077
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7584533691406	2	466.758018	931.501483	0.10857	5.0674E-05	-0.11168	-5.2128E-05	-0.003115	-1.4539E-06	466.7583510814651	79.414	3.9147	79.414	78.195	82.11	0					344	160	5	0	0	0	0.012639	7	20566	20521;20566;20613;20658;20908;20959;21011		112.59	19.771	1	24549000			5078	1927	2500	2500	7119;7120;7121;7122;7123;7124;7125	7120					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7579040527344	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.139	1	79.201	78.701	79.701	0.061417								0	0	0	0.016843	1	20497	20497		88.904	7.2905	1				5079	1927	2500	2500	7126	7126					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.758544921875	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.282	1	79.343	78.843	79.843	0.061417								0	0	0	2.8035E-05	1	20541	20541		120.45	20.079	1				5080	1927	2500	2500	7127	7127					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7586975097656	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.418	1	79.48	78.98	79.98	0.061417								0	0	0	0.0056334	1	20583	20583		100.37	15.015	1				5081	1927	2500	2500	7128	7128					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7582092285156	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.572	1	79.633	79.133	80.133	0.061417								0	0	0	0.016843	1	20630	20630		88.904	7.2905	1				5082	1927	2500	2500	7129	7129					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.75775146484375	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.311	1	80.376	79.876	80.876	0.065094								0	0	0	0.28879	1	20856	20856		30.637	3.7529	1				5083	1927	2500	2500	7130	7130					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.757568359375	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.595	1	80.66	80.16	81.16	0.065094								0	0	0	0.3229	1	20945	20945		25.399	3.6527	1				5084	1927	2500	2500	7131	7131					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7569580078125	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.726	1	80.792	80.292	81.292	0.065094								0	0	0	0.33717	1	20984	20984		20.454	2.3186	1				5085	1927	2500	2500	7132	7132					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.757568359375	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.779	1	80.844	80.344	81.344	0.065094								0	0	0	0.33981	1	21000	21000		19.257	3.4098	1				5086	1927	2500	2500	7133	7133					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7578430175781	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.206	1	79.177	78.677	79.677	-0.028931								0	0	0	0.035283	1	20512	20512		78.149	7.0158	1				5087	1927	2500	2500	7134	7134					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7583312988281	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.351	1	79.323	78.823	79.823	-0.028931								0	0	0	0.0016365	1	20557	20557		112.59	19.771	1				5088	1927	2500	2500	7135	7135					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7586364746094	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.511	1	79.482	78.982	79.982	-0.028931								0	0	0	0.0056334	1	20606	20606		100.37	18.758	1				5089	1927	2500	2500	7136	7136					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.75811767578125	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.661	1	79.632	79.132	80.132	-0.028931								0	0	0	0.016843	1	20652	20652		88.904	7.2905	1				5090	1927	2500	2500	7137	7137					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7579345703125	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.288	1	80.261	79.761	80.761	-0.026825								0	0	0	0.24099	1	20844	20844		37.974	3.8716	1				5091	1927	2500	2500	7138	7138					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7578125	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.517	1	80.49	79.99	80.99	-0.026825								0	0	0	0.24099	1	20912	20912		37.974	3.8716	1				5092	1927	2500	2500	7139	7139					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7580871582031	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.759	1	80.733	80.233	81.233	-0.026825								0	0	0	0.3229	1	20988	20988		25.399	3.6527	1				5093	1927	2500	2500	7140	7140					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7580261230469	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.799	1	80.772	80.272	81.272	-0.026825								0	0	0	0.28879	1	21000	21000		30.637	3.7529	1				5094	1927	2500	2500	7141	7141					0.03299266665965206
DAYIPLQI	8	Unmodified	_DAYIPLQI_					0	0	0		ENST00000602076.5_1_19:49949641-49950083:-|nuORF;ENST00000595633.5_1_19:49949641-49950433:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	ENST00000602076.5_1_19:49949641-49950083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.75750732421875	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.911	1	80.884	80.384	81.384	-0.026825								0	0	0	0.33981	1	21035	21035		19.257	1.122	1				5095	1927	2500	2500	7142	7142					0.03299266665965206
DAYKGLFEV	9	Unmodified	_DAYKGLFEV_					0	0	0		nc|ENSG00000101474|Q9HDC9-2|APMAP;ENSG00000101474|ENST00000217456|APMAP	nc|ENSG00000101474|Q9HDC9-2|APMAP	nc|ENSG00000101474|Q9HDC9-2|APMAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2665405273438	2	521.266207	1040.51786	0.43286	0.00022563	1.147	0.00059789	1.5798	0.00082352	521.2667564121037	62.167	0.90265	62.167	61.677	62.58	0					81	33	3	0	0	0	0.013404	1	15313	15313		74.2	39.798	1	2233100			5096	1707	2501	2501	7143	7143					-0.0007765216794268781
DAYKGLFEV	9	Unmodified	_DAYKGLFEV_					0	0	0		nc|ENSG00000101474|Q9HDC9-2|APMAP;ENSG00000101474|ENST00000217456|APMAP	nc|ENSG00000101474|Q9HDC9-2|APMAP	nc|ENSG00000101474|Q9HDC9-2|APMAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2664184570312	2	521.266207	1040.51786	0.19657	0.00010247	1.3247	0.00069051	1.5212	0.00079297	521.2667880023824	62.089	0.87598	62.186	61.67	62.546	0.096985					76	31	3	0	0	0	0.0073901	1	15284	15284		83.429	41.589	1	2169400			5097	1707	2501	2501	7144	7144					-0.0007765216794268781
DAYKGLFEV	9	Unmodified	_DAYKGLFEV_					0	0	0		nc|ENSG00000101474|Q9HDC9-2|APMAP;ENSG00000101474|ENST00000217456|APMAP	nc|ENSG00000101474|Q9HDC9-2|APMAP	nc|ENSG00000101474|Q9HDC9-2|APMAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2666015625	2	521.266207	1040.51786	0.32304	0.00016839	1.155	0.00060208	1.4781	0.00077048	521.2667440087839	62.163	0.8699	62.155	61.644	62.514	-0.0085526					80	31	3	0	0	0	0.003673	1	15303	15303		96.936	34.363	1	2189400			5098	1707	2501	2501	7145	7145					-0.0007765216794268781
DAYKIRIRI	9	Unmodified	_DAYKIRIRI_					0	0	0		chr1:155904801-155910450|161|12.85|0.22|5.85|-|2|None,RIT1|1;nc|ENSG00000143622|Q92963-2|RIT1;ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1;chr1:155910804-155910878|508|18.34|0.85|4.43|-|ENST00000368322|RIT1,RIT1	chr1:155904801-155910450|161|12.85|0.22|5.85|-|2|None,RIT1|1	chr1:155904801-155910450|161|12.85|0.22|5.85|-|2|None,RIT1|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.3509521484375	2	574.35094	1146.68733	0.12627	7.2526E-05	-0.13445	-7.722E-05	-0.0081732	-4.6943E-06	574.3508285114076	42.73	1.0319	42.73	42.383	43.414	0					116	37	5	0	0	0	0.0023895	2	9349	9301;9349		107.1	27.659	1	6681500			5099	110	2502	2502	7146;7147	7147					0.11985088905248631
DAYKIRIRI	9	Unmodified	_DAYKIRIRI_					0	0	0		chr1:155904801-155910450|161|12.85|0.22|5.85|-|2|None,RIT1|1;nc|ENSG00000143622|Q92963-2|RIT1;ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1;chr1:155910804-155910878|508|18.34|0.85|4.43|-|ENST00000368322|RIT1,RIT1	chr1:155904801-155910450|161|12.85|0.22|5.85|-|2|None,RIT1|1	chr1:155904801-155910450|161|12.85|0.22|5.85|-|2|None,RIT1|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.3509521484375	2	574.35094	1146.68733	0.24867	0.00014282	-0.12916	-7.4185E-05	0.1195	6.8637E-05	574.3508210312064	42.459	1.0369	42.544	42.153	43.19	0.085201					113	37	5	0	0	0	0.0041491	3	9253	9210;9253;9295		93.166	14.324	1	6796700			5100	110	2502	2502	7148;7149;7150	7149					0.11985088905248631
DAYKIRIRI	9	Unmodified	_DAYKIRIRI_					0	0	0		chr1:155904801-155910450|161|12.85|0.22|5.85|-|2|None,RIT1|1;nc|ENSG00000143622|Q92963-2|RIT1;ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1;chr1:155910804-155910878|508|18.34|0.85|4.43|-|ENST00000368322|RIT1,RIT1	chr1:155904801-155910450|161|12.85|0.22|5.85|-|2|None,RIT1|1	chr1:155904801-155910450|161|12.85|0.22|5.85|-|2|None,RIT1|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.3508911132812	2	574.35094	1146.68733	0.20169	0.00011584	-0.075425	-4.332E-05	0.12626	7.2518E-05	574.3508452750808	42.393	1.0282	42.484	42.067	43.095	0.091362					104	36	4	0	0	0	0.0028542	1	9188	9188		103.42	17.778	1	7055700			5101	110	2502	2502	7151	7151					0.11985088905248631
DAYLQILI	8	Unmodified	_DAYLQILI_					0	0	0		ENST00000484890.5_1_1:52211210-52222042:+|nuORF;ENST00000473207.6_1_1:52195646-52226369:+|nuORF;nc|ENSG00000117859|Q96SU4-3|OSBPL9;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9	ENST00000484890.5_1_1:52211210-52222042:+|nuORF	ENST00000484890.5_1_1:52211210-52222042:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.77374267578125	2	474.773668	947.532783	0.22758	0.00010805	-0.19745	-9.3744E-05	0.030126	1.4303E-05	474.77355871317553	89.335	1.2793	89.335	88.844	90.123	0					182	82	4	0	0	0	0.050146	3	23620	23620;23661;23671		78.149	13.913	1	1792500			5102	2809	2503	2503	7152;7153;7154	7152					0.056918397000458754
DAYLQILI	8	Unmodified	_DAYLQILI_					0	0	0		ENST00000484890.5_1_1:52211210-52222042:+|nuORF;ENST00000473207.6_1_1:52195646-52226369:+|nuORF;nc|ENSG00000117859|Q96SU4-3|OSBPL9;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9	ENST00000484890.5_1_1:52211210-52222042:+|nuORF	ENST00000484890.5_1_1:52211210-52222042:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.77374267578125	2	474.773668	947.532783	0.3202	0.00015202	-0.3235	-0.00015359	-0.0033012	-1.5673E-06	474.7734666242733	89.3	1.2606	89.391	88.993	90.254	0.090561					199	84	4	0	0	0	0.050146	4	23581	23581;23622;23666;23689		78.149	13.913	1	1966600			5103	2809	2503	2503	7155;7156;7157;7158	7155					0.056918397000458754
DAYLQILI	8	Unmodified	_DAYLQILI_					0	0	0		ENST00000484890.5_1_1:52211210-52222042:+|nuORF;ENST00000473207.6_1_1:52195646-52226369:+|nuORF;nc|ENSG00000117859|Q96SU4-3|OSBPL9;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9	ENST00000484890.5_1_1:52211210-52222042:+|nuORF	ENST00000484890.5_1_1:52211210-52222042:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.7737121582031	2	474.773668	947.532783	0.34164	0.0001622	-0.38608	-0.0001833	-0.044436	-2.1097E-05	474.77343635605797	89.406	0.93388	89.406	89.051	89.984	-0.00080872					143	65	3	0	0	0	0.029748	2	23642	23603;23642		88.904	7.2905	1	1259600			5104	2809	2503	2503	7159;7160	7160					0.056918397000458754
DAYLQRIL	8	Unmodified	_DAYLQRIL_					0	0	0		ENSG00000132003|ENST00000590508|ZSWIM4	ENSG00000132003|ENST00000590508|ZSWIM4	ENSG00000132003|ENST00000590508|ZSWIM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2831115722656	2	496.282192	990.549831	0.17898	8.8825E-05	0.19445	9.6501E-05	0.37343	0.00018533	496.2823669752095	59.685	0.56084	59.685	59.445	60.006	0					37	19	3	0	0	0	0.26342	1	14555	14555		47.749	9.7747	1	443710			5105	3605	2504	2504	7161	7161					0.054177603058633395
DAYLQRIL	8	Unmodified	_DAYLQRIL_					0	0	0		ENSG00000132003|ENST00000590508|ZSWIM4	ENSG00000132003|ENST00000590508|ZSWIM4	ENSG00000132003|ENST00000590508|ZSWIM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2820129394531	2	496.282192	990.549831	0.20548	0.00010198	0.16314	8.0963E-05	0.36862	0.00018294	496.2823817932428	59.548	0.4436	59.644	59.412	59.855	0.095089					27	15	2	0	0	0	0.18459	1	14507	14507		45.7	9.5726	1	386070			5106	3605	2504	2504	7162	7162					0.054177603058633395
DAYLQRIL	8	Unmodified	_DAYLQRIL_					0	0	0		ENSG00000132003|ENST00000590508|ZSWIM4	ENSG00000132003|ENST00000590508|ZSWIM4	ENSG00000132003|ENST00000590508|ZSWIM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.28277587890625	2	496.282192	990.549831	0.4333	0.00021504	0.20405	0.00010127	0.63735	0.00031631	496.28240814611434	59.649	0.45588	59.638	59.43	59.886	-0.011486					32	15	3	0	0	0	0.17289	1	14543	14543		47.749	9.7747	1	409930			5107	3605	2504	2504	7163	7163					0.054177603058633395
DAYLQRILA	9	Unmodified	_DAYLQRILA_					0	0	0		ENSG00000132003|ENST00000590508|ZSWIM4	ENSG00000132003|ENST00000590508|ZSWIM4	ENSG00000132003|ENST00000590508|ZSWIM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8014526367188	2	531.800749	1061.58694	0.35063	0.00018647	-0.63236	-0.00033629	-0.28173	-0.00014982	531.8003395321109	60.21	0.48671	60.199	60.057	60.544	-0.011486					28	17	2	0	0	0	0.086462	1	14761	14761		40.239	16.219	1	766390			5108	3605	2505	2505	7164	7164					0.05861431851622001
DAYLVHLI	8	Unmodified	_DAYLVHLI_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;nc|ENSG00000105671|Q9Y6V7-2|DDX49;ENST00000595858.5_1_19:19032475-19037138:+|nuORF;ENST00000601803.5_1_19:19032987-19035509:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2661437988281	2	472.26601	942.517468	0.17094	8.073E-05	-0.00061255	-2.8929E-07	0.17033	8.0441E-05	472.2660634124696	68.779	2.078	68.779	68.462	70.54	0					180	75	5	0	0	0	0.0010088	5	17339	17291;17339;17388;17432;17483		144.01	39.697	1	10645000			5109	2006	2506	2506	7165;7166;7167;7168;7169	7166					0.04390972902854173
DAYLVHLI	8	Unmodified	_DAYLVHLI_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;nc|ENSG00000105671|Q9Y6V7-2|DDX49;ENST00000595858.5_1_19:19032475-19037138:+|nuORF;ENST00000601803.5_1_19:19032987-19035509:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.26611328125	2	472.26601	942.517468	0.23422	0.00011062	-0.099275	-4.6884E-05	0.13495	6.3731E-05	472.2659975324496	68.709	2.045	68.781	68.459	70.504	0.071938					188	73	5	0	0	0	0.004968	5	17320	17272;17320;17365;17406;17452		127.54	31.041	1	10668000			5110	2006	2506	2506	7170;7171;7172;7173;7174	7171					0.04390972902854173
DAYLVHLI	8	Unmodified	_DAYLVHLI_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;nc|ENSG00000105671|Q9Y6V7-2|DDX49;ENST00000595858.5_1_19:19032475-19037138:+|nuORF;ENST00000601803.5_1_19:19032987-19035509:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2661437988281	2	472.26601	942.517468	0.25991	0.00012275	-0.14318	-6.7619E-05	0.11673	5.5126E-05	472.26597157309914	68.818	1.8485	68.799	68.458	70.307	-0.019157					170	66	5	0	0	0	0.0010088	4	17379	17284;17333;17379;17422		144.01	39.697	1	10048000			5111	2006	2506	2506	7175;7176;7177;7178	7177					0.04390972902854173
DAYMTRSL	8	Oxidation (M)	_DAYM(Oxidation (M))TRSL_		DAYM(1)TRSL		DAYM(96)TRSL	0	0	1		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7262268066406	2	486.726392	971.438231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.996	1	29.996	29.496	30.496	0								0	0	0	0.0070267	1	5435	5435		96.111	56.154	1				5112	1258	2507	2507	7179	7179		150			-0.04863042113584015
DAYMTRSL	8	Oxidation (M)	_DAYM(Oxidation (M))TRSL_		DAYM(1)TRSL		DAYM(69)TRSL	0	0	1		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7266845703125	2	486.726392	971.438231	0.012002	5.8417E-06	0.5739	0.00027933	0.5859	0.00028517	486.7265776868567	30.019	0.60723	30.046	29.728	30.335	0.027157					43	20	3	0	0	0	0.069188	1	5414	5414		69.105	35.002	1	260440			5113	1258	2507	2507	7180	7180		150			-0.04863042113584015
DAYPNGLQV	9	Unmodified	_DAYPNGLQV_					0	0	0		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2847900390625	2	488.740357	975.46616	0.34043	0.00016638	-0.12183	-5.9542E-05	0.21861	0.00010684	488.74024103435437	55.586	0.69031	55.586	55.302	55.992	0					56	24	3	0	0	0	0.16853	1	13285	13285		24.991	9.1438	1	1836100			5114	2786	2508	2508	7181	7181					-0.022553958618459546
DAYPNGLQV	9	Unmodified	_DAYPNGLQV_					0	0	0		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2847595214844	2	488.740357	975.46616	0.53353	0.00026076	-0.41166	-0.0002012	0.12186	5.956E-05	488.74010046635857	55.562	0.61126	55.633	55.347	55.958	0.070885					57	22	3	0	0	0	0.18936	1	13253	13253		20.415	11.031	1	1932900			5115	2786	2508	2508	7182	7182					-0.022553958618459546
DAYPNGLQV	9	Unmodified	_DAYPNGLQV_					0	0	0		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7403564453125	2	488.740357	975.46616	0.4327	0.00021148	-0.10258	-5.0137E-05	0.33012	0.00016134	488.74020565809997	55.657	0.83956	55.638	55.319	56.159	-0.019081					68	30	3	0	0	0	0.089483	1	13261	13261		43.982	43.982	1	1668300			5116	2786	2508	2508	7183	7183					-0.022553958618459546
DAYPTFLAV	9	Unmodified	_DAYPTFLAV_					0	0	0		ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7555847167969	2	498.755475	995.496398	0.35434	0.00017673	-0.43021	-0.00021457	-0.075876	-3.7843E-05	498.75540794625925	81.331	1.5104	81.331	80.599	82.11	0					161	66	4	0	0	0	0.00014409	5	21164	21118;21164;21206;21249;21298		133.7	73.312	1	2113800			5117	3683	2509	2509	7184;7185;7186;7187;7188	7185					-0.0015303719667372206
DAYPTFLAV	9	Unmodified	_DAYPTFLAV_					0	0	0		ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.75567626953125	2	498.755475	995.496398	0.087197	4.349E-05	-0.063657	-3.1749E-05	0.02354	1.1741E-05	498.75551208091684	81.266	1.4368	81.335	80.632	82.069	0.068993					176	66	4	0	0	0	0.00014409	5	21118	21078;21118;21160;21212;21265		133.7	73.312	1	2010700			5118	3683	2509	2509	7189;7190;7191;7192;7193	7190					-0.0015303719667372206
DAYPTFLAV	9	Unmodified	_DAYPTFLAV_					0	0	0		ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.75567626953125	2	498.755475	995.496398	0.35328	0.0001762	0.0010705	5.3389E-07	0.35435	0.00017673	498.7554215055721	81.369	0.9848	81.345	81.019	82.004	-0.02404					129	42	4	0	0	0	0.00014409	4	21165	21165;21207;21252;21305		133.7	73.312	1	1880400			5119	3683	2509	2509	7194;7195;7196;7197	7194					-0.0015303719667372206
DAYQTREI	8	Unmodified	_DAYQTREI_					0	0	0		nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-3|AKAP9	nc|ENSG00000127914|Q99996-3|AKAP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2430725097656	2	498.243264	994.471974	0.48005	0.00023918	-0.42611	-0.0002123	0.05394	2.6875E-05	498.243052688585	30.156	0.66521	30.156	29.888	30.553	0					74	23	5	0	0	0	0.0099863	2	5464	5464;5516		117.76	69.415	1	876310			5120	3339	2510	2510	7198;7199	7198					-0.025482973501880224
DAYQTREI	8	Unmodified	_DAYQTREI_					0	0	0		nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-3|AKAP9	nc|ENSG00000127914|Q99996-3|AKAP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2431945800781	2	498.243264	994.471974	0.44444	0.00022144	-0.65815	-0.00032792	-0.21371	-0.00010648	498.2430282010682	30.173	0.76405	30.201	29.901	30.665	0.027946					71	26	4	0	0	0	0.011813	2	5469	5469;5519		114.2	70.343	1	712450			5121	3339	2510	2510	7200;7201	7200					-0.025482973501880224
DAYQTREI	8	Unmodified	_DAYQTREI_					0	0	0		nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9	nc|ENSG00000127914|Q99996-3|AKAP9	nc|ENSG00000127914|Q99996-3|AKAP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.2431640625	2	498.243264	994.471974	0.042428	2.1139E-05	-0.18498	-9.2164E-05	-0.14255	-7.1024E-05	498.24328499659373	30.127	0.63117	30.154	29.923	30.555	0.027157					64	21	4	0	0	0	0.018967	2	5470	5470;5517		103.42	55.074	1	736890			5122	3339	2510	2510	7202;7203	7202					-0.025482973501880224
DAYQVLSTL	9	Unmodified	_DAYQVLSTL_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.E750Dfs*31|1|0.27|ENSG00000101972|chrX:124066420-124066430|AAAGCAGCTCT/-|frameshift_variant;STAG2|p.L995*|1|0.54|ENSG00000101972|chrX:124083478-124083478|T/-|frameshift_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2635498046875	2	505.263665	1008.51278	0.19326	9.7646E-05	0.52164	0.00026357	0.7149	0.00036121	505.2635598611099	76.281	2.4547	76.281	75.794	78.249	0					246	90	7	0	0	0	0.00018703	1	19644	19644		145.13	66.98	1	8897500			5123	1732	2511	2511	7204	7204					0.008860439694331035
DAYQVLSTL	9	Unmodified	_DAYQVLSTL_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.E750Dfs*31|1|0.27|ENSG00000101972|chrX:124066420-124066430|AAAGCAGCTCT/-|frameshift_variant;STAG2|p.L995*|1|0.54|ENSG00000101972|chrX:124083478-124083478|T/-|frameshift_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.265625	2	505.263665	1008.51278	0.16026	8.0976E-05	0.514	0.00025971	0.67427	0.00034068	505.26360474710174	76.203	2.4655	76.257	75.756	78.221	0.053421					257	88	7	0	0	0	0.086462	1	19797	19797		40.239	12.61	1	9333800			5124	1732	2511	2511	7205	7205					0.008860439694331035
DAYQVLSTL	9	Unmodified	_DAYQVLSTL_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.E750Dfs*31|1|0.27|ENSG00000101972|chrX:124066420-124066430|AAAGCAGCTCT/-|frameshift_variant;STAG2|p.L995*|1|0.54|ENSG00000101972|chrX:124083478-124083478|T/-|frameshift_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7713928222656	2	505.263665	1008.51278	0.38108	0.00019254	0.51488	0.00026015	0.89596	0.00045269	505.2635602415875	76.304	2.3958	76.272	75.803	78.198	-0.031487					233	87	7	0	0	0	0.22188	1	19573	19573		20.454	2.3186	1	8297900			5125	1732	2511	2511	7206	7206					0.008860439694331035
DAYRALQKL	9	Unmodified	_DAYRALQKL_					0	0	0		ENST00000467731.1_1_21:33057290-33073360:-|nuORF;SCAF4|p.P721Hfs*25|1|0.28|ENSG00000156304|chr21:31685611-31685617|TGGAGGA/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3062133789062	2	539.306198	1076.59784	0.1047	5.6466E-05	-0.11892	-6.4133E-05	-0.014215	-7.6665E-06	539.3059359322467	39.039	1.26	39.039	38.571	39.831	0					126	45	4	0	0	0	0.00019464	2	8204	8204;8249		133.05	47.78	1	2241100			5126	5231	2512	2512	7207;7208	7207					0.06260834225895451
DAYRALQKL	9	Unmodified	_DAYRALQKL_					0	0	0		ENST00000467731.1_1_21:33057290-33073360:-|nuORF;SCAF4|p.P721Hfs*25|1|0.28|ENSG00000156304|chr21:31685611-31685617|TGGAGGA/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.3060302734375	2	539.306198	1076.59784	0.3446	0.00018584	-0.51027	-0.00027519	-0.16567	-8.9346E-05	539.3057655646259	38.922	1.206	39.014	38.544	39.75	0.09267					108	43	4	0	0	0	0.00051734	1	8171	8171		128.93	43.66	1	3024600			5127	5231	2512	2512	7209	7209					0.06260834225895451
DAYRALQKL	9	Unmodified	_DAYRALQKL_					0	0	0		ENST00000467731.1_1_21:33057290-33073360:-|nuORF;SCAF4|p.P721Hfs*25|1|0.28|ENSG00000156304|chr21:31685611-31685617|TGGAGGA/-|frameshift_variant;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	ENST00000467731.1_1_21:33057290-33073360:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.3059692382812	2	539.306198	1076.59784	0.67935	0.00036638	-0.72345	-0.00039016	-0.0441	-2.3783E-05	539.3056765913562	38.94	1.1385	39.04	38.598	39.736	0.099407					111	40	4	0	0	0	0.0016712	1	8151	8151		114.2	28.93	1	2577600			5128	5231	2512	2512	7210	7210					0.06260834225895451
DAYSFSRKI	9	Unmodified	_DAYSFSRKI_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;ENST00000538600.1_1_12:6631091-6632090:+|nuORF	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.782958984375	2	543.782556	1085.55056	0.85567	0.0004653	0.035051	1.906E-05	0.89072	0.00048436	543.7826164864016	37.317	0.71592	37.317	36.844	37.56	0					98	25	5	0	0	0	5.2813E-06	1	7658	7658		140.63	79.276	1	4996700			5129	420	2513	2513	7211	7211					0.01120554954900399
DAYSFSRKI	9	Unmodified	_DAYSFSRKI_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;ENST00000538600.1_1_12:6631091-6632090:+|nuORF	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7830810546875	2	543.782556	1085.55056	0.64645	0.00035153	0.11229	6.1063E-05	0.75874	0.00041259	543.7826840940613	37.091	0.76347	37.179	36.815	37.578	0.087406					98	27	4	0	0	0	0.00013946	1	7654	7654		148.27	62.627	1	4514900			5130	420	2513	2513	7212	7212					0.01120554954900399
DAYSFSRKI	9	Unmodified	_DAYSFSRKI_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2;ENST00000538600.1_1_12:6631091-6632090:+|nuORF	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.7830810546875	2	543.782556	1085.55056	0.79724	0.00043353	0.078548	4.2713E-05	0.87579	0.00047624	543.7826581284166	37.144	0.68018	37.237	36.818	37.498	0.093014					96	24	5	0	0	0	0.00066273	1	7605	7605		117.76	32.119	1	4991600			5131	420	2513	2513	7213	7213					0.01120554954900399
DAYSSFRSV	9	Unmodified	_DAYSSFRSV_					0	0	0		nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2435913085938	2	516.243264	1030.47197	0.28757	0.00014846	0.10607	5.4756E-05	0.39364	0.00020321	516.2432282074915	43.966	1.1092	43.966	43.63	44.739	0					90	40	4	0	0	0	0.00010651	2	9726	9677;9726		139.78	77.209	1	3797900			5132	4501	2514	2514	7214;7215	7215					-0.04204297350179331
DAYSSFRSV	9	Unmodified	_DAYSSFRSV_					0	0	0		nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2434692382812	2	516.243264	1030.47197	0.35017	0.00018077	0.020996	1.0839E-05	0.37117	0.00019161	516.2432159549417	43.534	0.83638	43.611	43.347	44.183	0.077518					80	30	4	0	0	0	0.001957	3	9551	9551;9598;9646		110.55	58.124	1	4211100			5133	4501	2514	2514	7216;7217;7218	7216					-0.04204297350179331
DAYSSFRSV	9	Unmodified	_DAYSSFRSV_					0	0	0		nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.243408203125	2	516.243264	1030.47197	0.32513	0.00016785	0.032178	1.6612E-05	0.35731	0.00018446	516.2432222235708	43.547	0.74745	43.631	43.356	44.103	0.083996					82	27	4	0	0	0	0.0016724	3	9578	9536;9578;9627		114.19	60.354	1	4447500			5134	4501	2514	2514	7219;7220;7221	7220					-0.04204297350179331
DAYTGPKCPF	10	Unmodified	_DAYTGPKCPF_					0	0	0			REV__ENST00000490758.6_1_1:109656894-109730836:+|nuORF	REV__ENST00000490758.6_1_1:109656894-109730836:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3052368164062	2	549.749867	1097.48518	0.23532	0.00012937	0.11867	6.5239E-05	0.35399	0.0001946	549.7500107638942	65.35	0.93419	65.439	64.905	65.839	0.088882					58	34	2	0	0	0	0.31267	1	16385	16385		6.2058	0	1	158520	+		5135	14922	2515	2515	7222	7222					-0.059661825624516496
DAYTHLETF	9	Unmodified	_DAYTHLETF_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7510375976562	2	548.750921	1095.48729	0.45168	0.00024786	0.49544	0.00027188	0.94712	0.00051973	548.7509960053914	52.398	0.52857	52.398	52.239	52.767	0					32	18	3	0	0	0	0.11461	1	12330	12330		36.127	20.28	1	678680			5136	2627	2516	2516	7223	7223					-0.05663430552999671
DAYTHLETF	9	Unmodified	_DAYTHLETF_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.8631591796875	2	548.750921	1095.48729	0.53675	0.00029454	0.26035	0.00014287	0.7971	0.00043741	548.7510687087623	52.309	0.59518	52.359	52.116	52.711	0.050575					31	21	2	0	0	0	0.16284	1	12281	12281		30.637	14.868	1	519350			5137	2627	2516	2516	7224	7224					-0.05663430552999671
DAYTHLETF	9	Unmodified	_DAYTHLETF_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3619384765625	2	548.750921	1095.48729	0.37587	0.00020626	0.70649	0.00038769	1.0824	0.00059395	548.7511845873058	52.519	0.53934	52.518	52.332	52.872	-0.00081253					36	19	2	0	0	0	0.12743	1	12336	12336		24.021	24.021	1	397660			5138	2627	2516	2516	7225	7225					-0.05663430552999671
DAYTHPQFV	9	Unmodified	_DAYTHPQFV_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000431492.2_1_1:192216230-192216602:-|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2544555664062	2	539.253631	1076.49271	0.55299	0.0002982	0.92106	0.00049668	1.474	0.00079489	539.2539880021121	46.032	0.65623	46.032	45.746	46.402	0					42	23	2	0	0	0	0.0079761	2	10379	10328;10379		82.529	46.485	1	1838500			5139	5802	2517	2517	7226;7227	7227					-0.04247706970522813
DAYTHPQFV	9	Unmodified	_DAYTHPQFV_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000431492.2_1_1:192216230-192216602:-|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.25439453125	2	539.253631	1076.49271	0.26407	0.0001424	1.0623	0.00057282	1.3263	0.00071523	539.254210135944	45.847	0.66612	45.907	45.593	46.259	0.059834					64	23	4	0	0	0	0.0079761	1	10274	10274		82.529	46.485	1	1998100			5140	5802	2517	2517	7228	7228					-0.04247706970522813
DAYTHPQFV	9	Unmodified	_DAYTHPQFV_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1;ENST00000431492.2_1_1:192216230-192216602:-|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.2543334960938	2	539.253631	1076.49271	0.70929	0.00038249	0.83114	0.00044819	1.5404	0.00083068	539.2539654904317	45.843	0.63221	45.908	45.647	46.279	0.065048					63	22	4	0	0	0	0.0037449	1	10259	10259		96.367	60.322	1	1913400			5141	5802	2517	2517	7229	7229					-0.04247706970522813
DAYTKKELI	9	Unmodified	_DAYTKKELI_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.359375	2	540.800414	1079.58628	0.29439	0.00015921	0.39543	0.00021385	0.68982	0.00037306	540.8004059734931	31.524	0.59796	31.524	31.231	31.829	0					59	21	5	0	0	0	0.21026	1	5933	5933		28.495	10.121	1	839450			5142	4024	2518	2518	7230	7230					0.04966592411892634
DAYTKKELI	9	Unmodified	_DAYTKKELI_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8006591796875	2	540.800414	1079.58628	0.29822	0.00016128	0.2436	0.00013174	0.54182	0.00029302	540.8003812211671	31.473	0.41321	31.515	31.296	31.709	0.042366					34	14	3	0	0	0	0.0023895	1	5896	5896		107.1	43.139	1	829990			5143	4024	2518	2518	7231	7231					0.04966592411892634
DAYTKKELI	9	Unmodified	_DAYTKKELI_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.80078125	2	540.800414	1079.58628	0.52428	0.00028353	0.28612	0.00015473	0.8104	0.00043826	540.8002858917134	31.453	0.65968	31.494	31.23	31.89	0.040991					53	23	4	0	0	0	0.003673	1	5880	5880		96.936	41.433	1	911140			5144	4024	2518	2518	7232	7232					0.04966592411892634
DAYTSSQKV	9	Unmodified	_DAYTSSQKV_					0	0	0		ENSG00000169905|ENST00000609928|TOR1AIP2	ENSG00000169905|ENST00000609928|TOR1AIP2	ENSG00000169905|ENST00000609928|TOR1AIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.74322509765625	2	499.743096	997.47164	0.19411	9.7003E-05	-0.025968	-1.2977E-05	0.16814	8.4026E-05	499.74307196505526	22.487	0.71748	22.487	22.252	22.969	0					49	24	3	0	0	0	0.073988	1	3157	3157		43.982	23.528	1	180350			5145	6401	2519	2519	7233	7233					-0.027197170700446804
DAYTSSQKV	9	Unmodified	_DAYTSSQKV_					0	0	0		ENSG00000169905|ENST00000609928|TOR1AIP2	ENSG00000169905|ENST00000609928|TOR1AIP2	ENSG00000169905|ENST00000609928|TOR1AIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7429504394531	2	499.743096	997.47164	0.18238	9.1144E-05	-0.18118	-9.0544E-05	0.0012003	5.9985E-07	499.7431176845774	22.659	0.61596	22.572	22.321	22.937	-0.087608					34	21	2	0	0	0	0.064268	1	3199	3199		47.594	27.141	1	142280			5146	6401	2519	2519	7234	7234					-0.027197170700446804
DAYTSSQKV	9	Unmodified	_DAYTSSQKV_					0	0	0		ENSG00000169905|ENST00000609928|TOR1AIP2	ENSG00000169905|ENST00000609928|TOR1AIP2	ENSG00000169905|ENST00000609928|TOR1AIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7433166503906	2	499.743096	997.47164	0.16981	8.4861E-05	-0.11246	-5.6201E-05	0.057349	2.866E-05	499.74314587819384	22.655	0.6829	22.61	22.321	23.004	-0.044867					33	23	2	0	0	0	0.013404	1	3201	3201		74.2	50.41	1	171120			5147	6401	2519	2519	7235	7235					-0.027197170700446804
DAYTVIQV	8	Unmodified	_DAYTVIQV_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5;nc|ENSG00000135631|Q9BXF6|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.7398681640625	2	454.739825	907.465098	0.38502	0.00017509	-0.18386	-8.3607E-05	0.20117	9.1478E-05	454.7396568837985	64.192	1.0505	64.192	63.859	64.91	0					100	38	4	0	0	0	0.024266	3	15949	15895;15949;16000		96.285	21.862	1	1599700			5148	3888	2520	2520	7236;7237;7238	7237					0.007663897692282262
DAYTVIQV	8	Unmodified	_DAYTVIQV_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5;nc|ENSG00000135631|Q9BXF6|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.7398376464844	2	454.739825	907.465098	0.32457	0.0001476	-0.20988	-9.5439E-05	0.1147	5.2158E-05	454.73963745113696	64.089	0.86604	64.182	63.822	64.688	0.09288					77	31	4	0	0	0	0.024266	3	15919	15864;15919;15970		96.285	21.862	1	1745700			5149	3888	2520	2520	7239;7240;7241	7240					0.007663897692282262
DAYTVIQV	8	Unmodified	_DAYTVIQV_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5;nc|ENSG00000135631|Q9BXF6|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.7397766113281	2	454.739825	907.465098	0.37612	0.00017104	-0.26187	-0.00011908	0.11425	5.1954E-05	454.7396091173976	64.184	0.98916	64.174	63.822	64.811	-0.0095291					83	35	4	0	0	0	0.035151	3	15936	15888;15936;15989		85.272	21.036	1	1425100			5150	3888	2520	2520	7242;7243;7244	7243					0.007663897692282262
DAYTVLTRI	9	Unmodified	_DAYTVLTRI_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2928466796875	2	526.292756	1050.57096	0.3883	0.00020436	-3.1309E-05	-1.6478E-08	0.38827	0.00020434	526.2926567942374	61.179	0.81846	61.179	60.936	61.755	0					84	30	4	0	0	0	2.4752E-08	3	15032	14982;15032;15088		179.17	71.987	1	8906400			5151	7351	2521	2521	7245;7246;7247	7246					0.04769725614687559
DAYTVLTRI	9	Unmodified	_DAYTVLTRI_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2930297851562	2	526.292756	1050.57096	0.31261	0.00016453	0.066706	3.5107E-05	0.37932	0.00019963	526.2926761357153	61.094	0.92067	61.191	60.896	61.817	0.096985					90	33	5	0	0	0	3.6949E-07	4	14984	14939;14984;15039;15089		165.72	69.609	1	9859700			5152	7351	2521	2521	7248;7249;7250;7251	7249					0.04769725614687559
DAYTVLTRI	9	Unmodified	_DAYTVLTRI_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.2931518554688	2	526.292756	1050.57096	0.39105	0.00020581	0.077128	4.0592E-05	0.46818	0.0002464	526.2926941901276	61.156	0.86507	61.147	60.918	61.783	-0.0094566					85	31	4	0	0	0	2.4752E-08	3	15007	14956;15007;15060		179.17	71.987	1	11445000			5153	7351	2521	2521	7252;7253;7254	7253					0.04769725614687559
DAYTVQQL	8	Unmodified	_DAYTVQQL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.23468017578125	2	469.234907	936.455261	0.20891	9.8029E-05	-0.12358	-5.7989E-05	0.085331	4.004E-05	469.2347838942446	51.276	1.019	51.276	50.922	51.941	0					94	37	4	0	0	0	1.4262E-09	3	11923	11923;11975;12052		188.58	95.755	1	4576100			5154	700	2522	2522	7255;7256;7257	7255					-0.015507982361441464
DAYTVQQL	8	Unmodified	_DAYTVQQL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.2347106933594	2	469.234907	936.455261	0.15428	7.2392E-05	-0.13293	-6.2376E-05	0.021344	1.0015E-05	469.23475301427203	51.233	0.71344	51.28	50.985	51.699	0.046574					79	26	4	0	0	0	1.4262E-09	2	11922	11922;11966		188.58	95.755	1	4822100			5155	700	2522	2522	7258;7259	7258					-0.015507982361441464
DAYTVQQL	8	Unmodified	_DAYTVQQL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.2348937988281	2	469.234907	936.455261	0.30812	0.00014458	-0.027439	-1.2875E-05	0.28068	0.00013171	469.2347941346363	51.29	0.97638	51.3	51.016	51.992	0.0095634					91	36	4	0	0	0	1.4262E-09	3	11960	11916;11960;12010		188.58	95.755	1	3944900			5156	700	2522	2522	7260;7261;7262	7261					-0.015507982361441464
DAYVAYGTV	9	Unmodified	_DAYVAYGTV_					0	0	0			REV__ENSG00000275793|ENST00000619918|RIMBP3	REV__ENSG00000275793|ENST00000619918|RIMBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2773742675781	2	479.729458	957.444362	0.35416	0.0001699	-1.3373	-0.00064154	-0.98314	-0.00047164	479.7285968672751	77.15	0.56534	77.15	76.879	77.444	0					34	20	2	0	0	0	0.22596	1	19899	19899		6.7232	0	1	206490	+		5157	18248	2523	2523	7263	7263					-0.036062006104316424
DAYVGYMTI	9	Oxidation (M)	_DAYVGYM(Oxidation (M))TI_		DAYVGYM(1)TI		DAYVGYM(180)TI	0	0	1		nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-2|FBXO11;nc|ENSG00000138081|Q86XK2-3|FBXO11;FBXO11|p.A486Pfs*31|1|0.33|ENSG00000138081|chr2:47823304-47823304|T/-|frameshift_variant	nc|ENSG00000138081|Q86XK2-6|FBXO11;FBXO11|p.A486Pfs*31|1|0.33|ENSG00000138081|chr2:47823304-47823304|T/-|frameshift_variant	FBXO11|p.A486Pfs*31|1|0.33|ENSG00000138081|chr2:47823304-47823304|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.73681640625	2	524.736425	1047.4583	0.58907	0.00030911	0.073249	3.8436E-05	0.66232	0.00034755	524.736399463845	58.297	1.3435	58.297	57.953	59.297	0					108	46	5	0	0	0	3.327E-09	4	14122	14074;14122;14165;14217		180.01	125.24	1	6564600			5158	4115;12342	2524	2524	7264;7265;7266;7267	7265		528			-0.06353291173650177
DAYVGYMTI	9	Oxidation (M)	_DAYVGYM(Oxidation (M))TI_		DAYVGYM(1)TI		DAYVGYM(180)TI	0	0	1		nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-2|FBXO11;nc|ENSG00000138081|Q86XK2-3|FBXO11;FBXO11|p.A486Pfs*31|1|0.33|ENSG00000138081|chr2:47823304-47823304|T/-|frameshift_variant	nc|ENSG00000138081|Q86XK2-6|FBXO11;FBXO11|p.A486Pfs*31|1|0.33|ENSG00000138081|chr2:47823304-47823304|T/-|frameshift_variant	FBXO11|p.A486Pfs*31|1|0.33|ENSG00000138081|chr2:47823304-47823304|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7366943359375	2	524.736425	1047.4583	0.50095	0.00026287	0.11391	5.9771E-05	0.61486	0.00032264	524.7363919240333	58.147	1.2002	58.233	57.92	59.12	0.085621					107	42	5	0	0	0	3.327E-09	4	14070	14021;14070;14112;14218		180.01	125.24	1	6478600			5159	4115;12342	2524	2524	7268;7269;7270;7271	7269		528			-0.06353291173650177
DAYVGYMTI	9	Oxidation (M)	_DAYVGYM(Oxidation (M))TI_		DAYVGYM(1)TI		DAYVGYM(180)TI	0	0	1		nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-2|FBXO11;nc|ENSG00000138081|Q86XK2-3|FBXO11;FBXO11|p.A486Pfs*31|1|0.33|ENSG00000138081|chr2:47823304-47823304|T/-|frameshift_variant	nc|ENSG00000138081|Q86XK2-6|FBXO11;FBXO11|p.A486Pfs*31|1|0.33|ENSG00000138081|chr2:47823304-47823304|T/-|frameshift_variant	FBXO11|p.A486Pfs*31|1|0.33|ENSG00000138081|chr2:47823304-47823304|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7367553710938	2	524.736425	1047.4583	0.859	0.00045075	-0.15102	-7.9245E-05	0.70798	0.0003715	524.736272869326	58.318	1.1331	58.303	57.979	59.112	-0.015663					116	40	6	0	0	0	3.327E-09	3	14119	14071;14119;14167		180.01	125.24	1	6966800			5160	4115;12342	2524	2524	7272;7273;7274	7273		528			-0.06353291173650177
DAYVILKTV	9	Unmodified	_DAYVILKTV_					0	0	0		nc|ENSG00000148180|P06396|GSN;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;CON__Q3SX14	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.30010986328125	2	511.30005	1020.58555	0.29185	0.00014922	-0.096841	-4.9515E-05	0.19501	9.9708E-05	511.29993583096905	59.004	0.96685	59.004	58.654	59.621	0					104	33	5	0	0	0	1.6536E-07	4	14352	14306;14352;14403;14466		173.69	77.575	1	5549700		+	5161	12749	2525	2525	7275;7276;7277;7278	7276					0.07607797762864266
DAYVILKTV	9	Unmodified	_DAYVILKTV_					0	0	0		nc|ENSG00000148180|P06396|GSN;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;CON__Q3SX14	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.3002624511719	2	511.30005	1020.58555	0.29841	0.00015258	-0.089238	-4.5628E-05	0.20917	0.00010695	511.2999389742338	58.87	0.93502	58.961	58.612	59.547	0.091301					99	32	4	0	0	0	1.6536E-07	5	14306	14260;14306;14350;14393;14422		173.69	62.627	1	5598200		+	5162	12749	2525	2525	7279;7280;7281;7282;7283	7280					0.07607797762864266
DAYVILKTV	9	Unmodified	_DAYVILKTV_					0	0	0		nc|ENSG00000148180|P06396|GSN;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;CON__Q3SX14	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.30010986328125	2	511.30005	1020.58555	0.3233	0.00016531	-0.17604	-9.0012E-05	0.14726	7.5294E-05	511.29988859385884	58.95	0.88363	58.936	58.656	59.54	-0.014267					96	30	4	0	0	0	1.6536E-07	3	14293	14293;14336;14389		173.69	77.575	1	5929200		+	5163	12749	2525	2525	7284;7285;7286	7284					0.07607797762864266
DAYVIVYSV	9	Unmodified	_DAYVIVYSV_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7684936523438	2	514.768583	1027.52261	0.21289	0.00010959	-0.48526	-0.0002498	-0.27237	-0.00014021	514.7682691863764	73.972	0.87562	73.972	73.632	74.507	0					65	29	3	0	0	0	0.03069	3	19008	19008;19048;19057		60.074	33.19	1	2570100			5164	6097	2526	2526	7287;7288;7289	7287					0.009952319747981164
DAYVIVYSV	9	Unmodified	_DAYVIVYSV_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7688598632812	2	514.768583	1027.52261	0.16854	8.676E-05	-0.48254	-0.0002484	-0.314	-0.00016164	514.7683669630696	73.98	0.88731	74.032	73.632	74.519	0.052368					67	30	3	0	0	0	0.037019	1	18979	18979		57.722	33.701	1	1879300			5165	6097	2526	2526	7290	7290					0.009952319747981164
DAYVIVYSV	9	Unmodified	_DAYVIVYSV_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7684936523438	2	514.768583	1027.52261	0.16453	8.4694E-05	-0.55523	-0.00028582	-0.39071	-0.00020112	514.7682978993666	74.066	0.94838	74.035	73.61	74.558	-0.030655					70	33	3	0	0	0	0.0037772	2	18963	18963;19011		96.111	58.137	1	2164300			5166	6097	2526	2526	7291;7292	7291					0.009952319747981164
DAYVLPKL	8	Unmodified	_DAYVLPKL_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000447425.1_1_7:22813267-22813561:-|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7684020996094	2	459.768386	917.522219	-0.16351	-7.5176E-05	0.22613	0.00010397	0.062624	2.8792E-05	459.76843205187265	59.678	1.3591	59.678	59.188	60.548	0					130	48	4	0	0	0	0.0018053	4	14542	14490;14542;14596;14645		133.7	48.345	1	12810000			5167	7993	2527	2527	7293;7294;7295;7296	7294					0.060158570455996596
DAYVLPKL	8	Unmodified	_DAYVLPKL_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000447425.1_1_7:22813267-22813561:-|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.7684020996094	2	459.768386	917.522219	-0.10897	-5.0101E-05	0.14405	6.6232E-05	0.035085	1.6131E-05	459.7683982767624	59.551	1.3903	59.646	59.187	60.577	0.095093					145	50	5	0	0	0	0.0045426	7	14478	14429;14478;14521;14571;14615;14668;14675		128.37	43.009	1	13157000			5168	7993	2527	2527	7297;7298;7299;7300;7301;7302;7303	7298					0.060158570455996596
DAYVLPKL	8	Unmodified	_DAYVLPKL_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000447425.1_1_7:22813267-22813561:-|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.76849365234375	2	459.768386	917.522219	0.25107	0.00011543	-0.074283	-3.4153E-05	0.17678	8.128E-05	459.7682932798773	59.614	1.3131	59.603	59.116	60.429	-0.011486					137	46	4	0	0	0	0.011048	5	14559	14465;14514;14559;14614;14685		115.69	41.269	1	13101000			5169	7993	2527	2527	7304;7305;7306;7307;7308	7306					0.060158570455996596
DAYVLPKLY	9	Unmodified	_DAYVLPKLY_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3012084960938	2	541.30005	1080.58555	0.72747	0.00039378	-0.12515	-6.7744E-05	0.60232	0.00032604	541.3008058564964	65.898	3.1175	65.898	65.319	68.436	0					258	111	6	0	0	0	0.0010463	5	16522	16382;16430;16479;16522;16567		122.18	68.949	1	62180000			5170	7993	2528	2528	7309;7310;7311;7312;7313	7312					0.04847797762840855
DAYVLPKLY	9	Unmodified	_DAYVLPKLY_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.3013916015625	2	541.30005	1080.58555	0.71512	0.00038709	-0.1177	-6.3713E-05	0.59742	0.00032338	541.3007996563739	65.765	3.2057	65.854	65.27	68.476	0.088882					280	115	6	0	0	0	0.0016361	6	16424	16339;16382;16424;16472;16518;16569		114.65	72.809	1	60972000			5171	7993	2528	2528	7314;7315;7316;7317;7318;7319	7316					0.04847797762840855
DAYVLPKLY	9	Unmodified	_DAYVLPKLY_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.3031005859375	2	541.30005	1080.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.117	1	87.204	86.704	87.704	0.08709								0	0	0	0.22666	1	22950	22950		13.906	3.0821	1				5172	7993	2528	2528	7320	7320					0.04847797762840855
DAYVLPKLY	9	Unmodified	_DAYVLPKLY_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.832275390625	2	541.30005	1080.58555	0.49518	0.00026804	-0.14019	-7.5883E-05	0.35499	0.00019216	541.299955297633	70.213	0.66772	70.279	69.967	70.635	0.06604					31	23	2	0	0	0	0.18936	1	17694	17694		26.268	12.76	1	134140			5173	7993	2528	2528	7321	7321					0.04847797762840855
DAYVLPKLY	9	Unmodified	_DAYVLPKLY_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.3003540039062	2	541.30005	1080.58555	0.67406	0.00036487	-0.11022	-5.9663E-05	0.56384	0.00030521	541.3008010441165	65.893	3.0941	65.881	65.372	68.466	-0.011337					275	110	6	0	0	0	0.0010463	5	16378	16378;16423;16469;16512;16563		122.18	68.949	1	62499000			5174	7993	2528	2528	7322;7323;7324;7325;7326	7322					0.04847797762840855
DAYVLPKLY	9	Unmodified	_DAYVLPKLY_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.300537109375	2	541.30005	1080.58555	0.63107	0.0003416	0.76742	0.0004154	1.3985	0.000757	541.3004637155295	88.284	0.85359	88.281	87.651	88.505	-0.0028381					56	44	2	0	0	0	0.25989	1	23108	23108		14.838	0.93222	1	119340			5175	7993	2528	2528	7327	7327					0.04847797762840855
DAYVLPKLY	9	Unmodified	_DAYVLPKLY_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8321533203125	2	541.30005	1080.58555	0.57368	0.00031053	-1.4796	-0.00080089	-0.90588	-0.00049035	541.2993402628828	70.291	0.46735	70.268	69.913	70.38	-0.02256					26	16	2	0	0	0	0.24471	1	17720	17720		17.113	2.5312	1	180800			5176	7993	2528	2528	7328	7328					0.04847797762840855
DAYVLPKLY	9	Unmodified	_DAYVLPKLY_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.30005	1080.58555	0.61682	0.00033389	0.56728	0.00030707	1.1841	0.00064096	541.300213737774	70.575	0.31226	70.55	70.378	70.69	-0.024872	0.13576	0.00061385	NaN	26.268	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156270			5177	7993	2528	2528							0.04847797762840855
DAYVLPKLYV	10	Unmodified	_DAYVLPKLYV_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.8343505859375	2	590.834257	1179.65396	0.4648	0.00027462	0.017002	1.0045E-05	0.4818	0.00028467	590.8340022529012	71.791	0.77596	71.791	71.491	72.267	0					64	27	3	0	0	0	0.010092	4	18245	18245;18297;18349;18390		82.529	58.509	1	1041900			5178	7993	2529	2529	7329;7330;7331;7332	7329					0.07132042342686873
DAYVLPKLYV	10	Unmodified	_DAYVLPKLYV_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.834228515625	2	590.834257	1179.65396	0.4244	0.00025075	0.082072	4.8491E-05	0.50647	0.00029924	590.8340388748012	71.725	0.79134	71.782	71.537	72.329	0.056572					63	28	3	0	0	0	0.025736	3	18265	18217;18265;18336		65.474	51.568	1	1157300			5179	7993	2529	2529	7333;7334;7335	7334					0.07132042342686873
DAYVLPKLYV	10	Unmodified	_DAYVLPKLYV_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.8343505859375	2	590.834257	1179.65396	0.47298	0.00027945	-0.05653	-3.34E-05	0.41645	0.00024605	590.8339815625851	71.844	0.71194	71.817	71.57	72.282	-0.027275					61	25	3	0	0	0	0.048379	2	18249	18249;18297		59.368	41.222	1	1093100			5180	7993	2529	2529	7336;7337	7336					0.07132042342686873
DAYVLPKLYVK	11	Unmodified	_DAYVLPKLYVK_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.92352294921875	3	436.923585	1307.74892	-0.012179	-5.3213E-06	0.1699	7.4233E-05	0.15772	6.8912E-05	436.9235268662238	55.246	0.69913	55.246	55.008	55.707	0					63	25	3	0	0	0	0.2454	2	13172	13172;13220		27.129	21.345	1	1235700			5181	7993	2530	2530	7338;7339	7338					0.10735975813872756
DAYVLPKLYVK	11	Unmodified	_DAYVLPKLYVK_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.92352294921875	3	436.923585	1307.74892	0.25331	0.00011068	0.070767	3.092E-05	0.32408	0.0001416	437.2578999817157	55.216	0.67182	55.287	55.055	55.727	0.070885					62	24	3	0	0	0	0.19715	2	13145	13145;13193		31.462	27.056	1	963880			5182	7993	2530	2530	7340;7341	7340					0.10735975813872756
DAYVLPKLYVK	11	Unmodified	_DAYVLPKLYVK_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.9235534667969	3	436.923585	1307.74892	0.055741	2.4355E-05	0.22751	9.9403E-05	0.28325	0.00012376	436.9235947510418	55.362	0.59064	55.343	55.08	55.671	-0.019081					51	21	3	0	0	0	0.2454	2	13236	13187;13236		27.129	23.012	1	1338200			5183	7993	2530	2530	7342;7343	7343					0.10735975813872756
DCDKYKESYK	10	Unmodified	_DCDKYKESYK_					0	0	0		ZNF84|p.P570Tfs*3|1|0.13|ENSG00000198040|chr12:133058417-133058418|-/A|frameshift_variant;ENSG00000198040|ENST00000539354|ZNF84	ZNF84|p.P570Tfs*3|1|0.13|ENSG00000198040|chr12:133058417-133058418|-/A|frameshift_variant	ZNF84|p.P570Tfs*3|1|0.13|ENSG00000198040|chr12:133058417-133058418|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.860595703125	3	426.860544	1277.5598	-0.12572	-5.3666E-05	0.10544	4.5007E-05	-0.020285	-8.6591E-06	426.8606129551059	24.372	0.87327	24.372	24.029	24.902	0					73	29	3	0	0	0	0.38062	1	3783	3783		7.0371	0.41363	1	339650			5184	8029	2531	2531	7344	7344					-0.06787464541753252
DCDVEYFTTF	10	Unmodified	_DCDVEYFTTF_					0	0	0			REV__ENSG00000066032|ENST00000402739|CTNNA2	REV__ENSG00000066032|ENST00000402739|CTNNA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.87982177734375	3	413.833995	1238.48016	0.16582	6.8624E-05	-0.81661	-0.00033794	-0.65079	-0.00026932	413.8338042330165	22.382	0.59885	22.282	22.017	22.616	-0.10034					40	21	3	0	0	0	0.3213	1	3213	3213		1.9064	0.83491	1	87983	+		5185	13674	2532	2532	7345	7345					-0.129545312157461
DCKKSSSK	8	Unmodified	_DCKKSSSK_					0	0	0		CON__ENSEMBL:ENSBTAP00000031900	CON__ENSEMBL:ENSBTAP00000031900	CON__ENSEMBL:ENSBTAP00000031900	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2457275390625	2	441.72111	881.427666	0.017313	7.6477E-06	3.7995	0.0016783	3.8168	0.001686	441.7232423329183	24.922	0.50227	24.866	24.572	25.074	-0.055931					24	17	2	0	0	0	0.34353	1	3839	3839		4.756	1.8668	1	37872		+	5186	203	2533	2533	7346	7346					-0.017790247680181892
DCKKSSSK	8	Unmodified	_DCKKSSSK_					0	0	0		CON__ENSEMBL:ENSBTAP00000031900	CON__ENSEMBL:ENSBTAP00000031900	CON__ENSEMBL:ENSBTAP00000031900	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	441.72111	881.427666	-0.12448	-5.4985E-05	4.2742	0.001888	4.1497	0.001833	441.7231554137648	24.821	0.39064	24.79	24.681	25.072	-0.031408	-0.037774	5.1147E-05	NaN	4.756	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47417		+	5187	203	2533	2533							-0.017790247680181892
DCQSSYVL	8	Unmodified	_DCQSSYVL_					0	0	0			REV__L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|53|2|sense	REV__L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|53|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2643127441406	2	457.699843	913.385133	0.2711	0.00012408	0.86886	0.00039768	1.14	0.00052176	457.7000241569179	72.678	1.7632	72.649	72.007	73.77	-0.029305					78	63	2	0	0	0	0.34247	1	18515	18515		8.5933	6.2905	1	132890	+		5188	22822	2534	2534	7347	7347					-0.07502419896252377
DCQWSEPICR	10	Unmodified	_DCQWSEPICR_					0	0	0			REV__LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	REV__LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.22747802734375	3	412.842719	1235.50633	0.03325	1.3727E-05	3.9141	0.0016159	3.9474	0.0016296	412.8443869035569	16.936	0.13625	16.822	16.775	16.912	-0.11434					7	4	2	0	0	0	0.32072	1	1501	1501		1.4551	0.82829	1	22890	+		5189	13905	2535	2535	7348	7348					-0.10200540525261204
DDDDETNIE	9	Unmodified	_DDDDETNIE_					0	0	0			REV__ENSG00000143318|ENST00000368078|CASQ1	REV__ENSG00000143318|ENST00000368078|CASQ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.8214111328125	2	533.196373	1064.37819	0.40811	0.0002176	-0.99577	-0.00053094	-0.58765	-0.00031333	533.1957994310159	46.413	0.40339	46.466	46.276	46.679	0.052574					23	14	2	0	0	0	0.2322	1	10492	10492		20.454	8.8133	1	383580	+		5190	16160	2536	2536	7349	7349					-0.15142106033795244
DDDDETNIE	9	Unmodified	_DDDDETNIE_					0	0	0			REV__ENSG00000143318|ENST00000368078|CASQ1	REV__ENSG00000143318|ENST00000368078|CASQ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8209838867188	2	533.196373	1064.37819	0.26514	0.00014137	-0.85698	-0.00045694	-0.59185	-0.00031557	533.1958656413135	46.501	0.41081	46.555	46.298	46.709	0.054371					27	14	3	0	0	0	0.2322	1	10443	10443		20.454	8.8133	1	369780	+		5191	16160	2536	2536	7350	7350					-0.15142106033795244
DDDIAALVVDN	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))DDDIAALVVDN_					1	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENST00000477812.1_1_7:5569027-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.2830200195312	2	601.282783	1200.55101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.854	1	90.854	90.354	91.354	0								0	0	0	0.070244	1	24100	24100		49.742	26.967	1				5192	1050;10962	2537	2537	7351	7351					-0.04124114906539944
DDDIAALVVDN	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))DDDIAALVVDN_					1	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENST00000477812.1_1_7:5569027-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.28369140625	2	601.282783	1200.55101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.677	1	90.767	90.267	91.267	0.090668								0	0	0	0.042211	1	24035	24035		59.013	41.15	1				5193	1050;10962	2537	2537	7352	7352					-0.04124114906539944
DDDIAALVVDN	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))DDDIAALVVDN_					1	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENST00000477812.1_1_7:5569027-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.2839965820312	2	601.282783	1200.55101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.766	1	90.857	90.357	91.357	0.090668								0	0	0	0.087715	1	24062	24062		46.475	23.7	1				5194	1050;10962	2537	2537	7353	7353					-0.04124114906539944
DDDIAALVVDN	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))DDDIAALVVDN_					1	0	0		ENSG00000075624|ENST00000646664|ACTB;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENST00000477812.1_1_7:5569027-5569288:-|nuORF	ENSG00000075624|ENST00000646664|ACTB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.2832641601562	2	601.282783	1200.55101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.825	1	90.826	90.326	91.326	0.0003891								0	0	0	0.036507	1	24079	24079		60.899	38.124	1				5195	1050;10962	2537	2537	7354	7354					-0.04124114906539944
DDDPECWTLT	10	Unmodified	_DDDPECWTLT_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.3214721679688	2	597.734611	1193.45467	0.78777	0.00047088	1.3317	0.00079599	2.1195	0.0012669	597.7351464006382	53.014	0.55299	53.071	52.8	53.353	0.056259					77	19	5	0	0	0	0.31629	1	12535	12535		6.2058	5.0124	1	2313400	+		5196	16705;23038	2538	2538	7355	7355					-0.13432005738172847
DDEITNLWVL	10	Unmodified	_DDEITNLWVL_					0	0	0		ENSG00000236543|ENST00000430816|unknown	ENSG00000236543|ENST00000430816|unknown	ENSG00000236543|ENST00000430816|unknown	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9158020019531	3	406.539799	1216.59757	-0.20148	-8.191E-05	-1.2337	-0.00050154	-1.4352	-0.00058345	406.5390657297929	33.592	0.52679	33.658	33.297	33.824	0.0667					25	18	2	0	0	0	0.3179	1	6572	6572		5.7834	0	1	62206			5197	8503	2539	2539	7356	7356					-0.0020663028460603527
DDFFCEKLD	9	Unmodified	_DDFFCEKLD_					0	0	0			REV__ENSG00000001626|ENST00000003084|CFTR	REV__ENSG00000001626|ENST00000003084|CFTR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7992553710938	2	566.23679	1130.45903	-0.046223	-2.6173E-05	0.45594	0.00025817	0.40972	0.000232	566.2372734818888	14.926	0.60119	14.861	14.646	15.247	-0.064413					51	20	4	0	0	0	0.26168	1	935	935		1.8442	0.36234	1	396800	+		5198	13317	2540	2540	7357	7357					-0.10098496524597067
DDGDDWIRSSA	11	Unmodified	_DDGDDWIRSSA_					0	0	0			REV__nc|ENSG00000163214|Q6P158-2|DHX57	REV__nc|ENSG00000163214|Q6P158-2|DHX57	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.261474609375	2	618.760006	1235.50546	0.20215	0.00012508	-1.4051	-0.0008694	-1.2029	-0.00074432	618.7589007289598	52.456	0.51231	52.507	52.282	52.794	0.050575					29	18	2	0	0	0	0.36943	1	12314	12314		15.248	3.7538	1	547730	+		5199	13297	2541	2541	7358	7358					-0.10287340368950026
DDGDDWIRSSA	11	Unmodified	_DDGDDWIRSSA_					0	0	0			REV__nc|ENSG00000163214|Q6P158-2|DHX57	REV__nc|ENSG00000163214|Q6P158-2|DHX57	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.316162109375	2	618.760006	1235.50546	0.20215	0.00012508	-1.4051	-0.0008694	-1.2029	-0.00074432	618.7589007289598	52.456	0.51231	52.507	52.282	52.794	0.050575					29	18	2	0	0	0	0.32557	1	12305	12305		15.248	3.0078	1	547730	+		5200	13297	2541	2541	7359	7359					-0.10287340368950026
DDGDDWIRSSA	11	Unmodified	_DDGDDWIRSSA_					0	0	0			REV__nc|ENSG00000163214|Q6P158-2|DHX57	REV__nc|ENSG00000163214|Q6P158-2|DHX57	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	618.760006	1235.50546	0.29641	0.00018341	-1.5953	-0.00098714	-1.2989	-0.00080373	618.758804078689	52.521	0.47025	52.521	52.354	52.824	0	-0.052243	-6.6878E-05	NaN	15.248	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393200	+		5201	13297	2541	2541							-0.10287340368950026
DDGDDWIRSSA	11	Unmodified	_DDGDDWIRSSA_					0	0	0			REV__nc|ENSG00000163214|Q6P158-2|DHX57	REV__nc|ENSG00000163214|Q6P158-2|DHX57	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	618.760006	1235.50546	0.13834	8.5598E-05	-1.6037	-0.00099232	-1.4654	-0.00090673	618.7588453101239	52.692	0.43382	52.691	52.495	52.929	-0.00081253	0.1184	-7.7255E-05	NaN	15.248	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	490180	+		5202	13297	2541	2541							-0.10287340368950026
DDGLYGLFY	9	Unmodified	_DDGLYGLFY_					0	0	0			REV__ENST00000562074.2_1_16:66839665-66839833:-|nuORF	REV__ENST00000562074.2_1_16:66839665-66839833:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.742919921875	2	531.742565	1061.47058	0.053116	2.8244E-05	1.6336	0.00086865	1.6867	0.0008969	531.7430071643249	12.853	0.30989	12.754	12.643	12.953	-0.099291					26	10	5	0	0	0	0.34374	1	262	262		2.3027	0.4585	1	78018	+		5203	22314	2542	2542	7360	7360					-0.05769931438931053
DDGLYGLFY	9	Unmodified	_DDGLYGLFY_					0	0	0			REV__ENST00000562074.2_1_16:66839665-66839833:-|nuORF	REV__ENST00000562074.2_1_16:66839665-66839833:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7431640625	2	531.742565	1061.47058	0.05164	2.7459E-05	1.2844	0.00068296	1.336	0.00071042	531.7431166498342	12.854	0.29419	12.786	12.671	12.965	-0.067496					17	9	3	0	0	0	0.34374	1	260	260		2.3027	1.1094	1	77312	+		5204	22314	2542	2542	7361	7361					-0.05769931438931053
DDGLYGLFY	9	Unmodified	_DDGLYGLFY_					0	0	0			REV__ENST00000562074.2_1_16:66839665-66839833:-|nuORF	REV__ENST00000562074.2_1_16:66839665-66839833:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.34375	2	531.742565	1061.47058	0.05164	2.7459E-05	1.2844	0.00068296	1.336	0.00071042	531.7431166498342	12.854	0.29419	12.786	12.671	12.965	-0.067496					17	9	3	0	0	0	0.26117	1	246	246		2.3027	1.6124	1	77312	+		5205	22314	2542	2542	7362	7362					-0.05769931438931053
DDGLYGLFY	9	Unmodified	_DDGLYGLFY_					0	0	0			REV__ENST00000562074.2_1_16:66839665-66839833:-|nuORF	REV__ENST00000562074.2_1_16:66839665-66839833:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.742565	1061.47058	0.14999	7.9758E-05	0.87861	0.0004672	1.0286	0.00054695	531.7429591358565	12.827	0.30678	12.827	12.724	13.031	0	0.038195	-0.00018733	NaN	2.3027	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70320	+		5206	22314	2542	2542							-0.05769931438931053
DDHLAEALL	9	Unmodified	_DDHLAEALL_					0	0	0		ENSG00000109089|ENST00000337231|CDR2L	ENSG00000109089|ENST00000337231|CDR2L	ENSG00000109089|ENST00000337231|CDR2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7822265625	2	498.753464	995.492375	0.45178	0.00022533	-0.30311	-0.00015118	0.14867	7.4151E-05	498.75449743366494	71.878	0.61929	71.935	71.654	72.273	0.056572					33	22	2	0	0	0	0.25526	1	18345	18345		7.9102	0	1	103070			5207	2234	2543	2543	7363	7363					-0.0055512669038080276
DDIIFPFELHK	11	Unmodified	_DDIIFPFELHK_					0	0	0		ENSG00000145016|ENST00000296343|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN	ENSG00000145016|ENST00000296343|RUBCN	ENSG00000145016|ENST00000296343|RUBCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7642517089844	3	458.574844	1372.7027	-0.19609	-8.9923E-05	2.8643	0.0013135	2.6682	0.0012236	458.9101747263691	13.83	0.28957	13.764	13.687	13.977	-0.066068					17	9	2	0	0	0	0.33284	1	540	540		3.3557	1.6135	1	29892			5208	4629	2544	2544	7364	7364					0.03125910911785468
DDNAILKASLQ	11	Unmodified	_DDNAILKASLQ_					0	0	0			REV__ENSG00000165914|ENST00000328459|TTC7B	REV__ENSG00000165914|ENST00000328459|TTC7B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.3348388671875	2	594.31696	1186.61937	0.17585	0.00010451	1.6322	0.00097002	1.808	0.0010745	594.818865286354	24.642	0.22217	24.61	24.515	24.737	-0.031408					10	7	2	0	0	0	0.44443	1	3818	3818		5.4027	0.5057	1	39659	+		5209	17275	2545	2545	7365	7365					0.033521744639756434
DDNRWRIPF	9	Unmodified	_DDNRWRIPF_					0	0	0			REV__ENST00000312423.2_1_19:11486583-11486646:+|nuORF	REV__ENST00000312423.2_1_19:11486583-11486646:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.75335693359375	3	406.871995	1217.59415	0.33917	0.000138	-0.49518	-0.00020147	-0.15601	-6.3477E-05	406.87180090408145	37.458	0.53445	37.458	37.233	37.767	0					41	18	3	0	0	0	0.259	1	7804	7804		2.7352	2.7352	1	408440	+		5210	19908	2546	2546	7366	7366					-0.0059383554796568205
DDNRWRIPF	9	Unmodified	_DDNRWRIPF_					0	0	0			REV__ENST00000312423.2_1_19:11486583-11486646:+|nuORF	REV__ENST00000312423.2_1_19:11486583-11486646:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	406.871995	1217.59415	0.066797	2.7178E-05	-0.079375	-3.2295E-05	-0.012578	-5.1176E-06	406.8719099013821	37.31	0.62116	37.403	37.17	37.791	0.093014	-0.024846	0.00030732	NaN	2.7352	38	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375500	+		5211	19908	2546	2546							-0.0059383554796568205
DDPSLKVLV	9	Unmodified	_DDPSLKVLV_					0	0	0		ENST00000485797.2_1_13:77566979-77589697:-|nuORF;ENST00000470210.1_1_13:77589514-77592857:-|nuORF;ENSG00000005812|ENST00000355619|FBXL3	ENST00000485797.2_1_13:77566979-77589697:-|nuORF	ENST00000485797.2_1_13:77566979-77589697:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.74310302734375	2	493.281857	984.549162	0.44161	0.00021784	0.69356	0.00034212	1.1352	0.00055996	493.2820089369216	62.356	0.38927	62.356	62.162	62.552	0					19	14	2	0	0	0	0.24688	1	15332	15332		14.838	8.6325	1	146300			5212	343	2547	2547	7367	7367					0.05626920866166074
DDRFAFQL	8	Unmodified	_DDRFAFQL_					0	0	0			REV__ENSG00000185133|ENST00000331075|INPP5J	REV__ENSG00000185133|ENST00000331075|INPP5J	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.24798583984375	2	506.248349	1010.48214	0.5036	0.00025495	-0.37547	-0.00019008	0.12813	6.4866E-05	506.24801837231706	55.357	0.63897	55.428	55.112	55.751	0.070885					50	23	3	0	0	0	0.3474	1	13258	13258		25.399	9.5521	1	850150	+		5213	18358	2548	2548	7368	7368					-0.022676896249663514
DDRFAFQL	8	Unmodified	_DDRFAFQL_					0	0	0			REV__ENSG00000185133|ENST00000331075|INPP5J	REV__ENSG00000185133|ENST00000331075|INPP5J	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.248046875	2	506.248349	1010.48214	0.36239	0.00018346	-0.47771	-0.00024184	-0.11532	-5.8381E-05	506.24805107678594	55.588	0.61609	55.569	55.349	55.965	-0.019081					51	22	3	0	0	0	0.3474	1	13312	13312		25.399	8.457	1	851450	+		5214	18358	2548	2548	7369	7369					-0.022676896249663514
DDSDDKRDEF	10	Unmodified	_DDSDDKRDEF_					0	0	0			REV__ENST00000561677.6_1_16:69782679-69783527:-|nuORF	REV__ENST00000561677.6_1_16:69782679-69783527:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5020446777344	3	414.502073	1240.48439	0.010255	4.2508E-06	-0.64822	-0.00026869	-0.63796	-0.00026444	414.5017498222846	58.829	0.56703	58.829	58.595	59.162	0					52	19	5	0	0	0	0.37297	1	14287	14287		8.4443	0.49891	1	450520	+		5215	16065	2549	2549	7370	7370					-0.126233504684933
DDSDDKRDEF	10	Unmodified	_DDSDDKRDEF_					0	0	0			REV__ENST00000561677.6_1_16:69782679-69783527:-|nuORF	REV__ENST00000561677.6_1_16:69782679-69783527:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	414.502073	1240.48439	0.010255	4.2508E-06	-0.64822	-0.00026869	-0.63796	-0.00026444	414.5017498222846	58.829	0.56703	58.829	58.595	59.162	0	0.0029652	0.0003002	NaN	8.4443	52	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	450520	+		5216	16065	2549	2549							-0.126233504684933
DDSDDKRDEF	10	Unmodified	_DDSDDKRDEF_					0	0	0			REV__ENST00000561677.6_1_16:69782679-69783527:-|nuORF	REV__ENST00000561677.6_1_16:69782679-69783527:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	414.502073	1240.48439	0.36101	0.00014964	-0.99733	-0.0004134	-0.63632	-0.00026376	414.50163273463573	58.675	0.56522	58.767	58.418	58.983	0.091301	-0.059286	-0.00013393	NaN	8.4443	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	497050	+		5217	16065	2549	2549							-0.126233504684933
DDSDDKRDEF	10	Unmodified	_DDSDDKRDEF_					0	0	0			REV__ENST00000561677.6_1_16:69782679-69783527:-|nuORF	REV__ENST00000561677.6_1_16:69782679-69783527:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	414.502073	1240.48439	0.31071	0.00012879	-1.0266	-0.00042553	-0.7159	-0.00029674	414.5016821843584	58.896	0.62153	58.882	58.656	59.278	-0.014267	0.056321	-0.00017033	NaN	8.4443	63	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419180	+		5218	16065	2549	2549							-0.126233504684933
DEARMELI	8	Unmodified	_DEARMELI_					0	0	0			REV__nc|ENSG00000179057|Q8N9C0|IGSF22	REV__nc|ENSG00000179057|Q8N9C0|IGSF22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.29779052734375	2	488.742042	975.469531	0.39625	0.00019366	-0.30095	-0.00014709	0.095296	4.6575E-05	488.74184085166104	19.773	0.66846	19.718	19.337	20.006	-0.055693					38	23	2	0	0	0	0.34294	1	2342	2342		7.2892	0.56607	1	63124	+		5219	18058	2550	2550	7371	7371					-0.019184690794986636
DEDEDFARAR	10	Unmodified	_DEDEDFARAR_					0	0	0			REV__ENSG00000133124|ENST00000372129|IRS4	REV__ENSG00000133124|ENST00000372129|IRS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.8874206542969	3	408.514424	1222.52144	-0.33938	-0.00013864	1.3001	0.0005311	0.96069	0.00039245	408.51463667915897	13.687	0.25121	13.588	13.492	13.743	-0.099291					11	8	2	0	0	0	0.32162	1	481	481		0.77653	0.54069	1	13531	+		5220	15610	2551	2551	7372	7372					-0.08091634132051695
DEDEEEMLS	9	Unmodified	_DEDEEEMLS_					0	0	0		ENSG00000171163|ENST00000306601|ZNF692;nc|ENSG00000171163|Q9BU19-5|ZNF692;ENST00000533927.5_1_1:249149922-249151721:-|nuORF;ENST00000470787.6_1_1:249149922-249153146:-|nuORF	ENSG00000171163|ENST00000306601|ZNF692	ENSG00000171163|ENST00000306601|ZNF692	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8526000976562	2	548.702977	1095.3914	0.19004	0.00010427	-0.33611	-0.00018442	-0.14607	-8.0151E-05	548.702577649992	65.186	0.53134	65.174	64.947	65.478	-0.011337					33	19	2	0	0	0	0.25988	1	16228	16228		3.9444	0.3479	1	188840			5221	6520	2552	2552	7373	7373					-0.15247991246042147
DEDGGMNNM	9	Unmodified	_DEDGGMNNM_					0	0	0			REV__nc|ENSG00000110958|Q15185-2|PTGES3	REV__nc|ENSG00000110958|Q15185-2|PTGES3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2961120605469	2	491.665674	981.316795	0.091729	4.51E-05	0.87326	0.00042935	0.96499	0.00047445	491.66599510379893	18.161	0.86365	18.103	17.707	18.57	-0.058174					44	30	2	0	0	0	0.26188	1	1875	1875		1.6526	0.96225	1	44508	+		5222	14697	2553	2553	7374	7374					-0.1746103253841511
DEEEERRTL	9	Unmodified	_DEEEERRTL_					0	0	0			REV__ENSG00000161609|ENST00000447857|KASH5	REV__ENSG00000161609|ENST00000447857|KASH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.8062133789062	2	588.778199	1175.54184	0.88405	0.00052051	-1.6128	-0.00094956	-0.72871	-0.00042905	588.7771211249293	50.736	0.9222	50.745	50.298	51.22	0.0095634					58	29	3	0	0	0	0.24848	1	11720	11720		13.906	0	1	489830	+		5223	16942	2554	2554	7375	7375					-0.03890463472225747
DEEEMEDLL	9	Unmodified	_DEEEMEDLL_					0	0	0		nc|ENSG00000236320|P0C7P3-2|SLFN14;ENSG00000236320|ENST00000674182|SLFN14	nc|ENSG00000236320|P0C7P3-2|SLFN14	nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.2744140625	2	561.728994	1121.44344	0.64518	0.00036242	-1.587	-0.00089148	-0.94184	-0.00052906	561.7281053048158	56.424	0.64066	56.424	56.158	56.799	0					35	23	2	0	0	0	0.25622	1	13630	13630		7.2892	0.56607	1	559530			5224	8500	2555	2555	7376	7376					-0.11242827832302282
DEESQQKSSGR	11	Unmodified	_DEESQQKSSGR_					0	0	0			REV__SSR3|p.K4R|1|0.33|ENSG00000114850|chr3:156555079-156555079|T/C|missense_variant	REV__SSR3|p.K4R|1|0.33|ENSG00000114850|chr3:156555079-156555079|T/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9136657714844	3	417.5251	1249.55347	0.42702	0.00017829	2.4946	0.0010415	2.9216	0.0012198	417.86032757131824	21.162	0.22706	21.052	20.894	21.121	-0.11003					11	7	2	0	0	0	0.33282	1	2766	2766		1.0136	0	1	24911	+		5225	23310	2556	2556	7377	7377					-0.0613226644891256
DEFFFDRHP	9	Unmodified	_DEFFFDRHP_					0	0	0		ENSG00000131398|ENST00000477616|KCNC3;nc|ENSG00000129159|P48547|KCNC1;ENSG00000129159|ENST00000265969|KCNC1	ENSG00000131398|ENST00000477616|KCNC3	ENSG00000131398|ENST00000477616|KCNC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.259765625	2	605.269813	1208.52507	0.48336	0.00029256	0.79587	0.00048172	1.2792	0.00077428	605.2703233158599	59.129	1.402	59.22	58.502	59.904	0.091301					72	49	2	0	0	0	0.25066	1	14187	14187		7.2892	0	1	290250			5226	3561	2557	2557	7378	7378					-0.07084919567523684
DEGMDYERAF	10	Unmodified	_DEGMDYERAF_					0	0	0		POLL|p.L95F|1|0.19|ENSG00000166169|chr10:101585989-101585989|G/A|missense_variant	POLL|p.L95F|1|0.19|ENSG00000166169|chr10:101585989-101585989|G/A|missense_variant	POLL|p.L95F|1|0.19|ENSG00000166169|chr10:101585989-101585989|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2384948730469	3	411.501127	1231.48155	0.1556	6.4029E-05	-2.6702	-0.0010988	-2.5146	-0.0010348	411.50018392533127	24.184	0.30225	24.112	23.905	24.207	-0.072559					11	9	2	0	0	0	0.32009	1	3640	3640		1.9064	1.1298	1	24194			5227	13050	2558	2558	7379	7379					-0.12492897126981006
DEINPETKLI	10	Unmodified	_DEINPETKLI_					0	0	0		ENSG00000140093|ENST00000261994|SERPINA10	ENSG00000140093|ENST00000261994|SERPINA10	ENSG00000140093|ENST00000261994|SERPINA10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3145141601562	2	586.313886	1170.61322	0.098216	5.7585E-05	1.3285	0.0007789	1.4267	0.00083649	586.3143980070453	95.936	0.55294	95.936	95.728	96.281	0					78	55	2	0	0	0	0.39935	1	25665	25665		3.5965	0.60125	1	112790			5228	4283	2559	2559	7380	7380					0.03473656232426947
DEIREYKF	8	Unmodified	_DEIREYKF_					0	0	0		nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;ENSG00000151746|ENST00000652176|BICD1	nc|ENSG00000151746|Q96G01-4|BICD1	nc|ENSG00000151746|Q96G01-4|BICD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2771606445312	2	550.274564	1098.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.184	1	80.249	79.749	80.749	0.065094								0	0	0	0.33122	1	20816	20816		23.148	3.7094	1				5229	4982	2560	2560	7381	7381					-0.010751512820206699
DEKIVLWFR	9	Unmodified	_DEKIVLWFR_					0	0	0			REV__nc|ENSG00000117791|Q969Z3-2|MTARC2	REV__nc|ENSG00000117791|Q969Z3-2|MTARC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8361206054688	2	603.337498	1204.66044	0.21127	0.00012747	-0.24438	-0.00014744	-0.033107	-1.9975E-05	603.3374641046819	12.685	0.32196	12.586	12.407	12.729	-0.09929					14	10	2	0	0	0	0.26188	1	199	199		1.6526	0.17072	1	44315	+		5230	14991	2561	2561	7382	7382					0.0662998029404207
DEKKFVNQV	9	Unmodified	_DEKKFVNQV_					0	0	0			REV__ENSG00000160505|ENST00000301295|NLRP4	REV__ENSG00000160505|ENST00000301295|NLRP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.7855224609375	2	553.795663	1105.57677	0.62272	0.00034486	-0.23582	-0.0001306	0.3869	0.00021426	553.7955557877825	32.407	0.47097	32.462	32.233	32.704	0.055309					35	16	3	0	0	0	0.21303	1	6156	6156		21.747	4.6338	1	243120	+		5231	16905	2562	2562	7383	7383					0.028208241263882883
DEKKLTKA	8	Unmodified	_DEKKLTKA_					0	0	0			REV__ENST00000493706.1_1_2:216990646-216992426:+|nuORF	REV__ENST00000493706.1_1_2:216990646-216992426:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2818298339844	2	466.7742	931.533846	-0.32686	-0.00015257	0.22914	0.00010696	-0.097724	-4.5615E-05	466.77417310439813	13.173	0.33757	13.173	13.09	13.427	0					18	11	2	0	0	0	0.34414	1	406	406		2.0598	1.535	1	32175	+		5232	13866	2563	2563	7384	7384					0.06534054068947626
DEKKQLKRFST	11	Unmodified	_DEKKQLKRFST_					0	0	0		ENSG00000125703|ENST00000317868|ATG4C	ENSG00000125703|ENST00000317868|ATG4C	ENSG00000125703|ENST00000317868|ATG4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.2538146972656	3	460.592898	1378.75686	0.14916	6.8704E-05	-0.075012	-3.455E-05	0.074151	3.4154E-05	460.59272997927104	37.201	0.60143	37.288	36.95	37.552	0.08741					35	21	2	0	0	0	0.33296	1	7620	7620		2.6312	1.4164	1	405850			5233	3224	2564	2564	7385	7385					0.08263503063358257
DEKKQLKRFST	11	Unmodified	_DEKKQLKRFST_					0	0	0		ENSG00000125703|ENST00000317868|ATG4C	ENSG00000125703|ENST00000317868|ATG4C	ENSG00000125703|ENST00000317868|ATG4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.2540588378906	3	460.592898	1378.75686	0.34372	0.00015832	-0.27176	-0.00012517	0.071963	3.3146E-05	460.5927859056823	37.147	0.46419	37.24	37.06	37.524	0.093018					26	16	2	0	0	0	0.33296	1	7580	7580		2.6312	0.37851	1	406500			5234	3224	2564	2564	7386	7386					0.08263503063358257
DEKTASELKIL	11	Unmodified	_DEKTASELKIL_					0	0	0		nc|ENSG00000148835|Q15542-2|TAF5;ENSG00000148835|ENST00000369839|TAF5	nc|ENSG00000148835|Q15542-2|TAF5	nc|ENSG00000148835|Q15542-2|TAF5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.2345886230469	3	416.234487	1245.68163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.7	1	103.7	103.2	104.2	-0.0011139								0	0	0	0.35514	1	27575	27575		3.5927	0.52041	1				5235	4830	2565	2565	7387	7387					0.06861900812282329
DELARLKLKPG	11	Unmodified	_DELARLKLKPG_					0	0	0			REV__ENSG00000132405|ENST00000409757|TBC1D14	REV__ENSG00000132405|ENST00000409757|TBC1D14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.372802734375	2	620.374612	1238.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.028	1	97.028	96.528	97.528	0								0	0	0	0.38126	1	25938	25938		1.1933	0	1		+		5236	15569	2566	2566	7388	7388					0.12485323385590164
DELPKKRLPSL	11	Unmodified	_DELPKKRLPSL_					0	0	0			REV__ENSG00000198862|ENST00000361371|LTN1	REV__ENSG00000198862|ENST00000361371|LTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.93017578125	3	432.594238	1294.76089	-0.090245	-3.904E-05	1.8122	0.00078396	1.722	0.00074492	432.5944024536896	41.564	0.30912	41.654	41.429	41.738	0.090248					18	13	2	0	0	0	0.45629	1	8904	8904		3.8459	0.25323	1	2377500	+		5237	18878	2567	2567	7389	7389					0.12529592557098113
DELRWMLT	8	Unmodified	_DELRWMLT_					0	0	0			REV__nc|ENSG00000136487|P01242-3|GH2	REV__nc|ENSG00000136487|P01242-3|GH2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2664184570312	2	532.265684	1062.51682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.6	1	116.6	116.1	117.1	0								0	0	0	0.37724	1	30179	30179		2.3027	0	1		+		5238	15812	2568	2568	7390	7390					-0.011941898085069624
DELSFYVFR	9	Unmodified	_DELSFYVFR_					0	0	0			REV__KIAA0195|p.L1307Cfs*2|1|0.07|ENSG00000177728|chr17:75499000-75499000|C/-|frameshift_variant	REV__KIAA0195|p.L1307Cfs*2|1|0.07|ENSG00000177728|chr17:75499000-75499000|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8167114257812	2	588.290214	1174.56587	0.24166	0.00014217	-2.2311	-0.0013125	-1.9894	-0.0011704	588.2890027515188	61.749	0.57738	61.749	61.537	62.115	0					28	20	3	0	0	0	0.2451	1	15198	15198		15.847	4.2069	1	104910	+		5239	18002	2569	2569	7391	7391					-0.014425782479065674
DELVELWV	8	Unmodified	_DELVELWV_					0	0	0			REV__nc|ENSG00000070610|Q9HCG7-3|GBA2	REV__nc|ENSG00000070610|Q9HCG7-3|GBA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7608642578125	2	501.760758	1001.50696	-0.0003319	-1.6653E-07	0.33927	0.00017023	0.33893	0.00017006	501.7610729873284	12.702	0.62717	12.702	12.273	12.9	0					35	20	4	0	0	0	0.45942	1	219	219		2.5775	0	1	98605	+		5240	13729	2570	2570	7392	7392					0.0062694545777048916
DELVPQPEVSL	11	Unmodified	_DELVPQPEVSL_					0	0	0			REV__nc|ENSG00000149571|Q8IZU9-2|KIRREL3	REV__nc|ENSG00000149571|Q8IZU9-2|KIRREL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2472839355469	3	409.215204	1224.62378	0.036837	1.5074E-05	0.90121	0.00036879	0.93805	0.00038386	409.2155280462788	30.376	1.7069	30.376	29.355	31.062	0					82	60	2	0	0	0	0.33146	1	5621	5621		4.1166	1.3814	1	134500	+		5241	16476	2571	2571	7393	7393					0.0204563888685243
DELVRHHN	8	Unmodified	_DELVRHHN_					0	0	0		nc|ENSG00000184937|P19544-9|WT1;nc|ENSG00000184937|P19544-6|WT1;nc|ENSG00000184937|P19544-2|WT1;nc|ENSG00000184937|P19544-3|WT1;nc|ENSG00000184937|P19544-4|WT1;nc|ENSG00000184937|P19544|WT1;nc|ENSG00000184937|P19544-8|WT1;ENSG00000184937|ENST00000452863|WT1	nc|ENSG00000184937|P19544-9|WT1	nc|ENSG00000184937|P19544-9|WT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8039855957031	2	510.254497	1018.49444	0.36983	0.00018871	-1.3319	-0.00067961	-0.96208	-0.0004909	510.25450008727967	76.858	0.51042	76.858	76.501	77.011	0					29	18	2	0	0	0	0.3408	1	19820	19820		14.838	0.93222	1	118060			5242	7484	2572	2572	7394	7394					-0.014066531619050693
DEMAVFNPVQI	11	Unmodified	_DEMAVFNPVQI_					0	0	0			REV__ENST00000528190.1_1_11:82958997-82971147:+|nuORF	REV__ENST00000528190.1_1_11:82958997-82971147:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.8919982910156	3	421.541034	1261.60127	-0.28632	-0.0001207	1.8753	0.00079051	1.589	0.00066981	421.5417781103415	22.984	0.49746	22.984	22.675	23.173	0					24	16	2	0	0	0	0.3239	1	3307	3307		13.519	6.4816	1	75929	+		5243	21985	2573	2573	7395	7395					-0.01906283782409446
DENNESQGNY	10	Unmodified	_DENNESQGNY_					0	0	0			REV__nc|ENSG00000124191|Q96NM4-3|TOX2	REV__nc|ENSG00000124191|Q96NM4-3|TOX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135986328125	2	585.220714	1168.42687	-0.078288	-4.5816E-05	3.76	0.0022004	3.6817	0.0021546	585.2227449861138	99.612	0.036568	99.612	99.586	99.622	0					6	4	2	0	0	0	0.32033	1	26644	26644		3.5965	1.5367	1	27361	+		5244	15214	2574	2574	7396	7396					-0.15060192674013706
DENNESQGNY	10	Unmodified	_DENNESQGNY_					0	0	0			REV__nc|ENSG00000124191|Q96NM4-3|TOX2	REV__nc|ENSG00000124191|Q96NM4-3|TOX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135986328125	2	585.220714	1168.42687	0.12264	7.177E-05	3.6246	0.0021212	3.7473	0.002193	585.2227006134261	96.408	0.098694	96.485	96.439	96.538	0.077408					16	10	2	0	0	0	0.32033	1	25757	25757		3.5965	1.019	1	69225	+		5245	15214	2574	2574	7397	7397					-0.15060192674013706
DENNESQGNY	10	Unmodified	_DENNESQGNY_					0	0	0			REV__nc|ENSG00000124191|Q96NM4-3|TOX2	REV__nc|ENSG00000124191|Q96NM4-3|TOX2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	585.220714	1168.42687	0.042765	2.5027E-05	4.0512	0.0023709	4.094	0.0023959	585.2231204673745	99.587	0.043747	99.638	99.606	99.65	0.050888	0.012941	0.00018275	NaN	3.5965	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79778	+		5246	15214	2574	2574							-0.15060192674013706
DENVYYTV	8	Unmodified	_DENVYYTV_					0	0	0		ENSG00000184117|ENST00000216121|NIPSNAP1	ENSG00000184117|ENST00000216121|NIPSNAP1	ENSG00000184117|ENST00000216121|NIPSNAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.1929931640625	2	501.724372	1001.43419	0.17319	8.6893E-05	-2.89	-0.00145	-2.7168	-0.0013631	501.72270845932854	23.439	0.4752	23.439	23.224	23.699	0					21	16	2	0	0	0	0.32435	1	3519	3519		23.148	5.0134	1	56544			5247	7429	2575	2575	7398	7398					-0.06646808335676724
DEPRRPEYF	9	Unmodified	_DEPRRPEYF_					0	0	0			REV__ENST00000490483.5_3_19:36500194-36502343:-|nuORF	REV__ENST00000490483.5_3_19:36500194-36502343:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.5274658203125	3	403.528005	1207.56219	-0.56348	-0.00022738	-0.82911	-0.00033457	-1.3926	-0.00056195	403.52757318798217	12.458	0.53624	12.39	12.226	12.762	-0.06806					35	17	3	0	0	0	0.33018	1	136	136		2.4985	0.75621	1	111620	+		5248	19160	2576	2576	7399	7399					-0.03329248021782405
DEPRRPEYF	9	Unmodified	_DEPRRPEYF_					0	0	0			REV__ENST00000490483.5_3_19:36500194-36502343:-|nuORF	REV__ENST00000490483.5_3_19:36500194-36502343:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	403.528005	1207.56219	-0.45736	-0.00018456	-1.1697	-0.00047199	-1.627	-0.00065655	403.52751212550527	12.411	0.72095	12.314	12.206	12.927	-0.096607	-0.059931	-0.00035258	NaN	2.4985	35	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96058	+		5249	19160	2576	2576							-0.03329248021782405
DEQQQLLFPL	10	Unmodified	_DEQQQLLFPL_					0	0	0			REV__ENST00000488007.5_1_12:6649651-6660148:-|nuORF	REV__ENST00000488007.5_1_12:6649651-6660148:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.1865539550781	3	410.883677	1229.6292	-0.14879	-6.1136E-05	-2.2494	-0.00092424	-2.3982	-0.00098538	410.88322884644526	14.599	0.28394	14.494	14.308	14.592	-0.10466					14	9	2	0	0	0	0.32122	1	765	765		2.086	0.17963	1	18626	+		5250	21571	2577	2577	7400	7400					0.023573624693653983
DEQWQFEF	8	Unmodified	_DEQWQFEF_					0	0	0			REV__ENSG00000203326|ENST00000474037|ZNF525	REV__ENSG00000203326|ENST00000474037|ZNF525	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.324462890625	2	564.735271	1127.45599	0.6098	0.00034437	-0.45347	-0.00025609	0.15632	8.828E-05	564.7346724447332	54.673	0.49031	54.673	54.374	54.864	0					38	17	3	0	0	0	0.34167	1	13034	13034		11.64	11.64	1	520020	+		5251	18732	2578	2578	7401	7401					-0.10264003587099069
DEQWQFEF	8	Unmodified	_DEQWQFEF_					0	0	0			REV__ENSG00000203326|ENST00000474037|ZNF525	REV__ENSG00000203326|ENST00000474037|ZNF525	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.29541015625	2	564.735271	1127.45599	0.65813	0.00037167	-0.62092	-0.00035065	0.037211	2.1014E-05	564.7347806525173	54.568	0.56169	54.631	54.353	54.915	0.063206					35	20	2	0	0	0	0.34167	1	12942	12942		11.64	11.64	1	531810	+		5252	18732	2578	2578	7402	7402					-0.10264003587099069
DERELQHRWTT	11	Unmodified	_DERELQHRWTT_					0	0	0			REV__ENSG00000204856|ENST00000377673|FAM216A	REV__ENSG00000204856|ENST00000377673|FAM216A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.21881103515625	3	490.907656	1469.70114	0.015885	7.7979E-06	-1.4626	-0.000718	-1.4467	-0.0007102	490.90773976629305	14.74	0.20203	14.674	14.616	14.818	-0.066067					9	6	2	0	0	0	0.33274	1	804	804		3.5927	0	1	33173	+		5253	18968	2579	2579	7403	7403					-0.014923301242561138
DERKLNIK	8	Unmodified	_DERKLNIK_					0	0	0			REV__ENSG00000151838|ENST00000537690|CCDC175	REV__ENSG00000151838|ENST00000537690|CCDC175	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7663269042969	2	508.298373	1014.58219	0.073459	3.7339E-05	-0.5294	-0.00026909	-0.45594	-0.00023175	508.298372166898	15.691	0.52234	15.581	15.23	15.753	-0.10982					20	17	2	0	0	0	0.34167	1	1058	1058		11.64	1.5664	1	32192	+		5254	16561	2580	2580	7404	7404					0.07548547708847764
DERLRFKGPM	10	Unmodified	_DERLRFKGPM_					0	0	0		ENSG00000186297|ENST00000335625|GABRA5	ENSG00000186297|ENST00000335625|GABRA5	ENSG00000186297|ENST00000335625|GABRA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.5543518066406	3	416.888768	1247.64448	0.035132	1.4646E-05	0.94775	0.00039511	0.98288	0.00040975	416.88925119469036	29.046	0.97951	29.06	28.818	29.798	0.013475					43	34	2	0	0	0	0.32034	1	5271	5271		2.6312	2.6312	1	159910			5255	7607	2581	2581	7405	7405					0.030559507855286938
DERLRFKGPM	10	Unmodified	_DERLRFKGPM_					0	0	0		ENSG00000186297|ENST00000335625|GABRA5	ENSG00000186297|ENST00000335625|GABRA5	ENSG00000186297|ENST00000335625|GABRA5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	416.888768	1247.64448	0.11415	4.759E-05	0.97143	0.00040498	1.0856	0.00045257	417.2237587268594	29.109	0.5136	29.109	28.76	29.273	0	0.024286	1.8966E-05	NaN	2.6312	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159640			5256	7607	2581	2581							0.030559507855286938
DERLRIFALL	10	Unmodified	_DERLRIFALL_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.705078125	2	623.36933	1244.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.408	1	98.47	97.97	98.97	0.061516								0	0	0	0.38189	1	26341	26341		1.1933	0.66858	1				5257	2325	2582	2582	7406	7406					0.11153340731175376
DESIDFENW	9	Unmodified	_DESIDFENW_					0	0	0			REV__nc|ENSG00000017260|P98194-2|ATP2C1	REV__nc|ENSG00000017260|P98194-2|ATP2C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3079833984375	2	577.735468	1153.45638	0.77305	0.00044662	-0.45588	-0.00026338	0.31718	0.00018324	578.2356150835236	77.799	0.30437	77.767	77.678	77.982	-0.031334					12	10	2	0	0	0	0.25706	1	20089	20089		6.7232	1.4925	1	170570	+		5258	13453	2583	2583	7407	7407					-0.11420628657879206
DESKEETCI	9	Unmodified	_DESKEETCI_					0	0	0		nc|ENSG00000160145|O60229-6|KALRN;nc|ENSG00000160145|O60229-4|KALRN;nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN	nc|ENSG00000160145|O60229-6|KALRN	nc|ENSG00000160145|O60229-6|KALRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2239990234375	2	527.223879	1052.43321	0.83608	0.0004408	-0.34696	-0.00018292	0.48913	0.00025788	527.2236872321943	55.848	0.59542	55.918	55.592	56.187	0.070889					38	21	2	0	0	0	0.25989	1	13357	13357		14.838	3.198	1	3211000			5259	5439	2584	2584	7408	7408					-0.09091390766866425
DETEGDSEF	9	Unmodified	_DETEGDSEF_					0	0	0			REV__ENSG00000206043|ENST00000579455|C18orf63	REV__ENSG00000206043|ENST00000579455|C18orf63	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.6879272460938	2	514.688184	1027.36181	0.14201	7.3091E-05	-0.41364	-0.0002129	-0.27163	-0.00013981	514.6879156670387	73.156	0.63125	73.209	72.924	73.555	0.053841					52	22	3	0	0	0	0.27532	1	18681	18681		12.532	0	1	418160	+		5260	19013	2585	2585	7409	7409					-0.15077187199881337
DETEGDSEF	9	Unmodified	_DETEGDSEF_					0	0	0			REV__ENSG00000206043|ENST00000579455|C18orf63	REV__ENSG00000206043|ENST00000579455|C18orf63	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7744140625	2	514.688184	1027.36181	0.14201	7.3091E-05	-0.41364	-0.0002129	-0.27163	-0.00013981	514.6879156670387	73.156	0.63125	73.209	72.924	73.555	0.053841					52	22	3	0	0	0	0.25879	1	18758	18758		4.756	0	1	418160	+		5261	19013	2585	2585	7410	7410					-0.15077187199881337
DETEGDSEF	9	Unmodified	_DETEGDSEF_					0	0	0			REV__ENSG00000206043|ENST00000579455|C18orf63	REV__ENSG00000206043|ENST00000579455|C18orf63	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.6878662109375	2	514.688184	1027.36181	0.271	0.00013948	-0.48109	-0.00024761	-0.21008	-0.00010813	514.6879170599179	73.268	0.68723	73.239	72.98	73.667	-0.029297					72	24	5	0	0	0	0.30623	1	18704	18704		7.9102	0	1	526760	+		5262	19013	2585	2585	7411	7411					-0.15077187199881337
DETEGDSEF	9	Unmodified	_DETEGDSEF_					0	0	0			REV__ENSG00000206043|ENST00000579455|C18orf63	REV__ENSG00000206043|ENST00000579455|C18orf63	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7744140625	2	514.688184	1027.36181	0.271	0.00013948	-0.48109	-0.00024761	-0.21008	-0.00010813	514.6879170599179	73.268	0.68723	73.239	72.98	73.667	-0.029297					72	24	5	0	0	0	0.25879	1	18818	18818		4.756	0	1	526760	+		5263	19013	2585	2585	7412	7412					-0.15077187199881337
DETENQSL	8	Unmodified	_DETENQSL_					0	0	0			REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7663879394531	2	468.201261	934.38797	-0.21532	-0.00010082	0.26256	0.00012293	0.047236	2.2116E-05	468.2013471162641	28.247	0.80555	28.242	27.632	28.438	-0.0042572					33	28	2	0	0	0	0.33245	1	4741	4741		13.508	0	1	113420	+		5264	16426	2586	2586	7413	7413					-0.08184873237757984
DEVPEVFNL	9	Unmodified	_DEVPEVFNL_					0	0	0			REV__nc|ENSG00000109686|Q5HYK7-5|SH3D19	REV__nc|ENSG00000109686|Q5HYK7-5|SH3D19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2622680664062	2	531.261122	1060.50769	0.5269	0.00027992	-0.16194	-8.6032E-05	0.36496	0.00019389	531.2614551819529	59.789	0.50846	59.778	59.459	59.968	-0.011486					24	17	2	0	0	0	0.23767	1	14588	14588		18.146	0	1	294550	+		5265	14649	2587	2587	7414	7414					-0.020142598931897737
DEVRTVPIAKL	11	Unmodified	_DEVRTVPIAKL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000577300.1_1_18:2703698-2706469:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.9150390625	3	414.246839	1239.71869	0.12388	5.1318E-05	1.054	0.00043661	1.1779	0.00048793	414.2474664133283	32.125	2.0387	32.125	31.8	33.839	0					172	72	4	0	0	0	0.33236	1	6303	6303		4.4062	1.3339	1	2244500			5266	1710	2588	2588	7415	7415					0.10841617148707883
DEWEKVKQ	8	Unmodified	_DEWEKVKQ_					0	0	0		nc|ENSG00000105982|Q9H0A6-4|RNF32;nc|ENSG00000105982|Q9H0A6-2|RNF32;ENSG00000105982|ENST00000317955|RNF32;ENST00000469382.1_1_7:156436571-156447430:+|nuORF;nc|ENSG00000105982|Q9H0A6-5|RNF32	nc|ENSG00000105982|Q9H0A6-4|RNF32	nc|ENSG00000105982|Q9H0A6-4|RNF32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.8087158203125	2	531.266739	1060.51892	0.47589	0.00025282	2.9012	0.0015413	3.3771	0.0017941	531.2680273475517	20.044	0.59045	19.929	19.642	20.232	-0.11592					27	20	2	0	0	0	0.34247	1	2393	2393		8.5933	0.68312	1	42897			5267	2043	2589	2589	7416	7416					-0.008914377990549838
DEYPILSLP	9	Unmodified	_DEYPILSLP_					0	0	0		nc|ENSG00000167333|Q6AZZ1-2|TRIM68;ENST00000531101.5_1_11:4621508-4624512:-|nuORF;ENSG00000167333|ENST00000300747|TRIM68	nc|ENSG00000167333|Q6AZZ1-2|TRIM68	nc|ENSG00000167333|Q6AZZ1-2|TRIM68	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3034057617188	2	523.773865	1045.53318	0.58397	0.00030587	-1.0658	-0.00055822	-0.4818	-0.00025235	523.7731491319487	77.121	0.81783	77.177	76.892	77.71	0.05542					54	28	3	0	0	0	0.25706	1	19816	19816		6.7232	3.1267	1	447130			5268	6170	2590	2590	7417	7417					0.012232146292490143
DFAEEDNGT	9	Unmodified	_DFAEEDNGT_					0	0	0			REV__ENSG00000118960|ENST00000304031|HS1BP3	REV__ENSG00000118960|ENST00000304031|HS1BP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8033447265625	2	499.190894	996.367234	0.40484	0.00020209	0.4369	0.0002181	0.84174	0.00042019	499.1910324631262	46.504	0.89732	46.557	45.893	46.79	0.052574					49	32	2	0	0	0	0.24913	1	10417	10417		4.3292	1.7518	1	384350	+		5269	15024	2591	2591	7418	7418					-0.13109463617411166
DFAEEDNGT	9	Unmodified	_DFAEEDNGT_					0	0	0			REV__ENSG00000118960|ENST00000304031|HS1BP3	REV__ENSG00000118960|ENST00000304031|HS1BP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.8033752441406	2	499.190894	996.367234	0.19924	9.9461E-05	0.42212	0.00021072	0.62137	0.00031018	499.19110327831606	46.342	0.88687	46.397	45.94	46.827	0.054375					40	31	2	0	0	0	0.24913	1	10418	10418		4.3292	3.5356	1	352470	+		5270	15024	2591	2591	7419	7419					-0.13109463617411166
DFARKYEQEE	10	Unmodified	_DFARKYEQEE_					0	0	0			REV__ENSG00000153982|ENST00000284116|GDPD1	REV__ENSG00000153982|ENST00000284116|GDPD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.8837585449219	3	438.870208	1313.58879	-0.21811	-9.5724E-05	1.5267	0.00067003	1.3086	0.00057431	438.87138603606144	30.228	0.68179	30.255	29.987	30.669	0.027157					63	23	4	0	0	0	0.37823	1	5464	5464		7.4771	0	1	294040	+		5271	16641	2592	2592	7420	7420					-0.05545603921086695
DFAYFDQYSK	10	Unmodified	_DFAYFDQYSK_					0	0	0			REV__ENST00000559994.5_1_15:85189295-85197510:-|nuORF	REV__ENST00000559994.5_1_15:85189295-85197510:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.5601806640625	3	428.524149	1282.55062	-0.12721	-5.4513E-05	0.70193	0.00030079	0.57472	0.00024628	428.52440746836805	44.093	0.4865	44.093	43.819	44.306	0					47	17	4	0	0	0	0.32034	1	9790	9790		4.7159	1.1289	1	699570	+		5272	22292	2593	2593	7421	7421					-0.0793548983576784
DFDFDEVKF	9	Unmodified	_DFDFDEVKF_					0	0	0		ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.2591552734375	2	581.258579	1160.50261	0.26627	0.00015477	1.3234	0.00076921	1.5896	0.00092398	581.259265462841	43.403	0.65421	43.403	43.087	43.741	0					60	23	4	0	0	0	0.30166	1	9538	9538		8.5933	0.68312	1	910240			5273	5912	2594	2594	7422	7422					-0.0712256375582001
DFDFDEVKF	9	Unmodified	_DFDFDEVKF_					0	0	0		ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	581.258579	1160.50261	0.26627	0.00015477	1.3234	0.00076921	1.5896	0.00092398	581.259265462841	43.403	0.65421	43.403	43.087	43.741	0	0.14656	0.00026156	NaN	8.5933	60	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	910240			5274	5912	2594	2594							-0.0712256375582001
DFDFDEVKF	9	Unmodified	_DFDFDEVKF_					0	0	0		ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	581.258579	1160.50261	0.44775	0.00026026	0.93029	0.00054074	1.378	0.000801	581.2589377206231	43.095	0.54482	43.18	43.03	43.575	0.084663	-0.076506	-0.00019538	NaN	8.5933	61	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	977120			5275	5912	2594	2594							-0.0712256375582001
DFDPYYLTQ	9	Unmodified	_DFDPYYLTQ_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;SCN8A|p.F769Lfs*11|1|0.04|ENSG00000196876|chr12:51751529-51751530|-/ATTAA|frameshift_variant;nc|ENSG00000196876|Q9UQD0-4|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.7716674804688	2	581.258579	1160.50261	-0.35536	-0.00020655	0.54034	0.00031408	0.18498	0.00010752	581.2587150478648	35.194	0.35836	35.27	35.071	35.429	0.075306					19	12	2	0	0	0	0.25526	1	6966	6966		7.9102	0	1	100640			5276	7910	2595	2595	7423	7423					-0.0712256375582001
DFDPYYLTQ	9	Unmodified	_DFDPYYLTQ_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;SCN8A|p.F769Lfs*11|1|0.04|ENSG00000196876|chr12:51751529-51751530|-/ATTAA|frameshift_variant;nc|ENSG00000196876|Q9UQD0-4|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	581.258579	1160.50261	-0.52319	-0.00030411	0.59187	0.00034403	0.06868	3.9921E-05	581.2588433056532	35.184	0.38086	35.261	35.06	35.441	0.077377	-0.004311	2.1352E-05	NaN	4.3292	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110600			5277	7910	2595	2595							-0.0712256375582001
DFEARQLL	8	Unmodified	_DFEARQLL_					0	0	0		nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000146083|ENST00000274811|RNF44;ENST00000515051.1_1_5:175956111-175956726:-|nuORF	nc|ENSG00000146083|Q7L0R7-2|RNF44	nc|ENSG00000146083|Q7L0R7-2|RNF44	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2765808105469	2	496.263999	990.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.68	1	85.671	85.171	86.171	-0.0090027								0	0	0	0.36169	1	22501	22501		9.3474	0	1				5278	4689	2596	2596	7424	7424					0.01780883409139733
DFEFISGTRMR	11	Unmodified	_DFEFISGTRMR_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.2322998046875	3	453.555566	1357.64487	-0.20265	-9.1913E-05	-2.7459	-0.0012454	-2.9486	-0.0013373	453.88856771152837	18.596	0.33479	18.538	18.372	18.707	-0.058172					18	11	2	0	0	0	0.33207	1	1959	1959		5.5233	1.1171	1	52305			5279	4198	2597	2597	7425	7425					-0.019646742852728494
DFFIPERTVIY	11	Unmodified	_DFFIPERTVIY_					0	0	0			REV__ENST00000491056.5_1_2:113587940-113590763:-|nuORF	REV__ENST00000491056.5_1_2:113587940-113590763:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.260986328125	3	467.246727	1398.71835	-0.087144	-4.0718E-05	-0.13191	-6.1634E-05	-0.21905	-0.00010235	467.58106114205884	59.424	0.34632	59.424	59.133	59.479	0					23	11	3	0	0	0	0.46554	1	14424	14424		2.6312	0.19645	1	172370	+		5280	21611	2598	2598	7426	7426					0.034941974288358324
DFFPISDTNG	10	Unmodified	_DFFPISDTNG_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2709350585938	2	556.748379	1111.4822	-0.05711	-3.1796E-05	2.8883	0.001608	2.8312	0.0015763	556.7497879577031	30.221	0.42432	30.248	30.052	30.476	0.027157					15	14	2	0	0	0	0.31691	1	5471	5471		9.3831	2.2814	1	72399	+		5281	19088	2599	2599	7427	7427					-0.06907734415631239
DFHLSSPAKN	10	Unmodified	_DFHLSSPAKN_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;ENST00000502671.5_1_5:57749965-57753328:-|nuORF;ENST00000510629.1_1_5:57752724-57753235:-|nuORF	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3632202148438	2	558.277638	1114.54072	0.35259	0.00019684	-2.5979	-0.0014503	-2.2453	-0.0012535	558.275908765245	71.555	0.47778	71.528	71.288	71.765	-0.027275					33	16	3	0	0	0	0.26905	1	18250	18250		31.268	10.854	1	476890			5282	4661	2600	2600	7428	7428					-0.011966330504719735
DFIKQHSPL	9	Unmodified	_DFIKQHSPL_					0	0	0			REV__ENSG00000164715|ENST00000297293|LMTK2	REV__ENSG00000164715|ENST00000297293|LMTK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.25927734375	2	542.792924	1083.57129	0.89166	0.00048399	0.4604	0.0002499	1.3521	0.00073389	542.7929203335407	56.94	0.61127	56.921	56.646	57.257	-0.019077					27	21	2	0	0	0	0.24289	1	13658	13658		13.042	13.042	1	338470	+		5283	17176	2601	2601	7429	7429					0.032851453345756454
DFILFTKK	8	Unmodified	_DFILFTKK_					0	0	0		nc|ENSG00000114487|Q86VD1-2|MORC1;ENSG00000114487|ENST00000232603|MORC1;nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2	nc|ENSG00000114487|Q86VD1-2|MORC1	nc|ENSG00000114487|Q86VD1-2|MORC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.29595947265625	2	506.29731	1010.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.03	1	114.05	113.55	114.55	0.016708								0	0	0	0.37664	1	29662	29662		2.5775	0	1				5284	2569	2602	2602	7430	7430					0.07520118971035572
DFKAQGPPKP	10	Unmodified	_DFKAQGPPKP_					0	0	0		nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2594604492188	2	542.792924	1083.57129	0.69521	0.00037736	0.29294	0.00015901	0.98816	0.00053636	542.7929346640614	56.731	0.46761	56.809	56.543	57.011	0.078674					32	17	3	0	0	0	0.29589	1	13601	13601		22.736	3.2973	1	342350			5285	4361	2603	2603	7431	7431					0.032851453345756454
DFKHLLAFHF	10	Unmodified	_DFKHLLAFHF_					0	0	0		nc|ENSG00000187595|Q66K41|ZNF385C;ENSG00000187595|ENST00000692273|ZNF385C	nc|ENSG00000187595|Q66K41|ZNF385C	nc|ENSG00000187595|Q66K41|ZNF385C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.9110107421875	3	425.560869	1273.66078	-0.14351	-6.1074E-05	1.2783	0.00054401	1.1348	0.00048293	425.8956160134406	33.343	0.36475	33.343	33.091	33.456	0					17	12	2	0	0	0	0.3156	1	6411	6411		6.1918	0.40842	1	63805			5286	7694	2604	2604	7432	7432					0.034894000139274794
DFKKTAESKN	10	Unmodified	_DFKKTAESKN_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2900390625	2	584.303852	1166.59315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.813	1	66.813	66.313	67.313	0								0	0	0	0.32869	1	16744	16744		23.79	6.6769	1				5287	1113	2605	2605	7433	7433					0.01651905292465017
DFKRIFLRV	9	Unmodified	_DFKRIFLRV_					0	0	0		ENST00000299667.8_1_7:99669697-99669820:-|nuORF	ENST00000299667.8_1_7:99669697-99669820:-|nuORF	ENST00000299667.8_1_7:99669697-99669820:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.3828125	2	597.361308	1192.70806	0.45255	0.00027034	0.55185	0.00032965	1.0044	0.00059999	597.3614350683819	38.147	0.86401	38.147	37.707	38.571	0					67	30	3	0	0	0	0.33276	1	7990	7990		3.9444	0.3479	1	502420			5288	9215	2606	2606	7434	7434					0.11941679284927886
DFKSLRLRRKP	11	Unmodified	_DFKSLRLRRKP_					0	0	0		ENST00000374369.7_1_20:34025707-34025902:-|nuORF	ENST00000374369.7_1_20:34025707-34025902:-|nuORF	ENST00000374369.7_1_20:34025707-34025902:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7562561035156	3	472.624643	1414.8521	-0.075907	-3.5875E-05	-0.32022	-0.00015134	-0.39613	-0.00018722	472.62438720903526	30.221	0.40814	30.248	29.956	30.364	0.027157					20	13	2	0	0	0	0.33339	1	5533	5533		1.0136	0.60531	1	79066			5289	9893	2607	2607	7435	7435					0.16126901045026898
DFKSLRLRRKP	11	Unmodified	_DFKSLRLRRKP_					0	0	0		ENST00000374369.7_1_20:34025707-34025902:-|nuORF	ENST00000374369.7_1_20:34025707-34025902:-|nuORF	ENST00000374369.7_1_20:34025707-34025902:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	472.624643	1414.8521	0.20157	9.5266E-05	-0.76262	-0.00036043	-0.56106	-0.00026517	472.62436130399254	30.138	0.41409	30.138	29.945	30.359	0	-0.044244	-0.00020096	NaN	1.0136	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89847			5290	9893	2607	2607							0.16126901045026898
DFLAHADLQ	9	Unmodified	_DFLAHADLQ_					0	0	0		ENSG00000204347|ENST00000375366|BTBD17	ENSG00000204347|ENST00000375366|BTBD17	ENSG00000204347|ENST00000375366|BTBD17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2393798828125	2	515.253631	1028.49271	0.22906	0.00011802	-1.0565	-0.00054437	-0.82744	-0.00042634	515.2529811917129	55.376	0.48474	55.376	55.198	55.682	0					27	17	2	0	0	0	0.24581	1	13246	13246		16.942	1.0951	1	508550			5291	8218	2608	2608	7436	7436					-0.020397069705268223
DFLAHADLQ	9	Unmodified	_DFLAHADLQ_					0	0	0		ENSG00000204347|ENST00000375366|BTBD17	ENSG00000204347|ENST00000375366|BTBD17	ENSG00000204347|ENST00000375366|BTBD17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2393188476562	2	515.253631	1028.49271	0.45121	0.00023249	-0.97602	-0.0005029	-0.52481	-0.00027041	515.2530387643887	55.353	0.45355	55.424	55.164	55.618	0.070885					27	16	2	0	0	0	0.24581	1	13184	13184		16.942	1.0951	1	404990			5292	8218	2608	2608	7437	7437					-0.020397069705268223
DFLELILTR	9	Unmodified	_DFLELILTR_					0	0	0		nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8035888671875	2	560.324057	1118.63356	0.3004	0.00016832	1.0872	0.00060919	1.3876	0.00077751	560.8264584875119	43.386	0.8046	43.47	43.061	43.866	0.083996					88	29	4	0	0	0	0.2422	1	9530	9530		14.405	2.1647	1	728780			5293	7154	2609	2609	7438	7438					0.07898871682891695
DFLESVKLF	9	Unmodified	_DFLESVKLF_					0	0	0			REV__nc|ENSG00000129515|Q9UNH7-2|SNX6	REV__nc|ENSG00000129515|Q9UNH7-2|SNX6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3153686523438	2	549.297507	1096.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.23	1	64.22	63.72	64.72	-0.0095291								0	0	0	0.22065	1	15942	15942		15.847	1.0089	1		+		5294	15419	2610	2610	7439	7439					0.03603493900232024
DFLLSVIGF	9	Unmodified	_DFLLSVIGF_					0	0	0		ENSG00000142319|ENST00000270349|SLC6A3	ENSG00000142319|ENST00000270349|SLC6A3	ENSG00000142319|ENST00000270349|SLC6A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.9747009277344	2	505.781493	1009.54843	0.082314	4.1633E-05	0.31772	0.0001607	0.40003	0.00020233	505.78137878219957	105.99	0.48308	105.98	105.76	106.24	-0.0027847					118	70	2	0	0	0	0.24311	1	28015	28015		16.942	5.302	1	163270			5295	4436	2611	2611	7440	7440					0.04404126217104931
DFLLTKKF	8	Unmodified	_DFLLTKKF_					0	0	0		ENSG00000124564|ENST00000397060|SLC17A3;nc|ENSG00000124564|O00476|SLC17A3	ENSG00000124564|ENST00000397060|SLC17A3	ENSG00000124564|ENST00000397060|SLC17A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2957458496094	2	506.29731	1010.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.801	1	96.801	96.301	97.301	0								0	0	0	0.36961	1	25875	25875		5.7604	3.1829	1				5296	3165	2612	2612	7441	7441					0.07520118971046941
DFLLTKKF	8	Unmodified	_DFLLTKKF_					0	0	0		ENSG00000124564|ENST00000397060|SLC17A3;nc|ENSG00000124564|O00476|SLC17A3	ENSG00000124564|ENST00000397060|SLC17A3	ENSG00000124564|ENST00000397060|SLC17A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.294921875	2	506.29731	1010.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.76	1	115.76	115.26	116.26	0								0	0	0	0.36961	1	29990	29990		5.7604	2.1639	1				5297	3165	2612	2612	7442	7442					0.07520118971046941
DFLNVKNVYF	10	Unmodified	_DFLNVKNVYF_					0	0	0		ENSG00000181744|ENST00000315691|DIPK2A	ENSG00000181744|ENST00000315691|DIPK2A	ENSG00000181744|ENST00000315691|DIPK2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.23492431640625	3	420.220401	1257.63937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.429	1	43.506	43.006	44.006	0.077515								0	0	0	0.34755	1	9537	9537		9.544	3.3521	1				5298	7245	2613	2613	7443	7443					0.02085970194548281
DFLYAIMELTS	11	Unmodified	_DFLYAIMELTS_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.88226318359375	3	434.881057	1301.62134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.16	1	112.14	111.64	112.64	-0.015625								0	0	0	0.38124	1	29176	29176		1.2148	0.51716	1		+		5299	15095	2614	2614	7444	7444					-0.01740532842450193
DFMLFHSTL	9	Unmodified	_DFMLFHSTL_					0	0	0		ENST00000555793.1_1_14:93275739-93276806:+|nuORF	ENST00000555793.1_1_14:93275739-93276806:+|nuORF	ENST00000555793.1_1_14:93275739-93276806:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7684326171875	2	555.76806	1109.52157	0.57808	0.00032128	-0.59243	-0.00032925	-0.01435	-7.9752E-06	555.767858249524	47.894	0.9503	47.894	47.578	48.528	0					92	33	4	0	0	0	0.21303	1	10983	10983		21.747	3.6003	1	10368000			5300	11850	2615	2615	7445	7445					-0.028813056657327252
DFNAVFVLF	9	Unmodified	_DFNAVFVLF_					0	0	0			REV__ENSG00000203879|ENST00000447750|GDI1	REV__ENSG00000203879|ENST00000447750|GDI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.83984375	2	536.279118	1070.54368	0.29939	0.00016055	0.19094	0.0001024	0.49033	0.00026295	536.2791098842323	74.153	0.69626	74.206	74.007	74.703	0.052361					28	23	2	0	0	0	0.2322	1	19127	19127		20.454	4.6064	1	380870	+		5301	18910	2616	2616	7446	7446					0.011232420743226612
DFNAVFVLF	9	Unmodified	_DFNAVFVLF_					0	0	0			REV__ENSG00000203879|ENST00000447750|GDI1	REV__ENSG00000203879|ENST00000447750|GDI1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	536.279118	1070.54368	0.55772	0.00029909	0.20368	0.00010923	0.7614	0.00040832	536.2791513233722	74.455	0.69459	74.425	74.032	74.726	-0.030655	0.11419	3.828E-05	NaN	14.838	36	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385430	+		5302	18910	2616	2616							0.011232420743226612
DFNNHRLLVI	10	Unmodified	_DFNNHRLLVI_					0	0	0		ENSG00000206557|ENST00000383763|TRIM71	ENSG00000206557|ENST00000383763|TRIM71	ENSG00000206557|ENST00000383763|TRIM71	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.2556762695312	2	620.843479	1239.67241	0.26938	0.00016724	0.38388	0.00023833	0.65326	0.00040557	620.8435938511927	58.913	0.45974	58.899	58.684	59.144	-0.014267					33	15	4	0	0	0	0.32068	1	14254	14254		1.4819	1.4819	1	446590			5303	8323	2617	2617	7447	7447					0.062155970372714364
DFPVAMQI	8	Oxidation (M)	_DFPVAM(Oxidation (M))QI_		DFPVAM(1)QI		DFPVAM(68)QI	0	0	1		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTC|p.V305Cfs*6|1|0.38|ENSG00000141367|chr17:59655965-59655966|-/T|frameshift_variant;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant;ENST00000472129.3_1_17:57725612-57733400:+|nuORF	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.728515625	2	468.728403	935.442254	0.085326	3.9995E-05	0.22366	0.00010484	0.30899	0.00014483	468.7283926058934	62.312	0.88647	62.312	61.945	62.832	0					75	32	3	0	0	0	0.071344	1	15434	15434		68.081	33.978	1	688550			5304	4369;923	2618	2618	7448	7448		116			-0.028049526198856256
DFPVAMQI	8	Oxidation (M)	_DFPVAM(Oxidation (M))QI_		DFPVAM(1)QI		DFPVAM(78)QI	0	0	1		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTC|p.V305Cfs*6|1|0.38|ENSG00000141367|chr17:59655965-59655966|-/T|frameshift_variant;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant;ENST00000472129.3_1_17:57725612-57733400:+|nuORF	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7286071777344	2	468.728403	935.442254	0.054775	2.5675E-05	0.085441	4.0049E-05	0.14022	6.5723E-05	468.72837874646495	62.238	1.0083	62.335	61.924	62.932	0.096985					67	36	3	0	0	0	0.050146	3	15344	15296;15344;15412		78.149	33.742	1	725120			5305	4369;923	2618	2618	7449;7450;7451	7450		116			-0.028049526198856256
DFPVAMQI	8	Oxidation (M)	_DFPVAM(Oxidation (M))QI_		DFPVAM(1)QI		DFPVAM(78)QI	0	0	1		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTC|p.V305Cfs*6|1|0.38|ENSG00000141367|chr17:59655965-59655966|-/T|frameshift_variant;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant;ENST00000472129.3_1_17:57725612-57733400:+|nuORF	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7284240722656	2	468.728403	935.442254	0.22686	0.00010633	0.18042	8.4566E-05	0.40727	0.0001909	468.7283116120175	62.294	0.84908	62.285	61.905	62.755	-0.0085526					66	31	3	0	0	0	0.050146	2	15381	15333;15381		78.149	33.742	1	608090			5306	4369;923	2618	2618	7452;7453	7453		116			-0.028049526198856256
DFSNMLHLKE	10	Unmodified	_DFSNMLHLKE_					0	0	0		ENSG00000173114|ENST00000308478|LRRN3	ENSG00000173114|ENST00000308478|LRRN3	ENSG00000173114|ENST00000308478|LRRN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.8697814941406	3	411.869262	1232.58596	-0.010551	-4.3457E-06	0.86069	0.00035449	0.85013	0.00035014	411.86979489463357	23.023	0.61366	22.936	22.685	23.298	-0.087608					71	21	5	0	0	0	0.40854	1	3327	3327		1.9064	0	1	162460			5307	6692	2619	2619	7454	7454					-0.021031505795917838
DFSNMLHLKE	10	Unmodified	_DFSNMLHLKE_					0	0	0		ENSG00000173114|ENST00000308478|LRRN3	ENSG00000173114|ENST00000308478|LRRN3	ENSG00000173114|ENST00000308478|LRRN3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	411.869262	1232.58596	-0.2857	-0.00011767	1.3662	0.00056271	1.0805	0.00044504	411.86979618612486	22.942	0.57501	22.942	22.622	23.197	0	-0.023929	0.00029578	NaN	1.9064	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134170			5308	6692	2619	2619							-0.021031505795917838
DFSNMLHLKE	10	Unmodified	_DFSNMLHLKE_					0	0	0		ENSG00000173114|ENST00000308478|LRRN3	ENSG00000173114|ENST00000308478|LRRN3	ENSG00000173114|ENST00000308478|LRRN3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	411.869262	1232.58596	0.0762	3.1385E-05	0.93907	0.00038678	1.0153	0.00041816	411.86965719176925	23.066	0.62325	23.021	22.735	23.358	-0.044867	0.054454	-0.00023203	NaN	1.9064	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127300			5309	6692	2619	2619							-0.021031505795917838
DFSPPRCLEGL	11	Unmodified	_DFSPPRCLEGL_					0	0	0		nc|ENSG00000004777|O14559-10|ARHGAP33;ENSG00000004777|ENST00000007510|ARHGAP33	nc|ENSG00000004777|O14559-10|ARHGAP33	nc|ENSG00000004777|O14559-10|ARHGAP33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.5486145019531	3	411.869262	1232.58596	-0.0074318	-3.0609E-06	0.31564	0.00013	0.30821	0.00012694	411.8693135647223	17.049	0.51618	16.931	16.772	17.289	-0.11739					33	18	2	0	0	0	0.3325	1	1555	1555		4.1166	2.9233	1	61721			5310	313	2620	2620	7455	7455					-0.021031505795917838
DFSSFSSREN	10	Unmodified	_DFSSFSSREN_					0	0	0			REV__ENSG00000092470|ENST00000263795|WDR76	REV__ENSG00000092470|ENST00000263795|WDR76	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.2509765625	2	588.251817	1174.48908	0.25003	0.00014708	-1.5969	-0.00093938	-1.3469	-0.0007923	588.2507150141342	80.196	0.54167	80.261	79.979	80.52	0.065094					43	20	3	0	0	0	0.39009	1	20875	20875		5.2969	0.96765	1	298680	+		5311	14083	2621	2621	7456	7456					-0.09118421535026755
DFSSHDEIN	9	Unmodified	_DFSSHDEIN_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;GOLGB1|p.Q2276Gfs*3|1|0.05|ENSG00000173230|chr3:121692520-121692524|TCTGC/-|frameshift_variant	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3114013671875	2	532.219985	1062.42542	0.60873	0.00032398	-1.5939	-0.0008483	-0.98517	-0.00052433	532.2191105375562	66.575	0.37637	66.575	66.341	66.717	0					20	12	2	0	0	0	0.25622	1	16643	16643		7.2892	2.0586	1	107080			5312	6706	2622	2622	7457	7457					-0.10329781972131968
DFTARNANEL	10	Unmodified	_DFTARNANEL_					0	0	0		ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7930908203125	2	575.778002	1149.54145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.555	1	73.609	73.109	74.109	0.053833								0	0	0	0.33119	1	18797	18797		22.736	1.1993	1				5313	6962	2623	2623	7458	7458					-0.027338384014456096
DFVDNEDSL	9	Unmodified	_DFVDNEDSL_					0	0	0			REV__ENSG00000243646|ENST00000290200|IL10RB	REV__ENSG00000243646|ENST00000290200|IL10RB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2236938476562	2	527.222194	1052.42983	0.9037	0.00047645	1.596	0.00084143	2.4997	0.0013179	527.2234770344677	55.909	0.64761	55.89	55.565	56.213	-0.019077					74	23	5	0	0	0	0.20626	1	13419	13419		22.736	6.8891	1	3330300	+		5314	19193	2624	2624	7459	7459					-0.09428317549236453
DFVLKSTDV	9	Unmodified	_DFVLKSTDV_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2896118164062	2	512.27149	1022.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.511	1	68.511	68.011	69.011	0								0	0	0	0.14393	1	17264	17264		36.127	5.9022	1		+		5315	14116	2625	2625	7460	7460					0.018063304864767815
DFVLKSTDV	9	Unmodified	_DFVLKSTDV_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.289794921875	2	512.27149	1022.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.605	1	68.677	68.177	69.177	0.071938								0	0	0	0.19932	1	17288	17288		22.736	0.98964	1		+		5316	14116	2625	2625	7461	7461					0.018063304864767815
DFVSAESIDR	10	Unmodified	_DFVSAESIDR_					0	0	0			REV__ENST00000465478.1_1_8:93156318-93156576:-|nuORF	REV__ENST00000465478.1_1_8:93156318-93156576:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.8101806640625	2	569.772385	1137.53022	0.11591	6.6043E-05	-0.22601	-0.00012877	-0.1101	-6.2729E-05	570.2734754610892	61.767	0.67802	61.767	61.437	62.115	0					27	24	2	0	0	0	0.30586	1	15147	15147		13.906	0	1	212810	+		5317	18761	2626	2626	7462	7462					-0.03304660495587086
DFVSDKIKF	9	Unmodified	_DFVSDKIKF_					0	0	0		ENSG00000100426|ENST00000216268|ZBED4	ENSG00000100426|ENST00000216268|ZBED4	ENSG00000100426|ENST00000216268|ZBED4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3125	2	549.795132	1097.57571	0.2768	0.00015219	3.9419	0.0021672	4.2187	0.0023194	550.2989527786107	76.331	0.44376	76.385	76.25	76.694	0.053413					22	15	2	0	0	0	0.21303	1	19732	19732		21.747	0.87544	1	132930			5318	1595	2627	2627	7463	7463					0.030826097574845335
DFVSLWDLL	9	Unmodified	_DFVSLWDLL_					0	0	0			REV__ENSG00000182022|ENST00000435907|CHST15	REV__ENSG00000182022|ENST00000435907|CHST15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2796020507812	2	554.289682	1106.56481	0.63371	0.00035126	0.41119	0.00022792	1.0449	0.00057918	554.2895631065413	77.442	1.9465	77.442	77.09	79.036	0					165	73	4	0	0	0	0.21303	1	19990	19990		21.747	1.293	1	936280	+		5319	18175	2628	2628	7464	7464					0.01579207383178982
DFVSLWDLL	9	Unmodified	_DFVSLWDLL_					0	0	0			REV__ENSG00000182022|ENST00000435907|CHST15	REV__ENSG00000182022|ENST00000435907|CHST15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2793579101562	2	554.289682	1106.56481	0.61845	0.0003428	0.50542	0.00028015	1.1239	0.00062295	554.289578111614	77.365	1.1885	77.42	77.035	78.223	0.055412					128	42	5	0	0	0	0.21303	2	19937	19937;19961		21.747	4.8044	1	1014100	+		5320	18175	2628	2628	7465;7466	7465					0.01579207383178982
DFVSLWDLL	9	Unmodified	_DFVSLWDLL_					0	0	0			REV__ENSG00000182022|ENST00000435907|CHST15	REV__ENSG00000182022|ENST00000435907|CHST15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.279541015625	2	554.289682	1106.56481	0.70113	0.00038863	0.40426	0.00022408	1.1054	0.00061271	554.2895507764598	77.452	0.99171	77.42	77.1	78.092	-0.031334					107	35	4	0	0	0	0.21303	2	19965	19965;20004		21.747	5.8995	1	1036200	+		5321	18175	2628	2628	7467;7468	7467					0.01579207383178982
DFVYDFTFAK	10	Unmodified	_DFVYDFTFAK_					0	0	0			REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A	REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.200439453125	3	418.201007	1251.58119	-0.12	-5.0182E-05	-1.0943	-0.00045764	-1.2143	-0.00050782	418.20046360747284	26.729	0.50874	26.729	26.499	27.007	0					56	17	4	0	0	0	0.40106	1	4449	4449		1.5923	0	1	237970	+		5322	15964	2629	2629	7469	7469					-0.034537114507202205
DFWFLNNVG	9	Unmodified	_DFWFLNNVG_					0	0	0		ENSG00000157856|ENST00000288710|DRC1	ENSG00000157856|ENST00000288710|DRC1	ENSG00000157856|ENST00000288710|DRC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7798461914062	2	556.263999	1110.51345	0.29269	0.00016281	-0.57446	-0.00031955	-0.28177	-0.00015674	556.2634283415733	17.213	0.52856	17.213	16.895	17.424	0					26	16	2	0	0	0	0.25988	1	1484	1484		3.9444	0	1	44599			5323	5331	2630	2630	7470	7470					-0.03739116590895719
DFYGQCLHCF	10	Unmodified	_DFYGQCLHCF_					0	0	0			REV__ENSG00000176971|ENST00000318627|FIBIN	REV__ENSG00000176971|ENST00000318627|FIBIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.50048828125	3	411.500293	1231.47905	0.14122	5.8112E-05	0.044048	1.8126E-05	0.18527	7.6237E-05	411.5003599962199	56.552	0.7449	56.552	56.267	57.012	0					66	27	3	0	0	0	0.34887	1	13578	13578		12.873	0.69786	1	710230	+		5324	17963	2631	2631	7471	7471					-0.12743024065639474
DFYGQCLHCF	10	Unmodified	_DFYGQCLHCF_					0	0	0			REV__ENSG00000176971|ENST00000318627|FIBIN	REV__ENSG00000176971|ENST00000318627|FIBIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5003662109375	3	411.500293	1231.47905	0.67815	0.00027906	-0.71811	-0.0002955	-0.039964	-1.6445E-05	411.4999832215664	56.766	0.767	56.747	56.429	57.196	-0.019081					55	27	3	0	0	0	0.34887	1	13668	13668		12.873	2.0731	1	750880	+		5325	17963	2631	2631	7472	7472					-0.12743024065639474
DFYPGAVTV	9	Unmodified	_DFYPGAVTV_					0	0	0		nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5	nc|ENSG00000211679|P0DOY3|IGLC3	nc|ENSG00000211679|P0DOY3|IGLC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7400207519531	2	484.739825	967.465098	0.23414	0.00011349	0.43206	0.00020944	0.6662	0.00032293	484.73989382641014	67.744	0.98706	67.744	67.368	68.355	0					80	35	4	0	0	0	0.00056175	3	17038	16993;17038;17091		128.37	81.445	1	1705500			5326	12922	2632	2632	7473;7474;7475	7474					-0.019936102307724468
DFYPGAVTV	9	Unmodified	_DFYPGAVTV_					0	0	0		nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5	nc|ENSG00000211679|P0DOY3|IGLC3	nc|ENSG00000211679|P0DOY3|IGLC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.739990234375	2	484.739825	967.465098	0.3769	0.0001827	0.13044	6.3227E-05	0.50733	0.00024592	484.73979090189437	67.613	0.90215	67.691	67.434	68.336	0.078041					85	31	4	0	0	0	0.00094673	3	17004	16954;17004;17053		123.45	76.53	1	1420300			5327	12922	2632	2632	7476;7477;7478	7477					-0.019936102307724468
DFYPGAVTV	9	Unmodified	_DFYPGAVTV_					0	0	0		nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5	nc|ENSG00000211679|P0DOY3|IGLC3	nc|ENSG00000211679|P0DOY3|IGLC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7399597167969	2	484.739825	967.465098	0.22866	0.00011084	0.18189	8.817E-05	0.41055	0.00019901	484.739865756319	67.74	1.1661	67.724	67.06	68.226	-0.016296					87	40	4	0	0	0	0.00094673	3	17023	16976;17023;17083		123.45	85.299	1	1603800			5328	12922	2632	2632	7479;7480;7481	7480					-0.019936102307724468
DGAFGIRI	8	Unmodified	_DGAFGIRI_					0	0	0		nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.7348937988281	2	424.734877	847.455202	-0.27323	-0.00011605	-0.3419	-0.00014522	-0.61514	-0.00026127	424.73458362658386	59.621	0.7718	59.621	59.326	60.098	0					62	26	3	0	0	0	0.015567	3	14509	14509;14559;14591		108	50.526	1	1539800			5329	2161	2633	2633	7482;7483;7484	7482					0.025372465545160594
DGAFGIRI	8	Unmodified	_DGAFGIRI_					0	0	0		nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.73480224609375	2	424.734877	847.455202	-0.29467	-0.00012516	-0.36077	-0.00015323	-0.65544	-0.00027839	424.73453644116233	59.484	0.75256	59.579	59.266	60.019	0.095089					64	26	3	0	0	0	0.015567	2	14463	14463;14513		108	50.526	1	1417700			5330	2161	2633	2633	7485;7486	7485					0.025372465545160594
DGARLRRAF	9	Unmodified	_DGARLRRAF_					0	0	0			REV__ENSG00000139549|ENST00000649637|DHH	REV__ENSG00000139549|ENST00000649637|DHH	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3154296875	2	531.301781	1060.58901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.486	1	91.576	91.076	92.076	0.090668								0	0	0	0.25631	1	24285	24285		4.3292	0	1		+		5331	15990	2634	2634	7487	7487					0.06113905380084361
DGFAFQNLV	9	Unmodified	_DGFAFQNLV_					0	0	0		ENST00000478683.1_1_2:171902682-171910351:-|nuORF;nc|ENSG00000198586|Q9UKI8-3|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;nc|ENSG00000198586|Q9UKI8-5|TLK1;ENSG00000198586|ENST00000431350|TLK1;nc|ENSG00000198586|Q9UKI8-2|TLK1	ENST00000478683.1_1_2:171902682-171910351:-|nuORF	ENST00000478683.1_1_2:171902682-171910351:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7995300292969	2	505.750724	1009.4869	0.5663	0.00028641	-0.55533	-0.00028086	0.010979	5.5526E-06	505.75082558461435	84.292	0.43649	84.292	84.033	84.47	0					40	16	3	0	0	0	0.090256	1	22079	22079		57.722	29.235	1	378170			5332	8090	2635	2635	7488	7488					-0.017468054821847545
DGFAFQNLV	9	Unmodified	_DGFAFQNLV_					0	0	0		ENST00000478683.1_1_2:171902682-171910351:-|nuORF;nc|ENSG00000198586|Q9UKI8-3|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;nc|ENSG00000198586|Q9UKI8-5|TLK1;ENSG00000198586|ENST00000431350|TLK1;nc|ENSG00000198586|Q9UKI8-2|TLK1	ENST00000478683.1_1_2:171902682-171910351:-|nuORF	ENST00000478683.1_1_2:171902682-171910351:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7505798339844	2	505.750724	1009.4869	0.51319	0.00025955	-0.71915	-0.00036371	-0.20596	-0.00010416	505.75073293332395	84.203	0.44405	84.28	83.998	84.442	0.077095					38	17	3	0	0	0	0.0037772	1	22039	22039		96.111	42.535	1	299190			5333	8090	2635	2635	7489	7489					-0.017468054821847545
DGFAFQNLV	9	Unmodified	_DGFAFQNLV_					0	0	0		ENST00000478683.1_1_2:171902682-171910351:-|nuORF;nc|ENSG00000198586|Q9UKI8-3|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;nc|ENSG00000198586|Q9UKI8-5|TLK1;ENSG00000198586|ENST00000431350|TLK1;nc|ENSG00000198586|Q9UKI8-2|TLK1	ENST00000478683.1_1_2:171902682-171910351:-|nuORF	ENST00000478683.1_1_2:171902682-171910351:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.7996520996094	2	505.750724	1009.4869	0.5205	0.00026324	0.18053	9.1302E-05	0.70103	0.00035455	505.7508885582363	84.268	0.50096	84.251	84.03	84.531	-0.016823					49	20	4	0	0	0	0.016005	1	22062	22062		85.642	26.963	1	424980			5334	8090	2635	2635	7490	7490					-0.017468054821847545
DGFHIFIV	8	Unmodified	_DGFHIFIV_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2530212402344	2	474.252903	946.491253	0.49202	0.00023334	-0.53422	-0.00025336	-0.042201	-2.0014E-05	474.25275452257637	78.387	2.11	78.387	77.632	79.742	0					138	82	3	0	0	0	0.2705	1	20292	20292		34.187	14.748	1	804700			5335	5066	2636	2636	7491	7491					0.015867037313682886
DGFHIFIV	8	Unmodified	_DGFHIFIV_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.2528381347656	2	474.252903	946.491253	0.51738	0.00024537	-0.60261	-0.00028579	-0.08523	-4.042E-05	474.25268066164773	78.341	1.0722	78.399	77.795	78.867	0.058151					87	39	3	0	0	0	0.2705	1	20234	20234		34.187	13.316	1	817010			5336	5066	2636	2636	7492	7492					0.015867037313682886
DGFHIFIV	8	Unmodified	_DGFHIFIV_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.25274658203125	2	474.252903	946.491253	0.68926	0.00032688	-0.72674	-0.00034466	-0.037487	-1.7778E-05	474.2526498431098	78.404	1.0685	78.374	78.034	79.102	-0.030426					103	42	3	0	0	0	0.33916	1	20239	20239		26.341	6.9023	1	812270			5337	5066	2636	2636	7493	7493					0.015867037313682886
DGFISNLTI	9	Unmodified	_DGFISNLTI_					0	0	0		nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2576599121094	2	490.258382	978.502212	0.30439	0.00014923	-1.5972	-0.00078306	-1.2929	-0.00063383	490.257334751449	81.717	0.63892	81.717	81.28	81.919	0					64	27	3	0	0	0	0.0041491	2	21313	21313;21354		93.166	39.333	1	526220			5338	3077	2637	2637	7494;7495	7494					0.012100613149868877
DGFISNLTI	9	Unmodified	_DGFISNLTI_					0	0	0		nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.25762939453125	2	490.258382	978.502212	0.063971	3.1362E-05	-1.2828	-0.0006289	-1.2188	-0.00059754	490.2574402653857	81.606	0.66609	81.675	81.265	81.931	0.068993					63	31	3	0	0	0	0.0028542	1	21279	21279		103.42	40.847	1	442880			5339	3077	2637	2637	7496	7496					0.012100613149868877
DGFISNLTI	9	Unmodified	_DGFISNLTI_					0	0	0		nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	nc|ENSG00000122884|P13674-3|P4HA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2573547363281	2	490.258382	978.502212	0.34264	0.00016798	-1.3815	-0.00067728	-1.0388	-0.00050929	490.25734041434276	81.771	0.63781	81.747	81.294	81.932	-0.02404					60	27	3	0	0	0	0.0041491	3	21303	21258;21303;21344		93.166	39.333	1	475320			5340	3077	2637	2637	7497;7498;7499	7498					0.012100613149868877
DGFLFRYI	8	Unmodified	_DGFLFRYI_					0	0	0		ENSG00000183775|ENST00000512467|KCTD16;ENSG00000178695|ENST00000377474|KCTD12	ENSG00000183775|ENST00000512467|KCTD16	ENSG00000183775|ENST00000512467|KCTD16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.3106079101562	2	515.77146	1029.52837	0.75792	0.00039092	0.068551	3.5357E-05	0.82648	0.00042627	515.7713794806389	78.205	0.84879	78.205	77.979	78.828	0					71	31	3	0	0	0	0.069372	1	20212	20212		85.272	49.228	1	1202100			5341	7404	2638	2638	7500	7500					0.014783752771336367
DGFLFRYI	8	Unmodified	_DGFLFRYI_					0	0	0		ENSG00000183775|ENST00000512467|KCTD16;ENSG00000178695|ENST00000377474|KCTD12	ENSG00000183775|ENST00000512467|KCTD16	ENSG00000183775|ENST00000512467|KCTD16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.3106079101562	2	515.77146	1029.52837	0.56645	0.00029216	0.27875	0.00014377	0.84521	0.00043593	515.7713913669783	78.164	0.70393	78.222	77.979	78.683	0.058151					71	25	4	0	0	0	0.069372	1	20182	20182		65.235	29.191	1	1486400			5342	7404	2638	2638	7501	7501					0.014783752771336367
DGFLFRYI	8	Unmodified	_DGFLFRYI_					0	0	0		ENSG00000183775|ENST00000512467|KCTD16;ENSG00000178695|ENST00000377474|KCTD12	ENSG00000183775|ENST00000512467|KCTD16	ENSG00000183775|ENST00000512467|KCTD16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.310546875	2	515.77146	1029.52837	0.72137	0.00037206	-0.18332	-9.4551E-05	0.53805	0.00027751	515.7712526871713	78.266	0.98797	78.236	77.926	78.914	-0.030434					86	37	3	0	0	0	0.069372	1	20212	20212		85.272	49.228	1	1518300			5343	7404	2638	2638	7502	7502					0.014783752771336367
DGFSFEEI	8	Unmodified	_DGFSFEEI_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2057189941406	2	472.205815	942.397078	0.11118	5.25E-05	0.07926	3.7427E-05	0.19044	8.9927E-05	472.2056962104541	76.698	0.66459	76.698	76.396	77.06	0					53	24	4	0	0	0	0.023679	2	19779	19733;19779		97.075	50.154	1	474870			5344	4268	2639	2639	7503;7504	7504					-0.07642479881405961
DGFSFEEI	8	Unmodified	_DGFSFEEI_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.205810546875	2	472.205815	942.397078	0.020738	9.7925E-06	0.15816	7.4683E-05	0.1789	8.4476E-05	472.20576359912786	76.629	0.65955	76.682	76.398	77.058	0.053413					47	23	3	0	0	0	0.034972	2	19710	19710;19767		85.357	47.206	1	452170			5345	4268	2639	2639	7505;7506	7505					-0.07642479881405961
DGFSFEEI	8	Unmodified	_DGFSFEEI_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2057800292969	2	472.205815	942.397078	0.4143	0.00019563	-0.23233	-0.00010971	0.18197	8.5927E-05	472.20554991392163	76.729	0.59633	76.697	76.422	77.019	-0.031487					45	21	3	0	0	0	0.014355	1	19734	19734		109.63	62.708	1	411760			5346	4268	2639	2639	7507	7507					-0.07642479881405961
DGFTVPQI	8	Unmodified	_DGFTVPQI_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.7266845703125	2	438.726718	875.438883	0.1558	6.8352E-05	0.36516	0.0001602	0.52095	0.00022856	438.7266521462868	72.654	1.9207	72.654	71.521	73.441	0					153	69	4	0	0	0	0.029711	5	18532	18438;18484;18532;18573;18618		88.954	23.719	1	2305700			5347	2674	2640	2640	7508;7509;7510;7511;7512	7510					-0.003818794022322436
DGFTVPQI	8	Unmodified	_DGFTVPQI_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.7267150878906	2	438.726718	875.438883	0.16478	7.2292E-05	0.36287	0.0001592	0.52765	0.00023149	438.72661639905846	72.604	2.0301	72.658	71.865	73.895	0.053833					156	73	3	0	0	0	0.048928	3	18479	18479;18528;18582		78.728	22.551	1	2399400			5348	2674	2640	2640	7513;7514;7515	7513					-0.003818794022322436
DGFTVPQI	8	Unmodified	_DGFTVPQI_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.7266845703125	2	438.726718	875.438883	0.20387	8.9442E-05	0.27601	0.00012109	0.47988	0.00021053	438.7266031959273	72.689	1.8738	72.66	72.066	73.939	-0.029305					150	67	4	0	0	0	0.04227	4	18507	18460;18507;18548;18600		81.89	23.211	1	2635000			5349	2674	2640	2640	7516;7517;7518;7519	7517					-0.003818794022322436
DGFVPLAPI	9	Unmodified	_DGFVPLAPI_					0	0	0			REV__ENSG00000140057|ENST00000267584|AK7	REV__ENSG00000140057|ENST00000267584|AK7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7774658203125	2	464.760561	927.506569	-0.15021	-6.9811E-05	0.82117	0.00038165	0.67096	0.00031184	464.7608663125135	69.267	1.0233	69.267	68.872	69.895	0					77	36	3	0	0	0	0.28128	1	17535	17535		11.64	0	1	428410	+		5350	16019	2641	2641	7520	7520					0.03991570528569355
DGFVTPQI	8	Unmodified	_DGFVTPQI_					0	0	0			REV__nc|ENSG00000111275|P05091-2|ALDH2	REV__nc|ENSG00000111275|P05091-2|ALDH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.726806640625	2	438.726718	875.438883	0.16478	7.2292E-05	0.36287	0.0001592	0.52765	0.00023149	438.72661639905846	72.604	2.0301	72.658	71.865	73.895	0.053833					156	73	3	0	0	0	0.35947	1	18425	18425		24.021	0	1	2399400	+		5351	14715	2642	2642	7521	7521					-0.003818794022322436
DGGFVLKV	8	Unmodified	_DGGFVLKV_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.7395935058594	2	417.739628	833.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.893	1	55.893	55.393	56.393	0								0	0	0	2.6901E-09	1	13380	13380		141.83	88.251	1				5352	3128	2643	2643	7522	7522					0.04131014840049829
DGGFVLKV	8	Unmodified	_DGGFVLKV_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.7396240234375	2	417.739628	833.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.88	1	55.951	55.451	56.451	0.070885								0	0	0	9.7073E-06	1	13373	13373		133.7	80.126	1				5353	3128	2643	2643	7523	7523					0.04131014840049829
DGGFVLKV	8	Unmodified	_DGGFVLKV_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.7395935058594	2	417.739628	833.464704	0.60554	0.00025296	-0.41231	-0.00017224	0.19323	8.0719E-05	417.73940847777646	55.974	0.62111	55.955	55.646	56.267	-0.019081					51	22	3	0	0	0	0.0018053	1	13416	13416		133.7	80.126	1	3453500			5354	3128	2643	2643	7524	7524					0.04131014840049829
DGHAKQIQL	9	Unmodified	_DGHAKQIQL_					0	0	0			REV__ENSG00000064703|ENST00000369702|DDX20	REV__ENSG00000064703|ENST00000369702|DDX20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.27496337890625	2	505.274898	1008.53524	0.46723	0.00023608	-0.04285	-2.1651E-05	0.42438	0.00021443	505.27485354670796	44.456	0.8636	44.456	44.206	45.069	0					62	31	3	0	0	0	0.051692	1	9842	9842		52.268	0	1	1182400	+		5355	13648	2644	2644	7525	7525					0.03131688157714052
DGIIVNII	8	Unmodified	_DGIIVNII_					0	0	0		ENST00000518099.5_1_8:124085009-124113262:+|nuORF;TBC1D31|p.L549Sfs*13|1|0.09|ENSG00000156787|chr8:123126128-123126129|-/ATCCAATCTTTATGTTCTCAATATG|frameshift_variant;nc|ENSG00000156787|Q96DN5-3|TBC1D31;nc|ENSG00000156787|Q96DN5-2|TBC1D31;ENSG00000156787|ENST00000287380|TBC1D31	ENST00000518099.5_1_8:124085009-124113262:+|nuORF	ENST00000518099.5_1_8:124085009-124113262:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.7602844238281	2	428.760561	855.506569	0.12976	5.5635E-05	-0.20377	-8.7368E-05	-0.074011	-3.1733E-05	428.76040529383965	82.859	1.3247	82.859	82.534	83.859	0					118	49	4	0	0	0	0.0018053	4	21637	21627;21637;21678;21739		133.7	40.88	1	2096500			5356	5255	2645	2645	7526;7527;7528;7529	7527					0.07303570528563341
DGIIVNII	8	Unmodified	_DGIIVNII_					0	0	0		ENST00000518099.5_1_8:124085009-124113262:+|nuORF;TBC1D31|p.L549Sfs*13|1|0.09|ENSG00000156787|chr8:123126128-123126129|-/ATCCAATCTTTATGTTCTCAATATG|frameshift_variant;nc|ENSG00000156787|Q96DN5-3|TBC1D31;nc|ENSG00000156787|Q96DN5-2|TBC1D31;ENSG00000156787|ENST00000287380|TBC1D31	ENST00000518099.5_1_8:124085009-124113262:+|nuORF	ENST00000518099.5_1_8:124085009-124113262:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.7602233886719	2	428.760561	855.506569	0.05633	2.4152E-05	-0.079049	-3.3893E-05	-0.022719	-9.741E-06	428.76044788520664	82.82	1.1576	82.893	82.517	83.674	0.07309					113	43	4	0	0	0	0.0059495	3	21588	21588;21638;21686		125.62	36.198	1	2088000			5357	5255	2645	2645	7530;7531;7532	7530					0.07303570528563341
DGIIVNII	8	Unmodified	_DGIIVNII_					0	0	0		ENST00000518099.5_1_8:124085009-124113262:+|nuORF;TBC1D31|p.L549Sfs*13|1|0.09|ENSG00000156787|chr8:123126128-123126129|-/ATCCAATCTTTATGTTCTCAATATG|frameshift_variant;nc|ENSG00000156787|Q96DN5-3|TBC1D31;nc|ENSG00000156787|Q96DN5-2|TBC1D31;ENSG00000156787|ENST00000287380|TBC1D31	ENST00000518099.5_1_8:124085009-124113262:+|nuORF	ENST00000518099.5_1_8:124085009-124113262:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.76055908203125	2	428.760561	855.506569	0.10828	4.6428E-05	-0.11785	-5.0531E-05	-0.0095696	-4.1031E-06	428.7604331049339	82.954	1.1531	82.934	82.541	83.695	-0.020584					113	46	4	0	0	0	0.015567	3	21668	21623;21668;21716		108	26.384	1	2324600			5358	5255	2645	2645	7533;7534;7535	7534					0.07303570528563341
DGIKTTLV	8	Unmodified	_DGIKTTLV_					0	0	0		ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.24432373046875	2	423.750193	845.485833	-0.20763	-8.7984E-05	-0.047374	-2.0075E-05	-0.25501	-0.00010806	423.75007235452534	41.336	0.40731	41.336	41.096	41.504	0					24	14	2	0	0	0	0.3812	1	8901	8901		21.537	3.402	1	406970			5359	2981	2646	2646	7536	7536					0.05690980148892777
DGIKTTLV	8	Unmodified	_DGIKTTLV_					0	0	0		ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.2443542480469	2	423.750193	845.485833	-0.17508	-7.4189E-05	0.028885	1.224E-05	-0.14619	-6.1949E-05	423.75010848195694	41.218	0.46001	41.309	41.106	41.566	0.090252					23	16	2	0	0	0	0.3812	1	8884	8884		21.537	9.0054	1	562110			5360	2981	2646	2646	7537	7537					0.05690980148892777
DGIKTTLV	8	Unmodified	_DGIKTTLV_					0	0	0		ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.2444152832031	2	423.750193	845.485833	-0.088938	-3.7688E-05	-0.33855	-0.00014346	-0.42749	-0.00018115	423.74998846706035	41.288	0.40785	41.385	41.04	41.448	0.096622					24	14	2	0	0	0	0.41087	1	8853	8853		18.146	0.011366	1	560540			5361	2981	2646	2646	7538	7538					0.05690980148892777
DGIKVVKV	8	Unmodified	_DGIKVVKV_					0	0	0		nc|ENSG00000134291|Q9BVX2-2|TMEM106C;ENST00000547136.1_1_12:48359585-48360048:+|nuORF;ENST00000551305.5_1_12:48359585-48359975:+|nuORF;ENSG00000134291|ENST00000429772|TMEM106C	nc|ENSG00000134291|Q9BVX2-2|TMEM106C	nc|ENSG00000134291|Q9BVX2-2|TMEM106C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.9103698730469	2	429.276378	856.538203	-0.26012	-0.00011166	0.80882	0.00034721	0.54871	0.00023555	429.2765913268907	31.247	0.49376	31.247	31.033	31.526	0					30	17	3	0	0	0	0.33988	1	5822	5822		18.146	4.2403	1	207030			5362	12705	2647	2647	7539	7539					0.1041956328251672
DGIKVVKV	8	Unmodified	_DGIKVVKV_					0	0	0		nc|ENSG00000134291|Q9BVX2-2|TMEM106C;ENST00000547136.1_1_12:48359585-48360048:+|nuORF;ENST00000551305.5_1_12:48359585-48359975:+|nuORF;ENSG00000134291|ENST00000429772|TMEM106C	nc|ENSG00000134291|Q9BVX2-2|TMEM106C	nc|ENSG00000134291|Q9BVX2-2|TMEM106C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.91015625	2	429.276378	856.538203	-0.11313	-4.8562E-05	0.53406	0.00022926	0.42093	0.0001807	429.27650299787115	31.223	0.4041	31.264	31.042	31.447	0.040991					31	14	3	0	0	0	0.33988	1	5781	5781		18.146	4.2403	1	168580			5363	12705	2647	2647	7540	7540					0.1041956328251672
DGIRLNLI	8	Unmodified	_DGIRLNLI_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.27691650390625	2	457.276909	912.539266	0.2643	0.00012086	-0.51307	-0.00023462	-0.24877	-0.00011376	457.2766171090839	64.742	0.40556	64.835	64.633	65.038	0.09288					22	14	2	0	0	0	0.25352	1	16120	16120		36.127	2.0246	1	176600			5364	4266	2648	2648	7541	7541					0.07949777651424483
DGIRLNLI	8	Unmodified	_DGIRLNLI_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	457.276909	912.539266	0.12188	5.5732E-05	-0.12703	-5.8088E-05	-0.0051512	-2.3555E-06	457.27679388044754	64.86	0.42649	64.86	64.621	65.047	0	-0.0020932	0.00016906	NaN	36.127	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149920			5365	4266	2648	2648							0.07949777651424483
DGIRLNLI	8	Unmodified	_DGIRLNLI_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	457.276909	912.539266	0.11289	5.1623E-05	-0.19667	-8.9934E-05	-0.083779	-3.831E-05	457.27689076464816	64.903	0.41571	64.891	64.632	65.048	-0.011337	0.028962	0.00010537	NaN	36.127	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114840			5366	4266	2648	2648							0.07949777651424483
DGLAFNALI	9	Unmodified	_DGLAFNALI_					0	0	0		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2556457519531	2	467.255643	932.496732	0.18848	8.8069E-05	-0.15368	-7.1809E-05	0.0348	1.626E-05	467.25544275487346	87.081	0.79269	87.081	86.832	87.625	0					88	33	3	0	0	0	0.00070271	3	22973	22923;22973;23019		126.57	41.294	1	1669800			5367	7	2649	2649	7542;7543;7544	7543					0.027783825231949777
DGLAFNALI	9	Unmodified	_DGLAFNALI_					0	0	0		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2557678222656	2	467.255643	932.496732	0.11997	5.6056E-05	-0.066014	-3.0845E-05	0.053955	2.5211E-05	467.2554362663237	87.012	0.79227	87.099	86.783	87.576	0.08709					90	34	3	0	0	0	2.8439E-05	3	22922	22878;22922;22964		152.41	44.415	1	1515800			5368	7	2649	2649	7545;7546;7547	7546					0.027783825231949777
DGLAFNALI	9	Unmodified	_DGLAFNALI_					0	0	0		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2557678222656	2	467.255643	932.496732	0.33238	0.00015531	-0.12756	-5.9601E-05	0.20482	9.5705E-05	467.25540739183845	87.102	0.73471	87.097	86.846	87.581	-0.0056229					92	33	4	0	0	0	5.6213E-07	3	22951	22906;22951;22992		158.2	37.752	1	1537600			5369	7	2649	2649	7548;7549;7550	7549					0.027783825231949777
DGLLRVLTV	9	Unmodified	_DGLLRVLTV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.30584716796875	2	493.305667	984.596781	0.39807	0.00019637	-0.047121	-2.3245E-05	0.35095	0.00017312	493.3055859238044	70.196	0.81561	70.196	69.895	70.711	0					96	29	4	0	0	0	0.0016724	2	17799	17749;17799		114.19	58.009	1	3304300			5370	5916	2650	2650	7551;7552	7552					0.10386619856990364
DGLLRVLTV	9	Unmodified	_DGLLRVLTV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.3056945800781	2	493.305667	984.596781	0.37585	0.00018541	-0.063087	-3.1121E-05	0.31277	0.00015429	493.305584348952	70.148	0.80991	70.214	69.939	70.749	0.06604					97	28	4	0	0	0	0.0028032	2	17733	17733;17784		103.82	48.321	1	3107300			5371	5916	2650	2650	7553;7554	7553					0.10386619856990364
DGLLRVLTV	9	Unmodified	_DGLLRVLTV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.3056640625	2	493.305667	984.596781	0.38109	0.000188	-0.022546	-1.1122E-05	0.35855	0.00017687	493.30559582384626	70.213	0.97765	70.191	69.937	70.915	-0.022087					105	34	4	0	0	0	0.0016724	2	17750	17750;17802		114.19	56.464	1	2660400			5372	5916	2650	2650	7555;7556	7555					0.10386619856990364
DGLTALHV	8	Unmodified	_DGLTALHV_					0	0	0		ENSG00000069399|ENST00000164227|BCL3;ENST00000403534.7_1_19:45250964-45261799:+|nuORF	ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.78375244140625	2	413.226885	824.439217	0.37225	0.00015382	-0.38098	-0.00015743	-0.0087346	-3.6094E-06	413.22663145662005	50.548	0.62629	50.548	50.296	50.922	0					37	22	2	0	0	0	0.057136	1	11725	11725		89.427	29.632	1	481250			5373	905	2651	2651	7557	7557					0.019975403176090367
DGLTALHV	8	Unmodified	_DGLTALHV_					0	0	0		ENSG00000069399|ENST00000164227|BCL3;ENST00000403534.7_1_19:45250964-45261799:+|nuORF	ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.7838439941406	2	413.226885	824.439217	0.86178	0.00035611	-0.81275	-0.00033585	0.049037	2.0264E-05	413.2264679401261	50.53	0.66343	50.575	50.292	50.956	0.044888					46	23	3	0	0	0	0.097623	1	11717	11717		77.984	37.536	1	486760			5374	905	2651	2651	7558	7558					0.019975403176090367
DGLTALHV	8	Unmodified	_DGLTALHV_					0	0	0		ENSG00000069399|ENST00000164227|BCL3;ENST00000403534.7_1_19:45250964-45261799:+|nuORF	ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.7839050292969	2	413.226885	824.439217	0.84657	0.00034982	-0.85285	-0.00035242	-0.0062818	-2.5958E-06	413.2264446496874	50.554	0.61525	50.574	50.309	50.924	0.020691					37	22	2	0	0	0	0.16018	1	11706	11706		67.344	26.895	1	446120			5375	905	2651	2651	7559	7559					0.019975403176090367
DGLTVHLV	8	Unmodified	_DGLTVHLV_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;ENSG00000188021|ENST00000338222|UBQLN2;ENST00000472638.1_1_1:156020124-156021603:-|nuORF;nc|ENSG00000135018|Q9UMX0-4|UBQLN1;nc|ENSG00000160803|Q9NRR5-2|UBQLN4;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4;ENSG00000175520|ENST00000311659|UBQLN3	nc|ENSG00000135018|Q9UMX0-2|UBQLN1;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000175520|ENST00000311659|UBQLN3	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.77630615234375	2	427.242535	852.470518	0.18606	7.9491E-05	-0.29689	-0.00012684	-0.11083	-4.7353E-05	427.2423831326448	54.142	0.43759	54.142	53.884	54.322	0					24	15	2	0	0	0	0.13693	1	12828	12828		70.716	27.748	1	256270			5376	3838;5491;6872	2652	2652	7560	7560					0.038381133517077615
DGLTVHLV	8	Unmodified	_DGLTVHLV_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;ENSG00000188021|ENST00000338222|UBQLN2;ENST00000472638.1_1_1:156020124-156021603:-|nuORF;nc|ENSG00000135018|Q9UMX0-4|UBQLN1;nc|ENSG00000160803|Q9NRR5-2|UBQLN4;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4;ENSG00000175520|ENST00000311659|UBQLN3	nc|ENSG00000135018|Q9UMX0-2|UBQLN1;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000175520|ENST00000311659|UBQLN3	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.77642822265625	2	427.242535	852.470518	0.072397	3.0931E-05	2.3444	0.0010016	2.4168	0.0010326	427.2438759670275	54.069	0.70666	54.132	53.96	54.667	0.063202					36	26	2	0	0	0	0.24743	1	12794	12794		50.855	7.887	1	287570			5377	3838;5491;6872	2652	2652	7561	7561					0.038381133517077615
DGLTVHLV	8	Unmodified	_DGLTVHLV_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;ENSG00000188021|ENST00000338222|UBQLN2;ENST00000472638.1_1_1:156020124-156021603:-|nuORF;nc|ENSG00000135018|Q9UMX0-4|UBQLN1;nc|ENSG00000160803|Q9NRR5-2|UBQLN4;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4;ENSG00000175520|ENST00000311659|UBQLN3	nc|ENSG00000135018|Q9UMX0-2|UBQLN1;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000175520|ENST00000311659|UBQLN3	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.7765808105469	2	427.242535	852.470518	0.11725	5.0094E-05	-0.060296	-2.5761E-05	0.056954	2.4333E-05	427.2423859493542	54.195	0.38597	54.179	53.949	54.335	-0.015923					24	13	2	0	0	0	0.23297	1	12829	12829		44.407	7.9409	1	335990			5378	3838;5491;6872	2652	2652	7562	7562					0.038381133517077615
DGLTVHLVI	9	Unmodified	_DGLTVHLVI_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;ENSG00000188021|ENST00000338222|UBQLN2;ENST00000472638.1_1_1:156020124-156021603:-|nuORF;nc|ENSG00000135018|Q9UMX0-4|UBQLN1;nc|ENSG00000160803|Q9NRR5-2|UBQLN4;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4;ENSG00000175520|ENST00000311659|UBQLN3	nc|ENSG00000135018|Q9UMX0-2|UBQLN1;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000175520|ENST00000311659|UBQLN3	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.78472900390625	2	483.784567	965.554582	0.28646	0.00013859	0.12633	6.1115E-05	0.41279	0.0001997	483.7846057834467	68.848	1.5628	68.848	68.541	70.103	0					131	56	4	0	0	0	0.0041925	2	17380	17328;17380		92.822	28.586	1	7089600			5379	3838;5491;6872	2653	2653	7563;7564	7564					0.07042644448608826
DGLTVHLVI	9	Unmodified	_DGLTVHLVI_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;ENSG00000188021|ENST00000338222|UBQLN2;ENST00000472638.1_1_1:156020124-156021603:-|nuORF;nc|ENSG00000135018|Q9UMX0-4|UBQLN1;nc|ENSG00000160803|Q9NRR5-2|UBQLN4;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4;ENSG00000175520|ENST00000311659|UBQLN3	nc|ENSG00000135018|Q9UMX0-2|UBQLN1;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000175520|ENST00000311659|UBQLN3	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7847595214844	2	483.784567	965.554582	0.3194	0.00015452	0.15696	7.5936E-05	0.47636	0.00023046	483.7845803037881	68.815	1.0782	68.887	68.536	69.615	0.071938					114	38	5	0	0	0	0.00268	3	17339	17339;17384;17436		104.8	30.376	1	6049500			5380	3838;5491;6872	2653	2653	7565;7566;7567	7565					0.07042644448608826
DGLTVHLVI	9	Unmodified	_DGLTVHLVI_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;ENSG00000188021|ENST00000338222|UBQLN2;ENST00000472638.1_1_1:156020124-156021603:-|nuORF;nc|ENSG00000135018|Q9UMX0-4|UBQLN1;nc|ENSG00000160803|Q9NRR5-2|UBQLN4;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4;ENSG00000175520|ENST00000311659|UBQLN3	nc|ENSG00000135018|Q9UMX0-2|UBQLN1;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000175520|ENST00000311659|UBQLN3	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.78466796875	2	483.784567	965.554582	0.30298	0.00014657	0.12246	5.9246E-05	0.42544	0.00020582	483.78454221818066	68.868	1.1038	68.848	68.572	69.676	-0.01915					106	39	5	0	0	0	0.0085732	2	17374	17329;17374		81.613	26.84	1	3866400			5381	3838;5491;6872	2653	2653	7568;7569	7569					0.07042644448608826
DGLVIPLV	8	Unmodified	_DGLVIPLV_					0	0	0		nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	nc|ENSG00000214655|A7E2V4-5|ZSWIM8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2585144042969	2	413.257654	824.500755	0.28303	0.00011696	0.51417	0.00021249	0.7972	0.00032945	413.25793902013396	88.345	0.73724	88.342	88.062	88.799	-0.0028458					79	34	3	0	0	0	0.23581	1	23376	23376		38.151	0	1	816640			5382	8387	2654	2654	7570	7570					0.08148472016910091
DGLVLVKV	8	Unmodified	_DGLVLVKV_					0	0	0			REV__RABL3|p.D5G|1|0.5|ENSG00000144840|chr3:120742494-120742494|T/C|missense_variant	REV__RABL3|p.D5G|1|0.5|ENSG00000144840|chr3:120742494-120742494|T/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.77093505859375	2	421.770929	841.527304	0.25298	0.0001067	-0.14288	-6.0262E-05	0.1101	4.6437E-05	421.7707660396958	54.448	0.72927	54.448	54.188	54.917	0					65	26	3	0	0	0	0.035151	1	12942	12942		85.272	0	1	3185300	+		5383	16265	2655	2655	7571	7571					0.1002016090824327
DGLVLVKV	8	Unmodified	_DGLVLVKV_					0	0	0			REV__RABL3|p.D5G|1|0.5|ENSG00000144840|chr3:120742494-120742494|T/C|missense_variant	REV__RABL3|p.D5G|1|0.5|ENSG00000144840|chr3:120742494-120742494|T/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.22900390625	2	421.770929	841.527304	0.25298	0.0001067	-0.14288	-6.0262E-05	0.1101	4.6437E-05	421.7707660396958	54.448	0.72927	54.448	54.188	54.917	0					65	26	3	0	0	0	0.069372	1	12907	12907		74.929	0	1	3185300	+		5384	16265	2655	2655	7572	7572					0.1002016090824327
DGLVLVKV	8	Unmodified	_DGLVLVKV_					0	0	0			REV__RABL3|p.D5G|1|0.5|ENSG00000144840|chr3:120742494-120742494|T/C|missense_variant	REV__RABL3|p.D5G|1|0.5|ENSG00000144840|chr3:120742494-120742494|T/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.77081298828125	2	421.770929	841.527304	0.27328	0.00011526	-0.16007	-6.7511E-05	0.11322	4.7751E-05	421.77074582754005	54.468	0.67183	54.531	54.218	54.89	0.063202					71	24	4	0	0	0	0.056926	2	12915	12915;12962		74.929	0	1	3344300	+		5385	16265	2655	2655	7573;7574	7573					0.1002016090824327
DGLVLVKV	8	Unmodified	_DGLVLVKV_					0	0	0			REV__RABL3|p.D5G|1|0.5|ENSG00000144840|chr3:120742494-120742494|T/C|missense_variant	REV__RABL3|p.D5G|1|0.5|ENSG00000144840|chr3:120742494-120742494|T/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7709045410156	2	421.770929	841.527304	0.26848	0.00011324	-0.074647	-3.1484E-05	0.19383	8.1753E-05	421.7708147947355	54.486	0.75454	54.47	54.17	54.924	-0.015919					66	26	3	0	0	0	0.077335	1	12958	12958		65.235	0	1	3690400	+		5386	16265	2655	2655	7575	7575					0.1002016090824327
DGLVLVKV	8	Unmodified	_DGLVLVKV_					0	0	0			REV__RABL3|p.D5G|1|0.5|ENSG00000144840|chr3:120742494-120742494|T/C|missense_variant	REV__RABL3|p.D5G|1|0.5|ENSG00000144840|chr3:120742494-120742494|T/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2290954589844	2	421.770929	841.527304	0.26848	0.00011324	-0.074647	-3.1484E-05	0.19383	8.1753E-05	421.7708147947355	54.486	0.75454	54.47	54.17	54.924	-0.015919					66	26	3	0	0	0	0.25582	1	12891	12891		41.84	0	1	3690400	+		5387	16265	2655	2655	7576	7576					0.1002016090824327
DGLVVLKI	8	Unmodified	_DGLVVLKI_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;ENST00000518034.5_1_8:117671049-117768048:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.7786865234375	2	428.778754	855.542954	0.077317	3.3152E-05	-0.0032755	-1.4045E-06	0.074042	3.1747E-05	428.7786718315477	65.607	1.2522	65.607	65.293	66.545	0					108	44	4	0	0	0	0.0086055	3	16380	16338;16380;16433		120.45	0	1	3866000			5388	4780	2656	2656	7577;7578;7579	7578					0.1094044742526421
DGLVVLKI	8	Unmodified	_DGLVVLKI_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;ENST00000518034.5_1_8:117671049-117768048:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.7787170410156	2	428.778754	855.542954	-0.18164	-7.7885E-05	0.28456	0.00012202	0.10292	4.413E-05	428.77879097327525	65.495	1.0367	65.584	65.295	66.332	0.088875					95	37	4	0	0	0	0.0086055	3	16346	16298;16346;16391		120.45	0	1	3663700			5389	4780	2656	2656	7580;7581;7582	7581					0.1094044742526421
DGLVVLKI	8	Unmodified	_DGLVVLKI_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;ENST00000518034.5_1_8:117671049-117768048:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.7787170410156	2	428.778754	855.542954	0.076644	3.2863E-05	-0.0074973	-3.2147E-06	0.069147	2.9649E-05	428.77867985223725	65.606	1.174	65.595	65.288	66.462	-0.011337					106	42	4	0	0	0	0.0086055	3	16377	16330;16377;16424		120.45	0	1	3856100			5390	4780	2656	2656	7583;7584;7585	7584					0.1094044742526421
DGMAFNALI	9	Oxidation (M)	_DGM(Oxidation (M))AFNALI_		DGM(1)AFNALI		DGM(110)AFNALI	0	0	1		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.E1055Gfs*20|1|0.19|ENSG00000115306|chr2:54631208-54631224|GAGAGGCCTCCCTGGGA/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2313232421875	2	484.23131	966.448068	0.25092	0.0001215	0.20153	9.7587E-05	0.45245	0.00021909	484.23125450074275	71.077	0.89892	71.077	70.683	71.582	0					71	31	3	0	0	0	0.0018995	1	18035	18035		111.29	40.153	1	2007400			5391	2631	2657	2657	7586	7586		327			-0.03649854108209638
DGMAFNALI	9	Oxidation (M)	_DGM(Oxidation (M))AFNALI_		DGM(1)AFNALI		DGM(100)AFNALI	0	0	1		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.E1055Gfs*20|1|0.19|ENSG00000115306|chr2:54631208-54631224|GAGAGGCCTCCCTGGGA/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2314147949219	2	484.23131	966.448068	0.23464	0.00011362	0.28945	0.00014016	0.52409	0.00025378	484.2312972865969	71.051	1.0428	71.111	70.744	71.787	0.060783					75	37	3	0	0	0	0.0033114	1	18019	18019		99.799	28.665	1	1905200			5392	2631	2657	2657	7587	7587		327			-0.03649854108209638
DGMAFNALI	9	Oxidation (M)	_DGM(Oxidation (M))AFNALI_		DGM(1)AFNALI		DGM(120)AFNALI	0	0	1		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.E1055Gfs*20|1|0.19|ENSG00000115306|chr2:54631208-54631224|GAGAGGCCTCCCTGGGA/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.2313537597656	2	484.23131	966.448068	0.37675	0.00018243	-3.1627E-05	-1.5315E-08	0.37672	0.00018242	484.2312120114876	71.151	0.82194	71.126	70.718	71.54	-0.024872					71	29	3	0	0	0	0.00094673	2	18040	18040;18085		123.45	52.317	1	2177000			5393	2631	2657	2657	7588;7589	7588		327			-0.03649854108209638
DGMHPQFEF	9	Unmodified	_DGMHPQFEF_					0	0	0			REV__ENST00000483628.1_1:206566231-206579954:+|nuORF	REV__ENST00000483628.1_1:206566231-206579954:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8303833007812	2	554.231842	1106.44913	0.21762	0.00012061	0.73994	0.0004101	0.95756	0.00053071	554.2322310369757	76.295	0.95467	76.295	75.976	76.931	0					73	34	3	0	0	0	0.25706	1	19827	19827		6.7232	1.4925	1	677600	+		5394	17681	2658	2658	7590	7590					-0.09983639739311911
DGMLFTATV	9	Oxidation (M)	_DGM(Oxidation (M))LFTATV_		DGM(1)LFTATV		DGM(96)LFTATV	0	0	1		ENSG00000167680|ENST00000586582|SEMA6B;nc|ENSG00000167680|Q9H3T3-3|SEMA6B	ENSG00000167680|ENST00000586582|SEMA6B	ENSG00000167680|ENST00000586582|SEMA6B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8000183105469	2	485.731143	969.447733	0.486	0.00023607	-0.3285	-0.00015956	0.1575	7.6504E-05	485.7309793826299	64.15	0.65331	64.15	63.859	64.513	0					43	23	2	0	0	0	0.0063774	1	15975	15975		96.285	47.939	1	233430			5395	6198	2659	2659	7591	7591		731			-0.038212738280549274
DGMLFTATV	9	Oxidation (M)	_DGM(Oxidation (M))LFTATV_		DGM(1)LFTATV		DGM(75)LFTATV	0	0	1		ENSG00000167680|ENST00000586582|SEMA6B;nc|ENSG00000167680|Q9H3T3-3|SEMA6B	ENSG00000167680|ENST00000586582|SEMA6B	ENSG00000167680|ENST00000586582|SEMA6B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001708984375	2	485.731143	969.447733	0.39723	0.00019295	-0.0524	-2.5452E-05	0.34483	0.0001675	485.7310101229009	64.064	0.7859	64.157	63.822	64.608	0.09288					48	28	2	0	0	0	0.040595	1	15942	15942		74.929	48.045	1	324410			5396	6198	2659	2659	7592	7592		731			-0.038212738280549274
DGMLFTATV	9	Oxidation (M)	_DGM(Oxidation (M))LFTATV_		DGM(1)LFTATV		DGM(96)LFTATV	0	0	1		ENSG00000167680|ENST00000586582|SEMA6B;nc|ENSG00000167680|Q9H3T3-3|SEMA6B	ENSG00000167680|ENST00000586582|SEMA6B	ENSG00000167680|ENST00000586582|SEMA6B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80010986328125	2	485.731143	969.447733	0.51255	0.00024896	-0.15663	-7.608E-05	0.35592	0.00017288	485.7309871847636	64.202	0.7829	64.192	63.851	64.634	-0.0095291					48	28	2	0	0	0	0.0063774	1	15931	15931		96.285	54.19	1	244110			5397	6198	2659	2659	7593	7593		731			-0.038212738280549274
DGMVGLII	8	Oxidation (M)	_DGM(Oxidation (M))VGLII_		DGM(1)VGLII		DGM(50)VGLII	0	0	1		nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.22528076171875	2	417.225497	832.43644	-0.014813	-6.1802E-06	-0.35925	-0.00014989	-0.37407	-0.00015607	417.2252460194806	70.984	0.75241	70.984	70.54	71.292	0					45	26	2	0	0	0	0.16192	1	17972	17972		49.669	6.7009	1	1045800			5398	1318	2660	2660	7594	7594		164			0.013519488684664793
DGMVGLII	8	Oxidation (M)	_DGM(Oxidation (M))VGLII_		DGM(1)VGLII		DGM(60)VGLII	0	0	1		nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.225341796875	2	417.225497	832.43644	0.25999	0.00010847	-0.50879	-0.00021228	-0.2488	-0.00010381	417.22513118127034	70.968	0.85069	70.943	70.549	71.399	-0.024872					46	30	2	0	0	0	0.19042	1	18022	18022		59.795	16.827	1	821280			5399	1318	2660	2660	7595	7595		164			0.013519488684664793
DGPFTIFV	8	Unmodified	_DGPFTIFV_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.6082458496094	2	448.231636	894.448719	0.29336	0.00013149	0.26829	0.00012026	0.56165	0.00025175	448.23175495964466	90.09	0.55685	90.09	89.776	90.332	0					62	47	2	0	0	0	0.31934	1	23860	23860		24.674	5.2349	1	82255			5400	423	2661	2661	7596	7596					-0.002726913968444933
DGPFTIFV	8	Unmodified	_DGPFTIFV_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.6082763671875	2	448.231636	894.448719	0.23088	0.00010349	1.5391	0.00068988	1.77	0.00079337	448.2318271065516	89.954	0.70885	90.044	89.648	90.357	0.090668					120	53	3	0	0	0	0.29855	1	23800	23800		32.117	5.7757	1	129810			5401	423	2661	2661	7597	7597					-0.002726913968444933
DGPHVKPTV	9	Unmodified	_DGPHVKPTV_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.3007507324219	2	475.258717	948.50288	0.22788	0.0001083	-0.4027	-0.00019139	-0.17482	-8.3084E-05	475.258491563742	33.189	0.64002	33.244	32.973	33.613	0.055313					44	22	3	0	0	0	0.24289	1	6359	6359		13.042	0	1	264530	+		5402	16569	2662	2662	7598	7598					0.02656900754709568
DGPRASLV	8	Unmodified	_DGPRASLV_					0	0	0		ENSG00000184731|ENST00000327669|FAM110C	ENSG00000184731|ENST00000327669|FAM110C	ENSG00000184731|ENST00000327669|FAM110C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.724609375	2	407.72451	813.434466	-0.14103	-5.7502E-05	0.35811	0.00014601	0.21707	8.8506E-05	407.72450972797014	31.528	0.61392	31.57	31.268	31.882	0.042364					46	21	3	0	0	0	0.074763	1	5892	5892		66.457	20.436	1	1746200			5403	7470	2663	2663	7599	7599					0.02028656174866228
DGPRVFRV	8	Unmodified	_DGPRVFRV_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA;nc|ENSG00000179115|Q9Y285-2|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.2665100097656	2	473.266876	944.519199	-0.67801	-0.00032088	0.089823	4.251E-05	-0.58818	-0.00027837	473.2668893985321	35.184	1.1692	35.184	34.868	36.037	0					122	42	4	0	0	0	0.079438	3	7020	6974;7020;7067		64.236	34.012	1	5518600			5404	7103	2664	2664	7600;7601;7602	7601					0.04472026711471244
DGPRVFRV	8	Unmodified	_DGPRVFRV_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA;nc|ENSG00000179115|Q9Y285-2|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.266357421875	2	473.266876	944.519199	-0.60908	-0.00028826	-0.10368	-4.9066E-05	-0.71275	-0.00033732	473.2668123028704	35.12	1.1297	35.196	34.843	35.973	0.075306					116	40	5	0	0	0	0.071344	3	6991	6946;6991;7034		68.081	37.856	1	6331800			5405	7103	2664	2664	7603;7604;7605	7604					0.04472026711471244
DGPRVFRV	8	Unmodified	_DGPRVFRV_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA;nc|ENSG00000179115|Q9Y285-2|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.26654052734375	2	473.266876	944.519199	-0.68672	-0.000325	0.13987	6.6197E-05	-0.54685	-0.0002588	473.2669146202625	35.06	1.083	35.137	34.866	35.949	0.077377					120	38	4	0	0	0	0.16041	3	6979	6932;6979;7024		49.933	26.785	1	5946600			5406	7103	2664	2664	7606;7607;7608	7607					0.04472026711471244
DGPSHYGGSTF	11	Unmodified	_DGPSHYGGSTF_					0	0	0			REV__ENSG00000197978|ENST00000618348|GOLGA6L9	REV__ENSG00000197978|ENST00000618348|GOLGA6L9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.7362060546875	2	562.735803	1123.45705	0.25676	0.00014449	0.7207	0.00040556	0.97746	0.00055005	562.736242159589	75.863	0.69369	75.832	75.496	76.189	-0.031487					112	24	6	0	0	0	0.39234	1	19554	19554		12.241	0	1	3176400	+		5407	18785	2665	2665	7609	7609					-0.09973789218179263
DGPVPGYL	8	Unmodified	_DGPVPGYL_					0	0	0		ENST00000483574.6_1_1:153748462-153750656:+|nuORF;ENST00000484014.5_1_1:153748462-153751189:+|nuORF;nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3;ENST00000468403.1_1_1:153748971-153749722:+|nuORF;ENST00000461269.1_1_1:153749094-153750403:+|nuORF	ENST00000483574.6_1_1:153748462-153750656:+|nuORF	ENST00000483574.6_1_1:153748462-153750656:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2177429199219	2	409.208161	816.401769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.364	1	27.364	26.864	27.864	0								0	0	0	0.35985	1	4633	4633		10.183	0.83596	1				5408	4530	2666	2666	7610	7610					-0.013775509480069559
DGRFSPLYKQ	10	Unmodified	_DGRFSPLYKQ_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.56689453125	3	404.212017	1209.61422	-0.41193	-0.00016651	-1.2638	-0.00051085	-1.6757	-0.00067736	404.21153990786433	15.158	1.1101	15.094	14.589	15.7	-0.064413					42	37	2	0	0	0	0.32148	1	904	904		1.4551	0.38366	1	51899			5409	4756	2667	2667	7611	7611					0.01779915392012299
DGRIFGESI	9	Unmodified	_DGRIFGESI_					0	0	0		nc|ENSG00000163002|Q8NFH5-3|NUP35;nc|ENSG00000163002|Q8NFH5-2|NUP35;ENSG00000163002|ENST00000295119|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.25469970703125	2	497.253631	992.49271	0.46025	0.00022886	0.74152	0.00036872	1.2018	0.00059758	497.25394307387126	52.735	0.62286	52.735	52.55	53.173	0					53	22	5	0	0	0	0.038291	3	12398	12390;12398;12459		57.249	19.275	1	1772300			5410	5640	2668	2668	7612;7613;7614	7613					-0.003837069705241447
DGRIFGESI	9	Unmodified	_DGRIFGESI_					0	0	0		nc|ENSG00000163002|Q8NFH5-3|NUP35;nc|ENSG00000163002|Q8NFH5-2|NUP35;ENSG00000163002|ENST00000295119|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.25469970703125	2	497.253631	992.49271	0.57535	0.0002861	0.68049	0.00033837	1.2558	0.00062447	497.25384096867526	52.649	0.5722	52.7	52.465	53.037	0.050575					51	20	3	0	0	0	0.053988	3	12380	12368;12380;12429		51.415	21.898	1	1637700			5411	5640	2668	2668	7615;7616;7617	7616					-0.003837069705241447
DGRIFGESI	9	Unmodified	_DGRIFGESI_					0	0	0		nc|ENSG00000163002|Q8NFH5-3|NUP35;nc|ENSG00000163002|Q8NFH5-2|NUP35;ENSG00000163002|ENST00000295119|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.25445556640625	2	497.253631	992.49271	0.35613	0.00017709	0.48455	0.00024094	0.84068	0.00041803	497.2538372366338	52.891	0.87649	52.882	52.631	53.507	-0.0096054					70	32	5	0	0	0	0.032589	2	12430	12430;12477		59.368	21.394	1	1842000			5412	5640	2668	2668	7618;7619	7618					-0.003837069705241447
DGRISVYSI	9	Unmodified	_DGRISVYSI_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.26947021484375	2	505.269281	1008.52401	0.18659	9.428E-05	-0.77795	-0.00039307	-0.59136	-0.0002988	505.26902650362706	51.778	0.59084	51.787	51.561	52.151	0.0095634					39	21	2	0	0	0	0.013404	1	12145	12145		74.2	18.697	1	2749900			5413	4177	2669	2669	7620	7620					0.02008866063579262
DGRISVYSI	9	Unmodified	_DGRISVYSI_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	505.269281	1008.52401	0.33718	0.00017037	-1.1356	-0.00057376	-0.79837	-0.00040339	505.2688217784852	51.69	0.5682	51.69	51.481	52.049	0	-0.033706	-6.7654E-05	NaN	74.2	39	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2676000			5414	4177	2669	2669							0.02008866063579262
DGRISVYSI	9	Unmodified	_DGRISVYSI_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	505.269281	1008.52401	0.31345	0.00015838	-1.2119	-0.00061232	-0.89842	-0.00045394	505.2686773690471	51.648	0.57859	51.695	51.504	52.082	0.046574	-0.029246	-0.00014477	NaN	74.2	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2614000			5415	4177	2669	2669							0.02008866063579262
DGRVQPFQQSQ	11	Unmodified	_DGRVQPFQQSQ_					0	0	0		ENST00000511489.1_1_5:127701040-127712520:-|nuORF	ENST00000511489.1_1_5:127701040-127712520:-|nuORF	ENST00000511489.1_1_5:127701040-127712520:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	645.3290405273438	2	645.315283	1288.61601	0.054168	3.4955E-05	0.3725	0.00024038	0.42666	0.00027533	645.3155415024455	35.405	0.18986	35.405	35.302	35.492	0					9	6	2	0	0	0	0.2981	1	7074	7074		27.223	15.729	1	112500			5416	11386	2670	2670	7621	7621					-0.016750755900375225
DGRVQPFQQSQ	11	Unmodified	_DGRVQPFQQSQ_					0	0	0		ENST00000511489.1_1_5:127701040-127712520:-|nuORF	ENST00000511489.1_1_5:127701040-127712520:-|nuORF	ENST00000511489.1_1_5:127701040-127712520:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	645.315283	1288.61601	0.14753	9.5203E-05	0.8451	0.00054536	0.99263	0.00064056	645.3160327297762	35.381	0.16317	35.457	35.346	35.509	0.075306	0.025958	0.00043595	NaN	21.59	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204430			5417	11386	2670	2670							-0.016750755900375225
DGRVSENTV	9	Unmodified	_DGRVSENTV_					0	0	0		nc|ENSG00000196182|Q8N2I9-2|STK40;nc|ENSG00000196182|Q8N2I9-3|STK40;ENSG00000196182|ENST00000373132|STK40;nc|ENSG00000196182|Q8N2I9-4|STK40	nc|ENSG00000196182|Q8N2I9-2|STK40	nc|ENSG00000196182|Q8N2I9-2|STK40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7380065917969	2	488.738345	975.462138	0.60069	0.00029358	-1.1508	-0.00056244	-0.55012	-0.00026886	488.7377281594083	20.926	0.56987	20.816	20.581	21.15	-0.11003					48	19	3	0	0	0	0.2869	1	2712	2712		10.8	3.5103	1	137570			5418	7832	2671	2671	7622	7622					-0.02657485355564404
DGRVSENTV	9	Unmodified	_DGRVSENTV_					0	0	0		nc|ENSG00000196182|Q8N2I9-2|STK40;nc|ENSG00000196182|Q8N2I9-3|STK40;ENSG00000196182|ENST00000373132|STK40;nc|ENSG00000196182|Q8N2I9-4|STK40	nc|ENSG00000196182|Q8N2I9-2|STK40	nc|ENSG00000196182|Q8N2I9-2|STK40	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	488.738345	975.462138	0.41034	0.00020055	-0.85717	-0.00041893	-0.44682	-0.00021838	488.7378767711282	20.707	0.65722	20.707	20.423	21.08	0	-0.036259	0.00018758	NaN	10.8	59	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100440			5419	7832	2671	2671							-0.02657485355564404
DGRVSENTV	9	Unmodified	_DGRVSENTV_					0	0	0		nc|ENSG00000196182|Q8N2I9-2|STK40;nc|ENSG00000196182|Q8N2I9-3|STK40;ENSG00000196182|ENST00000373132|STK40;nc|ENSG00000196182|Q8N2I9-4|STK40	nc|ENSG00000196182|Q8N2I9-2|STK40	nc|ENSG00000196182|Q8N2I9-2|STK40	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	488.738345	975.462138	0.53041	0.00025923	-1.2147	-0.00059368	-0.68432	-0.00033445	488.7377476452253	20.76	0.67499	20.707	20.387	21.062	-0.05291	-0.036364	-0.00016193	NaN	10.8	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167520			5420	7832	2671	2671							-0.02657485355564404
DGVTMQVTV	9	Oxidation (M)	_DGVTM(Oxidation (M))QVTV_		DGVTM(1)QVTV		DGVTM(100)QVTV	0	0	1		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2341003417969	2	483.23405	964.453547	0.27638	0.00013356	0.10265	4.9603E-05	0.37903	0.00018316	483.23402491271406	44.389	1.191	44.389	43.904	45.095	0					98	43	3	0	0	0	0.0032746	4	9839	9742;9794;9839;9884		100.09	41.412	1	2623600			5421	5365	2672	2672	7623;7624;7625;7626	7625		649			-0.03010175316387631
DGVTMQVTV	9	Oxidation (M)	_DGVTM(Oxidation (M))QVTV_		DGVTM(1)QVTV		DGVTM(93)QVTV	0	0	1		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2342834472656	2	483.23405	964.453547	0.35208	0.00017014	0.14161	6.8431E-05	0.49369	0.00023857	483.2340418140031	44.247	1.0958	44.316	43.911	45.006	0.068569					94	40	3	0	0	0	0.0041491	4	9803	9711;9757;9803;9846		93.166	45.417	1	2301200			5422	5365	2672	2672	7627;7628;7629;7630	7629		649			-0.03010175316387631
DGVTMQVTV	9	Oxidation (M)	_DGVTM(Oxidation (M))QVTV_		DGVTM(1)QVTV		DGVTM(110)QVTV	0	0	1		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2341613769531	2	483.23405	964.453547	0.28343	0.00013696	0.13774	6.6561E-05	0.42117	0.00020352	483.23404992372105	44.162	1.1553	44.239	43.834	44.99	0.076973					95	42	3	0	0	0	0.001957	4	9780	9698;9740;9780;9828		110.55	47.98	1	2534600			5423	5365	2672	2672	7631;7632;7633;7634	7633		649			-0.03010175316387631
DGWSALHI	8	Unmodified	_DGWSALHI_					0	0	0		ENSG00000198435|ENST00000356628|NRARP	ENSG00000198435|ENST00000356628|NRARP	ENSG00000198435|ENST00000356628|NRARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7245178222656	2	449.72451	897.434466	0.28599	0.00012862	-0.23284	-0.00010471	0.053155	2.3905E-05	449.72432885796167	62.49	0.74288	62.49	62.162	62.905	0					65	27	4	0	0	0	0.016422	2	15429	15386;15429		106.85	47.05	1	769770			5424	8075	2673	2673	7635;7636	7636					-0.018353438251438092
DGWSALHI	8	Unmodified	_DGWSALHI_					0	0	0		ENSG00000198435|ENST00000356628|NRARP	ENSG00000198435|ENST00000356628|NRARP	ENSG00000198435|ENST00000356628|NRARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.7245788574219	2	449.72451	897.434466	0.24061	0.00010821	-0.17754	-7.9843E-05	0.063072	2.8365E-05	449.7243460768619	62.342	0.53729	62.439	62.2	62.738	0.096985					54	19	4	0	0	0	0.011432	2	15362	15362;15407		114.94	58.403	1	983330			5425	8075	2673	2673	7637;7638	7637					-0.018353438251438092
DGWSALHI	8	Unmodified	_DGWSALHI_					0	0	0		ENSG00000198435|ENST00000356628|NRARP	ENSG00000198435|ENST00000356628|NRARP	ENSG00000198435|ENST00000356628|NRARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.7245788574219	2	449.72451	897.434466	0.2828	0.00012718	-0.30235	-0.00013598	-0.019552	-8.7929E-06	449.7243176932967	62.426	0.77188	62.417	62.167	62.938	-0.0085564					62	28	3	0	0	0	0.026049	2	15382	15382;15428		93.883	50.915	1	835010			5426	8075	2673	2673	7639;7640	7639					-0.018353438251438092
DGYAFQNLI	9	Unmodified	_DGYAFQNLI_					0	0	0		ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7562866210938	2	520.756007	1039.49746	0.4089	0.00021294	0.10885	5.6684E-05	0.51775	0.00026962	520.7560398992565	81.468	1.0192	81.468	81.147	82.166	0					147	41	5	0	0	0	3.5085E-07	4	21224	21182;21224;21271;21324		166.45	95.314	1	6205000			5427	4735;12746	2674	2674	7641;7642;7643;7644	7642					-0.020708228277499074
DGYAFQNLI	9	Unmodified	_DGYAFQNLI_					0	0	0		ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7564086914062	2	520.756007	1039.49746	0.085147	4.4341E-05	0.38964	0.00020291	0.47479	0.00024725	520.7561859755384	81.431	1.6147	81.5	80.982	82.597	0.068993					187	73	5	0	0	0	3.5085E-07	5	21193	21150;21193;21231;21278;21323		166.45	95.314	1	6998300			5428	4735;12746	2674	2674	7645;7646;7647;7648;7649	7646					-0.020708228277499074
DGYAFQNLI	9	Unmodified	_DGYAFQNLI_					0	0	0		ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.75634765625	2	520.756007	1039.49746	0.38459	0.00020028	0.12501	6.5099E-05	0.5096	0.00026538	520.7560814063805	81.535	1.0545	81.511	81.138	82.193	-0.02404					144	44	5	0	0	0	3.5085E-07	3	21226	21226;21269;21318		166.45	84.835	1	7832400			5429	4735;12746	2674	2674	7650;7651;7652	7650					-0.020708228277499074
DGYAGHVII	9	Unmodified	_DGYAGHVII_					0	0	0		ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7817077636719	2	472.745442	943.476331	0.32823	0.00015517	-0.24403	-0.00011536	0.084198	3.9804E-05	472.74528479848993	48.243	0.51203	48.243	48.044	48.556	0					31	17	2	0	0	0	0.21905	1	11037	11037		23.148	11.508	1	569700			5430	5985	2675	2675	7653	7653					0.002332118633717073
DGYAGHVII	9	Unmodified	_DGYAGHVII_					0	0	0		ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.2792053222656	2	472.745442	943.476331	0.58659	0.00027731	-0.45294	-0.00021412	0.13365	6.3184E-05	472.7450659853806	48.219	0.55173	48.266	48.049	48.601	0.047523					33	20	2	0	0	0	0.17611	1	11024	11024		26.884	7.6267	1	515290			5431	5985	2675	2675	7654	7654					0.002332118633717073
DGYAGHVII	9	Unmodified	_DGYAGHVII_					0	0	0		ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.781982421875	2	472.745442	943.476331	0.46844	0.00022145	-0.29662	-0.00014022	0.17182	8.1227E-05	472.74528082178267	48.14	0.39258	48.183	48.037	48.43	0.04332					26	14	2	0	0	0	0.19839	1	11018	11018		28.487	6.7402	1	563780			5432	5985	2675	2675	7655	7655					0.002332118633717073
DGYEQAARV	9	Unmodified	_DGYEQAARV_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.740966796875	2	504.740888	1007.46722	0.41223	0.00020807	-0.092157	-4.6515E-05	0.32007	0.00016155	504.7407395345469	30.205	1.397	30.205	29.492	30.889	0					103	49	4	0	0	0	6.549E-06	2	5512	5463;5512		155.95	84.031	1	3192800			5433	4923	2676	2676	7656;7657	7657					-0.03621181492951564
DGYEQAARV	9	Unmodified	_DGYEQAARV_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7409973144531	2	504.740888	1007.46722	0.37418	0.00018886	0.083282	4.2036E-05	0.45746	0.0002309	504.7408081165695	30.236	1.3525	30.264	29.516	30.869	0.027946					122	46	4	0	0	0	2.4752E-08	3	5511	5460;5511;5561		179.17	90.27	1	3391400			5434	4923	2676	2676	7658;7659;7660	7659					-0.03621181492951564
DGYEQAARV	9	Unmodified	_DGYEQAARV_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7410583496094	2	504.740888	1007.46722	0.016242	8.1982E-06	0.3352	0.00016919	0.35144	0.00017739	504.74097369213433	30.195	1.3689	30.222	29.55	30.919	0.027157					98	47	4	0	0	0	3.6949E-07	2	5507	5457;5507		165.72	87.571	1	3681700			5435	4923	2676	2676	7661;7662	7662					-0.03621181492951564
DGYFGGARV	9	Unmodified	_DGYFGGARV_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2;nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	ENSG00000044446|ENST00000379942|PHKA2;nc|ENSG00000067177|P46020-3|PHKA1	ENSG00000044446|ENST00000379942|PHKA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2274475097656	2	471.227417	940.44028	0.056487	2.6618E-05	-0.12145	-5.723E-05	-0.064962	-3.0612E-05	471.2273618285988	43.419	0.66859	43.419	43.18	43.849	0					40	24	2	0	0	0	0.0079761	1	9544	9544		82.529	50.224	1	728970			5436	621;859	2677	2677	7663	7663					-0.03232245313472504
DGYFGGARV	9	Unmodified	_DGYFGGARV_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2;nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	ENSG00000044446|ENST00000379942|PHKA2;nc|ENSG00000067177|P46020-3|PHKA1	ENSG00000044446|ENST00000379942|PHKA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2274169921875	2	471.227417	940.44028	0.29188	0.00013754	-0.10727	-5.055E-05	0.18461	8.6992E-05	471.22732419173127	43.118	0.51005	43.196	42.943	43.453	0.077518					46	18	3	0	0	0	0.0023784	1	9432	9432		107.19	65.092	1	886690			5437	621;859	2677	2677	7664	7664					-0.03232245313472504
DGYFGGARV	9	Unmodified	_DGYFGGARV_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2;nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	ENSG00000044446|ENST00000379942|PHKA2;nc|ENSG00000067177|P46020-3|PHKA1	ENSG00000044446|ENST00000379942|PHKA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2274475097656	2	471.227417	940.44028	0.0997	4.6981E-05	0.13742	6.4758E-05	0.23712	0.00011174	471.22745579147704	43.034	0.56744	43.125	42.903	43.471	0.091362					52	20	3	0	0	0	0.0023784	2	9400	9400;9444		107.19	65.092	1	873690			5438	621;859	2677	2677	7665;7666	7665					-0.03232245313472504
DGYKVVFV	8	Unmodified	_DGYKVVFV_					0	0	0		nc|ENSG00000164077|Q86VX9-3|MON1A;nc|ENSG00000164077|Q86VX9-2|MON1A;ENST00000486107.5_1_3:49947550-49967319:-|nuORF;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A	nc|ENSG00000164077|Q86VX9-3|MON1A	nc|ENSG00000164077|Q86VX9-3|MON1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.78924560546875	2	463.752736	925.490919	0.084098	3.9001E-05	1.6835	0.00078073	1.7676	0.00081973	463.7532809812518	56.854	0.50864	56.854	56.555	57.064	0					30	18	3	0	0	0	0.30795	1	13661	13661		30.637	5.9627	1	509220			5439	5783	2678	2678	7667	7667					0.025192840115323634
DGYKVVFV	8	Unmodified	_DGYKVVFV_					0	0	0		nc|ENSG00000164077|Q86VX9-3|MON1A;nc|ENSG00000164077|Q86VX9-2|MON1A;ENST00000486107.5_1_3:49947550-49967319:-|nuORF;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A	nc|ENSG00000164077|Q86VX9-3|MON1A	nc|ENSG00000164077|Q86VX9-3|MON1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7890930175781	2	463.752736	925.490919	0.16775	7.7797E-05	1.5134	0.00070185	1.6812	0.00077965	463.75328377787633	56.775	0.4971	56.853	56.543	57.04	0.078674					30	18	2	0	0	0	0.30241	1	13635	13635		19.257	0	1	582080			5440	5783	2678	2678	7668	7668					0.025192840115323634
DGYLMFQQV	9	Oxidation (M)	_DGYLM(Oxidation (M))FQQV_		DGYLM(1)FQQV		DGYLM(76)FQQV	0	0	1		ENSG00000243955|ENST00000334575|GSTA1;ENSG00000244067|ENST00000493422|GSTA2	ENSG00000243955|ENST00000334575|GSTA1	ENSG00000243955|ENST00000334575|GSTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.7549438476562	2	558.755149	1115.49575	0.4733	0.00026446	-1.3579	-0.00075872	-0.88457	-0.00049426	558.7541774898873	67.632	0.66868	67.71	67.382	68.05	0.078049					79	23	4	0	0	0	0.012386	2	17042	16960;17042		75.761	25.828	1	522160			5441	8563	2679	2679	7669;7670	7670		914			-0.057381999080462265
DGYLMFQQV	9	Oxidation (M)	_DGYLM(Oxidation (M))FQQV_		DGYLM(1)FQQV		DGYLM(86)FQQV	0	0	1		ENSG00000243955|ENST00000334575|GSTA1;ENSG00000244067|ENST00000493422|GSTA2	ENSG00000243955|ENST00000334575|GSTA1	ENSG00000243955|ENST00000334575|GSTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.754150390625	2	558.755149	1115.49575	0.19994	0.00011172	-1.0624	-0.00059361	-0.86243	-0.00048189	558.7544794235621	67.795	0.61995	67.779	67.451	68.071	-0.016296					66	21	4	0	0	0	0.0059482	1	17014	17014		85.642	35.709	1	518370			5442	8563	2679	2679	7671	7671		914			-0.057381999080462265
DGYMPREL	8	Oxidation (M)	_DGYM(Oxidation (M))PREL_		DGYM(1)PREL		DGYM(63)PREL	0	0	1		ENST00000495724.1_1_7:129756322-129757411:+|nuORF;nc|ENSG00000128607|Q6PID8-2|KLHDC10;ENSG00000128607|ENST00000335420|KLHDC10	ENST00000495724.1_1_7:129756322-129757411:+|nuORF	ENST00000495724.1_1_7:129756322-129757411:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.726318359375	2	498.726392	995.438231	-0.48813	-0.00024344	0.4616	0.00023021	-0.026524	-1.3228E-05	498.72652990262077	35.211	0.60798	35.288	34.92	35.528	0.077381					56	21	3	0	0	0	0.088223	1	7036	7036		62.573	40.826	1	574050			5443	3381	2680	2680	7672	7672		426			-0.059670421135820106
DGYTFVEV	8	Unmodified	_DGYTFVEV_					0	0	0		ENSG00000127220|ENST00000247706|ABHD8	ENSG00000127220|ENST00000247706|ABHD8	ENSG00000127220|ENST00000247706|ABHD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2169494628906	2	465.216183	928.417813	0.025026	1.1643E-05	0.6324	0.0002942	0.65743	0.00030585	465.2165033698099	68.976	0.60487	68.976	68.708	69.313	0					48	21	3	0	0	0	0.079438	2	17378	17378;17438		64.236	28.192	1	467840			5444	3308	2681	2681	7673;7674	7673					-0.04925889501760139
DGYTFVEV	8	Unmodified	_DGYTFVEV_					0	0	0		ENSG00000127220|ENST00000247706|ABHD8	ENSG00000127220|ENST00000247706|ABHD8	ENSG00000127220|ENST00000247706|ABHD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.21649169921875	2	465.216183	928.417813	0.11842	5.5091E-05	0.46759	0.00021753	0.58601	0.00027262	465.2163706557802	68.874	0.53456	68.946	68.729	69.264	0.071938					41	19	3	0	0	0	0.064917	2	17361	17361;17418		71.134	20.279	1	471160			5445	3308	2681	2681	7675;7676	7675					-0.04925889501760139
DGYTFVEV	8	Unmodified	_DGYTFVEV_					0	0	0		ENSG00000127220|ENST00000247706|ABHD8	ENSG00000127220|ENST00000247706|ABHD8	ENSG00000127220|ENST00000247706|ABHD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2166442871094	2	465.216183	928.417813	0.20153	9.3755E-05	0.23242	0.00010813	0.43395	0.00020188	465.2162473493724	68.98	0.61609	68.961	68.68	69.296	-0.01915					48	21	3	0	0	0	0.079438	1	17370	17370		64.236	13.381	1	443050			5446	3308	2681	2681	7677	7677					-0.04925889501760139
DGYTIVVRI	9	Unmodified	_DGYTIVVRI_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2962646484375	2	518.295299	1034.57605	0.4176	0.00021644	-0.24989	-0.00012952	0.16771	8.6923E-05	518.2957060902968	63.205	2.0312	63.205	62.776	64.807	0					212	74	4	0	0	0	0.00045155	5	15641	15593;15641;15687;15741;15790		129.77	54.843	1	45821000			5447	5917	2682	2682	7678;7679;7680;7681;7682	7679					0.060140294773418645
DGYTIVVRI	9	Unmodified	_DGYTIVVRI_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3319091796875	2	518.295299	1034.57605	0.38145	0.00019771	0.7126	0.00036934	1.0941	0.00056704	518.295628605027	67.928	0.81869	67.928	67.51	68.329	0					42	29	2	0	0	0	0.14646	1	17033	17033		43.772	14.691	1	185870			5448	5917	2682	2682	7683	7683					0.060140294773418645
DGYTIVVRI	9	Unmodified	_DGYTIVVRI_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2954711914062	2	518.295299	1034.57605	0.39387	0.00020414	-0.27505	-0.00014256	0.11882	6.1584E-05	518.2957028532547	63.074	2.2511	63.17	62.469	64.721	0.095722					227	81	5	0	0	0	0.00019464	6	15557	15557;15598;15649;15693;15737;15782		133.05	54.843	1	41716000			5449	5917	2682	2682	7684;7685;7686;7687;7688;7689	7684					0.060140294773418645
DGYTIVVRI	9	Unmodified	_DGYTIVVRI_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.296142578125	2	518.295299	1034.57605	0.32982	0.00017094	-0.22209	-0.00011511	0.10773	5.5835E-05	518.295709399185	63.192	2.0516	63.183	62.731	64.782	-0.0085526					196	74	4	0	0	0	0.00045155	6	15625	15581;15625;15673;15718;15767;15811		129.77	54.843	1	41488000			5450	5917	2682	2682	7690;7691;7692;7693;7694;7695	7691					0.060140294773418645
DGYVVKETI	9	Unmodified	_DGYVVKETI_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;nc|ENSG00000117676|Q15418-3|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2718505859375	2	512.27149	1022.52843	0.27158	0.00013912	0.23033	0.00011799	0.50191	0.00025712	512.2716138877397	43.809	1.4774	43.809	43.233	44.71	0					136	54	4	0	0	0	4.216E-07	3	9655	9610;9655;9699		163.69	88.758	1	12294000			5451	2805	2683	2683	7696;7697;7698	7697					0.018063304864881502
DGYVVKETI	9	Unmodified	_DGYVVKETI_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;nc|ENSG00000117676|Q15418-3|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.271728515625	2	512.27149	1022.52843	0.31097	0.0001593	0.17941	9.1907E-05	0.49038	0.00025121	512.2715515035243	43.623	1.3179	43.7	43.373	44.691	0.077518					131	48	5	0	0	0	3.4202E-05	3	9597	9552;9597;9645		151.48	76.551	1	12131000			5452	2805	2683	2683	7699;7700;7701	7700					0.018063304864881502
DGYVVKETI	9	Unmodified	_DGYVVKETI_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;nc|ENSG00000117676|Q15418-3|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2717895507812	2	512.27149	1022.52843	0.31021	0.00015891	0.13235	6.7801E-05	0.44256	0.00022671	512.2715486419665	43.612	1.402	43.696	43.356	44.758	0.083992					129	51	5	0	0	0	4.216E-07	3	9585	9538;9585;9634		163.69	88.758	1	13237000			5453	2805	2683	2683	7702;7703;7704	7703					0.018063304864881502
DHARVFSRLFC	11	Unmodified	_DHARVFSRLFC_					0	0	0			REV__ENSG00000011523|ENST00000377990|CEP68	REV__ENSG00000011523|ENST00000377990|CEP68	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.5698547363281	3	450.896034	1349.66627	-0.17211	-7.7602E-05	0.52072	0.00023479	0.34862	0.00015719	450.89643039914336	27.9	0.62169	27.895	27.545	28.167	-0.0042572					55	21	4	0	0	0	0.3322	1	4769	4769		4.7159	0	1	190390	+		5454	13435	2684	2684	7705	7705					0.005427555341157131
DHDMIGTDDLI	11	Unmodified	_DHDMIGTDDLI_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.52056884765625	3	415.520299	1243.53907	0.068931	2.8642E-05	0.032283	1.3414E-05	0.10121	4.2057E-05	415.52051524001973	49.607	0.55151	49.607	49.267	49.819	0					78	19	5	0	0	0	0.43198	1	11415	11415		7.0371	0	1	1110900			5455	8391	2685	2685	7706	7706					-0.07296054921380346
DHEYTTKEIF	10	Unmodified	_DHEYTTKEIF_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.9295654296875	3	428.203187	1281.58773	-0.088038	-3.7698E-05	-2.7859	-0.0011929	-2.874	-0.0012306	428.20211746398485	32.989	0.34712	32.989	32.692	33.039	0					16	11	3	0	0	0	0.31942	1	6356	6356		3.5871	0	1	84027			5456	8155	2686	2686	7707	7707					-0.04179818290003823
DHFGYEDEPL	10	Unmodified	_DHFGYEDEPL_					0	0	0			REV__CON__Q3ZBS7	REV__CON__Q3ZBS7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.2562255859375	2	611.256568	1220.49858	0.31881	0.00019488	-0.61556	-0.00037627	-0.29675	-0.00018139	611.2560550990743	38.135	0.61112	38.135	37.795	38.406	0					46	21	3	0	0	0	0.38515	1	7928	7928		6.2058	2.9245	1	599350	+	+	5457	13271	2687	2687	7708	7708					-0.10284653249505027
DHGDQEEL	8	Unmodified	_DHGDQEEL_					0	0	0			REV__nc|ENSG00000059145|Q9H9P5|UNKL	REV__nc|ENSG00000059145|Q9H9P5|UNKL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2057800292969	2	471.693603	941.372654	0.43264	0.00020407	-1.9374	-0.00091387	-1.5048	-0.0007098	471.69237499497325	76.805	0.33777	76.774	76.567	76.905	-0.031433					16	12	2	0	0	0	0.41097	1	19785	19785		18.135	0	1	96328	+		5458	13613	2688	2688	7709	7709					-0.10037740034942999
DHGWCAGY	8	Unmodified	_DHGWCAGY_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.671630859375	2	454.67142	907.328287	0.088509	4.0243E-05	0.79457	0.00036127	0.88307	0.00040151	454.6715550186342	94.743	0.60379	94.826	94.596	95.2	0.082779					108	50	3	0	0	0	0.46461	1	25281	25281		0.79363	0.79363	1	442880			5459	8266	2689	2689	7710	7710					-0.12908422662121666
DHGWCAGY	8	Unmodified	_DHGWCAGY_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.67144775390625	2	454.67142	907.328287	0.23533	0.000107	0.60488	0.00027502	0.8402	0.00038202	454.671451814103	94.826	0.67421	94.824	94.595	95.269	-0.0020142					123	58	3	0	0	0	0.46461	1	25336	25336		0.79363	0.10326	1	399250			5460	8266	2689	2689	7711	7711					-0.12908422662121666
DHGWCAGY	8	Unmodified	_DHGWCAGY_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	454.67142	907.328287	-0.042011	-1.9101E-05	0.81253	0.00036943	0.77052	0.00035033	454.6715282474229	94.909	0.57948	94.909	94.635	95.215	0	0.056228	6.9728E-05	NaN	0.79363	108	50	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196030			5461	8266	2689	2689							-0.12908422662121666
DHKEILFHQD	10	Unmodified	_DHKEILFHQD_					0	0	0			REV__ENSG00000167014|ENST00000340827|TERB2	REV__ENSG00000167014|ENST00000340827|TERB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.3153686523438	2	641.314751	1280.61495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.01	1	101.04	100.54	101.54	0.027206								0	0	0	0.37807	1	26954	26954		2.9952	1.151	1		+		5462	17358	2690	2690	7712	7712					-0.014132899589412773
DHLIFFTKP	9	Unmodified	_DHLIFFTKP_					0	0	0			REV__ENST00000465524.5_1_19:49414488-49422475:+|nuORF	REV__ENST00000465524.5_1_19:49414488-49422475:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8289184570312	2	559.305667	1116.59678	0.26861	0.00015023	-1.3807	-0.00077222	-1.1121	-0.00062199	559.3055024154116	24.726	0.56313	24.726	24.395	24.958	0					42	18	3	0	0	0	0.25779	1	3814	3814		6.2058	0.47393	1	121640	+		5463	14420	2691	2691	7713	7713					0.04314619856972968
DHMTLWRGF	9	Unmodified	_DHMTLWRGF_					0	0	0		nc|ENSG00000165269|O14520-2|AQP7;ENST00000412626.2_1_9:67272267-67281749:-|nuORF;nc|ENSG00000279688|A6NL99|AQP7P3;ENSG00000165269|ENST00000297988|AQP7;ENSG00000259916|ENST00000561882|AQP7B;nc|ENSG00000259916|A0A075B734|AQP7B	nc|ENSG00000165269|O14520-2|AQP7	nc|ENSG00000165269|O14520-2|AQP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.7761840820312	2	581.776751	1161.53895	0.5127	0.00029828	-1.3116	-0.00076309	-0.79894	-0.00046481	581.7754992398608	49.944	0.79795	49.965	49.563	50.361	0.020691					83	29	4	0	0	0	0.18803	1	11579	11579		25.399	10.818	1	350280			5464	5942	2692	2692	7714	7714					-0.03535965340097391
DHMTLWRGF	9	Unmodified	_DHMTLWRGF_					0	0	0		nc|ENSG00000165269|O14520-2|AQP7;ENST00000412626.2_1_9:67272267-67281749:-|nuORF;nc|ENSG00000279688|A6NL99|AQP7P3;ENSG00000165269|ENST00000297988|AQP7;ENSG00000259916|ENST00000561882|AQP7B;nc|ENSG00000259916|A0A075B734|AQP7B	nc|ENSG00000165269|O14520-2|AQP7	nc|ENSG00000165269|O14520-2|AQP7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	581.776751	1161.53895	0.51861	0.00030172	-1.5432	-0.00089779	-1.0246	-0.00059607	581.7755116773287	49.978	0.94342	50.023	49.46	50.403	0.044891	0.029718	1.0952E-06	NaN	25.399	65	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337690			5465	5942	2692	2692							-0.03535965340097391
DHPILTYF	8	Unmodified	_DHPILTYF_					0	0	0			REV__ENSG00000143799|ENST00000366794|PARP1	REV__ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.3070068359375	2	503.255643	1004.49673	0.45759	0.00023029	-0.55339	-0.0002785	-0.095799	-4.8211E-05	503.2553689068214	57.028	0.77257	57.009	56.78	57.553	-0.019077					38	27	2	0	0	0	0.31934	1	13667	13667		24.674	10.768	1	700440	+		5466	16201	2693	2693	7715	7715					-0.005336174768217461
DHRIRVFH	8	Unmodified	_DHRIRVFH_					0	0	0		ENST00000460402.5_1_22:19776234-19842274:-|nuORF;ENSG00000185838|ENST00000329517|GNB1L	ENST00000460402.5_1_22:19776234-19842274:-|nuORF	ENST00000460402.5_1_22:19776234-19842274:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8003540039062	2	540.296499	1078.57845	0.2646	0.00014296	-1.5343	-0.000829	-1.2697	-0.00068604	540.2923751550312	95.527	1.3666	95.527	94.623	95.989	0					267	129	3	0	0	0	0.4397	1	25427	25427		9.3474	2.6243	1	132730			5467	7560	2694	2694	7716	7716					0.04229922725653523
DHTFGNASGF	10	Unmodified	_DHTFGNASGF_					0	0	0		ENSG00000154646|ENST00000284885|TMPRSS15	ENSG00000154646|ENST00000284885|TMPRSS15	ENSG00000154646|ENST00000284885|TMPRSS15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2722778320312	2	526.725238	1051.43592	0.55173	0.00029061	0.21377	0.0001126	0.76551	0.00040321	526.7253415583319	46.059	0.4379	46.059	45.86	46.298	0					33	15	3	0	0	0	0.31237	1	10370	10370		11.495	0	1	515220			5468	5140	2695	2695	7717	7717					-0.08773754527032906
DHYNQQTF	8	Unmodified	_DHYNQQTF_					0	0	0			REV__nc|ENSG00000107937|Q9BZE4-2|GTPBP4	REV__nc|ENSG00000107937|Q9BZE4-2|GTPBP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2721557617188	2	526.725238	1051.43592	0.70299	0.00037028	-0.14277	-7.5201E-05	0.56022	0.00029508	526.7251598319757	45.72	0.552	45.785	45.544	46.096	0.065052					34	19	2	0	0	0	0.3433	1	10284	10284		6.2058	6.2058	1	369130	+		5469	14573	2696	2696	7718	7718					-0.08773754527055644
DIAMELEV	8	Unmodified	_DIAMELEV_					0	0	0			REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.2256164550781	2	460.225694	918.436834	0.39217	0.00018048	-0.088923	-4.0925E-05	0.30324	0.00013956	460.22552413303964	54.492	1.0566	54.476	53.949	55.006	-0.015923					77	37	3	0	0	0	0.25425	1	12967	12967		36.044	0	1	979290	+		5470	13608	2697	2697	7719	7719					-0.02564676202348437
DICIAYKLHLE	11	Unmodified	_DICIAYKLHLE_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.2027587890625	3	439.900563	1316.67986	-0.053598	-2.3578E-05	3.1867	0.0014018	3.1331	0.0013782	439.90228621143376	18.562	0.49575	18.562	18.269	18.765	0					25	16	2	0	0	0	0.33094	1	2015	2015		7.4771	0.43998	1	38651			5471	3863	2698	2698	7720	7720					0.03418568522693022
DICNHLRLTR	10	Unmodified	_DICNHLRLTR_					0	0	0			REV__ENST00000556095.5_1_14:96831069-96831366:+|nuORF	REV__ENST00000556095.5_1_14:96831069-96831366:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.5626525878906	3	414.224151	1239.65062	-0.37503	-0.00015534	-0.16131	-6.6819E-05	-0.53634	-0.00022216	414.22401128670697	39.291	0.56151	39.291	39.242	39.803	0					27	20	2	0	0	0	0.31889	1	8301	8301		1.5923	0.26264	1	164660	+		5472	22254	2699	2699	7721	7721					0.04038469017018542
DIEEQLKQ	8	Unmodified	_DIEEQLKQ_					0	0	0			REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43	REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2452087402344	2	501.758746	1001.50294	0.41832	0.0002099	-2.6036	-0.0013064	-2.1853	-0.0010965	501.75716220423067	42.253	0.65193	42.344	41.929	42.581	0.091362					47	22	3	0	0	0	0.3366	1	9052	9052		18.135	1.1927	1	354790	+		5473	13463	2700	2700	7722	7722					0.002248559640520398
DIEEQLKQ	8	Unmodified	_DIEEQLKQ_					0	0	0			REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43	REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	501.758746	1001.50294	0.051967	2.6075E-05	-2.427	-0.0012178	-2.3751	-0.0011917	501.75758850102574	42.493	0.48282	42.493	42.277	42.76	0	0.093646	0.00034109	NaN	18.135	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365710	+		5474	13463	2700	2700							0.002248559640520398
DIEEQLKQ	8	Unmodified	_DIEEQLKQ_					0	0	0			REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43	REV__nc|ENSG00000021461|Q9HB55-6|CYP3A43	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	501.758746	1001.50294	0.36376	0.00018252	-3.2069	-0.0016091	-2.8431	-0.0014266	501.75715866933956	42.275	0.66799	42.36	42.063	42.731	0.085197	-0.039048	-0.00044153	NaN	18.135	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	423200	+		5475	13463	2700	2700							0.002248559640520398
DIFKKEDLL	9	Unmodified	_DIFKKEDLL_					0	0	0			REV__nc|ENSG00000239474|O60662-2|KLHL41	REV__nc|ENSG00000239474|O60662-2|KLHL41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8054809570312	2	560.816064	1119.61758	0.34311	0.00019242	0.76204	0.00042736	1.1052	0.00061979	560.8161827985462	71.586	0.50858	71.586	71.402	71.911	0					39	17	3	0	0	0	0.027237	2	18173	18173;18268		61.357	2.3249	1	490060	+		5476	19161	2701	2701	7723;7724	7723					0.06255165445986677
DIFKKEDLL	9	Unmodified	_DIFKKEDLL_					0	0	0			REV__nc|ENSG00000239474|O60662-2|KLHL41	REV__nc|ENSG00000239474|O60662-2|KLHL41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8056030273438	2	560.816064	1119.61758	0.3541	0.00019858	0.67099	0.0003763	1.0251	0.00057489	560.8162068986752	71.519	0.65504	71.575	71.402	72.057	0.056572					45	23	3	0	0	0	0.027237	1	18250	18250		61.357	2.6787	1	408430	+		5477	19161	2701	2701	7725	7725					0.06255165445986677
DIFKKEDLL	9	Unmodified	_DIFKKEDLL_					0	0	0			REV__nc|ENSG00000239474|O60662-2|KLHL41	REV__nc|ENSG00000239474|O60662-2|KLHL41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8056030273438	2	560.816064	1119.61758	0.35359	0.0001983	0.7364	0.00041299	1.09	0.00061129	560.8163200324256	71.636	0.6116	71.608	71.397	72.009	-0.027275					42	21	3	0	0	0	0.088391	1	18166	18166		39.957	3.8303	1	588490	+		5478	19161	2701	2701	7726	7726					0.06255165445986677
DIFLNVYDV	9	Unmodified	_DIFLNVYDV_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-4|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2976684570312	2	549.279315	1096.54408	0.14875	8.1707E-05	-0.15049	-8.2659E-05	-0.0017337	-9.5226E-07	549.2791972979626	73.716	0.5616	73.716	73.468	74.029	0					33	19	2	0	0	0	0.13748	1	18918	18918		32.786	13.529	1	544000			5479	2855	2702	2702	7727	7727					-0.0003338299648021348
DIFLNVYDV	9	Unmodified	_DIFLNVYDV_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-4|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.29736328125	2	549.279315	1096.54408	0.3842	0.00021103	-0.25647	-0.00014087	0.12774	7.0163E-05	549.2790614642377	73.697	0.45541	73.749	73.494	73.95	0.052361					29	15	2	0	0	0	0.13748	1	18896	18896		32.786	6.5175	1	586750			5480	2855	2702	2702	7728	7728					-0.0003338299648021348
DIFVEHII	8	Unmodified	_DIFVEHII_					0	0	0			REV__ENST00000473875.5_1_1:244724068-244773670:+|nuORF	REV__ENST00000473875.5_1_1:244724068-244773670:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8262634277344	2	493.271293	984.528032	0.10122	4.9928E-05	-0.10546	-5.2019E-05	-0.00424	-2.0915E-06	493.2711342125293	61.908	0.31164	61.899	61.728	62.04	-0.0085526					15	10	2	0	0	0	0.29855	1	15211	15211		32.117	5.7757	1	95760	+		5481	18073	2703	2703	7729	7729					0.03514955557295707
DIFVHRDL	8	Unmodified	_DIFVHRDL_					0	0	0			REV__ENST00000563218.5_1_16:89599028-89614565:+|nuORF	REV__ENST00000563218.5_1_16:89599028-89614565:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7877502441406	2	507.771991	1013.52943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.17	1	27.17	26.67	27.67	0								0	0	0	0.36336	1	4575	4575		8.5933	0	1		+		5482	18781	2704	2704	7730	7730					0.023205896460467557
DIHTNTCRLAF	11	Unmodified	_DIHTNTCRLAF_					0	0	0		ENSG00000132394|ENST00000254730|EEFSEC;nc|ENSG00000132394|P57772-2|EEFSEC	ENSG00000132394|ENST00000254730|EEFSEC	ENSG00000132394|ENST00000254730|EEFSEC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8874816894531	3	430.880162	1289.61866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.556	1	34.634	34.134	35.134	0.077377								0	0	0	0.37548	1	6820	6820		2.6312	0.72486	1				5483	3629	2705	2705	7731	7731					-0.014569434567420103
DIIFIIREEK	10	Unmodified	_DIIFIIREEK_					0	0	0			REV__nc|ENSG00000143199|Q96PN6-4|ADCY10	REV__nc|ENSG00000143199|Q96PN6-4|ADCY10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.3662109375	2	638.368995	1274.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.85	1	100.85	100.35	101.35	0								0	0	0	0.38126	1	26920	26920		1.6526	0	1		+		5484	16157	2706	2706	7732	7732					0.09706501291452696
DIINYCVAL	9	Unmodified	_DIINYCVAL_					0	0	0		nc|ENSG00000112053|Q96RN1-4|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8;ENST00000486155.1_1_6:35928714-35992326:-|nuORF	nc|ENSG00000112053|Q96RN1-4|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2628173828125	2	512.26261	1022.51067	0.47753	0.00024462	-0.11735	-6.0116E-05	0.36018	0.00018451	512.2626470997205	55.254	0.71884	55.325	55.085	55.804	0.070889					63	26	3	0	0	0	0.23767	1	13226	13226		18.146	1.2041	1	537140			5485	2407	2707	2707	7733	7733					0.0003129195997644274
DIINYCVAL	9	Unmodified	_DIINYCVAL_					0	0	0		nc|ENSG00000112053|Q96RN1-4|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8;ENST00000486155.1_1_6:35928714-35992326:-|nuORF	nc|ENSG00000112053|Q96RN1-4|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	512.26261	1022.51067	0.25554	0.0001309	0.70888	0.00036313	0.96442	0.00049403	512.2627306447787	55.383	0.49073	55.364	55.155	55.646	-0.019077	0.017726	0.00019316	NaN	18.146	44	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	737160			5486	2407	2707	2707							0.0003129195997644274
DIIPTMTTI	9	Unmodified	_DIIPTMTTI_					0	0	0		ENST00000572418.1_1_17:3801110-3806945:-|nuORF;ENSG00000108405|ENST00000225538|P2RX1	ENST00000572418.1_1_17:3801110-3806945:-|nuORF	ENST00000572418.1_1_17:3801110-3806945:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.7579040527344	2	502.770268	1003.52598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.237	1	85.224	84.724	85.724	-0.01284								0	0	0	0.23367	1	22367	22367		11.64	0.81637	1				5487	2184	2708	2708	7734	7734					0.024361587571547716
DIKALNAK	8	Unmodified	_DIKALNAK_					0	0	0		ENSG00000143473|ENST00000271751|KCNH1;nc|ENSG00000143473|O95259-2|KCNH1	ENSG00000143473|ENST00000271751|KCNH1	ENSG00000143473|ENST00000271751|KCNH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2616882324219	2	436.763635	871.512717	0.096421	4.2113E-05	-0.89479	-0.00039081	-0.79837	-0.0003487	436.7631150064556	32.741	0.48664	32.741	32.469	32.955	0					26	16	2	0	0	0	0.34131	1	6331	6331		12.532	0	1	213210			5488	4518	2709	2709	7735	7735					0.07182088760077932
DIKALNAK	8	Unmodified	_DIKALNAK_					0	0	0		ENSG00000143473|ENST00000271751|KCNH1;nc|ENSG00000143473|O95259-2|KCNH1	ENSG00000143473|ENST00000271751|KCNH1	ENSG00000143473|ENST00000271751|KCNH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.261474609375	2	436.763635	871.512717	0.024428	1.0669E-05	-0.62643	-0.0002736	-0.602	-0.00026293	436.7632826098544	32.63	0.54082	32.685	32.415	32.956	0.054375					28	19	2	0	0	0	0.34131	1	6303	6303		12.532	0	1	168480			5489	4518	2709	2709	7736	7736					0.07182088760077932
DIKHVKALF	9	Unmodified	_DIKHVKALF_					0	0	0			REV__nc|ENSG00000101868|P09884|POLA1	REV__nc|ENSG00000101868|P09884|POLA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2589721679688	2	535.821484	1069.62842	0.6053	0.00032433	0.95324	0.00051077	1.5585	0.0008351	535.8218123381826	45.895	0.84923	45.96	45.516	46.366	0.065048					48	30	2	0	0	0	0.25526	1	10349	10349		4.3292	0	1	358360	+		5490	14291	2710	2710	7737	7737					0.09638612610933706
DILENKESW	9	Unmodified	_DILENKESW_					0	0	0		ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2615966796875	2	567.277303	1132.54005	0.17357	9.846E-05	-0.49794	-0.00028247	-0.32438	-0.00018401	567.2767096867544	98.622	0.5495	98.673	98.344	98.894	0.050888					103	66	2	0	0	0	0.25622	1	26366	26366		7.2892	7.2892	1	623200			5491	8032	2711	2711	7738	7738					-0.020914724902013404
DILTWGPTF	9	Unmodified	_DILTWGPTF_					0	0	0			REV__ENSG00000146250|ENST00000369700|PRSS35	REV__ENSG00000146250|ENST00000369700|PRSS35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8008422851562	2	525.26875	1048.52295	0.65728	0.00034525	-0.05487	-2.8821E-05	0.60241	0.00031643	525.2684617430882	49.914	0.53209	49.935	49.67	50.202	0.020691					37	19	3	0	0	0	0.2451	1	11516	11516		15.847	1.0089	1	517840	+		5492	16338	2712	2712	7739	7739					0.00062651694656779
DINTIDRIF	9	Unmodified	_DINTIDRIF_					0	0	0		ENSG00000109458|ENST00000262994|GAB1;nc|ENSG00000109458|Q13480-2|GAB1	ENSG00000109458|ENST00000262994|GAB1	ENSG00000109458|ENST00000262994|GAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.78564453125	2	553.795663	1105.57677	0.59134	0.00032748	-0.12331	-6.8289E-05	0.46803	0.00025919	553.7956260868606	32.557	0.50281	32.557	32.279	32.782	0					47	17	4	0	0	0	0.19747	1	6165	6165		24.021	2.4836	1	325230			5493	2254	2713	2713	7740	7740					0.02820824126365551
DINTIDRIF	9	Unmodified	_DINTIDRIF_					0	0	0		ENSG00000109458|ENST00000262994|GAB1;nc|ENSG00000109458|Q13480-2|GAB1	ENSG00000109458|ENST00000262994|GAB1	ENSG00000109458|ENST00000262994|GAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.78564453125	2	553.795663	1105.57677	0.31972	0.00017706	0.00933	5.1669E-06	0.32905	0.00018222	553.7957529840018	32.474	0.485	32.528	32.306	32.791	0.054375					49	17	4	0	0	0	0.19747	1	6138	6138		24.021	2.2739	1	256410			5494	2254	2713	2713	7741	7741					0.02820824126365551
DIRAILSCM	9	Unmodified	_DIRAILSCM_					0	0	0		ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2623291015625	2	511.262087	1020.50962	0.30329	0.00015506	-0.60406	-0.00030883	-0.30078	-0.00015378	511.26199324866036	57.846	1.4463	57.846	57.495	58.941	0					146	50	5	0	0	0	0.12642	2	13980	13980;14027		34.402	1.616	1	9745800			5495	5359	2714	2714	7742;7743	7742					0.00018754319421532273
DIRAILSCM	9	Unmodified	_DIRAILSCM_					0	0	0		ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.262451171875	2	511.262087	1020.50962	0.2937	0.00015016	-0.63729	-0.00032582	-0.34359	-0.00017566	511.26196762597846	57.695	1.1804	57.781	57.491	58.671	0.085617					147	42	5	0	0	0	0.17277	1	13893	13893		27.629	2.2295	1	9962800			5496	5359	2714	2714	7744	7744					0.00018754319421532273
DIRAILSCM	9	Unmodified	_DIRAILSCM_					0	0	0		ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	ENSG00000158480|ENST00000289431|SPATA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.26226806640625	2	511.262087	1020.50962	0.20164	0.00010309	-0.17808	-9.1046E-05	0.023557	1.2044E-05	511.2621026256872	57.82	1.0511	57.803	57.416	58.467	-0.0172					103	38	4	0	0	0	0.12642	1	13975	13975		34.402	1.616	1	10443000			5497	5359	2714	2714	7745	7745					0.00018754319421532273
DIRGNVLL	8	Unmodified	_DIRGNVLL_					0	0	0			REV__nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1	REV__nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.269775390625	2	450.269084	898.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.353	1	80.327	79.827	80.827	-0.026825								0	0	0	0.37078	1	20864	20864		5.2307	2.3415	1		+		5498	19234	2715	2715	7746	7746					0.07029491134380805
DIRGWLNV	8	Unmodified	_DIRGWLNV_					0	0	0		nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7646179199219	2	486.766709	971.518865	0.16933	8.2425E-05	-1.8789	-0.00091461	-1.7096	-0.00083218	486.76457904209633	17.954	0.64087	17.954	17.628	18.269	0					50	21	3	0	0	0	0.44389	1	1771	1771		7.9102	0.62092	1	91743			5499	12769	2716	2716	7747	7747					0.03196606991616591
DIRQVPSP	8	Unmodified	_DIRQVPSP_					0	0	0			REV__ENSG00000198265|ENST00000358691|HELZ	REV__ENSG00000198265|ENST00000358691|HELZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2690734863281	2	456.250892	910.48723	0.18214	8.3103E-05	-0.18339	-8.3672E-05	-0.0012464	-5.6866E-07	456.25075830514777	40.514	1.1486	40.613	40.062	41.211	0.099407					59	41	2	0	0	0	0.34117	1	8487	8487		13.906	1.3745	1	334380	+		5500	18813	2717	2717	7748	7748					0.02840614237675254
DIRRAFFLVFF	11	Unmodified	_DIRRAFFLVFF_					0	0	0		ENSG00000197563|ENST00000640252|PIGN	ENSG00000197563|ENST00000640252|PIGN	ENSG00000197563|ENST00000640252|PIGN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.24786376953125	3	477.602957	1429.78704	0.024375	1.1641E-05	1.4957	0.00071434	1.52	0.00072598	477.6035952880436	33.229	0.38726	33.229	33.039	33.426	0					31	13	3	0	0	0	0.33326	1	6462	6462		1.4551	0	1	266850			5501	7977	2718	2718	7749	7749					0.08933906519200718
DIRRSGPML	9	Unmodified	_DIRRSGPML_					0	0	0			REV__ENST00000342572.12_1_17:80401154-80401304:-|nuORF	REV__ENST00000342572.12_1_17:80401154-80401304:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7592163085938	2	522.784576	1043.5546	-0.93831	-0.00049054	-3.07	-0.001605	-4.0083	-0.0020955	522.7825417111114	34.752	0.58982	34.752	34.472	35.062	0					26	20	2	0	0	0	0.25431	1	6818	6818		9.3831	1.473	1	112750	+		5502	20124	2719	2719	7750	7750					0.03456321176963684
DISLLWTLK	9	Unmodified	_DISLLWTLK_					0	0	0			REV__ENSG00000147465|ENST00000276449|STAR	REV__ENSG00000147465|ENST00000276449|STAR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2510375976562	2	544.82115	1087.62775	0.26943	0.00014679	-4.1382	-0.0022546	-3.8688	-0.0021078	545.3189986724376	69.453	0.14561	69.453	69.339	69.485	0					6	4	2	0	0	0	0.25622	1	17536	17536		7.2892	0.56607	1	86876	+		5503	16388	2720	2720	7751	7751					0.08743773171227076
DITPDCPSF	9	Unmodified	_DITPDCPSF_					0	0	0			REV__ENST00000542060.5_1_1:180945439-180945631:-|nuORF	REV__ENST00000542060.5_1_1:180945439-180945631:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.28173828125	2	497.71295	993.411348	0.75615	0.00037635	0.4573	0.0002276	1.2135	0.00060395	497.71320209155874	78.574	0.52383	78.544	78.37	78.894	-0.030434					36	19	2	0	0	0	0.24311	1	20343	20343		11.64	2.2929	1	183550	+		5504	22134	2721	2721	7752	7752					-0.0856215072477653
DITTERQI	8	Unmodified	_DITTERQI_					0	0	0			REV__ENSG00000174007|ENST00000409690|CEP19	REV__ENSG00000174007|ENST00000409690|CEP19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2502136230469	2	488.258914	974.503274	0.31248	0.00015257	-0.15987	-7.806E-05	0.1526	7.451E-05	488.2588195027524	16.654	2.1389	16.592	15.943	18.082	-0.062534					169	75	4	0	0	0	0.4419	1	1833	1833		8.5933	0.43775	1	1166400	+		5505	17813	2722	2722	7753	7753					0.01500275683918062
DIVDEAIYYF	10	Unmodified	_DIVDEAIYYF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.5326843261719	3	416.532533	1246.57577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.462	1	41.462	40.962	41.962	0								0	0	0	0.35461	1	8937	8937		12.873	2.0731	1				5506	2353	2723	2723	7754	7754					-0.037654350332104514
DIVHVSRKI	9	Unmodified	_DIVHVSRKI_					0	0	0		ENST00000314759.5_1_13:21742466-21746510:-|nuORF	ENST00000314759.5_1_13:21742466-21746510:-|nuORF	ENST00000314759.5_1_13:21742466-21746510:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.822509765625	2	533.822015	1065.62948	0.37182	0.00019849	0.47528	0.00025371	0.8471	0.0004522	533.8219285981811	19.801	0.49609	19.685	19.514	20.01	-0.11592					28	16	2	0	0	0	0.3208	1	2401	2401		5.7319	0.43497	1	68992			5507	9346	2724	2724	7755	7755					0.09928826979853511
DIYKEKTKKK	10	Unmodified	_DIYKEKTKKK_					0	0	0			REV__nc|ENSG00000224411|Q14568|HSP90AA2P	REV__nc|ENSG00000224411|Q14568|HSP90AA2P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.8825073242188	2	640.88227	1279.74999	0.23438	0.00015021	0.44362	0.00028431	0.67799	0.00043451	640.8825245810888	16.261	0.54043	16.261	15.981	16.521	0					52	18	4	0	0	0	0.41242	1	1338	1338		1.1933	0	1	166030	+		5508	23195	2725	2725	7756	7756					0.12130190182801925
DIYKIREI	8	Unmodified	_DIYKIREI_					0	0	0		ENST00000442760.2_1_13:45914489-45915204:-|nuORF;ENSG00000133112|ENST00000530705|TPT1	ENST00000442760.2_1_13:45914489-45915204:-|nuORF	ENST00000442760.2_1_13:45914489-45915204:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8316040039062	2	525.303124	1048.5917	0.44626	0.00023442	-0.70778	-0.0003718	-0.26152	-0.00013738	525.3027253922917	43.972	0.46476	43.972	43.741	44.206	0					41	16	3	0	0	0	0.34068	1	9752	9752		16.149	3.1066	1	434050			5509	3696	2726	2726	7757	7757					0.06934315994362805
DIYKIREI	8	Unmodified	_DIYKIREI_					0	0	0		ENST00000442760.2_1_13:45914489-45915204:-|nuORF;ENSG00000133112|ENST00000530705|TPT1	ENST00000442760.2_1_13:45914489-45915204:-|nuORF	ENST00000442760.2_1_13:45914489-45915204:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	525.303124	1048.5917	0.49693	0.00026104	-0.6274	-0.00032957	-0.13046	-6.8533E-05	525.3025945492557	43.746	0.54171	43.823	43.483	44.024	0.077518	-0.040748	1.9217E-05	NaN	16.149	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	553610			5510	3696	2726	2726							0.06934315994362805
DIYLMGCFVF	10	Unmodified	_DIYLMGCFVF_					0	0	0		ENSG00000163288|ENST00000295454|GABRB1	ENSG00000163288|ENST00000295454|GABRB1	ENSG00000163288|ENST00000295454|GABRB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.26947021484375	3	403.189056	1206.54534	-0.037067	-1.4945E-05	4.0034	0.0016141	3.9664	0.0015992	403.190541768841	52.521	0.24876	52.521	52.438	52.686	0					11	8	2	0	0	0	0.3156	1	12311	12311		3.5871	0	1	264720			5511	5661	2727	2727	7758	7758					-0.04967208223592934
DIYPISPSF	9	Unmodified	_DIYPISPSF_					0	0	0		HERVH-int_dup513|chr2:34793244-34793739:+|1.4865682256419128|0.1927943028624172|2.95|519.0|7|1|sense	HERVH-int_dup513|chr2:34793244-34793739:+|1.4865682256419128|0.1927943028624172|2.95|519.0|7|1|sense	HERVH-int_dup513|chr2:34793244-34793739:+|1.4865682256419128|0.1927943028624172|2.95|519.0|7|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7973022460938	2	519.760758	1037.50696	0.58591	0.00030453	-0.76252	-0.00039633	-0.17661	-9.1797E-05	519.7603251571362	84.638	0.65453	84.719	84.501	85.156	0.080879					47	25	2	0	0	0	0.17611	1	22234	22234		34.102	1.797	1	275620			5512	12405	2728	2728	7759	7759					-0.010290545422321884
DIYVIPQPHF	10	Unmodified	_DIYVIPQPHF_					0	0	0		ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF	ENSG00000137812|ENST00000399668|KNL1	ENSG00000137812|ENST00000399668|KNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5392150878906	3	410.21688	1227.62881	0.66072	0.00027104	-1.3894	-0.00056997	-0.72872	-0.00029893	410.55063601367107	47.397	0.23584	47.451	47.256	47.491	0.054371					12	8	2	0	0	0	0.31969	1	10757	10757		3.3196	0	1	195260			5513	4078	2729	2729	7760	7760					0.02409987540113434
DIYVLQLSP	9	Unmodified	_DIYVLQLSP_					0	0	0		DTX3|p.P69Rfs*9|1|0.37|ENSG00000178498|chr12:57607065-57607065|C/-|frameshift_variant;ENSG00000178498|ENST00000337737|DTX3;nc|ENSG00000178498|Q8N9I9-2|DTX3	DTX3|p.P69Rfs*9|1|0.37|ENSG00000178498|chr12:57607065-57607065|C/-|frameshift_variant	DTX3|p.P69Rfs*9|1|0.37|ENSG00000178498|chr12:57607065-57607065|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.7894897460938	2	524.289682	1046.56481	0.34805	0.00018248	2.7783	0.0014567	3.1264	0.0016391	524.2914790438269	23.752	0.78028	23.752	23.278	24.058	0					34	26	2	0	0	0	0.24311	1	3570	3570		16.942	2.104	1	57508			5514	275	2730	2730	7761	7761					0.04339207383191024
DKADISEIRVF	11	Unmodified	_DKADISEIRVF_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;DNAH6|p.R2893Pfs*33|1|0.06|ENSG00000115423|chr2:84705697-84705698|-/CTTATCATATTCTAAAA|frameshift_variant	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.56671142578125	3	431.566348	1291.67722	0.20129	8.6868E-05	0.33596	0.00014499	0.53725	0.00023186	431.56660049178754	37.574	1.5314	37.574	37.259	38.79	0					193	54	6	0	0	0	0.36161	2	7752	7752;7796		16.275	4.047	1	8625900			5515	2646	2731	2731	7762;7763	7762					0.04304436389338662
DKDDEYDEEEE	11	Unmodified	_DKDDEYDEEEE_					0	0	0			REV__ENSG00000164463|ENST00000296953|CREBRF	REV__ENSG00000164463|ENST00000296953|CREBRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.792236328125	3	472.503808	1414.48959	-0.28179	-0.00013315	-0.78948	-0.00037303	-1.0713	-0.00050618	472.503502253555	28.09	0.37168	28.09	27.87	28.241	0					32	12	5	0	0	0	0.33348	1	4818	4818		0.40827	0.31342	1	130110	+		5516	17159	2732	2732	7764	7764					-0.2010713618715272
DKDDMFSFY	9	Unmodified	_DKDDMFSFY_					0	0	0			REV__nc|ENSG00000151623|P08235-4|NR3C2	REV__nc|ENSG00000151623|P08235-4|NR3C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.8087768554688	2	584.23679	1166.45903	0.38425	0.00022449	0.16181	9.4536E-05	0.54606	0.00031903	584.2369230333778	62.363	0.33891	62.363	62.213	62.552	0					18	12	2	0	0	0	0.21389	1	15373	15373		13.906	1.3745	1	102370	+		5517	16546	2733	2733	7765	7765					-0.11754496524599745
DKELLWHFR	9	Unmodified	_DKELLWHFR_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.22442626953125	3	415.224257	1242.65094	0.15303	6.3543E-05	0.048092	1.9969E-05	0.20112	8.3512E-05	415.22422135054114	33.018	1.1018	33.073	32.765	33.867	0.054371					88	39	3	0	0	0	0.30824	1	6382	6382		7.609	0.13188	1	1646700			5518	2029	2734	2734	7766	7766					0.03932212008544411
DKERLHDS	8	Unmodified	_DKERLHDS_					0	0	0			REV__ENSG00000154330|ENST00000396396|PGM5	REV__ENSG00000154330|ENST00000396396|PGM5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.79742431640625	2	500.246338	998.478122	0.69838	0.00034936	-0.15475	-7.7414E-05	0.54363	0.00027195	500.2461587066437	50.486	0.51626	50.486	50.138	50.654	0					30	18	2	0	0	0	0.34039	1	11663	11663		15.847	0	1	205290	+		5519	16661	2735	2735	7767	7767					-0.0211777911866875
DKEWDESI	8	Unmodified	_DKEWDESI_					0	0	0			REV__ENST00000444377.5_1_1:32832225-32834867:-|nuORF	REV__ENST00000444377.5_1_1:32832225-32834867:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2268981933594	2	511.227279	1020.44001	-0.056833	-2.9055E-05	-0.66588	-0.00034042	-0.72272	-0.00036947	511.2270307918506	18.358	1.6114	18.3	17.902	19.514	-0.058174					168	56	5	0	0	0	0.4354	1	2055	2055		10.824	10.824	1	3944000	+		5520	16875	2736	2736	7768	7768					-0.06939709823996054
DKHKQKQRHRK	11	Unmodified	_DKHKQKQRHRK_					0	0	0			REV__ENST00000590234.5_1_18:47810059-47811374:-|nuORF	REV__ENST00000590234.5_1_18:47810059-47811374:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.5883483886719	3	496.958797	1487.85456	0.21268	0.00010569	1.7996	0.00089433	2.0123	0.001	496.9595674353465	29.221	0.51934	29.235	28.935	29.454	0.013474					26	18	2	0	0	0	0.33321	1	5177	5177		1.9275	1.473	1	146790	+		5521	16680	2737	2737	7769	7769					0.1301474950271313
DKHTNRNGKQR	11	Unmodified	_DKHTNRNGKQR_					0	0	0			REV__ENSG00000169018|ENST00000306917|FEM1B	REV__ENSG00000169018|ENST00000306917|FEM1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.750244140625	3	451.907991	1352.70214	-0.031068	-1.404E-05	-1.4883	-0.00067257	-1.5194	-0.00068661	451.9079810470816	22.765	0.84173	22.765	22.303	23.145	0					43	28	2	0	0	0	0.33303	1	3132	3132		2.4348	0.18206	1	39886	+		5522	17494	2738	2738	7770	7770					0.03989929035310524
DKHTNRNGKQR	11	Unmodified	_DKHTNRNGKQR_					0	0	0			REV__ENSG00000169018|ENST00000306917|FEM1B	REV__ENSG00000169018|ENST00000306917|FEM1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	451.907991	1352.70214	-0.038712	-1.7494E-05	-0.95283	-0.00043059	-0.99154	-0.00044808	451.9076499266023	22.995	0.25719	22.908	22.82	23.077	-0.087608	0.091741	0.00070858	NaN	2.4348	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57877	+		5523	17494	2738	2738							0.03989929035310524
DKHWTLSWP	9	Unmodified	_DKHWTLSWP_					0	0	0			REV__ENST00000370251.3_2_X:152610995-152612303:+|nuORF	REV__ENST00000370251.3_2_X:152610995-152612303:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.28955078125	2	585.290548	1168.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.67	1	100.71	100.21	101.21	0.038994								0	0	0	0.2505	1	26884	26884		6.2058	0.9089	1		+		5524	20373	2739	2739	7771	7771					-0.010997388081932513
DKHWTLSWP	9	Unmodified	_DKHWTLSWP_					0	0	0			REV__ENST00000370251.3_2_X:152610995-152612303:+|nuORF	REV__ENST00000370251.3_2_X:152610995-152612303:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.2893676757812	2	585.290548	1168.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.54	1	100.53	100.03	101.03	-0.006897								0	0	0	0.22377	1	26892	26892		14.838	6.0929	1		+		5525	20373	2739	2739	7772	7772					-0.010997388081932513
DKIDSKLRS	9	Unmodified	_DKIDSKLRS_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.313720703125	2	531.301113	1060.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.831	1	23.831	23.331	24.331	0								0	0	0	0.24066	1	3566	3566		9.3831	1.2276	1		+		5526	15579	2740	2740	7773	7773					0.059802265006510424
DKIHLKGLT	9	Unmodified	_DKIHLKGLT_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2854614257812	2	512.811116	1023.60768	0.021022	1.078E-05	-0.91428	-0.00046885	-0.89326	-0.00045807	512.8105049309154	52.168	0.27079	52.167	52.034	52.305	-0.00081253					12	9	2	0	0	0	0.25123	1	12212	12212		12.241	8.2963	1	113010			5527	6767	2741	2741	7774	7774					0.09682022231265819
DKIKANSKE	9	Unmodified	_DKIKANSKE_					0	0	0			REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7734375	2	516.787838	1031.56112	0.072676	3.7558E-05	-0.79536	-0.00041103	-0.72268	-0.00037347	516.7875996681748	24.522	0.22565	24.483	24.366	24.591	-0.038927					11	7	2	0	0	0	0.26612	1	3805	3805		13.906	0.86358	1	65586	+		5528	14284	2742	2742	7775	7775					0.04660537609311177
DKILSELVDLK	11	Unmodified	_DKILSELVDLK_					0	0	0			REV__DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant	REV__DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.8742065429688	2	636.874111	1271.73367	0.35443	0.00022573	0.39903	0.00025413	0.75346	0.00047986	636.8741357624978	70.476	0.46561	70.476	70.273	70.739	0					35	16	3	0	0	0	0.28319	1	17886	17886		32.898	17.649	1	298520	+		5529	13305	2743	2743	7776	7776					0.10867064226044931
DKILSELVDLK	11	Unmodified	_DKILSELVDLK_					0	0	0			REV__DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant	REV__DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.8739624023438	2	636.874111	1271.73367	0.6649	0.00042346	-0.35435	-0.00022568	0.31055	0.00019778	636.8738643670273	70.577	0.5582	70.553	70.275	70.833	-0.024872					35	19	3	0	0	0	0.32596	1	17882	17882		15.739	4.0983	1	295400	+		5530	13305	2743	2743	7777	7777					0.10867064226044931
DKILSELVDLK	11	Unmodified	_DKILSELVDLK_					0	0	0			REV__DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant	REV__DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	636.874111	1271.73367	0.58093	0.00036998	-0.012536	-7.9838E-06	0.56839	0.00036199	636.8740900680287	70.473	0.4481	70.534	70.351	70.8	0.060783	0.012851	-4.5704E-05	NaN	32.898	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331700	+		5531	13305	2743	2743							0.10867064226044931
DKKAIILVTIL	11	Unmodified	_DKKAIILVTIL_					0	0	0		ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	ENSG00000185899|ENST00000332690|TAS2R60	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.60821533203125	3	409.607596	1225.80096	0.43349	0.00017756	0.45951	0.00018822	0.89299	0.00036578	409.60777519612185	55.976	1.1855	56.046	55.216	56.402	0.070885					75	43	2	0	0	0	0.44088	1	13473	13473		5.8681	0.084707	1	558250			5532	7566	2744	2744	7778	7778					0.19709139227688866
DKKPSQSL	8	Unmodified	_DKKPSQSL_					0	0	0			REV__ENSG00000163092|ENST00000409195|XIRP2	REV__ENSG00000163092|ENST00000409195|XIRP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.76861572265625	2	451.750724	901.486896	0.0011064	4.9984E-07	0.059068	2.6684E-05	0.060174	2.7184E-05	451.750655525641	22.491	0.94551	22.491	22.252	23.197	0					72	32	3	0	0	0	0.34294	1	3279	3279		7.2892	2.96	1	355680	+		5533	17034	2745	2745	7779	7779					0.03221194517800541
DKLIQLRK	8	Unmodified	_DKLIQLRK_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.910888671875	2	507.326934	1012.63931	0.09662	4.9018E-05	-0.19472	-9.8784E-05	-0.098095	-4.9766E-05	507.3269122597805	17.853	0.44201	17.736	17.515	17.957	-0.11739					20	14	2	0	0	0	0.344	1	1812	1812		2.5775	0	1	19511	+		5534	15026	2746	2746	7780	7780					0.1335001498522388
DKLIQLRK	8	Unmodified	_DKLIQLRK_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.326934	1012.63931	0.2499	0.00012678	-0.5643	-0.00028629	-0.31441	-0.00015951	507.3265973133665	17.745	0.39152	17.745	17.507	17.898	0	0.0046257	-0.00031534	NaN	2.5775	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18089	+		5535	15026	2746	2746							0.1335001498522388
DKLKNQQK	8	Unmodified	_DKLKNQQK_					0	0	0			REV__nc|ENSG00000169282|Q14722-2|KCNAB1	REV__nc|ENSG00000169282|Q14722-2|KCNAB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.6715393066406	2	501.290548	1000.56654	0.10596	5.3118E-05	0.06057	3.0363E-05	0.16653	8.3481E-05	501.2908571044751	15.463	0.55862	15.463	15.257	15.816	0					26	18	2	0	0	0	0.34198	1	1041	1041		10.824	1.4408	1	63492	+		5536	17508	2747	2747	7781	7781					0.06628261191792717
DKLLFQEK	8	Unmodified	_DKLLFQEK_					0	0	0			REV__nc|ENSG00000130038|Q9BSW2-1|CRACR2A	REV__nc|ENSG00000130038|Q9BSW2-1|CRACR2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2349853515625	2	510.78985	1019.56515	0.41462	0.00021178	1.3488	0.00068893	1.7634	0.00090071	510.7906331456798	36.433	0.28913	36.516	36.362	36.651	0.082359					15	9	2	0	0	0	0.34039	1	7393	7393		10.824	1.4408	1	93787	+		5537	15438	2748	2748	7782	7782					0.056146271030456774
DKNYKIPSG	9	Unmodified	_DKNYKIPSG_					0	0	0			REV__ENSG00000083720|ENST00000196371|OXCT1	REV__ENSG00000083720|ENST00000196371|OXCT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2349853515625	2	511.269281	1020.52401	0.41934	0.00021439	1.759	0.00089931	2.1783	0.0011137	511.27042362454745	36.3	0.28166	36.382	36.308	36.59	0.082355					11	9	2	0	0	0	0.24848	1	7393	7393		9.3831	1.473	1	117920	+		5538	13937	2749	2749	7783	7783					0.014568660635632114
DKPFLSAWPSP	11	Unmodified	_DKPFLSAWPSP_					0	0	0		ENST00000400864.3_1_19:55236001-55309429:+|nuORF	ENST00000400864.3_1_19:55236001-55309429:+|nuORF	ENST00000400864.3_1_19:55236001-55309429:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.8983459472656	3	415.548518	1243.62372	0.072205	3.0005E-05	2.2117	0.00091907	2.2839	0.00094907	415.5496743190859	18.087	0.30755	17.97	17.757	18.065	-0.11739					17	10	2	0	0	0	0.33025	1	1856	1856		9.2438	1.7667	1	28531			5539	10187	2750	2750	7784	7784					0.011656836775046031
DKPKKHRNK	9	Unmodified	_DKPKKHRNK_					0	0	0			REV__nc|ENSG00000141052|Q8IZQ8-2|MYOCD	REV__nc|ENSG00000141052|Q8IZQ8-2|MYOCD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8427734375	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.47	1	114.45	113.95	114.95	-0.019096								0	0	0	0.26334	1	29720	29720		2.0598	0	1		+		5540	16064	2751	2751	7785	7785					0.10422436476960684
DKRKLPLR	8	Unmodified	_DKRKLPLR_					0	0	0			REV__ENST00000521663.1_1_8:58193267-58194656:+|nuORF	REV__ENST00000521663.1_1_8:58193267-58194656:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7694091796875	2	513.33255	1024.65055	0.04825	2.4768E-05	-0.30596	-0.00015706	-0.25771	-0.00013229	513.3325045629812	16.323	0.3746	16.209	16.02	16.395	-0.11434					17	12	2	0	0	0	0.34272	1	1281	1281		7.9102	3.1541	1	33979	+		5541	21906	2752	2752	7786	7786					0.13920837079353987
DKRNRELHKRV	11	Unmodified	_DKRNRELHKRV_					0	0	0			REV__ENST00000531908.5_1_11:17095982-17097186:-|nuORF	REV__ENST00000531908.5_1_11:17095982-17097186:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.78814697265625	3	484.283169	1449.82768	0.37648	0.00018232	-1.8562	-0.00089892	-1.4797	-0.0007166	484.2818474062866	36.477	0.38722	36.559	36.398	36.785	0.082359					27	13	3	0	0	0	0.3322	1	7422	7422		1.2148	0	1	102060	+		5542	14679	2753	2753	7787	7787					0.12075640891521289
DKRYEKGSQ	9	Unmodified	_DKRYEKGSQ_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2713623046875	2	555.780544	1109.54654	0.38155	0.00021206	1.5652	0.00086989	1.9467	0.0010819	555.780552427582	30.414	0.55979	30.414	30.167	30.727	0					39	19	3	0	0	0	0.25706	1	5528	5528		6.7232	0	1	245360	+		5543	23129	2754	2754	7788	7788					-0.003855345388274145
DKSRARGMEEQ	11	Unmodified	_DKSRARGMEEQ_					0	0	0			REV__ENST00000540171.2_1_14:105147514-105147565:+|nuORF	REV__ENST00000540171.2_1_14:105147514-105147565:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2107849121094	3	436.210459	1305.60955	0.081564	3.5579E-05	0.25048	0.00010926	0.33204	0.00014484	436.21059050086626	20.847	1.3418	20.847	20.285	21.627	0					114	46	4	0	0	0	0.45422	2	2688	2688;2742		4.1166	1.4854	1	422820	+		5544	22110	2755	2755	7789;7790	7789					-0.031033368130692907
DKSWDLHTIF	10	Unmodified	_DKSWDLHTIF_					0	0	0			REV__ENST00000460939.5_1_11:62370516-62371529:-|nuORF	REV__ENST00000460939.5_1_11:62370516-62371529:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.5832214355469	3	421.211906	1260.61389	0.18757	7.9009E-05	4.3147	0.0018174	4.5022	0.0018964	421.2140743448069	46.764	0.21732	46.816	46.655	46.872	0.052574					9	7	2	0	0	0	0.31969	1	10549	10549		5.7834	0.73591	1	139930	+		5545	16469	2756	2756	7791	7791					-0.005995043278744561
DKTDEWNQK	9	Unmodified	_DKTDEWNQK_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.8108520507812	2	582.27001	1162.52547	0.38086	0.00022176	1.3562	0.00078965	1.737	0.0010114	582.2712417182584	53.161	0.51233	53.152	52.889	53.401	-0.0096054					31	18	2	0	0	0	0.25431	1	12583	12583		9.3831	2.0939	1	629790	+		5546	23129	2757	2757	7792	7792					-0.04929544638343941
DKTGKPISK	9	Unmodified	_DKTGKPISK_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.2870788574219	2	487.287474	972.560395	-0.079562	-3.8769E-05	-0.683	-0.00033282	-0.76257	-0.00037159	487.28705458568874	12.713	0.59351	12.713	12.332	12.925	0					32	19	2	0	0	0	0.22674	1	218	218		22.736	0	1	109790			5547	2196	2758	2758	7793	7793					0.07301742960282809
DKTKRRITNY	10	Unmodified	_DKTKRRITNY_					0	0	0			REV__nc|ENSG00000145715|P20936-2|RASA1	REV__nc|ENSG00000145715|P20936-2|RASA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.8646850585938	2	647.864943	1293.71533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.77	1	114.79	114.29	115.29	0.016708								0	0	0	0.38166	1	29841	29841		1.4819	0	1		+		5548	16300	2759	2759	7794	7794					0.08022367094713445
DKVMRWFQ	8	Unmodified	_DKVMRWFQ_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.8161010742188	2	555.281669	1108.54878	0.37748	0.00020961	0.098309	5.4589E-05	0.47579	0.0002642	555.2828599701204	38.033	0.531	38.123	38.011	38.542	0.090881					23	18	2	0	0	0	0.34131	1	7871	7871		12.532	0.89125	1	163640			5549	400	2760	2760	7795	7795					-0.0011477733469291707
DKVSVKKIN	9	Unmodified	_DKVSVKKIN_					0	0	0			REV__ENST00000447052.1_1_21:24762753-24763314:+|nuORF	REV__ENST00000447052.1_1_21:24762753-24763314:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2879028320312	2	515.816399	1029.61824	-0.022767	-1.1743E-05	-1.4517	-0.00074882	-1.4745	-0.00076056	515.8156563827215	12.21	0.65454	12.21	12.07	12.724	0					38	24	2	0	0	0	0.25526	1	185	185		7.9102	1.187	1	769260	+		5550	21086	2761	2761	7796	7796					0.10462004885721399
DKYHNWCF	8	Unmodified	_DKYHNWCF_					0	0	0			REV__ENSG00000131477|ENST00000253796|RAMP2	REV__ENSG00000131477|ENST00000253796|RAMP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7352294921875	2	556.734551	1111.45455	0.48744	0.00027138	0.33191	0.00018479	0.81936	0.00045616	556.7346855888466	86.752	1.1783	86.752	86.406	87.584	0					132	49	5	0	0	0	0.44569	1	22786	22786		7.2892	7.2892	1	1188600	+		5551	15519	2762	2762	7797	7797					-0.09671916156844418
DKYHSLNE	8	Unmodified	_DKYHSLNE_					0	0	0		nc|ENSG00000164304|Q8TC20-2|CAGE1;nc|ENSG00000164304|Q8TC20|CAGE1;nc|ENSG00000164304|Q8TC20-3|CAGE1;ENSG00000164304|ENST00000502583|CAGE1	nc|ENSG00000164304|Q8TC20-2|CAGE1	nc|ENSG00000164304|Q8TC20-2|CAGE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.30133056640625	2	503.235439	1004.45632	0.21842	0.00010992	0.5002	0.00025172	0.71862	0.00036163	503.2358463857538	18.23	0.67616	18.23	17.802	18.479	0					45	22	3	0	0	0	0.32099	1	1768	1768		25.399	8.2864	1	45750			5552	5824	2763	2763	7798	7798					-0.04572583867252433
DKYHSLNE	8	Unmodified	_DKYHSLNE_					0	0	0		nc|ENSG00000164304|Q8TC20-2|CAGE1;nc|ENSG00000164304|Q8TC20|CAGE1;nc|ENSG00000164304|Q8TC20-3|CAGE1;ENSG00000164304|ENST00000502583|CAGE1	nc|ENSG00000164304|Q8TC20-2|CAGE1	nc|ENSG00000164304|Q8TC20-2|CAGE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.7618103027344	2	503.235439	1004.45632	0.050121	2.5223E-05	0.5876	0.0002957	0.63772	0.00032093	503.2360688450601	18.343	0.63882	18.285	17.819	18.458	-0.058174					41	22	3	0	0	0	0.32099	1	1815	1815		25.399	9.5521	1	52643			5553	5824	2763	2763	7799	7799					-0.04572583867252433
DLAKNRLYQ	9	Unmodified	_DLAKNRLYQ_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3403930664062	2	560.809105	1119.60366	0.19391	0.00010875	-4.4088	-0.0024725	-4.2149	-0.0023638	561.3086968285648	93.063	0.25969	93.063	93.01	93.27	0					34	21	2	0	0	0	0.25323	1	24771	24771		10.074	2.7847	1	67920			5554	1805	2764	2764	7800	7800					0.04863932737544019
DLAKRSIL	8	Unmodified	_DLAKRSIL_					0	0	0		ENSG00000175189|ENST00000309668|INHBC	ENSG00000175189|ENST00000309668|INHBC	ENSG00000175189|ENST00000309668|INHBC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2848205566406	2	458.284734	914.554916	-0.129	-5.9118E-05	0.53455	0.00024498	0.40555	0.00018586	458.2848860489291	41.073	0.73546	41.073	40.768	41.504	0					73	26	4	0	0	0	0.077335	1	8840	8840		65.235	2.6623	1	3862500			5555	6844	2765	2765	7801	7801					0.09422064168484212
DLAPPSLV	8	Unmodified	_DLAPPSLV_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.231689453125	2	406.231636	810.448719	-0.20093	-8.1626E-05	0.66336	0.00026948	0.46243	0.00018785	406.2318150071387	52.129	1.6251	52.128	51.631	53.256	-0.00080872					130	59	3	0	0	0	0.2157	1	12234	12234		40.449	2.2974	1	948660	+		5556	18931	2766	2766	7802	7802					0.035913086031428065
DLAPYLPSV	9	Unmodified	_DLAPYLPSV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.79998779296875	2	487.7633	973.512048	0.085818	4.1859E-05	0.38568	0.00018812	0.47149	0.00022998	487.7633805755841	81.784	0.19183	81.853	81.758	81.95	0.068993					12	8	2	0	0	0	0.25066	1	21339	21339		11.64	0.81637	1	60863			5557	1349	2767	2767	7803	7803					0.024232493203726335
DLAQITTFWG	10	Unmodified	_DLAQITTFWG_					0	0	0		ENSG00000082196|ENST00000382065|C1QTNF3	ENSG00000082196|ENST00000382065|C1QTNF3	ENSG00000082196|ENST00000382065|C1QTNF3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2937622070312	2	576.290214	1150.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.35	1	114.37	113.87	114.87	0.016708								0	0	0	0.37869	1	29738	29738		2.7352	0.43246	1				5558	1194	2768	2768	7804	7804					-0.00338578247942678
DLARQTASV	9	Unmodified	_DLARQTASV_					0	0	0		ENSG00000105641|ENST00000222248|SLC5A5	ENSG00000105641|ENST00000222248|SLC5A5	ENSG00000105641|ENST00000222248|SLC5A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7585754394531	2	480.759081	959.503609	0.018309	8.802E-06	-0.56503	-0.00027164	-0.54672	-0.00026284	480.7587065251557	29.765	0.70293	29.778	29.564	30.267	0.013475					60	23	4	0	0	0	0.23612	1	5423	5423		18.373	0	1	537530			5559	2001	2769	2769	7805	7805					0.022236954037680334
DLCLLELLPY	10	Unmodified	_DLCLLELLPY_					0	0	0			REV__ENSG00000181961|ENST00000314721|OR4A16	REV__ENSG00000181961|ENST00000314721|OR4A16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.802978515625	2	596.320125	1190.6257	0.25944	0.00015471	0.15055	8.9777E-05	0.40999	0.00024448	596.3206543275656	29.183	1.3868	29.196	28.789	30.176	0.013475					153	48	6	0	0	0	0.38515	1	5315	5315		6.2058	0	1	6434100	+		5560	18173	2770	2770	7806	7806					0.03800976371121578
DLDGVVELL	9	Unmodified	_DLDGVVELL_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7646179199219	2	486.76604	971.517527	0.072472	3.5277E-05	-0.44026	-0.0002143	-0.36779	-0.00017903	486.76484986505693	18.111	0.63439	18.053	17.738	18.372	-0.058174					46	22	3	0	0	0	0.31038	1	1823	1823		7.2892	0	1	110600	+		5561	23069	2771	2771	7807	7807					0.030629281121946406
DLDPFGPR	8	Unmodified	_DLDPFGPR_					0	0	0		ENSG00000125818|ENST00000335877|PSMF1;ENST00000484891.1_1_20:1115545-1145721:+|nuORF	ENSG00000125818|ENST00000335877|PSMF1	ENSG00000125818|ENST00000335877|PSMF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.27923583984375	2	458.729792	915.445031	0.13922	6.3864E-05	-0.24353	-0.00011171	-0.10431	-4.7849E-05	458.72957744995904	29.3	0.51917	29.313	29.134	29.654	0.012266					37	17	3	0	0	0	0.33245	1	5270	5270		8.5933	8.5933	1	121970			5562	3232	2772	2772	7808	7808					-0.016073611707156488
DLDPFGPR	8	Unmodified	_DLDPFGPR_					0	0	0		ENSG00000125818|ENST00000335877|PSMF1;ENST00000484891.1_1_20:1115545-1145721:+|nuORF	ENSG00000125818|ENST00000335877|PSMF1	ENSG00000125818|ENST00000335877|PSMF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	458.729792	915.445031	-0.015287	-7.0125E-06	0.037659	1.7276E-05	0.022373	1.0263E-05	458.729720416461	29.423	0.46096	29.436	29.192	29.653	0.013474	0.05227	0.00022374	NaN	8.5933	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148940			5563	3232	2772	2772							-0.016073611707156488
DLDRQITYHDS	11	Unmodified	_DLDRQITYHDS_					0	0	0			REV__ENST00000511682.1_1_4:169819766-169825111:+|nuORF	REV__ENST00000511682.1_1_4:169819766-169825111:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.25732421875	3	454.880996	1361.62116	0.23301	0.00010599	-1.2902	-0.00058689	-1.0572	-0.0004809	454.88078164053496	29.969	0.36966	29.981	29.746	30.116	0.012264					17	12	2	0	0	0	0.33277	1	5442	5442		1.4551	0	1	118230	+		5564	15400	2773	2773	7809	7809					-0.045188165181116347
DLDTTQVWKL	10	Unmodified	_DLDTTQVWKL_					0	0	0			REV__ENSG00000185158|ENST00000543378|LRRC37B	REV__ENSG00000185158|ENST00000543378|LRRC37B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.88385009765625	3	406.883677	1217.6292	0.17522	7.1295E-05	0.54413	0.0002214	0.71935	0.00029269	406.8838907458729	20.799	1.2934	20.746	20.448	21.741	-0.052912					160	45	6	0	0	0	0.38952	1	2707	2707		5.4027	0	1	858420	+		5565	18360	2774	2774	7810	7810					0.029093624693359743
DLEKYRAF	8	Unmodified	_DLEKYRAF_					0	0	0			REV__ENST00000454079.5_1_3:50099373-50114563:+|nuORF	REV__ENST00000454079.5_1_3:50099373-50114563:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.81640625	2	521.271824	1040.5291	0.59299	0.00030911	-1.3056	-0.00068058	-0.71263	-0.00037147	521.2711878444999	45.571	0.53712	45.631	45.282	45.819	0.059834					32	18	2	0	0	0	0.34039	1	10138	10138		15.847	1.0089	1	318740	+		5566	13332	2775	2775	7811	7811					0.010451699261693648
DLEVAEDPM	9	Unmodified	_DLEVAEDPM_					0	0	0		ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.72412109375	2	509.723515	1017.43248	0.52754	0.0002689	0.45439	0.00023161	0.98192	0.00050051	509.72359047249387	85.253	0.51017	85.253	85.069	85.579	0					39	19	3	0	0	0	0.24581	1	22404	22404		16.942	4.4107	1	222020			5567	2828	2776	2776	7812	7812					-0.07554185415926895
DLEVAEDPM	9	Unmodified	_DLEVAEDPM_					0	0	0		ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.72369384765625	2	509.723515	1017.43248	0.46785	0.00023848	0.41679	0.00021245	0.88464	0.00045092	509.7236166130628	85.185	0.59386	85.266	85.021	85.615	0.080887					38	22	3	0	0	0	0.25314	1	22405	22405		15.847	3.3156	1	187160			5568	2828	2776	2776	7813	7813					-0.07554185415926895
DLEVAEDPM	9	Unmodified	_DLEVAEDPM_					0	0	0		ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7235412597656	2	509.723515	1017.43248	0.47731	0.0002433	0.12742	6.4947E-05	0.60472	0.00030824	509.72357085209285	85.254	0.51929	85.241	85.036	85.555	-0.01284					31	19	2	0	0	0	0.25314	1	22408	22408		15.847	3.3156	1	181170			5569	2828	2776	2776	7814	7814					-0.07554185415926895
DLEYLLTTF	9	Unmodified	_DLEYLLTTF_					0	0	0			REV__nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	REV__nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2962036132812	2	557.786973	1113.55939	0.25969	0.00014485	0.32641	0.00018207	0.5861	0.00032692	557.7869361038269	81.409	0.42547	81.385	81.138	81.564	-0.02404					42	18	3	0	0	0	0.25066	1	21133	21133		11.64	0.81637	1	146210	+		5570	17831	2777	2777	7815	7815					0.007154838006954378
DLEYLLTTF	9	Unmodified	_DLEYLLTTF_					0	0	0			REV__nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	REV__nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	557.786973	1113.55939	0.042239	2.356E-05	0.2427	0.00013538	0.28494	0.00015894	557.786941471776	81.274	0.52859	81.343	81.053	81.582	0.068985	-0.021127	-4.9467E-05	NaN	11.64	56	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174100	+		5571	17831	2777	2777							0.007154838006954378
DLFGHIIF	8	Unmodified	_DLFGHIIF_					0	0	0			REV__nc|ENSG00000266200|P54317|PNLIPRP2	REV__nc|ENSG00000266200|P54317|PNLIPRP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.3133850097656	2	481.260728	960.506903	0.16802	8.0863E-05	0.47085	0.0002266	0.63887	0.00030746	481.26088082804216	62.026	1.1303	62.026	61.677	62.807	0					72	41	3	0	0	0	0.33245	1	15262	15262		19.439	0	1	406150	+		5572	23230	2778	2778	7816	7816					0.02506990248434704
DLFGHIIF	8	Unmodified	_DLFGHIIF_					0	0	0			REV__nc|ENSG00000266200|P54317|PNLIPRP2	REV__nc|ENSG00000266200|P54317|PNLIPRP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.3133239746094	2	481.260728	960.506903	0.14952	7.1958E-05	0.35651	0.00017157	0.50603	0.00024353	481.26086573691447	62.001	1.2993	61.992	61.613	62.913	-0.0085526					70	47	2	0	0	0	0.31375	1	15241	15241		26.341	0	1	533270	+		5573	23230	2778	2778	7817	7817					0.02506990248434704
DLFGNLTVKK	10	Unmodified	_DLFGNLTVKK_					0	0	0			REV__nc|ENSG00000134769|Q9Y4J8-15|DTNA	REV__nc|ENSG00000134769|Q9Y4J8-15|DTNA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2623291015625	2	567.829506	1133.64446	-0.077249	-4.3864E-05	2.6204	0.0014879	2.5431	0.001444	567.8308031398491	97.745	0.28598	97.745	97.62	97.906	0					50	30	2	0	0	0	0.31691	1	26179	26179		9.3831	3.1773	1	95443	+		5574	22995	2779	2779	7818	7818					0.08298274057187882
DLFRLWERHRL	11	Unmodified	_DLFRLWERHRL_					0	0	0			REV__ENST00000342081.7_1_4:74477471-74486347:-|nuORF	REV__ENST00000342081.7_1_4:74477471-74486347:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8092041015625	3	514.288031	1539.84226	0.058062	2.9861E-05	-1.0334	-0.00053147	-0.97534	-0.00050161	514.2875948967916	46.575	0.50145	46.629	46.326	46.827	0.054371					47	17	4	0	0	0	0.3331	1	10409	10409		2.2527	1.0379	1	1052100	+		5575	20119	2780	2780	7819	7819					0.09393713039685281
DLFRLWERHRL	11	Unmodified	_DLFRLWERHRL_					0	0	0			REV__ENST00000342081.7_1_4:74477471-74486347:-|nuORF	REV__ENST00000342081.7_1_4:74477471-74486347:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	514.288031	1539.84226	0.34247	0.00017613	-1.297	-0.00066704	-0.95453	-0.0004909	514.2872421460635	46.66	0.59422	46.66	46.43	47.024	0	0.045132	-5.2021E-05	NaN	2.2527	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1161100	+		5576	20119	2780	2780							0.09393713039685281
DLFRLWERHRL	11	Unmodified	_DLFRLWERHRL_					0	0	0			REV__ENST00000342081.7_1_4:74477471-74486347:-|nuORF	REV__ENST00000342081.7_1_4:74477471-74486347:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	514.288031	1539.84226	0.36044	0.00018537	-1.5487	-0.00079646	-1.1882	-0.00061109	514.287214237697	46.503	0.56441	46.556	46.252	46.817	0.052574	-0.059285	-0.0004403	NaN	2.2527	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1050800	+		5577	20119	2780	2780							0.09393713039685281
DLFWDVAII	9	Unmodified	_DLFWDVAII_					0	0	0			REV__ENSG00000105143|ENST00000594383|SLC1A6	REV__ENSG00000105143|ENST00000594383|SLC1A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2922973632812	2	546.292225	1090.5699	0.36974	0.00020199	-0.15004	-8.1964E-05	0.2197	0.00012002	546.2921715034036	61.217	2.3369	61.217	61.052	63.389	0					130	87	2	0	0	0	0.18943	1	15481	15481		30.225	0.38423	1	1028700	+		5578	14440	2781	2781	7820	7820					0.028235112458105505
DLGALRLL	8	Unmodified	_DLGALRLL_					0	0	0			REV__ENSG00000146197|ENST00000274938|SCUBE3	REV__ENSG00000146197|ENST00000274938|SCUBE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.77410888671875	2	435.774003	869.533452	0.14424	6.2858E-05	-0.19304	-8.4123E-05	-0.048799	-2.1265E-05	435.7739090009179	56.694	0.49341	56.773	56.575	57.068	0.078674					28	18	2	0	0	0	0.3671	1	13665	13665		23.148	0	1	283440	+		5579	16333	2782	2782	7821	7821					0.09346679139753178
DLGHGSSPPR	10	Unmodified	_DLGHGSSPPR_					0	0	0		ENST00000420022.3_1_19:50193401-50193710:+|nuORF	ENST00000420022.3_1_19:50193401-50193710:+|nuORF	ENST00000420022.3_1_19:50193401-50193710:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.7543640136719	2	511.75433	1021.49411	-0.14999	-7.676E-05	0.069666	3.5652E-05	-0.080327	-4.1108E-05	511.75431249989424	13.455	0.81381	13.388	13.134	13.947	-0.067496					81	28	5	0	0	0	0.37751	1	495	495		7.609	0	1	773780			5580	10356	2783	2783	7822	7822					-0.015780728817617273
DLGLEPKR	8	Unmodified	_DLGLEPKR_					0	0	0		ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.2662658691406	2	464.266542	926.51853	-0.19024	-8.8321E-05	1.4731	0.00068392	1.2829	0.0005956	464.26603471606694	27.246	0.84909	27.224	26.985	27.834	-0.02141					40	29	2	0	0	0	0.45431	1	4633	4633		4.3292	0	1	73114			5581	4777	2784	2784	7823	7823					0.052331872717559236
DLHAVMSH	8	Unmodified	_DLHAVMSH_					0	0	0			REV__ENSG00000090372|ENST00000263280|STRN4;REV__nc|ENSG00000196792|Q13033-2|STRN3	REV__nc|ENSG00000196792|Q13033-2|STRN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2261657714844	2	455.215995	908.417436	0.32212	0.00014664	1.5502	0.00070565	1.8723	0.00085229	455.21615902119134	82.859	0.86063	82.859	82.287	83.148	0					58	32	3	0	0	0	0.45169	1	21639	21639		5.2307	0	1	294790	+		5582	14040;18687	2785	2785	7824	7824					-0.04043587702597051
DLHAVMSH	8	Unmodified	_DLHAVMSH_					0	0	0			REV__ENSG00000090372|ENST00000263280|STRN4;REV__nc|ENSG00000196792|Q13033-2|STRN3	REV__nc|ENSG00000196792|Q13033-2|STRN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2264709472656	2	455.215995	908.417436	0.30308	0.00013797	0.48926	0.00022272	0.79234	0.00036069	455.2161752757652	82.898	0.58054	82.878	82.646	83.226	-0.020584					39	22	2	0	0	0	0.45169	1	21630	21630		5.2307	0	1	339760	+		5583	14040;18687	2785	2785	7825	7825					-0.04043587702597051
DLHCRRGTF	9	Unmodified	_DLHCRRGTF_					0	0	0			REV__nc|ENSG00000162804|Q8TER0-5|SNED1	REV__nc|ENSG00000162804|Q8TER0-5|SNED1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7899169921875	2	552.772	1103.52945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.067	1	56.048	55.548	56.548	-0.019081								0	0	0	0.19534	1	13428	13428		24.021	1.2843	1		+		5584	17012	2786	2786	7826	7826					-0.018177336256030685
DLHEILVY	8	Unmodified	_DLHEILVY_					0	0	0			REV__ENSG00000187889|ENST00000343433|FYB2	REV__ENSG00000187889|ENST00000343433|FYB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2568359375	2	501.26875	1000.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.652	1	66.736	66.236	67.236	0.083832								0	0	0	0.36336	1	16687	16687		8.5933	0.43775	1		+		5585	18531	2787	2787	7827	7827					0.022706516946755073
DLHILMAQR	9	Unmodified	_DLHILMAQR_					0	0	0		ENST00000494174.5_1_20:32245637-32248074:-|nuORF;ENST00000485399.5_1_20:32245637-32248074:-|nuORF;ENST00000606525.5_1_20:32245637-32250053:-|nuORF;ENST00000483813.5_1_20:32245637-32250053:-|nuORF;nc|ENSG00000125967|Q96P71-2|NECAB3;ENSG00000125967|ENST00000246190|NECAB3	ENST00000494174.5_1_20:32245637-32248074:-|nuORF	ENST00000494174.5_1_20:32245637-32248074:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3228759765625	2	548.800226	1095.5859	-0.29027	-0.0001593	0.54597	0.00029963	0.25569	0.00014032	548.8000827425042	35.203	0.46313	35.278	34.99	35.454	0.075306					26	16	2	0	0	0	0.2451	1	7029	7029		15.847	4.2069	1	118100			5586	3249	2788	2788	7828	7828					0.041928942110416756
DLHILMAQR	9	Unmodified	_DLHILMAQR_					0	0	0		ENST00000494174.5_1_20:32245637-32248074:-|nuORF;ENST00000485399.5_1_20:32245637-32248074:-|nuORF;ENST00000606525.5_1_20:32245637-32250053:-|nuORF;ENST00000483813.5_1_20:32245637-32250053:-|nuORF;nc|ENSG00000125967|Q96P71-2|NECAB3;ENSG00000125967|ENST00000246190|NECAB3	ENST00000494174.5_1_20:32245637-32248074:-|nuORF	ENST00000494174.5_1_20:32245637-32248074:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3228759765625	2	548.800226	1095.5859	-0.3803	-0.00020871	1.2369	0.0006788	0.85658	0.00047009	548.8005177398016	35.116	0.40873	35.193	35.033	35.441	0.077377					24	14	2	0	0	0	0.25202	1	7019	7019		10.824	3.5347	1	108930			5587	3249	2788	2788	7829	7829					0.041928942110416756
DLHLRLRPN	9	Unmodified	_DLHLRLRPN_					0	0	0		ENSG00000087116|ENST00000251582|ADAMTS2;nc|ENSG00000087116|O95450-2|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.26171875	2	567.330539	1132.64652	-0.097645	-5.5397E-05	-1.5901	-0.00090209	-1.6877	-0.00095748	567.3295792411368	98.22	0.078018	98.22	98.174	98.252	0					12	8	2	0	0	0	0.25938	1	26278	26278		4.3292	0	1	107540			5588	1297	2789	2789	7830	7830					0.08550747585650242
DLIFYTWFL	9	Unmodified	_DLIFYTWFL_					0	0	0			REV__nc|ENSG00000067177|P46020-3|PHKA1	REV__nc|ENSG00000067177|P46020-3|PHKA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2190246582031	3	406.546226	1216.61685	0.36035	0.0001465	-0.98434	-0.00040018	-0.62399	-0.00025368	406.5456472750734	36.685	0.52398	36.778	36.536	37.06	0.093014					27	18	2	0	0	0	0.24787	1	7536	7536		10.8	4.1691	1	135600	+		5589	13686	2790	2790	7831	7831					0.017203707969201787
DLIGQALIAGF	11	Unmodified	_DLIGQALIAGF_					0	0	0			REV__nc|ENSG00000173692|Q99460-2|PSMD1	REV__nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8360595703125	2	559.316232	1116.61791	0.27094	0.00015154	-1.239	-0.00069298	-0.96803	-0.00054144	559.3157974238129	66.976	0.59972	66.976	66.768	67.368	0					31	20	2	0	0	0	0.32667	1	16751	16751		13.042	4.8869	1	171330	+		5590	23089	2791	2791	7832	7832					0.06426585165854704
DLIRLVLVYY	10	Unmodified	_DLIRLVLVYY_					0	0	0			REV__ENST00000367287.4_1_1:201939235-201939328:+|nuORF	REV__ENST00000367287.4_1_1:201939235-201939328:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.377685546875	2	633.876456	1265.73836	0.19437	0.0001232	-4.0984	-0.0025979	-3.904	-0.0024747	633.8715454238442	112.96	0.6295	112.94	112.82	113.45	-0.017311					112	77	2	0	0	0	0.41642	1	29387	29387		0.45834	0.057624	1	49706	+		5591	20308	2792	2792	7833	7833					0.1161199315945396
DLITWSIV	8	Unmodified	_DLITWSIV_					0	0	0			REV__nc|ENSG00000120156|Q02763-3|TEK	REV__nc|ENSG00000120156|Q02763-3|TEK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.76611328125	2	473.765843	945.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.484	1	76.484	75.984	76.984	0								0	0	0	0.36336	1	19698	19698		8.5933	0	1		+		5592	15078	2793	2793	7834	7834					0.04219553182997515
DLKCARCF	8	Unmodified	_DLKCARCF_					0	0	0		ENST00000393599.2_1_19:10677298-10677478:-|nuORF	ENST00000393599.2_1_19:10677298-10677478:-|nuORF	ENST00000393599.2_1_19:10677298-10677478:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.27630615234375	2	478.228048	954.441542	0.35136	0.00016803	1.0732	0.00051322	1.4245	0.00068125	478.2281355910243	64.728	0.48135	64.718	64.443	64.924	-0.0095291					25	16	2	0	0	0	0.3366	1	16108	16108		12.532	5.2423	1	122740			5593	10054	2794	2794	7835	7835					-0.037500705405818735
DLKEELRDCL	10	Unmodified	_DLKEELRDCL_					0	0	0		ENSG00000215305|ENST00000380445|VPS16;nc|ENSG00000215305|Q9H269-2|VPS16;ENST00000453689.5_3_20:2821420-2841138:+|nuORF	ENSG00000215305|ENST00000380445|VPS16	ENSG00000215305|ENST00000380445|VPS16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.568115234375	3	411.876306	1232.60709	0.23281	9.5887E-05	0.41547	0.00017112	0.64827	0.00026701	411.8764783748935	47.344	0.58354	47.344	47.024	47.608	0					41	20	3	0	0	0	0.3179	1	10798	10798		5.7834	0.38072	1	409170			5594	8406	2795	2795	7836	7836					8.814729267214716E-05
DLKLKKLLE	9	Unmodified	_DLKLKKLLE_					0	0	0		nc|ENSG00000115504|Q8NDI1|EHBP1;ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1	nc|ENSG00000115504|Q8NDI1|EHBP1	nc|ENSG00000115504|Q8NDI1|EHBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.75	2	550.357899	1098.70125	0.46135	0.00025391	0.60333	0.00033205	1.0647	0.00058596	550.3582093648045	57.159	0.40607	57.237	56.959	57.365	0.078674					20	14	2	0	0	0	0.25202	1	13729	13729		10.824	0	1	231830			5595	12662	2796	2796	7837	7837					0.15584321613710017
DLKNYHKLHW	10	Unmodified	_DLKNYHKLHW_					0	0	0		nc|ENSG00000118690|Q8NEN0-2|ARMC2;ENSG00000118690|ENST00000392644|ARMC2	nc|ENSG00000118690|Q8NEN0-2|ARMC2	nc|ENSG00000118690|Q8NEN0-2|ARMC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.73809814453125	3	451.906928	1352.69895	-0.015402	-6.9602E-06	-0.20883	-9.4371E-05	-0.22423	-0.00010133	452.23990580401824	18.11	1.0691	17.992	17.289	18.358	-0.11739					48	36	2	0	0	0	0.32068	1	1633	1633		3.5871	0.95582	1	40547			5596	2839	2797	2797	7838	7838					0.03671285928589896
DLKPARLLV	9	Unmodified	_DLKPARLLV_					0	0	0			REV__ENSG00000163006|ENST00000295124|CCDC138	REV__ENSG00000163006|ENST00000295124|CCDC138	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.279052734375	2	512.829309	1023.64407	0.38216	0.00019598	0.16564	8.4943E-05	0.5478	0.00028093	512.8293054644522	62.266	0.44115	62.266	62.138	62.58	0					21	16	2	0	0	0	0.24993	1	15426	15426		13.042	2.9685	1	132100	+		5597	17030	2798	2798	7839	7839					0.13318899128000794
DLKPFRSE	8	Unmodified	_DLKPFRSE_					0	0	0		ENST00000367545.7_1_6:144844224-144844278:+|nuORF	ENST00000367545.7_1_6:144844224-144844278:+|nuORF	ENST00000367545.7_1_6:144844224-144844278:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7498779296875	2	496.263999	990.513445	0.24997	0.00012405	0.9317	0.00046237	1.1817	0.00058642	496.2644324925823	69.559	0.23834	69.537	69.462	69.701	-0.022087					12	8	2	0	0	0	0.34039	1	17579	17579		10.824	0	1	85602			5598	9740	2799	2799	7840	7840					0.017808834091511017
DLKYSYRF	8	Unmodified	_DLKYSYRF_					0	0	0		nc|ENSG00000198719|O00548-2|DLL1;ENSG00000198719|ENST00000366756|DLL1	nc|ENSG00000198719|O00548-2|DLL1	nc|ENSG00000198719|O00548-2|DLL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.292236328125	2	546.279649	1090.54475	0.23848	0.00013028	-2.9294	-0.0016003	-2.6909	-0.00147	546.2778373021287	61.696	0.76405	61.687	61.244	62.008	-0.0085564					39	27	2	0	0	0	0.41097	1	15264	15264		18.135	1.1927	1	325280			5599	8108	2800	2800	7841	7841					0.003094564432331026
DLLEMDKNLQ	10	Unmodified	_DLLEMDKNLQ_					0	0	0		ENST00000465759.1_1_3:14693292-14708492:+|nuORF;CCDC174|p.S380Rfs*75|1|0.22|ENSG00000154781|chr3:14670927-14670942|GTCAGATCTCCGGGCT/-|frameshift_variant;ENSG00000154781|ENST00000383794|CCDC174	ENST00000465759.1_1_3:14693292-14708492:+|nuORF	ENST00000465759.1_1_3:14693292-14708492:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5691833496094	3	406.872673	1217.59619	-0.24479	-9.9599E-05	-3.807	-0.001549	-4.0518	-0.0016486	407.20454706665936	16.085	1.067	15.97	15.544	16.611	-0.11434					51	36	2	0	0	0	0.32054	1	1132	1132		1.5923	0.26264	1	41588			5600	93	2801	2801	7842	7842					-0.0039058764502897247
DLLFESAFL	9	Unmodified	_DLLFESAFL_					0	0	0		nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3195190429688	2	527.776408	1053.53826	0.90722	0.00047881	1.087	0.00057371	1.9942	0.0010525	527.7769869600463	50.688	1.13	50.705	50.383	51.513	0.016335					74	42	2	0	0	0	0.22596	1	11879	11879		21.747	4.6601	1	472520			5601	5067	2802	2802	7843	7843					0.01363518491848481
DLLGLEAEL	9	Unmodified	_DLLGLEAEL_					0	0	0		nc|ENSG00000100987|Q9NZR4-4|VSX1;nc|ENSG00000100987|Q9NZR4-6|VSX1;nc|ENSG00000100987|Q9NZR4-7|VSX1;nc|ENSG00000100987|Q9NZR4-2|VSX1;nc|ENSG00000100987|Q9NZR4-5|VSX1;nc|ENSG00000100987|Q9NZR4-8|VSX1;ENSG00000100987|ENST00000376709|VSX1;nc|ENSG00000100987|Q9NZR4-3|VSX1	nc|ENSG00000100987|Q9NZR4-4|VSX1	nc|ENSG00000100987|Q9NZR4-4|VSX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7645568847656	2	486.76604	971.517527	0.077276	3.7615E-05	-0.44282	-0.00021555	-0.36554	-0.00017793	486.764767931186	18.101	0.69341	17.983	17.631	18.325	-0.11739					52	23	3	0	0	0	0.31038	1	1825	1825		7.2892	0	1	123760			5602	1653	2803	2803	7844	7844					0.030629281121719032
DLLGLEAEL	9	Unmodified	_DLLGLEAEL_					0	0	0		nc|ENSG00000100987|Q9NZR4-4|VSX1;nc|ENSG00000100987|Q9NZR4-6|VSX1;nc|ENSG00000100987|Q9NZR4-7|VSX1;nc|ENSG00000100987|Q9NZR4-2|VSX1;nc|ENSG00000100987|Q9NZR4-5|VSX1;nc|ENSG00000100987|Q9NZR4-8|VSX1;ENSG00000100987|ENST00000376709|VSX1;nc|ENSG00000100987|Q9NZR4-3|VSX1	nc|ENSG00000100987|Q9NZR4-4|VSX1	nc|ENSG00000100987|Q9NZR4-4|VSX1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	486.76604	971.517527	0.072472	3.5277E-05	-0.44026	-0.0002143	-0.36779	-0.00017903	486.76484986505693	18.111	0.63439	18.053	17.738	18.372	-0.058174	0.055908	2.0763E-05	NaN	7.2892	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110600			5603	1653	2803	2803							0.030629281121719032
DLLGQLLPLK	10	Unmodified	_DLLGQLLPLK_					0	0	0			REV__ENST00000336824.8_1_3:172064117-172064219:+|nuORF	REV__ENST00000336824.8_1_3:172064117-172064219:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7697143554688	2	555.350074	1108.6856	0.23561	0.00013085	-0.2083	-0.00011568	0.027314	1.5169E-05	555.3499359817565	69.197	0.39185	69.197	68.977	69.369	0					23	13	2	0	0	0	0.31401	1	17501	17501		14.405	0.79051	1	156310	+		5604	20076	2804	2804	7845	7845					0.13560035096656975
DLLGQLLPLK	10	Unmodified	_DLLGQLLPLK_					0	0	0			REV__ENST00000336824.8_1_3:172064117-172064219:+|nuORF	REV__ENST00000336824.8_1_3:172064117-172064219:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7698364257812	2	555.350074	1108.6856	0.35235	0.00019568	-0.44233	-0.00024565	-0.089981	-4.9971E-05	555.3497794730772	69.169	0.38982	69.241	69.044	69.434	0.071938					24	13	2	0	0	0	0.31581	1	17485	17485		11.495	1.3441	1	168360	+		5605	20076	2804	2804	7846	7846					0.13560035096656975
DLLGQLLPLK	10	Unmodified	_DLLGQLLPLK_					0	0	0			REV__ENST00000336824.8_1_3:172064117-172064219:+|nuORF	REV__ENST00000336824.8_1_3:172064117-172064219:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7697143554688	2	555.350074	1108.6856	0.17947	9.967E-05	-0.30075	-0.00016702	-0.12128	-6.7352E-05	555.3498982350245	69.265	0.37572	69.243	69.059	69.435	-0.022087					20	12	2	0	0	0	0.31581	1	17496	17496		11.495	0.6952	1	123780	+		5606	20076	2804	2804	7847	7847					0.13560035096656975
DLLLHCQRT	9	Unmodified	_DLLLHCQRT_					0	0	0			REV__ENST00000521667.5_1_8:140743306-141301208:-|nuORF	REV__ENST00000521667.5_1_8:140743306-141301208:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3232421875	2	549.789858	1097.56516	0.025915	1.4248E-05	-2.3539	-0.0012941	-2.3279	-0.0012799	550.2899680071498	35.529	0.43134	35.529	35.144	35.575	0					22	15	2	0	0	0	0.2322	1	7105	7105		20.454	0	1	180870	+		5607	17396	2805	2805	7848	7848					0.020283038313891666
DLLLTSTVL	9	Unmodified	_DLLLTSTVL_					0	0	0		nc|ENSG00000120907|P35348-5|ADRA1A;nc|ENSG00000120907|P35348-7|ADRA1A;nc|ENSG00000120907|P35348-6|ADRA1A;nc|ENSG00000120907|P35348-8|ADRA1A;nc|ENSG00000120907|P35348-9|ADRA1A;nc|ENSG00000120907|P35348-3|ADRA1A;nc|ENSG00000120907|P35348-4|ADRA1A;ENSG00000120907|ENST00000380573|ADRA1A;nc|ENSG00000120907|P35348-2|ADRA1A	nc|ENSG00000120907|P35348-5|ADRA1A	nc|ENSG00000120907|P35348-5|ADRA1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7998046875	2	487.792058	973.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.002	1	89.001	88.501	89.501	-0.00080872								0	0	0	0.21726	1	23522	23522		16.942	1.0951	1				5608	2973	2806	2806	7849	7849					0.08172091525932501
DLLPHFLV	8	Unmodified	_DLLPHFLV_					0	0	0		nc|ENSG00000113763|Q6ZN44-2|UNC5A;ENSG00000113763|ENST00000329542|UNC5A	nc|ENSG00000113763|Q6ZN44-2|UNC5A	nc|ENSG00000113763|Q6ZN44-2|UNC5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.2764587402344	2	477.276378	952.538203	0.69015	0.00032939	-0.00081282	-3.8794E-07	0.68934	0.00032901	477.27610200707676	60.649	0.48648	60.64	60.431	60.918	-0.0094566					51	17	4	0	0	0	0.16192	1	14836	14836		49.669	9.2203	1	1131500			5609	2530	2807	2807	7850	7850					0.06003563282513369
DLLQLNNR	8	Unmodified	_DLLQLNNR_					0	0	0		ENSG00000132376|ENST00000421807|INPP5K;ENST00000574955.1_1_17:1413761-1417263:-|nuORF	ENSG00000132376|ENST00000421807|INPP5K	ENSG00000132376|ENST00000421807|INPP5K	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8010559082031	2	493.274898	984.535243	0.42101	0.00020768	-0.10332	-5.0965E-05	0.31769	0.00015671	493.2747555071399	29.563	0.58559	29.576	29.331	29.917	0.012266					36	19	3	0	0	0	0.34272	1	5254	5254		7.9102	0	1	243280			5610	3626	2808	2808	7851	7851					0.042356881577120475
DLLRIIEMERL	11	Unmodified	_DLLRIIEMERL_					0	0	0		nc|ENSG00000165325|Q05D60-2|DEUP1;ENSG00000165325|ENST00000298050|DEUP1	nc|ENSG00000165325|Q05D60-2|DEUP1	nc|ENSG00000165325|Q05D60-2|DEUP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7148742675781	3	467.602517	1399.78572	-0.10528	-4.9229E-05	2.0234	0.00094615	1.9181	0.00089692	467.60351617120233	18.423	0.17512	18.364	18.227	18.402	-0.058172					7	5	2	0	0	0	0.33334	1	1928	1928		1.2148	0.10508	1	23319			5611	5951	2809	2809	7852	7852					0.10181904368164396
DLLRRPLL	8	Unmodified	_DLLRRPLL_					0	0	0			REV__ENST00000229329.6_1_12:22218108-22218213:+|nuORF	REV__ENST00000229329.6_1_12:22218108-22218213:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.292236328125	2	498.321651	994.62875	0.32147	0.0001602	-0.088238	-4.3971E-05	0.23323	0.00011623	498.3214927591592	51.964	0.31498	51.964	51.836	52.151	0					21	11	2	0	0	0	0.34185	1	12158	12158		10.183	2.2732	1	167460	+		5612	19458	2810	2810	7853	7853					0.13122032330807087
DLLRRPLL	8	Unmodified	_DLLRRPLL_					0	0	0			REV__ENST00000229329.6_1_12:22218108-22218213:+|nuORF	REV__ENST00000229329.6_1_12:22218108-22218213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8139343261719	2	498.321651	994.62875	0.40685	0.00020274	-0.47749	-0.00023794	-0.070641	-3.5202E-05	498.32138216081506	52.006	0.38501	52.057	51.817	52.202	0.050575					21	13	2	0	0	0	0.43727	1	12198	12198		10.183	3.8293	1	135390	+		5613	19458	2810	2810	7854	7854					0.13122032330807087
DLLRRPLL	8	Unmodified	_DLLRRPLL_					0	0	0			REV__ENST00000229329.6_1_12:22218108-22218213:+|nuORF	REV__ENST00000229329.6_1_12:22218108-22218213:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.2922058105469	2	498.321651	994.62875	0.13381	6.6681E-05	0.2378	0.0001185	0.37161	0.00018518	498.32177697566453	52.095	0.42834	52.094	51.876	52.305	-0.00081253					22	15	2	0	0	0	0.34185	1	12171	12171		10.183	2.2732	1	177440	+		5614	19458	2810	2810	7855	7855					0.13122032330807087
DLLTWVKWR	9	Unmodified	_DLLTWVKWR_					0	0	0			REV__ENST00000522397.5_1_8:54882915-54899537:-|nuORF	REV__ENST00000522397.5_1_8:54882915-54899537:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.91912841796875	3	406.232752	1215.67643	0.11269	4.5779E-05	0.47814	0.00019424	0.59083	0.00024001	406.23230875753205	29.475	0.22492	29.475	29.355	29.58	0					10	7	2	0	0	0	0.259	1	5292	5292		5.2969	1.4206	1	76862	+		5615	21916	2811	2811	7856	7856					0.07721686530953775
DLLYCLKPDLL	11	Unmodified	_DLLYCLKPDLL_					0	0	0			REV__ENST00000479979.1_1_1:167409855-167487702:-|nuORF	REV__ENST00000479979.1_1_1:167409855-167487702:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.2713623046875	3	435.908947	1304.70501	0.095874	4.1792E-05	2.7364	0.0011928	2.8323	0.0012346	435.90986017395005	38.692	0.51915	38.79	38.465	38.984	0.097527					30	18	2	0	0	0	0.33263	1	8142	8142		3.8459	1.0026	1	196700	+		5616	18867	2812	2812	7857	7857					0.06484623325263783
DLMMSLIFFF	10	Unmodified	_DLMMSLIFFF_					0	0	0		ENST00000602503.1_1_1:23408727-23408946:+|nuORF	ENST00000602503.1_1_1:23408727-23408946:+|nuORF	ENST00000602503.1_1_1:23408727-23408946:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.8768310546875	3	421.876589	1262.60794	0.26699	0.00011264	-0.071527	-3.0176E-05	0.19546	8.2459E-05	422.21088401014083	48.224	0.73847	48.267	47.957	48.695	0.04332					74	27	4	0	0	0	0.36002	1	10987	10987		9.544	3.3521	1	1189400			5617	12266	2813	2813	7858	7858					-0.012860621553954843
DLNKCREQVD	10	Unmodified	_DLNKCREQVD_					0	0	0			REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.1949768066406	3	407.196038	1218.56629	-0.043613	-1.7759E-05	-1.6955	-0.00069038	-1.7391	-0.00070814	407.1953384972447	20.342	0.64147	20.342	20.157	20.798	0					34	22	2	0	0	0	0.40943	1	2511	2511		1.7423	0.52744	1	136430	+		5618	19348	2814	2814	7859	7859					-0.034255265903766485
DLNKRRGKF	9	Unmodified	_DLNKRRGKF_					0	0	0			REV__ENSG00000161714|ENST00000619929|PLCD3	REV__ENSG00000161714|ENST00000619929|PLCD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2615966796875	2	567.330539	1132.64652	-0.10552	-5.9866E-05	-1.4089	-0.00079933	-1.5145	-0.0008592	567.8314546804164	98.376	0.15703	98.376	98.316	98.473	0					22	17	2	0	0	0	0.25706	1	26348	26348		6.7232	2.7788	1	205700	+		5619	16950	2815	2815	7860	7860					0.0855074758567298
DLNKRRGKF	9	Unmodified	_DLNKRRGKF_					0	0	0			REV__ENSG00000161714|ENST00000619929|PLCD3	REV__ENSG00000161714|ENST00000619929|PLCD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2614135742188	2	567.330539	1132.64652	0.2044	0.00011596	-0.95711	-0.000543	-0.75271	-0.00042703	567.3296760797882	97.53	0.53226	97.6	97.295	97.827	0.070465					117	58	3	0	0	0	0.25526	1	26130	26130		7.9102	7.9102	1	115390	+		5620	16950	2815	2815	7861	7861					0.0855074758567298
DLNLHINKL	9	Unmodified	_DLNLHINKL_					0	0	0			REV__RBM8A|p.I99L|1|0.26|ENSG00000265241|chr1:145926529-145926529|T/G|missense_variant	REV__RBM8A|p.I99L|1|0.26|ENSG00000265241|chr1:145926529-145926529|T/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7421264648438	2	540.314023	1078.61349	0.46817	0.00025296	-0.28872	-0.000156	0.17946	9.6963E-05	540.3137858050101	59.135	0.66771	59.226	58.792	59.46	0.091301					35	23	2	0	0	0	0.24289	1	14410	14410		13.042	0	1	246530	+		5621	23296	2816	2816	7862	7862					0.0773312074295518
DLNRKDKF	8	Unmodified	_DLNRKDKF_					0	0	0		nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16	nc|ENSG00000175221|Q9Y2X0-5|MED16	nc|ENSG00000175221|Q9Y2X0-5|MED16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.784423828125	2	518.282723	1034.55089	0.43693	0.00022645	2.4986	0.001295	2.9355	0.0015214	518.2843642035191	33.524	0.69375	33.524	33.145	33.839	0					36	24	2	0	0	0	0.28088	1	6517	6517		39.957	5.8549	1	339350			5622	6849	2817	2817	7863	7863					0.03499974674764417
DLPCTCEFVE	10	Unmodified	_DLPCTCEFVE_					0	0	0		nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1;ENSG00000198885|ENST00000439118|ITPRIPL1;nc|ENSG00000198885|Q6GPH6-2|ITPRIPL1	nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1	nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.2520751953125	2	578.238475	1154.4624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.453	1	98.446	97.946	98.946	-0.0068283								0	0	0	0.34994	1	26379	26379		14.838	4.0143	1				5623	8150	2818	2818	7864	7864					-0.1086556974225914
DLPKGRETKE	10	Unmodified	_DLPKGRETKE_					0	0	0		ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1	ENSG00000134121|ENST00000256509|CHL1	ENSG00000134121|ENST00000256509|CHL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8336791992188	2	586.817127	1171.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.431	1	79.402	78.902	79.902	-0.028931								0	0	0	0.3629	1	20581	20581		9.3831	1.2276	1				5624	3757	2819	2819	7865	7865					0.04075594183814246
DLPLTIPK	8	Unmodified	_DLPLTIPK_					0	0	0			REV__ENST00000573134.1_1_18:2554662-2567215:-|nuORF	REV__ENST00000573134.1_1_18:2554662-2567215:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7774963378906	2	448.776211	895.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.763	1	32.817	32.317	33.317	0.054371								0	0	0	0.36161	1	6275	6275		9.3831	2.66	1		+		5625	14277	2820	2820	7866	7866					0.08592143562657384
DLPNFLIV	8	Unmodified	_DLPNFLIV_					0	0	0			REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7685546875	2	465.768386	929.522219	0.39886	0.00018578	0.52491	0.00024449	0.92378	0.00043027	465.7684023326307	83.374	0.83285	83.357	83.082	83.914	-0.01725					64	35	3	0	0	0	0.31617	1	21802	21802		14.838	0	1	686610	+		5626	16018	2821	2821	7867	7867					0.05463857045617715
DLPSLAADFVE	11	Unmodified	_DLPSLAADFVE_					0	0	0		ALB|p.Y435Tfs*14|1|0.19|ENSG00000163631|chr4:73417543-73417543|T/-|frameshift_variant;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-2|ALB	ALB|p.Y435Tfs*14|1|0.19|ENSG00000163631|chr4:73417543-73417543|T/-|frameshift_variant	ALB|p.Y435Tfs*14|1|0.19|ENSG00000163631|chr4:73417543-73417543|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3432006835938	2	588.792786	1175.57102	0.55283	0.0003255	0.39667	0.00023356	0.9495	0.00055906	588.7930982153812	86.782	0.50969	86.782	86.429	86.938	0					32	20	2	0	0	0	0.29252	1	22847	22847		28.495	19.111	1	193380		+	5627	26	2822	2822	7868	7868					-0.009743191759525871
DLPSLAADFVE	11	Unmodified	_DLPSLAADFVE_					0	0	0		ALB|p.Y435Tfs*14|1|0.19|ENSG00000163631|chr4:73417543-73417543|T/-|frameshift_variant;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-2|ALB	ALB|p.Y435Tfs*14|1|0.19|ENSG00000163631|chr4:73417543-73417543|T/-|frameshift_variant	ALB|p.Y435Tfs*14|1|0.19|ENSG00000163631|chr4:73417543-73417543|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3433227539062	2	588.792786	1175.57102	0.39491	0.00023252	0.44385	0.00026133	0.83875	0.00049385	588.7929467782565	86.611	0.47192	86.695	86.461	86.933	0.084251					36	19	3	0	0	0	0.24987	1	22803	22803		40.239	30.165	1	234160		+	5628	26	2822	2822	7869	7869					-0.009743191759525871
DLPSLAADFVE	11	Unmodified	_DLPSLAADFVE_					0	0	0		ALB|p.Y435Tfs*14|1|0.19|ENSG00000163631|chr4:73417543-73417543|T/-|frameshift_variant;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1;nc|ENSG00000163631|P02768-2|ALB	ALB|p.Y435Tfs*14|1|0.19|ENSG00000163631|chr4:73417543-73417543|T/-|frameshift_variant	ALB|p.Y435Tfs*14|1|0.19|ENSG00000163631|chr4:73417543-73417543|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.34326171875	2	588.792786	1175.57102	0.51718	0.00030451	0.11385	6.7034E-05	0.63103	0.00037155	588.7928476393688	86.705	0.63512	86.7	86.389	87.024	-0.0056229					36	24	3	0	0	0	0.25745	1	22802	22802		32.037	21.887	1	201520		+	5629	26	2822	2822	7870	7870					-0.009743191759525871
DLPSLYPSF	9	Unmodified	_DLPSLYPSF_					0	0	0		ENSG00000111670|ENST00000299314|GNPTAB;GNPTAB|p.D706Tfs*4|1|0.21|ENSG00000111670|chr12:101764802-101764802|T/-|frameshift_variant;ENST00000550352.1_1_12:102179766-102183828:-|nuORF;nc|ENSG00000111670|Q3T906-2|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.79736328125	2	519.760758	1037.50696	0.55571	0.00028884	-0.29987	-0.00015586	0.25584	0.00013298	519.7604128339289	84.814	0.57094	84.801	84.516	85.087	-0.01284					46	23	3	0	0	0	0.10135	1	22242	22242		52.268	0	1	295450			5630	2379	2823	2823	7871	7871					-0.010290545422321884
DLPTAPLYK	9	Unmodified	_DLPTAPLYK_					0	0	0		ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3389892578125	2	509.2844	1016.55425	0.27775	0.00014146	0.36177	0.00018425	0.63953	0.0003257	509.2842920121512	68.052	0.33682	68.036	67.838	68.175	-0.016296					12	11	2	0	0	0	0.23784	1	17081	17081		19.257	2.3147	1	77165			5631	6305	2824	2824	7872	7872					0.04663224728756177
DLPTSVSLSA	10	Unmodified	_DLPTSVSLSA_					0	0	0		ENST00000226230.7_1_17:26653793-26654375:+|nuORF	ENST00000226230.7_1_17:26653793-26654375:+|nuORF	ENST00000226230.7_1_17:26653793-26654375:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7715759277344	2	495.261122	988.507691	0.69121	0.00034233	1.1121	0.00055079	1.8033	0.00089312	495.26187688446055	77.419	0.080299	77.474	77.43	77.51	0.05542					4	2	2	0	0	0	0.31358	1	19967	19967		13.906	0	1	77371			5632	8847	2825	2825	7873	7873					0.012977401068155814
DLPVIDILKIE	11	Unmodified	_DLPVIDILKIE_					0	0	0		ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	ENSG00000164002|ENST00000415550|EXO5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3780517578125	2	634.379029	1266.7435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.76	1	111.74	111.24	112.24	-0.015625								0	0	0	0.37609	1	29073	29073		2.4985	0.65425	1				5633	5769	2826	2826	7874	7874					0.12080252231430677
DLQKDRYL	8	Unmodified	_DLQKDRYL_					0	0	0			REV__ENST00000478756.1_1_1:155580834-155581160:+|nuORF	REV__ENST00000478756.1_1_1:155580834-155581160:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8192138671875	2	525.782556	1049.55056	0.40561	0.00021326	0.64013	0.00033657	1.0457	0.00054983	526.2848265004367	49.511	0.55023	49.543	49.18	49.73	0.032043					25	19	2	0	0	0	0.32886	1	11315	11315		21.747	0	1	146310	+		5634	15268	2827	2827	7875	7875					0.027765549549030766
DLQNYILEKK	10	Unmodified	_DLQNYILEKK_					0	0	0		ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2561950683594	3	421.902961	1262.68705	-0.21126	-8.9132E-05	1.3586	0.0005732	1.1473	0.00048406	421.90383158425715	16.109	0.45321	16.109	15.842	16.295	0					19	15	2	0	0	0	0.30441	1	1178	1178		17.863	6.9642	1	36945			5635	3236	2828	2828	7876	7876					0.06621624394733772
DLQQLKKKP	9	Unmodified	_DLQQLKKKP_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7991943359375	2	549.337498	1096.66044	0.23078	0.00012678	-0.72512	-0.00039833	-0.49434	-0.00027156	549.3371722677878	14.82	0.25912	14.711	14.618	14.877	-0.10982					13	8	2	0	0	0	0.25938	1	884	884		4.3292	0.38484	1	48147			5636	3530	2829	2829	7877	7877					0.11597980294095578
DLRAQLQI	8	Unmodified	_DLRAQLQI_					0	0	0		ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2901611328125	2	478.779816	955.545079	0.39172	0.00018755	0.017342	8.303E-06	0.40906	0.00019585	478.77978243906705	45.509	0.58274	45.574	45.199	45.782	0.065048					31	21	2	0	0	0	0.35375	1	10187	10187		24.674	1.9376	1	206740			5637	1064	2830	2830	7878	7878					0.0655287616308442
DLRKALSL	8	Unmodified	_DLRKALSL_					0	0	0			REV__nc|ENSG00000119608|Q3B8N5|PROX2	REV__nc|ENSG00000119608|Q3B8N5|PROX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2847595214844	2	458.284734	914.554916	-0.129	-5.9118E-05	0.53455	0.00024498	0.40555	0.00018586	458.2848860489291	41.073	0.73546	41.073	40.768	41.504	0					73	26	4	0	0	0	0.32789	1	8905	8905		27.629	3.6082	1	3862500	+		5638	15048	2831	2831	7879	7879					0.09422064168484212
DLRKPRQN	8	Unmodified	_DLRKPRQN_					0	0	0			REV__ENSG00000166450|ENST00000389286|PRTG	REV__ENSG00000166450|ENST00000389286|PRTG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8026733398438	2	513.793789	1025.57303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.364	1	66.448	65.948	66.948	0.083832								0	0	0	0.34229	1	16599	16599		18.135	1.1927	1		+		5639	17324	2832	2832	7880	7880					0.06126199143204758
DLRLFVLC	8	Unmodified	_DLRLFVLC_					0	0	0			REV__ENST00000368039.2_1_1:160771850-160772378:+|nuORF	REV__ENST00000368039.2_1_1:160771850-160772378:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2648620605469	2	489.775688	977.536823	0.38385	0.000188	-0.40308	-0.00019742	-0.019231	-9.4189E-06	489.7755258768416	82.167	0.77911	82.143	81.715	82.494	-0.02404					48	30	2	0	0	0	0.41097	1	21428	21428		18.135	4.6271	1	416210	+		5640	20326	2833	2833	7881	7881					0.04715605922126542
DLRLSQLA	8	Unmodified	_DLRLSQLA_					0	0	0			REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.60015869140625	2	458.266542	914.51853	-0.24754	-0.00011344	0.79406	0.00036389	0.54652	0.00025045	458.2669514734952	13.084	0.36762	13.016	12.878	13.245	-0.067495					18	12	2	0	0	0	0.34367	1	376	376		4.3292	0	1	53806	+		5641	18983	2834	2834	7882	7882					0.05785187271771974
DLRLSQLA	8	Unmodified	_DLRLSQLA_					0	0	0			REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	458.266542	914.51853	-0.25816	-0.00011831	0.48184	0.00022081	0.22368	0.00010251	458.2665634263889	13.041	0.32684	13.041	12.874	13.2	0	0.017739	-0.00016935	NaN	4.3292	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47343	+		5642	18983	2834	2834							0.05785187271771974
DLRLSQLA	8	Unmodified	_DLRLSQLA_					0	0	0			REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	458.266542	914.51853	-0.21205	-9.7175E-05	0.77991	0.00035741	0.56786	0.00026023	458.26693398030187	13.113	0.40825	13.013	12.841	13.249	-0.099291	-0.010218	0.00010384	NaN	4.3292	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40654	+		5643	18983	2834	2834							0.05785187271771974
DLRRQVLV	8	Unmodified	_DLRRQVLV_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;ENST00000468571.1_7:111617053-111644151:-|nuORF;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3133239746094	2	499.808908	997.603263	0.21474	0.00010733	2.7166	0.0013578	2.9314	0.0014651	499.8087869712816	30.886	0.76676	30.914	30.584	31.351	0.027157					66	27	3	0	0	0	0.4419	1	5673	5673		8.5933	0	1	224320			5644	3371;10949	2835	2835	7883	7883					0.1043655780838435
DLRTNYIL	8	Unmodified	_DLRTNYIL_					0	0	0			REV__ENST00000461878.5_1_7:116502665-116528309:+|nuORF	REV__ENST00000461878.5_1_7:116502665-116528309:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2802429199219	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.32	1	92.32	91.82	92.82	0.00046539								0	0	0	0.35466	1	24543	24543		12.532	0.89125	1		+		5645	21228	2836	2836	7884	7884					0.04173456443231771
DLSEIRKMLNA	11	Unmodified	_DLSEIRKMLNA_					0	0	0		ENSG00000138468|ENST00000394095|SENP7;nc|ENSG00000138468|Q9BQF6-5|SENP7	ENSG00000138468|ENST00000394095|SENP7	ENSG00000138468|ENST00000394095|SENP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8866271972656	3	430.567583	1288.68092	-0.32722	-0.00014089	-0.72219	-0.00031095	-1.0494	-0.00045184	430.5676419370274	15.466	0.59347	15.402	15.186	15.779	-0.064413					53	19	4	0	0	0	0.40332	1	1003	1003		8.7518	2.8836	1	669330			5646	4155	2837	2837	7885	7885					0.048127828916221915
DLSEIRKMLNA	11	Unmodified	_DLSEIRKMLNA_					0	0	0		ENSG00000138468|ENST00000394095|SENP7;nc|ENSG00000138468|Q9BQF6-5|SENP7	ENSG00000138468|ENST00000394095|SENP7	ENSG00000138468|ENST00000394095|SENP7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	430.567583	1288.68092	-0.35376	-0.00015232	-0.82071	-0.00035337	-1.1745	-0.00050569	430.5676881376648	15.331	0.68823	15.331	15.127	15.816	0	-0.046469	-0.00011213	NaN	8.7518	61	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484990			5647	4155	2837	2837							0.048127828916221915
DLSEIRKMLNA	11	Unmodified	_DLSEIRKMLNA_					0	0	0		ENSG00000138468|ENST00000394095|SENP7;nc|ENSG00000138468|Q9BQF6-5|SENP7	ENSG00000138468|ENST00000394095|SENP7	ENSG00000138468|ENST00000394095|SENP7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	430.567583	1288.68092	-0.26017	-0.00011202	-0.6777	-0.00029179	-0.93787	-0.00040382	430.5676197608898	15.51	0.66513	15.4	15.121	15.786	-0.10982	0.022322	7.26E-05	NaN	8.7518	57	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	505840			5648	4155	2837	2837							0.048127828916221915
DLSELLSML	9	Unmodified	_DLSELLSML_					0	0	0			REV__ENSG00000148702|ENST00000351270|HABP2	REV__ENSG00000148702|ENST00000351270|HABP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2997741699219	2	510.767726	1019.5209	0.50751	0.00025922	1.9471	0.00099453	2.4546	0.0012538	510.768342224704	79.118	0.48696	79.118	78.879	79.366	0					37	20	3	0	0	0	0.21905	1	20436	20436		23.148	2.6948	1	192600	+		5649	16432	2838	2838	7886	7886					0.011918548945573093
DLSELLSML	9	Unmodified	_DLSELLSML_					0	0	0			REV__ENSG00000148702|ENST00000351270|HABP2	REV__ENSG00000148702|ENST00000351270|HABP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	510.767726	1019.5209	0.49093	0.00025075	1.8183	0.00092873	2.3092	0.0011795	510.76836998708313	79.118	0.57504	79.089	78.896	79.471	-0.028931	0.00076459	-7.7574E-05	NaN	23.148	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222340	+		5650	16432	2838	2838							0.011918548945573093
DLSLPLGRQV	10	Unmodified	_DLSLPLGRQV_					0	0	0		ENST00000491466.5_1_17:38175784-38176226:-|nuORF;nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24	ENST00000491466.5_1_17:38175784-38176226:-|nuORF	ENST00000491466.5_1_17:38175784-38176226:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.27734375	2	549.319306	1096.62406	0.083576	4.591E-05	-3.2617	-0.0017917	-3.1781	-0.0017458	549.3175016328096	13.994	0.21355	13.994	13.872	14.086	0					11	6	3	0	0	0	0.31629	1	589	589		10.074	0	1	55949			5651	402	2839	2839	7887	7887					0.0796110339738334
DLSLPLGRQV	10	Unmodified	_DLSLPLGRQV_					0	0	0		ENST00000491466.5_1_17:38175784-38176226:-|nuORF;nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24	ENST00000491466.5_1_17:38175784-38176226:-|nuORF	ENST00000491466.5_1_17:38175784-38176226:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.319306	1096.62406	0.10468	5.7504E-05	-1.9184	-0.0010538	-1.8138	-0.00099633	549.3183744702179	14.042	0.23695	13.976	13.861	14.098	-0.066068	-0.0091373	0.00070021	NaN	10.074	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62117			5652	402	2839	2839							0.0796110339738334
DLSNLVGKYF	10	Unmodified	_DLSNLVGKYF_					0	0	0		ENST00000592836.5_1_2:179402342-179403012:+|nuORF	ENST00000592836.5_1_2:179402342-179403012:+|nuORF	ENST00000592836.5_1_2:179402342-179403012:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.2953491210938	2	578.305864	1154.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.652	1	47.652	47.152	48.152	0								0	0	0	0.35216	1	10838	10838		13.906	0	1				5653	12203	2840	2840	7888	7888					0.02605994786199517
DLSQLWFREFF	11	Unmodified	_DLSQLWFREFF_					0	0	0		nc|ENSG00000273749|Q7L576-2|CYFIP1;ENSG00000273749|ENST00000617928|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	nc|ENSG00000273749|Q7L576-2|CYFIP1;ENSG00000273749|ENST00000617928|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2655944824219	3	496.58211	1486.7245	0.49079	0.00024372	-2.2854	-0.0011349	-1.7946	-0.00089118	496.5807959661664	30.214	0.55523	30.214	29.97	30.525	0					46	19	3	0	0	0	0.3331	1	5447	5447		2.2527	0.92309	1	287830			5654	8708;702;12995	2841	2841	7889	7889					0.0006071566033369891
DLTDRNIV	8	Unmodified	_DLTDRNIV_					0	0	0		ENSG00000162923|ENST00000414423|WDR26;ENST00000479727.1_1_1:224585697-224586694:-|nuORF;ENST00000486652.5_1_1:224577539-224589708:-|nuORF;nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26	ENSG00000162923|ENST00000414423|WDR26	ENSG00000162923|ENST00000414423|WDR26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7923583984375	2	473.253631	944.49271	0.015487	7.3293E-06	0.59374	0.00028099	0.60923	0.00028832	473.25420782566033	27.346	0.45707	27.325	27.13	27.587	-0.02141					22	15	2	0	0	0	0.3366	1	4668	4668		18.135	0	1	66936			5655	5630	2842	2842	7890	7890					0.01824293029483215
DLTTTCTL	8	Unmodified	_DLTTTCTL_					0	0	0			REV__nc|ENSG00000187098|O75030-10|MITF	REV__nc|ENSG00000187098|O75030-10|MITF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.2101135253906	2	434.210043	866.405534	-0.0112	-4.8632E-06	0.66124	0.00028712	0.65004	0.00028225	434.2102078485851	72.387	1.116	72.387	72.017	73.133	0					76	40	3	0	0	0	0.30517	2	18463	18416;18463		30.225	0	1	1161000	+		5656	18489	2843	2843	7891;7892	7892					-0.03301249236449166
DLTTTCTL	8	Unmodified	_DLTTTCTL_					0	0	0			REV__nc|ENSG00000187098|O75030-10|MITF	REV__nc|ENSG00000187098|O75030-10|MITF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.2102355957031	2	434.210043	866.405534	0.15876	6.8935E-05	0.51511	0.00022367	0.67387	0.0002926	434.21014204874757	72.339	0.97932	72.395	72.033	73.012	0.056572					81	35	4	0	0	0	0.3671	2	18431	18431;18481		23.148	0	1	953100	+		5657	18489	2843	2843	7893;7894	7893					-0.03301249236449166
DLTTTCTL	8	Unmodified	_DLTTTCTL_					0	0	0			REV__nc|ENSG00000187098|O75030-10|MITF	REV__nc|ENSG00000187098|O75030-10|MITF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	434.210043	866.405534	0.15876	6.8935E-05	0.51511	0.00022367	0.67387	0.0002926	434.21014204874757	72.339	0.97932	72.395	72.033	73.012	0.056572	0.0057312	-8.0602E-05	NaN	30.225	81	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	953100	+		5658	18489	2843	2843							-0.03301249236449166
DLTVLTEAR	9	Unmodified	_DLTVLTEAR_					0	0	0			REV__ENST00000479155.1_1_17:18137242-18138852:+|nuORF	REV__ENST00000479155.1_1_17:18137242-18138852:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.76251220703125	2	509.282389	1016.55022	0.40481	0.00020616	-1.0757	-0.00054783	-0.67089	-0.00034167	509.28181090715674	21.12	0.45087	21.067	20.835	21.286	-0.05291					16	15	2	0	0	0	0.25526	1	2716	2716		7.9102	0.62092	1	23132	+		5659	15538	2844	2844	7895	7895					0.042611352350377274
DLTWNLFTY	9	Unmodified	_DLTWNLFTY_					0	0	0		nc|ENSG00000292339|O95671-3|ASMTL;nc|ENSG00000292339|O95671-2|ASMTL;ENSG00000169093|ENST00000381317|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3235473632812	2	586.784764	1171.55498	0.40019	0.00023482	-0.47544	-0.00027898	-0.075249	-4.4155E-05	586.7850823508884	71.506	0.72507	71.506	71.292	72.017	0					45	25	3	0	0	0	0.23235	1	18142	18142		21.537	2.28	1	906720			5660	6327	2845	2845	7896	7896					-0.023939806221733306
DLVCFLQL	8	Unmodified	_DLVCFLQL_					0	0	0		nc|ENSG00000173166|Q70E73-5|RAPH1;nc|ENSG00000173166|Q70E73-2|RAPH1;nc|ENSG00000173166|Q70E73-8|RAPH1;nc|ENSG00000173166|Q70E73-7|RAPH1;nc|ENSG00000173166|Q70E73-4|RAPH1;nc|ENSG00000173166|Q70E73-3|RAPH1;nc|ENSG00000173166|Q70E73-9|RAPH1;nc|ENSG00000173166|Q70E73-6|RAPH1;ENSG00000173166|ENST00000319170|RAPH1	nc|ENSG00000173166|Q70E73-5|RAPH1	nc|ENSG00000173166|Q70E73-5|RAPH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7544250488281	2	475.754421	949.494289	0.28786	0.00013695	0.35509	0.00016894	0.64295	0.00030589	475.7543017135285	68.126	1.0856	68.107	67.836	68.921	-0.019157					77	38	3	0	0	0	0.25425	1	17095	17095		36.044	0	1	2588200			5661	6697	2846	2846	7897	7897					0.017522107938930276
DLVEKPHKF	9	Unmodified	_DLVEKPHKF_					0	0	0			REV__nc|ENSG00000241322|O95170-2|FBXW10B	REV__nc|ENSG00000241322|O95170-2|FBXW10B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.8091430664062	2	556.808574	1111.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.245	1	79.245	78.745	79.745	0								0	0	0	0.2362	1	20540	20540		10.824	2.0785	1		+		5662	17678	2847	2847	7898	7898					0.051257183686630015
DLVHELVQR	9	Unmodified	_DLVHELVQR_					0	0	0		ENSG00000183578|ENST00000637513|TNFAIP8L3;nc|ENSG00000183578|Q5GJ75|TNFAIP8L3	ENSG00000183578|ENST00000637513|TNFAIP8L3	ENSG00000183578|ENST00000637513|TNFAIP8L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.2680053710938	2	554.809105	1107.60366	0.16458	9.1313E-05	-0.4752	-0.00026364	-0.31061	-0.00017233	554.8088596280131	45.862	0.36875	45.922	45.703	46.072	0.059837					19	12	2	0	0	0	0.24993	1	10301	10301		8.7454	0	1	302680			5663	7379	2848	2848	7899	7899					0.0541593273756007
DLVKLVTGF	9	Unmodified	_DLVKLVTGF_					0	0	0			REV__ENSG00000258472|ENST00000531839|unknown	REV__ENSG00000258472|ENST00000531839|unknown	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.30413818359375	2	496.294768	990.574983	0.42606	0.00021145	-0.73391	-0.00036424	-0.30785	-0.00015279	496.2945386003725	72.795	0.38413	72.849	72.681	73.065	0.053833					20	13	2	0	0	0	0.28128	1	18624	18624		11.64	3.047	1	56565	+		5664	19270	2849	2849	7900	7900					0.07931815108440787
DLVMFVHAF	9	Unmodified	_DLVMFVHAF_					0	0	0			REV__SLC22A13|p.A77Rfs*28|1|0.11|ENSG00000172940|chr3:38266089-38266090|GC/-|frameshift_variant	REV__SLC22A13|p.A77Rfs*28|1|0.11|ENSG00000172940|chr3:38266089-38266090|GC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.30078125	2	539.773145	1077.53174	0.34881	0.00018828	-0.41977	-0.00022658	-0.070955	-3.83E-05	539.7729454568289	52.227	0.48614	52.226	51.954	52.44	-0.00081253					29	17	3	0	0	0	0.18943	1	12178	12178		11.64	11.64	1	355660	+		5665	17750	2850	2850	7901	7901					-0.003926979405150632
DLWIARPS	8	Unmodified	_DLWIARPS_					0	0	0			REV__nc|ENSG00000184949|F5H4B4-2|FAM227A	REV__nc|ENSG00000184949|F5H4B4-2|FAM227A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.27947998046875	2	479.261259	956.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.233	1	52.233	51.733	52.733	0								0	0	0	0.30279	1	12248	12248		28.487	3.813	1		+		5666	18343	2851	2851	7902	7902					0.027972046173204035
DLWLRQAL	8	Unmodified	_DLWLRQAL_					0	0	0		ENST00000270357.9_2_2:241508179-241513275:+|nuORF	ENST00000270357.9_2_2:241508179-241513275:+|nuORF	ENST00000270357.9_2_2:241508179-241513275:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.3046875	2	507.790184	1013.56581	0.75517	0.00038347	-0.33774	-0.0001715	0.41743	0.00021197	507.7897674946722	50.184	1.1497	50.229	49.721	50.871	0.044891					63	42	2	0	0	0	0.25425	1	11615	11615		36.044	5.8194	1	501970			5667	9079	2852	2852	7903	7903					0.05957466542747625
DLWRAQEVQ	9	Unmodified	_DLWRAQEVQ_					0	0	0			REV__KDM5C|p.H988Tfs*18|1|0.35|ENSG00000126012|chrX:53196705-53196705|G/-|frameshift_variant	REV__KDM5C|p.H988Tfs*18|1|0.35|ENSG00000126012|chrX:53196705-53196705|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2898559570312	2	572.790912	1143.56727	0.3416	0.00019567	0.86434	0.00049509	1.2059	0.00069075	572.7916077563475	71.337	0.29173	71.312	71.188	71.479	-0.024872					14	10	2	0	0	0	0.24688	1	18080	18080		10.074	0	1	191770	+		5668	15298	2853	2853	7904	7904					0.001230558408451543
DLWRAQEVQ	9	Unmodified	_DLWRAQEVQ_					0	0	0			REV__KDM5C|p.H988Tfs*18|1|0.35|ENSG00000126012|chrX:53196705-53196705|G/-|frameshift_variant	REV__KDM5C|p.H988Tfs*18|1|0.35|ENSG00000126012|chrX:53196705-53196705|G/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	572.790912	1143.56727	0.35862	0.00020541	0.11922	6.8289E-05	0.47784	0.0002737	572.7917165265922	70.877	0.1894	70.938	70.827	71.017	0.060783	-0.18712	-0.00066151	NaN	10.074	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193660	+		5669	15298	2853	2853							0.001230558408451543
DLYCGQCHFF	10	Unmodified	_DLYCGQCHFF_					0	0	0		chr2:124474882-124504292|118|12.59|0.12|6.75|+|2|CNTNAP5,CNTNAP5|2	chr2:124474882-124504292|118|12.59|0.12|6.75|+|2|CNTNAP5,CNTNAP5|2	chr2:124474882-124504292|118|12.59|0.12|6.75|+|2|CNTNAP5,CNTNAP5|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.85986328125	3	411.500293	1231.47905	0.67815	0.00027906	-0.71811	-0.0002955	-0.039964	-1.6445E-05	411.4999832215664	56.766	0.767	56.747	56.429	57.196	-0.019081					55	27	3	0	0	0	0.31847	1	13576	13576		3.5871	0	1	750880			5670	147	2854	2854	7905	7905					-0.12743024065639474
DLYCNVKY	8	Unmodified	_DLYCNVKY_					0	0	0			REV__PCDH20|p.I797Mfs*26|1|0.06|ENSG00000280165|chr13:61411708-61411708|A/-|frameshift_variant	REV__PCDH20|p.I797Mfs*26|1|0.06|ENSG00000280165|chr13:61411708-61411708|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7876892089844	2	509.239135	1016.46372	0.31973	0.00016282	-0.07855	-4.0001E-05	0.24118	0.00012282	509.2390920228969	23.64	0.50841	23.602	23.339	23.848	-0.038927					34	17	2	0	0	0	0.34337	1	3492	3492		5.2307	0	1	128930	+		5671	19359	2855	2855	7906	7906					-0.04385567591180006
DLYHTKRSL	9	Unmodified	_DLYHTKRSL_					0	0	0		ENSG00000261739|ENST00000562295|GOLGA8S;nc|ENSG00000181984|A6NN73|GOLGA8CP;ENSG00000153684|ENST00000526619|GOLGA8F;ENSG00000183629|ENST00000525590|GOLGA8G	ENSG00000261739|ENST00000562295|GOLGA8S	ENSG00000261739|ENST00000562295|GOLGA8S	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.284912109375	2	566.809105	1131.60366	0.37148	0.00021056	-0.12673	-7.1831E-05	0.24476	0.00013873	566.809155694173	35.992	0.56359	35.992	35.719	36.282	0					57	20	4	0	0	0	0.1939	1	7208	7208		30.637	5.2372	1	689610			5672	8663	2856	2856	7907	7907					0.04311932737573443
DLYLKELLNLA	11	Unmodified	_DLYLKELLNLA_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2477111816406	3	435.586861	1303.73875	-1.0686	-0.00046545	-1.6708	-0.0007278	-2.7394	-0.0011932	435.5861891232784	34.51	0.49842	34.51	34.277	34.775	0					28	17	2	0	0	0	0.33146	1	6860	6860		6.6235	0.75532	1	145350			5673	4783	2857	2857	7908	7908					0.09903368088703246
DLYLVSHEE	9	Unmodified	_DLYLVSHEE_					0	0	0			REV__nc|ENSG00000108018|Q8WY21-4|SORCS1	REV__nc|ENSG00000108018|Q8WY21-4|SORCS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.753173828125	2	552.764029	1103.5135	0.50787	0.00028073	2.2443	0.0012406	2.7522	0.0015213	552.7656829077388	85.851	1.0343	85.936	85.542	86.576	0.084251					90	39	4	0	0	0	0.28674	1	22639	22639		10.824	0.64053	1	665730	+		5674	14579	2858	2858	7909	7909					-0.03411161381495731
DLYNKDYF	8	Unmodified	_DLYNKDYF_					0	0	0			REV__HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|124|2|anti-sense	REV__HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|124|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.804443359375	2	539.248015	1076.48148	0.61398	0.00033109	-0.36069	-0.0001945	0.2533	0.00013659	539.2476722382479	71.086	0.522	71.061	70.666	71.188	-0.024864					29	18	2	0	0	0	0.32099	1	18035	18035		19.257	4.0085	1	328600	+		5675	22737	2859	2859	7910	7910					-0.053705290646803405
DLYRLKRCYF	10	Unmodified	_DLYRLKRCYF_					0	0	0			REV__ENSG00000136802|ENST00000372600|LRRC8A	REV__ENSG00000136802|ENST00000372600|LRRC8A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7923583984375	3	459.576302	1375.70708	0.11836	5.4397E-05	-2.6513	-0.0012185	-2.533	-0.0011641	459.9093562216478	58.789	0.26292	58.789	58.654	58.917	0					12	8	2	0	0	0	0.32051	1	14235	14235		0.69767	0	1	133090	+		5676	15824	2860	2860	7911	7911					0.03425096853720788
DMCFTTGSIPQ	11	Unmodified	_DMCFTTGSIPQ_					0	0	0		nc|ENSG00000168126|Q8NHA6|OR2W6P	nc|ENSG00000168126|Q8NHA6|OR2W6P	nc|ENSG00000168126|Q8NHA6|OR2W6P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.2821044921875	2	600.257199	1198.49985	0.53103	0.00031875	-0.20893	-0.00012541	0.32209	0.00019334	600.257404959209	57.585	0.56028	57.671	57.465	58.025	0.085621					30	20	2	0	0	0	0.32736	1	13894	13894		12.241	1.4167	1	349470			5677	12828	2861	2861	7912	7912					-0.09146478476623088
DMILHGLSH	9	Unmodified	_DMILHGLSH_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.7579650878906	2	511.758027	1021.5015	-0.025029	-1.2809E-05	0.23737	0.00012147	0.21234	0.00010867	511.75809294261455	25.677	0.53879	25.655	25.328	25.867	-0.022238					30	18	2	0	0	0	0.25314	1	4116	4116		15.847	1.9411	1	269700	+		5678	14366	2862	2862	7913	7913					-0.008390566056846183
DMRDSRDPMY	10	Unmodified	_DMRDSRDPMY_					0	0	0		ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	643.2691040039062	2	643.268629	1284.52271	0.63232	0.00040675	-0.93944	-0.00060431	-0.30712	-0.00019756	643.2684752868618	64.373	0.99628	64.373	64.079	65.076	0					129	36	6	0	0	0	0.36786	1	16049	16049		9.3831	0.63772	1	3328100			5679	3134	2863	2863	7914	7914					-0.10817459359145687
DMRDSRDPMY	10	Unmodified	_DMRDSRDPMY_					0	0	0		ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	643.2694091796875	2	643.268629	1284.52271	0.60673	0.00039029	-0.68225	-0.00043887	-0.075528	-4.8585E-05	643.2684958780566	64.263	0.89635	64.356	64.066	64.962	0.09288					114	32	5	0	0	0	0.31691	1	15911	15911		9.3831	0.63772	1	3668700			5680	3134	2863	2863	7915	7915					-0.10817459359145687
DMRDSRDPMY	10	Unmodified	_DMRDSRDPMY_					0	0	0		ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	643.268798828125	2	643.268629	1284.52271	0.6321	0.00040661	-0.81482	-0.00052415	-0.18271	-0.00011753	643.2684432006839	64.432	0.87249	64.423	64.101	64.974	-0.0095291					114	31	5	0	0	0	0.34325	3	16042	15945;16042;16097		13.906	0.86358	1	3351300			5681	3134	2863	2863	7916;7917;7918	7917					-0.10817459359145687
DMSPMLLSCN	10	Unmodified	_DMSPMLLSCN_					0	0	0		ENSG00000142623|ENST00000375471|PADI1	ENSG00000142623|ENST00000375471|PADI1	ENSG00000142623|ENST00000375471|PADI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2531127929688	2	555.735045	1109.45554	0.25052	0.00013922	2.1883	0.0012161	2.4389	0.0013554	555.7362458049868	76.157	0.088295	76.126	76.049	76.137	-0.031487					4	2	2	0	0	0	0.31889	1	19583	19583		6.2058	0	1	56632			5682	4456	2864	2864	7919	7919					-0.09481205894462619
DMVLLPQI	8	Oxidation (M)	_DM(Oxidation (M))VLLPQI_		DM(1)VLLPQI		DM(52)VLLPQI	0	0	1		ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000599123.1_1_19:8619471-8620644:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000596645.1_1_19:8620500-8642307:-|nuORF	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7594909667969	2	472.759704	943.504854	-0.15038	-7.1092E-05	0.34637	0.00016375	0.196	9.2659E-05	472.75968340220703	75.681	0.6799	75.681	75.369	76.049	0					46	24	3	0	0	0	0.14707	1	19449	19449		52.268	16.224	1	525320			5683	4439	2865	2865	7920	7920		562			0.030841934483191835
DMVLLPQI	8	Oxidation (M)	_DM(Oxidation (M))VLLPQI_		DM(1)VLLPQI		DM(59)VLLPQI	0	0	1		ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000599123.1_1_19:8619471-8620644:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000596645.1_1_19:8620500-8642307:-|nuORF	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7596130371094	2	472.759704	943.504854	0.17258	8.1589E-05	-0.20038	-9.4729E-05	-0.027795	-1.314E-05	472.75950054255946	75.698	0.61964	75.751	75.427	76.047	0.052361					37	22	2	0	0	0	0.11046	2	19430	19430;19479		58.679	16.584	1	650430			5684	4439	2865	2865	7921;7922	7921		562			0.030841934483191835
DMVLLPQI	8	Oxidation (M)	_DM(Oxidation (M))VLLPQI_		DM(1)VLLPQI		DM(59)VLLPQI	0	0	1		ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000599123.1_1_19:8619471-8620644:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000596645.1_1_19:8620500-8642307:-|nuORF	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7596435546875	2	472.759704	943.504854	0.26203	0.00012388	-0.21352	-0.00010094	0.048503	2.293E-05	472.7594423469571	75.729	0.74612	75.698	75.391	76.137	-0.031487					51	26	3	0	0	0	0.11046	1	19475	19475		58.679	16.584	1	412970			5685	4439	2865	2865	7923	7923		562			0.030841934483191835
DMWQHNMLM	9	Unmodified	_DMWQHNMLM_					0	0	0		ENST00000341170.4_1_9:100388110-100389693:-|nuORF	ENST00000341170.4_1_9:100388110-100389693:-|nuORF	ENST00000341170.4_1_9:100388110-100389693:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.80615234375	2	603.248654	1204.48276	0.35531	0.00021434	2.3944	0.0014444	2.7497	0.0016588	603.250458128151	73.419	0.49666	73.419	73.081	73.578	0					25	17	3	0	0	0	0.25622	1	18811	18811		7.2892	2.5332	1	136120			5686	9520	2866	2866	7924	7924					-0.11130677563414793
DMYEQFQNI	9	Oxidation (M)	_DM(Oxidation (M))YEQFQNI_		DM(1)YEQFQNI		DM(190)YEQFQNI	0	0	1		ENST00000556445.1_1_14:35487839-35488318:+|nuORF;ENST00000553923.1_1_14:35483969-35488318:+|nuORF;nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	ENST00000556445.1_1_14:35487839-35488318:+|nuORF;nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.2529907226562	2	602.252971	1202.49139	0.47722	0.00028741	-0.082494	-4.9682E-05	0.39473	0.00023773	602.2529306526386	58.922	0.99441	58.922	58.595	59.59	0					112	34	5	0	0	0	3.0646E-11	1	14296	14296		193.29	145.55	1	4527100			5687	11858;1639	2867	2867	7925	7925		201			-0.10175709121585896
DMYEQFQNI	9	Oxidation (M)	_DM(Oxidation (M))YEQFQNI_		DM(1)YEQFQNI		DM(210)YEQFQNI	0	0	1		ENST00000556445.1_1_14:35487839-35488318:+|nuORF;ENST00000553923.1_1_14:35483969-35488318:+|nuORF;nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	ENST00000556445.1_1_14:35487839-35488318:+|nuORF;nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.2532348632812	2	602.252971	1202.49139	0.55802	0.00033607	-0.044203	-2.6621E-05	0.51381	0.00030945	602.2529642521563	58.785	0.90125	58.876	58.586	59.488	0.091305					108	31	5	0	0	0	1.6153E-16	2	14288	14240;14288		208.15	164.29	1	4303700			5688	11858;1639	2867	2867	7926;7927	7927		201			-0.10175709121585896
DMYEQFQNI	9	Oxidation (M)	_DM(Oxidation (M))YEQFQNI_		DM(1)YEQFQNI		DM(210)YEQFQNI	0	0	1		ENST00000556445.1_1_14:35487839-35488318:+|nuORF;ENST00000553923.1_1_14:35483969-35488318:+|nuORF;nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	ENST00000556445.1_1_14:35487839-35488318:+|nuORF;nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.2531127929688	2	602.252971	1202.49139	0.44007	0.00026504	-0.069267	-4.1716E-05	0.37081	0.00022332	602.2529494288348	58.947	0.88135	58.933	58.684	59.566	-0.014271					90	30	4	0	0	0	1.6153E-16	1	14301	14301		208.15	160.4	1	5568000			5689	11858;1639	2867	2867	7928	7928		201			-0.10175709121585896
DMYLAPHV	8	Oxidation (M)	_DM(Oxidation (M))YLAPHV_		DM(1)YLAPHV		DM(83)YLAPHV	0	0	1		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-6|GPS1;nc|ENSG00000169727|Q13098-7|GPS1	ENSG00000169727|ENST00000578552|GPS1	ENSG00000169727|ENST00000578552|GPS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2262878417969	2	481.226028	960.437503	0.17145	8.2508E-05	0.44276	0.00021307	0.61421	0.00029558	481.22614550110575	43.482	0.81558	43.482	43.116	43.932	0					53	29	3	0	0	0	0.040061	1	9567	9567		82.939	39.971	1	537200			5690	6379	2868	2868	7929	7929		748			-0.04429836762653849
DMYLAPHV	8	Oxidation (M)	_DM(Oxidation (M))YLAPHV_		DM(1)YLAPHV		DM(83)YLAPHV	0	0	1		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-6|GPS1;nc|ENSG00000169727|Q13098-7|GPS1	ENSG00000169727|ENST00000578552|GPS1	ENSG00000169727|ENST00000578552|GPS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.226318359375	2	481.226028	960.437503	0.26979	0.00012983	0.52203	0.00025122	0.79183	0.00038105	481.22616024941675	43.225	0.70037	43.309	43.035	43.736	0.083996					40	25	2	0	0	0	0.040061	1	9482	9482		82.939	39.971	1	628560			5691	6379	2868	2868	7930	7930		748			-0.04429836762653849
DMYLVPKL	8	Oxidation (M)	_DM(Oxidation (M))YLVPKL_		DM(1)YLVPKL		DM(92)YLVPKL	0	0	1		ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7677307128906	2	497.767529	993.520504	0.37444	0.00018639	0.31378	0.00015619	0.68822	0.00034257	497.7675053764389	57.947	0.77884	57.947	57.634	58.413	0					71	27	3	0	0	0	0.027083	3	14051	14000;14051;14101		92.491	32.93	1	1555400			5692	7594	2869	2869	7931;7932;7933	7932		838			0.023484799653488153
DMYLVPKL	8	Oxidation (M)	_DM(Oxidation (M))YLVPKL_		DM(1)YLVPKL		DM(72)YLVPKL	0	0	1		ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7677001953125	2	497.767529	993.520504	0.41329	0.00020572	0.10211	5.0826E-05	0.5154	0.00025655	497.76747539375106	57.835	0.92561	57.92	57.598	58.524	0.085621					78	33	3	0	0	0	0.063256	3	13988	13935;13988;14040		71.922	33.948	1	1673200			5693	7594	2869	2869	7934;7935;7936	7935		838			0.023484799653488153
DMYLVPKL	8	Oxidation (M)	_DM(Oxidation (M))YLVPKL_		DM(1)YLVPKL		DM(72)YLVPKL	0	0	1		ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.767822265625	2	497.767529	993.520504	0.45279	0.00022538	0.37101	0.00018467	0.82379	0.00041006	497.7676238972185	57.993	1.1723	57.976	57.631	58.803	-0.0172					86	42	3	0	0	0	0.063256	3	14026	13981;14026;14079		71.922	33.948	1	1462200			5694	7594	2869	2869	7937;7938;7939	7938		838			0.023484799653488153
DMYPRPLS	8	Unmodified	_DMYPRPLS_					0	0	0			REV__ENST00000463608.5_1_22:21828989-21829627:-|nuORF	REV__ENST00000463608.5_1_22:21828989-21829627:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.341796875	2	489.739302	977.464052	0.57869	0.00028341	0.88286	0.00043237	1.4615	0.00071578	489.739718399561	65.824	0.6068	65.824	65.518	66.124	0					35	21	3	0	0	0	0.33293	1	16386	16386		14.838	0.93222	1	276340	+		5695	21254	2870	2870	7940	7940					-0.02558147871309302
DNEFKEKGI	9	Unmodified	_DNEFKEKGI_					0	0	0		ENST00000469163.1_1_22:45574147-45579448:+|nuORF;nc|ENSG00000093000|Q9UKX7-2|NUP50;ENST00000405676.2_1_6:25140296-25141628:+|nuORF;ENSG00000093000|ENST00000347635|NUP50	ENST00000469163.1_1_22:45574147-45579448:+|nuORF	ENST00000469163.1_1_22:45574147-45579448:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2608642578125	2	540.272021	1078.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.183	1	21.183	20.683	21.683	0								0	0	0	0.18639	1	2764	2764		26.268	0	1				5696	1432	2871	2871	7941	7941					-0.0066345514460408594
DNEFLHTIH	9	Unmodified	_DNEFLHTIH_					0	0	0			REV__nc|ENSG00000173852|Q2PZI1|DPY19L1	REV__nc|ENSG00000173852|Q2PZI1|DPY19L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8019409179688	2	563.269813	1124.52507	0.26204	0.0001476	-0.96977	-0.00054624	-0.70773	-0.00039864	563.2691026506479	24.896	0.41319	24.84	24.661	25.074	-0.055931					18	14	2	0	0	0	0.25706	1	3872	3872		6.7232	0.99131	1	36409	+		5697	17809	2872	2872	7942	7942					-0.03220919567525016
DNEMEDMII	9	Unmodified	_DNEMEDMII_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2308959960938	2	555.228107	1108.44166	0.47947	0.00026622	3.4512	0.0019162	3.9307	0.0021824	555.2309796396609	87.644	0.55934	87.644	87.366	87.925	0					60	27	3	0	0	0	0.31417	1	23059	23059		6.7232	0	1	157680			5698	7759	2873	2873	7943	7943					-0.10822160121892921
DNEMEDMII	9	Unmodified	_DNEMEDMII_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2311401367188	2	555.228107	1108.44166	0.38049	0.00021126	3.6148	0.0020071	3.9953	0.0022183	555.2308781076342	87.385	0.55179	87.472	87.278	87.83	0.087097					48	27	3	0	0	0	0.31417	1	23071	23071		6.7232	0.36906	1	255720			5699	7759	2873	2873	7944	7944					-0.10822160121892921
DNFSTRSPLPF	11	Unmodified	_DNFSTRSPLPF_					0	0	0			REV__ENSG00000197993|ENST00000355265|KEL	REV__ENSG00000197993|ENST00000355265|KEL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.547119140625	3	427.547177	1279.6197	-0.28307	-0.00012103	0.052705	2.2534E-05	-0.23037	-9.8492E-05	427.5471552378601	28.311	0.60762	28.307	28.112	28.72	-0.0042572					61	21	4	0	0	0	0.42863	1	4964	4964		7.4771	1.2427	1	743840	+		5700	18787	2874	2874	7945	7945					-0.008924058161937864
DNLHRKFK	8	Unmodified	_DNLHRKFK_					0	0	0			REV__ENST00000482519.1_1_1:171675557-171707554:-|nuORF	REV__ENST00000482519.1_1_1:171675557-171707554:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.9297485351562	2	529.298707	1056.58286	0.73273	0.00038784	-0.2316	-0.00012259	0.50113	0.00026525	529.298558380839	20.76	0.36263	20.707	20.472	20.835	-0.05291					20	12	2	0	0	0	0.34294	1	2614	2614		7.2892	0	1	65725	+		5701	14977	2875	2875	7946	7946					0.05683387148565089
DNLHRKFK	8	Unmodified	_DNLHRKFK_					0	0	0			REV__ENST00000482519.1_1_1:171675557-171707554:-|nuORF	REV__ENST00000482519.1_1_1:171675557-171707554:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	529.298707	1056.58286	0.5831	0.00030864	-0.55733	-0.00029499	0.025775	1.3643E-05	529.2983968064555	20.61	0.45743	20.61	20.341	20.798	0	-0.04837	-0.00013965	NaN	7.2892	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64629	+		5702	14977	2875	2875							0.05683387148565089
DNLPVATRL	9	Unmodified	_DNLPVATRL_					0	0	0		ENSG00000101337|ENST00000398022|TM9SF4	ENSG00000101337|ENST00000398022|TM9SF4	ENSG00000101337|ENST00000398022|TM9SF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.26910400390625	2	499.785099	997.555644	0.10735	5.3654E-05	-0.41152	-0.00020567	-0.30417	-0.00015202	499.7847731093509	14.831	0.23091	14.721	14.587	14.818	-0.10981					12	7	2	0	0	0	0.25938	1	822	822		4.3292	0.73274	1	36335			5703	1684	2876	2876	7947	7947					0.056768588175032164
DNMNSDAETF	10	Unmodified	_DNMNSDAETF_					0	0	0			REV__ENST00000518096.1_1_8:30210219-30210855:+|nuORF	REV__ENST00000518096.1_1_8:30210219-30210855:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.770263671875	2	572.216585	1142.41862	0.12048	6.8941E-05	-2.9418	-0.0016833	-2.8213	-0.0016144	572.2150396419772	59.391	0.42748	59.391	59.133	59.56	0					27	14	3	0	0	0	0.3144	1	14485	14485		13.042	3.695	1	189790	+		5704	21862	2877	2877	7948	7948					-0.14689462915043805
DNMNSDAETF	10	Unmodified	_DNMNSDAETF_					0	0	0			REV__ENST00000518096.1_1_8:30210219-30210855:+|nuORF	REV__ENST00000518096.1_1_8:30210219-30210855:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7703247070312	2	572.216585	1142.41862	0.40391	0.00023112	-2.8429	-0.0016268	-2.439	-0.0013957	572.2149354703503	59.352	0.26562	59.338	59.222	59.488	-0.014271					15	8	2	0	0	0	0.3144	1	14468	14468		13.042	3.695	1	175240	+		5705	21862	2877	2877	7949	7949					-0.14689462915043805
DNNLICIH	8	Unmodified	_DNNLICIH_					0	0	0			REV__ENSG00000165186|ENST00000379361|PTCHD1	REV__ENSG00000165186|ENST00000379361|PTCHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2196960449219	2	471.229102	940.443651	0.12763	6.0142E-05	-0.088308	-4.1613E-05	0.03932	1.8529E-05	471.22897535181096	19.281	0.60334	19.225	19.048	19.652	-0.055693					35	20	2	0	0	0	0.46461	1	2306	2306		0.79363	0	1	118190	+		5706	17215	2878	2878	7950	7950					-0.028953185311365814
DNQIDQVF	8	Unmodified	_DNQIDQVF_					0	0	0			REV__ACBD5|p.N362Lfs*5|1|0.06|ENSG00000107897|chr10:27210961-27210962|-/AGAAGAGGAAGAG|frameshift_variant	REV__ACBD5|p.N362Lfs*5|1|0.06|ENSG00000107897|chr10:27210961-27210962|-/AGAAGAGGAAGAG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.73138427734375	2	489.729989	977.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.628	1	78.628	78.128	79.128	0								0	0	0	0.27792	1	20352	20352		32.305	3.8186	1		+		5707	13070	2879	2879	7951	7951					-0.04419986241521201
DNVRQQLSR	9	Unmodified	_DNVRQQLSR_					0	0	0		ENSG00000109606|ENST00000336812|DHX15;ENST00000512903.1_1_4:24529549-24534804:-|nuORF;ENST00000508032.5_1_4:24529549-24538851:-|nuORF	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7984008789062	2	558.299436	1114.58432	0.42081	0.00023494	0.1017	5.6778E-05	0.52251	0.00029172	558.2993204398455	32.739	0.85523	32.794	32.288	33.143	0.055309					48	30	3	0	0	0	0.25202	1	6292	6292		10.824	1.4408	1	659580			5708	2261	2880	2880	7952	7952					0.03160976446656605
DPADVFREF	9	Unmodified	_DPADVFREF_					0	0	0		nc|ENSG00000293135|Q8WWF6|DNAJB3	nc|ENSG00000293135|Q8WWF6|DNAJB3	nc|ENSG00000293135|Q8WWF6|DNAJB3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2483520507812	2	548.258914	1094.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.687	1	17.57	17.07	18.07	-0.11739								0	0	0	0.23852	1	1707	1707		10.074	2.1638	1				5709	13018	2881	2881	7953	7953					-0.04019724316094653
DPAKFKSI	8	Unmodified	_DPAKFKSI_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.2581787109375	2	453.258185	904.501818	0.056728	2.5712E-05	0.08336	3.7784E-05	0.14009	6.3496E-05	453.25811328601117	26.553	1.3696	26.553	25.925	27.294	0					74	47	2	0	0	0	0.039031	2	4389	4389;4444		83.429	23.355	1	416540			5710	6782	2882	2882	7954;7955	7954					0.045746863858198594
DPAKFKSI	8	Unmodified	_DPAKFKSI_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2581481933594	2	453.258185	904.501818	0.089847	4.0724E-05	0.14861	6.736E-05	0.23846	0.00010808	453.258158986831	26.553	1.2099	26.515	25.931	27.141	-0.038671					67	42	2	0	0	0	0.058462	2	4408	4357;4408		74.2	30.427	1	466490			5711	6782	2882	2882	7956;7957	7957					0.045746863858198594
DPAKFKSI	8	Unmodified	_DPAKFKSI_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.2580871582031	2	453.258185	904.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.598	1	26.576	26.076	27.076	-0.022238								0	0	0	0.042055	1	4400	4400		74.2	22.57	1				5712	6782	2882	2882	7958	7958					0.045746863858198594
DPAYSSKV	8	Unmodified	_DPAYSSKV_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.2536926269531	2	433.71635	865.418148	-0.10146	-4.4006E-05	0.35497	0.00015396	0.25351	0.00010995	433.71628265374807	24.206	0.5408	24.167	23.878	24.418	-0.038927					29	18	2	0	0	0	0.3415	1	3674	3674		13.042	2.9685	1	44813			5713	5381	2883	2883	7959	7959					-0.019944697818914392
DPAYSSKV	8	Unmodified	_DPAYSSKV_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	433.71635	865.418148	-0.036975	-1.6037E-05	0.026448	1.1471E-05	-0.010527	-4.5656E-06	433.7162599267641	24.221	0.47465	24.149	23.852	24.327	-0.072559	-0.0094967	-0.00017571	NaN	13.042	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66642			5714	5381	2883	2883							-0.019944697818914392
DPCQAHRTLD	10	Unmodified	_DPCQAHRTLD_					0	0	0		nc|ENSG00000169344|P07911-3|UMOD;nc|ENSG00000169344|P07911-4|UMOD;ENSG00000169344|ENST00000396138|UMOD;nc|ENSG00000169344|P07911-5|UMOD	nc|ENSG00000169344|P07911-3|UMOD	nc|ENSG00000169344|P07911-3|UMOD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.8323364257812	2	578.264204	1154.51386	0.80323	0.00046448	1.2036	0.00069602	2.0069	0.0011605	578.2650041360054	56.139	0.16774	56.12	55.965	56.133	-0.019081					9	5	2	0	0	0	0.31838	1	13437	13437		7.609	2.3783	1	287720			5715	6351	2884	2884	7960	7960					-0.057220649333203255
DPCQNDATC	9	Unmodified	_DPCQNDATC_					0	0	0		ENSG00000134250|ENST00000256646|NOTCH2;NOTCH2|p.T2295Yfs*19|1|0.25|ENSG00000134250|chr1:119915839-119915840|-/TATA|frameshift_variant;NOTCH2|p.N1131Tfs*76|1|0.2|ENSG00000134250|chr1:119937412-119937412|T/-|frameshift_variant	ENSG00000134250|ENST00000256646|NOTCH2	ENSG00000134250|ENST00000256646|NOTCH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.6686706542969	2	483.668217	965.321881	0.36122	0.00017471	0.7393	0.00035757	1.1005	0.00053228	483.6685523546966	32.871	1.775	32.871	31.953	33.728	0					96	63	2	0	0	0	0.30623	1	6191	6191		7.9102	2.6795	1	285270			5716	3766	2885	2885	7961	7961					-0.16216728675829017
DPCQNDATC	9	Unmodified	_DPCQNDATC_					0	0	0		ENSG00000134250|ENST00000256646|NOTCH2;NOTCH2|p.T2295Yfs*19|1|0.25|ENSG00000134250|chr1:119915839-119915840|-/TATA|frameshift_variant;NOTCH2|p.N1131Tfs*76|1|0.2|ENSG00000134250|chr1:119937412-119937412|T/-|frameshift_variant	ENSG00000134250|ENST00000256646|NOTCH2	ENSG00000134250|ENST00000256646|NOTCH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.6688232421875	2	483.668217	965.321881	0.36658	0.00017731	0.69368	0.00033551	1.0603	0.00051282	483.66851898669154	32.606	1.6975	32.661	31.75	33.447	0.055313					101	60	2	0	0	0	0.30623	1	6152	6152		7.9102	2.6795	1	320670			5717	3766	2885	2885	7962	7962					-0.16216728675829017
DPDLLWCAV	9	Unmodified	_DPDLLWCAV_					0	0	0			REV__ENSG00000051341|ENST00000264233|POLQ	REV__ENSG00000051341|ENST00000264233|POLQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.796142578125	2	516.24696	1030.47937	-0.015555	-8.03E-06	0.36488	0.00018837	0.34933	0.00018034	516.2470782228426	39.322	0.56532	39.322	39.104	39.669	0					26	20	2	0	0	0	0.25879	1	8335	8335		4.756	0.42677	1	165250	+		5718	13568	2886	2886	7963	7963					-0.03465281074136328
DPDLLWCAV	9	Unmodified	_DPDLLWCAV_					0	0	0			REV__ENSG00000051341|ENST00000264233|POLQ	REV__ENSG00000051341|ENST00000264233|POLQ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	516.24696	1030.47937	0.085654	4.4218E-05	-0.2553	-0.0001318	-0.16965	-8.7581E-05	516.7483355751058	39.117	0.55509	39.209	39.052	39.607	0.09267	-0.056358	-0.00027867	NaN	4.756	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162830	+		5719	13568	2886	2886							-0.03465281074136328
DPEEIHPEGP	10	Unmodified	_DPEEIHPEGP_					0	0	0		ENST00000248594.10_1_7:77166652-77166922:+|nuORF	ENST00000248594.10_1_7:77166652-77166922:+|nuORF	ENST00000248594.10_1_7:77166652-77166922:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7755737304688	2	560.251286	1118.48802	0.23669	0.00013261	2.0145	0.0011286	2.2512	0.0012613	560.2525903968962	75.411	0.43975	75.411	75.178	75.618	0					25	15	2	0	0	0	0.30586	1	19408	19408		19.257	4.6753	1	227390			5720	8906	2887	2887	7964	7964					-0.06648635903934519
DPEFEAILDTV	11	Unmodified	_DPEFEAILDTV_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.8040161132812	2	624.803351	1247.59215	0.16929	0.00010578	0.33242	0.00020769	0.50171	0.00031347	624.8036570239492	18.666	0.6432	18.666	18.391	19.034	0					56	22	3	0	0	0	0.44523	1	2047	2047		5.2969	0.39987	1	305340			5721	7989	2888	2888	7965	7965					-0.02174353867121681
DPFAEQQTT	9	Unmodified	_DPFAEQQTT_					0	0	0		nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1	nc|ENSG00000127527|Q9UBC2-3|EPS15L1	nc|ENSG00000127527|Q9UBC2-3|EPS15L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.31689453125	2	518.732729	1035.4509	0.35393	0.00018359	-2.051	-0.0010639	-1.697	-0.0008803	518.7315053376767	79.818	0.48647	79.789	79.598	80.084	-0.028931					23	17	2	0	0	0	0.24688	1	20732	20732		14.838	1.3304	1	137340			5722	3326	2889	2889	7966	7966					-0.06540307449722604
DPFAFIHKI	9	Unmodified	_DPFAFIHKI_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B;KDM5B|p.D895Vfs*26|1|0.35|ENSG00000117139|chr1:202741628-202741628|T/-|frameshift_variant	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.3007202148438	2	544.300384	1086.58622	0.60804	0.00033096	-0.036716	-1.9984E-05	0.57133	0.00031097	544.3009615455425	63.729	3.2275	63.729	62.984	66.211	0					339	117	5	0	0	0	5.0285E-07	5	15738	15688;15738;15786;15836;16108		160.52	95.281	1	42173000			5723	2777	2890	2890	7967;7968;7969;7970;7971	7968					0.04638637202560858
DPFAFIHKI	9	Unmodified	_DPFAFIHKI_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B;KDM5B|p.D895Vfs*26|1|0.35|ENSG00000117139|chr1:202741628-202741628|T/-|frameshift_variant	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.282470703125	2	544.300384	1086.58622	0.54374	0.00029596	0.46078	0.0002508	1.0045	0.00054676	544.3006335748819	66.463	0.92422	66.463	66.211	67.135	0					46	32	2	0	0	0	0.23767	1	16832	16832		18.146	2.2992	1	210770			5724	2777	2890	2890	7972	7972					0.04638637202560858
DPFAFIHKI	9	Unmodified	_DPFAFIHKI_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B;KDM5B|p.D895Vfs*26|1|0.35|ENSG00000117139|chr1:202741628-202741628|T/-|frameshift_variant	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3009643554688	2	544.300384	1086.58622	0.71496	0.00038915	-0.16624	-9.0487E-05	0.54872	0.00029867	544.3008312003249	63.531	2.8614	63.626	63.066	65.928	0.095722					299	104	5	0	0	0	0.00014042	5	15703	15643;15652;15703;15755;15799		134.3	86.547	1	39967000			5725	2777	2890	2890	7973;7974;7975;7976;7977	7975					0.04638637202560858
DPFAFIHKI	9	Unmodified	_DPFAFIHKI_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B;KDM5B|p.D895Vfs*26|1|0.35|ENSG00000117139|chr1:202741628-202741628|T/-|frameshift_variant	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3011474609375	2	544.300384	1086.58622	0.78031	0.00042472	-0.22878	-0.00012452	0.55153	0.0003002	544.3009268032648	63.748	4.0717	63.739	63.051	67.123	-0.0087547					356	148	4	0	0	0	5.0285E-07	6	15777	15683;15730;15777;15827;16417;16818		160.52	85.587	1	49585000			5726	2777	2890	2890	7978;7979;7980;7981;7982;7983	7980					0.04638637202560858
DPFAGRNVI	9	Unmodified	_DPFAGRNVI_					0	0	0		ENST00000436788.2_1_6:119234457-119238897:-|nuORF;nc|ENSG00000111877|Q9NXL9-3|MCM9;nc|ENSG00000111877|Q9NXL9-2|MCM9;ENSG00000111877|ENST00000619706|MCM9	ENST00000436788.2_1_6:119234457-119238897:-|nuORF	ENST00000436788.2_1_6:119234457-119238897:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7642517089844	2	494.764166	987.513779	0.5829	0.0002884	0.15478	7.658E-05	0.73768	0.00036498	494.7641791227628	48.467	0.48872	48.467	48.205	48.694	0					40	16	3	0	0	0	0.0046246	2	11076	11069;11076		89.401	51.427	1	878270			5727	2398	2891	2891	7984;7985	7985					0.019523031289850223
DPFAGRNVI	9	Unmodified	_DPFAGRNVI_					0	0	0		ENST00000436788.2_1_6:119234457-119238897:-|nuORF;nc|ENSG00000111877|Q9NXL9-3|MCM9;nc|ENSG00000111877|Q9NXL9-2|MCM9;ENSG00000111877|ENST00000619706|MCM9	ENST00000436788.2_1_6:119234457-119238897:-|nuORF	ENST00000436788.2_1_6:119234457-119238897:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.76446533203125	2	494.764166	987.513779	0.53126	0.00026285	2.0489	0.0010137	2.5802	0.0012766	494.7655314725273	48.397	1.222	48.441	48.145	49.367	0.04332					82	44	4	0	0	0	0.048637	1	11042	11042		53.404	29.383	1	1090800			5728	2398	2891	2891	7986	7986					0.019523031289850223
DPFAPSRV	8	Unmodified	_DPFAPSRV_					0	0	0		nc|ENSG00000142186|Q96KG9-5|SCYL1;nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.2171630859375	2	444.732335	887.450116	0.16265	7.2335E-05	-0.10829	-4.8159E-05	0.054361	2.4176E-05	444.73226031042185	38.257	0.83896	38.257	38.034	38.873	0					57	29	3	0	0	0	0.27047	1	7970	7970		31.268	7.2478	1	790710			5729	4428	2892	2892	7987	7987					0.0018894269189786428
DPFAPSRV	8	Unmodified	_DPFAPSRV_					0	0	0		nc|ENSG00000142186|Q96KG9-5|SCYL1;nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.2171325683594	2	444.732335	887.450116	0.23143	0.00010293	-0.22657	-0.00010076	0.0048607	2.1617E-06	444.73221669037497	38.229	0.74185	38.32	38.042	38.784	0.090881					53	26	3	0	0	0	0.2914	1	7955	7955		31.268	7.2478	1	766600			5730	4428	2892	2892	7988	7988					0.0018894269189786428
DPFAPSRV	8	Unmodified	_DPFAPSRV_					0	0	0		nc|ENSG00000142186|Q96KG9-5|SCYL1;nc|ENSG00000142186|Q96KG9-3|SCYL1;nc|ENSG00000142186|Q96KG9-4|SCYL1;nc|ENSG00000142186|Q96KG9-6|SCYL1;nc|ENSG00000142186|Q96KG9-2|SCYL1;ENSG00000142186|ENST00000270176|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	nc|ENSG00000142186|Q96KG9-5|SCYL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.2171325683594	2	444.732335	887.450116	0.26721	0.00011884	-0.161	-7.1601E-05	0.10622	4.7238E-05	444.73220368938604	38.216	0.72639	38.314	38.007	38.733	0.097527					61	25	3	0	0	0	0.2914	1	7933	7933		31.268	7.2478	1	732490			5731	4428	2892	2892	7989	7989					0.0018894269189786428
DPFEVSYQI	9	Unmodified	_DPFEVSYQI_					0	0	0		ENSG00000141232|ENST00000499247|TOB1;TOB1|p.N194Kfs*4|1|0.19|ENSG00000141232|chr17:50863435-50863436|TA/-|frameshift_variant;TOB2|p.G195Afs*9|1|0.26|ENSG00000183864|chr22:41436762-41436762|C/-|frameshift_variant;nc|ENSG00000183864|Q14106-2|TOB2;ENSG00000183864|ENST00000327492|TOB2	ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2613525390625	2	549.261122	1096.50769	0.33051	0.00018153	0.28129	0.0001545	0.6118	0.00033604	549.2612666120118	75.407	1.1252	75.407	75.043	76.168	0					114	40	4	0	0	0	0.0024096	2	19383	19338;19383		106.94	58.594	1	4205600			5732	4360	2893	2893	7990;7991	7991					-0.03670259893192451
DPFEVSYQI	9	Unmodified	_DPFEVSYQI_					0	0	0		ENSG00000141232|ENST00000499247|TOB1;TOB1|p.N194Kfs*4|1|0.19|ENSG00000141232|chr17:50863435-50863436|TA/-|frameshift_variant;TOB2|p.G195Afs*9|1|0.26|ENSG00000183864|chr22:41436762-41436762|C/-|frameshift_variant;nc|ENSG00000183864|Q14106-2|TOB2;ENSG00000183864|ENST00000327492|TOB2	ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2614135742188	2	549.261122	1096.50769	0.52057	0.00028593	0.10167	5.5843E-05	0.62224	0.00034177	549.2611443556442	75.309	1.1371	75.361	75.051	76.188	0.052361					119	41	4	0	0	0	0.0024096	4	19312	19312;19360;19448;19454		106.94	58.594	1	4559400			5733	4360	2893	2893	7992;7993;7994;7995	7992					-0.03670259893192451
DPFEVSYQI	9	Unmodified	_DPFEVSYQI_					0	0	0		ENSG00000141232|ENST00000499247|TOB1;TOB1|p.N194Kfs*4|1|0.19|ENSG00000141232|chr17:50863435-50863436|TA/-|frameshift_variant;TOB2|p.G195Afs*9|1|0.26|ENSG00000183864|chr22:41436762-41436762|C/-|frameshift_variant;nc|ENSG00000183864|Q14106-2|TOB2;ENSG00000183864|ENST00000327492|TOB2	ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2613525390625	2	549.261122	1096.50769	0.60745	0.00033365	0.065206	3.5815E-05	0.67265	0.00036946	549.2611193840817	75.425	1.1319	75.393	75.084	76.216	-0.031487					119	41	4	0	0	0	0.0010968	2	19383	19338;19383		121.53	73.188	1	4927800			5734	4360	2893	2893	7996;7997	7997					-0.03670259893192451
DPFFMPEI	8	Oxidation (M)	_DPFFM(Oxidation (M))PEI_		DPFFM(1)PEI		DPFFM(130)PEI	0	0	1		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2284851074219	2	506.228236	1010.44192	0.61854	0.00031312	-0.11245	-5.6926E-05	0.50609	0.0002562	506.2281676890008	78.725	1.7841	78.725	78.169	79.953	0					218	70	5	0	0	0	0.0030373	4	20401	20306;20354;20401;20448		131.3	131.3	1	5739100			5735	2038	2894	2894	7998;7999;8000;8001	8000		251			-0.0628837233973627
DPFFMPEI	8	Oxidation (M)	_DPFFM(Oxidation (M))PEI_		DPFFM(1)PEI		DPFFM(120)PEI	0	0	1		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2286071777344	2	506.228236	1010.44192	0.52067	0.00026358	0.0078724	3.9852E-06	0.52854	0.00026756	506.22821540315533	78.656	1.9386	78.714	78.164	80.102	0.058151					212	77	5	0	0	0	0.010069	3	20377	20281;20329;20377		117.6	117.6	1	5312700			5736	2038	2894	2894	8002;8003;8004	8004		251			-0.0628837233973627
DPFFMPEI	8	Oxidation (M)	_DPFFM(Oxidation (M))PEI_		DPFFM(1)PEI		DPFFM(100)PEI	0	0	1		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2283020019531	2	506.228236	1010.44192	0.67412	0.00034126	-0.19733	-9.9895E-05	0.47679	0.00024137	506.22812259642217	78.741	1.526	78.711	78.2	79.726	-0.030426					198	61	5	0	0	0	0.017942	5	20342	20298;20342;20386;20430;20471		104.8	85.36	1	5569900			5737	2038	2894	2894	8005;8006;8007;8008;8009	8006		251			-0.0628837233973627
DPFGATPFI	9	Unmodified	_DPFGATPFI_					0	0	0		nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH;ENST00000498255.6_1_13:42772627-42773776:+|nuORF	nc|ENSG00000102780|Q86XP1-5|DGKH	nc|ENSG00000102780|Q86XP1-5|DGKH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.74237060546875	2	482.742368	963.470183	0.47004	0.00022691	-0.18581	-8.9698E-05	0.28423	0.00013721	482.7422204463029	83.22	0.8157	83.22	83.001	83.817	0					52	30	3	0	0	0	0.21303	2	21760	21760;21810		21.747	3.6117	1	327390			5738	1780	2895	2895	8010;8011	8010					-0.013013063681569292
DPFGATPFI	9	Unmodified	_DPFGATPFI_					0	0	0		nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH;ENST00000498255.6_1_13:42772627-42773776:+|nuORF	nc|ENSG00000102780|Q86XP1-5|DGKH	nc|ENSG00000102780|Q86XP1-5|DGKH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.74249267578125	2	482.742368	963.470183	0.38729	0.00018696	-0.009068	-4.3775E-06	0.37822	0.00018258	482.74230426228144	83.133	0.61151	83.206	82.979	83.59	0.073097					40	22	2	0	0	0	0.14076	2	21721	21721;21773		32.305	10.559	1	274900			5739	1780	2895	2895	8012;8013	8012					-0.013013063681569292
DPFGATPFI	9	Unmodified	_DPFGATPFI_					0	0	0		nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH;ENST00000498255.6_1_13:42772627-42773776:+|nuORF	nc|ENSG00000102780|Q86XP1-5|DGKH	nc|ENSG00000102780|Q86XP1-5|DGKH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7425537109375	2	482.742368	963.470183	0.47073	0.00022724	-0.23855	-0.00011516	0.23218	0.00011208	482.7421741464012	83.257	0.57571	83.237	83.027	83.603	-0.020584					52	22	3	0	0	0	0.12846	2	21761	21761;21810		34.102	4.8044	1	330620			5740	1780	2895	2895	8014;8015	8014					-0.013013063681569292
DPFIIIHSI	9	Unmodified	_DPFIIIHSI_					0	0	0		nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF;nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.80029296875	2	527.800217	1053.58588	0.70812	0.00037374	-0.14345	-7.5714E-05	0.56467	0.00029803	527.8000803598255	74.414	1.3102	74.414	74.029	75.339	0					99	45	4	0	0	0	3.5085E-07	5	19021	19009;19021;19072;19124;19155		166.45	84.835	1	3640600			5741	2949	2896	2896	8016;8017;8018;8019;8020	8017					0.06123217482695509
DPFIIIHSI	9	Unmodified	_DPFIIIHSI_					0	0	0		nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF;nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.8004760742188	2	527.800217	1053.58588	0.39191	0.00020685	0.1084	5.7215E-05	0.50032	0.00026407	527.800239469294	74.317	1.344	74.37	74.031	75.375	0.052361					113	47	4	0	0	0	6.7091E-11	3	19033	18988;19033;19084		181.33	99.714	1	3414100			5742	2949	2896	2896	8021;8022;8023	8022					0.06123217482695509
DPFIIIHSI	9	Unmodified	_DPFIIIHSI_					0	0	0		nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF;nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	nc|ENSG00000120526|Q96RS6-3|NUDCD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.8005981445312	2	527.800217	1053.58588	0.62304	0.00032884	-0.061601	-3.2513E-05	0.56144	0.00029633	527.8001654375978	74.436	1.3857	74.405	74.085	75.47	-0.030663					122	50	4	0	0	0	6.7091E-11	4	19020	19020;19070;19124;19180		181.33	88.505	1	3408000			5743	2949	2896	2896	8024;8025;8026;8027	8024					0.06123217482695509
DPFKRRGYWYF	11	Unmodified	_DPFKRRGYWYF_					0	0	0		CNTRL|p.S1224Rfs*3|1|0.15|ENSG00000119397|chr9:121150190-121150197|AGTCAGGA/-|frameshift_variant;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;ENST00000431571.5_1_9:123906333-123914781:+|nuORF;ENST00000373851.6_1_9:123874787-123912836:+|nuORF;nc|ENSG00000119397|Q7Z7A1-2|CNTRL	CNTRL|p.S1224Rfs*3|1|0.15|ENSG00000119397|chr9:121150190-121150197|AGTCAGGA/-|frameshift_variant	CNTRL|p.S1224Rfs*3|1|0.15|ENSG00000119397|chr9:121150190-121150197|AGTCAGGA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.78533935546875	3	512.257849	1533.75172	0.62204	0.00031864	3.1807	0.0016294	3.8028	0.001948	512.5940403183824	45.585	0.54643	45.585	45.341	45.888	0					28	19	2	0	0	0	0.3322	1	10261	10261		2.6312	0	1	158690			5744	192	2897	2897	8028	8028					0.006192439914229908
DPFKRRGYWYF	11	Unmodified	_DPFKRRGYWYF_					0	0	0		CNTRL|p.S1224Rfs*3|1|0.15|ENSG00000119397|chr9:121150190-121150197|AGTCAGGA/-|frameshift_variant;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;ENST00000431571.5_1_9:123906333-123914781:+|nuORF;ENST00000373851.6_1_9:123874787-123912836:+|nuORF;nc|ENSG00000119397|Q7Z7A1-2|CNTRL	CNTRL|p.S1224Rfs*3|1|0.15|ENSG00000119397|chr9:121150190-121150197|AGTCAGGA/-|frameshift_variant	CNTRL|p.S1224Rfs*3|1|0.15|ENSG00000119397|chr9:121150190-121150197|AGTCAGGA/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	512.257849	1533.75172	0.33327	0.00017072	3.6597	0.0018747	3.993	0.0020454	512.2594639639641	45.399	0.44788	45.464	45.147	45.595	0.065048	-0.0602	0.00041447	NaN	4.4062	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246150			5745	192	2897	2897							0.006192439914229908
DPFLSEKSV	9	Unmodified	_DPFLSEKSV_					0	0	0		ENSG00000182158|ENST00000330387|CREB3L2;CREB3L2|p.Y401Lfs*22|1|0.16|ENSG00000182158|chr7:137885057-137885063|GAAGGAT/-|frameshift_variant;nc|ENSG00000182158|Q70SY1-2|CREB3L2;nc|ENSG00000182158|Q70SY1-3|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2635192871094	2	511.263665	1020.51278	0.56907	0.00029094	-0.32386	-0.00016558	0.24521	0.00012537	511.26327887609597	45.899	0.63047	45.899	45.694	46.324	0					49	22	3	0	0	0	0.0013864	1	10279	10279		117.84	66.422	1	1714700			5746	7273	2898	2898	8029	8029					0.003340439694284214
DPFLSEKSV	9	Unmodified	_DPFLSEKSV_					0	0	0		ENSG00000182158|ENST00000330387|CREB3L2;CREB3L2|p.Y401Lfs*22|1|0.16|ENSG00000182158|chr7:137885057-137885063|GAAGGAT/-|frameshift_variant;nc|ENSG00000182158|Q70SY1-2|CREB3L2;nc|ENSG00000182158|Q70SY1-3|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	511.263665	1020.51278	0.1932	9.8775E-05	0.26223	0.00013407	0.45543	0.00023284	511.2636160854598	45.719	0.64371	45.779	45.536	46.18	0.059837	-0.037652	0.00030994	NaN	117.84	57	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1693100			5747	7273	2898	2898							0.003340439694284214
DPFLSEKSV	9	Unmodified	_DPFLSEKSV_					0	0	0		ENSG00000182158|ENST00000330387|CREB3L2;CREB3L2|p.Y401Lfs*22|1|0.16|ENSG00000182158|chr7:137885057-137885063|GAAGGAT/-|frameshift_variant;nc|ENSG00000182158|Q70SY1-2|CREB3L2;nc|ENSG00000182158|Q70SY1-3|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	511.263665	1020.51278	0.42927	0.00021947	-0.16684	-8.53E-05	0.26243	0.00013417	511.2633852993297	45.708	0.68314	45.773	45.544	46.227	0.065048	-0.044171	-0.0001288	NaN	117.84	67	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1400900			5748	7273	2898	2898							0.003340439694284214
DPFPGSPAI	9	Unmodified	_DPFPGSPAI_					0	0	0		ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7790832519531	2	450.726718	899.438883	0.32205	0.00014516	0.18807	8.4769E-05	0.51013	0.00022993	450.72652679361863	64.096	0.81704	64.189	63.737	64.554	0.09288					49	29	3	0	0	0	0.17611	1	15878	15878		34.102	7.7612	1	208400			5749	7506	2899	2899	8030	8030					-0.01485879402230239
DPFPVPLVI	9	Unmodified	_DPFPVPLVI_					0	0	0		nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-2|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7919921875	2	498.791861	995.569169	0.0050773	2.5325E-06	-0.70632	-0.00035231	-0.70125	-0.00034978	498.7919901823888	98.551	1.4055	98.551	98.013	99.419	0					334	166	4	0	0	0	0.21303	4	26334	26298;26334;26369;26405		21.747	7.165	1	583830			5750	4108	2900	2900	8031;8032;8033;8034	8032					0.07120716596739385
DPFPVPLVI	9	Unmodified	_DPFPVPLVI_					0	0	0		nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-2|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7919921875	2	498.791861	995.569169	0.17542	8.75E-05	-0.39528	-0.00019716	-0.21986	-0.00010966	498.7919138467489	98.39	0.85614	98.452	98.159	99.015	0.061523					233	103	3	0	0	0	0.24581	3	26296	26296;26331;26362		16.942	2.3606	1	766630			5751	4108	2900	2900	8035;8036;8037	8035					0.07120716596739385
DPFPVPLVI	9	Unmodified	_DPFPVPLVI_					0	0	0		nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-2|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7923278808594	2	498.791861	995.569169	0.31502	0.00015713	-0.69362	-0.00034597	-0.37859	-0.00018884	498.7918586234947	98.523	0.98569	98.516	98.253	99.239	-0.0068283					199	117	2	0	0	0	0.24581	4	26338	26338;26375;26410;26448		16.942	7.5949	1	730120			5752	4108	2900	2900	8038;8039;8040;8041	8038					0.07120716596739385
DPFQQTFIV	9	Unmodified	_DPFQQTFIV_					0	0	0		nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1	nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-4|HIPK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.779541015625	2	547.779482	1093.54441	0.4051	0.00022191	-0.51718	-0.0002833	-0.11207	-6.1392E-05	547.7792508241293	80.388	0.71564	80.388	80.035	80.751	0					69	26	4	0	0	0	0.20167	1	20915	20915		29.082	5.061	1	583210			5753	5667	2901	2901	8042	8042					0.0013803672336507589
DPFQQTFIV	9	Unmodified	_DPFQQTFIV_					0	0	0		nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1	nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-4|HIPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7796630859375	2	547.779482	1093.54441	0.43183	0.00023655	-0.49157	-0.00026927	-0.059741	-3.2725E-05	547.7792789507837	80.309	0.56894	80.374	80.109	80.678	0.065102					61	21	4	0	0	0	0.14786	1	20827	20827		31.268	10.815	1	573840			5754	5667	2901	2901	8043	8043					0.0013803672336507589
DPFQQTFIV	9	Unmodified	_DPFQQTFIV_					0	0	0		nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1	nc|ENSG00000163349|Q86Z02-4|HIPK1	nc|ENSG00000163349|Q86Z02-4|HIPK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.779541015625	2	547.779482	1093.54441	0.51076	0.00027978	-0.84358	-0.0004621	-0.33282	-0.00018231	547.7791133992953	80.435	0.64513	80.408	80.086	80.731	-0.026825					60	22	4	0	0	0	0.16853	1	20895	20895		38.176	38.176	1	676460			5755	5667	2901	2901	8044	8044					0.0013803672336507589
DPFQTARST	9	Unmodified	_DPFQTARST_					0	0	0			REV__ENSG00000103066|ENST00000219345|PLA2G15	REV__ENSG00000103066|ENST00000219345|PLA2G15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.7581787109375	2	511.748713	1021.48287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.646	1	25.59	25.09	26.09	-0.055931								0	0	0	0.22377	1	4118	4118		14.838	0	1		+		5756	14353	2902	2902	8045	8045					-0.027008949759192546
DPFQYQLVI	9	Unmodified	_DPFQYQLVI_					0	0	0		ENSG00000172817|ENST00000310193|CYP7B1	ENSG00000172817|ENST00000310193|CYP7B1	ENSG00000172817|ENST00000310193|CYP7B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.79541015625	2	561.795132	1121.57571	0.46061	0.00025877	0.0069979	3.9314E-06	0.46761	0.0002627	561.7951167564293	86.762	1.4562	86.762	86.354	87.81	0					173	63	5	0	0	0	0.058995	4	22876	22783;22829;22876;22929		49.554	27.18	1	4967300			5757	6663	2903	2903	8046;8047;8048;8049	8048					0.01978609757452432
DPFQYQLVI	9	Unmodified	_DPFQYQLVI_					0	0	0		ENSG00000172817|ENST00000310193|CYP7B1	ENSG00000172817|ENST00000310193|CYP7B1	ENSG00000172817|ENST00000310193|CYP7B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7954711914062	2	561.795132	1121.57571	0.41783	0.00023473	0.0065877	3.7009E-06	0.42441	0.00023843	561.7951157610962	86.611	2.1193	86.695	86.369	88.489	0.084251					204	100	5	0	0	0	0.058995	3	22780	22780;22827;22875		49.554	23.286	1	5439400			5758	6663	2903	2903	8050;8051;8052	8050					0.01978609757452432
DPFQYQLVI	9	Unmodified	_DPFQYQLVI_					0	0	0		ENSG00000172817|ENST00000310193|CYP7B1	ENSG00000172817|ENST00000310193|CYP7B1	ENSG00000172817|ENST00000310193|CYP7B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7953491210938	2	561.795132	1121.57571	0.40347	0.00022667	0.034073	1.9142E-05	0.43754	0.00024581	561.7951199755516	86.731	1.8309	86.725	86.342	88.173	-0.0056229					207	85	6	0	0	0	0.037019	3	22812	22812;22858;22904		57.722	27.18	1	4990200			5759	6663	2903	2903	8053;8054;8055	8053					0.01978609757452432
DPFSQFTI	8	Unmodified	_DPFSQFTI_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7319030761719	2	477.732	953.449448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.292	1	81.268	80.768	81.768	-0.02404								0	0	0	0.29891	1	21152	21152		29.082	3.6823	1				5760	1234	2904	2904	8056	8056					-0.029138967477933875
DPFTGGGR	8	Unmodified	_DPFTGGGR_					0	0	0		ENSG00000137055|ENST00000397292|PLAA;ENST00000520641.1_1_9:26916617-26919410:-|nuORF	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.24237060546875	2	403.69321	805.371866	-0.35669	-0.000144	1.1207	0.00045241	0.76398	0.00030842	403.6933465103952	18.684	0.5021	18.566	18.387	18.89	-0.11739					28	17	2	0	0	0	0.34337	1	2099	2099		5.2307	2.6532	1	39679			5761	4023	2905	2905	8057	8057					-0.038604898933272125
DPFVGQPLL	9	Unmodified	_DPFVGQPLL_					0	0	0			REV__ENST00000460243.1_1_3:53262881-53263452:-|nuORF	REV__ENST00000460243.1_1_3:53262881-53263452:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.32421875	2	493.271293	984.528032	0.30823	0.00015204	-0.24556	-0.00012113	0.062671	3.0914E-05	493.27125761954204	61.993	0.27924	61.993	61.836	62.115	0					14	9	2	0	0	0	0.24311	1	15260	15260		16.942	16.942	1	111200	+		5762	21200	2906	2906	8058	8058					0.03514955557295707
DPFVNELYWK	10	Unmodified	_DPFVNELYWK_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2104187011719	3	437.552039	1309.63429	-0.11404	-4.9899E-05	-3.2779	-0.0014343	-3.392	-0.0014842	437.5513275237877	25.075	0.12835	25.019	24.946	25.074	-0.055931					6	4	2	0	0	0	0.3213	1	3931	3931		1.9064	0.1641	1	22039	+		5763	15815	2907	2907	8059	8059					-0.008143336680632274
DPGDRPDLESI	11	Unmodified	_DPGDRPDLESI_					0	0	0		nc|ENSG00000171798|Q76NI1-4|KNDC1;ENSG00000171798|ENST00000304613|KNDC1	nc|ENSG00000171798|Q76NI1-4|KNDC1	nc|ENSG00000171798|Q76NI1-4|KNDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.5697937011719	3	405.194692	1212.56225	-0.28474	-0.00011537	-1.9713	-0.00079877	-2.2561	-0.00091415	405.52767158182235	23.404	0.36803	23.404	23.145	23.513	0					16	12	2	0	0	0	0.33238	1	3392	3392		1.3296	0	1	31728			5764	6575	2908	2908	8060	8060					-0.03553292812443942
DPGEAPKLCKL	11	Unmodified	_DPGEAPKLCKL_					0	0	0		ENSG00000184545|ENST00000397374|DUSP8	ENSG00000184545|ENST00000397374|DUSP8	ENSG00000184545|ENST00000397374|DUSP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8134765625	2	585.812999	1169.61144	0.45437	0.00026618	0.011136	6.5236E-06	0.46551	0.0002727	585.8131977846097	93.021	3.5283	93.022	92.072	95.601	0.00046539					450	297	2	0	0	0	0.38187	1	24509	24509		13.615	13.615	1	364080			5765	7460	2909	2909	8061	8061					0.03342323942820258
DPGPILRI	8	Unmodified	_DPGPILRI_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.76605224609375	2	440.766178	879.517802	0.72434	0.00031927	-0.54642	-0.00024085	0.17792	7.8421E-05	440.7658224045083	55.934	0.72216	55.934	55.594	56.316	0					50	25	3	0	0	0	0.015567	2	13391	13347;13391		108	33.574	1	1332300			5766	6236	2910	2910	8062;8063	8063					0.07322392622711504
DPGPILRI	8	Unmodified	_DPGPILRI_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.766357421875	2	440.766178	879.517802	0.50384	0.00022207	-0.27978	-0.00012332	0.22406	9.8758E-05	440.765926507528	55.875	0.59495	55.946	55.618	56.213	0.070885					48	21	3	0	0	0	0.024266	2	13383	13331;13383		96.285	41.511	1	1383900			5767	6236	2910	2910	8064;8065	8065					0.07322392622711504
DPGPILRI	8	Unmodified	_DPGPILRI_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.7661437988281	2	440.766178	879.517802	0.57381	0.00025292	-0.30406	-0.00013402	0.26975	0.0001189	440.7659317176921	55.958	0.59861	55.939	55.588	56.187	-0.019081					54	21	3	0	0	0	0.024266	2	13378	13378;13427		96.285	32.048	1	1521700			5768	6236	2910	2910	8066;8067	8066					0.07322392622711504
DPHLTLSL	8	Unmodified	_DPHLTLSL_					0	0	0			REV__ENST00000447548.5_3_10:22208848-22292309:-|nuORF	REV__ENST00000447548.5_3_10:22208848-22292309:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.8699951171875	2	448.247818	894.481082	-0.11546	-5.1755E-05	-0.42792	-0.00019182	-0.54338	-0.00024357	448.2475397962168	28.306	0.38094	28.306	28.065	28.446	0					19	12	2	0	0	0	0.31375	1	4869	4869		19.439	7.7987	1	117920	+		5769	13301	2911	2911	8068	8068					0.029620960061606638
DPIHPQLML	9	Unmodified	_DPIHPQLML_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2930908203125	2	532.283877	1062.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.718	1	61.71	61.21	62.21	-0.0085526								0	0	0	0.16757	1	15173	15173		30.637	3.0077	1				5770	5594	2912	2912	8069	8069					0.024426870882052754
DPIVMGVTV	9	Oxidation (M)	_DPIVM(Oxidation (M))GVTV_		DPIVM(1)GVTV		DPIVM(72)GVTV	0	0	1		ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7491760253906	2	473.749336	945.484119	-0.14969	-7.0917E-05	0.56369	0.00026705	0.414	0.00019613	473.7496275409996	59.732	0.49781	59.732	59.508	60.006	0					27	17	2	0	0	0	0.014888	1	14562	14562		71.922	25.901	1	429480			5771	5355	2913	2913	8070	8070		647			0.009196030686666745
DPIVMGVTV	9	Oxidation (M)	_DPIVM(Oxidation (M))GVTV_		DPIVM(1)GVTV		DPIVM(75)GVTV	0	0	1		ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.74932861328125	2	473.749336	945.484119	-0.081492	-3.8607E-05	-0.0037182	-1.7615E-06	-0.08521	-4.0368E-05	473.749420121355	59.642	0.49716	59.737	59.464	59.961	0.095093					29	17	2	0	0	0	0.012929	1	14543	14543		74.929	28.908	1	316100			5772	5355	2913	2913	8071	8071		647			0.009196030686666745
DPIYPVCIC	9	Unmodified	_DPIYPVCIC_					0	0	0		ENST00000475659.1_1_1:197237491-197326220:+|nuORF;nc|ENSG00000134376|P82279-5|CRB1;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;ENSG00000134376|ENST00000367400|CRB1	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.73876953125	2	511.737914	1021.46127	0.021369	1.0935E-05	1.7803	0.00091102	1.8016	0.00092196	511.7388892868903	14.801	0.38926	14.801	14.591	14.981	0					36	13	4	0	0	0	0.34536	1	835	835		2.0598	1.2661	1	146560			5773	3781	2914	2914	8072	8072					-0.04859739320488643
DPIYPVCIC	9	Unmodified	_DPIYPVCIC_					0	0	0		ENST00000475659.1_1_1:197237491-197326220:+|nuORF;nc|ENSG00000134376|P82279-5|CRB1;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;ENSG00000134376|ENST00000367400|CRB1	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	511.737914	1021.46127	0.021369	1.0935E-05	1.7803	0.00091102	1.8016	0.00092196	511.7388892868903	14.801	0.38926	14.801	14.591	14.981	0	-0.016301	-0.00010389	NaN	2.0598	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146560			5774	3781	2914	2914							-0.04859739320488643
DPIYVEVSILH	11	Unmodified	_DPIYVEVSILH_					0	0	0		ENSG00000116996|ENST00000366570|ZP4	ENSG00000116996|ENST00000366570|ZP4	ENSG00000116996|ENST00000366570|ZP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.89935302734375	3	428.899328	1283.67615	-0.02204	-9.4531E-06	0.91537	0.0003926	0.89333	0.00038315	428.89953718680897	63.295	1.0972	63.295	62.956	64.053	0					93	39	4	0	0	0	0.44713	1	15646	15646		5.0475	0.85802	1	743190			5775	2768	2915	2915	8073	8073					0.045662220204803816
DPKAFLIEI	9	Unmodified	_DPKAFLIEI_					0	0	0		ENSG00000182552|ENST00000326397|RWDD4;ENST00000488019.1_1_7:104941989-104942193:+|nuORF	ENSG00000182552|ENST00000326397|RWDD4	ENSG00000182552|ENST00000326397|RWDD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.300048828125	2	523.30005	1044.58555	0.67255	0.00035195	-0.55712	-0.00029154	0.11543	6.0404E-05	523.2997515909373	74.334	0.50256	74.334	74.127	74.63	0					25	16	2	0	0	0	0.13946	1	19045	19045		47.732	13.33	1	507250			5776	7300	2916	2916	8074	8074					0.06503797762843533
DPKAFLIEI	9	Unmodified	_DPKAFLIEI_					0	0	0		ENSG00000182552|ENST00000326397|RWDD4;ENST00000488019.1_1_7:104941989-104942193:+|nuORF	ENSG00000182552|ENST00000326397|RWDD4	ENSG00000182552|ENST00000326397|RWDD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3004150390625	2	523.30005	1044.58555	0.39392	0.00020614	0.083967	4.394E-05	0.47788	0.00025008	523.3000591164406	74.353	0.55575	74.406	74.176	74.732	0.052361					36	18	3	0	0	0	0.048871	1	19028	19028		53.317	15.141	1	556860			5777	7300	2916	2916	8075	8075					0.06503797762843533
DPKAFLIEI	9	Unmodified	_DPKAFLIEI_					0	0	0		ENSG00000182552|ENST00000326397|RWDD4;ENST00000488019.1_1_7:104941989-104942193:+|nuORF	ENSG00000182552|ENST00000326397|RWDD4	ENSG00000182552|ENST00000326397|RWDD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2998046875	2	523.30005	1044.58555	0.5639	0.00029509	-0.54123	-0.00028322	0.022674	1.1865E-05	523.2997202543346	74.468	0.46311	74.438	74.18	74.643	-0.030655					25	15	2	0	0	0	0.16826	1	19056	19056		40.725	40.725	1	607630			5778	7300	2916	2916	8076	8076					0.06503797762843533
DPKDGEAQK	9	Unmodified	_DPKDGEAQK_					0	0	0		nc|ENSG00000181982|Q6ZUS6-6|CCDC149;nc|ENSG00000181982|Q6ZUS6|CCDC149;nc|ENSG00000181982|Q6ZUS6-5|CCDC149;nc|ENSG00000181982|Q6ZUS6-4|CCDC149;ENSG00000181982|ENST00000635206|CCDC149	nc|ENSG00000181982|Q6ZUS6-6|CCDC149	nc|ENSG00000181982|Q6ZUS6-6|CCDC149	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.78485107421875	2	494.240721	986.466889	0.32151	0.0001589	0.4987	0.00024648	0.8202	0.00040538	494.2409006230546	17.84	0.30173	17.84	17.628	17.93	0					14	9	2	0	0	0	0.25988	1	1749	1749		3.9444	0	1	31508			5779	7262	2917	2917	8077	8077					-0.026886012128102266
DPKEKALQK	9	Unmodified	_DPKEKALQK_					0	0	0			REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2855834960938	2	528.806031	1055.59751	-0.23948	-0.00012664	-2.0648	-0.0010919	-2.3043	-0.0012185	528.8049896196402	34.66	0.35895	34.737	34.561	34.92	0.077381					14	12	2	0	0	0	0.25938	1	6801	6801		1.8442	0.19162	1	116330	+		5780	13638	2918	2918	8078	8078					0.07193414506014051
DPKKRYQVV	9	Unmodified	_DPKKRYQVV_					0	0	0		ENSG00000080511|ENST00000591589|RDH8	ENSG00000080511|ENST00000591589|RDH8	ENSG00000080511|ENST00000591589|RDH8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.8091430664062	2	566.827298	1131.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.739	1	26.728	26.228	27.228	-0.01156								0	0	0	0.23367	1	4442	4442		11.64	4.3511	1				5781	1157	2919	2919	8079	8079					0.07948809634262943
DPKLIYHI	8	Unmodified	_DPKLIYHI_					0	0	0			REV__ENST00000464269.5_1_20:13773870-13789559:+|nuORF	REV__ENST00000464269.5_1_20:13773870-13789559:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2370300292969	2	499.78711	997.559667	0.86542	0.00043253	-0.35079	-0.00017532	0.51463	0.00025721	499.7867609129667	56.251	0.61046	56.33	56.146	56.756	0.078671					28	22	2	0	0	0	0.34092	1	13452	13452		13.508	0	1	291180	+		5782	14258	2920	2920	8080	8080					0.06078948311221666
DPKLYGFVT	9	Unmodified	_DPKLYGFVT_					0	0	0			REV__ENSG00000102098|ENST00000251900|SCML2	REV__ENSG00000102098|ENST00000251900|SCML2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3013305664062	2	520.276575	1038.5386	0.45154	0.00023493	-1.1158	-0.0005805	-0.66422	-0.00034558	520.2755506534571	71.275	1.1667	71.25	70.521	71.688	-0.024864					49	41	2	0	0	0	0.24289	1	18058	18058		8.7454	0	1	507870	+		5783	14304	2921	2921	8081	8081					0.020869382117098212
DPKMLLQPF	9	Unmodified	_DPKMLLQPF_					0	0	0			REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A	REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3167724609375	2	544.794078	1087.5736	0.37622	0.00020496	-1.6166	-0.00088073	-1.2404	-0.00067576	545.2952320276996	93.136	0.88756	93.136	92.6	93.488	0					118	74	2	0	0	0	0.21389	1	24655	24655		25.399	7.2643	1	132440	+		5784	13920	2922	2922	8082	8082					0.03331857748003131
DPKRIKKC	8	Unmodified	_DPKRIKKC_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7903747558594	2	494.292037	986.56952	-0.084611	-4.1823E-05	0.58836	0.00029082	0.50375	0.000249	494.29240037898	12.572	0.26477	12.504	12.345	12.61	-0.06806					11	8	2	0	0	0	0.34434	1	169	169		0.79363	0	1	43431			5785	5220	2923	2923	8083	8083					0.07569813044949569
DPKTNIILLAK	11	Unmodified	_DPKTNIILLAK_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-5|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-5|EFCAB6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.2794494628906	3	409.255334	1224.74417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.047	1	18.929	18.429	19.429	-0.11739								0	0	0	0.38114	1	2118	2118		0.45452	0	1		+		5786	18481	2924	2924	8084	8084					0.1407909167114667
DPKVQINAI	9	Unmodified	_DPKVQINAI_					0	0	0		nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.8036193847656	2	499.287474	996.560395	0.30088	0.00015023	0.96258	0.0004806	1.2635	0.00063083	499.28794171942997	46.058	0.95693	46.058	45.746	46.703	0					62	34	3	0	0	0	0.22143	1	10418	10418		14.405	4.8614	1	855200			5787	4323	2925	2925	8085	8085					0.061977429602734446
DPKVQINAI	9	Unmodified	_DPKVQINAI_					0	0	0		nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8041076660156	2	499.287474	996.560395	0.17837	8.906E-05	1.1009	0.00054967	1.2793	0.00063873	499.28786284579616	46.042	1.0056	46.102	45.792	46.798	0.059834					56	36	3	0	0	0	0.12056	1	10317	10317		43.982	15.495	1	824350			5788	4323	2925	2925	8086	8086					0.061977429602734446
DPKVQINAI	9	Unmodified	_DPKVQINAI_					0	0	0		nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.80352783203125	2	499.287474	996.560395	0.32799	0.00016376	0.82411	0.00041147	1.1521	0.00057523	499.2879451986665	46.07	0.99544	46.135	45.811	46.807	0.065048					69	35	3	0	0	0	0.16039	1	10366	10366		35.612	24.813	1	949770			5789	4323	2925	2925	8087	8087					0.061977429602734446
DPLAALRV	8	Unmodified	_DPLAALRV_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.24310302734375	2	427.758352	853.502152	-0.032395	-1.3857E-05	0.31257	0.0001337	0.28017	0.00011985	427.7584480861504	58.331	0.52193	58.417	58.084	58.606	0.085617					29	18	2	0	0	0	0.29394	1	14183	14183		36.127	3.8215	1	228390			5790	3321	2926	2926	8088	8088					0.06954106105649771
DPLAALRV	8	Unmodified	_DPLAALRV_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	427.758352	853.502152	0.053342	2.2817E-05	0.32713	0.00013993	0.38047	0.00016275	427.7585615130598	58.5	0.55336	58.5	58.128	58.682	0	0.039426	-5.9403E-05	NaN	36.127	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244450			5791	3321	2926	2926							0.06954106105649771
DPLAALRV	8	Unmodified	_DPLAALRV_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	427.758352	853.502152	0.33657	0.00014397	0.75878	0.00032458	1.0954	0.00046855	427.75872363039355	58.48	0.38709	58.465	58.221	58.608	-0.014267	0.0046473	0.00030988	NaN	36.127	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268140			5792	3321	2926	2926							0.06954106105649771
DPLDKSIVI	9	Unmodified	_DPLDKSIVI_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42928644-42931004:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2899169921875	2	500.289682	998.564812	0.46835	0.00023431	0.023855	1.1935E-05	0.49221	0.00024625	500.2896556948074	57.383	1.1495	57.383	57.038	58.187	0					108	41	4	0	0	0	0.0048951	3	13847	13803;13847;13894		87.258	23.298	1	4212300			5793	2224	2927	2927	8089;8090;8091	8090					0.06547207383187015
DPLDKSIVI	9	Unmodified	_DPLDKSIVI_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42928644-42931004:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.289794921875	2	500.289682	998.564812	0.37222	0.00018622	0.23861	0.00011937	0.61083	0.00030559	500.28971603583864	57.277	1.0906	57.363	57.047	58.138	0.085617					101	39	4	0	0	0	0.010888	3	13808	13762;13808;13854		78.06	22.558	1	3940300			5794	2224	2927	2927	8092;8093;8094	8093					0.06547207383187015
DPLDKSIVI	9	Unmodified	_DPLDKSIVI_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42928644-42931004:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.28973388671875	2	500.289682	998.564812	0.1978	9.8958E-05	0.30402	0.0001521	0.50182	0.00025105	500.2897777861469	57.398	0.9174	57.381	57.035	57.953	-0.0172					89	33	4	0	0	0	0.010888	2	13814	13814;13859		78.06	18.692	1	4138300			5795	2224	2927	2927	8095;8096	8095					0.06547207383187015
DPLEQQHF	8	Unmodified	_DPLEQQHF_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2505187988281	2	507.237981	1012.46141	0.29501	0.00014964	0.19055	9.6654E-05	0.48556	0.0002463	507.238091538543	32.914	0.33247	32.969	32.73	33.063	0.055309					22	11	2	0	0	0	0.34319	1	6254	6254		5.7604	0.52976	1	164010	+		5796	14911	2928	2928	8097	8097					-0.044322800046188604
DPLGYIAKI	9	Unmodified	_DPLGYIAKI_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;KDM5C|p.S116Mfs*20|1|0.63|ENSG00000126012|chrX:53218280-53218281|-/TGAGACTGTAGAGGTCCAAGATCCGCCA|frameshift_variant;KDM5C|p.Q237Hfs*12|1|0.42|ENSG00000126012|chrX:53216104-53216144|TGAGGCCCAGGCCCATCATCTTGGGGCCTGCCCCATAGATC/-|frameshift_variant;KDM5C|p.E433Gfs*4|1|0.49|ENSG00000126012|chrX:53211600-53211600|T/-|frameshift_variant;KDM5C|p.G845Rfs*2|1|0.5|ENSG00000126012|chrX:53197854-53197860|GTAGACC/-|frameshift_variant;KDM5C|p.E886Rfs*49|1|0.59|ENSG00000126012|chrX:53197011-53197011|C/-|frameshift_variant;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;KDM5C|p.H988Tfs*18|1|0.35|ENSG00000126012|chrX:53196705-53196705|G/-|frameshift_variant	nc|ENSG00000012817|Q9BY66-2|KDM5D;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2869873046875	2	495.286943	988.559333	0.15344	7.5998E-05	-0.44018	-0.00021802	-0.28674	-0.00014202	495.28664467455036	65.207	0.71071	65.207	64.807	65.518	0					46	25	2	0	0	0	0.0033458	1	16231	16231		99.755	55.897	1	619690			5797	455;3253	2929	2929	8098	8098					0.0645952859136969
DPLGYIAKI	9	Unmodified	_DPLGYIAKI_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;KDM5C|p.S116Mfs*20|1|0.63|ENSG00000126012|chrX:53218280-53218281|-/TGAGACTGTAGAGGTCCAAGATCCGCCA|frameshift_variant;KDM5C|p.Q237Hfs*12|1|0.42|ENSG00000126012|chrX:53216104-53216144|TGAGGCCCAGGCCCATCATCTTGGGGCCTGCCCCATAGATC/-|frameshift_variant;KDM5C|p.E433Gfs*4|1|0.49|ENSG00000126012|chrX:53211600-53211600|T/-|frameshift_variant;KDM5C|p.G845Rfs*2|1|0.5|ENSG00000126012|chrX:53197854-53197860|GTAGACC/-|frameshift_variant;KDM5C|p.E886Rfs*49|1|0.59|ENSG00000126012|chrX:53197011-53197011|C/-|frameshift_variant;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;KDM5C|p.H988Tfs*18|1|0.35|ENSG00000126012|chrX:53196705-53196705|G/-|frameshift_variant	nc|ENSG00000012817|Q9BY66-2|KDM5D;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2867736816406	2	495.286943	988.559333	0.12495	6.1886E-05	-0.26917	-0.00013332	-0.14422	-7.1433E-05	495.2866736978917	65.089	0.75942	65.178	64.844	65.604	0.088882					56	27	3	0	0	0	0.015924	1	16186	16186		70.332	41.25	1	658350			5798	455;3253	2929	2929	8099	8099					0.0645952859136969
DPLGYIAKI	9	Unmodified	_DPLGYIAKI_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;KDM5C|p.S116Mfs*20|1|0.63|ENSG00000126012|chrX:53218280-53218281|-/TGAGACTGTAGAGGTCCAAGATCCGCCA|frameshift_variant;KDM5C|p.Q237Hfs*12|1|0.42|ENSG00000126012|chrX:53216104-53216144|TGAGGCCCAGGCCCATCATCTTGGGGCCTGCCCCATAGATC/-|frameshift_variant;KDM5C|p.E433Gfs*4|1|0.49|ENSG00000126012|chrX:53211600-53211600|T/-|frameshift_variant;KDM5C|p.G845Rfs*2|1|0.5|ENSG00000126012|chrX:53197854-53197860|GTAGACC/-|frameshift_variant;KDM5C|p.E886Rfs*49|1|0.59|ENSG00000126012|chrX:53197011-53197011|C/-|frameshift_variant;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;KDM5C|p.H988Tfs*18|1|0.35|ENSG00000126012|chrX:53196705-53196705|G/-|frameshift_variant	nc|ENSG00000012817|Q9BY66-2|KDM5D;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2868957519531	2	495.286943	988.559333	0.064174	3.1785E-05	-0.1186	-5.8741E-05	-0.054426	-2.6957E-05	495.2866302417933	65.149	0.67093	65.138	64.833	65.504	-0.011337					54	24	3	0	0	0	0.0046246	1	16222	16222		89.401	53.274	1	554130			5799	455;3253	2929	2929	8100	8100					0.0645952859136969
DPLKAYAR	8	Unmodified	_DPLKAYAR_					0	0	0			REV__Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|118|3|sense	REV__Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|118|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7223205566406	2	467.261259	932.507966	0.0081879	3.8259E-06	0.92219	0.0004309	0.93038	0.00043473	467.2611926046881	70.104	1.0595	70.104	69.787	70.847	0					51	38	2	0	0	0	0.33293	1	17732	17732		20.454	3.5113	1	115960	+		5800	13158	2930	2930	8101	8101					0.03901204617318399
DPLLLLTW	8	Unmodified	_DPLLLLTW_					0	0	0		nc|ENSG00000174527|Q8N1T3|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7835388183594	2	485.784036	969.553519	0.3667	0.00017814	-1.4063	-0.00068316	-1.0396	-0.00050503	485.7832864498358	88.904	0.66883	88.904	88.584	89.253	0					53	28	3	0	0	0	0.39068	2	23492	23473;23492		20.454	5.0233	1	165760			5801	12844	2931	2931	8102;8103	8103					0.06752430079700389
DPLQQWELV	9	Unmodified	_DPLQQWELV_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.802001953125	2	564.290214	1126.56587	0.13551	7.6464E-05	-1.801	-0.0010163	-1.6655	-0.00093985	564.2891975035036	16.291	0.48329	16.291	16.123	16.606	0					23	16	2	0	0	0	0.25988	1	1293	1293		3.9444	0.66309	1	42010			5802	1550	2932	2932	8104	8104					0.007654217520894235
DPLRVIILV	9	Unmodified	_DPLRVIILV_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A;nc|ENSG00000117362|Q96BI3-3|APH1A;ENST00000461320.5_1_1:150240172-150241210:-|nuORF	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.3397216796875	2	519.33951	1036.66447	0.75595	0.00039259	-0.0043873	-2.2785E-06	0.75156	0.00039031	519.3393401014341	78.466	1.2218	78.466	78.144	79.366	0					137	48	4	0	0	0	0.064268	2	20307	20261;20307		47.594	3.822	1	2967600			5803	2790	2933	2933	8105;8106	8106					0.14760069787803332
DPLRVIILV	9	Unmodified	_DPLRVIILV_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A;nc|ENSG00000117362|Q96BI3-3|APH1A;ENST00000461320.5_1_1:150240172-150241210:-|nuORF	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.339599609375	2	519.33951	1036.66447	0.59561	0.00030932	0.21426	0.00011127	0.80987	0.0004206	519.3394237160144	78.419	1.6917	78.477	78.164	79.856	0.058151					155	68	4	0	0	0	0.11201	1	20251	20251		36.506	6.6656	1	2868900			5804	2790	2933	2933	8107	8107					0.14760069787803332
DPLVEPVREPA	11	Unmodified	_DPLVEPVREPA_					0	0	0		ENST00000534553.5_1_11:61722629-61730618:+|nuORF	ENST00000534553.5_1_11:61722629-61730618:+|nuORF	ENST00000534553.5_1_11:61722629-61730618:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.23248291015625	3	407.88731	1220.6401	-0.28755	-0.00011729	-2.2234	-0.0009069	-2.5109	-0.0010242	407.88586604411125	19.211	0.47973	19.211	18.952	19.431	0					18	16	2	0	0	0	0.33119	1	2120	2120		2.6312	0.72486	1	40178			5805	11661	2934	2934	8108	8108					0.03860764843625475
DPMKARVVL	9	Oxidation (M)	_DPM(Oxidation (M))KARVVL_		DPM(1)KARVVL		DPM(48)KARVVL	0	0	1		nc|ENSG00000143742|P49458-2|SRP9;ENSG00000143742|ENST00000304786|SRP9	nc|ENSG00000143742|P49458-2|SRP9	nc|ENSG00000143742|P49458-2|SRP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.797119140625	2	522.797152	1043.57975	0.048359	2.5282E-05	-0.076586	-4.0039E-05	-0.028227	-1.4757E-05	522.7971063295306	28.047	0.52819	28.047	27.793	28.322	0.00046921					41	18	3	0	0	0	0.063853	1	4847	4847		47.749	32.91	1	434920			5806	4543	2935	2935	8109	8109		572			0.05970375979518394
DPNGEAEILVF	11	Unmodified	_DPNGEAEILVF_					0	0	0		ENSG00000203908|ENST00000370367|KHDC3L	ENSG00000203908|ENST00000370367|KHDC3L	ENSG00000203908|ENST00000370367|KHDC3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.2987670898438	2	602.298236	1202.58192	0.45959	0.00027681	0.22594	0.00013609	0.68554	0.0004129	602.2984078152318	80.443	0.44466	80.443	80.124	80.569	0					24	16	2	0	0	0	0.46655	1	20847	20847		2.4985	0.84587	1	144260			5807	8192	2936	2936	8110	8110					-0.011269168016724507
DPNGEAEILVF	11	Unmodified	_DPNGEAEILVF_					0	0	0		ENSG00000203908|ENST00000370367|KHDC3L	ENSG00000203908|ENST00000370367|KHDC3L	ENSG00000203908|ENST00000370367|KHDC3L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.2986450195312	2	602.298236	1202.58192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.12	1	83.193	82.693	83.693	0.073097								0	0	0	0.36839	1	21723	21723		4.1895	1.1943	1				5808	8192	2936	2936	8111	8111					-0.011269168016724507
DPNQEFDDLL	10	Unmodified	_DPNQEFDDLL_					0	0	0			REV__ENST00000512558.5_1_5:79729945-79747536:+|nuORF	REV__ENST00000512558.5_1_5:79729945-79747536:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.270751953125	2	603.269675	1204.5248	0.23836	0.0001438	0.61595	0.00037158	0.85431	0.00051538	603.270195143284	59.939	0.5906	59.928	59.683	60.273	-0.011486					41	20	3	0	0	0	0.3001	1	14661	14661		20.415	1.1575	1	945510	+		5809	13521	2937	2937	8112	8112					-0.06928384078037197
DPNRLTSL	8	Unmodified	_DPNRLTSL_					0	0	0			REV__ENST00000360105.8_1_19:13136243-13184244:+|nuORF	REV__ENST00000360105.8_1_19:13136243-13184244:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.1947326660156	2	458.248349	914.482145	-0.10365	-4.7499E-05	-0.36856	-0.00016889	-0.47221	-0.00021639	458.24843188365736	28.319	0.57392	28.315	28.055	28.629	-0.0042572					49	20	4	0	0	0	0.32099	1	4918	4918		25.399	0	1	191300	+		5810	20249	2938	2938	8113	8113					0.021483103750369992
DPNSMTSSRIQ	11	Unmodified	_DPNSMTSSRIQ_					0	0	0			REV__nc|ENSG00000150773|Q8WWB5-3|PIH1D2	REV__nc|ENSG00000150773|Q8WWB5-3|PIH1D2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.89459228515625	3	412.527676	1234.5612	0.036147	1.4912E-05	0.029224	1.2056E-05	0.065371	2.6967E-05	412.5277730468493	22.7	0.41665	22.612	22.403	22.82	-0.087608					25	14	2	0	0	0	0.33149	1	3207	3207		0.36667	0	1	65464	+		5811	16511	2939	2939	8114	8114					-0.04669830452962742
DPNTVAAREM	10	Unmodified	_DPNTVAAREM_					0	0	0		ENSG00000164841|ENST00000297459|TMEM74	ENSG00000164841|ENST00000297459|TMEM74	ENSG00000164841|ENST00000297459|TMEM74	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.3262939453125	2	552.26113	1102.50771	0.36416	0.00020111	1.1882	0.00065617	1.5523	0.00085729	552.2602004555214	67.768	0.40952	67.768	67.561	67.97	0					31	13	4	0	0	0	0.31323	1	17066	17066		15.248	5.901	1	191090			5812	5883	2940	2940	8115	8115					-0.03944583164843607
DPPCRHQSCE	10	Unmodified	_DPPCRHQSCE_					0	0	0		ENST00000356990.9_2_1:33402409-33402892:-|nuORF;RNF19B|p.S697Rfs*15|1|0.25|ENSG00000116514|chr1:32936917-32936917|G/-|frameshift_variant;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B	ENST00000356990.9_2_1:33402409-33402892:-|nuORF	ENST00000356990.9_2_1:33402409-33402892:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.2341918945312	2	586.23459	1170.45463	-0.0048832	-2.8627E-06	0.5234	0.00030683	0.51852	0.00030397	586.2349018141435	97.987	0.52998	97.987	97.786	98.316	0					145	61	3	0	0	0	0.38773	1	26176	26176		5.7319	5.7319	1	514780			5813	2728	2941	2941	8116	8116					-0.12378284219175839
DPPGRQKL	8	Unmodified	_DPPGRQKL_					0	0	0		nc|ENSG00000149639|O94964-4|MTCL2	nc|ENSG00000149639|O94964-4|MTCL2	nc|ENSG00000149639|O94964-4|MTCL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.7586669921875	2	455.758884	909.503215	-0.15932	-7.2613E-05	-1.7241	-0.00078579	-1.8834	-0.0008584	455.7588042432792	24.861	2.5202	24.829	23.973	26.493	-0.031408					170	88	4	0	0	0	0.31088	1	3893	3893		28.487	1.6032	1	594420			5814	12755	2942	2942	8117	8117					0.044843204745689036
DPPGRQKL	8	Unmodified	_DPPGRQKL_					0	0	0		nc|ENSG00000149639|O94964-4|MTCL2	nc|ENSG00000149639|O94964-4|MTCL2	nc|ENSG00000149639|O94964-4|MTCL2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	455.758884	909.503215	0.076386	3.4814E-05	-2.176	-0.00099175	-2.0996	-0.00095693	455.75864965332136	24.822	2.4931	24.822	23.917	26.41	0	-0.0091484	-6.7652E-05	NaN	28.487	196	86	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	598250			5815	12755	2942	2942							0.044843204745689036
DPPHAICV	8	Unmodified	_DPPHAICV_					0	0	0		ENST00000527076.1_1_16:1411666-1412341:+|nuORF	ENST00000527076.1_1_16:1411666-1412341:+|nuORF	ENST00000527076.1_1_16:1411666-1412341:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2528076171875	2	426.207638	850.400723	-0.40462	-0.00017245	-3.1044	-0.0013231	-3.5091	-0.0014956	426.2063467294448	12.863	0.19434	12.863	12.783	12.977	0					10	6	2	0	0	0	0.34319	1	252	252		5.7604	3.4577	1	15187			5816	11566	2943	2943	8118	8118					-0.030460885885531752
DPPIARLSV	9	Unmodified	_DPPIARLSV_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB;ENST00000526210.1_1_11:62402291-62407104:-|nuORF;ENST00000524437.5_1_11:62402291-62406896:-|nuORF	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.28253173828125	2	484.282192	966.549831	0.38122	0.00018462	0.39927	0.00019336	0.78049	0.00037798	484.28232185818877	51.275	0.69946	51.275	50.949	51.648	0					44	25	2	0	0	0	0.0040516	1	11967	11967		93.938	23.606	1	2453900			5817	1361	2944	2944	8119	8119					0.06521760305849966
DPPIARLSV	9	Unmodified	_DPPIARLSV_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB;ENST00000526210.1_1_11:62402291-62407104:-|nuORF;ENST00000524437.5_1_11:62402291-62406896:-|nuORF	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2825012207031	2	484.282192	966.549831	0.27396	0.00013268	0.44726	0.0002166	0.72123	0.00034928	484.28231261714984	51.255	0.55452	51.302	51.092	51.647	0.046574					45	20	4	0	0	0	0.0066776	1	11974	11974		84.522	22.92	1	2535500			5818	1361	2944	2944	8120	8120					0.06521760305849966
DPPIARLSV	9	Unmodified	_DPPIARLSV_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB;ENST00000526210.1_1_11:62402291-62407104:-|nuORF;ENST00000524437.5_1_11:62402291-62406896:-|nuORF	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.28253173828125	2	484.282192	966.549831	0.37857	0.00018333	0.38186	0.00018493	0.76043	0.00036826	484.28226643849393	51.315	1.1094	51.324	51.042	52.151	0.0095634					54	41	2	0	0	0	0.0040516	1	11979	11979		93.938	32.336	1	2368700			5819	1361	2944	2944	8121	8121					0.06521760305849966
DPPIFHPMHF	10	Unmodified	_DPPIFHPMHF_					0	0	0			REV__nc|ENSG00000174672|Q8IWQ3-6|BRSK2	REV__nc|ENSG00000174672|Q8IWQ3-6|BRSK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.5872802734375	3	413.198943	1236.575	0.070857	2.9278E-05	1.3809	0.0005706	1.4518	0.00059988	413.1994341713961	36.199	0.90076	36.199	35.773	36.673	0					62	32	3	0	0	0	0.3156	1	7279	7279		3.5871	0.26742	1	379460	+		5820	16904	2945	2945	8122	8122					-0.033825081632130605
DPPIFHPMHF	10	Unmodified	_DPPIFHPMHF_					0	0	0			REV__nc|ENSG00000174672|Q8IWQ3-6|BRSK2	REV__nc|ENSG00000174672|Q8IWQ3-6|BRSK2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	413.198943	1236.575	0.41119	0.0001699	0.99843	0.00041255	1.4096	0.00058245	413.19933143529505	36.045	0.98343	36.132	35.671	36.654	0.086246	-0.019268	-0.00014215	NaN	3.5871	63	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475420	+		5821	16904	2945	2945							-0.033825081632130605
DPPKVILI	8	Unmodified	_DPPKVILI_					0	0	0		ENST00000592087.1_1_19:36980552-36981209:+|nuORF	ENST00000592087.1_1_19:36980552-36981209:+|nuORF	ENST00000592087.1_1_19:36980552-36981209:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.7866516113281	2	447.786579	893.558604	0.21087	9.4427E-05	0.2588	0.00011589	0.46968	0.00021032	447.7864458615843	60.44	0.72168	60.44	60.098	60.819	0					70	26	3	0	0	0	0.050146	3	14728	14728;14773;14825		78.149	24.574	1	2447400			5822	12192	2946	2946	8123;8124;8125	8123					0.1075673394233263
DPPKVILI	8	Unmodified	_DPPKVILI_					0	0	0		ENST00000592087.1_1_19:36980552-36981209:+|nuORF	ENST00000592087.1_1_19:36980552-36981209:+|nuORF	ENST00000592087.1_1_19:36980552-36981209:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.78662109375	2	447.786579	893.558604	-0.10911	-4.886E-05	0.47636	0.00021331	0.36725	0.00016445	447.7865541022494	60.284	0.8754	60.379	60.019	60.894	0.095089					73	31	3	0	0	0	0.029748	3	14703	14703;14747;14797		88.904	32.362	1	2621100			5823	12192	2946	2946	8126;8127;8128	8126					0.1075673394233263
DPPKVILI	8	Unmodified	_DPPKVILI_					0	0	0		ENST00000592087.1_1_19:36980552-36981209:+|nuORF	ENST00000592087.1_1_19:36980552-36981209:+|nuORF	ENST00000592087.1_1_19:36980552-36981209:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.78662109375	2	447.786579	893.558604	0.23357	0.00010459	0.30959	0.00013863	0.54316	0.00024322	447.7864903903303	60.331	0.73114	60.32	60.026	60.757	-0.011486					65	26	3	0	0	0	0.050146	3	14756	14707;14756;14810		78.149	24.574	1	2598300			5824	12192	2946	2946	8129;8130;8131	8130					0.1075673394233263
DPPLSLLR	8	Unmodified	_DPPLSLLR_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2589416503906	2	455.77146	909.528367	0.065358	2.9788E-05	-0.87874	-0.0004005	-0.81338	-0.00037072	455.7709796120398	24.88	0.64217	24.824	24.544	25.186	-0.055931					42	22	3	0	0	0	0.42758	2	3873	3873;3890		13.508	4.1604	1	119960	+		5825	16948	2947	2947	8132;8133	8132					0.06998375277134983
DPPLSLLR	8	Unmodified	_DPPLSLLR_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.75872802734375	2	455.77146	909.528367	0.065358	2.9788E-05	-0.87874	-0.0004005	-0.81338	-0.00037072	455.7709796120398	24.88	0.64217	24.824	24.544	25.186	-0.055931					42	22	3	0	0	0	0.34092	1	3890	3890		13.508	4.1604	1	119960	+		5826	16948	2947	2947	8134	8134					0.06998375277134983
DPPLSLLR	8	Unmodified	_DPPLSLLR_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.7586669921875	2	455.77146	909.528367	-0.15496	-7.0625E-05	-0.39528	-0.00018016	-0.55024	-0.00025078	455.7710920992589	24.822	0.83878	24.791	24.456	25.294	-0.031408					39	28	2	0	0	0	0.4419	1	3893	3893		8.5933	3.3626	1	96373	+		5827	16948	2947	2947	8135	8135					0.06998375277134983
DPPLSPLHA	9	Unmodified	_DPPLSPLHA_					0	0	0			REV__nc|ENSG00000111642|Q14839-2|CHD4	REV__nc|ENSG00000111642|Q14839-2|CHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7532653808594	2	473.753267	945.491981	0.35222	0.00016686	-0.087843	-4.1616E-05	0.26437	0.00012525	473.75318007131887	45	1.7873	45.068	44.065	45.852	0.068569					192	64	5	0	0	0	0.17787	1	10155	10155		26.884	0.61551	1	4245500	+		5828	22942	2948	2948	8136	8136					0.017054983804200674
DPPLVCHL	8	Unmodified	_DPPLVCHL_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-10|HYDIN;nc|ENSG00000157423|Q4G0P3-8|HYDIN;nc|ENSG00000157423|Q4G0P3-5|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.2316589355469	2	447.231113	892.447674	0.26502	0.00011852	0.38061	0.00017022	0.64562	0.00028874	447.23118270635996	70.96	0.99658	70.96	70.406	71.402	0					52	35	2	0	0	0	0.34092	1	17995	17995		8.5933	0	1	225500			5829	5305	2949	2949	8137	8137					-0.002852290374221411
DPPLVQRL	8	Unmodified	_DPPLVQRL_					0	0	0		nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ENSG00000165801|ENST00000298694|ARHGEF40;ENST00000555232.5_1_14:21538555-21549271:+|nuORF	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7525939941406	2	469.276909	936.539266	0.36852	0.00017294	0.10709	5.0255E-05	0.47561	0.00022319	469.2768980549295	47.08	0.39763	47.08	46.904	47.302	0					22	13	2	0	0	0	0.23527	1	10671	10671		56.177	27.69	1	272230			5830	6001	2950	2950	8138	8138					0.06845777651415119
DPPLVQRL	8	Unmodified	_DPPLVQRL_					0	0	0		nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ENSG00000165801|ENST00000298694|ARHGEF40;ENST00000555232.5_1_14:21538555-21549271:+|nuORF	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7527770996094	2	469.276909	936.539266	0.81193	0.00038102	-0.56122	-0.00026337	0.25071	0.00011765	469.2765750661882	47.105	0.39465	47.159	46.939	47.334	0.054371					20	13	2	0	0	0	0.27213	1	10644	10644		43.858	22.112	1	263530			5831	6001	2950	2950	8139	8139					0.06845777651415119
DPPPPMETI	9	Oxidation (M)	_DPPPPM(Oxidation (M))ETI_		DPPPPM(1)ETI		DPPPPM(92)ETI	0	0	1		ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7366943359375	2	506.736425	1011.4583	0.12959	6.5666E-05	0.45734	0.00023175	0.58693	0.00029742	506.7365013549916	42.178	1.5243	42.178	41.809	43.333	0					98	55	2	0	0	0	0.0042343	1	9209	9209		92.491	50.397	1	1080700			5832	7613	2951	2951	8140	8140		840			-0.046972911736247625
DPPPPMETI	9	Oxidation (M)	_DPPPPM(Oxidation (M))ETI_		DPPPPM(1)ETI		DPPPPM(92)ETI	0	0	1		ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.73651123046875	2	506.736425	1011.4583	0.34076	0.00017267	0.20599	0.00010438	0.54674	0.00027705	506.7363084985389	42.053	1.4116	42.138	41.802	43.214	0.085201					107	51	3	0	0	0	0.0042343	2	9159	9114;9159		92.491	56.785	1	1107000			5833	7613	2951	2951	8141;8142	8142		840			-0.046972911736247625
DPPPPMETI	9	Oxidation (M)	_DPPPPM(Oxidation (M))ETI_		DPPPPM(1)ETI		DPPPPM(100)ETI	0	0	1		ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.73638916015625	2	506.736425	1011.4583	0.40263	0.00020403	0.21253	0.0001077	0.61517	0.00031173	506.7362813078688	41.92	1.4084	42.017	41.77	43.179	0.096622					117	50	3	0	0	0	0.0028127	2	9089	9089;9137		103.75	61.654	1	879860			5834	7613	2951	2951	8143;8144	8143		840			-0.046972911736247625
DPPYSRVI	8	Unmodified	_DPPYSRVI_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7535400390625	2	473.753267	945.491981	0.26419	0.00012516	-0.049131	-2.3276E-05	0.21506	0.00010189	473.7532312447554	45.224	1.8275	45.224	44.09	45.917	0					202	66	6	0	0	0	0.019016	5	10091	9992;10041;10091;10138;10183		103.35	52.498	1	3582200			5835	8175	2952	2952	8145;8146;8147;8148;8149	8147					0.01705498380431436
DPPYSRVI	8	Unmodified	_DPPYSRVI_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7533874511719	2	473.753267	945.491981	0.35222	0.00016686	-0.087843	-4.1616E-05	0.26437	0.00012525	473.75318007131887	45	1.7873	45.068	44.065	45.852	0.068569					192	64	5	0	0	0	0.019016	4	9996	9948;9996;10043;10092		103.35	52.498	1	4245500			5836	8175	2952	2952	8150;8151;8152;8153	8151					0.01705498380431436
DPPYSRVI	8	Unmodified	_DPPYSRVI_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.75335693359375	2	473.753267	945.491981	0.37776	0.00017897	-0.22582	-0.00010698	0.15194	7.1984E-05	473.7531757599623	45.019	1.6149	45.095	44.122	45.737	0.075047					201	59	6	0	0	0	0.026963	4	10007	9959;10007;10051;10101		92.653	48.795	1	4220100			5837	8175	2952	2952	8154;8155;8156;8157	8155					0.01705498380431436
DPPYTHTI	8	Unmodified	_DPPYTHTI_					0	0	0		nc|ENSG00000151491|Q12929-2|EPS8;ENSG00000151491|ENST00000281172|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.22955322265625	2	472.229625	942.444697	0.45863	0.00021658	-0.73832	-0.00034866	-0.27969	-0.00013208	472.22938810560635	37.208	1.0678	37.208	36.7	37.767	0					87	37	3	0	0	0	0.026838	3	7628	7582;7628;7680		92.822	48.964	1	1009500			5838	4966	2953	2953	8158;8159;8160	8159					-0.028827808905589336
DPPYTHTI	8	Unmodified	_DPPYTHTI_					0	0	0		nc|ENSG00000151491|Q12929-2|EPS8;ENSG00000151491|ENST00000281172|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2295837402344	2	472.229625	942.444697	0.26107	0.00012328	-0.17105	-8.0773E-05	0.09002	4.251E-05	472.2294813739095	37.051	1.0586	37.138	36.656	37.714	0.08741					61	38	2	0	0	0	0.026838	3	7599	7550;7599;7661		92.822	56.695	1	938660			5839	4966	2953	2953	8161;8162;8163	8162					-0.028827808905589336
DPPYTHTI	8	Unmodified	_DPPYTHTI_					0	0	0		nc|ENSG00000151491|Q12929-2|EPS8;ENSG00000151491|ENST00000281172|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2296142578125	2	472.229625	942.444697	0.45826	0.0002164	-0.41526	-0.0001961	0.043002	2.0307E-05	472.22937609320707	37.071	0.85964	37.164	36.713	37.573	0.093014					58	31	2	0	0	0	0.042854	3	7572	7525;7572;7623		81.613	45.486	1	1037400			5840	4966	2953	2953	8164;8165;8166	8165					-0.028827808905589336
DPQRHSDLH	9	Unmodified	_DPQRHSDLH_					0	0	0			REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423	REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3204956054688	2	552.762686	1103.51082	0.022523	1.245E-05	1.0591	0.00058545	1.0817	0.0005979	553.265276743469	13.495	0.42879	13.495	13.365	13.794	0					28	14	3	0	0	0	0.25938	1	421	421		4.3292	1.334	1	57098	+		5841	14343	2954	2954	8167	8167					-0.03679571995803599
DPQSRSLKNA	10	Unmodified	_DPQSRSLKNA_					0	0	0		nc|ENSG00000185264|O43247-2|CIMIP4;ENSG00000185264|ENST00000381821|TEX33	nc|ENSG00000185264|O43247-2|CIMIP4	nc|ENSG00000185264|O43247-2|CIMIP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.3141479492188	2	558.293819	1114.57309	-0.011904	-6.6459E-06	-0.24399	-0.00013622	-0.25589	-0.00014286	558.2937095853669	13.302	0.32039	13.203	13.069	13.389	-0.099291					23	10	3	0	0	0	0.40262	1	408	408		2.9952	2.9952	1	144610			5842	7518	2955	2955	8168	8168					0.020381543525445522
DPRHGRYLTV	10	Unmodified	_DPRHGRYLTV_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2193908691406	3	405.219395	1212.63635	-0.36758	-0.00014895	-0.060837	-2.4653E-05	-0.42842	-0.0001736	405.21949102133647	27.707	1.3751	27.707	27.324	28.699	0					150	47	5	0	0	0	0.20968	4	4703	4703;4752;4845;4888		31.462	17.244	1	5464000			5843	7841;8646	2956	2956	8169;8170;8171;8172	8169					0.03854139860391115
DPRHGRYLTV	10	Unmodified	_DPRHGRYLTV_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.21954345703125	3	405.219395	1212.63635	-0.43231	-0.00017518	0.0020388	8.2618E-07	-0.43027	-0.00017435	405.2195067718336	27.693	1.4058	27.671	27.266	28.672	-0.021412					140	49	4	0	0	0	0.21811	3	4802	4700;4748;4802		30.431	16.213	1	6196300			5844	7841;8646	2956	2956	8173;8174;8175	8175					0.03854139860391115
DPRHGRYLTV	10	Unmodified	_DPRHGRYLTV_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2192077636719	3	405.219395	1212.63635	-0.45565	-0.00018464	-0.037873	-1.5347E-05	-0.49353	-0.00019999	405.21949046639514	27.687	1.5378	27.676	27.29	28.828	-0.01156					152	53	5	0	0	0	0.20104	4	4698	4698;4743;4801;4849		32.518	18.3	1	6508000			5845	7841;8646	2956	2956	8176;8177;8178;8179	8176					0.03854139860391115
DPRNVWGFLA	10	Unmodified	_DPRNVWGFLA_					0	0	0		ENST00000480194.5_1_6:10748006-10756748:+|nuORF;ENSG00000137210|ENST00000379542|TMEM14B	ENST00000480194.5_1_6:10748006-10756748:+|nuORF	ENST00000480194.5_1_6:10748006-10756748:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.8021240234375	2	587.803823	1173.59309	0.22089	0.00012984	-1.3722	-0.00080661	-1.1513	-0.00067677	587.8028472449399	19.426	0.69444	19.31	18.947	19.642	-0.11592					49	23	3	0	0	0	0.40262	2	2220	2220;2240		2.9952	0.49676	1	81809			5846	11004	2957	2957	8180;8181	8180					0.01323950083155978
DPRNVWGFLA	10	Unmodified	_DPRNVWGFLA_					0	0	0		ENST00000480194.5_1_6:10748006-10756748:+|nuORF;ENSG00000137210|ENST00000379542|TMEM14B	ENST00000480194.5_1_6:10748006-10756748:+|nuORF	ENST00000480194.5_1_6:10748006-10756748:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.8018798828125	2	587.803823	1173.59309	0.32704	0.00019224	-2.2214	-0.0013058	-1.8944	-0.0011135	587.8026187991563	19.461	0.98225	19.406	19.08	20.062	-0.055693					70	34	3	0	0	0	0.40262	1	2212	2212		2.9952	0.49676	1	80217			5847	11004	2957	2957	8182	8182					0.01323950083155978
DPRSSPLI	8	Unmodified	_DPRSSPLI_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.74542236328125	2	442.745442	883.476331	-0.093361	-4.1335E-05	0.026512	1.1738E-05	-0.066848	-2.9597E-05	442.74542275935084	38.603	0.58157	38.603	38.377	38.958	0					37	20	2	0	0	0	0.31768	1	8073	8073		27.629	7.1752	1	318100			5848	7339	2958	2958	8183	8183					0.02993211863383749
DPRSSPLI	8	Unmodified	_DPRSSPLI_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.74542236328125	2	442.745442	883.476331	0.31699	0.00014035	-0.16759	-7.4201E-05	0.1494	6.6145E-05	442.74533479064195	38.535	0.6356	38.633	38.348	38.984	0.097527					38	22	2	0	0	0	0.28547	1	8028	8028		39.95	3.8227	1	360190			5849	7339	2958	2958	8184	8184					0.02993211863383749
DPRSSPLI	8	Unmodified	_DPRSSPLI_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	442.745442	883.476331	0.17549	7.7698E-05	-0.036664	-1.6233E-05	0.13883	6.1465E-05	442.74531445138376	38.511	0.6281	38.602	38.373	39.001	0.090881	-0.010751	4.9051E-05	NaN	47.749	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389840			5850	7339	2958	2958							0.02993211863383749
DPRVSINVV	9	Unmodified	_DPRVSINVV_					0	0	0		ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7850646972656	2	499.785099	997.555644	0.37364	0.00018674	0.085798	4.288E-05	0.45943	0.00022962	499.7852047588091	49.882	1.025	49.882	49.408	50.433	0					102	37	4	0	0	0	0.060198	1	11490	11490		63.227	12.372	1	4210400			5851	2524	2959	2959	8185	8185					0.05676858817514585
DPRVSINVV	9	Unmodified	_DPRVSINVV_					0	0	0		ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7852783203125	2	499.785099	997.555644	0.49313	0.00024646	-0.074344	-3.7156E-05	0.41879	0.0002093	499.78505142156854	49.852	1.3587	49.897	49.102	50.461	0.044891					123	50	4	0	0	0	0.060198	1	11525	11525		71.708	27.301	1	4497700			5852	2524	2959	2959	8186	8186					0.05676858817514585
DPRVSINVV	9	Unmodified	_DPRVSINVV_					0	0	0		ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	ENSG00000113716|ENST00000502717|HMGXB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7855224609375	2	499.785099	997.555644	0.46546	0.00023263	-0.054007	-2.6992E-05	0.41146	0.00020564	499.7851093430197	49.893	1.0932	49.914	49.372	50.465	0.020691					106	40	4	0	0	0	0.060198	1	11515	11515		55.235	10.828	1	4059900			5853	2524	2959	2959	8187	8187					0.05676858817514585
DPSAKYLRLL	10	Unmodified	_DPSAKYLRLL_					0	0	0			REV__ENSG00000196961|ENST00000354293|AP2A1	REV__ENSG00000196961|ENST00000354293|AP2A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.2902221679688	2	588.342781	1174.67101	0.075828	4.4613E-05	-0.87041	-0.0005121	-0.79459	-0.00046749	588.3421747704257	46.348	0.56426	46.348	46.168	46.732	0					30	20	2	0	0	0	0.29112	1	10442	10442		14.405	0.18721	1	588210	+		5854	18700	2960	2960	8188	8188					0.09065962948511697
DPSDNYSKL	9	Unmodified	_DPSDNYSKL_					0	0	0			REV__ENST00000464554.5_1_2:232880330-232952439:+|nuORF	REV__ENST00000464554.5_1_2:232880330-232952439:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7413940429688	2	519.740554	1037.46655	0.32703	0.00016997	0.56332	0.00029278	0.89035	0.00046275	519.7412171414843	30.896	0.87872	30.896	30.674	31.553	0					86	31	4	0	0	0	0.20626	1	5749	5749		22.736	7.898	1	1225700	+		5855	16240	2961	2961	8189	8189					-0.050680209326628756
DPSDNYSKL	9	Unmodified	_DPSDNYSKL_					0	0	0			REV__ENST00000464554.5_1_2:232880330-232952439:+|nuORF	REV__ENST00000464554.5_1_2:232880330-232952439:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7921142578125	2	519.740554	1037.46655	0.32703	0.00016997	0.56332	0.00029278	0.89035	0.00046275	519.7412171414843	30.896	0.87872	30.896	30.674	31.553	0					86	31	4	0	0	0	0.22674	1	5742	5742		22.736	6.8891	1	1225700	+		5856	16240	2961	2961	8190	8190					-0.050680209326628756
DPSDNYSKL	9	Unmodified	_DPSDNYSKL_					0	0	0			REV__ENST00000464554.5_1_2:232880330-232952439:+|nuORF	REV__ENST00000464554.5_1_2:232880330-232952439:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.741455078125	2	519.740554	1037.46655	0.21245	0.00011042	0.85709	0.00044547	1.0695	0.00055589	519.7412506450569	30.871	0.76673	30.899	30.638	31.405	0.027159					76	27	4	0	0	0	0.16283	1	5704	5704		29.082	7.3349	1	1254800	+		5857	16240	2961	2961	8191	8191					-0.050680209326628756
DPSELRAWAR	10	Unmodified	_DPSELRAWAR_					0	0	0			REV__ENST00000291294.6_1_19:47127418-47128351:-|nuORF	REV__ENST00000291294.6_1_19:47127418-47128351:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.3662719726562	2	600.809636	1199.60472	0.13907	8.3554E-05	3.2474	0.0019511	3.3865	0.0020346	601.3135106017204	13.143	0.11554	13.143	13.058	13.174	0					5	3	2	0	0	0	0.32139	1	315	315		1.3295	0.13619	1	13917	+		5858	19755	2962	2962	8192	8192					0.01290147106465156
DPSKALHLW	9	Unmodified	_DPSKALHLW_					0	0	0		ENST00000605571.1_1_4:1715074-1715257:+|nuORF	ENST00000605571.1_1_4:1715074-1715257:+|nuORF	ENST00000605571.1_1_4:1715074-1715257:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2377319335938	2	533.787641	1065.56073	0.64273	0.00034308	2.1983	0.0011734	2.841	0.0015165	534.2919697214464	75.379	0.77122	75.347	75.031	75.803	-0.031487					41	28	2	0	0	0	0.25123	1	19324	19324		12.241	1.4167	1	341250			5859	12286	2963	2963	8193	8193					0.030571626801247476
DPSKKQPIF	9	Unmodified	_DPSKKQPIF_					0	0	0			REV__SECISBP2L|p.V789Sfs*2|1|0.21|ENSG00000138593|chr15:48999871-48999872|-/T|frameshift_variant	REV__SECISBP2L|p.V789Sfs*2|1|0.21|ENSG00000138593|chr15:48999871-48999872|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2950439453125	2	530.295299	1058.57605	0.44011	0.00023339	-0.42287	-0.00022424	0.017237	9.1408E-06	530.2951662476534	92.52	1.4636	92.52	91.507	92.971	0					163	108	3	0	0	0	0.24688	1	24634	24634		14.838	3.198	1	166010	+		5860	15933	2964	2964	8194	8194					0.04910029477309763
DPSLDERKR	9	Unmodified	_DPSLDERKR_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.3140869140625	2	558.293819	1114.57309	-0.035454	-1.9794E-05	0.1125	6.2808E-05	0.077046	4.3014E-05	558.2937875341572	13.219	0.36938	13.219	13.058	13.427	0					31	12	4	0	0	0	0.33276	1	387	387		3.9444	0.94915	1	145240	+		5861	15880	2965	2965	8195	8195					0.02038154352521815
DPSQPQTTI	9	Unmodified	_DPSQPQTTI_					0	0	0		ENSG00000100393|ENST00000263253|EP300;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7433776855469	2	493.743096	985.47164	0.50895	0.00025129	0.014983	7.3976E-06	0.52393	0.00025869	493.74301946210755	37.883	0.75994	37.883	37.587	38.347	0					59	26	3	0	0	0	0.0079761	1	7843	7843		82.529	46.402	1	723660			5862	1586	2966	2966	8196	8196					-0.021677170700399984
DPSQPQTTI	9	Unmodified	_DPSQPQTTI_					0	0	0		ENSG00000100393|ENST00000263253|EP300;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.74322509765625	2	493.743096	985.47164	0.45356	0.00022394	-0.080887	-3.9937E-05	0.37268	0.00018401	493.74298686099837	37.822	0.70589	37.913	37.667	38.373	0.090881					63	25	3	0	0	0	0.058995	1	7878	7878		49.554	22.671	1	764530			5863	1586	2966	2966	8197	8197					-0.021677170700399984
DPSQPQTTI	9	Unmodified	_DPSQPQTTI_					0	0	0		ENSG00000100393|ENST00000263253|EP300;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.743408203125	2	493.743096	985.47164	0.32288	0.00015942	0.11592	5.7237E-05	0.43881	0.00021666	493.7431241733036	37.809	0.86102	37.906	37.604	38.465	0.097527					67	30	3	0	0	0	0.04299	2	7790	7790;7840		55.503	28.619	1	812720			5864	1586	2966	2966	8198;8199	8198					-0.021677170700399984
DPSSGHPR	8	Unmodified	_DPSSGHPR_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.5654296875	2	426.701566	851.388579	-0.43907	-0.00018735	0.29934	0.00012773	-0.13973	-5.9623E-05	426.7016548025552	13.475	0.32643	13.376	13.217	13.544	-0.099291					21	11	3	0	0	0	0.34378	1	471	471		3.9444	0	1	40333			5865	5830	2967	2967	8200	8200					-0.04305989007377775
DPSSGHPR	8	Unmodified	_DPSSGHPR_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.5653381347656	2	426.701566	851.388579	-0.42704	-0.00018222	-0.12884	-5.4978E-05	-0.55588	-0.0002372	426.7015485486677	13.487	0.3284	13.419	13.245	13.574	-0.067495					16	11	2	0	0	0	0.34378	1	462	462		3.9444	0	1	52757			5866	5830	2967	2967	8201	8201					-0.04305989007377775
DPSSIYLRI	9	Unmodified	_DPSSIYLRI_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2931518554688	2	532.292756	1062.57096	0.38005	0.0002023	0.63221	0.00033652	1.0123	0.00053882	532.2930319891689	61.774	0.72554	61.774	61.487	62.213	0					47	26	2	0	0	0	5.7257E-07	1	15181	15181		157.8	92.56	1	1611500			5867	403	2968	2968	8202	8202					0.042177256146942455
DPSSIYLRI	9	Unmodified	_DPSSIYLRI_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3084106445312	2	532.292756	1062.57096	0.13024	6.9326E-05	0.87311	0.00046475	1.0034	0.00053408	532.2931270692771	61.751	0.76573	61.742	61.425	62.191	-0.0085526					57	27	3	0	0	0	0.018449	1	15178	15178		66.457	30.33	1	1533700			5868	403	2968	2968	8203	8203					0.042177256146942455
DPSSIYLRI	9	Unmodified	_DPSSIYLRI_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	532.292756	1062.57096	-0.066235	-3.5257E-05	1.1067	0.00058911	1.0405	0.00055385	532.2932641773833	61.679	0.64052	61.776	61.479	62.12	0.096985	0.011665	0.00028798	NaN	157.8	42	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1666500			5869	403	2968	2968							0.042177256146942455
DPSSPYIHPVG	11	Unmodified	_DPSSPYIHPVG_					0	0	0		nc|ENSG00000185513|Q9Y468|L3MBTL1;ENSG00000185513|ENST00000418998|L3MBTL1;nc|ENSG00000185513|Q9Y468-3|L3MBTL1;nc|ENSG00000185513|Q9Y468-2|L3MBTL1;nc|ENSG00000185513|Q9Y468-4|L3MBTL1;nc|ENSG00000185513|Q9Y468-1|L3MBTL1	nc|ENSG00000185513|Q9Y468|L3MBTL1	nc|ENSG00000185513|Q9Y468|L3MBTL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.3125610351562	2	584.785296	1167.55604	0.18852	0.00011024	2.107	0.0012321	2.2955	0.0013424	584.7864145595012	42.466	0.29626	42.552	42.352	42.648	0.085197					16	10	2	0	0	0	0.3239	1	9238	9238		17.113	3.2068	1	162730			5870	7538	2969	2969	8204	8204					-0.021037662532989998
DPTDIPVV	8	Unmodified	_DPTDIPVV_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2265930175781	2	428.226551	854.438549	-0.086583	-3.7077E-05	0.49021	0.00020992	0.40363	0.00017284	428.226733943482	61.045	1.5702	61.142	60.579	62.149	0.096985					107	56	3	0	0	0	0.23581	2	14986	14937;14986		38.151	11.81	1	7360000			5871	3765	2970	2970	8205;8206	8206					0.005507008779090938
DPTDIPVV	8	Unmodified	_DPTDIPVV_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2266845703125	2	428.226551	854.438549	-0.017607	-7.5397E-06	0.40435	0.00017315	0.38675	0.00016562	428.22671741573026	61.026	1.5956	61.016	60.546	62.141	-0.0094566					117	58	3	0	0	0	0.23581	1	15009	15009		38.151	6.0342	1	7508300			5872	3765	2970	2970	8207	8207					0.005507008779090938
DPTEHIPEI	9	Unmodified	_DPTEHIPEI_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7682495117188	2	525.758746	1049.50294	0.87976	0.00046254	-0.42472	-0.0002233	0.45504	0.00023924	525.7584773608082	50.908	0.60285	50.908	50.569	51.172	0					51	21	3	0	0	0	0.051692	1	11774	11774		52.268	29.532	1	472340			5873	2776	2971	2971	8208	8208					-0.019831440359666885
DPTEHIPEI	9	Unmodified	_DPTEHIPEI_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2969360351562	2	525.758746	1049.50294	0.70903	0.00037278	-0.44834	-0.00023572	0.26069	0.00013706	525.7586057216638	50.9	0.694	50.947	50.577	51.271	0.046577					59	25	4	0	0	0	0.25066	1	11897	11897		7.2892	0	1	430320			5874	2776	2971	2971	8209	8209					-0.019831440359666885
DPTEHIPEI	9	Unmodified	_DPTEHIPEI_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7680053710938	2	525.758746	1049.50294	0.82455	0.00043351	-0.27498	-0.00014457	0.54957	0.00028894	525.7584335203038	50.984	0.65125	50.994	50.621	51.272	0.0095673					54	24	3	0	0	0	0.22188	1	11775	11775		20.454	20.454	1	394550			5875	2776	2971	2971	8210	8210					-0.019831440359666885
DPTEKELDFT	10	Unmodified	_DPTEKELDFT_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.2957153320312	2	597.779876	1193.5452	0.7773	0.00046465	-1.8047	-0.0010788	-1.0274	-0.00061416	597.7790057467805	78.615	0.41595	78.584	78.428	78.844	-0.030434					20	15	2	0	0	0	0.31629	1	20383	20383		10.074	0.6908	1	86294	+		5876	17219	2972	2972	8211	8211					-0.04383213418259402
DPTFGLFV	8	Unmodified	_DPTFGLFV_					0	0	0			REV__nc|ENSG00000112499|O15244-2|SLC22A2	REV__nc|ENSG00000112499|O15244-2|SLC22A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.60833740234375	2	448.231636	894.448719	0.35912	0.00016097	1.0881	0.00048774	1.4472	0.0006487	448.23177327750176	90.068	0.62244	90.068	89.703	90.326	0.0003891					111	51	3	0	0	0	0.31375	1	23807	23807		19.439	0	1	191080	+		5877	14779	2973	2973	8212	8212					-0.002726913968444933
DPTFWQSVAE	10	Unmodified	_DPTFWQSVAE_					0	0	0			REV__ENSG00000135632|ENST00000389501|SMYD5	REV__ENSG00000135632|ENST00000389501|SMYD5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.7952880859375	2	590.269478	1178.5244	0.086256	5.0914E-05	-2.6132	-0.0015425	-2.5269	-0.0014916	590.2680078929394	14.629	0.52149	14.524	14.273	14.795	-0.10466					28	17	2	0	0	0	0.31926	1	732	732		5.7319	2.1354	1	47469	+		5878	15752	2974	2974	8213	8213					-0.057717590072115854
DPTFWQSVAE	10	Unmodified	_DPTFWQSVAE_					0	0	0			REV__ENSG00000135632|ENST00000389501|SMYD5	REV__ENSG00000135632|ENST00000389501|SMYD5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	590.269478	1178.5244	0.087826	5.1841E-05	-2.4882	-0.0014687	-2.4003	-0.0014168	590.2681968076063	14.491	0.42174	14.491	14.307	14.729	0	-0.035972	-8.4399E-05	NaN	5.7319	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44606	+		5879	15752	2974	2974							-0.057717590072115854
DPTSNNNENNI	11	Unmodified	_DPTSNNNENNI_					0	0	0			REV__ENST00000523223.1_1_5:170679154-170679559:+|nuORF	REV__ENST00000523223.1_1_5:170679154-170679559:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.22735595703125	3	411.177701	1230.51127	0.074205	3.0511E-05	-0.36471	-0.00014996	-0.29051	-0.00011945	411.1775203143632	23.791	0.46721	23.718	23.53	23.997	-0.072559					25	15	2	0	0	0	0.33238	1	3630	3630		1.3296	0.21989	1	47057	+		5880	21925	2975	2975	8214	8214					-0.0947624185728273
DPVQRNLYR	9	Unmodified	_DPVQRNLYR_					0	0	0		ENSG00000198028|ENST00000301480|ZNF560	ENSG00000198028|ENST00000301480|ZNF560	ENSG00000198028|ENST00000301480|ZNF560	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8125610351562	2	580.812179	1159.60981	0.10069	5.8482E-05	-0.083513	-4.8505E-05	0.017178	9.9771E-06	580.8120079464519	17.203	0.6314	17.086	16.884	17.515	-0.11739					52	22	3	0	0	0	0.34809	1	1626	1626		1.6526	0.17072	1	223370			5881	8027	2976	2976	8215	8215					0.03638450969083351
DPWVRRRGW	9	Unmodified	_DPWVRRRGW_					0	0	0		ENST00000485672.2_1_19:42488766-42489464:-|nuORF	ENST00000485672.2_1_19:42488766-42489464:-|nuORF	ENST00000485672.2_1_19:42488766-42489464:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.2794494628906	3	409.887979	1226.64211	-0.059313	-2.4312E-05	-2.8368	-0.0011628	-2.8961	-0.0011871	409.88696344376666	19.162	0.31394	19.046	18.919	19.233	-0.11592					18	10	2	0	0	0	0.26169	1	2118	2118		2.2828	0	1	30726			5882	11093	2977	2977	8216	8216					0.03785283162756059
DPYALRSV	8	Unmodified	_DPYALRSV_					0	0	0		ENSG00000156873|ENST00000563588|PHKG2;nc|ENSG00000156873|P15735-2|PHKG2	ENSG00000156873|ENST00000563588|PHKG2	ENSG00000156873|ENST00000563588|PHKG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.2554626464844	2	460.745442	919.476331	-0.091049	-4.195E-05	0.41962	0.00019334	0.32857	0.00015139	460.7454736810301	41.462	0.45232	41.462	41.125	41.578	0					29	16	3	0	0	0	0.23175	1	8878	8878		38.615	8.7742	1	723190			5883	5262	2978	2978	8217	8217					0.013372118633924401
DPYALRSV	8	Unmodified	_DPYALRSV_					0	0	0		ENSG00000156873|ENST00000563588|PHKG2;nc|ENSG00000156873|P15735-2|PHKG2	ENSG00000156873|ENST00000563588|PHKG2	ENSG00000156873|ENST00000563588|PHKG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.255615234375	2	460.745442	919.476331	0.010687	4.924E-06	0.12911	5.9486E-05	0.1398	6.441E-05	460.74541077639697	41.158	0.42609	41.248	41.002	41.429	0.090252					35	15	3	0	0	0	0.16273	1	8853	8853		49.527	19.687	1	608070			5884	5262	2978	2978	8218	8218					0.013372118633924401
DPYALRSV	8	Unmodified	_DPYALRSV_					0	0	0		ENSG00000156873|ENST00000563588|PHKG2;nc|ENSG00000156873|P15735-2|PHKG2	ENSG00000156873|ENST00000563588|PHKG2	ENSG00000156873|ENST00000563588|PHKG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.25555419921875	2	460.745442	919.476331	0.013031	6.0041E-06	0.16115	7.4248E-05	0.17418	8.0252E-05	460.74543629801246	41.057	0.54057	41.154	40.881	41.422	0.096622					40	19	3	0	0	0	0.11863	2	8786	8786;8842		57.249	27.409	1	543850			5885	5262	2978	2978	8219;8220	8219					0.013372118633924401
DPYDKPNTI	9	Unmodified	_DPYDKPNTI_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.7501220703125	2	531.758746	1061.50294	0.49199	0.00026162	1.8528	0.00098524	2.3448	0.0012469	531.7599344281798	34.166	0.47638	34.166	34.023	34.5	0					22	16	2	0	0	0	0.048637	2	6699	6699;6752		53.404	24.322	1	218540			5886	4064	2979	2979	8221;8222	8221					-0.025351440359372646
DPYDKPNTI	9	Unmodified	_DPYDKPNTI_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.76025390625	2	531.758746	1061.50294	0.46417	0.00024683	1.8152	0.00096523	2.2793	0.0012121	531.7596762699447	34.086	0.47493	34.152	33.93	34.405	0.06636					36	16	3	0	0	0	0.01909	2	6692	6642;6692		65.474	39.206	1	218030			5887	4064	2979	2979	8223;8224	8224					-0.025351440359372646
DPYDKPNTI	9	Unmodified	_DPYDKPNTI_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.750244140625	2	531.758746	1061.50294	0.33926	0.0001804	2.0191	0.0010737	2.3584	0.0012541	531.7597002655324	34.072	0.495	34.138	33.939	34.434	0.066704					30	17	2	0	0	0	0.052436	1	6645	6645		74.2	42.083	1	177580			5888	4064	2979	2979	8225	8225					-0.025351440359372646
DPYEVSYRI	9	Unmodified	_DPYEVSYRI_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.281005859375	2	571.279846	1140.54514	0.32563	0.00018602	-0.16792	-9.5932E-05	0.1577	9.0092E-05	571.280682498337	53.014	2.1246	53.014	52.686	54.811	0					285	78	6	0	0	0	1.6536E-07	4	12478	12429;12478;12500;12528		173.69	111.11	1	145460000			5889	3719	2980	2980	8226;8227;8228;8229	8227					-0.019511686275791362
DPYEVSYRI	9	Unmodified	_DPYEVSYRI_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.805908203125	2	571.279846	1140.54514	0.59207	0.00033824	-0.22164	-0.00012662	0.37043	0.00021162	571.2798627646307	54.95	0.49117	54.95	54.811	55.302	0					22	17	2	0	0	0	0.22701	1	13048	13048		18.373	1.2602	1	448320			5890	3719	2980	2980	8230	8230					-0.019511686275791362
DPYEVSYRI	9	Unmodified	_DPYEVSYRI_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2796020507812	2	571.279846	1140.54514	0.63073	0.00036032	-0.40964	-0.00023402	0.22109	0.0001263	571.2805121408637	52.985	2.6395	53.041	52.717	55.356	0.056255					283	98	6	0	0	0	1.6536E-07	7	12412	12412;12459;12460;12504;12554;12751;12810		173.69	117.51	1	135790000			5891	3719	2980	2980	8231;8232;8233;8234;8235;8236;8237	8231					-0.019511686275791362
DPYEVSYRI	9	Unmodified	_DPYEVSYRI_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2481079101562	2	571.279846	1140.54514	0.64022	0.00036574	-0.47013	-0.00026858	0.17008	9.7165E-05	571.2795155196361	55.437	0.88335	55.508	55.164	56.048	0.070885					50	32	2	0	0	0	0.18733	1	13396	13396		35.612	17.477	1	278340			5892	3719	2980	2980	8238	8238					-0.019511686275791362
DPYEVSYRI	9	Unmodified	_DPYEVSYRI_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.7703857421875	2	571.279846	1140.54514	0.40297	0.00023021	-0.261	-0.0001491	0.14197	8.1107E-05	571.2797270652562	58.512	1.6168	58.603	57.871	59.488	0.091305					76	57	2	0	0	0	0.19208	1	14432	14432		27.223	12.385	1	161060			5893	3719	2980	2980	8239	8239					-0.019511686275791362
DPYEVSYRI	9	Unmodified	_DPYEVSYRI_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2813110351562	2	571.279846	1140.54514	0.32225	0.0001841	-0.041976	-2.398E-05	0.28028	0.00016012	571.2807315217138	53.212	2.2217	53.202	52.812	55.034	-0.0096054					276	81	6	0	0	0	1.6536E-07	6	12542	12465;12510;12542;12560;12607;12932		173.69	115.01	1	149670000			5894	3719	2980	2980	8240;8241;8242;8243;8244;8245	8242					-0.019511686275791362
DPYEVSYRI	9	Unmodified	_DPYEVSYRI_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	571.279846	1140.54514	0.45994	0.00026275	-1.0073	-0.00057545	-0.54737	-0.0003127	571.2794287914118	58.799	1.439	58.785	57.931	59.37	-0.014267	0.091073	-0.00051291	NaN	27.223	65	51	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199360			5895	3719	2980	2980							-0.019511686275791362
DPYFRPMVM	9	Unmodified	_DPYFRPMVM_					0	0	0			REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF	REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.2688598632812	2	578.269912	1154.52527	0.33492	0.00019367	-1.2173	-0.00070395	-0.88242	-0.00051027	578.2690209470558	53.026	0.74959	53.026	52.743	53.493	0					67	27	3	0	0	0	0.17787	1	12532	12532		26.884	0.61551	1	1966900	+		5896	18509	2981	2981	8246	8246					-0.045809591635133984
DPYFRPMVM	9	Unmodified	_DPYFRPMVM_					0	0	0			REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF	REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2692260742188	2	578.269912	1154.52527	0.60079	0.00034742	-1.4096	-0.0008151	-0.80876	-0.00046768	578.2688461223586	53.005	0.76236	53.061	52.772	53.535	0.056255					60	27	3	0	0	0	0.12846	1	12456	12456		34.102	5.0209	1	2003700	+		5897	18509	2981	2981	8247	8247					-0.045809591635133984
DPYGFLTTV	9	Unmodified	_DPYGFLTTV_					0	0	0		ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.75286865234375	2	506.752933	1011.49131	0.31973	0.00016203	-0.3652	-0.00018507	-0.045466	-2.304E-05	506.75268178059315	79.848	1.1023	79.848	79.467	80.569	0					117	41	4	0	0	0	0.0037552	3	20725	20675;20725;20773		96.285	51.878	1	3143500			5898	7768	2982	2982	8248;8249;8250	8249					-0.013973410592939217
DPYGFLTTV	9	Unmodified	_DPYGFLTTV_					0	0	0		ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7528381347656	2	506.752933	1011.49131	0.31757	0.00016093	-0.3718	-0.00018841	-0.054227	-2.748E-05	506.752683598933	79.764	1.0518	79.825	79.465	80.517	0.061409					112	39	4	0	0	0	0.0037552	4	20695	20647;20695;20739;20797		96.285	54.19	1	3498100			5899	7768	2982	2982	8251;8252;8253;8254	8252					-0.013973410592939217
DPYGFLTTV	9	Unmodified	_DPYGFLTTV_					0	0	0		ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7528381347656	2	506.752933	1011.49131	0.33684	0.0001707	-0.35391	-0.00017934	-0.017066	-8.6484E-06	506.7526890352673	79.85	1.1243	79.821	79.471	80.595	-0.028923					111	40	4	0	0	0	0.00094673	4	20719	20669;20719;20764;20817		123.45	75.105	1	3474000			5900	7768	2982	2982	8255;8256;8257;8258	8256					-0.013973410592939217
DPYGFLTTVI	10	Unmodified	_DPYGFLTTVI_					0	0	0		ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3055419921875	2	563.294965	1124.57538	0.25673	0.00014461	-0.040339	-2.2723E-05	0.21639	0.00012189	563.2941164978331	95.577	0.46873	95.655	95.483	95.952	0.077408					90	37	4	0	0	0	0.31039	1	25570	25570		18.146	2.2992	1	172840			5901	7768	2983	2983	8259	8259					0.018071900376071426
DPYGFLTTVI	10	Unmodified	_DPYGFLTTVI_					0	0	0		ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.3050537109375	2	563.294965	1124.57538	0.31789	0.00017907	-1.2795	-0.00072074	-0.96161	-0.00054167	563.2938055590844	95.797	0.45939	95.793	95.532	95.992	-0.0038147					73	42	2	0	0	0	0.18562	1	25603	25603		34.402	2.0962	1	199690			5902	7768	2983	2983	8260	8260					0.018071900376071426
DPYGFLTTVI	10	Unmodified	_DPYGFLTTVI_					0	0	0		ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	ENSG00000188725|ENST00000339020|SMIM15	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.294965	1124.57538	0.04778	2.6914E-05	-0.98409	-0.00055434	-0.93631	-0.00052742	563.2939699338043	95.75	0.47238	95.75	95.517	95.989	0	0.017261	4.6903E-05	NaN	34.402	86	47	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122340			5903	7768	2983	2983							0.018071900376071426
DPYIADLL	8	Unmodified	_DPYIADLL_					0	0	0		ENSG00000174799|ENST00000257287|CEP135;ENST00000515081.1_1_4:56820464-56832049:+|nuORF;nc|ENSG00000174799|Q66GS9-2|CEP135	ENSG00000174799|ENST00000257287|CEP135;nc|ENSG00000174799|Q66GS9-2|CEP135	nc|ENSG00000174799|Q66GS9-2|CEP135	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.293212890625	2	460.242201	918.469849	0.21849	0.00010056	-0.28893	-0.00013298	-0.070439	-3.2419E-05	460.2420002099374	82.733	0.68538	82.733	82.489	83.174	0					37	25	2	0	0	0	0.30503	1	21568	21568		16.942	0	1	258960			5904	6817;12846	2984	2984	8261	8261					0.007352739120165097
DPYIADLL	8	Unmodified	_DPYIADLL_					0	0	0		ENSG00000174799|ENST00000257287|CEP135;ENST00000515081.1_1_4:56820464-56832049:+|nuORF;nc|ENSG00000174799|Q66GS9-2|CEP135	ENSG00000174799|ENST00000257287|CEP135;nc|ENSG00000174799|Q66GS9-2|CEP135	nc|ENSG00000174799|Q66GS9-2|CEP135	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	460.242201	918.469849	0.30743	0.00014149	-0.68569	-0.00031559	-0.37826	-0.00017409	460.2418549971368	82.717	0.57796	82.697	82.475	83.053	-0.020584	-0.0042171	-0.00019395	NaN	16.942	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344590			5905	6817;12846	2984	2984							0.007352739120165097
DPYKESYTF	9	Unmodified	_DPYKESYTF_					0	0	0			REV__ENSG00000111832|ENST00000466444|RWDD1	REV__ENSG00000111832|ENST00000466444|RWDD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.2901611328125	2	575.258579	1148.50261	0.39984	0.00023001	0.0066778	3.8415E-06	0.40652	0.00023385	575.2584051594968	65.692	1.6411	65.781	65.216	66.857	0.088882					133	59	3	0	0	0	0.067563	1	16422	16422		66.457	7.7779	1	538940	+		5906	14739	2985	2985	8262	8262					-0.06570563755826697
DPYKHKVNI	9	Unmodified	_DPYKHKVNI_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.306396484375	2	557.306198	1112.59784	0.29114	0.00016226	-0.36365	-0.00020266	-0.072509	-4.041E-05	557.3059488859043	21.727	0.84742	21.727	21.431	22.278	0					58	30	3	0	0	0	0.038291	3	2908	2908;2957;3004		57.249	44.207	1	252140			5907	8126	2986	2986	8263;8264;8265	8263					0.04604834225892773
DPYKHKVNI	9	Unmodified	_DPYKHKVNI_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3060302734375	2	557.306198	1112.59784	0.37996	0.00021176	-0.38266	-0.00021326	-0.0026938	-1.5013E-06	557.3059394738948	21.823	0.78925	21.723	21.443	22.233	-0.10034					51	28	3	0	0	0	0.026579	2	2941	2941;2995		61.602	43.456	1	317330			5908	8126	2986	2986	8266;8267	8266					0.04604834225892773
DPYKHKVNI	9	Unmodified	_DPYKHKVNI_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3062133789062	2	557.306198	1112.59784	0.18813	0.00010484	-0.32982	-0.00018381	-0.14169	-7.8964E-05	557.3059206238121	21.783	0.8817	21.733	21.435	22.316	-0.049377					59	31	3	0	0	0	0.058995	3	2914	2914;2966;3011		49.554	36.512	1	287760			5909	8126	2986	2986	8268;8269;8270	8268					0.04604834225892773
DPYKPLDI	8	Unmodified	_DPYKPLDI_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7555236816406	2	480.755475	959.496398	0.2053	9.8701E-05	-0.15899	-7.6436E-05	0.046312	2.2265E-05	480.75552001812764	52.329	0.72004	52.329	52.023	52.743	0					38	25	2	0	0	0	0.034373	1	12275	12275		85.642	37.296	1	1494800			5910	1775	2987	2987	8271	8271					0.015029628033403242
DPYKPLDI	8	Unmodified	_DPYKPLDI_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	480.755475	959.496398	0.28	0.00013461	-0.34328	-0.00016503	-0.063283	-3.0424E-05	480.75543159071356	52.311	0.75864	52.362	52.036	52.794	0.050575	-0.017168	-0.00020761	NaN	85.642	43	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1359700			5911	1775	2987	2987							0.015029628033403242
DPYKPLDI	8	Unmodified	_DPYKPLDI_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	480.755475	959.496398	0.125	6.0093E-05	0.0036386	1.7493E-06	0.12864	6.1842E-05	480.755570171645	52.446	0.81367	52.445	52.115	52.929	-0.00080872	0.066454	0.00012595	NaN	85.642	42	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1433800			5912	1775	2987	2987							0.015029628033403242
DPYKVYRI	8	Unmodified	_DPYKVYRI_					0	0	0		ENST00000495137.5_1_6:394829-397293:+|nuORF;nc|ENSG00000137265|Q15306-2|IRF4;ENSG00000137265|ENST00000380956|IRF4	ENST00000495137.5_1_6:394829-397293:+|nuORF	ENST00000495137.5_1_6:394829-397293:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7578125	2	527.290017	1052.56548	0.13438	7.0858E-05	-0.36475	-0.00019233	-0.23037	-0.00012147	527.2900724842058	38.876	1.1906	38.876	38.239	39.43	0					94	42	5	0	0	0	0.28547	1	8154	8154		39.95	24.103	1	928430			5913	4038	2988	2988	8272	8272					0.04130046822888289
DPYKVYRI	8	Unmodified	_DPYKVYRI_					0	0	0		ENST00000495137.5_1_6:394829-397293:+|nuORF;nc|ENSG00000137265|Q15306-2|IRF4;ENSG00000137265|ENST00000380956|IRF4	ENST00000495137.5_1_6:394829-397293:+|nuORF	ENST00000495137.5_1_6:394829-397293:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7578735351562	2	527.290017	1052.56548	0.40031	0.00021108	-0.63477	-0.00033471	-0.23446	-0.00012363	527.2900395826113	38.78	1.259	38.873	38.211	39.47	0.09267					97	45	3	0	0	0	0.30795	1	8082	8082		30.637	14.789	1	1027200			5914	4038	2988	2988	8273	8273					0.04130046822888289
DPYKVYRI	8	Unmodified	_DPYKVYRI_					0	0	0		ENST00000495137.5_1_6:394829-397293:+|nuORF;nc|ENSG00000137265|Q15306-2|IRF4;ENSG00000137265|ENST00000380956|IRF4	ENST00000495137.5_1_6:394829-397293:+|nuORF	ENST00000495137.5_1_6:394829-397293:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7577514648438	2	527.290017	1052.56548	0.64019	0.00033757	-0.83631	-0.00044098	-0.19612	-0.00010341	527.2900449299306	38.783	1.5251	38.883	38.237	39.762	0.099407					112	54	3	0	0	0	0.29969	1	8114	8114		34.402	22.761	1	988500			5915	4038	2988	2988	8274	8274					0.04130046822888289
DPYLLPHI	8	Unmodified	_DPYLLPHI_					0	0	0		ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000580203.1_1_17:60689719-60689923:+|nuORF;ENST00000530992.1_1_17:32364642-32365872:-|nuORF;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.26611328125	2	484.26601	966.517468	0.4143	0.00020063	-0.24048	-0.00011646	0.17383	8.4178E-05	484.26590818485903	66.189	1.511	66.189	65.768	67.279	0					149	53	4	0	0	0	0.004968	2	16605	16605;16661		127.54	56.672	1	7792600			5916	4735;12746	2989	2989	8275;8276	8275					0.03286972902856178
DPYLLPHI	8	Unmodified	_DPYLLPHI_					0	0	0		ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000580203.1_1_17:60689719-60689923:+|nuORF;ENST00000530992.1_1_17:32364642-32365872:-|nuORF;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2660827636719	2	484.26601	966.517468	0.42119	0.00020397	-0.27636	-0.00013383	0.14483	7.0138E-05	484.26589668575355	66.066	1.6087	66.15	65.751	67.36	0.083832					164	57	5	0	0	0	0.004968	2	16543	16543;16586		127.54	56.672	1	7736800			5917	4735;12746	2989	2989	8277;8278	8277					0.03286972902856178
DPYLLPHI	8	Unmodified	_DPYLLPHI_					0	0	0		ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000580203.1_1_17:60689719-60689923:+|nuORF;ENST00000530992.1_1_17:32364642-32365872:-|nuORF;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.2661437988281	2	484.26601	966.517468	0.31715	0.00015359	-0.13658	-6.6141E-05	0.18057	8.7445E-05	484.26595401675684	66.208	1.4927	66.194	65.772	67.265	-0.013596					155	53	4	0	0	0	0.004968	2	16594	16594;16642		127.54	56.672	1	7511000			5918	4735;12746	2989	2989	8279;8280	8279					0.03286972902856178
DPYMMGRI	8	2 Oxidation (M)	_DPYM(Oxidation (M))M(Oxidation (M))GRI_		DPYM(1)M(1)GRI		DPYM(44)M(44)GRI	0	0	2		ENSG00000179918|ENST00000478753|SEPHS2;ENST00000443084.1_1_2:200524349-200524604:+|nuORF;nc|ENSG00000086475|P49903-2|SEPHS1;nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1	ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.72296142578125	2	507.722795	1013.43104	0.11521	5.8497E-05	0.51787	0.00026293	0.63308	0.00032143	507.7229931683027	31.339	0.46304	31.339	31.09	31.553	0					31	16	2	0	0	0	0.1951	1	5844	5844		43.858	28.011	1	279150			5919	7155	2990	2990	8281	8281		798;799			-0.07514097985665558
DPYPLLVV	8	Unmodified	_DPYPLLVV_					0	0	0		ENSG00000120137|ENST00000239231|PANK3;PANK3|p.D203Efs*3|1|0.37|ENSG00000120137|chr5:168566038-168566039|TG/-|frameshift_variant	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2628173828125	2	458.262936	914.51132	0.35818	0.00016414	-0.084348	-3.8654E-05	0.27384	0.00012549	458.2627655811387	83.601	0.75983	83.601	83.148	83.908	0					58	28	3	0	0	0	0.42758	2	21865	21865;21920		13.508	13.508	1	472370			5920	2929	2991	2991	8282;8283	8282					0.050644546713328964
DPYPLLVV	8	Unmodified	_DPYPLLVV_					0	0	0		ENSG00000120137|ENST00000239231|PANK3;PANK3|p.D203Efs*3|1|0.37|ENSG00000120137|chr5:168566038-168566039|TG/-|frameshift_variant	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2629089355469	2	458.262936	914.51132	0.36671	0.00016805	-0.22296	-0.00010217	0.14375	6.5877E-05	458.2627486950638	83.643	0.7096	83.626	83.187	83.896	-0.016823					56	30	2	0	0	0	0.42758	1	21852	21852		13.508	13.508	1	383910			5921	2929	2991	2991	8284	8284					0.050644546713328964
DPYRALDI	8	Unmodified	_DPYRALDI_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.75079345703125	2	481.750724	961.486896	0.24935	0.00012013	-0.13889	-6.6911E-05	0.11046	5.3215E-05	481.750702748662	52.494	1.2629	52.494	52.151	53.414	0					132	45	4	0	0	0	0.0015176	4	12335	12284;12335;12385;12491		137.42	76.066	1	13338000			5922	802	2992	2992	8285;8286;8287;8288	8286					0.0046119451779986775
DPYRALDI	8	Unmodified	_DPYRALDI_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7508850097656	2	481.750724	961.486896	0.3201	0.00015421	-0.13241	-6.3791E-05	0.18768	9.0416E-05	481.7507004401164	52.423	1.2574	52.474	52.116	53.373	0.050575					129	45	4	0	0	0	0.0015176	5	12299	12252;12299;12343;12396;12492		137.42	76.066	1	12132000			5923	802	2992	2992	8289;8290;8291;8292;8293	8290					0.0046119451779986775
DPYRALDI	8	Unmodified	_DPYRALDI_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7509460449219	2	481.750724	961.486896	0.18591	8.9561E-05	-0.059785	-2.8802E-05	0.12612	6.0759E-05	481.7507360734181	52.599	1.5075	52.598	52.246	53.753	-0.00080872					159	55	4	0	0	0	0.00055232	3	12351	12301;12351;12393		149.91	84.679	1	13484000			5924	802	2992	2992	8294;8295;8296	8295					0.0046119451779986775
DPYRVLGV	8	Unmodified	_DPYRVLGV_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.5831604003906	2	459.75581	917.497067	0.21107	9.7042E-05	-0.084067	-3.865E-05	0.12701	5.8391E-05	459.755739834307	53.476	0.87743	53.476	53.173	54.05	0					64	32	3	0	0	0	0.26342	1	12573	12573		39.95	27.418	1	967130			5925	2705	2993	2993	8297	8297					0.03501802243044949
DPYRVLGV	8	Unmodified	_DPYRVLGV_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.5830993652344	2	459.75581	917.497067	0.06595	3.0321E-05	0.23745	0.00010917	0.3034	0.00013949	459.7558222823666	53.437	0.76017	53.494	53.193	53.953	0.056259					57	28	3	0	0	0	0.29394	1	12559	12559		29.082	2.1979	1	970960			5926	2705	2993	2993	8298	8298					0.03501802243044949
DPYRVLGV	8	Unmodified	_DPYRVLGV_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	459.75581	917.497067	0.26344	0.00012112	-0.014591	-6.7085E-06	0.24885	0.00011441	459.7557620815385	53.618	0.70366	53.608	53.305	54.008	-0.0096054	0.082245	-4.7258E-05	NaN	39.95	53	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1010900			5927	2705	2993	2993							0.03501802243044949
DPYSDLDEG	9	Unmodified	_DPYSDLDEG_					0	0	0			REV__nc|ENSG00000122482|Q9H582-2|ZNF644	REV__nc|ENSG00000122482|Q9H582-2|ZNF644	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.792724609375	2	505.701094	1009.38764	0.42529	0.00021507	0.66636	0.00033698	1.0916	0.00055205	505.70136333935443	53.213	0.48042	53.213	53.062	53.542	0					30	17	2	0	0	0	0.25066	1	12545	12545		11.64	1.4569	1	201320	+		5928	15158	2994	2994	8299	8299					-0.11668292957608628
DPYSDLDEG	9	Unmodified	_DPYSDLDEG_					0	0	0			REV__nc|ENSG00000122482|Q9H582-2|ZNF644	REV__nc|ENSG00000122482|Q9H582-2|ZNF644	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.79278564453125	2	505.701094	1009.38764	0.39853	0.00020154	0.59426	0.00030052	0.99278	0.00050205	505.70134821212093	53.32	0.47057	53.311	53.192	53.662	-0.0096054					20	17	2	0	0	0	0.25066	1	12566	12566		11.64	1.4569	1	342520	+		5929	15158	2994	2994	8300	8300					-0.11668292957608628
DPYSFGRTTI	10	Unmodified	_DPYSFGRTTI_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.78564453125	2	578.785296	1155.55604	0.32125	0.00018594	0.1763	0.00010204	0.49755	0.00028797	578.7852642722988	52.638	0.4669	52.638	52.465	52.932	0					43	16	3	0	0	0	0.00014769	1	12376	12376		132.22	99.434	1	1045800			5930	7834	2995	2995	8301	8301					-0.01551766253282949
DPYSFGRTTI	10	Unmodified	_DPYSFGRTTI_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.78564453125	2	578.785296	1155.55604	0.46555	0.00026945	0.045207	2.6165E-05	0.51075	0.00029562	578.7852304669376	52.598	0.51938	52.649	52.441	52.96	0.050575					32	18	2	0	0	0	9.9886E-05	1	12362	12362		142.92	106.87	1	1379400			5931	7834	2995	2995	8302	8302					-0.01551766253282949
DPYSFGRTTI	10	Unmodified	_DPYSFGRTTI_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.7855834960938	2	578.785296	1155.55604	0.23784	0.00013766	0.3112	0.00018012	0.54903	0.00031777	578.7854527294295	52.79	0.54581	52.79	52.548	53.094	-0.00081253					48	19	3	0	0	0	0.0035277	1	12413	12413		121.93	85.886	1	1186100			5932	7834	2995	2995	8303	8303					-0.01551766253282949
DPYSGKLI	8	Unmodified	_DPYSGKLI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	446.7422790527344	2	446.742368	891.470183	0.37511	0.00016758	-0.22624	-0.00010107	0.14887	6.6507E-05	446.74214422414445	44.401	0.8458	44.401	44.115	44.961	0					69	30	3	0	0	0	0.0094041	4	9825	9825;9875;9882;9936		118.89	57.537	1	1958600			5933	12859	2996	2996	8304;8305;8306;8307	8304					0.020106936318711632
DPYSGKLI	8	Unmodified	_DPYSGKLI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	446.7423400878906	2	446.742368	891.470183	0.30095	0.00013445	-0.093689	-4.1855E-05	0.20726	9.2591E-05	446.7421623206093	44.216	0.74992	44.284	44.093	44.843	0.068573					63	27	3	0	0	0	0.0030528	3	9767	9767;9813;9825		131.27	60.134	1	1921200			5934	12859	2996	2996	8308;8309;8310	8308					0.020106936318711632
DPYSGKLI	8	Unmodified	_DPYSGKLI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.7422180175781	2	446.742368	891.470183	0.2593	0.00011584	-0.025177	-1.1248E-05	0.23413	0.00010459	446.74215461115864	44.179	0.92251	44.254	43.961	44.883	0.07505					78	33	4	0	0	0	0.016169	2	9743	9743;9799		107.19	54.919	1	1636800			5935	12859	2996	2996	8311;8312	8311					0.020106936318711632
DPYSVKRNV	9	Unmodified	_DPYSVKRNV_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2881469726562	2	539.288005	1076.56146	0.45553	0.00024566	-0.93981	-0.00050683	-0.48428	-0.00026117	539.2877784922915	24.463	0.40427	24.39	24.179	24.584	-0.072559					23	13	2	0	0	0	0.23749	1	3769	3769		20.415	11.821	1	121860			5936	1217	2997	2997	8313	8313					0.026239573292059504
DPYTGQQI	8	Unmodified	_DPYTGQQI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;ENSG00000261150|ENST00000615648|EPPK1	nc|ENSG00000178209|Q15149|PLEC;ENSG00000261150|ENST00000615648|EPPK1	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.2193298339844	2	461.219257	920.423961	-0.19593	-9.0366E-05	0.38739	0.00017867	0.19146	8.8305E-05	461.219318496641	42.593	0.79415	42.593	42.355	43.149	0					57	28	3	0	0	0	0.04227	2	9269	9269;9318		81.89	27.117	1	1185800			5937	12859;8656	2998	2998	8314;8315	8314					-0.03943371270224816
DPYTGQQI	8	Unmodified	_DPYTGQQI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;ENSG00000261150|ENST00000615648|EPPK1	nc|ENSG00000178209|Q15149|PLEC;ENSG00000261150|ENST00000615648|EPPK1	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.2190856933594	2	461.219257	920.423961	0.028172	1.2994E-05	0.19556	9.0198E-05	0.22374	0.00010319	461.2192135330809	42.365	0.77049	42.45	42.18	42.951	0.085197					61	27	3	0	0	0	0.30157	1	9225	9225		30.637	2.1497	1	1276200			5938	12859;8656	2998	2998	8316	8316					-0.03943371270224816
DPYTGQQI	8	Unmodified	_DPYTGQQI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;ENSG00000261150|ENST00000615648|EPPK1	nc|ENSG00000178209|Q15149|PLEC;ENSG00000261150|ENST00000615648|EPPK1	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.2192077636719	2	461.219257	920.423961	0.21607	9.9656E-05	0.043284	1.9963E-05	0.25935	0.00011962	461.2191220374752	42.262	0.75756	42.353	42.095	42.853	0.091362					56	26	3	0	0	0	0.13277	1	9178	9178		54.774	18.729	1	1297400			5939	12859;8656	2998	2998	8317	8317					-0.03943371270224816
DPYTGQQI	8	Unmodified	_DPYTGQQI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;ENSG00000261150|ENST00000615648|EPPK1	nc|ENSG00000178209|Q15149|PLEC;ENSG00000261150|ENST00000615648|EPPK1	nc|ENSG00000178209|Q15149|PLEC	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	461.219257	920.423961	0.028172	1.2994E-05	0.19556	9.0198E-05	0.22374	0.00010319	461.2192135330809	42.365	0.77049	42.45	42.18	42.951	0.085197	-0.015356	-5.7926E-05	NaN	81.89	61	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1276200			5940	12859;8656	2998	2998							-0.03943371270224816
DPYTGQSV	8	Unmodified	_DPYTGQSV_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.697998046875	2	433.698158	865.381762	0.015518	6.7301E-06	-0.12793	-5.5485E-05	-0.11242	-4.8755E-05	433.69799918542765	35.728	0.79083	35.728	35.466	36.256	0					54	28	3	0	0	0	0.063256	1	7183	7183		71.922	35.878	1	775490			5941	12859	2999	2999	8318	8318					-0.05631346678603677
DPYTGQSV	8	Unmodified	_DPYTGQSV_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.69793701171875	2	433.698158	865.381762	0.044273	1.9201E-05	-0.082254	-3.5673E-05	-0.037981	-1.6472E-05	433.69808794409704	35.623	0.73495	35.705	35.436	36.171	0.082359					44	26	3	0	0	0	0.088223	1	7146	7146		62.573	34.086	1	784770			5942	12859	2999	2999	8319	8319					-0.05631346678603677
DPYTGQSV	8	Unmodified	_DPYTGQSV_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.8728332519531	2	433.698158	865.381762	-0.22454	-9.7381E-05	0.11583	5.0235E-05	-0.10871	-4.7146E-05	433.69815061164707	35.572	0.66438	35.658	35.476	36.14	0.08625					36	23	2	0	0	0	0.29394	1	7188	7188		36.127	7.9538	1	800130			5943	12859	2999	2999	8320	8320					-0.05631346678603677
DQECKISLKLK	11	Unmodified	_DQECKISLKLK_					0	0	0		ENSG00000146530|ENST00000275358|VWDE	ENSG00000146530|ENST00000275358|VWDE	ENSG00000146530|ENST00000275358|VWDE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.57940673828125	3	435.579601	1303.71697	-0.24978	-0.0001088	-0.442	-0.00019253	-0.69178	-0.00030133	435.5794776715021	22.382	0.96478	22.337	22.069	23.033	-0.044867					73	33	4	0	0	0	0.3013	1	3112	3112		22.109	0.8675	1	447070			5944	4718	3000	3000	8321	8321					0.07726240068427614
DQEDDFPRRL	10	Unmodified	_DQEDDFPRRL_					0	0	0		ENSG00000104880|ENST00000668164|ARHGEF18	ENSG00000104880|ENST00000668164|ARHGEF18	ENSG00000104880|ENST00000668164|ARHGEF18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8879699707031	3	430.873953	1289.60003	0.38191	0.00016456	-4.4635	-0.0019232	-4.0816	-0.0017587	430.8717166558607	36.42	0.38673	36.506	36.371	36.757	0.08625					16	13	2	0	0	0	0.31969	1	7408	7408		1.5923	0.13716	1	76044			5945	1928	3001	3001	8322	8322					-0.03318781826965278
DQEHSCVPA	9	Unmodified	_DQEHSCVPA_					0	0	0			REV__ENST00000301463.8_1_12:53471021-53473172:-|nuORF	REV__ENST00000301463.8_1_12:53471021-53473172:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.213623046875	2	493.205824	984.397095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.72	1	79.691	79.191	80.191	-0.028931								0	0	0	0.23367	1	20670	20670		11.64	1.5664	1		+		5946	19824	3002	3002	8323	8323					-0.09572803153071163
DQFLNRRKR	9	Unmodified	_DQFLNRRKR_					0	0	0			REV__ENST00000254742.6_1_4:4247980-4248055:-|nuORF	REV__ENST00000254742.6_1_4:4247980-4248055:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2467956542969	3	411.570539	1231.68979	-0.14436	-5.9414E-05	-0.16856	-6.9374E-05	-0.31292	-0.00012879	411.5704034011686	24.737	0.55528	24.705	24.571	25.126	-0.031408					23	18	2	0	0	0	0.25992	1	3879	3879		4.5289	0.94181	1	65142	+		5947	19546	3003	3003	8324	8324					0.0832093736294155
DQIESDKK	8	Unmodified	_DQIESDKK_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7432861328125	2	481.743096	961.47164	0.31402	0.00015128	0.27369	0.00013185	0.58772	0.00028313	481.74305720399707	20.725	1.047	20.725	20.235	21.282	0					68	36	4	0	0	0	0.43127	1	2603	2603		12.241	1.4167	1	243130			5948	4941	3004	3004	8325	8325					-0.010637170700533716
DQIESDKK	8	Unmodified	_DQIESDKK_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7436218261719	2	481.743096	961.47164	0.5281	0.00025441	0.28852	0.00013899	0.81662	0.0003934	481.743098493784	20.987	0.94787	20.877	20.435	21.383	-0.11003					52	32	2	0	0	0	0.3812	1	2722	2722		21.537	3.402	1	316390			5949	4941	3004	3004	8326	8326					-0.010637170700533716
DQIIFYKLP	9	Unmodified	_DQIIFYKLP_					0	0	0			REV__nc|ENSG00000169344|P07911-2|UMOD	REV__nc|ENSG00000169344|P07911-2|UMOD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.303466796875	2	568.82115	1135.62775	0.36306	0.00020651	1.462	0.00083164	1.8251	0.0010381	568.8224253083671	59.133	1.5825	59.118	58.712	60.295	-0.014267					169	55	5	0	0	0	0.12642	1	14483	14483		34.402	2.0962	1	19364000	+		5950	17513	3005	3005	8327	8327					0.06535773171231085
DQIRIPEL	8	Unmodified	_DQIRIPEL_					0	0	0			REV__ENST00000581274.1_1_18:20303550-20366766:-|nuORF	REV__ENST00000581274.1_1_18:20303550-20366766:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2637939453125	2	492.279649	982.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.121	1	59.107	58.607	59.607	-0.014267								0	0	0	0.30279	1	14369	14369		28.487	5.3384	1		+		5951	22474	3006	3006	8328	8328					0.05277456443218398
DQPCGDTRRP	10	Unmodified	_DQPCGDTRRP_					0	0	0			REV__ENST00000400274.5_1_21:47976946-47980690:+|nuORF	REV__ENST00000400274.5_1_21:47976946-47980690:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2896118164062	2	572.761829	1143.5091	0.082363	4.7175E-05	-2.7056	-0.0015497	-2.6233	-0.0015025	572.7602164359434	33.189	0.44121	33.189	32.895	33.336	0					20	15	2	0	0	0	0.31926	1	6397	6397		5.7319	2.1354	1	124030	+		5952	20702	3007	3007	8329	8329					-0.05690949076074503
DQPCGDTRRP	10	Unmodified	_DQPCGDTRRP_					0	0	0			REV__ENST00000400274.5_1_21:47976946-47980690:+|nuORF	REV__ENST00000400274.5_1_21:47976946-47980690:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	572.761829	1143.5091	0.25822	0.0001479	-2.527	-0.0014474	-2.2688	-0.0012995	572.760045477653	33.03	0.30806	33.085	32.946	33.255	0.055309	-0.042092	-5.2627E-05	NaN	2.9952	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116840	+		5953	20702	3007	3007							-0.05690949076074503
DQPCGDTRRP	10	Unmodified	_DQPCGDTRRP_					0	0	0			REV__ENST00000400274.5_1_21:47976946-47980690:+|nuORF	REV__ENST00000400274.5_1_21:47976946-47980690:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	572.761829	1143.5091	0.17504	0.00010026	-1.8323	-0.0010495	-1.6573	-0.00094923	572.7605575794057	33.053	0.24725	33.108	32.956	33.203	0.054375	-0.01967	0.00074309	NaN	2.9952	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108740	+		5954	20702	3007	3007							-0.05690949076074503
DQQELIQQI	9	Unmodified	_DQQELIQQI_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2894897460938	2	557.790578	1113.5666	-0.033735	-1.8817E-05	-1.5394	-0.00085869	-1.5732	-0.0008775	557.790138164105	30.234	1.0512	30.261	29.923	30.975	0.027157					43	36	2	0	0	0	0.25779	1	5620	5620		6.2058	0	1	111720			5955	2758	3008	3008	8330	8330					0.014362164011572531
DQRKAIKA	8	Unmodified	_DQRKAIKA_					0	0	0		ENSG00000165959|ENST00000298912|CLMN	ENSG00000165959|ENST00000298912|CLMN	ENSG00000165959|ENST00000298912|CLMN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2685852050781	2	465.279983	928.545414	-0.0010701	-4.9791E-07	-1.7158	-0.00079831	-1.7168	-0.0007988	465.2792950923152	28.817	0.28848	28.817	28.606	28.894	0.0004673					11	9	2	0	0	0	0.43043	1	5089	5089		12.532	2.4576	1	68677			5956	6015	3009	3009	8331	8331					0.07828295882939074
DQRWIYTL	8	Unmodified	_DQRWIYTL_					0	0	0			REV__ENSG00000119915|ENST00000370005|ELOVL3	REV__ENSG00000119915|ENST00000370005|ELOVL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3536987304688	2	547.785099	1093.55564	0.3998	0.00021901	0.37127	0.00020338	0.77107	0.00042238	547.7851447487776	52.212	0.5807	52.212	51.885	52.465	0					40	20	3	0	0	0	0.34046	1	12169	12169		9.3474	7.2877	1	286640	+		5957	15064	3010	3010	8332	8332					0.012608588175226032
DQSKFIAY	8	Unmodified	_DQSKFIAY_					0	0	0			REV__ENSG00000173409|ENST00000310256|ARV1	REV__ENSG00000173409|ENST00000310256|ARV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2454833984375	2	486.245275	970.475997	0.6109	0.00029705	-0.42767	-0.00020795	0.18323	8.9096E-05	486.2450112206559	60.538	0.57985	60.635	60.369	60.949	0.096989					41	20	3	0	0	0	0.050494	1	14846	14846		77.984	5.0164	1	753590	+		5958	17781	3011	3011	8333	8333					-0.010422078564829462
DQSKFIAY	8	Unmodified	_DQSKFIAY_					0	0	0			REV__ENSG00000173409|ENST00000310256|ARV1	REV__ENSG00000173409|ENST00000310256|ARV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2451477050781	2	486.245275	970.475997	0.71682	0.00034855	-0.35405	-0.00017216	0.36277	0.0001764	486.24498010099563	60.645	0.51023	60.635	60.352	60.862	-0.0094566					45	18	3	0	0	0	0.050494	1	14872	14872		77.984	5.0164	1	938240	+		5959	17781	3011	3011	8334	8334					-0.010422078564829462
DQVKKRKK	8	Unmodified	_DQVKKRKK_					0	0	0		ENSG00000118507|ENST00000431975|AKAP7	ENSG00000118507|ENST00000431975|AKAP7	ENSG00000118507|ENST00000431975|AKAP7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7597045898438	2	515.330008	1028.64546	-0.13326	-6.8672E-05	-3.0065	-0.0015494	-3.1398	-0.001618	515.328360915297	13.776	0.16987	13.671	13.568	13.738	-0.10466					8	5	2	0	0	0	0.34419	1	503	503		1.8442	0.19162	1	14549			5960	2829	3012	3012	8335	8335					0.1322853321673847
DQVKMQIN	8	Unmodified	_DQVKMQIN_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2485656738281	2	488.250034	974.485516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.675	1	79.736	79.236	80.236	0.061417								0	0	0	0.36486	1	20661	20661		7.9102	1.187	1				5961	3156	3013	3013	8336	8336					-0.0027476284259364547
DQYKFLAV	8	Unmodified	_DQYKFLAV_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2644348144531	2	492.263468	982.512382	0.47497	0.00023381	0.51864	0.00025531	0.99361	0.00048912	492.26403891990543	58.444	1.9888	58.444	58.046	60.035	0					250	69	6	0	0	0	0.00098232	5	14156	14114;14156;14200;14246;14294		144.35	86.879	1	59675000			5962	7545	3014	3014	8337;8338;8339;8340;8341	8338					0.02042669040235978
DQYKFLAV	8	Unmodified	_DQYKFLAV_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2635192871094	2	492.263468	982.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.042	1	60.042	59.542	60.542	0								0	0	0	0.31724	1	14658	14658		26.268	9.1816	1				5963	7545	3014	3014	8342	8342					0.02042669040235978
DQYKFLAV	8	Unmodified	_DQYKFLAV_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2645568847656	2	492.263468	982.512382	0.40475	0.00019924	0.61575	0.00030311	1.0205	0.00050235	492.26408371366244	58.269	2.067	58.355	57.97	60.037	0.085621					253	73	6	0	0	0	0.00098232	5	14105	14060;14105;14152;14195;14338		144.35	86.879	1	61075000			5964	7545	3014	3014	8343;8344;8345;8346;8347	8344					0.02042669040235978
DQYKFLAV	8	Unmodified	_DQYKFLAV_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2638244628906	2	492.263468	982.512382	0.70768	0.00034837	0.2969	0.00014615	1.0046	0.00049452	492.26385980948567	58.486	2.5001	58.472	57.956	60.456	-0.014267					292	89	6	0	0	0	1.0464E-05	7	14132	14113;14132;14175;14215;14269;14520;14587		158.2	100.73	1	69565000			5965	7545	3014	3014	8348;8349;8350;8351;8352;8353;8354	8349					0.02042669040235978
DQYKFYSV	8	Unmodified	_DQYKFYSV_					0	0	0		ENST00000448842.1_1_2:204536900-204537104:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	ENST00000448842.1_1_2:204536900-204537104:-|nuORF	ENST00000448842.1_1_2:204536900-204537104:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7683715820312	2	525.250557	1048.48656	0.72216	0.00037931	-0.3716	-0.00019518	0.35056	0.00018413	525.2503056071636	50.273	0.57343	50.273	50.05	50.623	0					38	20	3	0	0	0	0.23175	1	11671	11671		38.615	16.868	1	451970			5966	10623	3015	3015	8355	8355					-0.03574225202055459
DQYKFYSV	8	Unmodified	_DQYKFYSV_					0	0	0		ENST00000448842.1_1_2:204536900-204537104:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	ENST00000448842.1_1_2:204536900-204537104:-|nuORF	ENST00000448842.1_1_2:204536900-204537104:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7684326171875	2	525.250557	1048.48656	1.0176	0.00053452	-0.67709	-0.00035564	0.34055	0.00017888	525.2502338606064	50.302	0.56831	50.347	49.981	50.549	0.044891					28	20	2	0	0	0	0.41989	1	11672	11672		16.149	4.5088	1	327380			5967	10623	3015	3015	8356	8356					-0.03574225202055459
DQYKFYSV	8	Unmodified	_DQYKFYSV_					0	0	0		ENST00000448842.1_1_2:204536900-204537104:-|nuORF;ENSG00000189043|ENST00000339600|NDUFA4	ENST00000448842.1_1_2:204536900-204537104:-|nuORF	ENST00000448842.1_1_2:204536900-204537104:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.768310546875	2	525.250557	1048.48656	1.0593	0.00055642	-0.91661	-0.00048145	0.14273	7.4968E-05	525.2500206991583	50.276	0.88461	50.297	49.802	50.686	0.020691					48	32	3	0	0	0	0.35098	1	11672	11672		24.991	8.0487	1	386760			5968	10623	3015	3015	8357	8357					-0.03574225202055459
DQYPYLKSV	9	Unmodified	_DQYPYLKSV_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7843627929688	2	556.784764	1111.55498	0.50482	0.00028108	0.069394	3.8638E-05	0.57421	0.00031971	556.7849065855218	50.291	1.759	50.291	49.38	51.139	0					187	64	4	0	0	0	0.003929	2	11577	11577;11716		94.909	45.354	1	4978900			5969	4787	3016	3016	8358;8359	8358					0.0036601937779323634
DQYPYLKSV	9	Unmodified	_DQYPYLKSV_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7843627929688	2	556.784764	1111.55498	0.77239	0.00043005	-0.17909	-9.9715E-05	0.5933	0.00033034	556.7847794322878	50.245	1.584	50.29	49.425	51.009	0.044891					193	58	4	0	0	0	0.0027197	2	11559	11559;11565		104.48	67.978	1	5114700			5970	4787	3016	3016	8360;8361	8360					0.0036601937779323634
DQYPYLKSV	9	Unmodified	_DQYPYLKSV_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7857055664062	2	556.784764	1111.55498	0.73669	0.00041018	-0.17082	-9.5107E-05	0.56588	0.00031507	556.7848048563953	50.358	1.8592	50.378	49.372	51.231	0.020691					211	69	4	0	0	0	0.0016481	1	11594	11594		114.5	58.994	1	4775800			5971	4787	3016	3016	8362	8362					0.0036601937779323634
DREQLYWQL	9	Unmodified	_DREQLYWQL_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.9202575683594	3	417.543655	1249.60914	0.36538	0.00015256	-1.0673	-0.00044563	-0.70188	-0.00029307	417.87758527259035	40.467	0.56858	40.56	40.284	40.852	0.09267					33	20	2	0	0	0	0.25066	1	8683	8683		7.609	4.0219	1	240020			5972	7225	3017	3017	8363	8363					-0.005683884706513709
DREQLYWQL	9	Unmodified	_DREQLYWQL_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.9204406738281	3	417.543655	1249.60914	0.27648	0.00011544	-1.0579	-0.00044173	-0.78145	-0.00032629	417.54329487026854	40.472	0.51994	40.571	40.26	40.78	0.099403					32	18	2	0	0	0	0.24311	1	8657	8657		7.609	3.2028	1	229740			5973	7225	3017	3017	8364	8364					-0.005683884706513709
DRFKNEKN	8	Unmodified	_DRFKNEKN_					0	0	0			REV__ENSG00000152518|ENST00000282388|ZFP36L2	REV__ENSG00000152518|ENST00000282388|ZFP36L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2587890625	2	525.76998	1049.52541	0.48413	0.00025454	-1.4348	-0.00075437	-0.95066	-0.00049983	525.7694059563526	17.339	0.26503	17.339	17.242	17.507	0					16	9	2	0	0	0	0.34419	1	1573	1573		1.8442	0.19162	1	31759	+		5974	16582	3018	3018	8365	8365					0.0026250015232562873
DRGEDEEEI	9	Unmodified	_DRGEDEEEI_					0	0	0		nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8265380859375	2	546.228007	1090.44146	0.5176	0.00028273	-1.4635	-0.00079942	-0.94594	-0.0005167	546.2267967997891	62.396	0.63391	62.396	62.084	62.718	0					56	23	4	0	0	0	0.25323	1	15411	15411		6.2058	0	1	665860			5975	1575	3019	3019	8366	8366					-0.10014120525897852
DRIDSVDWMA	10	Unmodified	_DRIDSVDWMA_					0	0	0			REV__ENSG00000164168|ENST00000296582|TMEM184C	REV__ENSG00000164168|ENST00000296582|TMEM184C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.2749633789062	2	604.274238	1206.53392	0.68084	0.00041141	1.0899	0.00065858	1.7707	0.00107	604.2744370440348	79.036	0.76961	79.036	78.725	79.495	0					47	31	2	0	0	0	0.36786	1	20581	20581		9.3831	1.2276	1	193460	+		5976	17130	3020	3020	8367	8367					-0.06108313993354386
DRITEKLVK	9	Unmodified	_DRITEKLVK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.814208984375	2	551.334956	1100.65536	0.59674	0.00032901	2.2725	0.0012529	2.8692	0.0015819	551.8378554036863	40.527	0.48504	40.619	40.394	40.879	0.09267					37	17	3	0	0	0	0.25622	1	8688	8688		3.9444	0	1	462930	+		5977	16705;23038	3021	3021	8368	8368					0.1090567643148006
DRKKMLEIL	9	Unmodified	_DRKKMLEIL_					0	0	0		ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.8410034179688	2	573.339184	1144.66381	0.23579	0.00013518	0.14754	8.4591E-05	0.38333	0.00021978	573.3392295234768	91.138	0.36865	91.138	91.029	91.397	0					41	26	2	0	0	0	0.33018	1	24181	24181		4.3292	0	1	308810			5978	2778	3022	3022	8369	8369					0.0972690707642414
DRKLNIFQ	8	Unmodified	_DRKLNIFQ_					0	0	0			REV__nc|ENSG00000118482|Q92576-2|PHF3	REV__nc|ENSG00000118482|Q92576-2|PHF3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3056030273438	2	517.293091	1032.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.244	1	60.34	59.84	60.84	0.095093								0	0	0	0.30279	1	14715	14715		28.487	3.813	1		+		5979	15012	3023	3023	8370	8370					0.05664565054394188
DRKRHKFIIW	10	Unmodified	_DRKRHKFIIW_					0	0	0			REV__ENST00000294997.10_1_1:207888693-207911758:+|nuORF	REV__ENST00000294997.10_1_1:207888693-207911758:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2646789550781	3	466.942084	1397.80442	0.30354	0.00014174	0.61252	0.00028601	0.91606	0.00042775	466.94234941299857	94.25	0.51147	94.248	94.03	94.541	-0.0020142					63	39	2	0	0	0	0.32167	1	25139	25139		0.62683	0.12087	1	224510	+		5980	19775	3024	3024	8371	8371					0.12143246844902933
DRLEKVPK	8	Unmodified	_DRLEKVPK_					0	0	0			REV__ENSG00000109111|ENST00000314616|SUPT6H	REV__ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.796142578125	2	492.795466	983.57638	0.5246	0.00025852	-0.58011	-0.00028588	-0.055512	-2.7356E-05	492.79525066420433	20.067	2.2041	20.011	19.337	21.542	-0.055693					119	78	3	0	0	0	0.44734	1	2317	2317		6.7232	0.51738	1	271650	+		5981	14629	3025	3025	8372	8372					0.08393449197171776
DRLKRWHSYY	10	Unmodified	_DRLKRWHSYY_					0	0	0			REV__ENST00000483767.5_1_1:880076-882054:-|nuORF	REV__ENST00000483767.5_1_1:880076-882054:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7917785644531	3	475.245832	1422.71567	0.32713	0.00015547	-1.5532	-0.00073817	-1.2261	-0.0005827	475.2449452606467	88.806	0.70841	88.895	88.433	89.142	0.089195					47	29	2	0	0	0	0.32162	1	23389	23389		0.77653	0.27058	1	116580	+		5982	18585	3026	3026	8373	8373					0.02121786814564075
DRLSQLCRH	9	Unmodified	_DRLSQLCRH_					0	0	0			REV__ENST00000272928.3_1_2:237490010-237490265:+|nuORF	REV__ENST00000272928.3_1_2:237490010-237490265:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8023681640625	2	564.290556	1126.56656	0.16889	9.5302E-05	-1.9251	-0.0010863	-1.7562	-0.00099103	564.2893864045222	16.46	0.45017	16.346	16.11	16.56	-0.11434					25	15	2	0	0	0	0.26188	1	1369	1369		1.6526	0.17072	1	37472	+		5983	19681	3027	3027	8374	8374					0.00833937920151584
DRLTARHLIL	10	Unmodified	_DRLTARHLIL_					0	0	0			REV__nc|ENSG00000211812|A0A0B4J265|TRAV26-2	REV__nc|ENSG00000211812|A0A0B4J265|TRAV26-2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.581298828125	3	403.247173	1206.71969	-0.098755	-3.9823E-05	-0.17486	-7.0514E-05	-0.27362	-0.00011034	403.24709883491494	33.262	0.92035	33.317	32.973	33.893	0.055309					104	32	5	0	0	0	0.32877	1	6500	6500		16.566	0.82726	1	1798600	+		5984	23184	3028	3028	8375	8375					0.12459876308275852
DRNRQYNMK	9	Unmodified	_DRNRQYNMK_					0	0	0			REV__ENST00000261497.8_1_17:20904411-20904570:-|nuORF	REV__ENST00000261497.8_1_17:20904411-20904570:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.5888366699219	3	408.868256	1223.58294	-0.18833	-7.7004E-05	2.8213	0.0011535	2.633	0.0010765	409.2040961181143	40.011	0.49237	40.011	39.669	40.161	0					23	17	2	0	0	0	0.259	1	8530	8530		5.2969	3.2109	1	115650	+		5985	19596	3029	3029	8376	8376					-0.01990980913774365
DRNTVVLLI	9	Unmodified	_DRNTVVLLI_					0	0	0			REV__nc|ENSG00000187079|P28347-2|TEAD1	REV__nc|ENSG00000187079|P28347-2|TEAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8004760742188	2	521.816399	1041.61824	0.28178	0.00014704	-0.32859	-0.00017146	-0.046811	-2.4427E-05	521.8162097201074	59.587	0.8697	59.587	59.107	59.977	0					47	30	2	0	0	0	0.20626	1	14498	14498		22.736	0	1	1058300	+		5986	18485	3030	3030	8377	8377					0.09910004885705348
DRNTVVLLI	9	Unmodified	_DRNTVVLLI_					0	0	0			REV__nc|ENSG00000187079|P28347-2|TEAD1	REV__nc|ENSG00000187079|P28347-2|TEAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.8004760742188	2	521.816399	1041.61824	0.30209	0.00015763	-0.69439	-0.00036234	-0.3923	-0.00020471	521.8160022350415	59.426	0.61275	59.519	59.213	59.826	0.093189					40	21	2	0	0	0	0.24467	2	14442	14400;14442		17.113	0	1	1135600	+		5987	18485	3030	3030	8378;8379	8379					0.09910004885705348
DRNTVVLLI	9	Unmodified	_DRNTVVLLI_					0	0	0			REV__nc|ENSG00000187079|P28347-2|TEAD1	REV__nc|ENSG00000187079|P28347-2|TEAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.800537109375	2	521.816399	1041.61824	0.55506	0.00028964	-0.89931	-0.00046928	-0.34425	-0.00017964	521.8158992865647	59.535	0.67551	59.523	59.174	59.85	-0.011486					38	23	2	0	0	0	0.20626	2	14481	14438;14481		22.736	0	1	1149600	+		5988	18485	3030	3030	8380;8381	8381					0.09910004885705348
DRNTVVLLI	9	Unmodified	_DRNTVVLLI_					0	0	0			REV__nc|ENSG00000187079|P28347-2|TEAD1	REV__nc|ENSG00000187079|P28347-2|TEAD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	521.816399	1041.61824	0.30209	0.00015763	-0.69439	-0.00036234	-0.3923	-0.00020471	521.8160022350415	59.426	0.61275	59.519	59.213	59.826	0.093189	-0.024114	1.0196E-05	NaN	22.736	40	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1135600	+		5989	18485	3030	3030							0.09910004885705348
DRNTVVLLI	9	Unmodified	_DRNTVVLLI_					0	0	0			REV__nc|ENSG00000187079|P28347-2|TEAD1	REV__nc|ENSG00000187079|P28347-2|TEAD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	521.816399	1041.61824	0.55506	0.00028964	-0.89931	-0.00046928	-0.34425	-0.00017964	521.8158992865647	59.535	0.67551	59.523	59.174	59.85	-0.011486	-0.019735	-0.00020367	NaN	22.736	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1149600	+		5990	18485	3030	3030							0.09910004885705348
DRPKNALTL	9	Unmodified	_DRPKNALTL_					0	0	0			REV__ENST00000368908.9_1_1:151138065-151138233:-|nuORF	REV__ENST00000368908.9_1_1:151138065-151138233:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7701416015625	2	514.298373	1026.58219	0.31695	0.00016301	3.3139	0.0017044	3.6309	0.0018674	514.298780809571	88.562	0.92853	88.651	88.213	89.142	0.089203					68	39	3	0	0	0	0.25988	1	23303	23303		3.9444	0.3479	1	164200	+		5991	20350	3031	3031	8382	8382					0.06996547708831713
DRRRSYEIK	9	Unmodified	_DRRRSYEIK_					0	0	0			REV__ENSG00000166225|ENST00000549921|FRS2	REV__ENSG00000166225|ENST00000549921|FRS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.8360595703125	2	611.836185	1221.65782	0.28233	0.00017274	-0.80442	-0.00049217	-0.52209	-0.00031943	611.8359415739714	24.621	0.37531	24.565	24.344	24.719	-0.055931					35	12	4	0	0	0	0.31479	1	3794	3794		3.2813	0	1	315730	+		5992	17302	3032	3032	8383	8383					0.055855248891248266
DRRRSYEIK	9	Unmodified	_DRRRSYEIK_					0	0	0			REV__ENSG00000166225|ENST00000549921|FRS2	REV__ENSG00000166225|ENST00000549921|FRS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.8353271484375	2	611.836185	1221.65782	0.063793	3.9031E-05	-0.64575	-0.00039509	-0.58195	-0.00035606	611.835902616457	24.599	0.33756	24.568	24.344	24.681	-0.03141					31	11	4	0	0	0	0.33321	1	3780	3780		3.2813	0	1	334980	+		5993	17302	3032	3032	8384	8384					0.055855248891248266
DRRTWKPC	8	Unmodified	_DRRTWKPC_					0	0	0		ENST00000508521.1_1_5:88244004-88261728:+|nuORF;ENST00000514092.5_1_5:88201053-88261728:+|nuORF	ENST00000508521.1_1_5:88244004-88261728:+|nuORF	ENST00000508521.1_1_5:88244004-88261728:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.8086547851562	2	531.269093	1060.52363	0.66035	0.00035082	-1.2678	-0.00067357	-0.6075	-0.00032275	531.2684235353462	20.029	0.35738	19.973	19.705	20.062	-0.055693					20	12	2	0	0	0	0.34272	1	2365	2365		7.9102	2.6795	1	33994			5994	11350	3033	3033	8385	8385					-0.00420832137274374
DRRVKLIMHK	10	Unmodified	_DRRVKLIMHK_					0	0	0			REV__ENSG00000002746|ENST00000395891|HECW1	REV__ENSG00000002746|ENST00000395891|HECW1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.5959167480469	3	432.595808	1294.76559	0.013945	6.0325E-06	0.22147	9.5809E-05	0.23542	0.00010184	432.5958252456744	41.806	1.509	41.896	41.738	43.247	0.090248					144	56	3	0	0	0	0.40085	1	9196	9196		3.3196	3.3196	1	2519600	+		5995	13320	3034	3034	8386	8386					0.13000198218833248
DRSPSRLDTF	10	Unmodified	_DRSPSRLDTF_					0	0	0		ENSG00000174799|ENST00000257287|CEP135	ENSG00000174799|ENST00000257287|CEP135	ENSG00000174799|ENST00000257287|CEP135	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.29638671875	2	597.299101	1192.58365	0.71849	0.00042915	-4.0717	-0.002432	-3.3532	-0.0020029	597.2950178802582	78.672	0.39097	78.73	78.528	78.919	0.058159					31	14	4	0	0	0	0.3641	1	20353	20353		10.074	0	1	110880			5996	6817	3035	3035	8387	8387					-0.004938629930620664
DRTISPAPAP	10	Unmodified	_DRTISPAPAP_					0	0	0			REV__ENST00000420383.5_1_X:153176228-153178737:-|nuORF	REV__ENST00000420383.5_1_X:153176228-153178737:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2939453125	2	512.774731	1023.53491	-0.013504	-6.9247E-06	1.6994	0.00087141	1.6859	0.00086449	513.2770912923206	14.715	0.22649	14.61	14.516	14.742	-0.10466					11	7	2	0	0	0	0.32033	1	804	804		3.5965	1.2938	1	38604	+		5997	20611	3036	3036	8388	8388					0.024082684378413433
DRTLSGSSSL	10	Unmodified	_DRTLSGSSSL_					0	0	0			REV__ENST00000523291.5_1_5:172347404-172347488:+|nuORF	REV__ENST00000523291.5_1_5:172347404-172347488:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2274475097656	2	511.759278	1021.504	0.179	9.1606E-05	-0.35878	-0.00018361	-0.17977	-9.2001E-05	511.7590044522463	18.346	0.55191	18.346	18.158	18.71	0					43	18	3	0	0	0	0.26905	1	1959	1959		31.268	15.119	1	272060	+		5998	21927	3037	3037	8389	8389					-0.005889296670375188
DRTLSGSSSL	10	Unmodified	_DRTLSGSSSL_					0	0	0			REV__ENST00000523291.5_1_5:172347404-172347488:+|nuORF	REV__ENST00000523291.5_1_5:172347404-172347488:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2271423339844	2	511.759278	1021.504	0.074559	3.8156E-05	-0.14132	-7.232E-05	-0.066757	-3.4164E-05	511.75897024442367	18.504	0.73906	18.386	18.151	18.89	-0.11739					54	25	3	0	0	0	0.25821	1	1967	1967		28.495	2.4971	1	243710	+		5999	21927	3037	3037	8390	8390					-0.005889296670375188
DRTSDLNSL	9	Unmodified	_DRTSDLNSL_					0	0	0		ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2271423339844	2	510.751453	1019.48835	0.085132	4.3481E-05	0.71983	0.00036765	0.80496	0.00041113	510.7518892596854	18.838	0.64437	18.721	18.531	19.175	-0.11739					32	22	2	0	0	0	0.24289	1	2058	2058		18.146	0	1	60866			6000	6778	3038	3038	8391	8391					-0.020612161840972476
DRTSDLNSL	9	Unmodified	_DRTSDLNSL_					0	0	0		ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2268981933594	2	510.751453	1019.48835	-0.07009	-3.5798E-05	0.54525	0.00027849	0.47516	0.00024269	510.7518581645561	18.808	0.56804	18.75	18.509	19.077	-0.058174					32	19	2	0	0	0	0.24289	1	2055	2055		18.146	0	1	62842			6001	6778	3038	3038	8392	8392					-0.020612161840972476
DRTSDLNSL	9	Unmodified	_DRTSDLNSL_					0	0	0		ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	510.751453	1019.48835	0.14126	7.2146E-05	0.71784	0.00036664	0.85909	0.00043878	510.75192005101417	18.732	0.41685	18.732	18.535	18.952	0	-0.0027114	5.6163E-05	NaN	18.146	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56966			6002	6778	3038	3038							-0.020612161840972476
DRTSLKPCNYF	11	Unmodified	_DRTSLKPCNYF_					0	0	0		nc|ENSG00000165694|Q6ZUT3-2|FRMD7;ENSG00000165694|ENST00000298542|FRMD7	nc|ENSG00000165694|Q6ZUT3-2|FRMD7	nc|ENSG00000165694|Q6ZUT3-2|FRMD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.55291748046875	3	448.551933	1342.63397	0.4243	0.00019032	1.5061	0.00067556	1.9304	0.00086588	448.5526343961989	29.39	0.55659	29.39	29.193	29.75	0					43	19	3	0	0	0	0.46554	1	5293	5293		2.6312	0.54523	1	201990			6003	5993	3039	3039	8393	8393					-0.023640766595462992
DRVDQTWN	8	Unmodified	_DRVDQTWN_					0	0	0		nc|ENSG00000100330|Q13615-2|MTMR3	nc|ENSG00000100330|Q13615-2|MTMR3	nc|ENSG00000100330|Q13615-2|MTMR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7589721679688	2	517.238513	1032.46247	-0.0046423	-2.4012E-06	0.2094	0.00010831	0.20475	0.00010591	517.2389326237842	25.56	0.47013	25.529	25.294	25.764	-0.031408					22	16	2	0	0	0	0.34198	1	4020	4020		10.824	1.4408	1	62685			6004	12613	3040	3040	8394	8394					-0.0524606563569705
DRVLPRQLT	9	Unmodified	_DRVLPRQLT_					0	0	0			REV__nc|ENSG00000197324|Q7Z4F1-2|LRP10	REV__nc|ENSG00000197324|Q7Z4F1-2|LRP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3251953125	2	549.324922	1096.63529	0.18935	0.00010401	-0.89521	-0.00049176	-0.70586	-0.00038775	549.3254250049704	25.638	0.51984	25.582	25.365	25.885	-0.055931					35	17	3	0	0	0	0.3208	1	4114	4114		5.7319	0	1	212910	+		6005	18728	3041	3041	8395	8395					0.09083925491495393
DRVRLCLKK	9	Unmodified	_DRVRLCLKK_					0	0	0		AluSg7_dup5861|chr12:118139033-118139331:+|1.43288222391881|0.0433328598824706|5.05|541.0|4|1|sense;AluSx1_dup104249|chr19:8368023-8368306:-|1.1970543423837865|0.3377140729029854|1.83|529.0|4|1|sense	AluSg7_dup5861|chr12:118139033-118139331:+|1.43288222391881|0.0433328598824706|5.05|541.0|4|1|sense	AluSg7_dup5861|chr12:118139033-118139331:+|1.43288222391881|0.0433328598824706|5.05|541.0|4|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.3165893554688	2	565.844968	1129.67538	-0.092272	-5.2211E-05	-1.2878	-0.00072868	-1.38	-0.00078089	565.8438729496473	12.395	0.19448	12.395	12.303	12.498	0					9	5	2	0	0	0	0.26145	1	134	134		2.0598	0.40713	1	24574			6006	32	3042	3042	8396	8396					0.11573148890443008
DRYPSLNPG	9	Unmodified	_DRYPSLNPG_					0	0	0		ENST00000549206.5_1_12:93964246-93966472:+|nuORF	ENST00000549206.5_1_12:93964246-93966472:+|nuORF	ENST00000549206.5_1_12:93964246-93966472:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7118835449219	2	509.751256	1017.48796	0.50488	0.00025736	0.39401	0.00020085	0.89889	0.00045821	509.7513400686031	29.189	0.676	29.189	28.845	29.521	0					32	24	2	0	0	0	0.25938	1	5285	5285		4.3292	0.38484	1	127400			6007	11783	3043	3043	8397	8397					-0.020085911132923684
DRYPSLNPG	9	Unmodified	_DRYPSLNPG_					0	0	0		ENST00000549206.5_1_12:93964246-93966472:+|nuORF	ENST00000549206.5_1_12:93964246-93966472:+|nuORF	ENST00000549206.5_1_12:93964246-93966472:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	509.751256	1017.48796	0.28864	0.00014713	0.28991	0.00014778	0.57855	0.00029492	509.75142600952955	29.094	0.76485	29.107	28.858	29.622	0.012266	-0.041132	-6.15E-05	NaN	4.3292	34	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97768			6008	11783	3043	3043							-0.020085911132923684
DSASLAGLHAL	11	Unmodified	_DSASLAGLHAL_					0	0	0		nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2843017578125	2	527.780013	1053.54547	0.59579	0.00031445	2.6386	0.0013926	3.2343	0.001707	527.7823169886905	89.534	0.97321	89.534	88.965	89.938	0					77	59	2	0	0	0	0.32736	1	23687	23687		12.241	1.4411	1	142880			6009	8517	3044	3044	8398	8398					0.02084251092287559
DSASVHDMDY	10	Unmodified	_DSASVHDMDY_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;ENST00000476019.1_1_10:104119080-104120840:+|nuORF	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7999267578125	2	570.219128	1138.4237	0.34123	0.00019458	-3.4541	-0.0019696	-3.1129	-0.001775	570.2168109754044	75.747	0.328	75.799	75.508	75.836	0.052574					12	11	2	0	0	0	0.31889	1	19440	19440		6.2058	1.4498	1	110750			6010	2153	3045	3045	8399	8399					-0.13997159052382813
DSASVHDMDY	10	Unmodified	_DSASVHDMDY_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1;ENST00000476019.1_1_10:104119080-104120840:+|nuORF	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.772216796875	2	570.219128	1138.4237	0.30515	0.000174	-1.3455	-0.00076725	-1.0404	-0.00059325	570.2174423111265	75.745	0.30688	75.714	75.496	75.803	-0.031487					15	10	2	0	0	0	0.32033	1	19463	19463		3.5965	1.019	1	110280			6011	2153	3045	3045	8400	8400					-0.13997159052382813
DSDDGSDGSSG	11	Unmodified	_DSDDGSDGSSG_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2690124511719	2	499.662697	997.310842	0.48751	0.00024359	0.036932	1.8454E-05	0.52444	0.00026204	499.6628614929331	21.141	0.37146	21.141	20.883	21.254	0					16	12	2	0	0	0	0.33352	1	2674	2674		0	0	1	20937	+		6012	13719	3046	3046	8401	8401					-0.18792136244724134
DSDEYDDDDSA	11	Unmodified	_DSDEYDDDDSA_					0	0	0		ENST00000577324.1_1_17:30677304-30687987:+|nuORF;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207	ENST00000577324.1_1_17:30677304-30687987:+|nuORF	ENST00000577324.1_1_17:30677304-30687987:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.6968383789062	2	623.696934	1245.37932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.266	1	96.262	95.762	96.762	-0.0038147								0	0	0	0.3823	1	25740	25740		0	0	1				6013	417	3047	3047	8402	8402					-0.23355936455550363
DSDKIIYSHF	10	Unmodified	_DSDKIIYSHF_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENSG00000156052|ENST00000286548|GNAQ	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.89971923828125	3	408.868027	1223.58225	0.017762	7.2625E-06	-0.033575	-1.3728E-05	-0.015813	-6.4654E-06	408.8679844230208	51.507	1.0739	51.507	51.222	52.296	0					128	39	5	0	0	0	0.31538	1	12176	12176		12.873	12.873	1	6967600			6014	1319	3048	3048	8403	8403					-0.02059497081813788
DSDKIIYSHF	10	Unmodified	_DSDKIIYSHF_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENSG00000156052|ENST00000286548|GNAQ	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.8997497558594	3	408.868027	1223.58225	0.01288	5.2661E-06	0.053333	2.1806E-05	0.066213	2.7072E-05	408.86802211807066	51.633	1.1539	51.643	51.297	52.451	0.0095634					123	42	4	0	0	0	0.31651	1	12211	12211		11.518	0.61892	1	7734600			6015	1319	3048	3048	8404	8404					-0.02059497081813788
DSDSDKDSEVK	11	Unmodified	_DSDSDKDSEVK_					0	0	0		nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.2046203613281	3	408.845728	1223.51536	0.065804	2.6904E-05	-1.6368	-0.0006692	-1.571	-0.0006423	408.8449292208279	37.429	0.48468	37.522	37.331	37.816	0.093014					23	17	2	0	0	0	0.3325	1	7776	7776		0.32927	0	1	201060			6016	7979	3049	3049	8405	8405					-0.08746197154232505
DSEAHHFCF	9	Unmodified	_DSEAHHFCF_					0	0	0			REV__ENST00000503370.5_1_4:123814341-123838767:-|nuORF	REV__ENST00000503370.5_1_4:123814341-123838767:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.3164672851562	2	546.713816	1091.41308	0.39972	0.00021853	0.45183	0.00024702	0.85156	0.00046556	546.7139784434254	64.925	0.79178	64.914	64.606	65.398	-0.011337					89	28	5	0	0	0	0.25879	1	16213	16213		4.756	4.756	1	2376700	+		6017	17606	3050	3050	8406	8406					-0.1289709691616281
DSEDMSYLR	9	Unmodified	_DSEDMSYLR_					0	0	0		ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.817138671875	2	558.237321	1114.46009	0.22383	0.00012495	2.6298	0.0014681	2.8536	0.001593	558.7401996101722	19.376	0.13888	19.26	19.145	19.284	-0.11592					6	4	2	0	0	0	0.24311	1	2216	2216		11.64	0.52583	1	17383			6018	1490	3051	3051	8407	8407					-0.09256282155683948
DSEHQTVR	8	Unmodified	_DSEHQTVR_					0	0	0			REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7850036621094	2	486.230687	970.446822	-0.020831	-1.0129E-05	0.79363	0.00038589	0.7728	0.00037576	486.2311821095648	14.668	0.22715	14.564	14.454	14.681	-0.10466					10	7	2	0	0	0	0.34367	1	832	832		4.3292	0.73274	1	29575	+		6019	16351	3052	3052	8408	8408					-0.03958352152767475
DSESKSSSKE	10	Unmodified	_DSESKSSSKE_					0	0	0		ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8522338867188	2	542.243657	1082.47276	0.14646	7.9415E-05	1.5014	0.00081414	1.6479	0.00089356	542.2445503430743	13.647	0.50492	13.647	13.457	13.962	0					31	17	2	0	0	0	0.31926	1	580	580		5.7319	0	1	480270			6020	3472	3053	3053	8409	8409					-0.0651754749178508
DSEWIPVSF	9	Unmodified	_DSEWIPVSF_					0	0	0		ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2567138671875	2	540.25584	1078.49713	0.53596	0.00028956	1.0268	0.00055473	1.5628	0.00084429	540.2562795748371	79.558	0.83591	79.558	79.261	80.097	0					67	31	3	0	0	0	0.25314	1	20660	20660		15.847	3.3156	1	634590			6021	4218	3054	3054	8410	8410					-0.03898242547620612
DSEWIPVSF	9	Unmodified	_DSEWIPVSF_					0	0	0		ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2565307617188	2	540.25584	1078.49713	0.5378	0.00029055	0.58504	0.00031607	1.1228	0.00060662	540.2561664986821	79.521	1.0406	79.582	79.273	80.314	0.061417					65	40	2	0	0	0	0.21303	1	20585	20585		21.747	3.6003	1	869010			6022	4218	3054	3054	8411	8411					-0.03898242547620612
DSFCPLAVHWK	11	Unmodified	_DSFCPLAVHWK_					0	0	0			REV__ENST00000355621.7_1_7:129471154-129471307:-|nuORF	REV__ENST00000355621.7_1_7:129471154-129471307:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.882080078125	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.63	1	112.62	112.12	113.12	-0.015625								0	0	0	0.38186	1	29294	29294		0.50596	0.23694	1		+		6023	20191	3055	3055	8412	8412					-0.01606853963062349
DSFCVVCLTQE	11	Unmodified	_DSFCVVCLTQE_					0	0	0			REV__ENST00000515051.1_1_5:175956111-175956726:-|nuORF	REV__ENST00000515051.1_1_5:175956111-175956726:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.5593566894531	3	415.18263	1242.52606	-0.36375	-0.00015102	2.4866	0.0010324	2.1229	0.00088137	415.18465636947707	13.39	0.54195	13.39	13.118	13.66	0					35	18	3	0	0	0	0.33324	1	480	480		0.40827	0	1	48023	+		6024	16328	3056	3056	8413	8413					-0.08550209305121825
DSFFPARSV	9	Unmodified	_DSFFPARSV_					0	0	0		ENST00000442275.1_1_13:46733808-46756346:-|nuORF	ENST00000442275.1_1_13:46733808-46756346:-|nuORF	ENST00000442275.1_1_13:46733808-46756346:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8088989257812	2	513.256174	1024.49779	0.092847	4.7655E-05	3.0055	0.0015426	3.0984	0.0015903	513.2574320436867	42.669	0.41143	42.754	42.539	42.951	0.085201					20	14	2	0	0	0	0.25527	1	9326	9326		5.2969	1.3525	1	150780			6025	10562	3057	3057	8414	8414					-0.013474031079113047
DSFIMSVTI	9	Oxidation (M)	_DSFIM(Oxidation (M))SVTI_		DSFIM(1)SVTI		DSFIM(85)SVTI	0	0	1		nc|ENSG00000168944|Q8N960-3|CEP120;nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120	nc|ENSG00000168944|Q8N960-3|CEP120	nc|ENSG00000168944|Q8N960-3|CEP120	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7520141601562	2	514.752075	1027.4896	0.26716	0.00013752	-0.16358	-8.4204E-05	0.10358	5.3319E-05	514.7517574794236	74.925	0.59128	74.978	74.732	75.323	0.052361					43	21	3	0	0	0	0.006189	1	19224	19224		85.272	55.047	1	379410			6026	6315	3058	3058	8415	8415		743			-0.02304718139544093
DSFLFANIV	9	Unmodified	_DSFLFANIV_					0	0	0		ENST00000471702.2_2_3:132339980-132400782:-|nuORF;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-3|ACAD11;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.268310546875	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.763	1	93.763	93.263	94.263	0								0	0	0	0.22933	1	24985	24985		13.042	0.80181	1				6027	8519	3059	3059	8416	8416					0.011666516946434058
DSFLGQTSI	9	Unmodified	_DSFLGQTSI_					0	0	0		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.802734375	2	484.24019	966.465826	-0.043936	-2.1275E-05	0.32248	0.00015616	0.27854	0.00013488	484.24027981612096	65.053	0.65029	65.053	64.781	65.431	0					47	23	3	0	0	0	0.00092088	1	16215	16215		121.53	69.904	1	689200			6028	2138	3060	3060	8417	8417					-0.018748155817092993
DSFLGQTSI	9	Unmodified	_DSFLGQTSI_					0	0	0		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.30322265625	2	484.24019	966.465826	0.075095	3.6364E-05	0.25374	0.00012287	0.32883	0.00015923	484.24020020361485	64.93	0.63969	65.019	64.794	65.434	0.088882					50	23	3	0	0	0	0.00013946	1	16164	16164		136.39	82.559	1	689990			6029	2138	3060	3060	8418	8418					-0.018748155817092993
DSFLGQTSI	9	Unmodified	_DSFLGQTSI_					0	0	0		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.8028259277344	2	484.24019	966.465826	-0.021188	-1.026E-05	0.50225	0.00024321	0.48106	0.00023295	484.2402822859322	65.053	0.72777	65.042	64.75	65.478	-0.01133					50	26	3	0	0	0	0.00052839	1	16205	16205		110.55	66.78	1	724170			6030	2138	3060	3060	8419	8419					-0.018748155817092993
DSFLHLAII	9	Unmodified	_DSFLHLAII_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA;ENST00000555629.1_1_14:35872865-35873850:-|nuORF;ENST00000557100.5_1_14:35871861-35873850:-|nuORF;ENST00000557459.1_1_14:35872311-35873850:-|nuORF	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7921752929688	2	514.792392	1027.57023	0.34976	0.00018006	0.013996	7.2052E-06	0.36376	0.00018726	514.7922296760337	81.975	0.69008	81.975	81.72	82.41	0					52	25	3	0	0	0	0.072844	1	21357	21357		44.407	21.671	1	640370			6031	1644	3061	3061	8420	8420					0.057549309656678815
DSFLHLAII	9	Unmodified	_DSFLHLAII_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA;ENST00000555629.1_1_14:35872865-35873850:-|nuORF;ENST00000557100.5_1_14:35871861-35873850:-|nuORF;ENST00000557459.1_1_14:35872311-35873850:-|nuORF	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7921752929688	2	514.792392	1027.57023	0.07354	3.7858E-05	0.17849	9.1884E-05	0.25203	0.00012974	514.7923340690185	81.892	0.56111	81.961	81.65	82.211	0.068993					50	22	3	0	0	0	0.079066	1	21311	21311		42.095	18.946	1	796080			6032	1644	3061	3061	8421	8421					0.057549309656678815
DSFLHLAII	9	Unmodified	_DSFLHLAII_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA;ENST00000555629.1_1_14:35872865-35873850:-|nuORF;ENST00000557100.5_1_14:35871861-35873850:-|nuORF;ENST00000557459.1_1_14:35872311-35873850:-|nuORF	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.79248046875	2	514.792392	1027.57023	0.24845	0.0001279	0.12013	6.1844E-05	0.36858	0.00018974	514.7922788505873	81.985	0.55602	81.961	81.743	82.299	-0.02404					46	21	3	0	0	0	0.072844	1	21347	21347		44.407	14.182	1	692170			6033	1644	3061	3061	8422	8422					0.057549309656678815
DSGKPRHL	8	Unmodified	_DSGKPRHL_					0	0	0			REV__ENST00000476328.1_1_5:125885615-125885732:-|nuORF	REV__ENST00000476328.1_1_5:125885615-125885732:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.24176025390625	2	455.248683	908.482814	-0.14352	-6.5339E-05	1.1779	0.00053623	1.0344	0.00047089	455.24927303591255	15.252	0.6809	15.188	14.955	15.636	-0.064414					35	22	3	0	0	0	0.4354	1	922	922		10.824	0	1	114020	+		6034	21421	3062	3062	8423	8423					0.02491149814761684
DSHAYSHRWK	10	Unmodified	_DSHAYSHRWK_					0	0	0		ENSG00000120594|ENST00000377252|PLXDC2;nc|ENSG00000120594|Q6UX71-2|PLXDC2	ENSG00000120594|ENST00000377252|PLXDC2	ENSG00000120594|ENST00000377252|PLXDC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.92572021484375	3	429.539016	1285.59522	-0.17674	-7.5918E-05	-0.74542	-0.00032019	-0.92216	-0.0003961	429.53852322342175	25.017	0.81044	24.961	24.376	25.186	-0.055931					66	28	3	0	0	0	0.32095	1	3826	3826		3.0723	1.7426	1	183390			6035	2952	3063	3063	8424	8424					-0.03615621179073969
DSICNLVHK	9	Unmodified	_DSICNLVHK_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2493896484375	2	514.763309	1027.51206	0.24005	0.00012357	-0.054686	-2.815E-05	0.18536	9.5416E-05	514.7633401197594	26.816	1.0639	26.816	26.41	27.474	0					56	36	2	0	0	0	0.25202	1	4646	4646		10.824	1.4765	1	149340			6036	6248	3064	3064	8425	8425					-0.0005907395127451309
DSIVEWFKA	9	Unmodified	_DSIVEWFKA_					0	0	0			REV__ENST00000554927.1_1_16:89989809-89999206:+|nuORF	REV__ENST00000554927.1_1_16:89989809-89999206:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.26220703125	2	547.779482	1093.54441	0.59081	0.00032363	3.0972	0.0016966	3.688	0.0020202	547.7808679364953	37.74	0.46279	37.83	37.609	38.072	0.090881					27	16	2	0	0	0	0.2322	1	7863	7863		14.838	1.7958	1	142980	+		6037	14421	3065	3065	8426	8426					0.0013803672338781325
DSIVEWFKA	9	Unmodified	_DSIVEWFKA_					0	0	0			REV__ENST00000554927.1_1_16:89989809-89999206:+|nuORF	REV__ENST00000554927.1_1_16:89989809-89999206:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	547.779482	1093.54441	0.58348	0.00031962	2.8658	0.0015698	3.4493	0.0018895	547.7811340173814	37.87	0.50429	37.87	37.587	38.092	0	0.03106	4.3609E-05	NaN	14.838	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93710	+		6038	14421	3065	3065							0.0013803672338781325
DSIVEWFKA	9	Unmodified	_DSIVEWFKA_					0	0	0			REV__ENST00000554927.1_1_16:89989809-89999206:+|nuORF	REV__ENST00000554927.1_1_16:89989809-89999206:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	547.779482	1093.54441	0.48989	0.00026835	2.5843	0.0014156	3.0742	0.001684	547.7808993028983	37.718	0.4841	37.816	37.552	38.037	0.097527	-0.022838	-0.00026479	NaN	14.838	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97111	+		6039	14421	3065	3065							0.0013803672338781325
DSIYFQPGSR	10	Unmodified	_DSIYFQPGSR_					0	0	0		nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2	nc|ENSG00000150893|Q5SZK8-2|FREM2	nc|ENSG00000150893|Q5SZK8-2|FREM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.2832641601562	2	585.28292	1168.55129	0.030355	1.7766E-05	-0.40372	-0.00023629	-0.37336	-0.00021852	585.2831121435252	14.753	0.52719	14.687	14.455	14.982	-0.066053					61	18	4	0	0	0	0.40106	1	789	789		3.2813	0.28607	1	325950			6040	4927	3066	3066	8427	8427					-0.026246503960464906
DSKVLLSPIRS	11	Unmodified	_DSKVLLSPIRS_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.8593139648438	2	607.858795	1213.70304	0.1322	8.036E-05	0.67151	0.00040818	0.80371	0.00048854	607.8592376731456	28.833	0.52109	28.834	28.606	29.127	0.0004673					34	18	3	0	0	0	0.39244	1	5070	5070		10.8	0	1	287390			6041	551	3067	3067	8428	8428					0.10473330631657518
DSLITPHV	8	Unmodified	_DSLITPHV_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2397155761719	2	441.239993	880.465432	0.24176	0.00010667	-0.84303	-0.00037198	-0.60128	-0.00026531	441.2394739430802	46.75	0.62172	46.75	46.402	47.024	0					45	21	3	0	0	0	0.082568	1	10591	10591		63.563	29.376	1	728190			6042	5064;484;7523	3068	3068	8429	8429					0.020418094890942484
DSLITPHV	8	Unmodified	_DSLITPHV_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2398681640625	2	441.239993	880.465432	0.29537	0.00013033	-0.49221	-0.00021718	-0.19685	-8.6857E-05	441.23958442958127	46.644	0.59676	46.697	46.417	47.014	0.052574					43	21	3	0	0	0	0.033363	1	10551	10551		86.121	54.004	1	749340			6043	5064;484;7523	3068	3068	8430	8430					0.020418094890942484
DSLITPHV	8	Unmodified	_DSLITPHV_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2396545410156	2	441.239993	880.465432	0.18428	8.1314E-05	-0.54841	-0.00024198	-0.36412	-0.00016067	441.23955772256267	46.615	0.56672	46.67	46.44	47.006	0.054375					40	19	3	0	0	0	0.033363	1	10530	10530		86.121	45.673	1	896360			6044	5064;484;7523	3068	3068	8431	8431					0.020418094890942484
DSLPDEFFVR	10	Unmodified	_DSLPDEFFVR_					0	0	0		ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.798583984375	2	612.798403	1223.58225	0.21111	0.00012937	0.22335	0.00013687	0.43446	0.00026624	612.7984800355601	51.618	1.0215	51.627	51.321	52.343	0.0095673					108	37	4	0	0	0	0.2811	1	12108	12108		22.736	22.736	1	3943800			6045	8160	3069	3069	8432	8432					-0.02059497081813788
DSLRDGEQKF	10	Unmodified	_DSLRDGEQKF_					0	0	0			REV__nc|ENSG00000107099|Q8NF50-4|DOCK8	REV__nc|ENSG00000107099|Q8NF50-4|DOCK8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.779052734375	2	597.791109	1193.56767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.677	1	49.722	49.222	50.222	0.044891								0	0	0	0.34897	1	11462	11462		15.248	4.4246	1		+		6046	14543	3070	3070	8433	8433					-0.021375692299670845
DSLRVLTV	8	Unmodified	_DSLRVLTV_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7689208984375	2	451.768917	901.523281	0.2126	9.6047E-05	-0.10688	-4.8285E-05	0.10572	4.7762E-05	451.76871680641915	52.31	0.65414	52.36	52.086	52.74	0.050571					40	23	2	0	0	0	0.16257	1	12311	12311		49.554	7.7147	1	549720			6047	5711	3071	3071	8434	8434					0.06858071414512779
DSLRVLTV	8	Unmodified	_DSLRVLTV_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	451.768917	901.523281	0.19417	8.772E-05	-0.14038	-6.3421E-05	0.053787	2.4299E-05	451.768713843451	52.364	0.83238	52.364	52.074	52.906	0	-0.00318	1.3297E-05	NaN	49.554	39	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	846370			6048	5711	3071	3071							0.06858071414512779
DSLRVLTV	8	Unmodified	_DSLRVLTV_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	451.768917	901.523281	0.038983	1.7611E-05	-0.22348	-0.00010096	-0.18449	-8.3348E-05	451.76870686661226	52.378	0.52159	52.377	52.141	52.663	-0.00080872	0.0098672	-6.178E-05	NaN	49.554	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501450			6049	5711	3071	3071							0.06858071414512779
DSLVILTI	8	Unmodified	_DSLVILTI_					0	0	0		nc|ENSG00000134291|Q9BVX2-2|TMEM106C;ENST00000547136.1_1_12:48359585-48360048:+|nuORF;ENST00000551305.5_1_12:48359585-48359975:+|nuORF;ENSG00000134291|ENST00000429772|TMEM106C	nc|ENSG00000134291|Q9BVX2-2|TMEM106C	nc|ENSG00000134291|Q9BVX2-2|TMEM106C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2572326660156	2	437.268219	872.521884	0.093995	4.1101E-05	-0.31824	-0.00013916	-0.22425	-9.8057E-05	437.2679072763903	86.818	0.57176	86.905	86.682	87.254	0.08709					43	23	2	0	0	0	0.057992	2	22883	22833;22883		74.423	16.951	1	599770			6050	12705	3072	3072	8435;8436	8436					0.08052437325773099
DSLVILTI	8	Unmodified	_DSLVILTI_					0	0	0		nc|ENSG00000134291|Q9BVX2-2|TMEM106C;ENST00000547136.1_1_12:48359585-48360048:+|nuORF;ENST00000551305.5_1_12:48359585-48359975:+|nuORF;ENSG00000134291|ENST00000429772|TMEM106C	nc|ENSG00000134291|Q9BVX2-2|TMEM106C	nc|ENSG00000134291|Q9BVX2-2|TMEM106C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.257080078125	2	437.268219	872.521884	0.1577	6.8956E-05	-0.41254	-0.00018039	-0.25484	-0.00011143	437.2678872031646	86.947	0.6064	86.941	86.698	87.304	-0.0056229					44	24	2	0	0	0	0.017942	1	22873	22873		104.8	19.442	1	692080			6051	12705	3072	3072	8437	8437					0.08052437325773099
DSNWSFAF	8	Unmodified	_DSNWSFAF_					0	0	0			REV__nc|ENSG00000135766|Q9GZT9-3|EGLN1	REV__nc|ENSG00000135766|Q9GZT9-3|EGLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7908020019531	2	487.20615	972.397747	0.29029	0.00014143	-2.4746	-0.0012056	-2.1843	-0.0010642	487.2049944449489	72.88	0.4103	72.934	72.681	73.091	0.053841					18	14	2	0	0	0	0.34185	1	18607	18607		5.7604	0	1	77016	+		6052	22998	3073	3073	8438	8438					-0.0895564044171806
DSPLHHIP	8	Unmodified	_DSPLHHIP_					0	0	0			REV__ENST00000263228.3_1_9:33886897-33886936:+|nuORF	REV__ENST00000263228.3_1_9:33886897-33886936:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.27740478515625	2	458.237784	914.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.579	1	12.511	12.011	13.011	-0.067935								0	0	0	0.37595	1	168	168		2.8892	0.31174	1		+		6053	19615	3074	3074	8439	8439					0.00036345066178000707
DSPSFWRLQ	9	Unmodified	_DSPSFWRLQ_					0	0	0			REV__chr4:68932759-68933345|263|36.32|0.35|6.71|-|2|TE_info:L1MA6,L1MA6_dup1286,L1,LINE,donor,+,68933345,68933593|UGT2A3,None|2	REV__chr4:68932759-68933345|263|36.32|0.35|6.71|-|2|TE_info:L1MA6,L1MA6_dup1286,L1,LINE,donor,+,68933345,68933593|UGT2A3,None|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.8450317382812	2	568.28018	1134.54581	0.12695	7.2144E-05	1.0505	0.00059696	1.1774	0.0006691	568.2807366807243	33.879	0.55593	33.946	33.77	34.326	0.066704					26	19	2	0	0	0	0.1939	1	6632	6632		30.637	6.616	1	205960	+		6054	13196	3075	3075	8440	8440					-0.0160832918786582
DSQDDDND	8	Unmodified	_DSQDDDND_					0	0	0			REV__ENST00000502249.6_1_4:119401524-119435218:+|nuORF	REV__ENST00000502249.6_1_4:119401524-119435218:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.1465148925781	2	462.146683	922.278813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.754	1	41.851	41.351	42.351	0.096626								0	0	0	0.37664	1	9022	9022		2.5775	0	1		+		6055	16195	3076	3076	8441	8441					-0.18543503927901384
DSQILPKI	8	Unmodified	_DSQILPKI_					0	0	0		ENST00000456481.1_1_7:137407104-137407545:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6	ENST00000456481.1_1_7:137407104-137407545:+|nuORF	ENST00000456481.1_1_7:137407104-137407545:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.27130126953125	2	457.271293	912.528032	0.15978	7.3064E-05	0.1169	5.3457E-05	0.27669	0.00012652	457.2712450697874	52.633	0.93387	52.633	52.267	53.201	0					87	33	4	0	0	0	0.0011578	2	12358	12358;12404		142.08	49.588	1	3963800			6056	1340	3077	3077	8442;8443	8442					0.06826955557278325
DSQILPKI	8	Unmodified	_DSQILPKI_					0	0	0		ENST00000456481.1_1_7:137407104-137407545:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6	ENST00000456481.1_1_7:137407104-137407545:+|nuORF	ENST00000456481.1_1_7:137407104-137407545:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2713623046875	2	457.271293	912.528032	0.27781	0.00012703	0.016151	7.3855E-06	0.29396	0.00013442	457.2712097014704	52.561	0.98701	52.612	52.254	53.241	0.050575					95	35	4	0	0	0	0.0098283	1	12360	12360		118.07	36.178	1	4130500			6057	1340	3077	3077	8444	8444					0.06826955557278325
DSQILPKI	8	Unmodified	_DSQILPKI_					0	0	0		ENST00000456481.1_1_7:137407104-137407545:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6	ENST00000456481.1_1_7:137407104-137407545:+|nuORF	ENST00000456481.1_1_7:137407104-137407545:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.27130126953125	2	457.271293	912.528032	0.079357	3.6288E-05	0.21531	9.8453E-05	0.29466	0.00013474	457.27127876889097	52.646	0.95737	52.646	52.194	53.151	-0.00081253					96	34	3	0	0	0	0.0038204	2	12372	12372;12420		129.77	40.818	1	4201800			6058	1340	3077	3077	8445;8446	8445					0.06826955557278325
DSRDGSGDAP	10	Unmodified	_DSRDGSGDAP_					0	0	0		ENST00000504861.2_1_8:93728183-93798243:-|nuORF	ENST00000504861.2_1_8:93728183-93798243:-|nuORF	ENST00000504861.2_1_8:93728183-93798243:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2742004394531	2	488.70196	975.389367	0.056251	2.749E-05	-1.2919	-0.00063137	-1.2357	-0.00060388	488.7009172664036	31.207	0.29973	31.25	30.968	31.268	0.042364					15	10	2	0	0	0	0.31642	1	5793	5793		10.8	4.4454	1	73958			6059	11304	3078	3078	8447	8447					-0.0993123914898888
DSRITHQI	8	Unmodified	_DSRITHQI_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.2591247558594	2	485.259248	968.503943	0.24839	0.00012053	0.1853	8.9916E-05	0.43368	0.00021045	485.2591556103944	22.11	1.3472	22.01	21.043	22.39	-0.10034					97	48	3	0	0	0	0.37071	1	3069	3069		22.736	3.4793	1	286410			6060	1519	3079	3079	8448	8448					0.018431151236200094
DSRLHTPMY	9	Unmodified	_DSRLHTPMY_					0	0	0		ENSG00000213215|ENST00000641412|OR2F1;ENSG00000255223|ENST00000528616|OR5M11;nc|ENSG00000227152|P0C7T2|OR2T7;ENSG00000177275|ENST00000318244|OR2AJ1;ENSG00000169488|ENST00000305051|OR4K15;ENSG00000196240|ENST00000641925|OR2T2;ENSG00000177151|ENST00000641268|OR2T35;ENSG00000278889|ENST00000341959|OR2S2;ENSG00000187701|ENST00000460972|OR2T27;ENSG00000221910|ENST00000408955|OR2F2;ENSG00000188558|ENST00000641804|OR2G6;ENSG00000279301|ENST00000641193|OR2T11;ENSG00000181733|ENST00000641125|OR2Z1;ENSG00000197403|ENST00000641846|OR6N1;nc|ENSG00000203581|Q96R84|OR1F2P;ENSG00000221933|ENST00000641663|OR2A25;ENSG00000221970|ENST00000641044|OR2A1;ENSG00000212807|ENST00000641810|OR2A42;ENSG00000221858|ENST00000641592|OR2A12;ENSG00000178358|ENST00000317834|OR2D3;ENSG00000179055|ENST00000641530|OR13D1;nc|ENSG00000179055|Q8NGV5|OR13D1;ENSG00000221836|ENST00000641693|OR2A5;nc|ENSG00000168126|Q8NHA6|OR2W6P	ENSG00000213215|ENST00000641412|OR2F1;ENSG00000179055|ENST00000641530|OR13D1;ENSG00000221836|ENST00000641693|OR2A5;nc|ENSG00000168126|Q8NHA6|OR2W6P	ENSG00000213215|ENST00000641412|OR2F1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.779052734375	2	560.266216	1118.51788	0.24846	0.0001392	3.352	0.001878	3.6004	0.0020172	560.7676468131756	76.447	0.44479	76.447	76.367	76.812	0					19	15	2	0	0	0	0.23784	1	19791	19791		19.257	0	1	69602			6061	8337;7100;8422;12828	3080	3080	8449	8449					-0.036639754395991986
DSRSQLIP	8	Unmodified	_DSRSQLIP_					0	0	0		nc|ENSG00000205744|Q8IV53-2|DENND1C;ENSG00000205744|ENST00000381480|DENND1C	nc|ENSG00000205744|Q8IV53-2|DENND1C	nc|ENSG00000205744|Q8IV53-2|DENND1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.8692626953125	2	458.248349	914.482145	0.40322	0.00018477	-0.3151	-0.00014439	0.088117	4.038E-05	458.24828863122065	20.743	0.54277	20.633	20.407	20.95	-0.11003					30	18	3	0	0	0	0.34313	1	2697	2697		6.7232	0.99131	1	59425			6062	8301	3081	3081	8450	8450					0.021483103750597365
DSRSQLIP	8	Unmodified	_DSRSQLIP_					0	0	0		nc|ENSG00000205744|Q8IV53-2|DENND1C;ENSG00000205744|ENST00000381480|DENND1C	nc|ENSG00000205744|Q8IV53-2|DENND1C	nc|ENSG00000205744|Q8IV53-2|DENND1C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	458.248349	914.482145	0.42452	0.00019454	-0.28899	-0.00013243	0.13553	6.2106E-05	458.2482272106636	20.63	0.59253	20.577	20.355	20.947	-0.052912	-0.0052206	-7.6331E-05	NaN	6.7232	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56628			6063	8301	3081	3081							0.021483103750597365
DSRSRRSL	8	Unmodified	_DSRSRRSL_					0	0	0			REV__ENSG00000100629|ENST00000555265|CEP128	REV__ENSG00000100629|ENST00000555265|CEP128	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.78253173828125	2	488.767771	975.52099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.393	1	33.393	32.893	33.893	0								0	0	0	0.29147	1	6472	6472		30.225	0	1		+		6064	14218	3082	3082	8451	8451					0.03225035729440151
DSRSRSLR	8	Unmodified	_DSRSRSLR_					0	0	0			REV__ENSG00000107140|ENST00000336395|TESK1	REV__ENSG00000107140|ENST00000336395|TESK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7823791503906	2	488.767771	975.52099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.032	1	33.087	32.587	33.587	0.055309								0	0	0	0.34229	1	6362	6362		18.135	0	1		+		6065	14544	3083	3083	8452	8452					0.032250357294287824
DSRTIHIQ	8	Unmodified	_DSRTIHIQ_					0	0	0		USH2A|p.T2648Yfs*13|1|0.13|ENSG00000042781|chr1:215888708-215888709|-/G|frameshift_variant;USH2A|p.F2200Gfs*16|1|0.03|ENSG00000042781|chr1:215998947-215998948|-/CTCTCTTCCC|frameshift_variant;USH2A|p.D2872Rfs*17|1|0.23|ENSG00000042781|chr1:215877825-215877826|-/T|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	USH2A|p.T2648Yfs*13|1|0.13|ENSG00000042781|chr1:215888708-215888709|-/G|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2590637207031	2	485.259248	968.503943	0.18066	8.7669E-05	0.34864	0.00016918	0.52931	0.00025685	485.25914962560194	22.068	1.8048	22.018	21.008	22.813	-0.049377					114	63	3	0	0	0	0.32937	1	3036	3036		22.736	0	1	309080			6066	615;23409	3084	3084	8453	8453					0.018431151236200094
DSSIGLLKMF	10	Unmodified	_DSSIGLLKMF_					0	0	0			REV__ENSG00000170231|ENST00000402432|FABP6	REV__ENSG00000170231|ENST00000402432|FABP6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7969360351562	2	555.796817	1109.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.59	1	113.59	113.09	114.09	0								0	0	0	0.37664	1	29501	29501		3.5965	0.8613	1		+		6067	17564	3085	3085	8454	8454					0.028675365398157737
DSSIGLLKMF	10	Unmodified	_DSSIGLLKMF_					0	0	0			REV__ENSG00000170231|ENST00000402432|FABP6	REV__ENSG00000170231|ENST00000402432|FABP6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7965698242188	2	555.796817	1109.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.63	1	113.64	113.14	114.14	0.014824								0	0	0	0.37664	1	29561	29561		3.5965	0.60125	1		+		6068	17564	3085	3085	8455	8455					0.028675365398157737
DSSIGLLKMF	10	Unmodified	_DSSIGLLKMF_					0	0	0			REV__ENSG00000170231|ENST00000402432|FABP6	REV__ENSG00000170231|ENST00000402432|FABP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7965698242188	2	555.796817	1109.57908	0.1994	0.00011083	-1.4066	-0.00078176	-1.2072	-0.00067093	555.7967230002969	113.6	0.068245	113.61	113.58	113.65	0.014824					11	7	2	0	0	0	0.32033	1	29561	29561		3.5965	1.019	1	20018	+		6069	17564	3085	3085	8456	8456					0.028675365398157737
DSTFNVFVGK	10	Unmodified	_DSTFNVFVGK_					0	0	0		ENST00000494374.5_1_7:32997059-33028356:+|nuORF;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9	ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENST00000494374.5_1_7:32997059-33028356:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.282470703125	2	557.282389	1112.55022	0.84015	0.0004682	-1.2147	-0.00067691	-0.37451	-0.00020871	557.2817265228085	56.273	0.74931	56.273	56.074	56.823	0					37	27	3	0	0	0	0.02128	1	13472	13472		70.332	49.878	1	1173300			6070	3056	3086	3086	8457	8457					-0.001548647649542545
DSTFNVFVGK	10	Unmodified	_DSTFNVFVGK_					0	0	0		ENST00000494374.5_1_7:32997059-33028356:+|nuORF;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9	ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENST00000494374.5_1_7:32997059-33028356:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7398071289062	2	557.282389	1112.55022	0.89094	0.00049651	-0.58696	-0.0003271	0.30398	0.0001694	557.2821391933774	56.243	0.48514	56.224	56.107	56.592	-0.019081					27	17	2	0	0	0	0.28108	1	13565	13565		28.495	15.963	1	1268800			6071	3056	3086	3086	8458	8458					-0.001548647649542545
DSTISTATTAL	11	Unmodified	_DSTISTATTAL_					0	0	0		ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2339477539062	2	540.774593	1079.53463	0.32877	0.00017779	0.77906	0.00042129	1.1078	0.00059908	540.7748970929946	18.414	0.39788	18.414	18.216	18.614	0					20	13	2	0	0	0	0.33255	1	1980	1980		2.9952	0.93549	1	61139			6072	2085	3087	3087	8459	8459					-0.00195196072672843
DSVIISRI	8	Unmodified	_DSVIISRI_					0	0	0		nc|ENSG00000072415|Q8N3R9-2|PALS1;ENSG00000072415|ENST00000261681|PALS1	nc|ENSG00000072415|Q8N3R9-2|PALS1	nc|ENSG00000072415|Q8N3R9-2|PALS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.5543518066406	2	451.768917	901.523281	0.37149	0.00016783	-1.0522	-0.00047536	-0.68072	-0.00030753	451.7682945331625	48.753	0.43787	48.798	48.497	48.935	0.044891					21	15	2	0	0	0	0.21873	1	11186	11186		41.84	0	1	366480			6073	981	3088	3088	8460	8460					0.06858071414524147
DSVVLERL	8	Unmodified	_DSVVLERL_					0	0	0		nc|ENSG00000133454|Q8IUG5-2|MYO18B;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.9237060546875	2	465.766374	929.518196	0.17873	8.3246E-05	-0.2848	-0.00013265	-0.10607	-4.9403E-05	465.7663062061851	48.449	0.34428	48.449	48.238	48.582	0					17	11	2	0	0	0	0.15302	1	11072	11072		63.961	0	1	134680			6074	3712	3089	3089	8461	8461					0.05061767551910634
DSVVLERL	8	Unmodified	_DSVVLERL_					0	0	0		nc|ENSG00000133454|Q8IUG5-2|MYO18B;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.9237976074219	2	465.766374	929.518196	0.42267	0.00019686	-0.39764	-0.00018521	0.025024	1.1655E-05	465.7664395869038	48.319	0.39521	48.363	48.218	48.614	0.04332					17	14	2	0	0	0	0.2191	1	11028	11028		51.63	0	1	133460			6075	3712	3089	3089	8462	8462					0.05061767551910634
DSYGGLRNV	9	Unmodified	_DSYGGLRNV_					0	0	0		ENST00000540438.5_1_11:113669964-113691034:-|nuORF;nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28	ENST00000540438.5_1_11:113669964-113691034:-|nuORF	ENST00000540438.5_1_11:113669964-113691034:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.74346923828125	2	490.743431	979.472308	0.58984	0.00028946	-0.3579	-0.00017564	0.23194	0.00011382	490.7431594165232	36.964	0.45706	36.964	36.724	37.181	0					29	15	2	0	0	0	0.0042138	1	7564	7564		92.653	54.679	1	315300			6076	639	3090	3090	8463	8463					-0.01824877630338051
DSYGGLRNV	9	Unmodified	_DSYGGLRNV_					0	0	0		ENST00000540438.5_1_11:113669964-113691034:-|nuORF;nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28	ENST00000540438.5_1_11:113669964-113691034:-|nuORF	ENST00000540438.5_1_11:113669964-113691034:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.27191162109375	2	490.743431	979.472308	0.44156	0.00021669	-0.20264	-9.9446E-05	0.23892	0.00011725	490.7432718585532	36.774	0.543	36.862	36.626	37.169	0.08741					32	19	2	0	0	0	0.0080395	1	7508	7508		92.653	50.814	1	333880			6077	639	3090	3090	8464	8464					-0.01824877630338051
DSYGGLRNV	9	Unmodified	_DSYGGLRNV_					0	0	0		ENST00000540438.5_1_11:113669964-113691034:-|nuORF;nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28	ENST00000540438.5_1_11:113669964-113691034:-|nuORF	ENST00000540438.5_1_11:113669964-113691034:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2718200683594	2	490.743431	979.472308	0.6717	0.00032963	-0.35464	-0.00017404	0.31706	0.00015559	490.7431279039743	36.808	0.50999	36.901	36.687	37.197	0.093014					30	18	2	0	0	0	0.24993	1	7468	7468		13.042	3.695	1	329010			6078	639	3090	3090	8465	8465					-0.01824877630338051
DSYLHSSGVFL	11	Unmodified	_DSYLHSSGVFL_					0	0	0			REV__ENSG00000186452|ENST00000398458|TMPRSS12	REV__ENSG00000186452|ENST00000398458|TMPRSS12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.8680114746094	3	408.868027	1223.58225	0.017762	7.2625E-06	-0.033575	-1.3728E-05	-0.015813	-6.4654E-06	408.8679844230208	51.507	1.0739	51.507	51.222	52.296	0					128	39	5	0	0	0	0.34542	1	12085	12085		10.315	10.315	1	6967600	+		6079	18448	3091	3091	8466	8466					-0.020594970817910507
DSYLITRSI	9	Unmodified	_DSYLITRSI_					0	0	0		ENSG00000065809|ENST00000181796|FAM107B;ENST00000471815.5_1_10:14572088-14646275:-|nuORF	ENSG00000065809|ENST00000181796|FAM107B	ENSG00000065809|ENST00000181796|FAM107B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2800903320312	2	534.290214	1066.56587	0.5501	0.00029391	0.67806	0.00036228	1.2282	0.0006562	534.7922783809829	53.395	0.30706	53.385	53.278	53.585	-0.0096054					17	11	2	0	0	0	0.12765	1	12650	12650		34.222	14.783	1	346590			6080	825	3092	3092	8467	8467					0.03525421752101465
DSYPRNPTV	9	Unmodified	_DSYPRNPTV_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7567749023438	2	524.756538	1047.49852	0.78639	0.00041266	-0.28251	-0.00014825	0.50387	0.00026441	524.7563810091372	32.427	0.92013	32.427	32.119	33.039	0					80	32	4	0	0	0	0.00054549	3	6207	6158;6207;6268		128.57	74.74	1	2306300			6081	719	3093	3093	8468;8469;8470	8469					-0.0233260845886889
DSYPRNPTV	9	Unmodified	_DSYPRNPTV_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7567138671875	2	524.756538	1047.49852	0.78876	0.0004139	-0.37348	-0.00019599	0.41528	0.00021792	524.7563442189049	32.296	0.85252	32.352	32.066	32.919	0.055309					82	30	5	0	0	0	0.0032746	2	6125	6125;6177		100.09	51.236	1	2382800			6082	719	3093	3093	8471;8472	8471					-0.0233260845886889
DSYPRNPTV	9	Unmodified	_DSYPRNPTV_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7567138671875	2	524.756538	1047.49852	0.53175	0.00027904	-0.054369	-2.853E-05	0.47738	0.00025051	524.7564728480852	32.324	0.85883	32.378	32.072	32.931	0.054371					81	30	4	0	0	0	0.0066776	2	6127	6127;6177		84.522	46.347	1	2656200			6083	719	3093	3093	8473;8474	8473					-0.0233260845886889
DSYPVVNLI	9	Unmodified	_DSYPVVNLI_					0	0	0		nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2738342285156	2	510.274032	1018.53351	0.3244	0.00016553	-0.32929	-0.00016803	-0.004888	-2.4942E-06	510.27376017577967	79.862	0.99724	79.862	79.441	80.438	0					83	37	3	0	0	0	0.0039377	1	20758	20758		107.19	58.841	1	586740			6084	7756	3094	3094	8475	8475					0.02498634349092299
DSYPVVNLI	9	Unmodified	_DSYPVVNLI_					0	0	0		nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2738952636719	2	510.274032	1018.53351	0.29575	0.00015091	-0.40248	-0.00020538	-0.10673	-5.4461E-05	510.2737146837235	79.76	0.8894	79.821	79.394	80.283	0.061417					61	33	2	0	0	0	0.042824	1	20726	20726		75.761	37.787	1	614820			6085	7756	3094	3094	8476	8476					0.02498634349092299
DSYPVVNLI	9	Unmodified	_DSYPVVNLI_					0	0	0		nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2737731933594	2	510.274032	1018.53351	0.29985	0.000153	-0.48096	-0.00024542	-0.18111	-9.2417E-05	510.2736912669864	79.925	1.0316	79.896	79.371	80.403	-0.028923					58	37	2	0	0	0	0.0059482	2	20695	20695;20750		85.642	47.668	1	628390			6086	7756	3094	3094	8477;8478	8477					0.02498634349092299
DSYTLHKI	8	Unmodified	_DSYTLHKI_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000581764.1_1_17:61907522-61908306:+|nuORF;ENST00000496846.1_1_7:30411448-30411829:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2926025390625	2	488.758549	975.502546	0.38126	0.00018634	0.18892	9.2334E-05	0.57017	0.00027868	488.7584398341447	30.258	0.64046	30.258	30.034	30.674	0					62	22	4	0	0	0	0.062079	1	5523	5523		85.357	24.967	1	787250			6087	1298	3095	3095	8479	8479					0.013814810348435458
DSYTLHKI	8	Unmodified	_DSYTLHKI_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000581764.1_1_17:61907522-61908306:+|nuORF;ENST00000496846.1_1_7:30411448-30411829:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2925109863281	2	488.758549	975.502546	0.37275	0.00018218	-0.058216	-2.8454E-05	0.31453	0.00015373	488.75844720527266	30.257	0.72934	30.285	29.992	30.721	0.027946					58	25	3	0	0	0	0.14998	1	5551	5551		71.922	25.901	1	807370			6088	1298	3095	3095	8480	8480					0.013814810348435458
DSYTLHKI	8	Unmodified	_DSYTLHKI_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000581764.1_1_17:61907522-61908306:+|nuORF;ENST00000496846.1_1_7:30411448-30411829:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2925109863281	2	488.758549	975.502546	0.010197	4.9838E-06	0.34296	0.00016762	0.35316	0.00017261	488.7585803909446	30.255	0.70629	30.282	30.052	30.758	0.027157					70	24	4	0	0	0	0.16018	1	5516	5516		67.344	6.9543	1	823440			6089	1298	3095	3095	8481	8481					0.013814810348435458
DSYTPKVI	8	Unmodified	_DSYTPKVI_					0	0	0		ENSG00000133872|ENST00000256255|SARAF;ENST00000517569.1_1_8:29931365-29940465:-|nuORF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.7478332519531	2	461.74765	921.480748	-0.20961	-9.6789E-05	0.61086	0.00028206	0.40125	0.00018528	461.7478184022207	42.234	0.91035	42.234	41.932	42.842	0					81	32	3	0	0	0	0.013309	3	9174	9129;9174;9223		111.29	66.88	1	5041100			6090	3736	3096	3096	8482;8483;8484	8483					0.01686676286283273
DSYTPKVI	8	Unmodified	_DSYTPKVI_					0	0	0		ENSG00000133872|ENST00000256255|SARAF;ENST00000517569.1_1_8:29931365-29940465:-|nuORF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.7478332519531	2	461.74765	921.480748	0.16321	7.5361E-05	0.16813	7.7633E-05	0.33134	0.00015299	461.74762909737296	42.126	1.0131	42.211	41.848	42.861	0.085197					89	36	4	0	0	0	0.027083	3	9097	9097;9138;9182		92.491	56.447	1	4064700			6091	3736	3096	3096	8485;8486;8487	8485					0.01686676286283273
DSYTPKVI	8	Unmodified	_DSYTPKVI_					0	0	0		ENSG00000133872|ENST00000256255|SARAF;ENST00000517569.1_1_8:29931365-29940465:-|nuORF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.74798583984375	2	461.74765	921.480748	0.33472	0.00015455	-0.012559	-5.7991E-06	0.32216	0.00014876	461.7475468029309	42.03	0.96307	42.121	41.809	42.772	0.091362					78	33	3	0	0	0	0.027083	3	9066	9066;9115;9166		92.491	54.34	1	4090400			6092	3736	3096	3096	8488;8489;8490	8488					0.01686676286283273
DTDHRPMSHV	10	Unmodified	_DTDHRPMSHV_					0	0	0			REV__ENST00000324545.8_2_X:41093181-41093415:+|nuORF	REV__ENST00000324545.8_2_X:41093181-41093415:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8445434570312	2	597.769654	1193.52475	0.28826	0.00017231	1.0111	0.00060438	1.2993	0.00077669	597.7699653442539	17.785	0.62165	17.725	17.33	17.951	-0.060431					38	21	3	0	0	0	0.32123	1	1763	1763		1.6526	0	1	47162	+		6093	19986	3097	3097	8491	8491					-0.06426662559033502
DTFLEKILES	10	Unmodified	_DTFLEKILES_					0	0	0			REV__nc|ENSG00000109572|P51790-2|CLCN3;REV__nc|ENSG00000109572|P51790-4|CLCN3	REV__nc|ENSG00000109572|P51790-4|CLCN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.2957153320312	2	597.816261	1193.61797	0.73988	0.00044231	0.49464	0.0002957	1.2345	0.00073801	597.815986349962	78.817	0.30306	78.787	78.63	78.933	-0.030434					15	11	2	0	0	0	0.31515	1	20383	20383		12.241	0	1	67803	+		6094	22936;14644	3098	3098	8492	8492					0.028905403752105485
DTFRIPLI	8	Unmodified	_DTFRIPLI_					0	0	0		ENST00000495807.1_1_6:31829758-31830565:-|nuORF;ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000495807.1_1_6:31829758-31830565:-|nuORF	ENST00000495807.1_1_6:31829758-31830565:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.78753662109375	2	487.78711	973.559667	0.20907	0.00010198	0.89948	0.00043876	1.1085	0.00054074	487.78770457479317	76.433	0.84714	76.433	76.11	76.957	0					102	30	5	0	0	0	0.013309	4	19708	19662;19708;19751;19814		111.29	40.153	1	4640200			6095	8221	3099	3099	8493;8494;8495;8496	8494					0.07182948311253767
DTFRIPLI	8	Unmodified	_DTFRIPLI_					0	0	0		ENST00000495807.1_1_6:31829758-31830565:-|nuORF;ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000495807.1_1_6:31829758-31830565:-|nuORF	ENST00000495807.1_1_6:31829758-31830565:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7875671386719	2	487.78711	973.559667	0.10228	4.9891E-05	0.69672	0.00033985	0.799	0.00038974	487.7875367396849	76.411	0.93101	76.465	76.02	76.951	0.053413					93	32	4	0	0	0	0.013309	4	19681	19639;19681;19726;19778		111.29	40.153	1	4681100			6096	8221	3099	3099	8497;8498;8499;8500	8498					0.07182948311253767
DTFRIPLI	8	Unmodified	_DTFRIPLI_					0	0	0		ENST00000495807.1_1_6:31829758-31830565:-|nuORF;ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000495807.1_1_6:31829758-31830565:-|nuORF	ENST00000495807.1_1_6:31829758-31830565:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7876281738281	2	487.78711	973.559667	0.42421	0.00020692	0.62436	0.00030456	1.0486	0.00051148	487.78755829895755	76.487	0.82263	76.455	76.137	76.96	-0.031479					99	30	4	0	0	0	0.021656	4	19718	19667;19718;19763;19783		99.799	28.665	1	4830000			6097	8221	3099	3099	8501;8502;8503;8504	8502					0.07182948311253767
DTGDLVVLDV	10	Unmodified	_DTGDLVVLDV_					0	0	0		ENST00000509378.1_1_4:165110527-165110881:+|nuORF	ENST00000509378.1_1_4:165110527-165110881:+|nuORF	ENST00000509378.1_1_4:165110527-165110881:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.8137817382812	2	523.274229	1044.53391	0.27521	0.00014401	1.2586	0.0006586	1.5338	0.00080261	523.2748081692259	17.982	0.10761	17.922	17.844	17.951	-0.060431					5	3	2	0	0	0	0.32132	1	1789	1789		1.4819	0.28856	1	19901			6098	11356	3100	3100	8505	8505					0.013420092782780557
DTKKKNETK	9	Unmodified	_DTKKKNETK_					0	0	0		ENST00000262971.2_1_19:4038003-4038114:+|nuORF	ENST00000262971.2_1_19:4038003-4038114:+|nuORF	ENST00000262971.2_1_19:4038003-4038114:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.7971801757812	2	546.306395	1090.59824	0.13353	7.2951E-05	-0.61667	-0.00033689	-0.48313	-0.00026394	546.3061808584833	12.689	0.18583	12.622	12.548	12.734	-0.067496					7	5	2	0	0	0	0.26031	1	189	189		3.5965	0	1	23964			6099	8993	3101	3101	8506	8506					0.056562091550858895
DTKKKNETK	9	Unmodified	_DTKKKNETK_					0	0	0		ENST00000262971.2_1_19:4038003-4038114:+|nuORF	ENST00000262971.2_1_19:4038003-4038114:+|nuORF	ENST00000262971.2_1_19:4038003-4038114:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	546.306395	1090.59824	0.10156	5.5482E-05	-0.10877	-5.9424E-05	-0.0072152	-3.9417E-06	546.3058387515057	12.666	0.1695	12.666	12.582	12.751	0	0.022241	0.00038771	NaN	3.5965	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13814			6100	8993	3101	3101							0.056562091550858895
DTKLSKLSP	9	Unmodified	_DTKLSKLSP_					0	0	0			REV__ENSG00000006634|ENST00000265728|DBF4	REV__ENSG00000006634|ENST00000265728|DBF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.80010986328125	2	494.787307	987.560061	0.12257	6.0645E-05	0.88494	0.00043785	1.0075	0.0004985	494.78760260429385	24.665	0.34742	24.633	24.515	24.862	-0.031408					20	11	2	0	0	0	0.31038	1	3882	3882		7.2892	0	1	74082	+		6101	13367	3102	3102	8507	8507					0.06578323240421469
DTKLSKLSP	9	Unmodified	_DTKLSKLSP_					0	0	0			REV__ENSG00000006634|ENST00000265728|DBF4	REV__ENSG00000006634|ENST00000265728|DBF4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	494.787307	987.560061	0.36379	0.00018	-0.41247	-0.00020408	-0.04868	-2.4086E-05	494.78700355618037	24.673	0.40211	24.617	24.486	24.888	-0.055931	-0.010178	-0.00075918	NaN	7.2892	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49519	+		6102	13367	3102	3102							0.06578323240421469
DTKLSKLSP	9	Unmodified	_DTKLSKLSP_					0	0	0			REV__ENSG00000006634|ENST00000265728|DBF4	REV__ENSG00000006634|ENST00000265728|DBF4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	494.787307	987.560061	0.12257	6.0645E-05	0.88494	0.00043785	1.0075	0.0004985	494.78760260429385	24.665	0.34742	24.633	24.515	24.862	-0.031408	0.0063046	0.0005247	NaN	7.2892	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74082	+		6103	13367	3102	3102							0.06578323240421469
DTKSMYKN	8	Unmodified	_DTKSMYKN_					0	0	0		L1PA3_dup1464|chr2:208773458-208776294:+|1.730898577886428|0.207304446788351|3.06|523.0|34|2|sense;L1PA4_dup1160|chr2:91782775-91784994:+|2.5253371533198647|0.3095922205464006|3.03|525.0|7|1|sense;L1PA3_dup8093|chr11:58696286-58700694:-|8.889446604907338|0.3518458624306171|4.66|529.0|56|2|sense;L1PA3_dup6831|chrX:106827828-106830948:+|1.112501382732906|0.4076652707632567|1.45|539.0|39|2|sense;L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|141|3|sense;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|70|2|sense	L1PA3_dup1464|chr2:208773458-208776294:+|1.730898577886428|0.207304446788351|3.06|523.0|34|2|sense	L1PA3_dup1464|chr2:208773458-208776294:+|1.730898577886428|0.207304446788351|3.06|523.0|34|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.3081359863281	2	493.734217	985.453881	0.26842	0.00013253	-1.0497	-0.00051828	-0.7813	-0.00038575	493.73327652260855	95.937	0.1617	96.015	95.932	96.093	0.077408					17	13	2	0	0	0	0.344	1	25623	25623		2.5775	0	1	88917			6104	12438	3103	3103	8508	8508					-0.03942755596540337
DTLGVEPL	8	Unmodified	_DTLGVEPL_					0	0	0			REV__ENST00000342879.7_1_19:35646325-35646499:+|nuORF	REV__ENST00000342879.7_1_19:35646325-35646499:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5714416503906	2	422.226551	842.438549	0.086373	3.6469E-05	3.421	0.0014444	3.5074	0.0014809	422.2277961295433	46.054	0.38541	46.119	45.951	46.336	0.065048					16	13	2	0	0	0	0.34247	1	10370	10370		2.0598	0	1	129120	+		6105	20128	3104	3104	8509	8509					0.011027008779137759
DTLKIIPVT	9	Unmodified	_DTLKIIPVT_					0	0	0			REV__nc|ENSG00000112941|Q5XG87-2|TENT4A	REV__nc|ENSG00000112941|Q5XG87-2|TENT4A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2956848144531	2	500.307875	998.601197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.141	1	47.141	46.641	47.641	0								0	0	0	0.19804	1	10681	10681		23.148	1.4018	1		+		6106	14793	3105	3105	8510	8510					0.10184084279910621
DTNESYFCY	9	Unmodified	_DTNESYFCY_					0	0	0			REV__nc|ENSG00000074527|Q9HB63-3|NTN4	REV__nc|ENSG00000074527|Q9HB63-3|NTN4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2890014648438	2	571.210772	1140.40699	0.096802	5.5294E-05	1.581	0.00090307	1.6778	0.00095836	571.2117834427294	66.823	0.4662	66.81	66.572	67.038	-0.013588					30	16	3	0	0	0	0.25811	1	16710	16710		0.6015	0	1	232810	+		6107	13789	3106	3106	8511	8511					-0.15759659938362347
DTPILSLVD	9	Unmodified	_DTPILSLVD_					0	0	0			REV__ENSG00000198515|ENST00000514170|CNGA1	REV__ENSG00000198515|ENST00000514170|CNGA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7791748046875	2	486.76604	971.517527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.051	1	68.051	67.551	68.551	0								0	0	0	0.20639	1	17121	17121		20.454	4.6064	1		+		6108	18828	3107	3107	8512	8512					0.03062928112183272
DTPILSLVD	9	Unmodified	_DTPILSLVD_					0	0	0			REV__ENSG00000198515|ENST00000514170|CNGA1	REV__ENSG00000198515|ENST00000514170|CNGA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7794189453125	2	486.76604	971.517527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.056	1	68.039	67.539	68.539	-0.016296								0	0	0	0.22065	1	17111	17111		15.847	3.3156	1		+		6109	18828	3107	3107	8513	8513					0.03062928112183272
DTPISHSDLL	10	Unmodified	_DTPISHSDLL_					0	0	0			REV__nc|ENSG00000070748|P28329-3|CHAT	REV__nc|ENSG00000070748|P28329-3|CHAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7595825195312	2	549.277303	1096.54005	0.7747	0.00042552	1.7558	0.00096441	2.5305	0.0013899	549.2793142584244	78.271	0.43922	78.329	78.115	78.554	0.058151					27	15	2	0	0	0	0.30958	1	20185	20185		19.257	0	1	219510	+		6110	13733	3108	3108	8514	8514					-0.0043547249019866285
DTQNLFCEKL	10	Carbamidomethyl (C)	_DTQNLFC(Carbamidomethyl (C))EKL_	DTQNLFC(1)EKL		DTQNLFC(50)EKL		0	1	0			REV__nc|ENSG00000110484|Q13296-2|SCGB2A2	REV__nc|ENSG00000110484|Q13296-2|SCGB2A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3029174804688	2	634.302995	1266.59144	0.58116	0.00036863	0.073036	4.6327E-05	0.6542	0.00041496	634.303096226877	56.707	1.9479	56.785	56.485	58.433	0.078674					173	71	5	0	0	0	0.093201	1	13734	13734		49.554	11.379	1	11522000	+		6111	14673	3109	3109	8515	8515	22				-0.031194717877951916
DTRRQPVKA	9	Unmodified	_DTRRQPVKA_					0	0	0		THE1-int_dup204|chr19:6582810-6583003:-|2.301127010833396|0.0156202008557334|7.2|516.0|6|3|sense	THE1-int_dup204|chr19:6582810-6583003:-|2.301127010833396|0.0156202008557334|7.2|516.0|6|3|sense	THE1-int_dup204|chr19:6582810-6583003:-|2.301127010833396|0.0156202008557334|7.2|516.0|6|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.299072265625	2	535.806897	1069.59924	0.43073	0.00023079	0.45608	0.00024437	0.88681	0.00047516	535.8068407338926	17.622	0.47453	17.622	17.424	17.898	0					22	15	2	0	0	0	0.25706	1	1755	1755		6.7232	0.51738	1	41888			6112	23390	3110	3110	8516	8516					0.06722468314683283
DTRRQPVKA	9	Unmodified	_DTRRQPVKA_					0	0	0		THE1-int_dup204|chr19:6582810-6583003:-|2.301127010833396|0.0156202008557334|7.2|516.0|6|3|sense	THE1-int_dup204|chr19:6582810-6583003:-|2.301127010833396|0.0156202008557334|7.2|516.0|6|3|sense	THE1-int_dup204|chr19:6582810-6583003:-|2.301127010833396|0.0156202008557334|7.2|516.0|6|3|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	535.806897	1069.59924	0.35644	0.00019098	0.79119	0.00042393	1.1476	0.00061491	535.8071614809885	17.819	0.39801	17.759	17.502	17.9	-0.060429	0.075884	0.00031487	NaN	3.5965	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54278			6113	23390	3110	3110							0.06722468314683283
DTSHSDINHI	10	Unmodified	_DTSHSDINHI_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.2852172851562	2	569.759809	1137.50507	0.17595	0.00010025	-3.5003	-0.0019943	-3.3244	-0.0018941	569.75713919796	16.765	0.5197	16.765	16.521	17.041	0					26	17	2	0	0	0	0.32072	1	1413	1413		2.9952	0.69251	1	120700	+		6114	16298	3111	3111	8517	8517					-0.05818715298119059
DTSPSPKPEVF	11	Unmodified	_DTSPSPKPEVF_					0	0	0		nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12	nc|ENSG00000101745|Q6UB98-2|ANKRD12	nc|ENSG00000101745|Q6UB98-2|ANKRD12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.2975463867188	2	602.298236	1202.58192	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.369	1	82.442	81.942	82.942	0.073097								0	0	0	0.35728	1	21491	21491		6.6304	0.42459	1				6115	1718	3112	3112	8518	8518					-0.011269168016724507
DTSTHFHQTF	10	Unmodified	_DTSTHFHQTF_					0	0	0		ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.7696533203125	2	610.770177	1219.5258	0.4126	0.00025201	-0.96186	-0.00058747	-0.54925	-0.00033547	610.7698996229547	68.692	0.76508	68.692	68.408	69.174	0					64	27	4	0	0	0	0.19885	2	17292	17292;17341		32.786	5.902	1	1048600			6116	5330	3113	3113	8519;8520	8519					-0.07518124918487956
DTSTHFHQTF	10	Unmodified	_DTSTHFHQTF_					0	0	0		ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.7698364257812	2	610.770177	1219.5258	0.34651	0.00021164	-0.92807	-0.00056684	-0.58156	-0.0003552	610.7697233887783	68.619	0.96207	68.691	68.383	69.346	0.071938					81	35	4	0	0	0	0.19885	1	17282	17282		32.786	3.7041	1	1372000			6117	5330	3113	3113	8521	8521					-0.07518124918487956
DTSTHFHQTF	10	Unmodified	_DTSTHFHQTF_					0	0	0		ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	610.770177	1219.5258	0.4126	0.00025201	-0.96186	-0.00058747	-0.54925	-0.00033547	610.7698996229547	68.692	0.76508	68.692	68.408	69.174	0	0.0037588	1.3499E-05	NaN	32.786	64	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1048600			6118	5330	3113	3113							-0.07518124918487956
DTSTHFHQTF	10	Unmodified	_DTSTHFHQTF_					0	0	0		ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	ENSG00000157851|ENST00000288699|DPYSL5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	610.770177	1219.5258	0.34651	0.00021164	-0.92807	-0.00056684	-0.58156	-0.0003552	610.7697233887783	68.619	0.96207	68.691	68.383	69.346	0.071938	0.0025225	5.4766E-05	NaN	32.786	81	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1372000			6119	5330	3113	3113							-0.07518124918487956
DTTAVPYVF	9	Unmodified	_DTTAVPYVF_					0	0	0		ENST00000465560.5_1_2:86333370-86346707:+|nuORF;ENSG00000132300|ENST00000254630|PTCD3	ENST00000465560.5_1_2:86333370-86346707:+|nuORF	ENST00000465560.5_1_2:86333370-86346707:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.3087463378906	2	506.752933	1011.49131	0.32009	0.00016221	2.7281	0.0013825	3.0482	0.0015447	506.75437549580664	51.978	0.43616	52.028	51.846	52.282	0.050571					27	15	2	0	0	0	0.19839	1	12125	12125		15.847	4.2069	1	252790			6120	3618	3114	3114	8522	8522					-0.01397341059282553
DTTHPISYYK	10	Unmodified	_DTTHPISYYK_					0	0	0		ENSG00000100121|ENST00000448514|GGTLC2;nc|ENSG00000100031|P19440-3|GGT1;ENSG00000149435|ENST00000335694|GGTLC1;ENSG00000100031|ENST00000400382|GGT1	ENSG00000100121|ENST00000448514|GGTLC2	ENSG00000100121|ENST00000448514|GGTLC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.798583984375	2	612.798403	1223.58225	0.35132	0.00021529	-0.11158	-6.8378E-05	0.23973	0.00014691	612.7982918153627	51.522	0.99135	51.522	51.248	52.239	0					93	36	4	0	0	0	0.29092	1	12094	12094		21.537	21.537	1	4121500			6121	1521	3115	3115	8523	8523					-0.02059497081813788
DTTQQPTL	8	Unmodified	_DTTQQPTL_					0	0	0			REV__ENST00000309775.8_1_11:65233585-65233747:+|nuORF	REV__ENST00000309775.8_1_11:65233585-65233747:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.7404479980469	2	452.224539	902.434526	0.20769	9.3924E-05	0.10207	4.6159E-05	0.30977	0.00014008	452.22454010603354	32.785	0.35854	32.841	32.704	33.063	0.055309					19	12	2	0	0	0	0.3366	1	6260	6260		18.135	0	1	59403	+		6122	19888	3116	3116	8524	8524					-0.020593886158053465
DTVKALRV	8	Unmodified	_DTVKALRV_					0	0	0		ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2776184082031	2	451.276909	900.539266	0.031185	1.4073E-05	0.86101	0.00038855	0.8922	0.00040263	451.27719361029807	28.6	0.36077	28.596	28.359	28.72	-0.0042572					20	12	2	0	0	0	0.28696	1	5014	5014		32.305	14.171	1	155530			6123	6453	3117	3117	8525	8525					0.08501777651417797
DTVRHHVV	8	Unmodified	_DTVRHHVV_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.2719421386719	2	481.761958	961.509363	0.25779	0.00012419	-2.4416	-0.0011763	-2.1838	-0.0010521	481.7606820650446	30.362	0.85451	30.362	30.034	30.889	0					35	30	2	0	0	0	0.34272	1	5596	5596		7.9102	0	1	86060			6124	423	3118	3118	8526	8526					0.02706838706092185
DTYSQMHSW	9	Unmodified	_DTYSQMHSW_					0	0	0		nc|ENSG00000149488|Q8TDI7-3|TMC2	nc|ENSG00000149488|Q8TDI7-3|TMC2	nc|ENSG00000149488|Q8TDI7-3|TMC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.8139038085938	2	577.732206	1153.44986	0.43714	0.00025255	0.9812	0.00056687	1.4183	0.00081942	577.7327751698991	65.702	0.29671	65.691	65.53	65.827	-0.011337					19	10	2	0	0	0	0.25202	1	16370	16370		3.5965	0	1	189830			6125	12753	3119	3119	8527	8527					-0.12072845090256124
DTYSVALDSDY	11	Unmodified	_DTYSVALDSDY_					0	0	0			REV__MED13|p.N1136Tfs*11|1|0.24|ENSG00000108510|chr17:61982596-61982596|T/-|frameshift_variant	REV__MED13|p.N1136Tfs*11|1|0.24|ENSG00000108510|chr17:61982596-61982596|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.2688598632812	2	624.766965	1247.51938	0.55483	0.00034664	-0.047898	-2.9925E-05	0.50694	0.00031672	624.7670737325562	74.322	1.0801	74.322	74.098	75.178	0					95	37	4	0	0	0	0.23983	1	19012	19012		27.629	10.516	1	1824800	+		6126	14600	3120	3120	8528	8528					-0.0944810766052342
DTYSVALDSDY	11	Unmodified	_DTYSVALDSDY_					0	0	0			REV__MED13|p.N1136Tfs*11|1|0.24|ENSG00000108510|chr17:61982596-61982596|T/-|frameshift_variant	REV__MED13|p.N1136Tfs*11|1|0.24|ENSG00000108510|chr17:61982596-61982596|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.7675170898438	2	624.766965	1247.51938	0.0014901	9.3099E-07	0.69567	0.00043463	0.69716	0.00043556	624.7674124659098	74.252	1.0987	74.304	74.06	75.159	0.052368					107	38	5	0	0	0	0.35522	2	19036	19036;19087		17.113	4.8722	1	1940200	+		6127	14600	3120	3120	8529;8530	8529					-0.0944810766052342
DVAKNLGLLF	10	Unmodified	_DVAKNLGLLF_					0	0	0			REV__ENST00000248114.6_2_16:2036667-2036802:+|nuORF	REV__ENST00000248114.6_2_16:2036667-2036802:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.316650390625	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.74	1	114.72	114.22	115.22	-0.019096								0	0	0	0.38166	1	29778	29778		1.4819	0	1		+		6128	19511	3121	3121	8531	8531					0.08222889028456848
DVAKNLGLLF	10	Unmodified	_DVAKNLGLLF_					0	0	0			REV__ENST00000248114.6_2_16:2036667-2036802:+|nuORF	REV__ENST00000248114.6_2_16:2036667-2036802:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3167114257812	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.14	1	115.12	114.62	115.62	-0.020988								0	0	0	0.37664	1	29868	29868		3.5965	0	1		+		6129	19511	3121	3121	8532	8532					0.08222889028456848
DVASRGLDI	9	Unmodified	_DVASRGLDI_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;ENST00000601772.1_1_19:19035054-19035967:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47	ENSG00000105671|ENST00000247003|DDX49;ENST00000541537.5_1_12:12966301-12977638:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7744445800781	2	473.253631	944.49271	0.093943	4.4459E-05	1.1555	0.00054686	1.2495	0.00059132	473.254219731833	32.901	0.17373	32.901	32.837	33.011	0					6	5	2	0	0	0	0.2524	1	6313	6313		11.495	1.4208	1	77399			6130	2006;8364	3122	3122	8533	8533					0.018242930294718462
DVEFIMQF	8	Unmodified	_DVEFIMQF_					0	0	0			REV__nc|ENSG00000173715|Q8N6T0-5|TOP6BL	REV__nc|ENSG00000173715|Q8N6T0-5|TOP6BL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2697143554688	2	514.741511	1027.46847	0.13148	6.7678E-05	2.3136	0.0011909	2.4451	0.0012586	514.742410766656	39.576	0.60336	39.668	39.226	39.83	0.09267					29	21	2	0	0	0	0.29855	1	8390	8390		32.117	12.678	1	130840	+		6131	17800	3123	3123	8534	8534					-0.044166834484030915
DVEFIMQF	8	Unmodified	_DVEFIMQF_					0	0	0			REV__nc|ENSG00000173715|Q8N6T0-5|TOP6BL	REV__nc|ENSG00000173715|Q8N6T0-5|TOP6BL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2698974609375	2	514.741511	1027.46847	0.18625	9.587E-05	2.3504	0.0012098	2.5366	0.0013057	515.2446704204067	39.58	0.60785	39.679	39.236	39.844	0.099407					27	21	2	0	0	0	0.27422	1	8374	8374		32.117	15.175	1	178440	+		6132	17800	3123	3123	8535	8535					-0.044166834484030915
DVEFIMQF	8	Unmodified	_DVEFIMQF_					0	0	0			REV__nc|ENSG00000173715|Q8N6T0-5|TOP6BL	REV__nc|ENSG00000173715|Q8N6T0-5|TOP6BL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	514.741511	1027.46847	-0.028922	-1.4887E-05	2.1205	0.0010915	2.0916	0.0010766	514.7425595436758	39.447	0.15907	39.447	39.321	39.48	0	-0.15124	-0.00013546	NaN	32.117	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98462	+		6133	17800	3123	3123							-0.044166834484030915
DVEHATVVLQ	10	Unmodified	_DVEHATVVLQ_					0	0	0			REV__ENST00000541658.2_1_14:35704472-35704841:-|nuORF	REV__ENST00000541658.2_1_14:35704472-35704841:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3217163085938	2	555.793121	1109.57169	0.47163	0.00026213	-0.45885	-0.00025502	0.012781	7.1037E-06	555.7929353066245	41.816	0.6757	41.913	41.77	42.446	0.096626					48	23	3	0	0	0	0.31515	1	9161	9161		12.241	0.74595	1	723470	+		6134	22129	3124	3124	8536	8536					0.021285202637500333
DVELREAQR	9	Unmodified	_DVELREAQR_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3291015625	2	558.293819	1114.57309	0.61663	0.00034426	3.0992	0.0017302	3.7158	0.0020745	558.2951058918661	32.023	0.55455	32.065	31.994	32.549	0.042362					23	19	2	0	0	0	0.25843	1	6112	6112		5.7319	1.7875	1	308770			6135	2412	3125	3125	8537	8537					0.02038154352521815
DVELREAQR	9	Unmodified	_DVELREAQR_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	558.293819	1114.57309	0.52811	0.00029484	3.2889	0.0018362	3.817	0.002131	558.7982824311262	32.085	0.59983	32.085	31.982	32.582	0	0.0099114	0.0001349	NaN	5.7319	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346310			6136	2412	3125	3125							0.02038154352521815
DVELRIMP	8	Unmodified	_DVELRIMP_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;APC|p.R1687Tfs*13|1|0.33|ENSG00000134982|chr5:112840647-112840648|-/A|frameshift_variant	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7773742675781	2	486.762778	971.511002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.574	1	38.574	38.074	39.074	0								0	0	0	0.30279	1	8055	8055		28.487	3.0875	1				6137	3835	3126	3126	8538	8538					0.02410711679817723
DVESDFDDASI	11	Unmodified	_DVESDFDDASI_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.8356018066406	3	404.834941	1211.48299	-0.09292	-3.7617E-05	1.5849	0.00064162	1.492	0.00060401	404.8356814421264	29.563	0.61522	29.576	29.361	29.976	0.012264					43	20	3	0	0	0	0.46392	1	5339	5339		2.8433	0.21205	1	185060			6138	2373	3127	3127	8539	8539					-0.1142898455723298
DVETSRYNEL	10	Unmodified	_DVETSRYNEL_					0	0	0			REV__ENST00000588186.5_3_18:11905909-11906227:-|nuORF	REV__ENST00000588186.5_3_18:11905909-11906227:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.911865234375	3	409.194692	1224.56225	0.050552	2.0686E-05	0.68036	0.0002784	0.73091	0.00029909	409.19486908366883	24.153	0.59104	24.081	23.852	24.443	-0.072559					30	19	2	0	0	0	0.32122	1	3675	3675		2.086	0.17963	1	74837	+		6139	22524	3128	3128	8540	8540					-0.041052928124372556
DVFALHSL	8	Unmodified	_DVFALHSL_					0	0	0			REV__ENSG00000279961|ENST00000623286|OR8U3	REV__ENSG00000279961|ENST00000623286|OR8U3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7701721191406	2	451.242535	900.470518	0.5563	0.00025103	-0.35449	-0.00015996	0.20182	9.1069E-05	451.2420707903483	50.088	0.5875	50.108	49.85	50.437	0.020691					38	21	3	0	0	0	0.33245	1	11577	11577		19.439	19.439	1	248720	+		6140	19356	3129	3129	8541	8541					0.016301133517231392
DVFDRKGLYI	10	Unmodified	_DVFDRKGLYI_					0	0	0			REV__nc|ENSG00000120500|P36575-2|ARR3	REV__nc|ENSG00000120500|P36575-2|ARR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.22418212890625	3	409.224034	1224.65027	0.20128	8.2368E-05	0.12204	4.994E-05	0.32332	0.00013231	409.2239793980103	47.93	1.0039	47.93	47.578	48.582	0					96	35	3	0	0	0	0.37297	1	10980	10980		8.4443	0	1	9463500	+		6141	15085	3130	3130	8542	8542					0.046933725688631966
DVFLRLPLL	9	Unmodified	_DVFLRLPLL_					0	0	0		ENST00000515762.5_1_5:10450206-10461489:+|nuORF	ENST00000515762.5_1_5:10450206-10461489:+|nuORF	ENST00000515762.5_1_5:10450206-10461489:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3163452148438	2	543.33951	1084.66447	0.42851	0.00023283	-1.7161	-0.0009324	-1.2876	-0.00069958	543.3387744580357	33.695	0.74993	33.762	33.297	34.047	0.066704					50	26	3	0	0	0	0.21389	1	6571	6571		25.399	0	1	287190			6142	11431	3131	3131	8543	8543					0.12552069787784603
DVFNVPLVI	9	Unmodified	_DVFNVPLVI_					0	0	0		ENSG00000140105|ENST00000392882|WARS1;nc|ENSG00000140105|P23381-2|WARS1;SLC25A29-WARS|2|fusion;ENST00000554084.5_1_14:100819360-100828234:-|nuORF	ENSG00000140105|ENST00000392882|WARS1	ENSG00000140105|ENST00000392882|WARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.29473876953125	2	508.294768	1014.57498	0.0063339	3.2195E-06	0.80472	0.00040904	0.81106	0.00041226	508.29467186280306	97.382	0.70406	97.382	97.112	97.816	0					187	71	5	0	0	0	0.074552	2	26047	26010;26047		43.772	24.515	1	397200			6143	4284	3132	3132	8544;8545	8545					0.06827815108408686
DVFNVPLVI	9	Unmodified	_DVFNVPLVI_					0	0	0		ENSG00000140105|ENST00000392882|WARS1;nc|ENSG00000140105|P23381-2|WARS1;SLC25A29-WARS|2|fusion;ENST00000554084.5_1_14:100819360-100828234:-|nuORF	ENSG00000140105|ENST00000392882|WARS1	ENSG00000140105|ENST00000392882|WARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2947692871094	2	508.294768	1014.57498	0.1215	6.1759E-05	-0.055568	-2.8245E-05	0.065935	3.3514E-05	508.294623118188	97.239	0.64549	97.309	97.055	97.7	0.070465					173	68	3	0	0	0	0.088443	3	26018	25980;26018;26056		39.95	20.693	1	542450			6144	4284	3132	3132	8546;8547;8548	8547					0.06827815108408686
DVFNVPLVI	9	Unmodified	_DVFNVPLVI_					0	0	0		ENSG00000140105|ENST00000392882|WARS1;nc|ENSG00000140105|P23381-2|WARS1;SLC25A29-WARS|2|fusion;ENST00000554084.5_1_14:100819360-100828234:-|nuORF	ENSG00000140105|ENST00000392882|WARS1	ENSG00000140105|ENST00000392882|WARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.29461669921875	2	508.294768	1014.57498	0.28377	0.00014424	-0.23801	-0.00012098	0.045755	2.3257E-05	508.2945696119901	97.432	0.5709	97.426	97.122	97.693	-0.0055466					167	58	3	0	0	0	0.020233	3	26067	26029;26067;26105		63.961	44.704	1	473720			6145	4284	3132	3132	8549;8550;8551	8550					0.06827815108408686
DVFSGRKA	8	Unmodified	_DVFSGRKA_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.1615295410156	2	440.237784	878.461016	-0.075504	-3.324E-05	0.72593	0.00031958	0.65042	0.00028634	440.23784161931826	15.878	0.66938	15.878	15.679	16.349	0					50	23	3	0	0	0	0.344	1	1271	1271		2.5775	0	1	144500	+		6146	14768	3133	3133	8552	8552					0.01692345066192047
DVGKREFVEDG	11	Unmodified	_DVGKREFVEDG_					0	0	0		ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.9031066894531	3	417.53857	1249.59388	0.032461	1.3554E-05	-0.65088	-0.00027177	-0.61842	-0.00025822	417.53840303139634	17.768	0.3332	17.708	17.618	17.951	-0.060429					12	11	2	0	0	0	0.33236	1	1783	1783		4.4062	1.0865	1	15859			6147	8030	3134	3134	8553	8553					-0.02093300058481873
DVGRVRYLL	9	Unmodified	_DVGRVRYLL_					0	0	0		nc|ENSG00000114626|Q969K4-4|ABTB1;ENSG00000114626|ENST00000232744|ABTB1;ENST00000493365.5_1_3:127391868-127394958:+|nuORF;ENST00000479280.5_1_3:127391883-127395444:+|nuORF	nc|ENSG00000114626|Q969K4-4|ABTB1	nc|ENSG00000114626|Q969K4-4|ABTB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.7460327148438	2	545.822015	1089.62948	0.53527	0.00029216	3.6016	0.0019659	4.1369	0.002258	545.8237657087125	72.143	0.43854	72.143	71.989	72.428	0					25	15	2	0	0	0	0.2322	1	18364	18364		20.454	3.5113	1	157150			6148	2576	3135	3135	8554	8554					0.08824826979844147
DVGRVRYLL	9	Unmodified	_DVGRVRYLL_					0	0	0		nc|ENSG00000114626|Q969K4-4|ABTB1;ENSG00000114626|ENST00000232744|ABTB1;ENST00000493365.5_1_3:127391868-127394958:+|nuORF;ENST00000479280.5_1_3:127391883-127395444:+|nuORF	nc|ENSG00000114626|Q969K4-4|ABTB1	nc|ENSG00000114626|Q969K4-4|ABTB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	545.822015	1089.62948	0.67909	0.00037066	3.7608	0.0020527	4.4399	0.0024234	545.8238218581129	72.228	0.41888	72.201	72.038	72.457	-0.027275	0.011658	0.00018032	NaN	20.454	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145000			6149	2576	3135	3135							0.08824826979844147
DVHIQINSI	9	Unmodified	_DVHIQINSI_					0	0	0		ENSG00000189050|ENST00000305783|RNFT1;nc|ENSG00000189050|Q5M7Z0-2|RNFT1;ENST00000477207.2_1_17:58039882-58042045:-|nuORF;ENST00000586083.5_1_17:58037427-58042045:-|nuORF;nc|ENSG00000189050|Q5M7Z0-3|RNFT1	ENSG00000189050|ENST00000305783|RNFT1	ENSG00000189050|ENST00000305783|RNFT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.78271484375	2	519.782556	1037.55056	0.36998	0.00019231	0.28685	0.0001491	0.65683	0.00034141	519.7828016903057	55.478	1.075	55.478	54.917	55.992	0					92	38	3	0	0	0	2.0102E-16	2	13277	13225;13277		203.64	81.46	1	5212900			6150	7796	3136	3136	8555;8556	8556					0.033285549548736526
DVHIQINSI	9	Unmodified	_DVHIQINSI_					0	0	0		ENSG00000189050|ENST00000305783|RNFT1;nc|ENSG00000189050|Q5M7Z0-2|RNFT1;ENST00000477207.2_1_17:58039882-58042045:-|nuORF;ENST00000586083.5_1_17:58037427-58042045:-|nuORF;nc|ENSG00000189050|Q5M7Z0-3|RNFT1	ENSG00000189050|ENST00000305783|RNFT1	ENSG00000189050|ENST00000305783|RNFT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7828369140625	2	519.782556	1037.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.356	1	55.427	54.927	55.927	0.070885								0	0	0	4.0949000000000004E-33	1	13212	13212		218.2	83.903	1				6151	7796	3136	3136	8557	8557					0.033285549548736526
DVHIQINSI	9	Unmodified	_DVHIQINSI_					0	0	0		ENSG00000189050|ENST00000305783|RNFT1;nc|ENSG00000189050|Q5M7Z0-2|RNFT1;ENST00000477207.2_1_17:58039882-58042045:-|nuORF;ENST00000586083.5_1_17:58037427-58042045:-|nuORF;nc|ENSG00000189050|Q5M7Z0-3|RNFT1	ENSG00000189050|ENST00000305783|RNFT1	ENSG00000189050|ENST00000305783|RNFT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.78271484375	2	519.782556	1037.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.516	1	55.586	55.086	56.086	0.070885								0	0	0	5.4771000000000006E-24	1	13262	13262		189.73	67.552	1				6152	7796	3136	3136	8558	8558					0.033285549548736526
DVHIQINSI	9	Unmodified	_DVHIQINSI_					0	0	0		ENSG00000189050|ENST00000305783|RNFT1;nc|ENSG00000189050|Q5M7Z0-2|RNFT1;ENST00000477207.2_1_17:58039882-58042045:-|nuORF;ENST00000586083.5_1_17:58037427-58042045:-|nuORF;nc|ENSG00000189050|Q5M7Z0-3|RNFT1	ENSG00000189050|ENST00000305783|RNFT1	ENSG00000189050|ENST00000305783|RNFT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7833862304688	2	519.782556	1037.55056	0.37074	0.0001927	0.56118	0.00029169	0.93192	0.00048439	519.7829530921279	55.541	1.0808	55.522	55.052	56.133	-0.019081					87	39	3	0	0	0	2.0102E-16	2	13228	13228;13284		203.64	81.46	1	5758400			6153	7796	3136	3136	8559;8560	8559					0.033285549548736526
DVILAHSTVV	10	Unmodified	_DVILAHSTVV_					0	0	0			REV__ENST00000414193.2_1_X:100698832-100699039:-|nuORF	REV__ENST00000414193.2_1_X:100698832-100699039:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3016967773438	2	527.300581	1052.58661	0.914	0.00048195	1.3919	0.00073396	2.3059	0.0012159	527.301309025277	78.348	0.74415	78.348	78.005	78.749	0					41	27	2	0	0	0	0.31629	1	20248	20248		10.074	0	1	214700	+		6154	20797	3137	3137	8561	8561					0.06242012131770025
DVILAHSTVV	10	Unmodified	_DVILAHSTVV_					0	0	0			REV__ENST00000414193.2_1_X:100698832-100699039:-|nuORF	REV__ENST00000414193.2_1_X:100698832-100699039:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	527.300581	1052.58661	0.72579	0.00038271	1.4333	0.00075581	2.1591	0.0011385	527.3016213218547	78.252	0.62553	78.311	78.058	78.683	0.058151	-0.025779	8.7963E-05	NaN	24.021	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191350	+		6155	20797	3137	3137							0.06242012131770025
DVILAHSTVV	10	Unmodified	_DVILAHSTVV_					0	0	0			REV__ENST00000414193.2_1_X:100698832-100699039:-|nuORF	REV__ENST00000414193.2_1_X:100698832-100699039:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	527.300581	1052.58661	0.98244	0.00051804	1.2241	0.00064548	2.2066	0.0011635	527.3014133269245	78.381	0.68087	78.35	78.034	78.715	-0.030426	0.01414	-0.00013269	NaN	24.021	47	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223270	+		6156	20797	3137	3137							0.06242012131770025
DVILESTKF	9	Unmodified	_DVILESTKF_					0	0	0			REV__ENSG00000072041|ENST00000266682|SLC6A15	REV__ENSG00000072041|ENST00000266682|SLC6A15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.28662109375	2	526.28714	1050.55973	0.73133	0.00038489	-2.162	-0.0011378	-1.4307	-0.00075294	526.2856863702455	78.284	0.88352	78.342	78.115	78.999	0.058151					44	33	2	0	0	0	0.22935	1	20312	20312		19.362	1.2156	1	269500	+		6157	13750	3138	3138	8562	8562					0.03646903520575506
DVILESTKF	9	Unmodified	_DVILESTKF_					0	0	0			REV__ENSG00000072041|ENST00000266682|SLC6A15	REV__ENSG00000072041|ENST00000266682|SLC6A15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2866821289062	2	526.28714	1050.55973	0.73133	0.00038489	-2.162	-0.0011378	-1.4307	-0.00075294	526.2856863702455	78.284	0.88352	78.342	78.115	78.999	0.058151					44	33	2	0	0	0	0.16853	1	20254	20254		38.176	6.9072	1	269500	+		6158	13750	3138	3138	8563	8563					0.03646903520575506
DVILESTKF	9	Unmodified	_DVILESTKF_					0	0	0			REV__ENSG00000072041|ENST00000266682|SLC6A15	REV__ENSG00000072041|ENST00000266682|SLC6A15	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	526.28714	1050.55973	0.9563	0.00050329	-2.4121	-0.0012695	-1.4558	-0.00076618	526.2857404683871	78.408	0.74368	78.377	78.17	78.914	-0.030434	0.025559	-0.00019096	NaN	38.176	39	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263340	+		6159	13750	3138	3138							0.03646903520575506
DVIPPLTNI	9	Unmodified	_DVIPPLTNI_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2991027832031	2	491.2844	980.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.27	1	104.27	103.77	104.77	0								0	0	0	0.24715	1	27686	27686		7.2892	0.56607	1		+		6160	13344	3139	3139	8564	8564					0.06319224728747486
DVIPPLTNI	9	Unmodified	_DVIPPLTNI_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.29925537109375	2	491.2844	980.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.4	1	104.4	103.9	104.9	0								0	0	0	0.24715	1	27716	27716		7.2892	0.56607	1		+		6161	13344	3139	3139	8565	8565					0.06319224728747486
DVIPPLTNI	9	Unmodified	_DVIPPLTNI_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.2994079589844	2	491.2844	980.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.13	1	104.13	103.63	104.63	0.0018463								0	0	0	0.2489	1	27665	27665		6.7232	1.4925	1		+		6162	13344	3139	3139	8566	8566					0.06319224728747486
DVIRLLESL	9	Unmodified	_DVIRLLESL_					0	0	0		ENSG00000186106|ENST00000335659|ANKRD46;nc|ENSG00000186106|Q86W74-1|ANKRD46	ENSG00000186106|ENST00000335659|ANKRD46	ENSG00000186106|ENST00000335659|ANKRD46	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.750732421875	2	529.316232	1056.61791	0.9024	0.00047765	-0.94585	-0.00050066	-0.043453	-2.3001E-05	529.3158139201047	55.9	0.4875	55.881	55.646	56.133	-0.019081					31	17	2	0	0	0	0.25779	1	13303	13303		6.2058	5.0124	1	589940			6163	7590	3140	3140	8567	8567					0.09186585165844008
DVIRLLESL	9	Unmodified	_DVIRLLESL_					0	0	0		ENSG00000186106|ENST00000335659|ANKRD46;nc|ENSG00000186106|Q86W74-1|ANKRD46	ENSG00000186106|ENST00000335659|ANKRD46	ENSG00000186106|ENST00000335659|ANKRD46	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	529.316232	1056.61791	0.96428	0.00051041	-1.2296	-0.00065083	-0.26529	-0.00014042	529.3155710760668	55.838	0.53672	55.838	55.564	56.101	0	-0.008678	-0.0002903	NaN	6.2058	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	742500			6164	7590	3140	3140							0.09186585165844008
DVIRLLESL	9	Unmodified	_DVIRLLESL_					0	0	0		ENSG00000186106|ENST00000335659|ANKRD46;nc|ENSG00000186106|Q86W74-1|ANKRD46	ENSG00000186106|ENST00000335659|ANKRD46	ENSG00000186106|ENST00000335659|ANKRD46	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	529.316232	1056.61791	0.76027	0.00040242	-0.59411	-0.00031447	0.16615	8.7948E-05	529.3158772359136	55.75	0.48473	55.821	55.592	56.077	0.070889	-0.025645	0.00038242	NaN	6.2058	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	797830			6165	7590	3140	3140							0.09186585165844008
DVKAQTPLFT	10	Unmodified	_DVKAQTPLFT_					0	0	0		nc|ENSG00000198881|Q8WXK4|ASB12;ENSG00000198881|ENST00000362002|ASB12	nc|ENSG00000198881|Q8WXK4|ASB12	nc|ENSG00000198881|Q8WXK4|ASB12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.30712890625	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.96	1	100.96	100.46	101.46	0								0	0	0	0.37044	1	26940	26940		6.2058	0	1				6166	8149	3141	3141	8568	8568					0.04261994786179457
DVKAQTPLFT	10	Unmodified	_DVKAQTPLFT_					0	0	0		nc|ENSG00000198881|Q8WXK4|ASB12;ENSG00000198881|ENST00000362002|ASB12	nc|ENSG00000198881|Q8WXK4|ASB12	nc|ENSG00000198881|Q8WXK4|ASB12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3057250976562	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.374	1	93.461	92.961	93.961	0.08667								0	0	0	0.37044	1	24865	24865		6.2058	2.2614	1				6167	8149	3141	3141	8569	8569					0.04261994786179457
DVKATVAVLS	10	Unmodified	_DVKATVAVLS_					0	0	0		nc|ENSG00000140365|Q9H0A8-2|COMMD4;ENSG00000140365|ENST00000267935|COMMD4;nc|ENSG00000140365|Q9H0A8-3|COMMD4;ENST00000566843.1_1_15:75631276-75631720:+|nuORF;ENST00000568877.5_1_15:75630423-75631720:+|nuORF	nc|ENSG00000140365|Q9H0A8-2|COMMD4	nc|ENSG00000140365|Q9H0A8-2|COMMD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7846984863281	2	501.795132	1001.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.634	1	35.721	35.221	36.221	0.08625								0	0	0	0.32814	1	7149	7149		24.021	2.2739	1				6168	4296	3142	3142	8570	8570					0.07498609757453778
DVLEGFKKK	9	Unmodified	_DVLEGFKKK_					0	0	0		ENSG00000161849|ENST00000257951|KRT84;CON__Q9NSB2;CON__Q6ISB0	ENSG00000161849|ENST00000257951|KRT84	ENSG00000161849|ENST00000257951|KRT84	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3123168945312	2	532.310949	1062.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.21	1	113.19	112.69	113.69	-0.017303								0	0	0	0.26334	1	29429	29429		2.0598	0	1			+	6169	238	3143	3143	8571	8571					0.0785460251142922
DVLEGLNVL	9	Unmodified	_DVLEGLNVL_					0	0	0		nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4	nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000154310|Q9UKE5-8|TNIK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80072021484375	2	486.274032	970.533512	0.19112	9.2934E-05	0.85069	0.00041367	1.0418	0.0005066	486.2746131851655	42.45	0.56927	42.535	42.211	42.78	0.085201					41	20	3	0	0	0	0.25066	1	9198	9198		7.2892	0	1	603430			6170	5122;949	3144	3144	8572	8572					0.047066343491110274
DVLEKFLPF	9	Unmodified	_DVLEKFLPF_					0	0	0			REV__ENST00000341049.6_1_7:116199659-116199932:+|nuORF	REV__ENST00000341049.6_1_7:116199659-116199932:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.298828125	2	554.307875	1106.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.473	1	94.556	94.056	95.056	0.082779								0	0	0	0.24715	1	25201	25201		7.2892	0	1		+		6171	20114	3145	3145	8573	8573					0.0521608427989122
DVLGEFQKF	9	Unmodified	_DVLGEFQKF_					0	0	0			REV__ENSG00000126787|ENST00000247191|DLGAP5	REV__ENSG00000126787|ENST00000247191|DLGAP5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7981567382812	2	541.779482	1081.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.555	1	67.539	67.039	68.039	-0.016296								0	0	0	0.15265	1	16957	16957		34.102	0	1		+		6172	15323	3146	3146	8574	8574					0.0069003672338112665
DVLLQVETI	9	Unmodified	_DVLLQVETI_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2951049804688	2	515.294965	1028.57538	0.70106	0.00036125	-0.089568	-4.6154E-05	0.61149	0.0003151	515.2948445555783	78.381	1.3325	78.381	78.033	79.366	0					158	52	5	0	0	0	0.01251	3	20458	20212;20259;20458		75.571	31.798	1	5523800			6173	273	3147	3147	8575;8576;8577	8577					0.06223190037621862
DVLLQVETI	9	Unmodified	_DVLLQVETI_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.3099975585938	2	515.294965	1028.57538	0.65449	0.00033725	-0.041842	-2.1561E-05	0.61264	0.00031569	515.2948471521948	78.409	1.3081	78.378	78.062	79.37	-0.030434					166	52	5	0	0	0	0.015027	2	20264	20212;20264		71.708	31.469	1	4426500			6174	273	3147	3147	8578;8579	8579					0.06223190037621862
DVLMVKLKGF	10	Unmodified	_DVLMVKLKGF_					0	0	0		ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3522338867188	2	575.338652	1148.66275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.08	1	105.08	104.58	105.58	0.0011444								0	0	0	0.37581	1	27887	27887		3.9444	1.6417	1				6175	3172	3148	3148	8580	8580					0.09436692707527072
DVLWLSWWL	9	Unmodified	_DVLWLSWWL_					0	0	0		ENSG00000131409|ENST00000652263|LRRC4B	ENSG00000131409|ENST00000652263|LRRC4B	ENSG00000131409|ENST00000652263|LRRC4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.88037109375	3	406.54997	1216.62808	-0.047182	-1.9182E-05	-2.2679	-0.00092201	-2.3151	-0.00094119	406.5496360151338	24.578	0.28553	24.506	24.298	24.584	-0.072559					14	9	2	0	0	0	0.25811	1	3786	3786		2.9952	0	1	49028			6176	3563	3149	3149	8581	8581					0.028431928911004434
DVMLSASEKF	10	Unmodified	_DVMLSASEKF_					0	0	0			REV__nc|ENSG00000166278|P06681-3|C2	REV__nc|ENSG00000166278|P06681-3|C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.820068359375	2	563.776082	1125.53761	0.29724	0.00016758	-0.95178	-0.00053659	-0.65454	-0.00036902	563.7754159583674	26.585	0.61619	26.546	26.263	26.879	-0.038671					37	21	3	0	0	0	0.31889	1	4501	4501		6.2058	1.8765	1	203680	+		6177	17305	3150	3150	8582	8582					-0.02013644219505295
DVMVMCLL	8	Unmodified	_DVMVMCLL_					0	0	0		nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79;nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.8260192871094	2	462.223585	922.432617	0.00076007	3.5132E-07	0.10569	4.8851E-05	0.10645	4.9202E-05	462.22355800167355	66.883	0.39679	66.883	66.825	67.222	0					18	13	2	0	0	0	0.34185	1	16782	16782		10.183	0	1	159960			6178	3740	3151	3151	8583	8583					-0.03170180221263763
DVNFVPMIY	9	Unmodified	_DVNFVPMIY_					0	0	0			REV__nc|ENSG00000165078|Q8N4T0-2|CPA6	REV__nc|ENSG00000165078|Q8N4T0-2|CPA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2814331054688	2	549.270435	1096.52632	0.28533	0.00015672	-0.41778	-0.00022948	-0.13245	-7.2752E-05	549.2701484962043	60.349	0.81733	60.444	60.077	60.894	0.095093					49	29	2	0	0	0	0.24581	1	14827	14827		16.942	1.0951	1	1449000	+		6179	17205	3152	3152	8584	8584					-0.018084215229691836
DVPILQLLLM	10	Unmodified	_DVPILQLLLM_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.2743530273438	2	577.84631	1153.67807	0.42266	0.00024423	0.59299	0.00034266	1.0157	0.00058689	578.3482737911834	86.848	0.3638	86.848	86.703	87.067	0					22	13	2	0	0	0	0.31358	1	22859	22859		13.906	1.6654	1	136400			6180	4255	3153	3153	8585	8585					0.10737559504718774
DVPILQLLLM	10	Unmodified	_DVPILQLLLM_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2749633789062	2	577.84631	1153.67807	0.38352	0.00022162	0.32839	0.00018976	0.71192	0.00041138	577.8462148644775	86.802	0.35512	86.889	86.658	87.013	0.08709					25	14	2	0	0	0	0.31358	1	22887	22887		13.906	7.7003	1	119700			6181	4255	3153	3153	8586	8586					0.10737559504718774
DVPILQLLLM	10	Unmodified	_DVPILQLLLM_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.2742919921875	2	577.84631	1153.67807	0.40234	0.00023249	0.15802	9.1312E-05	0.56037	0.00032381	577.8462879604773	86.895	0.30666	86.889	86.747	87.054	-0.0056229					19	11	2	0	0	0	0.31358	1	22839	22839		13.906	0	1	180920			6182	4255	3153	3153	8587	8587					0.10737559504718774
DVPKALII	8	Unmodified	_DVPKALII_					0	0	0		ENSG00000119638|ENST00000238616|NEK9;ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF	ENSG00000119638|ENST00000238616|NEK9	ENSG00000119638|ENST00000238616|NEK9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.77862548828125	2	434.778754	867.542954	-0.090777	-3.9468E-05	0.27419	0.00011921	0.18341	7.9744E-05	434.7788385080815	58.904	0.55888	58.904	58.682	59.241	0					35	19	2	0	0	0	0.32038	1	14323	14323		28.487	5.3384	1	348340			6183	2890	3154	3154	8588	8588					0.10388447425293634
DVPKALII	8	Unmodified	_DVPKALII_					0	0	0		ENSG00000119638|ENST00000238616|NEK9;ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF	ENSG00000119638|ENST00000238616|NEK9	ENSG00000119638|ENST00000238616|NEK9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.77874755859375	2	434.778754	867.542954	0.03397	1.477E-05	0.3963	0.0001723	0.43027	0.00018707	434.77883509642055	58.781	0.84856	58.873	58.612	59.46	0.091301					44	29	2	0	0	0	0.32038	1	14302	14302		28.487	5.3384	1	284610			6184	2890	3154	3154	8589	8589					0.10388447425293634
DVPNIWQWTEK	11	Unmodified	_DVPNIWQWTEK_					0	0	0			REV__nc|ENSG00000096996|P42701-2|IL12RB1	REV__nc|ENSG00000096996|P42701-2|IL12RB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2766418457031	3	472.569981	1414.68811	0.027252	1.2879E-05	-0.33493	-0.00015828	-0.30767	-0.0001454	472.56999080015567	30.965	0.3848	30.993	30.81	31.194	0.027946					23	13	2	0	0	0	0.33207	1	5720	5720		5.5233	1.6774	1	215360	+		6185	14118	3155	3155	8590	8590					-0.002641612363504464
DVPNIWQWTEK	11	Unmodified	_DVPNIWQWTEK_					0	0	0			REV__nc|ENSG00000096996|P42701-2|IL12RB1	REV__nc|ENSG00000096996|P42701-2|IL12RB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2764892578125	3	472.569981	1414.68811	0.091575	4.3276E-05	-0.67293	-0.00031801	-0.58136	-0.00027473	472.90379152644726	30.868	0.35048	30.896	30.733	31.084	0.027157					21	12	2	0	0	0	0.33263	1	5718	5718		0.92553	0.80267	1	139180	+		6186	14118	3155	3155	8591	8591					-0.002641612363504464
DVPSEGKQFIK	11	Unmodified	_DVPSEGKQFIK_					0	0	0			REV__nc|ENSG00000143870|Q15084-3|PDIA6	REV__nc|ENSG00000143870|Q15084-3|PDIA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.90289306640625	3	416.559194	1246.65575	-0.12775	-5.3214E-05	-0.37506	-0.00015623	-0.5028	-0.00020945	416.55895393581375	17.884	0.87678	17.884	17.628	18.505	0					51	29	3	0	0	0	0.38765	1	1793	1793		12.856	1.3381	1	198150	+		6187	16208	3156	3156	8592	8592					0.042290513606758395
DVPSEGKQFIK	11	Unmodified	_DVPSEGKQFIK_					0	0	0			REV__nc|ENSG00000143870|Q15084-3|PDIA6	REV__nc|ENSG00000143870|Q15084-3|PDIA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9029846191406	3	416.559194	1246.65575	0.026959	1.123E-05	-1.6537	-0.00068886	-1.6267	-0.00067763	416.5584961501796	18.119	0.6635	18.002	17.694	18.358	-0.11739					46	22	4	0	0	0	0.39244	1	1840	1840		12.228	0.052842	1	214070	+		6188	16208	3156	3156	8593	8593					0.042290513606758395
DVPVDLIV	8	Unmodified	_DVPVDLIV_					0	0	0		ENST00000377242.7_1_10:20466301-20506418:+|nuORF	ENST00000377242.7_1_10:20466301-20506418:+|nuORF	ENST00000377242.7_1_10:20466301-20506418:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.25103759765625	2	435.252569	868.490584	0.0085562	3.7241E-06	-0.95196	-0.00041434	-0.94341	-0.00041062	435.2523014522076	70.842	4.4328	70.902	68.229	72.662	0.060783					310	160	3	0	0	0	0.4419	1	17794	17794		8.5933	2.8329	1	9492100			6189	9932	3157	3157	8594	8594					0.0510786429166501
DVPVSVRLL	9	Unmodified	_DVPVSVRLL_					0	0	0			REV__ENST00000296412.12_1_4:99993145-99993307:-|nuORF	REV__ENST00000296412.12_1_4:99993145-99993307:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2898864746094	2	499.305667	996.596781	0.38032	0.00018989	0.022564	1.1266E-05	0.40288	0.00020116	499.3055202721672	62.993	0.5087	62.993	62.832	63.34	0					29	18	2	0	0	0	0.25417	1	15538	15538		8.5933	0	1	222020	+		6190	19793	3158	3158	8595	8595					0.09834619856997051
DVQAKSHAK	9	Unmodified	_DVQAKSHAK_					0	0	0			REV__nc|ENSG00000205669|Q3I5F7-2|ACOT6	REV__nc|ENSG00000205669|Q3I5F7-2|ACOT6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.67401123046875	2	492.267073	982.519593	0.13453	6.6223E-05	0.26249	0.00012921	0.39702	0.00019544	492.2671249605752	15.011	0.32806	14.901	14.765	15.093	-0.10981					15	11	2	0	0	0	0.25706	1	941	941		6.7232	1.4925	1	66066	+		6191	18997	3159	3159	8596	8596					0.027634016406636874
DVQMVHPKF	9	Unmodified	_DVQMVHPKF_					0	0	0		nc|ENSG00000180481|Q4G1C9-4|GLIPR1L2;nc|ENSG00000180481|Q4G1C9-2|GLIPR1L2;nc|ENSG00000180481|Q4G1C9-6|GLIPR1L2;ENSG00000180481|ENST00000550916|GLIPR1L2	nc|ENSG00000180481|Q4G1C9-4|GLIPR1L2	nc|ENSG00000180481|Q4G1C9-4|GLIPR1L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3009643554688	2	550.781502	1099.54845	0.53943	0.00029711	-1.7746	-0.00097744	-1.2352	-0.00068033	550.7801906329076	72.574	0.94879	72.545	72.426	73.374	-0.029305					42	33	2	0	0	0	0.24289	1	18575	18575		18.146	1.2041	1	133090			6192	7189	3160	3160	8597	8597					0.0026580294545510696
DVREFKVAV	9	Unmodified	_DVREFKVAV_					0	0	0		ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000489586.6_1_1:236706790-236711458:+|nuORF;LGALS8|p.N283H|1|0.31|ENSG00000116977|chr1:236548054-236548054|A/C|missense_variant	ENSG00000116977|ENST00000366584|LGALS8	ENSG00000116977|ENST00000366584|LGALS8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2908325195312	2	531.800749	1061.58694	0.49786	0.00026476	1.1663	0.00062025	1.6642	0.00088501	531.8015074618054	43.828	0.33994	43.912	43.736	44.075	0.083992					19	12	2	0	0	0	0.25123	1	9679	9679		12.241	1.4167	1	415970			6193	2765	3161	3161	8598	8598					0.058614318515992636
DVRLQTSK	8	Unmodified	_DVRLQTSK_					0	0	0		ENST00000368134.6_1_6:130686353-130686434:-|nuORF	ENST00000368134.6_1_6:130686353-130686434:-|nuORF	ENST00000368134.6_1_6:130686353-130686434:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.21722412109375	2	473.769448	945.524344	-0.16951	-8.0308E-05	0.013265	6.2847E-06	-0.15624	-7.4024E-05	473.76932236675407	15.171	0.45321	15.171	15.044	15.498	0					23	15	2	0	0	0	0.34198	1	924	924		10.824	2.9138	1	133520			6194	9752	3162	3162	8599	8599					0.04940285783413856
DVRLQTSK	8	Unmodified	_DVRLQTSK_					0	0	0		ENST00000368134.6_1_6:130686353-130686434:-|nuORF	ENST00000368134.6_1_6:130686353-130686434:-|nuORF	ENST00000368134.6_1_6:130686353-130686434:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.21722412109375	2	473.769448	945.524344	0.0084713	4.0134E-06	0.068508	3.2457E-05	0.076979	3.647E-05	473.76933732055335	15.367	0.51048	15.258	15.038	15.549	-0.10981					29	17	2	0	0	0	0.34198	1	950	950		10.824	2.9138	1	128690			6195	9752	3162	3162	8600	8600					0.04940285783413856
DVRQQYESV	9	Unmodified	_DVRQQYESV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8051147460938	2	562.272552	1122.53055	0.57934	0.00032575	0.64372	0.00036195	1.2231	0.0006877	562.2727498937664	33.837	0.98817	33.837	33.512	34.5	0					81	35	4	0	0	0	0.24429	1	6706	6706		18.373	9.7798	1	1461700			6196	537	3163	3163	8601	8601					-0.025812407757030087
DVRQQYESV	9	Unmodified	_DVRQQYESV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8050537109375	2	562.272552	1122.53055	0.77919	0.00043812	0.012491	7.0236E-06	0.79168	0.00044514	562.2724009280886	33.644	1.1904	33.71	33.405	34.595	0.06636					100	42	4	0	0	0	0.21623	1	6640	6640		27.223	14.983	1	1572600			6197	537	3163	3163	8602	8602					-0.025812407757030087
DVRQQYESV	9	Unmodified	_DVRQQYESV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.804931640625	2	562.272552	1122.53055	0.10189	5.7291E-05	0.79077	0.00044463	0.89266	0.00050192	562.2728581252159	33.652	1.0795	33.719	33.415	34.495	0.066704					85	38	3	0	0	0	0.19888	1	6627	6627		32.037	17.632	1	1528000			6198	537	3163	3163	8603	8603					-0.025812407757030087
DVRSAMRLWN	10	Unmodified	_DVRSAMRLWN_					0	0	0			REV__ENST00000550872.1_1_16:89715668-89724092:-|nuORF	REV__ENST00000550872.1_1_16:89715668-89724092:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.91357421875	3	416.548635	1246.62407	0.10049	4.1859E-05	1.7935	0.00074709	1.894	0.00078895	416.54949641185135	20.821	0.54637	20.821	20.622	21.169	0					28	18	2	0	0	0	0.32132	1	2649	2649		0.62683	0	1	40331	+		6199	15502	3164	3164	8604	8604					0.010627801257442115
DVSFFPEQL	9	Unmodified	_DVSFFPEQL_					0	0	0			REV__ENST00000538217.1_1_12:66531852-66531906:-|nuORF	REV__ENST00000538217.1_1_12:66531852-66531906:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3069458007812	2	541.263665	1080.51278	0.34487	0.00018667	-0.53819	-0.0002913	-0.19332	-0.00010464	541.2630290453955	73.394	0.63243	73.394	73.081	73.713	0					33	22	2	0	0	0	0.2451	1	18789	18789		15.847	15.847	1	113880	+		6200	22100	3165	3165	8605	8605					-0.02425956030560883
DVSTKLHAI	9	Unmodified	_DVSTKLHAI_					0	0	0			REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.26727294921875	2	492.279649	982.544745	0.39517	0.00019453	-0.24907	-0.00012261	0.1461	7.1924E-05	492.2791924847242	21.626	0.90689	21.626	20.912	21.819	0					62	31	3	0	0	0	0.11461	1	2955	2955		36.127	10.728	1	168780	+		6201	15909	3166	3166	8606	8606					0.05277456443218398
DVSTKLHAI	9	Unmodified	_DVSTKLHAI_					0	0	0			REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2672424316406	2	492.279649	982.544745	0.48354	0.00023804	-0.085663	-4.217E-05	0.39788	0.00019587	492.2792074371322	21.623	0.81523	21.523	20.989	21.804	-0.10034					69	28	3	0	0	0	0.16283	1	2982	2982		29.082	9.8246	1	240160	+		6202	15909	3166	3166	8607	8607					0.05277456443218398
DVSTKLHAI	9	Unmodified	_DVSTKLHAI_					0	0	0			REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.26727294921875	2	492.279649	982.544745	0.34635	0.0001705	-0.017547	-8.638E-06	0.3288	0.00016186	492.27924246685194	21.621	0.87947	21.572	20.951	21.83	-0.049377					69	30	3	0	0	0	0.11461	1	2971	2971		36.127	10.728	1	201780	+		6203	15909	3166	3166	8608	8608					0.05277456443218398
DVSTKLHAI	9	Unmodified	_DVSTKLHAI_					0	0	0			REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	REV__nc|ENSG00000138180|Q53EZ4-2|CEP55	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	492.279649	982.544745	0.39517	0.00019453	-0.24907	-0.00012261	0.1461	7.1924E-05	492.2791924847242	21.626	0.90689	21.626	20.912	21.819	0	0.052512	-0.00010982	NaN	36.127	62	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168780	+		6204	15909	3166	3166							0.05277456443218398
DVSVKLKFLE	10	Unmodified	_DVSVKLKFLE_					0	0	0		nc|ENSG00000164144|P53367-3|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1;ARFIP1|p.K353Nfs*7|1|0.18|ENSG00000164144|chr4:152910152-152910152|T/-|frameshift_variant;ENSG00000164144|ENST00000353617|ARFIP1;ENST00000514499.1_1_4:153804397-153831368:+|nuORF	nc|ENSG00000164144|P53367-3|ARFIP1	nc|ENSG00000164144|P53367-3|ARFIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3428344726562	2	589.344989	1176.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.43	1	118.4	117.9	118.9	-0.024147								0	0	0	0.38187	1	30612	30612		1.3295	0.80477	1				6205	51	3167	3167	8609	8609					0.09415427371459373
DVTANLITV	9	Unmodified	_DVTANLITV_					0	0	0		ENSG00000173894|ENST00000310942|CBX2	ENSG00000173894|ENST00000310942|CBX2	ENSG00000173894|ENST00000310942|CBX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.2663879394531	2	473.266207	944.517862	0.2473	0.00011704	0.23669	0.00011202	0.48399	0.00022906	473.2661015983498	62.639	0.53341	62.63	62.327	62.86	-0.0085526					39	19	3	0	0	0	0.017549	1	15469	15469		67.838	6.2363	1	425910			6206	6759	3168	3168	8610	8610					0.043383478320379254
DVVQIRVPTPH	11	Unmodified	_DVVQIRVPTPH_					0	0	0			REV__ENSG00000175065|ENST00000308128|DSG4	REV__ENSG00000175065|ENST00000308128|DSG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.8962097167969	3	420.906816	1259.69862	0.20629	8.6827E-05	-0.87994	-0.00037037	-0.67366	-0.00028355	420.9066461284185	40.413	0.49234	40.512	40.173	40.666	0.099407					45	17	4	0	0	0	0.42346	1	8623	8623		4.1166	0.27072	1	784630	+		6207	17871	3169	3169	8611	8611					0.07915866208736588
DVVQIRVPTPH	11	Unmodified	_DVVQIRVPTPH_					0	0	0			REV__ENSG00000175065|ENST00000308128|DSG4	REV__ENSG00000175065|ENST00000308128|DSG4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	420.906816	1259.69862	-0.041925	-1.7647E-05	-0.8364	-0.00035205	-0.87833	-0.00036969	420.9067382469359	40.775	0.65236	40.775	40.473	41.125	0	0.15375	6.0417E-05	NaN	4.1166	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	544530	+		6208	17871	3169	3169							0.07915866208736588
DVVQIRVPTPH	11	Unmodified	_DVVQIRVPTPH_					0	0	0			REV__ENSG00000175065|ENST00000308128|DSG4	REV__ENSG00000175065|ENST00000308128|DSG4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	420.906816	1259.69862	0.23473	9.88E-05	-0.9267	-0.00039005	-0.69197	-0.00029125	420.9066449685311	40.484	0.48952	40.577	40.228	40.718	0.09267	-0.044471	-5.3605E-05	NaN	4.1166	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	593250	+		6209	17871	3169	3169							0.07915866208736588
DVVYNGRVF	9	Unmodified	_DVVYNGRVF_					0	0	0			REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.796142578125	2	534.777274	1067.53999	0.38706	0.00020699	-0.4389	-0.00023472	-0.051847	-2.7727E-05	535.2784726780811	51.213	0.74921	51.26	50.872	51.621	0.046574					61	27	3	0	0	0	0.2451	1	11901	11901		10.824	0	1	954670	+		6210	23210	3170	3170	8612	8612					0.008925723004722386
DVWETLDK	8	Unmodified	_DVWETLDK_					0	0	0			REV__nc|ENSG00000141316|Q8IXA5-2|SPACA3	REV__nc|ENSG00000141316|Q8IXA5-2|SPACA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.30133056640625	2	503.248015	1004.48148	0.25026	0.00012594	-3.1219	-0.0015711	-2.8716	-0.0014451	503.2464801243543	17.861	0.81868	17.861	17.424	18.243	0					40	27	2	0	0	0	0.29855	1	1768	1768		32.117	0	1	58451	+		6211	16069	3171	3171	8613	8613					-0.020585290646636167
DVYETIISI	9	Unmodified	_DVYETIISI_					0	0	0		nc|ENSG00000215421|Q9C0G0-3|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407;ENSG00000215421|ENST00000299687|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7793579101562	2	526.779148	1051.54374	0.72238	0.00038054	1.4772	0.00077818	2.1996	0.0011587	526.7789624608633	85.129	1.8029	85.129	84.346	86.149	0					131	67	4	0	0	0	0.0013036	3	22321	22295;22321;22417		118.89	64.121	1	932600			6212	8407	3172	3172	8614;8615;8616	8615					0.02003197283670488
DVYETIISI	9	Unmodified	_DVYETIISI_					0	0	0		nc|ENSG00000215421|Q9C0G0-3|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407;ENSG00000215421|ENST00000299687|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7794799804688	2	526.779148	1051.54374	0.65189	0.0003434	1.4504	0.00076406	2.1023	0.0011075	526.7789371165208	85.064	1.7627	85.145	84.369	86.132	0.080887					135	67	4	0	0	0	0.0018995	3	22285	22285;22332;22381		111.29	61.166	1	851940			6213	8407	3172	3172	8617;8618;8619	8617					0.02003197283670488
DVYETIISI	9	Unmodified	_DVYETIISI_					0	0	0		nc|ENSG00000215421|Q9C0G0-3|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407;ENSG00000215421|ENST00000299687|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7793579101562	2	526.779148	1051.54374	0.71483	0.00037656	1.6896	0.00089005	2.4044	0.0012666	526.7789910928458	85.103	1.8662	85.091	84.516	86.382	-0.01284					125	72	3	0	0	0	0.00033443	4	22350	22283;22300;22350;22398		131.27	67.031	1	913130			6214	8407	3172	3172	8620;8621;8622;8623	8622					0.02003197283670488
DVYFNRTIK	9	Unmodified	_DVYFNRTIK_					0	0	0			REV__ENSG00000267673|ENST00000393708|FDX2	REV__ENSG00000267673|ENST00000393708|FDX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7811889648438	2	578.31148	1154.60841	0.47843	0.00027668	0.27818	0.00016087	0.75661	0.00043756	578.3113834671179	33.687	0.91162	33.687	33.336	34.247	0					105	32	5	0	0	0	0.23749	1	6732	6732		20.415	9.5906	1	1108400	+		6215	19304	3173	3173	8624	8624					0.037288168803115695
DVYFNRTIK	9	Unmodified	_DVYFNRTIK_					0	0	0			REV__ENSG00000267673|ENST00000393708|FDX2	REV__ENSG00000267673|ENST00000393708|FDX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3236694335938	2	578.31148	1154.60841	0.62502	0.00036146	-0.061773	-3.5724E-05	0.56325	0.00032573	578.3112620245807	33.466	1.0789	33.533	33.266	34.344	0.06636					90	38	4	0	0	0	0.22215	1	6719	6719		20.415	2.2682	1	1336900	+		6216	19304	3173	3173	8625	8625					0.037288168803115695
DWEKIKAKIE	10	Unmodified	_DWEKIKAKIE_					0	0	0		nc|ENSG00000068885|Q9P2H3-2|IFT80;ENSG00000068885|ENST00000326448|IFT80;nc|ENSG00000068885|Q9P2H3-3|IFT80	nc|ENSG00000068885|Q9P2H3-2|IFT80	nc|ENSG00000068885|Q9P2H3-2|IFT80	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.2954711914062	2	630.353345	1258.69214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.157	1	12.06	11.56	12.56	-0.096607								0	0	0	0.38203	1	45	45		0.35063	0	1				6217	892	3174	3174	8626	8626					0.07313928257349289
DWFFNSQLR	9	Unmodified	_DWFFNSQLR_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2245178222656	3	404.864729	1211.57236	-0.32652	-0.0001322	2.9515	0.001195	2.625	0.0010628	404.86607804036777	17.839	0.29484	17.721	17.545	17.84	-0.11739					14	9	2	0	0	0	0.2615	1	1719	1719		2.4985	0.21571	1	26415			6218	6498	3175	3175	8627	8627					-0.024966402965446832
DWGNSCNI	8	Unmodified	_DWGNSCNI_					0	0	0		ENST00000357430.7_1_2:223752596-223765486:+|nuORF	ENST00000357430.7_1_2:223752596-223765486:+|nuORF	ENST00000357430.7_1_2:223752596-223765486:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.681884765625	2	454.681985	907.349416	0.14812	6.7345E-05	0.38934	0.00017702	0.53745	0.00024437	454.68210470724017	61.01	0.75824	61.107	60.807	61.566	0.096985					38	27	2	0	0	0	0.45169	1	14992	14992		5.2307	0.47466	1	1680800			6219	9633	3176	3176	8628	8628					-0.10796457353274036
DWHVSYCQF	9	Unmodified	_DWHVSYCQF_					0	0	0			REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.7454833984375	2	592.745116	1183.47568	0.40442	0.00023972	0.60128	0.00035641	1.0057	0.00059612	592.7453974288514	70.001	0.59053	70.001	69.787	70.378	0					64	21	5	0	0	0	0.31417	1	17710	17710		6.7232	6.7232	1	592860	+		6220	17225	3177	3177	8629	8629					-0.10871950847990774
DWHVSYCQF	9	Unmodified	_DWHVSYCQF_					0	0	0			REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.7454223632812	2	592.745116	1183.47568	0.36938	0.00021895	0.66264	0.00039278	1.032	0.00061173	592.7454348846737	69.96	0.58736	70.026	69.797	70.384	0.066048					58	20	4	0	0	0	0.26612	1	17693	17693		13.906	13.906	1	569980	+		6221	17225	3177	3177	8630	8630					-0.10871950847990774
DWHVSYCQF	9	Unmodified	_DWHVSYCQF_					0	0	0			REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.7454223632812	2	592.745116	1183.47568	0.39347	0.00023322	0.6776	0.00040164	1.0711	0.00063487	592.7454386473804	70.058	0.55226	70.036	69.804	70.356	-0.022087					62	19	5	0	0	0	0.31417	1	17717	17717		6.7232	0.51738	1	688510	+		6222	17225	3177	3177	8631	8631					-0.10871950847990774
DWHVSYCQF	9	Unmodified	_DWHVSYCQF_					0	0	0			REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	592.745116	1183.47568	0.36938	0.00021895	0.66264	0.00039278	1.032	0.00061173	592.7454348846737	69.96	0.58736	70.026	69.797	70.384	0.066048	0.0050608	1.5174E-05	NaN	13.906	58	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	569980	+		6223	17225	3177	3177							-0.10871950847990774
DWHVSYCQF	9	Unmodified	_DWHVSYCQF_					0	0	0			REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	592.745116	1183.47568	0.39347	0.00023322	0.6776	0.00040164	1.0711	0.00063487	592.7454386473804	70.058	0.55226	70.036	69.804	70.356	-0.022087	0.014846	3.2906E-05	NaN	13.906	62	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	688510	+		6224	17225	3177	3177							-0.10871950847990774
DWIVIIGTS	9	Unmodified	_DWIVIIGTS_					0	0	0			REV__ENSG00000198788|ENST00000675028|MUC2	REV__ENSG00000198788|ENST00000675028|MUC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2977294921875	2	502.276575	1002.5386	0.29328	0.00014731	-2.9824	-0.001498	-2.6892	-0.0013507	502.2745296446394	17.544	1.2911	17.544	16.925	18.216	0					110	44	5	0	0	0	0.28128	1	1632	1632		11.64	4.9171	1	994190	+		6225	18861	3178	3178	8632	8632					0.03742938211735236
DWKRVEKDVNK	11	Unmodified	_DWKRVEKDVNK_					0	0	0		ENSG00000069509|ENST00000378045|FUNDC1;ENST00000483115.1_1_X:44383446-44401387:-|nuORF	ENSG00000069509|ENST00000378045|FUNDC1	ENSG00000069509|ENST00000378045|FUNDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2915954589844	3	472.924647	1415.75211	0.075483	3.5698E-05	-0.54173	-0.0002562	-0.46625	-0.0002205	472.9243706053885	29.278	0.95637	29.292	28.789	29.745	0.013475					76	33	3	0	0	0	0.33303	1	5241	5241		1.1098	1.1098	1	436790			6226	907	3179	3179	8633	8633					0.06086618920608089
DWLVKHKEQPL	11	Unmodified	_DWLVKHKEQPL_					0	0	0			REV__nc|ENSG00000125875|Q96BZ9-2|TBC1D20	REV__nc|ENSG00000125875|Q96BZ9-2|TBC1D20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2742919921875	3	464.925988	1391.75613	-0.38111	-0.00017719	-0.8152	-0.00037901	-1.1963	-0.0005562	465.26025997847563	39.267	0.82027	39.267	38.903	39.723	0					43	29	2	0	0	0	0.45422	1	8294	8294		4.1166	0	1	224410	+		6227	22979	3180	3180	8634	8634					0.07592708414313165
DWSLKIPK	8	Unmodified	_DWSLKIPK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7872619628906	2	493.78711	985.559667	0.695	0.00034318	-0.15768	-7.7861E-05	0.53732	0.00026532	493.7869858477701	50.936	1.5886	50.936	49.976	51.565	0					136	58	3	0	0	0	0.22	4	11811	11762;11811;11865;11892		39.957	13.616	1	1328400			6228	3189	3181	3181	8635;8636;8637;8638	8636					0.06630948311214979
DWSLKIPK	8	Unmodified	_DWSLKIPK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7872619628906	2	493.78711	985.559667	0.75256	0.00037161	-0.28074	-0.00013863	0.47182	0.00023298	493.78697927714376	50.927	1.6883	50.973	49.933	51.621	0.046574					136	62	3	0	0	0	0.28696	2	11803	11675;11803		32.305	5.2372	1	1432900			6229	3189	3181	3181	8639;8640	8640					0.06630948311214979
DWSLKIPK	8	Unmodified	_DWSLKIPK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.787353515625	2	493.78711	985.559667	0.74698	0.00036885	-0.27565	-0.00013611	0.47133	0.00023274	493.7869665881724	50.991	1.6101	51.001	50.002	51.612	0.0095634					143	60	3	0	0	0	0.30157	2	11701	11701;11846		30.637	4.3684	1	1443300			6230	3189	3181	3181	8641;8642	8641					0.06630948311214979
DYAAIRDNYF	10	Unmodified	_DYAAIRDNYF_					0	0	0		ENSG00000144118|ENST00000272519|RALB;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB;RALA|p.Y153Ifs*27|1|0.13|ENSG00000006451|chr7:39696817-39696818|-/ATTATAAGGATAGCACAGAAAGT|frameshift_variant;ENSG00000006451|ENST00000005257|RALA	ENSG00000144118|ENST00000272519|RALB	ENSG00000144118|ENST00000272519|RALB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.2885131835938	2	624.288202	1246.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.74	1	58.725	58.225	59.225	-0.014267								0	0	0	0.33857	1	14255	14255		19.626	14.329	1				6231	4565	3182	3182	8643	8643					-0.05156667741630372
DYADLLQTF	9	Unmodified	_DYADLLQTF_					0	0	0		TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant;nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG	TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant	TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.260009765625	2	543.261122	1084.50769	0.62722	0.00034074	-3.0524	-0.0016582	-2.4252	-0.0013175	543.2598120616402	87.898	0.80036	87.898	87.439	88.239	0					41	37	2	0	0	0	0.10059	1	23215	23215		38.176	18.814	1	165220			6232	616	3183	3183	8644	8644					-0.03118259893199138
DYADLLQTF	9	Unmodified	_DYADLLQTF_					0	0	0		TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant;nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG	TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant	TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.26025390625	2	543.261122	1084.50769	0.61962	0.00033662	-2.3749	-0.0012902	-1.7552	-0.00095355	543.2599550157689	87.822	0.45704	87.912	87.666	88.123	0.089195					44	26	2	0	0	0	0.11201	1	23182	23182		36.506	13.848	1	128640			6233	616	3183	3183	8645	8645					-0.03118259893199138
DYADLLQTF	9	Unmodified	_DYADLLQTF_					0	0	0		TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant;nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG	TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant	TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2604370117188	2	543.261122	1084.50769	0.6722	0.00036518	-1.6974	-0.00092212	-1.0252	-0.00055694	543.2602715934423	87.939	0.65777	87.937	87.55	88.208	-0.0028458					47	35	2	0	0	0	0.12279	1	23208	23208		34.932	17.489	1	161770			6234	616	3183	3183	8646	8646					-0.03118259893199138
DYADLLQTF	9	Unmodified	_DYADLLQTF_					0	0	0		TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant;nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG	TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant	TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	543.261122	1084.50769	0.62274	0.00033831	-3.6052	-0.0019586	-2.9824	-0.0016202	543.7605175568503	88.082	0.067627	88.171	88.123	88.19	0.089203	0.16885	-0.0012968	NaN	38.176	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18489			6235	616	3183	3183							-0.03118259893199138
DYADLLQTF	9	Unmodified	_DYADLLQTF_					0	0	0		TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant;nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG	TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant	TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.261122	1084.50769	0.69153	0.00037568	-6.2626	-0.0034023	-5.5711	-0.0030266	543.2578149564207	87.535	0.067535	87.529	87.498	87.565	-0.0056152	-0.19118	-0.0037915	NaN	36.506	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28674			6236	616	3183	3183							-0.03118259893199138
DYAELLQHF	9	Unmodified	_DYAELLQHF_					0	0	0		ENSG00000103043|ENST00000261776|VAC14;ENST00000571759.1_1_16:70721833-70722010:-|nuORF;nc|ENSG00000103043|Q08AM6-2|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2745971679688	2	568.274564	1134.53457	0.3287	0.00018679	0.10298	5.8523E-05	0.43168	0.00024531	568.2744551013515	72.142	1.0818	72.142	71.827	72.909	0					111	39	5	0	0	0	9.4165E-24	1	18385	18385		231.73	142.77	1	3083700			6237	1802	3184	3184	8647	8647					-0.0273115128200061
DYAELLQHF	9	Unmodified	_DYAELLQHF_					0	0	0		ENSG00000103043|ENST00000261776|VAC14;ENST00000571759.1_1_16:70721833-70722010:-|nuORF;nc|ENSG00000103043|Q08AM6-2|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2747192382812	2	568.274564	1134.53457	0.51277	0.0002914	-0.020471	-1.1633E-05	0.4923	0.00027976	568.2743822896077	72.096	1.0585	72.152	71.868	72.926	0.056572					115	38	5	0	0	0	9.4165E-24	2	18365	18365;18379		231.73	135.44	1	3395400			6238	1802	3184	3184	8648;8649	8648					-0.0273115128200061
DYAELLQHF	9	Unmodified	_DYAELLQHF_					0	0	0		ENSG00000103043|ENST00000261776|VAC14;ENST00000571759.1_1_16:70721833-70722010:-|nuORF;nc|ENSG00000103043|Q08AM6-2|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2745361328125	2	568.274564	1134.53457	0.35185	0.00019995	0.17743	0.00010083	0.52929	0.00030078	568.2744787094643	72.216	1.055	72.188	71.901	72.956	-0.027275					111	37	5	0	0	0	9.9094E-17	1	18395	18395		215.27	130	1	3377700			6239	1802	3184	3184	8650	8650					-0.0273115128200061
DYAEVSNTF	9	Unmodified	_DYAEVSNTF_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7525024414062	2	523.227279	1044.44001	0.54164	0.0002834	-0.33477	-0.00017516	0.20687	0.00010824	523.2269950297836	55.605	0.67133	55.605	55.35	56.021	0					60	23	4	0	0	0	0.00013946	1	13316	13316		148.27	110.29	1	1223200			6240	7594	3185	3185	8651	8651					-0.08043709823982681
DYAEVSNTF	9	Unmodified	_DYAEVSNTF_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7525024414062	2	523.227279	1044.44001	0.66548	0.0003482	-0.22739	-0.00011897	0.4381	0.00022922	523.2270707684988	55.543	0.58519	55.614	55.347	55.932	0.070889					52	21	3	0	0	0	0.0032517	1	13297	13297		114.19	83.55	1	1402700			6241	7594	3185	3185	8652	8652					-0.08043709823982681
DYAEVSNTF	9	Unmodified	_DYAEVSNTF_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7507934570312	2	523.227279	1044.44001	0.64848	0.0003393	-1.5858	-0.00082976	-0.93736	-0.00049045	523.2264053508675	55.695	0.69921	55.676	55.408	56.107	-0.019081					57	25	3	0	0	0	0.075356	1	13358	13358		63.961	39.94	1	1269000			6242	7594	3185	3185	8653	8653					-0.08043709823982681
DYAKVLLLI	9	Unmodified	_DYAKVLLLI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7818603515625	2	524.326068	1046.63758	0.47624	0.0002497	-0.66484	-0.00034859	-0.1886	-9.8887E-05	524.325586353166	81.566	0.72177	81.566	81.302	82.024	0					81	30	4	0	0	0	0.11234	1	21295	21295		43.772	11.467	1	780390			6243	3320	3186	3186	8654	8654					0.11612961176638237
DYAKVLLLI	9	Unmodified	_DYAKVLLLI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7817993164062	2	524.326068	1046.63758	0.17117	8.9749E-05	-0.32805	-0.000172	-0.15688	-8.2255E-05	524.3257857273838	81.463	0.83942	81.532	81.247	82.086	0.068993					87	39	3	0	0	0	0.1335	1	21262	21262		47.594	13.193	1	745670			6244	3320	3186	3186	8655	8655					0.11612961176638237
DYAMIALLF	9	Unmodified	_DYAMIALLF_					0	0	0			REV__ENSG00000180475|ENST00000316770|OR10Q1	REV__ENSG00000180475|ENST00000316770|OR10Q1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.29443359375	2	528.775354	1055.53615	0.073111	3.8659E-05	3.1216	0.0016506	3.1947	0.0016893	529.2782551944391	12.951	0.14529	12.883	12.819	12.965	-0.067496					6	4	2	0	0	0	0.34374	1	284	284		2.3027	0.4585	1	10355	+		6245	18112	3187	3187	8656	8656					0.01060766482373765
DYAPLQQFF	9	Unmodified	_DYAPLQQFF_					0	0	0		nc|ENSG00000018189|Q7L099-2|RUFY3;nc|ENSG00000018189|Q7L099-4|RUFY3;ENSG00000018189|ENST00000381006|RUFY3;nc|ENSG00000018189|Q7L099|RUFY3	nc|ENSG00000018189|Q7L099-2|RUFY3	nc|ENSG00000018189|Q7L099-2|RUFY3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.7716674804688	2	564.771657	1127.52876	0.34172	0.00019299	0.33013	0.00018645	0.67184	0.00037944	564.7717416824437	88.184	0.71482	88.181	87.868	88.583	-0.0028458					90	36	3	0	0	0	0.0059482	1	23282	23282		85.642	53.336	1	783610			6246	491	3188	3188	8657	8657					-0.029902497936518557
DYAPLQQFF	9	Unmodified	_DYAPLQQFF_					0	0	0		nc|ENSG00000018189|Q7L099-2|RUFY3;nc|ENSG00000018189|Q7L099-4|RUFY3;ENSG00000018189|ENST00000381006|RUFY3;nc|ENSG00000018189|Q7L099|RUFY3	nc|ENSG00000018189|Q7L099-2|RUFY3	nc|ENSG00000018189|Q7L099-2|RUFY3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	564.771657	1127.52876	0.41803	0.00023609	0.24661	0.00013928	0.66464	0.00037537	564.7717334606191	88.156	0.73967	88.156	87.844	88.584	0	0.013648	-1.5518E-05	NaN	85.642	96	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	758950			6247	491	3188	3188							-0.029902497936518557
DYAPLQQFF	9	Unmodified	_DYAPLQQFF_					0	0	0		nc|ENSG00000018189|Q7L099-2|RUFY3;nc|ENSG00000018189|Q7L099-4|RUFY3;ENSG00000018189|ENST00000381006|RUFY3;nc|ENSG00000018189|Q7L099|RUFY3	nc|ENSG00000018189|Q7L099-2|RUFY3	nc|ENSG00000018189|Q7L099-2|RUFY3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.771657	1127.52876	0.4432	0.00025031	0.21186	0.00011965	0.65506	0.00036996	564.7716697599678	88.001	0.87983	88.09	87.766	88.646	0.089195	-0.052364	-5.477E-05	NaN	85.642	105	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	691920			6248	491	3188	3188							-0.029902497936518557
DYATIFNNL	9	Unmodified	_DYATIFNNL_					0	0	0		ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7615356445312	2	535.761289	1069.50803	0.60276	0.00032293	-0.44318	-0.00023744	0.15957	8.5494E-05	535.7612214650576	82.436	1.4029	82.436	82.024	83.427	0					133	52	4	0	0	0	3.0823E-17	3	21526	21480;21526;21574		223.06	134.16	1	2229000			6249	2581	3189	3189	8658;8659;8660	8659					-0.023948401733377978
DYATIFNNL	9	Unmodified	_DYATIFNNL_					0	0	0		ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7616577148438	2	535.761289	1069.50803	0.33975	0.00018203	-0.1079	-5.7806E-05	0.23186	0.00012422	535.7613674998237	82.337	1.2392	82.41	82.109	83.348	0.073097					83	48	2	0	0	0	3.0823E-17	3	21484	21443;21484;21529		223.06	134.16	1	3068600			6250	2581	3189	3189	8661;8662;8663	8662					-0.023948401733377978
DYATIFNNL	9	Unmodified	_DYATIFNNL_					0	0	0		ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7615966796875	2	535.761289	1069.50803	0.57692	0.00030909	-0.4643	-0.00024875	0.11262	6.0339E-05	535.7612598190385	82.477	1.4159	82.457	82.008	83.423	-0.020584					147	55	4	0	0	0	4.8523E-24	3	21514	21460;21514;21559		240.48	151.58	1	3232200			6251	2581	3189	3189	8664;8665;8666	8665					-0.023948401733377978
DYAVVLNQL	9	Unmodified	_DYAVVLNQL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7796630859375	2	517.779482	1033.54441	0.60263	0.00031203	-0.45883	-0.00023757	0.1438	7.4459E-05	517.7792634231183	74.93	1.14	74.93	74.654	75.794	0					101	40	4	0	0	0	6.1526E-05	2	19205	19205;19248		147.06	88.38	1	2028600			6252	619	3190	3190	8667;8668	8667					0.028980367233771176
DYAVVLNQL	9	Unmodified	_DYAVVLNQL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7796020507812	2	517.779482	1033.54441	0.32861	0.00017015	0.051229	2.6525E-05	0.37984	0.00019667	517.7793859458778	74.899	0.86754	74.952	74.64	75.508	0.052361					79	31	3	0	0	0	6.1526E-05	3	19229	19179;19229;19264		147.06	88.38	1	1932200			6253	619	3190	3190	8669;8670;8671	8670					0.028980367233771176
DYAVVLNQL	9	Unmodified	_DYAVVLNQL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7794189453125	2	517.779482	1033.54441	0.5751	0.00029777	-0.18145	-9.3952E-05	0.39365	0.00020382	517.779283702077	74.978	0.94054	74.947	74.672	75.612	-0.031479					87	34	3	0	0	0	6.1526E-05	3	19203	19203;19251;19286		147.06	88.38	1	2058800			6254	619	3190	3190	8672;8673;8674	8672					0.028980367233771176
DYAYCRYWWRR	11	Unmodified	_DYAYCRYWWRR_					0	0	0			REV__nc|ENSG00000104972|Q8NHL6|LILRB1	REV__nc|ENSG00000104972|Q8NHL6|LILRB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.26025390625	3	546.58586	1636.73575	0.32261	0.00017633	-0.95546	-0.00052224	-0.63286	-0.00034591	546.9196257948877	16.544	0.74186	16.544	15.947	16.689	0					54	25	3	0	0	0	0.33352	1	1254	1254		0	0	1	38711	+		6255	14432	3191	3191	8675	8675					-0.057147855171706397
DYAYCRYWWRR	11	Unmodified	_DYAYCRYWWRR_					0	0	0			REV__nc|ENSG00000104972|Q8NHL6|LILRB1	REV__nc|ENSG00000104972|Q8NHL6|LILRB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.5857543945312	3	546.58586	1636.73575	0.36227	0.00019801	-0.93136	-0.00050907	-0.56909	-0.00031106	546.585346682168	16.673	0.85282	16.559	15.95	16.803	-0.11434					43	29	2	0	0	0	0.48558	1	1370	1370		0	0	1	54165	+		6256	14432	3191	3191	8676	8676					-0.057147855171706397
DYAYCRYWWRR	11	Unmodified	_DYAYCRYWWRR_					0	0	0			REV__nc|ENSG00000104972|Q8NHL6|LILRB1	REV__nc|ENSG00000104972|Q8NHL6|LILRB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9083251953125	4	410.191214	1636.73575	-0.090224	-3.7009E-05	-1.0682	-0.00043817	-1.1584	-0.00047518	410.44148236132776	16.525	0.67458	16.411	16.075	16.749	-0.11434					31	23	2	0	0	0	0.33352	1	1425	1425		0	0	1	36570	+		6257	14432	3191	3191	8677	8677					-0.057147855171706397
DYAYCRYWWRR	11	Unmodified	_DYAYCRYWWRR_					0	0	0			REV__nc|ENSG00000104972|Q8NHL6|LILRB1	REV__nc|ENSG00000104972|Q8NHL6|LILRB1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	546.58586	1636.73575	0.36227	0.00019801	-0.93136	-0.00050907	-0.56909	-0.00031106	546.585346682168	16.673	0.85282	16.559	15.95	16.803	-0.11434	0.082363	-0.00017622	NaN	0	43	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54165	+		6258	14432	3191	3191							-0.057147855171706397
DYAYCRYWWRR	11	Unmodified	_DYAYCRYWWRR_					0	0	0			REV__nc|ENSG00000104972|Q8NHL6|LILRB1	REV__nc|ENSG00000104972|Q8NHL6|LILRB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	546.58586	1636.73575	0.48161	0.00026324	-0.55199	-0.00030171	-0.07038	-3.8469E-05	546.9199221055248	16.39	0.75334	16.327	15.892	16.646	-0.062534	-0.14947	0.00044584	NaN	0	45	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48770	+		6259	14432	3191	3191							-0.057147855171706397
DYAYLREHF	9	Unmodified	_DYAYLREHF_					0	0	0		ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.19268798828125	3	405.192734	1212.55637	0.058423	2.3673E-05	-0.18221	-7.3832E-05	-0.12379	-5.0159E-05	405.19263815480156	50.158	1.0793	50.158	49.843	50.922	0					93	39	4	0	0	0	0.048637	2	11636	11586;11636		42.835	24.972	1	1594700			6260	6224	3192	3192	8678;8679	8679					-0.041403465334497014
DYAYLREHF	9	Unmodified	_DYAYLREHF_					0	0	0		ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.28564453125	2	607.285463	1212.55637	0.57367	0.00034838	0.010362	6.2925E-06	0.58403	0.00035467	607.2853238172204	50.177	0.7001	50.177	49.923	50.623	0					53	25	3	0	0	0	0.003673	1	11616	11616		96.936	60.809	1	1125800			6261	6224	3192	3192	8680	8680					-0.041403465334497014
DYAYLREHF	9	Unmodified	_DYAYLREHF_					0	0	0		ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.1925354003906	3	405.192734	1212.55637	0.33619	0.00013622	-0.47279	-0.00019157	-0.13659	-5.5346E-05	405.19254949845146	50.138	0.83487	50.183	49.932	50.766	0.044891					86	30	4	0	0	0	0.048637	2	11598	11598;11648		42.835	27.097	1	1644400			6262	6224	3192	3192	8681;8682	8681					-0.041403465334497014
DYAYLREHF	9	Unmodified	_DYAYLREHF_					0	0	0		ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.2857055664062	2	607.285463	1212.55637	0.89988	0.00054648	-0.24251	-0.00014727	0.65736	0.00039921	607.2852044756999	50.158	0.69644	50.203	49.932	50.628	0.044891					62	25	4	0	0	0	0.00024732	2	11608	11608;11656		132.38	88.521	1	1092800			6263	6224	3192	3192	8683;8684	8683					-0.041403465334497014
DYAYLREHF	9	Unmodified	_DYAYLREHF_					0	0	0		ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.1926574707031	3	405.192734	1212.55637	0.41307	0.00016737	-0.54328	-0.00022013	-0.13021	-5.2761E-05	405.1925247057883	50.233	1.042	50.254	49.776	50.818	0.020691					98	38	4	0	0	0	0.064268	2	11623	11578;11623		37.771	22.033	1	1450300			6264	6224	3192	3192	8685;8686	8686					-0.041403465334497014
DYAYLREHF	9	Unmodified	_DYAYLREHF_					0	0	0		ENST00000565396.5_1_16:2050390-2052694:-|nuORF;nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	ENST00000565396.5_1_16:2050390-2052694:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.2858276367188	2	607.285463	1212.55637	0.81086	0.00049243	-0.21566	-0.00013097	0.5952	0.00036146	607.2852186182051	50.155	0.71902	50.175	49.939	50.658	0.020695					66	26	3	0	0	0	0.0019382	2	11637	11580;11637		110.79	74.666	1	859020			6265	6224	3192	3192	8687;8688	8688					-0.041403465334497014
DYCENYTIE	9	Unmodified	_DYCENYTIE_					0	0	0			REV__ENST00000466187.2_1_10:70105306-70105504:-|nuORF	REV__ENST00000466187.2_1_10:70105306-70105504:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7598876953125	2	575.223879	1148.43321	0.57634	0.00033152	-0.4348	-0.00025011	0.14153	8.1413E-05	575.7254247060398	78.657	0.15711	78.715	78.629	78.787	0.058151					6	5	2	0	0	0	0.25879	1	20351	20351		4.756	1.1595	1	25133	+		6266	21282	3193	3193	8689	8689					-0.13507390766881144
DYEEYWRAY	9	Unmodified	_DYEEYWRAY_					0	0	0		ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.8773498535156	3	432.184016	1293.53022	-0.229	-9.8971E-05	-1.4517	-0.00062739	-1.6807	-0.00072636	432.18306786368606	33.575	0.63691	33.642	33.358	33.995	0.066704					51	22	3	0	0	0	0.2615	1	6582	6582		2.4985	0.41248	1	207420			6267	795	3194	3194	8690	8690					-0.10480660495568372
DYEILTIP	8	Unmodified	_DYEILTIP_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7872009277344	2	482.255308	962.496064	0.54857	0.00026455	1.0511	0.00050689	1.5997	0.00077144	482.2558255293227	45.621	0.55141	45.621	45.366	45.917	0					29	19	2	0	0	0	0.33245	1	10160	10160		19.439	9.2556	1	162820			6268	1049	3195	3195	8691	8691					0.013315430834950348
DYEILTIP	8	Unmodified	_DYEILTIP_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.78717041015625	2	482.255308	962.496064	0.40641	0.00019599	1.1678	0.00056315	1.5742	0.00075915	482.25585024130675	45.417	0.55831	45.482	45.224	45.782	0.065048					35	20	2	0	0	0	0.33245	1	10149	10149		19.439	0	1	201990			6269	1049	3195	3195	8692	8692					0.013315430834950348
DYEMVELFL	9	Unmodified	_DYEMVELFL_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3114013671875	2	579.773008	1157.53146	0.23028	0.00013351	-1.3296	-0.00077087	-1.0993	-0.00063736	579.7721352770518	62.866	0.45846	62.857	62.646	63.104	-0.0085564					26	16	2	0	0	0	0.25622	1	15569	15569		7.2892	0.56607	1	183820			6270	401	3196	3196	8693	8693					-0.04100162451027245
DYEMVELFL	9	Unmodified	_DYEMVELFL_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	579.773008	1157.53146	0.28441	0.00016489	-2.4387	-0.0014139	-2.1542	-0.001249	579.771874240743	62.871	0.42847	62.871	62.689	63.117	0	0.0059422	-0.00072158	NaN	7.2892	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170820			6271	401	3196	3196							-0.04100162451027245
DYFDRIWN	8	Unmodified	_DYFDRIWN_					0	0	0			REV__ENSG00000137509|ENST00000313010|PRCP	REV__ENSG00000137509|ENST00000313010|PRCP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8209838867188	2	564.759081	1127.50361	0.47743	0.00026964	0.53005	0.00029935	1.0075	0.00056898	565.260342212116	78.916	1.2502	78.916	78.415	79.666	0					75	50	2	0	0	0	0.3366	1	20331	20331		12.532	2.381	1	443580	+		6272	15868	3197	3197	8694	8694					-0.055043045962293036
DYFNVLSYR	9	Unmodified	_DYFNVLSYR_					0	0	0		ENSG00000181847|ENST00000383671|TIGIT	ENSG00000181847|ENST00000383671|TIGIT	ENSG00000181847|ENST00000383671|TIGIT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.3078002929688	2	588.787838	1175.56112	0.29712	0.00017494	-0.55332	-0.00032579	-0.25621	-0.00015085	588.7878478888327	69.2	0.34464	69.179	69.061	69.405	-0.02034					15	11	2	0	0	0	0.22061	1	17478	17478		24.021	6.5779	1	129310			6273	7255	3198	3198	8695	8695					-0.019634623906540583
DYFRELNSF	9	Unmodified	_DYFRELNSF_					0	0	0		nc|ENSG00000186231|Q96NJ5-3|KLHL32	nc|ENSG00000186231|Q96NJ5-3|KLHL32	nc|ENSG00000186231|Q96NJ5-3|KLHL32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.7627563476562	2	595.77747	1189.54039	0.70347	0.00041911	-0.39869	-0.00023753	0.30478	0.00018158	595.7771525188164	58.607	0.47447	58.593	58.331	58.806	-0.014267					39	16	3	0	0	0	0.16283	1	14251	14251		29.082	5.061	1	763450			6274	12883	3199	3199	8696	8696					-0.046800527703453554
DYFTDPVSI	9	Unmodified	_DYFTDPVSI_					0	0	0		nc|ENSG00000146063|Q8WV44-4|TRIM41;ENST00000508930.1_1_5:180650987-180660460:+|nuORF;nc|ENSG00000146063|Q8WV44-2|TRIM41;ENSG00000146063|ENST00000315073|TRIM41	nc|ENSG00000146063|Q8WV44-4|TRIM41	nc|ENSG00000146063|Q8WV44-4|TRIM41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8137817382812	2	528.747847	1055.48114	0.9403	0.00049718	2.3356	0.0012349	3.2759	0.0017321	528.7489036329354	77.56	0.58177	77.528	77.287	77.869	-0.031334					31	20	2	0	0	0	0.2322	1	19998	19998		20.454	3.5113	1	89776			6275	4686	3200	3200	8697	8697					-0.04437948784516266
DYFVPLHHF	9	Unmodified	_DYFVPLHHF_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.83251953125	2	587.787641	1173.56073	0.41793	0.00024565	0.83782	0.00049246	1.2558	0.00073811	587.7880204690908	57.573	0.6811	57.573	57.246	57.927	0					50	24	3	0	0	0	0.12846	1	13932	13932		44.407	33.583	1	549410			6276	7767	3201	3201	8698	8698					-0.01910837319883285
DYFVPLHHF	9	Unmodified	_DYFVPLHHF_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.8323974609375	2	587.787641	1173.56073	0.32946	0.00019365	1.3045	0.0007668	1.634	0.00096045	587.7884887272457	57.377	0.70725	57.463	57.184	57.891	0.085621					37	25	2	0	0	0	0.1659	1	13879	13879		36.044	26.697	1	345310			6277	7767	3201	3201	8699	8699					-0.01910837319883285
DYFVPLHHF	9	Unmodified	_DYFVPLHHF_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.8320922851562	2	587.787641	1173.56073	0.23306	0.00013699	1.0835	0.00063685	1.3165	0.00077384	587.788157170137	57.612	0.56466	57.595	57.388	57.953	-0.0172					29	20	2	0	0	0	0.19839	1	13982	13982		28.487	14.581	1	505250			6278	7767	3201	3201	8700	8700					-0.01910837319883285
DYGATVAAFT	10	Unmodified	_DYGATVAAFT_					0	0	0			REV__ENSG00000075568|ENST00000186436|TMEM131	REV__ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7763977050781	2	508.24019	1014.46583	0.58346	0.00029654	-0.39164	-0.00019905	0.19181	9.7487E-05	508.2398870728173	54.859	0.67442	54.922	54.642	55.317	0.063202					36	24	2	0	0	0	0.27337	1	13040	13040		29.082	2.1979	1	689680	+		6279	13815	3202	3202	8701	8701					-0.0408281558170529
DYGEINQLL	9	Unmodified	_DYGEINQLL_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1;ENST00000520364.1_1_6:109309715-109314184:-|nuORF	nc|ENSG00000080546|Q9Y6P5-3|SESN1;ENST00000520364.1_1_6:109309715-109314184:-|nuORF	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7667846679688	2	532.766571	1063.51859	0.78859	0.00042014	-0.27531	-0.00014668	0.51328	0.00027346	532.7664105281509	74.819	0.55175	74.819	74.654	75.206	0					41	19	3	0	0	0	0.0046246	1	19216	19216		89.401	51.427	1	595030			6280	1158;11474	3203	3203	8702	8702					-0.010628575189002731
DYGEINQLL	9	Unmodified	_DYGEINQLL_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1;ENST00000520364.1_1_6:109309715-109314184:-|nuORF	nc|ENSG00000080546|Q9Y6P5-3|SESN1;ENST00000520364.1_1_6:109309715-109314184:-|nuORF	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.766845703125	2	532.766571	1063.51859	0.36743	0.00019576	-0.081608	-4.3478E-05	0.28583	0.00015228	532.7664949288774	74.835	0.65483	74.887	74.64	75.295	0.052368					51	23	3	0	0	0	0.0028542	1	19183	19183		103.42	65.244	1	637930			6281	1158;11474	3203	3203	8703	8703					-0.010628575189002731
DYGEINQLL	9	Unmodified	_DYGEINQLL_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1;ENST00000520364.1_1_6:109309715-109314184:-|nuORF	nc|ENSG00000080546|Q9Y6P5-3|SESN1;ENST00000520364.1_1_6:109309715-109314184:-|nuORF	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7665405273438	2	532.766571	1063.51859	0.76445	0.00040727	-0.18944	-0.00010093	0.575	0.00030634	532.7663039434259	74.912	0.72919	74.881	74.613	75.342	-0.031487					60	26	3	0	0	0	0.0079761	1	19195	19195		82.529	51.893	1	659190			6282	1158;11474	3203	3203	8704	8704					-0.010628575189002731
DYGIVADLF	9	Unmodified	_DYGIVADLF_					0	0	0		ENST00000560179.1_1_15:76508902-76518306:-|nuORF;nc|ENSG00000140374|P13804-2|ETFA;ENSG00000140374|ENST00000557943|ETFA	ENST00000560179.1_1_15:76508902-76518306:-|nuORF	ENST00000560179.1_1_15:76508902-76518306:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7529602050781	2	506.752933	1011.49131	0.17144	8.6879E-05	0.23251	0.00011782	0.40395	0.0002047	506.7528636196876	94.124	1.0859	94.124	93.755	94.841	0					234	91	4	0	0	0	0.0015545	4	25072	25034;25072;25112;25149		115.69	67.346	1	1052900			6283	4297	3204	3204	8705;8706;8707;8708	8706					-0.013973410592939217
DYGIVADLF	9	Unmodified	_DYGIVADLF_					0	0	0		ENST00000560179.1_1_15:76508902-76518306:-|nuORF;nc|ENSG00000140374|P13804-2|ETFA;ENSG00000140374|ENST00000557943|ETFA	ENST00000560179.1_1_15:76508902-76518306:-|nuORF	ENST00000560179.1_1_15:76508902-76518306:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7529296875	2	506.752933	1011.49131	0.22723	0.00011515	0.39342	0.00019937	0.62065	0.00031452	506.75284839969686	93.964	2.2844	94.051	93.119	95.403	0.08667					290	198	2	0	0	0	0.00012782	4	25032	24993;25032;25077;25116		136.33	81.56	1	2074800			6284	4297	3204	3204	8709;8710;8711;8712	8710					-0.013973410592939217
DYGIVADLF	9	Unmodified	_DYGIVADLF_					0	0	0		ENST00000560179.1_1_15:76508902-76518306:-|nuORF;nc|ENSG00000140374|P13804-2|ETFA;ENSG00000140374|ENST00000557943|ETFA	ENST00000560179.1_1_15:76508902-76518306:-|nuORF	ENST00000560179.1_1_15:76508902-76518306:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7529602050781	2	506.752933	1011.49131	0.40436	0.00020491	-0.12335	-6.2508E-05	0.28101	0.0001424	506.7527427548223	94.077	1.199	94.077	93.663	94.862	-0.00051117					235	96	4	0	0	0	4.3382E-05	3	25071	25030;25071;25113		149.99	92.523	1	1835900			6285	4297	3204	3204	8713;8714;8715	8714					-0.013973410592939217
DYHTKLFLI	9	Unmodified	_DYHTKLFLI_					0	0	0		nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16	nc|ENSG00000175221|Q9Y2X0-5|MED16	nc|ENSG00000175221|Q9Y2X0-5|MED16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.6895751953125	2	575.318774	1148.623	0.027165	1.5629E-05	0.085229	4.9034E-05	0.11239	6.4662E-05	575.3185342154418	61.347	0.4952	61.347	61.128	61.623	0					31	18	2	0	0	0	0.052436	1	15072	15072		74.2	48.8	1	956450			6286	6849	3205	3205	8716	8716					0.054628890284675435
DYHTKLFLI	9	Unmodified	_DYHTKLFLI_					0	0	0		nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16	nc|ENSG00000175221|Q9Y2X0-5|MED16	nc|ENSG00000175221|Q9Y2X0-5|MED16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.6892700195312	2	575.318774	1148.623	0.076647	4.4096E-05	0.073017	4.2008E-05	0.14966	8.6104E-05	575.3186294189719	61.252	0.46913	61.349	61.169	61.638	0.096985					38	17	3	0	0	0	0.036702	1	15042	15042		80.676	53.792	1	996680			6287	6849	3205	3205	8717	8717					0.054628890284675435
DYHTKLFLI	9	Unmodified	_DYHTKLFLI_					0	0	0		nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16	nc|ENSG00000175221|Q9Y2X0-5|MED16	nc|ENSG00000175221|Q9Y2X0-5|MED16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.6896362304688	2	575.318774	1148.623	0.027566	1.586E-05	0.26306	0.00015134	0.29062	0.0001672	575.3190866421247	61.305	0.47984	61.296	61.133	61.612	-0.0094528					45	17	4	0	0	0	0.052436	1	15049	15049		74.2	48.8	1	903410			6288	6849	3205	3205	8718	8718					0.054628890284675435
DYIFVILVIV	10	Unmodified	_DYIFVILVIV_					0	0	0			REV__nc|ENSG00000140090|Q8NFF2-2|SLC24A4	REV__nc|ENSG00000140090|Q8NFF2-2|SLC24A4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.3638916015625	2	597.36265	1192.71075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.325	1	91.326	90.826	91.826	0.00046539								0	0	0	0.37581	1	24236	24236		3.9444	0.3479	1		+		6289	16020	3206	3206	8719	8719					0.12210089899235754
DYIKFLRSI	9	Unmodified	_DYIKFLRSI_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3110961914062	2	577.832049	1153.64954	0.22895	0.0001323	-0.174	-0.00010054	0.054957	3.1756E-05	577.8319629079075	64.906	0.45309	64.906	64.647	65.1	0					42	16	3	0	0	0	0.24133	1	16196	16196		20.581	8.0494	1	550110			6290	2727	3207	3207	8720	8720					0.07886577919794036
DYIKFLRSI	9	Unmodified	_DYIKFLRSI_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.31103515625	2	577.832049	1153.64954	0.41039	0.00023714	-0.12307	-7.1115E-05	0.28732	0.00016602	577.8318552253256	64.773	0.53065	64.866	64.608	65.139	0.09288					46	19	3	0	0	0	0.22695	1	16157	16157		24.882	10.043	1	471200			6291	2727	3207	3207	8721	8721					0.07886577919794036
DYIKFLRSI	9	Unmodified	_DYIKFLRSI_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3112182617188	2	577.832049	1153.64954	0.15803	9.1315E-05	-0.20661	-0.00011939	-0.048581	-2.8072E-05	577.8318796069558	64.915	0.54149	64.903	64.606	65.148	-0.011337					43	19	3	0	0	0	0.24429	1	16198	16198		18.373	7.5492	1	618280			6292	2727	3207	3207	8722	8722					0.07886577919794036
DYIKRVPSI	9	Unmodified	_DYIKRVPSI_					0	0	0		THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant;ENSG00000125676|ENST00000245838|THOC2	THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.830810546875	2	545.816399	1089.61824	0.22915	0.00012507	0.52647	0.00028736	0.75562	0.00041243	545.8166806124378	42.607	0.62415	42.607	42.306	42.93	0					32	22	2	0	0	0	0.10812	2	9296	9244;9296		37.075	13.054	1	349790			6293	3222	3208	3208	8723;8724	8724					0.07702004885709357
DYIKRVPSI	9	Unmodified	_DYIKRVPSI_					0	0	0		THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant;ENSG00000125676|ENST00000245838|THOC2	THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8307495117188	2	545.816399	1089.61824	0.53581	0.00029245	0.44917	0.00024516	0.98498	0.00053762	545.8165751272097	42.381	0.56927	42.466	42.211	42.78	0.085197					33	20	2	0	0	0	0.18378	1	9232	9232		26.021	6.7637	1	396700			6294	3222	3208	3208	8725	8725					0.07702004885709357
DYIKRVPSI	9	Unmodified	_DYIKRVPSI_					0	0	0		THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant;ENSG00000125676|ENST00000245838|THOC2	THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8307495117188	2	545.816399	1089.61824	0.62476	0.000341	0.51219	0.00027956	1.1369	0.00062057	545.8166555388069	42.335	0.56575	42.427	42.067	42.633	0.091362					34	19	2	0	0	0	0.14306	1	9199	9199		32.037	11.584	1	422900			6295	3222	3208	3208	8726	8726					0.07702004885709357
DYILNVMKF	9	Oxidation (M)	_DYILNVM(Oxidation (M))KF_		DYILNVM(1)KF		DYILNVM(250)KF	0	0	1		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.797119140625	2	579.796817	1157.57908	0.50455	0.00029254	-0.14379	-8.3368E-05	0.36076	0.00020917	579.7967812982102	64.067	0.95584	64.067	63.771	64.727	0					101	34	5	0	0	0	2.6185000000000004E-25	3	15928	15847;15928;15982		249.29	167.4	1	5842200			6296	1286	3209	3209	8727;8728;8729	8728		154			0.006595365398197828
DYILNVMKF	9	Oxidation (M)	_DYILNVM(Oxidation (M))KF_		DYILNVM(1)KF		DYILNVM(210)KF	0	0	1		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.7970581054688	2	579.796817	1157.57908	0.45277	0.00026252	-0.084513	-4.9E-05	0.36826	0.00021352	579.7967807602481	63.972	0.98068	64.065	63.765	64.746	0.092884					104	35	5	0	0	0	1.7377E-16	2	15882	15882;15937		206.75	124.86	1	5460200			6297	1286	3209	3209	8730;8731	8730		154			0.006595365398197828
DYILNVMKF	9	Oxidation (M)	_DYILNVM(Oxidation (M))KF_		DYILNVM(1)KF		DYILNVM(190)KF	0	0	1		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.7970581054688	2	579.796817	1157.57908	0.51202	0.00029686	-0.23794	-0.00013796	0.27408	0.00015891	579.796740788843	64.086	0.95811	64.077	63.794	64.752	-0.0095291					96	34	4	0	0	0	3.6475E-11	3	15912	15835;15912;15965		191.38	117.25	1	5841500			6298	1286	3209	3209	8732;8733;8734	8733		154			0.006595365398197828
DYIPQLAKF	9	Unmodified	_DYIPQLAKF_					0	0	0		nc|ENSG00000115419|O94925-3|GLS;ENSG00000115419|ENST00000320717|GLS;ENST00000469774.1_1_2:191760380-191769916:+|nuORF	nc|ENSG00000115419|O94925-3|GLS	nc|ENSG00000115419|O94925-3|GLS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7979736328125	2	547.797675	1093.5808	0.66238	0.00036285	-0.5737	-0.00031427	0.088681	4.8579E-05	547.7974455545259	65.966	1.2486	65.966	65.66	66.909	0					68	44	2	0	0	0	0.1558	1	16533	16533		41.956	23.809	1	1728000			6299	2644	3210	3210	8735	8735					0.03774913620077314
DYIPQLAKF	9	Unmodified	_DYIPQLAKF_					0	0	0		nc|ENSG00000115419|O94925-3|GLS;ENSG00000115419|ENST00000320717|GLS;ENST00000469774.1_1_2:191760380-191769916:+|nuORF	nc|ENSG00000115419|O94925-3|GLS	nc|ENSG00000115419|O94925-3|GLS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7977905273438	2	547.797675	1093.5808	0.61415	0.00033643	-0.037537	-2.0563E-05	0.57661	0.00031586	547.7974484580793	65.981	0.82372	65.967	65.61	66.433	-0.013596					64	29	3	0	0	0	0.11018	1	16523	16523		45.74	21.719	1	1554600			6300	2644	3210	3210	8736	8736					0.03774913620077314
DYIPQLAKF	9	Unmodified	_DYIPQLAKF_					0	0	0		nc|ENSG00000115419|O94925-3|GLS;ENSG00000115419|ENST00000320717|GLS;ENST00000469774.1_1_2:191760380-191769916:+|nuORF	nc|ENSG00000115419|O94925-3|GLS	nc|ENSG00000115419|O94925-3|GLS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	547.797675	1093.5808	0.74939	0.00041051	-0.70395	-0.00038562	0.045437	2.489E-05	547.7974090778077	65.849	1.4473	65.938	65.604	67.051	0.088882	-0.018926	-0.00027523	NaN	45.74	111	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1534200			6301	2644	3210	3210							0.03774913620077314
DYIPYVFKL	9	Unmodified	_DYIPYVFKL_					0	0	0		ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.316162109375	2	579.3157	1156.61685	0.28432	0.00016471	-0.40711	-0.00023585	-0.12279	-7.1137E-05	579.3152364509241	79.731	0.54194	79.731	79.467	80.009	0					36	20	2	0	0	0	0.069366	1	20663	20663		45.7	33.459	1	352390			6302	1244	3211	3211	8737	8737					0.04480370796954958
DYIPYVFKL	9	Unmodified	_DYIPYVFKL_					0	0	0		ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.3153076171875	2	579.3157	1156.61685	0.36566	0.00021184	-0.77686	-0.00045005	-0.4112	-0.00023821	579.3144383821775	79.666	0.82407	79.727	79.201	80.025	0.061417					57	33	4	0	0	0	0.088443	1	20643	20643		39.95	24.701	1	373210			6303	1244	3211	3211	8738	8738					0.04480370796954958
DYIPYVFKL	9	Unmodified	_DYIPYVFKL_					0	0	0		ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.3161010742188	2	579.3157	1156.61685	0.33847	0.00019608	-0.67005	-0.00038817	-0.33158	-0.00019209	579.3150580006951	79.807	0.61316	79.778	79.471	80.084	-0.028923					46	22	3	0	0	0	0.074552	1	20683	20683		43.772	31.532	1	412010			6304	1244	3211	3211	8739	8739					0.04480370796954958
DYISPLLNF	9	Unmodified	_DYISPLLNF_					0	0	0		ENSG00000197217|ENST00000358689|ENTPD4;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENSG00000197217|ENST00000358689|ENTPD4	ENSG00000197217|ENST00000358689|ENTPD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2637329101562	2	541.281857	1080.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.729	1	94.729	94.229	95.229	0								0	0	0	0.22666	1	25273	25273		13.906	3.0821	1				6305	7944	3212	3212	8740	8740					0.012109208661513549
DYIVAFRP	8	Unmodified	_DYIVAFRP_					0	0	0		CNTN5|p.G808D|1|0.29|ENSG00000149972|chr11:100299199-100299199|G/A|missense_variant	CNTN5|p.G808D|1|0.29|ENSG00000149972|chr11:100299199-100299199|G/A|missense_variant	CNTN5|p.G808D|1|0.29|ENSG00000149972|chr11:100299199-100299199|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2629089355469	2	490.763635	979.512717	0.58296	0.0002861	0.040178	1.9718E-05	0.62314	0.00030581	490.76307192665763	78.593	0.42445	78.651	78.362	78.787	0.058151					27	15	2	0	0	0	0.34092	1	20327	20327		8.5933	0	1	101510			6306	191	3213	3213	8741	8741					0.022140887600926362
DYIVKIFDR	9	Unmodified	_DYIVKIFDR_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;ENST00000502389.1_1_4:39184171-39196284:+|nuORF;nc|ENSG00000157796|Q8NEZ3-2|WDR19	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2879638671875	2	584.821681	1167.62881	0.4369	0.00025551	-1.439	-0.00084153	-1.0021	-0.00058602	584.820563763333	58.41	0.46671	58.41	58.187	58.654	0					26	15	2	0	0	0	0.21389	1	14148	14148		19.257	5.3509	1	524040			6307	5325	3214	3214	8742	8742					0.05169987540148213
DYIVKIFDR	9	Unmodified	_DYIVKIFDR_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;ENST00000502389.1_1_4:39184171-39196284:+|nuORF;nc|ENSG00000157796|Q8NEZ3-2|WDR19	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2879638671875	2	584.821681	1167.62881	0.29592	0.00017306	-0.99219	-0.00058026	-0.69627	-0.0004072	584.8208545909071	58.197	0.3873	58.282	58.053	58.44	0.085621					30	13	3	0	0	0	0.22674	1	14097	14097		22.736	8.8302	1	478730			6308	5325	3214	3214	8743	8743					0.05169987540148213
DYIVKIFDR	9	Unmodified	_DYIVKIFDR_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;ENST00000502389.1_1_4:39184171-39196284:+|nuORF;nc|ENSG00000157796|Q8NEZ3-2|WDR19	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.2879028320312	2	584.821681	1167.62881	0.75493	0.0004415	-1.5411	-0.00090128	-0.78619	-0.00045978	584.820474831626	58.477	0.40585	58.463	58.25	58.656	-0.014267					32	14	3	0	0	0	0.20167	1	14177	14177		22.736	13.353	1	531900			6309	5325	3214	3214	8744	8744					0.05169987540148213
DYKCDHKEI	9	Unmodified	_DYKCDHKEI_					0	0	0			REV__nc|ENSG00000118257|O60462-6|NRP2	REV__nc|ENSG00000118257|O60462-6|NRP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8433227539062	2	575.763506	1149.51246	0.41087	0.00023656	-1.6583	-0.00095482	-1.2475	-0.00071825	576.2647102493322	88.072	0.43317	88.161	88	88.433	0.089203					31	21	2	0	0	0	0.25622	1	23261	23261		7.2892	0.56607	1	149450	+		6310	15005	3215	3215	8745	8745					-0.0563169902206937
DYKCDHKEI	9	Unmodified	_DYKCDHKEI_					0	0	0			REV__nc|ENSG00000118257|O60462-6|NRP2	REV__nc|ENSG00000118257|O60462-6|NRP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	575.763506	1149.51246	0.33987	0.00019569	-1.0779	-0.0006206	-0.738	-0.00042491	576.2649362068433	87.792	0.19279	87.789	87.619	87.812	-0.0028381	-0.18612	0.00048475	NaN	7.2892	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42672	+		6311	15005	3215	3215							-0.0563169902206937
DYKRLRAK	8	Unmodified	_DYKRLRAK_					0	0	0			REV__ENSG00000140876|ENST00000268533|NUDT7	REV__ENSG00000140876|ENST00000268533|NUDT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.774658203125	2	525.314358	1048.61416	0.48752	0.0002561	-0.31718	-0.00016662	0.17034	8.9484E-05	525.3140911441849	16.594	0.3229	16.532	16.351	16.674	-0.062534					17	10	2	0	0	0	0.34434	1	1401	1401		0.79363	0	1	51159	+		6312	16057	3216	3216	8746	8746					0.09179960182632385
DYLDMHYF	8	Unmodified	_DYLDMHYF_					0	0	0			REV__nc|ENSG00000186628|A1L4K1-2|FSD2	REV__nc|ENSG00000186628|A1L4K1-2|FSD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2573852539062	2	552.228768	1102.44298	0.37501	0.00020709	1.0481	0.00057878	1.4231	0.00078587	552.2300193077507	70.221	0.56421	70.221	69.895	70.46	0					42	20	3	0	0	0	0.34185	1	17856	17856		10.183	0	1	213580	+		6313	18454	3217	3217	8747	8747					-0.10414157970831184
DYLEHITSI	9	Unmodified	_DYLEHITSI_					0	0	0		ENSG00000099219|ENST00000339450|ERMP1;ENST00000214893.9_1_9:5823966-5832826:-|nuORF;ENST00000475005.1_1_9:5812814-5833063:-|nuORF	ENSG00000099219|ENST00000339450|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2926025390625	2	545.774396	1089.53424	0.31656	0.00017277	1.9919	0.0010871	2.3085	0.0012599	545.7745704881944	61.619	0.83136	61.619	61.307	62.138	0					64	30	3	0	0	0	0.13898	1	15215	15215		43.858	15.371	1	505870			6314	1478	3218	3218	8748	8748					-0.006945710018499085
DYLEKFYQL	9	Unmodified	_DYLEKFYQL_					0	0	0		ENST00000528662.6_1_11:102584081-102593757:-|nuORF;ENSG00000118113|ENST00000236826|MMP8	ENST00000528662.6_1_11:102584081-102593757:-|nuORF	ENST00000528662.6_1_11:102584081-102593757:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.8053588867188	2	609.805697	1217.59684	0.38351	0.00023387	-0.15588	-9.5059E-05	0.22763	0.00013881	609.805596506411	71.549	0.36823	71.522	71.262	71.63	-0.027275					23	12	3	0	0	0	0.0048951	1	18187	18187		87.258	35.628	1	481020			6315	2816	3219	3219	8749	8749					-0.003254249336578141
DYLEKFYQL	9	Unmodified	_DYLEKFYQL_					0	0	0		ENST00000528662.6_1_11:102584081-102593757:-|nuORF;ENSG00000118113|ENST00000236826|MMP8	ENST00000528662.6_1_11:102584081-102593757:-|nuORF	ENST00000528662.6_1_11:102584081-102593757:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	609.805697	1217.59684	0.41138	0.00025086	-0.17451	-0.00010642	0.23687	0.00014445	609.8051810924359	71.429	0.34879	71.429	71.233	71.582	0	-0.041527	-0.00014076	NaN	87.258	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379650			6316	2816	3219	3219							-0.003254249336578141
DYLEKFYQL	9	Unmodified	_DYLEKFYQL_					0	0	0		ENST00000528662.6_1_11:102584081-102593757:-|nuORF;ENSG00000118113|ENST00000236826|MMP8	ENST00000528662.6_1_11:102584081-102593757:-|nuORF	ENST00000528662.6_1_11:102584081-102593757:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	609.805697	1217.59684	0.3653	0.00022276	0.41788	0.00025483	0.78319	0.00047759	610.3077357361917	71.403	0.30689	71.461	71.208	71.515	0.05854	-0.0094027	0.00058173	NaN	87.258	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351020			6317	2816	3219	3219							-0.003254249336578141
DYLEKYYKF	9	Unmodified	_DYLEKYYKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.5448303222656	3	423.544773	1267.61249	-0.055963	-2.3703E-05	0.045926	1.9452E-05	-0.010038	-4.2515E-06	423.54510194912535	55.327	2.5506	55.327	54.974	57.525	0					260	93	6	0	0	0	2.973E-07	8	13194	13147;13194;13242;13294;13336;13382;13444;13649		142.92	100.08	1	37047000			6318	6107	3220	3220	8750;8751;8752;8753;8754;8755;8756;8757	8751					-0.010611384166168136
DYLEKYYKF	9	Unmodified	_DYLEKYYKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.8134155273438	2	634.813522	1267.61249	0.31753	0.00020157	0.060624	3.8485E-05	0.37816	0.00024006	634.8135039820883	55.334	1.1313	55.334	54.917	56.049	0					150	40	5	0	0	0	6.5985E-11	6	13155	13155;13203;13254;13308;13360;13410		181.69	181.69	1	22099000			6319	6107	3220	3220	8758;8759;8760;8761;8762;8763	8758					-0.010611384166168136
DYLEKYYKF	9	Unmodified	_DYLEKYYKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.5448303222656	3	423.544773	1267.61249	0.16283	6.8967E-05	-0.084419	-3.5755E-05	0.078415	3.3212E-05	423.5450321809987	55.238	1.5872	55.309	54.948	56.536	0.070885					237	58	6	0	0	0	2.973E-07	8	13252	13081;13106;13152;13199;13252;13296;13345;13397		142.92	100.08	1	38881000			6320	6107	3220	3220	8764;8765;8766;8767;8768;8769;8770;8771	8768					-0.010611384166168136
DYLEKYYKF	9	Unmodified	_DYLEKYYKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.813720703125	2	634.813522	1267.61249	0.69918	0.00044385	-0.26157	-0.00016605	0.43761	0.0002778	634.8133458195548	55.238	1.1058	55.309	54.971	56.077	0.070889					159	40	6	0	0	0	2.4074E-11	7	13263	13108;13115;13160;13209;13263;13313;13361		195.45	95.697	1	23034000			6321	6107	3220	3220	8772;8773;8774;8775;8776;8777;8778	8776					-0.010611384166168136
DYLEKYYKF	9	Unmodified	_DYLEKYYKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.5451354980469	3	423.544773	1267.61249	0.11597	4.912E-05	-0.11634	-4.9274E-05	-0.00036378	-1.5408E-07	423.545071518909	55.598	2.3439	55.579	55.209	57.553	-0.019081					278	85	6	0	0	0	2.973E-07	7	13281	13229;13281;13332;13384;13433;13479;13541		154.04	114.82	1	46708000			6322	6107	3220	3220	8779;8780;8781;8782;8783;8784;8785	8780					-0.010611384166168136
DYLEKYYKF	9	Unmodified	_DYLEKYYKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.813720703125	2	634.813522	1267.61249	0.664	0.00042152	-0.25626	-0.00016268	0.40774	0.00025884	634.8133403761104	55.597	1.6838	55.578	55.209	56.892	-0.019077					190	61	5	0	0	0	6.5985E-11	7	13333	13234;13282;13333;13385;13435;13497;13547		181.69	99.162	1	29036000			6323	6107	3220	3220	8786;8787;8788;8789;8790;8791;8792	8788					-0.010611384166168136
DYLEPSETCP	10	Unmodified	_DYLEPSETCP_					0	0	0			REV__nc|ENSG00000050130|Q9P055-3|JKAMP	REV__nc|ENSG00000050130|Q9P055-3|JKAMP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.2404174804688	2	577.239529	1152.46451	0.24312	0.00014034	1.4929	0.00086179	1.7361	0.0010021	577.24013737533	67.587	0.74911	67.587	67.193	67.942	0					87	25	6	0	0	0	0.3641	1	16960	16960		10.074	1.4806	1	1480400	+		6324	13561	3221	3221	8793	8793					-0.10562817732761687
DYLEVAKHF	9	Unmodified	_DYLEVAKHF_					0	0	0		ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7955932617188	2	561.284931	1120.55531	0.37555	0.00021079	-2.8275	-0.001587	-2.4519	-0.0013762	561.2833064983383	56.846	0.13206	56.846	56.744	56.876	0					7	4	2	0	0	0	0.20651	1	13647	13647		26.884	1.4843	1	110800			6325	3355	3222	3222	8794	8794					-0.00014560902332050318
DYLEVAKHF	9	Unmodified	_DYLEVAKHF_					0	0	0		ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2850952148438	2	561.284931	1120.55531	0.72997	0.00040972	-0.008607	-4.831E-06	0.72136	0.00040489	561.2850093057909	50.715	0.76468	50.715	50.407	51.172	0					83	27	4	0	0	0	0.0051609	1	11772	11772		92.653	61.385	1	2420400			6326	3355	3222	3222	8795	8795					-0.00014560902332050318
DYLEVAKHF	9	Unmodified	_DYLEVAKHF_					0	0	0		ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.284912109375	2	561.284931	1120.55531	0.78628	0.00044133	-0.14826	-8.3217E-05	0.63802	0.00035811	561.2849240059129	50.663	0.76446	50.708	50.403	51.167	0.044891					84	27	4	0	0	0	0.004681	1	11755	11755		88.954	62.686	1	2310100			6327	3355	3222	3222	8796	8796					-0.00014560902332050318
DYLEVAKHF	9	Unmodified	_DYLEVAKHF_					0	0	0		ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2850341796875	2	561.284931	1120.55531	0.68852	0.00038646	0.13594	7.6301E-05	0.82446	0.00046276	561.2851170852972	50.766	0.83768	50.775	50.484	51.321	0.0095673					89	31	4	0	0	0	0.004681	2	11768	11768;11814		88.954	59.872	1	2287000			6328	3355	3222	3222	8797;8798	8797					-0.00014560902332050318
DYLFKVVLI	9	Unmodified	_DYLFKVVLI_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.27880859375	2	555.333893	1108.65323	0.50354	0.00027964	-0.54578	-0.00030309	-0.042235	-2.3454E-05	555.3333644739295	86.353	0.62739	86.353	86.1	86.728	0					39	25	3	0	0	0	0.21538	1	22775	22775		26.268	16.194	1	188360			6329	1852	3223	3223	8799	8799					0.10325247693663187
DYLFKVVLI	9	Unmodified	_DYLFKVVLI_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.333984375	2	555.333893	1108.65323	0.4072	0.00022613	-0.099805	-5.5425E-05	0.30739	0.00017071	555.3337333757188	86.141	0.62045	86.225	86.082	86.702	0.084251					37	24	2	0	0	0	0.088443	1	22689	22689		39.95	27.418	1	145950			6330	1852	3223	3223	8800	8800					0.10325247693663187
DYLFKVVLI	9	Unmodified	_DYLFKVVLI_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	555.333893	1108.65323	0.42181	0.00023425	-0.22009	-0.00012222	0.20173	0.00011203	555.3336603920729	86.256	0.51154	86.247	85.99	86.501	-0.0090027	-0.028056	1.7154E-05	NaN	39.95	31	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137220			6331	1852	3223	3223							0.10325247693663187
DYLHLRLKR	9	Unmodified	_DYLHLRLKR_					0	0	0			REV__ENST00000511842.5_1_2:27693746-27712529:-|nuORF	REV__ENST00000511842.5_1_2:27693746-27712529:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.8126831054688	2	607.361839	1212.70913	0.51047	0.00031004	-1.2005	-0.00072915	-0.69005	-0.00041911	607.3611582985068	35.994	0.37595	36.081	35.844	36.22	0.08625					21	13	2	0	0	0	0.26145	1	7196	7196		2.0598	0	1	194270	+		6332	15895	3224	3224	8801	8801					0.1112789365381559
DYLKGLASF	9	Unmodified	_DYLKGLASF_					0	0	0		LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant;ENSG00000143669|ENST00000389793|LYST	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.26898193359375	2	507.26875	1012.52295	0.35678	0.00018098	0.50765	0.00025752	0.86443	0.0004385	507.2687343676482	65.652	0.84371	65.741	65.38	66.224	0.088882					47	30	2	0	0	0	0.16853	1	16396	16396		31.268	0	1	544460			6333	4540	3225	3225	8802	8802					0.017186516946708252
DYLKGLASF	9	Unmodified	_DYLKGLASF_					0	0	0		LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant;ENSG00000143669|ENST00000389793|LYST	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.26875	1012.52295	0.55896	0.00028354	0.48725	0.00024716	1.0462	0.0005307	507.26862535880883	65.888	0.72106	65.888	65.431	66.152	0	0.12358	-5.3326E-05	NaN	47.594	44	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	530940			6334	4540	3225	3225							0.017186516946708252
DYLKGLASF	9	Unmodified	_DYLKGLASF_					0	0	0		LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant;ENSG00000143669|ENST00000389793|LYST	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.26875	1012.52295	0.44134	0.00022388	0.64707	0.00032824	1.0884	0.00055212	507.26877105460034	65.675	0.83183	65.663	65.448	66.28	-0.01133	-0.10083	0.00010882	NaN	47.594	47	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	457000			6335	4540	3225	3225							0.017186516946708252
DYLKRFYLY	9	Unmodified	_DYLKRFYLY_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.8374633789062	2	640.837331	1279.66011	0.69653	0.00044636	-0.52572	-0.0003369	0.17081	0.00010946	640.8370304389832	60.838	1.0479	60.838	60.521	61.569	0					91	38	4	0	0	0	0.0008224	3	14906	14862;14906;14953		139.14	60.989	1	3948100			6336	4065	3226	3226	8803;8804;8805	8804					0.03146560574236901
DYLKRFYLY	9	Unmodified	_DYLKRFYLY_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.560546875	3	427.560646	1279.66011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.716	1	60.716	60.216	61.216	0								0	0	0	0.08786	1	14868	14868		49.527	10.912	1				6337	4065	3226	3226	8806	8806					0.03146560574236901
DYLKRFYLY	9	Unmodified	_DYLKRFYLY_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.8372192382812	2	640.837331	1279.66011	0.73676	0.00047214	-0.36931	-0.00023667	0.36745	0.00023547	640.8370717249635	60.801	0.92715	60.898	60.552	61.479	0.096985					85	33	5	0	0	0	5.4053E-05	3	14843	14843;14894;14941		166.45	81.176	1	4171500			6338	4065	3226	3226	8807;8808;8809	8807					0.03146560574236901
DYLKRFYLY	9	Unmodified	_DYLKRFYLY_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.560546875	3	427.560646	1279.66011	0.13915	5.9496E-05	-0.29272	-0.00012516	-0.15357	-6.566E-05	427.5604835610901	60.827	1.1763	60.924	60.552	61.729	0.096985					78	42	2	0	0	0	0.027957	1	14869	14869		61.09	22.475	1	5942100			6339	4065	3226	3226	8810	8810					0.03146560574236901
DYLKRFYLY	9	Unmodified	_DYLKRFYLY_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.83740234375	2	640.837331	1279.66011	0.76751	0.00049185	-0.42915	-0.00027501	0.33837	0.00021684	640.8370217430368	60.868	0.827	60.859	60.572	61.399	-0.0094566					87	30	5	0	0	0	0.00012746	3	14871	14871;14913;14963		152.41	67.14	1	6206500			6340	4065	3226	3226	8811;8812;8813	8811					0.03146560574236901
DYLKRFYLY	9	Unmodified	_DYLKRFYLY_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.560546875	3	427.560646	1279.66011	0.20908	8.9396E-05	-0.3823	-0.00016346	-0.17322	-7.4061E-05	427.56047043255813	60.873	1.2649	60.863	60.546	61.81	-0.0094566					72	46	2	0	0	0	0.016571	2	14890	14890;14938		69.338	30.723	1	6792600			6341	4065	3226	3226	8814;8815	8814					0.03146560574236901
DYLLIILLM	9	Unmodified	_DYLLIILLM_					0	0	0		ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.250244140625	2	553.830129	1105.6457	0.53465	0.0002961	-0.32055	-0.00017753	0.2141	0.00011857	553.8299493444493	85.687	0.96645	85.687	85.462	86.429	0					52	36	2	0	0	0	0.25526	1	22705	22705		7.9102	3.5809	1	181620			6342	5039	3227	3227	8816	8816					0.09710772101743714
DYLLIILLM	9	Unmodified	_DYLLIILLM_					0	0	0		ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.753173828125	2	553.830129	1105.6457	0.55039	0.00030482	-0.31454	-0.0001742	0.23585	0.00013062	553.8298466994731	84.649	2.1777	84.73	84.028	86.206	0.080887					140	84	2	0	0	0	0.25526	1	22639	22639		7.9102	3.5809	1	229240			6343	5039	3227	3227	8817	8817					0.09710772101743714
DYLNNVLTL	9	Unmodified	_DYLNNVLTL_					0	0	0		ENSG00000106025|ENST00000222747|TSPAN12	ENSG00000106025|ENST00000222747|TSPAN12	ENSG00000106025|ENST00000222747|TSPAN12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.784912109375	2	532.784764	1063.55498	0.73275	0.0003904	-0.46764	-0.00024915	0.26511	0.00014125	532.784542819189	84.516	0.68977	84.516	84.205	84.895	0					59	25	3	0	0	0	0.00024732	2	22133	22133;22187		132.38	56.159	1	692970			6344	2048	3228	3228	8818;8819	8818					0.025740193778119647
DYLNNVLTL	9	Unmodified	_DYLNNVLTL_					0	0	0		ENSG00000106025|ENST00000222747|TSPAN12	ENSG00000106025|ENST00000222747|TSPAN12	ENSG00000106025|ENST00000222747|TSPAN12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7847900390625	2	532.784764	1063.55498	0.58316	0.0003107	-0.44748	-0.00023841	0.13568	7.229E-05	532.7845697731617	84.427	0.89578	84.504	84.201	85.097	0.077095					61	35	3	0	0	0	0.0011116	2	22098	22098;22142		121.35	53.508	1	582170			6345	2048	3228	3228	8820;8821	8820					0.025740193778119647
DYLNNVLTL	9	Unmodified	_DYLNNVLTL_					0	0	0		ENSG00000106025|ENST00000222747|TSPAN12	ENSG00000106025|ENST00000222747|TSPAN12	ENSG00000106025|ENST00000222747|TSPAN12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7847290039062	2	532.784764	1063.55498	0.68197	0.00036335	0.10125	5.3943E-05	0.78322	0.00041729	532.7845014311757	84.463	0.83803	84.45	84.051	84.889	-0.01284					93	33	4	0	0	0	0.00051734	2	22143	22143;22194		128.93	66.36	1	730580			6346	2048	3228	3228	8822;8823	8822					0.025740193778119647
DYLPPPYML	9	Unmodified	_DYLPPPYML_					0	0	0			REV__ENSG00000109511|ENST00000359299|ANXA10	REV__ENSG00000109511|ENST00000359299|ANXA10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.805419921875	2	554.772811	1107.53107	0.56296	0.00031232	4.3149	0.0023938	4.8779	0.0027061	554.7750151409195	54.693	0.5093	54.677	54.415	54.924	-0.015923					24	17	2	0	0	0	0.18943	1	12966	12966		30.225	9.3536	1	227030	+		6347	14642	3229	3229	8824	8824					-0.01839537380215006
DYLSFAWEL	9	Unmodified	_DYLSFAWEL_					0	0	0			REV__ENSG00000109047|ENST00000226193|RCVRN	REV__ENSG00000109047|ENST00000226193|RCVRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2715454101562	2	572.27149	1142.52843	0.65715	0.00037607	-0.45664	-0.00026132	0.2005	0.00011474	572.2711431823329	77.885	1.3315	77.885	77.47	78.802	0					75	49	2	0	0	0	0.21303	1	20091	20091		21.747	2.4897	1	1306300	+		6348	14622	3230	3230	8825	8825					-0.03713669513535933
DYLSFAWEL	9	Unmodified	_DYLSFAWEL_					0	0	0			REV__ENSG00000109047|ENST00000226193|RCVRN	REV__ENSG00000109047|ENST00000226193|RCVRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.271484375	2	572.27149	1142.52843	0.70935	0.00040594	-0.44251	-0.00025324	0.26684	0.00015271	572.2712237160998	77.802	1.5156	77.858	77.571	79.086	0.05542					85	57	2	0	0	0	0.21303	1	20119	20119		21.747	5.8995	1	1202800	+		6349	14622	3230	3230	8826	8826					-0.03713669513535933
DYLSFAWEL	9	Unmodified	_DYLSFAWEL_					0	0	0			REV__ENSG00000109047|ENST00000226193|RCVRN	REV__ENSG00000109047|ENST00000226193|RCVRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2714233398438	2	572.27149	1142.52843	0.75557	0.00043239	-0.49623	-0.00028398	0.25934	0.00014842	572.2711592394251	77.874	1.4695	77.843	77.482	78.952	-0.031334					93	55	2	0	0	0	0.22596	1	20120	20120		21.747	2.4897	1	1409400	+		6350	14622	3230	3230	8827	8827					-0.03713669513535933
DYLSFGYVYVG	11	Unmodified	_DYLSFGYVYVG_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2043151855469	3	428.204528	1281.59175	0.14841	6.3551E-05	-0.095177	-4.0755E-05	0.053235	2.2796E-05	428.204241958303	55.249	0.61467	55.319	55.113	55.727	0.070889					54	22	4	0	0	0	0.35571	1	13158	13158		17.049	0.4827	1	665120			6351	2705	3231	3231	8828	8828					-0.037777287962853734
DYLTRVYEL	9	Unmodified	_DYLTRVYEL_					0	0	0			REV__ENSG00000099942|ENST00000354336|CRKL	REV__ENSG00000099942|ENST00000354336|CRKL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8303833007812	2	586.303321	1170.59209	0.33435	0.00019603	-3.3784	-0.0019808	-3.0441	-0.0017847	586.3008851303384	30.097	0.28551	30.125	29.933	30.218	0.027946					15	9	2	0	0	0	0.24848	1	5470	5470		13.906	2.2658	1	98999	+		6352	14143	3232	3232	8829	8829					0.01361690923590686
DYLVKLKSL	9	Unmodified	_DYLVKLKSL_					0	0	0		nc|ENSG00000171509|Q9HBX9-5|RXFP1;nc|ENSG00000171509|Q9HBX9-2|RXFP1;ENSG00000171509|ENST00000307765|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.266845703125	2	539.828975	1077.6434	0.5754	0.00031062	0.019349	1.0445E-05	0.59475	0.00032106	539.8290810916745	68.149	0.20905	68.129	68.014	68.223	-0.019157					12	7	2	0	0	0	0.24688	1	17154	17154		14.838	2.5976	1	88869			6353	6554	3233	3233	8830	8830					0.10768059688280118
DYMKEVGVGF	10	Unmodified	_DYMKEVGVGF_					0	0	0		ENSG00000170323|ENST00000256104|FABP4	ENSG00000170323|ENST00000256104|FABP4	ENSG00000170323|ENST00000256104|FABP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.8071899414062	2	572.7708	1143.52705	0.21397	0.00012256	0.29215	0.00016733	0.50611	0.00028989	572.7709546256094	49.961	0.39862	49.961	49.793	50.191	0					22	14	2	0	0	0	0.27337	1	11538	11538		22.736	0	1	357130			6354	6442	3234	3234	8831	8831					-0.03897626873913396
DYMKTTSNF	9	Oxidation (M)	_DYM(Oxidation (M))KTTSNF_		DYM(1)KTTSNF		DYM(170)KTTSNF	0	0	1		nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-4|NEMF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7423095703125	2	561.742239	1121.46993	0.39273	0.00022061	-0.52625	-0.00029562	-0.13352	-7.5005E-05	561.7418978636018	30.042	1.2325	30.042	29.686	30.918	0					126	43	5	0	0	0	2.2231E-07	5	5418	5418;5461;5513;5566;5618		171.46	142.98	1	3795600			6355	5972	3235	3235	8832;8833;8834;8835;8836	8832		703			-0.08595094150291516
DYMKTTSNF	9	Oxidation (M)	_DYM(Oxidation (M))KTTSNF_		DYM(1)KTTSNF		DYM(170)KTTSNF	0	0	1		nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-4|NEMF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7420654296875	2	561.742239	1121.46993	-0.031473	-1.768E-05	-0.13078	-7.3462E-05	-0.16225	-9.1142E-05	561.7420724961871	30.052	1.1087	30.079	29.728	30.836	0.027157					107	38	4	0	0	0	2.2231E-07	4	5409	5409;5456;5509;5586		171.46	142.98	1	3686600			6356	5972	3235	3235	8837;8838;8839;8840	8837		703			-0.08595094150291516
DYMKTTSNF	9	Oxidation (M)	_DYM(Oxidation (M))KTTSNF_					0	0	1		nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-4|NEMF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.742239	1121.46993	0.41649	0.00023396	-0.58369	-0.00032789	-0.1672	-9.3924E-05	561.7418537098159	30.043	1.3365	30.061	29.691	31.027	0.01811	0.00056096	-0.00013413	NaN	171.46	123	46	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3575800			6357	5972	3235	3235				703			-0.08595094150291516
DYMTSPARL	9	Oxidation (M)	_DYM(Oxidation (M))TSPARL_		DYM(1)TSPARL		DYM(62)TSPARL	0	0	1		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.3449096679688	2	535.252774	1068.491	0.59161	0.00031666	1.2206	0.00065333	1.8122	0.00096999	535.253437815678	36.302	1.0641	36.302	35.635	36.7	0					53	38	2	0	0	0	0.082647	1	7369	7369		61.602	34.718	1	411130			6358	3994	3236	3236	8841	8841		502			-0.040510840507977264
DYMTSPARL	9	Oxidation (M)	_DYM(Oxidation (M))TSPARL_		DYM(1)TSPARL		DYM(68)TSPARL	0	0	1		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.3443603515625	2	535.252774	1068.491	0.4755	0.00025451	0.80576	0.00043128	1.2813	0.0006858	535.2531613217453	36.121	0.74047	36.203	35.849	36.59	0.082355					38	26	2	0	0	0	0.044188	1	7290	7290		67.838	35.052	1	451490			6359	3994	3236	3236	8842	8842		502			-0.040510840507977264
DYMTSPARL	9	Oxidation (M)	_DYM(Oxidation (M))TSPARL_		DYM(1)TSPARL		DYM(58)TSPARL	0	0	1		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.2525634765625	2	535.252774	1068.491	0.70141	0.00037543	1.4231	0.00076171	2.1245	0.0011371	535.2534101073966	36.081	0.96405	36.167	35.597	36.561	0.08625					47	34	2	0	0	0	0.090256	1	7279	7279		57.722	33.701	1	465970			6360	3994	3236	3236	8843	8843		502			-0.040510840507977264
DYMVLAAHF	9	Oxidation (M)	_DYM(Oxidation (M))VLAAHF_		DYM(1)VLAAHF		DYM(150)VLAAHF	0	0	1		ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant;ENSG00000166716|ENST00000560079|ZNF592	ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.75146484375	2	541.75241	1081.49027	0.49955	0.00027063	-1.9378	-0.0010498	-1.4383	-0.0007792	541.7511395382767	60.438	0.59007	60.438	60.202	60.792	0					40	21	2	0	0	0	2.3185E-05	1	14767	14767		153.26	117.14	1	1047300			6361	6104	3237	3237	8844	8844		714			-0.04721878699865556
DYMVLAAHF	9	Oxidation (M)	_DYM(Oxidation (M))VLAAHF_		DYM(1)VLAAHF		DYM(97)VLAAHF	0	0	1		ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant;ENSG00000166716|ENST00000560079|ZNF592	ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7520141601562	2	541.75241	1081.49027	0.34288	0.00018576	-1.8617	-0.0010086	-1.5189	-0.00082285	541.7512754883983	60.298	0.59431	60.393	60.155	60.75	0.095089					49	21	4	0	0	0	0.0036555	1	14800	14800		97.075	79.962	1	941130			6362	6104	3237	3237	8845	8845		714			-0.04721878699865556
DYNFVFTSF	9	Unmodified	_DYNFVFTSF_					0	0	0		ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1	ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.2557983398438	2	570.25584	1138.49713	0.16348	9.3224E-05	0.017653	1.0067E-05	0.18113	0.00010329	570.2558222745319	92.794	1.4419	92.794	92.415	93.857	0					390	120	5	0	0	0	8.7734E-17	7	24664	24625;24649;24664;24703;24741;24780;24841		216.57	173.69	1	4157300			6363	3111	3238	3238	8846;8847;8848;8849;8850;8851;8852	8848					-0.06658242547609916
DYNFVFTSF	9	Unmodified	_DYNFVFTSF_					0	0	0		ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1	ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2559814453125	2	570.25584	1138.49713	0.33647	0.00019187	-0.17722	-0.00010106	0.15925	9.0815E-05	570.2557284247056	92.672	1.3782	92.761	92.407	93.785	0.089195					367	112	5	0	0	0	8.7734E-17	6	24632	24591;24632;24671;24710;24749;24805		216.57	172.71	1	5402600			6364	3111	3238	3238	8853;8854;8855;8856;8857;8858	8854					-0.06658242547609916
DYNFVFTSF	9	Unmodified	_DYNFVFTSF_					0	0	0		ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1	ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.2560424804688	2	570.25584	1138.49713	0.39612	0.00022589	-0.17284	-9.8565E-05	0.22328	0.00012732	570.255756158809	92.783	1.8554	92.784	92.418	94.273	0.00047302					409	147	5	0	0	0	8.7734E-17	6	24676	24630;24676;24718;24757;24794;24847		216.57	161.79	1	7213100			6365	3111	3238	3238	8859;8860;8861;8862;8863;8864	8860					-0.06658242547609916
DYPNRLLYF	9	Unmodified	_DYPNRLLYF_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.792724609375	2	600.806031	1199.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.061	1	70.061	69.561	70.561	0								0	0	0	0.21673	1	17737	17737		17.113	5.4726	1				6366	1183	3239	3239	8865	8865					0.005694145060488154
DYPNRLLYF	9	Unmodified	_DYPNRLLYF_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.7916259765625	2	600.806031	1199.59751	0.34077	0.00020474	0.31603	0.00018988	0.65681	0.00039461	600.8061869166324	69.902	0.5439	69.88	69.673	70.217	-0.022079					34	19	2	0	0	0	0.20626	1	17729	17729		22.736	6.8891	1	366570			6367	1183	3239	3239	8866	8866					0.005694145060488154
DYPPNYILF	9	Unmodified	_DYPPNYILF_					0	0	0		ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7463989257812	2	571.281857	1140.54916	0.70502	0.00040277	-3.5199	-0.0020109	-2.8149	-0.0016081	571.2800589274913	60.749	0.12733	60.749	60.664	60.792	0					5	4	2	0	0	0	0.23783	1	14873	14873		18.135	0	1	105750			6368	3242	3240	3240	8867	8867					-0.015490791338606869
DYPSKMEYF	9	Oxidation (M)	_DYPSKM(Oxidation (M))EYF_		DYPSKM(1)EYF		DYPSKM(50)EYF	0	0	1		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.2523193359375	2	598.25244	1194.49033	0.66964	0.00040061	0.0014856	8.8875E-07	0.67112	0.0004015	598.2521933369947	44.873	1.0077	44.873	44.522	45.53	0					97	36	4	0	0	0	0.059067	2	9956	9956;10003		49.527	13.4	1	807800			6369	1217	3241	3241	8868;8869	8868		145			-0.09913923490489651
DYPSKMEYF	9	Oxidation (M)	_DYPSKM(Oxidation (M))EYF_		DYPSKM(1)EYF		DYPSKM(68)EYF	0	0	1		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.25341796875	2	598.25244	1194.49033	0.64658	0.00038682	-0.030249	-1.8097E-05	0.61633	0.00036872	598.2522254602519	44.594	0.88231	44.663	44.349	45.232	0.068569					78	31	3	0	0	0	0.017549	2	9878	9878;9927		67.838	29.864	1	861860			6370	1217	3241	3241	8870;8871	8870		145			-0.09913923490489651
DYPSKMEYF	9	Oxidation (M)	_DYPSKM(Oxidation (M))EYF_		DYPSKM(1)EYF		DYPSKM(46)EYF	0	0	1		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.2526245117188	2	598.25244	1194.49033	0.54022	0.00032319	-0.058707	-3.5122E-05	0.48152	0.00028807	598.2522105195627	44.605	0.92682	44.68	44.307	45.234	0.07505					93	33	4	0	0	0	0.069258	3	9899	9848;9899;9955		45.74	15.103	1	892170			6371	1217	3241	3241	8872;8873;8874	8873		145			-0.09913923490489651
DYQEMFVQF	9	Oxidation (M)	_DYQEM(Oxidation (M))FVQF_		DYQEM(1)FVQF		DYQEM(48)FVQF	0	0	1		ENSG00000074855|ENST00000159087|ANO8;nc|ENSG00000074855|Q9HCE9-2|ANO8;ENST00000597643.5_1_19:17434328-17439993:-|nuORF	ENSG00000074855|ENST00000159087|ANO8	ENSG00000074855|ENST00000159087|ANO8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.7577514648438	2	611.757889	1221.50123	0.23091	0.00014126	-0.81078	-0.000496	-0.57987	-0.00035474	611.7577750843045	73.315	0.88449	73.315	72.881	73.766	0					76	31	3	0	0	0	0.063898	3	18685	18685;18747;18799		47.732	28.475	1	502570			6372	1031	3242	3242	8875;8876;8877	8875		125			-0.10066521116232252
DYQEMFVQF	9	Oxidation (M)	_DYQEM(Oxidation (M))FVQF_		DYQEM(1)FVQF		DYQEM(63)FVQF	0	0	1		ENSG00000074855|ENST00000159087|ANO8;nc|ENSG00000074855|Q9HCE9-2|ANO8;ENST00000597643.5_1_19:17434328-17439993:-|nuORF	ENSG00000074855|ENST00000159087|ANO8	ENSG00000074855|ENST00000159087|ANO8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.7579345703125	2	611.757889	1221.50123	0.19716	0.00012062	-0.75003	-0.00045884	-0.55287	-0.00033822	611.7577536798194	73.225	0.85069	73.279	72.898	73.749	0.053833					78	30	3	0	0	0	0.022205	2	18662	18662;18742		63.227	48.389	1	465750			6373	1031	3242	3242	8878;8879	8878		125			-0.10066521116232252
DYQEMFVQF	9	Oxidation (M)	_DYQEM(Oxidation (M))FVQF_		DYQEM(1)FVQF		DYQEM(59)FVQF	0	0	1		ENSG00000074855|ENST00000159087|ANO8;nc|ENSG00000074855|Q9HCE9-2|ANO8;ENST00000597643.5_1_19:17434328-17439993:-|nuORF	ENSG00000074855|ENST00000159087|ANO8	ENSG00000074855|ENST00000159087|ANO8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.7576904296875	2	611.757889	1221.50123	0.3056	0.00018695	-1.0117	-0.0006189	-0.70608	-0.00043195	611.7577016192267	73.339	0.87035	73.309	72.873	73.744	-0.029305					78	31	3	0	0	0	0.032589	2	18778	18727;18778		59.368	38.915	1	465490			6374	1031	3242	3242	8880;8881	8881		125			-0.10066521116232252
DYQRLLQTI	9	Unmodified	_DYQRLLQTI_					0	0	0		ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3170776367188	2	575.316763	1148.61897	0.49203	0.00028307	-0.22867	-0.00013156	0.26336	0.00015152	575.3168562015926	64.019	0.54274	64.111	63.848	64.391	0.09288					34	19	3	0	0	0	0.10812	1	15910	15910		37.075	2.1426	1	376130			6375	579	3243	3243	8882	8882					0.050607995347718315
DYQRLLQTI	9	Unmodified	_DYQRLLQTI_					0	0	0		ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	ENST00000476275.5_1_1:78046613-78098535:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	575.316763	1148.61897	0.4699	0.00027034	-0.26902	-0.00015477	0.20089	0.00011557	575.3166834209349	64.155	0.45256	64.145	63.936	64.389	-0.0095291	0.02893	-8.8239E-05	NaN	37.075	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300540			6376	579	3243	3243							0.050607995347718315
DYRAYYTF	8	Unmodified	_DYRAYYTF_					0	0	0		nc|ENSG00000152254|Q9NQR9-2|G6PC2;nc|ENSG00000152254|Q9NQR9-3|G6PC2;ENSG00000152254|ENST00000375363|G6PC2	nc|ENSG00000152254|Q9NQR9-2|G6PC2	nc|ENSG00000152254|Q9NQR9-2|G6PC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7598876953125	2	549.748182	1097.48181	0.63925	0.00035143	1.0586	0.00058195	1.6978	0.00093338	549.7488895006572	79.018	1.1223	79.076	78.39	79.513	0.058594					68	47	2	0	0	0	0.4397	2	20442	20442;20484		9.3474	1.4373	1	75738			6377	5010	3244	3244	8883;8884	8883					-0.06303109344821678
DYREISSLH	9	Unmodified	_DYREISSLH_					0	0	0			REV__ENSG00000179454|ENST00000396128|KLHL28	REV__ENSG00000179454|ENST00000396128|KLHL28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8289184570312	2	560.275095	1118.53564	0.2448	0.00013715	0.33419	0.00018724	0.57899	0.0003244	560.2751034791847	24.502	0.42336	24.502	24.312	24.736	0					20	13	2	0	0	0	0.26031	1	3814	3814		3.5965	0	1	44921	+		6378	18076	3245	3245	8885	8885					-0.01888936913087491
DYREISSLH	9	Unmodified	_DYREISSLH_					0	0	0			REV__ENSG00000179454|ENST00000396128|KLHL28	REV__ENSG00000179454|ENST00000396128|KLHL28	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.275095	1118.53564	0.32427	0.00018168	0.39986	0.00022403	0.72413	0.00040571	560.2751652227569	24.633	0.43369	24.577	24.404	24.837	-0.055931	0.03018	7.8877E-05	NaN	3.5965	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54520	+		6379	18076	3245	3245							-0.01888936913087491
DYREISSLH	9	Unmodified	_DYREISSLH_					0	0	0			REV__ENSG00000179454|ENST00000396128|KLHL28	REV__ENSG00000179454|ENST00000396128|KLHL28	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	560.275095	1118.53564	0.054544	3.056E-05	0.31166	0.00017462	0.36621	0.00020518	560.2754641832942	24.592	0.46275	24.561	24.4	24.862	-0.031408	0.014567	-1.9947E-05	NaN	3.5965	22	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57271	+		6380	18076	3245	3245							-0.01888936913087491
DYRHKSLFL	9	Unmodified	_DYRHKSLFL_					0	0	0		ENST00000467136.5_1_X:30854677-30861194:-|nuORF	ENST00000467136.5_1_X:30854677-30861194:-|nuORF	ENST00000467136.5_1_X:30854677-30861194:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.7650146484375	2	589.819473	1177.62439	0.1716	0.00010121	0.56312	0.00033214	0.73472	0.00043335	589.8200234284515	76.075	0.26189	76.075	75.932	76.193	0					13	9	3	0	0	0	0.25202	1	19577	19577		10.824	2.9138	1	114280			6381	10820	3246	3246	8886	8886					0.04268523117229961
DYRMLKVF	8	Unmodified	_DYRMLKVF_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2974243164062	2	536.28642	1070.55829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.552	1	71.609	71.109	72.109	0.056572								0	0	0	0.35014	1	18187	18187		14.582	0	1		+		6382	16508	3247	3247	8887	8887					0.025829909508274795
DYRNISVL	8	Unmodified	_DYRNISVL_					0	0	0		ENST00000477672.1_1_2:187351003-187359956:+|nuORF	ENST00000477672.1_1_2:187351003-187359956:+|nuORF	ENST00000477672.1_1_2:187351003-187359956:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2637939453125	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.566	1	78.566	78.066	79.066	0								0	0	0	0.35663	1	20333	20333		11.64	1.4569	1				6383	10960	3248	3248	8888	8888					0.023328834091330464
DYRNISVL	8	Unmodified	_DYRNISVL_					0	0	0		ENST00000477672.1_1_2:187351003-187359956:+|nuORF	ENST00000477672.1_1_2:187351003-187359956:+|nuORF	ENST00000477672.1_1_2:187351003-187359956:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2632751464844	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.763	1	78.763	78.263	79.263	0								0	0	0	0.35663	1	20393	20393		11.64	1.4569	1				6384	10960	3248	3248	8889	8889					0.023328834091330464
DYRNISVL	8	Unmodified	_DYRNISVL_					0	0	0		ENST00000477672.1_1_2:187351003-187359956:+|nuORF	ENST00000477672.1_1_2:187351003-187359956:+|nuORF	ENST00000477672.1_1_2:187351003-187359956:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.26300048828125	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.763	1	78.821	78.321	79.321	0.058151								0	0	0	0.35663	1	20383	20383		11.64	1.4569	1				6385	10960	3248	3248	8890	8890					0.023328834091330464
DYRNISVL	8	Unmodified	_DYRNISVL_					0	0	0		ENST00000477672.1_1_2:187351003-187359956:+|nuORF	ENST00000477672.1_1_2:187351003-187359956:+|nuORF	ENST00000477672.1_1_2:187351003-187359956:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.26324462890625	2	490.263999	978.513445	0.66676	0.00032689	-1.5513	-0.00076054	-0.88453	-0.00043365	490.26355416666274	78.914	3.0295	78.883	76.83	79.859	-0.030434					177	116	3	0	0	0	0.43302	2	20365	20365;20417		11.64	1.5664	1	224780			6386	10960	3248	3248	8891;8892	8891					0.023328834091330464
DYRWWWRN	8	Unmodified	_DYRWWWRN_					0	0	0		ENSG00000101337|ENST00000398022|TM9SF4;ENST00000479591.1_1_20:30749036-30753244:+|nuORF	ENSG00000101337|ENST00000398022|TM9SF4	ENSG00000101337|ENST00000398022|TM9SF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.22021484375	3	427.868585	1280.58392	0.039221	1.6781E-05	1.6349	0.00069953	1.6741	0.00071631	427.86929525944913	36.162	0.50163	36.162	35.856	36.358	0					33	18	2	0	0	0	0.34424	1	7306	7306		1.6526	0.54287	1	200650			6387	1684	3249	3249	8893	8893					-0.04514398482524484
DYSKESFWK	9	Unmodified	_DYSKESFWK_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B;nc|ENSG00000188649|Q6DHV5-1|CC2D2B;nc|ENSG00000188649|Q6DHV5-2|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.7938842773438	2	595.279846	1188.54514	0.39083	0.00023266	-2.2053	-0.0013128	-1.8145	-0.0010801	595.2788920976625	59.222	0.29868	59.222	59.081	59.38	0					14	10	2	0	0	0	0.23749	1	14369	14369		15.248	1.3424	1	168010			6388	7765	3250	3250	8894	8894					-0.04159168627575127
DYSSEMLLF	9	Unmodified	_DYSSEMLLF_					0	0	0		ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7498779296875	2	552.749533	1103.48451	0.37062	0.00020486	0.1417	7.8324E-05	0.51232	0.00028319	552.7492599067656	73.147	0.86015	73.147	72.667	73.527	0					65	30	3	0	0	0	0.193	2	18680	18680;18723		24.674	6.5389	1	365050			6389	11310	3251	3251	8895;8896	8895					-0.06309022002164966
DYSSEMLLF	9	Unmodified	_DYSSEMLLF_					0	0	0		ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7496337890625	2	552.749533	1103.48451	0.31737	0.00017543	-0.12051	-6.6612E-05	0.19686	0.00010882	552.7491539187004	73.139	0.70654	73.193	72.765	73.471	0.053833					45	25	2	0	0	0	0.193	1	18684	18684		24.674	3.8027	1	373220			6390	11310	3251	3251	8897	8897					-0.06309022002164966
DYSSEMLLF	9	Unmodified	_DYSSEMLLF_					0	0	0		ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7495727539062	2	552.749533	1103.48451	0.43886	0.00024258	0.20115	0.00011119	0.64002	0.00035377	552.7492473912786	73.176	0.79013	73.147	72.767	73.557	-0.029305					51	28	2	0	0	0	0.10075	1	18669	18669		38.151	7.9264	1	329950			6391	11310	3251	3251	8898	8898					-0.06309022002164966
DYSSEMLLF	9	Unmodified	_DYSSEMLLF_					0	0	0		ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	552.749533	1103.48451	0.37062	0.00020486	0.1417	7.8324E-05	0.51232	0.00028319	552.7492599067656	73.147	0.86015	73.147	72.667	73.527	0	-0.01519	0.00011296	NaN	38.151	65	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365050			6392	11310	3251	3251							-0.06309022002164966
DYSSEMLLF	9	Unmodified	_DYSSEMLLF_					0	0	0		ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	552.749533	1103.48451	0.31737	0.00017543	-0.12051	-6.6612E-05	0.19686	0.00010882	552.7491539187004	73.139	0.70654	73.193	72.765	73.471	0.053833	0.030765	-0.00017691	NaN	38.151	45	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373220			6393	11310	3251	3251							-0.06309022002164966
DYSSILQKF	9	Unmodified	_DYSSILQKF_					0	0	0		nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.786376953125	2	550.784764	1099.55498	0.38335	0.00021114	1.0825	0.0005962	1.4658	0.00080734	550.7865443303892	67.606	0.95564	67.606	67.222	68.178	0					89	33	3	0	0	0	4.8913000000000006E-24	3	17013	16952;16968;17013		240.41	169.28	1	68095000			6394	7672	3252	3252	8899;8900;8901	8901					0.009180193778320245
DYSSILQKF	9	Unmodified	_DYSSILQKF_					0	0	0		nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.7869262695312	2	550.784764	1099.55498	0.51287	0.00028248	0.85402	0.00047038	1.3669	0.00075286	550.7864155663908	67.467	0.986	67.545	67.183	68.169	0.078041					92	34	3	0	0	0	3.0823E-17	4	16932	16906;16922;16932;16965		223.06	161.7	1	59155000			6395	7672	3252	3252	8902;8903;8904;8905	8904					0.009180193778320245
DYSSILQKF	9	Unmodified	_DYSSILQKF_					0	0	0		nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.7869262695312	2	550.784764	1099.55498	0.31723	0.00017472	1.4439	0.00079528	1.7611	0.00097001	550.786816213674	67.566	0.93896	67.55	67.236	68.175	-0.016296					89	32	3	0	0	0	3.0646E-11	4	16970	16943;16970;16995;17020		193.29	149.44	1	67780000			6396	7672	3252	3252	8906;8907;8908;8909	8907					0.009180193778320245
DYSVGQSVSF	10	Unmodified	_DYSVGQSVSF_					0	0	0		nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7485961914062	2	544.748379	1087.4822	1.1533	0.00062828	-0.16756	-9.1279E-05	0.98578	0.000537	544.7480018329607	50.658	0.56315	50.679	50.413	50.976	0.020695					68	20	4	0	0	0	0.14021	1	11798	11798		39.95	5.548	1	948750			6397	7348	3253	3253	8910	8910					-0.05803734415599138
DYSYNNFRVT	10	Unmodified	_DYSYNNFRVT_					0	0	0		nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.26422119140625	3	426.863165	1277.56767	-0.082495	-3.5214E-05	-0.25699	-0.0001097	-0.33949	-0.00014492	426.86299284599744	17.189	0.61691	17.189	16.952	17.568	0					51	21	3	0	0	0	0.32167	1	1488	1488		0.62683	0.12087	1	114240			6398	408	3254	3254	8911	8911					-0.06001569229965753
DYTGALAVF	9	Unmodified	_DYTGALAVF_					0	0	0		ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7398376464844	2	478.739825	955.465098	0.49871	0.00023875	-0.23754	-0.00011372	0.26117	0.00012503	478.73963316078164	78.551	0.8539	78.551	78.249	79.103	0					81	33	3	0	0	0	0.0036555	1	20355	20355		97.075	36.685	1	1264800			6399	8730	3255	3255	8912	8912					-0.014416102307677647
DYTGALAVF	9	Unmodified	_DYTGALAVF_					0	0	0		ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7398376464844	2	478.739825	955.465098	0.49423	0.00023661	-0.27761	-0.0001329	0.21661	0.0001037	478.739635701689	78.532	1.6037	78.59	77.513	79.117	0.058151					127	60	4	0	0	0	0.0046213	2	20331	20331;20388		89.427	38.572	1	1087900			6400	8730	3255	3255	8913;8914	8913					-0.014416102307677647
DYTGALAVF	9	Unmodified	_DYTGALAVF_					0	0	0		ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	ENSG00000277150|ENST00000622749|F8A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.73974609375	2	478.739825	955.465098	0.65895	0.00031547	-0.46453	-0.00022239	0.19443	9.308E-05	478.73953206589806	78.615	1.3466	78.585	77.731	79.078	-0.030426					128	52	4	0	0	0	0.0036555	1	20344	20344		97.075	36.685	1	1328600			6401	8730	3255	3255	8915	8915					-0.014416102307677647
DYTIGFGKF	9	Unmodified	_DYTIGFGKF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3138427734375	2	524.260925	1046.5073	0.73072	0.00038309	-0.053417	-2.8005E-05	0.6773	0.00035508	524.2607855062778	65.891	0.60693	65.98	65.784	66.391	0.088882					42	21	3	0	0	0	0.0069488	1	16451	16451		96.111	67.624	1	483110			6402	3638	3256	3256	8916	8916					-0.01409634822357475
DYTIGFGKF	9	Unmodified	_DYTIGFGKF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	524.260925	1046.5073	0.72929	0.00038234	0.07977	4.1821E-05	0.80906	0.00042416	524.2607676203726	66.08	0.55101	66.08	65.845	66.396	0	0.059157	0.00015642	NaN	75.761	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	434110			6403	3638	3256	3256							-0.01409634822357475
DYTIGFGKF	9	Unmodified	_DYTIGFGKF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.260925	1046.5073	0.57723	0.00030262	-0.23878	-0.00012518	0.33845	0.00017744	524.2606261815079	66.016	0.6089	66.003	65.797	66.406	-0.013588	-0.018084	-0.00017758	NaN	75.761	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465400			6404	3638	3256	3256							-0.01409634822357475
DYTILLHNI	9	Unmodified	_DYTILLHNI_					0	0	0		ENSG00000079257|ENST00000264265|LXN	ENSG00000079257|ENST00000264265|LXN	ENSG00000079257|ENST00000264265|LXN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.3003540039062	2	551.300581	1100.58661	0.4094	0.0002257	-0.70572	-0.00038906	-0.29631	-0.00016336	551.3001303330661	71.166	1.555	71.166	70.873	72.428	0					109	55	4	0	0	0	0.00014042	1	18105	18105		134.3	96.322	1	3793100			6405	1127	3257	3257	8917	8917					0.04034012131751297
DYTILLHNI	9	Unmodified	_DYTILLHNI_					0	0	0		ENSG00000079257|ENST00000264265|LXN	ENSG00000079257|ENST00000264265|LXN	ENSG00000079257|ENST00000264265|LXN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.300537109375	2	551.300581	1100.58661	0.47941	0.0002643	-0.72254	-0.00039834	-0.24314	-0.00013404	551.3000889098902	71.226	1.4572	71.201	70.943	72.401	-0.024864					108	52	4	0	0	0	0.00014042	1	18106	18106		134.3	96.322	1	4048900			6406	1127	3257	3257	8918	8918					0.04034012131751297
DYTILLHNI	9	Unmodified	_DYTILLHNI_					0	0	0		ENSG00000079257|ENST00000264265|LXN	ENSG00000079257|ENST00000264265|LXN	ENSG00000079257|ENST00000264265|LXN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	551.300581	1100.58661	0.41946	0.00023125	-0.72486	-0.00039961	-0.30539	-0.00016836	551.3000730164645	71.106	1.1912	71.166	70.928	72.12	0.060783	-0.011576	-7.342E-06	NaN	134.3	85	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4295000			6407	1127	3257	3257							0.04034012131751297
DYTSRFSEF	9	Unmodified	_DYTSRFSEF_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3790893554688	2	576.253828	1150.4931	0.61004	0.00035154	-0.21609	-0.00012452	0.39395	0.00022701	576.2534451423982	54.444	0.36741	54.507	54.327	54.694	0.063202					18	13	3	0	0	0	0.19208	1	12892	12892		33.445	5.2717	1	161310			6408	3536	3258	3258	8919	8919					-0.07612332041321679
DYTSRFSEF	9	Unmodified	_DYTSRFSEF_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	576.253828	1150.4931	0.60296	0.00034746	-0.35412	-0.00020406	0.24884	0.00014339	576.2534434584301	54.826	0.1945	54.81	54.706	54.9	-0.015919	0.15161	-6.998E-05	NaN	33.445	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129480			6409	3536	3258	3258							-0.07612332041321679
DYTTTIEAF	9	Unmodified	_DYTTTIEAF_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3053588867188	2	530.745305	1059.47606	0.49768	0.00026414	0.13647	7.2429E-05	0.63415	0.00033657	531.2468761483198	70.159	0.25174	70.136	69.965	70.217	-0.022087					11	8	2	0	0	0	0.1854	1	17755	17755		32.305	11.852	1	66173			6410	3985	3259	3259	8920	8920					-0.05130252647154521
DYVDVLQMD	9	Unmodified	_DYVDVLQMD_					0	0	0		ENSG00000088538|ENST00000266037|DOCK3	ENSG00000088538|ENST00000266037|DOCK3	ENSG00000088538|ENST00000266037|DOCK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3048706054688	2	549.244615	1096.47468	0.32768	0.00017997	3.3198	0.0018234	3.6474	0.0020033	549.7493259212832	66.752	0.81544	66.739	66.303	67.118	-0.013588					58	29	3	0	0	0	0.21389	1	16651	16651		25.399	9.5521	1	117470			6411	1325	3260	3260	8921	8921					-0.0697021000753466
DYVEGLRVF	9	Unmodified	_DYVEGLRVF_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2862548828125	2	549.284931	1096.55531	0.59024	0.00032421	0.4001	0.00021977	0.99034	0.00054398	549.2855892912239	66.211	1.4688	66.211	65.899	67.368	0					182	51	5	0	0	0	0.00019464	3	16565	16523;16565;16614		133.05	87.031	1	20439000			6412	1427	3261	3261	8922;8923;8924	8923					0.010894390976773138
DYVEGLRVF	9	Unmodified	_DYVEGLRVF_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2977294921875	2	549.284931	1096.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.181	1	70.181	69.681	70.681	0								0	0	0	0.14907	1	17774	17774		34.932	10.911	1				6413	1427	3261	3261	8925	8925					0.010894390976773138
DYVEGLRVF	9	Unmodified	_DYVEGLRVF_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2863159179688	2	549.284931	1096.55531	0.66153	0.00036337	0.35921	0.00019731	1.0207	0.00056068	549.2855621554448	66.066	1.4681	66.149	65.834	67.302	0.083832					176	52	5	0	0	0	0.00045155	5	16517	16473;16517;16519;16559;16602		129.77	83.751	1	19922000			6414	1427	3261	3261	8926;8927;8928;8929;8930	8927					0.010894390976773138
DYVEGLRVF	9	Unmodified	_DYVEGLRVF_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2861938476562	2	549.284931	1096.55531	0.48471	0.00026624	0.53049	0.00029139	1.0152	0.00055764	549.2856367789702	66.224	1.7312	66.211	65.89	67.621	-0.013596					186	61	5	0	0	0	0.0010968	5	16561	16515;16554;16561;16609;16618		121.53	75.513	1	21283000			6415	1427	3261	3261	8931;8932;8933;8934;8935	8933					0.010894390976773138
DYVPSDQDLL	10	Unmodified	_DYVPSDQDLL_					0	0	0		nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;GNAS|p.E209*|1|0.26|ENSG00000087460|chr20:58909385-58909386|-/T|frameshift_variant	nc|ENSG00000087460|P63092-3|GNAS	nc|ENSG00000087460|P63092-3|GNAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.2667236328125	2	582.774593	1163.53463	0.29309	0.00017081	-0.59306	-0.00034562	-0.29998	-0.00017482	582.7757831467857	70.706	0.41315	70.767	70.574	70.987	0.060783					22	14	2	0	0	0	0.28569	1	17932	17932		26.268	4.5215	1	160470			6416	1308	3262	3262	8936	8936					-0.04059196072648774
DYVREECTF	9	Unmodified	_DYVREECTF_					0	0	0			REV__ENSG00000230268|ENST00000473520|SSU72L6	REV__ENSG00000230268|ENST00000473520|SSU72L6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.2467651367188	2	581.247689	1160.48082	0.20492	0.00011911	-1.2116	-0.00070427	-1.0067	-0.00058516	581.246528754372	92.821	0.48473	92.821	92.548	93.032	0					63	38	2	0	0	0	0.2719	1	24720	24720		13.042	0	1	123990	+		6417	19129	3263	3263	8937	8937					-0.0929969177602743
DYVREECTF	9	Unmodified	_DYVREECTF_					0	0	0			REV__ENSG00000230268|ENST00000473520|SSU72L6	REV__ENSG00000230268|ENST00000473520|SSU72L6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	581.247689	1160.48082	0.20492	0.00011911	-1.2116	-0.00070427	-1.0067	-0.00058516	581.246528754372	92.821	0.48473	92.821	92.548	93.032	0	0.03519	0.00014085	NaN	13.042	63	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123990	+		6418	19129	3263	3263							-0.0929969177602743
DYVREECTF	9	Unmodified	_DYVREECTF_					0	0	0			REV__ENSG00000230268|ENST00000473520|SSU72L6	REV__ENSG00000230268|ENST00000473520|SSU72L6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	581.247689	1160.48082	0.26945	0.00015662	-1.4577	-0.0008473	-1.1883	-0.00069068	581.2465863174614	92.65	0.46673	92.739	92.543	93.01	0.089195	-0.047015	-0.00014522	NaN	13.042	59	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309470	+		6419	19129	3263	3263							-0.0929969177602743
DYYLEIQGI	9	Unmodified	_DYYLEIQGI_					0	0	0			REV__ENST00000532160.1_1_11:134095196-134104948:+|nuORF	REV__ENST00000532160.1_1_11:134095196-134104948:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2769165039062	2	557.276772	1112.53899	0.3698	0.00020608	-0.29796	-0.00016605	0.071835	4.0032E-05	557.2766010347934	75.359	0.64962	75.411	75.131	75.781	0.052361					61	23	4	0	0	0	0.019245	1	19380	19380		65.235	2.6623	1	545520	+		6420	16544	3264	3264	8938	8938					-0.012776868590890444
DYYLSAEILSK	11	Unmodified	_DYYLSAEILSK_					0	0	0		nc|ENSG00000132554|Q8NE09-2|RGS22;ENST00000520923.5_1_8:101051146-101092499:-|nuORF;nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22	nc|ENSG00000132554|Q8NE09-2|RGS22	nc|ENSG00000132554|Q8NE09-2|RGS22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.55902099609375	3	434.558971	1300.65508	-0.13302	-5.7805E-05	-0.24749	-0.00010755	-0.38051	-0.00016535	434.55897109215095	16.41	0.90493	16.348	16.038	16.943	-0.062534					93	31	5	0	0	0	0.22132	2	1334	1291;1334		29.291	4.8795	1	1054000			6421	3648	3265	3265	8939;8940	8940					0.016782119209665325
EAAGWEPSL	9	Unmodified	_EAAGWEPSL_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.80010986328125	2	480.227082	958.439611	0.34871	0.00016746	-2.0402	-0.00097974	-1.6915	-0.00081228	480.22595080045363	51.251	0.2911	51.251	51.139	51.43	0					19	10	2	0	0	0	0.2451	1	12000	12000		15.847	0	1	167320	+		6422	16663	3266	3266	8941	8941					-0.04127084753190502
EAAHGGNVLI	10	Unmodified	_EAAHGGNVLI_					0	0	0		ENSG00000036473|ENST00000039007|OTC	ENSG00000036473|ENST00000039007|OTC	ENSG00000036473|ENST00000039007|OTC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2189025878906	2	490.761623	979.508694	0.027127	1.3313E-05	0.29408	0.00014432	0.32121	0.00015764	490.7620235032503	14.501	0.59787	14.501	14.191	14.789	0					33	20	2	0	0	0	0.31039	1	759	759		18.146	8.7989	1	67466			6423	578	3267	3267	8942	8942					0.018119992663855555
EAAHGGNVLI	10	Unmodified	_EAAHGGNVLI_					0	0	0		ENSG00000036473|ENST00000039007|OTC	ENSG00000036473|ENST00000039007|OTC	ENSG00000036473|ENST00000039007|OTC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.21881103515625	2	490.761623	979.508694	0.061473	3.0169E-05	0.2084	0.00010227	0.26987	0.00013244	490.76175094293865	14.609	0.64984	14.504	14.338	14.988	-0.10466					33	22	3	0	0	0	0.3144	1	813	813		13.042	3.695	1	74592			6424	578	3267	3267	8943	8943					0.018119992663855555
EAAQLEKQ	8	Unmodified	_EAAQLEKQ_					0	0	0		nc|ENSG00000250305|Q9P272-3|TRMT9B;ENSG00000250305|ENST00000524591|TRMT9B	nc|ENSG00000250305|Q9P272-3|TRMT9B	nc|ENSG00000250305|Q9P272-3|TRMT9B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.75872802734375	2	458.740357	915.46616	-0.01591	-7.2984E-06	-0.15235	-6.9887E-05	-0.16826	-7.7185E-05	458.7403129792049	22.572	0.48952	22.527	22.409	22.898	-0.044867					25	16	2	0	0	0	0.32099	1	3207	3207		25.399	0	1	37976			6425	8590	3268	3268	8944	8944					0.005046041381433497
EACGPGSSCSS	11	Unmodified	_EACGPGSSCSS_					0	0	0		nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2	nc|ENSG00000184792|Q969R2-5|OSBP2	nc|ENSG00000184792|Q969R2-5|OSBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.1753845214844	2	492.673499	983.332445	0.33097	0.00016306	-0.96565	-0.00047575	-0.63469	-0.00031269	492.67378914437955	17.255	2.1305	17.255	15.947	18.077	0					220	73	4	0	0	0	0.46277	1	1668	1668		2.9952	0.10602	1	701270			6426	7473	3269	3269	8945	8945					-0.1598874602136675
EAELAKHKQL	10	Unmodified	_EAELAKHKQL_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.377197265625	2	583.830037	1165.64552	0.18032	0.00010527	-0.34923	-0.00020389	-0.16891	-9.8614E-05	583.8297986209982	38.386	0.34156	38.386	38.177	38.518	0					18	11	2	0	0	0	0.31889	1	7968	7968		6.2058	1.4498	1	145880	+		6427	15891	3270	3270	8946	8946					0.06932488426082273
EAELREKLCSI	11	Unmodified	_EAELREKLCSI_					0	0	0		ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8882141113281	3	430.895589	1289.66494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.367	1	34.439	33.939	34.939	0.071991								0	0	0	0.34766	1	6763	6763		4.4062	0.28952	1				6428	3929	3271	3271	8947	8947					0.03169076654694436
EAETQPRHL	9	Unmodified	_EAETQPRHL_					0	0	0			REV__ENST00000523568.1_7:102228019-102246337:-|nuORF	REV__ENST00000523568.1_7:102228019-102246337:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2340698242188	2	540.775262	1079.53597	0.17659	9.5497E-05	-0.494	-0.00026714	-0.31741	-0.00017165	540.7747270342621	18.571	0.36621	18.513	18.341	18.707	-0.058174					21	12	2	0	0	0	0.26145	1	2007	2007		2.0598	0	1	71082	+		6429	14488	3272	3272	8948	8948					-0.000615171932395242
EAFFQGKSL	9	Unmodified	_EAFFQGKSL_					0	0	0		ENSG00000091106|ENST00000402280|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7848510742188	2	513.766374	1025.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.231	1	62.222	61.722	62.722	-0.0085526								0	0	0	0.19013	1	15331	15331		25.399	2.663	1				6430	1395	3273	3273	8949	8949					0.0064576755189591495
EAFGNAKTV	9	Unmodified	_EAFGNAKTV_					0	0	0		MYO10|p.L1518Mfs*53|1|0.04|ENSG00000145555|chr5:16676145-16676146|-/AGACCAT|frameshift_variant;ENSG00000145555|ENST00000513610|MYO10;ENST00000598529.5_1_19:8616563-8619410:-|nuORF;ENST00000557461.1_1_14:23869380-23876432:-|nuORF;MYH6|p.N598Kfs*38|1|0.16|ENSG00000197616|chr14:23398825-23398826|-/T|frameshift_variant;nc|ENSG00000125414|Q9UKX2-2|MYH2;MYH4|p.L902Sfs*12|1|0.08|ENSG00000264424|chr17:10453874-10453875|-/AA|frameshift_variant;MYH4|p.N981Tfs*16|1|0.22|ENSG00000264424|chr17:10453321-10453321|T/-|frameshift_variant;MYH2|p.D1767Mfs*4|1|0.19|ENSG00000125414|chr17:10523762-10523762|A/-|frameshift_variant;ENSG00000006788|ENST00000252172|MYH13;ENSG00000264424|ENST00000255381|MYH4;ENSG00000125414|ENST00000245503|MYH2;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENSG00000157483|ENST00000288235|MYO1E;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6;ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENSG00000092054|ENST00000355349|MYH7;ENSG00000197616|ENST00000405093|MYH6;ENSG00000133020|ENST00000403437|MYH8;ENSG00000109061|ENST00000226207|MYH1;MYH3|p.N1505Tfs*2|1|0.27|ENSG00000109063|chr17:10634027-10634027|C/-|frameshift_variant;MYH3|p.N1503Kfs*16|1|0.26|ENSG00000109063|chr17:10634029-10634030|TA/-|frameshift_variant;ENSG00000109063|ENST00000583535|MYH3	MYO10|p.L1518Mfs*53|1|0.04|ENSG00000145555|chr5:16676145-16676146|-/AGACCAT|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11;ENSG00000157483|ENST00000288235|MYO1E;nc|ENSG00000128641|O43795-2|MYO1B;nc|ENSG00000196586|Q9UM54-5|MYO6;ENSG00000142347|ENST00000644032|MYO1F;ENSG00000092054|ENST00000355349|MYH7;ENSG00000133020|ENST00000403437|MYH8;MYH3|p.N1505Tfs*2|1|0.27|ENSG00000109063|chr17:10634027-10634027|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7430725097656	2	468.742899	935.471246	0.051624	2.4198E-05	0.12867	6.0315E-05	0.1803	8.4513E-05	468.74291065045475	26.831	0.50505	26.81	26.564	27.069	-0.021412					37	17	3	0	0	0	0.10812	1	4472	4472		37.075	11.675	1	287120			6431	1574;5309;1970;12694;3708;7883;4439;4658;1416;2229;2231	3274	3274	8950	8950					0.000929080007608718
EAFGNAKTV	9	Unmodified	_EAFGNAKTV_					0	0	0		MYO10|p.L1518Mfs*53|1|0.04|ENSG00000145555|chr5:16676145-16676146|-/AGACCAT|frameshift_variant;ENSG00000145555|ENST00000513610|MYO10;ENST00000598529.5_1_19:8616563-8619410:-|nuORF;ENST00000557461.1_1_14:23869380-23876432:-|nuORF;MYH6|p.N598Kfs*38|1|0.16|ENSG00000197616|chr14:23398825-23398826|-/T|frameshift_variant;nc|ENSG00000125414|Q9UKX2-2|MYH2;MYH4|p.L902Sfs*12|1|0.08|ENSG00000264424|chr17:10453874-10453875|-/AA|frameshift_variant;MYH4|p.N981Tfs*16|1|0.22|ENSG00000264424|chr17:10453321-10453321|T/-|frameshift_variant;MYH2|p.D1767Mfs*4|1|0.19|ENSG00000125414|chr17:10523762-10523762|A/-|frameshift_variant;ENSG00000006788|ENST00000252172|MYH13;ENSG00000264424|ENST00000255381|MYH4;ENSG00000125414|ENST00000245503|MYH2;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENSG00000157483|ENST00000288235|MYO1E;nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6;ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENSG00000092054|ENST00000355349|MYH7;ENSG00000197616|ENST00000405093|MYH6;ENSG00000133020|ENST00000403437|MYH8;ENSG00000109061|ENST00000226207|MYH1;MYH3|p.N1505Tfs*2|1|0.27|ENSG00000109063|chr17:10634027-10634027|C/-|frameshift_variant;MYH3|p.N1503Kfs*16|1|0.26|ENSG00000109063|chr17:10634029-10634030|TA/-|frameshift_variant;ENSG00000109063|ENST00000583535|MYH3	MYO10|p.L1518Mfs*53|1|0.04|ENSG00000145555|chr5:16676145-16676146|-/AGACCAT|frameshift_variant;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11;ENSG00000157483|ENST00000288235|MYO1E;nc|ENSG00000128641|O43795-2|MYO1B;nc|ENSG00000196586|Q9UM54-5|MYO6;ENSG00000142347|ENST00000644032|MYO1F;ENSG00000092054|ENST00000355349|MYH7;ENSG00000133020|ENST00000403437|MYH8;MYH3|p.N1505Tfs*2|1|0.27|ENSG00000109063|chr17:10634027-10634027|C/-|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.74273681640625	2	468.742899	935.471246	0.31436	0.00014735	-0.18821	-8.8224E-05	0.12614	5.9128E-05	468.74265917187785	26.859	0.72998	26.847	26.483	27.213	-0.01156					40	25	2	0	0	0	0.16826	1	4503	4503		40.725	15.326	1	245420			6432	1574;5309;1970;12694;3708;7883;4439;4658;1416;2229;2231	3274	3274	8951	8951					0.000929080007608718
EAFSDHPAI	9	Unmodified	_EAFSDHPAI_					0	0	0		ENSG00000198894|ENST00000361786|CIPC	ENSG00000198894|ENST00000361786|CIPC	ENSG00000198894|ENST00000361786|CIPC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.3237609863281	2	493.732532	985.45051	0.55183	0.00027246	-0.39315	-0.00019411	0.15868	7.8347E-05	493.7323615648479	40.586	0.48177	40.679	40.448	40.929	0.092674					23	17	2	0	0	0	0.25622	1	8655	8655		7.2892	0.56607	1	201520			6433	8153	3275	3275	8952	8952					-0.04279682378921734
EAFSRFETI	9	Unmodified	_EAFSRFETI_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2749633789062	2	550.274564	1098.53457	0.45843	0.00025226	0.31576	0.00017375	0.77419	0.00042601	550.2748396753306	52.758	0.48879	52.758	52.523	53.012	0					39	17	3	0	0	0	0.089483	1	12411	12411		59.368	25.266	1	707520			6434	423	3276	3276	8953	8953					-0.010751512819979325
EAFSRFETI	9	Unmodified	_EAFSRFETI_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2750244140625	2	550.274564	1098.53457	0.43866	0.00024139	0.32768	0.00018031	0.76634	0.0004217	550.2748124349665	52.971	0.51272	52.961	52.679	53.192	-0.0096054					40	18	3	0	0	0	0.01909	1	12489	12489		65.474	36.987	1	654810			6435	423	3276	3276	8954	8954					-0.010751512819979325
EAFSRFETI	9	Unmodified	_EAFSRFETI_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	550.274564	1098.53457	0.63917	0.00035172	0.50557	0.0002782	1.1447	0.00062992	550.2750146993649	52.71	0.66231	52.761	52.553	53.215	0.050571	-0.065745	0.0001468	NaN	65.474	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	675860			6436	423	3276	3276							-0.010751512819979325
EAFYNVITV	9	Unmodified	_EAFYNVITV_					0	0	0		nc|nan|Q5JPI3-2|C3orf38;ENSG00000179021|ENST00000318887|C3orf38	nc|nan|Q5JPI3-2|C3orf38	nc|nan|Q5JPI3-2|C3orf38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2743530273438	2	528.274032	1054.53351	0.76712	0.00040525	-0.13431	-7.0952E-05	0.63281	0.00033429	528.2739445346583	74.465	0.94504	74.465	74.098	75.043	0					70	32	3	0	0	0	0.0054984	1	19133	19133		86.332	23.759	1	1242600			6437	7096	3277	3277	8955	8955					0.008426343490782529
EAFYNVITV	9	Unmodified	_EAFYNVITV_					0	0	0		nc|nan|Q5JPI3-2|C3orf38;ENSG00000179021|ENST00000318887|C3orf38	nc|nan|Q5JPI3-2|C3orf38	nc|nan|Q5JPI3-2|C3orf38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2744140625	2	528.274032	1054.53351	0.39197	0.00020707	0.29508	0.00015588	0.68705	0.00036295	528.7756759729945	74.457	1.0987	74.509	74.06	75.159	0.052361					68	38	3	0	0	0	0.014206	1	19122	19122		72.968	10.395	1	1589100			6438	7096	3277	3277	8956	8956					0.008426343490782529
EAFYNVITV	9	Unmodified	_EAFYNVITV_					0	0	0		nc|nan|Q5JPI3-2|C3orf38;ENSG00000179021|ENST00000318887|C3orf38	nc|nan|Q5JPI3-2|C3orf38	nc|nan|Q5JPI3-2|C3orf38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2744750976562	2	528.274032	1054.53351	0.64777	0.0003422	-0.017732	-9.3672E-06	0.63004	0.00033284	528.2740486881967	74.592	0.92498	74.561	74.135	75.06	-0.030655					63	32	3	0	0	0	0.014206	1	19132	19132		72.968	19.135	1	1258700			6439	7096	3277	3277	8957	8957					0.008426343490782529
EAFYNVITV	9	Unmodified	_EAFYNVITV_					0	0	0		nc|nan|Q5JPI3-2|C3orf38;ENSG00000179021|ENST00000318887|C3orf38	nc|nan|Q5JPI3-2|C3orf38	nc|nan|Q5JPI3-2|C3orf38	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	528.274032	1054.53351	0.39197	0.00020707	0.29508	0.00015588	0.68705	0.00036295	528.7756759729945	74.457	1.0987	74.509	74.06	75.159	0.052361	-0.0026607	0.000267	NaN	86.332	68	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1589100			6440	7096	3277	3277							0.008426343490782529
EAGHKASKNNF	11	Unmodified	_EAGHKASKNNF_					0	0	0		ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.7998657226562	2	601.799269	1201.58398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.321	1	89.412	88.912	89.912	0.090569								0	0	0	0.31807	1	23625	23625		15.248	2.206	1				6441	5005	3278	3278	8958	8958					-0.00874443273187353
EAGKLNLLTV	10	Unmodified	_EAGKLNLLTV_					0	0	0		HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;nc|ENSG00000147874|Q7Z4H7-2|HAUS6;HAUS6|p.P532Hfs*10|1|0.04|ENSG00000147874|chr9:19063042-19063042|G/-|frameshift_variant	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.30419921875	2	529.316232	1056.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.55	1	40.55	40.05	41.05	0								0	0	0	0.25932	1	8658	8658		32.786	5.1569	1				6442	4788	3279	3279	8959	8959					0.0918658516582127
EAGKPIEKS	9	Unmodified	_EAGKPIEKS_					0	0	0			REV__ENSG00000035928|ENST00000349703|RFC1	REV__ENSG00000035928|ENST00000349703|RFC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7502136230469	2	479.763832	957.513111	0.027617	1.325E-05	-0.03599	-1.7267E-05	-0.0083728	-4.017E-06	479.76386162953827	18.942	1.4613	18.884	18.57	20.031	-0.058172					158	51	5	0	0	0	0.28128	1	2235	2235		11.64	1.5664	1	3662300	+		6443	13507	3280	3280	8960	8960					0.032654636892857525
EAGLGDAPFPF	11	Unmodified	_EAGLGDAPFPF_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.306884765625	2	560.769114	1119.52368	0.18153	0.0001018	-3.2367	-0.001815	-3.0551	-0.0017132	561.269556031019	97.494	0.16573	97.564	97.501	97.667	0.070465					27	20	2	0	0	0	0.33085	1	26087	26087		3.2813	2.6798	1	82712	+		6444	19116	3281	3281	8961	8961					-0.03130553656296797
EAGLGDAPFPF	11	Unmodified	_EAGLGDAPFPF_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	560.769114	1119.52368	0.25162	0.0001411	-1.7834	-0.0010001	-1.5318	-0.00085898	560.7661258654865	97.781	0.051689	97.774	97.739	97.791	-0.0068283	0.10466	0.0014434	NaN	3.2813	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32911	+		6445	19116	3281	3281							-0.03130553656296797
EAGTPIKRM	9	Unmodified	_EAGTPIKRM_					0	0	0			REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.292724609375	2	501.773677	1001.5328	0.13032	6.5393E-05	-0.32567	-0.00016341	-0.19535	-9.8019E-05	501.77365531636775	15.66	0.6781	15.55	15.347	16.025	-0.10981					42	22	3	0	0	0	0.31038	1	1145	1145		7.2892	0.56607	1	133330	+		6446	22880	3282	3282	8962	8962					0.03209516428398729
EAGVRRSR	8	Unmodified	_EAGVRRSR_					0	0	0		nc|ENSG00000117868|A0FGR8-2|ESYT2	nc|ENSG00000117868|A0FGR8-2|ESYT2	nc|ENSG00000117868|A0FGR8-2|ESYT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.23675537109375	2	465.765032	929.515511	0.054261	2.5273E-05	2.2605	0.0010529	2.3148	0.0010782	465.76617470571153	20.445	0.56744	20.445	20.285	20.853	0					23	19	2	0	0	0	0.34294	1	2577	2577		7.2892	0	1	50087			6447	12676	3283	3283	8963	8963					0.04793356937614135
EAHNLIDTI	9	Unmodified	_EAHNLIDTI_					0	0	0		ENST00000543026.5_1_12:31242773-31246356:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000013573|Q96FC9|DDX11	ENST00000543026.5_1_12:31242773-31246356:+|nuORF	ENST00000543026.5_1_12:31242773-31246356:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2742919921875	2	513.266739	1024.51892	0.57167	0.00029342	-2.4095	-0.0012367	-1.8378	-0.00094329	513.2654023434525	54.103	0.46375	54.103	53.858	54.322	0					27	16	2	0	0	0	0.20167	1	12876	12876		29.082	3.6823	1	409170			6448	11738	3284	3284	8964	8964					0.007645622009476938
EAIMMPVIL	9	Unmodified	_EAIMMPVIL_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8211975097656	2	508.779582	1015.54461	0.56687	0.00028841	0.75432	0.00038379	1.3212	0.0006722	508.77988370535985	32.169	0.51394	32.169	32.119	32.633	0					27	18	2	0	0	0	0.25879	1	6239	6239		4.756	0.42677	1	109720			6449	4743	3285	3285	8965	8965					0.03745997127384726
EAIMMPVIL	9	Unmodified	_EAIMMPVIL_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	508.779582	1015.54461	0.58925	0.0002998	0.65534	0.00033342	1.2446	0.00063322	508.7798202774009	32.039	0.49699	32.081	31.968	32.465	0.042366	-0.058187	-6.9647E-05	NaN	4.756	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112710			6450	4743	3285	3285							0.03745997127384726
EAIMMPVIL	9	Unmodified	_EAIMMPVIL_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.779582	1015.54461	0.3083	0.00015686	0.76935	0.00039143	1.0777	0.00054829	509.2815115306312	32.127	0.48165	32.168	32.031	32.513	0.040989	0.028435	4.6365E-05	NaN	4.756	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129060			6451	4743	3285	3285							0.03745997127384726
EAKGKVVKP	9	Unmodified	_EAKGKVVKP_					0	0	0			REV__MYH2|p.D1767Mfs*4|1|0.19|ENSG00000125414|chr17:10523762-10523762|A/-|frameshift_variant	REV__MYH2|p.D1767Mfs*4|1|0.19|ENSG00000125414|chr17:10523762-10523762|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.33123779296875	2	478.300384	954.586216	0.10531	5.0371E-05	0.47717	0.00022823	0.58248	0.0002786	478.300576291029	53.726	0.26104	53.783	53.56	53.821	0.056255					14	9	2	0	0	0	0.2451	1	12717	12717		15.847	7.937	1	193800	+		6452	15265	3286	3286	8966	8966					0.10710637202555517
EAKLEQQQ	8	Unmodified	_EAKLEQQQ_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7796325683594	2	487.251089	972.487624	0.3654	0.00017804	-0.48968	-0.0002386	-0.12428	-6.0555E-05	487.2509103625603	17.035	0.6788	16.974	16.705	17.384	-0.060431					41	24	2	0	0	0	0.34353	1	1603	1603		4.756	0	1	152370			6453	6847	3287	3287	8967	8967					0.0002798916684696451
EAKVYFNY	8	Unmodified	_EAKVYFNY_					0	0	0			REV__nc|ENSG00000148600|Q96JP9-2|CDHR1	REV__nc|ENSG00000148600|Q96JP9-2|CDHR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3182983398438	2	517.2531	1032.49165	0.46477	0.0002404	-0.97511	-0.00050438	-0.51034	-0.00026397	517.2526641469551	72.576	0.37133	72.576	72.456	72.827	0					21	13	2	0	0	0	0.33993	1	18545	18545		11.64	0	1	122340	+		6454	16429	3288	3288	8968	8968					-0.023299213394238905
EALALPRSL	9	Unmodified	_EALALPRSL_					0	0	0			REV__ENST00000600497.5_1_19:4715962-4719894:-|nuORF	REV__ENST00000600497.5_1_19:4715962-4719894:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.81646728515625	2	485.290017	968.565481	0.46754	0.00022689	0.07797	3.7838E-05	0.54551	0.00026473	485.290077865739	26.66	0.33864	26.638	26.472	26.811	-0.022236					16	11	2	0	0	0	0.25779	1	4430	4430		6.2058	0.47393	1	59144	+		6455	22627	3289	3289	8969	8969					0.07994046822898326
EALEAARI	8	Unmodified	_EALEAARI_					0	0	0		ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.7455749511719	2	436.745442	871.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.955	1	35.955	35.455	36.455	0								0	0	0	0.0045291	1	7254	7254		103.75	0	1				6456	4761	3290	3290	8970	8970					0.03545211863365694
EALEAARI	8	Unmodified	_EALEAARI_					0	0	0		ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.7455749511719	2	436.745442	871.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.806	1	35.888	35.388	36.388	0.082355								0	0	0	0.010691	1	7209	7209		92.491	0	1				6457	4761	3290	3290	8971	8971					0.03545211863365694
EALEAARI	8	Unmodified	_EALEAARI_					0	0	0		ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.74554443359375	2	436.745442	871.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.854	1	35.941	35.441	36.441	0.08625								0	0	0	0.0020636	1	7216	7216		111.29	0	1				6458	4761	3290	3290	8972	8972					0.03545211863365694
EALEAARI	8	Unmodified	_EALEAARI_					0	0	0		ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.7455139160156	2	436.745442	871.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.01	1	36.096	35.596	36.596	0.08625								0	0	0	0.16508	1	7264	7264		49.933	0	1				6459	4761	3290	3290	8973	8973					0.03545211863365694
EALEILSAI	9	Unmodified	_EALEILSAI_					0	0	0		ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5;GBP7|p.Q320Lfs*2|1|0.46|ENSG00000213512|chr1:89149484-89149485|CT/-|frameshift_variant;ENSG00000213512|ENST00000294671|GBP7	ENSG00000154451|ENST00000370459|GBP5;ENSG00000213512|ENST00000294671|GBP7	ENSG00000154451|ENST00000370459|GBP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7762451171875	2	479.776408	957.538263	0.35299	0.00016936	1.2354	0.00059274	1.5884	0.00076209	479.776197939638	82.797	0.99129	82.797	82.287	83.279	0					51	37	2	0	0	0	0.051692	1	21629	21629		52.268	12.311	1	205070			6460	5130;8348	3291	3291	8974	8974					0.057795184918632
EALEILSAI	9	Unmodified	_EALEILSAI_					0	0	0		ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5;GBP7|p.Q320Lfs*2|1|0.46|ENSG00000213512|chr1:89149484-89149485|CT/-|frameshift_variant;ENSG00000213512|ENST00000294671|GBP7	ENSG00000154451|ENST00000370459|GBP5;ENSG00000213512|ENST00000294671|GBP7	ENSG00000154451|ENST00000370459|GBP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.77606201171875	2	479.776408	957.538263	0.40021	0.00019201	1.5779	0.00075705	1.9781	0.00094906	479.7762488184299	82.889	0.87902	82.868	82.278	83.157	-0.020584					55	34	2	0	0	0	0.10135	1	21645	21645		52.268	12.311	1	241590			6461	5130;8348	3291	3291	8975	8975					0.057795184918632
EALEKSPK	8	Unmodified	_EALEKSPK_					0	0	0			REV__SDAD1|p.E120Nfs*23|1|0.27|ENSG00000198301|chr4:75977693-75977693|C/-|frameshift_variant	REV__SDAD1|p.E120Nfs*23|1|0.27|ENSG00000198301|chr4:75977693-75977693|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7846984863281	2	451.2531	900.491647	0.42048	0.00018974	-0.84972	-0.00038344	-0.42924	-0.00019369	451.25267862974516	20.004	0.41307	19.949	19.762	20.175	-0.055693					20	14	2	0	0	0	0.34367	1	2355	2355		4.3292	1.7518	1	87568	+		6462	18816	3292	3292	8976	8976					0.03742078660570769
EALFGLPVL	9	Unmodified	_EALFGLPVL_					0	0	0			REV__ENST00000280969.9_1_5:162930392-162940570:+|nuORF	REV__ENST00000280969.9_1_5:162930392-162940570:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7840270996094	2	479.784036	957.553519	0.29021	0.00013924	0.385	0.00018472	0.67521	0.00032395	479.7839791900532	89.135	0.86704	89.135	88.844	89.711	0					99	46	4	0	0	0	0.072844	2	23536	23536;23626		44.407	4.4497	1	1465900	+		6463	19706	3293	3293	8977;8978	8977					0.07304430079705071
EALFGLPVL	9	Unmodified	_EALFGLPVL_					0	0	0			REV__ENST00000280969.9_1_5:162930392-162940570:+|nuORF	REV__ENST00000280969.9_1_5:162930392-162940570:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7842102050781	2	479.784036	957.553519	0.32019	0.00015362	0.42116	0.00020207	0.74135	0.00035569	479.7839907932382	88.989	0.78772	89.08	88.809	89.596	0.090569					99	39	4	0	0	0	0.072844	1	23489	23489		44.407	4.4497	1	1213900	+		6464	19706	3293	3293	8979	8979					0.07304430079705071
EALFGLPVL	9	Unmodified	_EALFGLPVL_					0	0	0			REV__ENST00000280969.9_1_5:162930392-162940570:+|nuORF	REV__ENST00000280969.9_1_5:162930392-162940570:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.78424072265625	2	479.784036	957.553519	0.35602	0.00017081	0.27076	0.00012991	0.62678	0.00030072	479.7839487147861	89.113	0.94425	89.113	88.78	89.724	-0.00080872					100	52	3	0	0	0	0.11517	1	23644	23644		36.044	3.7387	1	1620200	+		6465	19706	3293	3293	8980	8980					0.07304430079705071
EALIPVQLL	9	Unmodified	_EALIPVQLL_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000074370|Q93084-4|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.747802734375	2	498.310418	994.606283	0.55255	0.00027534	-0.7294	-0.00036347	-0.17684	-8.8123E-05	498.3100714150699	83.616	0.13002	83.693	83.568	83.698	0.077095					6	4	2	0	0	0	0.25879	1	21852	21852		4.756	0	1	65788			6466	1020	3294	3294	8981	8981					0.1087638814251477
EALIRTCLL	9	Unmodified	_EALIRTCLL_					0	0	0		ENSG00000135821|ENST00000331872|GLUL;ENST00000324731.7_1_9:34917810-34918290:+|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.3240356445312	2	516.299527	1030.5845	0.84086	0.00043413	0.026095	1.3473E-05	0.86695	0.00044761	516.2977697269386	56.287	1.6371	56.268	55.671	57.308	-0.019081					161	59	5	0	0	0	0.20626	1	13598	13598		22.736	8.1546	1	7617400			6467	3907	3295	3295	8982	8982					0.07043260122304673
EALKPNVNV	9	Unmodified	_EALKPNVNV_					0	0	0		ENSG00000133812|ENST00000256190|SBF2	ENSG00000133812|ENST00000256190|SBF2	ENSG00000133812|ENST00000256190|SBF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2802734375	2	492.279649	982.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.965	1	81.03	80.53	81.53	0.065094								0	0	0	0.24446	1	21058	21058		5.2969	0	1				6468	3731	3296	3296	8983	8983					0.05277456443241135
EALLVKLSKIL	11	Unmodified	_EALLVKLSKIL_					0	0	0			REV__nc|ENSG00000173093|Q8NA47-2|CCDC63	REV__nc|ENSG00000173093|Q8NA47-2|CCDC63	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.56085205078125	3	409.607596	1225.80096	0.060656	2.4845E-05	0.75117	0.00030768	0.81182	0.00033253	409.60789594410153	59.406	1.1695	59.497	58.708	59.878	0.091305					65	41	2	0	0	0	0.3325	1	14574	14574		1.0136	0	1	259820	+		6469	17758	3297	3297	8984	8984					0.19709139227666128
EALPHPSATV	10	Unmodified	_EALPHPSATV_					0	0	0			REV__ENST00000457174.1_2_7:4917786-4921787:-|nuORF	REV__ENST00000457174.1_2_7:4917786-4921787:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.7959899902344	2	511.269281	1020.52401	0.58519	0.00029919	-0.62207	-0.00031805	-0.036886	-1.8858E-05	511.268942903775	47.356	0.55154	47.356	47.162	47.714	0					27	19	2	0	0	0	0.31039	1	10693	10693		13.042	0	1	130040	+		6470	21179	3298	3298	8985	8985					0.014568660635632114
EALRLFQV	8	Unmodified	_EALRLFQV_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF;CAMK1D-MCM5|1|fusion	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2854309082031	2	488.284734	974.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.167	1	61.167	60.667	61.667	0								0	0	0	0.22807	1	15007	15007		39.957	7.6518	1				6471	1562	3299	3299	8986	8986					0.06662064168483539
EALSKLMR	8	Unmodified	_EALSKLMR_					0	0	0			REV__ENSG00000262655|ENST00000576479|SPON1	REV__ENSG00000262655|ENST00000576479|SPON1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.270263671875	2	474.27077	946.526987	0.2857	0.0001355	-0.58716	-0.00027847	-0.30146	-0.00014297	474.2704106555813	16.92	0.88548	16.858	16.526	17.412	-0.062534					73	31	4	0	0	0	0.44569	1	1570	1570		7.2892	7.2892	1	730550	+		6472	19290	3300	3300	8987	8987					0.05158417916743474
EALWHYFS	8	Unmodified	_EALWHYFS_					0	0	0		ENST00000216277.12_1_14:96968904-96986484:+|nuORF	ENST00000216277.12_1_14:96968904-96986484:+|nuORF	ENST00000216277.12_1_14:96968904-96986484:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3043823242188	2	526.745442	1051.47633	0.40621	0.00021397	-0.99133	-0.00052218	-0.58513	-0.00030821	526.7450010288634	24.101	0.62833	24.101	23.857	24.486	0					28	21	2	0	0	0	0.34337	1	3646	3646		5.2307	0	1	64840			6473	8817	3301	3301	8988	8988					-0.04734788136624957
EALWHYFS	8	Unmodified	_EALWHYFS_					0	0	0		ENST00000216277.12_1_14:96968904-96986484:+|nuORF	ENST00000216277.12_1_14:96968904-96986484:+|nuORF	ENST00000216277.12_1_14:96968904-96986484:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3052978515625	2	526.745442	1051.47633	0.44607	0.00023497	-0.8897	-0.00046865	-0.44363	-0.00023368	526.7452241789379	24.228	0.8534	24.155	23.821	24.674	-0.072559					33	28	2	0	0	0	0.34337	1	3691	3691		5.2307	0	1	80494			6474	8817	3301	3301	8989	8989					-0.04734788136624957
EAMEDFREKI	10	Unmodified	_EAMEDFREKI_					0	0	0		ENST00000488907.5_1_2:97276365-97278231:-|nuORF;nc|ENSG00000114982|Q9P2N6-8|KANSL3;ENST00000487070.5_1_2:97267510-97285240:-|nuORF;ENST00000597150.5_1_2:97261350-97297069:-|nuORF;nc|ENSG00000114982|Q9P2N6-6|KANSL3;ENST00000447759.5_3_2:97261350-97293793:-|nuORF;nc|ENSG00000114982|Q9P2N6-2|KANSL3;nc|ENSG00000114982|Q9P2N6-5|KANSL3;nc|ENSG00000114982|Q9P2N6-4|KANSL3;ENSG00000114982|ENST00000431828|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3	ENST00000488907.5_1_2:97276365-97278231:-|nuORF	ENST00000488907.5_1_2:97276365-97278231:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3029174804688	2	634.302995	1266.59144	0.58116	0.00036863	0.073036	4.6327E-05	0.6542	0.00041496	634.303096226877	56.707	1.9479	56.785	56.485	58.433	0.078674					173	71	5	0	0	0	0.37751	1	13975	13975		7.609	0	1	11522000			6475	2599	3302	3302	8990	8990					-0.031194717877951916
EANGEVLCTV	10	Unmodified	_EANGEVLCTV_					0	0	0		ENSG00000188730|ENST00000340652|VWC2	ENSG00000188730|ENST00000340652|VWC2	ENSG00000188730|ENST00000340652|VWC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.31689453125	2	517.744782	1033.47501	0.32246	0.00016695	-0.8483	-0.0004392	-0.52584	-0.00027225	517.7442029133217	79.82	0.65831	79.791	79.544	80.202	-0.028923					51	23	3	0	0	0	0.30978	1	20732	20732		19.362	2.249	1	190750			6476	7769	3303	3303	8991	8991					-0.04038790287700067
EAPEEGQSESR	11	Unmodified	_EAPEEGQSESR_					0	0	0			REV__nc|ENSG00000160310|P55345-6|PRMT2	REV__nc|ENSG00000160310|P55345-6|PRMT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.9031677246094	3	406.845951	1217.51602	-0.22575	-9.1847E-05	3.6951	0.0015033	3.4693	0.0014115	407.18176055647706	25.72	0.2355	25.72	25.533	25.769	0					9	7	2	0	0	0	0.33037	1	4115	4115		0.92553	0	1	36211	+		6477	16895	3304	3304	8992	8992					-0.08403357714496451
EAPEEGQSESR	11	Unmodified	_EAPEEGQSESR_					0	0	0			REV__nc|ENSG00000160310|P55345-6|PRMT2	REV__nc|ENSG00000160310|P55345-6|PRMT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9031677246094	3	406.845951	1217.51602	-0.25972	-0.00010567	4.184	0.0017022	3.9243	0.0015966	407.1821545020602	25.714	0.08733	25.692	25.635	25.722	-0.022238					4	2	2	0	0	0	0.33198	1	4121	4121		2.084	1.4571	1	10821	+		6478	16895	3304	3304	8993	8993					-0.08403357714496451
EAPLLIRPY	9	Unmodified	_EAPLLIRPY_					0	0	0		ENSG00000156222|ENST00000394573|SLC28A1;chr15:84924110-84943445|494|12.79|0.3|5.4|+|ENST00000538177|SLC28A1,SLC28A1;ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000156222|ENST00000394573|SLC28A1;ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000156222|ENST00000394573|SLC28A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7653198242188	2	536.313492	1070.61243	-0.59772	-0.00032057	3.1764	0.0017036	2.5787	0.001383	536.3149138758795	34.985	0.30212	35.063	34.893	35.195	0.077377					14	10	2	0	0	0	0.25622	1	6923	6923		7.2892	1.5288	1	98081			6479	5225;4089	3305	3305	8994	8994					0.07994906374028687
EAPLVGSPI	9	Unmodified	_EAPLVGSPI_					0	0	0		ENST00000572255.5_1_16:11669328-11669439:-|nuORF	ENST00000572255.5_1_16:11669328-11669439:-|nuORF	ENST00000572255.5_1_16:11669328-11669439:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.75018310546875	2	441.750193	881.485833	0.047739	2.1089E-05	0.097777	4.3193E-05	0.14552	6.4282E-05	441.7500932760752	52.266	1.3263	52.265	51.848	53.175	-0.00081253					80	48	3	0	0	0	0.17611	1	12304	12304		26.884	9.9414	1	878280			6480	12028	3306	3306	8995	8995					0.04034980148901468
EAPSLPAHPA	10	Unmodified	_EAPSLPAHPA_					0	0	0		ENST00000359015.4_1_6:137113538-137113637:-|nuORF	ENST00000359015.4_1_6:137113538-137113637:-|nuORF	ENST00000359015.4_1_6:137113538-137113637:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2669677734375	2	495.256174	988.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.625	1	16.563	16.063	17.063	-0.062534								0	0	0	0.37664	1	1383	1383		3.5965	0.70727	1				6481	9657	3307	3307	8996	8996					0.003085968920800042
EARAEPKL	8	Unmodified	_EARAEPKL_					0	0	0		ENST00000255198.2_2_5:76372666-76372996:-|nuORF	ENST00000255198.2_2_5:76372666-76372996:-|nuORF	ENST00000255198.2_2_5:76372666-76372996:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.94189453125	2	457.258717	912.50288	0.33041	0.00015108	-0.95473	-0.00043656	-0.62432	-0.00028548	457.2581837198286	37.742	0.31052	37.742	37.616	37.926	0					15	10	2	0	0	0	0.34272	1	7847	7847		7.9102	0.62092	1	125450			6482	8921	3308	3308	8997	8997					0.04312900754700877
EASAAQISAK	10	Unmodified	_EASAAQISAK_					0	0	0			REV__ENSG00000067334|ENST00000436063|DNTTIP2	REV__ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7851867675781	2	488.258914	974.503274	0.5818	0.00028407	-0.79317	-0.00038727	-0.21137	-0.0001032	488.25842149778833	20.546	0.53158	20.493	20.355	20.886	-0.052912					30	18	2	0	0	0	0.28645	1	2586	2586		27.223	3.4335	1	150100	+		6483	13690	3309	3309	8998	8998					0.015002756838953246
EASELDKNYSK	11	Unmodified	_EASELDKNYSK_					0	0	0			REV__ENSG00000108344|ENST00000264639|PSMD3	REV__ENSG00000108344|ENST00000264639|PSMD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3075561523438	2	642.309332	1282.60411	0.63989	0.00041101	-1.9738	-0.0012678	-1.3339	-0.00085681	642.3078992940516	44.763	0.56687	44.838	44.475	45.042	0.07505					35	20	2	0	0	0	0.35271	1	9915	9915		17.443	0.87677	1	284720	+		6484	14587	3310	3310	8999	8999					-0.02588737123892315
EASELDKNYSK	11	Unmodified	_EASELDKNYSK_					0	0	0			REV__ENSG00000108344|ENST00000264639|PSMD3	REV__ENSG00000108344|ENST00000264639|PSMD3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	642.309332	1282.60411	0.55202	0.00035457	-1.654	-0.0010624	-1.102	-0.00070782	642.3083246662388	44.96	0.52671	44.96	44.739	45.266	0	0.11059	0.00021703	NaN	17.443	35	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212050	+		6485	14587	3310	3310							-0.02588737123892315
EASELDKNYSK	11	Unmodified	_EASELDKNYSK_					0	0	0			REV__ENSG00000108344|ENST00000264639|PSMD3	REV__ENSG00000108344|ENST00000264639|PSMD3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	642.309332	1282.60411	0.59744	0.00038374	-2.0064	-0.0012887	-1.409	-0.000905	642.3078281098822	44.682	0.46565	44.751	44.513	44.979	0.068573	-0.098868	-0.00023569	NaN	17.443	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169680	+		6486	14587	3310	3310							-0.02588737123892315
EASLLLNAEG	10	Unmodified	_EASLLLNAEG_					0	0	0			REV__SOCS3|p.G100Afs*79|1|0.27|ENSG00000184557|chr17:78358797-78358797|C/-|frameshift_variant	REV__SOCS3|p.G100Afs*79|1|0.27|ENSG00000184557|chr17:78358797-78358797|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2768249511719	2	508.766571	1015.51859	0.52675	0.00026799	-1.9854	-0.0010101	-1.4587	-0.00074213	508.76556943766036	47.661	0.41051	47.708	47.456	47.866	0.04752					23	14	2	0	0	0	0.30586	1	10844	10844		13.906	2.2658	1	426740	+		6487	18320	3311	3311	9000	9000					0.011451424810957178
EASLPFIGW	9	Unmodified	_EASLPFIGW_					0	0	0		ENST00000473262.5_1_3:124802736-124896678:-|nuORF	ENST00000473262.5_1_3:124802736-124896678:-|nuORF	ENST00000473262.5_1_3:124802736-124896678:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2809753417969	2	510.263468	1018.51238	0.0069915	3.5675E-06	-0.95396	-0.00048677	-0.94697	-0.0004832	510.2630819427786	30.623	0.64354	30.65	30.25	30.893	0.027157					29	22	2	0	0	0	0.25879	1	5502	5502		4.756	0	1	152680			6488	10905	3312	3312	9001	9001					0.0038666904022193194
EASLPFIGW	9	Unmodified	_EASLPFIGW_					0	0	0		ENST00000473262.5_1_3:124802736-124896678:-|nuORF	ENST00000473262.5_1_3:124802736-124896678:-|nuORF	ENST00000473262.5_1_3:124802736-124896678:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	510.263468	1018.51238	0.36919	0.00018838	-0.75476	-0.00038513	-0.38557	-0.00019674	510.2630773561842	30.475	0.63393	30.475	30.255	30.889	0	-0.056631	7.4335E-05	NaN	4.756	30	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117280			6489	10905	3312	3312							0.0038666904022193194
EASLRQKL	8	Unmodified	_EASLRQKL_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.2534484863281	2	472.779816	943.545079	-0.0047776	-2.2587E-06	0.69474	0.00032846	0.68996	0.0003262	472.78008709941156	16.704	0.2755	16.59	16.448	16.723	-0.11434					17	9	2	0	0	0	0.34218	1	1440	1440		9.3474	0	1	90196			6490	2684	3313	3313	9002	9002					0.07104876163089102
EASLRQKL	8	Unmodified	_EASLRQKL_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.2536315917969	2	472.779816	943.545079	0.21714	0.00010266	0.69988	0.00033089	0.91702	0.00043355	472.7800761122228	16.638	0.34028	16.575	16.414	16.754	-0.062534					24	11	3	0	0	0	0.34046	1	1425	1425		9.3474	0	1	85194			6491	2684	3313	3313	9003	9003					0.07104876163089102
EASQELLR	8	Unmodified	_EASQELLR_					0	0	0			REV__ENSG00000169122|ENST00000519262|FAM110B	REV__ENSG00000169122|ENST00000519262|FAM110B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7288818359375	2	473.253631	944.49271	-0.015617	-7.3909E-06	0.88055	0.00041673	0.86494	0.00040933	473.2541895588334	22.961	0.42455	22.874	22.568	22.993	-0.087608					19	14	2	0	0	0	0.34353	1	3225	3225		4.756	0	1	24991	+		6492	17499	3314	3314	9004	9004					0.01824293029483215
EATEKFRSNIK	11	Unmodified	_EATEKFRSNIK_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.57403564453125	3	441.573614	1321.69901	-0.13205	-5.8308E-05	1.465	0.00064692	1.333	0.00058861	441.57432974560066	14.761	0.73471	14.761	14.365	15.1	0					51	25	4	0	0	0	0.37255	1	820	820		14.838	1.303	1	282330			6493	1483	3315	3315	9005	9005					0.051032411379537734
EATEKFRSNIK	11	Unmodified	_EATEKFRSNIK_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	441.573614	1321.69901	-0.14071	-6.2132E-05	1.268	0.0005599	1.1273	0.00049776	441.5741723476223	14.905	0.67574	14.795	14.362	15.038	-0.10981	-0.017106	-0.00041569	NaN	14.838	54	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317690			6494	1483	3315	3315							0.051032411379537734
EATEKFRSNIK	11	Unmodified	_EATEKFRSNIK_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	441.573614	1321.69901	-0.12327	-5.4432E-05	1.8844	0.00083211	1.7611	0.00077768	441.574410232232	14.945	0.42751	14.881	14.73	15.158	-0.064413	0.06842	0.00040095	NaN	14.838	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298860			6495	1483	3315	3315							0.051032411379537734
EATELLQNIR	10	Unmodified	_EATELLQNIR_					0	0	0		nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT	nc|ENSG00000122966|O14578-3|CIT	nc|ENSG00000122966|O14578-3|CIT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8243408203125	2	593.824952	1185.63535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.728	1	41.825	41.325	42.325	0.096626								0	0	0	0.37739	1	9014	9014		3.2813	0	1				6496	3081	3316	3316	9006	9006					0.04995880700835187
EATPVKANKA	10	Unmodified	_EATPVKANKA_					0	0	0		nc|ENSG00000134897|Q86UB2-2|BIVM;ENST00000490317.1_1_13:103473357-103492212:+|nuORF;ENSG00000134897|ENST00000257336|BIVM	nc|ENSG00000134897|Q86UB2-2|BIVM	nc|ENSG00000134897|Q86UB2-2|BIVM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.808837890625	2	514.790381	1027.56621	0.28296	0.00014567	0.65998	0.00033975	0.94294	0.00048542	514.7906140359652	24.614	0.47601	24.614	24.367	24.843	0					30	15	3	0	0	0	0.37133	1	3843	3843		8.7454	1.4562	1	68424			6497	3824	3317	3317	9007	9007					0.05352841471949432
EAVRRQLL	8	Unmodified	_EAVRRQLL_					0	0	0		ENST00000510336.5_1_5:140021201-140024680:+|nuORF;ENSG00000113119|ENST00000394671|TMCO6;nc|ENSG00000113119|Q96DC7-2|TMCO6	ENST00000510336.5_1_5:140021201-140024680:+|nuORF	ENST00000510336.5_1_5:140021201-140024680:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.27276611328125	2	492.801083	983.587613	0.27664	0.00013633	2.5921	0.0012774	2.8688	0.0014137	492.80213034696624	16.621	0.14113	16.621	16.491	16.632	0					6	4	2	0	0	0	0.344	1	1348	1348		2.5775	0	1	16160			6498	2474	3318	3318	9008	9008					0.09516271291329303
EAWVKRLQ	8	Unmodified	_EAWVKRLQ_					0	0	0			REV__CHUK|p.W511Gfs*46|1|0.28|ENSG00000213341|chr10:100202126-100202126|A/-|frameshift_variant	REV__CHUK|p.W511Gfs*46|1|0.28|ENSG00000213341|chr10:100202126-100202126|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2368774414062	2	515.295633	1028.57671	0.42778	0.00022043	1.4587	0.00075167	1.8865	0.0009721	515.2963972547882	21.118	0.63246	21.118	20.912	21.545	0					47	21	3	0	0	0	0.34294	1	2693	2693		7.2892	0	1	127280	+		6499	13227	3319	3319	9009	9009					0.06356868917032443
EAYGFVARI	9	Unmodified	_EAYGFVARI_					0	0	0		ENSG00000110799|ENST00000261405|VWF;ENST00000321023.5_1_12:6204574-6232125:-|nuORF;nc|ENSG00000110799|P04275-2|VWF	ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2745361328125	2	513.274367	1024.53418	0.59874	0.00030732	-0.26277	-0.00013487	0.33597	0.00017244	513.2741802256404	54.386	0.86327	54.386	53.974	54.837	0					94	31	4	0	0	0	0.00011048	1	12925	12925		139.14	97.299	1	4642500			6500	2330	3320	3320	9010	9010					0.02289473788800933
EAYGFVARI	9	Unmodified	_EAYGFVARI_					0	0	0		ENSG00000110799|ENST00000261405|VWF;ENST00000321023.5_1_12:6204574-6232125:-|nuORF;nc|ENSG00000110799|P04275-2|VWF	ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2744750976562	2	513.274367	1024.53418	0.5017	0.00025751	-0.13927	-7.1486E-05	0.36242	0.00018602	513.2742428004768	54.324	0.77148	54.387	54.063	54.834	0.063202					87	28	4	0	0	0	0.00070271	1	12914	12914		126.57	84.726	1	4589300			6501	2330	3320	3320	9011	9011					0.02289473788800933
EAYGFVARI	9	Unmodified	_EAYGFVARI_					0	0	0		ENSG00000110799|ENST00000261405|VWF;ENST00000321023.5_1_12:6204574-6232125:-|nuORF;nc|ENSG00000110799|P04275-2|VWF	ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2745361328125	2	513.274367	1024.53418	0.4744	0.0002435	-0.122	-6.2619E-05	0.3524	0.00018088	513.2742846521616	54.587	0.78065	54.571	54.17	54.95	-0.015919					86	27	4	0	0	0	0.00011048	1	12974	12974		139.14	97.299	1	4714700			6502	2330	3320	3320	9012	9012					0.02289473788800933
EAYLGKKV	8	Unmodified	_EAYLGKKV_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2647399902344	2	454.26601	906.517468	0.24684	0.00011213	-0.98624	-0.00044802	-0.7394	-0.00033589	454.26543176759384	20.662	1.0638	20.662	20.423	21.487	0					78	36	3	0	0	0	0.027083	1	2578	2578		92.491	37.718	1	976320			6503	623	3321	3321	9013	9013					0.06046972902856851
EAYLGKKV	8	Unmodified	_EAYLGKKV_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	454.26601	906.517468	0.47489	0.00021573	-1.1252	-0.00051113	-0.65028	-0.0002954	454.26540695616444	20.85	1.0226	20.74	20.495	21.518	-0.11003	0.039335	-1.1362E-05	NaN	92.491	85	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1150200			6504	623	3321	3321							0.06046972902856851
EAYLGKKV	8	Unmodified	_EAYLGKKV_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	454.26601	906.517468	0.38163	0.00017336	-1.195	-0.00054285	-0.81337	-0.00036949	454.26533123283644	20.753	1.0719	20.7	20.472	21.544	-0.052912	-0.00057754	-7.48E-05	NaN	92.491	84	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1038800			6505	623	3321	3321							0.06046972902856851
EAYLGKTV	8	Unmodified	_EAYLGKTV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.742431640625	2	440.742368	879.470183	0.23383	0.00010306	0.0048371	2.1319E-06	0.23867	0.00010519	440.7423235857511	31.959	1.5401	31.959	31.745	33.285	0					110	54	3	0	0	0	0.0017594	2	6056	6005;6056		134.3	15.401	1	3478500			6506	2285	3322	3322	9014;9015	9015					0.02562693631853108
EAYLGKTV	8	Unmodified	_EAYLGKTV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.742431640625	2	440.742368	879.470183	0.25979	0.0001145	0.0058833	2.593E-06	0.26567	0.00011709	440.7423166070676	31.907	1.6455	31.95	31.683	33.329	0.042364					105	58	3	0	0	0	0.0017594	2	6038	5989;6038		134.3	15.401	1	3769600			6507	2285	3322	3322	9016;9017	9017					0.02562693631853108
EAYLGKTV	8	Unmodified	_EAYLGKTV_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000456928.2_1_12:4206979-4207195:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.742431640625	2	440.742368	879.470183	0.187	8.2421E-05	0.026518	1.1688E-05	0.21352	9.4109E-05	440.7423266919494	31.885	1.4604	31.926	31.672	33.132	0.040991					104	52	3	0	0	0	0.0077181	2	5988	5988;6038		122.18	14.992	1	3780400			6508	2285	3322	3322	9018;9019	9018					0.02562693631853108
EAYLSRLGV	9	Unmodified	_EAYLSRLGV_					0	0	0		nc|ENSG00000114491|P11172-4|UMPS;nc|ENSG00000114491|P11172-2|UMPS;nc|ENSG00000114491|P11172-3|UMPS;ENSG00000114491|ENST00000232607|UMPS	nc|ENSG00000114491|P11172-4|UMPS	nc|ENSG00000114491|P11172-4|UMPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2800598144531	2	504.279649	1006.54475	0.36964	0.0001864	0.16979	8.5621E-05	0.53943	0.00027202	504.27964625001704	52.457	0.72099	52.457	52.211	52.932	0					43	25	2	0	0	0	2.5511E-05	1	12307	12307		152.89	74.737	1	1701800			6509	2570	3323	3323	9020	9020					0.04173456443231771
EAYLSRLGV	9	Unmodified	_EAYLSRLGV_					0	0	0		nc|ENSG00000114491|P11172-4|UMPS;nc|ENSG00000114491|P11172-2|UMPS;nc|ENSG00000114491|P11172-3|UMPS;ENSG00000114491|ENST00000232607|UMPS	nc|ENSG00000114491|P11172-4|UMPS	nc|ENSG00000114491|P11172-4|UMPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.27996826171875	2	504.279649	1006.54475	0.2418	0.00012194	0.34711	0.00017504	0.58891	0.00029698	504.2797236136605	52.584	0.79239	52.583	52.358	53.151	-0.00081253					48	28	2	0	0	0	0.0016712	1	12386	12386		114.2	64.269	1	1676800			6510	2570	3323	3323	9021	9021					0.04173456443231771
EAYRPVGVVDF	11	Unmodified	_EAYRPVGVVDF_					0	0	0		ENSG00000132744|ENST00000255082|ACY3	ENSG00000132744|ENST00000255082|ACY3	ENSG00000132744|ENST00000255082|ACY3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.2431640625	3	417.883789	1250.62954	0.33732	0.00014096	-2.7236	-0.0011382	-2.3863	-0.00099721	417.8826298582906	35.974	0.35143	36.06	35.869	36.22	0.08625					21	12	2	0	0	0	0.33189	1	7198	7198		5.8681	2.2811	1	176680			6511	3662	3324	3324	9022	9022					0.014247821891785861
EAYTHAQI	8	Unmodified	_EAYTHAQI_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.Y1107Ifs*12|1|0.29|ENSG00000175054|chr3:142547763-142547763|A/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.727294921875	2	466.727249	931.439946	-0.22551	-0.00010525	0.53454	0.00024948	0.30903	0.00014423	466.72734052881003	28.424	0.5218	28.424	28.207	28.729	0					29	17	2	0	0	0	0.28696	1	4938	4938		32.305	12.866	1	200540			6512	6835	3325	3325	9023	9023					-0.028516650333358484
EAYVQKLV	8	Unmodified	_EAYVQKLV_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B;ENSG00000183508|ENST00000369448|TENT5C	ENSG00000158246|ENST00000289166|TENT5B;ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.7984924316406	2	475.271293	948.528032	-0.11558	-5.4934E-05	0.58965	0.00028024	0.47406	0.00022531	475.27145636261463	42.302	0.42998	42.302	42.113	42.543	0					23	15	2	0	0	0	0.2646	1	9210	9210		46.021	17.534	1	381570			6513	5349;7372	3326	3326	9024	9024					0.05170955557287016
EAYVQKLV	8	Unmodified	_EAYVQKLV_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B;ENSG00000183508|ENST00000369448|TENT5C	ENSG00000158246|ENST00000289166|TENT5B;ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.94561767578125	2	475.271293	948.528032	0.38362	0.00018232	-0.028016	-1.3315E-05	0.3556	0.00016901	475.2711890851819	42.139	0.45273	42.224	42.009	42.462	0.085197					24	15	2	0	0	0	0.32435	1	9162	9162		23.148	7.3012	1	239620			6514	5349;7372	3326	3326	9025	9025					0.05170955557287016
EAYVQKMV	8	Oxidation (M)	_EAYVQKM(Oxidation (M))V_		EAYVQKM(1)V		EAYVQKM(42)V	0	0	1		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2469482421875	2	492.24696	982.479368	0.28094	0.00013829	-0.069492	-3.4207E-05	0.21145	0.00010409	492.24684086561825	24.245	0.76289	24.245	23.973	24.736	0					49	25	3	0	0	0	0.27344	1	3694	3694		42.095	21.641	1	218320			6515	2462	3327	3327	9026	9026		300			-0.012572810741062312
EAYVQKMV	8	Oxidation (M)	_EAYVQKM(Oxidation (M))V_		EAYVQKM(1)V		EAYVQKM(82)V	0	0	1		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.24700927734375	2	492.24696	982.479368	0.3774	0.00018578	-0.058461	-2.8777E-05	0.31894	0.000157	492.2468956438912	24.382	0.52647	24.31	24.085	24.612	-0.072559					45	17	3	0	0	0	0.04227	1	3743	3743		81.89	45.763	1	255400			6516	2462	3327	3327	9027	9027		300			-0.012572810741062312
EAYVQKMV	8	Oxidation (M)	_EAYVQKM(Oxidation (M))V_		EAYVQKM(1)V		EAYVQKM(96)V	0	0	1		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2470397949219	2	492.24696	982.479368	0.24215	0.0001192	-0.10961	-5.3953E-05	0.13254	6.5245E-05	492.246858821165	24.367	0.51413	24.328	24.049	24.563	-0.038927					40	17	3	0	0	0	0.024266	1	3727	3727		96.285	65.648	1	291300			6517	2462	3327	3327	9028	9028		300			-0.012572810741062312
ECAPLSWLFR	10	Unmodified	_ECAPLSWLFR_					0	0	0			REV__ENSG00000170577|ENST00000303077|SIX2	REV__ENSG00000170577|ENST00000303077|SIX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.23870849609375	3	407.874348	1220.60121	-0.27248	-0.00011114	1.2067	0.0004922	0.93426	0.00038106	407.875325736338	14.672	0.20081	14.567	14.422	14.623	-0.10466					6	5	2	0	0	0	0.32162	1	787	787		0.77653	0	1	23038	+		6518	17586	3328	3328	9029	9029					-0.000262389917679684
ECFGNQPN	8	Unmodified	_ECFGNQPN_					0	0	0			REV__ENSG00000185559|ENST00000341267|DLK1	REV__ENSG00000185559|ENST00000341267|DLK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.68231201171875	2	454.681985	907.349416	0.14812	6.7345E-05	0.38934	0.00017702	0.53745	0.00024437	454.68210470724017	61.01	0.75824	61.107	60.807	61.566	0.096985					38	27	2	0	0	0	0.45307	1	14942	14942		4.756	0.42677	1	1680800	+		6519	18390	3329	3329	9030	9030					-0.10796457353262667
ECIYFILYL	9	Unmodified	_ECIYFILYL_					0	0	0			REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.8059692382812	2	588.804111	1175.59367	0.048773	2.8718E-05	3.4226	0.0020152	3.4713	0.0020439	588.8055598996023	12.471	0.28708	12.374	12.206	12.493	-0.096607					15	9	3	0	0	0	0.35512	1	152	152		0.6015	0.076735	1	23830	+		6520	17695	3330	3330	9031	9031					0.0128960868798913
ECKDWFLRAP	10	Unmodified	_ECKDWFLRAP_					0	0	0		ENSG00000189377|ENST00000601181|CXCL17	ENSG00000189377|ENST00000601181|CXCL17	ENSG00000189377|ENST00000601181|CXCL17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.2097473144531	3	422.209619	1263.60703	-0.34122	-0.00014406	0.95845	0.00040467	0.61724	0.0002606	422.2099882381432	13.037	0.43175	12.938	12.785	13.217	-0.099291					36	14	4	0	0	0	0.41469	1	332	332		0.77653	0.14971	1	67565			6521	7816	3331	3331	9032	9032					-0.01423140480096663
ECLFIAINGDH	11	Unmodified	_ECLFIAINGDH_					0	0	0		ENST00000474873.5_1_10:100195027-100205113:-|nuORF;ENST00000467246.5_1_10:100191016-100205113:-|nuORF;nc|ENSG00000289758|Q92902-3|HPS1;nc|ENSG00000289758|Q92902-2|HPS1;nc|ENSG00000289758|Q92902-4|HPS1;ENSG00000107521|ENST00000361490|HPS1	ENST00000474873.5_1_10:100195027-100205113:-|nuORF	ENST00000474873.5_1_10:100195027-100205113:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.1980285644531	3	411.197379	1230.57031	-0.1017	-4.1818E-05	3.5864	0.0014747	3.4847	0.0014329	411.1997606663349	76.384	1.1307	76.384	76.049	77.179	0					103	40	4	0	0	0	0.23019	1	19656	19656		23.016	7.277	1	636580			6522	2129	3332	3332	9033	9033					-0.035754370966515125
ECLFIAINGDH	11	Unmodified	_ECLFIAINGDH_					0	0	0		ENST00000474873.5_1_10:100195027-100205113:-|nuORF;ENST00000467246.5_1_10:100191016-100205113:-|nuORF;nc|ENSG00000289758|Q92902-3|HPS1;nc|ENSG00000289758|Q92902-2|HPS1;nc|ENSG00000289758|Q92902-4|HPS1;ENSG00000107521|ENST00000361490|HPS1	ENST00000474873.5_1_10:100195027-100205113:-|nuORF	ENST00000474873.5_1_10:100195027-100205113:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.1971740722656	3	411.197379	1230.57031	0.032407	1.3326E-05	2.7779	0.0011423	2.8103	0.0011556	411.19913900959745	76.3	1.1505	76.353	76.161	77.312	0.053421					113	40	4	0	0	0	0.15851	1	19629	19629		28.181	4.3802	1	797870			6523	2129	3332	3332	9034	9034					-0.035754370966515125
ECLQVPITKW	10	Unmodified	_ECLQVPITKW_					0	0	0			REV__ENST00000598278.5_1_19:16742403-16758047:-|nuORF	REV__ENST00000598278.5_1_19:16742403-16758047:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.7852478027344	3	406.218003	1215.63218	-0.16529	-6.7144E-05	-1.342	-0.00054514	-1.5073	-0.00061228	406.217094358827	26.964	1.031	26.964	26.558	27.589	0					59	35	2	0	0	0	0.31691	1	4467	4467		5.4027	0	1	156930	+		6524	21273	3333	3333	9035	9035					0.03298914322476776
ECLSNKEKILK	11	Unmodified	_ECLSNKEKILK_					0	0	0		ENSG00000100296|ENST00000490103|THOC5;ENST00000488052.1_1_22:29927628-29932726:-|nuORF;ENST00000475187.5_1_22:29932576-29945100:-|nuORF;ENST00000358079.8_1_22:29924947-29938918:-|nuORF	ENSG00000100296|ENST00000490103|THOC5	ENSG00000100296|ENST00000490103|THOC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.5793762207031	3	435.579601	1303.71697	-0.1912	-8.3282E-05	-0.47208	-0.00020563	-0.66327	-0.00028891	435.5794436992208	22.278	0.71813	22.278	22.045	22.763	0					68	24	4	0	0	0	0.31096	1	3095	3095		21.241	2.0974	1	478390			6525	1561	3334	3334	9036	9036					0.07726240068427614
ECLSNKEKILK	11	Unmodified	_ECLSNKEKILK_					0	0	0		ENSG00000100296|ENST00000490103|THOC5;ENST00000488052.1_1_22:29927628-29932726:-|nuORF;ENST00000475187.5_1_22:29932576-29945100:-|nuORF;ENST00000358079.8_1_22:29924947-29938918:-|nuORF	ENSG00000100296|ENST00000490103|THOC5	ENSG00000100296|ENST00000490103|THOC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.5793151855469	3	435.579601	1303.71697	-0.10317	-4.494E-05	-0.53134	-0.00023144	-0.63451	-0.00027638	435.5793778703159	22.37	0.86363	22.27	21.944	22.807	-0.10034					85	31	4	0	0	0	0.36266	1	3123	3123		16.137	3.2085	1	490570			6526	1561	3334	3334	9037	9037					0.07726240068427614
ECPLPPLPLHT	11	Unmodified	_ECPLPPLPLHT_					0	0	0		ENST00000217246.8_1_20:13976200-13976362:+|nuORF	ENST00000217246.8_1_20:13976200-13976362:+|nuORF	ENST00000217246.8_1_20:13976200-13976362:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8475952148438	2	608.823366	1215.63218	0.55983	0.00034084	-4.2694	-0.0025993	-3.7096	-0.0022585	609.3232922622865	85.565	0.42762	85.648	85.486	85.913	0.083481					24	15	2	0	0	0	0.33119	1	22434	22434		5.7319	1.7875	1	98137			6527	8824	3335	3335	9038	9038					0.03298914322476776
ECQKCRKSF	9	Unmodified	_ECQKCRKSF_					0	0	0		nc|ENSG00000197841|Q2M3W8-2|ZNF181;nc|ENSG00000197841|Q2M3W8-3|ZNF181;ENSG00000197841|ENST00000492450|ZNF181	nc|ENSG00000197841|Q2M3W8-2|ZNF181	nc|ENSG00000197841|Q2M3W8-2|ZNF181	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.3323364257812	2	564.768068	1127.52158	0.31787	0.00017952	0.16023	9.0494E-05	0.4781	0.00027002	565.2693767690007	65.588	1.8728	65.577	64.947	66.819	-0.01133					122	68	3	0	0	0	0.25066	1	16587	16587		11.64	11.64	1	495590			6528	8003	3336	3336	9039	9039					-0.037076289373999316
ECQPVDCYDF	10	Unmodified	_ECQPVDCYDF_					0	0	0			REV__CON__P06868	REV__CON__P06868	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.7267456054688	2	609.725732	1217.43691	0.3737	0.00022785	0.30008	0.00018297	0.67377	0.00041082	609.7260158550919	31.693	0.96567	31.693	31.45	32.415	0					64	34	2	0	0	0	0.40106	2	5985	5985;6069		3.2813	0.28607	1	484020	+	+	6529	13253	3337	3337	9040;9041	9040					-0.1631104426469392
ECQVTFIHLKC	11	Unmodified	_ECQVTFIHLKC_					0	0	0		ENSG00000146197|ENST00000274938|SCUBE3;nc|ENSG00000146197|Q8IX30-2|SCUBE3	ENSG00000146197|ENST00000274938|SCUBE3	ENSG00000146197|ENST00000274938|SCUBE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.882080078125	3	440.886148	1319.63661	-0.27226	-0.00012003	-0.42387	-0.00018688	-0.69612	-0.00030691	440.8858455690722	13.843	0.69858	13.739	13.513	14.212	-0.10466					67	24	4	0	0	0	0.46554	1	637	637		2.6312	0	1	716750			6530	4697	3338	3338	9042	9042					-0.010419445262641602
ECVARWFD	8	Unmodified	_ECVARWFD_					0	0	0			REV__ENSG00000135148|ENST00000412615|TRAFD1	REV__ENSG00000135148|ENST00000412615|TRAFD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2415161132812	2	513.229102	1024.44365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.291	1	23.246	22.746	23.746	-0.044867								0	0	0	0.36169	1	3401	3401		9.3474	2.0582	1		+		6531	15725	3339	3339	9043	9043					-0.06759318531123881
ECYCLSPVL	9	Unmodified	_ECYCLSPVL_					0	0	0			REV__chr11:103391535-103399663|312|10.06|0.06|7.28|+|0|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|7	REV__chr11:103391535-103399663|312|10.06|0.06|7.28|+|0|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2985229492188	2	513.735371	1025.45619	0.39461	0.00020272	0.0038344	1.9699E-06	0.39844	0.00020469	513.7352046317825	85.974	0.80241	85.965	85.699	86.501	-0.0090027					49	30	2	0	0	0	0.25066	1	22654	22654		11.64	2.2929	1	226920	+		6532	13169	3340	3340	9044	9044					-0.05552043183092792
EDCLNRLLMI	10	Unmodified	_EDCLNRLLMI_					0	0	0		nc|ENSG00000181555|Q9BYW2-3|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2;SETD2|p.P1822Qfs*16|1|0.27|ENSG00000181555|chr3:47084315-47084315|G/-|frameshift_variant;SETD2|p.K1863Sfs*2|1|0.27|ENSG00000181555|chr3:47084194-47084194|G/-|frameshift_variant;SETD2|p.D2004Ifs*2|1|0.14|ENSG00000181555|chr3:47083770-47083770|C/-|frameshift_variant;SETD2|p.P2288Ifs*22|1|0.23|ENSG00000181555|chr3:47056922-47056923|-/AT|frameshift_variant;SETD2|p.T2372Sfs*54|1|0.42|ENSG00000181555|chr3:47042678-47042685|TTATTTGT/-|frameshift_variant;SETD2|p.D2504*|1|0.21|ENSG00000181555|chr3:47017657-47017661|AAGTC/-|frameshift_variant;SETD2|p.K2545*|1|0.19|ENSG00000181555|chr3:47017155-47017156|-/A|frameshift_variant;ENSG00000181555|ENST00000409792|SETD2	nc|ENSG00000181555|Q9BYW2-3|SETD2	nc|ENSG00000181555|Q9BYW2-3|SETD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.91522216796875	3	407.210631	1218.61006	-0.14101	-5.7421E-05	-4.3321	-0.0017641	-4.4731	-0.0018215	407.2088547225564	34.147	0.27869	34.213	34.047	34.326	0.0667					12	9	2	0	0	0	0.31942	1	6721	6721		6.1918	3.4567	1	53956			6533	7240	3341	3341	9045	9045					0.009503665824013297
EDDEEGLTF	9	Unmodified	_EDDEEGLTF_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7140502929688	2	527.714202	1053.41385	0.48667	0.00025682	-0.70434	-0.00037169	-0.21766	-0.00011486	527.7136640318855	79.982	0.66798	79.982	79.77	80.438	0					52	24	3	0	0	0	0.32733	2	20759	20759;20811		4.756	0	1	369800	+		6534	13517	3342	3342	9046;9047	9046					-0.11072023786118734
EDDEEGLTF	9	Unmodified	_EDDEEGLTF_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7139892578125	2	527.714202	1053.41385	0.41423	0.0002186	-0.57378	-0.00030279	-0.15955	-8.4197E-05	527.7137061716903	79.977	0.59252	80.038	79.774	80.366	0.061417					61	21	4	0	0	0	0.32733	1	20727	20727		4.756	4.756	1	390560	+		6535	13517	3342	3342	9048	9048					-0.11072023786118734
EDEDAGHLDEL	11	Unmodified	_EDEDAGHLDEL_					0	0	0			REV__ENST00000589152.5_1_19:1221859-1226643:+|nuORF	REV__ENST00000589152.5_1_19:1221859-1226643:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.760009765625	2	621.759672	1241.50479	0.10582	6.5794E-05	0.43666	0.0002715	0.54248	0.00033729	621.759785098253	57.335	0.52771	57.421	57.21	57.738	0.085621					38	18	3	0	0	0	0.39234	1	13882	13882		12.241	0.60036	1	793640	+		6536	14996	3343	3343	9049	9049					-0.10630179808663343
EDEGLGWLL	9	Unmodified	_EDEGLGWLL_					0	0	0			REV__ENST00000374148.1_1_10:50369150-50369267:-|nuORF	REV__ENST00000374148.1_1_10:50369150-50369267:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.5335693359375	2	516.25584	1030.49713	0.56403	0.00029118	0.38104	0.00019671	0.94507	0.0004879	516.2558971594119	56.496	0.41992	56.575	56.41	56.829	0.078674					20	15	2	0	0	0	0.24739	1	13548	13548		13.508	3.3245	1	140170	+		6537	20456	3344	3344	9050	9050					-0.016902425476018834
EDEIIVWHTVL	11	Unmodified	_EDEIIVWHTVL_					0	0	0		ENSG00000172901|ENST00000357872|LVRN	ENSG00000172901|ENST00000357872|LVRN	ENSG00000172901|ENST00000357872|LVRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.93267822265625	3	451.906482	1352.69762	0.27797	0.00012562	-3.462	-0.0015645	-3.184	-0.0014389	451.90437574008644	88.027	0.15231	88.024	87.934	88.086	-0.0028381					9	6	2	0	0	0	0.33202	1	23217	23217		1.3296	0.82369	1	56684			6538	6672	3345	3345	9051	9051					0.03537607049156577
EDGGGWWYNR	10	Unmodified	_EDGGGWWYNR_					0	0	0		ENSG00000171564|ENST00000302068|FGB;CON__P02676	ENSG00000171564|ENST00000302068|FGB	ENSG00000171564|ENST00000302068|FGB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.2618408203125	2	620.262519	1238.51048	0.15844	9.8274E-05	-1.0579	-0.00065618	-0.89947	-0.00055791	620.2618811624706	37.907	0.72498	38.005	37.712	38.437	0.097527					55	25	3	0	0	0	0.3641	1	7880	7880		10.074	0.6908	1	476690		+	6539	211	3346	3346	9052	9052					-0.09922991715689022
EDGGGWWYNR	10	Unmodified	_EDGGGWWYNR_					0	0	0		ENSG00000171564|ENST00000302068|FGB;CON__P02676	ENSG00000171564|ENST00000302068|FGB	ENSG00000171564|ENST00000302068|FGB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	620.262519	1238.51048	0.27021	0.0001676	-0.99839	-0.00061927	-0.72818	-0.00045166	620.2619035929538	38.14	0.61445	38.14	37.82	38.434	0	0.058086	3.4393E-05	NaN	10.074	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403550		+	6540	211	3346	3346							-0.09922991715689022
EDGGGWWYNR	10	Unmodified	_EDGGGWWYNR_					0	0	0		ENSG00000171564|ENST00000302068|FGB;CON__P02676	ENSG00000171564|ENST00000302068|FGB	ENSG00000171564|ENST00000302068|FGB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	620.262519	1238.51048	0.15844	9.8274E-05	-1.0579	-0.00065618	-0.89947	-0.00055791	620.2618811624706	37.907	0.72498	38.005	37.712	38.437	0.097527	-0.077217	-3.9441E-05	NaN	10.074	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476690		+	6541	211	3346	3346							-0.09922991715689022
EDIEAFEMME	10	Unmodified	_EDIEAFEMME_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.7754516601562	2	622.246497	1242.47844	0.013464	8.3781E-06	1.1377	0.00070791	1.1511	0.00071629	622.2471402169127	46.236	0.67417	46.296	46.043	46.717	0.059834					35	24	2	0	0	0	0.32033	1	10430	10430		3.5965	0.60125	1	341430			6542	2724	3347	3347	9053	9053					-0.13309908295968853
EDIEAFEMME	10	Unmodified	_EDIEAFEMME_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	622.246497	1242.47844	0.14757	9.1824E-05	1.2793	0.00079601	1.4268	0.00088784	622.2472518932949	46.565	0.43475	46.565	46.298	46.732	0	0.13432	8.0642E-05	NaN	3.5965	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213300			6543	2724	3347	3347							-0.13309908295968853
EDIPAPLNL	9	Unmodified	_EDIPAPLNL_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B;nc|ENSG00000038274|Q9NZL9-3|MAT2B;nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.78570556640625	2	491.266207	980.517862	0.46013	0.00022605	-0.31703	-0.00015575	0.14311	7.0303E-05	491.2659411290371	68.848	0.48406	68.92	68.806	69.29	0.071938					22	17	2	0	0	0	0.24688	1	17420	17420		14.838	0	1	95813			6544	588	3348	3348	9054	9054					0.02682347832023879
EDIPAPLNL	9	Unmodified	_EDIPAPLNL_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B;nc|ENSG00000038274|Q9NZL9-3|MAT2B;nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.266207	980.517862	0.33908	0.00016658	-2.5488	-0.0012522	-2.2098	-0.0010856	491.2661331922876	68.995	0.35983	68.976	68.766	69.126	-0.019157	0.02781	-0.0020719	NaN	14.838	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127920			6545	588	3348	3348							0.02682347832023879
EDLIQQRIEKH	11	Unmodified	_EDLIQQRIEKH_					0	0	0			REV__nc|ENSG00000182621|Q9NQ66-2|PLCB1	REV__nc|ENSG00000182621|Q9NQ66-2|PLCB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.24652099609375	3	470.256285	1407.74703	-1.4743	-0.0006933	-4.0144	-0.0018878	-5.4887	-0.0025811	470.5896217387881	34.804	0.54662	34.879	34.604	35.151	0.075306					51	19	4	0	0	0	0.43513	1	6876	6876		6.6235	2.2173	1	201360	+		6546	18206	3349	3349	9055	9055					0.05946315057985885
EDLIQQRIEKH	11	Unmodified	_EDLIQQRIEKH_					0	0	0			REV__nc|ENSG00000182621|Q9NQ66-2|PLCB1	REV__nc|ENSG00000182621|Q9NQ66-2|PLCB1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	470.256285	1407.74703	-1.4743	-0.0006933	-4.0144	-0.0018878	-5.4887	-0.0025811	470.5896217387881	34.804	0.54662	34.879	34.604	35.151	0.075306	0.026173	0.00036266	NaN	6.6235	51	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201360	+		6547	18206	3349	3349							0.05946315057985885
EDLKKAYRR	9	Unmodified	_EDLKKAYRR_					0	0	0		ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	ENSG00000148719|ENST00000444643|DNAJB12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3197631835938	2	589.835654	1177.65676	-0.01856	-1.0947E-05	1.095	0.00064585	1.0764	0.0006349	590.3370720678763	13.29	0.16703	13.222	13.162	13.329	-0.067495					14	5	4	0	0	0	0.26251	1	390	390		0.6015	0	1	20942			6548	4825	3350	3350	9056	9056					0.0750331052022375
EDLNEGMDFDT	11	Unmodified	_EDLNEGMDFDT_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;ENST00000475602.1_1_X:123227886-123229311:+|nuORF	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	643.2453002929688	2	643.248083	1284.48161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.31	1	18.31	17.81	18.81	0								0	0	0	0.37382	1	1893	1893		2.9952	1.3426	1				6549	1732	3351	3351	9057	9057					-0.14924941917638535
EDLQRWLEDV	10	Unmodified	_EDLQRWLEDV_					0	0	0		ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.88214111328125	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.616	1	15.616	15.116	16.116	0								0	0	0	0.38197	1	1080	1080		0.69767	0	1				6550	5700	3352	3352	9058	9058					-0.01356727024403881
EDLTLKPEEPM	11	Unmodified	_EDLTLKPEEPM_					0	0	0			REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.88226318359375	3	434.547966	1300.62207	-0.20322	-8.8308E-05	1.559	0.00067747	1.3558	0.00058916	434.8824874081855	22.251	0.89186	22.251	21.731	22.622	0					69	31	4	0	0	0	0.4709	1	3012	3012		1.9275	0.71267	1	276940	+		6551	14560	3353	3353	9059	9059					-0.016217381933984143
EDNVDVHDIE	10	Unmodified	_EDNVDVHDIE_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-3|NF1;nc|ENSG00000196712|P21359-5|NF1;NF1|p.R1534Hfs*40|1|0.38|ENSG00000196712|chr17:31261734-31261734|G/-|frameshift_variant	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.305908203125	2	592.756932	1183.49931	0.64009	0.00037942	1.6601	0.00098404	2.3002	0.0013635	592.7580286679572	85.179	0.46796	85.179	84.994	85.462	0					30	17	2	0	0	0	0.31958	1	22419	22419		5.2969	1.7004	1	170870			6552	7899	3354	3354	9060	9060					-0.08509858600473308
EDPEEGEQLF	10	Unmodified	_EDPEEGEQLF_					0	0	0			REV__STAG2|p.E750Dfs*31|1|0.27|ENSG00000101972|chrX:124066420-124066430|AAAGCAGCTCT/-|frameshift_variant	REV__STAG2|p.E750Dfs*31|1|0.27|ENSG00000101972|chrX:124066420-124066430|AAAGCAGCTCT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.804931640625	2	596.753858	1191.49316	0.8137	0.00048558	-0.53631	-0.00032005	0.27739	0.00016553	596.753570513033	74.749	1.0844	74.749	74.481	75.565	0					58	38	2	0	0	0	0.31515	1	19114	19114		12.241	1.4167	1	2000900	+		6553	14297	3355	3355	9061	9061					-0.09492376831985894
EDPRRPRLR	9	Unmodified	_EDPRRPRLR_					0	0	0		ENSG00000229544|ENST00000451024|NKX1-2	ENSG00000229544|ENST00000451024|NKX1-2	ENSG00000229544|ENST00000451024|NKX1-2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8446044921875	2	597.844345	1193.67414	0.42471	0.00025391	-0.05195	-3.1058E-05	0.37276	0.00022285	597.8442501171078	17.548	0.92576	17.548	17.151	18.077	0					67	31	3	0	0	0	0.34681	1	1707	1707		1.8442	0	1	120050			6554	8463	3356	3356	9062	9062					0.08504650845861761
EDPRRPRLR	9	Unmodified	_EDPRRPRLR_					0	0	0		ENSG00000229544|ENST00000451024|NKX1-2	ENSG00000229544|ENST00000451024|NKX1-2	ENSG00000229544|ENST00000451024|NKX1-2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8444213867188	2	597.844345	1193.67414	0.30303	0.00018116	0.059426	3.5527E-05	0.36245	0.00021669	597.8443240336142	17.833	0.7793	17.716	17.259	18.038	-0.11739					56	26	3	0	0	0	0.34681	1	1797	1797		1.8442	1.8442	1	128780			6555	8463	3356	3356	9063	9063					0.08504650845861761
EDPRRPRLR	9	Unmodified	_EDPRRPRLR_					0	0	0		ENSG00000229544|ENST00000451024|NKX1-2	ENSG00000229544|ENST00000451024|NKX1-2	ENSG00000229544|ENST00000451024|NKX1-2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8445434570312	2	597.844345	1193.67414	0.29146	0.00017425	0.14218	8.5001E-05	0.43364	0.00025925	597.8444444607018	17.757	0.95606	17.696	17.241	18.197	-0.060429					67	33	3	0	0	0	0.34681	1	1763	1763		1.8442	0.36234	1	114850			6556	8463	3356	3356	9064	9064					0.08504650845861761
EDPTSPKRKM	10	Unmodified	_EDPTSPKRKM_					0	0	0		nc|ENSG00000079432|Q96RK0-2|CIC;ENSG00000079432|ENST00000681038|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8065185546875	2	594.805705	1187.59686	0.46716	0.00027787	0.78823	0.00046884	1.2554	0.00074671	594.806041198242	59.026	0.97506	59.118	58.849	59.824	0.091305					79	34	4	0	0	0	0.36786	1	14424	14424		9.3831	1.2276	1	1343900			6557	1134	3357	3357	9065	9065					0.010562517946709704
EDRGFVQVDD	10	Unmodified	_EDRGFVQVDD_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.2677001953125	2	590.267467	1178.52038	0.056302	3.3233E-05	1.2179	0.00071889	1.2742	0.00075212	590.2680516853654	14.632	0.55558	14.566	14.289	14.845	-0.066068					30	19	2	0	0	0	0.41242	1	808	808		1.1933	0.59184	1	40692			6558	2519	3358	3358	9066	9066					-0.06173848500952772
EDRKWLKEI	9	Unmodified	_EDRKWLKEI_					0	0	0			REV__AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;REV__ENST00000470300.5_1_1:247027247-247061635:-|nuORF	REV__AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8377685546875	2	608.837862	1215.66117	0.18709	0.00011391	-0.29072	-0.000177	-0.10364	-6.3098E-05	608.8375189610648	105.7	1.0637	105.7	105.22	106.28	-0.0027847					373	153	3	0	0	0	0.33018	1	28042	28042		4.3292	0.73274	1	963300	+		6559	13091;21348	3359	3359	9067	9067					0.061967749431460106
EDSGIHFVTI	10	Unmodified	_EDSGIHFVTI_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7	REV__ENSG00000092439|ENST00000646667|TRPM7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2821655273438	2	559.279846	1116.54514	0.12067	6.749E-05	1.4022	0.00078424	1.5229	0.00085173	559.2805061996455	67.41	0.63988	67.394	67.06	67.7	-0.016296					32	21	2	0	0	0	0.24708	1	16893	16893		36.127	3.3413	1	314080	+		6560	14081	3360	3360	9068	9068					-0.00847168627569772
EDVDQDETFL	10	Unmodified	_EDVDQDETFL_					0	0	0			REV__nc|ENSG00000185404|Q9H930-2|SP140L	REV__nc|ENSG00000185404|Q9H930-2|SP140L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.2613525390625	2	605.75914	1209.50373	0.51127	0.00030971	0.44941	0.00027224	0.96069	0.00058194	605.7594682669595	74.691	0.91312	74.743	74.488	75.401	0.052361					68	32	3	0	0	0	0.31396	3	19134	19134;19182;19234		27.629	7.2143	1	993600	+		6561	18378	3361	3361	9069;9070;9071	9069					-0.0926439417758047
EDVDQDETFL	10	Unmodified	_EDVDQDETFL_					0	0	0			REV__nc|ENSG00000185404|Q9H930-2|SP140L	REV__nc|ENSG00000185404|Q9H930-2|SP140L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.2613525390625	2	605.75914	1209.50373	0.51127	0.00030971	0.44941	0.00027224	0.96069	0.00058194	605.7594682669595	74.691	0.91312	74.743	74.488	75.401	0.052361					68	32	3	0	0	0	0.31178	1	19134	19134		27.629	7.2143	1	993600	+		6562	18378	3361	3361	9072	9072					-0.0926439417758047
EDVDQDETFL	10	Unmodified	_EDVDQDETFL_					0	0	0			REV__nc|ENSG00000185404|Q9H930-2|SP140L	REV__nc|ENSG00000185404|Q9H930-2|SP140L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.7598266601562	2	605.75914	1209.50373	0.59993	0.00036341	0.1397	8.4624E-05	0.73963	0.00044804	605.759365285316	74.788	0.94304	74.757	74.5	75.443	-0.031487					76	34	4	0	0	0	0.27239	1	19202	19202		27.629	7.2143	1	1291000	+		6563	18378	3361	3361	9073	9073					-0.0926439417758047
EDVEEEEEF	9	Unmodified	_EDVEEEEEF_					0	0	0			REV__ENSG00000165805|ENST00000298699|C12orf50	REV__ENSG00000165805|ENST00000298699|C12orf50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2819213867188	2	577.722224	1153.42989	0.24734	0.00014289	-0.79392	-0.00045867	-0.54658	-0.00031577	577.721546926512	76.764	0.55962	76.818	76.619	77.178	0.053413					44	19	4	0	0	0	0.24913	1	19836	19836		12.532	4.6214	1	218760	+		6564	17269	3362	3362	9074	9074					-0.14068362339889973
EDVLLAMII	9	Unmodified	_EDVLLAMII_					0	0	0		ENSG00000131477|ENST00000253796|RAMP2;nc|ENSG00000131477|O60895-2|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7664489746094	2	508.788461	1015.56237	0.079244	4.0319E-05	-2.5008	-0.0012724	-2.4215	-0.001232	509.287965885968	15.527	0.50531	15.527	15.413	15.918	0					39	17	4	0	0	0	0.25066	1	1024	1024		11.64	9.5805	1	64970			6565	3571	3363	3363	9075	9075					0.05521035653885065
EDVQKMKDK	9	Unmodified	_EDVQKMKDK_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.331787109375	2	560.786981	1119.55941	0.88114	0.00049413	-0.2422	-0.00013582	0.63894	0.00035831	560.7867743400408	56.299	0.62785	56.28	55.991	56.619	-0.019081					42	22	2	0	0	0	0.25323	1	13502	13502		6.2058	0	1	2869800			6566	7973	3364	3364	9076	9076					0.004411605290670195
EDYLPSSTV	9	Unmodified	_EDYLPSSTV_					0	0	0		ENSG00000146966|ENST00000496613|DENND2A;nc|ENSG00000146966|Q9ULE3-2|DENND2A	ENSG00000146966|ENST00000496613|DENND2A	ENSG00000146966|ENST00000496613|DENND2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.7379455566406	2	505.73748	1009.46041	0.21677	0.00010963	0.60344	0.00030518	0.82021	0.00041481	505.737734463538	16.231	0.58284	16.169	15.943	16.526	-0.062534					32	19	2	0	0	0	0.29176	1	1258	1258		10.074	5.3179	1	79161			6567	4741	3365	3365	9077	9077					-0.04394539164172784
EDYLPSSTV	9	Unmodified	_EDYLPSSTV_					0	0	0		ENSG00000146966|ENST00000496613|DENND2A;nc|ENSG00000146966|Q9ULE3-2|DENND2A	ENSG00000146966|ENST00000496613|DENND2A	ENSG00000146966|ENST00000496613|DENND2A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	505.73748	1009.46041	0.17469	8.8346E-05	0.65929	0.00033343	0.83398	0.00042178	505.737712595698	16.255	0.53964	16.255	16.035	16.574	0	0.023468	3.2076E-06	NaN	10.074	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91838			6568	4741	3365	3365							-0.04394539164172784
EDYLPSSTV	9	Unmodified	_EDYLPSSTV_					0	0	0		ENSG00000146966|ENST00000496613|DENND2A;nc|ENSG00000146966|Q9ULE3-2|DENND2A	ENSG00000146966|ENST00000496613|DENND2A	ENSG00000146966|ENST00000496613|DENND2A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	505.73748	1009.46041	0.095228	4.816E-05	0.74188	0.0003752	0.83711	0.00042336	505.7376908490387	16.386	0.62418	16.272	15.987	16.611	-0.11434	0.039617	8.674E-05	NaN	10.074	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75443			6569	4741	3365	3365							-0.04394539164172784
EDYLPSSTV	9	Unmodified	_EDYLPSSTV_					0	0	0		ENSG00000146966|ENST00000496613|DENND2A;nc|ENSG00000146966|Q9ULE3-2|DENND2A	ENSG00000146966|ENST00000496613|DENND2A	ENSG00000146966|ENST00000496613|DENND2A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	505.73748	1009.46041	0.21677	0.00010963	0.60344	0.00030518	0.82021	0.00041481	505.737734463538	16.231	0.58284	16.169	15.943	16.526	-0.062534	-0.063086	-5.329E-05	NaN	10.074	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79161			6570	4741	3365	3365							-0.04394539164172784
EEAELRDYQL	10	Unmodified	_EEAELRDYQL_					0	0	0		DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant;ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-3|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B	DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant	DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.57501220703125	3	422.538458	1264.59355	-0.22236	-9.3954E-05	-1.7046	-0.00072027	-1.927	-0.00081423	422.5376909044359	18.987	0.4874	18.929	18.654	19.142	-0.058174					24	16	2	0	0	0	0.32095	1	2138	2138		3.0723	0.98626	1	33841			6571	262	3366	3366	9078	9078					-0.02816719778343213
EEARQRVANF	10	Unmodified	_EEARQRVANF_					0	0	0			REV__ENST00000478253.5_1_3:58223324-58223504:+|nuORF	REV__ENST00000478253.5_1_3:58223324-58223504:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.3125	2	610.312543	1218.61053	0.23522	0.00014356	-0.53703	-0.00032776	-0.30182	-0.0001842	610.3123878095433	31.085	1.0003	31.085	30.553	31.553	0					92	35	3	0	0	0	0.3258	1	5752	5752		17.113	1.8644	1	550220	+		6572	21447	3367	3367	9079	9079					0.009972456181458256
EEDKVNSLN	9	Unmodified	_EEDKVNSLN_					0	0	0		MYH3|p.N1505Tfs*2|1|0.27|ENSG00000109063|chr17:10634027-10634027|C/-|frameshift_variant;MYH3|p.N1503Kfs*16|1|0.26|ENSG00000109063|chr17:10634029-10634030|TA/-|frameshift_variant;ENSG00000109063|ENST00000583535|MYH3	MYH3|p.N1505Tfs*2|1|0.27|ENSG00000109063|chr17:10634027-10634027|C/-|frameshift_variant	MYH3|p.N1505Tfs*2|1|0.27|ENSG00000109063|chr17:10634027-10634027|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8058471679688	2	524.251286	1046.48802	0.42472	0.00022266	0.78942	0.00041385	1.2141	0.00063651	524.2517418424749	49.244	0.49333	49.289	49.073	49.566	0.044891					23	17	2	0	0	0	0.24848	1	11397	11397		13.906	4.5229	1	188710			6573	2231	3368	3368	9080	9080					-0.03336635903929164
EEEEEEELRK	10	Unmodified	_EEEEEEELRK_					0	0	0			REV__ENSG00000112659|ENST00000252050|CUL9	REV__ENSG00000112659|ENST00000252050|CUL9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2340393066406	3	440.536895	1318.58885	-0.10075	-4.4385E-05	0.85963	0.0003787	0.75888	0.00033431	440.87156778642816	17.396	0.33369	17.278	17.053	17.386	-0.11739					20	11	2	0	0	0	0.3213	1	1650	1650		1.9064	0.1641	1	38265	+		6574	14783	3369	3369	9081	9081					-0.057696487117709694
EEEEEEELRK	10	Unmodified	_EEEEEEELRK_					0	0	0			REV__ENSG00000112659|ENST00000252050|CUL9	REV__ENSG00000112659|ENST00000252050|CUL9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	440.536895	1318.58885	0.21166	9.3245E-05	0.73267	0.00032277	0.94433	0.00041601	440.5372739578512	17.202	0.32692	17.142	16.971	17.298	-0.060429	-0.025931	-6.3135E-05	NaN	1.9064	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37476	+		6575	14783	3369	3369							-0.057696487117709694
EEEEELSFSI	10	Unmodified	_EEEEELSFSI_					0	0	0			REV__ENSG00000143344|ENST00000360851|RGL1	REV__ENSG00000143344|ENST00000360851|RGL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.514892578125	3	404.515319	1210.52413	-0.16014	-6.4779E-05	-1.4033	-0.00056766	-1.5634	-0.00063244	404.51495613452454	16.418	0.63513	16.355	16.094	16.729	-0.062534					87	21	7	0	0	0	0.29978	1	1302	1302		12.873	0	1	548110	+		6576	16165	3370	3370	9082	9082					-0.07271223517750514
EEEGHGLSLN	10	Unmodified	_EEEGHGLSLN_					0	0	0		ENSG00000130528|ENST00000252825|HRC	ENSG00000130528|ENST00000252825|HRC	ENSG00000130528|ENST00000252825|HRC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8078002929688	2	542.74891	1083.48327	0.47294	0.00025669	1.9425	0.0010543	2.4154	0.001311	542.7499117234594	76.655	0.38334	76.655	76.474	76.858	0					22	13	3	0	0	0	0.31358	1	19740	19740		13.906	1.3745	1	110340			6577	3483	3371	3371	9083	9083					-0.055135200467020695
EEENSRFH	8	Unmodified	_EEENSRFH_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-2|NLRC5	REV__nc|ENSG00000140853|Q86WI3-2|NLRC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.774658203125	2	524.228145	1046.44174	0.4549	0.00023847	-0.033636	-1.7633E-05	0.42126	0.00022084	524.2279682564281	16.59	0.34934	16.528	16.324	16.674	-0.062534					15	11	2	0	0	0	0.34414	1	1401	1401		2.0598	0.21551	1	39123	+		6578	16055	3372	3372	9084	9084					-0.0796265601536561
EEERQKKEDE	10	Unmodified	_EEERQKKEDE_					0	0	0		nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.5386657714844	3	440.540639	1318.60009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.206	1	12.109	11.609	12.609	-0.096607								0	0	0	0.38189	1	60	60		1.2148	0.20126	1				6579	2820	3373	3373	9085	9085					-0.04646826617613442
EEFPFPYYII	10	Unmodified	_EEFPFPYYII_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.8847351074219	3	439.884907	1316.63289	-0.10717	-4.7144E-05	-0.72923	-0.00032078	-0.83641	-0.00036792	439.88484086362377	28.391	0.78585	28.387	28.112	28.898	-0.0042572					78	27	5	0	0	0	0.36698	1	4926	4926		9.544	2.5069	1	763170			6580	2416	3374	3374	9086	9086					-0.01275967756805585
EEGGDESDLS	10	Unmodified	_EEGGDESDLS_					0	0	0		ENSG00000181090|ENST00000460843|EHMT1;nc|ENSG00000181090|Q9H9B1-4|EHMT1;ENST00000371394.6_1_9:140611085-140686569:+|nuORF;nc|ENSG00000181090|Q9H9B1-3|EHMT1	ENSG00000181090|ENST00000460843|EHMT1	ENSG00000181090|ENST00000460843|EHMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7714233398438	2	519.198916	1036.38328	0.43462	0.00022565	-0.20193	-0.00010484	0.23269	0.00012081	519.1986020342703	62.267	0.7256	62.267	62.022	62.747	0					57	26	4	0	0	0	0.31847	1	15455	15455		6.7232	2.3939	1	481570			6581	7223	3375	3375	9087	9087					-0.133458021711931
EEGGDESDLS	10	Unmodified	_EEGGDESDLS_					0	0	0		ENSG00000181090|ENST00000460843|EHMT1;nc|ENSG00000181090|Q9H9B1-4|EHMT1;ENST00000371394.6_1_9:140611085-140686569:+|nuORF;nc|ENSG00000181090|Q9H9B1-3|EHMT1	ENSG00000181090|ENST00000460843|EHMT1	ENSG00000181090|ENST00000460843|EHMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7714233398438	2	519.198916	1036.38328	0.27351	0.00014201	-0.19236	-9.9874E-05	0.08115	4.2133E-05	519.1987122485355	62.176	0.70776	62.273	62.03	62.738	0.096989					58	25	4	0	0	0	0.31629	1	15327	15327		6.2058	0	1	495520			6582	7223	3375	3375	9088	9088					-0.133458021711931
EEGGDESDLS	10	Unmodified	_EEGGDESDLS_					0	0	0		ENSG00000181090|ENST00000460843|EHMT1;nc|ENSG00000181090|Q9H9B1-4|EHMT1;ENST00000371394.6_1_9:140611085-140686569:+|nuORF;nc|ENSG00000181090|Q9H9B1-3|EHMT1	ENSG00000181090|ENST00000460843|EHMT1	ENSG00000181090|ENST00000460843|EHMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7716064453125	2	519.198916	1036.38328	0.34835	0.00018086	-0.19404	-0.00010075	0.15431	8.0116E-05	519.1986484671223	62.243	0.64227	62.234	61.979	62.621	-0.0085526					61	23	4	0	0	0	0.31629	1	15395	15395		6.2058	0	1	538490			6583	7223	3375	3375	9089	9089					-0.133458021711931
EEGRFWRI	8	Unmodified	_EEGRFWRI_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8423461914062	2	546.78289	1091.55123	0.39235	0.00021453	-3.9598	-0.0021651	-3.5674	-0.0019506	546.7802873720912	23.293	0.30359	23.206	23.077	23.381	-0.087608					14	10	2	0	0	0	0.34337	1	3402	3402		5.2307	0	1	40947	+		6584	16423	3376	3376	9090	9090					0.009113943946204017
EEGRKQYMV	9	Unmodified	_EEGRKQYMV_					0	0	0			REV__ENST00000393599.2_1_19:10677414-10677732:-|nuORF	REV__ENST00000393599.2_1_19:10677414-10677732:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2791137695312	2	570.279323	1138.54409	0.21289	0.00012141	-0.48635	-0.00027735	-0.27346	-0.00015595	570.2789902861175	19.18	0.4775	19.064	18.863	19.341	-0.11592					31	16	3	0	0	0	0.33508	1	2177	2177		3.5965	0	1	98266	+		6585	20607	3377	3377	9091	9091					-0.01963706268156784
EEIGEWDC	8	Unmodified	_EEIGEWDC_					0	0	0		ENST00000473046.1_1_1:183252983-183259825:-|nuORF	ENST00000473046.1_1_1:183252983-183259825:-|nuORF	ENST00000473046.1_1_1:183252983-183259825:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.28717041015625	2	490.686933	979.359312	-0.29743	-0.00014594	-2.1943	-0.0010767	-2.4917	-0.0012226	490.6854596387297	35.305	0.12758	35.305	35.227	35.354	0					5	4	2	0	0	0	0.344	1	7032	7032		2.5775	1.976	1	54284			6586	10901	3378	3378	9092	9092					-0.13119314138555183
EEIISVVDD	9	Unmodified	_EEIISVVDD_					0	0	0			REV__ENSG00000128564|ENST00000249330|VGF	REV__ENSG00000128564|ENST00000249330|VGF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.767333984375	2	509.750587	1017.48662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.669	1	13.57	13.07	14.07	-0.099291								0	0	0	0.264	1	496	496		1.8442	0.19162	1		+		6587	15375	3379	3379	9093	9093					-0.021422699927029498
EEIVPLKSHF	10	Unmodified	_EEIVPLKSHF_					0	0	0		ENST00000476846.1_7:111503332-111846439:-|nuORF	ENST00000476846.1_7:111503332-111846439:-|nuORF	ENST00000476846.1_7:111503332-111846439:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.3018188476562	2	599.826963	1197.63937	0.28728	0.00017232	-2.915	-0.0017485	-2.6277	-0.0015762	599.8258588145953	22.589	0.14347	22.589	22.505	22.649	0					6	4	2	0	0	0	0.32088	1	3167	3167		2.7352	0.89096	1	18156			6588	10949	3380	3380	9094	9094					0.04845970194560323
EEKGVRMKLTV	11	Unmodified	_EEKGVRMKLTV_					0	0	0		nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	645.3801879882812	2	645.36593	1288.71731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.92	1	70.896	70.396	71.396	-0.024872								0	0	0	0.36517	1	17987	17987		4.897	0.70751	1				6589	7467	3381	3381	9095	9095					0.08449659788288955
EEKRLWQRR	9	Unmodified	_EEKRLWQRR_					0	0	0		ENST00000515594.5_1_6:64345874-64401682:+|nuORF	ENST00000515594.5_1_6:64345874-64401682:+|nuORF	ENST00000515594.5_1_6:64345874-64401682:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.558837890625	3	434.245944	1299.716	-0.22283	-9.6763E-05	-1.2881	-0.00055933	-1.5109	-0.0006561	434.24529663734404	16.142	0.49555	16.028	15.866	16.362	-0.11434					30	16	3	0	0	0	0.26245	1	1340	1340		0.96228	0	1	62409			6590	11429	3382	3382	9096	9096					0.07813206534387973
EEKRLWQRR	9	Unmodified	_EEKRLWQRR_					0	0	0		ENST00000515594.5_1_6:64345874-64401682:+|nuORF	ENST00000515594.5_1_6:64345874-64401682:+|nuORF	ENST00000515594.5_1_6:64345874-64401682:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	434.245944	1299.716	-0.27069	-0.00011755	-2.2588	-0.00098086	-2.5295	-0.0010984	434.24485254054923	16.058	0.42489	16.058	15.842	16.267	0	0.02005	-0.00045654	NaN	0.96228	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54555			6591	11429	3382	3382							0.07813206534387973
EEKRPGAI	8	Unmodified	_EEKRPGAI_					0	0	0			REV__ENSG00000151025|ENST00000376351|GPR158	REV__ENSG00000151025|ENST00000376351|GPR158	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2506408691406	2	450.250892	898.48723	0.26791	0.00012063	0.08015	3.6088E-05	0.34806	0.00015671	450.2510445182547	23.991	0.43069	23.952	23.765	24.196	-0.038927					27	14	2	0	0	0	0.3671	1	3628	3628		23.148	0.41214	1	125420	+		6592	16523	3383	3383	9097	9097					0.03392614237657199
EEKSPQKTTG	10	Unmodified	_EEKSPQKTTG_					0	0	0			REV__ENSG00000108592|ENST00000427159|FTSJ3	REV__ENSG00000108592|ENST00000427159|FTSJ3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.3012084960938	2	552.78021	1103.54587	0.26832	0.00014832	1.2876	0.00071176	1.5559	0.00086009	552.7808116255676	17.595	0.45952	17.535	17.384	17.844	-0.060429					19	15	2	0	0	0	0.32054	1	1639	1639		3.2813	1.2216	1	29442	+		6593	14604	3384	3384	9098	9098					-0.0017637397852467984
EEKSSKTWLS	10	Unmodified	_EEKSSKTWLS_					0	0	0			REV__APOOL|p.T242Sfs*19|1|0.58|ENSG00000155008|chrX:85087593-85087596|CAAC/-|frameshift_variant	REV__APOOL|p.T242Sfs*19|1|0.58|ENSG00000155008|chrX:85087593-85087596|CAAC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.3214721679688	2	597.803685	1193.59282	0.62248	0.00037212	2.8274	0.0016902	3.4499	0.0020623	598.3072127676902	53.283	0.34139	53.339	53.141	53.482	0.056255					19	12	2	0	0	0	0.36786	1	12535	12535		9.3831	0.63772	1	350550	+		6594	13107	3385	3385	9099	9099					0.0037648557263310067
EEKTRNTFLL	10	Unmodified	_EEKTRNTFLL_					0	0	0			REV__ENST00000515049.1_1_17:48016676-48017012:+|nuORF	REV__ENST00000515049.1_1_17:48016676-48017012:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.8418579101562	2	625.840602	1249.66665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.467	1	91.467	90.967	91.967	0								0	0	0	0.38104	1	24290	24290		3.5965	0	1		+		6595	13577	3386	3386	9100	9100					0.05180453734942603
EELEQQFRD	9	Unmodified	_EELEQQFRD_					0	0	0			REV__nc|ENSG00000292277|Q9UJ98-3|STAG3	REV__nc|ENSG00000292277|Q9UJ98-3|STAG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.2764282226562	2	597.275292	1192.53603	0.50045	0.00029891	0.65526	0.00039137	1.1557	0.00069028	597.2758344015111	24.355	0.61741	24.283	23.966	24.584	-0.072559					45	20	3	0	0	0	0.34923	1	3725	3725		1.4819	0.28856	1	127620	+		6596	13684	3387	3387	9101	9101					-0.05253561983886357
EELESYMDPM	10	Unmodified	_EELESYMDPM_					0	0	0		nc|ENSG00000078808|Q9BRK5-5|SDF4;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;nc|ENSG00000078808|Q9BRK5-2|SDF4;ENST00000478938.1_1_1:1152894-1154464:-|nuORF;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4	nc|ENSG00000078808|Q9BRK5-5|SDF4	nc|ENSG00000078808|Q9BRK5-5|SDF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5242919921875	3	415.166757	1242.47844	0.20001	8.3039E-05	0.30452	0.00012643	0.50454	0.00020947	415.16694212812513	46.177	0.64659	46.237	46.015	46.662	0.059834					33	23	2	0	0	0	0.32123	1	10474	10474		0.13989	0	1	295180			6597	1119	3388	3388	9102	9102					-0.1330990829599159
EELGDWPQF	9	Unmodified	_EELGDWPQF_					0	0	0			REV__nc|ENSG00000179750|Q9UH17-3|APOBEC3B	REV__nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3059692382812	2	560.750921	1119.48729	0.5367	0.00030096	-2.0039	-0.0011237	-1.4672	-0.00082275	560.7497018189422	54.01	0.51773	54.01	53.723	54.24	0					39	18	3	0	0	0	0.24913	1	12727	12727		12.532	0.89125	1	277020	+		6598	18091	3389	3389	9103	9103					-0.06767430553009035
EELKKEYR	8	Unmodified	_EELKKEYR_					0	0	0			REV__nc|ENSG00000157036|Q9Y2C4-3|EXOG	REV__nc|ENSG00000157036|Q9Y2C4-3|EXOG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3355102539062	2	547.795663	1093.57677	0.30094	0.00016485	0.4187	0.00022936	0.71964	0.00039421	547.796026001724	22.454	0.60726	22.409	22.182	22.789	-0.044867					40	20	3	0	0	0	0.34294	1	3152	3152		7.2892	0	1	145940	+		6599	16768	3390	3390	9104	9104					0.03372824126358864
EELLFFQN	8	Unmodified	_EELLFFQN_					0	0	0			REV__CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	REV__CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3005981445312	2	520.258382	1038.50221	0.18804	9.7829E-05	-0.95024	-0.00049437	-0.7622	-0.00039654	520.258305176356	62.126	2.0571	62.223	61.455	63.512	0.096985					118	74	2	0	0	0	0.30503	1	15452	15452		30.225	13.283	1	1025500	+		6600	13146	3391	3391	9105	9105					-0.015499386849796792
EELLLRLYY	9	Unmodified	_EELLLRLYY_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.79833984375	2	606.337164	1210.65977	0.18401	0.00011157	3.5339	0.0021428	3.7179	0.0022543	606.8411306518915	57.593	0.37827	57.576	57.337	57.716	-0.0172					32	13	3	0	0	0	0.25526	1	13851	13851		7.9102	0	1	524800	+		6601	15914	3392	3392	9106	9106					0.06287140854396966
EELLNSLLTSD	11	Unmodified	_EELLNSLLTSD_					0	0	0			REV__nc|ENSG00000065000|O14617-3|AP3D1	REV__nc|ENSG00000065000|O14617-3|AP3D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.840087890625	2	617.314083	1232.61361	0.49447	0.00030524	-3.6855	-0.0022751	-3.191	-0.0019699	617.3120841618496	47.34	0.2747	47.34	47.274	47.549	0					11	9	2	0	0	0	0.32667	1	10794	10794		13.042	4.8869	1	217380	+		6602	13653	3393	3393	9107	9107					0.006610311616213949
EELRFRHRL	9	Unmodified	_EELRFRHRL_					0	0	0			REV__ENSG00000118407|ENST00000237172|FILIP1	REV__ENSG00000118407|ENST00000237172|FILIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.5242614746094	3	419.238789	1254.69454	-0.038793	-1.6263E-05	1.8256	0.00076537	1.7868	0.00074911	419.239437778077	39.043	0.82796	39.136	38.862	39.69	0.09267					52	29	3	0	0	0	0.25527	1	8164	8164		2.7352	0	1	362120	+		6603	15009	3394	3394	9108	9108					0.07737821505702414
EELRIWQF	8	Unmodified	_EELRIWQF_					0	0	0			REV__ENST00000584641.5_1_17:65197178-65214920:-|nuORF	REV__ENST00000584641.5_1_17:65197178-65214920:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3059692382812	2	560.792924	1119.57129	0.53706	0.00030118	-0.27989	-0.00015696	0.25717	0.00014422	560.7923885450404	53.992	0.41177	53.992	53.776	54.188	0					20	14	2	0	0	0	0.31934	1	12727	12727		24.674	1.5255	1	260510	+		6604	22504	3395	3395	9109	9109					0.016291453345502305
EENSADTTK	9	Unmodified	_EENSADTTK_					0	0	0			REV__ENST00000460720.5_1_2:9546965-9548358:-|nuORF	REV__ENST00000460720.5_1_2:9546965-9548358:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7203063964844	2	497.719818	993.425084	0.51399	0.00025582	0.74225	0.00036943	1.2562	0.00062526	497.7202170381047	19.876	0.55324	19.82	19.595	20.149	-0.055693					33	19	2	0	0	0	0.31763	1	2374	2374		6.2058	1.4498	1	57072	+		6605	15032	3396	3396	9110	9110					-0.0718920169199464
EEPQVEQITE	10	Unmodified	_EEPQVEQITE_					0	0	0			REV__nc|ENSG00000165219|Q14C86-6|GAPVD1	REV__nc|ENSG00000165219|Q14C86-6|GAPVD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.2999877929688	2	601.282783	1200.55101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.979	1	90.07	89.57	90.57	0.090668								0	0	0	0.37807	1	23826	23826		2.9952	0	1		+		6606	23070	3397	3397	9111	9111					-0.041241149065626814
EEPQVEQITE	10	Unmodified	_EEPQVEQITE_					0	0	0			REV__nc|ENSG00000165219|Q14C86-6|GAPVD1	REV__nc|ENSG00000165219|Q14C86-6|GAPVD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.2855834960938	2	601.282783	1200.55101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.3	1	106.3	105.8	106.8	-0.0060425								0	0	0	0.37355	1	28112	28112		4.897	0.36815	1		+		6607	23070	3397	3397	9112	9112					-0.041241149065626814
EEQSNRFWR	9	Unmodified	_EEQSNRFWR_					0	0	0			REV__ENSG00000198502|ENST00000374975|HLA-DRB5	REV__ENSG00000198502|ENST00000374975|HLA-DRB5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.5457763671875	3	417.867021	1250.57923	-0.20115	-8.4052E-05	0.96568	0.00040353	0.76454	0.00031947	417.8677011566293	18.681	0.61395	18.622	18.372	18.986	-0.058172					34	21	3	0	0	0	0.2615	1	2103	2103		2.4985	0.75621	1	44186	+		6608	18827	3398	3398	9113	9113					-0.03603327415953572
EERARKLQETN	11	Unmodified	_EERARKLQETN_					0	0	0		nc|ENSG00000005379|O95153-2|TSPOAP1;ENSG00000005379|ENST00000343736|TSPOAP1;nc|ENSG00000005379|O95153-3|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7642822265625	3	458.575907	1372.70589	-0.24644	-0.00011301	0.27832	0.00012763	0.031889	1.4623E-05	458.5760108284857	13.769	0.3054	13.769	13.597	13.902	0					21	10	3	0	0	0	0.33334	1	518	518		1.2148	0	1	34437			6609	333	3399	3399	9114	9114					0.03444554018506096
EEREKSSMRSI	11	Unmodified	_EEREKSSMRSI_					0	0	0			REV__nc|ENSG00000137601|Q96PY6-5|NEK1	REV__nc|ENSG00000137601|Q96PY6-5|NEK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2621765136719	3	451.225997	1350.65616	-0.080381	-3.627E-05	0.93885	0.00042363	0.85847	0.00038736	451.22617420592496	29.929	0.71697	29.943	29.745	30.462	0.013474					55	24	3	0	0	0	0.33236	1	5386	5386		2.4348	1.1051	1	185200	+		6610	15873	3400	3400	9115	9115					-0.005138969817608086
EEREKSSMRSI	11	Unmodified	_EEREKSSMRSI_					0	0	0			REV__nc|ENSG00000137601|Q96PY6-5|NEK1	REV__nc|ENSG00000137601|Q96PY6-5|NEK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	451.225997	1350.65616	0.32349	0.00014597	-1.0199	-0.0004602	-0.6964	-0.00031423	451.2260503069916	29.934	0.16919	29.934	29.801	29.97	0	-0.0043758	-0.0024642	NaN	2.4348	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27367	+		6611	15873	3400	3400							-0.005138969817608086
EERERERRHF	10	Unmodified	_EERERERRHF_					0	0	0			REV__ENST00000367203.8_1_1:204088192-204088234:+|nuORF	REV__ENST00000367203.8_1_1:204088192-204088234:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2825012207031	3	481.911512	1442.71271	0.024614	1.1862E-05	3.7764	0.0018199	3.801	0.0018318	481.91374451281644	23.443	0.85622	23.443	23.173	24.029	0					61	29	3	0	0	0	0.32167	1	3551	3551		0.62683	0.12087	1	113660	+		6612	20307	3401	3401	9116	9116					0.009059116897333297
EERFRVDRKKL	11	Unmodified	_EERFRVDRKKL_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8135070800781	3	492.619558	1474.83684	-0.067934	-3.3465E-05	-2.9167	-0.0014368	-2.9846	-0.0014703	492.6183580960893	13.077	0.08534	13.01	12.936	13.022	-0.067496					4	2	2	0	0	0	0.33349	1	295	295		0.32927	0.23443	1	11776			6613	3074	3402	3402	9117	9117					0.11841989457207092
EERGFLTIF	9	Unmodified	_EERGFLTIF_					0	0	0		nc|ENSG00000011426|Q9NQW6-2|ANLN;ENSG00000011426|ENST00000265748|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3131103515625	2	556.292756	1110.57096	0.54979	0.00030585	-0.37283	-0.0002074	0.17696	9.8442E-05	556.2924827082538	55.486	0.66109	55.557	55.297	55.958	0.070885					63	24	3	0	0	0	0.21303	1	13352	13352		21.747	1.293	1	1240200			6614	442	3403	3403	9118	9118					0.020097256146982545
EERHQEKKRKF	11	Unmodified	_EERHQEKKRKF_					0	0	0		nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|539|37.17|0.3|6.96|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1;ENST00000469334.5_1_17:38785039-38787969:-|nuORF	nc|ENSG00000073584|Q969G3-6|SMARCE1	nc|ENSG00000073584|Q969G3-6|SMARCE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.250732421875	3	505.611063	1513.81136	0.19846	0.00010034	-0.61958	-0.00031327	-0.42112	-0.00021292	505.94489996677237	27.277	0.65529	27.266	26.928	27.584	-0.011562					32	22	2	0	0	0	0.33326	1	4668	4668		1.4551	0.24029	1	121740			6615	141	3404	3404	9119	9119					0.0750051493475894
EERKWRKRLHL	11	Unmodified	_EERKWRKRLHL_					0	0	0			REV__ENST00000575471.2_1_16:31925765-31927799:+|nuORF	REV__ENST00000575471.2_1_16:31925765-31927799:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2379150390625	3	517.639064	1549.89536	0.25044	0.00012964	-3.4873	-0.0018052	-3.2369	-0.0016755	517.637999596756	22.211	0.10859	22.111	22.017	22.125	-0.10034					5	3	2	0	0	0	0.33348	1	3066	3066		0.40827	0.31342	1	34104	+		6616	18422	3405	3405	9120	9120					0.14241090822338265
EERMDPRQAI	10	Unmodified	_EERMDPRQAI_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-2|USP34;REV__ENST00000463046.5_1_2:61435991-61439052:-|nuORF	REV__nc|ENSG00000115464|Q70CQ2-2|USP34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.5820617675781	3	415.539916	1243.59792	-0.2506	-0.00010413	1.764	0.00073301	1.5134	0.00062888	415.54064558945214	23.21	0.43223	23.21	22.904	23.336	0					23	14	2	0	0	0	0.31651	1	3387	3387		7.9454	5.4469	1	55131	+		6617	14879;21242	3406	3406	9121	9121					-0.014135338363985284
EESRWENFL	9	Unmodified	_EESRWENFL_					0	0	0			REV__ENSG00000171714|ENST00000324559|ANO5	REV__ENSG00000171714|ENST00000324559|ANO5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.55450439453125	3	403.85601	1208.5462	-0.41715	-0.00016847	-1.307	-0.00052785	-1.7242	-0.00069632	403.85545216838165	13.85	0.19519	13.85	13.767	13.962	0					11	6	2	0	0	0	0.2615	1	547	547		2.4985	0.21571	1	31090	+		6618	17660	3407	3407	9122	9122					-0.04972954258664686
EETEDEQLNTI	11	Unmodified	_EETEDEQLNTI_					0	0	0			REV__ENSG00000185798|ENST00000332629|WDR53	REV__ENSG00000185798|ENST00000332629|WDR53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.26995849609375	3	440.8649	1319.57287	0.17018	7.5028E-05	-1.4584	-0.00064295	-1.2882	-0.00056792	440.8642592880858	43.897	0.36768	43.981	43.736	44.103	0.083996					21	13	2	0	0	0	0.33236	1	9694	9694		1.1098	0	1	326710	+		6619	18409	3408	3408	9123	9123					-0.07413354948630513
EETKDFFFA	9	Unmodified	_EETKDFFFA_					0	0	0			REV__ENSG00000134744|ENST00000257177|TUT4	REV__ENSG00000134744|ENST00000257177|TUT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.278564453125	2	567.261122	1132.50769	0.15744	8.9312E-05	-0.5991	-0.00033985	-0.44166	-0.00025054	567.2608973668681	117.77	0.069809	117.74	117.7	117.77	-0.024147					10	8	2	0	0	0	0.26117	1	30461	30461		2.3027	0	1	21718	+		6620	15695	3409	3409	9124	9124					-0.05326259893195129
EETRLLLF	8	Unmodified	_EETRLLLF_					0	0	0			REV__ENST00000508189.1_1_4:162300107-162300218:+|nuORF	REV__ENST00000508189.1_1_4:162300107-162300218:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.7816162109375	2	510.78985	1019.56515	0.26663	0.00013619	-0.2463	-0.00012581	0.020335	1.0387E-05	510.78981505482454	81.775	0.63351	81.751	81.395	82.028	-0.02404					67	27	4	0	0	0	0.35375	1	21293	21293		24.674	2.9272	1	664850	+		6621	21771	3410	3410	9125	9125					0.05614627103057046
EETRPSLDFPQ	11	Unmodified	_EETRPSLDFPQ_					0	0	0		ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.56201171875	3	440.213975	1317.62009	-0.27443	-0.00012081	-2.7199	-0.0011973	-2.9943	-0.0013181	440.2130329892647	13.167	0.16884	13.1	12.993	13.162	-0.067495					11	5	3	0	0	0	0.3333	1	321	321		0.45452	0	1	35107			6622	8446	3411	3411	9126	9126					-0.02601030887012712
EETVPVTPLY	10	Unmodified	_EETVPVTPLY_					0	0	0			REV__ENST00000567452.1_1_17:55123419-55123803:+|nuORF	REV__ENST00000567452.1_1_17:55123419-55123803:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.7608032226562	2	574.297704	1146.58086	0.33824	0.00019425	0.80412	0.0004618	1.1424	0.00065605	574.2980942793148	45.077	0.46008	45.077	44.881	45.341	0					29	16	3	0	0	0	0.31165	1	10049	10049		10.824	0	1	259220	+		6623	22380	3412	3412	9127	9127					0.013428688294425228
EETVPVTPLY	10	Unmodified	_EETVPVTPLY_					0	0	0			REV__ENST00000567452.1_1_17:55123419-55123803:+|nuORF	REV__ENST00000567452.1_1_17:55123419-55123803:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.7605590820312	2	574.297704	1146.58086	0.45613	0.00026195	0.67898	0.00038993	1.1351	0.00065189	574.2981017270854	44.771	0.32466	44.839	44.682	45.006	0.068573					21	11	2	0	0	0	0.31165	1	9971	9971		15.847	1.0089	1	297150	+		6624	22380	3412	3412	9128	9128					0.013428688294425228
EEVPKAVIT	9	Unmodified	_EEVPKAVIT_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2691955566406	2	493.281857	984.549162	0.18662	9.2057E-05	-1.4498	-0.00071515	-1.2632	-0.00062309	493.2810146438292	39.929	0.512	39.929	39.62	40.132	0					25	18	2	0	0	0	0.25989	1	8513	8513		14.838	0.25658	1	185030	+		6625	15761	3413	3413	9129	9129					0.05626920866131968
EEVPKAVIT	9	Unmodified	_EEVPKAVIT_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.281857	984.549162	0.18662	9.2057E-05	-1.4498	-0.00071515	-1.2632	-0.00062309	493.2810146438292	39.929	0.512	39.929	39.62	40.132	0	0.044919	1.7041E-05	NaN	14.838	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185030	+		6626	15761	3413	3413							0.05626920866131968
EEVPKAVIT	9	Unmodified	_EEVPKAVIT_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	493.281857	984.549162	0.45963	0.00022673	-1.4931	-0.00073653	-1.0335	-0.00050981	493.28079761413505	39.746	0.33106	39.839	39.662	39.994	0.09267	-0.044919	-2.5731E-05	NaN	14.838	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179510	+		6627	15761	3413	3413							0.05626920866131968
EEVTHLLMT	9	Unmodified	_EEVTHLLMT_					0	0	0			REV__nc|ENSG00000150471|Q9HAR2-3|ADGRL3	REV__nc|ENSG00000150471|Q9HAR2-3|ADGRL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7714233398438	2	536.7708	1071.52705	0.43306	0.00023246	-3.6728	-0.0019714	-3.2397	-0.001739	537.2684278262134	101.37	0.62285	101.37	101.03	101.66	-0.0054703					142	83	2	0	0	0	0.29176	1	27034	27034		10.074	3.3508	1	206290	+		6628	16499	3414	3414	9130	9130					-0.005856268739080406
EEWGLLDLK	9	Unmodified	_EEWGLLDLK_					0	0	0		nc|ENSG00000171606|Q96GC6-2|ZNF274;ENSG00000171606|ENST00000617501|ZNF274;ENST00000594248.1_1_19:58697084-58697255:+|nuORF	nc|ENSG00000171606|Q96GC6-2|ZNF274	nc|ENSG00000171606|Q96GC6-2|ZNF274	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.7929077148438	2	551.792589	1101.57063	0.85024	0.00046916	-0.76383	-0.00042148	0.086413	4.7682E-05	551.7924321015181	77.739	1.0488	77.707	77.072	78.121	-0.031334					99	37	4	0	0	0	0.20626	1	20063	20063		22.736	22.736	1	1385700			6629	6562	3415	3415	9131	9131					0.02390305894869016
EEWKELIY	8	Unmodified	_EEWKELIY_					0	0	0		ENST00000397072.7_1_5:179665329-179706839:-|nuORF;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;ENSG00000050748|ENST00000452135|MAPK9;ENST00000469110.1_1_10:49635089-49642935:+|nuORF;nc|ENSG00000107643|P45983-5|MAPK8;nc|ENSG00000109339|P53779-2|MAPK10;nc|ENSG00000109339|P53779-3|MAPK10;ENSG00000109339|ENST00000641462|MAPK10;nc|ENSG00000107643|P45983-3|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;ENST00000508262.2_2_4:86938383-87019884:-|nuORF	ENST00000397072.7_1_5:179665329-179706839:-|nuORF;nc|ENSG00000107643|P45983-3|MAPK8;ENST00000508262.2_2_4:86938383-87019884:-|nuORF	ENST00000397072.7_1_5:179665329-179706839:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2770385742188	2	555.279315	1108.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.67	1	115.67	115.17	116.17	0								0	0	0	0.37992	1	29969	29969		0.79363	0	1				6630	665;2137;11348	3416	3416	9132	9132					-0.005853829964735269
EEWVLSGKQSD	11	Unmodified	_EEWVLSGKQSD_					0	0	0		nc|ENSG00000089094|Q8NHM5-5|KDM2B;ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;ENST00000541318.1_1_12:121954314-121973995:-|nuORF	nc|ENSG00000089094|Q8NHM5-5|KDM2B	nc|ENSG00000089094|Q8NHM5-5|KDM2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	639.3013305664062	2	639.304049	1276.59355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.59	1	102.59	102.09	103.09	0								0	0	0	0.38146	1	27289	27289		0.96228	0.36078	1				6631	1348	3417	3417	9133	9133					-0.03368719778313789
EFAEFYETF	9	Unmodified	_EFAEFYETF_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.7534790039062	2	591.75313	1181.49171	0.47881	0.00028334	-0.11273	-6.6709E-05	0.36608	0.00021663	591.752954126338	79.558	0.6937	79.558	79.315	80.009	0					75	26	4	0	0	0	4.3382E-05	2	20618	20618;20671		149.99	124.6	1	561110			6632	2497	3418	3418	9134;9135	9134					-0.09177966130118875
EFAEFYETF	9	Unmodified	_EFAEFYETF_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.7532958984375	2	591.75313	1181.49171	0.47595	0.00028165	-0.29602	-0.00017517	0.17993	0.00010647	591.752946070829	79.469	0.79181	79.53	79.314	80.106	0.061417					68	30	3	0	0	0	4.3382E-05	2	20593	20593;20642		149.99	124.6	1	627420			6633	2497	3418	3418	9136;9137	9136					-0.09177966130118875
EFAEFYETF	9	Unmodified	_EFAEFYETF_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.7532958984375	2	591.75313	1181.49171	0.48727	0.00028834	-0.15993	-9.4639E-05	0.32734	0.0001937	591.75288026477	79.633	0.76337	79.604	79.348	80.112	-0.028931					72	28	4	0	0	0	1.8535E-07	2	20672	20618;20672		172.91	147.51	1	694420			6634	2497	3418	3418	9138;9139	9139					-0.09177966130118875
EFALLKTQYF	10	Unmodified	_EFALLKTQYF_					0	0	0			REV__ENST00000421085.6_1_X:10205372-10205696:+|nuORF	REV__ENST00000421085.6_1_X:10205372-10205696:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.8489990234375	2	630.337164	1258.65977	0.21526	0.00013569	-1.3721	-0.00086487	-1.1568	-0.00072918	630.3365422366747	49.028	0.38039	49.073	48.961	49.342	0.044891					25	13	3	0	0	0	0.31691	1	11284	11284		9.3831	0	1	415700	+		6635	20862	3419	3419	9140	9140					0.04079140854355501
EFALLKTQYF	10	Unmodified	_EFALLKTQYF_					0	0	0			REV__ENST00000421085.6_1_X:10205372-10205696:+|nuORF	REV__ENST00000421085.6_1_X:10205372-10205696:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.8490600585938	2	630.337164	1258.65977	0.17129	0.00010797	-1.1853	-0.00074711	-1.014	-0.00063914	630.3365821243681	49.015	0.3396	49.047	48.929	49.268	0.032047					25	11	3	0	0	0	0.31515	1	11260	11260		12.241	0	1	368330	+		6636	20862	3419	3419	9141	9141					0.04079140854355501
EFCSDYESF	9	Unmodified	_EFCSDYESF_					0	0	0		ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.332275390625	2	563.705322	1125.39609	0.52377	0.00029525	1.4065	0.00079285	1.9303	0.0010881	563.7061594547704	66.008	0.41652	66.008	65.795	66.211	0					24	14	2	0	0	0	0.25526	1	16548	16548		7.9102	5.8504	1	183370			6637	4523	3420	3420	9142	9142					-0.16159062312635797
EFCSDYESF	9	Unmodified	_EFCSDYESF_					0	0	0		ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.33251953125	2	563.705322	1125.39609	0.63055	0.00035545	1.3557	0.00076423	1.9863	0.0011197	563.7062942675735	65.815	0.43552	65.903	65.677	66.113	0.088882					25	15	2	0	0	0	0.25879	1	16468	16468		4.756	0	1	211080			6638	4523	3420	3420	9143	9143					-0.16159062312635797
EFCSDYESF	9	Unmodified	_EFCSDYESF_					0	0	0		ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.3322143554688	2	563.705322	1125.39609	0.375	0.00021139	1.5361	0.00086588	1.9111	0.0010773	563.7061806006724	65.969	0.44546	65.955	65.748	66.193	-0.013588					25	15	2	0	0	0	0.25526	1	16501	16501		4.3292	2.2695	1	221790			6639	4523	3420	3420	9144	9144					-0.16159062312635797
EFDDDQDWH	9	Unmodified	_EFDDDQDWH_					0	0	0			REV__nc|ENSG00000004487|O60341|KDM1A	REV__nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.7195434570312	2	603.72035	1205.42615	0.67373	0.00040674	-1.6443	-0.00099269	-0.97057	-0.00058595	603.7190355747222	83.383	0.4547	83.458	83.241	83.696	0.074852					24	16	2	0	0	0	0.34809	1	21798	21798		1.6526	0.17072	1	124200	+		6640	13331	3421	3421	9145	9145					-0.16834987323113637
EFDYMCQYD	9	Unmodified	_EFDYMCQYD_					0	0	0		ENST00000534803.1_1_11:35474916-35547133:-|nuORF;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1	ENST00000534803.1_1_11:35474916-35547133:-|nuORF	ENST00000534803.1_1_11:35474916-35547133:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8723754882812	2	607.212457	1212.41036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.34	1	115.34	114.84	115.84	0								0	0	0	0.26734	1	29895	29895		0.45834	0.057624	1				6641	4843	3422	3422	9146	9146					-0.18734733155997674
EFELETDTLF	10	Unmodified	_EFELETDTLF_					0	0	0		nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.50372314453125	3	415.19581	1242.5656	0.19891	8.2585E-05	-3.1609	-0.0013124	-2.962	-0.0012298	415.1944505018913	44.001	0.50624	44.085	43.891	44.398	0.083996					23	18	2	0	0	0	0.31911	1	9658	9658		1.9064	1.2795	1	356550			6642	688	3423	3423	9147	9147					-0.04598042758425436
EFELETDTLF	10	Unmodified	_EFELETDTLF_					0	0	0		nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	415.19581	1242.5656	0.48579	0.0002017	-3.0306	-0.0012583	-2.5448	-0.0010566	415.1957092619965	44.462	0.13516	44.531	44.463	44.599	0.068569	0.2132	4.7506E-05	NaN	1.9064	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92486			6643	688	3423	3423							-0.04598042758425436
EFEPANDSI	9	Unmodified	_EFEPANDSI_					0	0	0			REV__nc|ENSG00000290894|Q96TA0|PCDHB18P	REV__nc|ENSG00000290894|Q96TA0|PCDHB18P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.22662353515625	2	511.227279	1020.44001	-0.056833	-2.9055E-05	-0.66588	-0.00034042	-0.72272	-0.00036947	511.2270307918506	18.358	1.6114	18.3	17.902	19.514	-0.058174					168	56	5	0	0	0	0.2719	1	1825	1825		13.042	13.042	1	3944000	+		6644	23255	3424	3424	9148	9148					-0.06939709823996054
EFEPRAFF	8	Unmodified	_EFEPRAFF_					0	0	0		ENST00000371417.3_1_9:140510343-140510466:-|nuORF	ENST00000371417.3_1_9:140510343-140510466:-|nuORF	ENST00000371417.3_1_9:140510343-140510466:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2901000976562	2	521.753267	1041.49198	0.57131	0.00029808	-0.64544	-0.00033676	-0.074136	-3.868E-05	521.7535719254029	30.03	0.14627	30.03	29.917	30.064	0					6	4	2	0	0	0	0.34092	1	5433	5433		13.508	3.3245	1	29347			6645	9816	3425	3425	9149	9149					-0.027105016195719145
EFERRNWVKIH	11	Unmodified	_EFERRNWVKIH_					0	0	0		ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7446594238281	3	505.27227	1512.79498	0.48957	0.00024737	-0.95517	-0.00048262	-0.46559	-0.00023525	505.27176073347107	40.467	0.45549	40.559	40.343	40.798	0.092674					39	16	3	0	0	0	0.33346	1	8586	8586		0.50596	0	1	617670			6646	8203	3426	3426	9150	9150					0.059094337686929066
EFERRNWVKIH	11	Unmodified	_EFERRNWVKIH_					0	0	0		ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	505.27227	1512.79498	0.46366	0.00023427	-1.1026	-0.00055712	-0.63895	-0.00032284	505.27154648554324	40.398	0.46278	40.498	40.288	40.75	0.099407	-0.030952	-9.2638E-05	NaN	0.50596	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	704940			6647	8203	3426	3426							0.059094337686929066
EFESQNKEF	9	Unmodified	_EFESQNKEF_					0	0	0		ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.2590942382812	2	579.259111	1156.50367	0.29342	0.00016996	-1.4442	-0.00083659	-1.1508	-0.00066662	579.2580857360331	60.995	1.0649	61.092	60.752	61.817	0.096985					65	38	2	0	0	0	0.19747	1	14912	14912		24.021	1.2843	1	1541500			6648	7651	3427	3427	9151	9151					-0.06832349386900205
EFESQNKEF	9	Unmodified	_EFESQNKEF_					0	0	0		ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	579.259111	1156.50367	0.29342	0.00016996	-1.4442	-0.00083659	-1.1508	-0.00066662	579.2580857360331	60.995	1.0649	61.092	60.752	61.817	0.096985	0.054478	4.5121E-05	NaN	24.021	65	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1541500			6649	7651	3427	3427							-0.06832349386900205
EFFKEEQF	8	Unmodified	_EFFKEEQF_					0	0	0		ENST00000441832.1_1_2:200800752-200808538:-|nuORF;ENST00000452512.6_1_2:200797792-200820219:-|nuORF;ENSG00000162971|ENST00000354611|TYW5	ENST00000441832.1_1_2:200800752-200808538:-|nuORF	ENST00000441832.1_1_2:200800752-200808538:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2556762695312	2	552.25584	1102.49713	0.58056	0.00032062	-0.52854	-0.00029189	0.052015	2.8726E-05	552.2554449887748	64.05	0.59489	64.04	63.794	64.389	-0.0095291					37	21	2	0	0	0	0.31518	1	15899	15899		29.082	5.061	1	445210			6650	5635	3428	3428	9152	9152					-0.050022425476072385
EFFKPILF	8	Unmodified	_EFFKPILF_					0	0	0			REV__ENST00000495058.5_1_20:56822334-56847858:-|nuORF	REV__ENST00000495058.5_1_20:56822334-56847858:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7943725585938	2	520.794404	1039.57425	0.30229	0.00015743	0.53146	0.00027678	0.83375	0.00043421	520.7945084714339	75.975	0.81295	76.029	75.376	76.189	0.053421					44	29	2	0	0	0	0.4397	1	19462	19462		9.3474	9.3474	1	775600	+		6651	19498	3429	3429	9153	9153					0.0560502045937028
EFFLTMLF	8	Unmodified	_EFFLTMLF_					0	0	0			REV__ENSG00000115267|ENST00000649979|IFIH1	REV__ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2666015625	2	524.264622	1046.51469	0.57954	0.00030383	-0.29838	-0.00015643	0.28116	0.0001474	524.2645629837011	52.513	5.0046	52.564	50.933	55.938	0.050575					363	186	4	0	0	0	0.38703	1	12140	12140		20.871	3.7583	1	9697500	+		6652	14870	3430	3430	9154	9154					-0.006706185463372094
EFFRRESL	8	Unmodified	_EFFRRESL_					0	0	0			REV__ENSG00000182606|ENST00000327628|TRAK1	REV__ENSG00000182606|ENST00000327628|TRAK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.81201171875	2	542.282723	1082.55089	0.087429	4.7411E-05	0.79583	0.00043156	0.88326	0.00047898	542.7852037538283	38.813	0.38916	38.813	38.623	39.012	0					20	13	2	0	0	0	0.32886	1	8088	8088		21.747	11.563	1	165250	+		6653	18204	3431	3431	9155	9155					0.012919746747684258
EFGNRSMYF	9	Unmodified	_EFGNRSMYF_					0	0	0			REV__ENST00000360162.7_1_10:111893488-111893578:+|nuORF	REV__ENST00000360162.7_1_10:111893488-111893578:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.30859375	2	575.752941	1149.49133	0.22005	0.00012669	-1.5072	-0.00086778	-1.2872	-0.00074108	575.7518624079356	62.185	0.61144	62.176	61.878	62.49	-0.0085526					36	22	2	0	0	0	0.24311	1	15305	15305		16.942	0	1	279220	+		6654	20251	3432	3432	9156	9156					-0.07743664330928368
EFGNRSMYF	9	Unmodified	_EFGNRSMYF_					0	0	0			REV__ENST00000360162.7_1_10:111893488-111893578:+|nuORF	REV__ENST00000360162.7_1_10:111893488-111893578:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	575.752941	1149.49133	0.24433	0.00014068	-1.5554	-0.00089555	-1.3111	-0.00075487	575.7519015835256	62.253	0.63939	62.253	61.971	62.611	0	0.050841	-3.564E-06	NaN	16.942	36	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294520	+		6655	20251	3432	3432							-0.07743664330928368
EFILCHLPD	9	Unmodified	_EFILCHLPD_					0	0	0		CDKN2AIPNL|p.R46C|1|0.33|ENSG00000237190|chr5:134411719-134411719|G/A|missense_variant	CDKN2AIPNL|p.R46C|1|0.33|ENSG00000237190|chr5:134411719-134411719|G/A|missense_variant	CDKN2AIPNL|p.R46C|1|0.33|ENSG00000237190|chr5:134411719-134411719|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.28662109375	2	543.76806	1085.52157	0.45442	0.0002471	-0.038701	-2.1044E-05	0.41572	0.00022605	543.7678566138072	46.625	0.55856	46.68	46.269	46.827	0.054375					29	19	2	0	0	0	0.22596	1	10532	10532		15.847	0	1	363300			6656	105	3433	3433	9157	9157					-0.017773056657460984
EFINKFQN	8	Unmodified	_EFINKFQN_					0	0	0		L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|21|2|sense	L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|21|2|sense	L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|21|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2762451171875	2	520.263999	1038.51345	0.22202	0.00011551	0.70164	0.00036504	0.92367	0.00048055	520.2641874167932	76.4	1.2757	76.453	75.782	77.058	0.053413					68	45	2	0	0	0	0.39068	1	19826	19826		20.454	2.3186	1	214010			6657	12462	3434	3434	9158	9158					-0.004271165908448893
EFINKFQN	8	Unmodified	_EFINKFQN_					0	0	0		L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|21|2|sense	L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|21|2|sense	L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|21|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2763671875	2	520.263999	1038.51345	0.45088	0.00023458	0.3694	0.00019219	0.82029	0.00042676	520.263957592201	76.274	1.4343	76.242	75.69	77.125	-0.031479					91	52	2	0	0	0	0.33441	1	19855	19855		26.884	3.7352	1	375440			6658	12462	3434	3434	9159	9159					-0.004271165908448893
EFITVHSML	9	Oxidation (M)	_EFITVHSM(Oxidation (M))L_		EFITVHSM(1)L		EFITVHSM(78)L	0	0	1		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.7738647460938	2	546.773342	1091.53213	0.81053	0.00044318	0.34276	0.00018741	1.1533	0.00063059	546.7737001600871	50.862	0.59927	50.862	50.623	51.222	0					43	21	3	0	0	0	0.01083	1	11824	11824		78.149	52.75	1	750800			6659	3928	3435	3435	9160	9160		492			-0.009973230113246245
EFITVHSML	9	Oxidation (M)	_EFITVHSM(Oxidation (M))L_		EFITVHSM(1)L		EFITVHSM(44)L	0	0	1		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.7739868164062	2	546.773342	1091.53213	0.82608	0.00045168	0.35753	0.00019549	1.1836	0.00064717	546.7736404500016	50.854	0.48557	50.9	50.684	51.169	0.046577					38	17	3	0	0	0	0.07432	1	11824	11824		43.858	14.777	1	676280			6660	3928	3435	3435	9161	9161		492			-0.009973230113246245
EFITVHSML	9	Oxidation (M)	_EFITVHSM(Oxidation (M))L_		EFITVHSM(1)L		EFITVHSM(61)L	0	0	1		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7738647460938	2	546.773342	1091.53213	0.87319	0.00047744	0.36983	0.00020221	1.243	0.00067965	546.7735359226715	50.925	0.57115	50.934	50.701	51.272	0.0095673					42	21	3	0	0	0	0.027237	1	11849	11849		61.357	30.721	1	694070			6661	3928	3435	3435	9162	9162		492			-0.009973230113246245
EFKALLQNA	9	Unmodified	_EFKALLQNA_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.8158569335938	2	517.287474	1032.5604	0.21679	0.00011214	1.5903	0.00082264	1.8071	0.00093478	517.2881268116619	28.746	0.51983	28.742	28.438	28.957	-0.0042572					23	17	2	0	0	0	0.23784	1	5112	5112		13.906	4.5229	1	97259	+		6662	22992	3436	3436	9163	9163					0.04541742960282136
EFKALLQNA	9	Unmodified	_EFKALLQNA_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	517.287474	1032.5604	0.34312	0.00017749	2.0089	0.0010392	2.352	0.0012167	517.2883274493466	28.795	0.37386	28.795	28.578	28.952	0	0.013108	-0.00022429	NaN	13.906	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95691	+		6663	22992	3436	3436							0.04541742960282136
EFKRIQMKL	9	Unmodified	_EFKRIQMKL_					0	0	0			REV__ENST00000369976.5_1_1:109504997-109506026:-|nuORF	REV__ENST00000369976.5_1_1:109504997-109506026:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.8486328125	2	596.847176	1191.6798	0.50001	0.00029843	0.64566	0.00038536	1.1457	0.00068379	597.3483204217739	91.581	0.53647	91.672	91.454	91.99	0.090668					48	37	2	0	0	0	0.25938	1	24385	24385		4.3292	0.73274	1	105710	+		6664	20368	3437	3437	9164	9164					0.09162613313355905
EFLGLREALW	10	Unmodified	_EFLGLREALW_					0	0	0			REV__TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	REV__TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	617.3347778320312	2	617.334956	1232.65536	0.2628	0.00016223	-0.24131	-0.00014897	0.021493	1.3268E-05	617.3347844321019	71.307	0.89417	71.307	71.043	71.937	0					90	31	4	0	0	0	0.092344	2	18123	18123;18239		57.722	20.647	1	4337200	+		6665	16169	3438	3438	9165;9166	9165					0.04833676431439926
EFLGLREALW	10	Unmodified	_EFLGLREALW_					0	0	0			REV__TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	REV__TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	617.3348388671875	2	617.334956	1232.65536	0.14211	8.773E-05	-0.21092	-0.00013021	-0.068805	-4.2476E-05	617.3347982982511	71.246	0.96831	71.307	71.069	72.037	0.060776					87	34	4	0	0	0	0.19793	2	18111	18111;18157		45.7	18.814	1	3879000	+		6666	16169	3438	3438	9167;9168	9167					0.04833676431439926
EFLGLREALW	10	Unmodified	_EFLGLREALW_					0	0	0			REV__TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	REV__TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	617.3348388671875	2	617.334956	1232.65536	0.30784	0.00019004	-0.27865	-0.00017202	0.029192	1.8021E-05	617.3347687326801	71.349	1.0178	71.324	71.077	72.094	-0.024872					102	36	4	0	0	0	0.19793	2	18099	18099;18151		45.7	20.818	1	3678100	+		6667	16169	3438	3438	9169;9170	9169					0.04833676431439926
EFLHKNHLE	9	Unmodified	_EFLHKNHLE_					0	0	0			REV__nc|ENSG00000125386|P78312-6|FAM193A	REV__nc|ENSG00000125386|P78312-6|FAM193A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.8018188476562	2	583.80128	1165.58801	0.17497	0.00010215	0.48139	0.00028103	0.65636	0.00038318	583.801511421788	33.213	0.5613	33.213	32.895	33.456	0					45	19	3	0	0	0	0.29638	1	6447	6447		9.3831	0	1	322260	+		6668	15262	3439	3439	9171	9171					0.011836462205337739
EFLIPVSL	8	Unmodified	_EFLIPVSL_					0	0	0			REV__ENSG00000105186|ENST00000306065|ANKRD27	REV__ENSG00000105186|ENST00000306065|ANKRD27	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.25555419921875	2	459.270761	916.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.334	1	70.334	69.834	70.834	0								0	0	0	0.29147	1	17821	17821		30.225	7.0764	1		+		6669	14441	3440	3440	9172	9172					0.06536741188369888
EFLKAIQDGTI	11	Unmodified	_EFLKAIQDGTI_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.548583984375	3	412.227444	1233.6605	-0.10459	-4.3113E-05	-0.70803	-0.00029187	-0.81262	-0.00033498	412.22694977462214	16.765	1.1983	16.765	16.491	17.69	0					66	41	3	0	0	0	0.3299	1	1509	1509		9.7643	1.8189	1	306000			6670	7915	3441	3441	9173	9173					0.05301935503439381
EFLKAIQDGTI	11	Unmodified	_EFLKAIQDGTI_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.5486145019531	3	412.227444	1233.6605	0.01234	5.087E-06	-0.14997	-6.1821E-05	-0.13763	-5.6734E-05	412.22712025278906	16.903	1.185	16.789	16.421	17.606	-0.11434					79	42	4	0	0	0	0.3299	1	1555	1555		9.7643	1.8189	1	272790			6671	7915	3441	3441	9174	9174					0.05301935503439381
EFLLVHHLQH	10	Unmodified	_EFLLVHHLQH_					0	0	0		ENST00000420969.1_1_2:162360026-162361742:-|nuORF	ENST00000420969.1_1_2:162360026-162361742:-|nuORF	ENST00000420969.1_1_2:162360026-162361742:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.8474731445312	2	636.846022	1271.67749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.179	1	12.179	11.679	12.679	0								0	0	0	0.38202	1	49	49		0.40072	0	1				6672	10368	3442	3442	9175	9175					0.052519008998842764
EFLPRRNI	8	Unmodified	_EFLPRRNI_					0	0	0		nc|ENSG00000003402|O15519-10|CFLAR	nc|ENSG00000003402|O15519-10|CFLAR	nc|ENSG00000003402|O15519-10|CFLAR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.790283203125	2	522.801083	1043.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.058	1	55.038	54.538	55.538	-0.019081								0	0	0	0.29147	1	13114	13114		30.225	8.4782	1				6673	12554	3443	3443	9176	9176					0.06756271291305893
EFLRDQPQF	9	Unmodified	_EFLRDQPQF_					0	0	0		nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A;nc|ENSG00000179262|P54725-2|RAD23A	nc|ENSG00000179262|P54725-3|RAD23A	nc|ENSG00000179262|P54725-3|RAD23A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.3426513671875	2	590.293288	1178.57202	0.55065	0.00032504	-0.0081672	-4.821E-06	0.54248	0.00032022	590.2928408618	51.251	0.56412	51.251	51.055	51.619	0					28	20	2	0	0	0	0.20167	1	11916	11916		22.736	0	1	312850			6674	7111	3444	3444	9177	9177					-0.010120600164100324
EFLRDQPQF	9	Unmodified	_EFLRDQPQF_					0	0	0		nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A;nc|ENSG00000179262|P54725-2|RAD23A	nc|ENSG00000179262|P54725-3|RAD23A	nc|ENSG00000179262|P54725-3|RAD23A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.3421020507812	2	590.293288	1178.57202	0.41267	0.00024359	0.19955	0.00011779	0.61222	0.00036139	590.2930322912393	51.272	0.55707	51.319	51.064	51.621	0.046574					26	20	2	0	0	0	0.075356	1	11938	11938		63.961	44.704	1	263800			6675	7111	3444	3444	9178	9178					-0.010120600164100324
EFLRDQPQF	9	Unmodified	_EFLRDQPQF_					0	0	0		nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A;nc|ENSG00000179262|P54725-2|RAD23A	nc|ENSG00000179262|P54725-3|RAD23A	nc|ENSG00000179262|P54725-3|RAD23A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.3422241210938	2	590.293288	1178.57202	0.47037	0.00027765	0.33051	0.0001951	0.80088	0.00047275	590.2928692345682	51.429	0.41721	51.438	51.169	51.587	0.0095634					23	15	2	0	0	0	0.1558	1	11942	11942		34.932	9.5328	1	277560			6676	7111	3444	3444	9179	9179					-0.010120600164100324
EFLREQDSDE	10	Unmodified	_EFLREQDSDE_					0	0	0			REV__nc|ENSG00000150893|Q5SZK8-2|FREM2	REV__nc|ENSG00000150893|Q5SZK8-2|FREM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.2764892578125	2	634.275489	1266.53642	0.34382	0.00021808	0.97204	0.00061654	1.3159	0.00083462	634.2761768102437	33.547	1.1648	33.613	33.358	34.522	0.066704					52	41	2	0	0	0	0.40106	1	6698	6698		3.2813	0.54611	1	190910	+		6677	16515	3445	3445	9180	9180					-0.0861818705470796
EFLREQDSDE	10	Unmodified	_EFLREQDSDE_					0	0	0			REV__nc|ENSG00000150893|Q5SZK8-2|FREM2	REV__nc|ENSG00000150893|Q5SZK8-2|FREM2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	634.275489	1266.53642	0.59457	0.00037712	0.45285	0.00028723	1.0474	0.00066435	634.2759227828187	33.745	0.63029	33.745	33.393	34.023	0	0.058297	-5.1363E-05	NaN	3.2813	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203550	+		6678	16515	3445	3445							-0.0861818705470796
EFLREQDSDE	10	Unmodified	_EFLREQDSDE_					0	0	0			REV__nc|ENSG00000150893|Q5SZK8-2|FREM2	REV__nc|ENSG00000150893|Q5SZK8-2|FREM2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	634.275489	1266.53642	0.84416	0.00053543	0.29488	0.00018703	1.139	0.00072246	634.2759095130212	33.636	0.93956	33.703	33.405	34.344	0.06636	0.01561	-0.00025176	NaN	3.2813	57	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203220	+		6679	16515	3445	3445							-0.0861818705470796
EFLRKKLI	8	Unmodified	_EFLRKKLI_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2640991210938	2	523.839677	1045.6648	0.64795	0.00033942	-1.5134	-0.00079277	-0.86543	-0.00045335	523.8387148684717	52.711	0.27914	52.761	52.657	52.936	0.050575					12	9	2	0	0	0	0.34247	1	12416	12416		8.5933	0	1	100210			6680	7937	3446	3446	9181	9181					0.14379489507655308
EFLRPLSL	8	Unmodified	_EFLRPLSL_					0	0	0			REV__ENST00000551521.5_2_12:95502297-95510651:-|nuORF	REV__ENST00000551521.5_2_12:95502297-95510651:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.297607421875	2	487.78711	973.559667	0.31417	0.00015325	-0.82287	-0.00040138	-0.50869	-0.00024813	487.7871896160843	58.016	0.90646	58.102	57.765	58.671	0.085621					43	32	2	0	0	0	0.30157	2	14083	14083;14102		30.637	5.2372	1	327610	+		6681	22208	3447	3447	9182;9183	9182					0.0718294831123103
EFLTKTAKF	9	Unmodified	_EFLTKTAKF_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8056030273438	2	542.8055	1083.59645	0.36322	0.00019716	-0.40095	-0.00021764	-0.037726	-2.0478E-05	542.8051336297261	38.3	0.95078	38.3	37.646	38.597	0					62	33	3	0	0	0	0.0041491	1	7984	7984		93.166	27.931	1	1365000			6682	1632;8715	3448	3448	9184	9184					0.05799200137130356
EFLTKTAKF	9	Unmodified	_EFLTKTAKF_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8056030273438	2	542.8055	1083.59645	0.60475	0.00032826	-0.41124	-0.00022322	0.19351	0.00010504	542.8052965691187	38.251	0.60114	38.342	38.072	38.673	0.090881					64	21	4	0	0	0	0.0073901	1	7980	7980		83.429	39.57	1	1229500			6683	1632;8715	3448	3448	9185	9185					0.05799200137130356
EFLTKTAKF	9	Unmodified	_EFLTKTAKF_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8057861328125	2	542.8055	1083.59645	0.55401	0.00030072	-0.24005	-0.0001303	0.31397	0.00017042	542.8053773343594	38.205	0.64117	38.302	37.981	38.622	0.097527					69	22	4	0	0	0	0.015924	1	7957	7957		70.332	34.205	1	1196800			6684	1632;8715	3448	3448	9186	9186					0.05799200137130356
EFLWNYIS	8	Unmodified	_EFLWNYIS_					0	0	0			REV__L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|1|1|sense	REV__L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|1|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2799072265625	2	536.260925	1070.5073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.724	1	57.809	57.309	58.309	0.085621								0	0	0	0.33122	1	13946	13946		23.148	2.2772	1		+		6685	22801	3449	3449	9187	9187					-0.025136348223895766
EFMLRRRVH	9	Unmodified	_EFMLRRRVH_					0	0	0			REV__ENST00000527981.1_1_14:59950407-59951094:-|nuORF	REV__ENST00000527981.1_1_14:59950407-59951094:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3436889648438	2	622.345666	1242.67678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.66	1	117.68	117.18	118.18	0.023476								0	0	0	0.2672	1	30491	30491		0.52476	0.066424	1		+		6686	21981	3450	3450	9188	9188					0.06514782979206757
EFMPQGAVF	9	Oxidation (M)	_EFM(Oxidation (M))PQGAVF_		EFM(1)PQGAVF		EFM(63)PQGAVF	0	0	1		GLG1|p.I688*|1|0.19|ENSG00000090863|chr16:74472402-74472402|T/-|frameshift_variant;ENSG00000090863|ENST00000422840|GLG1;nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1	GLG1|p.I688*|1|0.19|ENSG00000090863|chr16:74472402-74472402|T/-|frameshift_variant	GLG1|p.I688*|1|0.19|ENSG00000090863|chr16:74472402-74472402|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.239501953125	2	521.239135	1040.46372	0.79509	0.00041443	-0.25672	-0.00013381	0.53837	0.00028062	521.2389393064008	60.847	0.55571	60.847	60.548	61.103	0					46	19	3	0	0	0	0.023967	1	14912	14912		62.573	26.528	1	1177600			6687	1390	3451	3451	9189	9189		174			-0.05489567591166633
EFMPQGAVF	9	Oxidation (M)	_EFM(Oxidation (M))PQGAVF_		EFM(1)PQGAVF		EFM(65)PQGAVF	0	0	1		GLG1|p.I688*|1|0.19|ENSG00000090863|chr16:74472402-74472402|T/-|frameshift_variant;ENSG00000090863|ENST00000422840|GLG1;nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1	GLG1|p.I688*|1|0.19|ENSG00000090863|chr16:74472402-74472402|T/-|frameshift_variant	GLG1|p.I688*|1|0.19|ENSG00000090863|chr16:74472402-74472402|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.75830078125	2	521.239135	1040.46372	0.72456	0.00037767	0.0009108	4.7474E-07	0.72547	0.00037814	521.2390248451537	60.679	0.51266	60.776	60.552	61.065	0.096985					42	17	3	0	0	0	0.066761	1	14835	14835		65.235	35.01	1	1086000			6688	1390	3451	3451	9190	9190		174			-0.05489567591166633
EFMPQGAVF	9	Oxidation (M)	_EFM(Oxidation (M))PQGAVF_		EFM(1)PQGAVF		EFM(54)PQGAVF	0	0	1		GLG1|p.I688*|1|0.19|ENSG00000090863|chr16:74472402-74472402|T/-|frameshift_variant;ENSG00000090863|ENST00000422840|GLG1;nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1	GLG1|p.I688*|1|0.19|ENSG00000090863|chr16:74472402-74472402|T/-|frameshift_variant	GLG1|p.I688*|1|0.19|ENSG00000090863|chr16:74472402-74472402|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2393188476562	2	521.239135	1040.46372	0.78918	0.00041135	0.02528	1.3177E-05	0.81446	0.00042453	521.2391031010917	60.793	0.45174	60.784	60.516	60.968	-0.0094528					42	16	3	0	0	0	0.047483	1	14916	14916		53.833	21.716	1	1181100			6689	1390	3451	3451	9191	9191		174			-0.05489567591166633
EFNLELFIF	9	Unmodified	_EFNLELFIF_					0	0	0			REV__ENST00000535812.1_1_12:66562688-66563015:-|nuORF	REV__ENST00000535812.1_1_12:66562688-66563015:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.2252197265625	2	586.305332	1170.59611	0.44294	0.0002597	-1.0385	-0.00060889	-0.59558	-0.00034919	586.8060280008881	67.801	0.45483	67.879	67.657	68.112	0.078041					18	15	2	0	0	0	0.17611	1	17019	17019		34.102	0	1	154500	+		6690	22072	3452	3452	9192	9192					0.017637804172636606
EFNLSREGKP	10	Unmodified	_EFNLSREGKP_					0	0	0			REV__nc|ENSG00000105954|Q9HCQ7-2|NPVF	REV__nc|ENSG00000105954|Q9HCQ7-2|NPVF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8035278320312	2	588.80402	1175.59349	0.2556	0.0001505	-1.5893	-0.00093577	-1.3337	-0.00078527	588.8030574534121	19.56	0.6654	19.56	19.35	20.016	0					42	23	2	0	0	0	0.40532	1	2354	2354		2.4985	1.0166	1	34290	+		6691	14496	3453	3453	9193	9193					0.012713250123397302
EFNLSREGKP	10	Unmodified	_EFNLSREGKP_					0	0	0			REV__nc|ENSG00000105954|Q9HCQ7-2|NPVF	REV__nc|ENSG00000105954|Q9HCQ7-2|NPVF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.8032836914062	2	588.80402	1175.59349	0.37307	0.00021967	-1.7449	-0.0010274	-1.3718	-0.00080773	588.8028178445257	19.804	0.58371	19.689	19.514	20.098	-0.11592					27	19	2	0	0	0	0.40532	1	2404	2404		2.4985	1.0166	1	38315	+		6692	14496	3453	3453	9194	9194					0.012713250123397302
EFNLSREGKP	10	Unmodified	_EFNLSREGKP_					0	0	0			REV__nc|ENSG00000105954|Q9HCQ7-2|NPVF	REV__nc|ENSG00000105954|Q9HCQ7-2|NPVF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	588.80402	1175.59349	0.37307	0.00021967	-1.7449	-0.0010274	-1.3718	-0.00080773	588.8028178445257	19.804	0.58371	19.689	19.514	20.098	-0.11592	0.064301	-9.5209E-05	NaN	2.4985	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38315	+		6693	14496	3453	3453							0.012713250123397302
EFNSTPAVF	9	Unmodified	_EFNSTPAVF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.297607421875	2	506.242732	1010.47091	0.16823	8.5165E-05	0.93394	0.0004728	1.1022	0.00055797	506.24329114391094	61.211	0.4648	61.211	61.022	61.487	0					24	17	2	0	0	0	0.19839	1	15010	15010		21.747	0	1	514490			6694	1112	3454	3454	9195	9195					-0.033905117191011414
EFNSTPAVF	9	Unmodified	_EFNSTPAVF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.29718017578125	2	506.242732	1010.47091	0.11313	5.727E-05	1.003	0.00050778	1.1162	0.00056505	506.2433308979003	61.154	0.66367	61.251	61.065	61.729	0.096985					33	24	2	0	0	0	0.19839	1	14968	14968		28.487	3.813	1	493600			6695	1112	3454	3454	9196	9196					-0.033905117191011414
EFPPGTPRF	9	Unmodified	_EFPPGTPRF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7642211914062	2	524.266542	1046.51853	0.80971	0.0004245	-0.58932	-0.00030896	0.22039	0.00011554	524.2661166355393	54.753	0.74529	54.737	54.282	55.028	-0.015919					38	26	2	0	0	0	0.23749	1	12907	12907		10.8	1.4164	1	375020			6696	8602	3455	3455	9197	9197					-0.0028681272824542248
EFQKLGSAF	9	Unmodified	_EFQKLGSAF_					0	0	0		ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7843017578125	2	513.766374	1025.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.159	1	79.221	78.721	79.721	0.061417								0	0	0	0.22666	1	20503	20503		13.906	1.6654	1				6697	6728	3456	3456	9198	9198					0.0064576755189591495
EFQKLGSAF	9	Unmodified	_EFQKLGSAF_					0	0	0		ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7844848632812	2	513.766374	1025.5182	0.3503	0.00017997	-1.6476	-0.00084649	-1.2973	-0.00066652	514.2660267582469	79.601	0.34085	79.572	79.327	79.668	-0.028931					15	13	2	0	0	0	0.26612	1	20587	20587		13.906	0	1	86813			6698	6728	3456	3456	9199	9199					0.0064576755189591495
EFQLLKRLS	9	Unmodified	_EFQLLKRLS_					0	0	0			REV__ENST00000553315.1_2_14:75373719-75374108:-|nuORF	REV__ENST00000553315.1_2_14:75373719-75374108:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2794189453125	2	567.337498	1132.66044	0.14317	8.1223E-05	-0.19148	-0.00010863	-0.048314	-2.741E-05	567.8374438762646	64.928	0.33227	64.917	64.69	65.022	-0.011337					13	11	2	0	0	0	0.25323	1	16122	16122		10.074	0.6908	1	90413	+		6699	22223	3457	3457	9200	9200					0.099419802940929
EFQWKMKVN	9	Unmodified	_EFQWKMKVN_					0	0	0			REV__ENSG00000198763|ENST00000361453|MT-ND2	REV__ENSG00000198763|ENST00000361453|MT-ND2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.5609130859375	3	403.874348	1208.60121	-0.31402	-0.00012682	0.20811	8.4049E-05	-0.10591	-4.2776E-05	403.87286121522186	23.22	0.86712	23.22	22.675	23.542	0					52	29	3	0	0	0	0.25756	1	3466	3466		7.1017	1.3183	1	86626	+		6700	18857	3458	3458	9201	9201					0.005257610082480824
EFRLKSDEP	9	Unmodified	_EFRLKSDEP_					0	0	0			REV__ENSG00000135336|ENST00000392844|ORC3	REV__ENSG00000135336|ENST00000392844|ORC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8057250976562	2	560.785296	1119.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.843	1	71.815	71.315	72.315	-0.027275								0	0	0	0.16757	1	18270	18270		30.637	0.41173	1		+		6701	15734	3459	3459	9202	9202					0.0010423374671972852
EFRQVLFDIW	10	Unmodified	_EFRQVLFDIW_					0	0	0			REV__PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;REV__nc|ENSG00000183506|A4QPH2-2|PI4KAP2	REV__PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7634582519531	3	451.571434	1351.69247	0.23536	0.00010628	-2.8181	-0.0012726	-2.5828	-0.0011663	451.90464768460953	87.102	0.19391	87.19	87.039	87.233	0.08709					12	7	2	0	0	0	0.32148	1	22921	22921		1.4551	0.12547	1	54913	+		6702	19181;20266	3460	3460	9203	9203					0.030693479772480714
EFRRKLENQR	10	Unmodified	_EFRRKLENQR_					0	0	0			REV__ENST00000490798.5_1_20:43550276-43564067:+|nuORF	REV__ENST00000490798.5_1_20:43550276-43564067:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.25555419921875	3	459.25662	1374.74803	0.09099	4.1788E-05	-1.7801	-0.00081753	-1.6891	-0.00077574	459.25605060301	70.368	0.85974	70.368	70.103	70.963	0					59	30	3	0	0	0	0.31651	1	17821	17821		11.518	8.8866	1	586430	+		6703	14246	3461	3461	9204	9204					0.07564574217553854
EFRRKLENQR	10	Unmodified	_EFRRKLENQR_					0	0	0			REV__ENST00000490798.5_1_20:43550276-43564067:+|nuORF	REV__ENST00000490798.5_1_20:43550276-43564067:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2557067871094	3	459.25662	1374.74803	0.12721	5.8421E-05	-1.6134	-0.00074096	-1.4862	-0.00068254	459.5898983354675	70.425	1.2478	70.486	69.821	71.069	0.060783					73	44	3	0	0	0	0.36279	1	17827	17827		10.315	2.3698	1	812220	+		6704	14246	3461	3461	9205	9205					0.07564574217553854
EFRRKLENQR	10	Unmodified	_EFRRKLENQR_					0	0	0			REV__ENST00000490798.5_1_20:43550276-43564067:+|nuORF	REV__ENST00000490798.5_1_20:43550276-43564067:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	459.25662	1374.74803	0.12721	5.8421E-05	-1.6134	-0.00074096	-1.4862	-0.00068254	459.5898983354675	70.425	1.2478	70.486	69.821	71.069	0.060783	0.050172	0.00036469	NaN	11.518	73	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	812220	+		6705	14246	3461	3461							0.07564574217553854
EFRRKLENQR	10	Unmodified	_EFRRKLENQR_					0	0	0			REV__ENST00000490798.5_1_20:43550276-43564067:+|nuORF	REV__ENST00000490798.5_1_20:43550276-43564067:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	459.25662	1374.74803	0.22318	0.0001025	-2.0398	-0.0009368	-1.8166	-0.0008343	459.25586586147836	70.478	0.97794	70.453	70.047	71.025	-0.024864	0.017342	-0.00022284	NaN	11.518	74	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	866060	+		6706	14246	3461	3461							0.07564574217553854
EFSLEGKAKL	10	Unmodified	_EFSLEGKAKL_					0	0	0			REV__ENSG00000132635|ENST00000360652|PCED1A	REV__ENSG00000132635|ENST00000360652|PCED1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2844848632812	2	561.313689	1120.61282	0.64507	0.00036209	0.30145	0.00016921	0.94652	0.0005313	561.3142616378076	54.923	0.80304	54.986	54.459	55.262	0.063202					42	29	2	0	0	0	0.31691	1	12955	12955		5.7319	0	1	714880	+		6707	15584	3462	3462	9206	9206					0.05734281303261923
EFTGVSGSFKE	11	Unmodified	_EFTGVSGSFKE_					0	0	0			REV__ENST00000320954.10_2_3:33185806-33186025:+|nuORF	REV__ENST00000320954.10_2_3:33185806-33186025:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2831420898438	2	594.282586	1186.55062	0.56855	0.00033788	-0.032837	-1.9515E-05	0.53572	0.00031837	594.282277807566	38.684	0.33404	38.781	38.65	38.984	0.097527					25	11	3	0	0	0	0.26921	1	8102	8102		24.991	1.2012	1	253890	+		6708	19964	3463	3463	9207	9207					-0.03519489835730383
EFTGVSGSFKE	11	Unmodified	_EFTGVSGSFKE_					0	0	0			REV__ENST00000320954.10_2_3:33185806-33186025:+|nuORF	REV__ENST00000320954.10_2_3:33185806-33186025:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	594.282586	1186.55062	0.063451	3.7708E-05	-0.15852	-9.4207E-05	-0.095071	-5.6499E-05	594.2823108395305	38.815	0.41684	38.815	38.623	39.04	0	0.019599	-8.5594E-05	NaN	24.991	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206190	+		6709	19964	3463	3463							-0.03519489835730383
EFTGVSGSFKE	11	Unmodified	_EFTGVSGSFKE_					0	0	0			REV__ENST00000320954.10_2_3:33185806-33186025:+|nuORF	REV__ENST00000320954.10_2_3:33185806-33186025:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	594.282586	1186.55062	0.44295	0.00026324	-0.066479	-3.9507E-05	0.37648	0.00022373	594.2824096175717	38.698	0.32518	38.789	38.647	38.972	0.090881	-0.0057854	2.3805E-05	NaN	24.991	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251070	+		6710	19964	3463	3463							-0.03519489835730383
EFTHVQFLK	9	Unmodified	_EFTHVQFLK_					0	0	0			REV__ENSG00000150403|ENST00000434316|TMCO3	REV__ENSG00000150403|ENST00000434316|TMCO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.2899169921875	2	574.808574	1147.60259	0.3363	0.00019331	-1.2048	-0.00069251	-0.86846	-0.0004992	575.310217483687	66.044	0.3687	66.03	65.824	66.193	-0.013596					16	12	2	0	0	0	0.23784	1	16471	16471		19.257	1.1106	1	51438	+		6711	16496	3464	3464	9208	9208					0.03469718368660324
EFTLQLRVF	9	Unmodified	_EFTLQLRVF_					0	0	0			REV__nc|ENSG00000151623|P08235-4|NR3C2	REV__nc|ENSG00000151623|P08235-4|NR3C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.30859375	2	576.824224	1151.63389	0.013105	7.5595E-06	-1.0899	-0.0006287	-1.0768	-0.00062114	577.3250776051776	61.927	0.82455	61.919	61.477	62.302	-0.0085526					51	29	2	0	0	0	0.24913	1	15305	15305		12.532	4.6214	1	256260	+		6712	16546	3465	3465	9209	9209					0.06414291402734307
EFTPHHAGF	9	Unmodified	_EFTPHHAGF_					0	0	0		nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C;ENST00000598457.5_1_19:48593588-48602975:-|nuORF;ENST00000599239.5_1_19:48565437-48599986:-|nuORF	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.7407836914062	2	521.740691	1041.46683	0.54854	0.00028619	-0.19441	-0.00010143	0.35413	0.00018476	521.7404773386065	30.153	1.1467	30.153	29.86	31.007	0					91	40	4	0	0	0	2.3311E-08	3	5455	5455;5502;5557		179.23	179.23	1	1424300			6713	1988	3466	3466	9210;9211;9212	9210					-0.05224556422149362
EFTPHHAGF	9	Unmodified	_EFTPHHAGF_					0	0	0		nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C;ENST00000598457.5_1_19:48593588-48602975:-|nuORF;ENST00000599239.5_1_19:48565437-48599986:-|nuORF	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.74072265625	2	521.740691	1041.46683	0.46421	0.0002422	-0.20176	-0.00010527	0.26245	0.00013693	521.7404780160016	30.094	0.87568	30.122	29.845	30.721	0.027948					81	30	4	0	0	0	2.3311E-08	2	5449	5449;5502		179.23	179.23	1	1227300			6714	1988	3466	3466	9213;9214	9213					-0.05224556422149362
EFTPHHAGF	9	Unmodified	_EFTPHHAGF_					0	0	0		nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C;ENST00000598457.5_1_19:48593588-48602975:-|nuORF;ENST00000599239.5_1_19:48565437-48599986:-|nuORF	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.7407836914062	2	521.740691	1041.46683	0.10831	5.6511E-05	0.071382	3.7243E-05	0.17969	9.3754E-05	521.7406551804065	30.134	0.9995	30.162	29.894	30.893	0.027157					79	34	4	0	0	0	4.6753E-07	2	5498	5449;5498		161.89	161.89	1	1400900			6715	1988	3466	3466	9215;9216	9216					-0.05224556422149362
EFTRFTLEV	9	Unmodified	_EFTRFTLEV_					0	0	0			REV__ENSG00000095587|ENST00000357947|TLL2	REV__ENSG00000095587|ENST00000357947|TLL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2799072265625	2	571.298039	1140.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.241	1	54.225	53.725	54.725	-0.015923								0	0	0	0.22065	1	12861	12861		15.847	3.3156	1		+		6716	14104	3467	3467	9217	9217					0.016857082691331016
EFVAKGHLF	9	Unmodified	_EFVAKGHLF_					0	0	0		ENSG00000130772|ENST00000373842|MED18;MED18|p.H127D|1|0.26|ENSG00000130772|chr1:28334722-28334722|C/G|missense_variant	ENSG00000130772|ENST00000373842|MED18	ENSG00000130772|ENST00000373842|MED18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2847290039062	2	524.284734	1046.55492	0.23099	0.00012111	-0.39704	-0.00020816	-0.16605	-8.7055E-05	524.2845053208748	42.518	1.036	42.518	42.221	43.257	0					90	37	4	0	0	0	0.0037552	2	9246	9246;9294		96.285	62.182	1	3246600			6717	3512	3468	3468	9218;9219	9218					0.03350064168466815
EFVAKGHLF	9	Unmodified	_EFVAKGHLF_					0	0	0		ENSG00000130772|ENST00000373842|MED18;MED18|p.H127D|1|0.26|ENSG00000130772|chr1:28334722-28334722|C/G|missense_variant	ENSG00000130772|ENST00000373842|MED18	ENSG00000130772|ENST00000373842|MED18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2846069335938	2	524.284734	1046.55492	0.46363	0.00024307	-0.66143	-0.00034678	-0.1978	-0.0001037	524.2843705166099	42.313	1.1796	42.398	42.034	43.214	0.085201					90	42	4	0	0	0	0.0083926	2	9205	9157;9205		81.89	47.788	1	3456400			6718	3512	3468	3468	9220;9221	9221					0.03350064168466815
EFVAKGHLF	9	Unmodified	_EFVAKGHLF_					0	0	0		ENSG00000130772|ENST00000373842|MED18;MED18|p.H127D|1|0.26|ENSG00000130772|chr1:28334722-28334722|C/G|missense_variant	ENSG00000130772|ENST00000373842|MED18	ENSG00000130772|ENST00000373842|MED18	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.284734	1046.55492	0.54818	0.0002874	-0.6623	-0.00034723	-0.11412	-5.983E-05	524.284337294472	42.2	1.0877	42.292	41.981	43.069	0.091362	-0.11075	-0.00012175	NaN	96.285	86	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3374300			6719	3512	3468	3468							0.03350064168466815
EFVKYYKQL	9	Unmodified	_EFVKYYKQL_					0	0	0		ENSG00000159459|ENST00000290650|UBR1;UBR1|p.S597Vfs*6|1|0.11|ENSG00000159459|chr15:43043276-43043277|-/T|frameshift_variant;nc|ENSG00000159459|Q8IWV7-2|UBR1	ENSG00000159459|ENST00000290650|UBR1	ENSG00000159459|ENST00000290650|UBR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.9236145019531	3	406.557013	1216.64921	-1.0972	-0.00044607	-3.5977	-0.0014627	-4.6949	-0.0019088	406.5556829024175	34.488	0.16062	34.563	34.444	34.604	0.075306					8	5	2	0	0	0	0.25527	1	6771	6771		8.7454	0.58988	1	36173			6720	5410	3469	3469	9222	9222					0.04955158199959442
EFVLRMTRNLP	11	Unmodified	_EFVLRMTRNLP_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2558898925781	3	459.25534	1374.74419	0.22318	0.0001025	0.74717	0.00034314	0.97035	0.00044564	459.25586586147836	70.478	0.97794	70.453	70.047	71.025	-0.024864					74	34	3	0	0	0	0.41517	1	17826	17826		9.2438	0	1	866060	+		6721	18519	3470	3470	9223	9223					0.07180768399484805
EFVQSIVYF	9	Unmodified	_EFVQSIVYF_					0	0	0			REV__ENSG00000196937|ENST00000359943|FAM3C	REV__ENSG00000196937|ENST00000359943|FAM3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.8158569335938	2	566.289682	1130.56481	0.61516	0.00034836	-1.3688	-0.00077515	-0.75367	-0.00042679	566.2892175013984	84.546	0.61156	84.627	84.324	84.935	0.080879					34	23	3	0	0	0	0.2322	1	22190	22190		20.454	1.1966	1	103630	+		6722	18698	3471	3471	9224	9224					0.004752073831923553
EFWSWKWF	8	Unmodified	_EFWSWKWF_					0	0	0			REV__chr5:147850542-147901629|138|20.25|0.11|7.49|-|0|TE_info:MamRep1527,MamRep1527_dup454,LTR,LTR,acceptor,-,147850155,147850542|None,C5orf46|2	REV__chr5:147850542-147901629|138|20.25|0.11|7.49|-|0|TE_info:MamRep1527,MamRep1527_dup454,LTR,LTR,acceptor,-,147850155,147850542|None,C5orf46|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.547119140625	3	405.858915	1214.55492	0.096639	3.9222E-05	3.1225	0.0012673	3.2191	0.0013065	406.19485169592923	33.633	0.13891	33.633	33.589	33.728	0					5	4	2	0	0	0	0.34131	1	6542	6542		9.3831	0.93882	1	49639	+		6723	13202	3472	3472	9225	9225					-0.04377935831553259
EFYAVPGFP	9	Unmodified	_EFYAVPGFP_					0	0	0		nc|ENSG00000078328|Q9NWB1-3|RBFOX1	nc|ENSG00000078328|Q9NWB1-3|RBFOX1	nc|ENSG00000078328|Q9NWB1-3|RBFOX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2582397460938	2	513.750193	1025.48583	0.15599	8.0142E-05	-0.90723	-0.00046609	-0.75123	-0.00038595	513.7509035243609	73.492	0.68466	73.492	73.081	73.766	0					35	24	2	0	0	0	0.23783	1	18738	18738		18.135	0	1	194100			6724	12593	3473	3473	9226	9226					-0.025890198510978735
EFYCDSELF	9	Unmodified	_EFYCDSELF_					0	0	0			REV__nc|ENSG00000132554|Q8NE09-2|RGS22	REV__nc|ENSG00000132554|Q8NE09-2|RGS22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.8240356445312	2	576.73134	1151.44813	0.27472	0.00015844	-2.1435	-0.0012362	-1.8687	-0.0010778	576.7301338847727	62.8	0.35061	62.8	62.58	62.93	0					20	12	2	0	0	0	0.24739	1	15525	15525		8.5933	0.68312	1	213060	+		6725	15580	3474	3474	9227	9227					-0.12153898898895932
EFYCDSELF	9	Unmodified	_EFYCDSELF_					0	0	0			REV__nc|ENSG00000132554|Q8NE09-2|RGS22	REV__nc|ENSG00000132554|Q8NE09-2|RGS22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8241577148438	2	576.73134	1151.44813	0.4108	0.00023692	-1.8918	-0.0010911	-1.481	-0.00085414	576.7302972324065	62.638	0.49758	62.735	62.546	63.043	0.096985					25	17	2	0	0	0	0.23783	1	15486	15486		12.532	8.2023	1	168910	+		6726	15580	3474	3474	9228	9228					-0.12153898898895932
EFYCHPYF	8	Unmodified	_EFYCHPYF_					0	0	0		ENSG00000268738|ENST00000598963|HSFX2;ENSG00000171116|ENST00000370416|HSFX1	ENSG00000268738|ENST00000598963|HSFX2	ENSG00000268738|ENST00000598963|HSFX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8299560546875	2	553.226028	1104.4375	0.29415	0.00016273	0.42389	0.00023451	0.71804	0.00039724	553.2262284728982	82.175	0.49794	82.244	81.95	82.448	0.068993					48	20	3	0	0	0	0.3439	1	21382	21382		0.79363	0.79363	1	622470			6727	6515	3475	3475	9229	9229					-0.11053836762675928
EGAEEGRGHG	10	Unmodified	_EGAEEGRGHG_					0	0	0		ENST00000568485.1_1_16:67226831-67227071:+|nuORF;ENST00000567007.5_1_16:67226831-67232023:+|nuORF	ENST00000568485.1_1_16:67226831-67227071:+|nuORF	ENST00000568485.1_1_16:67226831-67227071:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.23968505859375	2	499.717944	997.421336	0.20281	0.00010135	0.46344	0.00023159	0.66625	0.00033294	499.7184846916832	16.087	0.61912	16.087	15.842	16.461	0					50	21	4	0	0	0	0.31889	1	1280	1280		6.2058	0.97511	1	159540			6728	11990	3476	3476	9230	9230					-0.0774782667516547
EGAILGAFL	9	Unmodified	_EGAILGAFL_					0	0	0		ENSG00000230268|ENST00000473520|SSU72L6	ENSG00000230268|ENST00000473520|SSU72L6	ENSG00000230268|ENST00000473520|SSU72L6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.7542724609375	2	445.752736	889.490919	0.4887	0.00021784	4.186	0.0018659	4.6747	0.0020837	445.75407910671356	44.859	1.086	44.859	44.28	45.366	0					73	39	3	0	0	0	0.0040585	2	9959	9959;10008		93.883	32.526	1	1561900			6729	8467	3477	3477	9231;9232	9231					0.04175284011523672
EGAIMLLK	8	Oxidation (M)	_EGAIM(Oxidation (M))LLK_		EGAIM(1)LLK		EGAIM(57)LLK	0	0	1			REV__nc|ENSG00000122966|O14578-3|CIT	REV__nc|ENSG00000122966|O14578-3|CIT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.75433349609375	2	445.754421	889.494289	0.45234	0.00020163	-0.29995	-0.0001337	0.15239	6.7928E-05	445.7541767991819	44.711	0.96912	44.786	44.502	45.471	0.075047					77	35	3	0	0	0	0.11736	1	9930	9930		57.471	13.064	1	1454300	+		6730	15177	3478	3478	9233	9233		995			0.045122107938937006
EGALLARGF	9	Unmodified	_EGALLARGF_					0	0	0			REV__ENSG00000132003|ENST00000590508|ZSWIM4	REV__ENSG00000132003|ENST00000590508|ZSWIM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7223205566406	2	467.261259	932.507966	0.20584	9.6181E-05	0.80921	0.00037811	1.0151	0.00047429	467.2611525933825	70.407	1.1259	70.382	69.618	70.744	-0.024872					56	40	2	0	0	0	0.25066	1	17680	17680		7.2892	0	1	112820	+		6731	15545	3479	3479	9234	9234					0.039012046173297676
EGALSWDSL	9	Unmodified	_EGALSWDSL_					0	0	0			REV__nc|ENSG00000114416|P51114-2|FXR1	REV__nc|ENSG00000114416|P51114-2|FXR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2703552246094	2	489.232364	976.450176	0.32369	0.00015836	-0.10334	-5.0558E-05	0.22035	0.0001078	489.2323690592139	58.978	0.72058	59.069	58.74	59.46	0.091305					32	25	2	0	0	0	0.2451	1	14445	14445		15.847	10.617	1	148770	+		6732	14833	3480	3480	9235	9235					-0.0389910209877371
EGALSWDSL	9	Unmodified	_EGALSWDSL_					0	0	0			REV__nc|ENSG00000114416|P51114-2|FXR1	REV__nc|ENSG00000114416|P51114-2|FXR1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	489.232364	976.450176	0.25218	0.00012338	0.36671	0.0001794	0.61889	0.00030278	489.2325227401196	59.17	0.46208	59.17	58.864	59.326	0	0.058099	0.00035148	NaN	15.847	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169100	+		6733	14833	3480	3480							-0.0389910209877371
EGAPNREF	8	Unmodified	_EGAPNREF_					0	0	0			REV__ENSG00000109625|ENST00000360986|CPZ	REV__ENSG00000109625|ENST00000360986|CPZ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.2032775878906	2	460.217049	918.419545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.489	1	47.537	47.037	48.037	0.047523								0	0	0	0.35014	1	10786	10786		14.582	5.2343	1		+		6734	14646	3481	3481	9236	9236					-0.04292835693138386
EGARPFLL	8	Unmodified	_EGARPFLL_					0	0	0			REV__ENST00000527257.1_1_11:124967504-124971231:-|nuORF	REV__ENST00000527257.1_1_11:124967504-124971231:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.77056884765625	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.995	1	85.995	85.495	86.495	0								0	0	0	0.36486	1	22614	22614		7.9102	0	1		+		6735	16497	3482	3482	9237	9237					0.047461061056765175
EGARPFLL	8	Unmodified	_EGARPFLL_					0	0	0			REV__ENST00000527257.1_1_11:124967504-124971231:-|nuORF	REV__ENST00000527257.1_1_11:124967504-124971231:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7709045410156	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.155	1	85.142	84.642	85.642	-0.01284								0	0	0	0.35251	1	22342	22342		13.508	0	1		+		6736	16497	3482	3482	9238	9238					0.047461061056765175
EGARRPPEP	9	Unmodified	_EGARRPPEP_					0	0	0		ENST00000306675.3_1_5:159399273-159399312:+|nuORF	ENST00000306675.3_1_5:159399273-159399312:+|nuORF	ENST00000306675.3_1_5:159399273-159399312:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.28521728515625	2	504.764697	1007.51484	0.48029	0.00024243	1.1522	0.00058156	1.6324	0.000824	504.76451846437146	29.705	0.33701	29.705	29.551	29.888	0					13	11	2	0	0	0	0.25622	1	5369	5369		7.2892	0	1	39920			6737	9274	3483	3483	9239	9239					0.011385174978954637
EGARVRFV	8	Unmodified	_EGARVRFV_					0	0	0			REV__nc|ENSG00000062524|P29376-3|LTK	REV__nc|ENSG00000062524|P29376-3|LTK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.25518798828125	2	467.266876	932.519199	0.1352	6.3174E-05	-1.9171	-0.00089578	-1.7819	-0.0008326	467.26581866238627	37.068	0.51578	37.155	36.896	37.412	0.08741					28	18	2	0	0	0	0.34131	1	7551	7551		12.532	4.6214	1	129150	+		6738	13631	3484	3484	9240	9240					0.05024026711475926
EGASLKGHLP	10	Unmodified	_EGASLKGHLP_					0	0	0		AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant;AHNAK2|p.A5000Pfs*32|1|0.13|ENSG00000185567|chr14:104940454-104940454|A/-|frameshift_variant;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant	AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.3113098144531	2	504.777274	1007.53999	0.35353	0.00017846	-0.80617	-0.00040694	-0.45263	-0.00022848	504.77684286100236	29.703	0.47236	29.715	29.532	30.004	0.012266					27	15	2	0	0	0	0.31119	1	5332	5332		18.373	1.2602	1	89251			6739	23	3485	3485	9241	9241					0.03652572300461543
EGAYGWITI	9	Unmodified	_EGAYGWITI_					0	0	0		nc|ENSG00000138185|P49961-4|ENTPD1;nc|ENSG00000138185|P49961-5|ENTPD1;ENSG00000138185|ENST00000371205|ENTPD1;nc|ENSG00000138185|P49961-2|ENTPD1;nc|ENSG00000138185|P49961-6|ENTPD1;ENST00000490659.5_1_10:97583001-97604470:+|nuORF;ENST00000371206.6_1_10:97583001-97605437:+|nuORF;nc|ENSG00000138185|P49961-3|ENTPD1	nc|ENSG00000138185|P49961-4|ENTPD1	nc|ENSG00000138185|P49961-4|ENTPD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2637939453125	2	505.2531	1008.49165	0.38398	0.00019401	0.43628	0.00022043	0.82027	0.00041444	505.2533303318238	76.296	1.1096	76.265	75.881	76.991	-0.031487					115	40	4	0	0	0	0.17787	1	19755	19755		26.884	3.7352	1	2936300			6740	4129	3486	3486	9242	9242					-0.01225921339425895
EGCDSDHSSL	10	Unmodified	_EGCDSDHSSL_					0	0	0			REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2976684570312	2	525.195653	1048.37675	0.45418	0.00023853	-2.3325	-0.001225	-1.8783	-0.00098647	525.1942054984639	51.508	0.21962	51.555	51.375	51.595	0.046574					9	7	2	0	0	0	0.31926	1	11993	11993		1.1933	0.39971	1	174820	+		6741	16534	3487	3487	9243	9243					-0.14550018603540593
EGCTDSCC	8	Unmodified	_EGCTDSCC_					0	0	0		ENST00000515867.1_1_3:126668128-126668617:+|nuORF	ENST00000515867.1_1_3:126668128-126668617:+|nuORF	ENST00000515867.1_1_3:126668128-126668617:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.1106262207031	2	409.111689	816.208825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.348	1	15.239	14.739	15.739	-0.10981								0	0	0	0.37992	1	1002	1002		0.79363	0	1				6742	11433	3488	3488	9244	9244					-0.20663120393351164
EGDASDFHEQI	11	Unmodified	_EGDASDFHEQI_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.2631225585938	2	624.262382	1246.51021	0.3288	0.00020526	-0.0066646	-4.1604E-06	0.32214	0.0002011	624.2624313549826	57.718	0.46562	57.718	57.552	58.018	0					31	16	3	0	0	0	0.2454	1	13976	13976		40.239	29.44	1	573500			6743	3708	3489	3489	9245	9245					-0.10318456226173112
EGDASDFHEQI	11	Unmodified	_EGDASDFHEQI_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.51104736328125	3	416.51068	1246.51021	0.20434	8.5108E-05	0.2755	0.00011475	0.47983	0.00019986	416.51078391191356	57.933	0.47857	57.916	57.659	58.138	-0.0172					39	17	3	0	0	0	0.38765	1	14029	14029		12.856	1.3381	1	406670			6744	3708	3489	3489	9246	9246					-0.10318456226173112
EGDASDFHEQI	11	Unmodified	_EGDASDFHEQI_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	624.262382	1246.51021	0.076549	4.7787E-05	-0.039466	-2.4637E-05	0.037082	2.3149E-05	624.262490092926	57.496	0.49301	57.581	57.372	57.865	0.085621	-0.15981	-0.00017009	NaN	40.239	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	541270			6745	3708	3489	3489							-0.10318456226173112
EGDASDFHEQI	11	Unmodified	_EGDASDFHEQI_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	624.262382	1246.51021	0.21158	0.00013208	0.25663	0.00016021	0.46822	0.00029229	624.2624985511601	57.941	0.61603	57.924	57.659	58.275	-0.0172	0.18326	0.0001996	NaN	40.239	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438110			6746	3708	3489	3489							-0.10318456226173112
EGDQEYKSHK	10	Unmodified	_EGDQEYKSHK_					0	0	0			REV__ENST00000456813.1_1_1:39325817-39341821:+|nuORF	REV__ENST00000456813.1_1_1:39325817-39341821:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.232421875	3	407.52292	1219.54693	-0.41229	-0.00016802	-2.0549	-0.00083741	-2.4672	-0.0010054	407.85640876221976	13.09	0.22293	13.09	12.977	13.2	0					12	7	2	0	0	0	0.32068	1	336	336		3.5871	0	1	14823	+		6747	21175	3490	3490	9247	9247					-0.05406159609628958
EGDRYCLKDK	10	Unmodified	_EGDRYCLKDK_					0	0	0			REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5316162109375	3	409.53265	1225.57612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.293	1	29.307	28.807	29.807	0.013474								0	0	0	0.3593	1	5218	5218		10.899	0.58372	1		+		6748	22880	3491	3491	9248	9248					-0.02764338584984216
EGELRCRRL	9	Unmodified	_EGELRCRRL_					0	0	0		ENSG00000167799|ENST00000376693|NUDT8;ENST00000534054.1_1_11:67397109-67397382:-|nuORF;nc|ENSG00000167799|Q8WV74-2|NUDT8	ENSG00000167799|ENST00000376693|NUDT8	ENSG00000167799|ENST00000376693|NUDT8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7428588867188	2	566.306207	1130.59786	0.70385	0.0003986	2.9612	0.0016769	3.665	0.0020755	566.3081288224482	36.416	0.32142	36.502	36.333	36.654	0.08625					13	10	2	0	0	0	0.25526	1	7406	7406		7.9102	0	1	88196			6749	6213	3492	3492	9249	9249					0.03778510954248304
EGFEITRKEKL	11	Unmodified	_EGFEITRKEKL_					0	0	0			REV__ENST00000399196.1_1_6:30781990-30782203:-|nuORF	REV__ENST00000399196.1_1_6:30781990-30782203:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2528991699219	3	450.585632	1348.73507	0.34733	0.0001565	-1.2877	-0.0005802	-0.94033	-0.0004237	451.25315860870194	44.543	0.681	44.618	44.307	44.988	0.075047					51	24	3	0	0	0	0.43513	1	9837	9837		6.6235	2.2173	1	361120	+		6750	20687	3493	3493	9250	9250					0.0746469831478862
EGFEITRKEKL	11	Unmodified	_EGFEITRKEKL_					0	0	0			REV__ENST00000399196.1_1_6:30781990-30782203:-|nuORF	REV__ENST00000399196.1_1_6:30781990-30782203:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	450.585632	1348.73507	0.38345	0.00017278	-0.8586	-0.00038687	-0.47516	-0.0002141	450.5852379630739	44.965	0.52849	44.965	44.71	45.238	0	0.19237	-0.00014265	NaN	6.6235	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380150	+		6751	20687	3493	3493							0.0746469831478862
EGFEITRKEKL	11	Unmodified	_EGFEITRKEKL_					0	0	0			REV__ENST00000399196.1_1_6:30781990-30782203:-|nuORF	REV__ENST00000399196.1_1_6:30781990-30782203:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	450.585632	1348.73507	0.34039	0.00015338	-0.37231	-0.00016776	-0.031923	-1.4384E-05	450.58546072497467	44.667	0.54392	44.735	44.408	44.952	0.068569	-0.037363	0.00051469	NaN	6.6235	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	386290	+		6752	20687	3493	3493							0.0746469831478862
EGFEITRKEKL	11	Unmodified	_EGFEITRKEKL_					0	0	0			REV__ENST00000399196.1_1_6:30781990-30782203:-|nuORF	REV__ENST00000399196.1_1_6:30781990-30782203:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	450.585632	1348.73507	0.34733	0.0001565	-1.2877	-0.0005802	-0.94033	-0.0004237	451.25315860870194	44.543	0.681	44.618	44.307	44.988	0.075047	-0.15501	-0.00072263	NaN	6.6235	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361120	+		6753	20687	3493	3493							0.0746469831478862
EGFFSVFLS	9	Unmodified	_EGFFSVFLS_					0	0	0			REV__ENSG00000173930|ENST00000310954|SLCO4C1	REV__ENSG00000173930|ENST00000310954|SLCO4C1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7391967773438	2	516.755475	1031.4964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.603	1	82.603	82.103	83.103	0								0	0	0	0.20639	1	21573	21573		20.454	4.6064	1		+		6754	17812	3494	3494	9251	9251					-0.018090371966536622
EGFLDFGSSF	10	Unmodified	_EGFLDFGSSF_					0	0	0			REV__nc|ENSG00000155966|P51816-2|AFF2	REV__nc|ENSG00000155966|P51816-2|AFF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.2454833984375	2	553.245472	1104.47639	0.41171	0.00022778	2.203	0.0012188	2.6147	0.0014466	553.2464632431675	58.794	0.7867	58.78	58.583	59.37	-0.014267					41	27	2	0	0	0	0.28434	1	14374	14374		25.399	3.6527	1	306400	+		6755	16722	3495	3495	9252	9252					-0.07166832927259748
EGFLDFGSSF	10	Unmodified	_EGFLDFGSSF_					0	0	0			REV__nc|ENSG00000155966|P51816-2|AFF2	REV__nc|ENSG00000155966|P51816-2|AFF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.245472	1104.47639	0.3516	0.00019452	2.4302	0.0013445	2.7817	0.001539	553.2465972617957	58.828	0.72564	58.828	58.654	59.38	0	0.017237	0.00025401	NaN	25.399	39	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253820	+		6756	16722	3495	3495							-0.07166832927259748
EGFLDFGSSF	10	Unmodified	_EGFLDFGSSF_					0	0	0			REV__nc|ENSG00000155966|P51816-2|AFF2	REV__nc|ENSG00000155966|P51816-2|AFF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.245472	1104.47639	0.41869	0.00023164	1.9035	0.0010531	2.3222	0.0012847	553.2464336361162	58.732	0.67583	58.823	58.586	59.262	0.091301	0.013161	-0.00032873	NaN	25.399	33	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291030	+		6757	16722	3495	3495							-0.07166832927259748
EGFLEARL	8	Unmodified	_EGFLEARL_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7530822753906	2	467.753267	933.491981	-0.23803	-0.00011134	0.0097741	4.5719E-06	-0.22826	-0.00010677	467.75320981288814	59.724	0.50277	59.724	59.533	60.035	0					25	17	2	0	0	0	0.18275	1	14569	14569		46.021	2.1627	1	591490			6758	7707	3496	3496	9253	9253					0.022574983804247495
EGGDGCQF	8	Unmodified	_EGGDGCQF_					0	0	0			REV__ENST00000528828.1_1_8:38133161-38137268:-|nuORF	REV__ENST00000528828.1_1_8:38133161-38137268:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.72772216796875	2	406.64761	811.280668	0.11471	4.6646E-05	0.28868	0.00011739	0.40339	0.00016404	406.6478465131185	79.467	0.56926	79.438	79.182	79.751	-0.028931					25	22	2	0	0	0	0.34434	1	20539	20539		0	0	1	56874	+		6759	16392	3497	3497	9254	9254					-0.13252121652965343
EGGKEEVVM	9	Unmodified	_EGGKEEVVM_					0	0	0			REV__ENST00000355653.7_1_17:41167015-41167600:-|nuORF	REV__ENST00000355653.7_1_17:41167015-41167600:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.22467041015625	2	489.23405	976.453547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.12	1	69.101	68.601	69.601	-0.019157								0	0	0	0.22377	1	17438	17438		14.838	1.7958	1		+		6760	20194	3498	3498	9255	9255					-0.03562175316403682
EGGKREVVP	9	Unmodified	_EGGKREVVP_					0	0	0			REV__nc|ENSG00000187867|A6NDB9|PALM3	REV__nc|ENSG00000187867|A6NDB9|PALM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2907409667969	2	485.769448	969.524344	0.56267	0.00027333	-0.3127	-0.0001519	0.24997	0.00012143	485.7692162536845	20.636	0.39496	20.583	20.355	20.749	-0.05291					21	13	2	0	0	0	0.23783	1	2645	2645		7.9102	0	1	122370	+		6761	18530	3499	3499	9256	9256					0.03836285783427229
EGGLRNELQ	9	Unmodified	_EGGLRNELQ_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.23260498046875	2	508.261988	1014.50942	0.28855	0.00014666	3.175	0.0016137	3.4636	0.0017604	508.26270107578426	21.809	0.39336	21.809	21.573	21.966	0					20	14	2	0	0	0	0.23784	1	2974	2974		19.257	1.1106	1	44597	+		6762	15035	3500	3500	9257	9257					0.002747939154346568
EGHKRPPG	8	Unmodified	_EGHKRPPG_					0	0	0			REV__ENST00000379339.5_2_1:1017828-1018098:-|nuORF	REV__ENST00000379339.5_2_1:1017828-1018098:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.73760986328125	2	439.235576	876.456599	-0.26081	-0.00011456	-1.3191	-0.00057938	-1.5799	-0.00069393	439.234916785344	13.448	0.1749	13.448	13.309	13.484	0					7	5	2	0	0	0	0.34367	1	414	414		1.8442	0	1	26564	+		6763	20532	3501	3501	9258	9258					0.013428806432898455
EGIAEQLGL	9	Unmodified	_EGIAEQLGL_					0	0	0			REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1	REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7605285644531	2	465.250557	928.486562	0.24317	0.00011313	-1.8647	-0.00086755	-1.6215	-0.00075441	465.249585162727	74.901	0.36259	74.901	74.765	75.128	0					22	12	2	0	0	0	0.22188	1	19229	19229		20.454	1.1966	1	244220	+		6764	23222	3502	3502	9259	9259					0.01945774797957256
EGIAEQLGL	9	Unmodified	_EGIAEQLGL_					0	0	0			REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1	REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.76080322265625	2	465.250557	928.486562	0.5056	0.00023523	-1.693	-0.00078765	-1.1874	-0.00055242	465.2496886948904	74.979	0.42894	74.947	74.755	75.184	-0.031479					24	15	2	0	0	0	0.17787	1	19246	19246		26.884	5.137	1	223690	+		6765	23222	3502	3502	9260	9260					0.01945774797957256
EGIAIFALQ	9	Unmodified	_EGIAIFALQ_					0	0	0		STT3B|p.Y235Vfs*14|1|0.05|ENSG00000163527|chr3:31580087-31580088|-/GTCTCTTATGTGAACAGTTATGTTCAATG|frameshift_variant;ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENSG00000163527|ENST00000295770|STT3B	STT3B|p.Y235Vfs*14|1|0.05|ENSG00000163527|chr3:31580087-31580088|-/GTCTCTTATGTGAACAGTTATGTTCAATG|frameshift_variant	STT3B|p.Y235Vfs*14|1|0.05|ENSG00000163527|chr3:31580087-31580088|-/GTCTCTTATGTGAACAGTTATGTTCAATG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2834777832031	2	481.271293	960.528032	0.2588	0.00012455	-1.0746	-0.00051716	-0.81577	-0.00039261	481.27079308493467	91.292	0.11215	91.382	91.342	91.454	0.090668					12	8	2	0	0	0	0.25622	1	24245	24245		3.9444	0	1	104970			6766	5696	3503	3503	9261	9261					0.04618955557270965
EGILLGKI	8	Unmodified	_EGILLGKI_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7710876464844	2	421.770929	841.527304	0.1649	6.9551E-05	0.38912	0.00016412	0.55402	0.00023367	421.7709283534484	59.163	0.54007	59.148	58.947	59.488	-0.014271					30	18	2	0	0	0	0.23736	1	14408	14408		37.974	0	1	240910	+	+	6767	13261	3504	3504	9262	9262					0.10020160908231901
EGILLGKI	8	Unmodified	_EGILLGKI_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	421.770929	841.527304	-0.12695	-5.3544E-05	0.5712	0.00024092	0.44425	0.00018737	421.77102563653085	59.234	0.45552	59.234	59.024	59.479	0	0.050035	5.8491E-05	NaN	37.974	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247060	+	+	6768	13261	3504	3504							0.10020160908231901
EGILLGKI	8	Unmodified	_EGILLGKI_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	421.770929	841.527304	-0.0017346	-7.3158E-07	0.53588	0.00022602	0.53415	0.00022529	421.77099151752446	59.079	0.47721	59.17	58.983	59.46	0.091301	-0.014134	2.8696E-05	NaN	37.974	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287780	+	+	6769	13261	3504	3504							0.10020160908231901
EGILLGKI	8	Unmodified	_EGILLGKI_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	421.770929	841.527304	0.1649	6.9551E-05	0.38912	0.00016412	0.55402	0.00023367	421.7709283534484	59.163	0.54007	59.148	58.947	59.488	-0.014271	-0.035901	-9.5104E-05	NaN	37.974	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240910	+	+	6770	13261	3504	3504							0.10020160908231901
EGIPKLVA	8	Unmodified	_EGIPKLVA_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.23968505859375	2	413.755278	825.496004	0.23586	9.7588E-05	-0.62561	-0.00025885	-0.38975	-0.00016126	413.75512402526664	59.339	0.16994	59.43	59.29	59.46	0.091305					7	5	2	0	0	0	0.34294	1	14406	14406		7.2892	0	1	88458			6771	7887	3505	3505	9263	9263					0.07627587874128494
EGIWKLKP	8	Unmodified	_EGIWKLKP_					0	0	0		ENSG00000225830|ENST00000355832|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7999267578125	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.066	1	80.127	79.627	80.627	0.061417								0	0	0	0.3229	1	20780	20780		25.399	2.663	1				6772	8449	3506	3506	9264	9264					0.07875252173835179
EGIYRAGNKF	10	Unmodified	_EGIYRAGNKF_					0	0	0			REV__ENST00000493019.1_1_21:43906458-43916296:-|nuORF	REV__ENST00000493019.1_1_21:43906458-43916296:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.7900390625	2	577.80128	1153.58801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.137	1	68.118	67.618	68.618	-0.019157								0	0	0	0.34209	1	17137	17137		18.146	0.011366	1		+		6773	16884	3507	3507	9265	9265					0.0173564622050435
EGKENILLN	9	Unmodified	_EGKENILLN_					0	0	0			REV__ENSG00000059758|ENST00000261211|CDK17	REV__ENSG00000059758|ENST00000261211|CDK17	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.273681640625	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.189	1	58.172	57.672	58.672	-0.0172								0	0	0	0.20977	1	14088	14088		19.362	1.9193	1		+		6774	13617	3508	3508	9266	9266					0.037091352350671514
EGKQLVSET	9	Unmodified	_EGKQLVSET_					0	0	0			REV__ENSG00000011523|ENST00000377990|CEP68	REV__ENSG00000011523|ENST00000377990|CEP68	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.77691650390625	2	495.758746	989.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.634	1	38.732	38.232	39.232	0.097527								0	0	0	0.19534	1	8066	8066		24.021	2.2739	1		+		6775	13435	3509	3509	9267	9267					0.007768559640339845
EGKTKEVI	8	Unmodified	_EGKTKEVI_					0	0	0		nc|ENSG00000125746|O95834-3|EML2;nc|ENSG00000125746|O95834-2|EML2	nc|ENSG00000125746|O95834-3|EML2	nc|ENSG00000125746|O95834-3|EML2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.27789306640625	2	452.260925	902.507297	0.1094	4.9479E-05	-3.4464	-0.0015587	-3.337	-0.0015092	452.25974116699194	69.673	0.34962	69.651	69.564	69.913	-0.022087					19	12	2	0	0	0	0.34218	1	17612	17612		9.3474	1.4373	1	84983			6776	12687	3510	3510	9268	9268					0.052143651776077604
EGLGPSPHL	9	Unmodified	_EGLGPSPHL_					0	0	0		nc|ENSG00000146216|Q5TCY1-2|TTBK1;ENSG00000146216|ENST00000259750|TTBK1	nc|ENSG00000146216|Q5TCY1-2|TTBK1	nc|ENSG00000146216|Q5TCY1-2|TTBK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2840270996094	2	453.737617	905.460681	0.25316	0.00011487	4.1812	0.0018972	4.4344	0.002012	453.7384663020343	89.311	0.49137	89.311	89.153	89.645	0					39	26	2	0	0	0	0.2322	1	23616	23616		14.838	4.0143	1	129440			6777	4699	3511	3511	9269	9269					0.004169253463260247
EGLGPSPHL	9	Unmodified	_EGLGPSPHL_					0	0	0		nc|ENSG00000146216|Q5TCY1-2|TTBK1;ENSG00000146216|ENST00000259750|TTBK1	nc|ENSG00000146216|Q5TCY1-2|TTBK1	nc|ENSG00000146216|Q5TCY1-2|TTBK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2839660644531	2	453.737617	905.460681	0.26552	0.00012048	3.7348	0.0016946	4.0003	0.0018151	453.73860688321975	89.44	0.35957	89.439	89.223	89.583	-0.00080872					30	19	2	0	0	0	0.2322	1	23628	23628		10.074	5.3179	1	120230			6778	4699	3511	3511	9270	9270					0.004169253463260247
EGLHGPGCTL	10	Unmodified	_EGLHGPGCTL_					0	0	0		nc|ENSG00000157890|A6BM72-3|MEGF11;nc|ENSG00000157890|A6BM72-2|MEGF11;nc|ENSG00000157890|A6BM72|MEGF11;ENSG00000157890|ENST00000395614|MEGF11	nc|ENSG00000157890|A6BM72-3|MEGF11	nc|ENSG00000157890|A6BM72-3|MEGF11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.23486328125	2	492.234384	982.454216	0.17741	8.7328E-05	2.2438	0.0011045	2.4212	0.0011918	492.2351963621859	69.461	1.0083	69.461	69.123	70.131	0					67	36	4	0	0	0	0.26638	1	17524	17524		30.637	3.7529	1	2097800			6779	12779	3512	3512	9271	9271					-0.037713358767064165
EGLISDEDF	9	Unmodified	_EGLISDEDF_					0	0	0			REV__ENSG00000099822|ENST00000251287|HCN2	REV__ENSG00000099822|ENST00000251287|HCN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.294921875	2	512.727112	1023.43967	0.25129	0.00012884	2.8527	0.0014627	3.104	0.0015915	513.2313754059481	71.114	0.18069	71.174	71.092	71.273	0.060783					6	5	2	0	0	0	0.25526	1	18069	18069		7.9102	0.62092	1	139490	+		6780	14138	3513	3513	9272	9272					-0.07111129543852712
EGLKMLRP	8	Unmodified	_EGLKMLRP_					0	0	0			REV__nc|ENSG00000077800|O75344-2|FKBP6	REV__nc|ENSG00000077800|O75344-2|FKBP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7018737792969	2	472.273312	942.532072	0.17025	8.0405E-05	0.16377	7.7343E-05	0.33402	0.00015775	472.27365589603494	50.146	0.77623	50.146	49.819	50.595	0					35	28	2	0	0	0	0.3366	1	11724	11724		18.135	4.6271	1	231170	+		6781	13846	3514	3514	9273	9273					0.05850721779347623
EGLKMLRP	8	Unmodified	_EGLKMLRP_					0	0	0			REV__nc|ENSG00000077800|O75344-2|FKBP6	REV__nc|ENSG00000077800|O75344-2|FKBP6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	472.273312	942.532072	0.54118	0.00025558	0.24316	0.00011484	0.78434	0.00037042	472.27371299267253	50.033	0.58231	50.078	49.85	50.433	0.044891	-0.03416	3.6196E-05	NaN	18.135	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190680	+		6782	13846	3514	3514							0.05850721779347623
EGLKRANPI	9	Unmodified	_EGLKRANPI_					0	0	0			REV__ENST00000553956.6_1_17:62510355-62528036:+|nuORF	REV__ENST00000553956.6_1_17:62510355-62528036:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.29315185546875	2	499.293091	996.571629	0.31093	0.00015525	-0.09558	-4.7723E-05	0.21535	0.00010752	499.2930032584889	17.684	0.45273	17.684	17.507	17.96	0					27	14	3	0	0	0	0.31038	1	1716	1716		7.2892	0.56607	1	82388	+		6783	19272	3515	3515	9274	9274					0.07320565054419603
EGLLQFTIL	9	Unmodified	_EGLLQFTIL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.28369140625	2	517.30005	1032.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.083	1	81.149	80.649	81.649	0.065094								0	0	0	0.21009	1	21095	21095		19.257	1.1106	1				6784	1207	3516	3516	9275	9275					0.07055797762859584
EGLLQFTIL	9	Unmodified	_EGLLQFTIL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.2836303710938	2	517.30005	1032.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.222	1	81.291	80.791	81.791	0.068993								0	0	0	0.21009	1	21138	21138		19.257	3.4098	1				6785	1207	3516	3516	9276	9276					0.07055797762859584
EGLLQFTIL	9	Unmodified	_EGLLQFTIL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2835083007812	2	517.30005	1032.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.036	1	80.007	79.507	80.507	-0.028931								0	0	0	0.12743	1	20767	20767		39.957	5.8549	1				6786	1207	3516	3516	9277	9277					0.07055797762859584
EGLLQFTIL	9	Unmodified	_EGLLQFTIL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2833251953125	2	517.30005	1032.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.25	1	81.226	80.726	81.726	-0.02404								0	0	0	0.21009	1	21139	21139		19.257	3.4098	1				6787	1207	3516	3516	9278	9278					0.07055797762859584
EGLLSTVQAK	10	Unmodified	_EGLLSTVQAK_					0	0	0			REV__nc|ENSG00000269335|Q9Y6K9-3|IKBKG	REV__nc|ENSG00000269335|Q9Y6K9-3|IKBKG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7135620117188	2	523.298039	1044.58152	0.4105	0.00021481	-0.15947	-8.3449E-05	0.25103	0.00013136	523.2977025745656	31.431	0.35716	31.472	31.178	31.535	0.040991					19	12	2	0	0	0	0.31358	1	5804	5804		13.906	1.6654	1	138720	+		6788	19309	3517	3517	9279	9279					0.061017082691250835
EGLNKTETV	9	Unmodified	_EGLNKTETV_					0	0	0			REV__CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant	REV__CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2926940917969	2	495.758746	989.50294	0.32459	0.00016092	-0.19505	-9.6695E-05	0.12954	6.4221E-05	495.7587517511763	26.111	0.46442	26.089	25.945	26.409	-0.022238					41	16	4	0	0	0	0.12329	1	4267	4267		41.956	7.0235	1	238800	+		6789	13137	3518	3518	9280	9280					0.007768559640453532
EGLRLNLL	8	Unmodified	_EGLRLNLL_					0	0	0		ENST00000526748.1_1_14:75536435-75544319:+|nuORF	ENST00000526748.1_1_14:75536435-75544319:+|nuORF	ENST00000526748.1_1_14:75536435-75544319:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.28509521484375	2	464.284734	926.554916	-0.046993	-2.1818E-05	0.64823	0.00030097	0.60124	0.00027915	464.2850248081517	67.199	0.76633	67.199	66.881	67.647	0					40	26	2	0	0	0	0.029748	1	16862	16862		88.904	0	1	510360			6790	11563	3519	3519	9281	9281					0.08870064168456793
EGLRLNLL	8	Unmodified	_EGLRLNLL_					0	0	0		ENST00000526748.1_1_14:75536435-75544319:+|nuORF	ENST00000526748.1_1_14:75536435-75544319:+|nuORF	ENST00000526748.1_1_14:75536435-75544319:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.28485107421875	2	464.284734	926.554916	-0.030597	-1.4206E-05	0.601	0.00027904	0.5704	0.00026483	464.2849567926809	67.08	0.83864	67.158	66.789	67.628	0.078041					41	29	2	0	0	0	0.029748	2	16805	16805;16850		88.904	0	1	540220			6791	11563	3519	3519	9282;9283	9282					0.08870064168456793
EGLRLNLL	8	Unmodified	_EGLRLNLL_					0	0	0		ENST00000526748.1_1_14:75536435-75544319:+|nuORF	ENST00000526748.1_1_14:75536435-75544319:+|nuORF	ENST00000526748.1_1_14:75536435-75544319:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.28472900390625	2	464.284734	926.554916	0.0217	1.0075E-05	0.58543	0.00027181	0.60713	0.00028188	464.2849989560137	67.167	0.69998	67.151	66.893	67.593	-0.016296					35	23	2	0	0	0	0.021231	2	16842	16842;16892		100.37	0	1	450910			6792	11563	3519	3519	9284;9285	9284					0.08870064168456793
EGLRVLVV	8	Unmodified	_EGLRVLVV_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7814025878906	2	442.781828	883.549102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.998	1	60.998	60.498	61.498	0								0	0	0	0.3229	1	14955	14955		25.399	3.6527	1				6793	694	3520	3520	9286	9286					0.10266965656808225
EGLRVLVV	8	Unmodified	_EGLRVLVV_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.7816162109375	2	442.781828	883.549102	0.33741	0.0001494	-0.39707	-0.00017581	-0.059661	-2.6417E-05	442.7815523551915	60.859	0.34151	60.956	60.698	61.039	0.096985					20	11	2	0	0	0	0.28696	1	14915	14915		32.305	10.559	1	467070			6794	694	3520	3520	9287	9287					0.10266965656808225
EGLSVRRASS	10	Unmodified	_EGLSVRRASS_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.287353515625	2	531.288537	1060.56252	0.58579	0.00031122	-1.6911	-0.00089845	-1.1053	-0.00058723	531.2872282926593	79.474	0.97782	79.474	79.119	80.097	0					101	37	4	0	0	0	0.35231	1	20574	20574		12.241	1.4167	1	3150600			6795	12900	3521	3521	9288	9288					0.03466171698096332
EGLTDTDVVL	10	Unmodified	_EGLTDTDVVL_					0	0	0			REV__nc|ENSG00000137337|Q14676-2|MDC1	REV__nc|ENSG00000137337|Q14676-2|MDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.272216796875	2	531.271687	1060.52882	0.48291	0.00025656	0.50519	0.00026839	0.9881	0.00052495	531.2719211996524	67.453	0.70657	67.453	67.135	67.842	0					61	24	3	0	0	0	0.31267	1	16957	16957		14.838	4.0143	1	512620	+		6796	15855	3522	3522	9289	9289					0.0009770541569196212
EGLVSVHFNL	10	Unmodified	_EGLVSVHFNL_					0	0	0			REV__nc|ENSG00000121964|Q4AE62-6|GTDC1	REV__nc|ENSG00000121964|Q4AE62-6|GTDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2450561523438	2	557.798206	1113.58186	0.25865	0.00014428	-1.1449	-0.00063861	-0.88623	-0.00049434	557.7974942607364	80.909	0.35045	80.882	80.759	81.109	-0.026825					22	14	2	0	0	0	0.31889	1	21061	21061		6.2058	0.97511	1	146520	+		6797	15139	3523	3523	9290	9290					0.029611279890104925
EGNELTKTLIK	11	Unmodified	_EGNELTKTLIK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.3560180664062	2	623.356085	1244.69762	-0.12264	-7.6449E-05	-0.47305	-0.00029488	-0.5957	-0.00037133	623.355670828438	46.157	0.48785	46.216	46.015	46.503	0.059837					49	17	4	0	0	0	0.13465	2	10353	10353;10403		37.075	0.56844	1	1492400			6798	8602	3524	3524	9291;9292	9291					0.08505607049187347
EGNELTKTLIK	11	Unmodified	_EGNELTKTLIK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.3560791015625	2	623.356085	1244.69762	0.14484	9.0289E-05	-0.75199	-0.00046875	-0.60714	-0.00037847	623.3556498409793	46.213	0.57016	46.278	46.043	46.613	0.065048					48	20	4	0	0	0	0.082028	2	10352	10352;10399		43.982	5.8063	1	1585300			6799	8602	3524	3524	9293;9294	9293					0.08505607049187347
EGNILPLV	8	Unmodified	_EGNILPLV_					0	0	0		nc|ENSG00000125149|Q9BSU1-2|PHAF1;ENST00000569626.1_1_16:67154016-67168169:+|nuORF	nc|ENSG00000125149|Q9BSU1-2|PHAF1	nc|ENSG00000125149|Q9BSU1-2|PHAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.7525939941406	2	427.752736	853.490919	-0.0726	-3.1055E-05	0.16868	7.2152E-05	0.096077	4.1097E-05	427.7526786012381	81.814	0.66228	81.814	81.504	82.166	0					70	25	4	0	0	0	0.042854	3	21336	21296;21336;21386		81.613	0	1	1125200			6800	12011	3525	3525	9295;9296;9297	9296					0.05831284011514981
EGNILPLV	8	Unmodified	_EGNILPLV_					0	0	0		nc|ENSG00000125149|Q9BSU1-2|PHAF1;ENST00000569626.1_1_16:67154016-67168169:+|nuORF	nc|ENSG00000125149|Q9BSU1-2|PHAF1	nc|ENSG00000125149|Q9BSU1-2|PHAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.752685546875	2	427.752736	853.490919	-0.29366	-0.00012562	0.47568	0.00020347	0.18201	7.7856E-05	427.7527454679885	81.7	0.67146	81.769	81.482	82.154	0.068993					80	29	5	0	0	0	0.095164	3	21298	21256;21298;21353		61.357	0	1	954690			6801	12011	3525	3525	9298;9299;9300	9299					0.05831284011514981
EGNILPLV	8	Unmodified	_EGNILPLV_					0	0	0		nc|ENSG00000125149|Q9BSU1-2|PHAF1;ENST00000569626.1_1_16:67154016-67168169:+|nuORF	nc|ENSG00000125149|Q9BSU1-2|PHAF1	nc|ENSG00000125149|Q9BSU1-2|PHAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.7527160644531	2	427.752736	853.490919	-0.015176	-6.4915E-06	-0.059275	-2.5355E-05	-0.074451	-3.1847E-05	427.7526464594389	81.864	0.68029	81.84	81.457	82.137	-0.02404					66	28	3	0	0	0	0.095164	3	21288	21288;21335;21385		61.357	0	1	1055700			6802	12011	3525	3525	9301;9302;9303	9301					0.05831284011514981
EGNRCSVHG	9	Unmodified	_EGNRCSVHG_					0	0	0		ENST00000575151.1_3_17:263987-273272:+|nuORF	ENST00000575151.1_3_17:263987-273272:+|nuORF	ENST00000575151.1_3_17:263987-273272:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.27740478515625	2	479.711608	957.408662	0.055698	2.6719E-05	0.54223	0.00026011	0.59792	0.00028683	479.71189807399224	23.139	0.30519	23.051	22.937	23.242	-0.087608					19	10	2	0	0	0	0.25879	1	3415	3415		4.756	2.1785	1	50007			6803	12045	3526	3526	9304	9304					-0.07174561339070351
EGNRCSVHG	9	Unmodified	_EGNRCSVHG_					0	0	0		ENST00000575151.1_3_17:263987-273272:+|nuORF	ENST00000575151.1_3_17:263987-273272:+|nuORF	ENST00000575151.1_3_17:263987-273272:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.711608	957.408662	0.20575	9.8699E-05	0.27871	0.0001337	0.48445	0.0002324	479.7117294092131	23.195	0.3546	23.15	22.951	23.305	-0.044867	0.049452	-0.00014556	NaN	4.756	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61289			6804	12045	3526	3526							-0.07174561339070351
EGNRRRRRPRT	11	Unmodified	_EGNRRRRRPRT_					0	0	0			REV__ENST00000269187.9_2_18:33706902-33709119:-|nuORF	REV__ENST00000269187.9_2_18:33706902-33709119:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8004455566406	3	485.282162	1452.82466	0.082323	3.995E-05	-0.47155	-0.00022884	-0.38923	-0.00018889	485.2817482775909	52.037	0.56387	52.036	51.71	52.274	-0.00080872					38	20	3	0	0	0	0.3331	1	12233	12233		2.2527	1.7468	1	322930	+		6805	19670	3527	3527	9305	9305					0.11635810557390869
EGNRYWSLEQ	10	Unmodified	_EGNRYWSLEQ_					0	0	0			REV__nc|ENSG00000171587|O60469-2|DSCAM	REV__nc|ENSG00000171587|O60469-2|DSCAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.91375732421875	3	427.866798	1280.57856	-0.034804	-1.4891E-05	-1.8064	-0.0007729	-1.8412	-0.00078779	427.8658659011992	23.465	0.89936	23.425	23.038	23.937	-0.040556					49	31	2	0	0	0	0.3213	1	3598	3598		1.9064	0	1	63577	+		6806	17654	3528	3528	9306	9306					-0.050501668556762525
EGNRYWSLEQ	10	Unmodified	_EGNRYWSLEQ_					0	0	0			REV__nc|ENSG00000171587|O60469-2|DSCAM	REV__nc|ENSG00000171587|O60469-2|DSCAM	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	427.866798	1280.57856	-0.26991	-0.00011548	-1.9846	-0.00084915	-2.2545	-0.00096463	427.86589246441366	23.336	0.6223	23.336	23.021	23.643	0	-0.044088	-0.00010712	NaN	1.9064	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50669	+		6807	17654	3528	3528							-0.050501668556762525
EGNYLDDALVR	11	Unmodified	_EGNYLDDALVR_					0	0	0		ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.209716796875	3	422.210453	1263.60953	-0.38532	-0.00016269	-1.1234	-0.00047433	-1.5088	-0.00063701	422.2099537680272	12.986	0.45442	12.918	12.791	13.245	-0.067495					31	15	4	0	0	0	0.47633	1	305	305		1.2148	0.588	1	82369			6808	7921	3529	3529	9307	9307					-0.011730135414609322
EGPCSFRS	8	Unmodified	_EGPCSFRS_					0	0	0		ENST00000260599.10_3_2:27309825-27310158:+|nuORF	ENST00000260599.10_3_2:27309825-27310158:+|nuORF	ENST00000260599.10_3_2:27309825-27310158:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.6925964355469	2	441.692352	881.370152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.529	1	72.529	72.029	73.029	0								0	0	0	0.35663	1	18493	18493		11.64	0	1				6809	8958	3530	3530	9308	9308					-0.07527866973589425
EGPCSFRS	8	Unmodified	_EGPCSFRS_					0	0	0		ENST00000260599.10_3_2:27309825-27310158:+|nuORF	ENST00000260599.10_3_2:27309825-27310158:+|nuORF	ENST00000260599.10_3_2:27309825-27310158:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.692626953125	2	441.692352	881.370152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.316	1	72.373	71.873	72.873	0.056572								0	0	0	0.33432	1	18420	18420		21.747	1.293	1				6810	8958	3530	3530	9309	9309					-0.07527866973589425
EGPEITMTV	9	Unmodified	_EGPEITMTV_					0	0	0		ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	ENSG00000153531|ENST00000612156|ADPRHL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2694091796875	2	488.736425	975.458298	0.40306	0.00019699	1.9843	0.00096981	2.3874	0.0011668	488.73686742177443	36.131	0.13489	36.131	36.065	36.2	0					6	4	2	0	0	0	0.24913	1	7298	7298		7.9102	0	1	87250			6811	5078	3531	3531	9310	9310					-0.030412911736334536
EGPFAAEQF	9	Unmodified	_EGPFAAEQF_					0	0	0			REV__ENST00000476834.6_1_10:135192804-135197470:+|nuORF	REV__ENST00000476834.6_1_10:135192804-135197470:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3343811035156	2	498.227082	994.439611	0.38265	0.00019064	0.67994	0.00033876	1.0626	0.00052941	498.2271686411024	68.267	0.62017	68.267	68.022	68.643	0					49	23	3	0	0	0	0.22061	1	17214	17214		24.021	5.8856	1	618800	+		6812	16438	3532	3532	9311	9311					-0.05783084753181811
EGPKLQVF	8	Unmodified	_EGPKLQVF_					0	0	0			REV__ENSG00000133997|ENST00000256379|MED6	REV__ENSG00000133997|ENST00000256379|MED6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.6664733886719	2	459.258185	916.501818	0.34582	0.00015882	0.6494	0.00029824	0.99522	0.00045706	459.25839596079373	66.006	0.11374	66.09	66.02	66.134	0.083832					5	3	2	0	0	0	0.34319	1	16479	16479		2.5775	0	1	54343	+		6813	15647	3533	3533	9312	9312					0.04022686385815177
EGPLDVHT	8	Unmodified	_EGPLDVHT_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7803649902344	2	434.213975	866.413397	0.47501	0.00020626	0.17583	7.6347E-05	0.65084	0.0002826	434.2140083393881	33.918	0.53068	33.985	33.786	34.317	0.06636					31	18	2	0	0	0	0.34167	1	6665	6665		3.9444	2.1002	1	167890			6814	7161	3534	3534	9313	9313					-0.025153539246616674
EGPLTPPL	8	Unmodified	_EGPLTPPL_					0	0	0		ENSG00000123307|ENST00000242994|NEUROD4	ENSG00000123307|ENST00000242994|NEUROD4	ENSG00000123307|ENST00000242994|NEUROD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.7462463378906	2	412.231636	822.448719	0.27133	0.00011185	-1.7728	-0.00073081	-1.5015	-0.00061896	412.2308768754005	77.575	0.67434	77.575	77.228	77.902	0					35	24	2	0	0	0	0.42758	1	19983	19983		13.508	0	1	183820			6815	3095	3535	3535	9314	9314					0.030393086031381245
EGPLTPPL	8	Unmodified	_EGPLTPPL_					0	0	0		ENSG00000123307|ENST00000242994|NEUROD4	ENSG00000123307|ENST00000242994|NEUROD4	ENSG00000123307|ENST00000242994|NEUROD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.7462158203125	2	412.231636	822.448719	0.53239	0.00021947	-2.0924	-0.00086255	-1.56	-0.00064308	412.23077170742243	77.507	0.58131	77.563	77.314	77.895	0.05542					34	20	2	0	0	0	0.42758	1	19965	19965		13.508	0	1	163550			6816	3095	3535	3535	9315	9315					0.030393086031381245
EGPLTPPL	8	Unmodified	_EGPLTPPL_					0	0	0		ENSG00000123307|ENST00000242994|NEUROD4	ENSG00000123307|ENST00000242994|NEUROD4	ENSG00000123307|ENST00000242994|NEUROD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.7461853027344	2	412.231636	822.448719	0.60967	0.00025132	-1.9569	-0.0008067	-1.3472	-0.00055537	412.2309188575333	77.527	0.84743	77.495	77.213	78.061	-0.031334					41	30	2	0	0	0	0.42758	1	19996	19996		13.508	0	1	197960			6817	3095	3535	3535	9316	9316					0.030393086031381245
EGPPAQHA	8	Unmodified	_EGPPAQHA_					0	0	0		ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000168056|Q9NS15-2|LTBP3	ENSG00000168056|ENST00000301873|LTBP3	ENSG00000168056|ENST00000301873|LTBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.1724853515625	2	403.69321	805.371866	-0.47663	-0.00019241	1.5087	0.00060903	1.032	0.00041662	403.69335500637294	18.676	0.55629	18.618	18.458	19.014	-0.058172					30	19	2	0	0	0	0.34337	1	1970	1970		5.2307	0	1	62883			6818	6241	3536	3536	9317	9317					-0.03860489893338581
EGPPWQAC	8	Unmodified	_EGPPWQAC_					0	0	0		ENST00000454715.5_1_3:196051210-196054342:-|nuORF	ENST00000454715.5_1_3:196051210-196054342:-|nuORF	ENST00000454715.5_1_3:196051210-196054342:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.76580810546875	2	444.189445	886.364338	0.344	0.0001528	0.22458	9.9756E-05	0.56858	0.00025256	444.1894660312351	66.105	0.57454	66.092	65.859	66.433	-0.013588					31	20	2	0	0	0	0.34131	1	16486	16486		12.532	0	1	296440			6819	10682	3537	3537	9318	9318					-0.0833896548526809
EGPPWQAC	8	Unmodified	_EGPPWQAC_					0	0	0		ENST00000454715.5_1_3:196051210-196054342:-|nuORF	ENST00000454715.5_1_3:196051210-196054342:-|nuORF	ENST00000454715.5_1_3:196051210-196054342:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	444.189445	886.364338	0.46832	0.00020802	-0.58767	-0.00026104	-0.11935	-5.3014E-05	444.1889223394828	66.146	0.9574	66.146	65.899	66.856	0	0.031179	-0.00067024	NaN	12.532	46	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294770			6820	10682	3537	3537							-0.0833896548526809
EGPPWQAC	8	Unmodified	_EGPPWQAC_					0	0	0		ENST00000454715.5_1_3:196051210-196054342:-|nuORF	ENST00000454715.5_1_3:196051210-196054342:-|nuORF	ENST00000454715.5_1_3:196051210-196054342:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	444.189445	886.364338	0.38572	0.00017133	0.18766	8.3355E-05	0.57337	0.00025469	444.1893126323261	66.023	0.63326	66.107	65.86	66.494	0.083824	-0.0079805	1.854E-05	NaN	12.532	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204390			6821	10682	3537	3537							-0.0833896548526809
EGPRGNGLGLH	11	Unmodified	_EGPRGNGLGLH_					0	0	0			REV__ENST00000556328.1_1_14:89018597-89018732:+|nuORF	REV__ENST00000556328.1_1_14:89018597-89018732:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3204956054688	2	553.788704	1105.56285	0.0046937	2.5993E-06	0.36834	0.00020398	0.37304	0.00020658	553.7892457102384	13.428	0.3667	13.428	13.2	13.567	0					21	12	3	0	0	0	0.33255	1	421	421		2.9952	0.69251	1	63520	+		6822	22256	3538	3538	9319	9319					0.014295914179456304
EGQPVRQFFD	10	Unmodified	_EGQPVRQFFD_					0	0	0			REV__ENST00000419271.1_1_7:63353684-63354623:+|nuORF	REV__ENST00000419271.1_1_7:63353684-63354623:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.7573852539062	2	611.796195	1221.57784	0.41394	0.00025325	1.6622	0.0010169	2.0762	0.0012702	611.7972241686423	56.986	0.46959	56.967	56.838	57.308	-0.019077					21	16	2	0	0	0	0.31358	1	13716	13716		13.906	4.5229	1	259670	+		6823	20842	3539	3539	9320	9320					-0.024089615047159896
EGQPVRQFFD	10	Unmodified	_EGQPVRQFFD_					0	0	0			REV__ENST00000419271.1_1_7:63353684-63354623:+|nuORF	REV__ENST00000419271.1_1_7:63353684-63354623:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	611.796195	1221.57784	0.42482	0.0002599	2.2201	0.0013582	2.6449	0.0016181	611.7976966525306	56.984	0.6629	56.984	56.713	57.376	0	0.041814	-6.1328E-05	NaN	13.906	31	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204820	+		6824	20842	3539	3539							-0.024089615047159896
EGQPVRQFFD	10	Unmodified	_EGQPVRQFFD_					0	0	0			REV__ENST00000419271.1_1_7:63353684-63354623:+|nuORF	REV__ENST00000419271.1_1_7:63353684-63354623:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	611.796195	1221.57784	0.42039	0.0002572	2.8694	0.0017555	3.2898	0.0020127	612.299209432302	56.797	0.15215	56.876	56.756	56.909	0.078674	-0.066784	0.00073314	NaN	13.906	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251820	+		6825	20842	3539	3539							-0.024089615047159896
EGRELFVDRKT	11	Unmodified	_EGRELFVDRKT_					0	0	0			REV__ENSG00000181222|ENST00000674977|POLR2A	REV__ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.5765075683594	3	450.577247	1348.70991	0.15196	6.8471E-05	-1.0802	-0.0004867	-0.92821	-0.00041823	450.5767456342743	21.883	0.53232	21.883	21.627	22.16	0					26	19	2	0	0	0	0.47545	1	3019	3019		1.3296	0.21989	1	90397	+		6826	18138	3540	3540	9321	9321					0.049506435122111725
EGRHQELY	8	Unmodified	_EGRHQELY_					0	0	0			REV__ENSG00000268104|ENST00000598581|SLC6A14	REV__ENSG00000268104|ENST00000598581|SLC6A14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7688598632812	2	516.24888	1030.48321	0.24873	0.00012841	0.8984	0.0004638	1.1471	0.0005922	516.2494579451344	24.117	0.56887	24.117	23.917	24.486	0					32	19	2	0	0	0	0.34353	1	3656	3656		4.756	0	1	93346	+		6827	19305	3541	3541	9322	9322					-0.030814752560445413
EGRKLPSF	8	Unmodified	_EGRKLPSF_					0	0	0			REV__ENST00000439332.1_1:144301014-144301113:-|nuORF	REV__ENST00000439332.1_1:144301014-144301113:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7762756347656	2	467.261259	932.507966	0.19502	9.1126E-05	2.0688	0.00096668	2.2638	0.0010578	467.26161110385465	75.998	0.46672	75.966	75.749	76.216	-0.031479					20	16	2	0	0	0	0.34131	1	19490	19490		7.9102	2.1497	1	138930	+		6828	21035	3542	3542	9323	9323					0.039012046173297676
EGRRVRIS	8	Unmodified	_EGRRVRIS_					0	0	0		ENST00000550165.5_1_12:49960554-49961530:-|nuORF	ENST00000550165.5_1_12:49960554-49961530:-|nuORF	ENST00000550165.5_1_12:49960554-49961530:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.9317626953125	2	486.788507	971.562461	0.012613	6.1399E-06	2.5101	0.0012219	2.5227	0.001228	486.7897757972933	30.038	0.43808	30.065	29.812	30.25	0.027157					21	14	2	0	0	0	0.34131	1	5428	5428		12.532	1.7076	1	76300			6829	11793	3543	3543	9324	9324					0.07554216488756538
EGRVGRPGL	9	Unmodified	_EGRVGRPGL_					0	0	0			REV__ENST00000264990.10_1_3:132379039-132379408:-|nuORF	REV__ENST00000264990.10_1_3:132379039-132379408:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.8004150390625	2	470.769783	939.525013	-0.015094	-7.1059E-06	0.12125	5.7081E-05	0.10616	4.9975E-05	470.76987196543826	17.936	0.76191	17.936	17.537	18.299	0					41	25	2	0	0	0	0.25431	1	1776	1776		9.3831	1.473	1	77633	+		6830	19644	3544	3544	9325	9325					0.052831252231385406
EGRVGRPGL	9	Unmodified	_EGRVGRPGL_					0	0	0			REV__ENST00000264990.10_1_3:132379039-132379408:-|nuORF	REV__ENST00000264990.10_1_3:132379039-132379408:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.8003845214844	2	470.769783	939.525013	0.016874	7.9439E-06	0.044074	2.0749E-05	0.060949	2.8693E-05	470.7698189657659	18.056	0.72075	17.998	17.62	18.341	-0.058174					42	25	2	0	0	0	0.25431	1	1822	1822		9.3831	1.473	1	91898	+		6831	19644	3544	3544	9326	9326					0.052831252231385406
EGSCWEFFSR	10	Unmodified	_EGSCWEFFSR_					0	0	0		ENST00000367033.3_1_1:208417261-208417633:-|nuORF	ENST00000367033.3_1_1:208417261-208417633:-|nuORF	ENST00000367033.3_1_1:208417261-208417633:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.5109558105469	3	416.509846	1246.50771	0.24722	0.00010297	1.4173	0.00059033	1.6645	0.0006933	416.510589366236	57.483	0.42818	57.568	57.437	57.865	0.085621					33	15	3	0	0	0	0.36786	1	13926	13926		5.4027	0	1	513180			6832	9720	3545	3545	9327	9327					-0.10568583164854317
EGSLDLGHAP	10	Unmodified	_EGSLDLGHAP_					0	0	0		ENSG00000181284|ENST00000323206|TMEM102	ENSG00000181284|ENST00000323206|TMEM102	ENSG00000181284|ENST00000323206|TMEM102	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2646484375	2	498.243264	994.471974	0.48005	0.00023918	-0.42611	-0.0002123	0.05394	2.6875E-05	498.243052688585	30.156	0.66521	30.156	29.888	30.553	0					74	23	5	0	0	0	0.29978	1	5563	5563		20.454	3.5113	1	876310			6833	7228	3546	3546	9328	9328					-0.025482973501880224
EGSLQRFY	8	Unmodified	_EGSLQRFY_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2647705078125	2	500.248349	998.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.728	1	30.728	30.228	31.228	0								0	0	0	0.33122	1	5658	5658		23.148	3.7094	1				6834	2705	3547	3547	9329	9329					-0.017156896249503006
EGTATNTEEF	10	Unmodified	_EGTATNTEEF_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7476806640625	2	549.732926	1097.4513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.278	1	37.278	36.778	37.778	0								0	0	0	0.35216	1	7660	7660		13.906	0	1				6835	273	3548	3548	9330	9330					-0.09352932520528157
EGTATNTEEF	10	Unmodified	_EGTATNTEEF_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.747802734375	2	549.732926	1097.4513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.076	1	37.164	36.664	37.664	0.08741								0	0	0	0.33945	1	7598	7598		19.257	2.1441	1				6836	273	3548	3548	9331	9331					-0.09352932520528157
EGTHRRYHRA	10	Unmodified	_EGTHRRYHRA_					0	0	0			REV__ENSG00000213793|ENST00000638862|ZNF888	REV__ENSG00000213793|ENST00000638862|ZNF888	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.8890686035156	3	428.22191	1281.6439	-0.18238	-7.8099E-05	-3.8464	-0.0016471	-4.0288	-0.0017252	428.22072084661494	33.875	0.17077	33.941	33.824	33.995	0.066704					7	5	2	0	0	0	0.32082	1	6621	6621		3.3196	0.47636	1	47938	+		6837	19044	3549	3549	9332	9332					0.014342921806928643
EGTPAQINE	9	Unmodified	_EGTPAQINE_					0	0	0			REV__ENSG00000185522|ENST00000329451|LMNTD2	REV__ENSG00000185522|ENST00000329451|LMNTD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.27734375	2	479.727446	957.44034	-0.025738	-1.2347E-05	-2.9775	-0.0014284	-3.0032	-0.0014407	479.7243881607873	23.324	0.16504	23.324	23.197	23.362	0					7	5	2	0	0	0	0.25323	1	3382	3382		10.074	2.7847	1	31472	+		6838	18387	3550	3550	9333	9333					-0.04008290104138723
EGTTGVYTGL	10	Unmodified	_EGTTGVYTGL_					0	0	0		ENSG00000236396|ENST00000588001|SLC35G4	ENSG00000236396|ENST00000588001|SLC35G4	ENSG00000236396|ENST00000588001|SLC35G4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8089294433594	2	499.245472	996.476391	0.22583	0.00011275	-1.8458	-0.00092149	-1.6199	-0.00080874	499.2440899786934	31.097	0.38236	31.097	30.979	31.361	0					21	13	3	0	0	0	0.32009	1	5763	5763		3.9444	0	1	43332			6839	8501	3551	3551	9334	9334					-0.021988329272971896
EGVELSRW	8	Unmodified	_EGVELSRW_					0	0	0			REV__ENST00000264649.10_1_17:40610912-40612943:+|nuORF	REV__ENST00000264649.10_1_17:40610912-40612943:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.23236083984375	2	488.248349	974.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.349	1	73.349	72.849	73.849	0								0	0	0	0.35466	1	18743	18743		12.532	1.7076	1		+		6840	19641	3552	3552	9335	9335					-0.006116896249523052
EGVISKIIIFS	11	Unmodified	_EGVISKIIIFS_					0	0	0		nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENST00000399586.2_1_X:74960734-74966719:-|nuORF;ENSG00000182670|ENST00000418766|TTC3	nc|ENSG00000182670|P53804-3|TTC3	nc|ENSG00000182670|P53804-3|TTC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8062133789062	2	603.360639	1204.70673	0.38411	0.00023176	-0.29735	-0.00017941	0.086761	5.2348E-05	603.3603534677424	73.391	0.54519	73.444	73.118	73.663	0.053833					26	19	2	0	0	0	0.32667	1	18803	18803		13.042	4.2971	1	135100			6841	7309	3553	3553	9336	9336					0.11256000405523992
EGVQPTVP	8	Unmodified	_EGVQPTVP_					0	0	0			REV__ENSG00000198952|ENST00000361813|SMG5	REV__ENSG00000198952|ENST00000361813|SMG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.21783447265625	2	413.718893	825.423233	0.61112	0.00025283	0.96269	0.00039828	1.5738	0.00065112	413.71986056817	77.428	0.85281	77.483	77.284	78.137	0.05542					44	30	2	0	0	0	0.3366	1	20025	20025		18.135	0	1	136960	+		6842	18900	3554	3554	9337	9337					0.0035383408071538724
EGVWPVTRETE	11	Unmodified	_EGVWPVTRETE_					0	0	0			REV__ENST00000602596.1_1_16:67518071-67518155:+|nuORF	REV__ENST00000602596.1_1_16:67518071-67518155:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8822326660156	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.134	1	15.134	14.634	15.634	0								0	0	0	0.38186	1	935	935		0.50596	0	1		+		6843	22641	3555	3555	9338	9338					-0.013567270243584062
EGWDQISSMKA	11	Unmodified	_EGWDQISSMKA_					0	0	0			REV__ENSG00000143344|ENST00000360851|RGL1	REV__ENSG00000143344|ENST00000360851|RGL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.8759460449219	3	417.860656	1250.56014	-0.18431	-7.7015E-05	1.9568	0.00081768	1.7725	0.00074067	417.861931434471	25.666	0.091311	25.666	25.591	25.683	0					4	2	2	0	0	0	0.43809	1	4122	4122		6.2344	0.45093	1	52792	+		6844	16165	3556	3556	9339	9339					-0.055120448218985985
EGWLLSNGR	9	Unmodified	_EGWLLSNGR_					0	0	0			REV__ENST00000531162.5_1_14:95600723-95607049:-|nuORF	REV__ENST00000531162.5_1_14:95600723-95607049:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2674560546875	2	516.267073	1030.51959	0.2331	0.00012034	0.57604	0.00029739	0.80914	0.00041773	516.7691764831296	24.033	0.72396	24.033	23.643	24.367	0					45	24	2	0	0	0	0.32371	1	3616	3616		5.2969	0.96765	1	130890	+		6845	22019	3557	3557	9340	9340					0.005554016406676965
EGYDEARRS	9	Unmodified	_EGYDEARRS_					0	0	0			REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2	REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.23388671875	2	541.746702	1081.47885	0.3697	0.00020028	3.9625	0.0021467	4.3322	0.0023469	542.2492115643385	19.756	0.69487	19.756	19.35	20.045	0					67	24	4	0	0	0	0.25314	2	2330	2330;2384		15.847	4.2069	1	120940	+		6846	13774	3558	3558	9341;9342	9341					-0.058629844696270084
EGYLNNGGGE	10	Unmodified	_EGYLNNGGGE_					0	0	0			REV__nc|ENSG00000100983|P48637-2|GSS	REV__nc|ENSG00000100983|P48637-2|GSS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.26361083984375	2	505.214703	1008.41485	0.2385	0.00012049	-1.1879	-0.00060016	-0.94944	-0.00047967	505.2141079766554	76.417	0.22142	76.417	76.367	76.588	0					12	7	2	0	0	0	0.31358	1	19694	19694		9.3831	0	1	132310	+		6847	14241	3559	3559	9343	9343					-0.08901764626546083
EGYPILQL	8	Unmodified	_EGYPILQL_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2572326660156	2	466.758018	931.501483	0.10857	5.0674E-05	-0.11168	-5.2128E-05	-0.003115	-1.4539E-06	466.7583510814651	79.414	3.9147	79.414	78.195	82.11	0					344	160	5	0	0	0	0.33441	1	20492	20492		26.884	0	1	24549000			6848	393	3560	3560	9344	9344					0.03299266665965206
EGYPILQL	8	Unmodified	_EGYPILQL_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.75775146484375	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.968	1	81.033	80.533	81.533	0.065094								0	0	0	0.35843	1	21059	21059		10.824	0	1				6849	393	3560	3560	9345	9345					0.03299266665965206
EGYTYGAQL	9	Unmodified	_EGYTYGAQL_					0	0	0		nc|ENSG00000091542|Q6P6C2-3|ALKBH5;ENSG00000091542|ENST00000399138|ALKBH5;nc|ENSG00000091542|Q6P6C2-1|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.3034973144531	2	501.232364	1000.45018	0.40997	0.00020549	0.043326	2.1716E-05	0.4533	0.00022721	501.2326673420653	71.655	0.86784	71.712	71.487	72.355	0.056572					36	31	2	0	0	0	0.24688	1	18381	18381		14.838	1.3304	1	145490			6850	1406	3561	3561	9346	9346					-0.05003102098748968
EHERKLRQEL	10	Unmodified	_EHERKLRQEL_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.2320251464844	3	446.580992	1336.72115	-0.0065848	-2.9407E-06	-2.7711	-0.0012375	-2.7776	-0.0012404	446.5797245587679	30.008	0.38142	30.035	29.728	30.109	0.027157					19	12	2	0	0	0	0.32034	1	5363	5363		4.7159	0.30977	1	75481	+		6851	16854	3562	3562	9347	9347					0.06625465606362013
EHFFSVSL	8	Unmodified	_EHFFSVSL_					0	0	0			REV__ENST00000603302.5_1_4:108956031-108956223:+|nuORF	REV__ENST00000603302.5_1_4:108956031-108956223:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.66790771484375	2	483.239993	964.465432	-0.97885	-0.00047302	-0.59556	-0.0002878	-1.5744	-0.00076082	483.23972438519195	35.008	0.84766	35.008	34.618	35.466	0					37	30	2	0	0	0	0.33245	1	6903	6903		19.439	0	1	101680	+		6852	22648	3563	3563	9348	9348					-0.0182219051090442
EHFFSVSL	8	Unmodified	_EHFFSVSL_					0	0	0			REV__ENST00000603302.5_1_4:108956031-108956223:+|nuORF	REV__ENST00000603302.5_1_4:108956031-108956223:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.668212890625	2	483.239993	964.465432	-0.67732	-0.00032731	-1.1349	-0.00054845	-1.8123	-0.00087576	483.2394643445761	34.803	0.49034	34.881	34.704	35.195	0.077377					24	17	2	0	0	0	0.33245	1	6881	6881		19.439	1.304	1	89806	+		6853	22648	3563	3563	9349	9349					-0.0182219051090442
EHGLIHELFI	10	Unmodified	_EHGLIHELFI_					0	0	0		nc|ENSG00000186075|Q6X784-2|ZPBP2;ENSG00000186075|ENST00000348931|ZPBP2	nc|ENSG00000186075|Q6X784-2|ZPBP2	nc|ENSG00000186075|Q6X784-2|ZPBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.2210998535156	3	403.220513	1206.63971	-0.086379	-3.483E-05	1.3407	0.00054061	1.2544	0.00050578	403.22119986799623	31.887	0.8963	31.928	31.772	32.669	0.040989					60	31	3	0	0	0	0.38284	1	6011	6011		6.6304	0.84694	1	732170			6854	7584	3564	3564	9350	9350					0.04465389914412299
EHIYEWREI	9	Unmodified	_EHIYEWREI_					0	0	0		nc|ENSG00000174844|Q6ZR08|DNAH12;ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08-2|DNAH12;nc|ENSG00000174844|Q6ZR08-3|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.9329528808594	3	425.543655	1273.60914	0.01227	5.2214E-06	-0.23392	-9.9545E-05	-0.22165	-9.4324E-05	425.5435186289586	86.074	1.7236	86.158	85.26	86.984	0.084251					131	67	3	0	0	0	0.26238	1	22471	22471		0.23584	0	1	189040			6855	6822	3565	3565	9351	9351					-0.016723884706379977
EHKKQQRRR	9	Unmodified	_EHKKQQRRR_					0	0	0			REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3696899414062	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.27	1	112.27	111.77	112.77	0								0	0	0	0.2672	1	29188	29188		0.52476	0	1		+		6856	20859	3566	3566	9352	9352					0.1007114448577795
EHKKQQRRR	9	Unmodified	_EHKKQQRRR_					0	0	0			REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3687133789062	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.65	1	115.65	115.15	116.15	0								0	0	0	0.2672	1	29964	29964		0.52476	0	1		+		6857	20859	3566	3566	9353	9353					0.1007114448577795
EHKKQQRRR	9	Unmodified	_EHKKQQRRR_					0	0	0			REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3684692382812	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.14	1	117.14	116.64	117.64	0								0	0	0	0.2672	1	30304	30304		0.52476	0	1		+		6858	20859	3566	3566	9354	9354					0.1007114448577795
EHKKQQRRR	9	Unmodified	_EHKKQQRRR_					0	0	0			REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3690185546875	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.69	1	117.69	117.19	118.19	0								0	0	0	0.2672	1	30425	30425		0.52476	0	1		+		6859	20859	3566	3566	9355	9355					0.1007114448577795
EHKKQQRRR	9	Unmodified	_EHKKQQRRR_					0	0	0			REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.36865234375	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.25	1	118.25	117.75	118.75	0								0	0	0	0.2672	1	30554	30554		0.52476	0	1		+		6860	20859	3566	3566	9356	9356					0.1007114448577795
EHKKQQRRR	9	Unmodified	_EHKKQQRRR_					0	0	0			REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3689575195312	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.88	1	118.88	118.38	119.38	0								0	0	0	0.2672	1	30696	30696		0.52476	0	1		+		6861	20859	3566	3566	9357	9357					0.1007114448577795
EHKKQQRRR	9	Unmodified	_EHKKQQRRR_					0	0	0			REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3684692382812	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.92	1	119.92	119.42	120.42	0								0	0	0	0.2672	1	30919	30919		0.52476	0	1		+		6862	20859	3566	3566	9358	9358					0.1007114448577795
EHKKQQRRR	9	Unmodified	_EHKKQQRRR_					0	0	0			REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.368896484375	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.18	1	115.2	114.7	115.7	0.018738								0	0	0	0.2672	1	29929	29929		0.52476	0	1		+		6863	20859	3566	3566	9359	9359					0.1007114448577795
EHKKQQRRR	9	Unmodified	_EHKKQQRRR_					0	0	0			REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3685302734375	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.04	1	117.06	116.56	117.56	0.020988								0	0	0	0.2672	1	30351	30351		0.52476	0	1		+		6864	20859	3566	3566	9360	9360					0.1007114448577795
EHKKQQRRR	9	Unmodified	_EHKKQQRRR_					0	0	0			REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3688354492188	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.92	1	117.95	117.45	118.45	0.023476								0	0	0	0.2672	1	30554	30554		0.52476	0	1		+		6865	20859	3566	3566	9361	9361					0.1007114448577795
EHKKQQRRR	9	Unmodified	_EHKKQQRRR_					0	0	0			REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3685913085938	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.32	1	119.35	118.85	119.85	0.027756								0	0	0	0.2672	1	30866	30866		0.52476	0	1		+		6866	20859	3566	3566	9362	9362					0.1007114448577795
EHKKQQRRR	9	Unmodified	_EHKKQQRRR_					0	0	0			REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	REV__ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.368896484375	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.45	1	119.48	118.98	119.98	0.027756								0	0	0	0.2672	1	30895	30895		0.52476	0	1		+		6867	20859	3566	3566	9363	9363					0.1007114448577795
EHLARQHMEQK	11	Unmodified	_EHLARQHMEQK_					0	0	0		ENSG00000008197|ENST00000008391|TFAP2D	ENSG00000008197|ENST00000008391|TFAP2D	ENSG00000008197|ENST00000008391|TFAP2D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.95941162109375	3	469.570098	1405.68847	0.18544	8.7077E-05	-0.71975	-0.00033797	-0.53431	-0.00025089	469.90403071028703	88.189	0.2886	88.278	88.231	88.52	0.089195					19	12	2	0	0	0	0.33336	1	23325	23325		1.1098	0.48293	1	73843			6868	390	3567	3567	9364	9364					0.0018493521185973805
EHLIYPQLA	9	Unmodified	_EHLIYPQLA_					0	0	0			REV__ENST00000357137.8_1_22:41253121-41277981:+|nuORF	REV__ENST00000357137.8_1_22:41253121-41277981:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.295654296875	2	542.295299	1082.57605	0.14293	7.7509E-05	0.14644	7.9412E-05	0.28936	0.00015692	542.295514237968	13.503	0.56639	13.503	13.336	13.902	0					42	19	4	0	0	0	0.31038	1	440	440		7.2892	0	1	340850	+		6869	20209	3568	3568	9365	9365					0.038060294773458736
EHLQLWFC	8	Unmodified	_EHLQLWFC_					0	0	0			REV__ENST00000261489.6_2_13:45010747-45010900:-|nuORF	REV__ENST00000261489.6_2_13:45010747-45010900:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7833862304688	2	538.25512	1074.49569	0.30074	0.00016187	-0.36487	-0.00019639	-0.064132	-3.4519E-05	538.2546469057496	22.582	0.48467	22.582	22.36	22.845	0					20	16	2	0	0	0	0.34414	1	3211	3211		2.0598	0	1	43137	+		6870	19595	3569	3569	9366	9366					-0.03858155117382012
EHLVKAREDL	10	Unmodified	_EHLVKAREDL_					0	0	0			REV__nc|ENSG00000137699|Q14134-2|TRIM29	REV__nc|ENSG00000137699|Q14134-2|TRIM29	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.7939453125	2	605.332944	1208.65134	0.36155	0.00021886	0.04583	2.7742E-05	0.40738	0.0002466	605.3342335372215	63.211	0.13743	63.202	63.104	63.242	-0.0085526					5	4	2	0	0	0	0.31691	1	15619	15619		9.3831	2.66	1	71398	+		6871	15877	3570	3570	9367	9367					0.05535586937753578
EHMKEEERW	9	Unmodified	_EHMKEEERW_					0	0	0			REV__ENSG00000277322|ENST00000619213|GOLGA6L6	REV__ENSG00000277322|ENST00000619213|GOLGA6L6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.2837524414062	2	637.285137	1272.55572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.581	1	96.581	96.081	97.081	0								0	0	0	0.26704	1	25808	25808		0.6015	0.076735	1		+		6872	19342	3571	3571	9368	9368					-0.06965509244787427
EIAFSIRDN	9	Unmodified	_EIAFSIRDN_					0	0	0		ENSG00000172967|ENST00000684488|XKR3	ENSG00000172967|ENST00000684488|XKR3	ENSG00000172967|ENST00000684488|XKR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.304443359375	2	532.772188	1063.52982	0.15673	8.3503E-05	-3.1388	-0.0016723	-2.9821	-0.0015888	533.2718352057094	17.188	0.71707	17.071	16.828	17.545	-0.11739					29	25	2	0	0	0	0.26204	1	1684	1684		0.35063	0.081612	1	19175			6873	6681	3572	3572	9369	9369					0.0005996457523451681
EIAFTLLLF	9	Unmodified	_EIAFTLLLF_					0	0	0			REV__nc|ENSG00000197548|O95352-3|ATG7	REV__nc|ENSG00000197548|O95352-3|ATG7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.209228515625	2	533.812793	1065.61103	0.28086	0.00014993	0.78743	0.00042034	1.0683	0.00057027	534.3152404755093	93.622	0.50615	93.709	93.682	94.188	0.086678					45	38	2	0	0	0	0.25417	1	25052	25052		8.5933	0	1	138130	+		6874	23155	3573	3573	9370	9370					0.08085272285279643
EIAHAYYDM	9	Unmodified	_EIAHAYYDM_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7398071289062	2	556.739499	1111.46445	0.90277	0.00050261	-0.58743	-0.00032705	0.31534	0.00017556	556.7386671081788	56.572	0.81602	56.552	56.326	57.142	-0.019077					64	29	3	0	0	0	0.28128	1	13565	13565		11.64	0	1	1067300			6875	8173	3574	3574	9371	9371					-0.08682772942142947
EIAHSILLC	9	Unmodified	_EIAHSILLC_					0	0	0			REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.80328369140625	2	499.770603	997.526652	0.3119	0.00015588	-2.9529	-0.0014758	-2.641	-0.0013199	499.7687787321795	23.959	0.1767	23.887	23.821	23.997	-0.072559					7	5	2	0	0	0	0.24688	1	3594	3594		14.838	3.198	1	31279	+		6876	16183	3575	3575	9372	9372					0.027789981968794564
EICLLSFPK	9	Unmodified	_EICLLSFPK_					0	0	0		nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236;ZNF236|p.A950Hfs*33|1|0.2|ENSG00000130856|chr18:76912291-76912291|G/-|frameshift_variant;nc|ENSG00000130856|Q9UL36-2|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.30322265625	2	525.288628	1048.5627	0.42317	0.00022229	3.3496	0.0017595	3.7728	0.0019818	525.2911931298347	26.731	0.6255	26.731	26.41	27.035	0					57	21	4	0	0	0	0.25202	1	4435	4435		10.824	0	1	159640			6877	3526	3576	3576	9373	9373					0.04036455373739045
EIDDNTPKF	9	Unmodified	_EIDDNTPKF_					0	0	0			REV__ENSG00000023516|ENST00000025301|AKAP11	REV__ENSG00000023516|ENST00000025301|AKAP11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.330078125	2	539.756204	1077.49785	0.35101	0.00018946	-1.2754	-0.00068842	-0.92442	-0.00049896	539.7553855651036	76.247	0.75769	76.247	75.996	76.754	0					48	26	2	0	0	0	0.24471	1	19564	19564		17.113	9.8237	1	274010	+		6878	13095	3577	3577	9374	9374					-0.03779447898568833
EIDLGVNKN	9	Unmodified	_EIDLGVNKN_					0	0	0			REV__nc|ENSG00000156261|P50990-2|CCT8	REV__nc|ENSG00000156261|P50990-2|CCT8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2579345703125	2	501.266739	1000.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.538	1	80.511	80.011	81.011	-0.026825								0	0	0	0.22377	1	20919	20919		14.838	0.93222	1		+		6879	16739	3578	3578	9375	9375					0.01868562200957058
EIDWLKRI	8	Unmodified	_EIDWLKRI_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2928466796875	2	536.811116	1071.60768	0.90788	0.00048736	-1.2698	-0.00068162	-0.36188	-0.00019426	536.8103698991657	37.413	0.49438	37.413	37.152	37.646	0					31	17	2	0	0	0	0.42371	1	7664	7664		14.838	1.7958	1	602660			6880	3159;2560	3579	3579	9376	9376					0.07474022231281197
EIEEAYEKF	9	Unmodified	_EIEEAYEKF_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;ENSG00000172239|ENST00000306846|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.2576904296875	2	579.271687	1156.52882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.127	1	61.127	60.627	61.627	0								0	0	0	0.22065	1	14995	14995		15.847	2.8047	1				6881	6614	3580	3580	9377	9377					-0.043182945843454945
EIEEYISSLYE	11	Unmodified	_EIEEYISSLYE_					0	0	0			REV__ENSG00000124198|ENST00000371917|ARFGEF2	REV__ENSG00000124198|ENST00000371917|ARFGEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.5703125	3	458.881891	1373.62384	0.32782	0.00015043	1.2207	0.00056016	1.5485	0.00071059	458.8826290580114	47.578	0.35706	47.578	47.44	47.797	0					23	12	2	0	0	0	0.33146	1	10856	10856		6.6235	1.9075	1	245880	+		6882	15218	3581	3581	9378	9378					-0.04802405903774343
EIEGVKWK	8	Unmodified	_EIEGVKWK_					0	0	0			REV__ENSG00000148700|ENST00000356080|ADD3	REV__ENSG00000148700|ENST00000356080|ADD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7754821777344	2	494.776742	987.538931	-0.081235	-4.0193E-05	-3.2775	-0.0016216	-3.3588	-0.0016618	494.7752970994203	12.201	0.15796	12.133	12.068	12.226	-0.06806					10	6	2	0	0	0	0.46022	1	76	76		2.3027	0	1	26801	+		6883	16431	3582	3582	9379	9379					0.0446635793156247
EIEGVKWK	8	Unmodified	_EIEGVKWK_					0	0	0			REV__ENSG00000148700|ENST00000356080|ADD3	REV__ENSG00000148700|ENST00000356080|ADD3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	494.776742	987.538931	0.050795	2.5132E-05	-3.318	-0.0016417	-3.2673	-0.0016166	494.7752767445058	12.201	0.10922	12.201	12.135	12.245	0	0.05892	5.6498E-05	NaN	2.3027	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29023	+		6884	16431	3582	3582							0.0446635793156247
EIEGVKWK	8	Unmodified	_EIEGVKWK_					0	0	0			REV__ENSG00000148700|ENST00000356080|ADD3	REV__ENSG00000148700|ENST00000356080|ADD3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	494.776742	987.538931	0.13855	6.8553E-05	-5.7891	-0.0028643	-5.6505	-0.0027957	494.77544258491207	12.188	0.11179	12.091	12.037	12.148	-0.096607	-0.050635	-0.0023887	NaN	2.3027	12	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26782	+		6885	16431	3582	3582							0.0446635793156247
EIEGVKWK	8	Unmodified	_EIEGVKWK_					0	0	0			REV__ENSG00000148700|ENST00000356080|ADD3	REV__ENSG00000148700|ENST00000356080|ADD3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	494.776742	987.538931	-0.081235	-4.0193E-05	-3.2775	-0.0016216	-3.3588	-0.0016618	494.7752970994203	12.201	0.15796	12.133	12.068	12.226	-0.06806	-0.0082849	9.6589E-05	NaN	2.3027	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26801	+		6886	16431	3582	3582							0.0446635793156247
EIELVIHRLEA	11	Unmodified	_EIELVIHRLEA_					0	0	0		nc|ENSG00000141577|Q9UPN4-3|CEP131;ENSG00000141577|ENST00000450824|CEP131;nc|ENSG00000141577|Q9UPN4|CEP131	nc|ENSG00000141577|Q9UPN4-3|CEP131	nc|ENSG00000141577|Q9UPN4-3|CEP131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.742431640625	3	441.253993	1320.74015	0.41775	0.00018433	0.35312	0.00015582	0.77087	0.00034015	441.254104458127	32.178	0.7231	32.22	31.968	32.691	0.042366					61	25	3	0	0	0	0.33236	1	6038	6038		2.4348	0.69251	1	515590			6887	4398	3583	3583	9380	9380					0.09261002177413502
EIESEQEMKE	10	Unmodified	_EIESEQEMKE_					0	0	0		ENST00000531055.1_1_6:26370743-26373574:+|nuORF;nc|ENSG00000186470|P78410-3|BTN3A2;nc|ENSG00000186470|P78410-2|BTN3A2;ENSG00000186470|ENST00000377708|BTN3A2;ENST00000604202.1_1_6:26373162-26373348:+|nuORF	ENST00000531055.1_1_6:26370743-26373574:+|nuORF	ENST00000531055.1_1_6:26370743-26373574:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.2747802734375	2	626.2741	1250.53365	0.49333	0.00030896	0.17585	0.00011013	0.66917	0.00041909	626.2741578017927	57.033	0.63345	57.033	56.772	57.405	0					63	23	4	0	0	0	0.40262	1	13740	13740		2.9952	0	1	593590			6888	7620	3584	3584	9381	9381					-0.0815977850386389
EIFDGIQPK	9	Unmodified	_EIFDGIQPK_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;ENST00000469700.1_1_20:47707305-47712721:+|nuORF	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2609252929688	2	523.779482	1045.54441	0.16829	8.8148E-05	-0.2174	-0.00011387	-0.049103	-2.5719E-05	523.7793296690189	46.079	0.35635	46.139	45.951	46.307	0.059834					16	12	2	0	0	0	0.17242	1	10337	10337		36.127	15.673	1	247050			6889	3141	3585	3585	9382	9382					0.023460367233838042
EIFDGIQPK	9	Unmodified	_EIFDGIQPK_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;ENST00000469700.1_1_20:47707305-47712721:+|nuORF	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2601318359375	2	523.779482	1045.54441	0.50895	0.00026658	-0.97523	-0.00051081	-0.46628	-0.00024423	523.7791095261512	46.154	0.40906	46.219	45.9	46.309	0.065048					22	14	2	0	0	0	0.17242	1	10363	10363		36.127	21.289	1	257090			6890	3141	3585	3585	9383	9383					0.023460367233838042
EIFFFLILS	9	Unmodified	_EIFFFLILS_					0	0	0			REV__ENST00000486787.1_1_2:232160870-232209803:+|nuORF	REV__ENST00000486787.1_1_2:232160870-232209803:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8209228515625	2	564.820618	1127.62668	0.60405	0.00034118	0.3578	0.00020209	0.96185	0.00054327	564.8206371525227	78.392	2.346	78.392	77.149	79.495	0					164	90	3	0	0	0	0.28128	1	20281	20281		11.64	0	1	668590	+		6891	21556	3586	3586	9384	9384					0.06797558802350068
EIFFFLILS	9	Unmodified	_EIFFFLILS_					0	0	0			REV__ENST00000486787.1_1_2:232160870-232209803:+|nuORF	REV__ENST00000486787.1_1_2:232160870-232209803:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.8207397460938	2	564.820618	1127.62668	0.27282	0.0001541	0.96339	0.00054414	1.2362	0.00069824	564.8209904792535	80.412	2.9878	80.385	79.523	82.511	-0.026825					328	118	4	0	0	0	0.32733	1	20721	20721		4.756	0.42677	1	2120200	+		6892	21556	3586	3586	9385	9385					0.06797558802350068
EIFFKRRL	8	Unmodified	_EIFFKRRL_					0	0	0		ENSG00000130309|ENST00000252599|COLGALT1	ENSG00000130309|ENST00000252599|COLGALT1	ENSG00000130309|ENST00000252599|COLGALT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3119506835938	2	554.834926	1107.6553	0.43387	0.00024073	-2.4413	-0.0013545	-2.0075	-0.0011138	554.8336375513231	41.817	0.73708	41.908	41.807	42.544	0.090252					38	26	2	0	0	0	0.33245	1	9134	9134		13.508	2.684	1	1075800			6893	3467	3587	3587	9386	9386					0.10577721222125547
EIFFPCVY	8	Unmodified	_EIFFPCVY_					0	0	0		ENST00000220003.13_1_15:75095013-75095301:+|nuORF	ENST00000220003.13_1_15:75095013-75095301:+|nuORF	ENST00000220003.13_1_15:75095013-75095301:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8163146972656	2	509.241147	1016.46774	0.15688	7.9887E-05	3.2862	0.0016735	3.4431	0.0017534	509.242931797994	41.121	0.54057	41.217	40.881	41.422	0.096626					28	19	3	0	0	0	0.34337	1	8732	8732		5.2307	0.90143	1	185800			6894	8831	3588	3588	9387	9387					-0.03983478097450188
EIFFPCVY	8	Unmodified	_EIFFPCVY_					0	0	0		ENST00000220003.13_1_15:75095013-75095301:+|nuORF	ENST00000220003.13_1_15:75095013-75095301:+|nuORF	ENST00000220003.13_1_15:75095013-75095301:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	509.241147	1016.46774	0.18626	9.4849E-05	3.7704	0.00192	3.9566	0.0020149	509.242807391901	41.237	0.42773	41.327	41.029	41.456	0.090252	0.054753	0.00019653	NaN	5.2307	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180240			6895	8831	3588	3588							-0.03983478097450188
EIFIQQIQVI	10	Unmodified	_EIFIQQIQVI_					0	0	0			REV__ENST00000376621.7_1_6:30513189-30513468:-|nuORF	REV__ENST00000376621.7_1_6:30513189-30513468:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.22052001953125	3	410.907934	1229.70197	0.26837	0.00011028	1.0443	0.00042911	1.3127	0.00053939	410.90899306415935	39.877	0.24389	39.969	39.75	39.994	0.09267					11	8	2	0	0	0	0.3179	1	8409	8409		5.7834	0	1	78339	+		6896	20491	3589	3589	9388	9388					0.09631116262767137
EIGETISI	8	Unmodified	_EIGETISI_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.30517578125	2	431.231833	860.449113	-0.047591	-2.0523E-05	-1.5096	-0.00065097	-1.5572	-0.0006715	431.2309058767516	68.428	0.37926	68.428	68.329	68.708	0					19	13	2	0	0	0	0.21687	1	17299	17299		39.957	18.211	1	268410	+		6897	14116	3590	3590	9389	9389					0.01330683532353305
EIGETISI	8	Unmodified	_EIGETISI_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	431.231833	860.449113	-0.13598	-5.8639E-05	0.48318	0.00020836	0.3472	0.00014972	431.232169703471	68.397	0.3749	68.469	68.33	68.705	0.071938	0.028652	0.00061138	NaN	48.346	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167340	+		6898	14116	3590	3590							0.01330683532353305
EIGETISI	8	Unmodified	_EIGETISI_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	431.231833	860.449113	0.010045	4.3316E-06	-1.3978	-0.00060279	-1.3878	-0.00059846	431.23179136173644	68.443	0.34016	68.424	68.284	68.624	-0.01915	-0.016224	-0.0010109	NaN	48.346	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160910	+		6899	14116	3590	3590							0.01330683532353305
EIGRIVSR	8	Unmodified	_EIGRIVSR_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3;ENST00000548067.1_1_12:101011523-101012389:+|nuORF	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.77874755859375	2	465.279983	928.545414	0.20261	9.427E-05	-0.57216	-0.00026622	-0.36955	-0.00017195	465.2795629375898	78.763	0.96303	78.821	78.499	79.462	0.058151					82	41	3	0	0	0	0.34294	1	20449	20449		7.2892	2.0586	1	409860			6900	4231	3591	3591	9390	9390					0.07828295882939074
EIHKIRTK	8	Unmodified	_EIHKIRTK_					0	0	0		ENST00000567017.5_1_16:718199-721765:+|nuORF;ENST00000569943.6_1_16:718357-720809:+|nuORF	ENST00000567017.5_1_16:718199-721765:+|nuORF	ENST00000567017.5_1_16:718199-721765:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.3330078125	2	512.816733	1023.61891	0.28137	0.00014429	0.49163	0.00025212	0.773	0.00039641	512.8168275549109	32.977	0.56748	32.977	32.692	33.259	0					27	19	2	0	0	0	0.32435	1	6422	6422		7.2892	0	1	142530			6901	11991	3592	3592	9391	9391					0.10804844325423346
EIHLVQKLG	9	Unmodified	_EIHLVQKLG_					0	0	0		ENSG00000197978|ENST00000618348|GOLGA6L9;ENSG00000278662|ENST00000610657|GOLGA6L10;ENSG00000184206|ENST00000510439|GOLGA6L4	ENSG00000197978|ENST00000618348|GOLGA6L9	ENSG00000197978|ENST00000618348|GOLGA6L9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3382568359375	2	518.811116	1035.60768	0.038754	2.0106E-05	0.40201	0.00020857	0.44077	0.00022868	518.8109073927504	25.656	0.45848	25.6	25.219	25.677	-0.055931					19	15	2	0	0	0	0.25706	1	4041	4041		6.7232	1.4925	1	62394			6902	7437	3593	3593	9392	9392					0.09130022231261137
EIHLVQKLG	9	Unmodified	_EIHLVQKLG_					0	0	0		ENSG00000197978|ENST00000618348|GOLGA6L9;ENSG00000278662|ENST00000610657|GOLGA6L10;ENSG00000184206|ENST00000510439|GOLGA6L4	ENSG00000197978|ENST00000618348|GOLGA6L9	ENSG00000197978|ENST00000618348|GOLGA6L9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	518.811116	1035.60768	0.049425	2.5642E-05	0.54511	0.00028281	0.59453	0.00030845	518.8109352939636	25.729	0.41743	25.707	25.356	25.774	-0.022238	0.053188	8.5499E-05	NaN	6.7232	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42709			6903	7437	3593	3593							0.09130022231261137
EIIAKSKK	8	Unmodified	_EIIAKSKK_					0	0	0			REV__ENST00000482303.1_1_3:184045142-184045513:+|nuORF	REV__ENST00000482303.1_1_3:184045142-184045513:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7584228515625	2	458.794935	915.575317	0.18456	8.4676E-05	0.62445	0.00028649	0.80901	0.00037117	458.7952675576772	19.989	0.3685	19.873	19.729	20.098	-0.11592					16	12	2	0	0	0	0.34408	1	2428	2428		2.3027	0	1	45257	+		6904	14852	3594	3594	9393	9393					0.11415234828291432
EIIPLNIIEQ	10	Unmodified	_EIIPLNIIEQ_					0	0	0		nc|ENSG00000004948|P30988-4|CALCR;nc|ENSG00000004948|P30988-1|CALCR;nc|ENSG00000004948|P30988-3|CALCR;ENSG00000004948|ENST00000426151|CALCR;ENST00000423724.5_1_7:93055670-93072938:-|nuORF	nc|ENSG00000004948|P30988-4|CALCR	nc|ENSG00000004948|P30988-4|CALCR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8095092773438	2	591.342446	1180.67034	-0.24263	-0.00014348	1.9505	0.0011534	1.7079	0.00101	591.3436366488153	34.421	0.47721	34.421	34.247	34.725	0					28	16	3	0	0	0	0.31581	1	6793	6793		11.495	1.4208	1	149780			6905	12555	3595	3595	9394	9394					0.0872312350879838
EIIVEQIPKH	10	Unmodified	_EIIVEQIPKH_					0	0	0			REV__ADH4|p.F365Lfs*3|1|0.19|ENSG00000198099|chr4:99126620-99126620|T/-|frameshift_variant	REV__ADH4|p.F365Lfs*3|1|0.19|ENSG00000198099|chr4:99126620-99126620|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3471069335938	2	603.348063	1204.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.486	1	93.572	93.072	94.072	0.08667								0	0	0	0.37157	1	24900	24900		5.7319	0.83484	1		+		6906	13086	3596	3596	9395	9395					0.08741945602923806
EIIYTIYEI	9	Unmodified	_EIIYTIYEI_					0	0	0		nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3043823242188	2	578.810448	1155.60634	0.39338	0.00022769	0.98246	0.00056866	1.3758	0.00079636	578.8110557854934	66.482	0.64209	66.482	66.183	66.825	0					35	22	2	0	0	0	0.25622	1	16740	16740		7.2892	0.56607	1	226420			6907	3393	3597	3597	9396	9396					0.034763433518719467
EIIYTIYEI	9	Unmodified	_EIIYTIYEI_					0	0	0		nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	578.810448	1155.60634	0.40815	0.00023624	1.0181	0.0005893	1.4263	0.00082554	578.8109093903128	66.312	0.41254	66.396	66.219	66.631	0.083832	-0.044133	-6.9092E-05	NaN	7.2892	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201710			6908	3393	3597	3597							0.034763433518719467
EIIYTIYEI	9	Unmodified	_EIIYTIYEI_					0	0	0		nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	578.810448	1155.60634	0.24376	0.00014109	1.2611	0.00072994	1.5049	0.00087103	578.8108690348971	66.456	0.62403	66.442	66.141	66.765	-0.013588	0.0020591	0.0002122	NaN	7.2892	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198130			6909	3393	3597	3597							0.034763433518719467
EIKASIKN	8	Unmodified	_EIKASIKN_					0	0	0		ENST00000555826.5_1_14:45369638-45373733:+|nuORF;ENSG00000179476|ENST00000325192|C14orf28	ENST00000555826.5_1_14:45369638-45373733:+|nuORF	ENST00000555826.5_1_14:45369638-45373733:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.75262451171875	2	451.768917	901.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.586	1	36.679	36.179	37.179	0.093018								0	0	0	0.35663	1	7441	7441		11.64	0	1				6910	7127	3598	3598	9397	9397					0.06858071414524147
EIKDRFAF	8	Unmodified	_EIKDRFAF_					0	0	0		nc|ENSG00000162631|Q9Y2I2-2|NTNG1;ENST00000294649.8_1_1:107691215-107950335:+|nuORF;nc|ENSG00000162631|Q9Y2I2-1|NTNG1;nc|ENSG00000162631|Q9Y2I2-5|NTNG1;nc|ENSG00000162631|Q9Y2I2-4|NTNG1;nc|ENSG00000162631|Q9Y2I2-6|NTNG1;ENSG00000162631|ENST00000370068|NTNG1;ENST00000477948.1_1_1:107866915-107871621:+|nuORF	nc|ENSG00000162631|Q9Y2I2-2|NTNG1	nc|ENSG00000162631|Q9Y2I2-2|NTNG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7874755859375	2	513.274367	1024.53418	0.53408	0.00027413	-3.0335	-0.001557	-2.4995	-0.0012829	513.7756839431931	47.664	0.076157	47.712	47.669	47.745	0.047523					4	2	2	0	0	0	0.33995	1	10832	10832		5.7604	0	1	90502			6911	5590	3599	3599	9398	9398					0.02289473788800933
EIKDRFAF	8	Unmodified	_EIKDRFAF_					0	0	0		nc|ENSG00000162631|Q9Y2I2-2|NTNG1;ENST00000294649.8_1_1:107691215-107950335:+|nuORF;nc|ENSG00000162631|Q9Y2I2-1|NTNG1;nc|ENSG00000162631|Q9Y2I2-5|NTNG1;nc|ENSG00000162631|Q9Y2I2-4|NTNG1;nc|ENSG00000162631|Q9Y2I2-6|NTNG1;ENSG00000162631|ENST00000370068|NTNG1;ENST00000477948.1_1_1:107866915-107871621:+|nuORF	nc|ENSG00000162631|Q9Y2I2-2|NTNG1	nc|ENSG00000162631|Q9Y2I2-2|NTNG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8191528320312	2	513.274367	1024.53418	0.40965	0.00021026	-0.11999	-6.1587E-05	0.28966	0.00014868	513.2741490805256	44.653	0.24959	44.722	44.567	44.817	0.068569					12	8	2	0	0	0	0.34218	1	9866	9866		5.2307	0	1	101160			6912	5590	3599	3599	9399	9399					0.02289473788800933
EIKDRLNRPH	10	Unmodified	_EIKDRLNRPH_					0	0	0			REV__HIVEP1|p.S2208Qfs*19|1|0.2|ENSG00000095951|chr6:12161570-12161570|C/-|frameshift_variant	REV__HIVEP1|p.S2208Qfs*19|1|0.2|ENSG00000095951|chr6:12161570-12161570|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2643737792969	3	426.573949	1276.70002	-0.28175	-0.00012019	0.16782	7.159E-05	-0.11392	-4.8597E-05	426.57405232166053	17.211	0.40293	17.094	16.828	17.231	-0.11739					23	14	2	0	0	0	0.32068	1	1542	1542		3.5871	2.6615	1	45937	+		6913	14108	3600	3600	9400	9400					0.07273500297515056
EIKHARVS	8	Unmodified	_EIKHARVS_					0	0	0		ENST00000606570.1_1_20:17923732-17923837:-|nuORF	ENST00000606570.1_1_20:17923732-17923837:-|nuORF	ENST00000606570.1_1_20:17923732-17923837:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2723083496094	2	470.272158	938.529764	0.00050463	2.3731E-07	0.29287	0.00013773	0.29338	0.00013797	470.2722357752448	81.938	1.4045	82.007	81.461	82.866	0.068993					143	59	4	0	0	0	0.4354	1	21376	21376		10.824	0	1	3675100			6914	12299	3601	3601	9401	9401					0.05804009365908769
EIKHARVS	8	Unmodified	_EIKHARVS_					0	0	0		ENST00000606570.1_1_20:17923732-17923837:-|nuORF	ENST00000606570.1_1_20:17923732-17923837:-|nuORF	ENST00000606570.1_1_20:17923732-17923837:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2721862792969	2	470.272158	938.529764	0.28184	0.00013254	0.030369	1.4282E-05	0.31221	0.00014682	470.2721015359529	82.116	1.5295	82.092	81.599	83.129	-0.02404					135	60	4	0	0	0	0.4354	1	21440	21440		10.824	2.2306	1	3977000			6915	12299	3601	3601	9402	9402					0.05804009365908769
EIKKHRNFIV	10	Unmodified	_EIKKHRNFIV_					0	0	0			REV__ENST00000376395.8_2_9:86275686-86275806:-|nuORF	REV__ENST00000376395.8_2_9:86275686-86275806:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3843994140625	2	642.382771	1282.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.046	1	95.044	94.544	95.544	-0.0020142								0	0	0	0.37807	1	25378	25378		2.9952	0.26005	1		+		6916	20489	3602	3602	9403	9403					0.12092449342367217
EIKKNRNV	8	Unmodified	_EIKKNRNV_					0	0	0			REV__ENST00000537303.5_1_19:15472501-15484105:-|nuORF	REV__ENST00000537303.5_1_19:15472501-15484105:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7985534667969	2	500.79854	999.582528	0.54847	0.00027468	-0.74734	-0.00037427	-0.19887	-9.9593E-05	500.7978942113068	84.187	1.4366	84.17	83.698	85.135	-0.01683					141	61	4	0	0	0	0.42077	1	22098	22098		15.847	1.0089	1	3310400	+		6917	14438	3603	3603	9404	9404					0.08271967428709104
EIKKQLTRRP	10	Unmodified	_EIKKQLTRRP_					0	0	0			REV__ENSG00000106804|ENST00000223642|C5	REV__ENSG00000106804|ENST00000223642|C5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.8930053710938	2	634.893503	1267.77245	0.024015	1.5247E-05	-0.3362	-0.00021345	-0.31218	-0.0001982	634.8929842786309	97.302	0.95656	97.302	97.002	97.959	0					294	99	4	0	0	0	0.36578	3	26043	26004;26043;26080		15.248	4.6317	1	1113100	+		6918	14536	3604	3604	9405;9406;9407	9406					0.14927834371087556
EIKKSRRHP	9	Unmodified	_EIKKSRRHP_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8428955078125	2	575.843813	1149.67307	0.070971	4.0868E-05	-0.37095	-0.00021361	-0.29998	-0.00017274	575.8430699173696	94.254	1.8902	94.254	93.348	95.238	0					261	163	3	0	0	0	0.33276	1	25162	25162		3.9444	1.8846	1	323260			6919	3333	3605	3605	9408	9408					0.10422436476983421
EIKLPTEMEG	10	Unmodified	_EIKLPTEMEG_					0	0	0		ENSG00000113272|ENST00000231198|THG1L	ENSG00000113272|ENST00000231198|THG1L	ENSG00000113272|ENST00000231198|THG1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.2689208984375	2	573.789189	1145.56383	0.11077	6.3561E-05	0.38378	0.00022021	0.49455	0.00028377	574.2915602342406	61.177	0.39054	61.177	61.022	61.413	0					20	13	2	0	0	0	0.27979	1	14972	14972		21.537	7.6309	1	1161400			6920	2486	3606	3606	9409	9409					-0.0031337504804014316
EIKLVLLQ	8	Unmodified	_EIKLVLLQ_					0	0	0			REV__nc|ENSG00000173809|Q587J7-2|TDRD12	REV__nc|ENSG00000173809|Q587J7-2|TDRD12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.33123779296875	2	478.312961	954.611368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.553	1	54.616	54.116	55.116	0.063202								0	0	0	0.3293	1	12964	12964		24.021	0.87215	1		+		6921	17804	3607	3607	9410	9410					0.13224692005132965
EIKMTKMYK	9	Unmodified	_EIKMTKMYK_					0	0	0		ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8130493164062	2	586.31432	1170.61409	0.16732	9.8105E-05	0.25122	0.00014729	0.41855	0.0002454	586.3142316280523	95.335	0.23547	95.418	95.321	95.557	0.082779					31	22	2	0	0	0	0.26068	1	25446	25446		3.2813	0.28607	1	166740			6922	1758	3608	3608	9411	9411					0.03560456076138507
EILAPLQNI	9	Unmodified	_EILAPLQNI_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7976989746094	2	505.797675	1009.5808	0.39694	0.00020077	-1.7582	-0.00088929	-1.3613	-0.00068852	505.7973501392296	72.659	2.0202	72.659	71.718	73.738	0					101	73	2	0	0	0	0.11461	1	18534	18534		36.127	1.7253	1	501890			6923	2287	3609	3609	9412	9412					0.07638913620087351
EILAPLQNI	9	Unmodified	_EILAPLQNI_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.79766845703125	2	505.797675	1009.5808	0.37803	0.00019121	-1.8348	-0.00092804	-1.4568	-0.00073683	505.79728831895204	72.614	2.0456	72.668	71.703	73.749	0.053833					97	74	2	0	0	0	0.07432	1	18515	18515		43.858	2.0187	1	541730			6924	2287	3609	3609	9413	9413					0.07638913620087351
EILAPLQNI	9	Unmodified	_EILAPLQNI_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.7977600097656	2	505.797675	1009.5808	0.44352	0.00022433	-1.46	-0.00073847	-1.0165	-0.00051414	505.7973588894914	72.695	1.4979	72.665	71.656	73.153	-0.029305					88	53	3	0	0	0	0.079752	1	18535	18535		41.84	0	1	520490			6925	2287	3609	3609	9414	9414					0.07638913620087351
EILEWEFL	8	Unmodified	_EILEWEFL_					0	0	0		ENST00000543813.1_1_15:101717595-101728206:-|nuORF;ENSG00000131873|ENST00000254190|CHSY1	ENST00000543813.1_1_15:101717595-101728206:-|nuORF	ENST00000543813.1_1_15:101717595-101728206:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3298950195312	2	539.776408	1077.53826	0.70135	0.00037857	-0.66589	-0.00035943	0.035457	1.9139E-05	539.7760776542358	83.071	0.58617	83.071	82.813	83.399	0					40	22	2	0	0	0	0.34247	1	21788	21788		8.5933	0.68312	1	113140			6926	3596	3610	3610	9415	9415					0.0025951849186185427
EILEWEFL	8	Unmodified	_EILEWEFL_					0	0	0		ENST00000543813.1_1_15:101717595-101728206:-|nuORF;ENSG00000131873|ENST00000254190|CHSY1	ENST00000543813.1_1_15:101717595-101728206:-|nuORF	ENST00000543813.1_1_15:101717595-101728206:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3297729492188	2	539.776408	1077.53826	0.69529	0.0003753	-0.66175	-0.0003572	0.033542	1.8105E-05	539.7759270535245	83.05	0.67011	83.029	82.672	83.342	-0.020584					38	26	2	0	0	0	0.34092	1	21712	21712		13.508	3.3245	1	145970			6927	3596	3610	3610	9416	9416					0.0025951849186185427
EILKQQQELL	10	Unmodified	_EILKQQQELL_					0	0	0		ENSG00000153989|ENST00000368494|NUS1;ENST00000401550.2_1_13:99262776-99262983:-|nuORF	ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.88232421875	2	621.358628	1240.7027	0.0058933	3.6618E-06	0.33406	0.00020757	0.33995	0.00021123	621.3587104790286	73.073	0.81958	73.127	72.843	73.663	0.053841					93	29	5	0	0	0	0.31555	1	18765	18765		7.1017	0	1	2044800			6928	5098	3611	3611	9417	9417					0.09197910911802865
EILLSAQAFDI	11	Unmodified	_EILLSAQAFDI_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENST00000496144.5_1_8:100515159-100589873:+|nuORF	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.8787536621094	3	407.223811	1218.6496	-0.39754	-0.00016189	0.32347	0.00013173	-0.074063	-3.016E-05	407.22394762275803	13.898	0.3001	13.794	13.633	13.933	-0.10466					24	10	3	0	0	0	0.32912	1	581	581		11.631	2.6551	1	115870			6929	3647	3612	3612	9418	9418					0.04902533129143194
EILRSKMTF	9	Unmodified	_EILRSKMTF_					0	0	0			REV__ENSG00000256087|ENST00000221315|ZNF432	REV__ENSG00000256087|ENST00000221315|ZNF432	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3289794921875	2	562.810259	1123.60597	0.41572	0.00023397	-2.4064	-0.0013544	-1.9907	-0.0011204	562.8084345244432	38.35	0.65173	38.441	38.183	38.834	0.090881					53	23	3	0	0	0	0.23784	1	8010	8010		19.257	3.4098	1	205310	+		6930	19249	3613	3613	9419	9419					0.04910645150994242
EILRSKMTF	9	Unmodified	_EILRSKMTF_					0	0	0			REV__ENSG00000256087|ENST00000221315|ZNF432	REV__ENSG00000256087|ENST00000221315|ZNF432	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	562.810259	1123.60597	0.096672	5.4408E-05	-2.7847	-0.0015673	-2.688	-0.0015128	562.8083288163726	38.332	0.81115	38.332	38.092	38.903	0	-0.087137	-3.1243E-05	NaN	19.257	39	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200230	+		6931	19249	3613	3613							0.04910645150994242
EILRSKMTF	9	Unmodified	_EILRSKMTF_					0	0	0			REV__ENSG00000256087|ENST00000221315|ZNF432	REV__ENSG00000256087|ENST00000221315|ZNF432	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	562.810259	1123.60597	0.28416	0.00015993	-3.0346	-0.0017079	-2.7504	-0.001548	562.8082236212341	38.387	0.71759	38.484	38.176	38.893	0.097527	0.065076	-0.0003125	NaN	19.257	39	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211910	+		6932	19249	3613	3613							0.04910645150994242
EIMEEMEV	8	Unmodified	_EIMEEMEV_					0	0	0			REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2637939453125	2	505.214469	1008.41438	0.44777	0.00022622	-1.1905	-0.00060147	-0.74275	-0.00037525	505.2136782123955	76.555	0.20305	76.524	76.422	76.625	-0.031487					9	6	2	0	0	0	0.34218	1	19710	19710		5.2307	0	1	88674	+		6933	14375	3614	3614	9420	9420					-0.08948643662267841
EIMEKLTRRDF	11	Unmodified	_EIMEKLTRRDF_					0	0	0		ENSG00000186017|ENST00000452939|ZNF566;nc|ENSG00000186017|Q969W8-2|ZNF566	ENSG00000186017|ENST00000452939|ZNF566	ENSG00000186017|ENST00000452939|ZNF566	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.77178955078125	3	479.922138	1436.74458	0.19628	9.42E-05	-2.5155	-0.0012073	-2.3193	-0.0011131	480.2554830199058	49.805	0.32732	49.805	49.626	49.953	0					16	11	3	0	0	0	0.32912	1	11504	11504		8.2864	2.4183	1	172800			6934	7581	3615	3615	9421	9421					0.04368143328656515
EIMNMMGVYAD	11	Unmodified	_EIMNMMGVYAD_					0	0	0		ENSG00000176774|ENST00000325250|MAGEB18	ENSG00000176774|ENST00000325250|MAGEB18	ENSG00000176774|ENST00000325250|MAGEB18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.3272094726562	2	637.266709	1272.51887	0.68353	0.00043559	-0.59229	-0.00037745	0.091234	5.814E-05	637.266488996151	63.633	0.56548	63.729	63.477	64.043	0.095722					30	19	2	0	0	0	0.32996	1	15733	15733		8.1555	1.9497	1	195950			6935	6943	3616	3616	9422	9422					-0.10649265177198686
EIPHKGAF	8	Unmodified	_EIPHKGAF_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7553405761719	2	449.742702	897.470852	0.30563	0.00013746	0.55065	0.00024765	0.85628	0.00038511	449.7428165332086	53.243	0.29289	53.243	53.121	53.414	0					13	10	2	0	0	0	0.39956	1	12571	12571		19.439	2.4967	1	126200			6936	2878	3617	3617	9423	9423					0.018015330715684286
EIPILIPLIC	10	Unmodified	_EIPILIPLIC_					0	0	0		ENST00000576723.5_1_17:7852320-7852825:+|nuORF	ENST00000576723.5_1_17:7852320-7852825:+|nuORF	ENST00000576723.5_1_17:7852320-7852825:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3434448242188	2	562.343403	1122.67225	0.26073	0.00014662	0.19112	0.00010748	0.45186	0.0002541	562.343553068934	80.466	2.1466	80.466	79.411	81.558	0					378	89	5	0	0	0	0.39745	1	20646	20646		3.9444	3.9444	1	16129000			6937	12051	3618	3618	9424	9424					0.11582460993076893
EIPKEEAPTVF	11	Unmodified	_EIPKEEAPTVF_					0	0	0			REV__ENSG00000113460|ENST00000336767|BRIX1	REV__ENSG00000113460|ENST00000336767|BRIX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.8599853515625	2	630.329536	1258.64452	0.36853	0.0002323	0.36924	0.00023274	0.73777	0.00046504	630.3295094771568	85.764	2.0783	85.848	84.958	87.036	0.084251					145	81	3	0	0	0	0.32996	1	22470	22470		4.897	0	1	566160	+		6938	14809	3619	3619	9425	9425					0.025542292665022615
EIPLHFRKVVW	11	Unmodified	_EIPLHFRKVVW_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.2782897949219	3	475.278473	1422.81359	0.37866	0.00017997	-0.27532	-0.00013085	0.10335	4.9119E-05	475.2782316305637	55.317	1.1796	55.298	54.869	56.048	-0.019081					135	43	4	0	0	0	0.46971	1	13111	13111		2.084	0.75432	1	2767500			6939	4065	3620	3620	9426	9426					0.11909595410543261
EIPPPFINP	9	Unmodified	_EIPPPFINP_					0	0	0		nc|ENSG00000173093|Q8NA47-2|CCDC63;ENSG00000173093|ENST00000308208|CCDC63	nc|ENSG00000173093|Q8NA47-2|CCDC63	nc|ENSG00000173093|Q8NA47-2|CCDC63	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2922973632812	2	512.279118	1022.54368	0.23588	0.00012084	-0.69298	-0.000355	-0.4571	-0.00023416	512.2787807827683	62.656	1.018	62.648	62.118	63.136	-0.0085564					90	37	3	0	0	0	0.21303	1	15515	15515		21.747	21.747	1	897470			6940	6691	3621	3621	9427	9427					0.03331242074318652
EIPPPPPPF	9	Unmodified	_EIPPPPPPF_					0	0	0			REV__ENST00000468083.1_1_7:143078664-143079645:+|nuORF	REV__ENST00000468083.1_1_7:143078664-143079645:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.9178466796875	2	495.768386	989.522219	0.47231	0.00023415	0.53411	0.0002648	1.0064	0.00049895	495.7685374958701	55.624	0.69928	55.605	55.379	56.078	-0.019077					37	25	2	0	0	0	0.19839	1	13411	13411		28.487	5.3384	1	664700	+		6941	16868	3622	3622	9428	9428					0.02703857045617042
EIPPPPPPF	9	Unmodified	_EIPPPPPPF_					0	0	0			REV__ENST00000468083.1_1_7:143078664-143079645:+|nuORF	REV__ENST00000468083.1_1_7:143078664-143079645:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	495.768386	989.522219	0.36657	0.00018173	0.73468	0.00036423	1.1012	0.00054596	495.76861792331596	55.334	0.58833	55.334	55.119	55.707	0	-0.10518	0.00015011	NaN	28.487	38	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608350	+		6942	16868	3622	3622							0.02703857045617042
EIPPPPPPF	9	Unmodified	_EIPPPPPPF_					0	0	0			REV__ENST00000468083.1_1_7:143078664-143079645:+|nuORF	REV__ENST00000468083.1_1_7:143078664-143079645:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	495.768386	989.522219	0.62743	0.00031106	0.36794	0.00018241	0.99537	0.00049347	495.7684142627382	55.308	0.59071	55.378	55.085	55.675	0.070885	-0.060503	-0.00021352	NaN	28.487	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	490910	+		6943	16868	3622	3622							0.02703857045617042
EIQAIFTQK	9	Unmodified	_EIQAIFTQK_					0	0	0		ENSG00000158828|ENST00000321556|PINK1	ENSG00000158828|ENST00000321556|PINK1	ENSG00000158828|ENST00000321556|PINK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8291625976562	2	539.300581	1076.58661	0.55671	0.00030024	2.1035	0.0011344	2.6602	0.0014347	539.3008559584697	44.177	0.37225	44.251	44.071	44.443	0.0742					31	13	3	0	0	0	0.19686	1	9780	9780		24.991	7.8781	1	843580			6944	5375	3623	3623	9429	9429					0.05138012131760661
EIQKPQRVV	9	Unmodified	_EIQKPQRVV_					0	0	0		nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.794921875	2	548.827298	1095.64004	0.058055	3.1862E-05	0.57545	0.00031582	0.6335	0.00034768	548.8275064876215	39.347	0.59155	39.347	39.104	39.695	0					45	21	3	0	0	0	0.2524	1	8382	8382		11.495	3.5846	1	465590			6945	6006	3624	3624	9430	9430					0.09604809634288358
EIQKPQRVV	9	Unmodified	_EIQKPQRVV_					0	0	0		nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7951049804688	2	548.827298	1095.64004	0.31323	0.00017191	0.22036	0.00012094	0.53359	0.00029285	548.8272745473427	39.26	0.55379	39.352	39.137	39.69	0.09267					42	19	3	0	0	0	0.24289	1	8332	8332		18.146	3.5647	1	360750			6946	6006	3624	3624	9431	9431					0.09604809634288358
EIQKPQRVV	9	Unmodified	_EIQKPQRVV_					0	0	0		nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7950439453125	2	548.827298	1095.64004	0.54987	0.00030178	0.017444	9.5736E-06	0.56731	0.00031136	548.8272520996543	39.215	0.49273	39.314	39.1	39.593	0.099407					36	17	3	0	0	0	0.23235	1	8314	8314		21.537	12.19	1	466610			6947	6006	3624	3624	9432	9432					0.09604809634288358
EIQQIAKRF	9	Unmodified	_EIQQIAKRF_					0	0	0			REV__ENSG00000274209|ENST00000620264|ANTXRL	REV__ENSG00000274209|ENST00000620264|ANTXRL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.2539672851562	2	566.827298	1131.64004	0.30109	0.00017067	0.83419	0.00047284	1.1353	0.0006435	566.8277637893776	46.086	1.339	46.086	45.393	46.732	0					104	48	3	0	0	0	0.25526	1	10144	10144		7.9102	1.187	1	1270500	+		6948	19324	3625	3625	9433	9433					0.0794880963428568
EIQSFVSYL	9	Unmodified	_EIQSFVSYL_					0	0	0			REV__ENSG00000091138|ENST00000340010|SLC26A3	REV__ENSG00000091138|ENST00000340010|SLC26A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8084716796875	2	543.279315	1084.54408	0.58856	0.00031975	0.80753	0.00043871	1.3961	0.00075847	543.2796205308027	81.231	0.96022	81.207	80.87	81.831	-0.02404					51	42	2	0	0	0	0.24848	1	21199	21199		13.906	0.86358	1	150640	+		6949	14060	3626	3626	9434	9434					0.005186170035358373
EIRDRMWLK	9	Unmodified	_EIRDRMWLK_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.9161682128906	3	416.229014	1245.66521	-0.49397	-0.0002056	-1.9202	-0.00079925	-2.4142	-0.0010049	416.2281995370463	35.48	0.40203	35.48	35.118	35.52	0					19	14	2	0	0	0	0.25527	1	7079	7079		9.544	0.3002	1	185430			6950	2124	3627	3627	9435	9435					0.05220541165181203
EIRHLFQEKK	10	Unmodified	_EIRHLFQEKK_					0	0	0		nc|ENSG00000128309|P25325|MPST;ENSG00000128309|ENST00000429360|MPST	nc|ENSG00000128309|P25325|MPST	nc|ENSG00000128309|P25325|MPST	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.2737121582031	3	443.254216	1326.74082	0.34219	0.00015168	2.9901	0.0013254	3.3323	0.001477	443.2560495140882	35.897	0.76061	35.897	35.719	36.479	0					33	27	2	0	0	0	0.31969	1	7198	7198		5.7834	3.1522	1	198090			6951	3361	3628	3628	9436	9436					0.09051841617110767
EIRHLFQEKK	10	Unmodified	_EIRHLFQEKK_					0	0	0		nc|ENSG00000128309|P25325|MPST;ENSG00000128309|ENST00000429360|MPST	nc|ENSG00000128309|P25325|MPST	nc|ENSG00000128309|P25325|MPST	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	443.254216	1326.74082	0.31477	0.00013952	1.948	0.00086347	2.2628	0.001003	443.25514751253456	35.845	0.49559	35.932	35.645	36.14	0.086246	0.049775	0.00019045	NaN	1.5923	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192660			6952	3361	3628	3628							0.09051841617110767
EIRMAQERLDL	11	Unmodified	_EIRMAQERLDL_					0	0	0		ENSG00000182963|ENST00000592524|GJC1	ENSG00000182963|ENST00000592524|GJC1	ENSG00000182963|ENST00000592524|GJC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.5784912109375	3	458.578371	1372.71328	0.12429	5.6998E-05	-0.56267	-0.00025803	-0.43837	-0.00020103	458.57822711646634	35.585	0.60734	35.585	35.354	35.962	0					53	21	3	0	0	0	0.36161	1	7140	7140		16.275	2.0564	1	631440			6953	7337	3629	3629	9437	9437					0.04183570294594574
EIRMAQERLDL	11	Unmodified	_EIRMAQERLDL_					0	0	0		ENSG00000182963|ENST00000592524|GJC1	ENSG00000182963|ENST00000592524|GJC1	ENSG00000182963|ENST00000592524|GJC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.5784606933594	3	458.578371	1372.71328	0.1327	6.0855E-05	-0.56078	-0.00025716	-0.42808	-0.00019631	458.5782388702099	35.553	0.62719	35.635	35.353	35.98	0.082355					46	22	3	0	0	0	0.32951	1	7122	7122		11.065	0.53781	1	653450			6954	7337	3629	3629	9438	9438					0.04183570294594574
EIRTITVV	8	Unmodified	_EIRTITVV_					0	0	0		ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.24542236328125	2	465.784567	929.554582	0.028968	1.3493E-05	-0.1567	-7.2988E-05	-0.12773	-5.9495E-05	465.7844310707643	32.843	0.49606	32.898	32.675	33.171	0.055309					30	17	3	0	0	0	0.34167	1	6314	6314		11.64	0.14559	1	188050			6955	1283	3630	3630	9439	9439					0.08698644448622872
EISDLEEIGF	10	Unmodified	_EISDLEEIGF_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3;nc|ENSG00000080200|Q68DQ2-1|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8431396484375	2	576.276969	1150.53938	0.57704	0.00033253	-0.73127	-0.00042142	-0.15424	-8.8883E-05	576.2768187233771	84.698	0.5528	84.779	84.522	85.075	0.080887					34	21	2	0	0	0	0.3156	1	22206	22206		3.5965	0	1	216240			6956	1150	3631	3631	9440	9440					-0.029863119298852325
EISFPEPHLF	10	Unmodified	_EISFPEPHLF_					0	0	0			REV__nc|ENSG00000197142|Q9ULC5-4|ACSL5	REV__nc|ENSG00000197142|Q9ULC5-4|ACSL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.8899230957031	3	405.873001	1214.59717	0.0054298	2.2038E-06	-0.9297	-0.00037734	-0.92427	-0.00037514	405.87227774964236	43.104	1.6239	43.186	42.536	44.16	0.081566					77	59	2	0	0	0	0.31746	1	9490	9490		6.1918	0.40842	1	355790	+		6957	18714	3632	3632	9441	9441					-0.0015400521381252474
EISGYIIER	9	Unmodified	_EISGYIIER_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2909545898438	2	540.290214	1078.56587	0.80384	0.00043431	0.19693	0.0001064	1.0008	0.00054071	540.2902150735562	56.432	0.8041	56.432	56.158	56.962	0					69	29	3	0	0	0	0.0024096	2	13537	13537;13587		106.94	28.212	1	2417400			6958	5186	3633	3633	9442;9443	9442					0.02973421752108152
EISGYIIER	9	Unmodified	_EISGYIIER_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2906494140625	2	540.290214	1078.56587	0.91649	0.00049517	0.21518	0.00011626	1.1317	0.00061143	540.2901972463914	56.35	0.92351	56.428	56.117	57.04	0.078674					76	34	3	0	0	0	0.0046246	2	13497	13497;13544		89.401	20.296	1	2521700			6959	5186	3633	3633	9444;9445	9444					0.02973421752108152
EISGYIIER	9	Unmodified	_EISGYIIER_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.818359375	2	540.290214	1078.56587	0.41503	0.00022423	-3.1724	-0.001714	-2.7574	-0.0014898	540.7894812757216	75.899	0.45519	75.953	75.537	75.992	0.053421					17	16	2	0	0	0	0.24688	1	19411	19411		10.074	0	1	135510			6960	5186	3633	3633	9446	9446					0.02973421752108152
EISGYIIER	9	Unmodified	_EISGYIIER_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2908935546875	2	540.290214	1078.56587	1.2244	0.00066151	0.31292	0.00016907	1.5373	0.00083057	540.2901962121263	56.574	0.84858	56.555	56.267	57.115	-0.019077					63	30	4	0	0	0	0.0046246	1	13595	13595		89.401	10.673	1	2347100			6961	5186	3633	3633	9447	9447					0.02973421752108152
EISGYIIER	9	Unmodified	_EISGYIIER_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3034057617188	2	540.290214	1078.56587	0.40254	0.00021749	1.4612	0.00078946	1.8637	0.0010069	540.2911315298845	57.608	0.75692	57.591	57.117	57.874	-0.0172					49	27	2	0	0	0	0.18803	1	13993	13993		25.399	1.3787	1	1005100			6962	5186	3633	3633	9448	9448					0.02973421752108152
EISYLKKLK	9	Unmodified	_EISYLKKLK_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2850952148438	2	561.350074	1120.6856	0.71578	0.00040181	-0.51816	-0.00029087	0.19762	0.00011094	561.3496687778921	50.552	0.57579	50.552	50.296	50.872	0					47	20	3	0	0	0	0.25323	1	11772	11772		6.2058	0.47393	1	471560			6963	4547	3634	3634	9449	9449					0.13008035096640924
EITPFSYI	8	Unmodified	_EITPFSYI_					0	0	0		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8001708984375	2	485.250026	968.485499	0.34501	0.00016741	-0.60267	-0.00029245	-0.25766	-0.00012503	485.24948327265537	79.776	0.45396	79.747	79.521	79.975	-0.028931					25	16	2	0	0	0	0.32435	1	20716	20716		23.148	3.7094	1	84140			6964	6397	3635	3635	9450	9450					-4.395709538584924E-06
EITQLAGAVK	10	Unmodified	_EITQLAGAVK_					0	0	0			REV__nc|ENSG00000160688|Q8NFF5-3|FLAD1	REV__nc|ENSG00000160688|Q8NFF5-3|FLAD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2791137695312	2	515.300581	1028.58661	0.56067	0.00028891	-2.0994	-0.0010818	-1.5387	-0.00079289	515.300471570606	32.12	0.68199	32.12	32.01	32.692	0					58	24	3	0	0	0	0.28645	1	6076	6076		27.223	4.487	1	275870	+		6965	16911	3636	3636	9451	9451					0.07346012131756652
EITVFNEFF	9	Unmodified	_EITVFNEFF_					0	0	0			REV__ENSG00000174373|ENST00000680220|RALGAPA1	REV__ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.2803955078125	2	573.279315	1144.54408	0.42702	0.0002448	1.6361	0.00093796	2.0632	0.0011828	573.2794513098637	89.213	0.79337	89.304	88.97	89.764	0.090561					106	46	3	0	0	0	0.29176	1	23704	23704		10.074	0.6908	1	336020	+		6966	17829	3637	3637	9452	9452					-0.022413829964762044
EITYSWKF	8	Unmodified	_EITYSWKF_					0	0	0		ENST00000573151.5_1_19:52206422-52207434:+|nuORF;ENST00000573266.5_1_19:52204948-52207434:+|nuORF;ENST00000576093.5_1_19:52197750-52207734:+|nuORF;ENSG00000182310|ENST00000637797|SPACA6	ENST00000573151.5_1_19:52206422-52207434:+|nuORF	ENST00000573151.5_1_19:52206422-52207434:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7559814453125	2	537.26875	1072.52295	0.71941	0.00038652	-1.7555	-0.0009432	-1.0361	-0.00055668	537.2677738926677	79.317	0.69842	79.288	78.845	79.544	-0.028931					34	29	2	0	0	0	0.3366	1	20482	20482		18.135	0	1	87723			6967	7287	3638	3638	9453	9453					-0.010413483053298478
EIVAKTYQLL	10	Unmodified	_EIVAKTYQLL_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3441162109375	2	589.344989	1176.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.97	1	80.943	80.443	81.443	-0.026825								0	0	0	0.36922	1	21053	21053		6.7232	0.99131	1				6968	2029	3639	3639	9454	9454					0.09415427371436635
EIVFYKVI	8	Unmodified	_EIVFYKVI_					0	0	0		nc|ENSG00000133256|P35913-3|PDE6B;PDE6B|p.E631Pfs*50|1|0.1|ENSG00000133256|chr4:663156-663169|TGGAGTTTGGGAAG/-|frameshift_variant;nc|ENSG00000133256|P35913-2|PDE6B;ENSG00000133256|ENST00000496514|PDE6B	nc|ENSG00000133256|P35913-3|PDE6B	nc|ENSG00000133256|P35913-3|PDE6B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7995300292969	2	505.799686	1009.58482	0.52669	0.0002664	-0.38386	-0.00019415	0.14283	7.2246E-05	505.7996056069444	84.406	1.7833	84.483	84.097	85.881	0.077095					196	69	5	0	0	0	0.4354	1	22404	22404		10.824	2.2306	1	12101000			6969	3703	3640	3640	9455	9455					0.080410031138058
EIVIKVKPK	9	Unmodified	_EIVIKVKPK_					0	0	0		nc|ENSG00000055957|P19827-2|ITIH1;ENSG00000055957|ENST00000273283|ITIH1	nc|ENSG00000055957|P19827-2|ITIH1	nc|ENSG00000055957|P19827-2|ITIH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.805908203125	2	527.35516	1052.69577	0.68212	0.00035972	-0.56205	-0.0002964	0.12007	6.3319E-05	527.3548443149699	40.142	0.36876	40.235	40.051	40.42	0.09267					16	12	2	0	0	0	0.25879	1	8493	8493		2.0598	0.21551	1	91085			6970	709	3641	3641	9456	9456					0.17152642821906738
EIVNRVQNP	9	Unmodified	_EIVNRVQNP_					0	0	0		ENSG00000164463|ENST00000296953|CREBRF;nc|ENSG00000164463|Q8IUR6-3|CREBRF;ENST00000520464.1_1_5:172537514-172550222:+|nuORF	ENSG00000164463|ENST00000296953|CREBRF	ENSG00000164463|ENST00000296953|CREBRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.322021484375	2	534.793455	1067.57236	0.068095	3.6417E-05	0.32495	0.00017378	0.39304	0.0002102	534.7933930978178	25.039	0.44024	25.008	24.796	25.237	-0.03141					38	14	4	0	0	0	0.26031	1	3993	3993		3.5965	0.60125	1	121420			6971	5846	3642	3642	9457	9457					0.04127359703466027
EIYRKPIVI	9	Unmodified	_EIYRKPIVI_					0	0	0		ENSG00000233670|ENST00000580256|PIRT	ENSG00000233670|ENST00000580256|PIRT	ENSG00000233670|ENST00000580256|PIRT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.311767578125	2	565.850242	1129.68593	0.49435	0.00027973	-0.60272	-0.00034105	-0.10837	-6.132E-05	565.8501232500982	48.061	0.38765	48.104	47.957	48.344	0.043324					20	14	2	0	0	0	0.24913	1	10949	10949		4.3292	0	1	346250			6972	8481	3643	3643	9458	9458					0.126274548164929
EIYSILPPS	9	Unmodified	_EIYSILPPS_					0	0	0			REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.30609130859375	2	509.776408	1017.53826	0.0046655	2.3784E-06	2.3881	0.0012174	2.3927	0.0012198	510.2789949746073	12.204	0.14108	12.107	12.037	12.178	-0.096607					7	5	2	0	0	0	0.25622	1	52	52		7.2892	0	1	15982	+		6973	16723	3644	3644	9459	9459					0.030195184918625273
EKAGTSDLPR	10	Unmodified	_EKAGTSDLPR_					0	0	0		ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.3212890625	2	537.28292	1072.55129	-0.0064504	-3.4657E-06	0.86798	0.00046635	0.86153	0.00046289	537.2833953341923	34.183	0.66404	34.249	34.012	34.676	0.06636					33	23	2	0	0	0	0.31143	1	6808	6808		12.241	1.4167	1	334810			6974	4740	3645	3645	9460	9460					0.01791349603922754
EKALRDKKG	9	Unmodified	_EKALRDKKG_					0	0	0		nc|ENSG00000068308|Q96G74-2|OTUD5;nc|ENSG00000068308|Q96G74-3|OTUD5;ENSG00000068308|ENST00000376488|OTUD5;nc|ENSG00000068308|Q96G74|OTUD5	nc|ENSG00000068308|Q96G74-2|OTUD5	nc|ENSG00000068308|Q96G74-2|OTUD5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3036499023438	2	522.811648	1043.60874	-0.0035954	-1.8797E-06	0.19554	0.00010223	0.19195	0.00010035	522.8117187075633	12.377	0.41401	12.309	12.196	12.61	-0.06806					19	13	2	0	0	0	0.25431	1	74	74		9.3831	3.1773	1	53843			6975	879	3646	3646	9461	9461					0.08868236600164892
EKCFNLRN	8	Unmodified	_EKCFNLRN_					0	0	0		ENSG00000153060|ENST00000283025|TEKT5	ENSG00000153060|ENST00000283025|TEKT5	ENSG00000153060|ENST00000283025|TEKT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2556762695312	2	512.255651	1022.49675	0.47985	0.00024581	0.33591	0.00017207	0.81576	0.00041788	512.2557120484075	41.551	1.4603	41.648	41.177	42.638	0.096626					149	55	4	0	0	0	0.42371	1	8935	8935		14.838	5.4551	1	14181000			6976	5055	3647	3647	9462	9462					-0.013599407484548465
EKCVWTVV	8	Unmodified	_EKCVWTVV_					0	0	0			REV__ENST00000503670.5_1_6:30854463-30854742:+|nuORF	REV__ENST00000503670.5_1_6:30854463-30854742:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.25189208984375	2	482.252046	962.489538	0.27029	0.00013035	0.079772	3.847E-05	0.35007	0.00016882	482.2519285055108	57.881	0.7013	57.967	57.659	58.36	0.085621					42	25	2	0	0	0	0.39068	1	14000	14000		20.454	1.0146	1	280280	+		6977	21725	3648	3648	9463	9463					0.006793266511181173
EKCVWTVV	8	Unmodified	_EKCVWTVV_					0	0	0			REV__ENST00000503670.5_1_6:30854463-30854742:+|nuORF	REV__ENST00000503670.5_1_6:30854463-30854742:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	482.252046	962.489538	0.20173	9.7283E-05	-0.10631	-5.1268E-05	0.095415	4.6014E-05	482.2518306847453	58.023	0.72028	58.023	57.693	58.413	0	0.029108	-0.00021663	NaN	20.454	41	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254830	+		6978	21725	3648	3648							0.006793266511181173
EKCVWTVV	8	Unmodified	_EKCVWTVV_					0	0	0			REV__ENST00000503670.5_1_6:30854463-30854742:+|nuORF	REV__ENST00000503670.5_1_6:30854463-30854742:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	482.252046	962.489538	0.27029	0.00013035	0.079772	3.847E-05	0.35007	0.00016882	482.2519285055108	57.881	0.7013	57.967	57.659	58.36	0.085621	-0.026658	-3.7151E-05	NaN	20.454	42	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280280	+		6979	21725	3648	3648							0.006793266511181173
EKCVWTVV	8	Unmodified	_EKCVWTVV_					0	0	0			REV__ENST00000503670.5_1_6:30854463-30854742:+|nuORF	REV__ENST00000503670.5_1_6:30854463-30854742:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	482.252046	962.489538	0.39039	0.00018826	0.43588	0.0002102	0.82627	0.00039847	482.25189797581476	58.008	0.61074	57.991	57.69	58.3	-0.0172	-0.0024495	0.00030632	NaN	20.454	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318250	+		6980	21725	3648	3648							0.006793266511181173
EKDHSFCRR	9	Unmodified	_EKDHSFCRR_					0	0	0		ENST00000420888.1_1_7:84157478-84157526:-|nuORF	ENST00000420888.1_1_7:84157478-84157526:-|nuORF	ENST00000420888.1_1_7:84157478-84157526:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.3001708984375	2	589.280189	1176.54582	0.23526	0.00013864	-0.39748	-0.00023423	-0.16222	-9.5592E-05	589.2799681656558	48.928	1.0773	48.96	48.71	49.787	0.032043					120	38	5	0	0	0	0.23007	1	11345	11345		19.257	3.1079	1	4339500			6981	10366	3649	3649	9464	9464					-0.035386524595196533
EKDILVLPLDL	11	Unmodified	_EKDILVLPLDL_					0	0	0		ENST00000556502.1_1_14:60619584-60632027:-|nuORF;nc|ENSG00000100612|Q9Y394-2|DHRS7;ENSG00000100612|ENST00000557185|DHRS7	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3778686523438	2	634.379029	1266.7435	0.22831	0.00014483	-0.81045	-0.00051413	-0.58214	-0.0003693	634.3786634218038	105.99	0.38932	105.98	105.81	106.2	-0.0027847					79	57	3	0	0	0	0.46655	2	28032	28032;28055		2.4985	1.0166	1	157090			6982	1616	3650	3650	9465;9466	9465					0.12080252231430677
EKDILVLPLDL	11	Unmodified	_EKDILVLPLDL_					0	0	0		ENST00000556502.1_1_14:60619584-60632027:-|nuORF;nc|ENSG00000100612|Q9Y394-2|DHRS7;ENSG00000100612|ENST00000557185|DHRS7	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.379150390625	2	634.379029	1266.7435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.8	1	104.81	104.31	105.31	0.0018463								0	0	0	0.37609	1	27815	27815		2.4985	0	1				6983	1616	3650	3650	9467	9467					0.12080252231430677
EKDILVLPLDL	11	Unmodified	_EKDILVLPLDL_					0	0	0		ENST00000556502.1_1_14:60619584-60632027:-|nuORF;nc|ENSG00000100612|Q9Y394-2|DHRS7;ENSG00000100612|ENST00000557185|DHRS7	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3779296875	2	634.379029	1266.7435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.76	1	105.76	105.26	106.26	-0.0027847								0	0	0	0.37609	1	28007	28007		2.4985	0	1				6984	1616	3650	3650	9468	9468					0.12080252231430677
EKDKKAVK	8	Unmodified	_EKDKKAVK_					0	0	0		nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4	nc|ENSG00000058668|P23634|ATP2B4	nc|ENSG00000058668|P23634|ATP2B4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.3079833984375	2	473.290017	944.565481	-0.058277	-2.7582E-05	-0.12295	-5.8189E-05	-0.18122	-8.5771E-05	473.28989098604427	12.204	0.39004	12.108	11.905	12.295	-0.096607					47	16	4	0	0	0	0.43043	1	18	18		12.532	1.7076	1	390880			6985	735	3651	3651	9469	9469					0.09098046822896322
EKDLGTRAP	9	Unmodified	_EKDLGTRAP_					0	0	0		ENST00000601336.5_1_19:41770758-41770881:+|nuORF	ENST00000601336.5_1_19:41770758-41770881:+|nuORF	ENST00000601336.5_1_19:41770758-41770881:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.29315185546875	2	493.766906	985.519259	0.18494	9.1316E-05	-0.083372	-4.1166E-05	0.10157	5.015E-05	493.76691361943574	19.143	0.4064	19.087	18.931	19.337	-0.055693					18	13	2	0	0	0	0.25123	1	2195	2195		12.241	1.4167	1	52711			6986	12258	3652	3652	9470	9470					0.025919819208070294
EKDVSHLR	8	Unmodified	_EKDVSHLR_					0	0	0		ENSG00000198173|ENST00000358047|FAM47C	ENSG00000198173|ENST00000358047|FAM47C	ENSG00000198173|ENST00000358047|FAM47C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.28656005859375	2	492.267073	982.519593	0.39833	0.00019609	0.010375	5.1073E-06	0.40871	0.00020119	492.26704786462346	21.886	1.2179	21.785	21.338	22.556	-0.10034					108	44	4	0	0	0	0.41758	1	3077	3077		16.942	0	1	1562600			6987	8046	3653	3653	9471	9471					0.02763401640675056
EKEALKQEFL	10	Unmodified	_EKEALKQEFL_					0	0	0		ENSG00000133665|ENST00000256039|DYDC2	ENSG00000133665|ENST00000256039|DYDC2	ENSG00000133665|ENST00000256039|DYDC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.7838439941406	3	412.227444	1233.6605	0.90185	0.00037177	0.96113	0.0003962	1.863	0.00076797	412.5618796825424	50.374	0.2835	50.419	50.292	50.576	0.044891					12	9	2	0	0	0	0.31658	1	11717	11717		12.228	4.7505	1	101860			6988	3723	3654	3654	9472	9472					0.05301935503416644
EKEKASWRAE	10	Unmodified	_EKEKASWRAE_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.904296875	3	411.878926	1232.61495	-0.34098	-0.00014044	-1.3966	-0.00057523	-1.7376	-0.00071567	412.21323905906996	14.925	0.39926	14.925	14.701	15.1	0					18	13	2	0	0	0	0.32072	1	895	895		1.4551	0	1	39908			6989	2134	3655	3655	9473	9473					0.007947100410547137
EKEKHELG	8	Unmodified	_EKEKHELG_					0	0	0		ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7743835449219	2	485.253631	968.49271	-0.14057	-6.8213E-05	0.83753	0.00040642	0.69696	0.0003382	485.254345274772	13.888	0.21502	13.783	13.658	13.873	-0.10466					13	7	2	0	0	0	0.34367	1	552	552		4.3292	0	1	18743			6990	8322	3656	3656	9474	9474					0.0072029302948521945
EKEREDGKE	9	Unmodified	_EKEREDGKE_					0	0	0		ENSG00000198157|ENST00000358130|HMGN5	ENSG00000198157|ENST00000358130|HMGN5	ENSG00000198157|ENST00000358130|HMGN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.7469482421875	2	560.267467	1118.52038	0.51127	0.00028645	2.295	0.0012858	2.8062	0.0015722	560.2702201032004	85.637	0.55248	85.721	85.311	85.863	0.084251					22	20	2	0	0	0	0.25843	1	22510	22510		5.7319	0.97584	1	79956			6991	8041	3657	3657	9475	9475					-0.034138485009407304
EKERHVSIQ	9	Unmodified	_EKERHVSIQ_					0	0	0		ENSG00000080371|ENST00000261263|RAB21	ENSG00000080371|ENST00000261263|RAB21	ENSG00000080371|ENST00000261263|RAB21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.2588500976562	2	563.304187	1124.59382	0.17141	9.6554E-05	-0.49823	-0.00028065	-0.32682	-0.0001841	563.3037398067027	17.598	0.40199	17.481	17.355	17.757	-0.11739					18	13	2	0	0	0	0.26145	1	1645	1645		2.0598	0.40713	1	38396			6992	1154	3658	3658	9476	9476					0.03650744732203748
EKERHVSIQ	9	Unmodified	_EKERHVSIQ_					0	0	0		ENSG00000080371|ENST00000261263|RAB21	ENSG00000080371|ENST00000261263|RAB21	ENSG00000080371|ENST00000261263|RAB21	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.304187	1124.59382	0.24083	0.00013566	-0.43212	-0.00024341	-0.19129	-0.00010775	563.3036418399851	17.406	0.39322	17.406	17.296	17.69	0	-0.062031	0.00038013	NaN	2.0598	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45037			6993	1154	3658	3658							0.03650744732203748
EKERRLEEQK	10	Unmodified	_EKERRLEEQK_					0	0	0			REV__ENST00000477679.1_1_1:6511829-6520203:+|nuORF	REV__ENST00000477679.1_1_1:6511829-6520203:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.5990905761719	3	448.912519	1343.71573	0.24698	0.00011087	0.72536	0.00032562	0.97233	0.00043649	448.9128864716479	44.383	0.94296	44.383	43.741	44.684	0					65	34	2	0	0	0	0.31746	1	9745	9745		7.0371	0	1	439750	+		6994	18483	3659	3659	9477	9477					0.05761742023901206
EKERTFSF	8	Unmodified	_EKERTFSF_					0	0	0		ENSG00000162302|ENST00000334205|RPS6KA4;nc|ENSG00000162302|O75676-2|RPS6KA4;ENST00000532885.5_1_11:64128013-64135652:+|nuORF	ENSG00000162302|ENST00000334205|RPS6KA4	ENSG00000162302|ENST00000334205|RPS6KA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7931518554688	2	522.261456	1042.50836	0.25721	0.00013433	3.6316	0.0018967	3.8888	0.002031	522.2631155394822	15.839	0.30151	15.839	15.679	15.981	0					13	10	2	0	0	0	0.34353	1	1122	1122		4.756	0.81161	1	20411			6995	5558	3660	3660	9478	9478					-0.011194204534604069
EKERTFSF	8	Unmodified	_EKERTFSF_					0	0	0		ENSG00000162302|ENST00000334205|RPS6KA4;nc|ENSG00000162302|O75676-2|RPS6KA4;ENST00000532885.5_1_11:64128013-64135652:+|nuORF	ENSG00000162302|ENST00000334205|RPS6KA4	ENSG00000162302|ENST00000334205|RPS6KA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.793212890625	2	522.261456	1042.50836	0.2019	0.00010544	2.5802	0.0013475	2.7821	0.001453	522.263212512136	15.982	0.30181	15.868	15.718	16.02	-0.11434					16	9	2	0	0	0	0.34414	1	1153	1153		2.0598	0.21551	1	34080			6996	5558	3660	3660	9479	9479					-0.011194204534604069
EKETSVSK	8	Unmodified	_EKETSVSK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1;nc|ENSG00000164985|O75475-3|PSIP1;nc|ENSG00000164985|O75475-2|PSIP1;ENST00000422292.2_1_9:15055292-15055805:+|nuORF;ENST00000487363.5_1_9:15485934-15510186:-|nuORF	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.24041748046875	2	454.24019	906.465826	0.17784	8.0784E-05	0.58099	0.00026391	0.75883	0.00034469	454.2403516777265	20.293	1.0075	20.293	20.073	21.08	0					77	36	3	0	0	0	0.026582	2	2497	2497;2551		93.166	12.49	1	823330			6997	5913	3661	3661	9480;9481	9480					0.008851844182913737
EKETSVSK	8	Unmodified	_EKETSVSK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1;nc|ENSG00000164985|O75475-3|PSIP1;nc|ENSG00000164985|O75475-2|PSIP1;ENST00000422292.2_1_9:15055292-15055805:+|nuORF;ENST00000487363.5_1_9:15485934-15510186:-|nuORF	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.240478515625	2	454.24019	906.465826	0.40474	0.00018385	0.325	0.00014763	0.72975	0.00033148	454.24025122123805	20.511	1.0748	20.401	20.046	21.121	-0.11003					62	38	2	0	0	0	0.026582	2	2554	2554;2607		93.166	12.49	1	849350			6998	5913	3661	3661	9482;9483	9482					0.008851844182913737
EKETSVSK	8	Unmodified	_EKETSVSK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1;nc|ENSG00000164985|O75475-3|PSIP1;nc|ENSG00000164985|O75475-2|PSIP1;ENST00000422292.2_1_9:15055292-15055805:+|nuORF;ENST00000487363.5_1_9:15485934-15510186:-|nuORF	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2404479980469	2	454.24019	906.465826	0.46885	0.00021297	0.30722	0.00013955	0.77607	0.00035252	454.2402281178723	20.413	0.96642	20.36	19.981	20.947	-0.05291					81	34	3	0	0	0	0.039031	2	2536	2536;2585		83.429	11.721	1	750080			6999	5913	3661	3661	9484;9485	9484					0.008851844182913737
EKFEEELLELH	11	Unmodified	_EKFEEELLELH_					0	0	0		ENST00000478423.6_1_1:5965468-6029316:-|nuORF;nc|ENSG00000131697|O75161-2|NPHP4;ENSG00000131697|ENST00000378156|NPHP4	ENST00000478423.6_1_1:5965468-6029316:-|nuORF	ENST00000478423.6_1_1:5965468-6029316:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.79791259765625	3	472.57328	1414.69801	-0.021706	-1.0258E-05	-0.52984	-0.00025039	-0.55154	-0.00026064	472.5724123020966	25.665	0.45142	25.643	25.416	25.867	-0.022238					42	15	5	0	0	0	0.32824	1	4081	4081		12.856	2.5407	1	83259			7000	3582	3662	3662	9486	9486					0.007249819783964995
EKFRDHNRKI	10	Unmodified	_EKFRDHNRKI_					0	0	0			REV__ENSG00000163378|ENST00000383701|EOGT	REV__ENSG00000163378|ENST00000383701|EOGT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.5526428222656	3	448.249465	1341.72657	0.047692	2.1378E-05	-2.4412	-0.0010943	-2.3935	-0.0010729	448.58289800534345	29.442	0.60592	29.455	29.192	29.798	0.013474					30	20	2	0	0	0	0.31899	1	5283	5283		7.4771	1.2852	1	134520	+		7001	17049	3663	3663	9487	9487					0.06937189188829507
EKHLPRKSDK	10	Unmodified	_EKHLPRKSDK_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.23809814453125	3	413.238566	1236.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.991	1	67.974	67.474	68.474	-0.016296								0	0	0	0.37789	1	17091	17091		3.0723	1.33	1				7002	1428	3664	3664	9488	9488					0.08498982065975724
EKHLPRKSDK	10	Unmodified	_EKHLPRKSDK_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2380065917969	3	413.238566	1236.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.147	1	68.128	67.628	68.628	-0.019157								0	0	0	0.37789	1	17140	17140		3.0723	1.33	1				7003	1428	3664	3664	9489	9489					0.08498982065975724
EKHLPRKSDK	10	Unmodified	_EKHLPRKSDK_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.23797607421875	3	413.238566	1236.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.315	1	68.296	67.796	68.796	-0.019157								0	0	0	0.37789	1	17192	17192		3.0723	0.78949	1				7004	1428	3664	3664	9490	9490					0.08498982065975724
EKHVWRRIFK	10	Unmodified	_EKHVWRRIFK_					0	0	0			REV__ENSG00000134452|ENST00000362091|FBH1	REV__ENSG00000134452|ENST00000362091|FBH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.6238098144531	3	466.942084	1397.80442	-0.39131	-0.00018272	1.6944	0.00079119	1.3031	0.00060847	466.9430107006909	101.6	0.12338	101.6	101.51	101.63	0					19	15	2	0	0	0	0.32051	1	27093	27093		1.9064	0	1	59052	+		7005	15676	3665	3665	9491	9491					0.12143246844880196
EKHVWRRIFK	10	Unmodified	_EKHVWRRIFK_					0	0	0			REV__ENSG00000134452|ENST00000362091|FBH1	REV__ENSG00000134452|ENST00000362091|FBH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.6238708496094	3	466.942084	1397.80442	0.14994	7.0016E-05	0.74558	0.00034814	0.89552	0.00041816	466.9425885495192	101.55	0.1088	101.54	101.5	101.61	-0.0054703					13	13	2	0	0	0	0.32051	1	27110	27110		1.9064	1.4981	1	41066	+		7006	15676	3665	3665	9492	9492					0.12143246844880196
EKIENVKQHA	10	Unmodified	_EKIENVKQHA_					0	0	0			REV__nc|ENSG00000135205|Q8IYE0-2|CCDC146	REV__nc|ENSG00000135205|Q8IYE0-2|CCDC146	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.324951171875	2	598.325119	1194.63569	0.20441	0.0001223	-0.22484	-0.00013453	-0.020432	-1.2225E-05	598.3252351177915	96.59	0.5433	96.59	96.273	96.816	0					126	51	4	0	0	0	0.39227	1	25774	25774		4.897	1.3005	1	164250	+		7007	15726	3666	3666	9493	9493					0.046153004207099
EKIFEKINNL	10	Unmodified	_EKIFEKINNL_					0	0	0			REV__ZNF432|p.E250Nfs*23|1|0.15|ENSG00000256087|chr19:52034931-52034931|C/-|frameshift_variant	REV__ZNF432|p.E250Nfs*23|1|0.15|ENSG00000256087|chr19:52034931-52034931|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.1827697753906	3	416.571322	1246.69214	-0.1286	-5.3573E-05	2.655	0.001106	2.5264	0.0010524	416.5727569093788	25.322	0.29242	25.322	25.153	25.445	0					17	9	3	0	0	0	0.3213	1	4022	4022		1.9064	1.6374	1	23388	+		7008	23361	3667	3667	9494	9494					0.0786592825736534
EKIFKTAGFVK	11	Unmodified	_EKIFKTAGFVK_					0	0	0		ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	ENSG00000133661|ENST00000372292|SFTPD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.8929443359375	2	634.374081	1266.73361	0.013866	8.7965E-06	0.13554	8.5981E-05	0.1494	9.4777E-05	634.375409068473	97.653	0.050636	97.653	97.606	97.656	0					5	3	2	0	0	0	0.46475	1	26116	26116		2.7352	0.23671	1	31081			7009	3722	3668	3668	9495	9495					0.11091109016660994
EKIICLTRVF	10	Unmodified	_EKIICLTRVF_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.3564453125	2	611.354834	1220.69511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.166	1	88.255	87.755	88.755	0.089195								0	0	0	0.36832	1	23273	23273		7.1017	0.37856	1				7010	7673	3669	3669	9496	9496					0.09359480110515506
EKILLNPTELL	11	Unmodified	_EKILLNPTELL_					0	0	0			REV__ENST00000373839.7_1_1:28823314-28823584:+|nuORF	REV__ENST00000373839.7_1_1:28823314-28823584:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8826293945312	2	641.884478	1281.7544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.95	1	105.95	105.45	106.45	0								0	0	0	0.37609	1	28029	28029		2.4985	0.84587	1		+		7011	20451	3670	3670	9497	9497					0.12479654605704127
EKILLNPTELL	11	Unmodified	_EKILLNPTELL_					0	0	0			REV__ENST00000373839.7_1_1:28823314-28823584:+|nuORF	REV__ENST00000373839.7_1_1:28823314-28823584:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8597412109375	2	641.884478	1281.7544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.37	1	105.37	104.87	105.87	-0.0027847								0	0	0	0.37609	1	27922	27922		2.4985	1.169	1		+		7012	20451	3670	3670	9498	9498					0.12479654605704127
EKILLNPTELL	11	Unmodified	_EKILLNPTELL_					0	0	0			REV__ENST00000373839.7_1_1:28823314-28823584:+|nuORF	REV__ENST00000373839.7_1_1:28823314-28823584:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8823852539062	2	641.884478	1281.7544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.35	1	106.35	105.85	106.85	-0.0060425								0	0	0	0.37609	1	28127	28127		2.4985	1.0166	1		+		7013	20451	3670	3670	9499	9499					0.12479654605704127
EKILLNPTELL	11	Unmodified	_EKILLNPTELL_					0	0	0			REV__ENST00000373839.7_1_1:28823314-28823584:+|nuORF	REV__ENST00000373839.7_1_1:28823314-28823584:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8823852539062	2	641.884478	1281.7544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.41	1	111.39	110.89	111.89	-0.013939								0	0	0	0.37609	1	28988	28988		2.4985	1.0166	1		+		7014	20451	3670	3670	9500	9500					0.12479654605704127
EKILLNPTELL	11	Unmodified	_EKILLNPTELL_					0	0	0			REV__ENST00000373839.7_1_1:28823314-28823584:+|nuORF	REV__ENST00000373839.7_1_1:28823314-28823584:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.861083984375	2	641.884478	1281.7544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.23	1	105.23	104.73	105.73	0.0031738								0	0	0	0.37609	1	27918	27918		2.4985	1.0166	1		+		7015	20451	3670	3670	9501	9501					0.12479654605704127
EKINKINRPLA	11	Unmodified	_EKINKINRPLA_					0	0	0		L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|135|3|sense	L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|135|3|sense	L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|135|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	648.393310546875	2	648.393336	1294.77212	0.15797	0.00010243	0.030807	1.9975E-05	0.18878	0.0001224	648.393405625132	98.676	1.1133	98.727	98.419	99.533	0.050896					328	144	4	0	0	0	0.46554	3	26388	26388;26457;26487		1.1933	0	1	751740			7016	12487	3671	3671	9502;9503;9504	9502					0.13652414651232903
EKINKINRPLA	11	Unmodified	_EKINKINRPLA_					0	0	0		L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|135|3|sense	L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|135|3|sense	L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|135|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	648.3932495117188	2	648.393336	1294.77212	0.27536	0.00017854	-0.055413	-3.5929E-05	0.21994	0.00014261	648.3933877596284	98.849	0.99235	98.842	98.505	99.497	-0.006897					264	122	4	0	0	0	0.46554	3	26471	26471;26503;26532		1.1933	0	1	690830			7017	12487	3671	3671	9505;9506;9507	9505					0.13652414651232903
EKIPVRYGT	9	Unmodified	_EKIPVRYGT_					0	0	0		ENST00000396355.5_1_16:15818941-15819124:+|nuORF	ENST00000396355.5_1_16:15818941-15819124:+|nuORF	ENST00000396355.5_1_16:15818941-15819124:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8167114257812	2	531.800749	1061.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.684	1	90.684	90.184	91.184	0								0	0	0	0.23182	1	24048	24048		12.241	2.8575	1				7018	10112	3672	3672	9508	9508					0.058614318515992636
EKIPVRYGT	9	Unmodified	_EKIPVRYGT_					0	0	0		ENST00000396355.5_1_16:15818941-15819124:+|nuORF	ENST00000396355.5_1_16:15818941-15819124:+|nuORF	ENST00000396355.5_1_16:15818941-15819124:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8167114257812	2	531.800749	1061.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.71	1	90.71	90.21	91.21	0								0	0	0	0.24066	1	24056	24056		9.3831	2.0939	1				7019	10112	3672	3672	9509	9509					0.058614318515992636
EKIQALPTVPV	11	Unmodified	_EKIQALPTVPV_					0	0	0		ENSG00000070423|ENST00000292363|RNF126	ENSG00000070423|ENST00000292363|RNF126	ENSG00000070423|ENST00000292363|RNF126	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.856201171875	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.805	1	93.805	93.305	94.305	-0.00051117								0	0	0	0.37707	1	24994	24994		2.2828	0.43854	1				7020	926	3673	3673	9510	9510					0.1128711626272434
EKIRDVLIQK	10	Unmodified	_EKIRDVLIQK_					0	0	0		ENSG00000154059|ENST00000284202|IMPACT	ENSG00000154059|ENST00000284202|IMPACT	ENSG00000154059|ENST00000284202|IMPACT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.2520751953125	2	621.382437	1240.75032	0.2235	0.00013888	-0.13045	-8.1061E-05	0.093048	5.7818E-05	621.382249550282	43.905	0.54917	43.905	43.656	44.206	0					39	19	3	0	0	0	0.32067	1	9750	9750		7.1017	0	1	819740			7021	5103	3674	3674	9511	9511					0.13957609902649892
EKIRGREGT	9	Unmodified	_EKIRGREGT_					0	0	0			REV__ENST00000495294.1_1_X:2825959-2847358:-|nuORF	REV__ENST00000495294.1_1_X:2825959-2847358:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3037109375	2	523.291079	1044.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.696	1	90.697	90.197	91.197	0.0003891								0	0	0	0.24066	1	24041	24041		9.3831	1.2276	1		+		7022	21659	3675	3675	9512	9512					0.047104755607279
EKIRMKVVF	9	Unmodified	_EKIRMKVVF_					0	0	0			REV__ENSG00000120057|ENST00000266066|SFRP5	REV__ENSG00000120057|ENST00000266066|SFRP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.345703125	2	575.344269	1148.67399	0.36616	0.00021067	1.5097	0.00086857	1.8758	0.0010792	575.3454640549686	88.497	1.7325	88.497	87.398	89.131	0					189	84	4	0	0	0	0.25989	4	23400	23311;23357;23400;23452		14.838	10.074	1	1263200	+		7023	15074	3676	3676	9513;9514;9515;9516	9515					0.105595148016846
EKIRMKVVF	9	Unmodified	_EKIRMKVVF_					0	0	0			REV__ENSG00000120057|ENST00000266066|SFRP5	REV__ENSG00000120057|ENST00000266066|SFRP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3458862304688	2	575.344269	1148.67399	0.415	0.00023877	0.71283	0.00041012	1.1278	0.00064889	575.3454592594685	88.398	2.6001	88.487	87.352	89.952	0.089195					247	141	4	0	0	0	0.22188	4	23370	23324;23370;23417;23462		20.454	9.6297	1	1377600	+		7024	15074	3676	3676	9517;9518;9519;9520	9518					0.105595148016846
EKIRMKVVF	9	Unmodified	_EKIRMKVVF_					0	0	0			REV__ENSG00000120057|ENST00000266066|SFRP5	REV__ENSG00000120057|ENST00000266066|SFRP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3460083007812	2	575.344269	1148.67399	0.3195	0.00018382	0.7171	0.00041258	1.0366	0.00059641	575.3455547204496	88.48	2.0391	88.477	87.952	89.991	-0.0028381					265	116	4	0	0	0	0.29176	4	23333	23286;23333;23430;23477		10.074	2.7788	1	1006200	+		7025	15074	3676	3676	9521;9522;9523;9524	9522					0.105595148016846
EKIRMKVVF	9	Unmodified	_EKIRMKVVF_					0	0	0			REV__ENSG00000120057|ENST00000266066|SFRP5	REV__ENSG00000120057|ENST00000266066|SFRP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8433837890625	2	575.344269	1148.67399	0.3195	0.00018382	0.7171	0.00041258	1.0366	0.00059641	575.3455547204496	88.48	2.0391	88.477	87.952	89.991	-0.0028381					265	116	4	0	0	0	0.25202	1	23286	23286		6.7232	1.9672	1	1006200	+		7026	15074	3676	3676	9525	9525					0.105595148016846
EKISHATEEL	10	Unmodified	_EKISHATEEL_					0	0	0		nc|ENSG00000150527|Q96PC5-6|MIA2;nc|ENSG00000150527|Q96PC5-11|MIA2;nc|ENSG00000150527|Q96PC5-13|MIA2;nc|ENSG00000150527|Q96PC5-5|MIA2;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-10|MIA2;nc|ENSG00000150527|Q96PC5-9|MIA2;ENSG00000236761|ENST00000314099|CTAGE9;nc|ENSG00000150527|Q96PC5-14|MIA2;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2;ENSG00000150527|ENST00000640607|MIA2	nc|ENSG00000150527|Q96PC5-6|MIA2	nc|ENSG00000150527|Q96PC5-6|MIA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.7833862304688	2	578.79586	1155.57717	0.29639	0.00017155	0.3489	0.00020194	0.64529	0.00037349	578.7959073667957	28.911	0.48152	28.907	28.72	29.202	-0.0042572					32	16	3	0	0	0	0.31867	1	5142	5142		18.146	2.2992	1	343000			7027	4914	3677	3677	9526	9526					0.005601990555760494
EKKHKLLLL	9	Unmodified	_EKKHKLLLL_					0	0	0			REV__ENST00000261254.7_1_12:4412413-4412500:+|nuORF	REV__ENST00000261254.7_1_12:4412413-4412500:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7948608398438	2	561.373884	1120.73321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.85	1	115.85	115.35	116.35	0								0	0	0	0.26734	1	30011	30011		0.45834	0.057624	1		+		7028	19587	3678	3678	9527	9527					0.1776773408751069
EKKIMIYLLLK	11	Unmodified	_EKKIMIYLLLK_					0	0	0		ENST00000605810.1_1_3:70174691-70175321:-|nuORF	ENST00000605810.1_1_3:70174691-70175321:-|nuORF	ENST00000605810.1_1_3:70174691-70175321:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2743225097656	3	464.628003	1390.86218	-0.18707	-8.6918E-05	0.85844	0.00039885	0.67137	0.00031194	464.62848965751743	13.56	0.24277	13.493	13.388	13.63	-0.067495					15	8	2	0	0	0	0.33263	1	494	494		3.8459	1.4111	1	28959			7029	12290	3679	3679	9528	9528					0.18238327935432608
EKKIMIYLLLK	11	Unmodified	_EKKIMIYLLLK_					0	0	0		ENST00000605810.1_1_3:70174691-70175321:-|nuORF	ENST00000605810.1_1_3:70174691-70175321:-|nuORF	ENST00000605810.1_1_3:70174691-70175321:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	464.628003	1390.86218	-0.35053	-0.00016287	0.96152	0.00044675	0.61099	0.00028388	464.62829376118987	13.453	0.22806	13.453	13.309	13.537	0	-0.0044766	0.00023354	NaN	3.8459	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25565			7030	12290	3679	3679							0.18238327935432608
EKKIMIYLLLK	11	Unmodified	_EKKIMIYLLLK_					0	0	0		ENST00000605810.1_1_3:70174691-70175321:-|nuORF	ENST00000605810.1_1_3:70174691-70175321:-|nuORF	ENST00000605810.1_1_3:70174691-70175321:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	464.628003	1390.86218	-0.34912	-0.00016221	0.37687	0.0001751	0.027748	1.2892E-05	464.6279763966593	13.527	0.15636	13.427	13.362	13.519	-0.099291	-0.030452	-0.0005814	NaN	3.8459	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33939			7031	12290	3679	3679							0.18238327935432608
EKKKLSAKP	9	Unmodified	_EKKKLSAKP_					0	0	0			REV__nc|ENSG00000078487|Q9H0M4-5|ZCWPW1	REV__nc|ENSG00000078487|Q9H0M4-5|ZCWPW1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.814208984375	2	514.826766	1027.63898	-0.24018	-0.00012365	-0.25309	-0.0001303	-0.49327	-0.00025395	514.8267651832703	12.629	0.21098	12.562	12.491	12.702	-0.067496					10	6	2	0	0	0	0.31763	1	177	177		6.2058	0.47393	1	59145	+		7032	22900	3680	3680	9529	9529					0.12626595265373908
EKKKTYIMKP	10	Unmodified	_EKKKTYIMKP_					0	0	0		ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3694458007812	2	633.367941	1264.72133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.665	1	93.665	93.165	94.165	0								0	0	0	0.37739	1	24954	24954		3.2813	0.28607	1				7033	9089	3681	3681	9530	9530					0.09955749281994031
EKKKTYIMKP	10	Unmodified	_EKKKTYIMKP_					0	0	0		ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3690795898438	2	633.367941	1264.72133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.51	1	114.51	114.01	115.01	0								0	0	0	0.38166	1	29706	29706		1.4819	0	1				7034	9089	3681	3681	9531	9531					0.09955749281994031
EKKKTYIMKP	10	Unmodified	_EKKKTYIMKP_					0	0	0		ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8250122070312	2	633.367941	1264.72133	-0.059953	-3.7972E-05	2.9528	0.0018702	2.8928	0.0018322	633.3701852152622	100.23	0.23251	100.23	100.09	100.32	0					52	29	2	0	0	0	0.32132	1	26785	26785		1.4819	0.15237	1	95404			7035	9089	3681	3681	9532	9532					0.09955749281994031
EKKKTYIMKP	10	Unmodified	_EKKKTYIMKP_					0	0	0		ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3695068359375	2	633.367941	1264.72133	0.2818	0.00017848	1.0736	0.00068001	1.3554	0.0008585	633.3684023454143	95.016	0.56738	95.099	95	95.567	0.082779					85	55	2	0	0	0	0.40106	1	25408	25408		3.2813	0.28607	1	180190			7036	9089	3681	3681	9533	9533					0.09955749281994031
EKKKTYIMKP	10	Unmodified	_EKKKTYIMKP_					0	0	0		ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.368896484375	2	633.367941	1264.72133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.249	1	99.3	98.8	99.8	0.050888								0	0	0	0.38166	1	26558	26558		1.4819	0	1				7037	9089	3681	3681	9534	9534					0.09955749281994031
EKKKTYIMKP	10	Unmodified	_EKKKTYIMKP_					0	0	0		ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3690185546875	2	633.367941	1264.72133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.81	1	102.83	102.33	103.33	0.016685								0	0	0	0.37739	1	27338	27338		3.2813	1.7994	1				7038	9089	3681	3681	9535	9535					0.09955749281994031
EKKKTYIMKP	10	Unmodified	_EKKKTYIMKP_					0	0	0		ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3685302734375	2	633.367941	1264.72133	0.55417	0.00035099	1.1496	0.0007281	1.7037	0.0010791	633.3685264078376	94.881	0.79994	94.879	94.349	95.149	-0.0020142					98	69	2	0	0	0	0.40106	1	25383	25383		3.2813	0.78282	1	173060			7039	9089	3681	3681	9536	9536					0.09955749281994031
EKKKTYIMKP	10	Unmodified	_EKKKTYIMKP_					0	0	0		ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3685302734375	2	633.367941	1264.72133	0.53294	0.00033755	1.1869	0.00075177	1.7199	0.0010893	633.3685524579486	95.498	0.58765	95.495	95.147	95.735	-0.0038223					95	59	2	0	0	0	0.40106	1	25442	25442		3.2813	0.28607	1	171810			7040	9089	3681	3681	9537	9537					0.09955749281994031
EKKKTYIMKP	10	Unmodified	_EKKKTYIMKP_					0	0	0		ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	ENST00000272793.9_1_2:170938445-170938493:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3688354492188	2	633.367941	1264.72133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.11	1	114.13	113.63	114.63	0.016708								0	0	0	0.38166	1	29680	29680		1.4819	0	1				7041	9089	3681	3681	9538	9538					0.09955749281994031
EKKLCTHKN	9	Unmodified	_EKKLCTHKN_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3331909179688	2	550.797683	1099.58081	0.01144	6.3009E-06	0.27774	0.00015298	0.28918	0.00015928	550.7978843355335	25.36	0.69398	25.329	24.988	25.682	-0.031408					39	24	2	0	0	0	0.24848	1	3947	3947		13.906	7.1829	1	131760			7042	4660	3682	3682	9539	9539					0.035005903484488954
EKKLENERM	9	Unmodified	_EKKLENERM_					0	0	0		ENSG00000198003|ENST00000356392|ODAD3;nc|ENSG00000198003|A5D8V7-2|ODAD3	ENSG00000198003|ENST00000356392|ODAD3	ENSG00000198003|ENST00000356392|ODAD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.3170776367188	2	588.805705	1175.59686	0.048773	2.8718E-05	0.71547	0.00042127	0.76424	0.00044999	588.8055598996023	12.471	0.28708	12.374	12.206	12.493	-0.096607					15	9	3	0	0	0	0.26204	1	159	159		1.4819	0	1	23830			7043	8024	3683	3683	9540	9540					0.016082517946870212
EKKLHKIQNK	10	Unmodified	_EKKLHKIQNK_					0	0	0		nc|ENSG00000102387|Q5H9L4-3|TAF7L;ENSG00000102387|ENST00000356784|TAF7L;nc|ENSG00000102387|Q5H9L4|TAF7L	nc|ENSG00000102387|Q5H9L4-3|TAF7L	nc|ENSG00000102387|Q5H9L4-3|TAF7L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5944519042969	3	422.594461	1264.76155	-0.0339	-1.4326E-05	0.4995	0.00021108	0.4656	0.00019676	422.5945135182265	104.58	0.71965	104.58	104.35	105.07	0.0011444					195	104	3	0	0	0	0.41025	2	27777	27777;27782		1.5923	0.96546	1	515900			7044	1765	3684	3684	9541;9542	9541					0.13976431996798055
EKKLQLRSKR	10	Unmodified	_EKKLQLRSKR_					0	0	0			REV__ENST00000421315.1_1_6:74000735-74000831:+|nuORF	REV__ENST00000421315.1_1_6:74000735-74000831:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.2731018066406	3	429.273611	1284.799	-0.22007	-9.447E-05	-0.29882	-0.00012828	-0.51889	-0.00022275	429.2732128007633	97.232	1.4529	97.303	96.432	97.885	0.070465					384	151	4	0	0	0	0.32068	1	25991	25991		1.7423	0.52744	1	1883700	+		7045	20865	3685	3685	9543	9543					0.16799523262420735
EKKLQLRSKR	10	Unmodified	_EKKLQLRSKR_					0	0	0			REV__ENST00000421315.1_1_6:74000735-74000831:+|nuORF	REV__ENST00000421315.1_1_6:74000735-74000831:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	429.273611	1284.799	-0.38647	-0.0001659	-0.65593	-0.00028157	-1.0424	-0.00044747	429.27325187191303	97.323	0.85384	97.323	97.036	97.89	0	0.010357	-7.8833E-06	NaN	1.7423	197	87	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	824560	+		7046	20865	3685	3685							0.16799523262420735
EKKLQQSTK	9	Unmodified	_EKKLQQSTK_					0	0	0		ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENST00000375204.2_1_9:100053158-100058044:+|nuORF;ENST00000529787.2_1_9:100053158-100088872:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3167114257812	2	545.316763	1088.61897	0.44923	0.00024497	-0.11532	-6.2886E-05	0.33391	0.00018209	545.3167475035995	80.336	3.7431	80.336	79.338	83.081	0					624	150	6	0	0	0	0.31417	1	20701	20701		6.7232	6.7232	1	16346000			7047	9910	3686	3686	9544	9544					0.07820799534761136
EKKLQQSTK	9	Unmodified	_EKKLQQSTK_					0	0	0		ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENST00000375204.2_1_9:100053158-100058044:+|nuORF;ENST00000529787.2_1_9:100053158-100088872:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3164672851562	2	545.316763	1088.61897	0.44591	0.00024316	-0.03167	-1.727E-05	0.41424	0.00022589	545.3167857690152	80.248	3.793	80.313	79.277	83.07	0.065102					607	160	5	0	0	0	0.31417	1	20678	20678		6.7232	6.7232	1	16780000			7048	9910	3686	3686	9545	9545					0.07820799534761136
EKKLTFILLF	10	Unmodified	_EKKLTFILLF_					0	0	0		ENST00000379619.5_1_2:28639168-28639276:+|nuORF	ENST00000379619.5_1_2:28639168-28639276:+|nuORF	ENST00000379619.5_1_2:28639168-28639276:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.3906860351562	2	626.389199	1250.76385	-0.03195	-2.0013E-05	0.47821	0.00029954	0.44626	0.00027953	626.8901724686411	104.43	0.13857	104.43	104.4	104.54	0					27	18	2	0	0	0	0.41085	1	27742	27742		1.4819	0.15237	1	182430			7049	9971	3687	3687	9546	9546					0.14849467681892747
EKKLTFILLF	10	Unmodified	_EKKLTFILLF_					0	0	0		ENST00000379619.5_1_2:28639168-28639276:+|nuORF	ENST00000379619.5_1_2:28639168-28639276:+|nuORF	ENST00000379619.5_1_2:28639168-28639276:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.3862915039062	2	626.389199	1250.76385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.38	1	104.38	103.88	104.88	0								0	0	0	0.38166	1	27712	27712		1.4819	0.15237	1				7050	9971	3687	3687	9547	9547					0.14849467681892747
EKKLTFILLF	10	Unmodified	_EKKLTFILLF_					0	0	0		ENST00000379619.5_1_2:28639168-28639276:+|nuORF	ENST00000379619.5_1_2:28639168-28639276:+|nuORF	ENST00000379619.5_1_2:28639168-28639276:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.3912963867188	2	626.389199	1250.76385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.29	1	104.29	103.79	104.79	0.0018463								0	0	0	0.38166	1	27705	27705		1.4819	0.15237	1				7051	9971	3687	3687	9548	9548					0.14849467681892747
EKKLTFILLF	10	Unmodified	_EKKLTFILLF_					0	0	0		ENST00000379619.5_1_2:28639168-28639276:+|nuORF	ENST00000379619.5_1_2:28639168-28639276:+|nuORF	ENST00000379619.5_1_2:28639168-28639276:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.3908081054688	2	626.389199	1250.76385	0.12648	7.9226E-05	-0.88626	-0.00055514	-0.75978	-0.00047592	626.3895401431339	103.17	0.72874	103.17	102.89	103.62	-0.0011139					171	104	2	0	0	0	0.32033	1	27519	27519		3.5965	0.60125	1	23725000			7052	9971	3687	3687	9549	9549					0.14849467681892747
EKKRAARP	8	Unmodified	_EKKRAARP_					0	0	0			REV__CON__Q2KJ83	REV__CON__Q2KJ83	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.30133056640625	2	478.293425	954.572297	-0.18552	-8.8735E-05	-0.58851	-0.00028148	-0.77403	-0.00037021	478.29266376077567	12.222	0.17481	12.154	12.051	12.226	-0.068059					16	7	3	0	0	0	0.46491	1	47	47		0.69038	0.088878	1	58852	+	+	7053	13264	3688	3688	9550	9550					0.09319404494124228
EKKSMYHTMSL	11	Unmodified	_EKKSMYHTMSL_					0	0	0			REV__nc|ENSG00000165275|Q6PF06-2|TRMT10B	REV__nc|ENSG00000165275|Q6PF06-2|TRMT10B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.9126281738281	3	452.221307	1353.64209	0.045479	2.0567E-05	-1.9224	-0.00086935	-1.8769	-0.00084878	452.5545436947042	25.001	0.29953	24.945	24.748	25.048	-0.055931					16	10	2	0	0	0	0.33085	1	3887	3887		5.5233	0	1	83897	+		7054	17224	3689	3689	9551	9551					-0.020582657344448307
EKKSMYHTMSL	11	Unmodified	_EKKSMYHTMSL_					0	0	0			REV__nc|ENSG00000165275|Q6PF06-2|TRMT10B	REV__nc|ENSG00000165275|Q6PF06-2|TRMT10B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.9126892089844	3	452.221307	1353.64209	-0.21764	-9.8422E-05	-2.3832	-0.0010777	-2.6008	-0.0011762	452.2202849851752	25.189	0.69735	25.157	24.709	25.406	-0.031408					32	23	2	0	0	0	0.32912	1	3873	3873		8.2864	1.2493	1	80368	+		7055	17224	3689	3689	9552	9552					-0.020582657344448307
EKKVDSCLT	9	Unmodified	_EKKVDSCLT_					0	0	0		nc|ENSG00000204946|Q6ZMS7-1|ZNF783;ENSG00000204946|ENST00000434415|ZNF783	nc|ENSG00000204946|Q6ZMS7-1|ZNF783	nc|ENSG00000204946|Q6ZMS7-1|ZNF783	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.8148498535156	2	511.762975	1021.5114	0.54956	0.00028125	1.0784	0.00055186	1.6279	0.00083311	511.7635357686221	20.933	0.68163	20.823	20.553	21.234	-0.11003					38	23	2	0	0	0	0.25622	1	2757	2757		7.2892	0.56607	1	102240			7056	8262	3690	3690	9553	9553					0.001500866090168529
EKLANRVTA	9	Unmodified	_EKLANRVTA_					0	0	0			REV__ENSG00000119042|ENST00000417098|SATB2	REV__ENSG00000119042|ENST00000417098|SATB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.29083251953125	2	501.290548	1000.56654	0.41719	0.00020913	-0.20319	-0.00010186	0.214	0.00010727	501.2903398118738	88.66	1.7529	88.749	87.832	89.585	0.089203					134	86	3	0	0	0	0.3208	1	23402	23402		5.7319	5.7319	1	407800	+		7057	15027	3691	3691	9554	9554					0.06628261191804086
EKLEDAESSN	10	Unmodified	_EKLEDAESSN_					0	0	0		ENSG00000111875|ENST00000229595|ASF1A	ENSG00000111875|ENST00000229595|ASF1A	ENSG00000111875|ENST00000229595|ASF1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2516479492188	2	561.251482	1120.48841	0.3945	0.00022141	0.092511	5.1922E-05	0.48701	0.00027333	561.2513968884969	44.421	0.95053	44.421	43.904	44.855	0					63	34	2	0	0	0	0.37454	1	9902	9902		8.1555	0	1	1760100			7058	2397	3692	3692	9555	9555					-0.0670126097472803
EKLFPRIVTY	10	Unmodified	_EKLFPRIVTY_					0	0	0			REV__ENSG00000146352|ENST00000275162|CLVS2	REV__ENSG00000146352|ENST00000275162|CLVS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3671264648438	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.901	1	96.901	96.401	97.401	0								0	0	0	0.37807	1	25903	25903		2.9952	0	1		+		7059	16344	3693	3693	9556	9556					0.09618822499669477
EKLHRAAA	8	Unmodified	_EKLHRAAA_					0	0	0		ENST00000475773.5_1_1:29520536-29527072:-|nuORF;ENST00000453185.5_1_1:29522511-29533334:-|nuORF	ENST00000475773.5_1_1:29520536-29527072:-|nuORF	ENST00000475773.5_1_1:29520536-29527072:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2604675292969	2	448.259051	894.503549	0.31238	0.00014003	0.7852	0.00035197	1.0976	0.000492	448.2595721889661	82.285	0.93786	82.285	81.844	82.782	0					47	34	2	0	0	0	0.45307	1	21482	21482		4.756	0.42677	1	381350			7060	10667	3694	3694	9557	9557					0.052077401944075064
EKLHRAAA	8	Unmodified	_EKLHRAAA_					0	0	0		ENST00000475773.5_1_1:29520536-29527072:-|nuORF;ENST00000453185.5_1_1:29522511-29533334:-|nuORF	ENST00000475773.5_1_1:29520536-29527072:-|nuORF	ENST00000475773.5_1_1:29520536-29527072:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	448.259051	894.503549	0.10469	4.6928E-05	-1.2676	-0.00056822	-1.1629	-0.00052129	448.2594706073286	82.185	0.85014	82.254	81.823	82.673	0.068993	0.010832	-0.0015126	NaN	4.756	55	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411070			7061	10667	3694	3694							0.052077401944075064
EKLITEDVSLP	11	Unmodified	_EKLITEDVSLP_					0	0	0		ENST00000507760.5_1_4:25316955-25334812:+|nuORF	ENST00000507760.5_1_4:25316955-25334812:+|nuORF	ENST00000507760.5_1_4:25316955-25334812:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.33447265625	2	622.342643	1242.67073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.61	1	106.61	106.11	107.11	-0.0060425								0	0	0	0.35514	1	28181	28181		7.1017	1.8048	1				7062	11340	3695	3695	9558	9558					0.05910498437992828
EKLKCLFRL	9	Unmodified	_EKLKCLFRL_					0	0	0			REV__ENSG00000129083|ENST00000439561|COPB1	REV__ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.345703125	2	575.344269	1148.67399	0.3195	0.00018382	0.7171	0.00041258	1.0366	0.00059641	575.3455547204496	88.48	2.0391	88.477	87.952	89.991	-0.0028381					265	116	4	0	0	0	0.25989	3	23375	23375;23537;23696		14.838	0.3479	1	1006200	+		7063	15399	3696	3696	9559;9560;9561	9559					0.105595148016846
EKLKNGRVLSP	11	Unmodified	_EKLKNGRVLSP_					0	0	0		nc|ENSG00000165115|Q86VH2-3|KIF27;nc|ENSG00000165115|Q86VH2-2|KIF27;ENSG00000165115|ENST00000297814|KIF27	nc|ENSG00000165115|Q86VH2-3|KIF27	nc|ENSG00000165115|Q86VH2-3|KIF27	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.708740234375	2	620.872237	1239.72992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.251	1	93.25	92.75	93.75	-0.00051117								0	0	0	0.36335	1	24827	24827		5.2969	2.0156	1				7064	5927	3697	3697	9562	9562					0.11964439242842673
EKLLNRSSV	9	Unmodified	_EKLLNRSSV_					0	0	0		nc|ENSG00000177398|Q5DID0-3|UMODL1;ENSG00000177398|ENST00000408910|UMODL1;nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1	nc|ENSG00000177398|Q5DID0-3|UMODL1	nc|ENSG00000177398|Q5DID0-3|UMODL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3031616210938	2	523.303655	1044.59276	0.4011	0.0002099	1.2454	0.00065171	1.6465	0.00086161	523.3034486081347	75.393	0.9416	75.393	74.962	75.903	0					125	33	5	0	0	0	0.32638	1	19306	19306		4.897	0.36815	1	940740			7065	6984	3698	3698	9563	9563					0.07224530363282611
EKLLNRSSV	9	Unmodified	_EKLLNRSSV_					0	0	0		nc|ENSG00000177398|Q5DID0-3|UMODL1;ENSG00000177398|ENST00000408910|UMODL1;nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1	nc|ENSG00000177398|Q5DID0-3|UMODL1	nc|ENSG00000177398|Q5DID0-3|UMODL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3035888671875	2	523.303655	1044.59276	0.24256	0.00012693	-0.42969	-0.00022486	-0.18714	-9.793E-05	523.3033251497191	80.829	0.58663	80.894	80.546	81.133	0.065094					46	24	2	0	0	0	0.29638	1	21014	21014		9.3831	0	1	1052300			7066	6984	3698	3698	9564	9564					0.07224530363282611
EKLNKKQN	8	Unmodified	_EKLNKKQN_					0	0	0			REV__ENSG00000184999|ENST00000332793|SLC22A10	REV__ENSG00000184999|ENST00000332793|SLC22A10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2906494140625	2	501.290548	1000.56654	0.42116	0.00021113	-0.15709	-7.8747E-05	0.26408	0.00013238	501.2904101407893	88.806	0.95444	88.805	88.447	89.401	-0.0013123					94	42	3	0	0	0	0.44569	1	23521	23521		7.2892	0.56607	1	464560	+		7067	18346	3699	3699	9565	9565					0.06628261191792717
EKLNLNKTSL	10	Unmodified	_EKLNLNKTSL_					0	0	0			REV__ENST00000524045.6_1_8:107071351-107072670:-|nuORF	REV__ENST00000524045.6_1_8:107071351-107072670:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.33837890625	2	580.337695	1158.66084	0.308	0.00017874	-0.42978	-0.00024942	-0.12178	-7.0675E-05	580.3370782267117	91.563	0.79214	91.653	91.496	92.289	0.090668					77	52	2	0	0	0	0.39009	1	24296	24296		5.2969	0.39987	1	197870	+		7068	21784	3700	3700	9566	9566					0.08785355223290026
EKLPKVRRQE	10	Unmodified	_EKLPKVRRQE_					0	0	0		ENSG00000136560|ENST00000392749|TANK	ENSG00000136560|ENST00000392749|TANK	ENSG00000136560|ENST00000392749|TANK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.3849487304688	2	641.883136	1281.75172	0.043752	2.8084E-05	-0.15572	-9.9951E-05	-0.11196	-7.1868E-05	642.3846931450247	97.965	0.16931	97.965	97.914	98.084	0					24	18	2	0	0	0	0.40262	1	26220	26220		2.9952	1.8019	1	110420			7069	3983	3701	3701	9567	9567					0.12211243991396259
EKLPKVRRQE	10	Unmodified	_EKLPKVRRQE_					0	0	0		ENSG00000136560|ENST00000392749|TANK	ENSG00000136560|ENST00000392749|TANK	ENSG00000136560|ENST00000392749|TANK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.3843994140625	2	641.883136	1281.75172	0.010778	6.918E-06	0.051593	3.3117E-05	0.062371	4.0035E-05	641.8829400044114	98.645	0.61124	98.645	98.334	98.945	0					113	70	2	0	0	0	0.41085	1	26388	26388		1.4819	0.28856	1	117030			7070	3983	3701	3701	9568	9568					0.12211243991396259
EKLPKVRRQE	10	Unmodified	_EKLPKVRRQE_					0	0	0		ENSG00000136560|ENST00000392749|TANK	ENSG00000136560|ENST00000392749|TANK	ENSG00000136560|ENST00000392749|TANK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	641.883136	1281.75172	0.46034	0.00029549	-0.80935	-0.00051951	-0.34901	-0.00022402	641.8825240071104	98.189	0.22656	98.182	98.027	98.253	-0.0068283	0.10877	-0.00017552	NaN	2.9952	30	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178070			7071	3983	3701	3701							0.12211243991396259
EKLPRHIRKAK	11	Unmodified	_EKLPRHIRKAK_					0	0	0			REV__ENST00000514352.5_1_4:91234111-91389506:+|nuORF	REV__ENST00000514352.5_1_4:91234111-91389506:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.6238708496094	3	459.293005	1374.85719	0.11323	5.2005E-05	-0.29506	-0.00013552	-0.18184	-8.3516E-05	459.2928833622268	100.09	1.6771	100.09	99.483	101.16	-0.006897					307	231	2	0	0	0	0.33334	1	26842	26842		0.40827	0.078994	1	3114300	+		7072	21835	3702	3702	9569	9569					0.18475204907645093
EKLPRHIRKAK	11	Unmodified	_EKLPRHIRKAK_					0	0	0			REV__ENST00000514352.5_1_4:91234111-91389506:+|nuORF	REV__ENST00000514352.5_1_4:91234111-91389506:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	459.293005	1374.85719	-0.11046	-5.0732E-05	-0.35324	-0.00016224	-0.4637	-0.00021297	459.29285111543334	99.969	1.1729	100.01	99.498	100.67	0.038994	-0.039083	-3.1681E-05	NaN	0.40827	224	156	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4682700	+		7073	21835	3702	3702							0.18475204907645093
EKLQYRPRPSL	11	Unmodified	_EKLQYRPRPSL_					0	0	0			REV__ENST00000211936.10_1_6:27425181-27440162:-|nuORF	REV__ENST00000211936.10_1_6:27425181-27440162:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.2873229980469	3	462.933254	1385.77793	0.00069036	3.1959E-07	-0.2711	-0.0001255	-0.27041	-0.00012518	462.9331096366579	41.057	0.64988	41.154	40.748	41.397	0.096622					34	23	2	0	0	0	0.33189	1	8848	8848		3.5927	0	1	446620	+		7074	19404	3703	3703	9570	9570					0.1004751316288548
EKLRDTYI	8	Unmodified	_EKLRDTYI_					0	0	0		nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;ENST00000517413.5_1_8:17512046-17533895:-|nuORF;nc|ENSG00000129422|Q9ULD2-4|MTUS1;nc|ENSG00000129422|Q9ULD2-7|MTUS1;nc|ENSG00000129422|Q9ULD2-3|MTUS1;nc|ENSG00000129422|Q9ULD2-6|MTUS1	nc|ENSG00000129422|Q9ULD2-2|MTUS1	nc|ENSG00000129422|Q9ULD2-2|MTUS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.777099609375	2	519.284931	1036.55531	0.59524	0.0003091	-0.004552	-2.3638E-06	0.59069	0.00030674	519.2851628166599	40.563	0.67707	40.563	40.283	40.96	0					46	24	3	0	0	0	0.3408	1	8763	8763		14.838	1.7958	1	702740			7075	3424	3704	3704	9571	9571					0.03849439097643881
EKLRRADRSRK	11	Unmodified	_EKLRRADRSRK_					0	0	0			REV__ENST00000594723.1_1_19:49134096-49134354:-|nuORF	REV__ENST00000594723.1_1_19:49134096-49134354:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2833251953125	3	472.283169	1413.82768	0.23329	0.00011018	0.29476	0.00013921	0.52805	0.00024939	472.28317409020764	90.187	1.0503	90.278	89.814	90.865	0.090675					271	81	6	0	0	0	0.44088	1	23905	23905		5.8681	5.8681	1	2259300	+		7076	14461	3705	3705	9572	9572					0.13731640891523966
EKLRRADRSRK	11	Unmodified	_EKLRRADRSRK_					0	0	0			REV__ENST00000594723.1_1_19:49134096-49134354:-|nuORF	REV__ENST00000594723.1_1_19:49134096-49134354:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2832336425781	3	472.283169	1413.82768	0.23329	0.00011018	0.29476	0.00013921	0.52805	0.00024939	472.28317409020764	90.187	1.0503	90.278	89.814	90.865	0.090675					271	81	6	0	0	0	0.3325	1	23940	23940		4.1166	4.1166	1	2259300	+		7077	14461	3705	3705	9573	9573					0.13731640891523966
EKLRRADRSRK	11	Unmodified	_EKLRRADRSRK_					0	0	0			REV__ENST00000594723.1_1_19:49134096-49134354:-|nuORF	REV__ENST00000594723.1_1_19:49134096-49134354:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2829895019531	3	472.283169	1413.82768	0.21255	0.00010038	0.2957	0.00013965	0.50825	0.00024004	472.2829784465909	90.927	0.41351	91.018	90.816	91.229	0.090675					83	30	3	0	0	0	0.3331	1	24057	24057		2.2527	2.2527	1	2407300	+		7078	14461	3705	3705	9574	9574					0.13731640891523966
EKLRRADRSRK	11	Unmodified	_EKLRRADRSRK_					0	0	0			REV__ENST00000594723.1_1_19:49134096-49134354:-|nuORF	REV__ENST00000594723.1_1_19:49134096-49134354:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.28338623046875	3	472.283169	1413.82768	0.36037	0.0001702	0.20425	9.6464E-05	0.56462	0.00026666	472.2830893523784	90.376	1.5236	90.377	89.843	91.366	0.00039673					396	114	5	0	0	0	0.45422	1	23932	23932		4.1166	4.1166	1	3136100	+		7079	14461	3705	3705	9575	9575					0.13731640891523966
EKLRRADRSRK	11	Unmodified	_EKLRRADRSRK_					0	0	0			REV__ENST00000594723.1_1_19:49134096-49134354:-|nuORF	REV__ENST00000594723.1_1_19:49134096-49134354:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	472.283169	1413.82768	0.1337	6.3143E-05	0.40416	0.00019088	0.53785	0.00025402	472.28317047279177	90.495	1.5395	90.495	89.813	91.353	0	0.11196	0.00015775	NaN	5.8681	450	122	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2429900	+		7080	14461	3705	3705							0.13731640891523966
EKLSLISALH	10	Unmodified	_EKLSLISALH_					0	0	0			REV__ENSG00000134193|ENST00000256585|REG4	REV__ENSG00000134193|ENST00000256585|REG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3450927734375	2	555.829506	1109.64446	-0.032551	-1.8093E-05	-1.042	-0.00057919	-1.0746	-0.00059728	555.8292689237283	12.811	0.53137	12.811	12.669	13.2	0					66	18	5	0	0	0	0.38515	1	295	295		6.2058	0	1	515540	+		7081	15657	3706	3706	9576	9576					0.09402274057174509
EKLSLISALH	10	Unmodified	_EKLSLISALH_					0	0	0			REV__ENSG00000134193|ENST00000256585|REG4	REV__ENSG00000134193|ENST00000256585|REG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3450317382812	2	555.829506	1109.64446	-0.17205	-9.5629E-05	-0.82728	-0.00045983	-0.99933	-0.00055546	555.8293001623834	12.855	0.46144	12.787	12.64	13.102	-0.067496					56	15	5	0	0	0	0.39745	1	312	312		3.9444	0	1	553400	+		7082	15657	3706	3706	9577	9577					0.09402274057174509
EKLVFMVC	8	Unmodified	_EKLVFMVC_					0	0	0			REV__ENST00000477069.5_1_9:131747266-131765892:+|nuORF	REV__ENST00000477069.5_1_9:131747266-131765892:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7744445800781	2	484.750824	967.487096	-0.094753	-4.5932E-05	0.62088	0.00030097	0.52613	0.00025504	484.7497346334726	13.81	0.27532	13.81	13.687	13.962	0					19	9	3	0	0	0	0.34247	1	520	520		8.5933	0	1	30037	+		7083	14098	3707	3707	9578	9578					0.002051549217981119
EKLYLTIRQF	10	Unmodified	_EKLYLTIRQF_					0	0	0			REV__ENSG00000188379|ENST00000380206|IFNA2	REV__ENSG00000188379|ENST00000380206|IFNA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.5870056152344	3	437.587084	1309.73942	0.13564	5.9356E-05	-0.20531	-8.9842E-05	-0.069669	-3.0486E-05	437.5870363035621	53.316	0.50081	53.316	53.173	53.674	0					44	18	3	0	0	0	0.37823	1	12598	12598		7.4771	0.85361	1	620440	+		7084	18551	3708	3708	9579	9579					0.09694207528355037
EKLYSSLSH	9	Unmodified	_EKLYSSLSH_					0	0	0			REV__ENST00000479555.1_1_3:99885204-99890767:+|nuORF	REV__ENST00000479555.1_1_3:99885204-99890767:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8351440429688	2	532.274564	1062.53457	0.50633	0.00026951	-2.4379	-0.0012976	-1.9316	-0.0010281	532.2749895305114	96.496	0.21749	96.49	96.441	96.659	-0.0055466					28	21	2	0	0	0	0.25706	1	25822	25822		3.5965	0	1	126790	+		7085	18308	3709	3709	9580	9580					0.00580848718004745
EKMITIEEA	9	Unmodified	_EKMITIEEA_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.922119140625	2	532.270632	1062.52671	0.12029	6.4028E-05	2.6785	0.0014257	2.7988	0.0014897	532.2719632550609	13.982	0.14637	13.916	13.861	14.007	-0.066067					5	4	2	0	0	0	0.25879	1	586	586		4.756	0.81161	1	12537			7086	2405	3710	3710	9581	9581					-0.0020504659376001655
EKMWEQEEKMR	11	Unmodified	_EKMWEQEEKMR_					0	0	0		nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2;ENSG00000174450|ENST00000567107|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.5709228515625	3	508.570888	1522.69083	0.12116	6.1618E-05	0.20389	0.00010369	0.32505	0.00016531	508.57098255926087	25.866	0.7737	25.844	25.524	26.298	-0.022236					78	27	4	0	0	0	0.46842	1	4158	4158		2.2527	0	1	869090			7087	6795	3711	3711	9582	9582					-0.04960397165359609
EKNECLAEV	9	Unmodified	_EKNECLAEV_					0	0	0			REV__ENSG00000188033|ENST00000311437|ZNF490	REV__ENSG00000188033|ENST00000311437|ZNF490	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3169555664062	2	517.744782	1033.47501	0.32653	0.00016906	-0.76768	-0.00039746	-0.44115	-0.0002284	517.7441800810506	79.786	0.99809	79.848	79.465	80.463	0.061417					46	37	2	0	0	0	0.24636	1	20683	20683		11.495	0	1	218120	+		7088	18535	3712	3712	9583	9583					-0.04038790287700067
EKNESDGEH	9	Unmodified	_EKNESDGEH_					0	0	0			REV__ENSG00000171724|ENST00000302536|VAT1L	REV__ENSG00000171724|ENST00000302536|VAT1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7931518554688	2	522.715067	1043.41558	0.23938	0.00012513	-0.052045	-2.7205E-05	0.18734	9.7923E-05	522.7150661256446	15.68	0.23498	15.68	15.528	15.763	0					11	7	2	0	0	0	0.26031	1	1122	1122		3.5965	1.019	1	28293	+		7089	17661	3713	3713	9584	9584					-0.1043896997750835
EKNKLKNAP	9	Unmodified	_EKNKLKNAP_					0	0	0			REV__nc|ENSG00000165304|Q14680-3|MELK	REV__nc|ENSG00000165304|Q14680-3|MELK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2901000976562	2	521.306198	1040.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.977	1	29.991	29.491	30.491	0.014143								0	0	0	0.2362	1	5426	5426		10.824	4.1008	1		+		7090	17226	3714	3714	9585	9585					0.07916834225898128
EKNLHEKV	8	Unmodified	_EKNLHEKV_					0	0	0			REV__ENST00000573379.1_1_16:11036697-11036856:+|nuORF	REV__ENST00000573379.1_1_16:11036697-11036856:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.23974609375	2	498.777274	995.539994	0.24753	0.00012346	3.0554	0.0015239	3.3029	0.0016474	498.7789137685785	16.373	0.39025	16.373	16.184	16.574	0					21	13	3	0	0	0	0.34272	1	1323	1323		7.9102	0	1	30940	+		7091	22425	3715	3715	9586	9586					0.04204572300477594
EKNRKLFDLL	10	Unmodified	_EKNRKLFDLL_					0	0	0		ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;ENST00000587730.5_1_19:14520346-14520718:-|nuORF;ENST00000481456.1_1_6:31500550-31500844:-|nuORF;ENST00000588692.5_1_19:14519750-14520718:-|nuORF;ENST00000462256.5_1_6:31498213-31500844:-|nuORF;ENST00000482195.5_1_6:31499071-31508296:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A	ENSG00000198563|ENST00000396172|DDX39B	ENSG00000198563|ENST00000396172|DDX39B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.3735961914062	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.97	1	95.97	95.47	96.47	0								0	0	0	0.37739	1	25629	25629		3.2813	1.6287	1				7092	8089	3716	3716	9587	9587					0.10829323385632961
EKNVRKQESEM	11	Unmodified	_EKNVRKQESEM_					0	0	0			REV__nc|ENSG00000126777|Q86UP2-2|KTN1	REV__nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7845153808594	3	459.897881	1376.67181	0.239	0.00010991	-0.65715	-0.00030222	-0.41815	-0.00019231	459.8976554720348	17.139	0.81341	17.079	16.836	17.65	-0.060429					75	28	4	0	0	0	0.33334	1	1585	1585		1.2148	0.10508	1	327670	+		7093	15322	3717	3717	9588	9588					-0.0014561046473318129
EKPEPIHLS	9	Unmodified	_EKPEPIHLS_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7846069335938	2	525.284931	1048.55531	1.0812	0.00056796	1.4808	0.00077784	2.562	0.0013458	525.2872150612884	55.934	1.445	55.934	55.431	56.876	0					144	52	5	0	0	0	0.1669	1	13328	13328		28.487	3.0875	1	9516200			7094	818	3718	3718	9589	9589					0.03297439097673305
EKPEPIHLS	9	Unmodified	_EKPEPIHLS_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7841796875	2	525.284931	1048.55531	0.89288	0.00046902	1.9376	0.0010178	2.8305	0.0014868	525.2873980576968	55.868	1.3215	55.939	55.473	56.794	0.070885					135	48	5	0	0	0	0.1669	2	13350	13300;13350		28.487	3.0875	1	11288000			7095	818	3718	3718	9590;9591	9591					0.03297439097673305
EKPEPIHLS	9	Unmodified	_EKPEPIHLS_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2875366210938	2	525.284931	1048.55531	0.92581	0.00048631	1.4249	0.00074847	2.3507	0.0012348	525.2871769848095	55.922	1.0321	55.903	55.536	56.568	-0.019081					126	37	6	0	0	0	0.1669	2	13383	13383;13478		28.487	3.0875	1	13153000			7096	818	3718	3718	9592;9593	9592					0.03297439097673305
EKPLIRSQ	8	Unmodified	_EKPLIRSQ_					0	0	0		ENSG00000168476|ENST00000306306|REEP4	ENSG00000168476|ENST00000306306|REEP4	ENSG00000168476|ENST00000306306|REEP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8003234863281	2	485.787641	969.56073	0.21636	0.00010511	0.26747	0.00012993	0.48383	0.00023504	485.78757127383744	46.337	1.1454	46.397	45.734	46.879	0.059834					68	41	2	0	0	0	0.3398	1	10310	10310		26.268	2.2476	1	802440			7097	6277	3719	3719	9594	9594					0.07473162680139467
EKPLIRSQ	8	Unmodified	_EKPLIRSQ_					0	0	0		ENSG00000168476|ENST00000306306|REEP4	ENSG00000168476|ENST00000306306|REEP4	ENSG00000168476|ENST00000306306|REEP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8000793457031	2	485.787641	969.56073	0.17697	8.5972E-05	0.38667	0.00018784	0.56364	0.00027381	485.7876906742752	46.513	0.99739	46.568	45.83	46.827	0.054371					60	35	2	0	0	0	0.3398	1	10360	10360		26.268	3.5319	1	537040			7098	6277	3719	3719	9595	9595					0.07473162680139467
EKPRNKKL	8	Unmodified	_EKPRNKKL_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.8369445800781	2	506.816733	1011.61891	0.021753	1.1025E-05	0.4088	0.00020719	0.43056	0.00021821	506.81690277966834	12.177	0.6679	12.08	11.912	12.58	-0.096607					46	25	3	0	0	0	0.35375	1	109	109		24.674	5.2349	1	227710			7099	1113	3720	3720	9596	9596					0.11356844325405291
EKPVEKVQ	8	Unmodified	_EKPVEKVQ_					0	0	0		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7740783691406	2	478.7742	955.533846	-0.17075	-8.1751E-05	0.46562	0.00022293	0.29487	0.00014117	478.77410180133387	12.8	1.0982	12.8	12.669	13.767	0					70	38	3	0	0	0	0.45023	1	287	287		5.7319	0	1	135970			7100	438	3721	3721	9597	9597					0.0543005406894963
EKPVEKVQ	8	Unmodified	_EKPVEKVQ_					0	0	0		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.77398681640625	2	478.7742	955.533846	-0.076751	-3.6746E-05	1.0495	0.00050248	0.97277	0.00046574	478.77410369390975	12.902	0.89151	12.803	12.549	13.441	-0.099291					83	30	4	0	0	0	0.4396	1	305	305		9.3831	0	1	121400			7101	438	3721	3721	9598	9598					0.0543005406894963
EKQAFMFTEQY	11	Unmodified	_EKQAFMFTEQY_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.88629150390625	3	474.551711	1420.6333	0.43875	0.00020821	-0.00052657	-2.4988E-07	0.43822	0.00020796	474.5516823596829	20.441	0.65319	20.331	20.046	20.699	-0.11003					36	23	2	0	0	0	0.47786	1	2591	2591		1.0136	0.50762	1	244280			7102	6248	3722	3722	9599	9599					-0.06018916099242233
EKQAFMFTEQY	11	Unmodified	_EKQAFMFTEQY_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	474.551711	1420.6333	0.11971	5.6807E-05	0.32685	0.00015511	0.44655	0.00021191	474.55186279524406	20.228	0.43562	20.228	19.96	20.395	0	-0.021217	0.00036443	NaN	1.0136	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177390			7103	6248	3722	3722							-0.06018916099242233
EKQELQEWRQK	11	Unmodified	_EKQELQEWRQK_					0	0	0			REV__ENSG00000186710|ENST00000335621|CFAP73	REV__ENSG00000186710|ENST00000335621|CFAP73	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2907409667969	3	501.26344	1500.76849	-0.020761	-1.0407E-05	-1.6283	-0.00081622	-1.6491	-0.00082663	501.26251782415795	13.887	0.14319	13.821	13.774	13.917	-0.066068					6	4	2	0	0	0	0.33316	1	559	559		2.084	0.86914	1	26361	+		7104	18462	3723	3723	9600	9600					0.038137000866754533
EKQNPASKQ	9	Unmodified	_EKQNPASKQ_					0	0	0		ENSG00000167202|ENST00000300584|TBC1D2B;nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;nc|ENSG00000167202|Q9UPU7-3|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF	ENSG00000167202|ENST00000300584|TBC1D2B	ENSG00000167202|ENST00000300584|TBC1D2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8141479492188	2	515.269813	1028.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.349	1	12.349	11.849	12.849	0								0	0	0	0.22377	1	100	100		14.838	0	1				7105	6158	3724	3724	9601	9601					0.011950804324669662
EKQRAVVEF	9	Unmodified	_EKQRAVVEF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.2637329101562	2	553.303655	1104.59276	0.36812	0.00020368	1.7786	0.00098413	2.1468	0.0011878	553.3041850065564	70.516	0.66487	70.516	70.103	70.768	0					37	23	2	0	0	0	0.25526	1	17786	17786		7.9102	0	1	240530			7106	5186;12769	3725	3725	9602	9602					0.04464530363270569
EKQRAVVEF	9	Unmodified	_EKQRAVVEF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.303655	1104.59276	0.39157	0.00021666	1.6168	0.00089456	2.0083	0.0011112	553.3040294399057	70.544	0.61675	70.605	70.155	70.772	0.060783	0.043857	-0.00019201	NaN	7.9102	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267890			7107	5186;12769	3725	3725							0.04464530363270569
EKQRAVVEF	9	Unmodified	_EKQRAVVEF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	553.303655	1104.59276	0.37942	0.00020993	1.9267	0.0010661	2.3061	0.001276	553.3043953902089	70.587	0.72223	70.562	70.134	70.856	-0.024872	0.00091615	0.00015098	NaN	7.9102	41	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297460			7108	5186;12769	3725	3725							0.04464530363270569
EKQRQWKRKRR	11	Unmodified	_EKQRQWKRKRR_					0	0	0			REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF	REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3173828125	3	533.653596	1597.93896	0.040025	2.1359E-05	-1.2446	-0.00066419	-1.2046	-0.00064283	533.6528416292797	12.708	0.21288	12.609	12.46	12.673	-0.099291					10	6	2	0	0	0	0.33352	1	167	167		0	0	1	18984	+		7109	20264	3726	3726	9603	9603					0.16390700319470852
EKQRQWKRKRR	11	Unmodified	_EKQRQWKRKRR_					0	0	0			REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF	REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2830200195312	3	533.653596	1597.93896	0.03311	1.7669E-05	-1.1187	-0.00059698	-1.0856	-0.00057931	533.6530550010614	12.74	0.18583	12.672	12.548	12.734	-0.067496					9	5	2	0	0	0	0.33352	1	230	230		0	0	1	20648	+		7110	20264	3726	3726	9604	9604					0.16390700319470852
EKQRQWKRKRR	11	Unmodified	_EKQRQWKRKRR_					0	0	0			REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF	REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	533.653596	1597.93896	0.14139	7.5455E-05	-1.3915	-0.00074257	-1.2501	-0.00066711	533.9870003627075	12.67	0.14264	12.67	12.582	12.724	0	0.019551	-0.00032083	NaN	0	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36935	+		7111	20264	3726	3726							0.16390700319470852
EKQVVEIPPSL	11	Unmodified	_EKQVVEIPPSL_					0	0	0			REV__nc|ENSG00000084093|Q13127-4|REST	REV__nc|ENSG00000084093|Q13127-4|REST	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2038879394531	3	413.571211	1237.6918	0.31442	0.00013004	2.8501	0.0011787	3.1645	0.0013088	413.5730702051126	29.762	0.14478	29.774	29.685	29.83	0.012266					5	4	2	0	0	0	0.33122	1	5358	5358		7.0371	0.41363	1	46641	+		7112	13944	3727	3727	9605	9605					0.08246508537536101
EKQWQAAQEE	10	Unmodified	_EKQWQAAQEE_					0	0	0			REV__ENSG00000076382|ENST00000321765|SPAG5	REV__ENSG00000076382|ENST00000321765|SPAG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.87225341796875	3	416.194803	1245.56258	-0.4473	-0.00018616	0.41582	0.00017306	-0.031477	-1.3101E-05	416.1949896167151	35.218	0.6002	35.294	34.963	35.563	0.075306					55	21	3	0	0	0	0.31433	1	6938	6938		14.957	3.4393	1	491800	+		7113	13829	3728	3728	9606	9606					-0.05037873092555856
EKREFWLF	8	Unmodified	_EKREFWLF_					0	0	0		ENST00000395811.9_1_17:17091801-17091897:+|nuORF	ENST00000395811.9_1_17:17091801-17091897:+|nuORF	ENST00000395811.9_1_17:17091801-17091897:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.7901611328125	2	577.803291	1153.59203	0.23893	0.00013805	-1.2963	-0.00074899	-1.0573	-0.00061094	577.8025858154747	68.171	0.27991	68.171	67.97	68.25	0					17	10	2	0	0	0	0.41097	1	17137	17137		18.135	3.2967	1	110270			7114	10097	3729	3729	9607	9607					0.021377357142227993
EKRFANIDL	9	Unmodified	_EKRFANIDL_					0	0	0			REV__nc|ENSG00000084070|Q8WU79-3|SMAP2	REV__nc|ENSG00000084070|Q8WU79-3|SMAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.319580078125	2	553.303655	1104.59276	0.85871	0.00047513	-0.30089	-0.00016648	0.55782	0.00030864	553.3032620297298	47.035	0.82637	47.089	46.796	47.622	0.054375					50	22	3	0	0	0	0.21447	1	10591	10591		21.537	3.3906	1	1344500	+		7115	13942	3730	3730	9608	9608					0.04464530363270569
EKRKELGPLPD	11	Unmodified	_EKRKELGPLPD_					0	0	0		ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;PBRM1|p.V1336Sfs*48|1|0.44|ENSG00000163939|chr3:52563363-52563363|C/-|frameshift_variant;PBRM1|p.L1349Wfs*35|1|0.38|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;PBRM1|p.P1339Lfs*45|1|0.24|ENSG00000163939|chr3:52563353-52563353|G/-|frameshift_variant;PBRM1|p.Q1346Rfs*38|1|0.15|ENSG00000163939|chr3:52563332-52563332|T/-|frameshift_variant;PBRM1|p.D1403Lfs*18|1|0.2|ENSG00000163939|chr3:52561847-52561848|TC/-|frameshift_variant;PBRM1|p.P1491Rfs*48|1|0.62|ENSG00000163939|chr3:52554861-52554861|G/-|frameshift_variant;PBRM1|p.V1505Lfs*34|1|0.32|ENSG00000163939|chr3:52554823-52554823|G/-|frameshift_variant;PBRM1|p.P1534Hfs*5|1|0.44|ENSG00000163939|chr3:52554732-52554732|G/-|frameshift_variant;PBRM1|p.Q1511Sfs*28|1|0.49|ENSG00000163939|chr3:52554802-52554802|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.L1564Wfs*32|1|0.68|ENSG00000163939|chr3:52550627-52550627|A/-|frameshift_variant;PBRM1|p.F1594Lfs*2|1|0.68|ENSG00000163939|chr3:52550536-52550536|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-9|PBRM1;PBRM1|p.Q1560Nfs*37|1|0.46|ENSG00000163939|chr3:52550749-52550750|-/TT|frameshift_variant;PBRM1|p.S1607Qfs*5|1|0.34|ENSG00000163939|chr3:52550499-52550499|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;PBRM1|p.F1216Yfs*3|1|0.2|ENSG00000163939|chr3:52576585-52576586|-/AT|frameshift_variant;PBRM1|p.K1293Nfs*20|1|0.2|ENSG00000163939|chr3:52563490-52563490|T/-|frameshift_variant;PBRM1|p.V1235Cfs*34|1|0.23|ENSG00000163939|chr3:52564222-52564222|C/-|frameshift_variant;PBRM1|p.E1222Kfs*5|2|0.51|ENSG00000163939|chr3:52576568-52576568|C/-|frameshift_variant;PBRM1|p.E1214Rfs*6|1|0.35|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.I1197Ffs*21|1|0.4|ENSG00000163939|chr3:52576643-52576643|T/-|frameshift_variant;PBRM1|p.I1073Lfs*86|1|0.27|ENSG00000163939|chr3:52586595-52586595|T/-|frameshift_variant;PBRM1|p.M1038Sfs*121|1|0.03|ENSG00000163939|chr3:52587363-52587363|A/-|frameshift_variant;PBRM1|p.P1135Lfs*24|1|0.12|ENSG00000163939|chr3:52579183-52579183|G/-|frameshift_variant;PBRM1|p.N1126Gfs*15|1|0.24|ENSG00000163939|chr3:52586432-52586436|AAGTT/-|frameshift_variant;PBRM1|p.A1104Gfs*3|1|0.37|ENSG00000163939|chr3:52586501-52586502|-/C|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.4|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;PBRM1|p.L993Mfs*20|1|0.61|ENSG00000163939|chr3:52587496-52587499|ACAA/-|frameshift_variant;PBRM1|p.W992Mfs*12|1|0.27|ENSG00000163939|chr3:52587502-52587503|-/T|frameshift_variant;PBRM1|p.K909Nfs*6|1|0.29|ENSG00000163939|chr3:52603573-52603573|T/-|frameshift_variant;PBRM1|p.G1161Afs*57|1|0.31|ENSG00000163939|chr3:52579107-52579107|A/-|frameshift_variant;PBRM1|p.N832Ifs*23|1|0.36|ENSG00000163939|chr3:52609385-52609385|T/-|frameshift_variant;PBRM1|p.R836Lfs*12|1|0.26|ENSG00000163939|chr3:52609352-52609373|TGCTCTTGAAATAAATCAAGCC/-|frameshift_variant;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.Q869Sfs*6|1|0.26|ENSG00000163939|chr3:52603695-52603696|-/A|frameshift_variant;PBRM1|p.Y862*|1|0.5|ENSG00000163939|chr3:52603672-52603715|ACGAATTTTAATAAAAAACTGCTGAAGTTCTACTGCATCTTCAT/-|frameshift_variant;PBRM1|p.D748Mfs*27|2|0.36|ENSG00000163939|chr3:52609638-52609638|C/-|frameshift_variant;PBRM1|p.Y697*|1|0.43|ENSG00000163939|chr3:52609782-52609792|TAGTCAGATAG/-|frameshift_variant;PBRM1|p.N663Mfs*7|1|0.47|ENSG00000163939|chr3:52609892-52609892|T/-|frameshift_variant;PBRM1|p.K638Nfs*4|1|0.35|ENSG00000163939|chr3:52615361-52615361|T/-|frameshift_variant	ENSG00000163939|ENST00000707071|PBRM1	ENSG00000163939|ENST00000707071|PBRM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.8826904296875	2	641.361702	1280.70885	0.23989	0.00015386	-0.84284	-0.00054056	-0.60294	-0.00038671	641.3612429146289	16.312	0.51147	16.312	16.063	16.574	0					27	17	2	0	0	0	0.33329	1	1284	1284		1.0715	0.10919	1	47064			7116	5762	3731	3731	9609	9609					0.0797242914331946
EKRKELGPLPD	11	Unmodified	_EKRKELGPLPD_					0	0	0		ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;PBRM1|p.V1336Sfs*48|1|0.44|ENSG00000163939|chr3:52563363-52563363|C/-|frameshift_variant;PBRM1|p.L1349Wfs*35|1|0.38|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;PBRM1|p.P1339Lfs*45|1|0.24|ENSG00000163939|chr3:52563353-52563353|G/-|frameshift_variant;PBRM1|p.Q1346Rfs*38|1|0.15|ENSG00000163939|chr3:52563332-52563332|T/-|frameshift_variant;PBRM1|p.D1403Lfs*18|1|0.2|ENSG00000163939|chr3:52561847-52561848|TC/-|frameshift_variant;PBRM1|p.P1491Rfs*48|1|0.62|ENSG00000163939|chr3:52554861-52554861|G/-|frameshift_variant;PBRM1|p.V1505Lfs*34|1|0.32|ENSG00000163939|chr3:52554823-52554823|G/-|frameshift_variant;PBRM1|p.P1534Hfs*5|1|0.44|ENSG00000163939|chr3:52554732-52554732|G/-|frameshift_variant;PBRM1|p.Q1511Sfs*28|1|0.49|ENSG00000163939|chr3:52554802-52554802|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.L1564Wfs*32|1|0.68|ENSG00000163939|chr3:52550627-52550627|A/-|frameshift_variant;PBRM1|p.F1594Lfs*2|1|0.68|ENSG00000163939|chr3:52550536-52550536|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-9|PBRM1;PBRM1|p.Q1560Nfs*37|1|0.46|ENSG00000163939|chr3:52550749-52550750|-/TT|frameshift_variant;PBRM1|p.S1607Qfs*5|1|0.34|ENSG00000163939|chr3:52550499-52550499|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;PBRM1|p.F1216Yfs*3|1|0.2|ENSG00000163939|chr3:52576585-52576586|-/AT|frameshift_variant;PBRM1|p.K1293Nfs*20|1|0.2|ENSG00000163939|chr3:52563490-52563490|T/-|frameshift_variant;PBRM1|p.V1235Cfs*34|1|0.23|ENSG00000163939|chr3:52564222-52564222|C/-|frameshift_variant;PBRM1|p.E1222Kfs*5|2|0.51|ENSG00000163939|chr3:52576568-52576568|C/-|frameshift_variant;PBRM1|p.E1214Rfs*6|1|0.35|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.I1197Ffs*21|1|0.4|ENSG00000163939|chr3:52576643-52576643|T/-|frameshift_variant;PBRM1|p.I1073Lfs*86|1|0.27|ENSG00000163939|chr3:52586595-52586595|T/-|frameshift_variant;PBRM1|p.M1038Sfs*121|1|0.03|ENSG00000163939|chr3:52587363-52587363|A/-|frameshift_variant;PBRM1|p.P1135Lfs*24|1|0.12|ENSG00000163939|chr3:52579183-52579183|G/-|frameshift_variant;PBRM1|p.N1126Gfs*15|1|0.24|ENSG00000163939|chr3:52586432-52586436|AAGTT/-|frameshift_variant;PBRM1|p.A1104Gfs*3|1|0.37|ENSG00000163939|chr3:52586501-52586502|-/C|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.4|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;PBRM1|p.L993Mfs*20|1|0.61|ENSG00000163939|chr3:52587496-52587499|ACAA/-|frameshift_variant;PBRM1|p.W992Mfs*12|1|0.27|ENSG00000163939|chr3:52587502-52587503|-/T|frameshift_variant;PBRM1|p.K909Nfs*6|1|0.29|ENSG00000163939|chr3:52603573-52603573|T/-|frameshift_variant;PBRM1|p.G1161Afs*57|1|0.31|ENSG00000163939|chr3:52579107-52579107|A/-|frameshift_variant;PBRM1|p.N832Ifs*23|1|0.36|ENSG00000163939|chr3:52609385-52609385|T/-|frameshift_variant;PBRM1|p.R836Lfs*12|1|0.26|ENSG00000163939|chr3:52609352-52609373|TGCTCTTGAAATAAATCAAGCC/-|frameshift_variant;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.Q869Sfs*6|1|0.26|ENSG00000163939|chr3:52603695-52603696|-/A|frameshift_variant;PBRM1|p.Y862*|1|0.5|ENSG00000163939|chr3:52603672-52603715|ACGAATTTTAATAAAAAACTGCTGAAGTTCTACTGCATCTTCAT/-|frameshift_variant;PBRM1|p.D748Mfs*27|2|0.36|ENSG00000163939|chr3:52609638-52609638|C/-|frameshift_variant;PBRM1|p.Y697*|1|0.43|ENSG00000163939|chr3:52609782-52609792|TAGTCAGATAG/-|frameshift_variant;PBRM1|p.N663Mfs*7|1|0.47|ENSG00000163939|chr3:52609892-52609892|T/-|frameshift_variant;PBRM1|p.K638Nfs*4|1|0.35|ENSG00000163939|chr3:52615361-52615361|T/-|frameshift_variant	ENSG00000163939|ENST00000707071|PBRM1	ENSG00000163939|ENST00000707071|PBRM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.88232421875	2	641.361702	1280.70885	0.40347	0.00025877	-1.2738	-0.00081695	-0.8703	-0.00055818	641.3608003914528	16.241	0.40227	16.178	16.066	16.468	-0.062532					24	13	2	0	0	0	0.33329	1	1252	1252		1.0715	0.10919	1	41854			7117	5762	3731	3731	9610	9610					0.0797242914331946
EKRKQEQQ	8	Unmodified	_EKRKQEQQ_					0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.80126953125	2	537.288537	1072.56252	0.023543	1.2649E-05	3.7292	0.0020037	3.7528	0.0020163	537.7915222387167	13.922	0.4468	13.817	13.658	14.105	-0.10466					38	15	4	0	0	0	0.34198	1	547	547		10.824	2.9138	1	116160	+		7118	14997	3732	3732	9611	9611					0.029141716981030186
EKRMKERT	8	Unmodified	_EKRMKERT_					0	0	0			REV__ENST00000522957.1_1_8:53536344-53555381:-|nuORF	REV__ENST00000522957.1_1_8:53536344-53555381:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.815673828125	2	539.295307	1076.57606	0.13433	7.2446E-05	-2.0427	-0.0011016	-1.9084	-0.0010292	539.294663457842	12.841	0.25302	12.841	12.724	12.977	0					15	8	2	0	0	0	0.34198	1	277	277		10.824	2.2306	1	39754	+		7119	13469	3733	3733	9612	9612					0.04083706205688031
EKRMLSVFSTC	11	Unmodified	_EKRMLSVFSTC_					0	0	0		ENSG00000100084|ENST00000263208|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF	ENSG00000100084|ENST00000263208|HIRA	ENSG00000100084|ENST00000263208|HIRA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.8854064941406	3	434.217786	1299.63153	-0.41101	-0.00017847	2.5377	0.0011019	2.1267	0.00092345	434.2192798538386	14.303	1.5962	14.237	14.007	15.603	-0.066068					89	55	2	0	0	0	0.32951	1	716	716		10.315	5.9091	1	2627300			7120	1529	3734	3734	9613	9613					-0.006302483888475763
EKSFEMQRV	9	Unmodified	_EKSFEMQRV_					0	0	0		ENST00000488117.5_1_9:27566877-27566916:-|nuORF	ENST00000488117.5_1_9:27566877-27566916:-|nuORF	ENST00000488117.5_1_9:27566877-27566916:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.8538208007812	2	577.287148	1152.55974	-0.0053512	-3.0892E-06	0.74377	0.00042937	0.73842	0.00042628	577.2875101198831	13.156	0.20758	13.057	12.953	13.16	-0.099291					9	6	2	0	0	0	0.26145	1	339	339		2.0598	0.21551	1	30597			7121	11130	3735	3735	9614	9614					-0.010434197510903687
EKSFLFPV	8	Unmodified	_EKSFLFPV_					0	0	0			REV__nc|ENSG00000166436|O15016-2|TRIM66	REV__nc|ENSG00000166436|O15016-2|TRIM66	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.78466796875	2	483.768386	965.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.637	1	68.709	68.209	69.209	0.071938								0	0	0	0.33432	1	17298	17298		21.747	0.87544	1		+		7122	17321	3736	3736	9615	9615					0.03807857045626406
EKSLLLLK	8	Unmodified	_EKSLLLLK_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;ZZEF1|p.S2060Qfs*9|1|0.37|ENSG00000074755|chr17:4042557-4042557|A/-|frameshift_variant;ENST00000572426.5_1_17:3937307-3974023:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2946472167969	2	472.312961	942.611368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.814	1	60.814	60.314	61.314	0								0	0	0	0.33432	1	14898	14898		21.747	2.4897	1				7123	1026	3737	3737	9616	9616					0.13776692005149016
EKSMFHILSLF	11	Unmodified	_EKSMFHILSLF_					0	0	0		ENST00000014930.8_1_12:13128049-13128217:-|nuORF	ENST00000014930.8_1_12:13128049-13128217:-|nuORF	ENST00000014930.8_1_12:13128049-13128217:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.2313537597656	3	451.240808	1350.70059	0.02478	1.1182E-05	3.2889	0.0014841	3.3137	0.0014953	451.24269221472144	18.58	0.53216	18.58	18.332	18.864	0					42	18	3	0	0	0	0.44966	1	1934	1934		4.7159	1.6437	1	116490			7124	8769	3738	3738	9617	9617					0.03927158902342853
EKSQPSRK	8	Unmodified	_EKSQPSRK_					0	0	0		ENSG00000129173|ENST00000250024|E2F8	ENSG00000129173|ENST00000250024|E2F8	ENSG00000129173|ENST00000250024|E2F8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2825012207031	2	480.267073	958.519593	0.01597	7.6697E-06	0.065602	3.1507E-05	0.081572	3.9176E-05	480.26705561932744	23.548	0.75061	23.548	23.278	24.029	0					58	25	3	0	0	0	0.45307	1	3551	3551		4.756	0	1	378250			7125	3413	3739	3739	9618	9618					0.038674016406730516
EKSQSSRWR	9	Unmodified	_EKSQSSRWR_					0	0	0			REV__ENST00000284548.15_1_1:228401330-228402045:+|nuORF	REV__ENST00000284548.15_1_1:228401330-228402045:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.2990112304688	2	582.299436	1162.58432	0.14114	8.2185E-05	-0.9198	-0.0005356	-0.77866	-0.00045342	582.2988929270674	19.525	0.50191	19.525	19.294	19.796	0					36	17	3	0	0	0	0.3208	1	2243	2243		5.7319	0.32914	1	86115	+		7126	19730	3740	3740	9619	9619					0.009529764466606139
EKSRGQGADFI	11	Unmodified	_EKSRGQGADFI_					0	0	0		ENST00000296277.8_1_3:186845809-186857055:-|nuORF	ENST00000296277.8_1_3:186845809-186857055:-|nuORF	ENST00000296277.8_1_3:186845809-186857055:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.5545654296875	3	403.207043	1206.5993	-0.47536	-0.00019167	4.0492	0.0016327	3.5739	0.001441	403.20830796573307	14.015	0.23441	13.949	13.802	14.037	-0.066068					18	7	3	0	0	0	0.33122	1	569	569		7.0371	3.45	1	53009			7127	9181	3741	3741	9620	9620					0.00426423524004349
EKSSWEIHE	9	Unmodified	_EKSSWEIHE_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3027954101562	2	572.767103	1143.51965	0.25259	0.00014468	4.2898	0.0024571	4.5424	0.0026017	572.7695627963922	37.476	0.39253	37.569	37.448	37.84	0.093018					21	14	2	0	0	0	0.25323	1	7731	7731		10.074	0.6908	1	153640			7128	6706	3742	3742	9621	9621					-0.04636643149979136
EKSTILQGPHF	11	Unmodified	_EKSTILQGPHF_					0	0	0			REV__ENST00000437364.2_1_1:47357320-47357608:+|nuORF	REV__ENST00000437364.2_1_1:47357320-47357608:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.5596618652344	3	419.559305	1255.65609	0.080105	3.3609E-05	0.30522	0.00012806	0.38533	0.00016167	419.55957583910174	24.529	1.2388	24.456	24.085	25.324	-0.072559					136	42	4	0	0	0	0.28064	1	3789	3789		23.964	3.093	1	2770800	+		7129	21014	3743	3743	9622	9622					0.03848471080505078
EKTVLVALD	9	Unmodified	_EKTVLVALD_					0	0	0		nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A;KIF4B|p.N790Sfs*35|1|0.07|ENSG00000226650|chr5:155016227-155016228|-/GC|frameshift_variant;ENSG00000226650|ENST00000435029|KIF4B	nc|ENSG00000090889|O95239-2|KIF4A	nc|ENSG00000090889|O95239-2|KIF4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.24847412109375	2	494.289682	986.564812	-0.032024	-1.5829E-05	1.0746	0.00053117	1.0426	0.00051534	494.290093377381	34.376	0.42432	34.376	34.164	34.588	0					23	14	2	0	0	0	0.24471	1	6823	6823		12.241	2.1667	1	122070			7130	1391	3744	3744	9623	9623					0.07099207383191697
EKTVLVALD	9	Unmodified	_EKTVLVALD_					0	0	0		nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A;KIF4B|p.N790Sfs*35|1|0.07|ENSG00000226650|chr5:155016227-155016228|-/GC|frameshift_variant;ENSG00000226650|ENST00000435029|KIF4B	nc|ENSG00000090889|O95239-2|KIF4A	nc|ENSG00000090889|O95239-2|KIF4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2485046386719	2	494.289682	986.564812	0.15022	7.425E-05	0.83483	0.00041265	0.98505	0.0004869	494.2900463489949	34.208	0.42312	34.275	34.071	34.495	0.066704					23	14	2	0	0	0	0.24471	1	6761	6761		17.113	2.2746	1	171720			7131	1391	3744	3744	9624	9624					0.07099207383191697
EKVFSTPLD	9	Unmodified	_EKVFSTPLD_					0	0	0			REV__PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant	REV__PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8161010742188	2	518.27149	1034.52843	0.37024	0.00019188	-2.9383	-0.0015229	-2.5681	-0.001331	518.2700104676956	58.413	0.55987	58.504	58.342	58.902	0.091301					30	19	2	0	0	0	0.23784	1	14155	14155		13.906	3.0821	1	203630	+		7132	19181	3745	3745	9625	9625					0.012543304864948368
EKVFSTPLD	9	Unmodified	_EKVFSTPLD_					0	0	0			REV__PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant	REV__PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.81640625	2	518.27149	1034.52843	0.59726	0.00030954	-3.7747	-0.0019563	-3.1774	-0.0016468	518.7706450222882	58.552	0.52821	58.538	58.303	58.831	-0.014267					27	18	2	0	0	0	0.24471	1	14134	14134		17.113	2.2746	1	337720	+		7133	19181	3745	3745	9626	9626					0.012543304864948368
EKVKPSHSS	9	Unmodified	_EKVKPSHSS_					0	0	0			REV__ENSG00000213694|ENST00000358157|S1PR3	REV__ENSG00000213694|ENST00000358157|S1PR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7672424316406	2	499.766906	997.519259	0.52167	0.00026071	0.20645	0.00010318	0.72811	0.00036389	499.76693605880496	29.093	0.62346	29.093	28.817	29.441	0					50	22	3	0	0	0	0.11201	1	5160	5160		36.506	3.7205	1	468200	+		7134	19042	3746	3746	9627	9627					0.02039981920813716
EKVKPSHSS	9	Unmodified	_EKVKPSHSS_					0	0	0			REV__ENSG00000213694|ENST00000358157|S1PR3	REV__ENSG00000213694|ENST00000358157|S1PR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7671813964844	2	499.766906	997.519259	0.20722	0.00010356	0.66709	0.00033339	0.87431	0.00043695	499.76709500117727	29.087	0.77858	29.1	28.728	29.507	0.013474					59	27	3	0	0	0	0.11201	1	5149	5149		36.506	2.1045	1	522920	+		7135	19042	3746	3746	9628	9628					0.02039981920813716
EKVKVNGKT	9	Unmodified	_EKVKVNGKT_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.290771484375	2	501.800749	1001.58694	0.023444	1.1764E-05	0.46608	0.00023388	0.48952	0.00024564	501.80093207529455	13.769	0.30205	13.769	13.66	13.962	0					23	10	3	0	0	0	0.2451	1	496	496		15.847	0	1	109910			7136	5705	3747	3747	9629	9629					0.08621431851622674
EKVKVNGKT	9	Unmodified	_EKVKVNGKT_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2909240722656	2	501.800749	1001.58694	-0.025858	-1.2976E-05	0.11879	5.9608E-05	0.092929	4.6632E-05	501.8009600658501	13.842	0.37543	13.776	13.661	14.037	-0.066068					33	12	4	0	0	0	0.20167	1	515	515		29.082	2.1979	1	135280			7137	5705	3747	3747	9630	9630					0.08621431851622674
EKVMQHKQ	8	Unmodified	_EKVMQHKQ_					0	0	0			REV__ENST00000421999.7_2_3:99536761-99865852:+|nuORF	REV__ENST00000421999.7_2_3:99536761-99865852:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.8140869140625	2	514.271301	1026.52805	-0.041617	-2.1402E-05	0.59454	0.00030576	0.55292	0.00028435	514.2717825258994	12.478	0.49488	12.381	12.236	12.731	-0.096607					20	16	2	0	0	0	0.34247	1	120	120		8.5933	0	1	27072	+		7138	20870	3748	3748	9631	9631					0.01584632285630505
EKWKRVDKER	10	Unmodified	_EKWKRVDKER_					0	0	0			REV__SCAPER|p.A872Pfs*4|1|0.42|ENSG00000140386|chr15:76665685-76665685|T/-|frameshift_variant	REV__SCAPER|p.A872Pfs*4|1|0.42|ENSG00000140386|chr15:76665685-76665685|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7220764160156	3	458.59312	1372.75753	0.40233	0.0001845	-3.8134	-0.0017488	-3.4111	-0.0015643	458.59242954143195	20.096	0.27345	20.04	19.846	20.119	-0.055693					11	9	2	0	0	0	0.32137	1	2412	2412		1.7423	0.28716	1	21501	+		7139	16031	3749	3749	9632	9632					0.08606342503071573
EKWNMLLPTM	10	Unmodified	_EKWNMLLPTM_					0	0	0		ENST00000354193.4_1_11:22842744-22842939:-|nuORF	ENST00000354193.4_1_11:22842744-22842939:-|nuORF	ENST00000354193.4_1_11:22842744-22842939:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.5704650878906	3	421.547243	1261.6199	-0.18335	-7.7289E-05	0.094568	3.9865E-05	-0.088778	-3.7424E-05	421.54737836719164	16.999	0.41832	16.882	16.692	17.111	-0.11739					23	14	2	0	0	0	0.3183	1	1463	1463		8.4443	0	1	37857			7140	9592	3750	3750	9633	9633					-0.00044445412208915513
EKWYRLKR	8	Unmodified	_EKWYRLKR_					0	0	0			REV__ENST00000596769.1_1_19:53510963-53514048:+|nuORF	REV__ENST00000596769.1_1_19:53510963-53514048:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.845703125	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.24	1	119.22	118.72	119.72	-0.024147								0	0	0	0.38004	1	30788	30788		0.69038	0.088878	1		+		7141	22602	3751	3751	9634	9634					0.09028222108076989
ELAAKQVTI	9	Unmodified	_ELAAKQVTI_					0	0	0			REV__nc|ENSG00000151491|Q12929-2|EPS8	REV__nc|ENSG00000151491|Q12929-2|EPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7997741699219	2	486.78985	971.565146	0.52105	0.00025364	1.1829	0.00057584	1.704	0.00082949	486.7916191349198	83.268	0.96069	83.268	82.874	83.835	0					75	36	3	0	0	0	0.21303	1	21917	21917		21.747	4.8044	1	279470	+		7142	16543	3752	3752	9635	9635					0.07822627103041668
ELAAVIALKA	10	Unmodified	_ELAAVIALKA_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2856750488281	2	499.815867	997.617182	0.6511	0.00032543	-0.27042	-0.00013516	0.38069	0.00019027	499.8158294376215	52.931	0.47621	52.987	52.717	53.193	0.056259					26	16	2	0	0	0	0.31889	1	12408	12408		6.2058	0.97511	1	313910			7143	3956	3753	3753	9636	9636					0.11827790516781533
ELAELDRALGI	11	Unmodified	_ELAELDRALGI_					0	0	0		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3230590820312	2	600.335153	1198.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.89	1	105.89	105.39	106.39	-0.0027847								0	0	0	0.37382	1	28035	28035		2.9952	0.41776	1				7144	1245	3754	3754	9637	9637					0.0643705136067183
ELAESNELIN	10	Unmodified	_ELAESNELIN_					0	0	0			REV__nc|ENSG00000111674|P09104-2|ENO2	REV__nc|ENSG00000111674|P09104-2|ENO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.2902221679688	2	566.280043	1130.54553	0.74701	0.00042302	-1.3025	-0.00073755	-0.55545	-0.00031454	566.7806981232255	77.756	0.70953	77.811	77.541	78.251	0.055412					35	25	2	0	0	0	0.29092	1	20077	20077		21.537	2.175	1	668340	+		7145	22943	3755	3755	9638	9638					-0.01451793698356596
ELAESNELIN	10	Unmodified	_ELAESNELIN_					0	0	0			REV__nc|ENSG00000111674|P09104-2|ENO2	REV__nc|ENSG00000111674|P09104-2|ENO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.290283203125	2	566.280043	1130.54553	0.74701	0.00042302	-1.3025	-0.00073755	-0.55545	-0.00031454	566.7806981232255	77.756	0.70953	77.811	77.541	78.251	0.055412					35	25	2	0	0	0	0.30093	1	20031	20031		21.537	4.4241	1	668340	+		7146	22943	3755	3755	9639	9639					-0.01451793698356596
ELAESNELIN	10	Unmodified	_ELAESNELIN_					0	0	0			REV__nc|ENSG00000111674|P09104-2|ENO2	REV__nc|ENSG00000111674|P09104-2|ENO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.2902221679688	2	566.280043	1130.54553	0.77046	0.0004363	-1.0688	-0.00060526	-0.29837	-0.00016896	566.7808204341649	77.829	0.76425	77.797	77.51	78.275	-0.031334					39	27	2	0	0	0	0.30093	1	20052	20052		21.537	4.4241	1	1147400	+		7147	22943	3755	3755	9640	9640					-0.01451793698356596
ELAIDVWDWI	10	Unmodified	_ELAIDVWDWI_					0	0	0			REV__nc|ENSG00000288558|O95620-2|DUS4L	REV__nc|ENSG00000288558|O95620-2|DUS4L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.5904846191406	3	420.548406	1258.62339	-0.11813	-4.9681E-05	-3.118	-0.0013113	-3.2361	-0.001361	420.8800801952795	26.808	0.27996	26.808	26.673	26.953	0					15	9	2	0	0	0	0.32068	1	4450	4450		3.5871	0.26742	1	40224	+		7148	14492	3756	3756	9641	9641					0.0044226395766600035
ELAIIHALL	9	Unmodified	_ELAIIHALL_					0	0	0			REV__ENST00000521571.6_1_11:61607769-61608033:+|nuORF	REV__ENST00000521571.6_1_11:61607769-61608033:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.8105163574219	2	496.810585	991.606617	0.54107	0.00026881	-0.6175	-0.00030678	-0.076436	-3.7974E-05	496.8101644701702	63.971	0.51199	64.064	63.822	64.334	0.092884					34	18	2	0	0	0	0.24581	1	15912	15912		16.942	1.0951	1	218970	+		7149	15703	3757	3757	9642	9642					0.1104780786236006
ELAKRMNLQ	9	Unmodified	_ELAKRMNLQ_					0	0	0		ENSG00000169991|ENST00000455833|IFFO2	ENSG00000169991|ENST00000455833|IFFO2	ENSG00000169991|ENST00000455833|IFFO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.3350219726562	2	551.805508	1101.59646	0.090845	5.0129E-05	-0.072294	-3.9892E-05	0.018551	1.0237E-05	551.8055754618122	12.907	0.42868	12.808	12.7	13.129	-0.09929					31	14	4	0	0	0	0.25988	1	304	304		3.9444	3.9444	1	222910			7150	6411	3758	3758	9643	9643					0.04972876865485887
ELAKSAPAPK	10	Unmodified	_ELAKSAPAPK_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13	ENSG00000185130|ENST00000377401|H2BC13	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.811279296875	2	506.295299	1010.57605	0.63603	0.00032202	0.060215	3.0486E-05	0.69625	0.00035251	506.29520605534265	36.219	0.78056	36.305	36.059	36.839	0.086246					61	27	3	0	0	0	0.34053	1	7420	7420		14.405	1.5328	1	1273800			7151	7510	3759	3759	9644	9644					0.07118029477328491
ELAKVSEELCS	11	Unmodified	_ELAKVSEELCS_					0	0	0		KIAA0408|p.Q379Nfs*7|1|0.05|ENSG00000189367|chr6:127447180-127447184|TTCTG/-|frameshift_variant;nc|ENSG00000189367|Q6ZU52-2|KIAA0408;ENST00000368281.1_1_6:127765256-127771512:-|nuORF;ENSG00000189367|ENST00000483725|KIAA0408	KIAA0408|p.Q379Nfs*7|1|0.05|ENSG00000189367|chr6:127447180-127447184|TTCTG/-|frameshift_variant	KIAA0408|p.Q379Nfs*7|1|0.05|ENSG00000189367|chr6:127447180-127447184|TTCTG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.7684326171875	2	604.297378	1206.5802	0.35032	0.00021169	0.65238	0.00039423	1.0027	0.00060593	604.2977960796863	61.526	1.5113	61.526	61.207	62.718	0					143	56	4	0	0	0	0.31791	1	15162	15162		20.415	0	1	804770			7152	7815	3760	3760	9645	9645					-0.014822938819179399
ELAKVSEELCS	11	Unmodified	_ELAKVSEELCS_					0	0	0		KIAA0408|p.Q379Nfs*7|1|0.05|ENSG00000189367|chr6:127447180-127447184|TTCTG/-|frameshift_variant;nc|ENSG00000189367|Q6ZU52-2|KIAA0408;ENST00000368281.1_1_6:127765256-127771512:-|nuORF;ENSG00000189367|ENST00000483725|KIAA0408	KIAA0408|p.Q379Nfs*7|1|0.05|ENSG00000189367|chr6:127447180-127447184|TTCTG/-|frameshift_variant	KIAA0408|p.Q379Nfs*7|1|0.05|ENSG00000189367|chr6:127447180-127447184|TTCTG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.7684936523438	2	604.297378	1206.5802	0.17677	0.00010682	0.81515	0.00049259	0.99191	0.00059941	604.2979112157925	61.494	1.2236	61.591	61.273	62.497	0.096985					150	44	4	0	0	0	0.2973	1	15128	15128		26.268	0	1	802300			7153	7815	3760	3760	9646	9646					-0.014822938819179399
ELANRMSLFY	10	Unmodified	_ELANRMSLFY_					0	0	0		ENST00000523288.5_1_8:130864395-130891707:-|nuORF;ENSG00000153310|ENST00000694912|CYRIB;ENST00000517801.5_1_8:130863079-130874553:-|nuORF;nc|ENSG00000153310|Q9NUQ9-2|CYRIB	ENST00000523288.5_1_8:130864395-130891707:-|nuORF	ENST00000523288.5_1_8:130864395-130891707:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.31689453125	2	622.310623	1242.60669	0.084685	5.27E-05	0.17889	0.00011133	0.26358	0.00016403	622.30943591155	64.774	1.7494	64.867	64.066	65.815	0.09288					240	64	6	0	0	0	0.3001	1	16038	16038		20.415	0	1	5693100			7154	5073	3761	3761	9647	9647					-0.0049056019993258815
ELAPIRLEIP	10	Unmodified	_ELAPIRLEIP_					0	0	0			REV__ENST00000452400.6_1_8:71024612-71024843:-|nuORF	REV__ENST00000452400.6_1_8:71024612-71024843:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8428955078125	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.59	1	116.59	116.09	117.09	0								0	0	0	0.38166	1	30176	30176		1.4819	0.15237	1		+		7155	21127	3762	3762	9648	9648					0.10690847091268552
ELAQLKEQGLL	11	Unmodified	_ELAQLKEQGLL_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.8822631835938	2	621.358628	1240.7027	0.29214	0.00018152	0.043653	2.7124E-05	0.33579	0.00020865	621.3585963957225	73.119	0.91076	73.119	72.827	73.738	0					91	32	4	0	0	0	0.32951	1	18773	18773		9.544	2.4423	1	2067700			7156	6706	3763	3763	9649	9649					0.09197910911802865
ELAQLKEQGLL	11	Unmodified	_ELAQLKEQGLL_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.8821411132812	2	621.358628	1240.7027	0.28786	0.00017887	-0.035475	-2.2042E-05	0.25239	0.00015682	621.3585530689866	73.141	0.89815	73.111	72.846	73.744	-0.029305					97	32	4	0	0	0	0.3287	1	18769	18769		7.1017	2.2047	1	2092600			7157	6706	3763	3763	9650	9650					0.09197910911802865
ELARLQRKH	9	Unmodified	_ELARLQRKH_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8431396484375	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.07	1	111.07	110.57	111.57	0								0	0	0	0.2646	1	28915	28915		1.6526	0	1				7158	8675	3764	3764	9651	9651					0.10422436476983421
ELASKKSLP	9	Unmodified	_ELASKKSLP_					0	0	0		nc|ENSG00000131373|Q9UJ83-3|HACL1;nc|ENSG00000131373|Q9UJ83-4|HACL1;nc|ENSG00000131373|Q9UJ83-2|HACL1;ENSG00000131373|ENST00000321169|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7771301269531	2	486.78985	971.565146	0.055868	2.7196E-05	0.13386	6.5163E-05	0.18973	9.2359E-05	486.78980167457587	27.371	0.60174	27.349	26.985	27.587	-0.021412					47	20	3	0	0	0	0.22188	1	4705	4705		20.454	0	1	252870			7159	3555	3765	3765	9652	9652					0.07822627103041668
ELASVFTELS	10	Unmodified	_ELASVFTELS_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.773193359375	2	548.282054	1094.54956	0.49298	0.00027029	1.6368	0.00089744	2.1298	0.0011677	548.2826854785345	29.08	0.71537	29.092	28.586	29.302	0.012266					34	24	2	0	0	0	0.3641	1	5159	5159		10.074	0	1	84522	+		7160	16298	3766	3766	9653	9653					0.006062957953417936
ELCIVGFKGLH	11	Unmodified	_ELCIVGFKGLH_					0	0	0			REV__ENST00000469911.1_1_3:182328694-182329198:+|nuORF	REV__ENST00000469911.1_1_3:182328694-182329198:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8983154296875	2	608.331359	1214.64816	0.53313	0.00032432	0.55807	0.00033949	1.0912	0.00066381	608.331264606193	57.095	0.50039	57.095	56.823	57.323	0					32	18	2	0	0	0	0.33236	1	13791	13791		1.0715	0	1	481860	+		7161	16335	3767	3767	9654	9654					0.049426205594045314
ELCQKYPDL	9	Unmodified	_ELCQKYPDL_					0	0	0		nc|ENSG00000165195|P37287-3|PIGA;ENSG00000165195|ENST00000333590|PIGA	nc|ENSG00000165195|P37287-3|PIGA	nc|ENSG00000165195|P37287-3|PIGA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.770751953125	2	554.7708	1107.52705	0.17843	9.8986E-05	-0.049824	-2.7641E-05	0.1286	7.1345E-05	554.7707607246712	65.485	0.94893	65.573	65.164	66.113	0.088882					83	34	4	0	0	0	0.20167	1	16340	16340		29.082	8.628	1	1163600			7162	5937	3768	3768	9655	9655					-0.022416268739334555
ELCQKYPDL	9	Unmodified	_ELCQKYPDL_					0	0	0		nc|ENSG00000165195|P37287-3|PIGA;ENSG00000165195|ENST00000333590|PIGA	nc|ENSG00000165195|P37287-3|PIGA	nc|ENSG00000165195|P37287-3|PIGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.7708740234375	2	554.7708	1107.52705	0.36411	0.000202	-0.17238	-9.5631E-05	0.19173	0.00010637	554.770597571088	65.57	1.3936	65.558	65.148	66.541	-0.01133					93	50	3	0	0	0	0.11461	1	16380	16380		36.127	9.2434	1	1231400			7163	5937	3768	3768	9656	9656					-0.022416268739334555
ELCRHIEA	8	Unmodified	_ELCRHIEA_					0	0	0		ENSG00000131379|ENST00000253697|C3orf20;nc|nan|Q8ND61-2|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8006286621094	2	485.742376	969.4702	0.30739	0.00014931	0.085152	4.1362E-05	0.39254	0.00019067	485.74297829266544	87.133	0.49467	87.22	86.987	87.481	0.08709					36	21	2	0	0	0	0.34337	1	22890	22890		5.2307	0	1	138650			7164	3559	3769	3769	9657	9657					-0.015756296397853475
ELCRHIEA	8	Unmodified	_ELCRHIEA_					0	0	0		ENSG00000131379|ENST00000253697|C3orf20;nc|nan|Q8ND61-2|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	485.742376	969.4702	0.41359	0.0002009	0.43904	0.00021326	0.85263	0.00041416	485.7429393476686	87.272	0.53227	87.267	86.965	87.498	-0.0056229	0.023451	0.00010447	NaN	2.3027	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129420			7165	3559	3769	3769							-0.015756296397853475
ELCSGLRYIEA	11	Unmodified	_ELCSGLRYIEA_					0	0	0			REV__nc|ENSG00000106948|Q7Z591-3|AKNA	REV__nc|ENSG00000106948|Q7Z591-3|AKNA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.5683288574219	3	418.544667	1252.61217	-0.63904	-0.00026747	-2.7724	-0.0011604	-3.4114	-0.0014278	418.54422432324606	34.341	0.16894	34.408	34.344	34.513	0.06636					6	5	2	0	0	0	0.33236	1	6764	6764		4.4062	0.56024	1	51224	+		7166	14539	3770	3770	9658	9658					-0.004028814081038945
ELDEHFLY	8	Unmodified	_ELDEHFLY_					0	0	0			REV__ENST00000600795.1_1_11:77884868-77885513:+|nuORF	REV__ENST00000600795.1_1_11:77884868-77885513:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.266357421875	2	533.248015	1064.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.111	1	65.111	64.611	65.611	0								0	0	0	0.31676	1	16225	16225		26.341	0.94196	1		+		7167	22629	3771	3771	9659	9659					-0.048185290646415524
ELDKCHHL	8	Unmodified	_ELDKCHHL_					0	0	0		nc|ENSG00000180176|P07101-6|TH;nc|ENSG00000180176|P07101-5|TH;TH|p.Q504Rfs*21|1|0.22|ENSG00000180176|chr11:2164310-2164310|G/-|frameshift_variant;ENSG00000180176|ENST00000352909|TH;nc|ENSG00000180176|P07101-4|TH;nc|ENSG00000180176|P07101-2|TH;nc|ENSG00000180176|P07101|TH;ENST00000469226.1_1_11:2189094-2189913:-|nuORF;ENST00000381168.7_1_11:2187868-2190906:-|nuORF	nc|ENSG00000180176|P07101-6|TH	nc|ENSG00000180176|P07101-6|TH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.76953125	2	497.742376	993.4702	0.10641	5.2967E-05	-4.2261	-0.0021035	-4.1196	-0.0020505	497.7405274589667	15.59	0.36641	15.526	15.333	15.7	-0.064413					17	11	2	0	0	0	0.344	1	1116	1116		2.5775	0	1	24240			7168	7168	3772	3772	9660	9660					-0.02679629639783343
ELDQERKARYA	11	Unmodified	_ELDQERKARYA_					0	0	0		nc|ENSG00000188779|P84550-2|SKOR1;nc|ENSG00000188779|P84550-3|SKOR1;ENSG00000188779|ENST00000380035|SKOR1	nc|ENSG00000188779|P84550-2|SKOR1	nc|ENSG00000188779|P84550-2|SKOR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.5675964355469	3	460.240635	1377.70008	-0.051094	-2.3516E-05	2.6481	0.0012188	2.597	0.0011952	460.24171191411517	61.89	0.3239	61.89	61.727	62.051	0					15	11	2	0	0	0	0.33122	1	15284	15284		7.0371	0.41363	1	168380			7169	7773	3773	3773	9661	9661					0.026334555068615373
ELDWIIRK	8	Unmodified	_ELDWIIRK_					0	0	0			REV__ENST00000493787.5_1_10:75082782-75108210:-|nuORF	REV__ENST00000493787.5_1_10:75082782-75108210:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2921752929688	2	536.811116	1071.60768	0.42639	0.00022889	-0.79587	-0.00042723	-0.36948	-0.00019834	536.8106510938891	37.327	0.78349	37.414	37.09	37.873	0.087406					40	27	2	0	0	0	0.43302	1	7634	7634		11.64	0	1	649270	+		7170	16726	3774	3774	9662	9662					0.07474022231281197
ELEASGHGFR	10	Unmodified	_ELEASGHGFR_					0	0	0			REV__ENSG00000183655|ENST00000337975|KLHL25	REV__ENSG00000183655|ENST00000337975|KLHL25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.270751953125	2	551.767437	1101.52032	-0.069244	-3.8207E-05	0.35428	0.00019548	0.28503	0.00015727	551.7674938872584	12.394	0.29516	12.326	12.196	12.491	-0.06806					13	9	2	0	0	0	0.40262	1	86	86		2.9952	1.151	1	23559	+		7171	18275	3775	3775	9663	9663					-0.026378037102631424
ELELRLHHL	9	Unmodified	_ELELRLHHL_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3338012695312	2	580.332747	1158.65094	0.63073	0.00036603	0.79965	0.00046406	1.4304	0.0008301	580.3335061527871	45.86	0.61052	45.86	45.501	46.111	0					41	21	3	0	0	0	0.13748	1	10287	10287		32.786	8.9959	1	578220	+		7172	15472	3776	3776	9664	9664					0.07796212008565817
ELEPLFCEI	9	Unmodified	_ELEPLFCEI_					0	0	0			REV__L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|76|3|sense	REV__L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|76|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8370361328125	2	546.767726	1091.5209	0.68417	0.00037408	0.37742	0.00020636	1.0616	0.00058044	546.7680961046176	72.586	0.5959	72.639	72.352	72.948	0.053833					27	21	2	0	0	0	0.24688	1	18475	18475		14.838	2.3067	1	167970	+		7173	22791	3777	3777	9665	9665					-0.021201451054594145
ELERFERRAL	10	Unmodified	_ELERFERRAL_					0	0	0		nc|ENSG00000125503|Q9BZL4-5|PPP1R12C;nc|ENSG00000125503|Q9BZL4-2|PPP1R12C;nc|ENSG00000125503|Q9BZL4-3|PPP1R12C;nc|ENSG00000125503|Q9BZL4-4|PPP1R12C;ENSG00000125503|ENST00000263433|PPP1R12C;ENST00000590268.1_1_19:55602842-55603850:-|nuORF	nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.16119384765625	3	440.245721	1317.71533	-0.096483	-4.2476E-05	-0.4285	-0.00018864	-0.52498	-0.00023112	440.2454149402722	18.36	0.57026	18.242	18.012	18.582	-0.11739					42	19	3	0	0	0	0.32095	1	1965	1965		3.0723	1.33	1	97895			7174	3212	3778	3778	9666	9666					0.06918367094726818
ELERFERRAL	10	Unmodified	_ELERFERRAL_					0	0	0		nc|ENSG00000125503|Q9BZL4-5|PPP1R12C;nc|ENSG00000125503|Q9BZL4-2|PPP1R12C;nc|ENSG00000125503|Q9BZL4-3|PPP1R12C;nc|ENSG00000125503|Q9BZL4-4|PPP1R12C;ENSG00000125503|ENST00000263433|PPP1R12C;ENST00000590268.1_1_19:55602842-55603850:-|nuORF	nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	440.245721	1317.71533	-0.0040118	-1.7662E-06	-0.46947	-0.00020668	-0.47349	-0.00020845	440.2454128750261	18.241	0.48922	18.241	17.93	18.419	0	-0.018239	-3.7958E-06	NaN	3.0723	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104070			7175	3212	3778	3778							0.06918367094726818
ELERQQPRA	9	Unmodified	_ELERQQPRA_					0	0	0			REV__ENST00000506259.5_1_5:177631574-177631742:+|nuORF	REV__ENST00000506259.5_1_5:177631574-177631742:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8023681640625	2	563.801811	1125.58907	0.1658	9.348E-05	0.24736	0.00013946	0.41316	0.00023294	563.8018823030312	16.392	0.64841	16.278	16.075	16.723	-0.11434					49	22	3	0	0	0	0.33508	1	1369	1369		3.5965	0.31518	1	103970	+		7176	21749	3779	3779	9667	9667					0.031298605894335196
ELEYDDESYSY	11	Unmodified	_ELEYDDESYSY_					0	0	0		nc|ENSG00000099139|Q92824|PCSK5;ENSG00000099139|ENST00000674117|PCSK5	nc|ENSG00000099139|Q92824|PCSK5	nc|ENSG00000099139|Q92824|PCSK5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2627258300781	3	471.517389	1411.53034	0.21467	0.00010122	-0.31945	-0.00015062	-0.10478	-4.9405E-05	471.5171568912776	38.263	0.55759	38.361	38.064	38.622	0.097527					30	19	2	0	0	0	0.33334	1	7996	7996		1.2148	0.10508	1	142210			7177	1475	3780	3780	9668	9668					-0.15896750076876742
ELEYFEHEL	9	Unmodified	_ELEYFEHEL_					0	0	0			REV__ENSG00000154309|ENST00000675850|DISP1	REV__ENSG00000154309|ENST00000675850|DISP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.5545654296875	3	403.520516	1207.53972	-0.49071	-0.00019801	-1.4397	-0.00058093	-1.9304	-0.00077894	403.51956915117813	13.752	0.56294	13.686	13.444	14.007	-0.066068					28	19	2	0	0	0	0.26145	1	569	569		1.0715	0	1	119740	+		7178	16659	3781	3781	9669	9669					-0.055748922100292475
ELFDVKNAF	9	Unmodified	_ELFDVKNAF_					0	0	0		nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE;nc|ENSG00000105669|O14579-2|COPE;ENST00000599964.1_1_19:19022134-19030157:-|nuORF;ENST00000597646.5_1_19:19021902-19030157:-|nuORF	nc|ENSG00000105669|O14579-3|COPE	nc|ENSG00000105669|O14579-3|COPE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.3290405273438	2	541.779482	1081.54441	0.42733	0.00023152	2.2237	0.0012048	2.6511	0.0014363	541.7819042244098	47.225	0.13215	47.278	47.168	47.3	0.052574					6	4	2	0	0	0	0.24471	1	10694	10694		12.241	0	1	209270			7179	2005	3782	3782	9670	9670					0.0069003672338112665
ELFEENEEEDE	11	Unmodified	_ELFEENEEEDE_					0	0	0		ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.787841796875	3	471.184298	1410.53106	0.11641	5.4852E-05	0.22542	0.00010622	0.34184	0.00016107	471.1845967259056	17.745	0.34169	17.685	17.502	17.844	-0.060429					22	11	2	0	0	0	0.33351	1	1682	1682		0.094841	0	1	52056			7180	5931	3783	3783	9671	9671					-0.15777955427824963
ELFELHEL	8	Unmodified	_ELFELHEL_					0	0	0			REV__nc|ENSG00000101333|Q15147-2|PLCB4	REV__nc|ENSG00000101333|Q15147-2|PLCB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.775390625	2	515.266207	1028.51786	0.3258	0.00016788	-2.659	-0.0013701	-2.3332	-0.0012022	515.2645442323164	21.72	0.60181	21.62	21.392	21.994	-0.10034					33	21	2	0	0	0	0.34353	1	3013	3013		4.756	1.1595	1	149840	+		7181	14263	3784	3784	9672	9672					0.004743478320506256
ELFENARPF	9	Unmodified	_ELFENARPF_					0	0	0			REV__ENSG00000130032|ENST00000674457|PRRG3	REV__ENSG00000130032|ENST00000674457|PRRG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7955322265625	2	561.782556	1121.55056	0.26241	0.00014742	-2.0721	-0.0011641	-1.8097	-0.0010167	561.7813081184811	80.277	0.64869	80.277	80.009	80.657	0					59	23	3	0	0	0	0.23007	1	20883	20883		19.257	2.3147	1	999240	+		7182	15437	3785	3785	9673	9673					-0.005354450451022785
ELFERIKK	8	Unmodified	_ELFERIKK_					0	0	0		nc|ENSG00000100784|O75582-2|RPS6KA5;nc|ENSG00000100784|O75582-3|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5	nc|ENSG00000100784|O75582-2|RPS6KA5	nc|ENSG00000100784|O75582-2|RPS6KA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8063354492188	2	531.818941	1061.62333	0.33375	0.00017749	-0.39428	-0.00020969	-0.060533	-3.2192E-05	531.8186351503967	18.616	1.1425	18.616	17.835	18.978	0					57	39	2	0	0	0	0.34039	1	1872	1872		15.847	3.3156	1	61178			7183	1631	3786	3786	9674	9674					0.09498308748334239
ELFFKDDAN	9	Unmodified	_ELFFKDDAN_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.759521484375	2	549.758746	1097.50294	0.8995	0.00049451	0.85524	0.00047017	1.7547	0.00096468	549.7590490981614	78.32	1.6383	78.289	77.542	79.181	-0.030426					140	63	3	0	0	0	0.24688	1	20230	20230		14.838	0	1	430010			7184	3349	3787	3787	9675	9675					-0.04191144035939942
ELFHPDTF	8	Unmodified	_ELFHPDTF_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.265869140625	2	503.23745	1004.46035	0.36153	0.00018193	-0.0508	-2.5564E-05	0.31073	0.00015637	503.23735954567076	68.033	0.49924	68.111	67.864	68.363	0.078049					28	17	2	0	0	0	0.31934	1	17100	17100		24.674	2.9272	1	185500			7185	7673	3788	3788	9676	9676					-0.041704943735112465
ELFHRLSK	8	Unmodified	_ELFHRLSK_					0	0	0			REV__ENSG00000146966|ENST00000496613|DENND2A	REV__ENSG00000146966|ENST00000496613|DENND2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2498779296875	2	515.295633	1028.57671	0.12557	6.4706E-05	-4.1208	-0.0021234	-3.9953	-0.0020587	515.2933723343641	27.188	0.24833	27.176	27.042	27.29	-0.01156					12	8	2	0	0	0	0.3408	1	4565	4565		10.074	2.1638	1	45191	+		7186	16367	3789	3789	9677	9677					0.06356868917032443
ELFIVVDKER	10	Unmodified	_ELFIVVDKER_					0	0	0		ADAM9|p.N283Rfs*22|1|0.05|ENSG00000168615|chr8:39023256-39023257|-/AA|frameshift_variant;ADAM9|p.N283Kfs*23|1|0.05|ENSG00000168615|chr8:39023257-39023258|-/AAAGAAATAAAAGTATATA|frameshift_variant;nc|ENSG00000168615|Q13443-2|ADAM9;ENSG00000168615|ENST00000487273|ADAM9	ADAM9|p.N283Rfs*22|1|0.05|ENSG00000168615|chr8:39023256-39023257|-/AA|frameshift_variant	ADAM9|p.N283Rfs*22|1|0.05|ENSG00000168615|chr8:39023256-39023257|-/AA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.1888427734375	3	416.571322	1246.69214	0.33835	0.00014095	-0.82239	-0.00034258	-0.48403	-0.00020163	416.57105584399636	45.1	0.47528	45.168	44.894	45.37	0.068569					25	16	2	0	0	0	0.31364	1	10010	10010		15.739	11.023	1	159280			7187	9	3790	3790	9678	9678					0.0786592825736534
ELFIVVDKER	10	Unmodified	_ELFIVVDKER_					0	0	0		ADAM9|p.N283Rfs*22|1|0.05|ENSG00000168615|chr8:39023256-39023257|-/AA|frameshift_variant;ADAM9|p.N283Kfs*23|1|0.05|ENSG00000168615|chr8:39023257-39023258|-/AAAGAAATAAAAGTATATA|frameshift_variant;nc|ENSG00000168615|Q13443-2|ADAM9;ENSG00000168615|ENST00000487273|ADAM9	ADAM9|p.N283Rfs*22|1|0.05|ENSG00000168615|chr8:39023256-39023257|-/AA|frameshift_variant	ADAM9|p.N283Rfs*22|1|0.05|ENSG00000168615|chr8:39023256-39023257|-/AA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.1891174316406	3	416.571322	1246.69214	0.3146	0.00013105	-0.57371	-0.00023899	-0.25911	-0.00010794	416.5710867553271	45.07	0.48301	45.146	44.935	45.418	0.075047					33	17	3	0	0	0	0.31329	1	10038	10038		17.049	9.9469	1	286220			7188	9	3790	3790	9679	9679					0.0786592825736534
ELFRKLKF	8	Unmodified	_ELFRKLKF_					0	0	0			REV__ENST00000367097.7_1_6:158931717-158931981:+|nuORF	REV__ENST00000367097.7_1_6:158931717-158931981:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8321533203125	2	540.831852	1079.64915	0.60207	0.00032562	-0.60015	-0.00032458	0.0019264	1.0419E-06	540.8324534392195	68.627	2.7535	68.608	68.223	70.976	-0.01915					310	98	6	0	0	0	0.42446	1	17720	17720		14.582	1.5392	1	81405000	+		7189	20305	3791	3791	9680	9680					0.11251202990615639
ELFSSHFPF	9	Unmodified	_ELFSSHFPF_					0	0	0			REV__ENST00000275767.3_1_7:134832829-134849312:+|nuORF	REV__ENST00000275767.3_1_7:134832829-134849312:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3084716796875	2	555.766374	1109.5182	0.30071	0.00016713	-2.0253	-0.0011256	-1.7246	-0.00095845	555.7652686322185	79.895	0.40993	79.895	79.714	80.124	0					20	14	2	0	0	0	0.21905	1	20782	20782		23.148	1.4018	1	162640	+		7190	19691	3792	3792	9681	9681					-0.032182324481027536
ELFSSHFPF	9	Unmodified	_ELFSSHFPF_					0	0	0			REV__ENST00000275767.3_1_7:134832829-134849312:+|nuORF	REV__ENST00000275767.3_1_7:134832829-134849312:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3079223632812	2	555.766374	1109.5182	0.32641	0.00018141	-1.939	-0.0010776	-1.6125	-0.0008962	555.7654090251935	79.889	0.35592	79.95	79.723	80.079	0.061409					18	12	2	0	0	0	0.21905	1	20755	20755		16.942	5.302	1	127650	+		7191	19691	3792	3792	9682	9682					-0.032182324481027536
ELGEIKSGH	9	Unmodified	_ELGEIKSGH_					0	0	0			REV__nc|ENSG00000053747|Q16787-3|LAMA3	REV__nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.77447509765625	2	485.253631	968.49271	-0.072848	-3.535E-05	1.0262	0.00049796	0.95334	0.00046261	485.2541055769542	13.852	0.26131	13.786	13.687	13.949	-0.066068					13	8	2	0	0	0	0.25779	1	549	549		6.2058	0.97511	1	22700	+		7192	13579	3793	3793	9683	9683					0.0072029302948521945
ELGKYQDLQ	9	Unmodified	_ELGKYQDLQ_					0	0	0		chr2:69815055-69816101|111|93.08|0.43|7.77|+|2|TE_info:MLT2B4,MLT2B4_dup449,ERVL,LTR,donor,-,69814795,69815055|None,ANXA4|1	chr2:69815055-69816101|111|93.08|0.43|7.77|+|2|TE_info:MLT2B4,MLT2B4_dup449,ERVL,LTR,donor,-,69814795,69815055|None,ANXA4|1	chr2:69815055-69816101|111|93.08|0.43|7.77|+|2|TE_info:MLT2B4,MLT2B4_dup449,ERVL,LTR,donor,-,69814795,69815055|None,ANXA4|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7631225585938	2	547.279846	1092.54514	0.23505	0.00012864	0.31398	0.00017183	0.54903	0.00030047	547.2799798671953	42.163	0.80566	42.163	41.9	42.706	0					50	28	2	0	0	0	0.23007	1	9249	9249		19.257	3.4098	1	3675600			7193	155	3794	3794	9684	9684					0.002568313724395921
ELGKYQDLQ	9	Unmodified	_ELGKYQDLQ_					0	0	0		chr2:69815055-69816101|111|93.08|0.43|7.77|+|2|TE_info:MLT2B4,MLT2B4_dup449,ERVL,LTR,donor,-,69814795,69815055|None,ANXA4|1	chr2:69815055-69816101|111|93.08|0.43|7.77|+|2|TE_info:MLT2B4,MLT2B4_dup449,ERVL,LTR,donor,-,69814795,69815055|None,ANXA4|1	chr2:69815055-69816101|111|93.08|0.43|7.77|+|2|TE_info:MLT2B4,MLT2B4_dup449,ERVL,LTR,donor,-,69814795,69815055|None,ANXA4|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7633056640625	2	547.279846	1092.54514	0.62156	0.00034017	0.92749	0.0005076	1.5491	0.00084777	547.2798301641003	41.795	0.76685	41.885	41.725	42.492	0.090252					65	29	3	0	0	0	0.23007	1	9167	9167		19.257	3.4098	1	4475000			7194	155	3794	3794	9685	9685					0.002568313724395921
ELGLTDDQTF	10	Unmodified	_ELGLTDDQTF_					0	0	0			REV__ENST00000484651.5_1_4:1725148-1739714:+|nuORF	REV__ENST00000484651.5_1_4:1725148-1739714:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.3128662109375	2	569.766768	1137.51898	0.59621	0.0003397	-1.0112	-0.00057617	-0.41503	-0.00023647	570.2660996895482	77.669	0.27505	77.669	77.496	77.771	0					11	9	2	0	0	0	0.31629	1	20056	20056		10.074	0	1	72405	+		7195	13448	3795	3795	9686	9686					-0.04427482589721876
ELGSELPESI	10	Unmodified	_ELGSELPESI_					0	0	0		ENST00000467108.1_1_18:74700562-74728973:-|nuORF	ENST00000467108.1_1_18:74700562-74728973:-|nuORF	ENST00000467108.1_1_18:74700562-74728973:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7107543945312	2	537.271687	1072.52882	0.3214	0.00017268	-4.4609	-0.0023967	-4.1395	-0.002224	537.2686046489598	67.102	0.36919	67.18	67.012	67.382	0.078041					18	12	2	0	0	0	0.29038	1	16789	16789		18.146	0	1	72735			7196	10819	3796	3796	9687	9687					-0.00454294584346826
ELGSELPESI	10	Unmodified	_ELGSELPESI_					0	0	0		ENST00000467108.1_1_18:74700562-74728973:-|nuORF	ENST00000467108.1_1_18:74700562-74728973:-|nuORF	ENST00000467108.1_1_18:74700562-74728973:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.710693359375	2	537.271687	1072.52882	0.34291	0.00018423	-4.1811	-0.0022464	-3.8382	-0.0020622	537.2689818362642	67.363	0.30255	67.347	67.148	67.451	-0.016296					14	9	2	0	0	0	0.26638	1	16839	16839		24.021	0	1	118420			7197	10819	3796	3796	9688	9688					-0.00454294584346826
ELGSLVWEL	9	Unmodified	_ELGSLVWEL_					0	0	0		nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.300048828125	2	523.281857	1044.54916	0.58751	0.00030743	-0.0049301	-2.5799E-06	0.58258	0.00030485	523.2818133576103	74.239	0.43849	74.239	74.098	74.537	0					20	14	2	0	0	0	0.14076	1	19045	19045		32.305	10.559	1	265090			7198	7756	3797	3797	9689	9689					0.028669208661540324
ELGSLVWEL	9	Unmodified	_ELGSLVWEL_					0	0	0		nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2998046875	2	523.281857	1044.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.422	1	74.392	73.892	74.892	-0.030655								0	0	0	0.20639	1	19056	19056		20.454	1.0146	1				7199	7756	3797	3797	9690	9690					0.028669208661540324
ELGSSVPPPAF	11	Unmodified	_ELGSSVPPPAF_					0	0	0			REV__ENSG00000130307|ENST00000252597|USHBP1	REV__ENSG00000130307|ENST00000252597|USHBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.322509765625	2	550.784764	1099.55498	0.56404	0.00031066	-2.3197	-0.0012776	-1.7556	-0.00096697	550.7839308550266	26.767	0.25443	26.756	26.625	26.879	-0.01156					11	8	2	0	0	0	0.32843	1	4425	4425		6.2058	0	1	48892	+		7200	15450	3798	3798	9691	9691					0.009180193778092871
ELGVPDSAL	9	Unmodified	_ELGVPDSAL_					0	0	0		nc|ENSG00000074047|P10070-2|GLI2;nc|ENSG00000074047|P10070-1|GLI2;ENSG00000074047|ENST00000361492|GLI2;nc|ENSG00000074047|P10070|GLI2	nc|ENSG00000074047|P10070-2|GLI2	nc|ENSG00000074047|P10070-2|GLI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.25347900390625	2	450.737283	899.460012	0.10925	4.9245E-05	-0.1564	-7.0493E-05	-0.047141	-2.1248E-05	450.73712587293176	59.457	0.63644	59.552	59.105	59.741	0.095093					34	22	2	0	0	0	0.19839	1	14371	14371		28.487	1.6032	1	155690			7201	1011	3799	3799	9692	9692					0.006260859066173907
ELGVPDSAL	9	Unmodified	_ELGVPDSAL_					0	0	0		nc|ENSG00000074047|P10070-2|GLI2;nc|ENSG00000074047|P10070-1|GLI2;ENSG00000074047|ENST00000361492|GLI2;nc|ENSG00000074047|P10070|GLI2	nc|ENSG00000074047|P10070-2|GLI2	nc|ENSG00000074047|P10070-2|GLI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2531433105469	2	450.737283	899.460012	0.36217	0.00016324	-0.43395	-0.0001956	-0.071783	-3.2355E-05	450.7371001806656	59.552	0.62323	59.54	59.116	59.739	-0.011486					31	21	2	0	0	0	0.19839	1	14407	14407		28.487	1.6032	1	197270			7202	1011	3799	3799	9693	9693					0.006260859066173907
ELGWEKEV	8	Unmodified	_ELGWEKEV_					0	0	0			REV__ENSG00000147234|ENST00000683843|FRMPD3	REV__ENSG00000147234|ENST00000683843|FRMPD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.26611328125	2	495.250557	988.486562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.934	1	35.011	34.511	35.511	0.077377								0	0	0	0.35466	1	6935	6935		12.532	0.89125	1		+		7203	16381	3800	3800	9694	9694					-0.008142252020320484
ELHAAARRLI	10	Unmodified	_ELHAAARRLI_					0	0	0			REV__ENSG00000198934|ENST00000361470|MAGEE1	REV__ENSG00000198934|ENST00000361470|MAGEE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8431396484375	2	575.346189	1148.67783	0.415	0.00023877	-2.6241	-0.0015098	-2.2091	-0.001271	575.3454592594685	88.398	2.6001	88.487	87.352	89.952	0.089195					247	141	4	0	0	0	0.39935	1	23036	23036		3.5965	1.5367	1	1377600	+		7204	18895	3801	3801	9695	9695					0.10943320619730912
ELHPLVSTL	9	Unmodified	_ELHPLVSTL_					0	0	0			REV__ENSG00000133131|ENST00000355610|MORC4	REV__ENSG00000133131|ENST00000355610|MORC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2772521972656	2	504.78985	1007.56515	0.4095	0.00020671	0.2252	0.00011368	0.6347	0.00032039	504.7901184427863	52.986	1.3637	52.986	52.55	53.914	0					84	50	2	0	0	0	0.24467	1	12379	12379		17.113	3.498	1	2167500	+		7205	15611	3802	3802	9696	9696					0.06166627103061728
ELHRTLSK	8	Unmodified	_ELHRTLSK_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;ENST00000478998.5_1_3:108124174-108178278:-|nuORF	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2851867675781	2	492.285266	982.555979	0.24976	0.00012296	0.81435	0.00040089	1.0641	0.00052385	492.28551876181297	33.259	0.44485	33.259	33.039	33.484	0					28	15	2	0	0	0	0.34388	1	6476	6476		3.5965	0	1	201200			7206	4615	3803	3803	9697	9697					0.06400278537387294
ELHRTLSK	8	Unmodified	_ELHRTLSK_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;ENST00000478998.5_1_3:108124174-108178278:-|nuORF	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	492.285266	982.555979	0.32765	0.0001613	0.6453	0.00031767	0.97295	0.00047897	492.2854957151299	33.169	0.55467	33.225	32.973	33.527	0.055309	-0.0086209	-6.3182E-05	NaN	3.5965	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194600			7207	4615	3803	3803							0.06400278537387294
ELHRTLSK	8	Unmodified	_ELHRTLSK_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;ENST00000478998.5_1_3:108124174-108178278:-|nuORF	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	492.285266	982.555979	0.23652	0.00011643	0.68424	0.00033684	0.92076	0.00045328	492.2855533582511	33.162	0.47172	33.216	32.985	33.457	0.054371	-0.01747	-2.4837E-05	NaN	3.5965	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229830			7208	4615	3803	3803							0.06400278537387294
ELHSAALDAF	10	Unmodified	_ELHSAALDAF_					0	0	0			REV__ENSG00000198680|ENST00000358022|TUSC1	REV__ENSG00000198680|ENST00000358022|TUSC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.8322143554688	2	537.266739	1072.51892	0.55871	0.00030018	1.1192	0.00060133	1.6779	0.0009015	537.26808964063	64.434	0.29768	64.527	64.391	64.688	0.09288					17	10	3	0	0	0	0.30079	1	16050	16050		14.838	0	1	99429	+		7209	18843	3804	3804	9698	9698					-0.014434377990482972
ELIAAAPSRQ	10	Unmodified	_ELIAAAPSRQ_					0	0	0			REV__ENSG00000124602|ENST00000244565|UNC5CL	REV__ENSG00000124602|ENST00000244565|UNC5CL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3192749023438	2	528.29583	1054.57711	0.29823	0.00015755	-3.7765	-0.0019951	-3.4782	-0.0018375	528.7937224987022	19.27	0.5412	19.27	19.006	19.547	0					28	17	2	0	0	0	0.31794	1	2104	2104		4.897	0	1	50290	+		7210	15243	3805	3805	9699	9699					0.052002438462295686
ELIMSNTKLLK	11	Unmodified	_ELIMSNTKLLK_					0	0	0		ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	645.364501953125	2	645.378506	1288.74246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.009	1	64.102	63.602	64.602	0.09288								0	0	0	0.31807	1	15879	15879		15.248	3.6082	1				7211	8070	3806	3806	9700	9700					0.10963714590866402
ELIRDTRWDI	10	Unmodified	_ELIRDTRWDI_					0	0	0		nc|ENSG00000290724|O14609|XKRY	nc|ENSG00000290724|O14609|XKRY	nc|ENSG00000290724|O14609|XKRY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.253173828125	3	439.570093	1315.68845	-0.14688	-6.4566E-05	0.020691	9.0952E-06	-0.12619	-5.5471E-05	439.570015276459	25.293	0.5665	25.237	24.999	25.565	-0.055931					29	19	2	0	0	0	0.32122	1	4001	4001		2.086	0.17963	1	108840			7212	13011	3807	3807	9701	9701					0.04323258483486825
ELIRRLLFR	9	Unmodified	_ELIRRLLFR_					0	0	0			REV__ENSG00000185000|ENST00000528718|DGAT1	REV__ENSG00000185000|ENST00000528718|DGAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.8899230957031	3	405.927663	1214.76116	0.017157	6.9644E-06	-1.0037	-0.00040744	-0.98657	-0.00040047	405.92712361234015	43.019	0.51782	43.105	42.891	43.408	0.085197					32	18	3	0	0	0	0.25346	1	9490	9490		7.1017	4.3665	1	292880	+		7213	18347	3808	3808	9702	9702					0.16237057067587557
ELIRRLLFR	9	Unmodified	_ELIRRLLFR_					0	0	0			REV__ENSG00000185000|ENST00000528718|DGAT1	REV__ENSG00000185000|ENST00000528718|DGAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.88995361328125	3	405.927663	1214.76116	-0.20673	-8.3917E-05	-0.95867	-0.00038915	-1.1654	-0.00047307	405.9272613851147	43.028	0.46001	43.12	42.903	43.363	0.091362					27	16	2	0	0	0	0.25346	1	9472	9472		7.1017	4.6032	1	326400	+		7214	18347	3808	3808	9703	9703					0.16237057067587557
ELISKRITF	9	Unmodified	_ELISKRITF_					0	0	0			REV__ZNF181|p.S362Ffs*51|1|0.07|ENSG00000197841|chr19:34741464-34741465|-/TT|frameshift_variant	REV__ZNF181|p.S362Ffs*51|1|0.07|ENSG00000197841|chr19:34741464-34741465|-/TT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.2770385742188	2	553.832049	1105.64954	0.31807	0.00017616	-0.44227	-0.00024494	-0.1242	-6.8785E-05	553.8316521257166	53.898	0.49731	53.955	53.638	54.136	0.056259					22	18	2	0	0	0	0.25526	1	12721	12721		4.3292	0	1	161680	+		7215	23358	3809	3809	9704	9704					0.10094577919790026
ELIWWMFV	8	Unmodified	_ELIWWMFV_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.28564453125	2	562.285889	1122.55722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.33	1	117.31	116.81	117.81	-0.024147								0	0	0	0.37992	1	30373	30373		0.79363	0	1		+		7216	16681	3810	3810	9705	9705					0.0008477658191168302
ELIYGRTEE	9	Unmodified	_ELIYGRTEE_					0	0	0			REV__ENSG00000113924|ENST00000283871|HGD	REV__ENSG00000113924|ENST00000283871|HGD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.279296875	2	555.277303	1108.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.73	1	96.73	96.23	97.23	0								0	0	0	0.25631	1	25853	25853		4.3292	0.38484	1		+		7217	14823	3811	3811	9706	9706					-0.009874724901692389
ELKDEKLKLK	10	Unmodified	_ELKDEKLKLK_					0	0	0			REV__nc|ENSG00000257103|Q8ND56-3|LSM14A	REV__nc|ENSG00000257103|Q8ND56-3|LSM14A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.8682556152344	3	415.258856	1242.75474	-0.11126	-4.6203E-05	1.7002	0.00070602	1.5889	0.00065982	415.25979000649664	38.254	0.39989	38.254	38.007	38.406	0					17	13	2	0	0	0	0.32082	1	7916	7916		1.5923	0.37745	1	123480	+		7218	19258	3812	3812	9707	9707					0.14307074325552094
ELKDEKLKLK	10	Unmodified	_ELKDEKLKLK_					0	0	0			REV__nc|ENSG00000257103|Q8ND56-3|LSM14A	REV__nc|ENSG00000257103|Q8ND56-3|LSM14A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	415.258856	1242.75474	0.33551	0.00013932	1.3267	0.00055091	1.6622	0.00069023	415.25971805084873	38.169	0.38509	38.259	38.042	38.427	0.090881	0.0027443	-0.00023247	NaN	1.5923	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111250	+		7219	19258	3812	3812							0.14307074325552094
ELKELASRVAF	11	Unmodified	_ELKELASRVAF_					0	0	0		nc|ENSG00000166220|Q96M53-2|TBATA;nc|ENSG00000166220|Q96M53|TBATA;ENSG00000166220|ENST00000456372|TBATA	nc|ENSG00000166220|Q96M53-2|TBATA	nc|ENSG00000166220|Q96M53-2|TBATA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.26824951171875	3	421.574955	1261.70304	0.19655	8.2859E-05	-4.3843	-0.0018483	-4.1877	-0.0017654	421.57289381645853	37.204	0.3874	37.297	37.06	37.448	0.093014					17	13	2	0	0	0	0.33094	1	7564	7564		7.4771	0.84669	1	77412			7220	6045	3813	3813	9708	9708					0.08265330631661527
ELKELASRVAF	11	Unmodified	_ELKELASRVAF_					0	0	0		nc|ENSG00000166220|Q96M53-2|TBATA;nc|ENSG00000166220|Q96M53|TBATA;ENSG00000166220|ENST00000456372|TBATA	nc|ENSG00000166220|Q96M53-2|TBATA	nc|ENSG00000166220|Q96M53-2|TBATA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	421.574955	1261.70304	0.073827	3.1124E-05	-3.8294	-0.0016144	-3.7556	-0.0015833	421.90749609455753	37.233	0.14023	37.321	37.218	37.358	0.08741	0.011786	0.00043633	NaN	7.4771	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32929			7221	6045	3813	3813							0.08265330631661527
ELKEQHVLK	9	Unmodified	_ELKEQHVLK_					0	0	0			REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.2554321289062	2	562.327131	1122.63971	0.28627	0.00016098	-0.53749	-0.00030224	-0.25121	-0.00014126	562.3272778954719	52.371	0.68495	52.371	51.809	52.494	0					26	24	2	0	0	0	0.25123	1	12319	12319		12.241	4.0851	1	230280	+		7222	15054	3814	3814	9709	9709					0.08329389914410967
ELKEQHVLK	9	Unmodified	_ELKEQHVLK_					0	0	0			REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	562.327131	1122.63971	0.094166	5.2952E-05	-1.2669	-0.00071239	-1.1727	-0.00065943	562.3273043635751	52.356	0.35067	52.355	52.09	52.44	-0.00081253	-0.0078648	-0.00048041	NaN	12.241	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212780	+		7223	15054	3814	3814							0.08329389914410967
ELKGRRAT	8	Unmodified	_ELKGRRAT_					0	0	0		ENST00000372583.5_1_1:42050833-42094437:-|nuORF	ENST00000372583.5_1_1:42050833-42094437:-|nuORF	ENST00000372583.5_1_1:42050833-42094437:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7776184082031	2	465.777608	929.540663	0.22919	0.00010675	-0.085836	-3.9981E-05	0.14335	6.6771E-05	465.777478436093	84.557	1.1121	84.557	84.278	85.39	0					78	41	3	0	0	0	0.4396	1	22169	22169		9.3831	2.66	1	687250			7224	9846	3815	3815	9710	9710					0.07307411740168845
ELKGRRAT	8	Unmodified	_ELKGRRAT_					0	0	0		ENST00000372583.5_1_1:42050833-42094437:-|nuORF	ENST00000372583.5_1_1:42050833-42094437:-|nuORF	ENST00000372583.5_1_1:42050833-42094437:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	465.777608	929.540663	0.25843	0.00012037	-0.052587	-2.4494E-05	0.20585	9.5879E-05	465.77747783702733	84.536	0.93137	84.617	84.25	85.182	0.080879	0.036863	0.00010307	NaN	9.3831	84	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	674090			7225	9846	3815	3815							0.07307411740168845
ELKILSDTYTV	11	Unmodified	_ELKILSDTYTV_					0	0	0		nc|ENSG00000092036|Q9H6D7-2|HAUS4;nc|ENSG00000092036|Q9H6D7-3|HAUS4;nc|ENSG00000092036|Q9H6D7-4|HAUS4;ENSG00000092036|ENST00000541587|HAUS4	nc|ENSG00000092036|Q9H6D7-2|HAUS4	nc|ENSG00000092036|Q9H6D7-2|HAUS4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.351806640625	2	641.350468	1280.68638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.16	1	106.15	105.65	106.65	-0.0027847								0	0	0	0.36335	1	28084	28084		5.2969	1.7004	1				7226	1415	3816	3816	9711	9711					0.05726784955027142
ELKKERAL	8	Unmodified	_ELKKERAL_					0	0	0		nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1	nc|ENSG00000082805|Q8IUD2-5|ERC1	nc|ENSG00000082805|Q8IUD2-5|ERC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.80364990234375	2	493.803291	985.59203	0.11476	5.6671E-05	0.8013	0.00039569	0.91607	0.00045236	493.80353451231827	31.276	0.44368	31.318	31.13	31.574	0.042366					25	15	2	0	0	0	0.32435	1	5863	5863		23.148	0	1	204630			7227	1210	3817	3817	9712	9712					0.09865735714231505
ELKKFKMKLG	10	Unmodified	_ELKKFKMKLG_					0	0	0		ENSG00000169900|ENST00000302964|PYDC1	ENSG00000169900|ENST00000302964|PYDC1	ENSG00000169900|ENST00000302964|PYDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.3749389648438	2	611.373026	1220.7315	0.21724	0.00013281	2.0771	0.0012699	2.2944	0.0014027	611.3738350232471	103.05	0.45098	103.05	102.64	103.09	-0.0011139					72	57	2	0	0	0	0.38773	1	27413	27413		5.7319	2.4505	1	1511600			7228	6400	3818	3818	9713	9713					0.1299635700725048
ELKKFKMKLG	10	Unmodified	_ELKKFKMKLG_					0	0	0		ENSG00000169900|ENST00000302964|PYDC1	ENSG00000169900|ENST00000302964|PYDC1	ENSG00000169900|ENST00000302964|PYDC1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	611.373026	1220.7315	0.1065	6.511E-05	1.9368	0.0011841	2.0433	0.0012492	611.37388067777	102.97	0.45949	102.99	102.54	103	0.015442	-0.030955	-6.7235E-05	NaN	5.7319	92	62	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2069500			7229	6400	3818	3818							0.1299635700725048
ELKKFLKKFY	10	Unmodified	_ELKKFLKKFY_					0	0	0			REV__ENSG00000198081|ENST00000651870|ZBTB14	REV__ENSG00000198081|ENST00000651870|ZBTB14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.6082458496094	3	448.607708	1342.80129	0.24945	0.0001119	0.94629	0.00042451	1.1957	0.00053642	448.60806528886326	86.487	0.7542	86.571	86.053	86.807	0.084251					80	29	3	0	0	0	0.41585	1	22776	22776		0.56317	0.057215	1	515330	+		7230	18796	3819	3819	9714	9714					0.14360558947510071
ELKKFLKKFY	10	Unmodified	_ELKKFLKKFY_					0	0	0			REV__ENSG00000198081|ENST00000651870|ZBTB14	REV__ENSG00000198081|ENST00000651870|ZBTB14	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	448.607708	1342.80129	0.40591	0.00018209	0.96296	0.00043199	1.3689	0.00061408	448.6080519461615	86.65	1.1198	86.65	85.819	86.938	0	0.039507	7.0575E-06	NaN	0.56317	118	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	570320	+		7231	18796	3819	3819							0.14360558947510071
ELKKHGIIL	9	Unmodified	_ELKKHGIIL_					0	0	0		ENSG00000124831|ENST00000308482|LRRFIP1	ENSG00000124831|ENST00000308482|LRRFIP1	ENSG00000124831|ENST00000308482|LRRFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8367919921875	2	525.837134	1049.65972	0.20402	0.00010728	-0.57972	-0.00030484	-0.3757	-0.00019756	525.836691371626	61.479	0.87327	61.47	61.243	62.117	-0.0094566					64	31	3	0	0	0	0.019896	1	15120	15120		64.236	2.8788	1	842730			7232	3186	3820	3820	9715	9715					0.1368718564503979
ELKKKKTP	8	Unmodified	_ELKKKKTP_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80029296875	2	486.316035	970.617516	0.23328	0.00011345	0.28443	0.00013832	0.51771	0.00025177	486.3161936082415	66.764	0.83958	66.848	66.6	67.44	0.083832					36	29	2	0	0	0	0.34131	1	16754	16754		7.9102	0	1	174980			7233	5733	3821	3821	9716	9716					0.13103210236658924
ELKKLKNQHK	10	Unmodified	_ELKKLKNQHK_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3859252929688	2	633.388054	1264.76155	0.16697	0.00010575	-0.54667	-0.00034626	-0.37971	-0.0002405	633.3867986458664	104.43	0.53914	104.43	104.26	104.8	0.0018463					126	77	2	0	0	0	0.40344	1	27743	27743		5.2969	0.76802	1	185000	+		7234	17637	3822	3822	9717	9717					0.13976431996798055
ELKKLKNQHK	10	Unmodified	_ELKKLKNQHK_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	633.388054	1264.76155	0.16697	0.00010575	-0.54667	-0.00034626	-0.37971	-0.0002405	633.3867986458664	104.43	0.53914	104.43	104.26	104.8	0.0018463	-0.09743	-5.6724E-05	NaN	5.2969	126	77	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185000	+		7235	17637	3822	3822							0.13976431996798055
ELKKLKNQHK	10	Unmodified	_ELKKLKNQHK_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	633.388054	1264.76155	0.41786	0.00026467	-0.82093	-0.00051997	-0.40306	-0.0002553	633.3867610996444	104.58	0.5073	104.58	104.43	104.94	0.0011444	0.046973	-0.00040414	NaN	5.2969	90	73	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170010	+		7236	17637	3822	3822							0.13976431996798055
ELKKSGGRV	9	Unmodified	_ELKKSGGRV_					0	0	0			REV__ENST00000368761.9_1_6:111913285-111927002:-|nuORF	REV__ENST00000368761.9_1_6:111913285-111927002:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.2928771972656	2	487.293091	972.571629	0.30745	0.00014982	-1.0324	-0.00050308	-0.72494	-0.00035326	487.2924752989867	80.939	0.89571	80.912	80.475	81.371	-0.026825					81	36	3	0	0	0	0.32638	1	21016	21016		4.897	4.897	1	604700	+		7237	20347	3823	3823	9718	9718					0.08424565054440336
ELKLKFNLF	9	Unmodified	_ELKLKFNLF_					0	0	0		ENST00000565884.5_1_16:20817227-20817407:-|nuORF	ENST00000565884.5_1_16:20817227-20817407:-|nuORF	ENST00000565884.5_1_16:20817227-20817407:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8433837890625	2	576.344792	1150.67503	0.41323	0.00023816	0.38003	0.00021903	0.79326	0.00045719	576.3452250710592	86.321	0.76298	86.321	86.175	86.938	0					44	30	2	0	0	0	0.25202	1	22710	22710		10.824	0.75	1	104160			7238	11972	3824	3824	9719	9719					0.10572052442216773
ELKLQNVLKH	10	Unmodified	_ELKLQNVLKH_					0	0	0		ENST00000442423.1_1:143721055-143721151:-|nuORF	ENST00000442423.1_1:143721055-143721151:-|nuORF	ENST00000442423.1_1:143721055-143721151:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.3562622070312	2	611.36933	1220.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.571	1	83.554	83.054	84.054	-0.016823								0	0	0	0.37157	1	21855	21855		5.7319	2.7366	1				7239	10563	3825	3825	9720	9720					0.12257340731162003
ELKLREGR	8	Unmodified	_ELKLREGR_					0	0	0		HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|125|2|anti-sense	HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|125|2|anti-sense	HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|125|2|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.79803466796875	2	500.79854	999.582528	0.54847	0.00027468	-0.74734	-0.00037427	-0.19887	-9.9593E-05	500.7978942113068	84.187	1.4366	84.17	83.698	85.135	-0.01683					141	61	4	0	0	0	0.4354	1	22055	22055		10.824	0	1	3310400			7240	12402	3826	3826	9721	9721					0.08271967428709104
ELKMKTRP	8	Unmodified	_ELKMKTRP_					0	0	0			REV__ENST00000381077.9_1_X:6968071-6968173:-|nuORF	REV__ENST00000381077.9_1_X:6968071-6968173:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2908630371094	2	501.791869	1001.56919	0.54763	0.0002748	0.32169	0.00016142	0.86932	0.00043622	501.7922028449027	78.734	0.58858	78.792	78.528	79.117	0.058151					42	23	2	0	0	0	0.32435	1	20380	20380		11.64	4.3511	1	322500	+		7241	20560	3827	3827	9722	9722					0.06846393325122335
ELKNLCIFSVK	11	Unmodified	_ELKNLCIFSVK_					0	0	0		ENST00000453977.2_1_X:24700103-24700596:+|nuORF	ENST00000453977.2_1_X:24700103-24700596:+|nuORF	ENST00000453977.2_1_X:24700103-24700596:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.34912109375	2	647.365398	1292.71624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.3	1	104.3	103.8	104.8	0								0	0	0	0.36517	1	27692	27692		4.897	0	1				7242	10676	3828	3828	9723	9723					0.08159445419369149
ELKQNIAK	8	Unmodified	_ELKQNIAK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;nc|ENSG00000076554|P55327-5|TPD52;ENST00000518500.1_1_8:80965431-80965644:-|nuORF;nc|ENSG00000076554|P55327-8|TPD52	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2835388183594	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.293	1	92.383	91.883	92.883	0.089195								0	0	0	0.36486	1	24536	24536		7.9102	0	1				7243	12589	3829	3829	9724	9724					0.0762576030585933
ELKQNVNKV	9	Unmodified	_ELKQNVNKV_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.3119506835938	2	536.31148	1070.60841	0.63534	0.00034074	-0.024474	-1.3126E-05	0.61086	0.00032761	536.3111455655578	88.104	1.2631	88.104	87.439	88.702	0					138	63	5	0	0	0	0.29176	2	23290	23243;23290		10.074	0	1	870810			7244	273	3830	3830	9725;9726	9726					0.07592816880332975
ELKQNVNKV	9	Unmodified	_ELKQNVNKV_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.3120727539062	2	536.31148	1070.60841	0.42309	0.00022691	0.47225	0.00025327	0.89534	0.00048018	536.3116740263903	88.065	0.79979	88.154	87.874	88.674	0.089195					97	38	3	0	0	0	0.31763	1	23282	23282		6.2058	0	1	788570			7245	273	3830	3830	9727	9727					0.07592816880332975
ELKQSREIV	9	Unmodified	_ELKQSREIV_					0	0	0		nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENSG00000023287|ENST00000025008|RB1CC1	nc|ENSG00000023287|Q8TDY2-2|RB1CC1	nc|ENSG00000023287|Q8TDY2-2|RB1CC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8532104492188	2	551.316763	1100.61897	0.47818	0.00026363	-0.21931	-0.00012091	0.25887	0.00014272	551.3167016860369	51.253	0.52428	51.3	51.037	51.561	0.046574					43	19	3	0	0	0	0.23784	1	11914	11914		13.906	13.906	1	689070			7246	521	3831	3831	9728	9728					0.07268799534745085
ELKRKEDK	8	Unmodified	_ELKRKEDK_					0	0	0			REV__nc|ENSG00000181856|P14672-2|SLC2A4	REV__nc|ENSG00000181856|P14672-2|SLC2A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3035888671875	2	523.303655	1044.59276	0.45849	0.00023993	-0.11285	-5.9054E-05	0.34564	0.00018088	523.3034012000127	81.421	1.2615	81.421	80.707	81.968	0					159	57	5	0	0	0	0.4396	1	21241	21241		9.3831	0	1	1515200	+		7247	18168	3832	3832	9729	9729					0.07224530363282611
ELKRKEDK	8	Unmodified	_ELKRKEDK_					0	0	0			REV__nc|ENSG00000181856|P14672-2|SLC2A4	REV__nc|ENSG00000181856|P14672-2|SLC2A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3036499023438	2	523.303655	1044.59276	0.15014	7.857E-05	0.16105	8.428E-05	0.3112	0.00016285	523.3035534105047	81.35	1.3643	81.419	80.55	81.915	0.068993					156	62	4	0	0	0	0.4396	1	21195	21195		9.3831	0	1	1894300	+		7248	18168	3832	3832	9730	9730					0.07224530363282611
ELKRKEDK	8	Unmodified	_ELKRKEDK_					0	0	0			REV__nc|ENSG00000181856|P14672-2|SLC2A4	REV__nc|ENSG00000181856|P14672-2|SLC2A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.303466796875	2	523.303655	1044.59276	0.46593	0.00024382	-0.18092	-9.4674E-05	0.28502	0.00014915	523.3033997985988	81.478	0.93819	81.454	81.045	81.984	-0.02404					126	40	4	0	0	0	0.44734	1	21246	21246		6.7232	0	1	1908300	+		7249	18168	3832	3832	9731	9731					0.07224530363282611
ELKRLHRAQ	9	Unmodified	_ELKRLHRAQ_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8432006835938	2	575.843813	1149.67307	0.26564	0.00015297	-0.64139	-0.00036934	-0.37575	-0.00021637	575.84293819352	94.154	2.7072	94.241	93.425	96.132	0.08667					330	228	3	0	0	0	0.33276	1	25131	25131		3.9444	0	1	501450			7250	8556	3833	3833	9732	9732					0.10422436476983421
ELKRLHRAQ	9	Unmodified	_ELKRLHRAQ_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8429565429688	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.084	1	86.168	85.668	86.668	0.084251								0	0	0	0.2489	1	22633	22633		6.7232	0.51738	1				7251	8556	3833	3833	9733	9733					0.10422436476983421
ELKRNSMHLR	10	Unmodified	_ELKRNSMHLR_					0	0	0			REV__nc|ENSG00000197283|Q96PV0-3|SYNGAP1	REV__nc|ENSG00000197283|Q96PV0-3|SYNGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3508911132812	2	642.353688	1282.69282	0.41681	0.00026774	-3.7783	-0.002427	-3.3614	-0.0021592	642.3506201992809	99.551	0.11472	99.544	99.449	99.564	-0.006897					15	12	2	0	0	0	0.40106	1	26660	26660		3.2813	0.28607	1	63145	+		7252	18724	3834	3834	9734	9734					0.0627844442544756
ELKRWRYK	8	Unmodified	_ELKRWRYK_					0	0	0			REV__nc|ENSG00000161904|Q8NC56-2|LEMD2	REV__nc|ENSG00000161904|Q8NC56-2|LEMD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8457641601562	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.83	1	111.83	111.33	112.33	0								0	0	0	0.37277	1	29077	29077		4.3292	0.73274	1		+		7253	16953	3835	3835	9735	9735					0.09028222108076989
ELKRWRYK	8	Unmodified	_ELKRWRYK_					0	0	0			REV__nc|ENSG00000161904|Q8NC56-2|LEMD2	REV__nc|ENSG00000161904|Q8NC56-2|LEMD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8461303710938	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.78	1	115.78	115.28	116.28	0								0	0	0	0.38014	1	29993	29993		0.6015	0.14316	1		+		7254	16953	3835	3835	9736	9736					0.09028222108076989
ELKRWRYK	8	Unmodified	_ELKRWRYK_					0	0	0			REV__nc|ENSG00000161904|Q8NC56-2|LEMD2	REV__nc|ENSG00000161904|Q8NC56-2|LEMD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8455200195312	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.57	1	97.563	97.063	98.063	-0.0068283								0	0	0	0.37277	1	26125	26125		4.3292	0.38484	1		+		7255	16953	3835	3835	9737	9737					0.09028222108076989
ELKRWRYK	8	Unmodified	_ELKRWRYK_					0	0	0			REV__nc|ENSG00000161904|Q8NC56-2|LEMD2	REV__nc|ENSG00000161904|Q8NC56-2|LEMD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.845458984375	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.78	1	112.79	112.29	113.29	0.014824								0	0	0	0.38014	1	29346	29346		0.6015	0.076735	1		+		7256	16953	3835	3835	9738	9738					0.09028222108076989
ELKRYSRQ	8	Unmodified	_ELKRYSRQ_					0	0	0			REV__ENSG00000274588|ENST00000611977|DGKK	REV__ENSG00000274588|ENST00000611977|DGKK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3197021484375	2	540.301447	1078.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.516	1	96.516	96.016	97.016	0								0	0	0	0.36336	1	25790	25790		8.5933	1.304	1		+		7257	19327	3836	3836	9739	9739					0.05219065940377732
ELKRYSRQ	8	Unmodified	_ELKRYSRQ_					0	0	0			REV__ENSG00000274588|ENST00000611977|DGKK	REV__ENSG00000274588|ENST00000611977|DGKK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.31982421875	2	540.301447	1078.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.175	1	97.175	96.675	97.675	0								0	0	0	0.37183	1	25980	25980		4.756	0	1		+		7258	19327	3836	3836	9740	9740					0.05219065940377732
ELKRYSRQ	8	Unmodified	_ELKRYSRQ_					0	0	0			REV__ENSG00000274588|ENST00000611977|DGKK	REV__ENSG00000274588|ENST00000611977|DGKK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.31982421875	2	540.301447	1078.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.876	1	96.946	96.446	97.446	0.070465								0	0	0	0.36623	1	25909	25909		7.2892	0.56607	1		+		7259	19327	3836	3836	9741	9741					0.05219065940377732
ELKRYSRQ	8	Unmodified	_ELKRYSRQ_					0	0	0			REV__ENSG00000274588|ENST00000611977|DGKK	REV__ENSG00000274588|ENST00000611977|DGKK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3198852539062	2	540.301447	1078.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.096	1	99.089	98.589	99.589	-0.006897								0	0	0	0.36336	1	26548	26548		8.5933	1.8701	1		+		7260	19327	3836	3836	9742	9742					0.05219065940377732
ELKSKWKRM	9	Unmodified	_ELKSKWKRM_					0	0	0			REV__ENST00000332359.5_1_X:149284203-149284287:+|nuORF	REV__ENST00000332359.5_1_X:149284203-149284287:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3471069335938	2	603.3448	1204.67505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.452	1	93.539	93.039	94.039	0.08667								0	0	0	0.25858	1	24889	24889		3.5965	0.60125	1		+		7261	20049	3837	3837	9743	9743					0.08089729170569626
ELKTELTVIR	10	Unmodified	_ELKTELTVIR_					0	0	0			REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2	REV__nc|ENSG00000080709|Q9H2S1-2|KCNN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.2804565429688	2	601.36117	1200.70779	0.67869	0.00040814	-0.055116	-3.3144E-05	0.62358	0.000375	601.3609930730535	58.243	0.60276	58.226	57.977	58.58	-0.017197					54	21	4	0	0	0	0.31538	1	14187	14187		12.873	0.69786	1	1338000	+		7262	13893	3838	3838	9744	9744					0.11546214774398322
ELKTHLPSF	9	Unmodified	_ELKTHLPSF_					0	0	0		ENST00000367498.7_1_1:185280308-185280401:-|nuORF	ENST00000367498.7_1_1:185280308-185280401:-|nuORF	ENST00000367498.7_1_1:185280308-185280401:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7393798828125	2	536.295299	1070.57605	0.14164	7.5958E-05	-0.32306	-0.00017326	-0.18143	-9.7299E-05	536.2953643286593	61.558	0.43416	61.549	61.376	61.81	-0.0094566					21	15	2	0	0	0	0.22674	1	15071	15071		17.113	0	1	215780			7263	9738	3839	3839	9745	9745					0.04358029477339187
ELKVIGFLYR	10	Unmodified	_ELKVIGFLYR_					0	0	0		ENST00000298875.8_1_14:92628287-92628362:+|nuORF	ENST00000298875.8_1_14:92628287-92628362:+|nuORF	ENST00000298875.8_1_14:92628287-92628362:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3720703125	2	619.368798	1236.72304	0.37078	0.00022965	1.7351	0.0010747	2.1059	0.0013043	619.370569418945	91.757	1.4647	91.757	91.303	92.768	0.00046539					206	95	3	0	0	0	0.38773	1	24468	24468		5.7319	1.7875	1	1022300			7264	9211	3840	3840	9746	9746					0.11415126362294359
ELLARKTNT	9	Unmodified	_ELLARKTNT_					0	0	0			REV__CON__Q3KUS7	REV__CON__Q3KUS7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.6868896484375	2	523.303655	1044.59276	0.46593	0.00024382	-0.18092	-9.4674E-05	0.28502	0.00014915	523.3033997985988	81.478	0.93819	81.454	81.045	81.984	-0.02404					126	40	4	0	0	0	0.24636	1	21338	21338		11.495	2.7493	1	1908300	+	+	7265	13268	3841	3841	9747	9747					0.07224530363305348
ELLAYLAAY	9	Unmodified	_ELLAYLAAY_					0	0	0		nc|ENSG00000204084|P32019-4|INPP5B	nc|ENSG00000204084|P32019-4|INPP5B	nc|ENSG00000204084|P32019-4|INPP5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2556762695312	2	513.778951	1025.54335	0.41453	0.00021297	-0.094119	-4.8356E-05	0.32041	0.00016462	513.7787460041526	83.682	0.81853	83.666	83.136	83.955	-0.016823					93	35	4	0	0	0	0.25811	1	21768	21768		5.2307	0.47466	1	932130			7266	12906	3842	3842	9748	9748					0.03159822354473363
ELLCEATRM	9	Unmodified	_ELLCEATRM_					0	0	0		ENST00000427063.6_1_10:29710617-29711127:+|nuORF	ENST00000427063.6_1_10:29710617-29711127:+|nuORF	ENST00000427063.6_1_10:29710617-29711127:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.23291015625	2	533.257002	1064.49945	0.42887	0.0002287	-0.77107	-0.00041118	-0.3422	-0.00018248	533.2568829205644	22.007	0.094584	22.007	21.922	22.017	0					5	3	2	0	0	0	0.26168	1	3003	3003		1.8442	0	1	33859			7267	10427	3843	3843	9749	9749					-0.030218534058121804
ELLFCFLF	8	Unmodified	_ELLFCFLF_					0	0	0		ENST00000321039.4_1_19:57966988-57967147:-|nuORF	ENST00000321039.4_1_19:57966988-57967147:-|nuORF	ENST00000321039.4_1_19:57966988-57967147:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.26708984375	2	516.267164	1030.51978	0.25022	0.00012918	0.3612	0.00018648	0.61142	0.00031566	516.7691556707756	24.215	0.82394	24.143	23.646	24.47	-0.072559					45	27	2	0	0	0	0.34337	1	3682	3682		5.2307	0	1	138140			7268	9381	3844	3844	9750	9750					0.005736853162943589
ELLFHPALF	9	Unmodified	_ELLFHPALF_					0	0	0		ENSG00000115216|ENST00000379852|NRBP1;ENST00000460499.5_1_2:27659579-27664676:+|nuORF	ENSG00000115216|ENST00000379852|NRBP1	ENSG00000115216|ENST00000379852|NRBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2787475585938	2	543.80276	1085.59097	0.23168	0.00012599	-3.9462	-0.002146	-3.7145	-0.00202	543.8010952571578	73.851	0.63507	73.851	73.363	73.998	0					33	22	2	0	0	0	0.24739	1	18797	18797		8.5933	3.8373	1	190780			7269	2618	3845	3845	9751	9751					0.05159521345308349
ELLGRPWE	8	Unmodified	_ELLGRPWE_					0	0	0			REV__ENST00000519651.5_2_8:143352476-143352983:-|nuORF	REV__ENST00000519651.5_2_8:143352476-143352983:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.313720703125	2	500.266542	998.51853	0.3944	0.00019731	1.5885	0.00079468	1.9829	0.00099199	500.77131056256354	70.476	0.16771	70.451	70.353	70.521	-0.024872					6	5	2	0	0	0	0.34313	1	17843	17843		6.7232	0.96273	1	100690	+		7270	21874	3846	3846	9752	9752					0.01921187271761937
ELLIRDVL	8	Unmodified	_ELLIRDVL_					0	0	0		ENST00000393522.8_1_5:175516482-175536190:+|nuORF	ENST00000393522.8_1_5:175516482-175536190:+|nuORF	ENST00000393522.8_1_5:175516482-175536190:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80108642578125	2	485.800217	969.585882	0.40205	0.00019531	-0.18846	-9.1552E-05	0.21359	0.00010376	485.80012692657385	89.871	1.193	89.87	89.131	90.324	-0.00080872					123	88	2	0	0	0	0.34319	1	23564	23564		5.7604	0	1	219450			7271	10049	3847	3847	9753	9753					0.09987217482705546
ELLIRTAEV	9	Unmodified	_ELLIRTAEV_					0	0	0			REV__nc|ENSG00000001631|O00522-2|KRIT1	REV__nc|ENSG00000001631|O00522-2|KRIT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7515258789062	2	522.308406	1042.60226	0.57297	0.00029927	-0.3473	-0.0001814	0.22567	0.00011787	522.3080224355173	56.964	0.50194	56.964	56.744	57.246	0					28	18	2	0	0	0	0.22674	1	13702	13702		17.113	0	1	222290	+		7272	13318	3848	3848	9754	9754					0.0826629864880033
ELLKLLLGKMQ	11	Unmodified	_ELLKLLLGKMQ_					0	0	0			REV__KMT2B|p.D1819Mfs*70|1|0.11|ENSG00000272333|chr19:35731923-35731941|AGGACCCCCCACTGGACAC/-|frameshift_variant	REV__KMT2B|p.D1819Mfs*70|1|0.11|ENSG00000272333|chr19:35731923-35731941|AGGACCCCCCACTGGACAC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	643.3989868164062	2	643.399241	1284.78393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.14	1	112.14	111.64	112.64	0								0	0	0	0.37609	1	29158	29158		2.4985	1.0166	1		+		7273	19315	3849	3849	9755	9755					0.15292895350216895
ELLLDLFHKL	10	Unmodified	_ELLLDLFHKL_					0	0	0		nc|ENSG00000151812|A4IF30|SLC35F4	nc|ENSG00000151812|A4IF30|SLC35F4	nc|ENSG00000151812|A4IF30|SLC35F4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.5709533691406	3	414.24818	1239.72271	0.53317	0.00022086	-2.5396	-0.001052	-2.0064	-0.00083115	414.24739685128293	32.061	2.4696	32.104	31.823	34.293	0.042362					192	88	4	0	0	0	0.38515	1	6504	6504		5.7834	1.0675	1	2497700			7274	12759	3850	3850	9756	9756					0.11243706642426332
ELLLEMFYRLR	11	Unmodified	_ELLLEMFYRLR_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7407531738281	3	494.942762	1481.80646	0.43929	0.00021742	-0.67521	-0.00033419	-0.23592	-0.00011677	494.942586886118	26.925	0.75292	26.913	26.513	27.266	-0.01156					75	26	4	0	0	0	0.33346	1	4411	4411		0.50596	0.051438	1	331840	+		7275	14493	3851	3851	9757	9757					0.08482494747818237
ELLPNAQII	9	Unmodified	_ELLPNAQII_					0	0	0			REV__ENSG00000006788|ENST00000252172|MYH13	REV__ENSG00000006788|ENST00000252172|MYH13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7975769042969	2	505.797675	1009.5808	0.39694	0.00020077	-1.7582	-0.00088929	-1.3613	-0.00068852	505.7973501392296	72.659	2.0202	72.659	71.718	73.738	0					101	73	2	0	0	0	0.079752	1	18526	18526		41.84	0	1	501890	+		7276	13375	3852	3852	9758	9758					0.07638913620110088
ELLPYTLL	8	Unmodified	_ELLPYTLL_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.28424072265625	2	481.283869	960.553185	0.22367	0.00010765	0.29727	0.00014307	0.52093	0.00025072	481.28399040651516	82.03	0.52045	82.03	81.741	82.262	0					40	18	3	0	0	0	0.28861	2	21360	21360;21412		32.117	7.4431	1	433640	+		7277	18080	3853	3853	9759;9760	9759					0.0713301035987115
ELLPYTLL	8	Unmodified	_ELLPYTLL_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2840881347656	2	481.283869	960.553185	0.08091	3.8941E-05	0.65847	0.00031691	0.73938	0.00035585	481.28419507914856	81.935	0.58604	82.004	81.703	82.289	0.068993					50	24	3	0	0	0	0.35375	1	21325	21325		24.674	6.5389	1	339640	+		7278	18080	3853	3853	9761	9761					0.0713301035987115
ELLPYTLL	8	Unmodified	_ELLPYTLL_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2840576171875	2	481.283869	960.553185	0.3197	0.00015387	0.014702	7.0757E-06	0.3344	0.00016094	481.2839803333763	82.108	0.61233	82.084	81.637	82.249	-0.02404					55	23	4	0	0	0	0.35375	2	21357	21357;21411		24.674	0	1	259690	+		7279	18080	3853	3853	9762;9763	9762					0.0713301035987115
ELLPYTLL	8	Unmodified	_ELLPYTLL_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	481.283869	960.553185	0.3197	0.00015387	0.014702	7.0757E-06	0.3344	0.00016094	481.2839803333763	82.108	0.61233	82.084	81.637	82.249	-0.02404	0.044582	-0.00033441	NaN	32.117	55	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259690	+		7280	18080	3853	3853							0.0713301035987115
ELLRAKIEV	9	Unmodified	_ELLRAKIEV_					0	0	0		nc|ENSG00000265817|O95073-2|FSBP;ENSG00000265817|ENST00000481490|FSBP	nc|ENSG00000265817|O95073-2|FSBP	nc|ENSG00000265817|O95073-2|FSBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8057250976562	2	535.832049	1069.64954	0.48364	0.00025915	-0.088	-4.7153E-05	0.39564	0.000212	535.8319733140647	72.521	0.54333	72.575	72.3	72.843	0.053833					25	19	2	0	0	0	0.24636	1	18524	18524		11.495	0	1	153860			7281	8672	3854	3854	9764	9764					0.11750577919792704
ELLRQKTHNL	10	Unmodified	_ELLRQKTHNL_					0	0	0			REV__nc|ENSG00000149451|Q9BZ11-2|ADAM33	REV__nc|ENSG00000149451|Q9BZ11-2|ADAM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.9102783203125	3	417.910449	1250.70952	-0.16612	-6.9424E-05	-0.021693	-9.0658E-06	-0.18781	-7.8489E-05	417.91034919266383	40.951	0.91006	40.951	40.445	41.355	0					58	33	3	0	0	0	0.38062	1	8775	8775		7.0371	1.1689	1	619460	+		7282	16462	3855	3855	9765	9765					0.09419268583064877
ELLYFEKM	8	Unmodified	_ELLYFEKM_					0	0	0		ENST00000358402.8_1_14:65542723-65542870:-|nuORF	ENST00000358402.8_1_14:65542723-65542870:-|nuORF	ENST00000358402.8_1_14:65542723-65542870:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.3258666992188	2	536.772811	1071.53107	0.67948	0.00036472	-4.0892	-0.002195	-3.4098	-0.0018303	536.7715489057676	85.721	0.68879	85.712	85.273	85.962	-0.0090027					31	21	2	0	0	0	0.34092	1	22489	22489		13.508	1.8676	1	150460			7283	9650	3856	3856	9766	9766					-0.0018353738021232857
ELMEKLEVTK	10	Unmodified	_ELMEKLEVTK_					0	0	0		nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;AKAP9|p.D1226Efs*39|1|0.05|ENSG00000127914|chr7:92016192-92016193|-/AA|frameshift_variant;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.E1981Vfs*11|1|0.07|ENSG00000127914|chr7:92062450-92062451|-/T|frameshift_variant;AKAP9|p.E1981Dfs*13|1|0.06|ENSG00000127914|chr7:92062451-92062452|-/TACTGTT|frameshift_variant;AKAP9|p.E2362Dfs*11|1|0.24|ENSG00000127914|chr7:92079218-92079218|A/-|frameshift_variant	nc|ENSG00000127914|Q99996-3|AKAP9	nc|ENSG00000127914|Q99996-3|AKAP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.58685302734375	3	407.224935	1218.65297	-0.27448	-0.00011177	-4.3979	-0.0017909	-4.6723	-0.0019027	407.5564071741184	19.328	0.16379	19.328	19.211	19.375	0					6	5	2	0	0	0	0.3183	1	2195	2195		8.4443	0.96724	1	10829			7284	3339	3857	3857	9767	9767					0.05239459911490485
ELMLELLECY	10	Unmodified	_ELMLELLECY_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46;nc|ENSG00000171811|Q8IYW2-3|CFAP46;ENST00000475340.1_1_10:134750974-134755988:-|nuORF;nc|ENSG00000171811|Q8IYW2-2|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.3017578125	2	628.301075	1254.5876	1.0328	0.00064894	-0.16224	-0.00010193	0.87061	0.00054701	628.3010735338353	56.127	0.6362	56.127	55.787	56.423	0					57	22	3	0	0	0	0.38233	2	13465	13465;13514		6.7232	0.99131	1	1966700			7285	6578	3858	3858	9768;9769	9768					-0.02951277605825453
ELMLELLECY	10	Unmodified	_ELMLELLECY_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46;nc|ENSG00000171811|Q8IYW2-3|CFAP46;ENST00000475340.1_1_10:134750974-134755988:-|nuORF;nc|ENSG00000171811|Q8IYW2-2|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.3023071289062	2	628.301075	1254.5876	0.83181	0.00052263	-0.21018	-0.00013205	0.62164	0.00039057	628.3012089865009	56.24	0.68513	56.221	55.798	56.483	-0.019081					66	24	4	0	0	0	0.38233	1	13548	13548		6.7232	2.3939	1	1754800			7286	6578	3858	3858	9770	9770					-0.02951277605825453
ELMRPALDRL	10	Unmodified	_ELMRPALDRL_					0	0	0			REV__nc|ENSG00000180316|Q8N8W4|PNPLA1	REV__nc|ENSG00000180316|Q8N8W4|PNPLA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.90679931640625	3	405.228902	1212.66488	-0.28246	-0.00011446	-0.19028	-7.7107E-05	-0.47274	-0.00019157	405.8977620366837	15.869	0.46839	15.869	15.654	16.123	0					37	16	3	0	0	0	0.31651	1	1222	1222		11.518	0	1	49874	+		7287	18107	3859	3859	9771	9771					0.06705121445338591
ELMSQILAR	9	Unmodified	_ELMSQILAR_					0	0	0			REV__nc|ENSG00000110756|Q9UPZ3-2|HPS5	REV__nc|ENSG00000110756|Q9UPZ3-2|HPS5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.810791015625	2	530.794609	1059.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.021	1	24.989	24.489	25.489	-0.031408								0	0	0	0.23852	1	3924	3924		10.074	0	1		+		7288	14683	3860	3860	9772	9772					0.047260721169323006
ELMSRHKTYS	10	Unmodified	_ELMSRHKTYS_					0	0	0		nc|ENSG00000198728|Q86U70-3|LDB1;nc|ENSG00000198728|Q86U70-2|LDB1;ENSG00000198728|ENST00000673968|LDB1	nc|ENSG00000198728|Q86U70-3|LDB1	nc|ENSG00000198728|Q86U70-3|LDB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.3113403320312	2	626.311155	1250.60776	0.20066	0.00012568	-0.056644	-3.5477E-05	0.14401	9.0198E-05	626.3111367440839	25.889	1.0806	25.889	25.533	26.614	0					104	37	4	0	0	0	0.38745	1	4268	4268		1.3295	0	1	1842000			7289	8112	3861	3861	9773	9773					-0.00752345831006096
ELNKTREEQI	10	Unmodified	_ELNKTREEQI_					0	0	0		nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-4|ANKRD17	nc|ENSG00000132466|O75179-3|ANKRD17	nc|ENSG00000132466|O75179-3|ANKRD17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.92437744140625	3	420.557853	1258.65173	-0.18918	-7.9561E-05	0.68515	0.00028814	0.49597	0.00020858	420.55801537207844	26.051	0.53449	26.051	25.875	26.41	0					40	18	3	0	0	0	0.31581	1	4213	4213		7.0371	0	1	90294			7290	3637	3862	3862	9774	9774					0.032749618669413394
ELNQILYR	8	Unmodified	_ELNQILYR_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2643432617188	2	524.792924	1047.57129	0.62851	0.00032984	-0.45119	-0.00023678	0.17732	9.3057E-05	524.7925745651445	53.378	0.44769	53.378	53.201	53.648	0					23	16	2	0	0	0	0.3366	1	12574	12574		18.135	2.2878	1	259750			7291	5600	3863	3863	9775	9775					0.049411453345555856
ELNSDRSCS	9	Unmodified	_ELNSDRSCS_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4;nc|ENSG00000130147|Q9P0V3-2|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.7977600097656	2	505.714013	1009.41347	0.2016	0.00010195	-0.25536	-0.00012914	-0.053754	-2.7184E-05	505.7140798047857	69.441	0.56992	69.419	69.209	69.779	-0.022087					37	20	2	0	0	0	0.25202	1	17475	17475		6.7232	1.9672	1	316490			7292	3451	3864	3864	9776	9776					-0.0908572198696902
ELNTNSWLQ	9	Unmodified	_ELNTNSWLQ_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.3265380859375	2	552.769645	1103.52474	0.38266	0.00021152	-2.8773	-0.0015905	-2.4946	-0.0013789	552.7680783246752	68.781	0.18918	68.762	68.68	68.869	-0.019157					11	6	2	0	0	0	0.23749	1	17365	17365		15.248	2.7169	1	110780	+		7293	17741	3865	3865	9777	9777					-0.022883392873836783
ELPEDLPQF	9	Unmodified	_ELPEDLPQF_					0	0	0		nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2787475585938	2	544.268947	1086.52334	0.31318	0.00017045	-1.2867	-0.00070032	-0.97354	-0.00052987	544.2683082906467	73.439	0.81165	73.439	73.081	73.893	0					48	28	2	0	0	0	0.075169	1	18797	18797		53.833	4.1639	1	276800			7294	7425	3866	3866	9778	9778					-0.016459733761621465
ELPEDLPQF	9	Unmodified	_ELPEDLPQF_					0	0	0		nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.27880859375	2	544.268947	1086.52334	0.46427	0.00025269	-1.8967	-0.0010323	-1.4324	-0.00077963	544.2676176568674	73.28	0.76146	73.334	73.065	73.827	0.053833					47	27	2	0	0	0	0.037019	2	18729	18729;18781		57.722	25.605	1	175510			7295	7425	3866	3866	9779;9780	9779					-0.016459733761621465
ELPEDLPQF	9	Unmodified	_ELPEDLPQF_					0	0	0		nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.279296875	2	544.268947	1086.52334	0.59469	0.00032367	-1.4787	-0.00080479	-0.88398	-0.00048112	544.2679064659488	73.577	0.81058	73.546	73.1	73.91	-0.030655					49	29	2	0	0	0	0.057976	2	18748	18748;18792		49.933	13.889	1	210190			7296	7425	3866	3866	9781;9782	9781					-0.016459733761621465
ELPEQFFQL	9	Unmodified	_ELPEQFFQL_					0	0	0		nc|ENSG00000137269|Q9BTT6-2|LRRC1;ENSG00000137269|ENST00000370888|LRRC1	nc|ENSG00000137269|Q9BTT6-2|LRRC1	nc|ENSG00000137269|Q9BTT6-2|LRRC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.792236328125	2	575.792589	1149.57063	0.4015	0.00023118	-1.1927	-0.00068672	-0.79116	-0.00045554	575.7924969032447	86.832	2.5044	86.832	85.366	87.87	0					160	104	2	0	0	0	0.07944	3	22871	22809;22871;22984		41.956	10.687	1	310940			7297	4040	3867	3867	9783;9784;9785	9784					0.0018230589485028759
ELPEQFFQL	9	Unmodified	_ELPEQFFQL_					0	0	0		nc|ENSG00000137269|Q9BTT6-2|LRRC1;ENSG00000137269|ENST00000370888|LRRC1	nc|ENSG00000137269|Q9BTT6-2|LRRC1	nc|ENSG00000137269|Q9BTT6-2|LRRC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7925415039062	2	575.792589	1149.57063	0.40967	0.00023588	-1.0701	-0.00061614	-0.66041	-0.00038026	575.792525175573	86.639	2.3368	86.725	86.054	88.391	0.085495					147	107	2	0	0	0	0.073988	2	22767	22767;22813		43.982	23.528	1	309840			7298	4040	3867	3867	9786;9787	9786					0.0018230589485028759
ELPEQFFQL	9	Unmodified	_ELPEQFFQL_					0	0	0		nc|ENSG00000137269|Q9BTT6-2|LRRC1;ENSG00000137269|ENST00000370888|LRRC1	nc|ENSG00000137269|Q9BTT6-2|LRRC1	nc|ENSG00000137269|Q9BTT6-2|LRRC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7923583984375	2	575.792589	1149.57063	0.37037	0.00021326	-1.2197	-0.00070231	-0.84936	-0.00048906	576.2927684510015	86.826	2.7026	86.82	85.677	88.379	-0.0056229					191	120	2	0	0	0	0.058995	4	22880	22781;22832;22880;22976		49.554	13.427	1	334720			7299	4040	3867	3867	9788;9789;9790;9791	9790					0.0018230589485028759
ELPFHLPLL	9	Unmodified	_ELPFHLPLL_					0	0	0		ENST00000480958.1_1_17:41902775-41908980:-|nuORF	ENST00000480958.1_1_17:41902775-41908980:-|nuORF	ENST00000480958.1_1_17:41902775-41908980:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3303833007812	2	539.81841	1077.62227	0.63308	0.00034175	-3.0889	-0.0016675	-2.4558	-0.0013257	539.8171277077683	89.471	0.58793	89.47	89.223	89.811	-0.00081635					51	42	2	0	0	0	0.20344	1	23659	23659		23.148	10.617	1	95308			7300	11017	3868	3868	9792	9792					0.0865609437942112
ELPGALLIL	9	Unmodified	_ELPGALLIL_					0	0	0		ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.799560546875	2	469.799686	937.584819	0.29945	0.00014068	0.10354	4.8641E-05	0.40299	0.00018932	469.79957866165876	88.034	0.8469	88.031	87.736	88.583	-0.0028381					105	44	3	0	0	0	0.10075	1	23179	23179		38.151	0	1	1534000			7301	4717	3869	3869	9793	9793					0.11353003113822524
ELPGAREEKQ	10	Unmodified	_ELPGAREEKQ_					0	0	0		ENSG00000182674|ENST00000523207|KCNB2	ENSG00000182674|ENST00000523207|KCNB2	ENSG00000182674|ENST00000523207|KCNB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7811889648438	2	578.801477	1155.5884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.247	1	34.247	33.747	34.747	0								0	0	0	0.33119	1	6732	6732		22.736	3.4793	1				7302	7310	3870	3870	9794	9794					0.016830211497108394
ELPGPPVV	8	Unmodified	_ELPGPPVV_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL;ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2523498535156	2	404.234179	806.453805	-0.025626	-1.0359E-05	-2.1231	-0.00085823	-2.1487	-0.00086859	404.23348555495954	72.166	0.72495	72.139	71.819	72.544	-0.027267					45	25	2	0	0	0	0.34297	1	18439	18439		6.3541	3.4649	1	309650			7303	12579	3871	3871	9795	9795					0.04283612465758324
ELPKHYFSF	9	Unmodified	_ELPKHYFSF_					0	0	0		ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.295654296875	2	584.295299	1166.57605	0.72521	0.00042373	0.64374	0.00037613	1.3689	0.00079987	584.2953725189782	50.803	0.65352	50.803	50.544	51.198	0					35	23	2	0	0	0	0.0028542	1	11822	11822		103.42	51.151	1	877070			7304	8009	3872	3872	9796	9796					-0.0005797052267553227
ELPKHYFSF	9	Unmodified	_ELPKHYFSF_					0	0	0		ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2957153320312	2	584.295299	1166.57605	0.60034	0.00035078	1.6093	0.00094028	2.2096	0.0012911	584.2953881433069	50.775	0.61904	50.822	50.577	51.196	0.046574					45	22	3	0	0	0	0.0054984	1	11816	11816		86.332	34.702	1	663860			7305	8009	3872	3872	9797	9797					-0.0005797052267553227
ELPKHYFSF	9	Unmodified	_ELPKHYFSF_					0	0	0		ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.2960205078125	2	584.295299	1166.57605	0.6693	0.00039107	1.8999	0.0011101	2.5692	0.0015012	584.2954487618746	50.903	0.8848	50.912	50.621	51.506	0.0095634					58	33	3	0	0	0	0.016005	1	11841	11841		85.642	47.466	1	786070			7306	8009	3872	3872	9798	9798					-0.0005797052267553227
ELPPAGPSPCH	11	Unmodified	_ELPPAGPSPCH_					0	0	0			REV__nc|ENSG00000074219|Q15562-3|TEAD2	REV__nc|ENSG00000074219|Q15562-3|TEAD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2984619140625	2	552.760766	1103.50698	0.16271	8.9941E-05	-0.55072	-0.00030442	-0.38801	-0.00021448	552.7593348611384	76.156	0.11316	76.156	76.08	76.193	0					5	3	2	0	0	0	0.32996	1	19589	19589		8.1555	2.3951	1	56250	+		7307	13786	3873	3873	9799	9799					-0.04063377813895386
ELPRPQEDD	9	Unmodified	_ELPRPQEDD_					0	0	0		ENST00000470943.1_1_19:55177267-55178470:+|nuORF	ENST00000470943.1_1_19:55177267-55178470:+|nuORF	ENST00000470943.1_1_19:55177267-55178470:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2365112304688	2	549.756735	1097.49892	0.65579	0.00036053	1.4297	0.00078598	2.0855	0.0011465	549.7576165843121	55.019	0.41069	55.019	54.891	55.302	0					22	14	2	0	0	0	0.20651	1	13170	13170		14.838	9.6076	1	355170			7308	10870	3874	3874	9800	9800					-0.045932335296583915
ELPRPQEDD	9	Unmodified	_ELPRPQEDD_					0	0	0		ENST00000470943.1_1_19:55177267-55178470:+|nuORF	ENST00000470943.1_1_19:55177267-55178470:+|nuORF	ENST00000470943.1_1_19:55177267-55178470:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.236572265625	2	549.756735	1097.49892	0.752	0.00041342	1.9952	0.0010969	2.7472	0.0015103	549.7577502620996	54.963	0.37167	55.026	54.89	55.262	0.063202					20	13	2	0	0	0	0.2451	1	13142	13142		15.847	1.0089	1	427890			7309	10870	3874	3874	9801	9801					-0.045932335296583915
ELPRPVRQR	9	Unmodified	_ELPRPVRQR_					0	0	0			REV__ENST00000268070.8_1_15:100514484-100533361:-|nuORF	REV__ENST00000268070.8_1_15:100514484-100533361:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7944946289062	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.34	1	111.34	110.84	111.84	0								0	0	0	0.2575	1	28964	28964		3.9444	0.3479	1		+		7310	19661	3875	3875	9802	9802					0.10422436476983421
ELPRPVRQR	9	Unmodified	_ELPRPVRQR_					0	0	0			REV__ENST00000268070.8_1_15:100514484-100533361:-|nuORF	REV__ENST00000268070.8_1_15:100514484-100533361:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8433227539062	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.74	1	111.72	111.22	112.22	-0.015625								0	0	0	0.264	1	29066	29066		1.8442	0	1		+		7311	19661	3875	3875	9803	9803					0.10422436476983421
ELPRPVRQR	9	Unmodified	_ELPRPVRQR_					0	0	0			REV__ENST00000268070.8_1_15:100514484-100533361:-|nuORF	REV__ENST00000268070.8_1_15:100514484-100533361:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8425903320312	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.7	1	117.73	117.23	118.23	0.023476								0	0	0	0.264	1	30502	30502		1.8442	0.19162	1		+		7312	19661	3875	3875	9804	9804					0.10422436476983421
ELQDMFPEEF	10	Unmodified	_ELQDMFPEEF_					0	0	0		ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.61083984375	3	428.853278	1283.538	-0.074129	-3.1791E-05	1.1351	0.00048678	1.0609	0.00045499	428.85380027894973	46.653	0.24603	46.653	46.514	46.76	0					12	8	2	0	0	0	0.32068	1	10489	10489		3.5871	0.74377	1	141440			7313	2379	3876	3876	9805	9805					-0.09242269290302829
ELQERTFFWRS	11	Unmodified	_ELQERTFFWRS_					0	0	0			REV__ENST00000464932.1_1_2:135676424-135677557:+|nuORF	REV__ENST00000464932.1_1_2:135676424-135677557:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8187561035156	3	500.252764	1497.73646	0.44227	0.00022125	0.54609	0.00027318	0.98836	0.00049443	500.2525308827979	43.413	0.30172	43.497	43.356	43.657	0.083996					17	10	3	0	0	0	0.33236	1	9539	9539		2.4348	0	1	336460	+		7314	13919	3877	3877	9806	9806					0.007503324035496917
ELQGFHVEM	9	Oxidation (M)	_ELQGFHVEM(Oxidation (M))_		ELQGFHVEM(1)		ELQGFHVEM(42)	0	0	1			REV__ENSG00000110046|ENST00000377264|ATG2A	REV__ENSG00000110046|ENST00000377264|ATG2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.2637329101562	2	553.252774	1104.491	0.36053	0.00019946	1.1298	0.00062506	1.4903	0.00082453	553.253236350513	70.152	0.21732	70.152	70.023	70.24	0					9	7	2	0	0	0	0.079752	1	17786	17786		41.84	17.166	1	78154	+		7315	14660	3878	3878	9807	9807		993			-0.057070840507776666
ELQGFHVEM	9	Oxidation (M)	_ELQGFHVEM(Oxidation (M))_					0	0	1			REV__ENSG00000110046|ENST00000377264|ATG2A	REV__ENSG00000110046|ENST00000377264|ATG2A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.252774	1104.491	0.36053	0.00019946	1.1298	0.00062506	1.4903	0.00082453	553.253236350513	70.152	0.21732	70.152	70.023	70.24	0	-0.005225	0.00030677	NaN	41.84	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78154	+		7316	14660	3878	3878				993			-0.057070840507776666
ELQGFHVEM	9	Oxidation (M)	_ELQGFHVEM(Oxidation (M))_					0	0	1			REV__ENSG00000110046|ENST00000377264|ATG2A	REV__ENSG00000110046|ENST00000377264|ATG2A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.252774	1104.491	0.34525	0.00019101	0.35285	0.00019521	0.6981	0.00038623	553.252963481128	70.097	0.28151	70.163	70.051	70.332	0.06604	0.005225	-0.00055293	NaN	41.84	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52948	+		7317	14660	3878	3878				993			-0.057070840507776666
ELQNVKDRS	9	Unmodified	_ELQNVKDRS_					0	0	0			REV__ENSG00000198765|ENST00000369522|SYCP1	REV__ENSG00000198765|ENST00000369522|SYCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7886352539062	2	544.78837	1087.56219	0.39818	0.00021692	0.086746	4.7258E-05	0.48492	0.00026418	544.7885504257263	16.712	0.72467	16.712	16.461	17.186	0					41	24	2	0	0	0	0.33911	1	1395	1395		2.9952	0	1	152710	+		7318	18858	3879	3879	9808	9808					0.021907519782416784
ELQQFFIKIRD	11	Unmodified	_ELQQFFIKIRD_					0	0	0		ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;PBRM1|p.V1336Sfs*48|1|0.44|ENSG00000163939|chr3:52563363-52563363|C/-|frameshift_variant;PBRM1|p.L1349Wfs*35|1|0.38|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;PBRM1|p.P1339Lfs*45|1|0.24|ENSG00000163939|chr3:52563353-52563353|G/-|frameshift_variant;PBRM1|p.Q1346Rfs*38|1|0.15|ENSG00000163939|chr3:52563332-52563332|T/-|frameshift_variant;PBRM1|p.D1403Lfs*18|1|0.2|ENSG00000163939|chr3:52561847-52561848|TC/-|frameshift_variant;PBRM1|p.P1491Rfs*48|1|0.62|ENSG00000163939|chr3:52554861-52554861|G/-|frameshift_variant;PBRM1|p.V1505Lfs*34|1|0.32|ENSG00000163939|chr3:52554823-52554823|G/-|frameshift_variant;PBRM1|p.P1534Hfs*5|1|0.44|ENSG00000163939|chr3:52554732-52554732|G/-|frameshift_variant;PBRM1|p.Q1511Sfs*28|1|0.49|ENSG00000163939|chr3:52554802-52554802|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.L1564Wfs*32|1|0.68|ENSG00000163939|chr3:52550627-52550627|A/-|frameshift_variant;PBRM1|p.F1594Lfs*2|1|0.68|ENSG00000163939|chr3:52550536-52550536|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-9|PBRM1;PBRM1|p.Q1560Nfs*37|1|0.46|ENSG00000163939|chr3:52550749-52550750|-/TT|frameshift_variant;PBRM1|p.S1607Qfs*5|1|0.34|ENSG00000163939|chr3:52550499-52550499|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;PBRM1|p.F1216Yfs*3|1|0.2|ENSG00000163939|chr3:52576585-52576586|-/AT|frameshift_variant;PBRM1|p.K1293Nfs*20|1|0.2|ENSG00000163939|chr3:52563490-52563490|T/-|frameshift_variant;PBRM1|p.V1235Cfs*34|1|0.23|ENSG00000163939|chr3:52564222-52564222|C/-|frameshift_variant;PBRM1|p.E1222Kfs*5|2|0.51|ENSG00000163939|chr3:52576568-52576568|C/-|frameshift_variant;PBRM1|p.E1214Rfs*6|1|0.35|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.I1197Ffs*21|1|0.4|ENSG00000163939|chr3:52576643-52576643|T/-|frameshift_variant;PBRM1|p.I1073Lfs*86|1|0.27|ENSG00000163939|chr3:52586595-52586595|T/-|frameshift_variant;PBRM1|p.M1038Sfs*121|1|0.03|ENSG00000163939|chr3:52587363-52587363|A/-|frameshift_variant;PBRM1|p.P1135Lfs*24|1|0.12|ENSG00000163939|chr3:52579183-52579183|G/-|frameshift_variant;PBRM1|p.N1126Gfs*15|1|0.24|ENSG00000163939|chr3:52586432-52586436|AAGTT/-|frameshift_variant;PBRM1|p.A1104Gfs*3|1|0.37|ENSG00000163939|chr3:52586501-52586502|-/C|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.4|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;PBRM1|p.L993Mfs*20|1|0.61|ENSG00000163939|chr3:52587496-52587499|ACAA/-|frameshift_variant;PBRM1|p.W992Mfs*12|1|0.27|ENSG00000163939|chr3:52587502-52587503|-/T|frameshift_variant;PBRM1|p.K909Nfs*6|1|0.29|ENSG00000163939|chr3:52603573-52603573|T/-|frameshift_variant;PBRM1|p.G1161Afs*57|1|0.31|ENSG00000163939|chr3:52579107-52579107|A/-|frameshift_variant;ENST00000462207.1_1_3:52620428-52643468:-|nuORF	ENSG00000163939|ENST00000707071|PBRM1	ENSG00000163939|ENST00000707071|PBRM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2620849609375	3	479.601393	1435.78235	0.47339	0.00022704	2.4467	0.0011734	2.9201	0.0014005	479.6025013037917	21.243	0.37505	21.133	20.923	21.298	-0.11003					15	12	2	0	0	0	0.33169	1	2752	2752		6.2344	2.1177	1	51690			7319	5762	3880	3880	9809	9809					0.0818897758579169
ELQQKMNYI	9	Unmodified	_ELQQKMNYI_					0	0	0		chr15:84887105-84887745|379|12.65|0.0|13.79|+|1|TE_info:MLT1K,MLT1K_dup13458,ERVL-MaLR,LTR,donor,-,84886991,84887105|None,SLC28A1|1	chr15:84887105-84887745|379|12.65|0.0|13.79|+|1|TE_info:MLT1K,MLT1K_dup13458,ERVL-MaLR,LTR,donor,-,84886991,84887105|None,SLC28A1|1	chr15:84887105-84887745|379|12.65|0.0|13.79|+|1|TE_info:MLT1K,MLT1K_dup13458,ERVL-MaLR,LTR,donor,-,84886991,84887105|None,SLC28A1|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.2876586914062	2	583.797349	1165.58014	0.39575	0.00023104	0.337	0.00019674	0.73275	0.00042778	583.7972489641796	59.705	0.83218	59.694	59.225	60.057	-0.011486					60	28	3	0	0	0	0.21389	1	14414	14414		19.257	1.1106	1	376180			7320	140	3881	3881	9810	9810					0.0039775090874627494
ELQQYCMQN	9	Unmodified	_ELQQYCMQN_					0	0	0		ENSG00000242616|ENST00000374293|GNG10;nc|ENSG00000059769|Q9H1X3-3|DNAJC25	ENSG00000242616|ENST00000374293|GNG10	ENSG00000242616|ENST00000374293|GNG10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3211059570312	2	578.741716	1155.46888	0.45359	0.00026251	0.27686	0.00016023	0.73045	0.00042274	578.7428936133914	82.924	0.16196	82.924	82.813	82.975	0					7	5	2	0	0	0	0.25527	1	21648	21648		8.7454	1.4562	1	55343			7321	8551	3882	3882	9811	9811					-0.10263631790849104
ELQSGPHSKF	10	Unmodified	_ELQSGPHSKF_					0	0	0			REV__ENSG00000163092|ENST00000409195|XIRP2;REV__nc|ENSG00000163092|A4UGR9-4|XIRP2	REV__nc|ENSG00000163092|A4UGR9-4|XIRP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.2852172851562	2	565.285463	1128.55637	0.065145	3.6826E-05	0.42523	0.00024038	0.49038	0.0002772	565.2855967327856	29.481	0.90004	29.494	29.22	30.12	0.013474					78	30	4	0	0	0	0.38773	1	5405	5405		5.7319	0.83484	1	1182800	+		7322	17034;23056	3883	3883	9812	9812					-0.002763465334282955
ELQVKSKIL	9	Unmodified	_ELQVKSKIL_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3004150390625	2	529.334424	1056.6543	0.49136	0.00026009	-0.27863	-0.00014749	0.21273	0.0001126	529.3342097380447	52.319	0.44526	52.319	52.049	52.494	0					23	15	2	0	0	0	0.24993	1	12211	12211		13.042	0	1	388110	+		7323	13863	3884	3884	9813	9813					0.12823462062578983
ELQVWTLL	8	Unmodified	_ELQVWTLL_					0	0	0		ENSG00000109927|ENST00000392793|TECTA	ENSG00000109927|ENST00000392793|TECTA	ENSG00000109927|ENST00000392793|TECTA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3033142089844	2	501.286943	1000.55933	0.42905	0.00021508	1.0239	0.00051325	1.4529	0.00072833	501.2874915572467	72.183	0.46313	72.183	71.911	72.374	0					28	16	2	0	0	0	0.42446	1	18428	18428		14.582	0	1	188190			7324	2281	3885	3885	9814	9814					0.05907528591399114
ELRAKELT	8	Unmodified	_ELRAKELT_					0	0	0			REV__ENSG00000146352|ENST00000275162|CLVS2	REV__ENSG00000146352|ENST00000275162|CLVS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7716064453125	2	480.279649	958.544745	-0.11541	-5.5427E-05	-1.9348	-0.00092922	-2.0502	-0.00098465	480.2788521713203	13.503	0.50119	13.404	13.217	13.718	-0.099291					23	17	2	0	0	0	0.44389	1	472	472		7.9102	0	1	64697	+		7325	16344	3886	3886	9815	9815					0.06381456443239131
ELRELHRQ	8	Unmodified	_ELRELHRQ_					0	0	0		ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8008422851562	2	540.799072	1079.58359	0.45531	0.00024623	0.57594	0.00031147	1.0313	0.0005577	541.3001933443212	91.62	1.2812	91.62	91.267	92.548	0					135	93	2	0	0	0	0.45169	1	24303	24303		5.2307	0.47466	1	143490			7326	8451	3887	3887	9816	9816					0.046981817976075035
ELRHEAAWRP	10	Unmodified	_ELRHEAAWRP_					0	0	0			REV__ENSG00000106789|ENST00000375077|CORO2A	REV__ENSG00000106789|ENST00000375077|CORO2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.8318481445312	2	632.830903	1263.64725	0.63307	0.00040062	0.014221	8.9994E-06	0.64729	0.00040962	632.8309559909893	32.427	0.46177	32.427	32.171	32.633	0					37	16	3	0	0	0	0.39009	1	6193	6193		5.2969	2.0156	1	194190	+		7327	14535	3888	3888	9817	9817					0.025975422346846244
ELRHEAAWRP	10	Unmodified	_ELRHEAAWRP_					0	0	0			REV__ENSG00000106789|ENST00000375077|CORO2A	REV__ENSG00000106789|ENST00000375077|CORO2A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	632.830903	1263.64725	0.63307	0.00040062	0.014221	8.9994E-06	0.64729	0.00040962	632.8309559909893	32.427	0.46177	32.427	32.171	32.633	0	0.035784	-5.5472E-05	NaN	5.2969	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194190	+		7328	14535	3888	3888							0.025975422346846244
ELRHEAAWRP	10	Unmodified	_ELRHEAAWRP_					0	0	0			REV__ENSG00000106789|ENST00000375077|CORO2A	REV__ENSG00000106789|ENST00000375077|CORO2A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	632.830903	1263.64725	0.68695	0.00043472	-0.037648	-2.3825E-05	0.6493	0.0004109	632.8309748728336	32.32	0.51951	32.375	32.126	32.645	0.055313	-0.015818	-0.00012112	NaN	5.2969	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222710	+		7329	14535	3888	3888							0.025975422346846244
ELRHEAAWRP	10	Unmodified	_ELRHEAAWRP_					0	0	0			REV__ENSG00000106789|ENST00000375077|CORO2A	REV__ENSG00000106789|ENST00000375077|CORO2A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	632.830903	1263.64725	0.47858	0.00030286	0.28984	0.00018342	0.76842	0.00048628	632.8310533498969	32.316	0.49026	32.371	32.167	32.658	0.054371	-0.019966	0.00029336	NaN	5.2969	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177920	+		7330	14535	3888	3888							0.025975422346846244
ELRNGQVEI	9	Unmodified	_ELRNGQVEI_					0	0	0		ENSG00000123838|ENST00000367070|C4BPA	ENSG00000123838|ENST00000367070|C4BPA	ENSG00000123838|ENST00000367070|C4BPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2855834960938	2	529.285463	1056.55637	-0.51892	-0.00027466	0.64763	0.00034278	0.12871	6.8122E-05	529.2857319421653	34.428	0.66192	34.504	34.212	34.874	0.075306					52	23	3	0	0	0	0.16283	1	6801	6801		29.082	3.6823	1	719200			7331	3124	3889	3889	9818	9818					0.030356534665770596
ELRPLVVSL	9	Unmodified	_ELRPLVVSL_					0	0	0			REV__ENSG00000100425|ENST00000404760|BRD1	REV__ENSG00000100425|ENST00000404760|BRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.321533203125	2	513.321317	1024.62808	0.51541	0.00026457	-0.20526	-0.00010537	0.31015	0.00015921	513.3211508006262	55.073	1.3151	55.142	54.672	55.987	0.068287					131	48	4	0	0	0	0.058995	1	13168	13168		49.554	1.9599	1	6466200	+		7332	14195	3890	3890	9819	9819					0.11675192891107145
ELRPVPLLV	9	Unmodified	_ELRPVPLLV_					0	0	0			REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3177490234375	2	518.331685	1034.64882	0.54863	0.00028437	-0.44059	-0.00022837	0.10804	5.6E-05	518.3312231690392	77.305	0.33743	77.36	77.233	77.571	0.055412					24	11	3	0	0	0	0.19747	1	19958	19958		24.021	4.7636	1	220270	+		7333	22898	3891	3891	9820	9820					0.1328778327076634
ELRPVPLLV	9	Unmodified	_ELRPVPLLV_					0	0	0			REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	518.331685	1034.64882	0.54863	0.00028437	-0.44059	-0.00022837	0.10804	5.6E-05	518.3312231690392	77.305	0.33743	77.36	77.233	77.571	0.055412	0.025217	0.00044613	NaN	24.021	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220270	+		7334	22898	3891	3891							0.1328778327076634
ELRPVPLLV	9	Unmodified	_ELRPVPLLV_					0	0	0			REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	518.331685	1034.64882	0.68385	0.00035446	-1.2122	-0.0006283	-0.52831	-0.00027384	518.3310065298957	77.387	0.27927	77.355	77.262	77.542	-0.031334	0.020456	-0.00035373	NaN	24.021	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160230	+		7335	22898	3891	3891							0.1328778327076634
ELRQRRRRRRQ	11	Unmodified	_ELRQRRRRRRQ_					0	0	0		ENST00000055682.10_1_X:74144856-74145033:-|nuORF	ENST00000055682.10_1_X:74144856-74145033:-|nuORF	ENST00000055682.10_1_X:74144856-74145033:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2203369140625	4	403.247815	1608.96215	-0.019703	-7.945E-06	-2.7566	-0.0011116	-2.7763	-0.0011195	403.49744339856267	45.578	0.48219	45.638	45.418	45.9	0.059837					16	16	2	0	0	0	0.33352	1	10266	10266		0	0	1	118450			7336	8774	3892	3892	9821	9821					0.18203139156798898
ELRRDVELKEL	11	Unmodified	_ELRRDVELKEL_					0	0	0			REV__ENSG00000163013|ENST00000520530|FBXO41	REV__ENSG00000163013|ENST00000520530|FBXO41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2685852050781	3	467.268302	1398.78308	0.50125	0.00023422	-0.18767	-8.7693E-05	0.31358	0.00014653	467.26845249377413	41.724	0.59695	41.82	41.7	42.297	0.096622					43	22	3	0	0	0	0.38248	1	9002	9002		13.535	3.0075	1	2475100	+		7337	17031	3893	3893	9822	9822					0.09963772234868884
ELRRLKTRML	10	Unmodified	_ELRRLKTRML_					0	0	0			REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF	REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.57373046875	3	439.271213	1314.79181	0.37298	0.00016384	0.18191	7.9907E-05	0.55489	0.00024375	439.27113282387967	32.4	0.51782	32.456	32.157	32.675	0.055309					29	18	2	0	0	0	0.32095	1	6095	6095		1.4551	0.44154	1	102700	+		7338	14502	3894	3894	9823	9823					0.14700467390343874
ELRSCRVEL	9	Unmodified	_ELRSCRVEL_					0	0	0		ENST00000276533.3_1_8:41386728-41386800:+|nuORF	ENST00000276533.3_1_8:41386728-41386800:+|nuORF	ENST00000276533.3_1_8:41386728-41386800:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.79345703125	2	552.79514	1103.57573	-1.1494	-0.00063536	-1.2757	-0.00070522	-2.4251	-0.0013406	552.7944322390267	34.642	0.84483	34.717	34.444	35.288	0.075306					61	30	3	0	0	0	0.12642	1	6859	6859		34.402	2.0962	1	844560			7339	9103	3895	3895	9824	9824					0.028082864858333778
ELRTRGKTTIT	11	Unmodified	_ELRTRGKTTIT_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.3748779296875	2	638.372601	1274.73065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.974	1	96.974	96.474	97.474	0								0	0	0	0.37382	1	25924	25924		2.9952	0	1				7340	4353	3896	3896	9825	9825					0.10427233891914511
ELRTRGKTTIT	11	Unmodified	_ELRTRGKTTIT_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3756713867188	2	638.372601	1274.73065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.99	1	94.988	94.488	95.488	-0.0020142								0	0	0	0.37382	1	25361	25361		2.9952	0	1				7341	4353	3896	3896	9826	9826					0.10427233891914511
ELRTRGKTTIT	11	Unmodified	_ELRTRGKTTIT_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3748168945312	2	638.372601	1274.73065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.169	1	95.167	94.667	95.667	-0.0020142								0	0	0	0.37382	1	25416	25416		2.9952	0	1				7342	4353	3896	3896	9827	9827					0.10427233891914511
ELSEMRKQ	8	Unmodified	_ELSEMRKQ_					0	0	0		CSPP1|p.G1069Wfs*5|1|0.22|ENSG00000104218|chr8:67179923-67179924|-/T|frameshift_variant;nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;ENST00000521168.5_1_8:68070723-68107652:+|nuORF;nc|ENSG00000104218|Q1MSJ5-2|CSPP1	CSPP1|p.G1069Wfs*5|1|0.22|ENSG00000104218|chr8:67179923-67179924|-/T|frameshift_variant	CSPP1|p.G1069Wfs*5|1|0.22|ENSG00000104218|chr8:67179923-67179924|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8081359863281	2	510.760766	1019.50698	0.62624	0.00031986	-0.10533	-5.38E-05	0.52091	0.00026606	510.760327553353	32.447	0.16499	32.447	32.391	32.556	0					7	5	2	0	0	0	0.33245	1	6173	6173		19.439	0	1	62002			7343	244	3897	3897	9828	9828					-0.001993778138739799
ELSLCQAPL	9	Unmodified	_ELSLCQAPL_					0	0	0			REV__L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|60|2|sense	REV__L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|60|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7403869628906	2	487.254785	972.495018	0.47899	0.00023339	2.541	0.0012381	3.02	0.0014715	487.256024737636	21.292	0.34717	21.182	21.007	21.355	-0.11003					19	11	3	0	0	0	0.26031	1	2846	2846		3.5965	0	1	39573	+		7344	22823	3898	3898	9829	9829					0.007670054429354423
ELSLKYHF	8	Unmodified	_ELSLKYHF_					0	0	0		CON__Q0V8M9	CON__Q0V8M9	CON__Q0V8M9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3080444335938	2	518.776742	1035.53893	0.54305	0.00028172	-0.1537	-7.9735E-05	0.38935	0.00020199	518.7768596578879	53.482	0.68779	53.482	53.259	53.946	0					38	25	2	0	0	0	0.32435	1	12743	12743		23.148	5.0021	1	478970		+	7345	223	3899	3899	9830	9830					0.022583579315551106
ELSLKYHF	8	Unmodified	_ELSLKYHF_					0	0	0		CON__Q0V8M9	CON__Q0V8M9	CON__Q0V8M9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3079833984375	2	518.776742	1035.53893	0.40972	0.00021255	0.14458	7.5004E-05	0.5543	0.00028756	518.7770151401998	53.611	0.85625	53.602	53.401	54.258	-0.0096054					48	31	3	0	0	0	0.30503	1	12776	12776		23.148	23.148	1	559420		+	7346	223	3899	3899	9831	9831					0.022583579315551106
ELSLLGKKK	9	Unmodified	_ELSLLGKKK_					0	0	0		ENST00000511075.5_1_4:39457912-39460059:-|nuORF;ENSG00000163682|ENST00000295955|RPL9;ENST00000514842.5_1_4:39459094-39460113:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7631530761719	2	508.329142	1014.64373	0.4513	0.00022941	-0.20218	-0.00010277	0.24912	0.00012663	508.3289721742353	20.81	0.34948	20.81	20.65	21	0					18	11	2	0	0	0	0.25779	1	2642	2642		6.2058	0.47393	1	41128			7347	11380	3900	3900	9832	9832					0.13699479408148818
ELSLRHVVE	9	Unmodified	_ELSLRHVVE_					0	0	0		CON__O76009;CON__Q15323	CON__O76009	CON__O76009	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.8194580078125	2	541.303655	1080.59276	0.67148	0.00036347	0.50856	0.00027529	1.18	0.00063876	541.3037049677309	40.514	0.96401	40.514	40.161	41.125	0					79	34	3	0	0	0	0.12642	1	8598	8598		34.402	4.5611	1	1637000		+	7348	205	3901	3901	9833	9833					0.055685303633026706
ELSLRHVVE	9	Unmodified	_ELSLRHVVE_					0	0	0		CON__O76009;CON__Q15323	CON__O76009	CON__O76009	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.8194580078125	2	541.303655	1080.59276	0.69072	0.00037389	0.26687	0.00014446	0.95759	0.00051835	541.3037119181238	40.213	0.87409	40.313	40.038	40.912	0.099407					79	31	5	0	0	0	0.16283	1	8556	8556		29.082	0.58707	1	1576700		+	7349	205	3901	3901	9834	9834					0.055685303633026706
ELSRLDQPF	9	Unmodified	_ELSRLDQPF_					0	0	0		nc|ENSG00000186185|Q86Y91-6|KIF18B;ENSG00000186185|ENST00000593135|KIF18B	nc|ENSG00000186185|Q86Y91-6|KIF18B	nc|ENSG00000186185|Q86Y91-6|KIF18B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7999267578125	2	552.787838	1103.56112	0.67971	0.00037573	2.9819	0.0016484	3.6617	0.0020241	552.7894322945738	54.696	0.70208	54.696	54.162	54.864	0					40	25	2	0	0	0	0.18943	1	12877	12877		30.225	3.3412	1	234090			7350	7599	3902	3902	9835	9835					0.013485376093285595
ELSSTVKIPD	10	Unmodified	_ELSSTVKIPD_					0	0	0		nc|ENSG00000005436|P16383-2|GCFC2;ENSG00000005436|ENST00000321027|GCFC2;nc|ENSG00000005436|P16383-3|GCFC2;nc|ENSG00000005436|P16383-4|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3272094726562	2	544.795329	1087.5761	0.093592	5.0989E-05	-3.8794	-0.0021135	-3.7858	-0.0020625	544.7934415550336	34.265	0.58366	34.331	34.012	34.595	0.06636					25	20	2	0	0	0	0.27979	1	6731	6731		27.629	1.3607	1	129370			7351	334	3903	3903	9836	9836					0.03581984686684336
ELSTSPITV	9	Unmodified	_ELSTSPITV_					0	0	0		nc|ENSG00000180228|O75569-3|PRKRA;nc|ENSG00000180228|O75569-2|PRKRA;ENSG00000180228|ENST00000325748|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2464294433594	2	473.758215	945.501877	0.078443	3.7163E-05	1.2116	0.00057402	1.2901	0.00061118	473.75853525429903	24.942	0.75291	24.942	24.575	25.328	0					47	25	3	0	0	0	0.25314	1	3871	3871		15.847	1.0089	1	231240			7352	7171	3904	3904	9837	9837					0.02694641595144276
ELSTSPITV	9	Unmodified	_ELSTSPITV_					0	0	0		nc|ENSG00000180228|O75569-3|PRKRA;nc|ENSG00000180228|O75569-2|PRKRA;ENSG00000180228|ENST00000325748|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.75860595703125	2	473.758215	945.501877	-0.14632	-6.9319E-05	1.8641	0.00088315	1.7178	0.00081383	473.75883930788046	25.017	0.52755	24.986	24.709	25.237	-0.031408					37	17	3	0	0	0	0.12846	2	3914	3903;3914		34.102	1.797	1	213660			7353	7171	3904	3904	9838;9839	9839					0.02694641595144276
ELSVVEPQPVF	11	Unmodified	_ELSVVEPQPVF_					0	0	0		nc|ENSG00000084093|Q13127-2|REST;nc|ENSG00000084093|Q13127-3|REST;nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	nc|ENSG00000084093|Q13127-2|REST	nc|ENSG00000084093|Q13127-2|REST	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.9031066894531	3	415.223811	1242.6496	-0.11392	-4.7303E-05	2.0928	0.00086896	1.9788	0.00082166	415.55901815624065	38.188	0.45452	38.188	38.064	38.518	0					18	15	2	0	0	0	0.329	1	8022	8022		2.6312	0.13275	1	102710			7354	1240	3905	3905	9840	9840					0.0379853312913383
ELSWYNIF	8	Unmodified	_ELSWYNIF_					0	0	0		nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7835693359375	2	536.260925	1070.5073	0.62205	0.00033358	-0.8971	-0.00048108	-0.27504	-0.00014749	536.2606786272341	77.295	0.53246	77.35	77.284	77.816	0.055412					24	18	2	0	0	0	0.34185	1	19942	19942		10.183	0	1	135590			7355	3313	3906	3906	9841	9841					-0.025136348223895766
ELSYRVVF	8	Unmodified	_ELSYRVVF_					0	0	0			REV__ENSG00000072071|ENST00000361434|ADGRL1	REV__ENSG00000072071|ENST00000361434|ADGRL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2873840332031	2	506.776742	1011.53893	0.13934	7.0617E-05	-0.39211	-0.00019871	-0.25276	-0.00012809	506.77672743219216	65.267	0.72623	65.267	64.96	65.686	0					29	25	2	0	0	0	0.32435	1	16206	16206		23.148	1.4018	1	205370	+		7356	13752	3907	3907	9842	9842					0.033623579315758434
ELTIPFAEP	9	Unmodified	_ELTIPFAEP_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.80853271484375	2	508.768583	1015.52261	0.51675	0.0002629	-0.79293	-0.00040342	-0.27618	-0.00014051	508.76652674268774	29.503	0.55669	29.503	29.218	29.774	0					22	19	2	0	0	0	0.24913	1	5249	5249		12.532	0.89125	1	57433	+		7357	17872	3908	3908	9843	9843					0.015472319748141672
ELTLEEAEEE	10	Unmodified	_ELTLEEAEEE_					0	0	0		nc|ENSG00000285188|Q08493|PDE4C;nc|ENSG00000285188|Q08493-2|PDE4C;ENSG00000105650|ENST00000262805|PDE4C	nc|ENSG00000285188|Q08493|PDE4C	nc|ENSG00000285188|Q08493|PDE4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.285888671875	2	596.266798	1190.51904	0.51774	0.00030871	-0.98588	-0.00058785	-0.46813	-0.00027913	596.2661368442133	57.459	0.48746	57.544	57.404	57.891	0.085621					38	17	3	0	0	0	0.34795	1	13853	13853		13.042	2.2185	1	551350			7358	13002	3909	3909	9844	9844					-0.0685952738033393
ELTLEEAEEE	10	Unmodified	_ELTLEEAEEE_					0	0	0		nc|ENSG00000285188|Q08493|PDE4C;nc|ENSG00000285188|Q08493-2|PDE4C;ENSG00000105650|ENST00000262805|PDE4C	nc|ENSG00000285188|Q08493|PDE4C	nc|ENSG00000285188|Q08493|PDE4C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	596.266798	1190.51904	0.47007	0.00028028	-0.96241	-0.00057385	-0.49234	-0.00029357	596.2661433540638	57.652	0.49342	57.652	57.525	58.018	0	0.0034172	-0.00010543	NaN	13.042	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	626300			7359	13002	3909	3909							-0.0685952738033393
ELTLGGPVL	9	Unmodified	_ELTLGGPVL_					0	0	0			REV__nc|ENSG00000124664|O95238-2|SPDEF	REV__nc|ENSG00000124664|O95238-2|SPDEF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.76580810546875	2	449.765843	897.517133	0.32702	0.00014708	0.67194	0.00030221	0.99895	0.00044929	449.7656457061107	63.367	1.2964	63.358	62.994	64.29	-0.0085564					116	46	4	0	0	0	0.14205	1	15752	15752		32.117	1.8922	1	1311700	+		7360	15245	3910	3910	9845	9845					0.06427553183004875
ELTLKREY	8	Unmodified	_ELTLKREY_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2935180664062	2	526.292756	1050.57096	0.43832	0.00023069	0.20455	0.00010765	0.64287	0.00033834	526.2927346120068	17.74	0.82175	17.74	17.477	18.299	0					56	27	3	0	0	0	0.45544	1	1798	1798		3.9444	0.3479	1	284290	+		7361	17138	3911	3911	9846	9846					0.04769725614710296
ELTPFNGRGHI	11	Unmodified	_ELTPFNGRGHI_					0	0	0			REV__ENSG00000183508|ENST00000369448|TENT5C	REV__ENSG00000183508|ENST00000369448|TENT5C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2461242675781	3	414.219283	1239.63602	0.084658	3.5067E-05	0.79326	0.00032858	0.87792	0.00036365	414.21975944058823	15.122	0.35641	15.013	14.847	15.204	-0.10982					21	12	2	0	0	0	0.3322	1	886	886		4.7159	1.7207	1	75541	+		7362	18267	3912	3912	9847	9847					0.02578720140581936
ELTSCQRPF	9	Unmodified	_ELTSCQRPF_					0	0	0		ENST00000452357.6_1_12:113355571-113355628:+|nuORF	ENST00000452357.6_1_12:113355571-113355628:+|nuORF	ENST00000452357.6_1_12:113355571-113355628:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.322265625	2	540.760766	1079.50698	0.69639	0.00037658	-0.065198	-3.5256E-05	0.63119	0.00034132	540.7608455892562	54.123	0.58189	54.107	53.833	54.415	-0.015923					33	20	2	0	0	0	0.24913	1	12862	12862		7.9102	2.1497	1	408530			7363	10655	3913	3913	9848	9848					-0.029593778138860216
ELTSSEILGF	10	Unmodified	_ELTSSEILGF_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7660522460938	2	548.282054	1094.54956	0.32113	0.00017607	2.0965	0.0011495	2.4176	0.0013255	548.2832188280465	28.889	0.46511	28.895	28.585	29.05	0.0055599					23	16	2	0	0	0	0.34325	1	5067	5067		13.906	3.8321	1	95299	+		7364	13706	3914	3914	9849	9849					0.006062957953417936
ELTYILQLAC	10	Unmodified	_ELTYILQLAC_					0	0	0		ENSG00000188000|ENST00000641288|OR7D2	ENSG00000188000|ENST00000641288|OR7D2	ENSG00000188000|ENST00000641288|OR7D2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3563232421875	2	583.809925	1165.6053	0.39425	0.00023017	-3.3612	-0.0019623	-2.967	-0.0017321	583.8060453175893	79.272	0.060211	79.333	79.293	79.353	0.061417					4	2	2	0	0	0	0.31745	1	20531	20531		8.7454	5.1489	1	29920			7365	7723	3915	3915	9850	9850					0.0291180571134646
ELVEHIISF	9	Unmodified	_ELVEHIISF_					0	0	0		ENST00000474649.1_1_7:100184248-100189648:+|nuORF;nc|ENSG00000106336|O75426-2|FBXO24;nc|ENSG00000106336|O75426-4|FBXO24;ENSG00000106336|ENST00000241071|FBXO24;nc|ENSG00000106336|O75426-3|FBXO24	ENST00000474649.1_1_7:100184248-100189648:+|nuORF	ENST00000474649.1_1_7:100184248-100189648:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2943725585938	2	543.795132	1085.57571	-0.57828	-0.00031447	-1.4231	-0.00077388	-2.0014	-0.0010883	544.2954022670939	35.034	1.046	35.034	34.446	35.492	0					100	37	4	0	0	0	0.25314	1	6960	6960		15.847	3.6065	1	1046100			7366	2072	3916	3916	9851	9851					0.03634609757477847
ELVEHIISF	9	Unmodified	_ELVEHIISF_					0	0	0		ENST00000474649.1_1_7:100184248-100189648:+|nuORF;nc|ENSG00000106336|O75426-2|FBXO24;nc|ENSG00000106336|O75426-4|FBXO24;ENSG00000106336|ENST00000241071|FBXO24;nc|ENSG00000106336|O75426-3|FBXO24	ENST00000474649.1_1_7:100184248-100189648:+|nuORF	ENST00000474649.1_1_7:100184248-100189648:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.294189453125	2	543.795132	1085.57571	-0.51514	-0.00028013	-1.6427	-0.0008933	-2.1579	-0.0011734	544.2952526862618	35.017	1.0672	35.092	34.414	35.481	0.075306					103	38	4	0	0	0	0.25314	1	6939	6939		15.847	8.2382	1	504950			7367	2072	3916	3916	9852	9852					0.03634609757477847
ELVEHIISF	9	Unmodified	_ELVEHIISF_					0	0	0		ENST00000474649.1_1_7:100184248-100189648:+|nuORF;nc|ENSG00000106336|O75426-2|FBXO24;nc|ENSG00000106336|O75426-4|FBXO24;ENSG00000106336|ENST00000241071|FBXO24;nc|ENSG00000106336|O75426-3|FBXO24	ENST00000474649.1_1_7:100184248-100189648:+|nuORF	ENST00000474649.1_1_7:100184248-100189648:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2944946289062	2	543.795132	1085.57571	-0.32978	-0.00017933	-1.7127	-0.00093136	-2.0425	-0.0011107	544.2951935296284	34.999	1.0226	35.077	34.444	35.467	0.077377					96	36	4	0	0	0	0.28674	1	6909	6909		10.824	0.75	1	842800			7368	2072	3916	3916	9853	9853					0.03634609757477847
ELVENGAGPL	10	Unmodified	_ELVENGAGPL_					0	0	0			REV__nc|ENSG00000166444|P78524-2|DENND2B	REV__nc|ENSG00000166444|P78524-2|DENND2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2793273925781	2	499.761289	997.508025	0.27106	0.00013546	-1.2863	-0.00064285	-1.0153	-0.00050739	500.2620490006876	59.466	0.56163	59.561	59.266	59.828	0.095093					26	19	2	0	0	0	0.30872	1	14496	14496		19.362	1.2156	1	309160	+		7369	17322	3917	3917	9854	9854					0.00917159826678926
ELVEQLRESI	10	Unmodified	_ELVEQLRESI_					0	0	0		nc|ENSG00000136141|Q9Y2L9-2|LRCH1;nc|ENSG00000136141|Q9Y2L9|LRCH1;ENSG00000136141|ENST00000389797|LRCH1	nc|ENSG00000136141|Q9Y2L9-2|LRCH1	nc|ENSG00000136141|Q9Y2L9-2|LRCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.908203125	3	405.890832	1214.65067	-0.34745	-0.00014103	-0.9795	-0.00039757	-1.3269	-0.00053859	405.8903536816147	30.258	0.67505	30.285	30.083	30.758	0.027157					42	23	3	0	0	0	0.3183	1	5610	5610		8.4443	0	1	177330			7370	3944	3918	3918	9855	9855					0.051927474980629995
ELVHAVVLL	9	Unmodified	_ELVHAVVLL_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1;nc|ENSG00000149212|P58005-3|SESN3;nc|ENSG00000149212|P58005-4|SESN3;ENSG00000149212|ENST00000536441|SESN3	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7741394042969	2	496.810585	991.606617	0.63253	0.00031425	-0.61855	-0.0003073	0.013973	6.9417E-06	496.8102451920967	64.092	0.54523	64.092	63.797	64.342	0					32	19	2	0	0	0	0.2451	1	15872	15872		10.824	0	1	289260			7371	1158	3919	3919	9856	9856					0.11047807862382797
ELVHAVVLL	9	Unmodified	_ELVHAVVLL_					0	0	0		nc|ENSG00000080546|Q9Y6P5-3|SESN1;nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1;nc|ENSG00000149212|P58005-3|SESN3;nc|ENSG00000149212|P58005-4|SESN3;ENSG00000149212|ENST00000536441|SESN3	nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5-3|SESN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7740783691406	2	496.810585	991.606617	0.58413	0.0002902	-0.71583	-0.00035563	-0.1317	-6.5428E-05	496.8100501791368	64.119	0.49344	64.11	63.822	64.315	-0.0095367					28	17	2	0	0	0	0.22596	1	15865	15865		21.747	8.2388	1	252720			7372	1158	3919	3919	9857	9857					0.11047807862382797
ELVILETIM	9	Unmodified	_ELVILETIM_					0	0	0		ENST00000475094.1_1_2:135676424-135700249:+|nuORF;nc|ENSG00000082258|O60583-2|CCNT2;ENSG00000082258|ENST00000264157|CCNT2	ENST00000475094.1_1_2:135676424-135700249:+|nuORF	ENST00000475094.1_1_2:135676424-135700249:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.8052978515625	2	530.801568	1059.58858	0.12623	6.7002E-05	2.1534	0.001143	2.2796	0.00121	531.3049157731557	60.109	1.0747	60.109	59.533	60.607	0					88	38	4	0	0	0	0.1659	1	14701	14701		28.487	0	1	1870700			7373	1197	3920	3920	9858	9858					0.06117304825352221
ELVKKKKSP	9	Unmodified	_ELVKKKKSP_					0	0	0			REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3159790039062	2	528.842416	1055.67028	0.67607	0.00035753	-0.47225	-0.00024975	0.20381	0.00010779	528.8421091634341	36.72	0.44929	36.72	36.536	36.985	0					27	15	2	0	0	0	0.25706	1	7498	7498		3.5965	3.5965	1	265980	+		7374	15372	3921	3921	9859	9859					0.14467168299461264
ELVKSFREF	9	Unmodified	_ELVKSFREF_					0	0	0			REV__ENST00000595279.1_1_19:3959101-3961233:-|nuORF	REV__ENST00000595279.1_1_19:3959101-3961233:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3345947265625	2	577.813856	1153.61316	0.26272	0.00015181	0.91309	0.0005276	1.1758	0.0006794	577.8144342007747	70.254	0.43336	70.254	69.972	70.406	0					28	15	2	0	0	0	0.2322	1	17750	17750		20.454	0	1	284320	+		7375	17400	3922	3922	9860	9860					0.04249701023104535
ELVNYYIEY	9	Unmodified	_ELVNYYIEY_					0	0	0		ENST00000565493.1_1_20:34635484-34635535:-|nuORF	ENST00000565493.1_1_20:34635484-34635535:-|nuORF	ENST00000565493.1_1_20:34635484-34635535:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.289794921875	2	603.289879	1204.56521	0.50226	0.00030301	-1.3258	-0.00079984	-0.82354	-0.00049684	603.2885101844174	66.785	0.41829	66.869	66.6	67.018	0.083832					34	14	4	0	0	0	0.12642	1	16750	16750		34.402	1.616	1	309330			7376	11966	3923	3923	9861	9861					-0.02889417687583773
ELVNYYIEY	9	Unmodified	_ELVNYYIEY_					0	0	0		ENST00000565493.1_1_20:34635484-34635535:-|nuORF	ENST00000565493.1_1_20:34635484-34635535:-|nuORF	ENST00000565493.1_1_20:34635484-34635535:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	603.289879	1204.56521	0.48787	0.00029433	-1.7567	-0.0010598	-1.2689	-0.00076549	603.2885095399621	66.828	0.50582	66.828	66.6	67.106	0	-0.046723	-0.00035492	NaN	34.402	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247090			7377	11966	3923	3923							-0.02889417687583773
ELVNYYIEY	9	Unmodified	_ELVNYYIEY_					0	0	0		ENST00000565493.1_1_20:34635484-34635535:-|nuORF	ENST00000565493.1_1_20:34635484-34635535:-|nuORF	ENST00000565493.1_1_20:34635484-34635535:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	603.289879	1204.56521	0.17737	0.000107	-1.2666	-0.0007641	-1.0892	-0.0006571	603.2890598139321	66.942	0.45465	66.928	66.634	67.089	-0.013588	0.053154	0.00023651	NaN	34.402	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268670			7378	11966	3923	3923							-0.02889417687583773
ELVPLCLML	9	Unmodified	_ELVPLCLML_					0	0	0			REV__EXOC6B|p.F423Lfs*5|1|0.34|ENSG00000144036|chr2:72498522-72498522|A/-|frameshift_variant	REV__EXOC6B|p.F423Lfs*5|1|0.34|ENSG00000144036|chr2:72498522-72498522|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.7885131835938	2	515.787407	1029.56026	0.58114	0.00029975	1.7344	0.00089457	2.3155	0.0011943	515.7884379295604	47.44	0.42319	47.484	47.401	47.824	0.04332					29	15	2	0	0	0	0.10075	1	10778	10778		38.151	3.7495	1	452450	+		7379	16217	3924	3924	9862	9862					0.046662836444056666
ELVSPNAQKT	10	Unmodified	_ELVSPNAQKT_					0	0	0			REV__ENSG00000143633|ENST00000366649|C1orf131	REV__ENSG00000143633|ENST00000366649|C1orf131	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2938232421875	2	543.793121	1085.57169	-0.57829	-0.00031447	2.2757	0.0012375	1.6974	0.00092302	544.2954022670939	35.034	1.046	35.034	34.446	35.492	0					100	37	4	0	0	0	0.37454	1	6905	6905		8.1555	1.4324	1	1046100	+		7380	16191	3925	3925	9863	9863					0.032325202637593975
ELVSRLLHL	9	Unmodified	_ELVSRLLHL_					0	0	0		nc|ENSG00000169689|A8MT69-3|CENPX;nc|ENSG00000169689|A8MT69-2|CENPX;ENST00000580090.5_1_17:79977083-79980595:-|nuORF;ENSG00000169689|ENST00000392359|CENPX;ENST00000584514.5_1_17:79977083-79980595:-|nuORF;ENST00000585091.1_1_17:79977515-79980737:-|nuORF;ENST00000577379.5_1_17:79977117-79980595:-|nuORF	nc|ENSG00000169689|A8MT69-3|CENPX	nc|ENSG00000169689|A8MT69-3|CENPX	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3306274414062	2	540.332216	1078.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.011	1	94.097	93.597	94.597	0.08667								0	0	0	0.25499	1	25058	25058		4.756	0.42677	1				7381	6375	3926	3926	9864	9864					0.11369997639690155
ELVSSHAPIL	10	Unmodified	_ELVSSHAPIL_					0	0	0			REV__nc|ENSG00000198121|Q92633-2|LPAR1	REV__nc|ENSG00000198121|Q92633-2|LPAR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7535400390625	2	533.300581	1064.58661	0.76842	0.0004098	3.6302	0.001936	4.3986	0.0023458	533.3027153647536	83.632	0.53998	83.632	83.254	83.794	0					26	19	2	0	0	0	0.28434	1	21815	21815		25.399	3.6527	1	165190	+		7382	23160	3927	3927	9865	9865					0.056900121317767116
ELVVSWIL	8	Unmodified	_ELVVSWIL_					0	0	0		AGMO|p.H408Tfs*2|1|0.31|ENSG00000187546|chr7:15365556-15365556|A/-|frameshift_variant;ENSG00000187546|ENST00000342526|AGMO	AGMO|p.H408Tfs*2|1|0.31|ENSG00000187546|chr7:15365556-15365556|A/-|frameshift_variant	AGMO|p.H408Tfs*2|1|0.31|ENSG00000187546|chr7:15365556-15365556|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.8010559082031	2	479.784036	957.553519	0.47519	0.00022799	0.071145	3.4134E-05	0.54633	0.00026212	479.78374695918876	84.702	0.649	84.689	84.328	84.977	-0.01284					47	25	3	0	0	0	0.41758	1	22219	22219		16.942	4.4107	1	299320			7383	21	3928	3928	9866	9866					0.07304430079727808
ELWKWQLFRLF	11	Unmodified	_ELWKWQLFRLF_					0	0	0			REV__ENSG00000185974|ENST00000335678|GRK1	REV__ENSG00000185974|ENST00000335678|GRK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2799682617188	3	522.625761	1564.85546	0.54446	0.00028455	-1.2048	-0.00062966	-0.66034	-0.00034511	522.9595828375633	51.046	0.44567	51.093	50.929	51.375	0.046574					34	16	3	0	0	0	0.33236	1	11861	11861		4.4062	3.9516	1	432900	+		7384	18426	3929	3929	9867	9867					0.09562151099044058
ELWKWQLFRLF	11	Unmodified	_ELWKWQLFRLF_					0	0	0			REV__ENSG00000185974|ENST00000335678|GRK1	REV__ENSG00000185974|ENST00000335678|GRK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	522.625761	1564.85546	0.62424	0.00032624	-1.1915	-0.00062273	-0.56731	-0.00029649	522.6251345943141	51.103	0.45988	51.112	50.913	51.373	0.0095634	0.013711	0.00014354	NaN	4.4062	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309940	+		7385	18426	3929	3929							0.09562151099044058
ELWQTVFDL	9	Unmodified	_ELWQTVFDL_					0	0	0			REV__TCP11L1|p.H317Pfs*53|1|0.24|ENSG00000176148|chr11:33061701-33061702|-/C|frameshift_variant	REV__TCP11L1|p.H317Pfs*53|1|0.24|ENSG00000176148|chr11:33061701-33061702|-/C|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7916259765625	2	575.792589	1149.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.19	1	113.19	112.69	113.69	0								0	0	0	0.2505	1	29402	29402		6.2058	0	1		+		7386	17923	3930	3930	9868	9868					0.0018230589485028759
ELYEKEILIDI	11	Unmodified	_ELYEKEILIDI_					0	0	0			REV__ENSG00000055130|ENST00000325222|CUL1	REV__ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.276611328125	3	459.921909	1376.7439	0.12952	5.957E-05	0.83733	0.00038511	0.96686	0.00044468	459.9222229865456	52.901	0.62646	52.901	52.574	53.201	0					47	22	3	0	0	0	0.33146	1	12436	12436		4.1166	1.6818	1	677770	+		7387	13590	3931	3931	9869	9869					0.07059627160629134
ELYEKEILIDI	11	Unmodified	_ELYEKEILIDI_					0	0	0			REV__ENSG00000055130|ENST00000325222|CUL1	REV__ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2764587402344	3	459.921909	1376.7439	0.34403	0.00015823	0.6699	0.0003081	1.0139	0.00046633	459.92217218466067	52.814	0.55811	52.865	52.603	53.161	0.050575					43	19	3	0	0	0	0.3299	1	12428	12428		6.6235	2.2173	1	810740	+		7388	13590	3931	3931	9870	9870					0.07059627160629134
ELYFLLIEK	9	Unmodified	_ELYFLLIEK_					0	0	0		ENST00000484988.2_1_1:67081779-67091584:+|nuORF	ENST00000484988.2_1_1:67081779-67091584:+|nuORF	ENST00000484988.2_1_1:67081779-67091584:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3367919921875	2	584.336633	1166.65871	0.24523	0.00014329	0.43536	0.0002544	0.68059	0.00039769	584.3369044894233	17.695	0.51585	17.635	17.384	17.9	-0.060431					44	17	3	0	0	0	0.35563	1	1661	1661		0.52476	0	1	93580			7389	11083	3932	3932	9871	9871					0.08204926485495889
ELYKEVLL	8	Unmodified	_ELYKEVLL_					0	0	0		ENSG00000173258|ENST00000309235|ZNF483;nc|ENSG00000173258|Q8TF39-2|ZNF483	ENSG00000173258|ENST00000309235|ZNF483	ENSG00000173258|ENST00000309235|ZNF483	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7843017578125	2	503.794601	1005.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.766	1	81.835	81.335	82.335	0.068993								0	0	0	0.36486	1	21304	21304		7.9102	0	1				7390	6710	3933	3933	9872	9872					0.07208395388579447
ELYSRWIL	8	Unmodified	_ELYSRWIL_					0	0	0		ENSG00000197386|ENST00000355072|HTT;ENST00000513806.1_1_4:3230649-3237073:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3173828125	2	540.297842	1078.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.422	1	75.475	74.975	75.975	0.052361								0	0	0	0.35014	1	19369	19369		14.582	0	1				7391	7959	3934	3934	9873	9873					0.04498333339961391
ELYTKVMKP	9	Unmodified	_ELYTKVMKP_					0	0	0			REV__ENSG00000115919|ENST00000264170|KYNU;REV__nc|ENSG00000115919|Q16719-2|KYNU	REV__ENSG00000115919|ENST00000264170|KYNU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.8055419921875	2	554.807185	1107.59982	0.72292	0.00040108	-1.1996	-0.00066552	-0.47664	-0.00026445	554.8062823069432	37.529	0.38753	37.529	37.259	37.646	0					29	13	3	0	0	0	0.11461	1	7768	7768		36.127	1.195	1	499650	+		7392	14902;22962	3935	3935	9874	9874					0.050321269195137575
ELYTKVMKP	9	Unmodified	_ELYTKVMKP_					0	0	0			REV__ENSG00000115919|ENST00000264170|KYNU;REV__nc|ENSG00000115919|Q16719-2|KYNU	REV__ENSG00000115919|ENST00000264170|KYNU	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	554.807185	1107.59982	0.32167	0.00017847	-1.2746	-0.00070718	-0.95296	-0.00052871	554.8063861944785	37.35	0.35151	37.443	37.248	37.599	0.093018	-0.053846	-9.7435E-05	NaN	36.127	31	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422560	+		7393	14902;22962	3935	3935							0.050321269195137575
ELYTRFDH	8	Unmodified	_ELYTRFDH_					0	0	0		ENSG00000152402|ENST00000526355|GUCY1A2;nc|ENSG00000152402|P33402-3|GUCY1A2;nc|ENSG00000152402|P33402-2|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3294067382812	2	540.759081	1079.50361	0.67373	0.00036433	4.0252	0.0021766	4.6989	0.002541	541.2624847115446	87.185	0.16463	87.179	87.078	87.243	-0.0056229					5	4	2	0	0	0	0.34337	1	22963	22963		5.2307	0.47466	1	43235			7394	5018	3936	3936	9875	9875					-0.032963045962333126
ELYWQIGIE	9	Unmodified	_ELYWQIGIE_					0	0	0		ENSG00000096088|ENST00000373025|PGC	ENSG00000096088|ENST00000373025|PGC	ENSG00000096088|ENST00000373025|PGC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2941284179688	2	575.792589	1149.57063	0.18811	0.00010831	-0.62657	-0.00036078	-0.43846	-0.00025246	576.2935641669708	111.48	0.040176	111.5	111.47	111.51	0.01152					6	5	2	0	0	0	0.31763	1	29029	29029		6.2058	0.9089	1	110850			7395	1463	3937	3937	9876	9876					0.0018230589482755022
ELYYGGHLCY	10	Unmodified	_ELYYGGHLCY_					0	0	0		ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.58685302734375	3	406.514708	1216.5223	-0.15691	-6.3787E-05	0.94584	0.0003845	0.78893	0.00032071	406.51511022841305	19.399	0.25977	19.284	19.145	19.405	-0.11592					14	8	2	0	0	0	0.32123	1	2256	2256		0.69767	0	1	19905			7396	7532	3938	3938	9877	9877					-0.07730511016666242
ELYYHRNPR	9	Unmodified	_ELYYHRNPR_					0	0	0		nc|ENSG00000119514|Q8IXK2-2|GALNT12;ENSG00000119514|ENST00000375011|GALNT12	nc|ENSG00000119514|Q8IXK2-2|GALNT12	nc|ENSG00000119514|Q8IXK2-2|GALNT12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.9134521484375	3	416.547511	1246.6207	0.37022	0.00015421	3.6675	0.0015277	4.0377	0.0016819	416.54911732130233	20.884	0.67691	20.831	20.584	21.261	-0.05291					38	23	2	0	0	0	0.25988	1	2657	2657		2.2828	1.0894	1	75629			7397	2883	3939	3939	9878	9878					0.007258533433514458
EMAAFDANGV	10	Unmodified	_EMAAFDANGV_					0	0	0			REV__ENST00000567011.1_1_16:57179810-57181567:+|nuORF	REV__ENST00000567011.1_1_16:57179810-57181567:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2417602539062	2	512.723849	1023.43315	0.1044	5.3527E-05	0.47805	0.00024511	0.58244	0.00029863	512.7241004295621	22.613	0.7962	22.525	22.086	22.883	-0.087608					52	28	2	0	0	0	0.38233	1	3293	3293		6.7232	1.9672	1	128100	+		7398	16054	3940	3940	9879	9879					-0.07763345976218261
EMAGREAL	8	Unmodified	_EMAGREAL_					0	0	0		nc|ENSG00000163520|P98095|FBLN2;ENSG00000163520|ENST00000404922|FBLN2	nc|ENSG00000163520|P98095|FBLN2	nc|ENSG00000163520|P98095|FBLN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.20281982421875	2	438.715827	875.417102	-0.12069	-5.2947E-05	-0.43882	-0.00019252	-0.5595	-0.00024546	438.71576249868764	18.929	0.76174	18.812	18.47	19.232	-0.11739					39	26	2	0	0	0	0.34247	1	2056	2056		8.5933	0	1	86131			7399	5694	3941	3941	9880	9880					-0.02559007422473769
EMANGIFVSP	10	Unmodified	_EMANGIFVSP_					0	0	0			REV__ENST00000377028.9_1_13:95091686-95091875:-|nuORF	REV__ENST00000377028.9_1_13:95091686-95091875:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3110961914062	2	532.757692	1063.50083	0.63572	0.00033868	-3.3416	-0.0017803	-2.7059	-0.0014416	533.2573447179433	45.64	0.26609	45.705	45.461	45.727	0.065048					13	9	2	0	0	0	0.31039	1	10166	10166		18.146	7.0319	1	106310	+		7400	20497	3942	3942	9881	9881					-0.028378960453892432
EMCDSCYSGSL	11	Unmodified	_EMCDSCYSGSL_					0	0	0		nc|ENSG00000215846|A8MV57|MPTX1	nc|ENSG00000215846|A8MV57|MPTX1	nc|ENSG00000215846|A8MV57|MPTX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.77880859375	2	597.709224	1193.4039	0.5954	0.00035588	-0.47569	-0.00028432	0.11971	7.1553E-05	597.7089578007216	49.982	0.58201	50.002	49.67	50.252	0.020695					28	21	2	0	0	0	0.33149	1	11519	11519		5.2969	0	1	226410			7401	12948	3943	3943	9882	9882					-0.18506994379026764
EMEDTDFFF	9	Unmodified	_EMEDTDFFF_					0	0	0		ENST00000404589.7_1_3:58487368-58487425:+|nuORF	ENST00000404589.7_1_3:58487368-58487425:+|nuORF	ENST00000404589.7_1_3:58487368-58487425:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.7294311523438	2	590.728797	1179.44304	0.23986	0.00014169	0.24608	0.00014536	0.48594	0.00028706	590.7292412322282	22.776	0.58364	22.731	22.501	23.084	-0.044867					39	20	3	0	0	0	0.34536	1	3254	3254		2.0598	0.40713	1	101750			7402	10213	3944	3944	9883	9883					-0.13950202761498076
EMFDDKAG	8	Unmodified	_EMFDDKAG_					0	0	0			REV__ENST00000477460.6_1_6:134491408-134493948:-|nuORF	REV__ENST00000477460.6_1_6:134491408-134493948:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7485046386719	2	456.692018	911.369483	0.068287	3.1186E-05	-2.6523	-0.0012113	-2.584	-0.0011801	456.6907095673955	17.684	0.3716	17.624	17.472	17.844	-0.060429					17	12	2	0	0	0	0.34218	1	1673	1673		9.3474	0.75416	1	16989	+		7403	15017	3945	3945	9884	9884					-0.08974706413300737
EMLADRHLQ	9	Unmodified	_EMLADRHLQ_					0	0	0		ENSG00000142623|ENST00000375471|PADI1	ENSG00000142623|ENST00000375471|PADI1	ENSG00000142623|ENST00000375471|PADI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.8037109375	2	556.77949	1111.54443	0.24716	0.00013761	3.9476	0.0021979	4.1948	0.0023356	556.779859270954	16.629	0.84142	16.567	16.235	17.077	-0.062532					62	29	3	0	0	0	0.23767	1	1408	1408		18.146	2.2992	1	155360			7404	4456	3946	3946	9885	9885					-0.006882865482793932
EMLDWVLL	8	Unmodified	_EMLDWVLL_					0	0	0			REV__ENST00000361060.5_1_2:69590775-69601149:-|nuORF	REV__ENST00000361060.5_1_2:69590775-69601149:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.767333984375	2	509.767529	1017.5205	-0.094043	-4.794E-05	0.50243	0.00025612	0.40839	0.00020818	509.7679642977332	13.63	0.54609	13.53	13.362	13.908	-0.099291					29	19	2	0	0	0	0.34337	1	496	496		5.2307	0	1	105330	+		7405	20275	3947	3947	9886	9886					0.012444799653621885
EMLENPEMF	9	Unmodified	_EMLENPEMF_					0	0	0		nc|ENSG00000172819|P13631-3|RARG;nc|ENSG00000172819|P13631-4|RARG;nc|ENSG00000172819|P13631-2|RARG;ENSG00000172819|ENST00000425354|RARG	nc|ENSG00000172819|P13631-3|RARG	nc|ENSG00000172819|P13631-3|RARG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8055419921875	2	570.241018	1138.46748	0.50801	0.00028969	-3.1271	-0.0017832	-2.6191	-0.0014935	570.2389954354115	76.898	0.47903	76.867	76.734	77.213	-0.031334					25	17	2	0	0	0	0.23784	1	19856	19856		9.3831	0	1	88982			7406	6664	3948	3948	9887	9887					-0.09621265879604834
EMLPVVLELIK	11	Unmodified	_EMLPVVLELIK_					0	0	0			REV__ENSG00000164190|ENST00000282516|NIPBL	REV__ENSG00000164190|ENST00000282516|NIPBL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3619995117188	2	642.3858	1282.75705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.73	1	119.76	119.26	120.26	0.027756								0	0	0	0.38126	1	30956	30956		1.1933	0	1		+		7407	17136	3949	3949	9888	9888					0.1269778673899964
EMLQLNQYI	9	Unmodified	_EMLQLNQYI_					0	0	0			REV__ENST00000497292.1_1_20:46255794-46256373:+|nuORF	REV__ENST00000497292.1_1_20:46255794-46256373:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2920532226562	2	576.291899	1150.56925	0.3589	0.00020683	-1.1605	-0.0006688	-0.80163	-0.00046197	576.2912663324859	26.425	0.40372	26.403	26.266	26.67	-0.022236					19	13	2	0	0	0	0.33719	1	4352	4352		3.2813	0.54611	1	63967	+		7408	21682	3950	3950	9889	9889					-1.6514655499122455E-05
EMLQLNQYI	9	Unmodified	_EMLQLNQYI_					0	0	0			REV__ENST00000497292.1_1_20:46255794-46256373:+|nuORF	REV__ENST00000497292.1_1_20:46255794-46256373:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	576.291899	1150.56925	0.1107	6.3798E-05	-1.5987	-0.00092131	-1.488	-0.00085751	576.290927250457	26.379	0.37068	26.379	26.215	26.586	0	0.0093235	-0.00025658	NaN	3.2813	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54990	+		7409	21682	3950	3950							-1.6514655499122455E-05
EMLQLNQYI	9	Unmodified	_EMLQLNQYI_					0	0	0			REV__ENST00000497292.1_1_20:46255794-46256373:+|nuORF	REV__ENST00000497292.1_1_20:46255794-46256373:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	576.291899	1150.56925	0.22687	0.00013074	-1.3656	-0.00078701	-1.1388	-0.00065626	576.2910912638769	26.367	0.36833	26.328	26.206	26.575	-0.038671	-0.041977	1.2035E-05	NaN	3.2813	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72588	+		7410	21682	3950	3950							-1.6514655499122455E-05
EMLQLNQYI	9	Unmodified	_EMLQLNQYI_					0	0	0			REV__ENST00000497292.1_1_20:46255794-46256373:+|nuORF	REV__ENST00000497292.1_1_20:46255794-46256373:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	576.291899	1150.56925	0.3589	0.00020683	-1.1605	-0.0006688	-0.80163	-0.00046197	576.2912663324859	26.425	0.40372	26.403	26.266	26.67	-0.022236	0.032653	0.00024844	NaN	3.2813	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63967	+		7411	21682	3950	3950							-1.6514655499122455E-05
EMMHSLREMTV	11	Unmodified	_EMMHSLREMTV_					0	0	0			REV__ENSG00000198453|ENST00000333987|ZNF568	REV__ENSG00000198453|ENST00000333987|ZNF568	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2102966308594	3	455.210414	1362.60941	-0.21627	-9.845E-05	-0.084987	-3.8687E-05	-0.30126	-0.00013714	455.2103516619149	12.568	0.28364	12.568	12.468	12.751	0					17	9	2	0	0	0	0.4745	1	177	177		1.4551	0.75745	1	96554	+		7412	18825	3951	3951	9890	9890					-0.057387961289578016
EMPFLLLID	9	Unmodified	_EMPFLLLID_					0	0	0			REV__ENST00000293826.4_1_17:7464239-7464377:+|nuORF	REV__ENST00000293826.4_1_17:7464239-7464377:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8543701171875	2	545.796286	1089.57802	0.28857	0.0001575	2.1497	0.0011733	2.4383	0.0013308	545.7972713258421	12.575	0.22807	12.478	12.324	12.552	-0.096607					14	7	3	0	0	0	0.25938	1	125	125		4.3292	0.38484	1	59982	+		7413	19767	3952	3952	9891	9891					0.03681322170950807
EMPFLLLID	9	Unmodified	_EMPFLLLID_					0	0	0			REV__ENST00000293826.4_1_17:7464239-7464377:+|nuORF	REV__ENST00000293826.4_1_17:7464239-7464377:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	545.796286	1089.57802	0.10521	5.7421E-05	2.1405	0.0011683	2.2457	0.0012257	545.798034984086	12.578	0.17284	12.578	12.468	12.641	0	0.044092	-0.00038934	NaN	4.3292	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55889	+		7414	19767	3952	3952							0.03681322170950807
EMPLLQRWGL	10	Unmodified	_EMPLLQRWGL_					0	0	0			REV__nc|ENSG00000161270|O60500-2|NPHS1	REV__nc|ENSG00000161270|O60500-2|NPHS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5873718261719	3	414.893631	1241.65906	0.17935	7.441E-05	-2.4991	-0.0010369	-2.3198	-0.00096245	415.2273537653034	29.353	0.27215	29.353	29.169	29.441	0					13	9	2	0	0	0	0.3179	1	5222	5222		8.9762	1.0308	1	126810	+		7415	16937	3953	3953	9892	9892					0.04790022933684668
EMQRLIAEKN	10	Unmodified	_EMQRLIAEKN_					0	0	0			REV__nc|ENSG00000139220|O75334-6|PPFIA2	REV__nc|ENSG00000139220|O75334-6|PPFIA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.54296875	3	411.220295	1230.63906	-0.12805	-5.2659E-05	-1.4482	-0.00059555	-1.5763	-0.00064821	411.22005188491283	17.865	0.1839	17.865	17.746	17.93	0					6	5	2	0	0	0	0.32122	1	1772	1772		2.086	0.89267	1	8652.1	+		7416	15977	3954	3954	9893	9893					0.03296227203077251
EMSKREPRRK	10	Unmodified	_EMSKREPRRK_					0	0	0			REV__nc|ENSG00000174672|Q8IWQ3-6|BRSK2	REV__nc|ENSG00000174672|Q8IWQ3-6|BRSK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.8772888183594	3	439.578705	1315.71429	-0.18057	-7.9374E-05	0.13925	6.1212E-05	-0.041318	-1.8162E-05	439.57863090983096	15.275	0.3884	15.211	15.069	15.457	-0.064414					24	12	3	0	0	0	0.32162	1	1033	1033		0.77653	0.27058	1	51798	+		7417	16904	3955	3955	9894	9894					0.06905829454126433
EMSSVKRSL	9	Unmodified	_EMSSVKRSL_					0	0	0		ENST00000508889.1_1_5:102895742-102898461:-|nuORF	ENST00000508889.1_1_5:102895742-102898461:-|nuORF	ENST00000508889.1_1_5:102895742-102898461:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.3324584960938	2	518.776416	1035.53828	0.66056	0.00034268	2.6027	0.0013502	3.2632	0.0016929	518.7779098237243	36.805	0.19155	36.898	36.818	37.01	0.093014					9	6	2	0	0	0	0.25066	1	7499	7499		11.64	0	1	59158			7418	11353	3956	3956	9895	9895					0.02193195220229427
EMTRASDRYC	10	Unmodified	_EMTRASDRYC_					0	0	0			REV__ENST00000308660.5_1_5:126253889-126366245:-|nuORF	REV__ENST00000308660.5_1_5:126253889-126366245:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.8840637207031	3	411.17799	1230.51214	-0.27501	-0.00011308	0.27769	0.00011418	0.0026723	1.0988E-06	411.1781457501811	15.615	0.23332	15.615	15.557	15.791	0					11	7	2	0	0	0	0.32072	1	1074	1074		1.4551	0.44154	1	17200	+		7419	19882	3957	3957	9896	9896					-0.0938944201357117
EMWPSLKSIF	10	Unmodified	_EMWPSLKSIF_					0	0	0			REV__ENST00000414744.2_1_17:26926168-26926465:+|nuORF	REV__ENST00000414744.2_1_17:26926168-26926465:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.57855224609375	3	413.21437	1236.62128	0.048716	2.013E-05	1.8785	0.00077623	1.9272	0.00079636	413.21582765999227	55.232	0.74693	55.232	54.761	55.507	0					34	27	2	0	0	0	0.31986	1	13053	13053		2.6312	1.5215	1	180430	+		7420	20803	3958	3958	9897	9897					0.012435119481779111
ENECECQLL	9	Unmodified	_ENECECQLL_					0	0	0		nc|ENSG00000125864|Q12934-2|BFSP1;ENSG00000125864|ENST00000377873|BFSP1	nc|ENSG00000125864|Q12934-2|BFSP1	nc|ENSG00000125864|Q12934-2|BFSP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8425903320312	2	540.720449	1079.42635	0.58616	0.00031695	1.144	0.00061857	1.7301	0.00093552	540.7209862756158	72.81	0.46827	72.81	72.613	73.081	0					27	16	2	0	0	0	0.24848	1	18520	18520		13.906	7.1829	1	139460			7421	3240	3959	3959	9898	9898					-0.11019026919097996
ENEDSDLIL	9	Unmodified	_ENEDSDLIL_					0	0	0		ENST00000482320.5_1_7:128658104-128681743:-|nuORF	ENST00000482320.5_1_7:128658104-128681743:-|nuORF	ENST00000482320.5_1_7:128658104-128681743:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7872314453125	2	524.245669	1046.47678	0.57203	0.00029988	-1.9415	-0.0010178	-1.3695	-0.00071795	524.2447536354858	79.335	0.47724	79.397	79.141	79.618	0.061417					24	21	2	0	0	0	0.25417	1	20496	20496		8.5933	0	1	78284			7422	11044	3960	3960	9899	9899					-0.04459457998086691
ENEDSDLIL	9	Unmodified	_ENEDSDLIL_					0	0	0		ENST00000482320.5_1_7:128658104-128681743:-|nuORF	ENST00000482320.5_1_7:128658104-128681743:-|nuORF	ENST00000482320.5_1_7:128658104-128681743:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.245669	1046.47678	0.64991	0.00034071	-1.8793	-0.00098522	-1.2294	-0.00064451	524.2446083597763	79.456	0.41362	79.427	79.207	79.62	-0.028923	0.015293	1.5234E-05	NaN	8.5933	28	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133820			7423	11044	3960	3960							-0.04459457998086691
ENEKLSRGLS	10	Unmodified	_ENEKLSRGLS_					0	0	0		nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A	nc|ENSG00000090889|O95239-2|KIF4A	nc|ENSG00000090889|O95239-2|KIF4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2460327148438	2	566.801477	1131.5884	0.11315	6.4131E-05	-2.4679	-0.0013988	-2.3548	-0.0013347	566.8001967640095	18.411	0.42933	18.411	18.216	18.646	0					20	14	2	0	0	0	0.32101	1	1945	1945		2.4985	0.84587	1	49561			7424	1391	3961	3961	9900	9900					0.027870211497202035
ENEKVKTEV	9	Unmodified	_ENEKVKTEV_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2;ENST00000549974.5_1_12:105593149-105601775:-|nuORF;ENST00000549573.5_1_12:105591633-105601793:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.3110961914062	2	538.285128	1074.5557	0.55721	0.00029994	0.94659	0.00050954	1.5038	0.00080947	538.2856786555997	52.98	0.84591	52.98	52.382	53.228	0					42	30	2	0	0	0	0.24688	1	12357	12357		10.074	0	1	561470			7425	3937	3962	3962	9901	9901					0.0214081402687043
ENFKVQLEQ	9	Unmodified	_ENFKVQLEQ_					0	0	0			REV__ENSG00000100345|ENST00000216181|MYH9	REV__ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8290405273438	2	567.793121	1133.57169	0.23456	0.00013318	2.4284	0.0013788	2.6629	0.001512	567.7944130427902	52.283	1.6527	52.283	51.222	52.875	0					72	38	3	0	0	0	0.22674	1	12068	12068		22.736	8.8302	1	1237200	+		7426	14183	3963	3963	9902	9902					0.010245202637634065
ENFSNFFRIL	10	Unmodified	_ENFSNFFRIL_					0	0	0			REV__nc|ENSG00000105281|Q15758-3|SLC1A5	REV__nc|ENSG00000105281|Q15758-3|SLC1A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.23822021484375	3	429.555784	1285.64552	-0.022756	-9.7752E-06	-0.2942	-0.00012638	-0.31696	-0.00013615	429.55566116061254	38.537	0.60189	38.628	38.399	39.001	0.090881					45	21	3	0	0	0	0.31969	1	7977	7977		5.7834	2.1964	1	394560	+		7427	14447	3964	3964	9903	9903					0.014124884261036641
ENFSNFFRIL	10	Unmodified	_ENFSNFFRIL_					0	0	0			REV__nc|ENSG00000105281|Q15758-3|SLC1A5	REV__nc|ENSG00000105281|Q15758-3|SLC1A5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	429.555784	1285.64552	-0.38698	-0.00016623	-0.36488	-0.00015674	-0.75185	-0.00032296	429.555685938522	38.624	0.58335	38.624	38.32	38.903	0	-0.011571	-1.3947E-05	NaN	5.7834	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299520	+		7428	14447	3964	3964							0.014124884261036641
ENFSNFFRIL	10	Unmodified	_ENFSNFFRIL_					0	0	0			REV__nc|ENSG00000105281|Q15758-3|SLC1A5	REV__nc|ENSG00000105281|Q15758-3|SLC1A5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	429.555784	1285.64552	0.052001	2.2337E-05	-0.42302	-0.00018171	-0.37102	-0.00015938	429.5556521664865	38.558	0.51356	38.655	38.407	38.921	0.097527	0.019528	-8.8877E-05	NaN	5.7834	44	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388230	+		7429	14447	3964	3964							0.014124884261036641
ENGFLATRASS	11	Unmodified	_ENGFLATRASS_					0	0	0			REV__ENST00000424094.6_1_20:57394171-57417508:-|nuORF	REV__ENST00000424094.6_1_20:57394171-57417508:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.785400390625	2	576.785827	1151.5571	0.18738	0.00010808	-0.44955	-0.00025929	-0.26217	-0.00015121	576.7854050312028	23.465	0.49089	23.378	23.108	23.599	-0.08761					38	17	3	0	0	0	0.30475	1	3444	3444		21.799	5.6504	1	170260	+		7430	20887	3965	3965	9904	9904					-0.012615518843858808
ENGFLATRASS	11	Unmodified	_ENGFLATRASS_					0	0	0			REV__ENST00000424094.6_1_20:57394171-57417508:-|nuORF	REV__ENST00000424094.6_1_20:57394171-57417508:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.7855224609375	2	576.785827	1151.5571	0.25979	0.00014984	-0.46166	-0.00026628	-0.20187	-0.00011644	576.7853809989122	23.423	0.59245	23.378	23.167	23.759	-0.044867					36	20	3	0	0	0	0.37165	1	3436	3436		14.957	2.7165	1	218240	+		7431	20887	3965	3965	9905	9905					-0.012615518843858808
ENGFLATRASS	11	Unmodified	_ENGFLATRASS_					0	0	0			REV__ENST00000424094.6_1_20:57394171-57417508:-|nuORF	REV__ENST00000424094.6_1_20:57394171-57417508:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	576.785827	1151.5571	0.18738	0.00010808	-0.44955	-0.00025929	-0.26217	-0.00015121	576.7854050312028	23.465	0.49089	23.378	23.108	23.599	-0.08761	0.016625	-5.3452E-05	NaN	21.799	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170260	+		7432	20887	3965	3965							-0.012615518843858808
ENGLEWSINYK	11	Unmodified	_ENGLEWSINYK_					0	0	0			REV__nc|ENSG00000172987|Q8WWQ2-2|HPSE2	REV__nc|ENSG00000172987|Q8WWQ2-2|HPSE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.5541687011719	3	451.55422	1351.64083	0.30446	0.00013748	-0.18703	-8.4455E-05	0.11743	5.3028E-05	451.5540948547409	48.685	0.85662	48.685	48.386	49.243	0					77	30	4	0	0	0	0.33432	1	11180	11180		19.144	0.42272	1	3400500	+		7433	17754	3966	3966	9906	9906					-0.020924405073174057
ENGLEWSINYK	11	Unmodified	_ENGLEWSINYK_					0	0	0			REV__nc|ENSG00000172987|Q8WWQ2-2|HPSE2	REV__nc|ENSG00000172987|Q8WWQ2-2|HPSE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.5542907714844	3	451.55422	1351.64083	0.27385	0.00012366	-0.13542	-6.115E-05	0.13843	6.2507E-05	451.55412392222144	48.608	0.73721	48.64	48.359	49.096	0.032043					79	26	4	0	0	0	0.28064	1	11091	11091		23.964	0.16309	1	3237800	+		7434	17754	3966	3966	9907	9907					-0.020924405073174057
ENIIQNLKF	9	Unmodified	_ENIIQNLKF_					0	0	0		ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2913818359375	2	559.813856	1117.61316	0.17366	9.7216E-05	2.7664	0.0015487	2.9401	0.0016459	559.8155474433601	61.794	0.40269	61.794	61.569	61.971	0					22	14	2	0	0	0	0.24993	1	15253	15253		8.7454	4.801	1	103940			7435	7878	3967	3967	9908	9908					0.05905701023084475
ENIIQNLKF	9	Unmodified	_ENIIQNLKF_					0	0	0		ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2913818359375	2	559.813856	1117.61316	-0.077963	-4.3645E-05	2.6789	0.0014997	2.6009	0.001456	559.8153342011246	61.598	0.33686	61.695	61.615	61.952	0.096985					18	11	2	0	0	0	0.24289	1	15190	15190		18.146	3.3081	1	129600			7436	7878	3967	3967	9909	9909					0.05905701023084475
ENIKQVPQKL	10	Unmodified	_ENIKQVPQKL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.810302734375	2	598.853512	1195.69247	0.33379	0.00019989	0.15195	9.0997E-05	0.48575	0.00029089	598.8534092433615	67.713	0.37899	67.697	67.562	67.941	-0.016296					20	12	2	0	0	0	0.31958	1	16975	16975		5.2969	5.2969	1	153910			7437	3575	3968	3968	9910	9910					0.10245347977252095
ENIKQVPQKL	10	Unmodified	_ENIKQVPQKL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	598.853512	1195.69247	0.48251	0.00028895	-0.14397	-8.6215E-05	0.33854	0.00020274	598.8532259359017	67.779	0.43634	67.779	67.561	67.997	0	0.020758	2.4519E-05	NaN	5.2969	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151740			7438	3575	3968	3968							0.10245347977252095
ENIKQVPQKL	10	Unmodified	_ENIKQVPQKL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	598.853512	1195.69247	0.65319	0.00039117	-0.33546	-0.00020089	0.31773	0.00019028	598.8533507847019	67.721	0.48766	67.799	67.488	67.975	0.078041	0.04064	-0.00020483	NaN	5.2969	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134920			7439	3575	3968	3968							0.10245347977252095
ENIPRVTDV	9	Unmodified	_ENIPRVTDV_					0	0	0		ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.253173828125	2	521.780013	1041.54547	0.48882	0.00025505	1.7711	0.00092415	2.26	0.0011792	521.7843369038433	88.222	0.54516	88.22	87.994	88.539	-0.0028381					67	27	3	0	0	0	0.20167	1	23268	23268		29.082	6.3453	1	318530			7440	7091	3969	3969	9911	9911					0.026362510922808724
ENIRVSSAKKT	11	Unmodified	_ENIRVSSAKKT_					0	0	0		ENST00000461762.5_1_9:132591268-132595829:-|nuORF;ENSG00000136819|ENST00000372447|C9orf78	ENST00000461762.5_1_9:132591268-132595829:-|nuORF	ENST00000461762.5_1_9:132591268-132595829:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2467041015625	3	411.570093	1231.68845	-0.071327	-2.9356E-05	0.70089	0.00028846	0.62956	0.00025911	411.5704924392511	24.803	0.58772	24.803	24.423	25.011	0					26	19	2	0	0	0	0.33175	1	3869	3869		2.2527	0	1	30707			7441	4000	3970	3970	9912	9912					0.08187258483530968
ENKNPNIVNY	10	Unmodified	_ENKNPNIVNY_					0	0	0		ENSG00000077264|ENST00000372007|PAK3;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3;ENST00000532711.1_1_11:77047303-77054976:-|nuORF	ENSG00000077264|ENST00000372007|PAK3	ENSG00000077264|ENST00000372007|PAK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8037719726562	2	602.801477	1203.5884	0.21682	0.0001307	-1.5636	-0.00094257	-1.3468	-0.00081187	602.8008045769662	67.146	1.1761	67.13	66.814	67.991	-0.016296					71	40	2	0	0	0	0.21644	1	16843	16843		30.637	0	1	421720			7442	1084	3971	3971	9913	9913					-0.005249788502851516
ENKSVAGLTMT	11	Unmodified	_ENKSVAGLTMT_					0	0	0		ENSG00000134538|ENST00000256958|SLCO1B1	ENSG00000134538|ENST00000256958|SLCO1B1	ENSG00000134538|ENST00000256958|SLCO1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.84326171875	2	575.792263	1149.56997	0.18851	0.00010854	-0.40492	-0.00023315	-0.21641	-0.00012461	576.2933139329818	111.73	0.27708	111.75	111.7	111.98	0.0131					49	32	2	0	0	0	0.42762	2	29080	29080;29120		7.609	1.8771	1	78653			7443	3794	3972	3972	9914;9915	9914					0.0011714318347912922
ENKVKVLRGPQ	11	Unmodified	_ENKVKVLRGPQ_					0	0	0			REV__ENSG00000039123|ENST00000230640|MTREX	REV__ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3789672851562	2	634.377686	1266.74082	0.22787	0.00014455	-0.18084	-0.00011472	0.047024	2.9831E-05	634.3777797867066	103.27	1.9164	103.27	102.78	104.7	0.0082703					426	271	3	0	0	0	0.46655	1	27791	27791		2.4985	1.0166	1	38547000	+		7444	13519	3973	3973	9916	9916					0.11811841617145546
ENKVKVLRGPQ	11	Unmodified	_ENKVKVLRGPQ_					0	0	0			REV__ENSG00000039123|ENST00000230640|MTREX	REV__ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3787841796875	2	634.377686	1266.74082	0.45841	0.00029081	-0.49697	-0.00031527	-0.038558	-2.446E-05	634.3779395780009	105.21	0.44441	105.22	104.97	105.41	0.0031738					96	66	2	0	0	0	0.46655	3	27883	27883;27907;27909		2.4985	1.0166	1	190430	+		7445	13519	3973	3973	9917;9918;9919	9917					0.11811841617145546
ENKVKVLRGPQ	11	Unmodified	_ENKVKVLRGPQ_					0	0	0			REV__ENSG00000039123|ENST00000230640|MTREX	REV__ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3783569335938	2	634.377686	1266.74082	0.45834	0.00029076	-0.078431	-4.9755E-05	0.37991	0.00024101	634.3783013347212	106.04	0.26144	106.04	105.94	106.2	0.0031738					61	38	2	0	0	0	0.46655	1	28092	28092		2.4985	0	1	157480	+		7446	13519	3973	3973	9920	9920					0.11811841617145546
ENLGPKPTIFG	11	Unmodified	_ENLGPKPTIFG_					0	0	0		ENSG00000178795|ENST00000315938|GDPD4;nc|ENSG00000178795|Q6W3E5|GDPD4	ENSG00000178795|ENST00000315938|GDPD4	ENSG00000178795|ENST00000315938|GDPD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8341674804688	2	586.819138	1171.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.842	1	80.907	80.407	81.407	0.065094								0	0	0	0.36137	1	21020	21020		5.7319	0	1				7447	7077	3974	3974	9921	9921					0.04477683677509958
ENLLLEQQ	8	Unmodified	_ENLLLEQQ_					0	0	0		ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENST00000354752.5_1_9:99942307-99949763:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2791748046875	2	493.761289	985.508025	0.42164	0.00020819	-0.13008	-6.423E-05	0.29156	0.00014396	493.7626120068038	82.07	0.58942	82.07	81.769	82.358	0					27	21	2	0	0	0	0.34039	1	21485	21485		15.847	1.0089	1	195580			7448	9599	3975	3975	9922	9922					0.014691598266722394
ENLNSRFLVQ	10	Unmodified	_ENLNSRFLVQ_					0	0	0		ENST00000328965.8_2_11:120100260-120100626:+|nuORF	ENST00000328965.8_2_11:120100260-120100626:+|nuORF	ENST00000328965.8_2_11:120100260-120100626:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.3377075195312	2	610.325119	1218.63569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.297	1	51.297	50.797	51.797	0								0	0	0	0.34897	1	11960	11960		15.248	1.3424	1				7449	9436	3976	3976	9923	9923					0.035113004207232734
ENMTDGSVPF	10	Unmodified	_ENMTDGSVPF_					0	0	0		ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2698974609375	2	548.734414	1095.45428	0.83152	0.00045628	0.98084	0.00053822	1.8124	0.0009945	548.7351535219273	50.545	0.60021	50.545	50.296	50.896	0					33	21	2	0	0	0	0.31482	1	11696	11696		11.64	0.81637	1	261530			7450	5234	3977	3977	9924	9924					-0.0896338066734188
ENNHLNMLR	9	Unmodified	_ENNHLNMLR_					0	0	0			REV__ENSG00000188064|ENST00000339464|WNT7B	REV__ENSG00000188064|ENST00000339464|WNT7B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7828979492188	2	570.782564	1139.55058	0.15992	9.1281E-05	1.1699	0.00066776	1.3298	0.00075904	570.7834361057957	28.451	0.7584	28.446	27.994	28.752	-0.0042572					52	26	3	0	0	0	0.30064	1	4900	4900		8.7454	0.83525	1	295110	+		7451	18539	3978	3978	9925	9925					-0.013617683167467476
ENNHLNMLR	9	Unmodified	_ENNHLNMLR_					0	0	0			REV__ENSG00000188064|ENST00000339464|WNT7B	REV__ENSG00000188064|ENST00000339464|WNT7B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	570.782564	1139.55058	0.15992	9.1281E-05	1.1699	0.00066776	1.3298	0.00075904	570.7834361057957	28.451	0.7584	28.446	27.994	28.752	-0.0042572	0.01884	-4.2232E-05	NaN	8.7454	52	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295110	+		7452	18539	3978	3978							-0.013617683167467476
ENNHLNMLR	9	Unmodified	_ENNHLNMLR_					0	0	0			REV__ENSG00000188064|ENST00000339464|WNT7B	REV__ENSG00000188064|ENST00000339464|WNT7B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	570.782564	1139.55058	-0.05375	-3.0679E-05	1.2856	0.0007338	1.2318	0.00070312	570.7834455672875	28.38	0.75259	28.38	27.992	28.745	0.0004673	-0.047245	8.9831E-05	NaN	8.7454	52	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289130	+		7453	18539	3978	3978							-0.013617683167467476
ENNPPRFTF	9	Unmodified	_ENNPPRFTF_					0	0	0			REV__ENSG00000134716|ENST00000371204|CYP2J2	REV__ENSG00000134716|ENST00000371204|CYP2J2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.784423828125	2	561.272355	1120.53016	0.4416	0.00024786	0.92918	0.00052153	1.3708	0.00076938	561.2742204955573	49.767	0.74992	49.811	49.593	50.343	0.044891					50	28	3	0	0	0	0.28128	1	11574	11574		11.64	1.5664	1	413940	+		7454	15694	3979	3979	9926	9926					-0.025286157049322355
ENPDHVTTV	9	Unmodified	_ENPDHVTTV_					0	0	0		nc|ENSG00000244694|Q6ZW05-4|PTCHD4;ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4	nc|ENSG00000244694|Q6ZW05-4|PTCHD4	nc|ENSG00000244694|Q6ZW05-4|PTCHD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2850341796875	2	506.240721	1010.46689	0.96673	0.0004894	-0.012064	-6.1074E-06	0.95467	0.00048329	506.24052092580615	56.405	0.2168	56.386	56.267	56.483	-0.019077					11	7	2	0	0	0	0.2451	1	13561	13561		6.7232	1.9672	1	253980			7455	8575	3980	3980	9927	9927					-0.037926012127968534
ENQQPEGRS	9	Unmodified	_ENQQPEGRS_					0	0	0		ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7592163085938	2	522.738877	1043.4632	-0.22529	-0.00011777	-2.2004	-0.0011502	-2.4257	-0.001268	522.7377078868903	34.421	0.30991	34.421	34.336	34.646	0					13	10	2	0	0	0	0.25431	1	6771	6771		9.3831	1.473	1	57117			7456	2355	3981	3981	9928	9928					-0.05679270986661322
ENQSFLFNFL	10	Unmodified	_ENQSFLFNFL_					0	0	0			REV__ENST00000583011.5_1_17:8285617-8286501:-|nuORF	REV__ENST00000583011.5_1_17:8285617-8286501:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.2762451171875	2	629.808771	1257.60299	0.16022	0.00010091	1.1961	0.00075333	1.3563	0.00085424	629.8096865554028	59.278	0.4971	59.369	59.077	59.574	0.091301					25	17	2	0	0	0	0.3144	1	14396	14396		13.042	0	1	216650	+		7457	22496	3982	3982	9929	9929					-0.015509067021412193
ENQSFLFNFL	10	Unmodified	_ENQSFLFNFL_					0	0	0			REV__ENST00000583011.5_1_17:8285617-8286501:-|nuORF	REV__ENST00000583011.5_1_17:8285617-8286501:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.8097534179688	2	629.808771	1257.60299	0.68401	0.0004308	0.0056855	3.5808E-06	0.6897	0.00043438	629.8087904092534	60.849	0.37222	60.839	60.596	60.968	-0.0094566					34	13	3	0	0	0	0.24105	1	14927	14927		27.629	0	1	1081200	+		7458	22496	3982	3982	9930	9930					-0.015509067021412193
ENQYIYAGDI	10	Unmodified	_ENQYIYAGDI_					0	0	0			REV__AKR1D1|p.R261Hfs*15|1|0.04|ENSG00000122787|chr7:138107506-138107507|-/ATAATGA|frameshift_variant	REV__AKR1D1|p.R261Hfs*15|1|0.04|ENSG00000122787|chr7:138107506-138107507|-/ATAATGA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8290405273438	2	593.274761	1184.53497	0.81641	0.00048436	-0.33763	-0.00020031	0.47878	0.00028405	593.2742915325795	77.649	0.54678	77.704	77.43	77.977	0.055412					43	19	3	0	0	0	0.22377	1	20080	20080		43.772	12.504	1	305470	+		7459	13096	3983	3983	9931	9931					-0.049917763527901116
ENQYVVRSKE	10	Unmodified	_ENQYVVRSKE_					0	0	0			REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.3202514648438	2	626.320034	1250.62551	-0.19787	-0.00012393	0.75089	0.00047029	0.55302	0.00034637	626.3203265165706	31.079	0.46123	31.107	30.896	31.358	0.027946					39	16	3	0	0	0	0.33036	1	5755	5755		18.373	3.1246	1	437060	+		7460	17840	3984	3984	9932	9932					0.010226926954601367
ENQYVVRSKE	10	Unmodified	_ENQYVVRSKE_					0	0	0			REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	626.320034	1250.62551	-0.19787	-0.00012393	0.75089	0.00047029	0.55302	0.00034637	626.3203265165706	31.079	0.46123	31.107	30.896	31.358	0.027946	0.037522	0.00055679	NaN	18.373	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437060	+		7461	17840	3984	3984							0.010226926954601367
ENRFILQE	8	Unmodified	_ENRFILQE_					0	0	0		ENSG00000164241|ENST00000296662|C5orf63	ENSG00000164241|ENST00000296662|C5orf63	ENSG00000164241|ENST00000296662|C5orf63	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2987060546875	2	524.774731	1047.53491	0.15977	8.3842E-05	-0.40648	-0.00021331	-0.24671	-0.00012947	524.7744910616275	12.752	0.29318	12.653	12.521	12.814	-0.09929					16	9	3	0	0	0	0.34367	1	183	183		4.3292	0.38484	1	68412			7462	5816	3985	3985	9933	9933					0.013042684378660852
ENRKAEYT	8	Unmodified	_ENRKAEYT_					0	0	0			REV__ENST00000512575.5_1_4:77871042-77955662:+|nuORF	REV__ENST00000512575.5_1_4:77871042-77955662:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.23388671875	2	505.748713	1009.48287	0.10138	5.1274E-05	-0.30078	-0.00015212	-0.1994	-0.00010085	505.7486839962721	19.077	0.56579	19.077	18.895	19.461	0					38	19	4	0	0	0	0.34408	1	2225	2225		2.3027	0.24298	1	74003	+		7463	15260	3986	3986	9934	9934					-0.021488949759145726
ENSLKINK	8	Unmodified	_ENSLKINK_					0	0	0		nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.2715148925781	2	473.271824	944.529095	-0.15795	-7.4753E-05	-0.77299	-0.00036583	-0.93094	-0.00044059	473.2715858907029	13.955	0.27835	13.851	13.713	13.991	-0.10466					24	9	3	0	0	0	0.45307	1	591	591		4.756	0	1	82019			7464	7174	3987	3987	9935	9935					0.054611699261727153
ENSLLPSLEEA	11	Unmodified	_ENSLLPSLEEA_					0	0	0			REV__ENST00000532148.5_1_14:61447983-61468748:+|nuORF	REV__ENST00000532148.5_1_14:61447983-61468748:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8262939453125	2	601.300975	1200.5874	0.62431	0.0003754	4.4335	0.0026659	5.0578	0.0030413	601.3035582389946	88.418	0.12332	88.418	88.364	88.487	0					10	6	2	0	0	0	0.33119	1	23345	23345		5.7319	0	1	33258	+		7465	16017	3988	3988	9936	9936					-0.004872380098277063
ENSSGLKYK	9	Unmodified	_ENSSGLKYK_					0	0	0		ENSG00000189337|ENST00000376030|KAZN	ENSG00000189337|ENST00000376030|KAZN	ENSG00000189337|ENST00000376030|KAZN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2681274414062	2	513.266739	1024.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.558	1	95.558	95.058	96.058	0								0	0	0	0.24715	1	25509	25509		7.2892	0.56607	1				7466	7812	3989	3989	9937	9937					0.007645622009476938
ENTIAFRHLF	10	Unmodified	_ENTIAFRHLF_					0	0	0		ENSG00000090674|ENST00000264079|MCOLN1;ENST00000596008.1_1_19:7591330-7591862:+|nuORF;ENST00000394321.9_1_19:7587636-7592563:+|nuORF	ENSG00000090674|ENST00000264079|MCOLN1	ENSG00000090674|ENST00000264079|MCOLN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.30810546875	2	624.330205	1246.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.172	1	47.225	46.725	47.725	0.052574								0	0	0	0.3593	1	10688	10688		12.241	1.4167	1				7467	1386	3990	3990	9938	9938					0.032399081459288936
ENVTPINKL	9	Unmodified	_ENVTPINKL_					0	0	0			REV__ENSG00000139329|ENST00000266718|LUM	REV__ENSG00000139329|ENST00000266718|LUM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.82568359375	2	514.292756	1026.57096	-0.022594	-1.162E-05	0.64769	0.0003331	0.6251	0.00032148	514.7951831225829	12.902	0.64532	12.902	12.582	13.227	0					31	22	2	0	0	0	0.25988	1	305	305		3.9444	0	1	139560	+		7468	15981	3991	3991	9939	9939					0.058737256147196604
ENVYFFPF	8	Unmodified	_ENVYFFPF_					0	0	0		ENST00000594496.5_1_19:6414689-6414863:-|nuORF	ENST00000594496.5_1_19:6414689-6414863:-|nuORF	ENST00000594496.5_1_19:6414689-6414863:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3035278320312	2	531.750193	1061.48583	0.5452	0.00028991	-0.25188	-0.00013394	0.29332	0.00015597	531.7501900113566	62.381	0.4035	62.372	62.167	62.57	-0.0085564					22	14	2	0	0	0	0.34046	1	15340	15340		5.2307	0	1	120220			7469	12214	3992	3992	9940	9940					-0.04245019851100551
ENWNKVSENT	10	Unmodified	_ENWNKVSENT_					0	0	0		nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.210693359375	3	407.52292	1219.54693	-0.096997	-3.9528E-05	-2.6467	-0.0010786	-2.7437	-0.0011181	407.5218954398389	17.126	0.26092	17.126	16.925	17.186	0					12	8	2	0	0	0	0.3213	1	1552	1552		1.9064	0.71303	1	25608			7470	7889	3993	3993	9941	9941					-0.0540615960960622
ENYIEVPLI	9	Unmodified	_ENYIEVPLI_					0	0	0		ENST00000485335.1_1_2:102640001-102644851:+|nuORF;ENST00000474085.5_1_2:102638602-102644851:+|nuORF;ENSG00000115590|ENST00000332549|IL1R2	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3163452148438	2	545.294965	1088.57538	0.73582	0.00040124	-0.63883	-0.00034835	0.096991	5.2889E-05	545.2946534428743	85.683	2.0067	85.768	85.132	87.139	0.084251					95	71	2	0	0	0	0.2422	1	22483	22483		14.405	0	1	289120			7471	2660	3994	3994	9942	9942					0.034631900376325575
ENYPHFFL	8	Unmodified	_ENYPHFFL_					0	0	0		ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7537841796875	2	533.753267	1065.49198	0.7456	0.00039797	0.11963	6.3855E-05	0.86524	0.00046182	533.7531928357339	83.218	1.3316	83.218	82.462	83.794	0					121	49	4	0	0	0	0.27124	3	21769	21726;21769;21815		34.102	28.487	1	2571100			7472	8007	3995	3995	9943;9944;9945	9944					-0.038145016195812786
ENYPHFFL	8	Unmodified	_ENYPHFFL_					0	0	0		ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.75341796875	2	533.753267	1065.49198	0.48147	0.00025699	0.41011	0.0002189	0.89158	0.00047588	533.753354481518	83.103	0.91106	83.176	82.801	83.712	0.073097					105	34	4	0	0	0	0.32038	3	21697	21697;21746;21794		28.487	7.6156	1	2631400			7473	8007	3995	3995	9946;9947;9948	9946					-0.038145016195812786
ENYPHFFL	8	Unmodified	_ENYPHFFL_					0	0	0		ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.75341796875	2	533.753267	1065.49198	0.65599	0.00035014	0.26271	0.00014022	0.9187	0.00049036	533.7532859305087	83.24	1.5316	83.219	82.252	83.784	-0.020576					140	62	4	0	0	0	0.25425	2	21725	21725;21814		36.044	7.871	1	3293600			7474	8007	3995	3995	9949;9950	9949					-0.038145016195812786
ENYRRSKKRLY	11	Unmodified	_ENYRRSKKRLY_					0	0	0			REV__ENSG00000173258|ENST00000309235|ZNF483	REV__ENSG00000173258|ENST00000309235|ZNF483	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.95147705078125	3	504.951308	1511.83209	0.019955	1.0076E-05	0.047843	2.4159E-05	0.067798	3.4235E-05	504.95139494648714	39.716	0.84	39.716	39.321	40.161	0					63	30	3	0	0	0	0.46842	1	8442	8442		2.2527	0	1	401380	+		7475	17774	3996	3996	9951	9951					0.09665105314456923
ENYRRSKKRLY	11	Unmodified	_ENYRRSKKRLY_					0	0	0			REV__ENSG00000173258|ENST00000309235|ZNF483	REV__ENSG00000173258|ENST00000309235|ZNF483	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	504.951308	1511.83209	0.25032	0.0001264	-0.10519	-5.3117E-05	0.14513	7.3284E-05	504.95127789939926	39.503	0.68661	39.596	39.307	39.994	0.09267	-0.053607	-4.5596E-05	NaN	2.2527	58	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513930	+		7476	17774	3996	3996							0.09665105314456923
ENYRRSKKRLY	11	Unmodified	_ENYRRSKKRLY_					0	0	0			REV__ENSG00000173258|ENST00000309235|ZNF483	REV__ENSG00000173258|ENST00000309235|ZNF483	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	504.951308	1511.83209	0.31522	0.00015917	-0.10621	-5.3631E-05	0.20901	0.00010554	504.95123932999127	39.537	0.82616	39.637	39.347	40.173	0.099407	-0.012564	-4.7139E-05	NaN	2.2527	68	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513780	+		7477	17774	3996	3996							0.09665105314456923
EPAALVAILI	10	Unmodified	_EPAALVAILI_					0	0	0		ENST00000290231.10_1_20:44708062-44718497:-|nuORF	ENST00000290231.10_1_20:44708062-44718497:-|nuORF	ENST00000290231.10_1_20:44708062-44718497:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.27142333984375	2	505.318243	1008.62193	0.49869	0.000252	-0.64233	-0.00032458	-0.14364	-7.2585E-05	505.3177093999376	79.12	0.43155	79.12	78.906	79.338	0					38	18	3	0	0	0	0.30586	1	20507	20507		19.257	1.1106	1	242450			7478	9150	3997	3997	9952	9952					0.11796674659569817
EPAHYMFVN	9	Unmodified	_EPAHYMFVN_					0	0	0			REV__ENSG00000042832|ENST00000220616|TG	REV__ENSG00000042832|ENST00000220616|TG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8302612304688	2	554.250034	1106.48552	0.43205	0.00023946	1.0044	0.00055669	1.4365	0.00079616	554.2500235710827	92.567	0.45515	92.568	92.349	92.804	0.00046539					64	30	3	0	0	0	0.25938	1	24587	24587		4.3292	0	1	166240	+		7479	13534	3998	3998	9953	9953					-0.06346762842576936
EPARSRHGP	9	Unmodified	_EPARSRHGP_					0	0	0			REV__nc|ENSG00000196535|Q92614-3|MYO18A	REV__nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.28839111328125	2	503.762489	1005.51043	0.18823	9.4821E-05	-0.42799	-0.0002156	-0.23976	-0.00012078	503.7624809907225	16.068	0.5415	16.005	15.756	16.298	-0.062534					46	18	3	0	0	0	0.25706	1	1296	1296		6.7232	6.7232	1	159780	+		7480	18659	3999	3999	9954	9954					0.007890530749932623
EPASGKAAL	9	Unmodified	_EPASGKAAL_					0	0	0		nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1	nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1	nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.57489013671875	2	422.232168	842.449782	-0.12402	-5.2365E-05	-3.5109	-0.0014824	-3.6349	-0.0015348	422.23143558402717	19.292	1.0333	19.176	18.947	19.981	-0.11592					58	35	3	0	0	0	0.24688	1	2208	2208		14.838	3.198	1	82492			7481	7468	4000	4000	9955	9955					0.022255229720371972
EPATWKVPL	9	Unmodified	_EPATWKVPL_					0	0	0			REV__nc|ENSG00000111816|P42685-2|FRK	REV__nc|ENSG00000111816|P42685-2|FRK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7926025390625	2	520.792392	1039.57023	0.38033	0.00019807	0.16467	8.5758E-05	0.54499	0.00028383	520.7923417917926	73.462	1.1066	73.433	72.954	74.06	-0.029297					106	39	4	0	0	0	0.17787	1	18843	18843		26.884	0	1	1808300	+		7482	14738	4001	4001	9956	9956					0.05202930965674568
EPCPEVHC	8	Unmodified	_EPCPEVHC_					0	0	0			REV__ENSG00000086619|ENST00000354619|ERO1B	REV__ENSG00000086619|ENST00000354619|ERO1B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.16412353515625	2	457.180763	912.346973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.603	1	24.603	24.103	25.103	0								0	0	0	0.36961	1	3800	3800		5.7604	1.4312	1		+		7483	13978	4002	4002	9957	9957					-0.11270629082582673
EPCRYGPT	8	Unmodified	_EPCRYGPT_					0	0	0			REV__nc|ENSG00000070476|Q2QGD7-2|ZXDC	REV__nc|ENSG00000070476|Q2QGD7-2|ZXDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.70843505859375	2	461.708002	921.401452	0.051454	2.3757E-05	0.4645	0.00021447	0.51596	0.00023822	461.70815612974314	70.993	1.2574	70.993	70.325	71.582	0					71	44	2	0	0	0	0.44734	1	18030	18030		6.7232	0.36906	1	564190	+		7484	13726	4003	4003	9958	9958					-0.062392939395067515
EPDDQCGELF	10	Unmodified	_EPDDQCGELF_					0	0	0			REV__nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	REV__nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8240356445312	2	576.729329	1151.4441	0.21528	0.00012416	1.5835	0.00091326	1.7988	0.0010374	576.7302637128532	62.754	0.39621	62.745	62.542	62.938	-0.0085526					22	14	2	0	0	0	0.3156	1	15459	15459		10.824	4.4698	1	225080	+		7485	15567	4004	4004	9959	9959					-0.12555988392591644
EPDLLLPYP	9	Unmodified	_EPDLLLPYP_					0	0	0			REV__nc|ENSG00000266094|Q8WWW0-3|RASSF5	REV__nc|ENSG00000266094|Q8WWW0-3|RASSF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2835693359375	2	528.784233	1055.55391	0.46442	0.00024558	1.0927	0.00057781	1.5571	0.00082338	528.7849098131624	16.551	0.40516	16.489	16.324	16.729	-0.062532					30	13	3	0	0	0	0.25526	1	1387	1387		7.9102	7.9102	1	104590	+		7486	19300	4005	4005	9960	9960					0.0283580500890821
EPEAAYRLI	9	Unmodified	_EPEAAYRLI_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2838745117188	2	531.284931	1060.55531	0.36512	0.00019398	-0.75631	-0.00040182	-0.3912	-0.00020784	531.2844637124936	49.363	0.60912	49.395	49.149	49.758	0.032043					35	21	2	0	0	0	0.13898	1	11374	11374		36.127	10.728	1	711580			7487	6727	4006	4006	9961	9961					0.02745439097657254
EPEAAYRLI	9	Unmodified	_EPEAAYRLI_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.284931	1060.55531	0.64264	0.00034142	-0.98975	-0.00052584	-0.34711	-0.00018442	531.28460859817	49.452	0.43191	49.452	49.218	49.65	0	0.009175	-0.00024258	NaN	36.127	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	732930			7488	6727	4006	4006							0.02745439097657254
EPEAAYRLI	9	Unmodified	_EPEAAYRLI_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	531.284931	1060.55531	0.34715	0.00018444	-0.51921	-0.00027585	-0.17206	-9.1415E-05	531.2847282083939	49.438	0.55889	49.483	49.266	49.825	0.044891	0.039328	0.0002574	NaN	36.127	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	771060			7489	6727	4006	4006							0.02745439097657254
EPEEHILDPRL	11	Unmodified	_EPEEHILDPRL_					0	0	0		ENST00000477827.1_1_22:39537236-39548449:-|nuORF;ENSG00000100307|ENST00000216133|CBX7	ENST00000477827.1_1_22:39537236-39548449:-|nuORF	ENST00000477827.1_1_22:39537236-39548449:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2663269042969	3	449.90162	1346.68303	0.046739	2.1028E-05	-0.20372	-9.1653E-05	-0.15698	-7.0625E-05	450.23557549206663	42.966	0.94765	43.057	42.47	43.417	0.091362					69	34	3	0	0	0	0.33169	1	9358	9358		3.8459	0	1	318980			7490	1566	4007	4007	9962	9962					0.02355534901039391
EPEPVARNKPG	11	Unmodified	_EPEPVARNKPG_					0	0	0			REV__ENST00000507035.2_1_5:134374548-134375597:-|nuORF	REV__ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.31787109375	2	597.317294	1192.62004	0.23471	0.0001402	1.0798	0.00064499	1.3145	0.00078519	597.8192093375732	45.991	0.51515	46.051	45.792	46.307	0.059837					36	18	3	0	0	0	0.33175	1	10295	10295		4.897	0.95262	1	432390	+		7491	21756	4008	4008	9963	9963					0.031430139036501714
EPEPVARNKPG	11	Unmodified	_EPEPVARNKPG_					0	0	0			REV__ENST00000507035.2_1_5:134374548-134375597:-|nuORF	REV__ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	597.317294	1192.62004	0.41705	0.00024911	0.37529	0.00022417	0.79233	0.00047327	597.3177368370497	46.181	0.59778	46.181	45.86	46.458	0	0.087963	-6.8673E-05	NaN	4.897	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365660	+		7492	21756	4008	4008							0.031430139036501714
EPEPVARNKPG	11	Unmodified	_EPEPVARNKPG_					0	0	0			REV__ENST00000507035.2_1_5:134374548-134375597:-|nuORF	REV__ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	597.317294	1192.62004	0.50564	0.00030203	0.26446	0.00015796	0.7701	0.00045999	597.8187201945696	45.983	0.61301	46.048	45.753	46.366	0.065048	-0.045339	-0.00020108	NaN	4.897	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307070	+		7493	21756	4008	4008							0.031430139036501714
EPEYDFQGL	9	Unmodified	_EPEYDFQGL_					0	0	0		nc|ENSG00000140993|Q6NT04-2|TIGD7;ENSG00000140993|ENST00000396862|TIGD7	nc|ENSG00000140993|Q6NT04-2|TIGD7	nc|ENSG00000140993|Q6NT04-2|TIGD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.79931640625	2	549.242929	1096.47131	0.10525	5.7806E-05	0.65868	0.00036177	0.76392	0.00041958	549.2432338899187	14.642	0.44648	14.642	14.478	14.925	0					22	15	2	0	0	0	0.26168	1	848	848		1.8442	0	1	47209			7494	4349	4009	4009	9964	9964					-0.07307136789881952
EPFADFHRV	9	Unmodified	_EPFADFHRV_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2750854492188	2	559.274898	1116.53524	0.18598	0.00010401	0.72427	0.00040507	0.91025	0.00050908	559.2748755332602	41.502	0.49948	41.502	41.096	41.596	0					33	18	3	0	0	0	0.12279	1	8922	8922		34.932	23.437	1	1110300			7495	4064	4010	4010	9965	9965					-0.018363118422939806
EPFADFHRV	9	Unmodified	_EPFADFHRV_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2752685546875	2	559.274898	1116.53524	0.25982	0.00014531	0.57972	0.00032422	0.83954	0.00046954	559.2748298233957	41.186	0.47955	41.277	41.002	41.482	0.090248					44	17	3	0	0	0	0.12279	2	8837	8837;8888		34.932	24.858	1	886460			7496	4064	4010	4010	9966;9967	9966					-0.018363118422939806
EPFADFHRV	9	Unmodified	_EPFADFHRV_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2745361328125	2	559.274898	1116.53524	0.11372	6.36E-05	0.91381	0.00051107	1.0275	0.00057467	559.2748771629238	41.083	0.53892	41.18	40.909	41.448	0.096626					57	19	4	0	0	0	0.12279	2	8807	8807;8843		34.932	23.292	1	931950			7497	4064	4010	4010	9968;9969	9968					-0.018363118422939806
EPFELIELY	9	Unmodified	_EPFELIELY_					0	0	0			REV__ENST00000525109.1_1_15:66585988-66599106:+|nuORF	REV__ENST00000525109.1_1_15:66585988-66599106:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.7847900390625	2	576.794798	1151.57504	0.38384	0.0002214	2.3287	0.0013432	2.7126	0.0015646	576.7959664332303	87.013	0.23504	87.008	86.911	87.147	-0.0056229					11	8	2	0	0	0	0.30166	1	22932	22932		8.5933	0.68312	1	76812	+		7498	17350	4011	4011	9970	9970					0.005317703177752264
EPFGASVTI	9	Unmodified	_EPFGASVTI_					0	0	0		ENST00000498171.5_1_22:20077477-20097628:+|nuORF;ENST00000495826.5_1_22:20074657-20094820:+|nuORF;ENSG00000128191|ENST00000351989|DGCR8	ENST00000498171.5_1_22:20077477-20097628:+|nuORF	ENST00000498171.5_1_22:20077477-20097628:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.2474670410156	2	460.739825	919.465098	0.051883	2.3905E-05	-0.28634	-0.00013193	-0.23446	-0.00010802	460.73993244988833	63.119	0.64645	63.119	62.718	63.364	0					50	23	3	0	0	0	0.11486	1	15588	15588		39.957	0	1	568310			7499	3351	4012	4012	9971	9971					0.002143897692462815
EPFGGAIII	9	Unmodified	_EPFGGAIII_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61091835-61095006:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.760498046875	2	458.760561	915.506569	0.46984	0.00021555	-0.66689	-0.00030594	-0.19705	-9.0398E-05	458.76032950121197	77.783	2.1263	77.783	76.931	79.057	0					185	80	4	0	0	0	0.0034367	3	20088	20038;20088;20135		98.807	27.943	1	5172600			7500	259;11688	4013	4013	9972;9973;9974	9973					0.04543570528562668
EPFGGAIII	9	Unmodified	_EPFGGAIII_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61091835-61095006:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	458.760561	915.506569	0.47783	0.00021921	-0.61106	-0.00028033	-0.13324	-6.1123E-05	458.76032738244373	77.724	1.7247	77.78	77.43	79.155	0.055412	-0.0036278	5.717E-05	NaN	98.807	160	65	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5253600			7501	259;11688	4013	4013							0.04543570528562668
EPFGGAIII	9	Unmodified	_EPFGGAIII_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61091835-61095006:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	458.760561	915.506569	0.66303	0.00030417	-0.72507	-0.00033263	-0.062043	-2.8463E-05	458.7602677698035	77.818	1.8049	77.787	77.375	79.18	-0.031334	0.0034318	-4.7435E-05	NaN	98.807	163	69	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4969200			7502	259;11688	4013	4013							0.04543570528562668
EPFHSILSV	9	Unmodified	_EPFHSILSV_					0	0	0		ENSG00000163382|ENST00000368235|NAXE;nc|ENSG00000163382|Q8NCW5-2|NAXE	ENSG00000163382|ENST00000368235|NAXE	ENSG00000163382|ENST00000368235|NAXE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2661743164062	2	514.7742	1027.53385	-0.045172	-2.3254E-05	0.011745	6.046E-06	-0.033427	-1.7208E-05	514.7741936273843	59.929	0.55259	59.929	59.675	60.228	0					25	19	2	0	0	0	0.11486	1	14685	14685		48.346	6.2513	1	611180			7503	5673	4014	4014	9975	9975					0.021180540689329064
EPFHSILSV	9	Unmodified	_EPFHSILSV_					0	0	0		ENSG00000163382|ENST00000368235|NAXE;nc|ENSG00000163382|Q8NCW5-2|NAXE	ENSG00000163382|ENST00000368235|NAXE	ENSG00000163382|ENST00000368235|NAXE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.26611328125	2	514.7742	1027.53385	-0.27188	-0.00013996	0.57071	0.00029379	0.29883	0.00015383	514.774446403026	59.817	0.52724	59.912	59.578	60.105	0.095093					23	18	2	0	0	0	0.17611	1	14635	14635		34.102	5.6156	1	657680			7504	5673	4014	4014	9976	9976					0.021180540689329064
EPFIFHEV	8	Unmodified	_EPFIFHEV_					0	0	0		ENSG00000152443|ENST00000317178|ZNF776	ENSG00000152443|ENST00000317178|ZNF776	ENSG00000152443|ENST00000317178|ZNF776	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2552490234375	2	509.255643	1016.49673	0.36358	0.00018516	-0.075157	-3.8274E-05	0.28842	0.00014688	509.25543435569233	58.765	0.74122	58.765	58.5	59.241	0					57	25	4	0	0	0	0.41758	1	14252	14252		16.942	2.3606	1	1177400			7505	5021	4015	4015	9977	9977					-0.010856174768150595
EPFLYIDTV	9	Unmodified	_EPFLYIDTV_					0	0	0		nc|ENSG00000106565|Q3YBM2-2|TMEM176B;ENSG00000106565|ENST00000326442|TMEM176B	nc|ENSG00000106565|Q3YBM2-2|TMEM176B	nc|ENSG00000106565|Q3YBM2-2|TMEM176B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7811889648438	2	548.78169	1095.54883	0.46334	0.00025427	-1.2405	-0.00068079	-0.7772	-0.00042651	548.780994547797	79.622	0.99403	79.622	79.103	80.097	0					107	38	4	0	0	0	0.00014409	2	20634	20634;20682		133.7	78.928	1	1731100			7506	2084	4016	4016	9978;9979	9978					0.004875011462672774
EPFYIPDK	8	Unmodified	_EPFYIPDK_					0	0	0		ENSG00000083123|ENST00000320393|BCKDHB;ENST00000491328.1_1_6:81053374-81053518:+|nuORF	ENSG00000083123|ENST00000320393|BCKDHB	ENSG00000083123|ENST00000320393|BCKDHB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.80108642578125	2	504.755475	1007.4964	0.20583	0.00010389	-1.8706	-0.0009442	-1.6648	-0.00084031	504.75441714151185	16.481	0.28059	16.481	16.267	16.548	0					15	9	2	0	0	0	0.34408	1	1285	1285		2.3027	0.24298	1	27732			7507	1215	4017	4017	9980	9980					-0.007050371966670355
EPFYIPDK	8	Unmodified	_EPFYIPDK_					0	0	0		ENSG00000083123|ENST00000320393|BCKDHB;ENST00000491328.1_1_6:81053374-81053518:+|nuORF	ENSG00000083123|ENST00000320393|BCKDHB	ENSG00000083123|ENST00000320393|BCKDHB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	504.755475	1007.4964	0.28141	0.00014204	-0.9313	-0.00047008	-0.64989	-0.00032804	504.7542932950394	16.555	0.2021	16.492	16.324	16.526	-0.062532	0.0056405	0.00073821	NaN	2.3027	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30009			7508	1215	4017	4017							-0.007050371966670355
EPGLGNPRR	9	Unmodified	_EPGLGNPRR_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.27301025390625	2	498.27269	994.530826	0.18538	9.2368E-05	0.34022	0.00016952	0.5256	0.00026189	498.27303138474946	17.82	0.60535	17.702	17.545	18.151	-0.11739					37	20	3	0	0	0	0.33276	1	1756	1756		3.9444	0	1	52343	+		7509	16503	4018	4018	9981	9981					0.03334223734805164
EPGLGNPRR	9	Unmodified	_EPGLGNPRR_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.27423095703125	2	498.27269	994.530826	0.20717	0.00010323	1.134	0.00056502	1.3411	0.00066825	498.2735001953801	17.728	0.63858	17.668	17.53	18.169	-0.060429					35	22	2	0	0	0	0.33276	1	1730	1730		3.9444	0	1	40482	+		7510	16503	4018	4018	9982	9982					0.03334223734805164
EPGLGNPRR	9	Unmodified	_EPGLGNPRR_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	498.27269	994.530826	0.31902	0.00015896	0.47451	0.00023644	0.79353	0.0003954	498.2732315910843	17.632	0.54716	17.632	17.477	18.024	0	-0.035183	-9.0868E-05	NaN	3.9444	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52069	+		7511	16503	4018	4018							0.03334223734805164
EPGLGNPRR	9	Unmodified	_EPGLGNPRR_					0	0	0			REV__ENSG00000150594|ENST00000280155|ADRA2A	REV__ENSG00000150594|ENST00000280155|ADRA2A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	498.27269	994.530826	0.18538	9.2368E-05	0.34022	0.00016952	0.5256	0.00026189	498.27303138474946	17.82	0.60535	17.702	17.545	18.151	-0.11739	0.034735	-0.0002247	NaN	3.9444	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52343	+		7512	16503	4018	4018							0.03334223734805164
EPGRYKYCLL	10	Unmodified	_EPGRYKYCLL_					0	0	0			REV__nc|ENSG00000118162|Q9Y664-2|KPTN	REV__nc|ENSG00000118162|Q9Y664-2|KPTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8974304199219	3	414.549753	1240.62743	-0.11641	-4.8257E-05	-4.4459	-0.0018431	-4.5623	-0.0018913	414.54793547256793	18.719	0.39596	18.66	18.341	18.737	-0.058174					22	13	2	0	0	0	0.32051	1	1961	1961		1.9064	0.45126	1	23076	+		7513	15000	4019	4019	9983	9983					0.016740301797426582
EPHMPLLSI	9	Unmodified	_EPHMPLLSI_					0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7509155273438	2	518.778428	1035.5423	0.017284	8.9665E-06	1.2208	0.00063332	1.2381	0.00064229	518.7789638311566	18.368	0.3925	18.309	17.98	18.372	-0.058174					20	13	2	0	0	0	0.2451	1	1892	1892		15.847	4.2069	1	317360			7514	7188	4020	4020	9984	9984					0.02595284713925139
EPHPLLVKE	9	Unmodified	_EPHPLLVKE_					0	0	0		nc|ENSG00000049541|P35250-2|RFC2;ENSG00000049541|ENST00000055077|RFC2	nc|ENSG00000049541|P35250-2|RFC2	nc|ENSG00000049541|P35250-2|RFC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3436279296875	2	531.303124	1060.5917	0.15013	7.9766E-05	-0.88451	-0.00046994	-0.73437	-0.00039018	531.3021476902719	12.793	0.31863	12.793	12.555	12.874	0					15	8	3	0	0	0	0.25843	1	206	206		5.7319	1.4026	1	31079			7515	652	4021	4021	9985	9985					0.06382315994369492
EPHTLLPL	8	Unmodified	_EPHTLLPL_					0	0	0			REV__ENST00000426216.6_1_18:77105468-77105775:+|nuORF	REV__ENST00000426216.6_1_18:77105468-77105775:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.2258605957031	2	460.26601	918.517468	0.34595	0.00015923	-0.26979	-0.00012417	0.076165	3.5056E-05	460.265790106921	54.226	0.65292	54.21	53.978	54.631	-0.015923					36	22	2	0	0	0	0.29134	1	12855	12855		34.187	6.0141	1	288020	+		7516	20898	4022	4022	9986	9986					0.054949729028635375
EPIAIGLLI	9	Unmodified	_EPIAIGLLI_					0	0	0		ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7997131347656	2	469.799686	937.584819	0.29945	0.00014068	0.10354	4.8641E-05	0.40299	0.00018932	469.79957866165876	88.034	0.8469	88.031	87.736	88.583	-0.0028381					105	44	3	0	0	0	0.040195	1	23227	23227		56.541	2.9657	1	1534000			7517	1845	4023	4023	9987	9987					0.11353003113799787
EPIEILPNV	9	Unmodified	_EPIEILPNV_					0	0	0		ENSG00000064726|ENST00000261721|BTBD1	ENSG00000064726|ENST00000261721|BTBD1	ENSG00000064726|ENST00000261721|BTBD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2897338867188	2	512.289682	1022.56481	0.092041	4.7152E-05	0.86257	0.00044189	0.95461	0.00048904	512.2896275376883	73.63	0.61178	73.63	73.281	73.893	0					76	21	5	0	0	0	0.14961	1	18829	18829		41.84	17.819	1	444210			7518	796	4024	4024	9988	9988					0.05443207383189019
EPIEILPNV	9	Unmodified	_EPIEILPNV_					0	0	0		ENSG00000064726|ENST00000261721|BTBD1	ENSG00000064726|ENST00000261721|BTBD1	ENSG00000064726|ENST00000261721|BTBD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2898559570312	2	512.289682	1022.56481	0.1454	7.4485E-05	0.28461	0.0001458	0.43001	0.00022029	512.2897627129538	73.53	0.49137	73.584	73.335	73.827	0.053841					46	17	3	0	0	0	0.11461	1	18783	18783		36.127	7.0454	1	341020			7519	796	4024	4024	9989	9989					0.05443207383189019
EPIEILPNV	9	Unmodified	_EPIEILPNV_					0	0	0		ENSG00000064726|ENST00000261721|BTBD1	ENSG00000064726|ENST00000261721|BTBD1	ENSG00000064726|ENST00000261721|BTBD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.289794921875	2	512.289682	1022.56481	0.17383	8.9054E-05	0.21904	0.00011221	0.39287	0.00020126	512.2897288083803	73.656	0.53738	73.625	73.344	73.881	-0.030663					51	19	3	0	0	0	0.051692	1	18803	18803		52.268	16.141	1	396100			7520	796	4024	4024	9990	9990					0.05443207383189019
EPIHHRQERQN	11	Unmodified	_EPIHHRQERQN_					0	0	0			REV__L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|129|3|sense	REV__L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|129|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7692565917969	3	481.911512	1442.71271	0.11732	5.6536E-05	0.55687	0.00026836	0.67418	0.0003249	481.9117403390651	33.642	0.38933	33.708	33.549	33.939	0.066704					27	13	3	0	0	0	0.3331	1	6585	6585		2.2527	0.32522	1	144080	+		7521	22776	4025	4025	9991	9991					0.00905911689756067
EPIRWLLA	8	Unmodified	_EPIRWLLA_					0	0	0		ENSG00000174156|ENST00000211122|GSTA3	ENSG00000174156|ENST00000211122|GSTA3	ENSG00000174156|ENST00000211122|GSTA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.28759765625	2	499.295102	996.575651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.716	1	44.716	44.216	45.216	0								0	0	0	0.33625	1	9935	9935		20.871	6.0329	1				7522	6775	4026	4026	9992	9992					0.07722654548126684
EPISLVTALIW	11	Unmodified	_EPISLVTALIW_					0	0	0			REV__ENSG00000126353|ENST00000246657|CCR7	REV__ENSG00000126353|ENST00000246657|CCR7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.9667358398438	2	621.360639	1240.70673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.99	1	111.97	111.47	112.47	-0.015625								0	0	0	0.36137	1	29132	29132		5.7319	0	1		+		7523	15307	4027	4027	9993	9993					0.09600000405521314
EPISPIGLEE	10	Unmodified	_EPISPIGLEE_					0	0	0		nc|ENSG00000133863|Q9BXT5|TEX15;ENSG00000133863|ENST00000643185|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2935791015625	2	542.282054	1082.54956	0.60186	0.00032638	0.54628	0.00029624	1.1481	0.00062261	542.2823944912939	32.027	0.77868	32.068	31.89	32.669	0.040989					50	27	2	0	0	0	0.31039	1	6095	6095		18.146	0	1	256760			7524	3735	4028	4028	9994	9994					0.01158295795335107
EPKSLKMKRK	10	Unmodified	_EPKSLKMKRK_					0	0	0			REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF	REV__ENST00000446672.2_1_13:19955792-19968894:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8812866210938	2	622.879007	1243.74346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.816	1	41.913	41.413	42.413	0.096626								0	0	0	0.37807	1	9041	9041		2.9952	0.26005	1		+		7525	21083	4029	4029	9995	9995					0.13133973750427685
EPLEVHRH	8	Unmodified	_EPLEVHRH_					0	0	0		nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3	nc|ENSG00000138741|Q13507-3|TRPC3	nc|ENSG00000138741|Q13507-3|TRPC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7672119140625	2	508.76724	1015.51993	0.082673	4.2061E-05	-0.2539	-0.00012918	-0.17123	-8.7116E-05	508.76702461517414	17.236	1.0635	17.119	16.72	17.784	-0.11739					90	37	3	0	0	0	0.45942	1	1632	1632		2.5775	0.27475	1	437010			7526	4185	4030	4030	9996	9996					0.01278821360517668
EPLFWPIP	8	Unmodified	_EPLFWPIP_					0	0	0			REV__PPEF2|p.I533Tfs*3|1|0.04|ENSG00000156194|chr4:75872058-75872076|TTAGCTTGATACTGCACAA/-|frameshift_variant	REV__PPEF2|p.I533Tfs*3|1|0.04|ENSG00000156194|chr4:75872058-75872076|TTAGCTTGATACTGCACAA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2510681152344	2	499.770929	997.527304	0.30706	0.00015346	-0.36724	-0.00018354	-0.06018	-3.0076E-05	499.77049590666905	26.844	0.6778	26.823	26.564	27.242	-0.021412					57	23	3	0	0	0	0.3439	1	4606	4606		2.8892	0	1	344090	+		7527	16735	4031	4031	9997	9997					0.028441609082278774
EPLHPAAHSL	10	Unmodified	_EPLHPAAHSL_					0	0	0			REV__ENST00000440326.1_1_2:208104861-208110222:+|nuORF	REV__ENST00000440326.1_1_2:208104861-208110222:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.8602905273438	2	536.282723	1070.55089	0.60121	0.00032242	3.6097	0.0019358	4.2109	0.0022582	536.284820911655	54.289	0.29242	54.352	54.218	54.511	0.063202					14	10	2	0	0	0	0.27337	1	12884	12884		12.241	0	1	135350	+		7528	21042	4032	4032	9998	9998					0.01843974674761739
EPLLKYKELD	10	Unmodified	_EPLLKYKELD_					0	0	0			REV__nc|ENSG00000228716|P00374-2|DHFR	REV__nc|ENSG00000228716|P00374-2|DHFR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.5694274902344	3	416.567578	1246.6809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.07	1	103.06	102.56	103.56	-0.0011139								0	0	0	0.37664	1	27430	27430		1.7423	0.52744	1		+		7529	19127	4033	4033	9999	9999					0.0674310616323055
EPLPLCSS	8	Unmodified	_EPLPLCSS_					0	0	0			REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.7369689941406	2	423.207304	844.400055	0.30813	0.0001304	-3.0379	-0.0012857	-2.7298	-0.0011553	423.20592803959806	74.876	0.35428	74.845	74.755	75.109	-0.031479					15	12	2	0	0	0	0.34131	1	19253	19253		4.3292	2.0265	1	166050	+		7530	16962	4034	4034	10000	10000					-0.028369280282504405
EPLQAILI	8	Unmodified	_EPLQAILI_					0	0	0		CUL2|p.V577Efs*14|1|0.06|ENSG00000108094|chr10:35016349-35016350|-/TATT|frameshift_variant;CUL2|p.V577Mfs*18|1|0.06|ENSG00000108094|chr10:35016350-35016351|-/CAAAGAATTTAAGCAT|frameshift_variant;ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2	CUL2|p.V577Efs*14|1|0.06|ENSG00000108094|chr10:35016349-35016350|-/TATT|frameshift_variant	CUL2|p.V577Efs*14|1|0.06|ENSG00000108094|chr10:35016349-35016350|-/TATT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.2420654296875	2	448.776211	895.537869	0.38815	0.00017419	-2.5341	-0.0011372	-2.1459	-0.00096303	448.7761771767314	76.699	0.3884	76.668	76.346	76.734	-0.031487					20	13	2	0	0	0	0.34046	1	19715	19715		14.582	0	1	74744			7531	250	4035	4035	10001	10001					0.08592143562668753
EPLQAILI	8	Unmodified	_EPLQAILI_					0	0	0		CUL2|p.V577Efs*14|1|0.06|ENSG00000108094|chr10:35016349-35016350|-/TATT|frameshift_variant;CUL2|p.V577Mfs*18|1|0.06|ENSG00000108094|chr10:35016350-35016351|-/CAAAGAATTTAAGCAT|frameshift_variant;ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2	CUL2|p.V577Efs*14|1|0.06|ENSG00000108094|chr10:35016349-35016350|-/TATT|frameshift_variant	CUL2|p.V577Efs*14|1|0.06|ENSG00000108094|chr10:35016349-35016350|-/TATT|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	448.776211	895.537869	-0.0032964	-1.4793E-06	-1.929	-0.00086569	-1.9323	-0.00086717	448.7762307130608	76.72	0.43764	76.773	76.423	76.86	0.053413	0.052808	0.00013693	NaN	14.582	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55225			7532	250	4035	4035							0.08592143562668753
EPLQDWVVEK	10	Unmodified	_EPLQDWVVEK_					0	0	0			REV__ENST00000523561.1_1_8:99044328-99047937:+|nuORF	REV__ENST00000523561.1_1_8:99044328-99047937:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.9083251953125	3	414.883677	1241.6292	0.17583	7.295E-05	0.56029	0.00023246	0.73612	0.00030541	414.8839423118948	24.943	0.96146	24.887	24.404	25.365	-0.055931					74	33	3	0	0	0	0.31994	1	3817	3817		3.0723	3.0723	1	146720	+		7533	21933	4036	4036	10002	10002					0.0180536246932661
EPLQGKTLSF	10	Unmodified	_EPLQGKTLSF_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7477416992188	2	560.305864	1118.59717	0.43127	0.00024164	-1.4373	-0.00080535	-1.0061	-0.00056371	560.306132231384	86.526	0.90881	86.517	85.758	86.667	-0.0090027					55	34	2	0	0	0	0.31691	1	22550	22550		9.3831	2.66	1	100910			7534	7690	4037	4037	10003	10003					0.04261994786179457
EPLSIPSCIN	10	Unmodified	_EPLSIPSCIN_					0	0	0			REV__ENSG00000204923|ENST00000377957|FBXO48	REV__ENSG00000204923|ENST00000377957|FBXO48	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.7525634765625	2	536.7708	1071.52705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.132	1	54.195	53.695	54.695	0.063202								0	0	0	0.35421	1	12833	12833		13.042	1.4022	1		+		7535	18971	4038	4038	10004	10004					-0.005856268739080406
EPLSNEVGVPS	11	Unmodified	_EPLSNEVGVPS_					0	0	0			REV__ENST00000511915.1_1_12:112123944-112130701:+|nuORF	REV__ENST00000511915.1_1_12:112123944-112130701:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8162841796875	2	564.282586	1126.55062	0.43016	0.00024273	-4.3397	-0.0024488	-3.9096	-0.0022061	564.2794993571578	37.285	0.1663	37.373	37.275	37.442	0.08741					7	5	2	0	0	0	0.32477	1	7633	7633		16.149	0.90062	1	77021	+		7536	21796	4039	4039	10005	10005					-0.007594898357638158
EPLTPFLV	8	Unmodified	_EPLTPFLV_					0	0	0		ENST00000430640.1_1_9:16476096-16476201:+|nuORF	ENST00000430640.1_1_9:16476096-16476201:+|nuORF	ENST00000430640.1_1_9:16476096-16476201:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7880859375	2	458.262936	914.51132	0.28892	0.0001324	-0.10311	-4.7253E-05	0.18581	8.5149E-05	458.26272701905293	83.513	0.68439	83.59	83.214	83.898	0.077095					47	26	2	0	0	0	0.34131	1	21821	21821		4.3292	1.7518	1	313940			7537	10470	4040	4040	10006	10006					0.05064454671321528
EPLTPFLV	8	Unmodified	_EPLTPFLV_					0	0	0		ENST00000430640.1_1_9:16476096-16476201:+|nuORF	ENST00000430640.1_1_9:16476096-16476201:+|nuORF	ENST00000430640.1_1_9:16476096-16476201:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2628173828125	2	458.262936	914.51132	0.36671	0.00016805	-0.22296	-0.00010217	0.14375	6.5877E-05	458.2627486950638	83.643	0.7096	83.626	83.187	83.896	-0.016823					56	30	2	0	0	0	0.45015	1	21908	21908		5.7604	0	1	383910			7538	10470	4040	4040	10007	10007					0.05064454671321528
EPLVFKMFF	9	Unmodified	_EPLVFKMFF_					0	0	0		ENST00000552933.2_1_12:49412567-49412867:+|nuORF	ENST00000552933.2_1_12:49412567-49412867:+|nuORF	ENST00000552933.2_1_12:49412567-49412867:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3067626953125	2	579.306821	1156.59909	0.23558	0.00013647	-1.4626	-0.00084728	-1.227	-0.0007108	579.3059487719066	17.349	0.25973	17.349	17.217	17.477	0					15	9	2	0	0	0	0.34809	1	1619	1619		1.6526	0	1	32550			7539	11816	4041	4041	10008	10008					0.027053322704659877
EPMQKFMLI	9	2 Oxidation (M)	_EPM(Oxidation (M))QKFM(Oxidation (M))LI_		EPM(1)QKFM(1)LI		EPM(52)QKFM(52)LI	0	0	2		nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3;ENSG00000012983|ENST00000682126|MAP4K5;ENST00000554990.5_1_14:50886739-50915587:-|nuORF	nc|ENSG00000011566|Q8IVH8-3|MAP4K3;ENSG00000012983|ENST00000682126|MAP4K5	ENSG00000012983|ENST00000682126|MAP4K5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.791015625	2	584.790678	1167.5668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.456	1	50.456	49.956	50.956	0								0	0	0	0.078733	1	11703	11703		52.268	14.294	1				7540	458;447	4042	4042	10009	10009		47;48			-0.010278231948404937
EPMQKFMLI	9	2 Oxidation (M)	_EPM(Oxidation (M))QKFM(Oxidation (M))LI_		EPM(1)QKFM(1)LI		EPM(46)QKFM(46)LI	0	0	2		nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3;ENSG00000012983|ENST00000682126|MAP4K5;ENST00000554990.5_1_14:50886739-50915587:-|nuORF	nc|ENSG00000011566|Q8IVH8-3|MAP4K3;ENSG00000012983|ENST00000682126|MAP4K5	ENSG00000012983|ENST00000682126|MAP4K5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.791015625	2	584.790678	1167.5668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.414	1	50.459	49.959	50.959	0.044891								0	0	0	0.10131	1	11688	11688		46.021	8.047	1				7541	458;447	4042	4042	10010	10010		47;48			-0.010278231948404937
EPMQKFMLI	9	2 Oxidation (M)	_EPM(Oxidation (M))QKFM(Oxidation (M))LI_		EPM(1)QKFM(1)LI		EPM(42)QKFM(42)LI	0	0	2		nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3;ENSG00000012983|ENST00000682126|MAP4K5;ENST00000554990.5_1_14:50886739-50915587:-|nuORF	nc|ENSG00000011566|Q8IVH8-3|MAP4K3;ENSG00000012983|ENST00000682126|MAP4K5	ENSG00000012983|ENST00000682126|MAP4K5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.7910766601562	2	584.790678	1167.5668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.477	1	50.498	49.998	50.998	0.020691								0	0	0	0.11822	1	11700	11700		42.095	15.211	1				7542	458;447	4042	4042	10011	10011		47;48			-0.010278231948404937
EPNKWARV	8	Unmodified	_EPNKWARV_					0	0	0			REV__ENSG00000215115|ENST00000535490|CXorf49	REV__ENSG00000215115|ENST00000535490|CXorf49	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2591552734375	2	500.272158	998.529764	0.074392	3.7216E-05	-0.1942	-9.7153E-05	-0.11981	-5.9937E-05	500.27222553755223	15.038	0.53983	15.038	14.873	15.413	0					31	18	2	0	0	0	0.34198	1	889	889		10.824	1.4408	1	46055	+		7543	19074	4043	4043	10012	10012					0.03044009365896727
EPNRTSVLF	9	Unmodified	_EPNRTSVLF_					0	0	0			REV__ENST00000467423.1_1_1:19565574-19565811:-|nuORF	REV__ENST00000467423.1_1_1:19565574-19565811:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7826538085938	2	531.782556	1061.55056	0.29636	0.0001576	-0.90129	-0.00047929	-0.60493	-0.00032169	531.7819980583292	22.654	1.1078	22.61	21.977	23.084	-0.044867					96	38	3	0	0	0	0.25706	1	3229	3229		3.5965	0.60125	1	400620	+		7544	21297	4044	4044	10013	10013					0.022245549548870258
EPPHHPPP	8	Unmodified	_EPPHHPPP_					0	0	0			REV__ENST00000597145.5_1_19:4685559-4714096:-|nuORF	REV__ENST00000597145.5_1_19:4685559-4714096:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.7286071777344	2	454.224677	906.434801	0.1881	8.5439E-05	2.4805	0.0011267	2.6686	0.0012122	454.22566306402564	70.848	0.74534	70.908	70.299	71.044	0.060783					34	26	2	0	0	0	0.34046	1	17999	17999		14.582	14.582	1	184560	+		7545	22605	4045	4045	10014	10014					-0.022159241052918333
EPPHKVHI	8	Unmodified	_EPPHKVHI_					0	0	0			REV__nc|ENSG00000049323|Q14766-3|LTBP1	REV__nc|ENSG00000049323|Q14766-3|LTBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2926330566406	2	478.769252	955.52395	-0.1837	-8.7952E-05	-3.6569	-0.0017508	-3.8406	-0.0018387	478.7671494700487	12.25	0.18481	12.182	12.068	12.253	-0.06806					9	7	2	0	0	0	0.34319	1	63	63		5.7604	3.1829	1	32192	+		7546	13557	4046	4046	10015	10015					0.0444091085423679
EPPLLFLLEE	10	Unmodified	_EPPLLFLLEE_					0	0	0		ENSG00000176697|ENST00000356660|BDNF;nc|ENSG00000176697|P23560-2|BDNF;nc|ENSG00000176697|P23560-3|BDNF;nc|ENSG00000176697|P23560-5|BDNF;nc|ENSG00000176697|P23560-4|BDNF	ENSG00000176697|ENST00000356660|BDNF	ENSG00000176697|ENST00000356660|BDNF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.33544921875	2	600.331547	1198.64854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.95	1	86.034	85.534	86.534	0.084251								0	0	0	0.37664	1	22592	22592		3.5965	1.5367	1				7547	6941	4047	4047	10016	10016					0.05716318760278227
EPPLLFLLEE	10	Unmodified	_EPPLLFLLEE_					0	0	0		ENSG00000176697|ENST00000356660|BDNF;nc|ENSG00000176697|P23560-2|BDNF;nc|ENSG00000176697|P23560-3|BDNF;nc|ENSG00000176697|P23560-5|BDNF;nc|ENSG00000176697|P23560-4|BDNF	ENSG00000176697|ENST00000356660|BDNF	ENSG00000176697|ENST00000356660|BDNF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3341674804688	2	600.331547	1198.64854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.172	1	87.259	86.759	87.759	0.08709								0	0	0	0.37739	1	22967	22967		3.2813	1.4371	1				7548	6941	4047	4047	10017	10017					0.05716318760278227
EPPLSLTI	8	Unmodified	_EPPLSLTI_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.2524719238281	2	435.252569	868.490584	-0.048162	-2.0963E-05	-0.87145	-0.0003793	-0.91961	-0.00040026	435.2523286795179	70.789	2.4815	70.789	70.157	72.639	0					288	89	5	0	0	0	0.00085426	6	17969	17864;17881;17923;17969;18020;18324		146.01	31.064	1	9684400			7549	3421	4048	4048	10018;10019;10020;10021;10022;10023	10021					0.05107864291653641
EPPLSLTI	8	Unmodified	_EPPLSLTI_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2523498535156	2	435.252569	868.490584	0.0085562	3.7241E-06	-0.95196	-0.00041434	-0.94341	-0.00041062	435.2523014522076	70.842	4.4328	70.902	68.229	72.662	0.060783					310	160	3	0	0	0	0.00085426	4	17961	17867;17917;17961;18010		146.01	44.285	1	9492100			7550	3421	4048	4048	10024;10025;10026;10027	10026					0.05107864291653641
EPPLSLTI	8	Unmodified	_EPPLSLTI_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.25244140625	2	435.252569	868.490584	0.035693	1.5536E-05	-0.97161	-0.00042289	-0.93591	-0.00040736	435.2523013353534	70.83	3.8097	70.805	70.106	73.916	-0.024864					337	137	5	0	0	0	0.00085426	6	17945	17863;17898;17945;17997;18047;18209		146.01	44.285	1	9181200			7551	3421	4048	4048	10028;10029;10030;10031;10032;10033	10030					0.05107864291653641
EPPPVSTV	8	Unmodified	_EPPPVSTV_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2211608886719	2	413.221268	824.427984	0.28192	0.0001165	-0.097847	-4.0433E-05	0.18407	7.6063E-05	413.2211599252679	37.009	1.3905	37.009	36.616	38.007	0					85	49	3	0	0	0	0.19197	1	7596	7596		44.407	12.29	1	324790			7552	3953	4049	4049	10034	10034					0.008747182234856155
EPPPVSTV	8	Unmodified	_EPPPVSTV_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2212219238281	2	413.221268	824.427984	0.33207	0.00013722	-0.24175	-9.9898E-05	0.090315	3.732E-05	413.2210527697925	37.032	1.2173	37.119	36.656	37.873	0.08741					83	44	2	0	0	0	0.1971	1	7577	7577		50.855	6.448	1	407920			7553	3953	4049	4049	10035	10035					0.008747182234856155
EPPPVSTVV	9	Unmodified	_EPPPVSTVV_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.75665283203125	2	462.755475	923.496398	0.11799	5.4602E-05	1.1497	0.00053204	1.2677	0.00058664	462.75604739548606	48.955	1.0973	48.955	48.528	49.626	0					97	39	3	0	0	0	0.088391	1	11248	11248		39.957	11.47	1	970110			7554	3953	4050	4050	10036	10036					0.03158962803343002
EPPPVSTVV	9	Unmodified	_EPPPVSTVV_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.9379577636719	2	462.755475	923.496398	0.11018	5.0985E-05	1.0771	0.00049842	1.1873	0.00054941	462.75604103442794	48.874	1.1472	48.919	48.522	49.669	0.044891					73	41	2	0	0	0	0.14099	1	11194	11194		42.095	13.608	1	1058600			7555	3953	4050	4050	10037	10037					0.03158962803343002
EPPPVSTVV	9	Unmodified	_EPPPVSTVV_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.75640869140625	2	462.755475	923.496398	0.083735	3.8749E-05	1.2262	0.00056742	1.3099	0.00060617	462.7560495723364	48.84	1.079	48.872	48.549	49.628	0.032043					73	38	2	0	0	0	0.088391	1	11242	11242		39.957	3.9131	1	1043900			7556	3953	4050	4050	10038	10038					0.03158962803343002
EPPQVLEI	8	Unmodified	_EPPQVLEI_					0	0	0		nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.7555847167969	2	462.755475	923.496398	0.10881	5.0351E-05	-0.77966	-0.00036079	-0.67085	-0.00031044	462.7554111777032	62.926	1.0264	63.021	62.688	63.714	0.095722					88	36	4	0	0	0	0.11046	1	15520	15520		58.679	7.8238	1	968090			7557	1161	4051	4051	10039	10039					0.031589628033202644
EPPRGVLFD	9	Unmodified	_EPPRGVLFD_					0	0	0			REV__ENSG00000157353|ENST00000288078|FCSK	REV__ENSG00000157353|ENST00000288078|FCSK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.780029296875	2	515.271824	1028.5291	0.38304	0.00019737	-2.2483	-0.0011585	-1.8652	-0.00096109	515.2708316249061	40.648	0.34297	40.74	40.637	40.98	0.09267					15	12	2	0	0	0	0.22674	1	8707	8707		12.241	0	1	140280	+		7558	16780	4052	4052	10040	10040					0.01597169926208153
EPQAAPLVLRC	11	Unmodified	_EPQAAPLVLRC_					0	0	0			REV__ENST00000465149.1_1_2:220420747-220435459:-|nuORF	REV__ENST00000465149.1_1_2:220420747-220435459:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.3282470703125	2	598.82644	1195.63833	0.98277	0.00058851	0.7038	0.00042145	1.6866	0.00101	599.3289077038565	56.504	1.8774	56.485	55.349	57.227	-0.019077					238	68	5	0	0	0	0.21521	4	13476	13430;13476;13528;13579		29.841	6.0508	1	6939100	+		7559	15206	4053	4053	10041;10042;10043;10044	10042					0.048334325540054124
EPQEWVPI	8	Unmodified	_EPQEWVPI_					0	0	0		nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-4|BAG6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2289733886719	2	499.2531	996.491647	0.19134	9.5527E-05	0.26912	0.00013436	0.46046	0.00022989	499.2523808886346	69.592	0.47444	69.592	69.369	69.843	0					42	16	3	0	0	0	0.31617	1	17621	17621		26.884	1.4843	1	242420			7560	12909	4054	4054	10045	10045					-0.006739213394212129
EPQQCCPKC	9	Unmodified	_EPQQCCPKC_					0	0	0		nc|ENSG00000054938|Q6WN34-4|CHRDL2;ENSG00000054938|ENST00000376332|CHRDL2;nc|ENSG00000054938|Q6WN34-2|CHRDL2	nc|ENSG00000054938|Q6WN34-4|CHRDL2	nc|ENSG00000054938|Q6WN34-4|CHRDL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3174438476562	2	518.206455	1034.39836	0.55051	0.00028528	1.4142	0.00073286	1.9647	0.0010181	518.2069778526071	78.499	0.75615	78.557	78.283	79.039	0.058151					50	29	2	0	0	0	0.25622	1	20367	20367		7.2892	3.3448	1	180100			7561	695	4055	4055	10046	10046					-0.1174662838018321
EPRHGGLTL	9	Unmodified	_EPRHGGLTL_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.26934814453125	2	490.269616	978.524678	0.14221	6.972E-05	0.17831	8.7419E-05	0.32051	0.00015714	490.26972151415106	26.002	0.85077	25.963	25.813	26.664	-0.03867					47	29	2	0	0	0	0.20167	1	4224	4224		29.082	7.3349	1	369330			7562	810	4056	4056	10047	10047					0.03455705503279205
EPRHGGLTL	9	Unmodified	_EPRHGGLTL_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.26971435546875	2	490.269616	978.524678	0.30609	0.00015006	-0.24656	-0.00012088	0.059528	2.9185E-05	490.2696603771605	26.108	1.009	26.086	25.802	26.811	-0.022236					111	35	5	0	0	0	0.12642	1	4230	4230		34.402	9.0024	1	377430			7563	810	4056	4056	10048	10048					0.03455705503279205
EPRISYGNDAL	11	Unmodified	_EPRISYGNDAL_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.3189697265625	2	617.806759	1233.59897	0.37828	0.0002337	-0.27234	-0.00016825	0.10594	6.5448E-05	617.8066223751309	45.246	0.53496	45.314	45.093	45.628	0.068573					30	18	2	0	0	0	0.32526	1	10077	10077		16.566	7.9726	1	249030			7564	4430	4057	4057	10049	10049					-0.008489961958503045
EPRLSLLWLR	10	Unmodified	_EPRLSLLWLR_					0	0	0			REV__ENSG00000253831|ENST00000454449|ETV3L	REV__ENSG00000253831|ENST00000454449|ETV3L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8833618164062	2	641.885147	1281.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.62	1	101.62	101.12	102.12	0								0	0	0	0.38187	1	27091	27091		1.3295	0.25807	1		+		7565	19229	4058	4058	10050	10050					0.12613333485114708
EPRLSLLWLR	10	Unmodified	_EPRLSLLWLR_					0	0	0			REV__ENSG00000253831|ENST00000454449|ETV3L	REV__ENSG00000253831|ENST00000454449|ETV3L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8831787109375	2	641.885147	1281.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.9	1	101.9	101.4	102.4	0								0	0	0	0.37739	1	27157	27157		3.2813	1.4371	1		+		7566	19229	4058	4058	10051	10051					0.12613333485114708
EPRLSLLWLR	10	Unmodified	_EPRLSLLWLR_					0	0	0			REV__ENSG00000253831|ENST00000454449|ETV3L	REV__ENSG00000253831|ENST00000454449|ETV3L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.88232421875	2	641.885147	1281.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.91	1	99.904	99.404	100.4	-0.006897								0	0	0	0.37739	1	26747	26747		3.2813	0.28607	1		+		7567	19229	4058	4058	10052	10052					0.12613333485114708
EPRRAGAL	8	Unmodified	_EPRRAGAL_					0	0	0			REV__ENST00000455565.5_2_17:43714009-43714156:+|nuORF	REV__ENST00000455565.5_2_17:43714009-43714156:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.55877685546875	2	435.251226	868.487899	-0.20296	-8.8341E-05	-0.57643	-0.00025089	-0.7794	-0.00033923	435.2508335102787	16.388	0.39025	16.388	16.184	16.574	0					22	13	2	0	0	0	0.3439	1	1282	1282		2.8892	0	1	32315	+		7568	21162	4059	4059	10053	10053					0.048394536773685104
EPRSPPTLVLF	11	Unmodified	_EPRSPPTLVLF_					0	0	0			REV__ENST00000373840.8_1_9:123954490-123964046:-|nuORF	REV__ENST00000373840.8_1_9:123954490-123964046:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.5241394042969	3	419.239684	1254.69722	0.23534	9.8664E-05	-0.51113	-0.00021429	-0.27579	-0.00011562	419.5738511212698	39.008	0.83586	39.108	38.869	39.705	0.099403					48	29	4	0	0	0	0.33122	1	8212	8212		4.4062	0	1	334510	+		7569	20453	4060	4060	10054	10054					0.08006232119987544
EPRVADERPTP	11	Unmodified	_EPRVADERPTP_					0	0	0			REV__ENST00000520748.1_1_5:159707940-159739417:-|nuORF	REV__ENST00000520748.1_1_5:159707940-159739417:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.8245239257812	2	633.825483	1265.63641	0.1979	0.00012543	-0.3725	-0.0002361	-0.1746	-0.00011067	633.8252017333397	100.13	0.68082	100.17	99.768	100.45	0.038994					196	89	3	0	0	0	0.46655	1	26813	26813		2.4985	0	1	243740	+		7570	21889	4061	4061	10055	10055					0.014220950697335866
EPRVADERPTP	11	Unmodified	_EPRVADERPTP_					0	0	0			REV__ENST00000520748.1_1_5:159707940-159739417:-|nuORF	REV__ENST00000520748.1_1_5:159707940-159739417:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.825439453125	2	633.825483	1265.63641	0.44162	0.00027991	-0.44008	-0.00027894	0.001541	9.7675E-07	633.8250376359338	100.15	0.6472	100.15	99.867	100.51	-0.006897					217	88	3	0	0	0	0.46655	1	26885	26885		2.4985	0	1	327800	+		7571	21889	4061	4061	10056	10056					0.014220950697335866
EPRYALTTTL	10	Unmodified	_EPRYALTTTL_					0	0	0		nc|ENSG00000139637|Q9HB07|MYG1;ENSG00000139637|ENST00000267103|MYG1	nc|ENSG00000139637|Q9HB07|MYG1	nc|ENSG00000139637|Q9HB07|MYG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3505249023438	2	582.816596	1163.61864	0.67783	0.00039505	-0.34871	-0.00020324	0.32912	0.00019182	582.816277065783	50.491	0.49693	50.491	50.241	50.738	0					25	17	2	0	0	0	0.24727	1	11708	11708		38.615	13.624	1	282850			7572	4252	4062	4062	10057	10057					0.04337379814865017
EPSDNYPYFL	10	Unmodified	_EPSDNYPYFL_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.52056884765625	3	415.520516	1243.53972	0.56626	0.00023529	-0.98021	-0.0004073	-0.41394	-0.000172	415.5202073015421	50.055	0.93859	50.076	49.802	50.74	0.020691					89	34	4	0	0	0	0.37007	1	11611	11611		8.9762	1.4992	1	1292500	+		7573	23129	4063	4063	10058	10058					-0.07230892210054662
EPSLYRRV	8	Unmodified	_EPSLYRRV_					0	0	0			REV__ENST00000588420.1_1_19:46144897-46145107:-|nuORF	REV__ENST00000588420.1_1_19:46144897-46145107:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.79931640625	2	510.285266	1018.55598	0.54759	0.00027943	0.3563	0.00018181	0.90389	0.00046124	510.2852716123729	34.123	0.33685	34.123	33.94	34.277	0					14	11	2	0	0	0	0.34294	1	6643	6643		7.2892	1.0834	1	95495	+		7574	22544	4064	4064	10059	10059					0.047442785373846164
EPSWALIL	8	Unmodified	_EPSWALIL_					0	0	0			REV__ENST00000592905.5_1_19:45918043-45926632:-|nuORF	REV__ENST00000592905.5_1_19:45918043-45926632:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.76043701171875	2	464.760561	927.506569	0.38725	0.00017998	0.38258	0.00017781	0.76983	0.00035779	464.76089859106645	74.64	0.81506	74.609	74.295	75.11	-0.030945					43	28	2	0	0	0	0.42758	1	19181	19181		13.508	0	1	604120	+		7575	13437	4065	4065	10060	10060					0.03991570528569355
EPTAFAYVEPA	11	Unmodified	_EPTAFAYVEPA_					0	0	0			REV__ENST00000521393.1_1_14:106188133-106188816:-|nuORF	REV__ENST00000521393.1_1_14:106188133-106188816:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.7881469726562	2	597.787504	1193.56045	0.17103	0.00010224	1.3692	0.00081847	1.5402	0.0009207	597.7881814825867	65.128	0.6929	65.128	64.884	65.577	0					58	24	4	0	0	0	0.39234	1	16276	16276		12.241	4.3305	1	1070100	+		7576	21900	4066	4066	10061	10061					-0.02858301830383425
EPTAFAYVEPA	11	Unmodified	_EPTAFAYVEPA_					0	0	0			REV__ENST00000521393.1_1_14:106188133-106188816:-|nuORF	REV__ENST00000521393.1_1_14:106188133-106188816:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.7879028320312	2	597.787504	1193.56045	0.24239	0.0001449	1.1462	0.00068519	1.3886	0.00083009	597.7881347808292	65.048	0.64315	65.137	64.876	65.519	0.088882					62	23	4	0	0	0	0.39234	1	16222	16222		12.241	2.8575	1	1065100	+		7577	21900	4066	4066	10062	10062					-0.02858301830383425
EPTEVDNIEY	10	Unmodified	_EPTEVDNIEY_					0	0	0			REV__nc|ENSG00000164506|Q5T5C0-3|STXBP5	REV__nc|ENSG00000164506|Q5T5C0-3|STXBP5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.758544921875	2	604.769508	1207.52446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.109	1	40.202	39.702	40.702	0.09267								0	0	0	0.34209	1	8524	8524		18.146	1.0335	1		+		7578	17163	4067	4067	10063	10063					-0.0709980379785975
EPTFSLTPGF	10	Unmodified	_EPTFSLTPGF_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.30810546875	2	548.27149	1094.52843	0.55114	0.00030218	-2.4433	-0.0013396	-1.8922	-0.0010374	548.770941335443	82.496	0.44255	82.496	82.313	82.756	0					24	16	2	0	0	0	0.31267	1	21593	21593		14.838	0.93222	1	146550			7579	7225	4068	4068	10064	10064					-0.015056695135172049
EPTSKGTPR	9	Unmodified	_EPTSKGTPR_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.28729248046875	2	486.759081	971.503609	-0.12653	-6.159E-05	1.1864	0.0005775	1.0599	0.00051591	486.75959892004835	12.863	0.20733	12.795	12.671	12.878	-0.067496					12	6	3	0	0	0	0.26168	1	233	233		1.8442	0	1	33468			7580	1722	4069	4069	10065	10065					0.0167169540377472
EPVDLQKK	8	Unmodified	_EPVDLQKK_					0	0	0		ENSG00000163848|ENST00000360647|ZNF148;ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ZNF148|p.Q640Sfs*7|1|0.36|ENSG00000163848|chr3:125232809-125232809|A/-|frameshift_variant	ENSG00000163848|ENST00000360647|ZNF148	ENSG00000163848|ENST00000360647|ZNF148	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.264892578125	2	478.7742	955.533846	-0.057562	-2.7559E-05	0.079758	3.8186E-05	0.022195	1.0627E-05	478.77426106904187	14.354	0.38457	14.25	14.131	14.516	-0.10466					14	12	2	0	0	0	0.34353	1	669	669		4.756	0	1	17961			7581	5744	4070	4070	10066	10066					0.054300540689382615
EPVESPVV	8	Unmodified	_EPVESPVV_					0	0	0			REV__ENST00000360655.8_2_11:19372274-19372361:+|nuORF	REV__ENST00000360655.8_2_11:19372274-19372361:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.22650146484375	2	428.226551	854.438549	-0.084742	-3.6289E-05	0.53541	0.00022928	0.45067	0.00019299	428.2267613853088	61.098	1.6358	61.098	60.577	62.213	0					121	60	4	0	0	0	0.2157	2	15018	15018;15071		40.449	5.2349	1	7408900	+		7582	20263	4071	4071	10067;10068	10067					0.005507008779090938
EPVESPVV	8	Unmodified	_EPVESPVV_					0	0	0			REV__ENST00000360655.8_2_11:19372274-19372361:+|nuORF	REV__ENST00000360655.8_2_11:19372274-19372361:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2264404296875	2	428.226551	854.438549	-0.086583	-3.7077E-05	0.49021	0.00020992	0.40363	0.00017284	428.226733943482	61.045	1.5702	61.142	60.579	62.149	0.096985					107	56	3	0	0	0	0.35375	1	15041	15041		24.674	0	1	7360000	+		7583	20263	4071	4071	10069	10069					0.005507008779090938
EPVGLQPIR	9	Unmodified	_EPVGLQPIR_					0	0	0		nc|ENSG00000127328|Q96QF0-3|RAB3IP;nc|ENSG00000127328|Q96QF0-4|RAB3IP;ENSG00000127328|ENST00000247833|RAB3IP;nc|ENSG00000127328|Q96QF0|RAB3IP;nc|ENSG00000127328|Q96QF0-8|RAB3IP	nc|ENSG00000127328|Q96QF0-3|RAB3IP	nc|ENSG00000127328|Q96QF0-3|RAB3IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.3351745605469	2	504.795466	1007.57638	0.12205	6.1612E-05	0.96706	0.00048817	1.0891	0.00054978	504.7957630810835	24.577	0.16788	24.546	24.485	24.653	-0.031408					6	5	2	0	0	0	0.2322	1	3812	3812		14.838	2.3067	1	17121			7584	3312	4072	4072	10070	10070					0.07289449197173781
EPVGVGAIEEI	11	Unmodified	_EPVGVGAIEEI_					0	0	0			REV__nc|ENSG00000144554|Q9BXW9-3|FANCD2	REV__nc|ENSG00000144554|Q9BXW9-3|FANCD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.27099609375	2	556.795329	1111.5761	0.038714	2.1556E-05	0.92685	0.00051607	0.96557	0.00053762	556.7958195629195	29.62	0.64477	29.633	29.329	29.974	0.013474					38	21	3	0	0	0	0.33037	1	5381	5381		7.609	3.2797	1	261910	+		7585	16241	4073	4073	10071	10071					0.024779846866749722
EPVLYISQL	9	Unmodified	_EPVLYISQL_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.81689453125	2	531.297507	1060.58046	0.40961	0.00021762	0.076609	4.0702E-05	0.48622	0.00025833	531.2971880683037	76.392	1.3012	76.392	75.903	77.204	0					95	47	3	0	0	0	0.11461	1	19593	19593		36.127	1.7253	1	1246300	+		7586	17138	4074	4074	10072	10072					0.05259493900257439
EPVLYISQL	9	Unmodified	_EPVLYISQL_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8169555664062	2	531.297507	1060.58046	0.57865	0.00030743	-0.057941	-3.0784E-05	0.52071	0.00027665	531.2970887019138	76.421	1.3322	76.39	75.881	77.213	-0.031479					84	48	2	0	0	0	0.088443	3	19634	19587;19634;19828		39.95	10.728	1	1399400	+		7587	17138	4074	4074	10073;10074;10075	10074					0.05259493900257439
EPVMEEFMFI	10	Unmodified	_EPVMEEFMFI_					0	0	0			REV__ENST00000464491.5_1_2:172180836-172182590:-|nuORF	REV__ENST00000464491.5_1_2:172180836-172182590:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.8934631347656	3	424.527737	1270.56138	-0.12563	-5.3332E-05	-0.27309	-0.00011594	-0.39872	-0.00016927	424.5274858345807	19.642	0.60922	19.526	19.26	19.869	-0.11592					51	20	3	0	0	0	0.3213	1	2325	2325		1.9064	0.83491	1	182160	+		7588	21264	4075	4075	10076	10076					-0.06307546777338757
EPVMETSCQ	9	Unmodified	_EPVMETSCQ_					0	0	0			REV__ENST00000395527.8_1_17:20160896-20200278:+|nuORF	REV__ENST00000395527.8_1_17:20160896-20200278:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.811279296875	2	512.209718	1022.40488	0.08832	4.5238E-05	1.2175	0.00062359	1.3058	0.00066883	512.2098884688595	30.875	0.38704	30.902	30.669	31.056	0.027159					27	13	3	0	0	0	0.25706	1	5717	5717		3.5965	0	1	83650	+		7589	20637	4076	4076	10077	10077					-0.10542411947801611
EPVQAAIWQAL	11	Unmodified	_EPVQAAIWQAL_					0	0	0		ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000525495.6_2_17:45219385-45266538:-|nuORF;ENST00000528147.1_1_17:45258889-45266538:-|nuORF	ENSG00000004897|ENST00000066544|CDC27	ENSG00000004897|ENST00000066544|CDC27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.2239990234375	3	409.224034	1224.65027	0.28788	0.00011781	-0.018973	-7.7641E-06	0.26891	0.00011004	409.2239839035534	47.771	1.139	47.814	47.504	48.643	0.04332					118	42	4	0	0	0	0.3826	1	10927	10927		13.519	1.3439	1	11178000			7590	319	4077	4077	10078	10078					0.04693372568840459
EPVRSNDRRGG	11	Unmodified	_EPVRSNDRRGG_					0	0	0			REV__ENST00000328914.4_1_7:4810261-4810330:+|nuORF	REV__ENST00000328914.4_1_7:4810261-4810330:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.55926513671875	3	414.881441	1241.62249	-0.36402	-0.00015102	1.8281	0.00075843	1.464	0.0006074	414.8823961180047	13.349	0.39662	13.349	13.2	13.597	0					32	13	4	0	0	0	0.33282	1	429	429		1.0136	0.088041	1	171760	+		7591	20021	4078	4078	10079	10079					0.011348623613002928
EPWAMRAL	8	Unmodified	_EPWAMRAL_					0	0	0		nc|ENSG00000179362|Q86SG4|HMGN2P46	nc|ENSG00000179362|Q86SG4|HMGN2P46	nc|ENSG00000179362|Q86SG4|HMGN2P46	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7773132324219	2	487.249837	972.485122	0.25002	0.00012182	1.9733	0.0009615	2.2234	0.0010833	487.2509000819097	19.61	0.32431	19.494	19.405	19.729	-0.11592					15	10	2	0	0	0	0.34313	1	2280	2280		6.7232	0	1	29985			7592	12863	4079	4079	10080	10080					-0.0022213777180013494
EPYFLISSG	9	Unmodified	_EPYFLISSG_					0	0	0		ENST00000354618.9_1_1:36770211-36770466:+|nuORF	ENST00000354618.9_1_1:36770211-36770466:+|nuORF	ENST00000354618.9_1_1:36770211-36770466:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7542724609375	2	506.752933	1011.49131	0.2929	0.00014843	1.2231	0.00061979	1.516	0.00076822	506.7534430295958	70.936	0.46634	70.997	70.744	71.21	0.060783					35	16	3	0	0	0	0.24311	1	17996	17996		16.942	1.0951	1	405980			7593	9597	4080	4080	10081	10081					-0.013973410592711843
EPYFNFTSI	9	Unmodified	_EPYFNFTSI_					0	0	0		nc|ENSG00000075089|Q9GZN1-2|ACTR6;ENSG00000075089|ENST00000188312|ACTR6	nc|ENSG00000075089|Q9GZN1-2|ACTR6	nc|ENSG00000075089|Q9GZN1-2|ACTR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2640380859375	2	559.263665	1116.51278	0.27428	0.00015339	0.59147	0.00033079	0.86575	0.00048418	559.2639232925286	80.449	0.95795	80.449	80.15	81.108	0					109	41	5	0	0	0	0.0028542	2	20922	20876;20922		103.42	67.292	1	1635300			7594	1037	4081	4081	10082;10083	10083					-0.040819560305635605
EPYFNFTSI	9	Unmodified	_EPYFNFTSI_					0	0	0		nc|ENSG00000075089|Q9GZN1-2|ACTR6;ENSG00000075089|ENST00000188312|ACTR6	nc|ENSG00000075089|Q9GZN1-2|ACTR6	nc|ENSG00000075089|Q9GZN1-2|ACTR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.263916015625	2	559.263665	1116.51278	0.22574	0.00012625	0.88388	0.00049432	1.1096	0.00062057	559.2640146485077	80.38	0.94278	80.445	80.131	81.074	0.065094					86	37	3	0	0	0	0.0028542	2	20885	20842;20885		103.42	61.58	1	1620800			7595	1037	4081	4081	10084;10085	10085					-0.040819560305635605
EPYFNFTSI	9	Unmodified	_EPYFNFTSI_					0	0	0		nc|ENSG00000075089|Q9GZN1-2|ACTR6;ENSG00000075089|ENST00000188312|ACTR6	nc|ENSG00000075089|Q9GZN1-2|ACTR6	nc|ENSG00000075089|Q9GZN1-2|ACTR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2634887695312	2	559.263665	1116.51278	0.26033	0.00014559	0.40687	0.00022755	0.6672	0.00037314	559.2637470965763	80.573	1.0049	80.546	80.173	81.178	-0.026825					84	38	3	0	0	0	0.0010968	3	20918	20870;20918;20970		121.53	69.266	1	1812800			7596	1037	4081	4081	10086;10087;10088	10087					-0.040819560305635605
EPYKTAVI	8	Unmodified	_EPYKTAVI_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.K640Ifs*22|1|0.06|ENSG00000139687|chr13:48456307-48456308|-/TACATCTTGTCTATTTAATTGGTATTAT|frameshift_variant	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.27166748046875	2	460.758018	919.501483	0.15274	7.0378E-05	0.47269	0.0002178	0.62543	0.00028817	460.7583892115396	35.97	0.92513	35.97	35.719	36.644	0					77	33	3	0	0	0	0.33993	1	7234	7234		11.64	3.047	1	1040000			7597	4258	4082	4082	10089	10089					0.038512666659471506
EPYKTAVI	8	Unmodified	_EPYKTAVI_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.K640Ifs*22|1|0.06|ENSG00000139687|chr13:48456307-48456308|-/TACATCTTGTCTATTTAATTGGTATTAT|frameshift_variant	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.7582702636719	2	460.758018	919.501483	0.19977	9.2045E-05	0.34893	0.00016077	0.5487	0.00025282	460.7583181844563	35.868	0.85122	35.95	35.71	36.561	0.082355					72	30	3	0	0	0	0.33993	1	7234	7234		11.64	5.8799	1	1256500			7598	4258	4082	4082	10090	10090					0.038512666659471506
EPYKTAVI	8	Unmodified	_EPYKTAVI_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.K640Ifs*22|1|0.06|ENSG00000139687|chr13:48456307-48456308|-/TACATCTTGTCTATTTAATTGGTATTAT|frameshift_variant	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.7582092285156	2	460.758018	919.501483	0.33029	0.00015218	0.61623	0.00028393	0.94652	0.00043611	460.7582760149787	35.859	0.98158	35.945	35.645	36.626	0.08625					70	34	3	0	0	0	0.34167	1	7228	7228		11.64	5.8799	1	1252300			7599	4258	4082	4082	10091	10091					0.038512666659471506
EPYKVYRI	8	Unmodified	_EPYKVYRI_					0	0	0		ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2974853515625	2	534.297842	1066.58113	-0.2942	-0.00015719	1.0438	0.00055771	0.74962	0.00040052	534.7998938546959	35.198	0.63078	35.198	34.917	35.547	0					65	22	4	0	0	0	0.22	1	7012	7012		39.957	20.518	1	878820			7600	4346	4083	4083	10092	10092					0.05050333339931967
EPYKVYRI	8	Unmodified	_EPYKVYRI_					0	0	0		ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2975463867188	2	534.297842	1066.58113	-0.35024	-0.00018713	1.5275	0.00081614	1.1773	0.00062901	534.2976904417706	35.205	0.83073	35.281	34.933	35.764	0.075306					78	29	4	0	0	0	0.28696	1	6988	6988		32.305	15.363	1	952530			7601	4346	4083	4083	10093	10093					0.05050333339931967
EPYKVYRI	8	Unmodified	_EPYKVYRI_					0	0	0		ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	ENSG00000140968|ENST00000268638|IRF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2975463867188	2	534.297842	1066.58113	-0.37753	-0.00020171	1.7705	0.00094599	1.393	0.00074428	534.2977344569703	35.178	1.0568	35.255	34.893	35.949	0.077377					88	37	4	0	0	0	0.28696	2	6967	6967;7018		32.305	15.363	1	875940			7602	4346	4083	4083	10094;10095	10094					0.05050333339931967
EPYLKSFY	8	Unmodified	_EPYLKSFY_					0	0	0		AP3B1|p.K923Nfs*4|1|0.36|ENSG00000132842|chr5:78039083-78039083|T/-|frameshift_variant;nc|ENSG00000132842|O00203-3|AP3B1;ENSG00000132842|ENST00000255194|AP3B1;ENST00000543938.5_1_15:83328314-83349061:-|nuORF;nc|ENSG00000103723|Q13367-3|AP3B2;nc|ENSG00000103723|Q13367|AP3B2;ENSG00000103723|ENST00000535359|AP3B2	AP3B1|p.K923Nfs*4|1|0.36|ENSG00000132842|chr5:78039083-78039083|T/-|frameshift_variant;ENST00000543938.5_1_15:83328314-83349061:-|nuORF	ENST00000543938.5_1_15:83328314-83349061:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3038940429688	2	523.7633	1045.51205	0.67123	0.00035157	0.21669	0.0001135	0.88793	0.00046506	523.7638306054905	79.224	0.38609	79.224	78.929	79.315	0					28	16	2	0	0	0	0.34039	1	20520	20520		10.824	0	1	148780			7603	48;1850	4084	4084	10096	10096					-0.008887506796099842
EPYLSSREI	9	Unmodified	_EPYLSSREI_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.2802734375	2	547.279846	1092.54514	0.62156	0.00034017	0.92749	0.0005076	1.5491	0.00084777	547.2798301641003	41.795	0.76685	41.885	41.725	42.492	0.090252					65	29	3	0	0	0	0.048637	1	9027	9027		53.404	22.767	1	4475000			7604	2631	4085	4085	10097	10097					0.002568313724395921
EPYLSSREI	9	Unmodified	_EPYLSSREI_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.281005859375	2	547.279846	1092.54514	0.8137	0.00044532	0.0157	8.5921E-06	0.8294	0.00045392	547.2798201117938	41.808	0.65966	41.905	41.7	42.36	0.096622					46	24	2	0	0	0	0.048637	1	9012	9012		53.404	22.767	1	4528900			7605	2631	4085	4085	10098	10098					0.002568313724395921
EPYNAVLSI	9	Unmodified	_EPYNAVLSI_					0	0	0		ENSG00000101162|ENST00000217133|TUBB1	ENSG00000101162|ENST00000217133|TUBB1	ENSG00000101162|ENST00000217133|TUBB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.2659912109375	2	503.266207	1004.51786	0.33222	0.00016719	-0.29003	-0.00014596	0.042186	2.1231E-05	503.26596880529655	68.054	0.62254	68.054	67.732	68.355	0					49	22	3	0	0	0	0.012386	1	17099	17099		75.761	25.828	1	1172800			7606	1670	4086	4086	10099	10099					0.01578347832048621
EPYNAVLSI	9	Unmodified	_EPYNAVLSI_					0	0	0		ENSG00000101162|ENST00000217133|TUBB1	ENSG00000101162|ENST00000217133|TUBB1	ENSG00000101162|ENST00000217133|TUBB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.265869140625	2	503.266207	1004.51786	0.41484	0.00020878	-0.44067	-0.00022178	-0.025832	-1.3001E-05	503.2659298373026	67.912	0.67498	67.99	67.715	68.39	0.078041					56	23	3	0	0	0	0.023967	1	17100	17100		62.573	5.1013	1	1165700			7607	1670	4086	4086	10100	10100					0.01578347832048621
EPYNAVLSI	9	Unmodified	_EPYNAVLSI_					0	0	0		ENSG00000101162|ENST00000217133|TUBB1	ENSG00000101162|ENST00000217133|TUBB1	ENSG00000101162|ENST00000217133|TUBB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.26593017578125	2	503.266207	1004.51786	0.34743	0.00017485	-0.19881	-0.00010006	0.14862	7.4794E-05	503.2659276114525	68.024	0.72726	68.007	67.672	68.399	-0.016296					67	25	4	0	0	0	0.012386	1	17118	17118		75.761	18.289	1	1189600			7608	1670	4086	4086	10101	10101					0.01578347832048621
EPYPYPIPTV	10	Unmodified	_EPYPYPIPTV_					0	0	0		ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3026123046875	2	588.30279	1174.59103	0.25241	0.00014849	-0.50188	-0.00029526	-0.24947	-0.00014676	588.3024007658462	73.396	0.83365	73.396	72.961	73.795	0					77	29	3	0	0	0	0.051528	3	18787	18745;18787;18798		58.679	33.688	1	830510			7609	4497	4087	4087	10102;10103;10104	10103					0.01071476554648143
EPYPYPIPTV	10	Unmodified	_EPYPYPIPTV_					0	0	0		ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.3027954101562	2	588.30279	1174.59103	0.20267	0.00011923	-0.44785	-0.00026347	-0.24518	-0.00014424	588.3023931728859	73.389	0.91463	73.442	72.981	73.895	0.053841					76	32	3	0	0	0	0.023345	3	18748	18719;18748;18769		68.081	45.344	1	866830			7610	4497	4087	4087	10105;10106;10107	10106					0.01071476554648143
EPYPYPIPTV	10	Unmodified	_EPYPYPIPTV_					0	0	0		ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3182373046875	2	588.30279	1174.59103	0.37945	0.00022323	-0.59881	-0.00035228	-0.21936	-0.00012905	588.3022888752323	73.4	0.81788	73.37	72.98	73.798	-0.029305					75	29	3	0	0	0	0.15638	1	18791	18791		37.974	15.238	1	875330			7611	4497	4087	4087	10108	10108					0.01071476554648143
EQDGRVHLT	9	Unmodified	_EQDGRVHLT_					0	0	0		nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1;ENST00000397998.7_1_8:19263293-19315147:-|nuORF;ENSG00000147408|ENST00000692225|CSGALNACT1	nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.301513671875	2	527.767437	1053.52032	0.42704	0.00022538	0.43044	0.00022717	0.85748	0.00045255	527.7672078059994	22.072	0.45752	22.072	21.845	22.303	0					27	16	2	0	0	0	0.24848	1	3032	3032		13.906	5.9959	1	157870			7612	4762	4088	4088	10109	10109					-0.004298037102898888
EQDGRVHLT	9	Unmodified	_EQDGRVHLT_					0	0	0		nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1;ENST00000397998.7_1_8:19263293-19315147:-|nuORF;ENSG00000147408|ENST00000692225|CSGALNACT1	nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.301513671875	2	527.767437	1053.52032	0.40858	0.00021564	0.83094	0.00043854	1.2395	0.00065418	527.7672938263073	22.11	0.60109	22.01	21.682	22.284	-0.10034					29	21	2	0	0	0	0.24848	1	3007	3007		13.906	2.2658	1	173590			7613	4762	4088	4088	10110	10110					-0.004298037102898888
EQDGRVHLT	9	Unmodified	_EQDGRVHLT_					0	0	0		nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1;ENST00000397998.7_1_8:19263293-19315147:-|nuORF;ENSG00000147408|ENST00000692225|CSGALNACT1	nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3014526367188	2	527.767437	1053.52032	0.3517	0.00018562	0.89385	0.00047175	1.2456	0.00065736	527.7672869003064	22.041	0.53902	21.992	21.804	22.343	-0.049377					33	19	3	0	0	0	0.24848	1	2985	2985		13.906	3.1065	1	186160			7614	4762	4088	4088	10111	10111					-0.004298037102898888
EQDVDKTLK	9	Unmodified	_EQDVDKTLK_					0	0	0			REV__nc|ENSG00000184305|Q9C0I3-2|CCSER1	REV__nc|ENSG00000184305|Q9C0I3-2|CCSER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8009033203125	2	538.285128	1074.5557	0.29308	0.00015776	1.4198	0.00076426	1.7129	0.00092203	538.28577548887	15.716	0.40663	15.651	15.457	15.864	-0.064413					22	13	3	0	0	0	0.26068	1	1171	1171		3.2813	0.28607	1	37633	+		7615	18309	4089	4089	10112	10112					0.021408140268476927
EQDVDKTLK	9	Unmodified	_EQDVDKTLK_					0	0	0			REV__nc|ENSG00000184305|Q9C0I3-2|CCSER1	REV__nc|ENSG00000184305|Q9C0I3-2|CCSER1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	538.285128	1074.5557	0.25611	0.00013786	1.5399	0.0008289	1.796	0.00096676	538.2859798705979	15.71	0.28812	15.71	15.528	15.816	0	0.024441	0.00036613	NaN	3.2813	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32474	+		7616	18309	4089	4089							0.021408140268476927
EQDWHGWQ	8	Unmodified	_EQDWHGWQ_					0	0	0		ENST00000541162.1_1_12:11710149-11743186:+|nuORF;ENST00000499291.6_1_12:11710149-11716643:+|nuORF	ENST00000541162.1_1_12:11710149-11743186:+|nuORF	ENST00000541162.1_1_12:11710149-11743186:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.811279296875	2	543.225405	1084.43626	0.27831	0.00015119	3.7654	0.0020454	4.0437	0.0021966	543.2271099891367	14.678	0.22715	14.574	14.454	14.681	-0.10466					13	7	2	0	0	0	0.34367	1	815	815		4.3292	0.73274	1	32341			7617	11260	4090	4090	10113	10113					-0.10258334807213032
EQEERERLR	9	Unmodified	_EQEERERLR_					0	0	0		ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.519775390625	3	415.54958	1243.62691	0.13544	5.6281E-05	-2.0062	-0.00083366	-1.8707	-0.00077737	415.5486476024105	29.299	0.98989	29.299	28.76	29.75	0					68	35	2	0	0	0	0.25049	1	5186	5186		9.544	0.56773	1	225960			7618	7896	4091	4091	10114	10114					0.014843267842252317
EQELIYFTF	9	Unmodified	_EQELIYFTF_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.2926635742188	2	595.292422	1188.57029	0.5359	0.00031902	0.22352	0.00013306	0.75942	0.00045208	595.2925061760957	89.842	0.60815	89.842	89.645	90.253	0					123	51	3	0	0	0	0.1558	1	23789	23789		41.956	41.956	1	287790			7619	3956	4092	4092	10115	10115					-0.016451138250204167
EQELIYFTF	9	Unmodified	_EQELIYFTF_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.29248046875	2	595.292422	1188.57029	0.54475	0.00032429	0.23723	0.00014122	0.78199	0.00046551	595.2925080933095	89.709	0.63438	89.799	89.576	90.21	0.090569					116	51	3	0	0	0	0.099099	1	23752	23752		55.503	55.503	1	415370			7620	3956	4092	4092	10116	10116					-0.016451138250204167
EQELIYFTF	9	Unmodified	_EQELIYFTF_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.2928466796875	2	595.292422	1188.57029	0.52207	0.00031078	0.21688	0.00012911	0.73894	0.00043989	595.2925533667338	89.817	0.60859	89.816	89.628	90.237	-0.00081635					143	54	4	0	0	0	0.04299	1	23778	23778		55.503	55.503	1	497610			7621	3956	4092	4092	10117	10117					-0.016451138250204167
EQELPNFLVV	10	Unmodified	_EQELPNFLVV_					0	0	0			REV__nc|ENSG00000196547|P49641-2|MAN2A2	REV__nc|ENSG00000196547|P49641-2|MAN2A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.3348388671875	2	594.318971	1186.62339	0.44393	0.00026384	0.3431	0.00020391	0.78703	0.00046775	594.3190770114304	24.204	0.82056	24.131	23.791	24.612	-0.072559					55	27	3	0	0	0	0.38773	1	3777	3777		5.7319	0.97584	1	152680	+		7622	18660	4093	4093	10118	10118					0.03754263957648618
EQEQQELS	8	Unmodified	_EQEQQELS_					0	0	0			REV__ENSG00000160867|ENST00000292408|FGFR4	REV__ENSG00000160867|ENST00000292408|FGFR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7721252441406	2	495.722361	989.430169	0.23904	0.0001185	1.1117	0.0005511	1.3508	0.0006696	495.7229010457475	39.291	0.64418	39.383	39.105	39.75	0.09267					37	22	2	0	0	0	0.33245	1	8215	8215		19.439	0	1	354010	+		7623	16920	4094	4094	10119	10119					-0.06496897829356385
EQEQQELS	8	Unmodified	_EQEQQELS_					0	0	0			REV__ENSG00000160867|ENST00000292408|FGFR4	REV__ENSG00000160867|ENST00000292408|FGFR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7721252441406	2	495.722361	989.430169	0.42814	0.00021224	0.97117	0.00048143	1.3993	0.00069367	495.72285090069016	39.242	0.60168	39.342	39.074	39.676	0.099407					39	21	2	0	0	0	0.33245	1	8191	8191		19.439	0	1	396090	+		7624	16920	4094	4094	10120	10120					-0.06496897829356385
EQFLLPVI	8	Unmodified	_EQFLLPVI_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7840270996094	2	479.784036	957.553519	0.29021	0.00013924	0.385	0.00018472	0.67521	0.00032395	479.7839791900532	89.135	0.86704	89.135	88.844	89.711	0					99	46	4	0	0	0	0.11736	1	23577	23577		57.471	9.1255	1	1465900			7625	7094	4095	4095	10121	10121					0.07304430079705071
EQFLLPVI	8	Unmodified	_EQFLLPVI_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7842102050781	2	479.784036	957.553519	0.32019	0.00015362	0.42116	0.00020207	0.74135	0.00035569	479.7839907932382	88.989	0.78772	89.08	88.809	89.596	0.090569					99	39	4	0	0	0	0.11736	2	23580	23535;23580		57.471	9.1255	1	1213900			7626	7094	4095	4095	10122;10123	10123					0.07304430079705071
EQFLLPVI	8	Unmodified	_EQFLLPVI_					0	0	0		ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000179010|ENST00000382581|MRFAP1	ENSG00000179010|ENST00000382581|MRFAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7840576171875	2	479.784036	957.553519	0.35602	0.00017081	0.27076	0.00012991	0.62678	0.00030072	479.7839487147861	89.113	0.94425	89.113	88.78	89.724	-0.00080872					100	52	3	0	0	0	0.11736	3	23559	23515;23559;23601		57.471	9.1255	1	1620200			7627	7094	4095	4095	10124;10125;10126	10125					0.07304430079705071
EQIAFVEKF	9	Unmodified	_EQIAFVEKF_					0	0	0			REV__nc|ENSG00000185404|Q9H930-2|SP140L	REV__nc|ENSG00000185404|Q9H930-2|SP140L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7968139648438	2	555.795132	1109.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.614	1	88.614	88.114	89.114	0								0	0	0	0.24715	1	23416	23416		7.2892	0.18751	1		+		7628	18378	4096	4096	10127	10127					0.0253060975749122
EQIKEYHHL	9	Unmodified	_EQIKEYHHL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.8068237304688	2	598.806562	1195.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.402	1	20.402	19.902	20.902	0								0	0	0	0.2489	1	2527	2527		6.7232	0.99131	1				7629	6752	4097	4097	10128	10128					0.008596288749458836
EQIKEYHHL	9	Unmodified	_EQIKEYHHL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.3079833984375	2	598.806562	1195.59857	0.70095	0.00041974	0.023349	1.3982E-05	0.7243	0.00043372	598.806605876629	20.413	0.27828	20.36	20.275	20.553	-0.05291					11	9	2	0	0	0	0.33018	1	2566	2566		4.3292	1.334	1	65104			7630	6752	4097	4097	10129	10129					0.008596288749458836
EQIKLELTF	9	Unmodified	_EQIKLELTF_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8057250976562	2	560.816064	1119.61758	0.3541	0.00019858	0.67099	0.0003763	1.0251	0.00057489	560.8162068986752	71.519	0.65504	71.575	71.402	72.057	0.056572					45	23	3	0	0	0	0.23007	1	18300	18300		19.257	1.1106	1	408430			7631	845	4098	4098	10130	10130					0.0625516544596394
EQIRAARRPVA	11	Unmodified	_EQIRAARRPVA_					0	0	0			REV__ENST00000529244.1_1_11:65786296-65788320:-|nuORF	REV__ENST00000529244.1_1_11:65786296-65788320:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.87109375	2	633.873102	1265.73165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.23	1	105.23	104.73	105.73	-0.0027847								0	0	0	0.37609	1	27895	27895		2.4985	0	1		+		7632	21994	4099	4099	10131	10131					0.1094149305145038
EQITKFFLK	9	Unmodified	_EQITKFFLK_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.8235473632812	2	577.334424	1152.6543	0.099828	5.7634E-05	0.40153	0.00023182	0.50136	0.00028945	577.3345917812999	49.124	0.25327	49.156	49.072	49.326	0.032043					11	8	2	0	0	0	0.21447	1	11294	11294		21.537	9.8967	1	101700			7633	5779	4100	4100	10132	10132					0.08407462062541526
EQITKFFLK	9	Unmodified	_EQITKFFLK_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	577.334424	1152.6543	0.3633	0.00020974	0.34463	0.00019897	0.70793	0.00040871	577.3346486208363	49.118	0.37694	49.118	48.944	49.321	0	-0.057865	-9.9467E-05	NaN	21.537	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79755			7634	5779	4100	4100							0.08407462062541526
EQITKFFLK	9	Unmodified	_EQITKFFLK_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	577.334424	1152.6543	0.29751	0.00017176	0.59185	0.0003417	0.88936	0.00051346	577.8359568155454	49.209	0.29043	49.253	49.135	49.425	0.044891	0.077575	0.00018599	NaN	21.537	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119370			7635	5779	4100	4100							0.08407462062541526
EQKKTKSVL	9	Unmodified	_EQKKTKSVL_					0	0	0			REV__ENST00000220562.8_1_8:28573132-28573249:+|nuORF	REV__ENST00000220562.8_1_8:28573132-28573249:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2561645507812	2	530.821681	1059.62881	0.64155	0.00034055	0.36403	0.00019323	1.0056	0.00053378	530.8219717884557	21.126	0.25671	21.016	20.864	21.121	-0.11003					10	8	2	0	0	0	0.26168	1	2760	2760		1.8442	0	1	46379	+		7636	19424	4101	4101	10133	10133					0.10137987540133508
EQKRRALE	8	Unmodified	_EQKRRALE_					0	0	0			REV__GIGYF2|p.I1041Lfs*9|1|0.12|ENSG00000204120|chr2:232844390-232844390|A/-|frameshift_variant	REV__GIGYF2|p.I1041Lfs*9|1|0.12|ENSG00000204120|chr2:232844390-232844390|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8141479492188	2	515.293622	1028.57269	-0.030458	-1.5695E-05	0.49986	0.00025758	0.46941	0.00024188	515.2938953841098	12.414	0.13572	12.414	12.332	12.468	0					6	3	2	0	0	0	0.31088	1	100	100		28.487	0	1	31913	+		7637	18917	4102	4102	10134	10134					0.05954779423336731
EQKSRFWLF	9	Unmodified	_EQKSRFWLF_					0	0	0			REV__nc|ENSG00000145555|Q9HD67-3|MYO10	REV__nc|ENSG00000145555|Q9HD67-3|MYO10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5764465332031	3	414.220624	1239.64004	-0.44789	-0.00018552	-0.22471	-9.3079E-05	-0.6726	-0.0002786	414.55492435108573	60.166	0.41033	60.166	59.977	60.387	0					18	14	2	0	0	0	0.25123	1	14677	14677		8.1555	4.5685	1	238320	+		7638	16295	4103	4103	10135	10135					0.029808096342549106
EQKTRYTNLL	10	Unmodified	_EQKTRYTNLL_					0	0	0			REV__COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	REV__COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.8112182617188	2	633.346052	1264.67755	0.36863	0.00023347	-0.31498	-0.00019949	0.05365	3.3979E-05	633.3461726541005	42.324	0.52411	42.409	42.18	42.704	0.085197					30	18	3	0	0	0	0.31433	1	9219	9219		17.113	7.039	1	404010	+		7639	13240	4104	4104	10136	10136					0.05579856109261527
EQKTRYTNLL	10	Unmodified	_EQKTRYTNLL_					0	0	0			REV__COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	REV__COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8113403320312	2	633.346052	1264.67755	0.51892	0.00032865	-0.91022	-0.00057648	-0.3913	-0.00024783	633.3457274860702	42.227	0.53993	42.318	42.177	42.717	0.091358					29	18	3	0	0	0	0.31701	1	9186	9186		8.1555	5.1603	1	397710	+		7640	13240	4104	4104	10137	10137					0.05579856109261527
EQLFLFPQIY	10	Unmodified	_EQLFLFPQIY_					0	0	0			REV__ENST00000273317.4_1_3:45718871-45719018:+|nuORF	REV__ENST00000273317.4_1_3:45718871-45719018:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.3450927734375	2	649.344989	1296.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.31	1	102.31	101.81	102.81	0								0	0	0	0.37739	1	27236	27236		3.2813	0	1		+		7641	19683	4105	4105	10138	10138					0.038954273714352894
EQLFLVVALAP	11	Unmodified	_EQLFLVVALAP_					0	0	0			REV__nc|ENSG00000150510|Q86V42-3|FAM124A	REV__nc|ENSG00000150510|Q86V42-3|FAM124A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3572387695312	2	600.355357	1198.69616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.649	1	94.732	94.232	95.232	0.082779								0	0	0	0.38071	1	25251	25251		1.4819	0.15237	1		+		7642	16500	4106	4106	10139	10139					0.1047601775107978
EQLHENLF	8	Unmodified	_EQLHENLF_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.239990234375	2	515.253631	1028.49271	0.24144	0.0001244	-0.71738	-0.00036963	-0.47594	-0.00024523	515.2531680376696	55.606	0.44541	55.587	55.379	55.824	-0.019081					40	16	3	0	0	0	0.43727	1	13357	13357		10.183	0	1	626910	+		7643	14768	4107	4107	10140	10140					-0.020397069705268223
EQLHTKDKL	9	Unmodified	_EQLHTKDKL_					0	0	0			REV__ENSG00000117724|ENST00000366955|CENPF	REV__ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3084716796875	2	556.308938	1110.60332	0.29393	0.00016352	-1.1013	-0.00061264	-0.80732	-0.00044912	556.3081756519304	80.655	2.6143	80.655	79.467	82.081	0					213	108	2	0	0	0	0.29638	1	20782	20782		9.3831	1.7742	1	664990	+		7644	14990	4108	4108	10141	10141					0.0524451301771478
EQLHTKDKL	9	Unmodified	_EQLHTKDKL_					0	0	0			REV__ENSG00000117724|ENST00000366955|CENPF	REV__ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3087768554688	2	556.308938	1110.60332	0.1632	9.0789E-05	-0.93979	-0.00052281	-0.77659	-0.00043202	556.3082798674587	80.361	2.4792	80.426	79.622	82.101	0.065094					209	106	2	0	0	0	0.31417	1	20995	20995		6.7232	6.7232	1	805360	+		7645	14990	4108	4108	10142	10142					0.0524451301771478
EQLIPCTM	8	Unmodified	_EQLIPCTM_					0	0	0		nc|ENSG00000168944|Q8N960-3|CEP120;nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120	nc|ENSG00000168944|Q8N960-3|CEP120	nc|ENSG00000168944|Q8N960-3|CEP120	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7222595214844	2	467.722264	933.429975	-0.0083929	-3.9255E-06	-0.032073	-1.5001E-05	-0.040466	-1.8927E-05	467.72230611173154	70.023	0.98774	70.023	69.618	70.605	0					90	35	4	0	0	0	0.22007	2	17689	17689;17732		39.95	27.629	1	1066600			7646	6315	4109	4109	10143;10144	10143					-0.03940312354586695
EQLIPCTM	8	Unmodified	_EQLIPCTM_					0	0	0		nc|ENSG00000168944|Q8N960-3|CEP120;nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120	nc|ENSG00000168944|Q8N960-3|CEP120	nc|ENSG00000168944|Q8N960-3|CEP120	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7222900390625	2	467.722264	933.429975	0.0085598	4.0036E-06	-0.085755	-4.0109E-05	-0.077195	-3.6106E-05	467.7222844227059	69.953	0.97069	70.019	69.609	70.579	0.066048					84	34	4	0	0	0	0.35947	2	17723	17676;17723		24.021	24.021	1	1113800			7647	6315	4109	4109	10145;10146	10146					-0.03940312354586695
EQLIPCTM	8	Unmodified	_EQLIPCTM_					0	0	0		nc|ENSG00000168944|Q8N960-3|CEP120;nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120	nc|ENSG00000168944|Q8N960-3|CEP120	nc|ENSG00000168944|Q8N960-3|CEP120	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.72222900390625	2	467.722264	933.429975	0.20009	9.3586E-05	-0.0036081	-1.6876E-06	0.19648	9.1898E-05	467.7222071533621	70.037	0.93071	70.015	69.621	70.552	-0.022087					75	33	3	0	0	0	0.28276	2	17724	17680;17724		32.786	24.021	1	1098100			7648	6315	4109	4109	10147;10148	10148					-0.03940312354586695
EQLLKKGKS	9	Unmodified	_EQLLKKGKS_					0	0	0		ENST00000503074.1_1_5:35659153-35697983:+|nuORF;SPEF2|p.K758Nfs*27|1|0.31|ENSG00000152582|chr5:35700624-35700624|A/-|frameshift_variant;nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2	ENST00000503074.1_1_5:35659153-35697983:+|nuORF	ENST00000503074.1_1_5:35659153-35697983:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.5223999023438	2	515.816399	1029.61824	0.31256	0.00016122	-0.10023	-5.1701E-05	0.21233	0.00010952	515.8162723134385	17.321	0.53799	17.321	17.122	17.66	0					29	18	2	0	0	0	0.35608	1	1547	1547		0.45834	0	1	95454			7649	5027	4110	4110	10149	10149					0.10462004885698661
EQLLQELSY	9	Unmodified	_EQLLQELSY_					0	0	0			REV__ENSG00000266074|ENST00000675386|BAHCC1	REV__ENSG00000266074|ENST00000675386|BAHCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.5996704101562	2	561.787504	1121.56045	0.061187	3.4374E-05	0.038139	2.1426E-05	0.099326	5.58E-05	561.7873837909702	22.597	0.55276	22.552	22.321	22.873	-0.044867					22	18	2	0	0	0	0.25431	1	3264	3264		9.3831	0	1	93372	+		7650	19299	4111	4111	10150	10150					0.004536981696446674
EQLLQELSY	9	Unmodified	_EQLLQELSY_					0	0	0			REV__ENSG00000266074|ENST00000675386|BAHCC1	REV__ENSG00000266074|ENST00000675386|BAHCC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	561.787504	1121.56045	0.12913	7.2545E-05	-0.13849	-7.7802E-05	-0.0093592	-5.2579E-06	561.7873994391344	22.447	0.42327	22.447	22.252	22.675	0	-0.052575	-8.963E-05	NaN	9.3831	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90498	+		7651	19299	4111	4111							0.004536981696446674
EQLLQQNK	8	Unmodified	_EQLLQQNK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;ATRX|p.N1318Ifs*28|1|0.32|ENSG00000085224|chrX:77663549-77663549|T/-|frameshift_variant;nc|ENSG00000085224|P46100-6|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3038330078125	2	500.774731	999.534909	0.23758	0.00011897	-0.066401	-3.3252E-05	0.17118	8.5721E-05	500.77460833890336	19.709	0.3876	19.709	19.461	19.849	0					17	13	2	0	0	0	0.34353	1	2264	2264		4.756	0	1	30856			7652	1254	4112	4112	10151	10151					0.035122684378507074
EQLLSERRLVR	11	Unmodified	_EQLLSERRLVR_					0	0	0		ENSG00000205078|ENST00000378644|SYCE1L	ENSG00000205078|ENST00000378644|SYCE1L	ENSG00000205078|ENST00000378644|SYCE1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.6238098144531	3	466.944042	1397.8103	-0.39184	-0.00018297	-2.6042	-0.001216	-2.9961	-0.001399	466.9427502405313	101.84	0.065674	101.84	101.81	101.88	0					12	8	2	0	0	0	0.33296	1	27148	27148		2.6312	1.3016	1	58855			7653	8269	4113	4113	10152	10152					0.12730300565885955
EQLYCWAPW	9	Unmodified	_EQLYCWAPW_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;nc|ENSG00000179532|Q96M86-4|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.2660522460938	2	598.265684	1194.51682	0.079099	4.7322E-05	-0.22963	-0.00013738	-0.15053	-9.0056E-05	598.265783944619	14.822	0.27988	14.757	14.618	14.898	-0.064414					19	9	3	0	0	0	0.33018	1	854	854		4.3292	0.38484	1	48840			7654	7128	4114	4114	10153	10153					-0.07266189808524359
EQLYCWAPW	9	Unmodified	_EQLYCWAPW_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;nc|ENSG00000179532|Q96M86-4|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	598.265684	1194.51682	0.17146	0.00010258	-0.068234	-4.0822E-05	0.10322	6.1754E-05	598.2657579326273	14.672	0.39324	14.672	14.531	14.925	0	-0.049244	4.2036E-05	NaN	4.3292	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67310			7655	7128	4114	4114							-0.07266189808524359
EQLYCWAPW	9	Unmodified	_EQLYCWAPW_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;nc|ENSG00000179532|Q96M86-4|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	598.265684	1194.51682	0.24067	0.00014398	-0.028501	-1.7051E-05	0.21217	0.00012693	598.265701621093	14.843	0.25735	14.734	14.56	14.818	-0.10981	0.012825	8.9578E-05	NaN	4.3292	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59798			7656	7128	4114	4114							-0.07266189808524359
EQMAAYFGF	9	Oxidation (M)	_EQM(Oxidation (M))AAYFGF_		EQM(1)AAYFGF		EQM(65)AAYFGF	0	0	1		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8330688476562	2	540.228768	1078.44298	0.54926	0.00029673	3.7725	0.002038	4.3218	0.0023348	540.2306022092574	68.603	1.1821	68.603	68.303	69.485	0					133	42	5	0	0	0	0.066761	1	17321	17321		65.235	21.377	1	6017900			7657	4153	4115	4115	10154	10154		533			-0.09310157970844557
EQMAAYFGF	9	Oxidation (M)	_EQM(Oxidation (M))AAYFGF_		EQM(1)AAYFGF		EQM(96)AAYFGF	0	0	1		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2311401367188	2	540.228768	1078.44298	0.46164	0.00024939	3.8321	0.0020702	4.2937	0.0023196	540.2306501498997	68.565	1.1042	68.637	68.33	69.434	0.071938					140	40	5	0	0	0	0.0037552	1	17324	17324		96.285	25.151	1	6776900			7658	4153	4115	4115	10155	10155		533			-0.09310157970844557
EQMAAYFGF	9	Oxidation (M)	_EQM(Oxidation (M))AAYFGF_		EQM(1)AAYFGF		EQM(56)AAYFGF	0	0	1		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8323364257812	2	540.228768	1078.44298	0.58929	0.00031835	3.505	0.0018935	4.0943	0.0022119	540.23054106474	68.676	1.2789	68.657	68.345	69.624	-0.01915					133	45	5	0	0	0	0.09064	1	17363	17363		56.177	20.05	1	6650400			7659	4153	4115	4115	10156	10156		533			-0.09310157970844557
EQNIKQIGTF	10	Unmodified	_EQNIKQIGTF_					0	0	0		ENST00000498242.5_1_2:233415434-233422740:+|nuORF;nc|ENSG00000135930|O60573-2|EIF4E2;ENSG00000135930|ENST00000258416|EIF4E2;EIF4E2|p.R138Qfs*111|1|0.05|ENSG00000135930|chr2:232566865-232566866|-/AACTCTATAGAAAAACT|frameshift_variant	ENST00000498242.5_1_2:233415434-233422740:+|nuORF	ENST00000498242.5_1_2:233415434-233422740:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3427124023438	2	589.31422	1176.61389	0.52652	0.00031029	-2.3308	-0.0013736	-1.8043	-0.0010633	589.312903845873	82.602	0.27057	82.602	82.462	82.733	0					11	9	2	0	0	0	0.3144	1	21609	21609		13.042	0.16986	1	149950			7660	282	4116	4116	10157	10157					0.032644956721242124
EQNNPRLL	8	Unmodified	_EQNNPRLL_					0	0	0		ENSG00000145016|ENST00000296343|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;nc|ENSG00000145016|Q92622-3|RUBCN	ENSG00000145016|ENST00000296343|RUBCN	ENSG00000145016|ENST00000296343|RUBCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.80126953125	2	492.267073	982.519593	0.36636	0.00018034	0.090958	4.4776E-05	0.45731	0.00022512	492.2671752612277	29.019	0.65216	29.031	28.737	29.389	0.012266					61	22	4	0	0	0	0.32886	1	5163	5163		21.747	0	1	501780			7661	4629	4117	4117	10158	10158					0.027634016406636874
EQPKMRPNWR	10	Unmodified	_EQPKMRPNWR_					0	0	0			REV__nc|ENSG00000087053|Q13614-2|MTMR2	REV__nc|ENSG00000087053|Q13614-2|MTMR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.2713623046875	3	447.899667	1340.67717	0.18254	8.1759E-05	1.9142	0.00085736	2.0967	0.00093912	448.23522430132135	35.441	0.41302	35.517	35.429	35.842	0.075306					16	14	2	0	0	0	0.31942	1	7134	7134		1.7423	0	1	163820	+		7662	13984	4118	4118	10159	10159					0.020461579083757897
EQRFRKKRRRS	11	Unmodified	_EQRFRKKRRRS_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.6442260742188	3	516.309829	1545.90766	0.22092	0.00011406	-0.27674	-0.00014288	-0.055814	-2.8817E-05	516.3093429895407	93.813	0.71673	93.813	93.357	94.074	0					184	58	5	0	0	0	0.48558	2	25009	25009;25061		0	0	1	606830			7663	7650	4119	4119	10160;10161	10160					0.1565412728539286
EQRFRKKRRRS	11	Unmodified	_EQRFRKKRRRS_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.6443481445312	3	516.309829	1545.90766	0.17324	8.9445E-05	-0.17522	-9.047E-05	-0.0019847	-1.0247E-06	516.3094778110469	94.561	1.3652	94.561	94.018	95.383	0					455	122	4	0	0	0	0.48558	10	25097	25097;25144;25181;25217;25256;25294;25334;25372;25408;25446		0	0	1	985900			7664	7650	4119	4119	10162;10163;10164;10165;10166;10167;10168;10169;10170;10171	10162					0.1565412728539286
EQRFRKKRRRS	11	Unmodified	_EQRFRKKRRRS_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.3096313476562	3	516.309829	1545.90766	0.21705	0.00011207	-0.29516	-0.00015239	-0.078109	-4.0329E-05	516.3093701428617	93.769	0.84499	93.855	93.266	94.111	0.08667					209	69	4	0	0	0	0.48558	1	24973	24973		0	0	1	775280			7665	7650	4119	4119	10172	10172					0.1565412728539286
EQRFRKKRRRS	11	Unmodified	_EQRFRKKRRRS_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.6444091796875	3	516.309829	1545.90766	0.19486	0.00010061	-0.15551	-8.0293E-05	0.039343	2.0313E-05	516.3095018533879	94.521	1.0416	94.604	94.011	95.053	0.082779					321	85	5	0	0	0	0.48486	6	25145	25065;25108;25145;25184;25225;25306		0.094841	0.094841	1	1418200			7666	7650	4119	4119	10173;10174;10175;10176;10177;10178	10175					0.1565412728539286
EQRFRKKRRRS	11	Unmodified	_EQRFRKKRRRS_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.3094482421875	3	516.309829	1545.90766	0.17571	9.0719E-05	-0.26768	-0.00013821	-0.091978	-4.7489E-05	516.30935818699	95.103	0.51475	95.186	94.893	95.408	0.082779					144	51	4	0	0	0	0.48558	3	25347	25347;25390;25437		0	0	1	777040			7667	7650	4119	4119	10179;10180;10181	10179					0.1565412728539286
EQRFRKKRRRS	11	Unmodified	_EQRFRKKRRRS_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.3096923828125	3	516.309829	1545.90766	0.27109	0.00013997	0.10494	5.4179E-05	0.37602	0.00019414	516.3096497293061	96.246	2.6495	96.242	95.275	97.925	-0.0038223					830	265	5	0	0	0	0.48486	1	25974	25974		0.094841	0.094841	1	2358400			7668	7650	4119	4119	10182	10182					0.1565412728539286
EQRFRKKRRRS	11	Unmodified	_EQRFRKKRRRS_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	516.309829	1545.90766	0.17324	8.9445E-05	-0.17522	-9.047E-05	-0.0019847	-1.0247E-06	516.3094778110469	94.561	1.3652	94.561	94.018	95.383	0	-0.021638	-1.4046E-05	NaN	0.094841	455	122	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	985900			7669	7650	4119	4119							0.1565412728539286
EQRLKKKW	8	Unmodified	_EQRLKKKW_					0	0	0			REV__ADCY4|p.V1051Kfs*2|1|0.04|ENSG00000129467|chr14:24318499-24318500|-/TT|frameshift_variant	REV__ADCY4|p.V1051Kfs*2|1|0.04|ENSG00000129467|chr14:24318499-24318500|-/TT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3193969726562	2	558.337833	1114.66111	-0.053761	-3.0017E-05	-2.9379	-0.0016403	-2.9916	-0.0016703	558.3359421221884	12.241	0.078905	12.241	12.194	12.273	0					4	2	2	0	0	0	0.34414	1	64	64		2.0598	0.21551	1	9982.8	+		7670	13080	4120	4120	10183	10183					0.1083681973379953
EQRYGLSCGRL	11	Unmodified	_EQRYGLSCGRL_					0	0	0		ENST00000506628.1_1_5:95242411-95297425:-|nuORF;nc|ENSG00000118985|O00472-2|ELL2;ENSG00000118985|ENST00000237853|ELL2	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.59130859375	3	427.883795	1280.62955	-0.27358	-0.00011706	-1.0855	-0.00046447	-1.3591	-0.00058153	427.88323778744393	16.662	0.39309	16.548	16.33	16.723	-0.11434					32	13	3	0	0	0	0.32774	1	1357	1357		13.519	3.2034	1	51748			7671	2854	4121	4121	10184	10184					0.0004645891754080367
EQRYGLSCGRL	11	Unmodified	_EQRYGLSCGRL_					0	0	0		ENST00000506628.1_1_5:95242411-95297425:-|nuORF;nc|ENSG00000118985|O00472-2|ELL2;ENSG00000118985|ENST00000237853|ELL2	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	ENST00000506628.1_1_5:95242411-95297425:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.59130859375	3	427.883795	1280.62955	-0.097218	-4.1598E-05	-1.09	-0.0004664	-1.1872	-0.000508	428.21767636558747	16.436	0.46827	16.373	16.205	16.674	-0.062534					31	15	3	0	0	0	0.32774	1	1315	1315		13.519	4.5424	1	75026			7672	2854	4121	4121	10185	10185					0.0004645891754080367
EQTLVAVSSM	10	Unmodified	_EQTLVAVSSM_					0	0	0			REV__ENSG00000115677|ENST00000310931|HDLBP	REV__ENSG00000115677|ENST00000310931|HDLBP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.769287109375	2	532.768257	1063.52196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.88	1	25.88	25.38	26.38	0								0	0	0	0.32455	1	4184	4184		24.882	0	1		+		7673	14891	4122	4122	10186	10186					-0.007259307365302448
EQVLRNPH	8	Unmodified	_EQVLRNPH_					0	0	0		nc|ENSG00000289701|Q9H257-2|CARD9;ENSG00000187796|ENST00000371732|CARD9;ENST00000481053.5_1_9:139259475-139262364:-|nuORF;ENST00000489932.2_1_9:139258756-139262364:-|nuORF	nc|ENSG00000289701|Q9H257-2|CARD9	nc|ENSG00000289701|Q9H257-2|CARD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7904357910156	2	496.76724	991.519927	0.21362	0.00010612	-0.36142	-0.00017954	-0.1478	-7.3422E-05	496.7670982829878	19.013	0.61959	18.896	18.556	19.175	-0.11739					41	21	3	0	0	0	0.34414	1	2013	2013		2.0598	0	1	93823			7674	7710	4123	4123	10187	10187					0.023828213605156634
EQVRSPGRRA	10	Unmodified	_EQVRSPGRRA_					0	0	0		ENST00000555117.1_1_14:31343755-31344058:+|nuORF	ENST00000555117.1_1_14:31343755-31344058:+|nuORF	ENST00000555117.1_1_14:31343755-31344058:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3208618164062	2	578.320703	1154.62685	0.38603	0.00022325	0.4927	0.00028494	0.87872	0.00050818	578.3207795532456	82.408	2.4147	82.387	81.478	83.892	-0.020584					239	99	3	0	0	0	0.36786	1	21304	21304		9.3831	2.2814	1	1098200			7675	11841	4124	4124	10188	10188					0.05572371574908175
EQVSIRPII	9	Unmodified	_EQVSIRPII_					0	0	0			REV__ENST00000433223.2_9:43400186-43400471:+|nuORF	REV__ENST00000433223.2_9:43400186-43400471:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3014526367188	2	527.816399	1053.61824	0.41263	0.00021779	0.67098	0.00035415	1.0836	0.00057194	527.816952832461	21.865	0.60336	21.815	21.548	22.151	-0.049377					28	21	2	0	0	0	0.25431	1	2985	2985		9.3831	2.0939	1	152800	+		7676	20965	4125	4125	10189	10189					0.09358004885712035
EQWTDLDF	8	Unmodified	_EQWTDLDF_					0	0	0			REV__nc|ENSG00000116852|O75037-3|KIF21B	REV__nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.79052734375	2	527.229822	1052.44509	0.94168	0.00049648	-0.30974	-0.00016331	0.63193	0.00033317	527.2296145241905	36.591	0.44051	36.684	36.51	36.951	0.093018					21	15	2	0	0	0	0.33993	1	7426	7426		11.64	3.7301	1	126770	+		7677	14945	4126	4126	10190	10190					-0.07903405961383214
EQYFGDSDEE	10	Unmodified	_EQYFGDSDEE_					0	0	0			REV__ENST00000451650.1_1_3:46184698-46185163:-|nuORF	REV__ENST00000451650.1_1_3:46184698-46185163:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.7262573242188	2	609.725298	1217.43604	0.32414	0.00019764	0.64204	0.00039147	0.96618	0.0005891	609.7256897707728	31.859	0.70751	31.9	31.748	32.456	0.040991					40	24	2	0	0	0	0.37133	1	6016	6016		8.7454	3.4485	1	745220	+		7678	21120	4127	4127	10191	10191					-0.16397844108382742
EQYFGDSDEE	10	Unmodified	_EQYFGDSDEE_					0	0	0			REV__ENST00000451650.1_1_3:46184698-46185163:-|nuORF	REV__ENST00000451650.1_1_3:46184698-46185163:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	609.725298	1217.43604	0.41046	0.00025027	0.84362	0.00051438	1.2541	0.00076465	609.7260323512694	31.748	0.89917	31.791	31.458	32.357	0.042366	-0.0036879	2.8832E-05	NaN	8.7454	70	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	750500	+		7679	21120	4127	4127							-0.16397844108382742
EQYFGDSDEE	10	Unmodified	_EQYFGDSDEE_					0	0	0			REV__ENST00000451650.1_1_3:46184698-46185163:-|nuORF	REV__ENST00000451650.1_1_3:46184698-46185163:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	609.725298	1217.43604	0.32414	0.00019764	0.64204	0.00039147	0.96618	0.0005891	609.7256897707728	31.859	0.70751	31.9	31.748	32.456	0.040991	0.10538	-0.00021699	NaN	8.7454	40	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	745220	+		7680	21120	4127	4127							-0.16397844108382742
ERAAFPRRL	9	Unmodified	_ERAAFPRRL_					0	0	0		ENSG00000198042|ENST00000360128|MAK16;ENST00000517567.5_1_8:33346262-33346340:+|nuORF;ENST00000520763.5_1_8:33342724-33346658:+|nuORF	ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3245239257812	2	558.325257	1114.63596	0.39281	0.00021932	-0.37666	-0.0002103	0.016156	9.0205E-06	558.3247174112139	89.808	0.96431	89.899	89.483	90.448	0.090569					160	73	3	0	0	0	0.31417	1	23862	23862		6.7232	2.3939	1	400880			7681	8030	4128	4128	10192	10192					0.08322764931222082
ERAALRIT	8	Unmodified	_ERAALRIT_					0	0	0		ENST00000265801.6_2_8:20104216-20104552:-|nuORF	ENST00000265801.6_2_8:20104216-20104552:-|nuORF	ENST00000265801.6_2_8:20104216-20104552:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7788391113281	2	465.279983	928.545414	0.50412	0.00023456	-1.2968	-0.00060338	-0.79268	-0.00036882	465.2793482823377	78.853	0.9615	78.823	78.48	79.442	-0.030434					82	39	3	0	0	0	0.344	1	20480	20480		2.5775	1.8871	1	470910			7682	9055	4129	4129	10193	10193					0.07828295882916336
ERACFRCLKTK	11	Unmodified	_ERACFRCLKTK_					0	0	0		ENST00000566587.5_1_16:1360203-1364029:+|nuORF	ENST00000566587.5_1_16:1360203-1364029:+|nuORF	ENST00000566587.5_1_16:1360203-1364029:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.77655029296875	3	452.240925	1353.70094	-1.5768	-0.00071308	0.37729	0.00017063	-1.1995	-0.00054246	452.2412063883215	34.718	0.12917	34.794	34.685	34.814	0.075302					5	4	2	0	0	0	0.33207	1	6880	6880		3.3557	0	1	62262			7683	11982	4130	4130	10194	10194					0.038242553505142496
ERARAGLP	8	Unmodified	_ERARAGLP_					0	0	0		ENST00000430430.5_1_8:81398555-81399056:+|nuORF	ENST00000430430.5_1_8:81398555-81399056:+|nuORF	ENST00000430430.5_1_8:81398555-81399056:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7590026855469	2	435.251226	868.487899	0.02235	9.7279E-06	-0.29497	-0.00012839	-0.27262	-0.00011866	435.25099475410707	82.291	0.75782	82.291	82.024	82.782	0					45	27	2	0	0	0	0.34039	1	21590	21590		15.847	3.3156	1	385760			7684	10467	4131	4131	10195	10195					0.048394536773685104
ERARAGLP	8	Unmodified	_ERARAGLP_					0	0	0		ENST00000430430.5_1_8:81398555-81399056:+|nuORF	ENST00000430430.5_1_8:81398555-81399056:+|nuORF	ENST00000430430.5_1_8:81398555-81399056:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	435.251226	868.487899	-0.036367	-1.5829E-05	-0.1581	-6.8812E-05	-0.19446	-8.4641E-05	435.2510492340812	82.26	1.0455	82.328	81.849	82.895	0.068993	0.037265	4.0841E-05	NaN	15.847	63	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428750			7685	10467	4131	4131							0.048394536773685104
ERARAGLP	8	Unmodified	_ERARAGLP_					0	0	0		ENST00000430430.5_1_8:81398555-81399056:+|nuORF	ENST00000430430.5_1_8:81398555-81399056:+|nuORF	ENST00000430430.5_1_8:81398555-81399056:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	435.251226	868.487899	0.039624	1.7246E-05	-0.10038	-4.3689E-05	-0.060754	-2.6443E-05	435.25107924530573	82.276	0.73211	82.254	82.084	82.816	-0.022018	-0.037405	9.1087E-05	NaN	15.847	48	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565520			7686	10467	4131	4131							0.048394536773685104
ERCFLLNEI	9	Unmodified	_ERCFLLNEI_					0	0	0		nc|ENSG00000115266|O95996-2|APC2;nc|ENSG00000115266|O95996-3|APC2;ENSG00000115266|ENST00000590469|APC2;ENST00000593146.1_3_19:1452985-1457289:+|nuORF	nc|ENSG00000115266|O95996-2|APC2	nc|ENSG00000115266|O95996-2|APC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.303466796875	2	568.792066	1135.56958	0.077131	4.3872E-05	0.015485	8.8079E-06	0.092617	5.268E-05	568.792363500857	59.64	0.52044	59.64	59.267	59.787	0					44	17	3	0	0	0	0.15219	1	14545	14545		30.637	3.7529	1	674960			7687	2626	4132	4132	10196	10196					0.007217682543114279
ERCFLLNEI	9	Unmodified	_ERCFLLNEI_					0	0	0		nc|ENSG00000115266|O95996-2|APC2;nc|ENSG00000115266|O95996-3|APC2;ENSG00000115266|ENST00000590469|APC2;ENST00000593146.1_3_19:1452985-1457289:+|nuORF	nc|ENSG00000115266|O95996-2|APC2	nc|ENSG00000115266|O95996-2|APC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.3035278320312	2	568.792066	1135.56958	0.27815	0.00015821	0.22765	0.00012949	0.5058	0.0002877	568.7926932689239	59.463	0.50453	59.558	59.266	59.771	0.095093					42	17	3	0	0	0	0.15219	1	14489	14489		30.637	3.7529	1	542080			7688	2626	4132	4132	10197	10197					0.007217682543114279
ERDITLRHLL	10	Unmodified	_ERDITLRHLL_					0	0	0		ENST00000465832.5_1_7:117008647-117066986:-|nuORF;ENST00000463182.5_1_7:117008647-117066914:-|nuORF;nc|ENSG00000154438|Q8WWH4-2|ASZ1;ENSG00000154438|ENST00000284629|ASZ1	ENST00000465832.5_1_7:117008647-117066986:-|nuORF	ENST00000465832.5_1_7:117008647-117066986:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.368896484375	2	633.369861	1264.72517	-0.059894	-3.7935E-05	-0.31515	-0.00019961	-0.37505	-0.00023754	633.3691202019567	104.95	0.25755	104.95	104.8	105.06	0					58	37	2	0	0	0	0.41085	1	27849	27849		1.4819	0.28856	1	99537			7689	5128	4133	4133	10198	10198					0.10339555100085818
ERDITLRHLL	10	Unmodified	_ERDITLRHLL_					0	0	0		ENST00000465832.5_1_7:117008647-117066986:-|nuORF;ENST00000463182.5_1_7:117008647-117066914:-|nuORF;nc|ENSG00000154438|Q8WWH4-2|ASZ1;ENSG00000154438|ENST00000284629|ASZ1	ENST00000465832.5_1_7:117008647-117066986:-|nuORF	ENST00000465832.5_1_7:117008647-117066986:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3703002929688	2	633.369861	1264.72517	0.41537	0.00026308	-0.82686	-0.00052371	-0.41149	-0.00026063	633.3691613820656	102.9	0.25587	102.9	102.72	102.98	-0.0033646					46	33	2	0	0	0	0.41085	1	27366	27366		1.4819	0	1	145240			7690	5128	4133	4133	10199	10199					0.10339555100085818
ERDRKEKLIQ	10	Unmodified	_ERDRKEKLIQ_					0	0	0		ENSG00000065518|ENST00000184266|NDUFB4	ENSG00000065518|ENST00000184266|NDUFB4	ENSG00000065518|ENST00000184266|NDUFB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.93310546875	3	438.921126	1313.74155	-0.29842	-0.00013098	0.035472	1.5569E-05	-0.26295	-0.00011541	439.25378549371345	28.061	0.63648	28.062	27.657	28.294	0.0004673					47	22	3	0	0	0	0.31899	1	4740	4740		7.4771	2.0744	1	188100			7691	817	4134	4134	10200	10200					0.09722636266178597
ERDRKEKLIQ	10	Unmodified	_ERDRKEKLIQ_					0	0	0		ENSG00000065518|ENST00000184266|NDUFB4	ENSG00000065518|ENST00000184266|NDUFB4	ENSG00000065518|ENST00000184266|NDUFB4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	438.921126	1313.74155	-0.31488	-0.00013821	0.90401	0.00039679	0.58912	0.00025858	438.9226260939885	28.149	0.52037	28.149	27.789	28.31	0	0.032161	0.00044824	NaN	7.4771	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199720			7692	817	4134	4134							0.09722636266178597
EREEAEKVL	9	Unmodified	_EREEAEKVL_					0	0	0			REV__ENSG00000090863|ENST00000422840|GLG1	REV__ENSG00000090863|ENST00000422840|GLG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8347778320312	2	551.790578	1101.5666	0.21556	0.00011895	1.3983	0.00077158	1.6139	0.00089052	551.7915098236849	25.699	0.29434	25.699	25.504	25.798	0					12	9	2	0	0	0	0.25527	1	4107	4107		8.7454	0.58988	1	97186	+		7693	14051	4135	4135	10201	10201					0.01988216401127829
EREEMWQKI	9	Unmodified	_EREEMWQKI_					0	0	0		nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D	nc|ENSG00000112640|Q14738-3|PPP2R5D	nc|ENSG00000112640|Q14738-3|PPP2R5D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.8722839355469	3	416.872895	1247.59686	-1.2513	-0.00052165	-0.33187	-0.00013835	-1.5832	-0.00066	416.8727738713636	34.968	0.90335	34.968	34.588	35.492	0					52	32	2	0	0	0	0.22188	1	6961	6961		14.405	0	1	491160			7694	2447	4136	4136	10202	10202					-0.01703748205318334
EREERPDIK	9	Unmodified	_EREERPDIK_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3072509765625	2	586.306926	1170.5993	0.19052	0.0001117	-0.55403	-0.00032483	-0.36352	-0.00021313	586.3067740213079	17.899	0.78202	17.839	17.588	18.37	-0.060431					79	27	5	0	0	0	0.35563	1	1869	1869		0.52476	0	1	525550			7695	7531	4137	4137	10203	10203					0.020824235239842892
ERELQEIRHL	10	Unmodified	_ERELQEIRHL_					0	0	0			REV__nc|ENSG00000249961|Q8NA31-3|TERB1	REV__nc|ENSG00000249961|Q8NA31-3|TERB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7879333496094	3	441.577359	1321.71025	-0.30525	-0.00013479	-0.15528	-6.8569E-05	-0.46053	-0.00020336	441.5773625176429	34.204	0.25748	34.27	34.203	34.461	0.06636					10	8	2	0	0	0	0.32052	1	6747	6747		4.4062	0.28952	1	57689	+		7696	19213	4138	4138	10204	10204					0.062260632320885634
ERELRLAEKLL	11	Unmodified	_ERELRLAEKLL_					0	0	0			REV__ENSG00000171060|ENST00000304519|C8orf74	REV__ENSG00000171060|ENST00000304519|C8orf74	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2765197753906	3	457.276909	1368.8089	0.0078174	3.5747E-06	-0.41844	-0.00019134	-0.41062	-0.00018777	457.2769891830718	96.028	1.2203	96.106	95.817	97.038	0.077408					274	113	3	0	0	0	0.47633	1	25662	25662		1.2148	0.10508	1	852220	+		7697	17617	4139	4139	10205	10205					0.13924666477123537
EREQLLQAF	9	Unmodified	_EREQLLQAF_					0	0	0			REV__ENSG00000107816|ENST00000454422|LZTS2	REV__ENSG00000107816|ENST00000454422|LZTS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3297119140625	2	567.301113	1132.58767	0.23222	0.00013174	-2.8883	-0.0016385	-2.6561	-0.0015068	567.2992132544863	81.285	0.26556	81.285	81.147	81.412	0					15	11	2	0	0	0	0.25417	1	21187	21187		8.5933	1.8701	1	105040	+		7698	14565	4140	4140	10206	10206					0.026682265006684247
ERERVSAL	8	Unmodified	_ERERVSAL_					0	0	0			REV__nc|ENSG00000179915|Q9ULB1|NRXN1	REV__nc|ENSG00000179915|Q9ULB1|NRXN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2670593261719	2	480.267073	958.519593	0.14254	6.8457E-05	-0.067375	-3.2358E-05	0.075164	3.6099E-05	480.26693139571944	23.665	0.6842	23.593	23.34	24.024	-0.072559					56	23	3	0	0	0	0.32038	1	3559	3559		28.487	3.0875	1	412750	+		7699	18094	4141	4141	10207	10207					0.03867401640661683
EREVLMQK	8	Unmodified	_EREVLMQK_					0	0	0		RASGRF2|p.T394Nfs*26|1|0.23|ENSG00000113319|chr5:81085821-81085821|C/-|frameshift_variant;ENSG00000113319|ENST00000265080|RASGRF2	RASGRF2|p.T394Nfs*26|1|0.23|ENSG00000113319|chr5:81085821-81085821|C/-|frameshift_variant	RASGRF2|p.T394Nfs*26|1|0.23|ENSG00000113319|chr5:81085821-81085821|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.3042602539062	2	516.778959	1031.54336	0.22894	0.00011831	-2.4764	-0.0012798	-2.2475	-0.0011615	516.7774147974424	26.346	0.6525	26.346	26.106	26.759	0					33	22	2	0	0	0	0.32435	1	4422	4422		23.148	0	1	178900			7700	2493	4142	4142	10208	10208					0.02885499082822207
EREVSVPTF	9	Unmodified	_EREVSVPTF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-3|FADS2	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8174438476562	2	532.274564	1062.53457	0.73454	0.00039098	-2.9141	-0.0015511	-2.1796	-0.0011601	532.2760952099065	77.233	1.3196	77.233	76.902	78.221	0					107	48	5	0	0	0	0.20167	1	20016	20016		29.082	17.587	1	894490			7701	3816	4143	4143	10209	10209					0.0058084871798200766
ERFGPAQLPKT	11	Unmodified	_ERFGPAQLPKT_					0	0	0			REV__ENST00000520379.2_1_7:77814916-78119132:-|nuORF	REV__ENST00000520379.2_1_7:77814916-78119132:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3448486328125	2	622.343312	1242.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.403	1	99.403	98.903	99.903	0								0	0	0	0.37609	1	26594	26594		2.4985	0.84587	1		+		7702	18503	4144	4144	10210	10210					0.06044177317380672
ERFPSVQGV	9	Unmodified	_ERFPSVQGV_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.76776123046875	2	509.769448	1017.52434	-0.0098472	-5.0198E-06	-2.9006	-0.0014787	-2.9105	-0.0014837	509.76812463509987	13.53	0.53491	13.53	13.427	13.962	0					25	18	2	0	0	0	0.31763	1	473	473		6.2058	0.97511	1	94892	+		7703	17128	4145	4145	10211	10211					0.016282857834426068
ERFPSVQGV	9	Unmodified	_ERFPSVQGV_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.28802490234375	2	509.769448	1017.52434	-0.11238	-5.7289E-05	-3.156	-0.0016088	-3.2684	-0.0016661	509.7677779756939	13.605	0.35663	13.537	13.416	13.773	-0.067496					22	12	2	0	0	0	0.25779	1	465	465		6.2058	0.97511	1	81732	+		7704	17128	4145	4145	10212	10212					0.016282857834426068
ERFVKIPE	8	Unmodified	_ERFVKIPE_					0	0	0		ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8161926269531	2	509.290017	1016.56548	0.22631	0.00011525	0.97878	0.00049848	1.2051	0.00061374	509.7923393157333	40.891	0.35139	40.891	40.688	41.039	0					16	12	2	0	0	0	0.34039	1	8786	8786		15.847	0	1	82023			7705	6774	4146	4146	10213	10213					0.057860468229023354
ERHLKYIS	8	Unmodified	_ERHLKYIS_					0	0	0		nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3	nc|ENSG00000105639|P52333-2|JAK3	nc|ENSG00000105639|P52333-2|JAK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.322509765625	2	523.293091	1044.57163	0.23653	0.00012378	-0.48468	-0.00025363	-0.24814	-0.00012985	523.2929427983889	17.077	0.39073	16.96	16.746	17.137	-0.11739					23	13	3	0	0	0	0.34408	1	1557	1557		2.3027	0	1	44794			7706	1999	4147	4147	10214	10214					0.05112565054423612
ERHRLLEKI	9	Unmodified	_ERHRLLEKI_					0	0	0		nc|ENSG00000138180|Q53EZ4-2|CEP55;ENSG00000138180|ENST00000371485|CEP55	nc|ENSG00000138180|Q53EZ4-2|CEP55	nc|ENSG00000138180|Q53EZ4-2|CEP55	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.37109375	2	597.359296	1192.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.664	1	99.715	99.215	100.21	0.050888								0	0	0	0.264	1	26652	26652		1.8442	0	1				7707	4127	4148	4148	10215	10215					0.11539589791232174
ERIEKEYLQRL	11	Unmodified	_ERIEKEYLQRL_					0	0	0			REV__CON__H-INV:HIT000292931	REV__CON__H-INV:HIT000292931	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.9435729980469	3	492.943819	1475.80963	0.34422	0.00016968	-0.39194	-0.0001932	-0.047717	-2.3522E-05	492.94356552915986	24.774	1.017	24.774	24.279	25.296	0					87	34	4	0	0	0	0.47633	1	3882	3882		1.2148	0.70888	1	232540	+	+	7708	13247	4149	4149	10216	10216					0.09075461126167284
ERIFSEWLK	9	Unmodified	_ERIFSEWLK_					0	0	0			REV__HELZ2|p.D1355Vfs*86|1|0.31|ENSG00000130589|chr20:63564758-63564758|T/-|frameshift_variant	REV__HELZ2|p.D1355Vfs*86|1|0.31|ENSG00000130589|chr20:63564758-63564758|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.22119140625	3	403.220513	1206.63971	-0.086379	-3.483E-05	1.3407	0.00054061	1.2544	0.00050578	403.22119986799623	31.887	0.8963	31.928	31.772	32.669	0.040989					60	31	3	0	0	0	0.32885	1	6069	6069		4.5289	0.33936	1	732170	+		7709	15466	4150	4150	10217	10217					0.04465389914412299
ERINLFTQAR	10	Unmodified	_ERINLFTQAR_					0	0	0			REV__ZSCAN21|p.N246Mfs*240|1|0.3|ENSG00000166529|chr7:100063929-100063929|A/-|frameshift_variant	REV__ZSCAN21|p.N246Mfs*240|1|0.3|ENSG00000166529|chr7:100063929-100063929|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.5664367675781	3	416.566683	1246.67822	-0.38732	-0.00016134	-0.21224	-8.8413E-05	-0.59956	-0.00024976	416.56666398966865	39.309	1.2881	39.309	38.873	40.161	0					115	46	4	0	0	0	0.25219	1	8219	8219		17.863	0	1	2009400	+		7710	23366	4151	4151	10218	10218					0.06474695548968157
ERIRTELK	8	Unmodified	_ERIRTELK_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3	REV__ENSG00000109063|ENST00000583535|MYH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.81103515625	2	522.811648	1043.60874	0.10827	5.6605E-05	-0.57455	-0.00030038	-0.46627	-0.00024377	522.8113377678533	12.846	0.25792	12.747	12.611	12.869	-0.099291					13	8	2	0	0	0	0.45645	1	266	266		3.5965	0	1	35206	+		7711	14624	4152	4152	10219	10219					0.08868236600164892
ERIRTELK	8	Unmodified	_ERIRTELK_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3	REV__ENSG00000109063|ENST00000583535|MYH3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	522.811648	1043.60874	0.12163	6.3592E-05	-0.60185	-0.00031466	-0.48022	-0.00025106	522.8114624543805	12.811	0.39906	12.811	12.526	12.925	0	0.030201	-0.00018671	NaN	3.5965	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30230	+		7712	14624	4152	4152							0.08868236600164892
ERIRTELK	8	Unmodified	_ERIRTELK_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3	REV__ENSG00000109063|ENST00000583535|MYH3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	522.811648	1043.60874	0.10827	5.6605E-05	-0.57455	-0.00030038	-0.46627	-0.00024377	522.8113377678533	12.846	0.25792	12.747	12.611	12.869	-0.099291	-0.034191	-0.00015816	NaN	3.5965	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35206	+		7713	14624	4152	4152							0.08868236600164892
ERIRTELK	8	Unmodified	_ERIRTELK_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3	REV__ENSG00000109063|ENST00000583535|MYH3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.811648	1043.60874	0.010291	5.3802E-06	-0.057926	-3.0284E-05	-0.047635	-2.4904E-05	522.8115800180685	12.853	0.26764	12.785	12.61	12.878	-0.067495	0.0039893	0.00038203	NaN	3.5965	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37578	+		7714	14624	4152	4152							0.08868236600164892
ERKEVIYYDI	10	Unmodified	_ERKEVIYYDI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.9004211425781	3	443.234599	1326.68197	-0.12197	-5.4061E-05	0.86216	0.00038214	0.74019	0.00032808	443.2356225759772	12.592	0.40247	12.592	12.498	12.9	0					20	13	3	0	0	0	0.32167	1	172	172		0.62683	0	1	32866	+		7715	16705;23038	4153	4153	10220	10220					0.03169320532151687
ERKKARDEGKK	11	Unmodified	_ERKKARDEGKK_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7769470214844	3	448.928392	1343.76335	0.34372	0.0001543	0.26709	0.00011991	0.61081	0.00027421	449.26291892837037	33.41	0.52192	33.477	33.182	33.704	0.06636					35	18	3	0	0	0	0.3299	1	6437	6437		6.6235	1.2207	1	276270			7716	2681	4154	4154	10221	10221					0.10521441014725497
ERKQAVRP	8	Unmodified	_ERKQAVRP_					0	0	0			REV__ENST00000397843.6_2_11:120302555-120308053:+|nuORF	REV__ENST00000397843.6_2_11:120302555-120308053:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2304382324219	2	492.290882	982.567212	0.24131	0.00011879	-2.2308	-0.0010982	-1.9894	-0.00097939	492.2890479008376	22.463	0.29441	22.375	22.217	22.512	-0.08761					19	10	3	0	0	0	0.34272	1	3197	3197		7.9102	0.62092	1	44439	+		7717	20677	4155	4155	10222	10222					0.07523100631510715
ERKRELEE	8	Unmodified	_ERKRELEE_					0	0	0		nc|ENSG00000099954|Q9BXF3-2|CECR2;ENSG00000099954|ENST00000262608|CECR2;nc|ENSG00000099954|Q9BXF3|CECR2	nc|ENSG00000099954|Q9BXF3-2|CECR2	nc|ENSG00000099954|Q9BXF3-2|CECR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.28955078125	2	544.78837	1087.56219	0.39818	0.00021692	0.086746	4.7258E-05	0.48492	0.00026418	544.7885504257263	16.712	0.72467	16.712	16.461	17.186	0					41	24	2	0	0	0	0.45307	1	1467	1467		4.756	0	1	152710			7718	1507	4156	4156	10223	10223					0.021907519782416784
ERKRKRWLYW	10	Unmodified	_ERKRKRWLYW_					0	0	0		ENSG00000175354|ENST00000309660|PTPN2	ENSG00000175354|ENST00000309660|PTPN2	ENSG00000175354|ENST00000309660|PTPN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3009338378906	3	507.624755	1519.85244	0.61256	0.00031095	-1.1821	-0.00060008	-0.56958	-0.00028913	507.958622721177	47.22	0.58658	47.22	46.992	47.578	0					32	20	2	0	0	0	0.32143	1	10654	10654		1.5923	0.57871	1	327750			7719	6860	4157	4157	10224	10224					0.11330320764955104
ERKRTHRLEG	10	Unmodified	_ERKRTHRLEG_					0	0	0			REV__ENST00000465851.1_1_2:196545249-196581758:+|nuORF	REV__ENST00000465851.1_1_2:196545249-196581758:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.8826904296875	2	641.360359	1280.70617	0.27873	0.00017877	0.903	0.00057915	1.1817	0.00075791	641.3609400688084	16.366	0.47167	16.252	16.139	16.611	-0.11434					29	16	2	0	0	0	0.32146	1	1331	1331		1.1933	0.12188	1	40740	+		7720	18699	4158	4158	10225	10225					0.07704018529011591
ERLADHFMQR	10	Unmodified	_ERLADHFMQR_					0	0	0			REV__ENSG00000170604|ENST00000302165|IRF2BP1	REV__ENSG00000170604|ENST00000302165|IRF2BP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8821716308594	3	434.883906	1301.62989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.38	1	112.38	111.88	112.88	0								0	0	0	0.38198	1	29213	29213		0.62683	0.12087	1		+		7721	17588	4159	4159	10226	10226					-0.008861213626232711
ERLADHFMQR	10	Unmodified	_ERLADHFMQR_					0	0	0			REV__ENSG00000170604|ENST00000302165|IRF2BP1	REV__ENSG00000170604|ENST00000302165|IRF2BP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8822937011719	3	434.883906	1301.62989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.99	1	112	111.5	112.5	0.0131								0	0	0	0.38198	1	29155	29155		0.62683	0.12087	1		+		7722	17588	4159	4159	10227	10227					-0.008861213626232711
ERLADHFMQR	10	Unmodified	_ERLADHFMQR_					0	0	0			REV__ENSG00000170604|ENST00000302165|IRF2BP1	REV__ENSG00000170604|ENST00000302165|IRF2BP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8822937011719	3	434.883906	1301.62989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.44	1	113.45	112.95	113.95	0.014824								0	0	0	0.38198	1	29515	29515		0.62683	0.21856	1		+		7723	17588	4159	4159	10228	10228					-0.008861213626232711
ERLDEPHFG	9	Unmodified	_ERLDEPHFG_					0	0	0		nc|ENSG00000163590|Q5SGD2-3|PPM1L;nc|ENSG00000163590|Q5SGD2-2|PPM1L;ENSG00000163590|ENST00000498165|PPM1L	nc|ENSG00000163590|Q5SGD2-3|PPM1L	nc|ENSG00000163590|Q5SGD2-3|PPM1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2766723632812	2	550.261988	1098.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.016	1	79.987	79.487	80.487	-0.028931								0	0	0	0.22065	1	20761	20761		15.847	1.9411	1				7724	12798	4160	4160	10229	10229					-0.035892060845753804
ERLDTADRI	9	Unmodified	_ERLDTADRI_					0	0	0			REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2	REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.78857421875	2	544.78837	1087.56219	0.6215	0.00033859	-0.018309	-9.9747E-06	0.60319	0.00032861	544.7884295460935	16.713	0.60676	16.651	16.442	17.049	-0.062534					41	21	2	0	0	0	0.33911	1	1507	1507		2.9952	0	1	157830	+		7725	16679	4161	4161	10230	10230					0.021907519782416784
ERLMDVMAK	9	Unmodified	_ERLMDVMAK_					0	0	0		ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7696533203125	2	546.780644	1091.54674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.261	1	38.358	37.858	38.858	0.097527								0	0	0	0.22933	1	7952	7952		13.042	1.5478	1				7726	7368	4162	4162	10231	10231					0.004624258651574564
ERLMSKIL	8	Unmodified	_ERLMSKIL_					0	0	0			REV__nc|ENSG00000215864|P0C2Y1|NBPF7P	REV__nc|ENSG00000215864|P0C2Y1|NBPF7P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.9590148925781	2	495.294245	988.573937	0.16821	8.3312E-05	1.6653	0.00082483	1.8335	0.00090815	495.29483856636756	96.071	0.21147	96.071	95.93	96.142	0					24	20	2	0	0	0	0.34272	1	25661	25661		7.9102	0	1	49692	+		7727	23192	4163	4163	10232	10232					0.07919277467874508
ERLMSKIL	8	Unmodified	_ERLMSKIL_					0	0	0			REV__nc|ENSG00000215864|P0C2Y1|NBPF7P	REV__nc|ENSG00000215864|P0C2Y1|NBPF7P	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	495.294245	988.573937	0.28409	0.00014071	3.6518	0.0018087	3.9359	0.0019494	495.2963052030994	96.171	0.23751	96.248	96.086	96.324	0.077415	0.08844	0.0010646	NaN	7.9102	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66913	+		7728	23192	4163	4163							0.07919277467874508
ERLNKTVV	8	Unmodified	_ERLNKTVV_					0	0	0			REV__nc|ENSG00000172456|Q96C11-5|FGGY	REV__nc|ENSG00000172456|Q96C11-5|FGGY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.78192138671875	2	479.787641	957.56073	-0.10788	-5.1759E-05	2.0029	0.00096095	1.895	0.00090919	479.7885859588934	15.162	0.33721	15.162	15.044	15.382	0					26	11	3	0	0	0	0.34198	1	909	909		10.824	0	1	180160	+		7729	23086	4164	4164	10233	10233					0.08025162680155518
ERLQQLDAQS	10	Unmodified	_ERLQQLDAQS_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.3021240234375	2	594.304384	1186.59421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.01	1	104.01	103.51	104.51	-0.0011139								0	0	0	0.37157	1	27651	27651		5.7319	0	1				7730	4093	4165	4165	10234	10234					0.008381196613754582
ERNRGSGSWIR	11	Unmodified	_ERNRGSGSWIR_					0	0	0		ENSG00000099338|ENST00000409235|CATSPERG	ENSG00000099338|ENST00000409235|CATSPERG	ENSG00000099338|ENST00000409235|CATSPERG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.8584289550781	3	439.897203	1316.66978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.388	1	12.32	11.82	12.82	-0.06806								0	0	0	0.38124	1	111	111		1.2148	0.4383	1				7731	1485	4166	4166	10235	10235					0.024111416323194135
ERNWPNFLLTF	11	Unmodified	_ERNWPNFLLTF_					0	0	0			REV__nc|ENSG00000166947|P16452-3|EPB42	REV__nc|ENSG00000166947|P16452-3|EPB42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.8001708984375	3	479.582221	1435.72483	0.32704	0.00015684	-0.27667	-0.00013269	0.050376	2.4159E-05	479.58217827791617	51.188	0.60356	51.235	50.957	51.561	0.046577					51	22	3	0	0	0	0.33207	1	11998	11998		5.5233	5.5233	1	557620	+		7732	17351	4167	4167	10236	10236					0.02440135380220454
ERPEQADVQKL	11	Unmodified	_ERPEQADVQKL_					0	0	0			REV__ENST00000423145.7_3_19:6591036-6591132:-|nuORF	REV__ENST00000423145.7_3_19:6591036-6591132:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.24688720703125	3	438.233369	1311.67828	0.16778	7.3526E-05	1.679	0.00073581	1.8468	0.00080934	438.23470300648887	20.862	0.79813	20.862	20.57	21.368	0					52	27	3	0	0	0	0.44351	1	2637	2637		5.5233	0.12058	1	77814	+		7733	20877	4168	4168	10237	10237					0.034906507582718405
ERPQIPFVW	9	Unmodified	_ERPQIPFVW_					0	0	0		nc|ENSG00000135773|O14815-2|CAPN9;ENSG00000135773|ENST00000271971|CAPN9	nc|ENSG00000135773|O14815-2|CAPN9	nc|ENSG00000135773|O14815-2|CAPN9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8131103515625	2	586.316566	1170.61858	-0.063933	-3.7485E-05	-2.0393	-0.0011957	-2.1032	-0.0012332	586.3152362477005	100.07	0.1707	100.07	99.933	100.1	0					35	22	2	0	0	0	0.26031	1	26733	26733		1.4819	0.15237	1	107730			7734	3902	4169	4169	10238	10238					0.04009424605555978
ERPRKLWTL	9	Unmodified	_ERPRKLWTL_					0	0	0			REV__ENST00000478234.5_1_5:176730227-176730383:-|nuORF	REV__ENST00000478234.5_1_5:176730227-176730383:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	400.2405090332031	3	400.240018	1197.69823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.387	1	96.387	95.887	96.887	0								0	0	0	0.26629	1	25752	25752		0.96228	0	1		+		7735	20608	4170	4170	10239	10239					0.1072849127954214
ERQGQRKLC	9	Unmodified	_ERQGQRKLC_					0	0	0			REV__ENSG00000178974|ENST00000313833|FBXO34	REV__ENSG00000178974|ENST00000313833|FBXO34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.824951171875	2	559.298381	1116.58221	0.15109	8.4505E-05	-3.4316	-0.0019193	-3.2805	-0.0018348	559.296620631921	18.264	0.36737	18.146	17.957	18.325	-0.11739					15	12	2	0	0	0	0.25706	1	1917	1917		6.7232	0.99131	1	33490	+		7736	18052	4171	4171	10240	10240					0.02858224437204626
ERQKRVYWT	9	Unmodified	_ERQKRVYWT_					0	0	0			REV__nc|ENSG00000275410|P35680-3|HNF1B	REV__nc|ENSG00000275410|P35680-3|HNF1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2405700683594	3	422.563161	1264.66765	-0.17289	-7.3055E-05	-1.2778	-0.00053996	-1.4507	-0.00061302	422.5620539160109	26.319	0.74664	26.319	26.042	26.789	0					46	25	3	0	0	0	0.25779	1	4276	4276		3.8763	0	1	120750	+		7737	19331	4172	4172	10241	10241					0.04590712894491844
ERQLKGKEH	9	Unmodified	_ERQLKGKEH_					0	0	0			REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8128051757812	2	562.812179	1123.60981	0.177	9.9616E-05	0.94203	0.00053019	1.119	0.0006298	562.8129747465075	93.294	0.57419	93.294	92.941	93.515	0					105	50	3	0	0	0	0.3208	1	24862	24862		5.7319	1.7875	1	141490	+		7738	23032	4173	4173	10242	10242					0.052944509690860286
ERQLKGKEH	9	Unmodified	_ERQLKGKEH_					0	0	0			REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000151914|Q03001-3|DST	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	562.812179	1123.60981	0.32459	0.00018268	0.8244	0.00046398	1.149	0.00064666	562.8129657007327	93.205	0.56425	93.292	92.91	93.474	0.08667	0.029814	2.7294E-05	NaN	5.7319	97	53	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186200	+		7739	23032	4173	4173							0.052944509690860286
ERQQWTQL	8	Unmodified	_ERQQWTQL_					0	0	0			REV__ENSG00000197948|ENST00000435817|FCHSD1	REV__ENSG00000197948|ENST00000435817|FCHSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2937622070312	2	544.777805	1087.54106	0.28939	0.00015765	1.9048	0.0010377	2.1942	0.0011954	545.7805732738898	23.532	0.57918	23.532	23.308	23.887	0					56	19	4	0	0	0	0.3415	1	3453	3453		13.042	2.9685	1	88065	+		7740	18782	4174	4174	10243	10243					0.0007878666938267997
ERQQWTQL	8	Unmodified	_ERQQWTQL_					0	0	0			REV__ENSG00000197948|ENST00000435817|FCHSD1	REV__ENSG00000197948|ENST00000435817|FCHSD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.777805	1087.54106	0.50007	0.00027243	4.0333	0.0021972	4.5334	0.0024697	544.7798335524546	23.724	0.68761	23.651	23.368	24.055	-0.072559	0.059911	0.0015243	NaN	13.042	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61046	+		7741	18782	4174	4174							0.0007878666938267997
ERQRYRRLLQR	11	Unmodified	_ERQRYRRLLQR_					0	0	0			REV__ENSG00000261150|ENST00000615648|EPPK1	REV__ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.31005859375	3	525.309718	1572.90732	0.35525	0.00018662	0.059549	3.1282E-05	0.4148	0.0002179	525.3096652742355	95.861	2.1594	95.938	94.551	96.71	0.077408					569	196	4	0	0	0	0.48247	1	25473	25473		0.40827	0.041592	1	1130000	+		7742	19281	4175	4175	10244	10244					0.14378707565538207
ERRKKVDEDE	10	Unmodified	_ERRKKVDEDE_					0	0	0			REV__ENST00000537303.5_1_19:15472501-15484105:-|nuORF	REV__ENST00000537303.5_1_19:15472501-15484105:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.57110595703125	3	435.224874	1302.65279	-0.2887	-0.00012565	0.78248	0.00034055	0.49378	0.00021491	435.2253960810099	19.14	0.94983	19.14	18.79	19.739	0					43	33	3	0	0	0	0.32137	1	2164	2164		1.7423	0	1	40695	+		7743	14438	4176	4176	10245	10245					0.01357176235865154
ERRQWPSKK	9	Unmodified	_ERRQWPSKK_					0	0	0			REV__ENSG00000161682|ENST00000293443|FAM171A2	REV__ENSG00000161682|ENST00000293443|FAM171A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.52532958984375	3	405.563273	1213.66799	-0.2915	-0.00011822	0.85751	0.00034777	0.56601	0.00022955	405.56356513666873	18.083	0.5693	17.966	17.726	18.295	-0.11739					33	19	2	0	0	0	0.25756	1	1925	1925		7.1017	2.0542	1	48913	+		7744	16949	4177	4177	10246	10246					0.06970132614355862
ERRQWPSKK	9	Unmodified	_ERRQWPSKK_					0	0	0			REV__ENSG00000161682|ENST00000293443|FAM171A2	REV__ENSG00000161682|ENST00000293443|FAM171A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	405.563273	1213.66799	-0.17647	-7.1568E-05	0.74642	0.00030272	0.56996	0.00023115	405.5635381983942	17.949	0.52837	17.949	17.66	18.188	0	-0.060848	-9.5414E-05	NaN	7.1017	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50089	+		7745	16949	4177	4177							0.06970132614355862
ERRQWPSKK	9	Unmodified	_ERRQWPSKK_					0	0	0			REV__ENSG00000161682|ENST00000293443|FAM171A2	REV__ENSG00000161682|ENST00000293443|FAM171A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.563273	1213.66799	-0.29692	-0.00012042	0.87043	0.00035301	0.57351	0.00023259	405.56352794087024	18.173	0.54656	18.115	17.794	18.341	-0.058174	0.10514	5.546E-05	NaN	7.1017	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51347	+		7746	16949	4177	4177							0.06970132614355862
ERRRELENK	9	Unmodified	_ERRRELENK_					0	0	0		ENST00000413731.1_1_17:16649540-16650074:-|nuORF	ENST00000413731.1_1_17:16649540-16650074:-|nuORF	ENST00000413731.1_1_17:16649540-16650074:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.1863098144531	3	410.56182	1228.66363	-0.36637	-0.00015042	-2.2853	-0.00093827	-2.6517	-0.0010887	410.56069596047723	14.226	0.36233	14.226	14.086	14.448	0					28	12	3	0	0	0	0.25992	1	702	702		4.5289	0.94181	1	68841			7747	10293	4178	4178	10247	10247					0.058446234007988096
ERRRELENK	9	Unmodified	_ERRRELENK_					0	0	0		ENST00000413731.1_1_17:16649540-16650074:-|nuORF	ENST00000413731.1_1_17:16649540-16650074:-|nuORF	ENST00000413731.1_1_17:16649540-16650074:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	410.56182	1228.66363	-0.18748	-7.6973E-05	-2.189	-0.00089871	-2.3765	-0.00097568	410.5606840521499	14.307	0.40496	14.202	14.049	14.454	-0.10466	-0.02113	0.00056265	NaN	4.5289	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88984			7748	10293	4178	4178							0.058446234007988096
ERRRELENK	9	Unmodified	_ERRRELENK_					0	0	0		ENST00000413731.1_1_17:16649540-16650074:-|nuORF	ENST00000413731.1_1_17:16649540-16650074:-|nuORF	ENST00000413731.1_1_17:16649540-16650074:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	410.56182	1228.66363	-0.22638	-9.2942E-05	-2.8388	-0.0011655	-3.0651	-0.0012584	410.5605701507438	14.307	0.35921	14.241	14.124	14.483	-0.066068	0.018054	-0.00023768	NaN	4.5289	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54312			7749	10293	4178	4178							0.058446234007988096
ERRRWTQLRAS	11	Unmodified	_ERRRWTQLRAS_					0	0	0			REV__ENST00000357736.8_1_17:79877633-79877984:-|nuORF	REV__ENST00000357736.8_1_17:79877633-79877984:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.958984375	3	486.939402	1457.79638	0.26074	0.00012696	-1.9438	-0.00094652	-1.6831	-0.00081956	486.93830202650594	91.996	0.52787	92.086	91.924	92.452	0.090668					55	35	2	0	0	0	0.33146	1	24506	24506		6.6235	2.5068	1	134400	+		7750	20223	4179	4179	10248	10248					0.0857906785747673
ERSIKGHFW	9	Unmodified	_ERSIKGHFW_					0	0	0			REV__nc|ENSG00000165025|P43405-2|SYK	REV__nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3038940429688	2	580.30399	1158.59343	0.31722	0.00018408	0.17474	0.0001014	0.49196	0.00028548	580.3039808876694	62.281	0.66675	62.281	62.022	62.689	0					83	24	4	0	0	0	0.2719	1	15394	15394		13.042	0.86772	1	847210	+		7751	17200	4180	4180	10249	10249					0.020473698029945808
ERSIKGHFW	9	Unmodified	_ERSIKGHFW_					0	0	0			REV__nc|ENSG00000165025|P43405-2|SYK	REV__nc|ENSG00000165025|P43405-2|SYK	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	580.30399	1158.59343	0.31722	0.00018408	0.17474	0.0001014	0.49196	0.00028548	580.3039808876694	62.281	0.66675	62.281	62.022	62.689	0	0.019742	-9.293E-06	NaN	13.042	83	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	847210	+		7752	17200	4180	4180							0.020473698029945808
ERSKKAKKMI	10	Unmodified	_ERSKKAKKMI_					0	0	0		ENSG00000164346|ENST00000610426|NSA2;ENST00000514918.5_1_5:74063185-74065204:+|nuORF;ENST00000513356.1_1_5:74063185-74067331:+|nuORF	ENSG00000164346|ENST00000610426|NSA2	ENSG00000164346|ENST00000610426|NSA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5530090332031	3	406.916547	1217.72781	0.050328	2.0479E-05	-1.5649	-0.00063677	-1.5145	-0.00061629	407.2507744258584	17.034	0.39561	16.973	16.756	17.152	-0.060429					19	14	2	0	0	0	0.32068	1	1444	1444		3.5871	0	1	25918			7753	5837	4181	4181	10250	10250					0.1276568723337732
ERSPSLYHL	9	Unmodified	_ERSPSLYHL_					0	0	0			REV__ENSG00000181562|ENST00000326842|EDDM3A	REV__ENSG00000181562|ENST00000326842|EDDM3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.7741088867188	2	551.288005	1100.56146	-0.35384	-0.00019507	-2.6201	-0.0014445	-2.974	-0.0016395	551.2865379359954	34.697	0.64215	34.774	34.39	35.033	0.077377					31	22	2	0	0	0	0.25323	1	6922	6922		10.074	0	1	165660	+		7754	18155	4182	4182	10251	10251					0.015199573291738488
ERTHSETICN	10	Unmodified	_ERTHSETICN_					0	0	0			REV__ENST00000606455.5_1_2:66670102-66794607:+|nuORF	REV__ENST00000606455.5_1_2:66670102-66794607:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7898559570312	2	595.266944	1188.51934	0.41011	0.00024412	0.74948	0.00044614	1.1596	0.00069027	595.2672983686501	42.428	0.71345	42.513	42.093	42.806	0.085201					44	25	3	0	0	0	0.30555	1	9193	9193		20.415	3.3016	1	460700	+		7755	22661	4183	4183	10252	10252					-0.06738386141455521
ERTRLLVD	8	Unmodified	_ERTRLLVD_					0	0	0			REV__ENST00000557829.1_1_14:24545691-24546719:+|nuORF	REV__ENST00000557829.1_1_14:24545691-24546719:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.290771484375	2	501.290548	1000.56654	0.4501	0.00022563	0.46359	0.00023239	0.91369	0.00045802	501.2906008668285	79.429	0.95152	79.429	79.057	80.009	0					118	37	4	0	0	0	0.43758	1	20641	20641		10.074	0	1	1065500	+		7756	22273	4184	4184	10253	10253					0.06628261191804086
ERTRLLVD	8	Unmodified	_ERTRLLVD_					0	0	0			REV__ENST00000557829.1_1_14:24545691-24546719:+|nuORF	REV__ENST00000557829.1_1_14:24545691-24546719:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	501.290548	1000.56654	0.44624	0.00022369	0.3542	0.00017756	0.80044	0.00040125	501.2905856336989	79.383	0.98359	79.445	79.068	80.051	0.061417	0.025013	-1.0098E-05	NaN	10.074	127	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1401000	+		7757	22273	4184	4184							0.06628261191804086
ERTRLLVD	8	Unmodified	_ERTRLLVD_					0	0	0			REV__ENST00000557829.1_1_14:24545691-24546719:+|nuORF	REV__ENST00000557829.1_1_14:24545691-24546719:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	501.290548	1000.56654	0.48891	0.00024508	0.2773	0.00013901	0.76621	0.00038409	501.29051991408664	79.415	1.116	79.386	79.024	80.14	-0.028931	-0.033797	-8.7201E-05	NaN	10.074	132	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1090300	+		7758	22273	4184	4184							0.06628261191804086
ERTYAFLVN	9	Unmodified	_ERTYAFLVN_					0	0	0		nc|ENSG00000102802|Q5VYS4-2|MEDAG;ENSG00000102802|ENST00000380482|MEDAG	nc|ENSG00000102802|Q5VYS4-2|MEDAG	nc|ENSG00000102802|Q5VYS4-2|MEDAG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.292724609375	2	556.790381	1111.56621	0.042177	2.3484E-05	1.8535	0.001032	1.8957	0.0010555	557.2932316283296	25.695	0.60388	25.655	25.266	25.87	-0.039385					44	20	3	0	0	0	0.31763	1	4152	4152		6.2058	1.3088	1	169520			7759	1784	4185	4185	10254	10254					0.014888414719507637
ERWAEWVRL	9	Unmodified	_ERWAEWVRL_					0	0	0			REV__TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	REV__TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.5820007324219	3	415.556007	1243.64619	-0.24527	-0.00010193	0.14009	5.8217E-05	-0.10518	-4.3708E-05	415.5561770200424	23.186	0.60879	23.186	22.904	23.513	0					50	20	4	0	0	0	0.25992	1	3346	3346		4.5289	0	1	202580	+		7760	16169	4186	4186	10255	10255					0.034113278657969204
ERYEVVIQ	8	Unmodified	_ERYEVVIQ_					0	0	0		ENSG00000149654|ENST00000537909|CDH22	ENSG00000149654|ENST00000537909|CDH22	ENSG00000149654|ENST00000537909|CDH22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2953491210938	2	518.277106	1034.53966	0.431	0.00022338	1.1977	0.00062073	1.6287	0.00084411	518.2781221739299	40.711	0.28728	40.803	40.718	41.005	0.09267					11	10	2	0	0	0	0.095164	1	8759	8759		61.357	9.7277	1	170180			7761	4887	4187	4187	10256	10256					0.023771525806068894
ERYEVVIQ	8	Unmodified	_ERYEVVIQ_					0	0	0		ENSG00000149654|ENST00000537909|CDH22	ENSG00000149654|ENST00000537909|CDH22	ENSG00000149654|ENST00000537909|CDH22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2953491210938	2	518.277106	1034.53966	0.42505	0.00022029	1.2045	0.00062428	1.6296	0.00084458	518.2768630235088	40.194	0.98999	40.293	39.922	40.912	0.099407					102	35	4	0	0	0	0.11736	1	8719	8719		57.471	13.613	1	2760200			7762	4887	4187	4187	10257	10257					0.023771525806068894
ERYPPNTG	8	Unmodified	_ERYPPNTG_					0	0	0			REV__nc|ENSG00000038274|Q9NZL9-3|MAT2B	REV__nc|ENSG00000038274|Q9NZL9-3|MAT2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2267150878906	2	467.224874	932.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.163	1	98.225	97.725	98.725	0.061516								0	0	0	0.37277	1	26269	26269		4.3292	0.38484	1		+		7763	13513	4188	4188	10258	10258					-0.03372549176094708
ERYWHLLYY	9	Unmodified	_ERYWHLLYY_					0	0	0			REV__ENSG00000139547|ENST00000398138|RDH16	REV__ENSG00000139547|ENST00000398138|RDH16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7510681152344	3	448.224146	1341.65061	0.44604	0.00019993	0.78585	0.00035224	1.2319	0.00055216	448.22450703942695	20.7	0.56796	20.59	20.296	20.864	-0.11003					41	19	3	0	0	0	0.26228	1	2662	2662		1.1933	0	1	158600	+		7764	13480	4189	4189	10259	10259					-0.006552077112701227
ESAAPRVDPA	10	Unmodified	_ESAAPRVDPA_					0	0	0			REV__nc|ENSG00000157601|P20591-2|MX1	REV__nc|ENSG00000157601|P20591-2|MX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7747802734375	2	506.756538	1011.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.501	1	17.44	16.94	17.94	-0.060429								0	0	0	0.37044	1	1648	1648		6.2058	1.4498	1		+		7765	23041	4190	4190	10260	10260					-0.006766084588662125
ESAARDDAVF	10	Unmodified	_ESAARDDAVF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7389526367188	2	540.751453	1079.48835	0.47454	0.00025661	-1.8905	-0.0010223	-1.416	-0.00076569	540.7506342066365	71.281	0.25496	71.341	71.179	71.434	0.060783					12	8	2	0	0	0	0.27248	1	18086	18086		23.79	0.64136	1	182720			7766	2429	4191	4191	10261	10261					-0.04821216184109289
ESAARDDAVF	10	Unmodified	_ESAARDDAVF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7385864257812	2	540.751453	1079.48835	0.64128	0.00034677	-2.6633	-0.0014402	-2.022	-0.0010934	540.7500354324294	71.431	0.3783	71.404	71.128	71.506	-0.027275					17	13	2	0	0	0	0.27248	1	18119	18119		23.79	4.3508	1	162110			7767	2429	4191	4191	10262	10262					-0.04821216184109289
ESAFRICRTC	10	Unmodified	_ESAFRICRTC_					0	0	0			REV__ENST00000457011.5_1_2:207011800-207012305:-|nuORF	REV__ENST00000457011.5_1_2:207011800-207012305:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7908325195312	2	593.2788	1184.54305	0.36038	0.0002138	-1.2033	-0.0007139	-0.84294	-0.0005001	593.2783154880317	37.813	0.55433	37.91	37.712	38.266	0.097527					41	19	3	0	0	0	0.38233	1	7909	7909		6.7232	0	1	340750	+		7768	13468	4192	4192	10263	10263					-0.04184243908684948
ESARAKKI	8	Unmodified	_ESARAKKI_					0	0	0			REV__nc|ENSG00000178053|P58340-3|MLF1	REV__nc|ENSG00000178053|P58340-3|MLF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2299499511719	2	451.774534	901.534515	0.017023	7.6905E-06	-0.17294	-7.813E-05	-0.15592	-7.0439E-05	451.77437991160326	18.627	0.31919	18.627	18.419	18.738	0					14	10	2	0	0	0	0.34353	1	2012	2012		4.756	4.756	1	35930	+		7769	23107	4193	4193	10264	10264					0.07980893508647569
ESARAKKI	8	Unmodified	_ESARAKKI_					0	0	0			REV__nc|ENSG00000178053|P58340-3|MLF1	REV__nc|ENSG00000178053|P58340-3|MLF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	451.774534	901.534515	-0.011366	-5.1348E-06	-0.48655	-0.00021981	-0.49792	-0.00022495	451.7741238235673	18.706	0.25919	18.588	18.387	18.647	-0.11739	-0.019537	-0.00013683	NaN	8.5933	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25335	+		7770	23107	4193	4193							0.07980893508647569
ESAVSRTWR	9	Unmodified	_ESAVSRTWR_					0	0	0			REV__ENST00000415461.2_1_11:70256025-70261778:+|nuORF	REV__ENST00000415461.2_1_11:70256025-70261778:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.808837890625	2	546.283254	1090.55196	0.12646	6.9085E-05	-1.5937	-0.0008706	-1.4672	-0.00080151	546.2802772293118	13.88	0.42423	13.88	13.714	14.138	0					25	14	3	0	0	0	0.17611	1	512	512		34.102	1.3168	1	35351	+		7771	20809	4194	4194	10265	10265					0.010301890436494432
ESDGPFLAK	9	Unmodified	_ESDGPFLAK_					0	0	0			REV__ENSG00000250506|ENST00000448471|CDK3	REV__ENSG00000250506|ENST00000448471|CDK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7762756347656	2	482.242732	962.470912	-0.066015	-3.1835E-05	-2.6204	-0.0012637	-2.6864	-0.0012955	482.24181541696896	15.239	0.93623	15.239	15.044	15.981	0					43	32	3	0	0	0	0.23784	1	957	957		19.257	2.3147	1	84524	+		7772	19217	4195	4195	10266	10266					-0.011825117191051504
ESDGPFLAK	9	Unmodified	_ESDGPFLAK_					0	0	0			REV__ENSG00000250506|ENST00000448471|CDK3	REV__ENSG00000250506|ENST00000448471|CDK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7763366699219	2	482.242732	962.470912	0.029044	1.4006E-05	-1.9665	-0.00094831	-1.9374	-0.0009343	482.2418355631576	15.369	0.60361	15.259	15.093	15.696	-0.10982					35	20	2	0	0	0	0.24848	1	990	990		13.906	1.3745	1	86487	+		7773	19217	4195	4195	10267	10267					-0.011825117191051504
ESDRFLHIMQ	10	Unmodified	_ESDRFLHIMQ_					0	0	0		ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3113403320312	2	638.311155	1274.60776	0.71842	0.00045857	0.055218	3.5246E-05	0.77363	0.00049382	638.3109664184252	72.861	0.49905	72.832	72.627	73.126	-0.029305					26	17	3	0	0	0	0.3258	1	18595	18595		17.113	0	1	174410			7774	3459	4196	4196	10268	10268					-0.0185634583101546
ESEAWEASL	9	Unmodified	_ESEAWEASL_					0	0	0		ENSG00000235961|ENST00000421798|PNMA6A	ENSG00000235961|ENST00000421798|PNMA6A	ENSG00000235961|ENST00000421798|PNMA6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.226806640625	2	511.227279	1020.44001	-0.056833	-2.9055E-05	-0.66588	-0.00034042	-0.72272	-0.00036947	511.2270307918506	18.358	1.6114	18.3	17.902	19.514	-0.058174					168	56	5	0	0	0	0.079066	4	1872	1872;1915;1958;2004		42.095	42.095	1	3944000			7775	8498	4197	4197	10269;10270;10271;10272	10269					-0.06939709823996054
ESEAWEASL	9	Unmodified	_ESEAWEASL_					0	0	0		ENSG00000235961|ENST00000421798|PNMA6A	ENSG00000235961|ENST00000421798|PNMA6A	ENSG00000235961|ENST00000421798|PNMA6A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	511.227279	1020.44001	0.19418	9.9271E-05	-0.91453	-0.00046753	-0.72035	-0.00036826	511.226886215748	18.185	1.5726	18.185	17.802	19.375	0	-0.04507	-0.00011042	NaN	42.095	156	54	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3324500			7776	8498	4197	4197							-0.06939709823996054
ESEAWEASL	9	Unmodified	_ESEAWEASL_					0	0	0		ENSG00000235961|ENST00000421798|PNMA6A	ENSG00000235961|ENST00000421798|PNMA6A	ENSG00000235961|ENST00000421798|PNMA6A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	511.227279	1020.44001	0.076805	3.9265E-05	-0.82181	-0.00042013	-0.745	-0.00038087	511.22693104329954	18.322	1.4198	18.205	17.812	19.232	-0.11739	-0.025072	-1.5611E-05	NaN	42.095	169	49	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3523800			7777	8498	4197	4197							-0.06939709823996054
ESEECVEYQK	10	Unmodified	_ESEECVEYQK_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.5628967285156	3	415.176421	1242.50743	-0.030712	-1.2751E-05	2.1903	0.00090938	2.1596	0.00089663	415.5118374261307	15.574	0.27672	15.51	15.36	15.636	-0.064414					17	8	3	0	0	0	0.32009	1	1103	1103		1.9064	0.57673	1	28806			7778	4227	4198	4198	10273	10273					-0.1041204767536783
ESEECVEYQK	10	Unmodified	_ESEECVEYQK_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	415.176421	1242.50743	0.064509	2.6782E-05	2.1339	0.00088595	2.1984	0.00091273	415.5117680649442	15.644	0.26001	15.535	15.38	15.64	-0.10981	0.023434	-6.0513E-05	NaN	1.9064	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16396			7779	4227	4198	4198							-0.1041204767536783
ESEEHIEL	8	Unmodified	_ESEEHIEL_					0	0	0		ENST00000505896.5_1_5:49695109-49707239:-|nuORF;nc|ENSG00000170571|Q6PCB8-2|EMB;ENSG00000170571|ENST00000303221|EMB	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.2872314453125	2	493.227279	984.440005	0.1873	9.238E-05	-0.11836	-5.8377E-05	0.068939	3.4003E-05	493.22713158060475	23.14	0.45032	23.052	22.82	23.27	-0.087608					25	15	2	0	0	0	0.344	1	3302	3302		2.5775	0.27475	1	61602			7780	6465	4199	4199	10274	10274					-0.052837098239933766
ESFAPTSYTF	10	Unmodified	_ESFAPTSYTF_					0	0	0			REV__nc|ENSG00000102755|P17948-7|FLT1	REV__nc|ENSG00000102755|P17948-7|FLT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.819091796875	2	575.258579	1148.50261	0.21055	0.00012112	-0.24863	-0.00014303	-0.038082	-2.1907E-05	575.2581077086995	67.515	1.1899	67.515	66.688	67.878	0					81	41	3	0	0	0	0.2266	1	16911	16911		41.84	3.6641	1	356280	+		7781	14330	4200	4200	10275	10275					-0.06570563755826697
ESFAPTSYTF	10	Unmodified	_ESFAPTSYTF_					0	0	0			REV__nc|ENSG00000102755|P17948-7|FLT1	REV__nc|ENSG00000102755|P17948-7|FLT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.2587890625	2	575.258579	1148.50261	0.39984	0.00023001	0.0066778	3.8415E-06	0.40652	0.00023385	575.2584051594968	65.692	1.6411	65.781	65.216	66.857	0.088882					133	59	3	0	0	0	0.023345	1	16480	16480		68.081	5.508	1	538940	+		7782	14330	4200	4200	10276	10276					-0.06570563755826697
ESFAPTSYTF	10	Unmodified	_ESFAPTSYTF_					0	0	0			REV__nc|ENSG00000102755|P17948-7|FLT1	REV__nc|ENSG00000102755|P17948-7|FLT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.8192138671875	2	575.258579	1148.50261	0.34243	0.00019698	0.033082	1.9031E-05	0.37551	0.00021601	575.2583027594752	67.362	1.0698	67.44	66.732	67.802	0.078041					86	37	3	0	0	0	0.255	1	16840	16840		34.402	3.1334	1	313040	+		7783	14330	4200	4200	10277	10277					-0.06570563755826697
ESFAPTSYTF	10	Unmodified	_ESFAPTSYTF_					0	0	0			REV__nc|ENSG00000102755|P17948-7|FLT1	REV__nc|ENSG00000102755|P17948-7|FLT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.2586059570312	2	575.258579	1148.50261	0.32221	0.00018535	-0.0059242	-3.408E-06	0.31628	0.00018194	575.2584690694878	65.875	1.669	65.863	65.257	66.926	-0.011337					135	60	3	0	0	0	0.023345	1	16500	16500		68.081	5.508	1	777610	+		7784	14330	4200	4200	10278	10278					-0.06570563755826697
ESFAPTSYTF	10	Unmodified	_ESFAPTSYTF_					0	0	0			REV__nc|ENSG00000102755|P17948-7|FLT1	REV__nc|ENSG00000102755|P17948-7|FLT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.2899169921875	2	575.258579	1148.50261	0.32221	0.00018535	-0.0059242	-3.408E-06	0.31628	0.00018194	575.2584690694878	65.875	1.669	65.863	65.257	66.926	-0.011337					135	60	3	0	0	0	0.10907	1	16471	16471		68.081	1.624	1	777610	+		7785	14330	4200	4200	10279	10279					-0.06570563755826697
ESFAPTSYTF	10	Unmodified	_ESFAPTSYTF_					0	0	0			REV__nc|ENSG00000102755|P17948-7|FLT1	REV__nc|ENSG00000102755|P17948-7|FLT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.8189086914062	2	575.258579	1148.50261	0.10752	6.1852E-05	0.13483	7.7565E-05	0.24236	0.00013942	575.2583218644546	67.471	1.1515	67.455	66.687	67.838	-0.016296					83	40	3	0	0	0	0.15562	1	16964	16964		58.679	4.846	1	376890	+		7786	14330	4200	4200	10280	10280					-0.06570563755826697
ESFKKVKLL	9	Unmodified	_ESFKKVKLL_					0	0	0			REV__ENSG00000132612|ENST00000254950|VPS4A	REV__ENSG00000132612|ENST00000254950|VPS4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.8089599609375	2	546.344792	1090.67503	0.134	7.3209E-05	-0.73071	-0.00039922	-0.59671	-0.00032601	546.344244890714	14.107	0.63088	14.107	13.847	14.478	0					45	21	3	0	0	0	0.25879	1	551	551		4.756	3.1034	1	220750	+		7787	15582	4201	4201	10281	10281					0.13332052442228814
ESFKKVKLL	9	Unmodified	_ESFKKVKLL_					0	0	0			REV__ENSG00000132612|ENST00000254950|VPS4A	REV__ENSG00000132612|ENST00000254950|VPS4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.808837890625	2	546.344792	1090.67503	0.23366	0.00012766	-0.49561	-0.00027077	-0.26195	-0.00014311	546.3443007898003	14.182	0.69597	14.077	13.845	14.54	-0.10466					48	23	3	0	0	0	0.25879	1	585	585		4.756	2.6963	1	226580	+		7788	15582	4201	4201	10282	10282					0.13332052442228814
ESGQPNMASF	10	Unmodified	_ESGQPNMASF_					0	0	0			REV__ENSG00000117707|ENST00000366958|PROX1	REV__ENSG00000117707|ENST00000366958|PROX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2269287109375	2	534.226756	1066.43896	0.31136	0.00016634	0.12347	6.5963E-05	0.43483	0.0002323	534.2267332646248	28.462	0.88428	28.462	28.121	29.006	0					55	30	2	0	0	0	0.26265	2	5050	5000;5050		24.991	5.734	1	319640	+		7789	14988	4202	4202	10283;10284	10284					-0.09160247464546956
ESGQPNMASF	10	Unmodified	_ESGQPNMASF_					0	0	0			REV__ENSG00000117707|ENST00000366958|PROX1	REV__ENSG00000117707|ENST00000366958|PROX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2268676757812	2	534.226756	1066.43896	0.1827	9.7605E-05	0.047238	2.5236E-05	0.22994	0.00012284	534.2267176748132	28.56	1.007	28.556	28.167	29.174	-0.0042572					67	35	3	0	0	0	0.25219	1	5005	5005		26.268	2.4784	1	346420	+		7790	14988	4202	4202	10285	10285					-0.09160247464546956
ESGQPNMASF	10	Unmodified	_ESGQPNMASF_					0	0	0			REV__ENSG00000117707|ENST00000366958|PROX1	REV__ENSG00000117707|ENST00000366958|PROX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2272338867188	2	534.226756	1066.43896	0.20618	0.00011015	0.23391	0.00012496	0.44009	0.00023511	534.2268323152366	28.626	1.0751	28.627	28.104	29.179	0.0004673					74	38	3	0	0	0	0.19885	3	4992	4941;4992;5041		32.786	2.9451	1	404060	+		7791	14988	4202	4202	10286;10287;10288	10287					-0.09160247464546956
ESGVKVWHL	9	Unmodified	_ESGVKVWHL_					0	0	0		ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3063354492188	2	527.787641	1053.56073	0.57067	0.00030119	-0.7995	-0.00042197	-0.22883	-0.00012077	527.7871949150575	21.521	0.36434	21.42	21.244	21.608	-0.10034					19	12	2	0	0	0	0.25988	1	2904	2904		3.9444	1.3669	1	44170			7792	1063	4203	4203	10289	10289					0.03609162680118061
ESHCATCSE	9	Unmodified	_ESHCATCSE_					0	0	0		ENSG00000161996|ENST00000293879|WDR90;nc|ENSG00000161996|Q96KV7-10|WDR90;ENST00000553080.1_1_16:715570-716730:+|nuORF;nc|ENSG00000161996|Q96KV7-7|WDR90;ENST00000547407.5_1_16:712941-717586:+|nuORF;ENST00000549024.5_1_16:711101-717586:+|nuORF	ENSG00000161996|ENST00000293879|WDR90	ENSG00000161996|ENST00000293879|WDR90	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.66790771484375	2	483.668217	965.321881	-0.34294	-0.00016587	-0.092081	-4.4537E-05	-0.43502	-0.0002104	483.6687314469908	34.461	2.5348	34.461	32.985	35.52	0					172	91	3	0	0	0	0.34536	1	6903	6903		2.0598	0	1	324410			7793	5540	4204	4204	10290	10290					-0.1621672867581765
ESIDLKQFFD	10	Unmodified	_ESIDLKQFFD_					0	0	0		RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant;nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;RALGAPA1|p.E1734Rfs*4|1|0.27|ENSG00000174373|chr14:35627229-35627230|-/T|frameshift_variant;ENSG00000174373|ENST00000680220|RALGAPA1	RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant	RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.7632446289062	2	621.306061	1240.59757	0.25053	0.00015566	-0.59766	-0.00037133	-0.34713	-0.00021568	621.3056254464263	57.111	0.24756	57.092	56.92	57.168	-0.019081					14	8	2	0	0	0	0.31691	1	13708	13708		9.3831	0.63772	1	140660			7794	6790	4205	4205	10291	10291					-0.013106302846153994
ESIIFIEFFA	10	Unmodified	_ESIIFIEFFA_					0	0	0			REV__ENSG00000150261|ENST00000279783|OR8K1	REV__ENSG00000150261|ENST00000279783|OR8K1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.84765625	2	608.31844	1214.62233	0.50377	0.00030645	-0.97144	-0.00059094	-0.46767	-0.00028449	608.3177759061198	82.209	1.056	82.209	81.894	82.95	0					67	38	3	0	0	0	0.31847	1	21498	21498		6.7232	0	1	281710	+		7795	16490	4206	4206	10292	10292					0.02360049588764923
ESIIFIEFFA	10	Unmodified	_ESIIFIEFFA_					0	0	0			REV__ENSG00000150261|ENST00000279783|OR8K1	REV__ENSG00000150261|ENST00000279783|OR8K1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.847412109375	2	608.31844	1214.62233	0.23496	0.00014293	-1.735	-0.0010554	-1.5	-0.0009125	608.3175229916164	81.882	0.51994	81.951	81.566	82.086	0.068993					30	22	2	0	0	0	0.31847	1	21344	21344		6.7232	3.4419	1	134780	+		7796	16490	4206	4206	10293	10293					0.02360049588764923
ESISLEHEM	9	Unmodified	_ESISLEHEM_					0	0	0			REV__ENSG00000176809|ENST00000584306|LRRC37A3	REV__ENSG00000176809|ENST00000584306|LRRC37A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2679443359375	2	537.742239	1073.46993	0.62492	0.00033604	-3.3625	-0.0018082	-2.7376	-0.0014721	537.7401670732081	51.334	0.45251	51.334	51.139	51.592	0					24	16	2	0	0	0	0.24311	1	12027	12027		16.942	1.0951	1	292530	+		7797	17946	4207	4207	10294	10294					-0.06387094150318262
ESIVYRSEL	9	Unmodified	_ESIVYRSEL_					0	0	0			REV__nc|ENSG00000047849|P27816-3|MAP4	REV__nc|ENSG00000047849|P27816-3|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3013305664062	2	548.287671	1094.56079	-0.63581	-0.00034861	0.71127	0.00038998	0.075461	4.1374E-05	548.2880011691623	34.508	0.48824	34.583	34.326	34.814	0.075306					38	17	3	0	0	0	0.25314	1	6800	6800		15.847	1.9411	1	268100	+		7798	22883	4208	4208	10295	10295					0.017291178894765835
ESIWTCQKRS	10	Unmodified	_ESIWTCQKRS_					0	0	0		ENST00000580671.1_1_17:71184016-71184142:+|nuORF	ENST00000580671.1_1_17:71184016-71184142:+|nuORF	ENST00000580671.1_1_17:71184016-71184142:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.8983154296875	3	413.204645	1236.59211	0.048405	2.0001E-05	-0.77427	-0.00031993	-0.72587	-0.00029993	413.5385886737316	15.896	0.32187	15.784	15.546	15.868	-0.1121					19	10	2	0	0	0	0.32033	1	1161	1161		1.7423	0.41263	1	22797			7799	12076	4209	4209	10296	10296					-0.016726323480952487
ESKAIKNLLK	10	Unmodified	_ESKAIKNLLK_					0	0	0		ENSG00000169245|ENST00000306602|CXCL10	ENSG00000169245|ENST00000306602|CXCL10	ENSG00000169245|ENST00000306602|CXCL10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3402709960938	2	572.358431	1142.70231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.158	1	37.251	36.751	37.751	0.093018								0	0	0	0.35611	1	7615	7615		12.241	0	1				7800	6341	4210	4210	10297	10297					0.13666535982611094
ESKIRFVHK	9	Unmodified	_ESKIRFVHK_					0	0	0		ENST00000475319.1_1_6:127611016-127636085:-|nuORF;nc|ENSG00000093144|Q9NTX5-3|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1	ENST00000475319.1_1_6:127611016-127636085:-|nuORF	ENST00000475319.1_1_6:127611016-127636085:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3661499023438	2	572.33529	1142.65603	0.20746	0.00011874	-0.38931	-0.00022282	-0.18185	-0.00010408	572.33493691989	52.276	0.41277	52.276	51.941	52.354	0					29	14	3	0	0	0	0.22674	1	12230	12230		22.736	0	1	309310			7801	1436	4211	4211	10298	10298					0.09040515871174648
ESKNPESDSY	10	Unmodified	_ESKNPESDSY_					0	0	0			REV__ENSG00000182348|ENST00000333190|ZNF804B	REV__ENSG00000182348|ENST00000333190|ZNF804B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.2955932617188	2	578.243657	1154.47276	0.92287	0.00053364	0.0092604	5.3548E-06	0.93213	0.000539	578.2438630974909	47.165	0.5194	47.219	46.972	47.491	0.054371					39	18	3	0	0	0	0.31143	1	10721	10721		12.241	0	1	702870	+		7802	18193	4212	4212	10299	10299					-0.09829547491790436
ESKVVLKLV	9	Unmodified	_ESKVVLKLV_					0	0	0			REV__ENST00000427220.5_1_3:9860474-9876502:+|nuORF	REV__ENST00000427220.5_1_3:9860474-9876502:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.3087463378906	2	507.831517	1013.64848	0.31301	0.00015896	-1.7698	-0.00089876	-1.4568	-0.0007398	507.8303469634964	52.075	0.43585	52.126	51.874	52.309	0.050575					28	15	3	0	0	0	0.25417	1	12125	12125		2.0598	0.57785	1	335420	+		7803	19053	4213	4213	10300	10300					0.1422036355089631
ESLDAASPAK	10	Unmodified	_ESLDAASPAK_					0	0	0			REV__nc|ENSG00000147010|Q96B97-2|SH3KBP1	REV__nc|ENSG00000147010|Q96B97-2|SH3KBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7720642089844	2	494.750921	987.48729	0.10442	5.1664E-05	1.2616	0.0006242	1.3661	0.00067586	494.7517025464512	14.669	0.52961	14.669	14.395	14.925	0					29	18	2	0	0	0	0.31323	1	750	750		15.248	1.3424	1	105040	+		7804	23022	4214	4214	10301	10301					-0.006954305530030069
ESLGAILRK	9	Unmodified	_ESLGAILRK_					0	0	0		ENST00000426878.2_2_3:8591760-8591853:+|nuORF	ENST00000426878.2_2_3:8591760-8591853:+|nuORF	ENST00000426878.2_2_3:8591760-8591853:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.803466796875	2	493.803291	985.59203	0.25017	0.00012353	0.11648	5.7518E-05	0.36665	0.00018105	493.80326579228387	27.157	0.48502	27.135	26.926	27.411	-0.021412					41	16	4	0	0	0	0.063853	1	4582	4582		47.749	0.1543	1	182310			7805	10424	4215	4215	10302	10302					0.09865735714231505
ESLNAPSKAFL	11	Unmodified	_ESLNAPSKAFL_					0	0	0			REV__ENST00000510707.1_1_4:85165918-85166545:+|nuORF	REV__ENST00000510707.1_1_4:85165918-85166545:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.7824096679688	2	588.816596	1175.61864	0.47408	0.00027914	-0.46865	-0.00027595	0.0054261	3.195E-06	589.3184775009858	79.308	0.82877	79.369	78.713	79.542	0.061409					48	36	2	0	0	0	0.32951	1	20406	20406		8.7454	2.5396	1	113140	+		7806	21801	4216	4216	10303	10303					0.037853798148944406
ESLNTLFTQIC	11	Unmodified	_ESLNTLFTQIC_					0	0	0		ENST00000503310.1_1_5:118877714-118877771:+|nuORF	ENST00000503310.1_1_5:118877714-118877771:+|nuORF	ENST00000503310.1_1_5:118877714-118877771:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.2065124511719	3	423.544556	1267.61184	-0.97893	-0.00041462	-1.9642	-0.00083193	-2.9431	-0.0012466	423.54318168036076	34.848	0.13826	34.925	34.866	35.005	0.077377					6	4	2	0	0	0	0.33146	1	6916	6916		4.1166	0	1	37270			7807	11290	4217	4217	10304	10304					-0.011263011279652346
ESLPDHEK	8	Unmodified	_ESLPDHEK_					0	0	0		ENSG00000115339|ENST00000392701|GALNT3;ENST00000463254.1_1_2:166615181-166618484:-|nuORF	ENSG00000115339|ENST00000392701|GALNT3	ENSG00000115339|ENST00000392701|GALNT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.25030517578125	2	477.729989	953.445425	0.018584	8.8781E-06	0.11794	5.6342E-05	0.13652	6.522E-05	477.7297809727812	15.596	0.4115	15.532	15.424	15.836	-0.064413					19	13	2	0	0	0	0.32886	1	1142	1142		21.747	1.293	1	66127			7808	2636	4218	4218	10305	10305					-0.03315986241511837
ESLSEWGSDKF	11	Unmodified	_ESLSEWGSDKF_					0	0	0			REV__LTR19B_dup80|chr6:106743802-106744351:-|4.284117748742692|0.4191254365420057|3.35|537.0|29|3|anti-sense	REV__LTR19B_dup80|chr6:106743802-106744351:-|4.284117748742692|0.4191254365420057|3.35|537.0|29|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	643.2689819335938	2	642.790775	1283.567	0.67972	0.00043692	-2.3169	-0.0014893	-1.6372	-0.0010524	642.7892580000301	64.275	0.45056	64.265	64.045	64.495	-0.0095291					22	16	2	0	0	0	0.32736	1	15992	15992		12.241	2.1667	1	205360	+		7809	22842	4219	4219	10306	10306					-0.06344408669679069
ESLTKHLLS	9	Unmodified	_ESLTKHLLS_					0	0	0			REV__ENST00000492728.1_1_1:146714404-146731617:+|nuORF	REV__ENST00000492728.1_1_1:146714404-146731617:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8253784179688	2	514.292756	1026.57096	-0.21465	-0.00011039	0.71557	0.00036801	0.50092	0.00025762	514.7952889423285	12.951	0.57853	12.884	12.61	13.189	-0.067495					29	19	2	0	0	0	0.25779	1	319	319		6.2058	0.47393	1	136740	+		7810	15535	4220	4220	10307	10307					0.058737256147196604
ESLYTLISKFF	11	Unmodified	_ESLYTLISKFF_					0	0	0		nc|ENSG00000148925|Q9BSF8-2|BTBD10	nc|ENSG00000148925|Q9BSF8-2|BTBD10	nc|ENSG00000148925|Q9BSF8-2|BTBD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.26361083984375	3	449.911345	1346.7122	-0.0015309	-6.8875E-07	-0.42263	-0.00019014	-0.42416	-0.00019083	449.9116363978417	23.308	0.64277	23.221	22.79	23.433	-0.087608					30	22	2	0	0	0	0.32951	1	3384	3384		10.315	6.4693	1	46558			7811	12751	4221	4221	10308	10308					0.05271679197312551
ESMRRGPRQF	10	Unmodified	_ESMRRGPRQF_					0	0	0			REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3	REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2683410644531	3	421.884017	1262.63022	0.17246	7.2757E-05	-1.6037	-0.00067657	-1.4312	-0.00060381	422.21744632838664	36.806	0.61924	36.806	36.562	37.181	0					43	21	3	0	0	0	0.3183	1	7614	7614		3.0723	1.9625	1	197120	+		7812	14068	4222	4222	10309	10309					0.009412983572474332
ESMRRGPRQF	10	Unmodified	_ESMRRGPRQF_					0	0	0			REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3	REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	421.884017	1262.63022	0.11248	4.7453E-05	-1.4681	-0.00061938	-1.3556	-0.00057192	422.2176319403941	36.653	0.43972	36.741	36.566	37.006	0.08741	-0.066918	0.00020641	NaN	1.4551	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160990	+		7813	14068	4222	4222							0.009412983572474332
ESNFAQHQNI	10	Unmodified	_ESNFAQHQNI_					0	0	0		ENSG00000197863|ENST00000356725|ZNF790	ENSG00000197863|ENST00000356725|ZNF790	ENSG00000197863|ENST00000356725|ZNF790	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.2758178710938	2	594.275626	1186.5367	0.26707	0.00015871	0.21315	0.00012667	0.48022	0.00028538	594.2756950900942	41.001	0.80883	41.001	40.604	41.413	0					77	29	4	0	0	0	0.24105	1	8842	8842		27.629	1.3607	1	1177400			7814	8006	4223	4223	10310	10310					-0.04910722544195778
ESNFAQHQNI	10	Unmodified	_ESNFAQHQNI_					0	0	0		ENSG00000197863|ENST00000356725|ZNF790	ENSG00000197863|ENST00000356725|ZNF790	ENSG00000197863|ENST00000356725|ZNF790	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2759399414062	2	594.275626	1186.5367	0.41587	0.00024714	0.161	9.5681E-05	0.57688	0.00034282	594.2755373608317	40.6	0.80922	40.699	40.427	41.236	0.099407					67	29	4	0	0	0	0.18562	1	8662	8662		34.402	1.616	1	1630900			7815	8006	4223	4223	10311	10311					-0.04910722544195778
ESNKPRPS	8	Unmodified	_ESNKPRPS_					0	0	0		ENST00000479127.5_1_21:46378257-46396715:+|nuORF;nc|ENSG00000160256|Q9NSI2-2|SLX9;ENSG00000160256|ENST00000291634|SLX9	ENST00000479127.5_1_21:46378257-46396715:+|nuORF	ENST00000479127.5_1_21:46378257-46396715:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.2662048339844	2	457.738148	913.461744	-0.031295	-1.4325E-05	2.4753	0.0011331	2.444	0.0011187	457.737874736967	19.079	0.69575	18.962	18.678	19.374	-0.11739					49	24	3	0	0	0	0.34272	1	2133	2133		7.9102	3.5809	1	37404			7816	5454	4224	4224	10312	10312					0.0015513971524114822
ESNLALYAY	9	Unmodified	_ESNLALYAY_					0	0	0			REV__nc|ENSG00000004399|Q9Y4D7-2|PLXND1	REV__nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.24609375	2	522.25584	1042.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.137	1	67.137	66.637	67.637	0								0	0	0	0.17683	1	16842	16842		28.487	4.2769	1		+		7817	13329	4225	4225	10313	10313					-0.022422425476179342
ESPAQTLPR	9	Unmodified	_ESPAQTLPR_					0	0	0			REV__ENSG00000198837|ENST00000361217|DENND4B	REV__ENSG00000198837|ENST00000361217|DENND4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.28302001953125	2	499.766906	997.519259	0.2931	0.00014648	-1.7996	-0.00089939	-1.5065	-0.00075291	499.76615476575876	25.164	0.57642	25.164	24.986	25.562	0					26	19	2	0	0	0	0.23784	1	4056	4056		19.257	0	1	101230	+		7818	18872	4226	4226	10314	10314					0.02039981920813716
ESPRGGLV	8	Unmodified	_ESPRGGLV_					0	0	0			REV__ENST00000566352.1_1_16:57220430-57238448:+|nuORF	REV__ENST00000566352.1_1_16:57220430-57238448:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5534362792969	2	407.72451	813.434466	-0.22948	-9.3565E-05	0.52648	0.00021466	0.297	0.00012109	407.7245258462839	31.545	0.66775	31.545	31.258	31.925	0					53	23	4	0	0	0	0.29634	1	5858	5858		34.102	9.4286	1	1760400	+		7819	22096	4227	4227	10315	10315					0.02028656174866228
ESRIHLAF	8	Unmodified	_ESRIHLAF_					0	0	0		ENSG00000121904|ENST00000373381|CSMD2;nc|ENSG00000121904|Q7Z408|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.2929382324219	2	486.766709	971.518865	0.093463	4.5495E-05	0.3886	0.00018916	0.48206	0.00023465	486.76656208476714	16.076	0.48145	16.076	15.867	16.349	0					25	16	2	0	0	0	0.34272	1	1197	1197		7.9102	2.6795	1	48496			7820	3020	4228	4228	10316	10316					0.03196606991616591
ESRLKVIL	8	Unmodified	_ESRLKVIL_					0	0	0		nc|ENSG00000130224|Q5VUJ6-2|LRCH2;ENSG00000130224|ENST00000317135|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7619323730469	2	479.30821	956.601866	0.13468	6.4555E-05	0.038279	1.8347E-05	0.17296	8.2903E-05	479.3082341437017	33.925	0.24591	33.992	33.907	34.153	0.066704					12	8	2	0	0	0	0.34353	1	6620	6620		4.756	0	1	72282			7821	3458	4229	4229	10317	10317					0.12182923719615246
ESRPWVDDELE	11	Unmodified	_ESRPWVDDELE_					0	0	0		ENST00000526904.5_1_1:1250884-1259984:-|nuORF;ENST00000526113.1_1_1:1250782-1259984:-|nuORF;ENST00000421495.6_1_1:1249445-1259984:-|nuORF	ENST00000526904.5_1_1:1250884-1259984:-|nuORF	ENST00000526904.5_1_1:1250884-1259984:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7403869628906	3	458.877251	1373.60992	0.074215	3.4056E-05	-1.6926	-0.0007767	-1.6184	-0.00074264	458.87662631712857	16.318	0.40725	16.256	16.006	16.414	-0.062534					17	13	2	0	0	0	0.33346	1	1330	1330		0.50596	0.051438	1	19256			7822	10374	4230	4230	10318	10318					-0.061936386122170006
ESRRLRTPG	9	Unmodified	_ESRRLRTPG_					0	0	0		ENST00000370331.5_1_1:93201975-93202140:-|nuORF	ENST00000370331.5_1_1:93201975-93202140:-|nuORF	ENST00000370331.5_1_1:93201975-93202140:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.9222412109375	2	536.304521	1070.59449	0.171	9.1706E-05	0.0038519	2.0658E-06	0.17485	9.3772E-05	536.30454555869	14.208	0.68884	14.208	13.902	14.591	0					58	23	4	0	0	0	0.25988	1	598	598		3.9444	0.94915	1	668500			7823	9798	4231	4231	10319	10319					0.06201584171913055
ESRRLRTPG	9	Unmodified	_ESRRLRTPG_					0	0	0		ENST00000370331.5_1_1:93201975-93202140:-|nuORF	ENST00000370331.5_1_1:93201975-93202140:-|nuORF	ENST00000370331.5_1_1:93201975-93202140:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	536.304521	1070.59449	0.034169	1.8325E-05	0.19166	0.00010279	0.22583	0.00012111	536.304673676587	14.326	0.72018	14.221	13.903	14.623	-0.10466	0.00016528	0.00013126	NaN	3.9444	53	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	722180			7824	9798	4231	4231							0.06201584171913055
ESRRRTKTSS	10	Unmodified	_ESRRRTKTSS_					0	0	0			REV__ENST00000305623.12_1_10:5327839-5330384:-|nuORF	REV__ENST00000305623.12_1_10:5327839-5330384:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2217102050781	3	403.221575	1206.6429	-0.15741	-6.3472E-05	0.97713	0.000394	0.81971	0.00033053	403.2220341530304	17.645	0.75929	17.645	17.318	18.077	0					44	25	2	0	0	0	0.32033	1	1708	1708		1.7423	0.14999	1	95123	+		7825	19852	4232	4232	10320	10320					0.04784033021155665
ESSHSFIFLAP	11	Unmodified	_ESSHSFIFLAP_					0	0	0		ENST00000348165.9_1_7:157000141-157000207:+|nuORF	ENST00000348165.9_1_7:157000141-157000207:+|nuORF	ENST00000348165.9_1_7:157000141-157000207:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.559326171875	3	412.208273	1233.60299	0.43716	0.0001802	1.0728	0.00044224	1.51	0.00062244	412.20867273168636	36.133	0.21494	36.219	36.085	36.3	0.08625					10	7	2	0	0	0	0.32293	1	7301	7301		7.0371	0	1	163710			7826	9569	4233	4233	10321	10321					-0.004469067021318551
ESSPHSRIL	9	Unmodified	_ESSPHSRIL_					0	0	0		ENST00000337843.6_1_22:37577526-37577784:-|nuORF	ENST00000337843.6_1_22:37577526-37577784:-|nuORF	ENST00000337843.6_1_22:37577526-37577784:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2905883789062	2	513.272355	1024.53016	0.33863	0.00017381	0.69743	0.00035797	1.0361	0.00053178	513.272984655331	21.557	0.55421	21.557	21.368	21.922	0					26	19	2	0	0	0	0.29176	1	2873	2873		10.074	0	1	57706			7827	9496	4234	4234	10322	10322					0.01887384295105221
ESSVNQGREE	10	Unmodified	_ESSVNQGREE_					0	0	0		ENST00000390437.2_1_14:22356052-22356139:+|nuORF	ENST00000390437.2_1_14:22356052-22356139:+|nuORF	ENST00000390437.2_1_14:22356052-22356139:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.754638671875	2	567.754724	1133.49489	0.2579	0.00014643	-0.10404	-5.907E-05	0.15386	8.7356E-05	567.7545851208964	31.799	0.88852	31.799	31.45	32.338	0					60	31	2	0	0	0	0.34795	1	5993	5993		13.042	13.042	1	687560			7828	10023	4235	4235	10323	10323					-0.06651323023356781
ESTFRFERFF	10	Unmodified	_ESTFRFERFF_					0	0	0			REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.571044921875	3	455.891055	1364.65134	-0.21591	-9.8431E-05	0.98516	0.00044913	0.76925	0.0003507	456.2253232661408	18.608	0.41567	18.55	18.372	18.788	-0.058174					29	14	3	0	0	0	0.32082	1	2037	2037		3.3196	0.58445	1	49065	+		7829	13683	4236	4236	10324	10324					-0.016404130622731827
ESTLHKLHTFI	11	Unmodified	_ESTLHKLHTFI_					0	0	0		ENST00000376088.7_2_X:49688082-49688211:+|nuORF	ENST00000376088.7_2_X:49688082-49688211:+|nuORF	ENST00000376088.7_2_X:49688082-49688211:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.5688171386719	3	442.578588	1324.71394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.734	1	16.672	16.172	17.172	-0.062534								0	0	0	0.36872	1	1416	1416		4.1166	1.4854	1				7830	9920	4237	4237	10325	10325					0.06456733005938986
ESTPNTIKAF	10	Unmodified	_ESTPNTIKAF_					0	0	0		ENSG00000145723|ENST00000399004|GIN1	ENSG00000145723|ENST00000399004|GIN1	ENSG00000145723|ENST00000399004|GIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.8037719726562	2	554.287671	1106.56079	0.70872	0.00039284	-0.24542	-0.00013603	0.4633	0.0002568	554.2871992419542	50.863	1.1932	50.872	50.027	51.22	0.0095634					67	44	3	0	0	0	0.29519	1	11894	11894		15.847	2.8047	1	470410			7831	4668	4238	4238	10326	10326					0.011771178894605328
ESTQKLSEVA	10	Unmodified	_ESTQKLSEVA_					0	0	0		ENST00000478856.5_1_3:100053614-100067682:+|nuORF;NIT2|p.K112Rfs*21|1|0.16|ENSG00000114021|chr3:100341158-100341158|A/-|frameshift_variant;ENST00000465368.5_1_3:100053614-100064548:+|nuORF;ENSG00000114021|ENST00000394140|NIT2	ENST00000478856.5_1_3:100053614-100067682:+|nuORF	ENST00000478856.5_1_3:100053614-100067682:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.808837890625	2	546.282586	1090.55062	0.19592	0.00010703	-0.22904	-0.00012512	-0.03312	-1.8093E-05	546.2797168742502	13.992	0.30984	13.887	13.713	14.023	-0.10466					29	10	4	0	0	0	0.31237	1	585	585		16.149	3.1066	1	41671			7832	10982	4239	4239	10327	10327					0.008965101642388618
ESTSWNEYTFF	11	Unmodified	_ESTSWNEYTFF_					0	0	0		nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB;ENST00000552253.1_1_12:70986014-71031175:-|nuORF;ENST00000538174.6_1_12:70979073-71031175:-|nuORF;PTPRB|p.S698Pfs*13|1|0.43|ENSG00000127329|chr12:70576478-70576478|A/-|frameshift_variant	nc|ENSG00000127329|P23467-4|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.8662414550781	3	470.866464	1409.57756	0.28396	0.00013371	0.06616	3.1152E-05	0.35012	0.00016486	470.8664193217878	46.778	0.5186	46.778	46.566	47.084	0					41	17	3	0	0	0	0.41892	1	10566	10566		8.7518	2.1283	1	904810			7833	3313	4240	4240	10328	10328					-0.11084426015258941
ESTSWNEYTFF	11	Unmodified	_ESTSWNEYTFF_					0	0	0		nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB;ENST00000552253.1_1_12:70986014-71031175:-|nuORF;ENST00000538174.6_1_12:70979073-71031175:-|nuORF;PTPRB|p.S698Pfs*13|1|0.43|ENSG00000127329|chr12:70576478-70576478|A/-|frameshift_variant	nc|ENSG00000127329|P23467-4|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	470.866464	1409.57756	0.14888	7.0102E-05	-0.55804	-0.00026276	-0.40916	-0.00019266	470.86625435012417	46.585	0.4954	46.639	46.413	46.908	0.054375	-0.040207	-0.00010774	NaN	8.7518	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	770480			7834	3313	4240	4240							-0.11084426015258941
ESVFRSQQF	9	Unmodified	_ESVFRSQQF_					0	0	0		ENST00000349841.9_1_3:169497206-169497260:+|nuORF	ENST00000349841.9_1_3:169497206-169497260:+|nuORF	ENST00000349841.9_1_3:169497206-169497260:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.7586669921875	2	564.277638	1126.54072	0.5081	0.00028671	-1.179	-0.00066529	-0.67091	-0.00037858	564.2769781988239	64.193	1.1389	64.193	63.771	64.91	0					85	41	3	0	0	0	0.2322	1	15837	15837		10.074	0	1	702160			7835	9573	4241	4241	10329	10329					-0.01748633050465287
ESVIRPVKR	9	Unmodified	_ESVIRPVKR_					0	0	0			REV__ENSG00000146250|ENST00000369700|PRSS35	REV__ENSG00000146250|ENST00000369700|PRSS35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2442626953125	2	542.33529	1082.65603	0.3085	0.00016731	0.11572	6.2762E-05	0.42422	0.00023007	542.3353912004519	15.527	0.29978	15.463	15.305	15.605	-0.064414					14	9	2	0	0	0	0.25526	1	1008	1008		7.9102	0.62092	1	54178	+		7836	16338	4242	4242	10330	10330					0.1180051587118669
ESVIRPVKR	9	Unmodified	_ESVIRPVKR_					0	0	0			REV__ENSG00000146250|ENST00000369700|PRSS35	REV__ENSG00000146250|ENST00000369700|PRSS35	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	542.33529	1082.65603	0.2126	0.0001153	-0.45521	-0.00024688	-0.24261	-0.00013158	542.3351657094928	15.386	0.30215	15.386	15.289	15.591	0	-0.047215	-0.00048884	NaN	7.9102	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31891	+		7837	16338	4242	4242							0.1180051587118669
ESVIRPVKR	9	Unmodified	_ESVIRPVKR_					0	0	0			REV__ENSG00000146250|ENST00000369700|PRSS35	REV__ENSG00000146250|ENST00000369700|PRSS35	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	542.33529	1082.65603	0.31596	0.00017136	0.30589	0.00016589	0.62185	0.00033725	542.3353848366932	15.561	0.38107	15.451	15.259	15.64	-0.10981	0.017699	0.0003367	NaN	7.9102	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42989	+		7838	16338	4242	4242							0.1180051587118669
ESVQLLPGLK	10	Unmodified	_ESVQLLPGLK_					0	0	0			REV__ENST00000317568.9_1_11:65179968-65180214:+|nuORF	REV__ENST00000317568.9_1_11:65179968-65180214:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2844848632812	2	542.324057	1082.63356	0.36233	0.0001965	-3.1737	-0.0017212	-2.8114	-0.0015247	542.3222662369064	15.735	0.29067	15.67	15.545	15.836	-0.064414					12	9	2	0	0	0	0.32123	1	1149	1149		1.6526	0	1	23289	+		7839	19944	4243	4243	10331	10331					0.09554871682894372
ESVRAHFYDY	10	Unmodified	_ESVRAHFYDY_					0	0	0		nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.7375793457031	3	429.531527	1285.57275	-0.10857	-4.6636E-05	3.5748	0.0015355	3.4662	0.0014889	429.5332299406423	17.005	0.14544	17.005	16.952	17.097	0					6	4	2	0	0	0	0.31358	1	1507	1507		8.4443	6.0095	1	19804			7840	12769	4244	4244	10332	10332					-0.058612653673208115
ESWKRTLE	8	Unmodified	_ESWKRTLE_					0	0	0			REV__ENSG00000172469|ENST00000358812|MANEA	REV__ENSG00000172469|ENST00000358812|MANEA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2987670898438	2	524.774731	1047.53491	0.07014	3.6808E-05	0.11723	6.152E-05	0.18737	9.8328E-05	524.7745247620833	12.75	0.23935	12.682	12.58	12.819	-0.067496					15	7	3	0	0	0	0.34272	1	196	196		7.9102	0	1	77001	+		7841	17715	4245	4245	10333	10333					0.013042684378660852
ESWKRTLE	8	Unmodified	_ESWKRTLE_					0	0	0			REV__ENSG00000172469|ENST00000358812|MANEA	REV__ENSG00000172469|ENST00000358812|MANEA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	524.774731	1047.53491	0.1577	8.2758E-05	-0.23465	-0.00012314	-0.076951	-4.0382E-05	524.7744664942232	12.736	0.17443	12.736	12.641	12.815	0	0.045809	-3.0114E-05	NaN	7.9102	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85129	+		7842	17715	4245	4245							0.013042684378660852
ESWPDYEDIY	10	Unmodified	_ESWPDYEDIY_					0	0	0		ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B	ENSG00000115750|ENST00000263663|TAF1B	ENSG00000115750|ENST00000263663|TAF1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.5752258300781	3	439.515431	1315.52446	0.013276	5.8348E-06	-1.4788	-0.00064995	-1.4655	-0.00064411	439.5142920427707	34.14	0.1411	34.206	34.149	34.29	0.06636					5	4	2	0	0	0	0.3213	1	6720	6720		1.9064	0.1641	1	18603			7843	2672	4246	4246	10334	10334					-0.1206780379789052
ESWVQDKAWQR	11	Unmodified	_ESWVQDKAWQR_					0	0	0		ENST00000476968.5_1_1:32540652-32561345:+|nuORF	ENST00000476968.5_1_1:32540652-32561345:+|nuORF	ENST00000476968.5_1_1:32540652-32561345:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.92694091796875	3	478.237114	1431.68951	0.14802	7.0788E-05	1.3314	0.00063674	1.4795	0.00070753	478.2380167382647	26.996	0.58533	26.974	26.763	27.349	-0.021412					33	20	2	0	0	0	0.33303	1	4541	4541		2.4348	0	1	74193			7844	10951	4247	4247	10335	10335					-0.009065271475947156
ESYDAELVS	9	Unmodified	_ESYDAELVS_					0	0	0			REV__ENSG00000102385|ENST00000395209|DRP2	REV__ENSG00000102385|ENST00000395209|DRP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2336120605469	2	506.727112	1011.43967	0.19372	9.8165E-05	-0.9236	-0.00046802	-0.72988	-0.00036985	507.2290109998186	19.297	0.40648	19.242	18.989	19.395	-0.055693					17	13	2	0	0	0	0.25988	1	2186	2186		3.9444	1.0552	1	25051	+		7845	14320	4248	4248	10336	10336					-0.06559129543859399
ESYIEDPLL	9	Unmodified	_ESYIEDPLL_					0	0	0			REV__nc|ENSG00000112782|Q9NZA1|CLIC5	REV__nc|ENSG00000112782|Q9NZA1|CLIC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3303833007812	2	539.76878	1077.52301	0.81418	0.00043947	-0.33783	-0.00018235	0.47635	0.00025712	539.7683938541327	77.846	0.57198	77.902	77.679	78.251	0.055412					43	20	3	0	0	0	0.19839	1	20131	20131		15.847	4.2069	1	208370	+		7846	22950	4249	4249	10337	10337					-0.01265393095991385
ESYPEYFQI	9	Unmodified	_ESYPEYFQI_					0	0	0			REV__DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	REV__DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.7825317382812	2	588.266404	1174.51826	0.61819	0.00036366	-0.022598	-1.3293E-05	0.5956	0.00035037	588.2656812400046	78.888	0.26571	78.888	78.749	79.015	0					13	10	2	0	0	0	0.24848	1	20395	20395		13.906	3.0821	1	67928	+		7847	13293	4250	4250	10338	10338					-0.06202277238753595
ESYSVYVYK	9	Unmodified	_ESYSVYVYK_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	ENSG00000185130|ENST00000377401|H2BC13;ENSG00000197903|ENST00000356950|H2BC12	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.276611328125	2	569.276772	1136.53899	0.22929	0.00013053	0.051891	2.954E-05	0.28118	0.00016007	569.2766297441506	43.368	0.65046	43.368	43.062	43.713	0					55	23	3	0	0	0	0.12642	3	9543	9496;9543;9576		34.402	15.145	1	1840900			7848	7510;8012	4251	4251	10339;10340;10341	10340					-0.023816868590984086
ESYSVYVYK	9	Unmodified	_ESYSVYVYK_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	ENSG00000185130|ENST00000377401|H2BC13;ENSG00000197903|ENST00000356950|H2BC12	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.2772827148438	2	569.276772	1136.53899	0.4626	0.00026335	-0.19304	-0.00010989	0.26956	0.00015345	569.2765651791389	43.043	0.71025	43.128	42.78	43.49	0.085197					61	25	3	0	0	0	0.13748	1	9401	9401		32.786	8.7651	1	1739300			7849	7510;8012	4251	4251	10342	10342					-0.023816868590984086
ESYSVYVYK	9	Unmodified	_ESYSVYVYK_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	ENSG00000185130|ENST00000377401|H2BC13;ENSG00000197903|ENST00000356950|H2BC12	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.2769775390625	2	569.276772	1136.53899	0.10765	6.1285E-05	0.33457	0.00019046	0.44223	0.00025175	569.2768217432919	43.041	0.72871	43.132	42.8	43.529	0.091362					61	26	3	0	0	0	0.088443	1	9385	9385		39.95	26.044	1	1748100			7850	7510;8012	4251	4251	10343	10343					-0.023816868590984086
ETAEDRDKNKP	11	Unmodified	_ETAEDRDKNKP_					0	0	0		ENSG00000138604|ENST00000261858|GLCE	ENSG00000138604|ENST00000261858|GLCE	ENSG00000138604|ENST00000261858|GLCE	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8822937011719	3	434.880996	1301.62116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.75	1	20.697	20.197	21.197	-0.05291								0	0	0	0.3674	1	2631	2631		4.4062	1.7749	1				7851	4162	4252	4252	10344	10344					-0.01758816518099593
ETAKKIHFRTP	11	Unmodified	_ETAKKIHFRTP_					0	0	0		nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL;nc|ENSG00000157927|Q96JH8-3|RADIL;ENST00000472999.5_1_7:4839011-4843599:-|nuORF;nc|ENSG00000157927|Q96JH8-2|RADIL	nc|ENSG00000157927|Q96JH8-1|RADIL	nc|ENSG00000157927|Q96JH8-1|RADIL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.71563720703125	3	443.254216	1326.74082	0.26992	0.00011964	0.83915	0.00037196	1.1091	0.0004916	443.25473666343566	32.451	1.2159	32.505	31.877	33.093	0.054371					69	43	2	0	0	0	0.3325	1	6074	6074		4.1166	0	1	306460			7852	5334	4253	4253	10345	10345					0.09051841617133505
ETAVKKLNG	9	Unmodified	_ETAVKKLNG_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7713928222656	2	480.279649	958.544745	-0.14776	-7.0968E-05	-1.9707	-0.00094648	-2.1184	-0.0010174	480.27846184033837	13.444	0.3132	13.444	13.254	13.567	0					15	10	2	0	0	0	0.25938	1	458	458		4.3292	1.44	1	47133			7853	5064	4254	4254	10346	10346					0.06381456443239131
ETEEELLEL	9	Unmodified	_ETEEELLEL_					0	0	0			REV__nc|ENSG00000100583|Q9P1V8-2|SAMD15	REV__nc|ENSG00000100583|Q9P1V8-2|SAMD15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2941284179688	2	552.768977	1103.5234	0.60364	0.00033367	0.25779	0.0001425	0.86142	0.00047617	553.2688482412569	54.123	0.1884	54.123	53.974	54.162	0					9	6	2	0	0	0	0.2451	1	12826	12826		15.847	0	1	117410	+		7854	14209	4255	4255	10347	10347					-0.024220181667942597
ETEFQEQQEP	10	Unmodified	_ETEFQEQQEP_					0	0	0			REV__nc|ENSG00000042980|Q9UKQ2-2|ADAM28	REV__nc|ENSG00000042980|Q9UKQ2-2|ADAM28	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.7716674804688	2	632.770039	1263.52553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.608	1	41.705	41.205	42.205	0.096626								0	0	0	0.36441	1	8976	8976		8.7454	0	1		+		7855	13535	4256	4256	10348	10348					-0.09569589428974723
ETERDVAFT	9	Unmodified	_ETERDVAFT_					0	0	0		ENSG00000135951|ENST00000393483|TSGA10;nc|ENSG00000135951|Q9BZW7-2|TSGA10;ENST00000478090.5_1_2:99689501-99743552:-|nuORF	ENSG00000135951|ENST00000393483|TSGA10	ENSG00000135951|ENST00000393483|TSGA10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2940063476562	2	534.253828	1066.4931	0.97995	0.00052354	-2.2103	-0.0011808	-1.2303	-0.0006573	534.2549081473306	77.843	0.22589	77.811	77.73	77.956	-0.031334					13	7	2	0	0	0	0.25622	1	20128	20128		7.2892	1.0834	1	85095			7856	3925	4257	4257	10349	10349					-0.0374833204132301
ETFDSMKHSN	10	Unmodified	_ETFDSMKHSN_					0	0	0			REV__ENST00000266771.9_1_12:129278576-129278744:-|nuORF	REV__ENST00000266771.9_1_12:129278576-129278744:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.2567749023438	2	598.256045	1194.49754	0.32466	0.00019423	0.38305	0.00022916	0.70772	0.0004234	598.2561065296396	46.636	0.27981	46.69	46.516	46.796	0.054375					12	9	2	0	0	0	0.31681	1	10542	10542		18.373	0.22675	1	365660	+		7857	19656	4258	4258	10350	10350					-0.09193190890050573
ETFDSMKHSN	10	Unmodified	_ETFDSMKHSN_					0	0	0			REV__ENST00000266771.9_1_12:129278576-129278744:-|nuORF	REV__ENST00000266771.9_1_12:129278576-129278744:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	598.256045	1194.49754	0.6678	0.00039952	1.1537	0.00069018	1.8215	0.0010897	598.2564340463572	46.791	0.31296	46.791	46.648	46.961	0	0.096914	0.00077088	NaN	18.373	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	546420	+		7858	19656	4258	4258							-0.09193190890050573
ETFDSMKHSN	10	Unmodified	_ETFDSMKHSN_					0	0	0			REV__ENST00000266771.9_1_12:129278576-129278744:-|nuORF	REV__ENST00000266771.9_1_12:129278576-129278744:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	598.256045	1194.49754	0.6543	0.00039144	-0.054155	-3.2398E-05	0.60014	0.00035904	598.2558863116042	46.548	0.45855	46.6	46.358	46.817	0.052574	-0.093512	-0.00067427	NaN	18.373	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316890	+		7859	19656	4258	4258							-0.09193190890050573
ETFIRYIF	8	Unmodified	_ETFIRYIF_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;ENST00000561079.1_1_15:51755569-51758496:-|nuORF	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.8272094726562	2	544.792392	1087.57023	0.49413	0.0002692	0.87239	0.00047527	1.3665	0.00074447	544.7927641888999	71.159	2.0433	71.159	69.92	71.963	0					118	73	2	0	0	0	0.27422	1	17866	17866		40.449	19.577	1	448470			7860	1867	4259	4259	10351	10351					0.029949309656331025
ETFRLRDRELE	11	Unmodified	_ETFRLRDRELE_					0	0	0			REV__ENSG00000213780|ENST00000259895|GTF2H4	REV__ENSG00000213780|ENST00000259895|GTF2H4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7660217285156	3	488.591557	1462.75284	0.60654	0.00029635	-0.14585	-7.1259E-05	0.46069	0.00022509	488.9260526633637	32.412	0.40813	32.467	32.182	32.59	0.055309					20	14	2	0	0	0	0.33321	1	6144	6144		1.9275	1.9275	1	101910	+		7861	19043	4260	4260	10352	10352					0.03997413569663877
ETFRNRLAPSL	11	Unmodified	_ETFRNRLAPSL_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.2510681152344	3	435.242088	1302.70443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.317	1	70.317	69.817	70.817	0								0	0	0	0.34052	1	17816	17816		10.315	0	1		+		7862	14758	4261	4261	10353	10353					0.06518964720407894
ETFRTTIEK	9	Unmodified	_ETFRTTIEK_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;chr3:149212698-149217866|281|14.11|0.21|6.05|-|ENST00000455472|CP,CP	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8007202148438	2	562.800946	1123.58734	0.10669	6.0046E-05	0.15246	8.5803E-05	0.25915	0.00014585	562.800948579535	25.822	0.56948	25.822	25.591	26.161	0					45	19	3	0	0	0	0.023171	2	4151	4151;4198		62.869	27.937	1	695900			7863	632	4262	4262	10354;10355	10354					0.030488067807937114
ETFRTTIEK	9	Unmodified	_ETFRTTIEK_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;chr3:149212698-149217866|281|14.11|0.21|6.05|-|ENST00000455472|CP,CP	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8007202148438	2	562.800946	1123.58734	0.12197	6.8642E-05	0.13154	7.4029E-05	0.2535	0.00014267	562.8008821691991	25.87	0.70683	25.831	25.5	26.206	-0.03867					57	24	3	0	0	0	0.018302	2	4172	4172;4232		66.683	35.415	1	785020			7864	632	4262	4262	10356;10357	10356					0.030488067807937114
ETFRTTIEK	9	Unmodified	_ETFRTTIEK_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;chr3:149212698-149217866|281|14.11|0.21|6.05|-|ENST00000455472|CP,CP	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8008422851562	2	562.800946	1123.58734	0.11882	6.6874E-05	0.010344	5.8217E-06	0.12917	7.2696E-05	562.8008533243578	25.927	0.7757	25.905	25.552	26.328	-0.022236					65	27	3	0	0	0	0.023171	2	4174	4174;4216		62.869	27.937	1	542070			7865	632	4262	4262	10358;10359	10358					0.030488067807937114
ETFSGVYKK	9	Unmodified	_ETFSGVYKK_					0	0	0		ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF;ENSG00000171863|ENST00000645674|RPS7	ENST00000484240.1_1_17:44798950-44799232:-|nuORF	ENST00000484240.1_1_17:44798950-44799232:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.7792358398438	2	529.779482	1057.54441	0.3897	0.00020646	0.42966	0.00022763	0.81937	0.00043408	529.7799319614841	24.226	0.99553	24.153	23.588	24.584	-0.072559					70	33	3	0	0	0	0.12279	1	3677	3677		34.932	19.085	1	351850			7866	6589	4263	4263	10360	10360					0.017940367233904908
ETFSGVYKK	9	Unmodified	_ETFSGVYKK_					0	0	0		ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF;ENSG00000171863|ENST00000645674|RPS7	ENST00000484240.1_1_17:44798950-44799232:-|nuORF	ENST00000484240.1_1_17:44798950-44799232:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7796020507812	2	529.779482	1057.54441	0.45808	0.00024268	0.88111	0.0004668	1.3392	0.00070948	529.7799088703279	24.263	0.94544	24.224	23.562	24.507	-0.038927					71	32	3	0	0	0	0.20679	2	3679	3679;3731		22.658	6.8109	1	355000			7867	6589	4263	4263	10361;10362	10361					0.017940367233904908
ETGCPVVTNP	10	Unmodified	_ETGCPVVTNP_					0	0	0			REV__nc|ENSG00000129204|P35125-2|USP6;REV__ENSG00000170832|ENST00000300896|USP32	REV__nc|ENSG00000129204|P35125-2|USP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.816650390625	2	508.739499	1015.46445	0.53718	0.00027329	-0.6016	-0.00030606	-0.064422	-3.2774E-05	508.73924752556377	40.439	0.46899	40.439	40.193	40.662	0					21	16	2	0	0	0	0.30093	1	8560	8560		16.149	8.8599	1	122480	+		7868	15403;17598	4264	4264	10363	10363					-0.042667729421282274
ETGCPVVTNP	10	Unmodified	_ETGCPVVTNP_					0	0	0			REV__nc|ENSG00000129204|P35125-2|USP6;REV__ENSG00000170832|ENST00000300896|USP32	REV__nc|ENSG00000129204|P35125-2|USP6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	508.739499	1015.46445	0.5042	0.00025651	-0.21408	-0.00010891	0.29012	0.00014759	508.73926966004643	40.267	0.38152	40.359	40.176	40.557	0.09267	-0.039869	0.00015998	NaN	11.495	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172620	+		7869	15403;17598	4264	4264							-0.042667729421282274
ETGDDQEML	9	Unmodified	_ETGDDQEML_					0	0	0			REV__ENST00000416649.6_1_3:48711345-48711510:-|nuORF	REV__ENST00000416649.6_1_3:48711345-48711510:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.800048828125	2	519.208229	1036.40191	0.54676	0.00028388	-1.0529	-0.00054668	-0.50614	-0.00026279	519.2075840841707	75.095	0.46084	75.095	74.934	75.395	0					19	16	2	0	0	0	0.25066	1	19302	19302		7.2892	0.56607	1	171570	+		7870	20820	4265	4265	10364	10364					-0.11483963800947095
ETHRRKHRK	9	Unmodified	_ETHRRKHRK_					0	0	0			REV__ENSG00000256229|ENST00000335117|ZNF486	REV__ENSG00000256229|ENST00000335117|ZNF486	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.1895446777344	3	416.577916	1246.71192	-0.37427	-0.00015591	1.8085	0.00075338	1.4342	0.00059746	416.57877546835306	42.539	0.16033	42.539	42.407	42.567	0					8	5	2	0	0	0	0.26127	1	9240	9240		1.0715	0.3738	1	75884	+		7871	19250	4266	4266	10365	10365					0.09843161831349789
ETIHAKRS	8	Unmodified	_ETIHAKRS_					0	0	0			REV__nc|ENSG00000104853|O96005-4|CLPTM1	REV__nc|ENSG00000104853|O96005-4|CLPTM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.21990966796875	2	471.261791	940.509028	0.032379	1.5259E-05	-0.50036	-0.0002358	-0.46798	-0.00022054	471.26150428541064	19.103	0.75359	19.046	18.789	19.543	-0.057018					60	25	4	0	0	0	0.32435	1	2128	2128		23.148	0	1	398460	+		7872	22926	4267	4267	10366	10366					0.036394189862335224
ETKELEVAK	9	Unmodified	_ETKELEVAK_					0	0	0			REV__ENSG00000183072|ENST00000329198|NKX2-5	REV__ENSG00000183072|ENST00000329198|NKX2-5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.31298828125	2	523.790047	1045.56554	0.39827	0.00020861	-0.2872	-0.00015043	0.11106	5.8174E-05	523.7897971473153	24.273	1.46	24.2	23.124	24.584	-0.072559					91	50	2	0	0	0	0.2451	1	3782	3782		15.847	4.3525	1	123260	+		7873	18236	4268	4268	10367	10367					0.04458002032242803
ETKEQGRQI	9	Unmodified	_ETKEQGRQI_					0	0	0		nc|ENSG00000242612|Q9NUI1-2|DECR2	nc|ENSG00000242612|Q9NUI1-2|DECR2	nc|ENSG00000242612|Q9NUI1-2|DECR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7888793945312	2	544.78837	1087.56219	0.39643	0.00021597	0.0064636	3.5213E-06	0.4029	0.00021949	544.7885254911457	16.844	0.78569	16.73	16.476	17.262	-0.11434					49	28	2	0	0	0	0.33911	2	1482	1482;1534		2.9952	0	1	142060			7874	12967	4269	4269	10368;10369	10368					0.021907519782416784
ETKFKKLFRL	10	Unmodified	_ETKFKKLFRL_					0	0	0		ENSG00000171103|ENST00000306108|TRMT61B	ENSG00000171103|ENST00000306108|TRMT61B	ENSG00000171103|ENST00000306108|TRMT61B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.892822265625	3	437.271207	1308.79179	-0.22036	-9.6359E-05	-4.3994	-0.0019237	-4.6198	-0.0020201	437.2691626134202	22.72	0.16834	22.72	22.622	22.791	0					6	5	2	0	0	0	0.32116	1	3231	3231		2.6312	0	1	26570			7875	6511	4270	4270	10370	10370					0.14974790661972293
ETKSKTIYK	9	Unmodified	_ETKSKTIYK_					0	0	0		ENSG00000145423|ENST00000274063|SFRP2	ENSG00000145423|ENST00000274063|SFRP2	ENSG00000145423|ENST00000274063|SFRP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7643432617188	2	549.313689	1096.61282	0.29461	0.00016184	-1.9904	-0.0010933	-1.6957	-0.00093149	549.312152016766	18.459	0.58867	18.341	18.089	18.678	-0.11739					31	19	2	0	0	0	0.26031	1	1944	1944		3.5965	0	1	43718			7876	4650	4271	4271	10371	10371					0.06838281303225813
ETLHSLDPME	10	Unmodified	_ETLHSLDPME_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.7925415039062	2	586.268621	1170.52269	0.14951	8.7651E-05	-1.8103	-0.0010613	-1.6608	-0.00097368	586.2671088234902	52.149	0.56387	52.148	51.876	52.44	-0.00081253					43	20	3	0	0	0	0.30093	1	12220	12220		21.537	1.1224	1	266280	+		7877	17936	4272	4272	10372	10372					-0.055751360874864986
ETLRLFDFL	9	Unmodified	_ETLRLFDFL_					0	0	0			REV__nc|ENSG00000168268|Q9H857-4|NT5DC2	REV__nc|ENSG00000168268|Q9H857-4|NT5DC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.7879028320312	2	577.316232	1152.61791	0.48776	0.00028159	-0.39927	-0.0002305	0.088489	5.1086E-05	577.3160555913611	56.525	0.48265	56.525	56.316	56.799	0					30	17	2	0	0	0	0.22596	1	13572	13572		21.747	0.20967	1	413850	+		7878	17449	4273	4273	10373	10373					0.04770585165852026
ETLRLFDFL	9	Unmodified	_ETLRLFDFL_					0	0	0			REV__nc|ENSG00000168268|Q9H857-4|NT5DC2	REV__nc|ENSG00000168268|Q9H857-4|NT5DC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.7877807617188	2	577.316232	1152.61791	0.75691	0.00043698	-0.49611	-0.00028641	0.26081	0.00015057	577.3159787840145	56.352	0.32127	56.431	56.331	56.652	0.078674					16	11	2	0	0	0	0.23784	1	13554	13554		19.257	3.1079	1	393340	+		7879	17449	4273	4273	10374	10374					0.04770585165852026
ETQKKTKDPRW	11	Unmodified	_ETQKKTKDPRW_					0	0	0			REV__ENSG00000119720|ENST00000354366|NRDE2	REV__ENSG00000119720|ENST00000354366|NRDE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.291748046875	3	472.924647	1415.75211	0.29952	0.00014165	-0.61681	-0.00029171	-0.31729	-0.00015005	472.9242994237091	29.298	0.98339	29.298	28.817	29.801	0					79	35	3	0	0	0	0.3331	1	5259	5259		2.2527	2.2527	1	516040	+		7880	15056	4274	4274	10375	10375					0.06086618920608089
ETRRKTLA	8	Unmodified	_ETRRKTLA_					0	0	0		ENST00000391759.5_2_19:54618744-54618972:-|nuORF	ENST00000391759.5_2_19:54618744-54618972:-|nuORF	ENST00000391759.5_2_19:54618744-54618972:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7908935546875	2	487.790715	973.566878	0.24343	0.00011874	0.49529	0.0002416	0.73872	0.00036034	487.7907981143787	74.006	2.99	74.058	73.198	76.188	0.052361					206	107	2	0	0	0	0.45169	1	18844	18844		5.2307	0.90143	1	5281400			7881	10024	4275	4275	10376	10376					0.07903680911658739
ETRSSKFH	8	Unmodified	_ETRSSKFH_					0	0	0			REV__ENST00000369232.2_1_6:99949817-99958096:-|nuORF	REV__ENST00000369232.2_1_6:99949817-99958096:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2401428222656	2	496.251423	990.488293	0.21029	0.00010436	-0.11933	-5.9219E-05	0.090956	4.5137E-05	496.2513286194511	24.446	0.62269	24.407	24.166	24.789	-0.038927					38	21	2	0	0	0	0.45942	1	3858	3858		2.5775	0.27475	1	216630	+		7882	15194	4276	4276	10377	10377					-0.007331713934263462
ETRSSSPL	8	Unmodified	_ETRSSSPL_					0	0	0			REV__nc|ENSG00000120899|Q14289-2|PTK2B	REV__nc|ENSG00000120899|Q14289-2|PTK2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.7265930175781	2	438.724707	875.43486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.75	1	78.719	78.219	79.219	-0.030434								0	0	0	0.35466	1	20372	20372		12.532	0	1		+		7883	15100	4277	4277	10378	10378					-0.00783968895950693
ETSAEAEPVDR	11	Unmodified	_ETSAEAEPVDR_					0	0	0			REV__nc|ENSG00000153820|Q2M3C7-2|SPHKAP	REV__nc|ENSG00000153820|Q2M3C7-2|SPHKAP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.2893676757812	2	602.278032	1202.54151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.731	1	46.731	46.231	47.231	0								0	0	0	0.30385	1	10554	10554		18.373	0	1		+		7884	16635	4278	4278	10379	10379					-0.05165883192103138
ETSAEAEPVDR	11	Unmodified	_ETSAEAEPVDR_					0	0	0			REV__nc|ENSG00000153820|Q2M3C7-2|SPHKAP	REV__nc|ENSG00000153820|Q2M3C7-2|SPHKAP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.28955078125	2	602.278032	1202.54151	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.569	1	46.622	46.122	47.122	0.052574								0	0	0	0.30385	1	10503	10503		18.373	0	1		+		7885	16635	4278	4278	10380	10380					-0.05165883192103138
ETSKERSSDSL	11	Unmodified	_ETSKERSSDSL_					0	0	0			REV__ENST00000559153.5_1_15:40845956-40846070:-|nuORF	REV__ENST00000559153.5_1_15:40845956-40846070:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.2147216796875	3	413.533484	1237.57862	0.030481	1.2605E-05	-0.13464	-5.5677E-05	-0.10416	-4.3072E-05	413.53388435823257	18.026	0.46094	17.968	17.738	18.199	-0.058331					29	16	3	0	0	0	0.43198	1	1808	1808		7.0371	1.2537	1	34752	+		7886	22287	4279	4279	10381	10381					-0.03066211646296324
ETSMGFSS	8	Unmodified	_ETSMGFSS_					0	0	0		MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant;MGA|p.R2396Qfs*8|1|0.14|ENSG00000174197|chr15:41757835-41757835|G/-|frameshift_variant;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;MGA|p.Q992Rfs*2|1|0.24|ENSG00000174197|chr15:41711239-41711239|C/-|frameshift_variant	MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant	MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.59765625	2	423.170918	844.327284	0.012139	5.1369E-06	-1.655	-0.00070033	-1.6428	-0.00069519	423.1702393521152	97.271	0.20441	97.265	97.175	97.379	-0.0055466					28	18	2	0	0	0	0.344	1	26047	26047		0.69038	0.088878	1	87349			7887	6777	4280	4280	10382	10382					-0.10110681821674916
ETTLALSPPRN	11	Unmodified	_ETTLALSPPRN_					0	0	0		COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1;ENST00000432943.6_1_8:121160081-121289735:+|nuORF;nc|ENSG00000187955|Q05707-3|COL14A1	COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant	COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.863525390625	2	599.824952	1197.63535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.052	1	12.052	11.552	12.552	0								0	0	0	0.38137	1	11	11		1.0715	0.5467	1				7888	195	4281	4281	10383	10383					0.04443880700864611
ETVAYVHPPV	10	Unmodified	_ETVAYVHPPV_					0	0	0			REV__nc|ENSG00000105357|Q7Z406-5|MYH14	REV__nc|ENSG00000105357|Q7Z406-5|MYH14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3131713867188	2	556.292756	1110.57096	0.54979	0.00030585	-0.37283	-0.0002074	0.17696	9.8442E-05	556.2924827082538	55.486	0.66109	55.557	55.297	55.958	0.070885					63	24	3	0	0	0	0.29978	1	13256	13256		20.454	20.454	1	1240200	+		7889	14451	4282	4282	10384	10384					0.02009725614720992
ETVLTYFNK	9	Unmodified	_ETVLTYFNK_					0	0	0			REV__ENSG00000272674|ENST00000609684|PCDHB16	REV__ENSG00000272674|ENST00000609684|PCDHB16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3130493164062	2	557.792589	1113.57063	0.31004	0.00017294	0.74842	0.00041746	1.0585	0.0005904	557.7930181266919	55.579	0.78812	55.559	55.29	56.078	-0.019077					66	28	4	0	0	0	0.21303	1	13348	13348		21.747	1.3321	1	1887400	+		7890	13909	4283	4283	10385	10385					0.01838305894852965
ETVRETFMKV	10	Unmodified	_ETVRETFMKV_					0	0	0			REV__ENST00000591348.5_1_1:16810902-16817558:-|nuORF	REV__ENST00000591348.5_1_1:16810902-16817558:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5502014160156	3	413.884913	1238.63291	0.21745	9.0001E-05	-0.45966	-0.00019025	-0.24221	-0.00010025	414.21905197970443	22.322	0.52757	22.222	21.944	22.471	-0.10034					59	19	4	0	0	0	0.31867	1	3148	3148		2.8433	0	1	390050	+		7891	22564	4284	4284	10386	10386					0.023137089715191905
ETWGPATPR	9	Unmodified	_ETWGPATPR_					0	0	0		nc|ENSG00000266733|Q9UFV1|TBC1D29P	nc|ENSG00000266733|Q9UFV1|TBC1D29P	nc|ENSG00000266733|Q9UFV1|TBC1D29P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.81884765625	2	507.753798	1013.49304	-0.022041	-1.1191E-05	-0.8342	-0.00042357	-0.85624	-0.00043476	508.25408423632473	13.075	0.14092	13.075	12.977	13.118	0					6	4	2	0	0	0	0.26031	1	319	319		3.5965	0.60125	1	9774			7892	12989	4285	4285	10387	10387					-0.013162872506654821
ETWPGILS	8	Unmodified	_ETWPGILS_					0	0	0		ENST00000428400.5_1_X:47085983-47086499:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16	ENST00000428400.5_1_X:47085983-47086499:+|nuORF	ENST00000428400.5_1_X:47085983-47086499:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.9328308105469	2	451.734543	901.454533	0.24815	0.0001121	0.01702	7.6885E-06	0.26517	0.00011979	451.73456581065966	88.87	0.76843	88.96	88.521	89.29	0.090569					48	32	2	0	0	0	0.3366	1	23464	23464		18.135	0	1	191690			7893	1755	4286	4286	10388	10388					-0.00013592885170510272
ETWPGILS	8	Unmodified	_ETWPGILS_					0	0	0		ENST00000428400.5_1_X:47085983-47086499:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16	ENST00000428400.5_1_X:47085983-47086499:+|nuORF	ENST00000428400.5_1_X:47085983-47086499:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.93280029296875	2	451.734543	901.454533	0.28241	0.00012758	-0.043867	-1.9816E-05	0.23855	0.00010776	451.73454659151366	88.973	1.0099	88.972	88.585	89.595	-0.00080872					65	45	2	0	0	0	0.32435	1	23512	23512		23.148	23.148	1	239690			7894	1755	4286	4286	10389	10389					-0.00013592885170510272
ETYNKRHLK	9	Unmodified	_ETYNKRHLK_					0	0	0		ENST00000592124.1_1_19:34756504-34790780:+|nuORF;ENST00000299505.6_1_19:34745491-34790780:+|nuORF	ENST00000592124.1_1_19:34756504-34790780:+|nuORF	ENST00000592124.1_1_19:34756504-34790780:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8276977539062	2	594.827829	1187.64111	0.10582	6.2945E-05	-0.14015	-8.3365E-05	-0.034329	-2.042E-05	594.8277094143297	12.563	0.49296	12.563	12.433	12.925	0					22	15	2	0	0	0	0.18208	1	166	166		26.268	4.7312	1	311200			7895	9214	4287	4287	10390	10390					0.05479024003170707
ETYNKRHLK	9	Unmodified	_ETYNKRHLK_					0	0	0		ENST00000592124.1_1_19:34756504-34790780:+|nuORF;ENST00000299505.6_1_19:34745491-34790780:+|nuORF	ENST00000592124.1_1_19:34756504-34790780:+|nuORF	ENST00000592124.1_1_19:34756504-34790780:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.827880859375	2	594.827829	1187.64111	0.17915	0.00010657	-0.20093	-0.00011952	-0.021779	-1.2955E-05	594.8277085880536	12.57	0.37564	12.474	12.356	12.731	-0.096607					31	12	4	0	0	0	0.17277	2	180	165;180		27.629	6.0918	1	318100			7896	9214	4287	4287	10391;10392	10392					0.05479024003170707
ETYNKRHLK	9	Unmodified	_ETYNKRHLK_					0	0	0		ENST00000592124.1_1_19:34756504-34790780:+|nuORF;ENST00000299505.6_1_19:34745491-34790780:+|nuORF	ENST00000592124.1_1_19:34756504-34790780:+|nuORF	ENST00000592124.1_1_19:34756504-34790780:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	594.827829	1187.64111	-0.031779	-1.8903E-05	0.40027	0.00023809	0.36849	0.00021919	594.8281128269842	12.599	0.58734	12.531	12.406	12.993	-0.067559	0.0086271	0.00058025	NaN	27.629	42	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316070			7897	9214	4287	4287							0.05479024003170707
EVADDENL	8	Unmodified	_EVADDENL_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.69866943359375	2	452.698355	903.382156	-0.071294	-3.2274E-05	1.0517	0.00047612	0.98044	0.00044384	452.69871562205174	61.099	0.69382	61.196	61.065	61.759	0.096985					42	25	2	0	0	0	0.4354	1	15074	15074		10.824	0	1	580480	+		7898	22992	4288	4288	10393	10393					-0.07339971749422602
EVADDENL	8	Unmodified	_EVADDENL_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.69866943359375	2	452.698355	903.382156	-0.036121	-1.6352E-05	0.78127	0.00035368	0.74515	0.00033733	452.6986734067072	61.221	0.76478	61.211	61.046	61.81	-0.0094566					41	27	2	0	0	0	0.42077	1	15063	15063		15.847	1.0089	1	565010	+		7899	22992	4288	4288	10394	10394					-0.07339971749422602
EVADDENL	8	Unmodified	_EVADDENL_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	452.698355	903.382156	-0.015456	-6.9971E-06	1.0096	0.00045705	0.99417	0.00045006	452.69871801105404	61.285	0.65159	61.285	61.103	61.755	0	0.054549	8.5964E-05	NaN	15.847	43	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334170	+		7900	22992	4288	4288							-0.07339971749422602
EVADDENL	8	Unmodified	_EVADDENL_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	452.698355	903.382156	-0.036121	-1.6352E-05	0.78127	0.00035368	0.74515	0.00033733	452.6986734067072	61.221	0.76478	61.211	61.046	61.81	-0.0094566	-0.019642	-0.00012079	NaN	15.847	41	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565010	+		7901	22992	4288	4288							-0.07339971749422602
EVALANRGTS	10	Unmodified	_EVALANRGTS_					0	0	0			REV__ENST00000540714.1_1_9:5919686-5933837:-|nuORF	REV__ENST00000540714.1_1_9:5919686-5933837:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.30615234375	2	509.269813	1016.52507	-0.00082008	-4.1764E-07	-0.1759	-8.9582E-05	-0.17672	-8.9999E-05	509.7709222740331	12.353	0.31542	12.256	12.094	12.409	-0.096607					16	10	2	0	0	0	0.32033	1	146	146		3.5965	1.2938	1	32515	+		7902	18258	4289	4289	10395	10395					0.017470804324716482
EVAMIPEL	8	Unmodified	_EVAMIPEL_					0	0	0			REV__nc|ENSG00000168827|Q96RP9-2|GFM1	REV__nc|ENSG00000168827|Q96RP9-2|GFM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.6002502441406	2	451.238604	900.462655	0.23676	0.00010683	-0.13317	-6.0092E-05	0.10359	4.6742E-05	451.23855827778385	56.985	0.79425	57.064	56.603	57.397	0.078674					45	29	2	0	0	0	0.29855	1	13596	13596		24.674	0	1	231090	+		7903	17483	4290	4290	10396	10396					0.008442180399129029
EVANIEER	8	Unmodified	_EVANIEER_					0	0	0		nc|ENSG00000151849|Q9HC77-2|CENPJ;CENPJ|p.A1212Vfs*27|1|0.07|ENSG00000151849|chr13:24884229-24884230|-/ACTGTTAAAAA|frameshift_variant;ENSG00000151849|ENST00000381884|CENPJ	nc|ENSG00000151849|Q9HC77-2|CENPJ	nc|ENSG00000151849|Q9HC77-2|CENPJ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2558898925781	2	480.243264	958.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.093	1	70.093	69.593	70.593	0								0	0	0	0.31323	1	17747	17747		26.884	3.7352	1				7904	106	4291	4291	10397	10397					-0.008922973501967135
EVCEESEWEK	10	Unmodified	_EVCEESEWEK_					0	0	0			REV__nc|ENSG00000139304|Q9UMZ3|PTPRQ	REV__nc|ENSG00000139304|Q9UMZ3|PTPRQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.8636779785156	3	423.176421	1266.50743	-0.25184	-0.00010657	3.4577	0.0014632	3.2059	0.0013567	423.1777592178327	31.451	0.22737	31.494	31.347	31.574	0.042366					10	7	2	0	0	0	0.31969	1	5893	5893		3.3196	0.82116	1	91491	+		7905	15980	4292	4292	10398	10398					-0.11516047675354457
EVDELLRTFL	10	Unmodified	_EVDELLRTFL_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.5487976074219	3	412.227444	1233.6605	-0.10459	-4.3113E-05	-0.70803	-0.00029187	-0.81262	-0.00033498	412.22694977462214	16.765	1.1983	16.765	16.491	17.69	0					66	41	3	0	0	0	0.35267	1	1457	1457		12.175	4.2293	1	306000	+		7906	13757	4293	4293	10399	10399					0.05301935503439381
EVDELLRTFL	10	Unmodified	_EVDELLRTFL_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.5486755371094	3	412.227444	1233.6605	0.01234	5.087E-06	-0.14997	-6.1821E-05	-0.13763	-5.6734E-05	412.22712025278906	16.903	1.185	16.789	16.421	17.606	-0.11434					79	42	4	0	0	0	0.35267	1	1514	1514		12.175	4.2293	1	272790	+		7907	13757	4293	4293	10400	10400					0.05301935503439381
EVDFRHKYF	9	Unmodified	_EVDFRHKYF_					0	0	0			REV__ENST00000380738.8_1_9:15465400-15465454:-|nuORF	REV__ENST00000380738.8_1_9:15465400-15465454:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.2094421386719	3	414.208495	1239.60366	-0.19403	-8.0371E-05	3.0561	0.0012659	2.8621	0.0011855	414.2104739337982	25.799	2.7397	25.799	25.413	28.153	0					347	95	6	0	0	0	0.25989	2	4429	4429;4526		10.151	1.1743	1	37678000	+		7908	20554	4294	4294	10401;10402	10401					-0.006560672624345898
EVDVQARDLGP	11	Unmodified	_EVDVQARDLGP_					0	0	0		ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.8073120117188	2	599.806759	1197.59897	0.64411	0.00038634	-1.3003	-0.00077992	-0.65617	-0.00039357	599.8060443342531	20.26	0.50359	20.15	19.846	20.35	-0.11003					29	18	2	0	0	0	0.46969	1	2507	2507		2.086	0	1	112140			7909	2511	4295	4295	10403	10403					0.008070038041296357
EVEAMRKEL	9	Unmodified	_EVEAMRKEL_					0	0	0			REV__nc|ENSG00000088325|Q9ULW0-2|TPX2	REV__nc|ENSG00000088325|Q9ULW0-2|TPX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7891235351562	2	552.789524	1103.56449	0.45154	0.00024961	-1.3031	-0.00072033	-0.85154	-0.00047072	552.7888306774906	48.908	1.0157	48.953	48.629	49.645	0.044891					73	36	3	0	0	0	0.18208	1	11231	11231		26.268	3.5319	1	1302400	+		7910	14006	4296	4296	10404	10404					0.016854643916758505
EVEGTGAGATF	11	Unmodified	_EVEGTGAGATF_					0	0	0			REV__ENSG00000196924|ENST00000369850|FLNA	REV__ENSG00000196924|ENST00000369850|FLNA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7666015625	2	519.740554	1037.46655	0.49837	0.00025902	-1.3199	-0.000686	-0.82152	-0.00042698	519.7400544471327	43.338	0.71351	43.416	43.023	43.736	0.077515					37	25	2	0	0	0	0.24515	1	9495	9495		39.95	10.868	1	353100	+		7911	18696	4297	4297	10405	10405					-0.050680209326628756
EVEGTGAGATF	11	Unmodified	_EVEGTGAGATF_					0	0	0			REV__ENSG00000196924|ENST00000369850|FLNA	REV__ENSG00000196924|ENST00000369850|FLNA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7666015625	2	519.740554	1037.46655	0.34053	0.00017698	-0.97947	-0.00050907	-0.63894	-0.00033209	519.7400084832651	43.356	0.81384	43.44	42.896	43.71	0.083992					42	29	2	0	0	0	0.26547	1	9527	9527		34.402	9.0024	1	346060	+		7912	18696	4297	4297	10406	10406					-0.050680209326628756
EVEHLLQR	8	Unmodified	_EVEHLLQR_					0	0	0			REV__nc|ENSG00000177398|Q5DID0-3|UMODL1	REV__nc|ENSG00000177398|Q5DID0-3|UMODL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.27099609375	2	512.282723	1022.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.813	1	96.884	96.384	97.384	0.070465								0	0	0	0.37078	1	25890	25890		5.2307	0	1		+		7913	17986	4298	4298	10407	10407					0.04051974674769099
EVELYLEKLK	10	Unmodified	_EVELYLEKLK_					0	0	0		nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A;ENST00000562946.5_1_15:42519884-42565596:-|nuORF;TMEM87A|p.G263Vfs*32|1|0.14|ENSG00000103978|chr15:42237512-42237512|C/-|frameshift_variant;ENST00000569075.5_1_15:42525398-42565582:-|nuORF;ENST00000563371.5_1_15:42553198-42564267:-|nuORF;nc|ENSG00000103978|Q8NBN3-2|TMEM87A	nc|ENSG00000103978|Q8NBN3-3|TMEM87A	nc|ENSG00000103978|Q8NBN3-3|TMEM87A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2567443847656	3	421.911345	1262.7122	-0.20172	-8.5107E-05	1.5633	0.00065958	1.3616	0.00057448	421.9121124848097	16.438	0.25196	16.324	16.11	16.362	-0.11434					9	8	2	0	0	0	0.31745	1	1312	1312		5.0475	1.9753	1	13625			7914	1858	4299	4299	10408	10408					0.0913567919731122
EVEMEEWIT	9	Unmodified	_EVEMEEWIT_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.8502807617188	2	583.257722	1164.50089	-0.16411	-9.572E-05	-3.1646	-0.0018458	-3.3287	-0.0019415	583.2562962212604	61.76	0.25768	61.857	61.638	61.896	0.096985					9	8	2	0	0	0	0.24311	1	15149	15149		16.942	2.104	1	63755			7915	1324	4300	4300	10409	10409					-0.07477940836088237
EVERNIEMV	9	Unmodified	_EVERNIEMV_					0	0	0			REV__ENSG00000148513|ENST00000361713|ANKRD30A;REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.7800903320312	2	559.779156	1117.54376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.876	1	76.931	76.431	77.431	0.055016								0	0	0	0.20238	1	19809	19809		21.747	3.6003	1		+		7916	18118;16427	4301	4301	10410	10410					-0.010311259879699719
EVFFRRRHF	9	Unmodified	_EVFFRRRHF_					0	0	0		ENST00000462039.5_1_6:74192220-74192271:+|nuORF	ENST00000462039.5_1_6:74192220-74192271:+|nuORF	ENST00000462039.5_1_6:74192220-74192271:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.22711181640625	3	431.903629	1292.68906	-0.047201	-2.0386E-05	1.6135	0.00069689	1.5663	0.00067651	431.9041746882625	22.089	0.52085	21.989	21.657	22.178	-0.10034					45	18	3	0	0	0	0.26245	1	3097	3097		0.96228	0	1	139890			7917	10752	4302	4302	10411	10411					0.05442142713877729
EVFGVIAVVV	10	Unmodified	_EVFGVIAVVV_					0	0	0			REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF	REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.3099975585938	2	516.310418	1030.60628	0.74313	0.00038369	-0.69276	-0.00035768	0.050366	2.6005E-05	516.3099353724656	78.301	1.4076	78.301	77.93	79.338	0					146	55	4	0	0	0	0.23848	1	20259	20259		30.637	0	1	3922900	+		7918	21390	4303	4303	10412	10412					0.09220388142512093
EVFGVIAVVV	10	Unmodified	_EVFGVIAVVV_					0	0	0			REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF	REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.3106079101562	2	516.310418	1030.60628	0.55871	0.00028847	-0.45653	-0.00023571	0.10218	5.2757E-05	516.3100637035338	78.268	1.3624	78.326	77.927	79.289	0.058151					153	54	4	0	0	0	0.2291	1	20182	20182		39.957	7.1716	1	4577100	+		7919	21390	4303	4303	10413	10413					0.09220388142512093
EVFGVIAVVV	10	Unmodified	_EVFGVIAVVV_					0	0	0			REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF	REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.310546875	2	516.310418	1030.60628	0.7098	0.00036648	-0.63566	-0.0003282	0.074141	3.828E-05	516.3099798268021	78.365	1.4211	78.334	77.926	79.347	-0.030434					156	56	4	0	0	0	0.25875	1	20212	20212		32.305	3.2239	1	4159700	+		7920	21390	4303	4303	10414	10414					0.09220388142512093
EVFKEYLIELF	11	Unmodified	_EVFKEYLIELF_					0	0	0		nc|ENSG00000185684|Q6ZTU2-5|EP400P1;nc|ENSG00000185684|Q6ZTU2-2|EP400P1;nc|ENSG00000185684|Q6ZTU2|EP400P1;nc|ENSG00000185684|Q6ZTU2-6|EP400P1;nc|ENSG00000185684|Q6ZTU2-4|EP400P1;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400	nc|ENSG00000185684|Q6ZTU2-5|EP400P1;nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7242126464844	3	477.258633	1428.75407	0.47455	0.00022648	1.5481	0.00073884	2.0226	0.00096533	477.2600247904871	56.611	0.65998	56.69	56.437	57.097	0.078671					57	24	4	0	0	0	0.3322	1	13695	13695		4.7159	0.30977	1	749880			7921	7371;12879	4304	4304	10415	10415					0.0568423488582539
EVFKRPTK	8	Unmodified	_EVFKRPTK_					0	0	0			REV__nc|ENSG00000148337|Q9ULV3-5|CIZ1	REV__nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2805480957031	2	502.798009	1003.58147	0.36828	0.00018517	-0.56108	-0.00028211	-0.1928	-9.694E-05	502.7976886125548	37.396	0.56467	37.489	37.275	37.84	0.093018					38	20	3	0	0	0	0.32099	1	7791	7791		25.399	1.3787	1	261970	+		7922	16420	4305	4305	10416	10416					0.07981753059800667
EVFRFAYYK	9	Unmodified	_EVFRFAYYK_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A;ENST00000414276.6_1_1:150239820-150241394:-|nuORF;ENST00000461320.5_1_1:150239547-150241394:-|nuORF	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.2133483886719	3	408.213358	1221.61824	0.16975	6.9292E-05	-0.16992	-6.9364E-05	-0.00017481	-7.136E-08	408.5475455713789	48.114	0.70191	48.114	47.934	48.636	0					53	24	3	0	0	0	0.23767	1	11042	11042		12.873	4.7171	1	1148600			7923	2790	4306	4306	10417	10417					0.016300048857146976
EVFRFAYYK	9	Unmodified	_EVFRFAYYK_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A;ENST00000414276.6_1_1:150239820-150241394:-|nuORF;ENST00000461320.5_1_1:150239547-150241394:-|nuORF	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.828857421875	2	611.816399	1221.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.275	1	48.275	47.775	48.775	0								0	0	0	0.11882	1	11033	11033		41.956	12.115	1				7924	2790	4306	4306	10418	10418					0.016300048857146976
EVFRFAYYK	9	Unmodified	_EVFRFAYYK_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A;ENST00000414276.6_1_1:150239820-150241394:-|nuORF;ENST00000461320.5_1_1:150239547-150241394:-|nuORF	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.2132568359375	3	408.213358	1221.61824	0.41992	0.00017142	-0.326	-0.00013308	0.093919	3.8339E-05	408.2131584918077	48.067	0.74789	48.114	47.945	48.693	0.047523					55	27	3	0	0	0	0.11461	1	10996	10996		27.223	17.459	1	1175700			7925	2790	4306	4306	10419	10419					0.016300048857146976
EVFRFAYYK	9	Unmodified	_EVFRFAYYK_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A;ENST00000414276.6_1_1:150239820-150241394:-|nuORF;ENST00000461320.5_1_1:150239547-150241394:-|nuORF	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.2131652832031	3	408.213358	1221.61824	0.25614	0.00010456	0.035072	1.4317E-05	0.29121	0.00011888	408.21313279307316	48.066	0.76952	48.109	47.902	48.672	0.043324					72	28	3	0	0	0	0.25163	1	10977	10977		8.9762	5.3892	1	1190400			7926	2790	4306	4306	10420	10420					0.016300048857146976
EVFVKPFIGV	10	Unmodified	_EVFVKPFIGV_					0	0	0			REV__nc|ENSG00000116701|P19878-4|NCF2	REV__nc|ENSG00000116701|P19878-4|NCF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2615356445312	2	567.831517	1133.64848	0.18084	0.00010269	-0.58363	-0.0003314	-0.40279	-0.00022872	567.8312306533837	98.306	0.19279	98.367	98.245	98.438	0.061523					27	20	2	0	0	0	0.31629	1	26299	26299		10.074	10.074	1	152160	+		7927	14932	4307	4307	10421	10421					0.08700363550883594
EVGLHEMHI	9	Unmodified	_EVGLHEMHI_					0	0	0		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.8110961914062	2	532.763309	1063.51206	0.598	0.00031859	-0.4713	-0.00025109	0.12671	6.7505E-05	532.7626769332909	65.772	0.46498	65.86	65.704	66.169	0.088882					25	16	2	0	0	0	0.2451	1	16461	16461		10.824	3.5347	1	172330			7928	3941	4308	4308	10422	10422					-0.017150739512771906
EVHLPEIF	8	Unmodified	_EVHLPEIF_					0	0	0		ENSG00000163376|ENST00000417314|KBTBD8	ENSG00000163376|ENST00000417314|KBTBD8	ENSG00000163376|ENST00000417314|KBTBD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.8262939453125	2	492.263468	982.512382	0.26181	0.00012888	-0.71266	-0.00035082	-0.45085	-0.00022193	492.2628356966456	61.697	0.90416	61.697	61.437	62.341	0					42	33	2	0	0	0	0.31375	1	15168	15168		19.439	0	1	173960			7929	5671	4309	4309	10423	10423					0.020426690402246095
EVILRSLGF	9	Unmodified	_EVILRSLGF_					0	0	0			REV__nc|ENSG00000182541|P53671-3|LIMK2	REV__nc|ENSG00000182541|P53671-3|LIMK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.790771484375	2	517.305667	1032.59678	0.3849	0.00019911	-0.12415	-6.4221E-05	0.26076	0.00013489	517.3056223851987	60.425	0.66595	60.425	60.126	60.792	0					59	24	3	0	0	0	0.24739	1	14877	14877		13.508	0.97634	1	1977000	+		7930	23123	4310	4310	10424	10424					0.08178619856994374
EVISEMCPN	9	Unmodified	_EVISEMCPN_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.83197021484375	2	511.220085	1020.42562	0.54918	0.00028075	0.20179	0.00010316	0.75098	0.00038391	511.2187457134257	66.075	0.11765	66.075	66.007	66.124	0					5	3	2	0	0	0	0.24913	1	16528	16528		12.532	0	1	53466			7931	2422	4311	4311	10425	10425					-0.08377821568149102
EVISLKLNF	9	Unmodified	_EVISLKLNF_					0	0	0		ENST00000383314.6_1_18:13760267-13760498:+|nuORF	ENST00000383314.6_1_18:13760267-13760498:+|nuORF	ENST00000383314.6_1_18:13760267-13760498:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3036499023438	2	531.813325	1061.6121	0.41356	0.00021994	1.5334	0.00081549	1.947	0.0010354	532.3154578962524	58.864	0.53024	58.955	58.708	59.238	0.091305					46	18	3	0	0	0	0.24471	1	14235	14235		12.241	5.5175	1	581790			7932	10014	4312	4312	10426	10426					0.08375486654176711
EVISLKLNF	9	Unmodified	_EVISLKLNF_					0	0	0		ENST00000383314.6_1_18:13760267-13760498:+|nuORF	ENST00000383314.6_1_18:13760267-13760498:+|nuORF	ENST00000383314.6_1_18:13760267-13760498:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3035888671875	2	531.813325	1061.6121	0.54906	0.000292	1.048	0.00055736	1.5971	0.00084936	532.3151383309247	58.949	0.41864	58.934	58.777	59.196	-0.014271					37	14	3	0	0	0	0.22143	1	14302	14302		19.362	4.5237	1	486050			7933	10014	4312	4312	10427	10427					0.08375486654176711
EVIYAVEAF	9	Unmodified	_EVIYAVEAF_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2761840820312	2	520.768583	1039.52261	0.45675	0.00023786	0.37772	0.00019671	0.83447	0.00043457	520.768182085799	82.014	0.21544	82.014	81.894	82.11	0					9	7	2	0	0	0	0.24311	1	21370	21370		16.942	9.0321	1	83599	+		7934	15386	4313	4313	10428	10428					0.00443231974804803
EVKARLQPY	9	Unmodified	_EVKARLQPY_					0	0	0		APOA5|p.K335Qfs*12|1|0.28|ENSG00000110243|chr11:116790227-116790228|-/C|frameshift_variant;ENSG00000110243|ENST00000227665|APOA5	APOA5|p.K335Qfs*12|1|0.28|ENSG00000110243|chr11:116790227-116790228|-/C|frameshift_variant	APOA5|p.K335Qfs*12|1|0.28|ENSG00000110243|chr11:116790227-116790228|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.3480224609375	2	552.314023	1102.61349	0.20849	0.00011515	-3.4434	-0.0019019	-3.235	-0.0017867	552.3122885531997	26.138	0.42059	26.138	25.9	26.321	0					23	14	2	0	0	0	0.34681	1	4202	4202		1.8442	0	1	55346			7935	49	4314	4314	10429	10429					0.06629120742968553
EVKEFTWHKS	10	Unmodified	_EVKEFTWHKS_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8884582519531	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.15	1	29.162	28.662	29.662	0.012266								0	0	0	0.35421	1	5180	5180		7.9454	4.0995	1		+		7936	13706	4315	4315	10430	10430					0.0072018456346540916
EVKEMFLE	8	Unmodified	_EVKEMFLE_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2;YTHDC2|p.L804*|1|0.43|ENSG00000047188|chr5:113563461-113563468|TAATTGTA/-|frameshift_variant	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2830200195312	2	512.754618	1023.49468	-0.090065	-4.6181E-05	-4.2485	-0.0021784	-4.3386	-0.0022246	513.2544024598416	18.851	0.33037	18.793	18.57	18.901	-0.058172					19	11	2	0	0	0	0.32099	1	2073	2073		25.399	0	1	51285			7937	626	4316	4316	10431	10431					-0.016124142769285754
EVKIAYVNF	9	Unmodified	_EVKIAYVNF_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7694091796875	2	541.797675	1081.5808	0.56303	0.00030505	-0.26769	-0.00014503	0.29534	0.00016001	541.7973066523978	58.505	0.29048	58.596	58.418	58.708	0.091305					16	9	2	0	0	0	0.23784	1	14196	14196		19.257	2.3147	1	337040			7938	3087	4317	4317	10432	10432					0.04326913620070627
EVKRLKEFLE	10	Unmodified	_EVKRLKEFLE_					0	0	0			REV__ENST00000547000.1_1_12:101462478-101462640:+|nuORF	REV__ENST00000547000.1_1_12:101462478-101462640:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.2278137207031	3	430.918722	1289.73434	-0.24087	-0.00010379	-2.8217	-0.0012159	-3.0626	-0.0013197	430.9179103910702	23.104	0.50474	23.016	22.82	23.325	-0.087608					25	17	2	0	0	0	0.32068	1	3314	3314		3.5871	2.1319	1	80696	+		7939	14020	4318	4318	10433	10433					0.10105903665748883
EVKRLKEFLE	10	Unmodified	_EVKRLKEFLE_					0	0	0			REV__ENST00000547000.1_1_12:101462478-101462640:+|nuORF	REV__ENST00000547000.1_1_12:101462478-101462640:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.22784423828125	3	430.918722	1289.73434	-0.11389	-4.9076E-05	-2.9665	-0.0012783	-3.0804	-0.0013274	430.91768708012427	23.142	0.46008	23.097	22.898	23.358	-0.044867					31	16	3	0	0	0	0.32068	1	3317	3317		3.5871	0.5148	1	87746	+		7940	14020	4318	4318	10434	10434					0.10105903665748883
EVKSLRKELY	10	Unmodified	_EVKSLRKELY_					0	0	0			REV__ENSG00000176009|ENST00000531618|ASCL3	REV__ENSG00000176009|ENST00000531618|ASCL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.57489013671875	3	422.246839	1263.71869	0.0056192	2.3727E-06	-1.4839	-0.00062657	-1.4783	-0.0006242	422.24575911991786	19.664	1.0363	19.548	19.145	20.182	-0.11592					70	35	3	0	0	0	0.31746	1	2208	2208		9.544	0	1	118960	+		7941	17915	4319	4319	10435	10435					0.09737617148721256
EVKSLSILL	9	Unmodified	_EVKSLSILL_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2568359375	2	501.3157	1000.61685	0.31949	0.00016017	0.19622	9.837E-05	0.51571	0.00025854	501.31581253383973	66.832	0.53821	66.916	66.71	67.248	0.083832					30	18	2	0	0	0	0.24993	1	16687	16687		8.7454	1.4562	1	240540	+		7942	18848	4320	4320	10436	10436					0.1165637079697035
EVKYLLRE	8	Unmodified	_EVKYLLRE_					0	0	0			REV__ENST00000317216.2_1_8:22545460-22545559:-|nuORF	REV__ENST00000317216.2_1_8:22545460-22545559:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8316650390625	2	525.303124	1048.5917	0.56534	0.00029697	-0.60922	-0.00032003	-0.043882	-2.3051E-05	525.3026757197773	43.712	0.52816	43.796	43.492	44.02	0.083996					36	19	3	0	0	0	0.3415	1	9664	9664		13.042	0	1	625710	+		7943	19941	4321	4321	10437	10437					0.06934315994362805
EVLARWGAL	9	Unmodified	_EVLARWGAL_					0	0	0			REV__ENSG00000182327|ENST00000331264|GLTPD2	REV__ENSG00000182327|ENST00000331264|GLTPD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.78997802734375	2	507.790184	1013.56581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.292	1	59.292	58.792	59.792	0								0	0	0	0.19013	1	14428	14428		25.399	1.3787	1		+		7944	18191	4322	4322	10438	10438					0.05957466542747625
EVLDVVITK	9	Unmodified	_EVLDVVITK_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.3046875	2	508.305332	1014.59611	0.61525	0.00031274	-1.7434	-0.0008862	-1.1282	-0.00057346	508.30418419795853	50.024	1.2584	50.069	49.776	51.035	0.044891					94	46	3	0	0	0	0.23693	1	11615	11615		21.59	4.5036	1	1368100			7945	3087	4323	4323	10439	10439					0.08939780417279053
EVLDVVITK	9	Unmodified	_EVLDVVITK_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	508.305332	1014.59611	0.36355	0.00018479	-1.2923	-0.00065688	-0.92874	-0.00047209	508.3044626037571	50.035	0.98478	50.035	49.701	50.686	0	-0.014191	0.0002603	NaN	38.615	77	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1343700			7946	3087	4323	4323							0.08939780417279053
EVLDVVITK	9	Unmodified	_EVLDVVITK_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.305332	1014.59611	0.60471	0.00030738	-1.7292	-0.00087895	-1.1245	-0.00057157	508.3041852081066	50.023	1.3067	50.044	49.746	51.053	0.020691	-0.0055604	-0.00018384	NaN	38.615	94	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1443600			7947	3087	4323	4323							0.08939780417279053
EVLIRPSSEVI	11	Unmodified	_EVLIRPSSEVI_					0	0	0		ENST00000449387.1_1_11:28308937-28309159:-|nuORF	ENST00000449387.1_1_11:28308937-28309159:-|nuORF	ENST00000449387.1_1_11:28308937-28309159:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.2094421386719	3	414.574844	1240.7027	-0.10245	-4.2475E-05	-3.2747	-0.0013576	-3.3771	-0.0014001	414.90828213517113	26.852	0.41983	26.852	26.644	27.063	0					17	14	2	0	0	0	0.33122	1	4429	4429		7.0371	0.41363	1	30879			7948	10630	4324	4324	10440	10440					0.09197910911802865
EVLIYVFDV	9	Unmodified	_EVLIYVFDV_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENST00000498762.1_1_X:55748624-55758085:+|nuORF;ENST00000474757.1_1_X:55757854-55777647:+|nuORF	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3232421875	2	548.799883	1095.58521	-0.32481	-0.00017826	1.259	0.00069096	0.93423	0.00051271	548.8003810873914	35.287	0.5491	35.287	34.943	35.492	0					28	19	2	0	0	0	0.25066	1	7105	7105		11.64	0	1	122700			7949	1226	4325	4325	10441	10441					0.041243780430022525
EVLKEIPQRR	10	Unmodified	_EVLKEIPQRR_					0	0	0			REV__nc|ENSG00000143751|Q6IQ49-3|SDE2	REV__nc|ENSG00000143751|Q6IQ49-3|SDE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3789672851562	2	634.377686	1266.74082	0.22787	0.00014455	-0.18084	-0.00011472	0.047024	2.9831E-05	634.3777797867066	103.27	1.9164	103.27	102.78	104.7	0.0082703					426	271	3	0	0	0	0.40106	1	27779	27779		3.2813	0.28607	1	38547000	+		7950	23018	4326	4326	10442	10442					0.11811841617122809
EVLKEIPQRR	10	Unmodified	_EVLKEIPQRR_					0	0	0			REV__nc|ENSG00000143751|Q6IQ49-3|SDE2	REV__nc|ENSG00000143751|Q6IQ49-3|SDE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3789672851562	2	634.377686	1266.74082	0.22961	0.00014566	0.77695	0.00049288	1.0066	0.00063853	634.3784116531048	105.42	0.27999	105.42	105.24	105.52	-0.0027847					67	39	3	0	0	0	0.40106	1	27938	27938		3.2813	0.28607	1	116340	+		7951	23018	4326	4326	10443	10443					0.11811841617122809
EVLKEIPQRR	10	Unmodified	_EVLKEIPQRR_					0	0	0			REV__nc|ENSG00000143751|Q6IQ49-3|SDE2	REV__nc|ENSG00000143751|Q6IQ49-3|SDE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3778076171875	2	634.377686	1266.74082	0.45841	0.00029081	-0.49697	-0.00031527	-0.038558	-2.446E-05	634.3779395780009	105.21	0.44441	105.22	104.97	105.41	0.0031738					96	66	2	0	0	0	0.40106	2	27932	27898;27932		3.2813	0.28607	1	190430	+		7952	23018	4326	4326	10444;10445	10445					0.11811841617122809
EVLMAAPRFTK	11	Unmodified	_EVLMAAPRFTK_					0	0	0			REV__nc|ENSG00000091128|A4D0S4-3|LAMB4;REV__ENSG00000172037|ENST00000305544|LAMB2	REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.57745361328125	3	421.569036	1261.68528	-0.11213	-4.7269E-05	1.051	0.00044306	0.93886	0.00039579	421.5694231533343	15.968	0.13739	15.905	15.838	15.975	-0.062534					6	4	2	0	0	0	0.41517	1	1190	1190		9.2438	1.3977	1	15368	+		7953	14058;17687	4327	4327	10446	10446					0.06490292105127082
EVLRDRTWIE	10	Unmodified	_EVLRDRTWIE_					0	0	0		ENST00000416938.5_1_7:99704896-99705589:+|nuORF	ENST00000416938.5_1_7:99704896-99705589:+|nuORF	ENST00000416938.5_1_7:99704896-99705589:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.25299072265625	3	439.570093	1315.68845	0.010619	4.6677E-06	-0.019336	-8.4995E-06	-0.0087171	-3.8318E-06	439.5701192063635	25.173	0.45892	25.173	24.986	25.445	0					22	15	2	0	0	0	0.32082	1	3980	3980		3.3196	0.68841	1	39823			7954	10325	4328	4328	10447	10447					0.04323258483486825
EVLVHIPKQ	9	Unmodified	_EVLVHIPKQ_					0	0	0		nc|nan|Q8N9H9-2|C1orf127;nc|nan|Q8N9H9|C1orf127;ENSG00000175262|ENST00000377004|C1orf127	nc|nan|Q8N9H9-2|C1orf127	nc|nan|Q8N9H9-2|C1orf127	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8065795898438	2	531.818941	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.21	1	18.093	17.593	18.593	-0.11739								0	0	0	0.23367	1	1865	1865		11.64	0.81637	1				7955	6852	4329	4329	10448	10448					0.09498308748311501
EVLVMVVL	8	Unmodified	_EVLVMVVL_					0	0	0			REV__ENSG00000187010|ENST00000328664|RHD	REV__ENSG00000187010|ENST00000328664|RHD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.2748107910156	2	451.274989	900.535426	0.21179	9.5574E-05	-0.31765	-0.00014335	-0.10586	-4.7774E-05	451.27472433554397	70.999	0.79803	70.999	70.633	71.431	0					49	28	2	0	0	0	0.421	1	18062	18062		15.768	1.1865	1	931970	+		7956	18482	4330	4330	10449	10449					0.08117971833360116
EVLYRCLIIFF	11	Unmodified	_EVLYRCLIIFF_					0	0	0			REV__ENST00000460416.2_1_2:203881095-203914720:+|nuORF	REV__ENST00000460416.2_1_2:203881095-203914720:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.79217529296875	3	472.596703	1414.76828	-0.11914	-5.6306E-05	0.46376	0.00021917	0.34462	0.00016286	472.596625159765	27.618	0.90922	27.597	27.321	28.23	-0.021412					57	31	3	0	0	0	0.3299	1	4766	4766		9.7643	5.3581	1	156120	+		7957	21204	4331	4331	10450	10450					0.0774860883313977
EVMILMQL	8	Unmodified	_EVMILMQL_					0	0	0		ENSG00000163785|ENST00000623711|RYK;nc|ENSG00000163785|P34925-2|RYK	ENSG00000163785|ENST00000623711|RYK	ENSG00000163785|ENST00000623711|RYK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2502136230469	2	488.763932	975.51331	0.085732	4.1903E-05	-0.23426	-0.0001145	-0.14853	-7.2596E-05	488.7634774410262	18.147	0.48899	18.089	17.738	18.227	-0.058174					25	17	2	0	0	0	0.34218	1	1833	1833		9.3474	1.4373	1	39898			7958	5730	4332	4332	10451	10451					0.024574240932906832
EVNSGFFYK	9	Unmodified	_EVNSGFFYK_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;ENST00000482776.1_1_7:56124009-56126486:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.7642822265625	2	545.763832	1089.51311	0.71077	0.00038791	0.37963	0.00020719	1.0904	0.0005951	545.7639225875168	44.66	0.85475	44.66	44.436	45.291	0					78	30	4	0	0	0	0.023967	2	9910	9910;9962		62.573	20.733	1	1324400			7959	4724	4333	4333	10452;10453	10452					-0.02806536310708907
EVNSGFFYK	9	Unmodified	_EVNSGFFYK_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;ENST00000482776.1_1_7:56124009-56126486:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.7644653320312	2	545.763832	1089.51311	0.76198	0.00041586	0.14289	7.7984E-05	0.90487	0.00049385	545.7638779967311	44.397	0.78045	44.466	44.199	44.979	0.068573					78	28	4	0	0	0	0.012386	2	9809	9809;9855		75.761	75.761	1	1434000			7960	4724	4333	4333	10454;10455	10454					-0.02806536310708907
EVNSGFFYK	9	Unmodified	_EVNSGFFYK_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;nc|ENSG00000132141|Q92526-2|CCT6B;nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;ENST00000482776.1_1_7:56124009-56126486:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.7642211914062	2	545.763832	1089.51311	0.64468	0.00035184	0.13273	7.2442E-05	0.77741	0.00042428	545.7637798724735	44.331	0.89401	44.406	44.122	45.016	0.075047					82	32	4	0	0	0	0.018449	2	9795	9795;9845		66.457	66.457	1	1280000			7961	4724	4333	4333	10456;10457	10456					-0.02806536310708907
EVNYLLIL	8	Unmodified	_EVNYLLIL_					0	0	0			REV__ENST00000511884.6_2_4:31144591-31144774:+|nuORF	REV__ENST00000511884.6_2_4:31144591-31144774:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2489318847656	2	488.789318	975.564084	0.42575	0.0002081	2.3623	0.0011547	2.7881	0.0013628	488.79082909876206	88.68	0.71526	88.68	88.487	89.202	0					48	32	2	0	0	0	0.3366	1	23517	23517		18.135	5.6034	1	88929	+		7962	21814	4334	4334	10458	10458					0.075324127341446
EVPLKRQLK	9	Unmodified	_EVPLKRQLK_					0	0	0			REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF	REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.80078125	2	555.853316	1109.69208	-0.070676	-3.9285E-05	-0.067145	-3.7323E-05	-0.13782	-7.6608E-05	555.853431622436	35.308	0.27136	35.383	35.21	35.481	0.075306					13	9	2	0	0	0	0.25202	1	7073	7073		10.824	0.024421	1	94345	+		7963	15518	4335	4335	10459	10459					0.14161973048021537
EVPLKRQLKV	10	Unmodified	_EVPLKRQLKV_					0	0	0			REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF	REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.1906433105469	3	403.92744	1208.76049	-0.063583	-2.5683E-05	0.42596	0.00017206	0.36237	0.00014637	403.92738057774	30.573	0.39161	30.573	30.418	30.81	0					19	13	2	0	0	0	0.32051	1	5653	5653		3.8763	1.3778	1	90466	+		7964	15518	4336	4336	10460	10460					0.16446217627867554
EVPLTRKDAGS	11	Unmodified	_EVPLTRKDAGS_					0	0	0		nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A;ENSG00000151240|ENST00000280886|DIP2C	nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8338012695312	2	586.817127	1171.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.779	1	81.848	81.348	82.348	0.068993								0	0	0	0.33831	1	21308	21308		10.8	2.644	1				7965	4948;5458	4337	4337	10461	10461					0.04075594183791509
EVPLTRKDAGS	11	Unmodified	_EVPLTRKDAGS_					0	0	0		nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A;ENSG00000151240|ENST00000280886|DIP2C	nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8338623046875	2	586.817127	1171.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.554	1	82.627	82.127	83.127	0.073097								0	0	0	0.33831	1	21546	21546		10.8	2.0541	1				7966	4948;5458	4337	4337	10462	10462					0.04075594183791509
EVPLTRKDAGS	11	Unmodified	_EVPLTRKDAGS_					0	0	0		nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A;ENSG00000151240|ENST00000280886|DIP2C	nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.834228515625	2	586.817127	1171.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.737	1	81.713	81.213	82.213	-0.02404								0	0	0	0.33831	1	21287	21287		10.8	2.644	1				7967	4948;5458	4337	4337	10463	10463					0.04075594183791509
EVPQLAAAKRR	11	Unmodified	_EVPQLAAAKRR_					0	0	0		nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;nc|ENSG00000157212|Q6ZW49-2|PAXIP1;ENSG00000157212|ENST00000404141|PAXIP1;ENST00000475066.1_1_7:154759501-154775093:-|nuORF	nc|ENSG00000157212|Q6ZW49-1|PAXIP1	nc|ENSG00000157212|Q6ZW49-1|PAXIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3389282226562	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.242	1	98.242	97.742	98.742	0								0	0	0	0.37609	1	26281	26281		2.4985	1.0166	1				7968	10703	4338	4338	10464	10464					0.11614974819894996
EVPVEEHF	8	Unmodified	_EVPVEEHF_					0	0	0		ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant;ENSG00000166716|ENST00000560079|ZNF592	ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.2927551269531	2	493.234907	984.455261	-0.012949	-6.3869E-06	1.9071	0.00094062	1.8941	0.00093424	493.2357162679351	13.866	0.14486	13.8	13.716	13.861	-0.066068					7	4	2	0	0	0	0.344	1	535	535		2.5775	0	1	13576			7969	6104	4339	4339	10465	10465					-0.03758798236140137
EVPYEGLCL	9	Unmodified	_EVPYEGLCL_					0	0	0			REV__ENSG00000151692|ENST00000320892|RNF144A	REV__ENSG00000151692|ENST00000320892|RNF144A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.3183898925781	2	511.746793	1021.47903	0.26279	0.00013448	-2.4249	-0.0012409	-2.1621	-0.0011064	511.7454876461405	64.962	0.29263	64.962	64.755	65.047	0					13	10	2	0	0	0	0.24311	1	16177	16177		11.64	0	1	98443	+		7970	16551	4340	4340	10466	10466					-0.030847007939769355
EVQAFMGDFA	10	Unmodified	_EVQAFMGDFA_					0	0	0			REV__SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	REV__SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2824096679688	2	557.747324	1113.4801	0.060532	3.3762E-05	-3.5427	-0.0019759	-3.4821	-0.0019421	557.7459134293033	38.571	0.30353	38.571	38.32	38.623	0					14	10	2	0	0	0	0.30093	1	8037	8037		16.149	0.30192	1	120910	+		7971	16772	4341	4341	10467	10467					-0.0721048642506048
EVQAFMGDFA	10	Unmodified	_EVQAFMGDFA_					0	0	0			REV__SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	REV__SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2825317382812	2	557.747324	1113.4801	0.31793	0.00017733	-3.2433	-0.0018089	-2.9253	-0.0016316	557.7456879534194	38.549	0.35733	38.647	38.32	38.678	0.097527					15	12	2	0	0	0	0.30093	1	8037	8037		21.537	3.3906	1	175040	+		7972	16772	4341	4341	10468	10468					-0.0721048642506048
EVQAHNKR	8	Unmodified	_EVQAHNKR_					0	0	0		nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5;ENST00000475613.6_1_10:79580836-79628876:-|nuORF;nc|ENSG00000151208|Q8TDM6-3|DLG5	nc|ENSG00000151208|Q8TDM6-4|DLG5	nc|ENSG00000151208|Q8TDM6-4|DLG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.31927490234375	2	491.264865	980.515176	-0.073585	-3.615E-05	-1.072	-0.00052665	-1.1456	-0.0005628	491.26408766594915	13.116	0.33762	13.048	12.851	13.189	-0.067496					16	11	3	0	0	0	0.34408	1	311	311		2.3027	0.24298	1	18901			7973	4944	4342	4342	10469	10469					0.024139372177501173
EVQANNRH	8	Unmodified	_EVQANNRH_					0	0	0			REV__nc|ENSG00000104447|Q9UHF7|TRPS1	REV__nc|ENSG00000104447|Q9UHF7|TRPS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7855224609375	2	484.238847	966.463141	0.13882	6.722E-05	1.6388	0.00079356	1.7776	0.00086078	484.2415222072898	17.874	0.16752	17.814	17.704	17.872	-0.060431					6	5	2	0	0	0	0.34414	1	1762	1762		2.0598	0.40713	1	9585	+		7974	14410	4343	4343	10470	10470					-0.021432261960057986
EVQKLIQKF	9	Unmodified	_EVQKLIQKF_					0	0	0			REV__ENST00000551503.5_1_12:46849617-46849752:+|nuORF	REV__ENST00000551503.5_1_12:46849617-46849752:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2800903320312	2	566.839874	1131.66519	0.22598	0.00012809	0.74598	0.00042285	0.97195	0.00055094	566.8402854749634	67.861	0.37105	67.844	67.672	68.043	-0.016296					17	12	2	0	0	0	0.24289	1	17007	17007		13.042	0	1	143310	+		7975	22207	4344	4344	10471	10471					0.10462864436863129
EVQQTGFVK	9	Unmodified	_EVQQTGFVK_					0	0	0		ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3172607421875	2	518.277106	1034.53966	0.64497	0.00033427	3.6262	0.0018794	4.2712	0.0022137	518.2794947551187	78.931	0.78347	78.931	78.358	79.142	0					57	31	3	0	0	0	0.24429	1	20438	20438		18.373	4.467	1	151970			7976	3805	4345	4345	10472	10472					0.023771525806296268
EVRADTRPWS	10	Unmodified	_EVRADTRPWS_					0	0	0		ENST00000472871.1_1_13:95120883-95131509:-|nuORF;ENSG00000080166|ENST00000377028|DCT;nc|ENSG00000080166|P40126-2|DCT	ENST00000472871.1_1_13:95120883-95131509:-|nuORF	ENST00000472871.1_1_13:95120883-95131509:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.24346923828125	3	406.207155	1215.59963	-0.060843	-2.4715E-05	0.17414	7.0736E-05	0.11329	4.6021E-05	406.20688982669776	43.931	0.26485	44.015	43.866	44.131	0.083996					12	9	2	0	0	0	0.31515	1	9678	9678		4.7159	0	1	182220			7977	1149	4346	4346	10473	10473					0.0004584324383358762
EVRAEYIQNII	11	Unmodified	_EVRAEYIQNII_					0	0	0			REV__ENST00000570439.1_1_17:7251430-7251541:+|nuORF	REV__ENST00000570439.1_1_17:7251430-7251541:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.2737731933594	3	449.913748	1346.71942	0.21754	9.7875E-05	-0.8167	-0.00036744	-0.59915	-0.00026957	449.91323741054714	39.459	0.57659	39.559	39.292	39.868	0.099407					43	20	4	0	0	0	0.33094	1	8399	8399		7.4771	0	1	338990	+		7978	13765	4347	4347	10474	10474					0.05992411797774366
EVREIVAVFF	10	Unmodified	_EVREIVAVFF_					0	0	0			REV__ENST00000422386.5_1_7:75045260-75045695:+|nuORF	REV__ENST00000422386.5_1_7:75045260-75045695:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2696228027344	3	403.560646	1207.66011	-0.066866	-2.6984E-05	4.2948	0.0017332	4.2279	0.0017062	403.8954459165676	51.107	0.52436	51.153	50.929	51.454	0.046574					46	19	4	0	0	0	0.31847	1	11842	11842		1.7423	0.28716	1	276100	+		7979	15449	4348	4348	10475	10475					0.06458560574219518
EVRKLRENLAK	11	Unmodified	_EVRKLRENLAK_					0	0	0			REV__ENSG00000126062|ENST00000266025|TMEM115	REV__ENSG00000126062|ENST00000266025|TMEM115	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.93353271484375	3	452.60877	1354.80448	0.025968	1.1753E-05	-0.19878	-8.997E-05	-0.17281	-7.8216E-05	452.60873626046003	33.641	0.30069	33.707	33.607	33.907	0.066704					13	10	2	0	0	0	0.46704	1	6546	6546		2.4348	0.35082	1	110650	+		7980	15299	4349	4349	10476	10476					0.14127202054237387
EVRLNRALEEA	11	Unmodified	_EVRLNRALEEA_					0	0	0		nc|ENSG00000151575|Q8N6V9-2|TEX9;ENSG00000151575|ENST00000696102|TEX9	nc|ENSG00000151575|Q8N6V9-2|TEX9	nc|ENSG00000151575|Q8N6V9-2|TEX9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.5797424316406	3	433.905364	1298.69426	0.056431	2.4486E-05	1.721	0.00074677	1.7775	0.00077126	434.23986734038857	37.082	0.27238	37.169	37.032	37.305	0.08741					12	9	2	0	0	0	0.33169	1	7571	7571		3.8459	1.0026	1	64985			7981	4968	4350	4350	10477	10477					0.056863569951929094
EVRPMEHVT	9	Unmodified	_EVRPMEHVT_					0	0	0			REV__nc|ENSG00000160345|Q5BN46-2|PIERCE1	REV__nc|ENSG00000160345|Q5BN46-2|PIERCE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7991943359375	2	549.274041	1096.53353	0.24246	0.00013318	2.973	0.001633	3.2154	0.0017662	549.7757977251094	14.942	0.24869	14.832	14.706	14.955	-0.10981					11	8	2	0	0	0	0.25066	1	884	884		11.64	2.8949	1	25373	+		7982	23052	4351	4351	10478	10478					-0.01087688922552843
EVRRPRCLYKN	11	Unmodified	_EVRRPRCLYKN_					0	0	0			REV__ENSG00000173917|ENST00000330070|HOXB2	REV__ENSG00000173917|ENST00000330070|HOXB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.9563293457031	3	478.597988	1432.77214	0.32463	0.00015537	-1.0224	-0.0004893	-0.69773	-0.00033393	478.59744354382707	40.642	0.43433	40.642	40.388	40.822	0					23	15	2	0	0	0	0.33056	1	8616	8616		8.7518	0.90574	1	172380	+		7983	14500	4352	4352	10479	10479					0.07306091379587087
EVRRPRCLYKN	11	Unmodified	_EVRRPRCLYKN_					0	0	0			REV__ENSG00000173917|ENST00000330070|HOXB2	REV__ENSG00000173917|ENST00000330070|HOXB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.9563903808594	3	478.597988	1432.77214	0.44289	0.00021197	-1.1308	-0.00054121	-0.68792	-0.00032924	478.59747867239406	40.426	0.43383	40.518	40.284	40.718	0.09267					25	15	2	0	0	0	0.3287	1	8557	8557		12.228	2.2113	1	230530	+		7984	14500	4352	4352	10480	10480					0.07306091379587087
EVRTIYLLTL	10	Unmodified	_EVRTIYLLTL_					0	0	0			REV__ENSG00000099282|ENST00000373290|TSPAN15	REV__ENSG00000099282|ENST00000373290|TSPAN15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2108154296875	3	407.579818	1219.71762	-0.28141	-0.0001147	-2.9564	-0.001205	-3.2378	-0.0013197	407.57901157863574	30.358	0.22127	30.385	30.309	30.53	0.027159					10	7	2	0	0	0	0.32033	1	5552	5552		2.086	0	1	39623	+		7985	14127	4353	4353	10481	10481					0.11655402779797441
EVRWLWNEPFF	11	Unmodified	_EVRWLWNEPFF_					0	0	0			REV__ENSG00000244731|ENST00000428956|C4A	REV__ENSG00000244731|ENST00000428956|C4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8108825683594	3	508.254105	1521.74048	0.34342	0.00017454	-2.9185	-0.0014834	-2.5751	-0.0013088	508.5867592994153	58.908	0.42496	58.908	58.682	59.107	0					22	14	2	0	0	0	0.33263	1	14336	14336		3.8459	1.2147	1	104240	+		7986	19110	4354	4354	10482	10482					0.0004842189725877688
EVRWLWNEPFF	11	Unmodified	_EVRWLWNEPFF_					0	0	0			REV__ENSG00000244731|ENST00000428956|C4A	REV__ENSG00000244731|ENST00000428956|C4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	508.254105	1521.74048	0.38555	0.00019596	-3.5664	-0.0018127	-3.1809	-0.0016167	508.2525508481691	59.145	0.11319	59.13	59.031	59.144	-0.014267	0.11116	-0.00084444	NaN	6.2344	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137110	+		7987	19110	4354	4354							0.0004842189725877688
EVSAFMGDPGK	11	Unmodified	_EVSAFMGDPGK_					0	0	0		ENSG00000143473|ENST00000271751|KCNH1	ENSG00000143473|ENST00000271751|KCNH1	ENSG00000143473|ENST00000271751|KCNH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.7881469726562	2	569.265881	1136.51721	-0.041968	-2.3891E-05	-2.2495	-0.0012806	-2.2915	-0.0013045	569.264729828399	15.099	0.19549	15.099	15.012	15.207	0					9	6	2	0	0	0	0.33218	1	941	941		4.1895	1.4543	1	24926			7988	4518	4355	4355	10483	10483					-0.04558814879305828
EVSDAKNKAF	10	Unmodified	_EVSDAKNKAF_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3555908203125	2	554.785296	1107.55604	0.58547	0.00032481	0.32877	0.0001824	0.91424	0.00050721	554.7851873409027	36.217	0.59186	36.304	36.034	36.626	0.08625					35	19	2	0	0	0	0.31745	1	7401	7401		8.7454	2.0222	1	740570			7989	5195	4356	4356	10484	10484					0.006562337466903045
EVSDLKYK	8	Unmodified	_EVSDLKYK_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.E6206Gfs*23|1|0.69|ENSG00000183091|chr2:151505500-151505500|T/-|frameshift_variant;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.79779052734375	2	491.266207	980.517862	0.0098498	4.8389E-06	-1.8898	-0.00092842	-1.88	-0.00092358	491.2652540545939	13.169	0.46827	13.07	12.869	13.337	-0.099291					19	15	2	0	0	0	0.34198	1	288	288		10.824	1.4765	1	21382			7990	7345	4357	4357	10485	10485					0.02682347832035248
EVSFAEGGYYL	11	Unmodified	_EVSFAEGGYYL_					0	0	0			REV__ENSG00000176407|ENST00000409785|KCMF1	REV__ENSG00000176407|ENST00000409785|KCMF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	617.2987060546875	2	617.784961	1233.55537	0.24097	0.00014887	-0.038733	-2.3929E-05	0.20224	0.00012494	617.7847965531637	52.366	0.58057	52.366	52.049	52.63	0					33	20	2	0	0	0	0.31312	1	12296	12296		21.537	6.6987	1	591880	+		7991	17937	4358	4358	10486	10486					-0.05206605692978883
EVSFAEGGYYL	11	Unmodified	_EVSFAEGGYYL_					0	0	0			REV__ENSG00000176407|ENST00000409785|KCMF1	REV__ENSG00000176407|ENST00000409785|KCMF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	617.2989501953125	2	617.784961	1233.55537	0.16565	0.00010234	0.2763	0.00017069	0.44195	0.00027303	617.7850595680545	52.245	0.46314	52.295	52.06	52.523	0.050571					34	16	3	0	0	0	0.32798	1	12264	12264		11.495	2.1116	1	492950	+		7992	17937	4358	4358	10487	10487					-0.05206605692978883
EVSFAEGGYYL	11	Unmodified	_EVSFAEGGYYL_					0	0	0			REV__ENSG00000176407|ENST00000409785|KCMF1	REV__ENSG00000176407|ENST00000409785|KCMF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	617.2997436523438	2	617.784961	1233.55537	0.10116	6.2495E-05	0.29733	0.00018368	0.39849	0.00024618	618.2867043465582	52.55	0.567	52.549	52.305	52.872	-0.00080872					34	20	2	0	0	0	0.31312	1	12329	12329		21.537	9.2963	1	556040	+		7993	17937	4358	4358	10488	10488					-0.05206605692978883
EVSFVFILQ	9	Unmodified	_EVSFVFILQ_					0	0	0			REV__ENST00000564869.1_1_16:8874302-8875226:-|nuORF	REV__ENST00000564869.1_1_16:8874302-8875226:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7716674804688	2	541.30005	1080.58555	0.49315	0.00026694	2.3013	0.0012457	2.7945	0.0015126	541.3011404353068	72.857	0.30388	72.911	72.814	73.118	0.053841					14	10	2	0	0	0	0.2451	1	18605	18605		10.824	4.1008	1	87109	+		7994	22349	4359	4359	10489	10489					0.048477977628635927
EVSFVFILQ	9	Unmodified	_EVSFVFILQ_					0	0	0			REV__ENST00000564869.1_1_16:8874302-8875226:-|nuORF	REV__ENST00000564869.1_1_16:8874302-8875226:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.30005	1080.58555	0.44524	0.00024101	1.9589	0.0010604	2.4042	0.0013014	541.3009171681089	73.292	0.40155	73.292	72.961	73.363	0	0.19051	-0.00025405	NaN	10.824	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125550	+		7995	22349	4359	4359							0.048477977628635927
EVSHENIN	8	Unmodified	_EVSHENIN_					0	0	0		nc|ENSG00000257743|Q2M2H8-3|MGAM2;ENSG00000257743|ENST00000477922|MGAM2	nc|ENSG00000257743|Q2M2H8-3|MGAM2	nc|ENSG00000257743|Q2M2H8-3|MGAM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2222595214844	2	471.219788	940.425024	0.68366	0.00032215	-1.6267	-0.00076651	-0.94299	-0.00044436	471.22087842734163	78.032	2.3113	78.002	76.347	78.658	-0.030434					130	85	3	0	0	0	0.45169	1	20278	20278		5.2307	0.90143	1	260710			7996	8637	4360	4360	10490	10490					-0.04757156901337112
EVSIYLPVS	9	Unmodified	_EVSIYLPVS_					0	0	0		ENST00000481082.1_1_1:157512505-157514867:-|nuORF	ENST00000481082.1_1_1:157512505-157514867:-|nuORF	ENST00000481082.1_1_1:157512505-157514867:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.7945556640625	2	503.776408	1005.53826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.591	1	85.591	85.091	86.091	0								0	0	0	0.20238	1	22488	22488		21.747	0	1				7997	11019	4361	4361	10491	10491					0.035715184918672094
EVSTQLPRVWS	11	Unmodified	_EVSTQLPRVWS_					0	0	0		ENST00000480380.1_1_1:19545909-19546163:-|nuORF	ENST00000480380.1_1_1:19545909-19546163:-|nuORF	ENST00000480380.1_1_1:19545909-19546163:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.9380187988281	3	434.56646	1300.67755	-0.38171	-0.00016588	-0.3428	-0.00014897	-0.72451	-0.00031485	434.56628937349564	30.189	0.54248	30.216	29.987	30.53	0.027157					30	18	2	0	0	0	0.33207	1	5561	5561		5.5233	1.1171	1	99840			7998	11007	4362	4362	10492	10492					0.039238561092361124
EVSYAPVPF	9	Unmodified	_EVSYAPVPF_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.79754638671875	2	504.755475	1007.4964	0.3237	0.00016339	-0.62223	-0.00031408	-0.29854	-0.00015069	504.75524935370163	67.938	0.47157	67.938	67.706	68.178	0					26	16	2	0	0	0	0.15464	1	17083	17083		38.151	20.005	1	302620	+		7999	17310	4363	4363	10493	10493					-0.007050371966670355
EVSYAPVPF	9	Unmodified	_EVSYAPVPF_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.79779052734375	2	504.755475	1007.4964	0.45683	0.00023059	-0.28615	-0.00014443	0.17069	8.6156E-05	504.7552801708614	67.809	0.58975	67.887	67.603	68.193	0.078041					31	20	3	0	0	0	0.18943	1	17022	17022		30.225	10.786	1	232220	+		8000	17310	4363	4363	10494	10494					-0.007050371966670355
EVSYAPVPF	9	Unmodified	_EVSYAPVPF_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.79766845703125	2	504.755475	1007.4964	0.30796	0.00015545	-0.72725	-0.00036708	-0.41929	-0.00021164	504.75526574894565	67.948	0.52791	67.932	67.672	68.2	-0.016296					27	18	2	0	0	0	0.21137	1	17058	17058		24.674	24.674	1	257790	+		8001	17310	4363	4363	10495	10495					-0.007050371966670355
EVTLLHVDW	9	Unmodified	_EVTLLHVDW_					0	0	0		ENSG00000173714|ENST00000311378|WFIKKN2	ENSG00000173714|ENST00000311378|WFIKKN2	ENSG00000173714|ENST00000311378|WFIKKN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3131103515625	2	556.292756	1110.57096	0.54979	0.00030585	-0.37283	-0.0002074	0.17696	9.8442E-05	556.2924827082538	55.486	0.66109	55.557	55.297	55.958	0.070885					63	24	3	0	0	0	0.21303	1	13302	13302		21.747	0.20967	1	1240200			8002	6745	4364	4364	10496	10496					0.02009725614720992
EVVAHLKEV	9	Unmodified	_EVVAHLKEV_					0	0	0		ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2717895507812	2	512.295299	1022.57605	0.35566	0.0001822	-1.8414	-0.00094335	-1.4858	-0.00076115	512.2946243294463	71.202	0.59303	71.202	70.989	71.582	0					41	20	3	0	0	0	0.25323	1	18188	18188		10.074	0.6908	1	701000			8003	499	4365	4365	10497	10497					0.06566029477323809
EVVDKSQVS	9	Unmodified	_EVVDKSQVS_					0	0	0		ENST00000479978.5_1_22:41615341-41623356:+|nuORF;nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2	ENST00000479978.5_1_22:41615341-41623356:+|nuORF	ENST00000479978.5_1_22:41615341-41623356:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7488098144531	2	495.758746	989.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.036	1	68.114	67.614	68.614	0.078041								0	0	0	0.20639	1	17110	17110		20.454	0	1				8004	1587	4366	4366	10498	10498					0.007768559640567219
EVVKIKEES	9	Unmodified	_EVVKIKEES_					0	0	0			REV__nc|ENSG00000100285|P12036-2|NEFH	REV__nc|ENSG00000100285|P12036-2|NEFH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.323974609375	2	530.797872	1059.58119	0.15549	8.2532E-05	-3.3695	-0.0017885	-3.214	-0.001706	530.7955572968116	14.506	0.18937	14.44	14.373	14.563	-0.066068					10	6	2	0	0	0	0.25706	1	727	727		6.7232	0	1	23628	+		8005	14177	4367	4367	10499	10499					0.05378288549286481
EVVSYSKLV	9	Unmodified	_EVVSYSKLV_					0	0	0			REV__ENSG00000100427|ENST00000311597|MLC1	REV__ENSG00000100427|ENST00000311597|MLC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2789306640625	2	512.289682	1022.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.993	1	74.961	74.461	75.461	-0.031487								0	0	0	0.20639	1	19231	19231		20.454	3.3407	1		+		8006	14197	4368	4368	10500	10500					0.05443207383200388
EVVVLIVV	8	Unmodified	_EVVVLIVV_					0	0	0		nc|ENSG00000284680|Q96RD0|OR8B2;nc|ENSG00000284609|Q8NGG8|OR8B3	nc|ENSG00000284680|Q96RD0|OR8B2	nc|ENSG00000284680|Q96RD0|OR8B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.2887268066406	2	435.288954	868.563355	-0.12607	-5.4875E-05	-0.58125	-0.00025301	-0.70732	-0.00030789	435.2887472730632	92.306	1.2366	92.306	91.94	93.177	0					193	94	3	0	0	0	0.33916	1	24577	24577		26.341	0	1	358080			8007	13001	4369	4369	10501	10501					0.12381618085100854
EVVVLIVV	8	Unmodified	_EVVVLIVV_					0	0	0		nc|ENSG00000284680|Q96RD0|OR8B2;nc|ENSG00000284609|Q8NGG8|OR8B3	nc|ENSG00000284680|Q96RD0|OR8B2	nc|ENSG00000284680|Q96RD0|OR8B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2887878417969	2	435.288954	868.563355	-0.011001	-4.7888E-06	-0.62336	-0.00027134	-0.63436	-0.00027613	435.2886825001973	92.203	1.0991	92.292	91.824	92.923	0.089203					172	75	3	0	0	0	0.2285	1	24488	24488		52.693	9.7251	1	633400			8008	13001	4369	4369	10502	10502					0.12381618085100854
EVWAHRWMD	9	Unmodified	_EVWAHRWMD_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000566099.5_1_15:75649132-75651406:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2202453613281	3	410.522197	1228.54476	0.10828	4.4452E-05	3.1298	0.0012849	3.2381	0.0013293	410.5233185026594	19.688	0.63546	19.572	19.177	19.812	-0.11592					28	21	2	0	0	0	0.26145	1	2293	2293		1.0715	0.22652	1	29460			8009	4301	4370	4370	10503	10503					-0.060368668284127125
EVWIVVIYI	9	Unmodified	_EVWIVVIYI_					0	0	0		ENST00000487558.1_1_2:225360464-225362517:-|nuORF	ENST00000487558.1_1_2:225360464-225362517:-|nuORF	ENST00000487558.1_1_2:225360464-225362517:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2615966796875	2	567.333893	1132.65323	-0.13198	-7.4877E-05	-0.83087	-0.00047138	-0.96285	-0.00054626	567.3332685155153	98.738	1.3881	98.738	98.426	99.814	0					394	170	3	0	0	0	0.25879	1	26348	26348		4.756	0.81161	1	622820			8010	11121	4371	4371	10504	10504					0.09221247693653822
EVYESLPEEL	10	Unmodified	_EVYESLPEEL_					0	0	0		ENST00000519230.1_1_5:157413535-157414072:-|nuORF;ENSG00000105401|ENST00000222005|CDC37	ENST00000519230.1_1_5:157413535-157414072:-|nuORF	ENST00000519230.1_1_5:157413535-157414072:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.19647216796875	3	403.19581	1206.5656	-0.14479	-5.8377E-05	-0.20521	-8.2742E-05	-0.35	-0.00014112	403.1965314266502	24.506	0.56847	24.506	24.248	24.817	0					46	18	4	0	0	0	0.32009	1	3811	3811		3.8763	1.97	1	127520			8011	1976	4372	4372	10505	10505					-0.029420427584227582
EWEERRRQN	9	Unmodified	_EWEERRRQN_					0	0	0		ENSG00000105321|ENST00000221922|CCDC9;chr19:47272161-47273357|540|49.28|0.0|22.23|+|ENST00000643617|CCDC9,CCDC9	ENSG00000105321|ENST00000221922|CCDC9	ENSG00000105321|ENST00000221922|CCDC9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.88238525390625	3	434.881441	1301.62249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.01	1	111.99	111.49	112.49	-0.015625								0	0	0	0.26629	1	29138	29138		0.96228	0.18574	1				8012	143	4373	4373	10506	10506					-0.01625137638666274
EWEERRRQN	9	Unmodified	_EWEERRRQN_					0	0	0		ENSG00000105321|ENST00000221922|CCDC9;chr19:47272161-47273357|540|49.28|0.0|22.23|+|ENST00000643617|CCDC9,CCDC9	ENSG00000105321|ENST00000221922|CCDC9	ENSG00000105321|ENST00000221922|CCDC9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.882080078125	3	434.881441	1301.62249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.35	1	25.319	24.819	25.819	-0.031408								0	0	0	0.26265	1	4024	4024		2.2828	0.5405	1				8013	143	4373	4373	10507	10507					-0.01625137638666274
EWHLFCVL	8	Unmodified	_EWHLFCVL_					0	0	0			REV__ENSG00000125818|ENST00000335877|PSMF1	REV__ENSG00000125818|ENST00000335877|PSMF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.247314453125	2	523.760038	1045.50552	0.38966	0.00020409	-1.0198	-0.00053412	-0.63011	-0.00033003	523.7596095871385	24.138	0.36919	24.138	23.943	24.312	0					18	12	2	0	0	0	0.3439	1	3615	3615		2.8892	0.31174	1	41560	+		8014	15284	4374	4374	10508	10508					-0.015409671119869017
EWIERLHN	8	Unmodified	_EWIERLHN_					0	0	0			REV__ENST00000555791.5_1_15:91527220-91537794:-|nuORF	REV__ENST00000555791.5_1_15:91527220-91537794:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7820434570312	2	548.780348	1095.54614	0.031125	1.7081E-05	3.414	0.0018735	3.4451	0.0018906	548.7824051424773	12.545	0.20277	12.477	12.377	12.579	-0.06806					13	6	3	0	0	0	0.46491	1	165	165		0.69038	0	1	43500	+		8015	18886	4375	4375	10509	10509					0.002190905319821468
EWIISTYWI	9	Unmodified	_EWIISTYWI_					0	0	0			REV__ENST00000230538.11_1_6:112462098-112462671:-|nuORF	REV__ENST00000230538.11_1_6:112462098-112462671:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.8918762207031	3	404.209613	1209.60701	-0.3015	-0.00012187	3.0318	0.0012255	2.7303	0.0011036	404.2109058590104	23.448	0.46612	23.361	23.165	23.631	-0.087608					31	16	3	0	0	0	0.25417	1	3421	3421		5.2969	0.39987	1	43960	+		8016	19461	4376	4376	10510	10510					0.010591827915504837
EWIYSLEPI	9	Unmodified	_EWIYSLEPI_					0	0	0			REV__nc|ENSG00000169891|Q8NFH8-4|REPS2	REV__nc|ENSG00000169891|Q8NFH8-4|REPS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.8302612304688	2	575.294965	1148.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.038	1	12.038	11.538	12.538	0								0	0	0	0.264	1	7	7		1.8442	0	1		+		8017	17548	4377	4377	10511	10511					0.007031900375977784
EWKFADIL	8	Unmodified	_EWKFADIL_					0	0	0		ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2806091308594	2	511.271293	1020.52803	0.66319	0.00033907	-1.3188	-0.00067427	-0.65563	-0.00033521	511.2705212039902	50.441	2.1796	50.462	49.284	51.464	0.020691					129	81	2	0	0	0	0.3671	1	11889	11889		23.148	0	1	385240			8018	2828	4378	4378	10512	10512					0.01858955557270292
EWKLAEVGA	9	Unmodified	_EWKLAEVGA_					0	0	0		ENSG00000163440|ENST00000295645|PDCL2	ENSG00000163440|ENST00000295645|PDCL2	ENSG00000163440|ENST00000295645|PDCL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7773742675781	2	501.766374	1001.5182	0.10812	5.4252E-05	0.25872	0.00012982	0.36684	0.00018407	502.26807871733064	27.561	0.87994	27.54	26.985	27.865	-0.021412					48	30	2	0	0	0	0.22674	1	4535	4535		22.736	2.2827	1	107780			8019	5678	4379	4379	10513	10513					0.017497675518939104
EWKLAEVGA	9	Unmodified	_EWKLAEVGA_					0	0	0		ENSG00000163440|ENST00000295645|PDCL2	ENSG00000163440|ENST00000295645|PDCL2	ENSG00000163440|ENST00000295645|PDCL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	501.766374	1001.5182	0.16501	8.2799E-05	0.070787	3.5518E-05	0.2358	0.00011832	501.7663315917804	27.542	0.91649	27.542	27.007	27.924	0	0.067287	-8.969E-05	NaN	22.736	48	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89012			8020	5678	4379	4379							0.017497675518939104
EWLSHTER	8	Unmodified	_EWLSHTER_					0	0	0			REV__ENSG00000205078|ENST00000378644|SYCE1L	REV__ENSG00000205078|ENST00000378644|SYCE1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.25634765625	2	529.256705	1056.49886	0.18057	9.557E-05	-0.14494	-7.6713E-05	0.035629	1.8857E-05	529.2565220057785	14.983	0.64646	14.919	14.511	15.158	-0.064413					46	22	3	0	0	0	0.46092	1	849	849		2.0598	0.57785	1	132230	+		8021	18979	4380	4380	10514	10514					-0.027131887389941767
EWMGWITPF	9	Unmodified	_EWMGWITPF_					0	0	0		nc|ENSG00000211961|A0A0A0MS14|IGHV1-45	nc|ENSG00000211961|A0A0A0MS14|IGHV1-45	nc|ENSG00000211961|A0A0A0MS14|IGHV1-45	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3299560546875	2	583.770603	1165.52665	0.52279	0.00030519	-2.3663	-0.0013814	-1.8436	-0.0010762	584.270981150775	55.584	0.29314	55.655	55.535	55.828	0.070885					19	10	2	0	0	0	0.24913	1	13248	13248		12.532	1.4171	1	208750			8022	12939	4381	4381	10515	10515					-0.04949001803129249
EWNCFFGYK	9	Unmodified	_EWNCFFGYK_					0	0	0		ENSG00000185269|ENST00000409678|NOTUM	ENSG00000185269|ENST00000409678|NOTUM	ENSG00000185269|ENST00000409678|NOTUM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.25830078125	2	597.257859	1192.50117	-1.0827	-0.00064667	1.6985	0.0010144	0.61576	0.00036777	597.2589463925597	34.683	0.65319	34.759	34.47	35.123	0.075306					58	23	3	0	0	0	0.33018	1	6903	6903		4.3292	0.73274	1	648390			8023	7520	4382	4382	10516	10516					-0.0873847632556135
EWRNRRKKRR	10	Unmodified	_EWRNRRKKRR_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2662658691406	3	495.630903	1483.87088	0.57651	0.00028574	-0.63209	-0.00031328	-0.055578	-2.7546E-05	495.6304690228792	44.958	0.16026	44.958	44.909	45.069	0					6	5	2	0	0	0	0.32165	1	10021	10021		0.69767	0.61432	1	131380			8024	5071	4383	4383	10517	10517					0.14829875459463437
EWRPEQYR	8	Unmodified	_EWRPEQYR_					0	0	0			REV__nc|ENSG00000154429|Q6IQ19-3|CCSAP	REV__nc|ENSG00000154429|Q6IQ19-3|CCSAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3081665039062	2	582.283254	1162.55196	0.57859	0.00033691	0.38811	0.00022599	0.96671	0.0005629	582.2836170157025	32.13	0.1093	32.172	32.084	32.193	0.042366					5	3	2	0	0	0	0.34247	1	6071	6071		8.5933	1.8701	1	80904	+		8025	16667	4384	4384	10518	10518					-0.022818109563331745
EWRRRPRR	8	Unmodified	_EWRRRPRR_					0	0	0		ENST00000291572.12_1_21:45404383-45404527:+|nuORF	ENST00000291572.12_1_21:45404383-45404527:+|nuORF	ENST00000291572.12_1_21:45404383-45404527:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5267639160156	3	404.570873	1210.69079	-0.35544	-0.0001438	-0.93504	-0.00037829	-1.2905	-0.00052209	404.57053160925983	15.35	0.56626	15.24	14.982	15.549	-0.10981					37	19	3	0	0	0	0.34313	1	994	994		6.7232	3.1267	1	58002			8026	9159	4385	4385	10519	10519					0.09387196522493468
EWSPTPAL	8	Unmodified	_EWSPTPAL_					0	0	0		nc|ENSG00000106003|Q8NES3-4|LFNG	nc|ENSG00000106003|Q8NES3-4|LFNG	nc|ENSG00000106003|Q8NES3-4|LFNG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7791748046875	2	450.726718	899.438883	0.438	0.00019742	-0.14143	-6.3748E-05	0.29656	0.00013367	450.72654470751604	64.141	0.68599	64.141	63.797	64.483	0					40	24	2	0	0	0	0.34092	1	15983	15983		13.508	1.8676	1	288550			8027	12638	4386	4386	10520	10520					-0.014858794022529764
EWTFMDMNLT	10	Unmodified	_EWTFMDMNLT_					0	0	0			REV__ENSG00000164176|ENST00000296591|EDIL3	REV__ENSG00000164176|ENST00000296591|EDIL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.2735595703125	2	644.272849	1286.53115	0.27772	0.00017893	0.00076601	4.9352E-07	0.27849	0.00017942	644.2726740208487	69.679	0.45064	69.745	69.459	69.91	0.066048					35	15	3	0	0	0	0.37454	1	17635	17635		8.1555	2.8586	1	218100	+		8028	17133	4387	4387	10521	10521					-0.10065905442525036
EWVAWQWL	8	Unmodified	_EWVAWQWL_					0	0	0			REV__ENST00000529428.5_1_16:30280378-30291878:-|nuORF	REV__ENST00000529428.5_1_16:30280378-30291878:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.8048706054688	2	559.276909	1116.53927	0.13135	7.3462E-05	-3.0535	-0.0017078	-2.9222	-0.0016343	559.274981345043	39.259	0.16526	39.352	39.251	39.416	0.09267					8	5	2	0	0	0	0.34337	1	8258	8258		5.2307	0.90143	1	74551	+		8029	21996	4388	4388	10522	10522					-0.014342223485755312
EYAAGPFALF	10	Unmodified	_EYAAGPFALF_					0	0	0		ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2691650390625	2	543.26875	1084.52295	0.57616	0.00031301	0.56322	0.00030598	1.1394	0.00061899	543.2687225612796	89.225	1.625	89.225	88.584	90.209	0					228	100	3	0	0	0	5.3752E-14	4	23624	23624;23663;23703;23744		196.94	158.79	1	1665000			8030	8152	4389	4389	10523;10524;10525;10526	10523					-0.015933483053458986
EYAAGPFALF	10	Unmodified	_EYAAGPFALF_					0	0	0		ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2691650390625	2	543.26875	1084.52295	0.62952	0.000342	0.65226	0.00035435	1.2818	0.00069635	543.2687474876618	89.161	2.2768	89.251	87.747	90.024	0.090569					264	126	3	0	0	0	7.4E-10	6	23573	23483;23528;23573;23615;23659;23697		179.23	141.08	1	1525900			8031	8152	4389	4389	10527;10528;10529;10530;10531;10532	10529					-0.015933483053458986
EYAAGPFALF	10	Unmodified	_EYAAGPFALF_					0	0	0		ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2691650390625	2	543.26875	1084.52295	0.68067	0.00036979	0.52435	0.00028486	1.205	0.00065465	543.2686818005564	89.189	1.8825	89.188	88.312	90.195	-0.00080872					257	115	3	0	0	0	5.3752E-14	3	23600	23600;23643;23689		196.94	158.79	1	1675400			8032	8152	4389	4389	10533;10534;10535	10533					-0.015933483053458986
EYAAQLQNF	9	Unmodified	_EYAAQLQNF_					0	0	0		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2591552734375	2	542.258914	1082.50327	0.59287	0.00032149	0.21516	0.00011667	0.80803	0.00043816	542.2590459379352	56.653	0.51377	56.653	56.423	56.937	0					41	18	3	0	0	0	1.8227E-16	1	13620	13620		205.78	102.03	1	884840			8033	4096	4390	4390	10536	10536					-0.03467724316078602
EYAAQLQNF	9	Unmodified	_EYAAQLQNF_					0	0	0		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2594604492188	2	542.258914	1082.50327	0.83175	0.00045102	-0.25139	-0.00013632	0.58036	0.0003147	542.2589876737349	56.554	0.52515	56.632	56.358	56.883	0.078671					36	19	2	0	0	0	3.2673E-06	1	13601	13601		160.52	68.025	1	709480			8034	4096	4390	4390	10537	10537					-0.03467724316078602
EYAAQLQNF	9	Unmodified	_EYAAQLQNF_					0	0	0		nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L;nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	nc|ENSG00000137942|Q5T0N5-3|FNBP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.25927734375	2	542.258914	1082.50327	1.0884	0.00059021	-0.17777	-9.6396E-05	0.91066	0.00049382	542.2589028622574	56.768	0.55197	56.749	56.511	57.063	-0.019077					33	19	2	0	0	0	2.4546E-10	1	13658	13658		198.25	94.502	1	869100			8035	4096	4390	4390	10538	10538					-0.03467724316078602
EYAAQLQRF	9	Unmodified	_EYAAQLQRF_					0	0	0		ENSG00000125733|ENST00000313244|TRIP10;nc|ENSG00000125733|Q15642-5|TRIP10;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.2884521484375	2	563.288005	1124.56146	0.60097	0.00033852	-0.20332	-0.00011453	0.39765	0.00022399	563.2878906546925	45.655	0.73719	45.655	45.266	46.003	0					69	26	3	0	0	0	0.0033114	1	10168	10168		99.799	67.013	1	1582900			8036	3227	4391	4391	10539	10539					0.004159573291872221
EYAAQLQRF	9	Unmodified	_EYAAQLQRF_					0	0	0		ENSG00000125733|ENST00000313244|TRIP10;nc|ENSG00000125733|Q15642-5|TRIP10;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.28857421875	2	563.288005	1124.56146	0.60713	0.00034199	-0.20281	-0.00011424	0.40432	0.00022775	563.2878525170385	45.397	0.98059	45.457	44.97	45.951	0.059834					90	34	5	0	0	0	0.0023784	1	10080	10080		107.19	59.593	1	1555200			8037	3227	4391	4391	10540	10540					0.004159573291872221
EYAAQLQRF	9	Unmodified	_EYAAQLQRF_					0	0	0		ENSG00000125733|ENST00000313244|TRIP10;nc|ENSG00000125733|Q15642-5|TRIP10;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.2877197265625	2	563.288005	1124.56146	0.37764	0.00021272	-0.058408	-3.29E-05	0.31923	0.00017982	563.2878999028683	45.363	0.92178	45.428	44.978	45.9	0.065048					75	33	3	0	0	0	0.0023784	1	10063	10063		107.19	81.788	1	1610800			8038	3227	4391	4391	10541	10541					0.004159573291872221
EYAESVLKF	9	Unmodified	_EYAESVLKF_					0	0	0			REV__ENSG00000179407|ENST00000319153|DNAJB8	REV__ENSG00000179407|ENST00000319153|DNAJB8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2689819335938	2	543.279315	1084.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.153	1	89.153	88.653	89.653	0								0	0	0	0.21357	1	23580	23580		18.135	2.2878	1		+		8039	18075	4392	4392	10542	10542					0.005186170035358373
EYAHLFEVF	9	Unmodified	_EYAHLFEVF_					0	0	0		nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.77978515625	2	577.779482	1153.54441	0.33842	0.00019553	-0.059749	-3.4522E-05	0.27867	0.00016101	577.7795326842461	72.796	1.6649	72.796	72.048	73.713	0					136	60	4	0	0	0	0.00056175	2	18552	18552;18598		128.37	46.752	1	2915800			8040	3516	4393	4393	10543;10544	10543					-0.026219632766242285
EYAHLFEVF	9	Unmodified	_EYAHLFEVF_					0	0	0		nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.7798461914062	2	577.779482	1153.54441	0.35914	0.0002075	0.085939	4.9654E-05	0.44507	0.00025715	577.779539614271	72.751	1.2652	72.805	72.484	73.749	0.053833					109	45	3	0	0	0	0.00014409	3	18579	18529;18579;18622		133.7	35.543	1	3021400			8041	3516	4393	4393	10545;10546;10547	10546					-0.026219632766242285
EYAHLFEVF	9	Unmodified	_EYAHLFEVF_					0	0	0		nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.7799682617188	2	577.779482	1153.54441	0.40396	0.0002334	0.10029	5.7944E-05	0.50425	0.00029135	577.7795390493202	72.826	1.2542	72.797	72.516	73.77	-0.029305					112	45	4	0	0	0	0.00056175	3	18558	18558;18607;18655		128.37	46.752	1	3734700			8042	3516	4393	4393	10548;10549;10550	10548					-0.026219632766242285
EYAKIEETM	9	Oxidation (M)	_EYAKIEETM(Oxidation (M))_		EYAKIEETM(1)		EYAKIEETM(140)	0	0	1		nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;ENSG00000081803|ENST00000449022|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.2575073242188	2	565.257722	1128.50089	-0.081043	-4.581E-05	0.22433	0.0001268	0.14329	8.0993E-05	565.257784248189	27.924	0.50805	27.924	27.673	28.181	0					50	17	4	0	0	0	0.00010125	2	4797	4797;4850		140.63	79.276	1	506720			8043	1189	4394	4394	10551;10552	10551		141			-0.058219408360855596
EYAKIEETM	9	Oxidation (M)	_EYAKIEETM(Oxidation (M))_		EYAKIEETM(1)		EYAKIEETM(120)	0	0	1		nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;ENSG00000081803|ENST00000449022|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.2577514648438	2	565.257722	1128.50089	0.0354	2.001E-05	0.097308	5.5004E-05	0.13271	7.5014E-05	565.2577111613697	27.888	0.64879	27.884	27.684	28.333	-0.0042572					48	22	3	0	0	0	0.0010968	1	4835	4835		121.53	60.177	1	494110			8044	1189	4394	4394	10553	10553		141			-0.058219408360855596
EYAKIEETM	9	Oxidation (M)	_EYAKIEETM(Oxidation (M))_		EYAKIEETM(1)		EYAKIEETM(96)	0	0	1		nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;ENSG00000081803|ENST00000449022|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.2577514648438	2	565.257722	1128.50089	-0.16324	-9.2274E-05	0.19848	0.00011219	0.035237	1.9918E-05	565.2577943877855	27.867	0.55803	27.868	27.657	28.215	0.0004673					48	19	4	0	0	0	0.0037449	1	4832	4832		96.367	52.508	1	537400			8045	1189	4394	4394	10554	10554		141			-0.058219408360855596
EYAKTFGYTF	10	Unmodified	_EYAKTFGYTF_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	613.7896728515625	2	613.790047	1225.56554	0.52623	0.00032299	-0.92408	-0.00056719	-0.39785	-0.0002442	613.7893127372412	56.478	0.79455	56.557	56.331	57.125	0.078674					78	29	4	0	0	0	4.613E-09	2	13562	13562;13613		174.48	134.24	1	2492400			8046	6111	4395	4395	10555;10556	10555					-0.03821997967770585
EYALLYHTL	9	Unmodified	_EYALLYHTL_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7853393554688	2	561.795132	1121.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.809	1	67.809	67.309	68.309	0								0	0	0	0.11932	1	17048	17048		41.84	20.093	1				8047	295	4396	4396	10557	10557					0.019786097574751693
EYALLYHTL	9	Unmodified	_EYALLYHTL_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7852172851562	2	561.795132	1121.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.832	1	67.832	67.332	68.332	0								0	0	0	0.14393	1	17055	17055		36.127	7.6402	1				8048	295	4396	4396	10558	10558					0.019786097574751693
EYALLYHTL	9	Unmodified	_EYALLYHTL_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7949829101562	2	561.795132	1121.57571	0.22111	0.00012422	0.016211	9.1072E-06	0.23732	0.00013333	561.7950298414503	69.605	1.1526	69.671	69.232	70.384	0.066048					98	40	4	0	0	0	0.14076	1	17567	17567		32.305	32.305	1	1459500			8049	295	4396	4396	10559	10559					0.019786097574751693
EYALLYHTL	9	Unmodified	_EYALLYHTL_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.781005859375	2	561.795132	1121.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.038	1	89.037	88.537	89.537	-0.00080872								0	0	0	0.19013	1	23533	23533		25.399	7.2643	1				8050	295	4396	4396	10560	10560					0.019786097574751693
EYALLYHTL	9	Unmodified	_EYALLYHTL_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	561.795132	1121.57571	0.1272	7.1458E-05	0.078657	4.4189E-05	0.20585	0.00011565	561.7950819873685	69.626	1.2028	69.626	69.147	70.35	0	-0.022319	3.9078E-05	NaN	32.305	103	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1559300			8051	295	4396	4396							0.019786097574751693
EYALLYHTL	9	Unmodified	_EYALLYHTL_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.795132	1121.57571	0.22111	0.00012422	0.016211	9.1072E-06	0.23732	0.00013333	561.7950298414503	69.605	1.1526	69.671	69.232	70.384	0.066048	0.022319	-3.1086E-05	NaN	32.305	98	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1459500			8052	295	4396	4396							0.019786097574751693
EYAPAVFQL	9	Unmodified	_EYAPAVFQL_					0	0	0		nc|ENSG00000198715|Q8WWB7-2|GLMP;ENSG00000198715|ENST00000362007|GLMP	nc|ENSG00000198715|Q8WWB7-2|GLMP	nc|ENSG00000198715|Q8WWB7-2|GLMP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2688598632812	2	519.26875	1036.52295	0.24717	0.00012835	0.6393	0.00033197	0.88647	0.00046032	519.268754862963	75.491	1.0056	75.491	75.043	76.049	0					83	36	3	0	0	0	0.0033114	1	19411	19411		99.799	51.453	1	1104100			8053	8106	4397	4397	10561	10561					0.006146516946728298
EYAPAVFQL	9	Unmodified	_EYAPAVFQL_					0	0	0		nc|ENSG00000198715|Q8WWB7-2|GLMP;ENSG00000198715|ENST00000362007|GLMP	nc|ENSG00000198715|Q8WWB7-2|GLMP	nc|ENSG00000198715|Q8WWB7-2|GLMP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2688598632812	2	519.26875	1036.52295	0.35529	0.00018449	0.42369	0.00022001	0.77898	0.0004045	519.2686357682718	75.477	1.4285	75.53	74.732	76.16	0.052361					107	52	3	0	0	0	0.023103	1	19370	19370		81.89	41.933	1	1098800			8054	8106	4397	4397	10562	10562					0.006146516946728298
EYAPAVFQL	9	Unmodified	_EYAPAVFQL_					0	0	0		nc|ENSG00000198715|Q8WWB7-2|GLMP;ENSG00000198715|ENST00000362007|GLMP	nc|ENSG00000198715|Q8WWB7-2|GLMP	nc|ENSG00000198715|Q8WWB7-2|GLMP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2688598632812	2	519.26875	1036.52295	0.4348	0.00022578	0.37459	0.00019451	0.80939	0.00042029	519.268548036253	75.58	1.2074	75.549	74.812	76.02	-0.031487					90	44	3	0	0	0	0.0042343	1	19403	19403		92.491	46.47	1	1131900			8055	8106	4397	4397	10563	10563					0.006146516946728298
EYAPNVPFL	9	Unmodified	_EYAPNVPFL_					0	0	0		ENST00000437982.1_1_2:130970445-130970847:-|nuORF;ENST00000489471.5_3_2:46787807-46808219:+|nuORF;ENSG00000119729|ENST00000238738|RHOQ	ENST00000437982.1_1_2:130970445-130970847:-|nuORF	ENST00000437982.1_1_2:130970445-130970847:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2686767578125	2	525.26875	1048.52295	0.69944	0.00036739	-0.84602	-0.00044439	-0.14659	-7.6997E-05	525.2680926542515	77.31	2.0338	77.366	76.621	78.655	0.055412					135	73	4	0	0	0	0.0023784	3	19952	19901;19952;20002		107.19	71.06	1	2189200			8056	2903	4398	4398	10564;10565;10566	10565					0.0006265169467951637
EYARLPKLY	9	Unmodified	_EYARLPKLY_					0	0	0		ENST00000490365.1_1_10:76737066-76741701:+|nuORF;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B	ENST00000490365.1_1_10:76737066-76741701:+|nuORF	ENST00000490365.1_1_10:76737066-76741701:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.7376098632812	2	576.824224	1151.63389	0.40459	0.00023338	-0.69835	-0.00040282	-0.29376	-0.00016945	576.8241841763391	63.54	0.72269	63.531	63.268	63.99	-0.0085564					41	25	2	0	0	0	0.20651	1	15771	15771		26.884	10.735	1	275740			8057	5247	4399	4399	10567	10567					0.06414291402757044
EYASFFAVM	9	Oxidation (M)	_EYASFFAVM(Oxidation (M))_		EYASFFAVM(1)		EYASFFAVM(110)	0	0	1		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7386474609375	2	540.738968	1079.46338	0.51638	0.00027923	-0.50948	-0.0002755	0.0069	3.7311E-06	540.7386530737926	71.279	0.56064	71.279	70.989	71.55	0					31	19	2	0	0	0	0.0020518	1	18125	18125		109.63	76.844	1	766620			8058	7564	4400	4400	10568	10568		831			-0.073169873110146
EYASFFAVM	9	Oxidation (M)	_EYASFFAVM(Oxidation (M))_		EYASFFAVM(1)		EYASFFAVM(82)	0	0	1		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7919311523438	2	540.738968	1079.46338	0.47543	0.00025708	-0.58426	-0.00031593	-0.10884	-5.8854E-05	540.7387376655506	71.168	0.48028	71.228	71.092	71.573	0.060783					26	16	2	0	0	0	0.012601	1	18076	18076		81.864	49.078	1	626870			8059	7564	4400	4400	10569	10569		831			-0.073169873110146
EYASFFAVM	9	Oxidation (M)	_EYASFFAVM(Oxidation (M))_		EYASFFAVM(1)		EYASFFAVM(89)	0	0	1		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7393798828125	2	540.738968	1079.46338	0.64069	0.00034645	-0.57971	-0.00031347	0.060985	3.2977E-05	540.7385810468745	71.348	0.63402	71.323	70.971	71.605	-0.024864					36	22	2	0	0	0	0.0046213	1	18180	18180		89.427	55.025	1	533950			8060	7564	4400	4400	10570	10570		831			-0.073169873110146
EYASVLQLL	9	Unmodified	_EYASVLQLL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2894897460938	2	518.289682	1034.56481	0.55123	0.0002857	-0.69578	-0.00036061	-0.14455	-7.4918E-05	518.2890209691079	87.331	0.72502	87.331	87.025	87.75	0					73	32	3	0	0	0	0.00063099	1	23033	23033		126.57	67.887	1	729650			8061	3863	4401	4401	10571	10571					0.048912073832070746
EYASVLQLL	9	Unmodified	_EYASVLQLL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2890625	2	518.289682	1034.56481	0.37955	0.00019672	-0.63532	-0.00032928	-0.25577	-0.00013256	518.2891103397529	87.158	0.75706	87.245	86.987	87.744	0.08709					84	34	3	0	0	0	0.0019475	1	22948	22948		110.67	51.996	1	1286800			8062	3863	4401	4401	10572	10572					0.048912073832070746
EYASVLQLL	9	Unmodified	_EYASVLQLL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2893676757812	2	518.289682	1034.56481	0.41712	0.00021619	-0.53207	-0.00027577	-0.11495	-5.9578E-05	518.2890658580769	87.309	0.78506	87.303	87.024	87.809	-0.0056229					92	38	4	0	0	0	0.0019475	1	22982	22982		110.67	51.996	1	1121600			8063	3863	4401	4401	10573	10573					0.048912073832070746
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7987670898438	2	557.798206	1113.58186	0.30998	0.00017291	0.10633	5.931E-05	0.41631	0.00023222	557.7982495335922	32.879	0.81124	32.879	32.582	33.393	0					65	28	4	0	0	0	3.4262E-07	2	6296	6296;6345		166.77	122.91	1	1297600			8064	726	4402	4402	10574;10575	10574					0.029611279890104925
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7984008789062	2	557.798206	1113.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.655	1	32.711	32.211	33.211	0.055309								0	0	0	4.7901000000000005E-24	1	6247	6247		192.32	116.56	1				8065	726	4402	4402	10576	10576					0.029611279890104925
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7984008789062	2	557.798206	1113.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.802	1	32.858	32.358	33.358	0.055309								0	0	0	2.1394E-06	1	6292	6292		121.5	79.548	1				8066	726	4402	4402	10577	10577					0.029611279890104925
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.79833984375	2	557.798206	1113.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.979	1	33.035	32.535	33.535	0.055309								0	0	0	0.12412	1	6346	6346		40.725	23.612	1				8067	726	4402	4402	10578	10578					0.029611279890104925
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7984619140625	2	557.798206	1113.58186	0.2473	0.00013794	0.096867	5.4032E-05	0.34417	0.00019198	557.7983499399132	32.816	0.62402	32.87	32.579	33.203	0.054371					58	22	4	0	0	0	3.4262E-07	3	6291	6245;6291;6345		166.77	114.5	1	1202300			8068	726	4402	4402	10579;10580;10581	10580					0.029611279890104925
EYAVLTSTI	9	Unmodified	_EYAVLTSTI_					0	0	0		ENSG00000168310|ENST00000393593|IRF2;nc|ENSG00000168310|P14316-2|IRF2	ENSG00000168310|ENST00000393593|IRF2	ENSG00000168310|ENST00000393593|IRF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7662353515625	2	498.76604	995.517527	0.49488	0.00024683	0.16318	8.139E-05	0.65806	0.00032822	498.7659529385163	63.611	0.74093	63.611	63.364	64.105	0					59	26	3	0	0	0	0.0001234	1	15751	15751		115.69	10.893	1	983670			8069	6267	4403	4403	10582	10582					0.01958928112196645
EYAVLTSTI	9	Unmodified	_EYAVLTSTI_					0	0	0		ENSG00000168310|ENST00000393593|IRF2;nc|ENSG00000168310|P14316-2|IRF2	ENSG00000168310|ENST00000393593|IRF2	ENSG00000168310|ENST00000393593|IRF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.76617431640625	2	498.76604	995.517527	0.50288	0.00025082	0.073216	3.6517E-05	0.57609	0.00028733	498.76594820043147	63.506	0.7043	63.602	63.365	64.069	0.095722					54	24	3	0	0	0	0.0028127	1	15767	15767		103.75	6.6736	1	1009900			8070	6267	4403	4403	10583	10583					0.01958928112196645
EYAVMLYTW	9	Oxidation (M)	_EYAVM(Oxidation (M))LYTW_		EYAVM(1)LYTW		EYAVM(110)LYTW	0	0	1		ENSG00000273749|ENST00000617928|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.2725830078125	2	596.273175	1190.5318	0.89422	0.0005332	-1.8096	-0.001079	-0.91538	-0.00054581	596.2725716495612	77.876	1.068	77.876	77.418	78.486	0					82	39	3	0	0	0	0.0022761	2	20099	20099;20147		108	68.04	1	581190			8071	8708;702	4404	4404	10584;10585	10584		87			-0.05584742731161896
EYAVMLYTW	9	Oxidation (M)	_EYAVM(Oxidation (M))LYTW_		EYAVM(1)LYTW		EYAVM(110)LYTW	0	0	1		ENSG00000273749|ENST00000617928|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.2737426757812	2	596.273175	1190.5318	0.85309	0.00050867	-1.5941	-0.0009505	-0.74098	-0.00044183	596.2726049217695	77.785	1.1556	77.841	77.284	78.439	0.055412					94	41	4	0	0	0	0.0017972	2	20087	20087;20137		112.59	64.247	1	434270			8072	8708;702	4404	4404	10586;10587	10586		87			-0.05584742731161896
EYAVMLYTW	9	Oxidation (M)	_EYAVM(Oxidation (M))LYTW_		EYAVM(1)LYTW		EYAVM(96)LYTW	0	0	1		ENSG00000273749|ENST00000617928|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.2736206054688	2	596.273175	1190.5318	0.92417	0.00055106	-2.0783	-0.0012392	-1.1541	-0.00068818	596.2725957168377	77.889	1.0386	77.858	77.288	78.326	-0.031204					69	37	3	0	0	0	0.0037552	1	20107	20107		96.285	56.327	1	427960			8073	8708;702	4404	4404	10588	10588		87			-0.05584742731161896
EYCTKKDSSL	10	Unmodified	_EYCTKKDSSL_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.1824951171875	2	587.276446	1172.53834	0.48049	0.00028218	0.32122	0.00018865	0.80171	0.00047083	587.7785963492822	72.545	0.40546	72.516	72.332	72.738	-0.029305					19	13	2	0	0	0	0.31358	1	18502	18502		13.906	1.3745	1	185070	+		8074	17474	4405	4405	10589	10589					-0.04102849570449507
EYDDLDNLAF	10	Unmodified	_EYDDLDNLAF_					0	0	0			REV__ENSG00000100304|ENST00000216129|TTLL12	REV__ENSG00000100304|ENST00000216129|TTLL12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.8628845214844	3	405.511909	1213.5139	-0.058205	-2.3603E-05	0.5033	0.0002041	0.4451	0.00018049	405.5120309399298	58.315	0.33484	58.4	58.336	58.671	0.085621					15	11	2	0	0	0	0.3198	1	14167	14167		4.1895	0.31317	1	197160	+		8075	14179	4406	4406	10590	10590					-0.08431786452320011
EYDLIVHQL	9	Unmodified	_EYDLIVHQL_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.3135375976562	2	565.298039	1128.58152	-0.19452	-0.00010996	-0.63308	-0.00035788	-0.82759	-0.00046784	565.2980979111788	59.882	1.3731	59.977	59.521	60.894	0.095093					120	49	3	0	0	0	0.18803	1	14825	14825		25.399	3.6527	1	13509000			8076	3079	4407	4407	10591	10591					0.022377082691491523
EYDLIVHQL	9	Unmodified	_EYDLIVHQL_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.6481323242188	2	565.298039	1128.58152	0.13186	7.4539E-05	-0.66857	-0.00037794	-0.53671	-0.0003034	565.2979707488164	59.974	1.2036	59.963	59.683	60.886	-0.011486					108	43	3	0	0	0	0.17242	1	14842	14842		36.127	21.289	1	13711000			8077	3079	4407	4407	10592	10592					0.022377082691491523
EYDLIVHQL	9	Unmodified	_EYDLIVHQL_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	565.298039	1128.58152	-0.10716	-6.0576E-05	-0.745	-0.00042115	-0.85216	-0.00048173	565.2980559188569	60.059	1.3196	60.059	59.56	60.88	0	0.059354	-7.1536E-05	NaN	36.127	97	47	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12237000			8078	3079	4407	4407							0.022377082691491523
EYDNFFQHL	9	Unmodified	_EYDNFFQHL_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.7699584960938	2	606.769645	1211.52474	0.64421	0.00039089	0.069973	4.2458E-05	0.71418	0.00043334	606.7696188743525	65.652	1.2539	65.652	65.319	66.573	0					140	44	5	0	0	0	5.5754E-11	7	16390	16341;16390;16438;16489;16549;16597;16654		185.05	185.05	1	6227800			8079	1012	4408	4408	10593;10594;10595;10596;10597;10598;10599	10594					-0.07256339287368974
EYDNFFQHL	9	Unmodified	_EYDNFFQHL_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.7700805664062	2	606.769645	1211.52474	0.36045	0.00021871	0.31077	0.00018857	0.67122	0.00040728	606.7697786765807	65.492	1.6148	65.581	65.295	66.91	0.088882					157	58	5	0	0	0	5.5754E-11	6	16384	16289;16335;16384;16435;16546;16608		185.05	185.05	1	6862000			8080	1012	4408	4408	10600;10601;10602;10603;10604;10605	10602					-0.07256339287368974
EYDNFFQHL	9	Unmodified	_EYDNFFQHL_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.77001953125	2	606.769645	1211.52474	0.46024	0.00027926	0.23787	0.00014433	0.69811	0.00042359	606.769760500319	65.638	1.4793	65.627	65.288	66.767	-0.011337					155	53	5	0	0	0	8.7734E-17	4	16376	16331;16376;16416;16464		216.57	189.68	1	7937000			8081	1012	4408	4408	10606;10607;10608;10609	10607					-0.07256339287368974
EYDPEARYL	9	Unmodified	_EYDPEARYL_					0	0	0			REV__ENSG00000101901|ENST00000394780|ALG13	REV__ENSG00000101901|ENST00000394780|ALG13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2688598632812	2	578.269478	1154.5244	0.60079	0.00034742	-0.65869	-0.0003809	-0.057903	-3.3484E-05	578.2688461223586	53.005	0.76236	53.061	52.772	53.535	0.056255					60	27	3	0	0	0	0.13748	1	12509	12509		32.786	4.2988	1	2003700	+		8082	14294	4409	4409	10610	10610					-0.046677590072249586
EYDPEARYL	9	Unmodified	_EYDPEARYL_					0	0	0			REV__ENSG00000101901|ENST00000394780|ALG13	REV__ENSG00000101901|ENST00000394780|ALG13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.268798828125	2	578.269478	1154.5244	0.34189	0.0001977	-0.44692	-0.00025844	-0.10503	-6.0734E-05	578.2689862666524	53.214	0.92619	53.204	52.889	53.815	-0.0096092					78	34	3	0	0	0	0.088443	1	12565	12565		39.95	7.6442	1	2123100	+		8083	14294	4409	4409	10611	10611					-0.046677590072249586
EYDPVIILI	9	Unmodified	_EYDPVIILI_					0	0	0		ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.8080444335938	2	537.807708	1073.60086	0.42029	0.00022604	-0.11208	-6.028E-05	0.30821	0.00016576	537.8076486734356	92.462	1.252	92.462	92.138	93.39	0					248	100	3	0	0	0	0.0030686	5	24585	24546;24585;24623;24662;24705		101.72	71.497	1	2866600			8084	6720	4410	4410	10612;10613;10614;10615;10616	10613					0.06700664560048608
EYDPVIILI	9	Unmodified	_EYDPVIILI_					0	0	0		ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.8079833984375	2	537.807708	1073.60086	0.38226	0.00020558	-0.088873	-4.7796E-05	0.29339	0.00015779	537.8076831357151	92.329	1.4072	92.419	92.085	93.492	0.089195					245	114	3	0	0	0	2.3185E-05	5	24541	24501;24541;24585;24624;24665		153.26	123.04	1	3651500			8085	6720	4410	4410	10617;10618;10619;10620;10621	10618					0.06700664560048608
EYDPVIILI	9	Unmodified	_EYDPVIILI_					0	0	0		ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	ENSG00000173409|ENST00000310256|ARV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.807861328125	2	537.807708	1073.60086	0.659	0.00035441	-0.29729	-0.00015988	0.36171	0.00019453	537.8075487566979	92.441	1.0476	92.442	92.114	93.161	0.00046539					190	82	3	0	0	0	0.00097449	4	24572	24530;24572;24617;24656		123.1	92.871	1	3499200			8086	6720	4410	4410	10622;10623;10624;10625	10623					0.06700664560048608
EYDTLFSLN	9	Unmodified	_EYDTLFSLN_					0	0	0			REV__NAV1|p.S387Y|1|0.25|ENSG00000134369|chr1:201718689-201718689|C/A|missense_variant	REV__NAV1|p.S387Y|1|0.25|ENSG00000134369|chr1:201718689-201718689|C/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.2587890625	2	551.258579	1100.50261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.536	1	41.632	41.132	42.132	0.096626								0	0	0	0.19534	1	8953	8953		24.021	4.5816	1		+		8087	22873	4411	4411	10626	10626					-0.043625637557852315
EYDVDYYAI	9	Unmodified	_EYDVDYYAI_					0	0	0			REV__ENST00000471856.1_1_1:146649692-146651075:+|nuORF	REV__ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7503051757812	2	575.750587	1149.48662	0.46903	0.00027005	-1.6094	-0.00092664	-1.1404	-0.00065659	575.7495197394773	63.548	0.89303	63.644	63.2	64.093	0.095722					54	31	3	0	0	0	0.24581	1	15780	15780		16.942	0	1	362700	+		8088	17357	4412	4412	10627	10627					-0.08214269992708978
EYDVIKFTK	9	Unmodified	_EYDVIKFTK_					0	0	0			REV__ENST00000498486.1_1_2:172336502-172337621:+|nuORF	REV__ENST00000498486.1_1_2:172336502-172337621:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2801513671875	2	571.808239	1141.60193	0.37635	0.0002152	0.42269	0.0002417	0.79903	0.00045689	571.808536714155	53.983	0.48259	53.967	53.63	54.113	-0.015923					22	17	2	0	0	0	0.24688	1	12706	12706		14.838	6.0929	1	189460	+		8089	21698	4413	4413	10628	10628					0.03678878928940321
EYDYSKPIQ	9	Unmodified	_EYDYSKPIQ_					0	0	0		ENST00000507522.1_1_5:251563-256495:+|nuORF;ENST00000515467.2_1_5:1572396-1576767:-|nuORF;ENST00000503674.5_1_5:250762-256532:+|nuORF;ENST00000515752.5_1_5:236500-256532:+|nuORF;nc|ENSG00000073578|P31040-3|SDHA;nc|ENSG00000073578|P31040-2|SDHA;ENSG00000073578|ENST00000264932|SDHA	ENST00000507522.1_1_5:251563-256495:+|nuORF	ENST00000507522.1_1_5:251563-256495:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7463989257812	2	571.771854	1141.52915	0.72246	0.00041308	-2.8857	-0.00165	-2.1632	-0.0012369	571.7693140785251	60.65	0.24247	60.65	60.577	60.819	0					12	8	2	0	0	0	0.24311	1	14873	14873		16.942	1.0951	1	210820			8090	1002	4414	4414	10629	10629					-0.03594874864461417
EYDYSKPIQ	9	Unmodified	_EYDYSKPIQ_					0	0	0		ENST00000507522.1_1_5:251563-256495:+|nuORF;ENST00000515467.2_1_5:1572396-1576767:-|nuORF;ENST00000503674.5_1_5:250762-256532:+|nuORF;ENST00000515752.5_1_5:236500-256532:+|nuORF;nc|ENSG00000073578|P31040-3|SDHA;nc|ENSG00000073578|P31040-2|SDHA;ENSG00000073578|ENST00000264932|SDHA	ENST00000507522.1_1_5:251563-256495:+|nuORF	ENST00000507522.1_1_5:251563-256495:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	571.771854	1141.52915	0.6925	0.00039595	0.060096	3.4361E-05	0.7526	0.00043031	572.2743607262476	60.586	0.34613	60.576	60.516	60.862	-0.0094566	-0.036608	0.0012638	NaN	16.942	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437260			8091	1002	4414	4414							-0.03594874864461417
EYEEMQVNL	9	Unmodified	_EYEEMQVNL_					0	0	0		nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-2|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.321044921875	2	577.755346	1153.49614	0.38993	0.00022528	-1.2896	-0.0007451	-0.89971	-0.00051981	577.7545403889624	82.639	0.77776	82.618	82.328	83.106	-0.020584					60	30	3	0	0	0	0.22674	1	21589	21589		22.736	4.5899	1	640560			8092	7669	4415	4415	10630	10630					-0.0744682497879694
EYEFTESLH	9	Unmodified	_EYEFTESLH_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;ENST00000506603.5_1_5:79034050-79057839:+|nuORF	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3206176757812	2	577.753661	1153.49277	0.39675	0.00022922	1.2787	0.00073878	1.6755	0.000968	577.7542599272997	82.595	0.81544	82.595	82.358	83.174	0					64	30	3	0	0	0	0.2451	1	21596	21596		15.847	4.2069	1	622650			8093	5828	4416	4416	10631	10631					-0.07783751761189706
EYEIEKLE	8	Unmodified	_EYEIEKLE_					0	0	0		ENST00000409195.5_2_2:168108454-168115870:+|nuORF;nc|ENSG00000163092|A4UGR9-7|XIRP2;nc|ENSG00000163092|A4UGR9-5|XIRP2;nc|ENSG00000163092|A4UGR9-4|XIRP2;nc|ENSG00000163092|A4UGR9-6|XIRP2	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8024291992188	2	526.760955	1051.50736	0.26051	0.00013722	0.55021	0.00028983	0.81071	0.00042705	526.7611204165968	64.998	0.5067	64.987	64.721	65.227	-0.011337					38	18	3	0	0	0	0.34131	1	16125	16125		12.532	0.89125	1	355220			8094	10242	4417	4417	10632	10632					-0.016336796130190123
EYELFEFR	8	Unmodified	_EYELFEFR_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45;ENST00000477558.1_1_1:150049710-150054979:+|nuORF	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2460327148438	2	566.769114	1131.52368	0.099412	5.6344E-05	-0.81397	-0.00046133	-0.71456	-0.00040499	566.769048307449	18.504	0.45788	18.504	18.332	18.79	0					27	15	2	0	0	0	0.34408	1	1945	1945		2.3027	0.24298	1	62792			8095	3986	4418	4418	10633	10633					-0.03682553656290111
EYELFEFR	8	Unmodified	_EYELFEFR_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45;ENST00000477558.1_1_1:150049710-150054979:+|nuORF	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2462158203125	2	566.769114	1131.52368	-0.10329	-5.8543E-05	-0.55012	-0.00031179	-0.65342	-0.00037034	566.7688856545991	18.632	0.44368	18.574	18.402	18.846	-0.058172					22	15	2	0	0	0	0.34408	1	2011	2011		2.3027	0	1	55276			8096	3986	4418	4418	10634	10634					-0.03682553656290111
EYELWALCL	9	Unmodified	_EYELWALCL_					0	0	0		nc|ENSG00000171798|Q76NI1-4|KNDC1;ENSG00000171798|ENST00000304613|KNDC1	nc|ENSG00000171798|Q76NI1-4|KNDC1	nc|ENSG00000171798|Q76NI1-4|KNDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2955932617188	2	570.275718	1138.53688	0.65557	0.00037386	-1.7518	-0.00099899	-1.0962	-0.00062514	570.7770391010969	52.984	0.49767	53.04	52.828	53.325	0.056259					31	17	2	0	0	0	0.21137	1	12530	12530		18.135	0	1	758640			8097	6575	4419	4419	10635	10635					-0.026844388685503873
EYELYMATL	9	Unmodified	_EYELYMATL_					0	0	0		ENSG00000112539|ENST00000230301|C6orf118	ENSG00000112539|ENST00000230301|C6orf118	ENSG00000112539|ENST00000230301|C6orf118	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.329345703125	2	566.765183	1131.51581	0.42726	0.00024216	-1.0161	-0.00057591	-0.58887	-0.00033375	566.7643648792954	82.546	1.9906	82.619	81.878	83.869	0.073097					223	80	5	0	0	0	0.19839	1	21550	21550		28.487	6.7402	1	10617000			8098	2440	4420	4420	10636	10636					-0.04468448968054872
EYELYMATL	9	Unmodified	_EYELYMATL_					0	0	0		ENSG00000112539|ENST00000230301|C6orf118	ENSG00000112539|ENST00000230301|C6orf118	ENSG00000112539|ENST00000230301|C6orf118	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3291015625	2	566.765183	1131.51581	0.39074	0.00022146	-1.1979	-0.0006789	-0.80711	-0.00045744	566.7643450418475	82.649	1.9117	82.628	81.961	83.873	-0.020584					227	77	6	0	0	0	0.20651	1	21587	21587		26.884	5.137	1	12453000			8099	2440	4420	4420	10637	10637					-0.04468448968054872
EYEVFDAPVYY	11	Unmodified	_EYEVFDAPVYY_					0	0	0			REV__nc|ENSG00000102893|Q93100-4|PHKB	REV__nc|ENSG00000102893|Q93100-4|PHKB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.5431213378906	3	465.543209	1393.6078	0.21426	9.9746E-05	-0.34287	-0.00015962	-0.12861	-5.9875E-05	465.54319338892833	16.714	0.94548	16.651	16.351	17.296	-0.062534					94	33	4	0	0	0	0.48212	1	1398	1398		0.45452	0	1	446690	+		8100	14339	4421	4421	10638	10638					-0.07326067350027188
EYFDLIFH	8	Unmodified	_EYFDLIFH_					0	0	0			REV__ENSG00000102384|ENST00000682095|CENPI	REV__ENSG00000102384|ENST00000682095|CENPI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7911987304688	2	542.260925	1082.5073	0.35719	0.00019369	0.9367	0.00050794	1.2939	0.00070163	542.2613126674429	24.001	0.61011	24.001	23.669	24.279	0					27	20	2	0	0	0	0.34218	1	3597	3597		9.3474	2.0582	1	101390	+		8101	14319	4422	4422	10639	10639					-0.030656348223601526
EYFESPFTI	9	Unmodified	_EYFESPFTI_					0	0	0		ENSG00000198938|ENST00000362079|MT-CO3	ENSG00000198938|ENST00000362079|MT-CO3	ENSG00000198938|ENST00000362079|MT-CO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.328857421875	2	566.763497	1131.51244	0.41247	0.00023377	2.3544	0.0013344	2.7669	0.0015682	566.7645735929544	82.609	2.01	82.609	81.944	83.954	0					207	75	5	0	0	0	0.0045119	1	21602	21602		103.75	75.261	1	10824000			8102	8167	4423	4423	10640	10640					-0.048053757504249006
EYFFEDHML	9	Unmodified	_EYFFEDHML_					0	0	0		ENST00000354416.7_1_X:118751886-118752201:-|nuORF	ENST00000354416.7_1_X:118751886-118752201:-|nuORF	ENST00000354416.7_1_X:118751886-118752201:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2323913574219	3	410.842713	1229.50631	-0.17	-6.9845E-05	0.62331	0.00025608	0.45331	0.00018624	410.8426660169084	26.415	0.68044	26.415	26.133	26.813	0					39	23	2	0	0	0	0.26099	1	4370	4370		2.9952	0.26005	1	144590			8103	9596	4424	4424	10641	10641					-0.09926217253610048
EYFIHYNR	8	Unmodified	_EYFIHYNR_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2744140625	2	571.274898	1140.53524	-0.089001	-5.0844E-05	-1.344	-0.00076781	-1.433	-0.00081865	571.2745440401945	13.625	0.50663	13.625	13.396	13.902	0					35	17	3	0	0	0	0.46491	1	494	494		0.69038	0	1	87100	+		8104	14066	4425	4425	10642	10642					-0.029403118423033447
EYFIHYNR	8	Unmodified	_EYFIHYNR_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2743530273438	2	571.274898	1140.53524	-0.12326	-7.0415E-05	-1.1951	-0.00068271	-1.3183	-0.00075313	571.2745087003889	13.681	0.53306	13.615	13.444	13.977	-0.066079					41	18	3	0	0	0	0.46491	1	521	521		0.69038	0	1	86226	+		8105	14066	4425	4425	10643	10643					-0.029403118423033447
EYFIHYNR	8	Unmodified	_EYFIHYNR_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	571.274898	1140.53524	-0.089001	-5.0844E-05	-1.344	-0.00076781	-1.433	-0.00081865	571.2745440401945	13.625	0.50663	13.625	13.396	13.902	0	0.020546	-0.00045218	NaN	0.69038	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87100	+		8106	14066	4425	4425							-0.029403118423033447
EYFIHYNR	8	Unmodified	_EYFIHYNR_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	571.274898	1140.53524	-0.12326	-7.0415E-05	-1.1951	-0.00068271	-1.3183	-0.00075313	571.2745087003889	13.681	0.53306	13.615	13.444	13.977	-0.066079	0.010779	-0.00028199	NaN	0.69038	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86226	+		8107	14066	4425	4425							-0.029403118423033447
EYFKSFNF	8	Unmodified	_EYFKSFNF_					0	0	0		ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.25341796875	2	541.2531	1080.49165	0.29945	0.00016208	0.45089	0.00024405	0.75034	0.00040613	541.2532281888747	61.219	0.48754	61.219	61.022	61.51	0					42	18	3	0	0	0	0.32038	1	15039	15039		28.487	10.352	1	947410			8108	4963	4426	4426	10644	10644					-0.045379213394198814
EYFKSFNF	8	Unmodified	_EYFKSFNF_					0	0	0		ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2532958984375	2	541.2531	1080.49165	0.24777	0.00013411	0.59467	0.00032187	0.84245	0.00045598	541.2532959978986	61.234	0.88424	61.331	61.093	61.978	0.096985					65	32	3	0	0	0	0.13277	1	15013	15013		54.774	31.625	1	1046900			8109	4963	4426	4426	10645	10645					-0.045379213394198814
EYFKSFNF	8	Unmodified	_EYFKSFNF_					0	0	0		ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.253662109375	2	541.2531	1080.49165	0.35645	0.00019293	0.64819	0.00035083	1.0046	0.00054376	541.253493117592	61.323	0.87744	61.313	61.077	61.954	-0.0094566					53	31	3	0	0	0	0.16948	1	15029	15029		48.346	18.121	1	1085100			8110	4963	4426	4426	10646	10646					-0.045379213394198814
EYFVFQDGK	9	Unmodified	_EYFVFQDGK_					0	0	0			REV__ENSG00000164062|ENST00000296456|APEH	REV__ENSG00000164062|ENST00000296456|APEH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2462158203125	2	566.769114	1131.52368	0.19011	0.00010775	-0.85113	-0.00048239	-0.66102	-0.00037465	566.7686628384115	18.655	0.50382	18.538	18.414	18.918	-0.11739					21	17	2	0	0	0	0.25988	1	2030	2030		3.9444	0.66309	1	69037	+		8111	17121	4427	4427	10647	10647					-0.03682553656290111
EYGENCICLY	10	Unmodified	_EYGENCICLY_					0	0	0			REV__ENSG00000187957|ENST00000341772|DNER	REV__ENSG00000187957|ENST00000341772|DNER	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.7442626953125	2	603.743924	1205.4733	0.70172	0.00042366	-0.16294	-9.8374E-05	0.53878	0.00032528	603.7439931634726	50.897	0.80877	50.906	50.593	51.402	0.0095634					91	30	5	0	0	0	0.2811	1	11822	11822		22.736	1.1993	1	3054400	+		8112	18532	4428	4428	10648	10648					-0.1212216736796563
EYGENFPML	9	Oxidation (M)	_EYGENFPM(Oxidation (M))L_		EYGENFPM(1)L		EYGENFPM(130)L	0	0	1		ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2393798828125	2	558.239332	1114.46411	0.16192	9.0393E-05	0.16126	9.0019E-05	0.32318	0.00018041	558.2394637223347	65.416	1.0508	65.416	65.017	66.068	0					78	37	3	0	0	0	0.00014042	1	16271	16271		134.3	82.027	1	1422800			8113	8019	4429	4429	10649	10649		876			-0.08854192661965499
EYGENFPML	9	Oxidation (M)	_EYGENFPM(Oxidation (M))L_		EYGENFPM(1)L		EYGENFPM(110)L	0	0	1		ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2394409179688	2	558.239332	1114.46411	0.14195	7.9243E-05	0.10111	5.6444E-05	0.24306	0.00013569	558.2392524466283	65.472	1.1328	65.561	65.006	66.139	0.088882					87	41	4	0	0	0	0.0016361	1	16304	16304		114.65	62.381	1	1574200			8114	8019	4429	4429	10650	10650		876			-0.08854192661965499
EYGENFPML	9	Oxidation (M)	_EYGENFPM(Oxidation (M))L_		EYGENFPM(1)L		EYGENFPM(150)L	0	0	1		ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2396240234375	2	558.239332	1114.46411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.178	1	65.267	64.767	65.767	0.088882								0	0	0	6.545E-11	1	16236	16236		152.41	84.332	1				8115	8019	4429	4429	10651	10651		876			-0.08854192661965499
EYGENFPML	9	Oxidation (M)	_EYGENFPM(Oxidation (M))L_		EYGENFPM(1)L		EYGENFPM(130)L	0	0	1		ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2394409179688	2	558.239332	1114.46411	-0.020369	-1.1371E-05	0.24212	0.00013516	0.22175	0.00012379	558.239420286712	65.275	0.48216	65.264	65.022	65.504	-0.011337					53	17	5	0	0	0	0.00014042	1	16261	16261		134.3	82.027	1	1449600			8116	8019	4429	4429	10652	10652		876			-0.08854192661965499
EYGENFPML	9	Oxidation (M)	_EYGENFPM(Oxidation (M))L_		EYGENFPM(1)L		EYGENFPM(110)L	0	0	1		ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2394409179688	2	558.239332	1114.46411	0.37209	0.00020771	-0.25873	-0.00014443	0.11336	6.3281E-05	558.2391491064069	65.601	0.74501	65.59	65.372	66.117	-0.011337					68	26	4	0	0	0	0.0019475	2	16344	16344;16395		110.67	66.816	1	1893800			8117	8019	4429	4429	10653;10654	10653		876			-0.08854192661965499
EYGFISQTL	9	Unmodified	_EYGFISQTL_					0	0	0		ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2640380859375	2	529.263665	1056.51278	0.57261	0.00030306	0.33546	0.00017755	0.90807	0.00048061	529.2637780542989	68.637	1.397	68.637	68.25	69.647	0					106	50	4	0	0	0	4.8913E-11	2	17323	17267;17323		187.3	119.22	1	2931400			8118	725	4430	4430	10655;10656	10656					-0.013219560305742561
EYGFISQTL	9	Unmodified	_EYGFISQTL_					0	0	0		ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2639770507812	2	529.263665	1056.51278	0.4013	0.00021239	0.40627	0.00021502	0.80757	0.00042742	529.2637534297917	68.595	1.3129	68.667	68.357	69.67	0.071938					110	47	4	0	0	0	5.4465E-12	2	17253	17253;17302		201.57	133.49	1	2791000			8119	725	4430	4430	10657;10658	10657					-0.013219560305742561
EYGFISQTL	9	Unmodified	_EYGFISQTL_					0	0	0		ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	ENSG00000057704|ENST00000261226|TMCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2640380859375	2	529.263665	1056.51278	0.53964	0.00028561	0.25298	0.00013389	0.79262	0.00041951	529.2636997698279	68.668	1.2789	68.649	68.345	69.624	-0.019157					98	45	4	0	0	0	5.4465E-12	2	17275	17275;17326		201.57	133.49	1	3469700			8120	725	4430	4430	10659;10660	10659					-0.013219560305742561
EYGFYHDFF	9	Unmodified	_EYGFYHDFF_					0	0	0		TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant;nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.7535400390625	2	612.753464	1223.49238	0.31562	0.0001934	0.5394	0.00033052	0.85502	0.00052392	613.2552357209065	71.463	0.64589	71.463	71.209	71.855	0					51	22	4	0	0	0	0.0041925	1	18151	18151		92.822	38.989	1	843480			8121	4506	4431	4431	10661	10661					-0.1104312669040155
EYGFYHDFF	9	Unmodified	_EYGFYHDFF_					0	0	0		TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant;nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.75390625	2	612.753464	1223.49238	0.26456	0.00016211	0.15151	9.2837E-05	0.41607	0.00025495	612.7534206407473	71.38	0.66155	71.441	71.21	71.872	0.060783					47	23	3	0	0	0	0.013258	2	18119	18119;18164		74.423	32.583	1	903520			8122	4506	4431	4431	10662;10663	10662					-0.1104312669040155
EYGFYHDFF	9	Unmodified	_EYGFYHDFF_					0	0	0		TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant;nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.75390625	2	612.753464	1223.49238	0.34617	0.00021212	0.080878	4.9558E-05	0.42705	0.00026167	612.7532968512655	71.548	0.94185	71.521	71.288	72.229	-0.027275					60	33	3	0	0	0	0.00268	2	18216	18167;18216		104.8	52.486	1	1322800			8123	4506	4431	4431	10664;10665	10665					-0.1104312669040155
EYGIFNQKI	9	Unmodified	_EYGIFNQKI_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2937622070312	2	556.292756	1110.57096	0.59744	0.00033235	0.58136	0.00032341	1.1788	0.00065576	556.2929019827334	54.496	0.98999	54.56	54.142	55.132	0.063202					72	35	3	0	0	0	9.2305E-05	1	12956	12956		142.08	94.331	1	3163600			8124	1603	4432	4432	10666	10666					0.02009725614720992
EYGIFNQKI	9	Unmodified	_EYGIFNQKI_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.293212890625	2	556.292756	1110.57096	0.58697	0.00032653	0.55359	0.00030796	1.1406	0.00063448	556.2930160652027	54.808	1.1858	54.792	54.251	55.437	-0.015923					93	40	3	0	0	0	2.8439E-05	1	13059	13059		152.41	100.14	1	3642800			8125	1603	4432	4432	10667	10667					0.02009725614720992
EYGIFNQKI	9	Unmodified	_EYGIFNQKI_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000530336.2_1_14:51390668-51411121:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	556.292756	1110.57096	0.6405	0.00035631	0.54752	0.00030458	1.188	0.00066089	556.2929495901485	54.572	1.1214	54.572	54.076	55.198	0	-0.069089	-1.2682E-05	NaN	152.41	90	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3154000			8126	1603	4432	4432							0.02009725614720992
EYGKFFVTL	9	Unmodified	_EYGKFFVTL_					0	0	0		ENST00000575656.5_1_16:24960717-24971282:-|nuORF;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17	ENST00000575656.5_1_16:24960717-24971282:-|nuORF	ENST00000575656.5_1_16:24960717-24971282:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2918090820312	2	552.292225	1102.5699	0.33982	0.00018768	-2.3766	-0.0013126	-2.0368	-0.0011249	552.2908641084814	67.366	1.0336	67.366	66.937	67.97	0					166	35	7	0	0	0	0.0016712	2	16866	16866;16918		114.2	0	1	19921000			8127	4333	4433	4433	10668;10669	10668					0.02271511245817237
EYGKFFVTL	9	Unmodified	_EYGKFFVTL_					0	0	0		ENST00000575656.5_1_16:24960717-24971282:-|nuORF;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17	ENST00000575656.5_1_16:24960717-24971282:-|nuORF	ENST00000575656.5_1_16:24960717-24971282:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2918090820312	2	552.292225	1102.5699	0.36997	0.00020433	-2.5171	-0.0013902	-2.1471	-0.0011858	552.2908392760921	67.238	1.0764	67.316	66.899	67.975	0.078041					166	37	6	0	0	0	0.00078391	3	16882	16833;16839;16882		125.53	0	1	21093000			8128	4333	4433	4433	10670;10671;10672	10672					0.02271511245817237
EYGKFFVTL	9	Unmodified	_EYGKFFVTL_					0	0	0		ENST00000575656.5_1_16:24960717-24971282:-|nuORF;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17	ENST00000575656.5_1_16:24960717-24971282:-|nuORF	ENST00000575656.5_1_16:24960717-24971282:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2918701171875	2	552.292225	1102.5699	0.21507	0.00011878	-2.4113	-0.0013317	-2.1962	-0.0012129	552.2908201468244	67.354	1.048	67.338	66.893	67.941	-0.016296					162	35	6	0	0	0	0.00078391	2	16920	16870;16920		125.53	0	1	23072000			8129	4333	4433	4433	10673;10674	10674					0.02271511245817237
EYGKVEFVF	9	Unmodified	_EYGKVEFVF_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000479185.1_1_2:218746916-218750490:-|nuORF;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2839965820312	2	559.281857	1116.54916	0.38877	0.00021743	0.97782	0.00054688	1.3666	0.00076431	559.2827800341425	63.483	1.9211	63.483	63.039	64.96	0					232	70	5	0	0	0	0.0042138	6	15693	15679;15693;15737;15787;15838;15890		92.653	46.632	1	34520000			8130	1129;12595	4434	4434	10675;10676;10677;10678;10679;10680	10676					-0.004450791338513227
EYGKVEFVF	9	Unmodified	_EYGKVEFVF_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000479185.1_1_2:218746916-218750490:-|nuORF;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2918090820312	2	559.281857	1116.54916	0.52049	0.0002911	-1.2106	-0.00067709	-0.69015	-0.00038599	559.2814836657403	66.06	0.38981	66.06	65.927	66.317	0					17	13	2	0	0	0	0.12642	1	16541	16541		34.402	0.29928	1	83154			8131	1129;12595	4434	4434	10681	10681					-0.004450791338513227
EYGKVEFVF	9	Unmodified	_EYGKVEFVF_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000479185.1_1_2:218746916-218750490:-|nuORF;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2915649414062	2	559.281857	1116.54916	0.39727	0.00022219	-1.3793	-0.0007714	-0.98199	-0.00054921	559.2809739196318	66.48	0.69772	66.48	66.183	66.881	0					28	20	2	0	0	0	0.14076	1	16641	16641		32.305	3.8186	1	123800			8132	1129;12595	4434	4434	10682	10682					-0.004450791338513227
EYGKVEFVF	9	Unmodified	_EYGKVEFVF_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000479185.1_1_2:218746916-218750490:-|nuORF;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2837524414062	2	559.281857	1116.54916	0.45214	0.00025287	0.87417	0.00048891	1.3263	0.00074178	559.2827925385178	63.344	2.3202	63.44	62.957	65.277	0.095726					246	84	5	0	0	0	0.0042138	7	15650	15632;15650;15702;15745;15789;15842;15895		92.653	52.696	1	34930000			8133	1129;12595	4434	4434	10683;10684;10685;10686;10687;10688;10689	10684					-0.004450791338513227
EYGKVEFVF	9	Unmodified	_EYGKVEFVF_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000479185.1_1_2:218746916-218750490:-|nuORF;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2921752929688	2	559.281857	1116.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.003	1	66.087	65.587	66.587	0.083832								0	0	0	0.15136	1	16488	16488		34.402	0.29928	1				8134	1129;12595	4434	4434	10690	10690					-0.004450791338513227
EYGKVEFVF	9	Unmodified	_EYGKVEFVF_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000479185.1_1_2:218746916-218750490:-|nuORF;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.283203125	2	559.281857	1116.54916	0.40504	0.00022653	0.94673	0.00052949	1.3518	0.00075602	559.2828487465164	63.531	2.2994	63.523	63.051	65.351	-0.0085564					228	83	5	0	0	0	0.0042138	7	15729	15680;15729;15778;15828;15871;15915;15937		92.653	52.696	1	37855000			8135	1129;12595	4434	4434	10691;10692;10693;10694;10695;10696;10697	10692					-0.004450791338513227
EYGKVEFVF	9	Unmodified	_EYGKVEFVF_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000479185.1_1_2:218746916-218750490:-|nuORF;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	559.281857	1116.54916	0.082239	4.5995E-05	-0.88411	-0.00049447	-0.80188	-0.00044847	559.2819343459365	66.883	0.13564	66.869	66.817	66.953	-0.013588	0.19441	0.00044795	NaN	32.305	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53261			8136	1129;12595	4434	4434							-0.004450791338513227
EYGRLALGLA	10	Unmodified	_EYGRLALGLA_					0	0	0			REV__ENST00000377991.8_1_9:35853833-35854379:+|nuORF	REV__ENST00000377991.8_1_9:35853833-35854379:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2926025390625	2	531.800749	1061.58694	0.63563	0.00033803	0.41984	0.00022327	1.0555	0.0005613	532.3022718770329	57.166	0.42814	57.166	57.038	57.466	0					19	15	2	0	0	0	0.30958	1	13765	13765		19.257	2.3147	1	177090	+		8137	20514	4435	4435	10698	10698					0.058614318515992636
EYGRLALGLA	10	Unmodified	_EYGRLALGLA_					0	0	0			REV__ENST00000377991.8_1_9:35853833-35854379:+|nuORF	REV__ENST00000377991.8_1_9:35853833-35854379:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.800749	1061.58694	0.63563	0.00033803	0.41984	0.00022327	1.0555	0.0005613	532.3022718770329	57.166	0.42814	57.166	57.038	57.466	0	0	0	NaN	19.257	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177090	+		8138	20514	4435	4435							0.058614318515992636
EYGSIIAFF	9	Unmodified	_EYGSIIAFF_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214;NUP214|p.S1207Wfs*17|1|0.3|ENSG00000126883|chr9:131192252-131192253|TC/-|frameshift_variant	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.763427734375	2	523.7633	1045.51205	0.42776	0.00022405	0.10861	5.6884E-05	0.53637	0.00028093	523.7632817846202	92.476	0.58621	92.476	92.259	92.845	0					99	44	3	0	0	0	0.013276	3	24589	24589;24629;24635		74.396	36.245	1	331000			8139	3299	4436	4436	10699;10700;10701	10699					-0.008887506796099842
EYGSIIAFF	9	Unmodified	_EYGSIIAFF_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214;NUP214|p.S1207Wfs*17|1|0.3|ENSG00000126883|chr9:131192252-131192253|TC/-|frameshift_variant	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.7633666992188	2	523.7633	1045.51205	0.42991	0.00022517	0.027775	1.4547E-05	0.45768	0.00023972	523.7632824846709	92.334	0.71423	92.424	92.187	92.901	0.089203					113	52	3	0	0	0	0.013276	3	24529	24529;24569;24613		74.396	36.245	1	686240			8140	3299	4436	4436	10702;10703;10704	10702					-0.008887506796099842
EYGSIIAFF	9	Unmodified	_EYGSIIAFF_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214;NUP214|p.S1207Wfs*17|1|0.3|ENSG00000126883|chr9:131192252-131192253|TC/-|frameshift_variant	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.763427734375	2	523.7633	1045.51205	0.6305	0.00033023	-0.03377	-1.7687E-05	0.59673	0.00031255	523.7631799677584	92.464	0.7502	92.465	92.205	92.955	0.00046539					112	54	3	0	0	0	0.013276	3	24564	24564;24607;24645		74.396	36.245	1	719180			8141	3299	4436	4436	10705;10706;10707	10705					-0.008887506796099842
EYGVIRDVL	9	Unmodified	_EYGVIRDVL_					0	0	0		ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD	ENSG00000049239|ENST00000377403|H6PD	ENSG00000049239|ENST00000377403|H6PD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2928466796875	2	532.292756	1062.57096	0.62052	0.0003303	3.4548	0.001839	4.0753	0.0021693	532.2924414505704	56.919	1.364	56.919	56.241	57.605	0					155	50	6	0	0	0	0.00051734	1	13715	13715		128.93	72.755	1	3688600			8142	647	4437	4437	10708	10708					0.04217725614716983
EYGVIRDVL	9	Unmodified	_EYGVIRDVL_					0	0	0		ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD	ENSG00000049239|ENST00000377403|H6PD	ENSG00000049239|ENST00000377403|H6PD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.29296875	2	532.292756	1062.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.86	1	56.938	56.438	57.438	0.078674								0	0	0	1.3123E-06	1	13680	13680		128.93	72.755	1				8143	647	4437	4437	10709	10709					0.04217725614716983
EYGVIRDVL	9	Unmodified	_EYGVIRDVL_					0	0	0		ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD	ENSG00000049239|ENST00000377403|H6PD	ENSG00000049239|ENST00000377403|H6PD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2927856445312	2	532.292756	1062.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.019	1	57	56.5	57.5	-0.019081								0	0	0	1.3123E-06	1	13726	13726		128.93	72.755	1				8144	647	4437	4437	10710	10710					0.04217725614716983
EYHKMVAF	8	Unmodified	_EYHKMVAF_					0	0	0		ENSG00000220948|ENST00000534741|TRIM51G	ENSG00000220948|ENST00000534741|TRIM51G	ENSG00000220948|ENST00000534741|TRIM51G	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2827758789062	2	512.74967	1023.48479	0.14175	7.2683E-05	4.4138	0.0022632	4.5555	0.0023358	513.2541600642722	18.707	0.49949	18.707	18.479	18.978	0					29	17	3	0	0	0	0.34319	1	2048	2048		5.7604	0.52976	1	60674			8145	8418	4438	4438	10711	10711					-0.02601557491652784
EYIEALELM	9	Unmodified	_EYIEALELM_					0	0	0		nc|ENSG00000186684|Q4G0S4-1|CYP27C1;ENSG00000186684|ENST00000664447|CYP27C1;nc|ENSG00000186684|Q4G0S4|CYP27C1	nc|ENSG00000186684|Q4G0S4-1|CYP27C1	nc|ENSG00000186684|Q4G0S4-1|CYP27C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.305419921875	2	555.773008	1109.53146	0.52577	0.00029221	2.9062	0.0016152	3.4319	0.0019074	556.2752792237796	66.155	0.69292	66.155	65.821	66.514	0					51	24	3	0	0	0	0.065123	1	16650	16650		54.774	31.625	1	666880			8146	7638	4439	4439	10712	10712					-0.018921624510539914
EYIEALELM	9	Unmodified	_EYIEALELM_					0	0	0		nc|ENSG00000186684|Q4G0S4-1|CYP27C1;ENSG00000186684|ENST00000664447|CYP27C1;nc|ENSG00000186684|Q4G0S4|CYP27C1	nc|ENSG00000186684|Q4G0S4-1|CYP27C1	nc|ENSG00000186684|Q4G0S4-1|CYP27C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3053588867188	2	555.773008	1109.53146	0.31055	0.0001726	3.3405	0.0018565	3.651	0.0020291	556.2757428794216	66.194	0.73895	66.18	65.772	66.511	-0.013588					74	26	4	0	0	0	0.19839	1	16643	16643		28.487	12.64	1	433860			8147	7638	4439	4439	10713	10713					-0.018921624510539914
EYIGGFLSLF	10	Unmodified	_EYIGGFLSLF_					0	0	0			REV__ENST00000485667.1_1_3:184073137-184079267:-|nuORF	REV__ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.2843627929688	2	573.297507	1144.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.745	1	61.736	61.236	62.236	-0.0085526								0	0	0	0.32028	1	15181	15181		25.399	1.3787	1		+		8148	14851	4440	4440	10714	10714					0.013954939002360334
EYIHALTLL	9	Unmodified	_EYIHALTLL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.8057250976562	2	536.8055	1071.59645	0.48661	0.00026121	0.16116	8.6512E-05	0.64777	0.00034773	536.8055916096096	67.632	0.99049	67.632	67.338	68.329	0					94	35	4	0	0	0	0.006189	3	16958	16958;17003;17047		85.272	27.801	1	3339100			8149	3575	4441	4441	10715;10716;10717	10715					0.06351200137146407
EYIHALTLL	9	Unmodified	_EYIHALTLL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.8057861328125	2	536.8055	1071.59645	0.47208	0.00025342	0.15954	8.5642E-05	0.63162	0.00033906	536.8055886688268	67.518	1.0132	67.596	67.296	68.31	0.078041					99	35	5	0	0	0	0.006189	3	16958	16911;16958;17003		85.272	36.926	1	3124000			8150	3575	4441	4441	10718;10719;10720	10719					0.06351200137146407
EYIHALTLL	9	Unmodified	_EYIHALTLL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.8058471679688	2	536.8055	1071.59645	0.4139	0.00022219	0.27353	0.00014683	0.68744	0.00036902	536.8056379876954	67.64	1.0763	67.624	67.323	68.399	-0.016296					96	37	4	0	0	0	0.006189	3	16986	16939;16986;17033		85.272	36.926	1	2651800			8151	3575	4441	4441	10721;10722;10723	10722					0.06351200137146407
EYIHNFKLL	9	Unmodified	_EYIHNFKLL_					0	0	0		nc|ENSG00000166974|Q15555-2|MAPRE2;nc|ENSG00000166974|Q15555-4|MAPRE2;nc|ENSG00000166974|Q15555-5|MAPRE2;nc|ENSG00000166974|Q15555-3|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2	nc|ENSG00000166974|Q15555-2|MAPRE2	nc|ENSG00000166974|Q15555-2|MAPRE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.2924194335938	2	588.824224	1175.63389	0.46196	0.00027201	-0.64711	-0.00038103	-0.18515	-0.00010902	588.8235293207033	53.253	0.37571	53.253	53.038	53.414	0					18	13	2	0	0	0	0.15943	1	12567	12567		39.95	8.6814	1	241060			8152	6137	4442	4442	10724	10724					0.05310291402770417
EYIHNFKLL	9	Unmodified	_EYIHNFKLL_					0	0	0		nc|ENSG00000166974|Q15555-2|MAPRE2;nc|ENSG00000166974|Q15555-4|MAPRE2;nc|ENSG00000166974|Q15555-5|MAPRE2;nc|ENSG00000166974|Q15555-3|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2	nc|ENSG00000166974|Q15555-2|MAPRE2	nc|ENSG00000166974|Q15555-2|MAPRE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.2927856445312	2	588.824224	1175.63389	0.53282	0.00031374	-1.0555	-0.00062151	-0.52269	-0.00030777	588.8228904943293	53.177	0.3614	53.234	53.043	53.404	0.056255					14	12	2	0	0	0	0.12563	1	12526	12526		47.749	11.622	1	250300			8153	6137	4442	4442	10725	10725					0.05310291402770417
EYIHNFKLL	9	Unmodified	_EYIHNFKLL_					0	0	0		nc|ENSG00000166974|Q15555-2|MAPRE2;nc|ENSG00000166974|Q15555-4|MAPRE2;nc|ENSG00000166974|Q15555-5|MAPRE2;nc|ENSG00000166974|Q15555-3|MAPRE2;ENSG00000166974|ENST00000300249|MAPRE2	nc|ENSG00000166974|Q15555-2|MAPRE2	nc|ENSG00000166974|Q15555-2|MAPRE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.2925415039062	2	588.824224	1175.63389	0.45283	0.00026664	-0.83355	-0.00049081	-0.38072	-0.00022418	588.8232968484201	53.406	0.33813	53.396	53.247	53.585	-0.0096054					18	12	2	0	0	0	0.042824	1	12611	12611		75.761	35.811	1	204250			8154	6137	4442	4442	10726	10726					0.05310291402770417
EYIIEYPHF	9	Unmodified	_EYIIEYPHF_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.7926025390625	2	605.792589	1209.57063	0.47714	0.00028905	-0.02404	-1.4563E-05	0.4531	0.00027448	605.7923769273474	68.265	0.85961	68.265	67.783	68.643	0					74	31	3	0	0	0	0.00268	1	17139	17139		104.8	78.531	1	1516600			8155	2470	4443	4443	10727	10727					-0.02577694105161754
EYIIEYPHF	9	Unmodified	_EYIIEYPHF_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.792724609375	2	605.792589	1209.57063	0.48843	0.00029588	-0.12189	-7.3837E-05	0.36654	0.00022205	605.7924050450066	68.234	1.2712	68.306	67.858	69.129	0.071938					101	46	3	0	0	0	0.0014051	2	17142	17091;17142		117.6	87.758	1	1341600			8156	2470	4443	4443	10728;10729	10729					-0.02577694105161754
EYIIEYPHF	9	Unmodified	_EYIIEYPHF_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.7926025390625	2	605.792589	1209.57063	0.39694	0.00024046	-0.079836	-4.8364E-05	0.3171	0.0001921	605.792415351301	68.305	1.2778	68.286	67.906	69.184	-0.019157					87	45	3	0	0	0	0.0014051	2	17138	17138;17188		117.6	84.813	1	1592200			8157	2470	4443	4443	10730;10731	10730					-0.02577694105161754
EYIIKPNWS	9	Unmodified	_EYIIKPNWS_					0	0	0			REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ENSG00000066739|ENST00000359933|ATG2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3189086914062	2	575.300581	1148.58661	0.34318	0.00019743	-0.51856	-0.00029833	-0.17538	-0.0001009	575.3010056832829	57.001	0.45028	57.001	56.823	57.273	0					35	16	3	0	0	0	0.14076	1	13745	13745		32.305	7.6316	1	265440	+		8158	13683	4444	4444	10732	10732					0.018260121317553057
EYIIKPNWS	9	Unmodified	_EYIIKPNWS_					0	0	0			REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ENSG00000066739|ENST00000359933|ATG2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3185424804688	2	575.300581	1148.58661	0.36588	0.00021049	-0.5139	-0.00029565	-0.14803	-8.5161E-05	575.3004313927069	56.927	0.72725	57.006	56.756	57.484	0.078674					47	26	3	0	0	0	0.14076	2	13644	13644;13693		32.305	11.852	1	268050	+		8159	13683	4444	4444	10733;10734	10733					0.018260121317553057
EYIKFLRSI	9	Unmodified	_EYIKFLRSI_					0	0	0		ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF	ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.8406372070312	2	584.839874	1167.66519	0.43472	0.00025424	0.98342	0.00057514	1.4181	0.00082939	584.8405831890037	55.165	0.71466	55.165	54.943	55.658	0					68	25	3	0	0	0	0.00082904	1	13138	13138		124.95	73.323	1	2954600			8160	7884	4445	4445	10735	10735					0.08806864436837714
EYIKFLRSI	9	Unmodified	_EYIKFLRSI_					0	0	0		ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF	ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3299560546875	2	584.839874	1167.66519	0.51348	0.0003003	1.0943	0.00064	1.6078	0.0009403	584.8406853584452	55.112	0.72356	55.182	54.922	55.646	0.070885					63	26	3	0	0	0	0.2422	1	13248	13248		19.362	1.2156	1	2866800			8161	7884	4445	4445	10736	10736					0.08806864436837714
EYIKFLRSI	9	Unmodified	_EYIKFLRSI_					0	0	0		ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF	ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8414916992188	2	584.839874	1167.66519	0.37477	0.00021918	1.291	0.00075504	1.6658	0.00097422	584.8407749366094	55.371	0.69536	55.352	55.129	55.824	-0.019077					63	25	3	0	0	0	0.0031966	2	13191	13185;13191		100.71	49.079	1	3669500			8162	7884	4445	4445	10737;10738	10738					0.08806864436837714
EYIKWSQQK	9	Unmodified	_EYIKWSQQK_					0	0	0			REV__L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|31|2|sense	REV__L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|31|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.3160400390625	2	605.316763	1208.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.925	1	88.925	88.425	89.425	0								0	0	0	0.25631	1	23510	23510		4.3292	0	1		+		8163	22790	4446	4446	10739	10739					0.023007995347597898
EYILALNEL	9	Unmodified	_EYILALNEL_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2949829101562	2	539.294965	1076.57538	0.56896	0.00030684	0.30824	0.00016623	0.8772	0.00047307	539.2948281007905	82.301	0.57005	82.301	82.081	82.651	0					41	20	3	0	0	0	0.032589	1	21492	21492		59.368	9.8141	1	464700			8164	5086	4447	4447	10740	10740					0.040151900376031335
EYILALNEL	9	Unmodified	_EYILALNEL_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2950439453125	2	539.294965	1076.57538	0.41741	0.00022511	1.2224	0.00065921	1.6398	0.00088432	539.2950357590714	82.203	1.4205	82.272	81.95	83.37	0.068993					84	51	3	0	0	0	0.01909	1	21457	21457		65.474	9.9709	1	481430			8165	5086	4447	4447	10741	10741					0.040151900376031335
EYILALNEL	9	Unmodified	_EYILALNEL_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.295166015625	2	539.294965	1076.57538	0.61331	0.00033076	0.17112	9.2287E-05	0.78443	0.00042304	539.2947076869248	82.359	0.75912	82.338	81.935	82.694	-0.020584					45	29	2	0	0	0	0.073988	1	21483	21483		43.982	9.0498	1	412950			8166	5086	4447	4447	10742	10742					0.040151900376031335
EYILVPSTF	9	Unmodified	_EYILVPSTF_					0	0	0		ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.78466796875	2	534.784233	1067.55391	0.5733	0.00030659	-1.8807	-0.0010058	-1.3074	-0.00069918	534.7839056332625	79.478	0.76968	79.478	79.184	79.953	0					68	29	4	0	0	0	0.019896	2	20647	20602;20647		64.236	38.837	1	925550			8167	5628	4448	4448	10743;10744	10744					0.02283805008892159
EYILVPSTF	9	Unmodified	_EYILVPSTF_					0	0	0		ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7841186523438	2	534.784233	1067.55391	0.59309	0.00031717	-1.646	-0.00088024	-1.0529	-0.00056306	534.7839224803148	79.549	0.71272	79.52	79.207	79.919	-0.028931					79	27	4	0	0	0	0.12743	1	20597	20597		46.021	23.285	1	992130			8168	5628	4448	4448	10745	10745					0.02283805008892159
EYILYLKNN	9	Unmodified	_EYILYLKNN_					0	0	0		ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.2850341796875	2	585.313689	1168.61282	0.43676	0.00025564	-1.2514	-0.00073244	-0.81459	-0.00047679	585.3133459826494	49.527	0.62653	49.527	49.267	49.894	0					34	22	2	0	0	0	0.25202	1	11522	11522		10.824	0.75	1	243810			8169	4988	4449	4449	10746	10746					0.035262813032204576
EYIMEMCSE	9	Unmodified	_EYIMEMCSE_					0	0	0			REV__ENST00000546624.2_1_12:88177101-88177509:-|nuORF	REV__ENST00000546624.2_1_12:88177101-88177509:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2462768554688	2	567.711236	1133.40792	0.10086	5.7258E-05	0.14733	8.3642E-05	0.24819	0.0001409	567.7113599314681	18.445	0.65112	18.445	18.188	18.839	0					26	22	2	0	0	0	0.26257	1	1990	1990		0.52476	0	1	40085	+		8170	22170	4450	4450	10747	10747					-0.15344904885296273
EYIPEGEILVI	11	Unmodified	_EYIPEGEILVI_					0	0	0		ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP	ENSG00000023734|ENST00000419869|STRAP	ENSG00000023734|ENST00000419869|STRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.8475341796875	2	637.847561	1273.68057	0.79344	0.0005061	-0.61147	-0.00039003	0.18197	0.00011607	637.8469505300686	84.672	0.39647	84.659	84.493	84.889	-0.01284					22	15	2	0	0	0	0.26959	1	22229	22229		38.176	28.102	1	101340			8171	526	4451	4451	10748	10748					0.05467686443398634
EYIPKWEQF	9	Unmodified	_EYIPKWEQF_					0	0	0		ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3053588867188	2	620.305864	1238.59717	0.083287	5.1664E-05	-0.5347	-0.00033168	-0.45142	-0.00028002	620.3053625437344	61.249	0.75596	61.249	61.08	61.836	0					71	28	4	0	0	0	0.0098873	2	15043	15043;15095		79.596	45.195	1	1340000			8172	2564	4452	4452	10749;10750	10749					-0.012580052138218889
EYIPKWEQF	9	Unmodified	_EYIPKWEQF_					0	0	0		ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3056030273438	2	620.305864	1238.59717	-0.1551	-9.6209E-05	-0.4156	-0.0002578	-0.5707	-0.00035401	620.30549752548	61.222	0.7269	61.319	61.14	61.867	0.096985					63	26	3	0	0	0	0.0098873	3	15020	14975;15020;15073		79.596	45.195	1	1574600			8173	2564	4452	4452	10751;10752;10753	10752					-0.012580052138218889
EYIPKWEQF	9	Unmodified	_EYIPKWEQF_					0	0	0		ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.305419921875	2	620.305864	1238.59717	-0.0060152	-3.7313E-06	-0.42793	-0.00026545	-0.43394	-0.00026918	620.3053593817313	61.305	0.85341	61.295	61.077	61.93	-0.0094566					75	30	4	0	0	0	0.0046246	2	15030	15030;15084		89.401	54.999	1	1656800			8174	2564	4452	4452	10754;10755	10754					-0.012580052138218889
EYIQFVPLL	9	Unmodified	_EYIQFVPLL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.31591796875	2	561.3157	1120.61685	0.13062	7.3318E-05	0.61864	0.00034725	0.74926	0.00042057	561.3158095376741	94.267	1.6474	94.267	93.478	95.125	0					330	142	3	0	0	0	0.0028626	4	25118	25118;25156;25190;25226		103.35	55.008	1	2649200			8175	7123	4453	4453	10756;10757;10758;10759	10756					0.06136370796957635
EYIQFVPLL	9	Unmodified	_EYIQFVPLL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.31591796875	2	561.3157	1120.61685	0.28282	0.00015875	0.50721	0.0002847	0.79002	0.00044345	561.3157307760767	94.192	1.4054	94.278	93.765	95.17	0.08667					345	116	4	0	0	0	0.0016361	5	25114	25076;25114;25151;25192;25245		114.65	67.23	1	3290700			8176	7123	4453	4453	10760;10761;10762;10763;10764	10761					0.06136370796957635
EYIQFVPLL	9	Unmodified	_EYIQFVPLL_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3157958984375	2	561.3157	1120.61685	0.35899	0.0002015	0.33856	0.00019004	0.69755	0.00039154	561.3156816094114	94.29	1.1632	94.288	93.945	95.108	-0.0020142					313	94	5	0	0	0	0.00070271	4	25116	25078;25116;25155;25195		126.57	78.22	1	3679400			8177	7123	4453	4453	10765;10766;10767;10768	10766					0.06136370796957635
EYIQKNVQL	9	Unmodified	_EYIQKNVQL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3638305664062	2	567.811313	1133.60807	0.048221	2.7381E-05	0.075999	4.3153E-05	0.12422	7.0534E-05	567.8111624001906	41.209	0.39531	41.209	40.96	41.355	0					22	14	2	0	0	0	0.21389	1	8880	8880		25.399	4.9457	1	234230			8178	3255	4454	4454	10769	10769					0.04661397160475644
EYIRSLNQF	9	Unmodified	_EYIRSLNQF_					0	0	0		ENST00000591367.5_1_18:21109371-21111665:+|nuORF;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENSG00000141452|ENST00000269221|RMC1	ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENST00000591367.5_1_18:21109371-21111665:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.3017578125	2	585.301113	1168.58767	0.52782	0.00030893	-0.10448	-6.115E-05	0.42334	0.00024778	585.3012990439089	50.241	1.1042	50.241	49.976	51.081	0					108	40	5	0	0	0	3.4202E-05	1	11660	11660		151.48	101.93	1	5166300			8179	4381	4455	4455	10770	10770					0.010122265006657472
EYIRSLNQF	9	Unmodified	_EYIRSLNQF_					0	0	0		ENST00000591367.5_1_18:21109371-21111665:+|nuORF;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENSG00000141452|ENST00000269221|RMC1	ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENST00000591367.5_1_18:21109371-21111665:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.3016357421875	2	585.301113	1168.58767	0.76682	0.00044882	-0.42555	-0.00024908	0.34127	0.00019974	585.3010738990982	50.212	1.0776	50.257	49.932	51.009	0.044891					96	39	4	0	0	0	6.549E-06	1	11635	11635		155.95	106.4	1	4870700			8180	4381	4455	4455	10771	10771					0.010122265006657472
EYIRSLNQF	9	Unmodified	_EYIRSLNQF_					0	0	0		ENST00000591367.5_1_18:21109371-21111665:+|nuORF;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENSG00000141452|ENST00000269221|RMC1	ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENST00000591367.5_1_18:21109371-21111665:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.3016357421875	2	585.301113	1168.58767	0.89706	0.00052505	-0.5129	-0.0003002	0.38415	0.00022485	585.3010143145955	50.244	1.1164	50.265	50.014	51.13	0.020691					102	41	4	0	0	0	6.5985E-11	1	11647	11647		181.69	123.97	1	4928300			8181	4381	4455	4455	10772	10772					0.010122265006657472
EYITAFQSI	9	Unmodified	_EYITAFQSI_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.271240234375	2	536.27149	1070.52843	0.50671	0.00027173	-2.3291	-0.001249	-1.8224	-0.00097729	536.2707256242151	70.509	0.7536	70.509	70.209	70.963	0					57	26	3	0	0	0	0.0091837	1	17888	17888		80.676	11.571	1	269800			8182	406	4456	4456	10773	10773					-0.0040166951350784075
EYITAFQSI	9	Unmodified	_EYITAFQSI_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.271240234375	2	536.27149	1070.52843	0.3805	0.00020405	-2.1252	-0.0011397	-1.7447	-0.00093566	536.2707270706187	70.455	0.77338	70.516	70.155	70.928	0.060783					46	27	3	0	0	0	0.0041491	1	17863	17863		93.166	30.593	1	352500			8183	406	4456	4456	10774	10774					-0.0040166951350784075
EYITAFQSI	9	Unmodified	_EYITAFQSI_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	536.27149	1070.52843	0.54725	0.00029347	-2.4623	-0.0013205	-1.9151	-0.001027	536.2708355594954	70.532	0.7256	70.507	70.245	70.971	-0.024864	-0.0032716	-0.00017529	NaN	93.166	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230590			8184	406	4456	4456							-0.0040166951350784075
EYITKLFNY	9	Unmodified	_EYITKLFNY_					0	0	0		ENSG00000065154|ENST00000368845|OAT;ENST00000476917.5_1_10:126095965-126100767:-|nuORF	ENSG00000065154|ENST00000368845|OAT	ENSG00000065154|ENST00000368845|OAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.2586669921875	2	595.808239	1189.60193	0.64042	0.00038157	-0.12172	-7.2521E-05	0.5187	0.00030905	596.310084453727	64.65	0.51364	64.65	64.37	64.884	0					29	17	2	0	0	0	0.13643	1	16084	16084		38.176	22.328	1	204630			8185	807	4457	4457	10775	10775					0.014708789289670676
EYITKLFNY	9	Unmodified	_EYITKLFNY_					0	0	0		ENSG00000065154|ENST00000368845|OAT;ENST00000476917.5_1_10:126095965-126100767:-|nuORF	ENSG00000065154|ENST00000368845|OAT	ENSG00000065154|ENST00000368845|OAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.2590942382812	2	595.808239	1189.60193	0.66839	0.00039823	0.008574	5.1084E-06	0.67696	0.00040334	595.8080489489823	64.578	0.37945	64.671	64.5	64.88	0.09288					29	13	3	0	0	0	0.18123	1	16044	16044		27.629	18.883	1	208520			8186	807	4457	4457	10776	10776					0.014708789289670676
EYITPMFSF	9	Oxidation (M)	_EYITPM(Oxidation (M))FSF_		EYITPM(1)FSF		EYITPM(190)FSF	0	0	1		ENSG00000012504|ENST00000392986|NR1H4;nc|ENSG00000012504|Q96RI1|NR1H4;nc|ENSG00000012504|Q96RI1-5|NR1H4;nc|ENSG00000012504|Q96RI1-2|NR1H4;nc|ENSG00000012504|Q96RI1-4|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7600708007812	2	575.759901	1149.50525	0.61222	0.00035249	-0.18605	-0.00010712	0.42616	0.00024537	575.7597028672313	78.362	1.3603	78.362	78.005	79.366	0					158	53	4	0	0	0	4.5012E-11	5	20267	20218;20267;20314;20364;20414		188.58	131.11	1	3498500			8187	452	4458	4458	10777;10778;10779;10780;10781	10778		49			-0.06352431622508448
EYITPMFSF	9	Oxidation (M)	_EYITPM(Oxidation (M))FSF_		EYITPM(1)FSF		EYITPM(190)FSF	0	0	1		ENSG00000012504|ENST00000392986|NR1H4;nc|ENSG00000012504|Q96RI1|NR1H4;nc|ENSG00000012504|Q96RI1-5|NR1H4;nc|ENSG00000012504|Q96RI1-2|NR1H4;nc|ENSG00000012504|Q96RI1-4|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7600708007812	2	575.759901	1149.50525	0.62537	0.00036006	-0.21312	-0.00012271	0.41224	0.00023735	575.7597108278733	78.278	1.3947	78.336	77.955	79.35	0.058151					155	56	4	0	0	0	4.5012E-11	4	20240	20189;20240;20291;20351		188.58	131.11	1	3708400			8188	452	4458	4458	10782;10783;10784;10785	10783		49			-0.06352431622508448
EYITPMFSF	9	Oxidation (M)	_EYITPM(Oxidation (M))FSF_		EYITPM(1)FSF		EYITPM(190)FSF	0	0	1		ENSG00000012504|ENST00000392986|NR1H4;nc|ENSG00000012504|Q96RI1|NR1H4;nc|ENSG00000012504|Q96RI1-5|NR1H4;nc|ENSG00000012504|Q96RI1-2|NR1H4;nc|ENSG00000012504|Q96RI1-4|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.760009765625	2	575.759901	1149.50525	0.7046	0.00040568	-0.29169	-0.00016795	0.41291	0.00023773	575.759643577525	78.327	1.5365	78.296	77.957	79.493	-0.030434					175	61	4	0	0	0	4.5012E-11	5	20260	20213;20260;20307;20405;20465		188.58	131.11	1	3692000			8189	452	4458	4458	10786;10787;10788;10789;10790	10787		49			-0.06352431622508448
EYKPPKFNLF	10	Unmodified	_EYKPPKFNLF_					0	0	0		ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8453369140625	2	641.845156	1281.67576	0.5031	0.00032291	0.10922	7.01E-05	0.61232	0.00039301	641.8454848438557	57.94	0.47099	58.026	57.865	58.336	0.085621					23	16	2	0	0	0	0.40106	1	14067	14067		3.2813	0	1	177720			8190	5602	4459	4459	10791	10791					0.04618847091251155
EYKPPKFNLF	10	Unmodified	_EYKPPKFNLF_					0	0	0		ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	641.845156	1281.67576	0.42478	0.00027264	-0.32133	-0.00020624	0.10345	6.6397E-05	642.3462010507326	58.207	0.53357	58.207	57.854	58.387	0	0.03857	-3.2538E-05	NaN	3.2813	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164820			8191	5602	4459	4459							0.04618847091251155
EYKPPKFNLF	10	Unmodified	_EYKPPKFNLF_					0	0	0		ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	641.845156	1281.67576	0.81544	0.00052338	-0.64287	-0.00041262	0.17257	0.00011076	641.8448299566447	58.29	0.54032	58.273	57.901	58.442	-0.0172	0.10423	-0.0004453	NaN	3.2813	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356450			8192	5602	4459	4459							0.04618847091251155
EYKRLIIRQ	9	Unmodified	_EYKRLIIRQ_					0	0	0			REV__ENSG00000196081|ENST00000418100|ZNF724	REV__ENSG00000196081|ENST00000418100|ZNF724	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5531005859375	3	406.915423	1217.72444	-0.11814	-4.8075E-05	1.5439	0.00062824	1.4258	0.00058017	407.25076774679314	16.885	0.34309	16.885	16.779	17.122	0					17	11	2	0	0	0	0.26245	1	1433	1433		0.96228	0	1	51561	+		8193	18611	4460	4460	10792	10792					0.1242876045103003
EYKSYKDDSK	10	Unmodified	_EYKSYKDDSK_					0	0	0		ENST00000534269.5_1_6:136590404-136595119:-|nuORF;ENST00000505813.1_1_5:110284092-110284650:-|nuORF;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	ENST00000534269.5_1_6:136590404-136595119:-|nuORF	ENST00000534269.5_1_6:136590404-136595119:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5350341796875	3	421.534825	1261.58265	-0.27734	-0.00011691	0.35371	0.0001491	0.076373	3.2194E-05	421.53508420333446	27.574	0.86212	27.574	27.146	28.008	0					83	29	4	0	0	0	0.33327	1	4678	4678		15.739	2.866	1	552250			8194	545	4461	4461	10793	10793					-0.037681221526327136
EYKSYKDDSK	10	Unmodified	_EYKSYKDDSK_					0	0	0		ENST00000534269.5_1_6:136590404-136595119:-|nuORF;ENST00000505813.1_1_5:110284092-110284650:-|nuORF;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	ENST00000534269.5_1_6:136590404-136595119:-|nuORF	ENST00000534269.5_1_6:136590404-136595119:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.53509521484375	3	421.534825	1261.58265	-0.27444	-0.00011569	0.55708	0.00023483	0.28264	0.00011914	421.5351086024169	27.556	0.9654	27.534	27.13	28.095	-0.02141					97	33	4	0	0	0	0.34155	2	4718	4669;4718		14.218	2.9536	1	710530			8195	545	4461	4461	10794;10795	10795					-0.037681221526327136
EYKSYKDDSK	10	Unmodified	_EYKSYKDDSK_					0	0	0		ENST00000534269.5_1_6:136590404-136595119:-|nuORF;ENST00000505813.1_1_5:110284092-110284650:-|nuORF;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	ENST00000534269.5_1_6:136590404-136595119:-|nuORF	ENST00000534269.5_1_6:136590404-136595119:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5349426269531	3	421.534825	1261.58265	-0.28962	-0.00012208	0.49491	0.00020862	0.20529	8.6538E-05	421.53507035487826	27.63	1.0693	27.619	27.16	28.23	-0.01156					73	37	3	0	0	0	0.35961	1	4729	4729		10.899	2.1472	1	651130			8196	545	4461	4461	10796	10796					-0.037681221526327136
EYKSYKDDSK	10	Unmodified	_EYKSYKDDSK_					0	0	0		ENST00000534269.5_1_6:136590404-136595119:-|nuORF;ENST00000505813.1_1_5:110284092-110284650:-|nuORF;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	ENST00000534269.5_1_6:136590404-136595119:-|nuORF	ENST00000534269.5_1_6:136590404-136595119:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	421.534825	1261.58265	-0.27444	-0.00011569	0.55708	0.00023483	0.28264	0.00011914	421.5351086024169	27.556	0.9654	27.534	27.13	28.095	-0.02141	-0.041434	0.00011346	NaN	15.739	97	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	710530			8197	545	4461	4461							-0.037681221526327136
EYKTVHEEL	9	Unmodified	_EYKTVHEEL_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2855834960938	2	574.285128	1146.5557	0.31332	0.00017994	0.35747	0.00020529	0.67079	0.00038523	574.2855437530959	26.795	0.30458	26.773	26.592	26.897	-0.021412					23	10	3	0	0	0	0.26612	1	4487	4487		13.906	6.6168	1	146830			8198	1324	4462	4462	10797	10797					-0.01171185973134925
EYKTVHEEL	9	Unmodified	_EYKTVHEEL_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.2854614257812	2	574.285128	1146.5557	0.36702	0.00021077	-0.089214	-5.1235E-05	0.2778	0.00015954	574.2849480597664	26.817	0.41883	26.805	26.595	27.014	-0.01156					22	14	2	0	0	0	0.088443	1	4474	4474		39.95	26.907	1	115330			8199	1324	4462	4462	10798	10798					-0.01171185973134925
EYLADLYHF	9	Unmodified	_EYLADLYHF_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.7767944335938	2	585.776939	1169.53933	0.22529	0.00013197	-0.37946	-0.00022228	-0.15418	-9.0314E-05	585.7765367132743	69.764	0.99937	69.764	69.485	70.484	0					93	36	4	0	0	0	2.4571E-07	1	17628	17628		170.55	124.53	1	1524200			8200	1530	4463	4463	10799	10799					-0.038662671392330594
EYLADLYHF	9	Unmodified	_EYLADLYHF_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.7770385742188	2	585.776939	1169.53933	0.14429	8.452E-05	-0.32749	-0.00019183	-0.1832	-0.00010731	585.7766889208233	69.75	1.1174	69.816	69.518	70.635	0.066048					93	39	4	0	0	0	2.4571E-07	1	17614	17614		170.55	124.53	1	1424400			8201	1530	4463	4463	10800	10800					-0.038662671392330594
EYLADLYHF	9	Unmodified	_EYLADLYHF_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.77685546875	2	585.776939	1169.53933	0.29894	0.00017511	-0.46552	-0.00027269	-0.16658	-9.7581E-05	585.7765142393172	69.803	1.1247	69.78	69.489	70.613	-0.022087					104	40	4	0	0	0	2.4571E-07	1	17629	17629		170.55	124.53	1	1982500			8202	1530	4463	4463	10801	10801					-0.038662671392330594
EYLAQLRPI	9	Unmodified	_EYLAQLRPI_					0	0	0			REV__nc|ENSG00000087299|Q9H9P8-2|L2HGDH	REV__nc|ENSG00000087299|Q9H9P8-2|L2HGDH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7655639648438	2	551.816399	1101.61824	0.36377	0.00020073	-1.0808	-0.00059638	-0.71699	-0.00039565	551.8157444428514	58.013	0.6633	58.013	57.552	58.216	0					40	23	2	0	0	0	0.17611	1	14067	14067		34.102	15.956	1	252920	+		8203	13993	4464	4464	10802	10802					0.07150004885693306
EYLAQLRPI	9	Unmodified	_EYLAQLRPI_					0	0	0			REV__nc|ENSG00000087299|Q9H9P8-2|L2HGDH	REV__nc|ENSG00000087299|Q9H9P8-2|L2HGDH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7828369140625	2	551.816399	1101.61824	0.43907	0.00024228	-1.4039	-0.00077472	-0.96488	-0.00053244	551.8155289931743	57.934	0.6196	58.019	57.518	58.138	0.085617					37	22	2	0	0	0	0.17611	1	14011	14011		34.102	13.649	1	255410	+		8204	13993	4464	4464	10803	10803					0.07150004885693306
EYLAQLRPI	9	Unmodified	_EYLAQLRPI_					0	0	0			REV__nc|ENSG00000087299|Q9H9P8-2|L2HGDH	REV__nc|ENSG00000087299|Q9H9P8-2|L2HGDH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.783447265625	2	551.816399	1101.61824	0.49846	0.00027506	-1.2217	-0.00067417	-0.72327	-0.00039911	551.8155145738236	58.14	0.72218	58.123	57.606	58.329	-0.0172					42	26	2	0	0	0	0.2451	1	14110	14110		15.847	1.0089	1	281610	+		8205	13993	4464	4464	10804	10804					0.07150004885693306
EYLEAHLKF	9	Unmodified	_EYLEAHLKF_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.7252197265625	2	575.300581	1148.58661	0.23205	0.0001335	-0.23508	-0.00013524	-0.0030312	-1.7438E-06	575.3005037010415	49.812	0.47809	49.812	49.572	50.05	0					34	17	3	0	0	0	0.08298	1	11525	11525		60.074	37.416	1	352950			8206	5566	4465	4465	10805	10805					0.018260121317553057
EYLEAHLKF	9	Unmodified	_EYLEAHLKF_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.7254028320312	2	575.300581	1148.58661	0.39346	0.00022636	-0.36516	-0.00021007	0.028301	1.6282E-05	575.3003015486387	49.781	0.64734	49.825	49.621	50.268	0.044891					42	24	3	0	0	0	0.13643	1	11480	11480		31.268	16.43	1	332730			8207	5566	4465	4465	10806	10806					0.018260121317553057
EYLEAHLKF	9	Unmodified	_EYLEAHLKF_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3003540039062	2	575.300581	1148.58661	0.28068	0.00016147	-0.50478	-0.0002904	-0.2241	-0.00012893	575.3005810718444	49.838	0.47857	49.858	49.617	50.095	0.020691					41	17	3	0	0	0	0.08298	1	11522	11522		60.074	30.992	1	309830			8208	5566	4465	4465	10807	10807					0.018260121317553057
EYLERAPEL	9	Unmodified	_EYLERAPEL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2879638671875	2	560.287671	1118.56079	0.55081	0.00030861	-0.57048	-0.00031963	-0.019667	-1.1019E-05	560.2875978275982	47.517	0.66086	47.517	47.137	47.797	0					43	23	3	0	0	0	0.00078391	1	10765	10765		125.53	81.671	1	1580600			8209	2548	4466	4466	10808	10808					0.0062511788946721936
EYLERAPEL	9	Unmodified	_EYLERAPEL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.7991943359375	2	560.287671	1118.56079	0.43436	0.00024337	-0.19912	-0.00011157	0.23524	0.0001318	560.2876819956223	47.432	0.6789	47.485	47.192	47.871	0.052574					53	24	4	0	0	0	0.00078391	2	10800	10737;10800		125.53	69.352	1	1701200			8210	2548	4466	4466	10809;10810	10810					0.0062511788946721936
EYLERAPEL	9	Unmodified	_EYLERAPEL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2877197265625	2	560.287671	1118.56079	0.75931	0.00042543	-0.63941	-0.00035825	0.1199	6.7179E-05	560.2875254775283	47.428	0.77545	47.471	46.995	47.771	0.043324					52	28	3	0	0	0	5.7257E-07	2	10739	10739;10793		157.8	97.721	1	2031400			8211	2548	4466	4466	10811;10812	10811					0.0062511788946721936
EYLERAPELF	10	Unmodified	_EYLERAPELF_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8218994140625	2	633.821878	1265.6292	0.24767	0.00015698	-1.2598	-0.00079849	-1.0121	-0.00064152	633.8217857655688	61.864	1.0374	61.864	61.413	62.45	0					92	38	4	0	0	0	3.3863E-05	2	15214	15214;15263		135.86	79.686	1	951450			8212	2548	4467	4467	10813;10814	10813					0.00701362469317246
EYLERAPELF	10	Unmodified	_EYLERAPELF_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.8218994140625	2	633.821878	1265.6292	0.019241	1.2195E-05	-1.5926	-0.0010094	-1.5734	-0.00099723	633.8219247936547	61.763	1.1424	61.86	61.429	62.572	0.096985					84	41	3	0	0	0	0.00069047	2	15176	15176;15233		124.95	77.204	1	860620			8213	2548	4467	4467	10815;10816	10815					0.00701362469317246
EYLERAPELF	10	Unmodified	_EYLERAPELF_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8220825195312	2	633.821878	1265.6292	0.21758	0.00013791	-1.6306	-0.0010335	-1.4131	-0.00089562	633.8217815287009	61.829	0.90126	61.82	61.451	62.353	-0.0085564					81	32	4	0	0	0	0.00069047	2	15201	15201;15249		124.95	77.204	1	1069100			8214	2548	4467	4467	10817;10818	10817					0.00701362469317246
EYLERVQAL	9	Unmodified	_EYLERVQAL_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2604370117188	2	560.803488	1119.59242	0.44579	0.00025	0.24679	0.0001384	0.69258	0.0003884	560.8038722970379	48.483	0.3357	48.483	48.358	48.694	0					28	11	3	0	0	0	0.059987	1	11137	11137		70.332	41.837	1	546860			8215	3557	4468	4468	10819	10819					0.03741110643431966
EYLERVQAL	9	Unmodified	_EYLERVQAL_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8040771484375	2	560.803488	1119.59242	0.67835	0.00038042	0.04296	2.4092E-05	0.72131	0.00040451	560.8036020555246	48.542	0.43603	48.589	48.39	48.826	0.047104					33	15	3	0	0	0	0.011693	1	11130	11130		76.825	29.23	1	604590			8216	3557	4468	4468	10820	10820					0.03741110643431966
EYLERVQAL	9	Unmodified	_EYLERVQAL_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2603149414062	2	560.803488	1119.59242	0.42266	0.00023703	0.72639	0.00040736	1.1491	0.0006444	560.804045280865	48.462	0.51942	48.505	48.32	48.839	0.04332					37	18	3	0	0	0	0.099099	1	11108	11108		55.503	20.571	1	560000			8217	3557	4468	4468	10821	10821					0.03741110643431966
EYLEYSLKL	9	Unmodified	_EYLEYSLKL_					0	0	0		nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3;ENST00000370482.6_1_1:89479706-89486410:-|nuORF	nc|ENSG00000117226|Q9H0R5-4|GBP3	nc|ENSG00000117226|Q9H0R5-4|GBP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.7969970703125	2	579.308072	1156.60159	0.45252	0.00026215	-0.056902	-3.2964E-05	0.39561	0.00022918	579.3080441686118	63.764	0.71631	63.86	63.621	64.337	0.095722					39	25	2	0	0	0	0.020233	1	15835	15835		63.961	36.332	1	1136800			8218	2783	4469	4469	10822	10822					0.02955459209078981
EYLFIEGNKI	10	Unmodified	_EYLFIEGNKI_					0	0	0		ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.3314819335938	2	613.326796	1224.63904	0.40679	0.0002495	0.54481	0.00033415	0.9516	0.00058364	613.3272720053625	87.99	0.47782	87.99	87.781	88.259	0					51	22	3	0	0	0	0.39935	1	23253	23253		3.5965	0	1	208070			8219	5050	4470	4470	10823	10823					0.03570550474728407
EYLFIEGNKI	10	Unmodified	_EYLFIEGNKI_					0	0	0		ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	613.326796	1224.63904	0.31228	0.00019153	0.68363	0.00041929	0.99591	0.00061082	613.3275918995606	87.844	0.49512	87.933	87.718	88.213	0.089203	-0.027427	9.5721E-05	NaN	3.5965	59	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268960			8220	5050	4470	4470							0.03570550474728407
EYLFIEGNKI	10	Unmodified	_EYLFIEGNKI_					0	0	0		ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	613.326796	1224.63904	0.33091	0.00020295	0.60451	0.00037076	0.93541	0.00057371	613.3273137957302	87.961	0.50754	87.958	87.736	88.243	-0.0028458	-0.0019241	-1.3319E-06	NaN	3.5965	60	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297720			8221	5050	4470	4470							0.03570550474728407
EYLGKFRRL	9	Unmodified	_EYLGKFRRL_					0	0	0		nc|ENSG00000155506|Q6PKG0-3|LARP1;LARP1|p.E945Pfs*8|1|0.42|ENSG00000155506|chr5:154811618-154811625|GTCTTGAA/-|frameshift_variant;ENSG00000155506|ENST00000518297|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	nc|ENSG00000155506|Q6PKG0-3|LARP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.306884765625	2	591.343115	1180.67168	-0.14666	-8.6726E-05	0.14871	8.7937E-05	0.0020482	1.2112E-06	591.3431552562554	34.287	0.41808	34.353	34.149	34.567	0.06636					25	14	2	0	0	0	0.24289	1	6733	6733		18.146	7.3224	1	108670			8222	5178	4471	4471	10824	10824					0.08856802388208962
EYLGKLVRF	9	Unmodified	_EYLGKLVRF_					0	0	0		ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF	ENSG00000134321|ENST00000382040|RSAD2	ENSG00000134321|ENST00000382040|RSAD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.84033203125	2	562.826766	1123.63898	0.38146	0.0002147	-0.028467	-1.6022E-05	0.35299	0.00019867	562.8268368718645	51.513	0.56068	51.513	51.198	51.759	0					38	20	3	0	0	0	0.14076	1	11986	11986		32.305	17.724	1	597490			8223	3774	4472	4472	10825	10825					0.08210595265359188
EYLGKLVRF	9	Unmodified	_EYLGKLVRF_					0	0	0		ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF	ENSG00000134321|ENST00000382040|RSAD2	ENSG00000134321|ENST00000382040|RSAD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8402709960938	2	562.826766	1123.63898	0.35425	0.00019938	0.11976	6.7405E-05	0.47401	0.00026679	562.8268587528363	51.444	0.42827	51.49	51.296	51.725	0.046577					36	15	3	0	0	0	0.12846	1	11986	11986		34.102	19.264	1	740070			8224	3774	4472	4472	10826	10826					0.08210595265359188
EYLGKLVRF	9	Unmodified	_EYLGKLVRF_					0	0	0		ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF	ENSG00000134321|ENST00000382040|RSAD2	ENSG00000134321|ENST00000382040|RSAD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	562.826766	1123.63898	0.23568	0.00013265	0.43558	0.00024515	0.67126	0.0003778	562.8270748488658	51.582	0.72696	51.591	51.373	52.1	0.0095634	0.059989	0.00034218	NaN	34.102	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	890390			8225	3774	4472	4472							0.08210595265359188
EYLGSMAKI	9	Oxidation (M)	_EYLGSM(Oxidation (M))AKI_		EYLGSM(1)AKI		EYLGSM(89)AKI	0	0	1		nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;nc|ENSG00000182473|Q9UPT5-4|EXOC7;ENST00000405068.3_1_17:74090453-74099797:-|nuORF	nc|ENSG00000182473|Q9UPT5-2|EXOC7	nc|ENSG00000182473|Q9UPT5-2|EXOC7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2601318359375	2	514.260068	1026.50558	0.6635	0.00034121	-0.17302	-8.8975E-05	0.49048	0.00025223	514.2597816731449	37.556	0.99402	37.556	37.124	38.118	0					74	35	3	0	0	0	0.0046246	2	7772	7723;7772		89.401	21.32	1	1512300			8226	7293	4473	4473	10827;10828	10828		812			-0.006610119026390748
EYLGSMAKI	9	Oxidation (M)	_EYLGSM(Oxidation (M))AKI_		EYLGSM(1)AKI		EYLGSM(100)AKI	0	0	1		nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;nc|ENSG00000182473|Q9UPT5-4|EXOC7;ENST00000405068.3_1_17:74090453-74099797:-|nuORF	nc|ENSG00000182473|Q9UPT5-2|EXOC7	nc|ENSG00000182473|Q9UPT5-2|EXOC7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.26025390625	2	514.260068	1026.50558	0.30726	0.00015801	0.17315	8.9042E-05	0.4804	0.00024705	514.2599515344299	37.507	0.958	37.594	37.247	38.205	0.08741					74	34	4	0	0	0	0.003317	2	7750	7696;7750		99.755	31.675	1	1582500			8227	7293	4473	4473	10829;10830	10830		812			-0.006610119026390748
EYLGSMAKI	9	Oxidation (M)	_EYLGSM(Oxidation (M))AKI_		EYLGSM(1)AKI		EYLGSM(89)AKI	0	0	1		nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;nc|ENSG00000182473|Q9UPT5-4|EXOC7;ENST00000405068.3_1_17:74090453-74099797:-|nuORF	nc|ENSG00000182473|Q9UPT5-2|EXOC7	nc|ENSG00000182473|Q9UPT5-2|EXOC7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2603149414062	2	514.260068	1026.50558	0.23963	0.00012323	0.302	0.00015531	0.54164	0.00027854	514.2600444375091	37.435	1.2732	37.528	36.924	38.198	0.093014					88	46	3	0	0	0	0.0046246	2	7727	7681;7727		89.401	21.32	1	1726100			8228	7293	4473	4473	10831;10832	10832		812			-0.006610119026390748
EYLGWLEGWF	10	Unmodified	_EYLGWLEGWF_					0	0	0		ENST00000556123.1_1_14:69968394-69968652:+|nuORF	ENST00000556123.1_1_14:69968394-69968652:+|nuORF	ENST00000556123.1_1_14:69968394-69968652:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.8728332519531	3	433.873001	1298.59717	0.0092062	3.9943E-06	-0.3957	-0.00017168	-0.3865	-0.00016769	433.87285460599185	36.144	1.2369	36.144	35.693	36.93	0					146	44	5	0	0	0	0.38522	3	7335	7235;7335;7383		6.1918	1.7857	1	3265200			8229	11852	4474	4474	10833;10834;10835	10834					-0.04018005213811193
EYLHRGSIF	9	Unmodified	_EYLHRGSIF_					0	0	0			REV__nc|ENSG00000129204|P35125-2|USP6;REV__ENSG00000170832|ENST00000300896|USP32	REV__nc|ENSG00000129204|P35125-2|USP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7978515625	2	561.290548	1120.56654	0.11506	6.4581E-05	2.8647	0.0016079	2.9797	0.0016725	561.7948369586104	67.359	0.94233	67.343	66.814	67.757	-0.016296					63	32	3	0	0	0	0.24913	1	16828	16828		12.532	2.3482	1	181730	+		8230	15403;17598	4475	4475	10836	10836					0.011082611918027396
EYLHRGSIF	9	Unmodified	_EYLHRGSIF_					0	0	0			REV__nc|ENSG00000129204|P35125-2|USP6;REV__ENSG00000170832|ENST00000300896|USP32	REV__nc|ENSG00000129204|P35125-2|USP6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.290548	1120.56654	0.33169	0.00018618	2.9972	0.0016823	3.3289	0.0018685	561.7948785376761	67.112	1.0404	67.19	66.761	67.802	0.078041	-0.076295	6.4449E-05	NaN	12.532	68	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146340	+		8231	15403;17598	4475	4475							0.011082611918027396
EYLIEADTDCS	11	Unmodified	_EYLIEADTDCS_					0	0	0			REV__nc|ENSG00000144481|Q7Z2W7-3|TRPM8	REV__nc|ENSG00000144481|Q7Z2W7-3|TRPM8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.8088989257812	2	629.760826	1257.5071	0.49048	0.00030888	0.2141	0.00013483	0.70457	0.00044371	629.7611036733523	60.816	0.46001	60.913	60.579	61.039	0.096985					27	15	3	0	0	0	0.32667	1	14853	14853		13.042	2.9685	1	501590	+		8232	16238	4476	4476	10837	10837					-0.11135467395206433
EYLIVFPKL	9	Unmodified	_EYLIVFPKL_					0	0	0		ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.3343505859375	2	561.333893	1120.65323	0.72754	0.00040839	0.31028	0.00017417	1.0378	0.00058256	561.3338893513546	78.038	1.5215	78.038	77.228	78.749	0					95	56	2	0	0	0	0.00070271	3	20123	20123;20167;20210		126.57	126.57	1	5061700			8233	8033	4477	4477	10838;10839;10840	10838					0.09773247693647136
EYLIVFPKL	9	Unmodified	_EYLIVFPKL_					0	0	0		ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3342895507812	2	561.333893	1120.65323	0.68868	0.00038658	0.30112	0.00016903	0.9898	0.00055561	561.3338865429913	77.969	1.5786	78.027	77.236	78.814	0.058151					97	57	2	0	0	0	0.00011048	3	20139	20091;20139;20187		139.14	139.14	1	5884600			8234	8033	4477	4477	10841;10842;10843	10842					0.09773247693647136
EYLIVFPKL	9	Unmodified	_EYLIVFPKL_					0	0	0		ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.33447265625	2	561.333893	1120.65323	0.79225	0.00044472	0.026028	1.461E-05	0.81828	0.00045933	561.3338837516661	78.062	1.1648	78.032	77.679	78.844	-0.030426					82	43	2	0	0	0	6.1526E-05	3	20152	20111;20152;20197		147.06	126.57	1	5970500			8235	8033	4477	4477	10844;10845;10846	10845					0.09773247693647136
EYLKCRKLF	9	Unmodified	_EYLKCRKLF_					0	0	0		nc|ENSG00000120500|P36575-2|ARR3;ENSG00000120500|ENST00000307959|ARR3	nc|ENSG00000120500|P36575-2|ARR3	nc|ENSG00000120500|P36575-2|ARR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3349609375	2	600.333901	1198.65325	0.44733	0.00026855	0.58998	0.00035419	1.0373	0.00062273	600.3342186629694	82.167	1.7056	82.236	81.53	83.235	0.068985					121	70	2	0	0	0	0.33508	1	21730	21730		3.5965	0.60125	1	335590			8236	2947	4478	4478	10847	10847					0.06186924421990625
EYLKFGVYTGP	11	Unmodified	_EYLKFGVYTGP_					0	0	0			REV__nc|ENSG00000274349|Q5TYW1-2|ZNF658	REV__nc|ENSG00000274349|Q5TYW1-2|ZNF658	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.32666015625	2	637.326796	1272.63904	0.58099	0.00037028	-0.030562	-1.9478E-05	0.55043	0.0003508	637.3265980944757	84.345	0.47653	84.345	84.186	84.663	0					43	17	3	0	0	0	0.46475	1	22172	22172		2.7352	0.89096	1	396480	+		8237	19325	4479	4479	10848	10848					0.013625504747096784
EYLKHHNRI	9	Unmodified	_EYLKHHNRI_					0	0	0		nc|ENSG00000125812|Q9H116-4|GZF1;ENSG00000125812|ENST00000338121|GZF1	nc|ENSG00000125812|Q9H116-4|GZF1	nc|ENSG00000125812|Q9H116-4|GZF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.8878173828125	3	403.887756	1208.64144	-0.24739	-9.9918E-05	0.46049	0.00018599	0.2131	8.6069E-05	403.88797926845217	16.119	0.71388	16.119	15.892	16.606	0					73	24	4	0	0	0	0.26807	1	1270	1270		13.615	13.615	1	277600			8238	3231	4480	4480	10849	10849					0.04546443723052107
EYLKHHNRI	9	Unmodified	_EYLKHHNRI_					0	0	0		nc|ENSG00000125812|Q9H116-4|GZF1;ENSG00000125812|ENST00000338121|GZF1	nc|ENSG00000125812|Q9H116-4|GZF1	nc|ENSG00000125812|Q9H116-4|GZF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.8879089355469	3	403.887756	1208.64144	-0.37184	-0.00015018	0.61154	0.00024699	0.2397	9.6812E-05	403.8880231395908	16.317	0.63581	16.202	15.95	16.586	-0.11434					65	21	4	0	0	0	0.26807	1	1305	1305		13.615	13.615	1	281470			8239	3231	4480	4480	10850	10850					0.04546443723052107
EYLKHHNRI	9	Unmodified	_EYLKHHNRI_					0	0	0		nc|ENSG00000125812|Q9H116-4|GZF1;ENSG00000125812|ENST00000338121|GZF1	nc|ENSG00000125812|Q9H116-4|GZF1	nc|ENSG00000125812|Q9H116-4|GZF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.8879089355469	3	403.887756	1208.64144	-0.22949	-9.2688E-05	0.45608	0.0001842	0.22659	9.1516E-05	403.88801792910306	16.217	0.64081	16.154	15.917	16.558	-0.062532					64	21	4	0	0	0	0.2953	1	1283	1283		9.544	9.544	1	259320			8240	3231	4480	4480	10851	10851					0.04546443723052107
EYLKLLHSF	9	Unmodified	_EYLKLLHSF_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.318603515625	2	575.318774	1148.623	0.33103	0.00019045	-0.3455	-0.00019877	-0.014469	-8.3242E-06	575.3185305462233	56.927	0.91497	56.927	56.61	57.525	0					95	33	4	0	0	0	6.5985E-11	1	13697	13697		181.69	131.76	1	2104500			8241	8157	4481	4481	10852	10852					0.054628890284675435
EYLKLLHSF	9	Unmodified	_EYLKLLHSF_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3185424804688	2	575.318774	1148.623	0.44747	0.00025744	-0.56568	-0.00032545	-0.11821	-6.8007E-05	575.3184616562968	56.763	0.8274	56.842	56.603	57.43	0.078674					95	30	5	0	0	0	2.1945E-07	1	13644	13644		181.69	131.76	1	2483500			8242	8157	4481	4481	10853	10853					0.054628890284675435
EYLKLLHSF	9	Unmodified	_EYLKLLHSF_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3186645507812	2	575.318774	1148.623	0.26844	0.00015444	-0.11395	-6.5559E-05	0.15449	8.8882E-05	575.3186519533239	57.087	0.79848	57.068	56.754	57.553	-0.019077					85	28	4	0	0	0	2.973E-07	2	13744	13744;13797		168.54	121.86	1	2683400			8243	8157	4481	4481	10854;10855	10854					0.054628890284675435
EYLKLLHSF	9	Unmodified	_EYLKLLHSF_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.7850341796875	2	575.318774	1148.623	0.12817	7.3736E-05	1.485	0.00085434	1.6131	0.00092807	575.3193433083186	57.692	0.26624	57.675	57.582	57.848	-0.0172					11	9	2	0	0	0	0.23784	1	13935	13935		19.257	5.3509	1	198820			8244	8157	4481	4481	10856	10856					0.054628890284675435
EYLKNVLLQF	10	Unmodified	_EYLKNVLLQF_					0	0	0		ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENST00000477523.1_1_2:110602660-110613470:+|nuORF;ENST00000480863.1_1_2:109113406-109124083:+|nuORF;ENSG00000135968|ENST00000309863|GCC2	ENSG00000183054|ENST00000329516|RGPD6;ENSG00000135968|ENST00000309863|GCC2	ENSG00000183054|ENST00000329516|RGPD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3601684570312	2	633.858264	1265.70197	0.078407	4.9699E-05	0.17287	0.00010957	0.25127	0.00015927	633.8583284742814	73.673	0.45108	73.673	73.441	73.893	0					40	15	3	0	0	0	0.015324	1	18848	18848		76.825	46.984	1	393370			8245	484;3929	4482	4482	10857	10857					0.07975116262764459
EYLKNVLLQF	10	Unmodified	_EYLKNVLLQF_					0	0	0		ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENST00000477523.1_1_2:110602660-110613470:+|nuORF;ENST00000480863.1_1_2:109113406-109124083:+|nuORF;ENSG00000135968|ENST00000309863|GCC2	ENSG00000183054|ENST00000329516|RGPD6;ENSG00000135968|ENST00000309863|GCC2	ENSG00000183054|ENST00000329516|RGPD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.8587646484375	2	633.858264	1265.70197	0.31129	0.00019731	0.16815	0.00010658	0.47943	0.00030389	633.8582096588339	73.692	0.56149	73.744	73.445	74.007	0.052361					37	19	3	0	0	0	0.0017661	2	18815	18815;18864		110.55	66.78	1	528190			8246	484;3929	4482	4482	10858;10859	10858					0.07975116262764459
EYLKNVLLQF	10	Unmodified	_EYLKNVLLQF_					0	0	0		ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENST00000477523.1_1_2:110602660-110613470:+|nuORF;ENST00000480863.1_1_2:109113406-109124083:+|nuORF;ENSG00000135968|ENST00000309863|GCC2	ENSG00000183054|ENST00000329516|RGPD6;ENSG00000135968|ENST00000309863|GCC2	ENSG00000183054|ENST00000329516|RGPD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8585205078125	2	633.858264	1265.70197	0.40816	0.00025871	-0.10155	-6.4369E-05	0.30661	0.00019434	633.8581649910224	73.769	0.46536	73.739	73.502	73.967	-0.030655					42	16	3	0	0	0	0.0035533	1	18857	18857		100.09	63.585	1	587500			8247	484;3929	4482	4482	10860	10860					0.07975116262764459
EYLKVDAQF	9	Unmodified	_EYLKVDAQF_					0	0	0		ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1;ENST00000466052.1_1_1:33256818-33263474:-|nuORF;ENST00000470377.1_1_1:33256708-33272178:-|nuORF	ENST00000481895.5_1_1:33256818-33282875:-|nuORF	ENST00000481895.5_1_1:33256818-33282875:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7847290039062	2	556.784764	1111.55498	0.34139	0.00019008	-0.62301	-0.00034688	-0.28162	-0.0001568	556.7843034858361	53.425	1.0079	53.415	53.056	54.064	-0.0096054					92	37	3	0	0	0	2.0102E-16	3	12581	12581;12627;12675		203.64	143.56	1	5628100			8248	3800	4483	4483	10861;10862;10863	10861					0.0036601937779323634
EYLKVDAQF	9	Unmodified	_EYLKVDAQF_					0	0	0		ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1;ENST00000466052.1_1_1:33256818-33263474:-|nuORF;ENST00000470377.1_1_1:33256708-33272178:-|nuORF	ENST00000481895.5_1_1:33256818-33282875:-|nuORF	ENST00000481895.5_1_1:33256818-33282875:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	556.784764	1111.55498	0.42117	0.0002345	-0.88123	-0.00049066	-0.46006	-0.00025615	556.7842479343137	53.274	1.471	53.274	52.797	54.268	0	-0.060196	-0.00017413	NaN	203.64	84	54	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6924500			8249	3800	4483	4483							0.0036601937779323634
EYLKVDAQF	9	Unmodified	_EYLKVDAQF_					0	0	0		ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1;ENST00000466052.1_1_1:33256818-33263474:-|nuORF;ENST00000470377.1_1_1:33256708-33272178:-|nuORF	ENST00000481895.5_1_1:33256818-33282875:-|nuORF	ENST00000481895.5_1_1:33256818-33282875:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	556.784764	1111.55498	0.43228	0.00024069	-0.70258	-0.00039119	-0.2703	-0.0001505	556.7842640705194	53.258	1.1477	53.314	53.013	54.161	0.056259	-0.020402	2.4805E-05	NaN	203.64	114	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6964400			8250	3800	4483	4483							0.0036601937779323634
EYLLKAYVL	9	Unmodified	_EYLLKAYVL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3235473632812	2	556.323525	1110.6325	0.48495	0.00026979	-0.20573	-0.00011445	0.27922	0.00015534	556.3232331884033	66.304	0.50501	66.304	66.068	66.573	0					47	17	3	0	0	0	0.0016361	1	16606	16606		114.65	55.97	1	1879900			8251	2724	4484	4484	10864	10864					0.0816065731398794
EYLLKAYVL	9	Unmodified	_EYLLKAYVL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3236694335938	2	556.323525	1110.6325	0.4752	0.00026437	-0.24219	-0.00013474	0.23301	0.00012963	556.3232780924328	66.208	0.54839	66.291	65.996	66.544	0.083832					56	19	4	0	0	0	0.0016361	3	16552	16552;16597;16603		114.65	55.97	1	1944900			8252	2724	4484	4484	10865;10866;10867	10865					0.0816065731398794
EYLLKAYVL	9	Unmodified	_EYLLKAYVL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3236694335938	2	556.323525	1110.6325	0.26198	0.00014575	-0.0079335	-4.4136E-06	0.25405	0.00014133	556.3234029188993	66.352	0.53951	66.339	66.032	66.572	-0.013588					58	19	4	0	0	0	0.0016361	2	16611	16611;16643		114.65	55.97	1	1801900			8253	2724	4484	4484	10868;10869	10868					0.0816065731398794
EYLLKVNEI	9	Unmodified	_EYLLKVNEI_					0	0	0		nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8162231445312	2	560.816064	1119.61758	0.30926	0.00017344	0.61735	0.00034622	0.92661	0.00051966	560.8159734901576	57.635	1.8075	57.635	57.299	59.107	0					179	63	5	0	0	0	5.4465E-12	6	13936	13879;13886;13936;13986;14038;14094		201.57	0	1	12550000			8254	4977	4485	4485	10870;10871;10872;10873;10874;10875	10872					0.06255165445986677
EYLLKVNEI	9	Unmodified	_EYLLKVNEI_					0	0	0		nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8161010742188	2	560.816064	1119.61758	0.37761	0.00021177	0.57333	0.00032153	0.95094	0.0005333	560.815967909478	57.47	1.9096	57.555	57.21	59.12	0.085617					184	68	4	0	0	0	2.0102E-16	3	13930	13886;13930;13981		203.64	0	1	12722000			8255	4977	4485	4485	10876;10877;10878	10877					0.06255165445986677
EYLLKVNEI	9	Unmodified	_EYLLKVNEI_					0	0	0		nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8160400390625	2	560.816064	1119.61758	0.19662	0.00011027	0.72603	0.00040717	0.92265	0.00051744	560.8160767643598	57.704	1.5434	57.686	57.285	58.829	-0.017197					182	56	5	0	0	0	7.3424E-17	5	14002	13888;13904;13952;14002;14052		218.2	0	1	12849000			8256	4977	4485	4485	10879;10880;10881;10882;10883	10882					0.06255165445986677
EYLNQLNLL	9	Unmodified	_EYLNQLNLL_					0	0	0			REV__RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	REV__RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.7744140625	2	560.305864	1118.59717	0.26694	0.00014957	0.45716	0.00025615	0.7241	0.00040572	560.306095220899	81.501	2.0038	81.476	81.045	83.049	-0.02404					166	82	4	0	0	0	0.13643	1	21150	21150		45.7	1.7178	1	4017400	+		8257	17806	4486	4486	10884	10884					0.04261994786179457
EYLPIGGLAEF	11	Unmodified	_EYLPIGGLAEF_					0	0	0		ENSG00000125166|ENST00000245206|GOT2;ENST00000568368.1_1_16:58756047-58768190:-|nuORF;ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF	ENSG00000125166|ENST00000245206|GOT2	ENSG00000125166|ENST00000245206|GOT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.81396484375	2	604.813522	1207.61249	0.639	0.00038647	0.26619	0.000161	0.90519	0.00054747	604.813591476406	87.962	1.1538	87.962	87.643	88.797	0					157	57	4	0	0	0	4.7133E-19	7	23198	23149;23158;23198;23239;23284;23331;23379		201.57	149.94	1	2702200			8258	3193	4487	4487	10885;10886;10887;10888;10889;10890;10891	10887					0.016988615833724907
EYLPIGGLAEF	11	Unmodified	_EYLPIGGLAEF_					0	0	0		ENSG00000125166|ENST00000245206|GOT2;ENST00000568368.1_1_16:58756047-58768190:-|nuORF;ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF	ENSG00000125166|ENST00000245206|GOT2	ENSG00000125166|ENST00000245206|GOT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.8140869140625	2	604.813522	1207.61249	0.58308	0.00035265	0.30479	0.00018434	0.88787	0.00053699	604.8136195783567	87.86	1.122	87.949	87.602	88.724	0.089195					171	56	4	0	0	0	4.2329E-18	6	23162	23123;23162;23203;23248;23292;23347		187.3	135.67	1	2611100			8259	3193	4487	4487	10892;10893;10894;10895;10896;10897	10893					0.016988615833724907
EYLPSGCLRDF	11	Unmodified	_EYLPSGCLRDF_					0	0	0		nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3	nc|ENSG00000105639|P52333-2|JAK3	nc|ENSG00000105639|P52333-2|JAK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.8729553222656	3	433.872784	1298.59652	0.11346	4.9227E-05	0.031874	1.3829E-05	0.14533	6.3056E-05	433.872813579728	36.052	1.4331	36.134	35.624	37.057	0.082355					143	51	5	0	0	0	0.46554	1	7243	7243		2.6312	0.19645	1	3096200			8260	1999	4488	4488	10898	10898					-0.04083167925205089
EYLQEVARI	9	Unmodified	_EYLQEVARI_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8046264648438	2	560.803488	1119.59242	0.64389	0.0003611	1.0119	0.0005675	1.6558	0.0009286	560.8042765077834	52.946	0.4501	53.002	52.717	53.167	0.056255					26	15	2	0	0	0	0.0073901	1	12479	12479		83.429	20.856	1	567800			8261	6752	4489	4489	10899	10899					0.03741110643431966
EYLQEVARI	9	Unmodified	_EYLQEVARI_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.803488	1119.59242	0.36664	0.00020561	1.2773	0.00071632	1.644	0.00092193	560.8043261227649	53.028	0.46199	53.028	52.686	53.148	0	-0.032418	7.8004E-05	NaN	83.429	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	635280			8262	6752	4489	4489							0.03741110643431966
EYLQEVARI	9	Unmodified	_EYLQEVARI_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	560.803488	1119.59242	0.31877	0.00017877	1.1782	0.00066072	1.4969	0.00083949	560.8043103447176	53.161	0.44167	53.152	52.863	53.305	-0.0096054	0.091052	-3.3198E-05	NaN	83.429	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608360			8263	6752	4489	4489							0.03741110643431966
EYLRFLQTI	9	Unmodified	_EYLRFLQTI_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8296508789062	2	591.829506	1181.64446	0.41409	0.00024507	1.2072	0.00071446	1.6213	0.00095953	591.8294456844856	70.184	1.5355	70.184	69.428	70.963	0					91	55	2	0	0	0	0.018042	1	17760	17760		67.081	34.295	1	558890			8264	3087	4490	4490	10900	10900					0.06090274057191891
EYLRFLQTI	9	Unmodified	_EYLRFLQTI_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8297729492188	2	591.829506	1181.64446	0.3864	0.00022868	1.267	0.00074986	1.6534	0.00097854	591.8296025277235	70.147	1.7902	70.213	69.284	71.074	0.066048					98	63	2	0	0	0	0.0040516	1	17751	17751		93.938	53.981	1	596560			8265	3087	4490	4490	10901	10901					0.06090274057191891
EYLRFLQTI	9	Unmodified	_EYLRFLQTI_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.8298950195312	2	591.829506	1181.64446	0.42008	0.00024861	1.1801	0.0006984	1.6002	0.00094702	591.8295699055542	70.257	1.436	70.235	69.591	71.027	-0.022087					95	51	2	0	0	0	0.0028032	1	17790	17790		103.82	63.874	1	620500			8266	3087	4490	4490	10902	10902					0.06090274057191891
EYLRQIFRL	9	Unmodified	_EYLRQIFRL_					0	0	0		nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2398681640625	3	413.239907	1236.69789	-0.19918	-8.2311E-05	0.053269	2.2013E-05	-0.14592	-6.0298E-05	413.239898585194	59.546	0.63059	59.546	59.267	59.897	0					62	21	4	0	0	0	0.15763	2	14538	14487;14538		29.841	20.864	1	1386800			8267	12719	4491	4491	10903;10904	10904					0.08901071559716911
EYLRQIFRL	9	Unmodified	_EYLRQIFRL_					0	0	0		nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.356201171875	2	619.356222	1236.69789	0.09056	5.6089E-05	-0.12329	-7.6358E-05	-0.032725	-2.0269E-05	619.3560892901093	59.568	0.54718	59.568	59.297	59.844	0					39	18	3	0	0	0	0.0047555	1	14510	14510		106.94	39.102	1	492480			8268	12719	4491	4491	10905	10905					0.08901071559716911
EYLRQIFRL	9	Unmodified	_EYLRQIFRL_					0	0	0		nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2397766113281	3	413.239907	1236.69789	0.19767	8.1684E-05	-0.3854	-0.00015926	-0.18773	-7.7579E-05	413.239684864695	59.368	0.66895	59.46	59.126	59.795	0.091305					61	23	4	0	0	0	0.15763	3	14452	14406;14452;14500		29.841	18.346	1	1370900			8269	12719	4491	4491	10906;10907;10908	10907					0.08901071559716911
EYLRQIFRL	9	Unmodified	_EYLRQIFRL_					0	0	0		nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.3562622070312	2	619.356222	1236.69789	0.064348	3.9854E-05	0.028378	1.7576E-05	0.092726	5.743E-05	619.3561511251905	59.328	0.49908	59.42	59.211	59.71	0.091301					37	17	3	0	0	0	0.016571	1	14448	14448		75.761	20.258	1	526720			8270	12719	4491	4491	10909	10909					0.08901071559716911
EYLRQIFRL	9	Unmodified	_EYLRQIFRL_					0	0	0		nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.356201171875	2	619.356222	1236.69789	0.35596	0.00022046	-0.27557	-0.00017067	0.080391	4.9791E-05	619.3559134972173	59.52	0.45142	59.508	59.312	59.763	-0.011486					36	15	3	0	0	0	0.0016481	1	14496	14496		137.42	51.092	1	659840			8271	12719	4491	4491	10910	10910					0.08901071559716911
EYLSLVARL	9	Unmodified	_EYLSLVARL_					0	0	0		nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15	nc|ENSG00000099917|Q96RN5-3|MED15	nc|ENSG00000099917|Q96RN5-3|MED15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3123168945312	2	532.310949	1062.60735	0.69534	0.00037014	-1.519	-0.00080858	-0.82367	-0.00043845	532.8109311675807	66.15	1.2255	66.15	65.768	66.994	0					96	43	3	0	0	0	0.0019475	2	16585	16585;16643		110.67	35.746	1	1876400			8272	1505	4492	4492	10911;10912	10911					0.07854602511406483
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.81591796875	2	554.816064	1107.61758	0.38418	0.00021315	-0.46097	-0.00025575	-0.076783	-4.26E-05	554.8158049945858	37.742	1.4443	37.833	37.527	38.972	0.090881					158	52	5	0	0	0	3.361E-11	5	7773	7745;7773;7820;7871;7934		192.32	109.79	1	10383000			8273	4369	4493	4493	10913;10914;10915;10916;10917	10914					0.06807165446002728
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.81591796875	2	554.816064	1107.61758	0.24762	0.00013738	-0.25432	-0.0001411	-0.0067058	-3.7205E-06	554.8159121087195	37.681	1.6215	37.779	37.477	39.098	0.097527					169	58	5	0	0	0	2.1937E-08	4	7769	7724;7769;7818;7916		179.28	96.754	1	10432000			8274	4369	4493	4493	10918;10919;10920;10921	10919					0.06807165446002728
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	554.816064	1107.61758	0.47804	0.00026523	-0.53697	-0.00029792	-0.058928	-3.2694E-05	554.8157707335192	37.818	1.5075	37.818	37.532	39.04	0	0.0079698	-0.00011052	NaN	192.32	160	53	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10022000			8275	4369	4493	4493							0.06807165446002728
EYLTRKGVF	9	Unmodified	_EYLTRKGVF_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2579956054688	2	556.808574	1111.60259	0.37654	0.00020966	-0.011097	-6.1792E-06	0.36544	0.00020348	556.8082698576818	58.219	0.63692	58.219	57.927	58.564	0					38	21	2	0	0	0	0.18943	1	14146	14146		30.225	5.5509	1	419080			8276	1324	4494	4494	10922	10922					0.051257183686630015
EYLTRKGVF	9	Unmodified	_EYLTRKGVF_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2581787109375	2	556.808574	1111.60259	0.35486	0.00019759	-0.32225	-0.00017943	0.03261	1.8158E-05	556.8082746952496	58.102	0.62825	58.187	57.84	58.468	0.085621					31	18	2	0	0	0	0.21905	1	14099	14099		23.148	5.0134	1	448740			8277	1324	4494	4494	10923	10923					0.051257183686630015
EYLTSPQEF	9	Unmodified	_EYLTSPQEF_					0	0	0		nc|ENSG00000138756|Q9NSY1-2|BMP2K;nc|ENSG00000138756|Q9NSY1-3|BMP2K;ENSG00000138756|ENST00000502613|BMP2K	nc|ENSG00000138756|Q9NSY1-2|BMP2K	nc|ENSG00000138756|Q9NSY1-2|BMP2K	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2581787109375	2	557.258579	1112.50261	0.41144	0.00022928	-0.63372	-0.00035315	-0.22228	-0.00012387	557.2579596181497	58.375	0.84137	58.375	58.1	58.941	0					65	28	3	0	0	0	0.0073901	1	14193	14193		83.429	33.496	1	765800			8278	4186	4495	4495	10924	10924					-0.04914563755801282
EYLTSPQEF	9	Unmodified	_EYLTSPQEF_					0	0	0		nc|ENSG00000138756|Q9NSY1-2|BMP2K;nc|ENSG00000138756|Q9NSY1-3|BMP2K;ENSG00000138756|ENST00000502613|BMP2K	nc|ENSG00000138756|Q9NSY1-2|BMP2K	nc|ENSG00000138756|Q9NSY1-2|BMP2K	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2584228515625	2	557.258579	1112.50261	0.36497	0.00020338	-0.61252	-0.00034133	-0.24754	-0.00013795	557.2580554813808	58.216	1.0576	58.301	57.92	58.977	0.085617					76	37	3	0	0	0	0.0046246	1	14149	14149		89.401	30.722	1	947640			8279	4186	4495	4495	10925	10925					-0.04914563755801282
EYLTSPQEF	9	Unmodified	_EYLTSPQEF_					0	0	0		nc|ENSG00000138756|Q9NSY1-2|BMP2K;nc|ENSG00000138756|Q9NSY1-3|BMP2K;ENSG00000138756|ENST00000502613|BMP2K	nc|ENSG00000138756|Q9NSY1-2|BMP2K	nc|ENSG00000138756|Q9NSY1-2|BMP2K	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.25830078125	2	557.258579	1112.50261	0.62535	0.00034848	-0.68351	-0.00038089	-0.058154	-3.2407E-05	557.2579030621343	58.481	0.97065	58.467	58.114	59.084	-0.014267					67	34	3	0	0	0	0.0016712	2	14202	14154;14202		114.2	54.128	1	1005300			8280	4186	4495	4495	10926;10927	10927					-0.04914563755801282
EYLTYSLKL	9	Unmodified	_EYLTYSLKL_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.7586669921875	2	565.310615	1128.60668	0.39256	0.00022192	-0.25668	-0.0001451	0.13588	7.6817E-05	565.3102761937093	63.67	0.87318	63.67	63.364	64.238	0					91	31	4	0	0	0	0.18479	1	15837	15837		34.932	9.5328	1	2239600			8281	2784	4496	4496	10928	10928					0.04751763071703863
EYLTYSLKL	9	Unmodified	_EYLTYSLKL_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.7586059570312	2	565.310615	1128.60668	0.50927	0.0002879	-0.32094	-0.00018143	0.18833	0.00010647	565.3102410365456	63.507	0.83724	63.602	63.282	64.119	0.095722					83	29	4	0	0	0	0.18479	1	15756	15756		34.932	34.932	1	2444600			8282	2784	4496	4496	10929	10929					0.04751763071703863
EYLTYSLKL	9	Unmodified	_EYLTYSLKL_					0	0	0		ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.758544921875	2	565.310615	1128.60668	0.44665	0.0002525	-0.26978	-0.00015251	0.17687	9.9987E-05	565.3102726834559	63.692	0.74334	63.683	63.435	64.178	-0.0085526					73	26	4	0	0	0	0.099099	1	15786	15786		47.594	47.594	1	2531700			8283	2784	4496	4496	10930	10930					0.04751763071703863
EYMAQHLVF	9	Oxidation (M)	_EYM(Oxidation (M))AQHLVF_		EYM(1)AQHLVF		EYM(130)AQHLVF	0	0	1		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;nc|ENSG00000143093|Q5VSL9-3|STRIP1;ENST00000473429.5_1_1:110591964-110592183:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.2711181640625	2	577.270967	1152.52738	0.32212	0.00018595	-0.22547	-0.00013016	0.096653	5.5795E-05	577.2708683179701	50.082	1.0254	50.082	49.793	50.818	0					101	37	4	0	0	0	0.00033443	2	11614	11562;11614		131.27	97.165	1	2751800			8284	4478	4497	4497	10931;10932	10932		565			-0.04278207154084157
EYMAQHLVF	9	Oxidation (M)	_EYM(Oxidation (M))AQHLVF_		EYM(1)AQHLVF		EYM(120)AQHLVF	0	0	1		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;nc|ENSG00000143093|Q5VSL9-3|STRIP1;ENST00000473429.5_1_1:110591964-110592183:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.2709350585938	2	577.270967	1152.52738	0.66945	0.00038646	-0.48559	-0.00028032	0.18386	0.00010614	577.2707216010784	50.043	1.019	50.088	49.801	50.82	0.044891					104	37	5	0	0	0	0.0013036	3	11589	11536;11589;11641		118.89	84.792	1	2918600			8285	4478	4497	4497	10933;10934;10935	10934		565			-0.04278207154084157
EYMAQHLVF	9	Oxidation (M)	_EYM(Oxidation (M))AQHLVF_		EYM(1)AQHLVF		EYM(140)AQHLVF	0	0	1		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;nc|ENSG00000143093|Q5VSL9-3|STRIP1;ENST00000473429.5_1_1:110591964-110592183:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.2710571289062	2	577.270967	1152.52738	0.62718	0.00036205	-0.42491	-0.00024529	0.20227	0.00011677	577.2706977563561	50.06	0.96413	50.08	49.776	50.74	0.020691					103	35	4	0	0	0	0.00011048	2	11601	11550;11601		139.14	105.04	1	3049400			8286	4478	4497	4497	10936;10937	10937		565			-0.04278207154084157
EYMEHVYLI	9	Oxidation (M)	_EYM(Oxidation (M))EHVYLI_		EYM(1)EHVYLI		EYM(170)EHVYLI	0	0	1		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.7852783203125	2	606.783907	1211.55326	0.70336	0.00042679	-0.959	-0.00058191	-0.25564	-0.00015512	606.78388705767	54.171	2.4761	54.171	53.516	55.992	0					276	90	6	0	0	0	2.4571E-07	9	12831	12781;12831;12880;12932;12977;13029;13077;13130;13349		170.55	136.15	1	43620000			8287	3499	4498	4498	10938;10939;10940;10941;10942;10943;10944;10945;10946	10939		442			-0.04405357702466972
EYMEHVYLI	9	Oxidation (M)	_EYM(Oxidation (M))EHVYLI_		EYM(1)EHVYLI		EYM(170)EHVYLI	0	0	1		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.784423828125	2	606.783907	1211.55326	0.61433	0.00037276	-0.90111	-0.00054678	-0.28678	-0.00017401	606.7838910134799	54.095	2.4149	54.158	53.567	55.982	0.063202					299	90	6	0	0	0	2.4571E-07	11	12796	12743;12754;12796;12845;12897;12948;12997;13051;13107;13196;13250		170.55	138.25	1	44709000			8288	3499	4498	4498	10947;10948;10949;10950;10951;10952;10953;10954;10955;10956;10957	10949		442			-0.04405357702466972
EYMEHVYLI	9	Oxidation (M)	_EYM(Oxidation (M))EHVYLI_		EYM(1)EHVYLI		EYM(170)EHVYLI	0	0	1		nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENSG00000130703|ENST00000313733|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	nc|ENSG00000130703|Q9H1P3-2|OSBPL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.7845458984375	2	606.783907	1211.55326	0.51595	0.00031307	-0.51844	-0.00031458	-0.0024957	-1.5143E-06	606.7840913343473	54.329	2.2692	54.313	53.893	56.162	-0.015923					253	82	6	0	0	0	2.4571E-07	11	12864	12823;12864;12909;12957;13006;13050;13104;13152;13205;13271;13338		170.55	138.25	1	44623000			8289	3499	4498	4498	10958;10959;10960;10961;10962;10963;10964;10965;10966;10967;10968	10959		442			-0.04405357702466972
EYMEVRERI	9	Oxidation (M)	_EYM(Oxidation (M))EVRERI_		EYM(1)EVRERI		EYM(44)EVRERI	0	0	1		ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	ENSG00000086598|ENST00000262225|TMED2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.20458984375	3	414.204534	1239.59177	0.16011	6.6317E-05	-0.46631	-0.00019315	-0.30621	-0.00012683	414.204357602793	29.433	1.14	29.433	29.169	30.309	0					104	40	4	0	0	0	0.072885	1	5279	5279		44.392	21.617	1	2304700			8290	1284	4499	4499	10969	10969		152			-0.01844052067940538
EYMIFDHEF	9	Oxidation (M)	_EYM(Oxidation (M))IFDHEF_		EYM(1)IFDHEF		EYM(130)IFDHEF	0	0	1		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.7579956054688	2	623.757889	1245.50123	0.35034	0.00021852	-0.15372	-9.5884E-05	0.19662	0.00012264	623.7577412370164	63.188	0.65165	63.188	62.905	63.557	0					59	23	3	0	0	0	0.00056175	2	15654	15606;15654		128.37	107.95	1	888730			8291	4192	4500	4500	10970;10971	10971		537			-0.11170521116218879
EYMIFDHEF	9	Oxidation (M)	_EYM(Oxidation (M))IFDHEF_		EYM(1)IFDHEF		EYM(150)IFDHEF	0	0	1		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.7578735351562	2	623.757889	1245.50123	0.12137	7.5705E-05	-0.0047946	-2.9907E-06	0.11658	7.2715E-05	623.7578649363135	63.017	0.62361	63.113	62.854	63.477	0.095722					62	22	4	0	0	0	4.3382E-05	1	15588	15588		149.99	129.58	1	940620			8292	4192	4500	4500	10972	10972		537			-0.11170521116218879
EYMIFDHEF	9	Oxidation (M)	_EYM(Oxidation (M))IFDHEF_		EYM(1)IFDHEF		EYM(150)IFDHEF	0	0	1		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.7578735351562	2	623.757889	1245.50123	0.2307	0.0001439	0.20908	0.00013042	0.43978	0.00027432	623.7579658612239	63.214	0.85646	63.206	62.938	63.795	-0.0085564					66	30	3	0	0	0	4.3382E-05	2	15612	15612;15661		149.99	127.26	1	820920			8293	4192	4500	4500	10973;10974	10973		537			-0.11170521116218879
EYMIQFNRL	9	Oxidation (M)	_EYM(Oxidation (M))IQFNRL_		EYM(1)IQFNRL		EYM(130)IQFNRL	0	0	1		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	615.3034057617188	2	615.302798	1228.59104	0.27792	0.000171	0.27632	0.00017002	0.55424	0.00034102	615.3026070896782	57.536	0.73816	57.536	57.165	57.904	0					54	26	3	0	0	0	0.00014042	1	13921	13921		134.3	105.81	1	920240			8294	3489	4501	4501	10975	10975		441			-0.014108467169990035
EYMIQFNRL	9	Oxidation (M)	_EYM(Oxidation (M))IQFNRL_					0	0	1		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	615.302798	1228.59104	0.19789	0.00012176	-0.27441	-0.00016884	-0.076519	-4.7082E-05	615.3026017241025	57.351	0.52697	57.437	57.132	57.659	0.085621	-0.11995	-0.00047725	NaN	134.3	44	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1280400			8295	3489	4501	4501				441			-0.014108467169990035
EYMIQFNRL	9	Oxidation (M)	_EYM(Oxidation (M))IQFNRL_					0	0	1		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	615.302798	1228.59104	0.11333	6.9731E-05	0.24295	0.00014949	0.35628	0.00021922	615.3025514265094	57.714	0.93681	57.697	57.364	58.3	-0.017197	0.14018	0.00015942	NaN	134.3	67	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	900980			8296	3489	4501	4501				441			-0.014108467169990035
EYMKALGVGF	10	Oxidation (M)	_EYM(Oxidation (M))KALGVGF_		EYM(1)KALGVGF		EYM(150)KALGVGF	0	0	1		ENSG00000164434|ENST00000368444|FABP7;nc|ENSG00000164434|O15540-2|FABP7	ENSG00000164434|ENST00000368444|FABP7	ENSG00000164434|ENST00000368444|FABP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7816772460938	2	565.781167	1129.54778	0.29736	0.00016824	-0.28218	-0.00015965	0.015175	8.5856E-06	565.7814263897644	49.995	1.3784	49.995	49.6	50.978	0					185	50	5	0	0	0	6.499E-06	6	11545	11494;11545;11592;11635;11687;11738		152.89	100.62	1	33420000			8297	5844	4502	4502	10976;10977;10978;10979;10980;10981	10977		692			-0.011810364942675733
EYMKALGVGF	10	Oxidation (M)	_EYM(Oxidation (M))KALGVGF_		EYM(1)KALGVGF		EYM(150)KALGVGF	0	0	1		ENSG00000164434|ENST00000368444|FABP7;nc|ENSG00000164434|O15540-2|FABP7	ENSG00000164434|ENST00000368444|FABP7	ENSG00000164434|ENST00000368444|FABP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.7815551757812	2	565.781167	1129.54778	0.63901	0.00036154	-0.55143	-0.00031199	0.087578	4.955E-05	565.7812613919721	49.961	1.3886	50.006	49.621	51.009	0.044891					192	51	5	0	0	0	6.499E-06	6	11522	11481;11522;11570;11619;11671;11724		152.89	100.62	1	33082000			8298	5844	4502	4502	10982;10983;10984;10985;10986;10987	10983		692			-0.011810364942675733
EYMKALGVGF	10	Oxidation (M)	_EYM(Oxidation (M))KALGVGF_		EYM(1)KALGVGF		EYM(150)KALGVGF	0	0	1		ENSG00000164434|ENST00000368444|FABP7;nc|ENSG00000164434|O15540-2|FABP7	ENSG00000164434|ENST00000368444|FABP7	ENSG00000164434|ENST00000368444|FABP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7815551757812	2	565.781167	1129.54778	0.54182	0.00030655	-0.46091	-0.00026078	0.080903	4.5773E-05	565.7812921374525	50.019	1.4625	50.04	49.591	51.053	0.020691					203	54	5	0	0	0	6.499E-06	7	11525	11472;11525;11573;11613;11664;11716;11769		152.89	100.19	1	32542000			8299	5844	4502	4502	10988;10989;10990;10991;10992;10993;10994	10989		692			-0.011810364942675733
EYMKHTRLF	9	Oxidation (M)	_EYM(Oxidation (M))KHTRLF_		EYM(1)KHTRLF		EYM(86)KHTRLF	0	0	1		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.21051025390625	3	414.209619	1239.60703	-0.19403	-8.0371E-05	0.34348	0.00014227	0.14944	6.1901E-05	414.2104739337982	25.799	2.7397	25.799	25.413	28.153	0					347	95	6	0	0	0	0.0058682	6	4171	4112;4130;4171;4211;4257;4299		85.764	54.303	1	37678000			8300	7014	4503	4503	10995;10996;10997;10998;10999;11000	10997		788			-0.003191404800872988
EYMKHTRLF	9	Oxidation (M)	_EYM(Oxidation (M))KHTRLF_		EYM(1)KHTRLF		EYM(150)KHTRLF	0	0	1		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.8109130859375	2	620.81079	1239.60703	0.113	7.0149E-05	0.036165	2.2451E-05	0.14916	9.26E-05	620.8108311572869	25.799	1.3371	25.799	25.504	26.841	0					128	46	4	0	0	0	6.0404E-05	2	4156	4156;4194		147.24	125.7	1	2513500			8301	7014	4503	4503	11001;11002	11001		788			-0.003191404800872988
EYMKHTRLF	9	Oxidation (M)	_EYM(Oxidation (M))KHTRLF_		EYM(1)KHTRLF		EYM(91)KHTRLF	0	0	1		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2104187011719	3	414.209619	1239.60703	0.067635	2.8015E-05	0.064823	2.685E-05	0.13246	5.4865E-05	414.2103564346761	25.852	2.6659	25.813	25.412	28.078	-0.038671					339	93	5	0	0	0	0.0044119	4	4229	4140;4185;4229;4270		91.085	53.834	1	38787000			8302	7014	4503	4503	11003;11004;11005;11006	11005		788			-0.003191404800872988
EYMKHTRLF	9	Oxidation (M)	_EYM(Oxidation (M))KHTRLF_		EYM(1)KHTRLF		EYM(120)KHTRLF	0	0	1		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.8108520507812	2	620.81079	1239.60703	-0.1365	-8.4742E-05	0.18865	0.00011711	0.052146	3.2373E-05	620.8109362555981	25.849	1.3501	25.811	25.5	26.85	-0.038671					138	47	5	0	0	0	0.0011116	2	4176	4176;4221		121.35	105.2	1	2711000			8303	7014	4503	4503	11007;11008	11007		788			-0.003191404800872988
EYMKHTRLF	9	Oxidation (M)	_EYM(Oxidation (M))KHTRLF_		EYM(1)KHTRLF		EYM(86)KHTRLF	0	0	1		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.2101745605469	3	414.209619	1239.60703	0.11784	4.8812E-05	0.049802	2.0628E-05	0.16765	6.9441E-05	414.21038418970716	25.875	2.6393	25.853	25.416	28.055	-0.022238					348	93	6	0	0	0	0.0058682	5	4279	4149;4192;4236;4279;4321		85.764	54.303	1	36158000			8304	7014	4503	4503	11009;11010;11011;11012;11013	11012		788			-0.003191404800872988
EYMKHTRLF	9	Oxidation (M)	_EYM(Oxidation (M))KHTRLF_		EYM(1)KHTRLF		EYM(130)KHTRLF	0	0	1		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.8106689453125	2	620.81079	1239.60703	0.076862	4.7717E-05	0.067761	4.2067E-05	0.14462	8.9784E-05	620.8107942277908	25.869	1.3163	25.847	25.552	26.869	-0.022238					137	46	4	0	0	0	0.00024732	3	4172	4172;4214;4266		132.38	110.84	1	2435600			8305	7014	4503	4503	11014;11015;11016	11014		788			-0.003191404800872988
EYMKVQTEI	9	Oxidation (M)	_EYM(Oxidation (M))KVQTEI_		EYM(1)KVQTEI		EYM(55)KVQTEI	0	0	1		nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	nc|ENSG00000135341|O43318-2|MAP3K7	nc|ENSG00000135341|O43318-2|MAP3K7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7811889648438	2	578.781364	1155.54818	0.2699	0.00015621	-0.92974	-0.00053812	-0.65984	-0.0003819	578.7812002578241	34.205	0.61039	34.205	33.808	34.418	0					32	21	2	0	0	0	0.10763	1	6732	6732		55.235	33.698	1	306160			8306	3865	4504	4504	11017	11017		484			-0.023376615650931853
EYMKVQTEI	9	Oxidation (M)	_EYM(Oxidation (M))KVQTEI_		EYM(1)KVQTEI		EYM(55)KVQTEI	0	0	1		nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	nc|ENSG00000135341|O43318-2|MAP3K7	nc|ENSG00000135341|O43318-2|MAP3K7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.7811889648438	2	578.781364	1155.54818	0.48348	0.00027983	-0.47517	-0.00027502	0.008317	4.8137E-06	578.781010522881	34.078	0.47493	34.144	33.93	34.405	0.06636					25	16	2	0	0	0	0.043711	1	6691	6691		55.235	29.835	1	226730			8307	3865	4504	4504	11018	11018		484			-0.023376615650931853
EYMQAQLLL	9	Oxidation (M)	_EYM(Oxidation (M))QAQLLL_		EYM(1)QAQLLL		EYM(100)QAQLLL	0	0	1		ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.7855224609375	2	562.78645	1123.55835	0.45547	0.00025633	-1.0592	-0.0005961	-0.60373	-0.00033977	562.7858458130613	65.644	0.49577	65.644	65.431	65.927	0					51	17	4	0	0	0	0.0033114	4	16378	16350;16371;16378;16425		99.799	31.718	1	1426400			8308	884	4505	4505	11019;11020;11021;11022	11021		114			0.0015094616016995133
EYMQAQLLL	9	Oxidation (M)	_EYM(Oxidation (M))QAQLLL_		EYM(1)QAQLLL		EYM(82)QAQLLL	0	0	1		ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.7877197265625	2	562.78645	1123.55835	0.25666	0.00014445	-0.98374	-0.00055363	-0.72707	-0.00040919	562.7858702426936	65.525	0.62121	65.614	65.434	66.055	0.088882					44	22	3	0	0	0	0.0083926	3	16324	16324;16331;16379		81.89	38.032	1	1420600			8309	884	4505	4505	11023;11024;11025	11023		114			0.0015094616016995133
EYMQAQLLL	9	Oxidation (M)	_EYM(Oxidation (M))QAQLLL_		EYM(1)QAQLLL		EYM(72)QAQLLL	0	0	1		ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.78564453125	2	562.78645	1123.55835	0.40421	0.00022748	-1.4385	-0.00080959	-1.0343	-0.00058211	562.7857725762432	65.605	0.49928	65.594	65.422	65.922	-0.011337					49	17	4	0	0	0	0.014888	1	16364	16364		71.922	28.064	1	1356900			8310	884	4505	4505	11026	11026		114			0.0015094616016995133
EYMSFMNQF	9	2 Oxidation (M)	_EYM(Oxidation (M))SFM(Oxidation (M))NQF_		EYM(1)SFM(1)NQF		EYM(160)SFM(160)NQF	0	0	2		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.7361450195312	2	614.736099	1227.45765	0.56169	0.00034529	-0.70521	-0.00043352	-0.14352	-8.8227E-05	614.7358391548579	54.839	0.97568	54.839	54.374	55.35	0					78	35	4	0	0	0	4.3828E-07	4	13092	12939;12986;13045;13092		163.04	143.4	1	1520300			8311	4004	4506	4506	11027;11028;11029;11030	11030		503;504			-0.14698453885011986
EYMSFMNQF	9	2 Oxidation (M)	_EYM(Oxidation (M))SFM(Oxidation (M))NQF_		EYM(1)SFM(1)NQF		EYM(210)SFM(210)NQF	0	0	2		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	614.736083984375	2	614.736099	1227.45765	0.49364	0.00030346	-0.70011	-0.00043038	-0.20646	-0.00012692	614.7357993868823	54.833	0.93664	54.896	54.353	55.29	0.063206					78	34	3	0	0	0	1.7377E-16	2	13030	12949;13030		206.75	182.73	1	1817200			8312	4004	4506	4506	11031;11032	11032		503;504			-0.14698453885011986
EYMSFMNQF	9	2 Oxidation (M)	_EYM(Oxidation (M))SFM(Oxidation (M))NQF_		EYM(1)SFM(1)NQF		EYM(190)SFM(190)NQF	0	0	2		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	614.7361450195312	2	614.736099	1227.45765	0.54661	0.00033602	-0.53993	-0.00033191	0.006686	4.1101E-06	614.7358718611334	55.044	0.9137	55.026	54.548	55.462	-0.017487					83	33	3	0	0	0	4.1361E-11	1	13038	13038		189.78	167.04	1	1801700			8313	4004	4506	4506	11033	11033		503;504			-0.14698453885011986
EYNAFFYSL	9	Unmodified	_EYNAFFYSL_					0	0	0		ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENSG00000163161|ENST00000285398|ERCC3;ENST00000491292.5_1_2:128018779-128018920:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.2635498046875	2	577.263665	1152.51278	0.49165	0.00028381	0.35147	0.00020289	0.84312	0.0004867	577.2634030996203	83.386	0.8708	83.461	83.08	83.951	0.07534					75	33	3	0	0	0	5.7257E-07	1	21824	21824		157.8	105.53	1	1892100			8314	5655	4507	4507	11034	11034					-0.05737956030566238
EYNAFFYSL	9	Unmodified	_EYNAFFYSL_					0	0	0		ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENSG00000163161|ENST00000285398|ERCC3;ENST00000491292.5_1_2:128018779-128018920:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.263671875	2	577.263665	1152.51278	0.46198	0.00026669	0.42159	0.00024337	0.88358	0.00051006	577.263436101353	83.517	0.74857	83.5	83.187	83.935	-0.016823					90	32	4	0	0	0	0.00078391	1	21823	21823		125.53	81.671	1	2090000			8315	5655	4507	4507	11035	11035					-0.05737956030566238
EYNAFFYSL	9	Unmodified	_EYNAFFYSL_					0	0	0		ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENSG00000163161|ENST00000285398|ERCC3;ENST00000491292.5_1_2:128018779-128018920:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	577.263665	1152.51278	0.51718	0.00029855	0.22573	0.00013031	0.74291	0.00042886	577.2634155989632	83.477	0.78049	83.477	83.174	83.954	0	-0.0022627	-0.00012402	NaN	157.8	70	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1421600			8316	5655	4507	4507							-0.05737956030566238
EYNEVANLF	9	Unmodified	_EYNEVANLF_					0	0	0		nc|ENSG00000111224|Q9NR21-5|PARP11;nc|ENSG00000111224|Q9NR21-2|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;ENSG00000111224|ENST00000228820|PARP11	nc|ENSG00000111224|Q9NR21-5|PARP11	nc|ENSG00000111224|Q9NR21-5|PARP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7589111328125	2	549.758746	1097.50294	0.43806	0.00024083	0.20174	0.00011091	0.6398	0.00035174	549.7587955678506	71.252	1.1131	71.252	70.963	72.076	0					88	39	3	0	0	0	0.0023784	1	18129	18129		107.19	52.413	1	2785000			8317	2352	4508	4508	11036	11036					-0.041911440359626795
EYNEVANLF	9	Unmodified	_EYNEVANLF_					0	0	0		nc|ENSG00000111224|Q9NR21-5|PARP11;nc|ENSG00000111224|Q9NR21-2|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;ENSG00000111224|ENST00000228820|PARP11	nc|ENSG00000111224|Q9NR21-5|PARP11	nc|ENSG00000111224|Q9NR21-5|PARP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7588500976562	2	549.758746	1097.50294	0.46255	0.00025429	0.1827	0.00010044	0.64525	0.00035473	549.7587338261181	71.207	0.96636	71.268	70.987	71.954	0.060783					91	34	4	0	0	0	0.0013036	2	18090	18090;18142		118.89	54.658	1	2895000			8318	2352	4508	4508	11037;11038	11037					-0.041911440359626795
EYNEVANLF	9	Unmodified	_EYNEVANLF_					0	0	0		nc|ENSG00000111224|Q9NR21-5|PARP11;nc|ENSG00000111224|Q9NR21-2|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;ENSG00000111224|ENST00000228820|PARP11	nc|ENSG00000111224|Q9NR21-5|PARP11	nc|ENSG00000111224|Q9NR21-5|PARP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7589721679688	2	549.758746	1097.50294	0.53699	0.00029521	0.098066	5.3913E-05	0.63505	0.00034913	549.758729120997	71.324	0.95856	71.299	71.025	71.983	-0.024872					79	34	3	0	0	0	0.0013036	1	18117	18117		118.89	54.658	1	3026600			8319	2352	4508	4508	11039	11039					-0.041911440359626795
EYNHIFPLL	9	Unmodified	_EYNHIFPLL_					0	0	0		ENST00000549111.5_1_12:103248818-103310977:-|nuORF;ENSG00000171759|ENST00000553106|PAH	ENST00000549111.5_1_12:103248818-103310977:-|nuORF	ENST00000549111.5_1_12:103248818-103310977:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.3031616210938	2	573.303124	1144.5917	0.093329	5.3506E-05	-0.0034707	-1.9898E-06	0.089858	5.1516E-05	573.303141121615	73.407	1.5802	73.407	73.02	74.6	0					156	54	5	0	0	0	0.0033114	7	18736	18687;18736;18783;18825;18886;18935;18993		99.799	70.717	1	8516100			8320	6571	4509	4509	11040;11041;11042;11043;11044;11045;11046	11041					0.025183159943708233
EYNHIFPLL	9	Unmodified	_EYNHIFPLL_					0	0	0		ENST00000549111.5_1_12:103248818-103310977:-|nuORF;ENSG00000171759|ENST00000553106|PAH	ENST00000549111.5_1_12:103248818-103310977:-|nuORF	ENST00000549111.5_1_12:103248818-103310977:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.2877807617188	2	573.303124	1144.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.23	1	76.23	75.73	76.73	0								0	0	0	0.2362	1	19621	19621		10.824	1.4408	1				8321	6571	4509	4509	11047	11047					0.025183159943708233
EYNHIFPLL	9	Unmodified	_EYNHIFPLL_					0	0	0		ENST00000549111.5_1_12:103248818-103310977:-|nuORF;ENSG00000171759|ENST00000553106|PAH	ENST00000549111.5_1_12:103248818-103310977:-|nuORF	ENST00000549111.5_1_12:103248818-103310977:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.30322265625	2	573.303124	1144.5917	0.23205	0.00013304	-0.19788	-0.00011344	0.034176	1.9593E-05	573.303010660171	73.381	1.5401	73.435	72.98	74.521	0.053833					161	54	5	0	0	0	0.0028626	7	18760	18672;18718;18760;18801;18847;18921;18974		103.35	51.844	1	8097200			8322	6571	4509	4509	11048;11049;11050;11051;11052;11053;11054	11050					0.025183159943708233
EYNHIFPLL	9	Unmodified	_EYNHIFPLL_					0	0	0		ENST00000549111.5_1_12:103248818-103310977:-|nuORF;ENSG00000171759|ENST00000553106|PAH	ENST00000549111.5_1_12:103248818-103310977:-|nuORF	ENST00000549111.5_1_12:103248818-103310977:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.2864990234375	2	573.303124	1144.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.764	1	75.818	75.318	76.318	0.053284								0	0	0	0.22065	1	19472	19472		15.847	2.8047	1				8323	6571	4509	4509	11055	11055					0.025183159943708233
EYNHIFPLL	9	Unmodified	_EYNHIFPLL_					0	0	0		ENST00000549111.5_1_12:103248818-103310977:-|nuORF;ENSG00000171759|ENST00000553106|PAH	ENST00000549111.5_1_12:103248818-103310977:-|nuORF	ENST00000549111.5_1_12:103248818-103310977:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.302978515625	2	573.303124	1144.5917	0.23792	0.0001364	-0.19671	-0.00011278	0.041205	2.3623E-05	573.30299444394	73.469	1.4882	73.439	73.042	74.53	-0.029305					168	53	5	0	0	0	0.004681	5	18733	18733;18782;18831;18883;18950		88.954	62.07	1	8221500			8324	6571	4509	4509	11056;11057;11058;11059;11060	11056					0.025183159943708233
EYNKRYKIQSI	11	Unmodified	_EYNKRYKIQSI_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2646484375	3	481.264781	1440.77251	0.10844	5.219E-05	0.20081	9.6643E-05	0.30925	0.00014883	481.26470129198304	42.687	0.7318	42.773	42.539	43.271	0.085197					74	26	4	0	0	0	0.38765	1	9307	9307		12.856	0	1	1941200	+		8325	23129	4510	4510	11061	11061					0.06975789580428682
EYNKRYKIQSI	11	Unmodified	_EYNKRYKIQSI_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2650146484375	3	481.264781	1440.77251	0.1021	4.9139E-05	0.16215	7.8037E-05	0.26425	0.00012718	481.2647274456726	42.623	0.71012	42.715	42.413	43.123	0.091362					77	25	4	0	0	0	0.35571	1	9270	9270		17.049	0	1	1791700	+		8326	23129	4510	4510	11062	11062					0.06975789580428682
EYNNIFHTF	9	Unmodified	_EYNNIFHTF_					0	0	0		ENST00000545363.6_1_12:9808558-9809281:+|nuORF	ENST00000545363.6_1_12:9808558-9809281:+|nuORF	ENST00000545363.6_1_12:9808558-9809281:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.7720947265625	2	592.772188	1183.52982	0.51397	0.00030467	-0.47292	-0.00028033	0.041048	2.4332E-05	592.7719425215735	60.493	0.59007	60.493	60.202	60.792	0					34	21	2	0	0	0	0.0028626	1	14784	14784		103.35	86.241	1	1104000			8327	11752	4511	4511	11063	11063					-0.05460035424766829
EYNNIFHTF	9	Unmodified	_EYNNIFHTF_					0	0	0		ENST00000545363.6_1_12:9808558-9809281:+|nuORF	ENST00000545363.6_1_12:9808558-9809281:+|nuORF	ENST00000545363.6_1_12:9808558-9809281:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.7722778320312	2	592.772188	1183.52982	0.36798	0.00021813	-0.38255	-0.00022676	-0.014569	-8.636E-06	592.7720158373853	60.356	0.59461	60.452	60.211	60.805	0.095093					39	21	2	0	0	0	0.0079761	2	14749	14749;14798		82.529	66.38	1	1399400			8328	11752	4511	4511	11064;11065	11064					-0.05460035424766829
EYNNIFHTF	9	Unmodified	_EYNNIFHTF_					0	0	0		ENST00000545363.6_1_12:9808558-9809281:+|nuORF	ENST00000545363.6_1_12:9808558-9809281:+|nuORF	ENST00000545363.6_1_12:9808558-9809281:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.7728271484375	2	592.772188	1183.52982	0.64429	0.00038192	-0.38403	-0.00022764	0.26025	0.00015427	592.7721164412384	60.508	0.58839	60.499	60.249	60.838	-0.0094566					38	21	2	0	0	0	0.0016361	1	14785	14785		114.65	97.536	1	1276400			8329	11752	4511	4511	11066	11066					-0.05460035424766829
EYNNIQHLF	9	Unmodified	_EYNNIQHLF_					0	0	0		ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.2859497070312	2	589.285463	1176.55637	0.30426	0.00017929	0.33749	0.00019888	0.64175	0.00037817	589.2857871999539	55.484	0.70746	55.484	55.174	55.882	0					104	25	5	0	0	0	0.00030721	1	13296	13296		136.33	47.43	1	9060100			8330	5836	4512	4512	11067	11067					-0.024843465334242865
EYNNIQHLF	9	Unmodified	_EYNNIQHLF_					0	0	0		ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.2859497070312	2	589.285463	1176.55637	0.55144	0.00032496	0.17958	0.00010582	0.73102	0.00043078	589.285723436933	55.377	0.76772	55.448	55.112	55.88	0.070885					108	28	5	0	0	0	0.00030721	1	13261	13261		136.33	47.43	1	8802400			8331	5836	4512	4512	11068	11068					-0.024843465334242865
EYNNIQHLF	9	Unmodified	_EYNNIQHLF_					0	0	0		ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.2857666015625	2	589.285463	1176.55637	0.46556	0.00027435	0.24425	0.00014393	0.70981	0.00041828	589.2857187795225	55.647	0.75792	55.628	55.349	56.107	-0.019077					106	27	5	0	0	0	1.5552E-11	3	13335	13283;13335;13387		198.25	109.35	1	8796400			8332	5836	4512	4512	11069;11070;11071	11070					-0.024843465334242865
EYNNNFHVL	9	Unmodified	_EYNNNFHVL_					0	0	0		ENSG00000151151|ENST00000373935|IPMK;ENST00000425988.1_1_13:23411483-23411888:-|nuORF	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.2703247070312	2	575.269813	1148.52507	0.47519	0.00027336	0.14863	8.5503E-05	0.62382	0.00035886	575.2698245572533	48.059	1.7444	48.059	47.797	49.542	0					143	62	4	0	0	0	5.0285E-07	3	10977	10927;10977;11029		160.52	126.41	1	14732000			8333	4942	4513	4513	11072;11073;11074	11073					-0.0432491956753438
EYNNNFHVL	9	Unmodified	_EYNNNFHVL_					0	0	0		ENSG00000151151|ENST00000373935|IPMK;ENST00000425988.1_1_13:23411483-23411888:-|nuORF	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.2700805664062	2	575.269813	1148.52507	0.73483	0.00042273	-0.037915	-2.1812E-05	0.69692	0.00040092	575.2697027433547	47.991	1.6556	48.039	47.772	49.428	0.047523					178	60	5	0	0	0	5.0285E-07	5	10952	10905;10952;11001;11062;11180		160.52	110.58	1	17120000			8334	4942	4513	4513	11075;11076;11077;11078;11079	11076					-0.0432491956753438
EYNNNFHVL	9	Unmodified	_EYNNNFHVL_					0	0	0		ENSG00000151151|ENST00000373935|IPMK;ENST00000425988.1_1_13:23411483-23411888:-|nuORF	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.2705688476562	2	575.269813	1148.52507	0.45768	0.00026329	0.16913	9.7295E-05	0.62681	0.00036059	575.2697896003925	47.965	1.8426	48.008	47.771	49.613	0.04332					164	67	5	0	0	0	5.0285E-07	3	10932	10884;10932;10982		160.52	110.58	1	15924000			8335	4942	4513	4513	11080;11081;11082	11081					-0.0432491956753438
EYNPQHSLL	9	Unmodified	_EYNPQHSLL_					0	0	0		nc|ENSG00000170365|Q15797-2|SMAD1;ENSG00000170365|ENST00000302085|SMAD1	nc|ENSG00000170365|Q15797-2|SMAD1	nc|ENSG00000170365|Q15797-2|SMAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.7726440429688	2	550.772188	1099.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.766	1	41.857	41.357	42.357	0.090252								0	0	0	0.15832	1	9034	9034		32.786	9.6373	1				8336	6447	4514	4514	11083	11083					-0.015960354247454234
EYNSALPLL	9	Unmodified	_EYNSALPLL_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8039245605469	2	510.274032	1018.53351	0.48015	0.00024501	4.2452	0.0021662	4.7254	0.0024112	510.2738877813108	74.316	1.0139	74.316	74.029	75.043	0					92	34	4	0	0	0	0.11397	1	19043	19043		41.84	1.8823	1	2423400			8337	2857	4515	4515	11084	11084					0.02498634349092299
EYNSALPLL	9	Unmodified	_EYNSALPLL_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8036804199219	2	510.274032	1018.53351	0.22369	0.00011415	3.8492	0.0019642	4.0729	0.0020783	510.27408469996396	74.316	0.94016	74.369	74.031	74.971	0.052368					91	32	4	0	0	0	0.082808	1	19054	19054		58.679	14.821	1	2088700			8338	2857	4515	4515	11085	11085					0.02498634349092299
EYNSALPLL	9	Unmodified	_EYNSALPLL_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2741394042969	2	510.274032	1018.53351	0.34949	0.00017834	3.7391	0.001908	4.0886	0.0020863	510.27411107944846	74.357	1.0783	74.327	74.032	75.11	-0.030655					100	38	4	0	0	0	0.023967	1	19052	19052		62.573	18.714	1	2732000			8339	2857	4515	4515	11086	11086					0.02498634349092299
EYNSMAAAFF	10	Oxidation (M)	_EYNSM(Oxidation (M))AAAFF_		EYNSM(1)AAAFF		EYNSM(150)AAAFF	0	0	1		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1500458-1501741:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.7449340820312	2	583.744782	1165.47501	0.54616	0.00031882	-0.23251	-0.00013573	0.31365	0.00018309	583.7445726742963	64.321	1.1905	64.321	63.797	64.988	0					128	43	4	0	0	0	1.5866E-05	4	15964	15915;15964;16013;16064		147.06	118.57	1	2110300			8340	1822	4516	4516	11087;11088;11089;11090	11088		223			-0.10110790287694726
EYNSMAAAFF	10	Oxidation (M)	_EYNSM(Oxidation (M))AAAFF_		EYNSM(1)AAAFF		EYNSM(170)AAAFF	0	0	1		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1500458-1501741:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.7449340820312	2	583.744782	1165.47501	0.42463	0.00024787	-0.16139	-9.4211E-05	0.26324	0.00015366	583.7446223309728	64.211	1.1442	64.304	63.765	64.909	0.09288					134	41	4	0	0	0	9.3634E-09	4	15975	15874;15929;15975;16028		168.66	138.02	1	1962000			8341	1822	4516	4516	11091;11092;11093;11094	11093		223			-0.10110790287694726
EYNSMAAAFF	10	Oxidation (M)	_EYNSM(Oxidation (M))AAAFF_		EYNSM(1)AAAFF		EYNSM(140)AAAFF	0	0	1		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1500458-1501741:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.7448120117188	2	583.744782	1165.47501	0.54123	0.00031594	-0.20815	-0.00012151	0.33308	0.00019443	583.7445890968967	64.241	1.1267	64.231	63.822	64.948	-0.0095291					130	40	4	0	0	0	3.1355E-05	4	15966	15914;15966;16017;16072		137.42	103.66	1	1873700			8342	1822	4516	4516	11095;11096;11097;11098	11096		223			-0.10110790287694726
EYNVLLETL	9	Unmodified	_EYNVLLETL_					0	0	0		ENST00000515119.5_1_4:3517776-3534065:-|nuORF;ENST00000296325.9_1_4:3514703-3533784:-|nuORF;ENSG00000163956|ENST00000650182|LRPAP1	ENST00000515119.5_1_4:3517776-3534065:-|nuORF	ENST00000515119.5_1_4:3517776-3534065:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7794189453125	2	547.292422	1092.57029	0.51557	0.00028217	0.57816	0.00031642	1.0937	0.00059859	547.2921692905813	79.985	0.77425	80.047	79.643	80.417	0.061417					52	25	3	0	0	0	0.074552	1	20809	20809		43.772	3.8227	1	206030			8343	5764	4517	4517	11099	11099					0.0277088617501704
EYPELRGVF	9	Unmodified	_EYPELRGVF_					0	0	0		ENST00000409011.5_2_2:39005336-39005417:+|nuORF	ENST00000409011.5_2_2:39005336-39005417:+|nuORF	ENST00000409011.5_2_2:39005336-39005417:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2850341796875	2	555.284931	1108.55531	-0.048528	-2.6947E-05	-0.28963	-0.00016083	-0.33816	-0.00018777	555.2846913962068	60.135	1.4399	60.135	59.38	60.819	0					134	51	4	0	0	0	0.069366	1	14599	14599		45.7	13.394	1	7269800			8344	10238	4518	4518	11100	11100					0.0053743909768400044
EYPELRGVF	9	Unmodified	_EYPELRGVF_					0	0	0		ENST00000409011.5_2_2:39005336-39005417:+|nuORF	ENST00000409011.5_2_2:39005336-39005417:+|nuORF	ENST00000409011.5_2_2:39005336-39005417:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2850952148438	2	555.284931	1108.55531	-0.28156	-0.00015634	-0.0020925	-1.1619E-06	-0.28365	-0.00015751	555.2848603114068	59.963	1.5689	60.058	59.325	60.894	0.095093					141	56	4	0	0	0	0.12642	1	14565	14565		34.402	4.9646	1	6610200			8345	10238	4518	4518	11101	11101					0.0053743909768400044
EYPELRGVF	9	Unmodified	_EYPELRGVF_					0	0	0		ENST00000409011.5_2_2:39005336-39005417:+|nuORF	ENST00000409011.5_2_2:39005336-39005417:+|nuORF	ENST00000409011.5_2_2:39005336-39005417:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.284912109375	2	555.284931	1108.55531	0.10908	6.0571E-05	-0.30599	-0.00016991	-0.19691	-0.00010934	555.2846983064165	60.096	1.5433	60.084	59.372	60.916	-0.011486					136	55	4	0	0	0	0.079752	1	14605	14605		41.84	16.958	1	6674400			8346	10238	4518	4518	11102	11102					0.0053743909768400044
EYPFILDAF	9	Unmodified	_EYPFILDAF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.777587890625	2	557.776408	1113.53826	0.070833	3.9509E-05	0.33836	0.00018873	0.40919	0.00022824	557.7763643583587	95.807	1.188	95.807	95.5	96.688	0					287	116	4	0	0	0	0.28674	1	25795	25795		10.824	2.9138	1	1895400			8347	594	4519	4519	11103	11103					-0.013964815081408233
EYPFILDAF	9	Unmodified	_EYPFILDAF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7763671875	2	557.776408	1113.53826	0.30733	0.00017142	0.16769	9.3535E-05	0.47502	0.00026495	557.7762723678966	95.811	1.2568	95.807	95.48	96.737	-0.0038223					291	120	4	0	0	0	0.23007	1	25834	25834		19.257	6.7254	1	2549600			8348	594	4519	4519	11104	11104					-0.013964815081408233
EYPFILDAF	9	Unmodified	_EYPFILDAF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX;ENST00000503165.5_1_5:54603841-54625205:+|nuORF	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	557.776408	1113.53826	0.21605	0.00012051	0.23112	0.00012891	0.44717	0.00024942	557.7763148681292	95.66	1.2536	95.737	95.418	96.672	0.077415	-0.046648	-2.9787E-05	NaN	19.257	272	113	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2142000			8349	594	4519	4519							-0.013964815081408233
EYPGVYQQF	9	Unmodified	_EYPGVYQQF_					0	0	0			REV__nc|ENSG00000115705|P07202-6|TPO	REV__nc|ENSG00000115705|P07202-6|TPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.761474609375	2	565.761289	1129.50803	0.323	0.00018274	-0.44359	-0.00025097	-0.12059	-6.8223E-05	565.7611337286069	68.605	1.2616	68.605	68.329	69.59	0					97	45	3	0	0	0	0.068501	1	17279	17279		46.021	2.1627	1	1055800	+		8350	14893	4520	4520	11105	11105					-0.051548401733498395
EYPGVYQQF	9	Unmodified	_EYPGVYQQF_					0	0	0			REV__nc|ENSG00000115705|P07202-6|TPO	REV__nc|ENSG00000115705|P07202-6|TPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.761474609375	2	565.761289	1129.50803	0.36386	0.00020586	-0.38353	-0.00021698	-0.019669	-1.1128E-05	565.7611368554126	68.531	1.1042	68.603	68.33	69.434	0.071938					99	40	4	0	0	0	0.10197	1	17314	17314		37.974	1.847	1	1539200	+		8351	14893	4520	4520	11106	11106					-0.051548401733498395
EYPKFLKRF	9	Unmodified	_EYPKFLKRF_					0	0	0		nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1;nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.9010314941406	3	409.901003	1226.68118	-0.10519	-4.3116E-05	-0.095619	-3.9194E-05	-0.2008	-8.231E-05	409.90104760355683	43.183	2.2594	43.183	42.02	44.28	0					251	82	4	0	0	0	0.0037449	6	9492	9186;9270;9400;9451;9492;9620		96.367	81.118	1	6512200			8352	2477	4521	4521	11107;11108;11109;11110;11111;11112	11111					0.0769057067373069
EYPKFLKRF	9	Unmodified	_EYPKFLKRF_					0	0	0		nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1;nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.90087890625	3	409.901003	1226.68118	0.020942	8.584E-06	-0.41479	-0.00017002	-0.39385	-0.00016144	409.90099295282687	42.65	1.9966	42.735	41.876	43.873	0.085197					237	72	5	0	0	0	0.0054984	6	9217	9110;9156;9217;9261;9301;9353		86.332	74.837	1	7490300			8353	2477	4521	4521	11113;11114;11115;11116;11117;11118	11115					0.0769057067373069
EYPKFLKRF	9	Unmodified	_EYPKFLKRF_					0	0	0		nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1;nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.90118408203125	3	409.901003	1226.68118	0.009269	3.7994E-06	-0.36171	-0.00014827	-0.35244	-0.00014447	409.90100989310287	42.601	2.2985	42.693	41.784	44.083	0.091362					269	83	5	0	0	0	0.0024096	6	9323	9081;9123;9175;9224;9274;9323		106.94	90.791	1	7307700			8354	2477	4521	4521	11119;11120;11121;11122;11123;11124	11124					0.0769057067373069
EYPKYQAEF	9	Unmodified	_EYPKYQAEF_					0	0	0		nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;ENST00000495417.5_1_19:55105185-55110756:+|nuORF;ENSG00000104974|ENST00000251372|LILRA1	nc|ENSG00000131042|Q8N423-4|LILRB2	nc|ENSG00000131042|Q8N423-4|LILRB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3086547851562	2	587.774396	1173.53424	0.6606	0.00038829	1.4854	0.00087307	2.146	0.0012614	587.7752308637297	45.631	0.68338	45.631	45.291	45.974	0					50	24	4	0	0	0	0.082647	1	10213	10213		61.602	36.203	1	604260			8355	3538	4522	4522	11125	11125					-0.04558571001894052
EYPKYQAEF	9	Unmodified	_EYPKYQAEF_					0	0	0		nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;ENST00000495417.5_1_19:55105185-55110756:+|nuORF;ENSG00000104974|ENST00000251372|LILRA1	nc|ENSG00000131042|Q8N423-4|LILRB2	nc|ENSG00000131042|Q8N423-4|LILRB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.775146484375	2	587.774396	1173.53424	0.53096	0.00031209	1.2759	0.00074991	1.8068	0.001062	587.7754305963805	45.232	0.7655	45.3	45.006	45.772	0.068573					54	26	4	0	0	0	0.0098873	1	10079	10079		79.596	46.811	1	650560			8356	3538	4522	4522	11126	11126					-0.04558571001894052
EYPKYQAEF	9	Unmodified	_EYPKYQAEF_					0	0	0		nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;ENST00000495417.5_1_19:55105185-55110756:+|nuORF;ENSG00000104974|ENST00000251372|LILRA1	nc|ENSG00000131042|Q8N423-4|LILRB2	nc|ENSG00000131042|Q8N423-4|LILRB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.7747802734375	2	587.774396	1173.53424	0.46525	0.00027346	1.5239	0.00089571	1.9891	0.0011692	587.7753327726392	45.22	0.67036	45.295	45.042	45.713	0.075047					46	24	3	0	0	0	0.0073901	1	10078	10078		83.429	50.643	1	630340			8357	3538	4522	4522	11127	11127					-0.04558571001894052
EYPLVINTL	9	Unmodified	_EYPLVINTL_					0	0	0		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8167724609375	2	531.297507	1060.58046	0.40961	0.00021762	0.076609	4.0702E-05	0.48622	0.00025833	531.2971880683037	76.392	1.3012	76.392	75.903	77.204	0					95	47	3	0	0	0	0.07944	2	19695	19646;19695		41.956	5.8285	1	1246300			8358	6756	4523	4523	11128;11129	11129					0.05259493900257439
EYPLVINTL	9	Unmodified	_EYPLVINTL_					0	0	0		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8168334960938	2	531.297507	1060.58046	0.21093	0.00011207	-0.60605	-0.00032199	-0.39512	-0.00020992	531.2972365509039	76.33	1.3163	76.384	75.862	77.178	0.053413					120	46	4	0	0	0	0.058995	3	19615	19606;19615;19664		49.554	13.427	1	1396100			8359	6756	4523	4523	11130;11131;11132	11131					0.05259493900257439
EYPLVINTL	9	Unmodified	_EYPLVINTL_					0	0	0		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.81689453125	2	531.297507	1060.58046	0.57865	0.00030743	-0.057941	-3.0784E-05	0.52071	0.00027665	531.2970887019138	76.421	1.3322	76.39	75.881	77.213	-0.031479					84	48	2	0	0	0	0.09758	1	19683	19683		38.615	9.5332	1	1399400			8360	6756	4523	4523	11133	11133					0.05259493900257439
EYPRETFSF	9	Unmodified	_EYPRETFSF_					0	0	0		ENST00000473682.5_1_1:111740397-111743081:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.2724609375	2	588.272021	1174.52949	0.67583	0.00039757	-0.21156	-0.00012445	0.46428	0.00027312	588.2717658650846	54.507	0.87668	54.507	54.162	55.039	0					79	31	3	0	0	0	0.00051734	4	12963	12917;12963;13014;13095		128.93	102.05	1	1810900			8361	5616	4524	4524	11134;11135;11136;11137	11135					-0.050794551446415426
EYPRETFSF	9	Unmodified	_EYPRETFSF_					0	0	0		ENST00000473682.5_1_1:111740397-111743081:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.2722778320312	2	588.272021	1174.52949	0.58825	0.00034605	-0.12392	-7.2898E-05	0.46433	0.00027315	588.271830308642	54.386	0.67067	54.45	54.192	54.863	0.063206					76	24	4	0	0	0	0.00051734	3	12889	12889;12938;12988		128.93	94.531	1	1866400			8362	5616	4524	4524	11138;11139;11140	11138					-0.050794551446415426
EYPRETFSF	9	Unmodified	_EYPRETFSF_					0	0	0		ENST00000473682.5_1_1:111740397-111743081:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.2724609375	2	588.272021	1174.52949	0.69464	0.00040864	-0.23752	-0.00013973	0.45712	0.00026891	588.2717861476871	54.73	0.84887	54.714	54.415	55.264	-0.015919					76	30	3	0	0	0	0.00051734	4	13037	12987;13037;13087;13136		128.93	99.851	1	1863500			8363	5616	4524	4524	11141;11142;11143;11144	11142					-0.050794551446415426
EYQARIPEF	9	Unmodified	_EYQARIPEF_					0	0	0		ENST00000472734.1_1_1:211433019-211434404:+|nuORF;ENST00000528408.5_1_1:211432902-211444674:+|nuORF;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3	ENST00000472734.1_1_1:211433019-211434404:+|nuORF	ENST00000472734.1_1_1:211433019-211434404:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.7879028320312	2	576.787838	1151.56112	0.39682	0.00022888	-0.21677	-0.00012503	0.18005	0.00010385	576.7876493582573	54.118	0.83723	54.181	53.516	54.353	0.063202					65	31	3	0	0	0	0.015924	1	12851	12851		70.332	22.583	1	480720			8364	2804	4525	4525	11145	11145					-0.008594623906901688
EYQARIPEF	9	Unmodified	_EYQARIPEF_					0	0	0		ENST00000472734.1_1_1:211433019-211434404:+|nuORF;ENST00000528408.5_1_1:211432902-211444674:+|nuORF;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3	ENST00000472734.1_1_1:211433019-211434404:+|nuORF	ENST00000472734.1_1_1:211433019-211434404:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.7881469726562	2	576.787838	1151.56112	0.43628	0.00025164	-0.22298	-0.00012861	0.2133	0.00012303	576.7875362339321	54.367	0.76222	54.351	53.893	54.655	-0.015923					58	26	3	0	0	0	0.026579	1	12923	12923		61.602	17.744	1	514730			8365	2804	4525	4525	11146	11146					-0.008594623906901688
EYQARIPEF	9	Unmodified	_EYQARIPEF_					0	0	0		ENST00000472734.1_1_1:211433019-211434404:+|nuORF;ENST00000528408.5_1_1:211432902-211444674:+|nuORF;nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3	ENST00000472734.1_1_1:211433019-211434404:+|nuORF	ENST00000472734.1_1_1:211433019-211434404:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	576.787838	1151.56112	0.49112	0.00028327	-0.11654	-6.722E-05	0.37458	0.00021605	577.2893348955637	54.159	0.84495	54.159	53.806	54.651	0	-0.07122	8.4608E-05	NaN	70.332	56	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565160			8366	2804	4525	4525							-0.008594623906901688
EYQIKMKQF	9	Oxidation (M)	_EYQIKM(Oxidation (M))KQF_		EYQIKM(1)KQF		EYQIKM(46)KQF	0	0	1			REV__ENSG00000135315|ENST00000403245|CEP162	REV__ENSG00000135315|ENST00000403245|CEP162	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	615.81103515625	2	615.812999	1229.61144	0.24432	0.00015045	-0.99646	-0.00061363	-0.75214	-0.00046318	615.8126787957357	66.727	1.4729	66.727	66.369	67.842	0					118	50	4	0	0	0	0.068501	1	16664	16664		46.021	6.0713	1	2830700	+		8367	15731	4526	4526	11147	11147		997			0.005823239428082161
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2669677734375	2	543.266739	1084.51892	0.5379	0.00029222	0.19982	0.00010855	0.73771	0.00040077	543.2666410175062	31.913	0.88812	31.913	31.745	32.633	0					54	31	3	0	0	0	0.00012746	1	6019	6019		136.39	85.537	1	1010300			8368	7095	4527	4527	11148	11148					-0.019954377990416106
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.26708984375	2	543.266739	1084.51892	0.67956	0.00036918	0.2192	0.00011908	0.89875	0.00048826	543.266649574293	31.867	0.75632	31.909	31.709	32.465	0.042364					46	26	3	0	0	0	3.4202E-05	2	5992	5992;6055		151.48	81.148	1	1157200			8369	7095	4527	4527	11149;11150	11149					-0.019954377990416106
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.266845703125	2	543.266739	1084.51892	0.61457	0.00033387	0.34114	0.00018533	0.95571	0.0005192	543.2666270456706	31.837	0.97245	31.878	31.672	32.644	0.040991					56	34	3	0	0	0	7.3453E-05	1	5992	5992		145.13	91.297	1	987240			8370	7095	4527	4527	11151	11151					-0.019954377990416106
EYQKVWNLF	9	Unmodified	_EYQKVWNLF_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.814208984375	2	613.813856	1225.61316	0.29389	0.00018039	0.25076	0.00015392	0.54465	0.00033431	613.8140137815052	68.821	1.2967	68.821	68.491	69.787	0					134	46	4	0	0	0	5.7257E-07	3	17327	17327;17372;17422		157.8	119.82	1	4501900			8371	741	4528	4528	11152;11153;11154	11152					0.009377010230764427
EYQKVWNLF	9	Unmodified	_EYQKVWNLF_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	613.8142700195312	2	613.813856	1225.61316	0.2934	0.00018009	0.34554	0.0002121	0.63894	0.00039219	613.8140512901255	68.811	1.855	68.883	68.563	70.418	0.071938					165	66	4	0	0	0	2.5511E-05	3	17303	17303;17350;17390		152.89	109.03	1	4545400			8372	741	4528	4528	11155;11156;11157	11155					0.009377010230764427
EYQKVWNLF	9	Unmodified	_EYQKVWNLF_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	613.81396484375	2	613.813856	1225.61316	0.24566	0.00015079	0.45294	0.00027802	0.6986	0.00042881	613.8141525581492	68.903	1.7875	68.884	68.547	70.334	-0.019157					167	64	4	0	0	0	5.7257E-07	3	17335	17335;17380;17433		157.8	119.82	1	5266500			8373	741	4528	4528	11158;11159;11160	11158					0.009377010230764427
EYQVRHKK	8	Unmodified	_EYQVRHKK_					0	0	0			REV__ENSG00000048544|ENST00000053468|MRPS10	REV__ENSG00000048544|ENST00000053468|MRPS10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.769287109375	2	544.30399	1086.59343	0.57797	0.00031459	0.82467	0.00044887	1.4026	0.00076346	544.3042389651421	21.17	0.54815	21.17	20.853	21.401	0					29	18	2	0	0	0	0.34408	1	2719	2719		2.3027	0.4585	1	67302	+		8374	13550	4529	4529	11161	11161					0.053593698029771986
EYRDWWTK	8	Unmodified	_EYRDWWTK_					0	0	0			REV__ENST00000442740.1_2_3:48475374-48481489:-|nuORF	REV__ENST00000442740.1_2_3:48475374-48481489:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.2999267578125	2	592.28018	1182.54581	0.53037	0.00031413	-0.37914	-0.00022456	0.15123	8.9571E-05	592.279856641889	53.99	1.0259	53.974	53.579	54.605	-0.015923					77	36	3	0	0	0	0.41097	1	12707	12707		18.135	1.0221	1	482550	+		8375	13142	4530	4530	11162	11162					-0.038163291878845484
EYRKNEQF	8	Unmodified	_EYRKNEQF_					0	0	0			REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7846069335938	2	557.269813	1112.52507	0.39275	0.00021887	1.9613	0.001093	2.354	0.0013118	557.2710988723617	53.128	0.19663	53.128	53.062	53.259	0					8	6	2	0	0	0	0.32778	1	12537	12537		20.871	0	1	161320	+		8376	14682	4531	4531	11163	11163					-0.026689195675317023
EYRKNEQF	8	Unmodified	_EYRKNEQF_					0	0	0			REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7846069335938	2	557.269813	1112.52507	0.60475	0.00033701	1.2612	0.00070283	1.8659	0.0010398	557.2704143044792	53.082	0.23358	53.138	53.013	53.247	0.056255					10	7	2	0	0	0	0.32778	1	12524	12524		20.871	1.4322	1	229110	+		8377	14682	4531	4531	11164	11164					-0.026689195675317023
EYRKVFENF	9	Unmodified	_EYRKVFENF_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.3092041015625	2	616.308938	1230.60332	0.18605	0.00011467	-0.0091702	-5.6517E-06	0.17688	0.00010901	616.3087940100003	43.269	0.7327	43.269	43.008	43.741	0					52	26	3	0	0	0	0.12329	1	9497	9497		49.554	34.716	1	693500			8378	4302	4532	4532	11165	11165					-0.0027548698228656576
EYRKVFENF	9	Unmodified	_EYRKVFENF_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	616.308938	1230.60332	0.083751	5.1617E-05	0.033592	2.0703E-05	0.11734	7.232E-05	616.3089186280554	42.797	0.59555	42.882	42.618	43.214	0.085197	-0.10819	-0.00010491	NaN	100.71	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	718140			8379	4302	4532	4532							-0.0027548698228656576
EYRKVFENF	9	Unmodified	_EYRKVFENF_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	616.308938	1230.60332	0.0057795	3.562E-06	0.38662	0.00023828	0.3924	0.00024184	616.3090678784105	42.727	0.59537	42.819	42.527	43.123	0.091362	-0.17112	0.00033024	NaN	100.71	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	756130			8380	4302	4532	4532							-0.0027548698228656576
EYRPEFSNF	9	Unmodified	_EYRPEFSNF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19931694-19949148:+|nuORF	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.7699584960938	2	594.769645	1187.52474	0.45295	0.0002694	0.13334	7.9308E-05	0.58629	0.00034871	594.76966722638	51.766	0.95179	51.766	51.456	52.408	0					94	34	4	0	0	0	0.00024732	2	12101	12101;12148		132.38	94.204	1	4978600			8381	1775	4533	4533	11166;11167	11166					-0.06152339287382347
EYRPEFSNF	9	Unmodified	_EYRPEFSNF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19931694-19949148:+|nuORF	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7699584960938	2	594.769645	1187.52474	0.49015	0.00029153	0.02423	1.4411E-05	0.51438	0.00030594	594.7696783796672	51.733	0.95805	51.78	51.347	52.305	0.046574					89	34	4	0	0	0	5.4053E-05	3	12084	12084;12127;12174		148.27	102.57	1	5275700			8382	1775	4533	4533	11168;11169;11170	11168					-0.06152339287382347
EYRPEFSNF	9	Unmodified	_EYRPEFSNF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19931694-19949148:+|nuORF	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.7698974609375	2	594.769645	1187.52474	0.21415	0.00012737	0.098695	5.8701E-05	0.31284	0.00018607	594.7697816656402	51.952	1.0274	51.951	51.55	52.578	-0.00080872					109	37	4	0	0	0	0.00012746	3	12151	12151;12202;12253		136.39	86.838	1	4301400			8383	1775	4533	4533	11171;11172;11173	11171					-0.06152339287382347
EYRQVIESSR	10	Unmodified	_EYRQVIESSR_					0	0	0		ENST00000397843.6_2_11:120291521-120295070:+|nuORF	ENST00000397843.6_2_11:120291521-120295070:+|nuORF	ENST00000397843.6_2_11:120291521-120295070:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.8250732421875	2	633.825483	1265.63641	0.1979	0.00012543	-0.3725	-0.0002361	-0.1746	-0.00011067	633.8252017333397	100.13	0.68082	100.17	99.768	100.45	0.038994					196	89	3	0	0	0	0.40262	1	26776	26776		2.9952	0.49676	1	243740			8384	10146	4534	4534	11174	11174					0.014220950697335866
EYSDVLAKL	9	Unmodified	_EYSDVLAKL_					0	0	0		ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	ENSG00000126705|ENST00000673934|AHDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2794189453125	2	519.279315	1036.54408	0.18914	9.8216E-05	0.65636	0.00034084	0.8455	0.00043905	519.2795401810587	57.559	0.56987	57.541	57.197	57.767	-0.0172					53	20	4	0	0	0	0.17277	1	13897	13897		27.629	11.782	1	665730			8385	3282	4535	4535	11175	11175					0.027266170035318282
EYSIVIQQL	9	Unmodified	_EYSIVIQQL_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.80078125	2	546.800414	1091.58628	0.48488	0.00026514	0.70971	0.00038807	1.1946	0.0006532	546.8007418878123	71.319	1.2782	71.319	70.989	72.267	0					117	45	4	0	0	0	1.2283E-05	2	18103	18103;18148		155.03	80.097	1	6262700			8386	8566	4536	4536	11176;11177	11176					0.04414592411899321
EYSIVIQQL	9	Unmodified	_EYSIVIQQL_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8370361328125	2	546.800414	1091.58628	0.5298	0.00028969	1.16	0.00063431	1.6898	0.00092401	546.8007477475742	72.375	0.26479	72.375	72.241	72.506	0					13	9	2	0	0	0	0.21389	1	18446	18446		25.399	4.9457	1	78166			8387	8566	4536	4536	11178	11178					0.04414592411899321
EYSIVIQQL	9	Unmodified	_EYSIVIQQL_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.80078125	2	546.800414	1091.58628	0.555	0.00030348	0.41059	0.00022451	0.96559	0.00052799	546.8006453275641	71.255	1.59	71.316	70.987	72.577	0.060783					119	57	3	0	0	0	1.2283E-05	2	18089	18089;18141		155.03	80.097	1	6478400			8388	8566	4536	4536	11179;11180	11179					0.04414592411899321
EYSIVIQQL	9	Unmodified	_EYSIVIQQL_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8008422851562	2	546.800414	1091.58628	0.6421	0.0003511	0.47889	0.00026185	1.121	0.00061296	546.8006434704934	71.328	1.4954	71.303	71.025	72.52	-0.024864					117	53	4	0	0	0	1.2283E-05	2	18098	18098;18150		155.03	80.097	1	7214000			8389	8566	4536	4536	11181;11182	11181					0.04414592411899321
EYSKQMQRF	9	Oxidation (M)	_EYSKQM(Oxidation (M))QRF_		EYSKQM(1)QRF		EYSKQM(96)QRF	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.7899780273438	2	616.790055	1231.56556	0.072685	4.4831E-05	-0.11165	-6.8863E-05	-0.038962	-2.4032E-05	616.7900143806055	18.321	1.0101	18.321	18.024	19.034	0					108	35	5	0	0	0	0.0037449	2	1916	1866;1916		96.367	72.346	1	1360000			8390	7884;2727	4537	4537	11183;11184	11184		344			-0.04096321239421741
EYSKQMQRF	9	Oxidation (M)	_EYSKQM(Oxidation (M))QRF_		EYSKQM(1)QRF		EYSKQM(68)QRF	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.5297546386719	3	411.529129	1231.56556	-0.18681	-7.6876E-05	-0.33469	-0.00013773	-0.5215	-0.00021461	411.52959813410973	18.331	1.6092	18.331	17.991	19.6	0					207	56	6	0	0	0	0.017549	2	1896	1896;1941		67.838	44.048	1	7419900			8391	7884;2727	4537	4537	11185;11186	11185		344			-0.04096321239421741
EYSKQMQRF	9	Oxidation (M)	_EYSKQM(Oxidation (M))QRF_		EYSKQM(1)QRF		EYSKQM(90)QRF	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.5296630859375	3	411.529129	1231.56556	-0.0052949	-2.179E-06	-0.50909	-0.00020951	-0.51439	-0.00021169	411.52950658267514	18.519	1.8289	18.402	18.038	19.867	-0.11739					222	63	6	0	0	0	0.0045319	2	1952	1952;1995		90.135	56.69	1	7625700			8392	7884;2727	4537	4537	11187;11188	11187		344			-0.04096321239421741
EYSKQMQRF	9	Oxidation (M)	_EYSKQM(Oxidation (M))QRF_		EYSKQM(1)QRF		EYSKQM(140)QRF	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.7899780273438	2	616.790055	1231.56556	-0.033414	-2.0609E-05	-0.049935	-3.08E-05	-0.083349	-5.1409E-05	616.7900591317411	18.505	1.086	18.388	18.117	19.203	-0.11739					119	37	5	0	0	0	8.0996E-05	1	1953	1953		143.91	96.16	1	1318800			8393	7884;2727	4537	4537	11189	11189		344			-0.04096321239421741
EYSKQMQRF	9	Oxidation (M)	_EYSKQM(Oxidation (M))QRF_		EYSKQM(1)QRF		EYSKQM(90)QRF	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.52978515625	3	411.529129	1231.56556	-0.19442	-8.0008E-05	-0.28597	-0.00011769	-0.48039	-0.0001977	411.52962582318725	18.517	1.6443	18.459	18.115	19.759	-0.058174					196	57	6	0	0	0	0.0045319	3	1952	1952;1994;2045		90.135	49.896	1	8703600			8394	7884;2727	4537	4537	11190;11191;11192	11190		344			-0.04096321239421741
EYSKQMQRF	9	Oxidation (M)	_EYSKQM(Oxidation (M))QRF_		EYSKQM(1)QRF		EYSKQM(130)QRF	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.7899780273438	2	616.790055	1231.56556	-0.1329	-8.1971E-05	0.0062236	3.8387E-06	-0.12668	-7.8132E-05	616.7901487537326	18.513	1.136	18.455	18.199	19.335	-0.058172					111	39	5	0	0	0	0.00051734	1	1953	1953		128.93	72.755	1	1548100			8395	7884;2727	4537	4537	11193	11193		344			-0.04096321239421741
EYSKVLQFKYF	11	Unmodified	_EYSKVLQFKYF_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.8160705566406	3	484.590494	1450.74965	-0.44064	-0.00021353	0.68402	0.00033147	0.24338	0.00011794	484.59070811460185	59.947	0.48602	60.042	59.855	60.341	0.095093					44	17	3	0	0	0	0.33146	1	14704	14704		6.6235	2.2173	1	562880			8396	3405	4538	4538	11194	11194					0.04230770462936562
EYSKYLQQAF	10	Unmodified	_EYSKYLQQAF_					0	0	0		nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.814208984375	2	638.814053	1275.61355	0.59944	0.00038293	-0.039217	-2.5052E-05	0.56022	0.00035788	638.8139699251973	53.92	0.98026	53.92	53.622	54.602	0					96	35	4	0	0	0	1.1034E-05	1	12791	12791		159.1	132.83	1	2808600			8397	5603	4539	4539	11195	11195					-0.013229240477357962
EYSKYLQQAF	10	Unmodified	_EYSKYLQQAF_					0	0	0		nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.814453125	2	638.814053	1275.61355	0.49797	0.00031811	0.13002	8.3055E-05	0.62799	0.00040117	638.8140289128927	53.841	0.73708	53.897	53.638	54.375	0.056255					85	27	4	0	0	0	0.0062504	1	12706	12706		147.24	129.09	1	3138800			8398	5603	4539	4539	11196	11196					-0.013229240477357962
EYSKYLQQAF	10	Unmodified	_EYSKYLQQAF_					0	0	0		nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.8143310546875	2	638.814053	1275.61355	0.72278	0.00046172	-0.12637	-8.0725E-05	0.59641	0.000381	638.813867716378	54.199	1.0312	54.183	53.893	54.924	-0.015923					96	36	4	0	0	0	0.00013803	1	12819	12819		171.46	136.53	1	3069400			8399	5603	4539	4539	11197	11197					-0.013229240477357962
EYSLPVLTF	9	Unmodified	_EYSLPVLTF_					0	0	0		nc|ENSG00000106278|P23471-3|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1	nc|ENSG00000106278|P23471-3|PTPRZ1	nc|ENSG00000106278|P23471-3|PTPRZ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7840576171875	2	534.784233	1067.55391	0.74044	0.00039598	-0.56495	-0.00030213	0.17549	9.3849E-05	534.7837946110046	84.044	0.74963	84.044	83.835	84.584	0					43	29	2	0	0	0	0.21389	1	22050	22050		25.399	0	1	184860			8400	2068	4540	4540	11198	11198					0.022838050088694217
EYSPFFRK	8	Unmodified	_EYSPFFRK_					0	0	0		ENST00000265970.11_1_11:17135933-17139054:-|nuORF	ENST00000265970.11_1_11:17135933-17139054:-|nuORF	ENST00000265970.11_1_11:17135933-17139054:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.806640625	2	537.274367	1072.53418	0.5223	0.00028062	-0.31482	-0.00016915	0.20748	0.00011147	537.2740107808916	32.441	0.45912	32.495	32.223	32.682	0.054371					27	16	2	0	0	0	0.34131	1	6200	6200		12.532	0.89125	1	142280			8401	9056	4541	4541	11199	11199					0.0008147378880494216
EYSRFVNQI	9	Unmodified	_EYSRFVNQI_					0	0	0		ENST00000483237.1_1_1:155891178-155891799:-|nuORF;ENST00000478002.5_1_1:155885750-155895538:-|nuORF;nc|ENSG00000132680|Q7Z7F0-3|KHDC4;nc|ENSG00000132680|Q7Z7F0-2|KHDC4;ENSG00000132680|ENST00000368321|KHDC4	ENST00000483237.1_1_1:155891178-155891799:-|nuORF	ENST00000483237.1_1_1:155891178-155891799:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.2927856445312	2	578.293288	1154.57202	0.26953	0.00015587	0.34702	0.00020068	0.61656	0.00035655	578.2931222769395	46.082	0.51953	46.082	45.805	46.324	0					40	18	3	0	0	0	0.051692	1	10344	10344		72.968	34.792	1	921360			8402	3657	4542	4542	11200	11200					0.0009193998362206912
EYSRFVNQI	9	Unmodified	_EYSRFVNQI_					0	0	0		ENST00000483237.1_1_1:155891178-155891799:-|nuORF;ENST00000478002.5_1_1:155885750-155895538:-|nuORF;nc|ENSG00000132680|Q7Z7F0-3|KHDC4;nc|ENSG00000132680|Q7Z7F0-2|KHDC4;ENSG00000132680|ENST00000368321|KHDC4	ENST00000483237.1_1_1:155891178-155891799:-|nuORF	ENST00000483237.1_1_1:155891178-155891799:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2936401367188	2	578.293288	1154.57202	0.16778	9.7028E-05	0.69473	0.00040175	0.86251	0.00049878	578.2936490699517	45.8	0.58937	45.86	45.619	46.209	0.059834					34	20	2	0	0	0	0.0056456	1	10265	10265		93.166	60.86	1	1108600			8403	3657	4542	4542	11201	11201					0.0009193998362206912
EYSRLLNAF	9	Unmodified	_EYSRLLNAF_					0	0	0		nc|ENSG00000120334|Q8N0S6-3|CENPL;ENST00000496683.5_1_1:173772617-173780437:-|nuORF;ENSG00000120334|ENST00000682279|CENPL;nc|ENSG00000120334|Q8N0S6-2|CENPL	nc|ENSG00000120334|Q8N0S6-3|CENPL	nc|ENSG00000120334|Q8N0S6-3|CENPL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2584228515625	2	556.790381	1111.56621	0.3693	0.00020562	0.63024	0.00035091	0.99954	0.00055654	556.7899882865634	58.425	0.27482	58.516	58.285	58.56	0.091305					13	9	2	0	0	0	0.1939	1	14149	14149		30.637	3.0077	1	136610			8404	2940	4543	4543	11202	11202					0.014888414719507637
EYSRSSVL	8	Unmodified	_EYSRSSVL_					0	0	0		ENST00000461888.5_1_1:160195382-160195415:-|nuORF	ENST00000461888.5_1_1:160195382-160195415:-|nuORF	ENST00000461888.5_1_1:160195382-160195415:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.7403564453125	2	470.740357	939.46616	0.20764	9.7744E-05	0.058605	2.7588E-05	0.26624	0.00012533	470.74033497954235	36.668	0.56881	36.668	36.416	36.985	0					29	19	2	0	0	0	0.41087	1	7493	7493		18.146	1.0598	1	260000			8405	10750	4544	4544	11203	11203					-0.005993958618546458
EYSRSSVL	8	Unmodified	_EYSRSSVL_					0	0	0		ENST00000461888.5_1_1:160195382-160195415:-|nuORF	ENST00000461888.5_1_1:160195382-160195415:-|nuORF	ENST00000461888.5_1_1:160195382-160195415:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.7400207519531	2	470.740357	939.46616	0.67761	0.00031898	-0.47621	-0.00022417	0.2014	9.4805E-05	470.73997132220876	36.551	0.64061	36.644	36.339	36.98	0.092838					36	22	3	0	0	0	0.40115	1	7455	7455		19.257	1.1106	1	284100			8406	10750	4544	4544	11204	11204					-0.005993958618546458
EYSSLFNDF	9	Unmodified	_EYSSLFNDF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2433471679688	2	561.242929	1120.47131	0.64468	0.00036182	-0.24853	-0.00013948	0.39615	0.00022234	561.2426840100638	77.391	0.60594	77.359	77.072	77.678	-0.031334					39	21	2	0	0	0	0.00051734	1	19956	19956		128.93	76.664	1	722030			8407	4063	4545	4545	11205	11205					-0.08411136789914053
EYSSLFNDF	9	Unmodified	_EYSSLFNDF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	561.242929	1120.47131	0.54147	0.00030389	-0.21293	-0.00011951	0.32854	0.00018439	561.2427846445534	77.363	0.73592	77.363	77.011	77.747	0	0.0051127	-3.673E-06	NaN	128.93	46	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	570370			8408	4063	4545	4545							-0.08411136789914053
EYSSLFNDF	9	Unmodified	_EYSSLFNDF_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.242929	1120.47131	0.57755	0.00032415	-0.14152	-7.943E-05	0.43603	0.00024472	561.242650077539	77.295	0.6781	77.351	77.06	77.738	0.05542	-0.0070089	7.6481E-05	NaN	128.93	44	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	546710			8409	4063	4545	4545							-0.08411136789914053
EYTAKIALL	9	Unmodified	_EYTAKIALL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.3002624511719	2	511.30005	1020.58555	0.53242	0.00027223	-0.33073	-0.0001691	0.2017	0.00010313	511.29986691214503	56.558	1.2836	56.558	56.212	57.495	0					142	47	5	0	0	0	0.0016361	2	13559	13559;13610		114.65	47.305	1	6557400			8410	1426	4546	4546	11206;11207	11206					0.07607797762852897
EYTAKIALL	9	Unmodified	_EYTAKIALL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.30010986328125	2	511.30005	1020.58555	0.61742	0.00031569	-0.27227	-0.00013921	0.34515	0.00017648	511.29988997401375	56.403	1.5094	56.481	56.17	57.68	0.078674					157	55	5	0	0	0	0.0016361	2	13529	13529;13582		114.65	47.305	1	6971100			8411	1426	4546	4546	11208;11209	11208					0.07607797762852897
EYTAKIALL	9	Unmodified	_EYTAKIALL_					0	0	0		ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.3003234863281	2	511.30005	1020.58555	0.88485	0.00045243	-0.39623	-0.00020259	0.48862	0.00024983	511.2997895157213	56.57	1.3655	56.551	56.239	57.604	-0.019077					130	49	4	0	0	0	0.0016361	2	13570	13570;13622		114.65	47.305	1	8026100			8412	1426	4546	4546	11210;11211	11210					0.07607797762852897
EYTDDIPLL	9	Unmodified	_EYTDDIPLL_					0	0	0		ENSG00000100647|ENST00000342745|SUSD6	ENSG00000100647|ENST00000342745|SUSD6	ENSG00000100647|ENST00000342745|SUSD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3303833007812	2	539.76878	1077.52301	0.92218	0.00049776	-0.22511	-0.00012151	0.69707	0.00037626	539.7683016948229	77.932	0.69721	77.932	77.604	78.302	0					48	25	3	0	0	0	0.15464	1	20120	20120		30.225	15.387	1	273640			8413	1621	4547	4547	11212	11212					-0.01265393095991385
EYTDDIPLL	9	Unmodified	_EYTDDIPLL_					0	0	0		ENSG00000100647|ENST00000342745|SUSD6	ENSG00000100647|ENST00000342745|SUSD6	ENSG00000100647|ENST00000342745|SUSD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3303833007812	2	539.76878	1077.52301	1.0701	0.00057763	-0.28198	-0.00015221	0.78816	0.00042542	539.7686590663833	77.923	0.41668	77.892	77.705	78.122	-0.030434					25	14	2	0	0	0	0.18943	1	20145	20145		30.225	14.378	1	223070			8414	1621	4547	4547	11213	11213					-0.01265393095991385
EYTDVYPEI	9	Unmodified	_EYTDVYPEI_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000102316|Q9UNF1-2|MAGED2	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.7586059570312	2	564.758412	1127.50227	0.38694	0.00021853	-0.22768	-0.00012858	0.15926	8.9944E-05	564.7582332728581	63.622	1.6618	63.622	63.093	64.755	0					186	60	5	0	0	0	4.0037E-07	4	15788	15694;15739;15788;15837		164.52	136.46	1	7754100			8415	7110;1763	4548	4548	11214;11215;11216;11217	11216					-0.056379834756626224
EYTDVYPEI	9	Unmodified	_EYTDVYPEI_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000102316|Q9UNF1-2|MAGED2	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.7586059570312	2	564.758412	1127.50227	0.50123	0.00028307	-0.38371	-0.0002167	0.11752	6.6372E-05	564.7581434099643	63.51	1.7344	63.606	63.066	64.801	0.095722					191	62	5	0	0	0	4.0037E-07	4	15756	15654;15705;15756;15801		164.52	122.42	1	8182800			8416	7110;1763	4548	4548	11218;11219;11220;11221	11220					-0.056379834756626224
EYTDVYPEI	9	Unmodified	_EYTDVYPEI_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000102316|Q9UNF1-2|MAGED2	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.7582397460938	2	564.758412	1127.50227	0.43051	0.00024313	-0.37763	-0.00021327	0.052884	2.9867E-05	564.7581509393546	63.618	1.6165	63.609	63.076	64.692	-0.0085564					186	58	5	0	0	0	4.0037E-07	4	15738	15690;15738;15786;15836		164.52	164.52	1	8020300			8417	7110;1763	4548	4548	11222;11223;11224;11225	11223					-0.056379834756626224
EYTFFSLGAY	10	Unmodified	_EYTFFSLGAY_					0	0	0			REV__ENSG00000181035|ENST00000318596|SLC25A42	REV__ENSG00000181035|ENST00000318596|SLC25A42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.8103637695312	2	599.276772	1196.53899	0.43459	0.00026044	-3.5562	-0.0021311	-3.1216	-0.0018707	599.7757242783429	67.134	0.39529	67.212	67.012	67.408	0.078041					17	13	2	0	0	0	0.31039	1	16857	16857		18.146	2.2992	1	144300	+		8418	18132	4549	4549	11226	11226					-0.051416868590649756
EYTLIDLP	8	Unmodified	_EYTLIDLP_					0	0	0			REV__ENST00000481972.5_1_3:58292052-58303220:+|nuORF	REV__ENST00000481972.5_1_3:58292052-58303220:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7542419433594	2	482.255308	962.496064	-0.059208	-2.8553E-05	2.0503	0.00098875	1.9911	0.0009602	482.2558570117088	14.398	0.52041	14.332	14.124	14.644	-0.066068					27	18	2	0	0	0	0.34272	1	709	709		7.9102	3.1541	1	48500	+		8419	21435	4550	4550	11227	11227					0.013315430834950348
EYTLMRATF	9	Oxidation (M)	_EYTLM(Oxidation (M))RATF_		EYTLM(1)RATF		EYTLM(130)RATF	0	0	1		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.2766723632812	2	574.276249	1146.53795	0.39198	0.0002251	0.4631	0.00026595	0.85508	0.00049105	574.2763324218562	46.801	1.15	46.801	46.458	47.608	0					79	40	4	0	0	0	0.00051734	2	10579	10579;10606		128.93	90.958	1	1609700			8420	7572	4551	4551	11228;11229	11228		834			-0.029462244996466325
EYTLMRATF	9	Oxidation (M)	_EYTLM(Oxidation (M))RATF_		EYTLM(1)RATF		EYTLM(140)RATF	0	0	1		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2765502929688	2	574.276249	1146.53795	0.50839	0.00029195	0.18811	0.00010803	0.69649	0.00039998	574.276298450736	46.585	1.1052	46.638	46.3	47.405	0.052574					75	40	3	0	0	0	0.00010125	3	10498	10498;10523;10569		140.63	94.612	1	1730300			8421	7572	4551	4551	11230;11231;11232	11230		834			-0.029462244996466325
EYTLMRATF	9	Oxidation (M)	_EYTLM(Oxidation (M))RATF_		EYTLM(1)RATF		EYTLM(130)RATF	0	0	1		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.2764892578125	2	574.276249	1146.53795	0.24833	0.00014261	0.29288	0.0001682	0.54122	0.00031081	574.2763623455361	46.632	1.0296	46.687	46.355	47.384	0.054375					68	36	3	0	0	0	0.00051734	2	10506	10506;10555		128.93	82.911	1	1648200			8422	7572	4551	4551	11233;11234	11233		834			-0.029462244996466325
EYTNIFLKF	9	Unmodified	_EYTNIFLKF_					0	0	0		nc|ENSG00000101981|P00740-2|F9;ENSG00000101981|ENST00000218099|F9	nc|ENSG00000101981|P00740-2|F9	nc|ENSG00000101981|P00740-2|F9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.1824951171875	2	587.810782	1173.60701	0.48892	0.00028739	0.1353	7.953E-05	0.62422	0.00036692	587.8107722012772	72.565	0.69987	72.536	72.254	72.954	-0.029305					59	24	3	0	0	0	0.075169	1	18502	18502		62.573	12.64	1	341500			8423	1734	4552	4552	11235	11235					0.02715182791530424
EYTNIFLKF	9	Unmodified	_EYTNIFLKF_					0	0	0		nc|ENSG00000101981|P00740-2|F9;ENSG00000101981|ENST00000218099|F9	nc|ENSG00000101981|P00740-2|F9	nc|ENSG00000101981|P00740-2|F9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	587.810782	1173.60701	0.45352	0.00026659	-0.043921	-2.5817E-05	0.4096	0.00024077	587.8105910227388	72.519	0.8916	72.519	71.989	72.881	0	0.0011306	-1.677E-05	NaN	62.573	51	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348980			8424	1734	4552	4552							0.02715182791530424
EYTRALFLL	9	Unmodified	_EYTRALFLL_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3189697265625	2	563.318774	1124.623	0.29656	0.00016706	-0.56467	-0.00031809	-0.2681	-0.00015103	563.3186055693232	70.669	2.585	70.669	70.35	72.935	0					212	93	6	0	0	0	0.0019475	4	17916	17869;17916;17968;18021		110.67	62.329	1	18686000			8425	3441	4553	4553	11236;11237;11238;11239	11237					0.06566889028476908
EYTRALFLL	9	Unmodified	_EYTRALFLL_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3189086914062	2	563.318774	1124.623	0.38224	0.00021532	-0.64657	-0.00036422	-0.26432	-0.0001489	563.3185612714792	70.669	2.5761	70.73	70.379	72.955	0.060783					225	93	5	0	0	0	0.0010463	5	17910	17859;17910;17960;18054;18236		122.18	73.833	1	19870000			8426	3441	4553	4553	11240;11241;11242;11243;11244	11241					0.06566889028476908
EYTRALFLL	9	Unmodified	_EYTRALFLL_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.31884765625	2	563.318774	1124.623	0.34648	0.00019518	-0.54122	-0.00030488	-0.19474	-0.0001097	563.3186168228666	70.747	1.6873	70.722	70.353	72.041	-0.024872					196	60	6	0	0	0	0.0010463	5	17921	17873;17921;17964;18015;18077		122.18	73.833	1	18137000			8427	3441	4553	4553	11245;11246;11247;11248;11249	11246					0.06566889028476908
EYTRYLFAL	9	Unmodified	_EYTRYLFAL_					0	0	0		FARP2|p.F319Ifs*37|1|0.05|ENSG00000006607|chr2:241434243-241434244|-/GATAGGGAATT|frameshift_variant;nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2	FARP2|p.F319Ifs*37|1|0.05|ENSG00000006607|chr2:241434243-241434244|-/GATAGGGAATT|frameshift_variant	FARP2|p.F319Ifs*37|1|0.05|ENSG00000006607|chr2:241434243-241434244|-/GATAGGGAATT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3071899414062	2	588.308406	1174.60226	0.26279	0.0001546	-1.0697	-0.00062934	-0.80696	-0.00047474	588.3076787824217	69.218	0.47851	69.218	69.006	69.485	0					43	16	3	0	0	0	0.047483	2	17475	17475;17530		53.833	26.949	1	675250			8428	363	4554	4554	11250;11251	11250					0.021942986488056704
EYTRYLFAL	9	Unmodified	_EYTRYLFAL_					0	0	0		FARP2|p.F319Ifs*37|1|0.05|ENSG00000006607|chr2:241434243-241434244|-/GATAGGGAATT|frameshift_variant;nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2	FARP2|p.F319Ifs*37|1|0.05|ENSG00000006607|chr2:241434243-241434244|-/GATAGGGAATT|frameshift_variant	FARP2|p.F319Ifs*37|1|0.05|ENSG00000006607|chr2:241434243-241434244|-/GATAGGGAATT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.3076782226562	2	588.308406	1174.60226	0.34018	0.00020013	-0.75377	-0.00044345	-0.41359	-0.00024332	588.3075832546349	69.175	0.42097	69.247	69.072	69.493	0.071938					37	14	3	0	0	0	0.05341	2	17460	17460;17513		51.63	27.609	1	557570			8429	363	4554	4554	11252;11253	11252					0.021942986488056704
EYTRYLFAL	9	Unmodified	_EYTRYLFAL_					0	0	0		FARP2|p.F319Ifs*37|1|0.05|ENSG00000006607|chr2:241434243-241434244|-/GATAGGGAATT|frameshift_variant;nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2	FARP2|p.F319Ifs*37|1|0.05|ENSG00000006607|chr2:241434243-241434244|-/GATAGGGAATT|frameshift_variant	FARP2|p.F319Ifs*37|1|0.05|ENSG00000006607|chr2:241434243-241434244|-/GATAGGGAATT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.3081665039062	2	588.308406	1174.60226	0.28917	0.00017012	-0.78461	-0.00046159	-0.49544	-0.00029147	588.3078359353023	69.285	0.46242	69.263	69	69.462	-0.022087					44	15	4	0	0	0	0.014888	1	17488	17488		71.922	42.841	1	682480			8430	363	4554	4554	11254	11254					0.021942986488056704
EYTSILHLF	9	Unmodified	_EYTSILHLF_					0	0	0		ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7955932617188	2	561.795132	1121.57571	0.047193	2.6513E-05	-0.25641	-0.00014405	-0.20921	-0.00011753	561.7947618301112	75.996	0.79107	75.996	75.739	76.53	0					41	28	2	0	0	0	0.00097449	1	19588	19588		123.1	83.139	1	426200			8431	8129	4555	4555	11255	11255					0.019786097574751693
EYTSILHLF	9	Unmodified	_EYTSILHLF_					0	0	0		ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2890014648438	2	561.795132	1121.57571	0.24955	0.0001402	-0.12966	-7.2842E-05	0.11989	6.7354E-05	561.7945750000438	76.035	0.95474	76.003	75.612	76.567	-0.031487					53	34	3	0	0	0	0.15464	1	19617	19617		38.151	12.752	1	565490			8432	8129	4555	4555	11256	11256					0.019786097574751693
EYTSILHLF	9	Unmodified	_EYTSILHLF_					0	0	0		ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.795132	1121.57571	0.27041	0.00015192	0.32011	0.00017984	0.59052	0.00033175	561.7952013834115	75.937	0.40708	75.991	75.782	76.189	0.053421	-0.0058683	0.00030856	NaN	123.1	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449940			8433	8129	4555	4555							0.019786097574751693
EYVDGGELF	9	Unmodified	_EYVDGGELF_					0	0	0		nc|ENSG00000145949|Q86YV6-2|MYLK4;ENSG00000145949|ENST00000274643|MYLK4;ENST00000564731.5_1_16:46761123-46772038:-|nuORF;nc|ENSG00000140795|Q32MK0-4|MYLK3;ENSG00000140795|ENST00000394809|MYLK3	nc|ENSG00000145949|Q86YV6-2|MYLK4	nc|ENSG00000145949|Q86YV6-2|MYLK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7745361328125	2	514.732197	1027.44984	0.44925	0.00023124	0.91821	0.00047263	1.3675	0.00070388	514.7327231914744	74.317	2.7418	74.317	73.307	76.049	0					120	97	2	0	0	0	0.21137	1	18820	18820		24.674	3.8027	1	350050			8434	4334	4556	4556	11257	11257					-0.06278521818626359
EYVDLLRVRL	10	Unmodified	_EYVDLLRVRL_					0	0	0			REV__ENST00000599418.1_1_19:39433250-39435758:-|nuORF	REV__ENST00000599418.1_1_19:39433250-39435758:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.37451171875	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.668	1	94.666	94.166	95.166	-0.0020142								0	0	0	0.38126	1	25261	25261		1.6526	0.17072	1		+		8435	19307	4557	4557	11258	11258					0.10829323385610223
EYVDLLRVRL	10	Unmodified	_EYVDLLRVRL_					0	0	0			REV__ENST00000599418.1_1_19:39433250-39435758:-|nuORF	REV__ENST00000599418.1_1_19:39433250-39435758:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3711547851562	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.637	1	97.63	97.13	98.13	-0.0068283								0	0	0	0.38126	1	26143	26143		1.6526	0	1		+		8436	19307	4557	4557	11259	11259					0.10829323385610223
EYVEFKYKI	9	Unmodified	_EYVEFKYKI_					0	0	0			REV__nc|ENSG00000228716|P00374-2|DHFR	REV__nc|ENSG00000228716|P00374-2|DHFR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.56927490234375	3	406.885018	1217.63323	-0.15017	-6.1102E-05	0.37922	0.0001543	0.22905	9.3197E-05	406.88494014965414	16.052	0.65239	15.99	15.73	16.382	-0.062534					46	22	3	0	0	0	0.26201	1	1244	1244		1.9064	0.1641	1	44255	+		8437	19127	4558	4558	11260	11260					0.03311451963031686
EYVEFKYKI	9	Unmodified	_EYVEFKYKI_					0	0	0			REV__nc|ENSG00000228716|P00374-2|DHFR	REV__nc|ENSG00000228716|P00374-2|DHFR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	406.885018	1217.63323	-0.24198	-9.8458E-05	1.1354	0.00046196	0.89338	0.0003635	406.885067571648	16.285	0.69948	16.171	15.748	16.448	-0.11434	0.083158	0.00067495	NaN	1.9064	54	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44807	+		8438	19127	4558	4558							0.03311451963031686
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.8275756835938	2	623.826963	1245.63937	0.64576	0.00040284	-0.2129	-0.00013281	0.43285	0.00027003	623.8267615067314	46.987	1.0683	46.987	46.703	47.771	0					90	37	4	0	0	0	0.0010659	6	10641	10594;10641;10686;10714;10756;10817		143.91	83.835	1	8003400			8439	2508	4559	4559	11261;11262;11263;11264;11265;11266	11262					0.02637970194564332
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.30859375	2	623.826963	1245.63937	0.1775	0.00011073	0.39394	0.00024575	0.57144	0.00035648	623.8273577712778	46.804	0.85104	46.857	46.554	47.405	0.052574					92	31	5	0	0	0	0.0018404	4	10585	10543;10585;10629;10637		132.38	82.825	1	6768600			8440	2508	4559	4559	11267;11268;11269;11270	11268					0.02637970194564332
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.8880615234375	3	416.220401	1245.63937	0.34882	0.00014519	-0.83235	-0.00034644	-0.48353	-0.00020125	416.22059473791586	46.794	1.4049	46.847	46.467	47.871	0.052574					177	51	5	0	0	0	0.19157	1	10559	10559		24.882	18.69	1	23190000			8441	2508	4559	4559	11271	11271					0.02637970194564332
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.827392578125	2	623.826963	1245.63937	0.51911	0.00032384	-0.00045232	-2.8217E-07	0.51866	0.00032355	623.8271663284719	46.853	1.0422	46.907	46.631	47.673	0.054375					103	37	4	0	0	0	0.0010659	3	10619	10619;10669;10679		143.91	92.279	1	6753600			8442	2508	4559	4559	11272;11273;11274	11272					0.02637970194564332
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	416.220401	1245.63937	0.28198	0.00011736	-0.86945	-0.00036188	-0.58747	-0.00024452	416.2205888813003	46.972	1.2311	46.972	46.618	47.849	0	0.067214	9.6261E-05	NaN	24.882	150	43	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25831000			8443	2508	4559	4559							0.02637970194564332
EYVEVLQEL	9	Unmodified	_EYVEVLQEL_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2908935546875	2	561.289879	1120.56521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.321	1	76.321	75.821	76.821	0								0	0	0	0.094536	1	19649	19649		47.594	3.6125	1				8444	8229;12909	4560	4560	11275	11275					0.009745823123921582
EYVEVLQEL	9	Unmodified	_EYVEVLQEL_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7937622070312	2	561.289879	1120.56521	0.19683	0.00011048	0.40658	0.00022821	0.6034	0.00033868	561.2899467800197	76.221	0.62696	76.275	75.992	76.619	0.053421					31	21	2	0	0	0	0.064268	2	19598	19598;19621		47.594	7.3552	1	306180			8445	8229;12909	4560	4560	11276;11277	11276					0.009745823123921582
EYVEVLQEL	9	Unmodified	_EYVEVLQEL_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2890014648438	2	561.289879	1120.56521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.257	1	76.225	75.725	76.725	-0.031487								0	0	0	0.094536	1	19617	19617		47.594	3.6125	1				8446	8229;12909	4560	4560	11278	11278					0.009745823123921582
EYVFSVSTF	9	Unmodified	_EYVFSVSTF_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2591552734375	2	539.758215	1077.50188	0.6919	0.00037346	-0.9726	-0.00052497	-0.28071	-0.00015151	540.258609389432	77.185	0.97108	77.185	76.879	77.85	0					109	35	4	0	0	0	0.20651	1	19926	19926		26.884	3.7352	1	1039700			8447	5669	4561	4561	11279	11279					-0.03377358404873121
EYVFSVSTF	9	Unmodified	_EYVFSVSTF_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7586059570312	2	539.758215	1077.50188	0.61618	0.00033259	-0.68907	-0.00037193	-0.072891	-3.9343E-05	540.2587643437488	77.183	1.3289	77.239	76.862	78.191	0.05542					123	47	4	0	0	0	0.1854	1	19876	19876		19.257	1.122	1	950030			8448	5669	4561	4561	11280	11280					-0.03377358404873121
EYVFSVSTF	9	Unmodified	_EYVFSVSTF_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.330322265625	2	539.758215	1077.50188	0.88821	0.00047942	-1.2469	-0.00067301	-0.35866	-0.00019359	540.2585522258736	77.243	1.0519	77.212	76.93	77.982	-0.031334					110	37	4	0	0	0	0.20651	1	19955	19955		20.454	2.3186	1	960900			8449	5669	4561	4561	11281	11281					-0.03377358404873121
EYVGKVFRV	9	Unmodified	_EYVGKVFRV_					0	0	0		nc|ENSG00000179776|P33151-2|CDH5;ENSG00000179776|ENST00000341529|CDH5	nc|ENSG00000179776|P33151-2|CDH5	nc|ENSG00000179776|P33151-2|CDH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2903442382812	2	548.811116	1095.60768	0.26723	0.00014666	-0.38005	-0.00020858	-0.11283	-6.192E-05	548.8107971273918	40.965	0.72013	40.965	40.662	41.382	0					44	26	2	0	0	0	0.20167	1	8873	8873		29.082	2.7403	1	234020			8450	7143	4562	4562	11282	11282					0.06370022231271832
EYVGKVFRV	9	Unmodified	_EYVGKVFRV_					0	0	0		nc|ENSG00000179776|P33151-2|CDH5;ENSG00000179776|ENST00000341529|CDH5	nc|ENSG00000179776|P33151-2|CDH5	nc|ENSG00000179776|P33151-2|CDH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2905883789062	2	548.811116	1095.60768	0.41948	0.00023022	-0.41353	-0.00022695	0.0059504	3.2656E-06	548.8108122500463	40.546	0.6161	40.646	40.479	41.095	0.099403					40	22	2	0	0	0	0.17242	1	8721	8721		36.127	22.619	1	276120			8451	7143	4562	4562	11283	11283					0.06370022231271832
EYVKFIGNF	9	Unmodified	_EYVKFIGNF_					0	0	0		ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2694702148438	2	558.78985	1115.56515	0.34942	0.00019525	0.099681	5.5701E-05	0.4491	0.00025095	558.7905485505605	62.706	1.3045	62.706	62.138	63.443	0					158	48	6	0	0	0	0.10135	1	15516	15516		52.268	6.2474	1	2270500			8452	3820	4563	4563	11284	11284					0.011986271030536955
EYVKFIGNF	9	Unmodified	_EYVKFIGNF_					0	0	0		ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2692260742188	2	558.78985	1115.56515	0.4117	0.00023005	0.052615	2.9401E-05	0.46432	0.00025945	558.7903971135819	62.585	1.5331	62.682	62.149	63.683	0.096985					159	55	6	0	0	0	0.082808	1	15474	15474		58.679	16.584	1	2348300			8453	3820	4563	4563	11285	11285					0.011986271030536955
EYVKFIGNF	9	Unmodified	_EYVKFIGNF_					0	0	0		ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.26953125	2	558.78985	1115.56515	0.26582	0.00014854	0.37714	0.00021074	0.64296	0.00035928	558.7905426028195	62.7	1.8213	62.692	62.142	63.963	-0.0085526					177	66	6	0	0	0	0.082808	1	15507	15507		58.679	18.721	1	2520100			8454	3820	4563	4563	11286	11286					0.011986271030536955
EYVKFLHKF	9	Unmodified	_EYVKFLHKF_					0	0	0		nc|ENSG00000081665|Q5JVG8-2|ZNF506;ENSG00000081665|ENST00000540806|ZNF506	nc|ENSG00000081665|Q5JVG8-2|ZNF506	nc|ENSG00000081665|Q5JVG8-2|ZNF506	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.9291687011719	3	404.225486	1209.65463	-0.25226	-0.00010197	0.40767	0.00016479	0.15541	6.282E-05	404.22561463265913	42.027	0.90926	42.027	41.851	42.76	0					60	32	4	0	0	0	0.14961	1	9101	9101		20.581	16.052	1	1395500			8455	1184	4564	4564	11287	11287					0.058188817823975114
EYVKFLHKF	9	Unmodified	_EYVKFLHKF_					0	0	0		nc|ENSG00000081665|Q5JVG8-2|ZNF506;ENSG00000081665|ENST00000540806|ZNF506	nc|ENSG00000081665|Q5JVG8-2|ZNF506	nc|ENSG00000081665|Q5JVG8-2|ZNF506	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2637023925781	3	404.225486	1209.65463	-0.16522	-6.6787E-05	0.50855	0.00020557	0.34333	0.00013878	404.2256630206276	41.665	0.7962	41.755	41.587	42.383	0.090252					38	32	2	0	0	0	0.17242	1	8984	8984		27.223	20.122	1	1597500			8456	1184	4564	4564	11288	11288					0.058188817823975114
EYVKTQLQL	9	Unmodified	_EYVKTQLQL_					0	0	0		ENST00000470922.5_1_22:19165453-19166237:-|nuORF;ENSG00000100075|ENST00000215882|SLC25A1	ENST00000470922.5_1_22:19165453-19166237:-|nuORF	ENST00000470922.5_1_22:19165453-19166237:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2848510742188	2	561.313689	1120.61282	0.61142	0.0003432	0.024944	1.4001E-05	0.63637	0.0003572	561.3138284187471	55.026	0.61847	55.026	54.602	55.221	0					42	22	3	0	0	0	0.22674	1	13043	13043		22.736	9.6938	1	795830			8457	1527	4565	4565	11289	11289					0.05734281303261923
EYVKTQLQL	9	Unmodified	_EYVKTQLQL_					0	0	0		ENST00000470922.5_1_22:19165453-19166237:-|nuORF;ENSG00000100075|ENST00000215882|SLC25A1	ENST00000470922.5_1_22:19165453-19166237:-|nuORF	ENST00000470922.5_1_22:19165453-19166237:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	561.313689	1120.61282	0.42739	0.0002399	-0.13993	-7.8543E-05	0.28746	0.00016136	561.3136720704831	55.199	0.53317	55.18	55.003	55.536	-0.019077	0.11593	-8.1317E-05	NaN	29.082	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	645670			8458	1527	4565	4565							0.05734281303261923
EYVLAEYVE	9	Unmodified	_EYVLAEYVE_					0	0	0			REV__nc|ENSG00000117868|A0FGR8-4|ESYT2	REV__nc|ENSG00000117868|A0FGR8-4|ESYT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.30322265625	2	557.76878	1113.52301	0.49932	0.00027851	0.24502	0.00013667	0.74434	0.00041517	558.2707575712171	85.943	0.46168	85.943	85.714	86.175	0					22	16	2	0	0	0	0.1854	1	22605	22605		32.305	10.559	1	142300	+		8459	14993	4566	4566	11290	11290					-0.029213930960168
EYVPEIVNF	9	Unmodified	_EYVPEIVNF_					0	0	0		ENST00000526890.5_1_11:3050224-3063461:-|nuORF;nc|ENSG00000110619|P49589-2|CARS1;nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1	ENST00000526890.5_1_11:3050224-3063461:-|nuORF	ENST00000526890.5_1_11:3050224-3063461:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2792358398438	2	555.279315	1108.54408	0.58953	0.00032735	-0.34167	-0.00018972	0.24786	0.00013763	555.279174269873	77.412	1.077	77.467	77.06	78.137	0.055412					86	38	3	0	0	0	1.8889E-06	1	19961	19961		155.03	115.07	1	1040300			8460	2317	4567	4567	11291	11291					-0.005853829964962642
EYVPEIVNF	9	Unmodified	_EYVPEIVNF_					0	0	0		ENST00000526890.5_1_11:3050224-3063461:-|nuORF;nc|ENSG00000110619|P49589-2|CARS1;nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1	ENST00000526890.5_1_11:3050224-3063461:-|nuORF	ENST00000526890.5_1_11:3050224-3063461:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.279541015625	2	555.279315	1108.54408	0.66859	0.00037126	-0.28827	-0.00016007	0.38033	0.00021119	555.2791396919456	77.491	1.281	77.46	77.019	78.3	-0.031334					90	46	3	0	0	0	4.6368E-06	1	20004	20004		152.41	112.45	1	1102600			8461	2317	4567	4567	11292	11292					-0.005853829964962642
EYVPTRYPSVL	11	Unmodified	_EYVPTRYPSVL_					0	0	0			REV__ENST00000551454.1_1_10:94449743-94451337:+|nuORF	REV__ENST00000551454.1_1_10:94449743-94451337:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2456970214844	3	441.902961	1322.68705	0.15094	6.6701E-05	-0.98398	-0.00043482	-0.83304	-0.00036812	441.90230294312664	24.844	0.60585	24.844	24.605	25.21	0					33	20	3	0	0	0	0.33287	1	3822	3822		2.8433	0	1	93688	+		8462	16598	4568	4568	11293	11293					0.03861624394744467
EYVRAVYRM	9	Oxidation (M)	_EYVRAVYRM(Oxidation (M))_		EYVRAVYRM(1)		EYVRAVYRM(50)	0	0	1		nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENSG00000145476|ENST00000378802|CYP4V2;ENST00000507209.5_1_4:187118658-187122526:+|nuORF	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.802978515625	2	601.802965	1201.59138	0.24506	0.00014747	0.2435	0.00014654	0.48856	0.00029401	601.8028095415981	28.175	0.63026	28.171	27.912	28.542	-0.0042572					57	22	4	0	0	0	0.058995	1	4896	4896		49.554	31.408	1	459570			8463	4653	4569	4569	11294	11294		585			-0.001354269971670874
EYVRDLPVL	9	Unmodified	_EYVRDLPVL_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.7835693359375	2	552.308406	1102.60226	0.48863	0.00026988	-1.7861	-0.00098646	-1.2974	-0.00071658	552.3070954200432	58.787	0.62123	58.772	58.523	59.144	-0.014267					47	21	3	0	0	0	0.1939	1	14292	14292		30.637	20.563	1	562370			8464	8109	4570	4570	11295	11295					0.05506298648788288
EYVSQHLVF	9	Unmodified	_EYVSQHLVF_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2853393554688	2	561.284931	1120.55531	0.54972	0.00030855	-0.68177	-0.00038267	-0.13205	-7.4119E-05	561.2846731751507	54.315	1.8463	54.315	53.974	55.82	0					192	67	5	0	0	0	4.3828E-07	4	12889	12843;12889;12931;12976		163.04	88.613	1	22627000			8465	3374	4571	4571	11296;11297;11298;11299	11297					-0.00014560902332050318
EYVSQHLVF	9	Unmodified	_EYVSQHLVF_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2852783203125	2	561.284931	1120.55531	0.57446	0.00032244	-0.78143	-0.0004386	-0.20696	-0.00011617	561.284613192287	54.22	1.8857	54.283	53.987	55.873	0.063206					206	70	5	0	0	0	6.1526E-05	5	12861	12819;12861;12905;12955;13006		147.06	85.95	1	23246000			8466	3374	4571	4571	11300;11301;11302;11303;11304	11301					-0.00014560902332050318
EYVSQHLVF	9	Unmodified	_EYVSQHLVF_					0	0	0		nc|ENSG00000128578|Q9ULQ0-2|STRIP2;ENSG00000128578|ENST00000249344|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2853393554688	2	561.284931	1120.55531	0.49302	0.00027673	-0.44356	-0.00024896	0.049469	2.7766E-05	561.284829331455	54.489	1.8515	54.473	54.143	55.994	-0.015923					178	67	5	0	0	0	6.1526E-05	3	12937	12888;12937;12983		147.06	90.882	1	24200000			8467	3374	4571	4571	11305;11306;11307	11306					-0.00014560902332050318
EYVSSFGAKF	10	Unmodified	_EYVSSFGAKF_					0	0	0		ENSG00000074966|ENST00000264316|TXK	ENSG00000074966|ENST00000264316|TXK	ENSG00000074966|ENST00000264316|TXK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.777099609375	2	567.776939	1133.53933	0.17551	9.9652E-05	0.38708	0.00021977	0.56259	0.00031943	567.7772271882628	17.728	1.0619	17.667	17.051	18.113	-0.060429					69	37	2	0	0	0	0.41168	1	1572	1572		1.3295	0.63916	1	100230			8468	1034	4572	4572	11308	11308					-0.02210267139230382
EYWFVLMN	8	Unmodified	_EYWFVLMN_					0	0	0		PTPRF|p.S1074W|1|0.24|ENSG00000142949|chr1:43605275-43605275|C/G|missense_variant	PTPRF|p.S1074W|1|0.24|ENSG00000142949|chr1:43605275-43605275|C/G|missense_variant	PTPRF|p.S1074W|1|0.24|ENSG00000142949|chr1:43605275-43605275|C/G|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2598266601562	2	551.257328	1100.5001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.614	1	41.705	41.205	42.205	0.090252								0	0	0	0.33941	1	8987	8987		19.439	0.18201	1				8469	13055	4573	4573	11309	11309					-0.04612690694466437
EYYDIKLNE	9	Unmodified	_EYYDIKLNE_					0	0	0		nc|ENSG00000122550|Q8IXQ5-5|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	nc|ENSG00000122550|Q8IXQ5-5|KLHL7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.7854614257812	2	593.784961	1185.55537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.012	1	83.012	82.512	83.512	0								0	0	0	0.25631	1	21698	21698		4.3292	0.38484	1				8470	3051	4574	4574	11310	11310					-0.029986056930056293
EYYDKHFTEF	10	Unmodified	_EYYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.2039794921875	3	460.203187	1377.58773	0.26096	0.0001201	0.022523	1.0365E-05	0.28348	0.00013046	460.20367921810686	46.802	2.1197	46.802	46.487	48.606	0					237	75	6	0	0	0	0.050002	8	10569	10519;10569;10613;10659;10712;10763;10815;10870		59.013	44.842	1	77327000			8471	2575	4575	4575	11311;11312;11313;11314;11315;11316;11317;11318	11312					-0.08595818290018542
EYYDKHFTEF	10	Unmodified	_EYYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.20269775390625	3	460.203187	1377.58773	0.231	0.00010631	-0.29417	-0.00013538	-0.063169	-2.9071E-05	460.20363990274944	46.541	1.6118	46.593	46.229	47.841	0.052574					240	59	6	0	0	0	0.026238	7	10440	10440;10485;10536;10587;10636;10686;10736		64.927	52.071	1	67750000			8472	2575	4575	4575	11319;11320;11321;11322;11323;11324;11325	11319					-0.08595818290018542
EYYDKHFTEF	10	Unmodified	_EYYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.20379638671875	3	460.203187	1377.58773	0.16	7.3631E-05	-0.11705	-5.3867E-05	0.042947	1.9764E-05	460.20372465284373	46.598	1.6689	46.652	46.269	47.937	0.054371					237	60	6	0	0	0	0.067194	7	10486	10439;10486;10536;10587;10635;10738;10788		55.249	42.376	1	75126000			8473	2575	4575	4575	11326;11327;11328;11329;11330;11331;11332	11327					-0.08595818290018542
EYYLIPFLI	9	Unmodified	_EYYLIPFLI_					0	0	0		nc|ENSG00000082996|O43567-2|RNF13;ENSG00000082996|ENST00000392894|RNF13	nc|ENSG00000082996|O43567-2|RNF13	nc|ENSG00000082996|O43567-2|RNF13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813232421875	2	585.825901	1169.63725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.537	1	95.537	95.037	96.037	0								0	0	0	0.24311	1	25503	25503		8.5933	1.8701	1				8474	1212	4576	4576	11333	11333					0.05921541456768864
EYYLIPFLI	9	Unmodified	_EYYLIPFLI_					0	0	0		nc|ENSG00000082996|O43567-2|RNF13;ENSG00000082996|ENST00000392894|RNF13	nc|ENSG00000082996|O43567-2|RNF13	nc|ENSG00000082996|O43567-2|RNF13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135375976562	2	585.825901	1169.63725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.047	1	95.129	94.629	95.629	0.082779								0	0	0	0.24311	1	25374	25374		8.5933	1.8701	1				8475	1212	4576	4576	11334	11334					0.05921541456768864
EYYLIPFLI	9	Unmodified	_EYYLIPFLI_					0	0	0		nc|ENSG00000082996|O43567-2|RNF13;ENSG00000082996|ENST00000392894|RNF13	nc|ENSG00000082996|O43567-2|RNF13	nc|ENSG00000082996|O43567-2|RNF13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8135986328125	2	585.825901	1169.63725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.059	1	95.057	94.557	95.557	-0.0020142								0	0	0	0.24311	1	25382	25382		8.5933	1.8701	1				8476	1212	4576	4576	11335	11335					0.05921541456768864
EYYRGFTLF	9	Unmodified	_EYYRGFTLF_					0	0	0		ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.8194580078125	2	598.292756	1194.57096	0.29567	0.00017689	0.65498	0.00039187	0.95064	0.00056876	598.2930698700276	69.474	1.1259	69.474	69.147	70.273	0					78	40	4	0	0	0	0.10058	1	17519	17519		53.833	28.842	1	851280			8477	7117	4577	4577	11336	11336					-0.018542743852776766
EYYRGFTLF	9	Unmodified	_EYYRGFTLF_					0	0	0		ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.8193359375	2	598.292756	1194.57096	0.40304	0.00024114	0.72499	0.00043375	1.128	0.00067489	598.2930628071514	69.447	1.1252	69.513	69.232	70.357	0.066048					70	39	3	0	0	0	0.08298	1	17514	17514		60.074	35.083	1	772770			8478	7117	4577	4577	11337	11337					-0.018542743852776766
EYYRGFTLF	9	Unmodified	_EYYRGFTLF_					0	0	0		ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.2928466796875	2	598.292756	1194.57096	0.28597	0.00017109	0.65964	0.00039466	0.94562	0.00056576	598.292988954661	69.516	1.0106	69.494	69.153	70.163	-0.022087					87	36	4	0	0	0	0.04299	1	17541	17541		55.503	23.465	1	851470			8479	7117	4577	4577	11338	11338					-0.018542743852776766
EYYVNQFRSL	10	Unmodified	_EYYVNQFRSL_					0	0	0		REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant;REPS2|p.D555Gfs*14|1|0.67|ENSG00000169891|chrX:17133904-17133905|-/A|frameshift_variant;nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.6083679199219	3	440.21906	1317.63535	0.31116	0.00013698	-0.41749	-0.00018379	-0.10633	-4.6811E-05	440.55317210109393	85.83	1.0158	85.83	85.31	86.326	0					57	38	2	0	0	0	0.32143	1	22612	22612		0.56317	0	1	111350			8480	6396	4578	4578	11339	11339					-0.010761192991367352
FAAVSCGLNK	10	Unmodified	_FAAVSCGLNK_					0	0	0		nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2729187011719	2	505.260402	1008.50625	0.10493	5.3018E-05	-1.991	-0.001006	-1.8861	-0.00095296	505.76098464064415	40.852	0.37457	40.951	40.806	41.18	0.099403					21	13	2	0	0	0	0.2811	1	8778	8778		22.736	1.1993	1	166140			8481	5147	4579	4579	11340	11340					0.0023382753705618597
FACYKNAYF	9	Unmodified	_FACYKNAYF_					0	0	0		ENST00000492816.6_1_2:216245477-216245942:-|nuORF	ENST00000492816.6_1_2:216245477-216245942:-|nuORF	ENST00000492816.6_1_2:216245477-216245942:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.2171630859375	2	563.754953	1125.49535	0.51284	0.00028912	1.3676	0.00077099	1.8804	0.0010601	564.2567667679613	83.416	1.8754	83.416	82.262	84.137	0					92	72	2	0	0	0	0.25526	1	21758	21758		7.9102	0	1	378590			8482	11194	4580	4580	11341	11341					-0.06237574837223292
FADNQPCIN	9	Unmodified	_FADNQPCIN_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2548522949219	2	511.224017	1020.43348	0.52043	0.00026606	-0.72616	-0.00037123	-0.20573	-0.00010517	511.2233943089324	66.216	0.11402	66.216	66.152	66.266	0					5	3	2	0	0	0	0.24688	1	16562	16562		14.838	1.3304	1	58518			8483	1405	4581	4581	11342	11342					-0.07591926256372972
FAEDGARTV	9	Unmodified	_FAEDGARTV_					0	0	0		ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.23822021484375	2	483.237981	964.461409	0.041274	1.9945E-05	0.27444	0.00013262	0.31571	0.00015256	483.23809207047	27.377	0.61726	27.377	27.172	27.789	0					42	20	3	0	0	0	0.053988	1	4658	4658		51.415	15.288	1	292340			8484	5293	4582	4582	11343	11343					-0.022242800046115008
FAEDGARTV	9	Unmodified	_FAEDGARTV_					0	0	0		ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.23797607421875	2	483.237981	964.461409	0.013585	6.5647E-06	0.16822	8.129E-05	0.1818	8.7855E-05	483.2380508855326	27.361	0.76485	27.34	27.1	27.865	-0.021412					50	26	3	0	0	0	0.048871	1	4648	4648		53.317	17.19	1	311250			8485	5293	4582	4582	11344	11344					-0.022242800046115008
FAEDGARTV	9	Unmodified	_FAEDGARTV_					0	0	0		ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2379455566406	2	483.237981	964.461409	0.076254	3.6849E-05	0.31887	0.00015409	0.39513	0.00019094	483.238106920051	27.361	0.65089	27.35	27.101	27.752	-0.011562					43	22	3	0	0	0	0.027957	1	4636	4636		61.09	24.963	1	309940			8486	5293	4582	4582	11345	11345					-0.022242800046115008
FAELESPTL	9	Unmodified	_FAELESPTL_					0	0	0			REV__ENSG00000105131|ENST00000221730|EPHX3	REV__ENSG00000105131|ENST00000221730|EPHX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2900085449219	2	503.758215	1005.50188	0.65814	0.00033154	2.0242	0.0010197	2.6823	0.0013512	503.75948852000096	58.547	0.47447	58.532	58.331	58.806	-0.014267					25	16	2	0	0	0	0.24913	1	14249	14249		7.9102	1.5561	1	345560	+		8487	14439	4583	4583	11346	11346					-0.0006535840486776578
FAELFSYV	8	Unmodified	_FAELFSYV_					0	0	0		ENST00000431297.1_1_21:15134673-15136650:+|nuORF;ENSG00000141965|ENST00000269856|FEM1A	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7380676269531	2	488.244744	974.474934	0.021878	1.0682E-05	-3.8079	-0.0018592	-3.786	-0.0018485	488.23982006143945	25.744	0.87973	25.705	25.298	26.178	-0.038671					50	30	3	0	0	0	0.34046	1	4137	4137		14.582	6.6715	1	229070			8488	4415	4584	4584	11347	11347					-0.013324222253913831
FAERYAPSL	9	Unmodified	_FAERYAPSL_					0	0	0			REV__ENSG00000100744|ENST00000555181|GSKIP	REV__ENSG00000100744|ENST00000555181|GSKIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8086547851562	2	527.271824	1052.5291	0.13566	7.153E-05	-1.623	-0.00085576	-1.4873	-0.00078423	527.27099581397	28.099	0.35899	28.1	27.992	28.351	0.0004673					18	12	2	0	0	0	0.2322	1	4833	4833		14.838	4.0143	1	80573	+		8489	14228	4585	4585	11348	11348					0.004931699261760514
FAFGEPREL	9	Unmodified	_FAFGEPREL_					0	0	0		nc|ENSG00000155495|O60732-2|MAGEC1;ENSG00000155495|ENST00000285879|MAGEC1	nc|ENSG00000155495|O60732-2|MAGEC1	nc|ENSG00000155495|O60732-2|MAGEC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7855834960938	2	533.271824	1064.5291	0.74986	0.00039988	-0.063785	-3.4015E-05	0.68607	0.00036586	533.2717378638841	47.998	0.73285	47.998	47.849	48.582	0					53	25	3	0	0	0	0.25989	1	11066	11066		14.838	0.93222	1	1562000			8490	5177	4586	4586	11349	11349					-0.0005883007379452465
FAFLTLLPS	9	Unmodified	_FAFLTLLPS_					0	0	0		nc|ENSG00000151490|Q16827-3|PTPRO;ENSG00000151490|ENST00000281171|PTPRO	nc|ENSG00000151490|Q16827-3|PTPRO	nc|ENSG00000151490|Q16827-3|PTPRO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.30572509765625	2	504.791861	1007.56917	0.7097	0.00035825	2.4192	0.0012212	3.1289	0.0015795	505.29361342530376	37.246	0.89201	37.246	36.875	37.767	0					90	31	4	0	0	0	0.20344	2	7698	7698;7744		23.148	5.0134	1	1372700			8491	4965	4587	4587	11350;11351	11350					0.06568716596768809
FAFRYVTTI	9	Unmodified	_FAFRYVTTI_					0	0	0		ENSG00000187325|ENST00000341864|TAF9B;ENSG00000273841|ENST00000217893|TAF9;ENST00000587506.1_1_19:30528395-30528668:+|nuORF;ENST00000480681.1_1_X:77393446-77395117:-|nuORF	ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2816162109375	2	559.305667	1116.59678	0.51368	0.0002873	-1.7823	-0.00099683	-1.2686	-0.00070952	559.3046751677562	64.03	0.64709	64.03	63.695	64.342	0					74	23	4	0	0	0	0.075356	1	15890	15890		55.503	38.39	1	1146500			8492	7676	4588	4588	11352	11352					0.04314619856995705
FAFRYVTTI	9	Unmodified	_FAFRYVTTI_					0	0	0		ENSG00000187325|ENST00000341864|TAF9B;ENSG00000273841|ENST00000217893|TAF9;ENST00000587506.1_1_19:30528395-30528668:+|nuORF;ENST00000480681.1_1_X:77393446-77395117:-|nuORF	ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.3056640625	2	559.305667	1116.59678	0.48499	0.00027126	-1.2678	-0.00070907	-0.78277	-0.00043781	559.3050276476748	63.915	0.88229	64.007	63.647	64.53	0.09288					68	31	3	0	0	0	0.086462	1	15883	15883		40.239	23.297	1	1235300			8493	7676	4588	4588	11353	11353					0.04314619856995705
FAFRYVTTI	9	Unmodified	_FAFRYVTTI_					0	0	0		ENSG00000187325|ENST00000341864|TAF9B;ENSG00000273841|ENST00000217893|TAF9;ENST00000587506.1_1_19:30528395-30528668:+|nuORF;ENST00000480681.1_1_X:77393446-77395117:-|nuORF	ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2813110351562	2	559.305667	1116.59678	0.4794	0.00026813	-1.4713	-0.00082293	-0.99194	-0.0005548	559.3049259297779	64.015	0.92239	64.005	63.658	64.58	-0.0095291					79	33	4	0	0	0	0.051692	1	15871	15871		63.961	41.302	1	1374400			8494	7676	4588	4588	11354	11354					0.04314619856995705
FAFYFGESF	9	Unmodified	_FAFYFGESF_					0	0	0			REV__nc|ENSG00000095981|Q96T55-5|KCNK16	REV__nc|ENSG00000095981|Q96T55-5|KCNK16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7638549804688	2	557.74765	1113.48075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.268	1	72.241	71.741	72.741	-0.027275								0	0	0	0.19804	1	18400	18400		23.148	5.0021	1		+		8495	14110	4589	4589	11355	11355					-0.0714532371371206
FAGPPNYPFS	10	Unmodified	_FAGPPNYPFS_					0	0	0		ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF	ENSG00000187134|ENST00000380872|AKR1C1	ENSG00000187134|ENST00000380872|AKR1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.758544921875	2	548.758549	1095.50255	0.34206	0.00018771	0.16986	9.3211E-05	0.51192	0.00028092	548.7583522359412	23.364	0.95473	23.276	22.909	23.864	-0.087608					102	33	4	0	0	0	0.41085	1	3417	3417		1.4819	0.68827	1	500790			8496	7666	4590	4590	11356	11356					-0.041385189651464316
FAGSVEAGAPV	11	Unmodified	_FAGSVEAGAPV_					0	0	0			REV__ENST00000518820.1_1_8:143621151-143621361:+|nuORF	REV__ENST00000518820.1_1_8:143621151-143621361:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2900085449219	2	502.756007	1003.49746	0.70337	0.00035363	-0.93201	-0.00046858	-0.22864	-0.00011495	503.2554380006346	58.444	0.66278	58.429	58.169	58.831	-0.014271					28	23	2	0	0	0	0.32505	1	14249	14249		10.074	2.1638	1	379480	+		8497	21866	4591	4591	11357	11357					-0.004148228277585986
FAGVIHWIS	9	Unmodified	_FAGVIHWIS_					0	0	0		ENST00000561302.5_1_15:76430142-76521275:+|nuORF;nc|ENSG00000169758|Q2M3C6-2|TMEM266;ENSG00000169758|ENST00000388942|TMEM266	ENST00000561302.5_1_15:76430142-76521275:+|nuORF	ENST00000561302.5_1_15:76430142-76521275:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2915649414062	2	515.279452	1028.54435	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.365	1	38.463	37.963	38.963	0.097527								0	0	0	0.21726	1	7984	7984		16.942	5.302	1				8498	6384	4592	4592	11358	11358					0.03122081514038655
FAIADAAYK	9	Unmodified	_FAIADAAYK_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2662048339844	2	485.255643	968.496732	0.26843	0.00013026	-1.8459	-0.00089575	-1.5775	-0.00076549	485.254761418355	37.655	0.81752	37.753	37.477	38.294	0.097527					48	29	2	0	0	0	0.28674	1	7697	7697		10.824	0.75	1	350980			8499	6939	4593	4593	11359	11359					0.011223825231695628
FAIVWVFIR	9	Unmodified	_FAIVWVFIR_					0	0	0			REV__nc|ENSG00000133105|Q8WXD0-2|RXFP2	REV__nc|ENSG00000133105|Q8WXD0-2|RXFP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.843505859375	2	575.84222	1149.66989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112	1	112.01	111.51	112.51	0.0131								0	0	0	0.264	1	29157	29157		1.8442	0	1		+		8500	15606	4594	4594	11360	11360					0.10103793370262792
FAKLFPSDV	9	Unmodified	_FAKLFPSDV_					0	0	0			REV__ENSG00000188732|ENST00000344962|FAM221A	REV__ENSG00000188732|ENST00000344962|FAM221A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2855834960938	2	512.279118	1022.54368	0.28435	0.00014567	-0.87918	-0.00045038	-0.59483	-0.00030472	512.2784817569429	51.815	0.68399	51.862	51.622	52.306	0.047329					17	9	2	0	0	0	0.18943	1	12172	12172		30.225	8.4782	1	474050	+		8501	18567	4595	4595	11361	11361					0.03331242074318652
FAKLYQTVP	9	Unmodified	_FAKLYQTVP_					0	0	0			REV__ENSG00000079557|ENST00000226355|AFM	REV__ENSG00000079557|ENST00000226355|AFM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7879638671875	2	533.800217	1065.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.014	1	50.014	49.514	50.514	0								0	0	0	0.22666	1	11567	11567		13.906	0	1		+		8502	13872	4596	4596	11362	11362					0.05571217482724933
FAKWFLQIT	9	Unmodified	_FAKWFLQIT_					0	0	0			REV__nc|ENSG00000138642|Q8IVU3-2|HERC6	REV__nc|ENSG00000138642|Q8IVU3-2|HERC6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3348388671875	2	577.32386	1152.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.252	1	64.345	63.845	64.845	0.09288								0	0	0	0.14393	1	15954	15954		36.127	5.4905	1		+		8503	15938	4597	4597	11363	11363					0.06295496753705265
FALELSKKL	9	Unmodified	_FALELSKKL_					0	0	0		ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7366943359375	2	524.823692	1047.63283	0.54187	0.00028439	-0.3283	-0.0001723	0.21357	0.00011209	524.8234881921817	58.145	0.25129	58.145	58.018	58.269	0					11	8	2	0	0	0	0.24311	1	14074	14074		16.942	2.104	1	98534			8504	8549	4598	4598	11364	11364					0.11092077033868009
FALFWSLI	8	Unmodified	_FALFWSLI_					0	0	0			REV__ENST00000443016.1_1_10:11607160-11607337:-|nuORF	REV__ENST00000443016.1_1_10:11607160-11607337:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.774658203125	2	498.781296	995.54804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.458	1	74.458	73.958	74.958	0								0	0	0	0.31676	1	19081	19081		26.341	11.76	1		+		8505	21060	4599	4599	11365	11365					0.050087512879144924
FALFWSLI	8	Unmodified	_FALFWSLI_					0	0	0			REV__ENST00000443016.1_1_10:11607160-11607337:-|nuORF	REV__ENST00000443016.1_1_10:11607160-11607337:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.32598876953125	2	498.781296	995.54804	0.26577	0.00013256	0.84221	0.00042008	1.108	0.00055264	498.7816827394106	74.058	1.7611	74.058	72.613	74.374	0					98	61	2	0	0	0	0.34092	1	19027	19027		13.508	13.508	1	762850	+		8506	21060	4599	4599	11366	11366					0.050087512879144924
FALPKRNLV	9	Unmodified	_FALPKRNLV_					0	0	0		ENST00000374279.3_1_9:114697220-114697295:+|nuORF	ENST00000374279.3_1_9:114697220-114697295:+|nuORF	ENST00000374279.3_1_9:114697220-114697295:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.32958984375	2	529.329476	1056.6444	0.55212	0.00029225	-0.082362	-4.3597E-05	0.46976	0.00024866	529.3294098905644	43.117	0.53954	43.194	42.943	43.483	0.077515					50	19	3	0	0	0	0.24913	1	9430	9430		12.532	12.532	1	1125100			8507	9891	4600	4600	11367	11367					0.11834318847832037
FALPKRNLV	9	Unmodified	_FALPKRNLV_					0	0	0		ENST00000374279.3_1_9:114697220-114697295:+|nuORF	ENST00000374279.3_1_9:114697220-114697295:+|nuORF	ENST00000374279.3_1_9:114697220-114697295:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3297119140625	2	529.329476	1056.6444	0.3878	0.00020527	0.12031	6.3681E-05	0.5081	0.00026895	529.3295574632876	43.095	0.62582	43.179	42.896	43.522	0.083996					54	22	3	0	0	0	0.24581	1	9415	9415		16.942	0.79319	1	1049500			8508	9891	4600	4600	11368	11368					0.11834318847832037
FALRVLLV	8	Unmodified	_FALRVLLV_					0	0	0		nc|ENSG00000012061|P07992-4|ERCC1;ENST00000588300.1_1_19:45920077-45926632:-|nuORF;ENST00000592905.5_1_19:45918043-45926632:-|nuORF;nc|ENSG00000012061|P07992-2|ERCC1;ENSG00000012061|ENST00000300853|ERCC1;nc|ENSG00000012061|P07992-3|ERCC1	nc|ENSG00000012061|P07992-4|ERCC1	nc|ENSG00000012061|P07992-4|ERCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7774658203125	2	465.810388	929.606223	0.063808	2.9722E-05	-0.54212	-0.00025253	-0.47831	-0.0002228	465.81010380276473	73.037	0.33582	73.037	72.855	73.191	0					17	11	2	0	0	0	0.34247	1	18651	18651		8.5933	3.3626	1	162780			8509	12563	4601	4601	11369	11369					0.1386043293318835
FALTLPQYI	9	Unmodified	_FALTLPQYI_					0	0	0		ENST00000314425.9_1_X:70473094-70473974:-|nuORF	ENST00000314425.9_1_X:70473094-70473974:-|nuORF	ENST00000314425.9_1_X:70473094-70473974:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2843627929688	2	533.302593	1064.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.511	1	80.511	80.011	81.011	0								0	0	0	0.23367	1	20929	20929		11.64	0.81637	1				8510	9343	4602	4602	11370	11370					0.060921016254724236
FALVFIDFF	9	Unmodified	_FALVFIDFF_					0	0	0			REV__nc|ENSG00000131748|Q14849-2|STARD3	REV__nc|ENSG00000131748|Q14849-2|STARD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2783203125	2	559.799686	1117.58482	0.121	6.7733E-05	-3.2657	-0.0018282	-3.1448	-0.0017604	560.2991335617289	60.338	0.28242	60.433	60.268	60.55	0.095093					14	10	2	0	0	0	0.23147	1	14748	14748		19.439	4.8573	1	410610	+		8511	15533	4603	4603	11371	11371					0.030730031138091363
FAMPYFIQV	9	Oxidation (M)	_FAM(Oxidation (M))PYFIQV_		FAM(1)PYFIQV		FAM(51)PYFIQV	0	0	1		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.2907104492188	2	566.280803	1130.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.789	1	77.789	77.289	78.289	0								0	0	0	0.083439	1	20095	20095		50.855	18.55	1				8512	4369	4604	4604	11372	11372		553			-0.012998311433193521
FAMPYFIQV	9	Oxidation (M)	_FAM(Oxidation (M))PYFIQV_		FAM(1)PYFIQV		FAM(51)PYFIQV	0	0	1		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.2891845703125	2	566.280803	1130.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.819	1	77.819	77.319	78.319	0								0	0	0	0.083439	1	20104	20104		50.855	18.55	1				8513	4369	4604	4604	11373	11373		553			-0.012998311433193521
FAMPYFIQV	9	Oxidation (M)	_FAM(Oxidation (M))PYFIQV_		FAM(1)PYFIQV		FAM(57)PYFIQV	0	0	1		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.289794921875	2	566.280803	1130.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.979	1	77.979	77.479	78.479	0								0	0	0	0.061409	1	20153	20153		57.471	19.497	1				8514	4369	4604	4604	11374	11374		553			-0.012998311433193521
FANHLEEVF	9	Unmodified	_FANHLEEVF_					0	0	0		nc|ENSG00000186628|A1L4K1-2|FSD2;ENSG00000186628|ENST00000334574|FSD2	nc|ENSG00000186628|A1L4K1-2|FSD2	nc|ENSG00000186628|A1L4K1-2|FSD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7720336914062	2	553.269281	1104.52401	0.43906	0.00024292	0.9504	0.00052583	1.3895	0.00076874	553.269933580766	51.24	1.3218	51.287	50.684	52.005	0.046574					136	48	4	0	0	0	0.24913	1	11836	11836		12.532	0.89125	1	1561400			8515	7630	4605	4605	11375	11375					-0.02407133936435457
FANIKLFNK	9	Unmodified	_FANIKLFNK_					0	0	0		ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2698364257812	2	547.821484	1093.62842	0.97303	0.00053305	-0.49597	-0.0002717	0.47706	0.00026135	547.8206993264132	50.174	0.2953	50.219	50.108	50.403	0.044891					12	10	2	0	0	0	0.13898	1	11591	11591		43.858	28.011	1	165210			8516	3973	4606	4606	11376	11376					0.08534612610924341
FANNYKKF	8	Unmodified	_FANNYKKF_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2686157226562	2	516.269084	1030.52362	0.44868	0.00023164	-3.3125	-0.0017102	-2.8638	-0.0014785	516.2672910868388	47.835	0.89806	47.878	47.662	48.56	0.04332					60	33	2	0	0	0	0.28861	1	10911	10911		32.117	7.4431	1	2586900			8517	2959	4607	4607	11377	11377					0.009574911343861459
FANQNLSKK	9	Unmodified	_FANQNLSKK_					0	0	0		ENSG00000196646|ENST00000343979|ZNF136;ENST00000464860.1_1_19:12296590-12298813:+|nuORF	ENSG00000196646|ENST00000343979|ZNF136	ENSG00000196646|ENST00000343979|ZNF136	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.30322265625	2	525.290548	1048.56654	0.66409	0.00034884	0.93664	0.00049201	1.6007	0.00084085	525.2909146894704	26.756	0.73571	26.745	26.222	26.958	-0.01156					34	25	2	0	0	0	0.25989	1	4390	4390		14.838	3.198	1	124600			8518	7890	4608	4608	11378	11378					0.044202611917853574
FAPLYSYIS	9	Unmodified	_FAPLYSYIS_					0	0	0			REV__nc|ENSG00000163754|P46976-3|GYG1	REV__nc|ENSG00000163754|P46976-3|GYG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7698364257812	2	530.771126	1059.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.756	1	41.756	41.256	42.256	0								0	0	0	0.21357	1	9028	9028		18.135	1.0221	1		+		8519	17086	4609	4609	11379	11379					0.00031535837410956447
FAPNTQGLPPF	11	Unmodified	_FAPNTQGLPPF_					0	0	0			REV__ENST00000468429.5_1_21:47321003-47359956:+|nuORF	REV__ENST00000468429.5_1_21:47321003-47359956:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2791748046875	2	594.806031	1187.59751	0.44927	0.00026723	-0.61122	-0.00036356	-0.16195	-9.633E-05	594.8055320389167	68.139	0.12914	68.12	68.068	68.197	-0.019157					6	4	2	0	0	0	0.33085	1	17122	17122		6.2058	0.97511	1	111510	+		8520	18270	4610	4610	11380	11380					0.011214145060193914
FAPRPPAAAL	10	Unmodified	_FAPRPPAAAL_					0	0	0		ENST00000536835.2_1_15:29967228-29967648:+|nuORF	ENST00000536835.2_1_15:29967228-29967648:+|nuORF	ENST00000536835.2_1_15:29967228-29967648:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.27667236328125	2	505.792727	1009.5709	0.35661	0.00018037	-0.054191	-2.741E-05	0.30241	0.00015296	505.7924236878636	57.616	0.39215	57.616	57.405	57.798	0					20	13	2	0	0	0	0.28434	1	13907	13907		25.399	4.9457	1	294660			8521	11685	4611	4611	11381	11381					0.06649770405351774
FAPSTLHFT	9	Unmodified	_FAPSTLHFT_					0	0	0			REV__ENSG00000146250|ENST00000369700|PRSS35	REV__ENSG00000146250|ENST00000369700|PRSS35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2777099609375	2	510.761092	1019.50763	-0.097402	-4.9749E-05	0.52128	0.00026625	0.42388	0.0002165	510.7614885302103	13.993	0.28488	13.888	13.738	14.023	-0.10466					18	9	2	0	0	0	0.25526	1	603	603		7.9102	0	1	70943	+		8522	16338	4612	4612	11382	11382					-0.0013421510251419022
FAPVVPVFILH	11	Unmodified	_FAPVVPVFILH_					0	0	0			REV__ENST00000592782.5_1_17:43185300-43185480:+|nuORF	REV__ENST00000592782.5_1_17:43185300-43185480:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5821228027344	3	413.581382	1237.72232	0.38402	0.00015882	0.52281	0.00021622	0.90683	0.00037505	413.58176939965705	86.111	4.0629	86.196	83.932	87.995	0.084251					387	170	3	0	0	0	0.47429	1	22908	22908		0.50596	0.50596	1	985690	+		8523	22575	4613	4613	11383	11383					0.11296331713219843
FAPVYFPE	8	Unmodified	_FAPVYFPE_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.77703857421875	2	485.239461	968.46437	0.11531	5.5953E-05	-0.31974	-0.00015515	-0.20443	-9.92E-05	485.2392660664974	22.283	0.63729	22.283	21.896	22.533	0					34	22	3	0	0	0	0.34046	1	3112	3112		9.3474	5.7509	1	115360			8524	1560	4614	4614	11384	11384					-0.02112404879812857
FAQKYVFME	9	Unmodified	_FAQKYVFME_					0	0	0			REV__ENST00000555232.5_1_14:21549679-21554039:+|nuORF	REV__ENST00000555232.5_1_14:21549679-21554039:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.3368530273438	2	581.78371	1161.55287	0.15721	9.1461E-05	0.38832	0.00022592	0.54553	0.00031738	581.7838514361248	22.445	0.6239	22.357	22.138	22.762	-0.087608					41	22	2	0	0	0	0.26168	1	3117	3117		1.8442	0	1	158650	+		8525	17266	4615	4615	11385	11385					-0.02144732631631996
FAQQIRLHHF	10	Unmodified	_FAQQIRLHHF_					0	0	0		ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.3524780273438	2	648.851638	1295.68872	0.55096	0.00035749	-0.85269	-0.00055327	-0.30173	-0.00019578	649.3526823795078	21.275	0.45758	21.165	20.95	21.407	-0.11003					25	15	2	0	0	0	0.41512	1	2809	2809		0.40072	0	1	47474			8526	5912	4616	4616	11386	11386					0.05270722994009702
FAQQIRLHHF	10	Unmodified	_FAQQIRLHHF_					0	0	0		ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	648.851638	1295.68872	0.56803	0.00036857	-1.0497	-0.00068109	-0.48166	-0.00031252	648.8507073039843	21.097	0.60598	21.097	20.853	21.459	0	-0.095926	-0.00024894	NaN	0.40072	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42626			8527	5912	4616	4616							0.05270722994009702
FAQQIRLHHF	10	Unmodified	_FAQQIRLHHF_					0	0	0		ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	648.851638	1295.68872	0.55096	0.00035749	-0.85269	-0.00055327	-0.30173	-0.00019578	649.3526823795078	21.275	0.45758	21.165	20.95	21.407	-0.11003	-0.02743	6.7021E-06	NaN	0.40072	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47474			8528	5912	4616	4616							0.05270722994009702
FAQQIRLHHF	10	Unmodified	_FAQQIRLHHF_					0	0	0		ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	648.851638	1295.68872	0.37404	0.0002427	-0.67553	-0.00043832	-0.30149	-0.00019562	648.8511598632093	21.365	0.33926	21.316	21.122	21.461	-0.049377	0.12336	0.0002366	NaN	0.40072	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36526			8529	5912	4616	4616							0.05270722994009702
FARLSEHAT	9	Unmodified	_FARLSEHAT_					0	0	0		nc|ENSG00000128951|P33316-2|DUT;ENSG00000128951|ENST00000331200|DUT	nc|ENSG00000128951|P33316-2|DUT	nc|ENSG00000128951|P33316-2|DUT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2680053710938	2	516.267073	1030.51959	0.66274	0.00034215	0.30569	0.00015782	0.96843	0.00049997	516.267265477032	47.842	0.90563	47.889	47.695	48.601	0.047523					59	33	2	0	0	0	0.23007	1	10910	10910		19.257	1.1106	1	3146300			8530	3403	4617	4617	11387	11387					0.005554016406676965
FARPASRLKP	10	Unmodified	_FARPASRLKP_					0	0	0			REV__ENSG00000104142|ENST00000220509|VPS18	REV__ENSG00000104142|ENST00000220509|VPS18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7954711914062	2	571.843282	1141.67201	0.32778	0.00018744	-1.7203	-0.00098373	-1.3925	-0.00079629	571.8421793922951	56.847	0.4035	56.847	56.582	56.986	0					20	14	2	0	0	0	0.31515	1	13701	13701		8.1555	0	1	225820	+		8531	14397	4618	4618	11388	11388					0.10684222108079666
FARRKQPL	8	Unmodified	_FARRKQPL_					0	0	0			REV__ENST00000535977.5_1_16:677627-678308:+|nuORF	REV__ENST00000535977.5_1_16:677627-678308:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.779541015625	2	508.311618	1014.60868	-0.16029	-8.1477E-05	3.1892	0.0016211	3.0289	0.0015397	508.31295394363855	12.188	0.33775	12.12	11.943	12.281	-0.06806					21	15	2	0	0	0	0.34434	1	6	6		0.79363	0	1	18419	+		8532	22075	4619	4619	11389	11389					0.10196281390847162
FASIENNK	8	Unmodified	_FASIENNK_					0	0	0		nc|ENSG00000064886|Q15782-6|CHI3L2;ENSG00000064886|ENST00000369748|CHI3L2;ENST00000530597.1_1_1:111772478-111773566:+|nuORF;ENST00000526684.1_1_1:111772478-111773917:+|nuORF	nc|ENSG00000064886|Q15782-6|CHI3L2	nc|ENSG00000064886|Q15782-6|CHI3L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.279541015625	2	461.735074	921.455596	0.25048	0.00011566	-1.0082	-0.00046554	-0.75775	-0.00034988	461.73489572189163	40.47	0.51844	40.563	40.254	40.773	0.09267					21	18	2	0	0	0	0.28088	1	8692	8692		39.957	5.8549	1	75380			8533	797	4620	4620	11390	11390					-0.008273785162828062
FASKKQKK	8	Unmodified	_FASKKQKK_					0	0	0			REV__ENSG00000163116|ENST00000295268|STPG2	REV__ENSG00000163116|ENST00000295268|STPG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7663269042969	2	482.800552	963.58655	0.39689	0.00019162	-0.65167	-0.00031463	-0.25478	-0.00012301	482.8001508243843	40.608	0.4015	40.608	40.445	40.847	0					23	14	2	0	0	0	0.34167	1	8717	8717		11.64	0.81637	1	109670	+		8534	17037	4621	4621	11391	11391					0.10330056922418862
FASVFHCPF	9	Unmodified	_FASVFHCPF_					0	0	0			REV__nc|ENSG00000175564|P55916-3|UCP3	REV__nc|ENSG00000175564|P55916-3|UCP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.8184204101562	2	527.744388	1053.47422	0.5954	0.00031422	0.69001	0.00036415	1.2854	0.00067837	527.7455613166683	79.496	0.18617	79.496	79.388	79.575	0					9	6	2	0	0	0	0.25526	1	20619	20619		7.9102	0	1	44306	+		8535	17898	4622	4622	11392	11392					-0.05037540146099673
FASVLDRYI	9	Unmodified	_FASVLDRYI_					0	0	0			REV__nc|ENSG00000163354|Q5T1A1-2|DCST2	REV__nc|ENSG00000163354|Q5T1A1-2|DCST2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2957763671875	2	542.295299	1082.57605	0.72995	0.00039585	-0.95976	-0.00052047	-0.22981	-0.00012462	542.2949201423957	47.558	0.58386	47.558	47.214	47.797	0					52	20	4	0	0	0	0.26612	1	10806	10806		13.906	3.0821	1	804820	+		8536	17047	4623	4623	11393	11393					0.038060294773458736
FATLIRTMKI	10	Unmodified	_FATLIRTMKI_					0	0	0			REV__nc|ENSG00000021826|P31327-3|CPS1	REV__nc|ENSG00000021826|P31327-3|CPS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.358154296875	2	597.357376	1192.7002	0.34401	0.0002055	-1.1329	-0.00067673	-0.78886	-0.00047123	597.3580115867703	100.35	1.162	100.35	99.952	101.11	-0.0069046					379	163	3	0	0	0	0.41085	1	26978	26978		1.4819	0.15237	1	368970	+		8537	22878	4624	4624	11394	11394					0.11155783973163125
FATRYYTL	8	Unmodified	_FATRYYTL_					0	0	0			REV__nc|ENSG00000290687|P0CG31|ZNF286B	REV__nc|ENSG00000290687|P0CG31|ZNF286B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3111572265625	2	517.768917	1033.52328	-0.057954	-3.0007E-05	-2.873	-0.0014875	-2.9309	-0.0015175	517.7684747156655	13.535	0.57946	13.436	13.189	13.768	-0.099291					47	20	3	0	0	0	0.34353	1	424	424		4.756	1.1595	1	279100	+		8538	23251	4625	4625	11395	11395					0.007860714145181191
FAVDMVPR	8	Unmodified	_FAVDMVPR_					0	0	0			REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2	REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.74420166015625	2	467.744388	933.474223	0.22903	0.00010713	-0.49213	-0.00023019	-0.2631	-0.00012306	467.7441259657256	38.349	0.88497	38.446	37.953	38.838	0.097527					75	31	3	0	0	0	0.41758	1	7951	7951		16.942	0	1	815050	+		8539	14360	4626	4626	11396	11396					0.004824598539244107
FAVDQQDLLW	10	Unmodified	_FAVDQQDLLW_					0	0	0			REV__ENSG00000102794|ENST00000377462|ACOD1	REV__ENSG00000102794|ENST00000377462|ACOD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	617.3350219726562	2	617.808771	1233.60299	0.30537	0.00018866	-1.9584	-0.0012099	-1.653	-0.0010212	617.8079818130259	71.192	0.99332	71.167	71.077	72.07	-0.024872					39	35	2	0	0	0	0.25821	1	18151	18151		34.932	7.3033	1	243310	+		8540	14334	4627	4627	11397	11397					-0.004469067021318551
FAVFHPHFVL	10	Unmodified	_FAVFHPHFVL_					0	0	0		ENSG00000147262|ENST00000682440|GPR119	ENSG00000147262|ENST00000682440|GPR119	ENSG00000147262|ENST00000682440|GPR119	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5313720703125	3	405.222076	1212.6444	0.061023	2.4728E-05	-0.86634	-0.00035106	-0.80532	-0.00032633	405.2217735886693	44.381	0.74992	44.45	44.093	44.843	0.068569					89	27	4	0	0	0	0.31395	1	9794	9794		4.1895	1.7547	1	969700			8541	4759	4628	4628	11398	11398					0.04658318847850751
FAVFHPHFVL	10	Unmodified	_FAVFHPHFVL_					0	0	0		ENSG00000147262|ENST00000682440|GPR119	ENSG00000147262|ENST00000682440|GPR119	ENSG00000147262|ENST00000682440|GPR119	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.53143310546875	3	405.222076	1212.6444	-0.028019	-1.1354E-05	-0.85012	-0.00034449	-0.87814	-0.00035584	405.2217746351696	44.28	0.76127	44.355	44.122	44.883	0.075047					78	27	4	0	0	0	0.31395	1	9775	9775		4.1895	0	1	961410			8542	4759	4628	4628	11399	11399					0.04658318847850751
FAVSPVSTF	9	Unmodified	_FAVSPVSTF_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7607421875	2	477.750193	953.485833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.073	1	66.06	65.56	66.56	-0.013588								0	0	0	0.12743	1	16506	16506		39.957	3.9131	1				8543	5566	4629	4629	11400	11400					0.007229801489188503
FAVYYASL	8	Unmodified	_FAVYYASL_					0	0	0			REV__nc|ENSG00000121775|Q9GZU3-4|TMEM39B	REV__nc|ENSG00000121775|Q9GZU3-4|TMEM39B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.25347900390625	2	467.239461	932.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.049	1	26.01	25.51	26.51	-0.038671								0	0	0	0.33941	1	4239	4239		19.439	0	1		+		8544	15131	4630	4630	11401	11401					-0.004564048798215481
FAWHRRRLYYD	11	Unmodified	_FAWHRRRLYYD_					0	0	0			REV__ENSG00000196917|ENST00000432564|HCAR1	REV__ENSG00000196917|ENST00000432564|HCAR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7988891601562	3	528.272381	1581.79531	0.12508	6.6078E-05	0.23728	0.00012535	0.36237	0.00019143	528.2725180212775	12.657	0.32357	12.558	12.433	12.757	-0.09929					22	10	3	0	0	0	0.33352	1	229	229		0	0	1	95174	+		8545	18695	4631	4631	11402	11402					0.027688534885783156
FAYRMGVTV	9	Oxidation (M)	_FAYRM(Oxidation (M))GVTV_		FAYRM(1)GVTV		FAYRM(86)GVTV	0	0	1		ENST00000423128.5_3_7:97880760-97881154:-|nuORF;ENST00000447648.6_1_7:97880760-97881562:-|nuORF;ENST00000420697.1_3_7:97880760-97881394:-|nuORF	ENST00000423128.5_3_7:97880760-97881154:-|nuORF	ENST00000423128.5_3_7:97880760-97881154:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.26806640625	2	530.268227	1058.5219	0.4648	0.00024647	-0.37948	-0.00020122	0.085322	4.5243E-05	530.2677247094271	41.639	0.52015	41.639	41.355	41.875	0					28	23	2	0	0	0	0.0059482	1	8986	8986		85.642	50.709	1	2136600			8546	10361	4632	4632	11403	11403		943			-0.005018859459141822
FAYRMGVTV	9	Oxidation (M)	_FAYRM(Oxidation (M))GVTV_		FAYRM(1)GVTV		FAYRM(86)GVTV	0	0	1		ENST00000423128.5_3_7:97880760-97881154:-|nuORF;ENST00000447648.6_1_7:97880760-97881562:-|nuORF;ENST00000420697.1_3_7:97880760-97881394:-|nuORF	ENST00000423128.5_3_7:97880760-97881154:-|nuORF	ENST00000423128.5_3_7:97880760-97881154:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.268310546875	2	530.268227	1058.5219	0.27164	0.00014404	-0.18144	-9.621E-05	0.090204	4.7832E-05	530.2680483791606	41.356	0.4762	41.446	41.135	41.611	0.090248					29	17	2	0	0	0	0.0059482	2	8879	8879;8924		85.642	45.684	1	1361800			8547	10361	4632	4632	11404;11405	11404		943			-0.005018859459141822
FAYRMGVTV	9	Oxidation (M)	_FAYRM(Oxidation (M))GVTV_		FAYRM(1)GVTV		FAYRM(76)GVTV	0	0	1		ENST00000423128.5_3_7:97880760-97881154:-|nuORF;ENST00000447648.6_1_7:97880760-97881562:-|nuORF;ENST00000420697.1_3_7:97880760-97881394:-|nuORF	ENST00000423128.5_3_7:97880760-97881154:-|nuORF	ENST00000423128.5_3_7:97880760-97881154:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2684326171875	2	530.268227	1058.5219	0.53943	0.00028604	-0.53909	-0.00028586	0.0003395	1.8003E-07	530.2677126261843	41.419	0.45217	41.516	41.148	41.6	0.096626					36	16	3	0	0	0	0.012386	2	8855	8855;8905		75.761	40.829	1	2439200			8548	10361	4632	4632	11406;11407	11406		943			-0.005018859459141822
FAYRRKYEHF	10	Unmodified	_FAYRRKYEHF_					0	0	0		nc|ENSG00000174527|Q8N1T3|MYO1H;nc|ENSG00000174527|Q8N1T3-3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2295227050781	3	472.910561	1415.70985	0.36801	0.00017404	0.54989	0.00026005	0.9179	0.00043409	473.2436676788557	37.209	0.14754	37.302	37.248	37.395	0.093014					5	4	2	0	0	0	0.31942	1	7623	7623		3.5871	0	1	41117			8549	12844	4633	4633	11408	11408					0.01862688302890092
FAYSSRIAI	9	Unmodified	_FAYSSRIAI_					0	0	0		ENSG00000183655|ENST00000337975|KLHL25	ENSG00000183655|ENST00000337975|KLHL25	ENSG00000183655|ENST00000337975|KLHL25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.3060913085938	2	514.282192	1026.54983	0.021843	1.1234E-05	-1.5543	-0.00079934	-1.5324	-0.0007881	514.2821696419517	52.234	0.56672	52.233	51.982	52.548	-0.00081253					43	20	3	0	0	0	0.17696	1	12214	12214		36.506	4.2007	1	281890			8550	7386	4634	4634	11409	11409					0.037617603058379245
FAYSSRIAI	9	Unmodified	_FAYSSRIAI_					0	0	0		ENSG00000183655|ENST00000337975|KLHL25	ENSG00000183655|ENST00000337975|KLHL25	ENSG00000183655|ENST00000337975|KLHL25	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	514.282192	1026.54983	0.27402	0.00014093	-1.3844	-0.00071199	-1.1104	-0.00057106	514.2819605511559	52.123	0.43935	52.123	51.885	52.324	0	-0.017751	5.1268E-06	NaN	36.506	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322350			8551	7386	4634	4634							0.037617603058379245
FAYSSRIAI	9	Unmodified	_FAYSSRIAI_					0	0	0		ENSG00000183655|ENST00000337975|KLHL25	ENSG00000183655|ENST00000337975|KLHL25	ENSG00000183655|ENST00000337975|KLHL25	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	514.282192	1026.54983	0.27405	0.00014094	-1.3087	-0.00067302	-1.0346	-0.00053209	514.2818687011145	52.015	0.57217	52.066	51.817	52.389	0.050575	-0.074743	8.3058E-05	NaN	36.506	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357790			8552	7386	4634	4634							0.037617603058379245
FAYTATLTV	9	Unmodified	_FAYTATLTV_					0	0	0		ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7634582519531	2	493.7633	985.512048	0.54903	0.00027109	0.28486	0.00014065	0.83389	0.00041174	493.76323461876467	66.354	0.73206	66.354	66.124	66.856	0					61	25	3	0	0	0	0.00077644	2	16587	16587;16644		125.62	66.946	1	861980			8553	7089	4635	4635	11410;11411	11410					0.018712493203679514
FAYTATLTV	9	Unmodified	_FAYTATLTV_					0	0	0		ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.76324462890625	2	493.7633	985.512048	0.51212	0.00025286	0.21043	0.0001039	0.72254	0.00035676	493.7632303112288	66.252	0.82713	66.336	66.05	66.877	0.083832					73	29	3	0	0	0	0.00077644	2	16541	16541;16589		125.62	66.946	1	766790			8554	7089	4635	4635	11412;11413	11412					0.018712493203679514
FAYTATLTV	9	Unmodified	_FAYTATLTV_					0	0	0		ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7632751464844	2	493.7633	985.512048	0.33725	0.00016652	0.28575	0.00014109	0.623	0.00030762	493.76330389216173	66.378	0.83272	66.364	66.091	66.923	-0.013588					62	30	3	0	0	0	0.00077644	2	16588	16588;16648		125.62	66.946	1	782580			8555	7089	4635	4635	11414;11415	11414					0.018712493203679514
FAYTSQITV	9	Unmodified	_FAYTSQITV_					0	0	0		KLHL20|p.K600Nfs*2|1|0.05|ENSG00000076321|chr1:173785216-173785217|-/CT|frameshift_variant;KLHL20|p.M601Rfs*9|1|0.05|ENSG00000076321|chr1:173785217-173785218|-/CGACTAAGATGTT|frameshift_variant;ENSG00000076321|ENST00000209884|KLHL20;ENST00000493170.1_1_1:173684720-173703518:+|nuORF	KLHL20|p.K600Nfs*2|1|0.05|ENSG00000076321|chr1:173785216-173785217|-/CT|frameshift_variant	KLHL20|p.K600Nfs*2|1|0.05|ENSG00000076321|chr1:173785216-173785217|-/CT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2667236328125	2	515.266207	1028.51786	0.7096	0.00036563	-0.069523	-3.5823E-05	0.64008	0.00032981	515.2660543535413	60.852	0.4147	60.852	60.577	60.992	0					31	14	3	0	0	0	0.011693	1	14894	14894		76.825	30.804	1	942390			8556	1062	4636	4636	11416	11416					0.004743478320278882
FAYTSQITV	9	Unmodified	_FAYTSQITV_					0	0	0		KLHL20|p.K600Nfs*2|1|0.05|ENSG00000076321|chr1:173785216-173785217|-/CT|frameshift_variant;KLHL20|p.M601Rfs*9|1|0.05|ENSG00000076321|chr1:173785217-173785218|-/CGACTAAGATGTT|frameshift_variant;ENSG00000076321|ENST00000209884|KLHL20;ENST00000493170.1_1_1:173684720-173703518:+|nuORF	KLHL20|p.K600Nfs*2|1|0.05|ENSG00000076321|chr1:173785216-173785217|-/CT|frameshift_variant	KLHL20|p.K600Nfs*2|1|0.05|ENSG00000076321|chr1:173785216-173785217|-/CT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.266845703125	2	515.266207	1028.51786	0.55272	0.0002848	0.20684	0.00010658	0.75956	0.00039137	515.2662534185862	60.846	0.58699	60.836	60.546	61.133	-0.0094566					43	21	3	0	0	0	0.0037449	1	14887	14887		96.367	42.534	1	855320			8557	1062	4636	4636	11417	11417					0.004743478320278882
FCCDYLFPVLR	11	Unmodified	_FCCDYLFPVLR_					0	0	0		ENST00000447595.1_1_1:179054682-179054961:+|nuORF	ENST00000447595.1_1_1:179054682-179054961:+|nuORF	ENST00000447595.1_1_1:179054682-179054961:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.756103515625	3	459.22276	1374.64645	0.097758	4.4893E-05	1.962	0.000901	2.0598	0.00094589	459.22367454744705	32.826	0.55344	32.881	32.675	33.228	0.055309					27	19	2	0	0	0	0.32824	1	6313	6313		12.856	3.6122	1	202700			8558	10606	4637	4637	11418	11418					-0.02588756520890456
FCCFYLYLI	9	Unmodified	_FCCFYLYLI_					0	0	0		chrX:70610543-70613253|397|28.71|0.16|7.46|-|0|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|6	chrX:70610543-70613253|397|28.71|0.16|7.46|-|0|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|6	chrX:70610543-70613253|397|28.71|0.16|7.46|-|0|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.7813720703125	2	592.779582	1183.54461	0.79906	0.00047367	1.9069	0.0011303	2.7059	0.001604	592.7809104418055	45.855	0.41492	45.855	45.64	46.055	0					28	14	3	0	0	0	0.21902	1	10297	10297		20.871	5.6227	1	245590			8559	180	4638	4638	11419	11419					-0.039820028726353485
FCCFYLYLI	9	Unmodified	_FCCFYLYLI_					0	0	0		chrX:70610543-70613253|397|28.71|0.16|7.46|-|0|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|6	chrX:70610543-70613253|397|28.71|0.16|7.46|-|0|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|6	chrX:70610543-70613253|397|28.71|0.16|7.46|-|0|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.3323974609375	2	592.779582	1183.54461	0.53599	0.00031772	2.3559	0.0013966	2.8919	0.0017143	592.7808638349031	45.653	0.50746	45.713	45.418	45.926	0.059837					24	17	2	0	0	0	0.25291	1	10148	10148		9.3474	2.0582	1	278940			8560	180	4638	4638	11420	11420					-0.039820028726353485
FCCGCCHRSKC	11	Unmodified	_FCCGCCHRSKC_					0	0	0		ENSG00000105697|ENST00000222304|HAMP	ENSG00000105697|ENST00000222304|HAMP	ENSG00000105697|ENST00000222304|HAMP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.7238159179688	2	623.723966	1245.43338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.68	1	103.68	103.18	104.18	-0.0011139								0	0	0	0.38199	1	27570	27570		0.35063	0.043601	1				8561	2011	4639	4639	11421	11421					-0.17952032115522343
FCEFMCYVF	9	Unmodified	_FCEFMCYVF_					0	0	0			REV__ACER3|p.V258Dfs*8|1|0.05|ENSG00000078124|chr11:77020295-77020296|-/ATATCAGAGAGTATTTTTAT|frameshift_variant	REV__ACER3|p.V258Dfs*8|1|0.05|ENSG00000078124|chr11:77020295-77020296|-/ATATCAGAGAGTATTTTTAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.2979125976562	2	594.731774	1187.449	0.86767	0.00051603	1.9357	0.0011512	2.8034	0.0016673	594.732851692879	78.317	0.68346	78.317	77.902	78.586	0					36	25	2	0	0	0	0.25938	1	20280	20280		4.3292	0.38484	1	112940	+		8562	13071	4640	4640	11422	11422					-0.1372309905518705
FCFAIFGLGK	10	Unmodified	_FCFAIFGLGK_					0	0	0			REV__ENST00000309137.12_1_16:57187730-57187889:-|nuORF	REV__ENST00000309137.12_1_16:57187730-57187889:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7928466796875	2	551.791338	1101.56812	0.77773	0.00042914	1.4682	0.00081016	2.246	0.0012393	551.7924353810503	77.67	0.93374	77.726	77.258	78.191	0.055412					98	33	4	0	0	0	0.18807	1	20063	20063		34.102	9.4286	1	1478900	+		8563	19886	4641	4641	11423	11423					0.021401789562105478
FCFAIFGLGK	10	Unmodified	_FCFAIFGLGK_					0	0	0			REV__ENST00000309137.12_1_16:57187730-57187889:-|nuORF	REV__ENST00000309137.12_1_16:57187730-57187889:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2662963867188	2	551.791338	1101.56812	0.77773	0.00042914	1.4682	0.00081016	2.246	0.0012393	551.7924353810503	77.67	0.93374	77.726	77.258	78.191	0.055412					98	33	4	0	0	0	0.31267	1	19936	19936		14.838	1.3304	1	1478900	+		8564	19886	4641	4641	11424	11424					0.021401789562105478
FCFSKIFN	8	Unmodified	_FCFSKIFN_					0	0	0		nc|ENSG00000134324|Q14693-4|LPIN1	nc|ENSG00000134324|Q14693-4|LPIN1	nc|ENSG00000134324|Q14693-4|LPIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.7618103027344	2	503.246763	1004.47897	0.12347	6.2135E-05	-0.43062	-0.00021671	-0.30715	-0.00015457	503.24667844514494	18.025	0.57834	17.967	17.706	18.285	-0.058393					35	20	2	0	0	0	0.34117	1	1815	1815		13.906	13.906	1	62845			8565	12707	4642	4642	11425	11425					-0.02308656003322085
FCFVFVQK	8	Unmodified	_FCFVFVQK_					0	0	0		ENST00000396045.7_1_7:36894090-36894324:-|nuORF	ENST00000396045.7_1_7:36894090-36894324:-|nuORF	ENST00000396045.7_1_7:36894090-36894324:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.79046630859375	2	509.264956	1016.51536	0.11815	6.017E-05	0.13845	7.0509E-05	0.2566	0.00013068	509.26455703316304	22.678	0.25742	22.678	22.533	22.791	0					9	8	2	0	0	0	0.34272	1	3185	3185		7.9102	3.1541	1	19620			8566	10104	4643	4643	11426	11426					0.007762208933968395
FCFYFLQL	8	Unmodified	_FCFYFLQL_					0	0	0			REV__ENSG00000176281|ENST00000315915|OR4K5	REV__ENSG00000176281|ENST00000315915|OR4K5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7646484375	2	540.764789	1079.51502	0.48371	0.00026157	2.0987	0.0011349	2.5824	0.0013965	540.7655200956998	71.377	0.45518	71.438	71.117	71.573	0.060783					36	15	4	0	0	0	0.33916	1	18166	18166		26.341	3.1929	1	355500	+		8567	17931	4644	4644	11427	11427					-0.02155198826449123
FCGPVRPY	8	Unmodified	_FCGPVRPY_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7314453125	2	469.73128	937.448008	0.23223	0.00010908	0.85309	0.00040072	1.0853	0.00050981	469.7315100493064	87.062	0.85787	87.062	86.785	87.643	0					101	36	5	0	0	0	0.45169	1	22914	22914		5.2307	0.90143	1	1198000			8568	8254	4645	4645	11428	11428					-0.02321809317561474
FCGPVRPY	8	Unmodified	_FCGPVRPY_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7314147949219	2	469.73128	937.448008	0.3469	0.00016295	0.53913	0.00025324	0.88602	0.00041619	469.73146429731884	87.076	0.93709	87.071	86.773	87.71	-0.0056229					124	43	5	0	0	0	0.45169	1	22993	22993		5.2307	5.2307	1	1110600			8569	8254	4645	4645	11429	11429					-0.02321809317561474
FCGPVRPY	8	Unmodified	_FCGPVRPY_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	469.73128	937.448008	0.18766	8.8149E-05	0.74049	0.00034783	0.92815	0.00043598	469.7314646903029	86.983	0.84637	87.07	86.754	87.6	0.087097	0.0025154	6.0237E-05	NaN	5.2307	108	36	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1044600			8570	8254	4645	4645							-0.02321809317561474
FCHHLSLPVSM	11	Unmodified	_FCHHLSLPVSM_					0	0	0			REV__ENST00000424408.6_1_6:112443358-112450212:-|nuORF	REV__ENST00000424408.6_1_6:112443358-112450212:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.20684814453125	3	424.207221	1269.59983	0.031362	1.3304E-05	-0.97196	-0.00041231	-0.9406	-0.00039901	424.20674524821817	23.615	0.42915	23.576	23.364	23.793	-0.038927					26	14	2	0	0	0	0.45202	1	3514	3514		4.4062	1.3339	1	151100	+		8571	20890	4646	4646	11430	11430					-0.024181963521641592
FCICQNFL	8	Unmodified	_FCICQNFL_					0	0	0		nc|ENSG00000126858|Q8IXI2-5|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1	nc|ENSG00000126858|Q8IXI2-5|RHOT1	nc|ENSG00000126858|Q8IXI2-5|RHOT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7873840332031	2	494.224974	986.435394	0.81109	0.00040086	0.14412	7.1228E-05	0.95521	0.00047209	494.22472681373097	50.563	0.90495	50.563	50.267	51.172	0					61	32	3	0	0	0	0.3366	1	11762	11762		18.135	4.2289	1	688760			8572	3296	4647	4647	11431	11431					-0.05836588772115192
FCIWIPGCN	9	Unmodified	_FCIWIPGCN_					0	0	0			REV__ENST00000324545.8_2_X:41084189-41084365:+|nuORF	REV__ENST00000324545.8_2_X:41084189-41084365:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3165283203125	2	526.738248	1051.46194	0.21243	0.0001119	-1.0354	-0.00054537	-0.82294	-0.00043347	527.2390304328092	15.265	0.29086	15.201	15.069	15.36	-0.064413					13	9	2	0	0	0	0.25811	1	978	978		5.2307	1.2863	1	32083	+		8573	19985	4648	4648	11432	11432					-0.06172899880766636
FCKFHTSF	8	Unmodified	_FCKFHTSF_					0	0	0		nc|ENSG00000290584|Q9P1P4|TAAR3P	nc|ENSG00000290584|Q9P1P4|TAAR3P	nc|ENSG00000290584|Q9P1P4|TAAR3P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3051452636719	2	508.736563	1015.45857	0.45104	0.00022946	1.263	0.00064255	1.7141	0.00087201	509.2371673273553	83.651	0.62939	83.728	83.243	83.873	0.077095					38	24	2	0	0	0	0.34185	1	21797	21797		10.183	1.5901	1	100030			8574	13009	4649	4649	11433	11433					-0.04853826663111249
FCKKVPII	8	Unmodified	_FCKKVPII_					0	0	0		ENSG00000173156|ENST00000308831|RHOD	ENSG00000173156|ENST00000308831|RHOD	ENSG00000173156|ENST00000308831|RHOD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2909851074219	2	474.290974	946.567395	0.19114	9.0657E-05	-0.16066	-7.6201E-05	0.03048	1.4457E-05	474.2907796338292	71.479	1.8231	71.479	70.873	72.696	0					207	65	4	0	0	0	0.44842	1	18509	18509		6.3541	3.4649	1	2291700			8575	6695	4650	4650	11434	11434					0.09197384307162793
FCKKVPII	8	Unmodified	_FCKKVPII_					0	0	0		ENSG00000173156|ENST00000308831|RHOD	ENSG00000173156|ENST00000308831|RHOD	ENSG00000173156|ENST00000308831|RHOD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2909851074219	2	474.290974	946.567395	0.33668	0.00015968	-0.33808	-0.00016035	-0.0013973	-6.6274E-07	474.2907060436796	71.591	1.9657	71.563	70.854	72.82	-0.027275					229	70	4	0	0	0	0.45851	2	18482	18482;18533		2.8892	2.8892	1	2573300			8576	6695	4650	4650	11435;11436	11435					0.09197384307162793
FCKVQDYLRRF	11	Unmodified	_FCKVQDYLRRF_					0	0	0		ENST00000475550.5_1_2:64117178-64118358:+|nuORF	ENST00000475550.5_1_2:64117178-64118358:+|nuORF	ENST00000475550.5_1_2:64117178-64118358:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.6663818359375	3	492.258973	1473.75509	0.31296	0.00015406	-1.1769	-0.00057936	-0.86398	-0.0004253	492.5928042052409	26.668	0.27498	26.629	26.547	26.822	-0.038671					10	9	2	0	0	0	0.33303	1	4452	4452		1.1098	0.096179	1	37297			8577	10937	4651	4651	11437	11437					0.03716170773736849
FCLFVLISAV	10	Unmodified	_FCLFVLISAV_					0	0	0			REV__ENST00000525727.5_1_11:450434-479191:+|nuORF	REV__ENST00000525727.5_1_11:450434-479191:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3141479492188	2	556.314646	1110.61474	-0.091865	-5.1106E-05	-0.56382	-0.00031366	-0.65569	-0.00036477	556.3142748833251	14.159	0.31212	14.093	13.949	14.261	-0.066068					23	10	3	0	0	0	0.33268	1	652	652		15.847	1.0089	1	117950	+		8578	17861	4652	4652	11438	11438					0.0638561878749897
FCLHGRTQSRN	11	Unmodified	_FCLHGRTQSRN_					0	0	0			REV__ENST00000402506.5_1_7:2567604-2567793:+|nuORF	REV__ENST00000402506.5_1_7:2567604-2567793:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.6084899902344	3	440.219289	1317.63604	0.24365	0.00010726	-0.64328	-0.00028318	-0.39963	-0.00017593	440.2190204728772	85.69	0.84621	85.774	85.206	86.053	0.084251					45	31	2	0	0	0	0.33326	1	22459	22459		0.094841	0	1	132940	+		8579	20716	4653	4653	11439	11439					-0.010076031310973121
FCLSSFRIRYD	11	Unmodified	_FCLSSFRIRYD_					0	0	0			REV__ENSG00000129317|ENST00000344862|PUS7L	REV__ENSG00000129317|ENST00000344862|PUS7L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.79974365234375	3	469.567695	1405.68126	0.19851	9.3215E-05	4.4334	0.0020818	4.6319	0.002175	469.56995954308564	88.366	0.10686	88.366	88.273	88.38	0					8	6	2	0	0	0	0.33303	1	23321	23321		2.4348	0.69251	1	55401	+		8580	15411	4654	4654	11440	11440					-0.005357973885566025
FCLTINLLL	9	Unmodified	_FCLTINLLL_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3070068359375	2	525.306821	1048.59909	0.64565	0.00033917	-0.79535	-0.0004178	-0.1497	-7.8637E-05	525.3062554792866	90.61	0.62118	90.611	90.306	90.927	0.0003891					81	46	2	0	0	0	0.31038	1	24000	24000		7.2892	0	1	335570			8581	2855	4655	4655	11441	11441					0.07673332270428546
FCLTINLLL	9	Unmodified	_FCLTINLLL_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	525.306821	1048.59909	0.54535	0.00028647	-0.58876	-0.00030928	-0.043416	-2.2807E-05	525.3063054662949	90.634	0.80274	90.634	90.132	90.934	0	0.0015968	0.00010192	NaN	7.2892	104	63	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303150			8582	2855	4655	4655							0.07673332270428546
FCMGQDNSRN	10	Unmodified	_FCMGQDNSRN_					0	0	0			REV__ENST00000510796.1_1_5:180683812-180687220:-|nuORF	REV__ENST00000510796.1_1_5:180683812-180687220:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.2348022460938	2	586.23459	1170.45463	-0.0048832	-2.8627E-06	0.5234	0.00030683	0.51852	0.00030397	586.2349018141435	97.987	0.52998	97.987	97.786	98.316	0					145	61	3	0	0	0	0.35231	1	26212	26212		12.241	12.241	1	514780	+		8583	18279	4656	4656	11442	11442					-0.12378284219153102
FCRTSYHFY	9	Unmodified	_FCRTSYHFY_					0	0	0		HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|250|3|anti-sense	HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|250|3|anti-sense	HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|250|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.51470947265625	3	408.514931	1222.52296	0.0061465	2.5109E-06	0.53077	0.00021683	0.53692	0.00021934	408.5148877943618	74.225	2.8817	74.225	72.215	75.097	0					287	102	5	0	0	0	0.34374	1	18902	18902		1.1933	1.1933	1	1006500			8584	12422	4657	4657	11443	11443					-0.07939671576991714
FCSDKQVVEL	10	Unmodified	_FCSDKQVVEL_					0	0	0			REV__nc|ENSG00000196083|Q9NPH3-3|IL1RAP	REV__nc|ENSG00000196083|Q9NPH3-3|IL1RAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.288330078125	2	584.289356	1166.56416	0.32512	0.00018996	-2.3729	-0.0013864	-2.0477	-0.0011965	584.2885698500854	57.709	2.7743	57.709	57.323	60.098	0					299	97	6	0	0	0	0.16839	1	14002	14002		36.506	2.1045	1	98052000	+		8585	18612	4658	4658	11444	11444					-0.012459553281814806
FCSDKQVVEL	10	Unmodified	_FCSDKQVVEL_					0	0	0			REV__nc|ENSG00000196083|Q9NPH3-3|IL1RAP	REV__nc|ENSG00000196083|Q9NPH3-3|IL1RAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2891235351562	2	584.289356	1166.56416	0.29265	0.00017099	-2.3365	-0.0013652	-2.0438	-0.0011942	584.2885505856126	57.507	2.8248	57.592	57.156	59.981	0.085617					316	101	6	0	0	0	0.11961	2	13903	13903;14003		43.772	3.8227	1	84754000	+		8586	18612	4658	4658	11445;11446	11445					-0.012459553281814806
FCSPTFHESCL	11	Unmodified	_FCSPTFHESCL_					0	0	0			REV__ENSG00000161277|ENST00000292894|THAP8	REV__ENSG00000161277|ENST00000292894|THAP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	635.7651977539062	2	635.765191	1269.51583	0.43356	0.00027564	-0.37968	-0.00024139	0.053885	3.4258E-05	635.7650721731833	49.5	1.0008	49.5	49.19	50.191	0					107	36	4	0	0	0	0.32017	2	11468	11376;11468		20.415	10.341	1	1739000	+		8587	16938	4659	4659	11447;11448	11448					-0.10814772239700687
FCSPTFHESCL	11	Unmodified	_FCSPTFHESCL_					0	0	0			REV__ENSG00000161277|ENST00000292894|THAP8	REV__ENSG00000161277|ENST00000292894|THAP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	635.7653198242188	2	635.765191	1269.51583	0.50773	0.00032279	-0.50239	-0.0003194	0.0053392	3.3945E-06	635.7650153687373	49.549	0.97462	49.594	49.293	50.268	0.044891					99	36	4	0	0	0	0.36257	2	11400	11400;11448		16.149	1.3108	1	2040900	+		8588	16938	4659	4659	11449;11450	11449					-0.10814772239700687
FCSPTFHESCL	11	Unmodified	_FCSPTFHESCL_					0	0	0			REV__ENSG00000161277|ENST00000292894|THAP8	REV__ENSG00000161277|ENST00000292894|THAP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	635.7652587890625	2	635.765191	1269.51583	0.50147	0.00031882	-0.57349	-0.0003646	-0.072017	-4.5786E-05	635.7649957065265	49.422	1.0333	49.454	49.18	50.213	0.032043					103	37	4	0	0	0	0.36257	2	11349	11349;11448		16.149	5.9985	1	1839700	+		8589	16938	4659	4659	11451;11452	11451					-0.10814772239700687
FCSPTFHESCL	11	Unmodified	_FCSPTFHESCL_					0	0	0			REV__ENSG00000161277|ENST00000292894|THAP8	REV__ENSG00000161277|ENST00000292894|THAP8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	635.765191	1269.51583	0.43356	0.00027564	-0.37968	-0.00024139	0.053885	3.4258E-05	635.7650721731833	49.5	1.0008	49.5	49.19	50.191	0	-0.015552	0.00011987	NaN	20.415	107	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1739000	+		8590	16938	4659	4659							-0.10814772239700687
FCSPTFHESCL	11	Unmodified	_FCSPTFHESCL_					0	0	0			REV__ENSG00000161277|ENST00000292894|THAP8	REV__ENSG00000161277|ENST00000292894|THAP8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	635.765191	1269.51583	0.50147	0.00031882	-0.57349	-0.0003646	-0.072017	-4.5786E-05	635.7649957065265	49.422	1.0333	49.454	49.18	50.213	0.032043	-0.062241	-0.00012657	NaN	20.415	103	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1839700	+		8591	16938	4659	4659							-0.10814772239700687
FCTLFTPMLN	10	Unmodified	_FCTLFTPMLN_					0	0	0		nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.7857666015625	2	593.785395	1185.55624	0.3681	0.00021857	0.75608	0.00044895	1.1242	0.00066752	593.7855573585853	80.244	1.1161	80.309	79.862	80.979	0.065094					62	43	3	0	0	0	0.38773	1	20807	20807		5.7319	0.43497	1	201480			8592	12984	4660	4660	11453	11453					-0.02911805849294069
FCVAEPRG	8	Unmodified	_FCVAEPRG_					0	0	0			REV__chr4:110550874-110553315|196|31.01|0.22|7.13|+|0|TE_info:ERVL-E-int,ERVL-E-int_dup2396,ERVL,LTR,donor,+,110550832,110550874|None,ENPEP|1	REV__chr4:110550874-110553315|196|31.01|0.22|7.13|+|0|TE_info:ERVL-E-int,ERVL-E-int_dup2396,ERVL,LTR,donor,+,110550832,110550874|None,ENPEP|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.6084289550781	2	439.713088	877.411622	0.18655	8.2028E-05	1.0144	0.00044605	1.201	0.00052808	439.7132165364533	88.344	0.6432	88.341	88.108	88.752	-0.0028381					54	30	3	0	0	0	0.34297	1	23404	23404		6.3541	0	1	313950	+		8593	13195	4661	4661	11454	11454					-0.0319868621426167
FCVILPEI	8	Unmodified	_FCVILPEI_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;ENST00000424880.2_1_3:127771637-127778953:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2501220703125	2	467.259339	932.504126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.954	1	82.023	81.523	82.523	0.068993								0	0	0	0.34229	1	21362	21362		18.135	3.5533	1				8594	732	4662	4662	11455	11455					0.03517398799260718
FDDRNVWFNI	10	Unmodified	_FDDRNVWFNI_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B;nc|ENSG00000188649|Q6DHV5-1|CC2D2B;nc|ENSG00000188649|Q6DHV5-2|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.9090881347656	3	442.547288	1324.62004	0.22784	0.00010083	1.1525	0.00051005	1.3804	0.00061088	442.5477387365668	32.736	0.87479	32.79	32.441	33.316	0.054375					84	31	4	0	0	0	0.32051	1	6167	6167		3.8763	3.8763	1	472580			8595	7765	4663	4663	11456	11456					-0.029289860963217507
FDDRNVWFNI	10	Unmodified	_FDDRNVWFNI_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B;nc|ENSG00000188649|Q6DHV5-1|CC2D2B;nc|ENSG00000188649|Q6DHV5-2|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	442.547288	1324.62004	0.27084	0.00011986	0.81085	0.00035884	1.0817	0.0004787	442.54763934998226	32.787	0.73347	32.787	32.5	33.233	0	0.013605	-0.00025806	NaN	3.8763	60	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	529530			8596	7765	4663	4663							-0.029289860963217507
FDDRNVWFNI	10	Unmodified	_FDDRNVWFNI_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B;nc|ENSG00000188649|Q6DHV5-1|CC2D2B;nc|ENSG00000188649|Q6DHV5-2|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	442.547288	1324.62004	0.24838	0.00010992	1.0609	0.00046952	1.3093	0.00057944	442.5478314093057	32.687	0.80093	32.742	32.37	33.171	0.055309	-0.030799	7.3975E-05	NaN	3.8763	75	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	583320			8597	7765	4663	4663							-0.029289860963217507
FDEDERWTNN	10	Unmodified	_FDEDERWTNN_					0	0	0		ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	ENSG00000196611|ENST00000315274|MMP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.51812744140625	3	442.517946	1324.53201	0.078518	3.4746E-05	0.61088	0.00027032	0.6894	0.00030507	442.51819699740776	46.321	0.76756	46.384	46.068	46.836	0.063026					82	27	4	0	0	0	0.39782	1	10449	10449		3.8763	0.28927	1	1254400			8598	7886	4664	4664	11457	11457					-0.11727651477599466
FDEDKEQKW	9	Unmodified	_FDEDKEQKW_					0	0	0			REV__ENSG00000204740|ENST00000454679|MALRD1	REV__ENSG00000204740|ENST00000454679|MALRD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.26806640625	2	612.78021	1223.54587	0.41993	0.00025732	0.85119	0.00052159	1.2711	0.00077892	612.780819301991	64.162	0.70216	64.255	63.986	64.688	0.092888					56	25	3	0	0	0	0.25612	1	15863	15863		12.532	0	1	745780	+		8599	18962	4665	4665	11458	11458					-0.05696373978526026
FDELKLFKLA	10	Unmodified	_FDELKLFKLA_					0	0	0			REV__ENSG00000123143|ENST00000242783|PKN1	REV__ENSG00000123143|ENST00000242783|PKN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.26806640625	2	612.355357	1222.69616	0.42511	0.00026032	-0.65004	-0.00039805	-0.22493	-0.00013774	612.3549737877929	63.808	0.32898	63.901	63.737	64.066	0.09288					18	11	2	0	0	0	0.31942	1	15863	15863		10.824	4.1008	1	131560	+		8600	15181	4666	4666	11459	11459					0.09372017751093153
FDELKLFKLA	10	Unmodified	_FDELKLFKLA_					0	0	0			REV__ENSG00000123143|ENST00000242783|PKN1	REV__ENSG00000123143|ENST00000242783|PKN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.2679443359375	2	612.355357	1222.69616	0.47382	0.00029014	-0.51366	-0.00031454	-0.03984	-2.4396E-05	612.8568494841496	63.92	0.30747	63.91	63.794	64.101	-0.0095291					17	10	2	0	0	0	0.3179	1	15847	15847		10.074	4.3421	1	225400	+		8601	15181	4666	4666	11460	11460					0.09372017751093153
FDFCLFICF	9	Unmodified	_FDFCLFICF_					0	0	0		ENST00000369800.5_1_5:172118364-172118493:+|nuORF	ENST00000369800.5_1_5:172118364-172118493:+|nuORF	ENST00000369800.5_1_5:172118364-172118493:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.320556640625	2	577.756107	1153.49766	0.46029	0.00026594	0.2655	0.0001534	0.72579	0.00041933	577.7563029928893	83.373	0.29124	83.356	83.135	83.427	-0.017326					19	11	2	0	0	0	0.19839	1	21791	21791		28.487	5.7506	1	327420			8602	9784	4667	4667	11461	11461					-0.07294862423782433
FDFIVFLY	8	Unmodified	_FDFIVFLY_					0	0	0			REV__ENSG00000183862|ENST00000329903|CNGA2	REV__ENSG00000183862|ENST00000329903|CNGA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.8142700195312	2	532.278586	1062.54262	0.10165	5.4104E-05	-3.737	-0.0019891	-3.6353	-0.001935	532.7780694067806	14.793	0.30717	14.684	14.512	14.819	-0.10843					19	10	3	0	0	0	0.3439	1	873	873		2.8892	0.31174	1	63689	+		8603	18290	4668	4668	11462	11462					0.013850277054416438
FDFQSELDF	9	Unmodified	_FDFQSELDF_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2506103515625	2	574.250754	1146.48696	0.16783	9.6374E-05	-0.32952	-0.00018923	-0.1617	-9.2856E-05	574.2503679530096	97.911	0.63573	97.972	97.691	98.327	0.061523					173	75	3	0	0	0	0.17787	1	26233	26233		26.884	0	1	652010	+		8604	17179	4669	4669	11463	11463					-0.08042850272863689
FDHILSAIEDI	11	Unmodified	_FDHILSAIEDI_					0	0	0		nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.8873596191406	3	424.887199	1271.63977	-0.046473	-1.9746E-05	-0.19645	-8.3471E-05	-0.24293	-0.00010322	424.887375588714	29.782	1.6856	29.794	28.769	30.454	0.012266					244	58	7	0	0	0	0.37965	1	5301	5301		7.4771	0	1	1429600			8605	835	4670	4670	11464	11464					0.014813451237841946
FDIHVYHPY	9	Unmodified	_FDIHVYHPY_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.7814331054688	2	595.785099	1189.55564	0.26158	0.00015584	-3.1177	-0.0018575	-2.8561	-0.0017016	596.2862125753962	19.023	0.50103	19.023	18.71	19.211	0					22	17	2	0	0	0	0.34681	1	2114	2114		1.8442	0	1	28422			8606	1183	4671	4671	11465	11465					-0.03155141182469379
FDIHVYHPY	9	Unmodified	_FDIHVYHPY_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	595.785099	1189.55564	0.2405	0.00014329	-3.4363	-0.0020473	-3.1958	-0.001904	596.2862544576572	19.211	0.32215	19.156	18.961	19.283	-0.055693	0.066405	-0.00026788	NaN	1.8442	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30763			8607	1183	4671	4671							-0.03155141182469379
FDINFQKFPD	10	Unmodified	_FDINFQKFPD_					0	0	0			REV__ENSG00000165323|ENST00000525166|FAT3	REV__ENSG00000165323|ENST00000525166|FAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.8636169433594	3	424.208273	1269.60299	-0.23923	-0.00010148	-4.0001	-0.0016969	-4.2394	-0.0017984	424.20619262327193	31.54	0.71557	31.54	30.979	31.694	0					33	25	2	0	0	0	0.31942	1	5838	5838		3.5871	2.5156	1	121090	+		8608	17228	4672	4672	11466	11466					-0.0210290670215727
FDKDKKRL	8	Unmodified	_FDKDKKRL_					0	0	0			REV__ENSG00000136696|ENST00000259213|IL36B	REV__ENSG00000136696|ENST00000259213|IL36B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2669677734375	2	525.308741	1048.60293	0.15137	7.9516E-05	-1.6014	-0.00084122	-1.45	-0.0007617	525.3082695034142	12.969	0.19583	12.87	12.729	12.924	-0.099291					11	6	2	0	0	0	0.34408	1	264	264		2.3027	0.24298	1	31268	+		8609	15821	4673	4673	11467	11467					0.08057138088520333
FDKGLDRIF	9	Unmodified	_FDKGLDRIF_					0	0	0		ENSG00000260458|ENST00000567955|KCNJ18;ENSG00000184185|ENST00000583088|KCNJ12	ENSG00000260458|ENST00000567955|KCNJ18	ENSG00000260458|ENST00000567955|KCNJ18	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8130493164062	2	555.800749	1109.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.696	1	59.791	59.291	60.291	0.095093								0	0	0	0.19932	1	14547	14547		22.736	2.2827	1				8610	7434	4674	4674	11468	11468					0.03653431851603273
FDKRLNSK	8	Unmodified	_FDKRLNSK_					0	0	0			REV__ZNF510|p.I645Kfs*18|1|0.05|ENSG00000081386|chr9:96758896-96758897|-/ATAACTAGAAAATCCT|frameshift_variant	REV__ZNF510|p.I645Kfs*18|1|0.05|ENSG00000081386|chr9:96758896-96758897|-/ATAACTAGAAAATCCT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2979431152344	2	504.285266	1006.55598	0.21957	0.00011073	2.7358	0.0013796	2.9554	0.0014904	504.2867148703453	17.702	0.84405	17.642	17.298	18.142	-0.060429					42	29	2	0	0	0	0.34247	1	1621	1621		8.5933	2.8614	1	42020	+		8611	23362	4675	4675	11469	11469					0.0529627853737793
FDKSFICF	8	Unmodified	_FDKSFICF_					0	0	0			REV__ENST00000297540.4_1_5:125961365-125961620:+|nuORF	REV__ENST00000297540.4_1_5:125961365-125961620:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.29864501953125	2	503.738771	1005.46299	0.39813	0.00020055	1.5856	0.00079872	1.9837	0.00099927	503.7393602250546	17.06	0.68776	17	16.756	17.444	-0.060429					49	24	3	0	0	0	0.32435	1	1494	1494		23.148	3.7094	1	306980	+		8612	19803	4676	4676	11470	11470					-0.03952362240215734
FDKVQKKIK	9	Unmodified	_FDKVQKKIK_					0	0	0			REV__ENSG00000230873|ENST00000536551|STMND1	REV__ENSG00000230873|ENST00000536551|STMND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.76220703125	2	567.355691	1132.69683	0.31507	0.00017876	-0.14321	-8.1252E-05	0.17186	9.7506E-05	567.3556489421117	55.612	0.3904	55.593	55.408	55.798	-0.019081					22	14	2	0	0	0	0.25706	1	13330	13330		6.7232	1.9672	1	327310	+		8613	19131	4677	4677	11471	11471					0.13578857190805138
FDKVQKKIK	9	Unmodified	_FDKVQKKIK_					0	0	0			REV__ENSG00000230873|ENST00000536551|STMND1	REV__ENSG00000230873|ENST00000536551|STMND1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	567.355691	1132.69683	0.15244	8.649E-05	-0.048685	-2.7622E-05	0.10376	5.8868E-05	567.3555885032454	55.415	0.4376	55.415	55.221	55.658	0	-0.060035	6.1735E-05	NaN	10.074	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242580	+		8614	19131	4677	4677							0.13578857190805138
FDKVQKKIK	9	Unmodified	_FDKVQKKIK_					0	0	0			REV__ENSG00000230873|ENST00000536551|STMND1	REV__ENSG00000230873|ENST00000536551|STMND1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	567.355691	1132.69683	0.57954	0.0003288	-0.18394	-0.00010436	0.3956	0.00022444	567.3554611303184	55.346	0.4297	55.417	55.216	55.646	0.070885	-0.057959	-9.1744E-05	NaN	10.074	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299460	+		8615	19131	4677	4677							0.13578857190805138
FDLAYRKF	8	Unmodified	_FDLAYRKF_					0	0	0		nc|ENSG00000144366|Q9UBP9-3|GULP1;GULP1|p.T237Ifs*13|1|0.07|ENSG00000144366|chr2:188584362-188584363|-/AATTAGGGTAATATTT|frameshift_variant;nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1	nc|ENSG00000144366|Q9UBP9-3|GULP1	nc|ENSG00000144366|Q9UBP9-3|GULP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.8341674804688	2	530.284734	1058.55492	0.45042	0.00023885	0.52116	0.00027636	0.97158	0.00051521	530.2849518463713	69.095	0.55859	69.167	68.934	69.493	0.071938					38	19	3	0	0	0	0.34092	1	17517	17517		13.508	0.97634	1	277390			8616	4578	4678	4678	11472	11472					0.027980641684507646
FDLCLNRF	8	Unmodified	_FDLCLNRF_					0	0	0			REV__THE1B-int_dup1888|chr6:111282961-111284170:-|1.7370166059662973|0.0871552847339515|4.32|531.0|32|3|sense	REV__THE1B-int_dup1888|chr6:111282961-111284170:-|1.7370166059662973|0.0871552847339515|4.32|531.0|32|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.255615234375	2	514.25512	1026.49569	0.28827	0.00014825	0.29973	0.00015414	0.58801	0.00030239	514.2553659412491	82.223	1.5699	82.199	81.878	83.448	-0.02404					222	61	7	0	0	0	0.4397	1	21540	21540		9.3474	2.0582	1	10619000	+		8617	23325	4679	4679	11473	11473					-0.016501551173860207
FDLDWDTSSSS	11	Unmodified	_FDLDWDTSSSS_					0	0	0			REV__nc|ENSG00000133619|A5PL33-3|KRBA1	REV__nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.8379211425781	3	420.506935	1258.49898	0.18695	7.8615E-05	-2.075	-0.00087255	-1.888	-0.00079394	420.84080266600455	64.436	0.46124	64.436	64.238	64.699	0					50	16	4	0	0	0	0.3322	1	16033	16033		4.7159	0.30977	1	294270	+		8618	15628	4680	4680	11474	11474					-0.11993278320323952
FDLFWDEGMP	10	Unmodified	_FDLFWDEGMP_					0	0	0			REV__ENSG00000185974|ENST00000335678|GRK1	REV__ENSG00000185974|ENST00000335678|GRK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.593505859375	3	419.514597	1255.52196	-0.24839	-0.0001042	1.2257	0.00051418	0.97727	0.00040998	419.51511347515435	18.55	0.67488	18.492	18.171	18.846	-0.058174					41	23	3	0	0	0	0.3213	1	1963	1963		1.9064	0	1	76541	+		8619	18426	4681	4681	11475	11475					-0.09557930736559683
FDLLRVYWF	9	Unmodified	_FDLLRVYWF_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7	REV__ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2347106933594	3	420.225486	1257.65463	-0.044707	-1.8787E-05	3.4395	0.0014454	3.3948	0.0014266	420.22666963531617	43.069	0.13091	43.153	43.035	43.166	0.083996					6	4	2	0	0	0	0.23775	1	9422	9422		12.241	0	1	150390	+		8620	14081	4682	4682	11476	11476					0.036108817824015205
FDLLRVYWF	9	Unmodified	_FDLLRVYWF_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7	REV__ENSG00000092439|ENST00000646667|TRPM7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	420.225486	1257.65463	-0.044707	-1.8787E-05	3.4395	0.0014454	3.3948	0.0014266	420.22666963531617	43.069	0.13091	43.153	43.035	43.166	0.083996	-0.020044	0.00019249	NaN	12.241	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150390	+		8621	14081	4682	4682							0.036108817824015205
FDLMSDQIF	9	Unmodified	_FDLMSDQIF_					0	0	0			REV__nc|ENSG00000135387|Q14444-2|CAPRIN1	REV__nc|ENSG00000135387|Q14444-2|CAPRIN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.239501953125	2	558.257525	1114.5005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.606	1	65.606	65.106	66.106	0								0	0	0	0.17683	1	16375	16375		28.487	8.0332	1		+		8622	15739	4683	4683	11477	11477					-0.05217315765275998
FDLRSQVTK	9	Unmodified	_FDLRSQVTK_					0	0	0			REV__ENSG00000136816|ENST00000259339|TOR1B	REV__ENSG00000136816|ENST00000259339|TOR1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.8255004882812	2	547.303655	1092.59276	0.57459	0.00031447	-1.8859	-0.0010322	-1.3113	-0.00071768	547.3023530785235	29.347	0.87117	29.359	29.161	30.032	0.012266					50	29	2	0	0	0	0.22674	1	5264	5264		22.736	0	1	192940	+		8623	15827	4684	4684	11478	11478					0.050165303632638825
FDLSLCLDF	9	Unmodified	_FDLSLCLDF_					0	0	0			REV__ENST00000477216.1_1_3:170077681-170077735:+|nuORF	REV__ENST00000477216.1_1_3:170077681-170077735:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.7724609375	2	536.754618	1071.49468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.779	1	79.779	79.279	80.279	0								0	0	0	0.20238	1	20704	20704		21.747	1.293	1		+		8624	21434	4685	4685	11479	11479					-0.03820414276970041
FDLTEDVIFR	10	Unmodified	_FDLTEDVIFR_					0	0	0			REV__ENST00000459765.1_1_1:109824234-109825347:-|nuORF	REV__ENST00000459765.1_1_1:109824234-109825347:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.8829345703125	3	418.883677	1253.6292	0.026846	1.1245E-05	0.32816	0.00013746	0.35501	0.00014871	419.2182526508281	40.698	0.75689	40.798	40.505	41.262	0.099403					75	27	4	0	0	0	0.35624	1	8668	8668		11.518	2.5416	1	1308000	+		8625	15658	4686	4686	11480	11480					0.012533624693105594
FDLYAQKIDAL	11	Unmodified	_FDLYAQKIDAL_					0	0	0			REV__ENSG00000213551|ENST00000372950|DNAJC9	REV__ENSG00000213551|ENST00000372950|DNAJC9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.5946044921875	3	432.899328	1295.67615	-0.1915	-8.29E-05	-2.7876	-0.0012068	-2.9791	-0.0012897	432.8979190347786	25.1	0.15633	25.044	24.946	25.102	-0.055931					8	5	2	0	0	0	0.32774	1	3945	3945		9.7643	0	1	41911	+		8626	19039	4687	4687	11481	11481					0.04014222020464331
FDLYHAYLI	9	Unmodified	_FDLYHAYLI_					0	0	0			REV__ENSG00000185002|ENST00000332958|RFX6	REV__ENSG00000185002|ENST00000332958|RFX6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.8265380859375	2	577.797675	1153.5808	0.48034	0.00027754	-0.79739	-0.00046073	-0.31705	-0.00018319	577.7974691248368	51.091	0.74304	51.091	50.738	51.481	0					59	27	3	0	0	0	0.25066	1	11814	11814		11.64	0.81637	1	522120	+		8627	18348	4688	4688	11482	11482					0.010149136200880093
FDMNHPLWF	9	Unmodified	_FDMNHPLWF_					0	0	0			REV__ENSG00000099821|ENST00000588649|POLRMT	REV__ENSG00000099821|ENST00000588649|POLRMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.28515625	2	603.773677	1205.5328	0.089145	5.3823E-05	0.4665	0.00028166	0.55564	0.00033548	603.7740862876093	28.457	0.56375	28.457	28.242	28.805	0.0004673					30	19	2	0	0	0	0.26031	1	5010	5010		3.5965	0.8613	1	134330	+		8628	14137	4689	4689	11483	11483					-0.061744835716126545
FDNRYFTF	8	Unmodified	_FDNRYFTF_					0	0	0		ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2684936523438	2	555.256174	1108.49779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.025	1	71	70.5	71.5	-0.024872								0	0	0	0.34229	1	18019	18019		18.135	5.6034	1				8629	2330	4690	4690	11484	11484					-0.052114031079327106
FDNVTISLT	9	Unmodified	_FDNVTISLT_					0	0	0		nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-3|PKD1L2	nc|ENSG00000166473|Q7Z442|PKD1L2	nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.27691650390625	2	505.263665	1008.51278	0.16026	8.0976E-05	0.514	0.00025971	0.67427	0.00034068	505.26360474710174	76.203	2.4655	76.257	75.756	78.221	0.053421					257	88	7	0	0	0	0.23767	1	20029	20029		18.146	4.2403	1	9333800			8630	12817	4691	4691	11485	11485					0.008860439694331035
FDNVTNKDSP	10	Unmodified	_FDNVTNKDSP_					0	0	0		ENSG00000133138|ENST00000357242|TBC1D8B;TBC1D8B|p.L930Yfs*38|1|0.07|ENSG00000133138|chrX:106868452-106868452|T/-|frameshift_variant	ENSG00000133138|ENST00000357242|TBC1D8B	ENSG00000133138|ENST00000357242|TBC1D8B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.763916015625	2	568.76456	1135.51457	0.42015	0.00023897	-1.2178	-0.00069263	-0.79763	-0.00045366	568.7636719332089	29.812	1.3742	29.824	29.19	30.564	0.012264					87	47	2	0	0	0	0.35231	1	5365	5365		12.241	2.8575	1	276930			8631	3698	4692	4692	11486	11486					-0.047769470126240776
FDPEQHPNHL	10	Unmodified	_FDPEQHPNHL_					0	0	0		nc|ENSG00000205560|Q92523-4|CPT1B;nc|ENSG00000205560|Q92523-3|CPT1B;ENSG00000205560|ENST00000312108|CPT1B	nc|ENSG00000205560|Q92523-4|CPT1B	nc|ENSG00000205560|Q92523-4|CPT1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.5001525878906	3	411.859755	1232.55744	0.71576	0.00029479	-1.041	-0.00042876	-0.32527	-0.00013396	411.8592848487082	56.282	0.48218	56.361	56.146	56.628	0.078674					28	17	2	0	0	0	0.31358	1	13558	13558		3.0723	0.44103	1	470970			8632	8295	4693	4693	11487	11487					-0.049541321645165226
FDPISLRE	8	Unmodified	_FDPISLRE_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7696533203125	2	488.758549	975.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.442	1	23.354	22.854	23.854	-0.087608								0	0	0	0.29147	1	3452	3452		30.225	8.4782	1		+		8633	13757	4694	4694	11488	11488					0.013814810348435458
FDPKVFTFGL	10	Unmodified	_FDPKVFTFGL_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8339233398438	2	585.813325	1169.6121	0.6037	0.00035365	0.24314	0.00014243	0.84684	0.00049609	585.8132983794044	83.904	0.85394	83.904	83.228	84.082	0					86	33	3	0	0	0	0.3641	2	21784	21784;21832		10.074	0	1	381160			8634	2429	4695	4695	11489;11490	11489					0.034074866542141535
FDPRWVLS	8	Unmodified	_FDPRWVLS_					0	0	0			REV__nc|ENSG00000128965|Q9BUX1-2|CHAC1	REV__nc|ENSG00000128965|Q9BUX1-2|CHAC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2851867675781	2	510.269084	1018.52362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.217	1	37.31	36.81	37.81	0.093018								0	0	0	0.35251	1	7633	7633		13.508	0	1		+		8635	15395	4696	4696	11491	11491					0.015094911343794593
FDQDVYWA	8	Unmodified	_FDQDVYWA_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2471923828125	2	522.227082	1042.43961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.472	1	56.472	55.972	56.972	0								0	0	0	0.068129	1	13561	13561		67.344	12.57	1				8636	1282	4697	4697	11492	11492					-0.0799108475318917
FDQDVYWA	8	Unmodified	_FDQDVYWA_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2470092773438	2	522.227082	1042.43961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.62	1	56.62	56.12	57.12	0								0	0	0	0.068129	1	13608	13608		67.344	16.489	1				8637	1282	4697	4697	11493	11493					-0.0799108475318917
FDQDVYWA	8	Unmodified	_FDQDVYWA_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2467651367188	2	522.227082	1042.43961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.465	1	56.544	56.044	57.044	0.078674								0	0	0	0.035566	1	13555	13555		77.984	13.748	1				8638	1282	4697	4697	11494	11494					-0.0799108475318917
FDQDVYWA	8	Unmodified	_FDQDVYWA_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2468872070312	2	522.227082	1042.43961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.53	1	56.609	56.109	57.109	0.078674								0	0	0	0.035566	1	13575	13575		77.984	23.211	1				8639	1282	4697	4697	11495	11495					-0.0799108475318917
FDQDVYWA	8	Unmodified	_FDQDVYWA_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2470092773438	2	522.227082	1042.43961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.575	1	56.653	56.153	57.153	0.078674								0	0	0	0.035566	1	13590	13590		77.984	23.211	1				8640	1282	4697	4697	11496	11496					-0.0799108475318917
FDRHFRTLK	9	Unmodified	_FDRHFRTLK_					0	0	0		nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1;SYNJ1|p.P1238Lfs*21|1|0.29|ENSG00000159082|chr21:32639774-32639774|A/-|frameshift_variant;nc|ENSG00000159082|O43426-5|SYNJ1;SYNJ1|p.F819Lfs*49|1|0.04|ENSG00000159082|chr21:32657837-32657838|-/GGGAATGACAT|frameshift_variant	nc|ENSG00000159082|O43426-4|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.3375854492188	2	610.338364	1218.66217	0.092105	5.6215E-05	-0.99633	-0.0006081	-0.90422	-0.00055188	610.3376850708319	67.134	0.50052	67.117	66.893	67.393	-0.016296					37	16	3	0	0	0	0.30064	1	16886	16886		8.7454	2.0222	1	337200			8641	5386	4698	4698	11497	11497					0.06159034102711303
FDRQHEPTFG	10	Unmodified	_FDRQHEPTFG_					0	0	0			REV__ENST00000459805.5_1_1:155184905-155186549:-|nuORF	REV__ENST00000459805.5_1_1:155184905-155186549:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5003662109375	3	411.859755	1232.55744	0.83992	0.00034593	-1.0239	-0.00042172	-0.18403	-7.5794E-05	411.8593570046958	56.557	0.54005	56.538	56.352	56.892	-0.019077					27	19	2	0	0	0	0.318	1	13668	13668		1.9064	0.31409	1	656720	+		8642	17999	4699	4699	11498	11498					-0.0495413216453926
FDRYSVFRPG	10	Unmodified	_FDRYSVFRPG_					0	0	0		ENSG00000109854|ENST00000451739|HTATIP2;nc|ENSG00000109854|Q9BUP3-3|HTATIP2	ENSG00000109854|ENST00000451739|HTATIP2	ENSG00000109854|ENST00000451739|HTATIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3146362304688	2	622.314554	1242.61456	0.34882	0.00021708	-0.46738	-0.00029086	-0.11855	-7.3777E-05	622.3143282194346	20.396	1.0554	20.396	20.113	21.169	0					104	37	4	0	0	0	0.411	1	2684	2684		1.1933	0	1	1218400			8643	2276	4700	4700	11499	11499					0.0029533511183217342
FDSGFLPRA	9	Unmodified	_FDSGFLPRA_					0	0	0			REV__ENSG00000170604|ENST00000302165|IRF2BP1	REV__ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2725830078125	2	505.258717	1008.50288	0.31899	0.00016117	1.0219	0.00051632	1.3409	0.0006775	505.7608671104533	40.976	0.4227	41.066	40.85	41.273	0.090252					20	15	2	0	0	0	0.22188	1	8811	8811		20.454	0	1	264260	+		8644	17588	4701	4701	11500	11500					-0.0010309924530247372
FDSHLNPLL	9	Unmodified	_FDSHLNPLL_					0	0	0			REV__ENST00000258349.8_1_1:173961995-173962157:-|nuORF	REV__ENST00000258349.8_1_1:173961995-173962157:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2639770507812	2	528.279649	1054.54475	0.8251	0.00043588	0.17492	9.2408E-05	1	0.00052829	528.2796446727687	47.097	0.82095	47.097	46.813	47.634	0					80	28	4	0	0	0	0.18803	1	10733	10733		25.399	3.6527	1	3511200	+		8645	19567	4702	4702	11501	11501					0.0196545644323578
FDSIVALLSF	10	Unmodified	_FDSIVALLSF_					0	0	0		nc|ENSG00000168356|Q9UI33-2|SCN11A;nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A	nc|ENSG00000168356|Q9UI33-2|SCN11A	nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.318359375	2	556.305332	1110.59611	0.12235	6.8064E-05	1.3524	0.00075233	1.4747	0.0008204	556.3062423663204	16.821	0.55386	16.707	16.56	17.114	-0.11434					38	19	3	0	0	0	0.32054	1	1552	1552		3.2813	1.4371	1	103990			8646	6270	4703	4703	11502	11502					0.045237804172757023
FDSYPLSFP	9	Unmodified	_FDSYPLSFP_					0	0	0			REV__ENSG00000105364|ENST00000253099|MRPL4	REV__ENSG00000105364|ENST00000253099|MRPL4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7722778320312	2	536.752933	1071.49131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.899	1	79.87	79.37	80.37	-0.028931								0	0	0	0.20639	1	20725	20725		20.454	1.0146	1		+		8647	14452	4704	4704	11503	11503					-0.04157341059294595
FDTMYDGPSYS	11	Unmodified	_FDTMYDGPSYS_					0	0	0		PPP1R9A|p.K769Ifs*12|1|0.11|ENSG00000158528|chr7:95250230-95250231|-/T|frameshift_variant;nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;PPP1R9A|p.M1062Wfs*8|1|0.24|ENSG00000158528|chr7:95290187-95290187|A/-|frameshift_variant;ENSG00000158528|ENST00000433360|PPP1R9A	PPP1R9A|p.K769Ifs*12|1|0.11|ENSG00000158528|chr7:95250230-95250231|-/T|frameshift_variant	PPP1R9A|p.K769Ifs*12|1|0.11|ENSG00000158528|chr7:95250230-95250231|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.3744506835938	2	641.750261	1281.48597	0.4644	0.00029803	-0.73752	-0.0004733	-0.27312	-0.00017527	642.251150092558	65.525	0.49326	65.514	65.257	65.75	-0.011337					19	17	2	0	0	0	0.33149	1	16406	16406		5.2969	2.0156	1	160310			8648	5360	4705	4705	11504	11504					-0.14351432704074796
FDTVAKRFK	9	Unmodified	_FDTVAKRFK_					0	0	0			REV__ENST00000369426.9_1_1:119575536-119588262:-|nuORF	REV__ENST00000369426.9_1_1:119575536-119588262:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.318359375	2	556.316566	1110.61858	0.12345	6.868E-05	2.6884	0.0014956	2.8119	0.0015643	556.3181633249019	17.179	0.30893	17.062	16.828	17.137	-0.11739					19	10	2	0	0	0	0.34681	1	1552	1552		1.8442	0.36234	1	51116	+		8649	14946	4706	4706	11505	11505					0.0676942460556802
FDTWPPALF	9	Unmodified	_FDTWPPALF_					0	0	0			REV__ENST00000429967.2_1_X:128781414-128781876:-|nuORF	REV__ENST00000429967.2_1_X:128781414-128781876:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.2695922851562	2	547.271293	1092.52803	0.50842	0.00027824	-1.8431	-0.0010087	-1.3347	-0.00073043	547.2704444592524	75.738	1.1356	75.79	75.024	76.16	0.052361					130	41	5	0	0	0	0.11517	1	19453	19453		36.044	5.4077	1	1228100	+		8650	20938	4707	4707	11506	11506					-0.014530444427464317
FDVALSKRQ	9	Unmodified	_FDVALSKRQ_					0	0	0			REV__ENSG00000171094|ENST00000389048|ALK	REV__ENSG00000171094|ENST00000389048|ALK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.814208984375	2	532.298373	1062.58219	0.19351	0.00010301	2.5343	0.001349	2.7278	0.001452	532.2993727595942	14.749	0.28374	14.749	14.561	14.845	0					14	9	2	0	0	0	0.25938	1	834	834		4.3292	0	1	37995	+		8651	17618	4708	4708	11507	11507					0.05340547708851773
FDVARLRAA	9	Unmodified	_FDVARLRAA_					0	0	0			REV__ENST00000528296.5_1_8:146015816-146017457:-|nuORF	REV__ENST00000528296.5_1_8:146015816-146017457:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.79351806640625	2	509.793258	1017.57196	0.19219	9.7976E-05	0.27196	0.00013864	0.46415	0.00023662	509.79334022449524	28.573	0.76437	28.573	28.241	29.006	0					51	26	3	0	0	0	0.19747	2	4984	4984;5030		24.021	4.3045	1	400400	+		8652	16931	4709	4709	11508;11509	11508					0.06387984774255528
FDVARLRAA	9	Unmodified	_FDVARLRAA_					0	0	0			REV__ENST00000528296.5_1_8:146015816-146017457:-|nuORF	REV__ENST00000528296.5_1_8:146015816-146017457:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7933349609375	2	509.793258	1017.57196	0.14489	7.3863E-05	0.36414	0.00018563	0.50902	0.0002595	509.79340958125914	28.578	0.65043	28.574	28.333	28.984	-0.0042572					47	22	3	0	0	0	0.25989	1	5033	5033		14.838	0.93222	1	494010	+		8653	16931	4709	4709	11510	11510					0.06387984774255528
FDVARLRAA	9	Unmodified	_FDVARLRAA_					0	0	0			REV__ENST00000528296.5_1_8:146015816-146017457:-|nuORF	REV__ENST00000528296.5_1_8:146015816-146017457:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7931823730469	2	509.793258	1017.57196	0.022372	1.1405E-05	0.60282	0.00030731	0.62519	0.00031872	509.7934791165497	28.615	0.70169	28.615	28.294	28.996	0.0004673					54	24	3	0	0	0	0.22188	2	4972	4972;5015		20.454	3.5113	1	465880	+		8654	16931	4709	4709	11511;11512	11511					0.06387984774255528
FDVARLRAA	9	Unmodified	_FDVARLRAA_					0	0	0			REV__ENST00000528296.5_1_8:146015816-146017457:-|nuORF	REV__ENST00000528296.5_1_8:146015816-146017457:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	509.793258	1017.57196	0.022372	1.1405E-05	0.60282	0.00030731	0.62519	0.00031872	509.7934791165497	28.615	0.70169	28.615	28.294	28.996	0.0004673	0.028004	0.00019473	NaN	24.021	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465880	+		8655	16931	4709	4709							0.06387984774255528
FDVFLRHL	8	Unmodified	_FDVFLRHL_					0	0	0		nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000515773.5_1_6:43164260-43192180:+|nuORF	nc|ENSG00000112659|Q8IWT3-3|CUL9	nc|ENSG00000112659|Q8IWT3-3|CUL9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3117065429688	2	523.792727	1045.5709	0.46033	0.00024112	-2.724	-0.0014268	-2.2636	-0.0011857	524.2935237845302	32.795	0.21974	32.85	32.765	32.985	0.054371					11	7	2	0	0	0	0.34319	1	6269	6269		5.7604	0	1	68029			8656	2449	4710	4710	11513	11513					0.049937704053718335
FDVMCCSASIL	11	Unmodified	_FDVMCCSASIL_					0	0	0		ENSG00000158748|ENST00000289753|HTR6	ENSG00000158748|ENST00000289753|HTR6	ENSG00000158748|ENST00000289753|HTR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.31640625	2	594.75852	1187.50249	0.29636	0.00017626	-0.062839	-3.7374E-05	0.23352	0.00013889	594.7586381113938	61.51	0.42254	61.51	61.413	61.836	0					23	15	2	0	0	0	0.32996	1	15166	15166		8.1555	2.4237	1	211950			8657	5371	4711	4711	11514	11514					-0.08376346343311525
FDVMCCSASIL	11	Unmodified	_FDVMCCSASIL_					0	0	0		ENSG00000158748|ENST00000289753|HTR6	ENSG00000158748|ENST00000289753|HTR6	ENSG00000158748|ENST00000289753|HTR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.3170776367188	2	594.75852	1187.50249	0.10547	6.2732E-05	0.29353	0.00017458	0.39901	0.00023731	594.7587477764407	61.512	0.34903	61.503	61.35	61.699	-0.0094528					16	12	2	0	0	0	0.32996	1	15135	15135		8.1555	1.9497	1	230620			8658	5371	4711	4711	11515	11515					-0.08376346343311525
FDYFEEYFA	9	Unmodified	_FDYFEEYFA_					0	0	0		ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.50048828125	3	410.837845	1229.49171	0.12041	4.9467E-05	-0.71444	-0.00029352	-0.59404	-0.00024405	411.1717996601514	56.541	0.47895	56.541	56.37	56.849	0					29	17	2	0	0	0	0.25612	1	13578	13578		8.1555	8.1555	1	337430			8659	4197	4712	4712	11516	11516					-0.11385966130092129
FEAHEVLNLH	10	Unmodified	_FEAHEVLNLH_					0	0	0		ENSG00000173950|ENST00000310380|XXYLT1	ENSG00000173950|ENST00000310380|XXYLT1	ENSG00000173950|ENST00000310380|XXYLT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2349548339844	3	403.540134	1207.59857	-0.31271	-0.00012619	-0.4102	-0.00016553	-0.72291	-0.00029172	403.874341081233	15.716	0.28812	15.716	15.528	15.816	0					12	9	2	0	0	0	0.32137	1	1065	1065		1.7423	0.14999	1	21798			8660	6764	4713	4713	11517	11517					0.003076288749525702
FECWFMLTF	9	Unmodified	_FECWFMLTF_					0	0	0			REV__ENSG00000171227|ENST00000306406|TMEM37	REV__ENSG00000171227|ENST00000306406|TMEM37	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.8874206542969	3	408.513651	1222.51912	-0.39336	-0.00016069	3.8329	0.0015658	3.4395	0.0014051	408.85022271984747	13.661	0.23149	13.661	13.509	13.74	0					11	7	2	0	0	0	0.26257	1	456	456		0.23584	0.095952	1	10770	+		8661	17629	4714	4714	11518	11518					-0.08323477395060763
FECWFMLTF	9	Unmodified	_FECWFMLTF_					0	0	0			REV__ENSG00000171227|ENST00000306406|TMEM37	REV__ENSG00000171227|ENST00000306406|TMEM37	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	408.513651	1222.51912	-0.35722	-0.00014593	2.0605	0.00084173	1.7032	0.0006958	408.51447220682815	13.408	0.17045	13.341	13.245	13.416	-0.067496	-0.18899	-0.00033503	NaN	0.23584	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11981	+		8662	17629	4714	4714							-0.08323477395060763
FEDEEEAELL	10	Unmodified	_FEDEEEAELL_					0	0	0			REV__ENST00000471423.1_1_1:151158258-151162597:-|nuORF	REV__ENST00000471423.1_1_1:151158258-151162597:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.2691040039062	2	612.269341	1222.52413	0.22532	0.00013796	-0.43895	-0.00026876	-0.21364	-0.0001308	612.2690155054903	74.019	1.9593	74.072	73.494	75.454	0.052361					210	69	4	0	0	0	0.38515	2	18848	18848;19268		6.2058	6.2058	1	2345100	+		8663	17041	4715	4715	11519;11520	11519					-0.07823223517743827
FEDEMAMII	9	Unmodified	_FEDEMAMII_					0	0	0			REV__ENSG00000004779|ENST00000007516|NDUFAB1	REV__ENSG00000004779|ENST00000007516|NDUFAB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.31298828125	2	549.745936	1097.47732	0.39852	0.00021909	3.896	0.0021418	4.2945	0.0023609	549.7482291888327	76.754	0.72803	76.754	76.283	77.011	0					46	26	2	0	0	0	0.21905	1	19706	19706		23.148	1.4018	1	107400	+		8664	13335	4716	4716	11521	11521					-0.06752077874239149
FEDIEDKF	8	Unmodified	_FEDIEDKF_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.7388305664062	2	521.740022	1041.46549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.727	1	45.792	45.292	46.292	0.065048								0	0	0	0.35251	1	10234	10234		13.508	0.97634	1		+		8665	17631	4717	4717	11522	11522					-0.05358235301582681
FEDRLKEE	8	Unmodified	_FEDRLKEE_					0	0	0		nc|nan|Q8IYJ2|C10orf67;ENSG00000179133|ENST00000636213|C10orf67;nc|nan|Q8IYJ2-2|C10orf67	nc|nan|Q8IYJ2|C10orf67	nc|nan|Q8IYJ2|C10orf67	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3173828125	2	533.264196	1064.51384	0.046853	2.4985E-05	1.7883	0.00095363	1.8352	0.00097862	533.2650829195517	12.672	0.18268	12.573	12.46	12.643	-0.099291					6	5	2	0	0	0	0.34408	1	167	167		2.3027	0	1	9560.2			8666	7105	4718	4718	11523	11523					-0.015837416616705013
FEDRLKEE	8	Unmodified	_FEDRLKEE_					0	0	0		nc|nan|Q8IYJ2|C10orf67;ENSG00000179133|ENST00000636213|C10orf67;nc|nan|Q8IYJ2-2|C10orf67	nc|nan|Q8IYJ2|C10orf67	nc|nan|Q8IYJ2|C10orf67	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	533.264196	1064.51384	0.033651	1.7945E-05	2.8963	0.0015445	2.93	0.0015624	533.2650074611092	12.717	0.15402	12.65	12.548	12.702	-0.067496	0.038539	0.0010415	NaN	2.3027	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14246			8667	7105	4718	4718							-0.015837416616705013
FEDYGCTCRF	10	Unmodified	_FEDYGCTCRF_					0	0	0		ENSG00000253117|ENST00000254627|OC90;nc|ENSG00000253117|Q02509-3|OC90	ENSG00000253117|ENST00000254627|OC90	ENSG00000253117|ENST00000254627|OC90	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.7426147460938	2	620.741716	1239.46888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.982	1	48.03	47.53	48.53	0.047523								0	0	0	0.3629	1	10940	10940		9.3831	0	1				8668	8600	4719	4719	11524	11524					-0.1412763179087051
FEDYGCTCRF	10	Unmodified	_FEDYGCTCRF_					0	0	0		ENSG00000253117|ENST00000254627|OC90;nc|ENSG00000253117|Q02509-3|OC90	ENSG00000253117|ENST00000254627|OC90	ENSG00000253117|ENST00000254627|OC90	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.7420043945312	2	620.741716	1239.46888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.889	1	47.933	47.433	48.433	0.04332								0	0	0	0.35611	1	10902	10902		12.241	0	1				8669	8600	4719	4719	11525	11525					-0.1412763179087051
FEEEKAFWKKL	11	Unmodified	_FEEEKAFWKKL_					0	0	0			REV__ENSG00000197140|ENST00000379907|ADAM32	REV__ENSG00000197140|ENST00000379907|ADAM32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.59417724609375	3	485.594127	1453.76055	0.24056	0.00011682	0.053698	2.6076E-05	0.29426	0.00014289	485.92849478073447	24.281	1.1732	24.209	23.728	24.901	-0.072559					123	39	5	0	0	0	0.46704	1	3644	3644		2.4348	2.4348	1	569220	+		8670	18713	4720	4720	11526	11526					0.05182172837203325
FEEEVPRIF	9	Unmodified	_FEEEVPRIF_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.2977294921875	2	583.298039	1164.58152	0.30519	0.00017802	-0.70419	-0.00041075	-0.399	-0.00023274	583.2975606491466	71.6	0.73997	71.657	71.43	72.17	0.056572					40	26	2	0	0	0	0.2322	1	18240	18240		20.454	20.454	1	544730			8671	1172	4721	4721	11527	11527					0.005817082691237374
FEEEVPRIF	9	Unmodified	_FEEEVPRIF_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	583.298039	1164.58152	0.36417	0.00021242	-0.63722	-0.00037169	-0.27305	-0.00015927	583.2975300712484	71.728	0.49655	71.728	71.521	72.017	0	0.021532	4.9211E-05	NaN	14.838	33	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	466270			8672	1172	4721	4721							0.005817082691237374
FEEEVPRIF	9	Unmodified	_FEEEVPRIF_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	583.298039	1164.58152	0.41448	0.00024177	-0.69245	-0.00040391	-0.27797	-0.00016214	583.2975321230897	71.761	0.63324	71.734	71.537	72.171	-0.027275	0.027589	-1.5219E-05	NaN	14.838	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	545800			8673	1172	4721	4721							0.005817082691237374
FEEEWNNI	8	Unmodified	_FEEEWNNI_					0	0	0		ENST00000594883.1_1_19:57687347-57687830:+|nuORF	ENST00000594883.1_1_19:57687347-57687830:+|nuORF	ENST00000594883.1_1_19:57687347-57687830:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.29052734375	2	540.735271	1079.45599	0.58569	0.0003167	-1.6035	-0.00086706	-1.0178	-0.00055035	540.7343906717869	56.575	0.53873	56.575	56.423	56.962	0					25	19	2	0	0	0	0.33993	1	13587	13587		16.942	3.0362	1	253680			8674	12218	4722	4722	11528	11528					-0.08056003587103078
FEELPYKLRPF	11	Unmodified	_FEELPYKLRPF_					0	0	0			REV__ENSG00000183044|ENST00000268251|ABAT	REV__ENSG00000183044|ENST00000268251|ABAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.26214599609375	3	480.262489	1437.76564	0.14667	7.0439E-05	-0.63712	-0.00030599	-0.49046	-0.00023555	480.2623212037272	24.688	1.5519	24.688	24.162	25.714	0					196	52	5	0	0	0	0.44088	2	3722	3722;3770		5.8681	2.5485	1	1942100	+		8675	18233	4723	4723	11529;11530	11529					0.06426476699834893
FEELPYKLRPF	11	Unmodified	_FEELPYKLRPF_					0	0	0			REV__ENSG00000183044|ENST00000268251|ABAT	REV__ENSG00000183044|ENST00000268251|ABAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.26251220703125	3	480.262489	1437.76564	0.163	7.8282E-05	-0.73823	-0.00035455	-0.57523	-0.00027626	480.26226475095	24.814	1.4491	24.758	24.283	25.732	-0.055931					173	50	5	0	0	0	0.44088	1	3792	3792		5.8681	1.1522	1	2644400	+		8676	18233	4723	4723	11531	11531					0.06426476699834893
FEELTKLLSK	10	Unmodified	_FEELTKLLSK_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.56964111328125	3	403.23594	1206.68599	-0.38206	-0.00015406	-1.6935	-0.00068286	-2.0755	-0.00083692	403.57002495555236	15.588	0.69332	15.478	15.093	15.786	-0.10981					70	23	4	0	0	0	0.31969	1	1089	1089		5.7834	3.0482	1	78564			8677	2153	4724	4724	11532	11532					0.09091410025848745
FEEPSRRR	8	Unmodified	_FEEPSRRR_					0	0	0			REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7837524414062	2	538.783422	1075.55229	0.15167	8.1717E-05	0.61902	0.00033352	0.77069	0.00041523	538.7836258166857	13.827	0.28701	13.761	13.602	13.889	-0.066068					24	9	3	0	0	0	0.45431	1	557	557		4.3292	4.3292	1	160300	+		8678	14638	4725	4725	11533	11533					0.017536087635107833
FEEQNESKF	9	Unmodified	_FEEQNESKF_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.2581176757812	2	579.259111	1156.50367	0.29342	0.00016996	-1.4442	-0.00083659	-1.1508	-0.00066662	579.2580857360331	60.995	1.0649	61.092	60.752	61.817	0.096985					65	38	2	0	0	0	0.20626	2	14922	14922;15032		22.736	3.4793	1	1541500	+		8679	16233	4726	4726	11534;11535	11534					-0.06832349386900205
FEEQNESKF	9	Unmodified	_FEEQNESKF_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.2588500976562	2	579.259111	1156.50367	0.31354	0.00018162	-1.326	-0.00076812	-1.0125	-0.0005865	579.2581909257569	61.051	0.91447	61.041	60.759	61.674	-0.0094566					51	33	2	0	0	0	0.20626	1	14949	14949		22.736	4.5899	1	2744000	+		8680	16233	4726	4726	11536	11536					-0.06832349386900205
FEEYRFFP	8	Unmodified	_FEEYRFFP_					0	0	0		CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF;nc|ENSG00000125107|A5YKK6-4|CNOT1;CNOT1|p.R1683Qfs*32|1|0.4|ENSG00000125107|chr16:58538855-58538859|GTAGC/-|frameshift_variant	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8167724609375	2	567.766374	1133.5182	-0.4273	-0.00024261	0.32533	0.00018471	-0.10197	-5.7894E-05	567.766425359812	34.44	0.8684	34.44	34.193	35.062	0					57	30	3	0	0	0	0.3366	1	6872	6872		18.135	18.135	1	1235800			8681	188	4727	4727	11537	11537					-0.0432223244808938
FEFFRFLNWRK	11	Unmodified	_FEFFRFLNWRK_					0	0	0		ENST00000265339.6_1_5:133726266-133726425:+|nuORF	ENST00000265339.6_1_5:133726266-133726425:+|nuORF	ENST00000265339.6_1_5:133726266-133726425:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.760986328125	3	530.617377	1588.8303	0.44932	0.00023842	0.75703	0.0004017	1.2064	0.00064011	530.6189509173756	37.386	0.359	37.473	37.275	37.634	0.087406					21	12	2	0	0	0	0.33334	1	7698	7698		1.2148	0.76031	1	195800			8682	9044	4728	4728	11538	11538					0.05944096296502721
FEFRQQQL	8	Unmodified	_FEFRQQQL_					0	0	0		ENSG00000165905|ENST00000401752|LARGE2;ENST00000528236.5_1_11:45947679-45949381:+|nuORF;ENST00000530437.5_1_11:45947935-45950393:+|nuORF	ENSG00000165905|ENST00000401752|LARGE2	ENSG00000165905|ENST00000401752|LARGE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7660522460938	2	548.282723	1094.55089	0.32113	0.00017607	0.87683	0.00048075	1.198	0.00065682	548.2832188280465	28.889	0.46511	28.895	28.585	29.05	0.0055599					23	16	2	0	0	0	0.34247	1	5013	5013		8.5933	0.68312	1	95299			8683	6010	4729	4729	11539	11539					0.00739974674752375
FEGYRSMF	8	Unmodified	_FEGYRSMF_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3165893554688	2	518.731477	1035.4484	0.3908	0.00020272	0.50312	0.00026098	0.89392	0.0004637	518.7316248565741	79.767	0.42316	79.767	79.612	80.035	0					25	15	2	0	0	0	0.34319	1	20740	20740		5.7604	0	1	77424			8684	12721	4730	4730	11540	11540					-0.06790434388358335
FEHLAYWQIQF	11	Unmodified	_FEHLAYWQIQF_					0	0	0		nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-5|PKD2;ENSG00000118762|ENST00000237596|PKD2	nc|ENSG00000118762|Q13563-4|PKD2	nc|ENSG00000118762|Q13563-4|PKD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2553405761719	3	494.578588	1480.71394	0.38443	0.00019013	-0.78135	-0.00038644	-0.39692	-0.00019631	494.5783070025816	32.901	0.77583	32.956	32.645	33.421	0.055309					80	27	4	0	0	0	0.33287	1	6415	6415		2.8433	1.7335	1	1253700			8685	2843	4731	4731	11541	11541					-0.007192669940650376
FEIEREAFI	9	Unmodified	_FEIEREAFI_					0	0	0		ENSG00000129673|ENST00000392492|AANAT;nc|ENSG00000129673|Q16613-2|AANAT	ENSG00000129673|ENST00000392492|AANAT	ENSG00000129673|ENST00000392492|AANAT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.2992553710938	2	577.298039	1152.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.864	1	67.848	67.348	68.348	-0.016296								0	0	0	0.20639	1	17052	17052		20.454	2.3073	1				8686	3435	4732	4732	11542	11542					0.011337082691625255
FEIETEPQAA	10	Unmodified	_FEIETEPQAA_					0	0	0		nc|ENSG00000178662|Q8WYN3-2|CSRNP3;ENSG00000178662|ENST00000651982|CSRNP3	nc|ENSG00000178662|Q8WYN3-2|CSRNP3	nc|ENSG00000178662|Q8WYN3-2|CSRNP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2793579101562	2	567.769311	1133.52407	0.25748	0.00014619	0.075608	4.2928E-05	0.33309	0.00018912	567.7695855631378	63.133	0.6302	63.125	62.778	63.408	-0.0085526					35	22	2	0	0	0	0.31629	1	15534	15534		10.074	0	1	415930			8687	7067	4733	4733	11543	11543					-0.03735178727083621
FEIQGHEKF	9	Unmodified	_FEIQGHEKF_					0	0	0			REV__nc|ENSG00000136100|Q86VN1-2|VPS36	REV__nc|ENSG00000136100|Q86VN1-2|VPS36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.781005859375	2	567.782556	1133.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.276	1	74.329	73.829	74.829	0.052361								0	0	0	0.22377	1	19018	19018		14.838	2.3067	1		+		8688	15789	4734	4734	11544	11544					-0.01087445045095592
FEISAPLIL	9	Unmodified	_FEISAPLIL_					0	0	0			REV__nc|ENSG00000130396|P55196-2|AFDN	REV__nc|ENSG00000130396|P55196-2|AFDN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7969055175781	2	501.797143	1001.57973	0.34148	0.00017135	1.2448	0.00062461	1.5862	0.00079597	501.79684509578095	91.954	1.4659	92.044	91.179	92.645	0.090668					102	73	2	0	0	0	0.1669	1	24380	24380		28.487	0	1	329830	+		8689	15455	4735	4735	11545	11545					0.07900699251183596
FEISAPLIL	9	Unmodified	_FEISAPLIL_					0	0	0			REV__nc|ENSG00000130396|P55196-2|AFDN	REV__nc|ENSG00000130396|P55196-2|AFDN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.63433837890625	2	501.797143	1001.57973	0.34148	0.00017135	1.2448	0.00062461	1.5862	0.00079597	501.79684509578095	91.954	1.4659	92.044	91.179	92.645	0.090668					102	73	2	0	0	0	0.2451	1	24464	24464		10.824	0	1	329830	+		8690	15455	4735	4735	11546	11546					0.07900699251183596
FEKAIALREK	10	Unmodified	_FEKAIALREK_					0	0	0			REV__nc|ENSG00000160360|Q86YR5-3|GPSM1	REV__nc|ENSG00000160360|Q86YR5-3|GPSM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.289306640625	2	602.856055	1203.69756	0.3913	0.0002359	-0.21795	-0.0001314	0.17334	0.0001045	602.8561364664018	46.067	0.38932	46.132	45.976	46.366	0.065048					25	13	3	0	0	0	0.31889	1	10397	10397		6.2058	1.8765	1	278960	+		8691	16899	4736	4736	11547	11547					0.10385651839828824
FEKAIALREK	10	Unmodified	_FEKAIALREK_					0	0	0			REV__nc|ENSG00000160360|Q86YR5-3|GPSM1	REV__nc|ENSG00000160360|Q86YR5-3|GPSM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	602.856055	1203.69756	0.24339	0.00014673	-0.26396	-0.00015913	-0.020568	-1.24E-05	602.855909364321	46.276	0.34607	46.276	46.029	46.375	0	0.094719	-0.00015401	NaN	6.2058	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	491650	+		8692	16899	4736	4736							0.10385651839828824
FEKAIALREK	10	Unmodified	_FEKAIALREK_					0	0	0			REV__nc|ENSG00000160360|Q86YR5-3|GPSM1	REV__nc|ENSG00000160360|Q86YR5-3|GPSM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	602.856055	1203.69756	0.22947	0.00013834	0.10512	6.3373E-05	0.33459	0.00020171	603.3576234359199	46.076	0.30843	46.136	45.951	46.259	0.059834	-0.045653	0.000291	NaN	6.2058	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304030	+		8693	16899	4736	4736							0.10385651839828824
FEKELEVLQ	9	Unmodified	_FEKELEVLQ_					0	0	0			REV__nc|ENSG00000120093|P14651-3|HOXB3	REV__nc|ENSG00000120093|P14651-3|HOXB3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8192749023438	2	567.805697	1133.59684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.909	1	44.909	44.409	45.409	0								0	0	0	0.21971	1	9994	9994		16.149	0.38088	1		+		8694	14501	4737	4737	11548	11548					0.035385750663408544
FEKELEVLQ	9	Unmodified	_FEKELEVLQ_					0	0	0			REV__nc|ENSG00000120093|P14651-3|HOXB3	REV__nc|ENSG00000120093|P14651-3|HOXB3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8189086914062	2	567.805697	1133.59684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.961	1	44.961	44.461	45.461	0								0	0	0	0.21971	1	10010	10010		16.149	0.38088	1		+		8695	14501	4737	4737	11549	11549					0.035385750663408544
FEKLNEGRRI	10	Unmodified	_FEKLNEGRRI_					0	0	0			REV__nc|ENSG00000186409|Q5VVM6-2|CCDC30	REV__nc|ENSG00000186409|Q5VVM6-2|CCDC30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5740051269531	3	421.238566	1260.69387	-0.10767	-4.5354E-05	0.665	0.00028013	0.55734	0.00023477	421.23851300242717	33.528	0.96447	33.595	33.245	34.209	0.066704					98	34	4	0	0	0	0.36368	1	6605	6605		6.2344	0	1	2470400	+		8696	18445	4738	4738	11550	11550					0.07394982065989097
FEKLRTAR	8	Unmodified	_FEKLRTAR_					0	0	0		ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2288513183594	2	510.801083	1019.58761	0.44017	0.00022484	0.01025	5.2356E-06	0.45042	0.00023008	510.8009127186102	35.827	0.29519	35.827	35.693	35.988	0					13	10	2	0	0	0	0.34198	1	7206	7206		10.824	1.4765	1	109050			8697	2344	4739	4739	11551	11551					0.07860271291337995
FEKLRTAR	8	Unmodified	_FEKLRTAR_					0	0	0		ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2289123535156	2	510.801083	1019.58761	0.24455	0.00012492	0.87523	0.00044707	1.1198	0.00057198	510.8015675570901	35.735	0.2533	35.822	35.645	35.898	0.08625					11	8	2	0	0	0	0.34198	1	7162	7162		10.824	0	1	85685			8698	2344	4739	4739	11552	11552					0.07860271291337995
FEKLTLYCD	9	Unmodified	_FEKLTLYCD_					0	0	0		nc|ENSG00000167995|O76090-3|BEST1;ENST00000534553.5_1_11:61717864-61722837:+|nuORF;ENST00000524877.5_1_11:61717864-61722837:+|nuORF;ENST00000533521.5_1_11:61719272-61722837:+|nuORF;ENST00000529265.5_1_11:61717864-61725974:+|nuORF;nc|ENSG00000167995|O76090-4|BEST1;ENSG00000167995|ENST00000378043|BEST1	nc|ENSG00000167995|O76090-3|BEST1	nc|ENSG00000167995|O76090-3|BEST1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7979125976562	2	566.273175	1130.5318	0.40902	0.00023162	-0.34325	-0.00019437	0.065773	3.7246E-05	566.2729111297377	65.534	1.441	65.534	65.218	66.659	0					68	51	2	0	0	0	0.24688	1	16675	16675		14.838	10.894	1	356680			8699	12825	4740	4740	11553	11553					-0.028247427311725914
FEKQTRLMKIG	11	Unmodified	_FEKQTRLMKIG_					0	0	0		ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.9135437011719	3	450.92359	1349.74894	0.20816	9.3864E-05	-0.70104	-0.00031611	-0.49288	-0.00022225	450.9233223394209	28.863	1.1026	28.863	28.389	29.492	0					80	39	4	0	0	0	0.46842	1	5218	5218		2.2527	0	1	287150			8700	3287	4741	4741	11554	11554					0.08805652542218922
FEKTFAKF	8	Unmodified	_FEKTFAKF_					0	0	0			REV__ENSG00000165661|ENST00000358701|QSOX2	REV__ENSG00000165661|ENST00000358701|QSOX2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2571716308594	2	509.273835	1016.53312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.051	1	43.136	42.636	43.636	0.085197								0	0	0	0.33432	1	9421	9421		21.747	3.6117	1		+		8701	17251	4742	4742	11555	11555					0.025512594198971783
FEKTRQAFTL	10	Unmodified	_FEKTRQAFTL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.2742919921875	2	620.837862	1239.66117	0.15925	9.8866E-05	-2.3556	-0.0014624	-2.1963	-0.0013636	620.8361425112706	62.915	0.34668	63.01	62.854	63.2	0.095722					17	12	2	0	0	0	0.31143	1	15559	15559		17.113	4.8722	1	91137			8702	6167	4743	4743	11556	11556					0.05092774943113909
FELCTSIVL	9	Unmodified	_FELCTSIVL_					0	0	0			REV__nc|ENSG00000211817|A0JD32|TRAV38-2DV8	REV__nc|ENSG00000211817|A0JD32|TRAV38-2DV8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7816772460938	2	512.772811	1023.53107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.512	1	85.593	85.093	86.093	0.080887								0	0	0	0.21726	1	22458	22458		16.942	1.0951	1		+		8703	23185	4744	4744	11557	11557					0.020244626197836624
FELDGRPF	8	Unmodified	_FELDGRPF_					0	0	0		ENST00000530561.5_1_11:58294929-58321330:-|nuORF;ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN	ENST00000530561.5_1_11:58294929-58321330:-|nuORF	ENST00000530561.5_1_11:58294929-58321330:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.30108642578125	2	490.745442	979.476331	0.37053	0.00018183	-0.20083	-9.8559E-05	0.16969	8.3275E-05	490.74516421330435	55.573	0.50401	55.554	55.349	55.853	-0.019081					27	18	2	0	0	0	0.34117	1	13269	13269		13.906	13.906	1	328960			8704	2289	4745	4745	11558	11558					-0.014227881366082329
FELDGRPF	8	Unmodified	_FELDGRPF_					0	0	0		ENST00000530561.5_1_11:58294929-58321330:-|nuORF;ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN	ENST00000530561.5_1_11:58294929-58321330:-|nuORF	ENST00000530561.5_1_11:58294929-58321330:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	490.745442	979.476331	0.22385	0.00010985	-0.23472	-0.00011519	-0.01087	-5.3344E-06	490.7450796285655	55.45	0.42996	55.45	55.198	55.628	0	-0.018996	0.00016909	NaN	9.3831	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251820			8705	2289	4745	4745							-0.014227881366082329
FELDGRPF	8	Unmodified	_FELDGRPF_					0	0	0		ENST00000530561.5_1_11:58294929-58321330:-|nuORF;ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN	ENST00000530561.5_1_11:58294929-58321330:-|nuORF	ENST00000530561.5_1_11:58294929-58321330:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	490.745442	979.476331	0.55319	0.00027147	-1.3967	-0.00068545	-0.84355	-0.00041397	490.74428573270677	55.333	0.63795	55.403	55.216	55.854	0.070885	-0.065795	-0.00097142	NaN	9.3831	33	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282330			8706	2289	4745	4745							-0.014227881366082329
FELEHQYYRRW	11	Unmodified	_FELEHQYYRRW_					0	0	0		ENST00000561148.5_1_15:45689254-45694267:-|nuORF	ENST00000561148.5_1_15:45689254-45694267:-|nuORF	ENST00000561148.5_1_15:45689254-45694267:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.88446044921875	4	407.450754	1625.77391	0.26415	0.00010763	-1.254	-0.00051094	-0.98985	-0.00040332	407.70119200546895	20.678	0.24746	20.625	20.448	20.695	-0.05291					12	8	3	0	0	0	0.33296	1	2607	2607		2.6312	2.5364	1	31562			8707	11909	4746	4746	11559	11559					-0.013945763308356618
FELKLYMIR	9	Unmodified	_FELKLYMIR_					0	0	0		ENST00000475074.1_1_2:131103527-131104038:+|nuORF;ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF	ENST00000475074.1_1_2:131103527-131104038:+|nuORF	ENST00000475074.1_1_2:131103527-131104038:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.23797607421875	3	404.898493	1211.67365	-0.14765	-5.9784E-05	1.1474	0.00046458	0.99975	0.0004048	404.9001975681422	22.081	0.12904	21.981	21.888	22.017	-0.10034					6	4	2	0	0	0	0.26188	1	3022	3022		0.86438	0.16671	1	17646			8708	3992	4747	4747	11560	11560					0.07628095081804531
FELKRRPNF	9	Unmodified	_FELKRRPNF_					0	0	0			REV__ENST00000460674.5_1_3:148894093-148897462:-|nuORF	REV__ENST00000460674.5_1_3:148894093-148897462:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.7843017578125	2	603.840739	1205.66693	0.57465	0.000347	-0.51966	-0.00031379	0.054988	3.3204E-05	603.8403455851471	53.235	0.23776	53.235	53.121	53.358	0					10	8	2	0	0	0	0.25323	1	12562	12562		10.074	0.6908	1	142910	+		8709	13543	4748	4748	11561	11561					0.07231918245452107
FELRENSGLGK	11	Unmodified	_FELRENSGLGK_					0	0	0			REV__ENSG00000125780|ENST00000381458|TGM3	REV__ENSG00000125780|ENST00000381458|TGM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.3322143554688	2	625.330402	1248.64625	0.25664	0.00016049	2.3298	0.0014569	2.5865	0.0016174	625.3320500526123	68.456	0.56924	68.436	68.197	68.766	-0.01915					43	19	3	0	0	0	0.16642	1	17242	17242		34.222	2.9534	1	569440	+		8710	15283	4749	4749	11562	11562					0.03187283075135383
FELTQESKK	9	Unmodified	_FELTQESKK_					0	0	0		ENST00000583556.1_1_18:18550290-18550455:-|nuORF;ENSG00000067900|ENST00000399799|ROCK1	ENST00000583556.1_1_18:18550290-18550455:-|nuORF	ENST00000583556.1_1_18:18550290-18550455:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2942504882812	2	555.295496	1108.57644	-0.0088088	-4.8915E-06	-3.1603	-0.0017549	-3.1691	-0.0017598	555.2937439801894	13.717	0.45514	13.717	13.537	13.992	0					43	15	4	0	0	0	0.26068	1	509	509		3.2813	0	1	127420			8711	872	4750	4750	11563	11563					0.026494044065202615
FEMWDWESL	9	Unmodified	_FEMWDWESL_					0	0	0			REV__ENSG00000134070|ENST00000256458|IRAK2	REV__ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.760009765625	2	621.760432	1241.50631	0.37578	0.00023365	-0.81353	-0.00050582	-0.43775	-0.00027217	621.7597471722662	57.512	0.63793	57.512	57.19	57.828	0					46	22	3	0	0	0	0.17787	1	13891	13891		26.884	6.4691	1	639570	+		8712	15653	4751	4751	11564	11564					-0.10478217253580624
FENGIYTPRL	10	Unmodified	_FENGIYTPRL_					0	0	0		ENSG00000166278|ENST00000299367|C2	ENSG00000166278|ENST00000299367|C2	ENSG00000166278|ENST00000299367|C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.7683715820312	2	605.316763	1208.61897	0.57715	0.00034936	1.1134	0.00067399	1.6906	0.0010233	605.317532262132	57.554	0.47675	57.554	57.216	57.693	0					25	16	2	0	0	0	0.31629	1	13848	13848		6.2058	0	1	353670			8713	6056	4752	4752	11565	11565					0.023007995347597898
FENNVLSEL	9	Unmodified	_FENNVLSEL_					0	0	0			REV__ENSG00000163785|ENST00000623711|RYK	REV__ENSG00000163785|ENST00000623711|RYK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7669067382812	2	532.766571	1063.51859	0.35182	0.00018744	1.0475	0.00055806	1.3993	0.0007455	532.7668273137141	71.261	0.75133	71.322	71.148	71.9	0.060783					34	26	2	0	0	0	0.17787	1	18168	18168		26.884	0.61551	1	491870	+		8714	17088	4753	4753	11566	11566					-0.010628575189002731
FENRTFDSIM	10	Unmodified	_FENRTFDSIM_					0	0	0		nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.8603515625	2	630.289888	1258.56522	0.55938	0.00035257	0.46239	0.00029144	1.0218	0.00064401	630.2901212680974	84.542	0.60661	84.529	84.283	84.889	-0.01284					64	23	4	0	0	0	0.26638	1	22103	22103		24.021	10.115	1	508620			8715	5646	4754	4754	11567	11567					-0.05371740959276394
FEPCDILQSF	10	Unmodified	_FEPCDILQSF_					0	0	0			REV__nc|ENSG00000138709|Q659C4-9|LARP1B	REV__nc|ENSG00000138709|Q659C4-9|LARP1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.7741088867188	2	599.776082	1197.53761	0.47486	0.00028481	-4.0819	-0.0024482	-3.607	-0.0021634	599.7730546637147	71.199	0.54296	71.175	70.856	71.399	-0.024872					26	19	2	0	0	0	0.23397	1	18061	18061		28.495	7.9136	1	512420	+		8716	15949	4755	4755	11568	11568					-0.0532564421951065
FEPCDILQSF	10	Unmodified	_FEPCDILQSF_					0	0	0			REV__nc|ENSG00000138709|Q659C4-9|LARP1B	REV__nc|ENSG00000138709|Q659C4-9|LARP1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	599.776082	1197.53761	0.49919	0.0002994	-4.2164	-0.0025289	-3.7172	-0.0022295	599.773215482768	71.004	0.4702	71.004	70.739	71.209	0	-0.08734	0.00013509	NaN	28.495	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467740	+		8717	15949	4755	4755							-0.0532564421951065
FEPCDILQSF	10	Unmodified	_FEPCDILQSF_					0	0	0			REV__nc|ENSG00000138709|Q659C4-9|LARP1B	REV__nc|ENSG00000138709|Q659C4-9|LARP1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	599.776082	1197.53761	0.49843	0.00029895	-4.5395	-0.0027227	-4.041	-0.0024237	599.7731407981382	71.035	0.39343	71.095	70.88	71.273	0.060783	0.0040443	-0.0002525	NaN	28.495	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387890	+		8718	15949	4755	4755							-0.0532564421951065
FEPCDILQSF	10	Unmodified	_FEPCDILQSF_					0	0	0			REV__nc|ENSG00000138709|Q659C4-9|LARP1B	REV__nc|ENSG00000138709|Q659C4-9|LARP1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	599.776082	1197.53761	0.47486	0.00028481	-4.0819	-0.0024482	-3.607	-0.0021634	599.7730546637147	71.199	0.54296	71.175	70.856	71.399	-0.024872	0.083296	0.00029639	NaN	28.495	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	512420	+		8719	15949	4755	4755							-0.0532564421951065
FEPHPEGQQAA	11	Unmodified	_FEPHPEGQQAA_					0	0	0			REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1	REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.1881103515625	3	404.18776	1209.54145	-0.027544	-1.1133E-05	1.4166	0.00057259	1.3891	0.00056145	404.18816482717955	23.888	0.57285	23.849	23.562	24.135	-0.038927					54	19	4	0	0	0	0.45108	1	3601	3601		2.084	0	1	174460	+		8720	19267	4756	4756	11569	11569					-0.054938384014121766
FEPVKKLFTV	10	Unmodified	_FEPVKKLFTV_					0	0	0			REV__ENSG00000178802|ENST00000352410|MPI	REV__ENSG00000178802|ENST00000352410|MPI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.8612060546875	2	604.357899	1206.70125	0.48325	0.00029205	1.1221	0.00067818	1.6054	0.00097023	604.358307807921	91.329	0.26553	91.329	91.205	91.471	0					34	20	2	0	0	0	0.41512	1	24237	24237		0.40072	0	1	219670	+		8721	18046	4757	4757	11570	11570					0.10616321613701984
FEQEPLAK	8	Unmodified	_FEQEPLAK_					0	0	0		nc|ENSG00000113763|Q6ZN44-3|UNC5A;nc|ENSG00000113763|Q6ZN44-2|UNC5A;ENSG00000113763|ENST00000329542|UNC5A	nc|ENSG00000113763|Q6ZN44-3|UNC5A;nc|ENSG00000113763|Q6ZN44-2|UNC5A	nc|ENSG00000113763|Q6ZN44-2|UNC5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7763366699219	2	481.2531	960.491647	0.021604	1.0397E-05	1.176	0.00056597	1.1976	0.00057637	481.25361693770026	15.099	0.46582	14.989	14.765	15.23	-0.10981					23	16	2	0	0	0	0.34294	1	990	990		7.2892	0	1	48359			8722	2530;12659	4758	4758	11571	11571					0.00982078660570096
FEQEPLAK	8	Unmodified	_FEQEPLAK_					0	0	0		nc|ENSG00000113763|Q6ZN44-3|UNC5A;nc|ENSG00000113763|Q6ZN44-2|UNC5A;ENSG00000113763|ENST00000329542|UNC5A	nc|ENSG00000113763|Q6ZN44-3|UNC5A;nc|ENSG00000113763|Q6ZN44-2|UNC5A	nc|ENSG00000113763|Q6ZN44-2|UNC5A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	481.2531	960.491647	-0.10064	-4.8435E-05	1.6959	0.00081615	1.5952	0.00076772	481.2539324578376	14.997	0.33544	14.997	14.819	15.154	0	0.0038306	0.00034041	NaN	7.2892	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59112			8723	2530;12659	4758	4758							0.00982078660570096
FEQHRYHI	8	Unmodified	_FEQHRYHI_					0	0	0			REV__ENSG00000007202|ENST00000528896|BLTP2	REV__ENSG00000007202|ENST00000528896|BLTP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7979125976562	2	565.280515	1128.54648	0.45907	0.0002595	-0.51508	-0.00029116	-0.056007	-3.1659E-05	565.2804600478353	66.2	0.56579	66.2	66.035	66.6	0					28	19	2	0	0	0	0.3366	1	16675	16675		18.135	4.2289	1	267320	+		8724	13382	4759	4759	11572	11572					-0.01265489748152504
FEQHRYHI	8	Unmodified	_FEQHRYHI_					0	0	0			REV__ENSG00000007202|ENST00000528896|BLTP2	REV__ENSG00000007202|ENST00000528896|BLTP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7978515625	2	565.280515	1128.54648	0.30154	0.00017046	-0.6607	-0.00037348	-0.35916	-0.00020303	565.2799248183879	66.219	0.59176	66.205	65.919	66.511	-0.013588					34	17	3	0	0	0	0.3366	1	16619	16619		18.135	0	1	256620	+		8725	13382	4759	4759	11573	11573					-0.01265489748152504
FEQLFDLDPK	10	Unmodified	_FEQLFDLDPK_					0	0	0			REV__nc|ENSG00000146054|Q9C029-3|TRIM7	REV__nc|ENSG00000146054|Q9C029-3|TRIM7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.55810546875	3	417.880044	1250.6183	-0.23353	-9.7589E-05	0.074059	3.0948E-05	-0.15947	-6.6641E-05	417.87999934406	15.844	1.1696	15.844	15.207	16.377	0					59	40	3	0	0	0	0.32034	1	958	958		1.2148	0	1	115110	+		8726	16323	4760	4760	11574	11574					0.003019600950210588
FERFQHDWSRL	11	Unmodified	_FERFQHDWSRL_					0	0	0			REV__ENST00000367478.8_1_1:186291705-186292852:-|nuORF	REV__ENST00000367478.8_1_1:186291705-186292852:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.8006591796875	3	507.584625	1519.73205	0.11399	5.7858E-05	0.61291	0.0003111	0.7269	0.00036896	507.58508274436844	24.545	0.66049	24.51	24.226	24.886	-0.035357					59	22	4	0	0	0	0.33334	1	3835	3835		1.2148	0.76031	1	345120	+		8727	20313	4761	4761	11575	11575					-0.007031320193391366
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	nc|ENSG00000122786|Q05682-4|CALD1	nc|ENSG00000122786|Q05682-4|CALD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3097534179688	3	525.309718	1572.90732	0.32032	0.00016826	-0.0041098	-2.1589E-06	0.31621	0.00016611	525.3096001955155	95.146	1.0073	95.146	94.352	95.359	0					275	91	4	0	0	0	0.48486	1	25402	25402		0.094841	0.011491	1	746430			8728	3071	4762	4762	11576	11576					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	nc|ENSG00000122786|Q05682-4|CALD1	nc|ENSG00000122786|Q05682-4|CALD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.310791015625	3	525.309718	1572.90732	0.11679	6.1349E-05	0.86196	0.0004528	0.97875	0.00051415	525.3103350086091	98.997	0.3829	98.997	98.85	99.233	0					84	45	2	0	0	0	0.48486	1	26488	26488		0.094841	0.011491	1	175730			8729	3071	4762	4762	11577	11577					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	nc|ENSG00000122786|Q05682-4|CALD1	nc|ENSG00000122786|Q05682-4|CALD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.310302734375	3	525.309718	1572.90732	0.35525	0.00018662	0.059549	3.1282E-05	0.4148	0.0002179	525.3096652742355	95.861	2.1594	95.938	94.551	96.71	0.077408					569	196	4	0	0	0	0.48486	3	25438	25438;25708;25781		0.094841	0.011491	1	1130000			8730	3071	4762	4762	11578;11579;11580	11578					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	nc|ENSG00000122786|Q05682-4|CALD1	nc|ENSG00000122786|Q05682-4|CALD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3101196289062	3	525.309718	1572.90732	0.55958	0.00029395	-0.082352	-4.326E-05	0.47723	0.00025069	525.3096041725858	95.918	1.503	95.914	95.267	96.77	-0.0038147					424	147	4	0	0	0	0.48247	4	25479	25479;25710;25818;25860		0.40827	0.32491	1	996780			8731	3071	4762	4762	11581;11582;11583;11584	11581					0.1437870756551547
FERRRELRRQK	11	Unmodified	_FERRRELRRQK_					0	0	0		nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;ENST00000475772.5_1_7:134552484-134552556:+|nuORF	nc|ENSG00000122786|Q05682-4|CALD1	nc|ENSG00000122786|Q05682-4|CALD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	525.309718	1572.90732	0.46372	0.0002436	-0.22595	-0.00011869	0.23777	0.00012491	525.3093045741653	99.041	0.35748	99.034	98.85	99.207	-0.006897	0.018286	-0.001342	NaN	0.094841	69	46	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148510			8732	3071	4762	4762							0.1437870756551547
FERVEEDTDK	10	Unmodified	_FERVEEDTDK_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.7058410644531	3	423.198213	1266.57281	-1.0509	-0.00044475	2.2814	0.00096549	1.2305	0.00052074	423.19912945964376	34.514	0.27384	34.589	34.383	34.657	0.075306					12	9	2	0	0	0	0.3183	1	6789	6789		8.4443	0.96724	1	54120	+		8733	18631	4763	4763	11585	11585					-0.04981310157995722
FESATIVETLD	11	Unmodified	_FESATIVETLD_					0	0	0			REV__nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C	REV__nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.8023681640625	2	612.803351	1223.59215	0.12107	7.419E-05	-1.5122	-0.00092668	-1.3911	-0.00085249	612.8021729486616	76.3	0.49808	76.3	75.976	76.474	0					28	17	2	0	0	0	0.39234	1	19640	19640		12.241	2.8575	1	200990	+		8734	13785	4764	4764	11586	11586					-0.010703538670895796
FESFSDELW	9	Unmodified	_FESFSDELW_					0	0	0		ENSG00000184574|ENST00000329858|LPAR5	ENSG00000184574|ENST00000329858|LPAR5	ENSG00000184574|ENST00000329858|LPAR5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.825927734375	2	580.250754	1158.48696	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.08	1	74.08	73.58	74.58	0								0	0	0	0.25631	1	18965	18965		4.3292	0.38484	1				8735	7462	4765	4765	11587	11587					-0.08594850272857002
FESFWCRY	8	Unmodified	_FESFWCRY_					0	0	0			REV__ENST00000356384.4_1_9:137328607-137328931:+|nuORF	REV__ENST00000356384.4_1_9:137328607-137328931:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.2443237304688	2	569.244752	1136.47495	-0.076283	-4.3424E-05	-0.72141	-0.00041066	-0.79769	-0.00045408	569.2444996947008	13.783	0.4248	13.783	13.63	14.055	0					44	14	5	0	0	0	0.46491	1	582	582		0.69038	0.088878	1	386640	+		8736	20199	4766	4766	11588	11588					-0.08782745497023825
FESKYVDYD	9	Unmodified	_FESKYVDYD_					0	0	0			REV__nc|ENSG00000084234|Q06481-4|APLP2	REV__nc|ENSG00000084234|Q06481-4|APLP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.274658203125	2	583.256037	1164.49752	0.13722	8.0036E-05	0.031602	1.8432E-05	0.16882	9.8468E-05	583.2560625184135	61.224	0.57079	61.224	61.052	61.623	0					35	21	2	0	0	0	0.2451	1	14973	14973		15.847	1.0089	1	478180	+		8737	13945	4767	4767	11589	11589					-0.07814867618412791
FESRAPKIT	9	Unmodified	_FESRAPKIT_					0	0	0			REV__nc|ENSG00000115919|Q16719-2|KYNU	REV__nc|ENSG00000115919|Q16719-2|KYNU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.26611328125	2	524.792924	1047.57129	0.50281	0.00026387	-0.057636	-3.0247E-05	0.44517	0.00023362	524.7929570036324	53.369	0.4938	53.425	53.221	53.714	0.056255					24	18	2	0	0	0	0.22596	1	12657	12657		15.847	4.2069	1	243990	+		8738	22962	4768	4768	11590	11590					0.049411453345555856
FESRAPKIT	9	Unmodified	_FESRAPKIT_					0	0	0			REV__nc|ENSG00000115919|Q16719-2|KYNU	REV__nc|ENSG00000115919|Q16719-2|KYNU	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.792924	1047.57129	0.59287	0.00031113	0.13017	6.8311E-05	0.72303	0.00037944	524.7923535861619	53.513	0.41817	53.504	53.353	53.771	-0.0096092	0.067926	0.00027816	NaN	15.847	24	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232700	+		8739	22962	4768	4768							0.049411453345555856
FETLKRNI	8	Unmodified	_FETLKRNI_					0	0	0		ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	ENSG00000070444|ENST00000174618|MNT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2749938964844	2	510.795466	1019.57638	0.1208	6.1704E-05	1.4501	0.0007407	1.5709	0.0008024	510.796047658194	19.17	0.81599	19.17	18.923	19.739	0					52	28	2	0	0	0	0.34247	1	2189	2189		8.5933	0	1	75572			8740	927	4769	4769	11591	11591					0.06737449197191836
FEVAVSVPSRF	11	Unmodified	_FEVAVSVPSRF_					0	0	0		ENST00000230859.7_2_5:6755307-6755463:+|nuORF	ENST00000230859.7_2_5:6755307-6755463:+|nuORF	ENST00000230859.7_2_5:6755307-6755463:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.223876953125	3	413.224034	1236.65027	0.018028	7.4497E-06	-0.14983	-6.1915E-05	-0.1318	-5.4465E-05	413.22389872664513	68.924	0.84225	68.924	68.643	69.485	0					69	29	4	0	0	0	0.17507	1	17366	17366		22.109	3.7692	1	669700			8741	8860	4770	4770	11592	11592					0.04141372568847146
FEVAVSVPSRF	11	Unmodified	_FEVAVSVPSRF_					0	0	0		ENST00000230859.7_2_5:6755307-6755463:+|nuORF	ENST00000230859.7_2_5:6755307-6755463:+|nuORF	ENST00000230859.7_2_5:6755307-6755463:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.33251953125	2	619.332413	1236.65027	0.30709	0.00019019	-0.37201	-0.0002304	-0.06492	-4.0207E-05	619.3320459838643	68.915	0.75556	68.915	68.643	69.398	0					79	26	4	0	0	0	0.21521	1	17412	17412		29.841	4.8496	1	1342400			8742	8860	4770	4770	11593	11593					0.04141372568847146
FEVAVSVPSRF	11	Unmodified	_FEVAVSVPSRF_					0	0	0		ENST00000230859.7_2_5:6755307-6755463:+|nuORF	ENST00000230859.7_2_5:6755307-6755463:+|nuORF	ENST00000230859.7_2_5:6755307-6755463:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.3320922851562	2	619.332413	1236.65027	0.21246	0.00013158	-0.17366	-0.00010755	0.038796	2.4027E-05	619.3322135375281	68.837	0.9361	68.909	68.649	69.585	0.071945					88	33	4	0	0	0	0.14098	3	17332	17332;17387;17437		36.506	6.6656	1	1844400			8743	8860	4770	4770	11594;11595;11596	11594					0.04141372568847146
FEVAVSVPSRF	11	Unmodified	_FEVAVSVPSRF_					0	0	0		ENST00000230859.7_2_5:6755307-6755463:+|nuORF	ENST00000230859.7_2_5:6755307-6755463:+|nuORF	ENST00000230859.7_2_5:6755307-6755463:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.33251953125	2	619.332413	1236.65027	0.21228	0.00013147	-0.03178	-1.9682E-05	0.1805	0.00011179	619.3322854489854	68.937	0.97183	68.918	68.652	69.624	-0.01915					93	34	4	0	0	0	0.14098	2	17345	17345;17391		36.506	6.6656	1	2721400			8744	8860	4770	4770	11597;11598	11597					0.04141372568847146
FEVAVSVPSRF	11	Unmodified	_FEVAVSVPSRF_					0	0	0		ENST00000230859.7_2_5:6755307-6755463:+|nuORF	ENST00000230859.7_2_5:6755307-6755463:+|nuORF	ENST00000230859.7_2_5:6755307-6755463:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.55828857421875	3	413.224034	1236.65027	0.21587	8.9203E-05	-0.29816	-0.00012321	-0.082291	-3.4005E-05	413.2238929973504	68.927	0.83963	68.908	68.652	69.492	-0.019157					88	29	4	0	0	0	0.099415	1	17359	17359		27.129	4.1132	1	1944600			8745	8860	4770	4770	11599	11599					0.04141372568847146
FEVAVSVPSRF	11	Unmodified	_FEVAVSVPSRF_					0	0	0		ENST00000230859.7_2_5:6755307-6755463:+|nuORF	ENST00000230859.7_2_5:6755307-6755463:+|nuORF	ENST00000230859.7_2_5:6755307-6755463:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	413.224034	1236.65027	0.35351	0.00014608	-0.48792	-0.00020162	-0.13441	-5.5542E-05	413.2237907375568	68.851	0.90501	68.923	68.649	69.554	0.071938	0.0047446	-0.00016534	NaN	27.129	96	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1374900			8746	8860	4770	4770							0.04141372568847146
FEVLRQYFF	9	Unmodified	_FEVLRQYFF_					0	0	0			REV__ENSG00000172113|ENST00000442597|NME6	REV__ENSG00000172113|ENST00000442597|NME6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.2193908691406	3	416.885241	1247.63389	-0.058393	-2.4343E-05	-0.14341	-5.9784E-05	-0.2018	-8.4128E-05	416.8851753742868	61.334	0.87398	61.324	61.104	61.978	-0.0094566					68	31	3	0	0	0	0.32885	1	15102	15102		4.5289	0.12271	1	1151300	+		8747	17692	4771	4771	11600	11600					0.01998291402742325
FEVTTGFLWF	10	Unmodified	_FEVTTGFLWF_					0	0	0			REV__HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|92|1|anti-sense	REV__HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|92|1|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.5325622558594	3	416.209613	1245.60701	-0.23942	-9.965E-05	-0.092309	-3.842E-05	-0.33173	-0.00013807	416.2097276030768	41.176	0.42685	41.176	40.986	41.413	0					20	15	2	0	0	0	0.39745	1	8890	8890		3.8763	0	1	125430	+		8748	22742	4772	4772	11601	11601					-0.005968172084521939
FEVTTGFLWF	10	Unmodified	_FEVTTGFLWF_					0	0	0			REV__HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|92|1|anti-sense	REV__HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|92|1|anti-sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	416.209613	1245.60701	-0.23942	-9.965E-05	-0.092309	-3.842E-05	-0.33173	-0.00013807	416.2097276030768	41.176	0.42685	41.176	40.986	41.413	0	0	0	NaN	3.8763	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125430	+		8749	22742	4772	4772							-0.005968172084521939
FEVYYKLLN	9	Unmodified	_FEVYYKLLN_					0	0	0		nc|ENSG00000213047|Q6P3S1-3|DENND1B;nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B;ENSG00000213047|ENST00000620048|DENND1B	nc|ENSG00000213047|Q6P3S1-3|DENND1B	nc|ENSG00000213047|Q6P3S1-3|DENND1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.2860107421875	2	594.818607	1187.62266	0.5916	0.00035189	-0.62173	-0.00036982	-0.030135	-1.7925E-05	594.8182395009087	63.462	0.51121	63.558	63.339	63.851	0.095722					21	17	2	0	0	0	0.2451	1	15796	15796		10.824	0	1	199710			8750	12940	4773	4773	11602	11602					0.036354693086195766
FEVYYKLLN	9	Unmodified	_FEVYYKLLN_					0	0	0		nc|ENSG00000213047|Q6P3S1-3|DENND1B;nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B;ENSG00000213047|ENST00000620048|DENND1B	nc|ENSG00000213047|Q6P3S1-3|DENND1B	nc|ENSG00000213047|Q6P3S1-3|DENND1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	594.818607	1187.62266	0.57706	0.00034324	-0.82316	-0.00048963	-0.2461	-0.00014639	594.8179586176535	63.585	0.36032	63.577	63.435	63.795	-0.0085526	0.011507	0.0003081	NaN	10.824	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285230			8751	12940	4773	4773							0.036354693086195766
FEWIDISL	8	Unmodified	_FEWIDISL_					0	0	0			REV__ENSG00000100104|ENST00000215917|SRRD	REV__ENSG00000100104|ENST00000215917|SRRD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.27490234375	2	511.7633	1021.51205	0.10727	5.4899E-05	-0.16869	-8.6331E-05	-0.061418	-3.1432E-05	512.2647440493182	19.032	0.26131	19.032	18.895	19.157	0					11	8	2	0	0	0	0.34337	1	2141	2141		5.2307	0	1	25626	+		8752	14162	4774	4774	11603	11603					0.0021524932037664257
FEWLKLKPF	9	Unmodified	_FEWLKLKPF_					0	0	0			REV__AGL|p.I817Nfs*3|1|0.24|ENSG00000162688|chr1:99884350-99884351|-/A|frameshift_variant	REV__AGL|p.I817Nfs*3|1|0.24|ENSG00000162688|chr1:99884350-99884351|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2349548339844	3	403.233982	1206.68012	-0.34367	-0.00013858	1.1068	0.00044631	0.76317	0.00030774	403.23353639103647	15.525	1.0588	15.525	14.949	16.008	0					53	36	2	0	0	0	0.34243	1	1065	1065		2.4985	0	1	44356	+		8753	13089	4775	4775	11604	11604					0.08504356304842986
FFAAKIVIGMA	11	Unmodified	_FFAAKIVIGMA_					0	0	0		ENSG00000169618|ENST00000303786|PROKR1	ENSG00000169618|ENST00000303786|PROKR1	ENSG00000169618|ENST00000303786|PROKR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.7448120117188	2	584.33337	1166.65219	0.56078	0.00032768	0.35988	0.00021029	0.92066	0.00053797	584.3338853278515	64.244	0.23753	64.234	64.101	64.339	-0.0095291					14	8	2	0	0	0	0.3259	1	15966	15966		13.906	3.0821	1	217100			8754	6370	4776	4776	11605	11605					0.07552710053118972
FFCFCLHYLI	10	Unmodified	_FFCFCLHYLI_					0	0	0			REV__ENST00000509020.2_1_4:37870545-37871372:+|nuORF	REV__ENST00000509020.2_1_4:37870545-37871372:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.57940673828125	3	435.876812	1304.60861	-0.22618	-9.8585E-05	0.84156	0.00036682	0.61538	0.00026823	435.8773015273973	22.256	0.79362	22.206	21.881	22.674	-0.049377					37	27	2	0	0	0	0.32033	1	3112	3112		4.1895	0	1	115700	+		8755	21782	4777	4777	11606	11606					-0.03151222715655422
FFDAVTMLFE	10	Unmodified	_FFDAVTMLFE_					0	0	0			REV__nc|ENSG00000129003|Q709C8-4|VPS13C	REV__nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.1952819824219	3	407.194976	1218.5631	-0.043613	-1.7759E-05	0.91418	0.00037225	0.87056	0.00035449	407.1953384972447	20.342	0.64147	20.342	20.157	20.798	0					34	22	2	0	0	0	0.3994	1	2563	2563		3.5871	0.95582	1	136430	+		8756	15396	4778	4778	11607	11607					-0.03744169697097277
FFDFGRQYF	9	Unmodified	_FFDFGRQYF_					0	0	0			REV__nc|ENSG00000183506|A4QPH2-2|PI4KAP2	REV__nc|ENSG00000183506|A4QPH2-2|PI4KAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.87799072265625	3	409.525825	1225.55564	0.13768	5.6385E-05	1.5259	0.00062491	1.6636	0.0006813	409.5263907148375	35.584	0.49333	35.666	35.461	35.954	0.082359					20	17	2	0	0	0	0.25843	1	7091	7091		5.7319	2.9967	1	120670	+		8757	20266	4779	4779	11608	11608					-0.04811141182472056
FFEFNHHLE	9	Unmodified	_FFEFNHHLE_					0	0	0		nc|ENSG00000170289|Q9NQW8-2|CNGB3;ENSG00000170289|ENST00000320005|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.2794189453125	2	610.28018	1218.54581	0.35183	0.00021472	-1.2494	-0.00076246	-0.89752	-0.00054774	610.2791643032052	67.724	0.51785	67.724	67.479	67.997	0					39	17	3	0	0	0	0.24636	1	17020	17020		16.149	0.90062	1	383110			8758	6439	4780	4780	11609	11609					-0.05472329187841751
FFEFNHHLE	9	Unmodified	_FFEFNHHLE_					0	0	0		nc|ENSG00000170289|Q9NQW8-2|CNGB3;ENSG00000170289|ENST00000320005|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.2797241210938	2	610.28018	1218.54581	0.21689	0.00013236	-1.0702	-0.00065309	-0.85326	-0.00052073	610.2792459220605	67.731	0.59209	67.714	67.478	68.071	-0.016296					39	20	3	0	0	0	0.27726	1	17043	17043		12.241	1.4411	1	368440			8759	6439	4780	4780	11610	11610					-0.05472329187841751
FFELMMKY	8	Unmodified	_FFELMMKY_					0	0	0			REV__ENSG00000119900|ENST00000370435|OGFRL1	REV__ENSG00000119900|ENST00000370435|OGFRL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.7637329101562	2	554.763932	1107.51331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.01	1	104.01	103.51	104.51	0.0082703								0	0	0	0.36169	1	27633	27633		9.3474	2.6243	1		+		8760	15063	4781	4781	11611	11611					-0.03614575906703976
FFELTNWCQQF	11	Unmodified	_FFELTNWCQQF_					0	0	0			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7380676269531	3	488.220184	1461.63872	0.11581	5.6539E-05	0.23555	0.000115	0.35136	0.00017154	488.22022034980324	25.9	0.36239	25.9	25.798	26.161	0					20	12	2	0	0	0	0.33064	1	4160	4160		5.0475	2.4163	1	105530	+		8761	17006	4782	4782	11612	11612					-0.07363192516800154
FFELTNWCQQF	11	Unmodified	_FFELTNWCQQF_					0	0	0			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7381286621094	3	488.220184	1461.63872	0.075612	3.6915E-05	-0.21429	-0.00010462	-0.13867	-6.7703E-05	488.55437879905696	25.959	0.28615	25.921	25.783	26.069	-0.038671					13	9	2	0	0	0	0.33287	1	4198	4198		2.8433	0.93691	1	140040	+		8762	17006	4782	4782	11613	11613					-0.07363192516800154
FFEMTETFTL	10	Unmodified	_FFEMTETFTL_					0	0	0		DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant;ENSG00000197653|ENST00000673944|DNAH10;nc|ENSG00000197653|Q8IVF4|DNAH10	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.7998657226562	2	633.291565	1264.56858	0.51078	0.00032347	-3.4073	-0.0021578	-2.8965	-0.0018343	633.2888300917149	53.555	0.47143	53.555	53.334	53.806	0					24	17	2	0	0	0	0.32009	1	12593	12593		3.9444	0.66309	1	355740			8763	267	4783	4783	11614	11614					-0.053124909052485236
FFEPFFLLI	9	Unmodified	_FFEPFFLLI_					0	0	0			REV__ENST00000258341.4_1_1:183114505-183114610:+|nuORF	REV__ENST00000258341.4_1_1:183114505-183114610:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8240356445312	2	586.823161	1171.63177	0.068832	4.0392E-05	0.5194	0.0003048	0.58823	0.00034519	586.8232390961074	104.06	0.15791	104.07	104.03	104.19	0.0082703					33	21	2	0	0	0	0.30623	1	27669	27669		7.9102	0	1	263980	+		8764	19566	4784	4784	11615	11615					0.05281862664969594
FFEPFFLLI	9	Unmodified	_FFEPFFLLI_					0	0	0			REV__ENST00000258341.4_1_1:183114505-183114610:+|nuORF	REV__ENST00000258341.4_1_1:183114505-183114610:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	586.823161	1171.63177	-0.056696	-3.3271E-05	0.52469	0.0003079	0.46799	0.00027463	586.8232350670949	104.28	0.18437	104.28	104.17	104.36	0	0.10751	2.2115E-06	NaN	7.9102	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173170	+		8765	19566	4784	4784							0.05281862664969594
FFEQEKNFL	9	Unmodified	_FFEQEKNFL_					0	0	0		ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000505757.2_1_4:77266070-77266346:+|nuORF	ENSG00000089006|ENST00000377759|SNX5	ENSG00000089006|ENST00000377759|SNX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.2975463867188	2	601.298039	1200.58152	0.39896	0.0002399	0.35677	0.00021453	0.75574	0.00045442	601.2980781664563	59.182	1.0335	59.182	58.864	59.897	0					92	36	4	0	0	0	0.24467	1	14563	14563		17.113	3.2068	1	2339300			8766	1339	4785	4785	11616	11616					-0.010742917308562028
FFERLNIF	8	Unmodified	_FFERLNIF_					0	0	0			REV__nc|ENSG00000069667|P35398-3|RORA	REV__nc|ENSG00000069667|P35398-3|RORA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2924194335938	2	543.292559	1084.57057	0.67444	0.00036642	-0.87639	-0.00047613	-0.20194	-0.00010971	543.2918516763194	72.066	0.89293	72.039	71.819	72.712	-0.027275					52	31	2	0	0	0	0.33995	1	18356	18356		15.768	1.1865	1	498410	+		8767	22893	4786	4786	11617	11617					0.03166350685501129
FFFELLRMKS	10	Unmodified	_FFFELLRMKS_					0	0	0			REV__ENST00000427910.1_1_X:35077528-35077942:+|nuORF	REV__ENST00000427910.1_1_X:35077528-35077942:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.9056396484375	3	439.905648	1316.69511	0.12537	5.5152E-05	-0.1557	-6.8495E-05	-0.03033	-1.3342E-05	439.905484443019	21.581	0.91529	21.581	21.08	21.996	0					113	32	5	0	0	0	0.35961	1	2903	2903		10.899	10.899	1	753810	+		8768	20913	4787	4787	11618	11618					0.04943480110523524
FFFFFFFFWQ	10	Unmodified	_FFFFFFFFWQ_					0	0	0		ENST00000335154.9_1_12:50038759-50038969:-|nuORF	ENST00000335154.9_1_12:50038759-50038969:-|nuORF	ENST00000335154.9_1_12:50038759-50038969:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.7693176269531	3	503.905865	1508.69577	0.025175	1.2686E-05	-1.897	-0.00095592	-1.8719	-0.00094324	504.23914297973465	28.4	0.58499	28.401	28.13	28.715	0.0004673					41	20	3	0	0	0	0.32165	1	4939	4939		0.69767	0.24315	1	170510			8769	9477	4788	4788	11619	11619					-0.03823357178112019
FFFFFFLIVKG	11	Unmodified	_FFFFFFLIVKG_					0	0	0			REV__ENST00000253039.8_1_X:24094929-24095118:+|nuORF	REV__ENST00000253039.8_1_X:24094929-24095118:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2868347167969	3	471.265282	1410.77402	0.7569	0.0003567	3.5851	0.0016895	4.342	0.0020462	471.2670330252851	50.535	0.22074	50.58	50.491	50.711	0.044891					10	7	2	0	0	0	0.3322	1	11698	11698		4.7159	3.2608	1	121060	+		8770	19534	4789	4789	11620	11620					0.08506075407103708
FFFFFFLIVKG	11	Unmodified	_FFFFFFLIVKG_					0	0	0			REV__ENST00000253039.8_1_X:24094929-24095118:+|nuORF	REV__ENST00000253039.8_1_X:24094929-24095118:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	471.265282	1410.77402	0.535	0.00025213	3.2556	0.0015342	3.7906	0.0017864	471.26696707045073	50.765	0.35709	50.765	50.489	50.846	0	0.092624	-0.00010159	NaN	4.7159	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107420	+		8771	19534	4789	4789							0.08506075407103708
FFFFFNLLK	9	Unmodified	_FFFFFNLLK_					0	0	0			REV__ENST00000555275.5_1_14:58740703-58758361:-|nuORF	REV__ENST00000555275.5_1_14:58740703-58758361:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.8357543945312	2	611.836603	1221.65865	0.24855	0.00015207	-1.795	-0.0010983	-1.5465	-0.00094619	611.8358606493732	24.563	0.42664	24.563	24.279	24.706	0					41	13	4	0	0	0	0.30459	1	3756	3756		1.8442	0.36234	1	266300	+		8772	22249	4790	4790	11621	11621					0.056689712761226474
FFFFFRYQHQ	10	Unmodified	_FFFFFRYQHQ_					0	0	0		ENST00000555275.5_1_14:58740703-58758361:-|nuORF	ENST00000555275.5_1_14:58740703-58758361:-|nuORF	ENST00000555275.5_1_14:58740703-58758361:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2930603027344	3	489.571657	1465.69314	0.23539	0.00011524	-1.1775	-0.00057646	-0.94209	-0.00046122	489.5711261085987	19.337	0.68764	19.281	19.017	19.705	-0.055693					47	23	3	0	0	0	0.32165	1	2303	2303		0.69767	0.19171	1	111310			8773	11846	4791	4791	11622	11622					-0.02107812583062696
FFFFFVVYVK	10	Unmodified	_FFFFFVVYVK_					0	0	0			REV__ENST00000281031.4_2_11:77779613-77779922:-|nuORF	REV__ENST00000281031.4_2_11:77779613-77779922:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7451171875	3	448.245999	1341.71617	-0.15319	-6.8668E-05	-1.6885	-0.00075688	-1.8417	-0.00082554	448.2452624598105	13.054	0.17021	12.954	12.841	13.011	-0.099291					10	5	2	0	0	0	0.32162	1	325	325		0.77653	0.078866	1	31685	+		8774	19707	4792	4792	11623	11623					0.058978134816925376
FFFFLFSFLFF	11	Unmodified	_FFFFLFSFLFF_					0	0	0			REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.59375	3	503.593287	1507.75803	0.34351	0.00017299	-0.35382	-0.00017818	-0.010313	-5.1935E-06	503.593380542246	58.816	1.6515	58.816	58.413	60.065	0					201	57	6	0	0	0	0.2331	3	14303	14249;14303;14354		28.234	10.37	1	15646000	+		8775	20599	4793	4793	11624;11625;11626	11625					0.024463691702294454
FFFFLFSFLFF	11	Unmodified	_FFFFLFSFLFF_					0	0	0			REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.290283203125	3	503.593287	1507.75803	0.34351	0.00017299	-0.35382	-0.00017818	-0.010313	-5.1935E-06	503.593380542246	58.816	1.6515	58.816	58.413	60.065	0					201	57	6	0	0	0	0.32719	1	14242	14242		14.218	6.7411	1	15646000	+		8776	20599	4793	4793	11627	11627					0.024463691702294454
FFFFLFSFLFF	11	Unmodified	_FFFFLFSFLFF_					0	0	0			REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.59381103515625	3	503.593287	1507.75803	0.36517	0.0001839	-0.42662	-0.00021484	-0.061452	-3.0947E-05	503.59332862028157	58.626	1.6768	58.718	58.366	60.043	0.091305					207	59	6	0	0	0	0.2331	3	14233	14182;14233;14274		28.234	4.4326	1	15435000	+		8777	20599	4793	4793	11628;11629;11630	11629					0.024463691702294454
FFFFLFSFLFF	11	Unmodified	_FFFFLFSFLFF_					0	0	0			REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.5938720703125	3	503.593287	1507.75803	0.40491	0.00020391	-0.28595	-0.000144	0.11897	5.9912E-05	503.5935199372825	58.946	1.7672	58.931	58.608	60.375	-0.014267					201	62	5	0	0	0	0.16642	2	14327	14281;14327		34.222	11.447	1	21734000	+		8778	20599	4793	4793	11631;11632	11632					0.024463691702294454
FFFFLFSFLFF	11	Unmodified	_FFFFLFSFLFF_					0	0	0			REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2900085449219	3	503.593287	1507.75803	0.40491	0.00020391	-0.28595	-0.000144	0.11897	5.9912E-05	503.5935199372825	58.946	1.7672	58.931	58.608	60.375	-0.014267					201	62	5	0	0	0	0.32951	1	14249	14249		10.315	2.8382	1	21734000	+		8779	20599	4793	4793	11633	11633					0.024463691702294454
FFFLFFFFFFF	11	Unmodified	_FFFLFFFFFFF_					0	0	0		ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.2681274414062	3	534.933532	1601.77877	-0.54817	-0.00029324	0.55618	0.00029752	0.0080022	4.2807E-06	535.2684780853749	34.684	1.8692	34.684	34.247	36.117	0					192	67	4	0	0	0	0.48173	1	6875	6875		0.50596	0	1	992740			8780	9649	4794	4794	11634	11634					0.0019495954988997255
FFFLFFFFFFF	11	Unmodified	_FFFLFFFFFFF_					0	0	0		ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.2672729492188	3	534.933532	1601.77877	-0.8776	-0.00046946	0.76188	0.00040755	-0.11572	-6.1905E-05	535.2686361335647	34.534	1.7084	34.609	34.185	35.893	0.075306					166	61	4	0	0	0	0.48173	1	6850	6850		0.50596	0	1	1084400			8781	9649	4794	4794	11635	11635					0.0019495954988997255
FFFLFFFFFFF	11	Unmodified	_FFFLFFFFFFF_					0	0	0		ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.2674560546875	3	534.933532	1601.77877	-0.1955	-0.00010458	0.22176	0.00011863	0.026261	1.4048E-05	535.268321586612	34.499	1.8877	34.576	34.138	36.026	0.077377					189	67	5	0	0	0	0.48486	1	6842	6842		0.094841	0	1	1015300			8782	9649	4794	4794	11636	11636					0.0019495954988997255
FFFLLLQRR	9	Unmodified	_FFFLLLQRR_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3729858398438	2	620.371675	1238.7288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.738	1	94.738	94.238	95.238	0								0	0	0	0.2672	1	25276	25276		0.52476	0	1				8783	1828	4795	4795	11637	11637					0.11898269664607142
FFFNFLYF	8	Unmodified	_FFFNFLYF_					0	0	0		ENST00000286091.8_1_7:148700721-148700865:-|nuORF	ENST00000286091.8_1_7:148700721-148700865:-|nuORF	ENST00000286091.8_1_7:148700721-148700865:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.8092651367188	2	572.778754	1143.54295	0.44716	0.00025612	2.2722	0.0013015	2.7194	0.0015576	572.7801546151194	45.479	0.56998	45.479	45.206	45.776	0					42	20	3	0	0	0	0.34092	1	10208	10208		13.508	1.8676	1	357760			8784	9141	4796	4796	11638	11638					-0.023075525747117354
FFGLGVAEQ	9	Unmodified	_FFGLGVAEQ_					0	0	0			REV__nc|ENSG00000162006|Q96KJ4|MSLNL	REV__nc|ENSG00000162006|Q96KJ4|MSLNL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.6343994140625	2	484.247818	966.481082	0.25963	0.00012573	0.50486	0.00024448	0.76449	0.0003702	484.24829316154523	91.091	0.22509	91.182	91.093	91.318	0.090668					36	14	4	0	0	0	0.25526	1	24141	24141		7.9102	2.6795	1	369730	+		8785	16960	4797	4797	11639	11639					-0.0034990399385605997
FFGLGVAEQ	9	Unmodified	_FFGLGVAEQ_					0	0	0			REV__nc|ENSG00000162006|Q96KJ4|MSLNL	REV__nc|ENSG00000162006|Q96KJ4|MSLNL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	484.247818	966.481082	0.22823	0.00011052	1.2566	0.00060852	1.4849	0.00071905	484.24826974474746	91.142	0.12777	91.142	91.111	91.239	0	-0.019678	0.0001827	NaN	7.9102	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216170	+		8786	16960	4797	4797							-0.0034990399385605997
FFHHDLELL	9	Unmodified	_FFHHDLELL_					0	0	0			REV__UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant	REV__UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8132934570312	2	585.800749	1169.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.576	1	94.576	94.076	95.076	0								0	0	0	0.25499	1	25227	25227		4.756	0.22714	1		+		8787	23352	4798	4798	11640	11640					0.008934318516139683
FFHLIIFAF	9	Unmodified	_FFHLIIFAF_					0	0	0		ENSG00000113583|ENST00000231512|C5orf15	ENSG00000113583|ENST00000231512|C5orf15	ENSG00000113583|ENST00000231512|C5orf15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.8234252929688	2	577.823495	1153.63244	0.2929	0.00016924	-0.30591	-0.00017676	-0.013009	-7.5171E-06	577.8232665862631	49.417	0.78784	49.462	48.989	49.776	0.044891					75	28	4	0	0	0	0.2616	1	11435	11435		14.582	0.67564	1	848220			8788	2514	4799	4799	11641	11641					0.061767021046534865
FFIAGRYEF	9	Unmodified	_FFIAGRYEF_					0	0	0		ENSG00000104812|ENST00000323798|GYS1;nc|ENSG00000104812|P13807-2|GYS1	ENSG00000104812|ENST00000323798|GYS1	ENSG00000104812|ENST00000323798|GYS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.2898559570312	2	575.290017	1148.56548	0.46958	0.00027014	-0.34562	-0.00019883	0.12396	7.1311E-05	575.2896221897091	65.845	1.4451	65.845	65.577	67.022	0					106	51	3	0	0	0	0.064268	1	16483	16483		47.594	28.337	1	1028100			8789	1918	4800	4800	11642	11642					-0.0028595317710369272
FFIAGRYEF	9	Unmodified	_FFIAGRYEF_					0	0	0		ENSG00000104812|ENST00000323798|GYS1;nc|ENSG00000104812|P13807-2|GYS1	ENSG00000104812|ENST00000323798|GYS1	ENSG00000104812|ENST00000323798|GYS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.2901611328125	2	575.290017	1148.56548	0.4924	0.00028327	-0.38834	-0.00022341	0.10406	5.9867E-05	575.2896586249096	65.685	1.2814	65.774	65.519	66.8	0.088882					94	46	3	0	0	0	0.026579	3	16372	16372;16422;16470		61.602	42.345	1	1226000			8790	1918	4800	4800	11643;11644;11645	11643					-0.0028595317710369272
FFIAGRYEF	9	Unmodified	_FFIAGRYEF_					0	0	0		ENSG00000104812|ENST00000323798|GYS1;nc|ENSG00000104812|P13807-2|GYS1	ENSG00000104812|ENST00000323798|GYS1	ENSG00000104812|ENST00000323798|GYS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.2900390625	2	575.290017	1148.56548	0.37317	0.00021468	-0.33857	-0.00019478	0.034597	1.9904E-05	575.2896619775601	65.828	1.2371	65.817	65.53	66.767	-0.01133					79	44	3	0	0	0	0.015924	1	16419	16419		70.332	51.075	1	1143600			8791	1918	4800	4800	11646	11646					-0.0028595317710369272
FFIFLNIF	8	Unmodified	_FFIFLNIF_					0	0	0		ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF	ENST00000466894.5_1_2:74754206-74756164:-|nuORF	ENST00000466894.5_1_2:74754206-74756164:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3240356445312	2	530.796946	1059.57934	0.092636	4.9171E-05	-1.5056	-0.00079917	-1.413	-0.00075	530.7958993083498	14.521	0.26742	14.417	14.273	14.54	-0.10466					12	8	2	0	0	0	0.34408	1	742	742		2.3027	0	1	24770			8792	10775	4801	4801	11647	11647					0.05193324321953696
FFIITWTL	8	Unmodified	_FFIITWTL_					0	0	0		ENST00000314940.6_1_5:137088427-137088670:-|nuORF	ENST00000314940.6_1_5:137088427-137088670:-|nuORF	ENST00000314940.6_1_5:137088427-137088670:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2653198242188	2	520.794404	1039.57425	0.57508	0.0002995	-0.41393	-0.00021557	0.16115	8.3927E-05	520.7941374750603	74.412	1.5294	74.412	73.92	75.449	0					71	53	2	0	0	0	0.34185	1	19014	19014		10.183	4.423	1	353110			8793	9349	4802	4802	11648	11648					0.0560502045937028
FFIITWTL	8	Unmodified	_FFIITWTL_					0	0	0		ENST00000314940.6_1_5:137088427-137088670:-|nuORF	ENST00000314940.6_1_5:137088427-137088670:-|nuORF	ENST00000314940.6_1_5:137088427-137088670:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7947998046875	2	520.794404	1039.57425	0.44787	0.00023325	-0.39241	-0.00020437	0.055455	2.8881E-05	520.7939441966256	74.23	0.87495	74.199	73.881	74.756	-0.030655					44	30	2	0	0	0	0.43727	1	19014	19014		10.183	0.83596	1	433190			8794	9349	4802	4802	11649	11649					0.0560502045937028
FFILPSVRP	9	Unmodified	_FFILPSVRP_					0	0	0			REV__ENST00000409614.1_1_15:44085043-44085169:+|nuORF	REV__ENST00000409614.1_1_15:44085043-44085169:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8633422851562	2	538.318577	1074.6226	0.35289	0.00018997	-0.76953	-0.00041425	-0.41663	-0.00022428	538.318048492823	74.201	0.50908	74.254	73.95	74.459	0.052361					23	17	2	0	0	0	0.24542	1	18986	18986		14.582	1.0738	1	430420	+		8795	20765	4803	4803	11650	11650					0.08827514099289147
FFIRQIHKF	9	Unmodified	_FFIRQIHKF_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000460638.1_1_22:38282753-38284468:+|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.73480224609375	3	412.573109	1234.6975	-0.11288	-4.6572E-05	-0.27722	-0.00011437	-0.3901	-0.00016094	412.572965084221	42.792	0.89926	42.792	42.567	43.467	0					50	32	2	0	0	0	0.22143	1	9374	9374		24.991	12.816	1	762000			8796	1536	4804	4804	11651	11651					0.08953696630487684
FFIVGLLWLAS	11	Unmodified	_FFIVGLLWLAS_					0	0	0		ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.369140625	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.16	1	116.18	115.68	116.68	0.020988								0	0	0	0.38114	1	30146	30146		1.3295	0.80477	1				8797	4713	4805	4805	11652	11652					0.10020911993387926
FFIVRDPF	8	Unmodified	_FFIVRDPF_					0	0	0		ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	ENSG00000115526|ENST00000264249|CHST10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7925415039062	2	520.781828	1039.5491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.744	1	73.744	73.244	74.244	0								0	0	0	0.35014	1	18863	18863		14.582	0.67564	1				8798	2656	4806	4806	11653	11653					0.030909656567928323
FFIYYEFPN	9	Unmodified	_FFIYYEFPN_					0	0	0			REV__ENST00000415574.6_1_2:132250659-132263934:+|nuORF	REV__ENST00000415574.6_1_2:132250659-132263934:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5503845214844	3	413.862214	1238.56481	0.13102	5.4224E-05	-1.6047	-0.00066411	-1.4736	-0.00060988	413.86174768398894	23.361	0.58165	23.273	23.018	23.599	-0.087608					38	20	3	0	0	0	0.26127	1	3359	3359		2.7352	0.10396	1	60168	+		8799	15822	4807	4807	11654	11654					-0.04492792616815677
FFIYYEFPN	9	Unmodified	_FFIYYEFPN_					0	0	0			REV__ENST00000415574.6_1_2:132250659-132263934:+|nuORF	REV__ENST00000415574.6_1_2:132250659-132263934:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	413.862214	1238.56481	-0.24496	-0.00010138	-1.0831	-0.00044826	-1.3281	-0.00054964	413.8618005280543	23.24	0.54445	23.24	22.904	23.448	0	-0.12996	0.00023143	NaN	2.7352	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55002	+		8800	15822	4807	4807							-0.04492792616815677
FFIYYEFPN	9	Unmodified	_FFIYYEFPN_					0	0	0			REV__ENST00000415574.6_1_2:132250659-132263934:+|nuORF	REV__ENST00000415574.6_1_2:132250659-132263934:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	413.862214	1238.56481	0.28547	0.00011815	-2.1773	-0.00090111	-1.8918	-0.00078296	414.1958622021895	23.636	0.085941	23.597	23.534	23.62	-0.038927	0.22661	-0.0011271	NaN	2.7352	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17983	+		8801	15822	4807	4807							-0.04492792616815677
FFKKPTEIM	9	Unmodified	_FFKKPTEIM_					0	0	0		ENST00000488866.1_1_2:44445059-44445709:+|nuORF	ENST00000488866.1_1_2:44445059-44445709:+|nuORF	ENST00000488866.1_1_2:44445059-44445709:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.3430786132812	2	570.809728	1139.6049	0.22693	0.00012953	-2.3912	-0.0013649	-2.1643	-0.0012354	570.8080780185229	73.458	0.64423	73.428	73.126	73.77	-0.029305					31	23	2	0	0	0	0.22061	1	18696	18696		24.021	0	1	84265			8802	11139	4808	4808	11655	11655					0.0406843078210386
FFKKPTEIM	9	Unmodified	_FFKKPTEIM_					0	0	0		ENST00000488866.1_1_2:44445059-44445709:+|nuORF	ENST00000488866.1_1_2:44445059-44445709:+|nuORF	ENST00000488866.1_1_2:44445059-44445709:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	570.809728	1139.6049	0.23615	0.0001348	0.21277	0.00012145	0.44891	0.00025624	570.8120240014406	73.199	0.43381	73.253	73.172	73.606	0.053833	-0.087598	0.0026446	NaN	36.127	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73450			8803	11139	4808	4808							0.0406843078210386
FFKPHWDEKF	10	Unmodified	_FFKPHWDEKF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.9199523925781	3	460.896029	1379.66626	0.45166	0.00020817	-0.18219	-8.397E-05	0.26947	0.0001242	460.8959005594937	48.426	0.40539	48.473	48.258	48.663	0.047523					23	14	3	0	0	0	0.31295	1	11025	11025		18.34	12.472	1	192370			8804	4853	4809	4809	11656	11656					-0.008389211942812835
FFKPHWDEKF	10	Unmodified	_FFKPHWDEKF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	460.896029	1379.66626	0.21578	9.9453E-05	-0.22993	-0.00010598	-0.014152	-6.5225E-06	461.230369915745	48.479	0.48345	48.479	48.238	48.721	0	0.033216	0.00012025	NaN	18.34	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310620			8805	4853	4809	4809							-0.008389211942812835
FFKPHWDEKF	10	Unmodified	_FFKPHWDEKF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	460.896029	1379.66626	0.39968	0.00018421	-0.40859	-0.00018832	-0.0089106	-4.1069E-06	460.89589194452657	48.342	0.4754	48.385	48.168	48.643	0.04332	-0.060521	-0.00012678	NaN	18.34	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290700			8806	4853	4809	4809							-0.008389211942812835
FFKPTGAD	8	Unmodified	_FFKPTGAD_					0	0	0			REV__nc|ENSG00000124181|P19174|PLCG1	REV__nc|ENSG00000124181|P19174|PLCG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7214660644531	2	441.721436	881.428318	0.17994	7.9482E-05	-0.30173	-0.00013328	-0.12179	-5.3797E-05	441.72127650225775	91.067	0.57539	91.067	90.853	91.429	0					69	41	2	0	0	0	0.45942	1	24241	24241		2.5775	0	1	1153200	+		8807	15213	4810	4810	11657	11657					-0.017138620566697682
FFKRYIHL	8	Unmodified	_FFKRYIHL_					0	0	0		ENST00000496191.1_1_7:104717586-104717914:+|nuORF	ENST00000496191.1_1_7:104717586-104717914:+|nuORF	ENST00000496191.1_1_7:104717586-104717914:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3233032226562	2	562.324194	1122.63383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.57	1	115.57	115.07	116.07	0								0	0	0	0.37992	1	29946	29946		0.79363	0.10326	1				8808	11228	4811	4811	11658	11658					0.07742336193427946
FFKTEIQYE	9	Unmodified	_FFKTEIQYE_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000426414.6_1_4:85730999-85781744:-|nuORF	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8117065429688	2	602.797872	1203.58119	0.53749	0.000324	-0.12094	-7.29E-05	0.41655	0.0002511	603.2995429285933	68.532	1.5099	68.603	68.044	69.554	0.071945					73	54	2	0	0	0	0.23007	1	17547	17547		19.257	1.1106	1	213940			8809	5711	4812	4812	11659	11659					-0.012457114507014921
FFKTEIQYE	9	Unmodified	_FFKTEIQYE_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000426414.6_1_4:85730999-85781744:-|nuORF	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8113403320312	2	602.797872	1203.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.664	1	69.642	69.142	70.142	-0.022087								0	0	0	0.19932	1	17603	17603		22.736	1.1993	1				8810	5711	4812	4812	11660	11660					-0.012457114507014921
FFKTEIQYE	9	Unmodified	_FFKTEIQYE_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000426414.6_1_4:85730999-85781744:-|nuORF	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	602.797872	1203.58119	0.55966	0.00033736	-0.12726	-7.6711E-05	0.4324	0.00026065	602.7974938156111	68.85	0.42129	68.85	68.675	69.097	0	0.12346	-5.5166E-06	NaN	19.257	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106020			8811	5711	4812	4812							-0.012457114507014921
FFLEEIQLGE	10	Unmodified	_FFLEEIQLGE_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.8109741210938	2	612.810979	1223.6074	0.32461	0.00019893	-0.51393	-0.00031494	-0.18932	-0.00011602	612.8105200600896	37.313	0.51623	37.401	37.062	37.578	0.087406					62	18	4	0	0	0	0.2811	1	7615	7615		22.736	0.078198	1	3728100			8812	6747	4813	4813	11661	11661					0.004545577207863971
FFLENKRR	8	Unmodified	_FFLENKRR_					0	0	0		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;RNF216-EIF2AK1|2|fusion;RNF216-EIF2AK1|1|fusion	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3159790039062	2	555.314358	1108.61416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.68	1	114.66	114.16	115.16	-0.019096								0	0	0	0.38004	1	29765	29765		0.69038	0	1				8813	438	4814	4814	11662	11662					0.06419960182665818
FFLFIVTI	8	Unmodified	_FFLFIVTI_					0	0	0			REV__nc|ENSG00000126777|Q86UP2-2|KTN1;REV__KTN1|p.T183Lfs*41|1|0.58|ENSG00000126777|chr14:55616538-55616538|A/-|frameshift_variant	REV__nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3006896972656	2	500.299322	998.584091	0.17509	8.7599E-05	1.2438	0.00062229	1.4189	0.00070989	500.3008603919604	22.675	0.70925	22.631	22.294	23.004	-0.044867					70	24	5	0	0	0	0.34185	1	3223	3223		10.183	0	1	146560	+		8814	15322;22775	4815	4815	11663	11663					0.08474208464758703
FFLFLVLWVV	10	Unmodified	_FFLFLVLWVV_					0	0	0			REV__ENST00000519245.1_1_6:112457126-112460429:-|nuORF	REV__ENST00000519245.1_1_6:112457126-112460429:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8826904296875	2	641.883553	1281.75255	-0.017375	-1.1153E-05	-1.0686	-0.00068594	-1.086	-0.00069709	641.882830968913	101.21	0.29335	101.21	101.13	101.42	0					55	39	2	0	0	0	0.41642	1	27040	27040		0.45834	0	1	65053	+		8815	21871	4816	4816	11664	11664					0.12294690378371342
FFLLHFCL	8	Unmodified	_FFLLHFCL_					0	0	0			REV__ENST00000375370.9_1_13:114294732-114294870:+|nuORF	REV__ENST00000375370.9_1_13:114294732-114294870:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2656860351562	2	520.275324	1038.53609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.094	1	74.146	73.646	74.646	0.052361								0	0	0	0.34461	1	18962	18962		17.087	3.5787	1		+		8816	20476	4817	4817	11665	11665					0.018368112730740904
FFLLKWPQ	8	Unmodified	_FFLLKWPQ_					0	0	0		nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF	nc|ENSG00000125450|Q9BW27-2|NUP85	nc|ENSG00000125450|Q9BW27-2|NUP85	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7987670898438	2	539.807845	1077.60114	0.09012	4.8648E-05	2.1787	0.0011761	2.2688	0.0012247	539.80915817781	12.602	0.38713	12.535	12.253	12.64	-0.067496					17	12	2	0	0	0	0.344	1	119	119		2.5775	0.27475	1	56877			8817	12082	4818	4818	11666	11666					0.06544129070539384
FFLQEENRR	9	Unmodified	_FFLQEENRR_					0	0	0		ENSG00000130433|ENST00000252729|CACNG6	ENSG00000130433|ENST00000252729|CACNG6	ENSG00000130433|ENST00000252729|CACNG6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2267150878906	3	413.5474	1237.62037	-0.3349	-0.0001385	-3.897	-0.0016116	-4.2319	-0.0017501	413.8800123966132	14.703	0.16928	14.703	14.649	14.819	0					6	5	2	0	0	0	0.26238	1	830	830		1.0715	0	1	9715.7			8818	3475	4819	4819	11667	11667					0.011064336234994698
FFLRESSVT	9	Unmodified	_FFLRESSVT_					0	0	0		ENST00000338745.10_3_3:18465390-18465639:-|nuORF	ENST00000338745.10_3_3:18465390-18465639:-|nuORF	ENST00000338745.10_3_3:18465390-18465639:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3253173828125	2	543.284931	1084.55531	0.35917	0.00019513	3.1521	0.0017125	3.5112	0.0019076	543.2867083648957	17.536	0.35184	17.418	17.137	17.489	-0.11739					15	12	2	0	0	0	0.26068	1	1676	1676		1.3295	0	1	29517			8819	9505	4820	4820	11668	11668					0.016414390976706272
FFLRNKEF	8	Unmodified	_FFLRNKEF_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.7846069335938	2	550.798009	1099.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.157	1	46.222	45.722	46.722	0.065048								0	0	0	0.35251	1	10367	10367		13.508	1.8676	1				8820	3371	4821	4821	11669	11669					0.035657530597973164
FFLYTNWS	8	Unmodified	_FFLYTNWS_					0	0	0			REV__ENST00000416904.4_1_12:53574525-53575604:+|nuORF	REV__ENST00000416904.4_1_12:53574525-53575604:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8632202148438	2	539.255643	1076.49673	0.44632	0.00024068	-3.1391	-0.0016928	-2.6928	-0.0014521	539.7552032986605	74.759	0.13195	74.811	74.758	74.89	0.052368					6	4	2	0	0	0	0.34297	1	19181	19181		6.3541	0	1	95895	+		8821	20826	4822	4822	11670	11670					-0.03845617476827101
FFMHLKMPF	9	Unmodified	_FFMHLKMPF_					0	0	0		ENST00000503013.2_1_4:114867436-114891654:-|nuORF	ENST00000503013.2_1_4:114867436-114891654:-|nuORF	ENST00000503013.2_1_4:114867436-114891654:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.3058471679688	2	599.301016	1196.58748	0.45449	0.00027238	-0.39733	-0.00023812	0.057164	3.4258E-05	599.3008116327095	91.671	0.94029	91.671	91.38	92.32	0					166	66	4	0	0	0	0.32733	1	24270	24270		4.756	1.4747	1	731950			8822	11286	4823	4823	11671	11671					-0.0029518802452912496
FFPVFYEF	8	Unmodified	_FFPVFYEF_					0	0	0			REV__ENST00000311172.11_1_11:72549565-72549709:-|nuORF	REV__ENST00000311172.11_1_11:72549565-72549709:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.2481689453125	2	548.262936	1094.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.8	1	17.739	17.239	18.239	-0.060429								0	0	0	0.36961	1	1738	1738		5.7604	1.816	1		+		8823	19898	4824	4824	11672	11672					-0.03215545328657754
FFQNEIYLF	9	Unmodified	_FFQNEIYLF_					0	0	0			REV__ENSG00000129219|ENST00000263088|PLD2	REV__ENSG00000129219|ENST00000263088|PLD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5377197265625	3	407.53773	1219.59136	-0.024109	-9.8252E-06	0.064077	2.6114E-05	0.039969	1.6289E-05	407.5377009044428	57.583	0.94322	57.583	57.299	58.243	0					70	33	4	0	0	0	0.24467	1	13892	13892		17.113	3.498	1	1408000	+		8824	15405	4825	4825	11673	11673					-0.009651037255025585
FFQNEIYLF	9	Unmodified	_FFQNEIYLF_					0	0	0			REV__ENSG00000129219|ENST00000263088|PLD2	REV__ENSG00000129219|ENST00000263088|PLD2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	407.53773	1219.59136	0.014715	5.997E-06	0.077793	3.1704E-05	0.092509	3.7701E-05	407.53770376983164	57.404	0.70943	57.49	57.21	57.92	0.085617	-0.10256	-3.629E-05	NaN	17.113	60	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1398900	+		8825	15405	4825	4825							-0.009651037255025585
FFQPLRLERF	10	Unmodified	_FFQPLRLERF_					0	0	0		ENST00000522293.5_1_5:179225178-179226553:-|nuORF;nc|ENSG00000161013|Q9UQ53-2|MGAT4B;ENSG00000161013|ENST00000292591|MGAT4B;nc|ENSG00000161013|Q9UQ53-3|MGAT4B	ENST00000522293.5_1_5:179225178-179226553:-|nuORF	ENST00000522293.5_1_5:179225178-179226553:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7764892578125	3	451.587307	1351.74009	0.2071	9.3525E-05	-0.5235	-0.00023641	-0.3164	-0.00014288	451.5870486137608	62.775	0.70411	62.775	62.552	63.256	0					41	25	2	0	0	0	0.31969	1	15618	15618		5.7834	0.73591	1	156790			8826	5504	4826	4826	11674	11674					0.07829046968049624
FFRDWDLEQ	9	Unmodified	_FFRDWDLEQ_					0	0	0		nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-4|AFF2	nc|ENSG00000155966|P51816-2|AFF2	nc|ENSG00000155966|P51816-2|AFF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.8749084472656	3	419.196256	1254.56694	0.017925	7.5139E-06	-2.8933	-0.0012129	-2.8754	-0.0012054	419.1953683138988	30.971	0.37515	30.998	30.866	31.241	0.027157					19	13	2	0	0	0	0.25756	1	5763	5763		4.1895	0.072875	1	118030			8827	5209	4827	4827	11675	11675					-0.05016363879008168
FFREIQLEPYI	11	Unmodified	_FFREIQLEPYI_					0	0	0			REV__ENSG00000077420|ENST00000376236|APBB1IP	REV__ENSG00000077420|ENST00000376236|APBB1IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.9289245605469	3	485.594127	1453.76055	0.13459	6.5355E-05	0.20454	9.9325E-05	0.33913	0.00016468	485.5942773623856	24.014	1.0929	24.014	23.669	24.762	0					108	36	4	0	0	0	0.46554	1	3588	3588		2.6312	0	1	548450	+		8828	13843	4828	4828	11676	11676					0.051821728372487996
FFRERQETL	9	Unmodified	_FFRERQETL_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.536376953125	3	409.21565	1224.62512	-0.27948	-0.00011437	0.069271	2.8347E-05	-0.21021	-8.6021E-05	409.21576162805746	28.365	1.2635	28.365	28.121	29.385	0					102	38	4	0	0	0	0.2422	1	4895	4895		14.405	0.18721	1	2334600			8829	2936	4829	4829	11677	11677					0.021793177662857488
FFRERQETL	9	Unmodified	_FFRERQETL_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5364685058594	3	409.21565	1224.62512	-0.22229	-9.0964E-05	-0.15117	-6.1862E-05	-0.37346	-0.00015283	409.21574456492715	28.381	1.2995	28.382	28.078	29.377	0.0004673					121	43	4	0	0	0	0.2422	1	4887	4887		14.405	2.1778	1	2118200			8830	2936	4829	4829	11678	11678					0.021793177662857488
FFRHASKNW	9	Unmodified	_FFRHASKNW_					0	0	0			REV__ENST00000509162.1_1_3:133368499-133368748:-|nuORF	REV__ENST00000509162.1_1_3:133368499-133368748:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.3208618164062	2	596.804157	1191.59376	0.65655	0.00039183	-0.96853	-0.00057802	-0.31198	-0.00018619	596.8032195024722	29.438	1.0257	29.438	29.169	30.194	0					82	36	4	0	0	0	0.25706	1	5188	5188		6.7232	0.51738	1	452920	+		8831	21786	4830	4830	11679	11679					0.005627895228371926
FFRHASKNW	9	Unmodified	_FFRHASKNW_					0	0	0			REV__ENST00000509162.1_1_3:133368499-133368748:-|nuORF	REV__ENST00000509162.1_1_3:133368499-133368748:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.8040161132812	2	596.804157	1191.59376	0.52863	0.00031549	-0.76792	-0.0004583	-0.23928	-0.00014281	596.803153157213	29.379	1.4874	29.392	29.134	30.622	0.012266					112	51	4	0	0	0	0.33719	1	5302	5302		3.2813	0.28607	1	435460	+		8832	21786	4830	4830	11680	11680					0.005627895228371926
FFRILCLV	8	Unmodified	_FFRILCLV_					0	0	0			REV__ENST00000335508.10_1_2:198268409-198268487:-|nuORF	REV__ENST00000335508.10_1_2:198268409-198268487:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2557067871094	2	505.796423	1009.57829	0.0084171	4.2573E-06	0.08475	4.2866E-05	0.093167	4.7123E-05	505.79647496749243	15.015	0.42577	14.951	14.76	15.186	-0.064414					28	14	3	0	0	0	0.344	1	948	948		2.5775	0	1	82058	+		8833	20065	4831	4831	11681	11681					0.07388786681440251
FFRLIKIKII	10	Unmodified	_FFRLIKIKII_					0	0	0		nc|ENSG00000184226|Q9HC56-2|PCDH9;ENSG00000184226|ENST00000377865|PCDH9	nc|ENSG00000184226|Q9HC56-2|PCDH9	nc|ENSG00000184226|Q9HC56-2|PCDH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.96075439453125	3	430.960193	1289.85875	-0.47249	-0.00020362	0.66377	0.00028606	0.19128	8.2435E-05	430.96032814393976	35.379	1.4144	35.379	34.892	36.307	0					184	51	5	0	0	0	0.41805	1	7257	7257		0.15932	0	1	2798900			8834	7439	4832	4832	11682	11682					0.22541445943738836
FFRNDVEL	8	Unmodified	_FFRNDVEL_					0	0	0			REV__ENST00000401087.3_3_1:149089877-149094694:-|nuORF	REV__ENST00000401087.3_3_1:149089877-149094694:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7865600585938	2	520.263999	1038.51345	0.81875	0.00042596	0.7578	0.00039425	1.5765	0.00082022	520.2641181753986	50.762	0.81998	50.772	50.426	51.246	0.0095634					70	30	3	0	0	0	0.26527	1	11878	11878		44.407	8.3628	1	1351700	+		8835	20708	4833	4833	11683	11683					-0.0042711659086762666
FFRNDVEL	8	Unmodified	_FFRNDVEL_					0	0	0			REV__ENST00000401087.3_3_1:149089877-149094694:-|nuORF	REV__ENST00000401087.3_3_1:149089877-149094694:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	520.263999	1038.51345	0.83666	0.00043529	0.7783	0.00040492	1.615	0.00084021	520.2641489797169	50.664	0.71829	50.709	50.372	51.09	0.044891	-0.0132	3.3577E-05	NaN	44.407	61	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1185900	+		8836	20708	4833	4833							-0.0042711659086762666
FFRRLERPAK	10	Unmodified	_FFRRLERPAK_					0	0	0		nc|ENSG00000142459|Q96CN4|EVI5L;ENSG00000142459|ENST00000538904|EVI5L	nc|ENSG00000142459|Q96CN4|EVI5L	nc|ENSG00000142459|Q96CN4|EVI5L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2637634277344	3	440.594684	1318.76222	0.031738	1.3984E-05	-0.31236	-0.00013762	-0.28062	-0.00012364	440.5945272982751	19.809	0.55243	19.809	19.493	20.045	0					37	19	2	0	0	0	0.32068	1	2356	2356		3.5871	0.26742	1	86010			8837	4443	4834	4834	11684	11684					0.1155927143649933
FFSITINSP	9	Unmodified	_FFSITINSP_					0	0	0			REV__ENST00000549302.1_1_12:101799535-101801423:-|nuORF	REV__ENST00000549302.1_1_12:101799535-101801423:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2681274414062	2	513.26875	1024.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.599	1	87.599	87.099	88.099	0								0	0	0	0.25631	1	23105	23105		4.3292	0	1		+		8838	22195	4835	4835	11685	11685					0.011666516946434058
FFSKFFERH	9	Unmodified	_FFSKFFERH_					0	0	0		ENST00000445336.2_1_X:74802783-74803698:+|nuORF	ENST00000445336.2_1_X:74802783-74803698:+|nuORF	ENST00000445336.2_1_X:74802783-74803698:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.8663330078125	2	622.81419	1243.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.011	1	78.069	77.569	78.569	0.058151								0	0	0	0.25858	1	20154	20154		3.5965	0	1				8839	10583	4836	4836	11686	11686					0.0017654046280313196
FFSRDRQKYLN	11	Unmodified	_FFSRDRQKYLN_					0	0	0		nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2469482421875	3	491.924759	1472.75245	0.27932	0.0001374	-0.47655	-0.00023443	-0.19723	-9.7022E-05	491.92454275719393	24.302	0.60708	24.302	23.998	24.605	0					53	20	3	0	0	0	0.33263	1	3694	3694		3.8459	1.4111	1	182690			8840	7996	4837	4837	11687	11687					0.03498038640486811
FFTGRGRSCM	10	Unmodified	_FFTGRGRSCM_					0	0	0		nc|ENSG00000112984|O95235-2|KIF20A;ENSG00000112984|ENST00000394894|KIF20A	nc|ENSG00000112984|O95235-2|KIF20A	nc|ENSG00000112984|O95235-2|KIF20A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.300537109375	2	581.268235	1160.52192	0.29283	0.00017021	-4.2583	-0.0024752	-3.9654	-0.002305	581.2671108901911	67.8	0.16843	67.8	67.673	67.842	0					7	5	2	0	0	0	0.318	1	17039	17039		7.2892	0.56607	1	160400			8841	2469	4838	4838	11688	11688					-0.051922092175345824
FFTHCFGHDI	10	Unmodified	_FFTHCFGHDI_					0	0	0		ENSG00000205409|ENST00000329322|OR52E6	ENSG00000205409|ENST00000329322|OR52E6	ENSG00000205409|ENST00000329322|OR52E6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.5149841308594	3	408.514931	1222.52296	0.0061465	2.5109E-06	0.53077	0.00021683	0.53692	0.00021934	408.5148877943618	74.225	2.8817	74.225	72.215	75.097	0					287	102	5	0	0	0	0.39745	1	19065	19065		1.9064	0	1	1006500			8842	8288	4839	4839	11689	11689					-0.07939671576968976
FFTLILKWTL	10	Unmodified	_FFTLILKWTL_					0	0	0			REV__ENSG00000198862|ENST00000361371|LTN1	REV__ENSG00000198862|ENST00000361371|LTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8827514648438	2	641.383917	1280.75328	0.61802	0.00039639	-0.63718	-0.00040868	-0.019165	-1.2292E-05	641.384807268107	93.247	1.8269	93.247	92.734	94.561	-0.00051117					305	153	3	0	0	0	0.39009	1	24979	24979		5.2969	1.1074	1	573760	+		8843	18878	4840	4840	11690	11690					0.12413485027445859
FFVHDRRKM	9	Unmodified	_FFVHDRRKM_					0	0	0		ENSG00000164604|ENST00000424100|GPR85	ENSG00000164604|ENST00000424100|GPR85	ENSG00000164604|ENST00000424100|GPR85	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.73480224609375	3	412.55372	1234.63933	-0.12012	-4.9556E-05	-0.70913	-0.00029256	-0.82925	-0.00034211	412.55334886257594	42.957	0.82542	42.957	42.407	43.233	0					52	29	2	0	0	0	0.26099	1	9374	9374		2.9952	0	1	457880			8844	5854	4841	4841	11691	11691					0.03139691713568027
FFVMEGPVLTT	11	Unmodified	_FFVMEGPVLTT_					0	0	0			REV__ENST00000373202.7_1_10:72639263-72639515:+|nuORF	REV__ENST00000373202.7_1_10:72639263-72639515:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.21441650390625	3	414.214259	1239.62095	0.26806	0.00011104	-0.76551	-0.00031708	-0.49745	-0.00020605	414.21460327939064	17.258	2.1742	17.198	16.81	18.984	-0.060429					247	77	6	0	0	0	0.3826	1	1663	1663		13.519	0.66272	1	10186000	+		8845	20430	4842	4842	11692	11692					0.010720922283553591
FFVNSLANFLM	11	Unmodified	_FFVNSLANFLM_					0	0	0			REV__ENST00000264245.8_2_3:119135520-119135586:+|nuORF	REV__ENST00000264245.8_2_3:119135520-119135586:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.8821105957031	3	434.889886	1301.64783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.434	1	17.316	16.816	17.816	-0.11739								0	0	0	0.38083	1	1631	1631		1.4551	0.26178	1		+		8846	19637	4843	4843	11693	11693					0.009072008395150988
FFWLALLS	8	Unmodified	_FFWLALLS_					0	0	0		GPX6|p.L15Wfs*9|1|0.24|ENSG00000198704|chr6:28515701-28515701|G/-|frameshift_variant	GPX6|p.L15Wfs*9|1|0.24|ENSG00000198704|chr6:28515701-28515701|G/-|frameshift_variant	GPX6|p.L15Wfs*9|1|0.24|ENSG00000198704|chr6:28515701-28515701|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7820129394531	2	498.781296	995.54804	0.3712	0.00018515	0.95666	0.00047717	1.3279	0.00066231	498.7819587374879	75.254	1.4893	75.254	74.731	76.22	0					94	53	3	0	0	0	0.42446	1	19500	19500		14.582	3.4672	1	393130			8847	12351	4844	4844	11694	11694					0.05008751287891755
FFYLPIIKH	9	Unmodified	_FFYLPIIKH_					0	0	0		KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant;nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.343017578125	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.06	1	113.06	112.56	113.56	0								0	0	0	0.26704	1	29370	29370		0.6015	0.076735	1				8848	4033	4845	4845	11695	11695					0.08828373650408139
FFYLPIIKH	9	Unmodified	_FFYLPIIKH_					0	0	0		KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant;nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3417358398438	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.57	1	116.55	116.05	117.05	-0.022781								0	0	0	0.26704	1	30195	30195		0.6015	0.14316	1				8849	4033	4845	4845	11696	11696					0.08828373650408139
FFYLPIIKH	9	Unmodified	_FFYLPIIKH_					0	0	0		KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant;nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3450927734375	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.79	1	113.81	113.31	114.31	0.014824								0	0	0	0.26704	1	29601	29601		0.6015	0.076735	1				8850	4033	4845	4845	11697	11697					0.08828373650408139
FFYLPIIKH	9	Unmodified	_FFYLPIIKH_					0	0	0		KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant;nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3428344726562	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.25	1	114.27	113.77	114.77	0.016708								0	0	0	0.26704	1	29713	29713		0.6015	0.076735	1				8851	4033	4845	4845	11698	11698					0.08828373650408139
FFYLPIIKH	9	Unmodified	_FFYLPIIKH_					0	0	0		KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant;nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3433837890625	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.59	1	116.61	116.11	117.11	0.020988								0	0	0	0.26704	1	30249	30249		0.6015	0.076735	1				8852	4033	4845	4845	11699	11699					0.08828373650408139
FFYLPIIKH	9	Unmodified	_FFYLPIIKH_					0	0	0		KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant;nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3431396484375	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.98	1	117	116.5	117.5	0.020988								0	0	0	0.26704	1	30339	30339		0.6015	0.076735	1				8853	4033	4845	4845	11700	11700					0.08828373650408139
FFYLPIIKH	9	Unmodified	_FFYLPIIKH_					0	0	0		KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant;nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3434448242188	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.7	1	119.73	119.23	120.23	0.027756								0	0	0	0.26704	1	30949	30949		0.6015	0	1				8854	4033	4845	4845	11701	11701					0.08828373650408139
FFYRNLDR	8	Unmodified	_FFYRNLDR_					0	0	0			REV__nc|ENSG00000116783|Q59H18-3|TNNI3K	REV__nc|ENSG00000116783|Q59H18-3|TNNI3K	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.8162841796875	2	565.790715	1129.56688	0.37166	0.00021028	-2.0801	-0.0011769	-1.7084	-0.0009666	565.7895369915735	45.404	0.39893	45.469	45.224	45.623	0.065048					17	14	2	0	0	0	0.34046	1	10177	10177		14.582	4.5078	1	139380	+		8855	22965	4846	4846	11702	11702					0.007276809116547156
FGASCLAPSHF	11	Unmodified	_FGASCLAPSHF_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.76318359375	2	568.763309	1135.51206	0.38647	0.00021981	1.0001	0.00056882	1.3866	0.00078863	568.7636502734413	29.88	1.4306	29.88	29.244	30.674	0					95	50	3	0	0	0	0.30767	1	5486	5486		21.537	2.175	1	291990			8856	7695	4847	4847	11703	11703					-0.05027073951282546
FGASCLAPSHF	11	Unmodified	_FGASCLAPSHF_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.76416015625	2	568.763309	1135.51206	0.00095616	5.4383E-07	1.2183	0.00069294	1.2193	0.00069349	568.7640606783021	29.88	1.3209	29.893	29.22	30.541	0.013474					100	45	4	0	0	0	0.41896	1	5379	5379		8.7454	0	1	295580			8857	7695	4847	4847	11704	11704					-0.05027073951282546
FGEKPIVIYK	10	Unmodified	_FGEKPIVIYK_					0	0	0		ALMS1|p.V2785Sfs*8|1|0.2|ENSG00000116127|chr2:73490309-73490310|-/A|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	ALMS1|p.V2785Sfs*8|1|0.2|ENSG00000116127|chr2:73490309-73490310|-/A|frameshift_variant	ALMS1|p.V2785Sfs*8|1|0.2|ENSG00000116127|chr2:73490309-73490310|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.2850952148438	2	597.350074	1192.6856	0.37394	0.00022337	0.40526	0.00024208	0.7792	0.00046545	597.3502507462642	55.51	0.4491	55.49	55.349	55.798	-0.019077					31	16	3	0	0	0	0.31691	1	13334	13334		9.3831	0.63772	1	550200			8858	28	4848	4848	11705	11705					0.09696035096658306
FGFKKWSL	8	Unmodified	_FGFKKWSL_					0	0	0		ENST00000518741.1_1_1:242048699-242058317:+|nuORF	ENST00000518741.1_1_1:242048699-242058317:+|nuORF	ENST00000518741.1_1_1:242048699-242058317:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2746887207031	2	506.78437	1011.55419	0.29466	0.00014933	0.49146	0.00024906	0.78612	0.00039839	506.7844361582085	67.375	0.76961	67.375	66.937	67.706	0					57	26	3	0	0	0	0.3366	1	16828	16828		18.135	3.2967	1	309300			8859	11448	4849	4849	11706	11706					0.048872695194063454
FGFKKWSL	8	Unmodified	_FGFKKWSL_					0	0	0		ENST00000518741.1_1_1:242048699-242058317:+|nuORF	ENST00000518741.1_1_1:242048699-242058317:+|nuORF	ENST00000518741.1_1_1:242048699-242058317:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.78437	1011.55419	0.15699	7.956E-05	1.1947	0.00060543	1.3516	0.00068499	506.7847091654485	67.347	0.69063	67.331	66.981	67.672	-0.016296	0.0036744	0.00048894	NaN	18.135	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181320			8860	11448	4849	4849							0.048872695194063454
FGFTIRVQK	9	Unmodified	_FGFTIRVQK_					0	0	0			REV__ENSG00000133131|ENST00000355610|MORC4	REV__ENSG00000133131|ENST00000355610|MORC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3185424804688	2	548.319109	1094.62366	0.4366	0.0002394	-1.1837	-0.00064903	-0.74707	-0.00040963	548.318214478261	107.64	0.10607	107.64	107.61	107.71	0.0067062					46	16	4	0	0	0	0.32733	1	28383	28383		4.756	0.81161	1	6789100	+		8861	15611	4850	4850	11707	11707					0.0801372846817685
FGFTIRVQK	9	Unmodified	_FGFTIRVQK_					0	0	0			REV__ENSG00000133131|ENST00000355610|MORC4	REV__ENSG00000133131|ENST00000355610|MORC4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	548.319109	1094.62366	0.015198	8.3335E-06	-0.80303	-0.00044032	-0.78783	-0.00043198	548.3184303769561	107.65	0.1244	107.65	107.6	107.73	0	0.0023679	0.00022485	NaN	4.756	52	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8716500	+		8862	15611	4850	4850							0.0801372846817685
FGFTIRVQK	9	Unmodified	_FGFTIRVQK_					0	0	0			REV__ENSG00000133131|ENST00000355610|MORC4	REV__ENSG00000133131|ENST00000355610|MORC4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.319109	1094.62366	0.29309	0.00016071	-1.0153	-0.00055671	-0.72221	-0.000396	548.3183655230091	107.65	0.11852	107.64	107.61	107.73	-0.0085678	-0.0020978	-7.9317E-06	NaN	4.756	49	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8445700	+		8863	15611	4850	4850							0.0801372846817685
FGFTIRVQK	9	Unmodified	_FGFTIRVQK_					0	0	0			REV__ENSG00000133131|ENST00000355610|MORC4	REV__ENSG00000133131|ENST00000355610|MORC4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	548.319109	1094.62366	0.4366	0.0002394	-1.1837	-0.00064903	-0.74707	-0.00040963	548.318214478261	107.64	0.10607	107.64	107.61	107.71	0.0067062	-0.00027013	-0.00019257	NaN	4.756	46	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6789100	+		8864	15611	4850	4850							0.0801372846817685
FGGAACLLWFW	11	Unmodified	_FGGAACLLWFW_					0	0	0		ENST00000420627.5_1_X:153576976-153577090:-|nuORF	ENST00000420627.5_1_X:153576976-153577090:-|nuORF	ENST00000420627.5_1_X:153576976-153577090:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.20648193359375	3	424.207438	1269.60049	-1.3708	-0.00058152	-0.7621	-0.00032329	-2.1329	-0.00090481	424.2070468488325	34.927	1.0399	35.002	34.604	35.644	0.075306					66	33	3	0	0	0	0.42126	1	6937	6937		8.4443	1.8209	1	917660			8865	10360	4851	4851	11708	11708					-0.023530336408157382
FGIALAKL	8	Unmodified	_FGIALAKL_					0	0	0			REV__nc|ENSG00000205754|G3V0H7|SLCO1B7	REV__nc|ENSG00000205754|G3V0H7|SLCO1B7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.2389831542969	2	416.768189	831.521825	0.53481	0.00022289	-3.8027	-0.0015848	-3.2678	-0.0013619	416.76676080707864	78.145	0.54249	78.203	77.927	78.47	0.058151					24	19	2	0	0	0	0.3439	1	20177	20177		0.79363	0	1	98646	+		8866	22944	4852	4852	11709	11709					0.09932482116414576
FGILTEKYRI	10	Unmodified	_FGILTEKYRI_					0	0	0		ENST00000514148.1_1_4:159603282-159605833:+|nuORF;nc|ENSG00000171503|Q16134-3|ETFDH;ENSG00000171503|ENST00000511912|ETFDH	ENST00000514148.1_1_4:159603282-159605833:+|nuORF	ENST00000514148.1_1_4:159603282-159605833:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.89471435546875	3	413.908046	1238.70231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.753	1	19.698	19.198	20.198	-0.055693								0	0	0	0.37666	1	2328	2328		3.5871	0.5148	1				8867	6553	4853	4853	11710	11710					0.09250535982619112
FGKKNLLQR	9	Unmodified	_FGKKNLLQR_					0	0	0			REV__ENST00000503273.1_1_5:176338353-176395858:-|nuORF	REV__ENST00000503273.1_1_5:176338353-176395858:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.337890625	2	552.337833	1102.66111	0.39307	0.00021711	0.064334	3.5534E-05	0.45741	0.00025264	552.3378319987331	24.408	1.077	24.335	23.905	24.982	-0.072559					95	33	4	0	0	0	0.33018	1	3848	3848		4.3292	0.38484	1	413240	+		8868	13990	4854	4854	11711	11711					0.11388819733770106
FGKNWNGVLV	10	Unmodified	_FGKNWNGVLV_					0	0	0			REV__THE1D-int_dup324|chr2:208859014-208859767:+|2.4653422611636326|0.1480688773718127|4.06|526.0|22|3|sense	REV__THE1D-int_dup324|chr2:208859014-208859767:+|2.4653422611636326|0.1480688773718127|4.06|526.0|22|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.8325805664062	2	567.308741	1132.60293	0.17768	0.0001008	-0.64997	-0.00036873	-0.47229	-0.00026794	567.3084155841066	23.11	0.37749	23.065	22.847	23.225	-0.044865					17	13	2	0	0	0	0.32132	1	3331	3331		0.35063	0.35063	1	48199	+		8869	23329	4855	4855	11712	11712					0.04193138088498927
FGKSIPSL	8	Unmodified	_FGKSIPSL_					0	0	0			REV__ENSG00000006116|ENST00000005284|CACNG3	REV__ENSG00000006116|ENST00000005284|CACNG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.920166015625	2	424.747453	847.480354	0.24772	0.00010522	-1.056	-0.00044852	-0.80825	-0.0003433	424.74734599956264	45.559	0.49081	45.559	45.341	45.832	0					26	17	2	0	0	0	0.31088	1	10244	10244		28.487	5.3384	1	463880	+		8870	13353	4856	4856	11713	11713					0.05051301357093507
FGLGLERLAM	10	Unmodified	_FGLGLERLAM_					0	0	0		ENSG00000145982|ENST00000274680|FARS2	ENSG00000145982|ENST00000274680|FARS2	ENSG00000145982|ENST00000274680|FARS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8300170898438	2	553.804977	1105.5954	0.40427	0.00022389	-2.4979	-0.0013833	-2.0936	-0.0011595	554.3054923893884	82.211	0.12329	82.211	82.138	82.262	0					5	3	2	0	0	0	0.30586	1	21434	21434		13.906	0	1	128560			8871	4683	4857	4857	11714	11714					0.046826624965888186
FGLLAVRRH	9	Unmodified	_FGLLAVRRH_					0	0	0			REV__ENST00000568339.5_1_16:85838717-85838885:+|nuORF	REV__ENST00000568339.5_1_16:85838717-85838885:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2937622070312	2	534.824892	1067.63523	0.25882	0.00013842	-0.96945	-0.00051849	-0.71063	-0.00038006	534.8241973483678	53.469	0.54376	53.525	53.325	53.869	0.056255					35	20	2	0	0	0	0.24739	1	12719	12719		8.5933	0	1	432170	+		8872	22391	4858	4858	11715	11715					0.10411970282189031
FGLSATKK	8	Unmodified	_FGLSATKK_					0	0	0			REV__ENSG00000198246|ENST00000373189|SLC29A3	REV__ENSG00000198246|ENST00000373189|SLC29A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.25286865234375	2	426.252903	850.491253	-0.46283	-0.00019728	0.85974	0.00036647	0.3969	0.00016918	426.25309071356	12.856	0.32265	12.788	12.671	12.993	-0.067496					22	10	3	0	0	0	0.45431	1	272	272		4.3292	2.0265	1	82744	+		8873	18812	4859	4859	11716	11716					0.06002703731383008
FGLTGLVYIVR	11	Unmodified	_FGLTGLVYIVR_					0	0	0			REV__nc|ENSG00000022567|Q5BKX6-2|SLC45A4	REV__nc|ENSG00000022567|Q5BKX6-2|SLC45A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8689575195312	2	619.368798	1236.72304	0.11984	7.4222E-05	1.672	0.0010356	1.7918	0.0011098	619.3707405203077	91.712	1.9109	91.803	91.166	93.077	0.090675					275	137	3	0	0	0	0.44523	1	24635	24635		5.2969	0	1	768030	+		8874	13466	4860	4860	11717	11717					0.11415126362248884
FGNLNCLT	8	Unmodified	_FGNLNCLT_					0	0	0			REV__nc|ENSG00000108684|Q16515|ASIC2	REV__nc|ENSG00000108684|Q16515|ASIC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2103271484375	2	441.212921	880.411288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.11	1	104.11	103.61	104.61	0.0011444								0	0	0	0.37078	1	27673	27673		5.2307	0	1		+		8875	22935	4861	4861	11718	11718					-0.033701059341410655
FGNPGLGF	8	Unmodified	_FGNPGLGF_					0	0	0			REV__ENST00000343004.9_1_X:133931066-133931180:-|nuORF	REV__ENST00000343004.9_1_X:133931066-133931180:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.1882019042969	2	404.703046	807.391539	-0.24064	-9.7389E-05	0.65612	0.00026553	0.41547	0.00016814	404.70313164471764	23.671	0.57891	23.671	23.48	24.058	0					39	19	3	0	0	0	0.34046	1	3539	3539		14.582	4.3983	1	75310	+		8876	20129	4862	4862	11719	11719					-0.01986113882560403
FGPLALLIVK	10	Unmodified	_FGPLALLIVK_					0	0	0			REV__ENST00000531905.1_1_11:65631192-65631594:+|nuORF	REV__ENST00000531905.1_1_11:65631192-65631594:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8525390625	2	535.852253	1069.68995	0.36652	0.0001964	0.39625	0.00021233	0.76277	0.00040873	535.8523092808297	71.686	0.5444	71.743	71.513	72.057	0.056572					42	19	3	0	0	0	0.36002	1	18252	18252		10.824	0.75	1	563310	+		8877	22015	4863	4863	11720	11720					0.1578954431022339
FGPLALLIVK	10	Unmodified	_FGPLALLIVK_					0	0	0			REV__ENST00000531905.1_1_11:65631192-65631594:+|nuORF	REV__ENST00000531905.1_1_11:65631192-65631594:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2890014648438	2	535.852253	1069.68995	0.56294	0.00030165	0.0031514	1.6887E-06	0.56609	0.00030334	535.8521664931768	71.725	0.61515	71.698	71.477	72.092	-0.027275					35	21	2	0	0	0	0.3156	1	18296	18296		6.7232	0.51738	1	522910	+		8878	22015	4863	4863	11721	11721					0.1578954431022339
FGRDCTIRPG	10	Unmodified	_FGRDCTIRPG_					0	0	0		METTL14|p.S351C|1|0.34|ENSG00000145388|chr4:118705806-118705806|A/T|missense_variant	METTL14|p.S351C|1|0.34|ENSG00000145388|chr4:118705806-118705806|A/T|missense_variant	METTL14|p.S351C|1|0.34|ENSG00000145388|chr4:118705806-118705806|A/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2799682617188	2	561.279657	1120.54476	0.55314	0.00031047	-0.12568	-7.0539E-05	0.42746	0.00023993	561.2795026136151	20.473	1.4671	20.42	19.819	21.286	-0.05291					119	52	4	0	0	0	0.39009	1	2495	2495		5.2969	0.96765	1	759870			8879	12541	4864	4864	11722	11722					-0.010688668284274172
FGREYIDHLK	10	Unmodified	_FGREYIDHLK_					0	0	0		ENST00000598240.1_1_19:19105804-19136912:-|nuORF;nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	ENST00000598240.1_1_19:19105804-19136912:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.55914306640625	3	426.559417	1276.65642	-0.13782	-5.879E-05	-0.41891	-0.00017869	-0.55673	-0.00023748	426.55910293660736	24.307	0.7085	24.307	23.998	24.706	0					59	23	3	0	0	0	0.38745	1	3686	3686		5.7834	0.38072	1	151910			8880	790	4865	4865	11723	11723					0.029158908003410033
FGRILEEKKLS	11	Unmodified	_FGRILEEKKLS_					0	0	0		ENSG00000110887|ENST00000228476|DAO	ENSG00000110887|ENST00000228476|DAO	ENSG00000110887|ENST00000228476|DAO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2638244628906	3	440.594238	1318.76089	0.18833	8.2978E-05	0.39869	0.00017566	0.58702	0.00025864	440.594360575109	20.072	0.53249	19.956	19.7	20.232	-0.11592					31	18	2	0	0	0	0.33169	1	2382	2382		2.084	0	1	85114			8881	2335	4866	4866	11724	11724					0.11425592557088748
FGRSEALKR	9	Unmodified	_FGRSEALKR_					0	0	0		nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;ENST00000491239.2_1_1:27614218-27630434:+|nuORF	nc|ENSG00000142784|Q8N5D0-5|WDTC1	nc|ENSG00000142784|Q8N5D0-5|WDTC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.29345703125	2	532.30399	1062.59343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.407	1	31.407	30.907	31.907	0								0	0	0	0.21673	1	5865	5865		17.113	1.8644	1				8882	12733	4867	4867	11725	11725					0.06463369802986563
FGSIAGLVRKL	11	Unmodified	_FGSIAGLVRKL_					0	0	0			REV__ENST00000446716.5_1_2:220081206-220083551:-|nuORF	REV__ENST00000446716.5_1_2:220081206-220083551:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8088989257812	2	580.861141	1159.70773	0.35923	0.00020867	-0.19553	-0.00011358	0.1637	9.5089E-05	580.8609202823972	43.665	0.23463	43.749	43.631	43.866	0.083996					13	8	2	0	0	0	0.3259	1	9598	9598		9.3831	0	1	225640	+		8883	21084	4868	4868	11726	11726					0.13426259565085275
FGSVEVHNLQ	10	Unmodified	_FGSVEVHNLQ_					0	0	0		ENSG00000004468|ENST00000226279|CD38	ENSG00000004468|ENST00000226279|CD38	ENSG00000004468|ENST00000226279|CD38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.7632446289062	2	565.285463	1128.55637	0.40676	0.00022994	0.56904	0.00032167	0.97581	0.00055161	565.2856142278657	52.317	0.59743	52.368	51.926	52.523	0.050575					26	21	2	0	0	0	0.27337	1	12230	12230		29.082	8.628	1	425240			8884	308	4869	4869	11727	11727					-0.002763465334282955
FGVILGERV	9	Unmodified	_FGVILGERV_					0	0	0			REV__nc|ENSG00000149823|Q9UID3-2|VPS51	REV__nc|ENSG00000149823|Q9UID3-2|VPS51	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7850036621094	2	495.292559	988.570566	0.79104	0.0003918	1.7371	0.00086035	2.5281	0.0012521	495.2936100958361	45.815	0.3636	45.815	45.64	46.003	0					20	12	2	0	0	0	0.21389	1	10223	10223		19.257	0	1	219720	+		8885	16485	4870	4870	11728	11728					0.07582350685515848
FGVSREDGPF	10	Unmodified	_FGVSREDGPF_					0	0	0		nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3079833984375	2	555.764363	1109.51417	0.26441	0.00014695	1.7353	0.00096439	1.9997	0.0011113	555.7652631556708	80.007	0.39481	79.978	79.776	80.171	-0.028931					22	13	2	0	0	0	0.30093	1	20759	20759		16.149	0	1	145840			8886	5438	4871	4871	11729	11729					-0.03620321941821203
FGVTEFFLL	9	Unmodified	_FGVTEFFLL_					0	0	0		ENSG00000205327|ENST00000548615|OR6C68	ENSG00000205327|ENST00000548615|OR6C68	ENSG00000205327|ENST00000548615|OR6C68	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2687377929688	2	536.789318	1071.56408	0.3627	0.00019469	-0.076535	-4.1083E-05	0.28616	0.00015361	536.7894510434228	93.645	0.59442	93.645	93.454	94.048	0					78	47	3	0	0	0	0.28128	1	24912	24912		11.64	0	1	142960			8887	8282	4872	4872	11730	11730					0.031164127341526182
FGWERSLLS	9	Unmodified	_FGWERSLLS_					0	0	0			REV__ENST00000540647.5_1_12:132402872-132405903:+|nuORF	REV__ENST00000540647.5_1_12:132402872-132405903:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.8059692382812	2	547.785099	1093.55564	0.66258	0.00036295	0.56854	0.00031144	1.2311	0.00067439	547.7853268081827	51.008	0.85088	51.055	50.822	51.672	0.046574					64	31	3	0	0	0	0.26612	1	11939	11939		13.906	13.906	1	1010200	+		8888	17977	4873	4873	11731	11731					0.012608588175226032
FGWERSLLS	9	Unmodified	_FGWERSLLS_					0	0	0			REV__ENST00000540647.5_1_12:132402872-132405903:+|nuORF	REV__ENST00000540647.5_1_12:132402872-132405903:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8057250976562	2	547.785099	1093.55564	0.68847	0.00037713	0.56088	0.00030724	1.2494	0.00068438	547.7853151662636	51.147	0.6189	51.156	50.887	51.506	0.0095634					53	23	3	0	0	0	0.25314	1	11950	11950		15.847	1.2655	1	1138600	+		8889	17977	4873	4873	11732	11732					0.012608588175226032
FGWFLVRW	8	Unmodified	_FGWFLVRW_					0	0	0			REV__nc|ENSG00000134769|Q9Y4J8-15|DTNA	REV__nc|ENSG00000134769|Q9Y4J8-15|DTNA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7972412109375	2	555.797812	1109.58107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.58	1	115.56	115.06	116.06	-0.020988								0	0	0	0.37992	1	29969	29969		0.79363	0.19213	1		+		8890	22995	4874	4874	11733	11733					0.030663781305975135
FGWFLVRW	8	Unmodified	_FGWFLVRW_					0	0	0			REV__nc|ENSG00000134769|Q9Y4J8-15|DTNA	REV__nc|ENSG00000134769|Q9Y4J8-15|DTNA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7969360351562	2	555.797812	1109.58107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.3	1	118.33	117.83	118.83	0.026253								0	0	0	0.37992	1	30638	30638		0.79363	0.10326	1		+		8891	22995	4874	4874	11734	11734					0.030663781305975135
FHACPCFQ	8	Unmodified	_FHACPCFQ_					0	0	0		ENST00000268058.7_1_15:74337649-74338387:+|nuORF	ENST00000268058.7_1_15:74337649-74338387:+|nuORF	ENST00000268058.7_1_15:74337649-74338387:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.6939697265625	2	476.693841	951.373128	0.031742	1.5131E-05	0.59011	0.0002813	0.62185	0.00029643	476.6938103747115	16.401	0.33215	16.401	16.242	16.574	0					19	11	2	0	0	0	0.46461	1	1327	1327		0.79363	0.10326	1	24182			8892	9064	4875	4875	11735	11735					-0.1045031512044261
FHACPCFQ	8	Unmodified	_FHACPCFQ_					0	0	0		ENST00000268058.7_1_15:74337649-74338387:+|nuORF	ENST00000268058.7_1_15:74337649-74338387:+|nuORF	ENST00000268058.7_1_15:74337649-74338387:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	476.693841	951.373128	0.18947	9.032E-05	1.0362	0.00049397	1.2257	0.00058429	476.6938876555613	16.385	0.3525	16.323	16.205	16.558	-0.062534	-0.039448	0.00021483	NaN	0.79363	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24747			8893	9064	4875	4875							-0.1045031512044261
FHEAVHAPLV	10	Unmodified	_FHEAVHAPLV_					0	0	0			REV__nc|ENSG00000078295|Q08462-2|ADCY2	REV__nc|ENSG00000078295|Q08462-2|ADCY2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.76708984375	2	560.300916	1118.58728	0.082103	4.6002E-05	-2.62	-0.001468	-2.5379	-0.001422	560.3000855345399	31.475	0.63569	31.475	31.231	31.867	0					39	22	4	0	0	0	0.27772	1	5990	5990		26.884	9.9414	1	1224200	+		8894	13856	4876	4876	11736	11736					0.032728515714552486
FHEPFDVALL	10	Unmodified	_FHEPFDVALL_					0	0	0			REV__nc|ENSG00000166349|P15918-2|RAG1	REV__nc|ENSG00000166349|P15918-2|RAG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8291015625	2	594.308406	1186.60226	0.94204	0.00055986	0.1054	6.2641E-05	1.0474	0.0006225	594.3092021698045	77.955	0.52077	77.924	77.625	78.146	-0.030426					35	18	3	0	0	0	0.30079	1	20131	20131		20.454	0	1	156820	+		8895	17312	4877	4877	11737	11737					0.01642298648812357
FHEWRSFYF	9	Unmodified	_FHEWRSFYF_					0	0	0			REV__ENST00000445008.6_1_11:130131193-130131319:-|nuORF	REV__ENST00000445008.6_1_11:130131193-130131319:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.6239013671875	3	440.204974	1317.59309	-0.2151	-9.4686E-05	1.3486	0.00059367	1.1335	0.00049898	440.2058527553803	27.62	0.62819	27.599	27.321	27.949	-0.021412					34	21	3	0	0	0	0.26238	1	4673	4673		1.0715	0	1	154680	+		8896	21071	4878	4878	11738	11738					-0.053000499168774695
FHFHPSHL	8	Unmodified	_FHFHPSHL_					0	0	0		nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;ENSG00000133816|ENST00000683283|MICAL2	nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2529602050781	2	511.253769	1020.49298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.76	1	112.77	112.27	113.27	0.014824								0	0	0	0.37724	1	29340	29340		2.3027	0	1				8897	12703	4879	4879	11739	11739					-0.01644242460008627
FHFHPSHL	8	Unmodified	_FHFHPSHL_					0	0	0		nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;ENSG00000133816|ENST00000683283|MICAL2	nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2536315917969	2	511.253769	1020.49298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.91	1	117.93	117.43	118.43	0.023476								0	0	0	0.37724	1	30550	30550		2.3027	0	1				8898	12703	4879	4879	11740	11740					-0.01644242460008627
FHFRHPKRSV	10	Unmodified	_FHFRHPKRSV_					0	0	0		nc|ENSG00000104765|O60238-2|BNIP3L;ENSG00000104765|ENST00000380629|BNIP3L	nc|ENSG00000104765|O60238-2|BNIP3L	nc|ENSG00000104765|O60238-2|BNIP3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.5639343261719	3	437.579146	1309.71561	0.27149	0.0001188	1.1508	0.00050357	1.4223	0.00062237	437.57958272681304	47.839	0.74004	47.839	47.137	47.877	0					41	26	2	0	0	0	0.31929	1	10722	10722		4.4062	4.4062	1	934850			8899	1914	4880	4880	11741	11741					0.07313831605210908
FHFRVAFRK	9	Unmodified	_FHFRVAFRK_					0	0	0			REV__ENST00000418905.1_1_3:40547608-40547815:+|nuORF	REV__ENST00000418905.1_1_3:40547608-40547815:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.2311096191406	3	403.233087	1206.67743	-0.42838	-0.00017274	-2.18	-0.00087906	-2.6084	-0.0010518	403.2313482528955	14.982	0.65746	14.918	14.618	15.275	-0.064414					63	22	4	0	0	0	0.30459	1	834	834		8.1555	0.21013	1	108140	+		8900	20838	4881	4881	11742	11742					0.08235945690557855
FHGVQDAR	8	Unmodified	_FHGVQDAR_					0	0	0			REV__nc|ENSG00000196277|Q14831-5|GRM7	REV__nc|ENSG00000196277|Q14831-5|GRM7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2327880859375	2	465.233033	928.451513	-0.064011	-2.978E-05	0.36272	0.00016875	0.29871	0.00013897	465.23303335204673	17.543	1.0024	17.543	17.296	18.299	0					79	34	4	0	0	0	0.4419	1	1628	1628		8.5933	8.5933	1	895110	+		8901	18638	4882	4882	11743	11743					-0.015574232193444004
FHGVQDAR	8	Unmodified	_FHGVQDAR_					0	0	0			REV__nc|ENSG00000196277|Q14831-5|GRM7	REV__nc|ENSG00000196277|Q14831-5|GRM7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	465.233033	928.451513	-0.064011	-2.978E-05	0.36272	0.00016875	0.29871	0.00013897	465.23303335204673	17.543	1.0024	17.543	17.296	18.299	0	-0.077521	-0.00012051	NaN	8.5933	79	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	895110	+		8902	18638	4882	4882							-0.015574232193444004
FHGVQDAR	8	Unmodified	_FHGVQDAR_					0	0	0			REV__nc|ENSG00000196277|Q14831-5|GRM7	REV__nc|ENSG00000196277|Q14831-5|GRM7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	465.233033	928.451513	-0.18281	-8.5047E-05	0.70551	0.00032823	0.5227	0.00024318	465.23316816388956	17.798	0.94333	17.68	17.414	18.358	-0.11739	0.059908	0.00019844	NaN	8.5933	82	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1016600	+		8903	18638	4882	4882							-0.015574232193444004
FHIHDVILLGF	11	Unmodified	_FHIHDVILLGF_					0	0	0			REV__nc|ENSG00000159063|Q9BVK2-2|ALG8	REV__nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2674560546875	3	437.580041	1309.71829	0.1229	5.3779E-05	-0.72679	-0.00031803	-0.60389	-0.00026425	437.57973391792746	46.489	0.48137	46.541	46.229	46.71	0.052574					21	17	2	0	0	0	0.33094	1	10388	10388		4.7159	0	1	237170	+		8904	16831	4883	4883	11744	11744					0.07582242219496038
FHILVPFSEI	10	Unmodified	_FHILVPFSEI_					0	0	0			REV__ENST00000064778.8_1_11:73115379-73115817:-|nuORF	REV__ENST00000064778.8_1_11:73115379-73115817:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.7857055664062	2	601.334424	1200.6543	0.56434	0.00033936	-0.43862	-0.00026376	0.12572	7.5598E-05	601.3338078832813	63.015	0.35105	63.111	62.905	63.256	0.095722					19	12	2	0	0	0	0.31267	1	15527	15527		14.838	1.7958	1	264800	+		8905	19379	4884	4884	11745	11745					0.06199462062568273
FHKLLNKGE	9	Unmodified	_FHKLLNKGE_					0	0	0			REV__ENSG00000010404|ENST00000340855|IDS	REV__ENSG00000010404|ENST00000340855|IDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.291259765625	2	543.308741	1084.60293	0.40014	0.0002174	-1.1788	-0.00064044	-0.77864	-0.00042304	543.8100180754208	26.871	0.73864	26.871	26.499	27.237	0					68	25	4	0	0	0	0.24467	1	4434	4434		17.113	3.2068	1	258690	+		8906	13415	4885	4885	11746	11746					0.06401138088517655
FHKMGVGRLDM	11	Unmodified	_FHKMGVGRLDM_					0	0	0		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8880920410156	3	430.88637	1289.63728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.433	1	23.388	22.888	23.888	-0.044867								0	0	0	0.37382	1	3444	3444		1.2148	0	1				8907	6135	4886	4886	11747	11747					0.004048949134812574
FHKPFLYPT	9	Unmodified	_FHKPFLYPT_					0	0	0			REV__ENST00000484423.5_1_1:145576054-145578613:+|nuORF	REV__ENST00000484423.5_1_1:145576054-145578613:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3280029296875	2	575.30821	1148.60187	-0.13314	-7.6597E-05	4.2647	0.0024535	4.1316	0.0023769	575.8108784640635	12.147	0.1579	12.147	12.087	12.245	0					11	7	2	0	0	0	0.26257	1	67	67		0.52476	0.066424	1	39020	+		8908	21532	4887	4887	11748	11748					0.03350923719608545
FHKPKLLKP	9	Unmodified	_FHKPKLLKP_					0	0	0		ENSG00000165633|ENST00000332853|VSTM4	ENSG00000165633|ENST00000332853|VSTM4	ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3555297851562	2	554.355494	1106.69644	0.50079	0.00027762	0.32955	0.00018269	0.83035	0.00046031	554.3554709602049	36.585	0.90091	36.585	36.358	37.259	0					68	31	3	0	0	0	0.33018	1	7504	7504		4.3292	2.485	1	298160			8909	5984	4888	4888	11749	11749					0.14735482261608013
FHKQLKAVNK	10	Unmodified	_FHKQLKAVNK_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.55706787109375	3	404.911902	1211.71388	-0.30438	-0.00012325	-1.2504	-0.00050631	-1.5548	-0.00062956	404.91039017556625	22.74	0.66734	22.74	22.505	23.173	0					41	22	3	0	0	0	0.31969	1	3327	3327		5.7834	2.1964	1	32009	+		8910	13306	4889	4889	11750	11750					0.11648777796585819
FHLERRPL	8	Unmodified	_FHLERRPL_					0	0	0		ENSG00000164946|ENST00000380880|FREM1;nc|ENSG00000164946|Q5H8C1-3|FREM1;nc|ENSG00000164946|Q5H8C1-2|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.8219604492188	2	534.309075	1066.6036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.111	1	12.111	11.611	12.611	0								0	0	0	0.35843	1	29	29		10.824	3.215	1				8911	5905	4890	4890	11751	11751					0.07295977528224284
FHLIVVATYIP	11	Unmodified	_FHLIVVATYIP_					0	0	0		ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.3275146484375	2	636.871174	1271.72779	0.74285	0.0004731	-1.4685	-0.00093523	-0.72562	-0.00046213	636.8700328212307	63.531	0.42173	63.522	63.297	63.719	-0.0085526					21	14	2	0	0	0	0.3259	1	15759	15759		13.906	0.86358	1	290130			8912	6855	4891	4891	11752	11752					0.10280010505039172
FHLSPEQRW	9	Unmodified	_FHLSPEQRW_					0	0	0			REV__ENST00000532574.5_1_1:145811866-145826998:-|nuORF	REV__ENST00000532574.5_1_1:145811866-145826998:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3225708007812	2	600.301447	1198.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.51	1	105.52	105.02	106.02	0.0031738								0	0	0	0.25631	1	27976	27976		4.3292	0.13973	1		+		8913	21448	4892	4892	11753	11753					-0.0030093405964635167
FHNFEECWK	9	Unmodified	_FHNFEECWK_					0	0	0			REV__ENST00000602629.1_1_2:171073857-171238605:+|nuORF	REV__ENST00000602629.1_1_2:171073857-171238605:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2267150878906	3	413.846569	1238.51788	-0.084092	-3.4801E-05	-1.9296	-0.00079855	-2.0137	-0.00083335	413.84585773971594	14.873	0.25521	14.808	14.7	14.955	-0.064413					11	8	2	0	0	0	0.26245	1	858	858		0.96228	0.80295	1	17396	+		8914	13748	4893	4893	11754	11754					-0.09183975439623282
FHPFWASI	8	Unmodified	_FHPFWASI_					0	0	0			REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7942810058594	2	502.75307	1003.49159	0.17781	8.9395E-05	1.3057	0.00065644	1.4835	0.00074584	502.75355054262616	18.559	0.56359	18.559	18.332	18.895	0					30	19	2	0	0	0	0.34218	1	1962	1962		9.3474	0	1	64673	+		8915	22503	4894	4894	11755	11755					-0.010018765487643577
FHPFWASI	8	Unmodified	_FHPFWASI_					0	0	0			REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.7940979003906	2	502.75307	1003.49159	-0.023592	-1.1861E-05	1.4382	0.00072308	1.4147	0.00071122	502.7536934368194	18.675	0.70479	18.616	18.372	19.077	-0.058174					33	24	2	0	0	0	0.34046	1	2028	2028		14.582	0	1	104590	+		8916	22503	4894	4894	11756	11756					-0.010018765487643577
FHPQRMIS	8	Unmodified	_FHPQRMIS_					0	0	0		ENSG00000243716|ENST00000424340|NPIPB5	ENSG00000243716|ENST00000424340|NPIPB5	ENSG00000243716|ENST00000424340|NPIPB5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2745361328125	2	508.260736	1014.50692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.252	1	25.22	24.72	25.72	-0.031408								0	0	0	0.35466	1	3994	3994		12.532	0.29089	1				8917	8560	4895	4895	11757	11757					0.0002466697678755736
FHPQRMIS	8	Unmodified	_FHPQRMIS_					0	0	0		ENSG00000243716|ENST00000424340|NPIPB5	ENSG00000243716|ENST00000424340|NPIPB5	ENSG00000243716|ENST00000424340|NPIPB5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.27435302734375	2	508.260736	1014.50692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.271	1	25.24	24.74	25.74	-0.031408								0	0	0	0.35466	1	4000	4000		12.532	1.7076	1				8918	8560	4895	4895	11758	11758					0.0002466697678755736
FHPWTECIF	9	Unmodified	_FHPWTECIF_					0	0	0		ENST00000502782.5_1_5:34838982-34863053:+|nuORF	ENST00000502782.5_1_5:34838982-34863053:+|nuORF	ENST00000502782.5_1_5:34838982-34863053:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.2675170898438	2	590.268227	1178.5219	0.056302	3.3233E-05	-0.069924	-4.1274E-05	-0.013622	-8.0407E-06	590.2680516853654	14.632	0.55558	14.566	14.289	14.845	-0.066068					30	19	2	0	0	0	0.35512	1	825	825		0.6015	0	1	40692			8919	11281	4896	4896	11759	11759					-0.06021885945892791
FHPWWQHR	8	Unmodified	_FHPWWQHR_					0	0	0		ENST00000473357.1_1_22:24223769-24224048:+|nuORF	ENST00000473357.1_1_22:24223769-24224048:+|nuORF	ENST00000473357.1_1_22:24223769-24224048:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.2762451171875	2	597.291217	1192.56788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.161	1	24.161	23.661	24.661	0								0	0	0	0.36961	1	3666	3666		5.7604	3.0252	1				8920	10906	4897	4897	11760	11760					-0.02070059928792034
FHQESELEVH	10	Unmodified	_FHQESELEVH_					0	0	0		nc|ENSG00000118557|Q8TBY8-3|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-4|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.5596618652344	3	418.863165	1253.56767	-0.051618	-2.1621E-05	0.881	0.00036902	0.82938	0.0003474	419.1978920828024	24.53	0.088982	24.491	24.448	24.537	-0.038927					4	2	2	0	0	0	0.32122	1	3787	3787		2.086	0	1	32828			8921	2834	4898	4898	11761	11761					-0.048975692299336515
FHQGRLQAR	9	Unmodified	_FHQGRLQAR_					0	0	0			REV__ENST00000476870.5_1_7:100468185-100470922:+|nuORF	REV__ENST00000476870.5_1_7:100468185-100470922:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2696533203125	2	556.807231	1111.59991	0.3881	0.0002161	-1.2563	-0.00069951	-0.86819	-0.00048341	556.8063750209773	37.925	0.62658	38.016	37.667	38.294	0.090881					40	22	3	0	0	0	0.25938	1	7890	7890		4.3292	0	1	246810	+		8922	13985	4899	4899	11762	11762					0.048573077543551335
FHSKLLSR	8	Unmodified	_FHSKLLSR_					0	0	0			REV__ENST00000420455.5_1_21:34823077-34823134:-|nuORF	REV__ENST00000420455.5_1_21:34823077-34823134:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2483215332031	2	494.290351	986.566149	0.039396	1.9473E-05	-0.48695	-0.00024069	-0.44755	-0.00022122	494.2900393927057	34.254	0.44769	34.32	34.066	34.513	0.066357					25	15	2	0	0	0	0.33661	1	6776	6776		19.257	2.1441	1	126280	+		8923	20853	4900	4900	11763	11763					0.07232886262613647
FHTAEQDRPF	10	Unmodified	_FHTAEQDRPF_					0	0	0			REV__ENST00000496704.1_1_2:130897130-130898075:-|nuORF	REV__ENST00000496704.1_1_2:130897130-130898075:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.5319519042969	3	416.531638	1246.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.575	1	41.575	41.075	42.075	0								0	0	0	0.37048	1	8972	8972		6.1918	0.40842	1		+		8924	16564	4901	4901	11764	11764					-0.04033845647495582
FHTSIEQEK	9	Unmodified	_FHTSIEQEK_					0	0	0		nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400	nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.7764892578125	2	559.77747	1117.54039	0.53304	0.00029838	2.1979	0.0012303	2.7309	0.0015287	559.7797566210573	44.472	0.83221	44.54	44.174	45.006	0.068573					71	26	4	0	0	0	0.22188	1	9816	9816		20.454	5.6154	1	2301200			8925	7371	4902	4902	11765	11765					-0.013680527703400003
FHTSIEQEK	9	Unmodified	_FHTSIEQEK_					0	0	0		nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400	nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.7761840820312	2	559.77747	1117.54039	0.34875	0.00019522	2.1811	0.001221	2.5299	0.0014162	559.7799146732215	44.436	1.1366	44.511	44.148	45.284	0.07505					102	31	6	0	0	0	0.25989	1	9778	9778		14.838	0.93222	1	2170700			8926	7371	4902	4902	11766	11766					-0.013680527703400003
FHVPHCKQ	8	Unmodified	_FHVPHCKQ_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2482604980469	2	498.247629	994.480705	0.51258	0.00025539	1.8279	0.00091073	2.3404	0.0011661	498.24856974071747	20.8	0.65956	20.8	20.594	21.254	0					37	22	2	0	0	0	0.45942	1	2727	2727		2.5775	0.27475	1	51891	+		8927	17663	4903	4903	11767	11767					-0.01675602194700332
FIAFLYHFS	9	Unmodified	_FIAFLYHFS_					0	0	0			REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3662719726562	2	572.794935	1143.57532	0.60792	0.00034821	-0.33027	-0.00018918	0.27765	0.00015904	572.7946088710117	50.958	1.0223	50.967	50.484	51.506	0.0095673					80	38	3	0	0	0	0.25066	1	11966	11966		11.64	0	1	640280	+		8928	13805	4904	4904	11768	11768					0.00927234828282053
FIALVTPCQKM	11	Unmodified	_FIALVTPCQKM_					0	0	0		ENST00000512891.1_1_5:177593058-177593307:+|nuORF	ENST00000512891.1_1_5:177593058-177593307:+|nuORF	ENST00000512891.1_1_5:177593058-177593307:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.2820739746094	3	417.559372	1249.65629	-0.18371	-7.6708E-05	0.35911	0.00014995	0.1754	7.324E-05	417.89366722497925	23.72	0.54257	23.72	23.542	24.085	0					30	18	4	0	0	0	0.3331	1	3592	3592		1.0136	0	1	104420			8929	11400	4905	4905	11769	11769					0.04144431484496636
FICQRLMQGYQ	11	Unmodified	_FICQRLMQGYQ_					0	0	0		nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5	nc|ENSG00000100150|O75140-5|DEPDC5	nc|ENSG00000100150|O75140-5|DEPDC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.2815246582031	3	462.893414	1385.65841	0.087527	4.0516E-05	-1.1807	-0.00054652	-1.0931	-0.000506	462.8928291476401	73.874	0.39011	73.844	73.61	74	-0.030655					20	13	2	0	0	0	0.33287	1	18872	18872		2.8433	0.21205	1	235160			8930	12611	4906	4906	11770	11770					-0.018991397776972008
FIDKKLFLQ	9	Unmodified	_FIDKKLFLQ_					0	0	0			REV__ENSG00000053328|ENST00000338882|METTL24	REV__ENSG00000053328|ENST00000338882|METTL24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8431396484375	2	576.344792	1150.67503	0.3979	0.00022933	0.31817	0.00018338	0.71607	0.0004127	576.3453252078306	86.628	0.40739	86.712	86.576	86.984	0.084251					21	16	2	0	0	0	0.25526	1	22862	22862		7.9102	0	1	111910	+		8931	13576	4907	4907	11771	11771					0.1057205244223951
FIDQSEMLK	9	Unmodified	_FIDQSEMLK_					0	0	0			REV__ENST00000493544.1_1_2:242054361-242072488:-|nuORF	REV__ENST00000493544.1_1_2:242054361-242072488:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.796875	2	555.778625	1109.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.191	1	40.191	39.691	40.691	0								0	0	0	0.19534	1	8549	8549		24.021	1.2843	1		+		8932	14892	4908	4908	11772	11772					-0.007693403568737267
FIDRDGSTF	9	Unmodified	_FIDRDGSTF_					0	0	0		ENSG00000168676|ENST00000304372|KCTD19;KCTD19|p.S126Lfs*5|1|0.04|ENSG00000168676|chr16:67304496-67304497|-/GCAGAGAG|frameshift_variant;ENST00000570049.5_1_16:67335149-67360610:-|nuORF;ENST00000566392.5_1_16:67336668-67360655:-|nuORF	ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.813720703125	2	529.251089	1056.48762	0.66468	0.00035178	-1.1586	-0.0006132	-0.49394	-0.00026142	529.2504733237644	76.458	0.89178	76.426	76.263	77.154	-0.031487					43	32	2	0	0	0	0.24913	1	19882	19882		7.9102	0	1	169250			8933	6292	4909	4909	11773	11773					-0.03836010833151704
FIERPEDETL	10	Unmodified	_FIERPEDETL_					0	0	0		ENSG00000174032|ENST00000519676|SLC25A30;nc|ENSG00000174032|Q5SVS4-2|SLC25A30	ENSG00000174032|ENST00000519676|SLC25A30	ENSG00000174032|ENST00000519676|SLC25A30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.8096313476562	2	624.808968	1247.60338	0.41586	0.00025983	0.04681	2.9248E-05	0.46267	0.00028908	624.8093404725557	68.614	1.1965	68.614	68.202	69.398	0					125	40	5	0	0	0	0.24437	2	17258	17258;17302		27.223	1.8239	1	2435100			8934	6769	4910	4910	11774;11775	11774					-0.010515317729414164
FIESWEML	8	Unmodified	_FIESWEML_					0	0	0			REV__ENST00000559198.1_1_15:49303877-49305024:-|nuORF	REV__ENST00000559198.1_1_15:49303877-49305024:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7947998046875	2	527.749336	1053.48412	0.54364	0.0002869	0.83999	0.0004433	1.3836	0.00073021	527.7495524724367	86.07	0.57358	86.155	85.888	86.461	0.084251					28	21	2	0	0	0	0.31375	1	22596	22596		26.341	1.6674	1	149660	+		8935	22288	4911	4911	11776	11776					-0.04048396931352727
FIETYLPF	8	Unmodified	_FIETYLPF_					0	0	0			REV__ENST00000328965.8_2_11:120099983-120100535:+|nuORF	REV__ENST00000328965.8_2_11:120099983-120100535:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.255126953125	2	515.268219	1028.52188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.41	1	65.41	64.91	65.91	0								0	0	0	0.35779	1	16315	16315		11.114	0	1		+		8936	20023	4912	4912	11777	11777					0.008764373257463376
FIFDLPAHQK	10	Unmodified	_FIFDLPAHQK_					0	0	0		ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF	ENSG00000154451|ENST00000370459|GBP5	ENSG00000154451|ENST00000370459|GBP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.88885498046875	3	405.888874	1214.64479	-0.1942	-7.8822E-05	-0.094515	-3.8363E-05	-0.28871	-0.00011718	405.8887865747341	51.765	0.59138	51.775	51.612	52.204	0.0095634					37	21	2	0	0	0	0.28078	1	12098	12098		22.775	7.8178	1	538180			8937	5130	4913	4913	11778	11778					0.046056937770117656
FIFDLPAHQK	10	Unmodified	_FIFDLPAHQK_					0	0	0		ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF	ENSG00000154451|ENST00000370459|GBP5	ENSG00000154451|ENST00000370459|GBP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.7984619140625	2	608.329673	1214.64479	0.17359	0.0001056	0.020748	1.2622E-05	0.19434	0.00011822	608.3297675831612	51.777	0.32562	51.786	51.666	51.992	0.0095634					17	11	2	0	0	0	0.31256	1	12078	12078		20.415	7.883	1	189560			8938	5130	4913	4913	11779	11779					0.046056937770117656
FIFDLPAHQK	10	Unmodified	_FIFDLPAHQK_					0	0	0		ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF	ENSG00000154451|ENST00000370459|GBP5	ENSG00000154451|ENST00000370459|GBP5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	405.888874	1214.64479	-0.0679	-2.756E-05	-0.092525	-3.7555E-05	-0.16042	-6.5115E-05	405.8887574617448	51.69	0.66851	51.69	51.354	52.023	0	-0.030124	7.7962E-05	NaN	22.775	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443050			8939	5130	4913	4913							0.046056937770117656
FIFEAKQVE	9	Unmodified	_FIFEAKQVE_					0	0	0			REV__ENST00000549185.5_3_14:31803609-31872202:-|nuORF	REV__ENST00000549185.5_3_14:31803609-31872202:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.796630859375	2	555.795132	1109.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.09	1	116.11	115.61	116.61	0.020988								0	0	0	0.264	1	30130	30130		1.8442	0.19162	1		+		8940	15417	4914	4914	11780	11780					0.0253060975749122
FIFGFAVT	8	Unmodified	_FIFGFAVT_					0	0	0			REV__ENSG00000136048|ENST00000258534|DRAM1	REV__ENSG00000136048|ENST00000258534|DRAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.77642822265625	2	451.244547	900.47454	0.29175	0.00013165	-3.5085	-0.0015832	-3.2168	-0.0014515	451.24267758606857	63.45	0.55449	63.441	63.104	63.659	-0.0085526					37	19	3	0	0	0	0.29134	1	15604	15604		26.341	1.6674	1	178320	+		8941	15784	4915	4915	11781	11781					0.020322028454188512
FIFIAVKKKLK	11	Unmodified	_FIFIAVKKKLK_					0	0	0		ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.6358642578125	3	445.635598	1333.88496	0.39246	0.00017489	-0.14833	-6.6102E-05	0.24413	0.00010879	445.6356193784322	33.487	1.2457	33.487	33.31	34.556	0					209	44	5	0	0	0	0.48486	1	6722	6722		0.094841	0.094841	1	11149000			8942	11577	4916	4916	11782	11782					0.23137715115194624
FIFIAVKKKLK	11	Unmodified	_FIFIAVKKKLK_					0	0	0		ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.6358337402344	3	445.635598	1333.88496	0.39976	0.00017815	-0.010077	-4.4905E-06	0.38968	0.00017366	445.6356351473047	33.235	1.3314	33.291	33.171	34.502	0.055309					225	47	5	0	0	0	0.48486	2	6637	6637;6680		0.094841	0.094841	1	9976100			8943	11577	4916	4916	11783;11784	11783					0.23137715115194624
FIFSLTEGF	9	Unmodified	_FIFSLTEGF_					0	0	0			REV__nc|ENSG00000184908|P51801-2|CLCNKB	REV__nc|ENSG00000184908|P51801-2|CLCNKB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7621459960938	2	530.771126	1059.5277	0.60267	0.00031988	0.35395	0.00018787	0.95662	0.00050775	530.7712194733764	89.23	0.63783	89.23	89.007	89.645	0					43	33	2	0	0	0	0.24581	1	23676	23676		16.942	1.0951	1	256870	+		8944	18338	4917	4917	11785	11785					0.00031535837410956447
FIFTQQSL	8	Unmodified	_FIFTQQSL_					0	0	0			REV__nc|ENSG00000106003|Q8NES3-4|LFNG	REV__nc|ENSG00000106003|Q8NES3-4|LFNG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.80242919921875	2	492.263468	982.512382	0.47681	0.00023472	-0.75721	-0.00037275	-0.28041	-0.00013803	492.26284824282146	82.426	0.55118	82.426	82.262	82.813	0					38	20	3	0	0	0	0.32435	1	21588	21588		16.942	16.942	1	179610	+		8945	22929	4918	4918	11786	11786					0.02042669040235978
FIGFPSLLRNF	11	Unmodified	_FIGFPSLLRNF_					0	0	0		ENST00000418593.6_1_6:133065341-133065398:-|nuORF	ENST00000418593.6_1_6:133065341-133065398:-|nuORF	ENST00000418593.6_1_6:133065341-133065398:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.56396484375	3	437.580041	1309.71829	0.15681	6.8616E-05	-0.89414	-0.00039126	-0.73733	-0.00032264	437.5795264688111	47.508	0.82701	47.556	47.009	47.836	0.047523					53	30	2	0	0	0	0.33025	1	10785	10785		9.2438	8.0289	1	730290			8946	10347	4919	4919	11787	11787					0.07582242219496038
FIGNKPLLK	9	Unmodified	_FIGNKPLLK_					0	0	0			REV__ENSG00000197863|ENST00000356725|ZNF790	REV__ENSG00000197863|ENST00000356725|ZNF790	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7727661132812	2	515.326402	1028.63825	-0.010264	-5.2895E-06	-4.4626	-0.0022997	-4.4728	-0.002305	515.3237628831797	13.315	0.22708	13.315	13.2	13.427	0					10	7	2	0	0	0	0.26168	1	375	375		1.8442	0.36234	1	34459	+		8947	18773	4920	4920	11788	11788					0.1250780061632213
FIGNRREL	8	Unmodified	_FIGNRREL_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.758056640625	2	502.785433	1003.55631	0.56799	0.00028558	1.1395	0.0005729	1.7074	0.00085848	502.7865435502477	84.725	1.1447	84.725	84.137	85.282	0					85	43	3	0	0	0	0.31934	1	22238	22238		24.674	7.7316	1	391800			8948	1692	4921	4921	11789	11789					0.05467698257234588
FIHAYFII	8	Unmodified	_FIHAYFII_					0	0	0			REV__ENST00000450728.1_1_2:200334820-200335477:+|nuORF	REV__ENST00000450728.1_1_2:200334820-200335477:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2974853515625	2	512.286746	1022.55894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.19	1	64.19	63.69	64.69	0								0	0	0	0.32888	1	15942	15942		24.21	3.3387	1		+		8949	21114	4922	4922	11790	11790					0.0485615366218326
FIHGYIEK	8	Unmodified	_FIHGYIEK_					0	0	0		ENST00000299353.6_1_10:104622682-104660454:+|nuORF;ENSG00000214435|ENST00000369880|AS3MT	ENST00000299353.6_1_10:104622682-104660454:+|nuORF	ENST00000299353.6_1_10:104622682-104660454:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.292724609375	2	503.77146	1005.52837	0.45091	0.00022715	-0.021809	-1.0987E-05	0.4291	0.00021617	503.7715759948657	56.695	0.76791	56.695	56.398	57.165	0					44	28	2	0	0	0	0.31617	1	13747	13747		20.454	2.3186	1	343020			8950	8385	4923	4923	11791	11791					0.025823752771316322
FIHMHRHPN	9	Unmodified	_FIHMHRHPN_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;REV3L|p.N1558Kfs*2|1|0.35|ENSG00000009413|chr6:111373681-111373682|-/T|frameshift_variant	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.7808227539062	2	594.795809	1187.57707	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.035	1	27.035	26.535	27.535	0								0	0	0	0.25499	1	4534	4534		4.756	1.8668	1				8951	407	4924	4924	11792	11792					-0.009220346347319719
FIHRHVKKGGA	11	Unmodified	_FIHRHVKKGGA_					0	0	0			REV__ENST00000497184.5_1_7:44089925-44090420:+|nuORF	REV__ENST00000497184.5_1_7:44089925-44090420:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.3673706054688	2	625.367456	1248.72036	-0.1554	-9.7181E-05	-1.0153	-0.00063492	-1.1707	-0.0007321	625.3668903338062	98.199	0.37744	98.261	98.06	98.438	0.061516					80	42	3	0	0	0	0.3333	1	26250	26250		0.30703	0	1	459080	+		8952	21680	4925	4925	11793	11793					0.1059471574797044
FIHVFGVLFV	10	Unmodified	_FIHVFGVLFV_					0	0	0			REV__ENST00000393295.7_1_3:128848618-128848771:-|nuORF	REV__ENST00000393295.7_1_3:128848618-128848771:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.34375	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.89	1	117.89	117.39	118.39	0								0	0	0	0.3808	1	30473	30473		1.8442	0.6509	1		+		8953	20603	4926	4926	11794	11794					0.08828373650385402
FIIIFFPLLF	10	Unmodified	_FIIIFFPLLF_					0	0	0			REV__ENSG00000214943|ENST00000399285|GPR33	REV__ENSG00000214943|ENST00000399285|GPR33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.59454345703125	3	423.926378	1268.7573	0.31997	0.00013564	-0.22169	-9.398E-05	0.098278	4.1662E-05	423.92618104104906	33.586	0.65918	33.652	33.38	34.04	0.06636					41	23	2	0	0	0	0.32122	1	6453	6453		0.77653	0	1	473950	+		8954	19069	4927	4927	11795	11795					0.1336757452118036
FIIMDPLCFV	10	Unmodified	_FIIMDPLCFV_					0	0	0		ENST00000452193.5_2_9:2157694-2157790:+|nuORF	ENST00000452193.5_2_9:2157694-2157790:+|nuORF	ENST00000452193.5_2_9:2157694-2157790:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.7457275390625	2	599.305964	1196.59737	0.46694	0.00027984	0.28632	0.0001716	0.75326	0.00045143	599.3060848123971	68.174	0.22775	68.174	68.048	68.275	0					18	8	3	0	0	0	0.31745	1	17140	17140		7.9102	0	1	133760			8955	10654	4928	4928	11796	11796					0.006939551901723462
FIIQLNWK	8	Unmodified	_FIIQLNWK_					0	0	0		ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1	ENSG00000142494|ENST00000270570|SLC47A1	ENSG00000142494|ENST00000270570|SLC47A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.8086547851562	2	531.310752	1060.60695	0.5897	0.00031331	-0.13753	-7.3074E-05	0.45216	0.00024024	531.3106976666562	19.839	0.25045	19.784	19.595	19.846	-0.055693					13	8	2	0	0	0	0.34408	1	2365	2365		2.3027	0.24298	1	38629			8956	4444	4929	4929	11797	11797					0.07907227582222731
FIIWKRLRFVA	11	Unmodified	_FIIWKRLRFVA_					0	0	0			REV__nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	REV__nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.6344909667969	3	483.63448	1447.88161	0.17436	8.4325E-05	0.20242	9.7896E-05	0.37678	0.00018222	483.6344917018323	92.067	0.46542	92.067	91.866	92.331	0					118	30	5	0	0	0	0.48495	1	24502	24502		0.08335	0.08335	1	2366200	+		8957	15567	4930	4930	11798	11798					0.17558465061188144
FIIWKRLRFVA	11	Unmodified	_FIIWKRLRFVA_					0	0	0			REV__nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	REV__nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.63458251953125	3	483.63448	1447.88161	0.41039	0.00019848	0.031462	1.5216E-05	0.44186	0.0002137	483.6344168036796	90.355	1.3826	90.355	89.823	91.205	0.00039673					329	106	5	0	0	0	0.48486	1	23856	23856		0.094841	0.094841	1	2061900	+		8958	15567	4930	4930	11799	11799					0.17558465061188144
FIKDFPQL	8	Unmodified	_FIKDFPQL_					0	0	0		ASTN2|p.G1095Wfs*12|1|0.13|ENSG00000148219|chr9:116618396-116618397|-/A|frameshift_variant;nc|ENSG00000148219|O75129-2|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2	ASTN2|p.G1095Wfs*12|1|0.13|ENSG00000148219|chr9:116618396-116618397|-/A|frameshift_variant	ASTN2|p.G1095Wfs*12|1|0.13|ENSG00000148219|chr9:116618396-116618397|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.3100891113281	2	504.28166	1006.54877	0.19152	9.6582E-05	-0.18084	-9.1192E-05	0.010688	5.3896E-06	504.2814400844486	66.74	0.85657	66.726	66.327	67.184	-0.013596					45	30	2	0	0	0	0.34046	1	16606	16606		14.582	1.0738	1	324030			8959	59	4931	4931	11800	11800					0.04575545936938852
FIKDFPQL	8	Unmodified	_FIKDFPQL_					0	0	0		ASTN2|p.G1095Wfs*12|1|0.13|ENSG00000148219|chr9:116618396-116618397|-/A|frameshift_variant;nc|ENSG00000148219|O75129-2|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2	ASTN2|p.G1095Wfs*12|1|0.13|ENSG00000148219|chr9:116618396-116618397|-/A|frameshift_variant	ASTN2|p.G1095Wfs*12|1|0.13|ENSG00000148219|chr9:116618396-116618397|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.3100891113281	2	504.28166	1006.54877	0.35054	0.00017677	-1.6945	-0.00085451	-1.344	-0.00067774	504.27985602076694	66.234	0.42047	66.22	66.091	66.511	-0.013596					19	15	2	0	0	0	0.34046	1	16606	16606		14.582	1.0738	1	90106			8960	59	4931	4931	11801	11801					0.04575545936938852
FIKEEQVF	8	Unmodified	_FIKEEQVF_					0	0	0			REV__ENSG00000130560|ENST00000371756|UBAC1	REV__ENSG00000130560|ENST00000371756|UBAC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.265869140625	2	520.276575	1038.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.213	1	74.183	73.683	74.683	-0.030655								0	0	0	0.35251	1	18993	18993		13.508	0	1		+		8961	15464	4932	4932	11802	11802					0.020869382117098212
FIKFCILQ	8	Unmodified	_FIKFCILQ_					0	0	0			REV__ENST00000476324.1_1_7:150437634-150437727:+|nuORF	REV__ENST00000476324.1_1_7:150437634-150437727:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7975769042969	2	506.288431	1010.56231	0.42501	0.00021518	1.5758	0.00079782	2.0008	0.001013	506.2893370620667	72.651	0.26681	72.651	72.56	72.827	0					17	9	2	0	0	0	0.34046	1	18526	18526		14.582	6.6715	1	72049	+		8962	21420	4933	4933	11803	11803					0.05745080444535233
FIKFVIFPP	9	Unmodified	_FIKFVIFPP_					0	0	0			REV__ENSG00000165182|ENST00000379211|CXorf58	REV__ENSG00000165182|ENST00000379211|CXorf58	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3321533203125	2	554.333696	1106.65284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.15	1	114.13	113.63	114.63	-0.019096								0	0	0	0.26334	1	29655	29655		2.0598	0.40713	1		+		8963	17213	4934	4934	11804	11804					0.10377872764479434
FIKGLIPSY	9	Unmodified	_FIKGLIPSY_					0	0	0			REV__ENST00000526582.1_1_11:90848103-90848802:-|nuORF	REV__ENST00000526582.1_1_11:90848103-90848802:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.296875	2	519.305136	1036.59572	0.4186	0.00021738	0.1456	7.5611E-05	0.5642	0.00029299	519.3050920909752	67.954	0.6489	68.032	67.715	68.363	0.078041					52	22	3	0	0	0	0.1669	1	17069	17069		28.487	1.6032	1	719820	+		8964	21964	4935	4935	11805	11805					0.07888405488097305
FIKHIDLL	8	Unmodified	_FIKHIDLL_					0	0	0			REV__ENST00000437111.1_1_10:52389508-52390123:-|nuORF	REV__ENST00000437111.1_1_10:52389508-52390123:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2929992675781	2	499.805303	997.596052	0.16613	8.3031E-05	1.4292	0.00071434	1.5954	0.00079737	500.3066026288697	17.674	0.24837	17.557	17.414	17.663	-0.11739					11	8	2	0	0	0	0.34367	1	1693	1693		4.3292	1.44	1	21058	+		8965	16257	4936	4936	11806	11806					0.09715825207945272
FIKKIHIFYRK	11	Unmodified	_FIKKIHIFYRK_					0	0	0			REV__ENSG00000198169|ENST00000292562|ZNF251	REV__ENSG00000198169|ENST00000292562|ZNF251	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.30999755859375	3	498.309885	1491.90782	0.32327	0.00016109	0.018392	9.1647E-06	0.34166	0.00017025	498.30981495752957	92.401	0.32249	92.401	92.331	92.654	0					70	25	3	0	0	0	0.48212	1	24582	24582		0.45452	0	1	436830	+		8966	18804	4937	4937	11807	11807					0.1815473423266667
FIKNTVTF	8	Unmodified	_FIKNTVTF_					0	0	0		nc|ENSG00000099957|O15547-2|P2RX6;ENSG00000099957|ENST00000413302|P2RX6	nc|ENSG00000099957|O15547-2|P2RX6	nc|ENSG00000099957|O15547-2|P2RX6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80010986328125	2	485.273835	968.533118	0.51375	0.00024931	-1.4003	-0.00067952	-0.88654	-0.00043021	485.272998184039	53.111	0.28672	53.167	53.013	53.3	0.056255					10	9	2	0	0	0	0.34039	1	12551	12551		15.847	3.3156	1	105130			8967	1508	4938	4938	11808	11808					0.04759259419904538
FIKNTVTF	8	Unmodified	_FIKNTVTF_					0	0	0		nc|ENSG00000099957|O15547-2|P2RX6;ENSG00000099957|ENST00000413302|P2RX6	nc|ENSG00000099957|O15547-2|P2RX6	nc|ENSG00000099957|O15547-2|P2RX6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	485.273835	968.533118	0.31911	0.00015486	-0.29782	-0.00014453	0.021287	1.033E-05	485.27328398158267	53.128	0.16634	53.128	53.062	53.228	0	-0.019259	0.00054202	NaN	15.847	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109680			8968	1508	4938	4938							0.04759259419904538
FILGQTPASV	10	Unmodified	_FILGQTPASV_					0	0	0		ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.790771484375	2	516.78985	1031.56515	0.78124	0.00040374	0.72036	0.00037228	1.5016	0.00077601	516.7900495041777	60.692	0.4373	60.692	60.413	60.851	0					25	15	2	0	0	0	0.32673	1	14877	14877		16.942	3.0362	1	458090			8969	8115	4939	4939	11809	11809					0.05062627103052364
FILLTPPH	8	Unmodified	_FILLTPPH_					0	0	0		nc|ENSG00000166928|Q96JA4-4|MS4A14	nc|ENSG00000166928|Q96JA4-4|MS4A14	nc|ENSG00000166928|Q96JA4-4|MS4A14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2431640625	2	469.278921	936.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.91	1	103.91	103.41	104.41	0								0	0	0	0.37664	1	27594	27594		2.5775	0	1				8970	12822	4940	4940	11810	11810					0.07247867145133569
FIMQKHWI	8	Unmodified	_FIMQKHWI_					0	0	0			REV__ENST00000522927.5_1_8:125520923-125531109:-|nuORF	REV__ENST00000522927.5_1_8:125520923-125531109:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8529663085938	2	551.796955	1101.57936	0.35004	0.00019315	1.1498	0.00063447	1.4999	0.00082762	552.2985532076908	51.752	0.53187	51.752	51.619	52.151	0					39	19	3	0	0	0	0.33245	1	12075	12075		19.439	0.18201	1	324230	+		8971	21922	4941	4941	11811	11811					0.032630010503226003
FINDTSSAKF	10	Unmodified	_FINDTSSAKF_					0	0	0		ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENST00000529787.2_1_9:100092438-100109914:+|nuORF;ENST00000494917.6_1_9:100069637-100105846:+|nuORF;ENST00000460482.6_1_9:100070037-100107975:+|nuORF;ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	ENST00000375206.6_1_9:100053158-100139173:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8114013671875	2	565.279846	1128.54514	-0.079473	-4.4925E-05	-0.29879	-0.0001689	-0.37827	-0.00021383	565.7790625315989	38.694	0.1424	38.694	38.623	38.765	0					6	4	2	0	0	0	0.31482	1	8072	8072		11.64	0	1	65284			8972	9910	4942	4942	11812	11812					-0.013991686275630855
FINFTVQPHI	10	Unmodified	_FINFTVQPHI_					0	0	0			REV__nc|ENSG00000293412|O75343|GUCY1B2	REV__nc|ENSG00000293412|O75343|GUCY1B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.2314453125	3	405.888874	1214.64479	-0.0679	-2.756E-05	-0.092525	-3.7555E-05	-0.16042	-6.5115E-05	405.8887574617448	51.69	0.66851	51.69	51.354	52.023	0					51	24	3	0	0	0	0.33753	1	12178	12178		14.957	1.3423	1	443050	+		8973	23261	4943	4943	11813	11813					0.04605693777034503
FINFTVQPHI	10	Unmodified	_FINFTVQPHI_					0	0	0			REV__nc|ENSG00000293412|O75343|GUCY1B2	REV__nc|ENSG00000293412|O75343|GUCY1B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2315673828125	3	405.888874	1214.64479	-0.076199	-3.0928E-05	-0.27087	-0.00010994	-0.34707	-0.00014087	405.8887601744931	51.65	0.66039	51.696	51.479	52.14	0.046574					37	23	2	0	0	0	0.30504	1	12173	12173		21.59	3.2171	1	423130	+		8974	23261	4943	4943	11814	11814					0.04605693777034503
FINLLDYFQ	9	Unmodified	_FINLLDYFQ_					0	0	0			REV__ENST00000487483.6_1_19:46886892-46890886:+|nuORF	REV__ENST00000487483.6_1_19:46886892-46890886:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8338623046875	2	586.802957	1171.59136	0.37987	0.00022291	2.443	0.0014336	2.8229	0.0016565	586.8050857986974	79.682	0.18565	79.682	79.612	79.797	0					11	6	2	0	0	0	0.24993	1	20661	20661		13.042	1.4022	1	83933	+		8975	13434	4944	4944	11815	11815					0.012428962745161698
FINTIPPIK	9	Unmodified	_FINTIPPIK_					0	0	0			REV__nc|ENSG00000117114|O95490-3|ADGRL2	REV__nc|ENSG00000117114|O95490-3|ADGRL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8082885742188	2	521.81841	1041.62227	0.40119	0.00020935	-0.65734	-0.00034301	-0.25615	-0.00013366	521.8178218095725	61.988	2.0863	61.988	61.254	63.34	0					226	77	5	0	0	0	0.18803	1	15474	15474		25.399	1.3787	1	1682200	+		8976	14954	4945	4945	11816	11816					0.1031209437940106
FIPRLWRKRCR	11	Unmodified	_FIPRLWRKRCR_					0	0	0			REV__ENST00000432193.5_1_7:86970965-86974694:-|nuORF	REV__ENST00000432193.5_1_7:86970965-86974694:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2926940917969	3	510.969868	1529.88777	0.38862	0.00019857	0.54941	0.00028073	0.93804	0.00047931	510.9701185481841	21.317	0.7637	21.317	21	21.763	0					60	26	4	0	0	0	0.33351	1	2725	2725		0.094841	0	1	176070	+		8977	20248	4946	4946	11817	11817					0.14402660021073643
FIPRLWRKRCR	11	Unmodified	_FIPRLWRKRCR_					0	0	0			REV__ENST00000432193.5_1_7:86970965-86974694:-|nuORF	REV__ENST00000432193.5_1_7:86970965-86974694:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2923278808594	3	510.969868	1529.88777	0.4114	0.00021022	0.75803	0.00038733	1.1694	0.00059754	510.97024866780447	21.476	0.49729	21.376	21.16	21.657	-0.10034					49	17	4	0	0	0	0.33351	1	2818	2818		0.094841	0	1	212110	+		8978	20248	4946	4946	11818	11818					0.14402660021073643
FIPTLHTNYR	10	Unmodified	_FIPTLHTNYR_					0	0	0			REV__ENST00000515834.1_1_5:180657548-180660003:+|nuORF	REV__ENST00000515834.1_1_5:180657548-180660003:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.8965148925781	3	421.227779	1260.66151	-0.29855	-0.00012576	-3.7356	-0.0015735	-4.0342	-0.0016993	421.5610181710634	39.837	0.13512	39.837	39.751	39.886	0					6	4	2	0	0	0	0.31876	1	8445	8445		4.1895	2.4472	1	65577	+		8979	21849	4947	4947	11819	11819					0.04160194662972572
FIQDSMLDF	9	Unmodified	_FIQDSMLDF_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3560180664062	2	558.257525	1114.5005	0.39933	0.00022293	-2.306	-0.0012873	-1.9066	-0.0010644	558.2559708833478	51.211	0.28643	51.258	51.142	51.429	0.046574					16	10	2	0	0	0	0.25417	1	11960	11960		8.5933	6.749	1	185160			8980	3869	4948	4948	11820	11820					-0.05217315765275998
FIQRHHFY	8	Unmodified	_FIQRHHFY_					0	0	0			REV__nc|ENSG00000115540|Q9Y3A3-2|MOB4	REV__nc|ENSG00000115540|Q9Y3A3-2|MOB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.8085327148438	2	574.293425	1146.5723	0.22355	0.00012839	-1.262	-0.00072475	-1.0384	-0.00059636	574.2925777652475	37.695	0.64696	37.793	37.529	38.176	0.097527					29	23	2	0	0	0	0.34319	1	7722	7722		5.7604	0	1	299930	+		8981	14883	4949	4949	11821	11821					0.0048740449412889575
FIRDKFLL	8	Unmodified	_FIRDKFLL_					0	0	0			REV__ENSG00000137674|ENST00000260228|MMP20	REV__ENSG00000137674|ENST00000260228|MMP20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.31591796875	2	526.318577	1050.6226	0.37442	0.00019706	-3.1447	-0.0016551	-2.7703	-0.0014581	526.3169174677877	76.083	0.62133	76.137	75.594	76.216	0.053413					66	20	4	0	0	0	0.22	1	19542	19542		39.957	0.0076237	1	1617400	+		8982	15876	4950	4950	11822	11822					0.09931514099275773
FIRYHKVQR	9	Unmodified	_FIRYHKVQR_					0	0	0			REV__nc|ENSG00000155926|Q13239-2|SLA	REV__nc|ENSG00000155926|Q13239-2|SLA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.9017333984375	3	416.243763	1245.70946	-0.046242	-1.9248E-05	-0.10617	-4.4191E-05	-0.15241	-6.3439E-05	416.24376474117366	28.836	0.51312	28.836	28.522	29.035	0					19	17	2	0	0	0	0.2524	1	5077	5077		11.495	4.0176	1	40526	+		8983	16720	4951	4951	11823	11823					0.0964331337368094
FISDNEQQI	9	Unmodified	_FISDNEQQI_					0	0	0			REV__ENSG00000177485|ENST00000557385|ZBTB33	REV__ENSG00000177485|ENST00000557385|ZBTB33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8368530273438	2	547.261653	1092.50875	0.61306	0.00033551	-0.91828	-0.00050254	-0.30522	-0.00016704	547.7617604953333	72.101	0.16196	72.074	72.009	72.171	-0.027275					7	5	2	0	0	0	0.23783	1	18346	18346		18.135	4.6271	1	59773	+		8984	17994	4952	4952	11824	11824					-0.03380045524295383
FISHIMEHR	9	Unmodified	_FISHIMEHR_					0	0	0		ENST00000581477.1_1_17:61887859-61888617:+|nuORF	ENST00000581477.1_1_17:61887859-61888617:+|nuORF	ENST00000581477.1_1_17:61887859-61888617:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135986328125	2	585.29785	1168.58115	0.20203	0.00011825	1.0601	0.0006205	1.2622	0.00073874	585.2989928530284	93.766	0.87701	93.852	93.525	94.402	0.086678					143	68	3	0	0	0	0.29176	1	25083	25083		10.074	0	1	241860			8985	12084	4953	4953	11825	11825					0.0036001006828882964
FISLASLEYSF	11	Unmodified	_FISLASLEYSF_					0	0	0		ENST00000543940.1_1_12:124114818-124118191:-|nuORF	ENST00000543940.1_1_12:124114818-124118191:-|nuORF	ENST00000543940.1_1_12:124114818-124118191:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.8275146484375	2	638.826629	1275.63871	0.23905	0.00015271	0.73172	0.00046744	0.97077	0.00062016	638.8271802188636	26.492	0.68039	26.492	26.161	26.841	0					53	23	3	0	0	0	0.47545	1	4329	4329		0.30703	0.30703	1	247360			8986	11747	4954	4954	11826	11826					0.011911307548416517
FISWHPVH	8	Unmodified	_FISWHPVH_					0	0	0		ENST00000566052.1_1_16:1652334-1657279:-|nuORF;ENST00000439987.6_1_16:1604037-1657279:-|nuORF;ENSG00000187535|ENST00000426508|IFT140	ENST00000566052.1_1_16:1652334-1657279:-|nuORF	ENST00000566052.1_1_16:1652334-1657279:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.76385498046875	2	511.763969	1021.51339	-0.035632	-1.8235E-05	1.0092	0.00051649	0.9736	0.00049825	511.7641676954273	12.158	0.21663	12.158	12.087	12.303	0					27	9	4	0	0	0	0.46461	1	40	40		0.79363	0	1	60893			8987	7687	4955	4955	11827	11827					0.003489281997985927
FISWHPVH	8	Unmodified	_FISWHPVH_					0	0	0		ENST00000566052.1_1_16:1652334-1657279:-|nuORF;ENST00000439987.6_1_16:1604037-1657279:-|nuORF;ENSG00000187535|ENST00000426508|IFT140	ENST00000566052.1_1_16:1652334-1657279:-|nuORF	ENST00000566052.1_1_16:1652334-1657279:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.7633361816406	2	511.763969	1021.51339	-0.20543	-0.00010513	0.64868	0.00033197	0.44325	0.00022684	511.764148228918	12.161	0.24868	12.093	12.032	12.281	-0.06806					22	10	3	0	0	0	0.46461	1	41	41		0.79363	0	1	60510			8988	7687	4955	4955	11828	11828					0.003489281997985927
FITEGGKNP	9	Unmodified	_FITEGGKNP_					0	0	0		nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G	nc|ENSG00000139144|O75747-2|PIK3C2G	nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.2722473144531	2	481.750724	961.486896	0.030792	1.4834E-05	-1.8342	-0.00088363	-1.8034	-0.00086879	481.75078280529306	30.542	0.25578	30.569	30.448	30.704	0.027157					10	8	2	0	0	0	0.25526	1	5581	5581		4.3292	0	1	47679			8989	4209	4956	4956	11829	11829					0.004611945178112364
FITEKKQN	8	Unmodified	_FITEKKQN_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.80047607421875	2	504.279649	1006.54475	0.12158	6.1312E-05	0.50709	0.00025571	0.62867	0.00031703	504.27978661455677	52.171	0.45621	52.17	51.902	52.358	-0.00081253					31	16	2	0	0	0	0.32886	1	12162	12162		10.824	0	1	635810			8990	6835	4957	4957	11830	11830					0.04173456443231771
FIVGIAEEF	9	Unmodified	_FIVGIAEEF_					0	0	0			REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7893676757812	2	512.771126	1023.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.231	1	92.231	91.731	92.731	0								0	0	0	0.22457	1	24523	24523		14.582	0.67564	1		+		8991	14807	4958	4958	11831	11831					0.016875358374250027
FIVGIAEEF	9	Unmodified	_FIVGIAEEF_					0	0	0			REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.789306640625	2	512.771126	1023.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.218	1	92.219	91.719	92.719	0.00046539								0	0	0	0.20953	1	24513	24513		19.439	2.3524	1		+		8992	14807	4958	4958	11832	11832					0.016875358374250027
FIVGVMEHYK	10	Unmodified	_FIVGVMEHYK_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.82861328125	2	611.818084	1221.62162	0.69065	0.00042255	-2.6266	-0.001607	-1.936	-0.0011845	611.815979445463	48.093	0.63252	48.14	47.968	48.601	0.047523					38	23	3	0	0	0	0.27059	1	11089	11089		24.021	0.23079	1	454880	+		8993	16655	4959	4959	11833	11833					0.019669316680392512
FIVPDSFLVAL	11	Unmodified	_FIVPDSFLVAL_					0	0	0		ENSG00000171621|ENST00000328089|SPSB1	ENSG00000171621|ENST00000328089|SPSB1	ENSG00000171621|ENST00000328089|SPSB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5694274902344	3	407.56903	1219.68526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.166	1	16.166	15.666	16.666	0								0	0	0	0.37382	1	1245	1245		1.2148	0	1				8994	6565	4960	4960	11834	11834					0.08420615376803653
FIWFLNSVFDL	11	Unmodified	_FIWFLNSVFDL_					0	0	0			REV__nc|ENSG00000291085|Q9H0A3|TMEM191A	REV__nc|ENSG00000291085|Q9H0A3|TMEM191A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7698974609375	3	467.579818	1399.71762	-0.32169	-0.00015041	0.038362	1.7937E-05	-0.28332	-0.00013248	467.5798373571263	12.971	0.18455	12.971	12.874	13.058	0					12	6	2	0	0	0	0.33334	1	304	304		1.2148	0.588	1	36659	+		8995	23256	4961	4961	11835	11835					0.03375402779806791
FIWSSYLSIYR	11	Unmodified	_FIWSSYLSIYR_					0	0	0			REV__ENST00000562237.5_1_16:69200987-69202772:+|nuORF	REV__ENST00000562237.5_1_16:69200987-69202772:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.3059997558594	3	478.918722	1433.73434	-0.17226	-8.2498E-05	2.5885	0.0012397	2.4163	0.0011572	479.25435212631135	12.837	0.30346	12.837	12.699	13.003	0					23	10	3	0	0	0	0.33326	1	254	254		1.4551	0.44154	1	57226	+		8996	22316	4962	4962	11836	11836					0.034819036657609104
FIWVFATQNP	10	Unmodified	_FIWVFATQNP_					0	0	0			REV__ENST00000582730.6_1_17:56081122-56081260:-|nuORF	REV__ENST00000582730.6_1_17:56081122-56081260:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.20654296875	3	408.213358	1221.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.798	1	25.798	25.298	26.298	0								0	0	0	0.35216	1	4159	4159		8.4443	2.6609	1		+		8997	22493	4963	4963	11837	11837					0.016300048857146976
FIYAWLHD	8	Unmodified	_FIYAWLHD_					0	0	0		ENSG00000119973|ENST00000239032|PRLHR	ENSG00000119973|ENST00000239032|PRLHR	ENSG00000119973|ENST00000239032|PRLHR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7984619140625	2	532.763635	1063.51272	0.66757	0.00035566	-1.3968	-0.00074414	-0.72919	-0.00038849	532.7627465419959	63.815	0.1354	63.805	63.745	63.881	-0.0095329					5	4	2	0	0	0	0.34185	1	15839	15839		10.183	2.2732	1	101150			8998	2922	4964	4964	11838	11838					-0.016499112399060323
FIYLALQK	8	Unmodified	_FIYLALQK_					0	0	0		ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.30987548828125	2	498.299853	994.585153	0.46979	0.00023409	0.075562	3.7652E-05	0.54535	0.00027175	498.3001281863765	93.584	0.43286	93.584	93.476	93.908	-0.00051117					58	32	2	0	0	0	0.45015	1	24954	24954		5.7604	0.52976	1	171560			8999	3345	4965	4965	11839	11839					0.08764422833644403
FIYQTWFK	8	Unmodified	_FIYQTWFK_					0	0	0		ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2933959960938	2	566.794935	1131.57532	0.085974	4.873E-05	0.07166	4.0616E-05	0.15763	8.9346E-05	566.7957776553953	14.507	0.69175	14.403	14.131	14.823	-0.10466					62	23	4	0	0	0	0.45942	1	712	712		2.5775	0	1	98697			9000	7139	4966	4966	11840	11840					0.014792348282981038
FIYSHQGLPSL	11	Unmodified	_FIYSHQGLPSL_					0	0	0		ENST00000392062.6_1_2:227731973-227771552:+|nuORF	ENST00000392062.6_1_2:227731973-227771552:+|nuORF	ENST00000392062.6_1_2:227731973-227771552:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.8963317871094	3	421.224034	1260.65027	0.26355	0.00011101	-0.10178	-4.2872E-05	0.16177	6.8143E-05	421.22409820954886	40.173	0.50624	40.266	40.051	40.557	0.09267					29	17	2	0	0	0	0.32719	1	8581	8581		14.218	10.029	1	139750			9001	10028	4967	4967	11841	11841					0.030373725688832565
FKAFNALNQTV	11	Unmodified	_FKAFNALNQTV_					0	0	0			REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.87542724609375	3	418.227667	1251.66117	0.12991	5.4333E-05	-0.50383	-0.00021071	-0.37391	-0.00015638	418.5610823571462	31.53	0.38335	31.571	31.365	31.748	0.040991					18	13	2	0	0	0	0.33085	1	5858	5858		8.2864	0	1	359600	+		9002	15829	4968	4968	11842	11842					0.04540774943097858
FKAHASFYYP	10	Unmodified	_FKAHASFYYP_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1;ENST00000518290.1_1_8:68111171-68111339:-|nuORF	ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8841247558594	3	410.869591	1229.58694	-0.10518	-4.3216E-05	4.3818	0.0018004	4.2766	0.0017571	410.87316529871237	15.675	0.6366	15.611	15.305	15.942	-0.064413					44	21	3	0	0	0	0.39745	1	1078	1078		1.9064	0	1	39972			9003	846	4969	4969	11843	11843					-0.018665681483980734
FKAKGLYRQK	10	Unmodified	_FKAKGLYRQK_					0	0	0			REV__nc|ENSG00000111674|P09104-2|ENO2	REV__nc|ENSG00000111674|P09104-2|ENO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8716430664062	2	619.87204	1237.72953	-0.42314	-0.00026229	-0.014682	-9.1009E-06	-0.43782	-0.00027139	619.8720341511403	35.224	0.45779	35.224	35.062	35.52	0					27	16	2	0	0	0	0.38515	1	7081	7081		6.2058	0.9089	1	234170	+		9004	22943	4970	4970	11844	11844					0.1201706431365892
FKAYQRIVLT	10	Unmodified	_FKAYQRIVLT_					0	0	0		ENST00000394534.6_2_7:91708762-91708813:+|nuORF	ENST00000394534.6_2_7:91708762-91708813:+|nuORF	ENST00000394534.6_2_7:91708762-91708813:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8687133789062	2	619.866423	1237.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.49	1	118.51	118.01	119.01	0.026253								0	0	0	0.38104	1	30681	30681		1.4819	0	1				9005	10072	4971	4971	11845	11845					0.10894242219501393
FKCCGNNGF	9	Unmodified	_FKCCGNNGF_					0	0	0		ENSG00000112619|ENST00000230381|PRPH2	ENSG00000112619|ENST00000230381|PRPH2	ENSG00000112619|ENST00000230381|PRPH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.29473876953125	2	495.20203	988.389507	0.6118	0.00030297	-0.19897	-9.8529E-05	0.41284	0.00020444	495.20190977942656	45.34	1.3669	45.34	44.493	45.86	0					83	49	2	0	0	0	0.25879	1	9915	9915		4.756	4.756	1	266660			9006	2445	4972	4972	11846	11846					-0.1051523395433378
FKCCGNNGF	9	Unmodified	_FKCCGNNGF_					0	0	0		ENSG00000112619|ENST00000230381|PRPH2	ENSG00000112619|ENST00000230381|PRPH2	ENSG00000112619|ENST00000230381|PRPH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.29461669921875	2	495.20203	988.389507	0.48455	0.00023995	-0.048426	-2.398E-05	0.43612	0.00021597	495.20194530033547	44.764	1.5406	44.839	44.04	45.58	0.075047					100	56	2	0	0	0	0.25879	1	9817	9817		4.756	4.756	1	302450			9007	2445	4972	4972	11847	11847					-0.1051523395433378
FKDMPNLEIN	10	Unmodified	_FKDMPNLEIN_					0	0	0			REV__ENSG00000154265|ENST00000392676|ABCA5	REV__ENSG00000154265|ENST00000392676|ABCA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.53790283203125	3	407.537513	1219.59071	-0.024109	-9.8252E-06	0.5973	0.00024342	0.57319	0.0002336	407.5377009044428	57.583	0.94322	57.583	57.299	58.243	0					70	33	4	0	0	0	0.35624	1	13943	13943		11.518	1.9739	1	1408000	+		9008	16656	4973	4973	11848	11848					-0.010302664368509795
FKDMPNLEIN	10	Unmodified	_FKDMPNLEIN_					0	0	0			REV__ENSG00000154265|ENST00000392676|ABCA5	REV__ENSG00000154265|ENST00000392676|ABCA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5377197265625	3	407.537513	1219.59071	0.014715	5.997E-06	0.61102	0.00024901	0.62573	0.00025501	407.53770376983164	57.404	0.70943	57.49	57.21	57.92	0.085617					60	25	3	0	0	0	0.36279	1	13878	13878		10.315	2.1597	1	1398900	+		9009	16656	4973	4973	11849	11849					-0.010302664368509795
FKEYSDRIL	9	Unmodified	_FKEYSDRIL_					0	0	0			REV__nc|ENSG00000204634|O95759-2|TBC1D8	REV__nc|ENSG00000204634|O95759-2|TBC1D8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135375976562	2	585.811313	1169.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.84	1	111.84	111.34	112.34	0								0	0	0	0.22666	1	29081	29081		13.906	2.4113	1		+		9010	18957	4974	4974	11850	11850					0.030053971604729668
FKFLKAKFGLG	11	Unmodified	_FKFLKAKFGLG_					0	0	0		nc|ENSG00000178904|Q6ZPD9-2|DPY19L3;ENSG00000178904|ENST00000392250|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.38330078125	2	628.381709	1254.74886	0.46917	0.00029482	0.69899	0.00043923	1.1682	0.00073405	628.3826006048772	83.955	2.7316	83.938	82.281	85.013	-0.01683					267	114	3	0	0	0	0.47649	1	21531	21531		1.1933	1.1933	1	8667400			9011	7082	4975	4975	11851	11851					0.1316802060455302
FKGAISPK	8	Unmodified	_FKGAISPK_					0	0	0			REV__nc|ENSG00000166948|O95932-2|TGM6	REV__nc|ENSG00000166948|O95932-2|TGM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.25537109375	2	424.255446	846.496338	-0.23976	-0.00010172	0.47265	0.00020052	0.23289	9.8804E-05	424.25547897731934	27.438	0.69447	27.438	27.146	27.84	0					54	23	3	0	0	0	0.11046	1	4674	4674		58.679	18.721	1	428900	+		9012	17352	4976	4976	11852	11852					0.06695007593987157
FKGAISPK	8	Unmodified	_FKGAISPK_					0	0	0			REV__nc|ENSG00000166948|O95932-2|TGM6	REV__nc|ENSG00000166948|O95932-2|TGM6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.24560546875	2	424.255446	846.496338	-0.23976	-0.00010172	0.47265	0.00020052	0.23289	9.8804E-05	424.25547897731934	27.438	0.69447	27.438	27.146	27.84	0					54	23	3	0	0	0	0.29394	1	4615	4615		36.127	7.6402	1	428900	+		9013	17352	4976	4976	11853	11853					0.06695007593987157
FKGAISPK	8	Unmodified	_FKGAISPK_					0	0	0			REV__nc|ENSG00000166948|O95932-2|TGM6	REV__nc|ENSG00000166948|O95932-2|TGM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.2553405761719	2	424.255446	846.496338	-0.32677	-0.00013863	0.61683	0.0002617	0.29006	0.00012306	424.2555019886237	27.385	0.73527	27.363	27.13	27.865	-0.021412					54	25	3	0	0	0	0.071344	1	4646	4646		68.081	15.812	1	462850	+		9014	17352	4976	4976	11854	11854					0.06695007593987157
FKGAISPK	8	Unmodified	_FKGAISPK_					0	0	0			REV__nc|ENSG00000166948|O95932-2|TGM6	REV__nc|ENSG00000166948|O95932-2|TGM6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.25537109375	2	424.255446	846.496338	-0.23664	-0.00010039	0.32148	0.00013639	0.08484	3.5994E-05	424.25544557040394	27.423	0.61961	27.411	27.132	27.752	-0.01156					45	21	3	0	0	0	0.10754	1	4648	4648		78.149	16.792	1	426960	+		9015	17352	4976	4976	11855	11855					0.06695007593987157
FKGAISPK	8	Unmodified	_FKGAISPK_					0	0	0			REV__nc|ENSG00000166948|O95932-2|TGM6	REV__nc|ENSG00000166948|O95932-2|TGM6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	424.255446	846.496338	-0.32677	-0.00013863	0.61683	0.0002617	0.29006	0.00012306	424.2555019886237	27.385	0.73527	27.363	27.13	27.865	-0.021412	-0.040825	0.00013437	NaN	68.081	54	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462850	+		9016	17352	4976	4976							0.06695007593987157
FKGTKQPQR	9	Unmodified	_FKGTKQPQR_					0	0	0			REV__ENST00000261226.8_1_12:94976313-95044322:-|nuORF	REV__ENST00000261226.8_1_12:94976313-95044322:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3117065429688	2	545.311815	1088.60908	0.38018	0.00020731	0.094961	5.1783E-05	0.47514	0.0002591	545.3118267566344	15.715	0.90649	15.651	15.158	16.064	-0.064414					67	30	4	0	0	0	0.33276	1	1183	1183		3.9444	1.6417	1	620570	+		9017	19586	4977	4977	11856	11856					0.06831656320036927
FKGVKYFR	8	Unmodified	_FKGVKYFR_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-6|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.793212890625	2	522.803094	1043.59164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.851	1	15.741	15.241	16.241	-0.10981								0	0	0	0.35466	1	1153	1153		12.532	2.4576	1				9018	1023	4978	4978	11857	11857					0.07158360785024342
FKLESFLPG	9	Unmodified	_FKLESFLPG_					0	0	0			REV__nc|ENSG00000028116|Q86Y07-3|VRK2	REV__nc|ENSG00000028116|Q86Y07-3|VRK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2794799804688	2	519.286943	1036.55933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.276	1	50.276	49.776	50.776	0								0	0	0	0.19013	1	11648	11648		25.399	2.663	1		+		9019	13487	4979	4979	11858	11858					0.042515285913850676
FKLMNIQPL	9	Unmodified	_FKLMNIQPL_					0	0	0			REV__ENST00000437916.2_1_2:45148822-45149500:-|nuORF	REV__ENST00000437916.2_1_2:45148822-45149500:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8077392578125	2	552.31772	1102.62089	0.51578	0.00028487	3.6078	0.0019927	4.1236	0.0022775	552.8211813356666	29.763	0.17351	29.763	29.659	29.833	0					7	5	2	0	0	0	0.25938	1	5346	5346		4.3292	0.73274	1	31583	+		9020	21019	4980	4980	11859	11859					0.07368137019011556
FKMFPSRLIK	10	Unmodified	_FKMFPSRLIK_					0	0	0			REV__nc|ENSG00000138741|Q13507-3|TRPC3	REV__nc|ENSG00000138741|Q13507-3|TRPC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8716430664062	2	633.873194	1265.73183	-0.062485	-3.9608E-05	1.8522	0.0011741	1.7897	0.0011344	634.3781808191137	112.9	0.29129	112.9	112.67	112.96	0					44	35	2	0	0	0	0.41085	1	29328	29328		1.4819	0	1	36432	+		9021	15951	4981	4981	11860	11860					0.10959776727099779
FKMKGNRAAE	10	Unmodified	_FKMKGNRAAE_					0	0	0			REV__ENSG00000147383|ENST00000370274|NSDHL	REV__ENSG00000147383|ENST00000370274|NSDHL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.3033447265625	2	576.303133	1150.59171	0.26602	0.00015331	0.12443	7.1709E-05	0.39045	0.00022502	576.3031840896465	20.359	0.49843	20.359	20.18	20.678	0					40	17	3	0	0	0	0.41168	1	2557	2557		1.3295	0.72803	1	152690	+		9022	16384	4982	4982	11861	11861					0.022439927227196677
FKMNDNPCRP	10	Unmodified	_FKMNDNPCRP_					0	0	0			REV__ENSG00000261667|ENST00000562505|LY6L	REV__ENSG00000261667|ENST00000562505|LY6L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.2787475585938	2	611.2788	1220.54305	-0.15255	-9.3252E-05	-0.19268	-0.00011778	-0.34523	-0.00021103	611.278957760997	27.825	0.75481	27.822	27.564	28.319	-0.0025024					75	26	4	0	0	0	0.41168	1	4747	4747		1.3295	0.13619	1	1028700	+		9023	19285	4983	4983	11862	11862					-0.05840243908687626
FKPFERHFR	9	Unmodified	_FKPFERHFR_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.8963317871094	3	421.896363	1262.66726	-0.12104	-5.1066E-05	0.013209	5.573E-06	-0.10783	-4.5493E-05	421.896550868908	39.953	2.023	39.953	39.48	41.504	0					274	73	5	0	0	0	0.26807	1	8683	8683		13.615	3.4643	1	10153000	+		9024	19349	4984	4984	11863	11863					0.04643337965308092
FKPFERHFR	9	Unmodified	_FKPFERHFR_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.89630126953125	3	421.896363	1262.66726	0.065111	2.747E-05	-0.24541	-0.00010354	-0.1803	-7.6068E-05	421.8964980885763	39.737	1.8121	39.836	39.424	41.236	0.099407					222	65	5	0	0	0	0.24247	1	8573	8573		17.443	3.0373	1	12922000	+		9025	19349	4984	4984	11864	11864					0.04643337965308092
FKPPVRRRR	9	Unmodified	_FKPPVRRRR_					0	0	0		ENST00000371953.7_1_10:89623706-89624018:+|nuORF	ENST00000371953.7_1_10:89623706-89624018:+|nuORF	ENST00000371953.7_1_10:89623706-89624018:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.37060546875	2	606.38344	1210.75233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.63	1	108.63	108.13	109.13	0								0	0	0	0.2672	1	28506	28506		0.52476	0.066424	1				9026	9830	4985	4985	11865	11865					0.15538128221760417
FKPSQNQNQSI	11	Unmodified	_FKPSQNQNQSI_					0	0	0		Harlequin-int_dup273|chr7:135172192-135172846:+|1.0001858604204727|0.1424182930396835|2.81|542.0|27|1|anti-sense	Harlequin-int_dup273|chr7:135172192-135172846:+|1.0001858604204727|0.1424182930396835|2.81|542.0|27|1|anti-sense	Harlequin-int_dup273|chr7:135172192-135172846:+|1.0001858604204727|0.1424182930396835|2.81|542.0|27|1|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.88714599609375	3	430.886081	1289.63641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.189	1	15.125	14.625	15.625	-0.064413								0	0	0	0.28435	1	951	951		14.171	1.3148	1				9027	12368	4986	4986	11866	11866					0.0031809506976969715
FKPYLPPK	8	Unmodified	_FKPYLPPK_					0	0	0		ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7754821777344	2	495.294571	988.574589	-0.078896	-3.9077E-05	1.7895	0.00088632	1.7106	0.00084724	495.29510699888976	12.458	0.38387	12.39	12.196	12.579	-0.06806					16	12	2	0	0	0	0.34408	1	76	76		2.3027	0.24298	1	22237			9028	6292	4987	4987	11867	11867					0.07984440179234298
FKQRLCQR	8	Unmodified	_FKQRLCQR_					0	0	0			REV__ENST00000475468.5_1_10:79795275-79795332:+|nuORF	REV__ENST00000475468.5_1_10:79795275-79795332:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.985595703125	2	539.80056	1077.58657	0.087267	4.7107E-05	-2.0641	-0.0011142	-1.9769	-0.0010671	540.3014788147259	98.95	0.36195	98.95	98.76	99.122	0					67	43	2	0	0	0	0.34272	1	26525	26525		7.9102	0.62092	1	61379	+		9029	21407	4988	4988	11868	11868					0.050877336507710424
FKRAFSKLKGT	11	Unmodified	_FKRAFSKLKGT_					0	0	0			REV__nc|ENSG00000008838|O75448-2|MED24	REV__nc|ENSG00000008838|O75448-2|MED24	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.883056640625	2	641.885147	1281.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.31	1	101.34	100.84	101.84	0.027206								0	0	0	0.38146	1	27024	27024		0.96228	0.43751	1		+		9030	13403	4989	4989	11869	11869					0.1261333348509197
FKRKWCLFD	9	Unmodified	_FKRKWCLFD_					0	0	0		ENST00000261601.7_1_18:203173-204660:+|nuORF	ENST00000261601.7_1_18:203173-204660:+|nuORF	ENST00000261601.7_1_18:203173-204660:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8957824707031	3	414.886588	1241.63793	0.37106	0.00015395	2.5598	0.001062	2.9309	0.001216	414.8886456211147	45.015	0.16689	45.09	45.042	45.209	0.075047					6	5	2	0	0	0	0.25779	1	10011	10011		3.8763	2.4212	1	38799			9031	8970	4990	4990	11870	11870					0.02678057624802932
FKRKYGKS	8	Unmodified	_FKRKYGKS_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000560014.5_1_15:60639831-60644581:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.3099670410156	2	507.298176	1012.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.328	1	95.326	94.826	95.826	-0.0021973								0	0	0	0.36169	1	25462	25462		9.3474	0.75416	1				9032	7313	4991	4991	11871	11871					0.07601172779664012
FKRRRQKKRHF	11	Unmodified	_FKRRRQKKRHF_					0	0	0			REV__ENST00000315596.14_2_13:33347406-33347460:+|nuORF	REV__ENST00000315596.14_2_13:33347406-33347460:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.993408203125	3	529.658681	1585.95422	0.096608	5.1169E-05	1.1667	0.00061798	1.2634	0.00066914	529.9931112561684	35.501	0.50113	35.587	35.317	35.818	0.08625					44	17	3	0	0	0	0.48558	1	7103	7103		0	0	1	1085800	+		9033	19933	4992	4992	11872	11872					0.18467611907340142
FKRRRQKKRHF	11	Unmodified	_FKRRRQKKRHF_					0	0	0			REV__ENST00000315596.14_2_13:33347406-33347460:+|nuORF	REV__ENST00000315596.14_2_13:33347406-33347460:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2510375976562	3	529.658681	1585.95422	0.096608	5.1169E-05	1.1667	0.00061798	1.2634	0.00066914	529.9931112561684	35.501	0.50113	35.587	35.317	35.818	0.08625					44	17	3	0	0	0	0.33352	1	7049	7049		0	0	1	1085800	+		9034	19933	4992	4992	11873	11873					0.18467611907340142
FKRSVRRRLIY	11	Unmodified	_FKRSVRRRLIY_					0	0	0		ENSG00000278570|ENST00000617575|NR2E3;nc|ENSG00000278570|Q9Y5X4-2|NR2E3	ENSG00000278570|ENST00000617575|NR2E3	ENSG00000278570|ENST00000617575|NR2E3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.64453125	3	498.644038	1492.91028	0.50903	0.00025382	0.30332	0.00015125	0.81235	0.00040507	498.6441965379892	92.33	0.43753	92.33	92.192	92.63	0.00047302					79	31	3	0	0	0	0.48558	1	24546	24546		0	0	1	606530			9035	8744	4993	4993	11874	11874					0.18354582690380994
FKRTRITV	8	Unmodified	_FKRTRITV_					0	0	0			REV__nc|ENSG00000138326|P62847-4|RPS24	REV__nc|ENSG00000138326|P62847-4|RPS24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2750244140625	2	510.819276	1019.624	0.55744	0.00028475	-0.17159	-8.7651E-05	0.38585	0.0001971	511.3206919921396	20.468	0.40852	20.415	20.229	20.638	-0.052912					15	14	2	0	0	0	0.34272	1	2578	2578		7.9102	0	1	92569	+		9036	23009	4994	4994	11875	11875					0.11497148188027495
FKTARATQG	9	Unmodified	_FKTARATQG_					0	0	0			REV__nc|ENSG00000138231|Q9UK59-2|DBR1	REV__nc|ENSG00000138231|Q9UK59-2|DBR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2690734863281	2	490.269616	978.524678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.484	1	74.484	73.984	74.984	0								0	0	0	0.24066	1	19089	19089		9.3831	0.035688	1		+		9037	15913	4995	4995	11876	11876					0.03455705503290574
FKTFCLLVI	9	Unmodified	_FKTFCLLVI_					0	0	0			REV__ENSG00000145740|ENST00000396591|SLC30A5	REV__ENSG00000145740|ENST00000396591|SLC30A5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3364868164062	2	542.317189	1082.61982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.358	1	95.438	94.938	95.938	0.080391								0	0	0	0.24715	1	25468	25468		7.2892	0	1		+		9038	16305	4996	4996	11877	11877					0.08181922650101114
FKTINWTL	8	Unmodified	_FKTINWTL_					0	0	0		ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	ENSG00000163932|ENST00000330452|PRKCD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2789916992188	2	511.78711	1021.55967	0.29512	0.00015104	-1.4589	-0.00074667	-1.1638	-0.00059563	512.2897511658078	75.034	0.56227	75.086	74.865	75.427	0.052361					26	20	2	0	0	0	0.30157	1	19198	19198		30.637	1.555	1	132930			9039	5759	4997	4997	11878	11878					0.0497494831122367
FKTKRYFP	8	Unmodified	_FKTKRYFP_					0	0	0		ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-5|SLC4A7;ENST00000475120.1_1_3:27439670-27439817:-|nuORF	ENSG00000033867|ENST00000454389|SLC4A7	ENSG00000033867|ENST00000454389|SLC4A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7955322265625	2	543.808377	1085.6022	0.63905	0.00034752	0.24702	0.00013433	0.88607	0.00048185	544.3101186332657	37.573	0.45921	37.66	37.358	37.817	0.08741					36	16	3	0	0	0	0.42758	1	7752	7752		13.508	1.8676	1	232840			9040	564	4998	4998	11879	11879					0.06282343439443139
FKTTIPHVLLT	11	Unmodified	_FKTTIPHVLLT_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	635.3839111328125	2	635.381906	1268.74926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.375	1	96.375	95.875	96.875	0								0	0	0	0.38137	1	25748	25748		1.0715	0.67075	1				9041	3139	4999	4999	11880	11880					0.1256339553374346
FKTTIPHVLLT	11	Unmodified	_FKTTIPHVLLT_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	635.3845825195312	2	635.381906	1268.74926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.809	1	96.809	96.309	97.309	0								0	0	0	0.38137	1	25877	25877		1.0715	0.67075	1				9042	3139	4999	4999	11881	11881					0.1256339553374346
FKTVFYFYK	9	Unmodified	_FKTVFYFYK_					0	0	0			REV__ENST00000394479.3_1_2:61145373-61145537:+|nuORF	REV__ENST00000394479.3_1_2:61145373-61145537:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.5628967285156	3	414.890104	1241.64848	-0.029415	-1.2204E-05	1.8439	0.00076502	1.8145	0.00075282	414.8909807811593	15.522	0.38938	15.458	15.247	15.636	-0.064413					24	12	3	0	0	0	0.25689	1	1103	1103		7.609	3.4923	1	42660	+		9043	20620	5000	5000	11882	11882					0.037323635508755615
FKTVFYFYK	9	Unmodified	_FKTVFYFYK_					0	0	0			REV__ENST00000394479.3_1_2:61145373-61145537:+|nuORF	REV__ENST00000394479.3_1_2:61145373-61145537:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	414.890104	1241.64848	0.073561	3.052E-05	1.8733	0.00077722	1.9469	0.00080774	414.89089111830316	15.557	0.35134	15.447	15.259	15.61	-0.10981	0.0031532	-0.00032976	NaN	7.609	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36284	+		9044	20620	5000	5000							0.037323635508755615
FKVFDFELSS	10	Unmodified	_FKVFDFELSS_					0	0	0		ENSG00000085662|ENST00000285930|AKR1B1;ENST00000467251.1_1_7:134129988-134132130:-|nuORF	ENSG00000085662|ENST00000285930|AKR1B1	ENSG00000085662|ENST00000285930|AKR1B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.56927490234375	3	406.87289	1217.59684	-0.18421	-7.4948E-05	-3.8137	-0.0015517	-3.9979	-0.0016266	406.872386877738	16.021	0.57394	15.958	15.547	16.121	-0.062534					26	19	2	0	0	0	0.32139	1	1244	1244		0.56317	0	1	39709			9045	1260	5001	5001	11883	11883					-0.003254249336578141
FKWLLGAALAA	11	Unmodified	_FKWLLGAALAA_					0	0	0			REV__ENSG00000184012|ENST00000332149|TMPRSS2	REV__ENSG00000184012|ENST00000332149|TMPRSS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8452758789062	2	580.844959	1159.67537	0.44564	0.00025885	0.46777	0.0002717	0.91341	0.00053055	580.8452393570303	87.367	0.70049	87.367	87.17	87.87	0					84	33	4	0	0	0	0.41896	1	23069	23069		8.7454	8.7454	1	440430	+		9046	18298	5002	5002	11884	11884					0.10191472162091486
FKWMYFYF	8	Unmodified	_FKWMYFYF_					0	0	0			REV__ENSG00000197106|ENST00000331565|SLC6A17	REV__ENSG00000197106|ENST00000331565|SLC6A17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.1933898925781	3	411.193018	1230.55722	-0.032115	-1.3205E-05	0.59378	0.00024416	0.56167	0.00023095	411.1932402022588	17.462	0.78563	17.345	17.111	17.896	-0.11739					85	27	4	0	0	0	0.44569	1	1659	1659		7.2892	1.5574	1	494050	+		9047	18709	5003	5003	11885	11885					-0.04883223418073612
FKWQQGHQL	9	Unmodified	_FKWQQGHQL_					0	0	0		nc|ENSG00000100890|O15091-4|PRORP;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP;nc|ENSG00000100890|O15091-3|PRORP	nc|ENSG00000100890|O15091-4|PRORP	nc|ENSG00000100890|O15091-4|PRORP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8339233398438	2	586.30399	1170.59343	0.35794	0.00020986	-2.6229	-0.0015378	-2.265	-0.0013279	586.3021156603618	80.399	1.2873	80.372	79.778	81.065	-0.026825					67	47	3	0	0	0	0.25202	1	21046	21046		10.824	0.024421	1	206660			9048	1642	5004	5004	11886	11886					0.014953698030012674
FKWQVKIALM	10	Unmodified	_FKWQVKIALM_					0	0	0			REV__ENST00000298049.11_1_20:62119378-62119654:-|nuORF	REV__ENST00000298049.11_1_20:62119378-62119654:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.5574951171875	3	421.914255	1262.72094	-0.35744	-0.00015081	2.7001	0.0011392	2.3427	0.00098842	421.9153886066375	14.119	0.41615	14.014	13.633	14.049	-0.10466					28	14	3	0	0	0	0.3213	1	540	540		0.69767	0	1	87923	+		9049	19805	5005	5005	11887	11887					0.10008374352787541
FLADKQREL	9	Unmodified	_FLADKQREL_					0	0	0		ENSG00000138587|ENST00000260453|MNS1	ENSG00000138587|ENST00000260453|MNS1	ENSG00000138587|ENST00000260453|MNS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.765869140625	2	560.31148	1118.60841	0.28339	0.00015879	0.077856	4.3624E-05	0.36124	0.00020241	560.3114707388366	32.898	0.25718	32.898	32.782	33.039	0					13	8	2	0	0	0	0.25779	1	6307	6307		6.2058	0	1	91377			9050	4157	5006	5006	11888	11888					0.053848168803369845
FLAHVRGSSCF	11	Unmodified	_FLAHVRGSSCF_					0	0	0		ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.2062683105469	3	408.537847	1222.59171	-0.2539	-0.00010373	2.3119	0.00094449	2.058	0.00084076	408.53877622937654	25.628	0.5444	25.572	25.281	25.826	-0.055931					39	18	3	0	0	0	0.33046	1	4186	4186		3.0723	1.48	1	317770			9051	1434	5007	5007	11889	11889					-0.0106800727726295
FLAKKQKQN	9	Unmodified	_FLAKKQKQN_					0	0	0		ENSG00000198918|ENST00000361575|RPL39;nc|ENSG00000214289|Q59GN2|RPL39P5;ENSG00000163923|ENST00000296277|RPL39L	ENSG00000198918|ENST00000361575|RPL39;ENSG00000163923|ENST00000296277|RPL39L	ENSG00000163923|ENST00000296277|RPL39L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3043823242188	2	552.82984	1103.64513	0.14883	8.228E-05	0.47354	0.00026179	0.62237	0.00034407	552.8301269057625	14.98	0.21785	14.87	14.765	14.982	-0.10981					11	7	2	0	0	0	0.26168	1	876	876		1.8442	0	1	59430			9052	8159;5757	5008	5008	11890	11890					0.09745113496910562
FLALRRPHSL	10	Unmodified	_FLALRRPHSL_					0	0	0			REV__ENST00000532281.1_3_11:46639193-46639418:-|nuORF	REV__ENST00000532281.1_3_11:46639193-46639418:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.51495361328125	3	403.912013	1208.71421	-0.2174	-8.7809E-05	-1.0029	-0.0004051	-1.2203	-0.00049291	403.911479276025	16.29	0.52483	16.227	15.943	16.468	-0.062534					26	16	2	0	0	0	0.31911	1	1354	1354		6.6304	0	1	62188	+		9053	22031	5009	5009	11891	11891					0.11820197516453845
FLASALVRYVV	11	Unmodified	_FLASALVRYVV_					0	0	0			REV__ENST00000528927.5_1_11:418373-431830:-|nuORF;REV__ENST00000532094.5_1_11:420655-431830:-|nuORF;REV__ENST00000526142.5_1_11:419653-429752:-|nuORF	REV__ENST00000532094.5_1_11:420655-431830:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8688354492188	2	619.368798	1236.72304	0.37078	0.00022965	1.7351	0.0010747	2.1059	0.0013043	619.370569418945	91.757	1.4647	91.757	91.303	92.768	0.00046539					206	95	3	0	0	0	0.46475	1	24608	24608		2.7352	1.0826	1	1022300	+		9054	18355;22028;21960	5010	5010	11892	11892					0.11415126362271621
FLAWFMPL	8	Unmodified	_FLAWFMPL_					0	0	0			REV__ENSG00000088386|ENST00000376503|SLC15A1	REV__ENSG00000088386|ENST00000376503|SLC15A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2830810546875	2	512.769874	1023.5252	0.08276	4.2437E-05	-2.2872	-0.0011728	-2.2044	-0.0011304	512.7687015014152	19.057	0.61137	18.939	18.647	19.258	-0.11739					34	21	2	0	0	0	0.34297	1	2156	2156		6.3541	5.9534	1	38788	+		9055	14007	5011	5011	11893	11893					0.014374088987665345
FLAWLGVF	8	Unmodified	_FLAWLGVF_					0	0	0		ENSG00000165716|ENST00000371692|DIPK1B	ENSG00000165716|ENST00000371692|DIPK1B	ENSG00000165716|ENST00000371692|DIPK1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7685241699219	2	476.768189	951.521825	0.22081	0.00010528	0.61742	0.00029437	0.83824	0.00039964	476.76842913988816	71.578	1.5978	71.578	71.098	72.696	0					92	57	2	0	0	0	0.44842	1	18241	18241		6.3541	3.4649	1	463030			9056	5995	5012	5012	11894	11894					0.044124821164245986
FLAWLGVF	8	Unmodified	_FLAWLGVF_					0	0	0		ENSG00000165716|ENST00000371692|DIPK1B	ENSG00000165716|ENST00000371692|DIPK1B	ENSG00000165716|ENST00000371692|DIPK1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	476.768189	951.521825	0.34956	0.00016666	0.54685	0.00026072	0.89642	0.00042738	476.7683714744134	71.576	1.6387	71.549	71.157	72.795	-0.027275	-0.014504	-3.353E-05	NaN	6.3541	110	58	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340480			9057	5995	5012	5012							0.044124821164245986
FLCHCPAAF	9	Unmodified	_FLCHCPAAF_					0	0	0		ENST00000262715.9_2_14:20872800-20872851:-|nuORF	ENST00000262715.9_2_14:20872800-20872851:-|nuORF	ENST00000262715.9_2_14:20872800-20872851:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7754211425781	2	504.725141	1007.43573	0.42311	0.00021355	1.7926	0.00090478	2.2157	0.0011183	504.7259423624344	72.614	0.57138	72.668	72.352	72.924	0.053833					36	20	2	0	0	0	0.24542	1	18452	18452		14.582	2.0501	1	218300			9058	8989	5013	5013	11895	11895					-0.06769169052267898
FLCHVPAGII	10	Unmodified	_FLCHVPAGII_					0	0	0			REV__ENST00000286298.4_1_5:149357505-149357733:+|nuORF	REV__ENST00000286298.4_1_5:149357505-149357733:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7794189453125	2	535.296788	1068.57902	0.63563	0.00034025	3.3525	0.0017946	3.9881	0.0021348	535.2975753801882	76.681	0.15522	76.649	76.599	76.754	-0.031487					6	5	2	0	0	0	0.25344	1	19740	19740		32.117	9.3807	1	78781	+		9059	19734	5014	5014	11896	11896					0.047475813304799885
FLCLALPWRI	10	Unmodified	_FLCLALPWRI_					0	0	0			REV__ENSG00000165970|ENST00000525748|SLC6A5	REV__ENSG00000165970|ENST00000525748|SLC6A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2271423339844	3	411.23885	1230.69472	-0.19239	-7.9117E-05	-0.50925	-0.00020942	-0.70164	-0.00028854	411.23856014343596	23.752	0.71407	23.752	23.48	24.194	0					64	24	4	0	0	0	0.38284	1	3507	3507		6.6304	0.39602	1	411240	+		9060	17283	5015	5015	11897	11897					0.08860105181315703
FLDAFNVF	8	Unmodified	_FLDAFNVF_					0	0	0			REV__ENSG00000254470|ENST00000532090|AP5B1	REV__ENSG00000254470|ENST00000532090|AP5B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2637634277344	2	486.744911	971.475269	0.47122	0.00022937	-0.85588	-0.00041659	-0.38465	-0.00018723	486.7445235645211	45.218	0.62333	45.286	45.062	45.685	0.068569					36	21	2	0	0	0	0.32435	1	10056	10056		16.942	0	1	493770	+		9061	19236	5016	5016	11898	11898					-0.011610025055233564
FLDAFNVF	8	Unmodified	_FLDAFNVF_					0	0	0			REV__ENSG00000254470|ENST00000532090|AP5B1	REV__ENSG00000254470|ENST00000532090|AP5B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2639465332031	2	486.744911	971.475269	0.40556	0.00019741	-0.75873	-0.00036931	-0.35317	-0.0001719	486.7446805888789	45.201	0.59026	45.276	45.042	45.633	0.07505					47	21	4	0	0	0	0.33245	1	10006	10006		19.439	2.4967	1	481210	+		9062	19236	5016	5016	11899	11899					-0.011610025055233564
FLDCVQQFK	9	Unmodified	_FLDCVQQFK_					0	0	0		ENSG00000126581|ENST00000590099|BECN1	ENSG00000126581|ENST00000590099|BECN1	ENSG00000126581|ENST00000590099|BECN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.8113403320312	2	564.281334	1126.54812	0.41857	0.00023619	-1.1894	-0.00067116	-0.77083	-0.00043496	564.7806985601082	38.558	0.10793	38.649	38.594	38.702	0.090881					5	3	2	0	0	0	0.24913	1	8051	8051		12.532	0	1	120610			9063	3279	5017	5017	11900	11900					-0.010096167743995466
FLDDLTSEI	9	Unmodified	_FLDDLTSEI_					0	0	0			REV__nc|ENSG00000188157|O00468-2|AGRN	REV__nc|ENSG00000188157|O00468-2|AGRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.8025512695312	2	526.760955	1051.50736	0.3287	0.00017314	0.18341	9.6615E-05	0.51211	0.00026976	526.7609806912872	64.991	0.64594	64.991	64.699	65.345	0					37	23	2	0	0	0	0.17611	1	16195	16195		26.884	2.2098	1	270020	+		9064	18542	5018	5018	11901	11901					-0.016336796130417497
FLDFFLKASR	10	Unmodified	_FLDFFLKASR_					0	0	0			REV__ENSG00000215644|ENST00000400723|GCGR	REV__ENSG00000215644|ENST00000400723|GCGR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3458251953125	2	622.345323	1242.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.594	1	88.594	88.094	89.094	0								0	0	0	0.37664	1	23410	23410		3.5965	0	1		+		9065	19081	5019	5019	11902	11902					0.06446266811144596
FLDFTALLF	9	Unmodified	_FLDFTALLF_					0	0	0		ENST00000574829.5_1_17:4643771-4647168:+|nuORF;nc|ENSG00000141497|Q9H091-2|ZMYND15;ENSG00000141497|ENST00000433935|ZMYND15;nc|ENSG00000141497|Q9H091-3|ZMYND15	ENST00000574829.5_1_17:4643771-4647168:+|nuORF	ENST00000574829.5_1_17:4643771-4647168:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.7974853515625	2	543.797143	1085.57973	0.69419	0.0003775	-0.20774	-0.00011297	0.48646	0.00026454	543.7968685583718	89.463	1.4062	89.462	88.998	90.404	-0.00080872					138	99	2	0	0	0	0.193	1	23726	23726		24.674	5.2349	1	491730			9066	4385	5020	5020	11903	11903					0.04036699251173559
FLDIRSFII	9	Unmodified	_FLDIRSFII_					0	0	0			REV__nc|ENSG00000058804|Q9BTX1-4|NDC1	REV__nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3187866210938	2	562.329142	1122.64373	0.35488	0.00019956	0.14612	8.2165E-05	0.50099	0.00028172	562.3291521596597	71.283	0.6694	71.343	71.117	71.787	0.060783					52	23	3	0	0	0	0.27532	1	18105	18105		12.532	3.1484	1	1391200	+		9067	13610	5021	5021	11904	11904					0.08731479408129417
FLDMQPKVIK	10	Unmodified	_FLDMQPKVIK_					0	0	0			REV__ENST00000370654.5_1_1:84956134-84961070:+|nuORF	REV__ENST00000370654.5_1_1:84956134-84961070:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9153747558594	3	406.902015	1217.68422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.393	1	34.471	33.971	34.971	0.077377								0	0	0	0.35216	1	6771	6771		12.175	2.4105	1		+		9068	20387	5022	5022	11905	11905					0.08408077736248742
FLDQAEAEFL	10	Unmodified	_FLDQAEAEFL_					0	0	0			REV__ENSG00000103966|ENST00000220325|EHD4	REV__ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.7877807617188	2	591.787504	1181.56045	0.48291	0.00028578	-0.58133	-0.00034402	-0.098419	-5.8243E-05	591.7870122036916	71.594	0.85511	71.567	71.288	72.143	-0.027275					57	30	3	0	0	0	0.18128	1	18169	18169		34.932	2.1464	1	1112300	+		9069	14389	5023	5023	11906	11906					-0.023063018303901117
FLDSVFFVI	9	Unmodified	_FLDSVFFVI_					0	0	0			REV__ENST00000459962.1_1_1:56962225-56977851:-|nuORF	REV__ENST00000459962.1_1_1:56962225-56977851:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.26904296875	2	543.797143	1085.57973	0.56235	0.0003058	0.21316	0.00011592	0.77551	0.00042172	543.7969477416674	89.521	0.84395	89.521	89.131	89.975	0					110	54	3	0	0	0	0.24913	1	23663	23663		12.532	3.9383	1	263080	+		9070	16978	5024	5024	11907	11907					0.04036699251196296
FLEAAQLWIQ	10	Unmodified	_FLEAAQLWIQ_					0	0	0			REV__ENSG00000068724|ENST00000319190|TTC7A	REV__ENSG00000068724|ENST00000319190|TTC7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.8890075683594	3	406.888763	1217.64446	-0.17151	-6.9786E-05	-0.28598	-0.00011636	-0.45749	-0.00018615	406.8889824325737	17.958	1.1901	17.958	17.424	18.614	0					116	40	5	0	0	0	0.36698	1	1778	1778		9.544	0.56773	1	379940	+		9071	13704	5025	5025	11908	11908					0.044342740571892136
FLEATTTLN	9	Unmodified	_FLEATTTLN_					0	0	0		ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2768859863281	2	505.263665	1008.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.436	1	73.407	72.907	73.907	-0.029305								0	0	0	0.21726	1	18755	18755		16.942	1.1741	1				9072	1017	5026	5026	11909	11909					0.008860439694217348
FLEDDTLKRL	10	Unmodified	_FLEDDTLKRL_					0	0	0			REV__ENSG00000171608|ENST00000377346|PIK3CD	REV__ENSG00000171608|ENST00000377346|PIK3CD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.1891174316406	3	417.231077	1248.6714	0.29512	0.00012313	0.44107	0.00018403	0.73619	0.00030716	417.23122131705173	44.512	0.85014	44.587	44.333	45.183	0.075047					38	30	2	0	0	0	0.31746	1	10038	10038		9.544	1.935	1	220360	+		9073	17656	5027	5027	11910	11910					0.05701337877735568
FLEELLFW	8	Unmodified	_FLEELLFW_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;UBR3|p.G1350Afs*47|1|0.06|ENSG00000144357|chr2:170007007-170007007|G/-|frameshift_variant	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7710571289062	2	548.789318	1095.56408	0.52992	0.00029081	-0.54103	-0.00029691	-0.011113	-6.0985E-06	548.7890464870615	20.705	0.37887	20.705	20.594	20.973	0					18	12	2	0	0	0	0.34434	1	2675	2675		0.79363	0.79363	1	48558			9074	4577	5028	5028	11911	11911					0.02012412734143254
FLEPFKLN	8	Unmodified	_FLEPFKLN_					0	0	0			REV__ENSG00000183439|ENST00000710271|TRIM61	REV__ENSG00000183439|ENST00000710271|TRIM61	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2635498046875	2	504.28166	1006.54877	0.38364	0.00019346	0.035988	1.8148E-05	0.41963	0.00021161	504.28119375428867	66.711	0.98158	66.711	66.211	67.193	0					60	34	3	0	0	0	0.34046	1	16611	16611		14.582	14.582	1	241950	+		9075	18262	5029	5029	11912	11912					0.045755459369502205
FLEQVHDTSF	10	Unmodified	_FLEQVHDTSF_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3;TET3|p.N1450Kfs*21|1|0.29|ENSG00000187605|chr2:74101135-74101136|-/A|frameshift_variant;nc|ENSG00000187605|O43151-3|TET3;ENST00000475405.2_1_2:74274397-74300767:+|nuORF	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.7909545898438	2	611.790578	1221.5666	0.29316	0.00017935	0.98026	0.00059971	1.2734	0.00077907	611.7910401403948	76.642	0.58771	76.642	76.396	76.983	0					44	21	3	0	0	0	0.25219	1	19762	19762		26.268	4.7312	1	314720			9076	7695	5030	5030	11913	11913					-0.03531783598873517
FLEQVHDTSF	10	Unmodified	_FLEQVHDTSF_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3;TET3|p.N1450Kfs*21|1|0.29|ENSG00000187605|chr2:74101135-74101136|-/A|frameshift_variant;nc|ENSG00000187605|O43151-3|TET3;ENST00000475405.2_1_2:74274397-74300767:+|nuORF	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.7919311523438	2	611.790578	1221.5666	0.11489	7.029E-05	0.92167	0.00056387	1.0366	0.00063416	611.7911498612751	76.584	0.58516	76.637	76.423	77.008	0.053413					41	20	3	0	0	0	0.22916	2	19700	19700;19760		29.082	4.0906	1	291390			9077	7695	5030	5030	11914;11915	11914					-0.03531783598873517
FLEQVHDTSF	10	Unmodified	_FLEQVHDTSF_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3;TET3|p.N1450Kfs*21|1|0.29|ENSG00000187605|chr2:74101135-74101136|-/A|frameshift_variant;nc|ENSG00000187605|O43151-3|TET3;ENST00000475405.2_1_2:74274397-74300767:+|nuORF	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.7913208007812	2	611.790578	1221.5666	0.43827	0.00026813	0.77557	0.00047449	1.2138	0.00074261	611.7909636414566	76.669	0.62027	76.638	76.37	76.991	-0.031487					49	22	3	0	0	0	0.22916	1	19733	19733		29.082	2.1979	1	345270			9078	7695	5030	5030	11916	11916					-0.03531783598873517
FLERPSRDH	9	Unmodified	_FLERPSRDH_					0	0	0		NFATC3|p.A458Hfs*9|1|0.35|ENSG00000072736|chr16:68126577-68126577|A/-|frameshift_variant;nc|ENSG00000072736|Q12968-5|NFATC3;nc|ENSG00000072736|Q12968-6|NFATC3;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-3|NFATC3;nc|ENSG00000072736|Q12968-2|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF;ENSG00000072736|ENST00000346183|NFATC3;ENST00000569766.5_1_16:68118971-68260371:+|nuORF	NFATC3|p.A458Hfs*9|1|0.35|ENSG00000072736|chr16:68126577-68126577|A/-|frameshift_variant	NFATC3|p.A458Hfs*9|1|0.35|ENSG00000072736|chr16:68126577-68126577|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.7838134765625	2	578.796529	1155.5785	0.13032	7.5427E-05	-0.95212	-0.00055108	-0.8218	-0.00047565	578.796160158038	28.957	0.51964	28.97	28.728	29.248	0.013474					40	18	4	0	0	0	0.23007	1	5083	5083		19.257	3.4098	1	325670			9079	987	5031	5031	11917	11917					0.006938779349866309
FLERQFSIT	9	Unmodified	_FLERQFSIT_					0	0	0		ENST00000531756.5_1_11:74862426-74914042:+|nuORF;nc|ENSG00000137491|O94956-2|SLCO2B1;nc|ENSG00000137491|O94956-4|SLCO2B1;nc|ENSG00000137491|O94956-3|SLCO2B1;ENSG00000137491|ENST00000289575|SLCO2B1	ENST00000531756.5_1_11:74862426-74914042:+|nuORF	ENST00000531756.5_1_11:74862426-74914042:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2608032226562	2	570.806031	1139.59751	0.096401	5.5026E-05	3.8472	0.002196	3.9436	0.002251	570.8077942064707	34.158	0.43922	34.225	33.967	34.406	0.0667					21	15	2	0	0	0	0.25622	1	6664	6664		7.2892	1.0834	1	105010			9080	4050	5032	5032	11918	11918					0.0332941450603812
FLEWLTELCA	10	Unmodified	_FLEWLTELCA_					0	0	0			REV__ENST00000357700.10_1_10:5681695-5681884:-|nuORF	REV__ENST00000357700.10_1_10:5681695-5681884:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.3142700195312	2	612.8021	1223.58965	0.12107	7.419E-05	0.52959	0.00032453	0.65065	0.00039872	612.8021729486616	76.3	0.49808	76.3	75.976	76.474	0					28	17	2	0	0	0	0.31942	1	19571	19571		6.7232	2.7788	1	200990	+		9081	20221	5033	5033	11919	11919					-0.013204808057480477
FLFGVVWYLV	10	Unmodified	_FLFGVVWYLV_					0	0	0		ENSG00000177807|ENST00000644903|KCNJ10	ENSG00000177807|ENST00000644903|KCNJ10	ENSG00000177807|ENST00000644903|KCNJ10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.9031066894531	3	414.902232	1241.68487	0.28114	0.00011665	1.0981	0.00045562	1.3793	0.00057227	414.90294800203577	38.638	1.737	38.729	38.011	39.748	0.090881					186	62	4	0	0	0	0.39612	1	8039	8039		4.1895	4.1895	1	2420800			9082	7016	5034	5034	11920	11920					0.07369240447610537
FLFGVVWYLV	10	Unmodified	_FLFGVVWYLV_					0	0	0		ENSG00000177807|ENST00000644903|KCNJ10	ENSG00000177807|ENST00000644903|KCNJ10	ENSG00000177807|ENST00000644903|KCNJ10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.9031677246094	3	414.902232	1241.68487	0.33937	0.0001408	1.1052	0.00045856	1.4446	0.00059936	414.9029769354514	38.632	1.777	38.729	37.871	39.648	0.097527					205	63	5	0	0	0	0.39612	1	8025	8025		4.1895	4.1895	1	2496000			9083	7016	5034	5034	11921	11921					0.07369240447610537
FLFQKSAS	8	Unmodified	_FLFQKSAS_					0	0	0		ENST00000441501.5_1_22:20862376-20862469:+|nuORF	ENST00000441501.5_1_22:20862376-20862469:+|nuORF	ENST00000441501.5_1_22:20862376-20862469:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.2662658691406	2	464.25036	926.486168	-0.19687	-9.1398E-05	-0.60019	-0.00027864	-0.79706	-0.00037004	464.24895416308397	27.365	0.22192	27.344	27.242	27.464	-0.021412					10	7	2	0	0	0	0.344	1	4633	4633		2.5775	0	1	33091			9084	10555	5035	5035	11922	11922					0.01998399868762135
FLFRGCTEL	9	Unmodified	_FLFRGCTEL_					0	0	0			REV__ENSG00000151461|ENST00000357604|UPF2	REV__ENSG00000151461|ENST00000357604|UPF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2855834960938	2	543.276052	1084.53755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.794	1	58.794	58.294	59.294	0								0	0	0	0.16757	1	14275	14275		30.637	2.1497	1		+		9085	16541	5036	5036	11923	11923					-0.0013359942884108023
FLFRYWYQ	8	Unmodified	_FLFRYWYQ_					0	0	0		ENST00000281419.7_1_2:9543485-9543617:+|nuORF	ENST00000281419.7_1_2:9543485-9543617:+|nuORF	ENST00000281419.7_1_2:9543485-9543617:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.56915283203125	3	408.206315	1221.59712	-0.30595	-0.00012489	-1.5019	-0.0006131	-1.8079	-0.00073799	408.5396815812113	15.55	0.18151	15.55	15.498	15.679	0					6	5	2	0	0	0	0.34424	1	1093	1093		1.6526	0	1	27715			9086	9121	5037	5037	11924	11924					-0.004819604231443009
FLFWNHWA	8	Unmodified	_FLFWNHWA_					0	0	0		ENST00000522606.5_3_8:42025727-42026576:+|nuORF	ENST00000522606.5_3_8:42025727-42026576:+|nuORF	ENST00000522606.5_3_8:42025727-42026576:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2390747070312	2	560.771794	1119.52904	-0.16428	-9.2124E-05	1.1212	0.00062873	0.95691	0.00053661	561.2738044843951	12.889	0.20222	12.821	12.702	12.905	-0.067496					10	6	2	0	0	0	0.34319	1	226	226		5.7604	2.1639	1	34388			9087	11501	5038	5038	11925	11925					-0.025947852831677665
FLFYLLPM	8	Unmodified	_FLFYLLPM_					0	0	0		ENSG00000132911|ENST00000255262|NMUR2	ENSG00000132911|ENST00000255262|NMUR2	ENSG00000132911|ENST00000255262|NMUR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8139038085938	2	522.285357	1042.55616	0.47122	0.00024611	-0.36244	-0.00018929	0.10879	5.6818E-05	522.2849954117739	37.757	0.37485	37.848	37.667	38.042	0.090881					22	13	2	0	0	0	0.33618	1	7806	7806		17.087	0	1	165790			9088	3675	5039	5039	11926	11926					0.03658562212990546
FLFYLLPM	8	Unmodified	_FLFYLLPM_					0	0	0		ENSG00000132911|ENST00000255262|NMUR2	ENSG00000132911|ENST00000255262|NMUR2	ENSG00000132911|ENST00000255262|NMUR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8139038085938	2	522.285357	1042.55616	0.39957	0.00020869	0.49338	0.00025768	0.89295	0.00046637	522.2852052219303	37.77	0.43612	37.868	37.628	38.064	0.097527					21	15	2	0	0	0	0.31651	1	7781	7781		24.21	7.1234	1	148000			9089	3675	5039	5039	11927	11927					0.03658562212990546
FLGAENAFNLF	11	Unmodified	_FLGAENAFNLF_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000538470.2_1_11:61067610-61070684:-|nuORF;nc|ENSG00000167986|Q16531-2|DDB1	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.811279296875	2	621.811313	1241.60807	0.50298	0.00031276	-0.54973	-0.00034183	-0.046747	-2.9068E-05	621.8110838878788	65.759	0.80987	65.759	65.373	66.183	0					64	28	3	0	0	0	0.26921	1	16455	16455		24.991	24.991	1	781160			9090	259	5040	5040	11928	11928					-0.003066028395323883
FLGAENAFNLF	11	Unmodified	_FLGAENAFNLF_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000538470.2_1_11:61067610-61070684:-|nuORF;nc|ENSG00000167986|Q16531-2|DDB1	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.811279296875	2	621.811313	1241.60807	0.079302	4.9311E-05	-0.19471	-0.00012107	-0.1154	-7.1759E-05	621.8114153345414	65.603	0.78949	65.692	65.408	66.197	0.088882					65	28	3	0	0	0	0.26921	1	16358	16358		24.991	24.991	1	916550			9091	259	5040	5040	11929	11929					-0.003066028395323883
FLGDVLGQQKI	11	Unmodified	_FLGDVLGQQKI_					0	0	0			REV__nc|ENSG00000106070|Q13322-3|GRB10	REV__nc|ENSG00000106070|Q13322-3|GRB10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8475952148438	2	609.348063	1216.68157	0.29326	0.0001787	0.21478	0.00013088	0.50805	0.00030958	609.8499173609466	81.368	0.51503	81.344	81.068	81.583	-0.02404					61	22	4	0	0	0	0.32951	1	21177	21177		8.7454	3.4485	1	252030	+		9092	14507	5041	5041	11930	11930					0.0818994560295323
FLGHRIIPI	9	Unmodified	_FLGHRIIPI_					0	0	0		ENST00000558588.5_1_15:40583969-40599873:-|nuORF;nc|ENSG00000137841|Q00722-3|PLCB2;nc|ENSG00000137841|Q00722-2|PLCB2;ENSG00000137841|ENST00000260402|PLCB2	ENST00000558588.5_1_15:40583969-40599873:-|nuORF	ENST00000558588.5_1_15:40583969-40599873:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.319580078125	2	533.332019	1064.64948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.292	1	88.292	87.792	88.792	0								0	0	0	0.24077	1	23317	23317		9.3474	2.9933	1				9093	4086	5042	5042	11931	11931					0.11974622710454241
FLGHRIIPI	9	Unmodified	_FLGHRIIPI_					0	0	0		ENST00000558588.5_1_15:40583969-40599873:-|nuORF;nc|ENSG00000137841|Q00722-3|PLCB2;nc|ENSG00000137841|Q00722-2|PLCB2;ENSG00000137841|ENST00000260402|PLCB2	ENST00000558588.5_1_15:40583969-40599873:-|nuORF	ENST00000558588.5_1_15:40583969-40599873:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.31982421875	2	533.332019	1064.64948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.21	1	88.299	87.799	88.799	0.089195								0	0	0	0.24077	1	23286	23286		9.3474	2.0582	1				9094	4086	5042	5042	11932	11932					0.11974622710454241
FLGLNRRAETL	11	Unmodified	_FLGLNRRAETL_					0	0	0			REV__ENSG00000112893|ENST00000261483|MAN2A1	REV__ENSG00000112893|ENST00000261483|MAN2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.58197021484375	3	430.582333	1288.72517	0.037848	1.6297E-05	-0.74314	-0.00031998	-0.70529	-0.00030369	430.5819213707132	32.004	0.9732	32.004	31.719	32.692	0					70	34	3	0	0	0	0.29518	1	6043	6043		14.171	0	1	1333900	+		9095	14791	5043	5043	11933	11933					0.09235555100099191
FLGSRLGN	8	Unmodified	_FLGSRLGN_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.2406921386719	2	432.240327	862.466101	-1.6784	-0.00072546	1.7897	0.00077357	0.11132	4.8117E-05	432.24100555174283	34.787	0.5745	34.863	34.576	35.151	0.075306					41	20	3	0	0	0	0.45431	1	6884	6884		4.3292	1.44	1	307200			9096	964	5044	5044	11934	11934					0.02936648928800878
FLGSRLGN	8	Unmodified	_FLGSRLGN_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	432.240327	862.466101	-0.8538	-0.00036905	1.0726	0.00046364	0.21884	9.4592E-05	432.24071961637816	34.706	0.64383	34.783	34.417	35.06	0.077377	-0.03985	-0.00022139	NaN	4.3292	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326260			9097	964	5044	5044							0.02936648928800878
FLGTRTGLSRI	11	Unmodified	_FLGTRTGLSRI_					0	0	0		nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;ENSG00000157445|ENST00000474759|CACNA2D3	nc|ENSG00000157445|Q8IZS8-2|CACNA2D3	nc|ENSG00000157445|Q8IZS8-2|CACNA2D3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.55645751953125	3	407.575178	1219.70371	0.056368	2.2974E-05	-0.63051	-0.00025698	-0.57414	-0.00023401	407.5747055419907	38.222	0.52435	38.313	37.959	38.483	0.090881					62	18	4	0	0	0	0.32736	1	7884	7884		6.6235	6.6235	1	813130			9098	5307	5045	5045	11935	11935					0.10264170071354783
FLGVTSTPRPV	11	Unmodified	_FLGVTSTPRPV_					0	0	0			REV__nc|ENSG00000124900|Q9BSJ1-2|TRIM51	REV__nc|ENSG00000124900|Q9BSJ1-2|TRIM51	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.834228515625	2	587.334956	1172.65536	0.37672	0.00022126	1.5496	0.00091011	1.9263	0.0011314	587.3362161829166	80.387	1.7882	80.36	79.228	81.017	-0.026825					86	67	2	0	0	0	0.33149	1	20783	20783		5.2969	0.39987	1	391350	+		9099	15252	5046	5046	11936	11936					0.07593676431451968
FLGYSVAVGEF	11	Unmodified	_FLGYSVAVGEF_					0	0	0		ENST00000592226.5_1_17:42458037-42462568:-|nuORF	ENST00000592226.5_1_17:42458037-42462568:-|nuORF	ENST00000592226.5_1_17:42458037-42462568:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8231811523438	2	594.800414	1187.58628	0.76411	0.00045449	2.7436	0.0016319	3.5078	0.0020864	594.802158196589	51.003	0.48442	51.003	50.738	51.222	0					37	17	3	0	0	0	0.3239	1	11798	11798		17.113	3.2068	1	297180			9100	12194	5047	5047	11937	11937					-1.4075880926611717E-05
FLHAVDVVL	9	Unmodified	_FLHAVDVVL_					0	0	0		ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1;nc|ENSG00000112763|Q7KYR7-5|BTN2A1;nc|ENSG00000112763|Q7KYR7-3|BTN2A1;ENST00000377600.6_1_6:26463094-26468774:+|nuORF	ENSG00000112763|ENST00000312541|BTN2A1	ENSG00000112763|ENST00000312541|BTN2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7945556640625	2	506.794935	1011.57532	0.29666	0.00015035	0.28026	0.00014203	0.57692	0.00029238	506.7949364824223	70.257	1.1662	70.323	69.856	71.022	0.066048					121	41	4	0	0	0	0.10075	1	17717	17717		38.151	2.107	1	1848800			9101	2460	5048	5048	11938	11938					0.06999234828288081
FLHKPAAQA	9	Unmodified	_FLHKPAAQA_					0	0	0			REV__nc|ENSG00000185513|Q9Y468-2|L3MBTL1	REV__nc|ENSG00000185513|Q9Y468-2|L3MBTL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.7762756347656	2	491.777077	981.5396	0.15446	7.5958E-05	-0.17514	-8.6131E-05	-0.020687	-1.0173E-05	491.77650303478106	67.005	0.96164	66.991	66.634	67.596	-0.013588					65	33	3	0	0	0	0.25314	1	16829	16829		15.847	0	1	361930	+		9102	18385	5049	5049	11939	11939					0.048091973712644176
FLHPQEPLHK	10	Unmodified	_FLHPQEPLHK_					0	0	0			REV__HIVEP2|p.K1731Ifs*8|1|0.06|ENSG00000010818|chr6:142768532-142768533|-/GAAAGCTGAAAGTAAA|frameshift_variant	REV__HIVEP2|p.K1731Ifs*8|1|0.06|ENSG00000010818|chr6:142768532-142768533|-/GAAAGCTGAAAGTAAA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.3394165039062	2	623.340572	1244.66659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.5	1	113.51	113.01	114.01	0.014824								0	0	0	0.37739	1	29529	29529		3.2813	1.6287	1		+		9103	13420	5050	5050	11940	11940					0.0540449852560414
FLHRHSEA	8	Unmodified	_FLHRHSEA_					0	0	0		ENST00000263269.3_1_19:48917790-48922905:+|nuORF	ENST00000263269.3_1_19:48917790-48922905:+|nuORF	ENST00000263269.3_1_19:48917790-48922905:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7716979980469	2	498.754133	995.493713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.582	1	16.52	16.02	17.02	-0.062534								0	0	0	0.36336	1	1370	1370		8.5933	0.43775	1				9104	9003	5051	5051	11941	11941					-0.004214478109702213
FLHTVQLSGQ	10	Unmodified	_FLHTVQLSGQ_					0	0	0			REV__ENST00000566333.1_1_16:82660697-83065865:+|nuORF	REV__ENST00000566333.1_1_16:82660697-83065865:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.3035278320312	2	565.303655	1128.59276	0.35596	0.00020123	-0.72155	-0.0004079	-0.36559	-0.00020667	565.3035123851456	53.216	0.58276	53.216	53.012	53.595	0					37	13	4	0	0	0	0.3156	1	12661	12661		10.824	2.2306	1	868930	+		9105	22367	5052	5052	11942	11942					0.03360530363283942
FLHTVTRTR	9	Unmodified	_FLHTVTRTR_					0	0	0		ENST00000311956.8_1_11:46700744-46700931:-|nuORF	ENST00000311956.8_1_11:46700744-46700931:-|nuORF	ENST00000311956.8_1_11:46700744-46700931:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.3035278320312	2	565.825089	1129.63563	0.38072	0.00021542	3.1636	0.00179	3.5443	0.0020055	566.3290372613369	53.37	0.65905	53.37	53.09	53.749	0					58	24	4	0	0	0	0.24913	1	12661	12661		12.532	0.89125	1	699970			9106	9321	5053	5053	11943	11943					0.07599345211360742
FLIRNNNTDL	10	Unmodified	_FLIRNNNTDL_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5643615722656	3	407.219172	1218.63569	0.3648	0.00014855	-0.28301	-0.00011525	0.081785	3.3304E-05	407.21902840675136	36.78	0.98576	36.873	36.377	37.363	0.093014					87	35	4	0	0	0	0.36002	1	7375	7375		6.1918	0.40842	1	396270			9107	6741	5054	5054	11944	11944					0.035113004207232734
FLKANTKAKVL	11	Unmodified	_FLKANTKAKVL_					0	0	0			REV__NRAP|p.S1061Mfs*12|1|0.15|ENSG00000197893|chr10:113614843-113614843|C/-|frameshift_variant	REV__NRAP|p.S1061Mfs*12|1|0.15|ENSG00000197893|chr10:113614843-113614843|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.8897094726562	2	616.889898	1231.76524	0.24059	0.00014842	-0.098955	-6.1044E-05	0.14164	8.7376E-05	616.8897967709348	58.133	0.40509	58.133	57.953	58.358	0					23	13	2	0	0	0	0.42762	1	14086	14086		7.609	0.50723	1	253700	+		9108	18780	5055	5055	11945	11945					0.15863101770651156
FLKANTKAKVL	11	Unmodified	_FLKANTKAKVL_					0	0	0			REV__NRAP|p.S1061Mfs*12|1|0.15|ENSG00000197893|chr10:113614843-113614843|C/-|frameshift_variant	REV__NRAP|p.S1061Mfs*12|1|0.15|ENSG00000197893|chr10:113614843-113614843|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	616.889898	1231.76524	0.38503	0.00023752	-0.51877	-0.00032003	-0.13375	-8.2507E-05	616.8898391569008	58.092	0.40135	58.075	57.874	58.275	-0.0172	-0.0051525	-0.00031009	NaN	7.609	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372540	+		9109	18780	5055	5055							0.15863101770651156
FLKESGSSVAF	11	Unmodified	_FLKESGSSVAF_					0	0	0			REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8131713867188	2	586.303321	1170.59209	0.78103	0.00045792	1.6923	0.0009922	2.4733	0.0014501	586.805709827801	78.196	0.48051	78.196	77.878	78.358	0					24	17	2	0	0	0	0.3259	1	20142	20142		13.906	4.5586	1	162470	+		9110	18821	5056	5056	11946	11946					0.013616909235679486
FLKESGSSVAF	11	Unmodified	_FLKESGSSVAF_					0	0	0			REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8135986328125	2	586.303321	1170.59209	0.81489	0.00047777	1.5384	0.00090197	2.3533	0.0013797	586.3039682215802	78.421	0.84461	78.39	77.87	78.715	-0.030434					52	31	3	0	0	0	0.3239	1	20294	20294		17.113	2.2746	1	191670	+		9111	18821	5056	5056	11947	11947					0.013616909235679486
FLKFFCMSF	9	Unmodified	_FLKFFCMSF_					0	0	0		ENSG00000176971|ENST00000318627|FIBIN	ENSG00000176971|ENST00000318627|FIBIN	ENSG00000176971|ENST00000318627|FIBIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8133544921875	2	585.279749	1168.54494	0.48497	0.00028384	-0.62522	-0.00036593	-0.14025	-8.2083E-05	585.27773927925	79.211	0.35402	79.211	79.057	79.411	0					26	14	3	0	0	0	0.25066	1	20522	20522		11.64	0	1	163770			9112	6952	5057	5057	11948	11948					-0.03258583152774008
FLKFNISLQK	10	Unmodified	_FLKFNISLQK_					0	0	0		ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8724975585938	2	619.368798	1236.72304	0.11984	7.4222E-05	1.672	0.0010356	1.7918	0.0011098	619.3707405203077	91.712	1.9109	91.803	91.166	93.077	0.090675					275	137	3	0	0	0	0.39935	1	24278	24278		3.5965	0.31518	1	768030			9113	8414	5058	5058	11949	11949					0.11415126362271621
FLKFPQIRWKI	11	Unmodified	_FLKFPQIRWKI_					0	0	0		nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.30792236328125	3	492.634368	1474.88128	0.24216	0.0001193	0.32377	0.0001595	0.56593	0.0002788	492.63440931720453	96.075	0.45741	96.153	95.972	96.43	0.077408					57	40	2	0	0	0	0.3333	1	25661	25661		1.3296	0.82369	1	173350			9114	12614	5059	5059	11950	11950					0.1628304534133349
FLKFPQIRWKI	11	Unmodified	_FLKFPQIRWKI_					0	0	0		nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.30804443359375	3	492.634368	1474.88128	0.38655	0.00019043	0.25109	0.0001237	0.63764	0.00031412	492.63434564744205	96.176	0.67068	96.172	95.799	96.47	-0.0038223					99	63	2	0	0	0	0.33346	1	25706	25706		0.50596	0	1	163990			9115	12614	5059	5059	11951	11951					0.1628304534133349
FLKGSRGFSEC	11	Unmodified	_FLKGSRGFSEC_					0	0	0		ENST00000382788.7_1_4:3433259-3433343:+|nuORF	ENST00000382788.7_1_4:3433259-3433343:+|nuORF	ENST00000382788.7_1_4:3433259-3433343:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.86895751953125	3	410.869374	1229.58629	-0.20805	-8.5481E-05	-0.089217	-3.6656E-05	-0.29727	-0.00012214	410.8692846216515	14.053	0.6047	13.948	13.763	14.368	-0.10466					53	20	4	0	0	0	0.47742	1	606	606		0.36667	0.13083	1	374900			9116	10012	5060	5060	11952	11952					-0.01931730859723757
FLKGSRGFSEC	11	Unmodified	_FLKGSRGFSEC_					0	0	0		ENST00000382788.7_1_4:3433259-3433343:+|nuORF	ENST00000382788.7_1_4:3433259-3433343:+|nuORF	ENST00000382788.7_1_4:3433259-3433343:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8689880371094	3	410.869374	1229.58629	-0.22794	-9.3655E-05	-0.22874	-9.3983E-05	-0.45669	-0.00018764	410.86922746786075	14.011	0.42879	13.945	13.802	14.231	-0.066068					39	14	4	0	0	0	0.47742	1	595	595		0.36667	0	1	396680			9117	10012	5060	5060	11953	11953					-0.01931730859723757
FLKTFSPDVF	10	Unmodified	_FLKTFSPDVF_					0	0	0		ENST00000537802.5_1_13:111301459-111315833:-|nuORF;ENST00000545506.5_1_13:111299446-111317899:-|nuORF;ENST00000539405.1_1_13:111303270-111319801:-|nuORF;ENST00000540006.5_1_13:111296932-111315941:-|nuORF;ENST00000535398.5_1_13:111298395-111353838:-|nuORF;ENSG00000134905|ENST00000257347|CARS2;ENST00000537404.1_1_13:111299446-111303474:-|nuORF	ENST00000537802.5_1_13:111301459-111315833:-|nuORF	ENST00000537802.5_1_13:111301459-111315833:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.800048828125	2	600.818607	1199.62266	0.42533	0.00025555	-0.74523	-0.00044775	-0.31989	-0.0001922	600.817965004234	76.275	0.54514	76.243	75.992	76.537	-0.031487					51	19	3	0	0	0	0.34795	1	19686	19686		13.042	4.2971	1	639360			9118	3828	5061	5061	11954	11954					0.03083469308603526
FLKTQQQIFQ	10	Unmodified	_FLKTQQQIFQ_					0	0	0			REV__ENSG00000136152|ENST00000349995|COG3	REV__ENSG00000136152|ENST00000349995|COG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8430786132812	2	640.853512	1279.69247	0.29912	0.00019169	1.4976	0.00095975	1.7967	0.0011514	640.854429568829	59.214	0.56674	59.214	58.941	59.508	0					47	19	3	0	0	0	0.36786	1	14442	14442		9.3831	1.2276	1	440910	+		9119	15793	5062	5062	11955	11955					0.06381347977230689
FLKTQQQIFQ	10	Unmodified	_FLKTQQQIFQ_					0	0	0			REV__ENSG00000136152|ENST00000349995|COG3	REV__ENSG00000136152|ENST00000349995|COG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8430786132812	2	640.853512	1279.69247	0.49044	0.0003143	1.2069	0.00077344	1.6973	0.0010877	640.854281084999	59.063	0.55841	59.154	58.902	59.46	0.091305					50	19	4	0	0	0	0.34325	1	14381	14381		13.906	3.1065	1	443070	+		9120	15793	5062	5062	11956	11956					0.06381347977230689
FLLATEVVTVF	11	Unmodified	_FLLATEVVTVF_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5726318359375	3	413.572552	1237.69583	0.16955	7.0121E-05	0.072982	3.0183E-05	0.24253	0.0001003	413.5726237152483	28.645	1.3973	28.641	28.306	29.703	-0.0042572					120	48	4	0	0	0	0.30475	2	5030	5030;5079		21.799	8.2808	1	2000100			9121	1286	5063	5063	11957;11958	11957					0.08648598031209076
FLLDANPQFH	10	Unmodified	_FLLDANPQFH_					0	0	0			REV__nc|ENSG00000130475|O14526-3|FCHO1	REV__nc|ENSG00000130475|O14526-3|FCHO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.806640625	2	601.303655	1200.59276	0.48188	0.00028976	0.17518	0.00010534	0.65707	0.0003951	601.8068602004932	79.828	0.28521	79.828	79.612	79.897	0					13	10	2	0	0	0	0.38773	1	20678	20678		5.7319	1.4026	1	57864	+		9122	15457	5064	5064	11959	11959					0.00048530363278587174
FLLDANPQFH	10	Unmodified	_FLLDANPQFH_					0	0	0			REV__nc|ENSG00000130475|O14526-3|FCHO1	REV__nc|ENSG00000130475|O14526-3|FCHO1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	601.303655	1200.59276	0.48188	0.00028976	0.17518	0.00010534	0.65707	0.0003951	601.8068602004932	79.828	0.28521	79.828	79.612	79.897	0	-2.9079E-05	0.00033929	NaN	5.7319	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57864	+		9123	15457	5064	5064							0.00048530363278587174
FLLDANPQFH	10	Unmodified	_FLLDANPQFH_					0	0	0			REV__nc|ENSG00000130475|O14526-3|FCHO1	REV__nc|ENSG00000130475|O14526-3|FCHO1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	601.303655	1200.59276	0.39512	0.00023758	-0.39222	-0.00023584	0.0028951	1.7408E-06	601.3013499105627	79.857	0.4748	79.828	79.696	80.171	-0.028923	2.9079E-05	-0.00034307	NaN	5.7319	19	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88502	+		9124	15457	5064	5064							0.00048530363278587174
FLLFGIVYF	9	Unmodified	_FLLFGIVYF_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8035278320312	2	559.817879	1117.6212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.618	1	45.618	45.118	46.118	0								0	0	0	0.22457	1	10211	10211		14.582	2.341	1		+		9125	14777	5065	5065	11960	11960					0.06709880010498637
FLLFPDMEA	9	Oxidation (M)	_FLLFPDM(Oxidation (M))EA_		FLLFPDM(1)EA		FLLFPDM(74)EA	0	0	1		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7623291015625	2	549.762443	1097.51033	0.37281	0.00020496	-0.44345	-0.00024379	-0.070641	-3.8836E-05	549.7620447811747	80.781	1.169	80.781	80.389	81.558	0					178	52	5	0	0	0	0.013258	2	21003	20949;21003		74.423	49.749	1	831670			9126	6717	5066	5066	11961;11962	11962		768			-0.03452127759874202
FLLFPDMEA	9	Oxidation (M)	_FLLFPDM(Oxidation (M))EA_		FLLFPDM(1)EA		FLLFPDM(82)EA	0	0	1		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7628173828125	2	549.762443	1097.51033	0.28667	0.0001576	-0.26001	-0.00014294	0.026661	1.4657E-05	549.7620088940947	80.698	1.6438	80.763	80.055	81.699	0.065102					147	72	3	0	0	0	0.0085732	3	20910	20905;20910;20957		81.613	58.465	1	816290			9127	6717	5066	5066	11963;11964;11965	11964		768			-0.03452127759874202
FLLFPDMEA	9	Oxidation (M)	_FLLFPDM(Oxidation (M))EA_		FLLFPDM(1)EA		FLLFPDM(67)EA	0	0	1		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7623291015625	2	549.762443	1097.51033	0.44387	0.00024403	-0.63713	-0.00035027	-0.19326	-0.00010624	549.7617684111808	80.791	1.6549	80.764	80.173	81.828	-0.026825					135	67	3	0	0	0	0.017871	1	20945	20945		67.344	49.209	1	753890			9128	6717	5066	5066	11966	11966		768			-0.03452127759874202
FLLHELDILK	10	Unmodified	_FLLHELDILK_					0	0	0			REV__ENSG00000163961|ENST00000318037|RNF168	REV__ENSG00000163961|ENST00000318037|RNF168	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.866455078125	2	620.868631	1239.72271	0.23621	0.00014665	-2.7961	-0.001736	-2.5599	-0.0015893	620.8669743976437	32.01	0.8359	32.051	31.89	32.726	0.040989					57	29	3	0	0	0	0.27059	1	6094	6094		24.021	0.23079	1	409440	+		9129	17111	5067	5067	11967	11967					0.11243706642426332
FLLIFTLKKE	10	Unmodified	_FLLIFTLKKE_					0	0	0			REV__ENST00000379619.5_1_2:28639168-28639276:+|nuORF	REV__ENST00000379619.5_1_2:28639168-28639276:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.3901977539062	2	626.389199	1250.76385	-0.032207	-2.0174E-05	-1.0961	-0.00068658	-1.1283	-0.00070675	626.8890891225356	103.62	0.66187	103.62	103.51	104.17	0					151	92	2	0	0	0	0.39935	1	27509	27509		3.5965	0.60125	1	22132000	+		9130	20537	5068	5068	11968	11968					0.14849467681915485
FLLIHMLV	8	Unmodified	_FLLIHMLV_					0	0	0			REV__ENST00000461125.1_1_3:179304300-179305795:+|nuORF	REV__ENST00000461125.1_1_3:179304300-179305795:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7346496582031	2	493.298799	984.583045	0.48734	0.0002404	-2.4407	-0.001204	-1.9533	-0.00096358	493.29777684712394	72.8	0.75925	72.8	72.374	73.133	0					45	27	2	0	0	0	0.29242	1	18533	18533		24.21	7.1234	1	223860	+		9131	21213	5069	5069	11969	11969					0.09013670824185738
FLLLKYRWQ	9	Unmodified	_FLLLKYRWQ_					0	0	0			REV__ENSG00000177807|ENST00000644903|KCNJ10	REV__ENSG00000177807|ENST00000644903|KCNJ10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.87255859375	2	633.871508	1265.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.97	1	113.95	113.45	114.45	-0.019096								0	0	0	0.2672	1	29610	29610		0.52476	0.066424	1		+		9132	18004	5070	5070	11970	11970					0.10622849944729751
FLLPFLSYH	9	Unmodified	_FLLPFLSYH_					0	0	0			REV__nc|ENSG00000159063|Q9BVK2-2|ALG8	REV__nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.277099609375	2	568.810585	1135.60662	0.33477	0.00019042	-2.3003	-0.0013084	-1.9655	-0.001118	568.8093069011244	76.801	1.3449	76.801	76.049	77.394	0					101	48	4	0	0	0	0.22596	1	19801	19801		21.747	3.6117	1	599760	+		9133	16831	5071	5071	11971	11971					0.04423807862394824
FLLQPWLD	8	Unmodified	_FLLQPWLD_					0	0	0		ENST00000592670.5_1_17:40907004-40907160:-|nuORF	ENST00000592670.5_1_17:40907004-40907160:-|nuORF	ENST00000592670.5_1_17:40907004-40907160:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.8005981445312	2	516.28166	1030.54877	0.3599	0.00018581	0.14736	7.6077E-05	0.50726	0.00026189	516.2814934242318	58.081	0.61465	58.081	57.854	58.468	0					45	21	3	0	0	0	0.32886	1	13999	13999		21.747	0	1	652440			9134	12200	5072	5072	11972	11972					0.03471545936940856
FLLQPWLD	8	Unmodified	_FLLQPWLD_					0	0	0		ENST00000592670.5_1_17:40907004-40907160:-|nuORF	ENST00000592670.5_1_17:40907004-40907160:-|nuORF	ENST00000592670.5_1_17:40907004-40907160:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	516.28166	1030.54877	0.31363	0.00016192	-1.8255	-0.00094246	-1.5119	-0.00078054	516.2804896291573	58.367	0.16342	58.458	58.366	58.529	0.090714	0.18871	-0.0018655	NaN	21.747	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102360			9135	12200	5072	5072							0.03471545936940856
FLLRFFFV	8	Unmodified	_FLLRFFFV_					0	0	0			REV__ENST00000336440.3_1_14:69259862-69260099:-|nuORF	REV__ENST00000336440.3_1_14:69259862-69260099:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.272216796875	2	544.818213	1087.62187	0.56706	0.00030895	1.766	0.00096213	2.333	0.0012711	544.81989264066	49.282	0.27874	49.327	49.21	49.489	0.044891					14	9	2	0	0	0	0.34092	1	11337	11337		8.5933	0	1	118460	+		9136	20072	5073	5073	11973	11973					0.08156719450244054
FLLRKTKEFV	10	Unmodified	_FLLRKTKEFV_					0	0	0			REV__ENSG00000184990|ENST00000329967|SIVA1	REV__ENSG00000184990|ENST00000329967|SIVA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.89013671875	2	640.889898	1279.76524	0.35656	0.00022852	-0.086906	-5.5697E-05	0.26966	0.00017282	640.8897064731815	74.061	0.64688	74.061	73.86	74.507	0					50	21	3	0	0	0	0.38233	1	19036	19036		6.7232	1.8262	1	1666800	+		9137	18345	5074	5074	11974	11974					0.13655101770632427
FLLRKTKEFV	10	Unmodified	_FLLRKTKEFV_					0	0	0			REV__ENSG00000184990|ENST00000329967|SIVA1	REV__ENSG00000184990|ENST00000329967|SIVA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.8904418945312	2	640.889898	1279.76524	0.51219	0.00032826	-0.25882	-0.00016588	0.25337	0.00016238	640.8896185179109	74.167	0.61861	74.136	73.91	74.529	-0.030663					47	21	3	0	0	0	0.38233	1	19045	19045		6.7232	0.99131	1	1772400	+		9138	18345	5074	5074	11975	11975					0.13655101770632427
FLLRQCLRSL	10	Unmodified	_FLLRQCLRSL_					0	0	0		ENSG00000115085|ENST00000264972|ZAP70;ENST00000483781.5_1_2:98330105-98349944:+|nuORF	ENSG00000115085|ENST00000264972|ZAP70	ENSG00000115085|ENST00000264972|ZAP70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9136657714844	3	416.913025	1247.71725	0.46661	0.00019453	0.98788	0.00041186	1.4545	0.0006064	416.9133734557238	20.919	0.96698	20.809	20.581	21.548	-0.11003					59	33	2	0	0	0	0.40854	1	2766	2766		1.9064	0.1641	1	139940			9139	2605	5075	5075	11976	11976					0.1032970457895317
FLLSHLSLI	9	Unmodified	_FLLSHLSLI_					0	0	0		ENSG00000175143|ENST00000642005|OR2T1;nc|ENSG00000175143|O43869|OR2T1	ENSG00000175143|ENST00000642005|OR2T1	ENSG00000175143|ENST00000642005|OR2T1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2904052734375	2	521.81841	1041.62227	0.58689	0.00030625	-0.65922	-0.00034399	-0.072336	-3.7746E-05	521.8180786020959	63.752	0.8806	63.743	63.297	64.178	-0.0089188					48	31	2	0	0	0	0.24913	1	15799	15799		7.9102	0.62092	1	272580			9140	6841	5076	5076	11977	11977					0.10312094379423797
FLLTPHPHF	9	Unmodified	_FLLTPHPHF_					0	0	0		ENST00000607074.1_1_6:170581575-170581749:+|nuORF	ENST00000607074.1_1_6:170581575-170581749:+|nuORF	ENST00000607074.1_1_6:170581575-170581749:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.2991333007812	2	554.800552	1107.58655	0.19285	0.00010699	-0.68621	-0.00038071	-0.49335	-0.00027371	554.801841669745	93.774	0.44556	93.774	93.641	94.087	0					40	30	2	0	0	0	0.25291	1	25014	25014		9.3474	2.9933	1	65203			9141	12307	5077	5077	11978	11978					0.037060569224195206
FLLTPHPHF	9	Unmodified	_FLLTPHPHF_					0	0	0		ENST00000607074.1_1_6:170581575-170581749:+|nuORF	ENST00000607074.1_1_6:170581575-170581749:+|nuORF	ENST00000607074.1_1_6:170581575-170581749:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	554.800552	1107.58655	0.3818	0.00021182	-0.12707	-7.0496E-05	0.25474	0.00014133	554.8019927869149	93.709	0.38165	93.708	93.499	93.881	-0.00051117	-0.033113	0.00033552	NaN	9.3474	40	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60240			9142	12307	5077	5077							0.037060569224195206
FLLVRDRYF	9	Unmodified	_FLLVRDRYF_					0	0	0			REV__ENST00000489376.1_1_19:58267044-58268416:+|nuORF	REV__ENST00000489376.1_1_19:58267044-58268416:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.3618774414062	2	614.84549	1227.67643	0.097445	5.9914E-05	-0.25267	-0.00015535	-0.15522	-9.5439E-05	614.8454233585197	26.405	0.59806	26.405	26.161	26.759	0					38	20	2	0	0	0	0.2615	1	4432	4432		0.45834	0	1	141410	+		9143	21590	5078	5078	11979	11979					0.07169686530983199
FLLVRDRYF	9	Unmodified	_FLLVRDRYF_					0	0	0			REV__ENST00000489376.1_1_19:58267044-58268416:+|nuORF	REV__ENST00000489376.1_1_19:58267044-58268416:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	614.84549	1227.67643	0.093257	5.7339E-05	0.044328	2.7255E-05	0.13759	8.4594E-05	614.8453336646525	26.553	0.59186	26.515	26.1	26.692	-0.038671	0.042604	0.00033607	NaN	12.241	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153870	+		9144	21590	5078	5078							0.07169686530983199
FLLVRDRYF	9	Unmodified	_FLLVRDRYF_					0	0	0			REV__ENST00000489376.1_1_19:58267044-58268416:+|nuORF	REV__ENST00000489376.1_1_19:58267044-58268416:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	614.84549	1227.67643	0.33954	0.00020877	-0.4179	-0.00025694	-0.078357	-4.8178E-05	614.8451434657418	26.518	0.62779	26.496	26.158	26.786	-0.022238	0.024094	-0.00023232	NaN	12.241	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165050	+		9145	21590	5078	5078							0.07169686530983199
FLLYKRCLCL	10	Unmodified	_FLLYKRCLCL_					0	0	0		ENST00000340857.3_1_22:38202960-38203092:+|nuORF	ENST00000340857.3_1_22:38202960-38203092:+|nuORF	ENST00000340857.3_1_22:38202960-38203092:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.5714111328125	3	424.571612	1270.69301	-0.091175	-3.871E-05	-0.31854	-0.00013524	-0.40971	-0.00017395	424.57155570317303	43.901	1.9834	43.901	43.602	45.586	0					165	72	4	0	0	0	0.36698	1	9767	9767		9.544	0.56773	1	8478000			9146	9519	5079	5079	11980	11980					0.06848728101067536
FLLYKRCLCL	10	Unmodified	_FLLYKRCLCL_					0	0	0		ENST00000340857.3_1_22:38202960-38203092:+|nuORF	ENST00000340857.3_1_22:38202960-38203092:+|nuORF	ENST00000340857.3_1_22:38202960-38203092:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.920166015625	3	424.571612	1270.69301	0.3046	0.00012932	-0.35042	-0.00014878	-0.045818	-1.9453E-05	424.57144495085925	45.714	0.16032	45.714	45.586	45.746	0					9	5	2	0	0	0	0.34483	1	10244	10244		13.615	0	1	166070			9147	9519	5079	5079	11981	11981					0.06848728101067536
FLMGPVPDECS	11	Unmodified	_FLMGPVPDECS_					0	0	0			REV__ENSG00000178974|ENST00000313833|FBXO34	REV__ENSG00000178974|ENST00000313833|FBXO34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.7620849609375	2	597.762117	1193.50968	0.42147	0.00025194	-0.57963	-0.00034648	-0.15816	-9.4545E-05	597.7620563814374	73.878	1.178	73.93	73.604	74.782	0.052368					63	40	2	0	0	0	0.37965	1	18870	18870		13.906	1.3745	1	955990	+		9148	18052	5080	5080	11982	11982					-0.07933290471237342
FLNTDPSIV	9	Unmodified	_FLNTDPSIV_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000447760.1_1_2:106986223-106992976:+|nuORF;ENST00000426186.1_3_2:87098444-87121919:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1;ENST00000426186.1_3_2:87098444-87121919:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.5932922363281	2	503.266207	1004.51786	0.33046	0.00016631	0.62463	0.00031436	0.95509	0.00048066	503.26635270532	58.999	0.55874	59.091	58.875	59.434	0.091301					36	19	2	0	0	0	0.25066	1	14274	14274		11.64	1.4569	1	505310			9149	5060;10417	5081	5081	11983	11983					0.015783478320372524
FLNVHEGP	8	Unmodified	_FLNVHEGP_					0	0	0		nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7486572265625	2	456.732335	911.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.906	1	17.789	17.289	18.289	-0.11739								0	0	0	0.36336	1	1773	1773		8.5933	0.68312	1				9150	2161	5082	5082	11984	11984					-0.009150573081001312
FLPASTKLNL	10	Unmodified	_FLPASTKLNL_					0	0	0		nc|ENSG00000132749|Q9Y4I5-2|TESMIN;ENSG00000132749|ENST00000255087|TESMIN	nc|ENSG00000132749|Q9Y4I5-2|TESMIN	nc|ENSG00000132749|Q9Y4I5-2|TESMIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2578735351562	2	552.326599	1102.63865	0.43149	0.00023832	-0.094524	-5.2208E-05	0.33696	0.00018611	552.3264487906465	71.611	0.62506	71.668	71.459	72.084	0.05658					34	22	2	0	0	0	0.30978	1	18186	18186		19.362	7.1213	1	165240			9151	3663	5083	5083	11985	11985					0.09143175545523263
FLPDISQSF	9	Unmodified	_FLPDISQSF_					0	0	0		ENST00000513040.5_2_5:125695875-125801126:+|nuORF	ENST00000513040.5_2_5:125695875-125801126:+|nuORF	ENST00000513040.5_2_5:125695875-125801126:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3447875976562	2	527.266207	1052.51786	0.52244	0.00027547	-0.678	-0.00035749	-0.15556	-8.2023E-05	527.2659428103487	75.849	0.24111	75.817	75.588	75.829	-0.031487					13	8	2	0	0	0	0.23235	1	19432	19432		21.537	4.4241	1	151110			9152	11401	5084	5084	11986	11986					-0.006296521679587386
FLPDISQSF	9	Unmodified	_FLPDISQSF_					0	0	0		ENST00000513040.5_2_5:125695875-125801126:+|nuORF	ENST00000513040.5_2_5:125695875-125801126:+|nuORF	ENST00000513040.5_2_5:125695875-125801126:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	527.266207	1052.51786	0.41178	0.00021712	-0.39983	-0.00021081	0.011952	6.3021E-06	527.2661604667691	75.742	0.27092	75.794	75.618	75.889	0.052361	-0.011707	0.00010713	NaN	21.537	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96897			9153	11401	5084	5084							-0.006296521679587386
FLPEHLDF	8	Unmodified	_FLPEHLDF_					0	0	0			REV__nc|ENSG00000126822|A1L390-2|PLEKHG3	REV__nc|ENSG00000126822|A1L390-2|PLEKHG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2558288574219	2	509.255643	1016.49673	0.33632	0.00017127	-0.17536	-8.9305E-05	0.16095	8.1966E-05	509.2554240799083	58.654	0.93302	58.746	58.418	59.351	0.091301					71	32	4	0	0	0	0.421	1	14199	14199		15.768	1.1865	1	1161600	+		9154	15325	5085	5085	11987	11987					-0.010856174768150595
FLPFLHYPL	9	Unmodified	_FLPFLHYPL_					0	0	0		ENST00000508262.2_2_4:86938383-87019884:-|nuORF	ENST00000508262.2_2_4:86938383-87019884:-|nuORF	ENST00000508262.2_2_4:86938383-87019884:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.7605590820312	2	573.820953	1145.62735	0.41099	0.00023583	-0.51191	-0.00029374	-0.10092	-5.791E-05	573.8206613881832	44.921	0.68544	44.921	44.581	45.266	0					58	22	3	0	0	0	0.25291	1	10001	10001		9.3474	9.3474	1	536520			9155	11348	5086	5086	11988	11988					0.060363982420540196
FLPFLHYPL	9	Unmodified	_FLPFLHYPL_					0	0	0		ENST00000508262.2_2_4:86938383-87019884:-|nuORF	ENST00000508262.2_2_4:86938383-87019884:-|nuORF	ENST00000508262.2_2_4:86938383-87019884:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	573.820953	1145.62735	0.46406	0.00026629	-0.83238	-0.00047764	-0.36831	-0.00021135	573.8207016558043	44.706	0.61073	44.775	44.54	45.15	0.068569	-0.055661	-0.00027437	NaN	5.2307	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	575210			9156	11348	5086	5086							0.060363982420540196
FLPGARRPVL	10	Unmodified	_FLPGARRPVL_					0	0	0		ENST00000530934.5_1_11:67160948-67163588:+|nuORF	ENST00000530934.5_1_11:67160948-67163588:+|nuORF	ENST00000530934.5_1_11:67160948-67163588:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3272705078125	2	563.3482	1124.68185	0.55195	0.00031094	-0.067018	-3.7755E-05	0.48493	0.00027319	563.3480353789134	52.709	0.24989	52.759	52.657	52.907	0.050575					11	8	2	0	0	0	0.31165	1	12423	12423		15.847	4.2069	1	130930			9157	11621	5087	5087	11989	11989					0.12449410113458725
FLPGARRPVL	10	Unmodified	_FLPGARRPVL_					0	0	0		ENST00000530934.5_1_11:67160948-67163588:+|nuORF	ENST00000530934.5_1_11:67160948-67163588:+|nuORF	ENST00000530934.5_1_11:67160948-67163588:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	563.3482	1124.68185	0.26155	0.00014734	-0.15028	-8.4663E-05	0.11126	6.2678E-05	563.3481950898115	52.913	0.34778	52.904	52.708	53.056	-0.0096054	0.072292	-2.3734E-05	NaN	15.847	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134140			9158	11621	5087	5087							0.12449410113458725
FLPHCHLIF	9	Unmodified	_FLPHCHLIF_					0	0	0			REV__ENST00000264025.7_1_11:119533142-119533592:-|nuORF	REV__ENST00000264025.7_1_11:119533142-119533592:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.2681274414062	2	563.796955	1125.57936	0.29372	0.0001656	2.6679	0.0015041	2.9616	0.0016697	563.7985116809062	69.312	0.56877	69.378	69.123	69.692	0.066048					30	19	2	0	0	0	0.22431	1	17467	17467		20.871	6.2895	1	130950	+		9159	19633	5088	5088	11990	11990					0.021590010503359736
FLPHCHLIF	9	Unmodified	_FLPHCHLIF_					0	0	0			REV__ENST00000264025.7_1_11:119533142-119533592:-|nuORF	REV__ENST00000264025.7_1_11:119533142-119533592:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	563.796955	1125.57936	0.16069	9.0599E-05	2.7455	0.0015479	2.9062	0.0016385	563.7984315934073	69.408	0.74475	69.385	69.059	69.804	-0.022087	0.0086801	8.0608E-05	NaN	20.871	40	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167160	+		9160	19633	5088	5088							0.021590010503359736
FLPLIEPKRE	10	Unmodified	_FLPLIEPKRE_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.2096252441406	3	414.579929	1240.71796	-0.17376	-7.2037E-05	3.5097	0.0014551	3.336	0.001383	414.9152341820984	26.084	0.51474	26.084	25.925	26.44	0					25	17	2	0	0	0	0.32015	1	4340	4340		5.0475	3.9761	1	97626	+		9161	18498	5089	5089	11991	11991					0.10722822499656104
FLPPYTFQI	9	Unmodified	_FLPPYTFQI_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.3514404296875	2	563.302593	1124.59063	0.45573	0.00025671	-0.047132	-2.655E-05	0.40859	0.00023016	563.3038536251972	85.763	1.112	85.754	85.17	86.283	-0.0090027					74	41	3	0	0	0	0.08298	1	22493	22493		60.074	33.19	1	146610			9162	525	5090	5090	11992	11992					0.03332101625483119
FLQDLMAVI	9	Unmodified	_FLQDLMAVI_					0	0	0		ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36	ENSG00000163482|ENST00000295709|STK36	ENSG00000163482|ENST00000295709|STK36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2740478515625	2	525.288628	1048.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.963	1	70.029	69.529	70.529	0.066048								0	0	0	0.21673	1	17702	17702		17.113	2.2746	1				9163	5687	5091	5091	11993	11993					0.04036455373716308
FLQKPLID	8	Unmodified	_FLQKPLID_					0	0	0			REV__ENSG00000171492|ENST00000337338|LRRC8D	REV__ENSG00000171492|ENST00000337338|LRRC8D	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2896423339844	2	487.289485	972.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.892	1	70.953	70.453	71.453	0.060783								0	0	0	0.33941	1	17985	17985		19.439	2.4967	1		+		9164	17642	5092	5092	11994	11994					0.07703832454001258
FLQLKMVL	8	Unmodified	_FLQLKMVL_					0	0	0			REV__ENSG00000168434|ENST00000307149|COG7	REV__ENSG00000168434|ENST00000307149|COG7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3041076660156	2	496.304081	990.59361	0.356	0.00017669	-0.097131	-4.8207E-05	0.25887	0.00012848	496.303888308668	73.998	3.3109	74.051	73.17	76.481	0.052361					303	118	4	0	0	0	0.45851	1	18739	18739		2.8892	0	1	3943000	+		9165	17459	5093	5093	11995	11995					0.0979365347861858
FLQNKPHR	8	Unmodified	_FLQNKPHR_					0	0	0		ENST00000155926.8_1_2:12857176-12857593:+|nuORF	ENST00000155926.8_1_2:12857176-12857593:+|nuORF	ENST00000155926.8_1_2:12857176-12857593:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.284423828125	2	520.293425	1038.5723	0.57048	0.00029682	-0.17309	-9.0057E-05	0.3974	0.00020676	520.7946587511445	78.796	0.70899	78.854	78.47	79.179	0.058151					60	28	3	0	0	0	0.4397	1	20416	20416		9.3474	9.3474	1	234980			9166	8779	5094	5094	11996	11996					0.054554044941369284
FLQNKPHR	8	Unmodified	_FLQNKPHR_					0	0	0		ENST00000155926.8_1_2:12857176-12857593:+|nuORF	ENST00000155926.8_1_2:12857176-12857593:+|nuORF	ENST00000155926.8_1_2:12857176-12857593:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	520.293425	1038.5723	0.68316	0.00035544	-0.17328	-9.0158E-05	0.50988	0.00026528	520.2934128331822	78.864	0.76746	78.864	78.462	79.23	0	0.0085974	2.5227E-05	NaN	9.3474	70	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325440			9167	8779	5094	5094							0.054554044941369284
FLQNKPHR	8	Unmodified	_FLQNKPHR_					0	0	0		ENST00000155926.8_1_2:12857176-12857593:+|nuORF	ENST00000155926.8_1_2:12857176-12857593:+|nuORF	ENST00000155926.8_1_2:12857176-12857593:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	520.293425	1038.5723	0.69487	0.00036153	-0.28548	-0.00014853	0.40938	0.000213	520.7947766600638	78.879	0.70073	78.849	78.48	79.181	-0.030426	-0.0068833	-9.1526E-05	NaN	9.3474	64	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290860			9168	8779	5094	5094							0.054554044941369284
FLQRYYQVV	9	Unmodified	_FLQRYYQVV_					0	0	0		nc|ENSG00000241553|P59998-2|ARPC4;nc|ENSG00000214021|Q9Y4R7-2|TTLL3;ENST00000427220.5_1_3:9860474-9876502:+|nuORF;ENST00000602338.1_1_3:9862204-9862426:+|nuORF;ENST00000496526.5_1_3:9862204-9870005:+|nuORF;nc|ENSG00000214021|Q9Y4R7-5|TTLL3;nc|ENSG00000214021|Q9Y4R7|TTLL3;ENSG00000214021|ENST00000685419|TTLL3	nc|ENSG00000241553|P59998-2|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.2315673828125	3	405.888874	1214.64479	-0.1942	-7.8822E-05	-0.094515	-3.8363E-05	-0.28871	-0.00011718	405.8887865747341	51.765	0.59138	51.775	51.612	52.204	0.0095634					37	21	2	0	0	0	0.27726	1	12189	12189		12.241	0.06591	1	538180			9169	12965	5095	5095	11997	11997					0.046056937770117656
FLRDLRENYRL	11	Unmodified	_FLRDLRENYRL_					0	0	0			REV__ENSG00000132801|ENST00000255152|ZSWIM3	REV__ENSG00000132801|ENST00000255152|ZSWIM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.28759765625	3	498.944042	1493.8103	0.60478	0.00030175	-1.8175	-0.00090684	-1.2127	-0.00060509	498.9427972053547	44.935	0.54073	44.935	44.605	45.146	0					40	19	3	0	0	0	0.33223	1	9935	9935		5.1984	0.79229	1	262860	+		9170	15589	5096	5096	11998	11998					0.08314300565893973
FLRFCEMLI	9	Unmodified	_FLRFCEMLI_					0	0	0		ENSG00000158411|ENST00000289359|MITD1;ENST00000464685.1_1_2:99785961-99787892:-|nuORF	ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135986328125	2	586.303755	1170.59296	0.59374	0.00034811	1.1717	0.00068696	1.7654	0.0010351	586.3043230675818	78.006	0.75972	78.064	77.795	78.554	0.058151					47	27	3	0	0	0	0.23783	1	20209	20209		18.135	1.0221	1	184380			9171	5354	5097	5097	11999	11999					0.014484907672795089
FLRGHVLLSQL	11	Unmodified	_FLRGHVLLSQL_					0	0	0		ENST00000251849.8_1_3:12625127-12625511:-|nuORF	ENST00000251849.8_1_3:12625127-12625511:-|nuORF	ENST00000251849.8_1_3:12625127-12625511:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8825073242188	2	641.885147	1281.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.68	1	94.68	94.18	95.18	0								0	0	0	0.38137	1	25258	25258		1.0715	0	1				9172	8910	5098	5098	12000	12000					0.12613333485114708
FLRGHVLLSQL	11	Unmodified	_FLRGHVLLSQL_					0	0	0		ENST00000251849.8_1_3:12625127-12625511:-|nuORF	ENST00000251849.8_1_3:12625127-12625511:-|nuORF	ENST00000251849.8_1_3:12625127-12625511:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8826293945312	2	641.885147	1281.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.71	1	101.71	101.21	102.21	0								0	0	0	0.38126	1	27111	27111		1.1933	0.23107	1				9173	8910	5098	5098	12001	12001					0.12613333485114708
FLRGIRHYF	9	Unmodified	_FLRGIRHYF_					0	0	0			REV__ENST00000577255.1_1_18:24039580-24056655:-|nuORF	REV__ENST00000577255.1_1_18:24039580-24056655:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.8377685546875	2	604.838	1207.66145	0.4007	0.00024236	-0.3519	-0.00021284	0.048802	2.9517E-05	604.837902062217	23.563	0.56535	23.491	23.34	23.905	-0.072559					32	19	3	0	0	0	0.35563	1	3538	3538		0.52476	0	1	84745	+		9174	22459	5099	5099	12002	12002					0.065922394536301
FLRGPGADF	9	Unmodified	_FLRGPGADF_					0	0	0		ENST00000563518.5_1_15:41799618-41799735:-|nuORF	ENST00000563518.5_1_15:41799618-41799735:-|nuORF	ENST00000563518.5_1_15:41799618-41799735:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2764892578125	2	490.253434	978.492316	0.19267	9.4457E-05	0.26694	0.00013087	0.45961	0.00022533	490.25327749474	46.538	0.16051	46.538	46.458	46.618	0					9	5	2	0	0	0	0.13898	1	10510	10510		43.858	3.4097	1	74720			9175	11930	5100	5100	12003	12003					0.002209181002740479
FLRKLRVF	8	Unmodified	_FLRKLRVF_					0	0	0		ENST00000281038.9_1_11:78147499-78147715:-|nuORF	ENST00000281038.9_1_11:78147499-78147715:-|nuORF	ENST00000281038.9_1_11:78147499-78147715:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.3007202148438	2	539.847836	1077.68112	0.36524	0.00019718	-1.277	-0.00068937	-0.91172	-0.00049219	539.8469385022487	42.437	0.24107	42.522	42.407	42.648	0.085197					13	8	2	0	0	0	0.34319	1	9254	9254		2.5775	1.2479	1	158380			9176	9118	5101	5101	12004	12004					0.14538615464402938
FLRLITSVISF	11	Unmodified	_FLRLITSVISF_					0	0	0		ENST00000369535.4_1_1:115248605-115248731:-|nuORF	ENST00000369535.4_1_1:115248605-115248731:-|nuORF	ENST00000369535.4_1_1:115248605-115248731:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5963134765625	3	432.595579	1294.76491	-0.19952	-8.6312E-05	0.47008	0.00020336	0.27056	0.00011704	432.59553382867813	41.073	1.1092	41.169	40.313	41.422	0.096622					122	40	4	0	0	0	0.46554	1	8883	8883		2.6312	0.19645	1	1653000			9177	9778	5102	5102	12005	12005					0.12931682050793825
FLRLITSVISF	11	Unmodified	_FLRLITSVISF_					0	0	0		ENST00000369535.4_1_1:115248605-115248731:-|nuORF	ENST00000369535.4_1_1:115248605-115248731:-|nuORF	ENST00000369535.4_1_1:115248605-115248731:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5958251953125	3	432.595579	1294.76491	0.064897	2.8074E-05	-1.0943	-0.00047338	-1.0294	-0.0004453	432.59499256594756	41.401	0.25093	41.498	41.37	41.621	0.096626					17	9	3	0	0	0	0.46554	1	8932	8932		2.6312	0	1	1189400			9178	9778	5102	5102	12006	12006					0.12931682050793825
FLRLSAFVHK	10	Unmodified	_FLRLSAFVHK_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.232421875	3	406.576631	1216.70806	-0.41508	-0.00016876	-0.69212	-0.0002814	-1.1072	-0.00045016	406.57645063081554	13.217	0.4509	13.217	13.058	13.509	0					46	15	4	0	0	0	0.34325	2	336	336;352		8.4443	0.87384	1	485150	+		9179	15769	5103	5103	12007;12008	12007					0.10837679284918522
FLRLSAFVHK	10	Unmodified	_FLRLSAFVHK_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.5762939453125	3	406.576631	1216.70806	-0.40127	-0.00016315	-0.40771	-0.00016576	-0.80898	-0.00032891	406.5764857603806	13.3	0.75308	13.2	13.042	13.795	-0.099291					36	26	2	0	0	0	0.30958	1	379	379		12.175	2.6308	1	574190	+		9180	15769	5103	5103	12009	12009					0.10837679284918522
FLRLSAFVHK	10	Unmodified	_FLRLSAFVHK_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.5763854980469	3	406.576631	1216.70806	-0.42748	-0.0001738	-0.51555	-0.00020961	-0.94303	-0.00038341	406.5764641415779	13.296	0.61263	13.228	13.073	13.686	-0.067495					52	21	4	0	0	0	0.34325	1	375	375		8.4443	1.8209	1	498400	+		9181	15769	5103	5103	12010	12010					0.10837679284918522
FLRQENRKNML	11	Unmodified	_FLRQENRKNML_					0	0	0		ENSG00000198937|ENST00000373408|CCDC167	ENSG00000198937|ENST00000373408|CCDC167	ENSG00000198937|ENST00000373408|CCDC167	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2535705566406	3	483.597877	1447.7718	0.33214	0.00016062	0.22624	0.00010941	0.55837	0.00027003	483.5982571906389	44.942	0.63224	45.011	44.765	45.397	0.068569					58	22	4	0	0	0	0.33207	1	9941	9941		5.5233	2.1676	1	673330			9182	8166	5104	5104	12011	12011					0.06582671659725747
FLRQLHKK	8	Unmodified	_FLRQLHKK_					0	0	0		ENST00000463135.1_1_X:37300766-37301252:+|nuORF	ENST00000463135.1_1_X:37300766-37301252:+|nuORF	ENST00000463135.1_1_X:37300766-37301252:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.8483276367188	2	535.335093	1068.65563	0.27042	0.00014477	-0.81095	-0.00043413	-0.54053	-0.00028937	535.334749743637	19.029	0.46144	19.029	18.864	19.325	0					20	15	2	0	0	0	0.34092	1	2156	2156		13.508	1.8676	1	40397			9183	10762	5105	5105	12012	12012					0.12405140941996251
FLRQSCTYLP	10	Unmodified	_FLRQSCTYLP_					0	0	0		nc|ENSG00000273749|Q7L576-2|CYFIP1	nc|ENSG00000273749|Q7L576-2|CYFIP1	nc|ENSG00000273749|Q7L576-2|CYFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.87799072265625	3	409.877869	1226.61178	-0.1132	-4.64E-05	0.25634	0.00010507	0.14313	5.8667E-05	409.8779273668788	35.375	0.63885	35.451	35.151	35.79	0.075306					46	22	3	0	0	0	0.38745	1	7091	7091		5.7834	0.73591	1	462510			9184	12995	5106	5106	12013	12013					0.007537436626762428
FLRTPPAPA	9	Unmodified	_FLRTPPAPA_					0	0	0			REV__nc|ENSG00000006747|Q9Y6U3-3|SCIN	REV__nc|ENSG00000006747|Q9Y6U3-3|SCIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.59417724609375	2	485.279452	968.544351	0.24287	0.00011786	-1.7401	-0.00084445	-1.4973	-0.00072659	485.27851849800084	24.267	0.41608	24.194	23.997	24.414	-0.072559					25	13	2	0	0	0	0.25417	1	3644	3644		8.5933	3.8373	1	56459	+		9185	13373	5107	5107	12014	12014					0.058820815140165905
FLRWLRLRHD	10	Unmodified	_FLRWLRLRHD_					0	0	0			REV__nc|ENSG00000148339|Q6KCM7-2|SLC25A25	REV__nc|ENSG00000148339|Q6KCM7-2|SLC25A25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.7822570800781	3	471.273834	1410.79967	0.58608	0.0002762	1.2914	0.00060862	1.8775	0.00088482	471.2745276835082	36.252	0.20687	36.338	36.272	36.479	0.08625					9	6	2	0	0	0	0.31994	1	7321	7321		3.0723	1.8574	1	392040	+		9186	16421	5108	5108	12015	12015					0.11070362702093917
FLRYFRVKH	9	Unmodified	_FLRYFRVKH_					0	0	0			REV__Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|63|2|anti-sense	REV__Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|63|2|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.368896484375	2	633.366924	1264.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.35	1	112.36	111.86	112.86	0.0131								0	0	0	0.2672	1	29242	29242		0.52476	0	1		+		9187	22696	5109	5109	12016	12016					0.09752501379057321
FLSAVFFAK	9	Unmodified	_FLSAVFFAK_					0	0	0		ENST00000472192.1_1_2:27994644-27995560:+|nuORF;nc|ENSG00000243147|O75394-2|MRPL33;ENSG00000243147|ENST00000296102|MRPL33	ENST00000472192.1_1_2:27994644-27995560:+|nuORF	ENST00000472192.1_1_2:27994644-27995560:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2552490234375	2	515.292028	1028.5695	-0.19395	-9.9942E-05	0.70501	0.00036328	0.51106	0.00026334	515.292170646535	65.204	0.59676	65.292	65.135	65.732	0.088882					35	21	3	0	0	0	0.16284	1	16271	16271		30.637	4.2953	1	279060			9188	8555	5110	5110	12017	12017					0.05636136316593365
FLSAVFFAK	9	Unmodified	_FLSAVFFAK_					0	0	0		ENST00000472192.1_1_2:27994644-27995560:+|nuORF;nc|ENSG00000243147|O75394-2|MRPL33;ENSG00000243147|ENST00000296102|MRPL33	ENST00000472192.1_1_2:27994644-27995560:+|nuORF	ENST00000472192.1_1_2:27994644-27995560:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2552490234375	2	515.292028	1028.5695	0.098421	5.0715E-05	0.32517	0.00016756	0.42359	0.00021827	515.29203296251	65.44	0.49387	65.429	65.148	65.641	-0.011337					31	17	2	0	0	0	0.1939	1	16305	16305		30.637	8.8899	1	302870			9189	8555	5110	5110	12018	12018					0.05636136316593365
FLSELHTNKK	10	Unmodified	_FLSELHTNKK_					0	0	0			REV__ENST00000541377.5_1_2:122097159-122097282:-|nuORF	REV__ENST00000541377.5_1_2:122097159-122097282:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.837646484375	2	608.837862	1215.66117	-0.013757	-8.376E-06	-0.033989	-2.0694E-05	-0.047747	-2.907E-05	608.8376537357569	105.7	0.97192	105.7	105.33	106.3	0					340	139	3	0	0	0	0.40992	1	28060	28060		1.6526	0	1	931180	+		9190	22127	5111	5111	12019	12019					0.06196774943123273
FLSFTFVLF	9	Unmodified	_FLSFTFVLF_					0	0	0		ENST00000467604.5_1_3:118931398-118931611:-|nuORF	ENST00000467604.5_1_3:118931398-118931611:-|nuORF	ENST00000467604.5_1_3:118931398-118931611:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3060913085938	2	560.807511	1119.60047	0.16663	9.3445E-05	-2.321	-0.0013017	-2.1544	-0.0012082	560.8056785472678	93.64	0.22835	93.64	93.58	93.808	0					28	19	2	0	0	0	0.25417	1	24951	24951		8.5933	0	1	62929			9191	10826	5112	5112	12020	12020					0.04545289630846128
FLSGPDKELLF	11	Unmodified	_FLSGPDKELLF_					0	0	0			REV__ENST00000415922.6_1_6:26635247-26635457:-|nuORF	REV__ENST00000415922.6_1_6:26635247-26635457:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.8963317871094	3	422.564056	1264.67034	-0.062237	-2.6299E-05	2.4943	0.001054	2.432	0.0010277	422.56525719573415	40.642	0.35226	40.741	40.666	41.018	0.099403					15	12	2	0	0	0	0.33064	1	8676	8676		7.9454	0.46833	1	194280	+		9192	20812	5113	5113	12021	12021					0.04859123508799712
FLSIKTATN	9	Unmodified	_FLSIKTATN_					0	0	0			REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2532958984375	2	497.782025	993.549496	0.45356	0.00022577	-1.3731	-0.00068348	-0.91949	-0.00045771	497.781201214978	52.692	0.32503	52.692	52.55	52.875	0					17	11	2	0	0	0	0.24311	1	12390	12390		0.40072	0	1	204780	+		9193	14770	5114	5114	12022	12022					0.05246340585995313
FLSSAPDGFEL	11	Unmodified	_FLSSAPDGFEL_					0	0	0			REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.7874145507812	2	591.787504	1181.56045	0.47041	0.00027838	-0.37161	-0.00021991	0.098802	5.847E-05	591.7872160282488	71.515	1.0583	71.515	71.209	72.267	0					67	37	3	0	0	0	0.10264	1	18167	18167		39.95	1.7741	1	732350	+		9194	17855	5115	5115	12023	12023					-0.023063018303673744
FLSSAPDGFEL	11	Unmodified	_FLSSAPDGFEL_					0	0	0			REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.7874145507812	2	591.787504	1181.56045	0.40902	0.00024205	-0.62493	-0.00036983	-0.21592	-0.00012778	591.787129140578	71.443	0.92915	71.5	71.269	72.198	0.056572					72	33	3	0	0	0	0.10264	1	18152	18152		39.95	1.7741	1	896990	+		9195	17855	5115	5115	12024	12024					-0.023063018303673744
FLSSAPDGFEL	11	Unmodified	_FLSSAPDGFEL_					0	0	0			REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.7875366210938	2	591.787504	1181.56045	0.48291	0.00028578	-0.58133	-0.00034402	-0.098419	-5.8243E-05	591.7870122036916	71.594	0.85511	71.567	71.288	72.143	-0.027275					57	30	3	0	0	0	0.18241	1	18225	18225		32.786	2.9451	1	1112300	+		9196	17855	5115	5115	12025	12025					-0.023063018303673744
FLSSAPDGFEL	11	Unmodified	_FLSSAPDGFEL_					0	0	0			REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	591.787504	1181.56045	0.47041	0.00027838	-0.37161	-0.00021991	0.098802	5.847E-05	591.7872160282488	71.515	1.0583	71.515	71.209	72.267	0	-0.012426	0.00020677	NaN	39.95	67	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	732350	+		9197	17855	5115	5115							-0.023063018303673744
FLSSAPDGFEL	11	Unmodified	_FLSSAPDGFEL_					0	0	0			REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	591.787504	1181.56045	0.48291	0.00028578	-0.58133	-0.00034402	-0.098419	-5.8243E-05	591.7870122036916	71.594	0.85511	71.567	71.288	72.143	-0.027275	0.039913	-4.1447E-05	NaN	39.95	57	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1112300	+		9198	17855	5115	5115							-0.023063018303673744
FLSSEEDLSL	10	Unmodified	_FLSSEEDLSL_					0	0	0			REV__ENSG00000115993|ENST00000332624|TRAK2	REV__ENSG00000115993|ENST00000332624|TRAK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8057861328125	2	570.276969	1138.53938	0.50414	0.0002875	-1.7282	-0.00098555	-1.2241	-0.00069805	570.2750209339415	77.168	0.58678	77.223	77.01	77.597	0.05542					45	20	4	0	0	0	0.18324	1	19891	19891		52.268	12.311	1	318230	+		9199	14905	5116	5116	12026	12026					-0.02434311929891919
FLSSSNGFF	9	Unmodified	_FLSSSNGFF_					0	0	0		ENSG00000242366|ENST00000373450|UGT1A8;UGT1A8|p.Y136Ifs*8|1|0.41|ENSG00000242366|chr2:233618110-233618111|-/A|frameshift_variant;UGT1A8|p.F150Pfs*9|1|0.04|ENSG00000242366|chr2:233618154-233618155|-/CCAGAGTG|frameshift_variant	ENSG00000242366|ENST00000373450|UGT1A8	ENSG00000242366|ENST00000373450|UGT1A8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.5932922363281	2	503.23745	1004.46035	0.31819	0.00016012	1.114	0.00056062	1.4322	0.00072074	503.23787594518194	59.105	0.67112	59.196	58.875	59.547	0.091301					60	23	3	0	0	0	0.25291	1	14274	14274		9.3474	2.9933	1	1288500			9200	8544	5117	5117	12027	12027					-0.041704943735112465
FLSSSNGFF	9	Unmodified	_FLSSSNGFF_					0	0	0		ENSG00000242366|ENST00000373450|UGT1A8;UGT1A8|p.Y136Ifs*8|1|0.41|ENSG00000242366|chr2:233618110-233618111|-/A|frameshift_variant;UGT1A8|p.F150Pfs*9|1|0.04|ENSG00000242366|chr2:233618154-233618155|-/CCAGAGTG|frameshift_variant	ENSG00000242366|ENST00000373450|UGT1A8	ENSG00000242366|ENST00000373450|UGT1A8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	503.23745	1004.46035	0.46679	0.00023491	0.8589	0.00043223	1.3257	0.00066714	503.23776037123787	59.271	0.70325	59.256	58.977	59.68	-0.014267	0.015068	-0.00017048	NaN	9.3474	61	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1230500			9201	8544	5117	5117							-0.041704943735112465
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.81298828125	2	586.314554	1170.61456	-0.064007	-3.7528E-05	0.28756	0.0001686	0.22355	0.00013107	586.3145059764023	101.28	0.26012	101.28	101.09	101.35	0					51	36	2	0	0	0	0.25938	1	26983	26983		4.3292	0	1	85795	+		9202	22033	5118	5118	12028	12028					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8133544921875	2	586.314554	1170.61456	0.23602	0.00013838	-0.074106	-4.3449E-05	0.16191	9.4931E-05	586.3142812984192	93.408	0.35732	93.408	93.12	93.478	0					43	31	2	0	0	0	0.26168	1	24797	24797		1.8442	0	1	140610	+		9203	22033	5118	5118	12029	12029					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8137817382812	2	586.314554	1170.61456	-0.064168	-3.7623E-05	0.25908	0.0001519	0.19491	0.00011428	586.3144174782352	100.27	0.45975	100.27	100.11	100.57	0					88	60	2	0	0	0	0.25526	1	26791	26791		7.9102	0.3012	1	103620	+		9204	22033	5118	5118	12030	12030					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135986328125	2	586.314554	1170.61456	0.036338	2.1305E-05	-0.014172	-8.3092E-06	0.022166	1.2996E-05	586.3142661449608	97.358	0.65386	97.358	96.867	97.521	0					90	61	2	0	0	0	0.25526	1	26051	26051		7.9102	4.3137	1	126800	+		9205	22033	5118	5118	12031	12031					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8132934570312	2	586.314554	1170.61456	0.30924	0.00018131	-0.22859	-0.00013403	0.080645	4.7283E-05	586.3142920659968	90.628	0.44035	90.719	90.481	90.921	0.090675					61	34	2	0	0	0	0.25938	1	23976	23976		4.3292	1.0479	1	168750	+		9206	22033	5118	5118	12032	12032					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134155273438	2	586.314554	1170.61456	0.055755	3.269E-05	-0.28855	-0.00016918	-0.2328	-0.00013649	586.3141145169893	100.85	0.30953	100.87	100.73	101.04	0.027206					61	44	2	0	0	0	0.25526	1	26942	26942		7.9102	3.1541	1	98148	+		9207	22033	5118	5118	12033	12033					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	586.314554	1170.61456	0.05541	3.2488E-05	-0.30922	-0.0001813	-0.25381	-0.00014881	586.314102227957	102.36	0.18062	102.38	102.26	102.44	0.016685					37	25	2	0	0	0	0.25938	1	27233	27233		4.3292	0.73274	1	117170	+		9208	22033	5118	5118	12034	12034					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.813720703125	2	586.314554	1170.61456	0.11002	6.4507E-05	-0.16585	-9.7241E-05	-0.05583	-3.2734E-05	586.3140684822345	97.363	0.45471	97.434	97.183	97.638	0.070465					66	47	2	0	0	0	0.25526	1	26028	26028		7.9102	3.5809	1	133300	+		9209	22033	5118	5118	12035	12035					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.812744140625	2	586.314554	1170.61456	0.054779	3.2118E-05	-0.38487	-0.00022566	-0.33009	-0.00019354	586.3140412178914	102.08	0.36479	102.1	101.8	102.16	0.016685					77	52	2	0	0	0	0.25526	1	27148	27148		7.9102	4.3137	1	117900	+		9210	22033	5118	5118	12036	12036					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8137817382812	2	586.314554	1170.61456	0.065666	3.8501E-05	0.36654	0.00021491	0.43221	0.00025341	586.3145418946317	98.769	0.32991	98.82	98.729	99.058	0.050888					52	42	2	0	0	0	0.25938	1	26415	26415		4.3292	4.0602	1	125450	+		9211	22033	5118	5118	12037	12037					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.81396484375	2	586.314554	1170.61456	0.26068	0.00015284	0.23317	0.00013671	0.49385	0.00028955	586.314486429826	92.401	0.79639	92.491	91.86	92.656	0.089195					80	52	2	0	0	0	0.25938	1	24539	24539		4.3292	2.485	1	180870	+		9212	22033	5118	5118	12038	12038					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8139038085938	2	586.314554	1170.61456	0.056415	3.3077E-05	0.17641	0.00010343	0.23283	0.00013651	586.3143027835275	99.122	0.16641	99.173	99.087	99.253	0.050896					34	21	2	0	0	0	0.25938	1	26523	26523		4.3292	2.485	1	78163	+		9213	22033	5118	5118	12039	12039					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8138427734375	2	586.314554	1170.61456	0.05481	3.2136E-05	0.34226	0.00020067	0.39707	0.00023281	586.3145200023024	100.22	0.34734	100.26	100.17	100.52	0.038994					65	46	2	0	0	0	0.25622	1	26769	26769		7.2892	4.0079	1	187070	+		9214	22033	5118	5118	12040	12040					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8139038085938	2	586.314554	1170.61456	0.055528	3.2557E-05	0.57512	0.0003372	0.63065	0.00036976	586.3145622034285	100.04	0.24084	100.08	99.929	100.17	0.038994					42	32	2	0	0	0	0.25066	1	26714	26714		11.64	6.4096	1	128500	+		9215	22033	5118	5118	12041	12041					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8135986328125	2	586.314554	1170.61456	0.47576	0.00027895	0.019786	1.1601E-05	0.49555	0.00029055	586.3144687378705	90.547	1.5116	90.547	89.403	90.915	0.0003891					166	119	2	0	0	0	0.25938	1	23919	23919		4.3292	2.6766	1	220130	+		9216	22033	5118	5118	12042	12042					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.813720703125	2	586.314554	1170.61456	0.29975	0.00017575	0.066899	3.9224E-05	0.36665	0.00021497	586.314295861054	100.35	0.30959	100.34	100.29	100.6	-0.006897					68	41	2	0	0	0	0.25526	1	26848	26848		7.9102	4.3137	1	138070	+		9217	22033	5118	5118	12043	12043					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8134155273438	2	586.314554	1170.61456	0.30576	0.00017927	0.067798	3.9751E-05	0.37355	0.00021902	586.3142819718712	99.074	0.33005	99.067	98.87	99.2	-0.006897					64	42	2	0	0	0	0.25938	1	26530	26530		4.3292	0	1	132820	+		9218	22033	5118	5118	12044	12044					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8135375976562	2	586.314554	1170.61456	0.29919	0.00017542	-0.52492	-0.00030777	-0.22574	-0.00013235	586.3138887632198	99.486	0.18009	99.48	99.406	99.586	-0.006897					27	21	2	0	0	0	0.25526	1	26658	26658		7.9102	5.6074	1	126950	+		9219	22033	5118	5118	12045	12045					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.813720703125	2	586.314554	1170.61456	0.29968	0.00017571	-0.19352	-0.00011346	0.10616	6.2245E-05	586.3140433260264	99.223	0.23907	99.216	99.167	99.406	-0.0069046					49	30	2	0	0	0	0.25526	1	26625	26625		7.9102	5.3327	1	146460	+		9220	22033	5118	5118	12046	12046					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8135375976562	2	586.314554	1170.61456	0.29958	0.00017565	-0.21317	-0.00012498	0.086407	5.0662E-05	586.3139051394897	99.709	0.27643	99.702	99.525	99.801	-0.0069046					56	35	2	0	0	0	0.25526	1	26658	26658		7.9102	5.0209	1	109580	+		9221	22033	5118	5118	12047	12047					0.036073351118375285
FLSTRRQYT	9	Unmodified	_FLSTRRQYT_					0	0	0			REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	REV__ENST00000532441.5_1_11:104776194-104777802:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	586.314554	1170.61456	-0.064319	-3.7711E-05	0.21481	0.00012595	0.15049	8.8237E-05	586.3144440592764	99.872	0.14009	99.872	99.806	99.946	0	-0.013289	0.00014579	NaN	11.64	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134290	+		9222	22033	5118	5118							0.036073351118375285
FLSTSVQLP	9	Unmodified	_FLSTSVQLP_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-4|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7497863769531	2	496.276575	990.538597	0.29817	0.00014798	-0.69407	-0.00034445	-0.3959	-0.00019647	496.2753587532587	69.786	0.54075	69.786	69.59	70.131	0					35	19	3	0	0	0	0.21389	1	17629	17629		19.257	3.1079	1	189420			9223	5043	5119	5119	12048	12048					0.04294938211717181
FLSVPPCSPSR	11	Unmodified	_FLSVPPCSPSR_					0	0	0			REV__ENST00000356289.9_1_11:118064846-118064993:-|nuORF	REV__ENST00000356289.9_1_11:118064846-118064993:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.3067016601562	2	595.305341	1188.59613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.563	1	88.652	88.152	89.152	0.089195								0	0	0	0.36137	1	23392	23392		5.7319	0.43497	1		+		9224	20197	5120	5120	12049	12049					0.009374571456191916
FLSYTHLK	8	Unmodified	_FLSYTHLK_					0	0	0			REV__nc|ENSG00000171680|O94827-4|PLEKHG5	REV__nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.29266357421875	2	504.779285	1007.54402	0.54329	0.00027424	-2.1546	-0.0010876	-1.6113	-0.00081335	504.77948535292535	60.884	0.54111	60.981	60.552	61.093	0.096989					27	18	2	0	0	0	0.32886	1	14885	14885		21.747	0	1	820640	+		9225	17659	5121	5121	12050	12050					0.04054661794179992
FLTDASWSI	9	Unmodified	_FLTDASWSI_					0	0	0		nc|ENSG00000111799|Q99715-2|COL12A1;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3007202148438	2	520.258382	1038.50221	0.63518	0.00033046	-1.0548	-0.00054876	-0.41961	-0.00021831	520.2584264874475	64.089	0.98136	64.089	63.502	64.483	0					87	35	3	0	0	0	0.17611	1	15889	15889		34.102	17.016	1	360840			9226	2389	5122	5122	12051	12051					-0.015499386850024166
FLTDASWSI	9	Unmodified	_FLTDASWSI_					0	0	0		nc|ENSG00000111799|Q99715-2|COL12A1;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3006591796875	2	520.258382	1038.50221	0.51121	0.00026596	-0.95795	-0.00049838	-0.44675	-0.00023242	520.2585298870025	63.934	0.80214	64.027	63.618	64.42	0.092884					64	28	3	0	0	0	0.19839	1	15841	15841		21.747	4.6601	1	317360			9227	2389	5122	5122	12052	12052					-0.015499386850024166
FLTDFALIF	9	Unmodified	_FLTDFALIF_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7971801757812	2	543.797143	1085.57973	0.56235	0.0003058	0.21316	0.00011592	0.77551	0.00042172	543.7969477416674	89.521	0.84395	89.521	89.131	89.975	0					110	54	3	0	0	0	0.26879	1	23691	23691		13.508	0	1	263080	+		9228	16655	5123	5123	12053	12053					0.04036699251173559
FLTDFALIF	9	Unmodified	_FLTDFALIF_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7974243164062	2	543.797143	1085.57973	0.64472	0.0003506	0.2372	0.00012899	0.88192	0.00047959	543.797022271602	89.332	0.86281	89.423	89.073	89.936	0.090569					102	56	3	0	0	0	0.22883	2	23642	23642;23694		19.439	0	1	390390	+		9229	16655	5123	5123	12054;12055	12054					0.04036699251173559
FLTDFALIF	9	Unmodified	_FLTDFALIF_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.79736328125	2	543.797143	1085.57973	0.69419	0.0003775	-0.20774	-0.00011297	0.48646	0.00026454	543.7968685583718	89.463	1.4062	89.462	88.998	90.404	-0.00080872					138	99	2	0	0	0	0.22883	1	23679	23679		19.439	0	1	491730	+		9230	16655	5123	5123	12056	12056					0.04036699251173559
FLTLFAMGF	9	Unmodified	_FLTLFAMGF_					0	0	0			REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I;REV__ENSG00000196557|ENST00000348261|CACNA1H;REV__ENSG00000006283|ENST00000359106|CACNA1G;REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__ENSG00000006283|ENST00000359106|CACNA1G	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3035278320312	2	523.772614	1045.53067	0.81456	0.00042664	1.0084	0.00052816	1.8229	0.00095481	523.772995954706	77.228	0.84927	77.196	76.829	77.678	-0.031334					59	30	3	0	0	0	0.25417	1	19838	19838		8.5933	4.264	1	498200	+		9231	14184;18661;13357;23149	5124	5124	12057	12057					0.009730876905905461
FLTSNRTK	8	Unmodified	_FLTSNRTK_					0	0	0		L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|99|3|sense;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|109|3|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|99|3|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|99|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2438659667969	2	483.771991	965.529429	-0.13539	-6.5496E-05	-0.22991	-0.00011122	-0.3653	-0.00017672	483.77169068301754	13.915	0.45474	13.811	13.568	14.023	-0.10466					26	15	2	0	0	0	0.344	1	527	527		2.5775	2.5775	1	195480			9232	12434	5125	5125	12058	12058					0.045285896460427466
FLTTVEEEL	9	Unmodified	_FLTTVEEEL_					0	0	0		ENSG00000243244|ENST00000404752|STON1;nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L	ENSG00000243244|ENST00000404752|STON1	ENSG00000243244|ENST00000404752|STON1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.338134765625	2	540.776605	1079.53866	0.74979	0.00040547	-3.1108	-0.0016823	-2.361	-0.0012768	540.7751110110366	83.718	0.12665	83.701	83.661	83.788	-0.016823					6	5	2	0	0	0	0.25202	1	21888	21888		6.7232	0.51738	1	89697			9233	888	5126	5126	12059	12059					0.0020689342104560637
FLTTVEEEL	9	Unmodified	_FLTTVEEEL_					0	0	0		ENSG00000243244|ENST00000404752|STON1;nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L	ENSG00000243244|ENST00000404752|STON1	ENSG00000243244|ENST00000404752|STON1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	540.776605	1079.53866	0.63704	0.00034449	-4.8529	-0.0026244	-4.2159	-0.0022799	540.7741031393346	83.302	0.12942	83.376	83.298	83.427	0.073097	-0.16273	-0.001242	NaN	6.7232	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50166			9234	888	5126	5126							0.0020689342104560637
FLVGHPGF	8	Unmodified	_FLVGHPGF_					0	0	0			REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.58245849609375	2	437.234513	872.454474	-0.14708	-6.4309E-05	-3.5041	-0.0015321	-3.6512	-0.0015964	437.2330489760241	28.598	0.25294	28.598	28.446	28.699	0					13	8	2	0	0	0	0.34297	1	4972	4972		6.3541	0	1	89512	+		9235	15054	5127	5127	12060	12060					0.013144519054662851
FLVGHPGF	8	Unmodified	_FLVGHPGF_					0	0	0			REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.5824279785156	2	437.234513	872.454474	-0.10271	-4.4907E-05	-4.202	-0.0018373	-4.3047	-0.0018822	437.23278457338307	28.545	0.34089	28.54	28.411	28.752	-0.0042572					14	11	2	0	0	0	0.34147	1	4996	4996		11.114	1.767	1	56670	+		9236	15054	5127	5127	12061	12061					0.013144519054662851
FLVIQCCLF	9	Unmodified	_FLVIQCCLF_					0	0	0		nc|ENSG00000173610|P0DTE4-1|UGT2A1;ENSG00000173610|ENST00000286604|UGT2A1;nc|ENSG00000173610|P0DTE4-4|UGT2A1;nc|ENSG00000271271|P0DTE5-2|UGT2A2;ENSG00000271271|ENST00000604629|UGT2A2	nc|ENSG00000173610|P0DTE4-1|UGT2A1	nc|ENSG00000173610|P0DTE4-1|UGT2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.29248046875	2	543.279749	1084.54494	0.66075	0.00035897	-0.99403	-0.00054004	-0.33328	-0.00018106	543.2788901547685	72.018	0.52	72.074	71.783	72.303	0.05658					22	18	2	0	0	0	0.23775	1	18310	18310		18.135	1.0484	1	115920			9237	12841	5128	5128	12062	12062					0.006054168472019228
FLVSKDKF	8	Unmodified	_FLVSKDKF_					0	0	0		ENST00000517617.1_1_8:68864752-69023167:+|nuORF;nc|ENSG00000046889|Q70Z35-4|PREX2	ENST00000517617.1_1_8:68864752-69023167:+|nuORF	ENST00000517617.1_1_8:68864752-69023167:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7493896484375	2	492.28166	982.548768	0.44175	0.00021747	-1.2416	-0.0006112	-0.79981	-0.00039373	492.28094992252755	64.714	0.61518	64.714	64.513	65.128	0					29	22	2	0	0	0	0.31375	1	16080	16080		26.341	4.5946	1	236270			9238	11439	5129	5129	12063	12063					0.05679545936948216
FLVYKLVTKLR	11	Unmodified	_FLVYKLVTKLR_					0	0	0			REV__ENSG00000129925|ENST00000431232|PGAP6	REV__ENSG00000129925|ENST00000431232|PGAP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.265869140625	3	460.630624	1378.87004	-0.032305	-1.4881E-05	1.5074	0.00069434	1.4751	0.00067946	460.631174082644	42.708	0.40153	42.799	42.554	42.956	0.091362					25	14	3	0	0	0	0.33296	1	9252	9252		2.6312	2.5364	1	177530	+		9239	15432	5130	5130	12064	12064					0.1957622324721342
FLWGPALL	8	Unmodified	_FLWGPALL_					0	0	0		ENSG00000090402|ENST00000264382|SI	ENSG00000090402|ENST00000264382|SI	ENSG00000090402|ENST00000264382|SI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7677001953125	2	458.768189	915.521825	0.17831	8.1803E-05	-0.7076	-0.00032463	-0.52929	-0.00024282	458.76773836571897	44.361	1.0569	44.361	43.878	44.935	0					60	38	2	0	0	0	0.35781	1	9944	9944		24.21	0	1	926170			9240	1376	5131	5131	12065	12065					0.060684821164159075
FLWLNKLFP	9	Unmodified	_FLWLNKLFP_					0	0	0			REV__ENST00000475752.1_1_15:32976717-32988807:+|nuORF	REV__ENST00000475752.1_1_15:32976717-32988807:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.34228515625	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.6	1	119.6	119.1	120.1	0								0	0	0	0.26704	1	30854	30854		0.6015	0.076735	1		+		9241	21411	5132	5132	12066	12066					0.08828373650385402
FLWLVYML	8	Unmodified	_FLWLVYML_					0	0	0			REV__nc|ENSG00000070729|Q14028-2|CNGB1	REV__nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3252563476562	2	542.798632	1083.58271	0.53298	0.0002893	-1.4786	-0.00080256	-0.94558	-0.00051326	542.7969940150236	17.525	0.31845	17.464	17.358	17.676	-0.060429					13	10	2	0	0	0	0.34297	1	1668	1668		6.3541	3.4649	1	22071	+		9242	13731	5133	5133	12067	12067					0.04426251104359835
FLYIENQFF	9	Unmodified	_FLYIENQFF_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5377197265625	3	407.53773	1219.59136	0.014715	5.997E-06	0.077793	3.1704E-05	0.092509	3.7701E-05	407.53770376983164	57.404	0.70943	57.49	57.21	57.92	0.085617					60	25	3	0	0	0	0.30459	1	13833	13833		8.1555	0	1	1398900			9243	3416	5134	5134	12068	12068					-0.009651037255025585
FLYPALTPF	9	Unmodified	_FLYPALTPF_					0	0	0		ENST00000532097.5_1_11:236548-236653:+|nuORF	ENST00000532097.5_1_11:236548-236653:+|nuORF	ENST00000532097.5_1_11:236548-236653:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.2587890625	2	534.791861	1067.56917	0.46375	0.00024801	0.11316	6.0515E-05	0.5769	0.00030852	534.7936427181768	52.234	0.4979	52.234	51.885	52.382	0					20	17	2	0	0	0	0.21905	1	12147	12147		23.148	9.6405	1	223220			9244	11635	5135	5135	12069	12069					0.038087165967453984
FLYPALTPF	9	Unmodified	_FLYPALTPF_					0	0	0		ENST00000532097.5_1_11:236548-236653:+|nuORF	ENST00000532097.5_1_11:236548-236653:+|nuORF	ENST00000532097.5_1_11:236548-236653:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	534.791861	1067.56917	0.35069	0.00018755	-3.5404	-0.0018934	-3.1897	-0.0017058	534.7908817284617	52.22	0.40747	52.27	52.116	52.523	0.050575	0.018443	-0.0017733	NaN	23.148	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214460			9245	11635	5135	5135							0.038087165967453984
FLYQEGENLST	11	Unmodified	_FLYQEGENLST_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.7111511230469	3	434.206709	1299.5983	0.20553	8.9241E-05	2.5328	0.0010998	2.7383	0.001189	434.54225522540236	55.196	0.6181	55.267	55.085	55.703	0.070885					36	22	2	0	0	0	0.3287	1	13229	13229		12.228	6.8249	1	496590	+		9246	16705;23038	5136	5136	12070	12070					-0.03951835635575662
FLYWEFFKKTF	11	Unmodified	_FLYWEFFKKTF_					0	0	0		ENST00000287218.8_1_6:38120967-38121303:+|nuORF	ENST00000287218.8_1_6:38120967-38121303:+|nuORF	ENST00000287218.8_1_6:38120967-38121303:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.8074951171875	3	519.270984	1554.79112	0.24305	0.00012621	0.835	0.00043359	1.0781	0.0005598	519.6059511049909	95.065	0.29146	95.148	94.991	95.282	0.082779					41	28	2	0	0	0	0.33326	1	25344	25344		1.4551	0	1	100250			9247	9144	5137	5137	12071	12071					0.03591951222233547
FLYWEFFKKTF	11	Unmodified	_FLYWEFFKKTF_					0	0	0		ENST00000287218.8_1_6:38120967-38121303:+|nuORF	ENST00000287218.8_1_6:38120967-38121303:+|nuORF	ENST00000287218.8_1_6:38120967-38121303:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	519.270984	1554.79112	0.20835	0.00010819	1.0059	0.00052232	1.2142	0.00063051	519.2711624269635	95.236	0.46715	95.236	94.809	95.276	0	0.044102	0.00012689	NaN	1.4551	57	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83482			9248	9144	5137	5137							0.03591951222233547
FMAVAPLVF	9	Unmodified	_FMAVAPLVF_					0	0	0		nc|ENSG00000159961|P47888|OR3A3;ENSG00000159961|ENST00000641141|OR3A3	nc|ENSG00000159961|P47888|OR3A3	nc|ENSG00000159961|P47888|OR3A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.2731018066406	2	497.775157	993.53576	0.61581	0.00030653	1.4573	0.00072542	2.0731	0.001032	497.77504501828093	84.461	0.24438	84.538	84.342	84.586	0.077095					12	9	2	0	0	0	0.25291	1	22146	22146		5.2307	0	1	71762			9249	5430	5138	5138	12072	12072					0.03873391553213423
FMCHRRQA	8	Unmodified	_FMCHRRQA_					0	0	0		ENSG00000164256|ENST00000296682|PRDM9;PRDM9|p.R381Sfs*71|1|0.06|ENSG00000164256|chr5:23524522-23524523|-/TTCTATAGAA|frameshift_variant;ENSG00000126856|ENST00000449207|PRDM7	ENSG00000164256|ENST00000296682|PRDM9	ENSG00000164256|ENST00000296682|PRDM9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7750854492188	2	524.750013	1047.48547	0.26463	0.00013886	-1.1571	-0.00060718	-0.89246	-0.00046832	524.7493190800968	16.558	0.50134	16.444	16.166	16.667	-0.11434					30	17	2	0	0	0	0.344	1	1432	1432		2.5775	0.27475	1	57933			9250	5818	5139	5139	12073	12073					-0.0363704132357725
FMDTNNMYEI	10	Unmodified	_FMDTNNMYEI_					0	0	0			REV__ENSG00000136011|ENST00000388887|STAB2	REV__ENSG00000136011|ENST00000388887|STAB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.96337890625	2	639.262481	1276.51041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.72	1	100.72	100.22	101.22	0								0	0	0	0.38126	1	26896	26896		1.6526	0.17072	1		+		9251	15779	5140	5140	12074	12074					-0.11678495822184232
FMFYSYMQN	9	Unmodified	_FMFYSYMQN_					0	0	0			REV__ENSG00000137806|ENST00000260361|NDUFAF1	REV__ENSG00000137806|ENST00000260361|NDUFAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.5001525878906	3	410.836794	1229.48855	0.53068	0.00021802	1.3688	0.00056235	1.8995	0.00078037	410.8374684702793	56.381	0.37269	56.459	56.384	56.756	0.078671					17	13	2	0	0	0	0.25049	1	13558	13558		13.615	7.8314	1	414440	+		9252	15884	5141	5141	12075	12075					-0.11701255780099018
FMGLMKPATQ	10	Unmodified	_FMGLMKPATQ_					0	0	0			REV__ENSG00000031081|ENST00000264245|ARHGAP31	REV__ENSG00000031081|ENST00000264245|ARHGAP31	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.2860717773438	2	562.285563	1122.55657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.24	1	115.24	114.74	115.74	0								0	0	0	0.37664	1	29871	29871		3.5965	0	1		+		9253	13494	5142	5142	12076	12076					0.00019613870563262026
FMGNTSPSSSF	11	Unmodified	_FMGNTSPSSSF_					0	0	0			REV__nc|ENSG00000129204|P35125-2|USP6	REV__nc|ENSG00000129204|P35125-2|USP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.2467651367188	2	581.247689	1160.48082	0.20492	0.00011911	-1.2116	-0.00070427	-1.0067	-0.00058516	581.246528754372	92.821	0.48473	92.821	92.548	93.032	0					63	38	2	0	0	0	0.39785	1	24676	24676		11.518	1.3673	1	123990	+		9254	15403	5143	5143	12077	12077					-0.09299691776004693
FMHPKSPR	8	Unmodified	_FMHPKSPR_					0	0	0			REV__nc|ENSG00000077092|P10826-3|RARB	REV__nc|ENSG00000077092|P10826-3|RARB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.6723327636719	2	500.263279	998.512005	0.34556	0.00017287	0.3437	0.00017194	0.68926	0.00034481	500.7648231237038	17.144	0.17166	17.144	17.014	17.186	0					6	5	2	0	0	0	0.34408	1	1536	1536		2.3027	0.4585	1	18000	+		9255	13836	5144	5144	12078	12078					0.012689708393963883
FMIILGVF	8	Unmodified	_FMIILGVF_					0	0	0		ENST00000477264.1_1_1:9790568-9793533:-|nuORF;nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1	ENST00000477264.1_1_1:9790568-9793533:-|nuORF	ENST00000477264.1_1_1:9790568-9793533:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7314453125	2	470.27225	938.529947	0.23378	0.00010994	0.55535	0.00026117	0.78914	0.00037111	470.27256138064695	87.024	0.88261	87.024	86.675	87.558	0					63	36	2	0	0	0	0.3439	1	22914	22914		2.8892	0	1	176570			9256	6560	5145	5145	12079	12079					0.058222930415468
FMITLLAIP	9	Unmodified	_FMITLLAIP_					0	0	0			REV__HTR2B|p.T305Sfs*16|1|0.16|ENSG00000135914|chr2:231109031-231109049|TTTTTCCCAATTGTGGATG/-|frameshift_variant	REV__HTR2B|p.T305Sfs*16|1|0.16|ENSG00000135914|chr2:231109031-231109049|TTTTTCCCAATTGTGGATG/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.80413818359375	2	509.803914	1017.59328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.34	1	118.34	117.84	118.84	0								0	0	0	0.26334	1	30574	30574		2.0598	0.21551	1		+		9257	15770	5146	5146	12080	12080					0.08518233758763927
FMKLYTSMPVG	11	Unmodified	_FMKLYTSMPVG_					0	0	0			REV__ENSG00000204954|ENST00000378090|UQCC6	REV__ENSG00000204954|ENST00000378090|UQCC6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.2156982421875	3	425.215494	1272.62465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.888	1	83.888	83.388	84.388	0								0	0	0	0.37252	1	21965	21965		1.3296	0	1		+		9258	18974	5147	5147	12081	12081					-0.000755612694320007
FMLVPLIK	8	Unmodified	_FMLVPLIK_					0	0	0		ENST00000377465.5_1_20:18508152-18508233:+|nuORF	ENST00000377465.5_1_20:18508152-18508233:+|nuORF	ENST00000377465.5_1_20:18508152-18508233:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2422790527344	2	480.801174	959.587796	0.34444	0.00016561	-0.41577	-0.0001999	-0.071325	-3.4293E-05	480.80091205746373	88.133	0.50999	88.13	87.952	88.462	-0.0028381					32	24	2	0	0	0	0.3439	1	23213	23213		2.8892	0	1	63656			9259	9936	5148	5148	12082	12082					0.1063855496696533
FMLYQVHDHL	10	Unmodified	_FMLYQVHDHL_					0	0	0		ENST00000455270.5_1_3:186838863-186838917:-|nuORF	ENST00000455270.5_1_3:186838863-186838917:-|nuORF	ENST00000455270.5_1_3:186838863-186838917:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.8821716308594	3	434.881502	1301.62268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.35	1	112.33	111.83	112.83	-0.015625								0	0	0	0.38196	1	29225	29225		0.77653	0	1				9260	10685	5149	5149	12083	12083					-0.016068539630168743
FMNAILQSL	9	Unmodified	_FMNAILQSL_					0	0	0		nc|ENSG00000140455|Q9Y6I4-2|USP3;ENSG00000140455|ENST00000380324|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.279541015625	2	518.778428	1035.5423	0.45303	0.00023502	1.0915	0.00056627	1.5446	0.00080129	519.2796087917612	93.185	1.6257	93.184	92.337	93.962	-0.00050354					216	132	2	0	0	0	0.21447	1	24859	24859		21.537	3.3906	1	1087000			9261	4304	5150	5150	12084	12084					0.02595284713925139
FMPPNFPEF	9	Oxidation (M)	_FM(Oxidation (M))PPNFPEF_		FM(1)PPNFPEF		FM(42)PPNFPEF	0	0	1		nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|O94854-4|MACF1	nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|O94854|MACF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2545166015625	2	571.254785	1140.49502	0.48489	0.000277	-0.47636	-0.00027212	0.0085281	4.8717E-06	571.2545496454728	78.946	0.73086	78.946	78.558	79.289	0					50	29	2	0	0	0	0.079752	1	20466	20466		41.84	23.693	1	258550			9262	12691	5151	5151	12085	12085		972			-0.06960994557084632
FMPRFVRF	8	Unmodified	_FMPRFVRF_					0	0	0		nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;ENST00000512124.6_1_5:31467712-31485015:-|nuORF	nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7591552734375	2	550.297122	1098.57969	0.68251	0.00037558	-2.5123	-0.0013825	-1.8298	-0.0010069	550.7950157921202	78.89	0.86861	78.86	78.601	79.469	-0.030434					46	35	2	0	0	0	0.34185	1	20514	20514		10.183	0.83596	1	165960			9263	2496	5152	5152	12086	12086					0.034344207702133644
FMPRVHEL	8	Unmodified	_FMPRVHEL_					0	0	0			REV__ARFGEF1|p.W1378Gfs*2|1|0.21|ENSG00000066777|chr8:67224979-67224979|A/-|frameshift_variant	REV__ARFGEF1|p.W1378Gfs*2|1|0.21|ENSG00000066777|chr8:67224979-67224979|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7706298828125	2	514.770937	1027.52732	0.4769	0.0002455	-0.48811	-0.00025126	-0.011205	-5.7682E-06	514.7703009959339	87.936	1.1254	87.936	87.643	88.768	0					164	56	4	0	0	0	0.41097	1	23270	23270		18.135	5.6034	1	2170300	+		9264	13108	5153	5153	12087	12087					0.014658376366014636
FMRWMWWLFSF	11	Unmodified	_FMRWMWWLFSF_					0	0	0		ENST00000554493.1_1_14:68129224-68156947:-|nuORF;ENST00000553582.5_1_14:68129224-68156858:-|nuORF;ENST00000553816.5_1_14:68151682-68162420:-|nuORF;nc|ENSG00000072042|Q8TC12-3|RDH11;nc|ENSG00000072042|Q8TC12-2|RDH11;ENSG00000072042|ENST00000381346|RDH11	ENST00000554493.1_1_14:68129224-68156947:-|nuORF	ENST00000554493.1_1_14:68129224-68156947:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8300170898438	3	546.257916	1635.75192	0.31428	0.00017168	-1.3582	-0.00074191	-1.0439	-0.00057023	546.2574118398612	18.307	0.31856	18.307	18.216	18.535	0					15	10	2	0	0	0	0.33352	1	1924	1924		0.08335	0	1	42537			9265	967	5154	5154	12088	12088					-0.04052795604593484
FMSFLFET	8	Unmodified	_FMSFLFET_					0	0	0			REV__ENSG00000180433|ENST00000641861|OR6K6	REV__ENSG00000180433|ENST00000641861|OR6K6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2528381347656	2	511.238604	1020.46266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.895	1	98.888	98.388	99.388	-0.006897								0	0	0	0.36961	1	26496	26496		5.7604	2.4791	1		+		9266	18110	5155	5155	12089	12089					-0.04675781960065706
FMSILPII	8	Unmodified	_FMSILPII_					0	0	0		ENSG00000183251|ENST00000380224|OR51B4	ENSG00000183251|ENST00000380224|OR51B4	ENSG00000183251|ENST00000380224|OR51B4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2771911621094	2	467.277532	932.540511	-0.20981	-9.804E-05	0.13842	6.4679E-05	-0.071393	-3.336E-05	467.2773961578591	95.671	2.232	95.671	94.896	97.128	0					470	215	3	0	0	0	0.35375	1	25631	25631		24.674	0.46393	1	2522300			9267	7354	5156	5156	12090	12090					0.07154275695984325
FMSILPII	8	Unmodified	_FMSILPII_					0	0	0		ENSG00000183251|ENST00000380224|OR51B4	ENSG00000183251|ENST00000380224|OR51B4	ENSG00000183251|ENST00000380224|OR51B4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.27734375	2	467.277532	932.540511	-0.054565	-2.5497E-05	-0.11196	-5.2314E-05	-0.16652	-7.7811E-05	467.27739302920287	95.533	1.5098	95.61	95.308	96.817	0.077408					251	140	2	0	0	0	0.2157	1	25607	25607		40.449	7.9949	1	4881200			9268	7354	5156	5156	12091	12091					0.07154275695984325
FMSVGISIL	9	Unmodified	_FMSVGISIL_					0	0	0			REV__nc|ENSG00000157593|Q8TB61-4|SLC35B2	REV__nc|ENSG00000157593|Q8TB61-4|SLC35B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.6345520019531	2	483.770071	965.52559	0.24921	0.00012056	0.74125	0.00035859	0.99045	0.00047915	483.76814428312986	91.459	0.0495	91.55	91.52	91.57	0.090668					6	4	2	0	0	0	0.25526	1	24272	24272		7.9102	0	1	24604	+		9269	23040	5157	5157	12092	12092					0.04144783827985066
FMSVSAPLL	9	Unmodified	_FMSVSAPLL_					0	0	0			REV__nc|ENSG00000163755|Q969F9-2|HPS3	REV__nc|ENSG00000163755|Q969F9-2|HPS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7620849609375	2	482.762246	963.50994	0.37353	0.00018033	0.30909	0.00014922	0.68262	0.00032954	482.76232505702484	87.488	0.79849	87.488	86.966	87.765	0					47	35	2	0	0	0	0.24311	1	23071	23071		16.942	1.0951	1	226810	+		9270	23059	5158	5158	12093	12093					0.02672497310925337
FMSVSAPLL	9	Unmodified	_FMSVSAPLL_					0	0	0			REV__nc|ENSG00000163755|Q969F9-2|HPS3	REV__nc|ENSG00000163755|Q969F9-2|HPS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7622985839844	2	482.762246	963.50994	0.30187	0.00014573	0.33173	0.00016015	0.63361	0.00030588	482.7623359483179	87.351	0.78317	87.438	86.961	87.744	0.087097					56	35	2	0	0	0	0.25066	1	23051	23051		11.64	4.3511	1	241300	+		9271	23059	5158	5158	12094	12094					0.02672497310925337
FMSVSAPLL	9	Unmodified	_FMSVSAPLL_					0	0	0			REV__nc|ENSG00000163755|Q969F9-2|HPS3	REV__nc|ENSG00000163755|Q969F9-2|HPS3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	482.762246	963.50994	0.39099	0.00018876	0.38353	0.00018515	0.77452	0.00037391	482.762341883094	87.497	0.85522	87.491	86.965	87.82	-0.0056152	0.018494	3.5928E-05	NaN	16.942	78	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255950	+		9272	23059	5158	5158							0.02672497310925337
FMTSTAYTNNQ	11	Unmodified	_FMTSTAYTNNQ_					0	0	0		nc|ENSG00000163531|O94856-6|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856|NFASC;ENST00000495396.5_1_1:204956439-204985664:+|nuORF;ENSG00000163531|ENST00000339876|NFASC	nc|ENSG00000163531|O94856-6|NFASC	nc|ENSG00000163531|O94856-6|NFASC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	639.3358154296875	2	639.276977	1276.5394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.782	1	92.782	92.282	93.282	0								0	0	0	0.35283	1	24690	24690		7.609	1.8771	1				9273	12797	5159	5159	12095	12095					-0.08780635201537734
FMTSTAYTNNQ	11	Unmodified	_FMTSTAYTNNQ_					0	0	0		nc|ENSG00000163531|O94856-6|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856|NFASC;ENST00000495396.5_1_1:204956439-204985664:+|nuORF;ENSG00000163531|ENST00000339876|NFASC	nc|ENSG00000163531|O94856-6|NFASC	nc|ENSG00000163531|O94856-6|NFASC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.9393920898438	2	639.276977	1276.5394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.868	1	92.868	92.368	93.368	0.00046539								0	0	0	0.33515	1	24711	24711		11.495	2.7493	1				9274	12797	5159	5159	12096	12096					-0.08780635201537734
FNALKDKF	8	Unmodified	_FNALKDKF_					0	0	0		nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1;nc|ENSG00000229089|Q5CZ79-2|ANKRD20A8P	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.30133056640625	2	491.77146	981.528367	0.39089	0.00019223	-0.27166	-0.00013359	0.11923	5.8636E-05	491.7714639247789	63.267	0.4348	63.267	63.039	63.474	0					25	15	2	0	0	0	0.34092	1	15648	15648		13.508	0.97634	1	204790			9275	8654	5160	5160	12097	12097					0.036863752771296276
FNALKDKF	8	Unmodified	_FNALKDKF_					0	0	0		nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1;nc|ENSG00000229089|Q5CZ79-2|ANKRD20A8P	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	491.77146	981.528367	0.43075	0.00021183	-0.2081	-0.00010234	0.22265	0.00010949	491.7715145132623	63.128	0.46909	63.224	63.042	63.511	0.095722	-0.021771	3.8652E-05	NaN	13.508	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200240			9276	8654	5160	5160							0.036863752771296276
FNAMFVGPGF	10	Unmodified	_FNAMFVGPGF_					0	0	0		nc|ENSG00000023041|Q9H6R6-2|ZDHHC6;ENSG00000023041|ENST00000369405|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7556762695312	2	543.757495	1085.50044	0.56554	0.00030752	-2.8014	-0.0015233	-2.2358	-0.0012158	543.7553652920957	71.244	0.39986	71.305	71.117	71.517	0.060783					22	13	3	0	0	0	0.35558	1	18123	18123		11.64	3.047	1	232200			9277	518	5161	5161	12098	12098					-0.038892709745823595
FNAMFVGPGF	10	Unmodified	_FNAMFVGPGF_					0	0	0		nc|ENSG00000023041|Q9H6R6-2|ZDHHC6;ENSG00000023041|ENST00000369405|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	543.757495	1085.50044	0.51486	0.00027996	-2.6407	-0.0014359	-2.1259	-0.001156	543.755701871512	71.356	0.4221	71.356	71.128	71.55	0	0.030135	0.00013529	NaN	11.64	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281650			9278	518	5161	5161							-0.038892709745823595
FNAMFVGPGF	10	Unmodified	_FNAMFVGPGF_					0	0	0		nc|ENSG00000023041|Q9H6R6-2|ZDHHC6;ENSG00000023041|ENST00000369405|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.757495	1085.50044	0.68742	0.00037379	-2.8711	-0.0015612	-2.1837	-0.0011874	543.7552976045725	71.342	0.32111	71.317	71.188	71.509	-0.024872	-0.0089922	-0.00011527	NaN	11.64	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281210			9279	518	5161	5161							-0.038892709745823595
FNEQRKGQRAK	11	Unmodified	_FNEQRKGQRAK_					0	0	0		nc|ENSG00000149428|Q9Y4L1-2|HYOU1;ENST00000543287.5_1_11:118919950-118926831:-|nuORF;ENSG00000149428|ENST00000617285|HYOU1	nc|ENSG00000149428|Q9Y4L1-2|HYOU1	nc|ENSG00000149428|Q9Y4L1-2|HYOU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2589416503906	3	454.584736	1360.73238	0.30556	0.0001389	0.5832	0.00026511	0.88876	0.00040402	454.5851152018178	40.635	0.96072	40.728	40.42	41.38	0.09267					95	35	5	0	0	0	0.3287	1	8820	8820		5.8681	0	1	1044600			9280	4864	5162	5162	12099	12099					0.06644287700510176
FNETLRYS	8	Unmodified	_FNETLRYS_					0	0	0		nc|ENSG00000142765|Q8IYJ3-2|SYTL1;ENSG00000142765|ENST00000616558|SYTL1	nc|ENSG00000142765|Q8IYJ3-2|SYTL1	nc|ENSG00000142765|Q8IYJ3-2|SYTL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2393798828125	2	515.253631	1028.49271	0.22906	0.00011802	-1.0565	-0.00054437	-0.82744	-0.00042634	515.2529811917129	55.376	0.48474	55.376	55.198	55.682	0					27	17	2	0	0	0	0.41758	1	13297	13297		16.942	0	1	508550			9281	4463	5163	5163	12100	12100					-0.020397069705268223
FNETLRYS	8	Unmodified	_FNETLRYS_					0	0	0		nc|ENSG00000142765|Q8IYJ3-2|SYTL1;ENSG00000142765|ENST00000616558|SYTL1	nc|ENSG00000142765|Q8IYJ3-2|SYTL1	nc|ENSG00000142765|Q8IYJ3-2|SYTL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.239501953125	2	515.253631	1028.49271	0.24144	0.0001244	-0.71738	-0.00036963	-0.47594	-0.00024523	515.2531680376696	55.606	0.44541	55.587	55.379	55.824	-0.019081					40	16	3	0	0	0	0.41758	1	13309	13309		16.942	1.0951	1	626910			9282	4463	5163	5163	12101	12101					-0.020397069705268223
FNFCFLKNIK	10	Unmodified	_FNFCFLKNIK_					0	0	0			REV__nc|ENSG00000115252|P54750-3|PDE1A	REV__nc|ENSG00000115252|P54750-3|PDE1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.32666015625	2	637.341726	1272.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.271	1	84.348	83.848	84.848	0.077095								0	0	0	0.37739	1	22077	22077		3.2813	0	1		+		9283	22958	5164	5164	12102	12102					0.04347210939044999
FNGPKIARHIF	11	Unmodified	_FNGPKIARHIF_					0	0	0			REV__ENST00000563423.2_1_15:37109670-37110018:-|nuORF	REV__ENST00000563423.2_1_15:37109670-37110018:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.9150085449219	3	433.915535	1298.72478	-0.24834	-0.00010776	-0.25383	-0.00011014	-0.50217	-0.0002179	433.9154414675476	59.649	0.57719	59.744	59.354	59.932	0.095089					34	20	2	0	0	0	0.44966	1	14533	14533		4.7159	2.0847	1	305560	+		9284	22329	5165	5165	12103	12103					0.0873618017087665
FNIFLNQL	8	Unmodified	_FNIFLNQL_					0	0	0			REV__ENSG00000198523|ENST00000357525|PLN	REV__ENSG00000198523|ENST00000357525|PLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7976989746094	2	504.779285	1007.54402	0.30242	0.00015265	-1.6414	-0.00082856	-1.339	-0.00067591	504.7794229054757	69.1	2.4316	69.172	68.459	70.891	0.071938					178	87	3	0	0	0	0.28861	1	17457	17457		32.117	0	1	1083100	+		9285	18830	5166	5166	12104	12104					0.040546617941686236
FNIHYPTFCI	10	Unmodified	_FNIHYPTFCI_					0	0	0			REV__ENSG00000078589|ENST00000171757|P2RY10	REV__ENSG00000078589|ENST00000171757|P2RY10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2337341308594	3	418.870715	1253.59032	-0.10135	-4.2454E-05	-1.3434	-0.00056271	-1.4448	-0.00060517	418.86921662224756	34.216	0.3362	34.283	34.127	34.463	0.066704					27	11	4	0	0	0	0.31746	1	6686	6686		9.544	5.6676	1	89097	+		9286	13857	5167	5167	12105	12105					-0.02633641366037409
FNIWKKLFV	9	Unmodified	_FNIWKKLFV_					0	0	0		nc|nan|Q3C1V1-2|C11orf91;ENSG00000205177|ENST00000379011|C11orf91	nc|nan|Q3C1V1-2|C11orf91	nc|nan|Q3C1V1-2|C11orf91	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8565673828125	2	597.855327	1193.6961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.606	1	89.696	89.196	90.196	0.090569								0	0	0	0.25631	1	23712	23712		4.3292	1.334	1				9287	8276	5168	5168	12106	12106					0.1070006254171858
FNIWKKLFV	9	Unmodified	_FNIWKKLFV_					0	0	0		nc|nan|Q3C1V1-2|C11orf91;ENSG00000205177|ENST00000379011|C11orf91	nc|nan|Q3C1V1-2|C11orf91	nc|nan|Q3C1V1-2|C11orf91	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8558959960938	2	597.855327	1193.6961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.503	1	93.502	93.002	94.002	-0.00051117								0	0	0	0.25631	1	24902	24902		4.3292	0.38484	1				9288	8276	5168	5168	12107	12107					0.1070006254171858
FNIWKKLFV	9	Unmodified	_FNIWKKLFV_					0	0	0		nc|nan|Q3C1V1-2|C11orf91;ENSG00000205177|ENST00000379011|C11orf91	nc|nan|Q3C1V1-2|C11orf91	nc|nan|Q3C1V1-2|C11orf91	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8558349609375	2	597.855327	1193.6961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.818	1	93.817	93.317	94.317	-0.00051117								0	0	0	0.25631	1	24998	24998		4.3292	1.0479	1				9289	8276	5168	5168	12108	12108					0.1070006254171858
FNKEYPERFIE	11	Unmodified	_FNKEYPERFIE_					0	0	0		nc|ENSG00000007350|P51854-4|TKTL1;nc|ENSG00000007350|P51854-1|TKTL1;ENSG00000007350|ENST00000369915|TKTL1	nc|ENSG00000007350|P51854-4|TKTL1	nc|ENSG00000007350|P51854-4|TKTL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.80352783203125	3	491.245386	1470.71433	0.12972	6.3724E-05	0.90705	0.00044558	1.0368	0.00050931	491.2457221579515	28.344	0.48726	28.339	28.055	28.542	-0.0042572					27	17	2	0	0	0	0.33296	1	4956	4956		2.6312	0.70373	1	161500			9290	379	5169	5169	12109	12109					-0.002198920648652347
FNKFILLHN	9	Unmodified	_FNKFILLHN_					0	0	0			REV__ENST00000278193.6_1_11:27516283-27516379:-|nuORF	REV__ENST00000278193.6_1_11:27516283-27516379:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.2904052734375	2	573.326934	1144.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.33	1	118.33	117.83	118.83	0								0	0	0	0.2672	1	30569	30569		0.52476	0	1		+		9291	19696	5170	5170	12110	12110					0.07278014985240588
FNKFLTWRAQY	11	Unmodified	_FNKFLTWRAQY_					0	0	0			REV__ENST00000360351.8_2_2:210596655-210596838:+|nuORF	REV__ENST00000360351.8_2_2:210596655-210596838:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.30133056640625	3	491.9261	1472.75647	0.39116	0.00019242	2.4891	0.0012245	2.8803	0.0014169	492.2623532512983	62.84	1.0725	62.84	62.341	63.413	0					52	39	2	0	0	0	0.33296	1	15648	15648		2.6312	0.72486	1	177300	+		9292	20253	5171	5171	12111	12111					0.039001281341825234
FNKIYIILFK	10	Unmodified	_FNKIYIILFK_					0	0	0		ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR	ENSG00000036828|ENST00000639785|CASR	ENSG00000036828|ENST00000639785|CASR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.898193359375	2	649.897192	1297.77983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.065	1	93.154	92.654	93.654	0.089195								0	0	0	0.3773	1	24770	24770		3.2813	0	1				9293	581	5172	5172	12112	12112					0.14285173918779037
FNLSVFIARK	10	Unmodified	_FNLSVFIARK_					0	0	0		nc|ENSG00000178904|Q6ZPD9-2|DPY19L3;ENSG00000178904|ENST00000392250|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.855224609375	2	597.853316	1193.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.274	1	93.361	92.861	93.861	0.08667								0	0	0	0.37739	1	24834	24834		3.2813	1.4371	1				9294	7082	5173	5173	12113	12113					0.10297973048022868
FNLSVFIARK	10	Unmodified	_FNLSVFIARK_					0	0	0		nc|ENSG00000178904|Q6ZPD9-2|DPY19L3;ENSG00000178904|ENST00000392250|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8567504882812	2	597.853316	1193.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.756	1	93.843	93.343	94.343	0.08667								0	0	0	0.37739	1	24979	24979		3.2813	0	1				9295	7082	5173	5173	12114	12114					0.10297973048022868
FNLSVFIARK	10	Unmodified	_FNLSVFIARK_					0	0	0		nc|ENSG00000178904|Q6ZPD9-2|DPY19L3;ENSG00000178904|ENST00000392250|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8563842773438	2	597.853316	1193.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.69	1	94.688	94.188	95.188	-0.0020142								0	0	0	0.37739	1	25268	25268		3.2813	0.78282	1				9296	7082	5173	5173	12115	12115					0.10297973048022868
FNNCIQIWPS	10	Unmodified	_FNNCIQIWPS_					0	0	0			REV__ENSG00000138109|ENST00000260682|CYP2C9	REV__ENSG00000138109|ENST00000260682|CYP2C9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.8874206542969	3	407.862219	1220.56483	-0.39655	-0.00016174	-3.5093	-0.0014313	-3.9058	-0.001593	407.8606477436345	13.7	0.31009	13.7	13.537	13.847	0					16	10	2	0	0	0	0.32162	1	456	456		0.15932	0.15932	1	26718	+		9297	15903	5174	5174	12116	12116					-0.03663115888457469
FNNDCGKGVW	10	Unmodified	_FNNDCGKGVW_					0	0	0			REV__nc|ENSG00000138802|O95487-2|SEC24B	REV__nc|ENSG00000138802|O95487-2|SEC24B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.8037719726562	2	570.250566	1138.48658	0.51889	0.0002959	1.1311	0.00064502	1.65	0.00094092	570.251400602085	36.221	1.1265	36.303	36.062	37.188	0.082359					94	40	4	0	0	0	0.31165	1	7475	7475		10.824	2.9138	1	1400900	+		9298	15960	5175	5175	12117	12117					-0.07712548473682546
FNNSIRQLF	9	Unmodified	_FNNSIRQLF_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.8040161132812	2	569.803823	1137.59309	0.46437	0.0002646	-0.46545	-0.00026521	-0.001078	-6.1425E-07	569.8035701935323	36.815	1.3769	36.815	36.358	37.735	0					119	48	4	0	0	0	0.23007	1	7587	7587		19.257	1.1106	1	1692900			9299	4767	5176	5176	12118	12118					0.029799500831359182
FNQMTAYM	8	Unmodified	_FNQMTAYM_					0	0	0			REV__ENST00000358550.6_1_14:72053172-72053421:+|nuORF	REV__ENST00000358550.6_1_14:72053172-72053421:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.8143310546875	2	503.212063	1004.40957	0.38324	0.00019285	-0.11476	-5.7749E-05	0.26848	0.0001351	503.71326701838586	87.111	0.23124	87.198	87.119	87.35	0.08709					12	9	2	0	0	0	0.344	1	22956	22956		0.69038	0	1	104470	+		9300	20235	5177	5177	12119	12119					-0.09245483014387901
FNSPNYPDFY	10	Unmodified	_FNSPNYPDFY_					0	0	0		nc|ENSG00000147650|Q9Y561-2|LRP12;ENSG00000147650|ENST00000276654|LRP12	nc|ENSG00000147650|Q9Y561-2|LRP12	nc|ENSG00000147650|Q9Y561-2|LRP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.84881591796875	3	421.848744	1262.5244	0.047904	2.0208E-05	-0.16818	-7.0947E-05	-0.12028	-5.0739E-05	421.84858940467456	41.657	0.80431	41.748	41.715	42.519	0.090252					53	31	2	0	0	0	0.37454	1	9013	9013		4.7159	0.52642	1	2078800			9301	4778	5178	5178	12120	12120					-0.09635759007232991
FNTPLSILHF	10	Unmodified	_FNTPLSILHF_					0	0	0		ENST00000464774.6_1_2:74685729-74686813:+|nuORF;ENST00000492047.1_1_2:74686102-74686813:+|nuORF	ENST00000464774.6_1_2:74685729-74686813:+|nuORF	ENST00000464774.6_1_2:74685729-74686813:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.7698974609375	2	594.824224	1187.63389	0.40822	0.00024282	-0.15046	-8.9495E-05	0.25777	0.00015333	594.8242944834315	51.913	0.42155	51.913	51.759	52.18	0					21	15	2	0	0	0	0.31039	1	12148	12148		13.042	0.80181	1	160030			9302	10787	5179	5179	12121	12121					0.04758291402731629
FNTPLSILHF	10	Unmodified	_FNTPLSILHF_					0	0	0		ENST00000464774.6_1_2:74685729-74686813:+|nuORF;ENST00000492047.1_1_2:74686102-74686813:+|nuORF	ENST00000464774.6_1_2:74685729-74686813:+|nuORF	ENST00000464774.6_1_2:74685729-74686813:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.7698974609375	2	594.824224	1187.63389	0.19658	0.00011693	-0.22633	-0.00013462	-0.029742	-1.7691E-05	594.8240402532984	52.103	0.34551	52.103	51.928	52.274	-0.00080872					21	12	2	0	0	0	0.31039	1	12151	12151		13.042	7.3106	1	237480			9303	10787	5179	5179	12122	12122					0.04758291402731629
FNVRQQIAK	9	Unmodified	_FNVRQQIAK_					0	0	0			REV__ENST00000367478.8_1_1:186332511-186332559:-|nuORF	REV__ENST00000367478.8_1_1:186332511-186332559:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8111572265625	2	552.31964	1102.62473	0.61092	0.00033742	-0.48612	-0.0002685	0.12479	6.8926E-05	552.3194434221278	36.891	0.56355	36.891	36.644	37.207	0					42	19	3	0	0	0	0.32733	1	7624	7624		4.756	0.42677	1	313060	+		9304	20314	5180	5180	12123	12123					0.07751942837080605
FNVRQQIAK	9	Unmodified	_FNVRQQIAK_					0	0	0			REV__ENST00000367478.8_1_1:186332511-186332559:-|nuORF	REV__ENST00000367478.8_1_1:186332511-186332559:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	552.31964	1102.62473	0.61092	0.00033742	-0.48612	-0.0002685	0.12479	6.8926E-05	552.3194434221278	36.891	0.56355	36.891	36.644	37.207	0	0.0090312	-0.00038576	NaN	4.756	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313060	+		9305	20314	5180	5180							0.07751942837080605
FNYQSKRH	8	Unmodified	_FNYQSKRH_					0	0	0			REV__ENST00000369075.7_1_10:121700107-121700140:+|nuORF	REV__ENST00000369075.7_1_10:121700107-121700140:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2611694335938	2	540.27269	1078.53083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.478	1	21.478	20.978	21.978	0								0	0	0	0.36336	1	2853	2853		8.5933	0	1		+		9306	20351	5181	5181	12124	12124					-0.005297762651935045
FPAAIEHTI	9	Unmodified	_FPAAIEHTI_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.76904296875	2	499.768917	997.523281	0.48909	0.00024443	-0.17709	-8.8503E-05	0.312	0.00015593	499.76886260387147	49.477	0.60042	49.477	49.243	49.843	0					64	21	4	0	0	0	0.00077644	3	11388	11388;11438;11490		125.62	89.58	1	1618700			9307	560	5182	5182	12125;12126;12127	12125					0.024420714145321654
FPAAIEHTI	9	Unmodified	_FPAAIEHTI_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7691345214844	2	499.768917	997.523281	0.3301	0.00016497	-0.066634	-3.3301E-05	0.26347	0.00013167	499.76893209471854	49.558	0.53495	49.602	49.342	49.877	0.044891					60	19	4	0	0	0	0.00077644	3	11385	11385;11429;11478		125.62	89.58	1	1893700			9308	560	5182	5182	12128;12129;12130	12128					0.024420714145321654
FPAAIEHTI	9	Unmodified	_FPAAIEHTI_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.76898193359375	2	499.768917	997.523281	0.24863	0.00012426	0.04718	2.3579E-05	0.2958	0.00014783	499.76893242210207	49.506	0.5929	49.538	49.268	49.861	0.032043					56	21	3	0	0	0	0.00010798	3	11429	11382;11429;11469		139.54	95.686	1	1744800			9309	560	5182	5182	12131;12132;12133	12132					0.024420714145321654
FPAAPLLTV	9	Unmodified	_FPAAPLLTV_					0	0	0		ENSG00000182087|ENST00000356663|TMEM259;nc|ENSG00000182087|Q4ZIN3-2|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7786865234375	2	464.778754	927.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.12	1	79.12	78.62	79.62	0								0	0	0	0.0062099	1	20503	20503		86.121	43.153	1				9310	7267	5183	5183	12134	12134					0.07628447425281593
FPAAPLLTV	9	Unmodified	_FPAAPLLTV_					0	0	0		ENSG00000182087|ENST00000356663|TMEM259;nc|ENSG00000182087|Q4ZIN3-2|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.77874755859375	2	464.778754	927.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.977	1	79.035	78.535	79.535	0.058151								0	0	0	0.0010795	1	20449	20449		93.883	43.028	1				9311	7267	5183	5183	12135	12135					0.07628447425281593
FPAAPLLTV	9	Unmodified	_FPAAPLLTV_					0	0	0		ENSG00000182087|ENST00000356663|TMEM259;nc|ENSG00000182087|Q4ZIN3-2|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7788391113281	2	464.778754	927.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.1	1	79.071	78.571	79.571	-0.028931								0	0	0	0.013959	1	20480	20480		74.396	23.541	1				9312	7267	5183	5183	12136	12136					0.07628447425281593
FPAELSYDF	9	Unmodified	_FPAELSYDF_					0	0	0			REV__ENSG00000168907|ENST00000397272|PLA2G4F	REV__ENSG00000168907|ENST00000397272|PLA2G4F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3004760742188	2	544.75039	1087.48623	0.66653	0.00036309	0.44336	0.00024152	1.1099	0.00060461	544.7504927270569	63.14	0.49244	63.236	62.985	63.477	0.095726					43	17	3	0	0	0	0.25291	1	15643	15643		9.3474	0.75416	1	569820	+		9313	17488	5184	5184	12137	12137					-0.05401644921903426
FPAEMVNKI	9	Oxidation (M)	_FPAEM(Oxidation (M))VNKI_		FPAEM(1)VNKI		FPAEM(77)VNKI	0	0	1		nc|ENSG00000139132|Q96M96|FGD4;ENSG00000139132|ENST00000534526|FGD4	nc|ENSG00000139132|Q96M96|FGD4	nc|ENSG00000139132|Q96M96|FGD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7760620117188	2	532.775885	1063.53722	0.55842	0.00029751	-0.053752	-2.8638E-05	0.50467	0.00026888	532.7757348359812	40.63	1.1582	40.63	40.283	41.441	0					100	42	3	0	0	0	0.011693	1	8727	8727		76.825	47.743	1	751820			9314	4207	5185	5185	12138	12138		538			0.007989808513002572
FPAEMVNKI	9	Oxidation (M)	_FPAEM(Oxidation (M))VNKI_		FPAEM(1)VNKI		FPAEM(74)VNKI	0	0	1		nc|ENSG00000139132|Q96M96|FGD4;ENSG00000139132|ENST00000534526|FGD4	nc|ENSG00000139132|Q96M96|FGD4	nc|ENSG00000139132|Q96M96|FGD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7759399414062	2	532.775885	1063.53722	0.50429	0.00026867	-0.061679	-3.2861E-05	0.44261	0.00023581	532.7757437611937	40.481	1.3354	40.574	40.123	41.459	0.09267					109	49	3	0	0	0	0.052436	1	8633	8633		74.2	48.8	1	667860			9315	4207	5185	5185	12139	12139		538			0.007989808513002572
FPAEMVNKI	9	Oxidation (M)	_FPAEM(Oxidation (M))VNKI_		FPAEM(1)VNKI		FPAEM(44)VNKI	0	0	1		nc|ENSG00000139132|Q96M96|FGD4;ENSG00000139132|ENST00000534526|FGD4	nc|ENSG00000139132|Q96M96|FGD4	nc|ENSG00000139132|Q96M96|FGD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7760009765625	2	532.775885	1063.53722	0.52525	0.00027984	-0.2224	-0.00011849	0.30286	0.00016135	532.7757001052906	40.399	1.1985	40.498	40.146	41.344	0.099407					97	43	3	0	0	0	0.14646	1	8603	8603		43.772	24.515	1	891300			9316	4207	5185	5185	12140	12140		538			0.007989808513002572
FPAFDYDTV	9	Unmodified	_FPAFDYDTV_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-2|MYO6	REV__nc|ENSG00000196586|Q9UM54-2|MYO6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.3171997070312	2	537.742565	1073.47058	0.73568	0.00039561	-1.4368	-0.00077261	-0.70108	-0.000377	537.741819798915	37.742	0.58213	37.742	37.452	38.034	0					36	20	3	0	0	0	0.24913	1	7717	7717		7.9102	0	1	202680	+		9317	18665	5186	5186	12141	12141					-0.06321931438969841
FPAHPLAHWG	10	Unmodified	_FPAHPLAHWG_					0	0	0		ENST00000307076.8_1_3:52568864-52569062:-|nuORF	ENST00000307076.8_1_3:52568864-52569062:-|nuORF	ENST00000307076.8_1_3:52568864-52569062:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.306396484375	2	566.787976	1131.5614	0.42396	0.00024029	0.91565	0.00051898	1.3396	0.00075927	566.7884883767866	31.967	0.91947	31.967	31.772	32.692	0					61	32	2	0	0	0	0.26524	1	6157	6157		24.674	3.1369	1	580820			9318	9276	5187	5187	12142	12142					0.0008800211983270856
FPAHRAVL	8	Unmodified	_FPAHRAVL_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1;ENSG00000179627|ENST00000342537|ZBTB42;nc|ENSG00000162413|Q9UJP4-2|KLHL21;ENSG00000162413|ENST00000377658|KLHL21	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.30133056640625	2	455.766512	909.518471	0.02025	9.2294E-06	-0.20144	-9.1809E-05	-0.18119	-8.258E-05	455.76613419042695	28.537	0.56422	28.537	28.333	28.898	0					25	19	2	0	0	0	0.29855	1	4994	4994		32.117	11.246	1	101150			9319	1533	5188	5188	12143	12143					0.06009232062422143
FPAKKRALEL	10	Unmodified	_FPAKKRALEL_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8612670898438	2	586.861141	1171.70773	0.30128	0.00017681	0.17246	0.00010121	0.47373	0.00027802	586.8611611479954	28.717	1.2412	28.717	28.31	29.551	0					65	44	2	0	0	0	0.10152	1	5005	5005		47.732	27.317	1	175440			9320	2497	5189	5189	12144	12144					0.12874259565069224
FPAKKRALEL	10	Unmodified	_FPAKKRALEL_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8615112304688	2	586.861141	1171.70773	0.18795	0.0001103	0.28891	0.00016955	0.47686	0.00027985	586.8612018617548	28.625	0.84048	28.621	28.333	29.174	-0.0042572					61	29	3	0	0	0	0.21589	1	4997	4997		30.703	14.856	1	194460			9321	2497	5189	5189	12145	12145					0.12874259565069224
FPAKKRALEL	10	Unmodified	_FPAKKRALEL_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8611450195312	2	586.861141	1171.70773	0.14948	8.7723E-05	0.27056	0.00015878	0.42004	0.0002465	586.8612344388342	28.601	1.1721	28.602	28.322	29.494	0.00046921					64	41	2	0	0	0	0.16374	1	5000	5000		37.075	16.66	1	189630			9322	2497	5189	5189	12146	12146					0.12874259565069224
FPALGRFLV	9	Unmodified	_FPALGRFLV_					0	0	0			REV__ENST00000395473.6_2_17:25976035-25976554:+|nuORF	REV__ENST00000395473.6_2_17:25976035-25976554:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.77154541015625	2	510.30547	1018.59639	0.55859	0.00028505	-4.0254	-0.0020542	-3.4668	-0.0017691	510.30170134748073	55.684	0.10197	55.755	55.675	55.777	0.070885					5	3	2	0	0	0	0.24913	1	13298	13298		12.532	1.4171	1	156420	+		9323	20634	5190	5190	12147	12147					0.08783244927792566
FPANVMDVI	9	Oxidation (M)	_FPANVM(Oxidation (M))DVI_		FPANVM(1)DVI		FPANVM(140)DVI	0	0	1		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2555236816406	2	511.254785	1020.49502	0.3609	0.00018451	-0.44719	-0.00022863	-0.086298	-4.412E-05	511.25506538325567	66.842	3.5857	66.842	65.899	69.485	0					361	128	5	0	0	0	0.00012782	10	16779	16562;16604;16648;16693;16735;16779;16820;16864;16910;16954		136.33	96.376	1	23865000			9324	2205	5191	5191	12148;12149;12150;12151;12152;12153;12154;12155;12156;12157	12153		272			-0.014409945570719174
FPANVMDVI	9	Oxidation (M)	_FPANVM(Oxidation (M))DVI_		FPANVM(1)DVI		FPANVM(120)DVI	0	0	1		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2554016113281	2	511.254785	1020.49502	0.2809	0.00014361	-0.37267	-0.00019053	-0.091776	-4.6921E-05	511.2550907924801	66.74	4.6432	66.824	65.648	70.291	0.083832					454	167	5	0	0	0	0.00094673	10	16661	16522;16567;16610;16661;16710;16760;16803;16848;16891;16944		123.45	91.145	1	23409000			9325	2205	5191	5191	12158;12159;12160;12161;12162;12163;12164;12165;12166;12167	12161		272			-0.014409945570719174
FPANVMDVI	9	Oxidation (M)	_FPANVM(Oxidation (M))DVI_		FPANVM(1)DVI		FPANVM(110)DVI	0	0	1		ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.25555419921875	2	511.254785	1020.49502	0.12105	6.1886E-05	-0.1821	-9.3102E-05	-0.061058	-3.1216E-05	511.25518850940915	66.84	4.401	66.827	65.824	70.225	-0.013596					402	157	5	0	0	0	0.0018995	10	16774	16547;16593;16634;16676;16724;16774;16816;16863;16910;17004		111.29	71.33	1	24424000			9326	2205	5191	5191	12168;12169;12170;12171;12172;12173;12174;12175;12176;12177	12173		272			-0.014409945570719174
FPAPLAQI	8	Unmodified	_FPAPLAQI_					0	0	0		ENST00000534709.1_1_11:117152603-117155864:+|nuORF;nc|ENSG00000167257|Q8ND24-2|RNF214;ENSG00000167257|ENST00000300650|RNF214	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.7501525878906	2	428.749996	855.485439	-0.061804	-2.6499E-05	-0.92257	-0.00039555	-0.98438	-0.00042205	428.7499864084434	70.475	1.6717	70.475	69.398	71.07	0					102	60	3	0	0	0	0.2463	1	17828	17828		49.669	19.444	1	481720			9327	6162	5192	5192	12178	12178					0.05191605219692974
FPAPLAQI	8	Unmodified	_FPAPLAQI_					0	0	0		ENST00000534709.1_1_11:117152603-117155864:+|nuORF;nc|ENSG00000167257|Q8ND24-2|RNF214;ENSG00000167257|ENST00000300650|RNF214	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.7499694824219	2	428.749996	855.485439	-0.044451	-1.9058E-05	-0.65304	-0.00027999	-0.69749	-0.00029905	428.75001453039755	70.415	1.1384	70.476	69.878	71.017	0.060783					80	40	3	0	0	0	0.065483	2	17816	17816;17862		70.865	27.897	1	464240			9328	6162	5192	5192	12179;12180	12179					0.05191605219692974
FPAPLAQI	8	Unmodified	_FPAPLAQI_					0	0	0		ENST00000534709.1_1_11:117152603-117155864:+|nuORF;nc|ENSG00000167257|Q8ND24-2|RNF214;ENSG00000167257|ENST00000300650|RNF214	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.7499694824219	2	428.749996	855.485439	-0.01167	-5.0034E-06	-1.4032	-0.00060163	-1.4149	-0.00060663	428.7499917629897	70.447	1.3471	70.422	69.486	70.833	-0.024872					74	48	2	0	0	0	0.29134	1	17827	17827		26.341	5.4701	1	518980			9329	6162	5192	5192	12181	12181					0.05191605219692974
FPAPTPKNI	9	Unmodified	_FPAPTPKNI_					0	0	0		ENSG00000112992|ENST00000344920|NNT;ENST00000506893.1_1_5:43644868-43645650:+|nuORF	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.31610107421875	2	492.779285	983.544017	0.35502	0.00017495	-0.2643	-0.00013024	0.090728	4.4709E-05	492.77919745673796	43.286	0.32621	43.286	43.062	43.388	0					18	11	2	0	0	0	0.24289	1	9481	9481		18.146	1.0335	1	137730			9330	2470	5193	5193	12182	12182					0.051586617941893564
FPAPTPKNI	9	Unmodified	_FPAPTPKNI_					0	0	0		ENSG00000112992|ENST00000344920|NNT;ENST00000506893.1_1_5:43644868-43645650:+|nuORF	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.31622314453125	2	492.779285	983.544017	0.52713	0.00025976	-0.43978	-0.00021672	0.087347	4.3043E-05	492.7790442366642	43.185	0.43021	43.263	42.995	43.425	0.077515					20	15	2	0	0	0	0.23784	1	9445	9445		19.257	1.1106	1	187420			9331	2470	5193	5193	12183	12183					0.051586617941893564
FPAPTPKNI	9	Unmodified	_FPAPTPKNI_					0	0	0		ENSG00000112992|ENST00000344920|NNT;ENST00000506893.1_1_5:43644868-43645650:+|nuORF	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.31610107421875	2	492.779285	983.544017	0.24177	0.00011914	-0.25291	-0.00012463	-0.011145	-5.492E-06	492.7791131598851	43.107	0.51408	43.191	42.896	43.41	0.083996					29	18	2	0	0	0	0.18936	1	9421	9421		32.786	1.5173	1	171300			9332	2470	5193	5193	12184	12184					0.051586617941893564
FPASQKLIS	9	Unmodified	_FPASQKLIS_					0	0	0		ENSG00000256683|ENST00000243644|ZNF350	ENSG00000256683|ENST00000243644|ZNF350	ENSG00000256683|ENST00000243644|ZNF350	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.8033752441406	2	495.784567	989.554582	0.4195	0.00020798	0.34838	0.00017272	0.76788	0.0003807	495.7849026073028	68.646	0.49085	68.627	68.458	68.949	-0.019157					23	17	2	0	0	0	0.24739	1	17322	17322		4.756	0	1	187810			9333	8629	5194	5194	12185	12185					0.05938644448622199
FPDIHRYPP	9	Unmodified	_FPDIHRYPP_					0	0	0			REV__ENST00000411578.6_1_3:49924742-49933170:-|nuORF	REV__ENST00000411578.6_1_3:49924742-49933170:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.279541015625	2	571.293091	1140.57163	0.51116	0.00029202	4.0199	0.0022965	4.531	0.0025886	571.7946424012126	54.13	0.15681	54.194	54.115	54.272	0.063202					7	5	2	0	0	0	0.22061	1	12856	12856		24.021	11.489	1	122660	+		9334	17124	5195	5195	12186	12186					0.0069656505440889305
FPDPNVKYV	9	Unmodified	_FPDPNVKYV_					0	0	0		ENST00000529476.1_1_1:161011414-161013065:-|nuORF;USF1|p.G130Vfs*33|1|0.21|ENSG00000158773|chr1:161041734-161041734|C/-|frameshift_variant;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	ENST00000529476.1_1_1:161011414-161013065:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7817993164062	2	539.782025	1077.5495	0.68455	0.00036951	-0.80165	-0.00043272	-0.1171	-6.3206E-05	539.7814832428335	50.227	0.8112	50.227	49.843	50.654	0					83	29	4	0	0	0	0.0054984	3	11680	11632;11680;11741		86.332	48.156	1	1083700			9335	5372	5196	5196	12187;12188;12189	12188					0.013823405859739069
FPEFVRTL	8	Unmodified	_FPEFVRTL_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7794494628906	2	504.779285	1007.54402	0.23527	0.00011876	-1.1166	-0.00056363	-0.88132	-0.00044487	504.7793970938542	69.242	2.1371	69.242	68.736	70.873	0					133	77	2	0	0	0	0.13814	1	17465	17465		53.833	17.706	1	1001000	+		9336	18498	5197	5197	12190	12190					0.04054661794191361
FPEFVRTL	8	Unmodified	_FPEFVRTL_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.3238220214844	2	504.779285	1007.54402	0.23527	0.00011876	-1.1166	-0.00056363	-0.88132	-0.00044487	504.7793970938542	69.242	2.1371	69.242	68.736	70.873	0					133	77	2	0	0	0	0.31088	1	17360	17360		28.487	9.0478	1	1001000	+		9337	18498	5197	5197	12191	12191					0.04054661794191361
FPEGHFPENF	10	Unmodified	_FPEGHFPENF_					0	0	0		ENSG00000080573|ENST00000264828|COL5A3;COL5A3|p.P1369Hfs*25|1|0.28|ENSG00000080573|chr19:9969395-9969396|-/GT|frameshift_variant	ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5692443847656	3	407.517218	1219.52982	-0.3579	-0.00014585	1.2498	0.0005093	0.89185	0.00036345	407.51755699551376	15.091	0.71742	15.091	14.873	15.591	0					37	24	2	0	0	0	0.32009	1	1042	1042		1.9064	0	1	35154			9338	1160	5198	5198	12192	12192					-0.0711603542474677
FPEGHFPENF	10	Unmodified	_FPEGHFPENF_					0	0	0		ENSG00000080573|ENST00000264828|COL5A3;COL5A3|p.P1369Hfs*25|1|0.28|ENSG00000080573|chr19:9969395-9969396|-/GT|frameshift_variant	ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.56915283203125	3	407.517218	1219.52982	-0.22035	-8.9795E-05	0.73539	0.00029968	0.51504	0.00020989	407.51752384482256	15.201	0.71341	15.091	14.955	15.668	-0.10981					54	24	3	0	0	0	0.32009	1	1085	1085		1.9064	0	1	50852			9339	1160	5198	5198	12193	12193					-0.0711603542474677
FPEGHFPENF	10	Unmodified	_FPEGHFPENF_					0	0	0		ENSG00000080573|ENST00000264828|COL5A3;COL5A3|p.P1369Hfs*25|1|0.28|ENSG00000080573|chr19:9969395-9969396|-/GT|frameshift_variant	ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5691223144531	3	407.517218	1219.52982	-0.28161	-0.00011476	0.88197	0.00035942	0.60036	0.00024466	407.51749298916087	15.24	0.59536	15.176	15.041	15.636	-0.064414					38	19	3	0	0	0	0.32009	1	1074	1074		1.9064	0	1	58088			9340	1160	5198	5198	12194	12194					-0.0711603542474677
FPEPAPCSTF	10	Unmodified	_FPEPAPCSTF_					0	0	0			REV__ENSG00000182095|ENST00000430969|TNRC18	REV__ENSG00000182095|ENST00000430969|TNRC18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2446899414062	2	548.244418	1094.47428	0.48775	0.00026741	0.4513	0.00024742	0.93905	0.00051483	548.2445177121378	49.107	0.7338	49.152	48.935	49.669	0.044891					77	26	4	0	0	0	0.34325	1	11258	11258		13.906	1.3745	1	1369500	+		9341	18177	5199	5199	12195	12195					-0.0691758493674115
FPETIRLL	8	Unmodified	_FPETIRLL_					0	0	0		ENST00000449193.6_1_10:21812614-21812767:-|nuORF	ENST00000449193.6_1_10:21812614-21812767:-|nuORF	ENST00000449193.6_1_10:21812614-21812767:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2869873046875	2	494.794935	987.575317	0.06756	3.3428E-05	-1.3884	-0.00068696	-1.3208	-0.00065353	494.79416267940985	65.085	0.282	65.085	64.96	65.242	0					12	9	2	0	0	0	0.39956	1	16231	16231		19.439	1.304	1	73695			9342	10628	5200	5200	12196	12196					0.08103234828286077
FPEVRFPAPRF	11	Unmodified	_FPEVRFPAPRF_					0	0	0		ENST00000542575.6_2_19:47291354-47291816:-|nuORF	ENST00000542575.6_2_19:47291354-47291816:-|nuORF	ENST00000542575.6_2_19:47291354-47291816:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.9676818847656	3	454.915423	1361.72444	0.092648	4.2147E-05	-2.5194	-0.0011461	-2.4268	-0.001104	455.2488625039712	38.058	0.36749	38.156	37.981	38.348	0.097527					16	12	2	0	0	0	0.33146	1	7851	7851		2.2527	0	1	154240			9343	11733	5201	5201	12197	12197					0.058047604510193196
FPEVRSLTL	9	Unmodified	_FPEVRSLTL_					0	0	0		nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF;nc|ENSG00000115970|Q6YHU6-4|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.30322265625	2	531.303124	1060.5917	0.33551	0.00017825	-0.047694	-2.534E-05	0.28781	0.00015291	531.3031312880585	66.986	0.95473	67.07	66.738	67.693	0.083832					71	33	3	0	0	0	0.19747	1	16844	16844		24.021	2.4836	1	1621700			9344	2692	5202	5202	12198	12198					0.06382315994369492
FPEVRSLTL	9	Unmodified	_FPEVRSLTL_					0	0	0		nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF;nc|ENSG00000115970|Q6YHU6-4|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8043823242188	2	531.303124	1060.5917	0.28892	0.00015351	-0.0063021	-3.3483E-06	0.28262	0.00015016	531.3031412009042	67.072	0.74419	67.055	66.762	67.506	-0.016296					61	25	3	0	0	0	0.17277	1	16907	16907		27.629	3.6082	1	1636100			9345	2692	5202	5202	12199	12199					0.06382315994369492
FPFCCLFF	8	Unmodified	_FPFCCLFF_					0	0	0			REV__ENST00000288986.6_2_3:136667407-136667713:+|nuORF	REV__ENST00000288986.6_2_3:136667407-136667713:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.81298828125	2	512.226985	1022.43942	0.45291	0.00023199	0.87275	0.00044705	1.3257	0.00067904	512.2272292861496	66.099	0.73949	66.183	65.779	66.518	0.083832					54	26	3	0	0	0	0.31651	1	16489	16489		24.21	0	1	432660	+		9346	19744	5203	5203	12200	12200					-0.0709049927839942
FPFELVKME	9	Unmodified	_FPFELVKME_					0	0	0		nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;ENST00000591701.5_1_19:10887861-10906203:+|nuORF	nc|ENSG00000106976|Q05193-5|DNM1	nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2803344726562	2	570.293911	1138.57327	0.3751	0.00021392	0.96954	0.00055293	1.3446	0.00076684	570.2945530252616	53.277	1.4729	53.277	52.849	54.322	0					140	54	4	0	0	0	0.04299	4	12628	12577;12628;12676;12724		55.503	0	1	5034600			9347	1141	5204	5204	12201;12202;12203;12204	12202					0.009524380281618505
FPFELVKME	9	Unmodified	_FPFELVKME_					0	0	0		nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;ENST00000591701.5_1_19:10887861-10906203:+|nuORF	nc|ENSG00000106976|Q05193-5|DNM1	nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2800903320312	2	570.293911	1138.57327	0.43892	0.00025031	0.98113	0.00055953	1.4201	0.00080985	570.2945474590931	53.255	1.493	53.311	52.772	54.265	0.056259					136	55	4	0	0	0	0.064268	4	12652	12530;12603;12652;12700		47.594	0	1	5309900			9348	1141	5204	5204	12205;12206;12207;12208	12207					0.009524380281618505
FPFGFFTTV	9	Unmodified	_FPFGFFTTV_					0	0	0		ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.835205078125	2	531.768386	1061.52222	0.23905	0.00012712	-0.56847	-0.00030229	-0.32942	-0.00017517	531.7683335519116	96.269	0.74006	96.269	96.01	96.75	0					168	71	4	0	0	0	0.17611	1	25815	25815		34.102	12.356	1	250430			9349	8214	5205	5205	12209	12209					-0.006081429543883132
FPFGFFTTV	9	Unmodified	_FPFGFFTTV_					0	0	0		ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7684936523438	2	531.768386	1061.52222	0.23819	0.00012666	-0.63641	-0.00033842	-0.39822	-0.00021176	531.7683167761297	96.129	0.67355	96.206	95.972	96.646	0.077415					172	65	4	0	0	0	0.17787	1	25685	25685		26.884	11.036	1	354630			9350	8214	5205	5205	12210	12210					-0.006081429543883132
FPFGFFTTV	9	Unmodified	_FPFGFFTTV_					0	0	0		ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	ENSG00000204308|ENST00000375094|RNF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7687377929688	2	531.768386	1061.52222	0.51448	0.00027358	-0.99834	-0.00053088	-0.48385	-0.0002573	531.7681497482957	96.309	0.77293	96.305	95.922	96.695	-0.0038223					196	75	4	0	0	0	0.17787	1	25730	25730		26.884	11.036	1	488340			9351	8214	5205	5205	12211	12211					-0.006081429543883132
FPFGKIGTV	9	Unmodified	_FPFGKIGTV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2764587402344	2	483.276378	964.538203	0.22729	0.00010984	0.26147	0.00012636	0.48876	0.00023621	483.2763900900203	58.816	1.2356	58.816	58.439	59.675	0					124	42	4	0	0	0	9.2305E-05	3	14293	14240;14293;14342		142.08	87.306	1	2971300			9352	4833	5206	5206	12212;12213;12214	12213					0.05451563282531424
FPFGKIGTV	9	Unmodified	_FPFGKIGTV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2764587402344	2	483.276378	964.538203	0.28552	0.00013798	0.11497	5.5563E-05	0.40049	0.00019355	483.276347135828	58.715	1.4062	58.807	58.418	59.824	0.091301					141	49	4	0	0	0	9.2305E-05	4	14226	14226;14277;14331;14380		142.08	93.734	1	3172400			9353	4833	5206	5206	12215;12216;12217;12218	12215					0.05451563282531424
FPFGKIGTV	9	Unmodified	_FPFGKIGTV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2765197753906	2	483.276378	964.538203	0.38738	0.00018721	0.063964	3.0912E-05	0.45134	0.00021812	483.276289794467	58.821	1.2906	58.807	58.47	59.76	-0.014267					120	45	4	0	0	0	9.2305E-05	3	14278	14278;14330;14382		142.08	93.734	1	3212600			9354	4833	5206	5206	12219;12220;12221	12219					0.05451563282531424
FPFHFVEV	8	Unmodified	_FPFHFVEV_					0	0	0		nc|ENSG00000141562|Q9UHQ1-4|NARF;nc|ENSG00000141562|Q9UHQ1-3|NARF;ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;ENST00000577812.5_1_17:80442656-80446030:+|nuORF	nc|ENSG00000141562|Q9UHQ1-4|NARF	nc|ENSG00000141562|Q9UHQ1-4|NARF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2625427246094	2	511.260728	1020.5069	0.34381	0.00017578	2.4059	0.00123	2.7497	0.0014058	511.26239144653385	70.331	0.71888	70.331	70.049	70.768	0					58	25	3	0	0	0	0.049524	2	17817	17817;17877		78.445	38.487	1	758220			9355	4394	5207	5207	12222;12223	12222					-0.0025300975156596905
FPFHFVEV	8	Unmodified	_FPFHFVEV_					0	0	0		nc|ENSG00000141562|Q9UHQ1-4|NARF;nc|ENSG00000141562|Q9UHQ1-3|NARF;ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;ENST00000577812.5_1_17:80442656-80446030:+|nuORF	nc|ENSG00000141562|Q9UHQ1-4|NARF	nc|ENSG00000141562|Q9UHQ1-4|NARF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2624206542969	2	511.260728	1020.5069	0.28714	0.0001468	2.4016	0.0012278	2.6887	0.0013746	511.2623183788458	70.335	0.70186	70.396	70.07	70.772	0.06086					60	24	3	0	0	0	0.024389	1	17810	17810		96.119	55.67	1	845210			9356	4394	5207	5207	12224	12224					-0.0025300975156596905
FPFHFVEV	8	Unmodified	_FPFHFVEV_					0	0	0		nc|ENSG00000141562|Q9UHQ1-4|NARF;nc|ENSG00000141562|Q9UHQ1-3|NARF;ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;ENST00000577812.5_1_17:80442656-80446030:+|nuORF	nc|ENSG00000141562|Q9UHQ1-4|NARF	nc|ENSG00000141562|Q9UHQ1-4|NARF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.26220703125	2	511.260728	1020.5069	0.2879	0.00014719	2.5412	0.0012992	2.8291	0.0014464	511.2624518231405	70.423	0.61151	70.398	70.079	70.69	-0.024864					56	21	3	0	0	0	0.065483	2	17799	17799;17845		70.865	30.907	1	973140			9357	4394	5207	5207	12225;12226	12225					-0.0025300975156596905
FPFHRLVT	8	Unmodified	_FPFHRLVT_					0	0	0			REV__ENST00000457361.5_1_2:213869570-213869690:-|nuORF	REV__ENST00000457361.5_1_2:213869570-213869690:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.30218505859375	2	508.787444	1015.56034	0.44217	0.00022497	0.15459	7.8656E-05	0.59676	0.00030362	508.78738433467834	44.304	0.59098	44.373	44.174	44.765	0.068573					33	21	2	0	0	0	0.30503	1	9758	9758		30.225	3.8835	1	226190	+		9358	21182	5208	5208	12227	12227					0.05317787750959724
FPFHRLVT	8	Unmodified	_FPFHRLVT_					0	0	0			REV__ENST00000457361.5_1_2:213869570-213869690:-|nuORF	REV__ENST00000457361.5_1_2:213869570-213869690:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8038024902344	2	508.787444	1015.56034	0.30735	0.00015638	0.33285	0.00016935	0.64021	0.00032573	508.78740201167597	44.271	0.54687	44.346	44.122	44.669	0.075047					30	19	2	0	0	0	0.33441	1	9746	9746		26.884	3.7352	1	150340	+		9359	21182	5208	5208	12228	12228					0.05317787750959724
FPFKPPQR	8	Unmodified	_FPFKPPQR_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3083801269531	2	508.787444	1015.56034	0.50911	0.00025903	0.040727	2.0722E-05	0.54984	0.00027975	508.7871160640354	44.442	0.59706	44.442	44.232	44.829	0					31	21	2	0	0	0	0.28969	1	9925	9925		36.044	15.591	1	160790			9360	3441	5209	5209	12229	12229					0.05317787750948355
FPFKPPQR	8	Unmodified	_FPFKPPQR_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.30230712890625	2	508.787444	1015.56034	0.30735	0.00015638	0.33285	0.00016935	0.64021	0.00032573	508.78740201167597	44.271	0.54687	44.346	44.122	44.669	0.075047					30	19	2	0	0	0	0.27344	1	9777	9777		34.102	8.7031	1	150340			9361	3441	5209	5209	12230	12230					0.05317787750948355
FPFKPPSI	8	Unmodified	_FPFKPPSI_					0	0	0		ENST00000464036.5_1_1:1190585-1197670:-|nuORF;nc|ENSG00000160087|Q8N2K1-2|UBE2J2;ENSG00000160087|ENST00000349431|UBE2J2;nc|ENSG00000160087|Q8N2K1-3|UBE2J2	ENST00000464036.5_1_1:1190585-1197670:-|nuORF	ENST00000464036.5_1_1:1190585-1197670:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.76556396484375	2	466.765646	931.516739	0.21533	0.00010051	0.43204	0.00020166	0.64737	0.00030217	466.7655035942174	61.029	1.2104	61.029	60.441	61.652	0					88	44	3	0	0	0	0.013309	3	14911	14861;14911;14961		111.29	29.159	1	2715700			9362	5436	5210	5210	12231;12232;12233	12232					0.048241782538070765
FPFKPPSI	8	Unmodified	_FPFKPPSI_					0	0	0		ENST00000464036.5_1_1:1190585-1197670:-|nuORF;nc|ENSG00000160087|Q8N2K1-2|UBE2J2;ENSG00000160087|ENST00000349431|UBE2J2;nc|ENSG00000160087|Q8N2K1-3|UBE2J2	ENST00000464036.5_1_1:1190585-1197670:-|nuORF	ENST00000464036.5_1_1:1190585-1197670:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.76556396484375	2	466.765646	931.516739	0.21892	0.00010218	0.22977	0.00010725	0.44868	0.00020943	466.7655494407847	60.877	1.322	60.974	60.133	61.455	0.096985					92	48	3	0	0	0	0.013309	3	14873	14819;14873;14930		111.29	32.413	1	3250600			9363	5436	5210	5210	12234;12235;12236	12235					0.048241782538070765
FPFKPPSI	8	Unmodified	_FPFKPPSI_					0	0	0		ENST00000464036.5_1_1:1190585-1197670:-|nuORF;nc|ENSG00000160087|Q8N2K1-2|UBE2J2;ENSG00000160087|ENST00000349431|UBE2J2;nc|ENSG00000160087|Q8N2K1-3|UBE2J2	ENST00000464036.5_1_1:1190585-1197670:-|nuORF	ENST00000464036.5_1_1:1190585-1197670:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7654724121094	2	466.765646	931.516739	0.42597	0.00019883	0.29051	0.0001356	0.71648	0.00033443	466.76545256484985	61.005	1.4498	60.996	60.249	61.699	-0.0094566					93	53	3	0	0	0	0.027083	4	14839	14839;14884;14932;14983		92.491	32.696	1	3352200			9364	5436	5210	5210	12237;12238;12239;12240	12237					0.048241782538070765
FPFKTKEI	8	Unmodified	_FPFKTKEI_					0	0	0		nc|ENSG00000099834|Q9HBB8-2|CDHR5;nc|ENSG00000099834|Q9HBB8-4|CDHR5;ENSG00000099834|ENST00000397542|CDHR5	nc|ENSG00000099834|Q9HBB8-2|CDHR5	nc|ENSG00000099834|Q9HBB8-2|CDHR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7616271972656	2	505.289485	1008.56442	1.0049	0.00050776	-0.52354	-0.00026454	0.48135	0.00024322	505.289168685654	56.563	0.53881	56.544	56.326	56.865	-0.019081					34	19	2	0	0	0	0.34185	1	13679	13679		10.183	5.8542	1	581980			9365	1499	5211	5211	12241	12241					0.060478324539985806
FPFLGPCLI	9	Unmodified	_FPFLGPCLI_					0	0	0		ENST00000271324.5_1_1:111441906-111442017:+|nuORF	ENST00000271324.5_1_1:111441906-111442017:+|nuORF	ENST00000271324.5_1_1:111441906-111442017:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.3106994628906	2	503.775157	1005.53576	0.40195	0.00020249	4.1578	0.0020946	4.5598	0.0022971	503.77683071178836	63.459	0.46611	63.459	63.256	63.722	0					25	16	2	0	0	0	0.11279	1	15748	15748		36.466	12.256	1	220800			9366	9082	5212	5212	12242	12242					0.03321391553208741
FPFLGPCLI	9	Unmodified	_FPFLGPCLI_					0	0	0		ENST00000271324.5_1_1:111441906-111442017:+|nuORF	ENST00000271324.5_1_1:111441906-111442017:+|nuORF	ENST00000271324.5_1_1:111441906-111442017:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.3109436035156	2	503.775157	1005.53576	0.42387	0.00021353	4.0857	0.0020583	4.5096	0.0022718	504.279218101615	63.335	0.42204	63.431	63.228	63.65	0.095726					24	14	2	0	0	0	0.15605	1	15695	15695		28.173	3.9633	1	186300			9367	9082	5212	5212	12243	12243					0.03321391553208741
FPFLGPCLI	9	Unmodified	_FPFLGPCLI_					0	0	0		ENST00000271324.5_1_1:111441906-111442017:+|nuORF	ENST00000271324.5_1_1:111441906-111442017:+|nuORF	ENST00000271324.5_1_1:111441906-111442017:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.3108215332031	2	503.775157	1005.53576	0.43715	0.00022023	3.8385	0.0019337	4.2757	0.002154	503.7768567954595	63.394	0.47356	63.385	63.217	63.691	-0.0085564					23	16	2	0	0	0	0.15605	1	15740	15740		28.173	3.9633	1	173980			9368	9082	5212	5212	12244	12244					0.03321391553208741
FPFLQEYTV	9	Unmodified	_FPFLQEYTV_					0	0	0		nc|ENSG00000170899|O15217-2|GSTA4;ENSG00000170899|ENST00000370963|GSTA4	nc|ENSG00000170899|O15217-2|GSTA4	nc|ENSG00000170899|O15217-2|GSTA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.28955078125	2	572.289682	1142.56481	0.39381	0.00022537	-0.76791	-0.00043947	-0.3741	-0.00021409	572.2894798449069	82.705	0.96535	82.705	82.313	83.279	0					76	36	3	0	0	0	0.069366	1	21614	21614		45.7	26.443	1	254220			9369	6492	5213	5213	12245	12245					-0.0007679261682369543
FPFLQEYTV	9	Unmodified	_FPFLQEYTV_					0	0	0		nc|ENSG00000170899|O15217-2|GSTA4;ENSG00000170899|ENST00000370963|GSTA4	nc|ENSG00000170899|O15217-2|GSTA4	nc|ENSG00000170899|O15217-2|GSTA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.289794921875	2	572.289682	1142.56481	0.43468	0.00024876	-0.4379	-0.00025061	-0.0032245	-1.8454E-06	572.2895445420147	82.576	1.1779	82.649	82.332	83.51	0.073097					95	45	3	0	0	0	0.17277	1	21531	21531		27.629	4.4804	1	367480			9370	6492	5213	5213	12246	12246					-0.0007679261682369543
FPFLQEYTV	9	Unmodified	_FPFLQEYTV_					0	0	0		nc|ENSG00000170899|O15217-2|GSTA4;ENSG00000170899|ENST00000370963|GSTA4	nc|ENSG00000170899|O15217-2|GSTA4	nc|ENSG00000170899|O15217-2|GSTA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2898559570312	2	572.289682	1142.56481	0.38849	0.00022233	-0.52624	-0.00030116	-0.13775	-7.8833E-05	572.2894610253171	82.751	1.3551	82.731	82.302	83.657	-0.020584					110	54	3	0	0	0	0.016723	1	21599	21599		69.105	29.148	1	348850			9371	6492	5213	5213	12247	12247					-0.0007679261682369543
FPFNGAVYQ	9	Unmodified	_FPFNGAVYQ_					0	0	0			REV__ENSG00000186766|ENST00000388920|FOXI2	REV__ENSG00000186766|ENST00000388920|FOXI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.245849609375	2	521.753267	1041.49198	0.3461	0.00018058	-1.0951	-0.00057139	-0.74904	-0.00039081	522.2554446133797	67.134	0.50128	67.212	66.986	67.488	0.078041					35	17	3	0	0	0	0.24581	1	16836	16836		16.942	2.104	1	153810	+		9372	18466	5214	5214	12248	12248					-0.027105016195719145
FPFPKPALI	9	Unmodified	_FPFPKPALI_					0	0	0		ENST00000490457.5_1_3:40567331-40615968:+|nuORF;nc|ENSG00000172888|Q6ZSS3-2|ZNF621;ENSG00000182983|ENST00000440367|ZNF662;ENSG00000172888|ENST00000339296|ZNF621;nc|ENSG00000182983|Q6ZS27-3|ZNF662	ENST00000490457.5_1_3:40567331-40615968:+|nuORF	ENST00000490457.5_1_3:40567331-40615968:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.310302734375	2	515.310221	1028.60589	0.23932	0.00012332	-0.2208	-0.00011378	0.018518	9.5426E-06	515.3099877086468	69.908	1.2358	69.908	69.037	70.273	0					114	44	4	0	0	0	0.044952	3	17677	17630;17677;17792		54.774	26.279	1	1469400			9373	6669	5215	5215	12249;12250;12251	12250					0.0927301321332834
FPFPKPALI	9	Unmodified	_FPFPKPALI_					0	0	0		ENST00000490457.5_1_3:40567331-40615968:+|nuORF;nc|ENSG00000172888|Q6ZSS3-2|ZNF621;ENSG00000182983|ENST00000440367|ZNF662;ENSG00000172888|ENST00000339296|ZNF621;nc|ENSG00000182983|Q6ZS27-3|ZNF662	ENST00000490457.5_1_3:40567331-40615968:+|nuORF	ENST00000490457.5_1_3:40567331-40615968:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.31005859375	2	515.310221	1028.60589	0.14858	7.6564E-05	-0.25383	-0.0001308	-0.10525	-5.4235E-05	515.3099672706179	69.873	1.2662	69.939	69.066	70.332	0.06604					117	44	4	0	0	0	0.062246	1	17607	17607		48.346	24.556	1	1454000			9374	6669	5215	5215	12252	12252					0.0927301321332834
FPFPKPALI	9	Unmodified	_FPFPKPALI_					0	0	0		ENST00000490457.5_1_3:40567331-40615968:+|nuORF;nc|ENSG00000172888|Q6ZSS3-2|ZNF621;ENSG00000182983|ENST00000440367|ZNF662;ENSG00000172888|ENST00000339296|ZNF621;nc|ENSG00000182983|Q6ZS27-3|ZNF662	ENST00000490457.5_1_3:40567331-40615968:+|nuORF	ENST00000490457.5_1_3:40567331-40615968:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.3102416992188	2	515.310221	1028.60589	0.16489	8.4968E-05	-0.15762	-8.1224E-05	0.0072646	3.7435E-06	515.3099682857223	69.967	1.067	69.945	69.181	70.248	-0.022087					108	38	4	0	0	0	0.062246	4	17614	17614;17660;17753;17787		48.346	33.764	1	1530900			9375	6669	5215	5215	12253;12254;12255;12256	12253					0.0927301321332834
FPFPKPDLI	9	Unmodified	_FPFPKPDLI_					0	0	0		nc|ENSG00000177873|Q8N2I2-2|ZNF619;ENST00000494154.6_1_3:40523704-40529729:+|nuORF;ENSG00000177873|ENST00000432264|ZNF619;nc|ENSG00000177873|Q8N2I2-4|ZNF619;ZNF619|p.R58Efs*15|1|0.5|ENSG00000177873|chr3:40482674-40482674|G/-|frameshift_variant;ENST00000314686.9_1_3:40519470-40525181:+|nuORF	nc|ENSG00000177873|Q8N2I2-2|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.3388671875	2	537.305136	1072.59572	0.58654	0.00031515	-1.6651	-0.00089465	-1.0785	-0.0005795	537.303783048697	71.129	0.44122	71.104	70.718	71.159	-0.024872					18	15	2	0	0	0	0.1939	1	18036	18036		30.637	11.275	1	235590			9376	7021	5216	5216	12257	12257					0.06232405488094628
FPFPTPPSV	9	Unmodified	_FPFPTPPSV_					0	0	0		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7712097167969	2	494.760561	987.506569	0.50882	0.00025174	0.19279	9.5386E-05	0.70161	0.00034713	494.76063231432846	76.866	1.2694	76.866	76.422	77.691	0					124	46	4	0	0	0	0.0046213	5	19898	19768;19816;19847;19898;19948		89.427	77.984	1	1439500			9377	4930	5217	5217	12258;12259;12260;12261;12262	12261					0.012315705285800504
FPFPTPPSV	9	Unmodified	_FPFPTPPSV_					0	0	0		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7607116699219	2	494.760561	987.506569	0.3794	0.00018771	0.33213	0.00016432	0.71153	0.00035204	494.76071345215865	76.819	1.3053	76.872	76.371	77.677	0.053413					126	46	4	0	0	0	0.0036555	6	19757	19757;19804;19823;19873;19921;19967		97.075	97.075	1	1485800			9378	4930	5217	5217	12263;12264;12265;12266;12267;12268	12263					0.012315705285800504
FPFPTPPSV	9	Unmodified	_FPFPTPPSV_					0	0	0		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7608947753906	2	494.760561	987.506569	0.6239	0.00030868	0.13701	6.7785E-05	0.76091	0.00037647	494.76059328155696	76.933	1.2516	76.902	76.452	77.704	-0.031334					132	45	4	0	0	0	0.0061338	6	19811	19770;19811;19845;19895;19942;19988		85.357	85.357	1	1390200			9379	4930	5217	5217	12269;12270;12271;12272;12273;12274	12270					0.012315705285800504
FPFPVSPSCC	10	Unmodified	_FPFPVSPSCC_					0	0	0		nc|ENSG00000101365|O43837-3|IDH3B;ENST00000462967.5_1_20:2641101-2641311:-|nuORF	nc|ENSG00000101365|O43837-3|IDH3B	nc|ENSG00000101365|O43837-3|IDH3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2360229492188	2	542.235538	1082.45652	0.61077	0.00033118	-0.15144	-8.2115E-05	0.45933	0.00024907	542.2355619727691	66.434	2.3077	66.434	65.634	67.942	0					214	81	4	0	0	0	0.24715	2	16615	16615;16667		26.884	0	1	2645900			9380	12622	5218	5218	12275;12276	12275					-0.08140623463236807
FPFPVSPSCC	10	Unmodified	_FPFPVSPSCC_					0	0	0		nc|ENSG00000101365|O43837-3|IDH3B;ENST00000462967.5_1_20:2641101-2641311:-|nuORF	nc|ENSG00000101365|O43837-3|IDH3B	nc|ENSG00000101365|O43837-3|IDH3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2359008789062	2	542.235538	1082.45652	0.63674	0.00034526	-0.39597	-0.00021471	0.24077	0.00013055	542.2355116607084	66.269	2.0382	66.353	65.571	67.609	0.083832					221	73	5	0	0	0	0.18807	2	16578	16578;16669		34.102	0	1	2834200			9381	12622	5218	5218	12277;12278	12277					-0.08140623463236807
FPFPVSPSCC	10	Unmodified	_FPFPVSPSCC_					0	0	0		nc|ENSG00000101365|O43837-3|IDH3B;ENST00000462967.5_1_20:2641101-2641311:-|nuORF	nc|ENSG00000101365|O43837-3|IDH3B	nc|ENSG00000101365|O43837-3|IDH3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2361450195312	2	542.235538	1082.45652	0.54093	0.00029331	-0.04135	-2.2422E-05	0.49958	0.00027089	542.2355809051753	66.388	1.8141	66.374	65.639	67.453	-0.013596					189	64	4	0	0	0	0.18807	3	16579	16579;16626;16678		34.102	7.2188	1	2855900			9382	12622	5218	5218	12279;12280;12281	12279					-0.08140623463236807
FPFRASAFLPS	11	Unmodified	_FPFRASAFLPS_					0	0	0		ENST00000360325.11_1_17:7163361-7163544:-|nuORF	ENST00000360325.11_1_17:7163361-7163544:-|nuORF	ENST00000360325.11_1_17:7163361-7163544:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2267150878906	3	413.888874	1238.64479	-0.33155	-0.00013722	-2.1733	-0.00089951	-2.5049	-0.0010367	414.2221210125299	14.789	0.16928	14.789	14.649	14.819	0					7	5	2	0	0	0	0.33324	1	830	830		0.40827	0.13925	1	17086			9383	9676	5219	5219	12282	12282					0.03501693777025139
FPFTVGRI	8	Unmodified	_FPFTVGRI_					0	0	0		nc|ENSG00000153086|Q8TDX5-2|ACMSD;ENSG00000153086|ENST00000356140|ACMSD	nc|ENSG00000153086|Q8TDX5-2|ACMSD	nc|ENSG00000153086|Q8TDX5-2|ACMSD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.3076477050781	2	468.76872	935.522887	-0.068171	-3.1956E-05	0.44132	0.00020688	0.37315	0.00017492	468.7688024560816	61.806	0.59388	61.806	61.569	62.162	0					56	21	4	0	0	0	0.069372	1	15201	15201		74.929	20.155	1	983210			9384	5059	5220	5220	12283	12283					0.052546964853377176
FPFTVGRI	8	Unmodified	_FPFTVGRI_					0	0	0		nc|ENSG00000153086|Q8TDX5-2|ACMSD;ENSG00000153086|ENST00000356140|ACMSD	nc|ENSG00000153086|Q8TDX5-2|ACMSD	nc|ENSG00000153086|Q8TDX5-2|ACMSD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.3075256347656	2	468.76872	935.522887	-0.33195	-0.00015561	0.78677	0.00036881	0.45482	0.00021321	468.7689168848714	61.728	0.63629	61.825	61.592	62.228	0.096985					52	22	4	0	0	0	0.052835	1	15199	15199		85.272	21.036	1	926820			9385	5059	5220	5220	12284	12284					0.052546964853377176
FPFTVGRI	8	Unmodified	_FPFTVGRI_					0	0	0		nc|ENSG00000153086|Q8TDX5-2|ACMSD;ENSG00000153086|ENST00000356140|ACMSD	nc|ENSG00000153086|Q8TDX5-2|ACMSD	nc|ENSG00000153086|Q8TDX5-2|ACMSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7687683105469	2	468.76872	935.522887	-0.1083	-5.0767E-05	0.48058	0.00022528	0.37228	0.00017451	468.7687984340991	61.814	0.7736	61.805	61.528	62.302	-0.0085564					56	27	3	0	0	0	0.11046	1	15265	15265		58.679	3.9053	1	951350			9386	5059	5220	5220	12285	12285					0.052546964853377176
FPFVVFYV	8	Unmodified	_FPFVVFYV_					0	0	0			REV__CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant;REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2732238769531	2	509.275847	1016.53714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.57	1	117.55	117.05	118.05	-0.024147								0	0	0	0.37992	1	30424	30424		0.79363	0	1		+		9387	13135;18809	5221	5221	12286	12286					0.029533489136156277
FPFYGKPMRI	10	Oxidation (M)	_FPFYGKPM(Oxidation (M))RI_		FPFYGKPM(1)RI		FPFYGKPM(79)RI	0	0	1		ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.333984375	2	636.333901	1270.65325	0.10753	6.8427E-05	-0.0037312	-2.3743E-06	0.1038	6.6052E-05	636.3340472570575	46.402	0.59195	46.402	46.168	46.76	0					58	21	4	0	0	0	0.013578	2	10463	10463;10511		78.728	48.092	1	1254800			9388	3242	5222	5222	12287;12288	12287		414			0.028749244220080072
FPFYGKPMRI	10	Oxidation (M)	_FPFYGKPM(Oxidation (M))RI_		FPFYGKPM(1)RI		FPFYGKPM(41)RI	0	0	1		ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.5580749511719	3	424.55836	1270.65325	-0.24067	-0.00010218	-0.29529	-0.00012537	-0.53596	-0.00022755	424.5582076809069	46.406	1.136	46.406	46.138	47.274	0					113	40	5	0	0	0	0.13386	1	10477	10477		40.725	26.507	1	5240800			9389	3242	5222	5222	12289	12289		414			0.028749244220080072
FPFYGKPMRI	10	Oxidation (M)	_FPFYGKPM(Oxidation (M))RI_		FPFYGKPM(1)RI		FPFYGKPM(100)RI	0	0	1		ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.3342895507812	2	636.333901	1270.65325	0.44036	0.00028022	-0.48053	-0.00030578	-0.040169	-2.5561E-05	636.3337079364696	46.247	0.56659	46.307	46.043	46.61	0.059834					48	20	3	0	0	0	0.0036033	1	10396	10396		99.799	70.717	1	1441500			9390	3242	5222	5222	12290	12290		414			0.028749244220080072
FPFYGKPMRI	10	Oxidation (M)	_FPFYGKPM(Oxidation (M))RI_		FPFYGKPM(1)RI		FPFYGKPM(50)RI	0	0	1		ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.55792236328125	3	424.55836	1270.65325	-0.18182	-7.7194E-05	-0.41829	-0.00017759	-0.60011	-0.00025478	424.5581614323758	46.222	1.216	46.282	45.984	47.2	0.059834					119	44	4	0	0	0	0.093324	3	10446	10400;10446;10493		49.527	37.353	1	6864000			9391	3242	5222	5222	12291;12292;12293	12292		414			0.028749244220080072
FPFYGKPMRI	10	Oxidation (M)	_FPFYGKPM(Oxidation (M))RI_		FPFYGKPM(1)RI		FPFYGKPM(79)RI	0	0	1		ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.3338012695312	2	636.333901	1270.65325	0.47207	0.00030039	-0.27359	-0.00017409	0.19848	0.0001263	636.8352423986784	46.28	0.678	46.345	46.07	46.748	0.065048					57	24	3	0	0	0	0.013578	2	10387	10387;10455		78.728	48.092	1	1322700			9392	3242	5222	5222	12294;12295	12294		414			0.028749244220080072
FPFYGKPMRI	10	Oxidation (M)	_FPFYGKPM(Oxidation (M))RI_		FPFYGKPM(1)RI		FPFYGKPM(42)RI	0	0	1		ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	ENSG00000125870|ENST00000246071|SNRPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.5580139160156	3	424.55836	1270.65325	-0.1433	-6.084E-05	-0.43885	-0.00018632	-0.58215	-0.00024716	424.55812672805143	46.252	1.0408	46.317	45.976	47.017	0.065048					114	36	4	0	0	0	0.12628	1	10442	10442		42.312	32.548	1	6122600			9393	3242	5222	5222	12296	12296		414			0.028749244220080072
FPGLAIKI	8	Unmodified	_FPGLAIKI_					0	0	0		ENSG00000142945|ENST00000372224|KIF2C;ENST00000455186.5_1_1:45205634-45205691:+|nuORF;ENST00000493027.5_1_1:45205556-45221765:+|nuORF	ENSG00000142945|ENST00000372224|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.77593994140625	2	429.776014	857.537475	0.047095	2.0241E-05	-0.18408	-7.9113E-05	-0.13698	-5.8873E-05	429.77588940392434	66.488	0.75668	66.488	66.152	66.909	0					60	26	3	0	0	0	0.026049	2	16671	16619;16671		93.883	46.963	1	834210			9394	4471	5223	5223	12297;12298	12298					0.10300768633453572
FPGLAIKI	8	Unmodified	_FPGLAIKI_					0	0	0		ENSG00000142945|ENST00000372224|KIF2C;ENST00000455186.5_1_1:45205634-45205691:+|nuORF;ENST00000493027.5_1_1:45205556-45221765:+|nuORF	ENSG00000142945|ENST00000372224|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.77581787109375	2	429.776014	857.537475	0.021448	9.2177E-06	-0.1094	-4.7017E-05	-0.087951	-3.7799E-05	429.7758601745648	66.368	0.8797	66.452	66.083	66.963	0.083832					70	31	3	0	0	0	0.082568	3	16573	16573;16620;16689		63.563	31.446	1	799100			9395	4471	5223	5223	12299;12300;12301	12299					0.10300768633453572
FPGLAIKI	8	Unmodified	_FPGLAIKI_					0	0	0		ENSG00000142945|ENST00000372224|KIF2C;ENST00000455186.5_1_1:45205634-45205691:+|nuORF;ENST00000493027.5_1_1:45205556-45221765:+|nuORF	ENSG00000142945|ENST00000372224|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.7758483886719	2	429.776014	857.537475	-0.10393	-4.4666E-05	0.0013058	5.6119E-07	-0.10262	-4.4105E-05	429.7759414897594	66.519	0.81693	66.506	66.167	66.984	-0.013596					69	29	3	0	0	0	0.082568	4	16614	16614;16660;16715;16762		63.563	31.446	1	823740			9396	4471	5223	5223	12302;12303;12304;12305	12302					0.10300768633453572
FPGLAIKIQ	9	Unmodified	_FPGLAIKIQ_					0	0	0		ENSG00000142945|ENST00000372224|KIF2C;ENST00000455186.5_1_1:45205634-45205691:+|nuORF;ENST00000493027.5_1_1:45205556-45221765:+|nuORF	ENSG00000142945|ENST00000372224|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.79266357421875	2	493.805303	985.596052	0.56052	0.00027679	-0.34302	-0.00016939	0.2175	0.0001074	493.8050490274884	57.004	0.38606	56.985	56.809	57.196	-0.019077					25	13	3	0	0	0	0.30623	1	13778	13778		7.9102	1.187	1	264090			9397	4471	5224	5224	12306	12306					0.10267825207927217
FPGLAIKIQ	9	Unmodified	_FPGLAIKIQ_					0	0	0		ENSG00000142945|ENST00000372224|KIF2C;ENST00000455186.5_1_1:45205634-45205691:+|nuORF;ENST00000493027.5_1_1:45205556-45221765:+|nuORF	ENSG00000142945|ENST00000372224|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.805303	985.596052	0.49839	0.00024611	-0.41501	-0.00020494	0.083381	4.1174E-05	493.80517594158897	56.957	0.34385	56.957	56.772	57.116	0	-9.6746E-06	-9.454E-05	NaN	7.9102	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228660			9398	4471	5224	5224							0.10267825207927217
FPGLAIKIQ	9	Unmodified	_FPGLAIKIQ_					0	0	0		ENSG00000142945|ENST00000372224|KIF2C;ENST00000455186.5_1_1:45205634-45205691:+|nuORF;ENST00000493027.5_1_1:45205556-45221765:+|nuORF	ENSG00000142945|ENST00000372224|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	493.805303	985.596052	0.45682	0.00022558	-0.18369	-9.0706E-05	0.27313	0.00013487	493.8052681106217	56.851	0.39494	56.93	56.73	57.125	0.078674	-0.027872	0.00013392	NaN	7.9102	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299370			9399	4471	5224	5224							0.10267825207927217
FPGPQSISIK	10	Unmodified	_FPGPQSISIK_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.3212280273438	2	537.303124	1072.5917	0.47365	0.00025449	0.098056	5.2686E-05	0.5717	0.00030718	537.3031408271366	57.733	0.60939	57.733	57.578	58.187	0					27	21	2	0	0	0	0.33104	1	13991	13991		16.149	1.3108	1	447920			9400	1863	5225	5225	12307	12307					0.058303159943761784
FPGPQSISIK	10	Unmodified	_FPGPQSISIK_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7950439453125	2	537.303124	1072.5917	0.50739	0.00027262	-0.10869	-5.8399E-05	0.3987	0.00021422	537.3030674366033	57.879	0.5282	57.862	57.69	58.218	-0.0172					32	19	2	0	0	0	0.29112	1	13995	13995		14.405	0	1	391690			9401	1863	5225	5225	12308	12308					0.058303159943761784
FPGPRLSFG	9	Unmodified	_FPGPRLSFG_					0	0	0		ENST00000465030.1_1_X:70280941-70288225:-|nuORF	ENST00000465030.1_1_X:70280941-70288225:-|nuORF	ENST00000465030.1_1_X:70280941-70288225:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2640075683594	2	489.263802	976.513051	0.49695	0.00024314	-0.27967	-0.00013683	0.21728	0.00010631	489.2638233132455	52.702	1.7176	52.752	52.172	53.89	0.050575					210	63	7	0	0	0	0.18943	1	12444	12444		30.225	0	1	23115000			9402	10789	5226	5226	12309	12309					0.023855084799379256
FPGQVRRTLF	10	Unmodified	_FPGQVRRTLF_					0	0	0		ENST00000474478.5_1_1:226053595-226053706:-|nuORF	ENST00000474478.5_1_1:226053595-226053706:-|nuORF	ENST00000474478.5_1_1:226053595-226053706:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.56927490234375	3	407.568135	1219.68258	-0.22748	-9.2714E-05	-0.05605	-2.2844E-05	-0.28353	-0.00011556	408.2355133939733	15.469	1.4859	15.405	15.186	16.672	-0.064413					143	50	5	0	0	0	0.39009	1	1244	1244		2.8433	0	1	636260			9403	10924	5227	5227	12310	12310					0.08152204762518522
FPHFFKRL	8	Unmodified	_FPHFFKRL_					0	0	0			REV__ENSG00000249853|ENST00000312719|HS3ST5	REV__ENSG00000249853|ENST00000312719|HS3ST5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.292724609375	2	546.311087	1090.60762	0.46867	0.00025604	2.6182	0.0014304	3.0869	0.0016864	546.3122620569002	63.184	0.32896	63.184	63.011	63.34	0					18	11	2	0	0	0	0.34218	1	15649	15649		9.3474	0.75416	1	147930	+		9404	19212	5228	5228	12311	12311					0.06594067021956107
FPHLQLLDV	9	Unmodified	_FPHLQLLDV_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3060913085938	2	541.305667	1080.59678	0.24739	0.00013391	-0.29938	-0.00016205	-0.051985	-2.814E-05	541.3055770403842	73.554	0.55774	73.554	73.335	73.893	0					46	19	3	0	0	0	0.074552	2	18839	18789;18839		43.772	18.373	1	683190			9405	5677	5229	5229	12312;12313	12313					0.059706198569983826
FPHLQLLDV	9	Unmodified	_FPHLQLLDV_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.3055419921875	2	541.305667	1080.59678	0.38767	0.00020985	-1.1853	-0.00064163	-0.79767	-0.00043178	541.3052713730164	73.586	0.76146	73.639	73.064	73.826	0.05275					56	27	3	0	0	0	0.13748	1	18774	18774		32.786	7.3864	1	665480			9406	5677	5229	5229	12314	12314					0.059706198569983826
FPHLQLLDV	9	Unmodified	_FPHLQLLDV_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.3062744140625	2	541.305667	1080.59678	0.50646	0.00027415	-1.5074	-0.00081595	-1.0009	-0.0005418	541.3045794351384	73.672	1.0107	73.641	72.844	73.855	-0.030655					58	36	3	0	0	0	0.074552	1	18801	18801		43.772	24.333	1	614960			9407	5677	5229	5229	12315	12315					0.059706198569983826
FPHLVHAEL	9	Unmodified	_FPHLVHAEL_					0	0	0		ENSG00000140983|ENST00000315082|RHOT2;ENST00000568636.5_1_16:722693-723603:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2	ENSG00000140983|ENST00000315082|RHOT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8191528320312	2	531.790184	1061.56581	0.80043	0.00042566	0.090217	4.7977E-05	0.89065	0.00047364	531.790226975755	47.173	0.53248	47.173	46.961	47.493	0					30	18	2	0	0	0	0.1659	1	10745	10745		36.044	19.102	1	618580			9408	4347	5230	5230	12316	12316					0.03749466542740265
FPHRPQPL	8	Unmodified	_FPHRPQPL_					0	0	0		ENSG00000137103|ENST00000643932|TMEM8B	ENSG00000137103|ENST00000643932|TMEM8B	ENSG00000137103|ENST00000643932|TMEM8B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7498779296875	2	496.277244	990.539935	0.31283	0.00015525	-3.108	-0.0015424	-2.7952	-0.0013872	496.27547732389417	69.846	0.84292	69.824	69.489	70.332	-0.022087					47	30	2	0	0	0	0.32778	1	17579	17579		14.582	0	1	235050			9409	4027	5231	5231	12317	12317					0.04428617091127762
FPHTRLGKLLT	11	Unmodified	_FPHTRLGKLLT_					0	0	0		ENSG00000170745|ENST00000304101|KCNS3	ENSG00000170745|ENST00000304101|KCNS3	ENSG00000170745|ENST00000304101|KCNS3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8826293945312	2	641.885147	1281.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.836	1	99.836	99.336	100.34	0								0	0	0	0.38126	1	26696	26696		1.1933	0.23107	1				9410	6474	5232	5232	12318	12318					0.12613333485114708
FPHVLPLI	8	Unmodified	_FPHVLPLI_					0	0	0		nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C;nc|ENSG00000095370|Q8N5H7-3|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.2890319824219	2	468.289288	934.564024	-0.13312	-6.2339E-05	-0.12036	-5.6362E-05	-0.25348	-0.0001187	468.2891261736077	73.481	0.97763	73.481	73.02	73.998	0					95	34	4	0	0	0	0.1467	1	18757	18757		52.334	19.881	1	1722000			9411	1449	5233	5233	12319	12319					0.09412457524797446
FPHVLPLI	8	Unmodified	_FPHVLPLI_					0	0	0		nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C;nc|ENSG00000095370|Q8N5H7-3|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2890930175781	2	468.289288	934.564024	-0.031774	-1.4879E-05	-0.24888	-0.00011655	-0.28065	-0.00013143	468.2890733603598	73.453	1.023	73.507	73.01	74.033	0.053833					93	36	4	0	0	0	0.079765	2	18754	18754;18855		64.081	31.627	1	1861800			9412	1449	5233	5233	12320;12321	12320					0.09412457524797446
FPHVLPLI	8	Unmodified	_FPHVLPLI_					0	0	0		nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C;nc|ENSG00000095370|Q8N5H7-3|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.2890625	2	468.289288	934.564024	0.19093	8.9409E-05	-0.40639	-0.00019031	-0.21546	-0.0001009	468.28897173046806	73.531	0.99217	73.502	73.009	74.001	-0.029305					100	35	4	0	0	0	0.1467	1	18761	18761		52.334	19.881	1	1686100			9413	1449	5233	5233	12322	12322					0.09412457524797446
FPIATLVNV	9	Unmodified	_FPIATLVNV_					0	0	0			REV__ENST00000463718.5_1_12:21428225-21457481:-|nuORF	REV__ENST00000463718.5_1_12:21428225-21457481:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.8000793457031	2	487.289485	972.564418	0.51563	0.00025126	1.2405	0.0006045	1.7562	0.00085576	487.2902637753719	84.324	0.6051	84.324	84.057	84.663	0					35	22	2	0	0	0	0.25989	1	22168	22168		14.838	3.198	1	91595	+		9414	13947	5234	5234	12323	12323					0.07703832454012627
FPIDHFTHI	9	Unmodified	_FPIDHFTHI_					0	0	0		nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;ENSG00000155363|ENST00000369645|MOV10	nc|ENSG00000155363|Q9HCE1-2|MOV10	nc|ENSG00000155363|Q9HCE1-2|MOV10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.7883911132812	2	563.787641	1125.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.998	1	53.055	52.555	53.555	0.056255								0	0	0	0.0043709	1	12481	12481		88.904	52.777	1				9415	5171	5235	5235	12324	12324					0.002971626801581806
FPIHAITGV	9	Unmodified	_FPIHAITGV_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.33123779296875	2	477.774003	953.533452	0.37984	0.00018148	-0.1392	-6.6508E-05	0.24064	0.00011497	477.773874978611	55.257	0.32974	55.238	55.104	55.434	-0.019077					17	11	2	0	0	0	0.19839	1	13210	13210		28.487	6.7402	1	159780			9416	1483	5236	5236	12325	12325					0.054826791397545094
FPIIGDSKFF	10	Unmodified	_FPIIGDSKFF_					0	0	0			REV__ENSG00000108960|ENST00000262065|MMD	REV__ENSG00000108960|ENST00000262065|MMD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.7847290039062	2	585.813325	1169.6121	0.52475	0.00030741	-0.18713	-0.00010963	0.33762	0.00019778	585.8130527894016	63.894	0.2562	63.894	63.797	64.053	0					10	8	2	0	0	0	0.31395	1	15891	15891		12.532	3.1484	1	127910	+		9417	14620	5237	5237	12326	12326					0.03407486654191416
FPILIRQV	8	Unmodified	_FPILIRQV_					0	0	0		COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.82635498046875	2	493.313295	984.612037	0.47696	0.00023529	0.014329	7.0688E-06	0.49129	0.00024236	493.31327357660143	60.938	0.60299	61.035	60.67	61.273	0.096985					34	21	2	0	0	0	0.28235	1	14988	14988		38.151	13.477	1	1142700			9418	193	5238	5238	12327	12327					0.11911531444843604
FPILIRQV	8	Unmodified	_FPILIRQV_					0	0	0		COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.82647705078125	2	493.313295	984.612037	0.45785	0.00022586	-0.37246	-0.00018374	0.085394	4.2126E-05	493.31310820085173	60.993	0.53537	60.984	60.708	61.243	-0.0094566					34	19	2	0	0	0	0.31934	1	15010	15010		24.674	5.2349	1	1191300			9419	193	5238	5238	12328	12328					0.11911531444843604
FPINPGLFI	9	Unmodified	_FPINPGLFI_					0	0	0		ENSG00000171604|ENST00000302517|CXXC5;ENST00000515038.1_1_5:139060567-139061044:+|nuORF;nc|ENSG00000171604|Q7LFL8-2|CXXC5	ENSG00000171604|ENST00000302517|CXXC5	ENSG00000171604|ENST00000302517|CXXC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8855895996094	2	509.292028	1016.5695	0.23554	0.00011996	-1.1452	-0.00058326	-0.9097	-0.0004633	509.2917323011388	92.891	0.76801	92.891	92.57	93.338	0					132	62	3	0	0	0	0.22596	1	24733	24733		21.747	10.106	1	236100			9420	6561	5239	5239	12329	12329					0.061881363165980474
FPINPGLFI	9	Unmodified	_FPINPGLFI_					0	0	0		ENSG00000171604|ENST00000302517|CXXC5;ENST00000515038.1_1_5:139060567-139061044:+|nuORF;nc|ENSG00000171604|Q7LFL8-2|CXXC5	ENSG00000171604|ENST00000302517|CXXC5	ENSG00000171604|ENST00000302517|CXXC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8855285644531	2	509.292028	1016.5695	0.24856	0.00012659	-1.1863	-0.00060419	-0.93778	-0.00047761	509.2919113258101	92.749	0.66769	92.839	92.508	93.176	0.089203					134	54	3	0	0	0	0.24311	1	24643	24643		16.942	5.302	1	297400			9421	6561	5239	5239	12330	12330					0.061881363165980474
FPINPGLFI	9	Unmodified	_FPINPGLFI_					0	0	0		ENSG00000171604|ENST00000302517|CXXC5;ENST00000515038.1_1_5:139060567-139061044:+|nuORF;nc|ENSG00000171604|Q7LFL8-2|CXXC5	ENSG00000171604|ENST00000302517|CXXC5	ENSG00000171604|ENST00000302517|CXXC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8855285644531	2	509.292028	1016.5695	0.41052	0.00020907	-1.3669	-0.00069614	-0.95637	-0.00048707	509.29171953862897	92.951	0.86759	92.951	92.441	93.308	0.00046539					165	73	3	0	0	0	0.22596	1	24738	24738		21.747	4.8044	1	334360			9422	6561	5239	5239	12331	12331					0.061881363165980474
FPINRVLI	8	Unmodified	_FPINRVLI_					0	0	0			REV__ENSG00000122965|ENST00000261741|RBM19	REV__ENSG00000122965|ENST00000261741|RBM19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.30816650390625	2	486.30547	970.596387	0.46971	0.00022842	-1.287	-0.00062587	-0.81727	-0.00039744	486.3046182444795	66.006	1.4228	66.09	65.623	67.046	0.083832					117	51	4	0	0	0	0.33916	1	16549	16549		26.341	5.8877	1	4369300	+		9423	15176	5240	5240	12332	12332					0.10991244927799926
FPIPTYYIP	9	Unmodified	_FPIPTYYIP_					0	0	0			REV__nc|ENSG00000163564|Q6K0P9-6|PYHIN1	REV__nc|ENSG00000163564|Q6K0P9-6|PYHIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2786865234375	2	555.797143	1109.57973	0.41521	0.00023077	-1.8042	-0.0010028	-1.389	-0.00077201	556.2970679824676	86.356	0.54112	86.347	86.154	86.695	-0.0090027					29	20	2	0	0	0	0.25811	1	22758	22758		5.2307	0	1	84077	+		9424	23057	5241	5241	12333	12333					0.02932699251186932
FPIRSFLE	8	Unmodified	_FPIRSFLE_					0	0	0			REV__ENSG00000064703|ENST00000369702|DDX20	REV__ENSG00000064703|ENST00000369702|DDX20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7790832519531	2	504.779285	1007.54402	0.23527	0.00011876	-1.1166	-0.00056363	-0.88132	-0.00044487	504.7793970938542	69.242	2.1371	69.242	68.736	70.873	0					133	77	2	0	0	0	0.20518	1	17415	17415		42.095	2.1449	1	1001000	+		9425	13648	5242	5242	12334	12334					0.04054661794179992
FPITALREI	9	Unmodified	_FPITALREI_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.313232421875	2	530.313492	1058.61243	0.6694	0.00035499	-0.23385	-0.00012402	0.43555	0.00023098	530.3131677980164	60.981	0.5995	60.981	60.607	61.207	0					30	21	2	0	0	0	0.016723	1	14954	14954		69.105	0	1	791770			9426	3998	5243	5243	12335	12335					0.08546906374044738
FPITALREI	9	Unmodified	_FPITALREI_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.31396484375	2	530.313492	1058.61243	0.5079	0.00026934	0.13741	7.2871E-05	0.64531	0.00034221	530.3133835997937	63.066	0.6378	63.066	62.776	63.413	0					60	23	3	0	0	0	0.0037449	2	15572	15572;15621		96.367	0	1	820120			9427	3998	5243	5243	12336;12337	12336					0.08546906374044738
FPITALREI	9	Unmodified	_FPITALREI_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.8154296875	2	530.313492	1058.61243	0.45347	0.00024048	0.93438	0.00049552	1.3879	0.000736	530.3133146477606	62.974	0.76524	63.07	62.712	63.477	0.095722					66	27	4	0	0	0	0.0054984	2	15528	15528;15580		86.332	0	1	865540			9428	3998	5243	5243	12338;12339	12338					0.08546906374044738
FPITALREI	9	Unmodified	_FPITALREI_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.314208984375	2	530.313492	1058.61243	0.54243	0.00028766	0.42384	0.00022477	0.96626	0.00051242	530.3134655441787	60.884	0.5752	60.981	60.698	61.273	0.096989					25	20	2	0	0	0	0.11234	1	14910	14910		51.63	0	1	1341400			9429	3998	5243	5243	12340	12340					0.08546906374044738
FPITALREI	9	Unmodified	_FPITALREI_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.313720703125	2	530.313492	1058.61243	0.45321	0.00024034	-0.033822	-1.7936E-05	0.41939	0.00022241	530.3134420538606	63.055	0.7888	63.047	62.646	63.435	-0.0085564					68	28	4	0	0	0	0.032589	1	15623	15623		59.368	0	1	816500			9430	3998	5243	5243	12341	12341					0.08546906374044738
FPITALREI	9	Unmodified	_FPITALREI_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.313720703125	2	530.313492	1058.61243	0.657	0.00034842	0.018719	9.927E-06	0.67572	0.00035834	530.3132648370588	61.028	0.64051	61.019	60.656	61.296	-0.0094566					32	23	2	0	0	0	0.08298	1	14928	14928		60.074	0	1	787450			9431	3998	5243	5243	12342	12342					0.08546906374044738
FPKALGQLI	9	Unmodified	_FPKALGQLI_					0	0	0		nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-6|PIGT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.805419921875	2	493.805303	985.596052	0.49248	0.00024319	0.514	0.00025382	1.0065	0.00049701	493.80558473004294	63.377	0.91436	63.472	63.016	63.93	0.095722					39	32	2	0	0	0	0.079066	1	15670	15670		42.095	6.0504	1	330540			9432	3133	5244	5244	12343	12343					0.10267825207949954
FPKALGQLI	9	Unmodified	_FPKALGQLI_					0	0	0		nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT	nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-6|PIGT	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.805303	985.596052	0.46449	0.00022937	0.046744	2.3082E-05	0.51123	0.00025245	493.8055859694772	63.498	0.82216	63.498	63.093	63.915	0	0.030433	-0.00035215	NaN	42.095	45	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257180			9433	3133	5244	5244							0.10267825207949954
FPKGFSVEL	9	Unmodified	_FPKGFSVEL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2787475585938	2	512.279118	1022.54368	0.37672	0.00019299	-0.7404	-0.00037929	-0.36367	-0.0001863	512.278676933236	62.616	0.95615	62.616	62.187	63.143	0					85	35	3	0	0	0	0.014206	2	15472	15426;15472		72.968	38.566	1	973690			9434	2713	5245	5245	12344;12345	12345					0.03331242074330021
FPKGFSVEL	9	Unmodified	_FPKGFSVEL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2786865234375	2	512.279118	1022.54368	0.33524	0.00017173	-0.78229	-0.00040075	-0.44705	-0.00022902	512.2786795377955	62.515	0.92137	62.612	62.254	63.175	0.096989					83	33	3	0	0	0	0.026579	2	15442	15393;15442		61.602	26.421	1	949620			9435	2713	5245	5245	12346;12347	12347					0.03331242074330021
FPKGFSVEL	9	Unmodified	_FPKGFSVEL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2788696289062	2	512.279118	1022.54368	0.23588	0.00012084	-0.69298	-0.000355	-0.4571	-0.00023416	512.2787807827683	62.656	1.018	62.648	62.118	63.136	-0.0085564					90	37	3	0	0	0	0.014206	2	15460	15412;15460		72.968	36.841	1	897470			9436	2713	5245	5245	12348;12349	12349					0.03331242074330021
FPKNIFAEL	9	Unmodified	_FPKNIFAEL_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8002319335938	2	539.800217	1077.58588	0.36005	0.00019436	-1.9171	-0.0010349	-1.5571	-0.00084051	539.7990901224423	69.689	1.677	69.689	69.006	70.683	0					106	60	3	0	0	0	0.03069	1	17631	17631		60.074	23.568	1	543160			9437	6700	5246	5246	12350	12350					0.05019217482708882
FPKNIFAEL	9	Unmodified	_FPKNIFAEL_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8001708984375	2	539.800217	1077.58588	0.34431	0.00018586	-1.3822	-0.00074611	-1.0379	-0.00056025	539.7993385782913	69.609	1.5718	69.675	69.178	70.749	0.066048					90	55	3	0	0	0	0.058995	1	17602	17602		49.554	49.554	1	555490			9438	6700	5246	5246	12351	12351					0.05019217482708882
FPKNIFAEL	9	Unmodified	_FPKNIFAEL_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8001708984375	2	539.800217	1077.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.726	1	69.704	69.204	70.204	-0.022087								0	0	0	0.052743	1	17622	17622		60.074	30.233	1				9439	6700	5246	5246	12352	12352					0.05019217482708882
FPKRAFKL	8	Unmodified	_FPKRAFKL_					0	0	0			REV__nc|ENSG00000075043|O43526-6|KCNQ2	REV__nc|ENSG00000075043|O43526-6|KCNQ2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.20703125	2	503.813462	1005.61237	0.63136	0.00031809	2.4584	0.0012386	3.0898	0.0015567	503.813255488188	78.121	0.1384	78.179	78.115	78.253	0.058151					5	4	2	0	0	0	0.34046	1	20202	20202		14.582	4.3983	1	60226	+		9440	13798	5247	5247	12353	12353					0.10978951164690898
FPLAVPRLF	9	Unmodified	_FPLAVPRLF_					0	0	0			REV__ENST00000493312.6_1_X:1387742-1407416:+|nuORF	REV__ENST00000493312.6_1_X:1387742-1407416:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3136596679688	2	530.32112	1058.62769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.004	1	62.995	62.495	63.495	-0.0085526								0	0	0	0.16935	1	15568	15568		30.225	0	1		+		9441	21637	5248	5248	12354	12354					0.1007181796187524
FPLERKAF	8	Unmodified	_FPLERKAF_					0	0	0		ENST00000570269.2_3_3:114045162-114045429:-|nuORF	ENST00000570269.2_3_3:114045162-114045429:-|nuORF	ENST00000570269.2_3_3:114045162-114045429:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7843017578125	2	504.287277	1006.56	0.12778	6.4436E-05	-4.3677	-0.0022026	-4.2399	-0.0021381	504.2863778190608	81.838	0.37478	81.907	81.73	82.105	0.068993					23	16	3	0	0	0	0.3225	1	21304	21304		15.768	5.5848	1	127960			9442	12021	5249	5249	12355	12355					0.056983680310850104
FPLESQLIL	9	Unmodified	_FPLESQLIL_					0	0	0		ENSG00000223611|ENST00000486479|SUPT20HL2	ENSG00000223611|ENST00000486479|SUPT20HL2	ENSG00000223611|ENST00000486479|SUPT20HL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7620849609375	2	530.307875	1058.6012	0.61049	0.00032375	-1.5085	-0.00079995	-0.89798	-0.0004762	530.3058537574628	89.186	0.29669	89.186	88.984	89.281	0					13	12	2	0	0	0	0.1524	1	23618	23618		39.957	9.3208	1	56943			9443	8439	5250	5250	12356	12356					0.07424084279909948
FPLETQIYTKA	11	Unmodified	_FPLETQIYTKA_					0	0	0			REV__nc|ENSG00000011451|O95785-2|WIZ	REV__nc|ENSG00000011451|O95785-2|WIZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.22332763671875	3	437.571211	1309.6918	-0.13534	-5.922E-05	-0.23038	-0.00010081	-0.36572	-0.00016003	437.5711526136135	18.42	0.51866	18.42	18.127	18.646	0					21	17	2	0	0	0	0.33334	1	1882	1882		1.2148	0.20126	1	20893	+		9444	13432	5251	5251	12357	12357					0.04934508537508009
FPLFETLTF	9	Unmodified	_FPLFETLTF_					0	0	0		Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|103|1|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|103|1|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|103|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.805908203125	2	557.794601	1113.57465	0.16195	9.0334E-05	-2.4125	-0.0013457	-2.2505	-0.0012553	557.7924610389477	69.475	1.5237	69.453	68.972	70.496	-0.022087					84	54	2	0	0	0	0.24913	1	17455	17455		12.532	5.2423	1	914610			9445	12380	5252	5252	12358	12358					0.02240395388548677
FPLGPPVE	8	Unmodified	_FPLGPPVE_					0	0	0			REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.23406982421875	2	428.234179	854.453805	0.011911	5.1009E-06	0.26576	0.00011381	0.27768	0.00011891	428.2342040434065	62.389	0.73818	62.381	62.094	62.832	-0.0085526					70	27	3	0	0	0	0.32313	1	15361	15361		28.173	5.7206	1	1004400	+		9446	19168	5253	5253	12359	12359					0.02075612465762333
FPLHLAEFRP	10	Unmodified	_FPLHLAEFRP_					0	0	0		ENST00000485835.1_1_17:38151035-38151804:+|nuORF	ENST00000485835.1_1_17:38151035-38151804:+|nuORF	ENST00000485835.1_1_17:38151035-38151804:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.8377685546875	2	613.837665	1225.66078	-0.13903	-8.5344E-05	-0.22313	-0.00013696	-0.36216	-0.00022231	613.8374658536226	60.129	1.0005	60.129	59.819	60.819	0					108	36	4	0	0	0	0.36698	1	14785	14785		15.847	6.4997	1	8969800			9447	11099	5254	5254	12360	12360					0.05697400013946208
FPLLPQPTF	9	Unmodified	_FPLLPQPTF_					0	0	0		ENST00000528173.5_1_11:46391373-46400221:+|nuORF	ENST00000528173.5_1_11:46391373-46400221:+|nuORF	ENST00000528173.5_1_11:46391373-46400221:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.279541015625	2	530.29731	1058.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.039	1	87.039	86.539	87.539	0								0	0	0	0.20953	1	22934	22934		19.439	1.304	1				9448	11581	5255	5255	12361	12361					0.053121189710282124
FPLLPQPTF	9	Unmodified	_FPLLPQPTF_					0	0	0		ENST00000528173.5_1_11:46391373-46400221:+|nuORF	ENST00000528173.5_1_11:46391373-46400221:+|nuORF	ENST00000528173.5_1_11:46391373-46400221:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2794189453125	2	530.29731	1058.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.187	1	87.187	86.687	87.687	0								0	0	0	0.22789	1	22979	22979		13.508	0.97634	1				9449	11581	5255	5255	12362	12362					0.053121189710282124
FPLNLKTV	8	Unmodified	_FPLNLKTV_					0	0	0		ENSG00000169291|ENST00000304760|SHE	ENSG00000169291|ENST00000304760|SHE	ENSG00000169291|ENST00000304760|SHE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.8000793457031	2	466.284203	930.553853	0.71308	0.0003325	-1.0873	-0.00050698	-0.3742	-0.00017448	466.28398313036513	56.139	0.33362	56.12	55.853	56.187	-0.019081					19	11	2	0	0	0	0.18459	1	13421	13421		45.7	13.394	1	306980			9450	6347	5256	5256	12363	12363					0.08579849799571093
FPLPQSLK	8	Unmodified	_FPLPQSLK_					0	0	0			REV__ENST00000398073.6_1_12:58216199-58216532:-|nuORF	REV__ENST00000398073.6_1_12:58216199-58216532:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7880554199219	2	465.276378	928.538203	0.077999	3.6291E-05	-2.0407	-0.00094948	-1.9627	-0.00091319	465.2763057218731	49.843	0.71037	49.888	49.425	50.136	0.044891					67	26	3	0	0	0	0.37937	1	11566	11566		21.747	0	1	468310	+		9451	20680	5257	5257	12364	12364					0.07107563282511364
FPLRHEIVDT	10	Unmodified	_FPLRHEIVDT_					0	0	0		ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.9007568359375	3	409.555784	1225.64552	-0.11813	-4.838E-05	0.13332	5.4602E-05	0.015193	6.2222E-06	409.5557462041114	43.917	0.64935	43.917	43.656	44.306	0					53	23	3	0	0	0	0.3183	1	9620	9620		8.4443	0	1	635470			9452	3330	5258	5258	12365	12365					0.04172488426070231
FPLSEPFYTL	10	Unmodified	_FPLSEPFYTL_					0	0	0		ENST00000438828.3_3_2:203777481-203777724:+|nuORF	ENST00000438828.3_3_2:203777481-203777724:+|nuORF	ENST00000438828.3_3_2:203777481-203777724:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.3143920898438	2	607.310615	1212.60668	0.25542	0.00015512	4.279	0.0025987	4.5344	0.0027538	607.3124247105877	59.559	1.0675	59.559	58.968	60.035	0					107	37	5	0	0	0	0.10934	5	14558	14392;14483;14515;14558;14607		46.021	9.4872	1	4056500			9453	10539	5259	5259	12366;12367;12368;12369;12370	12369					0.008877630717051943
FPLSSIVEI	9	Unmodified	_FPLSSIVEI_					0	0	0		ENSG00000143740|ENST00000617596|SNAP47;nc|ENSG00000143740|Q5SQN1-2|SNAP47;nc|ENSG00000143740|Q5SQN1|SNAP47	ENSG00000143740|ENST00000617596|SNAP47	ENSG00000143740|ENST00000617596|SNAP47	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7872009277344	2	502.786776	1003.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.621	1	84.701	84.201	85.201	0.080887								0	0	0	0.19013	1	22185	22185		25.399	4.9457	1				9454	4542	5260	5260	12371	12371					0.057361088715197184
FPLSSIVEI	9	Unmodified	_FPLSSIVEI_					0	0	0		ENSG00000143740|ENST00000617596|SNAP47;nc|ENSG00000143740|Q5SQN1-2|SNAP47;nc|ENSG00000143740|Q5SQN1|SNAP47	ENSG00000143740|ENST00000617596|SNAP47	ENSG00000143740|ENST00000617596|SNAP47	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.78704833984375	2	502.786776	1003.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.671	1	84.658	84.158	85.158	-0.01284								0	0	0	0.20639	1	22195	22195		20.454	0	1				9455	4542	5260	5260	12372	12372					0.057361088715197184
FPLTKVYVV	9	Unmodified	_FPLTKVYVV_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3206787109375	2	533.320786	1064.62702	0.54179	0.00028895	-0.09737	-5.1929E-05	0.44442	0.00023702	533.3205796158663	61.037	1.0905	61.037	60.664	61.755	0					78	40	2	0	0	0	0.011693	2	14980	14980;15036		76.825	47.743	1	3276100			9456	1237	5261	5261	12373;12374	12373					0.09728978522161924
FPLTKVYVV	9	Unmodified	_FPLTKVYVV_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3209838867188	2	533.320786	1064.62702	0.37504	0.00020002	0.26479	0.00014122	0.63982	0.00034123	533.320802282138	60.878	1.1209	60.975	60.608	61.729	0.096985					79	40	2	0	0	0	0.017549	3	14918	14918;14978;15027		67.838	38.757	1	3580000			9457	1237	5261	5261	12375;12376;12377	12375					0.09728978522161924
FPLTKVYVV	9	Unmodified	_FPLTKVYVV_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3208618164062	2	533.320786	1064.62702	0.53764	0.00028674	0.2278	0.00012149	0.76544	0.00040823	533.3207778201454	60.972	1.1036	60.962	60.596	61.699	-0.0094566					76	40	2	0	0	0	0.0037449	1	15001	15001		96.367	52.508	1	3308100			9458	1237	5261	5261	12378	12378					0.09728978522161924
FPLYVNNL	8	Unmodified	_FPLYVNNL_					0	0	0			REV__ENST00000542896.5_1_6:170887600-170887708:-|nuORF	REV__ENST00000542896.5_1_6:170887600-170887708:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2647399902344	2	490.26601	978.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.218	1	80.218	79.718	80.718	0								0	0	0	0.35466	1	20838	20838		12.532	3.1841	1		+		9459	22140	5262	5262	12379	12379					0.027349729028628644
FPMEIRQYL	9	Oxidation (M)	_FPM(Oxidation (M))EIRQYL_		FPM(1)EIRQYL		FPM(130)EIRQYL	0	0	1		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8077392578125	2	606.807716	1211.60088	0.38317	0.00023251	4.2948	0.0026061	4.6779	0.0028386	607.3121867433317	59.401	1.0293	59.492	58.928	59.957	0.091301					147	36	5	0	0	0	0.00045155	4	14437	14344;14391;14437;14461		129.77	85.29	1	4762900			9460	2643	5263	5263	12380;12381;12382;12383	12382		329			0.00354341288402793
FPMEIRQYL	9	Oxidation (M)	_FPM(Oxidation (M))EIRQYL_		FPM(1)EIRQYL		FPM(130)EIRQYL	0	0	1		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8076782226562	2	606.807716	1211.60088	0.44613	0.00027071	4.4565	0.0027042	4.9026	0.0029749	607.3123014708773	59.518	1.019	59.506	59.007	60.026	-0.011486					125	35	5	0	0	0	0.00078391	6	14448	14375;14398;14448;14499;14551;14607		125.53	70.026	1	4631200			9461	2643	5263	5263	12384;12385;12386;12387;12388;12389	12386		329			0.00354341288402793
FPMELRQFL	9	Oxidation (M)	_FPM(Oxidation (M))ELRQFL_		FPM(1)ELRQFL		FPM(100)ELRQFL	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.8103637695312	2	598.810259	1195.60597	0.44492	0.00026642	-0.45163	-0.00027044	-0.0067101	-4.0181E-06	598.8100436803277	67.25	1.0476	67.25	66.794	67.842	0					118	36	5	0	0	0	0.0028542	4	16868	16817;16868;16921;16972		103.42	78.02	1	1616700			9462	6287	5264	5264	12390;12391;12392;12393	12391		741			0.015986451510343613
FPMELRQFL	9	Oxidation (M)	_FPM(Oxidation (M))ELRQFL_		FPM(1)ELRQFL		FPM(150)ELRQFL	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.810302734375	2	598.810259	1195.60597	0.45668	0.00027347	-0.32019	-0.00019174	0.13649	8.173E-05	598.8100334182244	67.057	1.075	67.135	66.789	67.864	0.078041					115	37	4	0	0	0	4.3881E-05	4	16812	16767;16812;16857;16908		149.91	115.51	1	2064800			9463	6287	5264	5264	12394;12395;12396;12397	12395		741			0.015986451510343613
FPMELRQFL	9	Oxidation (M)	_FPM(Oxidation (M))ELRQFL_		FPM(1)ELRQFL		FPM(150)ELRQFL	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.8103637695312	2	598.810259	1195.60597	0.22787	0.00013645	-0.13746	-8.2315E-05	0.090404	5.4135E-05	598.8102093415617	67.337	1.1206	67.321	66.788	67.909	-0.016296					123	38	5	0	0	0	4.3881E-05	4	16856	16803;16856;16912;16975		149.91	111.74	1	2310800			9464	6287	5264	5264	12398;12399;12400;12401	12399		741			0.015986451510343613
FPMESMLTV	9	Unmodified	_FPMESMLTV_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7947998046875	2	527.751021	1053.48749	0.69639	0.00036752	-2.1383	-0.0011285	-1.4419	-0.00076096	527.7494898004154	86.087	0.54453	86.087	85.905	86.45	0					34	20	3	0	0	0	0.21905	1	22680	22680		23.148	6.2061	1	237100			9465	2610	5265	5265	12402	12402					-0.03711470149028173
FPMESMLTV	9	Unmodified	_FPMESMLTV_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7947998046875	2	527.751021	1053.48749	0.67393	0.00035567	-2.1673	-0.0011438	-1.4934	-0.00078814	527.7494588676801	86.175	0.44307	86.166	85.918	86.362	-0.0090027					32	16	3	0	0	0	0.21905	1	22664	22664		23.148	6.2061	1	194800			9466	2610	5265	5265	12403	12403					-0.03711470149028173
FPMILIGNKA	10	Unmodified	_FPMILIGNKA_					0	0	0		nc|ENSG00000133818|P62070-2|RRAS2;nc|ENSG00000133818|P62070-3|RRAS2;ENSG00000133818|ENST00000256196|RRAS2;nc|ENSG00000133818|P62070-4|RRAS2	nc|ENSG00000133818|P62070-2|RRAS2	nc|ENSG00000133818|P62070-2|RRAS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.8115234375	2	552.31772	1102.62089	0.49893	0.00027557	3.7804	0.002088	4.2793	0.0023635	552.3197360570326	36.775	0.62321	36.863	36.595	37.218	0.08741					44	22	3	0	0	0	0.35558	1	7566	7566		11.64	0.81637	1	276080			9467	3732	5266	5266	12404	12404					0.07368137019011556
FPMSPVTSV	9	Oxidation (M)	_FPM(Oxidation (M))SPVTSV_		FPM(1)SPVTSV		FPM(74)SPVTSV	0	0	1		nc|ENSG00000186818|Q8NHJ6-2|LILRB4;nc|ENSG00000186818|Q8NHJ6|LILRB4;ENSG00000186818|ENST00000695418|LILRB4;nc|ENSG00000186818|Q8NHJ6-3|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7416687011719	2	490.741511	979.468469	0.62936	0.00030885	-0.048857	-2.3976E-05	0.5805	0.00028488	490.74138472907197	54.387	1.3608	54.387	53.914	55.274	0					131	49	4	0	0	0	0.013258	4	12899	12852;12899;12954;13000		74.423	40.32	1	3045600			9468	7646	5267	5267	12405;12406;12407;12408	12406		841			-0.02208683448395732
FPMSPVTSV	9	Oxidation (M)	_FPM(Oxidation (M))SPVTSV_		FPM(1)SPVTSV		FPM(64)SPVTSV	0	0	1		nc|ENSG00000186818|Q8NHJ6-2|LILRB4;nc|ENSG00000186818|Q8NHJ6|LILRB4;ENSG00000186818|ENST00000695418|LILRB4;nc|ENSG00000186818|Q8NHJ6-3|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.74163818359375	2	490.741511	979.468469	0.58057	0.00028491	-0.054135	-2.6567E-05	0.52644	0.00025834	490.7414084733772	54.371	1.3048	54.434	53.876	55.181	0.063202					127	48	4	0	0	0	0.019896	4	12834	12834;12880;12929;12979		64.236	37.353	1	2712600			9469	7646	5267	5267	12409;12410;12411;12412	12409		841			-0.02208683448395732
FPMSPVTSV	9	Oxidation (M)	_FPM(Oxidation (M))SPVTSV_		FPM(1)SPVTSV		FPM(93)SPVTSV	0	0	1		nc|ENSG00000186818|Q8NHJ6-2|LILRB4;nc|ENSG00000186818|Q8NHJ6|LILRB4;ENSG00000186818|ENST00000695418|LILRB4;nc|ENSG00000186818|Q8NHJ6-3|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7418212890625	2	490.741511	979.468469	0.56591	0.00027772	-0.071031	-3.4858E-05	0.49488	0.00024286	490.7414311538979	54.457	1.4628	54.441	53.919	55.382	-0.015923					137	52	4	0	0	0	0.0041925	4	12951	12854;12904;12951;12999		92.822	52.865	1	2560500			9470	7646	5267	5267	12413;12414;12415;12416	12415		841			-0.02208683448395732
FPNIAVLIS	9	Unmodified	_FPNIAVLIS_					0	0	0			REV__nc|ENSG00000099331|Q13459-2|MYO9B	REV__nc|ENSG00000099331|Q13459-2|MYO9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7998962402344	2	487.289485	972.564418	0.51433	0.00025063	0.063494	3.094E-05	0.57783	0.00028157	487.28973170816	84.443	0.50352	84.431	84.207	84.71	-0.012871					29	20	2	0	0	0	0.24581	1	22150	22150		16.942	4.4107	1	140970	+		9471	14129	5268	5268	12417	12417					0.07703832454001258
FPNIPGKSL	9	Unmodified	_FPNIPGKSL_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.77935791015625	2	486.779285	971.544017	0.31058	0.00015118	-0.04318	-2.1019E-05	0.2674	0.00013016	486.77932419228614	49.777	1.8989	49.777	49.05	50.949	0					201	69	5	0	0	0	0.0008224	5	11553	11404;11452;11502;11553;11606		125.04	83.56	1	13821000			9472	4544	5269	5269	12418;12419;12420;12421;12422	12421					0.057106617941940385
FPNIPGKSL	9	Unmodified	_FPNIPGKSL_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.77935791015625	2	486.779285	971.544017	0.33478	0.00016296	-0.039816	-1.9382E-05	0.29496	0.00014358	486.77928845325016	49.726	1.7436	49.771	49.184	50.928	0.044891					200	64	5	0	0	0	0.0008224	5	11538	11399;11442;11489;11538;11588		125.04	86.862	1	14685000			9473	4544	5269	5269	12423;12424;12425;12426;12427	12426					0.057106617941940385
FPNIPGKSL	9	Unmodified	_FPNIPGKSL_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.77947998046875	2	486.779285	971.544017	0.35256	0.00017162	-0.062906	-3.0622E-05	0.28965	0.000141	486.7792904400267	49.735	2.024	49.755	49.003	51.027	0.020691					221	74	5	0	0	0	0.00012746	5	11535	11388;11435;11484;11535;11588		136.39	94.552	1	14142000			9474	4544	5269	5269	12428;12429;12430;12431;12432	12431					0.057106617941940385
FPNMFPPFL	9	Unmodified	_FPNMFPPFL_					0	0	0			REV__ENSG00000176239|ENST00000380219|OR51B6	REV__ENSG00000176239|ENST00000380219|OR51B6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.333984375	2	555.278063	1108.54157	0.39188	0.0002176	1.9617	0.0010893	2.3536	0.0013069	555.2789018429348	86.42	0.85299	86.504	86.053	86.906	0.084251					49	34	2	0	0	0	0.25202	1	22689	22689		10.824	1.4765	1	212060	+		9475	17928	5270	5270	12433	12433					-0.008355099351092576
FPNNIQIGGL	10	Unmodified	_FPNNIQIGGL_					0	0	0		ENST00000474198.1_1_5:152870409-152873630:+|nuORF;GRIA1|p.T577Ifs*5|1|0.02|ENSG00000155511|chr5:153705973-153705974|-/TAGT|frameshift_variant;nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000155511|P42261-2|GRIA1;ENSG00000155511|ENST00000285900|GRIA1	ENST00000474198.1_1_5:152870409-152873630:+|nuORF	ENST00000474198.1_1_5:152870409-152873630:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.7822265625	2	536.792924	1071.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.973	1	59.973	59.473	60.473	0								0	0	0	0.32814	1	14637	14637		24.021	3.606	1				9476	5179	5271	5271	12434	12434					0.03837145334591696
FPNNYVTKI	9	Unmodified	_FPNNYVTKI_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.8236694335938	2	548.295299	1094.57605	0.62622	0.00034335	-0.48613	-0.00026654	0.14009	7.6809E-05	548.2951191033861	48.243	0.50526	48.243	48.077	48.582	0					27	17	2	0	0	0	0.1558	1	11005	11005		41.956	14.327	1	239750			9477	5309	5272	5272	12435	12435					0.032540294773070855
FPNNYVTKI	9	Unmodified	_FPNNYVTKI_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.823974609375	2	548.295299	1094.57605	0.89695	0.0004918	-0.56276	-0.00030856	0.33419	0.00018324	548.294925565548	48.328	0.5341	48.376	48.158	48.693	0.047523					30	19	2	0	0	0	0.1558	1	11003	11003		41.956	9.1699	1	270750			9478	5309	5272	5272	12436	12436					0.032540294773070855
FPNNYVTKI	9	Unmodified	_FPNNYVTKI_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8237915039062	2	548.295299	1094.57605	0.73062	0.0004006	0.18373	0.00010074	0.91435	0.00050133	548.2953641998777	48.095	0.55007	48.139	48.037	48.588	0.04332					27	20	2	0	0	0	0.1303	1	10985	10985		42.312	9.5268	1	269970			9479	5309	5272	5272	12437	12437					0.032540294773070855
FPPETSASV	9	Unmodified	_FPPETSASV_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7290954589844	2	467.729458	933.444362	0.34956	0.0001635	-0.62639	-0.00029298	-0.27683	-0.00012948	467.7292140374831	45.647	1.6485	45.712	44.605	46.253	0.065048					94	60	2	0	0	0	0.17787	1	10294	10294		26.884	5.137	1	208880			9480	4547	5273	5273	12438	12438					-0.025022006104222783
FPPGVVNI	8	Unmodified	_FPPGVVNI_					0	0	0		ENSG00000165092|ENST00000297785|ALDH1A1;ENST00000482210.5_1_9:75538907-75567871:-|nuORF;ENSG00000184254|ENST00000329841|ALDH1A3;ENSG00000137124|ENST00000377698|ALDH1B1;nc|ENSG00000111275|P05091-2|ALDH2;ENST00000548536.1_1_12:112213467-112247376:+|nuORF;ENSG00000111275|ENST00000261733|ALDH2	ENSG00000165092|ENST00000297785|ALDH1A1;nc|ENSG00000111275|P05091-2|ALDH2	ENSG00000165092|ENST00000297785|ALDH1A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7511901855469	2	421.742171	841.469789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.682	1	66.668	66.168	67.168	-0.013588								0	0	0	0.33941	1	16691	16691		19.439	4.8573	1				9481	5922;2359	5274	5274	12439	12439					0.04271318702649296
FPPLEKPVL	9	Unmodified	_FPPLEKPVL_					0	0	0			REV__ENST00000245414.8_1_5:131819152-131819224:-|nuORF	REV__ENST00000245414.8_1_5:131819152-131819224:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3472900390625	2	520.312961	1038.61137	0.45455	0.00023651	-0.26896	-0.00013994	0.18559	9.6566E-05	520.3125868455488	71.593	0.55718	71.566	71.262	71.819	-0.027267					33	19	2	0	0	0	0.22674	1	18248	18248		17.113	0	1	717500	+		9482	19502	5275	5275	12440	12440					0.09360692005134297
FPPLPPLVR	9	Unmodified	_FPPLPPLVR_					0	0	0		ENST00000439413.2_1_7:54850836-54872378:+|nuORF	ENST00000439413.2_1_7:54850836-54872378:+|nuORF	ENST00000439413.2_1_7:54850836-54872378:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3176879882812	2	518.32112	1034.62769	0.59337	0.00030756	-2.8349	-0.0014694	-2.2415	-0.0011618	518.3191520071003	65.956	1.5303	65.956	65.518	67.048	0					143	54	3	0	0	0	0.17787	2	16474	16474;16515		26.884	5.137	1	976140			9483	10545	5276	5276	12441;12442	12441					0.11175817961907342
FPPLPPLVR	9	Unmodified	_FPPLPPLVR_					0	0	0		ENST00000439413.2_1_7:54850836-54872378:+|nuORF	ENST00000439413.2_1_7:54850836-54872378:+|nuORF	ENST00000439413.2_1_7:54850836-54872378:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3208618164062	2	518.32112	1034.62769	0.50005	0.00025918	-2.8402	-0.0014721	-2.3401	-0.0012129	518.3193174006441	65.845	1.5324	65.934	65.519	67.051	0.088882					141	55	3	0	0	0	0.12846	2	16505	16441;16505		34.102	5.6156	1	891440			9484	10545	5276	5276	12443;12444	12444					0.11175817961907342
FPPLPPLVR	9	Unmodified	_FPPLPPLVR_					0	0	0		ENST00000439413.2_1_7:54850836-54872378:+|nuORF	ENST00000439413.2_1_7:54850836-54872378:+|nuORF	ENST00000439413.2_1_7:54850836-54872378:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.31787109375	2	518.32112	1034.62769	0.36413	0.00018874	-2.6235	-0.0013598	-2.2594	-0.0011711	518.3193426475061	65.94	1.3972	65.927	65.556	66.953	-0.012939					130	50	3	0	0	0	0.17787	1	16495	16495		26.884	5.137	1	914730			9485	10545	5276	5276	12445	12445					0.11175817961907342
FPPLPRPLV	9	Unmodified	_FPPLPRPLV_					0	0	0		ENST00000549393.1_17:6916754-6917028:+|nuORF	ENST00000549393.1_17:6916754-6917028:+|nuORF	ENST00000549393.1_17:6916754-6917028:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3215942382812	2	518.32112	1034.62769	0.59337	0.00030756	-2.8349	-0.0014694	-2.2415	-0.0011618	518.3191520071003	65.956	1.5303	65.956	65.518	67.048	0					143	54	3	0	0	0	0.088391	1	16561	16561		39.957	5.8549	1	976140			9486	11785	5277	5277	12446	12446					0.11175817961884604
FPPLPRPLV	9	Unmodified	_FPPLPRPLV_					0	0	0		ENST00000549393.1_17:6916754-6917028:+|nuORF	ENST00000549393.1_17:6916754-6917028:+|nuORF	ENST00000549393.1_17:6916754-6917028:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3189086914062	2	518.32112	1034.62769	0.50005	0.00025918	-2.8402	-0.0014721	-2.3401	-0.0012129	518.3193174006441	65.845	1.5324	65.934	65.519	67.051	0.088882					141	55	3	0	0	0	0.17787	1	16495	16495		26.884	0	1	891440			9487	11785	5277	5277	12447	12447					0.11175817961884604
FPPLPRPLV	9	Unmodified	_FPPLPRPLV_					0	0	0		ENST00000549393.1_17:6916754-6917028:+|nuORF	ENST00000549393.1_17:6916754-6917028:+|nuORF	ENST00000549393.1_17:6916754-6917028:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3212890625	2	518.32112	1034.62769	0.36413	0.00018874	-2.6235	-0.0013598	-2.2594	-0.0011711	518.3193426475061	65.94	1.3972	65.927	65.556	66.953	-0.012939					130	50	3	0	0	0	0.12846	2	16530	16445;16530		34.102	5.137	1	914730			9488	11785	5277	5277	12448;12449	12449					0.11175817961884604
FPPLVKKPFR	10	Unmodified	_FPPLVKKPFR_					0	0	0			REV__ENST00000301332.2_1_8:145699090-145699315:+|nuORF	REV__ENST00000301332.2_1_8:145699090-145699315:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.7185363769531	3	410.257009	1227.7492	0.23462	9.6255E-05	1.0447	0.00042861	1.2794	0.00052486	410.25742901482084	82.736	0.40739	82.715	82.541	82.949	-0.020584					26	15	2	0	0	0	0.32165	1	21629	21629		0.69767	0.07084	1	150340	+		9489	19821	5278	5278	12450	12450					0.14443440324384937
FPPPLSPPPYP	11	Unmodified	_FPPPLSPPPYP_					0	0	0		ENST00000370978.8_1_X:129394438-129402842:-|nuORF	ENST00000370978.8_1_X:129394438-129402842:-|nuORF	ENST00000370978.8_1_X:129394438-129402842:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.820556640625	2	604.82115	1207.62775	0.36717	0.00022207	-1.0433	-0.00063103	-0.67617	-0.00040896	605.3222855137575	76.278	0.83723	76.278	75.996	76.833	0					65	29	3	0	0	0	0.20634	1	19620	19620		30.637	7.9003	1	407580			9490	9808	5279	5279	12451	12451					0.032237731712484674
FPPPVADFI	9	Unmodified	_FPPPVADFI_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000589956.5_1_19:12822112-12831764:-|nuORF;ENST00000588484.1_1_19:12826020-12830096:-|nuORF	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7686767578125	2	501.768386	1001.52222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.044	1	86.044	85.544	86.544	0								0	0	0	0.17683	1	22629	22629		28.487	1.6032	1				9491	1995	5280	5280	12452	12452					0.02151857045600991
FPPPVADFI	9	Unmodified	_FPPPVADFI_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000589956.5_1_19:12822112-12831764:-|nuORF;ENST00000588484.1_1_19:12826020-12830096:-|nuORF	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.76837158203125	2	501.768386	1001.52222	0.51609	0.00025896	0.71925	0.0003609	1.2353	0.00061986	501.76838371793247	85.259	2.7196	85.34	84.002	86.722	0.080879					121	97	2	0	0	0	0.11517	2	22372	22372;22650		36.044	14.298	1	256020			9492	1995	5280	5280	12453;12454	12453					0.02151857045600991
FPPPVADFI	9	Unmodified	_FPPPVADFI_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000589956.5_1_19:12822112-12831764:-|nuORF;ENST00000588484.1_1_19:12826020-12830096:-|nuORF	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.76824951171875	2	501.768386	1001.52222	0.53318	0.00026753	0.58499	0.00029353	1.1182	0.00056106	501.7684190923355	85.247	3.0712	85.235	84.283	87.354	-0.01284					138	121	2	0	0	0	0.12846	5	22601	22488;22601;22610;22708;22729		34.102	12.356	1	314230			9493	1995	5280	5280	12455;12456;12457;12458;12459	12456					0.02151857045600991
FPPVPRNAL	9	Unmodified	_FPPVPRNAL_					0	0	0		ENST00000480785.5_1_6:32916643-32917198:-|nuORF	ENST00000480785.5_1_6:32916643-32917198:-|nuORF	ENST00000480785.5_1_6:32916643-32917198:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2770690917969	2	505.792727	1009.5709	0.57131	0.00028896	-0.81802	-0.00041375	-0.24671	-0.00012478	505.79206905070043	54.149	0.74598	54.149	53.806	54.552	0					40	26	2	0	0	0	0.21905	1	12815	12815		7.2892	0	1	364730			9494	11014	5281	5281	12460	12460					0.06649770405374511
FPPVPRNAL	9	Unmodified	_FPPVPRNAL_					0	0	0		ENST00000480785.5_1_6:32916643-32917198:-|nuORF	ENST00000480785.5_1_6:32916643-32917198:-|nuORF	ENST00000480785.5_1_6:32916643-32917198:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2770690917969	2	505.792727	1009.5709	0.49441	0.00025007	-0.86674	-0.00043839	-0.37233	-0.00018832	505.79204585723784	54.355	0.62582	54.339	53.949	54.575	-0.015923					33	21	2	0	0	0	0.23783	1	12874	12874		18.135	2.2878	1	363450			9495	11014	5281	5281	12461	12461					0.06649770405374511
FPPWHSPHK	9	Unmodified	_FPPWHSPHK_					0	0	0			REV__ENST00000489247.1_1_X:107393350-107396939:+|nuORF	REV__ENST00000489247.1_1_X:107393350-107396939:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3059692382812	2	566.787976	1131.5614	0.42396	0.00024029	0.91565	0.00051898	1.3396	0.00075927	566.7884883767866	31.967	0.91947	31.967	31.772	32.692	0					61	32	2	0	0	0	0.24581	1	6111	6111		16.942	0.37642	1	580820	+		9496	14288	5282	5282	12462	12462					0.0008800211983270856
FPQRSVPFL	9	Unmodified	_FPQRSVPFL_					0	0	0		ENST00000559946.1_1_14:103016683-103021286:+|nuORF	ENST00000559946.1_1_14:103016683-103021286:+|nuORF	ENST00000559946.1_1_14:103016683-103021286:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.80615234375	2	545.805834	1089.59712	0.59258	0.00032343	-0.47271	-0.00025801	0.11987	6.5426E-05	545.8056205163504	65.581	1.4688	65.581	65.19	66.659	0					106	52	3	0	0	0	0.18208	1	16376	16376		26.268	0.86883	1	1344800			9497	11890	5283	5283	12463	12463					0.055900395768503586
FPQSRRLSQF	10	Unmodified	_FPQSRRLSQF_					0	0	0			REV__ENST00000357681.9_1_1:203710173-203710329:+|nuORF	REV__ENST00000357681.9_1_1:203710173-203710329:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.8948669433594	3	422.563161	1264.66765	-0.40419	-0.00017079	0.28144	0.00011893	-0.12274	-5.1866E-05	422.5633474897745	12.869	0.44484	12.801	12.52	12.965	-0.067495					23	14	2	0	0	0	0.31889	1	277	277		3.3196	0	1	24505	+		9498	20219	5284	5284	12464	12464					0.045907128945145814
FPQSRRLSQF	10	Unmodified	_FPQSRRLSQF_					0	0	0			REV__ENST00000357681.9_1_1:203710173-203710329:+|nuORF	REV__ENST00000357681.9_1_1:203710173-203710329:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	422.563161	1264.66765	-0.32796	-0.00013858	-0.76104	-0.00032159	-1.089	-0.00046017	422.56268049145217	12.692	0.29669	12.593	12.46	12.757	-0.099291	-0.10058	-0.00076878	NaN	7.9454	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23722	+		9499	20219	5284	5284							0.045907128945145814
FPQVGRTAL	9	Unmodified	_FPQVGRTAL_					0	0	0		ENSG00000186810|ENST00000373693|CXCR3;nc|ENSG00000186810|P49682-2|CXCR3	ENSG00000186810|ENST00000373693|CXCR3	ENSG00000186810|ENST00000373693|CXCR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7818603515625	2	494.782359	987.550165	0.14813	7.3293E-05	-0.89836	-0.00044449	-0.75023	-0.0003712	494.7816312829563	46.377	0.75822	46.377	45.917	46.675	0					61	27	3	0	0	0	0.015924	1	10431	10431		70.332	28.237	1	1419900			9500	7644	5285	5285	12465	12465					0.05589180025708629
FPQVGRTAL	9	Unmodified	_FPQVGRTAL_					0	0	0		ENSG00000186810|ENST00000373693|CXCR3;nc|ENSG00000186810|P49682-2|CXCR3	ENSG00000186810|ENST00000373693|CXCR3	ENSG00000186810|ENST00000373693|CXCR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7819519042969	2	494.782359	987.550165	0.3108	0.00015378	-1.281	-0.00063382	-0.9702	-0.00048004	494.78149723393807	46.214	0.84407	46.274	45.9	46.745	0.059837					65	30	3	0	0	0	0.003673	1	10397	10397		96.936	54.841	1	1281800			9501	7644	5285	5285	12466	12466					0.05589180025708629
FPQVGRTAL	9	Unmodified	_FPQVGRTAL_					0	0	0		ENSG00000186810|ENST00000373693|CXCR3;nc|ENSG00000186810|P49682-2|CXCR3	ENSG00000186810|ENST00000373693|CXCR3	ENSG00000186810|ENST00000373693|CXCR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7816467285156	2	494.782359	987.550165	0.2334	0.00011548	-0.76143	-0.00037674	-0.52804	-0.00026126	494.7819045093111	46.275	0.6492	46.34	46.07	46.719	0.065048					59	23	4	0	0	0	0.017549	1	10388	10388		67.838	25.744	1	1166300			9502	7644	5285	5285	12467	12467					0.05589180025708629
FPQVQPQI	8	Unmodified	_FPQVQPQI_					0	0	0		ENSG00000012504|ENST00000392986|NR1H4;nc|ENSG00000012504|Q96RI1|NR1H4;nc|ENSG00000012504|Q96RI1-5|NR1H4;nc|ENSG00000012504|Q96RI1-2|NR1H4;nc|ENSG00000012504|Q96RI1-4|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.76373291015625	2	478.763635	955.512717	0.3973	0.00019021	0.073508	3.5193E-05	0.47081	0.0002254	478.7635665140921	58.756	0.61689	58.742	58.496	59.113	-0.014267					55	21	4	0	0	0	0.25425	1	14294	14294		36.044	7.5574	1	1006300			9503	452	5286	5286	12468	12468					0.03318088760090632
FPRCLNVK	8	Unmodified	_FPRCLNVK_					0	0	0			REV__ENSG00000108021|ENST00000695737|TASOR2	REV__ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2979736328125	2	488.77348	975.532406	0.33893	0.00016566	2.263	0.0011061	2.6019	0.0012717	488.7746532978455	19.801	0.34016	19.685	19.612	19.952	-0.11592					15	11	2	0	0	0	0.34247	1	2357	2357		8.5933	8.5933	1	30514	+		9504	14580	5287	5287	12469	12469					0.043661414992016034
FPRDPEIEM	9	Oxidation (M)	_FPRDPEIEM(Oxidation (M))_		FPRDPEIEM(1)		FPRDPEIEM(150)	0	0	1		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;nc|ENSG00000162692|P19320-3|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.2660522460938	2	575.265881	1148.51721	0.37635	0.0002165	-0.031377	-1.805E-05	0.34497	0.00019845	575.265827959557	39.605	1.728	39.698	39.201	40.929	0.09267					186	62	5	0	0	0	5.4053E-05	5	8341	8293;8341;8392;8444;8500		148.27	104.41	1	8146000			9505	5601	5288	5288	12470;12471;12472;12473;12474	12471		675			-0.051108148792991415
FPRDPEIEM	9	Oxidation (M)	_FPRDPEIEM(Oxidation (M))_		FPRDPEIEM(1)		FPRDPEIEM(160)	0	0	1		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;nc|ENSG00000162692|P19320-3|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.2660522460938	2	575.265881	1148.51721	0.24077	0.00013851	0.072662	4.18E-05	0.31343	0.00018031	575.2658813297231	39.556	2.1107	39.656	39.1	41.211	0.099407					209	76	5	0	0	0	4.984E-07	6	8343	8293;8343;8385;8434;8478;8525		160.69	108.42	1	8537200			9506	5601	5288	5288	12475;12476;12477;12478;12479;12480	12476		675			-0.051108148792991415
FPREPRPKL	9	Unmodified	_FPREPRPKL_					0	0	0		ENSG00000152518|ENST00000282388|ZFP36L2	ENSG00000152518|ENST00000282388|ZFP36L2	ENSG00000152518|ENST00000282388|ZFP36L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3377075195312	2	570.337833	1138.66111	0.38622	0.00022028	-0.60458	-0.00034481	-0.21835	-0.00012454	570.3373871847076	29.889	0.78146	29.889	29.413	30.194	0					63	27	3	0	0	0	0.12279	2	5384	5384;5451		34.932	20.094	1	278730			9507	5023	5289	5289	12481;12482	12481					0.09732819733812903
FPREPRPKL	9	Unmodified	_FPREPRPKL_					0	0	0		ENSG00000152518|ENST00000282388|ZFP36L2	ENSG00000152518|ENST00000282388|ZFP36L2	ENSG00000152518|ENST00000282388|ZFP36L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3377075195312	2	570.337833	1138.66111	0.4119	0.00023492	-0.68721	-0.00039194	-0.27531	-0.00015702	570.3374378507046	29.799	0.95128	29.811	29.331	30.283	0.012266					66	32	3	0	0	0	0.07944	2	5382	5382;5435		41.956	27.55	1	274910			9508	5023	5289	5289	12483;12484	12483					0.09732819733812903
FPREPRPKL	9	Unmodified	_FPREPRPKL_					0	0	0		ENSG00000152518|ENST00000282388|ZFP36L2	ENSG00000152518|ENST00000282388|ZFP36L2	ENSG00000152518|ENST00000282388|ZFP36L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.3378295898438	2	570.337833	1138.66111	0.0010873	6.2014E-07	-0.30682	-0.00017499	-0.30573	-0.00017437	570.3376813325979	29.861	0.89836	29.874	29.248	30.146	0.013474					63	30	3	0	0	0	0.018449	1	5391	5391		66.457	41.466	1	309250			9509	5023	5289	5289	12485	12485					0.09732819733812903
FPRFGGSL	8	Unmodified	_FPRFGGSL_					0	0	0		ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.2684326171875	2	440.73742	879.460287	0.10837	4.7764E-05	0.30359	0.00013381	0.41197	0.00018157	440.737353527103	52.286	0.66287	52.286	51.86	52.523	0					36	23	2	0	0	0	0.28088	1	12240	12240		39.957	11.47	1	403700			9510	6766	5290	5290	12486	12486					0.015735504171516368
FPRFGGSL	8	Unmodified	_FPRFGGSL_					0	0	0		ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	ENSG00000174004|ENST00000328557|NRROS	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	440.73742	879.460287	0.1301	5.7339E-05	-0.7904	-0.00034836	-0.66031	-0.00029102	440.7373846257964	52.175	0.61922	52.226	51.846	52.465	0.050575	-0.076499	-0.00074531	NaN	39.957	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383900			9511	6766	5290	5290							0.015735504171516368
FPRFRNREL	9	Unmodified	_FPRFRNREL_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.23187255859375	3	412.231634	1233.67307	0.14507	5.9802E-05	-0.69865	-0.000288	-0.55358	-0.0002282	412.231538763672	33.689	1.9412	33.689	33.259	35.2	0					214	69	5	0	0	0	0.015027	4	6604	6506;6554;6604;6656		71.708	45.687	1	11482000			9512	1403	5291	5291	12487;12488;12489;12490	12489					0.06558436476984753
FPRFRNREL	9	Unmodified	_FPRFRNREL_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	617.8433227539062	2	617.843813	1233.67307	0.45404	0.00028053	-0.30464	-0.00018822	0.1494	9.2309E-05	617.8436688504632	33.663	0.74173	33.663	33.393	34.135	0					58	26	3	0	0	0	0.083138	2	6548	6548;6598		36.506	22.6	1	670090			9513	1403	5291	5291	12491;12492	12491					0.06558436476984753
FPRFRNREL	9	Unmodified	_FPRFRNREL_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2313537597656	3	412.231634	1233.67307	0.48527	0.00020004	-1.2074	-0.00049773	-0.72215	-0.00029769	412.23135901655223	33.442	1.5967	33.509	33.182	34.779	0.06636					192	57	5	0	0	0	0.033439	4	6485	6440;6485;6528;6570		59.052	33.032	1	11939000			9514	1403	5291	5291	12493;12494;12495;12496	12494					0.06558436476984753
FPRFRNREL	9	Unmodified	_FPRFRNREL_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	617.8433227539062	2	617.843813	1233.67307	0.43032	0.00026587	-0.33109	-0.00020456	0.099234	6.1311E-05	617.8436498100353	33.474	0.71762	33.54	33.266	33.983	0.06636					63	25	3	0	0	0	0.18378	2	6474	6474;6524		23.79	9.8837	1	585560			9515	1403	5291	5291	12497;12498	12497					0.06558436476984753
FPRFRNREL	9	Unmodified	_FPRFRNREL_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.23138427734375	3	412.231634	1233.67307	0.0024644	1.0159E-06	-0.67035	-0.00027634	-0.66788	-0.00027532	412.23156482481323	33.482	1.7241	33.549	33.158	34.882	0.066704					197	61	5	0	0	0	0.038291	4	6491	6444;6491;6541;6581		57.249	40.683	1	13035000			9516	1403	5291	5291	12499;12500;12501;12502	12500					0.06558436476984753
FPRFRNREL	9	Unmodified	_FPRFRNREL_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	617.8433837890625	2	617.843813	1233.67307	0.043314	2.6761E-05	-0.033638	-2.0783E-05	0.0096765	5.9786E-06	617.8438412334636	33.474	0.74995	33.541	33.271	34.021	0.066704					62	26	3	0	0	0	0.12765	2	6487	6487;6536		36.506	17.249	1	726260			9517	1403	5291	5291	12503;12504	12503					0.06558436476984753
FPRGHVEEL	9	Unmodified	_FPRGHVEEL_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.794921875	2	542.282723	1082.55089	0.6652	0.00036073	-0.34782	-0.00018862	0.31738	0.00017211	542.2825473333851	32.061	0.9817	32.061	31.8	32.782	0					56	34	2	0	0	0	0.25431	1	6117	6117		9.3831	0	1	233730			9518	273	5292	5292	12505	12505					0.012919746747684258
FPRHIEPEL	9	Unmodified	_FPRHIEPEL_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.3060913085938	2	569.306198	1136.59784	-0.035446	-2.0179E-05	0.50697	0.00028862	0.47153	0.00026844	569.3062072374101	42.391	0.67468	42.391	42.141	42.816	0					48	24	3	0	0	0	0.017549	2	9215	9188;9215		67.838	0	1	671080			9519	3058	5293	5293	12506;12507	12507					0.035008342259061465
FPRHIEPEL	9	Unmodified	_FPRHIEPEL_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3060913085938	2	569.306198	1136.59784	0.45347	0.00025817	-0.08495	-4.8362E-05	0.36852	0.0002098	569.305920487735	42.16	0.79838	42.245	41.932	42.731	0.085197					51	28	3	0	0	0	0.01909	1	9146	9146		65.474	0	1	607260			9520	3058	5293	5293	12508	12508					0.035008342259061465
FPRHIEPEL	9	Unmodified	_FPRHIEPEL_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.3062744140625	2	569.306198	1136.59784	0.40206	0.0002289	0.20215	0.00011509	0.60421	0.00034398	569.3060589924444	42.052	0.67866	42.143	41.929	42.607	0.091362					47	23	3	0	0	0	0.0041491	2	9141	9092;9141		93.166	0	1	785700			9521	3058	5293	5293	12509;12510	12510					0.035008342259061465
FPRLDINV	8	Unmodified	_FPRLDINV_					0	0	0		ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	ENSG00000198056|ENST00000338193|PRIM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.8057556152344	2	487.276909	972.539266	0.35442	0.0001727	-0.18529	-9.029E-05	0.16913	8.2412E-05	487.2766888654971	62.639	0.60329	62.736	62.414	63.017	0.096985					33	21	2	0	0	0	0.31302	1	15429	15429		22.736	6.8891	1	287740			9522	8032	5294	5294	12511	12511					0.0518977765142381
FPRLKYPLEEF	11	Unmodified	_FPRLKYPLEEF_					0	0	0		ENSG00000183044|ENST00000268251|ABAT;ENST00000566590.5_1_16:8807641-8875284:+|nuORF	ENSG00000183044|ENST00000268251|ABAT	ENSG00000183044|ENST00000268251|ABAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2623596191406	3	480.262489	1437.76564	0.14667	7.0439E-05	-0.63712	-0.00030599	-0.49046	-0.00023555	480.2623212037272	24.688	1.5519	24.688	24.162	25.714	0					196	52	5	0	0	0	0.41892	2	3828	3816;3828		8.7518	0.25323	1	1942100			9523	7341	5295	5295	12512;12513	12513					0.06426476699834893
FPRLKYPLEEF	11	Unmodified	_FPRLKYPLEEF_					0	0	0		ENSG00000183044|ENST00000268251|ABAT;ENST00000566590.5_1_16:8807641-8875284:+|nuORF	ENSG00000183044|ENST00000268251|ABAT	ENSG00000183044|ENST00000268251|ABAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.262451171875	3	480.262489	1437.76564	-0.018701	-8.9815E-06	-0.66125	-0.00031757	-0.67995	-0.00032655	480.26228973999275	24.752	1.4209	24.721	24.344	25.764	-0.031408					170	49	5	0	0	0	0.39698	1	3838	3838		11.631	2.8796	1	2928500			9524	7341	5295	5295	12514	12514					0.06426476699834893
FPRLKYPLEEF	11	Unmodified	_FPRLKYPLEEF_					0	0	0		ENSG00000183044|ENST00000268251|ABAT;ENST00000566590.5_1_16:8807641-8875284:+|nuORF	ENSG00000183044|ENST00000268251|ABAT	ENSG00000183044|ENST00000268251|ABAT	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	480.262489	1437.76564	-0.018701	-8.9815E-06	-0.66125	-0.00031757	-0.67995	-0.00032655	480.26228973999275	24.752	1.4209	24.721	24.344	25.764	-0.031408	-0.0012809	1.9542E-05	NaN	11.631	170	49	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2928500			9525	7341	5295	5295							0.06426476699834893
FPRLLDTKL	9	Unmodified	_FPRLLDTKL_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8348388671875	2	551.834591	1101.65463	0.71978	0.0003972	-0.099041	-5.4654E-05	0.62074	0.00034255	551.8344083505052	54.667	1.0576	54.667	54.188	55.246	0					90	38	4	0	0	0	0.069366	2	13036	12985;13036		45.7	9.1934	1	1676100			9526	4330	5296	5296	12515;12516	12516					0.10786881782405544
FPRLLDTKL	9	Unmodified	_FPRLLDTKL_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8349609375	2	551.834591	1101.65463	0.69336	0.00038262	-0.082234	-4.538E-05	0.61113	0.00033724	551.8344376082612	54.597	0.98871	54.66	54.168	55.157	0.063202					91	36	4	0	0	0	0.032589	3	13013	12958;12967;13013		59.368	15.596	1	1658100			9527	4330	5296	5296	12517;12518;12519	12519					0.10786881782405544
FPRLLDTKL	9	Unmodified	_FPRLLDTKL_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8348388671875	2	551.834591	1101.65463	0.71646	0.00039537	-0.12726	-7.0226E-05	0.5892	0.00032514	551.8343953551461	54.83	0.92835	54.814	54.335	55.264	-0.015923					80	33	4	0	0	0	0.053988	2	13019	13019;13070		51.415	14.909	1	2022300			9528	4330	5296	5296	12520;12521	12520					0.10786881782405544
FPRNLAKSV	9	Unmodified	_FPRNLAKSV_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1;ENSG00000131459|ENST00000253778|GFPT2	nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000131459|ENST00000253778|GFPT2	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7720336914062	2	516.303458	1030.59236	0.20266	0.00010463	0.78313	0.00040433	0.98579	0.00050897	516.3042484395596	31.649	0.56438	31.649	31.361	31.925	0					29	19	3	0	0	0	0.23749	1	5915	5915		20.415	6.5085	1	430740			9529	8066;3566	5297	5297	12522	12522					0.07829155434069435
FPRNLAKSV	9	Unmodified	_FPRNLAKSV_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1;ENSG00000131459|ENST00000253778|GFPT2	nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000131459|ENST00000253778|GFPT2	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7717895507812	2	516.303458	1030.59236	0.19332	9.9813E-05	0.21758	0.00011234	0.41091	0.00021215	516.3038232121041	31.554	0.59516	31.596	31.399	31.994	0.042364					32	20	2	0	0	0	0.18936	1	5935	5935		20.415	7.3721	1	858380			9530	8066;3566	5297	5297	12523	12523					0.07829155434069435
FPRNLAKSV	9	Unmodified	_FPRNLAKSV_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1;ENSG00000131459|ENST00000253778|GFPT2	nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000131459|ENST00000253778|GFPT2	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.77197265625	2	516.303458	1030.59236	0.2242	0.00011576	0.67387	0.00034792	0.89808	0.00046368	516.3041487857815	31.507	0.5304	31.548	31.334	31.864	0.040991					34	18	3	0	0	0	0.22674	1	5921	5921		22.736	5.6234	1	675580			9531	8066;3566	5297	5297	12524	12524					0.07829155434069435
FPRQVQKQ	8	Unmodified	_FPRQVQKQ_					0	0	0			REV__ENST00000281172.9_1_12:15822752-15835827:-|nuORF	REV__ENST00000281172.9_1_12:15822752-15835827:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.3042602539062	2	515.793258	1029.57196	0.23969	0.00012363	-0.19552	-0.00010085	0.044169	2.2782E-05	515.7932427410625	26.627	0.57388	26.627	26.379	26.953	0					27	19	2	0	0	0	0.39956	1	4422	4422		19.439	1.2926	1	189190	+		9532	19713	5298	5298	12525	12525					0.05835984774262215
FPRRRGWSLT	10	Unmodified	_FPRRRGWSLT_					0	0	0			REV__nc|ENSG00000022567|Q5BKX6-2|SLC45A4	REV__nc|ENSG00000022567|Q5BKX6-2|SLC45A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.5550842285156	3	425.907151	1274.69962	0.12442	5.2991E-05	0.9192	0.00039149	1.0436	0.00044448	425.907515394396	29.494	0.44526	29.494	29.355	29.801	0					30	15	3	0	0	0	0.32095	1	5262	5262		3.0723	0	1	126680	+		9533	13466	5299	5299	12526	12526					0.07326125368331304
FPRSPGQPSSL	11	Unmodified	_FPRSPGQPSSL_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.806640625	2	586.806562	1171.59857	0.21577	0.00012661	0.32075	0.00018822	0.53651	0.00031483	586.8068332081988	40	0.8286	40	39.644	40.473	0					63	29	3	0	0	0	0.0057759	2	8458	8458;8509		78.61	38.661	1	529600			9534	8049	5300	5300	12527;12528	12527					0.019636288749552477
FPRSPGQPSSL	11	Unmodified	_FPRSPGQPSSL_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8067626953125	2	586.806562	1171.59857	0.38452	0.00022564	-0.082515	-4.842E-05	0.302	0.00017722	586.8064510079344	39.796	0.60318	39.889	39.548	40.151	0.09267					51	20	3	0	0	0	0.0068129	2	8410	8410;8462		76.416	36.466	1	658960			9535	8049	5300	5300	12529;12530	12529					0.019636288749552477
FPRSPGQPSSL	11	Unmodified	_FPRSPGQPSSL_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.806640625	2	586.806562	1171.59857	0.36048	0.00021153	-0.11204	-6.5744E-05	0.24844	0.00014579	586.8064328440981	39.722	0.66232	39.822	39.539	40.201	0.099407					55	23	3	0	0	0	0.0039637	2	8392	8392;8437		82.445	34.696	1	537610			9536	8049	5300	5300	12531;12532	12531					0.019636288749552477
FPRTIPLI	8	Unmodified	_FPRTIPLI_					0	0	0		nc|ENSG00000142173|P12110-2|COL6A2;ENST00000310645.9_1_21:47546143-47549402:+|nuORF	nc|ENSG00000142173|P12110-2|COL6A2	nc|ENSG00000142173|P12110-2|COL6A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.79998779296875	2	478.80002	955.585488	0.48214	0.00023085	-0.045723	-2.1892E-05	0.43641	0.00020895	478.800038311214	64.201	0.6423	64.192	63.881	64.523	-0.0095291					41	23	2	0	0	0	0.22	1	15930	15930		39.957	3.4912	1	533420			9537	12731	5301	5301	12533	12533					0.10591842553537845
FPRVLLQTL	9	Unmodified	_FPRVLLQTL_					0	0	0		ENST00000531756.5_1_11:74862426-74914042:+|nuORF;nc|ENSG00000137491|O94956-2|SLCO2B1;nc|ENSG00000137491|O94956-4|SLCO2B1;nc|ENSG00000137491|O94956-3|SLCO2B1;ENSG00000137491|ENST00000289575|SLCO2B1	ENST00000531756.5_1_11:74862426-74914042:+|nuORF	ENST00000531756.5_1_11:74862426-74914042:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2833251953125	2	543.837134	1085.65972	0.46073	0.00025056	1.5867	0.00086292	2.0474	0.0011135	543.8379614170632	67.505	0.84464	67.505	66.964	67.809	0					57	29	3	0	0	0	0.059216	1	16970	16970		36.506	9.6225	1	409260			9538	4050	5302	5302	12534	12534					0.1203118564505985
FPRVLLQTL	9	Unmodified	_FPRVLLQTL_					0	0	0		ENST00000531756.5_1_11:74862426-74914042:+|nuORF;nc|ENSG00000137491|O94956-2|SLCO2B1;nc|ENSG00000137491|O94956-4|SLCO2B1;nc|ENSG00000137491|O94956-3|SLCO2B1;ENSG00000137491|ENST00000289575|SLCO2B1	ENST00000531756.5_1_11:74862426-74914042:+|nuORF	ENST00000531756.5_1_11:74862426-74914042:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2830810546875	2	543.837134	1085.65972	0.6038	0.00032837	1.5295	0.00083179	2.1333	0.0011602	543.8378165942073	67.408	0.82397	67.486	67.04	67.864	0.078041					55	28	3	0	0	0	0.09064	1	16924	16924		56.177	29.293	1	636110			9539	4050	5302	5302	12535	12535					0.1203118564505985
FPRVNIISV	9	Unmodified	_FPRVNIISV_					0	0	0		nc|ENSG00000144895|Q9BY44-3|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3175048828125	2	522.813659	1043.61277	0.49154	0.00025698	3.064	0.0016019	3.5555	0.0018589	523.3171533688242	62.939	0.65331	63.035	62.736	63.39	0.095722					56	23	4	0	0	0	0.18803	1	15562	15562		25.399	1.6095	1	682530			9540	12740	5303	5303	12536	12536					0.09270326093883341
FPRVYKLL	8	Unmodified	_FPRVYKLL_					0	0	0			REV__ENSG00000108671|ENST00000261712|PSMD11	REV__ENSG00000108671|ENST00000261712|PSMD11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3316040039062	2	518.32112	1034.62769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.633	1	67.711	67.211	68.211	0.078041								0	0	0	0.35014	1	16986	16986		14.582	3.7578	1		+		9541	14605	5304	5304	12537	12537					0.11175817961907342
FPSDLSLR	8	Unmodified	_FPSDLSLR_					0	0	0		ENST00000497403.5_1_2:10101229-10104576:+|nuORF;nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENSG00000134317|ENST00000324907|GRHL1	ENST00000497403.5_1_2:10101229-10104576:+|nuORF	ENST00000497403.5_1_2:10101229-10104576:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2659606933594	2	467.753267	933.491981	0.10431	4.879E-05	-0.54638	-0.00025557	-0.44208	-0.00020678	467.7533013481057	45.161	0.37494	45.161	44.991	45.366	0					16	13	2	0	0	0	0.32886	1	10054	10054		21.747	0.20967	1	153390			9542	3773	5305	5305	12538	12538					0.02257498380436118
FPSFPHDEV	9	Unmodified	_FPSFPHDEV_					0	0	0		TRPS1|p.N1148Dfs*8|1|0.11|ENSG00000104447|chr8:115414400-115414427|CAACAGCTGAAAAATGAGGAGGCAGATT/-|frameshift_variant;nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;TRPS1|p.N1276Kfs*5|1|0.11|ENSG00000104447|chr8:115414041-115414042|-/T|frameshift_variant;ENSG00000104447|ENST00000395715|TRPS1;TRPS1|p.L148Sfs*53|1|0.09|ENSG00000104447|chr8:115619617-115619618|-/AGCT|frameshift_variant	TRPS1|p.N1148Dfs*8|1|0.11|ENSG00000104447|chr8:115414400-115414427|CAACAGCTGAAAAATGAGGAGGCAGATT/-|frameshift_variant	TRPS1|p.N1148Dfs*8|1|0.11|ENSG00000104447|chr8:115414400-115414427|CAACAGCTGAAAAATGAGGAGGCAGATT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.317138671875	2	537.748182	1073.48181	0.64836	0.00034866	2.2887	0.0012308	2.9371	0.0015794	537.7489937773016	37.205	0.438	37.298	37.06	37.498	0.093018					27	15	2	0	0	0	0.24913	1	7671	7671		12.532	0	1	123160			9543	1894	5306	5306	12539	12539					-0.05199109344812314
FPSGIIKVF	9	Unmodified	_FPSGIIKVF_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7794494628906	2	504.299853	1006.58515	0.37988	0.00019157	-2.7525	-0.0013881	-2.3726	-0.0011965	504.7986946600203	68.726	0.64697	68.798	68.536	69.183	0.071938					38	23	3	0	0	0	0.22061	1	17410	17410		18.146	0	1	226470			9544	5280	5307	5307	12540	12540					0.08212422833673827
FPSHVYISL	9	Unmodified	_FPSHVYISL_					0	0	0		ENST00000380007.2_1_5:94956482-94957517:+|nuORF	ENST00000380007.2_1_5:94956482-94957517:+|nuORF	ENST00000380007.2_1_5:94956482-94957517:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.302978515625	2	531.784567	1061.55458	0.36087	0.00019191	-0.053919	-2.8673E-05	0.30695	0.00016323	531.784798000917	66.77	0.58357	66.854	66.572	67.156	0.083832					30	20	2	0	0	0	0.2322	1	16753	16753		20.454	3.3407	1	178730			9545	9978	5308	5308	12541	12541					0.026266444486282126
FPSLELNI	8	Unmodified	_FPSLELNI_					0	0	0		ENSG00000083799|ENST00000427738|CYLD;nc|ENSG00000083799|Q9NQC7-2|CYLD	ENSG00000083799|ENST00000427738|CYLD	ENSG00000083799|ENST00000427738|CYLD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.76568603515625	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.18	1	61.18	60.68	61.68	0								0	0	0	0.17391	1	15012	15012		48.346	6.2513	1				9546	1228	5309	5309	12542	12542					0.032992666659424685
FPSLELNI	8	Unmodified	_FPSLELNI_					0	0	0		ENSG00000083799|ENST00000427738|CYLD;nc|ENSG00000083799|Q9NQC7-2|CYLD	ENSG00000083799|ENST00000427738|CYLD	ENSG00000083799|ENST00000427738|CYLD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.76531982421875	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.1	1	61.197	60.697	61.697	0.096985								0	0	0	0.17391	1	14980	14980		48.346	6.2513	1				9547	1228	5309	5309	12543	12543					0.032992666659424685
FPSLELNIT	9	Unmodified	_FPSLELNIT_					0	0	0		ENSG00000083799|ENST00000427738|CYLD;nc|ENSG00000083799|Q9NQC7-2|CYLD	ENSG00000083799|ENST00000427738|CYLD	ENSG00000083799|ENST00000427738|CYLD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.816162109375	2	517.281857	1032.54916	0.42153	0.00021805	0.69803	0.00036108	1.1196	0.00057913	517.2821233086481	62.673	0.93017	62.673	62.187	63.117	0					49	34	3	0	0	0	0.21389	1	15549	15549		19.257	6.2145	1	289640			9548	1228	5310	5310	12544	12544					0.034189208661246084
FPSLIKNLDP	10	Unmodified	_FPSLIKNLDP_					0	0	0		nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-2|USP34	nc|ENSG00000115464|Q70CQ2-2|USP34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.795654296875	2	572.324057	1142.63356	0.37388	0.00021398	-0.27536	-0.0001576	0.098512	5.6381E-05	572.3238051956932	53.922	0.67927	53.912	53.637	54.316	-0.0096054					29	24	2	0	0	0	0.3144	1	12825	12825		13.042	6.3193	1	289030			9549	2650	5311	5311	12545	12545					0.06794871682882331
FPSLPLLAR	9	Unmodified	_FPSLPLLAR_					0	0	0		ENST00000524856.1_1_11:65381806-65381956:-|nuORF	ENST00000524856.1_1_11:65381806-65381956:-|nuORF	ENST00000524856.1_1_11:65381806-65381956:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2615051269531	2	507.310752	1012.60695	-0.057795	-2.932E-05	2.2554	0.0011442	2.1976	0.0011149	507.31217950166877	61.75	1.3187	61.847	61.507	62.826	0.096985					84	47	4	0	0	0	0.22596	1	15143	15143		15.847	5.7733	1	351780			9550	11528	5312	5312	12546	12546					0.1011522758224146
FPSLSSIPIFL	11	Unmodified	_FPSLSSIPIFL_					0	0	0			REV__ENST00000514651.1_1_6:15524658-15533714:-|nuORF	REV__ENST00000514651.1_1_6:15524658-15533714:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5692443847656	3	407.56903	1219.68526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.489	1	15.489	14.989	15.989	0								0	0	0	0.30959	1	1042	1042		9.7643	0	1		+		9551	21836	5313	5313	12547	12547					0.08420615376803653
FPSLSSIPIFL	11	Unmodified	_FPSLSSIPIFL_					0	0	0			REV__ENST00000514651.1_1_6:15524658-15533714:-|nuORF	REV__ENST00000514651.1_1_6:15524658-15533714:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.56915283203125	3	407.56903	1219.68526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.624	1	15.514	15.014	16.014	-0.10981								0	0	0	0.30959	1	1085	1085		9.7643	0	1		+		9552	21836	5313	5313	12548	12548					0.08420615376803653
FPSLSSIPIFL	11	Unmodified	_FPSLSSIPIFL_					0	0	0			REV__ENST00000514651.1_1_6:15524658-15533714:-|nuORF	REV__ENST00000514651.1_1_6:15524658-15533714:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5691223144531	3	407.56903	1219.68526	-0.22748	-9.2714E-05	-2.2523	-0.00091796	-2.4798	-0.0010107	408.2355133939733	15.469	1.4859	15.405	15.186	16.672	-0.064413					143	50	5	0	0	0	0.35522	1	1074	1074		9.7643	0	1	636260	+		9553	21836	5313	5313	12549	12549					0.08420615376803653
FPSMPSPRL	9	Oxidation (M)	_FPSM(Oxidation (M))PSPRL_		FPSM(1)PSPRL		FPSM(64)PSPRL	0	0	1		ENST00000460667.5_1_10:111985902-112004616:+|nuORF;ENST00000485566.1_1_10:111987858-112005573:+|nuORF;nc|ENSG00000119950|P50539|MXI1;ENSG00000119950|ENST00000332674|MXI1	ENST00000460667.5_1_10:111985902-112004616:+|nuORF	ENST00000460667.5_1_10:111985902-112004616:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3373413085938	2	524.268227	1046.5219	0.48201	0.0002527	0.43325	0.00022714	0.91526	0.00047984	524.2683563907564	43.224	0.92234	43.224	42.871	43.793	0					76	33	3	0	0	0	0.075356	1	9483	9483		63.961	25.987	1	668060			9554	2919	5314	5314	12550	12550		367			0.000501140541246059
FPSMPSPRL	9	Oxidation (M)	_FPSM(Oxidation (M))PSPRL_		FPSM(1)PSPRL		FPSM(64)PSPRL	0	0	1		ENST00000460667.5_1_10:111985902-112004616:+|nuORF;ENST00000485566.1_1_10:111987858-112005573:+|nuORF;nc|ENSG00000119950|P50539|MXI1;ENSG00000119950|ENST00000332674|MXI1	ENST00000460667.5_1_10:111985902-112004616:+|nuORF	ENST00000460667.5_1_10:111985902-112004616:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.33740234375	2	524.268227	1046.5219	0.54375	0.00028507	0.24782	0.00012992	0.79157	0.00041499	524.2683594356539	43.029	0.7411	43.114	42.834	43.575	0.085197					61	26	3	0	0	0	0.075356	1	9448	9448		63.961	20.102	1	815180			9555	2919	5314	5314	12551	12551		367			0.000501140541246059
FPSMPSPRL	9	Oxidation (M)	_FPSM(Oxidation (M))PSPRL_		FPSM(1)PSPRL		FPSM(62)PSPRL	0	0	1		ENST00000460667.5_1_10:111985902-112004616:+|nuORF;ENST00000485566.1_1_10:111987858-112005573:+|nuORF;nc|ENSG00000119950|P50539|MXI1;ENSG00000119950|ENST00000332674|MXI1	ENST00000460667.5_1_10:111985902-112004616:+|nuORF	ENST00000460667.5_1_10:111985902-112004616:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.268798828125	2	524.268227	1046.5219	0.35	0.00018349	0.41569	0.00021793	0.76569	0.00040143	524.2683369599049	43.014	0.81166	43.105	42.717	43.529	0.091362					73	29	3	0	0	0	0.026579	1	9398	9398		61.602	23.628	1	750360			9556	2919	5314	5314	12552	12552		367			0.000501140541246059
FPSPHILQI	9	Unmodified	_FPSPHILQI_					0	0	0		nc|ENSG00000179456|Q99592|ZBTB18;ENSG00000179456|ENST00000358704|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.300537109375	2	526.300384	1050.58622	0.75033	0.0003949	-0.40319	-0.0002122	0.34714	0.0001827	526.3001466075733	64.328	0.92811	64.328	63.826	64.755	0					83	33	3	0	0	0	6.1526E-05	3	15987	15941;15987;16040		147.06	78.978	1	1512000			9557	7126	5315	5315	12553;12554;12555	12554					0.06294637202586273
FPSPHILQI	9	Unmodified	_FPSPHILQI_					0	0	0		nc|ENSG00000179456|Q99592|ZBTB18;ENSG00000179456|ENST00000358704|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3004150390625	2	526.300384	1050.58622	0.60841	0.00032021	-0.73077	-0.0003846	-0.12236	-6.4398E-05	526.3001910792854	64.208	1.0852	64.301	63.737	64.822	0.092888					120	39	4	0	0	0	1.2283E-05	3	15920	15920;15967;16017		155.03	83.892	1	1489700			9558	7126	5315	5315	12556;12557;12558	12556					0.06294637202586273
FPSPHILQI	9	Unmodified	_FPSPHILQI_					0	0	0		nc|ENSG00000179456|Q99592|ZBTB18;ENSG00000179456|ENST00000358704|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.30029296875	2	526.300384	1050.58622	0.7128	0.00037515	-0.37909	-0.00019951	0.33372	0.00017564	526.3001554695813	64.273	1.3576	64.263	63.718	65.076	-0.0095291					113	49	4	0	0	0	5.0285E-07	2	15967	15967;16019		160.52	78.903	1	1404300			9559	7126	5315	5315	12559;12560	12559					0.06294637202586273
FPSPLFNPY	9	Unmodified	_FPSPLFNPY_					0	0	0			REV__ENSG00000196227|ENST00000360816|FAM217B	REV__ENSG00000196227|ENST00000360816|FAM217B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7735595703125	2	541.271293	1080.52803	0.56255	0.00030449	-0.67447	-0.00036507	-0.11192	-6.0579E-05	541.2706941244088	86.633	0.88051	86.718	86.396	87.276	0.084831					95	36	4	0	0	0	0.27532	1	22919	22919		12.532	0.89125	1	1134500	+		9560	18632	5316	5316	12561	12561					-0.009010444427076436
FPSPPAVSI	9	Unmodified	_FPSPPAVSI_					0	0	0		nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-4|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7527770996094	2	457.752736	913.490919	0.095015	4.3494E-05	0.47254	0.00021631	0.56755	0.0002598	457.7527425361609	67.744	0.82136	67.744	67.279	68.101	0					77	28	4	0	0	0	0.027237	1	17041	17041		61.357	20.909	1	594570			9561	4516	5317	5317	12562	12562					0.030712840115256768
FPSPPAVSI	9	Unmodified	_FPSPPAVSI_					0	0	0		nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-4|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7527160644531	2	457.752736	913.490919	0.26073	0.00011935	0.28901	0.00013229	0.54974	0.00025164	457.7526155396281	67.639	0.9553	67.717	67.213	68.169	0.078041					85	33	4	0	0	0	0.015402	2	16988	16988;17043		71.134	18.865	1	648330			9562	4516	5317	5317	12563;12564	12563					0.030712840115256768
FPSPPAVSI	9	Unmodified	_FPSPPAVSI_					0	0	0		nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-4|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7528381347656	2	457.752736	913.490919	0.099919	4.5738E-05	0.40629	0.00018598	0.50621	0.00023172	457.7527470134055	67.755	0.98949	67.739	67.236	68.226	-0.016296					91	34	4	0	0	0	0.0041925	1	17025	17025		92.822	28.586	1	787020			9563	4516	5317	5317	12565	12565					0.030712840115256768
FPSPVSISII	10	Unmodified	_FPSPVSISII_					0	0	0		ENSG00000139648|ENST00000267119|KRT71;CON__Q3SY84	ENSG00000139648|ENST00000267119|KRT71	ENSG00000139648|ENST00000267119|KRT71	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3316040039062	2	530.307875	1058.6012	0.4801	0.0002546	-1.0576	-0.00056083	-0.57745	-0.00030623	530.3068285772282	72.559	1.3941	72.613	72.3	73.694	0.053833					87	50	3	0	0	0	0.27772	1	18746	18746		20.454	1.1966	1	719070		+	9564	233	5318	5318	12566	12566					0.07424084279909948
FPSQFHLL	8	Unmodified	_FPSQFHLL_					0	0	0		ENST00000407973.2_2_22:24951006-24951796:-|nuORF;nc|ENSG00000138867|Q96NT3-3|GUCD1	ENST00000407973.2_2_22:24951006-24951796:-|nuORF	ENST00000407973.2_2_22:24951006-24951796:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.25830078125	2	494.766178	987.517802	0.24289	0.00012017	0.0075033	3.7124E-06	0.25039	0.00012388	494.7657382556823	65.378	0.29789	65.378	65.19	65.488	0					18	10	3	0	0	0	0.30795	1	16268	16268		30.637	5.9627	1	175460			9565	10233	5319	5319	12567	12567					0.023543926227148404
FPSTHFLV	8	Unmodified	_FPSTHFLV_					0	0	0			REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.2529296875	2	474.252903	946.491253	0.51738	0.00024537	-0.60261	-0.00028579	-0.08523	-4.042E-05	474.25268066164773	78.341	1.0722	78.399	77.795	78.867	0.058151					87	39	3	0	0	0	0.39956	1	20283	20283		19.439	0	1	817010	+		9566	21099	5320	5320	12568	12568					0.015867037313682886
FPTAAKMYVT	10	Unmodified	_FPTAAKMYVT_					0	0	0			REV__ENSG00000177853|ENST00000316045|ZNF518A	REV__ENSG00000177853|ENST00000316045|ZNF518A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.2827758789062	2	564.791535	1127.56852	0.20183	0.00011399	2.4722	0.0013963	2.674	0.0015102	565.2940644449467	55.489	0.18684	55.47	55.379	55.565	-0.019081					9	6	2	0	0	0	0.31165	1	13266	13266		15.847	5.0233	1	280330	+		9567	18006	5321	5321	12569	12569					0.009835538853849357
FPTEEEEEV	9	Unmodified	_FPTEEEEEV_					0	0	0		nc|ENSG00000085185|Q5H9F3-1|BCORL1;ENSG00000085185|ENST00000540052|BCORL1	nc|ENSG00000085185|Q5H9F3-1|BCORL1	nc|ENSG00000085185|Q5H9F3-1|BCORL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2847290039062	2	554.737677	1107.4608	-0.41016	-0.00022753	-0.79431	-0.00044063	-1.2045	-0.00066817	555.2389965922113	60.115	0.137	60.21	60.155	60.292	0.095093					7	4	2	0	0	0	0.24913	1	14699	14699		7.9102	0.62092	1	117210			9568	1253	5322	5322	12570	12570					-0.08863164234981014
FPTILELQP	9	Unmodified	_FPTILELQP_					0	0	0			REV__ENST00000574700.5_1_17:5384531-5389490:-|nuORF	REV__ENST00000574700.5_1_17:5384531-5389490:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.8523559570312	2	529.30005	1056.58555	0.50481	0.0002672	-0.23121	-0.00012238	0.2736	0.00014482	529.8016092860977	53.07	0.50944	53.06	52.708	53.218	-0.0096054					26	18	2	0	0	0	0.18943	1	12402	12402		23.148	2.6948	1	156280	+		9569	22432	5323	5323	12571	12571					0.059517977628502194
FPTIVTYPVAI	11	Unmodified	_FPTIVTYPVAI_					0	0	0			REV__ENSG00000279111|ENST00000623167|OR10X1	REV__ENSG00000279111|ENST00000623167|OR10X1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5797119140625	3	407.56903	1219.68526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.833	1	38.926	38.426	39.426	0.09267								0	0	0	0.34476	1	8134	8134		4.7159	0	1		+		9570	19353	5324	5324	12572	12572					0.0842061537682639
FPTKHPILR	9	Unmodified	_FPTKHPILR_					0	0	0		ENST00000303329.8_1_15:80889741-80889825:+|nuORF	ENST00000303329.8_1_15:80889741-80889825:+|nuORF	ENST00000303329.8_1_15:80889741-80889825:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.7530517578125	2	554.834926	1107.6553	0.46766	0.00025947	-3.2212	-0.0017873	-2.7536	-0.0015278	554.8331584186582	85.468	0.23353	85.455	85.35	85.583	-0.01284					9	8	2	0	0	0	0.25526	1	22460	22460		7.9102	2.6795	1	25629			9571	9245	5325	5325	12573	12573					0.1057772122210281
FPTNITCVV	9	Unmodified	_FPTNITCVV_					0	0	0		ENSG00000226372|ENST00000441525|DCAF8L1;ENSG00000189186|ENST00000451261|DCAF8L2	ENSG00000226372|ENST00000441525|DCAF8L1	ENSG00000226372|ENST00000441525|DCAF8L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.77435302734375	2	497.257328	992.500103	0.41301	0.00020537	-3.1032	-0.0015431	-2.6902	-0.0013377	497.25457623757075	29.335	0.6933	29.347	29.053	29.746	0.012266					51	23	4	0	0	0	0.22061	1	5252	5252		24.021	0	1	182710			9572	7807	5326	5326	12574	12574					0.0035530930554159568
FPTRQKWTF	9	Unmodified	_FPTRQKWTF_					0	0	0			REV__ENSG00000181544|ENST00000650831|FANCB	REV__ENSG00000181544|ENST00000650831|FANCB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.19036865234375	3	404.217102	1209.62948	-0.29439	-0.000119	-0.32942	-0.00013316	-0.62381	-0.00025215	404.2171629208129	30.705	0.57839	30.733	30.505	31.084	0.027157					30	20	2	0	0	0	0.25431	1	5627	5627		9.3831	0	1	151360	+		9573	18152	5327	5327	12575	12575					0.033048269798200636
FPVDPRKVLI	10	Unmodified	_FPVDPRKVLI_					0	0	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.7720947265625	2	592.363516	1182.71248	0.67759	0.00040138	-0.52927	-0.00031352	0.14832	8.786E-05	592.363105252374	60.493	0.59179	60.493	60.228	60.819	0					32	21	2	0	0	0	0.26476	1	14784	14784		33.445	15.072	1	655690			9574	3987	5328	5328	12576	12576					0.12843143707846139
FPVDPRKVLI	10	Unmodified	_FPVDPRKVLI_					0	0	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.7722778320312	2	592.363516	1182.71248	0.5323	0.00031532	-0.26041	-0.00015425	0.2719	0.00016106	592.8649590870727	60.417	0.65937	60.512	60.18	60.839	0.095093					33	23	2	0	0	0	0.23997	1	14749	14749		40.239	21.866	1	590910			9575	3987	5328	5328	12577	12577					0.12843143707846139
FPVDPRKVLI	10	Unmodified	_FPVDPRKVLI_					0	0	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.7728271484375	2	592.363516	1182.71248	0.62242	0.0003687	-0.53394	-0.00031629	0.088479	5.2412E-05	592.363049527808	60.523	0.67224	60.514	60.139	60.812	-0.0094566					40	24	2	0	0	0	0.21213	1	14785	14785		47.594	29.221	1	574860			9576	3987	5328	5328	12578	12578					0.12843143707846139
FPVEINKH	8	Unmodified	_FPVEINKH_					0	0	0			REV__ENSG00000122729|ENST00000309951|ACO1	REV__ENSG00000122729|ENST00000309951|ACO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.7956237792969	2	492.269084	982.523616	0.29419	0.00014482	-0.082647	-4.0684E-05	0.21155	0.00010414	492.2691386762473	41.297	0.44001	41.394	41.065	41.505	0.096622					31	15	3	0	0	0	0.33993	1	8885	8885		16.942	6.8684	1	560590	+		9577	15167	5329	5329	12579	12579					0.03165491134382137
FPVFLAFVPAL	11	Unmodified	_FPVFLAFVPAL_					0	0	0			REV__nc|ENSG00000134882|Q8NBM4-3|UBAC2	REV__nc|ENSG00000134882|Q8NBM4-3|UBAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5748291015625	3	407.574116	1219.70052	-0.1587	-6.4682E-05	1.7711	0.00072187	1.6124	0.00065719	407.57472507639056	38.293	0.50472	38.293	37.956	38.46	0					32	17	2	0	0	0	0.36487	1	7977	7977		8.4443	1.3426	1	754790	+		9578	15706	5330	5330	12580	12580					0.09945526964656892
FPVFLAFVPAL	11	Unmodified	_FPVFLAFVPAL_					0	0	0			REV__nc|ENSG00000134882|Q8NBM4-3|UBAC2	REV__nc|ENSG00000134882|Q8NBM4-3|UBAC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.55682373046875	3	407.574116	1219.70052	-0.1587	-6.4682E-05	1.7711	0.00072187	1.6124	0.00065719	407.57472507639056	38.293	0.50472	38.293	37.956	38.46	0					32	17	2	0	0	0	0.3241	1	7927	7927		5.4027	5.4027	1	754790	+		9579	15706	5330	5330	12581	12581					0.09945526964656892
FPVGLSTKF	9	Unmodified	_FPVGLSTKF_					0	0	0			REV__ENST00000284037.9_1_5:65376262-65376403:+|nuORF	REV__ENST00000284037.9_1_5:65376262-65376403:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7897644042969	2	498.28166	994.548768	0.032499	1.6193E-05	0.21548	0.00010737	0.24798	0.00012356	498.2817161200456	61.815	0.69695	61.806	61.553	62.25	-0.0085526					45	24	4	0	0	0	0.21905	1	15240	15240		23.148	5.0134	1	441160	+		9580	19726	5331	5331	12582	12582					0.051275459369549026
FPVLGLVLFG	10	Unmodified	_FPVLGLVLFG_					0	0	0			REV__ENSG00000134760|ENST00000257192|DSG1	REV__ENSG00000134760|ENST00000257192|DSG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.30322265625	2	531.323328	1060.6321	0.46676	0.000248	-1.1649	-0.00061895	-0.69817	-0.00037095	531.3225576609625	67.295	0.31444	67.295	67.135	67.45	0					13	10	2	0	0	0	0.31745	1	16848	16848		7.9102	1.7044	1	94248	+		9581	15698	5332	5332	12583	12583					0.10421282384800179
FPVLNVTRYY	10	Unmodified	_FPVLNVTRYY_					0	0	0		ENSG00000165724|ENST00000298585|ZMYND19	ENSG00000165724|ENST00000298585|ZMYND19	ENSG00000165724|ENST00000298585|ZMYND19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.5589294433594	3	424.564279	1270.67101	0.45174	0.00019179	0.85744	0.00036404	1.3092	0.00055583	424.5647049126108	47.016	0.5329	47.071	46.827	47.36	0.054375					28	18	2	0	0	0	0.35961	1	10577	10577		10.899	0.74838	1	470540			9582	5996	5333	5333	12584	12584					0.04649962948542452
FPVLNVTRYY	10	Unmodified	_FPVLNVTRYY_					0	0	0		ENSG00000165724|ENST00000298585|ZMYND19	ENSG00000165724|ENST00000298585|ZMYND19	ENSG00000165724|ENST00000298585|ZMYND19	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	424.564279	1270.67101	0.26795	0.00011376	0.92907	0.00039445	1.197	0.00050821	424.56481178170924	47.119	0.41966	47.119	46.932	47.352	0	0.024091	6.2721E-05	NaN	10.899	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337930			9583	5996	5333	5333							0.04649962948542452
FPVLVRTSACR	11	Unmodified	_FPVLVRTSACR_					0	0	0		ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	ENSG00000129757|ENST00000440480|CDKN1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.8082885742188	2	624.847707	1247.68086	-0.0067507	-4.2182E-06	0.69281	0.0004329	0.68606	0.00042868	624.8476168998255	62.046	0.33652	62.038	61.757	62.094	-0.0085526					14	11	2	0	0	0	0.32951	1	15263	15263		8.7454	1.4562	1	108570			9584	3440	5334	5334	12585	12585					0.06692827682218194
FPVLYPQPS	9	Unmodified	_FPVLYPQPS_					0	0	0			REV__ENST00000436129.2_1_20:60551226-60583162:-|nuORF	REV__ENST00000436129.2_1_20:60551226-60583162:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2686767578125	2	524.279118	1046.54368	-0.79423	-0.0004164	-0.10763	-5.6427E-05	-0.90185	-0.00047282	524.2788477189091	34.929	1.0122	35.004	34.604	35.617	0.075306					97	36	3	0	0	0	0.12846	1	7095	7095		34.102	5.6156	1	1768400	+		9585	21002	5335	5335	12586	12586					0.022272420743320254
FPVPASRL	8	Unmodified	_FPVPASRL_					0	0	0		ENST00000463734.1_1_20:25204590-25206148:+|nuORF	ENST00000463734.1_1_20:25204590-25206148:+|nuORF	ENST00000463734.1_1_20:25204590-25206148:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.7734069824219	2	443.760895	885.507237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.31	1	58.294	57.794	58.794	-0.016544								0	0	0	0.33276	1	14125	14125		22.453	5.3661	1				9586	10770	5336	5336	12587	12587					0.0599040996827398
FPVVLQQI	8	Unmodified	_FPVVLQQI_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2840881347656	2	472.284203	942.553853	0.43828	0.00020699	-0.44194	-0.00020872	-0.0036653	-1.7311E-06	472.28384392889717	74.57	0.47299	74.57	74.374	74.847	0					23	16	2	0	0	0	0.058048	2	19117	19117;19168		74.396	33.948	1	344840			9587	971	5337	5337	12588;12589	12588					0.0802784979957778
FPVVLQQI	8	Unmodified	_FPVVLQQI_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.76959228515625	2	472.284203	942.553853	0.16183	7.643E-05	-0.23905	-0.0001129	-0.077225	-3.6472E-05	472.28386807458014	74.466	0.35232	74.518	74.379	74.732	0.052361					16	11	2	0	0	0	0.31375	1	19091	19091		26.341	5.4701	1	322560			9588	971	5337	5337	12590	12590					0.0802784979957778
FPVVLQQI	8	Unmodified	_FPVVLQQI_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2838439941406	2	472.284203	942.553853	0.41537	0.00019617	-0.35358	-0.00016699	0.061789	2.9182E-05	472.2838885982144	74.618	0.37053	74.588	74.416	74.787	-0.030655					17	12	2	0	0	0	0.082568	2	19146	19136;19146		63.563	20.595	1	310250			9589	971	5337	5337	12591;12592	12592					0.0802784979957778
FPVYVLPKV	9	Unmodified	_FPVYVLPKV_					0	0	0		ENSG00000128915|ENST00000261520|ICE2;ENST00000558121.5_1_15:60715835-60734771:-|nuORF;ENST00000561328.1_1_15:60734582-60741127:-|nuORF	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2721557617188	2	531.323328	1060.6321	0.33773	0.00017944	-0.72534	-0.00038539	-0.38761	-0.00020594	531.3229058147613	67.269	0.33265	67.347	67.183	67.515	0.078041					13	11	2	0	0	0	0.19839	1	16895	16895		28.487	15.955	1	88171			9590	3399	5338	5338	12593	12593					0.10421282384800179
FPVYVLPKV	9	Unmodified	_FPVYVLPKV_					0	0	0		ENSG00000128915|ENST00000261520|ICE2;ENST00000558121.5_1_15:60715835-60734771:-|nuORF;ENST00000561328.1_1_15:60734582-60741127:-|nuORF	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3032836914062	2	531.323328	1060.6321	0.3116	0.00016556	-1.2547	-0.00066667	-0.94313	-0.00050111	531.3223677813778	67.306	0.23695	67.29	67.086	67.323	-0.016304					10	7	2	0	0	0	0.23783	1	16846	16846		18.135	5.6034	1	70778			9591	3399	5338	5338	12594	12594					0.10421282384800179
FPWLVRIYF	9	Unmodified	_FPWLVRIYF_					0	0	0		ENST00000409892.5_1_2:65315130-65315409:-|nuORF	ENST00000409892.5_1_2:65315130-65315409:-|nuORF	ENST00000409892.5_1_2:65315130-65315409:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.2043151855469	3	414.234093	1239.68045	0.17828	7.385E-05	2.3854	0.0009881	2.5636	0.0010619	414.23505832388673	29.396	0.16894	29.396	29.244	29.413	0					7	5	2	0	0	0	0.25622	1	5237	5237		7.609	0	1	40990			9592	10261	5339	5339	12595	12595					0.07019776024708335
FPWQAKMV	8	Oxidation (M)	_FPWQAKM(Oxidation (M))V_		FPWQAKM(1)V		FPWQAKM(54)V	0	0	1		ENSG00000261701|ENST00000540303|HPR;nc|ENSG00000261701|P00739-2|HPR;nc|ENSG00000257017|P00738-2|HP;ENSG00000257017|ENST00000355906|HP	ENSG00000261701|ENST00000540303|HPR	ENSG00000261701|ENST00000540303|HPR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.74285888671875	2	511.760038	1021.50552	0.24427	0.00012501	0.19847	0.00010157	0.44274	0.00022658	511.7599053393551	47.243	0.58774	47.296	47.038	47.626	0.05257					44	21	3	0	0	0	0.13961	1	10695	10695		53.576	36.463	1	352630			9593	8662	5340	5340	12596	12596		920			-0.004369671119775376
FPWQAKMV	8	Oxidation (M)	_FPWQAKM(Oxidation (M))V_					0	0	1		ENSG00000261701|ENST00000540303|HPR;nc|ENSG00000261701|P00739-2|HPR;nc|ENSG00000257017|P00738-2|HP;ENSG00000257017|ENST00000355906|HP	ENSG00000261701|ENST00000540303|HPR	ENSG00000261701|ENST00000540303|HPR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	511.760038	1021.50552	0.5895	0.00030168	0.92684	0.00047432	1.5163	0.000776	511.759827337204	47.356	0.66086	47.356	47.137	47.797	0	0.04515	0.00082652	NaN	53.576	38	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354790			9594	8662	5340	5340				920			-0.004369671119775376
FPWSEIRNI	9	Unmodified	_FPWSEIRNI_					0	0	0		ENSG00000092820|ENST00000367075|EZR;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;ENSG00000147065|ENST00000360270|MSN;nc|ENSG00000137710|P35241-4|RDX	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3064575195312	2	581.306198	1160.59784	0.25879	0.00015044	0.3558	0.00020683	0.61459	0.00035727	581.3060322291796	67.297	1.1057	67.297	66.6	67.706	0					92	38	3	0	0	0	0.0054984	1	16843	16843		86.332	7.6038	1	1266500			9595	1426	5341	5341	12597	12597					0.023968342258967823
FPWSEIRNI	9	Unmodified	_FPWSEIRNI_					0	0	0		ENSG00000092820|ENST00000367075|EZR;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;ENSG00000147065|ENST00000360270|MSN;nc|ENSG00000137710|P35241-4|RDX	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.3068237304688	2	581.306198	1160.59784	0.25245	0.00014675	0.50088	0.00029117	0.75333	0.00043792	581.3061302814142	67.203	1.0371	67.281	66.566	67.603	0.078041					97	36	4	0	0	0	0.0016712	1	16783	16783		114.2	68.502	1	1157200			9596	1426	5341	5341	12598	12598					0.023968342258967823
FPWSEIRNI	9	Unmodified	_FPWSEIRNI_					0	0	0		ENSG00000092820|ENST00000367075|EZR;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;ENSG00000147065|ENST00000360270|MSN;nc|ENSG00000137710|P35241-4|RDX	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.8087158203125	2	581.306198	1160.59784	0.14768	8.5849E-05	0.66864	0.00038868	0.81632	0.00047453	581.3061676658278	67.327	0.90812	67.31	66.736	67.644	-0.016296					96	31	4	0	0	0	0.0079761	1	16819	16819		82.529	26.352	1	1271500			9597	1426	5341	5341	12599	12599					0.023968342258967823
FPYAFKEV	8	Unmodified	_FPYAFKEV_					0	0	0		ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1;ENST00000493342.1_1_X:24745055-24752029:+|nuORF	ENSG00000101868|ENST00000379068|POLA1	ENSG00000101868|ENST00000379068|POLA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7607727050781	2	500.760561	999.506569	0.71533	0.00035821	-0.49399	-0.00024737	0.22134	0.00011084	500.76026416202785	54.667	0.5435	54.667	54.374	54.917	0					43	19	3	0	0	0	0.11422	1	13013	13013		69.105	18.25	1	725930			9598	1725	5342	5342	12600	12600					0.006795705285639997
FPYAFKEV	8	Unmodified	_FPYAFKEV_					0	0	0		ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1;ENST00000493342.1_1_X:24745055-24752029:+|nuORF	ENSG00000101868|ENST00000379068|POLA1	ENSG00000101868|ENST00000379068|POLA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.3055419921875	2	500.760561	999.506569	0.63685	0.00031891	-0.53227	-0.00026654	0.10458	5.237E-05	500.76025286947015	54.612	0.48074	54.675	54.41	54.89	0.063206					47	17	4	0	0	0	0.16891	1	12957	12957		69.105	27.01	1	763350			9599	1725	5342	5342	12601	12601					0.006795705285639997
FPYAFKEV	8	Unmodified	_FPYAFKEV_					0	0	0		ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1;ENST00000493342.1_1_X:24745055-24752029:+|nuORF	ENSG00000101868|ENST00000379068|POLA1	ENSG00000101868|ENST00000379068|POLA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.76068115234375	2	500.760561	999.506569	0.71275	0.00035692	-0.47432	-0.00023752	0.23843	0.0001194	500.7602436624823	54.902	0.39697	54.886	54.631	55.028	-0.015923					36	14	3	0	0	0	0.11422	1	13063	13063		69.105	18.25	1	679030			9600	1725	5342	5342	12602	12602					0.006795705285639997
FPYAQRQFL	9	Unmodified	_FPYAQRQFL_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.8406372070312	2	585.308741	1168.60293	0.42366	0.00024797	0.52261	0.00030589	0.94627	0.00055386	585.309021985264	55.154	0.76667	55.154	54.891	55.658	0					47	27	2	0	0	0	0.1854	1	13138	13138		25.399	10.818	1	634180			9601	2962	5343	5343	12603	12603					0.025371380885189865
FPYAQRQFL	9	Unmodified	_FPYAQRQFL_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8102416992188	2	585.308741	1168.60293	0.43392	0.00025398	0.39875	0.00023339	0.83267	0.00048737	585.3089503773939	55.354	0.77372	55.335	55.025	55.798	-0.019081					51	28	2	0	0	0	0.019896	1	13171	13171		64.236	36.063	1	579180			9602	2962	5343	5343	12604	12604					0.025371380885189865
FPYAQRQFL	9	Unmodified	_FPYAQRQFL_					0	0	0		ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	ENSG00000120725|ENST00000394817|SIL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	585.308741	1168.60293	0.50679	0.00029663	0.48368	0.0002831	0.99047	0.00057973	585.3089964211209	55.1	0.82917	55.171	54.898	55.727	0.070885	-0.049071	-3.0016E-06	NaN	64.236	51	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	673970			9603	2962	5343	5343							0.025371380885189865
FPYDANIQI	9	Unmodified	_FPYDANIQI_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.771728515625	2	540.771657	1079.52876	0.55221	0.00029862	-0.33962	-0.00018366	0.21259	0.00011496	540.7713434661669	72.006	2.6395	72.006	71.098	73.738	0					253	95	4	0	0	0	0.00033443	8	18393	18196;18223;18266;18310;18352;18393;18442;18491		131.27	131.27	1	5449200			9604	3405	5344	5344	12605;12606;12607;12608;12609;12610;12611;12612	12610					-0.007822497936786021
FPYDANIQI	9	Unmodified	_FPYDANIQI_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7720336914062	2	540.771657	1079.52876	0.59766	0.0003232	-0.2775	-0.00015006	0.32016	0.00017314	540.7714693851325	71.912	2.417	71.969	71.513	73.93	0.056572					261	87	5	0	0	0	0.0013036	7	18248	18204;18248;18297;18348;18395;18477;18648		118.89	118.89	1	5657400			9605	3405	5344	5344	12613;12614;12615;12616;12617;12618;12619	12614					-0.007822497936786021
FPYDANIQI	9	Unmodified	_FPYDANIQI_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7719116210938	2	540.771657	1079.52876	0.64769	0.00035025	-0.31779	-0.00017185	0.3299	0.0001784	540.7714279939622	72.036	2.2949	72.009	71.477	73.772	-0.027275					251	82	5	0	0	0	0.0013036	6	18317	18226;18268;18317;18359;18402;18444		118.89	118.89	1	6116100			9606	3405	5344	5344	12620;12621;12622;12623;12624;12625	12622					-0.007822497936786021
FPYEASTPTGI	11	Unmodified	_FPYEASTPTGI_					0	0	0		ENSG00000120802|ENST00000556029|TMPO;nc|ENSG00000120802|P42167-2|TMPO	ENSG00000120802|ENST00000556029|TMPO	ENSG00000120802|ENST00000556029|TMPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.7872314453125	2	591.787504	1181.56045	0.46642	0.00027602	-0.46605	-0.00027581	0.00036322	2.1495E-07	591.7872297878558	62.641	1.2025	62.641	62.24	63.443	0					119	44	4	0	0	0	0.00053073	1	15541	15541		103.42	72.716	1	757420			9607	2966	5345	5345	12626	12626					-0.023063018303901117
FPYEASTPTGI	11	Unmodified	_FPYEASTPTGI_					0	0	0		ENSG00000120802|ENST00000556029|TMPO;nc|ENSG00000120802|P42167-2|TMPO	ENSG00000120802|ENST00000556029|TMPO	ENSG00000120802|ENST00000556029|TMPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.7872924804688	2	591.787504	1181.56045	0.47862	0.00028324	-0.4114	-0.00024346	0.067218	3.9779E-05	591.7871562527315	62.528	0.97865	62.625	62.279	63.257	0.096985					92	35	3	0	0	0	0.00531	1	15538	15538		79.596	59.97	1	728270			9608	2966	5345	5345	12627	12627					-0.023063018303901117
FPYEASTPTGI	11	Unmodified	_FPYEASTPTGI_					0	0	0		ENSG00000120802|ENST00000556029|TMPO;nc|ENSG00000120802|P42167-2|TMPO	ENSG00000120802|ENST00000556029|TMPO	ENSG00000120802|ENST00000556029|TMPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.7869873046875	2	591.787504	1181.56045	0.39551	0.00023406	-0.2806	-0.00016606	0.1149	6.7999E-05	591.7872227256306	62.668	1.0784	62.66	62.219	63.297	-0.0085526					115	39	4	0	0	0	0.00079344	2	15511	15420;15511		99.755	69.052	1	762220			9609	2966	5345	5345	12628;12629	12629					-0.023063018303901117
FPYGSFPYV	9	Unmodified	_FPYGSFPYV_					0	0	0		ENSG00000171103|ENST00000306108|TRMT61B	ENSG00000171103|ENST00000306108|TRMT61B	ENSG00000171103|ENST00000306108|TRMT61B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8648071289062	2	538.758018	1075.50148	0.45747	0.00024647	1.0713	0.00057718	1.5288	0.00082365	538.7583915421592	80.815	1.4078	80.815	80.15	81.558	0					86	61	2	0	0	0	0.25066	1	20968	20968		11.64	0.81637	1	198930			9610	6511	5346	5346	12630	12630					-0.03324733334056873
FPYKIPAV	8	Unmodified	_FPYKIPAV_					0	0	0		ENST00000481915.5_1_3:32574447-32611850:-|nuORF;ENSG00000144635|ENST00000273130|DYNC1LI1	ENST00000481915.5_1_3:32574447-32611850:-|nuORF	ENST00000481915.5_1_3:32574447-32611850:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.77337646484375	2	467.773471	933.53239	0.11689	5.468E-05	-0.21566	-0.00010088	-0.098761	-4.6198E-05	467.7733156584893	58.637	1.0373	58.637	57.986	59.024	0					66	35	3	0	0	0	0.065797	2	14259	14207;14259		70.716	34.249	1	572940			9611	4599	5347	5347	12631;12632	12632					0.06296464770844068
FPYKIPAV	8	Unmodified	_FPYKIPAV_					0	0	0		ENST00000481915.5_1_3:32574447-32611850:-|nuORF;ENSG00000144635|ENST00000273130|DYNC1LI1	ENST00000481915.5_1_3:32574447-32611850:-|nuORF	ENST00000481915.5_1_3:32574447-32611850:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2634582519531	2	467.773471	933.53239	0.124	5.8002E-05	-0.33655	-0.00015743	-0.21255	-9.9425E-05	467.77319961507123	58.46	0.92513	58.551	58.003	58.928	0.091305					67	32	3	0	0	0	0.13961	2	14125	14125;14198		53.576	28.902	1	500740			9612	4599	5347	5347	12633;12634	12633					0.06296464770844068
FPYKIPAV	8	Unmodified	_FPYKIPAV_					0	0	0		ENST00000481915.5_1_3:32574447-32611850:-|nuORF;ENSG00000144635|ENST00000273130|DYNC1LI1	ENST00000481915.5_1_3:32574447-32611850:-|nuORF	ENST00000481915.5_1_3:32574447-32611850:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7735900878906	2	467.773471	933.53239	0.45154	0.00021122	-0.55878	-0.00026138	-0.10723	-5.0161E-05	467.7730412679398	58.691	0.86356	58.677	58.221	59.084	-0.014267					57	30	4	0	0	0	0.042326	1	14236	14236		81.864	53.691	1	591190			9613	4599	5347	5347	12635	12635					0.06296464770844068
FPYMTHPSV	9	Oxidation (M)	_FPYM(Oxidation (M))THPSV_		FPYM(1)THPSV		FPYM(100)THPSV	0	0	1		ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;nc|ENSG00000204842|Q99700-5|ATXN2;ENST00000484991.1_1_12:111890618-111891658:-|nuORF	ENSG00000204842|ENST00000673436|ATXN2	ENSG00000204842|ENST00000673436|ATXN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7528686523438	2	547.75241	1093.49027	0.31888	0.00017467	0.021808	1.1945E-05	0.34069	0.00018661	547.7523397963535	41.505	0.35226	41.505	41.225	41.578	0					21	12	2	0	0	0	0.00268	1	8941	8941		104.8	70.697	1	759290			9614	8257	5348	5348	12636	12636		893			-0.052738786998588694
FPYMTHPSV	9	Oxidation (M)	_FPYM(Oxidation (M))THPSV_					0	0	1		ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;nc|ENSG00000204842|Q99700-5|ATXN2;ENST00000484991.1_1_12:111890618-111891658:-|nuORF	ENSG00000204842|ENST00000673436|ATXN2	ENSG00000204842|ENST00000673436|ATXN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	547.75241	1093.49027	0.41875	0.00022937	0.021474	1.1762E-05	0.44022	0.00024113	547.7523234328272	41.315	0.48096	41.405	41.106	41.587	0.090252	-0.049833	-8.7329E-08	NaN	104.8	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	637070			9615	8257	5348	5348				893			-0.052738786998588694
FPYPLRDV	8	Unmodified	_FPYPLRDV_					0	0	0		NOTCH3|p.E1812Rfs*13|1|0.35|ENSG00000074181|chr19:15166020-15166020|C/-|frameshift_variant;ENSG00000074181|ENST00000263388|NOTCH3	NOTCH3|p.E1812Rfs*13|1|0.35|ENSG00000074181|chr19:15166020-15166020|C/-|frameshift_variant	NOTCH3|p.E1812Rfs*13|1|0.35|ENSG00000074181|chr19:15166020-15166020|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.3070068359375	2	503.77146	1005.52837	0.69003	0.00034762	0.091497	4.6094E-05	0.78152	0.00039371	503.7715558042193	56.896	0.93041	56.877	56.456	57.386	-0.019077					49	33	2	0	0	0	0.28969	1	13667	13667		36.044	9.1605	1	324490			9616	1014	5349	5349	12637	12637					0.025823752771316322
FPYPTQAEL	9	Unmodified	_FPYPTQAEL_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.266357421875	2	533.266207	1064.51786	0.26953	0.00014373	0.062364	3.3256E-05	0.33189	0.00017699	533.2661944581571	65.215	0.8812	65.215	64.858	65.739	0					83	31	3	0	0	0	0.042824	1	16225	16225		75.761	30.061	1	1189900			9617	7076	5350	5350	12638	12638					-0.01181652167952052
FPYPTQAEL	9	Unmodified	_FPYPTQAEL_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3081665039062	2	533.266207	1064.51786	0.021086	1.1244E-05	0.47249	0.00025196	0.49358	0.00026321	533.2663440896163	65.076	0.83306	65.165	64.844	65.677	0.088882					77	30	3	0	0	0	0.035405	1	16228	16228		79.596	41.421	1	1117900			9618	7076	5350	5350	12639	12639					-0.01181652167952052
FPYPTQAEL	9	Unmodified	_FPYPTQAEL_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3082275390625	2	533.266207	1064.51786	0.22015	0.0001174	0.21437	0.00011432	0.43453	0.00023172	533.2662107312811	65.221	0.91469	65.209	64.86	65.774	-0.011337					83	33	3	0	0	0	0.042824	1	16267	16267		75.761	30.061	1	1343500			9619	7076	5350	5350	12640	12640					-0.01181652167952052
FPYVTMDI	8	Oxidation (M)	_FPYVTM(Oxidation (M))DI_		FPYVTM(1)DI		FPYVTM(140)DI	0	0	1		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.236328125	2	501.236061	1000.45757	0.53388	0.0002676	-0.094621	-4.7428E-05	0.43926	0.00022017	501.23601993321824	66.254	2.0393	66.254	65.871	67.911	0					161	71	4	0	0	0	0.0016215	4	16573	16527;16573;16621;16669		136.08	82.505	1	10552000			9620	535	5351	5351	12641;12642;12643;12644	12642		60			-0.042640858226945966
FPYVTMDI	8	Oxidation (M)	_FPYVTM(Oxidation (M))DI_		FPYVTM(1)DI		FPYVTM(120)DI	0	0	1		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.236328125	2	501.236061	1000.45757	0.5171	0.00025919	-0.12314	-6.1723E-05	0.39396	0.00019746	501.2360105954123	66.116	2.1525	66.2	65.779	67.931	0.083832					184	76	5	0	0	0	0.0083969	5	16526	16475;16526;16576;16619;16673		120.86	73.936	1	11126000			9621	535	5351	5351	12645;12646;12647;12648;12649	12646		60			-0.042640858226945966
FPYVTMDI	8	Oxidation (M)	_FPYVTM(Oxidation (M))DI_		FPYVTM(1)DI		FPYVTM(120)DI	0	0	1		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.23626708984375	2	501.236061	1000.45757	0.36195	0.00018142	0.038307	1.9201E-05	0.40026	0.00020062	501.2360867721473	66.225	2.2636	66.211	65.89	68.153	-0.013596					186	80	5	0	0	0	0.0083969	5	16553	16507;16553;16602;16652;16701		120.86	67.281	1	11743000			9622	535	5351	5351	12650;12651;12652;12653;12654	12651		60			-0.042640858226945966
FPYYGKKLHV	10	Unmodified	_FPYYGKKLHV_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.90087890625	3	417.901003	1250.68118	-0.030976	-1.2945E-05	-0.464	-0.00019391	-0.49498	-0.00020685	417.9007346834188	38.113	1.2568	38.113	37.646	38.903	0					110	44	4	0	0	0	0.26049	1	7875	7875		35.612	20.364	1	1491500			9623	911	5352	5352	12655	12655					0.06586570673744063
FPYYGKKLHV	10	Unmodified	_FPYYGKKLHV_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.9009704589844	3	417.901003	1250.68118	0.2201	9.198E-05	-0.58903	-0.00024615	-0.36893	-0.00015417	417.90066613139294	37.979	1.3592	38.07	37.527	38.887	0.090881					133	49	5	0	0	0	0.29608	1	7843	7843		24.882	16.936	1	1468200			9624	911	5352	5352	12656	12656					0.06586570673744063
FPYYGKKLHV	10	Unmodified	_FPYYGKKLHV_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.9009094238281	3	417.901003	1250.68118	0.10727	4.483E-05	-0.53592	-0.00022396	-0.42865	-0.00017913	417.90067268237595	37.948	1.0723	38.046	37.578	38.65	0.097527					117	38	4	0	0	0	0.31094	1	7831	7831		19.626	8.8264	1	1460500			9625	911	5352	5352	12657	12657					0.06586570673744063
FPYYPSPGV	9	Unmodified	_FPYYPSPGV_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7504272460938	2	513.750193	1025.48583	0.22508	0.00011564	-0.21843	-0.00011222	0.0066501	3.4165E-06	513.7503474967604	64.894	1.9128	64.894	64.212	66.124	0					217	69	6	0	0	0	0.0030686	2	16178	16178;16235		101.72	71.881	1	3721500			9626	3322	5353	5353	12658;12659	12658					-0.025890198510978735
FPYYPSPGV	9	Unmodified	_FPYYPSPGV_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7505493164062	2	513.750193	1025.48583	0.18788	9.6525E-05	-0.21123	-0.00010852	-0.023348	-1.1995E-05	513.750389348219	64.801	1.7988	64.894	64.26	66.059	0.09288					212	66	6	0	0	0	0.0016131	1	16143	16143		114.94	78.438	1	3516200			9627	3322	5353	5353	12660	12660					-0.025890198510978735
FPYYPSPGV	9	Unmodified	_FPYYPSPGV_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.75048828125	2	513.750193	1025.48583	0.062345	3.203E-05	-0.3978	-0.00020437	-0.33546	-0.00017234	513.7504520803917	64.897	1.7726	64.885	64.229	66.002	-0.01133					180	64	5	0	0	0	0.0030686	2	16173	16173;16217		101.72	65.216	1	3540500			9628	3322	5353	5353	12661;12662	12661					-0.025890198510978735
FQARPLSTL	9	Unmodified	_FQARPLSTL_					0	0	0		nc|ENSG00000204536|Q8TD31|CCHCR1;ENSG00000204536|ENST00000396268|CCHCR1;ENST00000475684.2_1_6:31124506-31125946:-|nuORF;ENST00000509552.5_1_6:31112443-31124902:-|nuORF	nc|ENSG00000204536|Q8TD31|CCHCR1	nc|ENSG00000204536|Q8TD31|CCHCR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7720336914062	2	516.795466	1031.57638	0.12337	6.3754E-05	-1.8042	-0.00093242	-1.6809	-0.00086867	516.7939812747144	31.423	0.19345	31.423	31.309	31.502	0					9	6	2	0	0	0	0.24311	1	5868	5868		11.64	0	1	86143			9629	8236	5354	5354	12663	12663					0.06185449197187154
FQATGAQLPI	10	Unmodified	_FQATGAQLPI_					0	0	0			REV__nc|ENSG00000110422|Q9H422-2|HIPK3	REV__nc|ENSG00000110422|Q9H422-2|HIPK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.8034057617188	2	523.287474	1044.5604	0.11861	6.2067E-05	-0.034844	-1.8234E-05	0.083766	4.3834E-05	523.7899303609147	24.865	1.1684	24.833	24.545	25.713	-0.031408					73	40	3	0	0	0	0.3258	1	4016	4016		17.113	3.2068	1	151030	+		9630	14668	5355	5355	12664	12664					0.03989742960266085
FQDKFTLPIT	10	Unmodified	_FQDKFTLPIT_					0	0	0			REV__ENSG00000115616|ENST00000233969|SLC9A2	REV__ENSG00000115616|ENST00000233969|SLC9A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.768798828125	2	605.329339	1208.64412	0.20676	0.00012516	0.33866	0.000205	0.54542	0.00033016	605.3293516327584	57.3	0.40809	57.283	57.035	57.443	-0.0172					19	14	2	0	0	0	0.31039	1	13749	13749		18.146	8.0724	1	128900	+		9631	14888	5356	5356	12665	12665					0.04814854337337238
FQEHRVGRWVT	11	Unmodified	_FQEHRVGRWVT_					0	0	0		ENSG00000166166|ENST00000389749|TRMT61A	ENSG00000166166|ENST00000389749|TRMT61A	ENSG00000166166|ENST00000389749|TRMT61A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.291748046875	3	472.249465	1413.72657	0.29505	0.00013934	-0.63651	-0.00030059	-0.34146	-0.00016126	472.2491890237492	29.391	0.51695	29.391	29.169	29.686	0					25	18	2	0	0	0	0.33263	1	5259	5259		3.8459	0.77364	1	60777			9632	6038	5357	5357	12666	12666					0.036251891888241516
FQFCEESHW	9	Unmodified	_FQFCEESHW_					0	0	0		chr2:169259217-169268127|138|10.35|0.1|6.72|-|0|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|24;chr11:103391535-103399663|312|10.06|0.06|7.28|+|1|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|16	chr2:169259217-169268127|138|10.35|0.1|6.72|-|0|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|24	chr2:169259217-169268127|138|10.35|0.1|6.72|-|0|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.3400268554688	2	606.742573	1211.47059	0.83516	0.00050673	0.013284	8.0597E-06	0.84845	0.00051479	606.7426676536833	74.629	0.46641	74.629	74.405	74.871	0					24	16	2	0	0	0	0.25938	1	19079	19079		4.3292	0.73274	1	236180			9633	122	5358	5358	12667	12667					-0.1266825471059292
FQGIKRATE	9	Unmodified	_FQGIKRATE_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3031616210938	2	525.290548	1048.56654	0.66409	0.00034884	0.93664	0.00049201	1.6007	0.00084085	525.2909146894704	26.756	0.73571	26.745	26.222	26.958	-0.01156					34	25	2	0	0	0	0.28128	1	4440	4440		11.64	0	1	124600			9634	8020	5359	5359	12668	12668					0.04420261191808095
FQIPTGPAIL	10	Unmodified	_FQIPTGPAIL_					0	0	0			REV__ENST00000547809.5_1_12:105570964-105626916:-|nuORF	REV__ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8068237304688	2	528.808042	1055.60153	0.47829	0.00025292	-0.77615	-0.00041043	-0.29786	-0.00015751	528.8076009981736	81.416	0.40389	81.416	81.204	81.608	0					40	17	3	0	0	0	0.045157	2	21190	21169;21190		60.074	2.3519	1	332010	+		9635	15783	5360	5360	12669;12670	12670					0.07595503999755238
FQIPTGPAIL	10	Unmodified	_FQIPTGPAIL_					0	0	0			REV__ENST00000547809.5_1_12:105570964-105626916:-|nuORF	REV__ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8084106445312	2	528.808042	1055.60153	0.11223	5.935E-05	-0.46302	-0.00024485	-0.35079	-0.0001855	528.8077888546846	81.377	0.4111	81.446	81.213	81.624	0.068993					50	21	3	0	0	0	0.022405	2	21144	21144;21178		69.105	2.6482	1	342670	+		9636	15783	5360	5360	12671;12672	12671					0.07595503999755238
FQIPTGPAIL	10	Unmodified	_FQIPTGPAIL_					0	0	0			REV__ENST00000547809.5_1_12:105570964-105626916:-|nuORF	REV__ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.80859375	2	528.808042	1055.60153	0.49619	0.00026239	1.4317	0.00075707	1.9279	0.0010195	528.8080152599468	81.489	0.74678	81.465	80.89	81.637	-0.02404					56	33	3	0	0	0	0.045157	2	21236	21209;21236		60.074	2.3519	1	373040	+		9637	15783	5360	5360	12673;12674	12674					0.07595503999755238
FQIQFLKF	8	Unmodified	_FQIQFLKF_					0	0	0			REV__ENST00000524681.1_1_11:65647325-65647915:+|nuORF	REV__ENST00000524681.1_1_11:65647325-65647915:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7976684570312	2	535.805303	1069.59605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.244	1	41.341	40.841	41.841	0.096626								0	0	0	0.32762	1	8864	8864		24.674	6.5389	1		+		9638	17722	5361	5361	12675	12675					0.06403825207939917
FQKAFKYI	8	Unmodified	_FQKAFKYI_					0	0	0		nc|ENSG00000290584|Q9P1P4|TAAR3P	nc|ENSG00000290584|Q9P1P4|TAAR3P	nc|ENSG00000290584|Q9P1P4|TAAR3P	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8112182617188	2	522.797478	1043.5804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.434	1	12.434	11.934	12.934	0								0	0	0	0.37724	1	125	125		2.3027	0	1				9639	13009	5362	5362	12676	12676					0.060355386908895525
FQKAMGNPCEF	11	Unmodified	_FQKAMGNPCEF_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.2806396484375	2	636.281008	1270.54746	0.25992	0.00016538	-0.6292	-0.00040035	-0.36927	-0.00023496	636.2807757417683	12.367	0.17798	12.27	12.206	12.384	-0.096607					8	5	2	0	0	0	0.47742	1	118	118		1.0715	0.5467	1	28634			9640	2124	5363	5363	12677	12677					-0.07698779485758678
FQKLLNNLT	9	Unmodified	_FQKLLNNLT_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.C916Vfs*123|1|0.4|ENSG00000135862|chr1:183125494-183125494|C/-|frameshift_variant	ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.C916Vfs*123|1|0.4|ENSG00000135862|chr1:183125494-183125494|C/-|frameshift_variant	LAMC1|p.C916Vfs*123|1|0.4|ENSG00000135862|chr1:183125494-183125494|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.27587890625	2	545.816399	1089.61824	0.54407	0.00029696	1.8567	0.0010134	2.4008	0.0013104	545.817555761389	67.088	1.0976	67.166	66.704	67.802	0.078041					53	38	2	0	0	0	0.22061	1	16715	16715		18.146	0.011366	1	483870			9641	3913;12501	5364	5364	12678	12678					0.07702004885709357
FQLHYQDLL	9	Unmodified	_FQLHYQDLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.322998046875	2	588.806031	1175.59751	0.49914	0.0002939	-0.19355	-0.00011397	0.30559	0.00017993	588.8057301957449	58.777	0.99237	58.762	58.523	59.515	-0.014267					103	34	4	0	0	0	0.17787	1	14411	14411		26.884	5.3467	1	5355900			9642	7415	5365	5365	12679	12679					0.01673414506035442
FQNPFRSEL	9	Unmodified	_FQNPFRSEL_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.794189453125	2	569.288005	1136.56146	0.35928	0.00020453	-0.95194	-0.00054193	-0.59266	-0.00033739	569.2875892131301	57.367	0.47479	57.367	57.19	57.665	0					27	16	2	0	0	0	0.19686	1	13802	13802		31.268	12.011	1	780360			9643	995	5366	5366	12680	12680					-0.0013604267080609134
FQNPFRSEL	9	Unmodified	_FQNPFRSEL_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.794189453125	2	569.288005	1136.56146	0.38191	0.00021741	-0.70996	-0.00040417	-0.32805	-0.00018676	569.2877862186617	57.188	0.44201	57.266	57.149	57.591	0.078674					23	15	2	0	0	0	0.16853	1	13782	13782		38.176	7.539	1	908890			9644	995	5366	5366	12681	12681					-0.0013604267080609134
FQNPFRSEL	9	Unmodified	_FQNPFRSEL_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.2863159179688	2	569.288005	1136.56146	0.11821	6.7298E-05	-1.4855	-0.00084566	-1.3673	-0.00077836	569.286913182648	57.608	0.6431	57.591	57.31	57.953	-0.0172					38	23	2	0	0	0	0.0048951	1	13919	13919		87.258	43.4	1	1412500			9645	995	5366	5366	12682	12682					-0.0013604267080609134
FQPEMAEEF	9	Unmodified	_FQPEMAEEF_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.7583618164062	2	564.239332	1126.46411	0.51603	0.00029117	0.205	0.00011567	0.72103	0.00040683	564.2393437103798	63.897	0.51416	63.99	63.794	64.309	0.09288					32	18	2	0	0	0	0.25314	1	15852	15852		15.847	2.3393	1	220340			9646	5932	5367	5367	12683	12683					-0.0940619266198155
FQPKYLKRK	9	Unmodified	_FQPKYLKRK_					0	0	0		ENST00000342992.10_3_2:179559630-179560597:-|nuORF	ENST00000342992.10_3_2:179559630-179560597:-|nuORF	ENST00000342992.10_3_2:179559630-179560597:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.594482421875	3	403.248514	1206.72371	-0.44743	-0.00018042	-2.9821	-0.0012025	-3.4296	-0.001383	403.24710054950145	12.484	0.1845	12.484	12.397	12.582	0					12	5	3	0	0	0	0.34243	1	154	154		2.4985	0.21571	1	44467			9647	9538	5368	5368	12684	12684					0.12861965801971564
FQPRPLRLPK	10	Unmodified	_FQPRPLRLPK_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.3890991210938	2	626.387857	1250.76116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.68	1	111.69	111.19	112.19	0.0131								0	0	0	0.38126	1	29071	29071		1.6526	0.32309	1				9648	8424	5369	5369	12685	12685					0.1458105706758488
FQQLRHRI	8	Unmodified	_FQQLRHRI_					0	0	0		nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.8411254882812	2	549.319974	1096.6254	0.28258	0.00015523	0.62801	0.00034498	0.9106	0.00050021	549.3197887666955	17.294	0.47597	17.177	16.965	17.441	-0.11739					28	16	3	0	0	0	0.34353	1	1584	1584		4.756	0.42677	1	44466			9649	2528	5370	5370	12686	12686					0.08094782276816659
FQQLRHRI	8	Unmodified	_FQQLRHRI_					0	0	0		nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	nc|ENSG00000113734|Q12981-2|BNIP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	549.319974	1096.6254	0.38045	0.00020899	0.44869	0.00024647	0.82913	0.00045546	549.3198504453065	17.066	0.37125	17.066	16.925	17.296	0	-0.055769	-8.3849E-05	NaN	4.756	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40265			9650	2528	5370	5370							0.08094782276816659
FQRELLTDHRV	11	Unmodified	_FQRELLTDHRV_					0	0	0		nc|ENSG00000167705|Q96NA2-2|RILP;ENST00000570858.5_1_17:1549738-1551855:-|nuORF;ENSG00000167705|ENST00000301336|RILP	nc|ENSG00000167705|Q96NA2-2|RILP	nc|ENSG00000167705|Q96NA2-2|RILP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.9248962402344	3	471.924759	1412.75245	0.23627	0.0001115	-0.10279	-4.851E-05	0.13348	6.2991E-05	471.9246690843994	37.867	0.84275	37.867	37.477	38.32	0					76	29	4	0	0	0	0.45422	1	7835	7835		4.1166	1.4854	1	1186800			9651	6203	5371	5371	12687	12687					0.06258038640453378
FQSFTSDKLTV	11	Unmodified	_FQSFTSDKLTV_					0	0	0			REV__ENSG00000074657|ENST00000591808|ZNF532	REV__ENSG00000074657|ENST00000591808|ZNF532	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8873596191406	3	424.887199	1271.63977	0.081961	3.4824E-05	-0.032577	-1.3842E-05	0.049384	2.0983E-05	424.8873499862606	30.029	1.5142	30.029	28.845	30.359	0					169	54	5	0	0	0	0.36943	1	5494	5494		8.7518	0	1	1340200	+		9652	13792	5372	5372	12688	12688					0.014813451237614572
FQSTFLLFP	9	Unmodified	_FQSTFLLFP_					0	0	0		ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENST00000563623.5_1_16:2339371-2378589:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7828979492188	2	550.294768	1098.57498	0.55575	0.00030583	-1.9306	-0.0010624	-1.3748	-0.00075655	550.2938024137994	48.497	0.30444	48.497	48.331	48.636	0					16	10	2	0	0	0	0.23783	1	11114	11114		18.135	10.225	1	246400			9653	11932	5373	5373	12689	12689					0.029638151084327546
FQSTFLLFP	9	Unmodified	_FQSTFLLFP_					0	0	0		ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENST00000563623.5_1_16:2339371-2378589:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7828979492188	2	550.294768	1098.57498	0.63968	0.00035201	-2.0094	-0.0011057	-1.3697	-0.00075373	550.2931485228095	48.449	0.31723	48.492	48.243	48.56	0.043324					17	11	2	0	0	0	0.22596	1	11077	11077		21.747	7.8406	1	209640			9654	11932	5373	5373	12690	12690					0.029638151084327546
FQTQTPPQSL	10	Unmodified	_FQTQTPPQSL_					0	0	0		nc|ENSG00000174574|Q9H9L7-2|AKIRIN1;ENSG00000174574|ENST00000432648|AKIRIN1	nc|ENSG00000174574|Q9H9L7-2|AKIRIN1	nc|ENSG00000174574|Q9H9L7-2|AKIRIN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.7924194335938	2	573.793121	1145.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.863	1	20.863	20.363	21.363	0								0	0	0	0.37869	1	2667	2667		2.7352	0.89096	1				9655	6803	5374	5374	12691	12691					0.0047252026377009315
FQVTYLNI	8	Unmodified	_FQVTYLNI_					0	0	0		ENST00000604822.1_1_4:153268030-153273825:-|nuORF	ENST00000604822.1_1_4:153268030-153273825:-|nuORF	ENST00000604822.1_1_4:153268030-153273825:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2709045410156	2	499.271293	996.528032	0.44606	0.0002227	-0.33209	-0.0001658	0.11397	5.69E-05	499.27104511140726	87.684	0.55318	87.679	87.46	88.013	-0.0056229					74	30	3	0	0	0	0.42642	1	23184	23184		13.906	0	1	590820			9656	12282	5375	5375	12692	12692					0.029629555572796562
FQVYLEPQS	9	Unmodified	_FQVYLEPQS_					0	0	0		chrX:70610543-70613253|397|28.71|0.16|7.46|-|2|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|41	chrX:70610543-70613253|397|28.71|0.16|7.46|-|2|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|41	chrX:70610543-70613253|397|28.71|0.16|7.46|-|2|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8345336914062	2	555.776939	1109.53933	0.18625	0.00010351	0.4881	0.00027128	0.67436	0.00037479	555.7772951491577	22.292	0.53772	22.292	21.996	22.533	0					28	18	2	0	0	0	0.26168	1	3071	3071		1.8442	0	1	86498			9657	184	5376	5376	12693	12693					-0.01106267139243755
FQWGDTHYSC	10	Unmodified	_FQWGDTHYSC_					0	0	0		ENSG00000196724|ENST00000396147|ZNF418	ENSG00000196724|ENST00000396147|ZNF418	ENSG00000196724|ENST00000396147|ZNF418	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.8433837890625	2	622.24548	1242.47641	-0.10749	-6.6884E-05	-1.6913	-0.0010524	-1.7987	-0.0011193	622.2444429643881	18.34	0.4004	18.222	17.957	18.358	-0.11739					16	13	2	0	0	0	0.32165	1	1929	1929		0.45834	0	1	41232			9658	7900	5377	5377	12694	12694					-0.13513156198905563
FQWRIRRF	8	Unmodified	_FQWRIRRF_					0	0	0			REV__ENST00000404875.6_1_9:134378440-134382761:+|nuORF	REV__ENST00000404875.6_1_9:134378440-134382761:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2468566894531	3	403.564836	1207.67268	0.17133	6.9144E-05	0.96341	0.0003888	1.1347	0.00045794	403.56513061696904	33.792	1.0261	33.792	33.31	34.336	0					72	36	3	0	0	0	0.44734	1	6533	6533		6.7232	0	1	136370	+		9659	20728	5378	5378	12695	12695					0.07715061547787627
FQWRIRRF	8	Unmodified	_FQWRIRRF_					0	0	0			REV__ENST00000404875.6_1_9:134378440-134382761:+|nuORF	REV__ENST00000404875.6_1_9:134378440-134382761:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.581298828125	3	403.564836	1207.67268	0.18452	7.4466E-05	0.59722	0.00024102	0.78174	0.00031548	403.89938367233447	33.579	0.96396	33.646	33.128	34.092	0.06636					54	34	2	0	0	0	0.34198	1	6500	6500		6.7232	0	1	163040	+		9660	20728	5378	5378	12696	12696					0.07715061547787627
FQYDRFFEK	9	Unmodified	_FQYDRFFEK_					0	0	0		ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.2643127441406	3	427.208384	1278.60332	-0.038805	-1.6578E-05	-0.13654	-5.8332E-05	-0.17535	-7.491E-05	427.2081596741927	49.758	0.67763	49.758	49.488	50.166	0					47	24	3	0	0	0	0.2498	1	11477	11477		10.899	3.29	1	475540			9661	523	5379	5379	12697	12697					-0.02483486982305294
FQYDRFFEK	9	Unmodified	_FQYDRFFEK_					0	0	0		ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.2081604003906	3	427.208384	1278.60332	-0.063465	-2.7113E-05	-0.34062	-0.00014551	-0.40408	-0.00017263	427.2082058524492	49.764	0.56924	49.809	49.566	50.136	0.044891					47	21	3	0	0	0	0.25449	1	11511	11511		7.4771	1.2427	1	508140			9662	523	5379	5379	12698	12698					-0.02483486982305294
FQYDRFFEK	9	Unmodified	_FQYDRFFEK_					0	0	0		ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.26416015625	3	427.208384	1278.60332	-0.07207	-3.0789E-05	-0.29265	-0.00012502	-0.36472	-0.00015581	427.208200078823	49.704	0.5809	49.724	49.457	50.038	0.020695					49	21	3	0	0	0	0.25449	1	11502	11502		7.4771	0	1	377380			9663	523	5379	5379	12699	12699					-0.02483486982305294
FQYLSQPF	8	Unmodified	_FQYLSQPF_					0	0	0			REV__nc|ENSG00000139880|Q86UP0|CDH24	REV__nc|ENSG00000139880|Q86UP0|CDH24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2552490234375	2	515.255643	1028.49673	-0.16446	-8.4737E-05	-0.6764	-0.00034852	-0.84086	-0.00043326	515.2552409727001	65.329	0.74956	65.418	65.006	65.756	0.088882					63	27	3	0	0	0	0.079438	1	16271	16271		64.236	6.765	1	1419200	+		9664	16011	5380	5380	12700	12700					-0.016376174768311103
FRAPQVMTY	9	Oxidation (M)	_FRAPQVM(Oxidation (M))TY_		FRAPQVM(1)TY		FRAPQVM(48)TY	0	0	1		nc|ENSG00000103021|Q9H0I3-2|CFAP263;ENSG00000103021|ENST00000219299|CCDC113	nc|ENSG00000103021|Q9H0I3-2|CFAP263	nc|ENSG00000103021|Q9H0I3-2|CFAP263	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.2657470703125	2	564.778959	1127.54336	0.37358	0.00021099	-0.61218	-0.00034574	-0.2386	-0.00013476	564.7787134243591	42.17	0.40368	42.261	42.037	42.441	0.091362					21	13	2	0	0	0	0.063853	1	9099	9099		47.749	15.443	1	153240			9665	1799	5381	5381	12701	12701		217			-0.015305009171697748
FRCIPDRY	8	Unmodified	_FRCIPDRY_					0	0	0		ENSG00000167941|ENST00000301691|SOST;nc|ENSG00000167941|Q9BQB4-2|SOST	ENSG00000167941|ENST00000301691|SOST	ENSG00000167941|ENST00000301691|SOST	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7936401367188	2	535.266019	1068.51748	0.54486	0.00029165	0.027443	1.4689E-05	0.57231	0.00030634	535.2660866605108	63.361	0.54797	63.361	63.117	63.665	0					32	19	2	0	0	0	0.34247	1	15773	15773		8.5933	0	1	378510			9666	6223	5382	5382	12702	12702					-0.014033503687869597
FRCPGKGNLPS	11	Unmodified	_FRCPGKGNLPS_					0	0	0		ENST00000488968.1_1_8:21952029-21952221:+|nuORF	ENST00000488968.1_1_8:21952029-21952221:+|nuORF	ENST00000488968.1_1_8:21952029-21952221:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3182373046875	2	588.303133	1174.59171	0.25241	0.00014849	-1.0845	-0.00063799	-0.83206	-0.0004895	588.3024007658462	73.396	0.83365	73.396	72.961	73.795	0					77	29	3	0	0	0	0.32017	1	18693	18693		20.415	4.2654	1	830510			9667	11141	5383	5383	12703	12703					0.011399927227330409
FRCPGKGNLPS	11	Unmodified	_FRCPGKGNLPS_					0	0	0		ENST00000488968.1_1_8:21952029-21952221:+|nuORF	ENST00000488968.1_1_8:21952029-21952221:+|nuORF	ENST00000488968.1_1_8:21952029-21952221:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3184204101562	2	588.303133	1174.59171	0.20267	0.00011923	-1.0304	-0.00060621	-0.82777	-0.00048698	588.3023931728859	73.389	0.91463	73.442	72.981	73.895	0.053841					76	32	3	0	0	0	0.32017	1	18670	18670		20.415	3.3016	1	866830			9668	11141	5383	5383	12704	12704					0.011399927227330409
FRCPGKGNLPS	11	Unmodified	_FRCPGKGNLPS_					0	0	0		ENST00000488968.1_1_8:21952029-21952221:+|nuORF	ENST00000488968.1_1_8:21952029-21952221:+|nuORF	ENST00000488968.1_1_8:21952029-21952221:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3182983398438	2	588.303133	1174.59171	0.37945	0.00022323	-1.1814	-0.00069502	-0.80195	-0.00047179	588.3022888752323	73.4	0.81788	73.37	72.98	73.798	-0.029305					75	29	3	0	0	0	0.32017	2	18743	18743;18844		20.415	3.0078	1	875330			9669	11141	5383	5383	12705;12706	12705					0.011399927227330409
FRCRHFTK	8	Unmodified	_FRCRHFTK_					0	0	0			REV__nc|ENSG00000106034|A4D0V7-2|CPED1	REV__nc|ENSG00000106034|A4D0V7-2|CPED1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.824951171875	2	547.787453	1093.56035	0.62983	0.00034501	-0.025646	-1.4049E-05	0.60418	0.00033096	547.7875687311739	29.24	0.7091	29.24	28.924	29.633	0					34	25	2	0	0	0	0.34117	1	5288	5288		9.3831	0	1	148620	+		9670	14505	5384	5384	12707	12707					0.017314644792804756
FRCRHFTK	8	Unmodified	_FRCRHFTK_					0	0	0			REV__nc|ENSG00000106034|A4D0V7-2|CPED1	REV__nc|ENSG00000106034|A4D0V7-2|CPED1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7879638671875	2	547.787453	1093.56035	0.35037	0.00019193	0.20895	0.00011446	0.55932	0.00030639	547.7877327977495	29.309	0.53107	29.323	29.033	29.564	0.013475					37	18	3	0	0	0	0.40115	1	5237	5237		19.257	5.3509	1	166590	+		9671	14505	5384	5384	12708	12708					0.017314644792804756
FREAPQAK	8	Unmodified	_FREAPQAK_					0	0	0			REV__nc|ENSG00000251192|Q2M3X9-2|ZNF674	REV__nc|ENSG00000251192|Q2M3X9-2|ZNF674	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.26904296875	2	473.758884	945.503215	0.28868	0.00013676	0.93401	0.0004425	1.2227	0.00057926	473.7593433260266	19.672	0.83514	19.616	19.227	20.062	-0.055693					55	29	3	0	0	0	0.43302	1	2236	2236		11.64	3.047	1	165210	+		9672	19219	5385	5385	12709	12709					0.02828320474566226
FREAPQAK	8	Unmodified	_FREAPQAK_					0	0	0			REV__nc|ENSG00000251192|Q2M3X9-2|ZNF674	REV__nc|ENSG00000251192|Q2M3X9-2|ZNF674	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	473.758884	945.503215	-0.033465	-1.5854E-05	1.2509	0.00059265	1.2175	0.00057679	473.7595262423701	19.604	0.83433	19.604	19.125	19.96	0	-0.0048051	0.00012504	NaN	11.64	59	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140380	+		9673	19219	5385	5385							0.02828320474566226
FREAPQAK	8	Unmodified	_FREAPQAK_					0	0	0			REV__nc|ENSG00000251192|Q2M3X9-2|ZNF674	REV__nc|ENSG00000251192|Q2M3X9-2|ZNF674	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	473.758884	945.503215	0.22393	0.00010609	1.1451	0.0005425	1.369	0.00064859	473.75942095364076	19.722	0.75584	19.606	19.284	20.04	-0.11592	-0.0028578	2.4746E-05	NaN	11.64	53	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170360	+		9674	19219	5385	5385							0.02828320474566226
FREHRQTI	8	Unmodified	_FREHRQTI_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2830200195312	2	543.793789	1085.57303	0.53714	0.00029209	4.0873	0.0022227	4.6245	0.0025148	544.2996600900084	67.656	0.73042	67.64	67.393	68.124	-0.016304					34	25	2	0	0	0	0.39068	1	16954	16954		20.454	0.039092	1	290220			9675	3868	5386	5386	12710	12710					0.03366199143192716
FRFEEPVVL	9	Unmodified	_FRFEEPVVL_					0	0	0		ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.294677734375	2	568.310949	1134.60735	0.31123	0.00017688	-0.5549	-0.00031535	-0.24366	-0.00013848	568.3104720645865	67.105	0.53544	67.183	67.04	67.576	0.078041					42	18	3	0	0	0	0.2719	1	16832	16832		13.042	1.4022	1	485110			9676	4811	5387	5387	12711	12711					0.045426025114238655
FRFEEPVVL	9	Unmodified	_FRFEEPVVL_					0	0	0		ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2950439453125	2	568.310949	1134.60735	0.096167	5.4653E-05	-0.094304	-5.3594E-05	0.001863	1.0588E-06	568.3106785628754	67.253	0.50215	67.237	67.06	67.562	-0.016296					38	16	3	0	0	0	0.24471	1	16855	16855		17.113	1.2657	1	496380			9677	4811	5387	5387	12712	12712					0.045426025114238655
FRFPKKWVA	9	Unmodified	_FRFPKKWVA_					0	0	0			REV__nc|ENSG00000205702|A0A087X1C5|CYP2D7	REV__nc|ENSG00000205702|A0A087X1C5|CYP2D7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3425903320312	2	589.845294	1177.67603	0.48546	0.00028635	-1.1949	-0.00070483	-0.70947	-0.00041848	589.8447242645753	89.71	0.40958	89.709	89.621	90.031	-0.00080872					53	38	2	0	0	0	0.25938	1	23750	23750		4.3292	4.3292	1	152430	+		9678	23173	5388	5388	12713	12713					0.09430311601795438
FRGRPGSGF	9	Unmodified	_FRGRPGSGF_					0	0	0		ENST00000466994.5_1_1:6267553-6267979:+|nuORF;nc|ENSG00000158286|Q6ZRF8-2|RNF207	ENST00000466994.5_1_1:6267553-6267979:+|nuORF	ENST00000466994.5_1_1:6267553-6267979:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.79791259765625	2	490.756675	979.498798	0.18639	9.147E-05	1.5032	0.00073773	1.6896	0.0008292	490.7574623305302	23.771	0.34976	23.771	23.593	23.943	0					15	11	2	0	0	0	0.2451	1	3497	3497		10.824	2.2306	1	35820			9679	10817	5389	5389	12714	12714					0.008228560516727157
FRHAQLLD	8	Unmodified	_FRHAQLLD_					0	0	0		nc|ENSG00000102032|P51606-3|RENBP;ENSG00000102032|ENST00000393700|RENBP;nc|ENSG00000102032|P51606-2|RENBP	nc|ENSG00000102032|P51606-3|RENBP	nc|ENSG00000102032|P51606-3|RENBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7929382324219	2	500.272158	998.529764	0.54241	0.00027135	-1.7026	-0.00085176	-1.1602	-0.00058041	500.2711750138551	64.398	0.42765	64.388	64.152	64.58	-0.0095367					21	15	2	0	0	0	0.32886	1	15948	15948		21.747	2.3076	1	221850			9680	1738	5390	5390	12715	12715					0.030440093659080958
FRHDNSSNLFR	11	Unmodified	_FRHDNSSNLFR_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.56951904296875	3	464.897092	1391.66945	-0.25772	-0.00011981	-0.081796	-3.8027E-05	-0.33952	-0.00015784	465.2316437981046	27.592	0.57027	27.592	27.354	27.924	0					41	19	3	0	0	0	0.33189	1	4766	4766		5.8681	1.7515	1	221780	+		9681	14768	5391	5391	12716	12716					-0.010722780875539684
FRHKSSLTYH	10	Unmodified	_FRHKSSLTYH_					0	0	0		ENSG00000198633|ENST00000433050|ZNF534;nc|ENSG00000198633|Q76KX8|ZNF534	ENSG00000198633|ENST00000433050|ZNF534	ENSG00000198633|ENST00000433050|ZNF534	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3359985351562	2	638.333279	1274.652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.12	1	92.12	91.62	92.62	0.00046539								0	0	0	0.37739	1	24482	24482		3.2813	0.28607	1				9682	8097	5392	5392	12717	12717					0.025664263774842766
FRITALRVHV	10	Unmodified	_FRITALRVHV_					0	0	0		ENST00000490777.2_10:133753687-133754318:+|nuORF	ENST00000490777.2_10:133753687-133754318:+|nuORF	ENST00000490777.2_10:133753687-133754318:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3707885742188	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.02	1	118.02	117.52	118.52	0								0	0	0	0.38202	1	30500	30500		0.40072	0.093686	1				9683	11166	5393	5393	12718	12718					0.13292484033490837
FRLARKWQA	9	Unmodified	_FRLARKWQA_					0	0	0		ENSG00000102897|ENST00000567954|LYRM1	ENSG00000102897|ENST00000567954|LYRM1	ENSG00000102897|ENST00000567954|LYRM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.7398071289062	2	588.343449	1174.67235	-0.04718	-2.7758E-05	0.81579	0.00047996	0.76861	0.00045221	588.3459058587782	12.968	0.57508	12.901	12.64	13.215	-0.067495					42	19	4	0	0	0	0.26257	1	263	263		0.52476	0	1	65817			9684	1790	5394	5394	12719	12719					0.09199641827945015
FRLQESFF	8	Unmodified	_FRLQESFF_					0	0	0		ENSG00000100523|ENST00000673822|DDHD1	ENSG00000100523|ENST00000673822|DDHD1	ENSG00000100523|ENST00000673822|DDHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2953491210938	2	537.274367	1072.53418	0.46076	0.00024756	-0.12676	-6.8104E-05	0.33401	0.00017945	537.2744027383121	63.2	0.55408	63.296	62.985	63.539	0.095722					42	19	3	0	0	0	0.43043	1	15634	15634		12.532	0	1	576680			9685	1606	5395	5395	12720	12720					0.0008147378880494216
FRLRDPYI	8	Unmodified	_FRLRDPYI_					0	0	0		nc|ENSG00000169241|Q9BRV3-3|SLC50A1;ENSG00000169241|ENST00000368404|SLC50A1;ENST00000484027.1_1_1:155108806-155110754:+|nuORF;ENST00000368405.7_1_1:155108359-155110754:+|nuORF;ENST00000490276.5_1_1:155108359-155110646:+|nuORF;nc|ENSG00000169241|Q9BRV3-2|SLC50A1	nc|ENSG00000169241|Q9BRV3-3|SLC50A1	nc|ENSG00000169241|Q9BRV3-3|SLC50A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3032836914062	2	540.303458	1078.59236	0.50019	0.00027026	-0.63518	-0.00034319	-0.13498	-7.293E-05	540.3026800511626	57.642	1.8732	57.728	56.942	58.815	0.085621					113	67	4	0	0	0	0.37937	1	13957	13957		21.747	2.4897	1	1808900			9686	6340	5396	5396	12721	12721					0.05621155434073444
FRNKYHVEK	9	Unmodified	_FRNKYHVEK_					0	0	0			REV__ENST00000477204.5_1_X:135279271-135289432:+|nuORF	REV__ENST00000477204.5_1_X:135279271-135289432:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.2562255859375	2	610.830372	1219.64619	0.42596	0.00026019	-0.11314	-6.9111E-05	0.31282	0.00019108	610.8302730295571	37.94	0.56213	37.94	37.707	38.269	0					44	19	4	0	0	0	0.25163	1	7928	7928		13.042	13.042	1	401250	+		9687	13465	5397	5397	12722	12722					0.04515327865783547
FRNVEVLIY	9	Unmodified	_FRNVEVLIY_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.8240356445312	2	576.824224	1151.63389	0.014346	8.2751E-06	0.20945	0.00012082	0.2238	0.00012909	576.824036007341	60.249	0.87389	60.249	60.006	60.88	0					103	31	6	0	0	0	0.03069	3	14745	14700;14745;14790		60.074	23.947	1	4418100			9688	1226	5398	5398	12723;12724;12725	12724					0.06414291402757044
FRNVEVLIY	9	Unmodified	_FRNVEVLIY_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8243408203125	2	576.824224	1151.63389	-0.13135	-7.5768E-05	0.26133	0.00015074	0.12997	7.4971E-05	576.8240957606281	60.165	0.90354	60.26	59.99	60.894	0.095093					101	32	5	0	0	0	0.023967	3	14742	14645;14693;14742		62.573	26.446	1	4139600			9689	1226	5398	5398	12726;12727;12728	12728					0.06414291402757044
FRNVEVLIY	9	Unmodified	_FRNVEVLIY_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8241577148438	2	576.824224	1151.63389	0.18488	0.00010664	0.28902	0.00016671	0.4739	0.00027335	576.8239970001495	60.263	0.88931	60.251	59.997	60.886	-0.011486					118	32	6	0	0	0	0.016723	2	14733	14683;14733		69.105	31.131	1	4252400			9690	1226	5398	5398	12729;12730	12730					0.06414291402757044
FRPAGLPEKY	10	Unmodified	_FRPAGLPEKY_					0	0	0		ENSG00000134339|ENST00000256733|SAA2;ENSG00000173432|ENST00000356524|SAA1	ENSG00000134339|ENST00000256733|SAA2	ENSG00000134339|ENST00000256733|SAA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3214721679688	2	589.321848	1176.62914	0.40131	0.0002365	-1.0165	-0.00059902	-0.61514	-0.00036252	589.3211128168091	38.391	0.4084	38.481	38.294	38.702	0.090881					25	14	2	0	0	0	0.18709	1	8011	8011		34.222	24.148	1	286060			9691	3776	5399	5399	12731	12731					0.04789407260000189
FRPAGLPEKY	10	Unmodified	_FRPAGLPEKY_					0	0	0		ENSG00000134339|ENST00000256733|SAA2;ENSG00000173432|ENST00000356524|SAA1	ENSG00000134339|ENST00000256733|SAA2	ENSG00000134339|ENST00000256733|SAA2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	589.321848	1176.62914	0.16255	9.5794E-05	-0.44616	-0.00026293	-0.28361	-0.00016714	589.3214118865809	38.492	0.44268	38.492	38.269	38.711	0	0.0021771	0.00044939	NaN	34.222	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271930			9692	3776	5399	5399							0.04789407260000189
FRPGRAPYSGF	11	Unmodified	_FRPGRAPYSGF_					0	0	0			REV__nc|ENSG00000063176|Q9NRA0-3|SPHK2	REV__nc|ENSG00000063176|Q9NRA0-3|SPHK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.26629638671875	3	418.884123	1253.63054	-0.2473	-0.00010359	-0.40925	-0.00017143	-0.65655	-0.00027502	419.2184749404322	41.107	0.64513	41.107	40.796	41.441	0					93	23	5	0	0	0	0.3299	1	8807	8807		9.7643	4.4674	1	1199200	+		9693	13639	5400	5400	12732	12732					0.013870413487211408
FRPGRAPYSGF	11	Unmodified	_FRPGRAPYSGF_					0	0	0			REV__nc|ENSG00000063176|Q9NRA0-3|SPHK2	REV__nc|ENSG00000063176|Q9NRA0-3|SPHK2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	418.884123	1253.63054	0.026845	1.1245E-05	-0.7361	-0.00030834	-0.70925	-0.00029709	419.2182526508281	40.698	0.75689	40.798	40.505	41.262	0.099403	-0.12475	-0.00015636	NaN	9.7643	75	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1308000	+		9694	13639	5400	5400							0.013870413487211408
FRPKTKLAPV	10	Unmodified	_FRPKTKLAPV_					0	0	0			REV__ENSG00000143867|ENST00000272223|OSR1	REV__ENSG00000143867|ENST00000272223|OSR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.268310546875	2	578.863683	1155.71281	0.16561	9.5866E-05	-2.9563	-0.0017113	-2.7906	-0.0016154	578.8619840865275	17.95	0.18868	17.95	17.835	18.024	0					6	5	2	0	0	0	0.32165	1	1763	1763		0.45834	0	1	22462	+		9695	16207	5401	5401	12733	12733					0.14118563427655317
FRPLYTHEY	9	Unmodified	_FRPLYTHEY_					0	0	0		ENSG00000008952|ENST00000337002|SEC62	ENSG00000008952|ENST00000337002|SEC62	ENSG00000008952|ENST00000337002|SEC62	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.8106689453125	2	613.303655	1224.59276	0.61002	0.00037413	0.045603	2.7968E-05	0.65562	0.0004021	613.3030442845459	37.54	0.50156	37.54	37.233	37.735	0					38	17	4	0	0	0	0.14961	1	7712	7712		41.84	20.303	1	881720			9696	404	5402	5402	12734	12734					-0.010554696367080396
FRPLYTHEY	9	Unmodified	_FRPLYTHEY_					0	0	0		ENSG00000008952|ENST00000337002|SEC62	ENSG00000008952|ENST00000337002|SEC62	ENSG00000008952|ENST00000337002|SEC62	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.2047424316406	3	409.204862	1224.59276	0.13236	5.4162E-05	-0.3681	-0.00015063	-0.23574	-9.6464E-05	409.2046701131731	37.483	1.0724	37.57	37.218	38.29	0.08741					110	38	4	0	0	0	0.0027197	4	7722	7676;7722;7765;7817		104.48	90.079	1	3600000			9697	404	5402	5402	12735;12736;12737;12738	12736					-0.010554696367080396
FRPLYTHEY	9	Unmodified	_FRPLYTHEY_					0	0	0		ENSG00000008952|ENST00000337002|SEC62	ENSG00000008952|ENST00000337002|SEC62	ENSG00000008952|ENST00000337002|SEC62	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.8107299804688	2	613.303655	1224.59276	0.30573	0.0001875	-0.90737	-0.00055649	-0.60164	-0.00036899	613.3028794422447	37.471	0.27769	37.558	37.412	37.69	0.087406					24	9	3	0	0	0	0.050251	1	7706	7706		62.573	36.305	1	1013000			9698	404	5402	5402	12739	12739					-0.010554696367080396
FRPLYTHEY	9	Unmodified	_FRPLYTHEY_					0	0	0		ENSG00000008952|ENST00000337002|SEC62	ENSG00000008952|ENST00000337002|SEC62	ENSG00000008952|ENST00000337002|SEC62	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.20477294921875	3	409.204862	1224.59276	0.093333	3.8192E-05	-0.26579	-0.00010876	-0.17246	-7.057E-05	409.20471612726897	37.409	1.0938	37.502	37.222	38.316	0.093018					114	39	4	0	0	0	0.0023309	3	7676	7676;7721;7776		107.56	90.121	1	3361700			9699	404	5402	5402	12740;12741;12742	12740					-0.010554696367080396
FRPLYTHEY	9	Unmodified	_FRPLYTHEY_					0	0	0		ENSG00000008952|ENST00000337002|SEC62	ENSG00000008952|ENST00000337002|SEC62	ENSG00000008952|ENST00000337002|SEC62	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.8106689453125	2	613.303655	1224.59276	0.27351	0.00016774	-1.2861	-0.00078876	-1.0126	-0.00062101	613.3026632791231	37.432	0.28685	37.525	37.363	37.65	0.093018					25	10	3	0	0	0	0.1939	1	7657	7657		30.637	13.524	1	905180			9700	404	5402	5402	12743	12743					-0.010554696367080396
FRQIIAVVL	9	Unmodified	_FRQIIAVVL_					0	0	0		ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000118707|Q9GZN2-2|TGIF2;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF	ENSG00000101084|ENST00000344795|RAB5IF	ENSG00000101084|ENST00000344795|RAB5IF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.8400268554688	2	529.839677	1057.6648	0.50351	0.00026678	0.36052	0.00019102	0.86403	0.0004578	529.8398135238084	67.662	0.67986	67.662	67.368	68.048	0					53	23	3	0	0	0	0.17787	1	16983	16983		26.884	12.045	1	735860			9701	1661	5403	5403	12744	12744					0.13827489507639257
FRQIIAVVL	9	Unmodified	_FRQIIAVVL_					0	0	0		ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000118707|Q9GZN2-2|TGIF2;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF	ENSG00000101084|ENST00000344795|RAB5IF	ENSG00000101084|ENST00000344795|RAB5IF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.8399658203125	2	529.839677	1057.6648	0.50514	0.00026765	0.37117	0.00019666	0.87631	0.0004643	529.8397883934397	67.513	0.81154	67.591	67.382	68.193	0.078041					62	28	4	0	0	0	0.12846	2	16989	16935;16989		34.102	13.649	1	698750			9702	1661	5403	5403	12745;12746	12746					0.13827489507639257
FRQIIAVVL	9	Unmodified	_FRQIIAVVL_					0	0	0		ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000118707|Q9GZN2-2|TGIF2;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF	ENSG00000101084|ENST00000344795|RAB5IF	ENSG00000101084|ENST00000344795|RAB5IF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.8399047851562	2	529.839677	1057.6648	0.41379	0.00021924	0.43025	0.00022796	0.84404	0.00044721	529.8398371097691	67.652	0.79356	67.636	67.357	68.151	-0.016296					56	27	3	0	0	0	0.12846	2	16974	16974;17027		34.102	17.16	1	712350			9703	1661	5403	5403	12747;12748	12747					0.13827489507639257
FRQLSTFGKK	10	Unmodified	_FRQLSTFGKK_					0	0	0			REV__ENSG00000178235|ENST00000674365|SLITRK1	REV__ENSG00000178235|ENST00000674365|SLITRK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.37060546875	2	606.348397	1210.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.36	1	113.36	112.86	113.86	0								0	0	0	0.38187	1	29444	29444		1.3295	0.80477	1		+		9704	18027	5404	5404	12749	12749					0.08532785042643809
FRQQLRKTT	9	Unmodified	_FRQQLRKTT_					0	0	0		ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.342041015625	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.17	1	118.19	117.69	118.69	0.023476								0	0	0	0.2672	1	30607	30607		0.52476	0	1				9705	4427	5405	5405	12750	12750					0.09147016757128767
FRQQRPLEF	9	Unmodified	_FRQQRPLEF_					0	0	0		ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.556396484375	3	407.556007	1219.64619	-0.02606	-1.0621E-05	1.2331	0.00050255	1.207	0.00049193	407.55660826109795	37.827	1.2855	37.925	37.552	38.838	0.097527					126	46	4	0	0	0	0.24833	1	7804	7804		16.566	5.0712	1	1626600			9706	1363	5406	5406	12751	12751					0.04515327865783547
FRQQRPLEF	9	Unmodified	_FRQQRPLEF_					0	0	0		ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	ENSG00000089693|ENST00000203630|MLF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.2560424804688	2	610.830372	1219.64619	0.24222	0.00014795	0.095348	5.8241E-05	0.33756	0.00020619	610.8305685724217	37.792	0.8627	37.889	37.628	38.491	0.097527					54	30	3	0	0	0	0.24727	1	7865	7865		17.113	7.039	1	339600			9707	1363	5406	5406	12752	12752					0.04515327865783547
FRQSSSLFRH	10	Unmodified	_FRQSSSLFRH_					0	0	0		nc|ENSG00000204519|Q7Z340-2|ZNF551;ENSG00000204519|ENST00000282296|ZNF551	nc|ENSG00000204519|Q7Z340-2|ZNF551	nc|ENSG00000204519|Q7Z340-2|ZNF551	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.22308349609375	3	422.223028	1263.64725	0.21457	9.0596E-05	0.083759	3.5365E-05	0.29833	0.00012596	422.2231019596827	32.422	0.99992	32.422	32.091	33.091	0					98	35	4	0	0	0	0.33104	1	6161	6161		10.315	0	1	1387800			9708	8233	5407	5407	12753	12753					0.025975422347073618
FRRDSDLTCL	10	Unmodified	_FRRDSDLTCL_					0	0	0		ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;nc|ENSG00000162601|Q5VVJ2-3|MYSM1	ENSG00000162601|ENST00000472487|MYSM1	ENSG00000162601|ENST00000472487|MYSM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2048645019531	3	409.204645	1224.59211	0.25782	0.0001055	0.024747	1.0126E-05	0.28257	0.00011563	409.2045874075087	37.597	1.0348	37.597	37.285	38.32	0					115	36	5	0	0	0	0.35624	1	7820	7820		11.518	0	1	3218500			9709	5585	5408	5408	12754	12754					-0.011206323480564606
FRRFKRSA	8	Unmodified	_FRRFKRSA_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1;PLOD1|p.D90Lfs*15|1|0.08|ENSG00000083444|chr1:11949870-11949871|-/CTTA|frameshift_variant;ENST00000358133.5_1_1:11994791-12014648:+|nuORF	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.3378295898438	2	534.314692	1066.61483	0.42158	0.00022525	-1.7376	-0.00092842	-1.316	-0.00070317	534.3136998014978	21.694	0.4199	21.645	21.461	21.881	-0.049377					21	14	2	0	0	0	0.34408	1	2877	2877		2.3027	0	1	111730			9710	1220	5409	5409	12755	12755					0.08418799622381812
FRRHNPRRK	9	Unmodified	_FRRHNPRRK_					0	0	0			REV__ENSG00000283567|ENST00000635964|C19orf85	REV__ENSG00000283567|ENST00000635964|C19orf85	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3770141601562	2	633.873771	1265.73299	-0.062415	-3.9564E-05	0.76761	0.00048657	0.70519	0.000447	634.3781388004077	113.03	0.31796	113.03	112.94	113.26	0					66	39	2	0	0	0	0.35563	1	29350	29350		0.52476	0	1	44539	+		9711	19368	5410	5410	12756	12756					0.11075171930860961
FRRRRRLGH	9	Unmodified	_FRRRRRLGH_					0	0	0			REV__ENSG00000080573|ENST00000264828|COL5A3	REV__ENSG00000080573|ENST00000264828|COL5A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.3814086914062	2	627.381763	1252.74897	-0.033487	-2.1009E-05	0.45485	0.00028537	0.42137	0.00026436	627.3816317037266	103.61	1.0906	103.61	103.49	104.58	0					325	150	3	0	0	0	0.32733	1	27643	27643		4.756	1.7608	1	28103000	+		9712	13890	5411	5411	12757	12757					0.1327087816778203
FRRRRRLGH	9	Unmodified	_FRRRRRLGH_					0	0	0			REV__ENSG00000080573|ENST00000264828|COL5A3	REV__ENSG00000080573|ENST00000264828|COL5A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.3827514648438	2	627.381763	1252.74897	-0.14775	-9.2694E-05	0.66777	0.00041895	0.52002	0.00032625	627.3819610401042	103.66	0.95815	103.67	103.45	104.41	0.0082626					353	133	3	0	0	0	0.34536	1	27694	27694		2.0598	0.73022	1	25439000	+		9713	13890	5411	5411	12758	12758					0.1327087816778203
FRRRRWRRKMA	11	Unmodified	_FRRRRWRRKMA_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.9857177734375	3	540.319783	1617.93752	0.53307	0.00028803	-0.66924	-0.0003616	-0.13617	-7.3577E-05	540.3193356936393	97.546	0.61361	97.539	97.413	98.027	-0.0068283					100	68	2	0	0	0	0.33351	1	26113	26113		0	0	1	350240			9714	4119	5412	5412	12759	12759					0.15326787749722826
FRRSQRRNIPR	11	Unmodified	_FRRSQRRNIPR_					0	0	0			REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF	REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.9590148925781	3	495.958908	1484.85489	0.3017	0.00014963	-0.13055	-6.4746E-05	0.17116	8.4886E-05	495.95879638391847	93.351	1.4786	93.351	92.57	94.048	0					465	121	4	0	0	0	0.47633	5	24696	24696;24732;24769;24956;25039		1.2148	1.2148	1	2291900	+		9715	21005	5413	5413	12760;12761;12762;12763;12764	12760					0.13186169222603894
FRRSQRRNIPR	11	Unmodified	_FRRSQRRNIPR_					0	0	0			REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF	REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.95904541015625	3	495.958908	1484.85489	0.43562	0.00021605	0.048996	2.43E-05	0.48462	0.00024035	495.9589037802029	94.926	2.7566	94.924	94.016	96.772	-0.0020142					920	253	5	0	0	0	0.47633	1	25438	25438		1.2148	0.70888	1	5553400	+		9716	21005	5413	5413	12765	12765					0.13186169222603894
FRRSRPWA	8	Unmodified	_FRRSRPWA_					0	0	0		ENST00000273062.6_1_2:219270400-219270469:+|nuORF	ENST00000273062.6_1_2:219270400-219270469:+|nuORF	ENST00000273062.6_1_2:219270400-219270469:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8154296875	2	538.299042	1074.58353	0.085497	4.6023E-05	2.5486	0.0013719	2.6341	0.001418	538.3004607040117	13.007	0.25642	12.908	12.785	13.042	-0.099291					14	8	2	0	0	0	0.44569	1	306	306		7.2892	0.18751	1	63910			9717	9091	5414	5414	12766	12766					0.04922226588269041
FRRTVAQIL	9	Unmodified	_FRRTVAQIL_					0	0	0			REV__ENSG00000166825|ENST00000300060|ANPEP	REV__ENSG00000166825|ENST00000300060|ANPEP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.3381958007812	2	552.337833	1102.66111	0.39307	0.00021711	0.064334	3.5534E-05	0.45741	0.00025264	552.3378319987331	24.408	1.077	24.335	23.905	24.982	-0.072559					95	33	4	0	0	0	0.29176	1	3700	3700		10.074	0.6908	1	413240	+		9718	17343	5415	5415	12767	12767					0.11388819733792843
FRRWTQRRRRN	11	Unmodified	_FRRWTQRRRRN_					0	0	0		ENST00000233468.4_1_2:24290678-24291201:-|nuORF	ENST00000233468.4_1_2:24290678-24291201:-|nuORF	ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3160400390625	3	544.645324	1630.91414	0.73405	0.0003998	1.4244	0.0007758	2.1585	0.0011756	545.3157423564385	90.452	0.79429	90.452	90.088	90.883	0.0003891					49	23	3	0	0	0	0.33352	1	23942	23942		0.073264	0.073264	1	250570			9719	8869	5416	5416	12768	12768					0.12392065236736016
FRSKIERKK	9	Unmodified	_FRSKIERKK_					0	0	0		ENST00000338051.4_1_5:134192491-134192722:+|nuORF	ENST00000338051.4_1_5:134192491-134192722:+|nuORF	ENST00000338051.4_1_5:134192491-134192722:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.8716430664062	2	596.369664	1190.72478	0.46638	0.00027813	-0.45719	-0.00027266	0.0091855	5.4779E-06	596.8709397357907	91.33	0.178	91.33	91.251	91.429	0					17	12	2	0	0	0	0.34809	1	24268	24268		1.6526	0.17072	1	114760			9720	9500	5417	5417	12769	12769					0.13704180170884683
FRSKIERKK	9	Unmodified	_FRSKIERKK_					0	0	0		ENST00000338051.4_1_5:134192491-134192722:+|nuORF	ENST00000338051.4_1_5:134192491-134192722:+|nuORF	ENST00000338051.4_1_5:134192491-134192722:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	596.369664	1190.72478	0.5094	0.00030379	-0.45915	-0.00027382	0.050253	2.997E-05	596.3693113043684	91.138	0.25298	91.229	91.191	91.444	0.090668	-0.069287	-0.00020275	NaN	1.6526	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152070			9721	9500	5417	5417							0.13704180170884683
FRSKIERKK	9	Unmodified	_FRSKIERKK_					0	0	0		ENST00000338051.4_1_5:134192491-134192722:+|nuORF	ENST00000338051.4_1_5:134192491-134192722:+|nuORF	ENST00000338051.4_1_5:134192491-134192722:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	596.369664	1190.72478	0.55983	0.00033387	0.029101	1.7355E-05	0.58893	0.00035122	596.3697372779212	91.335	0.19496	91.336	91.205	91.4	0.00046539	0.03744	0.00037961	NaN	1.6526	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191310			9722	9500	5417	5417							0.13704180170884683
FRSWPWLRTPG	11	Unmodified	_FRSWPWLRTPG_					0	0	0			REV__ENST00000567780.1_1_12:54377735-54378077:-|nuORF	REV__ENST00000567780.1_1_12:54377735-54378077:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.5873718261719	3	468.250806	1401.73059	-0.030872	-1.4456E-05	4.1814	0.0019579	4.1505	0.0019435	468.5871292862838	26.391	0.42461	26.352	26.178	26.603	-0.038671					27	14	3	0	0	0	0.46554	1	4360	4360		2.6312	0.19645	1	106570	+		9723	22383	5418	5418	12770	12770					0.045792786825359144
FRSWPWLRTPG	11	Unmodified	_FRSWPWLRTPG_					0	0	0			REV__ENST00000567780.1_1_12:54377735-54378077:-|nuORF	REV__ENST00000567780.1_1_12:54377735-54378077:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	468.250806	1401.73059	-0.086964	-4.0721E-05	4.0083	0.0018769	3.9214	0.0018362	468.2525083122322	26.335	0.4283	26.335	26.215	26.644	0	-0.019527	-8.1197E-05	NaN	2.6312	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88921	+		9724	22383	5418	5418							0.045792786825359144
FRSWPWLRTPG	11	Unmodified	_FRSWPWLRTPG_					0	0	0			REV__ENST00000567780.1_1_12:54377735-54378077:-|nuORF	REV__ENST00000567780.1_1_12:54377735-54378077:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	468.250806	1401.73059	-0.030872	-1.4456E-05	4.1814	0.0019579	4.1505	0.0019435	468.5871292862838	26.391	0.42461	26.352	26.178	26.603	-0.038671	-0.0028756	0.00016195	NaN	2.6312	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106570	+		9725	22383	5418	5418							0.045792786825359144
FRSWPWLRTPG	11	Unmodified	_FRSWPWLRTPG_					0	0	0			REV__ENST00000567780.1_1_12:54377735-54378077:-|nuORF	REV__ENST00000567780.1_1_12:54377735-54378077:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	468.250806	1401.73059	0.29982	0.00014039	4.0564	0.0018994	4.3563	0.0020398	468.25283692351945	26.4	0.37407	26.377	26.266	26.64	-0.022238	0.022403	-1.3615E-05	NaN	2.6312	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81724	+		9726	22383	5418	5418							0.045792786825359144
FRTHKFHF	8	Unmodified	_FRTHKFHF_					0	0	0			REV__ENST00000196371.9_1_5:41731773-41731827:-|nuORF	REV__ENST00000196371.9_1_5:41731773-41731827:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3070068359375	2	560.295968	1118.57738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.118	1	95.201	94.701	95.701	0.082779								0	0	0	0.37724	1	25396	25396		2.3027	0	1		+		9727	19393	5419	5419	12771	12771					0.022837083567537775
FRTPRHRPEF	10	Unmodified	_FRTPRHRPEF_					0	0	0			REV__ENSG00000183688|ENST00000329099|RFLNB	REV__ENSG00000183688|ENST00000329099|RFLNB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2421875	3	448.242422	1341.70544	0.076916	3.4477E-05	0.25122	0.00011261	0.32814	0.00014708	448.24239416854226	46.459	1.1581	46.459	46.222	47.38	0					73	41	4	0	0	0	0.35624	1	10520	10520		11.518	11.518	1	1170100	+		9728	18278	5420	5420	12772	12772					0.04825223879970508
FRTPRHRPEF	10	Unmodified	_FRTPRHRPEF_					0	0	0			REV__ENSG00000183688|ENST00000329099|RFLNB	REV__ENSG00000183688|ENST00000329099|RFLNB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2425231933594	3	448.242422	1341.70544	0.076916	3.4477E-05	0.25122	0.00011261	0.32814	0.00014708	448.24239416854226	46.459	1.1581	46.459	46.222	47.38	0					73	41	4	0	0	0	0.31651	1	10472	10472		11.518	11.518	1	1170100	+		9729	18278	5420	5420	12773	12773					0.04825223879970508
FRTPRHRPEF	10	Unmodified	_FRTPRHRPEF_					0	0	0			REV__ENSG00000183688|ENST00000329099|RFLNB	REV__ENSG00000183688|ENST00000329099|RFLNB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.2424621582031	3	448.242422	1341.70544	0.088227	3.9547E-05	0.19335	8.6667E-05	0.28158	0.00012621	448.24250429453383	46.251	1.1156	46.31	45.792	46.908	0.059834					66	40	3	0	0	0	0.4022	1	10466	10466		3.0723	0.22898	1	1371600	+		9730	18278	5420	5420	12774	12774					0.04825223879970508
FRTPRHRPEF	10	Unmodified	_FRTPRHRPEF_					0	0	0			REV__ENSG00000183688|ENST00000329099|RFLNB	REV__ENSG00000183688|ENST00000329099|RFLNB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.2427673339844	3	448.242422	1341.70544	0.12692	5.6893E-05	0.24884	0.00011154	0.37576	0.00016843	448.2426217129364	46.258	0.93859	46.323	45.84	46.779	0.065048					79	33	4	0	0	0	0.36279	1	10422	10422		10.315	10.315	1	1386100	+		9731	18278	5420	5420	12775	12775					0.04825223879970508
FRVGNVQEL	9	Unmodified	_FRVGNVQEL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7327880859375	2	531.290548	1060.56654	0.72346	0.00038437	-1.1608	-0.00061673	-0.43735	-0.00023236	531.2900455170404	48.222	0.23868	48.266	48.191	48.43	0.04332					10	8	2	0	0	0	0.20167	1	11020	11020		29.082	8.628	1	167870			9732	5669	5421	5421	12776	12776					0.03868261191814781
FRVGNVQEL	9	Unmodified	_FRVGNVQEL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.290548	1060.56654	0.70528	0.00037471	-1.4543	-0.00077267	-0.74903	-0.00039795	531.2899446320844	48.314	0.24314	48.314	48.205	48.448	0	0.024185	-0.00023128	NaN	29.082	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136970			9733	5669	5421	5421							0.03868261191814781
FRVKDVFSAF	10	Unmodified	_FRVKDVFSAF_					0	0	0			REV__ENST00000515599.1_1_5:146086275-146086944:-|nuORF	REV__ENST00000515599.1_1_5:146086275-146086944:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.21966552734375	3	405.888874	1214.64479	-0.32541	-0.00013208	1.0835	0.00043976	0.75805	0.00030768	406.2247305719997	28.49	0.19558	28.491	28.41	28.606	0.0004673					10	6	2	0	0	0	0.32051	1	4976	4976		0.69767	0	1	54161	+		9734	21846	5422	5422	12777	12777					0.04605693777034503
FRVPRAHVR	9	Unmodified	_FRVPRAHVR_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.3413696289062	2	569.341241	1136.66793	0.091841	5.2289E-05	-0.13182	-7.5053E-05	-0.039983	-2.2764E-05	569.3414089981766	16.179	0.4301	16.179	15.947	16.377	0					29	14	3	0	0	0	0.33018	1	1253	1253		4.3292	1.334	1	46688	+		9735	16663	5423	5423	12778	12778					0.10506177405022754
FRVPRAHVR	9	Unmodified	_FRVPRAHVR_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.341241	1136.66793	0.091841	5.2289E-05	-0.13182	-7.5053E-05	-0.039983	-2.2764E-05	569.3414089981766	16.179	0.4301	16.179	15.947	16.377	0	0.033846	9.8152E-05	NaN	4.3292	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46688	+		9736	16663	5423	5423							0.10506177405022754
FRVPRAHVR	9	Unmodified	_FRVPRAHVR_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	569.341241	1136.66793	0.16208	9.2279E-05	-0.47234	-0.00026892	-0.31026	-0.00017664	569.341118517369	16.258	0.49718	16.144	15.95	16.448	-0.11434	-0.0013678	-0.00028959	NaN	4.3292	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53497	+		9737	16663	5423	5423							0.10506177405022754
FRVPRAHVR	9	Unmodified	_FRVPRAHVR_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	569.341241	1136.66793	0.13912	7.9207E-05	-0.01756	-9.9974E-06	0.12156	6.9209E-05	569.341377278963	16.175	0.3222	16.113	15.943	16.266	-0.062532	-0.032479	0.00022826	NaN	4.3292	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58619	+		9738	16663	5423	5423							0.10506177405022754
FRVVKLNEVI	10	Unmodified	_FRVVKLNEVI_					0	0	0		ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000168710|O43865-2|AHCYL1;ENST00000481423.1_1_1:110560194-110562192:+|nuORF	ENSG00000168710|ENST00000369799|AHCYL1	ENSG00000168710|ENST00000369799|AHCYL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9070129394531	3	406.251924	1215.73394	0.20049	8.145E-05	-0.034434	-1.3989E-05	0.16606	6.7461E-05	406.25187670356473	36.13	0.40166	36.216	35.898	36.3	0.086246					25	14	2	0	0	0	0.32068	1	7254	7254		1.7423	0	1	242650			9739	6295	5424	5424	12779	12779					0.13470528736570486
FRVWLTHGV	9	Unmodified	_FRVWLTHGV_					0	0	0			REV__CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant	REV__CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7998657226562	2	557.811451	1113.60835	-0.027194	-1.5169E-05	3.4263	0.0019112	3.3991	0.0018961	558.3140711455969	13.493	0.35104	13.493	13.336	13.687	0					14	11	2	0	0	0	0.26257	1	476	476		0.52476	0.12405	1	43871	+		9740	13290	5425	5425	12780	12780					0.05608861670998522
FRVWLTHGV	9	Unmodified	_FRVWLTHGV_					0	0	0			REV__CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant	REV__CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	557.811451	1113.60835	-0.032671	-1.8224E-05	3.7146	0.0020721	3.6819	0.0020538	557.8140153684853	13.556	0.27103	13.457	13.337	13.608	-0.09929	-0.024066	0.00014422	NaN	0.52476	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38455	+		9741	13290	5425	5425							0.05608861670998522
FRWMRLRI	8	Unmodified	_FRWMRLRI_					0	0	0		ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3438110351562	2	589.342395	1176.67024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.25	1	118.25	117.75	118.75	0								0	0	0	0.38004	1	30553	30553		0.69038	0.16561	1				9742	5001	5426	5426	12781	12781					0.088968898184703
FRWRVNFIRHL	11	Unmodified	_FRWRVNFIRHL_					0	0	0		nc|ENSG00000162714|Q96IT1-2|ZNF496;ENSG00000162714|ENST00000682384|ZNF496	nc|ENSG00000162714|Q96IT1-2|ZNF496	nc|ENSG00000162714|Q96IT1-2|ZNF496	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.798095703125	3	515.29675	1542.86842	0.43852	0.00022597	0.17762	9.1525E-05	0.61614	0.00031749	515.2975087321394	57.319	1.3385	57.319	56.849	58.187	0					103	48	4	0	0	0	0.33236	1	13897	13897		4.4062	1.9714	1	448050			9743	12793	5427	5427	12782	12782					0.11870027001828021
FRWRVNFIRHL	11	Unmodified	_FRWRVNFIRHL_					0	0	0		nc|ENSG00000162714|Q96IT1-2|ZNF496;ENSG00000162714|ENST00000682384|ZNF496	nc|ENSG00000162714|Q96IT1-2|ZNF496	nc|ENSG00000162714|Q96IT1-2|ZNF496	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	515.29675	1542.86842	0.10671	5.4989E-05	-0.79903	-0.00041174	-0.69232	-0.00035675	515.6308636472218	57.311	0.79331	57.294	56.922	57.716	-0.0172	0.05599	-8.4293E-05	NaN	4.4062	58	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	584630			9744	12793	5427	5427							0.11870027001828021
FRWTQHLP	8	Unmodified	_FRWTQHLP_					0	0	0			REV__ENSG00000182749|ENST00000675840|PAQR7	REV__ENSG00000182749|ENST00000675840|PAQR7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3126831054688	2	542.787976	1083.5614	0.1172	6.3615E-05	-0.15603	-8.4691E-05	-0.038828	-2.1076E-05	542.7874375968174	12.15	0.11927	12.15	12.1	12.219	0					7	5	2	0	0	0	0.34437	1	46	46		0.69038	0	1	19104	+		9745	18214	5428	5428	12783	12783					0.02296002119851437
FRWTQHLP	8	Unmodified	_FRWTQHLP_					0	0	0			REV__ENSG00000182749|ENST00000675840|PAQR7	REV__ENSG00000182749|ENST00000675840|PAQR7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	542.787976	1083.5614	0.27159	0.00014741	-0.82545	-0.00044805	-0.55386	-0.00030063	542.7875668485142	12.16	0.075731	12.064	12.018	12.094	-0.096607	-0.034269	-8.0951E-05	NaN	0.69038	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12636	+		9746	18214	5428	5428							0.02296002119851437
FRWTQHLP	8	Unmodified	_FRWTQHLP_					0	0	0			REV__ENSG00000182749|ENST00000675840|PAQR7	REV__ENSG00000182749|ENST00000675840|PAQR7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	542.787976	1083.5614	0.13345	7.2436E-05	-0.89218	-0.00048426	-0.75873	-0.00041183	542.7876465021702	12.148	0.10777	12.08	12.032	12.14	-0.06806	-0.017572	-0.00015339	NaN	0.69038	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14607	+		9747	18214	5428	5428							0.02296002119851437
FSAAIQWSTLG	11	Unmodified	_FSAAIQWSTLG_					0	0	0			REV__ENST00000420027.3_1_20:48697949-48698015:-|nuORF	REV__ENST00000420027.3_1_20:48697949-48698015:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.804931640625	2	590.803488	1179.59242	0.50118	0.0002961	1.3676	0.00080797	1.8688	0.0011041	590.8045816501052	90.129	0.51652	90.13	89.875	90.391	0.00039673					70	40	2	0	0	0	0.38753	1	23883	23883		12.873	0.63195	1	194810	+		9748	20848	5429	5429	12784	12784					0.009811106434199246
FSAAIQWSTLG	11	Unmodified	_FSAAIQWSTLG_					0	0	0			REV__ENST00000420027.3_1_20:48697949-48698015:-|nuORF	REV__ENST00000420027.3_1_20:48697949-48698015:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	590.803488	1179.59242	0.46061	0.00027213	1.4757	0.00087187	1.9363	0.001144	590.8047051076114	90.068	0.54332	90.068	89.92	90.463	0	-0.025342	0.0001007	NaN	12.873	66	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103500	+		9749	20848	5429	5429							0.009811106434199246
FSAAIQWSTLG	11	Unmodified	_FSAAIQWSTLG_					0	0	0			REV__ENST00000420027.3_1_20:48697949-48698015:-|nuORF	REV__ENST00000420027.3_1_20:48697949-48698015:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	590.803488	1179.59242	0.43438	0.00025663	1.3572	0.00080183	1.7916	0.0010585	590.8047010723678	89.992	0.54647	90.083	89.872	90.419	0.090675	-0.010904	-3.9371E-05	NaN	12.873	80	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174910	+		9750	20848	5429	5429							0.009811106434199246
FSAAIQWSTLG	11	Unmodified	_FSAAIQWSTLG_					0	0	0			REV__ENST00000420027.3_1_20:48697949-48698015:-|nuORF	REV__ENST00000420027.3_1_20:48697949-48698015:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	590.803488	1179.59242	0.50118	0.0002961	1.3676	0.00080797	1.8688	0.0011041	590.8045816501052	90.129	0.51652	90.13	89.875	90.391	0.00039673	0.036247	-2.7096E-05	NaN	12.873	70	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194810	+		9751	20848	5429	5429							0.009811106434199246
FSAEGGRGVRC	11	Unmodified	_FSAEGGRGVRC_					0	0	0		ENST00000378536.4_1_1:2240511-2240694:+|nuORF	ENST00000378536.4_1_1:2240511-2240694:+|nuORF	ENST00000378536.4_1_1:2240511-2240694:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.7750854492188	2	569.774739	1137.53493	0.52263	0.00029778	0.68297	0.00038914	1.2056	0.00068692	569.7751055647556	83.324	0.89115	83.397	83.003	83.894	0.07309					114	34	4	0	0	0	0.33189	1	21776	21776		19.362	2.249	1	1343900			9752	9959	5430	5430	12785	12785					-0.02834054833783739
FSARDNYF	8	Unmodified	_FSARDNYF_					0	0	0			REV__ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant;REV__ENSG00000123104|ENST00000381340|ITPR2	REV__ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7933349609375	2	510.232699	1018.45084	0.18001	9.1845E-05	-3.8879	-0.0019837	-3.7079	-0.0018919	510.2315776697704	28.722	0.1564	28.718	28.629	28.785	-0.0042572					7	4	2	0	0	0	0.3366	1	5033	5033		18.135	5.6034	1	45125	+		9753	16519;15178	5431	5431	12786	12786					-0.05764262659056385
FSASNGLTR	9	Unmodified	_FSASNGLTR_					0	0	0		nc|ENSG00000235109|Q96LW9-2|ZSCAN31;ENSG00000235109|ENST00000344279|ZSCAN31	nc|ENSG00000235109|Q96LW9-2|ZSCAN31	nc|ENSG00000235109|Q96LW9-2|ZSCAN31	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.2484436035156	2	476.745973	951.477394	0.20808	9.9201E-05	-0.13372	-6.3749E-05	0.074363	3.5452E-05	476.7461004707814	19.433	0.64378	19.377	19.144	19.788	-0.055693					32	22	2	0	0	0	0.26031	1	2265	2265		3.5965	1.019	1	59841			9754	8492	5432	5432	12787	12787					-0.000285737677245379
FSAWLSPPL	9	Unmodified	_FSAWLSPPL_					0	0	0			REV__chr2:34696396-34713579|307|49.86|0.04|10.24|+|0|TE_info:HERVH-int,HERVH-int_dup499,ERV1,LTR,donor,+,34694923,34696396|None,LINC01320|1	REV__chr2:34696396-34713579|307|49.86|0.04|10.24|+|0|TE_info:HERVH-int,HERVH-int_dup499,ERV1,LTR,donor,+,34694923,34696396|None,LINC01320|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.787841796875	2	509.273835	1016.53312	0.56517	0.00028783	-2.0358	-0.0010368	-1.4706	-0.00074893	509.2717462164073	53.919	0.46412	53.919	53.698	54.162	0					25	16	3	0	0	0	0.21905	1	12823	12823		7.2892	0	1	176940	+		9755	13190	5433	5433	12788	12788					0.025512594198971783
FSCCFYLIF	9	Unmodified	_FSCCFYLIF_					0	0	0		ENST00000373075.6_1_1:37959208-37959391:-|nuORF	ENST00000373075.6_1_1:37959208-37959391:-|nuORF	ENST00000373075.6_1_1:37959208-37959391:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7575073242188	2	571.756107	1141.49766	0.24138	0.00013801	1.1663	0.00066682	1.4076	0.00080482	571.756678934522	31.608	0.38313	31.649	31.419	31.802	0.040991					27	13	3	0	0	0	0.20344	1	5916	5916		23.148	3.8914	1	511680			9756	9855	5434	5434	12789	12789					-0.06742862423766383
FSCEGDCYFA	10	Unmodified	_FSCEGDCYFA_					0	0	0			REV__ENSG00000112175|ENST00000370830|BMP5	REV__ENSG00000112175|ENST00000370830|BMP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7953491210938	2	571.201892	1140.38923	0.45524	0.00026003	-0.39186	-0.00022383	0.063379	3.6202E-05	571.2016341977298	56.913	0.35855	56.894	56.809	57.168	-0.019081					16	12	2	0	0	0	0.318	1	13773	13773		7.2892	2.96	1	262400	+		9757	14760	5435	5435	12790	12790					-0.17534698464851317
FSCLWSYSY	9	Unmodified	_FSCLWSYSY_					0	0	0			REV__ENST00000284425.6_1_17:67087362-67092889:-|nuORF	REV__ENST00000284425.6_1_17:67087362-67092889:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.811279296875	2	578.244418	1154.47428	0.54171	0.00031324	-0.88848	-0.00051376	-0.34677	-0.00020052	578.2440044670803	47.289	0.55407	47.289	47.024	47.578	0					43	19	3	0	0	0	0.19839	1	10740	10740		15.847	0	1	738350	+		9758	19729	5436	5436	12791	12791					-0.09677584936753192
FSCLWSYSY	9	Unmodified	_FSCLWSYSY_					0	0	0			REV__ENST00000284425.6_1_17:67087362-67092889:-|nuORF	REV__ENST00000284425.6_1_17:67087362-67092889:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.8115844726562	2	578.244418	1154.47428	0.29122	0.00016839	-0.63314	-0.00036611	-0.34192	-0.00019771	578.2441305932624	47.092	0.56034	47.145	46.901	47.461	0.052574					44	20	3	0	0	0	0.19839	1	10670	10670		15.847	0	1	626610	+		9759	19729	5436	5436	12792	12792					-0.09677584936753192
FSCLYCTLL	9	Carbamidomethyl (C)	_FSC(Carbamidomethyl (C))LYCTLL_	FSC(0.907)LYC(0.093)TLL		FSC(9.9)LYC(-9.9)TLL		0	1	0			REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF	REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.264404296875	2	560.264296	1118.51404	0.38998	0.00021849	-0.61952	-0.00034709	-0.22954	-0.0001286	560.2641903152165	79.688	1.2311	79.749	79.394	80.625	0.061417					139	46	6	0	0	0	0.017871	1	20663	20663		67.344	16.489	2	6378500	+		9760	21379	5437	5437	12793	12793	32				-0.04047781257668248
FSCLYCTLL	9	Carbamidomethyl (C)	_FSC(Carbamidomethyl (C))LYCTLL_	FSC(0.907)LYC(0.093)TLL		FSC(9.9)LYC(-9.9)TLL		0	1	0			REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF	REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2643432617188	2	560.264296	1118.51404	0.31607	0.00017708	-0.52902	-0.00029639	-0.21295	-0.00011931	560.2642120319732	79.776	1.2319	79.747	79.418	80.65	-0.028931					129	44	5	0	0	0	0.017871	1	20702	20702		67.344	16.489	2	6211200	+		9761	21379	5437	5437	12794	12794	32				-0.04047781257668248
FSCLYCTLL	9	Carbamidomethyl (C)	_FSC(Carbamidomethyl (C))LYCTLL_					0	1	0			REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF	REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.264296	1118.51404	0.31079	0.00017412	-0.43965	-0.00024632	-0.12886	-7.2195E-05	560.2642345069818	79.726	0.88144	79.726	79.441	80.322	0	-0.014323	7.5218E-05	NaN	67.344	132	32	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5876500	+		9762	21379	5437	5437			32				-0.04047781257668248
FSCLYCTLL	9	Carbamidomethyl (C)	_FSC(Carbamidomethyl (C))LYCTLL_					0	1	0			REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF	REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.264296	1118.51404	0.38998	0.00021849	-0.61952	-0.00034709	-0.22954	-0.0001286	560.2641903152165	79.688	1.2311	79.749	79.394	80.625	0.061417	0.0084829	-0.00012633	NaN	67.344	139	46	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6378500	+		9763	21379	5437	5437			32				-0.04047781257668248
FSCLYCTLL	9	Carbamidomethyl (C)	_FSC(Carbamidomethyl (C))LYCTLL_					0	1	0			REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF	REV__ENST00000473156.5_1_19:55112802-55113006:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	560.264296	1118.51404	0.31607	0.00017708	-0.52902	-0.00029639	-0.21295	-0.00011931	560.2642120319732	79.776	1.2319	79.747	79.418	80.65	-0.028931	0.00584	-2.4929E-05	NaN	67.344	129	44	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6211200	+		9764	21379	5437	5437			32				-0.04047781257668248
FSCQYSKFT	9	Unmodified	_FSCQYSKFT_					0	0	0		ENST00000588460.5_1_17:74733662-74733794:+|nuORF	ENST00000588460.5_1_17:74733662-74733794:+|nuORF	ENST00000588460.5_1_17:74733662-74733794:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7681274414062	2	555.749867	1109.48518	0.57408	0.00031904	-0.78338	-0.00043536	-0.2093	-0.00011632	555.749323828907	47.737	0.57971	47.737	47.244	47.823	0					32	20	2	0	0	0	0.26612	1	10881	10881		13.906	1.3745	1	310630			9765	12147	5438	5438	12795	12795					-0.065181825624677
FSCQYSKFT	9	Unmodified	_FSCQYSKFT_					0	0	0		ENST00000588460.5_1_17:74733662-74733794:+|nuORF	ENST00000588460.5_1_17:74733662-74733794:+|nuORF	ENST00000588460.5_1_17:74733662-74733794:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.76806640625	2	555.749867	1109.48518	0.68261	0.00037936	-0.69024	-0.0003836	-0.0076295	-4.2401E-06	555.7492303467005	47.617	0.58332	47.661	47.214	47.797	0.04332					31	21	2	0	0	0	0.26612	1	10857	10857		13.906	1.3745	1	276300			9766	12147	5438	5438	12796	12796					-0.065181825624677
FSCQYSKFT	9	Unmodified	_FSCQYSKFT_					0	0	0		ENST00000588460.5_1_17:74733662-74733794:+|nuORF	ENST00000588460.5_1_17:74733662-74733794:+|nuORF	ENST00000588460.5_1_17:74733662-74733794:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	555.749867	1109.48518	0.46312	0.00025738	-0.60715	-0.00033742	-0.14403	-8.0043E-05	555.7492590754357	47.572	0.477	47.62	47.295	47.772	0.047523	-0.05267	0.00011406	NaN	13.906	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165160			9767	12147	5438	5438							-0.065181825624677
FSCRDYNW	8	Unmodified	_FSCRDYNW_					0	0	0		ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	ENST00000427574.6_1_11:76157982-76207767:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2593994140625	2	545.724184	1089.43381	0.63367	0.00034581	1.2906	0.00070431	1.9243	0.0010501	546.22737637369	70.432	0.5591	70.407	70.214	70.773	-0.024864					29	19	3	0	0	0	0.34131	1	17838	17838		4.3292	0	1	146520			9768	10435	5439	5439	12797	12797					-0.107325065365103
FSCWNHIS	8	Unmodified	_FSCWNHIS_					0	0	0			REV__ENST00000261574.9_1_13:98674841-98674961:+|nuORF	REV__ENST00000261574.9_1_13:98674841-98674961:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2922058105469	2	497.215995	992.417436	0.42413	0.00021088	0.4514	0.00022444	0.87553	0.00043533	497.2162482022275	66.141	0.46004	66.127	65.919	66.379	-0.013596					22	16	2	0	0	0	0.34247	1	16604	16604		8.5933	2.2392	1	168950	+		9769	19598	5440	5440	12798	12798					-0.0790758770259572
FSDAVLVAQL	10	Unmodified	_FSDAVLVAQL_					0	0	0			REV__ENST00000491144.5_1_3:183853173-183855624:+|nuORF	REV__ENST00000491144.5_1_3:183853173-183855624:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.282470703125	2	531.795132	1061.57571	0.63714	0.00033883	1.1643	0.00061918	1.8015	0.00095801	532.2968616861997	49.397	0.65784	49.397	49.135	49.793	0					54	23	3	0	0	0	0.30586	1	11478	11478		13.906	0	1	708720	+		9770	16280	5441	5441	12799	12799					0.04738609757487211
FSDGAVSLHT	10	Unmodified	_FSDGAVSLHT_					0	0	0		ENST00000467138.1_1_9:133576229-133576352:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	ENST00000467138.1_1_9:133576229-133576352:+|nuORF	ENST00000467138.1_1_9:133576229-133576352:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.766845703125	2	517.251089	1032.48762	0.32186	0.00016648	0.95725	0.00049514	1.2791	0.00066162	517.7532724680276	38.105	0.56538	38.105	37.895	38.46	0					30	19	2	0	0	0	0.27337	1	7933	7933		22.736	5.6234	1	277430			9771	3501	5442	5442	12800	12800					-0.0273201083314234
FSDHLWFVVKE	11	Unmodified	_FSDHLWFVVKE_					0	0	0			REV__ENSG00000130382|ENST00000252674|MLLT1	REV__ENSG00000130382|ENST00000252674|MLLT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.27691650390625	3	469.574955	1405.70304	0.00092404	4.339E-07	0.45398	0.00021318	0.4549	0.00021361	469.9094080162347	41.435	0.37874	41.525	41.188	41.566	0.090248					20	13	2	0	0	0	0.32987	1	8903	8903		10.527	1.7757	1	373840	+		9772	15453	5443	5443	12801	12801					0.016413306316280796
FSDHLWFVVKE	11	Unmodified	_FSDHLWFVVKE_					0	0	0			REV__ENSG00000130382|ENST00000252674|MLLT1	REV__ENSG00000130382|ENST00000252674|MLLT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	469.574955	1405.70304	0.16956	7.9623E-05	-0.13914	-6.5338E-05	0.030423	1.4286E-05	469.5749915175525	41.214	0.3553	41.31	41.093	41.448	0.096626	-0.10721	-0.00052768	NaN	10.527	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239660	+		9773	15453	5443	5443							0.016413306316280796
FSDQFPLPLK	10	Unmodified	_FSDQFPLPLK_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.324462890625	2	596.324057	1190.63356	0.34748	0.00020721	0.27692	0.00016513	0.6244	0.00037235	596.3240987711397	64.946	0.7536	64.946	64.591	65.345	0					53	27	3	0	0	0	0.0017096	1	16190	16190		111.31	89.772	1	439350			9774	1219	5444	5444	12802	12802					0.0458687168288634
FSDQFPLPLK	10	Unmodified	_FSDQFPLPLK_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.2584228515625	2	596.324057	1190.63356	0.47127	0.00028103	-0.018759	-1.1186E-05	0.45251	0.00026985	596.3239842642012	64.803	0.69247	64.895	64.582	65.274	0.09288					50	25	2	0	0	0	0.071498	1	16092	16092		73.196	60.956	1	408930			9775	1219	5444	5444	12803	12803					0.0458687168288634
FSDQFPLPLK	10	Unmodified	_FSDQFPLPLK_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.258544921875	2	596.324057	1190.63356	0.23621	0.00014086	0.42075	0.0002509	0.65696	0.00039176	596.3242492458664	64.96	0.87681	64.949	64.521	65.398	-0.011337					61	31	3	0	0	0	0.00014312	1	16153	16153		135.72	112.98	1	302470			9776	1219	5444	5444	12804	12804					0.0458687168288634
FSDTSTKTLY	10	Unmodified	_FSDTSTKTLY_					0	0	0		ENST00000507907.1_1_6:146747775-146755929:+|nuORF;ENST00000492807.6_1_6:146720717-146755929:+|nuORF;GRM1|p.A1134Nfs*7|1|0.14|ENSG00000152822|chr6:146434610-146434611|-/AATCATCC|frameshift_variant;ENSG00000152822|ENST00000282753|GRM1	ENST00000507907.1_1_6:146747775-146755929:+|nuORF	ENST00000507907.1_1_6:146747775-146755929:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.8107299804688	2	581.784961	1161.55537	0.56416	0.00032822	0.096283	5.6016E-05	0.66044	0.00038423	581.7854513690656	54.532	0.45163	54.595	54.353	54.805	0.063202					39	16	4	0	0	0	0.31039	1	12901	12901		18.146	1.0335	1	281360			9777	5044	5445	5445	12805	12805					-0.01894605692996265
FSDWFHHIF	9	Unmodified	_FSDWFHHIF_					0	0	0		nc|ENSG00000234616|O75564|JRK;ENSG00000234616|ENST00000612905|JRK	nc|ENSG00000234616|O75564|JRK	nc|ENSG00000234616|O75564|JRK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.2850341796875	2	618.285266	1234.55598	0.28403	0.00017561	0.12636	7.8128E-05	0.41039	0.00025374	618.2849105558679	57.625	0.85511	57.625	57.273	58.128	0					87	30	4	0	0	0	0.21303	2	13889	13889;13939		21.747	5.8995	1	1503000			9778	8487	5446	5446	12806;12807	12806					-0.051917214626428176
FSDWFHHIF	9	Unmodified	_FSDWFHHIF_					0	0	0		nc|ENSG00000234616|O75564|JRK;ENSG00000234616|ENST00000612905|JRK	nc|ENSG00000234616|O75564|JRK	nc|ENSG00000234616|O75564|JRK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.2847290039062	2	618.285266	1234.55598	0.15495	9.5804E-05	0.18497	0.00011436	0.33992	0.00021017	618.284998672329	57.397	0.89269	57.482	57.132	58.025	0.085617					91	32	4	0	0	0	0.24581	2	13815	13815;13861		16.942	1.0951	1	2237700			9779	8487	5446	5446	12808;12809	12808					-0.051917214626428176
FSDWFHHIF	9	Unmodified	_FSDWFHHIF_					0	0	0		nc|ENSG00000234616|O75564|JRK;ENSG00000234616|ENST00000612905|JRK	nc|ENSG00000234616|O75564|JRK	nc|ENSG00000234616|O75564|JRK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.8060302734375	2	618.285266	1234.55598	0.091805	5.6762E-05	0.18448	0.00011406	0.27628	0.00017082	618.2850419756514	57.671	0.98926	57.653	57.229	58.218	-0.0172					111	36	6	0	0	0	0.25066	1	13878	13878		11.64	0.81637	1	2034100			9780	8487	5446	5446	12810	12810					-0.051917214626428176
FSEAFLLQI	9	Unmodified	_FSEAFLLQI_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.8115234375	2	534.292225	1066.5699	0.7512	0.00040136	-0.45396	-0.00024255	0.29724	0.00015881	534.2918259742526	48.006	0.78463	48.006	47.797	48.582	0					51	27	3	0	0	0	0.14076	1	11118	11118		32.305	13.049	1	3258500			9781	4239	5447	5447	12811	12811					0.039275112458199146
FSEAFLLQI	9	Unmodified	_FSEAFLLQI_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.8110961914062	2	534.292225	1066.5699	0.69198	0.00036972	-1.4778	-0.00078957	-0.7858	-0.00041985	534.2910292493916	47.931	1.0779	47.974	47.455	48.533	0.04332					65	40	2	0	0	0	0.11461	1	11072	11072		36.127	4.8587	1	4208900			9782	4239	5447	5447	12812	12812					0.039275112458199146
FSEGGERLL	9	Unmodified	_FSEGGERLL_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2738037109375	2	504.261456	1006.50836	0.42932	0.00021649	1.5396	0.00077635	1.9689	0.00099284	504.2624460135721	43.071	0.48225	43.156	42.951	43.433	0.085197					23	17	2	0	0	0	0.18208	1	9453	9453		26.268	0.86883	1	238130			9783	7546	5448	5448	12813	12813					0.00536579546530902
FSEKSNTF	8	Unmodified	_FSEKSNTF_					0	0	0			REV__ENST00000399949.6_1_13:24863209-24863245:+|nuORF	REV__ENST00000399949.6_1_13:24863209-24863245:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.80047607421875	2	480.227082	958.439611	0.36966	0.00017752	-2.1544	-0.0010346	-1.7847	-0.00085708	480.2260255239748	51.3	0.38829	51.31	51.145	51.533	0.0095634					19	14	2	0	0	0	0.34131	1	11955	11955		4.3292	0	1	220970	+		9784	20698	5449	5449	12814	12814					-0.04127084753179133
FSEMLAASFSI	11	Unmodified	_FSEMLAASFSI_					0	0	0		ENSG00000091137|ENST00000644269|SLC26A4	ENSG00000091137|ENST00000644269|SLC26A4	ENSG00000091137|ENST00000644269|SLC26A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.811279296875	2	601.791732	1201.56891	0.40201	0.00024193	-1.231	-0.00074079	-0.82896	-0.00049886	601.790399287905	69.774	1.8176	69.774	68.951	70.768	0					168	65	3	0	0	0	0.32017	1	17600	17600		20.415	1.1575	1	309430			9785	1399	5450	5450	12815	12815					-0.023810711853911926
FSERLGIGE	9	Unmodified	_FSERLGIGE_					0	0	0			REV__ENSG00000185219|ENST00000396077|ZNF445	REV__ENSG00000185219|ENST00000396077|ZNF445	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2740478515625	2	504.261456	1006.50836	0.42932	0.00021649	1.5396	0.00077635	1.9689	0.00099284	504.2624460135721	43.071	0.48225	43.156	42.951	43.433	0.085197					23	17	2	0	0	0	0.23767	1	9502	9502		18.146	0	1	238130	+		9786	18363	5451	5451	12816	12816					0.00536579546530902
FSESKHSKFL	10	Unmodified	_FSESKHSKFL_					0	0	0			REV__ENST00000508886.1_1_4:16168395-16175964:-|nuORF	REV__ENST00000508886.1_1_4:16168395-16175964:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.7681274414062	2	605.316763	1208.61897	0.53953	0.00032659	1.1093	0.00067149	1.6489	0.00099808	605.3174832965825	57.38	0.47623	57.465	57.21	57.686	0.085621					28	16	2	0	0	0	0.31629	1	13840	13840		10.074	0	1	281560	+		9787	21781	5452	5452	12817	12817					0.023007995347825272
FSETSINFF	9	Unmodified	_FSETSINFF_					0	0	0		ENST00000489825.5_1_1:224612352-224621495:-|nuORF;nc|ENSG00000162923|Q9H7D7-3|WDR26	ENST00000489825.5_1_1:224612352-224621495:-|nuORF	ENST00000489825.5_1_1:224612352-224621495:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.801025390625	2	546.25584	1090.49713	0.78906	0.00043103	-0.47685	-0.00026048	0.31221	0.00017055	546.2555567868787	77.632	0.4558	77.632	77.366	77.822	0					26	16	2	0	0	0	0.24311	1	20005	20005		16.942	0	1	157890			9788	11152	5453	5453	12818	12818					-0.044502425476366625
FSETSINFF	9	Unmodified	_FSETSINFF_					0	0	0		ENST00000489825.5_1_1:224612352-224621495:-|nuORF;nc|ENSG00000162923|Q9H7D7-3|WDR26	ENST00000489825.5_1_1:224612352-224621495:-|nuORF	ENST00000489825.5_1_1:224612352-224621495:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	546.25584	1090.49713	0.92231	0.00050382	-0.52464	-0.00028659	0.39767	0.00021723	546.2555940088893	77.614	0.6339	77.67	77.233	77.867	0.055412	0.025577	0.00012726	NaN	16.942	30	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128280			9789	11152	5453	5453							-0.044502425476366625
FSEVYGHR	8	Unmodified	_FSEVYGHR_					0	0	0		nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.78765869140625	2	497.740691	993.466829	0.012103	6.024E-06	1.2438	0.0006191	1.2559	0.00062513	497.74070784427755	34.366	0.31335	34.437	34.214	34.527	0.071545					16	10	2	0	0	0	0.34092	1	6720	6720		13.508	0.97634	1	80777			9790	5713	5454	5454	12819	12819					-0.030165564221420027
FSFDFFVL	8	Unmodified	_FSFDFFVL_					0	0	0		ENST00000282120.6_1_2:85549729-85549831:-|nuORF	ENST00000282120.6_1_2:85549729-85549831:-|nuORF	ENST00000282120.6_1_2:85549729-85549831:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2544250488281	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.77	1	118.75	118.25	119.25	-0.024147								0	0	0	0.37664	1	30688	30688		2.5775	0.27475	1				9791	9124	5455	5455	12820	12820					-0.01375831845700759
FSFDLLGNPL	10	Unmodified	_FSFDLLGNPL_					0	0	0		nc|ENSG00000293135|Q8WWF6|DNAJB3	nc|ENSG00000293135|Q8WWF6|DNAJB3	nc|ENSG00000293135|Q8WWF6|DNAJB3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7788696289062	2	561.795132	1121.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.109	1	92.11	91.61	92.61	0.00046539								0	0	0	0.35611	1	24479	24479		12.241	1.4167	1				9792	13018	5456	5456	12821	12821					0.019786097574751693
FSFDLSPLTK	10	Unmodified	_FSFDLSPLTK_					0	0	0		IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3687133789062	2	577.808239	1153.60193	0.41186	0.00023798	-0.0187	-1.0805E-05	0.39316	0.00022717	577.8081542107593	69.094	0.4373	69.166	68.934	69.372	0.071945					25	15	2	0	0	0	0.31538	1	17474	17474		5.7834	0	1	246170			9793	7927	5457	5457	12822	12822					0.03126878928947008
FSFFFFDLF	9	Unmodified	_FSFFFFDLF_					0	0	0			REV__ENST00000382159.7_1_19:2514150-2514228:-|nuORF	REV__ENST00000382159.7_1_19:2514150-2514228:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.547119140625	3	406.195304	1215.56408	-0.18307	-7.4361E-05	-1.2932	-0.00052528	-1.4762	-0.00059964	406.19485255478395	33.247	0.49946	33.301	33.146	33.645	0.054371					21	17	2	0	0	0	0.25417	1	6472	6472		2.7352	0.82882	1	136780	+		9794	20568	5458	5458	12823	12823					-0.035075872658808294
FSFGAFCMLL	10	Unmodified	_FSFGAFCMLL_					0	0	0			REV__nc|ENSG00000164037|Q4ZJI4-2|SLC9B1	REV__nc|ENSG00000164037|Q4ZJI4-2|SLC9B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.7416381835938	2	568.269381	1134.52421	0.50183	0.00028517	1.6693	0.0009486	2.1711	0.0012338	568.2704754217915	48.106	0.6196	48.106	47.987	48.606	0					23	17	2	0	0	0	0.27772	1	11012	11012		26.884	3.7352	1	744160	+		9795	17117	5459	5459	12824	12824					-0.03767173532446577
FSFIDQKPAQ	10	Unmodified	_FSFIDQKPAQ_					0	0	0			REV__ENSG00000183318|ENST00000689094|SPDYE4	REV__ENSG00000183318|ENST00000689094|SPDYE4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.3191528320312	2	590.803488	1179.59242	0.4266	0.00025204	0.1247	7.3675E-05	0.5513	0.00032571	590.8031346392435	58.717	0.87453	58.808	58.56	59.434	0.091305					64	30	3	0	0	0	0.3144	1	14186	14186		13.042	0.80181	1	500410	+		9796	18256	5460	5460	12825	12825					0.009811106434199246
FSFITGLSNL	10	Unmodified	_FSFITGLSNL_					0	0	0			REV__ENSG00000224051|ENST00000343938|CPTP	REV__ENSG00000224051|ENST00000343938|CPTP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3126831054688	2	549.795132	1097.57571	0.2768	0.00015219	3.9419	0.0021672	4.2187	0.0023194	550.2989527786107	76.331	0.44376	76.385	76.25	76.694	0.053413					22	15	2	0	0	0	0.3258	1	19686	19686		17.113	1.2657	1	132930	+		9797	19109	5461	5461	12826	12826					0.03082609757461796
FSFKAFSPV	9	Unmodified	_FSFKAFSPV_					0	0	0		nc|ENSG00000005189|Q96IC2-2|REXO5;ENSG00000005189|ENST00000261377|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7880859375	2	515.273835	1028.53312	0.22229	0.00011454	1.2842	0.00066172	1.5065	0.00077627	515.2745525018349	59.258	0.16962	59.349	59.238	59.408	0.091301					9	5	3	0	0	0	0.20626	1	14402	14402		22.736	0.98964	1	176680			9798	328	5462	5462	12827	12827					0.01999259419903865
FSFLRFHPL	9	Unmodified	_FSFLRFHPL_					0	0	0			REV__ENST00000570308.5_1_16:55539636-55539948:+|nuORF	REV__ENST00000570308.5_1_16:55539636-55539948:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3037109375	2	582.321651	1162.62875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.728	1	17.728	17.228	18.228	0								0	0	0	0.26334	1	1717	1717		2.0598	0.57785	1		+		9799	22412	5463	5463	12828	12828					0.053940323308097504
FSFNQLLL	8	Unmodified	_FSFNQLLL_					0	0	0			REV__ENST00000460410.5_1_3:112730241-112732223:-|nuORF	REV__ENST00000460410.5_1_3:112730241-112732223:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.8056945800781	2	491.273835	980.533118	0.58274	0.00028628	-1.3124	-0.00064473	-0.72963	-0.00035845	491.27296781315926	53.213	0.36566	53.269	53.013	53.379	0.056255					13	12	2	0	0	0	0.32435	1	12514	12514		23.148	3.7094	1	126670	+		9800	21203	5464	5464	12829	12829					0.04207259419922593
FSFQDFGSL	9	Unmodified	_FSFQDFGSL_					0	0	0		ENST00000561157.5_1_15:83205554-83205662:-|nuORF	ENST00000561157.5_1_15:83205554-83205662:-|nuORF	ENST00000561157.5_1_15:83205554-83205662:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8001708984375	2	524.242732	1046.47091	0.57652	0.00030223	1.7921	0.00093949	2.3686	0.0012417	524.2435426158503	71.999	0.37788	71.972	71.793	72.171	-0.027275					23	13	3	0	0	0	0.1939	1	18309	18309		24.021	11.78	1	170290			9801	11910	5465	5465	12830	12830					-0.0504651171909245
FSFRHSNGF	9	Unmodified	_FSFRHSNGF_					0	0	0			REV__ENSG00000165338|ENST00000298068|HECTD2	REV__ENSG00000165338|ENST00000298068|HECTD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2745361328125	2	549.759415	1097.50428	0.41558	0.00022847	-0.3331	-0.00018312	0.08248	4.5344E-05	549.7591482138716	62.876	0.86332	62.876	62.58	63.443	0					74	31	4	0	0	0	0.1669	1	15487	15487		28.487	28.487	1	2310300	+		9802	17229	5466	5466	12831	12831					-0.04057465156529361
FSFRHSNGF	9	Unmodified	_FSFRHSNGF_					0	0	0			REV__ENSG00000165338|ENST00000298068|HECTD2	REV__ENSG00000165338|ENST00000298068|HECTD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3126831054688	2	549.759415	1097.50428	0.30644	0.00016847	0.69699	0.00038318	1.0034	0.00055165	549.7599148376844	76.366	0.95905	76.419	76.189	77.148	0.053413					46	33	2	0	0	0	0.24311	1	19686	19686		16.942	4.4107	1	201810	+		9803	17229	5466	5466	12832	12832					-0.04057465156529361
FSFRHSNGF	9	Unmodified	_FSFRHSNGF_					0	0	0			REV__ENSG00000165338|ENST00000298068|HECTD2	REV__ENSG00000165338|ENST00000298068|HECTD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2747802734375	2	549.759415	1097.50428	0.3908	0.00021485	-0.29343	-0.00016132	0.097373	5.3532E-05	549.7591551776791	62.89	0.83725	62.882	62.597	63.435	-0.0085526					81	30	4	0	0	0	0.17787	2	15524	15476;15524		26.884	26.884	1	2304800	+		9804	17229	5466	5466	12833;12834	12834					-0.04057465156529361
FSFSLLQNWF	10	Unmodified	_FSFSLLQNWF_					0	0	0			REV__ENST00000584977.5_1_18:46917135-46956764:-|nuORF	REV__ENST00000584977.5_1_18:46917135-46956764:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.2353210449219	3	430.21688	1287.62881	-0.24675	-0.00010615	-1.4015	-0.00060297	-1.6483	-0.00070912	430.21760711411747	17.602	0.37054	17.484	17.355	17.726	-0.11739					16	12	2	0	0	0	0.32033	1	1715	1715		4.1895	0	1	26674	+		9805	16088	5467	5467	12835	12835					-0.003500124598531329
FSFTAAAADR	10	Unmodified	_FSFTAAAADR_					0	0	0		nc|ENSG00000158486|Q8TD57-3|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	nc|ENSG00000158486|Q8TD57-3|DNAH3	nc|ENSG00000158486|Q8TD57-3|DNAH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7579345703125	2	528.759081	1055.50361	0.63181	0.00033407	-1.2077	-0.00063859	-0.5759	-0.00030451	528.75811831822	21.022	0.68419	21.022	20.57	21.254	0					38	23	2	0	0	0	0.31681	1	2734	2734		18.373	1.4308	1	76882			9806	12782	5468	5468	12836	12836					-0.02192304596246686
FSFTHIFF	8	Unmodified	_FSFTHIFF_					0	0	0			REV__ENSG00000167359|ENST00000380211|OR51I1	REV__ENSG00000167359|ENST00000380211|OR51I1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7958374023438	2	523.260728	1044.5069	0.4526	0.00023683	-3.4817	-0.0018218	-3.0291	-0.001585	523.2588786543154	32.914	0.51054	32.914	32.692	33.202	0					29	17	3	0	0	0	0.33245	1	6391	6391		13.508	3.3245	1	137530	+		9807	17380	5469	5469	12837	12837					-0.013570097515867019
FSFTHIFF	8	Unmodified	_FSFTHIFF_					0	0	0			REV__ENSG00000167359|ENST00000380211|OR51I1	REV__ENSG00000167359|ENST00000380211|OR51I1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2586669921875	2	523.260728	1044.5069	0.43186	0.00022598	-3.9536	-0.0020688	-3.5217	-0.0018428	523.258724789405	32.873	0.46347	32.928	32.682	33.146	0.054375					27	16	3	0	0	0	0.28861	1	6328	6328		32.117	3.9437	1	227240	+		9808	17380	5469	5469	12838	12838					-0.013570097515867019
FSFWEVMAT	9	Unmodified	_FSFWEVMAT_					0	0	0		ENST00000523232.1_1_8:137528301-137531442:+|nuORF	ENST00000523232.1_1_8:137528301-137531442:+|nuORF	ENST00000523232.1_1_8:137528301-137531442:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7876586914062	2	559.254785	1116.49502	0.21221	0.00011868	-0.67567	-0.00037787	-0.46346	-0.00025919	559.2544966115063	25.202	0.55174	25.202	25.011	25.562	0					32	18	2	0	0	0	0.25706	1	4046	4046		6.7232	0	1	89823			9809	11508	5470	5470	12839	12839					-0.05856994557098005
FSFWEVMAT	9	Unmodified	_FSFWEVMAT_					0	0	0		ENST00000523232.1_1_8:137528301-137531442:+|nuORF	ENST00000523232.1_1_8:137528301-137531442:+|nuORF	ENST00000523232.1_1_8:137528301-137531442:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.7879028320312	2	559.254785	1116.49502	-0.15861	-8.8705E-05	-0.23683	-0.00013245	-0.39544	-0.00022115	559.2544047832283	25.209	0.69735	25.178	24.953	25.65	-0.031408					35	24	2	0	0	0	0.25988	1	4069	4069		3.9444	0	1	69766			9810	11508	5470	5470	12840	12840					-0.05856994557098005
FSFYRHHVNFK	11	Unmodified	_FSFYRHHVNFK_					0	0	0		nc|ENSG00000099840|Q1ZYL8-3|IZUMO4;nc|ENSG00000099840|Q1ZYL8-4|IZUMO4;ENST00000591894.5_1_19:2096998-2098450:+|nuORF;ENST00000498554.5_1_19:2096914-2097955:+|nuORF;ENST00000497445.5_1_19:2096872-2097684:+|nuORF;ENST00000478879.5_1_19:2096872-2098127:+|nuORF;ENST00000590985.2_1_19:2096914-2098127:+|nuORF;nc|ENSG00000099840|Q1ZYL8-2|IZUMO4;ENSG00000099840|ENST00000395301|IZUMO4	nc|ENSG00000099840|Q1ZYL8-3|IZUMO4	nc|ENSG00000099840|Q1ZYL8-3|IZUMO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2666931152344	3	494.586077	1480.7364	0.2046	0.00010119	-0.71894	-0.00035558	-0.51434	-0.00025439	494.5855796238343	49.155	0.59395	49.187	48.954	49.548	0.032043					45	20	3	0	0	0	0.33236	1	11224	11224		1.1098	0.65524	1	460270			9811	1500	5471	5471	12841	12841					0.015263771942272797
FSFYRHHVNFK	11	Unmodified	_FSFYRHHVNFK_					0	0	0		nc|ENSG00000099840|Q1ZYL8-3|IZUMO4;nc|ENSG00000099840|Q1ZYL8-4|IZUMO4;ENST00000591894.5_1_19:2096998-2098450:+|nuORF;ENST00000498554.5_1_19:2096914-2097955:+|nuORF;ENST00000497445.5_1_19:2096872-2097684:+|nuORF;ENST00000478879.5_1_19:2096872-2098127:+|nuORF;ENST00000590985.2_1_19:2096914-2098127:+|nuORF;nc|ENSG00000099840|Q1ZYL8-2|IZUMO4;ENSG00000099840|ENST00000395301|IZUMO4	nc|ENSG00000099840|Q1ZYL8-3|IZUMO4	nc|ENSG00000099840|Q1ZYL8-3|IZUMO4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	494.586077	1480.7364	0.53632	0.00026526	-1.2237	-0.00060521	-0.68734	-0.00033995	494.5853342443472	49.133	0.5177	49.133	48.97	49.488	0	-0.079318	-0.00045411	NaN	1.1098	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360770			9812	1500	5471	5471							0.015263771942272797
FSGGKGLFD	9	Unmodified	_FSGGKGLFD_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;ENST00000456967.5_1_10:51818982-51821282:-|nuORF;ENST00000417804.1_1_10:51819001-51821324:-|nuORF	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.27203369140625	2	464.232168	926.449782	-0.14353	-6.6632E-05	1.8481	0.00085795	1.7046	0.00079132	464.23302562440136	14.401	0.32814	14.335	14.181	14.51	-0.066068					21	11	3	0	0	0	0.25431	1	678	678		9.3831	1.473	1	33598			9813	1481	5472	5472	12842	12842					-0.016384770279501026
FSGKGIIK	8	Unmodified	_FSGKGIIK_					0	0	0			REV__ENSG00000143479|ENST00000367109|DYRK3	REV__ENSG00000143479|ENST00000367109|DYRK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.26336669921875	2	425.263271	848.511988	-0.12083	-5.1383E-05	0.57829	0.00024593	0.45746	0.00019454	425.2634150499384	16.762	1.1685	16.762	16.491	17.66	0					61	40	2	0	0	0	0.18275	1	1463	1463		46.021	3.9264	1	1272600	+		9814	16182	5473	5473	12843	12843					0.08167294111035517
FSGKLRLLV	9	Unmodified	_FSGKLRLLV_					0	0	0		nc|ENSG00000090612|Q14587-2|ZNF268;ENST00000536899.6_1_12:133758152-133781113:+|nuORF;ENSG00000090612|ENST00000536435|ZNF268;ZNF268|p.T941Kfs*12|1|0.17|ENSG00000090612|chr12:133204506-133204507|-/AAATTATCAATGTTTGTCATCT|frameshift_variant	nc|ENSG00000090612|Q14587-2|ZNF268	nc|ENSG00000090612|Q14587-2|ZNF268	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7669067382812	2	516.831852	1031.64915	0.3453	0.00017846	-0.41193	-0.0002129	-0.066629	-3.4436E-05	517.3329519658348	38.087	0.13548	38.178	38.101	38.237	0.090885					6	4	2	0	0	0	0.25706	1	7889	7889		6.7232	1.9672	1	54914			9815	1383	5474	5474	12844	12844					0.13459202990588892
FSGLGHPLPA	10	Unmodified	_FSGLGHPLPA_					0	0	0		ENST00000538888.5_1_12:123738581-123738641:+|nuORF	ENST00000538888.5_1_12:123738581-123738641:+|nuORF	ENST00000538888.5_1_12:123738581-123738641:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.26922607421875	2	498.269084	994.523616	0.21232	0.00010579	-0.052386	-2.6103E-05	0.15994	7.9691E-05	498.2690017024134	40.996	0.84277	40.996	40.688	41.531	0					99	30	4	0	0	0	0.20278	1	8891	8891		32.305	2.0807	1	7134900			9816	11705	5475	5475	12845	12845					0.02613491134366086
FSGLKTFLSHH	11	Unmodified	_FSGLKTFLSHH_					0	0	0		nc|ENSG00000100422|Q8TCT0-2|CERK;ENSG00000100422|ENST00000216264|CERK	nc|ENSG00000100422|Q8TCT0-2|CERK	nc|ENSG00000100422|Q8TCT0-2|CERK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.834228515625	2	637.33803	1272.66151	0.33418	0.00021299	-1.0351	-0.00065972	-0.70094	-0.00044674	637.3373254641905	58.945	0.42062	58.945	58.712	59.133	0					20	14	2	0	0	0	0.32557	1	14332	14332		15.248	4.4246	1	183740			9817	1593	5476	5476	12846	12846					0.036081946630019957
FSGNIYHIL	9	Unmodified	_FSGNIYHIL_					0	0	0		ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	ENSG00000088854|ENST00000252032|DNAAF9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8429565429688	2	532.282192	1062.54983	0.64015	0.00034074	-1.0063	-0.00053565	-0.36619	-0.00019491	532.2821914088826	44.869	0.91164	44.944	44.643	45.554	0.07505					110	33	5	0	0	0	0.19686	1	9974	9974		31.268	0	1	4083600			9818	1335	5477	5477	12847	12847					0.021057603058579843
FSGNPIKV	8	Unmodified	_FSGNPIKV_					0	0	0		ENST00000487509.6_1_16:31199536-31202756:+|nuORF;nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS	ENST00000487509.6_1_16:31199536-31202756:+|nuORF	ENST00000487509.6_1_16:31199536-31202756:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.8522033691406	2	431.245078	860.475603	-0.10221	-4.4078E-05	-0.99444	-0.00042885	-1.0966	-0.00047292	431.24498488066325	39.526	0.66452	39.619	39.278	39.943	0.09267					51	23	3	0	0	0	0.28547	1	8344	8344		39.95	13.066	1	384780			9819	1357	5478	5478	12848	12848					0.03978417214341334
FSGQMYQQ	8	Unmodified	_FSGQMYQQ_					0	0	0		ENST00000481203.1_1_3:100463567-100467372:+|nuORF	ENST00000481203.1_1_3:100463567-100467372:+|nuORF	ENST00000481203.1_1_3:100463567-100467372:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7126770019531	2	494.713285	987.412016	0.4263	0.00021089	-1.3852	-0.0006853	-0.95894	-0.0004744	494.7127555442814	70.678	0.5034	70.678	70.46	70.963	0					35	17	3	0	0	0	0.33441	1	17938	17938		26.884	6.4691	1	269050			9820	11024	5479	5479	12849	12849					-0.08219311285074582
FSGRILGL	8	Unmodified	_FSGRILGL_					0	0	0		nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1;ENSG00000138411|ENST00000644978|HECW2	nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.7606201171875	2	431.760895	861.507237	0.59826	0.00025831	-0.89282	-0.00038549	-0.29456	-0.00012718	431.7605195875058	55.995	0.50451	55.995	55.707	56.212	0					28	17	2	0	0	0	0.088223	1	13394	13394		62.573	20.733	1	742030			9821	297;4148	5480	5480	12850	12850					0.07094409968271975
FSGRILGL	8	Unmodified	_FSGRILGL_					0	0	0		nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1;ENSG00000138411|ENST00000644978|HECW2	nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.76092529296875	2	431.760895	861.507237	0.41174	0.00017777	-0.52497	-0.00022666	-0.11323	-4.8889E-05	431.76059524663884	55.953	0.48557	56.024	55.727	56.213	0.070889					32	17	3	0	0	0	0.088223	1	13384	13384		62.573	12.64	1	1134200			9822	297;4148	5480	5480	12851	12851					0.07094409968271975
FSGRILGL	8	Unmodified	_FSGRILGL_					0	0	0		nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1;ENSG00000138411|ENST00000644978|HECW2	nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.7607421875	2	431.760895	861.507237	0.48607	0.00020987	-0.3861	-0.0001667	0.099974	4.3165E-05	431.76064854154197	56.199	0.54972	56.18	55.853	56.403	-0.019077					28	19	2	0	0	0	0.063256	1	13462	13462		71.922	13.243	1	898050			9823	297;4148	5480	5480	12852	12852					0.07094409968271975
FSGRRPAASG	10	Unmodified	_FSGRRPAASG_					0	0	0		ENST00000358011.8_2_1:38156027-38156186:-|nuORF	ENST00000358011.8_2_1:38156027-38156186:-|nuORF	ENST00000358011.8_2_1:38156027-38156186:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.7388916015625	2	503.264865	1004.51518	0.31215	0.00015709	0.026052	1.3111E-05	0.3382	0.0001702	503.2647062577412	17.232	0.90845	17.232	16.72	17.628	0					65	31	3	0	0	0	0.3144	1	1518	1518		13.042	13.042	1	165310			9824	9642	5481	5481	12853	12853					0.013099372177521218
FSGRRPAASG	10	Unmodified	_FSGRRPAASG_					0	0	0		ENST00000358011.8_2_1:38156027-38156186:-|nuORF	ENST00000358011.8_2_1:38156027-38156186:-|nuORF	ENST00000358011.8_2_1:38156027-38156186:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	503.264865	1004.51518	0.12705	6.3939E-05	0.46851	0.00023578	0.59556	0.00029972	503.2649489929657	17.446	0.83073	17.328	16.772	17.603	-0.11739	0.043556	0.00028194	NaN	8.7454	64	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157450			9825	9642	5481	5481							0.013099372177521218
FSGRRPAASG	10	Unmodified	_FSGRRPAASG_					0	0	0		ENST00000358011.8_2_1:38156027-38156186:-|nuORF	ENST00000358011.8_2_1:38156027-38156186:-|nuORF	ENST00000358011.8_2_1:38156027-38156186:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	503.264865	1004.51518	0.35293	0.00017762	0.077494	3.9E-05	0.43043	0.00021662	503.26479778442047	17.355	0.8661	17.294	16.81	17.676	-0.060429	0.0096368	-0.00011163	NaN	8.7454	72	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135380			9826	9642	5481	5481							0.013099372177521218
FSGSASSVPFH	11	Unmodified	_FSGSASSVPFH_					0	0	0			REV__ENST00000496577.5_1_1:113231344-113241292:+|nuORF	REV__ENST00000496577.5_1_1:113231344-113241292:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.3269653320312	2	561.764363	1121.51417	-0.020321	-1.1416E-05	3.311	0.00186	3.2907	0.0018486	561.7662412893694	42.503	0.29871	42.503	42.407	42.706	0					13	10	2	0	0	0	0.33119	1	9277	9277		5.7319	0.97584	1	112550	+		9827	21672	5482	5482	12854	12854					-0.04172321941791779
FSGTVFQVTL	10	Unmodified	_FSGTVFQVTL_					0	0	0			REV__ENSG00000181467|ENST00000323534|RAP2B	REV__ENSG00000181467|ENST00000323534|RAP2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7933349609375	2	549.795132	1097.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.592	1	41.682	41.182	42.182	0.090252								0	0	0	0.34994	1	8980	8980		14.838	0	1		+		9828	18150	5483	5483	12855	12855					0.030826097574845335
FSGYRYLVC	9	Unmodified	_FSGYRYLVC_					0	0	0			REV__nc|ENSG00000185664|P40967-4|PMEL	REV__nc|ENSG00000185664|P40967-4|PMEL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.268310546875	2	554.268227	1106.5219	0.3527	0.00019549	-0.33493	-0.00018564	0.017762	9.8449E-06	554.2681402790072	32.851	1.0509	32.906	32.562	33.613	0.055309					110	37	4	0	0	0	0.30166	1	6327	6327		8.5933	2.2392	1	1180200	+		9829	18397	5484	5484	12856	12856					-0.027098859458874358
FSHATMAP	8	Unmodified	_FSHATMAP_					0	0	0			REV__nc|ENSG00000171130|Q8NHE4-4|ATP6V0E2	REV__nc|ENSG00000171130|Q8NHE4-4|ATP6V0E2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.88818359375	2	431.199813	860.385073	-0.057084	-2.4615E-05	0.033282	1.4351E-05	-0.023802	-1.0263E-05	431.19977400794465	24.608	0.58558	24.55	24.221	24.807	-0.058414					28	19	2	0	0	0	0.34185	1	3722	3722		10.183	0	1	35519	+		9830	23082	5485	5485	12857	12857					-0.05070375105594849
FSHATMAP	8	Unmodified	_FSHATMAP_					0	0	0			REV__nc|ENSG00000171130|Q8NHE4-4|ATP6V0E2	REV__nc|ENSG00000171130|Q8NHE4-4|ATP6V0E2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	431.199813	860.385073	-0.24612	-0.00010613	0.28495	0.00012287	0.038836	1.6746E-05	431.1999835922168	24.479	0.51054	24.44	24.278	24.789	-0.038927	-0.054882	0.00014917	NaN	10.183	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54154	+		9831	23082	5485	5485							-0.05070375105594849
FSHFVWAT	8	Unmodified	_FSHFVWAT_					0	0	0		HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|80|2|sense	HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|80|2|sense	HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|80|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7876281738281	2	497.742702	993.470852	-0.36623	-0.00018229	-0.33675	-0.00016761	-0.70298	-0.0003499	497.74049511609604	34.394	0.39186	34.465	34.18	34.572	0.070644					21	13	3	0	0	0	0.34046	1	6723	6723		14.582	0	1	77069			9832	12423	5486	5486	12858	12858					-0.026144669284235533
FSHNSPAFE	9	Unmodified	_FSHNSPAFE_					0	0	0			REV__ENSG00000175931|ENST00000319380|UBE2O	REV__ENSG00000175931|ENST00000319380|UBE2O	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2488403320312	2	518.230156	1034.44576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.842	1	33.842	33.342	34.342	0								0	0	0	0.19534	1	6609	6609		24.021	7.0783	1		+		9833	17913	5487	5487	12859	12859					-0.07008566521653847
FSHNSPAFE	9	Unmodified	_FSHNSPAFE_					0	0	0			REV__ENSG00000175931|ENST00000319380|UBE2O	REV__ENSG00000175931|ENST00000319380|UBE2O	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2486572265625	2	518.230156	1034.44576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.568	1	33.634	33.134	34.134	0.066704								0	0	0	0.17427	1	6520	6520		29.082	12.139	1		+		9834	17913	5487	5487	12860	12860					-0.07008566521653847
FSHNSPAFE	9	Unmodified	_FSHNSPAFE_					0	0	0			REV__ENSG00000175931|ENST00000319380|UBE2O	REV__ENSG00000175931|ENST00000319380|UBE2O	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2489013671875	2	518.230156	1034.44576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.731	1	33.797	33.297	34.297	0.066704								0	0	0	0.21009	1	6569	6569		19.257	3.4098	1		+		9835	17913	5487	5487	12861	12861					-0.07008566521653847
FSHVSSTLVQE	11	Unmodified	_FSHVSSTLVQE_					0	0	0			REV__ENSG00000132854|ENST00000371153|KANK4	REV__ENSG00000132854|ENST00000371153|KANK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.8403930664062	2	617.309135	1232.60372	0.85389	0.00052711	4.2776	0.0026406	5.1315	0.0031677	617.3121632808735	47.24	0.27361	47.295	47.168	47.442	0.054371					11	9	2	0	0	0	0.2382	1	10732	10732		57.722	38.36	1	215690	+		9836	15591	5488	5488	12862	12862					-0.003281120530800763
FSIFLCKEF	9	Unmodified	_FSIFLCKEF_					0	0	0			REV__chr2:169259217-169268127|138|10.35|0.1|6.72|-|0|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|9	REV__chr2:169259217-169268127|138|10.35|0.1|6.72|-|0|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2788696289062	2	567.288628	1132.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.421	1	53.421	52.921	53.921	0								0	0	0	0.19534	1	12614	12614		24.021	5.8742	1		+		9837	13172	5489	5489	12863	12863					0.0017245537374037667
FSIFLCKEF	9	Unmodified	_FSIFLCKEF_					0	0	0			REV__chr2:169259217-169268127|138|10.35|0.1|6.72|-|0|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|9	REV__chr2:169259217-169268127|138|10.35|0.1|6.72|-|0|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.279541015625	2	567.288628	1132.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.329	1	53.385	52.885	53.885	0.056255								0	0	0	0.19534	1	12583	12583		24.021	7.0783	1		+		9838	13172	5489	5489	12864	12864					0.0017245537374037667
FSIFLCKEF	9	Unmodified	_FSIFLCKEF_					0	0	0			REV__chr2:169259217-169268127|138|10.35|0.1|6.72|-|0|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|9	REV__chr2:169259217-169268127|138|10.35|0.1|6.72|-|0|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2793579101562	2	567.288628	1132.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.618	1	53.609	53.109	54.109	-0.0096054								0	0	0	0.18053	1	12667	12667		27.629	10.687	1		+		9839	13172	5489	5489	12865	12865					0.0017245537374037667
FSIIDVTFH	9	Unmodified	_FSIIDVTFH_					0	0	0			REV__ENST00000463046.5_1_2:61435991-61439052:-|nuORF	REV__ENST00000463046.5_1_2:61435991-61439052:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7819213867188	2	539.782025	1077.5495	0.64743	0.00034947	0.96278	0.00051969	1.6102	0.00086916	539.7826468978574	54.215	0.63489	54.278	53.876	54.511	0.063206					52	22	3	0	0	0	0.062246	1	12876	12876		48.346	0	1	1311000	+		9840	21242	5490	5490	12866	12866					0.013823405859966442
FSIIDVTFH	9	Unmodified	_FSIIDVTFH_					0	0	0			REV__ENST00000463046.5_1_2:61435991-61439052:-|nuORF	REV__ENST00000463046.5_1_2:61435991-61439052:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7819213867188	2	539.782025	1077.5495	0.74308	0.0004011	0.25212	0.00013609	0.99519	0.00053719	539.7821437903871	54.439	0.56822	54.424	54.113	54.681	-0.015923					47	19	3	0	0	0	0.12846	1	12968	12968		34.102	3.8776	1	1431800	+		9841	21242	5490	5490	12867	12867					0.013823405859966442
FSIKKEMVM	9	Unmodified	_FSIKKEMVM_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2719116210938	2	556.795763	1111.57697	0.48388	0.00026942	-0.43499	-0.0002422	0.04889	2.7222E-05	556.7954046890607	29.584	0.5028	29.584	29.385	29.888	0					30	17	2	0	0	0	0.25938	1	5378	5378		4.3292	0.73274	1	173360			9842	4263	5491	5491	12868	12868					0.02564784530363795
FSIKMCLL	8	Carbamidomethyl (C),Oxidation (M)	_FSIKM(Oxidation (M))C(Carbamidomethyl (C))LL_	FSIKMC(1)LL	FSIKM(1)CLL	FSIKMC(48)LL	FSIKM(48)CLL	0	1	1		ENST00000394780.7_2_X:110956478-110961393:+|nuORF	ENST00000394780.7_2_X:110956478-110961393:+|nuORF	ENST00000394780.7_2_X:110956478-110961393:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2770385742188	2	514.269381	1026.52421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.921	1	68.901	68.401	69.401	-0.019157								0	0	0	0.17391	1	17377	17377		48.346	16.04	1				9843	10078	5492	5492	12869	12869	9	937			0.012008264675841929
FSILGLSAIL	10	Unmodified	_FSILGLSAIL_					0	0	0			REV__ENSG00000180884|ENST00000404801|ZNF792	REV__ENSG00000180884|ENST00000404801|ZNF792	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.30029296875	2	517.318243	1032.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.615	1	71.588	71.088	72.088	-0.027275								0	0	0	0.28989	1	18202	18202		29.082	3.6823	1		+		9844	18122	5493	5493	12870	12870					0.10692674659549084
FSILPKIGGN	10	Unmodified	_FSILPKIGGN_					0	0	0		nc|ENSG00000116774|Q9NRN5-3|OLFML3	nc|ENSG00000116774|Q9NRN5-3|OLFML3	nc|ENSG00000116774|Q9NRN5-3|OLFML3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7514038085938	2	523.305667	1044.59678	0.99222	0.00051923	-0.19812	-0.00010368	0.7941	0.00041556	523.3054455259015	56.129	0.42641	56.2	56.109	56.536	0.070885					18	15	2	0	0	0	0.31267	1	13524	13524		6.2058	0	1	370270			9845	12667	5494	5494	12871	12871					0.0762661985700106
FSILTLALNA	10	Unmodified	_FSILTLALNA_					0	0	0		ENST00000366997.8_1_1:211922280-211922472:-|nuORF	ENST00000366997.8_1_1:211922280-211922472:-|nuORF	ENST00000366997.8_1_1:211922280-211922472:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2313842773438	2	531.813325	1061.6121	0.54659	0.00029068	-0.1503	-7.9934E-05	0.39628	0.00021075	531.8132901031962	72.367	0.64798	72.424	72.198	72.846	0.056572					38	23	2	0	0	0	0.31039	1	18400	18400		18.146	0	1	291730			9846	9719	5495	5495	12872	12872					0.08375486654153974
FSILWISLI	9	Unmodified	_FSILWISLI_					0	0	0		ENST00000370751.9_1_1:79110053-79110347:+|nuORF	ENST00000370751.9_1_1:79110053-79110347:+|nuORF	ENST00000370751.9_1_1:79110053-79110347:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7882080078125	2	546.328611	1090.64267	0.34001	0.00018576	-3.693	-0.0020176	-3.353	-0.0018318	546.3262863702986	42.702	0.35208	42.794	42.663	43.015	0.091362					27	12	3	0	0	0	0.22596	1	9269	9269		10.824	0.75	1	324690			9847	9806	5496	5496	12873	12873					0.10097265039235026
FSIPDRTR	8	Unmodified	_FSIPDRTR_					0	0	0		ENST00000538901.1_1_12:128425217-128434700:-|nuORF	ENST00000538901.1_1_12:128425217-128434700:-|nuORF	ENST00000538901.1_1_12:128425217-128434700:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2821960449219	2	496.269616	990.524678	0.41015	0.00020355	0.039944	1.9823E-05	0.4501	0.00022337	496.26963968419005	19.783	0.37905	19.667	19.433	19.812	-0.11592					17	12	2	0	0	0	0.34419	1	2274	2274		1.8442	0.36234	1	34721			9848	11706	5497	5497	12874	12874					0.02903705503274523
FSIPLNVPPF	10	Unmodified	_FSIPLNVPPF_					0	0	0			REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.8158569335938	2	565.815867	1129.61718	0.61209	0.00034633	-0.44803	-0.0002535	0.16407	9.2831E-05	565.8156032337895	84.647	1.5169	84.727	84.394	85.911	0.080879					122	58	3	0	0	0	0.36002	1	22190	22190		10.824	2.2306	1	1468000	+		9849	21751	5498	5498	12875	12875					0.05755790516786874
FSIPLNVPPF	10	Unmodified	_FSIPLNVPPF_					0	0	0			REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.8159790039062	2	565.815867	1129.61718	0.47533	0.00026895	-0.28213	-0.00015963	0.1932	0.00010932	565.8156863614412	84.762	1.5488	84.749	84.385	85.934	-0.01284					118	60	3	0	0	0	0.36002	1	22218	22218		10.824	1.4765	1	1574500	+		9850	21751	5498	5498	12876	12876					0.05755790516786874
FSITKIESL	9	Unmodified	_FSITKIESL_					0	0	0			REV__ENSG00000176219|ENST00000315519|OR11H6	REV__ENSG00000176219|ENST00000315519|OR11H6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.8026733398438	2	519.297507	1036.58046	0.44704	0.00023215	3.6792	0.0019106	4.1263	0.0021428	519.8017609226881	66.328	1.3393	66.412	65.623	66.963	0.083832					115	48	5	0	0	0	0.23767	1	16555	16555		18.146	2.3781	1	813770	+		9851	17927	5499	5499	12877	12877					0.06363493900221329
FSITYTTQSE	10	Unmodified	_FSITYTTQSE_					0	0	0			REV__ENSG00000155875|ENST00000380534|SAXO1	REV__ENSG00000155875|ENST00000380534|SAXO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.7744140625	2	588.774593	1175.53463	0.45546	0.00026816	-2.0125	-0.0011849	-1.5571	-0.00091677	588.7736930280529	72.215	0.64933	72.215	71.963	72.613	0					55	23	4	0	0	0	0.23397	1	18407	18407		28.495	2.2264	1	442510	+		9852	16715	5500	5500	12878	12878					-0.04611196072664825
FSKALFWF	8	Unmodified	_FSKALFWF_					0	0	0		ENST00000439268.6_1_19:5916266-5917058:-|nuORF	ENST00000439268.6_1_19:5916266-5917058:-|nuORF	ENST00000439268.6_1_19:5916266-5917058:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7593383789062	2	523.278921	1044.54329	-0.19737	-0.00010328	1.4858	0.00077751	1.2885	0.00067423	523.2796592299662	34.522	0.53125	34.522	34.22	34.751	0					28	18	2	0	0	0	0.33995	1	6729	6729		5.7604	3.9162	1	89715			9853	10542	5501	5501	12879	12879					0.022798671451482733
FSKLSFCYLCF	11	Unmodified	_FSKLSFCYLCF_					0	0	0		LRRC8C|p.D786Vfs*18|1|0.03|ENSG00000171488|chr1:89714926-89714927|-/TAGAGTTC|frameshift_variant;ENSG00000171488|ENST00000370454|LRRC8C	LRRC8C|p.D786Vfs*18|1|0.03|ENSG00000171488|chr1:89714926-89714927|-/TAGAGTTC|frameshift_variant	LRRC8C|p.D786Vfs*18|1|0.03|ENSG00000171488|chr1:89714926-89714927|-/TAGAGTTC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7923889160156	3	453.215494	1356.62465	0.5838	0.00026459	-3.9929	-0.0018097	-3.4091	-0.0015451	453.21377817837913	50.749	0.57667	50.749	50.595	51.172	0					37	20	3	0	0	0	0.32824	1	11750	11750		12.856	3.312	1	249250			9854	6546	5502	5502	12880	12880					-0.039395612694534066
FSKRRKGP	8	Unmodified	_FSKRRKGP_					0	0	0			REV__ENSG00000184661|ENST00000330560|CDCA2	REV__ENSG00000184661|ENST00000330560|CDCA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2591552734375	2	488.295968	974.577383	0.23677	0.00011561	-0.97136	-0.00047431	-0.73459	-0.0003587	488.29564077165406	17.565	0.53094	17.565	17.368	17.898	0					27	17	3	0	0	0	0.344	1	1635	1635		2.5775	0.51773	1	33845	+		9855	18328	5503	5503	12881	12881					0.08907708356753119
FSKRRKGP	8	Unmodified	_FSKRRKGP_					0	0	0			REV__ENSG00000184661|ENST00000330560|CDCA2	REV__ENSG00000184661|ENST00000330560|CDCA2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	488.295968	974.577383	0.21828	0.00010659	-1.1959	-0.00058394	-0.9776	-0.00047736	488.2953426513173	17.697	0.39985	17.637	17.444	17.844	-0.060429	0.039536	-4.1242E-06	NaN	2.5775	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41821	+		9856	18328	5503	5503							0.08907708356753119
FSKTKTISF	9	Unmodified	_FSKTKTISF_					0	0	0		nc|ENSG00000258806|Q8NGC8|OR11H7	nc|ENSG00000258806|Q8NGC8|OR11H7	nc|ENSG00000258806|Q8NGC8|OR11H7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2573852539062	2	529.797675	1057.5808	0.49269	0.00026103	-1.5557	-0.00082423	-1.063	-0.0005632	529.7973066630012	26.193	0.53901	26.171	25.991	26.53	-0.022236					33	18	2	0	0	0	0.25988	1	4360	4360		3.9444	0.3479	1	128210			9857	12982	5504	5504	12882	12882					0.05430913620079991
FSKVFFQHTK	10	Unmodified	_FSKVFFQHTK_					0	0	0			REV__nc|ENSG00000143776|Q5VT25-3|CDC42BPA	REV__nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.863525390625	3	423.564391	1267.67134	-0.038728	-1.6404E-05	1.161	0.00049177	1.1223	0.00047537	423.56513525424333	31.42	0.27819	31.461	31.281	31.559	0.040991					11	9	2	0	0	0	0.3183	1	5842	5842		5.4027	1.8157	1	73810	+		9858	16199	5505	5505	12883	12883					0.04821382668365004
FSLDVHPYIL	10	Unmodified	_FSLDVHPYIL_					0	0	0		ENSG00000073150|ENST00000395842|PANX2;nc|ENSG00000073150|Q96RD6-1|PANX2;nc|ENSG00000073150|Q96RD6-2|PANX2	ENSG00000073150|ENST00000395842|PANX2	ENSG00000073150|ENST00000395842|PANX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.8114624023438	2	602.324057	1202.63356	0.41661	0.00025093	-0.17676	-0.00010647	0.23984	0.00014446	602.3239123075258	69.123	0.88763	69.123	68.872	69.76	0					65	31	3	0	0	0	0.27059	1	17555	17555		24.021	3.5669	1	628540			9859	999	5506	5506	12884	12884					0.040348716828930264
FSLDVHPYIL	10	Unmodified	_FSLDVHPYIL_					0	0	0		ENSG00000073150|ENST00000395842|PANX2;nc|ENSG00000073150|Q96RD6-1|PANX2;nc|ENSG00000073150|Q96RD6-2|PANX2	ENSG00000073150|ENST00000395842|PANX2	ENSG00000073150|ENST00000395842|PANX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8114013671875	2	602.324057	1202.63356	0.30578	0.00018418	-0.0076923	-4.6333E-06	0.29809	0.00017955	602.3240403674426	69.158	0.78099	69.139	68.895	69.676	-0.019157					57	27	3	0	0	0	0.2593	1	17559	17559		25.399	2.663	1	573900			9860	999	5506	5506	12885	12885					0.040348716828930264
FSLEPLEEYDL	11	Unmodified	_FSLEPLEEYDL_					0	0	0			REV__PCDHB11|p.V349Cfs*21|1|0.22|ENSG00000197479|chr5:141200817-141200818|-/T|frameshift_variant	REV__PCDHB11|p.V349Cfs*21|1|0.22|ENSG00000197479|chr5:141200817-141200818|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.21868896484375	3	452.218614	1353.63401	0.20831	9.42E-05	0.046299	2.0937E-05	0.2546	0.00011514	452.2186541555142	40.722	0.86559	40.722	40.334	41.199	0					106	31	4	0	0	0	0.45202	1	8674	8674		4.4062	0	1	2772900	+		9861	18740	5507	5507	12886	12886					-0.028657981785499942
FSLFHNLF	8	Unmodified	_FSLFHNLF_					0	0	0			REV__ENST00000586529.1_1_19:10428000-10428129:-|nuORF	REV__ENST00000586529.1_1_19:10428000-10428129:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2977294921875	2	512.766178	1023.5178	-0.037545	-1.9252E-05	-3.3297	-0.0017074	-3.3673	-0.0017266	512.7639558965576	59.674	0.1115	59.769	59.687	59.798	0.095093					5	3	2	0	0	0	0.33245	1	14522	14522		19.439	1.304	1	45610	+		9862	22520	5508	5508	12887	12887					0.006983926227007942
FSLFPSAPF	9	Unmodified	_FSLFPSAPF_					0	0	0		ENST00000374825.8_1_6:32948646-32949051:+|nuORF	ENST00000374825.8_1_6:32948646-32949051:+|nuORF	ENST00000374825.8_1_6:32948646-32949051:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.79290771484375	2	506.760561	1011.50657	0.65653	0.0003327	-4.1858	-0.0021212	-3.5292	-0.0017885	506.75891501425093	37.196	0.35756	37.196	36.875	37.233	0					13	12	2	0	0	0	0.24311	1	7569	7569		16.942	0	1	101280			9863	9902	5509	5509	12888	12888					0.001275705285706863
FSLFTTTYAL	10	Unmodified	_FSLFTTTYAL_					0	0	0		ENSG00000130538|ENST00000643195|OR11H1;nc|ENSG00000130538|Q8NG94|OR11H1;ENSG00000257115|ENST00000550708|OR11H12	ENSG00000130538|ENST00000643195|OR11H1	ENSG00000130538|ENST00000643195|OR11H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3037109375	2	582.30279	1162.59103	0.23028	0.00013409	1.6969	0.00098813	1.9272	0.0011222	582.3038491718851	17.754	0.61865	17.754	17.341	17.96	0					41	20	3	0	0	0	0.32123	1	1717	1717		1.6526	0	1	75441			9864	3484	5510	5510	12889	12889					0.016234765546414565
FSLHLYKRWFR	11	Unmodified	_FSLHLYKRWFR_					0	0	0			REV__ENSG00000160957|ENST00000617875|RECQL4	REV__ENSG00000160957|ENST00000617875|RECQL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.75048828125	3	518.289372	1551.84629	0.12758	6.6123E-05	-1.5152	-0.00078532	-1.3876	-0.00071919	518.2880640231919	18.716	0.37004	18.599	18.414	18.784	-0.11739					20	12	2	0	0	0	0.33348	1	2039	2039		0.073264	0.073264	1	79255	+		9865	16927	5511	5511	12890	12890					0.09243802533364942
FSLKALGK	8	Unmodified	_FSLKALGK_					0	0	0		nc|ENSG00000102181|Q8TCZ2-4|CD99L2	nc|ENSG00000102181|Q8TCZ2-4|CD99L2	nc|ENSG00000102181|Q8TCZ2-4|CD99L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.8521728515625	2	432.271096	862.527639	0.1687	7.2925E-05	-0.16338	-7.0624E-05	0.0053215	2.3003E-06	432.27084799440536	40.023	0.53411	40.116	39.75	40.284	0.09267					43	18	3	0	0	0	0.34131	1	8397	8397		7.9102	0	1	320820			9866	12624	5512	5512	12891	12891					0.09087580628079195
FSLKSVFPN	9	Unmodified	_FSLKSVFPN_					0	0	0		chr2:69789926-69790680|323|10.1|0.0|19.95|-|0|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|23	chr2:69789926-69790680|323|10.1|0.0|19.95|-|0|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|23	chr2:69789926-69790680|323|10.1|0.0|19.95|-|0|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|23	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.8023071289062	2	519.784567	1037.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.387	1	66.471	65.971	66.971	0.083832								0	0	0	0.21009	1	16606	16606		19.257	0	1				9867	152	5513	5513	12892	12892					0.03730644448637577
FSLLEETTVTT	11	Unmodified	_FSLLEETTVTT_					0	0	0			REV__ENSG00000197816|ENST00000529487|CCDC180	REV__ENSG00000197816|ENST00000529487|CCDC180	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.21405029296875	3	414.215093	1239.62345	0.10429	4.3197E-05	-2.6008	-0.0010773	-2.4966	-0.0010341	414.21468865602947	17.389	1.7029	17.271	16.828	18.531	-0.11739					216	59	6	0	0	0	0.31508	1	1573	1573		20.871	0.46025	1	11457000	+		9868	18769	5514	5514	12893	12893					0.013222191669910899
FSLLEPPF	8	Unmodified	_FSLLEPPF_					0	0	0		ENST00000587342.1_1_18:47808965-47809814:-|nuORF	ENST00000587342.1_1_18:47808965-47809814:-|nuORF	ENST00000587342.1_1_18:47808965-47809814:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.2663269042969	2	475.255111	948.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.181	1	65.27	64.77	65.77	0.088882								0	0	0	0.34752	1	16237	16237		15.768	0.92995	1				9869	12129	5515	5515	12894	12894					0.019361681542818587
FSLLPTYLPV	10	Unmodified	_FSLLPTYLPV_					0	0	0		ENSG00000151952|ENST00000422113|TMEM132D	ENSG00000151952|ENST00000422113|TMEM132D	ENSG00000151952|ENST00000422113|TMEM132D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.7254028320312	2	575.33135	1148.64815	0.1193	6.8635E-05	-0.1124	-6.4667E-05	0.0068961	3.9675E-06	575.3311672675657	49.524	0.66136	49.556	49.096	49.758	0.032047					34	23	2	0	0	0	0.31039	1	11411	11411		18.146	0	1	174000			9870	4994	5516	5516	12895	12895					0.07976943830999517
FSLNINVSLC	10	Unmodified	_FSLNINVSLC_					0	0	0		ENST00000420095.1_1_3:8263573-8263864:-|nuORF	ENST00000420095.1_1_3:8263573-8263864:-|nuORF	ENST00000420095.1_1_3:8263573-8263864:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3035888671875	2	555.286617	1108.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.221	1	54.221	53.721	54.721	0								0	0	0	0.34454	1	12860	12860		17.113	2.2746	1				9871	10357	5517	5517	12896	12896					0.008743658800312915
FSLRKALVF	9	Unmodified	_FSLRKALVF_					0	0	0			REV__nc|ENSG00000007350|P51854-4|TKTL1	REV__nc|ENSG00000007350|P51854-4|TKTL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3162231445312	2	540.831852	1079.64915	0.4968	0.00026868	-0.47876	-0.00025893	0.018038	9.7555E-06	540.8314286936028	74.845	0.37283	74.898	74.703	75.076	0.052361					19	13	2	0	0	0	0.24581	1	19230	19230		16.942	1.0951	1	146280	+		9872	13385	5518	5518	12897	12897					0.11251202990615639
FSLTLMSFF	9	Unmodified	_FSLTLMSFF_					0	0	0		ENST00000421422.1_2_20:39812284-39812746:-|nuORF	ENST00000421422.1_2_20:39812284-39812746:-|nuORF	ENST00000421422.1_2_20:39812284-39812746:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8008422851562	2	546.775354	1091.53615	0.92469	0.0005056	-2.2958	-0.0012553	-1.3711	-0.0007497	546.7740294913262	77.257	0.96487	77.226	76.96	77.925	-0.031334					62	34	2	0	0	0	0.24311	1	20003	20003		16.942	2.3606	1	547910			9873	10372	5519	5519	12898	12898					-0.0059523351760617516
FSLVLVLD	8	Unmodified	_FSLVLVLD_					0	0	0		nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-2|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-4|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.7439880371094	2	453.270761	904.52697	-0.069021	-3.1285E-05	-2.2716	-0.0010296	-2.3406	-0.0010609	453.2697123657085	28.232	0.41401	28.228	28.024	28.438	-0.0042572					21	14	2	0	0	0	0.34218	1	4924	4924		9.3474	3.587	1	133400			9874	4108	5520	5520	12899	12899					0.0708874118837457
FSLVVDSKSL	10	Unmodified	_FSLVVDSKSL_					0	0	0			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8045654296875	2	547.808239	1093.60193	1.1375	0.00062316	-4.2424	-0.002324	-3.1049	-0.0017009	547.8040276274592	47.168	0.65049	47.222	46.972	47.622	0.054375					68	23	5	0	0	0	0.19345	1	10700	10700		33.445	4.3633	1	956980	+		9875	13908	5521	5521	12900	12900					0.058868789289590495
FSMPLPER	8	Unmodified	_FSMPLPER_					0	0	0		ENSG00000171872|ENST00000372299|KLF17	ENSG00000171872|ENST00000372299|KLF17	ENSG00000171872|ENST00000372299|KLF17	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7537841796875	2	488.74967	975.484787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.829	1	46.882	46.382	47.382	0.052574								0	0	0	0.15207	1	10583	10583		52.268	10.429	1				9876	6591	5522	5522	12901	12901					-0.003935574916454243
FSNIKQWQTLL	11	Unmodified	_FSNIKQWQTLL_					0	0	0		ENST00000464026.1_1_1:118426024-118439585:-|nuORF	ENST00000464026.1_1_1:118426024-118439585:-|nuORF	ENST00000464026.1_1_1:118426024-118439585:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2765808105469	3	459.922355	1376.74524	0.19676	9.0495E-05	-0.08011	-3.6844E-05	0.11665	5.3651E-05	459.92232443571345	53.004	0.59643	52.995	52.708	53.305	-0.0096054					51	21	4	0	0	0	0.33169	1	12472	12472		3.8459	3.8459	1	585510			9877	10778	5523	5523	12902	12902					0.07193306040016978
FSNVNCCLDVF	11	Unmodified	_FSNVNCCLDVF_					0	0	0		ENSG00000135898|ENST00000650999|GPR55	ENSG00000135898|ENST00000650999|GPR55	ENSG00000135898|ENST00000650999|GPR55	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2349853515625	3	420.851103	1259.53148	-0.043296	-1.8221E-05	2.8318	0.0011918	2.7885	0.0011736	421.1865398543189	49.407	0.30669	49.439	49.295	49.602	0.032043					15	10	2	0	0	0	0.33149	1	11369	11369		2.4348	0	1	83734			9878	3914	5524	5524	12903	12903					-0.0879048572269312
FSNYSPVIGF	10	Unmodified	_FSNYSPVIGF_					0	0	0		nc|ENSG00000165186|Q96NR3-2|PTCHD1;ENSG00000165186|ENST00000379361|PTCHD1;nc|ENSG00000244694|Q6ZW05-4|PTCHD4;ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4	nc|ENSG00000165186|Q96NR3-2|PTCHD1;nc|ENSG00000244694|Q6ZW05-4|PTCHD4	nc|ENSG00000165186|Q96NR3-2|PTCHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7631225585938	2	565.779482	1129.54441	0.32879	0.00018602	1.412	0.00079887	1.7408	0.00098489	565.7804188937735	51.555	1.1847	51.555	51.139	52.324	0					54	43	2	0	0	0	0.30958	1	12251	12251		19.257	0	1	362750			9879	5936;8575	5525	5525	12904	12904					-0.015179632766148643
FSPAAPHI	8	Unmodified	_FSPAAPHI_					0	0	0		ENST00000424834.6_1_13:24878485-24878731:+|nuORF	ENST00000424834.6_1_13:24878485-24878731:+|nuORF	ENST00000424834.6_1_13:24878485-24878731:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.22283935546875	2	420.224146	838.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.763	1	64.763	64.263	65.263	0								0	0	0	0.36169	1	16117	16117		9.3474	1.4373	1				9880	10402	5526	5526	12905	12905					0.00805861525805085
FSPAAPHI	8	Unmodified	_FSPAAPHI_					0	0	0		ENST00000424834.6_1_13:24878485-24878731:+|nuORF	ENST00000424834.6_1_13:24878485-24878731:+|nuORF	ENST00000424834.6_1_13:24878485-24878731:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2228088378906	2	420.224146	838.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.745	1	64.736	64.236	65.236	-0.0095291								0	0	0	0.36169	1	16100	16100		9.3474	0.75416	1				9881	10402	5526	5526	12906	12906					0.00805861525805085
FSPECPLPL	9	Unmodified	_FSPECPLPL_					0	0	0		ENST00000359297.6_1_1:36806079-36806220:-|nuORF	ENST00000359297.6_1_1:36806079-36806220:-|nuORF	ENST00000359297.6_1_1:36806079-36806220:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.30328369140625	2	501.751879	1001.4892	0.37863	0.00018998	-2.8805	-0.0014453	-2.5019	-0.0012553	501.7505440524674	73.13	0.50774	73.13	72.799	73.307	0					19	17	2	0	0	0	0.2322	1	18678	18678		14.838	4.7643	1	56550			9882	9662	5527	5527	12907	12907					-0.011480930687298496
FSPFPPSRL	9	Unmodified	_FSPFPPSRL_					0	0	0		ENST00000606212.1_1_1:247365030-247365162:-|nuORF	ENST00000606212.1_1_1:247365030-247365162:-|nuORF	ENST00000606212.1_1_1:247365030-247365162:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2684936523438	2	524.284734	1046.55492	0.46363	0.00024307	-0.66143	-0.00034678	-0.1978	-0.0001037	524.2843705166099	42.313	1.1796	42.398	42.034	43.214	0.085201					90	42	4	0	0	0	0.26612	1	9420	9420		13.906	0.39817	1	3456400			9883	12295	5528	5528	12908	12908					0.03350064168489553
FSPPHCHPGF	10	Unmodified	_FSPPHCHPGF_					0	0	0		ENST00000477118.2_3_1:201762910-201763243:+|nuORF	ENST00000477118.2_3_1:201762910-201763243:+|nuORF	ENST00000477118.2_3_1:201762910-201763243:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.7852172851562	2	563.250369	1124.48618	0.038771	2.1838E-05	-2.9975	-0.0016883	-2.9587	-0.0016665	563.2483899732237	65.395	0.46111	65.484	65.27	65.732	0.088882					24	16	2	0	0	0	0.31165	1	16331	16331		6.7232	0	1	132660			9884	10954	5529	5529	12909	12909					-0.07107923402895722
FSPRPQDIS	9	Unmodified	_FSPRPQDIS_					0	0	0		ENST00000509973.5_1_4:84026116-84035878:-|nuORF;ENST00000515389.5_1_4:84015842-84035875:-|nuORF	ENST00000509973.5_1_4:84026116-84035878:-|nuORF	ENST00000509973.5_1_4:84026116-84035878:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3191528320312	2	523.766906	1045.51926	0.58979	0.00030891	-0.29146	-0.00015266	0.29834	0.00015626	523.7670941817776	57.405	0.27901	57.405	57.273	57.552	0					13	9	2	0	0	0	0.24688	1	13871	13871		3.2813	0	1	93735			9885	11366	5530	5530	12910	12910					-0.0016801807919364364
FSPRVRRAT	9	Unmodified	_FSPRVRRAT_					0	0	0		ENSG00000095587|ENST00000357947|TLL2	ENSG00000095587|ENST00000357947|TLL2	ENSG00000095587|ENST00000357947|TLL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3343505859375	2	545.317432	1088.62031	0.1373	7.4874E-05	-0.84302	-0.00045971	-0.70571	-0.00038484	545.3167468209799	97.869	0.73416	97.869	97.331	98.065	0					120	79	2	0	0	0	0.25756	1	26213	26213		7.1017	0.90987	1	99968			9886	1452	5531	5531	12911	12911					0.07954478414194455
FSPRVRRAT	9	Unmodified	_FSPRVRRAT_					0	0	0		ENSG00000095587|ENST00000357947|TLL2	ENSG00000095587|ENST00000357947|TLL2	ENSG00000095587|ENST00000357947|TLL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	545.317432	1088.62031	0.59804	0.00032612	-1.5572	-0.00084916	-0.95915	-0.00052304	545.3162738239357	97.885	0.43703	97.878	97.485	97.922	-0.0068207	0.059295	-0.00055837	NaN	7.1017	66	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113310			9887	1452	5531	5531							0.07954478414194455
FSPSLSLSLF	10	Unmodified	_FSPSLSLSLF_					0	0	0			REV__nc|ENSG00000177800|Q5T7P6|TMEM78	REV__nc|ENSG00000177800|Q5T7P6|TMEM78	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.315673828125	2	549.297507	1096.58046	0.64175	0.00035251	0.49928	0.00027426	1.141	0.00062677	549.297940430848	64.147	0.54205	64.239	64.066	64.608	0.09288					31	19	2	0	0	0	0.33817	1	15899	15899		14.838	0	1	86423	+		9888	23105	5532	5532	12912	12912					0.03603493900254762
FSQFLSLLT	9	Unmodified	_FSQFLSLLT_					0	0	0			REV__ENSG00000155495|ENST00000285879|MAGEC1	REV__ENSG00000155495|ENST00000285879|MAGEC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2747192382812	2	528.292225	1054.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.095	1	80.157	79.657	80.657	0.061417								0	0	0	0.21009	1	20789	20789		19.257	1.1106	1		+		9889	16699	5533	5533	12913	12913					0.04479511245813228
FSQLYLYSF	9	Unmodified	_FSQLYLYSF_					0	0	0		ENSG00000090674|ENST00000264079|MCOLN1;ENST00000394321.9_1_19:7591427-7598678:+|nuORF	ENSG00000090674|ENST00000264079|MCOLN1	ENSG00000090674|ENST00000264079|MCOLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.8087768554688	2	584.289682	1166.56481	0.35614	0.00020809	-2.1621	-0.0012633	-1.806	-0.0010552	584.2885500528072	62.824	1.0239	62.824	62.316	63.34	0					83	37	3	0	0	0	0.2322	1	15373	15373		20.454	3.5113	1	315350			9890	1386	5534	5534	12914	12914					-0.011807926168103222
FSQMEKGRP	9	Unmodified	_FSQMEKGRP_					0	0	0		ENST00000515707.1_1_17:48712735-48713063:+|nuORF	ENST00000515707.1_1_17:48712735-48713063:+|nuORF	ENST00000515707.1_1_17:48712735-48713063:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.298095703125	2	540.268758	1078.52296	0.70942	0.00038328	-3.3217	-0.0017946	-2.6123	-0.0014114	540.2659839592762	32.606	0.25155	32.606	32.44	32.692	0					13	8	2	0	0	0	0.25526	1	6198	6198		7.9102	1.187	1	109630			9891	11430	5535	5535	12915	12915					-0.013156715769810035
FSQNSPFIV	9	Unmodified	_FSQNSPFIV_					0	0	0		ENSG00000256223|ENST00000248211|ZNF10	ENSG00000256223|ENST00000248211|ZNF10	ENSG00000256223|ENST00000248211|ZNF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7671508789062	2	519.766374	1037.5182	0.60971	0.00031691	0.50971	0.00026493	1.1194	0.00058184	519.7668152547552	66.128	1.2811	66.128	65.795	67.076	0					75	45	3	0	0	0	0.23767	1	16551	16551		18.146	1.0335	1	457230			9892	8624	5536	5536	12916	12916					0.0009376755187986419
FSQPVVLSF	9	Unmodified	_FSQPVVLSF_					0	0	0			REV__ENST00000216038.5_1_22:32783708-32783828:-|nuORF	REV__ENST00000216038.5_1_22:32783708-32783828:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2811279296875	2	512.279118	1022.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.058	1	76.112	75.612	76.612	0.053413								0	0	0	0.21971	1	19563	19563		16.149	2.2431	1		+		9893	19406	5537	5537	12917	12917					0.03331242074318652
FSQQQLQFP	9	Unmodified	_FSQQQLQFP_					0	0	0		nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;nc|ENSG00000157212|Q6ZW49-2|PAXIP1;ENSG00000157212|ENST00000404141|PAXIP1;ENST00000475066.1_1_7:154759501-154775093:-|nuORF	nc|ENSG00000157212|Q6ZW49-1|PAXIP1	nc|ENSG00000157212|Q6ZW49-1|PAXIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2516479492188	2	561.782556	1121.55056	0.2654	0.0001491	-0.86388	-0.00048531	-0.59848	-0.00033621	561.7819145191003	43.845	0.33829	43.929	43.765	44.103	0.083992					15	12	2	0	0	0	0.22061	1	9684	9684		18.146	4.2403	1	188960			9894	10703	5538	5538	12918	12918					-0.005354450451250159
FSQTYYLTC	9	Unmodified	_FSQTYYLTC_					0	0	0		ENSG00000196417|ENST00000396408|ZNF765	ENSG00000196417|ENST00000396408|ZNF765	ENSG00000196417|ENST00000396408|ZNF765	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.7855224609375	2	563.2497	1124.48485	0.29418	0.00016569	-2.5239	-0.0014216	-2.2297	-0.0012559	563.2481039084104	65.485	0.36764	65.485	65.293	65.66	0					20	12	2	0	0	0	0.24289	1	16378	16378		18.146	1.2041	1	129130			9895	7860	5539	5539	12919	12919					-0.07241602282306303
FSQWIKELLSL	11	Unmodified	_FSQWIKELLSL_					0	0	0			REV__ENST00000291574.8_1_21:45497625-45499446:+|nuORF	REV__ENST00000291574.8_1_21:45497625-45499446:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2587585449219	3	455.258856	1362.75474	-0.12914	-5.8792E-05	-0.62889	-0.00028631	-0.75803	-0.0003451	455.25867156922993	28.083	0.61878	28.079	27.793	28.411	-0.0042572					63	21	4	0	0	0	0.42246	1	4834	4834		8.2864	0.44039	1	562500	+		9896	19758	5540	5540	12920	12920					0.08787074325596222
FSQWIKELLSL	11	Unmodified	_FSQWIKELLSL_					0	0	0			REV__ENST00000291574.8_1_21:45497625-45499446:+|nuORF	REV__ENST00000291574.8_1_21:45497625-45499446:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.59326171875	3	455.258856	1362.75474	-0.23813	-0.00010841	-0.32004	-0.0001457	-0.55817	-0.00025411	455.2586745046772	28.036	0.64438	28.036	27.793	28.438	0.0004673					67	22	4	0	0	0	0.3871	1	4807	4807		12.929	0.072748	1	623370	+		9897	19758	5540	5540	12921	12921					0.08787074325596222
FSREESATSL	10	Unmodified	_FSREESATSL_					0	0	0		ENST00000546500.5_1_12:54680392-54680476:+|nuORF	ENST00000546500.5_1_12:54680392-54680476:+|nuORF	ENST00000546500.5_1_12:54680392-54680476:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.84033203125	2	563.772385	1125.53022	0.63479	0.00035788	-1.7474	-0.00098515	-1.1126	-0.00062727	564.2721395261859	50.782	1.4297	50.782	50.001	51.43	0					143	52	4	0	0	0	0.29038	1	11986	11986		18.146	1.9972	1	1072900			9898	11761	5541	5541	12922	12922					-0.027526604955710354
FSRQIEYFRSL	11	Unmodified	_FSRQIEYFRSL_					0	0	0		nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENSG00000100014|ENST00000314328|SPECC1L	nc|ENSG00000100014|Q69YQ0-2|SPECC1L	nc|ENSG00000100014|Q69YQ0-2|SPECC1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2703857421875	3	482.589376	1444.7463	0.32159	0.00015519	-1.7812	-0.00085958	-1.4596	-0.00070439	482.5885952164165	35.908	0.34401	35.908	35.773	36.117	0					20	12	2	0	0	0	0.33169	1	7227	7227		6.2344	0	1	142970			9899	1515	5542	5542	12923	12923					0.041715204089314284
FSRSVHLT	8	Unmodified	_FSRSVHLT_					0	0	0		ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.75946044921875	2	473.758884	945.503215	0.28868	0.00013676	0.93401	0.0004425	1.2227	0.00057926	473.7593433260266	19.672	0.83514	19.616	19.227	20.062	-0.055693					55	29	3	0	0	0	0.44569	1	2343	2343		7.2892	1.0834	1	165210			9900	7954	5543	5543	12924	12924					0.028283204745548574
FSSAMPLDP	9	Unmodified	_FSSAMPLDP_					0	0	0		chr2:34696396-34713579|307|49.86|0.04|10.24|+|0|TE_info:HERVH-int,HERVH-int_dup499,ERV1,LTR,donor,+,34694923,34696396|None,LINC01320|4;chr2:34696396-34710452|208|10.32|0.01|10.83|+|0|TE_info:HERVH-int,HERVH-int_dup499,ERV1,LTR,donor,+,34694923,34696396|None,LINC01320|4;HERVH-int_dup4392|chr11:117810273-117812670:+|1.0106195284198216|0.4419619859838813|1.19|535.0|41|3|sense;HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|60|3|sense	chr2:34696396-34713579|307|49.86|0.04|10.24|+|0|TE_info:HERVH-int,HERVH-int_dup499,ERV1,LTR,donor,+,34694923,34696396|None,LINC01320|4	chr2:34696396-34713579|307|49.86|0.04|10.24|+|0|TE_info:HERVH-int,HERVH-int_dup499,ERV1,LTR,donor,+,34694923,34696396|None,LINC01320|4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.72625732421875	2	482.725861	963.437169	0.29118	0.00014056	1.125	0.00054309	1.4162	0.00068365	482.72595628980287	75.198	0.51748	75.25	75.076	75.593	0.052368					37	18	3	0	0	0	0.24311	1	19294	19294		16.942	0	1	402940			9901	150	5544	5544	12925	12925					-0.04601256482499139
FSSARSASIW	10	Unmodified	_FSSARSASIW_					0	0	0			REV__ENST00000457147.1_1_10:75013703-75013874:+|nuORF	REV__ENST00000457147.1_1_10:75013703-75013874:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2921752929688	2	556.28018	1110.54581	0.6075	0.00033794	-0.23249	-0.00012933	0.37501	0.00020861	556.2799200444921	45.902	0.73549	45.902	45.64	46.375	0					45	26	2	0	0	0	0.27059	1	10415	10415		24.021	5.8742	1	2684900	+		9902	21178	5545	5545	12926	12926					-0.00504329187856456
FSSARSASIW	10	Unmodified	_FSSARSASIW_					0	0	0			REV__ENST00000457147.1_1_10:75013703-75013874:+|nuORF	REV__ENST00000457147.1_1_10:75013703-75013874:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2919921875	2	556.28018	1110.54581	0.40191	0.00022357	0.10505	5.844E-05	0.50696	0.00028201	556.2800410799734	45.612	0.81883	45.671	45.361	46.18	0.059834					77	28	4	0	0	0	0.27059	1	10338	10338		24.021	8.1734	1	2872200	+		9903	21178	5545	5545	12927	12927					-0.00504329187856456
FSSDEDDPGYS	11	Unmodified	_FSSDEDDPGYS_					0	0	0		nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1	nc|ENSG00000060749|Q2KHR3|QSER1	nc|ENSG00000060749|Q2KHR3|QSER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.2269897460938	2	609.725298	1217.43604	0.41046	0.00025027	0.84362	0.00051438	1.2541	0.00076465	609.7260323512694	31.748	0.89917	31.791	31.458	32.357	0.042366					70	31	3	0	0	0	0.44192	1	5929	5929		5.7319	0.43497	1	750500			9904	753	5546	5546	12928	12928					-0.16397844108360005
FSSDHLIEM	9	Oxidation (M)	_FSSDHLIEM(Oxidation (M))_		FSSDHLIEM(1)		FSSDHLIEM(110)	0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7449951171875	2	547.744782	1093.47501	0.55701	0.0003051	-0.067136	-3.6773E-05	0.48987	0.00026832	547.7446413792081	40.297	0.71643	40.297	40.024	40.74	0					56	25	3	0	0	0	0.0023784	2	8577	8577;8628		107.19	63.329	1	1288200			9905	12694	5547	5547	12929;12930	12929		973			-0.06798790287689371
FSSDHLIEM	9	Oxidation (M)	_FSSDHLIEM(Oxidation (M))_		FSSDHLIEM(1)		FSSDHLIEM(120)	0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7450561523438	2	547.744782	1093.47501	0.764	0.00041848	-0.40006	-0.00021913	0.36394	0.00019935	547.7445588823741	40.118	0.69463	40.211	39.943	40.637	0.092674					69	24	4	0	0	0	0.0015545	2	8515	8515;8568		115.69	71.834	1	1286800			9906	12694	5547	5547	12931;12932	12931		973			-0.06798790287689371
FSSDHLIEM	9	Oxidation (M)	_FSSDHLIEM(Oxidation (M))_		FSSDHLIEM(1)		FSSDHLIEM(120)	0	0	1		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7452392578125	2	547.744782	1093.47501	0.61556	0.00033717	-0.31053	-0.00017009	0.30503	0.00016708	547.7446764944775	40.05	0.67047	40.15	39.922	40.592	0.099407					70	23	4	0	0	0	0.0013036	2	8496	8496;8541		118.89	70.549	1	1285500			9907	12694	5547	5547	12933;12934	12933		973			-0.06798790287689371
FSSFSLQAF	9	Unmodified	_FSSFSLQAF_					0	0	0		chr12:68433371-68433854|444|25.2|0.98|4.69|-|0|LINC02384,LINC02384|1	chr12:68433371-68433854|444|25.2|0.98|4.69|-|0|LINC02384,LINC02384|1	chr12:68433371-68433854|444|25.2|0.98|4.69|-|0|LINC02384,LINC02384|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.766845703125	2	517.2531	1032.49165	0.21543	0.00011143	-2.2861	-0.0011825	-2.0707	-0.0010711	517.2509195473947	38.056	0.47739	38.154	37.871	38.348	0.097527					27	16	3	0	0	0	0.24289	1	7830	7830		13.042	0	1	139390			9908	135	5548	5548	12935	12935					-0.023299213394238905
FSSGHTILII	10	Unmodified	_FSSGHTILII_					0	0	0		ENST00000502346.1_1_5:82352385-82352481:-|nuORF	ENST00000502346.1_1_5:82352385-82352481:-|nuORF	ENST00000502346.1_1_5:82352385-82352481:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2950439453125	2	544.310949	1086.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.08	1	35.156	34.656	35.656	0.075306								0	0	0	0.34994	1	6987	6987		14.838	0.93222	1				9909	11272	5549	5549	12936	12936					0.06750602511442594
FSSIKSAKK	9	Unmodified	_FSSIKSAKK_					0	0	0			REV__ENSG00000170613|ENST00000302938|GARIN3	REV__ENSG00000170613|ENST00000302938|GARIN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.78790283203125	2	498.297842	994.581131	0.18866	9.4007E-05	-1.8512	-0.00092245	-1.6626	-0.00082845	498.29839309857056	33.658	0.57951	33.725	33.415	33.995	0.066704					45	20	3	0	0	0	0.24311	1	6628	6628		11.64	3.7301	1	260200	+		9910	17590	5550	5550	12937	12937					0.08362333339948691
FSSITKEIL	9	Unmodified	_FSSITKEIL_					0	0	0			REV__ENST00000464088.5_1_1:117057437-117078603:-|nuORF	REV__ENST00000464088.5_1_1:117057437-117078603:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2874755859375	2	519.297507	1036.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.858	1	89.949	89.449	90.449	0.090569								0	0	0	0.21726	1	23789	23789		16.942	2.104	1		+		9911	21260	5551	5551	12938	12938					0.06363493900244066
FSSLHTTLCA	10	Unmodified	_FSSLHTTLCA_					0	0	0		ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1;PANK1|p.I539Tfs*17|1|0.19|ENSG00000152782|chr10:89588770-89588773|TCTA/-|frameshift_variant;nc|ENSG00000152782|Q8TE04-3|PANK1;ENST00000461829.1_1_10:91359007-91371632:-|nuORF	ENSG00000152782|ENST00000307534|PANK1	ENSG00000152782|ENST00000307534|PANK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8338623046875	2	540.263142	1078.51173	0.57576	0.00031106	0.49469	0.00026726	1.0704	0.00057832	540.2633267325143	43.116	0.57443	43.193	42.826	43.401	0.077515					32	20	2	0	0	0	0.30079	1	9469	9469		20.454	5.6154	1	359260			9912	5040	5552	5552	12939	12939					-0.024384936711157934
FSSMLEYCKH	10	Unmodified	_FSSMLEYCKH_					0	0	0		ENSG00000121864|ENST00000496856|ZNF639	ENSG00000121864|ENST00000496856|ZNF639	ENSG00000121864|ENST00000496856|ZNF639	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5203857421875	3	415.519465	1243.53657	0.58553	0.0002433	1.2876	0.00053501	1.8731	0.00077831	415.5202290334091	50.013	0.88639	50.058	49.825	50.711	0.044891					92	32	5	0	0	0	0.36279	1	11581	11581		10.315	0	1	1534200			9913	3013	5553	5553	12940	12940					-0.07546181860061552
FSSPLPNQK	9	Unmodified	_FSSPLPNQK_					0	0	0			REV__ENSG00000164463|ENST00000296953|CREBRF	REV__ENSG00000164463|ENST00000296953|CREBRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.253662109375	2	509.271824	1016.5291	0.4052	0.00020636	-0.34681	-0.00017662	0.058386	2.9735E-05	509.27160908038525	45.05	0.4773	45.125	44.835	45.312	0.075047					33	17	3	0	0	0	0.2451	1	9939	9939		10.824	6.4947	1	192200	+		9914	17159	5554	5554	12941	12941					0.021491699261900976
FSSPPKGQ	8	Unmodified	_FSSPPKGQ_					0	0	0		ENSG00000164256|ENST00000296682|PRDM9;nc|ENSG00000126856|Q9NQW5-1|PRDM7	ENSG00000164256|ENST00000296682|PRDM9	ENSG00000164256|ENST00000296682|PRDM9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.23162841796875	2	424.21906	846.423567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.668	1	65.668	65.168	66.168	0								0	0	0	0.27914	1	16394	16394		32.117	5.7757	1				9915	5818	5555	5555	12942	12942					-0.005787461994145815
FSSPPLSL	8	Unmodified	_FSSPPLSL_					0	0	0		nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2317199707031	2	424.231636	846.448719	0.14719	6.2445E-05	0.010162	4.3111E-06	0.15736	6.6756E-05	424.23150197647584	65.656	0.80987	65.656	65.373	66.183	0					58	28	3	0	0	0	0.072895	1	16460	16460		67.344	6.9543	1	702430			9916	4824	5556	5556	12943	12943					0.019353086031628663
FSSPPLSL	8	Unmodified	_FSSPPLSL_					0	0	0		nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.2315673828125	2	424.231636	846.448719	-0.10317	-4.3768E-05	0.13227	5.6115E-05	0.029104	1.2347E-05	424.23154705351294	65.564	1.1431	65.653	65.38	66.523	0.088875					71	41	3	0	0	0	0.0059495	1	16354	16354		125.62	28.55	1	594120			9917	4824	5556	5556	12944	12944					0.019353086031628663
FSSPPLSL	8	Unmodified	_FSSPPLSL_					0	0	0		nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.23150634765625	2	424.231636	846.448719	0.12777	5.4205E-05	0.14119	5.9898E-05	0.26896	0.0001141	424.2315752811346	65.657	0.71902	65.645	65.398	66.117	-0.011337					58	25	3	0	0	0	0.0059495	2	16371	16371;16434		125.62	15.995	1	612730			9918	4824	5556	5556	12945;12946	12945					0.019353086031628663
FSSPSFVSI	9	Unmodified	_FSSPSFVSI_					0	0	0		RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80035400390625	2	485.74765	969.480748	0.45218	0.00021964	-0.87512	-0.00042509	-0.42294	-0.00020544	485.74708510682143	65.822	0.38649	65.81	65.586	65.972	-0.011337					16	13	2	0	0	0	0.19839	1	16398	16398		21.747	4.8044	1	154880			9919	8096	5557	5557	12947	12947					-0.00521323713712718
FSSQRSNHF	9	Unmodified	_FSSQRSNHF_					0	0	0		ENST00000373803.6_1_20:35350089-35350170:-|nuORF	ENST00000373803.6_1_20:35350089-35350170:-|nuORF	ENST00000373803.6_1_20:35350089-35350170:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3031616210938	2	555.259779	1108.50501	0.41083	0.00022812	-3.7301	-0.0020712	-3.3193	-0.0018431	555.2583158568292	54.164	0.78519	54.148	53.764	54.55	-0.015923					37	27	3	0	0	0	0.1854	1	12846	12846		25.399	4.9457	1	191040			9920	9877	5558	5558	12948	12948					-0.04490670507470895
FSSRFSFR	8	Unmodified	_FSSRFSFR_					0	0	0			REV__ENSG00000242852|ENST00000397732|ZNF709	REV__ENSG00000242852|ENST00000397732|ZNF709	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2748413085938	2	517.264333	1032.51411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.472	1	24.433	23.933	24.933	-0.038927								0	0	0	0.36169	1	3759	3759		9.3474	0.75416	1		+		9921	19188	5559	5559	12949	12949					-0.0008427715115431056
FSSSLQVGLF	10	Unmodified	_FSSSLQVGLF_					0	0	0		ENST00000525455.5_1_11:62530233-62533976:+|nuORF	ENST00000525455.5_1_11:62530233-62533976:+|nuORF	ENST00000525455.5_1_11:62530233-62533976:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8399047851562	2	542.787307	1083.56006	0.53952	0.00029285	0.093133	5.0552E-05	0.63265	0.0003434	543.2884300674029	52.702	0.24861	52.702	52.6	52.849	0					13	8	2	0	0	0	0.3156	1	12400	12400		10.824	7.2274	1	101860			9922	11538	5560	5560	12950	12950					0.02162323240418118
FSSSLQVGLF	10	Unmodified	_FSSSLQVGLF_					0	0	0		ENST00000525455.5_1_11:62530233-62533976:+|nuORF	ENST00000525455.5_1_11:62530233-62533976:+|nuORF	ENST00000525455.5_1_11:62530233-62533976:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8397827148438	2	542.787307	1083.56006	0.55771	0.00030272	0.11068	6.0077E-05	0.66839	0.00036279	543.2888916285608	52.806	0.34981	52.806	52.663	53.013	-0.00081253					15	12	2	0	0	0	0.31165	1	12398	12398		10.824	0	1	139080			9923	11538	5560	5560	12951	12951					0.02162323240418118
FSSTILGNFE	10	Unmodified	_FSSTILGNFE_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-10|HYDIN;nc|ENSG00000157423|Q4G0P3-8|HYDIN;nc|ENSG00000157423|Q4G0P3-5|HYDIN;nc|ENSG00000157423|Q4G0P3-6|HYDIN;HYDIN|p.P758Nfs*97|1|0.11|ENSG00000157423|chr16:71062273-71062274|-/AGTT|frameshift_variant	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2394409179688	2	557.774396	1113.53424	0.30825	0.00017194	-1.5977	-0.00089115	-1.2894	-0.00071922	557.7729535811973	65.614	0.34834	65.703	65.491	65.839	0.088882					18	12	2	0	0	0	0.29112	1	16352	16352		19.362	7.7216	1	138450			9924	5305	5561	5561	12952	12952					-0.017985710018365353
FSSYIDKPY	9	Unmodified	_FSSYIDKPY_					0	0	0			REV__ENSG00000196611|ENST00000315274|MMP1	REV__ENSG00000196611|ENST00000315274|MMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8036499023438	2	560.27149	1118.52843	0.67003	0.0003754	0.55733	0.00031226	1.2274	0.00068765	560.2708047232824	45.838	0.33745	45.838	45.666	46.003	0					25	11	3	0	0	0	0.25526	1	10257	10257		7.9102	0	1	332870	+		9925	18667	5562	5562	12953	12953					-0.02609669513526569
FSTFSHKTV	9	Unmodified	_FSTFSHKTV_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	nc|ENSG00000166557|Q9Y3Q3-2|TMED3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7560424804688	2	527.271824	1052.5291	0.79706	0.00042027	-1.4526	-0.0007659	-0.65551	-0.00034563	527.2711100247254	55.782	0.31398	55.853	55.675	55.989	0.070885					17	11	2	0	0	0	0.24311	1	13290	13290		11.64	0	1	150440			9926	6094;12819	5563	5563	12954	12954					0.004931699261760514
FSTHGRFEL	9	Unmodified	_FSTHGRFEL_					0	0	0			REV__ENST00000357736.8_1_17:79877633-79877984:-|nuORF	REV__ENST00000357736.8_1_17:79877633-79877984:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7848510742188	2	547.274898	1092.53524	-0.36697	-0.00020084	-1.1649	-0.00063751	-1.5318	-0.00083834	547.2743922884815	34.803	0.5551	34.881	34.561	35.116	0.077381					29	19	2	0	0	0	0.19747	1	6952	6952		24.021	8.1734	1	150630	+		9927	20223	5564	5564	12955	12955					-0.007323118422846164
FSTHGRFEL	9	Unmodified	_FSTHGRFEL_					0	0	0			REV__ENST00000357736.8_1_17:79877633-79877984:-|nuORF	REV__ENST00000357736.8_1_17:79877633-79877984:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	547.274898	1092.53524	-0.36697	-0.00020084	-1.1649	-0.00063751	-1.5318	-0.00083834	547.2743922884815	34.803	0.5551	34.881	34.561	35.116	0.077381	-0.0038766	-0.00014051	NaN	24.021	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150630	+		9928	20223	5564	5564							-0.007323118422846164
FSTKQKLLQ	9	Unmodified	_FSTKQKLLQ_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-8|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8370361328125	2	546.824224	1091.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.376	1	72.376	71.876	72.876	0								0	0	0	0.15136	1	18446	18446		34.402	3.7652	1				9929	3536	5565	5565	12956	12956					0.09174291402769086
FSTKQLTE	8	Unmodified	_FSTKQLTE_					0	0	0		ENSG00000128645|ENST00000331462|HOXD1	ENSG00000128645|ENST00000331462|HOXD1	ENSG00000128645|ENST00000331462|HOXD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7969665527344	2	477.250557	952.486562	0.42837	0.00020444	-0.65787	-0.00031397	-0.2295	-0.00010953	477.2517886265105	83.626	0.23145	83.703	83.594	83.826	0.077095					14	9	2	0	0	0	0.34337	1	21871	21871		5.2307	0	1	85925			9930	3384	5566	5566	12957	12957					0.008417747979365231
FSTMGRCYE	9	Unmodified	_FSTMGRCYE_					0	0	0			REV__TSPYL6|p.Y237Cfs*27|1|0.11|ENSG00000178021|chr2:54255436-54255442|TCCAGGT/-|frameshift_variant	REV__TSPYL6|p.Y237Cfs*27|1|0.11|ENSG00000178021|chr2:54255436-54255442|TCCAGGT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7848510742188	2	547.225702	1092.43685	-0.52297	-0.00028618	-0.3154	-0.00017259	-0.83837	-0.00045877	547.2256176732851	34.925	0.27428	35.002	34.893	35.167	0.077381					14	9	2	0	0	0	0.25526	1	6952	6952		7.9102	0	1	89162	+		9931	23345	5567	5567	12958	12958					-0.10566999474008298
FSTNPSLAK	9	Unmodified	_FSTNPSLAK_					0	0	0		nc|ENSG00000182333|P07098-2|LIPF;nc|ENSG00000182333|P07098-4|LIPF;ENSG00000182333|ENST00000238983|LIPF;nc|ENSG00000182333|P07098-3|LIPF	nc|ENSG00000182333|P07098-2|LIPF	nc|ENSG00000182333|P07098-2|LIPF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2476806640625	2	482.758549	963.502546	0.24323	0.00011742	-0.14702	-7.0973E-05	0.096212	4.6447E-05	482.7585100926904	32.87	0.66501	32.925	32.71	33.375	0.054371					42	23	3	0	0	0	0.29176	1	6260	6260		10.074	0.72649	1	595370			9932	7290	5568	5568	12959	12959					0.01933481034848228
FSTTGDYEVF	10	Unmodified	_FSTTGDYEVF_					0	0	0			REV__nc|ENSG00000174227|Q5H8A4-2|PIGG	REV__nc|ENSG00000174227|Q5H8A4-2|PIGG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.255859375	2	583.256037	1164.49752	0.30741	0.0001793	0.034825	2.0312E-05	0.34223	0.00019961	583.2559261445432	98.099	0.52605	98.092	97.807	98.334	-0.0068283					116	59	3	0	0	0	0.29978	1	26261	26261		20.454	0	1	549020	+		9933	17819	5569	5569	12960	12960					-0.07814867618435528
FSTTGDYEVF	10	Unmodified	_FSTTGDYEVF_					0	0	0			REV__nc|ENSG00000174227|Q5H8A4-2|PIGG	REV__nc|ENSG00000174227|Q5H8A4-2|PIGG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	583.256037	1164.49752	-0.039771	-2.3197E-05	0.51355	0.00029953	0.47378	0.00027634	583.2561757686963	97.989	0.50209	97.989	97.75	98.252	0	-0.033511	0.00035237	NaN	20.454	94	56	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218740	+		9934	17819	5569	5569							-0.07814867618435528
FSTTGDYEVF	10	Unmodified	_FSTTGDYEVF_					0	0	0			REV__nc|ENSG00000174227|Q5H8A4-2|PIGG	REV__nc|ENSG00000174227|Q5H8A4-2|PIGG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	583.256037	1164.49752	0.094305	5.5004E-05	0.19936	0.00011628	0.29367	0.00017128	583.2559591558919	97.926	0.56126	97.988	97.766	98.327	0.061516	-0.035316	-1.4139E-05	NaN	20.454	113	67	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358210	+		9935	17819	5569	5569							-0.07814867618435528
FSTVTSTVK	9	Unmodified	_FSTVTSTVK_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.26641845703125	2	485.266207	968.517862	0.60575	0.00029395	-0.40798	-0.00019798	0.19777	9.597E-05	485.26606024612556	37.23	1.8973	37.23	36.673	38.571	0					184	67	5	0	0	0	0.047483	1	7643	7643		53.833	3.8998	1	13799000			9936	7334	5570	5570	12961	12961					0.032343478320512986
FSTVTSTVK	9	Unmodified	_FSTVTSTVK_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.26641845703125	2	485.266207	968.517862	0.31086	0.00015085	-0.080871	-3.9244E-05	0.22999	0.0001116	485.2662150711078	37.097	2.5192	37.184	36.207	38.726	0.08741					229	91	5	0	0	0	0.069366	2	7597	7597;7648		45.7	5.7499	1	14525000			9937	7334	5570	5570	12962;12963	12962					0.032343478320512986
FSTVTSTVK	9	Unmodified	_FSTVTSTVK_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2662048339844	2	485.266207	968.517862	0.46657	0.00022641	-0.21771	-0.00010565	0.24885	0.00012076	485.2661424210842	37.088	2.2077	37.181	36.279	38.486	0.093014					200	79	5	0	0	0	0.10059	1	7550	7550		38.176	3.7738	1	15537000			9938	7334	5570	5570	12964	12964					0.032343478320512986
FSVAGVHTV	9	Unmodified	_FSVAGVHTV_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.9345703125	2	458.747985	915.481417	0.1774	8.138E-05	0.56179	0.00025772	0.73919	0.0003391	458.74804210408445	44.82	0.27617	44.888	44.817	45.093	0.068569					11	9	2	0	0	0	0.16284	1	9966	9966		30.637	5.2372	1	82346			9939	1129	5571	5571	12965	12965					0.02029515725996589
FSVAGVHTV	9	Unmodified	_FSVAGVHTV_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2693786621094	2	458.747985	915.481417	0.3377	0.00015492	0.30067	0.00013793	0.63837	0.00029285	458.748148953128	44.858	0.26644	44.933	44.835	45.101	0.075047					10	9	2	0	0	0	0.16284	1	9962	9962		30.637	14.789	1	102910			9940	1129	5571	5571	12966	12966					0.02029515725996589
FSVDQLMEL	9	Unmodified	_FSVDQLMEL_					0	0	0		ENSG00000163382|ENST00000368235|NAXE;ENST00000467374.1_1_1:156561697-156562477:+|nuORF	ENSG00000163382|ENST00000368235|NAXE	ENSG00000163382|ENST00000368235|NAXE	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2647094726562	2	541.26535	1080.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.735	1	92.824	92.324	93.324	0.089195								0	0	0	0.24715	1	24673	24673		7.2892	0.93513	1				9941	5673	5572	5572	12967	12967					-0.02089029248213592
FSVDQLMEL	9	Unmodified	_FSVDQLMEL_					0	0	0		ENSG00000163382|ENST00000368235|NAXE;ENST00000467374.1_1_1:156561697-156562477:+|nuORF	ENSG00000163382|ENST00000368235|NAXE	ENSG00000163382|ENST00000368235|NAXE	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.26416015625	2	541.26535	1080.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.848	1	92.849	92.349	93.349	0.00046539								0	0	0	0.24715	1	24705	24705		7.2892	0	1				9942	5673	5572	5572	12968	12968					-0.02089029248213592
FSVDSPDSL	9	Unmodified	_FSVDSPDSL_					0	0	0		ENSG00000143878|ENST00000272233|RHOB	ENSG00000143878|ENST00000272233|RHOB	ENSG00000143878|ENST00000272233|RHOB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2535095214844	2	483.724372	965.434192	0.39843	0.00019273	0.3009	0.00014555	0.69933	0.00033828	483.72452192363176	44.959	0.40432	44.959	44.771	45.175	0					19	14	2	0	0	0	0.2451	1	10033	10033		3.5965	0	1	158820			9943	4554	5573	5573	12969	12969					-0.049908083356626776
FSVDSPDSL	9	Unmodified	_FSVDSPDSL_					0	0	0		ENSG00000143878|ENST00000272233|RHOB	ENSG00000143878|ENST00000272233|RHOB	ENSG00000143878|ENST00000272233|RHOB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2535705566406	2	483.724372	965.434192	0.34801	0.00016834	0.97395	0.00047112	1.322	0.00063946	483.7244991494445	44.727	0.3252	44.796	44.627	44.952	0.068569					19	11	3	0	0	0	0.2451	1	9941	9941		15.847	0	1	171530			9944	4554	5573	5573	12970	12970					-0.049908083356626776
FSVERELQ	8	Unmodified	_FSVERELQ_					0	0	0		REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant;REPS2|p.D555Gfs*14|1|0.67|ENSG00000169891|chrX:17133904-17133905|-/A|frameshift_variant;nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2737731933594	2	504.261456	1006.50836	0.30352	0.00015305	1.6288	0.00082133	1.9323	0.00097438	504.2622712862916	43.471	0.50626	43.471	43.206	43.713	0					38	18	3	0	0	0	0.32789	1	9535	9535		27.629	0.74515	1	259660			9945	6396	5574	5574	12971	12971					0.005365795465081646
FSVERELQ	8	Unmodified	_FSVERELQ_					0	0	0		REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant;REPS2|p.D555Gfs*14|1|0.67|ENSG00000169891|chrX:17133904-17133905|-/A|frameshift_variant;nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.27362060546875	2	504.261456	1006.50836	0.17408	8.7781E-05	1.0712	0.00054016	1.2453	0.00062794	504.26190314624847	43.069	0.47818	43.153	42.819	43.297	0.083996					25	17	2	0	0	0	0.32789	1	9435	9435		27.629	3.6082	1	266660			9946	6396	5574	5574	12972	12972					0.005365795465081646
FSVESQYIF	9	Unmodified	_FSVESQYIF_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.7420654296875	2	560.27149	1118.52843	0.29773	0.00016681	-0.88409	-0.00049533	-0.58637	-0.00032852	560.2710304318275	67.773	0.65102	67.773	67.45	68.101	0					51	22	3	0	0	0	0.16284	1	17011	17011		37.974	1.847	1	507890	+		9947	17179	5575	5575	12973	12973					-0.02609669513526569
FSVFNRVNE	9	Unmodified	_FSVFNRVNE_					0	0	0			REV__ENST00000586588.5_1_19:10244345-10254710:-|nuORF	REV__ENST00000586588.5_1_19:10244345-10254710:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2924194335938	2	556.28018	1110.54581	0.42861	0.00023843	0.089035	4.9529E-05	0.51765	0.00028796	556.2800267145226	45.613	0.84364	45.678	45.33	46.174	0.065048					85	30	4	0	0	0	0.15219	1	10329	10329		30.637	12.502	1	2541900	+		9948	15482	5576	5576	12974	12974					-0.00504329187856456
FSVIGAREE	9	Unmodified	_FSVIGAREE_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000511345.5_1_4:845337-845877:-|nuORF;ENST00000515868.5_1_4:845337-862348:-|nuORF;ENST00000509566.1_1_4:844107-866085:-|nuORF	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2740173339844	2	504.261456	1006.50836	0.30352	0.00015305	1.6288	0.00082133	1.9323	0.00097438	504.2622712862916	43.471	0.50626	43.471	43.206	43.713	0					38	18	3	0	0	0	0.25112	1	9584	9584		16.149	0.30192	1	259660			9949	7088	5577	5577	12975	12975					0.005365795465195333
FSVKGKKAW	9	Unmodified	_FSVKGKKAW_					0	0	0		ENST00000505045.1_1_5:26903562-26988455:-|nuORF	ENST00000505045.1_1_5:26903562-26988455:-|nuORF	ENST00000505045.1_1_5:26903562-26988455:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3123168945312	2	525.808377	1049.6022	0.13249	6.9665E-05	1.2099	0.00063619	1.3424	0.00070586	525.8061602112074	13.691	0.55981	13.625	13.389	13.949	-0.066068					66	19	5	0	0	0	0.25323	1	501	501		10.074	2.7847	1	472800			9950	11308	5578	5578	12976	12976					0.07938343439445816
FSVKTHIF	8	Unmodified	_FSVKTHIF_					0	0	0		ENSG00000198633|ENST00000433050|ZNF534;nc|ENSG00000198633|Q76KX8|ZNF534	ENSG00000198633|ENST00000433050|ZNF534	ENSG00000198633|ENST00000433050|ZNF534	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2652282714844	2	489.774003	977.533452	0.35292	0.00017285	2.9531	0.0014463	3.306	0.0016192	489.7755408689264	82.045	0.42796	82.045	81.769	82.197	0					30	15	3	0	0	0	0.41758	1	21402	21402		16.942	3.4344	1	469720			9951	8097	5579	5579	12977	12977					0.04378679139756514
FSVMMPWLWTA	11	Unmodified	_FSVMMPWLWTA_					0	0	0		ENST00000380443.5_1_20:2843179-2847217:+|nuORF	ENST00000380443.5_1_20:2843179-2847217:+|nuORF	ENST00000380443.5_1_20:2843179-2847217:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.793212890625	3	456.887489	1367.64064	0.28834	0.00013174	0.91017	0.00041585	1.1985	0.00054759	457.22195231106423	32.14	0.18745	32.14	32.064	32.251	0					10	6	2	0	0	0	0.33287	1	6099	6099		1.3296	0	1	72590			9952	9984	5580	5580	12978	12978					-0.028478550325417018
FSVPRYLLNL	10	Unmodified	_FSVPRYLLNL_					0	0	0			REV__KIAA1549L|p.S551Hfs*97|1|0.3|ENSG00000110427|chr11:33544103-33544103|C/-|frameshift_variant	REV__KIAA1549L|p.S551Hfs*97|1|0.3|ENSG00000110427|chr11:33544103-33544103|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2237854003906	3	407.904524	1220.69174	-0.34078	-0.00013901	-0.30646	-0.00012501	-0.64724	-0.00026401	407.9043682383364	13.953	0.23297	13.887	13.774	14.007	-0.066068					12	7	2	0	0	0	0.32051	1	574	574		3.8763	0.55669	1	34807	+		9953	22773	5581	5581	12979	12979					0.09022553328190952
FSVPRYLLNL	10	Unmodified	_FSVPRYLLNL_					0	0	0			REV__KIAA1549L|p.S551Hfs*97|1|0.3|ENSG00000110427|chr11:33544103-33544103|C/-|frameshift_variant	REV__KIAA1549L|p.S551Hfs*97|1|0.3|ENSG00000110427|chr11:33544103-33544103|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	407.904524	1220.69174	-0.39147	-0.00015968	-0.71695	-0.00029245	-1.1084	-0.00045213	407.90423684439935	13.908	0.19847	13.908	13.794	13.992	0	0.01063	-0.00039496	NaN	3.8763	16	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38551	+		9954	22773	5581	5581							0.09022553328190952
FSVSAVHSSP	10	Unmodified	_FSVSAVHSSP_					0	0	0		ENST00000375571.5_1_20:31437522-31437645:+|nuORF	ENST00000375571.5_1_20:31437522-31437645:+|nuORF	ENST00000375571.5_1_20:31437522-31437645:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.30584716796875	2	509.253631	1016.49271	0.41669	0.0002122	2.655	0.0013521	3.0717	0.0015643	509.25557693690604	83.049	0.55864	83.122	82.899	83.458	0.073097					30	20	3	0	0	0	0.30586	1	21720	21720		19.257	2.1441	1	144250			9955	9911	5582	5582	12980	12980					-0.014877069705221402
FSVSKLKGPF	10	Unmodified	_FSVSKLKGPF_					0	0	0			REV__nc|ENSG00000103310|Q05996-2|ZP2	REV__nc|ENSG00000103310|Q05996-2|ZP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3032836914062	2	555.321317	1108.62808	0.52724	0.00029279	3.2554	0.0018078	3.7826	0.0021006	555.3232089473734	53.585	0.80311	53.585	53.493	54.296	0					37	29	2	0	0	0	0.31165	1	12801	12801		10.824	7.2274	1	323610	+		9956	14363	5583	5583	12981	12981					0.07811192891063001
FSWCLFFF	8	Unmodified	_FSWCLFFF_					0	0	0			REV__Harlequin-int_dup373|chr10:84170978-84171612:-|2.1942972251223907|0.2294773950638092|3.26|500.0|34|3|anti-sense	REV__Harlequin-int_dup373|chr10:84170978-84171612:-|2.1942972251223907|0.2294773950638092|3.26|500.0|34|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7526245117188	2	548.751682	1095.48881	0.66913	0.00036718	0.94621	0.00051923	1.6153	0.00088642	548.7521137938327	83.222	0.7879	83.201	82.975	83.763	-0.020584					72	32	3	0	0	0	0.39956	1	21803	21803		19.439	2.3261	1	762940	+		9957	22717	5584	5584	12982	12982					-0.0551146799793969
FSWEWSRR	8	Unmodified	_FSWEWSRR_					0	0	0		ENST00000429642.1_3_10:1094229-1094346:-|nuORF	ENST00000429642.1_3_10:1094229-1094346:-|nuORF	ENST00000429642.1_3_10:1094229-1094346:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3346557617188	2	577.280515	1152.54648	0.25826	0.00014909	0.29471	0.00017013	0.55297	0.00031922	577.2807816909843	70.102	0.49825	70.08	69.858	70.356	-0.022087					39	17	3	0	0	0	0.34131	1	17702	17702		7.9102	7.9102	1	279300			9958	10454	5585	5585	12983	12983					-0.023694897481618682
FSWPASHLH	9	Unmodified	_FSWPASHLH_					0	0	0		ENST00000528706.5_1_11:117279912-117282881:+|nuORF	ENST00000528706.5_1_11:117279912-117282881:+|nuORF	ENST00000528706.5_1_11:117279912-117282881:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.9315185546875	2	541.264333	1080.51411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.617	1	41.714	41.214	42.214	0.096626								0	0	0	0.23091	1	8979	8979		12.532	3.1841	1				9959	11587	5586	5586	12984	12984					-0.022922771511503015
FSWRSILT	8	Unmodified	_FSWRSILT_					0	0	0		ENSG00000181450|ENST00000343776|ZNF678	ENSG00000181450|ENST00000343776|ZNF678	ENSG00000181450|ENST00000343776|ZNF678	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2928466796875	2	505.276909	1008.53927	0.48315	0.00024412	-0.53065	-0.00026813	-0.047507	-2.4004E-05	505.2764707094177	87.418	0.98759	87.418	86.883	87.87	0					76	44	2	0	0	0	0.34167	1	22949	22949		11.64	2.2572	1	78102			9960	7235	5587	5587	12985	12985					0.03533777651421133
FSWRSILT	8	Unmodified	_FSWRSILT_					0	0	0		ENSG00000181450|ENST00000343776|ZNF678	ENSG00000181450|ENST00000343776|ZNF678	ENSG00000181450|ENST00000343776|ZNF678	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	505.276909	1008.53927	0.36642	0.00018514	-0.11722	-5.9226E-05	0.24921	0.00012592	505.2767592371559	87.722	0.80757	87.809	87.191	87.998	0.08709	0.19574	0.00025777	NaN	11.64	60	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109550			9961	7235	5587	5587							0.03533777651421133
FSWVDSATTF	10	Unmodified	_FSWVDSATTF_					0	0	0			REV__ENSG00000146904|ENST00000275815|EPHA1	REV__ENSG00000146904|ENST00000275815|EPHA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.76611328125	2	580.766571	1159.51859	0.49877	0.00028967	-0.7528	-0.0004372	-0.25403	-0.00014753	581.2676759665204	83.36	0.41994	83.341	83.184	83.604	-0.019012					35	16	3	0	0	0	0.3641	1	21793	21793		10.074	2.7847	1	228630	+		9962	16362	5588	5588	12986	12986					-0.054788575189149924
FSWVDSATTF	10	Unmodified	_FSWVDSATTF_					0	0	0			REV__ENSG00000146904|ENST00000275815|EPHA1	REV__ENSG00000146904|ENST00000275815|EPHA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	580.766571	1159.51859	0.55802	0.00032408	-0.55733	-0.00032368	0.00068657	3.9873E-07	580.7662274448813	83.384	0.41394	83.384	83.174	83.588	0	0.017727	0.00017869	NaN	10.074	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285360	+		9963	16362	5588	5588							-0.054788575189149924
FSWVDSATTF	10	Unmodified	_FSWVDSATTF_					0	0	0			REV__ENSG00000146904|ENST00000275815|EPHA1	REV__ENSG00000146904|ENST00000275815|EPHA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	580.766571	1159.51859	0.45092	0.00026188	-0.96815	-0.00056227	-0.51723	-0.00030039	580.7659090646371	83.302	0.45834	83.375	83.106	83.564	0.07309	0.0079492	-0.00029849	NaN	10.074	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170790	+		9964	16362	5588	5588							-0.054788575189149924
FSWVDSATTF	10	Unmodified	_FSWVDSATTF_					0	0	0			REV__ENSG00000146904|ENST00000275815|EPHA1	REV__ENSG00000146904|ENST00000275815|EPHA1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	580.766571	1159.51859	0.49877	0.00028967	-0.7528	-0.0004372	-0.25403	-0.00014753	581.2676759665204	83.36	0.41994	83.341	83.184	83.604	-0.019012	-0.025676	-4.8354E-05	NaN	10.074	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228630	+		9965	16362	5588	5588							-0.054788575189149924
FSYGRALQA	9	Unmodified	_FSYGRALQA_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000136872|ENST00000647789|ALDOB;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.349853515625	2	506.764166	1011.51378	0.13705	6.9454E-05	0.13979	7.084E-05	0.27684	0.00014029	506.7641093773155	41.258	0.42685	41.258	40.986	41.413	0					32	13	3	0	0	0	0.22674	1	8897	8897		22.736	5.794	1	367490			9966	4896;2236	5589	5589	12987	12987					0.008483031289756582
FSYGTYEVHF	10	Unmodified	_FSYGTYEVHF_					0	0	0			REV__ENST00000507994.1_1_4:100738070-100784201:+|nuORF	REV__ENST00000507994.1_1_4:100738070-100784201:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.4917907714844	3	417.188989	1248.54514	0.40038	0.00016703	-0.48995	-0.0002044	-0.089572	-3.7368E-05	417.18871324682107	48.006	0.36732	48.049	47.926	48.294	0.04332					21	13	2	0	0	0	0.32033	1	10928	10928		2.086	0	1	388670	+		9967	13722	5590	5590	12988	12988					-0.06919168627587169
FSYHRRQRL	9	Unmodified	_FSYHRRQRL_					0	0	0			REV__ENSG00000157578|ENST00000288350|LCA5L	REV__ENSG00000157578|ENST00000288350|LCA5L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	631.3463745117188	2	631.846887	1261.67922	0.0017205	1.0871E-06	2.1041	0.0013294	2.1058	0.0013305	631.8484803808294	25.592	0.27985	25.536	25.341	25.62	-0.055931					13	9	2	0	0	0	0.25622	1	4115	4115		1.6526	0	1	94707	+		9968	16789	5591	5591	12989	12989					0.05884954708517398
FSYIVIKN	8	Unmodified	_FSYIVIKN_					0	0	0		nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.26361083984375	2	492.28166	982.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.015	1	59.015	58.515	59.515	0								0	0	0	0.33432	1	14343	14343		21.747	2.3076	1				9969	12958	5592	5592	12990	12990					0.05679545936936847
FSYIVIKN	8	Unmodified	_FSYIVIKN_					0	0	0		nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.26373291015625	2	492.28166	982.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.83	1	58.921	58.421	59.421	0.091301								0	0	0	0.30279	1	14283	14283		28.487	9.0478	1				9970	12958	5592	5592	12991	12991					0.05679545936936847
FSYLLTTIFY	10	Unmodified	_FSYLLTTIFY_					0	0	0			REV__nc|ENSG00000169490|Q9BX73-2|TM2D2	REV__nc|ENSG00000169490|Q9BX73-2|TM2D2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.23248291015625	3	423.225152	1266.65363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.665	1	48.665	48.165	49.165	0								0	0	0	0.36386	1	11153	11153		8.9762	0.22446	1		+		9971	17519	5593	5593	12992	12992					0.03096622622842915
FSYNVLKL	8	Unmodified	_FSYNVLKL_					0	0	0			REV__ENST00000487319.1_1_7:140048309-140048561:-|nuORF	REV__ENST00000487319.1_1_7:140048309-140048561:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.26373291015625	2	492.28166	982.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.172	1	59.172	58.672	59.672	0								0	0	0	0.33122	1	14391	14391		23.148	0	1		+		9972	16794	5594	5594	12993	12993					0.05679545936936847
FSYPAGTEL	9	Unmodified	_FSYPAGTEL_					0	0	0		ENST00000360222.8_1_19:14857708-14876689:-|nuORF;nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-6|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;ENSG00000127507|ENST00000315576|ADGRE2	ENST00000360222.8_1_19:14857708-14876689:-|nuORF	ENST00000360222.8_1_19:14857708-14876689:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.26373291015625	2	492.737283	983.460012	0.3018	0.00014871	0.03568	1.7581E-05	0.33748	0.00016629	492.7372632588067	59.171	0.56478	59.171	58.968	59.533	0					49	19	3	0	0	0	0.0063774	1	14391	14391		96.285	69.401	1	402760			9973	3323	5595	5595	12994	12994					-0.03237914093381278
FSYPAGTEL	9	Unmodified	_FSYPAGTEL_					0	0	0		ENST00000360222.8_1_19:14857708-14876689:-|nuORF;nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-6|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;ENSG00000127507|ENST00000315576|ADGRE2	ENST00000360222.8_1_19:14857708-14876689:-|nuORF	ENST00000360222.8_1_19:14857708-14876689:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2635803222656	2	492.737283	983.460012	0.38056	0.00018752	-0.14806	-7.2952E-05	0.2325	0.00011456	492.73722025384836	59.002	0.61222	59.093	58.875	59.488	0.091301					36	21	2	0	0	0	0.0031412	1	14338	14338		108	108	1	378890			9974	3323	5595	5595	12995	12995					-0.03237914093381278
FSYPAGTEL	9	Unmodified	_FSYPAGTEL_					0	0	0		ENST00000360222.8_1_19:14857708-14876689:-|nuORF;nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-6|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;ENSG00000127507|ENST00000315576|ADGRE2	ENST00000360222.8_1_19:14857708-14876689:-|nuORF	ENST00000360222.8_1_19:14857708-14876689:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2637939453125	2	492.737283	983.460012	0.45366	0.00022354	-0.074698	-3.6807E-05	0.37896	0.00018673	492.7372916793164	59.124	0.56723	59.109	58.86	59.427	-0.014267					36	19	2	0	0	0	0.030157	1	14369	14369		68.081	42.681	1	406360			9975	3323	5595	5595	12996	12996					-0.03237914093381278
FSYRSPDVGY	10	Unmodified	_FSYRSPDVGY_					0	0	0		CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant;CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant;CUBN|p.K3401Rfs*11|1|0.02|ENSG00000107611|chr10:16835174-16835175|-/TTTTGAATGATTCC|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN;CUBN|p.G596Kfs*18|1|0.06|ENSG00000107611|chr10:17088325-17088326|-/AACAAAGATTACCTTGAGGTAAATAATTATATTT|frameshift_variant;CUBN|p.G596Afs*27|1|0.06|ENSG00000107611|chr10:17088324-17088325|-/TG|frameshift_variant	CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant	CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.7627563476562	2	595.77747	1189.54039	0.70347	0.00041911	-0.39869	-0.00023753	0.30478	0.00018158	595.7771525188164	58.607	0.47447	58.593	58.331	58.806	-0.014267					39	16	3	0	0	0	0.29092	1	14194	14194		21.537	2.28	1	763450			9976	249	5596	5596	12997	12997					-0.04680052770322618
FSYSDLRKF	9	Unmodified	_FSYSDLRKF_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.8106079101562	2	581.798206	1161.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.615	1	54.678	54.178	55.178	0.063202								0	0	0	0.22065	1	12983	12983		15.847	0	1				9977	6752	5597	5597	12998	12998					0.007531279889917641
FSYYLGETY	9	Unmodified	_FSYYLGETY_					0	0	0			REV__KCNK5|p.I191T|1|0.3|ENSG00000164626|chr6:39194231-39194231|A/G|missense_variant	REV__KCNK5|p.I191T|1|0.3|ENSG00000164626|chr6:39194231-39194231|A/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7569580078125	2	571.755672	1141.49679	0.24814	0.00014188	1.5266	0.00087286	1.7748	0.0010147	571.7566446221595	31.787	0.96444	31.787	31.476	32.44	0					59	34	2	0	0	0	0.22188	1	6083	6083		20.454	3.5113	1	446910	+		9978	22772	5598	5598	12999	12999					-0.06829662267455205
FSYYTALYD	9	Unmodified	_FSYYTALYD_					0	0	0			REV__nc|ENSG00000241644|O95050-2|INMT	REV__nc|ENSG00000241644|O95050-2|INMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7571411132812	2	571.755672	1141.49679	0.28346	0.00016207	1.8114	0.0010357	2.0949	0.0011978	571.756525429656	31.873	0.57822	31.914	31.772	32.351	0.040991					34	19	2	0	0	0	0.22188	1	6017	6017		20.454	3.3407	1	642560	+		9979	19178	5599	5599	13000	13000					-0.06829662267477943
FTAGAFSDHMA	11	Unmodified	_FTAGAFSDHMA_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.2333984375	2	577.750398	1153.48624	0.27946	0.00016146	0.1705	9.8508E-05	0.44996	0.00025997	577.7503270829887	31.87	0.64021	31.87	31.667	32.307	0					33	22	2	0	0	0	0.39234	1	6035	6035		12.241	1.4167	1	488260			9980	626	5600	5600	13001	13001					-0.08435968193543886
FTAHCPGPSF	10	Unmodified	_FTAHCPGPSF_					0	0	0			REV__ENST00000307662.4_1_5:150037325-150037448:+|nuORF	REV__ENST00000307662.4_1_5:150037325-150037448:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.751220703125	2	532.236927	1062.4593	0.29727	0.00015822	0.32099	0.00017084	0.61826	0.00032906	532.2375172901878	64.945	0.92387	64.933	64.606	65.53	-0.01133					78	33	4	0	0	0	0.30586	1	16167	16167		19.257	1.1106	1	532120	+		9981	19870	5601	5601	13002	13002					-0.06943032014078199
FTAHCPGPSF	10	Unmodified	_FTAHCPGPSF_					0	0	0			REV__ENST00000307662.4_1_5:150037325-150037448:+|nuORF	REV__ENST00000307662.4_1_5:150037325-150037448:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	532.236927	1062.4593	0.39079	0.00020799	0.81303	0.00043272	1.2038	0.00064072	532.237376250859	64.918	0.64567	64.918	64.647	65.293	0	0.0028124	0.0001431	NaN	19.257	57	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	562490	+		9982	19870	5601	5601							-0.06943032014078199
FTALEMSSIL	10	Unmodified	_FTALEMSSIL_					0	0	0		ENSG00000223601|ENST00000422359|EBLN1	ENSG00000223601|ENST00000422359|EBLN1	ENSG00000223601|ENST00000422359|EBLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7393798828125	2	556.288825	1110.5631	0.64552	0.00035909	-0.68793	-0.00038269	-0.042419	-2.3597E-05	556.2898533460778	37.114	0.38305	37.114	36.902	37.285	0					20	13	2	0	0	0	0.31358	1	7585	7585		13.906	2.2658	1	129130			9983	8437	5602	5602	13003	13003					0.01223830302933493
FTAPSTVGK	9	Unmodified	_FTAPSTVGK_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2479248046875	2	454.247818	906.481082	0.26506	0.0001204	0.24725	0.00011231	0.51231	0.00023271	454.24781290373494	29.024	0.79244	29.024	28.699	29.492	0					70	28	4	0	0	0	0.04299	2	5131	5131;5176		55.503	15.545	1	1348400			9984	4330	5603	5603	13004;13005	13004					0.02410096006144613
FTAPSTVGK	9	Unmodified	_FTAPSTVGK_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2479248046875	2	454.247818	906.481082	0.16954	7.7012E-05	0.2529	0.00011488	0.42244	0.00019189	454.24783003202896	28.958	0.94766	28.961	28.696	29.644	0.0025387					63	32	3	0	0	0	0.017549	2	5118	5118;5165		67.838	19.492	1	1369300			9985	4330	5603	5603	13006;13007	13006					0.02410096006144613
FTAPSTVGK	9	Unmodified	_FTAPSTVGK_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2478942871094	2	454.247818	906.481082	0.015423	7.006E-06	0.46776	0.00021248	0.48318	0.00021948	454.24790396515357	28.982	0.95431	28.996	28.699	29.653	0.013474					68	33	4	0	0	0	0.0079761	2	5111	5111;5161		82.529	34.183	1	1354300			9986	4330	5603	5603	13008;13009	13008					0.02410096006144613
FTATDKYYL	9	Unmodified	_FTATDKYYL_					0	0	0			REV__CON__P17690	REV__CON__P17690	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2797241210938	2	561.279315	1120.54408	0.59818	0.00033575	0.4149	0.00023287	1.0131	0.00056862	561.2795470930192	20.593	1.1586	20.483	19.933	21.091	-0.11003					108	41	4	0	0	0	0.33276	1	2661	2661		3.9444	3.9444	1	752150	+	+	9987	13255	5604	5604	13010	13010					-0.011373829964668403
FTCEECGSIF	10	Unmodified	_FTCEECGSIF_					0	0	0		ENSG00000131127|ENST00000240499|ZNF141	ENSG00000131127|ENST00000240499|ZNF141	ENSG00000131127|ENST00000240499|ZNF141	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.83154296875	2	568.225368	1134.43618	0.23915	0.00013589	0.047473	2.6975E-05	0.28662	0.00016286	568.2252565657284	69.685	0.44196	69.751	69.579	70.021	0.06604					23	15	2	0	0	0	0.31165	1	17646	17646		6.7232	2.3939	1	143040			9988	3546	5605	5605	13011	13011					-0.12565838913701555
FTCWLKSTYF	10	Unmodified	_FTCWLKSTYF_					0	0	0			REV__ENSG00000198610|ENST00000263126|AKR1C4	REV__ENSG00000198610|ENST00000263126|AKR1C4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.7066040039062	2	648.310092	1294.60563	0.12495	8.1009E-05	4.2972	0.0027859	4.4221	0.0028669	648.3119665806495	97.768	0.22945	97.768	97.645	97.874	0					34	24	2	0	0	0	0.31581	1	26119	26119		11.495	2.5185	1	47845	+		9989	18839	5606	5606	13012	13012					-0.029887745688256473
FTCWLKSTYF	10	Unmodified	_FTCWLKSTYF_					0	0	0			REV__ENSG00000198610|ENST00000263126|AKR1C4	REV__ENSG00000198610|ENST00000263126|AKR1C4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	648.310092	1294.60563	0.32173	0.00020858	4.4551	0.0028883	4.7768	0.0030969	648.3123795122088	97.589	0.31644	97.582	97.366	97.682	-0.0068283	-0.092924	6.3016E-05	NaN	11.495	48	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106290	+		9990	18839	5606	5606							-0.029887745688256473
FTDSNQSKT	9	Unmodified	_FTDSNQSKT_					0	0	0		PTPN13|p.P2038Sfs*15|1|0.05|ENSG00000163629|chr4:86784550-86784551|-/CTCCTCTTCTTTCTTA|frameshift_variant;nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	PTPN13|p.P2038Sfs*15|1|0.05|ENSG00000163629|chr4:86784550-86784551|-/CTCCTCTTCTTTCTTA|frameshift_variant	PTPN13|p.P2038Sfs*15|1|0.05|ENSG00000163629|chr4:86784550-86784551|-/CTCCTCTTCTTTCTTA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7591552734375	2	514.238178	1026.4618	-0.12252	-6.3002E-05	0.83015	0.0004269	0.70764	0.00036389	514.7416006305662	25.532	0.25048	25.5	25.319	25.57	-0.031408					11	8	2	0	0	0	0.24471	1	4086	4086		17.113	6.289	1	52436			9991	5712	5607	5607	13013	13013					-0.05036905075417053
FTDSNQSKT	9	Unmodified	_FTDSNQSKT_					0	0	0		PTPN13|p.P2038Sfs*15|1|0.05|ENSG00000163629|chr4:86784550-86784551|-/CTCCTCTTCTTTCTTA|frameshift_variant;nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	PTPN13|p.P2038Sfs*15|1|0.05|ENSG00000163629|chr4:86784550-86784551|-/CTCCTCTTCTTTCTTA|frameshift_variant	PTPN13|p.P2038Sfs*15|1|0.05|ENSG00000163629|chr4:86784550-86784551|-/CTCCTCTTCTTTCTTA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	514.238178	1026.4618	0.20981	0.00010789	0.69485	0.00035732	0.90466	0.00046521	514.7416681170344	25.431	0.14745	25.431	25.328	25.475	0	-0.034382	-8.2E-05	NaN	17.113	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37477			9992	5712	5607	5607							-0.05036905075417053
FTDYIEFYS	9	Unmodified	_FTDYIEFYS_					0	0	0			REV__chr2:131684819-131686064|526|19.41|0.0|20.89|+|1|C2orf27A,C2orf27A|2	REV__chr2:131684819-131686064|526|19.41|0.0|20.89|+|1|C2orf27A,C2orf27A|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.2804565429688	2	592.760955	1183.50736	0.27685	0.0001641	0.24621	0.00014595	0.52306	0.00031005	592.7609193855204	48.89	0.66355	48.922	48.632	49.295	0.032043					31	23	2	0	0	0	0.24913	1	11178	11178		12.532	0	1	300670	+		9993	13186	5608	5608	13014	13014					-0.07705679613013672
FTESKRKL	8	Unmodified	_FTESKRKL_					0	0	0		ENST00000446957.6_2_13:33110995-33111067:-|nuORF	ENST00000446957.6_2_13:33110995-33111067:-|nuORF	ENST00000446957.6_2_13:33110995-33111067:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2471923828125	2	504.795466	1007.57638	0.62819	0.00031711	-0.31406	-0.00015854	0.31413	0.00015857	504.7952707432665	32.349	0.46054	32.404	32.157	32.618	0.055309					29	16	2	0	0	0	0.34131	1	6129	6129		7.9102	0	1	157450			9994	10601	5609	5609	13015	13015					0.0728944919718515
FTFDNVLPGK	10	Unmodified	_FTFDNVLPGK_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.8229370117188	2	569.300581	1136.58661	-0.12424	-7.0733E-05	-0.97486	-0.00055499	-1.0991	-0.00062572	569.3000258452098	59.93	0.6568	59.93	59.702	60.359	0					62	23	4	0	0	0	0.21213	1	14570	14570		47.594	22.195	1	3745700			9995	1820	5610	5610	13016	13016					0.02378012131748619
FTFDNVLPGK	10	Unmodified	_FTFDNVLPGK_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3182373046875	2	569.300581	1136.58661	-0.15846	-9.0214E-05	-0.96502	-0.00054939	-1.1235	-0.0006396	569.3000318407462	59.817	0.78971	59.912	59.578	60.368	0.095093					68	28	3	0	0	0	0.22071	1	14721	14721		38.615	22.466	1	3476100			9996	1820	5610	5610	13017	13017					0.02378012131748619
FTFDNVLPGK	10	Unmodified	_FTFDNVLPGK_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.3186645507812	2	569.300581	1136.58661	0.14598	8.3108E-05	-1.1426	-0.00065051	-0.99666	-0.0005674	569.2999446984114	59.922	0.72115	59.911	59.683	60.404	-0.011486					66	25	4	0	0	0	0.20497	1	14759	14759		32.037	5.7693	1	3970500			9997	1820	5610	5610	13018	13018					0.02378012131748619
FTFFIHNPK	9	Unmodified	_FTFFIHNPK_					0	0	0		nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2	nc|ENSG00000117868|A0FGR8-2|ESYT2	nc|ENSG00000117868|A0FGR8-2|ESYT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.2704467773438	2	575.805834	1149.59712	0.31878	0.00018356	0.21488	0.00012373	0.53366	0.00030728	575.8062434815034	48.914	0.58406	48.914	48.606	49.19	0					37	20	3	0	0	0	0.050251	1	11206	11206		45.7	39.968	1	707260			9998	12676	5611	5611	13019	13019					0.02830039576838317
FTFFIHNPK	9	Unmodified	_FTFFIHNPK_					0	0	0		nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2	nc|ENSG00000117868|A0FGR8-2|ESYT2	nc|ENSG00000117868|A0FGR8-2|ESYT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8058471679688	2	575.805834	1149.59712	0.40027	0.00023048	0.035554	2.0472E-05	0.43583	0.00025095	575.8061064899808	48.965	0.49546	49.01	48.743	49.238	0.044891					28	17	2	0	0	0	0.0016361	1	11259	11259		114.65	85.567	1	434580			9999	12676	5611	5611	13020	13020					0.02830039576838317
FTFFIHNPK	9	Unmodified	_FTFFIHNPK_					0	0	0		nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2	nc|ENSG00000117868|A0FGR8-2|ESYT2	nc|ENSG00000117868|A0FGR8-2|ESYT2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	575.805834	1149.59712	0.14304	8.2363E-05	0.63463	0.00036542	0.77767	0.00044779	575.8064806282533	48.878	0.4648	48.91	48.684	49.149	0.032043	-0.034901	0.00048298	NaN	114.65	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	730120			10000	12676	5611	5611							0.02830039576838317
FTFMPFIVLF	10	Unmodified	_FTFMPFIVLF_					0	0	0			REV__nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1	REV__nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.22894287109375	3	421.22784	1260.66169	-0.0034493	-1.453E-06	2.0935	0.00088183	2.09	0.00088037	421.22818937895687	64.833	1.1134	64.824	64.26	65.374	-0.0095291					65	40	3	0	0	0	0.31746	1	16140	16140		6.1918	0.40842	1	470650	+		10001	15871	5612	5612	13021	13021					0.041784783386219715
FTFMPFIVLF	10	Unmodified	_FTFMPFIVLF_					0	0	0			REV__nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1	REV__nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	421.22784	1260.66169	0.014905	6.2786E-06	2.4883	0.0010481	2.5032	0.0010544	421.2283261853203	64.816	0.59367	64.816	64.454	65.047	0	-0.018611	0.00058991	NaN	6.1918	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317740	+		10002	15871	5612	5612							0.041784783386219715
FTFMPFIVLF	10	Unmodified	_FTFMPFIVLF_					0	0	0			REV__nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1	REV__nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	421.22784	1260.66169	0.11988	5.0497E-05	1.4513	0.00061131	1.5711	0.00066181	421.22797254777447	64.772	0.77575	64.865	64.445	65.22	0.092888	0.029611	-0.00072058	NaN	6.1918	45	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234820	+		10003	15871	5612	5612							0.041784783386219715
FTGEKKGKP	9	Unmodified	_FTGEKKGKP_					0	0	0		ENST00000463543.5_1_1:151143496-151146942:-|nuORF;TMOD4|p.F319Yfs*18|1|0.2|ENSG00000163157|chr1:151170577-151170578|AA/-|frameshift_variant;ENSG00000163157|ENST00000295314|TMOD4	ENST00000463543.5_1_1:151143496-151146942:-|nuORF	ENST00000463543.5_1_1:151143496-151146942:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2662048339844	2	496.282192	990.549831	0.34773	0.00017257	0.58378	0.00028972	0.9315	0.00046229	496.2819514528873	44.114	0.65684	44.198	44.049	44.706	0.083992					63	23	3	0	0	0	0.24581	1	9881	9881		16.942	1.0951	1	1052600			10004	5654	5613	5613	13022	13022					0.054177603058633395
FTGEKKGKP	9	Unmodified	_FTGEKKGKP_					0	0	0		ENST00000463543.5_1_1:151143496-151146942:-|nuORF;TMOD4|p.F319Yfs*18|1|0.2|ENSG00000163157|chr1:151170577-151170578|AA/-|frameshift_variant;ENSG00000163157|ENST00000295314|TMOD4	ENST00000463543.5_1_1:151143496-151146942:-|nuORF	ENST00000463543.5_1_1:151143496-151146942:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	496.282192	990.549831	0.53679	0.0002664	-0.25972	-0.00012889	0.27707	0.00013751	496.28189382105734	44.437	0.65855	44.437	44.143	44.802	0	0.13306	3.179E-05	NaN	16.942	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1054300			10005	5654	5613	5613							0.054177603058633395
FTGEKKGKP	9	Unmodified	_FTGEKKGKP_					0	0	0		ENST00000463543.5_1_1:151143496-151146942:-|nuORF;TMOD4|p.F319Yfs*18|1|0.2|ENSG00000163157|chr1:151170577-151170578|AA/-|frameshift_variant;ENSG00000163157|ENST00000295314|TMOD4	ENST00000463543.5_1_1:151143496-151146942:-|nuORF	ENST00000463543.5_1_1:151143496-151146942:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	496.282192	990.549831	0.52565	0.00026087	-0.45691	-0.00022675	0.068744	3.4116E-05	496.2819391873526	44.209	0.56148	44.277	44.065	44.627	0.068573	-0.026751	-0.00016393	NaN	16.942	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1157200			10006	5654	5613	5613							0.054177603058633395
FTGGARKLSAP	11	Unmodified	_FTGGARKLSAP_					0	0	0			REV__ENST00000452079.5_2_1:3656745-3659715:-|nuORF	REV__ENST00000452079.5_2_1:3656745-3659715:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7900390625	2	552.811648	1103.60874	0.36804	0.00020346	-0.21152	-0.00011693	0.15652	8.6528E-05	552.8110609352935	57.646	0.52044	57.646	57.466	57.986	0					28	18	2	0	0	0	0.30217	1	13981	13981		18.146	2.2992	1	437490	+		10007	21123	5614	5614	13023	13023					0.061082366001983246
FTGGARKLSAP	11	Unmodified	_FTGGARKLSAP_					0	0	0			REV__ENST00000452079.5_2_1:3656745-3659715:-|nuORF	REV__ENST00000452079.5_2_1:3656745-3659715:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7899169921875	2	552.811648	1103.60874	0.28174	0.00015575	-0.57077	-0.00031553	-0.28903	-0.00015978	552.8111083136258	57.869	0.47758	57.852	57.582	58.06	-0.0172					27	17	2	0	0	0	0.30217	1	14011	14011		13.042	5.1323	1	436080	+		10008	21123	5614	5614	13024	13024					0.061082366001983246
FTGPPTFPK	9	Unmodified	_FTGPPTFPK_					0	0	0		nc|ENSG00000184368|Q96T17-5|MAP7D2;nc|ENSG00000184368|Q96T17-4|MAP7D2;nc|ENSG00000184368|Q96T17|MAP7D2;ENSG00000184368|ENST00000379643|MAP7D2	nc|ENSG00000184368|Q96T17-5|MAP7D2	nc|ENSG00000184368|Q96T17-5|MAP7D2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2662353515625	2	496.26601	990.517468	0.62135	0.00030836	-0.41216	-0.00020454	0.20919	0.00010381	496.2658470959939	44.862	0.98317	44.862	44.493	45.476	0					69	35	2	0	0	0	0.07944	1	9969	9969		41.956	17.935	1	1745400			10009	7448	5615	5615	13025	13025					0.021829729028581824
FTGPPTFPK	9	Unmodified	_FTGPPTFPK_					0	0	0		nc|ENSG00000184368|Q96T17-5|MAP7D2;nc|ENSG00000184368|Q96T17-4|MAP7D2;nc|ENSG00000184368|Q96T17|MAP7D2;ENSG00000184368|ENST00000379643|MAP7D2	nc|ENSG00000184368|Q96T17-5|MAP7D2	nc|ENSG00000184368|Q96T17-5|MAP7D2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2661437988281	2	496.26601	990.517468	0.53504	0.00026552	-0.25555	-0.00012682	0.2795	0.0001387	496.26591594192456	44.684	0.90781	44.752	44.437	45.345	0.068569					62	32	2	0	0	0	0.04299	1	9897	9897		55.503	19.376	1	2153900			10010	7448	5615	5615	13026	13026					0.021829729028581824
FTGPPTFPK	9	Unmodified	_FTGPPTFPK_					0	0	0		nc|ENSG00000184368|Q96T17-5|MAP7D2;nc|ENSG00000184368|Q96T17-4|MAP7D2;nc|ENSG00000184368|Q96T17|MAP7D2;ENSG00000184368|ENST00000379643|MAP7D2	nc|ENSG00000184368|Q96T17-5|MAP7D2	nc|ENSG00000184368|Q96T17-5|MAP7D2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2661437988281	2	496.26601	990.517468	0.52782	0.00026194	-0.2286	-0.00011345	0.29921	0.00014849	496.2658972057842	44.688	0.92191	44.764	44.418	45.34	0.075047					58	33	2	0	0	0	0.058995	1	9929	9929		49.554	20.473	1	2125700			10011	7448	5615	5615	13027	13027					0.021829729028581824
FTGSGFFL	8	Unmodified	_FTGSGFFL_					0	0	0			REV__ENSG00000280090|ENST00000356130|OR8B4	REV__ENSG00000280090|ENST00000356130|OR8B4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.23004150390625	2	438.218529	874.422505	-0.10928	-4.7888E-05	-0.3099	-0.00013581	-0.41918	-0.00018369	438.21846879457104	22.025	1.0149	21.975	21.689	22.704	-0.049377					63	35	2	0	0	0	0.31934	1	3017	3017		24.674	6.5389	1	60737	+		10012	19358	5616	5616	13028	13028					-0.019729605683437512
FTGSVADLAF	10	Unmodified	_FTGSVADLAF_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;EDC4|p.M271Cfs*23|1|0.09|ENSG00000038358|chr16:67877762-67877762|A/-|frameshift_variant;ENST00000572221.5_1_16:67909733-67911757:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8191528320312	2	514.258382	1026.50221	0.44286	0.00022775	-3.6655	-0.001885	-3.2226	-0.0016573	514.2573739159768	44.55	0.14383	44.618	44.567	44.711	0.068569					5	4	2	0	0	0	0.3156	1	9866	9866		10.824	2.2306	1	104970			10013	589	5617	5617	13029	13029					-0.009979386850091032
FTILDSKQFI	10	Unmodified	_FTILDSKQFI_					0	0	0		nc|ENSG00000172594|Q92484-2|SMPDL3A;ENSG00000172594|ENST00000368440|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3372192382812	2	606.337164	1210.65977	0.27697	0.00016794	0.091803	5.5663E-05	0.36877	0.0002236	606.3373530032461	69.789	1.5388	69.766	69.462	71.001	-0.022087					186	55	5	0	0	0	0.18562	1	17995	17995		34.402	4.9646	1	14752000			10014	6650	5618	5618	13030	13030					0.06287140854396966
FTIPTSMQV	9	Unmodified	_FTIPTSMQV_					0	0	0		ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2791748046875	2	512.26261	1022.51067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.551	1	83.551	83.051	84.051	0								0	0	0	0.20238	1	21863	21863		21.747	4.8044	1				10015	6826	5619	5619	13031	13031					0.0003129195997644274
FTIPTSMQV	9	Unmodified	_FTIPTSMQV_					0	0	0		ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.279296875	2	512.26261	1022.51067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.705	1	83.705	83.205	84.205	0								0	0	0	0.17683	1	21909	21909		28.487	11.545	1				10016	6826	5619	5619	13032	13032					0.0003129195997644274
FTKGEFAQL	9	Unmodified	_FTKGEFAQL_					0	0	0			REV__nc|ENSG00000197444|Q9ULD0-3|OGDHL	REV__nc|ENSG00000197444|Q9ULD0-3|OGDHL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2845458984375	2	520.7742	1039.53385	0.32222	0.00016781	-0.37378	-0.00019465	-0.051553	-2.6847E-05	520.7738999752801	66.512	0.61903	66.498	66.25	66.869	-0.013588					46	22	3	0	0	0	0.23749	1	16719	16719		20.415	1.0526	1	545200	+		10017	18737	5620	5620	13033	13033					0.01566054068939593
FTKHTPCR	8	Unmodified	_FTKHTPCR_					0	0	0		ENSG00000187862|ENST00000368236|TTC24	ENSG00000187862|ENST00000368236|TTC24	ENSG00000187862|ENST00000368236|TTC24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.78472900390625	2	495.252911	988.49127	0.75583	0.00037433	-0.89996	-0.00044571	-0.14413	-7.138E-05	495.2521352476371	45.726	0.6921	45.726	45.476	46.168	0					34	24	2	0	0	0	0.32886	1	10181	10181		10.824	2.9138	1	243070			10018	7717	5621	5621	13034	13034					-0.0034361954027417596
FTKTHKFRL	9	Unmodified	_FTKTHKFRL_					0	0	0		nc|ENSG00000132603|Q9Y221-2|NIP7;ENSG00000132603|ENST00000254940|NIP7;ENST00000565034.1_1_16:69373956-69375289:+|nuORF	nc|ENSG00000132603|Q9Y221-2|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3417358398438	2	589.345658	1176.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.31	1	113.29	112.79	113.79	-0.017303								0	0	0	0.26513	1	29457	29457		1.4819	0.8804	1				10019	3652	5622	5622	13035	13035					0.09549106250847217
FTLEFHFKP	9	Unmodified	_FTLEFHFKP_					0	0	0		nc|ENSG00000186462|Q9ULW6-2|NAP1L2;ENSG00000186462|ENST00000373517|NAP1L2	nc|ENSG00000186462|Q9ULW6-2|NAP1L2	nc|ENSG00000186462|Q9ULW6-2|NAP1L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3058471679688	2	583.305667	1164.59678	0.42447	0.0002476	0.40793	0.00023795	0.8324	0.00048554	583.3057615383146	73.082	1.1433	73.052	72.627	73.77	-0.029297					90	41	3	0	0	0	0.25314	2	18746	18643;18746		15.847	3.6065	1	568450			10020	7618	5623	5623	13036;13037	13037					0.02106619856999714
FTLELDRVTF	10	Unmodified	_FTLELDRVTF_					0	0	0		nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	nc|ENSG00000065243|Q16513-3|PKN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.87982177734375	3	414.223923	1239.64994	0.13608	5.6367E-05	-4.1928	-0.0017368	-4.0567	-0.0016804	414.556791663497	22.589	0.66524	22.502	22.272	22.937	-0.087608					48	23	3	0	0	0	0.31256	1	3213	3213		17.863	4.2483	1	126490			10021	12580	5624	5624	13038	13038					0.03969952848979119
FTLHSALWVVR	11	Unmodified	_FTLHSALWVVR_					0	0	0			REV__ENST00000431558.1_1_3:9989113-9989800:+|nuORF	REV__ENST00000431558.1_1_3:9989113-9989800:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.7156982421875	3	443.587307	1327.74009	0.16067	7.1273E-05	2.427	0.0010766	2.5877	0.0011479	443.5883588077545	31.712	0.2298	31.755	31.652	31.882	0.042364					10	7	2	0	0	0	0.33236	1	5961	5961		4.4062	1.3339	1	189510	+		10022	20953	5625	5625	13039	13039					0.08933046968036251
FTLNSQVLT	9	Unmodified	_FTLNSQVLT_					0	0	0		ENST00000417851.2_1_3:50255182-50255305:+|nuORF	ENST00000417851.2_1_3:50255182-50255305:+|nuORF	ENST00000417851.2_1_3:50255182-50255305:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.790283203125	2	511.779482	1021.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.306	1	84.306	83.806	84.806	0								0	0	0	0.22065	1	22094	22094		15.847	0	1				10023	10342	5626	5626	13040	13040					0.034500367233818
FTLRHFIVY	9	Unmodified	_FTLRHFIVY_					0	0	0		ENST00000401578.2_1_6:80779646-80779811:-|nuORF;ENST00000476499.1_1_10:24918849-25010828:-|nuORF;nc|ENSG00000275832|Q9P227-2|ARHGAP23;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENSG00000275832|ENST00000622683|ARHGAP23;ARHGAP21|p.L1853Rfs*14|1|0.05|ENSG00000107863|chr10:24584731-24584732|-/AATAAAC|frameshift_variant;ENSG00000107863|ENST00000396432|ARHGAP21	ENST00000401578.2_1_6:80779646-80779811:-|nuORF	ENST00000401578.2_1_6:80779646-80779811:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.817626953125	2	598.334759	1194.65496	0.37292	0.00022313	-2.7166	-0.0016255	-2.3437	-0.0014023	598.3328697791817	44.202	0.13299	44.277	44.174	44.307	0.075047					6	4	2	0	0	0	0.26612	1	9754	9754		13.906	1.6654	1	144070			10024	52	5627	5627	13041	13041					0.06542301502281589
FTLRHFIVY	9	Unmodified	_FTLRHFIVY_					0	0	0		ENST00000401578.2_1_6:80779646-80779811:-|nuORF;ENST00000476499.1_1_10:24918849-25010828:-|nuORF;nc|ENSG00000275832|Q9P227-2|ARHGAP23;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENSG00000275832|ENST00000622683|ARHGAP23;ARHGAP21|p.L1853Rfs*14|1|0.05|ENSG00000107863|chr10:24584731-24584732|-/AATAAAC|frameshift_variant;ENSG00000107863|ENST00000396432|ARHGAP21	ENST00000401578.2_1_6:80779646-80779811:-|nuORF	ENST00000401578.2_1_6:80779646-80779811:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	598.334759	1194.65496	0.64973	0.00038875	-2.9009	-0.0017357	-2.2512	-0.001347	598.3329906948367	44.505	0.27606	44.505	44.357	44.633	0	0.11435	-6.7893E-05	NaN	13.906	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190510			10025	52	5627	5627							0.06542301502281589
FTLSHITQL	9	Unmodified	_FTLSHITQL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.295654296875	2	530.295299	1058.57605	0.38812	0.00020582	-0.034114	-1.809E-05	0.35401	0.00018773	530.295125576081	59.075	0.50715	59.166	58.953	59.46	0.091301					30	17	2	0	0	0	0.082647	1	14373	14373		61.602	17.83	1	339460			10026	4816	5628	5628	13042	13042					0.049100294773325004
FTLSHITQL	9	Unmodified	_FTLSHITQL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2952270507812	2	530.295299	1058.57605	0.61936	0.00032845	-0.20927	-0.00011098	0.41009	0.00021747	530.2950990948356	59.236	0.50874	59.222	59.031	59.54	-0.014267					29	17	2	0	0	0	0.08298	1	14434	14434		60.074	27.768	1	337210			10027	4816	5628	5628	13043	13043					0.049100294773325004
FTLSHITQL	9	Unmodified	_FTLSHITQL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	530.295299	1058.57605	0.40518	0.00021487	0.18497	9.8088E-05	0.59015	0.00031295	530.2953567242255	59.299	0.47939	59.299	59.081	59.56	0	0.069821	0.00018884	NaN	61.602	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322130			10028	4816	5628	5628							0.049100294773325004
FTLTKMGEF	9	Unmodified	_FTLTKMGEF_					0	0	0		ENST00000506866.6_1_4:140454428-140468080:-|nuORF	ENST00000506866.6_1_4:140454428-140468080:-|nuORF	ENST00000506866.6_1_4:140454428-140468080:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2532958984375	2	537.270435	1072.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.903	1	65.892	65.392	66.392	-0.011337								0	0	0	0.22377	1	16454	16454		14.838	0.43289	1				10029	11331	5629	5629	13044	13044					-0.007044215229825568
FTMKTVLML	9	2 Oxidation (M)	_FTM(Oxidation (M))KTVLM(Oxidation (M))L_		FTM(1)KTVLM(1)L		FTM(87)KTVLM(87)L	0	0	2		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2958374023438	2	558.295596	1114.57664	0.2648	0.00014784	-0.38473	-0.0002148	-0.11993	-6.6958E-05	558.2954695095497	51.917	0.98486	51.917	51.565	52.55	0					86	35	4	0	0	0	0.0048951	2	12120	12120;12166		87.258	45.419	1	1543300			10030	2523	5630	5630	13045;13046	13045		313;314			0.023933648105185057
FTMKTVLML	9	2 Oxidation (M)	_FTM(Oxidation (M))KTVLM(Oxidation (M))L_		FTM(1)KTVLM(1)L		FTM(87)KTVLM(87)L	0	0	2		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2957763671875	2	558.295596	1114.57664	0.36232	0.00020228	-0.4023	-0.0002246	-0.039978	-2.232E-05	558.295395821859	51.865	0.77204	51.916	51.565	52.337	0.050571					70	27	4	0	0	0	0.0048951	2	12130	12130;12178		87.258	45.419	1	1597800			10031	2523	5630	5630	13047;13048	13047		313;314			0.023933648105185057
FTMKTVLML	9	2 Oxidation (M)	_FTM(Oxidation (M))KTVLM(Oxidation (M))L_		FTM(1)KTVLM(1)L		FTM(110)KTVLM(110)L	0	0	2		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2954711914062	2	558.295596	1114.57664	0.052476	2.9297E-05	-0.092452	-5.1615E-05	-0.039976	-2.2318E-05	558.2956029354121	51.975	0.81229	51.974	51.683	52.495	-0.00080872					85	29	4	0	0	0	0.0023895	2	12186	12139;12186		107.1	57.167	1	1618300			10032	2523	5630	5630	13049;13050	13050		313;314			0.023933648105185057
FTMLRLANEAK	11	Unmodified	_FTMLRLANEAK_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5560302734375	3	431.904307	1292.69109	-0.20058	-8.6633E-05	3.4014	0.0014691	3.2008	0.0013825	432.24037506203865	33.872	0.41603	33.938	33.711	34.127	0.066704					40	14	4	0	0	0	0.33189	1	6646	6646		1.9275	0	1	185790			10033	7500	5631	5631	13051	13051					0.05645390616791701
FTNDKIINL	9	Unmodified	_FTNDKIINL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3009643554688	2	539.300581	1076.58661	0.46625	0.00025145	-0.37829	-0.00020401	0.08796	4.7437E-05	539.3005711628571	52.037	1.1971	52.037	51.297	52.494	0					105	43	3	0	0	0	0.0040516	3	12212	12168;12212;12259		93.938	29.871	1	1370000			10034	1207	5632	5632	13052;13053;13054	13053					0.05138012131760661
FTNDKIINL	9	Unmodified	_FTNDKIINL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.30078125	2	539.300581	1076.58661	0.46494	0.00025074	-0.32931	-0.0001776	0.13563	7.3144E-05	539.3005578228285	51.973	1.0116	52.024	51.351	52.363	0.050571					84	36	3	0	0	0	0.0099976	1	12205	12205		79.427	25.594	1	1503500			10035	1207	5632	5632	13055	13055					0.05138012131760661
FTNDKIINL	9	Unmodified	_FTNDKIINL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.3009033203125	2	539.300581	1076.58661	0.37501	0.00020225	-0.4068	-0.00021939	-0.031786	-1.7142E-05	539.3005763039871	52.07	1.6979	52.069	50.85	52.548	-0.00081253					133	63	3	0	0	0	0.0047555	1	12228	12228		88.364	26.762	1	1472600			10036	1207	5632	5632	13056	13056					0.05138012131760661
FTNMDLYYQA	10	Unmodified	_FTNMDLYYQA_					0	0	0			REV__ENSG00000241224|ENST00000622536|C3orf85	REV__ENSG00000241224|ENST00000622536|C3orf85	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.8192138671875	2	633.278989	1264.54342	0.34721	0.00021988	-3.7421	-0.0023698	-3.3949	-0.0021499	633.7782407374123	46.284	0.11488	46.349	46.279	46.394	0.065048					5	3	2	0	0	0	0.31642	1	10405	10405		10.8	2.0541	1	145950	+		10037	19177	5633	5633	13057	13057					-0.07826545707825971
FTNMDLYYQA	10	Unmodified	_FTNMDLYYQA_					0	0	0			REV__ENSG00000241224|ENST00000622536|C3orf85	REV__ENSG00000241224|ENST00000622536|C3orf85	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	633.278989	1264.54342	0.19947	0.00012632	-5.9953	-0.0037967	-5.7959	-0.0036704	633.7785801574353	46.554	0.16051	46.554	46.458	46.618	0	0.10249	-0.002626	NaN	10.8	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133630	+		10038	19177	5633	5633							-0.07826545707825971
FTPKECRTL	9	Unmodified	_FTPKECRTL_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;DOCK8|p.N1266Ifs*5|1|0.21|ENSG00000107099|chr9:418160-418160|G/-|frameshift_variant;ENST00000478380.5_1_9:286487-312499:+|nuORF;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7879638671875	2	547.786784	1093.55902	0.55152	0.00030212	0.44993	0.00024647	1.0015	0.00054858	547.787451637085	29.255	0.49524	29.267	28.974	29.469	0.012264					22	17	2	0	0	0	0.25112	1	5226	5226		16.149	0.30192	1	173310			10039	2110	5634	5634	13058	13058					0.015977855998698942
FTPYLKQV	8	Unmodified	_FTPYLKQV_					0	0	0		ENST00000372584.5_1_1:42384147-42384327:-|nuORF	ENST00000372584.5_1_1:42384147-42384327:-|nuORF	ENST00000372584.5_1_1:42384147-42384327:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7896423339844	2	498.28166	994.548768	-0.054021	-2.6917E-05	0.10105	5.0354E-05	0.047034	2.3436E-05	498.2816897543909	61.757	0.55762	61.854	61.592	62.149	0.096985					35	19	2	0	0	0	0.33245	1	15266	15266		13.508	1.8676	1	501620			10040	9847	5635	5635	13059	13059					0.051275459369549026
FTQALKLNPQ	10	Unmodified	_FTQALKLNPQ_					0	0	0		ENST00000487623.1_1_2:74718721-74719901:+|nuORF;ENST00000464241.5_1_2:74710222-74719357:+|nuORF;ENSG00000115282|ENST00000233623|TTC31	ENST00000487623.1_1_2:74718721-74719901:+|nuORF	ENST00000487623.1_1_2:74718721-74719901:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8269653320312	2	580.327131	1158.63971	0.057123	3.315E-05	-2.1262	-0.0012339	-2.069	-0.0012007	580.3260750309685	19.029	0.40345	19.029	18.839	19.243	0					22	13	2	0	0	0	0.40106	1	2112	2112		3.2813	0	1	58288			10041	2629	5636	5636	13060	13060					0.06673389914385552
FTQALKLNPQ	10	Unmodified	_FTQALKLNPQ_					0	0	0		ENST00000487623.1_1_2:74718721-74719901:+|nuORF;ENST00000464241.5_1_2:74710222-74719357:+|nuORF;ENSG00000115282|ENST00000233623|TTC31	ENST00000487623.1_1_2:74718721-74719901:+|nuORF	ENST00000487623.1_1_2:74718721-74719901:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	580.327131	1158.63971	0.14002	8.1258E-05	-2.5589	-0.001485	-2.4189	-0.0014038	580.3257254759749	19.198	0.37668	19.142	18.961	19.337	-0.055693	0.042648	-0.00017442	NaN	3.2813	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61617			10042	2629	5636	5636							0.06673389914385552
FTQAVFETI	9	Unmodified	_FTQAVFETI_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2744140625	2	528.274032	1054.53351	0.48244	0.00025486	0.58382	0.00030842	1.0663	0.00056328	528.2741326430174	80.691	0.71915	80.691	80.389	81.108	0					55	32	2	0	0	0	0.10059	1	20967	20967		38.176	9.094	1	563520			10043	5950	5637	5637	13061	13061					0.008426343491009902
FTQGDFITCV	10	Unmodified	_FTQGDFITCV_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.N2925Kfs*3|1|0.27|ENSG00000103657|chr15:63663110-63663111|-/TT|frameshift_variant;ENST00000443617.6_1_15:63972339-63972820:-|nuORF	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7979125976562	2	565.762975	1129.5114	0.18396	0.00010408	-1.7362	-0.00098227	-1.5522	-0.00087819	565.7622970670305	66.644	0.95766	66.631	66.193	67.151	-0.013588					48	34	2	0	0	0	0.29112	1	16668	16668		19.362	0	1	301600			10044	1848	5638	5638	13062	13062					-0.04817913390979811
FTQIFKRRF	9	Unmodified	_FTQIFKRRF_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.2498779296875	3	414.90838	1241.70331	0.085469	3.5462E-05	-0.45721	-0.0001897	-0.37174	-0.00015424	414.9081218416609	35.916	0.48084	35.916	35.719	36.2	0					30	17	3	0	0	0	0.30459	1	7290	7290		8.1555	0.54658	1	157250	+		10045	19226	5639	5639	13063	13063					0.0921279514213893
FTQKLRSP	8	Unmodified	_FTQKLRSP_					0	0	0		ENST00000373883.3_1_2:220408769-220409425:+|nuORF;ENST00000421791.1_3_2:220408769-220409493:+|nuORF;ENST00000344458.6_1_2:220408458-220409493:+|nuORF	ENST00000373883.3_1_2:220408769-220409425:+|nuORF	ENST00000373883.3_1_2:220408769-220409425:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7823486328125	2	488.782359	975.550165	0.20849	0.00010191	-0.03502	-1.7117E-05	0.17347	8.4788E-05	488.78231396906034	33.142	1.2279	33.142	32.5	33.728	0					96	43	3	0	0	0	0.22	1	6372	6372		39.957	5.8549	1	800980			10046	9554	5640	5640	13064	13064					0.06141180025701942
FTQKLRSP	8	Unmodified	_FTQKLRSP_					0	0	0		ENST00000373883.3_1_2:220408769-220409425:+|nuORF;ENST00000421791.1_3_2:220408769-220409493:+|nuORF;ENST00000344458.6_1_2:220408458-220409493:+|nuORF	ENST00000373883.3_1_2:220408769-220409425:+|nuORF	ENST00000373883.3_1_2:220408769-220409425:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7823791503906	2	488.782359	975.550165	0.26373	0.00012891	-0.098697	-4.8241E-05	0.16503	8.0666E-05	488.78225150466324	33.066	1.1066	33.122	32.506	33.613	0.055309					87	39	3	0	0	0	0.29634	1	6362	6362		34.102	0	1	922860			10047	9554	5640	5640	13065	13065					0.06141180025701942
FTQKLRSP	8	Unmodified	_FTQKLRSP_					0	0	0		ENST00000373883.3_1_2:220408769-220409425:+|nuORF;ENST00000421791.1_3_2:220408769-220409493:+|nuORF;ENST00000344458.6_1_2:220408458-220409493:+|nuORF	ENST00000373883.3_1_2:220408769-220409425:+|nuORF	ENST00000373883.3_1_2:220408769-220409425:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7824401855469	2	488.782359	975.550165	0.24778	0.00012111	0.077443	3.7853E-05	0.32522	0.00015896	488.78234062838726	33.08	1.0681	33.134	32.553	33.621	0.054371					92	38	3	0	0	0	0.29634	1	6359	6359		34.102	8.7031	1	771450			10048	9554	5640	5640	13066	13066					0.06141180025701942
FTRFRDWHF	9	Unmodified	_FTRFRDWHF_					0	0	0			REV__ENSG00000100888|ENST00000646647|CHD8	REV__ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.8834533691406	3	437.884235	1310.63087	0.33298	0.00014581	-1.496	-0.00065508	-1.163	-0.00050927	437.88358233740655	52.934	0.52684	52.99	52.746	53.273	0.056259					30	18	3	0	0	0	0.30824	1	12493	12493		7.609	0.97858	1	455810	+		10049	14234	5641	5641	13067	13067					-0.012015389314228742
FTRFRDWHF	9	Unmodified	_FTRFRDWHF_					0	0	0			REV__ENSG00000100888|ENST00000646647|CHD8	REV__ENSG00000100888|ENST00000646647|CHD8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	437.884235	1310.63087	0.10112	4.4281E-05	-0.90716	-0.00039723	-0.80603	-0.00035295	437.8837403137983	53.008	0.51815	53.008	52.767	53.286	0	-0.061232	0.00017101	NaN	7.609	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	486480	+		10050	14234	5641	5641							-0.012015389314228742
FTRFRDWHF	9	Unmodified	_FTRFRDWHF_					0	0	0			REV__ENSG00000100888|ENST00000646647|CHD8	REV__ENSG00000100888|ENST00000646647|CHD8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	437.884235	1310.63087	0.33298	0.00014581	-1.496	-0.00065508	-1.163	-0.00050927	437.88358233740655	52.934	0.52684	52.99	52.746	53.273	0.056259	-0.078438	-0.00060254	NaN	7.609	30	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455810	+		10051	14234	5641	5641							-0.012015389314228742
FTRFRDWHF	9	Unmodified	_FTRFRDWHF_					0	0	0			REV__ENSG00000100888|ENST00000646647|CHD8	REV__ENSG00000100888|ENST00000646647|CHD8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	437.884235	1310.63087	0.1211	5.3029E-05	-0.785	-0.00034374	-0.6639	-0.00029071	437.8837435607566	53.218	0.52917	53.209	53.056	53.585	-0.0096092	0.13967	0.00033147	NaN	7.609	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388490	+		10052	14234	5641	5641							-0.012015389314228742
FTRFSSGFP	9	Unmodified	_FTRFSSGFP_					0	0	0			REV__ENSG00000145041|ENST00000684031|DCAF1	REV__ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2584228515625	2	523.258717	1044.50288	0.48263	0.00025254	-0.19357	-0.00010129	0.28906	0.00015126	523.2586298126422	43.634	1.7014	43.711	43.401	45.102	0.077515					136	62	4	0	0	0	0.079752	1	9761	9761		41.84	1.8823	1	5472200	+		10053	16275	5642	5642	13068	13068					-0.01759099245282414
FTRWKRKLM	9	Unmodified	_FTRWKRKLM_					0	0	0			REV__ENST00000577944.5_2_17:80397520-80400257:+|nuORF	REV__ENST00000577944.5_2_17:80397520-80400257:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.5816955566406	3	422.581499	1264.72267	0.17738	7.4959E-05	0.68804	0.00029075	0.86543	0.00036571	422.58167984508225	84.892	0.82237	84.892	84.324	85.146	0					66	30	3	0	0	0	0.34923	2	22246	22246;22307		0.77653	0.77653	1	459710	+		10054	22463	5643	5643	13069;13070	13069					0.1008942816142735
FTSALAGQVFF	11	Unmodified	_FTSALAGQVFF_					0	0	0		ENSG00000132702|ENST00000255039|HAPLN2	ENSG00000132702|ENST00000255039|HAPLN2	ENSG00000132702|ENST00000255039|HAPLN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.2916259765625	2	594.308406	1186.60226	0.41679	0.0002477	-2.0262	-0.0012042	-1.6094	-0.00095647	594.8065953840446	44.194	0.32076	44.194	43.959	44.28	0					24	11	3	0	0	0	0.23019	1	9756	9756		28.495	0.86571	1	268640			10055	3660	5644	5644	13071	13071					0.016422986487896196
FTSALAGQVFF	11	Unmodified	_FTSALAGQVFF_					0	0	0		ENSG00000132702|ENST00000255039|HAPLN2	ENSG00000132702|ENST00000255039|HAPLN2	ENSG00000132702|ENST00000255039|HAPLN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.2919311523438	2	594.308406	1186.60226	0.44769	0.00026607	-0.31814	-0.00018907	0.12955	7.6993E-05	594.3106342713878	43.87	0.13416	43.948	43.865	43.999	0.077518					8	4	3	0	0	0	0.17507	1	9672	9672		33.445	4.3633	1	167280			10056	3660	5644	5644	13072	13072					0.016422986487896196
FTSCSGYVGQN	11	Unmodified	_FTSCSGYVGQN_					0	0	0			REV__nc|ENSG00000183579|Q9ULT6-2|ZNRF3	REV__nc|ENSG00000183579|Q9ULT6-2|ZNRF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7451171875	2	581.745313	1161.47607	0.071063	4.1341E-05	-0.38066	-0.00022145	-0.3096	-0.00018011	581.7455497779193	25.959	0.54038	25.92	25.694	26.235	-0.038671					39	18	3	0	0	0	0.44828	1	4191	4191		4.897	0.56777	1	282030	+		10057	18272	5645	5645	13073	13073					-0.09820575918774921
FTSILKHGV	9	Unmodified	_FTSILKHGV_					0	0	0		ENST00000569826.2_1_15:42864283-42864628:+|nuORF	ENST00000569826.2_1_15:42864283-42864628:+|nuORF	ENST00000569826.2_1_15:42864283-42864628:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.6344909667969	2	501.292559	1000.57057	0.32053	0.00016068	-2.1576	-0.0010816	-1.837	-0.00092089	501.29032934460633	92.681	0.18884	92.77	92.643	92.832	0.089195					19	13	2	0	0	0	0.2451	1	24633	24633		6.7232	0	1	53247			10058	12013	5646	5646	13074	13074					0.07030350685522535
FTSLLIECLSL	11	Unmodified	_FTSLLIECLSL_					0	0	0		ENST00000559655.1_1_15:35141948-35142251:-|nuORF	ENST00000559655.1_1_15:35141948-35142251:-|nuORF	ENST00000559655.1_1_15:35141948-35142251:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.55023193359375	3	413.561547	1237.66281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.579	1	22.534	22.034	23.034	-0.044867								0	0	0	0.34476	1	3185	3185		4.7159	1.9807	1				10059	11886	5647	5647	13075	13075					0.053486479168668666
FTSPNISQF	9	Unmodified	_FTSPNISQF_					0	0	0			REV__nc|ENSG00000154783|Q6ZNL6-2|FGD5	REV__nc|ENSG00000154783|Q6ZNL6-2|FGD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7557983398438	2	520.756007	1039.49746	0.427	0.00022236	0.082365	4.2892E-05	0.50937	0.00026526	520.7559463653075	70.449	0.6669	70.424	70.106	70.773	-0.024872					48	23	3	0	0	0	0.048637	1	17858	17858		53.404	19.002	1	415020	+		10060	16678	5648	5648	13076	13076					-0.020708228277726448
FTSRQSLQAL	10	Unmodified	_FTSRQSLQAL_					0	0	0		nc|ENSG00000177963|Q9NPQ8-2|RIC8A;nc|ENSG00000177963|Q9NPQ8-4|RIC8A;ENSG00000177963|ENST00000526104|RIC8A;nc|ENSG00000177963|Q9NPQ8-3|RIC8A;ENST00000526982.1_1_11:209264-210619:+|nuORF	nc|ENSG00000177963|Q9NPQ8-2|RIC8A	nc|ENSG00000177963|Q9NPQ8-2|RIC8A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7715454101562	2	575.814387	1149.61422	0.40633	0.00023397	-2.9092	-0.0016751	-2.5028	-0.0014412	575.8127472472274	37.862	0.43862	37.953	37.744	38.183	0.090885					19	15	2	0	0	0	0.31629	1	7874	7874		10.074	2.1638	1	158640			10061	7028	5649	5649	13077	13077					0.04539915392001603
FTTLAAFAGF	10	Unmodified	_FTTLAAFAGF_					0	0	0			REV__nc|ENSG00000151726|P33121-2|ACSL1	REV__nc|ENSG00000151726|P33121-2|ACSL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3035278320312	2	523.271293	1044.52803	0.64788	0.00033902	2.5752	0.0013475	3.2231	0.0016865	523.2726617522852	76.747	0.83968	76.715	76.422	77.262	-0.031479					35	30	2	0	0	0	0.3156	1	19838	19838		10.824	1.4765	1	121820	+		10062	16555	5650	5650	13078	13078					0.007549555572722966
FTTLYFSLDP	10	Unmodified	_FTTLYFSLDP_					0	0	0			REV__nc|ENSG00000138835|P49796-5|RGS3	REV__nc|ENSG00000138835|P49796-5|RGS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3770141601562	2	602.300247	1202.58594	0.14524	8.748E-05	-0.46987	-0.000283	-0.32462	-0.00019552	602.2999096291644	40.919	0.64988	41.016	40.748	41.397	0.096626					67	23	4	0	0	0	0.30586	1	8812	8812		13.906	0	1	1990300	+		10063	15962	5651	5651	13079	13079					-0.007248273079540013
FTTLYFSLDP	10	Unmodified	_FTTLYFSLDP_					0	0	0			REV__nc|ENSG00000138835|P49796-5|RGS3	REV__nc|ENSG00000138835|P49796-5|RGS3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	602.300247	1202.58594	0.29257	0.00017621	-0.65714	-0.0003958	-0.36457	-0.00021958	602.2997921218764	41.231	0.57065	41.231	40.96	41.531	0	0.11839	-2.8938E-05	NaN	9.3831	63	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2025000	+		10064	15962	5651	5651							-0.007248273079540013
FTTLYFSLDP	10	Unmodified	_FTTLYFSLDP_					0	0	0			REV__nc|ENSG00000138835|P49796-5|RGS3	REV__nc|ENSG00000138835|P49796-5|RGS3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	602.300247	1202.58594	0.50736	0.00030558	-0.8095	-0.00048756	-0.30214	-0.00018198	602.2997252618046	41	0.68896	41.09	40.822	41.511	0.090252	-0.021739	-0.00021247	NaN	9.3831	71	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2478000	+		10065	15962	5651	5651							-0.007248273079540013
FTVFSYTI	8	Unmodified	_FTVFSYTI_					0	0	0			REV__ENST00000475645.1_1_6:106633518-106633809:-|nuORF	REV__ENST00000475645.1_1_6:106633518-106633809:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.26934814453125	2	489.252569	976.490584	0.14118	6.9072E-05	0.70475	0.0003448	0.84593	0.00041387	489.252358760119	26.125	0.64786	26.086	25.871	26.519	-0.038671					43	22	3	0	0	0	0.42758	1	4224	4224		13.508	0	1	146300	+		10066	21409	5652	5652	13080	13080					0.0013986429167971437
FTVFSYTI	8	Unmodified	_FTVFSYTI_					0	0	0			REV__ENST00000475645.1_1_6:106633518-106633809:-|nuORF	REV__ENST00000475645.1_1_6:106633518-106633809:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	489.252569	976.490584	0.16202	7.9269E-05	-0.035811	-1.752E-05	0.12621	6.1749E-05	489.25238330881723	26.175	0.65791	26.175	25.9	26.558	0	0.00019134	-5.1847E-05	NaN	13.508	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140900	+		10067	21409	5652	5652							0.0013986429167971437
FTVFSYTI	8	Unmodified	_FTVFSYTI_					0	0	0			REV__ENST00000475645.1_1_6:106633518-106633809:-|nuORF	REV__ENST00000475645.1_1_6:106633518-106633809:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	489.252569	976.490584	0.14118	6.9072E-05	0.70475	0.0003448	0.84593	0.00041387	489.252358760119	26.125	0.64786	26.086	25.871	26.519	-0.038671	-0.0891	0.0006728	NaN	13.508	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146300	+		10068	21409	5652	5652							0.0013986429167971437
FTVFSYTI	8	Unmodified	_FTVFSYTI_					0	0	0			REV__ENST00000475645.1_1_6:106633518-106633809:-|nuORF	REV__ENST00000475645.1_1_6:106633518-106633809:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	489.252569	976.490584	0.31725	0.00015522	-0.23926	-0.00011706	0.077991	3.8157E-05	489.25221645623594	26.286	0.58681	26.264	25.97	26.556	-0.022238	0.088909	-0.00025093	NaN	13.508	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160550	+		10069	21409	5652	5652							0.0013986429167971437
FTVIHRSKRK	10	Unmodified	_FTVIHRSKRK_					0	0	0		ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.8631591796875	2	636.388388	1270.76222	0.3003	0.00019111	-0.16004	-0.00010185	0.14026	8.9259E-05	636.3883297946929	33.387	0.50116	33.387	33.145	33.646	0					40	17	3	0	0	0	0.32123	1	6408	6408		1.6526	0.32309	1	184070			10070	8199	5653	5653	13081	13081					0.13767271436472583
FTWTCVKLCPK	11	Unmodified	_FTWTCVKLCPK_					0	0	0			REV__MLT1K_dup15840|chr19:35157523-35158030:-|1.2991877397698728|0.3327659589692898|1.97|539.0|5|1|sense	REV__MLT1K_dup15840|chr19:35157523-35158030:-|1.2991877397698728|0.3327659589692898|1.97|539.0|5|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.27716064453125	3	442.563005	1324.66719	-0.01235	-5.4657E-06	0.048281	2.1367E-05	0.035931	1.5902E-05	442.56292730721697	19.174	0.56056	19.174	18.79	19.35	0					27	19	2	0	0	0	0.3333	1	2045	2045		1.3296	0	1	28299	+		10071	22866	5654	5654	13082	13082					0.017838338588035185
FVAEFSVPLL	10	Unmodified	_FVAEFSVPLL_					0	0	0		ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.31689453125	2	561.3157	1120.61685	0.13062	7.3318E-05	0.61864	0.00034725	0.74926	0.00042057	561.3158095376741	94.267	1.6474	94.267	93.478	95.125	0					330	142	3	0	0	0	0.29978	1	25281	25281		20.454	1.1966	1	2649200			10072	6387	5655	5655	13083	13083					0.06136370796957635
FVAEPVALLV	10	Unmodified	_FVAEPVALLV_					0	0	0			REV__ENSG00000135577|ENST00000258042|NMBR	REV__ENSG00000135577|ENST00000258042|NMBR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3297729492188	2	529.318243	1056.62193	0.51222	0.00027113	-1.5323	-0.00081109	-1.0201	-0.00053996	529.8198347214666	43.292	0.43747	43.376	43.166	43.604	0.083996					21	15	2	0	0	0	0.35558	1	9462	9462		11.64	4.9171	1	166220	+		10073	15749	5656	5656	13084	13084					0.0958867465953972
FVAGLSELF	9	Unmodified	_FVAGLSELF_					0	0	0			REV__ENSG00000007541|ENST00000321878|PIGQ	REV__ENSG00000007541|ENST00000321878|PIGQ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2812194824219	2	491.765843	981.517133	0.52588	0.00025861	-2.1943	-0.0010791	-1.6684	-0.00082045	491.76534121128736	76.729	0.45416	76.697	76.422	76.877	-0.031487					38	16	3	0	0	0	0.1669	1	19729	19729		28.487	6.7402	1	128670	+		10074	13388	5657	5657	13085	13085					0.025635531829948377
FVAGVLPFK	9	Unmodified	_FVAGVLPFK_					0	0	0		ENSG00000137996|ENST00000370128|RTCA;nc|ENSG00000137996|O00442-2|RTCA	ENSG00000137996|ENST00000370128|RTCA	ENSG00000137996|ENST00000370128|RTCA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2945251464844	2	489.294571	976.574589	0.73301	0.00035866	0.030253	1.4803E-05	0.76326	0.00037346	489.2944726888392	60.734	0.52781	60.734	60.495	61.022	0					38	18	3	0	0	0	0.017871	2	14899	14845;14899		67.344	49.209	1	853540			10075	4103	5658	5658	13086;13087	13087					0.08536440179216243
FVAGVLPFK	9	Unmodified	_FVAGVLPFK_					0	0	0		ENSG00000137996|ENST00000370128|RTCA;nc|ENSG00000137996|O00442-2|RTCA	ENSG00000137996|ENST00000370128|RTCA	ENSG00000137996|ENST00000370128|RTCA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.295166015625	2	489.294571	976.574589	0.75601	0.00036991	0.054808	2.6817E-05	0.81082	0.00039673	489.2946232473281	60.648	0.53675	60.638	60.431	60.968	-0.0094566					37	19	3	0	0	0	0.017871	1	14846	14846		67.344	49.209	1	598570			10076	4103	5658	5658	13088	13088					0.08536440179216243
FVAGVLPFK	9	Unmodified	_FVAGVLPFK_					0	0	0		ENSG00000137996|ENST00000370128|RTCA;nc|ENSG00000137996|O00442-2|RTCA	ENSG00000137996|ENST00000370128|RTCA	ENSG00000137996|ENST00000370128|RTCA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	489.294571	976.574589	0.70273	0.00034384	-0.079727	-3.901E-05	0.623	0.00030483	489.294495542489	60.573	0.47674	60.67	60.449	60.925	0.096985	-0.011018	-6.829E-05	NaN	67.344	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	692590			10077	4103	5658	5658							0.08536440179216243
FVAGVLTASL	10	Unmodified	_FVAGVLTASL_					0	0	0		nc|ENSG00000087088|Q07812-6|BAX;nc|ENSG00000087088|Q07812-4|BAX;nc|ENSG00000087088|Q07812-7|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENST00000513545.5_1_19:49458896-49464890:+|nuORF;ENSG00000087088|ENST00000345358|BAX	nc|ENSG00000087088|Q07812-6|BAX	nc|ENSG00000087088|Q07812-6|BAX	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2949523925781	2	489.286943	976.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.633	1	60.73	60.23	61.23	0.096985								0	0	0	0.2948	1	14836	14836		28.487	5.3384	1				10078	1295	5659	5659	13089	13089					0.07011528591351635
FVAMQTGEPF	10	Unmodified	_FVAMQTGEPF_					0	0	0			REV__ENST00000523637.2_1_8:9953486-10177544:+|nuORF	REV__ENST00000523637.2_1_8:9953486-10177544:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.2681274414062	2	563.765517	1125.51648	0.88249	0.00049752	-0.12459	-7.0241E-05	0.7579	0.00042728	563.7654966180968	55.978	0.4401	56.049	55.854	56.294	0.070885					27	15	2	0	0	0	0.29038	1	13412	13412		13.042	0	1	645310	+		10079	17910	5660	5660	13090	13090					-0.041256095283642935
FVARNGRQF	9	Unmodified	_FVARNGRQF_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.31640625	2	547.796332	1093.57811	0.36164	0.00019811	0.73734	0.00040391	1.099	0.00060202	547.7979388104928	65.079	1.565	65.168	64.112	65.677	0.088882					86	57	2	0	0	0	0.19839	1	16181	16181		28.487	4.4663	1	365150			10080	1512	5661	5661	13091	13091					0.03506503005792183
FVARTECPT	9	Unmodified	_FVARTECPT_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2494506835938	2	512.250034	1022.48552	0.30138	0.00015438	-1.2598	-0.00064531	-0.95839	-0.00049093	512.2491954684448	80.012	0.55219	80.012	79.77	80.322	0					50	19	3	0	0	0	0.15219	1	20834	20834		30.637	0.41173	1	416910			10081	3530	5662	5662	13092	13092					-0.02482762842601005
FVASKESCRCF	11	Unmodified	_FVASKESCRCF_					0	0	0			REV__ENST00000490980.1_1_10:99080712-99081474:+|nuORF	REV__ENST00000490980.1_1_10:99080712-99081474:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.794189453125	2	638.794283	1275.57401	0.56522	0.00036106	-0.088273	-5.6388E-05	0.47694	0.00030467	638.7941336766964	21.527	0.34548	21.477	21.316	21.661	-0.049377					18	11	2	0	0	0	0.47633	1	2909	2909		0.26902	0.26902	1	70327	+		10082	21609	5663	5663	13093	13093					-0.05275090594432186
FVASKESCRCF	11	Unmodified	_FVASKESCRCF_					0	0	0			REV__ENST00000490980.1_1_10:99080712-99081474:+|nuORF	REV__ENST00000490980.1_1_10:99080712-99081474:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	638.794283	1275.57401	0.38673	0.00024704	0.1468	9.3777E-05	0.53353	0.00034082	638.79426590223	21.473	0.28902	21.473	21.338	21.627	0	-0.0035973	0.00027508	NaN	0.26902	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59377	+		10083	21609	5663	5663							-0.05275090594432186
FVASKESCRCF	11	Unmodified	_FVASKESCRCF_					0	0	0			REV__ENST00000490980.1_1_10:99080712-99081474:+|nuORF	REV__ENST00000490980.1_1_10:99080712-99081474:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	638.794283	1275.57401	0.64126	0.00040963	-0.40034	-0.00025573	0.24092	0.0001539	638.794117132578	21.579	0.3264	21.479	21.308	21.635	-0.10034	0.0024342	-0.00042394	NaN	0.26902	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53493	+		10084	21609	5663	5663							-0.05275090594432186
FVASKESCRCF	11	Unmodified	_FVASKESCRCF_					0	0	0			REV__ENST00000490980.1_1_10:99080712-99081474:+|nuORF	REV__ENST00000490980.1_1_10:99080712-99081474:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	638.794283	1275.57401	0.56522	0.00036106	-0.088273	-5.6388E-05	0.47694	0.00030467	638.7941336766964	21.527	0.34548	21.477	21.316	21.661	-0.049377	0.0011632	-2.5247E-05	NaN	0.26902	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70327	+		10085	21609	5663	5663							-0.05275090594432186
FVATQTSLNI	10	Unmodified	_FVATQTSLNI_					0	0	0		ENST00000270649.10_1_19:52518942-52519062:-|nuORF	ENST00000270649.10_1_19:52518942-52519062:-|nuORF	ENST00000270649.10_1_19:52518942-52519062:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8160400390625	2	547.298039	1092.58152	0.55815	0.00030547	-3.7987	-0.002079	-3.2405	-0.0017735	547.79734430343	63.15	0.43539	63.141	63.024	63.459	-0.0085526					19	15	2	0	0	0	0.19885	1	15704	15704		32.786	2.9451	1	408130			10086	9081	5664	5664	13094	13094					0.038937082691290925
FVATQTSLNI	10	Unmodified	_FVATQTSLNI_					0	0	0		ENST00000270649.10_1_19:52518942-52519062:-|nuORF	ENST00000270649.10_1_19:52518942-52519062:-|nuORF	ENST00000270649.10_1_19:52518942-52519062:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	547.298039	1092.58152	0.4582	0.00025077	-2.3622	-0.0012928	-1.904	-0.001042	547.7978560064985	63.244	0.45887	63.244	62.93	63.389	0	0.051625	0.00075608	NaN	32.786	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187510			10087	9081	5664	5664							0.038937082691290925
FVAWMHFLV	9	Unmodified	_FVAWMHFLV_					0	0	0		ENSG00000148344|ENST00000340607|PTGES	ENSG00000148344|ENST00000340607|PTGES	ENSG00000148344|ENST00000340607|PTGES	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.318603515625	2	575.29933	1148.58411	0.34318	0.00019743	1.6563	0.00095288	1.9995	0.0011503	575.3010056832829	57.001	0.45028	57.001	56.823	57.273	0					35	16	3	0	0	0	0.22431	1	13697	13697		20.871	0.41758	1	265440			10088	4806	5665	5665	13095	13095					0.015758851930968376
FVCDVLPLI	9	Carbamidomethyl (C)	_FVC(Carbamidomethyl (C))DVLPLI_	FVC(1)DVLPLI		FVC(40)DVLPLI		0	1	0		ENSG00000104613|ENST00000397977|INTS10;ENST00000523869.1_2_8:19675786-19680957:+|nuORF;ENST00000522081.1_1_8:19680006-19681556:+|nuORF	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2952270507812	2	538.296453	1074.57835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.337	1	79.308	78.808	79.808	-0.028931								0	0	0	0.12531	1	20552	20552		40.449	6.0469	1				10089	1901	5666	5666	13096	13096	0				0.044047418907666724
FVDIVRVTY	9	Unmodified	_FVDIVRVTY_					0	0	0			REV__ENSG00000115233|ENST00000409682|PSMD14	REV__ENSG00000115233|ENST00000409682|PSMD14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2965698242188	2	556.310949	1110.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.82	1	100.84	100.34	101.34	0.027206								0	0	0	0.24715	1	26915	26915		7.2892	2.5332	1		+		10090	14867	5667	5667	13097	13097					0.0564660251143323
FVDVGGILH	9	Unmodified	_FVDVGGILH_					0	0	0			REV__ENSG00000254466|ENST00000530162|OR4D10	REV__ENSG00000254466|ENST00000530162|OR4D10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7821960449219	2	478.763635	955.512717	0.42833	0.00020507	0.15364	7.3558E-05	0.58197	0.00027863	478.763596139684	65.796	0.6656	65.796	65.545	66.211	0					60	23	3	0	0	0	0.24739	1	16543	16543		4.756	0	1	756510	+		10091	19235	5668	5668	13098	13098					0.03318088760113369
FVEGELRDVF	10	Unmodified	_FVEGELRDVF_					0	0	0			REV__ACAN|p.P1841Lfs*10|1|0.28|ENSG00000157766|chr15:88858104-88858104|C/-|frameshift_variant	REV__ACAN|p.P1841Lfs*10|1|0.28|ENSG00000157766|chr15:88858104-88858104|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.3220825195312	2	605.808771	1209.60299	0.3893	0.00023584	-0.5095	-0.00030866	-0.12021	-7.2821E-05	605.807863126749	76.263	0.63434	76.231	76.02	76.654	-0.031487					45	22	3	0	0	0	0.31289	1	19638	19638		13.906	0	1	459630	+		10092	13069	5669	5669	13099	13099					0.006570932978547717
FVEGELRDVF	10	Unmodified	_FVEGELRDVF_					0	0	0			REV__ACAN|p.P1841Lfs*10|1|0.28|ENSG00000157766|chr15:88858104-88858104|C/-|frameshift_variant	REV__ACAN|p.P1841Lfs*10|1|0.28|ENSG00000157766|chr15:88858104-88858104|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	605.808771	1209.60299	0.33549	0.00020324	-0.46264	-0.00028027	-0.12715	-7.7029E-05	605.8081202034665	76.205	0.64785	76.205	76.021	76.668	0	-0.017409	0.00022761	NaN	13.906	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331370	+		10093	13069	5669	5669							0.006570932978547717
FVEGELRDVF	10	Unmodified	_FVEGELRDVF_					0	0	0			REV__ACAN|p.P1841Lfs*10|1|0.28|ENSG00000157766|chr15:88858104-88858104|C/-|frameshift_variant	REV__ACAN|p.P1841Lfs*10|1|0.28|ENSG00000157766|chr15:88858104-88858104|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	605.808771	1209.60299	0.35767	0.00021668	-1.5026	-0.00091028	-1.1449	-0.0006936	605.8074512742219	76.177	0.64488	76.231	76.02	76.665	0.053413	0.008378	-0.0010324	NaN	13.906	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422130	+		10094	13069	5669	5669							0.006570932978547717
FVEHLKVIN	9	Unmodified	_FVEHLKVIN_					0	0	0			REV__nc|ENSG00000100784|O75582-2|RPS6KA5	REV__nc|ENSG00000100784|O75582-2|RPS6KA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2794799804688	2	549.818941	1097.62333	0.16544	9.0962E-05	1.1962	0.00065771	1.3617	0.00074868	550.3212238677713	73.662	0.44336	73.662	73.417	73.86	0					21	15	2	0	0	0	0.22596	1	18845	18845		21.747	4.8044	1	143000	+		10095	14229	5670	5670	13100	13100					0.07842308748354299
FVENFDDMEM	10	Unmodified	_FVENFDDMEM_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.2457580566406	3	426.166868	1275.47878	-0.0061581	-2.6244E-06	1.8005	0.00076733	1.7944	0.0007647	426.16761815728233	79.818	0.47144	79.789	79.668	80.14	-0.028931					27	16	2	0	0	0	0.32033	1	20724	20724		0.77653	0	1	157980	+		10096	13298	5671	5671	13101	13101					-0.14794488576148979
FVEQLAHKF	9	Unmodified	_FVEQLAHKF_					0	0	0		nc|ENSG00000169604|Q9H6X2-2|ANTXR1;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1;nc|ENSG00000169604|Q9H6X2-3|ANTXR1;ENST00000463335.1_1_2:69240622-69330161:+|nuORF;nc|ENSG00000169604|Q9H6X2-4|ANTXR1;nc|ENSG00000169604|Q9H6X2-6|ANTXR1	nc|ENSG00000169604|Q9H6X2-2|ANTXR1	nc|ENSG00000169604|Q9H6X2-2|ANTXR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2734985351562	2	559.803291	1117.59203	0.50709	0.00028387	0.24856	0.00013914	0.75565	0.00042301	559.8033569596797	64.54	0.49244	64.54	64.288	64.781	0					27	17	2	0	0	0	0.2322	1	16004	16004		20.454	8.8133	1	159380			10097	6368	5672	5672	13102	13102					0.03793735714225477
FVEQLPKAY	9	Unmodified	_FVEQLPKAY_					0	0	0		ENST00000367608.6_1_6:142688909-142691321:+|nuORF	ENST00000367608.6_1_6:142688909-142691321:+|nuORF	ENST00000367608.6_1_6:142688909-142691321:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3136596679688	2	547.797675	1093.5808	0.50648	0.00027745	-1.6158	-0.00088515	-1.1094	-0.0006077	547.7978135179395	69.886	0.65527	69.864	69.755	70.41	-0.022079					39	23	2	0	0	0	0.22674	1	17804	17804		17.113	0	1	134710			10098	9744	5673	5673	13103	13103					0.03774913620100051
FVERVELV	8	Unmodified	_FVERVELV_					0	0	0			REV__L1MEd_dup15098|chr11:58701671-58702207:-|2.301336854408765|0.2365330646104148|3.28|511.0|4|1|sense	REV__L1MEd_dup15098|chr11:58701671-58702207:-|2.301336854408765|0.2365330646104148|3.28|511.0|4|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7845458984375	2	495.784567	989.554582	0.65139	0.00032295	0.36583	0.00018137	1.0172	0.00050432	495.7845243793055	53.918	0.54039	53.918	53.622	54.162	0					41	19	4	0	0	0	0.23736	1	12767	12767		37.974	11.09	1	704560	+		10099	22803	5674	5674	13104	13104					0.0593864444861083
FVERVELV	8	Unmodified	_FVERVELV_					0	0	0			REV__L1MEd_dup15098|chr11:58701671-58702207:-|2.301336854408765|0.2365330646104148|3.28|511.0|4|1|sense	REV__L1MEd_dup15098|chr11:58701671-58702207:-|2.301336854408765|0.2365330646104148|3.28|511.0|4|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7845458984375	2	495.784567	989.554582	0.50127	0.00024852	0.24237	0.00012016	0.74363	0.00036868	495.78435217352745	54.04	0.54416	54.024	53.738	54.282	-0.015923					46	19	3	0	0	0	0.25425	1	12792	12792		36.044	5.8194	1	781150	+		10100	22803	5674	5674	13105	13105					0.0593864444861083
FVESAPVLR	9	Unmodified	_FVESAPVLR_					0	0	0			REV__ENST00000593068.6_2_19:1010069-1010321:-|nuORF	REV__ENST00000593068.6_2_19:1010069-1010321:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8108825683594	2	509.290017	1016.56548	0.29235	0.00014889	0.29273	0.00014908	0.58508	0.00029797	509.290367844927	58.862	0.72058	58.954	58.74	59.46	0.091305					42	25	2	0	0	0	0.2451	1	14292	14292		10.824	0	1	208990	+		10101	22578	5675	5675	13106	13106					0.057860468229023354
FVETLYLAW	9	Unmodified	_FVETLYLAW_					0	0	0			REV__BANK1|p.T113Lfs*6|1|0.17|ENSG00000153064|chr4:101830074-101830074|A/-|frameshift_variant	REV__BANK1|p.T113Lfs*6|1|0.17|ENSG00000153064|chr4:101830074-101830074|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2800903320312	2	571.30005	1140.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.12	1	54.12	53.62	54.62	0								0	0	0	0.23367	1	12829	12829		11.64	0.14559	1		+		10102	13122	5676	5676	13107	13107					0.02087797762851551
FVETPRGLQT	10	Unmodified	_FVETPRGLQT_					0	0	0		ENST00000474162.1_1_5:60686735-60687614:-|nuORF	ENST00000474162.1_1_5:60686735-60687614:-|nuORF	ENST00000474162.1_1_5:60686735-60687614:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.7784423828125	2	574.308938	1146.60332	0.73694	0.00042323	-0.69178	-0.00039729	0.045165	2.5938E-05	574.3085340168549	48.356	0.31874	48.404	48.181	48.5	0.047523					15	11	2	0	0	0	0.31358	1	11051	11051		13.906	2.2658	1	119930			10103	10916	5677	5677	13108	13108					0.03588513017712103
FVETPRGLQT	10	Unmodified	_FVETPRGLQT_					0	0	0		ENST00000474162.1_1_5:60686735-60687614:-|nuORF	ENST00000474162.1_1_5:60686735-60687614:-|nuORF	ENST00000474162.1_1_5:60686735-60687614:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	574.308938	1146.60332	0.48232	0.000277	-0.77064	-0.00044258	-0.28832	-0.00016558	574.3084146918343	48.332	0.29123	48.376	48.191	48.483	0.04332	-0.00041491	7.5469E-05	NaN	13.906	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198640			10104	10916	5677	5677							0.03588513017712103
FVEVESIKRH	10	Unmodified	_FVEVESIKRH_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3462524414062	2	622.343312	1242.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.412	1	88.502	88.002	89.002	0.089195								0	0	0	0.36126	1	23348	23348		10.074	2.9722	1				10105	3321	5678	5678	13109	13109					0.06044177317426147
FVFDDVAQF	9	Unmodified	_FVFDDVAQF_					0	0	0		MER47A_dup1739|chr11:114314732-114315040:+|1.9862550910181491|0.3000904151932887|2.73|534.0|10|3|sense	MER47A_dup1739|chr11:114314732-114315040:+|1.9862550910181491|0.3000904151932887|2.73|534.0|10|3|sense	MER47A_dup1739|chr11:114314732-114315040:+|1.9862550910181491|0.3000904151932887|2.73|534.0|10|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.3657836914062	2	544.258382	1086.50221	0.52474	0.0002856	0.24669	0.00013426	0.77144	0.00041986	544.2583939892501	49.534	1.4627	49.534	48.944	50.407	0					67	53	2	0	0	0	0.2322	1	11464	11464		14.838	5.4908	1	255860			10106	12533	5679	5679	13110	13110					-0.037579386849984076
FVFDDVAQF	9	Unmodified	_FVFDDVAQF_					0	0	0		MER47A_dup1739|chr11:114314732-114315040:+|1.9862550910181491|0.3000904151932887|2.73|534.0|10|3|sense	MER47A_dup1739|chr11:114314732-114315040:+|1.9862550910181491|0.3000904151932887|2.73|534.0|10|3|sense	MER47A_dup1739|chr11:114314732-114315040:+|1.9862550910181491|0.3000904151932887|2.73|534.0|10|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3656005859375	2	544.258382	1086.50221	0.58214	0.00031683	0.31158	0.00016958	0.89372	0.00048641	544.2585242042363	49.397	1.4336	49.429	49.072	50.506	0.032043					66	52	2	0	0	0	0.2322	1	11453	11453		20.454	11.106	1	180090			10107	12533	5679	5679	13111	13111					-0.037579386849984076
FVFDVMNLL	9	Unmodified	_FVFDVMNLL_					0	0	0		nc|ENSG00000134028|O15204-2|ADAMDEC1;ENSG00000134028|ENST00000256412|ADAMDEC1	nc|ENSG00000134028|O15204-2|ADAMDEC1	nc|ENSG00000134028|O15204-2|ADAMDEC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7598876953125	2	549.288628	1096.5627	0.66252	0.00036391	3.9685	0.0021799	4.631	0.0025438	549.2893456051958	78.924	0.22378	78.982	78.893	79.117	0.058151					13	9	2	0	0	0	0.24688	1	20442	20442		14.838	3.198	1	70528			10108	3748	5680	5680	13112	13112					0.018284553737430542
FVFEHVWF	8	Unmodified	_FVFEHVWF_					0	0	0		ENST00000511171.5_1_6:33748933-33749074:-|nuORF	ENST00000511171.5_1_6:33748933-33749074:-|nuORF	ENST00000511171.5_1_6:33748933-33749074:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2924194335938	2	555.774003	1109.53345	0.098456	5.4719E-05	-4.4738	-0.0024864	-4.3753	-0.0024317	556.2729810481195	73.592	0.1638	73.592	73.497	73.661	0					6	5	2	0	0	0	0.41716	1	18832	18832		17.087	5.9721	1	74635			10109	11381	5681	5681	13113	13113					-0.016933208602495142
FVFLGHQTF	9	Unmodified	_FVFLGHQTF_					0	0	0		AXL|p.L118F|1|0.2|ENSG00000167601|chr19:41221191-41221191|G/C|missense_variant	AXL|p.L118F|1|0.2|ENSG00000167601|chr19:41221191-41221191|G/C|missense_variant	AXL|p.L118F|1|0.2|ENSG00000167601|chr19:41221191-41221191|G/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2449951171875	2	548.284734	1094.55492	0.51258	0.00028104	-1.7796	-0.00097571	-1.267	-0.00069467	549.2852766752206	48.825	0.78771	48.825	48.504	49.292	0					73	28	4	0	0	0	0.24739	1	11298	11298		13.508	0	1	967050			10110	65	5682	5682	13114	13114					0.011420641684708244
FVFLPLSSGAH	11	Unmodified	_FVFLPLSSGAH_					0	0	0		ENST00000528300.5_1_14:50459574-50472442:-|nuORF	ENST00000528300.5_1_14:50459574-50472442:-|nuORF	ENST00000528300.5_1_14:50459574-50472442:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.8162841796875	2	587.816399	1173.61824	0.51628	0.00030348	-1.1067	-0.00065055	-0.59045	-0.00034708	587.8160787270575	91.156	0.48299	91.157	91.009	91.492	0.00046539					84	30	4	0	0	0	0.46277	1	24204	24204		2.9952	0.26005	1	957350			10111	11582	5683	5683	13115	13115					0.03838004885733426
FVFLRFFA	8	Unmodified	_FVFLRFFA_					0	0	0		ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2	ENSG00000155903|ENST00000286364|RASA2	ENSG00000155903|ENST00000286364|RASA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2589111328125	2	523.794738	1045.57492	0.50557	0.00026482	-0.0021031	-1.1016E-06	0.50347	0.00026371	523.7946975646001	43.786	0.36358	43.87	43.631	43.995	0.083996					16	13	2	0	0	0	0.34185	1	9659	9659		5.7604	0	1	219700			10112	5203	5684	5684	13116	13116					0.05395859899090283
FVFSSFITF	9	Unmodified	_FVFSSFITF_					0	0	0			REV__nc|ENSG00000113161|P04035-2|HMGCR	REV__nc|ENSG00000113161|P04035-2|HMGCR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2449951171875	2	547.781493	1093.54843	0.55243	0.00030261	2.8202	0.0015448	3.3726	0.0018475	548.2853444605008	49.155	0.14074	49.155	49.05	49.19	0					6	4	2	0	0	0	0.24739	1	11298	11298		13.508	4.1604	1	103850	+		10113	14796	5685	5685	13117	13117					0.005401262170835253
FVFVFFSE	8	Unmodified	_FVFVFFSE_					0	0	0			REV__ENST00000228506.7_1_12:121136755-121136905:+|nuORF	REV__ENST00000228506.7_1_12:121136755-121136905:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.25347900390625	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.72	1	118.75	118.25	119.25	0.026253								0	0	0	0.37992	1	30733	30733		0.79363	0	1		+		10114	19450	5686	5686	13118	13118					-0.01375831845700759
FVGAADSDLR	10	Unmodified	_FVGAADSDLR_					0	0	0			REV__ENSG00000105849|ENST00000222567|POLR1F	REV__ENSG00000105849|ENST00000222567|POLR1F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2847900390625	2	525.764363	1049.51417	0.53957	0.00028369	0.28028	0.00014736	0.81986	0.00043105	525.7644383564882	63.145	0.7829	63.241	62.957	63.74	0.095722					40	27	2	0	0	0	0.3144	1	15604	15604		13.042	1.4022	1	535530	+		10115	14491	5687	5687	13119	13119					-0.008603219418091612
FVGATLSKFFF	11	Unmodified	_FVGATLSKFFF_					0	0	0			REV__ENSG00000136449|ENST00000323776|MYCBPAP	REV__ENSG00000136449|ENST00000323776|MYCBPAP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.8895568847656	3	421.897258	1262.66995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.032	1	42.032	41.532	42.532	0								0	0	0	0.3255	1	9111	9111		7.846	0	1		+		10116	15809	5688	5688	13120	13120					0.0491174857961596
FVGGLPPEL	9	Unmodified	_FVGGLPPEL_					0	0	0		nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7604675292969	2	464.760561	927.506569	0.31018	0.00014416	-0.13922	-6.4704E-05	0.17096	7.9453E-05	464.7604795428447	74.546	0.561	74.546	74.286	74.847	0					33	19	2	0	0	0	0.193	1	19127	19127		24.674	24.674	1	464060			10117	7154	5689	5689	13121	13121					0.03991570528569355
FVGGLPPEL	9	Unmodified	_FVGGLPPEL_					0	0	0		nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7607727050781	2	464.760561	927.506569	-0.010527	-4.8926E-06	0.61131	0.00028411	0.60079	0.00027922	464.760920862256	74.442	0.84418	74.495	74.207	75.051	0.052361					42	29	2	0	0	0	0.193	1	19089	19089		24.674	1.5255	1	500340			10118	7154	5689	5689	13122	13122					0.03991570528569355
FVGGLPPEL	9	Unmodified	_FVGGLPPEL_					0	0	0		nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	nc|ENSG00000179915|Q9ULB1|NRXN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7602233886719	2	464.760561	927.506569	0.38725	0.00017998	0.38258	0.00017781	0.76983	0.00035779	464.76089859106645	74.64	0.81506	74.609	74.295	75.11	-0.030945					43	28	2	0	0	0	0.193	1	19101	19101		24.674	0	1	604120			10119	7154	5689	5689	13123	13123					0.03991570528569355
FVGIDWELI	9	Unmodified	_FVGIDWELI_					0	0	0			REV__ENST00000327492.3_1_22:41829567-41829639:-|nuORF	REV__ENST00000327492.3_1_22:41829567-41829639:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.3088989257812	2	546.292225	1090.5699	0.56225	0.00030715	-1.1406	-0.00062308	-0.57831	-0.00031593	546.2923393898201	66.458	0.92628	66.458	66.068	66.994	0					46	32	2	0	0	0	0.23147	1	16798	16798		8.5933	0	1	171910	+		10120	20009	5690	5690	13124	13124					0.028235112458105505
FVGLRGRRQ	9	Unmodified	_FVGLRGRRQ_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8193359375	2	544.825424	1087.63629	0.68227	0.00037172	-0.73753	-0.00040183	-0.055266	-3.011E-05	544.8246054056643	88.175	0.99753	88.172	87.852	88.849	-0.0028458					124	47	3	0	0	0	0.32733	1	23424	23424		4.756	4.756	1	1048300			10121	393	5691	5691	13125	13125					0.09598184651076735
FVGQSPVLF	9	Unmodified	_FVGQSPVLF_					0	0	0			REV__nc|ENSG00000069702|Q03167-2|TGFBR3	REV__nc|ENSG00000069702|Q03167-2|TGFBR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.2734069824219	2	497.273835	992.533118	0.40607	0.00020193	-0.12866	-6.398E-05	0.27741	0.00013795	497.27339354232726	79.839	1.0068	79.9	79.335	80.342	0.061409					80	38	3	0	0	0	0.14076	2	20666	20666;20767		32.305	3.2239	1	301890	+		10122	13714	5692	5692	13126;13127	13126					0.036552594199065425
FVGQSPVLF	9	Unmodified	_FVGQSPVLF_					0	0	0			REV__nc|ENSG00000069702|Q03167-2|TGFBR3	REV__nc|ENSG00000069702|Q03167-2|TGFBR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2734680175781	2	497.273835	992.533118	0.39359	0.00019572	-0.33842	-0.00016829	0.055176	2.7438E-05	497.273481021663	79.865	1.1247	79.836	79.348	80.473	-0.028931					70	40	3	0	0	0	0.14076	1	20731	20731		32.305	3.2239	1	253840	+		10123	13714	5692	5692	13128	13128					0.036552594199065425
FVGTLQYLAP	10	Unmodified	_FVGTLQYLAP_					0	0	0		ENSG00000213341|ENST00000370397|CHUK;CHUK|p.W511Gfs*46|1|0.28|ENSG00000213341|chr10:100202126-100202126|A/-|frameshift_variant;nc|ENSG00000104365|O14920-3|IKBKB;ENST00000518647.5_1_8:42129618-42174557:+|nuORF;ENST00000517917.5_1_8:42128977-42177019:+|nuORF;ENST00000520201.5_1_8:42129679-42177019:+|nuORF;ENST00000342222.6_1_8:42151073-42188494:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB	ENSG00000213341|ENST00000370397|CHUK;ENST00000342222.6_1_8:42151073-42188494:+|nuORF	ENSG00000213341|ENST00000370397|CHUK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3194580078125	2	554.8055	1107.59645	0.80813	0.00044836	1.6073	0.00089175	2.4155	0.0013401	554.8063699215877	47.337	0.69323	47.392	47.064	47.757	0.054375					69	25	4	0	0	0	0.26638	1	10641	10641		30.637	10.183	1	499310			10124	8340;1885	5693	5693	13129	13129					0.04695200137143729
FVHGGIQTLFI	11	Unmodified	_FVHGGIQTLFI_					0	0	0		nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.32177734375	2	616.345323	1230.67609	0.31036	0.00019129	-1.6512	-0.0010177	-1.3408	-0.00082641	616.3439300822974	46.768	0.65453	46.768	46.458	47.112	0					44	22	3	0	0	0	0.30294	1	10559	10559		24.991	2.2547	1	1296700			10125	12984	5694	5694	13130	13130					0.0699826681113791
FVHLPERPVG	10	Unmodified	_FVHLPERPVG_					0	0	0		ENST00000539664.2_1_7:28995002-28995176:-|nuORF	ENST00000539664.2_1_7:28995002-28995176:-|nuORF	ENST00000539664.2_1_7:28995002-28995176:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.27001953125	2	575.822015	1149.62948	0.73732	0.00042456	-0.52743	-0.00030371	0.20989	0.00012086	575.8216553474738	48.087	0.53059	48.135	47.994	48.524	0.047523					29	19	2	0	0	0	0.318	1	11062	11062		3.9444	0	1	369470			10126	11710	5695	5695	13131	13131					0.06064826979832105
FVIHISDSIL	10	Unmodified	_FVIHISDSIL_					0	0	0		ENST00000426052.6_1_3:170110523-170110649:+|nuORF	ENST00000426052.6_1_3:170110523-170110649:+|nuORF	ENST00000426052.6_1_3:170110523-170110649:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.8434448242188	2	572.324057	1142.63356	0.58593	0.00033534	-0.57177	-0.00032724	0.014158	8.1032E-06	572.3235252432631	40.224	0.61597	40.316	40.051	40.667	0.092674					33	21	2	0	0	0	0.31745	1	8660	8660		4.3292	0	1	330920			10127	10415	5696	5696	13132	13132					0.06794871682905068
FVIIAFASLWI	11	Unmodified	_FVIIAFASLWI_					0	0	0			REV__ENSG00000182858|ENST00000330817|ALG12	REV__ENSG00000182858|ENST00000330817|ALG12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.75262451171875	3	427.253154	1278.73763	0.18356	7.8427E-05	-3.1905	-0.0013631	-3.0069	-0.0012847	427.2516035939902	64.079	0.46642	64.069	63.794	64.26	-0.0095291					19	16	2	0	0	0	0.33202	1	15879	15879		2.8433	0.75728	1	98712	+		10128	18222	5697	5697	13133	13133					0.10941198510408867
FVIIGILMNV	10	Unmodified	_FVIIGILMNV_					0	0	0			REV__ENST00000465256.5_1_1:32201179-32202160:-|nuORF	REV__ENST00000465256.5_1_1:32201179-32202160:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8360595703125	2	559.835746	1117.65694	0.3231	0.00018088	-0.33173	-0.00018572	-0.0086374	-4.8355E-06	559.8353354887751	66.812	0.65282	66.812	66.482	67.135	0					45	22	3	0	0	0	0.34325	1	16751	16751		13.906	0.86358	1	290530	+		10129	15130	5698	5698	13134	13134					0.10281594195862453
FVIWRHRL	8	Unmodified	_FVIWRHRL_					0	0	0			REV__ENST00000467850.1_1_2:206629136-206659779:+|nuORF	REV__ENST00000467850.1_1_2:206629136-206659779:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8349609375	2	563.83526	1125.65597	-0.059101	-3.3323E-05	-0.54844	-0.00030923	-0.60754	-0.00034255	563.8349202861649	13.457	0.73526	13.457	13.227	13.962	0					74	25	4	0	0	0	0.4397	1	462	462		9.3474	3.6156	1	380950	+		10130	21309	5699	5699	13135	13135					0.09816560661829499
FVIWRHRL	8	Unmodified	_FVIWRHRL_					0	0	0			REV__ENST00000467850.1_1_2:206629136-206659779:+|nuORF	REV__ENST00000467850.1_1_2:206629136-206659779:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.8349609375	2	563.83526	1125.65597	-0.116	-6.5406E-05	-0.38008	-0.0002143	-0.49608	-0.00027971	563.8349678870013	13.52	0.84655	13.452	13.189	14.035	-0.067495					74	29	4	0	0	0	0.42758	1	440	440		13.508	4.9146	1	371400	+		10131	21309	5699	5699	13136	13136					0.09816560661829499
FVKEGEFHEG	10	Unmodified	_FVKEGEFHEG_					0	0	0			REV__ENSG00000153002|ENST00000282957|CPB1	REV__ENSG00000153002|ENST00000282957|CPB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.3272705078125	2	589.77747	1177.54039	0.35605	0.00020999	0.28881	0.00017033	0.64486	0.00038032	589.7771116763257	59.095	0.24305	59.186	59.047	59.29	0.091301					14	8	2	0	0	0	0.31691	1	14372	14372		9.3831	1.473	1	120610	+		10132	16605	5700	5700	13137	13137					-0.04128052770306567
FVKEQVAVGFN	11	Unmodified	_FVKEQVAVGFN_					0	0	0			REV__ENST00000560420.1_1_14:24606925-24607473:+|nuORF	REV__ENST00000560420.1_1_14:24606925-24607473:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.3163452148438	2	619.332413	1236.65027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.263	1	52.263	51.763	52.763	0								0	0	0	0.34476	1	12257	12257		9.3831	0.63772	1		+		10133	14073	5701	5701	13138	13138					0.04141372568869883
FVKERIPK	8	Unmodified	_FVKERIPK_					0	0	0			REV__L1ME1_dup20737|chr11:12960950-12961643:-|1.3458112139085312|0.3279391910638228|2.04|537.0|13|2|sense	REV__L1ME1_dup20737|chr11:12960950-12961643:-|1.3458112139085312|0.3279391910638228|2.04|537.0|13|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8161926269531	2	508.816202	1015.61785	-0.040993	-2.0858E-05	-0.17777	-9.0453E-05	-0.21876	-0.00011131	508.816769989177	39.023	2.7919	39.023	38.649	41.441	0					345	101	5	0	0	0	0.33441	1	8786	8786		26.884	2.8631	1	80412000	+		10134	22793	5702	5702	13139	13139					0.11066629956519591
FVKFQFQRF	9	Unmodified	_FVKFQFQRF_					0	0	0		ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000149403|ENST00000527524|GRIK4	ENST00000533291.5_1_11:120531027-120833419:+|nuORF	ENST00000533291.5_1_11:120531027-120833419:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.22784423828125	3	416.229231	1245.66586	0.27511	0.00011451	-2.1683	-0.0009025	-1.8932	-0.00078799	416.22819275208684	29.846	0.78414	29.858	29.389	30.173	0.012264					59	26	4	0	0	0	0.259	1	5400	5400		5.2969	1.1074	1	156480			10135	4863	5703	5703	13140	13140					0.05285703876552361
FVKKVFPTCV	10	Unmodified	_FVKKVFPTCV_					0	0	0			REV__ENSG00000122863|ENST00000373115|CHST3	REV__ENSG00000122863|ENST00000373115|CHST3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.7448120117188	2	584.33337	1166.65219	0.41554	0.00024281	-0.25402	-0.00014843	0.16151	9.4377E-05	584.3337588185607	64.081	0.24416	64.174	64.04	64.284	0.092888					13	8	2	0	0	0	0.3156	1	15929	15929		10.824	1.4408	1	155360	+		10136	15174	5704	5704	13141	13141					0.07552710053118972
FVKVDSLPTI	10	Unmodified	_FVKVDSLPTI_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2921752929688	2	559.826432	1117.63831	0.10695	5.9875E-05	0.24136	0.00013512	0.34831	0.00019499	559.8262962397808	61.487	0.62879	61.487	61.207	61.836	0					42	23	2	0	0	0	0.31629	1	15068	15068		10.074	2.1638	1	580950	+		10137	16705;23038	5705	5705	13142	13142					0.08419755825661923
FVLCWFPF	8	Unmodified	_FVLCWFPF_					0	0	0		ENSG00000274286|ENST00000620793|ADRA2B;ENSG00000184160|ENST00000330055|ADRA2C;ENSG00000171873|ENST00000379453|ADRA1D	ENSG00000274286|ENST00000620793|ADRA2B	ENSG00000274286|ENST00000620793|ADRA2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3316650390625	2	529.762049	1057.50955	0.28521	0.00015109	-2.9791	-0.0015782	-2.6939	-0.0014271	530.2599943010445	73.522	0.10802	73.576	73.525	73.633	0.053841					5	3	2	0	0	0	0.33618	1	18796	18796		17.087	5.9721	1	37096			10138	6592	5706	5706	13143	13143					-0.016908776182617657
FVLDECQNL	9	Unmodified	_FVLDECQNL_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3217163085938	2	540.755149	1079.49575	0.33868	0.00018314	-3.8532	-0.0020837	-3.5145	-0.0019005	540.75344188126	42.704	0.15715	42.79	42.704	42.861	0.085197					6	5	2	0	0	0	0.24739	1	9306	9306		4.756	0.42677	1	96147			10139	3102	5707	5707	13144	13144					-0.040821999080208116
FVLEHALHI	9	Unmodified	_FVLEHALHI_					0	0	0			REV__Harlequin-int_dup274|chr7:135172831-135173811:+|1.6690129096142616|0.3270592348791503|2.35|542.0|82|3|anti-sense	REV__Harlequin-int_dup274|chr7:135172831-135173811:+|1.6690129096142616|0.3270592348791503|2.35|542.0|82|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3217163085938	2	539.805834	1077.59712	0.39071	0.00021091	0.070271	3.7933E-05	0.46098	0.00024884	539.8058108849394	43.04	0.75327	43.132	42.717	43.471	0.091362					73	27	3	0	0	0	0.23783	1	9315	9315		18.135	7.3111	1	795510	+		10140	22713	5708	5708	13145	13145					0.06142039576843672
FVLFCFFK	8	Unmodified	_FVLFCFFK_					0	0	0		ENST00000256689.9_1_12:46754616-46754751:-|nuORF	ENST00000256689.9_1_12:46754616-46754751:-|nuORF	ENST00000256689.9_1_12:46754616-46754751:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3084716796875	2	525.777699	1049.54085	0.57323	0.00030139	-1.4642	-0.00076983	-0.89093	-0.00046843	525.7768340027653	72.612	0.7639	72.665	72.408	73.172	0.053841					59	27	4	0	0	0	0.34147	1	18633	18633		11.114	2.5212	1	445040			10141	8932	5709	5709	13146	13146					0.018056954158055305
FVLFLTGQQ	9	Unmodified	_FVLFLTGQQ_					0	0	0			REV__ENST00000379284.1_1_6:13363649-13363736:-|nuORF	REV__ENST00000379284.1_1_6:13363649-13363736:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3048095703125	2	526.792392	1051.57023	0.40974	0.00021585	0.054389	2.8652E-05	0.46413	0.0002445	526.792525652869	57.299	1.3028	57.282	56.674	57.977	-0.0172					96	47	3	0	0	0	0.23235	1	13948	13948		16.149	5.9657	1	1729000	+		10142	20531	5710	5710	13147	13147					0.0465093096563578
FVLFLTGQQ	9	Unmodified	_FVLFLTGQQ_					0	0	0			REV__ENST00000379284.1_1_6:13363649-13363736:-|nuORF	REV__ENST00000379284.1_1_6:13363649-13363736:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	526.792392	1051.57023	0.45581	0.00024012	0.031751	1.6726E-05	0.48756	0.00025685	526.7924942662654	57.099	0.65158	57.178	56.778	57.43	0.078674	-0.04713	-3.7665E-05	NaN	16.149	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1768600	+		10143	20531	5710	5710							0.0465093096563578
FVLHQKLPV	9	Unmodified	_FVLHQKLPV_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8324584960938	2	540.831852	1079.64915	0.54433	0.00029439	-0.45969	-0.00024862	0.084642	4.5777E-05	540.8325368674184	68.612	2.737	68.612	68.226	70.963	0					296	99	6	0	0	0	0.20344	2	17371	17371;17411		23.148	2.6948	1	81383000			10144	5811	5711	5711	13148;13149	13148					0.11251202990592901
FVLHQKLPV	9	Unmodified	_FVLHQKLPV_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.83251953125	2	540.831852	1079.64915	0.46712	0.00025263	-0.49331	-0.0002668	-0.026195	-1.4167E-05	540.8325338539388	68.534	2.4612	68.606	68.24	70.701	0.071938					290	88	6	0	0	0	0.20344	2	17338	17338;17383		23.148	1.6114	1	80195000			10145	5811	5711	5711	13150;13151	13150					0.11251202990592901
FVLHQKLPV	9	Unmodified	_FVLHQKLPV_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8323364257812	2	540.831852	1079.64915	0.60207	0.00032562	-0.60015	-0.00032458	0.0019264	1.0419E-06	540.8324534392195	68.627	2.7535	68.608	68.223	70.976	-0.01915					310	98	6	0	0	0	0.20344	2	17363	17363;17405		23.148	1.6114	1	81405000			10146	5811	5711	5711	13152;13153	13152					0.11251202990592901
FVLKQIKVL	9	Unmodified	_FVLKQIKVL_					0	0	0			REV__ENST00000567273.1_1_X:37798839-37798923:+|nuORF	REV__ENST00000567273.1_1_X:37798839-37798923:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.3657836914062	2	544.365527	1086.7165	0.51018	0.00027772	0.25541	0.00013904	0.76559	0.00041676	544.3654951210709	49.702	0.75466	49.702	49.462	50.217	0					63	27	4	0	0	0	0.27532	1	11464	11464		12.532	2.4576	1	912980	+		10147	22379	5712	5712	13154	13154					0.1766123320155657
FVLKQIKVL	9	Unmodified	_FVLKQIKVL_					0	0	0			REV__ENST00000567273.1_1_X:37798839-37798923:+|nuORF	REV__ENST00000567273.1_1_X:37798839-37798923:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	544.365527	1086.7165	0.51018	0.00027772	0.25541	0.00013904	0.76559	0.00041676	544.3654951210709	49.702	0.75466	49.702	49.462	50.217	0	-0.038132	0.00016365	NaN	12.532	63	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	912980	+		10148	22379	5712	5712							0.1766123320155657
FVLKQIKVL	9	Unmodified	_FVLKQIKVL_					0	0	0			REV__ENST00000567273.1_1_X:37798839-37798923:+|nuORF	REV__ENST00000567273.1_1_X:37798839-37798923:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.365527	1086.7165	0.59578	0.00032432	-0.014379	-7.8276E-06	0.5814	0.00031649	544.365345471132	49.746	0.59568	49.79	49.54	50.136	0.044891	0.049906	-0.00013008	NaN	12.532	54	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	987530	+		10149	22379	5712	5712							0.1766123320155657
FVLKQIKVL	9	Unmodified	_FVLKQIKVL_					0	0	0			REV__ENST00000567273.1_1_X:37798839-37798923:+|nuORF	REV__ENST00000567273.1_1_X:37798839-37798923:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	544.365527	1086.7165	0.58999	0.00032117	0.048763	2.6545E-05	0.63876	0.00034772	544.3653641168535	49.708	0.61212	49.729	49.483	50.095	0.020691	-0.011774	-6.1334E-05	NaN	12.532	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	851270	+		10150	22379	5712	5712							0.1766123320155657
FVLNDLRF	8	Unmodified	_FVLNDLRF_					0	0	0			REV__nc|ENSG00000111271|Q6JQN1-3|ACAD10	REV__nc|ENSG00000111271|Q6JQN1-3|ACAD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2493896484375	2	512.284734	1022.55492	0.22323	0.00011436	-3.8833	-0.0019893	-3.66	-0.001875	512.2839508727784	80.056	0.10239	80.118	80.079	80.181	0.061417					5	3	2	0	0	0	0.34092	1	20791	20791		13.508	0	1	45093	+		10151	14714	5713	5713	13155	13155					0.044540641684761795
FVLPHCLSFL	10	Unmodified	_FVLPHCLSFL_					0	0	0		ENST00000256682.8_1_12:49330571-49330871:-|nuORF	ENST00000256682.8_1_12:49330571-49330871:-|nuORF	ENST00000256682.8_1_12:49330571-49330871:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.3180541992188	2	588.31772	1174.62089	0.34387	0.0002023	-0.078965	-4.6457E-05	0.2649	0.00015585	588.3176703353704	21.894	1.278	21.794	21.471	22.749	-0.10034					129	46	4	0	0	0	0.38233	1	3116	3116		6.7232	0	1	2667600			10152	8931	5714	5714	13156	13156					0.04056137019006201
FVLQGYCFFI	10	Unmodified	_FVLQGYCFFI_					0	0	0			REV__ENSG00000163914|ENST00000296271|RHO	REV__ENSG00000163914|ENST00000296271|RHO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.8859252929688	2	618.809728	1235.6049	0.13264	8.2082E-05	1.2956	0.00080176	1.4283	0.00088384	618.8102564018672	25.377	0.23687	25.377	25.296	25.533	0					11	7	2	0	0	0	0.32132	1	4049	4049		1.4819	0	1	44589	+		10153	17104	5715	5715	13157	13157					-0.003475692178881218
FVLQGYCFFI	10	Unmodified	_FVLQGYCFFI_					0	0	0			REV__ENSG00000163914|ENST00000296271|RHO	REV__ENSG00000163914|ENST00000296271|RHO	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	618.809728	1235.6049	-0.15167	-9.3853E-05	1.917	0.0011863	1.7653	0.0010924	618.8110111777314	25.444	0.25045	25.413	25.265	25.515	-0.031408	0.018066	0.00055429	NaN	1.4819	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51929	+		10154	17104	5715	5715							-0.003475692178881218
FVLQNKIIL	9	Unmodified	_FVLQNKIIL_					0	0	0			REV__nc|ENSG00000205726|Q15811-9|ITSN1	REV__nc|ENSG00000205726|Q15811-9|ITSN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2191162109375	2	544.347335	1086.68012	0.53231	0.00028976	0.11514	6.2678E-05	0.64745	0.00035244	544.3473202976128	71.767	0.43687	71.767	71.639	72.076	0					25	15	2	0	0	0	0.21905	1	18330	18330		23.148	2.6948	1	165410	+	+	10155	23174	5716	5716	13158	13158					0.1402435630486707
FVLQNKIIL	9	Unmodified	_FVLQNKIIL_					0	0	0			REV__nc|ENSG00000205726|Q15811-9|ITSN1	REV__nc|ENSG00000205726|Q15811-9|ITSN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	544.347335	1086.68012	0.68953	0.00037534	-0.17516	-9.5347E-05	0.51437	0.00028	544.3472472862074	71.807	0.46523	71.78	71.602	72.068	-0.027275	-0.0019741	-0.00019509	NaN	23.148	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180660	+	+	10156	23174	5716	5716							0.1402435630486707
FVLSDLCLF	9	Unmodified	_FVLSDLCLF_					0	0	0		nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;ENST00000510738.2_1_12:19413894-19459437:+|nuORF	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8138427734375	2	528.775354	1055.53615	0.52751	0.00027893	3.5056	0.0018537	4.0331	0.0021326	528.7756838770233	70.45	0.38244	70.45	70.157	70.54	0					19	13	2	0	0	0	0.25202	1	17870	17870		6.7232	0	1	126570			10157	671	5717	5717	13159	13159					0.01060766482373765
FVLSPYYTF	9	Unmodified	_FVLSPYYTF_					0	0	0			REV__nc|ENSG00000114439|Q8WY36-3|BBX	REV__nc|ENSG00000114439|Q8WY36-3|BBX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.259765625	2	568.786776	1135.559	0.49732	0.00028287	-0.98735	-0.00056159	-0.49003	-0.00027872	568.7856736058097	67.575	0.86472	67.653	67.382	68.246	0.078041					42	30	2	0	0	0	0.24311	1	17136	17136		16.942	2.3606	1	213110	+		10158	22953	5718	5718	13160	13160					-0.0033589112849767844
FVLSPYYTF	9	Unmodified	_FVLSPYYTF_					0	0	0			REV__nc|ENSG00000114439|Q8WY36-3|BBX	REV__nc|ENSG00000114439|Q8WY36-3|BBX	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	568.786776	1135.559	0.193	0.00010977	-0.041726	-2.3733E-05	0.15127	8.604E-05	568.7859845458846	67.753	0.57278	67.737	67.393	67.966	-0.016296	0.041707	0.00072466	NaN	16.942	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245320	+		10159	22953	5718	5718							-0.0033589112849767844
FVLWGCLHV	9	Unmodified	_FVLWGCLHV_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.3212890625	2	537.28368	1072.55281	0.29226	0.00015703	-1.0316	-0.00055426	-0.73934	-0.00039724	537.2830365949097	34.17	0.69415	34.237	33.939	34.633	0.0667					40	24	3	0	0	0	0.24542	1	6797	6797		14.582	3.4672	1	310580			10160	555	5719	5719	13161	13161					0.019433121590054725
FVLWGCLHV	9	Unmodified	_FVLWGCLHV_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	537.28368	1072.55281	0.11559	6.2105E-05	-0.34742	-0.00018666	-0.23183	-0.00012456	537.2833226019684	34.369	0.48479	34.369	34.104	34.588	0	0.083705	0.00028775	NaN	14.582	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320190			10161	555	5719	5719							0.019433121590054725
FVLYFVMDL	9	Unmodified	_FVLYFVMDL_					0	0	0		ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	ENST00000488743.6_1_2:27425876-27434347:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.7993774414062	2	573.798829	1145.5831	0.078534	4.5063E-05	1.6161	0.00092732	1.6946	0.00097238	573.7996439197335	64.951	1.4256	64.951	64.673	66.099	0					100	51	3	0	0	0	0.1659	1	16203	16203		28.487	0	1	5948800			10162	4112	5720	5720	13162	13162					0.01613626033554283
FVMRCNLP	8	Unmodified	_FVMRCNLP_					0	0	0		ENST00000545524.5_1_12:22303134-22408308:-|nuORF;ENSG00000111728|ENST00000396037|ST8SIA1	ENST00000545524.5_1_12:22303134-22408308:-|nuORF	ENST00000545524.5_1_12:22303134-22408308:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.9122619628906	2	490.24624	978.477928	0.11917	5.8421E-05	-0.36325	-0.00017808	-0.24409	-0.00011966	490.24604145023557	40.904	0.64885	41.001	40.639	41.288	0.096981					40	23	2	0	0	0	0.34337	1	8666	8666		5.2307	5.2307	1	643940			10163	2387	5721	5721	13163	13163					-0.012171936438789999
FVMRCNLP	8	Unmodified	_FVMRCNLP_					0	0	0		ENST00000545524.5_1_12:22303134-22408308:-|nuORF;ENSG00000111728|ENST00000396037|ST8SIA1	ENST00000545524.5_1_12:22303134-22408308:-|nuORF	ENST00000545524.5_1_12:22303134-22408308:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	490.24624	978.477928	0.1289	6.3191E-05	-0.81592	-0.0004	-0.68702	-0.00033681	490.2457483180729	41.172	0.51114	41.172	40.96	41.471	0	0.098204	-0.00026334	NaN	5.2307	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	713650			10164	2387	5721	5721							-0.012171936438789999
FVMRCNLP	8	Unmodified	_FVMRCNLP_					0	0	0		ENST00000545524.5_1_12:22303134-22408308:-|nuORF;ENSG00000111728|ENST00000396037|ST8SIA1	ENST00000545524.5_1_12:22303134-22408308:-|nuORF	ENST00000545524.5_1_12:22303134-22408308:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	490.24624	978.477928	0.34574	0.0001695	-0.57297	-0.0002809	-0.22723	-0.0001114	490.24591442359207	40.958	0.60714	41.048	40.743	41.35	0.090252	-0.025616	-2.5131E-05	NaN	5.2307	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	743450			10165	2387	5721	5721							-0.012171936438789999
FVNINQKLL	9	Unmodified	_FVNINQKLL_					0	0	0			REV__ENST00000457997.1_1_13:19435671-19446003:-|nuORF	REV__ENST00000457997.1_1_13:19435671-19446003:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.8109130859375	2	544.826766	1087.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.119	1	73.173	72.673	73.673	0.053833								0	0	0	0.19804	1	18664	18664		23.148	0	1		+		10166	21184	5722	5722	13164	13164					0.09866595265384603
FVNKSKLDRHL	11	Unmodified	_FVNKSKLDRHL_					0	0	0			REV__nc|ENSG00000114670|Q8NG66-2|NEK11	REV__nc|ENSG00000114670|Q8NG66-2|NEK11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7764587402344	3	452.929733	1355.76737	-0.64638	-0.00029276	-0.83555	-0.00037844	-1.4819	-0.00067121	452.92936380935424	34.769	0.55848	34.847	34.474	35.033	0.077377					30	19	2	0	0	0	0.33274	1	6845	6845		1.9275	0.71267	1	102570	+		10167	14842	5723	5723	13165	13165					0.1037153050847337
FVNRYVTYF	9	Unmodified	_FVNRYVTYF_					0	0	0			REV__ENSG00000168724|ENST00000648817|DNAJC21	REV__ENSG00000168724|ENST00000648817|DNAJC21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.560791015625	3	403.541475	1207.60259	-0.25759	-0.00010395	2.9795	0.0012023	2.7219	0.0010984	403.5435897897503	23.814	0.20301	23.742	23.588	23.791	-0.072559					9	6	2	0	0	0	0.26169	1	3542	3542		2.2828	0.19677	1	22124	+		10168	17475	5724	5724	13166	13166					0.007097183686710196
FVPEITGKGF	10	Unmodified	_FVPEITGKGF_					0	0	0			REV__nc|ENSG00000175066|Q6ZS86-2|GK5	REV__nc|ENSG00000175066|Q6ZS86-2|GK5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3135375976562	2	547.797675	1093.5808	0.38518	0.000211	-1.594	-0.00087317	-1.2088	-0.00066217	548.2969968474522	70.098	0.57053	70.098	69.703	70.273	0					32	20	2	0	0	0	0.30958	1	17801	17801		19.257	0	1	116340	+		10169	23092	5725	5725	13167	13167					0.03774913620100051
FVPFRQFQ	8	Unmodified	_FVPFRQFQ_					0	0	0		ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.232177734375	2	534.784902	1067.55525	0.67994	0.00036362	-1.345	-0.00071927	-0.66503	-0.00035565	535.2859795273298	86.01	0.27011	86.01	85.905	86.175	0					13	9	2	0	0	0	0.34319	1	22640	22640		5.7604	0.52976	1	124590			10170	1261	5726	5726	13168	13168					0.02417483888325478
FVPHNDNE	8	Unmodified	_FVPHNDNE_					0	0	0			REV__nc|ENSG00000134762|Q14574-2|DSC3	REV__nc|ENSG00000134762|Q14574-2|DSC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7850036621094	2	486.214506	970.414459	-0.010049	-4.8862E-06	0.67655	0.00032895	0.66651	0.00032406	486.2149667372146	14.784	0.3687	14.677	14.452	14.82	-0.10693					20	12	2	0	0	0	0.3439	1	832	832		2.8892	0	1	44472	+		10171	15699	5727	5727	13169	13169					-0.07193139555761263
FVPHYRKL	8	Unmodified	_FVPHYRKL_					0	0	0			REV__Harlequin-int_dup274|chr7:135172831-135173811:+|1.6690129096142616|0.3270592348791503|2.35|542.0|40|3|sense	REV__Harlequin-int_dup274|chr7:135172831-135173811:+|1.6690129096142616|0.3270592348791503|2.35|542.0|40|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.295654296875	2	530.308544	1058.60253	0.39183	0.00020779	0.40006	0.00021216	0.79189	0.00041995	530.3093224028644	59.135	0.18534	59.226	59.077	59.262	0.091301					10	6	2	0	0	0	0.42446	1	14373	14373		14.582	4.3983	1	121400	+		10172	22695	5728	5728	13170	13170					0.0755776315932053
FVPHYRKL	8	Unmodified	_FVPHYRKL_					0	0	0			REV__Harlequin-int_dup274|chr7:135172831-135173811:+|1.6690129096142616|0.3270592348791503|2.35|542.0|40|3|sense	REV__Harlequin-int_dup274|chr7:135172831-135173811:+|1.6690129096142616|0.3270592348791503|2.35|542.0|40|3|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	530.308544	1058.60253	0.42951	0.00022777	-5.3025	-0.002812	-4.873	-0.0025842	530.3062197194029	59.189	0.13403	59.189	59.133	59.267	0	-0.018388	-0.00078035	NaN	14.582	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76256	+		10173	22695	5728	5728							0.0755776315932053
FVPHYRKL	8	Unmodified	_FVPHYRKL_					0	0	0			REV__Harlequin-int_dup274|chr7:135172831-135173811:+|1.6690129096142616|0.3270592348791503|2.35|542.0|40|3|sense	REV__Harlequin-int_dup274|chr7:135172831-135173811:+|1.6690129096142616|0.3270592348791503|2.35|542.0|40|3|sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	530.308544	1058.60253	0.39183	0.00020779	0.40006	0.00021216	0.79189	0.00041995	530.3093224028644	59.135	0.18534	59.226	59.077	59.262	0.091301	0.018388	0.0052679	NaN	14.582	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121400	+		10174	22695	5728	5728							0.0755776315932053
FVPNSLLHK	9	Unmodified	_FVPNSLLHK_					0	0	0			REV__nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	REV__nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2905883789062	2	527.805834	1053.59712	0.76709	0.00040487	-0.76841	-0.00040557	-0.0013238	-6.987E-07	527.8055167859766	47.836	0.24971	47.836	47.658	47.908	0					12	8	2	0	0	0	0.23783	1	10898	10898		7.9102	0	1	570270	+		10175	17940	5729	5729	13171	13171					0.07246039576853036
FVPPSRAIAH	10	Unmodified	_FVPPSRAIAH_					0	0	0		nc|ENSG00000112874|Q9BQG2-2|NUDT12;ENSG00000112874|ENST00000230792|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.8096923828125	2	547.808908	1093.60326	1.0008	0.00054824	-0.13948	-7.6408E-05	0.8613	0.00047183	547.8087452646537	33.852	0.94371	33.919	33.624	34.567	0.06636					101	33	4	0	0	0	0.22916	1	6572	6572		29.082	4.0906	1	1349500			10176	2465	5730	5730	13172	13172					0.06020557808369631
FVPQVRTLT	9	Unmodified	_FVPQVRTLT_					0	0	0			REV__ENSG00000196476|ENST00000360321|C20orf96	REV__ENSG00000196476|ENST00000360321|C20orf96	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.332275390625	2	530.811116	1059.60768	0.7102	0.00037698	2.4606	0.0013061	3.1708	0.0016831	530.8125828595078	66.089	0.68459	66.089	65.768	66.453	0					31	24	2	0	0	0	0.25066	1	16519	16519		7.2892	2.0586	1	195030	+		10177	18656	5731	5731	13173	13173					0.08026022231297247
FVPSFTNYV	9	Unmodified	_FVPSFTNYV_					0	0	0			REV__ENST00000585682.5_1_4:159047074-159047500:-|nuORF	REV__ENST00000585682.5_1_4:159047074-159047500:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2871704101562	2	537.26875	1072.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.314	1	87.314	86.814	87.814	0								0	0	0	0.19013	1	23018	23018		25.399	4.9457	1		+		10178	22513	5732	5732	13174	13174					-0.010413483053525852
FVPSFTNYV	9	Unmodified	_FVPSFTNYV_					0	0	0			REV__ENST00000585682.5_1_4:159047074-159047500:-|nuORF	REV__ENST00000585682.5_1_4:159047074-159047500:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.26708984375	2	537.26875	1072.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.758	1	86.845	86.345	87.345	0.08709								0	0	0	0.22933	1	22840	22840		13.042	0.51092	1		+		10179	22513	5732	5732	13175	13175					-0.010413483053525852
FVPYSEKLLK	10	Unmodified	_FVPYSEKLLK_					0	0	0			REV__ENST00000442902.1_1_20:50727220-50727574:-|nuORF	REV__ENST00000442902.1_1_20:50727220-50727574:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.3560791015625	2	612.355357	1222.69616	0.37383	0.00022892	0.42175	0.00025826	0.79558	0.00048718	612.3556547524186	82.634	0.4474	82.613	82.346	82.793	-0.020584					41	17	3	0	0	0	0.39745	1	21609	21609		3.9444	0.3479	1	415450	+		10180	21059	5733	5733	13176	13176					0.09372017751093153
FVQALLSGLF	10	Unmodified	_FVQALLSGLF_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.81591796875	2	547.815867	1093.61718	0.41859	0.00022931	-0.20079	-0.00011	0.2178	0.00011932	547.8157207513062	76.02	0.91681	76.074	75.702	76.619	0.053421					58	32	3	0	0	0	0.33817	1	19527	19527		14.838	2.5976	1	618680			10181	7934	5734	5734	13177	13177					0.07411790516812289
FVQFLWIKF	9	Unmodified	_FVQFLWIKF_					0	0	0		ENST00000510955.5_1_4:178358517-178361430:-|nuORF	ENST00000510955.5_1_4:178358517-178361430:-|nuORF	ENST00000510955.5_1_4:178358517-178361430:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.55230712890625	3	409.902344	1226.6852	0.24103	9.8799E-05	-0.91421	-0.00037473	-0.67317	-0.00027594	410.23685100410324	44.711	0.38321	44.786	44.475	44.859	0.07505					16	13	2	0	0	0	0.25612	1	9865	9865		2.4985	0	1	230890			10182	11377	5735	5735	13178	13178					0.0809266016744914
FVQKGLYLAIN	11	Unmodified	_FVQKGLYLAIN_					0	0	0			REV__ENSG00000174898|ENST00000381624|CATSPERD	REV__ENSG00000174898|ENST00000381624|CATSPERD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3682861328125	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.573	1	96.573	96.073	97.073	0								0	0	0	0.37501	1	25806	25806		2.7352	0.45242	1		+		10183	17859	5736	5736	13179	13179					0.09618822499669477
FVQKQTLKA	9	Unmodified	_FVQKQTLKA_					0	0	0		ENSG00000178175|ENST00000318442|ZNF366	ENSG00000178175|ENST00000318442|ZNF366	ENSG00000178175|ENST00000318442|ZNF366	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3198852539062	2	531.818941	1061.62333	0.18153	9.6541E-05	0.74393	0.00039563	0.92546	0.00049218	532.3218528909523	97.515	0.37672	97.515	97.2	97.577	0					49	37	2	0	0	0	0.25202	1	26030	26030		6.7232	0	1	77988			10184	7041	5737	5737	13180	13180					0.09498308748334239
FVQLRGLPF	9	Unmodified	_FVQLRGLPF_					0	0	0		ENST00000515565.1_1_5:55135402-55135780:-|nuORF	ENST00000515565.1_1_5:55135402-55135780:-|nuORF	ENST00000515565.1_1_5:55135402-55135780:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2951049804688	2	538.816202	1075.61785	0.54742	0.00029496	1.9502	0.0010508	2.4977	0.0013458	539.3184029216188	62.46	0.66675	62.46	62.022	62.689	0					33	24	2	0	0	0	0.23147	1	15469	15469		13.508	0	1	155110			10185	11427	5738	5738	13181	13181					0.08306629956518918
FVQPKEVF	8	Unmodified	_FVQPKEVF_					0	0	0			REV__ENSG00000173540|ENST00000308388|GMPPB	REV__ENSG00000173540|ENST00000308388|GMPPB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2734680175781	2	497.273835	992.533118	0.39981	0.00019882	-0.45035	-0.00022395	-0.050534	-2.5129E-05	497.27320093940983	79.847	1.248	79.847	79.164	80.412	0					85	47	3	0	0	0	0.16948	1	20710	20710		48.346	4.4876	1	313760	+		10186	17786	5739	5739	13182	13182					0.036552594199065425
FVQVNYLIV	9	Unmodified	_FVQVNYLIV_					0	0	0			REV__nc|ENSG00000144857|Q9BWV1|BOC	REV__nc|ENSG00000144857|Q9BWV1|BOC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7980346679688	2	547.815867	1093.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.804	1	76.857	76.357	77.357	0.053413								0	0	0	0.24311	1	19787	19787		8.5933	0.68312	1		+		10187	16268	5740	5740	13183	13183					0.07411790516812289
FVREGGQH	8	Unmodified	_FVREGGQH_					0	0	0			REV__nc|ENSG00000249948|Q9H227-2|GBA3	REV__nc|ENSG00000249948|Q9H227-2|GBA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.23260498046875	2	465.233033	928.451513	0.089959	4.1852E-05	0.3327	0.00015478	0.42265	0.00019663	465.2330165501188	17.699	1.0125	17.638	17.358	18.37	-0.060429					91	35	4	0	0	0	0.44389	1	1669	1669		7.9102	0	1	976400	+		10188	23216	5741	5741	13184	13184					-0.01557423219321663
FVRGLRYF	8	Unmodified	_FVRGLRYF_					0	0	0			REV__ENST00000461819.5_1_1:32670894-32670972:+|nuORF	REV__ENST00000461819.5_1_1:32670894-32670972:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.8399658203125	2	529.300719	1056.58688	0.51245	0.00027124	-2.0055	-0.0010615	-1.4931	-0.00079028	529.8007466819383	67.796	0.18622	67.796	67.623	67.809	0					8	6	2	0	0	0	0.34046	1	17032	17032		14.582	5.9884	1	58732	+		10189	21226	5742	5742	13185	13185					0.06085476642260801
FVRLRNYFKK	10	Unmodified	_FVRLRNYFKK_					0	0	0		ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.59185791015625	3	457.606701	1369.79827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.224	1	24.151	23.651	24.651	-0.072559								0	0	0	0.38104	1	3688	3688		1.7423	0	1				10190	2801	5743	5743	13186	13186					0.1281672861334755
FVRMSQLTLQK	11	Unmodified	_FVRMSQLTLQK_					0	0	0			REV__nc|ENSG00000135111|O15119-3|TBX3	REV__nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.2480773925781	3	450.92359	1349.74894	0.20816	9.3864E-05	-0.70104	-0.00031611	-0.49288	-0.00022225	450.9233223394209	28.863	1.1026	28.863	28.389	29.492	0					80	39	4	0	0	0	0.36722	1	5040	5040		15.538	1.3203	1	287150	+		10191	15723	5744	5744	13187	13187					0.0880565254224166
FVRMSQLTLQK	11	Unmodified	_FVRMSQLTLQK_					0	0	0			REV__nc|ENSG00000135111|O15119-3|TBX3	REV__nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.91387939453125	3	450.92359	1349.74894	0.12237	5.518E-05	-0.41491	-0.00018709	-0.29254	-0.00013191	450.92346673590197	28.773	0.81813	28.769	28.438	29.256	-0.0042572					73	28	4	0	0	0	0.36722	1	5100	5100		15.538	1.3203	1	310890	+		10192	15723	5744	5744	13188	13188					0.0880565254224166
FVRNRYTHVK	10	Unmodified	_FVRNRYTHVK_					0	0	0		ENSG00000176928|ENST00000652361|GCNT4	ENSG00000176928|ENST00000652361|GCNT4	ENSG00000176928|ENST00000652361|GCNT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2637023925781	3	440.582556	1318.72584	-0.07991	-3.5207E-05	-0.73393	-0.00032336	-0.81384	-0.00035856	440.5821057029392	19.189	0.98151	19.189	18.923	19.905	0					92	34	4	0	0	0	0.40085	1	2266	2266		3.3196	0.47636	1	663340			10193	6951	5745	5745	13189	13189					0.07922394539787092
FVRYEKLRK	9	Unmodified	_FVRYEKLRK_					0	0	0			REV__ENST00000424459.7_2_5:56471743-56471803:+|nuORF	REV__ENST00000424459.7_2_5:56471743-56471803:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8115234375	2	619.87204	1237.72953	-0.42314	-0.00026229	-0.014682	-9.1009E-06	-0.43782	-0.00027139	619.8720341511403	35.224	0.45779	35.224	35.062	35.52	0					27	16	2	0	0	0	0.26031	1	6988	6988		3.5965	3.5965	1	234170	+		10194	20891	5746	5746	13190	13190					0.12017064313636183
FVRYVNTY	8	Unmodified	_FVRYVNTY_					0	0	0			REV__ENSG00000255151|ENST00000527482|GLYATL1B	REV__ENSG00000255151|ENST00000527482|GLYATL1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.742919921875	2	531.274367	1060.53418	0.064699	3.4373E-05	-0.8316	-0.00044181	-0.7669	-0.00040743	531.2739659002342	12.859	0.30989	12.76	12.643	12.953	-0.09929					16	10	2	0	0	0	0.34414	1	262	262		2.0598	0.21551	1	45322	+		10195	19240	5747	5747	13191	13191					0.006334737888209929
FVSAGIQTSF	10	Unmodified	_FVSAGIQTSF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3082275390625	2	528.771657	1055.52876	0.55997	0.0002961	-1.6018	-0.00084701	-1.0419	-0.00055091	528.7705856148837	62.664	0.53318	62.664	62.45	62.984	0					32	19	2	0	0	0	0.24359	1	15511	15511		31.268	6.5945	1	392170			10196	2205	5748	5748	13192	13192					0.00321750206330762
FVSAGIQTSF	10	Unmodified	_FVSAGIQTSF_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.77099609375	2	528.771657	1055.52876	0.50181	0.00026535	-0.95332	-0.00050409	-0.4515	-0.00023874	528.7713488901195	62.588	0.46455	62.685	62.442	62.906	0.096985					26	16	2	0	0	0	0.18128	1	15460	15460		34.932	8.0484	1	370440			10197	2205	5748	5748	13193	13193					0.00321750206330762
FVSDCNMMF	9	Unmodified	_FVSDCNMMF_					0	0	0			REV__ENST00000283131.3_1_4:144469210-144471177:+|nuORF	REV__ENST00000283131.3_1_4:144469210-144471177:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.2119750976562	2	547.211206	1092.40786	0.40956	0.00022412	0.65118	0.00035633	1.0607	0.00058045	547.211516089155	81.466	0.56356	81.466	81.256	81.82	0					62	24	4	0	0	0	0.32415	1	21286	21286		5.2307	2.9279	1	438130	+		10198	19722	5749	5749	13194	13194					-0.13464860094632058
FVSDCNMMF	9	Unmodified	_FVSDCNMMF_					0	0	0			REV__ENST00000283131.3_1_4:144469210-144471177:+|nuORF	REV__ENST00000283131.3_1_4:144469210-144471177:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.2118530273438	2	547.211206	1092.40786	0.53976	0.00029536	0.68425	0.00037443	1.224	0.00066979	547.2115424199226	81.508	0.58382	81.484	81.294	81.878	-0.02404					63	25	3	0	0	0	0.32415	1	21257	21257		5.2307	2.6532	1	475030	+		10199	19722	5749	5749	13195	13195					-0.13464860094632058
FVSDCNMMF	9	Unmodified	_FVSDCNMMF_					0	0	0			REV__ENST00000283131.3_1_4:144469210-144471177:+|nuORF	REV__ENST00000283131.3_1_4:144469210-144471177:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	547.211206	1092.40786	0.40956	0.00022412	0.65118	0.00035633	1.0607	0.00058045	547.211516089155	81.466	0.56356	81.466	81.256	81.82	0	-0.018776	-8.1212E-05	NaN	5.2307	62	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438130	+		10200	19722	5749	5749							-0.13464860094632058
FVSDCNMMF	9	Unmodified	_FVSDCNMMF_					0	0	0			REV__ENST00000283131.3_1_4:144469210-144471177:+|nuORF	REV__ENST00000283131.3_1_4:144469210-144471177:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	547.211206	1092.40786	0.23755	0.00012999	0.87694	0.00047987	1.1145	0.00060986	547.211600034326	81.435	0.53247	81.504	81.247	81.779	0.068993	0.019459	0.00016587	NaN	5.2307	72	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	506300	+		10201	19722	5749	5749							-0.13464860094632058
FVSDCNMMF	9	Unmodified	_FVSDCNMMF_					0	0	0			REV__ENST00000283131.3_1_4:144469210-144471177:+|nuORF	REV__ENST00000283131.3_1_4:144469210-144471177:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	547.211206	1092.40786	0.53976	0.00029536	0.68425	0.00037443	1.224	0.00066979	547.2115424199226	81.508	0.58382	81.484	81.294	81.878	-0.02404	-0.00068348	-4.5022E-05	NaN	5.2307	63	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475030	+		10202	19722	5749	5749							-0.13464860094632058
FVSDKRSLL	9	Unmodified	_FVSDKRSLL_					0	0	0			REV__ENSG00000006071|ENST00000389817|ABCC8	REV__ENSG00000006071|ENST00000389817|ABCC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.29248046875	2	532.808574	1063.60259	0.44693	0.00023813	-0.15258	-8.1296E-05	0.29435	0.00015683	532.8082442684092	56.782	0.54664	56.861	56.603	57.149	0.078674					50	20	3	0	0	0	0.2322	1	13732	13732		14.838	0	1	1132700	+		10203	13352	5750	5750	13196	13196					0.07333718368658992
FVSDKRSLL	9	Unmodified	_FVSDKRSLL_					0	0	0			REV__ENSG00000006071|ENST00000389817|ABCC8	REV__ENSG00000006071|ENST00000389817|ABCC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.29248046875	2	532.808574	1063.60259	0.36874	0.00019647	3.0939	0.0016485	3.4627	0.0018449	532.8107800050764	57.282	0.49433	57.368	57.104	57.598	0.085621					38	17	3	0	0	0	0.2322	1	13732	13732		14.838	0	1	778930	+		10204	13352	5750	5750	13197	13197					0.07333718368658992
FVSFGAKKD	9	Unmodified	_FVSFGAKKD_					0	0	0			REV__nc|ENSG00000136010|Q3SY69-2|ALDH1L2	REV__nc|ENSG00000136010|Q3SY69-2|ALDH1L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2521057128906	2	499.768917	997.523281	0.46998	0.00023488	2.191	0.001095	2.661	0.0013299	499.77018427673084	86.153	0.29668	86.237	85.989	86.286	0.084251					15	10	2	0	0	0	0.2322	1	22634	22634		20.454	3.3671	1	97747	+		10205	15778	5751	5751	13198	13198					0.024420714145321654
FVSFGAKKD	9	Unmodified	_FVSFGAKKD_					0	0	0			REV__nc|ENSG00000136010|Q3SY69-2|ALDH1L2	REV__nc|ENSG00000136010|Q3SY69-2|ALDH1L2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	499.768917	997.523281	0.55894	0.00027934	1.5896	0.00079445	2.1486	0.0010738	499.769960241131	86.184	0.61008	86.184	85.819	86.429	0	-0.0028564	-0.00029693	NaN	20.454	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73743	+		10206	15778	5751	5751							0.024420714145321654
FVSFGAKKD	9	Unmodified	_FVSFGAKKD_					0	0	0			REV__nc|ENSG00000136010|Q3SY69-2|ALDH1L2	REV__nc|ENSG00000136010|Q3SY69-2|ALDH1L2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	499.768917	997.523281	0.51868	0.00025922	1.7044	0.0008518	2.2231	0.001111	499.76988554723283	86.148	0.46257	86.139	85.899	86.362	-0.0090027	-0.047715	-0.00018221	NaN	20.454	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151290	+		10207	15778	5751	5751							0.024420714145321654
FVSGKGGEFLK	11	Unmodified	_FVSGKGGEFLK_					0	0	0			REV__nc|ENSG00000138698|P52306-6|RAP1GDS1	REV__nc|ENSG00000138698|P52306-6|RAP1GDS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8222045898438	2	584.821681	1167.62881	0.35128	0.00020543	0.84446	0.00049386	1.1957	0.00069929	584.821988084842	43.872	0.39529	43.956	43.736	44.131	0.083992					35	14	3	0	0	0	0.069534	1	9654	9654		47.594	3.7361	1	659420	+		10208	15948	5752	5752	13199	13199					0.05169987540148213
FVSGKGGEFLK	11	Unmodified	_FVSGKGGEFLK_					0	0	0			REV__nc|ENSG00000138698|P52306-6|RAP1GDS1	REV__nc|ENSG00000138698|P52306-6|RAP1GDS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	584.821681	1167.62881	0.26272	0.00015364	0.91907	0.00053749	1.1818	0.00069114	584.8219225875889	43.835	0.41937	43.912	43.736	44.155	0.077515	-0.097271	0.00017163	NaN	47.594	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	670750	+		10209	15948	5752	5752							0.05169987540148213
FVSGKGGEFLK	11	Unmodified	_FVSGKGGEFLK_					0	0	0			REV__nc|ENSG00000138698|P52306-6|RAP1GDS1	REV__nc|ENSG00000138698|P52306-6|RAP1GDS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	584.821681	1167.62881	0.35128	0.00020543	0.84446	0.00049386	1.1957	0.00069929	584.821988084842	43.872	0.39529	43.956	43.736	44.131	0.083992	-0.053262	8.436E-05	NaN	47.594	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	659420	+		10210	15948	5752	5752							0.05169987540148213
FVSLLESIN	9	Unmodified	_FVSLLESIN_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2694396972656	2	511.281857	1020.54916	0.45406	0.00023215	2.2159	0.0011329	2.6699	0.0013651	511.2830548427735	45.138	0.36317	45.206	45.093	45.456	0.068569					20	12	2	0	0	0	0.019245	1	10049	10049		65.235	21.377	1	157850			10211	3900	5753	5753	13200	13200					0.03970920866140659
FVSLLESIN	9	Unmodified	_FVSLLESIN_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.26934814453125	2	511.281857	1020.54916	0.34582	0.00017681	2.8918	0.0014785	3.2376	0.0016553	511.2830905225809	45.161	0.31712	45.236	45.129	45.446	0.075047					19	11	3	0	0	0	0.041175	2	10041	10041;10091		56.177	14.082	1	152580			10212	3900	5753	5753	13201;13202	13201					0.03970920866140659
FVSRQPSL	8	Unmodified	_FVSRQPSL_					0	0	0			REV__MLT1O_dup3857|chr14:57487880-57488236:+|1.4060546316911124|0.4929356967488846|1.51|533.0|23|3|anti-sense	REV__MLT1O_dup3857|chr14:57487880-57488236:+|1.4060546316911124|0.4929356967488846|1.51|533.0|23|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7222900390625	2	467.261259	932.507966	-0.031345	-1.4646E-05	0.97446	0.00045533	0.94311	0.00044068	467.26119082418745	69.975	0.92497	70.041	69.459	70.384	0.066048					40	32	2	0	0	0	0.31088	1	17723	17723		15.847	3.3156	1	109050	+		10213	22867	5754	5754	13203	13203					0.03901204617341136
FVTIEASLKQK	11	Unmodified	_FVTIEASLKQK_					0	0	0		RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant;nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;RALGAPA1|p.E1734Rfs*4|1|0.27|ENSG00000174373|chr14:35627229-35627230|-/T|frameshift_variant;ENSG00000174373|ENST00000680220|RALGAPA1	RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant	RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5576477050781	3	421.915089	1262.72344	-0.37135	-0.00015668	2.7721	0.0011696	2.4008	0.0010129	422.2510748977162	13.773	0.10684	13.773	13.687	13.794	0					5	3	2	0	0	0	0.33316	1	514	514		2.084	0.62885	1	11575			10214	6790	5755	5755	13204	13204					0.1025850129144601
FVTIEASLKQK	11	Unmodified	_FVTIEASLKQK_					0	0	0		RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant;nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;RALGAPA1|p.E1734Rfs*4|1|0.27|ENSG00000174373|chr14:35627229-35627230|-/T|frameshift_variant;ENSG00000174373|ENST00000680220|RALGAPA1	RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant	RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5576477050781	3	421.915089	1262.72344	-0.31187	-0.00013158	0.86046	0.00036304	0.54859	0.00023146	421.91537692113604	14.074	0.38216	14.008	13.687	14.07	-0.066068					16	12	2	0	0	0	0.33316	1	543	543		2.084	0.75432	1	39511			10215	6790	5755	5755	13205	13205					0.1025850129144601
FVTKEGLASC	10	Unmodified	_FVTKEGLASC_					0	0	0			REV__ENSG00000188064|ENST00000339464|WNT7B	REV__ENSG00000188064|ENST00000339464|WNT7B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7838134765625	2	527.765517	1053.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.1	1	14.991	14.491	15.491	-0.10981								0	0	0	0.36581	1	927	927		8.1555	0	1		+		10216	18539	5756	5756	13206	13206					-0.008136095283589384
FVTKEQYF	8	Unmodified	_FVTKEQYF_					0	0	0			REV__ENST00000478143.2_1_6:37623406-37626141:-|nuORF	REV__ENST00000478143.2_1_6:37623406-37626141:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.817138671875	2	531.26875	1060.52295	0.47391	0.00025177	-1.16	-0.00061626	-0.68608	-0.00036449	531.2678801071817	80.854	0.52073	80.854	80.657	81.178	0					46	25	2	0	0	0	0.29634	1	21097	21097		26.884	2.8631	1	233360	+		10217	14755	5757	5757	13207	13207					-0.004893483053592718
FVTPPDYSF	9	Unmodified	_FVTPPDYSF_					0	0	0		ENST00000525460.5_1_1:108115955-108220600:-|nuORF;nc|ENSG00000134215|Q9UKW4-4|VAV3	ENST00000525460.5_1_1:108115955-108220600:-|nuORF	ENST00000525460.5_1_1:108115955-108220600:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.7728881835938	2	536.752933	1071.49131	0.44669	0.00023976	-0.81843	-0.00043929	-0.37174	-0.00019953	537.2534948872014	79.557	0.40982	79.619	79.418	79.828	0.061417					23	15	2	0	0	0	0.24311	1	20631	20631		16.942	3.0362	1	99719			10218	11539	5758	5758	13208	13208					-0.041573410592718574
FVTRRRLFL	9	Unmodified	_FVTRRRLFL_					0	0	0			REV__ENST00000533736.5_1_4:39640794-39640896:+|nuORF	REV__ENST00000533736.5_1_4:39640794-39640896:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.56494140625	3	403.252258	1206.73495	-0.95692	-0.00038588	2.5809	0.0010407	1.624	0.00065487	403.25364264099414	34.696	0.75015	34.773	34.474	35.224	0.077377					38	26	2	0	0	0	0.24787	1	6861	6861		10.8	3.3224	1	1057200	+		10219	22047	5759	5759	13209	13209					0.13984787896129092
FVTVQGRAIC	10	Unmodified	_FVTVQGRAIC_					0	0	0		ENSG00000102970|ENST00000219244|CCL17	ENSG00000102970|ENST00000219244|CCL17	ENSG00000102970|ENST00000219244|CCL17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.8155517578125	2	547.294776	1092.575	0.5822	0.00031863	1.9234	0.0010527	2.5056	0.0013713	547.7970227844384	63.815	0.69042	63.815	63.389	64.079	0					35	24	2	0	0	0	0.30586	1	15823	15823		19.257	19.257	1	215330			10220	1796	5760	5760	13210	13210					0.032414918367749124
FVVCMALL	8	Unmodified	_FVVCMALL_					0	0	0		nc|ENSG00000166736|P46098-3|HTR3A;ENSG00000166736|ENST00000504030|HTR3A;nc|ENSG00000166736|P46098-4|HTR3A;nc|ENSG00000166736|P46098-2|HTR3A;nc|ENSG00000166736|P46098-5|HTR3A	nc|ENSG00000166736|P46098-3|HTR3A	nc|ENSG00000166736|P46098-3|HTR3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.254150390625	2	448.242635	894.470717	-0.018224	-8.1689E-06	-1.1574	-0.00051878	-1.1756	-0.00052695	448.2421407739262	76.464	0.60139	76.517	76.289	76.89	0.053421					39	21	2	0	0	0	0.31651	1	19620	19620		11.114	0	1	266550			10221	6106	5761	5761	13211	13211					0.01926073755703328
FVVDRGHDR	9	Unmodified	_FVVDRGHDR_					0	0	0		ENST00000467548.1_1_2:220107868-220108295:-|nuORF;nc|ENSG00000163521|Q6UWU2-2|GLB1L;ENSG00000163521|ENST00000295759|GLB1L	ENST00000467548.1_1_2:220107868-220108295:-|nuORF	ENST00000467548.1_1_2:220107868-220108295:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.783935546875	2	550.783422	1099.55229	0.31358	0.00017271	0.21377	0.00011774	0.52735	0.00029045	550.7835343689134	19.904	0.66123	19.904	19.574	20.235	0					63	24	4	0	0	0	0.31763	1	2462	2462		6.2058	0.97511	1	587110			10222	5695	5762	5762	13212	13212					0.006496087635014192
FVVFIHAYQVK	11	Unmodified	_FVVFIHAYQVK_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.9138488769531	3	450.923807	1349.74959	0.12237	5.518E-05	-0.89683	-0.0004044	-0.77446	-0.00034922	450.92346673590197	28.773	0.81813	28.769	28.438	29.256	-0.0042572					73	28	4	0	0	0	0.40701	1	5144	5144		10.315	1.0715	1	310890			10223	5811	5763	5763	13213	13213					0.08870815253590081
FVVFLFRR	8	Unmodified	_FVVFLFRR_					0	0	0			REV__ENSG00000081800|ENST00000194130|SLC13A1	REV__ENSG00000081800|ENST00000194130|SLC13A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7638549804688	2	542.326737	1082.63892	0.43818	0.00023763	0.75717	0.00041063	1.1953	0.00064827	542.3270621790334	17.044	0.2543	17.044	16.867	17.122	0					13	8	2	0	0	0	0.34434	1	1529	1529		0.79363	0.10326	1	21952	+		10224	13907	5764	5764	13214	13214					0.10090640056023403
FVVGNVLFIFI	11	Unmodified	_FVVGNVLFIFI_					0	0	0			REV__ENST00000540112.1_3_11:60703176-60704376:+|nuORF	REV__ENST00000540112.1_3_11:60703176-60704376:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3782348632812	2	634.376092	1266.73763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.38	1	113.36	112.86	113.86	-0.017303								0	0	0	0.38126	1	29474	29474		1.1933	0.735	1		+		10225	13354	5765	5765	13215	13215					0.1149319851040218
FVVHWLNNKEL	11	Unmodified	_FVVHWLNNKEL_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1;ENST00000504031.1_1_5:118464934-118469134:+|nuORF	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7558288574219	3	466.922467	1397.74557	0.031643	1.4775E-05	-1.564	-0.00073025	-1.5323	-0.00071548	467.2566085536916	22.632	0.76703	22.588	22.266	23.033	-0.044867					50	26	3	0	0	0	0.33303	1	3240	3240		2.4348	0.18206	1	183390			10226	6668	5766	5766	13216	13216					0.0626072575987564
FVVKVKPWD	9	Unmodified	_FVVKVKPWD_					0	0	0			REV__ENSG00000132801|ENST00000255152|ZSWIM3	REV__ENSG00000132801|ENST00000255152|ZSWIM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.26953125	2	559.32386	1116.63317	0.1946	0.00010884	-2.7805	-0.0015552	-2.5859	-0.0014464	559.3212374025082	62.923	0.34824	62.915	62.646	62.994	-0.0085526					21	12	3	0	0	0	0.24913	1	15507	15507		12.532	6.3258	1	111130	+		10227	15589	5767	5767	13217	13217					0.07951496753707943
FVVMFGNSMLL	11	Unmodified	_FVVMFGNSMLL_					0	0	0		ENST00000417811.2_3_7:32660640-32715635:-|nuORF	ENST00000417811.2_3_7:32660640-32715635:-|nuORF	ENST00000417811.2_3_7:32660640-32715635:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.31549072265625	3	419.883856	1256.62974	-0.20961	-8.801E-05	-0.81805	-0.00034349	-1.0277	-0.0004315	419.8836498535282	23.551	0.21941	23.551	23.48	23.699	0					10	7	2	0	0	0	0.32813	1	3525	3525		8.4443	1.8139	1	40082			10228	10339	5768	5768	13218	13218					0.011687425931995676
FVVQNENPF	9	Unmodified	_FVVQNENPF_					0	0	0			REV__ENSG00000023318|ENST00000262455|ERP44	REV__ENSG00000023318|ENST00000262455|ERP44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.2718505859375	2	547.269281	1092.52401	0.17753	9.7156E-05	2.4301	0.0013299	2.6076	0.0014271	547.270722236003	75.725	0.98465	75.725	75.235	76.22	0					114	35	4	0	0	0	0.17787	1	19523	19523		26.884	0.61551	1	1206900	+		10229	13470	5769	5769	13219	13219					-0.018551339364194064
FVVVQFKDMD	10	Unmodified	_FVVVQFKDMD_					0	0	0		ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;nc|ENSG00000204842|Q99700-2|ATXN2;nc|ENSG00000204842|Q99700-5|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2	ENSG00000204842|ENST00000673436|ATXN2	ENSG00000204842|ENST00000673436|ATXN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.9010314941406	3	409.874125	1226.60055	-0.070858	-2.9043E-05	-0.42462	-0.00017404	-0.49548	-0.00020308	409.87368871867625	43.083	0.62934	43.083	42.652	43.281	0					39	22	3	0	0	0	0.31597	1	9492	9492		12.175	6.8779	1	325040			10230	8257	5770	5770	13220	13220					-0.0036907843145854713
FVVVQFKDMD	10	Unmodified	_FVVVQFKDMD_					0	0	0		ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;nc|ENSG00000204842|Q99700-2|ATXN2;nc|ENSG00000204842|Q99700-5|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2	ENSG00000204842|ENST00000673436|ATXN2	ENSG00000204842|ENST00000673436|ATXN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9011535644531	3	409.874125	1226.60055	-0.014961	-6.1323E-06	-0.2734	-0.00011206	-0.28837	-0.00011819	409.8737132842122	42.741	0.78337	42.826	42.352	43.135	0.085197					57	28	3	0	0	0	0.31597	1	9353	9353		12.175	7.9852	1	294370			10231	8257	5770	5770	13221	13221					-0.0036907843145854713
FVVVQFKDMD	10	Unmodified	_FVVVQFKDMD_					0	0	0		ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;nc|ENSG00000204842|Q99700-2|ATXN2;nc|ENSG00000204842|Q99700-5|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2	ENSG00000204842|ENST00000673436|ATXN2	ENSG00000204842|ENST00000673436|ATXN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.9009704589844	3	409.874125	1226.60055	-0.067184	-2.7537E-05	-3.7635	-0.0015425	-3.8306	-0.0015701	409.8722472234905	43.046	0.15879	43.137	43.014	43.172	0.090393					6	5	2	0	0	0	0.31701	1	9374	9374		10.899	3.29	1	121440			10232	8257	5770	5770	13222	13222					-0.0036907843145854713
FVWVRVEH	8	Unmodified	_FVWVRVEH_					0	0	0			REV__ENST00000490711.5_1_6:32137055-32144296:-|nuORF	REV__ENST00000490711.5_1_6:32137055-32144296:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2952880859375	2	536.290351	1070.56615	0.55621	0.00029829	-1.0209	-0.00054752	-0.46473	-0.00024923	536.2901081344882	71.998	2.1404	71.998	71.521	73.661	0					284	77	6	0	0	0	0.4397	1	18281	18281		9.3474	0.75416	1	16195000	+		10233	21605	5771	5771	13223	13223					0.03368886262592241
FVYDTIQLT	9	Unmodified	_FVYDTIQLT_					0	0	0		ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	ENSG00000137812|ENST00000399668|KNL1	ENSG00000137812|ENST00000399668|KNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3013305664062	2	550.28714	1098.55973	0.37479	0.00020624	1.0364	0.00057031	1.4112	0.00077656	550.2877080673921	73.178	0.50641	73.178	72.961	73.468	0					29	17	2	0	0	0	0.22674	1	18626	18626		22.736	1.1993	1	268200			10234	4078	5772	5772	13224	13224					0.01438903520556778
FVYDTIQLT	9	Unmodified	_FVYDTIQLT_					0	0	0		ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	ENSG00000137812|ENST00000399668|KNL1	ENSG00000137812|ENST00000399668|KNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.277099609375	2	550.28714	1098.55973	0.34805	0.00019153	0.39677	0.00021833	0.74481	0.00040986	550.2875004323047	73.216	0.5232	73.269	72.948	73.471	0.053833					33	18	3	0	0	0	0.12642	1	18616	18616		34.402	1.616	1	195990			10235	4078	5772	5772	13225	13225					0.01438903520556778
FVYMYVHTAD	10	Unmodified	_FVYMYVHTAD_					0	0	0			REV__ENSG00000141526|ENST00000582743|SLC16A3	REV__ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.2831420898438	2	623.284074	1244.5536	0.32028	0.00019963	-1.5363	-0.00095753	-1.216	-0.00075791	623.2829049355616	79.868	0.68955	79.868	79.55	80.24	0					56	25	3	0	0	0	0.29978	3	20694	20694;20741;20794		20.454	10.38	1	321840	+		10236	16080	5773	5773	13226;13227;13228	13226					-0.058899379825788856
FVYMYVHTAD	10	Unmodified	_FVYMYVHTAD_					0	0	0			REV__ENSG00000141526|ENST00000582743|SLC16A3	REV__ENSG00000141526|ENST00000582743|SLC16A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.7850952148438	2	623.284074	1244.5536	0.32028	0.00019963	-1.5363	-0.00095753	-1.216	-0.00075791	623.2829049355616	79.868	0.68955	79.868	79.55	80.24	0					56	25	3	0	0	0	0.30079	1	20741	20741		20.454	9.6297	1	321840	+		10237	16080	5773	5773	13229	13229					-0.058899379825788856
FVYMYVHTAD	10	Unmodified	_FVYMYVHTAD_					0	0	0			REV__ENSG00000141526|ENST00000582743|SLC16A3	REV__ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.2830810546875	2	623.284074	1244.5536	0.22396	0.00013959	-1.3713	-0.00085469	-1.1473	-0.0007151	623.2830789103026	79.909	0.55045	79.88	79.62	80.171	-0.028931					46	19	3	0	0	0	0.29978	2	20707	20707;20760		20.454	9.6297	1	355320	+		10238	16080	5773	5773	13230;13231	13230					-0.058899379825788856
FVYMYVHTAD	10	Unmodified	_FVYMYVHTAD_					0	0	0			REV__ENSG00000141526|ENST00000582743|SLC16A3	REV__ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	623.284074	1244.5536	0.086357	5.3825E-05	-1.2865	-0.00080188	-1.2002	-0.00074805	623.2831180161651	79.772	0.64301	79.834	79.594	80.237	0.061417	-0.026679	0.00012151	NaN	20.454	54	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437770	+		10239	16080	5773	5773							-0.058899379825788856
FVYMYVHTAD	10	Unmodified	_FVYMYVHTAD_					0	0	0			REV__ENSG00000141526|ENST00000582743|SLC16A3	REV__ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	623.284074	1244.5536	0.22396	0.00013959	-1.3713	-0.00085469	-1.1473	-0.0007151	623.2830789103026	79.909	0.55045	79.88	79.62	80.171	-0.028931	0.019519	1.5873E-05	NaN	20.454	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355320	+		10240	16080	5773	5773							-0.058899379825788856
FVYPFYTL	8	Unmodified	_FVYPFYTL_					0	0	0		ENST00000524739.1_1_11:134129171-134129964:+|nuORF;ENST00000527082.5_1_11:134129171-134129738:+|nuORF	ENST00000524739.1_1_11:134129171-134129964:+|nuORF	ENST00000524739.1_1_11:134129171-134129964:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2694702148438	2	525.270761	1048.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.11	1	117.09	116.59	117.59	-0.022781								0	0	0	0.37992	1	30323	30323		0.79363	0	1				10241	11525	5774	5774	13232	13232					0.004647411883752284
FVYQLQEF	8	Unmodified	_FVYQLQEF_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7947998046875	2	537.26875	1072.52295	0.41463	0.00022277	0.54325	0.00029187	0.95788	0.00051464	537.2687679903447	57.913	0.84016	57.998	57.714	58.554	0.085617					54	30	3	0	0	0	0.34092	1	14004	14004		13.508	0.97634	1	218600	+		10242	17310	5775	5775	13233	13233					-0.010413483053298478
FVYQLQEF	8	Unmodified	_FVYQLQEF_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2515869140625	2	537.26875	1072.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.881	1	65.869	65.369	66.369	-0.011337								0	0	0	0.33941	1	16447	16447		19.439	2.4967	1		+		10243	17310	5775	5775	13234	13234					-0.010413483053298478
FVYQSLTQI	9	Unmodified	_FVYQSLTQI_					0	0	0			REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF	REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2774658203125	2	549.795132	1097.57571	0.41713	0.00022934	0.14969	8.23E-05	0.56682	0.00031163	550.296244324565	70.669	2.0754	70.669	70.325	72.4	0					215	74	3	0	0	0	0.19747	1	18366	18366		24.021	5.6475	1	28040000	+		10244	20784	5776	5776	13235	13235					0.030826097574845335
FVYQSLTQI	9	Unmodified	_FVYQSLTQI_					0	0	0			REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF	REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7589111328125	2	549.795132	1097.57571	0.41713	0.00022934	0.14969	8.23E-05	0.56682	0.00031163	550.296244324565	70.669	2.0754	70.669	70.325	72.4	0					215	74	3	0	0	0	0.23749	1	18129	18129		20.415	6.7997	1	28040000	+		10245	20784	5776	5776	13236	13236					0.030826097574845335
FVYQSLTQI	9	Unmodified	_FVYQSLTQI_					0	0	0			REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF	REV__ENST00000412768.1_1_9:94897097-94898934:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7589721679688	2	549.795132	1097.57571	0.51353	0.00028234	-0.18502	-0.00010172	0.32852	0.00018062	550.2961330608579	70.744	2.1373	70.719	70.353	72.491	-0.024864					230	76	5	0	0	0	0.21538	1	18117	18117		26.268	4.678	1	28848000	+		10246	20784	5776	5776	13237	13237					0.030826097574845335
FVYSEGQPF	9	Unmodified	_FVYSEGQPF_					0	0	0		ENSG00000128394|ENST00000308521|APOBEC3F	ENSG00000128394|ENST00000308521|APOBEC3F	ENSG00000128394|ENST00000308521|APOBEC3F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2691040039062	2	537.250557	1072.48656	0.67427	0.00036225	0.090322	4.8526E-05	0.7646	0.00041078	537.2505981410936	50.793	0.27058	50.84	50.794	51.064	0.046574					11	9	2	0	0	0	0.26879	1	11835	11835		13.508	1.8676	1	140630			10247	3367	5777	5777	13238	13238					-0.046782252020420856
FVYTGRLT	8	Unmodified	_FVYTGRLT_					0	0	0		ENSG00000168427|ENST00000409223|KLHL30	ENSG00000168427|ENST00000409223|KLHL30	ENSG00000168427|ENST00000409223|KLHL30	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.29742431640625	2	478.763635	955.512717	0.22946	0.00010986	-0.13155	-6.2982E-05	0.09791	4.6876E-05	478.76342446331773	63.087	0.54684	63.078	62.832	63.379	-0.0085526					26	19	2	0	0	0	0.33245	1	15536	15536		8.5933	0	1	166060			10248	6273	5778	5778	13239	13239					0.03318088760090632
FWAVDSTQL	9	Unmodified	_FWAVDSTQL_					0	0	0			REV__nc|ENSG00000119283|Q6ZTA4-2|TRIM67	REV__nc|ENSG00000119283|Q6ZTA4-2|TRIM67	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.3197021484375	2	533.763832	1065.51311	0.35148	0.0001876	-0.77195	-0.00041204	-0.42047	-0.00022443	533.7635048970384	27.337	0.57969	27.337	27.063	27.643	0					40	19	3	0	0	0	0.15943	1	4611	4611		32.786	3.3485	1	258550	+		10249	15034	5779	5779	13240	13240					-0.017025363107222802
FWAVDSTQL	9	Unmodified	_FWAVDSTQL_					0	0	0			REV__nc|ENSG00000119283|Q6ZTA4-2|TRIM67	REV__nc|ENSG00000119283|Q6ZTA4-2|TRIM67	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.3196411132812	2	533.763832	1065.51311	0.14244	7.603E-05	-0.5315	-0.00028369	-0.38906	-0.00020766	533.7636355687346	27.301	0.65234	27.279	27.041	27.693	-0.021412					47	22	3	0	0	0	0.15943	1	4610	4610		39.95	3.4435	1	316710	+		10250	15034	5779	5779	13241	13241					-0.017025363107222802
FWFQGQELKI	10	Unmodified	_FWFQGQELKI_					0	0	0		ENST00000356218.8_1_14:51955989-52156529:+|nuORF	ENST00000356218.8_1_14:51955989-52156529:+|nuORF	ENST00000356218.8_1_14:51955989-52156529:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	648.3423461914062	2	648.342781	1294.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.05	1	91.051	90.551	91.551	0.00046539								0	0	0	0.37664	1	24150	24150		3.5965	1.098	1				10251	9617	5780	5780	13242	13242					0.035459629485103505
FWITIQRESL	10	Unmodified	_FWITIQRESL_					0	0	0			REV__ENSG00000159184|ENST00000290295|HOXB13	REV__ENSG00000159184|ENST00000290295|HOXB13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8882751464844	3	431.571434	1291.69247	0.24142	0.00010419	1.1	0.00047472	1.3414	0.0005789	432.2400387976184	34.017	0.4989	34.017	33.808	34.306	0					49	17	4	0	0	0	0.31867	1	6726	6726		7.9454	2.8979	1	129900	+		10252	16840	5781	5781	13243	13243					0.05829347977237376
FWLAIERRAS	10	Unmodified	_FWLAIERRAS_					0	0	0			REV__ENSG00000103024|ENST00000219302|NME3	REV__ENSG00000103024|ENST00000219302|NME3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.2457580566406	3	416.899773	1247.67749	0.006916	2.8833E-06	1.7941	0.00074798	1.8011	0.00075086	416.90041707717063	16.838	0.16377	16.724	16.667	16.831	-0.11434					7	5	2	0	0	0	0.38773	1	1465	1465		3.0723	0.63748	1	39733	+		10253	14347	5782	5782	13244	13244					0.0635590089989364
FWLCHCLS	8	Unmodified	_FWLCHCLS_					0	0	0			REV__ENST00000293880.9_1_11:57100225-57103093:-|nuORF	REV__ENST00000293880.9_1_11:57100225-57103093:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7754821777344	2	504.725141	1007.43573	0.42578	0.0002149	1.7953	0.00090615	2.2211	0.001121	504.72605177163564	72.597	0.53326	72.597	72.428	72.961	0					31	19	2	0	0	0	0.34046	1	18502	18502		9.3474	0	1	188780	+		10254	19769	5783	5783	13245	13245					-0.06769169052245161
FWLFLFFGYLS	11	Unmodified	_FWLFLFFGYLS_					0	0	0			REV__ENSG00000159618|ENST00000349457|ADGRG5	REV__ENSG00000159618|ENST00000349457|ADGRG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.26214599609375	3	480.584792	1438.73255	0.44789	0.00021525	0.99054	0.00047604	1.4384	0.00069128	480.58531915530665	20.973	0.47562	20.92	20.613	21.088	-0.05291					36	16	3	0	0	0	0.33094	1	2724	2724		7.4771	3.0709	1	62872	+		10255	16861	5784	5784	13246	13246					0.030728946478120633
FWLHRYEA	8	Unmodified	_FWLHRYEA_					0	0	0		ENST00000417775.5_1_1:75190514-75198761:-|nuORF	ENST00000417775.5_1_1:75190514-75198761:-|nuORF	ENST00000417775.5_1_1:75190514-75198761:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2796630859375	2	561.279983	1120.54541	0.31764	0.00017828	-0.47804	-0.00026831	-0.1604	-9.0028E-05	561.2796371465209	20.365	1.1446	20.365	19.768	20.912	0					108	41	4	0	0	0	0.45169	1	2585	2585		5.2307	0	1	827250			10256	10338	5785	5785	13247	13247					-0.010037041170562588
FWPKLTTTLL	10	Unmodified	_FWPKLTTTLL_					0	0	0		ENST00000299106.8_2_11:134019136-134019346:+|nuORF	ENST00000299106.8_2_11:134019136-134019346:+|nuORF	ENST00000299106.8_2_11:134019136-134019346:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9158020019531	3	407.241025	1218.70125	-0.16458	-6.7025E-05	-2.2249	-0.00090607	-2.3895	-0.0009731	407.24034176416626	33.714	0.21862	33.781	33.633	33.852	0.066704					12	7	2	0	0	0	0.30504	1	6572	6572		21.59	1.1756	1	73019			10257	9212	5786	5786	13248	13248					0.10064321613685934
FWPQVTLN	8	Unmodified	_FWPQVTLN_					0	0	0		ENST00000418251.6_1_2:113931616-113943025:+|nuORF;PSD4|p.K506Rfs*13|1|0.18|ENSG00000125637|chr2:113186140-113186140|A/-|frameshift_variant;nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;ENST00000485525.5_1_2:113931616-113943025:+|nuORF	ENST00000418251.6_1_2:113931616-113943025:+|nuORF	ENST00000418251.6_1_2:113931616-113943025:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7633361816406	2	502.763635	1003.51272	-0.018719	-9.4111E-06	-1.056	-0.00053092	-1.0747	-0.00054033	502.7630622609788	27.81	0.72911	27.788	27.587	28.316	-0.021412					31	19	2	0	0	0	0.42371	1	4787	4787		14.838	0.93222	1	230570			10258	3219	5787	5787	13249	13249					0.011100887600946407
FWPQVTLN	8	Unmodified	_FWPQVTLN_					0	0	0		ENST00000418251.6_1_2:113931616-113943025:+|nuORF;PSD4|p.K506Rfs*13|1|0.18|ENSG00000125637|chr2:113186140-113186140|A/-|frameshift_variant;nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;ENST00000485525.5_1_2:113931616-113943025:+|nuORF	ENST00000418251.6_1_2:113931616-113943025:+|nuORF	ENST00000418251.6_1_2:113931616-113943025:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.76318359375	2	502.763635	1003.51272	-0.09089	-4.5696E-05	-0.83779	-0.00042121	-0.92868	-0.00046691	502.76309561311456	27.828	0.59186	27.828	27.595	28.186	-0.00073433					32	20	2	0	0	0	0.42371	1	4798	4798		14.838	1.7958	1	225380			10259	3219	5787	5787	13250	13250					0.011100887600946407
FWPQVTLN	8	Unmodified	_FWPQVTLN_					0	0	0		ENST00000418251.6_1_2:113931616-113943025:+|nuORF;PSD4|p.K506Rfs*13|1|0.18|ENSG00000125637|chr2:113186140-113186140|A/-|frameshift_variant;nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4;ENST00000485525.5_1_2:113931616-113943025:+|nuORF	ENST00000418251.6_1_2:113931616-113943025:+|nuORF	ENST00000418251.6_1_2:113931616-113943025:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	502.763635	1003.51272	0.023186	1.1657E-05	-1.178	-0.00059226	-1.1548	-0.00058061	502.7630321793238	27.804	0.56379	27.804	27.589	28.153	0	-0.0026606	-0.00017815	NaN	14.838	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279800			10260	3219	5787	5787							0.011100887600946407
FWQRRDKK	8	Unmodified	_FWQRRDKK_					0	0	0			REV__ENST00000472487.5_1_1:59122047-59122251:-|nuORF	REV__ENST00000472487.5_1_1:59122047-59122251:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.3262939453125	2	582.325257	1162.63596	0.1143	6.6561E-05	1.3053	0.00076009	1.4196	0.00082665	582.3259377280336	15.797	0.45625	15.733	15.517	15.973	-0.064414					41	15	4	0	0	0	0.46517	1	1176	1176		0.6015	0.14316	1	121330	+		10261	21369	5788	5788	13251	13251					0.061147649312033536
FWRIAWRFWRI	11	Unmodified	_FWRIAWRFWRI_					0	0	0		ENST00000419746.5_1_2:179403628-179404009:+|nuORF	ENST00000419746.5_1_2:179403628-179404009:+|nuORF	ENST00000419746.5_1_2:179403628-179404009:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.82958984375	3	546.305245	1635.89391	0.44499	0.0002431	-2.397	-0.0013095	-1.952	-0.0010664	546.638325269501	67.579	0.5002	67.579	67.309	67.809	0					28	17	3	0	0	0	0.33347	1	16930	16930		0.45452	0.45452	1	220470			10262	10354	5789	5789	13252	13252					0.10139501524236039
FWRLWVRV	8	Unmodified	_FWRLWVRV_					0	0	0			REV__ENST00000264649.10_1_17:40610912-40612943:+|nuORF	REV__ENST00000264649.10_1_17:40610912-40612943:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3374633789062	2	581.337636	1160.66072	0.14914	8.6698E-05	-0.85593	-0.00049758	-0.70679	-0.00041088	581.3370437437627	23.802	1.733	23.802	23.11	24.843	0					134	59	4	0	0	0	0.46491	1	3696	3696		0.69038	0.088878	1	1463700	+		10263	19641	5790	5790	13253	13253					0.0868144480459705
FWTWCLFL	8	Unmodified	_FWTWCLFL_					0	0	0		nc|ENSG00000166471|Q5BJD5-2|TMEM41B	nc|ENSG00000166471|Q5BJD5-2|TMEM41B	nc|ENSG00000166471|Q5BJD5-2|TMEM41B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.81640625	2	558.272781	1114.53101	0.45795	0.00025566	-1.6815	-0.00093875	-1.2236	-0.0006831	558.2718264848492	40.741	0.5505	40.834	40.531	41.082	0.09267					43	20	3	0	0	0	0.34218	1	8693	8693		5.2307	0	1	243780			10264	12816	5791	5791	13254	13254					-0.02167492589592257
FWVFFLFF	8	Unmodified	_FWVFFLFF_					0	0	0			REV__SCCPDH|p.R301W|1|0.15|ENSG00000143653|chr1:246760044-246760044|A/T|missense_variant	REV__SCCPDH|p.R301W|1|0.15|ENSG00000143653|chr1:246760044-246760044|A/T|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8084716796875	2	576.799489	1151.58443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.705	1	93.704	93.204	94.204	-0.00051117								0	0	0	0.34461	1	24964	24964		17.087	0	1		+		10265	23303	5792	5792	13255	13255					0.014696281845999692
FWVRDAVD	8	Unmodified	_FWVRDAVD_					0	0	0			REV__ZDHHC7|p.S280Hfs*5|1|0.38|ENSG00000153786|chr16:84976439-84976439|C/-|frameshift_variant	REV__ZDHHC7|p.S280Hfs*5|1|0.38|ENSG00000153786|chr16:84976439-84976439|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.7784423828125	2	504.250892	1006.48723	0.092379	4.6582E-05	3.2781	0.001653	3.3705	0.0016996	504.25203011163893	15.574	0.58192	15.509	15.36	15.942	-0.064413					26	19	2	0	0	0	0.34198	1	1111	1111		10.824	0	1	42276	+		10266	16633	5793	5793	13256	13256					-0.01575385762339465
FWVWTAAREEE	11	Unmodified	_FWVWTAAREEE_					0	0	0			REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF	REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7500305175781	3	475.226215	1422.65681	0.11568	5.4973E-05	-0.91639	-0.00043549	-0.80071	-0.00038052	475.2257766956325	23.481	0.57664	23.394	23.166	23.742	-0.086517					45	20	3	0	0	0	0.33236	1	3565	3565		4.4062	1.7749	1	147590	+		10267	20796	5794	5794	13257	13257					-0.03760734270417743
FWWLSQHQC	9	Unmodified	_FWWLSQHQC_					0	0	0		ENST00000420798.6_2_X:54956297-54956465:+|nuORF	ENST00000420798.6_2_X:54956297-54956465:+|nuORF	ENST00000420798.6_2_X:54956297-54956465:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.3211059570312	2	617.776751	1233.53895	0.15506	9.5791E-05	0.69838	0.00043144	0.85344	0.00052723	617.7776142371089	70.654	0.30202	70.714	70.602	70.904	0.060783					20	10	3	0	0	0	0.25431	1	17902	17902		9.3831	0	1	165750			10268	10365	5795	5795	13258	13258					-0.06847965340057272
FWYITALKE	9	Unmodified	_FWYITALKE_					0	0	0			REV__ENSG00000171759|ENST00000553106|PAH	REV__ENSG00000171759|ENST00000553106|PAH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3591918945312	2	585.813325	1169.6121	0.34079	0.00019964	-1.2437	-0.0007286	-0.90296	-0.00052896	586.3128278015251	66.41	0.27338	66.494	66.327	66.6	0.083832					12	9	2	0	0	0	0.25066	1	16580	16580		11.64	4.9171	1	62967	+		10269	17662	5796	5796	13259	13259					0.03407486654168679
FWYVRLLDF	9	Unmodified	_FWYVRLLDF_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.23486328125	3	420.225486	1257.65463	0.19918	8.3702E-05	2.9427	0.0012366	3.1419	0.0013203	420.2264004875033	43.116	0.13115	43.193	43.075	43.206	0.077515					6	4	2	0	0	0	0.27532	1	9440	9440		8.1555	0	1	169670			10270	1424	5797	5797	13260	13260					0.036108817824015205
FYAELYHII	9	Unmodified	_FYAELYHII_					0	0	0		ENST00000559005.2_1_14:24612620-24612898:-|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000559005.2_1_14:24612620-24612898:-|nuORF	ENST00000559005.2_1_14:24612620-24612898:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.8052978515625	2	584.8055	1167.59645	0.38374	0.00022441	-0.59804	-0.00034974	-0.21431	-0.00012533	584.8050943524685	71.658	1.2357	71.658	71.431	72.667	0					88	44	3	0	0	0	0.0014051	1	18236	18236		117.6	70.678	1	829610			10271	1645	5798	5798	13261	13261					0.0193520013710895
FYAELYHII	9	Unmodified	_FYAELYHII_					0	0	0		ENST00000559005.2_1_14:24612620-24612898:-|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000559005.2_1_14:24612620-24612898:-|nuORF	ENST00000559005.2_1_14:24612620-24612898:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.8051147460938	2	584.8055	1167.59645	0.291	0.00017018	-0.38321	-0.0002241	-0.092205	-5.3922E-05	584.8051326910626	71.605	0.76782	71.661	71.43	72.198	0.056572					79	27	4	0	0	0	0.000573	1	18210	18210		109.63	79.404	1	738990			10272	1645	5798	5798	13262	13262					0.0193520013710895
FYAELYHII	9	Unmodified	_FYAELYHII_					0	0	0		ENST00000559005.2_1_14:24612620-24612898:-|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000559005.2_1_14:24612620-24612898:-|nuORF	ENST00000559005.2_1_14:24612620-24612898:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2714233398438	2	584.8055	1167.59645	0.41206	0.00024098	2.4269	0.0014193	2.839	0.0016603	584.8057789191549	72.52	0.75831	72.574	72.113	72.871	0.053841					47	27	3	0	0	0	0.20651	1	18360	18360		26.884	12.978	1	146830			10273	1645	5798	5798	13263	13263					0.0193520013710895
FYAELYHII	9	Unmodified	_FYAELYHII_					0	0	0		ENST00000559005.2_1_14:24612620-24612898:-|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENSG00000100911|ENST00000216802|PSME2	ENST00000559005.2_1_14:24612620-24612898:-|nuORF	ENST00000559005.2_1_14:24612620-24612898:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8049926757812	2	584.8055	1167.59645	0.4344	0.00025404	-0.55978	-0.00032736	-0.12538	-7.3323E-05	584.8050632210947	71.751	1.2592	71.724	71.426	72.686	-0.027275					107	44	4	0	0	0	0.00033206	1	18233	18233		131.3	84.377	1	941740			10274	1645	5798	5798	13264	13264					0.0193520013710895
FYAERYET	8	Unmodified	_FYAERYET_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;nc|ENSG00000172915|Q8NFP9-3|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.29052734375	2	539.745639	1077.47673	0.66564	0.00035928	1.3942	0.00075249	2.0598	0.0011118	539.74634411075	56.499	0.7663	56.578	56.331	57.097	0.078671					43	28	2	0	0	0	0.3366	1	13544	13544		18.135	18.135	1	522960			10275	6673	5799	5799	13265	13265					-0.05891413207450569
FYAERYET	8	Unmodified	_FYAERYET_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;nc|ENSG00000172915|Q8NFP9-3|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2908935546875	2	539.745639	1077.47673	0.90122	0.00048643	0.58063	0.00031339	1.4818	0.00079982	539.7462502279643	56.782	0.77093	56.763	56.456	57.227	-0.019081					59	27	4	0	0	0	0.3366	1	13595	13595		18.135	3.2967	1	556140			10276	6673	5799	5799	13266	13266					-0.05891413207450569
FYAHSLVEL	9	Unmodified	_FYAHSLVEL_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	ENSG00000122299|ENST00000355758|ZC3H7A;ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3032836914062	2	539.782025	1077.5495	0.4874	0.00026309	-0.046573	-2.5139E-05	0.44082	0.00023795	539.7816943522222	57.898	0.32367	57.983	57.788	58.112	0.085617					24	11	3	0	0	0	0.19839	1	13957	13957		28.487	10.34	1	253540			10277	3037;23414	5800	5800	13267	13267					0.013823405859966442
FYALVSQEL	9	Unmodified	_FYALVSQEL_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.28271484375	2	535.281857	1068.54916	0.5398	0.00028895	0.36097	0.00019322	0.90077	0.00048217	535.2821448580047	71.507	0.72989	71.507	71.233	71.963	0					51	25	3	0	0	0	0.064268	1	18170	18170		47.594	26.057	1	486730			10278	5089	5801	5801	13268	13268					0.017629208661446683
FYALVSQEL	9	Unmodified	_FYALVSQEL_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.2823486328125	2	535.281857	1068.54916	0.3316	0.0001775	0.28656	0.00015339	0.61816	0.00033089	535.2819901720627	71.421	0.90562	71.478	71.238	72.144	0.056572					60	32	2	0	0	0	0.086462	1	18136	18136		40.239	18.702	1	1023200			10279	5089	5801	5801	13269	13269					0.017629208661446683
FYALVSQEL	9	Unmodified	_FYALVSQEL_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.28271484375	2	535.281857	1068.54916	0.55743	0.00029838	0.217	0.00011615	0.77442	0.00041453	535.2820263440047	71.548	0.99405	71.521	71.262	72.256	-0.027275					60	35	2	0	0	0	0.04299	2	18177	18170;18177		55.503	27.874	1	863340			10280	5089	5801	5801	13270;13271	13271					0.017629208661446683
FYALYIVLPI	10	Unmodified	_FYALYIVLPI_					0	0	0			REV__ENST00000463284.2_1_7:22852718-22862419:-|nuORF	REV__ENST00000463284.2_1_7:22852718-22862419:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.358154296875	2	606.357368	1210.70018	0.05515	3.344E-05	1.4341	0.00086959	1.4893	0.00090303	606.3583640440854	106.33	0.1495	106.33	106.26	106.41	0					47	16	5	0	0	0	0.35073	1	28104	28104		12.532	2.4576	1	2540000	+		10281	21249	5802	5802	13272	13272					0.10326107244782179
FYALYIVLPI	10	Unmodified	_FYALYIVLPI_					0	0	0			REV__ENST00000463284.2_1_7:22852718-22862419:-|nuORF	REV__ENST00000463284.2_1_7:22852718-22862419:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.358642578125	2	606.357368	1210.70018	0.2711	0.00016438	1.1309	0.00068572	1.402	0.00085011	606.358356866509	106.35	0.22166	106.34	106.19	106.41	-0.0060501					34	15	3	0	0	0	0.35073	1	28119	28119		12.532	0.29089	1	1911600	+		10282	21249	5802	5802	13273	13273					0.10326107244782179
FYALYIVLPI	10	Unmodified	_FYALYIVLPI_					0	0	0			REV__ENST00000463284.2_1_7:22852718-22862419:-|nuORF	REV__ENST00000463284.2_1_7:22852718-22862419:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	606.357368	1210.70018	0.05515	3.344E-05	1.4341	0.00086959	1.4893	0.00090303	606.3583640440854	106.33	0.1495	106.33	106.26	106.41	0	-0.0068369	0.00025427	NaN	12.532	47	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2540000	+		10283	21249	5802	5802							0.10326107244782179
FYALYIVLPI	10	Unmodified	_FYALYIVLPI_					0	0	0			REV__ENST00000463284.2_1_7:22852718-22862419:-|nuORF	REV__ENST00000463284.2_1_7:22852718-22862419:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	606.357368	1210.70018	0.2711	0.00016438	1.1309	0.00068572	1.402	0.00085011	606.358356866509	106.35	0.22166	106.34	106.19	106.41	-0.0060501	0.0055126	-0.00011346	NaN	12.532	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1911600	+		10284	21249	5802	5802							0.10326107244782179
FYALYIVLPI	10	Unmodified	_FYALYIVLPI_					0	0	0			REV__ENST00000463284.2_1_7:22852718-22862419:-|nuORF	REV__ENST00000463284.2_1_7:22852718-22862419:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	606.357368	1210.70018	0.27413	0.00016622	1.0955	0.00066428	1.3696	0.0008305	606.3583906648893	106.33	0.15585	106.34	106.26	106.42	0.0050507	0.0013243	-0.00015635	NaN	12.532	46	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2400900	+		10285	21249	5802	5802							0.10326107244782179
FYAMILGLKC	10	Unmodified	_FYAMILGLKC_					0	0	0			REV__ENSG00000127995|ENST00000297273|CASD1	REV__ENSG00000127995|ENST00000297273|CASD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.8064575195312	2	579.806131	1157.59771	0.55197	0.00032003	0.0067802	3.9312E-06	0.55875	0.00032397	579.8061583224929	37.6	1.6955	37.6	37.207	38.903	0					165	60	5	0	0	0	0.24715	1	7762	7762		26.884	26.884	1	8555800	+		10286	15360	5803	5803	13274	13274					0.02521374910020313
FYATSIFQL	9	Unmodified	_FYATSIFQL_					0	0	0		ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36	ENSG00000163482|ENST00000295709|STK36	ENSG00000163482|ENST00000295709|STK36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2846069335938	2	545.2844	1088.55425	0.64826	0.00035349	-0.15038	-8.1998E-05	0.49788	0.00027149	545.2841831332831	86.575	0.64037	86.575	86.326	86.966	0					43	25	2	0	0	0	0.0046246	2	22793	22793;22816		89.401	37.132	1	377040			10287	5687	5804	5804	13275;13276	13275					0.013512247287508217
FYATSIFQL	9	Unmodified	_FYATSIFQL_					0	0	0		ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36	ENSG00000163482|ENST00000295709|STK36	ENSG00000163482|ENST00000295709|STK36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2844848632812	2	545.2844	1088.55425	0.66495	0.00036259	1.4183	0.00077336	2.0832	0.0011359	545.2841033120276	86.547	1.2431	86.631	86.258	87.501	0.084251					100	52	3	0	0	0	0.0098873	2	22735	22735;22789		79.596	27.328	1	286840			10288	5687	5804	5804	13277;13278	13277					0.013512247287508217
FYATSIFQL	9	Unmodified	_FYATSIFQL_					0	0	0		ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36	ENSG00000163482|ENST00000295709|STK36	ENSG00000163482|ENST00000295709|STK36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.7756958007812	2	545.2844	1088.55425	0.75715	0.00041286	-0.49156	-0.00026804	0.26558	0.00014482	545.2839911733777	86.636	0.59392	86.63	86.342	86.936	-0.0056229					43	23	2	0	0	0	0.0046246	3	22743	22743;22787;22797		89.401	28.043	1	234170			10289	5687	5804	5804	13279;13280;13281	13279					0.013512247287508217
FYDCDRDF	8	Unmodified	_FYDCDRDF_					0	0	0			REV__ENST00000461830.6_1_1:176012335-176050379:-|nuORF	REV__ENST00000461830.6_1_1:176012335-176050379:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.83251953125	2	540.708199	1079.40185	0.57884	0.00031298	-3.358	-0.0018157	-2.7792	-0.0015027	541.2075296013084	68.8	0.34206	68.872	68.758	69.1	0.071938					19	12	2	0	0	0	0.34297	1	17338	17338		6.3541	5.2826	1	204910	+		10290	16158	5805	5805	13282	13282					-0.13467919010327023
FYDDSKFTIK	10	Unmodified	_FYDDSKFTIK_					0	0	0			REV__nc|ENSG00000170962|Q9GZP0-2|PDGFD	REV__nc|ENSG00000170962|Q9GZP0-2|PDGFD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.9186706542969	3	421.880044	1262.6183	0.070305	2.966E-05	1.1343	0.00047853	1.2046	0.00050819	421.88052900561985	44.282	0.60081	44.357	44.122	44.723	0.075047					39	21	3	0	0	0	0.3183	1	9886	9886		8.4443	2.6609	1	298330	+		10291	17611	5806	5806	13283	13283					-0.0025003990494951722
FYDLGGDHL	9	Unmodified	_FYDLGGDHL_					0	0	0			REV__ENSG00000157093|ENST00000287748|LYZL4	REV__ENSG00000157093|ENST00000287748|LYZL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3214721679688	2	518.740357	1035.46616	0.35331	0.00018328	-0.024756	-1.2842E-05	0.32855	0.00017043	518.7402578684772	57.516	0.46133	57.601	57.404	57.865	0.085621					27	16	2	0	0	0	0.17611	1	13870	13870		34.102	34.102	1	461040	+		10292	16771	5807	5807	13284	13284					-0.05015395861846628
FYDLGGDHL	9	Unmodified	_FYDLGGDHL_					0	0	0			REV__ENSG00000157093|ENST00000287748|LYZL4	REV__ENSG00000157093|ENST00000287748|LYZL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.3214111328125	2	518.740357	1035.46616	0.24235	0.00012572	0.031357	1.6266E-05	0.27371	0.00014198	518.7402531508045	57.737	0.50517	57.72	57.555	58.06	-0.0172					28	18	2	0	0	0	0.20651	1	13959	13959		26.884	0	1	442800	+		10293	16771	5807	5807	13285	13285					-0.05015395861846628
FYDLGGDHL	9	Unmodified	_FYDLGGDHL_					0	0	0			REV__ENSG00000157093|ENST00000287748|LYZL4	REV__ENSG00000157093|ENST00000287748|LYZL4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	518.740357	1035.46616	0.39796	0.00020644	0.05511	2.8588E-05	0.45307	0.00023502	518.7401692234245	57.665	0.52187	57.665	57.525	58.046	0	0.0025983	4.336E-05	NaN	34.102	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	473150	+		10294	16771	5807	5807							-0.05015395861846628
FYDMEQPHH	9	Unmodified	_FYDMEQPHH_					0	0	0			REV__ENST00000370620.5_1_X:135748320-135748473:-|nuORF	REV__ENST00000370620.5_1_X:135748320-135748473:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.2489624023438	2	602.248023	1202.48149	0.53451	0.00032191	0.080444	4.8447E-05	0.61496	0.00037036	602.2481030426785	71.484	0.95079	71.484	71.233	72.184	0					115	33	5	0	0	0	0.30623	1	18187	18187		7.9102	2.6133	1	2776000	+		10295	20384	5808	5808	13286	13286					-0.11164852336310105
FYDMEQPHH	9	Unmodified	_FYDMEQPHH_					0	0	0			REV__ENST00000370620.5_1_X:135748320-135748473:-|nuORF	REV__ENST00000370620.5_1_X:135748320-135748473:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	602.248023	1202.48149	0.4562	0.00027474	0.28453	0.00017136	0.74073	0.0004461	602.2481858866222	71.584	1.3344	71.557	71.262	72.596	-0.027275	0.039212	0.00019129	NaN	7.9102	132	47	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3327200	+		10296	20384	5808	5808							-0.11164852336310105
FYDPSPLN	8	Unmodified	_FYDPSPLN_					0	0	0			REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7241516113281	2	476.724175	951.433798	0.24763	0.00011805	0.23287	0.00011101	0.4805	0.00022907	476.72417936943697	56.777	1.0532	56.777	56.471	57.525	0					105	38	4	0	0	0	0.2157	1	13730	13730		40.449	4.4044	1	2386900	+		10297	16426	5809	5809	13287	13287					-0.04386183264864485
FYDPSPLN	8	Unmodified	_FYDPSPLN_					0	0	0			REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.724365234375	2	476.724175	951.433798	0.41694	0.00019877	0.043156	2.0573E-05	0.4601	0.00021934	476.72408535020253	56.69	0.92822	56.769	56.437	57.365	0.078671					108	34	4	0	0	0	0.10069	2	13643	13643;13695		60.39	4.8263	1	2671600	+		10298	16426	5809	5809	13288;13289	13288					-0.04386183264864485
FYDPSPLN	8	Unmodified	_FYDPSPLN_					0	0	0			REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.7242431640625	2	476.724175	951.433798	0.58788	0.00028026	-0.067677	-3.2263E-05	0.52021	0.00024799	476.7240167097694	56.878	0.98071	56.859	56.541	57.522	-0.019077					102	35	4	0	0	0	0.10069	1	13701	13701		60.39	5.616	1	2455400	+		10299	16426	5809	5809	13290	13290					-0.04386183264864485
FYDYMELASMP	11	Unmodified	_FYDYMELASMP_					0	0	0		ENSG00000206530|ENST00000393845|CFAP44;nc|ENSG00000206530|Q96MT7-1|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.77154541015625	3	456.194647	1365.56211	0.3066	0.00013987	2.2359	0.00102	2.5425	0.0011599	456.52989461061816	29.496	0.10999	29.496	29.441	29.551	0					5	3	2	0	0	0	0.3333	1	5272	5272		1.3296	0.11481	1	67604			10300	8322	5810	5810	13291	13291					-0.1060475212827896
FYEDVLPEF	9	Unmodified	_FYEDVLPEF_					0	0	0		nc|ENSG00000212643|Q15695|ZRSR2P1;ENSG00000169249|ENST00000307771|ZRSR2	nc|ENSG00000212643|Q15695|ZRSR2P1	nc|ENSG00000212643|Q15695|ZRSR2P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.7713012695312	2	579.771322	1157.52809	0.54173	0.00031408	-0.015323	-8.8838E-06	0.52641	0.0003052	579.7714290354431	83.614	0.56421	83.614	83.321	83.885	0					37	20	2	0	0	0	0.17787	1	21892	21892		26.884	14.643	1	200410			10301	6343	5811	5811	13292	13292					-0.04437089233374536
FYEDVLPEF	9	Unmodified	_FYEDVLPEF_					0	0	0		nc|ENSG00000212643|Q15695|ZRSR2P1;ENSG00000169249|ENST00000307771|ZRSR2	nc|ENSG00000212643|Q15695|ZRSR2P1	nc|ENSG00000212643|Q15695|ZRSR2P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.7711181640625	2	579.771322	1157.52809	0.47713	0.00027663	-0.13421	-7.781E-05	0.34292	0.00019882	579.7712306117766	83.424	0.57078	83.501	83.302	83.873	0.077095					39	22	2	0	0	0	0.23007	1	21873	21873		19.257	14.026	1	211470			10302	6343	5811	5811	13293	13293					-0.04437089233374536
FYEDVLPEF	9	Unmodified	_FYEDVLPEF_					0	0	0		nc|ENSG00000212643|Q15695|ZRSR2P1;ENSG00000169249|ENST00000307771|ZRSR2	nc|ENSG00000212643|Q15695|ZRSR2P1	nc|ENSG00000212643|Q15695|ZRSR2P1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	579.771322	1157.52809	0.48902	0.00028352	-0.20487	-0.00011878	0.28415	0.00016474	579.7712115905608	83.556	0.58179	83.539	83.314	83.896	-0.016823	-0.01229	-6.8782E-05	NaN	26.884	44	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241990			10303	6343	5811	5811							-0.04437089233374536
FYEFGPGKY	9	Unmodified	_FYEFGPGKY_					0	0	0			REV__ENSG00000166133|ENST00000315616|RPUSD2	REV__ENSG00000166133|ENST00000315616|RPUSD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8014526367188	2	554.260925	1106.5073	0.26366	0.00014613	-0.68639	-0.00038044	-0.42273	-0.0002343	554.2607530007853	16.777	0.43356	16.777	16.548	16.981	0					23	14	2	0	0	0	0.26168	1	1441	1441		1.8442	0	1	87124			10304	17294	5812	5812	13294	13294					-0.04169634822369517
FYEGALTLI	9	Unmodified	_FYEGALTLI_					0	0	0			REV__ENSG00000134452|ENST00000362091|FBH1	REV__ENSG00000134452|ENST00000362091|FBH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2562866210938	2	513.778951	1025.54335	0.59052	0.0003034	-0.063628	-3.2691E-05	0.52689	0.00027071	513.7786511619606	83.659	1.2755	83.659	82.679	83.954	0					97	48	4	0	0	0	0.25526	1	21776	21776		7.9102	2.6795	1	1009600	+		10305	15676	5813	5813	13295	13295					0.03159822354473363
FYEGALTLI	9	Unmodified	_FYEGALTLI_					0	0	0			REV__ENSG00000134452|ENST00000362091|FBH1	REV__ENSG00000134452|ENST00000362091|FBH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	513.778951	1025.54335	0.42504	0.00021838	-0.22086	-0.00011347	0.20418	0.0001049	513.778720657605	83.602	0.62344	83.679	83.302	83.925	0.077095	0.011227	-8.5117E-05	NaN	7.9102	75	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	851330	+		10306	15676	5813	5813							0.03159822354473363
FYEIQRSF	8	Unmodified	_FYEIQRSF_					0	0	0			REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L	REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2593994140625	2	545.271824	1088.5291	0.62209	0.00033921	-0.17213	-9.3857E-05	0.44997	0.00024535	545.27203424055	70.207	0.82289	70.185	69.729	70.552	-0.022087					41	29	2	0	0	0	0.41758	1	17838	17838		16.942	1.0951	1	326620	+		10307	14150	5814	5814	13296	13296					-0.011628300738038888
FYEKRTVF	8	Unmodified	_FYEKRTVF_					0	0	0			REV__ENST00000483811.5_1_3:49899222-49899827:-|nuORF	REV__ENST00000483811.5_1_3:49899222-49899827:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2797241210938	2	545.290017	1088.56548	0.54061	0.00029479	0.35974	0.00019616	0.90035	0.00049095	545.2902081117902	52.821	0.91806	52.821	52.55	53.468	0					72	33	3	0	0	0	0.23581	1	12452	12452		38.151	11.268	1	1678200	+		10308	17123	5815	5815	13297	13297					0.024740468228856116
FYEKRTVF	8	Unmodified	_FYEKRTVF_					0	0	0			REV__ENST00000483811.5_1_3:49899222-49899827:-|nuORF	REV__ENST00000483811.5_1_3:49899222-49899827:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.27978515625	2	545.290017	1088.56548	0.83108	0.00045318	0.12982	7.0792E-05	0.9609	0.00052397	545.2900221639876	52.819	0.87298	52.869	52.553	53.426	0.050575					67	31	3	0	0	0	0.23581	1	12448	12448		38.151	11.268	1	1699800	+		10309	17123	5815	5815	13298	13298					0.024740468228856116
FYEKRTVF	8	Unmodified	_FYEKRTVF_					0	0	0			REV__ENST00000483811.5_1_3:49899222-49899827:-|nuORF	REV__ENST00000483811.5_1_3:49899222-49899827:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.27978515625	2	545.290017	1088.56548	0.62561	0.00034114	0.36147	0.00019711	0.98708	0.00053825	545.290249983517	52.97	1.0344	52.961	52.654	53.688	-0.0096054					79	38	3	0	0	0	0.23581	1	12486	12486		38.151	11.268	1	1546600	+		10310	17123	5815	5815	13299	13299					0.024740468228856116
FYESWFRVMLS	11	Unmodified	_FYESWFRVMLS_					0	0	0			REV__ENSG00000114771|ENST00000232892|AADAC	REV__ENSG00000114771|ENST00000232892|AADAC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2694091796875	3	488.904196	1463.69076	0.40689	0.00019893	-0.7556	-0.00036941	-0.3487	-0.00017048	488.9037148119711	35.639	0.59705	35.639	35.52	36.117	0					38	21	2	0	0	0	0.33296	1	7298	7298		2.6312	1.6177	1	366620	+		10311	14846	5816	5816	13300	13300					-0.022540291030509252
FYEVDYNTF	9	Unmodified	_FYEVDYNTF_					0	0	0		ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.8194580078125	2	599.258579	1196.50261	0.31725	0.00019012	0.39062	0.00023408	0.70788	0.0004242	599.2586920557262	69.348	0.63552	69.348	69.097	69.732	0					46	22	3	0	0	0	0.052436	1	17519	17519		74.2	60.585	1	366750			10312	2945	5817	5817	13301	13301					-0.08778563755822688
FYEVDYNTF	9	Unmodified	_FYEVDYNTF_					0	0	0		ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.8193359375	2	599.258579	1196.50261	0.4706	0.00028201	0.006748	4.0438E-06	0.47734	0.00028605	599.2582930397795	69.277	0.54094	69.343	69.123	69.664	0.066048					38	18	3	0	0	0	0.082647	1	17514	17514		61.602	49.962	1	283150			10313	2945	5817	5817	13302	13302					-0.08778563755822688
FYEVDYNTF	9	Unmodified	_FYEVDYNTF_					0	0	0		ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.8192138671875	2	599.258579	1196.50261	0.28379	0.00017006	-0.012578	-7.5376E-06	0.27121	0.00016252	599.2583446736737	69.357	0.52396	69.335	69.123	69.647	-0.022087					40	18	3	0	0	0	0.075068	1	17525	17525		65.474	53.833	1	336160			10314	2945	5817	5817	13303	13303					-0.08778563755822688
FYFIILPGNF	10	Unmodified	_FYFIILPGNF_					0	0	0		ENSG00000176294|ENST00000557677|OR4N2	ENSG00000176294|ENST00000557677|OR4N2	ENSG00000176294|ENST00000557677|OR4N2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.9031066894531	3	410.890104	1229.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.446	1	43.53	43.03	44.03	0.083996								0	0	0	0.3749	1	9533	9533		2.086	0	1				10315	6917	5818	5818	13304	13304					0.042843635509143496
FYFLYEETR	9	Unmodified	_FYFLYEETR_					0	0	0		nc|ENSG00000286014|P0DUD4|SPDYE15;nc|ENSG00000184616|P0DUX1|SPDYE12;ENSG00000273520|ENST00000333385|SPDYE8;ENSG00000262461|ENST00000575125|SPDYE9;ENSG00000186645|ENST00000671986|SPDYE17	nc|ENSG00000286014|P0DUD4|SPDYE15	nc|ENSG00000286014|P0DUD4|SPDYE15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.59259033203125	3	423.20464	1266.59209	0.12247	5.1832E-05	-1.4365	-0.00060792	-1.314	-0.00055609	423.5382935954035	44.577	0.56891	44.646	44.298	44.867	0.068569					31	20	2	0	0	0	0.25949	1	9884	9884		4.897	2.811	1	118520			10316	7634	5819	5819	13305	13305					-0.030543090764240333
FYFLYEETR	9	Unmodified	_FYFLYEETR_					0	0	0		nc|ENSG00000286014|P0DUD4|SPDYE15;nc|ENSG00000184616|P0DUX1|SPDYE12;ENSG00000273520|ENST00000333385|SPDYE8;ENSG00000262461|ENST00000575125|SPDYE9;ENSG00000186645|ENST00000671986|SPDYE17	nc|ENSG00000286014|P0DUD4|SPDYE15	nc|ENSG00000286014|P0DUD4|SPDYE15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.59259033203125	3	423.20464	1266.59209	0.14896	6.304E-05	-1.2126	-0.00051319	-1.0637	-0.00045015	423.5383023732064	44.646	0.57632	44.721	44.307	44.883	0.07505					30	20	2	0	0	0	0.25949	1	9869	9869		4.897	0.70751	1	141280			10317	7634	5819	5819	13306	13306					-0.030543090764240333
FYFLYIFL	8	Unmodified	_FYFLYIFL_					0	0	0			REV__ENST00000568395.1_1_16:2722171-2722456:-|nuORF	REV__ENST00000568395.1_1_16:2722171-2722456:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.2587890625	2	563.304604	1124.59466	0.20271	0.00011419	-2.1414	-0.0012063	-1.9387	-0.0010921	563.303299017199	17.577	0.48752	17.517	17.33	17.817	-0.060429					21	16	2	0	0	0	0.34434	1	1660	1660		0.79363	0	1	32783	+		10318	22393	5820	5820	13307	13307					0.03734191119178831
FYFVLIKNTQ	10	Unmodified	_FYFVLIKNTQ_					0	0	0			REV__nc|ENSG00000086848|Q9H6U8|ALG9	REV__nc|ENSG00000086848|Q9H6U8|ALG9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.8742065429688	2	636.852981	1271.69141	0.31205	0.00019873	0.071673	4.5645E-05	0.38372	0.00024437	636.8529681744616	70.039	0.90272	70.039	69.703	70.605	0					70	32	3	0	0	0	0.30958	1	17886	17886		19.257	1.1106	1	704250	+		10319	13981	5821	5821	13308	13308					0.06643133608326934
FYFYFQTI	8	Unmodified	_FYFYFQTI_					0	0	0			REV__ENSG00000181803|ENST00000320704|OR6S1	REV__ENSG00000181803|ENST00000320704|OR6S1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8209228515625	2	564.773668	1127.53278	0.2654	0.00014989	3.1487	0.0017783	3.4141	0.0019282	564.7750738342207	79.852	0.44251	79.852	79.592	80.035	0					25	16	3	0	0	0	0.3366	1	20727	20727		12.532	1.0368	1	61983	+		10320	18167	5822	5822	13309	13309					-0.025881602999561437
FYGDKMNLF	9	Oxidation (M)	_FYGDKM(Oxidation (M))NLF_		FYGDKM(1)NLF		FYGDKM(140)NLF	0	0	1		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7656860351562	2	575.765517	1149.51648	0.30326	0.0001746	-0.31521	-0.00018149	-0.011955	-6.8832E-06	575.7653547324684	52.781	1.8535	52.781	52.494	54.348	0					160	68	5	0	0	0	0.00012108	6	12418	12371;12418;12469;12484;12525;12534		137.42	65.502	1	8066500			10321	2876	5823	5823	13310;13311;13312;13313;13314;13315	13311		362			-0.05229609528373658
FYGDKMNLF	9	Oxidation (M)	_FYGDKM(Oxidation (M))NLF_		FYGDKM(1)NLF		FYGDKM(150)NLF	0	0	1		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7658081054688	2	575.765517	1149.51648	0.54099	0.00031148	-0.40028	-0.00023047	0.1407	8.1013E-05	575.7653020525491	52.715	1.8494	52.766	52.465	54.314	0.050571					157	68	5	0	0	0	7.3453E-05	5	12400	12355;12400;12446;12474;12520		145.13	73.207	1	7677400			10322	2876	5823	5823	13316;13317;13318;13319;13320	13317		362			-0.05229609528373658
FYGDKMNLF	9	Oxidation (M)	_FYGDKM(Oxidation (M))NLF_		FYGDKM(1)NLF		FYGDKM(130)NLF	0	0	1		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7658081054688	2	575.765517	1149.51648	0.27349	0.00015747	-0.25548	-0.0001471	0.018012	1.0371E-05	575.7653996609804	52.976	2.0337	52.966	52.654	54.688	-0.0096054					190	74	5	0	0	0	0.00019464	5	12467	12416;12467;12521;12528;12580		133.05	70.479	1	8017600			10323	2876	5823	5823	13321;13322;13323;13324;13325	13322		362			-0.05229609528373658
FYGKKFPFF	9	Unmodified	_FYGKKFPFF_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.8133544921875	2	590.813128	1179.6117	0.69769	0.00041221	0.51023	0.00030145	1.2079	0.00071366	591.3149568508213	60.923	0.42077	60.913	60.596	61.016	-0.0094566					29	15	3	0	0	0	0.0085732	1	14919	14919		81.613	56.214	1	780050			10324	3371	5824	5824	13326	13326					0.02908111724968876
FYGKKFPFF	9	Unmodified	_FYGKKFPFF_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	590.813128	1179.6117	0.80258	0.00047417	-0.27269	-0.00016111	0.52989	0.00031307	591.31430997926	60.855	0.44413	60.855	60.548	60.992	0	-0.02452	-0.00057308	NaN	81.613	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	699790			10325	3371	5824	5824							0.02908111724968876
FYGKKFPFF	9	Unmodified	_FYGKKFPFF_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	590.813128	1179.6117	0.69462	0.00041039	0.21697	0.00012819	0.91159	0.00053858	590.8133160403022	60.773	0.34003	60.87	60.67	61.01	0.096985	-0.0094653	5.5153E-06	NaN	81.613	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322730			10326	3371	5824	5824							0.02908111724968876
FYGKYTAEI	9	Unmodified	_FYGKYTAEI_					0	0	0		nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	nc|ENSG00000117614|O95926-2|SYF2	nc|ENSG00000117614|O95926-2|SYF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.7662353515625	2	546.274032	1090.53351	0.64393	0.00035176	0.77008	0.00042067	1.414	0.00077243	546.2739493417433	46.784	0.9531	46.784	46.54	47.493	0					66	33	3	0	0	0	0.003317	2	10539	10539;10548		99.755	67.45	1	2718600			10327	2803	5825	5825	13327;13328	13327					-0.008133656509016873
FYGKYTAEI	9	Unmodified	_FYGKYTAEI_					0	0	0		nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	nc|ENSG00000117614|O95926-2|SYF2	nc|ENSG00000117614|O95926-2|SYF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.27392578125	2	546.274032	1090.53351	0.73015	0.00039886	0.55679	0.00030416	1.2869	0.00070302	546.2737833655618	46.566	1.1052	46.619	46.3	47.405	0.052574					78	40	4	0	0	0	0.00078391	3	10478	10457;10478;10527		125.53	85.572	1	2399800			10328	2803	5825	5825	13329;13330;13331	13330					-0.008133656509016873
FYGKYTAEI	9	Unmodified	_FYGKYTAEI_					0	0	0		nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	nc|ENSG00000117614|O95926-2|SYF2	nc|ENSG00000117614|O95926-2|SYF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.27392578125	2	546.274032	1090.53351	0.57214	0.00031255	0.74632	0.0004077	1.3185	0.00072024	546.2738544328065	46.616	1.1578	46.671	46.383	47.541	0.054371					82	41	4	0	0	0	0.0016712	4	10491	10464;10469;10491;10510		114.2	81.896	1	2707500			10329	2803	5825	5825	13332;13333;13334;13335	13334					-0.008133656509016873
FYGLVKDRFV	10	Unmodified	_FYGLVKDRFV_					0	0	0			REV__ENSG00000213199|ENST00000349064|ASIC3	REV__ENSG00000213199|ENST00000349064|ASIC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3477172851562	2	622.345323	1242.67609	0.37027	0.00023043	2.6257	0.0016341	2.996	0.0018645	622.3469704547435	83.065	0.49976	83.045	82.842	83.342	-0.020584					30	19	2	0	0	0	0.39935	1	21722	21722		3.5965	0.31518	1	126630	+		10330	19035	5826	5826	13336	13336					0.06446266811121859
FYGNVSRF	8	Unmodified	_FYGNVSRF_					0	0	0		ENSG00000181090|ENST00000460843|EHMT1;ENST00000475704.2_1_9:140728608-140729402:+|nuORF;ENST00000475564.5_1_9:140711834-140729402:+|nuORF;ENST00000494249.5_1_9:140710377-140729402:+|nuORF	ENSG00000181090|ENST00000460843|EHMT1	ENSG00000181090|ENST00000460843|EHMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.78497314453125	2	495.245609	988.476666	0.49123	0.00024328	0.034164	1.692E-05	0.5254	0.0002602	495.2453880433628	43.548	0.64718	43.625	43.401	44.048	0.077515					44	23	3	0	0	0	0.24708	1	9587	9587		45.7	21.026	1	354860			10331	7223	5827	5827	13337	13337					-0.018033684167676256
FYGNVSRF	8	Unmodified	_FYGNVSRF_					0	0	0		ENSG00000181090|ENST00000460843|EHMT1;ENST00000475704.2_1_9:140728608-140729402:+|nuORF;ENST00000475564.5_1_9:140711834-140729402:+|nuORF;ENST00000494249.5_1_9:140710377-140729402:+|nuORF	ENSG00000181090|ENST00000460843|EHMT1	ENSG00000181090|ENST00000460843|EHMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.784912109375	2	495.245609	988.476666	0.45605	0.00022585	0.074335	3.6814E-05	0.53038	0.00026267	495.2455149268903	43.542	0.53554	43.626	43.356	43.891	0.083996					41	19	3	0	0	0	0.18485	1	9569	9569		65.235	38.894	1	395270			10332	7223	5827	5827	13338	13338					-0.018033684167676256
FYGQQSFLRT	10	Unmodified	_FYGQQSFLRT_					0	0	0			REV__ENSG00000114279|ENST00000445105|FGF12	REV__ENSG00000114279|ENST00000445105|FGF12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.8150634765625	2	623.814387	1245.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.26	1	112.24	111.74	112.74	-0.015625								0	0	0	0.38166	1	29201	29201		1.4819	0	1		+		10333	14829	5828	5828	13339	13339					0.0012391539198688406
FYGTFDVHL	9	Unmodified	_FYGTFDVHL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3052978515625	2	549.766374	1097.5182	0.44952	0.00024713	0.32743	0.00018001	0.77695	0.00042714	549.7666737628987	66.678	0.94525	66.678	66.453	67.398	0					71	32	4	0	0	0	0.0055862	1	16723	16723		97.075	78.94	1	1136100			10334	1368	5829	5829	13340	13340					-0.026662324480867028
FYGTFDVHL	9	Unmodified	_FYGTFDVHL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3052978515625	2	549.766374	1097.5182	0.48311	0.0002656	0.35035	0.00019261	0.83345	0.0004582	549.7666487836595	66.587	0.88726	66.671	66.415	67.302	0.083832					64	31	3	0	0	0	0.025459	1	16664	16664		77.984	54.836	1	1130600			10335	1368	5829	5829	13341	13341					-0.026662324480867028
FYGTFDVHL	9	Unmodified	_FYGTFDVHL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3051147460938	2	549.766374	1097.5182	0.313	0.00017208	0.58796	0.00032324	0.90096	0.00049532	549.7667446083896	66.727	0.90036	66.714	66.46	67.36	-0.013588					62	31	3	0	0	0	0.0088261	1	16695	16695		85.357	62.208	1	1001600			10336	1368	5829	5829	13342	13342					-0.026662324480867028
FYGVYEPVIC	10	Unmodified	_FYGVYEPVIC_					0	0	0		DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant;ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-3|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B	DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant	DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.806640625	2	595.283543	1188.55253	0.7015	0.00041759	0.40433	0.00024069	1.1058	0.00065828	595.2835661400137	66.07	0.3584	66.154	65.916	66.274	0.083824					19	12	3	0	0	0	0.31745	1	16447	16447		7.9102	1.187	1	199260			10337	262	5830	5830	13343	13343					-0.03420152351509387
FYGVYEPVIC	10	Unmodified	_FYGVYEPVIC_					0	0	0		DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant;ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-3|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B	DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant	DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	595.283543	1188.55253	0.66271	0.0003945	0.55461	0.00033015	1.2173	0.00072465	595.2834880844366	66.223	0.38535	66.223	66.068	66.453	0	0.034791	8.881E-05	NaN	7.9102	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167890			10338	262	5830	5830							-0.03420152351509387
FYHALPQN	8	Unmodified	_FYHALPQN_					0	0	0			REV__ENSG00000161714|ENST00000619929|PLCD3	REV__ENSG00000161714|ENST00000619929|PLCD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.78497314453125	2	495.245609	988.476666	0.34614	0.00017142	0.37426	0.00018535	0.7204	0.00035677	495.2457754296152	43.946	0.49513	43.946	43.681	44.176	0					30	17	2	0	0	0	0.34046	1	9641	9641		14.582	3.4672	1	370150	+		10339	16950	5831	5831	13344	13344					-0.018033684167676256
FYHDRFKVF	9	Unmodified	_FYHDRFKVF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000532107.2_1_14:51374946-51378571:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.217041015625	3	420.217102	1257.62948	-0.028709	-1.2064E-05	0.026073	1.0956E-05	-0.0026361	-1.1077E-06	420.21694211765885	44.221	1.0569	44.221	43.904	44.961	0					71	38	3	0	0	0	0.059067	1	9760	9760		49.527	41.083	1	623310			10340	1603	5832	5832	13345	13345					0.010968269798240726
FYHDRFKVF	9	Unmodified	_FYHDRFKVF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000532107.2_1_14:51374946-51378571:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.2169189453125	3	420.217102	1257.62948	0.088001	3.698E-05	0.092442	3.8846E-05	0.18044	7.5825E-05	420.21685679431556	43.798	1.0921	43.875	43.599	44.691	0.077518					69	40	3	0	0	0	0.10812	1	9657	9657		37.075	28.098	1	651800			10341	1603	5832	5832	13346	13346					0.010968269798240726
FYHDRFKVF	9	Unmodified	_FYHDRFKVF_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000532107.2_1_14:51374946-51378571:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2169494628906	3	420.217102	1257.62948	0.094737	3.981E-05	0.20236	8.5034E-05	0.29709	0.00012484	420.2169861622852	43.824	0.85638	43.908	43.684	44.54	0.083996					60	31	3	0	0	0	0.063898	1	9671	9671		47.732	31.993	1	915630			10342	1603	5832	5832	13347	13347					0.010968269798240726
FYHEAVVLF	9	Unmodified	_FYHEAVVLF_					0	0	0		ENST00000487623.1_1_2:74718721-74719901:+|nuORF;ENST00000464241.5_1_2:74710222-74719357:+|nuORF;ENSG00000115282|ENST00000233623|TTC31	ENST00000487623.1_1_2:74718721-74719901:+|nuORF	ENST00000487623.1_1_2:74718721-74719901:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.7925415039062	2	562.792392	1123.57023	0.042382	2.3852E-05	0.4988	0.00028072	0.54119	0.00030458	562.7925748756163	65.282	0.58334	65.282	64.934	65.518	0					64	20	4	0	0	0	0.079066	2	16251	16251;16294		42.095	22.838	1	2178100			10343	2629	5833	5833	13348;13349	13348					0.013389309656531623
FYHEAVVLF	9	Unmodified	_FYHEAVVLF_					0	0	0		ENST00000487623.1_1_2:74718721-74719901:+|nuORF;ENST00000464241.5_1_2:74710222-74719357:+|nuORF;ENSG00000115282|ENST00000233623|TTC31	ENST00000487623.1_1_2:74718721-74719901:+|nuORF	ENST00000487623.1_1_2:74718721-74719901:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.7923583984375	2	562.792392	1123.57023	-0.01781	-1.0023E-05	0.58732	0.00033054	0.56951	0.00032051	562.7925986772641	65.116	0.53246	65.205	64.958	65.491	0.088882					63	19	4	0	0	0	0.11517	2	16215	16215;16272		36.044	11.37	1	2304900			10344	2629	5833	5833	13350;13351	13350					0.013389309656531623
FYHEAVVLF	9	Unmodified	_FYHEAVVLF_					0	0	0		ENST00000487623.1_1_2:74718721-74719901:+|nuORF;ENST00000464241.5_1_2:74710222-74719357:+|nuORF;ENSG00000115282|ENST00000233623|TTC31	ENST00000487623.1_1_2:74718721-74719901:+|nuORF	ENST00000487623.1_1_2:74718721-74719901:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.7926025390625	2	562.792392	1123.57023	0.0002277	1.2815E-07	0.56416	0.00031751	0.56439	0.00031763	562.7926075038426	65.256	0.50816	65.245	64.996	65.504	-0.01133					58	18	4	0	0	0	0.12846	1	16238	16238		34.102	15.967	1	2325200			10345	2629	5833	5833	13352	13352					0.013389309656531623
FYHHQDQA	8	Unmodified	_FYHHQDQA_					0	0	0		ENST00000550937.5_1_12:69924712-69951593:+|nuORF	ENST00000550937.5_1_12:69924712-69951593:+|nuORF	ENST00000550937.5_1_12:69924712-69951593:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8065185546875	2	523.227948	1044.44134	0.16883	8.8335E-05	-2.0999	-0.0010987	-1.931	-0.0010104	523.7281408822237	14.413	0.14441	14.413	14.279	14.423	0					5	4	2	0	0	0	0.3439	1	711	711		2.8892	0.31174	1	11942			10346	11800	5834	5834	13353	13353					-0.079100309445721
FYHIRDDRF	9	Unmodified	_FYHIRDDRF_					0	0	0		nc|ENSG00000005469|Q9UKG9-3|CROT;ENSG00000005469|ENST00000331536|CROT	nc|ENSG00000005469|Q9UKG9-3|CROT	nc|ENSG00000005469|Q9UKG9-3|CROT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.5821838378906	3	423.543878	1267.60981	0.07568	3.2054E-05	0.80105	0.00033928	0.87673	0.00037133	423.54411945889296	37.309	0.40159	37.402	37.222	37.624	0.093014					18	14	2	0	0	0	0.25871	1	7667	7667		6.1918	0	1	96246			10347	336	5835	5835	13354	13354					-0.013295490309246816
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.8165893554688	2	647.816399	1293.61824	0.43951	0.00028472	0.24003	0.0001555	0.67954	0.00044022	647.8164997409291	52.195	1.1242	52.195	51.836	52.96	0					101	40	3	0	0	0	5.2996E-06	3	12241	12194;12241;12313		156.16	156.16	1	1971400			10348	4955	5836	5836	13355;13356;13357	13356					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.2135009765625	3	432.213358	1293.61824	-0.076552	-3.3087E-05	0.78395	0.00033883	0.70739	0.00030574	432.2134354940422	52.18	3.8591	52.18	50.978	54.837	0					269	142	3	0	0	0	0.048175	3	12228	12228;12272;12317		39.95	14.776	1	5769800			10349	4955	5836	5836	13358;13359;13360	13358					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.8167724609375	2	647.816399	1293.61824	0.40996	0.00026558	-0.57779	-0.0003743	-0.16783	-0.00010873	647.8164612801398	52.064	1.4586	52.115	51.729	53.187	0.050575					139	52	5	0	0	0	0.00014409	3	12221	12171;12221;12273		133.7	100.26	1	2795300			10350	4955	5836	5836	13361;13362;13363	13362					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.21356201171875	3	432.213358	1293.61824	0.018986	8.206E-06	0.47003	0.00020315	0.48902	0.00021136	432.2134171732965	52.064	2.4266	52.115	51.729	54.155	0.050575					263	89	5	0	0	0	0.06608	4	12201	12201;12243;12294;12356		34.402	27.629	1	6666900			10351	4955	5836	5836	13364;13365;13366;13367	13364					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.8167724609375	2	647.816399	1293.61824	0.21645	0.00014022	-0.19317	-0.00012514	0.023281	1.5082E-05	647.8165063640341	52.46	1.7425	52.459	52.06	53.803	-0.00081253					170	64	5	0	0	0	0.00014409	5	12312	12264;12312;12367;12415;12508		133.7	95.087	1	2823100			10352	4955	5836	5836	13368;13369;13370;13371;13372	13369					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.21337890625	3	432.213358	1293.61824	-0.15144	-6.5457E-05	0.55964	0.00024188	0.40819	0.00017643	432.21343341229897	52.487	2.5773	52.486	51.928	54.505	-0.00080872					293	94	5	0	0	0	0.055495	3	12341	12299;12341;12429		38.176	24.561	1	9558400			10353	4955	5836	5836	13373;13374;13375	13374					-0.016819951142906575
FYHLPSKKKY	10	Unmodified	_FYHLPSKKKY_					0	0	0		ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;PBRM1|p.V1336Sfs*48|1|0.44|ENSG00000163939|chr3:52563363-52563363|C/-|frameshift_variant;PBRM1|p.L1349Wfs*35|1|0.38|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;PBRM1|p.P1339Lfs*45|1|0.24|ENSG00000163939|chr3:52563353-52563353|G/-|frameshift_variant;PBRM1|p.Q1346Rfs*38|1|0.15|ENSG00000163939|chr3:52563332-52563332|T/-|frameshift_variant;PBRM1|p.D1403Lfs*18|1|0.2|ENSG00000163939|chr3:52561847-52561848|TC/-|frameshift_variant;PBRM1|p.P1491Rfs*48|1|0.62|ENSG00000163939|chr3:52554861-52554861|G/-|frameshift_variant;PBRM1|p.V1505Lfs*34|1|0.32|ENSG00000163939|chr3:52554823-52554823|G/-|frameshift_variant;PBRM1|p.P1534Hfs*5|1|0.44|ENSG00000163939|chr3:52554732-52554732|G/-|frameshift_variant;PBRM1|p.Q1511Sfs*28|1|0.49|ENSG00000163939|chr3:52554802-52554802|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.L1564Wfs*32|1|0.68|ENSG00000163939|chr3:52550627-52550627|A/-|frameshift_variant;PBRM1|p.F1594Lfs*2|1|0.68|ENSG00000163939|chr3:52550536-52550536|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-9|PBRM1;PBRM1|p.Q1560Nfs*37|1|0.46|ENSG00000163939|chr3:52550749-52550750|-/TT|frameshift_variant;PBRM1|p.S1607Qfs*5|1|0.34|ENSG00000163939|chr3:52550499-52550499|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;PBRM1|p.F1216Yfs*3|1|0.2|ENSG00000163939|chr3:52576585-52576586|-/AT|frameshift_variant;PBRM1|p.K1293Nfs*20|1|0.2|ENSG00000163939|chr3:52563490-52563490|T/-|frameshift_variant;PBRM1|p.V1235Cfs*34|1|0.23|ENSG00000163939|chr3:52564222-52564222|C/-|frameshift_variant;PBRM1|p.E1222Kfs*5|2|0.51|ENSG00000163939|chr3:52576568-52576568|C/-|frameshift_variant;PBRM1|p.E1214Rfs*6|1|0.35|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.I1197Ffs*21|1|0.4|ENSG00000163939|chr3:52576643-52576643|T/-|frameshift_variant;PBRM1|p.I1073Lfs*86|1|0.27|ENSG00000163939|chr3:52586595-52586595|T/-|frameshift_variant;PBRM1|p.M1038Sfs*121|1|0.03|ENSG00000163939|chr3:52587363-52587363|A/-|frameshift_variant;PBRM1|p.P1135Lfs*24|1|0.12|ENSG00000163939|chr3:52579183-52579183|G/-|frameshift_variant;PBRM1|p.N1126Gfs*15|1|0.24|ENSG00000163939|chr3:52586432-52586436|AAGTT/-|frameshift_variant;PBRM1|p.A1104Gfs*3|1|0.37|ENSG00000163939|chr3:52586501-52586502|-/C|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.4|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;PBRM1|p.L993Mfs*20|1|0.61|ENSG00000163939|chr3:52587496-52587499|ACAA/-|frameshift_variant;PBRM1|p.W992Mfs*12|1|0.27|ENSG00000163939|chr3:52587502-52587503|-/T|frameshift_variant;PBRM1|p.K909Nfs*6|1|0.29|ENSG00000163939|chr3:52603573-52603573|T/-|frameshift_variant;PBRM1|p.G1161Afs*57|1|0.31|ENSG00000163939|chr3:52579107-52579107|A/-|frameshift_variant;PBRM1|p.N832Ifs*23|1|0.36|ENSG00000163939|chr3:52609385-52609385|T/-|frameshift_variant;PBRM1|p.R836Lfs*12|1|0.26|ENSG00000163939|chr3:52609352-52609373|TGCTCTTGAAATAAATCAAGCC/-|frameshift_variant;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.Q869Sfs*6|1|0.26|ENSG00000163939|chr3:52603695-52603696|-/A|frameshift_variant;PBRM1|p.Y862*|1|0.5|ENSG00000163939|chr3:52603672-52603715|ACGAATTTTAATAAAAAACTGCTGAAGTTCTACTGCATCTTCAT/-|frameshift_variant;PBRM1|p.D748Mfs*27|2|0.36|ENSG00000163939|chr3:52609638-52609638|C/-|frameshift_variant;PBRM1|p.Y697*|1|0.43|ENSG00000163939|chr3:52609782-52609792|TAGTCAGATAG/-|frameshift_variant;PBRM1|p.N663Mfs*7|1|0.47|ENSG00000163939|chr3:52609892-52609892|T/-|frameshift_variant;PBRM1|p.K638Nfs*4|1|0.35|ENSG00000163939|chr3:52615361-52615361|T/-|frameshift_variant;PBRM1|p.E572*|1|0.4|ENSG00000163939|chr3:52617366-52617367|-/A|frameshift_variant;PBRM1|p.L448Wfs*5|1|0.32|ENSG00000163939|chr3:52628994-52628994|A/-|frameshift_variant;PBRM1|p.N517Hfs*15|1|0.6|ENSG00000163939|chr3:52617531-52617532|TC/-|frameshift_variant;PBRM1|p.I571Mfs*16|1|0.4|ENSG00000163939|chr3:52617367-52617367|A/-|frameshift_variant;PBRM1|p.Y600Ifs*42|1|0.42|ENSG00000163939|chr3:52617283-52617283|G/-|frameshift_variant;PBRM1|p.L617Ffs*25|1|0.47|ENSG00000163939|chr3:52615424-52615424|T/-|frameshift_variant	ENSG00000163939|ENST00000707071|PBRM1	ENSG00000163939|ENST00000707071|PBRM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2677001953125	3	437.580041	1309.71829	0.3652	0.0001598	-1.2684	-0.00055502	-0.90318	-0.00039521	437.57938100290596	47.752	1.5549	47.796	46.402	47.957	0.043324					99	56	2	0	0	0	0.31597	1	10785	10785		12.175	3.7304	1	761590			10354	5762	5837	5837	13376	13376					0.07582242219496038
FYHPGQEYN	9	Unmodified	_FYHPGQEYN_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.2728271484375	2	577.748713	1153.48287	0.13302	7.6852E-05	-0.1395	-8.0596E-05	-0.0064804	-3.744E-06	577.7487096641978	24.049	0.86923	24.049	23.616	24.486	0					59	29	3	0	0	0	0.25938	1	3690	3690		4.3292	4.3292	1	157650			10355	1678	5838	5838	13377	13377					-0.08772894975891177
FYHRRLVE	8	Unmodified	_FYHRRLVE_					0	0	0			REV__ENST00000523505.1_2_7:106300067-106300283:-|nuORF	REV__ENST00000523505.1_2_7:106300067-106300283:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3240356445312	2	560.306532	1118.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.906	1	76.906	76.406	77.406	0								0	0	0	0.33625	1	19825	19825		20.871	1.6142	1		+		10356	21932	5839	5839	13378	13378					0.04395673665612776
FYHRRLVE	8	Unmodified	_FYHRRLVE_					0	0	0			REV__ENST00000523505.1_2_7:106300067-106300283:-|nuORF	REV__ENST00000523505.1_2_7:106300067-106300283:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3241577148438	2	560.306532	1118.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.063	1	77.063	76.563	77.563	0								0	0	0	0.33625	1	19873	19873		20.871	0.41758	1		+		10357	21932	5839	5839	13379	13379					0.04395673665612776
FYHRRLVE	8	Unmodified	_FYHRRLVE_					0	0	0			REV__ENST00000523505.1_2_7:106300067-106300283:-|nuORF	REV__ENST00000523505.1_2_7:106300067-106300283:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3245239257812	2	560.306532	1118.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.039	1	77.095	76.595	77.595	0.055412								0	0	0	0.33625	1	19858	19858		20.871	0.41758	1		+		10358	21932	5839	5839	13380	13380					0.04395673665612776
FYIFTWSF	8	Unmodified	_FYIFTWSF_					0	0	0		nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2401733398438	2	555.768386	1109.52222	0.38032	0.00021137	-3.288	-0.0018274	-2.9077	-0.001616	555.7669529411406	62.859	0.3544	62.955	62.794	63.148	0.095726					23	12	3	0	0	0	0.32778	1	15512	15512		14.582	2.0501	1	200770			10359	6293	5840	5840	13381	13381					-0.028161429543843042
FYIILLFHLS	10	Unmodified	_FYIILLFHLS_					0	0	0			REV__nc|ENSG00000290724|O14609|XKRY	REV__nc|ENSG00000290724|O14609|XKRY	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3692016601562	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105	1	105	104.5	105.5	0.0018463								0	0	0	0.38126	1	27850	27850		1.6526	0	1		+		10360	23252	5841	5841	13382	13382					0.10020911993387926
FYIIQNKMVN	10	Unmodified	_FYIIQNKMVN_					0	0	0			REV__ENST00000530769.5_1_11:93466507-93466609:-|nuORF	REV__ENST00000530769.5_1_11:93466507-93466609:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.5581970214844	3	423.893519	1268.65873	-0.11055	-4.686E-05	-2.6171	-0.0011094	-2.7277	-0.0011563	423.89240402250914	46.617	0.21638	46.617	46.487	46.703	0					10	7	2	0	0	0	0.3179	1	10526	10526		8.9762	0.82072	1	109920	+		10361	22013	5842	5842	13383	13383					0.03514603213807277
FYIIRTKNS	9	Unmodified	_FYIIRTKNS_					0	0	0			REV__ENSG00000054803|ENST00000064571|CBLN4	REV__ENSG00000054803|ENST00000064571|CBLN4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.310791015625	2	571.321848	1140.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.009	1	87.096	86.596	87.596	0.08709								0	0	0	0.2362	1	22917	22917		10.824	1.4765	1		+		10362	13588	5843	5843	13384	13384					0.06445407260002867
FYINGQYQF	9	Unmodified	_FYINGQYQF_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.2771606445312	2	590.277106	1178.53966	0.21115	0.00012464	0.38866	0.00022942	0.59981	0.00035406	590.2773225118017	69.497	0.76592	69.497	69.257	70.023	0					60	27	3	0	0	0	0.0014051	1	17579	17579		117.6	60.127	1	563630			10363	1106	5844	5844	13385	13385					-0.042468474193810835
FYINGQYQF	9	Unmodified	_FYINGQYQF_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.2772827148438	2	590.277106	1178.53966	0.25132	0.00014835	-0.17183	-0.00010143	0.079498	4.6926E-05	590.2768810205724	69.44	0.86981	69.506	69.232	70.101	0.066048					62	30	3	0	0	0	0.0014051	1	17558	17558		117.6	50.255	1	406350			10364	1106	5844	5844	13386	13386					-0.042468474193810835
FYINGQYQF	9	Unmodified	_FYINGQYQF_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.2771606445312	2	590.277106	1178.53966	0.27397	0.00016172	-0.0059039	-3.485E-06	0.26806	0.00015823	590.2771443136177	69.523	0.81631	69.501	69.293	70.109	-0.022087					57	29	3	0	0	0	0.00033206	2	17560	17560;17574		131.3	73.826	1	530590			10365	1106	5844	5844	13387;13388	13387					-0.042468474193810835
FYINSGTLQF	10	Unmodified	_FYINSGTLQF_					0	0	0		ENSG00000118900|ENST00000262376|UBN1;nc|ENSG00000118900|Q9NPG3-2|UBN1;ENST00000587027.1_1_16:4909049-4918847:+|nuORF	ENSG00000118900|ENST00000262376|UBN1	ENSG00000118900|ENST00000262376|UBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.2982177734375	2	595.298039	1188.58152	0.88074	0.0005243	-0.34563	-0.00020575	0.53511	0.00031855	595.2976529217974	78.173	1.5104	78.173	77.93	79.441	0					121	59	4	0	0	0	2.1034E-20	4	20227	20180;20227;20280;20513		211.85	146.62	1	1802300			10366	2850	5845	5845	13389;13390;13391;13392	13390					-0.00522291730840152
FYINSGTLQF	10	Unmodified	_FYINSGTLQF_					0	0	0		ENSG00000118900|ENST00000262376|UBN1;nc|ENSG00000118900|Q9NPG3-2|UBN1;ENST00000587027.1_1_16:4909049-4918847:+|nuORF	ENSG00000118900|ENST00000262376|UBN1	ENSG00000118900|ENST00000262376|UBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.2982788085938	2	595.298039	1188.58152	0.78863	0.00046947	-0.25486	-0.00015172	0.53377	0.00031775	595.2976777293408	78.106	1.1896	78.164	77.927	79.117	0.058151					107	45	4	0	0	0	7.0748E-09	3	20208	20163;20208;20259		171.46	108.89	1	1697500			10367	2850	5845	5845	13393;13394;13395	13394					-0.00522291730840152
FYINSGTLQF	10	Unmodified	_FYINSGTLQF_					0	0	0		ENSG00000118900|ENST00000262376|UBN1;nc|ENSG00000118900|Q9NPG3-2|UBN1;ENST00000587027.1_1_16:4909049-4918847:+|nuORF	ENSG00000118900|ENST00000262376|UBN1	ENSG00000118900|ENST00000262376|UBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.2981567382812	2	595.298039	1188.58152	0.91557	0.00054504	-0.32487	-0.0001934	0.5907	0.00035164	595.2975866929075	78.218	1.1242	78.188	77.898	79.022	-0.030434					105	44	4	0	0	0	2.1034E-20	3	20228	20181;20228;20276		211.85	146.62	1	1728500			10368	2850	5845	5845	13396;13397;13398	13397					-0.00522291730840152
FYINTGTLQF	10	Unmodified	_FYINTGTLQF_					0	0	0		ENSG00000157741|ENST00000473989|UBN2;UBN2|p.D255Vfs*18|1|0.02|ENSG00000157741|chr7:139258586-139258587|-/GT|frameshift_variant;nc|ENSG00000157741|Q6ZU65-2|UBN2	ENSG00000157741|ENST00000473989|UBN2	ENSG00000157741|ENST00000473989|UBN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.30615234375	2	602.305864	1202.59717	0.45677	0.00027511	0.3764	0.00022671	0.83316	0.00050182	602.3057970807369	81.217	0.84058	81.217	80.979	81.82	0					86	36	4	0	0	0	3.3863E-05	4	21156	21110;21156;21200;21251		135.86	93.908	1	1086600			10369	5323	5846	5846	13399;13400;13401;13402	13400					0.0039799478618078865
FYINTGTLQF	10	Unmodified	_FYINTGTLQF_					0	0	0		ENSG00000157741|ENST00000473989|UBN2;UBN2|p.D255Vfs*18|1|0.02|ENSG00000157741|chr7:139258586-139258587|-/GT|frameshift_variant;nc|ENSG00000157741|Q6ZU65-2|UBN2	ENSG00000157741|ENST00000473989|UBN2	ENSG00000157741|ENST00000473989|UBN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.3062744140625	2	602.305864	1202.59717	0.2341	0.000141	0.51131	0.00030797	0.74541	0.00044897	602.305893757701	81.142	0.83244	81.208	80.961	81.793	0.065094					111	40	4	0	0	0	1.5574E-05	5	21107	21066;21107;21149;21199;21243		147.24	109.07	1	1190500			10370	5323	5846	5846	13403;13404;13405;13406;13407	13404					0.0039799478618078865
FYINTGTLQF	10	Unmodified	_FYINTGTLQF_					0	0	0		ENSG00000157741|ENST00000473989|UBN2;UBN2|p.D255Vfs*18|1|0.02|ENSG00000157741|chr7:139258586-139258587|-/GT|frameshift_variant;nc|ENSG00000157741|Q6ZU65-2|UBN2	ENSG00000157741|ENST00000473989|UBN2	ENSG00000157741|ENST00000473989|UBN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.30615234375	2	602.305864	1202.59717	0.36607	0.00022049	0.58344	0.00035141	0.94951	0.0005719	602.3059409161018	81.283	0.83903	81.259	80.992	81.831	-0.02404					99	36	4	0	0	0	1.5574E-05	5	21155	21114;21155;21195;21242;21283		147.24	105.29	1	1325500			10371	5323	5846	5846	13408;13409;13410;13411;13412	13409					0.0039799478618078865
FYIPPLATHTI	11	Unmodified	_FYIPPLATHTI_					0	0	0		nc|ENSG00000117335|P15529-2|CD46;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-13|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-15|CD46;ENST00000469535.5_1_1:207925470-207933074:+|nuORF	nc|ENSG00000117335|P15529-2|CD46	nc|ENSG00000117335|P15529-2|CD46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.8531494140625	2	636.852981	1271.69141	0.31205	0.00019873	0.071673	4.5645E-05	0.38372	0.00024437	636.8529681744616	70.039	0.90272	70.039	69.703	70.605	0					70	32	3	0	0	0	0.012097	2	17769	17713;17769		65.235	36.153	1	704250			10372	2789	5847	5847	13413;13414	13414					0.06643133608326934
FYIPPLATHTI	11	Unmodified	_FYIPPLATHTI_					0	0	0		nc|ENSG00000117335|P15529-2|CD46;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-13|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-15|CD46;ENST00000469535.5_1_1:207925470-207933074:+|nuORF	nc|ENSG00000117335|P15529-2|CD46	nc|ENSG00000117335|P15529-2|CD46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.3544311523438	2	636.852981	1271.69141	0.50969	0.0003246	-0.14039	-8.9405E-05	0.36931	0.00023519	636.8527513879436	70.019	1.0914	70.085	69.741	70.833	0.066048					71	38	3	0	0	0	0.03985	2	17700	17700;17749		56.177	23.391	1	693990			10373	2789	5847	5847	13415;13416	13415					0.06643133608326934
FYIPPLATHTI	11	Unmodified	_FYIPPLATHTI_					0	0	0		nc|ENSG00000117335|P15529-2|CD46;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-13|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-15|CD46;ENST00000469535.5_1_1:207925470-207933074:+|nuORF	nc|ENSG00000117335|P15529-2|CD46	nc|ENSG00000117335|P15529-2|CD46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.8532104492188	2	636.852981	1271.69141	0.60707	0.00038662	-0.11861	-7.5536E-05	0.48846	0.00031108	636.8527661609106	70.131	0.94147	70.109	69.701	70.642	-0.022087					67	33	3	0	0	0	0.010752	3	17768	17719;17768;17882		68.081	38.999	1	612500			10374	2789	5847	5847	13417;13418;13419	13418					0.06643133608326934
FYIRDYTLL	9	Unmodified	_FYIRDYTLL_					0	0	0		ENSG00000002933|ENST00000004103|TMEM176A;ENST00000462826.1_1_7:150499254-150499470:+|nuORF	ENSG00000002933|ENST00000004103|TMEM176A	ENSG00000002933|ENST00000004103|TMEM176A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.8258666992188	2	602.324057	1202.63356	0.41661	0.00025093	-0.17676	-0.00010647	0.23984	0.00014446	602.3239123075258	69.123	0.88763	69.123	68.872	69.76	0					65	31	3	0	0	0	0.04299	2	17454	17454;17503		55.503	19.376	1	628540			10375	299	5848	5848	13420;13421	13420					0.040348716828930264
FYIRDYTLL	9	Unmodified	_FYIRDYTLL_					0	0	0		ENSG00000002933|ENST00000004103|TMEM176A;ENST00000462826.1_1_7:150499254-150499470:+|nuORF	ENSG00000002933|ENST00000004103|TMEM176A	ENSG00000002933|ENST00000004103|TMEM176A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.32470703125	2	602.324057	1202.63356	0.56029	0.00033748	-0.27414	-0.00016512	0.28615	0.00017235	602.3239684528406	69.113	1.1223	69.185	68.905	70.027	0.071938					77	39	4	0	0	0	0.026579	1	17421	17421		61.602	19.762	1	621440			10376	299	5848	5848	13422	13422					0.040348716828930264
FYIRDYTLL	9	Unmodified	_FYIRDYTLL_					0	0	0		ENSG00000002933|ENST00000004103|TMEM176A;ENST00000462826.1_1_7:150499254-150499470:+|nuORF	ENSG00000002933|ENST00000004103|TMEM176A	ENSG00000002933|ENST00000004103|TMEM176A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3236083984375	2	602.324057	1202.63356	0.30578	0.00018418	-0.0076923	-4.6333E-06	0.29809	0.00017955	602.3240403674426	69.158	0.78099	69.139	68.895	69.676	-0.019157					57	27	3	0	0	0	0.04299	2	17427	17427;17480		55.503	13.663	1	573900			10377	299	5848	5848	13423;13424	13423					0.040348716828930264
FYISPVNKL	9	Unmodified	_FYISPVNKL_					0	0	0		nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8090209960938	2	540.808042	1079.60153	1.1913	0.00064425	0.93652	0.00050648	2.1278	0.0011507	540.808526526631	56.033	0.77042	56.033	55.758	56.528	0					53	27	3	0	0	0	0.0019475	1	13442	13442		110.67	59.045	1	2938400			10378	2023	5849	5849	13425	13425					0.06491503999745873
FYISPVNKL	9	Unmodified	_FYISPVNKL_					0	0	0		nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8094482421875	2	540.808042	1079.60153	0.97073	0.00052498	1.205	0.00065165	2.1757	0.0011766	540.8087980865013	55.992	1.017	56.063	55.777	56.794	0.070885					49	22	3	0	0	0	0.018449	1	13430	13430		66.457	42.436	1	2547600			10379	2023	5849	5849	13426	13426					0.06491503999745873
FYISPVNKL	9	Unmodified	_FYISPVNKL_					0	0	0		nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	540.808042	1079.60153	1.0956	0.0005925	0.7559	0.0004088	1.8515	0.0010013	540.8086302385249	56.125	0.68766	56.106	55.853	56.541	-0.019081	0.038444	-0.00021746	NaN	110.67	37	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2173200			10380	2023	5849	5849							0.06491503999745873
FYITKRKK	8	Unmodified	_FYITKRKK_					0	0	0		ENSG00000116824|ENST00000369478|CD2	ENSG00000116824|ENST00000369478|CD2	ENSG00000116824|ENST00000369478|CD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.336669921875	2	542.337301	1082.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.666	1	97.666	97.166	98.166	0								0	0	0	0.37664	1	26123	26123		2.5775	0	1				10381	2755	5850	5850	13427	13427					0.12202605364882402
FYITKRKK	8	Unmodified	_FYITKRKK_					0	0	0		ENSG00000116824|ENST00000369478|CD2	ENSG00000116824|ENST00000369478|CD2	ENSG00000116824|ENST00000369478|CD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3363037109375	2	542.337301	1082.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.879	1	96.95	96.45	97.45	0.070465								0	0	0	0.37664	1	25910	25910		2.5775	0	1				10382	2755	5850	5850	13428	13428					0.12202605364882402
FYITSRTQF	9	Unmodified	_FYITSRTQF_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000197122|ENST00000373578|SRC	ENSG00000197122|ENST00000373578|SRC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.7987060546875	2	581.798206	1161.58186	0.36571	0.00021277	0.19467	0.00011326	0.56038	0.00032603	581.7980865089371	51.509	1.2155	51.509	51.108	52.324	0					108	44	4	0	0	0	6.549E-06	4	11981	11981;12031;12074;12093		155.95	101.18	1	3052900			10383	7931	5851	5851	13429;13430;13431;13432	13429					0.007531279889917641
FYITSRTQF	9	Unmodified	_FYITSRTQF_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000197122|ENST00000373578|SRC	ENSG00000197122|ENST00000373578|SRC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7984008789062	2	581.798206	1161.58186	0.28452	0.00016553	0.17483	0.00010172	0.45935	0.00026725	581.7981528288248	51.477	1.0327	51.523	51.245	52.278	0.046574					96	37	4	0	0	0	8.0996E-05	3	11985	11985;12037;12069		143.91	91.641	1	3254700			10384	7931	5851	5851	13433;13434;13435	13433					0.007531279889917641
FYITSRTQF	9	Unmodified	_FYITSRTQF_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000197122|ENST00000373578|SRC	ENSG00000197122|ENST00000373578|SRC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.7986450195312	2	581.798206	1161.58186	0.2553	0.00014854	-0.064637	-3.7605E-05	0.19067	0.00011093	581.798126041936	51.624	1.1831	51.633	51.297	52.48	0.0095634					92	43	3	0	0	0	6.549E-06	3	12014	12014;12062;12122		155.95	99.777	1	2712400			10385	7931	5851	5851	13436;13437;13438	13436					0.007531279889917641
FYITYKPRRL	10	Unmodified	_FYITYKPRRL_					0	0	0			REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.91278076171875	3	452.931073	1355.77139	-0.11117	-5.0354E-05	-3.384	-0.0015327	-3.4952	-0.0015831	452.92936069799276	25.494	0.25148	25.438	25.341	25.592	-0.055931					11	8	2	0	0	0	0.32068	1	4069	4069		3.5871	1.5031	1	32889	+		10386	15818	5852	5852	13439	13439					0.10773620002169082
FYKDTYNK	8	Unmodified	_FYKDTYNK_					0	0	0		ENSG00000010278|ENST00000009180|CD9	ENSG00000010278|ENST00000009180|CD9	ENSG00000010278|ENST00000009180|CD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8186645507812	2	539.763832	1077.51311	0.64372	0.00034746	1.4603	0.00078824	2.1041	0.0011357	539.7646336678662	93.911	0.49995	93.91	93.676	94.176	-0.00051117					51	33	2	0	0	0	0.33993	1	25033	25033		16.942	3.0362	1	107600			10387	419	5853	5853	13440	13440					-0.02254536310738331
FYKGRWIF	8	Unmodified	_FYKGRWIF_					0	0	0			REV__ENST00000474154.5_1_2:37458848-37468954:+|nuORF	REV__ENST00000474154.5_1_2:37458848-37468954:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2634887695312	2	558.803094	1115.59164	0.25938	0.00014494	-3.3135	-0.0018516	-3.0541	-0.0017066	558.7997537186004	80.533	0.13356	80.506	80.439	80.573	-0.026825					6	4	2	0	0	0	0.34297	1	20918	20918		6.3541	2.0249	1	64573	+		10388	13325	5854	5854	13441	13441					0.03846360785041725
FYKHFPLLL	9	Unmodified	_FYKHFPLLL_					0	0	0			REV__ENST00000367688.3_1_1:174933997-174934066:+|nuORF	REV__ENST00000367688.3_1_1:174933997-174934066:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.342041015625	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.86	1	112.86	112.36	113.36	0								0	0	0	0.2672	1	29322	29322		0.52476	0	1		+		10389	20321	5855	5855	13442	13442					0.08828373650408139
FYKHQVVHTG	10	Unmodified	_FYKHQVVHTG_					0	0	0		ENSG00000204920|ENST00000270014|ZNF155;nc|ENSG00000204920|Q12901-2|ZNF155	ENSG00000204920|ENST00000270014|ZNF155	ENSG00000204920|ENST00000270014|ZNF155	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8472290039062	2	608.317097	1214.61964	0.6697	0.00040739	-0.2576	-0.0001567	0.4121	0.00025069	608.3168792628156	83.972	1.2129	83.972	82.95	84.163	0					95	47	3	0	0	0	0.31847	1	21927	21927		3.5965	0	1	696480			10390	8261	5856	5856	13443	13443					0.02091638974457055
FYKKVYRLAY	10	Unmodified	_FYKKVYRLAY_					0	0	0		ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.9137268066406	3	450.923807	1349.74959	0.20816	9.3864E-05	-1.183	-0.00053342	-0.97479	-0.00043956	450.9233223394209	28.863	1.1026	28.863	28.389	29.492	0					80	39	4	0	0	0	0.36368	1	5145	5145		10.151	1.8641	1	287150			10391	4258	5857	5857	13444	13444					0.08870815253635556
FYKRHNKF	8	Unmodified	_FYKRHNKF_					0	0	0			REV__ENST00000573951.1_1_16:3315704-3317325:+|nuORF	REV__ENST00000573951.1_1_16:3315704-3317325:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.2925415039062	2	570.309075	1138.6036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.081	1	79.081	78.581	79.581	0								0	0	0	0.35014	1	20491	20491		14.582	2.0501	1		+		10392	22428	5858	5858	13445	13445					0.039839775282189294
FYKRHNKF	8	Unmodified	_FYKRHNKF_					0	0	0			REV__ENST00000573951.1_1_16:3315704-3317325:+|nuORF	REV__ENST00000573951.1_1_16:3315704-3317325:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.7801513671875	2	570.309075	1138.6036	0.059468	3.3915E-05	3.0952	0.0017652	3.1547	0.0017991	570.3121226692666	73.416	0.60422	73.416	73.191	73.795	0					31	21	2	0	0	0	0.33245	1	18836	18836		19.439	3.5918	1	179040	+		10393	22428	5858	5858	13446	13446					0.039839775282189294
FYKRHNKF	8	Unmodified	_FYKRHNKF_					0	0	0			REV__ENST00000573951.1_1_16:3315704-3317325:+|nuORF	REV__ENST00000573951.1_1_16:3315704-3317325:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.7750854492188	2	570.309075	1138.6036	0.52295	0.00029824	4.1104	0.0023442	4.6334	0.0026425	570.3121681735781	83.365	0.31985	83.439	83.27	83.59	0.073097					18	11	2	0	0	0	0.34319	1	21776	21776		5.7604	2.4791	1	74312	+		10394	22428	5858	5858	13447	13447					0.039839775282189294
FYKRWPLF	8	Unmodified	_FYKRWPLF_					0	0	0			REV__ENST00000421556.5_1_11:64494482-64496427:-|nuORF	REV__ENST00000421556.5_1_11:64494482-64496427:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7872314453125	2	578.818744	1155.62294	0.27247	0.00015771	-3.7765	-0.0021859	-3.504	-0.0020282	578.8163118635943	70.161	0.13562	70.161	70.074	70.209	0					6	4	2	0	0	0	0.33995	1	17782	17782		15.768	6.4208	1	61971	+		10395	20869	5859	5859	13448	13448					0.0513493381911303
FYKVDNEDI	9	Unmodified	_FYKVDNEDI_					0	0	0			REV__ENSG00000137494|ENST00000533342|ANKRD42	REV__ENSG00000137494|ENST00000533342|ANKRD42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2549438476562	2	571.771854	1141.52915	0.47879	0.00027376	-0.84301	-0.00048201	-0.36421	-0.00020825	572.2724476232917	79.21	0.54071	79.181	78.954	79.495	-0.028923					37	22	2	0	0	0	0.2451	1	20466	20466		15.847	4.7327	1	102450	+		10396	15865	5860	5860	13449	13449					-0.03594874864461417
FYKVLSSIEQM	11	Unmodified	_FYKVLSSIEQM_					0	0	0			REV__ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	REV__ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.74505615234375	3	448.900451	1343.67952	-0.11852	-5.3204E-05	-0.49617	-0.00022273	-0.61469	-0.00027594	448.89993731822204	13.075	0.11244	13.075	12.977	13.09	0					5	3	2	0	0	0	0.3325	1	301	301		4.1166	0.52395	1	13913	+		10397	13117	5861	5861	13450	13450					0.021431488028383683
FYLCLLTY	8	Unmodified	_FYLCLLTY_					0	0	0			REV__ENST00000203630.9_2_12:6857197-6857296:-|nuORF	REV__ENST00000203630.9_2_12:6857197-6857296:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8159790039062	2	518.264622	1034.51469	0.56556	0.00029311	2.8451	0.0014745	3.4107	0.0017676	518.2661839654579	48.701	0.43787	48.745	48.497	48.935	0.044891					28	15	3	0	0	0	0.33245	1	11212	11212		19.439	1.2926	1	486150	+		10398	19396	5862	5862	13451	13451					-0.0011861854629842128
FYLEGGFSKF	10	Unmodified	_FYLEGGFSKF_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.7952270507812	2	597.795132	1193.57571	0.63044	0.00037687	-0.13813	-8.2575E-05	0.49231	0.0002943	597.7949408013293	66.284	1.415	66.284	66.035	67.45	0					124	49	4	0	0	0	6.6676E-05	1	16596	16596		143.91	92.279	1	3434700			10399	4228	5863	5863	13452	13452					-0.013333902425074484
FYLEGGFSKF	10	Unmodified	_FYLEGGFSKF_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.7952270507812	2	597.795132	1193.57571	0.64492	0.00038553	-0.1798	-0.00010748	0.46512	0.00027805	597.7949248344303	66.125	1.5514	66.209	65.942	67.493	0.083832					135	55	4	0	0	0	2.7564E-05	5	16536	16481;16490;16536;16588;16637		139.78	101.61	1	3516600			10400	4228	5863	5863	13453;13454;13455;13456;13457	13455					-0.013333902425074484
FYLEGGFSKF	10	Unmodified	_FYLEGGFSKF_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.2860107421875	2	597.795132	1193.57571	0.39587	0.00023665	0.072504	4.3343E-05	0.46837	0.00027999	597.7950856960495	66.266	1.2137	66.252	65.97	67.184	-0.013588					125	43	4	0	0	0	0.025736	1	16771	16771		65.474	48.361	1	3737700			10401	4228	5863	5863	13458	13458					-0.013333902425074484
FYLEISCKS	9	Unmodified	_FYLEISCKS_					0	0	0		ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7928466796875	2	545.267893	1088.52123	0.67946	0.00037049	-1.0058	-0.00054843	-0.32633	-0.00017794	545.2677082462536	68.255	0.14799	68.236	68.197	68.345	-0.019157					6	4	2	0	0	0	0.15943	1	17184	17184		39.95	3.8227	1	172210			10402	10810	5864	5864	13459	13459					-0.019487253855913877
FYLEISCKS	9	Unmodified	_FYLEISCKS_					0	0	0		ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7930908203125	2	545.267893	1088.52123	0.47901	0.00026119	-1.4955	-0.00081545	-1.0165	-0.00055426	545.2669622907706	67.635	0.98495	67.619	66.981	67.966	-0.016296					47	33	2	0	0	0	0.15943	1	17088	17088		39.95	3.8227	1	122430			10403	10810	5864	5864	13460	13460					-0.019487253855913877
FYLEQNLF	8	Unmodified	_FYLEQNLF_					0	0	0			REV__ENST00000370521.7_1_1:89279391-89287640:+|nuORF	REV__ENST00000370521.7_1_1:89279391-89287640:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2872314453125	2	537.26875	1072.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.473	1	70.448	69.948	70.948	-0.024872								0	0	0	0.33625	1	17849	17849		20.871	0.41758	1		+		10404	20381	5865	5865	13461	13461					-0.010413483053525852
FYLGLLWEV	9	Unmodified	_FYLGLLWEV_					0	0	0			REV__ENSG00000109084|ENST00000226230|TMEM97	REV__ENSG00000109084|ENST00000226230|TMEM97	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2926025390625	2	570.310418	1138.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.029	1	79.088	78.588	79.588	0.059616								0	0	0	0.19804	1	20463	20463		23.148	5.0134	1		+		10405	14627	5866	5866	13462	13462					0.0425238814250406
FYLKALDGF	9	Unmodified	_FYLKALDGF_					0	0	0		ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A;HIF1A|p.R754Vfs*2|1|0.13|ENSG00000100644|chr14:61745748-61745748|C/-|frameshift_variant	ENSG00000100644|ENST00000337138|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.287109375	2	537.286943	1072.55933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.352	1	70.413	69.913	70.913	0.060783								0	0	0	0.022673	1	17819	17819		69.105	12.928	1				10406	1620	5867	5867	13463	13463					0.0259552859138239
FYLLNVDNI	9	Unmodified	_FYLLNVDNI_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7962646484375	2	555.795132	1109.57571	0.54645	0.00030371	0.051553	2.8653E-05	0.598	0.00033237	555.7953972629809	84.633	1.2557	84.633	84.324	85.579	0					69	47	2	0	0	0	0.13748	1	22127	22127		32.786	14.651	1	687660			10407	768	5868	5868	13464	13464					0.025306097574684827
FYLLNVDNI	9	Unmodified	_FYLLNVDNI_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7967529296875	2	555.795132	1109.57571	0.46478	0.00025832	0.32667	0.00018156	0.79146	0.00043989	555.7955406096052	84.638	1.4884	84.625	84.207	85.695	-0.01284					100	59	3	0	0	0	0.088443	1	22114	22114		39.95	15.929	1	569290			10408	768	5868	5868	13465	13465					0.025306097574684827
FYLLNVDNI	9	Unmodified	_FYLLNVDNI_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	555.795132	1109.57571	0.5464	0.00030369	0.23151	0.00012867	0.77791	0.00043236	555.7954805303959	84.542	1.9536	84.623	84.205	86.158	0.080887	-0.0042953	1.886E-05	NaN	39.95	112	75	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	548580			10409	768	5868	5868							0.025306097574684827
FYLNIVAATQ	10	Unmodified	_FYLNIVAATQ_					0	0	0		ENST00000425339.2_1_4:57261520-57265668:-|nuORF	ENST00000425339.2_1_4:57261520-57265668:-|nuORF	ENST00000425339.2_1_4:57261520-57265668:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2921752929688	2	570.308406	1138.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.169	1	79.23	78.73	79.73	0.061417								0	0	0	0.35421	1	20506	20506		13.042	0.51092	1				10410	10405	5869	5869	13466	13466					0.03850298648808348
FYLNIVAATQ	10	Unmodified	_FYLNIVAATQ_					0	0	0		ENST00000425339.2_1_4:57261520-57265668:-|nuORF	ENST00000425339.2_1_4:57261520-57265668:-|nuORF	ENST00000425339.2_1_4:57261520-57265668:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.292236328125	2	570.308406	1138.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.309	1	79.37	78.87	79.87	0.061417								0	0	0	0.35421	1	20549	20549		13.042	0.51092	1				10411	10405	5869	5869	13467	13467					0.03850298648808348
FYLPHGLSI	9	Unmodified	_FYLPHGLSI_					0	0	0		nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;PAM|p.F927Lfs*11|1|0.07|ENSG00000145730|chr5:103028923-103028924|-/AAATGATAAAGTCAGAAGG|frameshift_variant;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM	nc|ENSG00000145730|P19021-2|PAM	nc|ENSG00000145730|P19021-2|PAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.78759765625	2	523.78711	1045.55967	0.5527	0.0002895	0.047307	2.4779E-05	0.60001	0.00031428	523.7870233088312	68.576	0.87631	68.576	68.381	69.257	0					60	31	3	0	0	0	0.00097449	2	17260	17260;17312		123.1	87.052	1	1271800			10412	4669	5870	5870	13468;13469	13468					0.038709483112370435
FYLPHGLSI	9	Unmodified	_FYLPHGLSI_					0	0	0		nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;PAM|p.F927Lfs*11|1|0.07|ENSG00000145730|chr5:103028923-103028924|-/AAATGATAAAGTCAGAAGG|frameshift_variant;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM	nc|ENSG00000145730|P19021-2|PAM	nc|ENSG00000145730|P19021-2|PAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.7869262695312	2	523.78711	1045.55967	0.41914	0.00021954	-0.025994	-1.3615E-05	0.39314	0.00020592	523.7870187083851	68.539	1.1042	68.611	68.33	69.434	0.071938					76	40	3	0	0	0	0.0030686	2	17238	17238;17287		101.72	65.678	1	1339400			10413	4669	5870	5870	13470;13471	13470					0.038709483112370435
FYLPHGLSI	9	Unmodified	_FYLPHGLSI_					0	0	0		nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;PAM|p.F927Lfs*11|1|0.07|ENSG00000145730|chr5:103028923-103028924|-/AAATGATAAAGTCAGAAGG|frameshift_variant;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM	nc|ENSG00000145730|P19021-2|PAM	nc|ENSG00000145730|P19021-2|PAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.7872924804688	2	523.78711	1045.55967	0.52741	0.00027625	-0.14114	-7.3929E-05	0.38627	0.00020232	523.7869760030516	68.619	0.95674	68.6	68.37	69.327	-0.01915					63	33	3	0	0	0	0.00097449	2	17277	17277;17328		123.1	84.945	1	1351900			10414	4669	5870	5870	13472;13473	13472					0.038709483112370435
FYLPSSPNL	9	Unmodified	_FYLPSSPNL_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2684936523438	2	519.26875	1036.52295	0.41942	0.00021779	0.3806	0.00019763	0.80002	0.00041542	519.2688115944566	70.829	0.58791	70.829	70.54	71.128	0					37	20	2	0	0	0	0.010453	2	17965	17965;18017		78.728	53.329	1	678850			10415	8172	5871	5871	13474;13475	13474					0.006146516946500924
FYLPSSPNL	9	Unmodified	_FYLPSSPNL_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2691040039062	2	519.26875	1036.52295	0.35179	0.00018267	1.135	0.00058937	1.4868	0.00077204	519.2688410577974	70.762	0.52251	70.822	70.546	71.069	0.060783					43	18	3	0	0	0	0.034444	1	17956	17956		58.679	31.795	1	644860			10416	8172	5871	5871	13476	13476					0.006146516946500924
FYLPSSPNL	9	Unmodified	_FYLPSSPNL_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2689208984375	2	519.26875	1036.52295	0.41622	0.00021613	0.42438	0.00022037	0.8406	0.0004365	519.2688628442672	70.851	0.49846	70.826	70.578	71.077	-0.024864					31	17	2	0	0	0	0.034444	2	17954	17954;18002		58.679	28.042	1	570150			10417	8172	5871	5871	13477;13478	13477					0.006146516946500924
FYLQSKVVRA	10	Unmodified	_FYLQSKVVRA_					0	0	0		nc|ENSG00000262246|P57737-3|CORO7;ENSG00000217930|ENST00000318059|PAM16;ENST00000573236.5_1_16:4390322-4393442:-|nuORF;ENST00000573450.5_1_16:4390322-4391533:-|nuORF	nc|ENSG00000262246|P57737-3|CORO7	nc|ENSG00000262246|P57737-3|CORO7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.3004150390625	2	605.850773	1209.68699	0.6946	0.00042082	-1.1706	-0.00070923	-0.47603	-0.0002884	605.8503133158666	44.387	0.26952	44.455	44.298	44.567	0.068569					11	9	2	0	0	0	0.3183	1	9842	9842		13.906	2.4113	1	108310			10418	12987	5872	5872	13479	13479					0.09053669185436775
FYLTREFL	8	Unmodified	_FYLTREFL_					0	0	0			REV__ENST00000360971.6_1_6:132211647-132211707:+|nuORF	REV__ENST00000360971.6_1_6:132211647-132211707:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3164672851562	2	544.792392	1087.57023	0.61321	0.00033407	0.41504	0.00022611	1.0282	0.00056018	545.2944193046636	91.343	0.53215	91.434	91.229	91.761	0.090668					67	40	2	0	0	0	0.32778	1	24252	24252		20.871	1.4322	1	144120	+		10419	20273	5873	5873	13480	13480					0.0299493096565584
FYLWTTAQF	9	Unmodified	_FYLWTTAQF_					0	0	0			REV__ENST00000305352.6_1_1:101706579-101706750:+|nuORF	REV__ENST00000305352.6_1_1:101706579-101706750:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.7711791992188	2	588.78985	1175.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.831	1	60.831	60.331	61.331	0								0	0	0	0.24311	1	14903	14903		8.5933	0.68312	1		+		10420	19850	5874	5874	13481	13481					-0.01561372897003821
FYMDTSHLF	9	Oxidation (M)	_FYM(Oxidation (M))DTSHLF_		FYM(1)DTSHLF		FYM(160)DTSHLF	0	0	1		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.7554321289062	2	588.755149	1175.49575	0.82057	0.00048311	-0.30248	-0.00017809	0.51809	0.00030503	588.7549302208595	56.034	1.6117	56.105	55.777	57.389	0.070885					116	59	2	0	0	0	4.4046E-07	6	13443	13399;13443;13495;13547;13602;13655		162.95	134.46	1	14701000			10421	12673	5875	5875	13482;13483;13484;13485;13486;13487	13483		971			-0.08498199908035531
FYMDTSHLF	9	Oxidation (M)	_FYM(Oxidation (M))DTSHLF_		FYM(1)DTSHLF		FYM(160)DTSHLF	0	0	1		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.7551879882812	2	588.755149	1175.49575	0.95684	0.00056335	-0.23932	-0.0001409	0.71752	0.00042245	588.7549871324765	56.255	1.7734	56.236	55.884	57.657	-0.019081					184	64	4	0	0	0	4.4046E-07	5	13623	13468;13520;13571;13623;13677		162.95	147.83	1	15054000			10422	12673	5875	5875	13488;13489;13490;13491;13492	13491		971			-0.08498199908035531
FYMDTSHLF	9	Oxidation (M)	_FYM(Oxidation (M))DTSHLF_					0	0	1		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	588.755149	1175.49575	0.9803	0.00057716	-0.53439	-0.00031463	0.44591	0.00026253	588.7548225209789	56.128	2.759	56.128	55.539	58.298	0	-0.027949	-0.00016727	NaN	162.95	222	100	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13673000			10423	12673	5875	5875				971			-0.08498199908035531
FYMINAVTL	9	Oxidation (M)	_FYM(Oxidation (M))INAVTL_		FYM(1)INAVTL		FYM(100)INAVTL	0	0	1		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2784423828125	2	544.27826	1086.54197	0.32968	0.00017943	0.38125	0.0002075	0.71092	0.00038694	544.2784908647906	73.446	0.77645	73.446	72.989	73.766	0					58	27	3	0	0	0	0.0033114	3	18746	18715;18746;18797		99.799	57.704	1	686350			10424	6167	5876	5876	13493;13494;13495	13494		724			0.002158649940838586
FYMINAVTL	9	Oxidation (M)	_FYM(Oxidation (M))INAVTL_		FYM(1)INAVTL		FYM(110)INAVTL	0	0	1		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.27880859375	2	544.27826	1086.54197	0.46281	0.0002519	0.16168	8.8001E-05	0.62449	0.0003399	544.2783652767206	73.385	0.71554	73.439	73.01	73.725	0.053833					60	25	4	0	0	0	0.0026202	1	18729	18729		111.29	62.941	1	731440			10425	6167	5876	5876	13496	13496		724			0.002158649940838586
FYMINAVTL	9	Oxidation (M)	_FYM(Oxidation (M))INAVTL_		FYM(1)INAVTL		FYM(100)INAVTL	0	0	1		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.279296875	2	544.27826	1086.54197	0.59583	0.0003243	-0.50203	-0.00027325	0.093796	5.1051E-05	544.2783996489893	73.49	0.92735	73.46	72.901	73.829	-0.029305					109	33	6	0	0	0	0.0057766	1	18748	18748		99.799	59.842	1	654370			10426	6167	5876	5876	13497	13497		724			0.002158649940838586
FYNIIKGLFI	10	Unmodified	_FYNIIKGLFI_					0	0	0			REV__nc|ENSG00000125257|O15439-3|ABCC4	REV__nc|ENSG00000125257|O15439-3|ABCC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9083251953125	3	409.909387	1226.70633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.755	1	16.641	16.141	17.141	-0.11434								0	0	0	0.36386	1	1425	1425		8.9762	3.1928	1		+		10427	15257	5877	5877	13498	13498					0.10204625476330875
FYNIIKGLFI	10	Unmodified	_FYNIIKGLFI_					0	0	0			REV__nc|ENSG00000125257|O15439-3|ABCC4	REV__nc|ENSG00000125257|O15439-3|ABCC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9080505371094	3	409.909387	1226.70633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.952	1	16.838	16.338	17.338	-0.11434								0	0	0	0.37048	1	1485	1485		6.1918	0.40842	1		+		10428	15257	5877	5877	13499	13499					0.10204625476330875
FYNKDSEGAL	10	Unmodified	_FYNKDSEGAL_					0	0	0		ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7953491210938	2	572.269478	1142.5244	0.10281	5.8836E-05	-0.64606	-0.00036972	-0.54324	-0.00031088	572.2690688755928	57.324	0.51492	57.306	57.091	57.606	-0.0172					33	18	2	0	0	0	0.31482	1	13773	13773		11.64	1.5664	1	701480			10429	7230	5878	5878	13500	13500					-0.04115759007231645
FYNKRTLTF	9	Unmodified	_FYNKRTLTF_					0	0	0		nc|ENSG00000180694|Q6YI46-4|TMEM64;ENSG00000180694|ENST00000458549|TMEM64;nc|ENSG00000180694|Q6YI46-2|TMEM64;nc|ENSG00000180694|Q6YI46-3|TMEM64	nc|ENSG00000180694|Q6YI46-4|TMEM64	nc|ENSG00000180694|Q6YI46-4|TMEM64	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.7789306640625	2	595.321848	1188.62914	0.44861	0.00026707	-0.13228	-7.8748E-05	0.31633	0.00018832	595.321720832131	39.519	0.38771	39.612	39.442	39.83	0.09267					24	13	2	0	0	0	0.152	1	8372	8372		43.982	14.141	1	219720			10430	7196	5879	5879	13501	13501					0.042374072599841384
FYNKRTLTF	9	Unmodified	_FYNKRTLTF_					0	0	0		nc|ENSG00000180694|Q6YI46-4|TMEM64;ENSG00000180694|ENST00000458549|TMEM64;nc|ENSG00000180694|Q6YI46-2|TMEM64;nc|ENSG00000180694|Q6YI46-3|TMEM64	nc|ENSG00000180694|Q6YI46-4|TMEM64	nc|ENSG00000180694|Q6YI46-4|TMEM64	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	595.321848	1188.62914	0.18071	0.00010758	0.094535	5.6279E-05	0.27524	0.00016386	595.321905387429	39.747	0.42839	39.747	39.595	40.024	0	0.070373	0.00023483	NaN	43.982	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201550			10431	7196	5879	5879							0.042374072599841384
FYNKRTLTF	9	Unmodified	_FYNKRTLTF_					0	0	0		nc|ENSG00000180694|Q6YI46-4|TMEM64;ENSG00000180694|ENST00000458549|TMEM64;nc|ENSG00000180694|Q6YI46-2|TMEM64;nc|ENSG00000180694|Q6YI46-3|TMEM64	nc|ENSG00000180694|Q6YI46-4|TMEM64	nc|ENSG00000180694|Q6YI46-4|TMEM64	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	595.321848	1188.62914	0.38527	0.00022936	-0.1874	-0.00011157	0.19787	0.0001178	595.3217182638688	39.572	0.35746	39.672	39.511	39.868	0.099403	-0.0051149	-0.00010086	NaN	43.982	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233920			10432	7196	5879	5879							0.042374072599841384
FYNPAVSRI	9	Unmodified	_FYNPAVSRI_					0	0	0		nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.348388671875	2	533.787641	1065.56073	0.74515	0.00039775	-0.28023	-0.00014958	0.46492	0.00024817	533.7869348164721	47.695	0.38308	47.695	47.44	47.823	0					31	13	3	0	0	0	0.24993	1	10829	10829		13.042	6.3193	1	439980			10433	487	5880	5880	13502	13502					0.030571626801247476
FYNPDVLSPEH	11	Unmodified	_FYNPDVLSPEH_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.87554931640625	3	439.875182	1316.60372	0.31001	0.00013636	0.049112	2.1603E-05	0.35912	0.00015797	439.8753370241611	50.248	1.2749	50.248	49.923	51.198	0					157	46	5	0	0	0	0.41517	1	11688	11688		9.2438	0	1	3433200			10434	2585	5881	5881	13503	13503					-0.04192112053101482
FYNSFLEQL	9	Unmodified	_FYNSFLEQL_					0	0	0		ENSG00000125821|ENST00000377452|DTD1;ENST00000494921.1_1_20:18568716-18611186:+|nuORF	ENSG00000125821|ENST00000377452|DTD1	ENSG00000125821|ENST00000377452|DTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.7847900390625	2	580.784764	1159.55498	0.27718	0.00016098	0.09646	5.6023E-05	0.37364	0.00021701	580.7845666060432	81.818	0.63614	81.818	81.53	82.166	0					51	24	3	0	0	0	0.0008224	3	21309	21287;21309;21355		125.04	56.236	1	576780			10435	3233	5882	5882	13504;13505;13506	13505					-0.018419806222027546
FYNSFLEQL	9	Unmodified	_FYNSFLEQL_					0	0	0		ENSG00000125821|ENST00000377452|DTD1;ENST00000494921.1_1_20:18568716-18611186:+|nuORF	ENSG00000125821|ENST00000377452|DTD1	ENSG00000125821|ENST00000377452|DTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.7847900390625	2	580.784764	1159.55498	0.086554	5.0269E-05	0.37756	0.00021928	0.46412	0.00026955	580.78490736742	81.707	0.68132	81.776	81.53	82.211	0.068993					59	29	3	0	0	0	0.00012746	2	21287	21287;21335		136.39	66.06	1	518380			10436	3233	5882	5882	13507;13508	13507					-0.018419806222027546
FYNSFLEQL	9	Unmodified	_FYNSFLEQL_					0	0	0		ENSG00000125821|ENST00000377452|DTD1;ENST00000494921.1_1_20:18568716-18611186:+|nuORF	ENSG00000125821|ENST00000377452|DTD1	ENSG00000125821|ENST00000377452|DTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.7848510742188	2	580.784764	1159.55498	0.32562	0.00018911	0.438	0.00025438	0.76362	0.0004435	580.7849705519332	81.806	0.87512	81.782	81.374	82.249	-0.02404					62	36	3	0	0	0	0.0013864	2	21324	21281;21324		117.84	47.506	1	647390			10437	3233	5882	5882	13509;13510	13510					-0.018419806222027546
FYNSGLLDTF	10	Unmodified	_FYNSGLLDTF_					0	0	0		ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.7825317382812	2	588.782222	1175.54989	0.6437	0.000379	0.33889	0.00019953	0.98259	0.00057853	588.7822868840176	78.75	1.1124	78.75	78.462	79.575	0					108	44	4	0	0	0	1.8151E-13	4	20395	20350;20395;20493;20512		181.69	103.54	1	1248500			10438	6386	5883	5883	13511;13512;13513;13514	13512					-0.03086284484834323
FYNSGLLDTF	10	Unmodified	_FYNSGLLDTF_					0	0	0		ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.7826538085938	2	588.782222	1175.54989	0.54146	0.0003188	0.26231	0.00015445	0.80378	0.00047325	588.7822909654183	78.687	1.0659	78.745	78.499	79.564	0.058151					111	45	4	0	0	0	9.4622E-09	4	20356	20320;20356;20406;20451		168.54	93.609	1	1117200			10439	6386	5883	5883	13515;13516;13517;13518	13516					-0.03086284484834323
FYNSGLLDTF	10	Unmodified	_FYNSGLLDTF_					0	0	0		ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	ENST00000475550.5_1_2:64069329-64114799:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.7826538085938	2	588.782222	1175.54989	0.69887	0.00041148	0.21485	0.0001265	0.91372	0.00053798	588.7822339941941	78.827	1.0393	78.797	78.48	79.519	-0.030434					103	42	3	0	0	0	2.3869E-20	5	20378	20351;20378;20426;20475;20523		209.87	138.74	1	1186600			10440	6386	5883	5883	13519;13520;13521;13522;13523	13520					-0.03086284484834323
FYNSNPNQSV	10	Unmodified	_FYNSNPNQSV_					0	0	0			REV__ENSG00000109323|ENST00000647097|MANBA	REV__ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.2659912109375	2	585.264727	1168.5149	0.58143	0.00034029	1.601	0.000937	2.1824	0.0012773	585.2653314698695	45.962	0.52792	45.962	45.694	46.222	0					43	18	3	0	0	0	0.29092	1	10322	10322		21.537	2.28	1	772920	+		10441	14636	5884	5884	13524	13524					-0.06261527292781466
FYNVVVENL	9	Unmodified	_FYNVVVENL_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7874755859375	2	548.787307	1095.56006	0.51098	0.00028042	0.84941	0.00046615	1.3604	0.00074656	548.7871624965499	72.558	0.83806	72.558	72.267	73.105	0					78	30	4	0	0	0	0.020591	1	18523	18523		87.258	37.704	1	1047300			10442	4660	5885	5885	13525	13525					0.016103232404248047
FYNVVVENL	9	Unmodified	_FYNVVVENL_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7874145507812	2	548.787307	1095.56006	0.62573	0.00034339	0.23059	0.00012654	0.85631	0.00046993	548.78708272446	72.519	0.95691	72.573	72.27	73.227	0.053841					69	34	3	0	0	0	0.0041491	1	18506	18506		93.166	47.466	1	1081000			10443	4660	5885	5885	13526	13526					0.016103232404248047
FYNVVVENL	9	Unmodified	_FYNVVVENL_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7874755859375	2	548.787307	1095.56006	0.60661	0.0003329	0.27093	0.00014868	0.87754	0.00048158	548.7871061235354	72.602	1.0111	72.573	72.304	73.315	-0.029305					81	35	3	0	0	0	0.013404	1	18534	18534		74.2	26.451	1	1090100			10444	4660	5885	5885	13527	13527					0.016103232404248047
FYPAIADLF	9	Unmodified	_FYPAIADLF_					0	0	0		ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7737426757812	2	528.773668	1055.53278	0.36213	0.00019149	0.080686	4.2665E-05	0.44282	0.00023415	528.7736114257111	93.92	1.6328	93.92	93.605	95.238	0					344	137	5	0	0	0	0.0036555	5	25054	24978;25017;25054;25092;25133		97.075	66.85	1	976040			10445	4405	5886	5886	13528;13529;13530;13531;13532	13530					0.00723839700026474
FYPAIADLF	9	Unmodified	_FYPAIADLF_					0	0	0		ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7738037109375	2	528.773668	1055.53278	0.35406	0.00018722	0.071224	3.7662E-05	0.42529	0.00022488	528.7736198647768	93.799	1.6339	93.886	93.46	95.093	0.08667					322	131	5	0	0	0	0.0030686	5	24977	24943;24977;25016;25057;25135		101.72	63.571	1	1505000			10446	4405	5886	5886	13533;13534;13535;13536;13537	13534					0.00723839700026474
FYPAIADLF	9	Unmodified	_FYPAIADLF_					0	0	0		ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7738647460938	2	528.773668	1055.53278	0.60151	0.00031806	-0.19934	-0.00010541	0.40216	0.00021265	528.7734915928049	93.882	1.3275	93.881	93.569	94.897	-0.00050354					287	107	4	0	0	0	0.0016131	6	25011	24973;25011;25052;25063;25092;25134		114.94	76.793	1	1567700			10447	4405	5886	5886	13538;13539;13540;13541;13542;13543	13539					0.00723839700026474
FYPELLGL	8	Unmodified	_FYPELLGL_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.2630920410156	2	476.262936	950.51132	0.33777	0.00016087	0.55741	0.00026547	0.89517	0.00042634	476.26293849919443	86.193	0.8029	86.193	85.846	86.649	0					74	31	3	0	0	0	0.41097	2	22641	22641;22686		18.135	0	1	410760	+		10448	15599	5887	5887	13544;13545	13544					0.03408454671330219
FYPELLGL	8	Unmodified	_FYPELLGL_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.2630310058594	2	476.262936	950.51132	0.35601	0.00016955	0.58129	0.00027685	0.9373	0.0004464	476.2629603559524	86.064	0.71303	86.148	85.914	86.627	0.084251					72	27	3	0	0	0	0.41097	1	22625	22625		18.135	0	1	424560	+		10449	15599	5887	5887	13546	13546					0.03408454671330219
FYPELLGL	8	Unmodified	_FYPELLGL_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.26287841796875	2	476.262936	950.51132	0.41921	0.00019965	0.50048	0.00023836	0.91968	0.00043801	476.26287448658394	86.14	0.87083	86.131	85.873	86.744	-0.0090103					85	33	3	0	0	0	0.41097	1	22643	22643		18.135	0	1	479520	+		10450	15599	5887	5887	13547	13547					0.03408454671330219
FYPFFLFL	8	Unmodified	_FYPFFLFL_					0	0	0		ENST00000262646.11_1_8:61534433-61534553:+|nuORF	ENST00000262646.11_1_8:61534433-61534553:+|nuORF	ENST00000262646.11_1_8:61534433-61534553:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.291015625	2	547.291497	1092.56844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.977	1	12.877	12.377	13.377	-0.099291								0	0	0	0.37595	1	289	289		2.8892	0	1				10451	8987	5888	5888	13548	13548					0.025859219477069928
FYPKMLLID	9	Unmodified	_FYPKMLLID_					0	0	0			REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	REV__nc|ENSG00000140995|Q6ZN54-4|DEF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.7800903320312	2	570.312103	1138.60965	0.2681	0.0001529	-3.214	-0.001833	-2.9459	-0.0016801	570.3104101144255	73.804	0.62255	73.856	73.524	74.146	0.052361					27	21	2	0	0	0	0.2451	1	18823	18823		15.847	6.4997	1	188110	+		10452	16061	5889	5889	13549	13549					0.04589314924874088
FYPPKVELF	9	Unmodified	_FYPPKVELF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3114013671875	2	570.310418	1138.60628	0.24536	0.00013993	0.61658	0.00035164	0.86195	0.00049158	570.3109576696306	67.86	3.2532	67.86	67.048	70.301	0					367	117	5	0	0	0	0.014206	6	17045	16902;16953;16997;17045;17094;17207		72.968	52.553	1	28744000			10453	3349	5890	5890	13550;13551;13552;13553;13554;13555	13553					0.0425238814250406
FYPPKVELF	9	Unmodified	_FYPPKVELF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.310791015625	2	570.310418	1138.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.998	1	71.998	71.498	72.498	0								0	0	0	0.17427	1	18331	18331		29.082	13.234	1				10454	3349	5890	5890	13556	13556					0.0425238814250406
FYPPKVELF	9	Unmodified	_FYPPKVELF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.2924194335938	2	570.310418	1138.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.217	1	79.217	78.717	79.717	0								0	0	0	0.23091	1	20533	20533		12.532	0	1				10455	3349	5890	5890	13557	13557					0.0425238814250406
FYPPKVELF	9	Unmodified	_FYPPKVELF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.2925415039062	2	570.310418	1138.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.365	1	79.365	78.865	79.865	0								0	0	0	0.23091	1	20577	20577		12.532	0	1				10456	3349	5890	5890	13558	13558					0.0425238814250406
FYPPKVELF	9	Unmodified	_FYPPKVELF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3112182617188	2	570.310418	1138.60628	0.46554	0.0002655	0.35304	0.00020134	0.81858	0.00046684	570.3108282360495	67.725	3.3318	67.803	67.012	70.344	0.078041					377	119	5	0	0	0	0.014206	8	17001	16858;16865;16907;16950;17001;17047;17098;17148		72.968	54.833	1	26047000			10457	3349	5890	5890	13559;13560;13561;13562;13563;13564;13565;13566	13563					0.0425238814250406
FYPPKVELF	9	Unmodified	_FYPPKVELF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2930908203125	2	570.310418	1138.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.456	1	79.517	79.017	80.017	0.061417								0	0	0	0.23091	1	20594	20594		12.532	0	1				10458	3349	5890	5890	13567	13567					0.0425238814250406
FYPPKVELF	9	Unmodified	_FYPPKVELF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.311279296875	2	570.310418	1138.60628	0.21714	0.00012384	0.61436	0.00035038	0.8315	0.00047421	570.3109636754849	67.868	3.2447	67.851	67.009	70.254	-0.016296					336	115	5	0	0	0	0.0079761	5	17030	16889;16936;16980;17030;17078		82.529	60.783	1	29726000			10459	3349	5890	5890	13568;13569;13570;13571;13572	13571					0.0425238814250406
FYPPKVELF	9	Unmodified	_FYPPKVELF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.7727661132812	2	570.310418	1138.60628	0.22826	0.00013018	-1.2337	-0.00070357	-1.0054	-0.0005734	570.3101388975638	76.017	0.25886	75.986	75.904	76.163	-0.031479					17	8	3	0	0	0	0.21303	1	19522	19522		21.747	6.9084	1	134770			10460	3349	5890	5890	13573	13573					0.0425238814250406
FYPPKVELF	9	Unmodified	_FYPPKVELF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.309326171875	2	570.310418	1138.60628	0.32723	0.00018662	-1.1538	-0.00065804	-0.82659	-0.00047141	570.3097701003597	70.81	1.3503	70.785	70.079	71.429	-0.024872					98	48	3	0	0	0	0.22674	1	18012	18012		22.736	5.794	1	573630			10461	3349	5890	5890	13574	13574					0.0425238814250406
FYPQIINTF	9	Unmodified	_FYPQIINTF_					0	0	0		nc|ENSG00000091656|Q86UP3-3|ZFHX4;ENST00000458716.2_1_8:77616323-77620415:+|nuORF;ZFHX4|p.K2606Nfs*3|1|0.19|ENSG00000091656|chr8:76854737-76854737|A/-|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4	nc|ENSG00000091656|Q86UP3-3|ZFHX4	nc|ENSG00000091656|Q86UP3-3|ZFHX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7723999023438	2	571.797675	1141.5808	0.21747	0.00012435	-0.53044	-0.0003033	-0.31297	-0.00017896	571.7970672319508	80.177	0.3654	80.177	79.981	80.346	0					15	12	2	0	0	0	0.24848	1	20832	20832		13.906	0	1	109090			10462	10713	5891	5891	13575	13575					0.015669136200813227
FYPQIINTF	9	Unmodified	_FYPQIINTF_					0	0	0		nc|ENSG00000091656|Q86UP3-3|ZFHX4;ENST00000458716.2_1_8:77616323-77620415:+|nuORF;ZFHX4|p.K2606Nfs*3|1|0.19|ENSG00000091656|chr8:76854737-76854737|A/-|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4	nc|ENSG00000091656|Q86UP3-3|ZFHX4	nc|ENSG00000091656|Q86UP3-3|ZFHX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.7725219726562	2	571.797675	1141.5808	0.30672	0.00017538	-0.88945	-0.00050858	-0.58272	-0.0003332	571.7970840146162	80.146	0.41886	80.211	79.951	80.37	0.065102					20	15	2	0	0	0	0.24848	1	20796	20796		13.906	3.0821	1	92682			10463	10713	5891	5891	13576	13576					0.015669136200813227
FYPVSSALL	9	Unmodified	_FYPVSSALL_					0	0	0			REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A	REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.774658203125	2	498.773668	995.532783	0.69956	0.00034892	1.085	0.00054118	1.7846	0.0008901	498.77405299623103	74.504	0.86805	74.504	74.286	75.154	0					62	30	3	0	0	0	0.19839	1	19081	19081		28.487	0	1	1075600	+		10464	13920	5892	5892	13577	13577					0.03483839700038516
FYPVSSALL	9	Unmodified	_FYPVSSALL_					0	0	0			REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A	REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7745666503906	2	498.773668	995.532783	0.35485	0.00017699	1.5165	0.00075637	1.8713	0.00093336	498.7742002144892	74.494	0.70215	74.547	74.296	74.998	0.052361					62	24	3	0	0	0	0.1669	1	19056	19056		28.487	0	1	1073000	+		10465	13920	5892	5892	13578	13578					0.03483839700038516
FYPYGLQTF	9	Unmodified	_FYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.277099609375	2	568.276575	1134.5386	0.40906	0.00023246	-0.23699	-0.00013467	0.17207	9.7784E-05	568.2766951856252	76.972	3.0186	76.972	76.448	79.467	0					386	115	6	0	0	0	4.3382E-05	8	19801	19757;19801;19846;19895;19938;20125;20427;20469		149.99	100.06	1	13830000			10466	1551	5893	5893	13579;13580;13581;13582;13583;13584;13585;13586	13580					-0.02329061788304898
FYPYGLQTF	9	Unmodified	_FYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2771606445312	2	568.276575	1134.5386	0.42159	0.00023958	-0.11881	-6.7515E-05	0.30278	0.00017206	568.2766892171402	76.866	4.3139	76.921	76.424	80.738	0.054413					397	165	5	0	0	0	4.3382E-05	8	19776	19735;19776;19821;19871;19912;19947;20405;20447		149.99	83.538	1	13921000			10467	1551	5893	5893	13587;13588;13589;13590;13591;13592;13593;13594	13588					-0.02329061788304898
FYPYGLQTF	9	Unmodified	_FYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.27734375	2	568.276575	1134.5386	0.55573	0.00031581	-0.25939	-0.0001474	0.29634	0.0001684	568.2766286075548	76.982	4.4405	76.951	76.423	80.863	-0.031334					413	167	6	0	0	0	4.0037E-07	8	19851	19762;19804;19851;19892;19934;20299;20427;20472		164.52	89.049	1	15670000			10468	1551	5893	5893	13595;13596;13597;13598;13599;13600;13601;13602	13597					-0.02329061788304898
FYPYGQYQF	9	Unmodified	_FYPYGQYQF_					0	0	0		ENST00000558180.2_1_16:54318400-54319510:-|nuORF;ENSG00000177508|ENST00000329734|IRX3	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	ENST00000558180.2_1_16:54318400-54319510:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3373413085938	2	606.771657	1211.52876	0.4712	0.00028591	-0.3456	-0.0002097	0.1256	7.6212E-05	606.7715741442008	70.523	0.96446	70.523	69.999	70.963	0					65	34	2	0	0	0	0.25441	1	17820	17820		10.074	2.7847	1	222720			10469	6993	5894	5894	13603	13603					-0.06854249793673262
FYQCEVVRL	9	Unmodified	_FYQCEVVRL_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.S1016Gfs*8|1|0.03|ENSG00000066135|chr1:43704103-43704104|-/GGAAGGAG|frameshift_variant;nc|ENSG00000066135|O75164-2|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.2819213867188	2	578.794609	1155.57467	0.51515	0.00029816	0.33321	0.00019286	0.84835	0.00049102	578.795038372097	76.903	0.44238	76.871	76.682	77.125	-0.031334					31	16	3	0	0	0	0.24848	1	19863	19863		13.906	3.0821	1	191390			10470	833	5895	5895	13604	13604					0.003100721169175813
FYQEHPDL	8	Unmodified	_FYQEHPDL_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000585223.1_1_17:62500698-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.740478515625	2	524.740357	1047.46616	0.19025	9.983E-05	0.067624	3.5485E-05	0.25787	0.00013531	524.7402706645925	39.644	0.70244	39.644	39.348	40.05	0					61	25	3	0	0	0	0.055175	2	8362	8362;8413		75.761	42.975	1	631530			10471	2205	5896	5896	13605;13606	13605					-0.055673958618626784
FYQEHPDL	8	Unmodified	_FYQEHPDL_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000585223.1_1_17:62500698-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7405395507812	2	524.740357	1047.46616	0.37455	0.00019654	0.024621	1.292E-05	0.39917	0.00020946	524.7402570475576	39.471	0.57923	39.564	39.278	39.858	0.09267					46	20	3	0	0	0	0.074763	2	8310	8310;8360		66.457	33.671	1	929350			10472	2205	5896	5896	13607;13608	13607					-0.055673958618626784
FYQEHPDL	8	Unmodified	_FYQEHPDL_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000585223.1_1_17:62500698-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7404174804688	2	524.740357	1047.46616	0.50239	0.00026363	-0.098691	-5.1787E-05	0.4037	0.00021184	524.7402212201824	39.447	0.60278	39.547	39.292	39.894	0.099407					49	21	3	0	0	0	0.055175	2	8296	8296;8346		75.761	36.319	1	915490			10473	2205	5896	5896	13609;13610	13609					-0.055673958618626784
FYQELCDL	8	Unmodified	_FYQELCDL_					0	0	0		ENST00000493134.1_1_3:44840780-44854740:+|nuORF	ENST00000493134.1_1_3:44840780-44854740:+|nuORF	ENST00000493134.1_1_3:44840780-44854740:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2737426757812	2	515.731143	1029.44773	0.288	0.00014853	-0.18263	-9.4186E-05	0.10538	5.4346E-05	515.7309816191969	58.137	0.49531	58.222	57.945	58.44	0.085621					25	17	2	0	0	0	0.32886	1	14034	14034		10.824	0	1	151610			10474	11197	5897	5897	13611	13611					-0.06581273828078338
FYQIMTMRRQ	10	Unmodified	_FYQIMTMRRQ_					0	0	0		nc|ENSG00000144061|O15259-3|NPHP1;ENSG00000144061|ENST00000445609|NPHP1;nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1;ENST00000493051.1_1_2:110886666-110902094:-|nuORF	nc|ENSG00000144061|O15259-3|NPHP1	nc|ENSG00000144061|O15259-3|NPHP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7642822265625	3	458.565408	1372.6744	-0.24482	-0.00011226	3.3462	0.0015345	3.1014	0.0014222	458.5673078967119	13.781	0.13354	13.781	13.714	13.847	0					5	4	2	0	0	0	0.32143	1	518	518		1.5923	0.52082	1	4979.1			10475	4564	5898	5898	13612	13612					0.0029656645922386815
FYQPKIQQF	9	Unmodified	_FYQPKIQQF_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.8154907226562	2	599.816399	1197.61824	0.44787	0.00026864	-0.42561	-0.00025529	0.022262	1.3353E-05	599.8160912761099	53.193	0.43232	53.183	52.92	53.353	-0.0096054					28	15	2	0	0	0	0.019896	1	12568	12568		64.236	45.863	1	522520			10476	4314	5899	5899	13613	13613					0.027340048857013244
FYQPKIQQF	9	Unmodified	_FYQPKIQQF_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	599.816399	1197.61824	0.55531	0.00033308	-0.68041	-0.00040812	-0.12511	-7.5041E-05	599.8161259021499	53.04	0.40378	53.04	52.797	53.201	0	-0.035414	-0.00025541	NaN	64.236	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	627240			10477	4314	5899	5899							0.027340048857013244
FYQPKIQQF	9	Unmodified	_FYQPKIQQF_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	599.816399	1197.61824	0.7979	0.00047859	-0.44156	-0.00026486	0.35634	0.00021374	599.8162081919687	52.946	0.50401	53.002	52.717	53.221	0.056255	-0.073092	3.1121E-05	NaN	64.236	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	646510			10478	4314	5899	5899							0.027340048857013244
FYQREFDFF	9	Unmodified	_FYQREFDFF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000466772.5_1_22:21065465-21081626:-|nuORF;ENST00000492581.5_1_22:21067427-21075805:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.7960815429688	2	649.795663	1297.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.909	1	70.909	70.409	71.409	0								0	0	0	0.0015538	1	17996	17996		93.166	56.66	1				10479	8538	5900	5900	13614	13614					-0.0601117587364115
FYQREFDFF	9	Unmodified	_FYQREFDFF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000466772.5_1_22:21065465-21081626:-|nuORF;ENST00000492581.5_1_22:21067427-21075805:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.7959594726562	2	649.795663	1297.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.851	1	70.912	70.412	71.412	0.060783								0	0	0	0.0015538	1	17972	17972		93.166	66.898	1				10480	8538	5900	5900	13615	13615					-0.0601117587364115
FYQREFDFF	9	Unmodified	_FYQREFDFF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000466772.5_1_22:21065465-21081626:-|nuORF;ENST00000492581.5_1_22:21067427-21075805:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.7947998046875	2	649.795663	1297.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.102	1	71.163	70.663	71.663	0.060783								0	0	0	0.094536	1	18050	18050		47.594	31.747	1				10481	8538	5900	5900	13616	13616					-0.0601117587364115
FYQREFDFF	9	Unmodified	_FYQREFDFF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000466772.5_1_22:21065465-21081626:-|nuORF;ENST00000492581.5_1_22:21067427-21075805:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.7959594726562	2	649.795663	1297.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.917	1	70.892	70.392	71.392	-0.024872								0	0	0	0.0040423	1	17986	17986		89.401	41.652	1				10482	8538	5900	5900	13617	13617					-0.0601117587364115
FYQREFDFF	9	Unmodified	_FYQREFDFF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000466772.5_1_22:21065465-21081626:-|nuORF;ENST00000492581.5_1_22:21067427-21075805:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.7952880859375	2	649.795663	1297.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.158	1	71.133	70.633	71.633	-0.024872								0	0	0	0.067964	1	18060	18060		55.503	40.664	1				10483	8538	5900	5900	13618	13618					-0.0601117587364115
FYQRFPLSF	9	Unmodified	_FYQRFPLSF_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.8114624023438	2	602.811116	1203.60768	0.32018	0.00019301	-0.26836	-0.00016177	0.051821	3.1238E-05	602.8112115035186	69.581	1.3162	69.581	69.257	70.573	0					107	47	3	0	0	0	0.0073667	1	17555	17555		96.367	61.965	1	1654300			10484	3755	5901	5901	13619	13619					0.014020222312637998
FYQRFPLSF	9	Unmodified	_FYQRFPLSF_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8114013671875	2	602.811116	1203.60768	0.38312	0.00023095	-0.30932	-0.00018646	0.073793	4.4483E-05	602.8112541503344	69.575	1.3805	69.641	69.284	70.665	0.066048					116	48	4	0	0	0	0.003317	2	17599	17599;17653		99.755	70.674	1	1635300			10485	3755	5901	5901	13620;13621	13620					0.014020222312637998
FYQRFPLSF	9	Unmodified	_FYQRFPLSF_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8113403320312	2	602.811116	1203.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.583	1	70.559	70.059	71.059	-0.024872								0	0	0	0.22666	1	17883	17883		13.906	5.7505	1				10486	3755	5901	5901	13622	13622					0.014020222312637998
FYQRFPLSF	9	Unmodified	_FYQRFPLSF_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8114013671875	2	602.811116	1203.60768	0.27109	0.00016342	-0.13257	-7.9916E-05	0.13852	8.35E-05	602.8112954444028	69.623	1.2571	69.601	69.267	70.524	-0.022087					120	45	4	0	0	0	0.0073667	1	17559	17559		96.367	61.965	1	1787000			10487	3755	5901	5901	13623	13623					0.014020222312637998
FYQVAEYTF	9	Unmodified	_FYQVAEYTF_					0	0	0		nc|ENSG00000102032|P51606-3|RENBP;ENSG00000102032|ENST00000393700|RENBP;RENBP|p.L348P|1|0.72|ENSG00000102032|chrX:153940136-153940136|A/G|missense_variant	nc|ENSG00000102032|P51606-3|RENBP	nc|ENSG00000102032|P51606-3|RENBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2716674804688	2	584.27149	1166.52843	0.38624	0.00022567	-0.12654	-7.3931E-05	0.2597	0.00015174	584.2712470946933	71.981	0.65476	71.981	71.773	72.428	0					58	23	3	0	0	0	0.014206	2	18322	18322;18374		72.968	52.514	1	568950			10488	1738	5902	5902	13624;13625	13624					-0.0481766951352256
FYQVAEYTF	9	Unmodified	_FYQVAEYTF_					0	0	0		nc|ENSG00000102032|P51606-3|RENBP;ENSG00000102032|ENST00000393700|RENBP;RENBP|p.L348P|1|0.72|ENSG00000102032|chrX:153940136-153940136|A/G|missense_variant	nc|ENSG00000102032|P51606-3|RENBP	nc|ENSG00000102032|P51606-3|RENBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2716064453125	2	584.27149	1166.52843	0.37927	0.0002216	-0.15422	-9.0106E-05	0.22505	0.00013149	584.2712069375157	71.949	0.92567	72.006	71.732	72.658	0.056572					69	33	3	0	0	0	0.0079761	3	18309	18309;18360;18464		82.529	59.793	1	548920			10489	1738	5902	5902	13626;13627;13628	13626					-0.0481766951352256
FYQVAEYTF	9	Unmodified	_FYQVAEYTF_					0	0	0		nc|ENSG00000102032|P51606-3|RENBP;ENSG00000102032|ENST00000393700|RENBP;RENBP|p.L348P|1|0.72|ENSG00000102032|chrX:153940136-153940136|A/G|missense_variant	nc|ENSG00000102032|P51606-3|RENBP	nc|ENSG00000102032|P51606-3|RENBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.271240234375	2	584.27149	1166.52843	0.42515	0.0002484	-0.24482	-0.00014304	0.18033	0.00010536	584.2711342986612	72.095	0.75108	72.068	71.793	72.544	-0.027275					61	26	3	0	0	0	0.0079761	2	18355	18355;18442		82.529	54.901	1	662830			10490	1738	5902	5902	13629;13630	13629					-0.0481766951352256
FYQVAHQYL	9	Unmodified	_FYQVAHQYL_					0	0	0			REV__ENST00000591475.5_1_18:61064221-61089576:-|nuORF	REV__ENST00000591475.5_1_18:61064221-61089576:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.8053588867188	2	584.792924	1167.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.89	1	71.89	71.39	72.39	0								0	0	0	0.21726	1	18298	18298		16.942	0	1		+		10491	15046	5903	5903	13631	13631					-0.005788546654230231
FYRCFILTL	9	Unmodified	_FYRCFILTL_					0	0	0			REV__ENST00000476195.5_1_1:78050477-78050609:-|nuORF	REV__ENST00000476195.5_1_1:78050477-78050609:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.8055419921875	2	588.31772	1174.62089	0.40395	0.00023765	-0.25359	-0.00014919	0.15035	8.8456E-05	588.8180398339492	62.569	0.19219	62.666	62.546	62.738	0.096985					9	6	2	0	0	0	0.22188	1	15456	15456		20.454	4.6064	1	141170	+		10492	21417	5904	5904	13632	13632					0.04056137019028938
FYRRLLQM	8	Unmodified	_FYRRLLQM_					0	0	0		nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.320068359375	2	563.813136	1125.61172	0.35446	0.00019985	-4.3046	-0.002427	-3.9502	-0.0022272	563.809961776568	72.081	0.75584	72.053	71.873	72.629	-0.027275					41	26	3	0	0	0	0.31934	1	18306	18306		24.674	0	1	176300			10493	5975	5905	5905	13633	13633					0.05393788453329762
FYRSYFSQF	9	Unmodified	_FYRSYFSQF_					0	0	0		nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK	nc|ENSG00000168297|Q7Z7A4-3|PXK	nc|ENSG00000168297|Q7Z7A4-3|PXK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.7906494140625	2	622.790381	1243.56621	-0.055273	-3.4423E-05	0.47536	0.00029605	0.42009	0.00026163	622.7906111609489	59.972	0.6568	59.972	59.702	60.359	0					49	23	3	0	0	0	0.0023309	2	14613	14613;14661		107.56	78.482	1	880870			10494	6266	5906	5906	13634;13635	13634					-0.04583158528066633
FYRSYFSQF	9	Unmodified	_FYRSYFSQF_					0	0	0		nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK	nc|ENSG00000168297|Q7Z7A4-3|PXK	nc|ENSG00000168297|Q7Z7A4-3|PXK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.7906494140625	2	622.790381	1243.56621	-0.46452	-0.0002893	0.87969	0.00054786	0.41517	0.00025856	622.7909227289953	59.862	0.73459	59.957	59.661	60.395	0.095093					58	26	3	0	0	0	0.0040516	2	14561	14561;14610		93.938	64.098	1	604580			10495	6266	5906	5906	13636;13637	13636					-0.04583158528066633
FYRSYFSQF	9	Unmodified	_FYRSYFSQF_					0	0	0		nc|ENSG00000168297|Q7Z7A4-3|PXK;nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK	nc|ENSG00000168297|Q7Z7A4-3|PXK	nc|ENSG00000168297|Q7Z7A4-3|PXK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.790771484375	2	622.790381	1243.56621	0.041253	2.5692E-05	-0.14734	-9.1762E-05	-0.10609	-6.607E-05	622.7904603352665	60.003	0.78056	59.991	59.763	60.544	-0.011486					61	27	3	0	0	0	0.0040516	2	14648	14596;14648		93.938	64.098	1	1039400			10496	6266	5906	5906	13638;13639	13639					-0.04583158528066633
FYRVAGREFA	10	Unmodified	_FYRVAGREFA_					0	0	0		ENSG00000198113|ENST00000357503|TOR4A	ENSG00000198113|ENST00000357503|TOR4A	ENSG00000198113|ENST00000357503|TOR4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8470458984375	2	608.317097	1214.61964	0.62383	0.00037949	0.18284	0.00011123	0.80668	0.00049072	608.3172598662671	83.8	2.6947	83.877	83.162	85.856	0.077095					226	105	3	0	0	0	0.31889	1	22183	22183		6.2058	0.47393	1	584900			10497	8039	5907	5907	13640	13640					0.020916389744797925
FYSAYILF	8	Unmodified	_FYSAYILF_					0	0	0			REV__nc|ENSG00000117479|O60779-2|SLC19A2	REV__nc|ENSG00000117479|O60779-2|SLC19A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2799072265625	2	512.262936	1022.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.592	1	76.56	76.06	77.06	-0.031487								0	0	0	0.31676	1	19719	19719		26.341	5.4701	1		+		10498	14970	5908	5908	13641	13641					0.0009645467132486374
FYSFFFMYSH	10	Unmodified	_FYSFFFMYSH_					0	0	0		ENST00000381118.7_1_5:60169931-60170042:-|nuORF	ENST00000381118.7_1_5:60169931-60170042:-|nuORF	ENST00000381118.7_1_5:60169931-60170042:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.9346008300781	3	459.19872	1374.57433	0.32494	0.00014921	-0.81178	-0.00037277	-0.48684	-0.00022356	459.19832880806536	45.22	0.53997	45.288	45.062	45.602	0.068569					48	18	3	0	0	0	0.31942	1	10128	10128		6.1918	0.78914	1	628370			10499	9991	5909	5909	13642	13642					-0.09797347602921036
FYSFFFMYSH	10	Unmodified	_FYSFFFMYSH_					0	0	0		ENST00000381118.7_1_5:60169931-60170042:-|nuORF	ENST00000381118.7_1_5:60169931-60170042:-|nuORF	ENST00000381118.7_1_5:60169931-60170042:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2691345214844	3	459.19872	1374.57433	0.26951	0.00012376	-0.84605	-0.00038851	-0.57654	-0.00026475	459.19843511825576	45.223	0.64256	45.298	45.042	45.685	0.07505					58	23	3	0	0	0	0.31942	1	10126	10126		6.1918	0.78914	1	664870			10500	9991	5909	5909	13643	13643					-0.09797347602921036
FYSIEFKQF	9	Unmodified	_FYSIEFKQF_					0	0	0		ENST00000354105.8_1_10:102020785-102021812:-|nuORF;ENST00000468709.5_1_10:102020754-102021812:-|nuORF	ENST00000354105.8_1_10:102020785-102021812:-|nuORF	ENST00000354105.8_1_10:102020785-102021812:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.8021850585938	2	604.802957	1207.59136	0.37325	0.00022574	-1.2835	-0.00077625	-0.91023	-0.00055051	604.8018043181938	66.259	0.60332	66.245	65.999	66.603	-0.013588					44	21	3	0	0	0	0.0024096	1	16558	16558		106.94	86.487	1	354570			10501	9587	5910	5910	13644	13644					-0.004131037255092451
FYSIEFKQF	9	Unmodified	_FYSIEFKQF_					0	0	0		ENST00000354105.8_1_10:102020785-102021812:-|nuORF;ENST00000468709.5_1_10:102020754-102021812:-|nuORF	ENST00000354105.8_1_10:102020785-102021812:-|nuORF	ENST00000354105.8_1_10:102020785-102021812:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	604.802957	1207.59136	0.67164	0.00040621	-1.6085	-0.0009728	-0.93683	-0.0005666	604.8014600629349	66.268	0.59373	66.268	66.007	66.6	0	0.042763	-0.00011149	NaN	106.94	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344900			10502	9587	5910	5910							-0.004131037255092451
FYSIEFKQF	9	Unmodified	_FYSIEFKQF_					0	0	0		ENST00000354105.8_1_10:102020785-102021812:-|nuORF;ENST00000468709.5_1_10:102020754-102021812:-|nuORF	ENST00000354105.8_1_10:102020785-102021812:-|nuORF	ENST00000354105.8_1_10:102020785-102021812:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	604.802957	1207.59136	0.69596	0.00042092	-1.8185	-0.0010998	-1.1226	-0.00067892	604.8018136078789	66.079	0.65796	66.163	65.942	66.6	0.083832	-0.062636	-0.00036557	NaN	106.94	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310460			10503	9587	5910	5910							-0.004131037255092451
FYSIVKAF	8	Unmodified	_FYSIVKAF_					0	0	0			REV__nc|ENSG00000144852|O75469-5|NR1I2	REV__nc|ENSG00000144852|O75469-5|NR1I2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.8160400390625	2	487.770929	973.527304	-0.045931	-2.2404E-05	-1.0205	-0.00049776	-1.0664	-0.00052016	487.7705075027166	27.88	0.95938	27.88	27.589	28.548	0					49	33	2	0	0	0	0.34247	1	4960	4960		8.5933	1.304	1	159960	+		10504	16267	5911	5911	13645	13645					0.03948160908225873
FYSKQDFAL	9	Unmodified	_FYSKQDFAL_					0	0	0			REV__ENSG00000153802|ENST00000283916|TMPRSS11D	REV__ENSG00000153802|ENST00000283916|TMPRSS11D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.7763671875	2	559.779482	1117.54441	0.548	0.00030676	-1.4938	-0.0008362	-0.94581	-0.00052945	559.7797463413231	44.754	1.2833	44.754	44.383	45.666	0					111	43	5	0	0	0	0.26612	1	9899	9899		13.906	0.86358	1	2399400	+		10505	16634	5912	5912	13646	13646					-0.009659632766215509
FYSLFSETI	9	Unmodified	_FYSLFSETI_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8301391601562	2	553.773865	1105.53318	0.53462	0.00029606	-1.0619	-0.00058804	-0.52725	-0.00029198	553.7731577693281	83.643	0.22027	83.72	83.652	83.873	0.077095					13	9	2	0	0	0	0.21389	1	21887	21887		19.257	0	1	119590			10506	8602	5913	5913	13647	13647					-0.015367853707630275
FYSMDTTLL	9	Unmodified	_FYSMDTTLL_					0	0	0		ENST00000566679.6_1_16:50776726-50783580:+|nuORF	ENST00000566679.6_1_16:50776726-50783580:+|nuORF	ENST00000566679.6_1_16:50776726-50783580:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.74609375	2	545.759901	1089.50525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.594	1	71.65	71.15	72.15	0.056572								0	0	0	0.17683	1	18200	18200		28.487	6.7402	1				10507	11985	5914	5914	13648	13648					-0.03592431622496406
FYSMDTTLL	9	Unmodified	_FYSMDTTLL_					0	0	0		ENST00000566679.6_1_16:50776726-50783580:+|nuORF	ENST00000566679.6_1_16:50776726-50783580:+|nuORF	ENST00000566679.6_1_16:50776726-50783580:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.745849609375	2	545.759901	1089.50525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.914	1	71.97	71.47	72.47	0.056572								0	0	0	0.14428	1	18298	18298		36.044	7.5574	1				10508	11985	5914	5914	13649	13649					-0.03592431622496406
FYSNIQTVI	9	Unmodified	_FYSNIQTVI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.L681Sfs*33|1|0.27|ENSG00000181222|chr17:7501098-7501098|C/-|frameshift_variant	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7882080078125	2	542.787307	1083.56006	0.45027	0.0002444	0.68507	0.00037185	1.1353	0.00061625	542.7877207896447	67.312	1.1021	67.312	67.076	68.178	0					60	38	2	0	0	0	0.12329	1	16971	16971		34.932	7.3033	1	2052700			10509	7227	5915	5915	13650	13650					0.02162323240418118
FYSNIQTVI	9	Unmodified	_FYSNIQTVI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.L681Sfs*33|1|0.27|ENSG00000181222|chr17:7501098-7501098|C/-|frameshift_variant	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	542.787307	1083.56006	0.43907	0.00023832	0.96266	0.00052252	1.4017	0.00076084	542.7878677320984	67.331	1.0354	67.315	67.035	68.071	-0.016296	0.0052309	0.0001471	NaN	34.932	70	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2229100			10510	7227	5915	5915							0.02162323240418118
FYSRLLQKF	9	Unmodified	_FYSRLLQKF_					0	0	0		ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.3410034179688	2	601.340041	1200.66553	0.77169	0.00046405	0.22306	0.00013413	0.99475	0.00059818	601.3402593388728	51.026	0.61329	51.026	50.713	51.327	0					42	22	2	0	0	0	0.0045319	1	11887	11887		90.135	68.388	1	806250			10511	6794	5916	5916	13651	13651					0.07322284156703063
FYSRLLQKF	9	Unmodified	_FYSRLLQKF_					0	0	0		ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.8159790039062	2	601.340041	1200.66553	0.65718	0.00039519	-0.53323	-0.00032065	0.12395	7.4535E-05	601.3402123032631	51.039	0.76632	51.085	50.713	51.479	0.046574					86	28	4	0	0	0	0.17263	1	11899	11899		38.615	19.358	1	765070			10512	6794	5916	5916	13652	13652					0.07322284156703063
FYSRLLQKF	9	Unmodified	_FYSRLLQKF_					0	0	0		ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.340576171875	2	601.340041	1200.66553	0.52983	0.00031861	-0.29951	-0.00018011	0.23032	0.0001385	601.3402413311651	51.112	0.6189	51.122	50.887	51.506	0.0095634					75	23	4	0	0	0	0.0045319	1	11903	11903		90.135	64.736	1	886100			10513	6794	5916	5916	13653	13653					0.07322284156703063
FYSSQMSYLR	10	Unmodified	_FYSSQMSYLR_					0	0	0			REV__nc|ENSG00000136944|O60663-2|LMX1B	REV__nc|ENSG00000136944|O60663-2|LMX1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.22027587890625	3	427.869262	1280.58596	0.06432	2.7521E-05	-0.48068	-0.00020567	-0.41636	-0.00017815	427.8691053024253	36.134	0.62273	36.216	35.739	36.362	0.082355					31	22	2	0	0	0	0.32082	1	7333	7333		3.3196	1.4133	1	299590	+		10514	15839	5917	5917	13654	13654					-0.04311150579610512
FYSVRTILSS	10	Unmodified	_FYSVRTILSS_					0	0	0			REV__ENSG00000132323|ENST00000254654|ILKAP	REV__ENSG00000132323|ENST00000254654|ILKAP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8338012695312	2	586.819138	1171.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.918	1	81.987	81.487	82.487	0.068993								0	0	0	0.3629	1	21351	21351		9.3831	0.63772	1		+		10515	15560	5918	5918	13655	13655					0.044776836775326956
FYTAFALPFL	10	Unmodified	_FYTAFALPFL_					0	0	0		ENST00000495414.5_1_3:143692156-143692375:+|nuORF	ENST00000495414.5_1_3:143692156-143692375:+|nuORF	ENST00000495414.5_1_3:143692156-143692375:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.806640625	2	595.318243	1188.62193	0.75047	0.00044677	-3.1574	-0.0018797	-2.407	-0.0014329	595.3157150823675	65.95	0.3033	66.038	65.865	66.168	0.088417					15	10	2	0	0	0	0.31165	1	16447	16447		15.847	5.0233	1	89834			10516	11220	5919	5919	13656	13656					0.035166746595450604
FYTAIAQAF	9	Unmodified	_FYTAIAQAF_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2634887695312	2	516.263468	1030.51238	0.43634	0.00022526	0.73737	0.00038068	1.1737	0.00060594	516.2642366079762	72.386	1.1897	72.386	71.799	72.989	0					79	38	3	0	0	0	0.0083926	2	18475	18475;18485		81.89	51.665	1	635670			10517	1896	5920	5920	13657;13658	13657					-0.0016533095979411883
FYTAIAQAF	9	Unmodified	_FYTAIAQAF_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2634887695312	2	516.263468	1030.51238	0.43841	0.00022634	0.82872	0.00042784	1.2671	0.00065417	516.264117216925	72.291	1.1183	72.348	71.783	72.901	0.056572					75	36	3	0	0	0	0.012386	2	18453	18433;18453		75.761	52.612	1	610440			10518	1896	5920	5920	13659;13660	13660					-0.0016533095979411883
FYTAIAQAF	9	Unmodified	_FYTAIAQAF_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2635498046875	2	516.263468	1030.51238	0.35262	0.00018205	0.024114	1.2449E-05	0.37673	0.00019449	516.2634214314861	72.474	1.011	72.445	72.09	73.101	-0.029305					82	35	3	0	0	0	0.019245	2	18467	18467;18478		65.235	42.087	1	574770			10519	1896	5920	5920	13661;13662	13661					-0.0016533095979411883
FYTAYLQRL	9	Unmodified	_FYTAYLQRL_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1;nc|ENSG00000116260|O00391-2|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8167114257812	2	587.816399	1173.61824	0.31152	0.00018311	-0.27998	-0.00016458	0.031532	1.8535E-05	587.8162680528019	62.018	1.1213	62.018	61.597	62.718	0					159	41	5	0	0	0	0.00012108	2	15198	15198;15252		137.42	99.248	1	3237900			10520	2719	5921	5921	13663;13664	13663					0.038380048857106885
FYTAYLQRL	9	Unmodified	_FYTAYLQRL_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1;nc|ENSG00000116260|O00391-2|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.8164672851562	2	587.816399	1173.61824	0.014956	8.7913E-06	-0.19348	-0.00011373	-0.17852	-0.00010494	587.8162318242829	61.917	1.4823	62.014	61.615	63.097	0.096985					161	53	5	0	0	0	0.00014042	2	15174	15174;15223		134.3	96.12	1	3470900			10521	2719	5921	5921	13665;13666	13665					0.038380048857106885
FYTAYLQRL	9	Unmodified	_FYTAYLQRL_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1;nc|ENSG00000116260|O00391-2|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.8165283203125	2	587.816399	1173.61824	0.18533	0.00010894	-0.13964	-8.2085E-05	0.045685	2.6854E-05	587.8163506006454	61.974	1.1517	61.966	61.553	62.705	-0.0085564					167	41	5	0	0	0	4.3881E-05	2	15190	15190;15238		149.91	104.21	1	3345000			10522	2719	5921	5921	13667;13668	13667					0.038380048857106885
FYTDAMVVF	9	Oxidation (M)	_FYTDAM(Oxidation (M))VVF_		FYTDAM(1)VVF		FYTDAM(60)VVF	0	0	1		ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.7546997070312	2	554.754618	1107.49468	0.37387	0.00020741	-0.32554	-0.00018059	0.048328	2.681E-05	554.7542718765951	71.434	0.62155	71.434	71.233	71.855	0					39	21	3	0	0	0	0.029841	1	18177	18177		60.39	37.241	1	591710			10523	3895	5922	5922	13669	13669		486			-0.05476414276949981
FYTDAMVVF	9	Oxidation (M)	_FYTDAM(Oxidation (M))VVF_		FYTDAM(1)VVF		FYTDAM(44)VVF	0	0	1		ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.7538452148438	2	554.754618	1107.49468	0.32092	0.00017803	0.028409	1.576E-05	0.34933	0.00019379	554.7541172151567	71.43	0.77428	71.487	71.175	71.949	0.056572					49	27	3	0	0	0	0.072844	1	18159	18159		44.407	15.92	1	591950			10524	3895	5922	5922	13670	13670		486			-0.05476414276949981
FYTDAMVVF	9	Oxidation (M)	_FYTDAM(Oxidation (M))VVF_		FYTDAM(1)VVF		FYTDAM(44)VVF	0	0	1		ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.7540893554688	2	554.754618	1107.49468	0.35773	0.00019846	0.25559	0.00014179	0.61332	0.00034024	554.7543318586861	71.556	0.55707	71.529	71.236	71.793	-0.027275					39	19	3	0	0	0	0.072844	1	18186	18186		44.407	21.259	1	585790			10525	3895	5922	5922	13671	13671		486			-0.05476414276949981
FYTDPSYFF	9	Unmodified	_FYTDPSYFF_					0	0	0		nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3	nc|ENSG00000158195|Q9Y6W5-2|WASF2	nc|ENSG00000158195|Q9Y6W5-2|WASF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8307495117188	2	593.758215	1185.50188	0.68485	0.00040664	-0.59435	-0.0003529	0.090507	5.3739E-05	593.7575902985498	84.583	0.53896	84.663	84.346	84.885	0.080887					35	20	2	0	0	0	0.13898	1	22153	22153		43.858	29.277	1	213750			10526	3684	5923	5923	13672	13672					-0.08345358404858416
FYTDPSYFF	9	Unmodified	_FYTDPSYFF_					0	0	0		nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3	nc|ENSG00000158195|Q9Y6W5-2|WASF2	nc|ENSG00000158195|Q9Y6W5-2|WASF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	593.758215	1185.50188	0.67765	0.00040236	0.010139	6.0204E-06	0.68779	0.00040838	593.7579533344816	84.631	0.51933	84.631	84.376	84.895	0	-0.01801	0.00022981	NaN	43.858	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248300			10527	3684	5923	5923							-0.08345358404858416
FYTDPSYFF	9	Unmodified	_FYTDPSYFF_					0	0	0		nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3	nc|ENSG00000158195|Q9Y6W5-2|WASF2	nc|ENSG00000158195|Q9Y6W5-2|WASF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	593.758215	1185.50188	0.61256	0.00036371	-0.13375	-7.9415E-05	0.47881	0.00028429	593.7579904138966	84.666	0.50249	84.653	84.415	84.917	-0.01284	0.0036475	5.8935E-05	NaN	43.858	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218740			10528	3684	5923	5923							-0.08345358404858416
FYTERLERL	9	Unmodified	_FYTERLERL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENST00000477923.1_1_10:135093272-135094982:-|nuORF	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.55572509765625	3	409.555784	1225.64552	0.16613	6.804E-05	-0.44358	-0.00018167	-0.27745	-0.00011363	409.5555845877477	43.561	0.69292	43.645	43.356	44.049	0.083992					59	25	3	0	0	0	0.2141	1	9566	9566		21.59	5.0243	1	771040			10529	3492	5924	5924	13673	13673					0.04172488426070231
FYTERLERL	9	Unmodified	_FYTERLERL_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENST00000477923.1_1_10:135093272-135094982:-|nuORF	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	409.555784	1225.64552	0.15834	6.485E-05	-0.3429	-0.00014044	-0.18456	-7.5588E-05	409.5556330051399	43.524	0.72715	43.601	43.347	44.074	0.077515	-0.11985	-0.0002102	NaN	21.59	48	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	766530			10530	3492	5924	5924							0.04172488426070231
FYTFPFQQL	9	Unmodified	_FYTFPFQQL_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.7977905273438	2	595.797675	1189.5808	0.61521	0.00036654	-0.14776	-8.8035E-05	0.46745	0.0002785	595.7976383070738	88.35	0.5829	88.35	88.119	88.702	0					75	31	3	0	0	0	0.0013036	2	23330	23330;23373		118.89	91.266	1	271470			10531	4234	5925	5925	13674;13675	13674					-0.006410863799146682
FYTFPFQQL	9	Unmodified	_FYTFPFQQL_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.7978515625	2	595.797675	1189.5808	0.55857	0.00033279	0.065744	3.917E-05	0.62431	0.00037196	595.7976139194935	88.179	0.65176	88.268	88.073	88.724	0.089195					68	29	3	0	0	0	0.003317	1	23291	23291		99.755	72.126	1	366300			10532	4234	5925	5925	13676	13676					-0.006410863799146682
FYTFPFQQL	9	Unmodified	_FYTFPFQQL_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.7980346679688	2	595.797675	1189.5808	0.48146	0.00028685	0.071671	4.2701E-05	0.55313	0.00032956	595.7977276079868	88.343	0.66937	88.341	88.108	88.778	-0.0028381					74	31	3	0	0	0	0.0028626	2	23309	23309;23353		103.35	76.47	1	523420			10533	4234	5925	5925	13677;13678	13677					-0.006410863799146682
FYTKRFQEL	9	Unmodified	_FYTKRFQEL_					0	0	0		ENSG00000178921|ENST00000314666|PFAS;ENST00000580356.5_1_17:8159124-8159921:+|nuORF	ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.220703125	3	411.220513	1230.63971	0.021786	8.9588E-06	2.061	0.00084754	2.0828	0.0008565	411.22172080733964	40.679	1.2785	40.679	40.193	41.471	0					141	46	4	0	0	0	0.086462	1	8638	8638		40.239	6.0175	1	872080			10534	7086	5926	5926	13679	13679					0.03361389914425672
FYTKRFQEL	9	Unmodified	_FYTKRFQEL_					0	0	0		ENSG00000178921|ENST00000314666|PFAS;ENST00000580356.5_1_17:8159124-8159921:+|nuORF	ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	615.7662353515625	2	616.327131	1230.63971	0.42023	0.000259	0.0088118	5.4309E-06	0.42905	0.00026443	616.3271402139508	40.514	0.5917	40.514	40.283	40.875	0					39	21	3	0	0	0	0.18022	1	8669	8669		20.415	11.031	1	323400			10535	7086	5926	5926	13680	13680					0.03361389914425672
FYTKRFQEL	9	Unmodified	_FYTKRFQEL_					0	0	0		ENSG00000178921|ENST00000314666|PFAS;ENST00000580356.5_1_17:8159124-8159921:+|nuORF	ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.22052001953125	3	411.220513	1230.63971	0.39433	0.00016216	-0.12815	-5.2698E-05	0.26618	0.00010946	411.220534138931	40.208	0.88501	40.3	39.994	40.879	0.09267					69	31	4	0	0	0	0.13296	1	8533	8533		33.445	5.2113	1	1149900			10536	7086	5926	5926	13681	13681					0.03361389914425672
FYTKRFQEL	9	Unmodified	_FYTKRFQEL_					0	0	0		ENSG00000178921|ENST00000314666|PFAS;ENST00000580356.5_1_17:8159124-8159921:+|nuORF	ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2204895019531	3	411.220513	1230.63971	0.26848	0.0001104	-0.10584	-4.3525E-05	0.16264	6.688E-05	411.22050719423146	40.186	0.63981	40.285	39.977	40.617	0.099407					66	22	4	0	0	0	0.13296	2	8558	8510;8558		33.445	5.2113	1	1109100			10537	7086	5926	5926	13682;13683	13683					0.03361389914425672
FYTKRFQEL	9	Unmodified	_FYTKRFQEL_					0	0	0		ENSG00000178921|ENST00000314666|PFAS;ENST00000580356.5_1_17:8159124-8159921:+|nuORF	ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	616.327131	1230.63971	0.39408	0.00024288	0.039807	2.4534E-05	0.43389	0.00026742	616.3270942144857	40.214	0.4676	40.306	40.09	40.557	0.092674	-0.066108	0.00010238	NaN	20.415	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232020			10538	7086	5926	5926							0.03361389914425672
FYTKRFQEL	9	Unmodified	_FYTKRFQEL_					0	0	0		ENSG00000178921|ENST00000314666|PFAS;ENST00000580356.5_1_17:8159124-8159921:+|nuORF	ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	616.327131	1230.63971	0.35442	0.00021844	-0.23384	-0.00014412	0.12058	7.4314E-05	616.3268354932918	40.198	0.44167	40.297	40.09	40.532	0.099407	-0.075404	-0.00023494	NaN	20.415	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306280			10539	7086	5926	5926							0.03361389914425672
FYTLHVIKS	9	Unmodified	_FYTLHVIKS_					0	0	0		nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8012084960938	2	554.313492	1106.61243	0.016474	9.1315E-06	-2.2235	-0.0012325	-2.207	-0.0012234	554.3126951317737	29.931	0.38482	29.944	29.684	30.069	0.013475					20	12	2	0	0	0	0.25938	1	5442	5442		4.3292	0.73274	1	89576			10540	1973	5927	5927	13684	13684					0.0633890637402601
FYTLHVIKS	9	Unmodified	_FYTLHVIKS_					0	0	0		nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	554.313492	1106.61243	0.46335	0.00025684	-3.1661	-0.001755	-2.7028	-0.0014982	554.3119711341657	29.901	0.50766	29.901	29.633	30.141	0	0.01123	-0.00028156	NaN	4.3292	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106710			10541	1973	5927	5927							0.0633890637402601
FYTLHVIKS	9	Unmodified	_FYTLHVIKS_					0	0	0		nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	nc|ENSG00000105388|P06731-2|CEACAM5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	554.313492	1106.61243	0.38883	0.00021553	-2.9026	-0.0016089	-2.5138	-0.0013934	554.3120373794576	29.812	0.43742	29.824	29.622	30.06	0.012266	-0.065625	1.0607E-05	NaN	4.3292	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97689			10542	1973	5927	5927							0.0633890637402601
FYTLIIKKE	9	Unmodified	_FYTLIIKKE_					0	0	0			REV__ENST00000421674.5_1_15:44177877-44211195:-|nuORF	REV__ENST00000421674.5_1_15:44177877-44211195:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3688354492188	2	577.844625	1153.6747	0.10229	5.9107E-05	-0.79435	-0.00045901	-0.69206	-0.0003999	577.8441772298695	69.764	0.43522	69.764	69.485	69.92	0					37	15	3	0	0	0	0.18943	1	17593	17593		30.225	6.435	1	327520	+		10543	17675	5928	5928	13685	13685					0.10400632722348746
FYTLIIKKE	9	Unmodified	_FYTLIIKKE_					0	0	0			REV__ENST00000421674.5_1_15:44177877-44211195:-|nuORF	REV__ENST00000421674.5_1_15:44177877-44211195:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.368896484375	2	577.844625	1153.6747	0.17513	0.0001012	-1.2317	-0.00071174	-1.0566	-0.00061054	577.8440825296922	69.692	0.45236	69.758	69.487	69.939	0.066048					38	15	3	0	0	0	0.18943	1	17572	17572		30.225	6.435	1	435850	+		10544	17675	5928	5928	13686	13686					0.10400632722348746
FYTLIIKKE	9	Unmodified	_FYTLIIKKE_					0	0	0			REV__ENST00000421674.5_1_15:44177877-44211195:-|nuORF	REV__ENST00000421674.5_1_15:44177877-44211195:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3688354492188	2	577.844625	1153.6747	0.18551	0.0001072	-0.40725	-0.00023533	-0.22175	-0.00012813	577.8444863366057	69.73	0.45071	69.708	69.462	69.913	-0.022087					42	16	3	0	0	0	0.18943	1	17601	17601		30.225	10.968	1	316780	+		10545	17675	5928	5928	13687	13687					0.10400632722348746
FYTLIPHDF	9	Unmodified	_FYTLIPHDF_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3688354492188	2	576.78985	1151.56515	0.06595	3.8039E-05	0.4398	0.00025367	0.50576	0.00029171	576.7901056169039	69.484	1.0997	69.484	69.174	70.273	0					76	39	3	0	0	0	0.0063774	1	17593	17593		96.285	67.798	1	812460			10546	4547	5929	5929	13688	13688					-0.0045737289697171946
FYTLIPHDF	9	Unmodified	_FYTLIPHDF_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.368896484375	2	576.78985	1151.56515	0.20912	0.00012062	0.17144	9.8882E-05	0.38055	0.0002195	576.7900590061377	69.461	0.70949	69.527	69.284	69.993	0.066048					66	24	4	0	0	0	0.0031412	1	17572	17572		108	79.51	1	808890			10547	4547	5929	5929	13689	13689					-0.0045737289697171946
FYTLIPHDF	9	Unmodified	_FYTLIPHDF_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3688354492188	2	576.78985	1151.56515	0.15969	9.2107E-05	0.34716	0.00020024	0.50685	0.00029235	576.790086032385	69.563	1.2007	69.541	69.209	70.41	-0.022087					84	43	3	0	0	0	0.0031412	1	17601	17601		108	79.51	1	923770			10548	4547	5929	5929	13690	13690					-0.0045737289697171946
FYTQLVFFFV	10	Unmodified	_FYTQLVFFFV_					0	0	0			REV__ENSG00000183185|ENST00000472788|GABRR3	REV__ENSG00000183185|ENST00000472788|GABRR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2103576660156	3	437.565509	1309.6747	-0.023452	-1.0262E-05	2.2321	0.0009767	2.2087	0.00096644	437.56632042330773	24.881	0.41677	24.881	24.736	25.153	0					17	14	2	0	0	0	0.32068	1	3888	3888		3.5871	0	1	68032	+		10549	18244	5930	5930	13691	13691					0.032246327223447224
FYTRWKHYER	10	Unmodified	_FYTRWKHYER_					0	0	0			REV__ENSG00000175727|ENST00000319080|MLXIP	REV__ENSG00000175727|ENST00000319080|MLXIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.9177551269531	3	495.917716	1484.73132	1.0039	0.00049787	-0.62759	-0.00031123	0.37634	0.00018663	495.9170675842261	55.926	0.64532	55.926	55.539	56.184	0					67	22	5	0	0	0	0.38522	2	13385	13385;13436		6.1918	1.4759	1	1712900	+		10550	17906	5931	5931	13692;13693	13692					0.008340733315890247
FYTSITRARF	10	Unmodified	_FYTSITRARF_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2276611328125	3	421.227779	1260.66151	0.091694	3.8624E-05	0.16056	6.7631E-05	0.25225	0.00010626	421.22782569712535	45.032	0.98047	45.032	44.739	45.72	0					108	35	4	0	0	0	0.3036	2	10009	10009;10059		19.987	7.8122	1	2196000			10551	2285;8222	5932	5932	13694;13695	13694					0.04160194662949834
FYTSITRARF	10	Unmodified	_FYTSITRARF_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.227783203125	3	421.227779	1260.66151	0.14511	6.1125E-05	0.073382	3.0911E-05	0.21849	9.2036E-05	421.22777036859094	44.741	1.0624	44.809	44.54	45.602	0.068569					93	37	3	0	0	0	0.23653	2	9933	9933;9985		28.181	16.007	1	2271400			10552	2285;8222	5932	5932	13696;13697	13696					0.04160194662949834
FYTSITRARF	10	Unmodified	_FYTSITRARF_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.2280578613281	3	421.227779	1260.66151	0.23553	9.9211E-05	0.0115	4.844E-06	0.24703	0.00010406	421.2277554371602	44.732	1.0248	44.807	44.556	45.58	0.075047					109	37	4	0	0	0	0.24548	2	9987	9940;9987		27.088	11.789	1	2258600			10553	2285;8222	5932	5932	13698;13699	13699					0.04160194662949834
FYTVIPHNF	9	Unmodified	_FYTVIPHNF_					0	0	0		ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3	ENSG00000041880|ENST00000398755|PARP3	ENSG00000041880|ENST00000398755|PARP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.259765625	2	569.290017	1136.56548	0.40253	0.00022916	0.98133	0.00055866	1.3839	0.00078781	569.2907788626484	68.099	0.24661	68.177	68	68.246	0.078041					13	8	2	0	0	0	0.2451	1	17136	17136		15.847	0	1	93883			10554	607	5933	5933	13700	13700					0.0026604682288962067
FYTVIPHNF	9	Unmodified	_FYTVIPHNF_					0	0	0		ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3	ENSG00000041880|ENST00000398755|PARP3	ENSG00000041880|ENST00000398755|PARP3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.290017	1136.56548	0.23989	0.00013657	0.3293	0.00018747	0.56919	0.00032403	569.2902317611554	68.18	0.20166	68.18	68.074	68.275	0	0.0016284	-0.00023691	NaN	15.847	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133490			10555	607	5933	5933							0.0026604682288962067
FYTYRPRL	8	Unmodified	_FYTYRPRL_					0	0	0			REV__ENSG00000154342|ENST00000284523|WNT3A	REV__ENSG00000154342|ENST00000284523|WNT3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.302734375	2	558.303458	1114.59236	-0.072768	-4.0627E-05	-0.91086	-0.00050854	-0.98363	-0.00054916	558.3028568380976	14.489	0.35515	14.423	14.261	14.616	-0.066068					16	12	2	0	0	0	0.46092	1	752	752		2.0598	0.21551	1	36444	+		10556	16662	5934	5934	13701	13701					0.03965155434070766
FYVAVAALIWL	11	Unmodified	_FYVAVAALIWL_					0	0	0			REV__ENSG00000206579|ENST00000327381|XKR4	REV__ENSG00000206579|ENST00000327381|XKR4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3688354492188	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.47	1	105.47	104.97	105.97	-0.0027847								0	0	0	0.37109	1	27946	27946		3.5965	0.60125	1		+		10557	19023	5935	5935	13702	13702					0.10020911993365189
FYVFIIPFEME	11	Unmodified	_FYVFIIPFEME_					0	0	0		ENST00000479590.1_1_3:186271391-186272251:-|nuORF;nc|ENSG00000113838|Q9NVR7-2|TBCCD1;ENSG00000113838|ENST00000338733|TBCCD1	ENST00000479590.1_1_3:186271391-186272251:-|nuORF	ENST00000479590.1_1_3:186271391-186272251:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.3079528808594	3	478.905314	1433.69411	-0.039288	-1.8815E-05	-0.50806	-0.00024331	-0.54735	-0.00026213	479.23968020661164	12.471	0.16789	12.374	12.268	12.436	-0.096607					7	5	2	0	0	0	0.33346	1	133	133		0.50596	0	1	17509			10558	2535	5936	5936	13703	13703					-0.0053877904904311436
FYVGHIDAF	9	Unmodified	_FYVGHIDAF_					0	0	0		ENSG00000128915|ENST00000261520|ICE2;ENST00000558121.5_1_15:60715835-60734771:-|nuORF	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7615966796875	2	534.761092	1067.50763	0.35546	0.00019008	0.26287	0.00014057	0.61832	0.00033066	534.7612203887757	61.68	0.80361	61.68	61.437	62.24	0					61	29	3	0	0	0	0.013258	1	15180	15180		74.423	51.274	1	754370			10559	3399	5937	5937	13704	13704					-0.023422151025442872
FYVGHIDAF	9	Unmodified	_FYVGHIDAF_					0	0	0		ENSG00000128915|ENST00000261520|ICE2;ENST00000558121.5_1_15:60715835-60734771:-|nuORF	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7615966796875	2	534.761092	1067.50763	-0.077178	-4.1272E-05	0.81471	0.00043568	0.73754	0.00039441	534.7614380973739	61.589	0.79904	61.686	61.455	62.254	0.096985					61	28	3	0	0	0	0.0046213	1	15141	15141		89.427	62.543	1	848760			10560	3399	5937	5937	13705	13705					-0.023422151025442872
FYVGHIDAF	9	Unmodified	_FYVGHIDAF_					0	0	0		ENSG00000128915|ENST00000261520|ICE2;ENST00000558121.5_1_15:60715835-60734771:-|nuORF	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7615966796875	2	534.761092	1067.50763	0.11599	6.2027E-05	0.58885	0.0003149	0.70484	0.00037692	534.7613177768422	61.679	0.74121	61.671	61.425	62.167	-0.0085564					57	26	3	0	0	0	0.0036555	1	15152	15152		97.075	70.191	1	926440			10561	3399	5937	5937	13706	13706					-0.023422151025442872
FYVIDRGTF	9	Unmodified	_FYVIDRGTF_					0	0	0		ENSG00000005249|ENST00000265717|PRKAR2B	ENSG00000005249|ENST00000265717|PRKAR2B	ENSG00000005249|ENST00000265717|PRKAR2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.7962646484375	2	559.287474	1116.5604	0.40176	0.0002247	-1.9268	-0.0010776	-1.5251	-0.00085295	559.2865000573395	59.607	0.36692	59.596	59.372	59.739	-0.011486					18	12	2	0	0	0	0.1939	1	14461	14461		24.021	0	1	191510			10562	331	5938	5938	13707	13707					0.0067774296028346726
FYVPAEPKLAF	11	Unmodified	_FYVPAEPKLAF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.3472900390625	2	641.347532	1280.68051	0.40707	0.00026107	-0.18421	-0.00011814	0.22286	0.00014293	641.3471361755196	71.037	0.58407	71.037	70.847	71.431	0					56	20	3	0	0	0	0.043109	2	18063	18016;18063		55.235	42.994	1	1088900			10563	4775	5939	5939	13708;13709	13709					0.05139731234021383
FYVPAEPKLAF	11	Unmodified	_FYVPAEPKLAF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.34619140625	2	641.347532	1280.68051	0.47661	0.00030568	-0.21247	-0.00013627	0.26415	0.00016941	641.3471672735718	71.025	0.66392	71.086	70.827	71.491	0.060783					52	23	3	0	0	0	0.049742	4	17998	17987;17998;18043;18108		53.317	36.204	1	1080800			10564	4775	5939	5939	13710;13711;13712;13713	13711					0.05139731234021383
FYVPAEPKLAF	11	Unmodified	_FYVPAEPKLAF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.3474731445312	2	641.347532	1280.68051	0.58631	0.00037603	-0.30785	-0.00019744	0.27846	0.00017859	641.3471715765855	71.103	0.70681	71.078	70.833	71.54	-0.024864					63	25	3	0	0	0	0.043109	3	18028	18028;18079;18137		55.235	38.122	1	1326300			10565	4775	5939	5939	13714;13715;13716	13714					0.05139731234021383
FYWICIFF	8	Unmodified	_FYWICIFF_					0	0	0		ENSG00000256394|ENST00000537611|ASIC5	ENSG00000256394|ENST00000537611|ASIC5	ENSG00000256394|ENST00000537611|ASIC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.7754516601562	2	569.775157	1137.53576	0.45465	0.00025905	0.032992	1.8798E-05	0.48765	0.00027785	569.7751893765216	83.432	0.76707	83.416	83.11	83.877	-0.016823					110	32	4	0	0	0	0.35781	2	21800	21800;21848		24.21	7.0971	1	1454300			10566	8626	5940	5940	13717;13718	13717					-0.027506084468086556
FYWKAHLI	8	Unmodified	_FYWKAHLI_					0	0	0		ENST00000377618.4_9:39444499-39464431:-|nuORF;nc|ENSG00000198416|Q4V348|ZNF658B;ENST00000602828.1_9:39444499-39446956:-|nuORF	ENST00000377618.4_9:39444499-39464431:-|nuORF	ENST00000377618.4_9:39444499-39464431:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8186645507812	2	539.297645	1076.58074	0.63869	0.00034444	-2.1409	-0.0011546	-1.5022	-0.00081014	539.79797839367	93.841	0.16232	93.841	93.784	93.946	-0.00051117					15	11	2	0	0	0	0.34185	1	25033	25033		10.183	2.2732	1	125370			10567	9938	5941	5941	13719	13719					0.04550958410732164
FYWKAHLI	8	Unmodified	_FYWKAHLI_					0	0	0		ENST00000377618.4_9:39444499-39464431:-|nuORF;nc|ENSG00000198416|Q4V348|ZNF658B;ENST00000602828.1_9:39444499-39446956:-|nuORF	ENST00000377618.4_9:39444499-39464431:-|nuORF	ENST00000377618.4_9:39444499-39464431:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8185424804688	2	539.297645	1076.58074	0.65277	0.00035204	-1.383	-0.00074583	-0.73019	-0.00039379	539.798759289205	93.408	0.067154	93.407	93.372	93.439	-0.00051117					6	4	2	0	0	0	0.34218	1	24871	24871		9.3474	0	1	85372			10568	9938	5941	5941	13720	13720					0.04550958410732164
FYWKAHLI	8	Unmodified	_FYWKAHLI_					0	0	0		ENST00000377618.4_9:39444499-39464431:-|nuORF;nc|ENSG00000198416|Q4V348|ZNF658B;ENST00000602828.1_9:39444499-39446956:-|nuORF	ENST00000377618.4_9:39444499-39464431:-|nuORF	ENST00000377618.4_9:39444499-39464431:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	539.297645	1076.58074	0.36515	0.00019692	-0.94229	-0.00050818	-0.57714	-0.00031125	539.7992369542065	93.524	0.063416	93.524	93.508	93.572	0	0.058301	0.00024402	NaN	9.3474	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46910			10569	9938	5941	5941							0.04550958410732164
FYWLLNWFIIP	11	Unmodified	_FYWLLNWFIIP_					0	0	0			REV__ENSG00000198837|ENST00000361217|DENND4B	REV__ENSG00000198837|ENST00000361217|DENND4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.27703857421875	3	504.607708	1510.80129	0.84616	0.00042698	1.7014	0.00085856	2.5476	0.0012855	504.60863543565574	50.224	0.38279	50.269	50.108	50.491	0.044891					22	13	2	0	0	0	0.33236	1	11613	11613		4.4062	1.7749	1	211730	+		10570	18872	5942	5942	13721	13721					0.06632558947489997
FYWYEEEES	9	Unmodified	_FYWYEEEES_					0	0	0		ENSG00000074771|ENST00000159060|NOX3	ENSG00000074771|ENST00000159060|NOX3	ENSG00000074771|ENST00000159060|NOX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.252685546875	2	641.250951	1280.48735	0.5937	0.00038071	0.74703	0.00047903	1.3407	0.00085974	641.2515855736018	71.519	0.17817	71.492	71.452	71.63	-0.027275					7	5	2	0	0	0	0.34374	1	18190	18190		2.3027	0	1	300340			10571	1027	5943	5943	13722	13722					-0.14167475343651859
FYYDQDQKN	9	Unmodified	_FYYDQDQKN_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.2386779785156	3	407.512132	1219.51457	-0.37876	-0.00015435	3.858	0.0015722	3.4793	0.0014178	407.51390813133867	14.501	0.19944	14.501	14.423	14.623	0					9	6	2	0	0	0	0.26168	1	760	760		0.96228	0.33545	1	29201	+		10572	14131	5944	5944	13723	13723					-0.08640947012622746
FYYFIFVRFFF	11	Unmodified	_FYYFIFVRFFF_					0	0	0			REV__ENST00000220003.13_1_15:75095155-75095200:+|nuORF	REV__ENST00000220003.13_1_15:75095155-75095200:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2927856445312	3	532.607708	1594.80129	0.6351	0.00033826	-1.9933	-0.0010617	-1.3582	-0.0007234	532.60665378302	29.885	0.40111	29.885	29.633	30.034	0					27	13	3	0	0	0	0.33347	1	5425	5425		0.45452	0.35968	1	113360	+		10573	19422	5945	5945	13724	13724					0.027685589474685912
FYYLTQNKKSD	11	Unmodified	_FYYLTQNKKSD_					0	0	0		ENSG00000153790|ENST00000283905|C7orf31	ENSG00000153790|ENST00000283905|C7orf31	ENSG00000153790|ENST00000283905|C7orf31	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.95928955078125	3	469.56987	1405.68778	0.15411	7.2366E-05	-0.4678	-0.00021966	-0.31369	-0.0001473	469.5695935504843	90.847	1.0947	90.938	89.964	91.059	0.090668					117	84	2	0	0	0	0.33334	1	23896	23896		1.2148	1.2148	1	415880			10574	5085	5946	5946	13725	13725					0.0011641904379757761
FYYLTQNKKSD	11	Unmodified	_FYYLTQNKKSD_					0	0	0		ENSG00000153790|ENST00000283905|C7orf31	ENSG00000153790|ENST00000283905|C7orf31	ENSG00000153790|ENST00000283905|C7orf31	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	469.56987	1405.68778	0.089019	4.1801E-05	-0.66543	-0.00031246	-0.57641	-0.00027066	469.56964236968025	90.689	1.1179	90.689	89.938	91.056	0	-0.055716	-2.704E-05	NaN	1.2148	196	89	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379810			10575	5085	5946	5946							0.0011641904379757761
FYYLTQNKKSD	11	Unmodified	_FYYLTQNKKSD_					0	0	0		ENSG00000153790|ENST00000283905|C7orf31	ENSG00000153790|ENST00000283905|C7orf31	ENSG00000153790|ENST00000283905|C7orf31	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	469.56987	1405.68778	0.34651	0.00016271	-0.72474	-0.00034031	-0.37823	-0.00017761	469.56953507843366	90.606	1.351	90.607	89.622	90.973	0.0003891	-0.13758	-0.00011059	NaN	1.2148	240	110	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383420			10576	5085	5946	5946							0.0011641904379757761
GAAAFIYEK	9	Unmodified	_GAAAFIYEK_					0	0	0		ENSG00000002933|ENST00000004103|TMEM176A;ENST00000481305.1_1_7:150500415-150501953:+|nuORF;ENST00000475007.5_1_7:150500316-150501569:+|nuORF	ENSG00000002933|ENST00000004103|TMEM176A	ENSG00000002933|ENST00000004103|TMEM176A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.25579833984375	2	485.255643	968.496732	-0.14385	-6.9804E-05	0.63994	0.00031053	0.49609	0.00024073	485.2558261616179	39.066	0.74287	39.066	38.711	39.454	0					63	26	3	0	0	0	0.026033	1	8224	8224		82.529	54.901	1	1641800			10577	299	5947	5947	13726	13726					0.011223825231809315
GAAAFIYEK	9	Unmodified	_GAAAFIYEK_					0	0	0		ENSG00000002933|ENST00000004103|TMEM176A;ENST00000481305.1_1_7:150500415-150501953:+|nuORF;ENST00000475007.5_1_7:150500316-150501569:+|nuORF	ENSG00000002933|ENST00000004103|TMEM176A	ENSG00000002933|ENST00000004103|TMEM176A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.2557373046875	2	485.255643	968.496732	0.12915	6.2672E-05	0.45095	0.00021883	0.5801	0.0002815	485.2557494738663	38.917	0.65786	39.01	38.732	39.39	0.09267					70	23	4	0	0	0	0.0079761	1	8146	8146		82.529	48.128	1	1770400			10578	299	5947	5947	13727	13727					0.011223825231809315
GAAAFIYEK	9	Unmodified	_GAAAFIYEK_					0	0	0		ENSG00000002933|ENST00000004103|TMEM176A;ENST00000481305.1_1_7:150500415-150501953:+|nuORF;ENST00000475007.5_1_7:150500316-150501569:+|nuORF	ENSG00000002933|ENST00000004103|TMEM176A	ENSG00000002933|ENST00000004103|TMEM176A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2557678222656	2	485.255643	968.496732	0.44675	0.00021679	0.025802	1.2521E-05	0.47255	0.00022931	485.25557999559175	38.955	0.80853	39.054	38.784	39.593	0.099403					66	28	3	0	0	0	0.0037449	1	8174	8174		96.367	58.393	1	1586500			10579	299	5947	5947	13728	13728					0.011223825231809315
GAAAVSPRV	9	Unmodified	_GAAAVSPRV_					0	0	0			REV__ENST00000529833.5_3_8:144766707-144771377:+|nuORF	REV__ENST00000529833.5_3_8:144766707-144771377:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.9150085449219	2	414.240327	826.466101	0.60178	0.00024928	-1.1872	-0.00049179	-0.58543	-0.00024251	414.23968608382745	32.417	0.32944	32.472	32.26	32.59	0.055309					18	11	2	0	0	0	0.24739	1	6210	6210		8.5933	0	1	102320	+		10580	22001	5948	5948	13729	13729					0.045926489288035555
GAARFALQK	9	Unmodified	_GAARFALQK_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2824401855469	2	481.282526	960.550499	0.3515	0.00016917	-0.48324	-0.00023258	-0.13174	-6.3403E-05	481.2821416570985	23.789	0.59934	23.75	23.45	24.049	-0.038927					42	20	3	0	0	0	0.23784	1	3563	3563		19.257	2.3147	1	208570			10581	326	5949	5949	13730	13730					0.06864599745551914
GADFLVHYGHS	11	Unmodified	_GADFLVHYGHS_					0	0	0		nc|ENSG00000108963|Q9BZG8-2|DPH1;ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1;ENST00000576129.5_1_17:1936818-1940251:+|nuORF	nc|ENSG00000108963|Q9BZG8-2|DPH1	nc|ENSG00000108963|Q9BZG8-2|DPH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.2531127929688	2	601.783087	1201.55162	0.43526	0.00026193	-1.3756	-0.00082779	-0.9403	-0.00056586	601.782444198925	58.914	0.43171	58.9	58.712	59.144	-0.014271					20	14	2	0	0	0	0.3239	1	14301	14301		12.241	0	1	194840			10582	2227	5950	5950	13731	13731					-0.041092306761811415
GADWRWTEL	9	Unmodified	_GADWRWTEL_					0	0	0		ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.7603149414062	2	567.272355	1132.53016	0.16934	9.6062E-05	-0.53892	-0.00030572	-0.36958	-0.00020965	567.2719371165095	16.294	0.30998	16.179	16.02	16.33	-0.11434					16	10	2	0	0	0	0.26145	1	1254	1254		2.0598	0	1	53363			10583	4937	5951	5951	13732	13732					-0.03080615704925549
GAFFVWLL	8	Unmodified	_GAFFVWLL_					0	0	0			REV__ENST00000252593.6_1_19:17513793-17513853:-|nuORF	REV__ENST00000252593.6_1_19:17513793-17513853:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7684326171875	2	476.768189	951.521825	0.22081	0.00010528	0.61742	0.00029437	0.83824	0.00039964	476.76842913988816	71.578	1.5978	71.578	71.098	72.696	0					92	57	2	0	0	0	0.45851	1	18339	18339		2.8892	2.8892	1	463030	+		10584	19531	5952	5952	13733	13733					0.04412482116435967
GAFPTPTRRDA	11	Unmodified	_GAFPTPTRRDA_					0	0	0			REV__ENST00000502296.5_1_5:179125418-179125673:+|nuORF	REV__ENST00000502296.5_1_5:179125418-179125673:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.827880859375	2	594.809636	1187.60472	0.16513	9.8221E-05	0.45673	0.00027167	0.62186	0.00036989	594.8099302625889	12.729	0.48925	12.63	12.49	12.98	-0.099291					43	16	4	0	0	0	0.3327	1	180	180		2.7352	0.67545	1	133950	+		10585	21714	5953	5953	13734	13734					0.018421471064584694
GAFPTPTRRDA	11	Unmodified	_GAFPTPTRRDA_					0	0	0			REV__ENST00000502296.5_1_5:179125418-179125673:+|nuORF	REV__ENST00000502296.5_1_5:179125418-179125673:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	594.809636	1187.60472	0.11012	6.5499E-05	0.32305	0.00019215	0.43316	0.00025765	594.8097258967819	12.699	0.37047	12.699	12.582	12.952	0	0.033633	-0.00012391	NaN	5.2969	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123030	+		10586	21714	5953	5953							0.018421471064584694
GAFPTPTRRDA	11	Unmodified	_GAFPTPTRRDA_					0	0	0			REV__ENST00000502296.5_1_5:179125418-179125673:+|nuORF	REV__ENST00000502296.5_1_5:179125418-179125673:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	594.809636	1187.60472	-0.024221	-1.4407E-05	0.54406	0.00032361	0.51984	0.00030921	594.810009835773	12.734	0.41639	12.666	12.548	12.965	-0.067496	0.0013067	0.00013902	NaN	5.2969	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133220	+		10587	21714	5953	5953							0.018421471064584694
GAFRVVCD	8	Unmodified	_GAFRVVCD_					0	0	0			REV__nc|ENSG00000172046|O94966-4|USP19	REV__nc|ENSG00000172046|O94966-4|USP19	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.7111511230469	2	433.713088	865.411622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.41	1	55.481	54.981	55.981	0.070885								0	0	0	0.30279	1	13229	13229		28.487	0	1		+		10588	17688	5954	5954	13735	13735					-0.026466862142683567
GAFYKGFIK	9	Unmodified	_GAFYKGFIK_					0	0	0		ENST00000475315.5_1_3:180630338-180665710:+|nuORF;ENST00000479176.5_1_3:180630473-180665760:+|nuORF;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1	ENST00000475315.5_1_3:180630338-180665710:+|nuORF	ENST00000475315.5_1_3:180630338-180665710:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7903442382812	2	515.789653	1029.56475	0.16711	8.6195E-05	0.53459	0.00027574	0.7017	0.00036193	515.7896899192775	41.299	0.67531	41.299	40.902	41.578	0					74	24	4	0	0	0	0.03069	2	8835	8835;8887		60.074	23.947	1	3477400			10589	2565	5955	5955	13736;13737	13736					0.051152521738458745
GAFYKGFIK	9	Unmodified	_GAFYKGFIK_					0	0	0		ENST00000475315.5_1_3:180630338-180665710:+|nuORF;ENST00000479176.5_1_3:180630473-180665760:+|nuORF;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1	ENST00000475315.5_1_3:180630338-180665710:+|nuORF	ENST00000475315.5_1_3:180630338-180665710:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7902221679688	2	515.789653	1029.56475	0.30493	0.00015728	0.39474	0.0002036	0.69967	0.00036088	515.7898322369872	40.901	0.82036	40.993	40.693	41.513	0.09267					90	30	4	0	0	0	0.03069	3	8726	8726;8777;8828		60.074	23.947	1	3834500			10590	2565	5955	5955	13738;13739;13740	13738					0.051152521738458745
GAFYKGFIK	9	Unmodified	_GAFYKGFIK_					0	0	0		ENST00000475315.5_1_3:180630338-180665710:+|nuORF;ENST00000479176.5_1_3:180630473-180665760:+|nuORF;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1	ENST00000475315.5_1_3:180630338-180665710:+|nuORF	ENST00000475315.5_1_3:180630338-180665710:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.789794921875	2	515.789653	1029.56475	0.045018	2.322E-05	0.73951	0.00038143	0.78453	0.00040465	515.7898989840963	40.82	0.83871	40.919	40.641	41.48	0.099407					92	30	4	0	0	0	0.03069	3	8705	8705;8755;8805		60.074	23.947	1	4372500			10591	2565	5955	5955	13741;13742;13743	13741					0.051152521738458745
GAFYKGFVK	9	Unmodified	_GAFYKGFVK_					0	0	0		ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.781494140625	2	508.781828	1015.5491	0.43609	0.00022187	-0.18285	-9.3033E-05	0.25324	0.00012884	508.78156837023045	36.311	0.55816	36.394	36.171	36.729	0.082355					32	19	2	0	0	0	0.047483	1	7356	7356		53.833	30.043	1	632800			10592	3417	5956	5956	13744	13744					0.04194965656813565
GAFYKGFVK	9	Unmodified	_GAFYKGFVK_					0	0	0		ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7821350097656	2	508.781828	1015.5491	0.66413	0.0003379	-0.51782	-0.00026346	0.14632	7.4442E-05	508.7814402390738	36.33	0.61372	36.416	36.17	36.783	0.08625					40	21	3	0	0	0	0.047483	2	7351	7351;7396		53.833	38.584	1	502590			10593	3417	5956	5956	13745;13746	13745					0.04194965656813565
GAFYKGFVK	9	Unmodified	_GAFYKGFVK_					0	0	0		ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	508.781828	1015.5491	0.41905	0.00021321	6.1469	0.0031275	6.566	0.0033407	508.7816448914101	36.448	0.70195	36.448	36.142	36.844	0	0.028358	0.0065695	NaN	53.833	71	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	687520			10594	3417	5956	5956							0.04194965656813565
GAGLADGEVNV	11	Unmodified	_GAGLADGEVNV_					0	0	0			REV__nc|ENSG00000115902|P43007-2|SLC1A4	REV__nc|ENSG00000115902|P43007-2|SLC1A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.634521484375	2	501.248546	1000.48254	0.2703	0.00013549	1.0804	0.00054157	1.3507	0.00067705	501.24911582088555	94.375	0.44604	94.457	94.302	94.748	0.082779					54	38	2	0	0	0	0.33149	1	25204	25204		2.7352	0.89096	1	131940	+		10595	14900	5957	5957	13747	13747					-0.0176831469575518
GAGSWNKSRF	10	Unmodified	_GAGSWNKSRF_					0	0	0		ENSG00000158113|ENST00000339777|LRRC43	ENSG00000158113|ENST00000339777|LRRC43	ENSG00000158113|ENST00000339777|LRRC43	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2791137695312	2	555.277972	1108.54139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.29	1	116.26	115.76	116.76	-0.022781								0	0	0	0.37739	1	30128	30128		3.2813	0.97858	1				10596	5340	5958	5958	13748	13748					-0.008537936107813948
GAIELLQI	8	Unmodified	_GAIELLQI_					0	0	0		ENST00000582136.5_1_17:73110273-73110480:+|nuORF	ENST00000582136.5_1_17:73110273-73110480:+|nuORF	ENST00000582136.5_1_17:73110273-73110480:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.7501220703125	2	428.760561	855.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.57	1	70.545	70.045	71.045	-0.024872								0	0	0	0.33432	1	17879	17879		21.747	2.3076	1				10597	12086	5959	5959	13749	13749					0.07303570528563341
GAIGKAYKK	9	Unmodified	_GAIGKAYKK_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.2872009277344	2	468.287277	934.560001	-0.31169	-0.00014596	0.10703	5.0122E-05	-0.20466	-9.5838E-05	468.2871882438248	12.87	0.3386	12.87	12.751	13.09	0					23	11	3	0	0	0	0.13748	1	257	257		32.786	10.049	1	133500			10598	2058	5960	5960	13750	13750					0.09010368031078997
GAIGKAYKK	9	Unmodified	_GAIGKAYKK_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2872619628906	2	468.287277	934.560001	-0.23268	-0.00010896	0.11025	5.1628E-05	-0.12243	-5.7333E-05	468.2872333040598	12.922	0.36865	12.823	12.673	13.042	-0.099291					25	12	3	0	0	0	0.12642	1	270	270		34.402	12.655	1	123790			10599	2058	5960	5960	13751	13751					0.09010368031078997
GAIGKAYKK	9	Unmodified	_GAIGKAYKK_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.2872009277344	2	468.287277	934.560001	-0.21243	-9.948E-05	-0.061755	-2.8919E-05	-0.27419	-0.0001284	468.28720464821333	12.895	0.29082	12.828	12.702	12.993	-0.067495					19	9	3	0	0	0	0.23767	1	271	271		18.146	6.5061	1	133070			10600	2058	5960	5960	13752	13752					0.09010368031078997
GAIKVFVNK	9	Unmodified	_GAIKVFVNK_					0	0	0		nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44	nc|ENSG00000131725|Q5JSH3-4|WDR44	nc|ENSG00000131725|Q5JSH3-4|WDR44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.3027648925781	2	488.302927	974.591301	0.45593	0.00022263	-0.12092	-5.9043E-05	0.33502	0.00016359	488.3025865773679	29.683	0.55701	29.683	29.413	29.97	0					40	19	3	0	0	0	0.03069	1	5363	5363		60.074	36.053	1	297580			10601	3585	5961	5961	13753	13753					0.10298941065184408
GAIKVFVNK	9	Unmodified	_GAIKVFVNK_					0	0	0		nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44	nc|ENSG00000131725|Q5JSH3-4|WDR44	nc|ENSG00000131725|Q5JSH3-4|WDR44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.30291748046875	2	488.302927	974.591301	0.3353	0.00016373	-0.070872	-3.4607E-05	0.26442	0.00012912	488.3026389041733	29.65	0.75964	29.662	29.272	30.032	0.012266					45	25	3	0	0	0	0.075169	1	5351	5351		53.833	23.196	1	223370			10602	3585	5961	5961	13754	13754					0.10298941065184408
GAIKVFVNK	9	Unmodified	_GAIKVFVNK_					0	0	0		nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44	nc|ENSG00000131725|Q5JSH3-4|WDR44	nc|ENSG00000131725|Q5JSH3-4|WDR44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.3027648925781	2	488.302927	974.591301	0.08793	4.2937E-05	0.16331	7.9747E-05	0.25124	0.00012268	488.30278482825554	29.674	0.48828	29.687	29.454	29.943	0.013474					44	16	4	0	0	0	0.075169	1	5353	5353		62.573	31.936	1	273820			10603	3585	5961	5961	13755	13755					0.10298941065184408
GALDVSFNK	9	Unmodified	_GALDVSFNK_					0	0	0		ENSG00000198612|ENST00000354371|COPS8;nc|ENSG00000198612|Q99627-2|COPS8;ENST00000465362.1_1_2:238005439-238006382:+|nuORF	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.7508239746094	2	475.750724	949.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.025	1	42.025	41.525	42.525	0								0	0	0	0.11728	1	9109	9109		42.312	19.576	1				10604	8095	5962	5962	13756	13756					0.010131945178159185
GALKYEGSTK	10	Unmodified	_GALKYEGSTK_					0	0	0			REV__ENSG00000151287|ENST00000376032|TEX30	REV__ENSG00000151287|ENST00000376032|TEX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2905883789062	2	527.282389	1052.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.845	1	47.845	47.345	48.345	0								0	0	0	0.28363	1	10898	10898		29.841	0.759	1		+		10605	16533	5963	5963	13757	13757					0.0260513523503505
GALLPVLLPV	10	Unmodified	_GALLPVLLPV_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7481384277344	2	496.331153	990.647754	0.39312	0.00019512	0.085924	4.2647E-05	0.47905	0.00023777	496.3311643584392	67.341	0.56467	67.419	67.15	67.715	0.078041					36	19	3	0	0	0	0.3198	1	16962	16962		4.3292	2.0265	1	283600	+		10606	23262	5964	5964	13758	13758					0.15205568901842526
GALLPVLLPV	10	Unmodified	_GALLPVLLPV_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	496.331153	990.647754	0.38253	0.00018986	0.29305	0.00014545	0.67557	0.00033531	496.33117766887096	67.412	0.51656	67.412	67.106	67.623	0	0.0035693	6.5037E-05	NaN	4.3292	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204630	+		10607	23262	5964	5964							0.15205568901842526
GALPMFELV	9	Unmodified	_GALPMFELV_					0	0	0		nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;nc|ENSG00000168397|Q9Y4P1-4|ATG4B;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;ENST00000460211.5_1_2:242607386-242610957:+|nuORF;ENST00000475693.1_1_2:242607884-242611676:+|nuORF	nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENST00000475693.1_1_2:242607884-242611676:+|nuORF	nc|ENSG00000168397|Q9Y4P1-6|ATG4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2501525878906	2	488.762246	975.50994	0.11033	5.3926E-05	2.8603	0.001398	2.9707	0.0014519	488.7632293687102	18.19	0.48771	18.073	17.663	18.151	-0.11739					26	16	2	0	0	0	0.25811	1	1841	1841		5.2307	0.47466	1	42129			10608	6272;10939	5965	5965	13759	13759					0.02120497310920655
GALSKHTKKK	10	Unmodified	_GALSKHTKKK_					0	0	0		nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-4|TMTC4;ENST00000478272.1_1_13:101287253-101288829:-|nuORF	nc|ENSG00000125247|Q5T4D3-2|TMTC4	nc|ENSG00000125247|Q5T4D3-2|TMTC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.816650390625	2	549.343115	1096.67168	0.44765	0.00024591	-0.0073805	-4.0544E-06	0.44027	0.00024186	549.3429110418592	21.626	0.25649	21.577	21.405	21.661	-0.049377					12	8	2	0	0	0	0.31958	1	2855	2855		5.2969	2.3016	1	33815			10609	3194	5966	5966	13760	13760					0.1272080238820763
GALVACFLH	9	Unmodified	_GALVACFLH_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2327880859375	2	465.746931	929.479308	-0.032158	-1.4977E-05	1.9704	0.00091771	1.9383	0.00090273	465.74804377905224	17.359	0.41705	17.359	17.151	17.568	0					20	14	2	0	0	0	0.25811	1	1628	1628		5.2307	0	1	35838	+		10610	16918	5967	5967	13761	13761					0.011747637165285596
GALVTYIASL	10	Unmodified	_GALVTYIASL_					0	0	0			REV__ENSG00000140284|ENST00000267842|SLC27A2	REV__ENSG00000140284|ENST00000267842|SLC27A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.3194580078125	2	504.292225	1006.5699	0.30186	0.00015223	1.4854	0.00074906	1.7872	0.00090129	504.2933402750434	80.878	0.82036	80.878	80.657	81.478	0					57	39	2	0	0	0	0.10907	1	21034	21034		68.081	5.508	1	324050	+		10611	16026	5968	5968	13762	13762					0.06687511245786482
GAMLATLHPS	10	Unmodified	_GAMLATLHPS_					0	0	0			REV__nc|ENSG00000143147|Q8N6U8-3|GPR161	REV__nc|ENSG00000143147|Q8N6U8-3|GPR161	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.78106689453125	2	499.260402	996.506251	0.17613	8.7936E-05	0.89614	0.00044741	1.0723	0.00053535	499.26085722257415	26.036	0.3355	25.997	25.871	26.206	-0.038671					17	11	2	0	0	0	0.31847	1	4297	4297		6.7232	1.4925	1	75430	+		10612	16151	5969	5969	13763	13763					0.007858275370836054
GAMLATLHPS	10	Unmodified	_GAMLATLHPS_					0	0	0			REV__nc|ENSG00000143147|Q8N6U8-3|GPR161	REV__nc|ENSG00000143147|Q8N6U8-3|GPR161	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	499.260402	996.506251	0.21101	0.00010535	1.3394	0.00066871	1.5504	0.00077406	499.2608087453672	26.066	0.39572	26.066	25.846	26.242	0	0.03464	0.00027111	NaN	6.7232	19	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45470	+		10613	16151	5969	5969							0.007858275370836054
GANEVLLVV	9	Unmodified	_GANEVLLVV_					0	0	0		ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.26373291015625	2	457.271293	912.528032	0.11428	5.2256E-05	4.1118	0.0018802	4.226	0.0019324	457.2739887674371	70.023	0.72836	70.001	69.489	70.217	-0.022087					68	26	3	0	0	0	0.18208	1	17623	17623		26.268	2.2476	1	267330			10614	2779	5970	5970	13764	13764					0.06826955557301062
GAPAITLLI	9	Unmodified	_GAPAITLLI_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000556217.5_1_14:21837875-21852161:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7784423828125	2	434.778754	867.542954	0.00092753	4.0327E-07	-0.041445	-1.8019E-05	-0.040517	-1.7616E-05	434.7786698779474	74.776	0.84126	74.828	74.612	75.454	0.052368					64	30	3	0	0	0	0.10075	1	19164	19164		38.151	0	1	1247600			10615	1422	5971	5971	13765	13765					0.10388447425293634
GAPARKAAVA	10	Unmodified	_GAPARKAAVA_					0	0	0		ENSG00000187391|ENST00000354212|MAGI2;nc|ENSG00000187391|Q86UL8-2|MAGI2	ENSG00000187391|ENST00000354212|MAGI2	ENSG00000187391|ENST00000354212|MAGI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.748291015625	2	456.274701	910.534849	0.018125	8.2702E-06	-0.062441	-2.849E-05	-0.044316	-2.022E-05	456.274639690387	17.803	0.46822	17.743	17.588	18.056	-0.060429					29	16	3	0	0	0	0.31847	1	1770	1770		6.7232	0	1	36678			10616	7677	5972	5972	13766	13766					0.07600313228499544
GAPSPSQTITN	11	Unmodified	_GAPSPSQTITN_					0	0	0			REV__ENST00000423582.5_1_19:37095760-37096141:+|nuORF	REV__ENST00000423582.5_1_19:37095760-37096141:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2930908203125	2	536.767103	1071.51965	0.7205	0.00038674	-4.3812	-0.0023517	-3.6607	-0.0019649	536.7645147300782	37.026	0.10965	37.119	37.06	37.17	0.093014					5	3	2	0	0	0	0.28652	1	7563	7563		23.79	5.6434	1	57755	+		10617	20883	5973	5973	13767	13767					-0.01324643149973781
GAPVKRVR	8	Unmodified	_GAPVKRVR_					0	0	0			REV__ENST00000513724.1_1_4:47916222-47916543:+|nuORF	REV__ENST00000513724.1_1_4:47916222-47916543:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7433166503906	2	441.785236	881.555919	-0.17032	-7.5244E-05	0.46844	0.00020695	0.29813	0.00013171	441.7852973493838	12.984	0.21635	12.984	12.874	13.09	0					13	7	2	0	0	0	0.34434	1	262	262		0.79363	0.10326	1	34380	+		10618	21827	5974	5974	13768	13768					0.11040323328040813
GAPVKRVR	8	Unmodified	_GAPVKRVR_					0	0	0			REV__ENST00000513724.1_1_4:47916222-47916543:+|nuORF	REV__ENST00000513724.1_1_4:47916222-47916543:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.74322509765625	2	441.785236	881.555919	-0.22302	-9.8528E-05	0.81769	0.00036124	0.59466	0.00026271	441.78549667129926	13.028	0.36432	12.96	12.851	13.215	-0.067496					14	12	2	0	0	0	0.34434	1	275	275		0.79363	0.10326	1	28181	+		10619	21827	5974	5974	13769	13769					0.11040323328040813
GAPVKRVR	8	Unmodified	_GAPVKRVR_					0	0	0			REV__ENST00000513724.1_1_4:47916222-47916543:+|nuORF	REV__ENST00000513724.1_1_4:47916222-47916543:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	441.785236	881.555919	-0.20994	-9.2747E-05	0.49949	0.00022067	0.28955	0.00012792	441.78540273547196	13.04	0.2564	12.941	12.841	13.097	-0.099291	-0.020761	-4.3627E-05	NaN	0.79363	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32043	+		10620	21827	5974	5974							0.11040323328040813
GAQVIILRSF	10	Unmodified	_GAQVIILRSF_					0	0	0		ENST00000530124.5_2_11:62201034-62201283:-|nuORF	ENST00000530124.5_2_11:62201034-62201283:-|nuORF	ENST00000530124.5_2_11:62201034-62201283:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7549438476562	2	552.332216	1102.64988	0.031857	1.7596E-05	3.2812	0.0018123	3.3131	0.0018299	552.3339338200085	27.885	0.1471	27.88	27.793	27.94	-0.0042572					6	4	2	0	0	0	0.31847	1	4807	4807		6.7232	2.3939	1	45374			10621	11613	5975	5975	13770	13770					0.10265997639658053
GARGRGLSRPP	11	Unmodified	_GARGRGLSRPP_					0	0	0			REV__ENST00000263620.3_19:974543-975197:+|nuORF	REV__ENST00000263620.3_19:974543-975197:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.2957763671875	2	562.325788	1122.63702	-0.17413	-9.7915E-05	0.66807	0.00037567	0.49394	0.00027775	562.3255768090484	12.72	0.35658	12.653	12.463	12.819	-0.067495					25	11	3	0	0	0	0.33324	1	155	155		1.1933	0	1	55208	+		10622	19622	5976	5976	13771	13771					0.08060979300148574
GARIYHTI	8	Unmodified	_GARIYHTI_					0	0	0		ENSG00000008394|ENST00000396210|MGST1;ENST00000539708.5_1_12:16513351-16516972:+|nuORF	ENSG00000008394|ENST00000396210|MGST1	ENSG00000008394|ENST00000396210|MGST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7607421875	2	465.761426	929.5083	-0.014039	-6.5389E-06	-0.64695	-0.00030133	-0.66099	-0.00030786	465.7607569793878	30.707	0.44526	30.707	30.587	31.033	0					27	15	3	0	0	0	0.27124	1	5667	5667		34.102	8.7031	1	221030			10623	396	5977	5977	13772	13772					0.040726243371977944
GARIYHTI	8	Unmodified	_GARIYHTI_					0	0	0		ENSG00000008394|ENST00000396210|MGST1;ENST00000539708.5_1_12:16513351-16516972:+|nuORF	ENSG00000008394|ENST00000396210|MGST1	ENSG00000008394|ENST00000396210|MGST1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	465.761426	929.5083	0.012752	5.9394E-06	-0.87671	-0.00040834	-0.86396	-0.0004024	465.76077821761726	30.742	0.43966	30.769	30.505	30.945	0.027157	0.01565	-0.00013449	NaN	34.102	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234300			10624	396	5977	5977							0.040726243371977944
GARKRPFVCI	10	Unmodified	_GARKRPFVCI_					0	0	0			REV__ENST00000368184.7_2_1:157648303-157648486:-|nuORF	REV__ENST00000368184.7_2_1:157648303-157648486:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8316650390625	2	573.83186	1145.64917	0.41335	0.0002372	-1.1113	-0.00063772	-0.69797	-0.00040052	573.8309761773982	86.677	0.83496	86.764	86.398	87.233	0.08709					65	34	2	0	0	0	0.39745	1	22894	22894		3.9444	0.3479	1	209120	+		10625	20330	5978	5978	13773	13773					0.08216879718975179
GARRKMKP	8	Unmodified	_GARRKMKP_					0	0	0		nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000366362.3_1_12:2973410-2973858:-|nuORF	nc|ENSG00000111206|Q08050-2|FOXM1	nc|ENSG00000111206|Q08050-2|FOXM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2834167480469	2	472.284546	942.554539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.938	1	93.027	92.527	93.527	0.089195								0	0	0	0.36486	1	24735	24735		7.9102	3.5809	1				10626	2351	5979	5979	13774	13774					0.08096365967628572
GASAGALHCV	10	Unmodified	_GASAGALHCV_					0	0	0		ENSG00000100344|ENST00000216180|PNPLA3;nc|ENSG00000100344|Q9NST1-2|PNPLA3	ENSG00000100344|ENST00000216180|PNPLA3	ENSG00000100344|ENST00000216180|PNPLA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.56878662109375	2	443.215995	884.417436	-0.062844	-2.7854E-05	1.0417	0.00046168	0.97882	0.00043383	443.21647887362803	15.787	1.0214	15.677	15.23	16.252	-0.10981					64	34	3	0	0	0	0.32009	1	1295	1295		3.9444	1.0552	1	114030			10627	1573	5980	5980	13775	13775					-0.029395877025990558
GASEIILRK	9	Unmodified	_GASEIILRK_					0	0	0		nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4	nc|ENSG00000058668|P23634|ATP2B4	nc|ENSG00000058668|P23634|ATP2B4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.8031921386719	2	493.803291	985.59203	0.29789	0.0001471	-0.087669	-4.3291E-05	0.21022	0.00010381	493.80315563696445	27.124	0.4827	27.124	26.925	27.408	0					39	16	3	0	0	0	0.015924	2	4569	4569;4625		70.332	18.702	1	147950			10628	735	5981	5981	13776;13777	13776					0.09865735714231505
GASEIILRK	9	Unmodified	_GASEIILRK_					0	0	0		nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4	nc|ENSG00000058668|P23634|ATP2B4	nc|ENSG00000058668|P23634|ATP2B4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.80340576171875	2	493.803291	985.59203	0.28764	0.00014204	-0.078542	-3.8784E-05	0.2091	0.00010325	493.8031758031781	27.174	0.41599	27.162	26.928	27.344	-0.011562					26	14	2	0	0	0	0.026579	1	4569	4569		61.602	9.9721	1	124100			10629	735	5981	5981	13778	13778					0.09865735714231505
GATERRRKKKV	11	Unmodified	_GATERRRKKKV_					0	0	0			REV__ENST00000484530.5_1_3:55545064-55640922:-|nuORF	REV__ENST00000484530.5_1_3:55545064-55640922:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.7532653808594	3	443.612626	1327.81605	0.62902	0.00027904	1.484	0.00065831	2.113	0.00093735	443.9476133476633	47.565	0.23968	47.608	47.48	47.72	0.04332					11	8	2	0	0	0	0.33296	1	10783	10783		2.6312	2.5364	1	156850	+		10630	21533	5982	5982	13779	13779					0.16525443868181355
GATKKKDQV	9	Unmodified	_GATKKKDQV_					0	0	0			REV__ENSG00000106483|ENST00000436072|SFRP4	REV__ENSG00000106483|ENST00000436072|SFRP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7850646972656	2	487.785099	973.555644	0.52802	0.00025756	-0.12635	-6.1631E-05	0.40167	0.00019593	487.78500013923133	20.544	0.56982	20.434	20.238	20.808	-0.11003					39	20	3	0	0	0	0.22215	1	2618	2618		20.415	1.1575	1	302680	+		10631	14525	5983	5983	13780	13780					0.0678085881751258
GAVTAVKPA	9	Unmodified	_GAVTAVKPA_					0	0	0			REV__IDH3G|p.L3P|1|0.56|ENSG00000067829|chrX:153794319-153794319|A/G|missense_variant	REV__IDH3G|p.L3P|1|0.56|ENSG00000067829|chrX:153794319-153794319|A/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.85467529296875	2	407.245078	812.475603	-0.30857	-0.00012566	0.27608	0.00011243	-0.032492	-1.3232E-05	407.2451259998858	27.598	0.46322	27.586	27.344	27.808	-0.011562					20	15	2	0	0	0	0.24848	1	4719	4719		2.9952	1.151	1	51475	+		10632	22767	5984	5984	13781	13781					0.06186417214314588
GAVTDKEK	8	Unmodified	_GAVTDKEK_					0	0	0		ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2293395996094	2	424.229625	846.444697	-0.30163	-0.00012796	0.25666	0.00010888	-0.044968	-1.9077E-05	424.22968484353714	15.468	0.74859	15.468	15.232	15.981	0					48	25	2	0	0	0	0.39068	1	1106	1106		20.454	1.1966	1	956590			10633	2953	5985	5985	13782	13782					0.015332191094216796
GAVTDKEK	8	Unmodified	_GAVTDKEK_					0	0	0		ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.2292785644531	2	424.229625	846.444697	-0.30279	-0.00012845	0.15275	6.4801E-05	-0.15004	-6.365E-05	424.2296778606707	15.563	1.048	15.453	15.204	16.252	-0.10981					83	35	5	0	0	0	0.42894	1	1186	1186		13.042	0.80181	1	1064500			10634	2953	5985	5985	13783	13783					0.015332191094216796
GAVTDKEK	8	Unmodified	_GAVTDKEK_					0	0	0		ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.2294616699219	2	424.229625	846.444697	-0.26819	-0.00011377	0.20525	8.7071E-05	-0.062944	-2.6703E-05	424.2296839414143	15.537	0.98629	15.472	15.247	16.233	-0.064414					72	33	4	0	0	0	0.35947	1	1112	1112		24.021	0.23079	1	1155400			10635	2953	5985	5985	13784	13784					0.015332191094216796
GAVTGSVEK	9	Unmodified	_GAVTGSVEK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2295837402344	2	424.229625	846.444697	-0.30163	-0.00012796	0.25666	0.00010888	-0.044968	-1.9077E-05	424.22968484353714	15.468	0.74859	15.468	15.232	15.981	0					48	25	2	0	0	0	0.0073901	2	1058	1011;1058		83.429	17.294	1	956590			10636	4787	5986	5986	13785;13786	13786					0.015332191094216796
GAVTGSVEK	9	Unmodified	_GAVTGSVEK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.2296142578125	2	424.229625	846.444697	-0.30279	-0.00012845	0.15275	6.4801E-05	-0.15004	-6.365E-05	424.2296778606707	15.563	1.048	15.453	15.204	16.252	-0.10981					83	35	5	0	0	0	0.00012746	2	1075	1075;1126		136.39	33.039	1	1064500			10637	4787	5986	5986	13787;13788	13787					0.015332191094216796
GAVTGSVEK	9	Unmodified	_GAVTGSVEK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.2296447753906	2	424.229625	846.444697	-0.26819	-0.00011377	0.20525	8.7071E-05	-0.062944	-2.6703E-05	424.2296839414143	15.537	0.98629	15.472	15.247	16.233	-0.064414					72	33	4	0	0	0	0.00019464	1	1065	1065		133.05	33.253	1	1155400			10638	4787	5986	5986	13789	13789					0.015332191094216796
GAWKTISNGFG	11	Unmodified	_GAWKTISNGFG_					0	0	0		ENSG00000132155|ENST00000251849|RAF1;nc|ENSG00000132155|P04049-2|RAF1	ENSG00000132155|ENST00000251849|RAF1	ENSG00000132155|ENST00000251849|RAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.763916015625	2	569.288005	1136.56146	0.37442	0.00021315	0.23397	0.0001332	0.60839	0.00034635	569.2880758042563	29.034	1.2166	29.034	28.729	29.945	0					98	43	4	0	0	0	0.32951	1	5374	5374		8.7454	2.0222	1	859900			10639	3612	5987	5987	13790	13790					-0.001360426708288287
GAWPPRLW	8	Unmodified	_GAWPPRLW_					0	0	0			REV__ENST00000462807.5_1_1:228327956-228334566:+|nuORF	REV__ENST00000462807.5_1_1:228327956-228334566:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2829895019531	2	491.766512	981.518471	-0.045187	-2.2221E-05	0.62017	0.00030498	0.57498	0.00028276	491.76677844136833	13.503	0.35759	13.435	13.302	13.66	-0.067495					20	12	2	0	0	0	0.34218	1	444	444		9.3474	0.75416	1	47431	+		10640	21237	5988	5988	13791	13791					0.026972320624167878
GCGKAGGG	8	Unmodified	_GCGKAGGG_					0	0	0			REV__ENST00000264501.8_2_4:123073488-123075213:+|nuORF	REV__ENST00000264501.8_2_4:123073488-123075213:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3558349609375	1	606.266421	605.259145	0.50216	0.00030444	-0.95643	-0.00057985	-0.45427	-0.00027541	606.2643777530287	75.144	0.52243	75.144	75.069	75.592	0					20	18	2	0	0	0	0.34445	1	19278	19278		0	0	1	89583	+		10641	19639	5989	5989	13792	13792					-0.05927461891030816
GCGKAGGG	8	Unmodified	_GCGKAGGG_					0	0	0			REV__ENST00000264501.8_2_4:123073488-123075213:+|nuORF	REV__ENST00000264501.8_2_4:123073488-123075213:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.355224609375	1	606.266421	605.259145	0.53995	0.00032735	-1.2147	-0.00073646	-0.67479	-0.00040911	606.2641648359561	75.14	0.29796	75.193	75.051	75.349	0.052368					15	10	2	0	0	0	0.34437	1	19256	19256		0.69038	0	1	99760	+		10642	19639	5989	5989	13793	13793					-0.05927461891030816
GCKFMEKFNF	10	Unmodified	_GCKFMEKFNF_					0	0	0			REV__ENSG00000081800|ENST00000194130|SLC13A1	REV__ENSG00000081800|ENST00000194130|SLC13A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.52825927734375	3	417.528072	1249.56239	0.15167	6.3327E-05	0.1834	7.6576E-05	0.33507	0.0001399	417.52822414324754	62.192	0.66636	62.184	61.931	62.597	-0.0085564					58	24	3	0	0	0	0.39745	1	15309	15309		1.9064	0	1	438690	+		10643	13907	5990	5990	13794	13794					-0.05241287617764101
GCKFMEKFNF	10	Unmodified	_GCKFMEKFNF_					0	0	0			REV__ENSG00000081800|ENST00000194130|SLC13A1	REV__ENSG00000081800|ENST00000194130|SLC13A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	417.528072	1249.56239	-0.012182	-5.0863E-06	0.2644	0.0001104	0.25222	0.00010531	417.52824541669423	62.193	0.58041	62.193	61.945	62.526	0	-0.0063135	0.00015626	NaN	1.9064	55	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465270	+		10644	13907	5990	5990							-0.05241287617764101
GCKFMEKFNF	10	Unmodified	_GCKFMEKFNF_					0	0	0			REV__ENSG00000081800|ENST00000194130|SLC13A1	REV__ENSG00000081800|ENST00000194130|SLC13A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	417.528072	1249.56239	0.039972	1.669E-05	-0.12932	-5.3996E-05	-0.08935	-3.7306E-05	417.5282848636807	62.125	0.62002	62.222	61.952	62.572	0.096985	0.022159	-0.00033691	NaN	1.9064	55	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	491760	+		10645	13907	5990	5990							-0.05241287617764101
GCKFMEKFNF	10	Unmodified	_GCKFMEKFNF_					0	0	0			REV__ENSG00000081800|ENST00000194130|SLC13A1	REV__ENSG00000081800|ENST00000194130|SLC13A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	417.528072	1249.56239	0.15167	6.3327E-05	0.1834	7.6576E-05	0.33507	0.0001399	417.52822414324754	62.192	0.66636	62.184	61.931	62.597	-0.0085564	-0.015845	5.4801E-05	NaN	1.9064	58	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438690	+		10646	13907	5990	5990							-0.05241287617764101
GDAVYPII	8	Unmodified	_GDAVYPII_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-3|THADA	REV__nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.73480224609375	2	424.231636	846.448719	0.0011423	4.8461E-07	2.197	0.00093203	2.1981	0.00093252	424.2315960134909	59.696	0.96701	59.685	59.28	60.247	-0.011486					91	33	4	0	0	0	0.32313	1	14495	14495		28.173	13.592	1	1697600	+		10647	14904	5991	5991	13795	13795					0.01935308603140129
GDDDEDELT	9	Unmodified	_GDDDEDELT_					0	0	0			REV__ENSG00000188786|ENST00000373036|MTF1	REV__ENSG00000188786|ENST00000373036|MTF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2768859863281	2	504.685641	1007.35673	0.43401	0.00021904	-0.92482	-0.00046674	-0.49081	-0.00024771	504.6852200483737	73.107	0.57611	73.078	72.873	73.449	-0.029305					25	20	2	0	0	0	0.25938	1	18755	18755		1.8442	0	1	122840	+		10648	18570	5992	5992	13796	13796					-0.14665491062510227
GDEPFVIIQ	9	Unmodified	_GDEPFVIIQ_					0	0	0			REV__ENSG00000169814|ENST00000643237|BTD	REV__ENSG00000169814|ENST00000643237|BTD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.28240966796875	2	509.266207	1016.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.994	1	22.949	22.449	23.449	-0.044867								0	0	0	0.2362	1	3311	3311		10.824	0.024421	1		+		10649	17541	5993	5993	13797	13797					0.010263478320553077
GDFLPPDEL	9	Unmodified	_GDFLPPDEL_					0	0	0		ENSG00000105705|ENST00000247001|SUGP1;ENST00000592188.1_1_19:19387459-19391209:-|nuORF;ENST00000589144.5_1_19:19387459-19413207:-|nuORF;ENST00000588731.6_1_19:19387459-19414804:-|nuORF	ENSG00000105705|ENST00000247001|SUGP1	ENSG00000105705|ENST00000247001|SUGP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.76837158203125	2	501.742565	1001.47058	0.53229	0.00026707	-1.314	-0.0006593	-0.78172	-0.00039222	501.7418453534826	85.193	0.59386	85.274	85.021	85.615	0.080887					35	22	2	0	0	0	0.1854	1	22372	22372		32.305	2.0807	1	189280			10650	2012	5994	5994	13798	13798					-0.03009931438964486
GDHGKHVSPL	10	Unmodified	_GDHGKHVSPL_					0	0	0		ENSG00000165591|ENST00000374900|FAAH2	ENSG00000165591|ENST00000374900|FAAH2	ENSG00000165591|ENST00000374900|FAAH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3036499023438	2	523.772522	1045.53049	0.68525	0.00035891	1.3922	0.00072919	2.0774	0.0010881	523.7731858671165	77.171	0.99802	77.171	76.693	77.691	0					59	36	3	0	0	0	0.31642	1	19848	19848		10.8	6.0435	1	593240			10651	5978	5995	5995	13799	13799					0.009548040149411463
GDILHVADHQ	10	Unmodified	_GDILHVADHQ_					0	0	0		ENSG00000204514|ENST00000435989|ZNF814;ZNF587B|p.S183Pfs*39|1|0.05|ENSG00000269343|chr19:57841220-57841221|-/CC|frameshift_variant;ZNF587B|p.G184Qfs*38|1|0.04|ENSG00000269343|chr19:57841221-57841222|-/CA|frameshift_variant;nc|ENSG00000269343|E7ETH6|ZNF587B;ENST00000596248.1_1_19:58319410-58325921:-|nuORF;ENSG00000178935|ENST00000391701|ZNF552;ENSG00000269343|ENST00000594901|ZNF587B	ENSG00000204514|ENST00000435989|ZNF814	ENSG00000204514|ENST00000435989|ZNF814	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7896118164062	2	552.775262	1103.53597	0.012268	6.7815E-06	-0.75435	-0.00041698	-0.74208	-0.0004102	552.7749906995859	13.089	0.35856	13.089	12.977	13.336	0					26	12	4	0	0	0	0.41168	1	372	372		1.3295	0.13619	1	111200			10652	8232	5996	5996	13800	13800					-0.011655171932488884
GDISFQWSGSS	11	Unmodified	_GDISFQWSGSS_					0	0	0			REV__ENSG00000155918|ENST00000367341|RAET1L	REV__ENSG00000155918|ENST00000367341|RAET1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.813720703125	2	585.756735	1169.49892	0.76319	0.00044704	-3.3114	-0.0019397	-2.5482	-0.0014926	585.7546994443372	77.509	0.19529	77.477	77.346	77.542	-0.031334					10	6	2	0	0	0	0.32951	1	20006	20006		9.544	2.2547	1	75087	+		10653	16719	5997	5997	13801	13801					-0.07905233529663747
GDIYDWLKI	9	Unmodified	_GDIYDWLKI_					0	0	0			REV__WDR75|p.K411Mfs*20|1|0.05|ENSG00000115368|chr2:189465196-189465197|-/TGATAATTAACTACATCCAAGACAACTTCTGT|frameshift_variant	REV__WDR75|p.K411Mfs*20|1|0.05|ENSG00000115368|chr2:189465196-189465197|-/TGATAATTAACTACATCCAAGACAACTTCTGT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7948608398438	2	561.795132	1121.57571	0.1272	7.1458E-05	0.078657	4.4189E-05	0.20585	0.00011565	561.7950819873685	69.626	1.2028	69.626	69.147	70.35	0					103	43	4	0	0	0	0.14076	1	17576	17576		32.305	32.305	1	1559300	+		10654	23356	5998	5998	13802	13802					0.01978609757452432
GDKHSPKVVK	10	Unmodified	_GDKHSPKVVK_					0	0	0		CTNND2|p.T1088Rfs*15|1|0.2|ENSG00000169862|chr5:10988190-10988191|TG/-|frameshift_variant;nc|ENSG00000169862|Q9UQB3-2|CTNND2;ENSG00000169862|ENST00000304623|CTNND2	CTNND2|p.T1088Rfs*15|1|0.2|ENSG00000169862|chr5:10988190-10988191|TG/-|frameshift_variant	CTNND2|p.T1088Rfs*15|1|0.2|ENSG00000169862|chr5:10988190-10988191|TG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.291015625	2	547.819473	1093.62439	0.19668	0.00010774	0.019607	1.0741E-05	0.21628	0.00011848	547.819632264679	13.126	0.31491	13.027	12.814	13.129	-0.099291					14	10	2	0	0	0	0.32139	1	289	289		1.3295	0.80477	1	46633			10655	247	5999	5999	13803	13803					0.0813252311722863
GDKVNVAGLV	10	Unmodified	_GDKVNVAGLV_					0	0	0		nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1;ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF	nc|ENSG00000120705|P62495-2|ETF1	nc|ENSG00000120705|P62495-2|ETF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2775573730469	2	486.279649	970.544745	-1.2141	-0.00059039	-1.208	-0.00058742	-2.4221	-0.0011778	486.27901276869096	34.863	0.60535	34.863	34.646	35.251	0					62	21	4	0	0	0	0.24105	1	6899	6899		27.629	2.6378	1	1090200			10656	2959	6000	6000	13804	13804					0.058294564432458174
GDLLSLQV	8	Unmodified	_GDLLSLQV_					0	0	0		ENST00000491770.1_1_7:43988203-43992291:+|nuORF	ENST00000491770.1_1_7:43988203-43992291:+|nuORF	ENST00000491770.1_1_7:43988203-43992291:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.7422790527344	2	422.742368	843.470183	-0.079789	-3.373E-05	-0.076923	-3.2518E-05	-0.15671	-6.6249E-05	422.74226992477895	75.317	0.89125	75.317	75.012	75.903	0					84	31	4	0	0	0	0.016169	2	19326	19326;19375		107.19	0	1	2578200			10657	11185	6001	6001	13805;13806	13805					0.042186936318557855
GDLLSLQV	8	Unmodified	_GDLLSLQV_					0	0	0		ENST00000491770.1_1_7:43988203-43992291:+|nuORF	ENST00000491770.1_1_7:43988203-43992291:+|nuORF	ENST00000491770.1_1_7:43988203-43992291:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.7423095703125	2	422.742368	843.470183	0.0086942	3.6754E-06	-0.13435	-5.6794E-05	-0.12565	-5.3118E-05	422.742246381117	75.308	0.91663	75.36	74.998	75.915	0.052361					94	33	4	0	0	0	0.016169	3	19300	19300;19345;19368		107.19	0	1	2230400			10658	11185	6001	6001	13807;13808;13809	13807					0.042186936318557855
GDLLSLQV	8	Unmodified	_GDLLSLQV_					0	0	0		ENST00000491770.1_1_7:43988203-43992291:+|nuORF	ENST00000491770.1_1_7:43988203-43992291:+|nuORF	ENST00000491770.1_1_7:43988203-43992291:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.7422180175781	2	422.742368	843.470183	0.19132	8.0881E-05	-0.3345	-0.00014141	-0.14318	-6.0528E-05	422.7421519404206	75.371	0.84949	75.339	75.031	75.881	-0.031479					86	31	4	0	0	0	0.016169	2	19328	19328;19377		107.19	0	1	2397300			10659	11185	6001	6001	13810;13811	13810					0.042186936318557855
GDLNAREIK	9	Unmodified	_GDLNAREIK_					0	0	0			REV__ENSG00000134569|ENST00000378623|LRP4	REV__ENSG00000134569|ENST00000378623|LRP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2895202636719	2	508.28018	1014.54581	0.18729	9.5196E-05	0.3856	0.00019599	0.57288	0.00029119	508.28041679234326	21.894	0.51608	21.845	21.574	22.09	-0.049377					28	18	2	0	0	0	0.25779	1	3046	3046		3.2813	0	1	145110	+		10660	15684	6002	6002	13812	13812					0.039116708121468946
GDLVNPTI	8	Unmodified	_GDLVNPTI_					0	0	0			REV__ENST00000545729.5_1_12:26109167-26109638:-|nuORF	REV__ENST00000545729.5_1_12:26109167-26109638:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.7265930175781	2	414.726718	827.438883	0.64568	0.00026778	-0.68039	-0.00028217	-0.034709	-1.4395E-05	414.7262345747531	56.188	0.37735	56.188	55.992	56.37	0					16	13	2	0	0	0	0.20663	1	13482	13482		41.84	0	1	402850	+		10661	22164	6003	6003	13813	13813					0.018261205977637474
GDLVNPTI	8	Unmodified	_GDLVNPTI_					0	0	0			REV__ENST00000545729.5_1_12:26109167-26109638:-|nuORF	REV__ENST00000545729.5_1_12:26109167-26109638:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.7263488769531	2	414.726718	827.438883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.178	1	56.255	55.755	56.755	0.077675								0	0	0	0.21581	1	13465	13465		41.84	0	1		+		10662	22164	6003	6003	13814	13814					0.018261205977637474
GDLVNPTI	8	Unmodified	_GDLVNPTI_					0	0	0			REV__ENST00000545729.5_1_12:26109167-26109638:-|nuORF	REV__ENST00000545729.5_1_12:26109167-26109638:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	414.726718	827.438883	0.64568	0.00026778	-0.68039	-0.00028217	-0.034709	-1.4395E-05	414.7262345747531	56.188	0.37735	56.188	55.992	56.37	0	0.033893	0.00014883	NaN	41.84	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402850	+		10663	22164	6003	6003							0.018261205977637474
GDLVNPTI	8	Unmodified	_GDLVNPTI_					0	0	0			REV__ENST00000545729.5_1_12:26109167-26109638:-|nuORF	REV__ENST00000545729.5_1_12:26109167-26109638:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	414.726718	827.438883	0.78539	0.00032572	-0.93654	-0.00038841	-0.15115	-6.2685E-05	414.7263383092474	56.139	0.38481	56.12	55.942	56.326	-0.019081	-0.033893	-6.363E-05	NaN	41.84	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323540	+		10664	22164	6003	6003							0.018261205977637474
GDPPIFTKP	9	Unmodified	_GDPPIFTKP_					0	0	0		nc|ENSG00000179603|O00222-3|GRM8;GRM8|p.K521Tfs*20|1|0.15|ENSG00000179603|chr7:126533820-126533821|-/GTGG|frameshift_variant;nc|ENSG00000179603|O00222-2|GRM8;ENSG00000179603|ENST00000339582|GRM8	nc|ENSG00000179603|O00222-3|GRM8	nc|ENSG00000179603|O00222-3|GRM8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001708984375	2	486.263468	970.512382	0.15634	7.6022E-05	0.9809	0.00047697	1.1372	0.000553	486.2642033028715	41.251	0.19047	41.341	41.188	41.378	0.090252					10	6	2	0	0	0	0.24311	1	8855	8855		7.2892	0	1	102570			10665	7133	6004	6004	13815	13815					0.025946690402292916
GDSTFESKSYK	11	Unmodified	_GDSTFESKSYK_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.862548828125	3	416.862942	1247.567	-0.13259	-5.5272E-05	-0.19463	-8.1133E-05	-0.32722	-0.0001364	416.8627196512003	19.802	0.63107	19.802	19.461	20.092	0					55	22	3	0	0	0	0.43809	1	2358	2358		6.2344	1.1868	1	119060			10666	6557	6005	6005	13816	13816					-0.046884086696763916
GDSTFESKSYK	11	Unmodified	_GDSTFESKSYK_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.86273193359375	3	416.862942	1247.567	0.26885	0.00011207	-0.71195	-0.00029679	-0.44311	-0.00018472	416.86262608091715	19.98	0.60292	19.864	19.579	20.182	-0.11592					48	20	3	0	0	0	0.44832	1	2413	2413		4.8923	2.4575	1	132250			10667	6557	6005	6005	13817	13817					-0.046884086696763916
GDSTFESKSYK	11	Unmodified	_GDSTFESKSYK_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.9032287597656	3	416.862942	1247.567	0.31118	0.00012972	-0.62218	-0.00025937	-0.311	-0.00012965	416.8626465420115	19.827	0.63462	19.771	19.485	20.119	-0.055693					54	22	3	0	0	0	0.33169	1	2390	2390		6.2344	1.1868	1	124950			10668	6557	6005	6005	13818	13818					-0.046884086696763916
GDTKVSQAVLK	11	Unmodified	_GDTKVSQAVLK_					0	0	0		ENSG00000178878|ENST00000356591|APOLD1;nc|ENSG00000178878|Q96LR9|APOLD1	ENSG00000178878|ENST00000356591|APOLD1	ENSG00000178878|ENST00000356591|APOLD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.7843017578125	2	573.32987	1144.64519	0.28436	0.00016303	-0.77517	-0.00044443	-0.49081	-0.0002814	573.329289794618	42.818	0.45844	42.903	42.704	43.163	0.085197					37	16	3	0	0	0	0.28319	1	9363	9363		32.898	10.123	1	762830			10669	7081	6006	6006	13819	13819					0.0786506870622361
GDTKVSQAVLK	11	Unmodified	_GDTKVSQAVLK_					0	0	0		ENSG00000178878|ENST00000356591|APOLD1;nc|ENSG00000178878|Q96LR9|APOLD1	ENSG00000178878|ENST00000356591|APOLD1	ENSG00000178878|ENST00000356591|APOLD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.7844848632812	2	573.32987	1144.64519	0.022641	1.2981E-05	-0.28682	-0.00016444	-0.26418	-0.00015146	573.3297225744985	42.768	0.51478	42.86	42.633	43.147	0.091362					38	18	3	0	0	0	0.29334	1	9330	9330		29.437	9.8112	1	706230			10670	7081	6006	6006	13820	13820					0.0786506870622361
GDTKVSQAVLK	11	Unmodified	_GDTKVSQAVLK_					0	0	0		ENSG00000178878|ENST00000356591|APOLD1;nc|ENSG00000178878|Q96LR9|APOLD1	ENSG00000178878|ENST00000356591|APOLD1	ENSG00000178878|ENST00000356591|APOLD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	573.32987	1144.64519	0.22117	0.0001268	-0.38552	-0.00022103	-0.16436	-9.423E-05	573.3296512906232	43.007	0.46532	43.007	42.816	43.281	0	0.083685	4.2599E-05	NaN	32.898	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	711250			10671	7081	6006	6006							0.0786506870622361
GDWPITHV	8	Unmodified	_GDWPITHV_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.21051025390625	2	462.732335	923.450116	0.10555	4.8843E-05	0.049729	2.3011E-05	0.15528	7.1854E-05	462.73231574825365	58.312	0.37103	58.312	58.128	58.5	0					18	12	2	0	0	0	0.34218	1	14099	14099		9.3474	0	1	308970	+		10672	13863	6007	6007	13821	13821					-0.014670573081048133
GDWPITHV	8	Unmodified	_GDWPITHV_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.21051025390625	2	462.732335	923.450116	0.58983	0.00027293	-0.15825	-7.3229E-05	0.43158	0.00019971	462.73203946895745	58.404	0.35424	58.39	58.169	58.523	-0.014267					16	12	2	0	0	0	0.34092	1	14148	14148		13.508	0	1	198230	+		10673	13863	6007	6007	13822	13822					-0.014670573081048133
GDWPITHV	8	Unmodified	_GDWPITHV_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	462.732335	923.450116	0.076379	3.5343E-05	0.19464	9.0065E-05	0.27102	0.00012541	462.73227419092893	58.154	0.44321	58.24	58.025	58.468	0.085621	-0.074478	0.00017255	NaN	13.508	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203530	+		10674	13863	6007	6007							-0.014670573081048133
GEAAAEERVR	10	Unmodified	_GEAAAEERVR_					0	0	0			REV__ENST00000606441.1_1_6:3068607-3069069:-|nuORF	REV__ENST00000606441.1_1_6:3068607-3069069:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2987060546875	2	544.278169	1086.54179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.825	1	43.909	43.409	44.409	0.083996								0	0	0	0.34454	1	9650	9650		17.113	3.2068	1		+		10675	22660	6008	6008	13823	13823					0.0019758131841172144
GEALFLFP	8	Unmodified	_GEALFLFP_					0	0	0			REV__ENST00000539698.3_1_16:71560179-71560269:+|nuORF	REV__ENST00000539698.3_1_16:71560179-71560269:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.2539978027344	2	447.242004	892.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.308	1	32.362	31.862	32.862	0.054371								0	0	0	0.35014	1	6136	6136		14.582	0	1		+		10676	22107	6009	6009	13824	13824					0.018918989828080157
GEAPLIIIL	9	Unmodified	_GEAPLIIIL_					0	0	0			REV__ENSG00000114204|ENST00000264677|SERPINI2	REV__ENSG00000114204|ENST00000264677|SERPINI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.79974365234375	2	469.799686	937.584819	0.20956	9.845E-05	0.22287	0.00010471	0.43243	0.00020316	469.7996070328504	88.09	0.86685	88.09	87.765	88.632	0					101	45	3	0	0	0	0.155	1	23321	23321		30.225	0	1	1255300	+		10677	14826	6010	6010	13825	13825					0.11353003113799787
GEAPTAPAPLS	11	Unmodified	_GEAPTAPAPLS_					0	0	0			REV__nc|ENSG00000198373|O00308-4|WWP2	REV__nc|ENSG00000198373|O00308-4|WWP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.31341552734375	2	505.761289	1009.50803	0.26386	0.00013345	-4.1579	-0.0021029	-3.8941	-0.0019695	506.25920467092834	67.812	0.348	67.796	67.593	67.941	-0.016304					18	11	2	0	0	0	0.32557	1	17072	17072		10.8	0	1	196100	+		10678	18819	6011	6011	13826	13826					0.0036515982666287528
GEAQHVLCTQ	10	Unmodified	_GEAQHVLCTQ_					0	0	0			REV__nc|ENSG00000182809|P52943-2|CRIP2	REV__nc|ENSG00000182809|P52943-2|CRIP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.811279296875	2	543.255848	1084.49714	0.25837	0.00014036	0.41778	0.00022696	0.67615	0.00036732	543.2560482803253	14.498	0.5843	14.393	14.185	14.77	-0.10466					31	19	3	0	0	0	0.31958	1	815	815		5.2969	0	1	47298	+		10679	23125	6012	6012	13827	13827					-0.041725658192717674
GEAVPAWREA	10	Unmodified	_GEAVPAWREA_					0	0	0		ENST00000264956.10_2_4:5813500-5814718:+|nuORF	ENST00000264956.10_2_4:5813500-5814718:+|nuORF	ENST00000264956.10_2_4:5813500-5814718:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.8113403320312	2	543.272355	1084.53016	0.26876	0.00014601	-4.1599	-0.0022599	-3.8911	-0.0021139	543.2699327343433	14.739	0.30662	14.673	14.563	14.869	-0.066067					16	10	2	0	0	0	0.31691	1	821	821		9.3831	1.473	1	41286			10680	9034	6013	6013	13828	13828					-0.008726157049068206
GEAYMRLS	8	Unmodified	_GEAYMRLS_					0	0	0		ENST00000551915.5_1_12:83081308-83379891:+|nuORF;TMTC2|p.A737Qfs*4|1|0.28|ENSG00000179104|chr12:83050953-83050953|A/-|frameshift_variant;ENSG00000179104|ENST00000321196|TMTC2	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7237243652344	2	463.723652	925.432752	0.085084	3.9455E-05	0.67928	0.000315	0.76437	0.00035446	463.7238569054736	86.804	0.62403	86.891	86.63	87.254	0.08709					52	25	3	0	0	0	0.43043	1	22870	22870		12.532	0	1	353280			10681	7102	6014	6014	13829	13829					-0.03294720905410031
GEAYMRLS	8	Unmodified	_GEAYMRLS_					0	0	0		ENST00000551915.5_1_12:83081308-83379891:+|nuORF;TMTC2|p.A737Qfs*4|1|0.28|ENSG00000179104|chr12:83050953-83050953|A/-|frameshift_variant;ENSG00000179104|ENST00000321196|TMTC2	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	463.723652	925.432752	0.16827	7.8032E-05	0.70689	0.0003278	0.87517	0.00040584	463.72385366854854	87.04	0.55822	87.04	86.703	87.261	0	0.088499	0.00014984	NaN	12.532	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336710			10682	7102	6014	6014							-0.03294720905410031
GEAYMRLS	8	Unmodified	_GEAYMRLS_					0	0	0		ENST00000551915.5_1_12:83081308-83379891:+|nuORF;TMTC2|p.A737Qfs*4|1|0.28|ENSG00000179104|chr12:83050953-83050953|A/-|frameshift_variant;ENSG00000179104|ENST00000321196|TMTC2	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	463.723652	925.432752	0.085084	3.9455E-05	0.67928	0.000315	0.76437	0.00035446	463.7238569054736	86.804	0.62403	86.891	86.63	87.254	0.08709	-0.060316	0.00012423	NaN	12.532	52	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353280			10683	7102	6014	6014							-0.03294720905410031
GEAYMRLS	8	Unmodified	_GEAYMRLS_					0	0	0		ENST00000551915.5_1_12:83081308-83379891:+|nuORF;TMTC2|p.A737Qfs*4|1|0.28|ENSG00000179104|chr12:83050953-83050953|A/-|frameshift_variant;ENSG00000179104|ENST00000321196|TMTC2	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	463.723652	925.432752	0.32434	0.0001504	0.36654	0.00016997	0.69088	0.00032038	463.72376952335895	86.928	0.66483	86.923	86.67	87.335	-0.0056229	-0.028183	-0.00016582	NaN	12.532	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356980			10684	7102	6014	6014							-0.03294720905410031
GECLECDLL	9	Unmodified	_GECLECDLL_					0	0	0			REV__ENST00000512335.5_1_5:1629283-1629505:-|nuORF	REV__ENST00000512335.5_1_5:1629283-1629505:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.281982421875	2	497.714636	993.414719	0.50989	0.00025378	-2.005	-0.0009979	-1.4951	-0.00074411	497.7138895937239	79.481	0.41588	79.452	79.252	79.668	-0.028923					23	16	2	0	0	0	0.25526	1	20544	20544		7.9102	0.62092	1	87899	+		10685	21815	6015	6015	13830	13830					-0.08225223942440607
GEDDFALI	8	Unmodified	_GEDDFALI_					0	0	0			REV__nc|ENSG00000135525|Q14244-5|MAP7	REV__nc|ENSG00000135525|Q14244-5|MAP7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.7947692871094	2	440.208358	878.402163	-0.0097571	-4.2952E-06	-0.24161	-0.00010636	-0.25137	-0.00011066	440.2081662087364	59.418	0.37511	59.418	59.215	59.59	0					15	12	2	0	0	0	0.34046	1	14475	14475		14.582	0	1	107360	+		10686	13211	6016	6016	13831	13831					-0.04190176018812508
GEDEEELFQAI	11	Unmodified	_GEDEEELFQAI_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.5638122558594	3	427.194469	1278.56158	-0.049372	-2.1092E-05	0.35127	0.00015006	0.3019	0.00012897	427.52895243638284	40.953	0.076614	41.043	41.002	41.079	0.090252					4	2	2	0	0	0	0.3299	1	8793	8793		9.7643	0	1	100540			10687	3280	6017	6017	13832	13832					-0.06656132252123825
GEDTHTVSL	9	Unmodified	_GEDTHTVSL_					0	0	0		HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;HMCN1|p.A5600Gfs*20|1|0.2|ENSG00000143341|chr1:186189767-186189768|-/G|frameshift_variant;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2774353027344	2	479.727446	957.44034	0.58151	0.00027897	2.5119	0.001205	3.0934	0.001484	479.72874374135534	77.124	0.47003	77.093	76.905	77.375	-0.031334					25	16	2	0	0	0	0.20651	1	19872	19872		20.454	0	1	165830			10688	4502	6018	6018	13833	13833					-0.04008290104138723
GEEKKTVL	8	Unmodified	_GEEKKTVL_					0	0	0			REV__ENSG00000085760|ENST00000263629|MTIF2	REV__ENSG00000085760|ENST00000263629|MTIF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2775573730469	2	452.260925	902.507297	0.2001	9.0497E-05	-2.2195	-0.0010038	-2.0194	-0.00091329	452.2595133468442	70.36	0.33191	70.36	70.074	70.406	0					14	11	2	0	0	0	0.34092	1	17818	17818		8.5933	0	1	70190	+		10689	13967	6019	6019	13834	13834					0.052143651776077604
GEENKDDDNVF	11	Unmodified	_GEENKDDDNVF_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.845947265625	3	427.84584	1280.51569	-0.13198	-5.6468E-05	0.72674	0.00031093	0.59476	0.00025446	427.84611921673104	41.515	0.60926	41.515	41.199	41.809	0					46	26	2	0	0	0	0.33432	1	9033	9033		19.144	2.8694	1	2989200			10690	5388	6020	6020	13835	13835					-0.1133477743437652
GEENKDDDNVF	11	Unmodified	_GEENKDDDNVF_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.2657470703125	2	641.265121	1280.51569	0.41813	0.00026813	0.50497	0.00032382	0.92311	0.00059196	641.2655235366987	41.141	0.47826	41.231	40.978	41.456	0.090252					45	17	3	0	0	0	0.078698	1	8838	8838		55.503	22.717	1	524610			10691	5388	6020	6020	13836	13836					-0.1133477743437652
GEENKDDDNVF	11	Unmodified	_GEENKDDDNVF_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.84600830078125	3	427.84584	1280.51569	-0.13448	-5.7538E-05	0.15023	6.4277E-05	0.015751	6.7389E-06	427.8460712979908	41.127	0.60867	41.218	40.902	41.511	0.090252					81	22	5	0	0	0	0.2912	1	8860	8860		23.016	0.24069	1	2396900			10692	5388	6020	6020	13837	13837					-0.1133477743437652
GEENKDDDNVF	11	Unmodified	_GEENKDDDNVF_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.845947265625	3	427.84584	1280.51569	-0.21376	-9.1454E-05	0.26242	0.00011228	0.048667	2.0822E-05	427.8460684218523	41.072	0.61541	41.169	40.832	41.448	0.096626					82	22	5	0	0	0	0.34327	1	8773	8773		18.34	0.47655	1	2277200			10693	5388	6020	6020	13838	13838					-0.1133477743437652
GEENKDDDNVF	11	Unmodified	_GEENKDDDNVF_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	641.265121	1280.51569	0.31801	0.00020393	0.55968	0.00035891	0.87769	0.00056283	641.265501351086	41.067	0.48843	41.164	40.933	41.422	0.096626	-0.033754	4.4972E-05	NaN	55.503	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	550710			10694	5388	6020	6020							-0.1133477743437652
GEEPRPPAP	9	Unmodified	_GEEPRPPAP_					0	0	0			REV__ENST00000370557.5_1_X:139014736-139014982:-|nuORF	REV__ENST00000370557.5_1_X:139014736-139014982:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.2274169921875	2	475.240524	948.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.257	1	34.257	33.757	34.757	0								0	0	0	0.22933	1	6735	6735		13.042	2.2185	1		+		10695	20382	6021	6021	13839	13839					-0.009799761420026698
GEEQGEPNGGA	11	Unmodified	_GEEQGEPNGGA_					0	0	0			REV__ENSG00000133477|ENST00000333407|FAM83F	REV__ENSG00000133477|ENST00000333407|FAM83F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7932739257812	2	522.715067	1043.41558	0.21453	0.00011214	0.87446	0.00045709	1.089	0.00056923	522.7153742407552	15.705	0.28898	15.641	15.517	15.806	-0.064413					13	9	2	0	0	0	0.33324	1	1110	1110		1.1933	0.39971	1	19952	+		10696	15625	6022	6022	13840	13840					-0.1043896997750835
GEETPLMWH	9	Unmodified	_GEETPLMWH_					0	0	0		ENST00000609974.1_1_7:155088624-155088729:-|nuORF	ENST00000609974.1_1_7:155088624-155088729:-|nuORF	ENST00000609974.1_1_7:155088624-155088729:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2799682617188	2	550.247492	1098.48043	0.27623	0.00015199	0.43879	0.00024144	0.71502	0.00039344	550.2477003578424	40.837	1.0069	40.937	40.173	41.18	0.099407					56	22	3	0	0	0	0.2451	1	8606	8606		10.824	1.4765	1	542700			10697	12335	6023	6023	13841	13841					-0.0648706670519914
GEFECRTE	8	Unmodified	_GEFECRTE_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1;ENST00000462385.1_1_2:220427921-220430090:-|nuORF	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.25665283203125	2	485.700374	969.386196	0.16482	8.0056E-05	0.040211	1.953E-05	0.20504	9.9586E-05	485.7003247246063	30.682	0.80537	30.71	30.552	31.358	0.027946					39	28	2	0	0	0	0.34131	1	5786	5786		7.9102	5.3327	1	98873			10698	3128	6024	6024	13842	13842					-0.09972205527344613
GEFHMTYSKL	10	Unmodified	_GEFHMTYSKL_					0	0	0			REV__nc|ENSG00000042781|O75445-3|USH2A	REV__nc|ENSG00000042781|O75445-3|USH2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5423278808594	3	404.862108	1211.56449	-0.47353	-0.00019171	1.6163	0.0006544	1.1428	0.00046268	404.862539330888	13.611	0.53012	13.544	13.329	13.859	-0.067495					22	18	2	0	0	0	0.32034	1	499	499		4.7159	0.83959	1	38397	+		10699	22882	6025	6025	13843	13843					-0.03282535608309445
GEFNQKLV	8	Unmodified	_GEFNQKLV_					0	0	0		nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7533264160156	2	467.753267	933.491981	-0.21114	-9.876E-05	0.039202	1.8337E-05	-0.17193	-8.0423E-05	467.7532389016399	59.62	0.44021	59.715	59.491	59.932	0.095093					32	15	3	0	0	0	0.31088	1	14517	14517		28.487	1.6032	1	414210			10700	1029	6026	6026	13844	13844					0.022574983804133808
GEFQLGPI	8	Unmodified	_GEFQLGPI_					0	0	0			REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	REV__nc|ENSG00000167080|Q8NHY0-3|B4GALNT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.7290954589844	2	430.729261	859.443968	-0.060078	-2.5877E-05	-2.198	-0.00094674	-2.2581	-0.00097261	430.72917143718865	81.993	1.1006	81.993	81.412	82.513	0					70	42	3	0	0	0	0.3474	1	21438	21438		25.399	0	1	385170	+		10701	17361	6027	6027	13845	13845					0.008624244603652187
GEFRRYQGPRT	11	Unmodified	_GEFRRYQGPRT_					0	0	0		ENST00000556683.1_1_14:51712110-51721234:+|nuORF;ENSG00000139921|ENST00000457354|TMX1;TMX1|p.F261Qfs*22|1|0.05|ENSG00000139921|chr14:51254456-51254457|-/CAAAAATGTA|frameshift_variant	ENST00000556683.1_1_14:51712110-51721234:+|nuORF	ENST00000556683.1_1_14:51712110-51721234:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.5531311035156	3	456.237337	1365.69018	-0.20206	-9.2188E-05	3.7183	0.0016964	3.5162	0.0016042	456.2384017069443	13.997	0.14643	13.93	13.831	13.977	-0.066068					7	4	2	0	0	0	0.33326	1	597	597		1.4551	0.67859	1	12201			10702	4272	6028	6028	13846	13846					0.021963122921079048
GEFTIKTV	8	Unmodified	_GEFTIKTV_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-6|EMSY	REV__nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.75	2	447.750193	893.485833	0.49906	0.00022346	0.050845	2.2766E-05	0.54991	0.00024622	447.75026883334885	47.986	0.8614	47.986	47.745	48.606	0					59	30	3	0	0	0	0.021656	3	10961	10910;10961;11011		99.799	0	1	1976900	+		10703	16819	6029	6029	13847;13848;13849	13848					0.03482980148919523
GEFTIKTV	8	Unmodified	_GEFTIKTV_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-6|EMSY	REV__nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.75054931640625	2	447.750193	893.485833	0.5739	0.00025697	-0.036128	-1.6176E-05	0.53778	0.00024079	447.7501729721794	47.902	0.85103	47.949	47.722	48.573	0.047523					50	31	2	0	0	0	0.026963	2	10962	10915;10962		92.653	0	1	2361500	+		10704	16819	6029	6029	13850;13851	13851					0.03482980148919523
GEFTIKTV	8	Unmodified	_GEFTIKTV_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-6|EMSY	REV__nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.75054931640625	2	447.750193	893.485833	0.47183	0.00021126	-0.078764	-3.5266E-05	0.39306	0.00017599	447.7501094002284	47.917	0.81449	47.961	47.746	48.56	0.043324					51	30	3	0	0	0	0.011583	2	10910	10910;10963		114.65	0	1	2441600	+		10705	16819	6029	6029	13852;13853	13852					0.03482980148919523
GEFTIKTV	8	Unmodified	_GEFTIKTV_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-6|EMSY	REV__nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	447.750193	893.485833	0.49906	0.00022346	0.050845	2.2766E-05	0.54991	0.00024622	447.75026883334885	47.986	0.8614	47.986	47.745	48.606	0	0.020889	7.1293E-05	NaN	114.65	59	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1976900	+		10706	16819	6029	6029							0.03482980148919523
GEFTIKTV	8	Unmodified	_GEFTIKTV_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-6|EMSY	REV__nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	447.750193	893.485833	0.5739	0.00025697	-0.036128	-1.6176E-05	0.53778	0.00024079	447.7501729721794	47.902	0.85103	47.949	47.722	48.573	0.047523	-0.016054	-6.5907E-06	NaN	114.65	50	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2361500	+		10707	16819	6029	6029							0.03482980148919523
GEFTIKTV	8	Unmodified	_GEFTIKTV_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-6|EMSY	REV__nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	447.750193	893.485833	0.47183	0.00021126	-0.078764	-3.5266E-05	0.39306	0.00017599	447.7501094002284	47.917	0.81449	47.961	47.746	48.56	0.043324	-0.0048349	-4.4771E-05	NaN	114.65	51	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2441600	+		10708	16819	6029	6029							0.03482980148919523
GEGPKNKN	8	Unmodified	_GEGPKNKN_					0	0	0			REV__nc|ENSG00000118507|O43687-2|AKAP7	REV__nc|ENSG00000118507|O43687-2|AKAP7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.564208984375	2	422.219591	842.42463	-0.10446	-4.4106E-05	0.10726	4.5285E-05	0.0027944	1.1799E-06	422.2196833683139	23.753	0.3202	23.681	23.501	23.821	-0.072559					15	10	2	0	0	0	0.34337	1	3499	3499		5.2307	0	1	29943	+		10709	15014	6030	6030	13854	13854					-0.00288531830528882
GEGRGQAMAA	10	Unmodified	_GEGRGQAMAA_					0	0	0			REV__ENST00000561482.5_1_16:29802188-29802479:+|nuORF	REV__ENST00000561482.5_1_16:29802188-29802479:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.7735290527344	2	474.221808	946.429063	0.34268	0.0001625	0.30889	0.00014648	0.65157	0.00030899	474.22196953746135	89.599	0.49674	89.598	89.306	89.803	-0.00080872					63	37	2	0	0	0	0.31358	1	23688	23688		13.906	4.5586	1	143980	+		10710	22306	6031	6031	13855	13855					-0.04629390679281187
GEGVGKRPK	9	Unmodified	_GEGVGKRPK_					0	0	0		nc|ENSG00000114439|Q8WY36-3|BBX;BBX|p.F697Ifs*8|1|0.34|ENSG00000114439|chr3:107778396-107778397|-/A|frameshift_variant;nc|ENSG00000114439|Q8WY36-2|BBX;ENSG00000114439|ENST00000325805|BBX	nc|ENSG00000114439|Q8WY36-3|BBX	nc|ENSG00000114439|Q8WY36-3|BBX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.274169921875	2	464.272158	926.529764	-0.14532	-6.7469E-05	-0.38671	-0.00017954	-0.53203	-0.00024701	464.2720146835603	14.285	0.92924	14.219	13.889	14.818	-0.066068					106	32	6	0	0	0	0.33018	1	634	634		4.3292	0	1	779000			10711	72	6032	6032	13856	13856					0.06356009365890714
GEHGGRDDLS	10	Unmodified	_GEHGGRDDLS_					0	0	0		ENST00000406453.3_1_7:5331370-5336744:+|nuORF	ENST00000406453.3_1_7:5331370-5336744:+|nuORF	ENST00000406453.3_1_7:5331370-5336744:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2101440429688	2	521.731052	1041.44755	0.28427	0.00014831	-0.78111	-0.00040753	-0.49684	-0.00025922	521.7305866728248	22.451	0.89059	22.451	22.105	22.996	0					72	30	3	0	0	0	0.30093	1	3181	3181		21.537	2.28	1	558540			10712	10223	6033	6033	13857	13857					-0.07151557503721051
GEHGGRDDLS	10	Unmodified	_GEHGGRDDLS_					0	0	0		ENST00000406453.3_1_7:5331370-5336744:+|nuORF	ENST00000406453.3_1_7:5331370-5336744:+|nuORF	ENST00000406453.3_1_7:5331370-5336744:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2101440429688	2	521.731052	1041.44755	0.23815	0.00012425	-0.80889	-0.00042202	-0.57074	-0.00029777	521.7305595170405	22.577	1.0964	22.489	21.981	23.077	-0.087608					89	39	4	0	0	0	0.27979	1	3221	3221		27.629	2.2295	1	576110			10713	10223	6033	6033	13858	13858					-0.07151557503721051
GEHSWVLC	8	Unmodified	_GEHSWVLC_					0	0	0			REV__ENST00000489684.2_1_3:49044864-49050780:+|nuORF	REV__ENST00000489684.2_1_3:49044864-49050780:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7772216796875	2	465.710545	929.406537	-0.086843	-4.0444E-05	0.56964	0.00026529	0.4828	0.00022484	465.7107941196971	69.867	0.383	69.933	69.692	70.075	0.066048					19	13	2	0	0	0	0.34185	1	17617	17617		2.5775	0	1	102340	+		10714	18028	6034	6034	13859	13859					-0.060989900768731786
GEIIYPEI	8	Unmodified	_GEIIYPEI_					0	0	0		LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant;ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF;LYST|p.H1457Ifs*42|1|0.05|ENSG00000143669|chr1:235791873-235791874|-/AT|frameshift_variant;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF;LYST|p.A1574Sfs*8|1|0.25|ENSG00000143669|chr1:235787342-235787343|-/T|frameshift_variant;LYST|p.F1726Lfs*2|1|0.35|ENSG00000143669|chr1:235780901-235780901|A/-|frameshift_variant	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2611083984375	2	467.250026	932.485499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.587	1	57.587	57.087	58.087	0								0	0	0	0.30279	1	13906	13906		28.487	5.3384	1				10715	4540	6035	6035	13860	13860					0.01655560429048819
GEIKIAVSI	9	Unmodified	_GEIKIAVSI_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2868347167969	2	465.286943	928.559333	0.11347	5.2797E-05	-0.070965	-3.3019E-05	0.042507	1.9778E-05	465.28685875499013	67.575	1.4227	67.558	67.009	68.432	-0.016304					122	49	4	0	0	0	0.19083	1	17171	17171		24.991	0	1	6984700			10716	12572	6036	6036	13861	13861					0.09219528591370363
GEIVNIIL	8	Unmodified	_GEIVNIIL_					0	0	0		ENST00000586664.1_1_19:32873361-32873986:+|nuORF;ENSG00000168813|ENST00000355898|ZNF507	ENST00000586664.1_1_19:32873361-32873986:+|nuORF	ENST00000586664.1_1_19:32873361-32873986:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.7682800292969	2	435.768386	869.522219	-0.068499	-2.985E-05	-0.39738	-0.00017317	-0.46588	-0.00020302	435.76812954780974	66.914	0.56266	66.914	66.63	67.193	0					51	19	3	0	0	0	0.16948	1	16796	16796		48.346	0	1	1162300			10717	6303	6037	6037	13862	13862					0.08223857045629757
GEKFEQMFVK	10	Unmodified	_GEKFEQMFVK_					0	0	0			REV__ENSG00000163466|ENST00000315717|ARPC2	REV__ENSG00000163466|ENST00000315717|ARPC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.8955993652344	3	414.877758	1241.61144	0.46257	0.00019191	3.5668	0.0014798	4.0294	0.0016717	415.2134330748311	45.174	0.14074	45.243	45.15	45.291	0.068569					6	4	2	0	0	0	0.31889	1	10053	10053		0.56317	0	1	64284	+		10718	17054	6038	6038	13863	13863					0.00030323942814902693
GEKFRRLA	8	Unmodified	_GEKFRRLA_					0	0	0		nc|ENSG00000213999|Q02080|MEF2B;ENSG00000213999|ENST00000424583|MEF2B	nc|ENSG00000213999|Q02080|MEF2B	nc|ENSG00000213999|Q02080|MEF2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.25091552734375	2	488.787976	975.561398	0.43678	0.00021349	-1.0385	-0.00050759	-0.60169	-0.0002941	488.7894678966991	51.384	0.30978	51.384	51.198	51.508	0					23	11	3	0	0	0	0.33993	1	11941	11941		11.64	4.3511	1	255600			10719	8372	6039	6039	13864	13864					0.07264002119848101
GEKIITSSAL	10	Unmodified	_GEKIITSSAL_					0	0	0			REV__SAG|p.S348Ifs*3|1|0.03|ENSG00000130561|chr2:233340473-233340474|-/A|frameshift_variant	REV__SAG|p.S348Ifs*3|1|0.03|ENSG00000130561|chr2:233340473-233340474|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.787841796875	2	509.792589	1017.57063	0.44894	0.00022886	1.6857	0.00085936	2.1346	0.0010882	510.29780058676744	54.347	1.1407	54.331	53.865	55.006	-0.015923					122	40	5	0	0	0	0.16839	1	12876	12876		36.506	0.37917	1	5306600	+		10720	15465	6040	6040	13865	13865					0.06254305894833578
GEKITINK	8	Unmodified	_GEKITINK_					0	0	0		ENST00000504101.1_1_7:102210280-102212998:-|nuORF;nc|ENSG00000285437|Q9H1A7|POLR2J3;ENSG00000228049|ENST00000333432|POLR2J2;nc|ENSG00000228049|Q9GZM3-2|POLR2J2;ENSG00000168255|ENST00000513506|POLR2J3	ENST00000504101.1_1_7:102210280-102212998:-|nuORF	ENST00000504101.1_1_7:102210280-102212998:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.75262451171875	2	451.768917	901.523281	0.29322	0.00013247	-1.6174	-0.00073067	-1.3241	-0.0005982	451.767938502114	36.557	0.49005	36.557	36.385	36.875	0					20	16	2	0	0	0	0.43043	1	7485	7485		12.532	0.89125	1	104640			10721	6258	6041	6041	13866	13866					0.06858071414524147
GEKKDVYK	8	Unmodified	_GEKKDVYK_					0	0	0		ENSG00000000971|ENST00000367429|CFH;nc|ENSG00000000971|P08603|CFH	ENSG00000000971|ENST00000367429|CFH	ENSG00000000971|ENST00000367429|CFH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.256103515625	2	483.766374	965.518196	0.014934	7.2244E-06	-0.05977	-2.8915E-05	-0.044836	-2.169E-05	483.76635157450573	19.312	0.4519	19.312	19.095	19.547	0					23	15	2	0	0	0	0.34337	1	2151	2151		5.2307	0.90143	1	39204			10722	286	6042	6042	13867	13867					0.03405767551896588
GEKKDVYK	8	Unmodified	_GEKKDVYK_					0	0	0		ENSG00000000971|ENST00000367429|CFH;nc|ENSG00000000971|P08603|CFH	ENSG00000000971|ENST00000367429|CFH	ENSG00000000971|ENST00000367429|CFH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2559814453125	2	483.766374	965.518196	0.21749	0.00010522	0.071607	3.4641E-05	0.2891	0.00013986	483.76640424485515	19.373	0.47929	19.318	19.144	19.624	-0.055693					24	16	2	0	0	0	0.34247	1	2169	2169		8.5933	2.3875	1	50513			10723	286	6042	6042	13868	13868					0.03405767551896588
GEKKMRII	8	Unmodified	_GEKKMRII_					0	0	0		ENST00000525032.1_1_11:105481676-105732994:+|nuORF	ENST00000525032.1_1_11:105481676-105732994:+|nuORF	ENST00000525032.1_1_11:105481676-105732994:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.3056335449219	2	487.794412	973.574271	0.86481	0.00042185	3.3593	0.0016386	4.2241	0.0020605	487.7960002985699	56.165	0.16457	56.146	56.048	56.213	-0.019081					6	5	2	0	0	0	0.33993	1	13434	13434		11.64	0.14559	1	305700			10724	11530	6043	6043	13869	13869					0.08642697187735848
GEKRRGCV	8	Unmodified	_GEKRRGCV_					0	0	0		nc|ENSG00000167311|Q96L15-2|ART5;ENSG00000167311|ENST00000397068|ART5	nc|ENSG00000167311|Q96L15-2|ART5	nc|ENSG00000167311|Q96L15-2|ART5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2776794433594	2	452.742711	903.470869	0.16021	7.2534E-05	-0.15027	-6.8032E-05	0.0099428	4.5015E-06	452.74236396062196	70.128	0.56267	70.128	69.815	70.378	0					32	20	2	0	0	0	0.34131	1	17757	17757		12.532	2.3482	1	161620			10725	6168	6044	6044	13870	13870					0.015272097999172729
GEKSFKCEKC	10	Unmodified	_GEKSFKCEKC_					0	0	0		nc|ENSG00000185252|Q16587-4|ZNF74;nc|ENSG00000185252|Q16587-2|ZNF74;ENST00000476678.1_1_22:20755529-20761255:+|nuORF;nc|ENSG00000185252|Q16587-3|ZNF74;ENSG00000185252|ENST00000400451|ZNF74;ENST00000403682.7_1_22:20748811-20761255:+|nuORF	nc|ENSG00000185252|Q16587-4|ZNF74	nc|ENSG00000185252|Q16587-4|ZNF74	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3031616210938	2	579.767734	1157.52091	0.37687	0.00021849	-0.055337	-3.2083E-05	0.32153	0.00018641	579.7676532767777	45.255	0.67514	45.255	44.991	45.666	0					41	24	2	0	0	0	0.31515	1	10032	10032		4.897	1.3005	1	814030			10726	7516	6045	6045	13871	13871					-0.051544683770998745
GELAKPVL	8	Unmodified	_GELAKPVL_					0	0	0			REV__nc|ENSG00000114126|Q14188-7|TFDP2	REV__nc|ENSG00000114126|Q14188-7|TFDP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2391662597656	2	413.755278	825.496004	-0.2761	-0.00011424	-0.30011	-0.00012417	-0.57621	-0.00023841	413.75510412986927	73.656	0.54684	73.656	73.281	73.828	0					33	19	2	0	0	0	0.28088	1	18846	18846		39.957	1.9833	1	251150	+		10727	14824	6046	6046	13872	13872					0.07627587874128494
GELEGWKRG	9	Unmodified	_GELEGWKRG_					0	0	0			REV__nc|ENSG00000117481|Q96CB9-3|NSUN4	REV__nc|ENSG00000117481|Q96CB9-3|NSUN4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2672119140625	2	516.267073	1030.51959	0.22261	0.00011493	0.84057	0.00043396	1.0632	0.00054888	516.7691838552759	24.203	0.77221	24.164	23.62	24.392	-0.038927					45	26	2	0	0	0	0.24688	1	3647	3647		14.838	4.0143	1	134800	+		10728	14972	6047	6047	13873	13873					0.005554016406676965
GELERLSI	8	Unmodified	_GELERLSI_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7590637207031	2	458.758549	915.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.955	1	54.955	54.455	55.455	0								0	0	0	0.04596	1	13088	13088		71.922	0	1				10729	975	6048	6048	13874	13874					0.04141481034866956
GELERLSI	8	Unmodified	_GELERLSI_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7585754394531	2	458.758549	915.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.958	1	55.021	54.521	55.521	0.063202								0	0	0	0.03429	1	13088	13088		78.728	0	1				10730	975	6048	6048	13875	13875					0.04141481034866956
GELERLSI	8	Unmodified	_GELERLSI_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7584533691406	2	458.758549	915.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.088	1	55.069	54.569	55.569	-0.019081								0	0	0	0.03429	1	13123	13123		78.728	0	1				10731	975	6048	6048	13876	13876					0.04141481034866956
GELEVQRV	8	Unmodified	_GELEVQRV_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7888488769531	2	465.256174	928.497795	0.4595	0.00021379	-0.64608	-0.00030059	-0.18658	-8.6807E-05	465.2559662183486	50.714	0.16884	50.714	50.623	50.792	0					8	5	2	0	0	0	0.31302	1	11776	11776		29.082	0	1	96050			10732	7838	6049	6049	13877	13877					0.03068596892092046
GELGWDKEG	9	Unmodified	_GELGWDKEG_					0	0	0			REV__nc|ENSG00000185453|Q86XI8|ZSWIM9	REV__nc|ENSG00000185453|Q86XI8|ZSWIM9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7480773925781	2	495.729989	989.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.639	1	67.623	67.123	68.123	-0.016296								0	0	0	0.20639	1	16983	16983		20.454	0.039092	1		+		10733	18382	6050	6050	13878	13878					-0.04971986241525883
GELHEFII	8	Unmodified	_GELHEFII_					0	0	0			REV__nc|ENSG00000163867|O95789-5|ZMYM6	REV__nc|ENSG00000163867|O95789-5|ZMYM6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.25531005859375	2	479.255643	956.496732	0.31869	0.00015274	0.38105	0.00018262	0.69975	0.00033536	479.25578206162413	95.667	0.43048	95.664	95.467	95.897	-0.0038223					88	40	3	0	0	0	0.3366	1	25560	25560		18.135	4.6271	1	224430	+		10734	17096	6051	6051	13879	13879					0.016743825231969822
GELIQKIL	8	Unmodified	_GELIQKIL_					0	0	0			REV__ENSG00000081320|ENST00000263955|STK17B	REV__ENSG00000081320|ENST00000263955|STK17B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2769470214844	2	457.289485	912.564418	0.19199	8.7797E-05	-0.18617	-8.5136E-05	0.0058194	2.6611E-06	457.2894471077839	58.448	0.507	58.539	58.342	58.849	0.091301					26	17	2	0	0	0	0.30517	1	14124	14124		30.225	0	1	260980	+		10735	13903	6052	6052	13880	13880					0.10463832454001931
GELKPLVL	8	Unmodified	_GELKPLVL_					0	0	0			REV__nc|ENSG00000278224|Q2TBC4-2|PRICKLE4	REV__nc|ENSG00000278224|Q2TBC4-2|PRICKLE4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.77874755859375	2	434.778754	867.542954	-0.085982	-3.7383E-05	0.077006	3.3481E-05	-0.0089759	-3.9025E-06	434.7786873353667	67.74	0.67986	67.74	67.368	68.048	0					47	23	3	0	0	0	0.16948	2	17010	17010;17058		48.346	9.3208	1	371970	+		10736	15242	6053	6053	13881;13882	13881					0.10388447425270897
GELKPLVL	8	Unmodified	_GELKPLVL_					0	0	0			REV__nc|ENSG00000278224|Q2TBC4-2|PRICKLE4	REV__nc|ENSG00000278224|Q2TBC4-2|PRICKLE4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7785949707031	2	434.778754	867.542954	0.12386	5.385E-05	-0.04209	-1.83E-05	0.081766	3.555E-05	434.7786632947131	67.656	0.83935	67.734	67.354	68.193	0.078041					54	29	3	0	0	0	0.16948	1	16997	16997		48.346	10.372	1	358540	+		10737	15242	6053	6053	13883	13883					0.10388447425270897
GELKPLVL	8	Unmodified	_GELKPLVL_					0	0	0			REV__nc|ENSG00000278224|Q2TBC4-2|PRICKLE4	REV__nc|ENSG00000278224|Q2TBC4-2|PRICKLE4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7787170410156	2	434.778754	867.542954	-0.13283	-5.7751E-05	0.22343	9.7142E-05	0.090599	3.939E-05	434.7787842482504	67.701	0.80587	67.685	67.292	68.098	-0.016296					43	27	2	0	0	0	0.22	2	16977	16977;17040		39.957	9.3208	1	386390	+		10738	15242	6053	6053	13884;13885	13884					0.10388447425270897
GELKPLVL	8	Unmodified	_GELKPLVL_					0	0	0			REV__nc|ENSG00000278224|Q2TBC4-2|PRICKLE4	REV__nc|ENSG00000278224|Q2TBC4-2|PRICKLE4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	434.778754	867.542954	-0.085982	-3.7383E-05	0.077006	3.3481E-05	-0.0089759	-3.9025E-06	434.7786873353667	67.74	0.67986	67.74	67.368	68.048	0	0.020668	2.916E-05	NaN	48.346	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371970	+		10739	15242	6053	6053							0.10388447425270897
GELKPLVL	8	Unmodified	_GELKPLVL_					0	0	0			REV__nc|ENSG00000278224|Q2TBC4-2|PRICKLE4	REV__nc|ENSG00000278224|Q2TBC4-2|PRICKLE4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	434.778754	867.542954	0.12386	5.385E-05	-0.04209	-1.83E-05	0.081766	3.555E-05	434.7786632947131	67.656	0.83935	67.734	67.354	68.193	0.078041	0.014129	-7.4401E-05	NaN	48.346	54	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358540	+		10740	15242	6053	6053							0.10388447425270897
GELKPLVL	8	Unmodified	_GELKPLVL_					0	0	0			REV__nc|ENSG00000278224|Q2TBC4-2|PRICKLE4	REV__nc|ENSG00000278224|Q2TBC4-2|PRICKLE4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	434.778754	867.542954	-0.13283	-5.7751E-05	0.22343	9.7142E-05	0.090599	3.939E-05	434.7787842482504	67.701	0.80587	67.685	67.292	68.098	-0.016296	-0.034798	0.00015648	NaN	48.346	43	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	386390	+		10741	15242	6053	6053							0.10388447425270897
GELLDMNGEEL	11	Unmodified	_GELLDMNGEEL_					0	0	0			REV__nc|ENSG00000139971|Q86TY3-3|ARMH4	REV__nc|ENSG00000139971|Q86TY3-3|ARMH4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.2796630859375	2	610.279186	1218.54382	0.48757	0.00029756	-0.10205	-6.2281E-05	0.38552	0.00023528	610.279037034143	67.573	0.59618	67.651	67.488	68.084	0.078041					41	20	3	0	0	0	0.3429	1	16963	16963		18.373	1.2602	1	411520	+		10742	16015	6054	6054	13886	13886					-0.05671170778623491
GELLDMNGEEL	11	Unmodified	_GELLDMNGEEL_					0	0	0			REV__nc|ENSG00000139971|Q86TY3-3|ARMH4	REV__nc|ENSG00000139971|Q86TY3-3|ARMH4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.2797241210938	2	610.279186	1218.54382	0.21689	0.00013236	0.5597	0.00034157	0.77659	0.00047394	610.2792459220605	67.731	0.59209	67.714	67.478	68.071	-0.016296					39	20	3	0	0	0	0.30708	1	16992	16992		21.59	0.053175	1	368440	+		10743	16015	6054	6054	13887	13887					-0.05671170778623491
GELLERSL	8	Unmodified	_GELLERSL_					0	0	0			REV__ENST00000401087.3_3_1:149089877-149094694:-|nuORF	REV__ENST00000401087.3_3_1:149089877-149094694:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.758544921875	2	458.758549	915.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.12	1	55.12	54.62	55.62	0								0	0	0	0.04596	1	13139	13139		71.922	2.8174	1		+		10744	20708	6055	6055	13888	13888					0.04141481034844219
GELLLHII	8	Unmodified	_GELLLHII_					0	0	0		ENST00000593209.5_2_17:40340836-40341070:-|nuORF	ENST00000593209.5_2_17:40340836-40341070:-|nuORF	ENST00000593209.5_2_17:40340836-40341070:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2839660644531	2	454.284203	906.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.223	1	89.314	88.814	89.814	0.090569								0	0	0	0.36169	1	23595	23595		9.3474	0	1				10745	12209	6056	6056	13889	13889					0.0968384979955772
GELLMEPI	8	Unmodified	_GELLMEPI_					0	0	0			REV__nc|ENSG00000057935|Q9BTC8-2|MTA3	REV__nc|ENSG00000057935|Q9BTC8-2|MTA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.6003112792969	2	451.238604	900.462655	0.30447	0.00013739	-0.27528	-0.00012422	0.029198	1.3175E-05	451.2383569303661	57.103	0.9106	57.103	56.555	57.466	0					59	33	2	0	0	0	0.29855	1	13724	13724		32.117	0	1	236070	+		10746	13603	6057	6057	13890	13890					0.008442180399129029
GELLRIGL	8	Unmodified	_GELLRIGL_					0	0	0			REV__ENSG00000071894|ENST00000616140|CPSF1	REV__ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.7740783691406	2	435.774003	869.533452	-0.19875	-8.6612E-05	1.0998	0.00047928	0.90108	0.00039267	435.77459808503437	67.223	0.52664	67.206	67.035	67.562	-0.016304					40	17	4	0	0	0	0.14707	1	16941	16941		52.268	0	1	652760	+		10747	13747	6058	6058	13891	13891					0.09346679139753178
GELPLGPEPF	10	Unmodified	_GELPLGPEPF_					0	0	0		ENST00000583204.5_1_17:30348129-30360999:+|nuORF;ENSG00000185158|ENST00000543378|LRRC37B;nc|ENSG00000185158|Q96QE4-2|LRRC37B;nc|ENSG00000185158|Q96QE4|LRRC37B	ENST00000583204.5_1_17:30348129-30360999:+|nuORF	ENST00000583204.5_1_17:30348129-30360999:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2742309570312	2	528.274032	1054.53351	0.48431	0.00025585	0.99517	0.00052572	1.4795	0.00078157	528.2743896795768	80.191	0.58731	80.191	79.825	80.412	0					47	21	3	0	0	0	0.27059	1	20879	20879		24.021	0	1	485620			10748	7512	6059	6059	13892	13892					0.008426343491009902
GELRAREEEAK	11	Unmodified	_GELRAREEEAK_					0	0	0			REV__ENSG00000179562|ENST00000321407|GCC1	REV__ENSG00000179562|ENST00000321407|GCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.2402038574219	3	429.893236	1286.65788	0.17272	7.4253E-05	0.093753	4.0304E-05	0.26648	0.00011456	430.22701649788104	21.005	1.0548	20.895	20.407	21.462	-0.11003					57	36	3	0	0	0	0.3322	1	2597	2597		4.7159	2.4331	1	61516	+		10749	18082	6060	6060	13893	13893					0.02601480098473985
GELRAVLL	8	Unmodified	_GELRAVLL_					0	0	0			REV__ENSG00000099337|ENST00000263372|KCNK6	REV__ENSG00000099337|ENST00000263372|KCNK6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.76708984375	2	435.774003	869.533452	-0.052168	-2.2733E-05	1.3083	0.00057014	1.2562	0.00054741	435.7745949649298	67.121	0.52907	67.199	66.986	67.515	0.078041					41	18	3	0	0	0	0.32886	1	16798	16798		21.747	0	1	590770	+		10750	14130	6061	6061	13894	13894					0.09346679139753178
GELRLGKTI	9	Unmodified	_GELRLGKTI_					0	0	0		ENST00000508708.1_1_5:122881219-122881564:+|nuORF	ENST00000508708.1_1_5:122881219-122881564:+|nuORF	ENST00000508708.1_1_5:122881219-122881564:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.28668212890625	2	493.803291	985.59203	0.25599	0.00012641	-0.18567	-9.1683E-05	0.070325	3.4727E-05	493.8031708035452	22.337	0.48727	22.337	22.076	22.563	0					30	16	2	0	0	0	0.25938	1	3053	3053		4.3292	0	1	169780			10751	11351	6062	6062	13895	13895					0.09865735714231505
GELSRPGEL	9	Unmodified	_GELSRPGEL_					0	0	0			REV__ENST00000563262.5_1_15:55611170-55611305:-|nuORF	REV__ENST00000563262.5_1_15:55611170-55611305:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2533264160156	2	479.253631	956.49271	0.13801	6.6142E-05	-0.29623	-0.00014197	-0.15822	-7.5827E-05	479.2535348535206	30.962	0.56345	30.989	30.704	31.267	0.027157					27	20	2	0	0	0	0.21447	1	5724	5724		21.537	1.1224	1	152990	+		10752	22326	6063	6063	13896	13896					0.012722930294785328
GELSRPGEL	9	Unmodified	_GELSRPGEL_					0	0	0			REV__ENST00000563262.5_1_15:55611170-55611305:-|nuORF	REV__ENST00000563262.5_1_15:55611170-55611305:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	479.253631	956.49271	0.081199	3.8915E-05	0.31377	0.00015038	0.39497	0.00018929	479.25378984863033	30.997	0.42127	30.997	30.781	31.202	0	0.0039012	0.00025894	NaN	21.537	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176280	+		10753	22326	6063	6063							0.012722930294785328
GELSRPGEL	9	Unmodified	_GELSRPGEL_					0	0	0			REV__ENST00000563262.5_1_15:55611170-55611305:-|nuORF	REV__ENST00000563262.5_1_15:55611170-55611305:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.253631	956.49271	0.059988	2.8749E-05	0.028643	1.3727E-05	0.088631	4.2477E-05	479.253587010024	30.965	0.54804	30.993	30.81	31.358	0.027946	8.6902E-05	-1.4355E-05	NaN	21.537	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181130	+		10754	22326	6063	6063							0.012722930294785328
GELSRPGEL	9	Unmodified	_GELSRPGEL_					0	0	0			REV__ENST00000563262.5_1_15:55611170-55611305:-|nuORF	REV__ENST00000563262.5_1_15:55611170-55611305:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.253631	956.49271	0.13801	6.6142E-05	-0.29623	-0.00014197	-0.15822	-7.5827E-05	479.2535348535206	30.962	0.56345	30.989	30.704	31.267	0.027157	-0.0039881	-0.00032575	NaN	21.537	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152990	+		10755	22326	6063	6063							0.012722930294785328
GELVRRDP	8	Unmodified	_GELVRRDP_					0	0	0		nc|ENSG00000004948|P30988-4|CALCR;nc|ENSG00000004948|P30988-1|CALCR;nc|ENSG00000004948|P30988-3|CALCR;ENSG00000004948|ENST00000426151|CALCR;chr7:93443757-93460821|404|13.56|0.41|5.04|-|0|CALCR,CALCR|1;nc|ENSG00000004948|P30988-6|CALCR;nc|ENSG00000004948|P30988-5|CALCR	nc|ENSG00000004948|P30988-4|CALCR;nc|ENSG00000004948|P30988-6|CALCR	nc|ENSG00000004948|P30988-6|CALCR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.80035400390625	2	471.261791	940.509028	-0.034627	-1.6318E-05	-0.032628	-1.5376E-05	-0.067255	-3.1694E-05	471.26170127919335	17.735	0.62557	17.617	17.386	18.012	-0.11739					31	21	2	0	0	0	0.34337	1	1832	1832		2.3027	0	1	61415			10756	12555;12556	6064	6064	13897	13897					0.036394189862335224
GEMSVDPL	8	Unmodified	_GEMSVDPL_					0	0	0		ENST00000464676.5_1_3:133698382-133748739:-|nuORF	ENST00000464676.5_1_3:133698382-133748739:-|nuORF	ENST00000464676.5_1_3:133698382-133748739:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.7319641113281	2	424.196936	846.379319	-0.14653	-6.2158E-05	-0.94384	-0.00040037	-1.0904	-0.00046253	424.1964983858538	67.211	0.44727	67.289	67.04	67.488	0.078041					21	15	2	0	0	0	0.34353	1	16903	16903		4.756	0	1	129290			10757	10786	6065	6065	13898	13898					-0.05001518407925687
GENPFQGEL	9	Unmodified	_GENPFQGEL_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3	REV__ENSG00000141431|ENST00000269197|ASXL3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7481994628906	2	495.729989	989.445425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.718	1	67.796	67.296	68.296	0.078041								0	0	0	0.13597	1	17012	17012		37.974	3.8716	1		+		10758	16073	6066	6066	13899	13899					-0.049719862415145144
GEPELLLY	8	Unmodified	_GEPELLLY_					0	0	0			REV__ENSG00000005981|ENST00000325885|ASB4	REV__ENSG00000005981|ENST00000325885|ASB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2501220703125	2	467.250026	932.485499	-0.086807	-4.0561E-05	0.36166	0.00016899	0.27485	0.00012842	467.2500078862699	81.938	0.46214	82.007	81.797	82.259	0.068993					32	19	2	0	0	0	0.34046	1	21362	21362		9.3474	0	1	217490	+		10759	13349	6067	6067	13900	13900					0.016555604290601877
GEPKVVFKEKT	11	Unmodified	_GEPKVVFKEKT_					0	0	0		nc|ENSG00000120688|O75554-2|WBP4;ENSG00000120688|ENST00000379487|WBP4	nc|ENSG00000120688|O75554-2|WBP4	nc|ENSG00000120688|O75554-2|WBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5703125	3	421.243206	1260.70779	0.12369	5.2102E-05	-1.0238	-0.00043127	-0.90012	-0.00037917	421.24254072208686	17.007	0.44819	16.946	16.731	17.18	-0.060431					30	16	2	0	0	0	0.46554	1	1471	1471		2.6312	0	1	26592			10760	2956	6068	6068	13901	13901					0.08786214774431755
GEPLLANPNFR	11	Unmodified	_GEPLLANPNFR_					0	0	0		ENST00000532085.1_1_11:118901280-118901526:-|nuORF	ENST00000532085.1_1_11:118901280-118901526:-|nuORF	ENST00000532085.1_1_11:118901280-118901526:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.9009704589844	3	409.887533	1226.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.925	1	43.016	42.516	43.516	0.091362								0	0	0	0.29456	1	9374	9374		12.228	0	1				10761	11634	6069	6069	13902	13902					0.0365160428332274
GEPPALAAV	9	Unmodified	_GEPPALAAV_					0	0	0			REV__ENSG00000213906|ENST00000533293|LTB4R2	REV__ENSG00000213906|ENST00000533293|LTB4R2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.7349548339844	2	412.729261	823.443968	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.161	1	43.239	42.739	43.739	0.077515								0	0	0	0.19804	1	9455	9455		23.148	0	1		+		10762	19046	6070	6070	13903	13903					0.02518424460379265
GEPRALLA	8	Unmodified	_GEPRALLA_					0	0	0		ENSG00000156414|ENST00000409874|TDRD9;nc|ENSG00000156414|Q8NDG6-2|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.93267822265625	2	413.742702	825.470852	0.21138	8.7455E-05	-1.7891	-0.00074021	-1.5777	-0.00065275	413.74247096579137	38.216	0.41799	38.314	38.15	38.568	0.097527					25	14	2	0	0	0	0.33293	1	7928	7928		20.454	0	1	87950			10763	5234	6071	6071	13904	13904					0.05113533071562415
GEPRALLA	8	Unmodified	_GEPRALLA_					0	0	0		ENSG00000156414|ENST00000409874|TDRD9;nc|ENSG00000156414|Q8NDG6-2|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	413.742702	825.470852	-0.16907	-6.995E-05	-1.3044	-0.00053968	-1.4734	-0.00060962	413.742832942515	38.318	0.53128	38.318	38.118	38.649	0	0.0020469	0.00025233	NaN	20.454	22	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100760			10764	5234	6071	6071							0.05113533071562415
GEPVGLDK	8	Unmodified	_GEPVGLDK_					0	0	0			REV__ENSG00000163395|ENST00000335211|IGFN1	REV__ENSG00000163395|ENST00000335211|IGFN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.232421875	2	407.718893	813.423233	-0.40921	-0.00016684	0.63835	0.00026027	0.22915	9.3427E-05	407.71898374608264	13.176	0.30648	13.176	13.003	13.309	0					15	10	2	0	0	0	0.34218	1	336	336		9.3474	0	1	37346	+		10765	17051	6072	6072	13905	13905					0.009058340807200693
GEPVGLDK	8	Unmodified	_GEPVGLDK_					0	0	0			REV__ENSG00000163395|ENST00000335211|IGFN1	REV__ENSG00000163395|ENST00000335211|IGFN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	407.718893	813.423233	-0.34202	-0.00013945	0.91663	0.00037373	0.5746	0.00023428	407.7190231243678	13.243	0.23701	13.144	13.069	13.306	-0.099291	-0.016009	0.00016051	NaN	9.3474	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49137	+		10766	17051	6072	6072							0.009058340807200693
GEPVTHIT	8	Unmodified	_GEPVTHIT_					0	0	0			REV__nc|ENSG00000086848|Q9H6U8|ALG9	REV__nc|ENSG00000086848|Q9H6U8|ALG9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.2157897949219	2	427.224342	852.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.457	1	72.457	71.957	72.957	0								0	0	0	0.35251	1	18471	18471		13.508	2.684	1		+		10767	13981	6073	6073	13906	13906					0.0020123645499552367
GEPWEEVL	8	Unmodified	_GEPWEEVL_					0	0	0		ENST00000367137.3_1_1:205779652-205779835:-|nuORF	ENST00000367137.3_1_1:205779652-205779835:-|nuORF	ENST00000367137.3_1_1:205779652-205779835:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.27740478515625	2	479.729458	957.444362	0.32029	0.00015365	-1.6045	-0.00076972	-1.2842	-0.00061607	479.72874690207857	77.06	0.53429	77.116	76.922	77.456	0.055412					24	18	2	0	0	0	0.33245	1	19848	19848		19.439	0	1	164290			10768	9726	6074	6074	13907	13907					-0.03606200610420274
GEQPTRKP	8	Unmodified	_GEQPTRKP_					0	0	0		ENST00000338313.5_1_6:159462459-159463141:-|nuORF	ENST00000338313.5_1_6:159462459-159463141:-|nuORF	ENST00000338313.5_1_6:159462459-159463141:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7381896972656	2	456.748516	911.482479	0.085886	3.9228E-05	0.051133	2.3355E-05	0.13702	6.2583E-05	456.74851504327046	17.285	1.2097	17.285	16.867	18.077	0					111	41	4	0	0	0	0.22	1	1550	1550		39.957	9.3208	1	1298300			10769	9503	6075	6075	13908	13908					0.02319730094905026
GEQPTRKP	8	Unmodified	_GEQPTRKP_					0	0	0		ENST00000338313.5_1_6:159462459-159463141:-|nuORF	ENST00000338313.5_1_6:159462459-159463141:-|nuORF	ENST00000338313.5_1_6:159462459-159463141:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.73822021484375	2	456.748516	911.482479	-0.049153	-2.2451E-05	0.20366	9.3022E-05	0.15451	7.0571E-05	456.7485897014355	17.457	1.156	17.34	16.909	18.065	-0.11739					103	40	4	0	0	0	0.22	1	1602	1602		39.957	13.074	1	1331400			10770	9503	6075	6075	13909	13909					0.02319730094905026
GEQPTRKP	8	Unmodified	_GEQPTRKP_					0	0	0		ENST00000338313.5_1_6:159462459-159463141:-|nuORF	ENST00000338313.5_1_6:159462459-159463141:-|nuORF	ENST00000338313.5_1_6:159462459-159463141:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7381286621094	2	456.748516	911.482479	0.15233	6.9577E-05	0.087494	3.9963E-05	0.23983	0.00010954	456.74849831231575	17.394	1.0569	17.333	16.971	18.028	-0.060429					108	37	4	0	0	0	0.22	1	1577	1577		39.957	10.876	1	1298900			10771	9503	6075	6075	13910	13910					0.02319730094905026
GEQWYHSKW	9	Unmodified	_GEQWYHSKW_					0	0	0		ENSG00000176896|ENST00000696128|TCEANC;nc|ENSG00000176896|Q8N8B7-2|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2323303222656	3	407.520962	1219.54106	-0.40491	-0.00016501	1.9579	0.0007979	1.553	0.0006329	407.5217493001835	13.124	0.19729	13.056	12.965	13.162	-0.067496					12	6	3	0	0	0	0.26238	1	352	352		1.0715	0	1	13725			10772	6948	6076	6076	13911	13911					-0.05993213330634717
GERPIGASL	9	Unmodified	_GERPIGASL_					0	0	0			REV__ABCA1|p.T298Pfs*20|1|0.11|ENSG00000165029|chr9:104840442-104840442|G/-|frameshift_variant	REV__ABCA1|p.T298Pfs*20|1|0.11|ENSG00000165029|chr9:104840442-104840442|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7705993652344	2	450.250892	898.48723	0.47932	0.00021581	0.15385	6.927E-05	0.63316	0.00028508	450.25075985802266	46.864	0.56599	46.864	46.648	47.214	0					22	19	2	0	0	0	0.15943	1	10614	10614		32.786	7.3864	1	576630	+		10773	13063	6077	6077	13912	13912					0.03392614237657199
GERQEWKRFIE	11	Unmodified	_GERQEWKRFIE_					0	0	0		ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000163874|ENST00000373087|ZC3H12A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.28668212890625	3	493.256397	1476.74736	0.28633	0.00014123	3.4786	0.0017158	3.7649	0.0018571	493.59285991625757	22.135	0.17617	22.135	22.076	22.252	0					7	5	2	0	0	0	0.3333	1	3053	3053		1.3296	0.11481	1	41386			10774	5749	6078	6078	13913	13913					0.028057347778485564
GERRRLQPLL	10	Unmodified	_GERRRLQPLL_					0	0	0			REV__ENST00000343110.2_1_1:203444984-203445029:+|nuORF	REV__ENST00000343110.2_1_1:203444984-203445029:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2391662597656	3	413.254439	1236.74149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.689	1	73.689	73.189	74.189	0								0	0	0	0.37598	1	18846	18846		3.8763	0.55669	1		+		10775	20131	6079	6079	13914	13914					0.1325868105684549
GERRVDLI	8	Unmodified	_GERRVDLI_					0	0	0			REV__ENSG00000018699|ENST00000317907|TTC27	REV__ENSG00000018699|ENST00000317907|TTC27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.27740478515625	2	479.277441	956.540328	0.44211	0.0002119	-0.56779	-0.00027213	-0.12567	-6.0233E-05	479.2769851874779	77.247	2.5126	77.303	76.922	79.434	0.055412					157	97	3	0	0	0	0.44389	1	19848	19848		7.9102	0	1	827700	+		10776	13456	6080	6080	13915	13915					0.06031992020314192
GERRVDLI	8	Unmodified	_GERRVDLI_					0	0	0			REV__ENSG00000018699|ENST00000317907|TTC27	REV__ENSG00000018699|ENST00000317907|TTC27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2774353027344	2	479.277441	956.540328	0.63198	0.00030289	-0.49857	-0.00023895	0.13341	6.394E-05	479.27702172579126	77.255	1.8602	77.223	76.537	78.397	-0.031334					136	68	4	0	0	0	0.44389	1	19872	19872		7.9102	0	1	896210	+		10777	13456	6080	6080	13916	13916					0.06031992020314192
GERTPYVL	8	Unmodified	_GERTPYVL_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ATM|p.S496Ifs*16|1|0.17|ENSG00000149311|chr11:108250952-108250952|G/-|frameshift_variant;ATM|p.K750Sfs*3|1|0.31|ENSG00000149311|chr11:108256336-108256336|C/-|frameshift_variant;ATM|p.A886Kfs*12|1|0.14|ENSG00000149311|chr11:108268425-108268428|TAGC/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7540283203125	2	467.753267	933.491981	0.22623	0.00010582	-0.3775	-0.00017658	-0.15128	-7.0761E-05	467.7530572670526	59.742	0.53778	59.73	59.459	59.997	-0.011486					32	18	3	0	0	0	0.20518	1	14544	14544		42.095	5.9675	1	472850			10778	62	6081	6081	13917	13917					0.022574983804247495
GERTSVVL	8	Unmodified	_GERTSVVL_					0	0	0			REV__nc|ENSG00000172830|Q8TE77-4|SSH3	REV__nc|ENSG00000172830|Q8TE77-4|SSH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.96051025390625	2	430.745442	859.476331	0.027649	1.191E-05	0.25053	0.00010791	0.27818	0.00011982	430.7453648008808	37.09	0.46176	37.178	36.95	37.412	0.08741					22	16	2	0	0	0	0.28769	1	7624	7624		30.637	0	1	141410	+		10779	17738	6082	6082	13918	13918					0.04097211863393113
GESCTCRL	8	Unmodified	_GESCTCRL_					0	0	0			REV__nc|ENSG00000054938|Q6WN34-4|CHRDL2	REV__nc|ENSG00000054938|Q6WN34-4|CHRDL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7786560058594	2	434.686213	867.357872	-0.091923	-3.9957E-05	-2.626	-0.0011415	-2.7179	-0.0011814	434.6850559539763	67.815	0.23788	67.815	67.732	67.97	0					11	7	2	0	0	0	0.34319	1	17058	17058		5.7604	0.52976	1	63960	+		10780	13589	6083	6083	13919	13919					-0.08111226708285812
GESEGLHES	9	Unmodified	_GESEGLHES_					0	0	0			REV__ENST00000487805.6_1_3:49737640-49742607:+|nuORF	REV__ENST00000487805.6_1_3:49737640-49742607:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7018737792969	2	472.701429	943.388304	0.5446	0.00025744	0.22759	0.00010758	0.7722	0.00036502	472.70170201216865	50.638	1.1047	50.638	50.326	51.43	0					99	40	4	0	0	0	0.079066	2	11724	11724;11820		42.095	0	1	5540100	+		10781	21567	6084	6084	13920;13921	13920					-0.0856545351788327
GESEGLHES	9	Unmodified	_GESEGLHES_					0	0	0			REV__ENST00000487805.6_1_3:49737640-49742607:+|nuORF	REV__ENST00000487805.6_1_3:49737640-49742607:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7017822265625	2	472.701429	943.388304	0.66486	0.00031428	0.14109	6.6691E-05	0.80594	0.00038097	472.70161168897414	50.672	0.94742	50.717	50.372	51.32	0.044891					103	34	5	0	0	0	0.055495	3	11710	11710;11753;11794		50.855	0	1	5086300	+		10782	21567	6084	6084	13922;13923;13924	13922					-0.0856545351788327
GESEGLHES	9	Unmodified	_GESEGLHES_					0	0	0			REV__ENST00000487805.6_1_3:49737640-49742607:+|nuORF	REV__ENST00000487805.6_1_3:49737640-49742607:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7018127441406	2	472.701429	943.388304	0.75193	0.00035544	0.12383	5.8534E-05	0.87576	0.00041397	472.70158204049307	50.67	0.89647	50.691	50.387	51.283	0.020691					93	33	4	0	0	0	0.055495	3	11719	11719;11763;11812		50.855	0	1	5175000	+		10783	21567	6084	6084	13925;13926;13927	13925					-0.0856545351788327
GESESDSVR	9	Unmodified	_GESESDSVR_					0	0	0			REV__nc|ENSG00000163166|Q96ST2-3|IWS1	REV__nc|ENSG00000163166|Q96ST2-3|IWS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.212890625	2	483.21216	964.409768	0.52584	0.00025409	0.35069	0.00016946	0.87652	0.00042355	483.2124117664572	20.196	0.41098	20.141	19.789	20.2	-0.055099					19	14	2	0	0	0	0.33508	1	2450	2450		3.5965	0.60125	1	105210	+		10784	17042	6085	6085	13928	13928					-0.07386068489176978
GESESDSVR	9	Unmodified	_GESESDSVR_					0	0	0			REV__nc|ENSG00000163166|Q96ST2-3|IWS1	REV__nc|ENSG00000163166|Q96ST2-3|IWS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	483.21216	964.409768	0.15835	7.6517E-05	1.221	0.00059002	1.3794	0.00066654	483.2127601576808	19.996	0.29096	19.996	19.822	20.113	0	-0.10805	0.00045941	NaN	3.5965	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58836	+		10785	17042	6085	6085							-0.07386068489176978
GESESDSVR	9	Unmodified	_GESESDSVR_					0	0	0			REV__nc|ENSG00000163166|Q96ST2-3|IWS1	REV__nc|ENSG00000163166|Q96ST2-3|IWS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	483.21216	964.409768	0.3723	0.0001799	0.52994	0.00025607	0.90224	0.00043597	483.212408826965	20.285	0.3844	20.175	19.875	20.259	-0.11003	0.071263	-0.00020849	NaN	3.5965	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62178	+		10786	17042	6085	6085							-0.07386068489176978
GESFLIEIT	9	Unmodified	_GESFLIEIT_					0	0	0			REV__ENSG00000039123|ENST00000230640|MTREX	REV__ENSG00000039123|ENST00000230640|MTREX	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.74969482421875	2	504.76604	1007.51753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.808	1	75.862	75.362	76.362	0.053413								0	0	0	0.19804	1	19486	19486		23.148	3.7094	1		+		10787	13519	6086	6086	13929	13929					0.014069281121805943
GESIEKKI	8	Unmodified	_GESIEKKI_					0	0	0			REV__nc|ENSG00000114416|P51114-2|FXR1	REV__nc|ENSG00000114416|P51114-2|FXR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2779541015625	2	452.260925	902.507297	0.27694	0.00012525	-2.7739	-0.0012545	-2.497	-0.0011293	452.2596956906635	72.572	0.29449	72.572	72.456	72.75	0					15	10	2	0	0	0	0.34319	1	18547	18547		5.7604	0	1	66727	+		10788	14833	6087	6087	13930	13930					0.052143651776077604
GESLCMTVL	9	Unmodified	_GESLCMTVL_					0	0	0			REV__ENST00000346693.8_1_X:149935131-149935296:-|nuORF	REV__ENST00000346693.8_1_X:149935131-149935296:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7275390625	2	476.727546	951.440539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.387	1	74.439	73.939	74.939	0.052361								0	0	0	0.18374	1	19052	19052		26.884	2.2098	1		+		10789	20153	6088	6088	13931	13931					-0.03712329700158534
GESLSFPV	8	Unmodified	_GESLSFPV_					0	0	0		ENST00000344651.4_1_12:121160374-121160593:+|nuORF	ENST00000344651.4_1_12:121160374-121160593:+|nuORF	ENST00000344651.4_1_12:121160374-121160593:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.92230224609375	2	418.213443	834.412334	-0.38198	-0.00015975	0.13751	5.7511E-05	-0.24447	-0.00010224	418.21342186075066	39.506	0.56166	39.506	39.215	39.777	0					33	20	2	0	0	0	0.34092	1	8370	8370		8.5933	2.8329	1	194090			10790	9555	6089	6089	13932	13932					-0.011495682935674267
GESPGLSGLL	10	Unmodified	_GESPGLSGLL_					0	0	0			REV__ENST00000229270.8_1_12:6979816-6979882:+|nuORF	REV__ENST00000229270.8_1_12:6979816-6979882:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7774658203125	2	465.250557	928.486562	0.5056	0.00023523	-1.693	-0.00078765	-1.1874	-0.00055242	465.2496886948904	74.979	0.42894	74.947	74.755	75.184	-0.031479					24	15	2	0	0	0	0.28434	1	19222	19222		13.906	0	1	223690	+		10791	19457	6090	6090	13933	13933					0.01945774797957256
GESRWEKPDDF	11	Unmodified	_GESRWEKPDDF_					0	0	0		nc|ENSG00000120688|O75554-2|WBP4;ENSG00000120688|ENST00000379487|WBP4	nc|ENSG00000120688|O75554-2|WBP4	nc|ENSG00000120688|O75554-2|WBP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2920227050781	3	455.873841	1364.59969	0.21505	9.8038E-05	-0.083686	-3.815E-05	0.13137	5.9888E-05	455.8739589865425	40.505	0.30368	40.604	40.532	40.835	0.099407					11	10	2	0	0	0	0.33287	1	8624	8624		2.8433	1.3882	1	155190			10792	2956	6091	6091	13934	13934					-0.06802201546815922
GESVYLQLKS	10	Unmodified	_GESVYLQLKS_					0	0	0		ENST00000547904.1_1_12:108297110-108297695:-|nuORF	ENST00000547904.1_1_12:108297110-108297695:-|nuORF	ENST00000547904.1_1_12:108297110-108297695:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.783447265625	2	562.303321	1122.59209	0.27135	0.00015258	0.11463	6.4458E-05	0.38598	0.00021704	562.3034577333804	42.985	0.33324	42.985	42.816	43.149	0					19	11	2	0	0	0	0.31696	1	9436	9436		10.151	0	1	191900			10793	11775	6092	6092	13935	13935					0.035696909235639396
GETRLALVQ	9	Unmodified	_GETRLALVQ_					0	0	0		LDHC|p.Q236Kfs*9|1|0.42|ENSG00000166796|chr11:18438639-18438639|T/-|frameshift_variant;ENSG00000166796|ENST00000541669|LDHC	LDHC|p.Q236Kfs*9|1|0.42|ENSG00000166796|chr11:18438639-18438639|T/-|frameshift_variant	LDHC|p.Q236Kfs*9|1|0.42|ENSG00000166796|chr11:18438639-18438639|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7979736328125	2	493.785099	985.555644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.076	1	45.076	44.576	45.576	0								0	0	0	0.11063	1	10045	10045		43.858	7.7313	1				10794	6114	6093	6093	13936	13936					0.06228858817519267
GETRLALVQ	9	Unmodified	_GETRLALVQ_					0	0	0		LDHC|p.Q236Kfs*9|1|0.42|ENSG00000166796|chr11:18438639-18438639|T/-|frameshift_variant;ENSG00000166796|ENST00000541669|LDHC	LDHC|p.Q236Kfs*9|1|0.42|ENSG00000166796|chr11:18438639-18438639|T/-|frameshift_variant	LDHC|p.Q236Kfs*9|1|0.42|ENSG00000166796|chr11:18438639-18438639|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.79754638671875	2	493.785099	985.555644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.11	1	45.185	44.685	45.685	0.075047								0	0	0	0.12746	1	10045	10045		39.95	3.8227	1				10795	6114	6093	6093	13937	13937					0.06228858817519267
GETRTLIL	8	Unmodified	_GETRTLIL_					0	0	0			REV__nc|ENSG00000181322|Q86XW9-3|NME9	REV__nc|ENSG00000181322|Q86XW9-3|NME9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.75848388671875	2	451.768917	901.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.3	1	61.3	60.8	61.8	0								0	0	0	0.33625	1	15050	15050		20.871	2.7362	1		+		10796	18143	6094	6094	13938	13938					0.06858071414524147
GETSKTTAQV	10	Unmodified	_GETSKTTAQV_					0	0	0			REV__ENST00000475614.6_1_1:42929358-42929523:+|nuORF	REV__ENST00000475614.6_1_1:42929358-42929523:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2623291015625	2	511.261653	1020.50875	0.20164	0.00010309	0.67119	0.00034315	0.87283	0.00044624	511.2621026256872	57.82	1.0511	57.803	57.416	58.467	-0.0172					103	38	4	0	0	0	0.26265	1	14078	14078		24.991	0.31707	1	10443000	+		10797	21408	6095	6095	13939	13939					-0.0006804552429002797
GEVGTLKLAK	10	Unmodified	_GEVGTLKLAK_					0	0	0			REV__nc|ENSG00000119326|Q9UBT7-2|CTNNAL1	REV__nc|ENSG00000119326|Q9UBT7-2|CTNNAL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.31134033203125	2	508.310949	1014.60735	-0.0024048	-1.2224E-06	0.65849	0.00033472	0.65608	0.0003335	508.31137389775535	18.898	0.57157	18.84	18.57	19.142	-0.058174					35	19	2	0	0	0	0.24105	1	2064	2064		27.629	1.3607	1	85620	+		10798	15036	6096	6096	13940	13940					0.10062602511413843
GEVILDNLF	9	Unmodified	_GEVILDNLF_					0	0	0		ENSG00000110975|ENST00000228567|SYT10;SYT10|p.Y402Lfs*9|1|0.03|ENSG00000110975|chr12:33382515-33382516|-/G|frameshift_variant;nc|ENSG00000134207|Q5T7P8-2|SYT6;ENSG00000134207|ENST00000610222|SYT6	ENSG00000110975|ENST00000228567|SYT10	ENSG00000110975|ENST00000228567|SYT10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.885498046875	2	510.274032	1018.53351	0.3928	0.00020044	-2.1974	-0.0011213	-1.8046	-0.00092086	510.2724925985232	93.11	0.40125	93.11	92.917	93.318	0.00046539					62	42	2	0	0	0	0.24848	1	24776	24776		13.906	0.86358	1	128070			10799	2340	6097	6097	13941	13941					0.024986343490809304
GEVKLKYR	8	Unmodified	_GEVKLKYR_					0	0	0			REV__nc|ENSG00000041982|P24821-6|TNC	REV__nc|ENSG00000041982|P24821-6|TNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.78790283203125	2	496.798009	991.581465	0.19478	9.6765E-05	0.62022	0.00030812	0.815	0.00040489	496.7986171957163	33.623	0.5254	33.689	33.469	33.995	0.066704					39	18	3	0	0	0	0.41758	1	6628	6628		16.942	1.0951	1	340050	+		10800	13528	6098	6098	13942	13942					0.08533753059805349
GEVKPLSV	8	Unmodified	_GEVKPLSV_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.9066162109375	2	414.744911	827.475269	-0.19975	-8.2847E-05	0.36952	0.00015326	0.16977	7.0411E-05	414.7449883906635	41.012	0.72522	41.012	40.688	41.413	0					40	26	2	0	0	0	0.33245	1	8742	8742		13.508	0	1	230720	+		10801	15254	6099	6099	13943	13943					0.05462997494475985
GEVKPLSV	8	Unmodified	_GEVKPLSV_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.9066162109375	2	414.744911	827.475269	0.33382	0.00013845	0.19839	8.2281E-05	0.53221	0.00022073	414.7447896046908	40.859	0.89937	40.951	40.585	41.484	0.09267					47	33	2	0	0	0	0.31375	1	8664	8664		8.5933	0	1	167660	+		10802	15254	6099	6099	13944	13944					0.05462997494475985
GEVKPLSV	8	Unmodified	_GEVKPLSV_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.90655517578125	2	414.744911	827.475269	0.083236	3.4522E-05	0.28142	0.00011672	0.36465	0.00015124	414.7448361183779	40.809	0.83704	40.908	40.479	41.316	0.099407					43	30	2	0	0	0	0.31375	1	8633	8633		13.508	0	1	181020	+		10803	15254	6099	6099	13945	13945					0.05462997494475985
GEVLRRAK	8	Unmodified	_GEVLRRAK_					0	0	0		ENSG00000166415|ENST00000360509|WDR72;WDR72|p.D837Mfs*7|1|0.32|ENSG00000166415|chr15:53615697-53615698|-/TTCAT|frameshift_variant	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.16180419921875	2	464.787976	927.561398	0.091752	4.2645E-05	-1.2629	-0.000587	-1.1712	-0.00054436	464.7872679306323	27.245	0.45549	27.234	27.014	27.469	-0.01156					26	15	2	0	0	0	0.34247	1	4642	4642		4.756	0	1	97268			10804	6076	6100	6100	13946	13946					0.09472002119844092
GEVLRRAK	8	Unmodified	_GEVLRRAK_					0	0	0		ENSG00000166415|ENST00000360509|WDR72;WDR72|p.D837Mfs*7|1|0.32|ENSG00000166415|chr15:53615697-53615698|-/TTCAT|frameshift_variant	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	464.787976	927.561398	-0.11656	-5.4175E-05	-1.2339	-0.00057351	-1.3505	-0.00062768	464.7873756864136	27.19	0.37251	27.19	27.007	27.38	0	-0.0067889	-3.5984E-05	NaN	4.756	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80597			10805	6076	6100	6100							0.09472002119844092
GEVLRRAK	8	Unmodified	_GEVLRRAK_					0	0	0		ENSG00000166415|ENST00000360509|WDR72;WDR72|p.D837Mfs*7|1|0.32|ENSG00000166415|chr15:53615697-53615698|-/TTCAT|frameshift_variant	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	464.787976	927.561398	-0.14377	-6.6821E-05	-0.9959	-0.00046288	-1.1397	-0.00052971	464.7874914305429	27.188	0.36583	27.167	26.955	27.321	-0.021412	-0.030182	0.00018526	NaN	4.756	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80156			10806	6076	6100	6100							0.09472002119844092
GEVPVLVI	8	Unmodified	_GEVPVLVI_					0	0	0			REV__ENSG00000125962|ENST00000473968|ARMCX5	REV__ENSG00000125962|ENST00000473968|ARMCX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.257568359375	2	413.257654	824.500755	0.038932	1.6089E-05	-0.01824	-7.5377E-06	0.020693	8.5514E-06	413.2575663648208	66.912	1.1911	66.898	66.511	67.702	-0.013596					116	41	4	0	0	0	0.20019	1	16837	16837		42.968	2.5194	1	4961900	+		10807	15292	6101	6101	13947	13947					0.08148472016898722
GEVRGHSTRPL	11	Unmodified	_GEVRGHSTRPL_					0	0	0		nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-4|TNC	nc|ENSG00000041982|P24821-4|TNC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.5650329589844	3	403.554666	1207.64217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.723	1	34.723	34.223	35.223	0								0	0	0	0.34127	1	6877	6877		5.5233	0	1				10808	608	6102	6102	13948	13948					0.04665238372103886
GEVSVLATPV	10	Unmodified	_GEVSVLATPV_					0	0	0			REV__ENST00000577414.1_19:47730212-47730269:+|nuORF	REV__ENST00000577414.1_19:47730212-47730269:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2854919433594	2	486.274032	970.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.737	1	13.671	13.171	14.171	-0.066068								0	0	0	0.33661	1	513	513		20.454	0	1		+		10809	22460	6103	6103	13949	13949					0.04706634349099659
GEVTSLLKL	9	Unmodified	_GEVTSLLKL_					0	0	0		nc|ENSG00000166886|Q15742-2|NAB2;nc|ENSG00000166886|Q15742-3|NAB2;ENSG00000166886|ENST00000300131|NAB2	nc|ENSG00000166886|Q15742-2|NAB2	nc|ENSG00000166886|Q15742-2|NAB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2918701171875	2	480.292225	958.569897	0.04878	2.3429E-05	-0.04755	-2.2838E-05	0.0012301	5.9083E-07	480.2920134176698	59.447	0.59877	59.447	59.188	59.787	0					34	20	3	0	0	0	0.10197	1	14474	14474		37.974	3.5723	1	461540			10810	6126	6104	6104	13950	13950					0.08895511245816579
GEWFLDSV	8	Unmodified	_GEWFLDSV_					0	0	0		ENST00000517309.5_1_8:97285615-97299297:+|nuORF	ENST00000517309.5_1_8:97285615-97299297:+|nuORF	ENST00000517309.5_1_8:97285615-97299297:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7245178222656	2	476.724175	951.433798	0.31717	0.0001512	0.71114	0.00033902	1.0283	0.00049022	476.7244376626245	30.135	0.48019	30.163	29.901	30.382	0.027946					28	16	2	0	0	0	0.4397	1	5480	5480		9.3474	2.6243	1	153920			10811	11434	6105	6105	13951	13951					-0.043861832648417476
GEWFLDSV	8	Unmodified	_GEWFLDSV_					0	0	0		ENST00000517309.5_1_8:97285615-97299297:+|nuORF	ENST00000517309.5_1_8:97285615-97299297:+|nuORF	ENST00000517309.5_1_8:97285615-97299297:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	476.724175	951.433798	0.2559	0.000122	1.2211	0.00058213	1.477	0.00070412	476.72478598710296	30.101	0.53073	30.101	29.888	30.418	0	-0.035644	0.00019752	NaN	9.3474	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169840			10812	11434	6105	6105							-0.043861832648417476
GEWFLDSV	8	Unmodified	_GEWFLDSV_					0	0	0		ENST00000517309.5_1_8:97285615-97299297:+|nuORF	ENST00000517309.5_1_8:97285615-97299297:+|nuORF	ENST00000517309.5_1_8:97285615-97299297:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	476.724175	951.433798	-0.053903	-2.5697E-05	1.0481	0.00049967	0.99423	0.00047397	476.72475528995545	30.12	0.4707	30.147	29.864	30.335	0.027157	0.0098298	3.2599E-05	NaN	9.3474	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158620			10813	11434	6105	6105							-0.043861832648417476
GEYEFRVKAVN	11	Unmodified	_GEYEFRVKAVN_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2633361816406	3	437.894577	1310.6619	0.066582	2.9156E-05	0.66591	0.0002916	0.73249	0.00032075	437.8950429443009	38.576	0.56923	38.667	38.373	38.942	0.090881					29	20	2	0	0	0	0.3299	1	8075	8075		6.6235	3.2677	1	319850			10814	5186	6106	6106	13952	13952					0.018995695921830702
GEYIRPIL	8	Unmodified	_GEYIRPIL_					0	0	0			REV__L1PA11_dup3980|chr21:5561002-5564111:-|1.0845136525595764|0.1273465350769654|3.09|530.0|63|2|sense	REV__L1PA11_dup3980|chr21:5561002-5564111:-|1.0845136525595764|0.1273465350769654|3.09|530.0|63|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.77972412109375	2	480.779285	959.544017	0.099329	4.7755E-05	0.43972	0.00021141	0.53904	0.00025916	480.7793864049738	67.184	0.944	67.168	66.867	67.811	-0.016296					87	32	4	0	0	0	0.25425	1	17001	17001		36.044	0	1	3017100	+		10815	22804	6107	6107	13953	13953					0.06262661794187352
GEYIRPIL	8	Unmodified	_GEYIRPIL_					0	0	0			REV__L1PA11_dup3980|chr21:5561002-5564111:-|1.0845136525595764|0.1273465350769654|3.09|530.0|63|2|sense	REV__L1PA11_dup3980|chr21:5561002-5564111:-|1.0845136525595764|0.1273465350769654|3.09|530.0|63|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2808837890625	2	480.779285	959.544017	0.099329	4.7755E-05	0.43972	0.00021141	0.53904	0.00025916	480.7793864049738	67.184	0.944	67.168	66.867	67.811	-0.016296					87	32	4	0	0	0	0.32886	1	16993	16993		21.747	0	1	3017100	+		10816	22804	6107	6107	13954	13954					0.06262661794187352
GEYIRPIL	8	Unmodified	_GEYIRPIL_					0	0	0			REV__L1PA11_dup3980|chr21:5561002-5564111:-|1.0845136525595764|0.1273465350769654|3.09|530.0|63|2|sense	REV__L1PA11_dup3980|chr21:5561002-5564111:-|1.0845136525595764|0.1273465350769654|3.09|530.0|63|2|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	480.779285	959.544017	0.15534	7.4684E-05	0.34389	0.00016533	0.49923	0.00024002	480.7793635775812	67.198	1.0608	67.198	66.881	67.942	0	0.018707	-2.1048E-05	NaN	36.044	100	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3013800	+		10817	22804	6107	6107							0.06262661794187352
GEYIRPIL	8	Unmodified	_GEYIRPIL_					0	0	0			REV__L1PA11_dup3980|chr21:5561002-5564111:-|1.0845136525595764|0.1273465350769654|3.09|530.0|63|2|sense	REV__L1PA11_dup3980|chr21:5561002-5564111:-|1.0845136525595764|0.1273465350769654|3.09|530.0|63|2|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	480.779285	959.544017	0.19335	9.2959E-05	0.32012	0.0001539	0.51347	0.00024686	480.7793371622105	67.095	1.0543	67.173	66.871	67.925	0.078041	-0.006692	-4.3908E-05	NaN	36.044	102	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3072100	+		10818	22804	6107	6107							0.06262661794187352
GEYKRKRRQ	9	Unmodified	_GEYKRKRRQ_					0	0	0		nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A;ENSG00000198826|ENST00000361627|ARHGAP11A;ENST00000564902.5_1_15:30927763-30936864:+|nuORF;nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A;ARHGAP11A|p.M519Ifs*14|1|0.45|ENSG00000198826|chr15:32636330-32636330|G/-|frameshift_variant	nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2323303222656	3	407.570539	1219.68979	-0.40145	-0.00016362	-0.21924	-8.9357E-05	-0.62069	-0.00025298	407.5703391502085	13.241	0.20208	13.174	13.073	13.275	-0.067496					9	6	2	0	0	0	0.26127	1	352	352		2.7352	0.64919	1	32082			10819	8136	6108	6108	13955	13955					0.08872937362934863
GEYKRKRRQ	9	Unmodified	_GEYKRKRRQ_					0	0	0		nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A;ENSG00000198826|ENST00000361627|ARHGAP11A;ENST00000564902.5_1_15:30927763-30936864:+|nuORF;nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A;ARHGAP11A|p.M519Ifs*14|1|0.45|ENSG00000198826|chr15:32636330-32636330|G/-|frameshift_variant	nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	407.570539	1219.68979	-0.35355	-0.0001441	-0.019506	-7.95E-06	-0.37306	-0.00015205	407.57047118321725	13.26	0.18025	13.16	13.069	13.249	-0.099291	-0.0097482	-4.3818E-05	NaN	2.7352	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29080			10820	8136	6108	6108							0.08872937362934863
GEYQGRVLF	9	Unmodified	_GEYQGRVLF_					0	0	0		nc|ENSG00000177707|Q9NQS3-2|NECTIN3;nc|ENSG00000177707|Q9NQS3-3|NECTIN3;ENSG00000177707|ENST00000485303|NECTIN3	nc|ENSG00000177707|Q9NQS3-2|NECTIN3	nc|ENSG00000177707|Q9NQS3-2|NECTIN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.33203125	2	534.777274	1067.53999	0.4208	0.00022503	0.32225	0.00017233	0.74305	0.00039736	534.7773249327223	37.921	0.58229	38.018	37.712	38.294	0.097527					44	20	3	0	0	0	0.25202	1	7908	7908		6.7232	6.7232	1	387730			10821	7012	6109	6109	13956	13956					0.008925723004722386
GEYQGRVLF	9	Unmodified	_GEYQGRVLF_					0	0	0		nc|ENSG00000177707|Q9NQS3-2|NECTIN3;nc|ENSG00000177707|Q9NQS3-3|NECTIN3;ENSG00000177707|ENST00000485303|NECTIN3	nc|ENSG00000177707|Q9NQS3-2|NECTIN3	nc|ENSG00000177707|Q9NQS3-2|NECTIN3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	534.777274	1067.53999	0.52677	0.0002817	-0.075935	-4.0609E-05	0.45083	0.00024109	534.7771489751154	38.059	0.49966	38.059	37.82	38.32	0	0.012723	-0.00030868	NaN	6.7232	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344240			10822	7012	6109	6109							0.008925723004722386
GEYQGRVLF	9	Unmodified	_GEYQGRVLF_					0	0	0		nc|ENSG00000177707|Q9NQS3-2|NECTIN3;nc|ENSG00000177707|Q9NQS3-3|NECTIN3;ENSG00000177707|ENST00000485303|NECTIN3	nc|ENSG00000177707|Q9NQS3-2|NECTIN3	nc|ENSG00000177707|Q9NQS3-2|NECTIN3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	534.777274	1067.53999	0.38744	0.0002072	0.19109	0.00010219	0.57853	0.00030939	534.7773069159942	37.971	0.47298	38.062	37.821	38.294	0.090881	0.01556	-2.3081E-05	NaN	6.7232	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393830			10823	7012	6109	6109							0.008925723004722386
GFAFSPGIIS	10	Unmodified	_GFAFSPGIIS_					0	0	0		ENSG00000184271|ENST00000333640|POU6F1	ENSG00000184271|ENST00000333640|POU6F1	ENSG00000184271|ENST00000333640|POU6F1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7738342285156	2	498.263468	994.512382	0.59905	0.00029849	0.39539	0.00019701	0.99444	0.00049549	498.2637042624096	78.629	0.44431	78.687	78.554	78.999	0.058151					24	17	2	0	0	0	0.2593	1	20397	20397		25.399	2.2509	1	86390			10824	7442	6110	6110	13957	13957					0.014906690402540335
GFAWARPR	8	Unmodified	_GFAWARPR_					0	0	0		ENST00000454487.6_1_4:1090522-1107300:-|nuORF	ENST00000454487.6_1_4:1090522-1107300:-|nuORF	ENST00000454487.6_1_4:1090522-1107300:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7502746582031	2	480.761761	959.508969	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.764	1	19.708	19.208	20.208	-0.055693								0	0	0	0.37664	1	2331	2331		2.5775	0	1				10825	10680	6111	6111	13958	13958					0.027594637768856956
GFDSDLLTL	9	Unmodified	_GFDSDLLTL_					0	0	0		ENST00000559694.5_1_14:24526437-24530034:+|nuORF;ENSG00000186648|ENST00000342740|CARMIL3	ENST00000559694.5_1_14:24526437-24530034:+|nuORF	ENST00000559694.5_1_14:24526437-24530034:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.75048828125	2	490.75039	979.486227	0.54298	0.00026647	-0.18034	-8.8501E-05	0.36264	0.00017797	490.7502461234518	85.269	1.3562	85.269	84.895	86.251	0					148	51	4	0	0	0	0.013258	4	22376	22376;22424;22466;22608		74.423	16.951	1	5079400			10826	7635	6112	6112	13959;13960;13961;13962	13959					-0.004336449219067617
GFDSDLLTL	9	Unmodified	_GFDSDLLTL_					0	0	0		ENST00000559694.5_1_14:24526437-24530034:+|nuORF;ENSG00000186648|ENST00000342740|CARMIL3	ENST00000559694.5_1_14:24526437-24530034:+|nuORF	ENST00000559694.5_1_14:24526437-24530034:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7505187988281	2	490.75039	979.486227	0.52712	0.00025868	-0.23049	-0.00011311	0.29663	0.00014557	490.7502322903717	85.214	1.2474	85.294	84.885	86.132	0.080887					139	47	4	0	0	0	0.013258	5	22343	22343;22391;22437;22489;22560		74.423	32.328	1	4879600			10827	7635	6112	6112	13963;13964;13965;13966;13967	13963					-0.004336449219067617
GFDSDLLTL	9	Unmodified	_GFDSDLLTL_					0	0	0		ENST00000559694.5_1_14:24526437-24530034:+|nuORF;ENSG00000186648|ENST00000342740|CARMIL3	ENST00000559694.5_1_14:24526437-24530034:+|nuORF	ENST00000559694.5_1_14:24526437-24530034:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7505187988281	2	490.75039	979.486227	0.54371	0.00026683	-0.19434	-9.5372E-05	0.34937	0.00017146	490.7502400059471	85.307	1.3667	85.294	84.941	86.308	-0.01284					146	52	4	0	0	0	0.013258	4	22371	22371;22420;22468;22520		74.423	16.951	1	4552700			10828	7635	6112	6112	13968;13969;13970;13971	13968					-0.004336449219067617
GFDVDVSYFT	10	Unmodified	_GFDVDVSYFT_					0	0	0		ENSG00000151360|ENST00000252505|ALLC	ENSG00000151360|ENST00000252505|ALLC	ENSG00000151360|ENST00000252505|ALLC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.2898559570312	2	575.258579	1148.50261	0.42404	0.00024393	-0.14289	-8.2201E-05	0.28114	0.00016173	575.2582434639577	65.965	1.4978	65.965	65.19	66.688	0					116	53	3	0	0	0	0.17013	1	16483	16483		56.177	6.244	1	615750			10829	4957	6113	6113	13972	13972					-0.06570563755826697
GFEQLPGI	8	Unmodified	_GFEQLPGI_					0	0	0		ENST00000468888.6_1_3:33738366-33759324:-|nuORF	ENST00000468888.6_1_3:33738366-33759324:-|nuORF	ENST00000468888.6_1_3:33738366-33759324:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.5904541015625	2	430.729261	859.443968	-0.16042	-6.9096E-05	-0.6551	-0.00028217	-0.81552	-0.00035127	430.7291049789383	33.251	0.7151	33.307	32.852	33.567	0.056137					35	25	2	0	0	0	0.34185	1	6331	6331		2.5775	1.7838	1	63787			10830	10845	6114	6114	13973	13973					0.008624244603652187
GFFVNPIIT	9	Unmodified	_GFFVNPIIT_					0	0	0		ENST00000394318.7_1_17:37224095-37235479:-|nuORF	ENST00000394318.7_1_17:37224095-37235479:-|nuORF	ENST00000394318.7_1_17:37224095-37235479:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.27996826171875	2	504.28166	1006.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.001	1	84.078	83.578	84.578	0.077095								0	0	0	0.24522	1	21994	21994		7.9102	0.62092	1				10831	10068	6115	6115	13974	13974					0.04575545936938852
GFGPTDTVSL	10	Unmodified	_GFGPTDTVSL_					0	0	0			REV__ENST00000493104.5_1_17:73897660-73900929:-|nuORF	REV__ENST00000493104.5_1_17:73897660-73900929:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2474060058594	2	497.248015	992.481476	0.26501	0.00013178	-2.0223	-0.0010056	-1.7573	-0.00087382	497.2474362669713	52.671	0.41175	52.67	52.358	52.77	-0.00081253					29	14	3	0	0	0	0.091471	1	12388	12388		49.933	4.2334	1	785910	+		10832	21633	6116	6116	13975	13975					-0.015065290646703033
GFHDLLLF	8	Unmodified	_GFHDLLLF_					0	0	0			REV__chr10:89462624-89506310|321|10.73|0.6|4.16|-|1|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|89	REV__chr10:89462624-89506310|321|10.73|0.6|4.16|-|1|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|89	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.3133850097656	2	481.260728	960.506903	0.016647	8.0113E-06	0.53726	0.00025856	0.55391	0.00026657	481.2610512855675	61.979	1.3165	62.076	61.701	63.017	0.096985					69	47	2	0	0	0	0.33245	1	15318	15318		19.439	0	1	462130	+		10833	13165	6117	6117	13976	13976					0.02506990248434704
GFINVANRSA	10	Unmodified	_GFINVANRSA_					0	0	0			REV__nc|ENSG00000138376|Q99728-3|BARD1	REV__nc|ENSG00000138376|Q99728-3|BARD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.79296875	2	524.780348	1047.54614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.278	1	31.278	30.778	31.778	0								0	0	0	0.3629	1	5826	5826		9.3831	0	1		+		10834	15923	6118	6118	13977	13977					0.024270905319781377
GFLELVNFF	9	Unmodified	_GFLELVNFF_					0	0	0		nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3;ENST00000496157.5_1_7:99775584-99786236:+|nuORF;nc|ENSG00000292277|Q9UJ98-2|STAG3;ENST00000416602.6_1_7:66767701-66771051:+|nuORF	nc|ENSG00000292277|Q9UJ98|STAG3;ENST00000416602.6_1_7:66767701-66771051:+|nuORF	ENST00000416602.6_1_7:66767701-66771051:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3252563476562	2	543.286943	1084.55933	0.59141	0.0003213	0.11259	6.1171E-05	0.704	0.00038247	543.2869406541823	17.33	0.35044	17.27	17.18	17.53	-0.060429					16	11	2	0	0	0	0.26168	1	1668	1668		1.8442	0	1	30042			10835	849;10321	6119	6119	13978	13978					0.020435285913663392
GFLFHAVLF	9	Unmodified	_GFLFHAVLF_					0	0	0		ENST00000478260.5_1_11:3108637-3108949:-|nuORF	ENST00000478260.5_1_11:3108637-3108949:-|nuORF	ENST00000478260.5_1_11:3108637-3108949:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2574462890625	2	525.792195	1049.56984	0.20616	0.0001084	-1.1792	-0.00062001	-0.97303	-0.00051161	525.7913814860575	59.647	0.30506	59.743	59.55	59.855	0.095093					15	10	2	0	0	0	0.22431	1	14491	14491		20.871	0	1	226430			10836	10972	6120	6120	13979	13979					0.04703556036452028
GFLIDGYPREV	11	Unmodified	_GFLIDGYPREV_					0	0	0		nc|ENSG00000154027|Q9Y6K8-3|AK5;ENSG00000154027|ENST00000354567|AK5;nc|ENSG00000154027|Q9Y6K8-2|AK5;ENSG00000106992|ENST00000644144|AK1	nc|ENSG00000154027|Q9Y6K8-3|AK5	nc|ENSG00000154027|Q9Y6K8-3|AK5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3306884765625	2	633.32987	1264.64519	0.38416	0.0002433	0.0028185	1.7851E-06	0.38698	0.00024509	633.3298965656321	71.258	0.39302	71.258	71.128	71.521	0					22	13	2	0	0	0	0.3429	1	18118	18118		18.373	0.93045	1	307570			10837	5102	6121	6121	13980	13980					0.023450687061995268
GFLIDGYPREV	11	Unmodified	_GFLIDGYPREV_					0	0	0		nc|ENSG00000154027|Q9Y6K8-3|AK5;ENSG00000154027|ENST00000354567|AK5;nc|ENSG00000154027|Q9Y6K8-2|AK5;ENSG00000106992|ENST00000644144|AK1	nc|ENSG00000154027|Q9Y6K8-3|AK5	nc|ENSG00000154027|Q9Y6K8-3|AK5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3294677734375	2	633.32987	1264.64519	0.49319	0.00031235	-0.51754	-0.00032777	-0.02435	-1.5422E-05	633.3295001488605	67.548	0.59692	67.626	67.354	67.951	0.078041					46	20	3	0	0	0	0.24435	2	16948	16948;16999		27.223	4.5652	1	532440			10838	5102	6121	6121	13981;13982	13981					0.023450687061995268
GFLIDGYPREV	11	Unmodified	_GFLIDGYPREV_					0	0	0		nc|ENSG00000154027|Q9Y6K8-3|AK5;ENSG00000154027|ENST00000354567|AK5;nc|ENSG00000154027|Q9Y6K8-2|AK5;ENSG00000106992|ENST00000644144|AK1	nc|ENSG00000154027|Q9Y6K8-3|AK5	nc|ENSG00000154027|Q9Y6K8-3|AK5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3302001953125	2	633.32987	1264.64519	0.40201	0.00025461	-0.17903	-0.00011339	0.22298	0.00014122	633.3297477795372	67.632	0.76653	67.615	67.357	68.124	-0.016296					69	26	4	0	0	0	0.17507	2	17013	17013;17073		33.445	8.4539	1	931860			10839	5102	6121	6121	13983;13984	13983					0.023450687061995268
GFLIDGYPREV	11	Unmodified	_GFLIDGYPREV_					0	0	0		nc|ENSG00000154027|Q9Y6K8-3|AK5;ENSG00000154027|ENST00000354567|AK5;nc|ENSG00000154027|Q9Y6K8-2|AK5;ENSG00000106992|ENST00000644144|AK1	nc|ENSG00000154027|Q9Y6K8-3|AK5	nc|ENSG00000154027|Q9Y6K8-3|AK5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3296508789062	2	633.32987	1264.64519	0.5635	0.00035688	-0.18858	-0.00011943	0.37492	0.00023745	633.3298180692948	71.367	0.38473	71.341	71.187	71.571	-0.025833					21	13	2	0	0	0	0.3429	1	18146	18146		18.373	0	1	303530			10840	5102	6121	6121	13985	13985					0.023450687061995268
GFLTERDDIL	10	Unmodified	_GFLTERDDIL_					0	0	0		ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	ENSG00000115641|ENST00000530340|FHL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3433227539062	2	589.806228	1177.5979	0.5033	0.00029685	-1.6425	-0.00096877	-1.1392	-0.00067192	590.307860001545	85.703	0.19487	85.788	85.641	85.836	0.084251					8	6	2	0	0	0	0.31629	1	22477	22477		6.2058	0.9089	1	89291			10841	2665	6122	6122	13986	13986					0.016207894352419316
GFLVLMVVL	9	Unmodified	_GFLVLMVVL_					0	0	0		ENSG00000139182|ENST00000266546|CLSTN3;nc|ENSG00000139182|Q9BQT9-2|CLSTN3;ENST00000535313.1_1_12:7309311-7310674:+|nuORF;nc|ENSG00000139182|Q9BQT9-3|CLSTN3;ENST00000331148.5_1_12:7308690-7310592:+|nuORF	ENSG00000139182|ENST00000266546|CLSTN3	ENSG00000139182|ENST00000266546|CLSTN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.8063659667969	2	495.806457	989.598361	0.36375	0.00018035	-0.11932	-5.916E-05	0.24443	0.00012119	495.806145653808	80.862	1.1427	80.835	80.597	81.74	-0.026825					136	48	4	0	0	0	0.32415	1	21075	21075		5.2307	0	1	738180			10842	4215	6123	6123	13987	13987					0.10314537621388808
GFMAGLLSLS	10	Unmodified	_GFMAGLLSLS_					0	0	0		ENST00000524501.1_1_11:89867926-89868807:+|nuORF	ENST00000524501.1_1_11:89867926-89868807:+|nuORF	ENST00000524501.1_1_11:89867926-89868807:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.28173828125	2	498.265153	994.515753	0.69316	0.00034538	-2.7061	-0.0013483	-2.0129	-0.001003	498.2639088547651	78.836	0.38106	78.806	78.601	78.982	-0.030434					24	15	2	0	0	0	0.31867	1	20387	20387		18.146	0.011366	1	162300			10843	11521	6124	6124	13988	13988					0.018275958226013245
GFPLLYYLV	9	Unmodified	_GFPLLYYLV_					0	0	0			REV__ENST00000473770.5_1_22:32017296-32019834:-|nuORF	REV__ENST00000473770.5_1_22:32017296-32019834:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8079223632812	2	542.807511	1083.60047	0.75743	0.00041114	0.28766	0.00015615	1.0451	0.00056728	542.8075322403537	78.36	2.9728	78.419	77.513	80.486	0.058159					343	116	4	0	0	0	0.32415	1	20282	20282		5.2307	5.2307	1	1386000	+		10844	21384	6125	6125	13989	13989					0.06201289630848805
GFPLLYYLV	9	Unmodified	_GFPLLYYLV_					0	0	0			REV__ENST00000473770.5_1_22:32017296-32019834:-|nuORF	REV__ENST00000473770.5_1_22:32017296-32019834:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.807861328125	2	542.807511	1083.60047	0.93496	0.0005075	-0.0086134	-4.6754E-06	0.92634	0.00050283	542.8073887217688	78.34	3.3554	78.31	77.238	80.594	-0.030434					321	127	4	0	0	0	0.32415	1	20308	20308		5.2307	5.2307	1	1617500	+		10845	21384	6125	6125	13990	13990					0.06201289630848805
GFPTDATL	8	Unmodified	_GFPTDATL_					0	0	0		ENST00000474273.5_1_2:170663267-170663405:+|nuORF;ENST00000468600.1_1_2:170662301-170663405:+|nuORF;ENSG00000138385|ENST00000260956|SSB	ENST00000474273.5_1_2:170663267-170663405:+|nuORF	ENST00000474273.5_1_2:170663267-170663405:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2201843261719	2	411.205618	820.396684	-0.19202	-7.8959E-05	-2.0464	-0.00084151	-2.2385	-0.00092047	411.206889024853	19.565	0.39096	19.565	19.431	19.822	0					19	13	3	0	0	0	0.4397	1	2250	2250		9.3474	3.587	1	20799			10846	4145	6126	6126	13991	13991					-0.020698548106224735
GFQRIKRGFK	10	Unmodified	_GFQRIKRGFK_					0	0	0			REV__ENST00000347053.7_1_7:106842073-106842115:-|nuORF	REV__ENST00000347053.7_1_7:106842073-106842115:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.5872802734375	3	412.915646	1235.72511	0.074184	3.0632E-05	0.86566	0.00035744	0.93984	0.00038808	412.9147237322167	35.999	0.28661	35.999	35.83	36.117	0					13	10	2	0	0	0	0.31969	1	7279	7279		3.3196	0.82116	1	64283	+		10847	20156	6127	6127	13992	13992					0.11667599890733982
GFSPRSYFF	9	Unmodified	_GFSPRSYFF_					0	0	0		ENST00000477559.2_1_1:236347083-236385124:+|nuORF;ENSG00000077585|ENST00000366592|GPR137B	ENST00000477559.2_1_1:236347083-236385124:+|nuORF	ENST00000477559.2_1_1:236347083-236385124:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.266357421875	2	554.266542	1106.51853	0.45667	0.00025312	-0.37024	-0.00020521	0.086429	4.7905E-05	554.2661981280411	63.651	0.52438	63.651	63.443	63.967	0					43	18	3	0	0	0	0.079752	1	15822	15822		41.84	17.166	1	455220			10848	1095	6128	6128	13993	13993					-0.030468127282347268
GFSPRSYFF	9	Unmodified	_GFSPRSYFF_					0	0	0		ENST00000477559.2_1_1:236347083-236385124:+|nuORF;ENSG00000077585|ENST00000366592|GPR137B	ENST00000477559.2_1_1:236347083-236385124:+|nuORF	ENST00000477559.2_1_1:236347083-236385124:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2664184570312	2	554.266542	1106.51853	0.46777	0.00025927	-0.61878	-0.00034297	-0.15101	-8.37E-05	554.2659787137648	63.731	0.5672	63.723	63.478	64.045	-0.0085526					43	19	3	0	0	0	0.047483	1	15807	15807		53.833	26.949	1	542630			10849	1095	6128	6128	13994	13994					-0.030468127282347268
GFSPVIID	8	Unmodified	_GFSPVIID_					0	0	0		ENST00000466409.1_1_9:95874378-95875386:+|nuORF;ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENSG00000165233|ENST00000375464|CARD19	ENST00000466409.1_1_9:95874378-95875386:+|nuORF	ENST00000466409.1_1_9:95874378-95875386:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.2314147949219	2	424.231636	846.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.888	1	59.983	59.483	60.483	0.095093								0	0	0	0.29147	1	14606	14606		30.225	3.8835	1				10850	5938	6129	6129	13995	13995					0.01935308603140129
GFSPVIID	8	Unmodified	_GFSPVIID_					0	0	0		ENST00000466409.1_1_9:95874378-95875386:+|nuORF;ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENSG00000165233|ENST00000375464|CARD19	ENST00000466409.1_1_9:95874378-95875386:+|nuORF	ENST00000466409.1_1_9:95874378-95875386:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.2315368652344	2	424.231636	846.448719	0.0011423	4.8461E-07	2.197	0.00093203	2.1981	0.00093252	424.2315960134909	59.696	0.96701	59.685	59.28	60.247	-0.011486					91	33	4	0	0	0	0.23581	1	14615	14615		38.151	2.107	1	1697600			10851	5938	6129	6129	13996	13996					0.01935308603140129
GFSRFILFG	9	Unmodified	_GFSRFILFG_					0	0	0			REV__nc|ENSG00000178462|A6NHL2-2|TUBAL3	REV__nc|ENSG00000178462|A6NHL2-2|TUBAL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8207397460938	2	522.287277	1042.56	0.55237	0.0002885	-2.2853	-0.0011936	-1.733	-0.00090511	522.2859141959503	90.28	0.35896	90.281	90.115	90.474	0.00039673					42	24	3	0	0	0	0.24848	1	23874	23874		13.906	1.3745	1	134980	+		10852	18038	6130	6130	13997	13997					0.0404236803110507
GFVRLALRHGG	11	Unmodified	_GFVRLALRHGG_					0	0	0		nc|ENSG00000106384|Q86VF5-2|MOGAT3	nc|ENSG00000106384|Q86VF5-2|MOGAT3	nc|ENSG00000106384|Q86VF5-2|MOGAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8455810546875	2	591.846356	1181.67816	0.014009	8.291E-06	-1.402	-0.00082979	-1.388	-0.0008215	591.8462959262832	107.44	0.076721	107.44	107.38	107.45	0					24	11	3	0	0	0	0.46277	1	28305	28305		2.9952	0.93549	1	1653600			10853	12640	6131	6131	13998	13998					0.09458740339573524
GFVRLALRHGG	11	Unmodified	_GFVRLALRHGG_					0	0	0		nc|ENSG00000106384|Q86VF5-2|MOGAT3	nc|ENSG00000106384|Q86VF5-2|MOGAT3	nc|ENSG00000106384|Q86VF5-2|MOGAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.844482421875	2	591.846356	1181.67816	0.19173	0.00011347	-2.8911	-0.0017111	-2.6994	-0.0015976	591.8458759415257	107.44	0.051285	107.43	107.39	107.44	-0.0085678					19	7	4	0	0	0	0.46277	1	28326	28326		2.9952	0	1	853740			10854	12640	6131	6131	13999	13999					0.09458740339573524
GFVRLALRHGG	11	Unmodified	_GFVRLALRHGG_					0	0	0		nc|ENSG00000106384|Q86VF5-2|MOGAT3	nc|ENSG00000106384|Q86VF5-2|MOGAT3	nc|ENSG00000106384|Q86VF5-2|MOGAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.8455810546875	2	591.846356	1181.67816	0.33567	0.00019867	-1.8832	-0.0011146	-1.5475	-0.0009159	591.8455459104377	107.42	0.068321	107.43	107.39	107.46	0.0067062					18	9	3	0	0	0	0.46277	1	28347	28347		2.9952	0.49676	1	651950			10855	12640	6131	6131	14000	14000					0.09458740339573524
GFWPLSLL	8	Unmodified	_GFWPLSLL_					0	0	0			REV__ENST00000352127.11_1_14:104177377-104177569:-|nuORF	REV__ENST00000352127.11_1_14:104177377-104177569:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7818908691406	2	466.765646	931.516739	0.0064351	3.0037E-06	-0.2956	-0.00013797	-0.28916	-0.00013497	466.7654282818869	52.161	0.56716	52.16	51.902	52.469	-0.00081253					48	20	3	0	0	0	0.33916	1	12306	12306		26.341	0	1	517200	+		10856	20166	6132	6132	14001	14001					0.048241782538070765
GFYFGGKMAET	11	Unmodified	_GFYFGGKMAET_					0	0	0		nc|ENSG00000166391|Q3SYC2-3|MOGAT2	nc|ENSG00000166391|Q3SYC2-3|MOGAT2	nc|ENSG00000166391|Q3SYC2-3|MOGAT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.2742309570312	2	604.276249	1206.53795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.411	1	82.485	81.985	82.985	0.073097								0	0	0	0.30959	1	21504	21504		17.113	0	1				10857	12815	6133	6133	14002	14002					-0.05706224499658674
GFYYVEIVC	9	Unmodified	_GFYYVEIVC_					0	0	0			REV__ENSG00000162975|ENST00000295082|KCNF1	REV__ENSG00000162975|ENST00000295082|KCNF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.2926635742188	2	546.757161	1091.49977	0.21695	0.00011862	-0.90783	-0.00049636	-0.69088	-0.00037774	546.7567131841615	61.374	0.95387	61.471	61.221	62.175	0.096985					79	34	4	0	0	0	0.25417	1	15184	15184		2.0598	2.0598	1	857620	+		10858	17027	6134	6134	14003	14003					-0.04232110414318413
GGAESHTFK	9	Unmodified	_GGAESHTFK_					0	0	0		ENST00000460900.1_1_14:105954779-105954845:+|nuORF;ENST00000496700.5_1_14:105954601-105954845:+|nuORF;ENSG00000213145|ENST00000392531|CRIP1	ENST00000460900.1_1_14:105954779-105954845:+|nuORF	ENST00000460900.1_1_14:105954779-105954845:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.22454833984375	2	467.224874	932.435195	-0.316	-0.00014764	0.46186	0.00021579	0.14586	6.8149E-05	467.2249543167939	13.411	0.43143	13.411	13.282	13.714	0					20	14	2	0	0	0	0.026579	1	423	423		61.602	46.764	1	132800			10859	8334	6135	6135	14004	14004					-0.033725491761060766
GGAESHTFK	9	Unmodified	_GGAESHTFK_					0	0	0		ENST00000460900.1_1_14:105954779-105954845:+|nuORF;ENST00000496700.5_1_14:105954601-105954845:+|nuORF;ENSG00000213145|ENST00000392531|CRIP1	ENST00000460900.1_1_14:105954779-105954845:+|nuORF	ENST00000460900.1_1_14:105954779-105954845:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2246398925781	2	467.224874	932.435195	-0.30113	-0.00014069	0.58306	0.00027242	0.28194	0.00013173	467.22510075088303	13.473	0.38945	13.374	13.249	13.638	-0.099291					24	13	3	0	0	0	0.017549	1	443	443		67.838	45.102	1	162510			10860	8334	6135	6135	14005	14005					-0.033725491761060766
GGAESHTFK	9	Unmodified	_GGAESHTFK_					0	0	0		ENST00000460900.1_1_14:105954779-105954845:+|nuORF;ENST00000496700.5_1_14:105954601-105954845:+|nuORF;ENSG00000213145|ENST00000392531|CRIP1	ENST00000460900.1_1_14:105954779-105954845:+|nuORF	ENST00000460900.1_1_14:105954779-105954845:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2246398925781	2	467.224874	932.435195	-0.1793	-8.3773E-05	0.66054	0.00030862	0.48124	0.00022485	467.22510025466687	13.506	0.47028	13.439	13.302	13.773	-0.067496					25	16	3	0	0	0	0.0045319	1	439	439		90.135	64.736	1	138340			10861	8334	6135	6135	14006	14006					-0.033725491761060766
GGAFFGEGS	9	Unmodified	_GGAFFGEGS_					0	0	0		nc|ENSG00000179954|A1L4H1-2|SSC5D;ENSG00000179954|ENST00000389623|SSC5D	nc|ENSG00000179954|A1L4H1-2|SSC5D	nc|ENSG00000179954|A1L4H1-2|SSC5D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.6797790527344	2	414.679768	827.344983	-0.022182	-9.1985E-06	0.032016	1.3277E-05	0.0098343	4.0781E-06	414.6797067661508	91.104	0.86925	91.104	90.758	91.628	0					141	67	3	0	0	0	0.30623	1	24156	24156		7.9102	0.62092	1	1526400			10862	7160	6136	6136	14007	14007					-0.07559598504508358
GGAFFGEGS	9	Unmodified	_GGAFFGEGS_					0	0	0		nc|ENSG00000179954|A1L4H1-2|SSC5D;ENSG00000179954|ENST00000389623|SSC5D	nc|ENSG00000179954|A1L4H1-2|SSC5D	nc|ENSG00000179954|A1L4H1-2|SSC5D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.6796569824219	2	414.679768	827.344983	0.31724	0.00013155	-0.30303	-0.00012566	0.014208	5.8916E-06	414.6795743976508	91.099	0.80544	91.19	90.816	91.621	0.090668					108	61	2	0	0	0	0.30623	2	24112	24112;24152		7.9102	2.6795	1	1849600			10863	7160	6136	6136	14008;14009	14008					-0.07559598504508358
GGAFFGEGS	9	Unmodified	_GGAFFGEGS_					0	0	0		nc|ENSG00000179954|A1L4H1-2|SSC5D;ENSG00000179954|ENST00000389623|SSC5D	nc|ENSG00000179954|A1L4H1-2|SSC5D	nc|ENSG00000179954|A1L4H1-2|SSC5D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.6798095703125	2	414.679768	827.344983	0.38779	0.00016081	-0.36066	-0.00014956	0.027125	1.1248E-05	414.6795099808253	91.176	0.89865	91.177	90.738	91.636	0.00046539					142	65	3	0	0	0	0.30623	2	24172	24172;24213		7.9102	2.6795	1	2444900			10864	7160	6136	6136	14010;14011	14010					-0.07559598504508358
GGDEEDEEGYN	11	Unmodified	_GGDEEDEEGYN_					0	0	0		nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8734130859375	2	607.210012	1212.40547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.1	1	118.07	117.57	118.57	-0.024147								0	0	0	0.3823	1	30543	30543		0	0	1				10865	12971	6137	6137	14012	14012					-0.1922362249338221
GGDEEDEEGYN	11	Unmodified	_GGDEEDEEGYN_					0	0	0		nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8720703125	2	607.210012	1212.40547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.35	1	119.32	118.82	119.82	-0.024361								0	0	0	0.3823	1	30811	30811		0	0	1				10866	12971	6137	6137	14013	14013					-0.1922362249338221
GGDEEDEEGYN	11	Unmodified	_GGDEEDEEGYN_					0	0	0		nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8722534179688	2	607.210012	1212.40547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.69	1	115.71	115.21	116.21	0.018738								0	0	0	0.3823	1	30045	30045		0	0	1				10867	12971	6137	6137	14014	14014					-0.1922362249338221
GGDEEDEEGYN	11	Unmodified	_GGDEEDEEGYN_					0	0	0		nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8717651367188	2	607.210012	1212.40547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.66	1	118.69	118.19	119.19	0.026253								0	0	0	0.3823	1	30719	30719		0	0	1				10868	12971	6137	6137	14015	14015					-0.1922362249338221
GGDEEDEEGYN	11	Unmodified	_GGDEEDEEGYN_					0	0	0		nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.2100830078125	2	607.210012	1212.40547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.98	1	120.01	119.51	120.51	0.027756								0	0	0	0.3823	1	31014	31014		0	0	1				10869	12971	6137	6137	14016	14016					-0.1922362249338221
GGDHLCPEFF	10	Unmodified	_GGDHLCPEFF_					0	0	0			REV__ENSG00000164010|ENST00000372517|ERMAP	REV__ENSG00000164010|ENST00000372517|ERMAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7809448242188	2	561.239667	1120.46478	0.44067	0.00024732	0.223	0.00012516	0.66367	0.00037248	561.2401539609355	82.655	1.4967	82.728	82.215	83.712	0.073097					96	58	3	0	0	0	0.31847	1	21853	21853		6.7232	0	1	509790	+		10870	17113	6138	6138	14017	14017					-0.09063353222268233
GGFAPPLSTLL	11	Unmodified	_GGFAPPLSTLL_					0	0	0			REV__ENST00000565644.5_1_16:87865325-87865511:-|nuORF	REV__ENST00000565644.5_1_16:87865325-87865511:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.29296875	2	536.8055	1071.59645	0.47208	0.00025342	0.15954	8.5642E-05	0.63162	0.00033906	536.8055886688268	67.518	1.0132	67.596	67.296	68.31	0.078041					99	35	5	0	0	0	0.23983	1	17109	17109		27.629	0.74515	1	3124000	+		10871	22360	6139	6139	14018	14018					0.06351200137146407
GGFFSSFMK	9	Oxidation (M)	_GGFFSSFM(Oxidation (M))K_		GGFFSSFM(1)K		GGFFSSFM(69)K	0	0	1		nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2	nc|ENSG00000143322|P42684-4|ABL2	nc|ENSG00000143322|P42684-4|ABL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2847290039062	2	512.233853	1022.45315	0.35904	0.00018391	0.14757	7.5592E-05	0.50662	0.00025951	512.2338333987037	52.429	0.67387	52.429	52.151	52.824	0					45	23	2	0	0	0	0.059216	1	12336	12336		69.105	36.799	1	890730			10872	4500	6140	6140	14019	14019		568			-0.05717550245583425
GGFFSSFMK	9	Oxidation (M)	_GGFFSSFM(Oxidation (M))K_		GGFFSSFM(1)K		GGFFSSFM(60)K	0	0	1		nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2	nc|ENSG00000143322|P42684-4|ABL2	nc|ENSG00000143322|P42684-4|ABL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2847900390625	2	512.233853	1022.45315	0.30732	0.00015742	-0.039509	-2.0238E-05	0.26781	0.00013718	512.2340329966454	52.351	0.76183	52.401	52.06	52.822	0.050575					60	27	3	0	0	0	0.08298	1	12318	12318		60.074	35.4	1	897170			10873	4500	6140	6140	14020	14020		568			-0.05717550245583425
GGFFSSFMK	9	Oxidation (M)	_GGFFSSFM(Oxidation (M))K_		GGFFSSFM(1)K		GGFFSSFM(60)K	0	0	1		nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2	nc|ENSG00000143322|P42684-4|ABL2	nc|ENSG00000143322|P42684-4|ABL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2847290039062	2	512.233853	1022.45315	0.1541	7.8936E-05	0.34193	0.00017515	0.49604	0.00025409	512.2339762620239	52.685	0.82127	52.684	52.305	53.126	-0.00080872					54	29	2	0	0	0	0.08298	1	12365	12365		60.074	35.4	1	842020			10874	4500	6140	6140	14021	14021		568			-0.05717550245583425
GGFPVVGRR	9	Unmodified	_GGFPVVGRR_					0	0	0		ENST00000457685.6_1_20:45141901-45142186:-|nuORF	ENST00000457685.6_1_20:45141901-45142186:-|nuORF	ENST00000457685.6_1_20:45141901-45142186:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.88323974609375	2	472.774868	943.535184	-0.092793	-4.387E-05	-0.7388	-0.00034929	-0.8316	-0.00039316	472.7744805828936	14.608	0.4096	14.542	14.289	14.699	-0.066067					42	14	4	0	0	0	0.26117	1	702	702		0.6015	0.14316	1	105800			10875	10707	6141	6141	14022	14022					0.061157329483762624
GGGGGRGS	8	Unmodified	_GGGGGRGS_					0	0	0		ENST00000579055.5_1_17:72281302-72310327:+|nuORF;ENSG00000167768|ENST00000252244|KRT1;CON__P04264	ENST00000579055.5_1_17:72281302-72310327:+|nuORF	ENST00000579055.5_1_17:72281302-72310327:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.2673950195312	1	604.279763	603.272486	0.47078	0.00028448	3.0939	0.0018696	3.5647	0.0021541	604.2806452819191	39.55	0.11292	39.642	39.577	39.69	0.09267					5	3	2	0	0	0	0.46491	1	8355	8355		0.69038	0	1	69606		+	10876	212	6142	6142	14023	14023					-0.045018877874213103
GGHPPGDMWTF	11	Unmodified	_GGHPPGDMWTF_					0	0	0			REV__nc|ENSG00000229214|Q5T6M2|LINC00242	REV__nc|ENSG00000229214|Q5T6M2|LINC00242	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.2586059570312	2	601.258391	1200.50223	0.45729	0.00027495	-0.080905	-4.8645E-05	0.37638	0.0002263	601.2584189016611	66.99	0.5612	67.074	66.852	67.414	0.083832					47	19	3	0	0	0	0.3239	1	16784	16784		17.113	0	1	391480	+		10877	23202	6143	6143	14024	14024					-0.09000261956657596
GGHPPGDMWTF	11	Unmodified	_GGHPPGDMWTF_					0	0	0			REV__nc|ENSG00000229214|Q5T6M2|LINC00242	REV__nc|ENSG00000229214|Q5T6M2|LINC00242	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.2589721679688	2	601.258391	1200.50223	0.18194	0.00010939	0.16998	0.0001022	0.35192	0.00021159	601.2585854546301	67.076	0.61171	67.059	66.839	67.451	-0.016296					42	20	3	0	0	0	0.35522	1	16875	16875		17.113	2.2746	1	397360	+		10878	23202	6143	6143	14025	14025					-0.09000261956657596
GGHPPGDMWTF	11	Unmodified	_GGHPPGDMWTF_					0	0	0			REV__nc|ENSG00000229214|Q5T6M2|LINC00242	REV__nc|ENSG00000229214|Q5T6M2|LINC00242	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.2586059570312	2	601.258391	1200.50223	0.18194	0.00010939	0.16998	0.0001022	0.35192	0.00021159	601.2585854546301	67.076	0.61171	67.059	66.839	67.451	-0.016296					42	20	3	0	0	0	0.31312	1	16821	16821		21.537	2.28	1	397360	+		10879	23202	6143	6143	14026	14026					-0.09000261956657596
GGIGLHTLNA	10	Unmodified	_GGIGLHTLNA_					0	0	0			REV__nc|ENSG00000105662|Q6UUV9-3|CRTC1	REV__nc|ENSG00000105662|Q6UUV9-3|CRTC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7735900878906	2	476.764166	951.513779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.304	1	34.37	33.87	34.87	0.06636								0	0	0	0.34755	1	6750	6750		15.847	0	1		+		10880	14476	6144	6144	14027	14027					0.036083031289877
GGKARERL	8	Unmodified	_GGKARERL_					0	0	0			REV__ENSG00000146250|ENST00000369700|PRSS35	REV__ENSG00000146250|ENST00000369700|PRSS35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.7644348144531	2	443.764501	885.514448	0.26923	0.00011948	-0.093501	-4.1493E-05	0.17573	7.7983E-05	443.76433304385756	69.04	3.7205	69.021	68.458	72.179	-0.019157					315	134	3	0	0	0	0.45307	1	17504	17504		4.756	4.756	1	1263800	+		10881	16338	6145	6145	14028	14028					0.0671114256869032
GGKARERL	8	Unmodified	_GGKARERL_					0	0	0			REV__ENSG00000146250|ENST00000369700|PRSS35	REV__ENSG00000146250|ENST00000369700|PRSS35	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	443.764501	885.514448	0.19845	8.8066E-05	0.08061	3.5772E-05	0.27906	0.00012384	443.76439495983635	69.327	2.4077	69.327	67.97	70.378	0	0.17315	6.0052E-05	NaN	4.756	220	88	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1186000	+		10882	16338	6145	6145							0.0671114256869032
GGKRHRRRQ	9	Unmodified	_GGKRHRRRQ_					0	0	0			REV__nc|ENSG00000177076|Q5QJU3-3|ACER2	REV__nc|ENSG00000177076|Q5QJU3-3|ACER2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8424072265625	2	575.842471	1149.67039	0.23924	0.00013777	0.31408	0.00018086	0.55332	0.00031863	575.8425054517141	80.394	2.8523	80.459	78.561	81.414	0.065094					409	121	4	0	0	0	0.31038	1	21036	21036		7.2892	7.2892	1	5421400	+		10883	23102	6146	6146	14029	14029					0.10154025862675553
GGLFYTIFK	9	Unmodified	_GGLFYTIFK_					0	0	0		ENST00000581467.1_1_18:71816037-71822653:+|nuORF;ENSG00000075336|ENST00000169551|TIMM21	ENST00000581467.1_1_18:71816037-71822653:+|nuORF	ENST00000581467.1_1_18:71816037-71822653:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2584838867188	2	523.289485	1044.56442	0.35744	0.00018704	-0.22803	-0.00011933	0.12941	6.7717E-05	523.2892706984844	69.908	0.50425	69.974	69.769	70.273	0.06604					32	17	2	0	0	0	0.22674	1	17728	17728		22.736	4.6013	1	184200			10884	1043	6147	6147	14030	14030					0.04391832454007272
GGLGPLAHPAL	11	Unmodified	_GGLGPLAHPAL_					0	0	0			REV__ENST00000523351.5_1_5:169188379-169509859:+|nuORF	REV__ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2539978027344	2	501.790184	1001.56581	0.36645	0.00018388	0.47128	0.00023648	0.83773	0.00042036	501.7905897521547	51.975	0.57485	52.026	51.788	52.363	0.050575					47	20	3	0	0	0	0.28146	1	12224	12224		28.487	0	1	493060	+		10885	21928	6148	6148	14031	14031					0.06509466542752307
GGLIPILLPQ	10	Unmodified	_GGLIPILLPQ_					0	0	0			REV__nc|ENSG00000141738|Q14451-4|GRB7	REV__nc|ENSG00000141738|Q14451-4|GRB7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.8453369140625	2	510.826235	1019.63792	0.43031	0.00021981	-0.077247	-3.946E-05	0.35306	0.00018035	510.8261604707689	43.164	0.8181	43.241	43.023	43.841	0.077515					61	29	3	0	0	0	0.3641	1	9503	9503		10.074	1.4806	1	1460000	+		10886	23015	6149	6149	14032	14032					0.12888380896470153
GGLRRELT	8	Unmodified	_GGLRRELT_					0	0	0		ENST00000340096.10_2_X:13753108-13753386:+|nuORF	ENST00000340096.10_2_X:13753108-13753386:+|nuORF	ENST00000340096.10_2_X:13753108-13753386:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7843933105469	2	451.264333	900.514114	-0.16483	-7.4382E-05	-1.8161	-0.00081954	-1.9809	-0.00089392	451.2637440393724	12.294	0.13769	12.294	12.194	12.332	0					6	4	2	0	0	0	0.34414	1	85	85		2.0598	0	1	12652			10887	9514	6150	6150	14033	14033					0.05987722848840349
GGLWRVLLL	9	Unmodified	_GGLWRVLLL_					0	0	0		ENST00000445028.1_1_X:43137608-43138196:-|nuORF	ENST00000445028.1_1_X:43137608-43138196:-|nuORF	ENST00000445028.1_1_X:43137608-43138196:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8375244140625	2	513.826569	1025.63859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.463	1	61.454	60.954	61.954	-0.0094566								0	0	0	0.23091	1	15093	15093		12.532	2.3482	1				10888	10579	6151	6151	14034	14034					0.12679220336190156
GGMSIFLKK	9	Oxidation (M)	_GGM(Oxidation (M))SIFLKK_		GGM(1)SIFLKK		GGM(130)SIFLKK	0	0	1		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7810974121094	2	498.78097	995.547388	0.26598	0.00013266	0.14846	7.4049E-05	0.41444	0.00020671	498.7811076371712	26.433	1.432	26.433	26.009	27.441	0					134	49	4	0	0	0	0.00078391	3	4300	4300;4350;4394		125.53	61.293	1	4362200			10889	9036	6152	6152	14035;14036;14037	14035		923			0.04943588576543334
GGMSIFLKK	9	Oxidation (M)	_GGM(Oxidation (M))SIFLKK_		GGM(1)SIFLKK		GGM(130)SIFLKK	0	0	1		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.78106689453125	2	498.78097	995.547388	0.27452	0.00013693	0.11197	5.5848E-05	0.38649	0.00019277	498.7811062730504	26.436	1.3727	26.397	25.931	27.303	-0.038671					138	48	4	0	0	0	0.00078391	3	4297	4297;4343;4389		125.53	70.756	1	4763600			10890	9036	6152	6152	14038;14039;14040	14038		923			0.04943588576543334
GGMSIFLKK	9	Oxidation (M)	_GGM(Oxidation (M))SIFLKK_		GGM(1)SIFLKK		GGM(110)SIFLKK	0	0	1		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.78125	2	498.78097	995.547388	0.46481	0.00023184	-0.080029	-3.9917E-05	0.38478	0.00019192	498.7810409763036	26.463	1.4053	26.44	25.991	27.396	-0.022236					140	49	4	0	0	0	0.0016712	3	4339	4289;4339;4384		114.2	52.844	1	5067500			10891	9036	6152	6152	14041;14042;14043	14042		923			0.04943588576543334
GGNHCYSPF	9	Unmodified	_GGNHCYSPF_					0	0	0			REV__nc|ENSG00000114646|O95196-3|CSPG5	REV__nc|ENSG00000114646|O95196-3|CSPG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.1978759765625	2	491.197802	980.381051	0.4044	0.00019864	0.53242	0.00026153	0.93683	0.00046017	491.1979284835161	66.711	0.68231	66.711	66.453	67.135	0					69	23	5	0	0	0	0.33508	1	16748	16748		3.5965	1.019	1	856930	+		10892	14840	6153	6153	14044	14044					-0.10992464599303275
GGNHCYSPF	9	Unmodified	_GGNHCYSPF_					0	0	0			REV__nc|ENSG00000114646|O95196-3|CSPG5	REV__nc|ENSG00000114646|O95196-3|CSPG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.19805908203125	2	491.197802	980.381051	0.36903	0.00018127	0.47557	0.0002336	0.8446	0.00041486	491.19794930807683	66.588	0.68838	66.672	66.386	67.074	0.083824					78	24	5	0	0	0	0.31763	1	16694	16694		6.2058	0.44535	1	793710	+		10893	14840	6153	6153	14045	14045					-0.10992464599303275
GGNHCYSPF	9	Unmodified	_GGNHCYSPF_					0	0	0			REV__nc|ENSG00000114646|O95196-3|CSPG5	REV__nc|ENSG00000114646|O95196-3|CSPG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.19805908203125	2	491.197802	980.381051	0.21485	0.00010553	0.652	0.00032026	0.86685	0.0004258	491.19806225756673	66.74	0.60451	66.727	66.433	67.038	-0.013596					72	21	5	0	0	0	0.33276	1	16729	16729		3.9444	3.9444	1	685700	+		10894	14840	6153	6153	14046	14046					-0.10992464599303275
GGNHCYSPF	9	Unmodified	_GGNHCYSPF_					0	0	0			REV__nc|ENSG00000114646|O95196-3|CSPG5	REV__nc|ENSG00000114646|O95196-3|CSPG5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.197802	980.381051	0.21485	0.00010553	0.652	0.00032026	0.86685	0.0004258	491.19806225756673	66.74	0.60451	66.727	66.433	67.038	-0.013596	0.023448	8.307E-05	NaN	3.9444	72	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	685700	+		10895	14840	6153	6153							-0.10992464599303275
GGPFPWAF	8	Unmodified	_GGPFPWAF_					0	0	0		ENST00000360315.7_1_19:19616298-19616775:+|nuORF	ENST00000360315.7_1_19:19616298-19616775:+|nuORF	ENST00000360315.7_1_19:19616298-19616775:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.7131652832031	2	439.713414	877.412274	-0.059153	-2.601E-05	-0.21748	-9.5627E-05	-0.27663	-0.00012164	439.71323069445583	66.914	0.69164	66.9	66.603	67.294	-0.013588					40	24	2	0	0	0	0.45851	1	16791	16791		2.8892	0	1	428880			10896	9675	6154	6154	14047	14047					-0.03133523502913249
GGPIIRSIYI	10	Unmodified	_GGPIIRSIYI_					0	0	0			REV__ENSG00000111052|ENST00000552864|LIN7A	REV__ENSG00000111052|ENST00000552864|LIN7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.33447265625	2	544.826766	1087.63898	0.55183	0.00030065	-0.60794	-0.00033122	-0.056111	-3.0571E-05	544.8262951500965	46.705	0.33319	46.705	46.54	46.873	0					19	11	2	0	0	0	0.28569	1	10508	10508		26.268	4.5215	1	381690	+		10897	14700	6155	6155	14048	14048					0.09866595265361866
GGPSLANVNI	10	Unmodified	_GGPSLANVNI_					0	0	0		ENSG00000152078|ENST00000370203|TLCD4	ENSG00000152078|ENST00000370203|TLCD4	ENSG00000152078|ENST00000370203|TLCD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2414245605469	2	471.256174	940.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.798	1	29.81	29.31	30.31	0.012266								0	0	0	0.34454	1	5376	5376		17.113	7.7298	1				10898	4998	6156	6156	14049	14049					0.025165968920987325
GGQALLLVV	9	Unmodified	_GGQALLLVV_					0	0	0			REV__ENSG00000183307|ENST00000331437|TMEM121B	REV__ENSG00000183307|ENST00000331437|TMEM121B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.28863525390625	2	435.276378	868.538203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.287	1	92.287	91.787	92.787	0								0	0	0	0.24077	1	24539	24539		9.3474	2.9933	1		+		10899	18252	6157	6157	14050	14050					0.09867563282523406
GGQKPLLNCGC	11	Unmodified	_GGQKPLLNCGC_					0	0	0		ENST00000305557.9_1_2:74653101-74653329:-|nuORF	ENST00000305557.9_1_2:74653101-74653329:-|nuORF	ENST00000305557.9_1_2:74653101-74653329:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3118286132812	2	545.262619	1088.51068	0.2521	0.00013746	0.20263	0.00011049	0.45472	0.00024794	545.2625671634108	15.781	0.26785	15.781	15.624	15.892	0					14	9	2	0	0	0	0.33255	1	1096	1096		1.1933	0.59184	1	22913			10900	9265	6158	6158	14051	14051					-0.030030313116867546
GGQLKKVLME	10	Unmodified	_GGQLKKVLME_					0	0	0			REV__nc|ENSG00000174996|Q9H0B6-2|KLC2	REV__nc|ENSG00000174996|Q9H0B6-2|KLC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8057861328125	2	551.818084	1101.62162	0.37751	0.00020832	-2.3968	-0.0013226	-2.0193	-0.0011143	552.3183824609122	64.86	0.26125	64.86	64.699	64.96	0					13	9	2	0	0	0	0.35231	1	16132	16132		12.241	0.60036	1	140760	+		10901	17867	6159	6159	14052	14052					0.07486931668063335
GGQLKKVLME	10	Unmodified	_GGQLKKVLME_					0	0	0			REV__nc|ENSG00000174996|Q9H0B6-2|KLC2	REV__nc|ENSG00000174996|Q9H0B6-2|KLC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.80615234375	2	551.818084	1101.62162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.759	1	64.852	64.352	65.352	0.09288								0	0	0	0.35611	1	16108	16108		12.241	2.1667	1		+		10902	17867	6159	6159	14053	14053					0.07486931668063335
GGQRRRWRRAV	11	Unmodified	_GGQRRRWRRAV_					0	0	0		ENST00000367330.5_1_1:201123337-201123409:-|nuORF	ENST00000367330.5_1_1:201123337-201123409:-|nuORF	ENST00000367330.5_1_1:201123337-201123409:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.26287841796875	3	466.608098	1396.80247	0.14869	6.9379E-05	-0.34132	-0.00015926	-0.19263	-8.9884E-05	466.6078032658267	118.97	0.13647	119	118.91	119.04	0.026253					24	15	2	0	0	0	0.33351	1	30792	30792		0.094841	0	1	15506			10903	9734	6160	6160	14054	14054					0.11993630879624106
GGQRRRWRRAV	11	Unmodified	_GGQRRRWRRAV_					0	0	0		ENST00000367330.5_1_1:201123337-201123409:-|nuORF	ENST00000367330.5_1_1:201123337-201123409:-|nuORF	ENST00000367330.5_1_1:201123337-201123409:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	466.608098	1396.80247	-0.39632	-0.00018493	0.020648	9.6347E-06	-0.37567	-0.00017529	466.6080076295786	118.82	0.21254	118.82	118.76	118.97	0	-0.11704	0.00030231	NaN	0.094841	31	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28725			10904	9734	6160	6160							0.11993630879624106
GGQRRRWRRAV	11	Unmodified	_GGQRRRWRRAV_					0	0	0		ENST00000367330.5_1_1:201123337-201123409:-|nuORF	ENST00000367330.5_1_1:201123337-201123409:-|nuORF	ENST00000367330.5_1_1:201123337-201123409:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	466.608098	1396.80247	-0.17613	-8.2182E-05	-0.26538	-0.00012383	-0.44151	-0.00020601	466.6079488037632	119.02	0.118	119	118.95	119.06	-0.024147	0.059713	-9.8079E-05	NaN	0.094841	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19093			10905	9734	6160	6160							0.11993630879624106
GGVIFTIY	8	Unmodified	_GGVIFTIY_					0	0	0		nc|ENSG00000099998|P36269-3|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-2|GGT5;ENSG00000170961|ENST00000303924|HAS2	nc|ENSG00000099998|P36269-3|GGT5;ENSG00000170961|ENST00000303924|HAS2	nc|ENSG00000099998|P36269-3|GGT5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.2510986328125	2	435.242004	868.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.152	1	70.152	69.652	70.652	0								0	0	0	0.36169	1	17765	17765		9.3474	3.587	1				10906	1513;6501	6161	6161	14055	14055					0.029958989828060112
GGVIFTIY	8	Unmodified	_GGVIFTIY_					0	0	0		nc|ENSG00000099998|P36269-3|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-2|GGT5;ENSG00000170961|ENST00000303924|HAS2	nc|ENSG00000099998|P36269-3|GGT5;ENSG00000170961|ENST00000303924|HAS2	nc|ENSG00000099998|P36269-3|GGT5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2509460449219	2	435.242004	868.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.676	1	68.657	68.157	69.157	-0.019157								0	0	0	0.36961	1	17302	17302		5.7604	0.52976	1				10907	1513;6501	6161	6161	14056	14056					0.029958989828060112
GGVPRKGVPF	10	Unmodified	_GGVPRKGVPF_					0	0	0		nc|ENSG00000161618|Q8IZ83-2|ALDH16A1;ENST00000599652.5_1_19:49956588-49965222:+|nuORF	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.30975341796875	2	507.298176	1012.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.507	1	92.597	92.097	93.097	0.089195								0	0	0	0.36787	1	24602	24602		7.2892	2.0586	1				10908	12242	6162	6162	14057	14057					0.07601172779664012
GGVPRKGVPF	10	Unmodified	_GGVPRKGVPF_					0	0	0		nc|ENSG00000161618|Q8IZ83-2|ALDH16A1;ENST00000599652.5_1_19:49956588-49965222:+|nuORF	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.3095397949219	2	507.298176	1012.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.02	1	93.109	92.609	93.609	0.089195								0	0	0	0.36787	1	24759	24759		7.2892	0.93513	1				10909	12242	6162	6162	14058	14058					0.07601172779664012
GGVPRKGVPF	10	Unmodified	_GGVPRKGVPF_					0	0	0		nc|ENSG00000161618|Q8IZ83-2|ALDH16A1;ENST00000599652.5_1_19:49956588-49965222:+|nuORF	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.30963134765625	2	507.298176	1012.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.142	1	93.231	92.731	93.731	0.089195								0	0	0	0.36787	1	24794	24794		7.2892	2.0586	1				10910	12242	6162	6162	14059	14059					0.07601172779664012
GGVPRKGVPF	10	Unmodified	_GGVPRKGVPF_					0	0	0		nc|ENSG00000161618|Q8IZ83-2|ALDH16A1;ENST00000599652.5_1_19:49956588-49965222:+|nuORF	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.30950927734375	2	507.298176	1012.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.343	1	92.344	91.844	92.844	0.00046539								0	0	0	0.35754	1	24551	24551		11.64	0.81637	1				10911	12242	6162	6162	14060	14060					0.07601172779664012
GGVPRKGVPF	10	Unmodified	_GGVPRKGVPF_					0	0	0		nc|ENSG00000161618|Q8IZ83-2|ALDH16A1;ENST00000599652.5_1_19:49956588-49965222:+|nuORF	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.3094787597656	2	507.298176	1012.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.472	1	92.473	91.973	92.973	0.00046539								0	0	0	0.36787	1	24591	24591		7.2892	2.0586	1				10912	12242	6162	6162	14061	14061					0.07601172779664012
GGVPRKGVPF	10	Unmodified	_GGVPRKGVPF_					0	0	0		nc|ENSG00000161618|Q8IZ83-2|ALDH16A1;ENST00000599652.5_1_19:49956588-49965222:+|nuORF	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	nc|ENSG00000161618|Q8IZ83-2|ALDH16A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.30987548828125	2	507.298176	1012.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.682	1	94.68	94.18	95.18	-0.0020142								0	0	0	0.36787	1	25266	25266		7.2892	2.0586	1				10913	12242	6162	6162	14062	14062					0.07601172779664012
GGYIGGLVPK	10	Unmodified	_GGYIGGLVPK_					0	0	0		nc|ENSG00000135241|Q9NP80-3|PNPLA8;nc|ENSG00000135241|Q9NP80-2|PNPLA8;ENSG00000135241|ENST00000257694|PNPLA8	nc|ENSG00000135241|Q9NP80-3|PNPLA8	nc|ENSG00000135241|Q9NP80-3|PNPLA8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2276611328125	2	480.779285	959.544017	-0.010008	-4.8114E-06	0.10631	5.1113E-05	0.096305	4.6301E-05	480.77915036681225	46.135	0.46236	46.194	45.871	46.333	0.059834					25	16	2	0	0	0	0.19457	1	10374	10374		49.933	27.197	1	418270			10914	3854	6163	6163	14063	14063					0.06262661794187352
GGYIGGLVPK	10	Unmodified	_GGYIGGLVPK_					0	0	0		nc|ENSG00000135241|Q9NP80-3|PNPLA8;nc|ENSG00000135241|Q9NP80-2|PNPLA8;ENSG00000135241|ENST00000257694|PNPLA8	nc|ENSG00000135241|Q9NP80-3|PNPLA8	nc|ENSG00000135241|Q9NP80-3|PNPLA8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.227294921875	2	480.779285	959.544017	0.27907	0.00013417	-0.47726	-0.00022946	-0.19818	-9.5282E-05	480.77892764019236	46.156	0.4726	46.221	45.951	46.424	0.065048					28	16	2	0	0	0	0.15562	1	10371	10371		58.679	40.532	1	389030			10915	3854	6163	6163	14064	14064					0.06262661794187352
GGYSISFLK	9	Unmodified	_GGYSISFLK_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.800048828125	2	486.263468	970.512382	0.57597	0.00028007	-0.28342	-0.00013782	0.29255	0.00014226	486.2632117912617	54.643	0.30532	54.627	54.49	54.796	-0.015923					15	10	2	0	0	0	0.22143	1	12993	12993		24.991	14.917	1	244290			10916	4168	6164	6164	14065	14065					0.025946690402292916
GHAEVVSL	8	Unmodified	_GHAEVVSL_					0	0	0		ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS	ENSG00000173273|ENST00000310430|TNKS	ENSG00000173273|ENST00000310430|TNKS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.2108154296875	2	406.21906	810.423567	-0.0084182	-3.4196E-06	-0.15304	-6.2169E-05	-0.16146	-6.5589E-05	406.21871097124165	30.317	0.66295	30.317	30.064	30.727	0					39	23	3	0	0	0	0.42758	1	5545	5545		13.508	3.3245	1	148210			10917	6712	6165	6165	14066	14066					0.010772538005767274
GHALIRMK	8	Unmodified	_GHALIRMK_					0	0	0			REV__ENST00000497878.5_1_19:2988043-2994999:+|nuORF	REV__ENST00000497878.5_1_19:2988043-2994999:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.2835998535156	2	463.273647	924.532741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.315	1	90.315	89.815	90.815	0								0	0	0	0.37664	1	23936	23936		2.5775	0	1		+		10918	14431	6166	6166	14067	14067					0.06745561219054252
GHDIPAGIC	9	Unmodified	_GHDIPAGIC_					0	0	0			REV__STAT2|p.R248G|1|0.22|ENSG00000170581|chr12:56354506-56354506|T/C|missense_variant	REV__STAT2|p.R248G|1|0.22|ENSG00000170581|chr12:56354506-56354506|T/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.21112060546875	2	441.710545	881.406537	0.34631	0.00015297	2.5994	0.0011482	2.9457	0.0013012	441.71066713322756	84.405	0.33972	84.482	84.274	84.614	0.077095					20	13	2	0	0	0	0.25879	1	22152	22152		2.0598	0	1	50539	+		10919	23312	6167	6167	14068	14068					-0.03890990076877188
GHDIPAGIC	9	Unmodified	_GHDIPAGIC_					0	0	0			REV__STAT2|p.R248G|1|0.22|ENSG00000170581|chr12:56354506-56354506|T/C|missense_variant	REV__STAT2|p.R248G|1|0.22|ENSG00000170581|chr12:56354506-56354506|T/C|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	441.710545	881.406537	0.40098	0.00017712	2.7675	0.0012224	3.1685	0.0013996	441.71061905306766	84.523	0.38223	84.51	84.356	84.738	-0.01284	0.0141	8.3236E-05	NaN	2.0598	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60361	+		10920	23312	6167	6167							-0.03890990076877188
GHGKYHVRL	9	Unmodified	_GHGKYHVRL_					0	0	0			REV__ENSG00000010017|ENST00000011619|RANBP9	REV__ENSG00000010017|ENST00000011619|RANBP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7994384765625	2	533.798875	1065.5832	0.31885	0.0001702	0.33028	0.0001763	0.64913	0.0003465	533.7990076849828	49.118	0.95004	49.163	48.851	49.801	0.044891					96	34	4	0	0	0	0.20651	1	11345	11345		26.884	26.884	1	4113900	+		10921	13411	6168	6168	14069	14069					0.05302806868417065
GHGKYHVRL	9	Unmodified	_GHGKYHVRL_					0	0	0			REV__ENSG00000010017|ENST00000011619|RANBP9	REV__ENSG00000010017|ENST00000011619|RANBP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.799072265625	2	533.798875	1065.5832	0.31225	0.00016668	0.32159	0.00017166	0.63383	0.00033834	533.7989784078756	49.019	1.0136	49.051	48.774	49.787	0.032047					100	36	4	0	0	0	0.12846	2	11265	11265;11310		34.102	34.102	1	4568500	+		10922	13411	6168	6168	14070;14071	14070					0.05302806868417065
GHGPSLDLSF	10	Unmodified	_GHGPSLDLSF_					0	0	0		ENST00000373083.8_1_6:41318475-41318565:+|nuORF	ENST00000373083.8_1_6:41318475-41318565:+|nuORF	ENST00000373083.8_1_6:41318475-41318565:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2390747070312	2	515.253631	1028.49271	0.22906	0.00011802	-1.0565	-0.00054437	-0.82744	-0.00042634	515.2529811917129	55.376	0.48474	55.376	55.198	55.682	0					27	17	2	0	0	0	0.33268	1	13195	13195		15.847	0	1	508550			10923	9857	6169	6169	14072	14072					-0.020397069705268223
GHGWVNGL	8	Unmodified	_GHGWVNGL_					0	0	0		ENST00000437322.2_1_X:49642981-49643347:-|nuORF	ENST00000437322.2_1_X:49642981-49643347:-|nuORF	ENST00000437322.2_1_X:49642981-49643347:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.2130126953125	2	420.211569	838.408586	0.38696	0.0001626	3.9515	0.0016605	4.3385	0.0018231	420.2128293148658	77.478	0.66672	77.534	77.258	77.924	0.055412					51	23	3	0	0	0	0.4397	1	19984	19984		9.3474	0	1	447630			10924	10531	6170	6170	14073	14073					-0.01708193276772363
GHIHLVSLKR	10	Unmodified	_GHIHLVSLKR_					0	0	0			REV__ENSG00000197798|ENST00000533050|FAM118B	REV__ENSG00000197798|ENST00000533050|FAM118B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.820556640625	2	580.356557	1158.69856	0.69916	0.00040576	1.9429	0.0011276	2.6421	0.0015334	580.3576979721274	50.805	0.38297	50.805	50.595	50.978	0					21	13	2	0	0	0	0.31358	1	11832	11832		13.906	3.0821	1	131850	+		10925	18767	6171	6171	14074	14074					0.12555910999412845
GHIHLVSLKR	10	Unmodified	_GHIHLVSLKR_					0	0	0			REV__ENSG00000197798|ENST00000533050|FAM118B	REV__ENSG00000197798|ENST00000533050|FAM118B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	580.356557	1158.69856	0.71032	0.00041224	1.691	0.00098141	2.4014	0.0013937	580.3573425155928	50.83	0.39455	50.84	50.621	51.016	0.0095673	0.017042	-0.00013092	NaN	13.906	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153810	+		10926	18767	6171	6171							0.12555910999412845
GHISSEKHKE	10	Unmodified	_GHISSEKHKE_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;nc|ENSG00000122299|Q8IWR0-2|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2936401367188	2	576.293819	1150.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.58	1	111.59	111.09	112.09	0.01152								0	0	0	0.37044	1	29051	29051		6.2058	2.2614	1				10927	3037	6172	6172	14075	14075					0.003821543525191373
GHLEHHWMSKY	11	Unmodified	_GHLEHHWMSKY_					0	0	0			REV__ENST00000369498.7_1_X:154283071-154283149:+|nuORF	REV__ENST00000369498.7_1_X:154283071-154283149:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.2116394042969	3	475.555789	1423.64554	-0.1543	-7.3377E-05	0.8659	0.00041178	0.7116	0.00033841	475.89061309860585	13.286	0.14195	13.219	13.134	13.275	-0.067495					6	4	2	0	0	0	0.33334	1	384	384		1.2148	0.20126	1	10774	+		10928	20357	6173	6173	14076	14076					-0.049338348455648884
GHLWFVLF	8	Unmodified	_GHLWFVLF_					0	0	0		nc|ENSG00000253649|A0A1B0GVH4|PRSS51	nc|ENSG00000253649|A0A1B0GVH4|PRSS51	nc|ENSG00000253649|A0A1B0GVH4|PRSS51	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.77691650390625	2	509.779088	1017.54362	0.38414	0.00019583	-1.9842	-0.0010115	-1.6	-0.00081566	509.77636084527217	90.089	0.63989	90.089	89.746	90.386	0					79	53	2	0	0	0	0.41716	1	23862	23862		17.087	0	1	170960			10929	12978	6174	6174	14077	14077					0.035552868649801894
GHPPVLRQSI	10	Unmodified	_GHPPVLRQSI_					0	0	0		ENSG00000128016|ENST00000597629|ZFP36	ENSG00000128016|ENST00000597629|ZFP36	ENSG00000128016|ENST00000597629|ZFP36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.8115234375	2	552.31964	1102.62473	0.6886	0.00038033	-0.15439	-8.5275E-05	0.5342	0.00029505	552.3195889878727	36.8	0.53432	36.893	36.713	37.248	0.093018					43	19	3	0	0	0	0.36002	1	7585	7585		10.824	0	1	341100			10930	3348	6175	6175	14078	14078					0.07751942837080605
GHQIRSLEQM	10	Unmodified	_GHQIRSLEQM_					0	0	0			REV__nc|ENSG00000214694|A8MVX0|ARHGEF33	REV__nc|ENSG00000214694|A8MVX0|ARHGEF33	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	400.20306396484375	3	400.204757	1197.59244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.096	1	91.096	90.596	91.596	0								0	0	0	0.37319	1	24176	24176		5.0475	3.4552	1		+		10931	19063	6176	6176	14079	14079					0.0015478737177545554
GHRHALHF	8	Unmodified	_GHRHALHF_					0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7695617675781	2	487.75701	973.499467	0.093759	4.5732E-05	1.2646	0.00061682	1.3584	0.00066255	487.7578827568469	23.148	0.63935	23.061	22.909	23.548	-0.087608					49	22	3	0	0	0	0.42758	1	3408	3408		13.508	0.97634	1	652590	+		10932	14568	6177	6177	14080	14080					0.011656954913746631
GHRQGQLL	8	Unmodified	_GHRQGQLL_					0	0	0			REV__nc|ENSG00000167193|P46108-2|CRK	REV__nc|ENSG00000167193|P46108-2|CRK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2840270996094	2	454.756675	907.498798	0.24217	0.00011013	-0.0075804	-3.4473E-06	0.23459	0.00010668	454.7566379181475	89.326	0.5597	89.326	89.131	89.69	0					52	30	3	0	0	0	0.3366	1	23616	23616		12.532	12.532	1	390640	+		10933	17370	6178	6178	14081	14081					0.041348560516553334
GHRQGQLL	8	Unmodified	_GHRQGQLL_					0	0	0			REV__nc|ENSG00000167193|P46108-2|CRK	REV__nc|ENSG00000167193|P46108-2|CRK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2839660644531	2	454.756675	907.498798	0.24924	0.00011334	0.020143	9.1602E-06	0.26938	0.0001225	454.7566498082905	89.315	0.59708	89.314	89.051	89.648	-0.00080872					63	33	3	0	0	0	0.3366	1	23628	23628		7.9102	7.9102	1	259930	+		10934	17370	6178	6178	14082	14082					0.041348560516553334
GHRQGQLL	8	Unmodified	_GHRQGQLL_					0	0	0			REV__nc|ENSG00000167193|P46108-2|CRK	REV__nc|ENSG00000167193|P46108-2|CRK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	454.756675	907.498798	0.24923	0.00011334	-0.088495	-4.0244E-05	0.16074	7.3097E-05	454.7566515625575	89.168	0.68173	89.259	89.023	89.704	0.090569	-0.040701	-3.8605E-05	NaN	12.532	67	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342850	+		10935	17370	6178	6178							0.041348560516553334
GHSEKSTI	8	Unmodified	_GHSEKSTI_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.2508544921875	2	429.719424	857.424296	0.42944	0.00018454	0.1853	7.9626E-05	0.61474	0.00026416	429.7199674873637	50.774	0.10573	50.783	50.701	50.807	0.0095634					5	3	2	0	0	0	0.34218	1	11786	11786		5.2307	0.47466	1	23341			10936	8279	6179	6179	14083	14083					-0.010119515503674847
GHTLWVRF	8	Unmodified	_GHTLWVRF_					0	0	0		CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant;CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant;CUBN|p.K3401Rfs*11|1|0.02|ENSG00000107611|chr10:16835174-16835175|-/TTTTGAATGATTCC|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN	CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant	CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3009338378906	2	508.277244	1014.53993	0.59808	0.00030399	-0.97306	-0.00049458	-0.37498	-0.00019059	508.27667806432316	46.82	0.40904	46.82	46.675	47.084	0					15	13	2	0	0	0	0.34046	1	10654	10654		9.3474	0	1	381030			10937	249	6180	6180	14084	14084					0.033246170911411355
GHTWRFFV	8	Unmodified	_GHTWRFFV_					0	0	0		ENST00000216039.9_1_22:39083023-39083575:-|nuORF	ENST00000216039.9_1_22:39083023-39083575:-|nuORF	ENST00000216039.9_1_22:39083023-39083575:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2693481445312	2	525.269419	1048.52428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.59	1	115.57	115.07	116.07	-0.020988								0	0	0	0.37992	1	29972	29972		0.79363	0	1				10938	8809	6181	6181	14085	14085					0.001963305740900978
GHVNHPCTVE	10	Unmodified	_GHVNHPCTVE_					0	0	0		ENST00000526169.1_1_11:67376170-67379399:+|nuORF;ENST00000526770.5_1_11:67378371-67379926:+|nuORF;nc|ENSG00000167792|P49821-2|NDUFV1;ENSG00000167792|ENST00000322776|NDUFV1	ENST00000526169.1_1_11:67376170-67379399:+|nuORF	ENST00000526169.1_1_11:67376170-67379399:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.795654296875	2	546.74819	1091.48183	0.28562	0.00015616	0.89768	0.0004908	1.1833	0.00064696	546.7484883308541	39.896	0.46613	39.896	39.695	40.161	0					20	16	2	0	0	0	0.318	1	8496	8496		7.2892	0.56607	1	103300			10939	6211	6182	6182	14086	14086					-0.06025432616456783
GHYVVAQV	8	Unmodified	_GHYVVAQV_					0	0	0			REV__ENSG00000105707|ENST00000672452|HPN	REV__ENSG00000105707|ENST00000672452|HPN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.271484375	2	436.734877	871.455202	0.059999	2.6204E-05	-0.069872	-3.0515E-05	-0.0098722	-4.3115E-06	436.7347704478854	44.02	0.4417	44.098	43.865	44.307	0.077515					26	16	2	0	0	0	0.34092	1	9665	9665		13.508	4.1604	1	238570	+		10940	14482	6183	6183	14087	14087					0.01433246554518064
GIADFVLKY	9	Unmodified	_GIADFVLKY_					0	0	0		nc|ENSG00000135119|Q96EX2-4|RNFT2;nc|ENSG00000135119|Q96EX2-3|RNFT2;ENST00000547718.5_1_12:117186478-117290514:+|nuORF;nc|ENSG00000135119|Q96EX2-5|RNFT2;ENSG00000135119|ENST00000257575|RNFT2	nc|ENSG00000135119|Q96EX2-4|RNFT2	nc|ENSG00000135119|Q96EX2-4|RNFT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7048950195312	2	513.286943	1024.55933	0.19745	0.00010135	-0.41445	-0.00021273	-0.217	-0.00011138	513.2866014871495	70.017	0.3634	70.083	69.91	70.273	0.06604					16	12	2	0	0	0	0.24289	1	17718	17718		18.146	3.3081	1	80680			10941	3847	6184	6184	14088	14088					0.04803528591378381
GIAFILRR	8	Unmodified	_GIAFILRR_					0	0	0			REV__nc|ENSG00000110042|Q9Y2E6-2|DTX4	REV__nc|ENSG00000110042|Q9Y2E6-2|DTX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7295227050781	2	473.303262	944.59197	0.38438	0.00018193	-0.046278	-2.1904E-05	0.33811	0.00016003	473.3030720985167	51.157	0.54253	51.167	50.937	51.48	0.0095673					47	20	3	0	0	0	0.21281	1	11900	11900		56.541	9.6204	1	567170	+		10942	14659	6185	6185	14089	14089					0.11745780504884351
GIALTPKGQL	10	Unmodified	_GIALTPKGQL_					0	0	0		ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.3056335449219	2	499.305667	996.596781	-0.0039826	-1.9885E-06	0.23733	0.0001185	0.23335	0.00011651	499.30572254485025	39.039	0.61205	39.039	38.79	39.402	0					40	21	2	0	0	0	0.33817	1	8225	8225		14.838	0	1	1210100			10943	2874	6186	6186	14090	14090					0.09834619856997051
GIANITALK	9	Unmodified	_GIANITALK_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.W2169Cfs*90|1|0.11|ENSG00000197694|chr9:128626632-128626632|G/-|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.888671875	2	450.779285	899.544017	0.30247	0.00013635	-0.46383	-0.00020908	-0.16136	-7.2738E-05	450.77892706095247	43.47	0.49711	43.548	43.319	43.816	0.077515					20	17	2	0	0	0	0.11018	1	9555	9555		45.74	11.338	1	174260			10944	7989	6187	6187	14091	14091					0.09022661794176656
GIANITALK	9	Unmodified	_GIANITALK_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.W2169Cfs*90|1|0.11|ENSG00000197694|chr9:128626632-128626632|G/-|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.88861083984375	2	450.779285	899.544017	0.29325	0.00013219	-0.29951	-0.00013501	-0.0062604	-2.822E-06	450.7791185397197	43.452	0.57311	43.536	43.268	43.841	0.083996					24	20	2	0	0	0	0.1558	1	9548	9548		41.956	12.874	1	185340			10945	7989	6187	6187	14092	14092					0.09022661794176656
GIANLVEWI	9	Unmodified	_GIANLVEWI_					0	0	0			REV__ENSG00000165509|ENST00000298296|MAGEC3	REV__ENSG00000165509|ENST00000298296|MAGEC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.801025390625	2	507.784567	1013.55458	0.45001	0.00022851	2.5454	0.0012925	2.9954	0.001521	507.78638096960407	36.715	0.33972	36.715	36.447	36.787	0					16	11	2	0	0	0	0.079066	1	7503	7503		42.095	20.348	1	56994	+		10946	17241	6188	6188	14093	14093					0.04834644448601466
GIANLVEWI	9	Unmodified	_GIANLVEWI_					0	0	0			REV__ENSG00000165509|ENST00000298296|MAGEC3	REV__ENSG00000165509|ENST00000298296|MAGEC3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.784567	1013.55458	0.45001	0.00022851	2.5454	0.0012925	2.9954	0.001521	507.78638096960407	36.715	0.33972	36.715	36.447	36.787	0	0.026649	1.3934E-05	NaN	42.095	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56994	+		10947	17241	6188	6188							0.04834644448601466
GIANLVEWI	9	Unmodified	_GIANLVEWI_					0	0	0			REV__ENSG00000165509|ENST00000298296|MAGEC3	REV__ENSG00000165509|ENST00000298296|MAGEC3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.784567	1013.55458	0.7441	0.00037784	2.521	0.0012801	3.2651	0.001658	508.2871593475956	36.569	0.30625	36.662	36.458	36.764	0.093014	-0.026649	-1.0844E-05	NaN	42.095	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179930	+		10948	17241	6188	6188							0.04834644448601466
GIASLAHELE	10	Unmodified	_GIASLAHELE_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3005981445312	2	520.274564	1038.53457	0.47914	0.00024929	-2.6332	-0.00137	-2.1541	-0.0011207	520.2733605508456	62.406	1.3331	62.406	61.784	63.117	0					85	49	3	0	0	0	0.28434	1	15501	15501		25.399	4.5281	1	2232500	+		10949	15470	6189	6189	14094	14094					0.016848487179913718
GIASSSIAAK	10	Unmodified	_GIASSSIAAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.7585754394531	2	452.758549	903.502546	0.042717	1.9341E-05	-0.098572	-4.4629E-05	-0.055855	-2.5289E-05	452.7584599128612	23.913	0.49132	23.913	23.643	24.134	0					29	16	2	0	0	0	0.011792	2	3564	3564;3614		80.676	40.726	1	454920			10950	6014	6190	6190	14095;14096	14095					0.046934810348602696
GIASSSIAAK	10	Unmodified	_GIASSSIAAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.7584228515625	2	452.758549	903.502546	0.13252	5.9998E-05	-0.16	-7.2443E-05	-0.027489	-1.2446E-05	452.7583549304464	24.028	0.64399	23.956	23.563	24.207	-0.072559					43	21	3	0	0	0	0.020018	2	3647	3604;3647		71.708	31.758	1	423540			10951	6014	6190	6190	14097;14098	14098					0.046934810348602696
GIASSSIAAK	10	Unmodified	_GIASSSIAAK_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7584228515625	2	452.758549	903.502546	0.22571	0.00010219	-0.26279	-0.00011898	-0.037081	-1.6789E-05	452.7583450813994	24.02	0.66201	23.981	23.534	24.196	-0.038927					45	22	3	0	0	0	0.0092666	2	3640	3593;3640		83.429	43.479	1	447990			10952	6014	6190	6190	14099;14100	14100					0.046934810348602696
GIDRGAGCK	9	Unmodified	_GIDRGAGCK_					0	0	0			REV__ENSG00000136011|ENST00000388887|STAB2	REV__ENSG00000136011|ENST00000388887|STAB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2300720214844	2	438.721444	875.428335	0.11086	4.8639E-05	-3.7981	-0.0016663	-3.6873	-0.0016177	438.71964274624935	21.834	0.17477	21.734	21.657	21.832	-0.10034					8	5	2	0	0	0	0.24688	1	2984	2984		14.838	1.3304	1	26765	+		10953	15779	6191	6191	14101	14101					-0.014361853283162418
GIEELEIR	8	Unmodified	_GIEELEIR_					0	0	0			REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF	REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7501220703125	2	479.763832	957.513111	0.073478	3.5252E-05	-0.049749	-2.3868E-05	0.023729	1.1384E-05	479.7638633285773	18.997	1.5407	18.879	18.556	20.096	-0.11739					160	53	5	0	0	0	0.4419	1	2253	2253		8.5933	0	1	3487500	+		10954	20889	6192	6192	14102	14102					0.03265463689274384
GIFAPLSKISK	11	Unmodified	_GIFAPLSKISK_					0	0	0		nc|ENSG00000115295|Q8N3C7-4|CLIP4;nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4	nc|ENSG00000115295|Q8N3C7-4|CLIP4	nc|ENSG00000115295|Q8N3C7-4|CLIP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.290283203125	2	580.855524	1159.69649	0.45183	0.00026245	-0.09229	-5.3607E-05	0.35954	0.00020884	580.8554249528084	48.544	0.29693	48.576	48.387	48.684	0.032043					15	10	2	0	0	0	0.33218	1	11131	11131		4.1895	0.90819	1	141050			10955	12661	6193	6193	14103	14103					0.12303437470927747
GIFETRFQ	8	Unmodified	_GIFETRFQ_					0	0	0		nc|ENSG00000141404|P38405|GNAL;ENSG00000141404|ENST00000334049|GNAL	nc|ENSG00000141404|P38405|GNAL	nc|ENSG00000141404|P38405|GNAL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2731018066406	2	499.258717	996.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.082	1	42.167	41.667	42.667	0.085197								0	0	0	0.33122	1	9129	9129		23.148	2.6948	1				10956	4375	6194	6194	14104	14104					0.004489007547249457
GIFETRFQ	8	Unmodified	_GIFETRFQ_					0	0	0		nc|ENSG00000141404|P38405|GNAL;ENSG00000141404|ENST00000334049|GNAL	nc|ENSG00000141404|P38405|GNAL	nc|ENSG00000141404|P38405|GNAL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2732238769531	2	499.258717	996.50288	0.57957	0.00028935	-3.6484	-0.0018215	-3.0688	-0.0015321	499.75665266308846	41.842	0.34151	41.938	41.841	42.183	0.096622					23	11	3	0	0	0	0.3671	1	9093	9093		23.148	5.0021	1	573870			10957	4375	6194	6194	14105	14105					0.004489007547249457
GIFGTLALGPK	11	Unmodified	_GIFGTLALGPK_					0	0	0			REV__ENST00000561916.2_1_16:31213940-31214408:+|nuORF	REV__ENST00000561916.2_1_16:31213940-31214408:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2930297851562	2	537.321317	1072.62808	0.55819	0.00029993	-0.47807	-0.00025688	0.080123	4.3052E-05	537.8224521480544	68.315	0.35635	68.295	68.014	68.37	-0.01915					17	12	2	0	0	0	0.32293	1	17136	17136		13.042	0.80181	1	119370	+		10958	22313	6195	6195	14106	14106					0.09467192891065679
GIFRQLPESSL	11	Unmodified	_GIFRQLPESSL_					0	0	0		nc|ENSG00000245848|P49715-3|CEBPA;nc|ENSG00000245848|P49715-2|CEBPA;ENSG00000245848|ENST00000498907|CEBPA;nc|ENSG00000245848|P49715-4|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.23211669921875	3	416.231189	1245.67174	0.019758	8.2237E-06	0.21794	9.0715E-05	0.2377	9.8938E-05	416.2321037285058	16.109	1.1405	15.995	15.307	16.448	-0.11434					96	38	4	0	0	0	0.42506	1	1263	1263		7.9454	0.46833	1	251020			10959	8576	6196	6196	14107	14107					0.0587275759755812
GIFSAEFLK	9	Unmodified	_GIFSAEFLK_					0	0	0		ENSG00000176171|ENST00000368636|BNIP3;ENST00000550043.1_1_14:28734103-28734340:+|nuORF;nc|ENSG00000104765|O60238-2|BNIP3L;ENSG00000104765|ENST00000380629|BNIP3L	ENSG00000176171|ENST00000368636|BNIP3;nc|ENSG00000104765|O60238-2|BNIP3L	ENSG00000176171|ENST00000368636|BNIP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2801208496094	2	506.279118	1010.54368	0.33311	0.00016865	1.4689	0.0007437	1.8021	0.00091234	506.2805229299493	62.957	1.6029	62.957	62.476	64.079	0					126	58	4	0	0	0	0.0013683	1	15559	15559		118.07	56.711	1	9251100			10960	6905;1914	6197	6197	14108	14108					0.03883242074323334
GIFSAEFLK	9	Unmodified	_GIFSAEFLK_					0	0	0		ENSG00000176171|ENST00000368636|BNIP3;ENST00000550043.1_1_14:28734103-28734340:+|nuORF;nc|ENSG00000104765|O60238-2|BNIP3L;ENSG00000104765|ENST00000380629|BNIP3L	ENSG00000176171|ENST00000368636|BNIP3;nc|ENSG00000104765|O60238-2|BNIP3L	ENSG00000176171|ENST00000368636|BNIP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2799377441406	2	506.279118	1010.54368	0.36162	0.00018308	1.1986	0.0006068	1.5602	0.00078988	506.28035189040395	62.797	1.4692	62.892	62.52	63.989	0.095722					120	52	4	0	0	0	0.0013683	1	15516	15516		118.07	56.711	1	9824000			10961	6905;1914	6197	6197	14109	14109					0.03883242074323334
GIFSAEFLK	9	Unmodified	_GIFSAEFLK_					0	0	0		ENSG00000176171|ENST00000368636|BNIP3;ENST00000550043.1_1_14:28734103-28734340:+|nuORF;nc|ENSG00000104765|O60238-2|BNIP3L;ENSG00000104765|ENST00000380629|BNIP3L	ENSG00000176171|ENST00000368636|BNIP3;nc|ENSG00000104765|O60238-2|BNIP3L	ENSG00000176171|ENST00000368636|BNIP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.280517578125	2	506.279118	1010.54368	0.26263	0.00013296	1.9342	0.00097925	2.1968	0.0011122	506.2808137298486	62.956	1.8203	62.948	62.441	64.261	-0.0085564					138	66	4	0	0	0	0.0024096	1	15548	15548		106.94	54.672	1	10348000			10962	6905;1914	6197	6197	14110	14110					0.03883242074323334
GIFTKEDALKL	11	Unmodified	_GIFTKEDALKL_					0	0	0		nc|ENSG00000110435|O00330-3|PDHX;ENSG00000110435|ENST00000227868|PDHX	nc|ENSG00000110435|O00330-3|PDHX	nc|ENSG00000110435|O00330-3|PDHX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.239501953125	3	412.239573	1233.69689	0.05993	2.4706E-05	-0.27155	-0.00011194	-0.21162	-8.7237E-05	412.23940229449363	48.981	0.69038	48.981	48.798	49.488	0					49	24	3	0	0	0	0.39698	1	11291	11291		11.631	0	1	765160			10963	2312	6198	6198	14111	14111					0.08938812400106144
GIGALALKKF	10	Unmodified	_GIGALALKKF_					0	0	0			REV__nc|ENSG00000088325|Q9ULW0-2|TPX2	REV__nc|ENSG00000088325|Q9ULW0-2|TPX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2540283203125	2	509.326402	1016.63825	0.60648	0.0003089	-3.0596	-0.0015583	-2.4531	-0.0012494	509.32301381409127	44.826	0.11546	44.826	44.739	44.855	0					5	3	2	0	0	0	0.30586	1	9973	9973		18.135	4.6271	1	50767	+		10964	14006	6199	6199	14112	14112					0.1305980061632681
GIGKAIALK	9	Unmodified	_GIGKAIALK_					0	0	0		ENSG00000119471|ENST00000398805|HSDL2;nc|ENSG00000119471|Q6YN16-2|HSDL2	ENSG00000119471|ENST00000398805|HSDL2	ENSG00000119471|ENST00000398805|HSDL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.74517822265625	2	435.792195	869.569838	-0.25601	-0.00011157	-1.0841	-0.00047246	-1.3402	-0.00058403	435.7917234129093	27.447	0.3468	27.447	27.354	27.7	0					14	11	2	0	0	0	0.25202	1	4677	4677		10.824	0	1	44629			10965	2881	6200	6200	14113	14113					0.12983556036465416
GIGKVKRKPS	10	Unmodified	_GIGKVKRKPS_					0	0	0		ENSG00000158092|ENST00000481752|NCK1	ENSG00000158092|ENST00000481752|NCK1	ENSG00000158092|ENST00000481752|NCK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.646484375	2	535.345658	1068.67676	0.68963	0.00036919	-0.016695	-8.9378E-06	0.67293	0.00036025	535.3456551814485	32.577	0.2492	32.577	32.5	32.749	0					12	8	2	0	0	0	0.31165	1	6252	6252		15.847	7.937	1	62631			10966	5339	6201	6201	14114	14114					0.14517106250832512
GIGTQPLK	8	Unmodified	_GIGTQPLK_					0	0	0			REV__DNAH6|p.H151Q|1|0.35|ENSG00000115423|chr2:84528957-84528957|T/A|missense_variant	REV__DNAH6|p.H151Q|1|0.35|ENSG00000115423|chr2:84528957-84528957|T/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.8545837402344	2	407.245078	812.475603	-0.31363	-0.00012772	-0.34156	-0.0001391	-0.65519	-0.00026682	407.2448931058902	27.603	0.48442	27.582	27.291	27.776	-0.02141					18	16	2	0	0	0	0.32435	1	4720	4720		11.64	1.5664	1	57166	+		10967	13299	6202	6202	14115	14115					0.061864172143259566
GIIYEWDEQR	10	Unmodified	_GIIYEWDEQR_					0	0	0			REV__nc|ENSG00000125447|Q9NZ52-2|GGA3	REV__nc|ENSG00000125447|Q9NZ52-2|GGA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.27410888671875	3	436.878815	1307.61462	0.69019	0.00030153	0.6747	0.00029476	1.3649	0.00059629	436.8796863743672	33.874	0.25356	33.94	33.786	34.04	0.06636					12	8	2	0	0	0	0.32051	1	6616	6616		3.8763	2.5467	1	57203	+		10968	15266	6203	6203	14116	14116					-0.026887096788186682
GIKGISHLS	9	Unmodified	_GIKGISHLS_					0	0	0			REV__ENST00000498385.1_1_22:24236898-24237290:+|nuORF	REV__ENST00000498385.1_1_22:24236898-24237290:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7872009277344	2	456.269084	910.523616	0.37599	0.00017155	-0.064109	-2.9251E-05	0.31188	0.0001423	456.26895764677914	40.012	0.75539	40.105	39.83	40.585	0.09267					79	26	4	0	0	0	0.23775	1	8559	8559		18.135	4.6271	1	1694100	+		10969	19175	6204	6204	14117	14117					0.06477491134376123
GIKGISHLS	9	Unmodified	_GIKGISHLS_					0	0	0			REV__ENST00000498385.1_1_22:24236898-24237290:+|nuORF	REV__ENST00000498385.1_1_22:24236898-24237290:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.78704833984375	2	456.269084	910.523616	0.22684	0.0001035	0.034284	1.5643E-05	0.26113	0.00011914	456.26902783163587	39.95	0.87928	40.049	39.762	40.641	0.099407					91	31	4	0	0	0	0.20344	1	8524	8524		23.148	6.2061	1	1709700	+		10970	19175	6204	6204	14118	14118					0.06477491134376123
GIKVFLAML	9	Unmodified	_GIKVFLAML_					0	0	0		THE1D-int_dup324|chr2:208859014-208859767:+|2.4653422611636326|0.1480688773718127|4.06|526.0|4|1|sense	THE1D-int_dup324|chr2:208859014-208859767:+|2.4653422611636326|0.1480688773718127|4.06|526.0|4|1|sense	THE1D-int_dup324|chr2:208859014-208859767:+|2.4653422611636326|0.1480688773718127|4.06|526.0|4|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.30419921875	2	496.304081	990.59361	0.46381	0.00023019	-0.023995	-1.1909E-05	0.43982	0.00021828	496.3039549797635	72.194	1.7048	72.167	71.506	73.211	-0.027275					173	60	3	0	0	0	0.26879	1	18398	18398		13.508	4.9146	1	1114600			10971	23393	6205	6205	14119	14119					0.09793653478641318
GILEGNVTV	9	Unmodified	_GILEGNVTV_					0	0	0			REV__nc|ENSG00000123243|Q86UX2-3|ITIH5	REV__nc|ENSG00000123243|Q86UX2-3|ITIH5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2621765136719	2	451.2531	900.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.847	1	29.86	29.36	30.36	0.013474								0	0	0	0.23413	1	5386	5386		11.495	1.4208	1		+		10972	15183	6206	6206	14120	14120					0.03742078660582138
GILEHTLFK	9	Unmodified	_GILEHTLFK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000572445.1_1_17:1564285-1564453:-|nuORF;ENST00000573681.1_1_17:1563133-1564615:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2638549804688	2	529.305667	1056.59678	0.75838	0.00040141	0.44773	0.00023699	1.2061	0.0006384	529.3059829023563	47.473	0.38067	47.473	47.302	47.682	0					23	13	3	0	0	0	0.19686	1	10782	10782		31.268	14.155	1	245440			10973	6781	6207	6207	14121	14121					0.0707461985698501
GILHRHFK	8	Unmodified	_GILHRHFK_					0	0	0			REV__ENSG00000115677|ENST00000310931|HDLBP	REV__ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7754821777344	2	504.29851	1006.58247	0.39419	0.00019879	2.1943	0.0011066	2.5885	0.0013054	504.30045341529245	72.092	0.97804	72.092	71.582	72.56	0					62	35	3	0	0	0	0.29855	1	18353	18353		24.674	6.5389	1	304650	+		10974	14891	6208	6208	14122	14122					0.07944012219365959
GILHRHFK	8	Unmodified	_GILHRHFK_					0	0	0			REV__ENSG00000115677|ENST00000310931|HDLBP	REV__ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7754821777344	2	504.29851	1006.58247	0.41076	0.00020714	1.5992	0.00080648	2.01	0.0010136	504.29993702730076	71.938	1.2481	71.995	71.568	72.816	0.056572					75	45	3	0	0	0	0.29855	1	18322	18322		32.117	7.4431	1	307600	+		10975	14891	6208	6208	14123	14123					0.07944012219365959
GILINVVP	8	Unmodified	_GILINVVP_					0	0	0		L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|32|2|sense	L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|32|2|sense	L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|32|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2348327636719	2	412.765646	823.516739	0.21084	8.7028E-05	1.8511	0.00076409	2.062	0.00085112	412.76674947031	37.091	1.0946	37.091	36.358	37.452	0					60	38	2	0	0	0	0.34185	1	7439	7439		2.5775	0	1	211710			10976	12468	6209	6209	14124	14124					0.09792178253815109
GILKRALW	8	Unmodified	_GILKRALW_					0	0	0			REV__ENSG00000132341|ENST00000543796|RAN	REV__ENSG00000132341|ENST00000543796|RAN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2427978515625	2	478.805637	955.596721	0.22465	0.00010756	1.2432	0.00059527	1.4679	0.00070284	478.80606738432317	32.782	0.52391	32.837	32.675	33.199	0.055309					27	18	2	0	0	0	0.34297	1	6354	6354		2.8892	0	1	134330	+		10977	15562	6210	6210	14125	14125					0.11714664647661266
GILKRALW	8	Unmodified	_GILKRALW_					0	0	0			REV__ENSG00000132341|ENST00000543796|RAN	REV__ENSG00000132341|ENST00000543796|RAN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.24371337890625	2	478.805637	955.596721	0.22892	0.00010961	1.4991	0.00071776	1.728	0.00082737	478.80625152958964	32.735	0.49297	32.789	32.682	33.175	0.054371					29	17	2	0	0	0	0.34297	1	6294	6294		6.3541	0	1	85566	+		10978	15562	6210	6210	14126	14126					0.11714664647661266
GILSSFVF	8	Unmodified	_GILSSFVF_					0	0	0			REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2510681152344	2	435.242004	868.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.129	1	70.107	69.607	70.607	-0.022087								0	0	0	0.37078	1	17744	17744		5.2307	0	1		+		10979	17570	6211	6211	14127	14127					0.0299589898281738
GILWRVLFF	9	Unmodified	_GILWRVLFF_					0	0	0		ENST00000527958.5_1_11:117039007-117039196:+|nuORF	ENST00000527958.5_1_11:117039007-117039196:+|nuORF	ENST00000527958.5_1_11:117039007-117039196:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8429565429688	2	575.84222	1149.66989	0.23924	0.00013777	0.75044	0.00043214	0.98969	0.0005699	575.8425054517141	80.394	2.8523	80.459	78.561	81.414	0.065094					409	121	4	0	0	0	0.29662	3	20706	20399;20473;20706		9.3474	9.3474	1	5421400			10980	11576	6212	6212	14128;14129;14130	14130					0.10103793370262792
GILWRVLFF	9	Unmodified	_GILWRVLFF_					0	0	0		ENST00000527958.5_1_11:117039007-117039196:+|nuORF	ENST00000527958.5_1_11:117039007-117039196:+|nuORF	ENST00000527958.5_1_11:117039007-117039196:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8436889648438	2	575.84222	1149.66989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.08	1	111.07	110.57	111.57	-0.013939								0	0	0	0.26258	1	28928	28928		2.3027	0	1				10981	11576	6212	6212	14131	14131					0.10103793370262792
GINQRALQLLF	11	Unmodified	_GINQRALQLLF_					0	0	0		nc|ENSG00000140859|Q9BVG8-4|KIFC3;nc|ENSG00000140859|Q9BVG8-5|KIFC3;ENSG00000140859|ENST00000445690|KIFC3;nc|ENSG00000140859|Q9BVG8|KIFC3;nc|ENSG00000140859|Q9BVG8-6|KIFC3	nc|ENSG00000140859|Q9BVG8-4|KIFC3	nc|ENSG00000140859|Q9BVG8-4|KIFC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.56298828125	3	424.918945	1271.73501	-1.0255	-0.00043574	0.34715	0.00014751	-0.67832	-0.00028823	425.253639487041	35.106	0.30315	35.183	35.005	35.308	0.077377					24	10	4	0	0	0	0.33119	1	7015	7015		2.6312	0	1	94247			10982	4342	6213	6213	14132	14132					0.11000743105455513
GIPLPRSVAP	10	Unmodified	_GIPLPRSVAP_					0	0	0		ENST00000579096.1_1_17:73110716-73125130:+|nuORF;ENSG00000125449|ENST00000245543|ARMC7	ENST00000579096.1_1_17:73110716-73125130:+|nuORF	ENST00000579096.1_1_17:73110716-73125130:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.76556396484375	2	503.805834	1005.59712	0.27426	0.00013817	0.10087	5.0821E-05	0.37514	0.000189	503.8058565046513	23.178	0.3546	23.133	22.951	23.305	-0.044867					16	12	2	0	0	0	0.31358	1	3366	3366		9.3831	0.63772	1	54822			10983	3207	6214	6214	14133	14133					0.09454039576837658
GIQVYVENGKL	11	Unmodified	_GIQVYVENGKL_					0	0	0			REV__ENST00000455707.1_1_2:120933280-120974116:-|nuORF	REV__ENST00000455707.1_1_2:120933280-120974116:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.3377075195312	2	610.337695	1218.66084	0.49863	0.00030433	-0.42425	-0.00025894	0.074377	4.5395E-05	610.3374297130944	51.324	0.45533	51.324	51.081	51.536	0					40	16	3	0	0	0	0.30814	1	11960	11960		23.79	2.2528	1	667800	+		10984	21164	6215	6215	14134	14134					0.06025355223300721
GIRHEWECCF	10	Unmodified	_GIRHEWECCF_					0	0	0			REV__ENSG00000112079|ENST00000229812|STK38	REV__ENSG00000112079|ENST00000229812|STK38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.94195556640625	3	427.183076	1278.5274	-0.015562	-6.648E-06	-3.5116	-0.0015001	-3.5271	-0.0015067	427.5158001409347	37.734	0.13427	37.824	37.772	37.906	0.090881					5	4	2	0	0	0	0.32122	1	7796	7796		0.15932	0	1	109570	+		10985	14752	6216	6216	14135	14135					-0.10072530425713921
GIRKFKIGAK	10	Unmodified	_GIRKFKIGAK_					0	0	0			REV__nc|ENSG00000165732|Q9NR30-2|DDX21	REV__nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.364013671875	2	559.36385	1116.71315	0.23905	0.00013372	-0.12168	-6.8063E-05	0.11737	6.5654E-05	559.3637758992558	30.913	0.58319	30.913	30.619	31.202	0					61	20	4	0	0	0	0.37133	1	5720	5720		8.7454	2.0222	1	238580	+		10986	17263	6217	6217	14136	14136					0.1594598314754876
GIRKFKIGAK	10	Unmodified	_GIRKFKIGAK_					0	0	0			REV__nc|ENSG00000165732|Q9NR30-2|DDX21	REV__nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.3641967773438	2	559.36385	1116.71315	0.2384	0.00013335	-0.13273	-7.4246E-05	0.10567	5.9109E-05	559.3638672079602	30.853	0.75543	30.881	30.439	31.194	0.027946					63	26	4	0	0	0	0.37133	1	5730	5730		8.7454	2.0222	1	255900	+		10987	17263	6217	6217	14137	14137					0.1594598314754876
GIRKFKIGAK	10	Unmodified	_GIRKFKIGAK_					0	0	0			REV__nc|ENSG00000165732|Q9NR30-2|DDX21	REV__nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.3643188476562	2	559.36385	1116.71315	0.11459	6.4098E-05	-0.071872	-4.0203E-05	0.042719	2.3895E-05	559.3638873324525	30.844	0.57994	30.871	30.612	31.192	0.027157					61	20	4	0	0	0	0.38773	1	5721	5721		5.7319	1.7875	1	248450	+		10988	17263	6217	6217	14138	14138					0.1594598314754876
GIRKNCPFDY	10	Unmodified	_GIRKNCPFDY_					0	0	0		ADGRF4|p.C549Lfs*7|1|0.05|ENSG00000153294|chr6:47714890-47714891|-/TAATGTTAAA|frameshift_variant;ENSG00000153294|ENST00000283303|ADGRF4	ADGRF4|p.C549Lfs*7|1|0.05|ENSG00000153294|chr6:47714890-47714891|-/TAATGTTAAA|frameshift_variant	ADGRF4|p.C549Lfs*7|1|0.05|ENSG00000153294|chr6:47714890-47714891|-/TAATGTTAAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2239685058594	3	404.865852	1211.57573	-0.20863	-8.4468E-05	-1.0676	-0.00043224	-1.2762	-0.00051671	404.86551979879573	17.8	0.34167	17.74	17.53	17.872	-0.060429					18	11	2	0	0	0	0.32051	1	1691	1691		3.8763	2.1341	1	35405			10989	16	6218	6218	14139	14139					-0.02159713514174655
GIRQNTLAK	9	Unmodified	_GIRQNTLAK_					0	0	0			REV__ENSG00000121879|ENST00000263967|PIK3CA	REV__ENSG00000121879|ENST00000263967|PIK3CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7976989746094	2	500.79854	999.582528	0.60502	0.00030299	-0.44872	-0.00022472	0.15629	7.8271E-05	500.79790209397606	84.28	1.8809	84.28	83.859	85.74	0					158	73	4	0	0	0	0.25989	2	22041	22041;22085		14.838	1.7958	1	2938800	+		10990	15133	6219	6219	14140;14141	14140					0.08271967428709104
GIRQNTLAK	9	Unmodified	_GIRQNTLAK_					0	0	0			REV__ENSG00000121879|ENST00000263967|PIK3CA	REV__ENSG00000121879|ENST00000263967|PIK3CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.79833984375	2	500.79854	999.582528	0.56083	0.00028086	-0.36543	-0.000183	0.1954	9.7856E-05	500.7979073363671	84.158	2.954	84.235	83.274	86.228	0.077095					170	115	2	0	0	0	0.25989	1	22052	22052		14.838	0.93222	1	3131100	+		10991	15133	6219	6219	14142	14142					0.08271967428709104
GIRSALKRP	9	Unmodified	_GIRSALKRP_					0	0	0		ENSG00000121634|ENST00000369235|GJA8	ENSG00000121634|ENST00000369235|GJA8	ENSG00000121634|ENST00000369235|GJA8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.29315185546875	2	499.3169	996.619247	0.25756	0.0001286	-0.15609	-7.7936E-05	0.10147	5.0667E-05	499.31681404548976	17.723	0.3202	17.663	17.472	17.792	-0.060429					17	10	2	0	0	0	0.25988	1	1739	1739		3.9444	0.3479	1	35487			10992	3001	6220	6220	14143	14143					0.12080264045266631
GIRSALKRP	9	Unmodified	_GIRSALKRP_					0	0	0		ENSG00000121634|ENST00000369235|GJA8	ENSG00000121634|ENST00000369235|GJA8	ENSG00000121634|ENST00000369235|GJA8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	499.3169	996.619247	0.32598	0.00016277	-0.12967	-6.4748E-05	0.19631	9.8019E-05	499.31668236684925	17.532	0.29386	17.532	17.396	17.69	0	-0.071747	-8.9504E-05	NaN	3.9444	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31055			10993	3001	6220	6220							0.12080264045266631
GIRSALKRP	9	Unmodified	_GIRSALKRP_					0	0	0		ENSG00000121634|ENST00000369235|GJA8	ENSG00000121634|ENST00000369235|GJA8	ENSG00000121634|ENST00000369235|GJA8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	499.3169	996.619247	0.17411	8.6939E-05	0.42629	0.00021285	0.6004	0.00029979	499.31710708723807	17.734	0.20539	17.616	17.489	17.694	-0.11739	0.012674	0.00046569	NaN	3.9444	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51771			10994	3001	6220	6220							0.12080264045266631
GISFVSEPLFK	11	Unmodified	_GISFVSEPLFK_					0	0	0		ENST00000394095.6_1_3:101062560-101062668:-|nuORF	ENST00000394095.6_1_3:101062560-101062668:-|nuORF	ENST00000394095.6_1_3:101062560-101062668:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.7384643554688	2	612.337164	1222.65977	-0.3851	-0.00023581	2.6079	0.0015969	2.2228	0.0013611	612.3389810423937	60.019	0.40355	60.114	60.019	60.422	0.095093					21	14	2	0	0	0	0.32625	1	14637	14637		20.415	12.259	1	289640			10995	10061	6221	6221	14144	14144					0.05735140854358178
GISFVSEPLFK	11	Unmodified	_GISFVSEPLFK_					0	0	0		ENST00000394095.6_1_3:101062560-101062668:-|nuORF	ENST00000394095.6_1_3:101062560-101062668:-|nuORF	ENST00000394095.6_1_3:101062560-101062668:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	612.337164	1222.65977	0.045616	2.7932E-05	2.1986	0.0013463	2.2442	0.0013742	612.3383962267603	60.222	0.38082	60.21	59.997	60.378	-0.011486	0.048044	-0.00016256	NaN	20.415	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213220			10996	10061	6221	6221							0.05735140854358178
GISKLKKF	8	Unmodified	_GISKLKKF_					0	0	0		ENST00000536163.5_2_7:141360786-141361083:-|nuORF	ENST00000536163.5_2_7:141360786-141361083:-|nuORF	ENST00000536163.5_2_7:141360786-141361083:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.2574157714844	2	460.80002	919.585488	-0.1285	-5.9213E-05	0.52107	0.00024011	0.39257	0.0001809	460.8002138962094	22.72	0.58979	22.633	22.403	22.993	-0.087608					33	20	2	0	0	0	0.34247	1	3263	3263		8.5933	0	1	121650			10997	11680	6222	6222	14145	14145					0.12247842553517785
GISPKLLLM	9	Unmodified	_GISPKLLLM_					0	0	0			REV__ENST00000395841.6_1_20:55931574-55941920:+|nuORF	REV__ENST00000395841.6_1_20:55931574-55941920:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7998046875	2	486.301539	970.588524	0.42662	0.00020747	-0.14879	-7.2357E-05	0.27783	0.00013511	486.30149933664086	43.963	4.4237	44.047	43.604	48.027	0.083992					302	162	2	0	0	0	0.23783	1	10514	10514		7.9102	3.1541	1	1333700	+		10998	20643	6223	6223	14146	14146					0.10205349616035164
GISPKLLLM	9	Unmodified	_GISPKLLLM_					0	0	0			REV__ENST00000395841.6_1_20:55931574-55941920:+|nuORF	REV__ENST00000395841.6_1_20:55931574-55941920:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	486.301539	970.588524	0.34444	0.0001675	-0.051877	-2.5228E-05	0.29256	0.00014227	486.30153252612087	43.975	4.3561	44.053	43.567	47.923	0.077515	0.089985	2.825E-05	NaN	7.9102	237	159	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1431300	+		10999	20643	6223	6223							0.10205349616035164
GISPPILQK	9	Unmodified	_GISPPILQK_					0	0	0		L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|91|2|sense	L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|91|2|sense	L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|91|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7938537597656	2	476.794935	951.575317	0.11854	5.6521E-05	0.17893	8.5314E-05	0.29748	0.00014184	476.7949184819114	41.72	0.81099	41.72	41.355	42.166	0					53	33	2	0	0	0	0.0042343	2	9027	9027;9056		92.491	14.342	1	3613800			11000	12492	6224	6224	14147;14148	14147					0.09759234828277386
GISPPILQK	9	Unmodified	_GISPPILQK_					0	0	0		L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|91|2|sense	L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|91|2|sense	L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|91|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7951965332031	2	476.794935	951.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.585	1	41.675	41.175	42.175	0.090252								0	0	0	0.0090064	1	8978	8978		81.89	6.9612	1				11001	12492	6224	6224	14149	14149					0.09759234828277386
GISPPILQK	9	Unmodified	_GISPPILQK_					0	0	0		L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|91|2|sense	L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|91|2|sense	L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|91|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7971496582031	2	476.794935	951.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.668	1	41.758	41.258	42.258	0.090252								0	0	0	0.0090064	1	9004	9004		81.89	6.9612	1				11002	12492	6224	6224	14150	14150					0.09759234828277386
GISPPILQK	9	Unmodified	_GISPPILQK_					0	0	0		L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|91|2|sense	L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|91|2|sense	L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|91|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7947082519531	2	476.794935	951.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.803	1	41.893	41.393	42.393	0.090252								0	0	0	0.044423	1	9045	9045		62.573	12.64	1				11003	12492	6224	6224	14151	14151					0.09759234828277386
GISPPILQK	9	Unmodified	_GISPPILQK_					0	0	0		L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|91|2|sense	L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|91|2|sense	L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|91|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.7960205078125	2	476.794935	951.575317	0.49467	0.00023585	-0.26683	-0.00012722	0.22783	0.00010863	476.7948034710178	41.506	0.92315	41.603	41.259	42.183	0.096626					54	36	2	0	0	0	0.0083926	3	8989	8936;8989;9038		81.89	6.9612	1	3876500			11004	12492	6224	6224	14152;14153;14154	14153					0.09759234828277386
GISVKEHF	8	Unmodified	_GISVKEHF_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-3|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.27923583984375	2	458.747985	915.481417	0.10172	4.6663E-05	0.19952	9.153E-05	0.30124	0.00013819	458.747853179358	28.968	0.88479	28.976	28.67	29.554	0.0070972					69	30	3	0	0	0	0.29855	1	5270	5270		32.117	11.246	1	190210			11005	374	6225	6225	14155	14155					0.02029515725996589
GISVKEHF	8	Unmodified	_GISVKEHF_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-3|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2791748046875	2	458.747985	915.481417	0.013674	6.2728E-06	0.37554	0.00017228	0.38922	0.00017855	458.7480287682822	29.038	1.0101	29.052	28.674	29.684	0.013474					59	35	3	0	0	0	0.29855	1	5274	5274		24.674	10.092	1	215820			11006	374	6225	6225	14156	14156					0.02029515725996589
GITASKVAL	9	Unmodified	_GITASKVAL_					0	0	0		ENST00000382313.2_1_16:2787232-2787705:-|nuORF;ENST00000573802.1_1_16:2787232-2793608:-|nuORF	ENST00000382313.2_1_16:2787232-2787705:-|nuORF	ENST00000382313.2_1_16:2787232-2787705:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.2514343261719	2	430.26601	858.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.28	1	73.334	72.834	73.834	0.053833								0	0	0	0.22457	1	18713	18713		14.582	3.4672	1				11007	10007	6226	6226	14157	14157					0.08254972902852842
GITGPIAKLI	10	Unmodified	_GITGPIAKLI_					0	0	0		ENSG00000188643|ENST00000368706|S100A16;ENST00000474991.1_1_1:153580012-153580192:-|nuORF	ENSG00000188643|ENST00000368706|S100A16	ENSG00000188643|ENST00000368706|S100A16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.26361083984375	2	491.81841	981.622267	0.43585	0.00021436	-0.42606	-0.00020955	0.009789	4.8144E-06	491.8184417271523	58.65	0.52755	58.65	58.468	58.996	0					22	17	2	0	0	0	0.3156	1	14246	14246		10.824	2.9138	1	197500			11008	7763	6227	6227	14158	14158					0.1307209437942447
GITGPIAKLI	10	Unmodified	_GITGPIAKLI_					0	0	0		ENSG00000188643|ENST00000368706|S100A16;ENST00000474991.1_1_1:153580012-153580192:-|nuORF	ENSG00000188643|ENST00000368706|S100A16	ENSG00000188643|ENST00000368706|S100A16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2635803222656	2	491.81841	981.622267	0.58783	0.0002891	0.20008	9.8403E-05	0.78791	0.00038751	491.8188241288527	58.673	0.41535	58.658	58.416	58.831	-0.014271					19	14	2	0	0	0	0.3156	1	14269	14269		10.824	1.4765	1	189400			11009	7763	6227	6227	14159	14159					0.1307209437942447
GITHALRK	8	Unmodified	_GITHALRK_					0	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.2651672363281	2	448.277244	894.539935	0.32944	0.00014768	-0.55757	-0.00024995	-0.22814	-0.00010227	448.2769925700602	20.344	0.73394	20.234	19.875	20.609	-0.11003					40	26	3	0	0	0	0.34092	1	2601	2601		13.508	0.97634	1	135040	+		11010	14459	6228	6228	14160	14160					0.08844617091131113
GITVISDLL	9	Unmodified	_GITVISDLL_					0	0	0		ENSG00000158683|ENST00000289672|PKD1L1;nc|ENSG00000158683|Q8TDX9-2|PKD1L1	ENSG00000158683|ENST00000289672|PKD1L1	ENSG00000158683|ENST00000289672|PKD1L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7776184082031	2	465.778951	929.543348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.861	1	73.83	73.33	74.33	-0.030655								0	0	0	0.22377	1	18884	18884		14.838	0	1				11011	5368	6229	6229	14161	14161					0.07575822354476713
GIVEFNWKRHR	11	Unmodified	_GIVEFNWKRHR_					0	0	0		ENST00000469739.6_1_17:18188617-18210429:-|nuORF;nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A	ENST00000469739.6_1_17:18188617-18210429:-|nuORF	ENST00000469739.6_1_17:18188617-18210429:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.26483154296875	3	481.265227	1440.77385	0.10844	5.219E-05	-0.7255	-0.00034916	-0.61706	-0.00029697	481.26470129198304	42.687	0.7318	42.773	42.539	43.271	0.085197					74	26	4	0	0	0	0.4112	1	9357	9357		9.7643	0.52048	1	1941200			11012	6976	6230	6230	14162	14162					0.07109468459816526
GIVEFNWKRHR	11	Unmodified	_GIVEFNWKRHR_					0	0	0		ENST00000469739.6_1_17:18188617-18210429:-|nuORF;nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A	ENST00000469739.6_1_17:18188617-18210429:-|nuORF	ENST00000469739.6_1_17:18188617-18210429:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2648010253906	3	481.265227	1440.77385	0.1021	4.9139E-05	-0.76416	-0.00036776	-0.66206	-0.00031863	481.2647274456726	42.623	0.71012	42.715	42.413	43.123	0.091362					77	25	4	0	0	0	0.4112	1	9316	9316		9.7643	0.52048	1	1791700			11013	6976	6230	6230	14163	14163					0.07109468459816526
GIVKYETSKNT	11	Unmodified	_GIVKYETSKNT_					0	0	0			REV__ENST00000341617.7_1_7:126079175-126341814:-|nuORF	REV__ENST00000341617.7_1_7:126079175-126341814:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.2140808105469	3	413.890832	1238.65067	-0.071586	-2.9629E-05	1.1587	0.00047958	1.0871	0.00044995	413.8914305705962	17.512	0.59776	17.512	17.122	17.719	0					26	20	2	0	0	0	0.44828	1	1693	1693		2.2527	0.51045	1	54475	+		11014	18084	6231	6231	14164	14164					0.040887474980536354
GIVQNKMQF	9	Unmodified	_GIVQNKMQF_					0	0	0			REV__ENST00000375249.4_1_9:99220702-99227653:+|nuORF	REV__ENST00000375249.4_1_9:99220702-99227653:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3132934570312	2	532.781502	1063.54845	0.49473	0.00026358	-0.012567	-6.6952E-06	0.48217	0.00025689	532.7816517263466	55.626	0.40802	55.626	55.35	55.758	0					22	14	2	0	0	0	0.21905	1	13278	13278		23.148	2.2772	1	195900	+		11015	20474	6232	6232	14165	14165					0.019218029454577845
GIWLPTRLGRA	11	Unmodified	_GIWLPTRLGRA_					0	0	0			REV__ENSG00000011028|ENST00000303375|MRC2	REV__ENSG00000011028|ENST00000303375|MRC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3690795898438	2	620.369664	1238.72478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.86	1	115.84	115.34	116.34	-0.020988								0	0	0	0.38071	1	30031	30031		1.4819	0	1		+		11016	13423	6233	6233	14166	14166					0.11496180170888692
GIWPTPSFLWL	11	Unmodified	_GIWPTPSFLWL_					0	0	0		ENST00000470411.2_1_16:624643-626255:+|nuORF	ENST00000470411.2_1_16:624643-626255:+|nuORF	ENST00000470411.2_1_16:624643-626255:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.2366638183594	3	439.572775	1315.69649	-0.093612	-4.1149E-05	1.9235	0.00084554	1.8299	0.00080439	439.57369957779457	23.503	0.25407	23.503	23.362	23.616	0					11	8	2	0	0	0	0.32774	1	3452	3452		13.519	9.1125	1	32738			11017	10864	6234	6234	14167	14167					0.05127437470946461
GIYAYGFEK	9	Unmodified	_GIYAYGFEK_					0	0	0		nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENST00000465267.5_1_3:186501384-186502902:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000575957.1_1_17:78115565-78120760:-|nuORF;ENST00000467585.1_1_3:186502182-186503751:+|nuORF;ENST00000584054.5_1_17:7476159-7478064:+|nuORF;ENST00000486805.5_1_3:186501384-186502505:+|nuORF;ENST00000485101.5_1_3:186501384-186502505:+|nuORF;ENST00000465222.1_1_3:186502277-186502505:+|nuORF;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000141543|ENST00000649764|EIF4A3	nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1;ENSG00000141543|ENST00000649764|EIF4A3	nc|ENSG00000156976|Q14240-2|EIF4A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2606811523438	2	524.260925	1046.5073	0.36756	0.0001927	-0.6716	-0.00035209	-0.30404	-0.00015939	524.2604022157925	46.161	0.67814	46.161	45.888	46.566	0					60	24	3	0	0	0	0.012386	2	10354	10354;10404		75.761	35.804	1	1940700			11018	5273;5538;4391	6235	6235	14168;14169	14168					-0.014096348223802124
GIYAYGFEK	9	Unmodified	_GIYAYGFEK_					0	0	0		nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENST00000465267.5_1_3:186501384-186502902:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000575957.1_1_17:78115565-78120760:-|nuORF;ENST00000467585.1_1_3:186502182-186503751:+|nuORF;ENST00000584054.5_1_17:7476159-7478064:+|nuORF;ENST00000486805.5_1_3:186501384-186502505:+|nuORF;ENST00000485101.5_1_3:186501384-186502505:+|nuORF;ENST00000465222.1_1_3:186502277-186502505:+|nuORF;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000141543|ENST00000649764|EIF4A3	nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1;ENSG00000141543|ENST00000649764|EIF4A3	nc|ENSG00000156976|Q14240-2|EIF4A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2606811523438	2	524.260925	1046.5073	0.24532	0.00012861	-0.21392	-0.00011215	0.031403	1.6463E-05	524.2605462172648	45.9	0.71806	45.959	45.647	46.365	0.059834					63	25	3	0	0	0	0.0059482	2	10284	10284;10337		85.642	45.684	1	2227700			11019	5273;5538;4391	6235	6235	14170;14171	14170					-0.014096348223802124
GIYAYGFEK	9	Unmodified	_GIYAYGFEK_					0	0	0		nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENST00000465267.5_1_3:186501384-186502902:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000575957.1_1_17:78115565-78120760:-|nuORF;ENST00000467585.1_1_3:186502182-186503751:+|nuORF;ENST00000584054.5_1_17:7476159-7478064:+|nuORF;ENST00000486805.5_1_3:186501384-186502505:+|nuORF;ENST00000485101.5_1_3:186501384-186502505:+|nuORF;ENST00000465222.1_1_3:186502277-186502505:+|nuORF;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENSG00000141543|ENST00000649764|EIF4A3	nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1;ENSG00000141543|ENST00000649764|EIF4A3	nc|ENSG00000156976|Q14240-2|EIF4A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2608642578125	2	524.260925	1046.5073	0.64499	0.00033815	-0.52142	-0.00027336	0.12357	6.4784E-05	524.2604848633864	45.858	0.85384	45.923	45.623	46.476	0.065048					72	30	3	0	0	0	0.0059482	3	10261	10261;10311;10363		85.642	45.684	1	2148200			11020	5273;5538;4391	6235	6235	14172;14173;14174	14172					-0.014096348223802124
GIYERQDYFS	10	Unmodified	_GIYERQDYFS_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.5316467285156	3	426.531415	1276.57242	-0.23434	-9.9953E-05	0.47288	0.0002017	0.23854	0.00010174	426.5317278437473	23.498	1.0886	23.498	23.224	24.312	0					113	37	4	0	0	0	0.34325	3	3485	3434;3485;3535		8.4443	4.3277	1	1283500	+		11021	16613	6236	6236	14175;14176;14177	14176					-0.05480685087195525
GIYERQDYFS	10	Unmodified	_GIYERQDYFS_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.5316162109375	3	426.531415	1276.57242	-0.18713	-7.9819E-05	0.14258	6.0817E-05	-0.04455	-1.9002E-05	426.5316819276311	23.639	1.2034	23.566	23.124	24.327	-0.072559					150	41	6	0	0	0	0.34325	3	3476	3476;3523;3566		8.4443	2.2099	1	1090600	+		11022	16613	6236	6236	14178;14179;14180	14178					-0.05480685087195525
GIYERQDYFS	10	Unmodified	_GIYERQDYFS_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.5316162109375	3	426.531415	1276.57242	0.020822	8.8812E-06	0.36604	0.00015613	0.38686	0.00016501	426.5316162312786	23.652	1.2471	23.613	23.231	24.478	-0.038927					118	43	4	0	0	0	0.36786	2	3527	3527;3571		5.4027	1.2861	1	1168400	+		11023	16613	6236	6236	14181;14182	14181					-0.05480685087195525
GIYHIREVYK	10	Unmodified	_GIYHIREVYK_					0	0	0			REV__nc|ENSG00000103415|P30519-2|HMOX2	REV__nc|ENSG00000103415|P30519-2|HMOX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.5316467285156	3	426.571545	1276.69281	-0.21721	-9.2656E-05	-2.9166	-0.0012441	-3.1338	-0.0013368	426.904803584191	23.733	0.31675	23.733	23.513	23.829	0					14	10	2	0	0	0	0.31942	1	3485	3485		6.1918	4.1058	1	31332	+		11024	14372	6237	6237	14183	14183					0.06552767697075979
GIYHIREVYK	10	Unmodified	_GIYHIREVYK_					0	0	0			REV__nc|ENSG00000103415|P30519-2|HMOX2	REV__nc|ENSG00000103415|P30519-2|HMOX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.5315856933594	3	426.571545	1276.69281	-0.16264	-6.9378E-05	-3.2348	-0.0013799	-3.3975	-0.0014493	426.57027395107843	23.778	0.23289	23.705	23.646	23.879	-0.072559					11	7	2	0	0	0	0.31994	1	3566	3566		5.4027	0.99656	1	37803	+		11025	14372	6237	6237	14184	14184					0.06552767697075979
GIYQLPHF	8	Unmodified	_GIYQLPHF_					0	0	0			REV__nc|ENSG00000083642|Q9NTI5-3|PDS5B	REV__nc|ENSG00000083642|Q9NTI5-3|PDS5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2848205566406	2	487.758352	973.502152	0.3827	0.00018666	0.27529	0.00013428	0.65799	0.00032094	487.7583718057631	55.605	0.78767	55.586	55.319	56.107	-0.019081					79	28	4	0	0	0	0.31375	1	13308	13308		26.341	5.4701	1	3579600	+		11026	21699	6238	6238	14185	14185					0.014341061056597937
GIYSVMIQK	9	Oxidation (M)	_GIYSVM(Oxidation (M))IQK_		GIYSVM(1)IQK		GIYSVM(86)IQK	0	0	1		ENSG00000187688|ENST00000338560|TRPV2;ENST00000583241.1_1_17:16331654-16335285:+|nuORF	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.8055419921875	2	527.78371	1053.55287	0.66601	0.00035151	-0.36685	-0.00019362	0.29915	0.00015789	527.7834086002243	40.357	0.44606	40.357	40.104	40.55	0					28	15	2	0	0	0	0.016005	1	8604	8604		85.642	51.539	1	306520			11027	7700	6239	6239	14186	14186		849			0.028232673683532994
GIYSVMIQK	9	Oxidation (M)	_GIYSVM(Oxidation (M))IQK_		GIYSVM(1)IQK		GIYSVM(76)IQK	0	0	1		ENSG00000187688|ENST00000338560|TRPV2;ENST00000583241.1_1_17:16331654-16335285:+|nuORF	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7841796875	2	527.78371	1053.55287	0.61238	0.00032321	0.033719	1.7796E-05	0.6461	0.000341	527.7833569984718	40.114	0.6153	40.213	39.977	40.592	0.099403					42	21	3	0	0	0	0.012386	1	8528	8528		75.761	31.903	1	395370			11028	7700	6239	6239	14187	14187		849			0.028232673683532994
GIYYLYPF	8	Unmodified	_GIYYLYPF_					0	0	0		ENSG00000163982|ENST00000296358|OTOP1	ENSG00000163982|ENST00000296358|OTOP1	ENSG00000163982|ENST00000296358|OTOP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.295654296875	2	518.262936	1034.51132	0.17166	8.8964E-05	-0.55613	-0.00028822	-0.38447	-0.00019926	518.2624785078682	49.363	0.34223	49.395	49.18	49.522	0.032043					15	11	2	0	0	0	0.34147	1	11396	11396		6.3541	0	1	126120			11029	5767	6240	6240	14188	14188					-0.0045554532866844966
GKAGLLVMAL	10	Unmodified	_GKAGLLVMAL_					0	0	0			REV__ENSG00000170542|ENST00000380698|SERPINB9	REV__ENSG00000170542|ENST00000380698|SERPINB9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.77935791015625	2	486.799163	971.583773	0.24061	0.00011713	0.85054	0.00041404	1.0911	0.00053117	486.80111674387945	49.977	0.20971	49.977	49.868	50.077	0					17	7	4	0	0	0	0.31482	1	11553	11553		11.64	0.81637	1	256960	+		11030	17584	6241	6241	14189	14189					0.09684465473253567
GKDKLSVSRP	10	Unmodified	_GKDKLSVSRP_					0	0	0			REV__ENSG00000273079|ENST00000609686|GRIN2B	REV__ENSG00000273079|ENST00000609686|GRIN2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2801513671875	2	543.81693	1085.61931	0.34683	0.00018861	-0.47242	-0.00025691	-0.1256	-6.8301E-05	543.8168363853681	18.258	0.28588	18.258	18.077	18.363	0					14	9	2	0	0	0	0.32101	1	1889	1889		2.4985	0.65425	1	31587	+		11031	19319	6242	6242	14190	14190					0.07992219254629163
GKDVSTSYR	9	Unmodified	_GKDVSTSYR_					0	0	0		nc|ENSG00000081026|Q5TCQ9-3|MAGI3;ENSG00000081026|ENST00000307546|MAGI3;nc|ENSG00000081026|Q5TCQ9-2|MAGI3;nc|ENSG00000081026|Q5TCQ9-1|MAGI3	nc|ENSG00000081026|Q5TCQ9-3|MAGI3	nc|ENSG00000081026|Q5TCQ9-3|MAGI3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2900390625	2	506.756538	1011.49852	0.40568	0.00020558	-0.93614	-0.00047439	-0.53045	-0.00026881	506.7561248885122	37.268	0.91897	37.361	36.872	37.791	0.093014					45	33	2	0	0	0	0.24688	1	7631	7631		10.074	0	1	246590			11032	1175	6243	6243	14191	14191					-0.006766084588548438
GKELHDNFLL	10	Unmodified	_GKELHDNFLL_					0	0	0		ENST00000575812.1_1_16:3358749-3362115:+|nuORF	ENST00000575812.1_1_16:3358749-3362115:+|nuORF	ENST00000575812.1_1_16:3358749-3362115:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.3032836914062	2	593.316763	1184.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.918	1	74.918	74.418	75.418	0								0	0	0	0.36922	1	19221	19221		6.7232	0.96273	1				11033	12049	6244	6244	14192	14192					0.034047995347464166
GKETFSIQK	9	Unmodified	_GKETFSIQK_					0	0	0			REV__ENST00000567870.1_1_16:34619364-34619451:-|nuORF	REV__ENST00000567870.1_1_16:34619364-34619451:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7770385742188	2	519.284931	1036.55531	0.59524	0.0003091	-0.004552	-2.3638E-06	0.59069	0.00030674	519.2851628166599	40.563	0.67707	40.563	40.283	40.96	0					46	24	3	0	0	0	0.079752	1	8715	8715		41.84	1.8899	1	702740	+		11034	22385	6245	6245	14193	14193					0.03849439097643881
GKFPLELVQ	9	Unmodified	_GKFPLELVQ_					0	0	0			REV__ENSG00000117601|ENST00000367698|SERPINC1	REV__ENSG00000117601|ENST00000367698|SERPINC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2481079101562	2	515.800217	1029.58588	0.29612	0.00015274	0.35062	0.00018085	0.64674	0.00033359	515.8004109497409	59.074	0.6455	59.074	58.8	59.445	0					42	22	2	0	0	0	0.23784	1	14407	14407		19.257	2.3147	1	413740	+	+	11035	13258	6246	6246	14194	14194					0.07227217482682136
GKGRNYLPGLA	11	Unmodified	_GKGRNYLPGLA_					0	0	0			REV__ENST00000597636.5_1_19:50162907-50164809:-|nuORF	REV__ENST00000597636.5_1_19:50162907-50164809:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.757568359375	2	573.324922	1144.63529	0.57544	0.00032991	2.6485	0.0015185	3.224	0.0018484	573.326182720264	45.57	0.45583	45.63	45.336	45.792	0.059837					22	15	2	0	0	0	0.32996	1	10136	10136		8.1555	1.4324	1	138880	+		11036	22613	6247	6247	14195	14195					0.06875925491522139
GKKGVKNEVP	10	Unmodified	_GKKGVKNEVP_					0	0	0			REV__ENST00000418132.7_1_17:38296747-38323177:+|nuORF	REV__ENST00000418132.7_1_17:38296747-38323177:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3165283203125	2	528.314023	1054.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.75	1	112.76	112.26	113.26	0.013885								0	0	0	0.38126	1	29337	29337		1.6526	0.17072	1		+		11037	14588	6248	6248	14196	14196					0.08837120742941806
GKKGYVPSNYI	11	Unmodified	_GKKGYVPSNYI_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.2239074707031	3	409.224034	1224.65027	0.44783	0.00018326	-0.13858	-5.6712E-05	0.30924	0.00012655	409.22389823154924	47.837	1.1729	47.885	47.428	48.601	0.047523					119	43	4	0	0	0	0.42246	1	10976	10976		8.2864	0.34103	1	8502900			11038	2132	6249	6249	14197	14197					0.04693372568840459
GKKKLRAEL	9	Unmodified	_GKKKLRAEL_					0	0	0			REV__ENST00000517521.5_1_8:30240060-30242719:-|nuORF	REV__ENST00000517521.5_1_8:30240060-30242719:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2684326171875	2	521.840208	1041.66586	0.76759	0.00040056	-0.33217	-0.00017334	0.43541	0.00022722	521.8400217527034	37.044	0.44048	37.044	36.844	37.285	0					24	15	2	0	0	0	0.25431	1	7649	7649		9.3831	4.0862	1	173820	+		11039	21853	6250	6250	14198	14198					0.14669703876552376
GKLALLQK	8	Unmodified	_GKLALLQK_					0	0	0			REV__ENSG00000152620|ENST00000381937|NADK2	REV__ENSG00000152620|ENST00000381937|NADK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.93475341796875	2	435.792195	869.569838	-0.28906	-0.00012597	0.16709	7.2816E-05	-0.12197	-5.3152E-05	435.792364765824	27.497	0.35681	27.486	27.318	27.675	-0.01156					14	11	2	0	0	0	0.34131	1	4685	4685		7.9102	0	1	56650	+		11040	16590	6251	6251	14199	14199					0.12983556036465416
GKLLKFQLLQI	11	Unmodified	_GKLLKFQLLQI_					0	0	0		ENSG00000155761|ENST00000336338|SPAG17;SPAG17|p.E1006Sfs*10|1|0.32|ENSG00000155761|chr1:118041842-118041842|T/-|frameshift_variant	ENSG00000155761|ENST00000336338|SPAG17	ENSG00000155761|ENST00000336338|SPAG17	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.2747497558594	3	434.283224	1299.82784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.091	1	81.091	80.591	81.591	0								0	0	0	0.37452	1	21107	21107		2.8433	1.5136	1				11041	5195	6252	6252	14200	14200					0.18992247838832554
GKNKRGPLPF	10	Unmodified	_GKNKRGPLPF_					0	0	0			REV__ENSG00000197885|ENST00000425478|NKIRAS1	REV__ENSG00000197885|ENST00000425478|NKIRAS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3458862304688	2	557.330008	1112.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.135	1	97.13	96.63	97.63	-0.0055466								0	0	0	0.35948	1	25997	25997		10.824	2.9138	1		+		11042	18776	6253	6253	14201	14201					0.09364533216739801
GKNKRGPLPF	10	Unmodified	_GKNKRGPLPF_					0	0	0			REV__ENSG00000197885|ENST00000425478|NKIRAS1	REV__ENSG00000197885|ENST00000425478|NKIRAS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.34619140625	2	557.330008	1112.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.269	1	97.264	96.764	97.764	-0.0055466								0	0	0	0.35948	1	26036	26036		10.824	2.9138	1		+		11043	18776	6253	6253	14202	14202					0.09364533216739801
GKNVTVKTIKK	11	Unmodified	_GKNVTVKTIKK_					0	0	0		ENST00000319092.5_1_1:117075690-117076050:-|nuORF;ENST00000528363.5_1_11:2975753-2985939:-|nuORF;ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4	ENST00000319092.5_1_1:117075690-117076050:-|nuORF	ENST00000319092.5_1_1:117075690-117076050:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5368957519531	3	405.930962	1214.77106	-0.19388	-7.8702E-05	0.66221	0.00026881	0.46833	0.00019011	405.93101810091343	41.234	0.15935	41.324	41.243	41.403	0.090248					8	5	2	0	0	0	0.33296	1	8865	8865		2.6312	1.4164	1	98226			11044	9369	6254	6254	14203	14203					0.17226200282289028
GKPAIGTQK	9	Unmodified	_GKPAIGTQK_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2696838378906	2	450.269084	898.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.422	1	81.398	80.898	81.898	-0.02404								0	0	0	0.2505	1	21190	21190		6.2058	0.97511	1				11045	5306	6255	6255	14204	14204					0.07029491134369437
GKPAIGTQK	9	Unmodified	_GKPAIGTQK_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2696228027344	2	450.269084	898.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.566	1	83.55	83.05	84.05	-0.016823								0	0	0	0.2575	1	21853	21853		3.9444	1.0552	1				11046	5306	6255	6255	14205	14205					0.07029491134369437
GKPHKRGK	8	Unmodified	_GKPHKRGK_					0	0	0			REV__ENST00000478441.1_1_3:186333572-186335301:+|nuORF	REV__ENST00000478441.1_1_3:186333572-186335301:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2838439941406	2	454.28286	906.551168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.954	1	89.045	88.545	89.545	0.090569								0	0	0	0.37724	1	23512	23512		2.3027	0.24298	1		+		11047	21452	6256	6256	14206	14206					0.0941543918527259
GKPKKSRSS	9	Unmodified	_GKPKKSRSS_					0	0	0			REV__nc|ENSG00000158711|P28324-2|ELK4	REV__nc|ENSG00000158711|P28324-2|ELK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.790771484375	2	487.790715	973.566878	0.29402	0.00014342	0.38023	0.00018547	0.67426	0.0003289	487.790789876972	74.046	2.9193	74.046	73.191	76.11	0					194	103	2	0	0	0	0.29176	4	19434	18906;19131;19434;19481		10.074	8.7454	1	5545500	+		11048	16821	6257	6257	14207;14208;14209;14210	14209					0.07903680911658739
GKPKKSRSS	9	Unmodified	_GKPKKSRSS_					0	0	0			REV__nc|ENSG00000158711|P28324-2|ELK4	REV__nc|ENSG00000158711|P28324-2|ELK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.79083251953125	2	487.790715	973.566878	0.24343	0.00011874	0.49529	0.0002416	0.73872	0.00036034	487.7907981143787	74.006	2.99	74.058	73.198	76.188	0.052361					206	107	2	0	0	0	0.2719	5	19138	18893;19138;19239;19386;19434		13.042	13.042	1	5281400	+		11049	16821	6257	6257	14211;14212;14213;14214;14215	14212					0.07903680911658739
GKPKKSRSS	9	Unmodified	_GKPKKSRSS_					0	0	0			REV__nc|ENSG00000158711|P28324-2|ELK4	REV__nc|ENSG00000158711|P28324-2|ELK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7908630371094	2	487.790715	973.566878	0.37224	0.00018158	0.20913	0.00010201	0.58138	0.00028359	487.79069538336256	74.179	3.0113	74.148	73.152	76.163	-0.030655					175	109	2	0	0	0	0.29176	2	19166	19121;19166		10.074	6.2058	1	5822500	+		11050	16821	6257	6257	14216;14217	14217					0.07903680911658739
GKPLNPVL	8	Unmodified	_GKPLNPVL_					0	0	0			REV__nc|ENSG00000171992|Q8N3V7-3|SYNPO	REV__nc|ENSG00000171992|Q8N3V7-3|SYNPO	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.2572326660156	2	419.263271	836.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.228	1	86.312	85.812	86.812	0.084251								0	0	0	0.37078	1	22677	22677		5.2307	0	1		+		11051	17684	6258	6258	14218	14218					0.08719294111040199
GKPPLQPL	8	Unmodified	_GKPPLQPL_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.75262451171875	2	425.263271	848.511988	-0.07413	-3.1525E-05	-0.18169	-7.7268E-05	-0.25582	-0.00010879	425.263318741529	58.837	1.5132	58.928	58.56	60.073	0.091301					175	53	6	0	0	0	0.42446	1	14262	14262		14.582	5.2343	1	9340600	+		11052	17936	6259	6259	14219	14219					0.08167294111046886
GKPQGTVAR	9	Unmodified	_GKPQGTVAR_					0	0	0		ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000403509.1_1_6:54467537-54467825:-|nuORF;ENST00000491035.5_1_X:153628724-153629192:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.26434326171875	2	457.264333	912.514114	0.094187	4.3068E-05	0.14049	6.4242E-05	0.23468	0.00010731	457.2642918314604	73.069	2.092	73.069	72.639	74.731	0					160	73	4	0	0	0	0.30064	1	18753	18753		8.7454	0.15213	1	2003800			11053	4761	6260	6260	14220	14220					0.054357228488470355
GKPQRNVA	8	Unmodified	_GKPQRNVA_					0	0	0			REV__ENST00000294161.10_1_11:62502867-62503053:+|nuORF	REV__ENST00000294161.10_1_11:62502867-62503053:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.25103759765625	2	435.251226	868.487899	-0.13187	-5.7398E-05	-0.032972	-1.4351E-05	-0.16484	-7.1749E-05	435.25105337760704	69.122	2.4265	69.122	67.783	70.209	0					208	88	3	0	0	0	0.45307	1	17620	17620		4.756	0	1	1167900	+		11054	19772	6261	6261	14221	14221					0.048394536773685104
GKPSHLRG	8	Unmodified	_GKPSHLRG_					0	0	0		ENSG00000198003|ENST00000356392|ODAD3	ENSG00000198003|ENST00000356392|ODAD3	ENSG00000198003|ENST00000356392|ODAD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.7523498535156	2	426.245944	850.477334	0.21728	9.2614E-05	0.10488	4.4707E-05	0.32216	0.00013732	426.24597925040223	77.39	1.7821	77.39	76.833	78.615	0					170	66	5	0	0	0	0.34294	1	20217	20217		7.2892	2.0586	1	7403000			11055	8024	6262	6262	14222	14222					0.046114710229517186
GKPTLQLKLQ	10	Unmodified	_GKPTLQLKLQ_					0	0	0		ENSG00000136696|ENST00000259213|IL36B	ENSG00000136696|ENST00000259213|IL36B	ENSG00000136696|ENST00000259213|IL36B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.35205078125	2	563.353148	1124.69174	0.47294	0.00026643	-2.3464	-0.0013218	-1.8734	-0.0010554	563.351358300846	85.668	0.96325	85.668	85.39	86.354	0					94	34	3	0	0	0	0.38773	2	22478	22478;22595		5.7319	1.7875	1	722760			11056	3989	6263	6263	14223;14224	14223					0.13438553328182934
GKRKRFKFWRK	11	Unmodified	_GKRKRFKFWRK_					0	0	0			REV__nc|ENSG00000164542|Q8NCT3|MATCAP2	REV__nc|ENSG00000164542|Q8NCT3|MATCAP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9854125976562	3	512.984395	1535.93135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.65	1	93.737	93.237	94.237	0.08667								0	0	0	0.38222	1	24949	24949		0.094841	0.011491	1		+		11057	23065	6264	6264	14225	14225					0.18482592789860064
GKRRWNFEQI	10	Unmodified	_GKRRWNFEQI_					0	0	0		ENSG00000182173|ENST00000333213|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.6358642578125	3	445.242311	1332.7051	0.30315	0.00013498	2.924	0.0013019	3.2272	0.0014369	445.57767688980005	34.191	0.50574	34.191	33.94	34.446	0					37	17	3	0	0	0	0.32034	1	6722	6722		1.2148	0	1	189470			11058	7275	6265	6265	14226	14226					0.0520580416014127
GKRSIDEEKL	10	Unmodified	_GKRSIDEEKL_					0	0	0			REV__nc|ENSG00000117640|Q9H019-3|MTFR1L	REV__nc|ENSG00000117640|Q9H019-3|MTFR1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8262329101562	2	587.824952	1173.63535	0.303	0.00017811	1.4233	0.00083663	1.7263	0.0010147	587.825761290037	20	0.37377	20	19.739	20.113	0					24	13	3	0	0	0	0.41168	1	2434	2434		1.3295	0.72803	1	86613	+		11059	14985	6266	6266	14227	14227					0.055478807008285
GKSAPPTFF	9	Unmodified	_GKSAPPTFF_					0	0	0			REV__ENSG00000164944|ENST00000297591|VIRMA	REV__ENSG00000164944|ENST00000297591|VIRMA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.2490234375	2	476.25036	950.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.242	1	80.215	79.715	80.715	-0.026825								0	0	0	0.24715	1	20830	20830		7.2892	1.5288	1		+		11060	17193	6267	6267	14228	14228					0.00894399868752771
GKSKKRSSL	9	Unmodified	_GKSKKRSSL_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.80645751953125	2	495.806365	989.598178	0.18479	9.1621E-05	0.21694	0.00010756	0.40173	0.00019918	495.80628340124065	80.847	0.91844	80.912	80.628	81.547	0.065094					117	43	5	0	0	0	0.33508	1	21097	21097		3.5965	3.5965	1	623690			11061	8556	6268	6268	14229	14229					0.10296253945750777
GKSKKRSSL	9	Unmodified	_GKSKKRSSL_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.8088073730469	2	495.806365	989.598178	0.36375	0.00018035	0.065148	3.2301E-05	0.4289	0.00021265	495.806145653808	80.862	1.1427	80.835	80.597	81.74	-0.026825					136	48	4	0	0	0	0.33508	1	21163	21163		3.5965	3.5965	1	738180			11062	8556	6268	6268	14230	14230					0.10296253945750777
GKSPRPSPI	9	Unmodified	_GKSPRPSPI_					0	0	0			REV__nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	REV__nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.25311279296875	2	469.774534	937.534515	0.62532	0.00029376	-0.33327	-0.00015656	0.29206	0.0001372	469.7746002923893	33.637	0.44368	33.704	33.596	34.04	0.06636					18	15	2	0	0	0	0.24311	1	6599	6599		7.2892	0	1	73354	+		11063	13962	6269	6269	14231	14231					0.06324893508644891
GKSRSRMR	8	Unmodified	_GKSRSRMR_					0	0	0			REV__ENST00000605123.1_1_5:154872251-154872623:+|nuORF	REV__ENST00000605123.1_1_5:154872251-154872623:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.8004150390625	2	489.274709	976.534866	0.25929	0.00012687	-1.055	-0.00051618	-0.7957	-0.00038932	489.2740693955722	31.157	0.45814	31.198	30.988	31.447	0.040991					35	16	3	0	0	0	0.34337	1	5723	5723		5.2307	0.90143	1	271500	+		11064	15927	6270	6270	14232	14232					0.04565989956870453
GKSSLQLPRPR	11	Unmodified	_GKSSLQLPRPR_					0	0	0		nc|ENSG00000063015|Q53EL9-2|SEZ6;nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8692626953125	2	619.870028	1237.7255	-0.13349	-8.2747E-05	-0.4876	-0.00030225	-0.62109	-0.00038499	619.8694468301202	98.928	0.23272	98.928	98.867	99.1	0					38	27	2	0	0	0	0.47649	1	26497	26497		1.1933	0.66858	1	105560			11065	769	6271	6271	14233	14233					0.11614974819894996
GKSSLQLPRPR	11	Unmodified	_GKSSLQLPRPR_					0	0	0		nc|ENSG00000063015|Q53EL9-2|SEZ6;nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8697509765625	2	619.870028	1237.7255	-0.088289	-5.4728E-05	-0.50004	-0.00030996	-0.58833	-0.00036469	619.8695493161014	98.702	0.26673	98.753	98.549	98.815	0.050896					45	32	2	0	0	0	0.46277	2	26393	26393;26428		2.9952	1.3426	1	122850			11066	769	6271	6271	14234;14235	14234					0.11614974819894996
GKSSLQLPRPR	11	Unmodified	_GKSSLQLPRPR_					0	0	0		nc|ENSG00000063015|Q53EL9-2|SEZ6;nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8689575195312	2	619.870028	1237.7255	-0.096302	-5.9695E-05	-0.27028	-0.00016754	-0.36658	-0.00022723	620.3715340514722	98.896	0.196	98.947	98.815	99.011	0.050888					35	25	2	0	0	0	0.47649	1	26452	26452		1.1933	0	1	142640			11067	769	6271	6271	14236	14236					0.11614974819894996
GKSSLQLPRPR	11	Unmodified	_GKSSLQLPRPR_					0	0	0		nc|ENSG00000063015|Q53EL9-2|SEZ6;nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8692626953125	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.4	1	101.43	100.93	101.93	0.027206								0	0	0	0.37501	1	27044	27044		2.7352	0.89096	1				11068	769	6271	6271	14237	14237					0.11614974819894996
GKTERDLPF	9	Unmodified	_GKTERDLPF_					0	0	0			REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7952270507812	2	531.782556	1061.55056	0.33426	0.00017775	-0.89971	-0.00047845	-0.56546	-0.0003007	531.7819767897213	22.484	1.1503	22.484	21.819	22.969	0					88	40	3	0	0	0	0.30623	1	3128	3128		7.9102	1.7044	1	382010	+		11069	15755	6272	6272	14238	14238					0.022245549548870258
GKTERDLPF	9	Unmodified	_GKTERDLPF_					0	0	0			REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7952270507812	2	531.782556	1061.55056	0.29636	0.0001576	-0.90129	-0.00047929	-0.60493	-0.00032169	531.7819980583292	22.654	1.1078	22.61	21.977	23.084	-0.044867					96	38	3	0	0	0	0.31417	1	3167	3167		6.7232	2.3939	1	400620	+		11070	15755	6272	6272	14239	14239					0.022245549548870258
GKTERDLPF	9	Unmodified	_GKTERDLPF_					0	0	0			REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	531.782556	1061.55056	0.20927	0.00011128	-0.68021	-0.00036172	-0.47094	-0.00025044	531.7820732595738	22.635	1.0629	22.548	21.93	22.993	-0.087608	0.000838	0.0001525	NaN	7.9102	92	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428360	+		11071	15755	6272	6272							0.022245549548870258
GKTFYHKSVLT	11	Unmodified	_GKTFYHKSVLT_					0	0	0		ENSG00000196693|ENST00000359467|ZNF33B	ENSG00000196693|ENST00000359467|ZNF33B	ENSG00000196693|ENST00000359467|ZNF33B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.8544311523438	2	640.853512	1279.69247	0.62013	0.00039741	1.0549	0.00067607	1.6751	0.0010735	640.854164233227	59.185	0.59677	59.17	58.86	59.456	-0.014267					47	20	4	0	0	0	0.32017	1	14413	14413		20.415	20.415	1	482300			11072	7895	6273	6273	14240	14240					0.06381347977230689
GKTLLLVQQ	9	Unmodified	_GKTLLLVQQ_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7691345214844	2	500.313492	998.612431	0.32468	0.00016244	0.68262	0.00034152	1.0073	0.00050397	500.3136812020004	49.415	0.22205	49.46	49.293	49.515	0.044891					9	7	2	0	0	0	0.25779	1	11385	11385		3.2813	0	1	78271			11073	1044	6274	6274	14241	14241					0.11306906374045411
GKTLLLVQQ	9	Unmodified	_GKTLLLVQQ_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	500.313492	998.612431	0.51187	0.00025609	0.60032	0.00030035	1.1122	0.00055644	500.31372728343433	49.307	0.2177	49.307	49.19	49.408	0	-0.076504	-3.3738E-05	NaN	1.3295	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69537			11074	1044	6274	6274							0.11306906374045411
GKVFMQEFKE	10	Unmodified	_GKVFMQEFKE_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8957824707031	3	414.877758	1241.61144	0.35299	0.00014645	2.0333	0.00084355	2.3862	0.00099	414.8786597422057	45.058	0.40258	45.133	45.016	45.418	0.075047					20	14	2	0	0	0	0.31515	1	10011	10011		4.7159	1.1289	1	110520			11075	5682	6275	6275	14242	14242					0.0003032394283764006
GLAAVWWD	8	Unmodified	_GLAAVWWD_					0	0	0		ENSG00000161677|ENST00000598418|JOSD2	ENSG00000161677|ENST00000598418|JOSD2	ENSG00000161677|ENST00000598418|JOSD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.77587890625	2	459.229428	916.444303	-0.22697	-0.00010423	0.51844	0.00023808	0.29148	0.00013386	459.2294783406909	14.944	0.75715	14.944	14.561	15.319	0					40	26	2	0	0	0	0.33995	1	888	888		15.768	3.2367	1	149940			11076	5525	6276	6276	14243	14243					-0.017261558197674276
GLAAVWWD	8	Unmodified	_GLAAVWWD_					0	0	0		ENSG00000161677|ENST00000598418|JOSD2	ENSG00000161677|ENST00000598418|JOSD2	ENSG00000161677|ENST00000598418|JOSD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.77587890625	2	459.229428	916.444303	-0.12496	-5.7387E-05	0.52078	0.00023916	0.39582	0.00018177	459.22951734604794	14.986	0.79301	14.877	14.587	15.38	-0.10981					47	27	2	0	0	0	0.33995	1	959	959		15.768	6.4208	1	162240			11077	5525	6276	6276	14244	14244					-0.017261558197674276
GLAAVWWD	8	Unmodified	_GLAAVWWD_					0	0	0		ENSG00000161677|ENST00000598418|JOSD2	ENSG00000161677|ENST00000598418|JOSD2	ENSG00000161677|ENST00000598418|JOSD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7757873535156	2	459.229428	916.444303	-0.13391	-6.1494E-05	0.042199	1.9379E-05	-0.091707	-4.2115E-05	459.2294188996919	15.099	0.77341	15.034	14.618	15.391	-0.064413					48	26	3	0	0	0	0.33995	1	979	979		15.768	7.1749	1	187470			11078	5525	6276	6276	14245	14245					-0.017261558197674276
GLACIISDL	9	Unmodified	_GLACIISDL_					0	0	0			REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF	REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.23004150390625	2	452.744053	903.473554	-0.0082941	-3.7551E-06	1.1443	0.00051806	1.136	0.00051431	452.7443569220793	18.985	0.21967	18.868	18.784	19.004	-0.11739					10	7	2	0	0	0	0.21137	1	2090	2090		24.674	3.8027	1	29837	+		11079	14176	6277	6277	14246	14246					0.017956204142024035
GLAFVKLLM	9	Unmodified	_GLAFVKLLM_					0	0	0			REV__ENST00000535009.5_1_11:68816453-68846494:+|nuORF	REV__ENST00000535009.5_1_11:68816453-68846494:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.30462646484375	2	496.304081	990.59361	0.46381	0.00023019	-0.023995	-1.1909E-05	0.43982	0.00021828	496.3039549797635	72.194	1.7048	72.167	71.506	73.211	-0.027275					173	60	3	0	0	0	0.32415	1	18450	18450		5.2307	0	1	1114600	+		11080	16972	6278	6278	14247	14247					0.09793653478629949
GLAGALFVW	9	Unmodified	_GLAGALFVW_					0	0	0		ENSG00000118804|ENST00000237642|STBD1	ENSG00000118804|ENST00000237642|STBD1	ENSG00000118804|ENST00000237642|STBD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.5238952636719	2	467.263271	932.511988	0.04203	1.9639E-05	-0.66432	-0.00031041	-0.62229	-0.00029077	467.26293231726225	29.313	0.37049	29.327	29.166	29.536	0.013474					18	12	2	0	0	0	0.24542	1	5185	5185		14.582	2.341	1	119710			11081	2844	6279	6279	14248	14248					0.043032941110254797
GLAGPSWLITV	11	Unmodified	_GLAGPSWLITV_					0	0	0			REV__ENST00000469841.5_1_3:57131519-57204269:-|nuORF	REV__ENST00000469841.5_1_3:57131519-57204269:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.309814453125	2	557.318774	1112.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.116	1	59.116	58.616	59.616	0								0	0	0	0.20529	1	14374	14374		32.786	3.7041	1		+		11082	16256	6280	6280	14249	14249					0.07118889028447484
GLAHIENLQ	9	Unmodified	_GLAHIENLQ_					0	0	0			REV__nc|ENSG00000204396|Q9Y334-2|VWA7	REV__nc|ENSG00000204396|Q9Y334-2|VWA7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.76959228515625	2	497.769448	993.524344	0.248	0.00012345	0.19104	9.5094E-05	0.43904	0.00021854	497.7694643223245	19.612	0.66566	19.612	19.211	19.877	0					49	23	3	0	0	0	0.33018	1	2284	2284		4.3292	0.38484	1	75137	+		11083	18940	6281	6281	14250	14250					0.027322857834292336
GLAHPSHL	8	Unmodified	_GLAHPSHL_					0	0	0		ENST00000543035.5_2_12:3069048-3103988:+|nuORF;ENST00000397122.6_1_12:3069090-3126574:+|nuORF	ENST00000543035.5_2_12:3069048-3103988:+|nuORF	ENST00000543035.5_2_12:3069048-3103988:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.215576171875	2	416.22722	830.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.303	1	22.203	21.703	22.703	-0.10034								0	0	0	0.35779	1	3107	3107		11.114	0.93107	1				11084	10133	6282	6282	14251	14251					0.017883797573290394
GLAILWYV	8	Unmodified	_GLAILWYV_					0	0	0		ENST00000564047.1_1_16:89590622-89596095:+|nuORF;nc|ENSG00000197912|Q9UQ90-2|SPG7;SPG7|p.S560Efs*16|1|0.21|ENSG00000197912|chr16:89550501-89550502|-/A|frameshift_variant;SPG7|p.E567Nfs*25|1|0.31|ENSG00000197912|chr16:89550527-89550527|A/-|frameshift_variant;ENSG00000197912|ENST00000645818|SPG7	ENST00000564047.1_1_16:89590622-89596095:+|nuORF	ENST00000564047.1_1_16:89590622-89596095:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2522888183594	2	467.773471	933.53239	-0.2306	-0.00010787	-1.1809	-0.00055237	-1.4115	-0.00066024	467.77289074788155	14.496	0.43575	14.391	14.105	14.54	-0.10466					18	14	2	0	0	0	0.34147	1	721	721		11.114	1.767	1	54215			11085	8014	6283	6283	14252	14252					0.06296464770844068
GLAIYNSTV	9	Unmodified	_GLAIYNSTV_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2393493652344	2	469.2531	936.491647	-0.18953	-8.8939E-05	-0.87424	-0.00041024	-1.0638	-0.00049918	469.25254738782394	25.343	0.81764	25.312	24.833	25.65	-0.031408					69	28	4	0	0	0	0.29176	1	4073	4073		10.074	0	1	667560			11086	4171	6284	6284	14253	14253					0.020860786605680914
GLAKKVGPLS	10	Unmodified	_GLAKKVGPLS_					0	0	0			REV__ENSG00000114942|ENST00000392222|EEF1B2	REV__ENSG00000114942|ENST00000392222|EEF1B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8004150390625	2	485.30821	968.601866	0.18714	9.0819E-05	0.1512	7.3377E-05	0.33833	0.0001642	485.3082263202615	59.216	0.79725	59.216	58.682	59.479	0					48	27	2	0	0	0	0.2811	1	14473	14473		22.736	2.2827	1	195220	+		11087	14856	6285	6285	14254	14254					0.11630923719621933
GLAKKVGPLS	10	Unmodified	_GLAKKVGPLS_					0	0	0			REV__ENSG00000114942|ENST00000392222|EEF1B2	REV__ENSG00000114942|ENST00000392222|EEF1B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002624511719	2	485.30821	968.601866	0.39715	0.00019274	-0.086343	-4.1903E-05	0.3108	0.00015084	485.3080810004492	59.251	0.83088	59.237	58.684	59.515	-0.014267					49	28	2	0	0	0	0.2811	1	14476	14476		22.736	5.794	1	218820	+		11088	14856	6285	6285	14255	14255					0.11630923719621933
GLALPSRVQ	9	Unmodified	_GLALPSRVQ_					0	0	0		nc|ENSG00000230246|P0DKV0-2|SPATA31C1;nc|ENSG00000177910|B4DYI2|SPATA31C2;nc|ENSG00000230246|P0DKV0|SPATA31C1	nc|ENSG00000230246|P0DKV0-2|SPATA31C1	nc|ENSG00000230246|P0DKV0-2|SPATA31C1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.7948913574219	2	470.782359	939.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.284	1	41.375	40.875	41.875	0.090252								0	0	0	0.22457	1	8885	8885		14.582	1.0738	1				11089	12857	6286	6286	14256	14256					0.07797180025715988
GLALPSRVQ	9	Unmodified	_GLALPSRVQ_					0	0	0		nc|ENSG00000230246|P0DKV0-2|SPATA31C1;nc|ENSG00000177910|B4DYI2|SPATA31C2;nc|ENSG00000230246|P0DKV0|SPATA31C1	nc|ENSG00000230246|P0DKV0-2|SPATA31C1	nc|ENSG00000230246|P0DKV0-2|SPATA31C1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.79486083984375	2	470.782359	939.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.212	1	41.308	40.808	41.808	0.096626								0	0	0	0.20238	1	8854	8854		21.747	3.6117	1				11090	12857	6286	6286	14257	14257					0.07797180025715988
GLAPAHPRP	9	Unmodified	_GLAPAHPRP_					0	0	0			REV__ENST00000486360.1_1_1:203045208-203045709:+|nuORF	REV__ENST00000486360.1_1_1:203045208-203045709:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2790832519531	2	458.261594	914.508634	0.29695	0.00013608	-1.7151	-0.00078599	-1.4182	-0.0006499	458.26071215613916	29.259	0.43176	29.259	29.089	29.521	0					24	15	2	0	0	0	0.18943	1	5242	5242		30.225	10.786	1	179290	+		11091	21550	6287	6287	14258	14258					0.04796044057036397
GLAPGPGELK	10	Unmodified	_GLAPGPGELK_					0	0	0			REV__nc|ENSG00000039600|O94993-2|SOX30	REV__nc|ENSG00000039600|O94993-2|SOX30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.284912109375	2	469.768917	937.523281	-0.1295	-6.0834E-05	0.61713	0.00028991	0.48763	0.00022907	469.76904955918627	23.408	0.53632	23.408	23.197	23.734	0					37	18	3	0	0	0	0.21126	1	3461	3461		31.268	7.2478	1	142730	+		11092	13524	6288	6288	14259	14259					0.0520207141452147
GLAPGPGELK	10	Unmodified	_GLAPGPGELK_					0	0	0			REV__nc|ENSG00000039600|O94993-2|SOX30	REV__nc|ENSG00000039600|O94993-2|SOX30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2846984863281	2	469.768917	937.523281	-0.0071723	-3.3693E-06	0.40983	0.00019252	0.40266	0.00018915	469.7689812728628	23.522	0.61137	23.449	23.18	23.791	-0.072559					40	21	3	0	0	0	0.19885	1	3498	3498		32.786	8.7651	1	179300	+		11093	13524	6288	6288	14260	14260					0.0520207141452147
GLAPGPGELK	10	Unmodified	_GLAPGPGELK_					0	0	0			REV__nc|ENSG00000039600|O94993-2|SOX30	REV__nc|ENSG00000039600|O94993-2|SOX30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2848205566406	2	469.768917	937.523281	0.24148	0.00011344	-0.0094145	-4.4226E-06	0.23207	0.00010902	469.76879890242077	23.479	0.6454	23.44	23.202	23.848	-0.038927					46	22	3	0	0	0	0.26265	1	3498	3498		24.991	6.8446	1	159240	+		11094	13524	6288	6288	14261	14261					0.0520207141452147
GLAPGPGELK	10	Unmodified	_GLAPGPGELK_					0	0	0			REV__nc|ENSG00000039600|O94993-2|SOX30	REV__nc|ENSG00000039600|O94993-2|SOX30	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	469.768917	937.523281	-0.1295	-6.0834E-05	0.61713	0.00028991	0.48763	0.00022907	469.76904955918627	23.408	0.53632	23.408	23.197	23.734	0	-0.024644	0.00028177	NaN	32.786	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142730	+		11095	13524	6288	6288							0.0520207141452147
GLAPGPGELK	10	Unmodified	_GLAPGPGELK_					0	0	0			REV__nc|ENSG00000039600|O94993-2|SOX30	REV__nc|ENSG00000039600|O94993-2|SOX30	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	469.768917	937.523281	-0.0071723	-3.3693E-06	0.40983	0.00019252	0.40266	0.00018915	469.7689812728628	23.522	0.61137	23.449	23.18	23.791	-0.072559	0.016756	8.7E-05	NaN	32.786	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179300	+		11096	13524	6288	6288							0.0520207141452147
GLAPGPGELK	10	Unmodified	_GLAPGPGELK_					0	0	0			REV__nc|ENSG00000039600|O94993-2|SOX30	REV__nc|ENSG00000039600|O94993-2|SOX30	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	469.768917	937.523281	0.24148	0.00011344	-0.0094145	-4.4226E-06	0.23207	0.00010902	469.76879890242077	23.479	0.6454	23.44	23.202	23.848	-0.038927	0.0078879	-0.00030689	NaN	32.786	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159240	+		11097	13524	6288	6288							0.0520207141452147
GLAPNEHHLHC	11	Unmodified	_GLAPNEHHLHC_					0	0	0			REV__ENSG00000124313|ENST00000642864|IQSEC2	REV__ENSG00000124313|ENST00000642864|IQSEC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5698547363281	3	409.861101	1226.56147	-0.18004	-7.3792E-05	2.2105	0.00090602	2.0305	0.00083222	409.8619682820771	25.494	0.31091	25.438	25.281	25.592	-0.055931					18	10	2	0	0	0	0.33219	1	4112	4112		0.50596	0	1	74452	+		11098	15229	6289	6289	14262	14262					-0.042743659424559155
GLAQLILQLER	11	Unmodified	_GLAQLILQLER_					0	0	0			REV__ENSG00000059691|ENST00000263985|GATB	REV__ENSG00000059691|ENST00000263985|GATB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5784606933594	3	418.590717	1252.75032	0.17318	7.2493E-05	0.42619	0.0001784	0.59938	0.00025089	418.5910105224322	23.597	0.11543	23.558	23.476	23.592	-0.038927					5	3	2	0	0	0	0.33238	1	3495	3495		1.3296	0	1	16125	+		11099	13616	6290	6290	14263	14263					0.13405609902633842
GLAQVTLAPK	10	Unmodified	_GLAQVTLAPK_					0	0	0			REV__ENST00000477184.5_1_7:102123509-102123833:-|nuORF	REV__ENST00000477184.5_1_7:102123509-102123833:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.3057861328125	2	499.305667	996.596781	0.51294	0.00025612	-0.29508	-0.00014733	0.21787	0.00010878	499.3054095808235	38.921	0.68872	39.02	38.735	39.424	0.099407					43	24	2	0	0	0	0.33817	1	8178	8178		14.838	0	1	1049500	+		11100	21433	6291	6291	14264	14264					0.09834619856997051
GLASFKSFLK	10	Unmodified	_GLASFKSFLK_					0	0	0		nc|ENSG00000143248|O15539-3|RGS5;ENSG00000143248|ENST00000313961|RGS5	nc|ENSG00000143248|O15539-3|RGS5	nc|ENSG00000143248|O15539-3|RGS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3214111328125	2	549.321317	1096.62808	0.29506	0.00016208	0.63449	0.00034854	0.92955	0.00051062	549.3213101358382	51.839	0.66961	51.838	51.576	52.246	-0.00081253					72	24	4	0	0	0	0.092344	1	12129	12129		49.742	20.66	1	1090000			11101	4493	6292	6292	14265	14265					0.08363192891079052
GLASFKSFLK	10	Unmodified	_GLASFKSFLK_					0	0	0		nc|ENSG00000143248|O15539-3|RGS5;ENSG00000143248|ENST00000313961|RGS5	nc|ENSG00000143248|O15539-3|RGS5	nc|ENSG00000143248|O15539-3|RGS5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	549.321317	1096.62808	0.42269	0.0002322	-0.083791	-4.6028E-05	0.3389	0.00018617	549.3212268700389	51.69	0.61729	51.69	51.481	52.098	0	-0.045016	-0.00024712	NaN	49.742	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	930270			11102	4493	6292	6292							0.08363192891079052
GLASFKSFLK	10	Unmodified	_GLASFKSFLK_					0	0	0		nc|ENSG00000143248|O15539-3|RGS5;ENSG00000143248|ENST00000313961|RGS5	nc|ENSG00000143248|O15539-3|RGS5	nc|ENSG00000143248|O15539-3|RGS5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	549.321317	1096.62808	0.49141	0.00026994	-0.13245	-7.2759E-05	0.35896	0.00019718	549.3211696873188	51.631	0.68579	51.678	51.454	52.14	0.046574	-0.057595	-0.00030058	NaN	49.742	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	959510			11103	4493	6292	6292							0.08363192891079052
GLCVCIVAVLR	11	Unmodified	_GLCVCIVAVLR_					0	0	0		MED12L|p.Q2074Sfs*63|1|0.33|ENSG00000144893|chr3:151416336-151416336|C/-|frameshift_variant;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	MED12L|p.Q2074Sfs*63|1|0.33|ENSG00000144893|chr3:151416336-151416336|C/-|frameshift_variant	MED12L|p.Q2074Sfs*63|1|0.33|ENSG00000144893|chr3:151416336-151416336|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.3508911132812	2	573.330304	1144.64606	0.22117	0.0001268	-1.1429	-0.00065523	-0.92168	-0.00052843	573.3296512906232	43.007	0.46532	43.007	42.816	43.281	0					36	16	3	0	0	0	0.36257	1	9391	9391		16.149	2.2431	1	711250			11104	12524	6293	6293	14266	14266					0.07951868549912433
GLDFHYMCYTL	11	Unmodified	_GLDFHYMCYTL_					0	0	0			REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17	REV__nc|ENSG00000104946|Q9HA65-3|TBC1D17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2628173828125	3	454.866753	1361.57843	-0.14648	-6.6629E-05	-0.59045	-0.00026858	-0.73693	-0.0003352	454.86630707741443	28.022	0.34143	28.018	27.851	28.193	-0.0042572					16	11	2	0	0	0	0.33064	1	4832	4832		5.0475	1.1712	1	59165	+		11105	14430	6294	6294	14267	14267					-0.0878962617155139
GLDGSFPAVI	10	Unmodified	_GLDGSFPAVI_					0	0	0		nc|ENSG00000105784|Q96NL0-4|RUNDC3B;ENSG00000105784|ENST00000394654|RUNDC3B;nc|ENSG00000105784|Q96NL0|RUNDC3B;nc|ENSG00000105784|Q96NL0-2|RUNDC3B	nc|ENSG00000105784|Q96NL0-4|RUNDC3B	nc|ENSG00000105784|Q96NL0-4|RUNDC3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7909240722656	2	488.260925	974.507297	0.18687	9.1243E-05	-0.076799	-3.7498E-05	0.11007	5.3745E-05	488.2607884440647	76.112	0.45776	76.166	75.862	76.32	0.053413					26	15	2	0	0	0	0.29519	1	19544	19544		10.824	0	1	256580			11106	2024	6295	6295	14268	14268					0.01902365177613774
GLDLDLDLDL	10	Unmodified	_GLDLDLDLDL_					0	0	0		ENST00000362042.7_1_17:46137022-46137280:+|nuORF	ENST00000362042.7_1_17:46137022-46137280:+|nuORF	ENST00000362042.7_1_17:46137022-46137280:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7737426757812	2	551.287337	1100.56012	-1.2175	-0.00067121	0.078751	4.3415E-05	-1.1388	-0.00062779	551.2869117705824	34.713	0.5205	34.789	34.522	35.043	0.075306					23	18	2	0	0	0	0.31926	1	6944	6944		5.7319	0	1	136960			11107	9705	6296	6296	14269	14269					0.013862784497632674
GLDLLKLCLHF	11	Unmodified	_GLDLLKLCLHF_					0	0	0		ENST00000468628.2_1_3:43384881-43403307:+|nuORF	ENST00000468628.2_1_3:43384881-43403307:+|nuORF	ENST00000468628.2_1_3:43384881-43403307:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.57135009765625	3	424.577531	1270.71076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.057	1	44.134	43.634	44.634	0.077515								0	0	0	0.34766	1	9730	9730		4.4062	0	1				11108	10840	6297	6297	14270	14270					0.08623766627556506
GLDSFRRTL	9	Unmodified	_GLDSFRRTL_					0	0	0			REV__ENSG00000138794|ENST00000265164|CASP6	REV__ENSG00000138794|ENST00000265164|CASP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7963256835938	2	532.795998	1063.57744	0.32375	0.00017249	0.30238	0.00016111	0.62613	0.0003336	532.796038640626	28.963	0.71043	28.976	28.619	29.329	0.013475					63	25	3	0	0	0	0.13748	1	5119	5119		32.786	2.1491	1	799710	+		11109	15958	6298	6298	14271	14271					0.048196635660815446
GLDVVIKV	8	Unmodified	_GLDVVIKV_					0	0	0			REV__ENSG00000174946|ENST00000309180|GPR171	REV__ENSG00000174946|ENST00000309180|GPR171	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.2289733886719	2	421.770929	841.527304	0.27328	0.00011526	-0.16007	-6.7511E-05	0.11322	4.7751E-05	421.77074582754005	54.468	0.67183	54.531	54.218	54.89	0.063202					71	24	4	0	0	0	0.2564	1	12874	12874		32.305	0	1	3344300	+		11110	17863	6299	6299	14272	14272					0.10020160908231901
GLEAAALLL	9	Unmodified	_GLEAAALLL_					0	0	0		ENST00000512660.1_1_5:176936187-176936779:-|nuORF;ENST00000502380.1_1_5:176936187-176937359:-|nuORF;nc|ENSG00000146094|Q7L591|DOK3	ENST00000512660.1_1_5:176936187-176936779:-|nuORF	ENST00000512660.1_1_5:176936187-176936779:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.7682189941406	2	435.768386	869.522219	-0.21861	-9.5263E-05	-0.31663	-0.00013798	-0.53524	-0.00023324	435.7681377756292	66.955	0.57924	66.941	66.634	67.213	-0.013588					52	20	3	0	0	0	0.155	1	16776	16776		30.225	0	1	1166800			11111	11273	6300	6300	14273	14273					0.08223857045607019
GLEEKKHA	8	Unmodified	_GLEEKKHA_					0	0	0		ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.26922607421875	2	456.250892	910.48723	0.303	0.00013824	-2.9876	-0.0013631	-2.6847	-0.0012249	456.2506469159706	40.575	1.2242	40.667	39.994	41.218	0.092674					112	44	5	0	0	0	0.34131	1	8507	8507		12.532	5.2423	1	313300			11112	2246	6301	6301	14274	14274					0.028406142376638854
GLEEKKHA	8	Unmodified	_GLEEKKHA_					0	0	0		ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	456.250892	910.48723	0.13273	6.0558E-05	-1.9542	-0.00089162	-1.8215	-0.00083106	456.25077192834254	40.782	0.94266	40.782	40.283	41.225	0	0.057335	0.00049661	NaN	12.532	96	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383330			11113	2246	6301	6301							0.028406142376638854
GLEHYDTSTHS	11	Unmodified	_GLEHYDTSTHS_					0	0	0			REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.1828918457031	3	416.182675	1245.52619	-0.078214	-3.2551E-05	0.30073	0.00012516	0.22251	9.2606E-05	416.1829206189105	24.95	1.1077	24.95	24.575	25.683	0					124	37	5	0	0	0	0.44966	1	3916	3916		4.7159	1.1289	1	901240	+		11114	14854	6302	6302	14275	14275					-0.08674749989290831
GLEHYDTSTHS	11	Unmodified	_GLEHYDTSTHS_					0	0	0			REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.18292236328125	3	416.182675	1245.52619	0.068674	2.8581E-05	0.2041	8.4941E-05	0.27277	0.00011352	416.18287998953025	25.033	1.1318	24.977	24.572	25.704	-0.055931					126	39	5	0	0	0	0.44966	1	3953	3953		4.7159	0.87001	1	978570	+		11115	14854	6302	6302	14276	14276					-0.08674749989290831
GLEMRIKL	8	Unmodified	_GLEMRIKL_					0	0	0		ENSG00000150667|ENST00000350221|FSIP1	ENSG00000150667|ENST00000350221|FSIP1	ENSG00000150667|ENST00000350221|FSIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7637634277344	2	480.288963	958.563372	0.49308	0.00023682	4.3397	0.0020843	4.8328	0.0023211	480.29073609549795	48.045	0.21093	48.088	47.957	48.168	0.04332					9	7	2	0	0	0	0.32778	1	10947	10947		14.582	0	1	173540			11116	4920	6303	6303	14277	14277					0.08243294813439661
GLEVVGRVQ	9	Unmodified	_GLEVVGRVQ_					0	0	0		nc|ENSG00000111664|P16520-2|GNB3;ENSG00000111664|ENST00000229264|GNB3	nc|ENSG00000111664|P16520-2|GNB3	nc|ENSG00000111664|P16520-2|GNB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7928771972656	2	478.779816	955.545079	-0.11938	-5.7157E-05	0.30275	0.00014495	0.18337	8.7793E-05	478.77994758669627	42.535	0.98183	42.535	42.251	43.233	0					99	35	4	0	0	0	0.12642	1	9473	9473		34.402	5.3201	1	6561400			11117	2376	6304	6304	14278	14278					0.06552876163095789
GLFDFLKEML	10	Unmodified	_GLFDFLKEML_					0	0	0			REV__ENST00000437318.5_1_15:20588586-20648641:-|nuORF	REV__ENST00000437318.5_1_15:20588586-20648641:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2243957519531	3	404.88262	1211.62603	-0.11732	-4.7499E-05	0.89973	0.00036429	0.78242	0.00031679	404.8829747636102	17.112	0.87992	17.112	16.689	17.568	0					84	30	4	0	0	0	0.37587	1	1642	1642		4.1895	0.60244	1	168320	+		11118	20920	6305	6305	14279	14279					0.028683960909575035
GLFDRGVQML	10	Unmodified	_GLFDRGVQML_					0	0	0		ENSG00000166862|ENST00000300105|CACNG2	ENSG00000166862|ENST00000300105|CACNG2	ENSG00000166862|ENST00000300105|CACNG2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.3102416992188	2	568.300059	1134.58556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.197	1	55.197	54.697	55.697	0								0	0	0	0.34994	1	13163	13163		14.838	1.3304	1				11119	6123	6306	6306	14280	14280					0.02365474491216446
GLFFVPVVEEW	11	Unmodified	_GLFFVPVVEEW_					0	0	0		ENSG00000203756|ENST00000368143|TMEM244	ENSG00000203756|ENST00000368143|TMEM244	ENSG00000203756|ENST00000368143|TMEM244	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.9021301269531	3	441.232418	1320.67542	-0.097211	-4.2893E-05	3.5017	0.0015451	3.4045	0.0015022	441.5679934106339	15.513	0.61037	15.403	15.176	15.786	-0.10981					55	20	4	0	0	0	0.33347	1	1155	1155		0.45452	0.1855	1	52869			11120	8186	6307	6307	14281	14281					0.027914273714259252
GLFLLEDQL	9	Unmodified	_GLFLLEDQL_					0	0	0			REV__ENSG00000050344|ENST00000056233|NFE2L3	REV__ENSG00000050344|ENST00000056233|NFE2L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.778564453125	2	524.289682	1046.56481	0.58944	0.00030904	-0.65678	-0.00034434	-0.067334	-3.5303E-05	524.2897113196371	72.409	0.59212	72.409	72.104	72.696	0					31	21	3	0	0	0	0.088391	1	18447	18447		39.957	12.329	1	145500	+		11121	13563	6308	6308	14282	14282					0.04339207383191024
GLFLLEDQL	9	Unmodified	_GLFLLEDQL_					0	0	0			REV__ENSG00000050344|ENST00000056233|NFE2L3	REV__ENSG00000050344|ENST00000056233|NFE2L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.8133544921875	2	524.289682	1046.56481	0.58944	0.00030904	-0.65678	-0.00034434	-0.067334	-3.5303E-05	524.2897113196371	72.409	0.59212	72.409	72.104	72.696	0					31	21	3	0	0	0	0.1524	1	18455	18455		39.957	3.8303	1	145500	+		11122	13563	6308	6308	14283	14283					0.04339207383191024
GLFLPLYLS	9	Unmodified	_GLFLPLYLS_					0	0	0			REV__ENST00000298198.4_1_11:74043464-74043653:-|nuORF	REV__ENST00000298198.4_1_11:74043464-74043653:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2796630859375	2	511.799686	1021.58482	0.25702	0.00013154	2.2452	0.0011491	2.5022	0.0012806	512.3025181983506	63.219	0.7594	63.21	62.804	63.564	-0.0085564					73	27	4	0	0	0	0.21137	1	15684	15684		12.532	3.9383	1	632610	+		11123	19806	6309	6309	14284	14284					0.07489003113801118
GLFQPLLTI	9	Unmodified	_GLFQPLLTI_					0	0	0			REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.29071044921875	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.134	1	78.134	77.634	78.634	0								0	0	0	0.21971	1	20201	20201		16.149	1.3108	1		+		11124	16514	6310	6310	14285	14285					0.09544405488099983
GLFQPLLTI	9	Unmodified	_GLFQPLLTI_					0	0	0			REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2905578613281	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.615	1	78.615	78.115	79.115	0								0	0	0	0.18053	1	20348	20348		27.629	2.2295	1		+		11125	16514	6310	6310	14286	14286					0.09544405488099983
GLFQPLLTI	9	Unmodified	_GLFQPLLTI_					0	0	0			REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	REV__ENST00000422321.5_1_10:22856588-22898637:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.29071044921875	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.215	1	79.276	78.776	79.776	0.061417								0	0	0	0.21971	1	20520	20520		16.149	1.3108	1		+		11126	16514	6310	6310	14287	14287					0.09544405488099983
GLFVKCPI	8	Unmodified	_GLFVKCPI_					0	0	0			REV__ENST00000485335.1_1_2:102640001-102644851:+|nuORF	REV__ENST00000485335.1_1_2:102640001-102644851:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.7463684082031	2	438.754224	875.493896	0.29709	0.00013035	2.7038	0.0011863	3.0009	0.0013167	438.75391588042316	36.838	0.337	36.838	36.787	37.124	0					15	11	2	0	0	0	0.43455	1	7605	7605		11.114	0	1	100500	+		11127	14886	6311	6311	14288	14288					0.05116835864669156
GLGELHFLLL	10	Unmodified	_GLGELHFLLL_					0	0	0		ENST00000600795.1_1_11:77884868-77885513:+|nuORF	ENST00000600795.1_1_11:77884868-77885513:+|nuORF	ENST00000600795.1_1_11:77884868-77885513:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7968139648438	2	556.329142	1110.64373	0.29355	0.00016331	-0.191	-0.00010626	0.10254	5.7048E-05	556.328923665926	39.858	0.43903	39.958	39.762	40.201	0.099407					38	15	3	0	0	0	0.3156	1	8474	8474		10.824	2.2306	1	445430			11128	12251	6312	6312	14289	14289					0.09283479408145467
GLGHVNNVF	9	Unmodified	_GLGHVNNVF_					0	0	0		ENSG00000147488|ENST00000689386|ST18;ENST00000522861.1_1_8:53038570-53045696:-|nuORF	ENSG00000147488|ENST00000689386|ST18	ENSG00000147488|ENST00000689386|ST18	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.73980712890625	2	478.751059	955.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.488	1	78.488	77.988	78.988	0								0	0	0	0.22789	1	20309	20309		13.508	4.1604	1				11129	4769	6313	6313	14290	14290					0.008040339575245525
GLGIYSKLV	9	Unmodified	_GLGIYSKLV_					0	0	0			REV__nc|ENSG00000011021|P51797-6|CLCN6	REV__nc|ENSG00000011021|P51797-6|CLCN6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.73333740234375	2	475.289485	948.564418	0.2783	0.00013227	-0.3472	-0.00016502	-0.068893	-3.2744E-05	475.2894354781856	66.605	0.5476	66.689	66.415	66.963	0.083824					26	19	2	0	0	0	0.24311	1	16659	16659		11.64	0	1	172940	+		11130	13422	6314	6314	14291	14291					0.08807832453987885
GLGLLPRVP	9	Unmodified	_GLGLLPRVP_					0	0	0			REV__ENST00000547632.1_1_12:52309584-52313004:+|nuORF	REV__ENST00000547632.1_1_12:52309584-52313004:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.26226806640625	2	461.297645	920.580737	0.35782	0.00016506	0.21528	9.9309E-05	0.5731	0.00026437	461.2977099306557	54.231	0.96269	54.215	53.833	54.796	-0.015923					50	33	2	0	0	0	0.24739	1	12752	12752		8.5933	2.8329	1	409550	+		11131	22181	6315	6315	14292	14292					0.11726958410736188
GLGLLPRVP	9	Unmodified	_GLGLLPRVP_					0	0	0			REV__ENST00000547632.1_1_12:52309584-52313004:+|nuORF	REV__ENST00000547632.1_1_12:52309584-52313004:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	461.297645	920.580737	0.29274	0.00013504	0.43868	0.00020236	0.73142	0.0003374	461.2978237509443	54.2	1.3479	54.2	53.516	54.864	0	-0.058241	8.3822E-05	NaN	13.508	65	49	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305530	+		11132	22181	6315	6315							0.11726958410736188
GLGLWALN	8	Unmodified	_GLGLWALN_					0	0	0		ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.2384338378906	2	422.239796	842.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.815	1	75.868	75.368	76.368	0.053413								0	0	0	0.34752	1	19488	19488		15.768	4.6538	1				11133	435	6316	6316	14293	14293					0.037504345598904365
GLGPIHGNE	9	Unmodified	_GLGPIHGNE_					0	0	0			REV__ENST00000552121.5_1_12:88429328-88442196:+|nuORF	REV__ENST00000552121.5_1_12:88429328-88442196:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.2636413574219	2	447.227417	892.44028	0.02218	9.9196E-06	-0.079029	-3.5344E-05	-0.056849	-2.5424E-05	447.2272805550822	19.169	1.0548	19.053	18.615	19.67	-0.11592					48	36	2	0	0	0	0.25291	1	2029	2029		9.3474	1.4373	1	163660	+		11134	22214	6317	6317	14294	14294					-0.010242453134651441
GLGPIHGNE	9	Unmodified	_GLGPIHGNE_					0	0	0			REV__ENST00000552121.5_1_12:88429328-88442196:+|nuORF	REV__ENST00000552121.5_1_12:88429328-88442196:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	447.227417	892.44028	0.07869	3.5192E-05	-0.37378	-0.00016716	-0.29509	-0.00013197	447.2271533940572	19.076	0.85924	19.018	18.654	19.514	-0.058174	-0.018779	-9.5695E-05	NaN	9.3474	48	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169440	+		11135	22214	6317	6317							-0.010242453134651441
GLGPVPVKL	9	Unmodified	_GLGPVPVKL_					0	0	0			REV__ENSG00000161992|ENST00000409413|PRR35	REV__ENSG00000161992|ENST00000409413|PRR35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.2087707519531	2	440.286746	878.558939	0.32015	0.00014096	-0.50079	-0.00022049	-0.18063	-7.953E-05	440.2864779000537	45.702	0.35451	45.767	45.57	45.925	0.065048					15	12	2	0	0	0	0.23147	1	10241	10241		19.439	1.304	1	128640	+		11136	16959	6318	6318	14295	14295					0.11480153662182602
GLGWFPLPQH	10	Unmodified	_GLGWFPLPQH_					0	0	0			REV__ENST00000586681.5_2_17:43238546-43238642:+|nuORF	REV__ENST00000586681.5_2_17:43238546-43238642:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3031005859375	2	576.303458	1150.59236	0.59502	0.00034291	-0.73795	-0.00042529	-0.14294	-8.2376E-05	576.302915800622	20.591	0.48334	20.481	20.296	20.779	-0.11003					32	16	3	0	0	0	0.40888	1	2634	2634		1.8442	0.6509	1	202080	+		11137	22521	6319	6319	14296	14296					0.02309155434090826
GLHQLNLIL	9	Unmodified	_GLHQLNLIL_					0	0	0			REV__nc|ENSG00000197658|Q8N4F4-3|SLC22A24	REV__nc|ENSG00000197658|Q8N4F4-3|SLC22A24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8138122558594	2	510.813659	1019.61277	0.40374	0.00020624	-0.064144	-3.2766E-05	0.3396	0.00017347	510.81356973355554	50.054	0.84236	50.054	49.843	50.686	0					89	30	4	0	0	0	0.155	1	11543	11543		30.225	1.738	1	2729800	+		11138	18756	6320	6320	14297	14297					0.10374326093892705
GLHQLTKLRF	10	Unmodified	_GLHQLTKLRF_					0	0	0		ENSG00000164967|ENST00000378959|RPP25L	ENSG00000164967|ENST00000378959|RPP25L	ENSG00000164967|ENST00000378959|RPP25L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.8389587402344	3	404.911902	1211.71388	-0.20283	-8.2129E-05	0.42773	0.00017319	0.2249	9.1065E-05	405.24644027849706	33.249	0.63187	33.249	32.985	33.617	0					43	22	3	0	0	0	0.31969	1	6501	6501		1.5923	0	1	180240			11139	5910	6321	6321	14298	14298					0.11648777796563081
GLHRMIKPFSK	11	Unmodified	_GLHRMIKPFSK_					0	0	0			REV__ENSG00000214946|ENST00000437605|TBC1D26	REV__ENSG00000214946|ENST00000437605|TBC1D26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.75042724609375	3	438.588542	1312.7438	0.090275	3.9594E-05	-3.0061	-0.0013185	-2.9159	-0.0012789	438.92274656261196	37.46	0.40008	37.553	37.363	37.763	0.093014					23	14	2	0	0	0	0.33146	1	7698	7698		2.2527	0.92309	1	109870	+		11140	19071	6322	6322	14299	14299					0.0999339347026762
GLHWTAQV	8	Unmodified	_GLHWTAQV_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2690734863281	2	456.240327	910.466101	-0.0025028	-1.1419E-06	0.16605	7.5759E-05	0.16355	7.4618E-05	456.24031867279194	39.932	0.69251	39.932	39.695	40.388	0					41	24	2	0	0	0	0.34046	1	8515	8515		14.582	5.2343	1	230920	+		11141	22985	6323	6323	14300	14300					0.00728648928804887
GLHYIWES	8	Unmodified	_GLHYIWES_					0	0	0		ENST00000373606.7_1_20:35945124-35945295:+|nuORF	ENST00000373606.7_1_20:35945124-35945295:+|nuORF	ENST00000373606.7_1_20:35945124-35945295:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7960205078125	2	502.745442	1003.47633	0.14378	7.2285E-05	-1.6555	-0.00083229	-1.5117	-0.00076	502.7442659362665	23.222	0.3613	23.134	22.937	23.298	-0.087608					15	12	2	0	0	0	0.3439	1	3410	3410		2.8892	0.31174	1	33061			11142	9872	6324	6324	14301	14301					-0.02526788136617597
GLIALYKLT	9	Unmodified	_GLIALYKLT_					0	0	0			REV__nc|ENSG00000118705|P04844-2|RPN2	REV__nc|ENSG00000118705|P04844-2|RPN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7497863769531	2	496.312961	990.611368	0.30204	0.00014991	-0.22141	-0.00010989	0.080624	4.0015E-05	496.3128310852437	69.885	0.60557	69.951	69.637	70.242	0.066048					36	21	2	0	0	0	0.24289	1	17616	17616		18.146	0	1	269820	+		11143	15020	6325	6325	14302	14302					0.11568692005130288
GLIGWFVILLF	11	Unmodified	_GLIGWFVILLF_					0	0	0			REV__ENST00000461623.1_1_17:67029858-67045457:-|nuORF	REV__ENST00000461623.1_1_17:67029858-67045457:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	639.3848266601562	2	639.38646	1276.75837	0.65436	0.00041839	-2.2049	-0.0014098	-1.5506	-0.0009914	639.3847936013178	47.142	0.43973	47.142	47.053	47.493	0					25	15	2	0	0	0	0.47429	1	10704	10704		1.4819	0.15237	1	258260	+		11144	16654	6326	6326	14303	14303					0.13105788890084114
GLIGWFVILLF	11	Unmodified	_GLIGWFVILLF_					0	0	0			REV__ENST00000461623.1_1_17:67029858-67045457:-|nuORF	REV__ENST00000461623.1_1_17:67029858-67045457:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	639.38646	1276.75837	0.65436	0.00041839	-2.2049	-0.0014098	-1.5506	-0.0009914	639.3847936013178	47.142	0.43973	47.142	47.053	47.493	0	-0.076724	7.2789E-05	NaN	1.4819	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258260	+		11145	16654	6326	6326							0.13105788890084114
GLIGWFVILLF	11	Unmodified	_GLIGWFVILLF_					0	0	0			REV__ENST00000461623.1_1_17:67029858-67045457:-|nuORF	REV__ENST00000461623.1_1_17:67029858-67045457:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	639.38646	1276.75837	0.4799	0.00030684	-1.7439	-0.001115	-1.264	-0.00080816	639.3852179459309	47.177	0.47753	47.23	47.038	47.515	0.052574	0.011632	0.00066238	NaN	1.4819	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316750	+		11146	16654	6326	6326							0.13105788890084114
GLIGWFVILLF	11	Unmodified	_GLIGWFVILLF_					0	0	0			REV__ENST00000461623.1_1_17:67029858-67045457:-|nuORF	REV__ENST00000461623.1_1_17:67029858-67045457:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	639.38646	1276.75837	1.1619	0.00074292	-2.7716	-0.0017721	-1.6097	-0.0010292	639.8861685965834	47.229	0.58504	47.283	47.037	47.622	0.054371	0.065092	-0.00065189	NaN	1.4819	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245860	+		11147	16654	6326	6326							0.13105788890084114
GLIKAHTVAW	10	Unmodified	_GLIKAHTVAW_					0	0	0			REV__ENST00000575027.1_1_17:6493863-6510239:-|nuORF	REV__ENST00000575027.1_1_17:6493863-6510239:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.318115234375	2	548.319109	1094.62366	0.015198	8.3335E-06	-0.80303	-0.00044032	-0.78783	-0.00043198	548.3184303769561	107.65	0.1244	107.65	107.6	107.73	0					52	19	4	0	0	0	0.39745	1	28345	28345		3.9444	1.8846	1	8716500	+		11148	18891	6327	6327	14304	14304					0.0801372846817685
GLIKAHTVAW	10	Unmodified	_GLIKAHTVAW_					0	0	0			REV__ENST00000575027.1_1_17:6493863-6510239:-|nuORF	REV__ENST00000575027.1_1_17:6493863-6510239:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3182983398438	2	548.319109	1094.62366	0.29309	0.00016071	-1.0153	-0.00055671	-0.72221	-0.000396	548.3183655230091	107.65	0.11852	107.64	107.61	107.73	-0.0085678					49	18	3	0	0	0	0.39745	1	28361	28361		3.9444	1.3669	1	8445700	+		11149	18891	6327	6327	14305	14305					0.0801372846817685
GLIKAHTVAW	10	Unmodified	_GLIKAHTVAW_					0	0	0			REV__ENST00000575027.1_1_17:6493863-6510239:-|nuORF	REV__ENST00000575027.1_1_17:6493863-6510239:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3184814453125	2	548.319109	1094.62366	0.4366	0.0002394	-1.1837	-0.00064903	-0.74707	-0.00040963	548.318214478261	107.64	0.10607	107.64	107.61	107.71	0.0067062					46	16	4	0	0	0	0.39745	1	28385	28385		3.9444	1.6417	1	6789100	+		11150	18891	6327	6327	14306	14306					0.0801372846817685
GLIKIQNSNKW	11	Unmodified	_GLIKIQNSNKW_					0	0	0			REV__ENSG00000010610|ENST00000011653|CD4	REV__ENSG00000010610|ENST00000011653|CD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.553955078125	3	434.250583	1299.72992	-0.23127	-0.00010043	-0.49718	-0.0002159	-0.72846	-0.00031633	434.249993001109	27.396	0.45874	27.374	27.1	27.559	-0.021412					21	15	2	0	0	0	0.33169	1	4637	4637		6.2344	0.83165	1	89857	+		11151	13416	6328	6328	14307	14307					0.09204439242853368
GLINIRLTF	9	Unmodified	_GLINIRLTF_					0	0	0			REV__ENST00000344691.8_1_21:36259762-36259828:-|nuORF	REV__ENST00000344691.8_1_21:36259762-36259828:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2835693359375	2	523.821484	1045.62842	0.37547	0.00019668	0.47726	0.00025	0.85273	0.00044668	523.8216442598972	38.895	0.26928	38.988	38.836	39.105	0.09267					11	9	2	0	0	0	0.21137	1	8131	8131		12.532	0	1	129950	+		11152	20141	6329	6329	14308	14308					0.10742612610920332
GLIPWLLRFP	10	Unmodified	_GLIPWLLRFP_					0	0	0			REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A	REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3699340820312	2	606.368601	1210.72265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.955	1	88.955	88.455	89.455	0								0	0	0	0.38196	1	23519	23519		0.45834	0	1		+		11153	13358	6330	6330	14309	14309					0.12571751433074496
GLISRKKPPLS	11	Unmodified	_GLISRKKPPLS_					0	0	0			REV__nc|ENSG00000059122|Q4VC44-2|FLYWCH1	REV__nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3814086914062	2	598.379697	1194.74484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.16	1	102.16	101.66	102.66	-0.0033646								0	0	0	0.37382	1	27239	27239		2.9952	0	1		+		11154	13612	6331	6331	14310	14310					0.15525931110846614
GLKAHIGF	8	Unmodified	_GLKAHIGF_					0	0	0		ENST00000481074.1_1_7:132938364-132938703:+|nuORF	ENST00000481074.1_1_7:132938364-132938703:+|nuORF	ENST00000481074.1_1_7:132938364-132938703:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.53509521484375	2	421.747788	841.481023	-0.31153	-0.00013139	-1.6684	-0.00070366	-1.98	-0.00083504	421.745727989501	27.638	0.51401	27.617	27.291	27.805	-0.021412					20	17	2	0	0	0	0.34297	1	4718	4718		6.3541	0.59368	1	54842			11155	11018	6332	6332	14311	14311					0.05394140796795455
GLKHDTTSYSF	11	Unmodified	_GLKHDTTSYSF_					0	0	0		ENSG00000138152|ENST00000260723|BTBD16;nc|ENSG00000138152|Q32M84-2|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.20343017578125	3	419.203299	1254.58807	0.6064	0.00025421	-0.1255	-5.261E-05	0.4809	0.0002016	419.2032741998733	56.085	1.3553	56.085	55.682	57.038	0					126	49	4	0	0	0	0.34542	1	13526	13526		10.315	1.8709	1	7872100			11156	4123	6333	6333	14312	14312					-0.029043985701719066
GLKHDTTSYSF	11	Unmodified	_GLKHDTTSYSF_					0	0	0		ENSG00000138152|ENST00000260723|BTBD16;nc|ENSG00000138152|Q32M84-2|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.2034606933594	3	419.203299	1254.58807	0.62116	0.00026039	-0.12231	-5.1272E-05	0.49886	0.00020912	419.20328645085715	56.029	1.119	56.1	55.675	56.794	0.070885					114	41	4	0	0	0	0.34542	1	13496	13496		10.315	1.8709	1	8367100			11157	4123	6333	6333	14313	14313					-0.029043985701719066
GLKHDTTSYSF	11	Unmodified	_GLKHDTTSYSF_					0	0	0		ENSG00000138152|ENST00000260723|BTBD16;nc|ENSG00000138152|Q32M84-2|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	ENSG00000138152|ENST00000260723|BTBD16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.2037353515625	3	419.203299	1254.58807	0.69278	0.00029042	-0.31785	-0.00013325	0.37493	0.00015717	419.20331432200487	56.226	1.2777	56.207	55.696	56.973	-0.019077					132	46	5	0	0	0	0.34542	2	13574	13420;13574		10.315	0.84524	1	10230000			11158	4123	6333	6333	14314;14315	14315					-0.029043985701719066
GLKLNTTVV	9	Unmodified	_GLKLNTTVV_					0	0	0			REV__nc|ENSG00000124164|O95292-2|VAPB	REV__nc|ENSG00000124164|O95292-2|VAPB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.26837158203125	2	472.792392	943.570232	0.1308	6.1841E-05	-0.29697	-0.0001404	-0.16617	-7.8563E-05	472.79221877044967	19.269	0.58176	19.213	18.989	19.571	-0.055693					28	19	2	0	0	0	0.25988	1	2120	2120		3.9444	1.6417	1	58793	+		11159	15211	6334	6334	14316	14316					0.0961893096566655
GLKLNTTVV	9	Unmodified	_GLKLNTTVV_					0	0	0			REV__nc|ENSG00000124164|O95292-2|VAPB	REV__nc|ENSG00000124164|O95292-2|VAPB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	472.792392	943.570232	-0.11861	-5.6078E-05	0.0092293	4.3636E-06	-0.10938	-5.1715E-05	472.79233128393355	19.196	0.42518	19.196	19.006	19.431	0	-0.0028176	0.00015368	NaN	3.9444	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61624	+		11160	15211	6334	6334							0.0961893096566655
GLKLNTTVV	9	Unmodified	_GLKLNTTVV_					0	0	0			REV__nc|ENSG00000124164|O95292-2|VAPB	REV__nc|ENSG00000124164|O95292-2|VAPB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	472.792392	943.570232	0.08229	3.8906E-05	-0.38424	-0.00018167	-0.30195	-0.00014276	472.79238717680755	19.304	0.42821	19.188	19.005	19.433	-0.11592	-0.011463	-0.00021838	NaN	3.9444	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48298	+		11161	15211	6334	6334							0.0961893096566655
GLKLTLIMF	9	Unmodified	_GLKLTLIMF_					0	0	0			REV__ENST00000319933.6_1_5:102612416-102612584:+|nuORF	REV__ENST00000319933.6_1_5:102612416-102612584:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3172607421875	2	518.317189	1034.61982	0.65253	0.00033822	0.052188	2.705E-05	0.70472	0.00036527	518.3169848183154	78.859	0.64073	78.859	78.462	79.103	0					84	25	4	0	0	0	0.32733	1	20438	20438		4.756	0	1	818310	+		11162	19958	6335	6335	14317	14317					0.10389922650119843
GLLARQCRRR	10	Unmodified	_GLLARQCRRR_					0	0	0			REV__ENST00000606729.1_1_6:89790168-89790285:-|nuORF	REV__ENST00000606729.1_1_6:89790168-89790285:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.8880920410156	3	410.243769	1227.70948	-0.042319	-1.7361E-05	-2.5183	-0.0010331	-2.5606	-0.0010505	410.242509343586	22.81	0.42208	22.765	22.529	22.951	-0.044867					29	14	3	0	0	0	0.31911	1	3259	3259		6.6304	1.5829	1	68660	+		11163	22663	6336	6336	14318	14318					0.10472990102039148
GLLCHLEDMCL	11	Unmodified	_GLLCHLEDMCL_					0	0	0		ENSG00000204301|ENST00000375023|NOTCH4	ENSG00000204301|ENST00000375023|NOTCH4	ENSG00000204301|ENST00000375023|NOTCH4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.5109558105469	3	416.192472	1245.55559	0.26148	0.00010883	1.5108	0.00062879	1.7723	0.00073762	416.1922005123241	57.688	1.1153	57.774	57.491	58.606	0.085621					59	40	3	0	0	0	0.33064	1	13926	13926		7.9454	0.46833	1	237620			11164	8213	6337	6337	14319	14319					-0.057369685606317944
GLLDIILAK	9	Unmodified	_GLLDIILAK_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7398986816406	2	478.312961	954.611368	0.43571	0.00020841	-0.68758	-0.00032888	-0.25187	-0.00012047	478.31253416713537	78.795	0.59232	78.795	78.511	79.103	0					38	23	2	0	0	0	0.16853	1	20405	20405		38.176	24.27	1	142610			11165	1349	6338	6338	14320	14320					0.13224692005132965
GLLDIILAK	9	Unmodified	_GLLDIILAK_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7396240234375	2	478.312961	954.611368	0.4863	0.0002326	0.12702	6.0755E-05	0.61331	0.00029336	478.3131280933677	78.695	1.031	78.753	78.058	79.089	0.058151					53	39	2	0	0	0	0.10058	1	20388	20388		45.7	20.3	1	158120			11166	1349	6338	6338	14321	14321					0.13224692005132965
GLLDIILAK	9	Unmodified	_GLLDIILAK_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7398986816406	2	478.312961	954.611368	0.57228	0.00027373	-0.40967	-0.00019595	0.16261	7.7781E-05	478.3126813940419	78.861	0.56517	78.831	78.686	79.251	-0.030434					37	23	2	0	0	0	0.20167	1	20399	20399		22.736	0	1	137730			11167	1349	6338	6338	14322	14322					0.13224692005132965
GLLESRLTI	9	Unmodified	_GLLESRLTI_					0	0	0			REV__ENSG00000164176|ENST00000296591|EDIL3	REV__ENSG00000164176|ENST00000296591|EDIL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.29071044921875	2	501.303124	1000.5917	0.79333	0.0003977	-0.35042	-0.00017567	0.44291	0.00022203	501.3029198660056	78.463	0.71011	78.432	78.034	78.744	-0.030434					40	26	2	0	0	0	0.21447	1	20347	20347		21.537	2.28	1	105210	+		11168	17133	6339	6339	14323	14323					0.09142315994370165
GLLFIFLIMSF	11	Unmodified	_GLLFIFLIMSF_					0	0	0			REV__ENSG00000062096|ENST00000381127|ARSF	REV__ENSG00000062096|ENST00000381127|ARSF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7719421386719	3	434.250644	1299.7301	-0.20762	-9.0158E-05	2.2497	0.00097693	2.0421	0.00088677	434.25143510035434	18.17	0.60059	18.052	17.757	18.358	-0.11739					34	20	2	0	0	0	0.32909	1	1889	1889		10.899	2.4547	1	45482	+		11169	13629	6340	6340	14324	14324					0.09222722918480031
GLLFIFLIMSF	11	Unmodified	_GLLFIFLIMSF_					0	0	0			REV__ENSG00000062096|ENST00000381127|ARSF	REV__ENSG00000062096|ENST00000381127|ARSF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7720642089844	3	434.250644	1299.7301	-0.33262	-0.00014444	1.4089	0.00061182	1.0763	0.00046737	434.25150326291515	18.252	0.6123	18.194	17.846	18.458	-0.058172					49	21	3	0	0	0	0.33094	1	1881	1881		7.4771	2.0744	1	71332	+		11170	13629	6340	6340	14325	14325					0.09222722918480031
GLLGLQREG	9	Unmodified	_GLLGLQREG_					0	0	0		ENSG00000149633|ENST00000279024|KIAA1755	ENSG00000149633|ENST00000279024|KIAA1755	ENSG00000149633|ENST00000279024|KIAA1755	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.76116943359375	2	471.771991	941.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.776	1	21.727	21.227	22.227	-0.049377								0	0	0	0.22457	1	2942	2942		14.582	0	1				11171	4884	6341	6341	14326	14326					0.05632589646052111
GLLKVHYSDRL	11	Unmodified	_GLLKVHYSDRL_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.88214111328125	3	434.250583	1299.72992	-0.05604	-2.4335E-05	-0.5024	-0.00021817	-0.55844	-0.0002425	434.25041464949686	24.66	0.90294	24.604	24.283	25.186	-0.055931					60	31	3	0	0	0	0.33085	1	3778	3778		8.2864	2.8837	1	156940			11172	7673	6342	6342	14327	14327					0.09204439242853368
GLLKVHYSDRL	11	Unmodified	_GLLKVHYSDRL_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	434.250583	1299.72992	-0.28333	-0.00012303	-0.40964	-0.00017789	-0.69297	-0.00030092	434.25028043585684	24.595	0.74954	24.563	24.203	24.953	-0.031408	-0.021606	0.0001892	NaN	8.2864	56	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237120			11173	7673	6342	6342							0.09204439242853368
GLLLLYLSVG	10	Unmodified	_GLLLLYLSVG_					0	0	0		ENSG00000156486|ENST00000287042|KCNS2	ENSG00000156486|ENST00000287042|KCNS2	ENSG00000156486|ENST00000287042|KCNS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.307861328125	2	524.326068	1046.63758	0.69435	0.00036407	-0.83885	-0.00043983	-0.1445	-7.5765E-05	524.3255278013337	66.192	0.61982	66.192	65.981	66.6	0					53	21	3	0	0	0	0.31165	1	16651	16651		15.847	2.3393	1	1230900			11174	5237	6343	6343	14328	14328					0.116129611766155
GLLLQAAASK	10	Unmodified	_GLLLQAAASK_					0	0	0		ENSG00000175161|ENST00000383699|CADM2	ENSG00000175161|ENST00000383699|CADM2	ENSG00000175161|ENST00000383699|CADM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.9482727050781	2	486.297842	970.581131	0.44369	0.00021577	-0.99883	-0.00048573	-0.55514	-0.00026996	486.2976050257134	32.661	0.44983	32.661	32.415	32.865	0					30	15	3	0	0	0	0.23542	1	6247	6247		39.95	3.8227	1	189910			11175	6842	6344	6344	14329	14329					0.09466333339935318
GLLLQIFWEII	11	Unmodified	_GLLLQIFWEII_					0	0	0			REV__nc|ENSG00000114670|Q8NG66-2|NEK11	REV__nc|ENSG00000114670|Q8NG66-2|NEK11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2841491699219	3	448.935713	1343.78531	0.28335	0.00012721	-0.46724	-0.00020976	-0.18389	-8.2554E-05	448.93545624969136	75.2	1.3135	75.2	74.507	75.821	0					128	46	5	0	0	0	0.31673	1	19336	19336		17.863	3.645	1	1985400	+		11176	14842	6345	6345	14330	14330					0.1271685271062779
GLLLQIFWEII	11	Unmodified	_GLLLQIFWEII_					0	0	0			REV__nc|ENSG00000114670|Q8NG66-2|NEK11	REV__nc|ENSG00000114670|Q8NG66-2|NEK11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.8000793457031	3	448.935713	1343.78531	0.061548	2.7631E-05	0.15814	7.0994E-05	0.21969	9.8625E-05	448.9354986924227	62.135	0.54337	62.232	61.978	62.521	0.096985					32	19	3	0	0	0	0.32625	1	15352	15352		16.275	6.5103	1	183750	+		11177	14842	6345	6345	14331	14331					0.1271685271062779
GLLLQIFWEII	11	Unmodified	_GLLLQIFWEII_					0	0	0			REV__nc|ENSG00000114670|Q8NG66-2|NEK11	REV__nc|ENSG00000114670|Q8NG66-2|NEK11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.2840881347656	3	448.935713	1343.78531	0.21465	9.6363E-05	0.19729	8.8571E-05	0.41194	0.00018493	448.93548695765486	75.13	0.99686	75.182	74.946	75.943	0.052361					99	36	4	0	0	0	0.29849	1	19304	19304		22.775	11.876	1	1372800	+		11178	14842	6345	6345	14332	14332					0.1271685271062779
GLLLQIFWEII	11	Unmodified	_GLLLQIFWEII_					0	0	0			REV__nc|ENSG00000114670|Q8NG66-2|NEK11	REV__nc|ENSG00000114670|Q8NG66-2|NEK11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.28411865234375	3	448.935713	1343.78531	0.46056	0.00020676	-0.25631	-0.00011506	0.20426	9.1699E-05	448.93536323489343	75.259	0.88065	75.228	74.922	75.803	-0.031487					89	32	4	0	0	0	0.31673	1	19337	19337		17.863	6.9642	1	1624300	+		11179	14842	6345	6345	14333	14333					0.1271685271062779
GLLLQIFWEII	11	Unmodified	_GLLLQIFWEII_					0	0	0			REV__nc|ENSG00000114670|Q8NG66-2|NEK11	REV__nc|ENSG00000114670|Q8NG66-2|NEK11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	448.935713	1343.78531	0.25621	0.00011502	-0.29306	-0.00013157	-0.03685	-1.6543E-05	448.93544294627884	62.218	0.52982	62.218	61.996	62.526	0	-0.023858	-0.00031612	NaN	20.871	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202910	+		11180	14842	6345	6345							0.1271685271062779
GLLLQIFWEII	11	Unmodified	_GLLLQIFWEII_					0	0	0			REV__nc|ENSG00000114670|Q8NG66-2|NEK11	REV__nc|ENSG00000114670|Q8NG66-2|NEK11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	448.935713	1343.78531	0.24229	0.00010877	0.015145	6.7989E-06	0.25743	0.00011557	448.9355180120406	62.283	0.5594	62.274	61.955	62.514	-0.0085526	0.032864	9.8979E-05	NaN	20.871	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166360	+		11181	14842	6345	6345							0.1271685271062779
GLLNEVKAK	9	Unmodified	_GLLNEVKAK_					0	0	0			REV__ENST00000582429.5_3_17:80398119-80400257:+|nuORF	REV__ENST00000582429.5_3_17:80398119-80400257:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.6139831542969	2	486.297842	970.581131	0.45691	0.00022219	-1.057	-0.00051401	-0.60008	-0.00029182	486.2972235649113	32.537	0.39138	32.592	32.395	32.786	0.055313					20	13	2	0	0	0	0.1939	1	6206	6206		30.637	3.0077	1	208510	+		11182	17530	6346	6346	14334	14334					0.09466333339946686
GLLRCIVQF	9	Unmodified	_GLLRCIVQF_					0	0	0			REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8134765625	2	524.802237	1047.58992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.458	1	72.429	71.929	72.929	-0.028534								0	0	0	0.19804	1	18458	18458		23.148	3.7094	1		+		11183	23233	6347	6347	14335	14335					0.06802983704778853
GLLSAQKLTA	10	Unmodified	_GLLSAQKLTA_					0	0	0		ENST00000577194.1_1_17:73494336-73494804:+|nuORF;ENST00000581453.1_1_17:73492852-73494804:+|nuORF;ENST00000585105.5_1_17:73489877-73495164:+|nuORF;KIAA0195|p.L1307Cfs*2|1|0.07|ENSG00000177728|chr17:75499000-75499000|C/-|frameshift_variant;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94	ENST00000577194.1_1_17:73494336-73494804:+|nuORF	ENST00000577194.1_1_17:73494336-73494804:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.6346130371094	2	501.303124	1000.5917	0.40357	0.00020231	1.8606	0.00093273	2.2642	0.001135	501.30436963876184	95.396	0.16709	95.392	95.313	95.48	-0.0038147					25	16	2	0	0	0	0.3144	1	25494	25494		13.042	2.2185	1	106500			11184	7013	6348	6348	14336	14336					0.09142315994358796
GLLSHGRRRAS	11	Unmodified	_GLLSHGRRRAS_					0	0	0			REV__nc|ENSG00000132879|Q9H4M3-2|FBXO44	REV__nc|ENSG00000132879|Q9H4M3-2|FBXO44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2312927246094	3	403.902288	1208.68504	-0.31344	-0.0001266	-3.191	-0.0012888	-3.5044	-0.0014154	403.90087719274385	19.064	0.15052	19.064	19.006	19.157	0					6	4	2	0	0	0	0.3333	1	2143	2143		1.3296	0.11481	1	14666	+		11185	22988	6349	6349	14337	14337					0.08904053220180685
GLLSPQRKE	9	Unmodified	_GLLSPQRKE_					0	0	0		nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3;nc|ENSG00000158161|Q99504-2|EYA3	nc|ENSG00000158161|Q99504-4|EYA3	nc|ENSG00000158161|Q99504-4|EYA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2985229492188	2	514.298373	1026.58219	0.50978	0.00026218	-0.24463	-0.00012581	0.26515	0.00013636	514.2982286315752	86.267	1.0642	86.267	85.819	86.883	0					97	41	5	0	0	0	0.31763	1	22733	22733		6.2058	6.2058	1	1245300			11186	5344	6350	6350	14338	14338					0.0699654770885445
GLLSQSPPA	9	Unmodified	_GLLSQSPPA_					0	0	0		ENSG00000126562|ENST00000246914|WNK4;nc|ENSG00000126562|Q96J92-3|WNK4	ENSG00000126562|ENST00000246914|WNK4	ENSG00000126562|ENST00000246914|WNK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.88262939453125	2	435.239993	868.465432	0.014517	6.3182E-06	-3.4674	-0.0015091	-3.4529	-0.0015028	435.2373098458428	21.228	0.16954	21.228	21.169	21.338	0					6	5	2	0	0	0	0.25417	1	2796	2796		8.5933	0.68312	1	14426			11187	3278	6351	6351	14339	14339					0.025938094890989305
GLLVDGFCLF	10	Unmodified	_GLLVDGFCLF_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2813110351562	2	542.280803	1082.54705	0.44009	0.00023865	0.75796	0.00041103	1.1981	0.00064968	542.2813220322172	43.634	0.75782	43.634	43.307	44.065	0					77	27	4	0	0	0	0.14015	1	9585	9585		39.957	5.8549	1	2281200	+		11188	13679	6352	6352	14340	14340					0.009081688566766388
GLLVDGFCLF	10	Unmodified	_GLLVDGFCLF_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.3240966796875	2	542.280803	1082.54705	0.44009	0.00023865	0.75796	0.00041103	1.1981	0.00064968	542.2813220322172	43.634	0.75782	43.634	43.307	44.065	0					77	27	4	0	0	0	0.2291	1	9608	9608		32.305	5.4218	1	2281200	+		11189	13679	6352	6352	14341	14341					0.009081688566766388
GLLVRRPV	8	Unmodified	_GLLVRRPV_					0	0	0			REV__ENST00000535977.5_1_16:678431-678971:+|nuORF	REV__ENST00000535977.5_1_16:678431-678971:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2433776855469	2	455.303262	908.59197	0.036665	1.6694E-05	-1.1536	-0.00052525	-1.117	-0.00050856	455.3026263328624	39.218	0.65955	39.31	39.17	39.83	0.09267					31	23	2	0	0	0	0.34147	1	8380	8380		11.114	4.7604	1	188860	+		11190	22076	6353	6353	14342	14342					0.13401780504898397
GLLVSSRH	8	Unmodified	_GLLVSSRH_					0	0	0		ENST00000366591.4_1_1:236305922-236343463:+|nuORF	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.8821105957031	2	434.753601	867.49265	-0.14791	-6.4303E-05	0.65014	0.00028265	0.50223	0.00021835	434.7535304454519	25.004	0.43768	24.948	24.748	25.186	-0.055931					22	15	2	0	0	0	0.34218	1	3865	3865		9.3474	2.9933	1	48772			11191	9706	6354	6354	14343	14343					0.05360337820150107
GLLVSSRH	8	Unmodified	_GLLVSSRH_					0	0	0		ENST00000366591.4_1_1:236305922-236343463:+|nuORF	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	434.753601	867.49265	-0.12782	-5.5571E-05	1.1528	0.00050116	1.0249	0.00044559	434.75354746127164	24.933	0.41348	24.933	24.706	25.12	0	-0.0073817	0.00027631	NaN	9.3474	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32275			11192	9706	6354	6354							0.05360337820150107
GLMETNFYDQ	10	Unmodified	_GLMETNFYDQ_					0	0	0		ENSG00000075234|ENST00000381031|TTC38	ENSG00000075234|ENST00000381031|TTC38	ENSG00000075234|ENST00000381031|TTC38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.1747741699219	3	406.509623	1216.50704	-0.20193	-8.2086E-05	0.72938	0.0002965	0.52745	0.00021441	406.5098728402566	26.417	0.34431	26.417	26.242	26.586	0					17	11	2	0	0	0	0.32082	1	4378	4378		3.3196	1.4133	1	52359			11193	1040	6355	6355	14344	14344					-0.09255422604542218
GLMGFIVYK	9	Oxidation (M)	_GLM(Oxidation (M))GFIVYK_		GLM(1)GFIVYK		GLM(57)GFIVYK	0	0	1		ENSG00000156411|ENST00000286953|ATP5MJ;ENST00000554528.1_1_14:104381385-104387854:-|nuORF;nc|ENSG00000156411|P56378-2|ATP5MJ;ENST00000557260.1_1_14:104380761-104387854:-|nuORF	ENSG00000156411|ENST00000286953|ATP5MJ	ENSG00000156411|ENST00000286953|ATP5MJ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.283447265625	2	522.283346	1042.55214	0.76885	0.00040156	-0.37315	-0.00019489	0.3957	0.00020667	522.2829940875356	54.487	0.72927	54.487	54.162	54.891	0					61	26	3	0	0	0	0.05508	1	13001	13001		57.471	45.831	1	2208300			11194	5233	6356	6356	14345	14345		636			0.032564727192720966
GLMGFIVYK	9	Oxidation (M)	_GLM(Oxidation (M))GFIVYK_		GLM(1)GFIVYK		GLM(85)GFIVYK	0	0	1		ENSG00000156411|ENST00000286953|ATP5MJ;ENST00000554528.1_1_14:104381385-104387854:-|nuORF;nc|ENSG00000156411|P56378-2|ATP5MJ;ENST00000557260.1_1_14:104380761-104387854:-|nuORF	ENSG00000156411|ENST00000286953|ATP5MJ	ENSG00000156411|ENST00000286953|ATP5MJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2835083007812	2	522.283346	1042.55214	0.68251	0.00035647	-0.27163	-0.00014187	0.41088	0.0002146	522.283054341539	54.452	0.77222	54.515	54.142	54.915	0.063202					72	28	4	0	0	0	0.0061338	1	12931	12931		85.357	49.313	1	2068000			11195	5233	6356	6356	14346	14346		636			0.032564727192720966
GLMGFIVYK	9	Oxidation (M)	_GLM(Oxidation (M))GFIVYK_		GLM(1)GFIVYK		GLM(82)GFIVYK	0	0	1		ENSG00000156411|ENST00000286953|ATP5MJ;ENST00000554528.1_1_14:104381385-104387854:-|nuORF;nc|ENSG00000156411|P56378-2|ATP5MJ;ENST00000557260.1_1_14:104380761-104387854:-|nuORF	ENSG00000156411|ENST00000286953|ATP5MJ	ENSG00000156411|ENST00000286953|ATP5MJ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3162841796875	2	522.283346	1042.55214	0.70787	0.00036971	-0.36246	-0.00018931	0.3454	0.0001804	522.2830713355314	54.686	0.75596	54.67	54.224	54.98	-0.015923					42	26	2	0	0	0	0.012601	1	13035	13035		81.864	53.377	1	2551700			11196	5233	6356	6356	14347	14347		636			0.032564727192720966
GLMRLAANMED	11	Unmodified	_GLMRLAANMED_					0	0	0		nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.1747741699219	3	407.530252	1219.56893	-0.16544	-6.7423E-05	-3.6851	-0.0015018	-3.8506	-0.0015692	407.52886968786476	26.742	0.31935	26.742	26.44	26.759	0					18	10	2	0	0	0	0.33169	1	4378	4378		6.2344	4.7792	1	68685			11197	1396	6357	6357	14348	14348					-0.03207394457058399
GLNKLTKVL	9	Unmodified	_GLNKLTKVL_					0	0	0			REV__nc|ENSG00000173585|P51686-2|CCR9	REV__nc|ENSG00000173585|P51686-2|CCR9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.323974609375	2	493.32386	984.633166	0.46796	0.00023086	0.5341	0.00026349	1.0021	0.00049434	493.32432664859755	63.173	0.66371	63.269	62.957	63.621	0.095722					58	23	4	0	0	0	0.15219	1	15613	15613		30.637	5.2372	1	438910	+		11198	17793	6358	6358	14349	14349					0.14023496753691234
GLNKLTKVL	9	Unmodified	_GLNKLTKVL_					0	0	0			REV__nc|ENSG00000173585|P51686-2|CCR9	REV__nc|ENSG00000173585|P51686-2|CCR9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.32386	984.633166	0.3884	0.00019161	0.71899	0.0003547	1.1074	0.00054631	493.3240768354556	63.208	0.4843	63.199	62.994	63.478	-0.0085564	-0.034632	8.7442E-05	NaN	30.637	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317820	+		11199	17793	6358	6358							0.14023496753691234
GLNPSILR	8	Unmodified	_GLNPSILR_					0	0	0			REV__ENSG00000130479|ENST00000324096|MAP1S	REV__ENSG00000130479|ENST00000324096|MAP1S	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.5799255371094	2	435.263802	868.513051	0.13503	5.8775E-05	-0.26338	-0.00011464	-0.12835	-5.5865E-05	435.2635482147551	36.453	0.61469	36.535	36.331	36.945	0.082359					40	21	2	0	0	0	0.32886	1	7530	7530		15.847	0	1	723160	+		11200	15459	6359	6359	14350	14350					0.07353508479957327
GLNSVDRIE	9	Unmodified	_GLNSVDRIE_					0	0	0			REV__nc|ENSG00000078596|O43736-2|ITM2A	REV__nc|ENSG00000078596|O43736-2|ITM2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.79534912109375	2	501.764363	1001.51417	0.22024	0.00011051	0.98051	0.00049198	1.2007	0.00060249	501.76500943610154	16.342	0.5098	16.342	16.123	16.632	0					25	17	2	0	0	0	0.25431	1	1307	1307		9.3831	0	1	37552	+		11201	13858	6360	6360	14351	14351					0.013476780581981984
GLPATTLKL	9	Unmodified	_GLPATTLKL_					0	0	0			REV__ENST00000216268.5_1_22:50280822-50281059:+|nuORF	REV__ENST00000216268.5_1_22:50280822-50281059:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.776611328125	2	457.289485	912.564418	0.26036	0.00011906	-0.017461	-7.9848E-06	0.2429	0.00011108	457.2895933895622	55.163	0.61602	55.163	54.891	55.507	0					37	22	2	0	0	0	0.062246	1	13212	13212		48.346	2.3249	1	889040	+		11202	19411	6361	6361	14352	14352					0.10463832453979194
GLPCARCSL	9	Unmodified	_GLPCARCSL_					0	0	0			REV__ENST00000525294.5_1_6:44102412-44108244:+|nuORF	REV__ENST00000525294.5_1_6:44102412-44108244:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.60260009765625	2	460.228048	918.441542	0.020607	9.4839E-06	-0.26559	-0.00012223	-0.24498	-0.00011275	460.22769163028465	17.851	0.9768	17.791	17.53	18.507	-0.060429					77	34	4	0	0	0	0.22596	1	1800	1800		21.747	21.747	1	444050	+		11203	21950	6362	6362	14353	14353					-0.020940705406019333
GLPCARCSL	9	Unmodified	_GLPCARCSL_					0	0	0			REV__ENST00000525294.5_1_6:44102412-44108244:+|nuORF	REV__ENST00000525294.5_1_6:44102412-44108244:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	460.228048	918.441542	-0.10545	-4.8533E-05	-0.59912	-0.00027573	-0.70457	-0.00032426	460.22772161142296	17.86	0.92485	17.742	17.515	18.44	-0.11739	-0.0037509	-0.00018335	NaN	21.747	72	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	550730	+		11204	21950	6362	6362							-0.020940705406019333
GLPDAHLGL	9	Unmodified	_GLPDAHLGL_					0	0	0		nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ	nc|ENSG00000011451|O95785-3|WIZ	nc|ENSG00000011451|O95785-3|WIZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	446.7479553222656	2	446.747985	891.481417	-0.034693	-1.5499E-05	0.059779	2.6706E-05	0.025086	1.1207E-05	446.7477348663871	61.141	0.88662	61.238	61.065	61.952	0.096989					54	32	3	0	0	0	0.040195	1	14991	14991		56.541	5.6862	1	1267100			11205	443	6363	6363	14354	14354					0.031335157259945845
GLPDAHLGL	9	Unmodified	_GLPDAHLGL_					0	0	0		nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ	nc|ENSG00000011451|O95785-3|WIZ	nc|ENSG00000011451|O95785-3|WIZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.7479553222656	2	446.747985	891.481417	0.099581	4.4488E-05	0.065638	2.9324E-05	0.16522	7.3811E-05	446.7477301244556	61.195	0.91238	61.185	60.992	61.905	-0.0094566					53	32	3	0	0	0	0.06608	1	15036	15036		46.921	0	1	1550900			11206	443	6363	6363	14355	14355					0.031335157259945845
GLPDAHLGL	9	Unmodified	_GLPDAHLGL_					0	0	0		nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ	nc|ENSG00000011451|O95785-3|WIZ	nc|ENSG00000011451|O95785-3|WIZ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	446.747985	891.481417	0.11425	5.104E-05	-0.21375	-9.5491E-05	-0.099498	-4.4451E-05	446.74772113983863	61.147	0.92779	61.147	60.992	61.92	0	-0.043041	-0.00013701	NaN	56.541	54	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1167900			11207	443	6363	6363							0.031335157259945845
GLPDAHLGL	9	Unmodified	_GLPDAHLGL_					0	0	0		nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ	nc|ENSG00000011451|O95785-3|WIZ	nc|ENSG00000011451|O95785-3|WIZ	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	446.747985	891.481417	-0.034693	-1.5499E-05	0.059779	2.6706E-05	0.025086	1.1207E-05	446.7477348663871	61.141	0.88662	61.238	61.065	61.952	0.096989	0.047782	0.00010738	NaN	56.541	54	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1267100			11208	443	6363	6363							0.031335157259945845
GLPQILGI	8	Unmodified	_GLPQILGI_					0	0	0			REV__ENSG00000094963|ENST00000209929|FMO2	REV__ENSG00000094963|ENST00000209929|FMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.7576599121094	2	405.757821	809.501089	-0.25324	-0.00010275	0.038119	1.5467E-05	-0.21512	-8.7285E-05	405.7578173297436	69.505	1.0717	69.505	69.229	70.301	0					79	38	3	0	0	0	0.083534	1	17563	17563		63.394	7.3454	1	846470	+		11209	14093	6364	6364	14356	14356					0.08871891736748694
GLPQISQPAK	10	Unmodified	_GLPQISQPAK_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;ENST00000522665.5_1_8:134254200-134261004:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3350219726562	2	519.800749	1037.58694	0.51115	0.0002657	0.37773	0.00019635	0.88888	0.00046204	519.8008230749876	36.4	0.93084	36.4	35.856	36.787	0					50	33	2	0	0	0	0.26049	1	7350	7350		35.612	16.25	1	707150			11210	1891	6365	6365	14357	14357					0.06965431851608628
GLPRGPGMLL	10	Unmodified	_GLPRGPGMLL_					0	0	0			REV__ENST00000455833.6_2_1:19234916-19235051:-|nuORF	REV__ENST00000455833.6_2_1:19234916-19235051:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.27691650390625	2	505.794412	1009.57427	0.37496	0.00018966	2.0136	0.0010185	2.3886	0.0012081	506.29649494052313	73.174	0.54978	73.145	72.98	73.529	-0.029305					25	19	2	0	0	0	0.318	1	18707	18707		7.2892	0.93513	1	302340	+		11211	21165	6366	6366	14358	14358					0.06986697187733171
GLPSRQTAL	9	Unmodified	_GLPSRQTAL_					0	0	0		BAHD1|p.K734Q|1|0.25|ENSG00000140320|chr15:40465987-40465987|A/C|missense_variant	BAHD1|p.K734Q|1|0.25|ENSG00000140320|chr15:40465987-40465987|A/C|missense_variant	BAHD1|p.K734Q|1|0.25|ENSG00000140320|chr15:40465987-40465987|A/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.281982421875	2	471.771991	941.529429	0.039653	1.8707E-05	-0.076502	-3.6091E-05	-0.036849	-1.7384E-05	471.77179615357045	39.456	0.67193	39.548	39.105	39.777	0.09267					35	23	2	0	0	0	0.25202	1	8236	8236		10.824	10.824	1	138390			11212	67	6367	6367	14359	14359					0.056325896460293734
GLPTRLPEI	9	Unmodified	_GLPTRLPEI_					0	0	0		ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.767822265625	2	498.297842	994.581131	0.4077	0.00020316	-0.0075522	-3.7632E-06	0.40015	0.00019939	498.2977364880623	57.883	0.43376	57.969	57.788	58.222	0.085617					24	15	2	0	0	0	0.25323	1	14040	14040		6.2058	0	1	144620			11213	2404	6368	6368	14360	14360					0.08362333339937322
GLQEQSSYRSF	11	Unmodified	_GLQEQSSYRSF_					0	0	0			REV__ENST00000417037.6_2_3:38183656-38183971:+|nuORF	REV__ENST00000417037.6_2_3:38183656-38183971:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7722473144531	3	434.542203	1300.60478	-0.19487	-8.4681E-05	3.9471	0.0017152	3.7522	0.0016305	434.54479615137683	17.929	1.4432	17.929	17.452	18.895	0					136	49	5	0	0	0	0.32563	1	1812	1812		17.049	1.31	1	1114200	+		11214	20827	6369	6369	14361	14361					-0.03349897684188363
GLQGQRVL	8	Unmodified	_GLQGQRVL_					0	0	0			REV__ENST00000525752.5_1_11:62600598-62601123:-|nuORF	REV__ENST00000525752.5_1_11:62600598-62601123:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2533874511719	2	435.761426	869.5083	-0.20797	-9.0627E-05	-0.17666	-7.6981E-05	-0.38463	-0.00016761	435.7614557442429	26.148	0.53946	26.148	25.9	26.44	0					33	18	2	0	0	0	0.38703	1	4243	4243		20.871	1.4322	1	206180	+		11215	21953	6370	6370	14362	14362					0.0683262433717573
GLQGQRVL	8	Unmodified	_GLQGQRVL_					0	0	0			REV__ENST00000525752.5_1_11:62600598-62601123:-|nuORF	REV__ENST00000525752.5_1_11:62600598-62601123:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.25347900390625	2	435.761426	869.5083	-0.058578	-2.5526E-05	-0.38637	-0.00016837	-0.44495	-0.00019389	435.761326909953	26.159	0.61155	26.137	25.945	26.556	-0.022236					38	21	3	0	0	0	0.42446	1	4296	4296		14.582	1.0738	1	175260	+		11216	21953	6370	6370	14363	14363					0.0683262433717573
GLQIPAIL	8	Unmodified	_GLQIPAIL_					0	0	0		ENST00000562118.1_1_16:68857288-68867399:+|nuORF;nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1	ENST00000562118.1_1_16:68857288-68867399:+|nuORF	ENST00000562118.1_1_16:68857288-68867399:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.7459411621094	2	412.765646	823.516739	0.20708	8.5477E-05	-1.522	-0.00062821	-1.3149	-0.00054273	412.7653803528503	80.131	1.3621	80.196	79.339	80.701	0.065094					65	52	2	0	0	0	0.34046	1	20765	20765		14.582	0	1	170760			11217	593	6371	6371	14364	14364					0.09792178253792372
GLQQLSALQ	9	Unmodified	_GLQQLSALQ_					0	0	0		ENSG00000163412|ENST00000425534|EIF4E3	ENSG00000163412|ENST00000425534|EIF4E3	ENSG00000163412|ENST00000425534|EIF4E3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.9747314453125	2	479.271824	956.529095	0.0029682	1.4226E-06	0.2	9.5854E-05	0.20297	9.7276E-05	479.2718428540241	38.385	0.56238	38.385	38.149	38.711	0					36	19	2	0	0	0	0.22596	1	8059	8059		6.7232	0	1	239940			11218	5676	6372	6372	14365	14365					0.04909169926179402
GLRAKWQKMF	10	Unmodified	_GLRAKWQKMF_					0	0	0			REV__ENSG00000056558|ENST00000373887|TRAF1	REV__ENSG00000056558|ENST00000373887|TRAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.5926208496094	3	422.237621	1263.69103	0.3299	0.0001393	-0.15881	-6.7055E-05	0.1711	7.2243E-05	422.23801298638915	48.541	0.69947	48.588	48.181	48.88	0.047241					41	25	3	0	0	0	0.318	1	11181	11181		1.9064	0.1641	1	207300	+		11219	13597	6373	6373	14366	14366					0.06973435407462603
GLRGLEEL	8	Unmodified	_GLRGLEEL_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.2792053222656	2	443.753267	885.491981	0.10698	4.7471E-05	-0.89275	-0.00039616	-0.78578	-0.00034869	443.75303095944344	33.598	0.93831	33.664	33.271	34.209	0.0667					76	33	4	0	0	0	0.34046	1	6460	6460		14.582	4.3983	1	1006200			11220	6503	6374	6374	14367	14367					0.04465498380432109
GLRGLEEL	8	Unmodified	_GLRGLEEL_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	443.753267	885.491981	0.53331	0.00023666	-0.86856	-0.00038543	-0.33525	-0.00014877	443.75282307343923	33.783	0.68172	33.783	33.512	34.193	0	0.073069	8.4305E-05	NaN	9.3474	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	886720			11221	6503	6374	6374							0.04465498380432109
GLRGLEEL	8	Unmodified	_GLRGLEEL_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	443.753267	885.491981	0.62637	0.00027796	-1.1094	-0.00049229	-0.48301	-0.00021434	443.7527508546761	33.616	0.63385	33.683	33.458	34.092	0.06636	-0.027366	-0.00012943	NaN	9.3474	54	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	904750			11222	6503	6374	6374							0.04465498380432109
GLRHRLPSG	9	Unmodified	_GLRHRLPSG_					0	0	0		ENST00000474451.5_1_20:3215527-3219798:-|nuORF	ENST00000474451.5_1_20:3215527-3219798:-|nuORF	ENST00000474451.5_1_20:3215527-3219798:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7910461425781	2	496.79105	991.567546	0.60567	0.00030089	0.12617	6.2678E-05	0.73183	0.00036357	496.7911621399605	41.48	1.1585	41.577	41.259	42.418	0.096626					80	44	2	0	0	0	0.14076	1	8913	8913		32.305	6.0373	1	4793600			11223	10923	6375	6375	14368	14368					0.07142520351362691
GLRIRKRAIAG	11	Unmodified	_GLRIRKRAIAG_					0	0	0			REV__ENSG00000172497|ENST00000307624|ACOT12	REV__ENSG00000172497|ENST00000307624|ACOT12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.6042785644531	3	404.266679	1209.77821	-0.038945	-1.5744E-05	-3.748	-0.0015152	-3.787	-0.001531	404.600713447891	52.517	0.4314	52.568	52.417	52.848	0.050575					16	15	2	0	0	0	0.33287	1	12291	12291		1.3296	0	1	113620	+		11224	17718	6376	6376	14369	14369					0.18170977673389643
GLRLYCQR	8	Unmodified	_GLRLYCQR_					0	0	0			REV__ENST00000313237.9_2_22:45312494-45405438:-|nuORF	REV__ENST00000313237.9_2_22:45312494-45405438:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7742614746094	2	504.774011	1007.53347	0.2779	0.00014028	-0.87607	-0.00044222	-0.59816	-0.00030194	504.7734770798633	41.684	0.91448	41.684	41.252	42.166	0					68	37	2	0	0	0	0.42758	1	8966	8966		13.508	0	1	2975800	+		11225	19916	6377	6377	14370	14370					0.030003558681073628
GLRNSLKTTQL	11	Unmodified	_GLRNSLKTTQL_					0	0	0		L1PA6_dup2662|chr6:160208729-160214880:-|1.2665007636170862|0.0221250906454286|5.84|510.0|37|1|sense;L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|37|1|sense	L1PA6_dup2662|chr6:160208729-160214880:-|1.2665007636170862|0.0221250906454286|5.84|510.0|37|1|sense	L1PA6_dup2662|chr6:160208729-160214880:-|1.2665007636170862|0.0221250906454286|5.84|510.0|37|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2437438964844	3	410.910338	1229.70918	0.0087688	3.6032E-06	1.464	0.00060157	1.4728	0.00060518	411.2449151717925	33.229	0.66341	33.283	32.931	33.594	0.054371					56	23	4	0	0	0	0.32798	1	6424	6424		6.2344	2.1177	1	319860			11226	12483	6378	6378	14371	14371					0.10351848863183477
GLRPFFPP	8	Unmodified	_GLRPFFPP_					0	0	0			REV__ENST00000429276.1_1_15:44038821-44039184:-|nuORF	REV__ENST00000429276.1_1_15:44038821-44039184:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2924499511719	2	465.763438	929.512323	-0.16912	-7.8769E-05	3.1826	0.0014824	3.0135	0.0014036	465.76638852854825	18.535	0.50088	18.535	18.363	18.864	0					39	17	3	0	0	0	0.34218	1	2034	2034		9.3474	0	1	47524	+		11227	20926	6379	6379	14372	14372					0.044747138308935064
GLRPHKAFYK	10	Unmodified	_GLRPHKAFYK_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.2364196777344	3	406.236497	1215.68766	-0.16434	-6.6762E-05	-0.17282	-7.0207E-05	-0.33717	-0.00013697	406.2363007833333	22.096	0.54133	22.096	21.819	22.36	0					39	19	3	0	0	0	0.29978	1	3027	3027		12.873	4.9272	1	138860	+		11228	16599	6380	6380	14373	14373					0.08844508625111303
GLRRYVRPFF	10	Unmodified	_GLRRYVRPFF_					0	0	0			REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.587158203125	3	437.58753	1309.74076	-0.16215	-7.0953E-05	-0.6052	-0.00026483	-0.76734	-0.00033578	437.58734263879745	16.488	0.79986	16.374	15.811	16.611	-0.11434					60	27	3	0	0	0	0.41512	1	1319	1319		0.69767	0.2894	1	144270	+		11229	20988	6381	6381	14374	14374					0.09827886407765618
GLRRYVRPFF	10	Unmodified	_GLRRYVRPFF_					0	0	0			REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	437.58753	1309.74076	-0.16215	-7.0953E-05	-0.6052	-0.00026483	-0.76734	-0.00033578	437.58734263879745	16.488	0.79986	16.374	15.811	16.611	-0.11434	0.061374	0.00039314	NaN	0.69767	60	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144270	+		11230	20988	6381	6381							0.09827886407765618
GLRRYVRPFF	10	Unmodified	_GLRRYVRPFF_					0	0	0			REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	437.58753	1309.74076	-0.044027	-1.9265E-05	-1.0733	-0.00046966	-1.1173	-0.00048893	437.58716231534584	16.343	0.83745	16.28	15.866	16.703	-0.062534	-0.032749	-0.00022136	NaN	0.69767	59	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174220	+		11231	20988	6381	6381							0.09827886407765618
GLRSDKATKL	10	Unmodified	_GLRSDKATKL_					0	0	0			REV__nc|ENSG00000205464|Q52LC2|ATP6AP1L	REV__nc|ENSG00000205464|Q52LC2|ATP6AP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.8250122070312	2	544.824755	1087.63496	0.61878	0.00033712	0.45144	0.00024595	1.0702	0.00058308	544.8246270997366	88.086	1.0894	88.086	87.794	88.883	0					136	53	3	0	0	0	0.31681	2	23277	23277;23466		18.373	1.4308	1	1184100	+		11232	23171	6382	6382	14375;14376	14375					0.09464505771643417
GLRSDKATKL	10	Unmodified	_GLRSDKATKL_					0	0	0			REV__nc|ENSG00000205464|Q52LC2|ATP6AP1L	REV__nc|ENSG00000205464|Q52LC2|ATP6AP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.8250732421875	2	544.824755	1087.63496	0.68227	0.00037172	0.48984	0.00026688	1.1721	0.00063859	544.8246054056643	88.175	0.99753	88.172	87.852	88.849	-0.0028458					124	47	3	0	0	0	0.37454	1	23206	23206		8.1555	0.24537	1	1048300	+		11233	23171	6382	6382	14377	14377					0.09464505771643417
GLRSYQQQTF	10	Unmodified	_GLRSYQQQTF_					0	0	0			REV__CDH23|p.N2695Kfs*9|1|0.17|ENSG00000107736|chr10:71805868-71805868|C/-|frameshift_variant	REV__CDH23|p.N2695Kfs*9|1|0.17|ENSG00000107736|chr10:71805868-71805868|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5699768066406	3	409.875405	1226.60439	-0.24763	-0.0001015	-0.6266	-0.00025683	-0.87424	-0.00035833	409.87502146337835	25.501	0.47631	25.469	25.237	25.713	-0.031408					34	16	3	0	0	0	0.32034	1	4118	4118		2.6312	1.039	1	115230	+		11234	13145	6383	6383	14378	14378					0.00014727386610502435
GLRWFRRFQ	9	Unmodified	_GLRWFRRFQ_					0	0	0		nc|ENSG00000251692|Q96A99-2|PTX4	nc|ENSG00000251692|Q96A99-2|PTX4	nc|ENSG00000251692|Q96A99-2|PTX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2279357910156	3	422.571991	1264.69414	0.36449	0.00015402	-0.7453	-0.00031494	-0.38081	-0.00016092	422.5714583126775	50.575	0.38467	50.575	50.353	50.738	0					24	13	3	0	0	0	0.25527	1	11743	11743		5.2969	1.4206	1	135890			11235	12976	6384	6384	14379	14379					0.07238446576502611
GLSDIILGK	9	Unmodified	_GLSDIILGK_					0	0	0		nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1;ENST00000595845.1_1_19:16552687-16582756:-|nuORF;ENST00000597559.5_1_19:16547732-16582756:-|nuORF;nc|ENSG00000127527|Q9UBC2-4|EPS15L1	nc|ENSG00000127527|Q9UBC2-3|EPS15L1	nc|ENSG00000127527|Q9UBC2-3|EPS15L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2795715332031	2	458.279118	914.543683	0.048196	2.2087E-05	0.39725	0.00018205	0.44545	0.00020414	458.279207677904	57.9	0.40717	57.9	57.693	58.1	0					23	14	2	0	0	0	0.016723	1	14024	14024		69.105	6.5322	1	277600			11236	3326	6385	6385	14380	14380					0.08299242074338053
GLSDIILGK	9	Unmodified	_GLSDIILGK_					0	0	0		nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1;ENST00000595845.1_1_19:16552687-16582756:-|nuORF;ENST00000597559.5_1_19:16547732-16582756:-|nuORF;nc|ENSG00000127527|Q9UBC2-4|EPS15L1	nc|ENSG00000127527|Q9UBC2-3|EPS15L1	nc|ENSG00000127527|Q9UBC2-3|EPS15L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.27960205078125	2	458.279118	914.543683	0.22407	0.00010269	0.48834	0.0002238	0.71242	0.00032649	458.27926758147305	57.991	0.3972	57.973	57.69	58.087	-0.017197					20	14	2	0	0	0	0.014206	1	14037	14037		72.968	6.5113	1	350830			11237	3326	6385	6385	14381	14381					0.08299242074338053
GLSDIILGK	9	Unmodified	_GLSDIILGK_					0	0	0		nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1;ENST00000595845.1_1_19:16552687-16582756:-|nuORF;ENST00000597559.5_1_19:16547732-16582756:-|nuORF;nc|ENSG00000127527|Q9UBC2-4|EPS15L1	nc|ENSG00000127527|Q9UBC2-3|EPS15L1	nc|ENSG00000127527|Q9UBC2-3|EPS15L1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	458.279118	914.543683	0.15072	6.9073E-05	-3.3047	-0.0015145	-3.154	-0.0014454	458.27702451256096	57.927	0.67813	58.012	57.63	58.308	0.085621	0.050299	-0.0033554	NaN	72.968	36	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330390			11238	3326	6385	6385							0.08299242074338053
GLSELTLPR	9	Unmodified	_GLSELTLPR_					0	0	0			REV__ENST00000354619.9_1_1:236433277-236445243:-|nuORF	REV__ENST00000354619.9_1_1:236433277-236445243:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2880554199219	2	493.287474	984.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.633	1	53.633	53.133	54.133	0								0	0	0	0.086509	1	12680	12680		49.933	6.0747	1		+		11239	20173	6386	6386	14382	14382					0.06749742960289495
GLSFPRLSVPR	11	Unmodified	_GLSFPRLSVPR_					0	0	0			REV__ENST00000304658.9_1_16:28222843-28223173:-|nuORF	REV__ENST00000304658.9_1_16:28222843-28223173:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.887939453125	3	410.24354	1227.70879	-0.26128	-0.00010719	-1.711	-0.00070193	-1.9723	-0.00080912	410.2427552272189	22.666	0.5234	22.666	22.446	22.969	0					28	17	2	0	0	0	0.33169	1	3234	3234		6.2344	2.358	1	71458	+		11240	19845	6387	6387	14383	14383					0.1040447393395425
GLSKRIHERSC	11	Unmodified	_GLSKRIHERSC_					0	0	0			REV__nc|ENSG00000173818|Q8N8Q3-5|ENDOV	REV__nc|ENSG00000173818|Q8N8Q3-5|ENDOV	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.9258117675781	3	429.231306	1284.67209	-0.31537	-0.00013537	-0.28095	-0.00012059	-0.59632	-0.00025596	429.5658447341196	24.681	0.3821	24.649	24.571	24.953	-0.031408					13	12	2	0	0	0	0.33202	1	3862	3862		5.0475	0.3316	1	90499	+		11241	17805	6388	6388	14384	14384					0.04113854045772314
GLSKTVRLLF	10	Unmodified	_GLSKTVRLLF_					0	0	0		ENST00000381337.6_1_16:20747308-20748193:-|nuORF	ENST00000381337.6_1_16:20747308-20748193:-|nuORF	ENST00000381337.6_1_16:20747308-20748193:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2793579101562	2	567.355691	1132.69683	-0.04321	-2.4516E-05	0.3584	0.00020334	0.31519	0.00017882	567.3558027343843	65.168	0.46049	65.257	65.086	65.547	0.088882					24	16	2	0	0	0	0.31629	1	16303	16303		10.074	0.6908	1	169380			11242	9997	6389	6389	14385	14385					0.13578857190805138
GLSKTVRLLF	10	Unmodified	_GLSKTVRLLF_					0	0	0		ENST00000381337.6_1_16:20747308-20748193:-|nuORF	ENST00000381337.6_1_16:20747308-20748193:-|nuORF	ENST00000381337.6_1_16:20747308-20748193:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	567.355691	1132.69683	0.054731	3.1052E-05	-0.11829	-6.7115E-05	-0.063564	-3.6063E-05	567.3555068122429	65.281	0.50092	65.281	65.076	65.577	0	0.0062077	-0.00029629	NaN	14.838	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194540			11243	9997	6389	6389							0.13578857190805138
GLSLQIKPKQT	11	Unmodified	_GLSLQIKPKQT_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2471008300781	3	404.915201	1211.72377	-0.062959	-2.5493E-05	-2.1327	-0.00086355	-2.1956	-0.00088904	404.91564620819906	16.984	2.2186	16.924	16.237	18.456	-0.060429					254	78	4	0	0	0	0.42863	1	1634	1634		7.4771	0.37534	1	1262300			11244	7854	6390	6390	14386	14386					0.12637921011310027
GLSLTHKRGPF	11	Unmodified	_GLSLTHKRGPF_					0	0	0			REV__ENST00000428783.1_1_13:32520203-32526732:+|nuORF	REV__ENST00000428783.1_1_13:32520203-32526732:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2467041015625	3	404.899773	1211.67749	-0.12876	-5.2135E-05	1.2925	0.00052334	1.1638	0.00047121	404.900593521765	17.524	0.34183	17.524	17.318	17.66	0					16	11	2	0	0	0	0.43831	1	1627	1627		5.0475	1.7279	1	13861	+		11245	20922	6391	6391	14387	14387					0.08011900899896318
GLSLTQSFLNR	11	Unmodified	_GLSLTQSFLNR_					0	0	0			REV__nc|ENSG00000068903|Q8IXJ6-2|SIRT2	REV__nc|ENSG00000068903|Q8IXJ6-2|SIRT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.3571166992188	2	618.340769	1234.66699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.881	1	96.881	96.381	97.381	0								0	0	0	0.37501	1	25897	25897		2.7352	0	1		+		11246	13708	6392	6392	14388	14388					0.05903873454803943
GLSQPASGTI	10	Unmodified	_GLSQPASGTI_					0	0	0			REV__ENSG00000179361|ENST00000346246|ARID3B	REV__ENSG00000179361|ENST00000346246|ARID3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7476501464844	2	465.748182	929.481811	0.1417	6.5997E-05	0.26031	0.00012124	0.40201	0.00018723	465.74816779860015	21.684	0.73137	21.584	21.073	21.804	-0.10034					67	25	4	0	0	0	0.33594	1	2827	2827		15.248	0.41021	1	332510	+		11247	18070	6393	6393	14389	14389					0.014248906552097651
GLSQRRRWR	9	Unmodified	_GLSQRRRWR_					0	0	0			REV__ENST00000482831.1_1_2:230450711-230451461:-|nuORF	REV__ENST00000482831.1_1_2:230450711-230451461:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2467041015625	3	405.570762	1213.69046	-0.11607	-4.7074E-05	-0.92539	-0.00037531	-1.0415	-0.00042239	405.5702800620234	17.406	0.38103	17.406	17.217	17.598	0					23	13	2	0	0	0	0.25417	1	1627	1627		5.2969	0.58097	1	47733	+		11248	21512	6394	6394	14390	14390					0.09215776802648179
GLSRCSQL	8	Unmodified	_GLSRCSQL_					0	0	0		ENSG00000279169|ENST00000625019|PRAMEF13;ENSG00000116721|ENST00000332296|PRAMEF1	ENSG00000279169|ENST00000625019|PRAMEF13	ENSG00000279169|ENST00000625019|PRAMEF13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.21343994140625	2	432.22382	862.433086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.018	1	52.018	51.518	52.518	0								0	0	0	0.34752	1	12182	12182		15.768	0	1				11249	2745	6395	6395	14391	14391					-0.003633011855527002
GLSRCSQL	8	Unmodified	_GLSRCSQL_					0	0	0		ENSG00000279169|ENST00000625019|PRAMEF13;ENSG00000116721|ENST00000332296|PRAMEF1	ENSG00000279169|ENST00000625019|PRAMEF13	ENSG00000279169|ENST00000625019|PRAMEF13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.21331787109375	2	432.22382	862.433086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.927	1	51.978	51.478	52.478	0.050575								0	0	0	0.34752	1	12154	12154		15.768	0	1				11250	2745	6395	6395	14392	14392					-0.003633011855527002
GLSRPELAVL	10	Unmodified	_GLSRPELAVL_					0	0	0			REV__ENST00000566735.1_1_16:19125342-19127388:+|nuORF	REV__ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2800903320312	2	527.816399	1053.61824	0.7908	0.0004174	-0.8494	-0.00044833	-0.0586	-3.093E-05	527.8161011139979	47.285	0.58032	47.285	47.053	47.634	0					33	20	2	0	0	0	0.30555	1	10713	10713		15.248	3.0078	1	614110	+		11251	18999	6396	6396	14393	14393					0.09358004885712035
GLSVGIIVV	9	Unmodified	_GLSVGIIVV_					0	0	0			REV__nc|ENSG00000165269|O14520-2|AQP7	REV__nc|ENSG00000165269|O14520-2|AQP7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.7786560058594	2	428.778754	855.542954	0.22762	9.7597E-05	-0.80767	-0.00034631	-0.58005	-0.00024871	428.77848453196066	78.675	0.76846	78.675	78.415	79.184	0					72	31	4	0	0	0	0.1659	1	20365	20365		28.487	0	1	491640	+		11252	17221	6397	6397	14394	14394					0.10940447425286948
GLSVLYHVS	9	Unmodified	_GLSVLYHVS_					0	0	0		ENST00000557925.1_1_19:8315741-8320784:+|nuORF	ENST00000557925.1_1_19:8315741-8320784:+|nuORF	ENST00000557925.1_1_19:8315741-8320784:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.3028564453125	2	487.768917	973.523281	-0.68001	-0.00033169	0.29522	0.000144	-0.38479	-0.00018769	487.76911577997504	35.153	0.65197	35.153	34.868	35.52	0					44	23	3	0	0	0	0.2451	1	7061	7061		15.847	3.3156	1	286510			11253	11870	6398	6398	14395	14395					0.03546071414530161
GLSWEFWLK	9	Unmodified	_GLSWEFWLK_					0	0	0		nc|ENSG00000156642|Q9Y639-4|NPTN	nc|ENSG00000156642|Q9Y639-4|NPTN	nc|ENSG00000156642|Q9Y639-4|NPTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3064575195312	2	583.305667	1164.59678	0.22739	0.00013264	0.27984	0.00016323	0.50723	0.00029587	583.3058529784336	72.983	1.1858	73.036	72.539	73.725	0.053833					112	42	4	0	0	0	0.2719	1	18556	18556		13.042	0.80181	1	634780			11254	12773	6399	6399	14396	14396					0.021066198569769767
GLSWWQEKEK	10	Unmodified	_GLSWWQEKEK_					0	0	0			REV__ENST00000360943.9_1_17:47004499-47005111:+|nuORF	REV__ENST00000360943.9_1_17:47004499-47005111:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8882751464844	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.058	1	27.058	26.558	27.558	0								0	0	0	0.3726	1	4541	4541		2.8433	0	1		+		11255	20272	6400	6400	14397	14397					0.0072018456346540916
GLSWWQEKEK	10	Unmodified	_GLSWWQEKEK_					0	0	0			REV__ENST00000360943.9_1_17:47004499-47005111:+|nuORF	REV__ENST00000360943.9_1_17:47004499-47005111:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8883056640625	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.046	1	27.025	26.525	27.525	-0.021412								0	0	0	0.36441	1	4540	4540		5.0475	2.7948	1		+		11256	20272	6400	6400	14398	14398					0.0072018456346540916
GLSWWQEKEK	10	Unmodified	_GLSWWQEKEK_					0	0	0			REV__ENST00000360943.9_1_17:47004499-47005111:+|nuORF	REV__ENST00000360943.9_1_17:47004499-47005111:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8879089355469	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.634	1	27.613	27.113	28.113	-0.021412								0	0	0	0.37044	1	4719	4719		3.3196	1.0669	1		+		11257	20272	6400	6400	14399	14399					0.0072018456346540916
GLTFRRDLYF	10	Unmodified	_GLTFRRDLYF_					0	0	0		SAG|p.S348Ifs*3|1|0.03|ENSG00000130561|chr2:233340473-233340474|-/A|frameshift_variant;SAG|p.S348Tfs*31|1|0.03|ENSG00000130561|chr2:233340472-233340473|-/AA|frameshift_variant;ENSG00000130561|ENST00000409110|SAG	SAG|p.S348Ifs*3|1|0.03|ENSG00000130561|chr2:233340473-233340474|-/A|frameshift_variant	SAG|p.S348Ifs*3|1|0.03|ENSG00000130561|chr2:233340473-233340474|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.7557067871094	3	429.899662	1286.67716	0.042405	1.823E-05	-0.1169	-5.0256E-05	-0.074497	-3.2026E-05	429.89941193463505	40.02	0.66329	40.119	39.868	40.532	0.099403					64	23	4	0	0	0	0.31538	1	8486	8486		12.873	2.5574	1	769620			11258	3487	6401	6401	14400	14400					0.04528481180045674
GLTFTTELLF	10	Unmodified	_GLTFTTELLF_					0	0	0		nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10;ENSG00000143199|ENST00000367851|ADCY10	nc|ENSG00000143199|Q96PN6-4|ADCY10	nc|ENSG00000143199|Q96PN6-4|ADCY10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2926025390625	2	571.310615	1140.60668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.186	1	84.186	83.686	84.686	0								0	0	0	0.36922	1	22057	22057		6.7232	1.4925	1				11259	4489	6402	6402	14401	14401					0.041997630717105494
GLTQKVNTPFL	11	Unmodified	_GLTQKVNTPFL_					0	0	0		ENSG00000182885|ENST00000333493|ADGRG3;ENST00000565579.5_1_16:57702259-57712261:+|nuORF	ENSG00000182885|ENST00000333493|ADGRG3	ENSG00000182885|ENST00000333493|ADGRG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.78515625	3	406.567801	1216.68157	-0.16221	-6.5949E-05	3.8631	0.0015706	3.7009	0.0015047	406.90355731279345	26.45	0.14343	26.411	26.29	26.433	-0.038671					6	4	2	0	0	0	0.32996	1	4336	4336		6.6235	4.8812	1	37602			11260	7330	6403	6403	14402	14402					0.0818994560295323
GLTQNSGDYK	10	Unmodified	_GLTQNSGDYK_					0	0	0		ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7593383789062	2	541.759278	1081.504	0.2915	0.00015792	0.44794	0.00024267	0.73944	0.0004006	541.7596515705545	27.512	0.48993	27.501	27.213	27.703	-0.01156					25	16	2	0	0	0	0.36786	1	4704	4704		9.3831	0	1	132230			11261	8760	6404	6404	14403	14403					-0.033489296670495605
GLTSGVSLAP	10	Unmodified	_GLTSGVSLAP_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2528076171875	2	451.2531	900.491647	0.25867	0.00011672	-0.49184	-0.00022194	-0.23317	-0.00010522	451.25281681451935	23.673	0.81865	23.634	23.231	24.049	-0.038927					64	28	3	0	0	0	0.18807	1	3556	3556		34.102	1.3168	1	312390			11262	5407	6405	6405	14404	14404					0.037420786605594
GLVGFPRSAER	11	Unmodified	_GLVGFPRSAER_					0	0	0		ENST00000599910.6_1_19:15544017-15544086:-|nuORF	ENST00000599910.6_1_19:15544017-15544086:-|nuORF	ENST00000599910.6_1_19:15544017-15544086:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.8482666015625	2	594.827829	1187.64111	0.17915	0.00010657	-0.20093	-0.00011952	-0.021779	-1.2955E-05	594.8277085880536	12.57	0.37564	12.474	12.356	12.731	-0.096607					31	12	4	0	0	0	0.47429	1	231	231		1.4819	0	1	318100			11263	12244	6406	6406	14405	14405					0.05479024003170707
GLVGVLVWWIP	11	Unmodified	_GLVGVLVWWIP_					0	0	0			REV__nc|ENSG00000005961|P08514-2|ITGA2B	REV__nc|ENSG00000005961|P08514-2|ITGA2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.58197021484375	3	413.581382	1237.72232	0.391	0.00016171	0.7058	0.00029191	1.0968	0.00045362	413.5817780102486	86.097	3.4873	86.088	84.794	88.281	-0.0090027					334	151	4	0	0	0	0.47429	1	22785	22785		1.4551	1.4551	1	1135900	+		11264	13348	6407	6407	14406	14406					0.11296331713219843
GLVHGRKGF	9	Unmodified	_GLVHGRKGF_					0	0	0			REV__nc|ENSG00000169641|Q86V48-2|LUZP1	REV__nc|ENSG00000169641|Q86V48-2|LUZP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.26629638671875	2	485.782693	969.550834	0.36554	0.00017757	-1.9212	-0.00093328	-1.5556	-0.0007557	485.78162703227486	37.951	0.58943	37.951	37.587	38.177	0					29	20	2	0	0	0	0.25526	1	7800	7800		1.8442	0	1	185920	+		11265	17529	6408	6408	14407	14407					0.06484019465415258
GLVHLFCSL	9	Unmodified	_GLVHLFCSL_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.25048828125	2	494.767863	987.521173	0.9009	0.00044574	-2.6013	-0.001287	-1.7004	-0.0008413	494.76643524116616	56.234	0.65333	56.215	55.75	56.403	-0.019077					36	23	2	0	0	0	0.23783	1	13531	13531		12.532	0	1	594310	+		11266	17183	6409	6409	14408	14408					0.026913194050735
GLVLLAAWRRR	11	Unmodified	_GLVLLAAWRRR_					0	0	0			REV__nc|ENSG00000109689|Q9P246-2|STIM2	REV__nc|ENSG00000109689|Q9P246-2|STIM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.2229919433594	3	437.610446	1309.80951	-0.22058	-9.6529E-05	1.0203	0.00044648	0.79969	0.00034995	437.6107595693895	18.232	0.6123	18.174	17.846	18.458	-0.058174					27	21	2	0	0	0	0.33346	1	1865	1865		0.50596	0	1	41828	+		11267	22937	6410	6410	14409	14409					0.16699550707471644
GLVPAAPPK	9	Unmodified	_GLVPAAPPK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.56280517578125	2	425.263271	848.511988	-0.81049	-0.00034467	0.65371	0.000278	-0.15678	-6.6672E-05	425.2634032782429	35.219	0.68275	35.219	34.892	35.575	0					46	24	3	0	0	0	0.21905	1	7040	7040		23.148	8.5667	1	305280			11268	638	6411	6411	14410	14410					0.08167294111035517
GLVPAAPPK	9	Unmodified	_GLVPAAPPK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.56298828125	2	425.263271	848.511988	-0.94955	-0.00040381	0.75609	0.00032154	-0.19346	-8.2271E-05	425.2634283717524	35.163	0.65835	35.241	34.837	35.495	0.077377					42	23	2	0	0	0	0.21905	1	7015	7015		23.148	8.5667	1	326700			11269	638	6411	6411	14411	14411					0.08167294111035517
GLVRRIGL	8	Unmodified	_GLVRRIGL_					0	0	0			REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.9091491699219	2	442.295436	882.57632	0.3697	0.00016352	0.49339	0.00021822	0.86309	0.00038174	442.2957316955716	32.535	0.33111	32.59	32.344	32.675	0.055309					24	11	3	0	0	0	0.33995	1	6169	6169		15.768	1.1865	1	191340	+		11270	21233	6412	6412	14412	14412					0.13033493987848033
GLVTRLHERP	10	Unmodified	_GLVTRLHERP_					0	0	0		ENSG00000251287|ENST00000425059|ALG1L2	ENSG00000251287|ENST00000425059|ALG1L2	ENSG00000251287|ENST00000425059|ALG1L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3432006835938	2	589.343646	1176.67274	-0.021871	-1.2889E-05	-0.56572	-0.0003334	-0.58759	-0.00034629	589.3432612519529	99.584	0.69617	99.584	99.139	99.835	0					171	90	2	0	0	0	0.32088	1	26664	26664		2.7352	2.7352	1	126330			11271	8598	6413	6413	14413	14413					0.09147016757128767
GLWAMLKT	8	Unmodified	_GLWAMLKT_					0	0	0		ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.9368591308594	2	460.257131	918.499709	-0.10089	-4.6434E-05	-0.93992	-0.00043261	-1.0408	-0.00047904	460.2566225265282	18.65	0.4856	18.532	18.325	18.81	-0.11739					32	16	3	0	0	0	0.3439	1	1989	1989		2.8892	0	1	32811			11272	1542	6414	6414	14414	14414					0.03719934376340461
GLWRRCITIPK	11	Unmodified	_GLWRRCITIPK_					0	0	0		ENST00000502980.1_1_3:98239917-98241743:-|nuORF;ENST00000513988.1_1_3:98237648-98240280:-|nuORF;ENST00000508503.5_1_3:98235702-98241699:-|nuORF;nc|ENSG00000080822|Q9NY35-2|CLDND1;ENSG00000080822|ENST00000341181|CLDND1;ENST00000507411.5_1_3:98235680-98240280:-|nuORF	ENST00000502980.1_1_3:98239917-98241743:-|nuORF	ENST00000502980.1_1_3:98239917-98241743:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.59930419921875	3	448.264058	1341.77035	0.27148	0.00012169	1.0823	0.00048515	1.3538	0.00060684	448.26455086659547	20.449	0.63609	20.449	20.136	20.772	0					64	22	4	0	0	0	0.33236	1	2512	2512		4.4062	1.3339	1	294920			11273	1167	6415	6415	14415	14415					0.11313082361607485
GLWRRCITIPK	11	Unmodified	_GLWRRCITIPK_					0	0	0		ENST00000502980.1_1_3:98239917-98241743:-|nuORF;ENST00000513988.1_1_3:98237648-98240280:-|nuORF;ENST00000508503.5_1_3:98235702-98241699:-|nuORF;nc|ENSG00000080822|Q9NY35-2|CLDND1;ENSG00000080822|ENST00000341181|CLDND1;ENST00000507411.5_1_3:98235680-98240280:-|nuORF	ENST00000502980.1_1_3:98239917-98241743:-|nuORF	ENST00000502980.1_1_3:98239917-98241743:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.2651672363281	3	448.264058	1341.77035	0.43746	0.0001961	1.0553	0.00047306	1.4928	0.00066915	448.26459362079686	20.652	0.58737	20.542	20.277	20.864	-0.11003					49	20	3	0	0	0	0.33056	1	2601	2601		8.7518	0.46535	1	318710			11274	1167	6415	6415	14416	14416					0.11313082361607485
GLWVTRAK	8	Unmodified	_GLWVTRAK_					0	0	0			REV__nc|ENSG00000166377|O43861-2|ATP9B	REV__nc|ENSG00000166377|O43861-2|ATP9B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.23687744140625	2	465.779619	929.544686	0.061051	2.8436E-05	-2.6685	-0.0012429	-2.6075	-0.0012145	465.7774629040869	19.848	0.66308	19.732	19.405	20.068	-0.11592					60	22	4	0	0	0	0.34272	1	2460	2460		7.9102	0.62092	1	96806	+		11275	17315	6416	6416	14417	14417					0.07709501233887295
GLYPNLIQVRQ	11	Unmodified	_GLYPNLIQVRQ_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8822021484375	3	434.250583	1299.72992	-0.24936	-0.00010829	-1.3855	-0.00060166	-1.6349	-0.00070994	434.24947153264026	23.703	0.74543	23.703	23.448	24.194	0					53	25	3	0	0	0	0.3322	1	3527	3527		4.7159	0.83959	1	153950			11276	3611	6417	6417	14418	14418					0.09204439242876106
GLYPNLIQVRQ	11	Unmodified	_GLYPNLIQVRQ_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.8821105957031	3	434.250583	1299.72992	-0.097582	-4.2375E-05	-0.56963	-0.00024736	-0.66721	-0.00028973	434.250172997785	23.798	0.86591	23.725	23.368	24.234	-0.072559					59	29	3	0	0	0	0.3322	1	3560	3560		4.7159	2.2811	1	141540			11277	3611	6417	6417	14419	14419					0.09204439242876106
GLYWICGHR	9	Unmodified	_GLYWICGHR_					0	0	0		Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|98|3|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|98|3|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|98|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7749633789062	2	552.774011	1103.53347	0.042419	2.3448E-05	1.6539	0.00091423	1.6963	0.00093768	552.774928605105	13.181	0.29597	13.082	12.953	13.249	-0.099291					26	9	4	0	0	0	0.31038	1	362	362		7.2892	2.0586	1	129150			11278	12375	6418	6418	14420	14420					-0.014156441319073565
GLYYFTKQKN	10	Unmodified	_GLYYFTKQKN_					0	0	0			REV__ENSG00000146350|ENST00000398212|TBC1D32	REV__ENSG00000146350|ENST00000398212|TBC1D32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.9347839355469	3	421.224034	1260.65027	0.088509	3.7282E-05	1.6897	0.00071173	1.7782	0.00074901	421.5598269598028	32.172	0.42424	32.213	32.031	32.456	0.040989					21	14	3	0	0	0	0.32051	1	6056	6056		3.8763	0.28927	1	61314	+		11279	16343	6419	6419	14421	14421					0.030373725688832565
GMKPRGRPNA	10	Unmodified	_GMKPRGRPNA_					0	0	0			REV__ACIN1|p.P817Hfs*53|1|0.19|ENSG00000100813|chr14:23065992-23065998|GATTTGG/-|frameshift_variant	REV__ACIN1|p.P817Hfs*53|1|0.19|ENSG00000100813|chr14:23065992-23065998|GATTTGG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2955932617188	2	542.295642	1082.57673	0.163	8.8394E-05	-0.57381	-0.00031118	-0.41081	-0.00022278	542.2954229502792	13.571	0.66283	13.472	13.276	13.938	-0.099291					52	23	4	0	0	0	0.38233	1	462	462		6.7232	0.51738	1	342650	+		11280	13072	6420	6420	14422	14422					0.03874545645385297
GMPCGVYTPR	10	Unmodified	_GMPCGVYTPR_					0	0	0		ENSG00000141753|ENST00000269593|IGFBP4	ENSG00000141753|ENST00000269593|IGFBP4	ENSG00000141753|ENST00000269593|IGFBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7542114257812	2	540.751887	1079.48922	0.61669	0.00033347	1.54	0.00083275	2.1567	0.0011662	540.7530341700334	23.752	0.59919	23.713	23.339	23.939	-0.038927					30	20	3	0	0	0	0.35637	1	3560	3560		11.495	1.4208	1	59146			11281	4410	6421	6421	14423	14423					-0.047344163404204664
GMPCGVYTPR	10	Unmodified	_GMPCGVYTPR_					0	0	0		ENSG00000141753|ENST00000269593|IGFBP4	ENSG00000141753|ENST00000269593|IGFBP4	ENSG00000141753|ENST00000269593|IGFBP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	540.751887	1079.48922	0.31266	0.00016907	2.1667	0.0011717	2.4794	0.0013407	540.753053311612	23.649	0.52137	23.649	23.336	23.857	0	-0.013098	0.00025304	NaN	11.495	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57652			11282	4410	6421	6421							-0.047344163404204664
GMPCGVYTPR	10	Unmodified	_GMPCGVYTPR_					0	0	0		ENSG00000141753|ENST00000269593|IGFBP4	ENSG00000141753|ENST00000269593|IGFBP4	ENSG00000141753|ENST00000269593|IGFBP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	540.751887	1079.48922	0.38213	0.00020664	1.9355	0.0010466	2.3176	0.0012533	540.752933516364	23.696	0.56705	23.624	23.368	23.935	-0.072559	-0.03789	2.9463E-06	NaN	11.495	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64640			11283	4410	6421	6421							-0.047344163404204664
GMRRSPDV	8	Unmodified	_GMRRSPDV_					0	0	0		ENSG00000183780|ENST00000366618|SLC35F3	ENSG00000183780|ENST00000366618|SLC35F3	ENSG00000183780|ENST00000366618|SLC35F3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.25048828125	2	459.234719	916.454884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.697	1	23.697	23.197	24.197	0								0	0	0	0.37183	1	3526	3526		4.756	0	1				11284	7407	6422	6422	14424	14424					-0.0066849643698105865
GMTYDALHVF	10	Unmodified	_GMTYDALHVF_					0	0	0		nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.271240234375	2	577.270967	1152.52738	0.32212	0.00018595	-0.22547	-0.00013016	0.096653	5.5795E-05	577.2708683179701	50.082	1.0254	50.082	49.793	50.818	0					101	37	4	0	0	0	0.2892	1	11664	11664		21.747	1.293	1	2751800			11285	1656	6423	6423	14425	14425					-0.04278207154084157
GMYQEKFLF	9	Unmodified	_GMYQEKFLF_					0	0	0		ENST00000502732.5_1_1:179076360-179076552:-|nuORF	ENST00000502732.5_1_1:179076360-179076552:-|nuORF	ENST00000502732.5_1_1:179076360-179076552:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.7454833984375	2	581.78371	1161.55287	0.11633	6.7681E-05	-3.9074	-0.0022732	-3.791	-0.0022056	581.7813150273348	25.9	0.26048	25.9	25.846	26.106	0					11	8	2	0	0	0	0.26031	1	4182	4182		3.5965	0.60125	1	83449			11286	11279	6424	6424	14426	14426					-0.021447326316547333
GNELLAKACAV	11	Unmodified	_GNELLAKACAV_					0	0	0			REV__ENSG00000165192|ENST00000480796|ASB11	REV__ENSG00000165192|ENST00000480796|ASB11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.792236328125	2	544.792066	1087.56958	0.0666	3.6283E-05	1.5594	0.00084957	1.626	0.00088585	544.7923319203933	111.94	0.70756	111.94	111.78	112.48	0					149	88	2	0	0	0	0.45108	1	29171	29171		4.5289	0.19963	1	65811	+		11287	17216	6425	6425	14427	14427					0.029297682542846815
GNELLAKACAV	11	Unmodified	_GNELLAKACAV_					0	0	0			REV__ENSG00000165192|ENST00000480796|ASB11	REV__ENSG00000165192|ENST00000480796|ASB11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7921752929688	2	544.792066	1087.56958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.4	1	118.4	117.9	118.9	0								0	0	0	0.37609	1	30587	30587		2.4985	0.43874	1		+		11288	17216	6425	6425	14428	14428					0.029297682542846815
GNELLAKACAV	11	Unmodified	_GNELLAKACAV_					0	0	0			REV__ENSG00000165192|ENST00000480796|ASB11	REV__ENSG00000165192|ENST00000480796|ASB11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7921752929688	2	544.792066	1087.56958	0.55314	0.00030134	1.1133	0.00060652	1.6664	0.00090786	544.7918675724516	113.67	0.38374	113.68	113.47	113.85	0.014832					64	47	2	0	0	0	0.46655	1	29582	29582		2.4985	0.43874	1	36984	+		11289	17216	6425	6425	14429	14429					0.029297682542846815
GNELLAKACAV	11	Unmodified	_GNELLAKACAV_					0	0	0			REV__ENSG00000165192|ENST00000480796|ASB11	REV__ENSG00000165192|ENST00000480796|ASB11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7921142578125	2	544.792066	1087.56958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.21	1	113.22	112.72	113.72	0.014824								0	0	0	0.36685	1	29456	29456		4.5289	0.58447	1		+		11290	17216	6425	6425	14430	14430					0.029297682542846815
GNELLAKACAV	11	Unmodified	_GNELLAKACAV_					0	0	0			REV__ENSG00000165192|ENST00000480796|ASB11	REV__ENSG00000165192|ENST00000480796|ASB11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.792236328125	2	544.792066	1087.56958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.05	1	118.07	117.57	118.57	0.023476								0	0	0	0.36839	1	30582	30582		4.1895	1.4543	1		+		11291	17216	6425	6425	14431	14431					0.029297682542846815
GNELLAKACAV	11	Unmodified	_GNELLAKACAV_					0	0	0			REV__ENSG00000165192|ENST00000480796|ASB11	REV__ENSG00000165192|ENST00000480796|ASB11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.792236328125	2	544.792066	1087.56958	0.55338	0.00030148	1.1318	0.00061657	1.6851	0.00091805	544.7917938716707	117.51	0.78748	117.53	117.33	118.12	0.023476					134	97	2	0	0	0	0.33218	1	30582	30582		4.1895	1.4543	1	22069	+		11292	17216	6425	6425	14432	14432					0.029297682542846815
GNFAVQFF	8	Unmodified	_GNFAVQFF_					0	0	0			REV__ENSG00000158481|ENST00000368170|CD1C	REV__ENSG00000158481|ENST00000368170|CD1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7980041503906	2	465.229428	928.444303	0.33069	0.00015385	-1.2034	-0.00055988	-0.87275	-0.00040603	465.22891578432547	38.767	1.1556	38.866	38.467	39.622	0.099407					56	41	2	0	0	0	0.34046	1	8222	8222		14.582	1.0738	1	178930	+		11293	16815	6426	6426	14433	14433					-0.02278155819760741
GNFRKRLSTF	10	Unmodified	_GNFRKRLSTF_					0	0	0		ENSG00000173198|ENST00000373304|CYSLTR1	ENSG00000173198|ENST00000373304|CYSLTR1	ENSG00000173198|ENST00000373304|CYSLTR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.9048156738281	3	409.231523	1224.67274	0.055582	2.2746E-05	3.9469	0.0016152	4.0025	0.0016379	409.23263132722025	35.842	0.26421	35.842	35.773	36.037	0					12	9	2	0	0	0	0.31994	1	7222	7222		5.4027	3.3167	1	71780			11294	6701	6427	6427	14434	14434					0.06939016757110039
GNGKLEFDEF	10	Unmodified	_GNGKLEFDEF_					0	0	0		nc|ENSG00000135773|O14815-2|CAPN9;ENSG00000135773|ENST00000271971|CAPN9	nc|ENSG00000135773|O14815-2|CAPN9	nc|ENSG00000135773|O14815-2|CAPN9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2821655273438	2	578.269478	1154.5244	0.46741	0.00027029	-0.78414	-0.00045345	-0.31673	-0.00018316	578.2690411421613	77.243	0.92079	77.299	76.758	77.679	0.055412					44	32	2	0	0	0	0.27059	1	19935	19935		24.021	1.2843	1	174720			11295	3902	6428	6428	14435	14435					-0.04667759007247696
GNIFVFNIF	9	Unmodified	_GNIFVFNIF_					0	0	0		ENSG00000206530|ENST00000393845|CFAP44;nc|ENSG00000206530|Q96MT7-1|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8181762695312	2	535.78711	1069.55967	0.41283	0.00022119	-2.0635	-0.0011056	-1.6506	-0.00088438	535.7847010220412	88.92	0.24316	89.011	88.83	89.073	0.090561					13	9	2	0	0	0	0.25417	1	23495	23495		4.756	0	1	44310			11296	8322	6429	6429	14436	14436					0.027669483112276794
GNRGLVCPISL	11	Unmodified	_GNRGLVCPISL_					0	0	0			REV__ENSG00000166796|ENST00000541669|LDHC	REV__ENSG00000166796|ENST00000541669|LDHC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.2839965820312	2	564.813333	1127.61211	0.10426	5.8889E-05	0.92932	0.00052489	1.0336	0.00058378	564.8137539298241	51.804	0.45936	51.805	51.658	52.117	0.0010605					22	16	2	0	0	0	0.30789	1	12072	12072		22.736	7.898	1	260530	+		11297	17340	6430	6430	14437	14437					0.05341163382558989
GNSKRPHQWT	10	Unmodified	_GNSKRPHQWT_					0	0	0			REV__nc|ENSG00000042781|O75445-3|USH2A	REV__nc|ENSG00000042781|O75445-3|USH2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.73956298828125	3	404.207377	1209.6003	-0.24055	-9.7234E-05	0.98848	0.00039955	0.74793	0.00030232	404.20741592470443	76.268	1.076	76.268	75.649	76.725	0					93	38	4	0	0	0	0.31994	1	19453	19453		3.0723	0	1	533120	+		11298	22882	6431	6431	14438	14438					0.003886826835696411
GNYLRTSPAS	10	Unmodified	_GNYLRTSPAS_					0	0	0		nc|ENSG00000083828|Q9NXT0-2|ZNF586	nc|ENSG00000083828|Q9NXT0-2|ZNF586	nc|ENSG00000083828|Q9NXT0-2|ZNF586	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.265869140625	2	533.269813	1064.52507	0.28511	0.00015204	-1.9147	-0.0010211	-1.6296	-0.00086901	533.268605032426	15.814	0.85396	15.814	15.413	16.267	0					61	29	3	0	0	0	0.35231	1	1108	1108		12.241	0	1	231610			11299	12597	6432	6432	14439	14439					-0.004609195675584488
GPAGLLMGQK	10	Unmodified	_GPAGLLMGQK_					0	0	0		ENSG00000163884|ENST00000296233|KLF15	ENSG00000163884|ENST00000296233|KLF15	ENSG00000163884|ENST00000296233|KLF15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.28533935546875	2	486.27077	970.526987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.508	1	34.585	34.085	35.085	0.077377								0	0	0	0.34495	1	6806	6806		16.942	1.6938	1				11300	5751	6433	6433	14440	14440					0.0405441791673411
GPAIERMGL	9	Oxidation (M)	_GPAIERM(Oxidation (M))GL_		GPAIERM(1)GL		GPAIERM(62)GL	0	0	1		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.25299072265625	2	480.252577	958.490601	0.40361	0.00019383	-0.33604	-0.00016139	0.067564	3.2448E-05	480.25243531562273	32.177	0.76243	32.177	31.9	32.662	0					63	27	3	0	0	0	0.026579	2	6085	6085;6131		61.602	25.475	1	682920			11301	1493	6434	6434	14441;14442	14441		186			0.009695410200265542
GPAIERMGL	9	Oxidation (M)	_GPAIERM(Oxidation (M))GL_		GPAIERM(1)GL		GPAIERM(80)GL	0	0	1		ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2525329589844	2	480.252577	958.490601	0.54294	0.00026075	-0.21062	-0.00010115	0.33231	0.00015959	480.25243875758423	32.171	0.69517	32.213	31.909	32.605	0.042362					60	24	3	0	0	0	0.0098873	1	6086	6086		79.596	35.738	1	601220			11302	1493	6434	6434	14443	14443		186			0.009695410200265542
GPALGRSFL	9	Unmodified	_GPALGRSFL_					0	0	0		ENSG00000125726|ENST00000245903|CD70;nc|ENSG00000125726|P32970-2|CD70;chr19:6583478-6586154|456|12.57|0.07|7.49|-|ENST00000423145|CD70,CD70	ENSG00000125726|ENST00000245903|CD70	ENSG00000125726|ENST00000245903|CD70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.26324462890625	2	459.263802	916.513051	0.021785	1.0005E-05	0.090913	4.1753E-05	0.1127	5.1758E-05	459.2636411207047	48.961	0.52163	48.993	48.774	49.295	0.032043					36	18	3	0	0	0	0.026579	1	11233	11233		61.602	21.153	1	443730			11303	144	6435	6435	14444	14444					0.051455084799385986
GPALGRSFL	9	Unmodified	_GPALGRSFL_					0	0	0		ENSG00000125726|ENST00000245903|CD70;nc|ENSG00000125726|P32970-2|CD70;chr19:6583478-6586154|456|12.57|0.07|7.49|-|ENST00000423145|CD70,CD70	ENSG00000125726|ENST00000245903|CD70	ENSG00000125726|ENST00000245903|CD70	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	459.263802	916.513051	0.17289	7.9401E-05	-0.29058	-0.00013345	-0.11769	-5.4053E-05	459.2636240512023	49	0.49407	49	48.798	49.292	0	-0.010174	-6.1368E-05	NaN	61.602	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	559000			11304	144	6435	6435							0.051455084799385986
GPAPRVLSL	9	Unmodified	_GPAPRVLSL_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;YLPM1|p.D2015Vfs*40|1|0.15|ENSG00000119596|chr14:74821070-74821070|A/-|frameshift_variant;ENSG00000119596|ENST00000325680|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.279541015625	2	455.279452	908.544351	0.2054	9.3513E-05	0.057761	2.6297E-05	0.26316	0.00011981	455.2793906188761	46.997	0.59171	47.049	46.679	47.271	0.052574					32	21	2	0	0	0	0.066761	1	10649	10649		65.235	7.7637	1	596240			11305	12678;2886	6436	6436	14445	14445					0.08642081514040001
GPAPRVLSL	9	Unmodified	_GPAPRVLSL_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;YLPM1|p.D2015Vfs*40|1|0.15|ENSG00000119596|chr14:74821070-74821070|A/-|frameshift_variant;ENSG00000119596|ENST00000325680|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	455.279452	908.544351	0.45581	0.00020752	0.033733	1.5358E-05	0.48954	0.00022288	455.27938707233864	47.005	0.61965	47.005	46.76	47.38	0	-0.013395	0.00017601	NaN	65.235	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	488130			11306	12678;2886	6436	6436							0.08642081514040001
GPAPRVLSL	9	Unmodified	_GPAPRVLSL_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;YLPM1|p.D2015Vfs*40|1|0.15|ENSG00000119596|chr14:74821070-74821070|A/-|frameshift_variant;ENSG00000119596|ENST00000325680|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	455.279452	908.544351	0.64025	0.00029149	-0.52352	-0.00023835	0.11673	5.3146E-05	455.2791622845391	46.946	0.64545	47	46.796	47.442	0.054371	-0.017682	-0.00033141	NaN	65.235	31	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	582780			11307	12678;2886	6436	6436							0.08642081514040001
GPAPVGRFF	9	Unmodified	_GPAPVGRFF_					0	0	0		ENSG00000172922|ENST00000308418|RNASEH2C;ENST00000528220.1_1_11:65487749-65488268:-|nuORF	ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7295227050781	2	474.25852	946.502486	0.22991	0.00010903	2.0041	0.00095044	2.234	0.0010595	474.25935951583534	51.485	0.62431	51.531	51.245	51.87	0.046577					50	22	4	0	0	0	0.24913	1	11946	11946		12.532	9.6423	1	1388600			11308	6674	6437	6437	14446	14446					0.027095258255144472
GPARAGSVV	9	Unmodified	_GPARAGSVV_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25;ENST00000593595.1_1_19:50321571-50321933:+|nuORF;ENST00000593636.1_1_19:50321571-50322554:+|nuORF	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.23248291015625	2	407.232502	812.450451	-0.28028	-0.00011414	-0.74329	-0.00030269	-1.0236	-0.00041683	407.23273260401504	19.077	1.8808	19.077	18.024	19.905	0					145	66	5	0	0	0	0.018449	2	2120	2120;2167		66.457	32.354	1	309740			11309	1941	6438	6438	14447;14448	14447					0.036723624117598774
GPARAGSVV	9	Unmodified	_GPARAGSVV_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25;ENST00000593595.1_1_19:50321571-50321933:+|nuORF;ENST00000593636.1_1_19:50321571-50322554:+|nuORF	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.23248291015625	2	407.232502	812.450451	-0.15837	-6.4495E-05	-0.23846	-9.711E-05	-0.39684	-0.0001616	407.2327134085955	19.19	1.7742	19.074	18.066	19.84	-0.11592					126	61	4	0	0	0	0.014888	2	2163	2163;2212		71.922	29.828	1	344640			11310	1941	6438	6438	14449;14450	14449					0.036723624117598774
GPARAGSVV	9	Unmodified	_GPARAGSVV_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25;ENST00000593595.1_1_19:50321571-50321933:+|nuORF;ENST00000593636.1_1_19:50321571-50322554:+|nuORF	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2325439453125	2	407.232502	812.450451	-0.1593	-6.4872E-05	0.58076	0.0002365	0.42146	0.00017163	407.2326591296812	19.143	1.7566	19.087	18.089	19.846	-0.055693					103	61	3	0	0	0	0.014888	2	2139	2139;2193		71.922	25.901	1	338310			11311	1941	6438	6438	14451;14452	14451					0.036723624117598774
GPARTARP	8	Unmodified	_GPARTARP_					0	0	0		ENST00000487413.1_1_3:50453473-50541058:-|nuORF;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2	REV__ENST00000311922.3_1_8:126442809-126443172:+|nuORF;ENSG00000007402|ENST00000424201|CACNA2D2	REV__ENST00000311922.3_1_8:126442809-126443172:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.23797607421875	2	413.238119	824.461684	0.0048023	1.9845E-06	0.038511	1.5914E-05	0.043314	1.7899E-05	413.23804298304435	67.148	3.9637	67.148	65.768	69.732	0					217	142	2	0	0	0	0.45307	1	16665	16665		4.756	0	1	492550			11312	19905;381	6439	6439	14453	14453					0.04243184505901354
GPASRVSQL	9	Unmodified	_GPASRVSQL_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.756103515625	2	457.756341	913.498129	-0.18768	-8.5913E-05	-0.033446	-1.531E-05	-0.22113	-0.00010122	457.7561885314089	27.769	0.8278	27.769	27.266	28.094	0					46	28	2	0	0	0	0.038291	1	4776	4776		57.249	22.847	1	259240			11313	3273	6440	6440	14454	14454					0.03792016611953386
GPASRVSQL	9	Unmodified	_GPASRVSQL_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.75628662109375	2	457.756341	913.498129	-0.22321	-0.00010217	0.19226	8.8008E-05	-0.030948	-1.4167E-05	457.75626690792586	27.723	0.8264	27.712	27.213	28.039	-0.01156					53	28	3	0	0	0	0.043711	1	4763	4763		55.235	19.108	1	292830			11314	3273	6440	6440	14455	14455					0.03792016611953386
GPAVRLPVS	9	Unmodified	_GPAVRLPVS_					0	0	0		ENST00000564194.5_1_15:74211723-74212261:-|nuORF;ENST00000568229.5_1_15:74204592-74212261:-|nuORF;ENST00000567644.5_1_15:74208706-74212300:-|nuORF	ENST00000564194.5_1_15:74211723-74212261:-|nuORF	ENST00000564194.5_1_15:74211723-74212261:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.7877197265625	2	448.271627	894.528701	0.30623	0.00013727	-0.62399	-0.00027972	-0.31776	-0.00014244	448.2712947207956	35.661	0.60069	35.661	35.412	36.012	0					34	21	2	0	0	0	0.25431	1	7248	7248		9.3831	5.0539	1	450950			11315	11945	6441	6441	14456	14456					0.07721794996996323
GPDEAKIKALL	11	Unmodified	_GPDEAKIKALL_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;chr6:85641451-85641990|481|13.22|0.81|4.04|-|ENST00000677059|SYNCRIP,SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000125944|O43390-4|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;ENST00000434910.1_1_20:6194638-6195010:+|nuORF	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3038330078125	2	577.842613	1153.67067	0.36211	0.00020924	0.70406	0.00040684	1.0662	0.00061608	577.8432200938511	46.939	0.48037	46.992	46.846	47.326	0.052574					23	17	2	0	0	0	0.27737	1	10599	10599		34.222	11.485	1	353800			11316	174	6442	6442	14457	14457					0.09998543228653034
GPDEAKIKALL	11	Unmodified	_GPDEAKIKALL_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;chr6:85641451-85641990|481|13.22|0.81|4.04|-|ENST00000677059|SYNCRIP,SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000125944|O43390-4|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;ENST00000434910.1_1_20:6194638-6195010:+|nuORF	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	577.842613	1153.67067	0.79098	0.00045706	0.83352	0.00048164	1.6245	0.00093871	577.8431042844948	46.994	0.37825	47.049	46.877	47.256	0.054371	0.015866	6.9381E-05	NaN	22.775	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455490			11317	174	6442	6442							0.09998543228653034
GPDSSRLTSRL	11	Unmodified	_GPDSSRLTSRL_					0	0	0		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1;nc|ENSG00000138079|Q07837-4|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8206787109375	2	594.820201	1187.62585	0.24924	0.00014826	0.41292	0.00024561	0.66216	0.00039387	594.8204749493121	31.407	0.77928	31.449	31.13	31.909	0.042364					78	27	4	0	0	0	1.2519E-05	2	5873	5873;5919		121.93	74.335	1	3561000			11318	4114	6443	6443	14458;14459	14458					0.03954112415317468
GPDSSRLTSRL	11	Unmodified	_GPDSSRLTSRL_					0	0	0		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1;nc|ENSG00000138079|Q07837-4|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8206176757812	2	594.820201	1187.62585	0.36382	0.00021641	0.2717	0.00016161	0.63553	0.00037802	594.8204455422247	31.294	0.72996	31.335	31.042	31.772	0.040989					80	26	5	0	0	0	1.11E-12	2	5840	5840;5888		164.85	121.08	1	3458100			11319	4114	6443	6443	14460;14461	14460					0.03954112415317468
GPDSSRLTSRL	11	Unmodified	_GPDSSRLTSRL_					0	0	0		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1;nc|ENSG00000138079|Q07837-4|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	594.820201	1187.62585	0.25335	0.00015069	0.50585	0.00030089	0.75919	0.00045158	594.8205338169741	31.418	0.86249	31.418	31.09	31.953	0	0.017333	9.6641E-05	NaN	164.85	78	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3621200			11320	4114	6443	6443							0.03954112415317468
GPDTKRAKL	9	Unmodified	_GPDTKRAKL_					0	0	0		nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2928771972656	2	493.293091	984.571629	0.056176	2.7711E-05	-0.2582	-0.00012737	-0.20202	-9.9656E-05	493.2929269528234	13.751	0.45677	13.751	13.567	14.024	0					36	15	3	0	0	0	0.001957	2	507	507;555		110.55	82.924	1	524240			11321	4433	6444	6444	14462;14463	14462					0.07872565054424285
GPDTKRAKL	9	Unmodified	_GPDTKRAKL_					0	0	0		nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.2926330566406	2	493.293091	984.571629	0.0049687	2.451E-06	-0.18814	-9.2808E-05	-0.18317	-9.0357E-05	493.2929228735243	13.833	0.45311	13.729	13.538	13.991	-0.10466					49	15	4	0	0	0	0.015027	2	532	532;579		71.708	53.562	1	520770			11322	4433	6444	6444	14464;14465	14464					0.07872565054424285
GPDTKRAKL	9	Unmodified	_GPDTKRAKL_					0	0	0		nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.2927551269531	2	493.293091	984.571629	-0.012165	-6.001E-06	-0.16218	-8.0002E-05	-0.17434	-8.6003E-05	493.2929183493175	13.829	0.4051	13.763	13.602	14.007	-0.066068					39	13	4	0	0	0	0.022205	1	535	535		63.227	42.813	1	533160			11323	4433	6444	6444	14466	14466					0.07872565054424285
GPEEVNRLT	9	Unmodified	_GPEEVNRLT_					0	0	0		ENST00000462558.5_1_7:97937677-98030347:-|nuORF;ENSG00000006453|ENST00000005260|BAIAP2L1	ENST00000462558.5_1_7:97937677-98030347:-|nuORF	ENST00000462558.5_1_7:97937677-98030347:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2801818847656	2	507.764363	1013.51417	0.0092496	4.6966E-06	-0.55426	-0.00028144	-0.54501	-0.00027674	507.7641540324558	14.38	0.53806	14.38	14.191	14.729	0					34	18	3	0	0	0	0.24581	1	679	679		16.942	0	1	147290			11324	358	6445	6445	14467	14467					0.007956780581821477
GPEEVNRLT	9	Unmodified	_GPEEVNRLT_					0	0	0		ENST00000462558.5_1_7:97937677-98030347:-|nuORF;ENSG00000006453|ENST00000005260|BAIAP2L1	ENST00000462558.5_1_7:97937677-98030347:-|nuORF	ENST00000462558.5_1_7:97937677-98030347:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.280029296875	2	507.764363	1013.51417	-0.011892	-6.0384E-06	-0.61463	-0.00031209	-0.62652	-0.00031812	507.76420302645295	14.495	0.52038	14.39	14.131	14.651	-0.10466					37	17	3	0	0	0	0.28128	1	724	724		11.64	0	1	153000			11325	358	6445	6445	14468	14468					0.007956780581821477
GPEHCPDWPF	10	Unmodified	_GPEHCPDWPF_					0	0	0		ENST00000383233.7_1_18:20964997-20979558:-|nuORF	ENST00000383233.7_1_18:20964997-20979558:-|nuORF	ENST00000383233.7_1_18:20964997-20979558:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.7459106445312	2	592.745116	1183.47568	0.36938	0.00021895	0.66264	0.00039278	1.032	0.00061173	592.7454348846737	69.96	0.58736	70.026	69.797	70.384	0.066048					58	20	4	0	0	0	0.39935	1	17745	17745		3.5965	3.5965	1	569980			11326	10013	6446	6446	14469	14469					-0.10871950847990774
GPEKTRSQL	9	Unmodified	_GPEKTRSQL_					0	0	0		ENST00000594221.5_1_19:7706941-7707474:+|nuORF;nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2	ENST00000594221.5_1_19:7706941-7707474:+|nuORF	ENST00000594221.5_1_19:7706941-7707474:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2801818847656	2	508.28018	1014.54581	0.008559	4.3504E-06	-0.46957	-0.00023867	-0.46101	-0.00023432	508.27990734361447	14.354	0.56228	14.354	14.113	14.676	0					36	19	2	0	0	0	0.1645	1	679	679		40.239	10.399	1	368290			11327	1074	6447	6447	14470	14470					0.03911670812135526
GPEKTRSQL	9	Unmodified	_GPEKTRSQL_					0	0	0		ENST00000594221.5_1_19:7706941-7707474:+|nuORF;nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2	ENST00000594221.5_1_19:7706941-7707474:+|nuORF	ENST00000594221.5_1_19:7706941-7707474:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.280029296875	2	508.28018	1014.54581	-0.014483	-7.3613E-06	0.67277	0.00034196	0.65829	0.00033459	508.27994329140483	14.485	0.75137	14.381	14.131	14.882	-0.10466					70	25	4	0	0	0	0.20381	1	724	724		29.841	3.5724	1	272500			11328	1074	6447	6447	14471	14471					0.03911670812135526
GPEKTRSQL	9	Unmodified	_GPEKTRSQL_					0	0	0		ENST00000594221.5_1_19:7706941-7707474:+|nuORF;nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2	ENST00000594221.5_1_19:7706941-7707474:+|nuORF	ENST00000594221.5_1_19:7706941-7707474:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2800598144531	2	508.28018	1014.54581	-0.047019	-2.3899E-05	-0.47622	-0.00024205	-0.52324	-0.00026595	508.27993373850813	14.477	0.88779	14.411	14.124	15.012	-0.066068					59	31	3	0	0	0	0.11018	1	726	726		53.404	22.136	1	311100			11329	1074	6447	6447	14472	14472					0.03911670812135526
GPEQHGMRC	9	Unmodified	_GPEQHGMRC_					0	0	0			REV__ENST00000500074.2_1_3:129823014-129824450:-|nuORF	REV__ENST00000500074.2_1_3:129823014-129824450:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.27978515625	2	507.715836	1013.41712	0.011329	5.7519E-06	-0.22432	-0.00011389	-0.21299	-0.00010814	507.7156244317736	14.454	0.25594	14.454	14.335	14.591	0					13	8	2	0	0	0	0.25879	1	729	729		4.756	0	1	24080	+		11330	21703	6448	6448	14473	14473					-0.08905330694096847
GPFAFYFKEL	10	Unmodified	_GPFAFYFKEL_					0	0	0			REV__ENSG00000106688|ENST00000262352|SLC1A1	REV__ENSG00000106688|ENST00000262352|SLC1A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.49761962890625	3	406.877975	1217.6121	-0.11198	-4.5562E-05	-2.5409	-0.0010339	-2.6529	-0.0010794	407.21101577463594	57.823	0.13516	57.823	57.768	57.904	0					6	4	2	0	0	0	0.31847	1	13964	13964		3.5871	0.26742	1	164720	+		11331	14531	6449	6449	14474	14474					0.011994866541954252
GPFWVLVPL	9	Unmodified	_GPFWVLVPL_					0	0	0			REV__nc|ENSG00000159398|Q6NT32-2|CES5A	REV__nc|ENSG00000159398|Q6NT32-2|CES5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.9030151367188	2	514.302396	1026.59024	0.36513	0.00018779	3.1578	0.0016241	3.5229	0.0018118	514.3039181232136	20.462	0.38746	20.462	20.263	20.65	0					11	9	2	0	0	0	0.26117	1	2487	2487		2.3027	0.4585	1	59150	+		11332	16850	6450	6450	14475	14475					0.07800726696245874
GPGGAKGG	8	Unmodified	_GPGGAKGG_					0	0	0			REV__ENSG00000185800|ENST00000270223|DMWD	REV__ENSG00000185800|ENST00000270223|DMWD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.7855224609375	1	600.31	599.302724	0.48595	0.00029172	1.0652	0.00063945	1.5511	0.00093116	600.3106721464433	63.04	0.53778	63.04	62.718	63.256	0					26	19	2	0	0	0	0.34437	1	15534	15534		0.69038	0	1	254960	+		11333	18410	6451	6451	14476	14476					-0.01295529122228345
GPGGGGGF	8	Unmodified	_GPGGGGGF_					0	0	0			REV__ENST00000409035.1_1_19:16738827-16739007:-|nuORF	REV__ENST00000409035.1_1_19:16738827-16739007:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.3582153320312	1	605.267801	604.260525	0.8695	0.00052628	-2.474	-0.0014974	-1.6045	-0.00097117	605.2683547175453	77.889	0.21099	77.945	77.816	78.027	0.055412					11	7	2	0	0	0	0.34445	1	20095	20095		0	0	1	65447	+		11334	20751	6452	6452	14477	14477					-0.05743504530619248
GPGLSRTGVEL	11	Unmodified	_GPGLSRTGVEL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8094482421875	2	543.301113	1084.58767	0.69729	0.00037884	-1.2544	-0.00068153	-0.55712	-0.00030269	543.3001226418006	45.134	0.617	45.209	44.988	45.605	0.07505					47	22	3	0	0	0	0.28782	1	10019	10019		19.626	0	1	481780			11335	7913	6453	6453	14478	14478					0.048762265006644157
GPGQVRGLHF	10	Unmodified	_GPGQVRGLHF_					0	0	0			REV__ENST00000319977.8_1_17:42219400-42225280:+|nuORF	REV__ENST00000319977.8_1_17:42219400-42225280:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.3197021484375	2	534.290882	1066.56721	0.38432	0.00020534	-0.56636	-0.0003026	-0.18204	-9.7261E-05	534.2898941001156	26.524	0.56839	26.524	26.161	26.729	0					26	19	2	0	0	0	0.30079	1	4398	4398		20.454	4.6064	1	149340	+		11336	19959	6454	6454	14479	14479					0.03659100631512047
GPGRKRRRKHR	11	Unmodified	_GPGRKRRRKHR_					0	0	0		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.96185302734375	3	468.627493	1402.86065	-0.034237	-1.6044E-05	-0.11272	-5.2826E-05	-0.14696	-6.887E-05	468.6274857773062	96.126	0.71278	96.204	95.886	96.599	0.077408					181	67	3	0	0	0	0.48212	1	25680	25680		0.45452	0.45452	1	532270			11337	6414	6455	6455	14480	14480					0.17533312524915345
GPGRKRRRKHR	11	Unmodified	_GPGRKRRRKHR_					0	0	0		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.62738037109375	3	468.627493	1402.86065	0.25126	0.00011775	-0.41376	-0.0001939	-0.1625	-7.6152E-05	468.62737047076723	96.175	0.77148	96.171	95.933	96.705	-0.0038147					195	75	3	0	0	0	0.48212	1	25761	25761		0.45452	0.45452	1	489130			11338	6414	6455	6455	14481	14481					0.17533312524915345
GPGRKRRRKHR	11	Unmodified	_GPGRKRRRKHR_					0	0	0		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	468.627493	1402.86065	-0.21556	-0.00010102	0.14489	6.79E-05	-0.070667	-3.3116E-05	468.62758902688944	96.271	0.66042	96.271	95.969	96.629	0	0.033687	0.00021159	NaN	0.45452	143	63	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218890			11339	6414	6455	6455							0.17533312524915345
GPGRKRRRKHR	11	Unmodified	_GPGRKRRRKHR_					0	0	0		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	468.627493	1402.86065	-0.034237	-1.6044E-05	-0.11272	-5.2826E-05	-0.14696	-6.887E-05	468.6274857773062	96.126	0.71278	96.204	95.886	96.599	0.077408	-0.033687	-0.00015059	NaN	0.45452	181	67	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	532270			11340	6414	6455	6455							0.17533312524915345
GPGRVQIL	8	Unmodified	_GPGRVQIL_					0	0	0			REV__ENST00000497918.5_1_2:220029863-220033027:-|nuORF	REV__ENST00000497918.5_1_2:220029863-220033027:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.252685546875	2	420.25852	838.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.253	1	58.253	57.753	58.753	0								0	0	0	0.30483	1	14111	14111		28.173	3.4993	1		+		11341	21690	6456	6456	14482	14482					0.0767752582552248
GPGRVQIL	8	Unmodified	_GPGRVQIL_					0	0	0			REV__ENST00000497918.5_1_2:220029863-220033027:-|nuORF	REV__ENST00000497918.5_1_2:220029863-220033027:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.2525634765625	2	420.25852	838.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.108	1	58.194	57.694	58.694	0.085621								0	0	0	0.33625	1	14065	14065		20.871	1.4322	1		+		11342	21690	6456	6456	14483	14483					0.0767752582552248
GPGTPTSIYF	10	Unmodified	_GPGTPTSIYF_					0	0	0			REV__ENSG00000154646|ENST00000284885|TMPRSS15	REV__ENSG00000154646|ENST00000284885|TMPRSS15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7716064453125	2	520.258382	1038.50221	0.26739	0.00013911	-1.0743	-0.00055891	-0.80691	-0.0004198	520.2581705875286	62.193	1.7042	62.185	61.4	63.104	-0.0085564					107	62	2	0	0	0	0.27772	1	15347	15347		26.884	5.137	1	1050200	+		11343	16672	6457	6457	14484	14484					-0.015499386849796792
GPGTVRISL	9	Unmodified	_GPGTVRISL_					0	0	0		ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA;ENST00000532776.5_1_11:65429156-65429483:-|nuORF;ENST00000534305.1_1_11:65429156-65429584:-|nuORF;ENST00000525858.5_1_11:65429156-65430414:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2997741699219	2	450.269084	898.523616	0.37594	0.00016927	-0.27507	-0.00012386	0.10087	4.5418E-05	450.26883327111176	45.376	0.4341	45.376	45.206	45.64	0					27	15	2	0	0	0	0.17696	1	10151	10151		29.841	18.2	1	196200			11344	11626	6458	6458	14485	14485					0.07029491134380805
GPGVAAAALL	10	Unmodified	_GPGVAAAALL_					0	0	0			REV__ENSG00000165661|ENST00000358701|QSOX2	REV__ENSG00000165661|ENST00000358701|QSOX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.2526550292969	2	420.252903	838.491253	0.093112	3.913E-05	-0.27723	-0.00011651	-0.18412	-7.7377E-05	420.25265134020407	57.715	0.94972	57.8	57.518	58.468	0.085617					88	34	4	0	0	0	0.20432	1	14014	14014		32.117	1.8922	1	2251500	+		11345	17251	6459	6459	14486	14486					0.06554703731353584
GPGVAAAALL	10	Unmodified	_GPGVAAAALL_					0	0	0			REV__ENSG00000165661|ENST00000358701|QSOX2	REV__ENSG00000165661|ENST00000358701|QSOX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.2525634765625	2	420.252903	838.491253	0.093112	3.913E-05	-0.27723	-0.00011651	-0.18412	-7.7377E-05	420.25265134020407	57.715	0.94972	57.8	57.518	58.468	0.085617					88	34	4	0	0	0	0.21992	1	14065	14065		32.117	0	1	2251500	+		11346	17251	6459	6459	14487	14487					0.06554703731353584
GPIEMKLTI	9	Unmodified	_GPIEMKLTI_					0	0	0			REV__nc|ENSG00000077092|P10826-3|RARB;REV__nc|ENSG00000131759|P10276-3|RARA;REV__nc|ENSG00000172819|P13631-3|RARG	REV__nc|ENSG00000077092|P10826-3|RARB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.25872802734375	2	501.288628	1000.5627	0.34159	0.00017123	-1.6243	-0.00081426	-1.2827	-0.00064302	501.28808681045064	80.917	0.098412	80.89	80.84	80.938	-0.026817					8	4	2	0	0	0	0.22061	1	21022	21022		24.021	1.2843	1	117080	+		11347	13836;15534;17735	6460	6460	14488	14488					0.06244455373735036
GPIKKPVL	8	Unmodified	_GPIKKPVL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.P1391Qfs*3|1|0.19|ENSG00000117523|chr1:171541644-171541648|CAAGA/-|frameshift_variant;PRRC2C|p.I2096Ffs*11|1|0.06|ENSG00000117523|chr1:171566405-171566406|-/ATTCT|frameshift_variant;nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2203369140625	2	426.289288	850.564024	-0.16866	-7.1899E-05	0.030152	1.2854E-05	-0.13851	-5.9046E-05	426.2892255631037	26.506	0.51725	26.506	26.271	26.789	0					30	17	2	0	0	0	0.30503	1	4360	4360		23.148	9.6405	1	125920			11348	12673;13007	6461	6461	14489	14489					0.13276457524807483
GPIKKPVL	8	Unmodified	_GPIKKPVL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.P1391Qfs*3|1|0.19|ENSG00000117523|chr1:171541644-171541648|CAAGA/-|frameshift_variant;PRRC2C|p.I2096Ffs*11|1|0.06|ENSG00000117523|chr1:171566405-171566406|-/ATTCT|frameshift_variant;nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.22027587890625	2	426.289288	850.564024	-0.17522	-7.4695E-05	0.1044	4.4505E-05	-0.07082	-3.019E-05	426.28927541090144	26.514	0.61619	26.475	26.263	26.879	-0.038671					40	21	3	0	0	0	0.29134	1	4416	4416		26.341	16.994	1	172520			11349	12673;13007	6461	6461	14490	14490					0.13276457524807483
GPIKKPVL	8	Unmodified	_GPIKKPVL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.P1391Qfs*3|1|0.19|ENSG00000117523|chr1:171541644-171541648|CAAGA/-|frameshift_variant;PRRC2C|p.I2096Ffs*11|1|0.06|ENSG00000117523|chr1:171566405-171566406|-/ATTCT|frameshift_variant;nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.22039794921875	2	426.289288	850.564024	0.096861	4.1291E-05	-0.21348	-9.1004E-05	-0.11662	-4.9713E-05	426.28914344137513	26.536	0.4952	26.513	26.266	26.762	-0.022238					28	16	2	0	0	0	0.3366	1	4377	4377		18.135	12.904	1	169590			11350	12673;13007	6461	6461	14491	14491					0.13276457524807483
GPILWKRRSV	10	Unmodified	_GPILWKRRSV_					0	0	0			REV__nc|ENSG00000051825|Q99550-2|MPHOSPH9	REV__nc|ENSG00000051825|Q99550-2|MPHOSPH9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.37109375	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.7	1	111.72	111.22	112.22	0.0131								0	0	0	0.38201	1	29079	29079		0.45834	0.057624	1		+		11351	13569	6462	6462	14492	14492					0.132924840334681
GPILWKRRSV	10	Unmodified	_GPILWKRRSV_					0	0	0			REV__nc|ENSG00000051825|Q99550-2|MPHOSPH9	REV__nc|ENSG00000051825|Q99550-2|MPHOSPH9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3715209960938	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.31	1	113.32	112.82	113.82	0.014824								0	0	0	0.38201	1	29484	29484		0.45834	0.057624	1		+		11352	13569	6462	6462	14493	14493					0.132924840334681
GPIVSVTKL	9	Unmodified	_GPIVSVTKL_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7767639160156	2	457.289485	912.564418	0.26036	0.00011906	-0.017461	-7.9848E-06	0.2429	0.00011108	457.2895933895622	55.163	0.61602	55.163	54.891	55.507	0					37	22	2	0	0	0	0.015674	1	13165	13165		70.716	5.4805	1	889040	+		11353	18372	6463	6463	14494	14494					0.10463832454001931
GPIYDMVFYL	10	Unmodified	_GPIYDMVFYL_					0	0	0			REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF;REV__ENSG00000150457|ENST00000382592|LATS2	REV__ENSG00000150457|ENST00000382592|LATS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.535400390625	3	406.535221	1216.58383	-0.23109	-9.3948E-05	1.5611	0.00063466	1.3301	0.00054071	406.53558582974716	18.757	0.90688	18.639	18.325	19.232	-0.11739					79	31	4	0	0	0	0.31911	1	2045	2045		3.8763	0	1	163760	+		11354	15496;16498	6464	6464	14495	14495					-0.015795793174220307
GPKDRVNPNHL	11	Unmodified	_GPKDRVNPNHL_					0	0	0			REV__ENSG00000105443|ENST00000452733|CYTH2	REV__ENSG00000105443|ENST00000452733|CYTH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9036865234375	3	416.226549	1245.65782	0.23423	9.7491E-05	-0.37359	-0.0001555	-0.13936	-5.8005E-05	416.22623650118385	19.722	0.6115	19.606	19.341	19.952	-0.11592					37	20	2	0	0	0	0.3325	1	2266	2266		4.1166	0	1	192020	+		11355	14458	6465	6465	14496	14496					0.044815248891382
GPKFSIPSF	9	Unmodified	_GPKFSIPSF_					0	0	0			REV__nc|ENSG00000146755|Q86XT4-2|TRIM50	REV__nc|ENSG00000146755|Q86XT4-2|TRIM50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.26507568359375	2	490.26601	978.517468	0.19607	9.6124E-05	-1.3481	-0.00066095	-1.1521	-0.00056483	490.26494326030087	81.871	1.219	81.94	81.6	82.819	0.068993					89	50	3	0	0	0	0.23007	1	21532	21532		19.257	6.7254	1	662560	+		11356	16355	6466	6466	14497	14497					0.027349729028514957
GPKGRRGP	8	Unmodified	_GPKGRRGP_					0	0	0			REV__nc|ENSG00000050767|Q86Y22-2|COL23A1	REV__nc|ENSG00000050767|Q86Y22-2|COL23A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.238037109375	2	412.746111	823.477669	0.21271	8.7797E-05	-0.47181	-0.00019474	-0.2591	-0.00010694	412.7459664610185	80.049	0.92641	80.111	79.516	80.442	0.061417					67	34	3	0	0	0	0.34408	1	20748	20748		2.3027	0	1	371490	+		11357	13566	6467	6467	14498	14498					0.05886890742806372
GPKGRRGP	8	Unmodified	_GPKGRRGP_					0	0	0			REV__nc|ENSG00000050767|Q86Y22-2|COL23A1	REV__nc|ENSG00000050767|Q86Y22-2|COL23A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	412.746111	823.477669	-0.050172	-2.0708E-05	-0.40875	-0.00016871	-0.45893	-0.00018942	412.74602226959246	80.021	1.147	80.021	79.366	80.513	0	-0.029047	3.6016E-05	NaN	4.3292	73	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245740	+		11358	13566	6467	6467							0.05886890742806372
GPKGRRGP	8	Unmodified	_GPKGRRGP_					0	0	0			REV__nc|ENSG00000050767|Q86Y22-2|COL23A1	REV__nc|ENSG00000050767|Q86Y22-2|COL23A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	412.746111	823.477669	0.21328	8.8029E-05	-5.5903	-0.0023074	-5.377	-0.0022193	412.745913703358	80.047	1.1768	80.018	79.348	80.525	-0.028931	-0.031783	-0.0042413	NaN	4.3292	74	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382980	+		11359	13566	6467	6467							0.05886890742806372
GPKKGAARE	9	Unmodified	_GPKKGAARE_					0	0	0			REV__ENST00000491400.5_1_6:35226936-35248953:+|nuORF	REV__ENST00000491400.5_1_6:35226936-35248953:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2643127441406	2	457.264333	912.514114	0.16498	7.5439E-05	0.035946	1.6437E-05	0.20093	9.1876E-05	457.26424841953207	71.499	1.9033	71.499	70.847	72.75	0					207	68	4	0	0	0	0.31763	1	18137	18137		6.2058	0	1	2529800	+		11360	21614	6468	6468	14499	14499					0.054357228488470355
GPKKRSKEHGL	11	Unmodified	_GPKKRSKEHGL_					0	0	0			REV__ENST00000395185.7_1_10:69826963-69832865:-|nuORF	REV__ENST00000395185.7_1_10:69826963-69832865:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.8614501953125	2	618.862203	1235.70985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.878	1	93.877	93.377	94.377	-0.00051117								0	0	0	0.37501	1	25017	25017		2.7352	0.89096	1		+		11361	20628	6469	6469	14500	14500					0.10142688302880742
GPKKYWLK	8	Unmodified	_GPKKYWLK_					0	0	0			REV__ENST00000429674.5_1_7:87471003-87485667:-|nuORF	REV__ENST00000429674.5_1_7:87471003-87485667:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.3056640625	2	510.30547	1018.59639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.27	1	112.25	111.75	112.75	-0.015625								0	0	0	0.38004	1	29204	29204		0.69038	0	1		+		11362	13808	6470	6470	14501	14501					0.08783244927792566
GPKLKLRALED	11	Unmodified	_GPKLKLRALED_					0	0	0		ENSG00000132405|ENST00000409757|TBC1D14	ENSG00000132405|ENST00000409757|TBC1D14	ENSG00000132405|ENST00000409757|TBC1D14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.371826171875	2	620.374612	1238.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.242	1	97.242	96.742	97.742	0								0	0	0	0.37501	1	25999	25999		2.7352	1.0826	1				11363	3630	6471	6471	14502	14502					0.12485323385590164
GPKLKLRALED	11	Unmodified	_GPKLKLRALED_					0	0	0		ENSG00000132405|ENST00000409757|TBC1D14	ENSG00000132405|ENST00000409757|TBC1D14	ENSG00000132405|ENST00000409757|TBC1D14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3728637695312	2	620.374612	1238.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.92	1	96.914	96.414	97.414	-0.0055466								0	0	0	0.37501	1	25931	25931		2.7352	1.2533	1				11364	3630	6471	6471	14503	14503					0.12485323385590164
GPKNTPLL	8	Unmodified	_GPKNTPLL_					0	0	0			REV__ENST00000471981.1_1_1:168195317-168198926:+|nuORF	REV__ENST00000471981.1_1_1:168195317-168198926:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.2527160644531	2	420.252903	838.491253	-0.055935	-2.3507E-05	-0.093874	-3.9451E-05	-0.14981	-6.2958E-05	420.2527334527629	57.876	1.1343	57.876	57.578	58.712	0					86	39	3	0	0	0	0.23581	1	14061	14061		38.151	2.107	1	2382400	+		11365	21361	6472	6472	14504	14504					0.06554703731376321
GPKPGGGPGL	10	Unmodified	_GPKPGGGPGL_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.57861328125	2	418.734877	835.455202	-0.23013	-9.6363E-05	0.56868	0.00023813	0.33856	0.00014177	418.7350131913608	23.379	0.52638	23.379	23.173	23.699	0					29	18	2	0	0	0	0.28434	1	3459	3459		19.257	1.122	1	98017			11366	2731	6473	6473	14505	14505					0.030892465545093728
GPKPGGGPGL	10	Unmodified	_GPKPGGGPGL_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.578369140625	2	418.734877	835.455202	0.14862	6.2233E-05	-0.057591	-2.4116E-05	0.091029	3.8117E-05	418.7347150306766	23.475	0.59087	23.436	23.202	23.793	-0.038927					41	20	3	0	0	0	0.25875	1	3451	3451		32.305	3.8186	1	113030			11367	2731	6473	6473	14506	14506					0.030892465545093728
GPKRKYYNKI	10	Unmodified	_GPKRKYYNKI_					0	0	0			REV__nc|ENSG00000147133|P21675-23|TAF1	REV__nc|ENSG00000147133|P21675-23|TAF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8720703125	2	633.869497	1265.72444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.33	1	118.33	117.83	118.83	0								0	0	0	0.38202	1	30571	30571		0.40072	0.093686	1		+		11368	15166	6474	6474	14507	14507					0.10220760451034039
GPKSRRVCW	9	Unmodified	_GPKSRRVCW_					0	0	0			REV__nc|ENSG00000173852|Q2PZI1|DPY19L1	REV__nc|ENSG00000173852|Q2PZI1|DPY19L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7924194335938	2	544.792735	1087.57092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.25	1	114.23	113.73	114.73	-0.019096								0	0	0	0.2575	1	29674	29674		3.9444	0.94915	1		+		11369	17809	6475	6475	14508	14508					0.030634471337180003
GPKVEVPSL	9	Unmodified	_GPKVEVPSL_					0	0	0			REV__ARHGEF11|p.T962Nfs*7|1|0.37|ENSG00000132694|chr1:156944421-156944422|TA/-|frameshift_variant	REV__ARHGEF11|p.T962Nfs*7|1|0.37|ENSG00000132694|chr1:156944421-156944422|TA/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.2834777832031	2	463.271293	924.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.077	1	89.076	88.576	89.576	-0.00080872								0	0	0	0.24715	1	23545	23545		7.2892	0	1		+		11370	13111	6476	6476	14509	14509					0.06274955557273643
GPLFRNSQL	9	Unmodified	_GPLFRNSQL_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF;nc|ENSG00000104960|Q86YD1-2|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.28564453125	2	516.285266	1030.55598	0.28823	0.00014881	-0.38273	-0.0001976	-0.094498	-4.8788E-05	516.2850766122248	43.881	0.76084	43.881	43.494	44.255	0					70	27	4	0	0	0	0.0046246	1	9652	9652		89.401	28.043	1	1579800			11371	1938	6477	6477	14510	14510					0.04192278537379934
GPLFRNSQL	9	Unmodified	_GPLFRNSQL_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF;nc|ENSG00000104960|Q86YD1-2|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2433471679688	2	516.285266	1030.55598	0.34313	0.00017715	0.078547	4.0553E-05	0.42168	0.00021771	516.2853437168241	43.586	0.60059	43.663	43.347	43.947	0.077518					48	21	3	0	0	0	0.035405	1	9598	9598		70.332	20.399	1	1739900			11372	1938	6477	6477	14511	14511					0.04192278537379934
GPLFRNSQL	9	Unmodified	_GPLFRNSQL_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF;nc|ENSG00000104960|Q86YD1-2|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.243408203125	2	516.285266	1030.55598	0.32146	0.00016596	-0.29418	-0.00015188	0.027275	1.4082E-05	516.2851191717747	43.557	0.63884	43.641	43.41	44.049	0.083996					62	23	4	0	0	0	0.035405	1	9578	9578		61.602	11.669	1	1675600			11373	1938	6477	6477	14512	14512					0.04192278537379934
GPLHHLLFD	9	Unmodified	_GPLHHLLFD_					0	0	0			REV__ENST00000360370.8_1_3:125726003-125734341:-|nuORF	REV__ENST00000360370.8_1_3:125726003-125734341:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7828979492188	2	524.782359	1047.55016	0.59393	0.00031169	-0.49875	-0.00026174	0.095183	4.995E-05	524.7819997177016	20.542	0.6898	20.542	20.31	21	0					57	23	3	0	0	0	0.34536	1	2624	2624		2.0598	0.21551	1	134450	+		11374	20254	6478	6478	14513	14513					0.028291800257193245
GPLKPATGAL	10	Unmodified	_GPLKPATGAL_					0	0	0			REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7976379394531	2	462.779285	923.544017	-1.4258	-0.00065981	0.77752	0.00035982	-0.64824	-0.00029999	462.77915098395925	34.878	0.43841	34.954	34.685	35.123	0.075306					27	15	4	0	0	0	0.33594	1	6931	6931		15.248	1.3424	1	118010	+		11375	13442	6479	6479	14514	14514					0.0791866179419003
GPLKPATGAL	10	Unmodified	_GPLKPATGAL_					0	0	0			REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	462.779285	923.544017	-1.4258	-0.00065981	0.77752	0.00035982	-0.64824	-0.00029999	462.77915098395925	34.878	0.43841	34.954	34.685	35.123	0.075306	0.024761	0.00086454	NaN	15.248	27	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118010	+		11376	13442	6479	6479							0.0791866179419003
GPLKPATGAL	10	Unmodified	_GPLKPATGAL_					0	0	0			REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	462.779285	923.544017	-0.81808	-0.00037859	-0.63554	-0.00029411	-1.4536	-0.00067271	462.77896936825897	34.827	0.30874	34.904	34.807	35.116	0.077377	-0.024761	-0.00044333	NaN	15.248	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104330	+		11377	13442	6479	6479							0.0791866179419003
GPLPPHLAL	9	Unmodified	_GPLPPHLAL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.K592Rfs*19|1|0.3|ENSG00000135829|chr1:182874910-182874910|A/-|frameshift_variant;ENST00000436565.2_1_13:77559322-77559421:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.776611328125	2	457.776545	913.538538	0.16914	7.743E-05	0.32796	0.00015013	0.4971	0.00022756	457.7765839089313	55.243	0.96295	55.243	54.891	55.854	0					75	34	3	0	0	0	0.044139	1	13212	13212		45.75	0	1	1357000			11378	3909	6480	6480	14515	14515					0.07830983002349967
GPLPPHLAL	9	Unmodified	_GPLPPHLAL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.K592Rfs*19|1|0.3|ENSG00000135829|chr1:182874910-182874910|A/-|frameshift_variant;ENST00000436565.2_1_13:77559322-77559421:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7767028808594	2	457.776545	913.538538	0.40212	0.00018408	0.09306	4.2601E-05	0.49518	0.00022668	457.77647479176846	55.163	2.5275	55.234	54.922	57.45	0.070885					146	93	3	0	0	0	0.076445	1	13236	13236		36.466	27.119	1	1630000			11379	3909	6480	6480	14516	14516					0.07830983002349967
GPLPPHLAL	9	Unmodified	_GPLPPHLAL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.K592Rfs*19|1|0.3|ENSG00000135829|chr1:182874910-182874910|A/-|frameshift_variant;ENST00000436565.2_1_13:77559322-77559421:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7765808105469	2	457.776545	913.538538	0.32623	0.00014934	0.096812	4.4318E-05	0.42305	0.00019366	457.7765232256555	55.293	1.2119	55.274	54.947	56.159	-0.019077					93	44	3	0	0	0	0.044139	1	13220	13220		67.413	21.663	1	1386700			11380	3909	6480	6480	14517	14517					0.07830983002349967
GPLRLSPLLPR	11	Unmodified	_GPLRLSPLLPR_					0	0	0		ENSG00000212710|ENST00000391403|CTAGE1	ENSG00000212710|ENST00000391403|CTAGE1	ENSG00000212710|ENST00000391403|CTAGE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.526123046875	3	406.927552	1217.76083	0.15166	6.1714E-05	0.042431	1.7266E-05	0.19409	7.898E-05	406.9274133226473	53.749	0.48174	53.749	53.568	54.05	0					40	17	3	0	0	0	0.33056	1	12690	12690		8.7518	3.2285	1	333590			11381	8330	6481	6481	14518	14518					0.16065637347742268
GPLRWARWAP	10	Unmodified	_GPLRWARWAP_					0	0	0			REV__ENST00000312637.4_1_5:99871175-99871238:+|nuORF	REV__ENST00000312637.4_1_5:99871175-99871238:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.52679443359375	3	403.892842	1208.6567	-0.41207	-0.00016643	3.4517	0.0013941	3.0396	0.0012277	404.2283762233686	15.225	0.38312	15.161	15.041	15.424	-0.064413					16	12	2	0	0	0	0.32033	1	992	992		1.7423	0.7287	1	19690	+		11382	19912	6482	6482	14519	14519					0.06071355310882609
GPLTPLYI	8	Unmodified	_GPLTPLYI_					0	0	0			REV__ENST00000346178.8_1_11:62398636-62400083:-|nuORF	REV__ENST00000346178.8_1_11:62398636-62400083:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.247314453125	2	437.257654	872.500755	0.41937	0.00018337	0.0039908	1.745E-06	0.42336	0.00018512	437.2576857363816	77.872	0.56378	77.872	77.58	78.144	0					38	20	3	0	0	0	0.43727	1	20108	20108		10.183	0	1	217580	+		11383	20151	6483	6483	14520	14520					0.05940472016891363
GPLYKNGSL	9	Unmodified	_GPLYKNGSL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000153165|ENST00000409886|RGPD3	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7613525390625	2	474.761092	947.507631	0.47225	0.00022421	0.43313	0.00020564	0.90538	0.00042984	474.76121552433733	34.044	0.4677	34.044	33.839	34.306	0					30	16	2	0	0	0	0.088443	1	6681	6681		39.95	18.203	1	189720			11384	5064;484;7523	6484	6484	14521	14521					0.031777848974684275
GPLYKNGSL	9	Unmodified	_GPLYKNGSL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000153165|ENST00000409886|RGPD3	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7611999511719	2	474.761092	947.507631	0.80871	0.00038394	-0.05967	-2.8329E-05	0.74904	0.00035561	474.7609801932174	33.893	0.53081	33.959	33.733	34.264	0.06636					32	18	2	0	0	0	0.047483	1	6627	6627		53.833	17.789	1	199590			11385	5064;484;7523	6484	6484	14522	14522					0.031777848974684275
GPLYKNGSL	9	Unmodified	_GPLYKNGSL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000153165|ENST00000409886|RGPD3	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	474.761092	947.507631	0.1058	5.023E-05	0.82091	0.00038974	0.92671	0.00043997	474.76134060181164	33.845	0.44225	33.912	33.711	34.153	0.0667	-0.059945	0.00036006	NaN	53.833	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190160			11386	5064;484;7523	6484	6484							0.031777848974684275
GPNPKSSRTTL	11	Unmodified	_GPNPKSSRTTL_					0	0	0		ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF	ENSG00000108312|ENST00000436088|UBTF	ENSG00000108312|ENST00000436088|UBTF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3173828125	2	579.317294	1156.62004	0.21791	0.00012624	-0.061276	-3.5498E-05	0.15663	9.0738E-05	579.3172710209335	16.967	0.79673	16.967	16.521	17.318	0					54	27	3	0	0	0	0.25774	2	1500	1451;1500		26.021	14.526	1	311090			11387	2174	6485	6485	14523;14524	14524					0.04799013903675586
GPNPKSSRTTL	11	Unmodified	_GPNPKSSRTTL_					0	0	0		ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF	ENSG00000108312|ENST00000436088|UBTF	ENSG00000108312|ENST00000436088|UBTF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.3173217773438	2	579.317294	1156.62004	0.11276	6.5324E-05	0.073125	4.2362E-05	0.18589	0.00010769	579.3173099111774	17.09	0.77658	16.973	16.664	17.441	-0.11739					61	27	3	0	0	0	0.31831	2	1544	1495;1544		20.581	12.425	1	264200			11388	2174	6485	6485	14525;14526	14526					0.04799013903675586
GPNPKSSRTTL	11	Unmodified	_GPNPKSSRTTL_					0	0	0		ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF	ENSG00000108312|ENST00000436088|UBTF	ENSG00000108312|ENST00000436088|UBTF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.3177490234375	2	579.317294	1156.62004	0.34224	0.00019827	0.072326	4.19E-05	0.41457	0.00024017	579.3172598197636	16.998	0.68076	16.937	16.56	17.241	-0.060429					55	24	3	0	0	0	0.36569	2	1469	1469;1514		15.739	7.5831	1	324210			11389	2174	6485	6485	14527;14528	14527					0.04799013903675586
GPNPKSSRTTL	11	Unmodified	_GPNPKSSRTTL_					0	0	0		ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF	ENSG00000108312|ENST00000436088|UBTF	ENSG00000108312|ENST00000436088|UBTF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	579.317294	1156.62004	0.29979	0.00017368	-1.0158	-0.00058845	-0.71597	-0.00041477	579.3171995619086	17.359	0.088894	17.298	17.241	17.33	-0.060429	0.21892	-0.0011889	NaN	26.021	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10250			11390	2174	6485	6485							0.04799013903675586
GPNRNRLLL	9	Unmodified	_GPNRNRLLL_					0	0	0		nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.820068359375	2	526.819807	1051.62506	0.46809	0.0002466	0.10429	5.4944E-05	0.57238	0.00030154	526.8198184551045	30.802	1.0539	30.802	30.473	31.526	0					101	37	4	0	0	0	0.019896	3	5689	5643;5689;5732		64.236	31.931	1	2997700			11391	6293	6486	6486	14529;14530;14531	14530					0.1013136255696736
GPNRNRLLL	9	Unmodified	_GPNRNRLLL_					0	0	0		nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8201293945312	2	526.819807	1051.62506	0.34453	0.00018151	0.26994	0.00014221	0.61448	0.00032372	526.8199107776338	30.816	1.032	30.843	30.496	31.528	0.027948					95	36	4	0	0	0	0.037693	3	5698	5648;5698;5743		57.471	32.305	1	3233500			11392	6293	6486	6486	14532;14533;14534	14533					0.1013136255696736
GPNRNRLLL	9	Unmodified	_GPNRNRLLL_					0	0	0		nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8201293945312	2	526.819807	1051.62506	0.34041	0.00017934	0.2761	0.00014546	0.61651	0.00032479	526.8198983564612	30.778	1.0174	30.805	30.476	31.493	0.027159					88	36	4	0	0	0	0.0032391	2	5684	5637;5684		100.37	64.244	1	3286800			11393	6293	6486	6486	14535;14536	14536					0.1013136255696736
GPNSNRSQF	9	Unmodified	_GPNSNRSQF_					0	0	0		ENSG00000100023|ENST00000398831|PPIL2;nc|ENSG00000100023|Q13356-2|PPIL2	ENSG00000100023|ENST00000398831|PPIL2	ENSG00000100023|ENST00000398831|PPIL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.7388916015625	2	503.73868	1005.46281	0.29405	0.00014812	1.2298	0.00061951	1.5239	0.00076764	503.73923723256036	16.988	0.7573	16.988	16.72	17.477	0					65	26	4	0	0	0	0.17555	1	1518	1518		27.223	7.7842	1	370300			11394	1516	6487	6487	14537	14537					-0.039706459158537655
GPPARLLL	8	Unmodified	_GPPARLLL_					0	0	0			REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.7705993652344	2	418.771263	835.527973	-1.3522	-0.00056625	0.30529	0.00012785	-1.0469	-0.00043841	418.77126999648453	34.807	0.99198	34.807	34.5	35.492	0					78	35	3	0	0	0	0.23581	1	6892	6892		38.151	6.0342	1	511790	+		11395	18296	6488	6488	14538	14538					0.10363000347956586
GPPARLLL	8	Unmodified	_GPPARLLL_					0	0	0			REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.580322265625	2	418.771263	835.527973	-0.28202	-0.0001181	-0.56834	-0.000238	-0.85036	-0.00035611	418.77098600457595	46.319	0.73098	46.319	46.029	46.76	0					47	26	2	0	0	0	0.25627	1	10406	10406		46.921	12.734	1	585770	+		11396	18296	6488	6488	14539	14539					0.10363000347956586
GPPARLLL	8	Unmodified	_GPPARLLL_					0	0	0			REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.77081298828125	2	418.771263	835.527973	0.029588	1.239E-05	-0.90272	-0.00037803	-0.87313	-0.00036564	418.7707697004809	46.219	0.78791	46.279	45.984	46.772	0.059837					45	28	2	0	0	0	0.12267	1	10414	10414		56.541	6.8724	1	609780	+		11397	18296	6488	6488	14540	14540					0.10363000347956586
GPPARLLL	8	Unmodified	_GPPARLLL_					0	0	0			REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.5802307128906	2	418.771263	835.527973	0.029588	1.239E-05	-0.90272	-0.00037803	-0.87313	-0.00036564	418.7707697004809	46.219	0.78791	46.279	45.984	46.772	0.059837					45	28	2	0	0	0	0.21281	1	10366	10366		56.541	6.8724	1	609780	+		11398	18296	6488	6488	14541	14541					0.10363000347956586
GPPARLLL	8	Unmodified	_GPPARLLL_					0	0	0			REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.77044677734375	2	418.771263	835.527973	-0.73354	-0.00030719	-0.37399	-0.00015662	-1.1075	-0.0004638	418.771017035085	34.67	0.99679	34.747	34.444	35.441	0.077377					85	35	3	0	0	0	0.23581	1	6848	6848		38.151	3.9638	1	636900	+		11399	18296	6488	6488	14542	14542					0.10363000347956586
GPPARLLL	8	Unmodified	_GPPARLLL_					0	0	0			REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5802917480469	2	418.771263	835.527973	0.034055	1.4261E-05	-0.7728	-0.00032363	-0.73875	-0.00030937	418.77089743403377	46.205	0.88687	46.27	45.951	46.838	0.065052					59	31	3	0	0	0	0.27422	1	10345	10345		32.117	0	1	454190	+		11400	18296	6488	6488	14543	14543					0.10363000347956586
GPQKELVIPGI	11	Unmodified	_GPQKELVIPGI_					0	0	0		nc|ENSG00000166220|Q96M53-2|TBATA;nc|ENSG00000166220|Q96M53|TBATA;ENSG00000166220|ENST00000456372|TBATA	nc|ENSG00000166220|Q96M53-2|TBATA	nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7927856445312	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.874	1	90.965	90.465	91.465	0.090668								0	0	0	0.36137	1	24096	24096		5.7319	0	1				11401	6045	6489	6489	14544	14544					0.10690847091268552
GPQPRRPLKQ	10	Unmodified	_GPQPRRPLKQ_					0	0	0			REV__ENSG00000039523|ENST00000042381|RIPOR1	REV__ENSG00000039523|ENST00000042381|RIPOR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.8515014648438	2	588.851638	1175.68872	0.53552	0.00031534	0.2313	0.0001362	0.76682	0.00045154	588.8508385018337	91.742	0.63477	91.743	91.437	92.072	0.00046539					70	40	3	0	0	0	0.38233	1	24389	24389		6.7232	0.99131	1	289270	+		11402	13522	6490	6490	14545	14545					0.10790722994011048
GPRAKVFAVL	10	Unmodified	_GPRAKVFAVL_					0	0	0		ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.8087768554688	2	529.329476	1056.6444	0.48453	0.00025647	-0.20603	-0.00010906	0.27849	0.00014741	529.3294734770966	43.328	0.59429	43.328	43.062	43.656	0					51	21	3	0	0	0	0.30093	1	9519	9519		21.537	7.6309	1	836700			11403	5821	6491	6491	14546	14546					0.11834318847832037
GPRALTEEL	9	Unmodified	_GPRALTEEL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.26934814453125	2	493.269281	984.52401	0.34526	0.00017031	-0.20526	-0.00010125	0.14	6.9059E-05	493.2690794502461	40.096	1.1006	40.096	39.695	40.796	0					90	39	4	0	0	0	0.05341	1	8573	8573		51.63	13.656	1	1570300			11404	6752	6492	6492	14547	14547					0.031128660635772576
GPRALTEEL	9	Unmodified	_GPRALTEEL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.269287109375	2	493.269281	984.52401	0.53656	0.00026467	-0.27917	-0.0001377	0.25739	0.00012696	493.2690457868575	39.871	0.78503	39.964	39.662	40.448	0.09267					64	27	3	0	0	0	0.05341	1	8488	8488		51.63	15.503	1	1932000			11405	6752	6492	6492	14548	14548					0.031128660635772576
GPRALTEEL	9	Unmodified	_GPRALTEEL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.26934814453125	2	493.269281	984.52401	0.38918	0.00019197	-0.21591	-0.0001065	0.17326	8.5465E-05	493.2690812830675	39.86	1.019	39.959	39.622	40.641	0.099403					76	36	3	0	0	0	0.03069	2	8452	8452;8508		60.074	14.053	1	1795800			11406	6752	6492	6492	14549;14550	14549					0.031128660635772576
GPRAPVGSI	9	Unmodified	_GPRAPVGSI_					0	0	0		ENSG00000144218|ENST00000672756|AFF3;nc|ENSG00000144218|P51826-2|AFF3	ENSG00000144218|ENST00000672756|AFF3	ENSG00000144218|ENST00000672756|AFF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.2481689453125	2	427.248152	852.481751	0.070024	2.9918E-05	-0.076268	-3.2585E-05	-0.0062441	-2.6678E-06	427.2479992176986	26.874	0.59331	26.863	26.567	27.16	-0.01156					39	20	3	0	0	0	0.041175	1	4490	4490		56.177	3.9087	1	524290			11407	4570	6493	6493	14551	14551					0.04960935445865289
GPRARSLGF	9	Unmodified	_GPRARSLGF_					0	0	0			REV__ENST00000459777.5_1_10:99205967-99212662:+|nuORF	REV__ENST00000459777.5_1_10:99205967-99212662:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7643737792969	2	480.772326	959.530098	-0.12427	-5.9747E-05	-0.97819	-0.00047029	-1.1025	-0.00053003	480.7718095370194	13.613	0.43258	13.513	13.362	13.795	-0.099291					34	15	4	0	0	0	0.32733	1	559	559		4.756	0	1	278780	+		11408	21193	6494	6494	14552	14552					0.04871429085756063
GPRAVFVLL	9	Unmodified	_GPRAVFVLL_					0	0	0		ENSG00000068323|ENST00000315869|TFE3;nc|ENSG00000068323|P19532-2|TFE3	ENSG00000068323|ENST00000315869|TFE3	ENSG00000068323|ENST00000315869|TFE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.3049621582031	2	486.30547	970.596387	0.45265	0.00022013	-1.4845	-0.00072194	-1.0319	-0.00050182	486.30449948123504	66.146	1.6455	66.146	65.577	67.222	0					134	58	4	0	0	0	0.14076	3	16538	16493;16538;16584		32.305	7.2643	1	4488400			11409	880	6495	6495	14553;14554;14555	14554					0.10991244927799926
GPRAVFVLL	9	Unmodified	_GPRAVFVLL_					0	0	0		ENSG00000068323|ENST00000315869|TFE3;nc|ENSG00000068323|P19532-2|TFE3	ENSG00000068323|ENST00000315869|TFE3	ENSG00000068323|ENST00000315869|TFE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.3050231933594	2	486.30547	970.596387	0.46971	0.00022842	-1.287	-0.00062587	-0.81727	-0.00039744	486.3046182444795	66.006	1.4228	66.09	65.623	67.046	0.083832					117	51	4	0	0	0	0.088391	2	16493	16443;16493		39.957	11.47	1	4369300			11410	880	6495	6495	14556;14557	14557					0.10991244927799926
GPRAVFVLL	9	Unmodified	_GPRAVFVLL_					0	0	0		ENSG00000068323|ENST00000315869|TFE3;nc|ENSG00000068323|P19532-2|TFE3	ENSG00000068323|ENST00000315869|TFE3	ENSG00000068323|ENST00000315869|TFE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.3049011230469	2	486.30547	970.596387	0.32604	0.00015855	-2.1874	-0.0010638	-1.8614	-0.00090521	486.3039081804789	66.138	3.5412	66.124	64.687	68.228	-0.013588					203	127	4	0	0	0	0.088391	2	16521	16521;16571		39.957	7.6518	1	4908000			11411	880	6495	6495	14558;14559	14558					0.10991244927799926
GPRDHSVQL	9	Unmodified	_GPRDHSVQL_					0	0	0		nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7652282714844	2	504.764697	1007.51484	0.22962	0.0001159	0.24236	0.00012233	0.47198	0.00023824	504.76474032315997	22.282	0.42251	22.182	21.968	22.39	-0.10034					39	15	3	0	0	0	0.19083	1	3109	3109		24.991	4.5373	1	136380			11412	8094	6496	6496	14560	14560					0.011385174979068324
GPREAFRQL	9	Unmodified	_GPREAFRQL_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2964477539062	2	537.296165	1072.57778	0.42252	0.00022702	-0.063079	-3.3892E-05	0.35944	0.00019313	537.2961243808786	30.917	1.6377	30.917	29.945	31.583	0					147	58	4	0	0	0	0.0013683	5	5741	5590;5641;5690;5741;5783		118.07	72.499	1	5249100			11413	6526	6497	6497	14561;14562;14563;14564;14565	14564					0.044390832859335205
GPREAFRQL	9	Unmodified	_GPREAFRQL_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2965087890625	2	537.296165	1072.57778	0.23858	0.00012819	0.19833	0.00010656	0.43691	0.00023475	537.2962591841042	30.955	1.5119	30.983	30.048	31.559	0.027946					142	53	4	0	0	0	0.00078391	5	5733	5580;5630;5683;5733;5783		125.53	93.166	1	5095800			11414	6526	6497	6497	14566;14567;14568;14569;14570	14569					0.044390832859335205
GPREAFRQL	9	Unmodified	_GPREAFRQL_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2964477539062	2	537.296165	1072.57778	0.3446	0.00018515	0.0037992	2.0413E-06	0.3484	0.00018719	537.2961757618339	30.876	1.4746	30.903	30.019	31.493	0.027157					134	52	4	0	0	0	0.00078391	5	5695	5594;5646;5695;5745;5785		125.53	99.755	1	6084500			11415	6526	6497	6497	14571;14572;14573;14574;14575	14573					0.044390832859335205
GPRFTLKLRSL	11	Unmodified	_GPRFTLKLRSL_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.26885986328125	3	429.934706	1286.78229	0.037937	1.631E-05	-0.23486	-0.00010098	-0.19693	-8.4666E-05	429.934485470103	46.016	0.60378	46.016	45.746	46.35	0					47	21	3	0	0	0	0.19732	1	10313	10313		48.468	19.177	1	1493900			11416	2776	6498	6498	14576	14576					0.15037022376463938
GPRFTLKLRSL	11	Unmodified	_GPRFTLKLRSL_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.9344177246094	3	429.934706	1286.78229	-0.090643	-3.897E-05	-0.07901	-3.3969E-05	-0.16965	-7.2939E-05	429.9346376008123	45.7	0.58669	45.76	45.536	46.123	0.059834					52	20	4	0	0	0	0.0079184	2	10225	10225;10279		74.077	16.6	1	1625600			11417	2776	6498	6498	14577;14578	14577					0.15037022376463938
GPRFTLKLRSL	11	Unmodified	_GPRFTLKLRSL_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.9344482421875	3	429.934706	1286.78229	0.14684	6.313E-05	-0.2927	-0.00012584	-0.14586	-6.2712E-05	429.9345113318715	45.744	0.60214	45.809	45.544	46.146	0.065048					52	21	3	0	0	0	0.056842	2	10223	10223;10276		51.264	17.002	1	1435300			11418	2776	6498	6498	14579;14580	14579					0.15037022376463938
GPRGRVSEL	9	Unmodified	_GPRGRVSEL_					0	0	0		ENST00000557787.1_1_15:89164581-89170043:+|nuORF;ENSG00000181026|ENST00000332810|AEN;nc|ENSG00000181026|Q8WTP8-2|AEN	ENST00000557787.1_1_15:89164581-89170043:+|nuORF	ENST00000557787.1_1_15:89164581-89170043:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7750244140625	2	485.775065	969.535577	0.052075	2.5297E-05	-0.46752	-0.00022711	-0.41544	-0.00020181	485.7749195960147	18.818	1.2329	18.818	18.535	19.768	0					117	43	5	0	0	0	0.037019	2	2026	2026;2076		57.722	27.881	1	2132500			11419	7216	6499	6499	14581;14582	14581					0.04959107877573388
GPRGRVSEL	9	Unmodified	_GPRGRVSEL_					0	0	0		ENST00000557787.1_1_15:89164581-89170043:+|nuORF;ENSG00000181026|ENST00000332810|AEN;nc|ENSG00000181026|Q8WTP8-2|AEN	ENST00000557787.1_1_15:89164581-89170043:+|nuORF	ENST00000557787.1_1_15:89164581-89170043:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.77496337890625	2	485.775065	969.535577	0.038742	1.882E-05	-0.44352	-0.00021545	-0.40477	-0.00019663	485.7748965088685	18.944	1.2153	18.886	18.57	19.786	-0.058174					103	42	4	0	0	0	0.023967	2	2101	2059;2101		62.573	20.733	1	2446800			11420	7216	6499	6499	14583;14584	14584					0.04959107877573388
GPRGRVSEL	9	Unmodified	_GPRGRVSEL_					0	0	0		ENST00000557787.1_1_15:89164581-89170043:+|nuORF;ENSG00000181026|ENST00000332810|AEN;nc|ENSG00000181026|Q8WTP8-2|AEN	ENST00000557787.1_1_15:89164581-89170043:+|nuORF	ENST00000557787.1_1_15:89164581-89170043:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	485.775065	969.535577	0.071696	3.4828E-05	-0.42296	-0.00020547	-0.35127	-0.00017064	485.7749165705046	18.993	1.2004	18.875	18.556	19.756	-0.11739	0.015777	1.3083E-05	NaN	62.573	113	41	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2282700			11421	7216	6499	6499							0.04959107877573388
GPRKGGRVI	9	Unmodified	_GPRKGGRVI_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2957763671875	2	470.295968	938.577383	-0.26649	-0.00012533	-0.30418	-0.00014306	-0.57067	-0.00026838	470.2963764977237	13.47	0.77275	13.47	13.282	14.055	0					80	26	5	0	0	0	0.0085732	2	417	417;460		81.613	29.345	1	6354600			11422	1943	6500	6500	14585;14586	14585					0.10563708356744428
GPRKGGRVI	9	Unmodified	_GPRKGGRVI_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.29583740234375	2	470.295968	938.577383	-0.22539	-0.000106	-0.30294	-0.00014247	-0.52833	-0.00024847	470.29632894622233	13.527	0.80561	13.427	13.249	14.054	-0.099291					84	28	5	0	0	0	0.0041925	2	438	438;486		92.822	38.049	1	6426100			11423	1943	6500	6500	14587;14588	14587					0.10563708356744428
GPRKGGRVI	9	Unmodified	_GPRKGGRVI_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2961120605469	2	470.295968	938.577383	-0.16107	-7.5753E-05	-0.35418	-0.00016657	-0.51526	-0.00024232	470.2963116647136	13.521	0.75978	13.454	13.275	14.035	-0.067495					80	26	5	0	0	0	0.013258	2	482	435;482		74.423	28.402	1	5545400			11424	1943	6500	6500	14589;14590	14590					0.10563708356744428
GPRKGTHLL	9	Unmodified	_GPRKGTHLL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;ENST00000585230.1_1_17:27014435-27015237:+|nuORF	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.79559326171875	2	489.795801	977.577048	0.11164	5.4682E-05	-0.1048	-5.1328E-05	0.0068469	3.3536E-06	489.7956436032993	15.808	0.59499	15.808	15.557	16.152	0					49	20	4	0	0	0	0.088443	1	1131	1131		39.95	11.463	1	303810			11425	2237	6501	6501	14591	14591					0.08736288636896461
GPRKGTHLL	9	Unmodified	_GPRKGTHLL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;ENST00000585230.1_1_17:27014435-27015237:+|nuORF	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.79571533203125	2	489.795801	977.577048	0.11257	5.5138E-05	0.19059	9.335E-05	0.30316	0.00014849	489.7957014672387	15.932	0.81591	15.817	15.46	16.275	-0.11434					52	27	3	0	0	0	0.13748	1	1168	1168		32.786	11.039	1	281520			11426	2237	6501	6501	14592	14592					0.08736288636896461
GPRKGTHLL	9	Unmodified	_GPRKGTHLL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;ENST00000585230.1_1_17:27014435-27015237:+|nuORF	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.79559326171875	2	489.795801	977.577048	0.13986	6.8502E-05	-0.050257	-2.4616E-05	0.089601	4.3886E-05	489.795678871287	15.851	0.57221	15.788	15.575	16.147	-0.062904					42	19	3	0	0	0	0.13748	2	1140	1140;1188		32.786	11.039	1	276410			11427	2237	6501	6501	14593;14594	14593					0.08736288636896461
GPRLLLTAL	9	Unmodified	_GPRLLLTAL_					0	0	0		ENSG00000119227|ENST00000412723|PIGZ	ENSG00000119227|ENST00000412723|PIGZ	ENSG00000119227|ENST00000412723|PIGZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.3105773925781	2	477.310752	952.606951	0.318	0.00015179	-0.3387	-0.00016166	-0.020697	-9.8791E-06	477.31045447905404	62.548	1.4168	62.645	61.924	63.341	0.096989					94	51	3	0	0	0	0.12642	1	15457	15457		34.402	5.3201	1	799070			11428	2863	6502	6502	14595	14595					0.12875227582219395
GPRLPWTRL	9	Unmodified	_GPRLPWTRL_					0	0	0		nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.269775390625	2	548.324725	1094.6349	0.47815	0.00026218	-0.78141	-0.00042846	-0.30325	-0.00016628	548.3245263598463	49.402	0.62376	49.447	49.045	49.669	0.044891					48	22	3	0	0	0	0.24471	1	11394	11394		17.113	6.289	1	370690			11429	2906	6503	6503	14596	14596					0.0913655056231164
GPRLTVKAL	9	Unmodified	_GPRLTVKAL_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-3|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.8082275390625	2	477.808377	953.6022	0.39888	0.00019059	-3.4459	-0.0016465	-3.047	-0.0014559	477.8083295107047	33.716	1.2449	33.716	33.091	34.336	0					132	44	5	0	0	0	0.19083	1	6552	6552		24.991	2.2547	1	588200			11430	1387	6504	6504	14597	14597					0.12354343439449167
GPRLTVKAL	9	Unmodified	_GPRLTVKAL_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-3|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.8084411621094	2	477.808377	953.6022	0.66882	0.00031957	-3.8505	-0.0018398	-3.1816	-0.0015202	477.80828191314623	33.593	1.0214	33.659	33.182	34.203	0.06636					104	36	6	0	0	0	0.12279	1	6525	6525		34.932	12.196	1	752520			11431	1387	6504	6504	14598	14598					0.12354343439449167
GPRLTVKAL	9	Unmodified	_GPRLTVKAL_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-3|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.8083190917969	2	477.808377	953.6022	0.092672	4.4279E-05	-2.8096	-0.0013424	-2.7169	-0.0012982	477.8085838102265	33.592	0.9939	33.658	33.187	34.181	0.066704					109	35	5	0	0	0	0.10059	1	6503	6503		38.176	14.155	1	766150			11432	1387	6504	6504	14599	14599					0.12354343439449167
GPRNAQIQAL	10	Unmodified	_GPRNAQIQAL_					0	0	0		nc|ENSG00000171606|Q96GC6-2|ZNF274;ENSG00000171606|ENST00000617501|ZNF274;nc|ENSG00000171606|Q96GC6-3|ZNF274	nc|ENSG00000171606|Q96GC6-2|ZNF274	nc|ENSG00000171606|Q96GC6-2|ZNF274	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.3118286132812	2	534.301447	1066.58834	0.73207	0.00039115	-0.25477	-0.00013612	0.4773	0.00025502	534.3012436548605	32.554	0.38148	32.554	32.338	32.72	0					26	13	3	0	0	0	0.12843	1	6201	6201		41.84	3.8656	1	228680			11433	6562	6505	6505	14600	14600					0.05771065940348308
GPRNAQIQAL	10	Unmodified	_GPRNAQIQAL_					0	0	0		nc|ENSG00000171606|Q96GC6-2|ZNF274;ENSG00000171606|ENST00000617501|ZNF274;nc|ENSG00000171606|Q96GC6-3|ZNF274	nc|ENSG00000171606|Q96GC6-2|ZNF274	nc|ENSG00000171606|Q96GC6-2|ZNF274	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.3118896484375	2	534.301447	1066.58834	0.58852	0.00031445	-0.44904	-0.00023992	0.13948	7.4524E-05	534.301273256365	32.448	0.47011	32.503	32.26	32.73	0.055309					25	16	2	0	0	0	0.23542	1	6186	6186		39.95	15.929	1	249060			11434	6562	6505	6505	14601	14601					0.05771065940348308
GPRNAQIQAL	10	Unmodified	_GPRNAQIQAL_					0	0	0		nc|ENSG00000171606|Q96GC6-2|ZNF274;ENSG00000171606|ENST00000617501|ZNF274;nc|ENSG00000171606|Q96GC6-3|ZNF274	nc|ENSG00000171606|Q96GC6-2|ZNF274	nc|ENSG00000171606|Q96GC6-2|ZNF274	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.64599609375	2	534.301447	1066.58834	0.49228	0.00026303	-0.42791	-0.00022863	0.064375	3.4396E-05	534.3012985277969	32.455	0.46234	32.509	32.277	32.739	0.054371					34	16	3	0	0	0	0.24708	1	6168	6168		36.127	10.728	1	177400			11435	6562	6505	6505	14602	14602					0.05771065940348308
GPRPGVDAAK	10	Unmodified	_GPRPGVDAAK_					0	0	0			REV__ENST00000507035.2_1_5:134374548-134375597:-|nuORF	REV__ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.2547302246094	2	484.269616	966.524678	0.10765	5.213E-05	0.78019	0.00037782	0.88783	0.00042995	484.2697681275908	22.658	1.0111	22.614	22.156	23.167	-0.044867					71	35	3	0	0	0	0.38515	1	3358	3358		6.2058	0.97511	1	252330	+		11436	21756	6506	6506	14603	14603					0.040077055032725184
GPRPGVDAAK	10	Unmodified	_GPRPGVDAAK_					0	0	0			REV__ENST00000507035.2_1_5:134374548-134375597:-|nuORF	REV__ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	484.269616	966.524678	0.056591	2.7405E-05	1.02	0.00049395	1.0766	0.00052135	484.2700361323567	22.491	1.1367	22.491	21.94	23.077	0	-0.042523	0.00014398	NaN	6.2058	81	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270760	+		11437	21756	6506	6506							0.040077055032725184
GPRPGVDAAK	10	Unmodified	_GPRPGVDAAK_					0	0	0			REV__ENST00000507035.2_1_5:134374548-134375597:-|nuORF	REV__ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	484.269616	966.524678	0.071231	3.4495E-05	0.8862	0.00042916	0.95743	0.00046366	484.269885054143	22.583	0.87946	22.495	22.138	23.018	-0.087608	-0.037898	1.4407E-05	NaN	6.2058	74	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323130	+		11438	21756	6506	6506							0.040077055032725184
GPRPGVDAAK	10	Unmodified	_GPRPGVDAAK_					0	0	0			REV__ENST00000507035.2_1_5:134374548-134375597:-|nuORF	REV__ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	484.269616	966.524678	0.10765	5.213E-05	0.78019	0.00037782	0.88783	0.00042995	484.2697681275908	22.658	1.0111	22.614	22.156	23.167	-0.044867	0.080422	-8.8275E-05	NaN	6.2058	71	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252330	+		11439	21756	6506	6506							0.040077055032725184
GPRPITQSEL	10	Unmodified	_GPRPITQSEL_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3009643554688	2	549.301113	1096.58767	-0.42613	-0.00023407	0.98851	0.00054299	0.56238	0.00030892	549.3014739447898	34.443	0.74553	34.518	34.129	34.874	0.075306					64	26	3	0	0	0	0.049822	1	6752	6752		59.052	5.6485	1	883920			11440	4168	6507	6507	14604	14604					0.04324226500648365
GPRPITQSEL	10	Unmodified	_GPRPITQSEL_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3013305664062	2	549.301113	1096.58767	0.052973	2.9098E-05	0.51174	0.0002811	0.56471	0.00031019	549.3012204123329	34.372	0.69905	34.445	34.134	34.833	0.073601					60	24	3	0	0	0	0.049822	1	6740	6740		59.052	13.313	1	809930			11441	4168	6507	6507	14605	14605					0.04324226500648365
GPRRGRDSL	9	Unmodified	_GPRRGRDSL_					0	0	0		ENST00000300181.6_2_7:100076533-100076662:-|nuORF	ENST00000300181.6_2_7:100076533-100076662:-|nuORF	ENST00000300181.6_2_7:100076533-100076662:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2835998535156	2	507.283589	1012.55262	-0.017578	-8.9168E-06	-0.0060653	-3.0768E-06	-0.023643	-1.1994E-05	507.28362337257386	13.27	0.60224	13.27	13.058	13.66	0					57	20	4	0	0	0	0.020233	2	359	359;410		63.961	25.785	1	1161700			11442	9219	6508	6508	14606;14607	14606					0.046850284833681144
GPRRGRDSL	9	Unmodified	_GPRRGRDSL_					0	0	0		ENST00000300181.6_2_7:100076533-100076662:-|nuORF	ENST00000300181.6_2_7:100076533-100076662:-|nuORF	ENST00000300181.6_2_7:100076533-100076662:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2835998535156	2	507.283589	1012.55262	-0.061199	-3.1045E-05	0.15186	7.7035E-05	0.09066	4.599E-05	507.2836677542496	13.364	0.81144	13.265	13.097	13.908	-0.099291					64	28	4	0	0	0	0.032589	1	396	396		59.368	17.413	1	1171300			11443	9219	6508	6508	14608	14608					0.046850284833681144
GPRRGRDSL	9	Unmodified	_GPRRGRDSL_					0	0	0		ENST00000300181.6_2_7:100076533-100076662:-|nuORF	ENST00000300181.6_2_7:100076533-100076662:-|nuORF	ENST00000300181.6_2_7:100076533-100076662:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2835388183594	2	507.283589	1012.55262	-0.10062	-5.104E-05	0.135	6.8483E-05	0.034385	1.7443E-05	507.28368040501306	13.334	0.64409	13.266	13.102	13.746	-0.067496					60	22	4	0	0	0	0.11201	2	382	382;428		36.506	14.969	1	1001900			11444	9219	6508	6508	14609;14610	14609					0.046850284833681144
GPRRQEALVE	10	Unmodified	_GPRRQEALVE_					0	0	0			REV__ENST00000544583.6_1_17:1090309-1090468:-|nuORF	REV__ENST00000544583.6_1_17:1090309-1090468:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.81884765625	2	577.817461	1153.62037	0.10823	6.254E-05	1.515	0.00087538	1.6232	0.00093792	577.8185345383566	111.81	0.23138	111.8	111.69	111.92	-0.015625					30	25	2	0	0	0	0.39935	1	29091	29091		3.5965	0.31518	1	77971	+		11445	22157	6509	6509	14611	14611					0.04970433623475401
GPRRQEALVE	10	Unmodified	_GPRRQEALVE_					0	0	0			REV__ENST00000544583.6_1_17:1090309-1090468:-|nuORF	REV__ENST00000544583.6_1_17:1090309-1090468:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	577.817461	1153.62037	-0.15622	-9.0266E-05	2.4169	0.0013965	2.2607	0.0013063	578.319748396769	111.85	0.21628	111.85	111.76	111.98	0	0.027824	0.00062863	NaN	3.5965	37	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90131	+		11446	22157	6509	6509							0.04970433623475401
GPRRQEALVE	10	Unmodified	_GPRRQEALVE_					0	0	0			REV__ENST00000544583.6_1_17:1090309-1090468:-|nuORF	REV__ENST00000544583.6_1_17:1090309-1090468:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	577.817461	1153.62037	0.10823	6.254E-05	1.515	0.00087538	1.6232	0.00093792	577.8185345383566	111.81	0.23138	111.8	111.69	111.92	-0.015625	-0.027824	-0.00041367	NaN	3.5965	30	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77971	+		11447	22157	6509	6509							0.04970433623475401
GPRRRPPLLPL	11	Unmodified	_GPRRRPPLLPL_					0	0	0		ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.6067199707031	3	424.606813	1270.79861	-0.038568	-1.6376E-05	-0.35801	-0.00015201	-0.39658	-0.00016839	424.6066265346987	37.94	1.149	38.031	37.609	38.758	0.090881					112	41	4	0	0	0	0.40701	1	7925	7925		10.315	0.55098	1	1228600			11448	5521	6510	6510	14612	14612					0.17404148333230296
GPRRRPPLLPL	11	Unmodified	_GPRRRPPLLPL_					0	0	0		ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.6065673828125	3	424.606813	1270.79861	-0.066256	-2.8133E-05	-0.34746	-0.00014753	-0.41371	-0.00017567	424.6066359918883	37.976	1.2309	38.074	37.578	38.808	0.097527					118	44	4	0	0	0	0.3826	1	7896	7896		13.519	3.7544	1	1195300			11449	5521	6510	6510	14613	14613					0.17404148333230296
GPRSADEADEL	11	Unmodified	_GPRSADEADEL_					0	0	0		nc|ENSG00000140320|Q8TBE0-3|BAHD1;nc|ENSG00000140320|Q8TBE0-2|BAHD1;ENSG00000140320|ENST00000416165|BAHD1	nc|ENSG00000140320|Q8TBE0-3|BAHD1	nc|ENSG00000140320|Q8TBE0-3|BAHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.26513671875	2	580.264924	1158.5153	0.15929	9.2432E-05	0.047813	2.7744E-05	0.20711	0.00012018	580.2650054839202	27.262	0.54442	27.251	27.07	27.614	-0.01156					32	18	3	0	0	0	0.31256	1	4616	4616		23.801	7.652	1	152750			11450	4293	6511	6511	14614	14614					-0.05762152363581663
GPRSQDPSL	9	Unmodified	_GPRSQDPSL_					0	0	0		nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7433776855469	2	478.743431	955.472308	0.099432	4.7603E-05	0.12935	6.1924E-05	0.22878	0.00010953	478.74341009255676	22.014	0.62668	22.014	21.763	22.39	0					49	22	3	0	0	0	0.074552	2	3034	2981;3034		43.772	36.506	1	447500			11451	4524	6512	6512	14615;14616	14616					-0.007208776303286868
GPRSQDPSL	9	Unmodified	_GPRSQDPSL_					0	0	0		nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.74359130859375	2	478.743431	955.472308	0.22437	0.00010741	0.16933	8.1068E-05	0.3937	0.00018848	478.743395664113	22.07	0.7832	21.97	21.716	22.499	-0.10034					66	28	3	0	0	0	0.03069	2	3004	3004;3049		60.074	13.669	1	436820			11452	4524	6512	6512	14617;14618	14617					-0.007208776303286868
GPRSQDPSL	9	Unmodified	_GPRSQDPSL_					0	0	0		nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	nc|ENSG00000143514|Q13625|TP53BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.743408203125	2	478.743431	955.472308	0.11998	5.7441E-05	0.15245	7.2983E-05	0.27243	0.00013042	478.7434254121342	22.025	0.65931	21.976	21.745	22.404	-0.049377					53	23	3	0	0	0	0.04299	1	3035	3035		55.503	9.8031	1	436840			11453	4524	6512	6512	14619	14619					-0.007208776303286868
GPRSSLRVL	9	Unmodified	_GPRSSLRVL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.80126953125	2	492.801083	983.587613	0.56736	0.00027959	-0.17898	-8.8204E-05	0.38837	0.00019139	492.8009813382566	29.192	1.6145	29.192	28.611	30.225	0					149	57	5	0	0	0	0.0028542	3	5213	5168;5213;5255		103.42	59.561	1	3975800			11454	7801	6513	6513	14620;14621;14622	14621					0.09516271291329303
GPRSSLRVL	9	Unmodified	_GPRSSLRVL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.80126953125	2	492.801083	983.587613	0.39279	0.00019357	-0.018788	-9.259E-06	0.374	0.00018431	492.80103662813923	29.191	1.5865	29.203	28.616	30.202	0.012266					147	54	5	0	0	0	0.0028542	3	5163	5163;5210;5254		103.42	65.445	1	4188200			11455	7801	6513	6513	14623;14624;14625	14623					0.09516271291329303
GPRSSLRVL	9	Unmodified	_GPRSSLRVL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8012390136719	2	492.801083	983.587613	0.19151	9.4375E-05	0.20827	0.00010264	0.39978	0.00019701	492.8011522097803	29.233	1.4458	29.247	28.674	30.12	0.013475					138	50	5	0	0	0	0.0028542	3	5165	5165;5214;5259		103.42	63.628	1	3974200			11456	7801	6513	6513	14626;14627;14628	14626					0.09516271291329303
GPRSSPAEL	9	Unmodified	_GPRSSPAEL_					0	0	0		ENSG00000033327|ENST00000361507|GAB2;nc|ENSG00000033327|Q9UQC2-2|GAB2	ENSG00000033327|ENST00000361507|GAB2	ENSG00000033327|ENST00000361507|GAB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.24041748046875	2	457.240524	912.466495	-0.073608	-3.3657E-05	-0.091338	-4.1764E-05	-0.16495	-7.542E-05	457.2404085265561	23.522	0.63359	23.522	23.224	23.857	0					40	21	3	0	0	0	0.24467	1	3490	3490		17.113	0.1706	1	127350			11457	561	6514	6514	14629	14629					0.0067602385800000775
GPRSSPAEL	9	Unmodified	_GPRSSPAEL_					0	0	0		ENSG00000033327|ENST00000361507|GAB2;nc|ENSG00000033327|Q9UQC2-2|GAB2	ENSG00000033327|ENST00000361507|GAB2	ENSG00000033327|ENST00000361507|GAB2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	457.240524	912.466495	-0.073608	-3.3657E-05	-0.091338	-4.1764E-05	-0.16495	-7.542E-05	457.2404085265561	23.522	0.63359	23.522	23.224	23.857	0	-0.04507	0.00011934	NaN	17.113	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127350			11458	561	6514	6514							0.0067602385800000775
GPRSTASDL	9	Unmodified	_GPRSTASDL_					0	0	0		nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENSG00000116786|ENST00000375799|PLEKHM2	nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2299499511719	2	452.230156	902.445759	0.0043781	1.9799E-06	-0.3479	-0.00015733	-0.34352	-0.00015535	452.23000555169824	18.61	0.9274	18.61	18.024	18.952	0					104	32	5	0	0	0	0.064268	1	2012	2012		47.594	1.5734	1	489240			11459	2751	6515	6515	14630	14630					-0.009365665216819252
GPRSTASDL	9	Unmodified	_GPRSTASDL_					0	0	0		nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENSG00000116786|ENST00000375799|PLEKHM2	nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2300109863281	2	452.230156	902.445759	-0.15829	-7.1582E-05	-0.24281	-0.0001098	-0.40109	-0.00018139	452.2300215863338	18.722	0.87158	18.664	18.087	18.958	-0.058174					102	30	5	0	0	0	0.05341	1	2019	2019		51.63	1.6968	1	515820			11460	2751	6515	6515	14631	14631					-0.009365665216819252
GPRTLFCTEVL	11	Unmodified	_GPRTLFCTEVL_					0	0	0		FLCN|p.F417Sfs*51|1|0.32|ENSG00000154803|chr17:17216430-17216430|A/-|frameshift_variant;nc|ENSG00000154803|Q8NFG4-3|FLCN;ENST00000389171.4_1_17:17129294-17135185:-|nuORF;nc|ENSG00000154803|Q8NFG4-2|FLCN;ENSG00000154803|ENST00000285071|FLCN	FLCN|p.F417Sfs*51|1|0.32|ENSG00000154803|chr17:17216430-17216430|A/-|frameshift_variant	FLCN|p.F417Sfs*51|1|0.32|ENSG00000154803|chr17:17216430-17216430|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.7346496582031	3	412.553274	1234.63799	0.17812	7.3484E-05	-0.59564	-0.00024573	-0.41752	-0.00017225	412.5530539714614	42.529	0.89515	42.621	41.957	42.853	0.091362					63	31	3	0	0	0	0.33296	1	9296	9296		1.2148	0	1	482160			11461	12343	6516	6516	14632	14632					0.030060128341574455
GPRTPTQPLL	10	Unmodified	_GPRTPTQPLL_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3143920898438	2	540.314023	1078.61349	0.65706	0.00035502	0.11517	6.223E-05	0.77223	0.00041725	540.3140535771036	40.362	1.6013	40.454	39.83	41.431	0.09267					101	58	2	0	0	0	0.067258	1	8624	8624		55.235	3.6048	1	3489600			11462	1129	6517	6517	14633	14633					0.0773312074295518
GPRVDGATARR	11	Unmodified	_GPRVDGATARR_					0	0	0		ENSG00000158805|ENST00000443381|ZNF276	ENSG00000158805|ENST00000443381|ZNF276	ENSG00000158805|ENST00000443381|ZNF276	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3195190429688	2	578.320703	1154.62685	0.38905	0.00022499	0.414	0.00023942	0.80304	0.00046442	578.320734328455	82.219	2.6522	82.219	81.302	83.954	0					240	103	3	0	0	0	0.43149	1	21253	21253		7.1017	1.3699	1	835630			11463	5374	6518	6518	14634	14634					0.055723715748854374
GPSGAVKLLE	10	Unmodified	_GPSGAVKLLE_					0	0	0			REV__SLC3A2|p.K300Rfs*31|1|0.36|ENSG00000168003|chr11:62882057-62882057|A/-|frameshift_variant	REV__SLC3A2|p.K300Rfs*31|1|0.36|ENSG00000168003|chr11:62882057-62882057|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7999572753906	2	485.782025	969.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.68	1	116.66	116.16	117.16	-0.022781								0	0	0	0.37664	1	30221	30221		3.5965	0.31518	1		+		11464	17430	6519	6519	14635	14635					0.06350340585993308
GPSGGRGAAL	10	Unmodified	_GPSGGRGAAL_					0	0	0		ENST00000322428.9_1_8:145159470-145159650:+|nuORF	ENST00000322428.9_1_8:145159470-145159650:+|nuORF	ENST00000322428.9_1_8:145159470-145159650:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7275085449219	2	421.727584	841.440614	-0.099028	-4.1763E-05	0.060249	2.5409E-05	-0.038779	-1.6354E-05	421.72754099030124	17.563	0.80898	17.563	17.318	18.127	0					67	27	3	0	0	0	0.024835	1	1712	1712		66.457	18.708	1	474510			11465	9393	6520	6520	14636	14636					0.013551744063761362
GPSGGRGAAL	10	Unmodified	_GPSGGRGAAL_					0	0	0		ENST00000322428.9_1_8:145159470-145159650:+|nuORF	ENST00000322428.9_1_8:145159470-145159650:+|nuORF	ENST00000322428.9_1_8:145159470-145159650:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7275085449219	2	421.727584	841.440614	-0.062964	-2.6554E-05	-0.039689	-1.6738E-05	-0.10265	-4.3292E-05	421.72750436203637	17.715	0.89852	17.654	17.384	18.283	-0.060431					67	31	3	0	0	0	0.02128	1	1752	1752		70.332	21.986	1	524050			11466	9393	6520	6520	14637	14637					0.013551744063761362
GPSGGRGAAL	10	Unmodified	_GPSGGRGAAL_					0	0	0		ENST00000322428.9_1_8:145159470-145159650:+|nuORF	ENST00000322428.9_1_8:145159470-145159650:+|nuORF	ENST00000322428.9_1_8:145159470-145159650:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	421.727584	841.440614	-0.18663	-7.8707E-05	0.090675	3.824E-05	-0.095955	-4.0467E-05	421.7275841442446	17.716	0.93984	17.598	17.355	18.295	-0.11739	-0.0069444	4.95E-05	NaN	70.332	64	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	586180			11467	9393	6520	6520							0.013551744063761362
GPSGLWSMWLM	11	Unmodified	_GPSGLWSMWLM_					0	0	0			REV__ENST00000396512.3_1_22:41911420-41911528:+|nuORF	REV__ENST00000396512.3_1_22:41911420-41911528:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.9057922363281	3	422.199955	1263.57804	0.055777	2.3549E-05	-0.027265	-1.1511E-05	0.028512	1.2038E-05	422.1997629024565	17.261	0.90045	17.201	16.971	17.872	-0.060429					64	31	3	0	0	0	0.33287	1	1675	1675		2.8433	0	1	155810	+		11468	20654	6521	6521	14638	14638					-0.043210011007431604
GPSGLWSMWLM	11	Unmodified	_GPSGLWSMWLM_					0	0	0			REV__ENST00000396512.3_1_22:41911420-41911528:+|nuORF	REV__ENST00000396512.3_1_22:41911420-41911528:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	422.199955	1263.57804	-0.20905	-8.8263E-05	0.40547	0.00017119	0.19642	8.2927E-05	422.1999992573313	17.368	0.87498	17.251	17.053	17.928	-0.11739	0.055525	0.00028309	NaN	2.8433	73	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178140	+		11469	20654	6521	6521							-0.043210011007431604
GPSKKTAKL	9	Unmodified	_GPSKKTAKL_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2921142578125	2	465.292559	928.570566	-0.36381	-0.00016928	-0.10536	-4.9021E-05	-0.46917	-0.0002183	465.29242505287493	12.566	0.41424	12.566	12.433	12.847	0					25	13	3	0	0	0	0.059067	1	162	162		49.527	29.074	1	183480			11470	3421	6522	6522	14639	14639					0.10342350685516521
GPSKKTAKL	9	Unmodified	_GPSKKTAKL_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2921447753906	2	465.292559	928.570566	-0.28307	-0.00013171	-0.11134	-5.1808E-05	-0.39441	-0.00018352	465.2923696595111	12.575	0.37564	12.478	12.356	12.731	-0.096607					28	12	4	0	0	0	0.12765	1	164	164		34.222	18.073	1	198260			11471	3421	6522	6522	14640	14640					0.10342350685516521
GPSKKTAKL	9	Unmodified	_GPSKKTAKL_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF;nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2921447753906	2	465.292559	928.570566	-0.24422	-0.00011363	0.013303	6.1898E-06	-0.23092	-0.00010744	465.29244102173953	12.599	0.44529	12.531	12.406	12.851	-0.067561					32	14	5	0	0	0	0.083138	1	170	170		40.725	24.576	1	195780			11472	3421	6522	6522	14641	14641					0.10342350685516521
GPSLIPQIK	9	Unmodified	_GPSLIPQIK_					0	0	0		ENSG00000135999|ENST00000258484|EPC2;ENST00000491099.1_1_2:149511519-149519500:+|nuORF	ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7955322265625	2	476.794935	951.575317	0.11854	5.6521E-05	0.17893	8.5314E-05	0.29748	0.00014184	476.7949184819114	41.72	0.81099	41.72	41.355	42.166	0					53	33	2	0	0	0	0.0037552	2	9004	9004;9085		96.285	3.7933	1	3613800			11473	3932	6523	6523	14642;14643	14642					0.09759234828277386
GPSPQRPHHHL	11	Unmodified	_GPSPQRPHHHL_					0	0	0			REV__nc|ENSG00000095637|Q9BX66-12|SORBS1	REV__nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.9057922363281	3	421.554889	1261.64284	-0.042925	-1.8095E-05	2.7809	0.0011723	2.738	0.0011542	421.5544475236164	17.69	0.17415	17.629	17.53	17.704	-0.060429					6	5	2	0	0	0	0.3322	1	1675	1675		4.7159	1.6437	1	5298.5	+		11474	22907	6524	6524	14644	14644					0.022480778118051603
GPSVLRSTL	9	Unmodified	_GPSVLRSTL_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.27484130859375	2	465.274367	928.53418	0.2076	9.6589E-05	1.2654	0.00058875	1.473	0.00068533	465.27486570804604	39.586	1.0178	39.686	39.128	40.146	0.099403					94	36	3	0	0	0	0.038291	1	8362	8362		57.249	25.981	1	1062900			11475	4353	6525	6525	14645	14645					0.06705473788792915
GPSVSQHSV	9	Unmodified	_GPSVSQHSV_					0	0	0			REV__ENSG00000085465|ENST00000369732|OVGP1	REV__ENSG00000085465|ENST00000369732|OVGP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7564392089844	2	449.224874	896.435195	-0.19833	-8.9096E-05	-0.46263	-0.00020782	-0.66096	-0.00029692	449.22468054521323	13.664	0.30272	13.565	13.416	13.718	-0.099291					13	10	2	0	0	0	0.26145	1	454	454		0.52476	0	1	11904	+		11476	13960	6526	6526	14646	14646					-0.017165491760920304
GPTARKWRG	9	Unmodified	_GPTARKWRG_					0	0	0		ENST00000336139.8_1_11:123600468-123601285:-|nuORF	ENST00000336139.8_1_11:123600468-123601285:-|nuORF	ENST00000336139.8_1_11:123600468-123601285:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2645263671875	2	514.79105	1027.56755	0.16832	8.665E-05	-1.0551	-0.00054316	-0.88679	-0.00045651	514.7903882570359	16.552	0.37872	16.49	16.351	16.729	-0.062534					18	12	2	0	0	0	0.25988	1	1409	1409		3.9444	1.6417	1	126810			11477	9484	6527	6527	14647	14647					0.054865203513600136
GPTKARPL	8	Unmodified	_GPTKARPL_					0	0	0		ENST00000556758.1_1_14:100317215-100349650:+|nuORF;ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1	ENST00000556758.1_1_14:100317215-100349650:+|nuORF	ENST00000556758.1_1_14:100317215-100349650:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2526550292969	2	420.25852	838.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.079	1	58.062	57.562	58.562	-0.0172								0	0	0	0.31676	1	14053	14053		26.341	3.8886	1				11478	843	6528	6528	14648	14648					0.07677525825499742
GPTLSAKIQFN	11	Unmodified	_GPTLSAKIQFN_					0	0	0		nc|ENSG00000112541|A8K010|LINC00473;ENST00000455853.1_1_6:166353685-166401023:-|nuORF	nc|ENSG00000112541|A8K010|LINC00473	nc|ENSG00000112541|A8K010|LINC00473	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3433227539062	2	588.324588	1174.63462	-0.075483	-4.4408E-05	-1.9677	-0.0011576	-2.0432	-0.001202	588.3231851241986	12.331	0.26665	12.263	12.167	12.434	-0.06806					22	8	3	0	0	0	0.47742	1	87	87		1.0715	0.5467	1	85194			11479	10692	6529	6529	14649	14649					0.05429086051799459
GPVGAQIWF	9	Unmodified	_GPVGAQIWF_					0	0	0			REV__ENSG00000104324|ENST00000220763|CPQ	REV__ENSG00000104324|ENST00000220763|CPQ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7695617675781	2	487.758352	973.502152	0.25492	0.00012434	-1.7827	-0.00086954	-1.5278	-0.0007452	487.7578042296359	23.174	0.63485	23.129	22.951	23.586	-0.044867					59	22	4	0	0	0	0.27532	1	3409	3409		12.532	0.89125	1	625070	+		11480	14403	6530	6530	14650	14650					0.014341061056597937
GPVLCRKQL	9	Unmodified	_GPVLCRKQL_					0	0	0			REV__ENSG00000164100|ENST00000296499|NDST3	REV__ENSG00000164100|ENST00000296499|NDST3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.3099060058594	2	507.299862	1012.58517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.206	1	95.204	94.704	95.704	-0.0020142								0	0	0	0.21726	1	25428	25428		16.942	6.1184	1		+		11481	17126	6531	6531	14651	14651					0.07938099561999934
GPVLHPLLTL	10	Unmodified	_GPVLHPLLTL_					0	0	0			REV__ENST00000439360.5_1_7:66119586-66132573:+|nuORF	REV__ENST00000439360.5_1_7:66119586-66132573:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7713623046875	2	530.331685	1058.64882	0.24129	0.00012796	-0.22427	-0.00011894	0.017018	9.0253E-06	530.3315717949052	76.689	0.44072	76.742	76.539	76.98	0.053413					21	15	2	0	0	0	0.30079	1	19755	19755		20.454	0.039092	1	100920	+		11482	21036	6532	6532	14652	14652					0.12183783270756976
GPVLHPLLTL	10	Unmodified	_GPVLHPLLTL_					0	0	0			REV__ENST00000439360.5_1_7:66119586-66132573:+|nuORF	REV__ENST00000439360.5_1_7:66119586-66132573:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	530.331685	1058.64882	0.68288	0.00036216	-0.28031	-0.00014866	0.40257	0.0002135	530.3316294043827	76.794	0.59299	76.762	76.452	77.045	-0.031487	0.031776	2.5201E-05	NaN	20.454	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117010	+		11483	21036	6532	6532							0.12183783270756976
GPVVPYLRL	9	Unmodified	_GPVVPYLRL_					0	0	0			REV__ENSG00000111012|ENST00000228606|CYP27B1	REV__ENSG00000111012|ENST00000228606|CYP27B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.3095397949219	2	507.310752	1012.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.873	1	95.873	95.373	96.373	0								0	0	0	0.25499	1	25601	25601		4.756	0.42677	1		+		11484	14698	6533	6533	14653	14653					0.10115227582218722
GPVVTAEGLH	10	Unmodified	_GPVVTAEGLH_					0	0	0		nc|ENSG00000169221|Q4KMP7-2|TBC1D10B;ENST00000475650.1_1_16:30369267-30370181:-|nuORF;ENSG00000169221|ENST00000409939|TBC1D10B	nc|ENSG00000169221|Q4KMP7-2|TBC1D10B	nc|ENSG00000169221|Q4KMP7-2|TBC1D10B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.25677490234375	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.309	1	94.307	93.807	94.807	-0.0020142								0	0	0	0.36922	1	25150	25150		6.7232	0.51738	1				11485	6336	6534	6534	14654	14654					0.023328834091330464
GPWAKARIQ	9	Unmodified	_GPWAKARIQ_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2576904296875	2	513.795801	1025.57705	0.30461	0.00015651	-2.9715	-0.0015267	-2.6668	-0.0013702	513.7941681432231	39.78	0.60398	39.872	39.416	40.02	0.09267					26	21	2	0	0	0	0.24311	1	8288	8288		16.942	10.219	1	140560			11486	1763	6535	6535	14655	14655					0.0652828863690047
GPWPGPQLYF	10	Unmodified	_GPWPGPQLYF_					0	0	0		ENSG00000276067.2,SLC23A4P,chr7,-,I13.1,135247218,135259761|118|5.01|1|intron	ENSG00000276067.2,SLC23A4P,chr7,-,I13.1,135247218,135259761|118|5.01|1|intron	ENSG00000276067.2,SLC23A4P,chr7,-,I13.1,135247218,135259761|118|5.01|1|intron	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.2891235351562	2	581.290017	1160.56548	0.40399	0.00023484	-0.27882	-0.00016207	0.12518	7.2765E-05	581.2898969409064	48.661	1.7382	48.661	48.156	49.894	0					148	62	4	0	0	0	0.24715	1	11314	11314		26.884	0.54238	1	6495300			11487	8723	6536	6536	14656	14656					-0.008379531770970061
GPWRASRWR	9	Unmodified	_GPWRASRWR_					0	0	0		ENST00000375050.5_1_6:32157573-32157942:-|nuORF	ENST00000375050.5_1_6:32157573-32157942:-|nuORF	ENST00000375050.5_1_6:32157573-32157942:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813720703125	2	586.315223	1170.61589	-0.064047	-3.7552E-05	-1.2983	-0.0007612	-1.3623	-0.00079875	586.3139589143764	102.33	0.17639	102.33	102.25	102.43	0					42	25	2	0	0	0	0.25938	1	27227	27227		1.8442	0	1	62863			11488	9907	6537	6537	14657	14657					0.03741013991270847
GPYGGGGQYF	10	Unmodified	_GPYGGGGQYF_					0	0	0		nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|541|494.37|0.0|25.56|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000424115.1_1_3:39377022-39377364:+|nuORF;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000452680.3_1_1:116399593-116399968:-|nuORF	nc|ENSG00000135486|P09651-3|HNRNPA1	nc|ENSG00000135486|P09651-3|HNRNPA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.25372314453125	2	501.719424	1001.4243	0.35719	0.00017921	-0.54353	-0.0002727	-0.18634	-9.3491E-05	501.7190565816066	51.733	0.52145	51.78	51.561	52.082	0.046574					33	18	2	0	0	0	0.31629	1	12175	12175		10.074	10.074	1	693830			11489	131	6538	6538	14658	14658					-0.07635951550378195
GPYGGGGQYF	10	Unmodified	_GPYGGGGQYF_					0	0	0		nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|541|494.37|0.0|25.56|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000424115.1_1_3:39377022-39377364:+|nuORF;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000452680.3_1_1:116399593-116399968:-|nuORF	nc|ENSG00000135486|P09651-3|HNRNPA1	nc|ENSG00000135486|P09651-3|HNRNPA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	501.719424	1001.4243	0.34622	0.0001737	-0.38154	-0.00019143	-0.03532	-1.7721E-05	501.7191223517488	51.763	0.53312	51.763	51.565	52.098	0	-0.063164	-0.00019916	NaN	19.257	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	708650			11490	131	6538	6538							-0.07635951550378195
GPYGGGGQYF	10	Unmodified	_GPYGGGGQYF_					0	0	0		nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|541|494.37|0.0|25.56|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000424115.1_1_3:39377022-39377364:+|nuORF;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000452680.3_1_1:116399593-116399968:-|nuORF	nc|ENSG00000135486|P09651-3|HNRNPA1	nc|ENSG00000135486|P09651-3|HNRNPA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	501.719424	1001.4243	0.14256	7.1523E-05	0.12269	6.1556E-05	0.26525	0.00013308	501.7193695302279	51.937	0.56387	51.936	51.71	52.274	-0.00080872	0.10981	0.0003068	NaN	19.257	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	606320			11491	131	6538	6538							-0.07635951550378195
GPYLEFLV	8	Unmodified	_GPYLEFLV_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.95928955078125	2	469.255111	936.49567	0.16657	7.8162E-05	0.068866	3.2316E-05	0.23543	0.00011048	469.25498791373457	89.955	0.92511	90.046	89.637	90.562	0.090668					178	72	3	0	0	0	0.29855	1	23896	23896		32.117	5.7757	1	1352400			11492	1762	6539	6539	14659	14659					0.024881681542865408
GPYPPKTTKPS	11	Unmodified	_GPYPPKTTKPS_					0	0	0			REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	REV__nc|ENSG00000184368|Q96T17-5|MAP7D2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8341674804688	2	586.819138	1171.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.632	1	81.701	81.201	82.201	0.068993								0	0	0	0.35034	1	21263	21263		8.1555	0.54658	1		+		11493	18314	6540	6540	14660	14660					0.04477683677509958
GPYVLIQL	8	Unmodified	_GPYVLIQL_					0	0	0			REV__ENST00000493283.5_1_5:71616260-71618028:+|nuORF	REV__ENST00000493283.5_1_5:71616260-71618028:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.77069091796875	2	451.770929	901.527304	0.34958	0.00015793	-0.29357	-0.00013263	0.056003	2.53E-05	451.7707685500365	83.656	0.65109	83.733	83.274	83.925	0.077095					42	25	2	0	0	0	0.2705	1	21884	21884		34.187	1.8818	1	193420	+		11494	13560	6541	6541	14661	14661					0.07260160908253965
GQALPAVAKKK	11	Unmodified	_GQALPAVAKKK_					0	0	0			REV__ENST00000467764.1_1_1:65341841-65342012:-|nuORF	REV__ENST00000467764.1_1_1:65341841-65342012:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.85546875	2	555.853316	1109.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.341	1	91.341	90.841	91.841	0								0	0	0	0.38126	1	24252	24252		1.1933	0.12188	1		+		11495	21307	6542	6542	14662	14662					0.14161973048021537
GQARLYHH	8	Unmodified	_GQARLYHH_					0	0	0		ENST00000396359.1_1_8:82193222-82195661:+|nuORF	ENST00000396359.1_1_8:82193222-82195661:+|nuORF	ENST00000396359.1_1_8:82193222-82195661:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7539978027344	2	491.2543	980.494047	0.020407	1.0025E-05	-1.9397	-0.00095289	-1.9193	-0.00094286	491.2532539325218	27.872	0.89748	27.872	27.38	28.277	0					83	30	3	0	0	0	0.4397	1	4891	4891		9.3474	0.60203	1	867700			11496	10113	6543	6543	14663	14663					0.003019719089024875
GQARRYLA	8	Unmodified	_GQARRYLA_					0	0	0			REV__ENSG00000171497|ENST00000307720|PPID	REV__ENSG00000171497|ENST00000307720|PPID	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7151184082031	2	467.764501	933.514448	0.19761	9.2433E-05	-0.59142	-0.00027664	-0.39381	-0.00018421	467.76415219034897	16.708	0.34028	16.645	16.414	16.754	-0.062534					18	11	2	0	0	0	0.3439	1	1382	1382		2.8892	2.8892	1	57705	+		11497	17645	6544	6544	14664	14664					0.04503142568705698
GQARRYLA	8	Unmodified	_GQARRYLA_					0	0	0			REV__ENSG00000171497|ENST00000307720|PPID	REV__ENSG00000171497|ENST00000307720|PPID	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	467.764501	933.514448	-0.067649	-3.1644E-05	-0.59367	-0.0002777	-0.66131	-0.00030934	467.7640580008116	16.653	0.22717	16.653	16.461	16.689	0	0.0066597	-6.7415E-05	NaN	2.8892	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48593	+		11498	17645	6544	6544							0.04503142568705698
GQARRYLA	8	Unmodified	_GQARRYLA_					0	0	0			REV__ENSG00000171497|ENST00000307720|PPID	REV__ENSG00000171497|ENST00000307720|PPID	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	467.764501	933.514448	-0.13025	-6.0927E-05	0.019883	9.3007E-06	-0.11037	-5.1626E-05	467.7642952939646	16.756	0.32817	16.641	16.421	16.749	-0.11434	-0.0053221	0.00050658	NaN	2.8892	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52443	+		11499	17645	6544	6544							0.04503142568705698
GQATFQQSK	9	Unmodified	_GQATFQQSK_					0	0	0		ENST00000429772.6_1_12:48357429-48359073:+|nuORF	ENST00000429772.6_1_12:48357429-48359073:+|nuORF	ENST00000429772.6_1_12:48357429-48359073:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.75146484375	2	497.751256	993.487959	0.095424	4.7498E-05	0.10013	4.9841E-05	0.19556	9.7338E-05	497.75120936337396	15.049	1.0195	15.049	14.478	15.498	0					57	35	3	0	0	0	0.018042	2	901	901;949		67.081	28.905	1	304660			11500	10456	6545	6545	14665;14666	14665					-0.009045911132830042
GQATFQQSK	9	Unmodified	_GQATFQQSK_					0	0	0		ENST00000429772.6_1_12:48357429-48359073:+|nuORF	ENST00000429772.6_1_12:48357429-48359073:+|nuORF	ENST00000429772.6_1_12:48357429-48359073:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7513122558594	2	497.751256	993.487959	0.16838	8.3813E-05	0.056619	2.8182E-05	0.225	0.00011199	497.7512032586718	15.143	0.56041	15.033	14.847	15.408	-0.10982					41	19	3	0	0	0	0.13296	1	976	976		33.445	7.1768	1	375230			11501	10456	6545	6545	14667	14667					-0.009045911132830042
GQATFQQSK	9	Unmodified	_GQATFQQSK_					0	0	0		ENST00000429772.6_1_12:48357429-48359073:+|nuORF	ENST00000429772.6_1_12:48357429-48359073:+|nuORF	ENST00000429772.6_1_12:48357429-48359073:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.751220703125	2	497.751256	993.487959	0.05873	2.9233E-05	0.10578	5.2651E-05	0.16451	8.1884E-05	497.75122143329736	15.185	0.43561	15.121	14.955	15.391	-0.064413					31	14	3	0	0	0	0.018042	1	967	967		67.081	34.295	1	328900			11502	10456	6545	6545	14668	14668					-0.009045911132830042
GQAVALRAK	9	Unmodified	_GQAVALRAK_					0	0	0		ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7667541503906	2	457.282526	912.550499	-0.10601	-4.8474E-05	-2.04	-0.00093284	-2.146	-0.00098131	457.28136900783824	15.818	0.26431	15.818	15.654	15.918	0					17	9	2	0	0	0	0.24848	1	1160	1160		13.906	1.3745	1	67206			11503	5420	6546	6546	14669	14669					0.09072599745547905
GQAVALRAK	9	Unmodified	_GQAVALRAK_					0	0	0		ENST00000511907.1_1_4:1208072-1210006:-|nuORF;ENSG00000159692|ENST00000382952|CTBP1;nc|ENSG00000159692|Q13363|CTBP1	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	ENST00000511907.1_1_4:1208072-1210006:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7664489746094	2	457.282526	912.550499	-0.070303	-3.2149E-05	-1.2804	-0.00058549	-1.3507	-0.00061763	457.2817893097354	15.916	0.31534	15.801	15.635	15.95	-0.11434					22	10	3	0	0	0	0.23784	1	1162	1162		19.257	8.4331	1	88846			11504	5420	6546	6546	14670	14670					0.09072599745547905
GQDILFVFPK	10	Unmodified	_GQDILFVFPK_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.802001953125	2	582.326599	1162.63865	0.10719	6.2419E-05	0.26255	0.00015289	0.36974	0.00021531	582.326658736066	69.564	0.42056	69.564	69.339	69.76	0					20	14	2	0	0	0	0.27655	1	17603	17603		30.703	22.548	1	151360			11505	4660	6547	6547	14671	14671					0.06383175545511222
GQDILFVFPK	10	Unmodified	_GQDILFVFPK_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	582.326599	1162.63865	0.13418	7.8137E-05	0.29556	0.00017211	0.42974	0.00025025	582.3265680840537	69.533	0.34095	69.599	69.428	69.769	0.06604	0.0079722	1.2173E-05	NaN	30.703	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175400			11506	4660	6547	6547							0.06383175545511222
GQDILFVFPK	10	Unmodified	_GQDILFVFPK_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	582.326599	1162.63865	0.20701	0.00012055	0.31468	0.00018324	0.52168	0.00030379	582.3267072536103	69.631	0.35083	69.609	69.378	69.729	-0.022087	0.018796	3.444E-05	NaN	30.703	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183250			11507	4660	6547	6547							0.06383175545511222
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.85986328125	2	641.859326	1281.7041	-0.01128	-7.2404E-06	0.14322	9.193E-05	0.13194	8.4689E-05	641.8597453464644	103.26	0.70338	103.26	102.85	103.56	0					592	102	7	0	0	0	0.43149	1	27462	27462		7.1017	0.90987	1	107790000	+		11508	22719	6548	6548	14672	14672					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8598022460938	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.59	1	105.59	105.09	106.09	0								0	0	0	0.36517	1	27956	27956		4.897	0	1		+		11509	22719	6548	6548	14673	14673					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8580322265625	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.72	1	105.72	105.22	106.22	0								0	0	0	0.36517	1	27985	27985		4.897	0	1		+		11510	22719	6548	6548	14674	14674					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8580322265625	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.86	1	105.86	105.36	106.36	0								0	0	0	0.36517	1	28012	28012		4.897	0	1		+		11511	22719	6548	6548	14675	14675					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8594970703125	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.97	1	112.97	112.47	113.47	0								0	0	0	0.36517	1	29349	29349		4.897	0	1		+		11512	22719	6548	6548	14676	14676					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8593139648438	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.79	1	113.79	113.29	114.29	0								0	0	0	0.36517	1	29549	29549		4.897	0	1		+		11513	22719	6548	6548	14677	14677					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.858642578125	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.34	1	114.34	113.84	114.84	0								0	0	0	0.36517	1	29668	29668		4.897	0	1		+		11514	22719	6548	6548	14678	14678					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8599853515625	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.06	1	118.06	117.56	118.56	0								0	0	0	0.36517	1	30510	30510		4.897	0	1		+		11515	22719	6548	6548	14679	14679					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8820190429688	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.08	1	117.06	116.56	117.56	-0.022781								0	0	0	0.36517	1	30315	30315		4.897	0	1		+		11516	22719	6548	6548	14680	14680					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8817138671875	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.67	1	118.64	118.14	119.14	-0.024147								0	0	0	0.36517	1	30666	30666		4.897	0	1		+		11517	22719	6548	6548	14681	14681					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.882080078125	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.66	1	119.63	119.13	120.13	-0.024361								0	0	0	0.36517	1	30884	30884		4.897	0	1		+		11518	22719	6548	6548	14682	14682					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8824462890625	2	641.859326	1281.7041	0.25581	0.0001642	-0.076693	-4.9226E-05	0.17912	0.00011497	641.8588662762547	115.47	0.16203	115.45	115.36	115.52	-0.020988					28	19	2	0	0	0	0.33175	1	29950	29950		4.897	0	1	25479	+		11519	22719	6548	6548	14683	14683					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3618774414062	2	641.859326	1281.7041	0.42396	0.00027212	-0.0025291	-1.6233E-06	0.42143	0.0002705	641.8590275740343	105.86	0.75201	105.86	105.44	106.19	0.0031738					219	108	3	0	0	0	0.44828	4	28025	28025;28037;28040;28064		4.897	0	1	294710	+		11520	22719	6548	6548	14684;14685;14686;14687	14684					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8585815429688	2	641.859326	1281.7041	0.4244	0.00027241	-0.10825	-6.9482E-05	0.31615	0.00020293	641.8590420715207	112.96	1.1885	112.98	112.48	113.67	0.014824					291	143	3	0	0	0	0.44828	9	29315	29315;29345;29374;29376;29413;29445;29478;29507;29536		4.897	0	1	117330	+		11521	22719	6548	6548	14688;14689;14690;14691;14692;14693;14694;14695;14696	14688					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8598022460938	2	641.859326	1281.7041	0.42781	0.00027459	-0.19066	-0.00012238	0.23715	0.00015222	641.8587923854246	115.65	0.25196	115.67	115.59	115.84	0.018738					40	28	2	0	0	0	0.44828	1	30049	30049		4.897	0	1	26263	+		11522	22719	6548	6548	14697	14697					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8580932617188	2	641.859326	1281.7041	0.42789	0.00027465	-0.48634	-0.00031216	-0.058445	-3.7514E-05	641.8584939871803	116.21	0.21964	116.23	116.14	116.36	0.020988					30	25	2	0	0	0	0.44828	1	30160	30160		4.897	0	1	80003	+		11523	22719	6548	6548	14698	14698					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.859130859375	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.7	1	113.71	113.21	114.21	0.014824								0	0	0	0.36517	1	29580	29580		4.897	0	1		+		11524	22719	6548	6548	14699	14699					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.859130859375	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.89	1	113.91	113.41	114.41	0.016708								0	0	0	0.36517	1	29627	29627		4.897	0	1		+		11525	22719	6548	6548	14700	14700					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8595581054688	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.05	1	114.06	113.56	114.56	0.016708								0	0	0	0.36517	1	29666	29666		4.897	0	1		+		11526	22719	6548	6548	14701	14701					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.859619140625	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.17	1	114.18	113.68	114.68	0.016708								0	0	0	0.36517	1	29695	29695		4.897	0	1		+		11527	22719	6548	6548	14702	14702					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8594360351562	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.69	1	114.71	114.21	115.21	0.016708								0	0	0	0.36517	1	29822	29822		4.897	0	1		+		11528	22719	6548	6548	14703	14703					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8815307617188	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.47	1	117.49	116.99	117.99	0.023476								0	0	0	0.36517	1	30446	30446		4.897	0	1		+		11529	22719	6548	6548	14704	14704					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8820190429688	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.48	1	118.51	118.01	119.01	0.026253								0	0	0	0.36517	1	30680	30680		4.897	0	1		+		11530	22719	6548	6548	14705	14705					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8818359375	2	641.859326	1281.7041	0.42781	0.00027459	-0.19066	-0.00012238	0.23715	0.00015222	641.8587923854246	115.65	0.25196	115.67	115.59	115.84	0.018738					40	28	2	0	0	0	0.33175	1	30060	30060		4.897	0	1	26263	+		11531	22719	6548	6548	14706	14706					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3621215820312	2	641.859326	1281.7041	0.4244	0.00027241	-0.10825	-6.9482E-05	0.31615	0.00020293	641.8590420715207	112.96	1.1885	112.98	112.48	113.67	0.014824					291	143	3	0	0	0	0.33175	1	29374	29374		4.897	0	1	117330	+		11532	22719	6548	6548	14707	14707					0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	641.859326	1281.7041	0.25687	0.00016488	0.13704	8.7961E-05	0.39391	0.00025284	641.8591864175752	116.01	0.12003	115.99	115.95	116.07	-0.020988	-0.1178	0.00029796	NaN	4.897	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23812	+		11533	22719	6548	6548							0.07451545000549231
GQDNRPELLKL	11	Unmodified	_GQDNRPELLKL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|204|3|anti-sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	641.859326	1281.7041	0.42789	0.00027465	-0.48634	-0.00031216	-0.058445	-3.7514E-05	641.8584939871803	116.21	0.21964	116.23	116.14	116.36	0.020988	0.1178	-0.00050229	NaN	4.897	30	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80003	+		11534	22719	6548	6548							0.07451545000549231
GQEIEVSLYT	10	Unmodified	_GQEIEVSLYT_					0	0	0		ENSG00000073969|ENST00000398238|NSF	ENSG00000073969|ENST00000398238|NSF	ENSG00000073969|ENST00000398238|NSF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.7850952148438	2	569.784961	1137.55537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.058	1	26.058	25.558	26.558	0								0	0	0	0.3726	1	4238	4238		5.2969	1.7004	1				11535	1010	6549	6549	14708	14708					-0.00790605692986901
GQELFSTDL	9	Unmodified	_GQELFSTDL_					0	0	0			REV__ENSG00000110921|ENST00000228510|MVK	REV__ENSG00000110921|ENST00000228510|MVK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2637939453125	2	505.245472	1008.47639	0.46056	0.00023269	0.1253	6.3307E-05	0.58585	0.000296	505.24553449119543	76.55	0.23006	76.519	76.452	76.682	-0.031487					10	7	2	0	0	0	0.1939	1	19710	19710		30.637	0	1	144120	+		11536	14693	6550	6550	14709	14709					-0.027508329272677656
GQFEQHFQH	9	Unmodified	_GQFEQHFQH_					0	0	0		ENST00000474985.5_1_2:33809845-33813599:-|nuORF;ENSG00000119812|ENST00000238823|FAM98A	ENST00000474985.5_1_2:33809845-33813599:-|nuORF	ENST00000474985.5_1_2:33809845-33813599:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.2451782226562	2	579.259779	1156.50501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.461	1	25.405	24.905	25.905	-0.055931								0	0	0	0.25331	1	4062	4062		5.2969	1.7004	1				11537	2909	6551	6551	14710	14710					-0.06698670507489624
GQFIGPHRIK	10	Unmodified	_GQFIGPHRIK_					0	0	0		nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF	nc|ENSG00000198431|Q16881-7|TXNRD1	nc|ENSG00000198431|Q16881-7|TXNRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.83544921875	2	576.835457	1151.65636	0.013253	7.6447E-06	0.33092	0.00019089	0.34417	0.00019853	576.8354211573775	23.129	0.5758	23.129	22.904	23.48	0					54	19	4	0	0	0	0.02128	1	3366	3366		70.332	55.084	1	338130			11538	8074	6552	6552	14711	14711					0.08659935591003887
GQFIGPHRIK	10	Unmodified	_GQFIGPHRIK_					0	0	0		nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF	nc|ENSG00000198431|Q16881-7|TXNRD1	nc|ENSG00000198431|Q16881-7|TXNRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8353881835938	2	576.835457	1151.65636	0.15261	8.8031E-05	0.14478	8.3514E-05	0.29739	0.00017154	576.835349798089	23.252	0.60613	23.164	22.853	23.459	-0.08761					64	21	5	0	0	0	0.075619	1	3401	3401		53.404	42.58	1	293800			11539	8074	6552	6552	14712	14712					0.08659935591003887
GQFIGPHRIK	10	Unmodified	_GQFIGPHRIK_					0	0	0		nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF	nc|ENSG00000198431|Q16881-7|TXNRD1	nc|ENSG00000198431|Q16881-7|TXNRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.83544921875	2	576.835457	1151.65636	0.2207	0.00012731	0.14014	8.0839E-05	0.36084	0.00020815	576.8353463143142	23.267	0.55073	23.222	22.977	23.528	-0.044867					56	19	4	0	0	0	0.055898	1	3395	3395		57.722	41.875	1	311950			11540	8074	6552	6552	14713	14713					0.08659935591003887
GQFKDIITK	9	Unmodified	_GQFKDIITK_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2755126953125	2	525.303124	1048.5917	0.30056	0.00015789	0.56153	0.00029498	0.8621	0.00045286	525.8051107689549	31.517	0.31095	31.559	31.372	31.683	0.042364					15	10	2	0	0	0	0.2422	1	5895	5895		10.151	4.9199	1	342040			11541	4369;923	6553	6553	14714	14714					0.06934315994340068
GQFSGFPFEK	10	Unmodified	_GQFSGFPFEK_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.27685546875	2	572.277106	1142.53966	0.53466	0.00030597	-0.38622	-0.00022103	0.14843	8.4946E-05	572.2767303754007	56.418	1.0145	56.418	56.101	57.116	0					107	32	4	0	0	0	2.1585E-14	3	13552	13505;13552;13604		200.78	145.55	1	4205300			11542	3185	6554	6554	14715;14716;14717	14716					-0.02590847419378406
GQFSGFPFEK	10	Unmodified	_GQFSGFPFEK_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2769775390625	2	572.277106	1142.53966	0.79349	0.0004541	-0.47746	-0.00027324	0.31603	0.00018086	572.276701435132	56.36	0.98371	56.439	56.085	57.068	0.078674					98	32	4	0	0	0	1.8493E-20	4	13530	13479;13530;13584;13648		213.63	144.53	1	5083400			11543	3185	6554	6554	14718;14719;14720;14721	14719					-0.02590847419378406
GQFSGFPFEK	10	Unmodified	_GQFSGFPFEK_					0	0	0		nc|ENSG00000124795|P35659-2|DEK;ENSG00000124795|ENST00000652689|DEK	nc|ENSG00000124795|P35659-2|DEK	nc|ENSG00000124795|P35659-2|DEK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2769165039062	2	572.277106	1142.53966	0.85593	0.00048983	-0.59279	-0.00033924	0.26314	0.00015059	572.2765860074188	56.647	0.95649	56.628	56.239	57.196	-0.019081					108	34	4	0	0	0	2.1585E-14	3	13604	13553;13604;13655		200.78	140.71	1	4303500			11544	3185	6554	6554	14722;14723;14724	14723					-0.02590847419378406
GQFSLPIDK	9	Unmodified	_GQFSLPIDK_					0	0	0		ENSG00000135677|ENST00000258145|GNS;nc|ENSG00000135677|P15586-2|GNS	ENSG00000135677|ENST00000258145|GNS	ENSG00000135677|ENST00000258145|GNS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7743225097656	2	502.7742	1003.53385	0.34402	0.00017296	0.1381	6.9435E-05	0.48212	0.0002424	502.77408774841433	49.852	0.7249	49.852	49.542	50.267	0					81	26	5	0	0	0	0.010888	1	11517	11517		78.06	8.9556	1	1325600			11545	3892	6555	6555	14725	14725					0.03222054068953639
GQFSLPIDK	9	Unmodified	_GQFSLPIDK_					0	0	0		ENSG00000135677|ENST00000258145|GNS;nc|ENSG00000135677|P15586-2|GNS	ENSG00000135677|ENST00000258145|GNS	ENSG00000135677|ENST00000258145|GNS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7743225097656	2	502.7742	1003.53385	0.38644	0.00019429	-0.054845	-2.7575E-05	0.33159	0.00016672	502.7740573665946	49.791	0.89299	49.836	49.425	50.318	0.044891					74	33	4	0	0	0	0.014058	2	11527	11471;11527		73.196	13.122	1	1613700			11546	3892	6555	6555	14726;14727	14727					0.03222054068953639
GQFSLPIDK	9	Unmodified	_GQFSLPIDK_					0	0	0		ENSG00000135677|ENST00000258145|GNS;nc|ENSG00000135677|P15586-2|GNS	ENSG00000135677|ENST00000258145|GNS	ENSG00000135677|ENST00000258145|GNS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.7744445800781	2	502.7742	1003.53385	0.39872	0.00020046	0.025596	1.2869E-05	0.42431	0.00021333	502.77408034772293	49.828	0.82433	49.849	49.511	50.335	0.020691					90	30	4	0	0	0	0.0083763	2	11506	11460;11506		81.915	12.81	1	1394700			11547	3892	6555	6555	14728;14729	14729					0.03222054068953639
GQGGALLLVAV	11	Unmodified	_GQGGALLLVAV_					0	0	0			REV__nc|ENSG00000117143|Q16222-2|UAP1	REV__nc|ENSG00000117143|Q16222-2|UAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7960205078125	2	499.305667	996.596781	0.045478	2.2708E-05	-1.2244	-0.00061136	-1.1789	-0.00058865	499.3050480373164	13.656	0.39517	13.656	13.537	13.932	0					24	13	3	0	0	0	0.33324	1	485	485		1.1933	0	1	82050	+		11548	14956	6556	6556	14730	14730					0.09834619856985682
GQGKTKRSVI	10	Unmodified	_GQGKTKRSVI_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;ENST00000415664.2_21:10987833-11013471:-|nuORF	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7842407226562	2	537.324922	1072.63529	0.40464	0.00021742	0.44141	0.00023718	0.84605	0.0004546	537.3250101079003	27.118	0.45479	27.118	26.925	27.38	0					26	15	3	0	0	0	0.31745	1	4551	4551		8.7454	1.4562	1	120330			11549	706	6557	6557	14731	14731					0.10187925491527494
GQGLKWGHK	9	Unmodified	_GQGLKWGHK_					0	0	0			REV__ENSG00000186566|ENST00000591680|GPATCH8	REV__ENSG00000186566|ENST00000591680|GPATCH8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7977600097656	2	505.780151	1009.54575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.216	1	69.216	68.716	69.716	0								0	0	0	0.20238	1	17480	17480		21.747	0	1		+		11550	18453	6558	6558	14732	14732					0.04135715602797063
GQGSYFAKK	9	Unmodified	_GQGSYFAKK_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.2591857910156	2	493.258717	984.50288	0.21552	0.00010631	0.42606	0.00021016	0.64159	0.00031647	493.25884215609193	16.054	0.42815	15.991	15.838	16.266	-0.062534					22	14	2	0	0	0	0.29638	1	1229	1229		9.3831	2.0939	1	81289			11551	5717	6559	6559	14733	14733					0.010009007547068904
GQGTFTKIFK	10	Unmodified	_GQGTFTKIFK_					0	0	0		ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.816162109375	2	563.816399	1125.61824	0.64748	0.00036506	-0.49627	-0.00027981	0.15121	8.5255E-05	563.816030768384	37.228	0.92194	37.228	36.724	37.646	0					79	32	3	0	0	0	3.3863E-05	2	7669	7620;7669		135.86	99.357	1	1414300			11552	1470	6560	6560	14734;14735	14735					0.060460048857066795
GQGTFTKIFK	10	Unmodified	_GQGTFTKIFK_					0	0	0		ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8164672851562	2	563.816399	1125.61824	0.44752	0.00025232	-0.24229	-0.00013661	0.20523	0.00011571	563.816220631479	37.099	1.2249	37.186	36.516	37.741	0.087406					88	44	3	0	0	0	1.716E-08	2	7583	7583;7633		159.1	115.24	1	1248200			11553	1470	6560	6560	14736;14737	14736					0.060460048857066795
GQGTFTKIFK	10	Unmodified	_GQGTFTKIFK_					0	0	0		ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.8165283203125	2	563.816399	1125.61824	0.47386	0.00026717	-0.27575	-0.00015547	0.1981	0.00011169	563.8162194422432	37.12	1.0563	37.213	36.567	37.624	0.093018					79	38	3	0	0	0	4.613E-09	2	7573	7573;7621		174.48	118.98	1	1398500			11554	1470	6560	6560	14738;14739	14738					0.060460048857066795
GQGVNNVPK	9	Unmodified	_GQGVNNVPK_					0	0	0		nc|ENSG00000179119|Q68D10-3|SPTY2D1;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	nc|ENSG00000179119|Q68D10-3|SPTY2D1	nc|ENSG00000179119|Q68D10-3|SPTY2D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.74853515625	2	456.748516	911.482479	0.085886	3.9228E-05	0.051133	2.3355E-05	0.13702	6.2583E-05	456.74851504327046	17.285	1.2097	17.285	16.867	18.077	0					111	41	4	0	0	0	0.0018995	3	1563	1563;1605;1736		111.29	55.11	1	1298300			11555	7104	6561	6561	14740;14741;14742	14740					0.02319730094905026
GQGVNNVPK	9	Unmodified	_GQGVNNVPK_					0	0	0		nc|ENSG00000179119|Q68D10-3|SPTY2D1;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	nc|ENSG00000179119|Q68D10-3|SPTY2D1	nc|ENSG00000179119|Q68D10-3|SPTY2D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.74859619140625	2	456.748516	911.482479	-0.049153	-2.2451E-05	0.20366	9.3022E-05	0.15451	7.0571E-05	456.7485897014355	17.457	1.156	17.34	16.909	18.065	-0.11739					103	40	4	0	0	0	0.0023784	2	1666	1619;1666		107.19	53.354	1	1331400			11556	7104	6561	6561	14743;14744	14744					0.02319730094905026
GQGVNNVPK	9	Unmodified	_GQGVNNVPK_					0	0	0		nc|ENSG00000179119|Q68D10-3|SPTY2D1;ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	nc|ENSG00000179119|Q68D10-3|SPTY2D1	nc|ENSG00000179119|Q68D10-3|SPTY2D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.74853515625	2	456.748516	911.482479	0.15233	6.9577E-05	0.087494	3.9963E-05	0.23983	0.00010954	456.74849831231575	17.394	1.0569	17.333	16.971	18.028	-0.060429					108	37	4	0	0	0	0.0018995	2	1584	1584;1629		111.29	55.11	1	1298900			11557	7104	6561	6561	14745;14746	14745					0.02319730094905026
GQHCPILTVI	10	Unmodified	_GQHCPILTVI_					0	0	0		ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.800537109375	2	540.797152	1079.57975	0.71212	0.00038511	2	0.0010816	2.7121	0.0014667	541.3006274822164	91.374	1.0572	91.375	91.185	92.242	0.00046539					132	68	4	0	0	0	0.37454	1	24238	24238		8.1555	0.24537	1	252290			11558	1873	6562	6562	14747	14747					0.043143759795157166
GQIDKEAVQK	10	Unmodified	_GQIDKEAVQK_					0	0	0		nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3064575195312	2	558.306395	1114.59824	0.044276	2.472E-05	0.10093	5.6347E-05	0.1452	8.1067E-05	558.306491213919	15.418	0.63508	15.418	15.127	15.763	0					43	21	3	0	0	0	0.28078	1	1045	1045		22.775	13.231	1	124240			11559	853	6563	6563	14748	14748					0.04552209155099263
GQIDKEAVQK	10	Unmodified	_GQIDKEAVQK_					0	0	0		nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3064575195312	2	558.306395	1114.59824	0.12378	6.9105E-05	0.070087	3.913E-05	0.19386	0.00010824	558.3063590616995	15.598	0.46756	15.488	15.285	15.753	-0.10981					35	15	3	0	0	0	0.2361	1	1095	1095		28.234	14.619	1	124370			11560	853	6563	6563	14749	14749					0.04552209155099263
GQIDKEAVQK	10	Unmodified	_GQIDKEAVQK_					0	0	0		nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3064575195312	2	558.306395	1114.59824	0.00062015	3.4624E-07	0.36262	0.00020245	0.36324	0.0002028	558.306514773712	15.533	0.50409	15.469	15.275	15.779	-0.064413					33	16	3	0	0	0	0.30815	1	1070	1070		21.799	14.698	1	151650			11561	853	6563	6563	14750	14750					0.04552209155099263
GQILSRKPKP	10	Unmodified	_GQILSRKPKP_					0	0	0		nc|ENSG00000138376|Q99728-3|BARD1;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7788696289062	2	562.35094	1122.68733	0.018685	1.0507E-05	-0.080672	-4.5366E-05	-0.061987	-3.4859E-05	562.3508914313389	39.804	0.53823	39.804	39.54	40.078	0					37	19	3	0	0	0	0.32033	1	8390	8390		3.5965	0	1	253640			11562	4142	6564	6564	14751	14751					0.13089088905257995
GQIRESIK	8	Unmodified	_GQIRESIK_					0	0	0			REV__ENST00000521972.1_1_8:59496667-59498469:-|nuORF	REV__ENST00000521972.1_1_8:59496667-59498469:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2816467285156	2	465.771991	929.529429	-0.18577	-8.6526E-05	-0.36069	-0.000168	-0.54646	-0.00025452	465.77182561422853	16.141	0.8946	16.027	15.692	16.586	-0.11434					55	30	2	0	0	0	0.42371	1	1184	1184		14.838	0	1	303890	+		11563	13506	6565	6565	14752	14752					0.061845896460340555
GQISVVISK	9	Unmodified	_GQISVVISK_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.78436279296875	2	465.784567	929.554582	0.094211	4.3882E-05	0.22329	0.000104	0.3175	0.00014789	465.7845821364917	36.31	0.52722	36.31	36.117	36.644	0					26	18	2	0	0	0	0.043673	1	7373	7373		55.249	18.174	1	398640			11564	717	6566	6566	14753	14753					0.08698644448611503
GQISVVISK	9	Unmodified	_GQISVVISK_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7848205566406	2	465.784567	929.554582	0.18203	8.4785E-05	0.024742	1.1525E-05	0.20677	9.631E-05	465.78448919824746	36.16	0.53169	36.243	36.09	36.621	0.082359					29	18	2	0	0	0	0.072885	1	7346	7346		44.392	7.3173	1	378090			11565	717	6566	6566	14754	14754					0.08698644448611503
GQISVVISK	9	Unmodified	_GQISVVISK_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	465.784567	929.554582	0.5036	0.00023457	-0.19013	-8.8561E-05	0.31346	0.00014601	465.7842994941996	36.184	0.41862	36.27	36.085	36.503	0.086246	-0.0042366	-0.00021385	NaN	55.249	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436320			11566	717	6566	6566							0.08698644448611503
GQKAKRLN	8	Unmodified	_GQKAKRLN_					0	0	0			REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF	REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7381896972656	2	457.780151	913.545748	0.049922	2.2853E-05	0.35555	0.00016276	0.40547	0.00018562	457.7802958629598	17.522	0.95545	17.522	17.122	18.077	0					51	32	2	0	0	0	0.32435	1	1550	1550		23.148	5.0134	1	97636	+		11567	18111	6567	6567	14755	14755					0.08551715602789045
GQKAKRLN	8	Unmodified	_GQKAKRLN_					0	0	0			REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF	REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7381286621094	2	457.780151	913.545748	0.16808	7.6943E-05	-0.041799	-1.9135E-05	0.12628	5.7808E-05	457.7799324780673	17.422	0.31458	17.362	17.129	17.444	-0.060429					17	10	2	0	0	0	0.33993	1	1577	1577		16.942	4.4107	1	41681	+		11568	18111	6567	6567	14756	14756					0.08551715602789045
GQKPNFVI	8	Unmodified	_GQKPNFVI_					0	0	0		ENSG00000141337|ENST00000621439|ARSG	ENSG00000141337|ENST00000621439|ARSG	ENSG00000141337|ENST00000621439|ARSG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7708435058594	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.301	1	86.292	85.792	86.792	-0.0090027								0	0	0	0.36169	1	22691	22691		9.3474	0	1				11569	4367	6568	6568	14757	14757					0.0474610610565378
GQKQLQQI	8	Unmodified	_GQKQLQQI_					0	0	0		ENSG00000268223|ENST00000686077|ARL14EPL	ENSG00000268223|ENST00000686077|ARL14EPL	ENSG00000268223|ENST00000686077|ARL14EPL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.76959228515625	2	471.771991	941.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.514	1	74.567	74.067	75.067	0.052361								0	0	0	0.33122	1	19091	19091		23.148	2.6948	1				11570	8685	6569	6569	14758	14758					0.05632589646052111
GQKSRKCYKY	10	Unmodified	_GQKSRKCYKY_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.5008239746094	3	420.888768	1259.64448	-0.30895	-0.00013003	0.54428	0.00022908	0.23533	9.9047E-05	420.8888031618151	14.13	0.26022	14.025	13.845	14.105	-0.10466					15	8	2	0	0	0	0.31958	1	648	648		2.8433	0.3448	1	88104	+		11571	14898	6570	6570	14759	14759					0.025039507855353804
GQLENAEQLFK	11	Unmodified	_GQLENAEQLFK_					0	0	0		ENST00000497842.6_1_17:15903346-15927855:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19	ENST00000497842.6_1_17:15903346-15927855:+|nuORF	ENST00000497842.6_1_17:15903346-15927855:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.8146362304688	2	638.830234	1275.64592	0.56968	0.00036393	-0.34331	-0.00021932	0.22637	0.00014461	638.8300423912447	53.728	0.34518	53.728	53.568	53.914	0					22	12	2	0	0	0	0.14667	1	12744	12744		35.996	19.054	1	275760			11572	439	6571	6571	14760	14760					0.019118633552579922
GQLENAEQLFK	11	Unmodified	_GQLENAEQLFK_					0	0	0		ENST00000497842.6_1_17:15903346-15927855:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19	ENST00000497842.6_1_17:15903346-15927855:+|nuORF	ENST00000497842.6_1_17:15903346-15927855:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.814453125	2	638.830234	1275.64592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.723	1	53.779	53.279	54.279	0.056255								0	0	0	1.7572E-05	1	12706	12706		94.801	62.015	1				11573	439	6571	6571	14761	14761					0.019118633552579922
GQLENAEQLFK	11	Unmodified	_GQLENAEQLFK_					0	0	0		ENST00000497842.6_1_17:15903346-15927855:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19	ENST00000497842.6_1_17:15903346-15927855:+|nuORF	ENST00000497842.6_1_17:15903346-15927855:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.8143310546875	2	638.830234	1275.64592	0.70667	0.00045144	-0.82536	-0.00052726	-0.11869	-7.5824E-05	638.8296448224627	54.097	0.41708	54.081	53.865	54.282	-0.015923					24	14	2	0	0	0	0.048078	1	12819	12819		53.798	37.649	1	297530			11574	439	6571	6571	14762	14762					0.019118633552579922
GQLGKPLAK	9	Unmodified	_GQLGKPLAK_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2873229980469	2	456.287277	910.560001	0.058531	2.6707E-05	-1.9002	-0.00086703	-1.8416	-0.00084032	456.28713336990825	16.818	0.84965	16.818	16.574	17.424	0					53	29	3	0	0	0	0.063853	2	1440	1440;1490		47.749	28.492	1	262150			11575	3536	6572	6572	14763;14764	14763					0.10114368031076992
GQLGKPLAK	9	Unmodified	_GQLGKPLAK_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2871398925781	2	456.287277	910.560001	-0.045977	-2.0979E-05	-0.95274	-0.00043472	-0.99871	-0.0004557	456.2871552124179	16.975	0.73067	16.859	16.502	17.233	-0.11585					64	26	4	0	0	0	0.088443	2	1473	1473;1523		39.95	21.815	1	219420			11576	3536	6572	6572	14765;14766	14765					0.10114368031076992
GQLGKPLAK	9	Unmodified	_GQLGKPLAK_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2872314453125	2	456.287277	910.560001	0.20194	9.2144E-05	-1.5028	-0.00068571	-1.3009	-0.00059357	456.2871081319108	16.874	0.854	16.812	16.558	17.412	-0.062534					60	30	3	0	0	0	0.11461	2	1498	1451;1498		36.127	21.87	1	242460			11577	3536	6572	6572	14767;14768	14768					0.10114368031076992
GQLRELLFHV	10	Unmodified	_GQLRELLFHV_					0	0	0			REV__ENSG00000135966|ENST00000393359|TGFBRAP1	REV__ENSG00000135966|ENST00000393359|TGFBRAP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3709716796875	2	606.348397	1210.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.13	1	111.11	110.61	111.61	-0.013939								0	0	0	0.37807	1	28936	28936		2.9952	0.26005	1		+		11578	15774	6573	6573	14769	14769					0.08532785042643809
GQLSVHTPK	9	Unmodified	_GQLSVHTPK_					0	0	0		nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2421569824219	2	483.771991	965.529429	0.28353	0.00013716	-2.779	-0.0013444	-2.4954	-0.0012072	483.7720558352752	20.579	1.8267	20.579	20.113	21.94	0					141	65	3	0	0	0	0.14306	1	2529	2529		45.74	16.658	1	163570			11579	2590	6574	6574	14770	14770					0.045285896460427466
GQLSVHTPK	9	Unmodified	_GQLSVHTPK_					0	0	0		nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2421875	2	483.771991	965.529429	0.49492	0.00023943	-1.0537	-0.00050974	-0.55876	-0.00027031	483.77203497955054	20.701	0.78991	20.591	20.104	20.894	-0.11003					35	28	2	0	0	0	0.14306	1	2587	2587		45.74	12.954	1	197850			11580	2590	6574	6574	14771	14771					0.045285896460427466
GQMRRMDPVLS	11	Unmodified	_GQMRRMDPVLS_					0	0	0		ENSG00000104856|ENST00000221452|RELB	ENSG00000104856|ENST00000221452|RELB	ENSG00000104856|ENST00000221452|RELB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	645.3268432617188	2	645.326282	1288.63801	0.47158	0.00030432	0.31723	0.00020472	0.78881	0.00050904	645.3264322961959	53.291	1.0601	53.281	52.976	54.036	-0.0096054					113	39	4	0	0	0	0.44192	1	12578	12578		5.7319	5.7319	1	7521700			11581	1925	6575	6575	14772	14772					0.0052368956251029886
GQNPTNAEVLK	11	Unmodified	_GQNPTNAEVLK_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000549178.5_1_12:56548807-56551507:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000550152.5_1_12:56547702-56549709:+|nuORF;ENSG00000196465|ENST00000695999|MYL6B;ENST00000405661.8_1_12:56547702-56549525:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8092651367188	2	585.809302	1169.60405	0.00069916	4.0957E-07	0.16965	9.9382E-05	0.17035	9.9792E-05	585.8094284714548	27.909	1.0168	27.909	27.561	28.578	0					114	35	5	0	0	0	2.6757000000000003E-19	4	4785	4735;4785;4835;4882		202.34	146.84	1	5058200			11582	1427	6576	6576	14773;14774;14775;14776	14774					0.0260330766673178
GQNPTNAEVLK	11	Unmodified	_GQNPTNAEVLK_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000549178.5_1_12:56548807-56551507:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000550152.5_1_12:56547702-56549709:+|nuORF;ENSG00000196465|ENST00000695999|MYL6B;ENST00000405661.8_1_12:56547702-56549525:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8093872070312	2	585.809302	1169.60405	-0.079174	-4.6381E-05	0.25843	0.00015139	0.17926	0.00010501	585.809493828638	27.873	1.2419	27.869	27.51	28.752	-0.0043831					131	43	5	0	0	0	2.243E-25	4	4783	4736;4783;4827;4874		211.53	167.76	1	5426000			11583	1427	6576	6576	14777;14778;14779;14780	14778					0.0260330766673178
GQNPTNAEVLK	11	Unmodified	_GQNPTNAEVLK_					0	0	0		ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000549178.5_1_12:56548807-56551507:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000550152.5_1_12:56547702-56549709:+|nuORF;ENSG00000196465|ENST00000695999|MYL6B;ENST00000405661.8_1_12:56547702-56549525:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	ENST00000548725.5_1_12:56552185-56553955:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8095092773438	2	585.809302	1169.60405	-0.06775	-3.9689E-05	0.27901	0.00016344	0.21126	0.00012376	585.8094940902528	27.831	1.2648	27.831	27.511	28.776	0.0004673					121	44	6	0	0	0	2.243E-25	4	4774	4731;4774;4818;4863		211.53	167.76	1	5240300			11584	1427	6576	6576	14781;14782;14783;14784	14782					0.0260330766673178
GQNVASYSSLF	11	Unmodified	_GQNVASYSSLF_					0	0	0			REV__ENST00000476917.5_1_10:126095965-126100767:-|nuORF	REV__ENST00000476917.5_1_10:126095965-126100767:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.2651977539062	2	586.782753	1171.55095	-0.066882	-3.9245E-05	0.67067	0.00039354	0.60379	0.00035429	586.7832810481914	27.922	0.56135	27.922	27.626	28.188	0.0004673					35	19	3	0	0	0	0.32996	1	4714	4714		8.1555	1.4324	1	183050	+		11585	13658	6577	6577	14785	14785					-0.027960701159145174
GQNVASYSSLF	11	Unmodified	_GQNVASYSSLF_					0	0	0			REV__ENST00000476917.5_1_10:126095965-126100767:-|nuORF	REV__ENST00000476917.5_1_10:126095965-126100767:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	586.782753	1171.55095	-0.009396	-5.5134E-06	0.27303	0.00016021	0.26363	0.00015469	586.7831756486443	27.937	0.44395	27.937	27.763	28.207	0	0.00046816	-0.00027981	NaN	8.1555	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185910	+		11586	13658	6577	6577							-0.027960701159145174
GQNVASYSSLF	11	Unmodified	_GQNVASYSSLF_					0	0	0			REV__ENST00000476917.5_1_10:126095965-126100767:-|nuORF	REV__ENST00000476917.5_1_10:126095965-126100767:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	586.782753	1171.55095	-0.056158	-3.2952E-05	0.59161	0.00034714	0.53545	0.00031419	586.7832383375869	27.956	0.48223	27.951	27.684	28.167	-0.0042572	0.014315	9.4068E-05	NaN	8.1555	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200700	+		11587	13658	6577	6577							-0.027960701159145174
GQPEIFYTF	9	Unmodified	_GQPEIFYTF_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.266357421875	2	551.266207	1100.51786	0.47285	0.00026067	-0.099396	-5.4794E-05	0.37346	0.00020587	551.2661202659351	76.853	1.074	76.853	76.53	77.604	0					115	39	4	0	0	0	0.0016712	2	19806	19806;19854		114.2	47.745	1	2972700			11588	5853	6578	6578	14786;14787	14786					-0.02837652167977467
GQPEIFYTF	9	Unmodified	_GQPEIFYTF_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2664794921875	2	551.266207	1100.51786	0.38146	0.00021029	-0.00068269	-3.7635E-07	0.38078	0.00020991	551.2661562426824	76.808	1.2495	76.861	76.371	77.621	0.053421					116	44	4	0	0	0	0.0041491	4	19785	19737;19785;19830;19886		93.166	43.612	1	2558300			11589	5853	6578	6578	14788;14789;14790;14791	14789					-0.02837652167977467
GQPEIFYTF	9	Unmodified	_GQPEIFYTF_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.2664184570312	2	551.266207	1100.51786	0.63952	0.00035255	-0.17192	-9.4773E-05	0.4676	0.00025777	551.2660587364843	76.916	1.2289	76.884	76.37	77.599	-0.031334					123	44	4	0	0	0	0.0028542	4	19806	19756;19806;19853;19907		103.42	45.697	1	3083500			11590	5853	6578	6578	14792;14793;14794;14795	14793					-0.02837652167977467
GQPLALPGRVL	11	Unmodified	_GQPLALPGRVL_					0	0	0		ENSG00000166289|ENST00000436066|PLEKHF1	ENSG00000166289|ENST00000436066|PLEKHF1	ENSG00000166289|ENST00000436066|PLEKHF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3640747070312	2	560.84549	1119.67643	0.55106	0.00030906	-0.17148	-9.6174E-05	0.37958	0.00021289	560.8453061977973	40.391	0.67836	40.483	40.2	40.879	0.09267					51	24	3	0	0	0	0.33119	1	8723	8723		5.7319	0	1	1109400			11591	6057	6579	6579	14796	14796					0.12137686530991232
GQQLLPKLISS	11	Unmodified	_GQQLLPKLISS_					0	0	0			REV__ENSG00000196455|ENST00000356763|PIK3R4	REV__ENSG00000196455|ENST00000356763|PIK3R4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8294067382812	2	592.355888	1182.69722	0.28804	0.00017062	0.32259	0.00019109	0.61063	0.00036171	592.3560148828155	59.479	0.12857	59.479	59.38	59.508	0					5	3	2	0	0	0	0.32736	1	14486	14486		12.241	3.4953	1	83234	+		11592	18654	6580	6580	14797	14797					0.11318232119992899
GQQQGVFKK	9	Unmodified	_GQQQGVFKK_					0	0	0		nc|ENSG00000170921|Q9HCD6-4|TANC2;nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;ENST00000581143.1_1_17:61466073-61473304:+|nuORF	nc|ENSG00000170921|Q9HCD6-4|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2855224609375	2	510.285266	1018.55598	0.012632	6.4461E-06	0.9792	0.00049967	0.99184	0.00050612	510.2858874778453	14.485	0.70707	14.485	14.138	14.845	0					47	24	3	0	0	0	0.017391	1	738	738		68.081	13.307	1	221590			11593	6497	6581	6581	14798	14798					0.047442785373846164
GQQQGVFKK	9	Unmodified	_GQQQGVFKK_					0	0	0		nc|ENSG00000170921|Q9HCD6-4|TANC2;nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;ENST00000581143.1_1_17:61466073-61473304:+|nuORF	nc|ENSG00000170921|Q9HCD6-4|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.28533935546875	2	510.285266	1018.55598	-0.013352	-6.8132E-06	1.0195	0.00052022	1.0061	0.00051341	510.285833901026	14.614	0.74779	14.509	14.105	14.853	-0.10466					51	25	3	0	0	0	0.0033114	1	782	782		99.799	38.441	1	247950			11594	6497	6581	6581	14799	14799					0.047442785373846164
GQQQGVFKK	9	Unmodified	_GQQQGVFKK_					0	0	0		nc|ENSG00000170921|Q9HCD6-4|TANC2;nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;ENST00000581143.1_1_17:61466073-61473304:+|nuORF	nc|ENSG00000170921|Q9HCD6-4|TANC2	nc|ENSG00000170921|Q9HCD6-4|TANC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.285400390625	2	510.285266	1018.55598	-0.069534	-3.5482E-05	1.2627	0.00064436	1.1932	0.00060888	510.285880668589	14.569	0.80029	14.503	14.124	14.924	-0.066068					65	28	4	0	0	0	0.0042343	1	780	780		92.491	46.47	1	180310			11595	6497	6581	6581	14800	14800					0.047442785373846164
GQRAGALVSL	10	Unmodified	_GQRAGALVSL_					0	0	0			REV__ENSG00000006638|ENST00000375190|TBXA2R	REV__ENSG00000006638|ENST00000375190|TBXA2R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.2788391113281	2	486.285266	970.555979	0.085726	4.1687E-05	0.23442	0.000114	0.32015	0.00015568	486.28545846323107	34.171	0.83878	34.238	33.879	34.718	0.0667					98	29	4	0	0	0	0.30958	1	6640	6640		19.257	2.1441	1	11342000	+		11596	13368	6582	6582	14801	14801					0.0695227853735787
GQRLQGPHC	9	Unmodified	_GQRLQGPHC_					0	0	0			REV__ENST00000533186.5_3_16:2012255-2012544:-|nuORF	REV__ENST00000533186.5_3_16:2012255-2012544:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.80145263671875	2	498.245618	994.476682	0.35672	0.00017773	2.1354	0.0010639	2.4921	0.0012417	498.2465277186764	24.49	1.051	24.418	23.821	24.872	-0.072559					49	35	2	0	0	0	0.22596	1	3655	3655		6.7232	0	1	49014	+		11597	22042	6583	6583	14802	14802					-0.020776916884187813
GQRQKRGLF	9	Unmodified	_GQRQKRGLF_					0	0	0			REV__ENST00000485832.1_1_7:128446807-128447827:+|nuORF	REV__ENST00000485832.1_1_7:128446807-128447827:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3167724609375	2	545.317432	1088.62031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.46	1	115.44	114.94	115.94	-0.020988								0	0	0	0.25499	1	29944	29944		4.756	0	1		+		11598	21547	6584	6584	14803	14803					0.07954478414171717
GQRTLHSY	8	Unmodified	_GQRTLHSY_					0	0	0			REV__ENST00000470432.5_1_1:150483317-150483689:+|nuORF	REV__ENST00000470432.5_1_1:150483317-150483689:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.24713134765625	2	481.246141	960.477728	-0.20865	-0.00010041	-0.15278	-7.3525E-05	-0.36143	-0.00017394	481.2461707059327	104.18	0.68884	104.18	103.87	104.56	0					166	91	3	0	0	0	0.43302	4	27636	27636;27678;27699;27714		11.64	3.047	1	591280	+		11599	16167	6585	6585	14804;14805;14806;14807	14804					-0.004091540478725619
GQRTLHSY	8	Unmodified	_GQRTLHSY_					0	0	0			REV__ENST00000470432.5_1_1:150483317-150483689:+|nuORF	REV__ENST00000470432.5_1_1:150483317-150483689:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.246826171875	2	481.246141	960.477728	0.02612	1.257E-05	0.24049	0.00011573	0.26661	0.0001283	481.2461751180837	104.02	0.62807	104.03	103.91	104.53	0.0082626					145	86	2	0	0	0	0.43302	2	27709	27709;27724		11.64	3.047	1	772420	+		11600	16167	6585	6585	14808;14809	14808					-0.004091540478725619
GQRTLHSY	8	Unmodified	_GQRTLHSY_					0	0	0			REV__ENST00000470432.5_1_1:150483317-150483689:+|nuORF	REV__ENST00000470432.5_1_1:150483317-150483689:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.24664306640625	2	481.246141	960.477728	0.21642	0.00010415	-0.048653	-2.3414E-05	0.16777	8.0736E-05	481.2461564228445	104.22	0.66076	104.22	103.93	104.59	0.0011444					194	87	3	0	0	0	0.43302	1	27716	27716		11.64	3.047	1	899990	+		11601	16167	6585	6585	14810	14810					-0.004091540478725619
GQRVGLFPP	9	Unmodified	_GQRVGLFPP_					0	0	0		ENSG00000099822|ENST00000251287|HCN2	ENSG00000099822|ENST00000251287|HCN2	ENSG00000099822|ENST00000251287|HCN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.76373291015625	2	485.777077	969.5396	0.38406	0.00018657	0.13345	6.4825E-05	0.51751	0.00025139	485.77764214379744	23.804	0.16842	23.766	23.651	23.82	-0.038927					6	5	2	0	0	0	0.26117	1	3539	3539		2.3027	0	1	13201			11602	1498	6586	6586	14811	14811					0.053611973712804684
GQSDIAITK	9	Unmodified	_GQSDIAITK_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7558898925781	2	466.756007	931.497461	-0.06396	-2.9854E-05	-0.28084	-0.00013109	-0.3448	-0.00016094	466.75588768160264	24.285	0.64124	24.285	23.998	24.639	0					55	21	4	0	0	0	0.033439	1	3719	3719		59.052	16.74	1	355410			11603	1910	6587	6587	14812	14812					0.028971771722126505
GQSDIAITK	9	Unmodified	_GQSDIAITK_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.6184387207031	2	466.756007	931.497461	0.062404	2.9128E-05	-0.38244	-0.00017851	-0.32004	-0.00014938	466.75583978359396	24.401	0.5891	24.329	24.085	24.674	-0.072559					53	19	4	0	0	0	0.20381	1	3799	3799		29.841	4.4413	1	322190			11604	1910	6587	6587	14813	14813					0.028971771722126505
GQSDIAITK	9	Unmodified	_GQSDIAITK_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.6184997558594	2	466.756007	931.497461	0.08256	3.8535E-05	-0.43735	-0.00020414	-0.35479	-0.0001656	466.75575271912595	24.424	0.71672	24.385	24.108	24.825	-0.038927					53	24	3	0	0	0	0.24636	1	3791	3791		16.149	3.1066	1	374660			11605	1910	6587	6587	14814	14814					0.028971771722126505
GQSSYVASK	9	Unmodified	_GQSSYVASK_					0	0	0			REV__nc|ENSG00000163913|Q9HBG6-8|IFT122	REV__nc|ENSG00000163913|Q9HBG6-8|IFT122	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.7325134277344	2	463.732532	925.45051	-0.13468	-6.2456E-05	0.17638	8.1791E-05	0.041694	1.9335E-05	463.73253497425816	16.313	0.65691	16.313	16.063	16.72	0					72	22	4	0	0	0	0.048637	1	1291	1291		53.404	11.564	1	637710	+		11606	17103	6588	6588	14815	14815					-0.015196823789096925
GQSSYVASK	9	Unmodified	_GQSSYVASK_					0	0	0			REV__nc|ENSG00000163913|Q9HBG6-8|IFT122	REV__nc|ENSG00000163913|Q9HBG6-8|IFT122	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7325134277344	2	463.732532	925.45051	-0.17808	-8.2581E-05	0.22464	0.00010417	0.046562	2.1592E-05	463.7325637738904	16.459	0.70073	16.345	16.075	16.775	-0.11434					69	24	4	0	0	0	0.048637	1	1338	1338		53.404	11.564	1	658650	+		11607	17103	6588	6588	14816	14816					-0.015196823789096925
GQSSYVASK	9	Unmodified	_GQSSYVASK_					0	0	0			REV__nc|ENSG00000163913|Q9HBG6-8|IFT122	REV__nc|ENSG00000163913|Q9HBG6-8|IFT122	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7325134277344	2	463.732532	925.45051	0.11764	5.4554E-05	-0.092339	-4.2821E-05	0.025302	1.1733E-05	463.73240861296154	16.355	0.66533	16.293	16.038	16.703	-0.062534					67	22	4	0	0	0	0.026579	1	1290	1290		61.602	11.669	1	648200	+		11608	17103	6588	6588	14817	14817					-0.015196823789096925
GQSSYVASK	9	Unmodified	_GQSSYVASK_					0	0	0			REV__nc|ENSG00000163913|Q9HBG6-8|IFT122	REV__nc|ENSG00000163913|Q9HBG6-8|IFT122	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	463.732532	925.45051	-0.13468	-6.2456E-05	0.17638	8.1791E-05	0.041694	1.9335E-05	463.73253497425816	16.313	0.65691	16.313	16.063	16.72	0	-0.0041859	6.0491E-05	NaN	61.602	72	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	637710	+		11609	17103	6588	6588							-0.015196823789096925
GQSSYVASK	9	Unmodified	_GQSSYVASK_					0	0	0			REV__nc|ENSG00000163913|Q9HBG6-8|IFT122	REV__nc|ENSG00000163913|Q9HBG6-8|IFT122	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	463.732532	925.45051	-0.17808	-8.2581E-05	0.22464	0.00010417	0.046562	2.1592E-05	463.7325637738904	16.459	0.70073	16.345	16.075	16.775	-0.11434	0.028302	0.00010525	NaN	61.602	69	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	658650	+		11610	17103	6588	6588							-0.015196823789096925
GQSSYVASK	9	Unmodified	_GQSSYVASK_					0	0	0			REV__nc|ENSG00000163913|Q9HBG6-8|IFT122	REV__nc|ENSG00000163913|Q9HBG6-8|IFT122	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	463.732532	925.45051	0.11764	5.4554E-05	-0.092339	-4.2821E-05	0.025302	1.1733E-05	463.73240861296154	16.355	0.66533	16.293	16.038	16.703	-0.062534	-0.024116	-0.00018873	NaN	61.602	67	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	648200	+		11611	17103	6588	6588							-0.015196823789096925
GQTKVLTQK	9	Unmodified	_GQTKVLTQK_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2907409667969	2	501.800749	1001.58694	-0.04125	-2.0699E-05	0.5072	0.00025451	0.46595	0.00023381	501.8009912412919	13.833	0.32841	13.728	13.633	13.961	-0.10466					22	11	3	0	0	0	0.24429	1	561	561		18.373	1.2602	1	126280			11612	8673	6589	6589	14818	14818					0.08621431851611305
GQVNKPLLQ	9	Unmodified	_GQVNKPLLQ_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.8140563964844	2	498.795466	995.57638	0.6706	0.00033449	0.51302	0.00025589	1.1836	0.00059038	498.7959012647348	51.006	0.83342	51.006	50.623	51.456	0					55	30	3	0	0	0	0.2322	1	11835	11835		10.074	10.074	1	535570	+		11613	18563	6590	6590	14819	14819					0.07841449197189831
GQVNKPLLQ	9	Unmodified	_GQVNKPLLQ_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.8141174316406	2	498.795466	995.57638	0.54649	0.00027259	0.84267	0.00042032	1.3892	0.00069291	498.7959257483873	51.063	0.61776	51.073	50.835	51.452	0.0095634					33	23	2	0	0	0	0.2322	1	11844	11844		20.454	8.8133	1	455480	+		11614	18563	6590	6590	14820	14820					0.07841449197189831
GQVSPSPDKA	10	Unmodified	_GQVSPSPDKA_					0	0	0			REV__nc|ENSG00000132361|O75153|CLUH	REV__nc|ENSG00000132361|O75153|CLUH	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.25897216796875	2	493.251089	984.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.191	1	16.076	15.576	16.576	-0.11434								0	0	0	0.37157	1	1255	1255		5.7319	0	1		+		11615	15565	6591	6591	14821	14821					-0.005240108331463489
GQYGNPLNK	9	Unmodified	_GQYGNPLNK_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000560608.5_1_15:58971480-59041769:-|nuORF;ENST00000561149.1_1_15:58974496-59041769:-|nuORF;ENST00000558733.5_1_15:58947546-59041769:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10;ENST00000560608.5_1_15:58971480-59041769:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.75390625	2	495.753798	989.493044	0.091654	4.5438E-05	0.25884	0.00012832	0.3505	0.00017376	495.7538977823275	27.859	0.92959	27.859	27.38	28.31	0					69	31	3	0	0	0	3.5085E-07	2	4801	4754;4801		166.45	77.047	1	1974700			11616	4088;11880	6592	6592	14822;14823	14823					-0.0021228725066748666
GQYGNPLNK	9	Unmodified	_GQYGNPLNK_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000560608.5_1_15:58971480-59041769:-|nuORF;ENST00000561149.1_1_15:58974496-59041769:-|nuORF;ENST00000558733.5_1_15:58947546-59041769:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10;ENST00000560608.5_1_15:58971480-59041769:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.75390625	2	495.753798	989.493044	0.064841	3.2145E-05	0.35893	0.00017794	0.42377	0.00021008	495.7539311435139	27.859	1.157	27.848	27.331	28.488	-0.011301					75	40	3	0	0	0	7.827E-05	2	4801	4751;4801		144.35	84.704	1	1985700			11617	4088;11880	6592	6592	14824;14825	14825					-0.0021228725066748666
GQYGNPLNK	9	Unmodified	_GQYGNPLNK_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000560608.5_1_15:58971480-59041769:-|nuORF;ENST00000561149.1_1_15:58974496-59041769:-|nuORF;ENST00000558733.5_1_15:58947546-59041769:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10;ENST00000560608.5_1_15:58971480-59041769:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7539367675781	2	495.753798	989.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.706	1	27.694	27.194	28.194	-0.01156								0	0	0	0.00022071	1	4735	4735		111.29	56.513	1				11618	4088;11880	6592	6592	14826	14826					-0.0021228725066748666
GQYGNPLNK	9	Unmodified	_GQYGNPLNK_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000560608.5_1_15:58971480-59041769:-|nuORF;ENST00000561149.1_1_15:58974496-59041769:-|nuORF;ENST00000558733.5_1_15:58947546-59041769:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10;ENST00000560608.5_1_15:58971480-59041769:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7539367675781	2	495.753798	989.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.873	1	27.873	27.373	28.373	0.0004673								0	0	0	1.0523E-06	1	4786	4786		131.27	66.033	1				11619	4088;11880	6592	6592	14827	14827					-0.0021228725066748666
GQYTLVQQLF	10	Unmodified	_GQYTLVQQLF_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.8184814453125	2	598.819138	1195.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.613	1	57.613	57.113	58.113	0								0	0	0	0.24161	1	13914	13914		34.932	3.6637	1		+		11620	18498	6593	6593	14828	14828					0.033736836775233314
GRDQQQNEII	10	Unmodified	_GRDQQQNEII_					0	0	0		nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;nc|ENSG00000165525|O60524-5|NEMF	nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-4|NEMF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.81201171875	2	600.802008	1199.58946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.009	1	79.067	78.567	79.567	0.058151								0	0	0	0.24599	1	20457	20457		34.402	3.1334	1				11621	5972	6594	6594	14829	14829					-0.0023476448138808337
GREKLAVLV	9	Unmodified	_GREKLAVLV_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.81378173828125	2	492.813659	983.612765	0.43031	0.00021206	0.24697	0.00012171	0.67727	0.00033377	492.8136405670959	55.222	0.78119	55.222	55.039	55.82	0					67	28	3	0	0	0	0.20626	1	13157	13157		22.736	0	1	2046100	+		11622	18939	6595	6595	14830	14830					0.12030326093895383
GREKLAVLV	9	Unmodified	_GREKLAVLV_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	492.813659	983.612765	0.43031	0.00021206	0.24697	0.00012171	0.67727	0.00033377	492.8136405670959	55.222	0.78119	55.222	55.039	55.82	0	-0.028511	-3.9587E-05	NaN	22.736	67	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2046100	+		11623	18939	6595	6595							0.12030326093895383
GRERRRPLSF	10	Unmodified	_GRERRRPLSF_					0	0	0		ENST00000372903.6_1_6:42531844-42531958:+|nuORF	ENST00000372903.6_1_6:42531844-42531958:+|nuORF	ENST00000372903.6_1_6:42531844-42531958:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.838134765625	2	637.365444	1272.71634	0.54039	0.00034443	0.072842	4.6427E-05	0.61323	0.00039085	637.3654033598807	101.68	0.10367	101.67	101.58	101.68	-0.0054703					16	12	2	0	0	0	0.41085	1	27132	27132		1.4819	0	1	83107			11624	9854	6596	6596	14831	14831					0.09088626254265364
GRFLWVSAHSL	11	Unmodified	_GRFLWVSAHSL_					0	0	0			REV__nc|ENSG00000288702|P35503-3|UGT1A3	REV__nc|ENSG00000288702|P35503-3|UGT1A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8934020996094	3	424.899773	1271.67749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.39	1	19.39	18.89	19.89	0								0	0	0	0.35034	1	2220	2220		4.1166	0	1		+		11625	23246	6597	6597	14832	14832					0.052519008998842764
GRGAPRTK	8	Unmodified	_GRGAPRTK_					0	0	0		nc|ENSG00000196867|Q8NHY6-2|ZFP28;ENSG00000196867|ENST00000301318|ZFP28	nc|ENSG00000196867|Q8NHY6-2|ZFP28	nc|ENSG00000196867|Q8NHY6-2|ZFP28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7512512207031	2	421.751393	841.488233	-0.011083	-4.6743E-06	0.062758	2.6468E-05	0.051674	2.1794E-05	421.751316250971	68.105	2.9382	68.088	66.631	69.569	-0.016716					195	104	2	0	0	0	0.45431	1	17039	17039		4.3292	1.7518	1	488640			11626	7908	6598	6598	14833	14833					0.061148733972345326
GRGRSHGRRL	10	Unmodified	_GRGRSHGRRL_					0	0	0			REV__ENST00000261797.6_1_5:149887692-149900432:+|nuORF	REV__ENST00000261797.6_1_5:149887692-149900432:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3541259765625	2	576.334479	1150.6544	0.39801	0.00022939	-1.5855	-0.00091377	-1.1875	-0.00068438	576.3337179624499	38.375	0.38383	38.466	38.237	38.62	0.090881					20	13	2	0	0	0	0.34795	1	8035	8035		13.042	2.9685	1	162300	+		11627	19602	6599	6599	14834	14834					0.08510319625793272
GRGRSHGRRL	10	Unmodified	_GRGRSHGRRL_					0	0	0			REV__ENST00000261797.6_1_5:149887692-149900432:+|nuORF	REV__ENST00000261797.6_1_5:149887692-149900432:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3540649414062	2	576.334479	1150.6544	0.26849	0.00015474	-0.72121	-0.00041566	-0.45272	-0.00026092	576.3340202930528	38.305	0.27373	38.403	38.294	38.568	0.097527					18	9	3	0	0	0	0.3258	1	8006	8006		17.113	6.289	1	137090	+		11628	19602	6599	6599	14835	14835					0.08510319625793272
GRGVIQRPAR	10	Unmodified	_GRGVIQRPAR_					0	0	0		ENST00000308664.10_1_12:110719337-110719667:+|nuORF	ENST00000308664.10_1_12:110719337-110719667:+|nuORF	ENST00000308664.10_1_12:110719337-110719667:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3540649414062	2	555.336156	1108.65776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.02	1	112	111.5	112.5	-0.015625								0	0	0	0.37664	1	29141	29141		3.5965	0.60125	1				11629	9295	6600	6600	14836	14836					0.10777569679794397
GRGWVRGEWE	10	Unmodified	_GRGWVRGEWE_					0	0	0			REV__ENST00000562965.1_1_15:74212002-74212287:-|nuORF	REV__ENST00000562965.1_1_15:74212002-74212287:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.8840637207031	3	411.203744	1230.5894	-0.27799	-0.00011431	1.3812	0.00056794	1.1032	0.00045363	411.20436935599326	15.661	0.4788	15.661	15.413	15.892	0					36	16	3	0	0	0	0.32095	1	1074	1074		3.0723	0.57378	1	25364	+		11630	22323	6601	6601	14837	14837					-0.016667196907292237
GRHVVSVW	8	Unmodified	_GRHVVSVW_					0	0	0		ENSG00000130812|ENST00000253109|ANGPTL6	ENSG00000130812|ENST00000253109|ANGPTL6	ENSG00000130812|ENST00000253109|ANGPTL6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.787841796875	2	470.261594	938.508634	0.13784	6.4819E-05	-1.7095	-0.00080393	-1.5717	-0.00073911	470.2605540426756	17.65	0.39985	17.59	17.444	17.844	-0.060429					18	13	2	0	0	0	0.34167	1	1682	1682		11.64	0.81637	1	25033			11631	3519	6602	6602	14838	14838					0.03692044057038402
GRILLLTAS	9	Unmodified	_GRILLLTAS_					0	0	0		ENST00000266529.7_1_12:42707499-42707550:-|nuORF	ENST00000266529.7_1_12:42707499-42707550:-|nuORF	ENST00000266529.7_1_12:42707499-42707550:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.8211669921875	2	472.300384	942.586216	0.20511	9.6874E-05	-0.46085	-0.00021766	-0.25574	-0.00012079	472.29987968929004	24.457	0.34812	24.384	24.179	24.527	-0.072559					17	11	2	0	0	0	0.25622	1	3797	3797		7.2892	0	1	35281			11632	9058	6603	6603	14839	14839					0.11262637202548831
GRISEPGGRRA	11	Unmodified	_GRISEPGGRRA_					0	0	0		ENST00000480169.1_1_1:40204667-40204940:+|nuORF	ENST00000480169.1_1_1:40204667-40204940:+|nuORF	ENST00000480169.1_1_1:40204667-40204940:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3211669921875	2	578.320703	1154.62685	0.38905	0.00022499	0.414	0.00023942	0.80304	0.00046442	578.320734328455	82.219	2.6522	82.219	81.302	83.954	0					240	103	3	0	0	0	0.41288	1	21300	21300		9.544	2.4423	1	835630			11633	11002	6604	6604	14840	14840					0.05572371574908175
GRKKERPQ	8	Unmodified	_GRKKERPQ_					0	0	0			REV__ENST00000512361.1_1_4:113574271-113575339:+|nuORF	REV__ENST00000512361.1_1_4:113574271-113575339:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2860412597656	2	499.796332	997.578111	0.059596	2.9786E-05	-0.65563	-0.00032768	-0.59603	-0.0002979	499.79593725615337	12.664	0.43389	12.565	12.46	12.894	-0.099291					32	14	4	0	0	0	0.34414	1	179	179		2.0598	0.21551	1	309490	+		11634	17850	6605	6605	14841	14841					0.07922503005795534
GRKTKHRL	8	Unmodified	_GRKTKHRL_					0	0	0			REV__nc|ENSG00000293056|Q6NVV1|RPL13AP3	REV__nc|ENSG00000293056|Q6NVV1|RPL13AP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3145446777344	2	498.314692	994.614831	0.19005	9.4702E-05	-0.051733	-2.5779E-05	0.13831	6.8923E-05	498.31467754172087	18.389	0.54386	18.272	17.957	18.501	-0.11739					28	18	2	0	0	0	0.45307	1	1927	1927		4.756	0	1	68512	+		11635	23259	6606	6606	14842	14842					0.11730799622353061
GRKTKHRL	8	Unmodified	_GRKTKHRL_					0	0	0			REV__nc|ENSG00000293056|Q6NVV1|RPL13AP3	REV__nc|ENSG00000293056|Q6NVV1|RPL13AP3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	498.314692	994.614831	0.19005	9.4702E-05	-0.051733	-2.5779E-05	0.13831	6.8923E-05	498.31467754172087	18.389	0.54386	18.272	17.957	18.501	-0.11739	0.023892	-4.2463E-05	NaN	4.756	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68512	+		11636	23259	6606	6606							0.11730799622353061
GRLAQVCRW	9	Unmodified	_GRLAQVCRW_					0	0	0		nc|ENSG00000107829|P57775|FBXW4;ENSG00000107829|ENST00000331272|FBXW4	nc|ENSG00000107829|P57775|FBXW4	nc|ENSG00000107829|P57775|FBXW4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7921752929688	2	544.792735	1087.57092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.88	1	118.9	118.4	119.4	0.026253								0	0	0	0.25631	1	30769	30769		4.3292	0.73274	1				11637	2151	6607	6607	14843	14843					0.030634471337180003
GRLARKWRRG	10	Unmodified	_GRLARKWRRG_					0	0	0			REV__ENST00000546023.1_1_6:160210088-160210586:-|nuORF	REV__ENST00000546023.1_1_6:160210088-160210586:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.29388427734375	3	419.258406	1254.75339	0.11839	4.9637E-05	4.3019	0.0018036	4.4203	0.0018533	419.2602694311593	91.563	0.22778	91.653	91.508	91.736	0.090668					24	17	2	0	0	0	0.32054	1	24313	24313		1.5923	0.13716	1	217280	+		11638	22165	6608	6608	14844	14844					0.13620342590661494
GRLELSLTL	9	Unmodified	_GRLELSLTL_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2911071777344	2	501.303124	1000.5917	0.38087	0.00019093	0.23141	0.00011601	0.61228	0.00030694	501.30315699528825	75.393	0.62503	75.445	75.076	75.701	0.052368					33	22	2	0	0	0	0.12642	1	19321	19321		34.402	1.616	1	190270			11639	845	6609	6609	14845	14845					0.09142315994370165
GRLELSLTL	9	Unmodified	_GRLELSLTL_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2908935546875	2	501.303124	1000.5917	0.58675	0.00029414	-0.056174	-2.816E-05	0.53058	0.00026598	501.3031827760254	79.377	1.0109	79.348	78.716	79.727	-0.028931					58	41	2	0	0	0	0.25112	2	20439	20439;20591		16.149	2.2431	1	119550			11640	845	6609	6609	14846;14847	14846					0.09142315994370165
GRLELSLTL	9	Unmodified	_GRLELSLTL_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	501.303124	1000.5917	0.22669	0.00011364	0.3304	0.00016563	0.55709	0.00027927	501.3033098767579	75.475	0.56126	75.475	75.178	75.739	0	0.014713	4.3865E-05	NaN	34.402	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169280			11641	845	6609	6609							0.09142315994370165
GRLELSLTL	9	Unmodified	_GRLELSLTL_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	501.303124	1000.5917	0.38087	0.00019093	0.23141	0.00011601	0.61228	0.00030694	501.30315699528825	75.393	0.62503	75.445	75.076	75.701	0.052368	-0.014713	-5.5385E-05	NaN	34.402	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190270			11642	845	6609	6609							0.09142315994370165
GRLKREREHL	10	Unmodified	_GRLKREREHL_					0	0	0		ENST00000557844.1_2_15:82554384-82554618:-|nuORF	ENST00000557844.1_2_15:82554384-82554618:-|nuORF	ENST00000557844.1_2_15:82554384-82554618:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.24566650390625	3	431.92146	1292.74255	0.2574	0.00011118	-0.51066	-0.00022056	-0.25326	-0.00010939	431.92124042681536	20.91	1.0023	20.8	20.296	21.298	-0.11003					72	34	3	0	0	0	0.32143	1	2546	2546		0.56317	0	1	349820			11643	11868	6610	6610	14848	14848					0.10788895425753253
GRLKREREHL	10	Unmodified	_GRLKREREHL_					0	0	0		ENST00000557844.1_2_15:82554384-82554618:-|nuORF	ENST00000557844.1_2_15:82554384-82554618:-|nuORF	ENST00000557844.1_2_15:82554384-82554618:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	431.92146	1292.74255	0.0052816	2.2812E-06	-0.37195	-0.00016065	-0.36667	-0.00015837	431.92134951925004	20.632	0.84525	20.632	20.235	21.08	0	-0.084055	9.9103E-05	NaN	1.5923	84	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276980			11644	11868	6610	6610							0.10788895425753253
GRLKREREHL	10	Unmodified	_GRLKREREHL_					0	0	0		ENST00000557844.1_2_15:82554384-82554618:-|nuORF	ENST00000557844.1_2_15:82554384-82554618:-|nuORF	ENST00000557844.1_2_15:82554384-82554618:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	431.92146	1292.74255	0.16787	7.2508E-05	-0.41721	-0.0001802	-0.24933	-0.00010769	431.9213244017963	20.769	0.81569	20.716	20.302	21.118	-0.05291	4.4598E-05	4.0459E-05	NaN	1.5923	80	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373490			11645	11868	6610	6610							0.10788895425753253
GRLPDRVRL	9	Unmodified	_GRLPDRVRL_					0	0	0			REV__ENST00000490521.1_1_10:76994304-76995073:-|nuORF	REV__ENST00000490521.1_1_10:76994304-76995073:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.3334350585938	2	541.333082	1080.65161	0.39333	0.00021292	0.027634	1.4959E-05	0.42097	0.00022788	541.3332974419648	17.957	0.46646	17.896	17.618	18.084	-0.060429					26	16	2	0	0	0	0.33508	1	1771	1771		3.5965	0	1	63796	+		11646	21602	6611	6611	14849	14849					0.11451051448261751
GRLRGRTLPIS	11	Unmodified	_GRLRGRTLPIS_					0	0	0		ENST00000599244.5_2_19:35225134-35230060:+|nuORF	ENST00000599244.5_2_19:35225134-35230060:+|nuORF	ENST00000599244.5_2_19:35225134-35230060:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.3637084960938	2	613.37802	1224.74149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.474	1	89.474	88.974	89.974	0								0	0	0	0.32811	1	23679	23679		13.042	0	1				11647	12239	6612	6612	14850	14850					0.1381068105686154
GRLRGRTLPIS	11	Unmodified	_GRLRGRTLPIS_					0	0	0		ENST00000599244.5_2_19:35225134-35230060:+|nuORF	ENST00000599244.5_2_19:35225134-35230060:+|nuORF	ENST00000599244.5_2_19:35225134-35230060:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.3635864257812	2	613.37802	1224.74149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.507	1	89.507	89.007	90.007	0								0	0	0	0.34766	1	23689	23689		8.7454	0	1				11648	12239	6612	6612	14851	14851					0.1381068105686154
GRLRGRTLPIS	11	Unmodified	_GRLRGRTLPIS_					0	0	0		ENST00000599244.5_2_19:35225134-35230060:+|nuORF	ENST00000599244.5_2_19:35225134-35230060:+|nuORF	ENST00000599244.5_2_19:35225134-35230060:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.3638305664062	2	613.37802	1224.74149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.605	1	89.605	89.105	90.105	0								0	0	0	0.34766	1	23719	23719		8.7454	0	1				11649	12239	6612	6612	14852	14852					0.1381068105686154
GRPRKNVI	8	Unmodified	_GRPRKNVI_					0	0	0		nc|ENSG00000172987|Q8WWQ2-4|HPSE2;nc|ENSG00000172987|Q8WWQ2-3|HPSE2;nc|ENSG00000172987|Q8WWQ2-2|HPSE2;ENSG00000172987|ENST00000370552|HPSE2	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.29571533203125	2	470.295968	938.577383	-0.16107	-7.5753E-05	-0.35418	-0.00016657	-0.51526	-0.00024232	470.2963116647136	13.521	0.75978	13.454	13.275	14.035	-0.067495					80	26	5	0	0	0	0.41097	1	525	525		18.135	2.2878	1	5545400			11650	6683	6613	6613	14853	14853					0.10563708356744428
GRPWRNEEI	9	Unmodified	_GRPWRNEEI_					0	0	0			REV__ENST00000485575.1_1_1:156120026-156126208:+|nuORF	REV__ENST00000485575.1_1_1:156120026-156126208:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.783447265625	2	578.796529	1155.5785	0.29639	0.00017155	-0.80643	-0.00046676	-0.51005	-0.00029521	578.7959073667957	28.911	0.48152	28.907	28.72	29.202	-0.0042572					32	16	3	0	0	0	0.25314	1	5088	5088		15.847	0	1	343000	+		11651	21544	6614	6614	14854	14854					0.006938779349866309
GRQMRRLT	8	Unmodified	_GRQMRRLT_					0	0	0		ENST00000506025.1_2_5:176922079-176930550:+|nuORF	ENST00000506025.1_2_5:176922079-176930550:+|nuORF	ENST00000506025.1_2_5:176922079-176930550:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8108825683594	2	509.290359	1016.56617	0.26299	0.00013394	-0.20475	-0.00010428	0.058241	2.9661E-05	509.2905313476875	59.067	0.76067	59.067	58.8	59.56	0					45	26	2	0	0	0	0.33993	1	14336	14336		7.2892	0	1	220700			11652	11321	6615	6615	14855	14855					0.05854562990953127
GRREPLHKL	9	Unmodified	_GRREPLHKL_					0	0	0			REV__ENST00000523377.1_1_6:90345603-90345654:-|nuORF	REV__ENST00000523377.1_1_6:90345603-90345654:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3328247070312	2	553.333082	1104.65161	0.42498	0.00023516	-2.4479	-0.0013545	-2.0229	-0.0011193	553.3324526209802	86.571	2.1329	86.656	86.209	88.342	0.084251					198	99	4	0	0	0	0.30064	2	22857	22811;22857		8.7454	2.2614	1	1127700	+		11653	21930	6616	6616	14856;14857	14857					0.10347051448275124
GRRGLRAPPL	10	Unmodified	_GRRGLRAPPL_					0	0	0		ENSG00000178685|ENST00000313028|PARP10;ENST00000526007.5_1_8:145051654-145057989:-|nuORF	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.83984375	2	546.841074	1091.66759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.04	1	112.06	111.56	112.56	0.0131								0	0	0	0.37044	1	29169	29169		6.2058	2.6093	1				11654	7068	6617	6617	14858	14858					0.12542757685150718
GRRITVQTSSR	11	Unmodified	_GRRITVQTSSR_					0	0	0		ENST00000475773.5_1_1:29520676-29529710:-|nuORF	ENST00000475773.5_1_1:29520676-29529710:-|nuORF	ENST00000475773.5_1_1:29520676-29529710:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8604125976562	2	630.860192	1259.70583	0.54665	0.00034486	-0.26033	-0.00016423	0.28632	0.00018063	630.8595479668895	85.924	2.6627	85.924	84.946	87.609	0					263	106	4	0	0	0	0.44828	2	22396	22396;22864		4.897	2.1618	1	2656100			11655	10940	6618	6618	14859;14860	14859					0.08636598809175666
GRRITVQTSSR	11	Unmodified	_GRRITVQTSSR_					0	0	0		ENST00000475773.5_1_1:29520676-29529710:-|nuORF	ENST00000475773.5_1_1:29520676-29529710:-|nuORF	ENST00000475773.5_1_1:29520676-29529710:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.860107421875	2	630.860192	1259.70583	0.3725	0.000235	0.042647	2.6905E-05	0.41515	0.0002619	630.8598084653833	85.62	2.9451	85.704	84.958	87.903	0.084251					357	124	4	0	0	0	0.44828	2	22380	22380;22423		4.897	0.70751	1	2278600			11656	10940	6618	6618	14861;14862	14861					0.08636598809175666
GRRITVQTSSR	11	Unmodified	_GRRITVQTSSR_					0	0	0		ENST00000475773.5_1_1:29520676-29529710:-|nuORF	ENST00000475773.5_1_1:29520676-29529710:-|nuORF	ENST00000475773.5_1_1:29520676-29529710:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.8605346679688	2	630.860192	1259.70583	0.54543	0.00034409	0.43618	0.00027517	0.98161	0.00061926	630.8599476283523	83.106	0.76183	83.086	82.719	83.481	-0.020584					63	29	3	0	0	0	0.44828	1	21720	21720		4.897	0	1	334360			11657	10940	6618	6618	14863	14863					0.08636598809175666
GRRITVQTSSR	11	Unmodified	_GRRITVQTSSR_					0	0	0		ENST00000475773.5_1_1:29520676-29529710:-|nuORF	ENST00000475773.5_1_1:29520676-29529710:-|nuORF	ENST00000475773.5_1_1:29520676-29529710:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.8604125976562	2	630.860192	1259.70583	0.54647	0.00034475	-0.26803	-0.00016909	0.27844	0.00017566	630.8596973214932	85.777	2.7717	85.768	84.981	87.753	-0.0090027					335	114	4	0	0	0	0.44828	4	22380	22380;22428;22516;22615		4.897	2.1618	1	2131100			11658	10940	6618	6618	14864;14865;14866;14867	14864					0.08636598809175666
GRRKMKGLTPV	11	Unmodified	_GRRKMKGLTPV_					0	0	0		ENST00000467789.5_1_3:156266676-156266739:-|nuORF	ENST00000467789.5_1_3:156266676-156266739:-|nuORF	ENST00000467789.5_1_3:156266676-156266739:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3794555664062	2	621.876799	1241.73905	0.29148	0.00018126	0.1416	8.8058E-05	0.43308	0.00026932	621.8764593225637	89.245	0.66531	89.244	88.824	89.489	-0.00081635					49	30	2	0	0	0	0.47649	1	23660	23660		1.1933	0	1	88478			11659	10830	6619	6619	14868	14868					0.12784509327502747
GRRKMKGLTPV	11	Unmodified	_GRRKMKGLTPV_					0	0	0		ENST00000467789.5_1_3:156266676-156266739:-|nuORF	ENST00000467789.5_1_3:156266676-156266739:-|nuORF	ENST00000467789.5_1_3:156266676-156266739:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	621.876799	1241.73905	0.40011	0.00024882	-0.39839	-0.00024775	0.0017236	1.0718E-06	621.8762590821094	89.276	0.5191	89.276	89.007	89.526	0	0.095249	-0.00059944	NaN	1.1933	36	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118220			11660	10830	6619	6619							0.12784509327502747
GRRKMKGLTPV	11	Unmodified	_GRRKMKGLTPV_					0	0	0		ENST00000467789.5_1_3:156266676-156266739:-|nuORF	ENST00000467789.5_1_3:156266676-156266739:-|nuORF	ENST00000467789.5_1_3:156266676-156266739:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	621.876799	1241.73905	0.16006	9.9541E-05	0.30296	0.0001884	0.46303	0.00028795	621.8766029257597	88.933	0.60753	89.023	88.895	89.503	0.090569	-0.15815	0.00027286	NaN	1.1933	42	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96508			11661	10830	6619	6619							0.12784509327502747
GRRKMKGLTPV	11	Unmodified	_GRRKMKGLTPV_					0	0	0		ENST00000467789.5_1_3:156266676-156266739:-|nuORF	ENST00000467789.5_1_3:156266676-156266739:-|nuORF	ENST00000467789.5_1_3:156266676-156266739:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	621.876799	1241.73905	0.29148	0.00018126	0.1416	8.8058E-05	0.43308	0.00026932	621.8764593225637	89.245	0.66531	89.244	88.824	89.489	-0.00081635	0.062905	7.2167E-05	NaN	1.1933	49	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88478			11662	10830	6619	6619							0.12784509327502747
GRRLAERRG	9	Unmodified	_GRRLAERRG_					0	0	0		ENST00000246868.6_1_7:66459313-66460315:-|nuORF	ENST00000246868.6_1_7:66459313-66460315:-|nuORF	ENST00000246868.6_1_7:66459313-66460315:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.8180541992188	2	535.81813	1069.62171	0.6021	0.00032262	0.036471	1.9542E-05	0.63858	0.00034216	535.8179514900069	89.087	0.73714	89.087	88.672	89.41	0					62	31	3	0	0	0	0.33508	1	23549	23549		3.5965	0	1	426820			11663	8903	6620	6620	14869	14869					0.08968112502930126
GRRLAERRG	9	Unmodified	_GRRLAERRG_					0	0	0		ENST00000246868.6_1_7:66459313-66460315:-|nuORF	ENST00000246868.6_1_7:66459313-66460315:-|nuORF	ENST00000246868.6_1_7:66459313-66460315:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8181762695312	2	535.81813	1069.62171	0.41492	0.00022232	0.29422	0.00015765	0.70914	0.00037997	535.8180808146851	88.91	0.72707	89	88.595	89.322	0.090561					72	31	3	0	0	0	0.31417	1	23495	23495		6.7232	0	1	449650			11664	8903	6620	6620	14870	14870					0.08968112502930126
GRRLAERRG	9	Unmodified	_GRRLAERRG_					0	0	0		ENST00000246868.6_1_7:66459313-66460315:-|nuORF	ENST00000246868.6_1_7:66459313-66460315:-|nuORF	ENST00000246868.6_1_7:66459313-66460315:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8180541992188	2	535.81813	1069.62171	0.55908	0.00029957	0.0046102	2.4702E-06	0.56369	0.00030204	535.8179216469548	88.95	0.77422	88.949	88.64	89.415	-0.00080872					73	33	3	0	0	0	0.29638	1	23513	23513		9.3831	0	1	656270			11665	8903	6620	6620	14871	14871					0.08968112502930126
GRRLETRPPI	10	Unmodified	_GRRLETRPPI_					0	0	0			REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF	REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8568115234375	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.186	1	89.277	88.777	89.777	0.090569								0	0	0	0.37157	1	23583	23583		5.7319	2.9967	1		+		11666	16704	6621	6621	14872	14872					0.11018705648439209
GRRLETRPPI	10	Unmodified	_GRRLETRPPI_					0	0	0			REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF	REV__ENST00000489982.1_1_10:98363615-98369622:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8568725585938	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.318	1	89.408	88.908	89.908	0.090569								0	0	0	0.37157	1	23624	23624		5.7319	1.4026	1		+		11667	16704	6621	6621	14873	14873					0.11018705648439209
GRRMRPWR	8	Unmodified	_GRRMRPWR_					0	0	0			REV__ENST00000435216.1_1_1:207936023-207936245:+|nuORF	REV__ENST00000435216.1_1_1:207936023-207936245:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7996215820312	2	557.811793	1113.60903	-0.032671	-1.8224E-05	3.1002	0.0017293	3.0675	0.0017111	557.8140153684853	13.556	0.27103	13.457	13.337	13.608	-0.09929					17	9	2	0	0	0	0.46491	1	491	491		0.69038	0.088878	1	38455	+		11668	20994	6622	6622	14874	14874					0.05677377839037945
GRRRLAKLPG	10	Unmodified	_GRRRLAKLPG_					0	0	0			REV__ENST00000486905.1_1_17:19281885-19283261:+|nuORF	REV__ENST00000486905.1_1_17:19281885-19283261:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3621826171875	2	562.362173	1122.70979	0.17648	9.9243E-05	0.13319	7.49E-05	0.30966	0.00017414	562.3620128970985	97.995	0.31994	98.057	97.87	98.19	0.061516					62	40	2	0	0	0	0.32033	1	26237	26237		3.5965	3.5965	1	490310	+		11669	21557	6623	6623	14875	14875					0.15334733093550312
GRRTGKRFMIG	11	Unmodified	_GRRTGKRFMIG_					0	0	0			REV__ENST00000421201.1_1_2:45878724-45879071:+|nuORF	REV__ENST00000421201.1_1_2:45878724-45879071:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.9419860839844	3	426.911907	1277.71389	0.11914	5.086E-05	1.9169	0.00081836	2.0361	0.00086922	426.91276366915713	37.853	0.27368	37.853	37.707	37.98	0					15	9	2	0	0	0	0.32951	1	7824	7824		7.0371	0.84524	1	123220	+		11670	20864	6624	6624	14876	14876					0.08614454524945359
GRRWRRRRRPK	11	Unmodified	_GRRWRRRRRPK_					0	0	0		ENST00000560168.1_1_19:46269581-46272089:-|nuORF	ENST00000560168.1_1_19:46269581-46272089:-|nuORF	ENST00000560168.1_1_19:46269581-46272089:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.24755859375	3	527.329558	1578.96685	0.2225	0.00011733	-0.40855	-0.00021544	-0.18605	-9.8112E-05	527.3296368935127	101.26	0.50892	101.29	101.09	101.6	0.027214					127	65	3	0	0	0	0.33351	1	27017	27017		0.094841	0	1	221430			11671	11892	6625	6625	14877	14877					0.2005206809021729
GRRWRRRRRPK	11	Unmodified	_GRRWRRRRRPK_					0	0	0		ENST00000560168.1_1_19:46269581-46272089:-|nuORF	ENST00000560168.1_1_19:46269581-46272089:-|nuORF	ENST00000560168.1_1_19:46269581-46272089:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.6634521484375	3	527.329558	1578.96685	0.44698	0.00023571	-0.32552	-0.00017165	0.12147	6.4053E-05	527.3295879111223	101.44	0.52564	101.44	101.2	101.72	-0.0054703					93	68	2	0	0	0	0.48212	2	27065	27065;27114		0.45452	0.35968	1	219040			11672	11892	6625	6625	14878;14879	14878					0.2005206809021729
GRSYAVNSI	9	Unmodified	_GRSYAVNSI_					0	0	0		ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.3130798339844	2	483.753798	965.493044	0.44933	0.00021736	2.7702	0.0013401	3.2195	0.0015574	483.75610958700645	79.441	0.11566	79.412	79.327	79.443	-0.028931					6	4	2	0	0	0	0.1939	1	20576	20576		30.637	5.9627	1	51880			11673	3142	6626	6626	14880	14880					0.008917127493305088
GRTRVAKA	8	Unmodified	_GRTRVAKA_					0	0	0			REV__ENST00000482416.5_1_1:46087308-46089051:-|nuORF	REV__ENST00000482416.5_1_1:46087308-46089051:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.7672424316406	2	429.767043	857.519533	-0.024311	-1.0448E-05	0.045965	1.9754E-05	0.021653	9.306E-06	429.7669550518571	74.156	0.67574	74.125	73.938	74.614	-0.030655					26	23	2	0	0	0	0.46092	1	18994	18994		2.0598	0	1	318020	+		11674	21497	6627	6627	14881	14881					0.08507446431315202
GRVLPPPIVS	10	Unmodified	_GRVLPPPIVS_					0	0	0			REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	REV__nc|ENSG00000167491|Q86YP4-2|GATAD2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8195190429688	2	517.821484	1033.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.149	1	83.149	82.649	83.649	0								0	0	0	0.37044	1	21740	21740		6.2058	1.4498	1		+		11675	17386	6628	6628	14882	14882					0.11294612610936383
GRWLLPQFSL	10	Unmodified	_GRWLLPQFSL_					0	0	0		ENST00000588161.5_1_19:36128459-36128567:+|nuORF	ENST00000588161.5_1_19:36128459-36128567:+|nuORF	ENST00000588161.5_1_19:36128459-36128567:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.908203125	3	406.232752	1215.67643	-0.32892	-0.00013362	0.44301	0.00017996	0.11408	4.6343E-05	406.2329593181408	30.38	0.51446	30.407	30.189	30.704	0.027157					40	17	3	0	0	0	0.32051	1	5610	5610		1.9064	0	1	209910			11676	12139	6629	6629	14883	14883					0.07721686530976513
GRWLLPQFSL	10	Unmodified	_GRWLLPQFSL_					0	0	0		ENST00000588161.5_1_19:36128459-36128567:+|nuORF	ENST00000588161.5_1_19:36128459-36128567:+|nuORF	ENST00000588161.5_1_19:36128459-36128567:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	406.232752	1215.67643	-0.0093611	-3.8028E-06	0.10521	4.274E-05	0.09585	3.8937E-05	406.23269808211734	30.357	0.42068	30.357	30.167	30.587	0	-0.031533	-0.00011911	NaN	0.69767	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159810			11677	12139	6629	6629							0.07721686530976513
GRWLLPQFSL	10	Unmodified	_GRWLLPQFSL_					0	0	0		ENST00000588161.5_1_19:36128459-36128567:+|nuORF	ENST00000588161.5_1_19:36128459-36128567:+|nuORF	ENST00000588161.5_1_19:36128459-36128567:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	406.232752	1215.67643	0.0095936	3.8972E-06	-0.24405	-9.9141E-05	-0.23446	-9.5244E-05	406.2326803613047	30.373	0.58986	30.401	30.131	30.721	0.027948	0.012865	-0.00054475	NaN	0.69767	50	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163720			11678	12139	6629	6629							0.07721686530976513
GSAFSTSISK	10	Unmodified	_GSAFSTSISK_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2384338378906	2	492.753464	983.492375	0.47323	0.00023318	-1.2073	-0.0005949	-0.73407	-0.00036172	492.75272886830635	30.169	0.38951	30.169	29.97	30.359	0					27	13	3	0	0	0	0.29874	1	5483	5483		20.581	7.5385	1	95072			11679	7103	6630	6630	14884	14884					-3.126690364751994E-05
GSAFSTSISK	10	Unmodified	_GSAFSTSISK_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.2391052246094	2	492.753464	983.492375	0.43924	0.00021644	-0.97957	-0.00048269	-0.54033	-0.00026625	492.7528771789445	30.198	0.41764	30.226	29.992	30.409	0.027946					25	14	2	0	0	0	0.3179	1	5456	5456		8.9762	3.2158	1	170540			11680	7103	6630	6630	14885	14885					-3.126690364751994E-05
GSAFSTSISK	10	Unmodified	_GSAFSTSISK_					0	0	0		ENST00000592662.5_1_19:13039347-13044510:-|nuORF;ENSG00000179115|ENST00000314606|FARSA	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	ENST00000592662.5_1_19:13039347-13044510:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.23876953125	2	492.753464	983.492375	0.040604	2.0008E-05	-0.61555	-0.00030331	-0.57494	-0.0002833	492.7530169977281	30.138	0.46559	30.165	29.956	30.422	0.027157					37	15	4	0	0	0	0.2361	1	5475	5475		28.234	12.085	1	187820			11681	7103	6630	6630	14886	14886					-3.126690364751994E-05
GSAQQFNVK	9	Unmodified	_GSAQQFNVK_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.7538757324219	2	489.753798	977.493044	0.10987	5.3811E-05	-0.089568	-4.3866E-05	0.020306	9.9451E-06	489.7537789862914	22.675	0.68656	22.675	22.36	23.047	0					51	23	3	0	0	0	0.0090577	1	3227	3227		89.401	43.38	1	280350			11682	500	6631	6631	14887	14887					0.0033971274932582674
GSAQQFNVK	9	Unmodified	_GSAQQFNVK_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.75390625	2	489.753798	977.493044	0.10426	5.106E-05	0.057288	2.8057E-05	0.16154	7.9117E-05	489.75376204814245	22.773	0.67384	22.685	22.403	23.077	-0.087608					56	23	3	0	0	0	0.000775	1	3257	3257		122.18	51.046	1	287090			11683	500	6631	6631	14888	14888					0.0033971274932582674
GSAQQFNVK	9	Unmodified	_GSAQQFNVK_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.7539367675781	2	489.753798	977.493044	0.18231	8.9287E-05	-0.38873	-0.00019038	-0.20642	-0.0001011	489.75375267357714	22.777	0.63794	22.732	22.471	23.109	-0.044867					63	22	4	0	0	0	0.0063009	1	3251	3251		99.755	47.487	1	310460			11684	500	6631	6631	14889	14889					0.0033971274932582674
GSAQQFNVKK	10	Unmodified	_GSAQQFNVKK_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8014526367188	2	553.80128	1105.58801	0.27427	0.00015189	0.24293	0.00013453	0.5172	0.00028643	553.8012844591098	16.824	0.5197	16.824	16.521	17.041	0					29	17	2	0	0	0	0.29092	1	1441	1441		21.537	14.814	1	150860			11685	500	6632	6632	14890	14890					0.03943646220500341
GSAQQFNVKK	10	Unmodified	_GSAQQFNVKK_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8018798828125	2	553.80128	1105.58801	0.15159	8.3948E-05	0.41576	0.00023025	0.56734	0.00031419	553.8014334605754	16.906	0.52405	16.791	16.56	17.084	-0.11434					34	18	3	0	0	0	0.35231	1	1494	1494		12.241	12.241	1	100540			11686	500	6632	6632	14891	14891					0.03943646220500341
GSAQQFNVKK	10	Unmodified	_GSAQQFNVKK_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8016967773438	2	553.80128	1105.58801	0.33228	0.00018402	0.35121	0.0001945	0.68349	0.00037852	553.8014371866798	16.82	0.49064	16.757	16.586	17.077	-0.062532					29	17	2	0	0	0	0.21126	1	1453	1453		31.268	21.194	1	129040			11687	500	6632	6632	14892	14892					0.03943646220500341
GSATYWSG	8	Unmodified	_GSATYWSG_					0	0	0			REV__nc|ENSG00000162959|Q9Y316-2|MEMO1	REV__nc|ENSG00000162959|Q9Y316-2|MEMO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.679443359375	2	414.679768	827.344983	0.38779	0.00016081	-0.36066	-0.00014956	0.027125	1.1248E-05	414.6795099808253	91.176	0.89865	91.177	90.738	91.636	0.00046539					142	65	3	0	0	0	0.45169	1	24126	24126		5.2307	0	1	2444900	+		11688	17026	6633	6633	14893	14893					-0.07559598504519727
GSAVSERKERI	11	Unmodified	_GSAVSERKERI_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2299499511719	3	411.229959	1230.66805	-0.22194	-9.1267E-05	-0.23225	-9.5508E-05	-0.45419	-0.00018678	411.22972054719406	25.447	0.61031	25.415	25.154	25.764	-0.031408					56	21	4	0	0	0	0.42582	1	4034	4034		7.846	1.9779	1	171720	+		11689	15528	6634	6634	14894	14894					0.061940878237237484
GSAVSERKERI	11	Unmodified	_GSAVSERKERI_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	411.229959	1230.66805	-0.15174	-6.2399E-05	-0.099172	-4.0782E-05	-0.25091	-0.00010318	411.22973246200877	25.378	0.67715	25.378	25.064	25.741	0	0.0067928	0.00031631	NaN	7.846	56	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227020	+		11690	15528	6634	6634							0.061940878237237484
GSAVSERKERI	11	Unmodified	_GSAVSERKERI_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.229959	1230.66805	-0.088211	-3.6275E-05	-0.71766	-0.00029512	-0.80587	-0.0003314	411.22960993785125	25.376	0.54607	25.32	25.074	25.62	-0.055931	-0.051309	-0.00044671	NaN	7.846	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206320	+		11691	15528	6634	6634							0.061940878237237484
GSAVSERKERI	11	Unmodified	_GSAVSERKERI_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	411.229959	1230.66805	-0.22194	-9.1267E-05	-0.23225	-9.5508E-05	-0.45419	-0.00018678	411.22972054719406	25.447	0.61031	25.415	25.154	25.764	-0.031408	0.044517	0.00015213	NaN	7.846	56	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171720	+		11692	15528	6634	6634							0.061940878237237484
GSCFHWYL	8	Unmodified	_GSCFHWYL_					0	0	0			REV__Harlequin-int_dup450|chr19:20431743-20432120:-|1.2197279849549596|0.0051189043635829|7.9|511.0|13|3|sense	REV__Harlequin-int_dup450|chr19:20431743-20432120:-|1.2197279849549596|0.0051189043635829|7.9|511.0|13|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.272216796875	2	506.720913	1011.42727	0.14482	7.3386E-05	2.713	0.0013748	2.8579	0.0014481	506.722514139863	23.431	0.13853	23.343	23.242	23.381	-0.087608					6	4	2	0	0	0	0.3439	1	3438	3438		2.8892	0.58649	1	20822	+		11693	22728	6635	6635	14895	14895					-0.07798399697230707
GSDPYQEPK	9	Unmodified	_GSDPYQEPK_					0	0	0		nc|ENSG00000185813|Q99447-2|PCYT2;nc|ENSG00000185813|Q99447-4|PCYT2;ENSG00000185813|ENST00000538936|PCYT2;nc|ENSG00000185813|Q99447-3|PCYT2;ENST00000574343.5_1_17:79862711-79863545:-|nuORF	nc|ENSG00000185813|Q99447-2|PCYT2	nc|ENSG00000185813|Q99447-2|PCYT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2785949707031	2	510.735271	1019.45599	0.27483	0.00014037	-0.16368	-8.3597E-05	0.11115	5.6769E-05	511.23647188920194	19.744	0.6115	19.628	19.341	19.952	-0.11592					31	20	2	0	0	0	0.25323	1	2340	2340		10.074	5.7447	1	53939			11694	7559	6636	6636	14896	14896					-0.05296003587091036
GSDTTWQLT	9	Unmodified	_GSDTTWQLT_					0	0	0			REV__ENSG00000138380|ENST00000438828|CARF	REV__ENSG00000138380|ENST00000438828|CARF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7718200683594	2	504.735271	1007.45599	0.23312	0.00011766	1.0122	0.00051091	1.2453	0.00062857	504.7355660381722	61.939	0.43792	61.939	61.677	62.115	0					20	15	2	0	0	0	0.20651	1	15177	15177		26.884	0	1	147510	+		11695	15925	6637	6637	14897	14897					-0.047440035870977226
GSELRVQAGAP	11	Unmodified	_GSELRVQAGAP_					0	0	0			REV__ENSG00000163501|ENST00000295731|IHH	REV__ENSG00000163501|ENST00000295731|IHH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.811279296875	2	542.790912	1083.56727	0.71805	0.00038975	-0.9413	-0.00051093	-0.22325	-0.00012118	542.7908435036034	26.788	0.76675	26.777	26.42	27.187	-0.01156					66	26	4	0	0	0	0.40332	1	4514	4514		10.8	1.4164	1	469130	+		11696	17059	6638	6638	14898	14898					0.02883055840857196
GSEWLAFVK	9	Unmodified	_GSEWLAFVK_					0	0	0			REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.7767944335938	2	518.776742	1035.53893	0.25516	0.00013237	0.4016	0.00020834	0.65676	0.00034071	518.7766509152814	69.339	0.99464	69.339	68.708	69.703	0					64	35	3	0	0	0	0.14076	2	17492	17492;17545		32.305	32.305	1	1072100	+		11697	13608	6639	6639	14899;14900	14899					0.022583579315551106
GSEWLAFVK	9	Unmodified	_GSEWLAFVK_					0	0	0			REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7770385742188	2	518.776742	1035.53893	0.30243	0.00015689	0.38634	0.00020043	0.68878	0.00035732	518.7766784703728	69.287	1.5323	69.353	68.8	70.332	0.066048					72	54	2	0	0	0	0.14076	1	17459	17459		32.305	1.6689	1	1108500	+		11698	13608	6639	6639	14901	14901					0.022583579315551106
GSEWLAFVK	9	Unmodified	_GSEWLAFVK_					0	0	0			REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7767333984375	2	518.776742	1035.53893	0.2204	0.00011434	0.75846	0.00039347	0.97886	0.00050781	518.7766967291886	69.349	1.1369	69.326	69.026	70.163	-0.022087					80	40	4	0	0	0	0.14076	1	17489	17489		32.305	3.2239	1	1026500	+		11699	13608	6639	6639	14902	14902					0.022583579315551106
GSFEVVSTLIK	11	Unmodified	_GSFEVVSTLIK_					0	0	0		ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.334716796875	2	590.334621	1178.65469	0.45954	0.00027128	-0.44656	-0.00026362	0.012979	7.6618E-06	590.3342396717148	62.629	0.61485	62.629	62.396	63.011	0					51	22	3	0	0	0	9.0647E-06	1	15447	15447		125.18	54.253	1	978760			11700	2910	6640	6640	14903	14903					0.07250836991761389
GSFEVVSTLIK	11	Unmodified	_GSFEVVSTLIK_					0	0	0		ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.33447265625	2	590.334621	1178.65469	0.45471	0.00026843	-0.50231	-0.00029653	-0.0476	-2.81E-05	590.3342327128327	62.537	0.68491	62.634	62.383	63.068	0.096985					53	24	3	0	0	0	1.9818E-05	1	15405	15405		115.06	44.13	1	903300			11701	2910	6640	6640	14904	14904					0.07250836991761389
GSFEVVSTLIK	11	Unmodified	_GSFEVVSTLIK_					0	0	0		ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	ENSG00000119820|ENST00000238831|YIPF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.3345947265625	2	590.334621	1178.65469	0.39514	0.00023327	-0.43886	-0.00025907	-0.043714	-2.5806E-05	590.334266954863	62.614	0.58574	62.605	62.353	62.938	-0.0085526					52	21	3	0	0	0	9.0647E-06	1	15449	15449		125.18	45.754	1	914030			11702	2910	6640	6640	14905	14905					0.07250836991761389
GSFGKVFLV	9	Unmodified	_GSFGKVFLV_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENST00000525582.1_1_1:26873450-26873871:+|nuORF;ENST00000474266.1_1_X:20222119-20236956:-|nuORF;ENST00000524436.5_1_1:26856411-26877988:+|nuORF;ENST00000530607.1_1_1:26872355-26877988:+|nuORF;RPS6KA6|p.G625Sfs*19|1|0.06|ENSG00000072133|chrX:84096292-84096293|-/ATATGTAAGTGTTTTGA|frameshift_variant;nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENSG00000072133|ENST00000262752|RPS6KA6;ENSG00000177189|ENST00000379565|RPS6KA3	nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.2763977050781	2	477.276378	952.538203	0.59291	0.00028298	-0.082607	-3.9426E-05	0.5103	0.00024356	477.2761432334853	60.65	0.43869	60.65	60.441	60.88	0					43	15	4	0	0	0	0.069366	2	14843	14843;14893		45.7	11.597	1	1142000			11703	2805;6969	6641	6641	14906;14907	14906					0.06003563282513369
GSFGKVFLV	9	Unmodified	_GSFGKVFLV_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENST00000525582.1_1_1:26873450-26873871:+|nuORF;ENST00000474266.1_1_X:20222119-20236956:-|nuORF;ENST00000524436.5_1_1:26856411-26877988:+|nuORF;ENST00000530607.1_1_1:26872355-26877988:+|nuORF;RPS6KA6|p.G625Sfs*19|1|0.06|ENSG00000072133|chrX:84096292-84096293|-/ATATGTAAGTGTTTTGA|frameshift_variant;nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENSG00000072133|ENST00000262752|RPS6KA6;ENSG00000177189|ENST00000379565|RPS6KA3	nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.2765808105469	2	477.276378	952.538203	0.65218	0.00031127	-0.11241	-5.3651E-05	0.53977	0.00025762	477.27615187214906	60.602	0.41872	60.699	60.477	60.896	0.096985					41	14	4	0	0	0	0.03069	2	14808	14808;14859		60.074	25.971	1	923350			11704	2805;6969	6641	6641	14908;14909	14908					0.06003563282513369
GSFIISKTTRE	11	Unmodified	_GSFIISKTTRE_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10;nc|ENSG00000152580|Q6WRI0-3|IGSF10;nc|ENSG00000152580|Q6WRI0-2|IGSF10;ENST00000495443.1_1_3:151154479-151158406:-|nuORF	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.56256103515625	3	413.562827	1237.66665	0.14523	6.006E-05	-0.13766	-5.6932E-05	0.0075629	3.1277E-06	413.5627127443148	39.362	1.0055	39.455	39.17	40.176	0.09267					115	35	5	0	0	0	0.43809	2	8259	8259;8361		6.2344	0	1	1987000			11705	5026	6642	6642	14910;14911	14910					0.05732453734913179
GSFKERFTY	9	Unmodified	_GSFKERFTY_					0	0	0			REV__TRIM62|p.P446S|1|0.33|ENSG00000116525|chr1:33147269-33147269|G/A|missense_variant	REV__TRIM62|p.P446S|1|0.33|ENSG00000116525|chr1:33147269-33147269|G/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.78173828125	2	567.782556	1133.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.74	1	111.75	111.25	112.25	0.0131								0	0	0	0.23852	1	29089	29089		10.074	1.4806	1		+		11706	23343	6643	6643	14912	14912					-0.01087445045095592
GSFLITLEK	9	Unmodified	_GSFLITLEK_					0	0	0		nc|ENSG00000132840|Q9H2M3-2|BHMT2;ENSG00000132840|ENST00000255192|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2926940917969	2	504.292225	1006.5699	0.32689	0.00016485	0.16934	8.5396E-05	0.49623	0.00025025	504.2923166181032	56.962	0.69276	57.04	56.704	57.397	0.078674					58	23	3	0	0	0	0.0016724	1	13712	13712		114.19	24.051	1	1037200			11707	3669	6644	6644	14913	14913					0.06687511245809219
GSFLITLEK	9	Unmodified	_GSFLITLEK_					0	0	0		nc|ENSG00000132840|Q9H2M3-2|BHMT2;ENSG00000132840|ENST00000255192|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.29254150390625	2	504.292225	1006.5699	0.28741	0.00014494	-0.010277	-5.1824E-06	0.27714	0.00013976	504.29229046015695	57.127	0.71458	57.108	56.838	57.553	-0.019081					57	25	3	0	0	0	0.00078897	1	13762	13762		114.19	24.051	1	1085500			11708	3669	6644	6644	14914	14914					0.06687511245809219
GSFLQQFLK	9	Unmodified	_GSFLQQFLK_					0	0	0		ENSG00000105705|ENST00000247001|SUGP1;ENST00000606725.5_1_19:19414686-19431305:-|nuORF;ENST00000588580.6_1_19:19416529-19427355:-|nuORF;nc|ENSG00000105705|Q8IWZ8-2|SUGP1;SUGP1|p.L223Cfs*19|1|0.21|ENSG00000105705|chr19:19303443-19303443|A/-|frameshift_variant	ENSG00000105705|ENST00000247001|SUGP1	ENSG00000105705|ENST00000247001|SUGP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2986450195312	2	534.297842	1066.58113	0.49934	0.00026679	1.9936	0.0010652	2.4929	0.001332	534.2985822545477	67.734	0.62462	67.812	67.488	68.112	0.078041					51	21	5	0	0	0	0.0023784	1	17032	17032		107.19	57.254	1	425350			11709	2012	6645	6645	14915	14915					0.05050333339931967
GSFLQQFLK	9	Unmodified	_GSFLQQFLK_					0	0	0		ENSG00000105705|ENST00000247001|SUGP1;ENST00000606725.5_1_19:19414686-19431305:-|nuORF;ENST00000588580.6_1_19:19416529-19427355:-|nuORF;nc|ENSG00000105705|Q8IWZ8-2|SUGP1;SUGP1|p.L223Cfs*19|1|0.21|ENSG00000105705|chr19:19303443-19303443|A/-|frameshift_variant	ENSG00000105705|ENST00000247001|SUGP1	ENSG00000105705|ENST00000247001|SUGP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.29931640625	2	534.297842	1066.58113	0.43838	0.00023423	1.247	0.00066627	1.6854	0.0009005	534.2986776731008	67.85	0.55799	67.834	67.593	68.151	-0.016296					34	19	2	0	0	0	0.20679	1	17115	17115		22.658	10.127	1	401730			11710	2012	6645	6645	14916	14916					0.05050333339931967
GSFLQQFLK	9	Unmodified	_GSFLQQFLK_					0	0	0		ENSG00000105705|ENST00000247001|SUGP1;ENST00000606725.5_1_19:19414686-19431305:-|nuORF;ENST00000588580.6_1_19:19416529-19427355:-|nuORF;nc|ENSG00000105705|Q8IWZ8-2|SUGP1;SUGP1|p.L223Cfs*19|1|0.21|ENSG00000105705|chr19:19303443-19303443|A/-|frameshift_variant	ENSG00000105705|ENST00000247001|SUGP1	ENSG00000105705|ENST00000247001|SUGP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	534.297842	1066.58113	0.49583	0.00026492	0.77617	0.00041471	1.272	0.00067963	534.2981885694043	67.816	0.48196	67.816	67.592	68.074	0	-0.004554	-0.00061389	NaN	107.19	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446690			11711	2012	6645	6645							0.05050333339931967
GSFVGELMYK	10	Oxidation (M)	_GSFVGELM(Oxidation (M))YK_		GSFVGELM(1)YK		GSFVGELM(63)YK	0	0	1		nc|ENSG00000004864|Q9UJS0-2|SLC25A13;ENSG00000004864|ENST00000265631|SLC25A13;ENST00000484495.5_1_7:95799231-95818686:-|nuORF	nc|ENSG00000004864|Q9UJS0-2|SLC25A13	nc|ENSG00000004864|Q9UJS0-2|SLC25A13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.778564453125	2	573.778625	1145.5427	0.44087	0.00025296	-0.61607	-0.00035349	-0.1752	-0.00010052	573.7783741011219	48.327	0.89954	48.327	48.012	48.912	0					50	21	3	0	0	0	0.030754	1	11091	11091		63.227	30.442	1	1441300			11712	317	6646	6646	14917	14917		27			-0.024253403568991416
GSFVGELMYK	10	Oxidation (M)	_GSFVGELM(Oxidation (M))YK_		GSFVGELM(1)YK		GSFVGELM(81)YK	0	0	1		nc|ENSG00000004864|Q9UJS0-2|SLC25A13;ENSG00000004864|ENST00000265631|SLC25A13;ENST00000484495.5_1_7:95799231-95818686:-|nuORF	nc|ENSG00000004864|Q9UJS0-2|SLC25A13	nc|ENSG00000004864|Q9UJS0-2|SLC25A13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.7784423828125	2	573.778625	1145.5427	0.72569	0.00041638	1.2728	0.00073031	1.9985	0.0011467	573.7782042700273	48.347	0.74945	48.394	48.049	48.799	0.047523					82	27	4	0	0	0	0.011792	1	11051	11051		80.676	53.047	1	1418700			11713	317	6646	6646	14918	14918		27			-0.024253403568991416
GSFVGELMYK	10	Oxidation (M)	_GSFVGELM(Oxidation (M))YK_					0	0	1		nc|ENSG00000004864|Q9UJS0-2|SLC25A13;ENSG00000004864|ENST00000265631|SLC25A13;ENST00000484495.5_1_7:95799231-95818686:-|nuORF	nc|ENSG00000004864|Q9UJS0-2|SLC25A13	nc|ENSG00000004864|Q9UJS0-2|SLC25A13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	573.778625	1145.5427	0.47358	0.00027173	-0.48532	-0.00027847	-0.011742	-6.7374E-06	573.7783718394801	48.224	0.68507	48.268	47.987	48.672	0.04332	-0.061924	1.7653E-07	NaN	80.676	53	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1521600			11714	317	6646	6646				27			-0.024253403568991416
GSGAFGTVYK	10	Unmodified	_GSGAFGTVYK_					0	0	0		nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2;nc|ENSG00000141736|P04626-6|ERBB2;ENST00000583038.5_1_17:37872360-37881463:+|nuORF;ENST00000484594.5_1_2:212426591-213403254:-|nuORF;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4;ENSG00000146648|ENST00000275493|EGFR	nc|ENSG00000141736|P04626-5|ERBB2;ENSG00000146648|ENST00000275493|EGFR	nc|ENSG00000141736|P04626-5|ERBB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7513427734375	2	493.750724	985.486896	0.78508	0.00038763	-0.13654	-6.7417E-05	0.64854	0.00032022	493.7506147995431	33.567	0.52371	33.633	33.38	33.904	0.06636					39	18	3	0	0	0	0.28174	1	6575	6575		22.658	4.5231	1	331670			11715	4408;4720	6647	6647	14919	14919					-0.006428054821981277
GSGAFGTVYK	10	Unmodified	_GSGAFGTVYK_					0	0	0		nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2;nc|ENSG00000141736|P04626-6|ERBB2;ENST00000583038.5_1_17:37872360-37881463:+|nuORF;ENST00000484594.5_1_2:212426591-213403254:-|nuORF;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4;ENSG00000146648|ENST00000275493|EGFR	nc|ENSG00000141736|P04626-5|ERBB2;ENSG00000146648|ENST00000275493|EGFR	nc|ENSG00000141736|P04626-5|ERBB2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.750724	985.486896	0.65463	0.00032322	-0.14711	-7.2635E-05	0.50752	0.00025059	493.7505414336937	33.745	0.679	33.745	33.456	34.135	0	0.070932	-0.00019089	NaN	22.658	42	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327960			11716	4408;4720	6647	6647							-0.006428054821981277
GSGAFGTVYK	10	Unmodified	_GSGAFGTVYK_					0	0	0		nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2;nc|ENSG00000141736|P04626-6|ERBB2;ENST00000583038.5_1_17:37872360-37881463:+|nuORF;ENST00000484594.5_1_2:212426591-213403254:-|nuORF;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4;ENSG00000146648|ENST00000275493|EGFR	nc|ENSG00000141736|P04626-5|ERBB2;ENSG00000146648|ENST00000275493|EGFR	nc|ENSG00000141736|P04626-5|ERBB2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.750724	985.486896	0.18677	9.222E-05	0.59687	0.0002947	0.78364	0.00038692	493.75085310127645	33.577	0.65975	33.643	33.387	34.047	0.0667	-0.030281	0.00054379	NaN	22.658	42	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419900			11717	4408;4720	6647	6647							-0.006428054821981277
GSGEFGSVFK	10	Unmodified	_GSGEFGSVFK_					0	0	0		ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3023986816406	2	507.748182	1013.48181	0.26272	0.0001334	0.35641	0.00018097	0.61913	0.00031436	507.748196880856	44.097	0.37712	44.097	43.878	44.255	0					18	13	2	0	0	0	0.30076	1	9727	9727		17.443	12.687	1	182430			11718	6085	6648	6648	14920	14920					-0.02439109344800272
GSGEFGSVFK	10	Unmodified	_GSGEFGSVFK_					0	0	0		ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.30218505859375	2	507.748182	1013.48181	0.33646	0.00017084	0.17658	8.9657E-05	0.51304	0.00026049	507.7482544680031	43.734	0.41668	43.818	43.604	44.02	0.083992					25	15	2	0	0	0	0.30555	1	9635	9635		20.415	2.2796	1	234830			11719	6085	6648	6648	14921	14921					-0.02439109344800272
GSGGHPRRRQ	10	Unmodified	_GSGGHPRRRQ_					0	0	0		nc|ENSG00000243708|P0C869-7|PLA2G4B	nc|ENSG00000243708|P0C869-7|PLA2G4B	nc|ENSG00000243708|P0C869-7|PLA2G4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.298583984375	2	554.297562	1106.58057	0.22368	0.00012398	1.3578	0.00075262	1.5815	0.0008766	554.2988389574132	93.319	0.77661	93.319	92.992	93.768	0					177	69	4	0	0	0	0.38773	1	24836	24836		5.7319	5.7319	1	269530			11720	12970	6649	6649	14922	14922					0.03154351463444982
GSGGHPRRRQ	10	Unmodified	_GSGGHPRRRQ_					0	0	0		nc|ENSG00000243708|P0C869-7|PLA2G4B	nc|ENSG00000243708|P0C869-7|PLA2G4B	nc|ENSG00000243708|P0C869-7|PLA2G4B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	554.297562	1106.58057	0.22368	0.00012398	1.3578	0.00075262	1.5815	0.0008766	554.2988389574132	93.319	0.77661	93.319	92.992	93.768	0	0	0	NaN	5.7319	177	69	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269530			11721	12970	6649	6649							0.03154351463444982
GSGMGTLLLSK	11	Unmodified	_GSGMGTLLLSK_					0	0	0		ENSG00000261456|ENST00000568584|TUBB8	ENSG00000261456|ENST00000568584|TUBB8	ENSG00000261456|ENST00000568584|TUBB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.8109130859375	2	532.294442	1062.57433	0.85963	0.00045758	1.2857	0.00068435	2.1453	0.0011419	532.294573228061	50.219	1.1213	50.264	49.645	50.766	0.044891					139	41	5	0	0	0	0.087802	1	11620	11620		42.312	0	1	3887800			11722	8660	6650	6650	14923	14923					0.04554652397064274
GSGPITLLL	9	Unmodified	_GSGPITLLL_					0	0	0		ENST00000409655.5_2_11:289177-290766:+|nuORF;nc|ENSG00000142102|Q32M88-2|PGGHG;ENST00000474221.5_1_11:289135-291269:+|nuORF;ENSG00000142102|ENST00000409548|PGGHG	ENST00000409655.5_2_11:289177-290766:+|nuORF;ENSG00000142102|ENST00000409548|PGGHG	ENST00000409655.5_2_11:289177-290766:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.76812744140625	2	435.768386	869.522219	-0.014506	-6.321E-06	-0.50514	-0.00022013	-0.51965	-0.00022645	435.767999658969	66.823	0.64706	66.907	66.572	67.219	0.083832					67	22	4	0	0	0	0.25314	1	16696	16696		15.847	1.0089	1	1278100			11723	10254;4423	6651	6651	14924	14924					0.08223857045629757
GSGPQAYPK	9	Unmodified	_GSGPQAYPK_					0	0	0		ENSG00000099999|ENST00000382363|RNF215	ENSG00000099999|ENST00000382363|RNF215	ENSG00000099999|ENST00000382363|RNF215	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.7298889160156	2	452.729792	903.445031	0.13056	5.9108E-05	1.3911	0.00062981	1.5217	0.00068892	452.7295161662632	16.95	0.28234	16.95	16.839	17.122	0					17	9	2	0	0	0	0.31417	1	1496	1496		6.7232	1.9672	1	29023			11724	1514	6652	6652	14925	14925					-0.010553611707223354
GSGPQAYPK	9	Unmodified	_GSGPQAYPK_					0	0	0		ENSG00000099999|ENST00000382363|RNF215	ENSG00000099999|ENST00000382363|RNF215	ENSG00000099999|ENST00000382363|RNF215	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	452.729792	903.445031	-0.022762	-1.0305E-05	0.91607	0.00041473	0.89331	0.00040443	452.7295291909196	17.127	0.43076	17.01	16.8	17.231	-0.11739	0.029682	-0.00011682	NaN	6.7232	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27169			11725	1514	6652	6652							-0.010553611707223354
GSGVCWLLL	9	Unmodified	_GSGVCWLLL_					0	0	0		ENST00000376395.8_2_9:86322580-86322796:-|nuORF	ENST00000376395.8_2_9:86322580-86322796:-|nuORF	ENST00000376395.8_2_9:86322580-86322796:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7821350097656	2	474.254588	946.494624	0.1688	8.0052E-05	-2.8233	-0.0013389	-2.6545	-0.0012589	474.25272535777043	28.905	0.13438	28.905	28.817	28.952	0					8	4	3	0	0	0	0.24913	1	5098	5098		12.532	6.7711	1	58574			11726	9922	6653	6653	14926	14926					0.01923630513738317
GSGYPNDPK	9	Unmodified	_GSGYPNDPK_					0	0	0		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7167053222656	2	467.716882	933.41921	-0.18212	-8.5182E-05	-0.26574	-0.00012429	-0.44787	-0.00020947	467.71666288957357	15.8	0.94035	15.8	15.382	16.322	0					65	32	3	0	0	0	0.19905	2	1164	1164;1216		23.79	15.197	1	124080			11727	1932	6654	6654	14927;14928	14927					-0.05016255413011095
GSGYPNDPK	9	Unmodified	_GSGYPNDPK_					0	0	0		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7164306640625	2	467.716882	933.41921	-0.1367	-6.3937E-05	-0.28134	-0.00013159	-0.41804	-0.00019553	467.716670536416	15.975	0.84402	15.861	15.403	16.247	-0.11434					62	28	3	0	0	0	0.24467	1	1196	1196		17.113	11.882	1	124370			11728	1932	6654	6654	14929	14929					-0.05016255413011095
GSGYPNDPK	9	Unmodified	_GSGYPNDPK_					0	0	0		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7165222167969	2	467.716882	933.41921	0.016242	7.5966E-06	-0.57597	-0.00026939	-0.55973	-0.0002618	467.71655806481374	15.884	0.78413	15.822	15.393	16.177	-0.062534					61	26	3	0	0	0	0.14786	1	1172	1172		31.268	31.268	1	124100			11729	1932	6654	6654	14930	14930					-0.05016255413011095
GSIDAITGK	9	Unmodified	_GSIDAITGK_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.2377014160156	2	431.23745	860.460347	0.10787	4.6517E-05	0.65087	0.00028068	0.75873	0.00032719	431.2376366214655	29.173	0.62691	29.173	28.924	29.551	0					44	22	3	0	0	0	0.015027	1	5207	5207		71.708	35.581	1	328040			11730	307	6655	6655	14931	14931					0.024535056264767263
GSIDAITGK	9	Unmodified	_GSIDAITGK_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8884582519531	2	431.23745	860.460347	-0.024991	-1.0777E-05	1.4227	0.00061352	1.3977	0.00060274	431.23772630978135	29.128	0.73881	29.14	28.915	29.654	0.012266					47	25	2	0	0	0	0.152	1	5180	5180		43.982	14.9	1	312490			11731	307	6655	6655	14932	14932					0.024535056264767263
GSIEIDIPVPK	11	Unmodified	_GSIEIDIPVPK_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000464601.5_1_3:182733228-182740387:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.808349609375	2	584.334621	1166.65469	0.13611	7.9534E-05	-4.13	-0.0024133	-3.9939	-0.0023338	584.3321183481364	62.095	0.54494	62.192	61.952	62.497	0.096985					31	19	2	0	0	0	0.3245	1	15246	15246		17.443	3.5366	1	173350			11732	1103	6656	6656	14933	14933					0.0780283699177744
GSIEIDIPVPK	11	Unmodified	_GSIEIDIPVPK_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000464601.5_1_3:182733228-182740387:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.8087768554688	2	584.334621	1166.65469	0.30784	0.00017988	-3.0599	-0.001788	-2.7521	-0.0016081	584.3321397381793	62.156	0.50536	62.148	61.878	62.384	-0.0085526					30	18	3	0	0	0	0.32813	1	15319	15319		12.175	2.1008	1	178950			11733	1103	6656	6656	14934	14934					0.0780283699177744
GSIQPHGVFFR	11	Unmodified	_GSIQPHGVFFR_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8763427734375	3	415.556007	1243.64619	0.44848	0.00018637	0.19426	8.0724E-05	0.64273	0.00026709	415.89048888802495	41.838	0.31219	41.935	41.87	42.183	0.096622					13	10	2	0	0	0	0.33122	1	9080	9080		7.0371	1.7402	1	520870			11734	4833	6657	6657	14935	14935					0.034113278657969204
GSISRVFAR	9	Unmodified	_GSISRVFAR_					0	0	0		ENSG00000189337|ENST00000376030|KAZN;nc|ENSG00000189337|Q674X7-4|KAZN;nc|ENSG00000189337|Q674X7-3|KAZN;nc|ENSG00000189337|Q674X7-2|KAZN;ENST00000491547.1_1_1:15389965-15392290:+|nuORF	ENSG00000189337|ENST00000376030|KAZN	ENSG00000189337|ENST00000376030|KAZN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.5884094238281	2	496.785433	991.556313	0.43396	0.00021558	0.17805	8.8452E-05	0.612	0.00030403	496.7854719065658	28.86	0.50226	28.86	28.64	29.142	0					30	17	2	0	0	0	0.24289	1	5115	5115		18.146	4.2403	1	225920			11735	7812	6658	6658	14936	14936					0.0601969825723927
GSISTLKFQRT	11	Unmodified	_GSISTLKFQRT_					0	0	0		nc|ENSG00000211707|A0A0A6YYK4|TRBV7-1	nc|ENSG00000211707|A0A0A6YYK4|TRBV7-1	nc|ENSG00000211707|A0A0A6YYK4|TRBV7-1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2351379394531	3	413.234822	1236.68264	0.071863	2.9696E-05	-0.1987	-8.211E-05	-0.12684	-5.2414E-05	413.23471687259524	36.517	0.7826	36.517	36.256	37.039	0					66	27	3	0	0	0	0.40928	1	7390	7390		10.016	3.7112	1	1051800			11736	12924	6659	6659	14937	14937					0.07376159971840934
GSIYDNILN	9	Unmodified	_GSIYDNILN_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7541198730469	2	504.753464	1007.49238	0.25243	0.00012742	1.2055	0.00060846	1.4579	0.00073588	504.75410378823824	19.947	0.53014	19.947	19.627	20.157	0					38	19	3	0	0	0	0.23767	1	2409	2409		18.146	1.0335	1	144440	+		11737	16382	6660	6660	14938	14938					-0.011071266903854848
GSIYDNILN	9	Unmodified	_GSIYDNILN_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7543640136719	2	504.753464	1007.49238	0.52802	0.00026652	0.72129	0.00036407	1.2493	0.00063059	504.753896099538	20.03	0.57547	19.975	19.624	20.199	-0.055693					45	20	3	0	0	0	0.23767	1	2432	2432		18.146	1.0335	1	134500	+		11738	16382	6660	6660	14939	14939					-0.011071266903854848
GSIYDNILN	9	Unmodified	_GSIYDNILN_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	504.753464	1007.49238	0.52802	0.00026652	0.72129	0.00036407	1.2493	0.00063059	504.753896099538	20.03	0.57547	19.975	19.624	20.199	-0.055693	0.017586	-0.00014352	NaN	18.146	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134500	+		11739	16382	6660	6660							-0.011071266903854848
GSKYLNMQLL	10	Unmodified	_GSKYLNMQLL_					0	0	0		ENST00000396591.7_1_5:68396752-68400539:+|nuORF;ENST00000380860.8_1_5:68400362-68400539:+|nuORF	ENST00000396591.7_1_5:68396752-68400539:+|nuORF	ENST00000396591.7_1_5:68396752-68400539:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.289794921875	2	583.815541	1165.61653	0.14075	8.2173E-05	0.94725	0.00055302	1.088	0.00063519	583.8162165628747	66.912	0.52187	66.899	66.662	67.184	-0.013596					27	18	2	0	0	0	0.31581	1	16725	16725		11.495	2.1473	1	267700			11740	10120	6661	6661	14940	14940					0.040346278054357754
GSLAEILLK	9	Unmodified	_GSLAEILLK_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000530037.1_1_11:9445350-9446836:+|nuORF;ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000205339|ENST00000379719|IPO7;ENSG00000133704|ENST00000256079|IPO8	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.29412841796875	2	472.294768	942.574983	0.37412	0.0001767	-0.46402	-0.00021916	-0.089902	-4.246E-05	472.29449300011044	60.875	0.5995	60.875	60.607	61.207	0					45	21	3	0	0	0	0.0054984	1	14945	14945		86.332	30.155	1	1834500			11741	8284;3725	6662	6662	14941	14941					0.1013981510842541
GSLAEILLK	9	Unmodified	_GSLAEILLK_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000530037.1_1_11:9445350-9446836:+|nuORF;ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000205339|ENST00000379719|IPO7;ENSG00000133704|ENST00000256079|IPO8	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.29461669921875	2	472.294768	942.574983	0.42503	0.00020074	-0.27306	-0.00012897	0.15197	7.1774E-05	472.29453647945894	60.829	0.74659	60.926	60.608	61.354	0.096989					46	26	3	0	0	0	0.0054984	1	14933	14933		86.332	30.155	1	1817000			11742	8284;3725	6662	6662	14942	14942					0.1013981510842541
GSLAEILLK	9	Unmodified	_GSLAEILLK_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000530037.1_1_11:9445350-9446836:+|nuORF;ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000205339|ENST00000379719|IPO7;ENSG00000133704|ENST00000256079|IPO8	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2950439453125	2	472.294768	942.574983	0.52422	0.00024759	-0.4006	-0.0001892	0.12362	5.8385E-05	472.2945250844554	60.882	0.48096	60.872	60.596	61.077	-0.0094566					39	17	3	0	0	0	0.0054984	1	14923	14923		86.332	30.155	1	1838300			11743	8284;3725	6662	6662	14943	14943					0.1013981510842541
GSLAQYYFSTC	11	Unmodified	_GSLAQYYFSTC_					0	0	0			REV__ENST00000576017.1_1_17:7306387-7306570:-|nuORF	REV__ENST00000576017.1_1_17:7306387-7306570:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.28515625	2	620.271164	1238.52777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.485	1	76.454	75.954	76.954	-0.031487								0	0	0	0.36517	1	19687	19687		4.897	0	1		+		11744	18994	6663	6663	14944	14944					-0.08194832224899073
GSLDPQTDSSV	11	Unmodified	_GSLDPQTDSSV_					0	0	0		nc|ENSG00000150281|Q16619-2|CTF1	nc|ENSG00000150281|Q16619-2|CTF1	nc|ENSG00000150281|Q16619-2|CTF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.2536010742188	2	553.254025	1104.4935	0.31899	0.00017648	0.92043	0.00050923	1.2394	0.00068571	553.2547399134908	31.58	0.8154	31.621	31.419	32.234	0.040991					46	28	3	0	0	0	0.46475	1	5905	5905		2.7352	0.67545	1	915550			11745	12757	6664	6664	14945	14945					-0.05456957112141936
GSLDQVLKK	9	Unmodified	_GSLDQVLKK_					0	0	0		ENST00000425818.2_1_15:66679685-66737158:+|nuORF;ENSG00000169032|ENST00000307102|MAP2K1	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.29541015625	2	494.295299	986.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.514	1	29.526	29.026	30.026	0.012266								0	0	0	0.034764	1	5291	5291		65.474	13.205	1				11746	6323	6665	6665	14946	14946					0.08222029477337855
GSLDQVLKK	9	Unmodified	_GSLDQVLKK_					0	0	0		ENST00000425818.2_1_15:66679685-66737158:+|nuORF;ENSG00000169032|ENST00000307102|MAP2K1	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	ENST00000425818.2_1_15:66679685-66737158:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2953796386719	2	494.295299	986.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.54	1	29.554	29.054	30.054	0.013474								0	0	0	0.015736	1	5293	5293		71.708	10.35	1				11747	6323	6665	6665	14947	14947					0.08222029477337855
GSLEKSVTK	9	Unmodified	_GSLEKSVTK_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;INTS4|p.P209Hfs*8|1|0.34|ENSG00000149262|chr11:77960984-77960984|G/-|frameshift_variant;nc|ENSG00000149262|Q96HW7-2|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7711181640625	2	474.771657	947.528761	0.001172	5.5645E-07	-0.46855	-0.00022245	-0.46738	-0.0002219	474.77144488864934	14.844	0.60883	14.735	14.484	15.093	-0.10981					47	21	3	0	0	0	0.014058	1	848	848		73.196	15.947	1	408390			11748	4855	6666	6666	14948	14948					0.05289750206327426
GSLFLQTPK	9	Unmodified	_GSLFLQTPK_					0	0	0		ENSG00000111716|ENST00000350669|LDHB;ENST00000470280.1_1_12:21796836-21807485:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.78472900390625	2	495.784567	989.554582	0.67369	0.000334	-0.11496	-5.6997E-05	0.55872	0.00027701	495.78452494365035	45.533	1.0726	45.533	45.121	46.194	0					119	38	4	0	0	0	9.5135E-08	4	10181	10134;10181;10223;10338		176.43	90.785	1	7338200			11749	2384	6667	6667	14949;14950;14951;14952	14950					0.0593864444861083
GSLFLQTPK	9	Unmodified	_GSLFLQTPK_					0	0	0		ENSG00000111716|ENST00000350669|LDHB;ENST00000470280.1_1_12:21796836-21807485:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7847595214844	2	495.784567	989.554582	0.64942	0.00032197	-0.018524	-9.1837E-06	0.6309	0.00031279	495.7845723049612	45.397	1.1523	45.457	44.97	46.123	0.059834					128	40	5	0	0	0	9.5135E-08	2	10134	10134;10177		176.43	100.67	1	8044700			11750	2384	6667	6667	14953;14954	14953					0.0593864444861083
GSLFLQTPK	9	Unmodified	_GSLFLQTPK_					0	0	0		ENSG00000111716|ENST00000350669|LDHB;ENST00000470280.1_1_12:21796836-21807485:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.78485107421875	2	495.784567	989.554582	0.4784	0.00023718	0.16575	8.2177E-05	0.64415	0.00031936	495.7846632438826	45.381	1.1414	45.446	45.032	46.174	0.065048					142	41	5	0	0	0	9.5135E-08	2	10122	10122;10171		176.43	96.831	1	8185600			11751	2384	6667	6667	14955;14956	14955					0.0593864444861083
GSLFLRTPK	9	Unmodified	_GSLFLRTPK_					0	0	0		ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-4|LDHA;nc|ENSG00000134333|P00338-2|LDHA;ENST00000437325.2_1_1:235901419-235901638:+|nuORF;ENST00000494573.6_1_11:18418389-18421097:+|nuORF	ENSG00000134333|ENST00000422447|LDHA	ENSG00000134333|ENST00000422447|LDHA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.80535888671875	2	509.805834	1017.59712	-1.067	-0.00054395	0.25878	0.00013193	-0.80821	-0.00041203	509.8062567515984	34.879	1.5252	34.879	34.22	35.745	0					182	54	5	0	0	0	0.00054549	4	6883	6837;6883;6926;6978		128.57	75.169	1	18823000			11752	3775	6668	6668	14957;14958;14959;14960	14958					0.08902039576855714
GSLFLRTPK	9	Unmodified	_GSLFLRTPK_					0	0	0		ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-4|LDHA;nc|ENSG00000134333|P00338-2|LDHA;ENST00000437325.2_1_1:235901419-235901638:+|nuORF;ENST00000494573.6_1_11:18418389-18421097:+|nuORF	ENSG00000134333|ENST00000422447|LDHA	ENSG00000134333|ENST00000422447|LDHA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2288513183594	2	509.805834	1017.59712	0.43657	0.00022256	-0.49201	-0.00025083	-0.055439	-2.8263E-05	509.8057181745821	35.84	0.62099	35.84	35.635	36.256	0					26	18	2	0	0	0	0.23216	1	7206	7206		22.658	1.1211	1	222010			11753	3775	6668	6668	14961	14961					0.08902039576855714
GSLFLRTPK	9	Unmodified	_GSLFLRTPK_					0	0	0		ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-4|LDHA;nc|ENSG00000134333|P00338-2|LDHA;ENST00000437325.2_1_1:235901419-235901638:+|nuORF;ENST00000494573.6_1_11:18418389-18421097:+|nuORF	ENSG00000134333|ENST00000422447|LDHA	ENSG00000134333|ENST00000422447|LDHA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8056945800781	2	509.805834	1017.59712	-1.2563	-0.00064047	0.3759	0.00019163	-0.88041	-0.00044884	509.806319409049	34.784	1.7535	34.859	34.383	36.136	0.075306					182	63	5	0	0	0	0.00010651	4	6897	6803;6849;6897;6942		139.78	78.18	1	19882000			11754	3775	6668	6668	14962;14963;14964;14965	14964					0.08902039576855714
GSLFLRTPK	9	Unmodified	_GSLFLRTPK_					0	0	0		ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-4|LDHA;nc|ENSG00000134333|P00338-2|LDHA;ENST00000437325.2_1_1:235901419-235901638:+|nuORF;ENST00000494573.6_1_11:18418389-18421097:+|nuORF	ENSG00000134333|ENST00000422447|LDHA	ENSG00000134333|ENST00000422447|LDHA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8050537109375	2	509.805834	1017.59712	-0.57041	-0.0002908	-0.22873	-0.00011661	-0.79914	-0.0004074	509.8060591963305	34.747	1.5833	34.825	34.39	35.974	0.077377					183	56	5	0	0	0	0.00024732	5	6827	6784;6827;6869;6913;6955		132.38	70.778	1	20607000			11755	3775	6668	6668	14966;14967;14968;14969;14970	14967					0.08902039576855714
GSLFLRTPK	9	Unmodified	_GSLFLRTPK_					0	0	0		ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-4|LDHA;nc|ENSG00000134333|P00338-2|LDHA;ENST00000437325.2_1_1:235901419-235901638:+|nuORF;ENST00000494573.6_1_11:18418389-18421097:+|nuORF	ENSG00000134333|ENST00000422447|LDHA	ENSG00000134333|ENST00000422447|LDHA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	509.805834	1017.59712	0.47622	0.00024278	-0.8303	-0.00042329	-0.35408	-0.00018051	509.80554148241697	36.013	0.21318	36.099	35.982	36.196	0.086246	0.12932	-0.00011534	NaN	27.223	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100660			11756	3775	6668	6668							0.08902039576855714
GSLGGQINK	9	Unmodified	_GSLGGQINK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.8948059082031	2	437.243067	872.47158	-0.096463	-4.2178E-05	0.38107	0.00016662	0.28461	0.00012444	437.2431012614425	19.8	0.64358	19.8	19.401	20.045	0					36	22	2	0	0	0	0.12329	1	2314	2314		49.554	9.6046	1	292990			11757	8602	6669	6669	14971	14971					0.03024327720618203
GSLGGQINK	9	Unmodified	_GSLGGQINK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.89471435546875	2	437.243067	872.47158	0.096373	4.2139E-05	-0.06578	-2.8762E-05	0.030593	1.3377E-05	437.2429011080758	19.924	0.58197	19.808	19.544	20.126	-0.11592					34	19	2	0	0	0	0.042824	1	2373	2373		75.761	10.526	1	309870			11758	8602	6669	6669	14972	14972					0.03024327720618203
GSLGGQINK	9	Unmodified	_GSLGGQINK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.8947448730469	2	437.243067	872.47158	0.17016	7.4402E-05	0.021803	9.5333E-06	0.19196	8.3935E-05	437.24293409131434	19.86	0.51778	19.805	19.544	20.062	-0.055693					34	18	2	0	0	0	0.090256	1	2339	2339		57.722	3.8892	1	340960			11759	8602	6669	6669	14973	14973					0.03024327720618203
GSLIVHEALYF	11	Unmodified	_GSLIVHEALYF_					0	0	0		MSMO1|p.L71Yfs*8|1|0.33|ENSG00000052802|chr4:165333578-165333578|T/-|frameshift_variant;ENSG00000052802|ENST00000261507|MSMO1	MSMO1|p.L71Yfs*8|1|0.33|ENSG00000052802|chr4:165333578-165333578|T/-|frameshift_variant	MSMO1|p.L71Yfs*8|1|0.33|ENSG00000052802|chr4:165333578-165333578|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.8347778320312	2	624.834788	1247.65502	0.45828	0.00028635	-0.65694	-0.00041048	-0.19866	-0.00012413	624.8342015455752	79.379	0.5062	79.379	79.184	79.69	0					38	19	3	0	0	0	0.46277	1	20608	20608		2.9952	1.3426	1	377730			11760	674	6670	6670	14974	14974					0.04110256711601323
GSLKPHDYPK	10	Unmodified	_GSLKPHDYPK_					0	0	0		nc|ENSG00000107537|O14832-2|PHYH;ENSG00000107537|ENST00000263038|PHYH	nc|ENSG00000107537|O14832-2|PHYH	nc|ENSG00000107537|O14832-2|PHYH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.3037719726562	2	571.303655	1140.59276	0.061091	3.4901E-05	0.041487	2.3702E-05	0.10258	5.8603E-05	571.3035781136858	16.024	0.42646	16.024	15.816	16.242	0					28	14	3	0	0	0	0.33594	1	1200	1200		15.248	3.0078	1	82596			11761	2130	6671	6671	14975	14975					0.028085303632678915
GSLKPHDYPK	10	Unmodified	_GSLKPHDYPK_					0	0	0		nc|ENSG00000107537|O14832-2|PHYH;ENSG00000107537|ENST00000263038|PHYH	nc|ENSG00000107537|O14832-2|PHYH	nc|ENSG00000107537|O14832-2|PHYH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.3038940429688	2	571.303655	1140.59276	0.15372	8.7821E-05	-0.24252	-0.00013855	-0.088804	-5.0734E-05	571.3034538665457	16.125	0.43598	16.011	15.811	16.247	-0.11434					30	14	3	0	0	0	0.3001	1	1246	1246		20.415	8.1739	1	69999			11762	2130	6671	6671	14976	14976					0.028085303632678915
GSLKPHDYPK	10	Unmodified	_GSLKPHDYPK_					0	0	0		nc|ENSG00000107537|O14832-2|PHYH;ENSG00000107537|ENST00000263038|PHYH	nc|ENSG00000107537|O14832-2|PHYH	nc|ENSG00000107537|O14832-2|PHYH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3037109375	2	571.303655	1140.59276	0.1024	5.8499E-05	0.10501	5.9995E-05	0.20741	0.00011849	571.3035483221638	16.026	0.39599	15.963	15.781	16.177	-0.062533					30	13	3	0	0	0	0.33594	1	1228	1228		15.248	3.0078	1	87483			11763	2130	6671	6671	14977	14977					0.028085303632678915
GSLKQFLKK	9	Unmodified	_GSLKQFLKK_					0	0	0		ENSG00000115216|ENST00000379852|NRBP1;ENST00000493768.5_1_2:27657358-27657630:+|nuORF;ENST00000529747.5_1_8:144921838-144922003:-|nuORF;ENST00000493746.1_1_2:27657358-27658741:+|nuORF;nc|ENSG00000185189|Q9NSY0-5|NRBP2;ENST00000533093.5_1_8:144921838-144923057:-|nuORF;ENSG00000185189|ENST00000442628|NRBP2	ENSG00000115216|ENST00000379852|NRBP1	ENSG00000115216|ENST00000379852|NRBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.829345703125	2	524.829309	1047.64407	0.44423	0.00023315	-0.18407	-9.6607E-05	0.26016	0.00013654	524.8290745645448	25.1	0.71672	25.1	24.817	25.533	0					52	24	3	0	0	0	0.074552	1	3937	3937		43.772	7.2662	1	267270			11764	2618	6672	6672	14978	14978					0.12214899127980061
GSLKQFLKK	9	Unmodified	_GSLKQFLKK_					0	0	0		ENSG00000115216|ENST00000379852|NRBP1;ENST00000493768.5_1_2:27657358-27657630:+|nuORF;ENST00000529747.5_1_8:144921838-144922003:-|nuORF;ENST00000493746.1_1_2:27657358-27658741:+|nuORF;nc|ENSG00000185189|Q9NSY0-5|NRBP2;ENST00000533093.5_1_8:144921838-144923057:-|nuORF;ENSG00000185189|ENST00000442628|NRBP2	ENSG00000115216|ENST00000379852|NRBP1	ENSG00000115216|ENST00000379852|NRBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.829345703125	2	524.829309	1047.64407	0.079639	4.1797E-05	0.20003	0.00010498	0.27966	0.00014678	524.8292779152503	25.175	0.67922	25.144	24.89	25.57	-0.03141					51	23	3	0	0	0	0.088443	1	3974	3974		39.95	7.164	1	315230			11765	2618	6672	6672	14979	14979					0.12214899127980061
GSLLGRDALTL	11	Unmodified	_GSLLGRDALTL_					0	0	0			REV__ENST00000531870.5_1_11:33183268-33211605:+|nuORF	REV__ENST00000531870.5_1_11:33183268-33211605:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3252563476562	2	558.324588	1114.63462	0.36624	0.00020448	0.66408	0.00037077	1.0303	0.00057526	558.3246429415933	89.975	0.79398	89.975	89.69	90.484	0					163	66	3	0	0	0	0.44192	1	23787	23787		5.7319	0.43497	1	381520	+		11766	22026	6673	6673	14980	14980					0.08189086051788763
GSLNVTLEH	9	Unmodified	_GSLNVTLEH_					0	0	0		DNMT3A|p.E616Dfs*35|1|0.15|ENSG00000119772|chr2:25244158-25244158|T/-|frameshift_variant;nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;DNMT3A|p.S839Pfs*2|1|0.35|ENSG00000119772|chr2:25235789-25235789|A/-|frameshift_variant;ENSG00000119772|ENST00000321117|DNMT3A	DNMT3A|p.E616Dfs*35|1|0.15|ENSG00000119772|chr2:25244158-25244158|T/-|frameshift_variant	DNMT3A|p.E616Dfs*35|1|0.15|ENSG00000119772|chr2:25244158-25244158|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.2662658691406	2	485.253631	968.49271	0.30243	0.00014675	2.1017	0.0010198	2.4041	0.0011666	485.254774537468	37.879	0.70901	37.97	37.555	38.264	0.090881					56	25	3	0	0	0	0.053988	1	7859	7859		51.415	20.147	1	283230			11767	271	6674	6674	14981	14981					0.0072029302948521945
GSLPGGSVISR	11	Unmodified	_GSLPGGSVISR_					0	0	0		ENST00000490764.5_1_2:234327938-234366271:+|nuORF;nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD	ENST00000490764.5_1_2:234327938-234366271:+|nuORF	ENST00000490764.5_1_2:234327938-234366271:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2882080078125	2	515.288005	1028.56146	0.6573	0.0003387	-0.45514	-0.00023453	0.20216	0.00010417	515.2877843072596	37.123	0.64105	37.123	36.756	37.397	0					51	22	3	0	0	0	0.23423	1	7615	7615		42.068	22.442	1	611870			11768	1076	6675	6675	14982	14982					0.04831957329179204
GSLPGGSVISR	11	Unmodified	_GSLPGGSVISR_					0	0	0		ENST00000490764.5_1_2:234327938-234366271:+|nuORF;nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD	ENST00000490764.5_1_2:234327938-234366271:+|nuORF	ENST00000490764.5_1_2:234327938-234366271:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2880249023438	2	515.288005	1028.56146	0.33115	0.00017064	-0.10085	-5.1965E-05	0.2303	0.00011867	515.2879120404677	36.986	0.76358	37.074	36.734	37.498	0.08741					56	27	3	0	0	0	0.078698	1	7584	7584		44.945	14.241	1	578250			11769	1076	6675	6675	14983	14983					0.04831957329179204
GSLPGGSVISR	11	Unmodified	_GSLPGGSVISR_					0	0	0		ENST00000490764.5_1_2:234327938-234366271:+|nuORF;nc|ENSG00000077044|Q16760-2|DGKD;ENSG00000077044|ENST00000264057|DGKD	ENST00000490764.5_1_2:234327938-234366271:+|nuORF	ENST00000490764.5_1_2:234327938-234366271:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2879638671875	2	515.288005	1028.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.997	1	37.09	36.59	37.59	0.093018								0	0	0	0.06907	1	7566	7566		50.13	18.093	1				11770	1076	6675	6675	14984	14984					0.04831957329179204
GSLRDSALFVK	11	Unmodified	_GSLRDSALFVK_					0	0	0		ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.828857421875	2	596.837862	1191.66117	0.13732	8.1956E-05	1.9455	0.0011611	2.0828	0.0012431	596.8389713914454	39.655	0.45638	39.655	39.402	39.858	0					26	16	2	0	0	0	0.32344	1	8317	8317		19.626	4.3775	1	314860			11771	7134	6676	6676	14985	14985					0.073007749431099
GSLRDSALFVK	11	Unmodified	_GSLRDSALFVK_					0	0	0		ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.8396606445312	2	596.837862	1191.66117	0.38654	0.0002307	2.1164	0.0012631	2.5029	0.0014938	596.8392025637312	39.431	0.33017	39.523	39.332	39.662	0.09267					25	11	3	0	0	0	0.26238	1	8325	8325		39.923	14.932	1	377050			11772	7134	6676	6676	14986	14986					0.073007749431099
GSLRDSALFVK	11	Unmodified	_GSLRDSALFVK_					0	0	0		ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.827392578125	2	596.837862	1191.66117	0.413	0.00024649	1.8596	0.0011099	2.2726	0.0013564	597.3405674164119	39.379	0.36443	39.479	39.372	39.736	0.099403					23	12	3	0	0	0	0.30314	1	8295	8295		28.181	13.776	1	274870			11773	7134	6676	6676	14987	14987					0.073007749431099
GSLRPFVQK	9	Unmodified	_GSLRPFVQK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.3034057617188	2	516.303458	1030.59236	0.26443	0.00013653	0.42678	0.00022035	0.69121	0.00035688	516.303821161902	26.803	1.1088	26.803	26.215	27.324	0					103	38	4	0	0	0	0.0098873	2	4507	4464;4507		79.596	70.332	1	1551000			11774	2429	6677	6677	14988;14989	14989					0.07829155434069435
GSLRPFVQK	9	Unmodified	_GSLRPFVQK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.3038330078125	2	516.303458	1030.59236	0.21088	0.00010888	0.63018	0.00032536	0.84106	0.00043424	516.3038568057622	26.812	1.3354	26.79	26.224	27.559	-0.02141					119	46	4	0	0	0	0.0098873	2	4480	4480;4525		79.596	30.382	1	1593400			11775	2429	6677	6677	14990;14991	14990					0.07829155434069435
GSLRPFVQK	9	Unmodified	_GSLRPFVQK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.3037719726562	2	516.303458	1030.59236	0.35591	0.00018376	0.49022	0.0002531	0.84613	0.00043686	516.3037456573924	26.837	1.0983	26.825	26.309	27.407	-0.011562					110	38	5	0	0	0	0.0046246	3	4484	4436;4484;4528		89.401	30.722	1	1465800			11776	2429	6677	6677	14992;14993;14994	14993					0.07829155434069435
GSLSHPKEH	9	Unmodified	_GSLSHPKEH_					0	0	0		nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-8|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2518310546875	2	496.251423	990.488293	0.33324	0.00016537	-0.029484	-1.4632E-05	0.30375	0.00015074	496.25120126642304	24.35	0.78769	24.35	24.029	24.817	0					57	26	3	0	0	0	0.31038	1	3777	3777		7.2892	0.56607	1	139810			11777	12777	6678	6678	14995	14995					-0.007331713934263462
GSLSYLNVTRK	11	Unmodified	_GSLSYLNVTRK_					0	0	0		ENSG00000117984|ENST00000236671|CTSD;ENST00000497544.2_2_11:1775127-1776230:-|nuORF	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2348327636719	3	413.234822	1236.68264	0.071863	2.9696E-05	-0.1987	-8.211E-05	-0.12684	-5.2414E-05	413.23471687259524	36.517	0.7826	36.517	36.256	37.039	0					66	27	3	0	0	0	0.098551	1	7439	7439		40.317	9.9032	1	1051800			11778	2812	6679	6679	14996	14996					0.07376159971818197
GSLSYLNVTRK	11	Unmodified	_GSLSYLNVTRK_					0	0	0		ENSG00000117984|ENST00000236671|CTSD;ENST00000497544.2_2_11:1775127-1776230:-|nuORF	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.3485107421875	2	619.348594	1236.68264	0.35639	0.00022073	0.14978	9.2765E-05	0.50617	0.00031349	619.3486431558933	36.518	0.42921	36.518	36.358	36.787	0					30	14	3	0	0	0	0.028371	1	7452	7452		55.249	32.591	1	311890			11779	2812	6679	6679	14997	14997					0.07376159971818197
GSLSYLNVTRK	11	Unmodified	_GSLSYLNVTRK_					0	0	0		ENSG00000117984|ENST00000236671|CTSD;ENST00000497544.2_2_11:1775127-1776230:-|nuORF	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2344055175781	3	413.234822	1236.68264	0.40759	0.00016843	-0.51981	-0.0002148	-0.11222	-4.6374E-05	413.23458989183786	36.375	0.7415	36.458	36.233	36.975	0.082355					69	26	4	0	0	0	0.16139	2	7368	7368;7414		34.674	13.007	1	1168000			11780	2812	6679	6679	14998;14999	14998					0.07376159971818197
GSLSYLNVTRK	11	Unmodified	_GSLSYLNVTRK_					0	0	0		ENSG00000117984|ENST00000236671|CTSD;ENST00000497544.2_2_11:1775127-1776230:-|nuORF	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.3490600585938	2	619.348594	1236.68264	0.26992	0.00016717	0.21752	0.00013472	0.48744	0.00030189	619.3487128299078	36.345	0.49769	36.428	36.259	36.757	0.082355					32	17	3	0	0	0	0.069084	1	7417	7417		49.742	31.369	1	367570			11781	2812	6679	6679	15000	15000					0.07376159971818197
GSLSYLNVTRK	11	Unmodified	_GSLSYLNVTRK_					0	0	0		ENSG00000117984|ENST00000236671|CTSD;ENST00000497544.2_2_11:1775127-1776230:-|nuORF	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.3486328125	2	619.348594	1236.68264	0.61701	0.00038215	-0.1364	-8.4479E-05	0.48061	0.00029767	619.3484766939195	36.344	0.51094	36.43	36.196	36.707	0.08625					34	17	3	0	0	0	0.098551	1	7398	7398		41.347	18.689	1	364600			11782	2812	6679	6679	15001	15001					0.07376159971818197
GSLSYLNVTRK	11	Unmodified	_GSLSYLNVTRK_					0	0	0		ENSG00000117984|ENST00000236671|CTSD;ENST00000497544.2_2_11:1775127-1776230:-|nuORF	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	413.234822	1236.68264	0.61916	0.00025586	-0.74182	-0.00030655	-0.12266	-5.0687E-05	413.23445295918833	36.386	0.93936	36.472	36.14	37.08	0.086246	-0.010217	-0.00025556	NaN	40.317	72	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1022700			11783	2812	6679	6679							0.07376159971818197
GSLVALVPK	9	Unmodified	_GSLVALVPK_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3;ENST00000493546.1_1_X:153697446-153699024:+|nuORF	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.2724304199219	2	442.284203	882.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.141	1	49.141	48.641	49.641	0								0	0	0	0.21353	1	11299	11299		18.146	2.2992	1				11784	3524	6680	6680	15002	15002					0.10787849799555715
GSMEPAFHR	9	Oxidation (M)	_GSM(Oxidation (M))EPAFHR_		GSM(1)EPAFHR		GSM(56)EPAFHR	0	0	1		nc|ENSG00000140612|P67812-2|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;nc|ENSG00000226098|P0C7V7|SEC11B;nc|ENSG00000140612|P67812-3|SEC11A;ENSG00000166562|ENST00000587834|SEC11C;ENST00000585864.1_1_18:56807180-56819918:+|nuORF	nc|ENSG00000140612|P67812-2|SEC11A;ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.237548828125	2	524.237458	1046.46036	0.28352	0.00014863	-0.45377	-0.00023788	-0.17025	-8.9253E-05	524.2372739313649	19.2	0.62549	19.2	18.895	19.521	0					56	21	3	0	0	0	0.04299	1	2157	2157		55.503	44.679	1	144330			11785	6096;4324	6681	6681	15003	15003		552			-0.06100817645187817
GSMEPAFHR	9	Oxidation (M)	_GSM(Oxidation (M))EPAFHR_		GSM(1)EPAFHR		GSM(42)EPAFHR	0	0	1		nc|ENSG00000140612|P67812-2|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;nc|ENSG00000226098|P0C7V7|SEC11B;nc|ENSG00000140612|P67812-3|SEC11A;ENSG00000166562|ENST00000587834|SEC11C;ENST00000585864.1_1_18:56807180-56819918:+|nuORF	nc|ENSG00000140612|P67812-2|SEC11A;ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2372436523438	2	524.237458	1046.46036	0.34475	0.00018073	-0.24811	-0.00013007	0.09664	5.0662E-05	524.2372075279043	19.316	0.72253	19.2	18.919	19.642	-0.11592					56	24	3	0	0	0	0.07944	1	2213	2213		41.956	33.362	1	175580			11786	6096;4324	6681	6681	15004	15004		552			-0.06100817645187817
GSMGSFSEK	9	Oxidation (M)	_GSM(Oxidation (M))GSFSEK_		GSM(1)GSFSEK		GSM(48)GSFSEK	0	0	1		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.202392578125	2	473.20275	944.390947	-0.18457	-8.7341E-05	-0.099689	-4.7173E-05	-0.28426	-0.00013451	473.20253574384594	15.012	0.41356	15.012	14.819	15.232	0					28	14	3	0	0	0	0.064268	1	898	898		47.594	24.858	1	213410			11787	3320	6682	6682	15005	15005		419			-0.08347321384587758
GSMGYSAIH	9	Unmodified	_GSMGYSAIH_					0	0	0			REV__ENSG00000184860|ENST00000328945|SDR42E1	REV__ENSG00000184860|ENST00000328945|SDR42E1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.7079772949219	2	461.708002	921.401452	0.068962	3.184E-05	-0.0027117	-1.252E-06	0.066251	3.0588E-05	461.7081201917938	70.841	1.1074	70.902	70.327	71.434	0.060783					82	39	3	0	0	0	0.30623	2	17914	17914;17963		7.9102	7.9102	1	659940	+		11788	18335	6683	6683	15006;15007	15006					-0.062392939395067515
GSMKVQISSQN	11	Unmodified	_GSMKVQISSQN_					0	0	0		nc|ENSG00000115183|Q9C0D5-2|TANC1;TANC1|p.S1845Vfs*14|1|0.11|ENSG00000115183|chr2:159230958-159230959|-/GT|frameshift_variant;ENSG00000115183|ENST00000263635|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF	nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8082885742188	2	589.795337	1177.57612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.882	1	36.975	36.475	37.475	0.093018								0	0	0	0.25307	1	7531	7531		27.223	3.4335	1				11789	2613	6684	6684	15008	15008					-0.005563385849654878
GSMTVVTVK	9	Oxidation (M)	_GSM(Oxidation (M))TVVTVK_		GSM(1)TVVTVK		GSM(40)TVVTVK	0	0	1		ENSG00000001461|ENST00000374399|NIPAL3;nc|ENSG00000001461|Q6P499-2|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.2401123046875	2	469.254785	936.495018	-0.05523	-2.5917E-05	0.010801	5.0683E-06	-0.044429	-2.0849E-05	469.25463793676073	22.639	0.49035	22.551	22.245	22.736	-0.087608					32	17	2	0	0	0	0.086462	1	3190	3190		40.239	17.503	1	95825			11790	287	6685	6685	15009	15009		22			0.02423005442926751
GSMVSEIPEK	10	Oxidation (M)	_GSM(Oxidation (M))VSEIPEK_		GSM(1)VSEIPEK		GSM(79)VSEIPEK	0	0	1		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;nc|ENSG00000167165|P19224-2|UGT1A6;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7;ENSG00000167165|ENST00000305139|UGT1A6;ENSG00000241635|ENST00000305208|UGT1A1;nc|ENSG00000288705|P35504|UGT1A5;ENSG00000244474|ENST00000373409|UGT1A4;nc|ENSG00000288702|P35503|UGT1A3	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000167165|ENST00000305139|UGT1A6;ENSG00000241635|ENST00000305208|UGT1A1;nc|ENSG00000288705|P35504|UGT1A5;nc|ENSG00000288702|P35503|UGT1A3	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.7657470703125	2	546.765714	1091.51688	0.31004	0.00016952	-0.027943	-1.5278E-05	0.2821	0.00015424	546.7657592498575	26.307	1.0531	26.307	25.9	26.953	0					78	36	4	0	0	0	0.012937	4	4255	4255;4303;4354;4407		79.427	27.797	1	476380			11791	8529;12963;8544;8548;8571;13008;6154;8535	6686	6686	15010;15011;15012;15013	15010		720			-0.025222345991551265
GSMVSEIPEK	10	Oxidation (M)	_GSM(Oxidation (M))VSEIPEK_		GSM(1)VSEIPEK		GSM(86)VSEIPEK	0	0	1		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;nc|ENSG00000167165|P19224-2|UGT1A6;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7;ENSG00000167165|ENST00000305139|UGT1A6;ENSG00000241635|ENST00000305208|UGT1A1;nc|ENSG00000288705|P35504|UGT1A5;ENSG00000244474|ENST00000373409|UGT1A4;nc|ENSG00000288702|P35503|UGT1A3	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000167165|ENST00000305139|UGT1A6;ENSG00000241635|ENST00000305208|UGT1A1;nc|ENSG00000288705|P35504|UGT1A5;nc|ENSG00000288702|P35503|UGT1A3	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.7660522460938	2	546.765714	1091.51688	0.42118	0.00023029	0.056462	3.0872E-05	0.47765	0.00026116	546.7657309774338	26.199	1.0353	26.161	25.902	26.938	-0.038671					80	36	3	0	0	0	0.0071242	4	4353	4247;4296;4353;4398		85.764	34.135	1	477820			11792	8529;12963;8544;8548;8571;13008;6154;8535	6686	6686	15014;15015;15016;15017	15016		720			-0.025222345991551265
GSMVSEIPEK	10	Oxidation (M)	_GSM(Oxidation (M))VSEIPEK_		GSM(1)VSEIPEK		GSM(76)VSEIPEK	0	0	1		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;nc|ENSG00000167165|P19224-2|UGT1A6;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7;ENSG00000167165|ENST00000305139|UGT1A6;ENSG00000241635|ENST00000305208|UGT1A1;nc|ENSG00000288705|P35504|UGT1A5;ENSG00000244474|ENST00000373409|UGT1A4;nc|ENSG00000288702|P35503|UGT1A3	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000167165|ENST00000305139|UGT1A6;ENSG00000241635|ENST00000305208|UGT1A1;nc|ENSG00000288705|P35504|UGT1A5;nc|ENSG00000288702|P35503|UGT1A3	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7656860351562	2	546.765714	1091.51688	0.61009	0.00033358	-0.17455	-9.5435E-05	0.43555	0.00023814	546.7655964504623	26.4	0.9268	26.378	25.991	26.918	-0.022236					70	32	4	0	0	0	0.016475	3	4302	4302;4347;4394		75.571	23.941	1	462350			11793	8529;12963;8544;8548;8571;13008;6154;8535	6686	6686	15018;15019;15020	15018		720			-0.025222345991551265
GSNFVPLKK	9	Unmodified	_GSNFVPLKK_					0	0	0		nc|ENSG00000164124|Q7Z5S9-2|TMEM144;ENSG00000164124|ENST00000296529|TMEM144	nc|ENSG00000164124|Q7Z5S9-2|TMEM144	nc|ENSG00000164124|Q7Z5S9-2|TMEM144	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2926025390625	2	495.292559	988.570566	0.26045	0.000129	0.059781	2.9609E-05	0.32023	0.00015861	495.2925355942606	26.062	0.68246	26.062	25.846	26.528	0					37	23	2	0	0	0	0.059067	1	4253	4253		49.527	26.379	1	555400			11794	5795	6687	6687	15021	15021					0.07582350685515848
GSNFVPLKK	9	Unmodified	_GSNFVPLKK_					0	0	0		nc|ENSG00000164124|Q7Z5S9-2|TMEM144;ENSG00000164124|ENST00000296529|TMEM144	nc|ENSG00000164124|Q7Z5S9-2|TMEM144	nc|ENSG00000164124|Q7Z5S9-2|TMEM144	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2926025390625	2	495.292559	988.570566	0.23509	0.00011644	0.078435	3.8848E-05	0.31353	0.00015529	495.29252340674327	26.142	0.67586	26.103	25.871	26.547	-0.038671					41	23	2	0	0	0	0.10812	2	4253	4253;4298		37.075	21.227	1	569550			11795	5795	6687	6687	15022;15023	15022					0.07582350685515848
GSNFVPLKK	9	Unmodified	_GSNFVPLKK_					0	0	0		nc|ENSG00000164124|Q7Z5S9-2|TMEM144;ENSG00000164124|ENST00000296529|TMEM144	nc|ENSG00000164124|Q7Z5S9-2|TMEM144	nc|ENSG00000164124|Q7Z5S9-2|TMEM144	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2926940917969	2	495.292559	988.570566	0.26751	0.0001325	0.88433	0.000438	1.1518	0.0005705	495.29251715248756	25.97	1.0601	25.948	25.524	26.584	-0.022236					76	37	4	0	0	0	0.11813	1	4267	4267		35.612	24.788	1	534480			11796	5795	6687	6687	15024	15024					0.07582350685515848
GSNGFYSYFK	10	Unmodified	_GSNGFYSYFK_					0	0	0		ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8309326171875	2	585.266739	1168.51892	0.42697	0.00024989	-0.22992	-0.00013456	0.19706	0.00011533	585.2664517092549	53.342	0.31384	53.332	53.218	53.531	-0.0096054					17	11	2	0	0	0	0.31597	1	12589	12589		8.4443	5.163	1	212910			11797	8057	6688	6688	15025	15025					-0.058594377990630164
GSNGYILNK	9	Unmodified	_GSNGYILNK_					0	0	0		ENSG00000181090|ENST00000460843|EHMT1;nc|ENSG00000181090|Q9H9B1-4|EHMT1;ENST00000371394.6_1_9:140611085-140686569:+|nuORF;nc|ENSG00000181090|Q9H9B1-3|EHMT1	ENSG00000181090|ENST00000460843|EHMT1	ENSG00000181090|ENST00000460843|EHMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.23797607421875	2	483.256174	964.497795	-0.016702	-8.0713E-06	-2.0679	-0.00099931	-2.0846	-0.0010074	483.25489036502876	27.507	0.45323	27.486	27.266	27.72	-0.021412					33	15	3	0	0	0	0.22143	1	4648	4648		19.362	3.5937	1	237320			11798	7223	6689	6689	15026	15026					0.01412596892100737
GSNLFKLEV	9	Unmodified	_GSNLFKLEV_					0	0	0		GUSB|p.Q568Lfs*24|1|0.45|ENSG00000169919|chr7:65964403-65964409|TGGTACT/-|frameshift_variant;nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB;ENST00000475316.5_1_7:65439511-65446985:-|nuORF	GUSB|p.Q568Lfs*24|1|0.45|ENSG00000169919|chr7:65964403-65964409|TGGTACT/-|frameshift_variant	GUSB|p.Q568Lfs*24|1|0.45|ENSG00000169919|chr7:65964403-65964409|TGGTACT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.3104553222656	2	503.782025	1005.5495	0.18262	9.2001E-05	0.61818	0.00031143	0.8008	0.00040343	503.7820818974125	59.537	0.5677	59.537	59.188	59.756	0					37	19	3	0	0	0	0.18733	1	14482	14482		29.437	7.9002	1	464270			11799	6404	6690	6690	15027	15027					0.04694340586001999
GSNLFKLEV	9	Unmodified	_GSNLFKLEV_					0	0	0		GUSB|p.Q568Lfs*24|1|0.45|ENSG00000169919|chr7:65964403-65964409|TGGTACT/-|frameshift_variant;nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB;ENST00000475316.5_1_7:65439511-65446985:-|nuORF	GUSB|p.Q568Lfs*24|1|0.45|ENSG00000169919|chr7:65964403-65964409|TGGTACT/-|frameshift_variant	GUSB|p.Q568Lfs*24|1|0.45|ENSG00000169919|chr7:65964403-65964409|TGGTACT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.3103942871094	2	503.782025	1005.5495	0.26716	0.00013459	1.1117	0.00056006	1.3789	0.00069465	503.7819596907559	59.34	0.52695	59.431	59.156	59.683	0.091305					37	18	3	0	0	0	0.1269	1	14426	14426		44.392	19.401	1	478590			11800	6404	6690	6690	15028	15028					0.04694340586001999
GSNLFKLEV	9	Unmodified	_GSNLFKLEV_					0	0	0		GUSB|p.Q568Lfs*24|1|0.45|ENSG00000169919|chr7:65964403-65964409|TGGTACT/-|frameshift_variant;nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB;ENST00000475316.5_1_7:65439511-65446985:-|nuORF	GUSB|p.Q568Lfs*24|1|0.45|ENSG00000169919|chr7:65964403-65964409|TGGTACT/-|frameshift_variant	GUSB|p.Q568Lfs*24|1|0.45|ENSG00000169919|chr7:65964403-65964409|TGGTACT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.31048583984375	2	503.782025	1005.5495	0.49045	0.00024708	1.3277	0.00066887	1.8182	0.00091596	503.78183913336346	59.467	0.46286	59.456	59.251	59.714	-0.011486					33	15	3	0	0	0	0.18261	1	14486	14486		37.771	6.503	1	491950			11801	6404	6690	6690	15029	15029					0.04694340586001999
GSNPKAHIAAK	11	Unmodified	_GSNPKAHIAAK_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.3102416992188	2	547.309272	1092.60399	0.24157	0.00013222	0.72298	0.00039569	0.96455	0.00052791	547.3097649785202	12.625	0.40725	12.526	12.407	12.815	-0.098381					26	13	3	0	0	0	0.41721	1	185	185		8.9762	3.2444	1	72825			11802	2153	6691	6691	15030	15030					0.061393524573986724
GSNPKAHIAAK	11	Unmodified	_GSNPKAHIAAK_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	547.309272	1092.60399	0.084495	4.6245E-05	0.73169	0.00040046	0.81619	0.00044671	547.3097121842351	12.614	0.28854	12.614	12.526	12.815	0	0.03954	3.8161E-05	NaN	8.9762	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66243			11803	2153	6691	6691							0.061393524573986724
GSNPKAHIAAK	11	Unmodified	_GSNPKAHIAAK_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	547.309272	1092.60399	0.089437	4.895E-05	0.40892	0.00022381	0.49836	0.00027276	547.3098058470446	12.651	0.29978	12.583	12.463	12.763	-0.067496	0.0086155	-0.00031515	NaN	8.9762	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52573			11804	2153	6691	6691							0.061393524573986724
GSNPYTLKL	9	Unmodified	_GSNPYTLKL_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7744445800781	2	496.7742	991.533846	0.65713	0.00032644	-0.6755	-0.00033557	-0.018372	-9.1266E-06	496.7737222183255	47.83	0.85756	47.83	47.411	48.268	0					52	30	3	0	0	0	0.072885	1	10842	10842		44.392	9.9902	1	1576300			11805	4555	6692	6692	15031	15031					0.037740540689469526
GSNPYTLKL	9	Unmodified	_GSNPYTLKL_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7742919921875	2	496.7742	991.533846	0.67784	0.00033673	-0.45822	-0.00022763	0.21962	0.0001091	496.77385426167587	47.787	0.94026	47.834	47.374	48.314	0.04752					57	34	3	0	0	0	0.10335	1	10827	10827		37.771	13.751	1	1291500			11806	4555	6692	6692	15032	15032					0.037740540689469526
GSNPYTLKL	9	Unmodified	_GSNPYTLKL_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7745361328125	2	496.7742	991.533846	0.73694	0.00036609	-0.39343	-0.00019545	0.34351	0.00017065	496.77410601162273	47.581	0.34658	47.625	47.373	47.72	0.04332					24	12	2	0	0	0	0.043673	1	10803	10803		55.249	31.228	1	791130			11807	4555	6692	6692	15033	15033					0.037740540689469526
GSPLGGREALE	11	Unmodified	_GSPLGGREALE_					0	0	0		ENST00000278935.7_2_11:117283083-117283290:+|nuORF	ENST00000278935.7_2_11:117283083-117283290:+|nuORF	ENST00000278935.7_2_11:117283083-117283290:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3068237304688	2	543.28292	1084.55129	0.36512	0.00019836	-0.38243	-0.00020777	-0.017312	-9.4052E-06	543.2825627052722	29.599	0.42911	29.613	29.421	29.85	0.013474					36	14	3	0	0	0	0.33149	1	5377	5377		5.2969	1.7004	1	155480			11808	9108	6693	6693	15034	15034					0.012393496039294405
GSPVPSSQPA	10	Unmodified	_GSPVPSSQPA_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.2757568359375	2	463.732532	925.45051	-0.16539	-7.6699E-05	-0.070521	-3.2703E-05	-0.23592	-0.0001094	463.73242057499345	18.716	0.61398	18.658	18.432	19.046	-0.058174					39	21	3	0	0	0	0.31958	1	2008	2008		5.2969	0	1	117330			11809	5785	6694	6694	15035	15035					-0.015196823789096925
GSSAPGLRV	9	Unmodified	_GSSAPGLRV_					0	0	0		ENST00000269397.8_2_17:77807391-77807700:-|nuORF	ENST00000269397.8_2_17:77807391-77807700:-|nuORF	ENST00000269397.8_2_17:77807391-77807700:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2279052734375	2	422.237784	842.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.148	1	50.148	49.648	50.648	0								0	0	0	0.2362	1	11608	11608		10.824	0.75	1				11810	9077	6695	6695	15036	15036					0.03348345066183356
GSSASLVLK	9	Unmodified	_GSSASLVLK_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8882751464844	2	431.255643	860.496732	0.015796	6.812E-06	-0.31355	-0.00013522	-0.29775	-0.00012841	431.25542972413365	30.005	1.2635	30.017	29.589	30.853	0.012266					107	43	4	0	0	0	0.19686	1	5389	5389		19.362	6.3195	1	1580800			11811	1046	6696	6696	15037	15037					0.06090382523188964
GSSASLVLK	9	Unmodified	_GSSASLVLK_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	431.255643	860.496732	0.028095	1.2116E-05	-0.22196	-9.5723E-05	-0.19387	-8.3606E-05	431.25546406084845	30.016	1.1477	30.016	29.633	30.781	0	-0.0019625	-7.1966E-05	NaN	19.362	95	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1524100			11812	1046	6696	6696							0.06090382523188964
GSSAWFSS	8	Unmodified	_GSSAWFSS_					0	0	0		ENST00000597346.1_1_11:2720561-2721134:-|nuORF	ENST00000597346.1_1_11:2720561-2721134:-|nuORF	ENST00000597346.1_1_11:2720561-2721134:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.6797180175781	2	414.679768	827.344983	0.38779	0.00016081	-0.36066	-0.00014956	0.027125	1.1248E-05	414.6795099808253	91.176	0.89865	91.177	90.738	91.636	0.00046539					142	65	3	0	0	0	0.45169	1	24264	24264		5.2307	0	1	2444900			11813	12234	6697	6697	15038	15038					-0.07559598504519727
GSSDVIIHR	9	Unmodified	_GSSDVIIHR_					0	0	0		nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;ENST00000532550.1_1_11:601671-606691:+|nuORF	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.26727294921875	2	492.267073	982.519593	0.33561	0.00016521	0.059109	2.9097E-05	0.39472	0.00019431	492.2670639214765	21.777	0.9887	21.777	21.487	22.476	0					99	35	4	0	0	0	0.0027395	1	2955	2955		114.2	61.933	1	1469800			11814	916	6698	6698	15039	15039					0.02763401640675056
GSSDVIIHR	9	Unmodified	_GSSDVIIHR_					0	0	0		nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;ENST00000532550.1_1_11:601671-606691:+|nuORF	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2671813964844	2	492.267073	982.519593	0.26027	0.00012812	0.086376	4.252E-05	0.34665	0.00017064	492.2671019258373	21.813	1.0289	21.764	21.405	22.434	-0.049377					102	36	4	0	0	0	0.0054984	1	3015	3015		86.332	42.474	1	1569300			11815	916	6698	6698	15040	15040					0.02763401640675056
GSSDVIIHR	9	Unmodified	_GSSDVIIHR_					0	0	0		nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;ENST00000532550.1_1_11:601671-606691:+|nuORF	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	492.267073	982.519593	0.39833	0.00019609	0.010375	5.1073E-06	0.40871	0.00020119	492.26704786462346	21.886	1.2179	21.785	21.338	22.556	-0.10034	0.0096674	-4.9136E-05	NaN	114.2	108	44	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1562600			11816	916	6698	6698							0.02763401640675056
GSSEPITVK	9	Unmodified	_GSSEPITVK_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.2507019042969	2	459.250557	916.486562	-0.091295	-4.1927E-05	0.11752	5.3973E-05	0.026229	1.2046E-05	459.2505580743564	23.626	0.94023	23.626	23.173	24.113	0					78	32	4	0	0	0	0.18479	1	3374	3374		28.495	11.382	1	183200			11817	830	6699	6699	15041	15041					0.024977747979505693
GSSEPITVK	9	Unmodified	_GSSEPITVK_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.2507019042969	2	459.250557	916.486562	-0.14797	-6.7957E-05	0.20268	9.3082E-05	0.05471	2.5126E-05	459.2505859046097	23.163	0.51202	23.163	22.936	23.448	0					33	17	2	0	0	0	0.18479	1	3374	3374		28.495	11.382	1	260910			11818	830	6699	6699	15042	15042					0.024977747979505693
GSSEPITVK	9	Unmodified	_GSSEPITVK_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.250244140625	2	459.250557	916.486562	0.13699	6.2915E-05	-0.25087	-0.00011521	-0.11387	-5.2297E-05	459.25036715074157	23.266	0.52271	23.221	22.977	23.5	-0.044867					34	18	2	0	0	0	0.1645	1	3388	3388		40.239	24.09	1	313000			11819	830	6699	6699	15043	15043					0.024977747979505693
GSSFHSHLSEL	11	Unmodified	_GSSFHSHLSEL_					0	0	0		ENSG00000203326|ENST00000474037|ZNF525	ENSG00000203326|ENST00000474037|ZNF525	ENSG00000203326|ENST00000474037|ZNF525	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.7861328125	2	600.785827	1199.5571	0.3306	0.00019862	-0.36772	-0.00022092	-0.037122	-2.2302E-05	600.7856504865588	62.881	0.81114	62.873	62.597	63.408	-0.0085564					59	29	3	0	0	0	0.23983	1	15571	15571		27.629	0	1	622780			11820	8179	6700	6700	15044	15044					-0.03469551884381872
GSSNSYAIK	9	Unmodified	_GSSNSYAIK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.275634765625	2	463.732532	925.45051	-0.17727	-8.2208E-05	-0.028312	-1.3129E-05	-0.20559	-9.5337E-05	463.7324595702054	18.666	0.67463	18.666	18.391	19.066	0					44	23	3	0	0	0	0.23749	1	1992	1992		20.415	7.3721	1	117170			11821	1233	6701	6701	15045	15045					-0.015196823789096925
GSSNSYAIK	9	Unmodified	_GSSNSYAIK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.27581787109375	2	463.732532	925.45051	-0.15916	-7.3809E-05	-0.12746	-5.9106E-05	-0.28662	-0.00013291	463.73241974229273	18.735	0.64249	18.617	18.387	19.03	-0.11739					43	22	3	0	0	0	0.24848	1	2007	2007		13.906	0	1	118500			11822	1233	6701	6701	15046	15046					-0.015196823789096925
GSSNSYAIKK	10	Unmodified	_GSSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7799682617188	2	527.780013	1053.54547	0.20025	0.00010569	-0.10978	-5.7938E-05	0.090472	4.7749E-05	527.7799445889751	14.516	0.45335	14.516	14.335	14.789	0					40	15	4	0	0	0	0.048379	1	751	751		59.368	37.831	1	375850			11823	1233	6702	6702	15047	15047					0.02084251092287559
GSSNSYAIKK	10	Unmodified	_GSSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.780029296875	2	527.780013	1053.54547	0.15885	8.3838E-05	-0.012953	-6.8366E-06	0.1459	7.7001E-05	527.7800067671964	14.674	0.45671	14.569	14.396	14.853	-0.10466					43	15	4	0	0	0	0.084702	1	802	802		51.415	29.878	1	373210			11824	1233	6702	6702	15048	15048					0.02084251092287559
GSSNSYAIKK	10	Unmodified	_GSSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.780029296875	2	527.780013	1053.54547	0.17714	9.349E-05	-0.017111	-9.0307E-06	0.16003	8.4459E-05	527.7799565137381	14.643	0.44291	14.576	14.427	14.869	-0.066068					46	15	5	0	0	0	0.067258	1	795	795		55.235	30.244	1	320670			11825	1233	6702	6702	15049	15049					0.02084251092287559
GSSPEQVVRPK	11	Unmodified	_GSSPEQVVRPK_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.32666015625	2	592.325119	1182.63569	0.54368	0.00032203	1.6044	0.00095035	2.1481	0.0012724	592.3259253729904	20.274	0.90697	20.164	19.618	20.525	-0.11003					58	32	3	0	0	0	0.28246	2	2519	2465;2519		23.801	16.512	1	185320			11826	8175	6703	6703	15050;15051	15051					0.05167300420680476
GSSPEQVVRPK	11	Unmodified	_GSSPEQVVRPK_					0	0	0		nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2	nc|ENSG00000198961|O43164-2|PJA2	nc|ENSG00000198961|O43164-2|PJA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.3260498046875	2	592.325119	1182.63569	0.63611	0.00037678	1.4118	0.00083622	2.0479	0.001213	592.3258343989478	20.181	0.711	20.126	19.705	20.416	-0.055693					54	25	3	0	0	0	0.33902	2	2446	2446;2497		18.721	11.794	1	223800			11827	8175	6703	6703	15052;15053	15052					0.05167300420680476
GSSPVFNQR	9	Unmodified	_GSSPVFNQR_					0	0	0		nc|ENSG00000119760|O94864-4|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;ENSG00000119760|ENST00000337768|SUPT7L	nc|ENSG00000119760|O94864-4|SUPT7L	nc|ENSG00000119760|O94864-4|SUPT7L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2515563964844	2	496.251423	990.488293	0.33324	0.00016537	-0.029484	-1.4632E-05	0.30375	0.00015074	496.25120126642304	24.35	0.78769	24.35	24.029	24.817	0					57	26	3	0	0	0	0.12642	1	3723	3723		34.402	17.315	1	139810			11828	2905	6704	6704	15054	15054					-0.007331713934263462
GSSPVFNQR	9	Unmodified	_GSSPVFNQR_					0	0	0		nc|ENSG00000119760|O94864-4|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;ENSG00000119760|ENST00000337768|SUPT7L	nc|ENSG00000119760|O94864-4|SUPT7L	nc|ENSG00000119760|O94864-4|SUPT7L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2517395019531	2	496.251423	990.488293	0.40161	0.0001993	-0.37347	-0.00018534	0.028136	1.3963E-05	496.25119716347643	24.463	0.83085	24.391	24.151	24.982	-0.072559					55	28	3	0	0	0	0.079752	1	3768	3768		41.84	24.753	1	188230			11829	2905	6704	6704	15055	15055					-0.007331713934263462
GSSPVFNQR	9	Unmodified	_GSSPVFNQR_					0	0	0		nc|ENSG00000119760|O94864-4|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;ENSG00000119760|ENST00000337768|SUPT7L	nc|ENSG00000119760|O94864-4|SUPT7L	nc|ENSG00000119760|O94864-4|SUPT7L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.25152587890625	2	496.251423	990.488293	0.21029	0.00010436	-0.11933	-5.9219E-05	0.090956	4.5137E-05	496.2513286194511	24.446	0.62269	24.407	24.166	24.789	-0.038927					38	21	2	0	0	0	0.079752	1	3754	3754		41.84	24.753	1	216630			11830	2905	6704	6704	15056	15056					-0.007331713934263462
GSSSDTYLFKK	11	Unmodified	_GSSSDTYLFKK_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.5433044433594	3	411.543432	1231.60847	-0.00079426	-3.2687E-07	0.061249	2.5206E-05	0.060454	2.488E-05	411.5433362532407	28.91	0.85349	28.91	28.446	29.3	0					90	30	5	0	0	0	0.2876	1	5127	5127		23.34	15.863	1	433030			11831	7481	6705	6705	15057	15057					0.0019277208964467718
GSSSDTYLFKK	11	Unmodified	_GSSSDTYLFKK_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.543432	1231.60847	0.14822	6.0999E-05	-0.12016	-4.9453E-05	0.028055	1.1546E-05	411.87795199641045	28.904	0.76594	28.9	28.519	29.285	-0.0042572	-0.0048458	-0.00026858	NaN	23.34	67	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	556060			11832	7481	6705	6705							0.0019277208964467718
GSSSDTYLFKK	11	Unmodified	_GSSSDTYLFKK_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	411.543432	1231.60847	-0.01654	-6.8068E-06	0.37142	0.00015286	0.35488	0.00014605	411.5433038355568	28.896	0.81973	28.904	28.504	29.323	0.0077152	-0.0009921	0.00033835	NaN	23.34	69	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340650			11833	7481	6705	6705							0.0019277208964467718
GSSSVILEK	9	Unmodified	_GSSSVILEK_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.787353515625	2	460.258382	918.502212	-0.11652	-5.3629E-05	0.61322	0.00028224	0.4967	0.00022861	460.2585695045296	25.909	0.47285	25.909	25.769	26.242	0					31	16	3	0	0	0	0.25612	1	4241	4241		8.1555	1.8014	1	146780			11834	6985	6706	6706	15058	15058					0.03970061315010298
GSSSVILEK	9	Unmodified	_GSSSVILEK_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.7874755859375	2	460.258382	918.502212	-0.12366	-5.6918E-05	0.5221	0.0002403	0.39844	0.00018338	460.258553209446	25.986	0.37023	25.948	25.783	26.153	-0.038671					21	12	2	0	0	0	0.24924	1	4205	4205		14.405	5.0223	1	139610			11835	6985	6706	6706	15059	15059					0.03970061315010298
GSSSVILEK	9	Unmodified	_GSSSVILEK_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.78753662109375	2	460.258382	918.502212	0.065341	3.0074E-05	-0.071197	-3.2769E-05	-0.0058564	-2.6955E-06	460.2584071735393	26.005	0.43454	25.983	25.802	26.236	-0.022236					32	15	3	0	0	0	0.24429	1	4239	4239		18.373	1.2602	1	147760			11836	6985	6706	6706	15060	15060					0.03970061315010298
GSSTIRNLK	9	Unmodified	_GSSTIRNLK_					0	0	0		nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB;nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-2|PI4KB	nc|ENSG00000143393|Q9UBF8-2|PI4KB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7536926269531	2	488.282723	974.550893	0.047906	2.3392E-05	-2.4537	-0.0011981	-2.4058	-0.0011747	488.2822688441102	15.551	0.59996	15.551	15.319	15.918	0					37	20	3	0	0	0	0.25527	1	1072	1072		8.7454	3.9894	1	86298			11837	4512	6707	6707	15061	15061					0.06259974674742352
GSSTIRNLK	9	Unmodified	_GSSTIRNLK_					0	0	0		nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB;nc|ENSG00000143393|Q9UBF8-3|PI4KB	nc|ENSG00000143393|Q9UBF8-2|PI4KB	nc|ENSG00000143393|Q9UBF8-2|PI4KB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.75384521484375	2	488.282723	974.550893	0.063355	3.0935E-05	-0.74542	-0.00036398	-0.68207	-0.00033304	488.28269068160733	15.613	0.45258	15.549	15.247	15.7	-0.064413					30	14	3	0	0	0	0.25843	1	1086	1086		5.7319	1.7875	1	81471			11838	4512	6707	6707	15062	15062					0.06259974674742352
GSSTKASFTPF	11	Unmodified	_GSSTKASFTPF_					0	0	0		nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7630615234375	2	565.279846	1128.54514	0.16453	9.3007E-05	-1.2621	-0.00071343	-1.0975	-0.00062042	565.7804927836609	51.712	1.0641	51.722	51.22	52.284	0.0095634					69	39	3	0	0	0	0.32017	1	12229	12229		20.415	1.1575	1	544480			11839	5122	6708	6708	15063	15063					-0.013991686275630855
GSSYSSIPK	9	Unmodified	_GSSYSSIPK_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2350158691406	2	463.234907	924.455261	-0.16053	-7.4365E-05	0.3635	0.00016839	0.20297	9.4023E-05	463.2350286338545	25.212	0.70574	25.156	24.719	25.425	-0.055931					47	24	3	0	0	0	0.24471	1	4026	4026		17.113	6.289	1	315140			11840	3377	6709	6709	15064	15064					-0.009987982361394643
GSSYSSIPK	9	Unmodified	_GSSYSSIPK_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	463.234907	924.455261	-0.064241	-2.9759E-05	0.13114	6.0748E-05	0.066898	3.0989E-05	463.23489608670644	25.153	0.7395	25.153	24.736	25.475	0	-0.006729	-0.00019446	NaN	17.113	58	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313760			11841	3377	6709	6709							-0.009987982361394643
GSSYSSIPK	9	Unmodified	_GSSYSSIPK_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	463.234907	924.455261	-0.23476	-0.00010875	0.51385	0.00023803	0.2791	0.00012929	463.2350000866408	25.201	0.75171	25.169	24.709	25.461	-0.031408	0.0098643	0.00016012	NaN	17.113	53	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230180			11842	3377	6709	6709							-0.009987982361394643
GSTEKVLRV	9	Unmodified	_GSTEKVLRV_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7925720214844	2	494.792924	987.571294	0.31946	0.00015807	-0.97461	-0.00048223	-0.65515	-0.00032416	494.7922041657086	24.257	0.48148	24.257	23.973	24.454	0					41	16	3	0	0	0	0.064268	1	3684	3684		47.594	21.326	1	206540			11843	2580	6710	6710	15065	15065					0.07701145334567627
GSTEKVLRV	9	Unmodified	_GSTEKVLRV_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7926330566406	2	494.792924	987.571294	0.41983	0.00020773	-0.87937	-0.00043511	-0.45954	-0.00022738	494.79238601295884	24.36	0.55796	24.288	23.997	24.555	-0.072559					41	18	3	0	0	0	0.05341	1	3744	3744		51.63	28.894	1	194720			11844	2580	6710	6710	15066	15066					0.07701145334567627
GSTEKVLRV	9	Unmodified	_GSTEKVLRV_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7928771972656	2	494.792924	987.571294	0.26787	0.00013254	-0.4329	-0.0002142	-0.16502	-8.1653E-05	494.79265301466114	24.358	0.45571	24.32	24.081	24.537	-0.038927					37	15	3	0	0	0	0.04299	1	3730	3730		55.503	29.235	1	234990			11845	2580	6710	6710	15067	15067					0.07701145334567627
GSTHVLTPK	9	Unmodified	_GSTHVLTPK_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2660217285156	2	470.266542	938.51853	-0.05606	-2.6363E-05	-0.43886	-0.00020638	-0.49492	-0.00023274	470.2662038997199	15.389	0.44711	15.325	15.158	15.605	-0.064414					28	14	3	0	0	0	0.25714	1	1022	1022		15.248	2.206	1	111880			11846	2720	6711	6711	15068	15068					0.046811872717512415
GSVDYWEKF	9	Unmodified	_GSVDYWEKF_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.279541015625	2	565.761289	1129.50803	0.096338	5.4504E-05	0.19993	0.00011311	0.29626	0.00016761	565.7613361015233	64.971	0.98711	64.971	64.647	65.634	0					101	35	4	0	0	0	0.22188	1	16248	16248		20.454	4.6064	1	2346700			11847	415	6712	6712	15069	15069					-0.051548401733498395
GSVEAQTALK	10	Unmodified	_GSVEAQTALK_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2746276855469	2	502.274564	1002.53457	0.2574	0.00012929	0.10575	5.3114E-05	0.36315	0.0001824	502.2745356356435	24.195	0.54251	24.195	23.943	24.486	0					29	18	2	0	0	0	0.017207	1	3700	3700		74.772	27.04	1	108080			11848	500	6713	6713	15070	15070					0.03340848717982681
GSVEAQTALK	10	Unmodified	_GSVEAQTALK_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2751159667969	2	502.274564	1002.53457	0.34484	0.0001732	0.71658	0.00035992	1.0614	0.00053312	502.2746369015572	24.319	0.4721	24.247	24.055	24.527	-0.072559					25	15	2	0	0	0	0.041387	1	3726	3726		60.899	20.174	1	119560			11849	500	6713	6713	15071	15071					0.03340848717982681
GSVEAQTALK	10	Unmodified	_GSVEAQTALK_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2747802734375	2	502.274564	1002.53457	0.24564	0.00012338	0.10584	5.3159E-05	0.35148	0.00017654	502.2745040598548	24.302	0.48203	24.264	24.081	24.563	-0.038927					24	16	2	0	0	0	0.0044422	1	3719	3719		94.909	45.354	1	160360			11850	500	6713	6713	15072	15072					0.03340848717982681
GSVELPIVGK	10	Unmodified	_GSVELPIVGK_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7976989746094	2	499.797675	997.580796	0.43155	0.00021569	-0.71851	-0.00035911	-0.28696	-0.00014342	499.7971821296078	50.11	1.0528	50.11	49.408	50.461	0					106	38	4	0	0	0	0.0016917	1	11612	11612		110.79	67.02	1	3851400			11851	8525	6714	6714	15073	15073					0.08190913620092033
GSVELPIVGK	10	Unmodified	_GSVELPIVGK_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	499.797675	997.580796	0.70859	0.00035415	-0.94212	-0.00047087	-0.23353	-0.00011672	499.7971080789685	50.091	1.0604	50.136	49.515	50.576	0.044891	0.024787	-4.6074E-05	NaN	110.79	108	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3877700			11852	8525	6714	6714							0.08190913620092033
GSVELPIVGK	10	Unmodified	_GSVELPIVGK_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	499.797675	997.580796	0.67717	0.00033845	-0.99991	-0.00049975	-0.32274	-0.00016131	499.79705417299493	50.067	1.0116	50.088	49.483	50.495	0.020691	-0.023376	-0.00010384	NaN	110.79	114	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4043300			11853	8525	6714	6714							0.08190913620092033
GSVFRRGA	8	Unmodified	_GSVFRRGA_					0	0	0			REV__ENST00000376138.7_2_10:27149870-27149954:-|nuORF	REV__ENST00000376138.7_2_10:27149870-27149954:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.263427734375	2	425.238119	848.461684	-0.29805	-0.00012674	0.60072	0.00025545	0.30267	0.0001287	425.23820791158744	16.434	0.64841	16.319	16.075	16.723	-0.11434					64	22	4	0	0	0	0.34131	1	1447	1447		12.532	3.9383	1	563200	+		11854	20483	6715	6715	15074	15074					0.031391845059033585
GSVGSSLNIAL	11	Unmodified	_GSVGSSLNIAL_					0	0	0			REV__ENSG00000213780|ENST00000259895|GTF2H4	REV__ENSG00000213780|ENST00000259895|GTF2H4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.2645263671875	2	509.282389	1016.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.815	1	21.766	21.266	22.266	-0.049377								0	0	0	0.36137	1	2954	2954		5.7319	0	1		+		11855	19043	6716	6716	15075	15075					0.04261135235026359
GSVPGGSITK	10	Unmodified	_GSVPGGSITK_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7505798339844	2	451.750724	901.486896	0.019757	8.9251E-06	-0.11691	-5.2813E-05	-0.09715	-4.3887E-05	451.7506143601039	22.579	0.84619	22.534	22.238	23.084	-0.044865					72	29	3	0	0	0	0.36368	1	3158	3158		10.151	0.76745	1	387030			11856	7872	6717	6717	15076	15076					0.03221194517789172
GSVPVIIAR	9	Unmodified	_GSVPVIIAR_					0	0	0		nc|ENSG00000198948|O75121-3|MFAP3L;ENSG00000198948|ENST00000361618|MFAP3L	nc|ENSG00000198948|O75121-3|MFAP3L	nc|ENSG00000198948|O75121-3|MFAP3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2870788574219	2	456.287277	910.560001	-0.092392	-4.2157E-05	0.39266	0.00017917	0.30027	0.00013701	456.2873307742117	42.201	0.77374	42.201	41.932	42.706	0					52	27	3	0	0	0	0.0059482	1	9167	9167		85.642	41.783	1	1774000			11857	8171	6718	6718	15077	15077					0.10114368031076992
GSVPVIIAR	9	Unmodified	_GSVPVIIAR_					0	0	0		nc|ENSG00000198948|O75121-3|MFAP3L;ENSG00000198948|ENST00000361618|MFAP3L	nc|ENSG00000198948|O75121-3|MFAP3L	nc|ENSG00000198948|O75121-3|MFAP3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.28729248046875	2	456.287277	910.560001	0.26747	0.00012204	-0.16999	-7.7566E-05	0.097476	4.4477E-05	456.28710254897953	42.087	0.79676	42.172	41.959	42.755	0.085201					53	28	3	0	0	0	0.0079761	2	9150	9101;9150		82.529	26.352	1	1569300			11858	8171	6718	6718	15078;15079	15079					0.10114368031076992
GSVPVIIAR	9	Unmodified	_GSVPVIIAR_					0	0	0		nc|ENSG00000198948|O75121-3|MFAP3L;ENSG00000198948|ENST00000361618|MFAP3L	nc|ENSG00000198948|O75121-3|MFAP3L	nc|ENSG00000198948|O75121-3|MFAP3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2872314453125	2	456.287277	910.560001	0.30004	0.0001369	-0.20958	-9.5629E-05	0.090455	4.1274E-05	456.28712312873415	42.052	0.71561	42.143	41.865	42.581	0.091362					53	24	3	0	0	0	0.014206	2	9129	9082;9129		72.968	33.011	1	1515000			11859	8171	6718	6718	15080;15081	15081					0.10114368031076992
GSVRRHTV	8	Unmodified	_GSVRRHTV_					0	0	0		ENSG00000135362|ENST00000530639|PRR5L;nc|ENSG00000135362|Q6MZQ0-2|PRR5L;ENST00000530627.1_1_11:36476971-36484283:+|nuORF;nc|ENSG00000135362|Q6MZQ0-3|PRR5L;ENST00000389693.3_1_11:36397601-36484283:+|nuORF	ENSG00000135362|ENST00000530639|PRR5L	ENSG00000135362|ENST00000530639|PRR5L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7778015136719	2	456.262125	910.509697	-0.23779	-0.00010849	-1.1115	-0.00050714	-1.3493	-0.00061563	456.2608350343882	13.408	0.25384	13.341	13.189	13.443	-0.067496					11	8	2	0	0	0	0.34378	1	389	389		3.9444	0	1	17992			11860	3866	6719	6719	15082	15082					0.05086258425933465
GSVVLQLK	8	Unmodified	_GSVVLQLK_					0	0	0		ENSG00000109606|ENST00000336812|DHX15;ENST00000503562.1_1_4:24541566-24543501:-|nuORF	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.87298583984375	2	422.268553	842.522553	0.13461	5.6843E-05	-0.46482	-0.00019628	-0.3302	-0.00013944	422.2683576878422	45.181	0.37616	45.256	45.042	45.418	0.075047					18	13	2	0	0	0	0.34131	1	10061	10061		7.9102	1.187	1	68813			11861	2261	6720	6720	15083	15083					0.09499276765473041
GSVYITLKK	9	Unmodified	_GSVYITLKK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.740966796875	2	504.808042	1007.60153	0.41048	0.00020722	-0.29239	-0.0001476	0.11809	5.9615E-05	504.8078183311143	30.195	0.75609	30.195	29.945	30.701	0					67	26	3	0	0	0	0.067763	1	5512	5512		67.838	31.711	1	1238900			11862	4292	6721	6721	15084	15084					0.0980350399973986
GSVYITLKK	9	Unmodified	_GSVYITLKK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7409973144531	2	504.808042	1007.60153	0.37444	0.00018902	-0.2816	-0.00014216	0.092834	4.6863E-05	504.80782698800584	30.217	0.76063	30.245	29.933	30.693	0.027948					69	26	3	0	0	0	0.1645	1	5511	5511		40.239	22.093	1	1241300			11863	4292	6721	6721	15085	15085					0.0980350399973986
GSVYITLKK	9	Unmodified	_GSVYITLKK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7410583496094	2	504.808042	1007.60153	0.014682	7.4116E-06	0.1441	7.2744E-05	0.15878	8.0156E-05	504.8080050238927	30.206	0.82779	30.233	29.956	30.784	0.027157					71	28	4	0	0	0	0.082647	1	5507	5507		61.602	30.965	1	1378100			11864	4292	6721	6721	15086	15086					0.0980350399973986
GSWTRASQLTF	11	Unmodified	_GSWTRASQLTF_					0	0	0		ENST00000474908.5_1_9:35813053-35813759:-|nuORF	ENST00000474908.5_1_9:35813053-35813759:-|nuORF	ENST00000474908.5_1_9:35813053-35813759:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2294921875	3	418.547288	1252.62004	-0.21026	-8.8006E-05	3.0891	0.0012929	2.8788	0.0012049	418.55005977354125	14.205	0.10873	14.139	14.098	14.206	-0.066068					5	3	2	0	0	0	0.33189	1	646	646		5.8681	1.1522	1	9022.3			11865	10928	6722	6722	15087	15087					0.0038301390366086707
GSWYTASG	8	Unmodified	_GSWYTASG_					0	0	0		nc|ENSG00000162959|Q9Y316-2|MEMO1;ENSG00000162959|ENST00000404530|MEMO1	nc|ENSG00000162959|Q9Y316-2|MEMO1	nc|ENSG00000162959|Q9Y316-2|MEMO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.67974853515625	2	414.679768	827.344983	-0.022182	-9.1985E-06	0.032016	1.3277E-05	0.0098343	4.0781E-06	414.6797067661508	91.104	0.86925	91.104	90.758	91.628	0					141	67	3	0	0	0	0.45169	2	24204	24204;24245		5.2307	0	1	1526400			11866	5634	6723	6723	15088;15089	15088					-0.07559598504508358
GSYDPQQIFK	10	Unmodified	_GSYDPQQIFK_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.79345703125	2	591.793121	1181.57169	0.57319	0.00033921	-0.28708	-0.00016989	0.28611	0.00016932	591.7929840515003	48.507	0.8392	48.507	48.131	48.97	0					94	29	5	0	0	0	1.716E-08	3	11094	11063;11094;11141		159.1	111.35	1	7173700			11867	3579	6724	6724	15090;15091;15092	15091					-0.011834797362553218
GSYDPQQIFK	10	Unmodified	_GSYDPQQIFK_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.79345703125	2	591.793121	1181.57169	0.57145	0.00033818	-0.24932	-0.00014755	0.32213	0.00019063	591.7930353749942	48.437	1.0135	48.481	47.902	48.916	0.04332					103	37	5	0	0	0	3.4983E-06	5	11047	11030;11047;11095;11140;11178		154.75	109.05	1	6815500			11868	3579	6724	6724	15093;15094;15095;15096;15097	15094					-0.011834797362553218
GSYDPQQIFK	10	Unmodified	_GSYDPQQIFK_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	591.793121	1181.57169	0.73138	0.00043283	-0.45184	-0.00026739	0.27954	0.00016543	591.7929102523109	48.514	0.86017	48.562	48.158	49.019	0.047523	0.045129	-0.0001286	NaN	159.1	103	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7385700			11869	3579	6724	6724							-0.011834797362553218
GSYFNPGS	8	Unmodified	_GSYFNPGS_					0	0	0		ENSG00000237763|ENST00000370083|AMY1A;ENSG00000187733|ENST00000622339|AMY1C;ENSG00000174876|ENST00000330330|AMY1B;nc|ENSG00000243480|P04746-2|AMY2A;nc|ENSG00000240038|P19961-2|AMY2B;ENSG00000243480|ENST00000414303|AMY2A;ENSG00000240038|ENST00000684275|AMY2B	ENSG00000237763|ENST00000370083|AMY1A	ENSG00000237763|ENST00000370083|AMY1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.6797180175781	2	414.679768	827.344983	0.31724	0.00013155	-0.30303	-0.00012566	0.014208	5.8916E-06	414.6795743976508	91.099	0.80544	91.19	90.816	91.621	0.090668					108	61	2	0	0	0	0.44569	1	24192	24192		7.2892	2.0586	1	1849600			11870	6825	6725	6725	15098	15098					-0.07559598504508358
GSYGAADSFPK	11	Unmodified	_GSYGAADSFPK_					0	0	0		ENSG00000116954|ENST00000373001|RRAGC	ENSG00000116954|ENST00000373001|RRAGC	ENSG00000116954|ENST00000373001|RRAGC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.8237915039062	2	550.256371	1098.49819	-1.0255	-0.00056431	-0.11696	-6.4359E-05	-1.1425	-0.00062867	550.2561841969449	35.05	0.34223	35.05	34.775	35.118	0					16	11	2	0	0	0	0.3303	1	6932	6932		8.4443	2.6839	1	91900			11871	2763	6726	6726	15099	15099					-0.0471202817871017
GSYGIVKK	8	Unmodified	_GSYGIVKK_					0	0	0		chr1:220113377-220114314|131|13.31|0.82|4.03|+|2|None,IARS2|1	chr1:220113377-220114314|131|13.31|0.82|4.03|+|2|None,IARS2|1	chr1:220113377-220114314|131|13.31|0.82|4.03|+|2|None,IARS2|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2528076171875	2	426.252903	850.491253	-0.40616	-0.00017313	0.67492	0.00028769	0.26876	0.00011456	426.25297033817964	12.822	0.41916	12.822	12.699	13.118	0					26	14	3	0	0	0	0.43302	1	252	252		11.64	0	1	84351			11872	113	6727	6727	15100	15100					0.06002703731383008
GSYGIVKK	8	Unmodified	_GSYGIVKK_					0	0	0		chr1:220113377-220114314|131|13.31|0.82|4.03|+|2|None,IARS2|1	chr1:220113377-220114314|131|13.31|0.82|4.03|+|2|None,IARS2|1	chr1:220113377-220114314|131|13.31|0.82|4.03|+|2|None,IARS2|1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	426.252903	850.491253	-0.40098	-0.00017092	0.68842	0.00029344	0.28743	0.00012252	426.2531234182038	12.852	0.33675	12.753	12.643	12.98	-0.099291	-0.034915	-4.1937E-05	NaN	11.64	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77896			11873	113	6727	6727							0.06002703731383008
GSYGIVKK	8	Unmodified	_GSYGIVKK_					0	0	0		chr1:220113377-220114314|131|13.31|0.82|4.03|+|2|None,IARS2|1	chr1:220113377-220114314|131|13.31|0.82|4.03|+|2|None,IARS2|1	chr1:220113377-220114314|131|13.31|0.82|4.03|+|2|None,IARS2|1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	426.252903	850.491253	-0.46283	-0.00019728	0.85974	0.00036647	0.3969	0.00016918	426.25309071356	12.856	0.32265	12.788	12.671	12.993	-0.067496	0.00090298	0.00010412	NaN	11.64	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82744			11874	113	6727	6727							0.06002703731383008
GSYIELPAYLK	11	Unmodified	_GSYIELPAYLK_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.3423461914062	2	627.342446	1252.67034	0.48757	0.00030587	-0.18124	-0.0001137	0.30634	0.00019218	627.3422761929617	64.744	0.72989	64.744	64.398	65.128	0					78	26	4	0	0	0	0.00045437	3	16077	16077;16122;16173		104.48	80.695	1	1350700			11875	5577	6728	6728	15101;15102;15103	15101					0.05411123508815763
GSYIELPAYLK	11	Unmodified	_GSYIELPAYLK_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.3427734375	2	627.342446	1252.67034	0.22478	0.00014101	0.11415	7.1613E-05	0.33893	0.00021263	627.3424865842787	64.665	0.69948	64.758	64.391	65.09	0.09288					80	25	5	0	0	0	1.6866E-05	2	16084	16035;16084		117.84	87.997	1	1312300			11876	5577	6728	6728	15104;15105	15105					0.05411123508815763
GSYIELPAYLK	11	Unmodified	_GSYIELPAYLK_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.3426513671875	2	627.342446	1252.67034	0.27409	0.00017195	0.0067474	4.2329E-06	0.28084	0.00017618	627.3424698791957	64.773	0.81287	64.764	64.364	65.177	-0.0095291					73	29	4	0	0	0	2.0416E-05	2	16124	16071;16124		114.5	84.656	1	1527100			11877	5577	6728	6728	15106;15107	15107					0.05411123508815763
GSYNDIFDLF	10	Unmodified	_GSYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.2998046875	2	595.771854	1189.52915	0.16983	0.00010118	0.24105	0.00014361	0.41088	0.00024479	595.7720489827032	97.091	0.62168	97.091	96.85	97.472	0					141	58	3	0	0	0	0.25821	1	25937	25937		34.932	9.5328	1	274590			11878	8529;12963	6729	6729	15108	15108					-0.05802874864480145
GSYNDIFDLF	10	Unmodified	_GSYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.772216796875	2	595.771854	1189.52915	0.33552	0.00019989	0.054533	3.2489E-05	0.39005	0.00023238	595.77195972328	97.023	0.62106	97.093	96.81	97.431	0.070465					144	59	3	0	0	0	0.020018	1	25952	25952		71.708	27.85	1	427460			11879	8529;12963	6729	6729	15109	15109					-0.05802874864480145
GSYNDIFDLF	10	Unmodified	_GSYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.7720947265625	2	595.771854	1189.52915	0.42131	0.00025101	0.06931	4.1293E-05	0.49062	0.0002923	595.7719060867101	97.139	0.64748	97.133	96.862	97.509	-0.0055466					160	61	3	0	0	0	0.005261	2	26022	25983;26022		90.135	32.254	1	644870			11880	8529;12963	6729	6729	15110;15111	15111					-0.05802874864480145
GSYRYYFKK	9	Unmodified	_GSYRYYFKK_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1;ENST00000461023.5_1_16:338124-339729:-|nuORF	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.911865234375	3	404.545108	1210.61349	-0.12857	-5.2012E-05	0.4057	0.00016412	0.27713	0.00011211	404.545268471418	24.97	0.84225	24.97	24.517	25.359	0					56	28	3	0	0	0	0.26063	1	3922	3922		3.8763	2.8628	1	125110			11881	1810	6730	6730	15112	15112					0.016611207429377828
GSYRYYFKK	9	Unmodified	_GSYRYYFKK_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1;ENST00000461023.5_1_16:338124-339729:-|nuORF	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.9120178222656	3	404.545108	1210.61349	-0.29641	-0.00011991	0.56095	0.00022693	0.26454	0.00010702	404.54520669897687	25.079	1.0538	25.023	24.46	25.514	-0.055931					62	36	3	0	0	0	0.25817	1	3938	3938		6.6304	1.3335	1	114960			11882	1810	6730	6730	15113	15113					0.016611207429377828
GSYRYYFKK	9	Unmodified	_GSYRYYFKK_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1;ENST00000461023.5_1_16:338124-339729:-|nuORF	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.9119873046875	3	404.545108	1210.61349	-0.48399	-0.0001958	0.93407	0.00037787	0.45008	0.00018208	404.545351901617	25.006	0.58351	24.975	24.653	25.237	-0.03141					45	19	3	0	0	0	0.2498	1	3933	3933		14.957	7.4801	1	108770			11883	1810	6730	6730	15114	15114					0.016611207429377828
GSYSKAFAR	9	Unmodified	_GSYSKAFAR_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7560729980469	2	493.756341	985.498129	0.3205	0.00015825	-1.049	-0.00051795	-0.7285	-0.0003597	493.7557493796939	19.901	0.53941	19.901	19.574	20.113	0					53	19	4	0	0	0	0.032589	3	2365	2365;2418;2426		59.368	42.255	1	415300			11884	326	6731	6731	15115;15116;15117	15115					0.004800166119480309
GSYSKAFAR	9	Unmodified	_GSYSKAFAR_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7562561035156	2	493.756341	985.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.013	1	19.897	19.397	20.397	-0.11592								0	0	0	0.067964	1	2410	2410		55.503	38.39	1				11885	326	6731	6731	15118	15118					0.004800166119480309
GSYSKAFAR	9	Unmodified	_GSYSKAFAR_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.75555419921875	2	493.756341	985.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.182	1	20.067	19.567	20.567	-0.11592								0	0	0	0.067964	1	2461	2461		55.503	26.421	1				11886	326	6731	6731	15119	15119					0.004800166119480309
GSYSKAFAR	9	Unmodified	_GSYSKAFAR_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7568664550781	2	493.756341	985.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.215	1	20.1	19.6	20.6	-0.11592								0	0	0	0.055092	1	2471	2471		59.368	30.287	1				11887	326	6731	6731	15120	15120					0.004800166119480309
GSYSKAFAR	9	Unmodified	_GSYSKAFAR_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7562255859375	2	493.756341	985.498129	0.54124	0.00026724	-1.1887	-0.00058694	-0.64749	-0.0003197	493.75569226987244	19.975	0.55114	19.919	19.624	20.175	-0.055693					52	19	4	0	0	0	0.003673	2	2381	2381;2430		96.936	69.307	1	463500			11888	326	6731	6731	15121;15122	15121					0.004800166119480309
GSYSLEEPK	9	Unmodified	_GSYSLEEPK_					0	0	0		ENSG00000115884|ENST00000254351|SDC1	ENSG00000115884|ENST00000254351|SDC1	ENSG00000115884|ENST00000254351|SDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.245849609375	2	505.245472	1008.47639	0.30215	0.00015266	-0.11555	-5.8381E-05	0.1866	9.428E-05	505.2453445547209	30.738	0.48143	30.738	30.525	31.007	0					29	16	2	0	0	0	0.07944	1	5701	5701		41.956	7.5538	1	443350			11889	2686	6732	6732	15123	15123					-0.027508329272791343
GSYSLEEPK	9	Unmodified	_GSYSLEEPK_					0	0	0		ENSG00000115884|ENST00000254351|SDC1	ENSG00000115884|ENST00000254351|SDC1	ENSG00000115884|ENST00000254351|SDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2450866699219	2	505.245472	1008.47639	0.23936	0.00012093	-0.34099	-0.00017229	-0.10164	-5.1353E-05	505.24514418875395	30.747	0.48323	30.775	30.58	31.063	0.027946					30	16	2	0	0	0	0.11234	1	5667	5667		51.63	15.503	1	346870			11890	2686	6732	6732	15124	15124					-0.027508329272791343
GSYSLEEPK	9	Unmodified	_GSYSLEEPK_					0	0	0		ENSG00000115884|ENST00000254351|SDC1	ENSG00000115884|ENST00000254351|SDC1	ENSG00000115884|ENST00000254351|SDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.7467956542969	2	505.245472	1008.47639	0.1279	6.4622E-05	-0.71674	-0.00036213	-0.58884	-0.00029751	505.24527007058157	30.686	0.79793	30.713	30.394	31.192	0.027157					53	28	3	0	0	0	0.020233	1	5631	5631		63.961	16.212	1	338090			11891	2686	6732	6732	15125	15125					-0.027508329272791343
GSYSSHISSK	10	Unmodified	_GSYSSHISSK_					0	0	0		nc|ENSG00000148516|P37275-3|ZEB1;nc|ENSG00000148516|P37275-4|ZEB1;nc|ENSG00000148516|P37275-5|ZEB1;ENST00000488625.6_1_10:31676182-31816189:+|nuORF;nc|ENSG00000148516|P37275|ZEB1;ENSG00000148516|ENST00000424869|ZEB1;nc|ENSG00000169554|O60315-2|ZEB2;ENSG00000169554|ENST00000627532|ZEB2	nc|ENSG00000148516|P37275-3|ZEB1	nc|ENSG00000148516|P37275-3|ZEB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3117065429688	2	526.753995	1051.49344	0.20037	0.00010555	-0.14967	-7.8839E-05	0.0507	2.6707E-05	526.7537422190734	14.432	0.45149	14.432	14.249	14.701	0					36	15	4	0	0	0	0.23628	1	720	720		42.312	33.567	1	312390			11892	4818	6733	6733	15126	15126					-0.030249123214844076
GSYSSHISSK	10	Unmodified	_GSYSSHISSK_					0	0	0		nc|ENSG00000148516|P37275-3|ZEB1;nc|ENSG00000148516|P37275-4|ZEB1;nc|ENSG00000148516|P37275-5|ZEB1;ENST00000488625.6_1_10:31676182-31816189:+|nuORF;nc|ENSG00000148516|P37275|ZEB1;ENSG00000148516|ENST00000424869|ZEB1;nc|ENSG00000169554|O60315-2|ZEB2;ENSG00000169554|ENST00000627532|ZEB2	nc|ENSG00000148516|P37275-3|ZEB1	nc|ENSG00000148516|P37275-3|ZEB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3117065429688	2	526.753995	1051.49344	0.16773	8.8353E-05	-0.01684	-8.8704E-06	0.15089	7.9483E-05	526.7537332004391	14.612	0.46184	14.507	14.308	14.77	-0.10466					35	15	3	0	0	0	0.30441	1	761	761		22.775	15.486	1	259530			11893	4818	6733	6733	15127	15127					-0.030249123214844076
GSYSSHISSK	10	Unmodified	_GSYSSHISSK_					0	0	0		nc|ENSG00000148516|P37275-3|ZEB1;nc|ENSG00000148516|P37275-4|ZEB1;nc|ENSG00000148516|P37275-5|ZEB1;ENST00000488625.6_1_10:31676182-31816189:+|nuORF;nc|ENSG00000148516|P37275|ZEB1;ENSG00000148516|ENST00000424869|ZEB1;nc|ENSG00000169554|O60315-2|ZEB2;ENSG00000169554|ENST00000627532|ZEB2	nc|ENSG00000148516|P37275-3|ZEB1	nc|ENSG00000148516|P37275-3|ZEB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.311767578125	2	526.753995	1051.49344	0.17879	9.4177E-05	0.055428	2.9197E-05	0.23422	0.00012337	526.7537933557932	14.59	0.46945	14.524	14.349	14.818	-0.066068					40	16	4	0	0	0	0.16364	1	757	757		55.249	44.449	1	326010			11894	4818	6733	6733	15128	15128					-0.030249123214844076
GSYTFDPVTK	10	Unmodified	_GSYTFDPVTK_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.77490234375	2	557.774396	1113.53424	0.23177	0.00012928	0.10603	5.9143E-05	0.33781	0.00018842	557.7743485987172	41.906	1.1953	41.906	41.62	42.816	0					101	47	4	0	0	0	0.0017481	5	9048	9025;9048;9099;9147;9198		110.79	46.832	1	6199200			11895	7495	6734	6734	15129;15130;15131;15132;15133	15130					-0.017985710018592727
GSYTFDPVTK	10	Unmodified	_GSYTFDPVTK_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7749633789062	2	557.774396	1113.53424	0.33092	0.00018458	0.18257	0.00010183	0.51349	0.00028641	557.7744649680548	41.668	1.3301	41.758	41.162	42.492	0.090248					89	52	3	0	0	0	0.0023511	3	9023	8971;9023;9084		107.1	43.139	1	6975400			11896	7495	6734	6734	15134;15135;15136	15135					-0.017985710018592727
GSYTFDPVTK	10	Unmodified	_GSYTFDPVTK_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.775146484375	2	557.774396	1113.53424	0.55736	0.00031088	0.45961	0.00025636	1.017	0.00056724	557.7745507583624	41.593	0.85491	41.689	41.505	42.36	0.096622					73	33	3	0	0	0	0.0017481	3	9009	8964;9009;9058		110.79	46.832	1	6734100			11897	7495	6734	6734	15137;15138;15139	15138					-0.017985710018592727
GTAAIGYLAYK	11	Unmodified	_GTAAIGYLAYK_					0	0	0		ENSG00000122873|ENST00000333926|CISD1	ENSG00000122873|ENST00000333926|CISD1	ENSG00000122873|ENST00000333926|CISD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.7923583984375	2	564.308406	1126.60226	0.53367	0.00030116	-0.13239	-7.471E-05	0.40128	0.00022645	564.3082357423738	47.873	0.41045	47.873	47.634	48.044	0					22	14	2	0	0	0	0.24987	1	10945	10945		40.239	29.44	1	1500200			11898	3075	6735	6735	15140	15140					0.04402298648778924
GTAAIGYLAYK	11	Unmodified	_GTAAIGYLAYK_					0	0	0		ENSG00000122873|ENST00000333926|CISD1	ENSG00000122873|ENST00000333926|CISD1	ENSG00000122873|ENST00000333926|CISD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7921752929688	2	564.308406	1126.60226	0.48421	0.00027324	0.14326	8.0842E-05	0.62746	0.00035408	564.3080365069557	47.797	0.3996	47.84	47.587	47.987	0.04332					23	14	2	0	0	0	0.14454	1	10912	10912		65.474	50.225	1	1542900			11899	3075	6735	6735	15141	15141					0.04402298648778924
GTAAIGYLAYK	11	Unmodified	_GTAAIGYLAYK_					0	0	0		ENSG00000122873|ENST00000333926|CISD1	ENSG00000122873|ENST00000333926|CISD1	ENSG00000122873|ENST00000333926|CISD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.308406	1126.60226	0.74263	0.00041907	-0.24724	-0.00013952	0.49538	0.00027955	564.308140447714	47.859	0.29846	47.906	47.621	47.919	0.047523	0.03327	-0.00012348	NaN	49.527	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1380100			11900	3075	6735	6735							0.04402298648778924
GTAAPFFI	8	Unmodified	_GTAAPFFI_					0	0	0			REV__nc|ENSG00000074803|Q13621-3|SLC12A1;REV__nc|ENSG00000064651|P55011-3|SLC12A2	REV__nc|ENSG00000064651|P55011-3|SLC12A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.529052734375	2	412.221072	822.42759	0.036039	1.4856E-05	-3.7372	-0.0015406	-3.7012	-0.0015257	412.21956678529654	19.115	0.73038	18.998	18.501	19.232	-0.11739					41	25	3	0	0	0	0.34046	1	2142	2142		14.582	0	1	77412	+		11901	13646;13795	6736	6736	15142	15142					0.00927343294279126
GTADVHFER	9	Unmodified	_GTADVHFER_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000512673.1_1_17:79846815-79848630:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2490844726562	2	516.24888	1030.48321	0.13746	7.0965E-05	0.014242	7.3525E-06	0.15171	7.8318E-05	516.2489536053433	23.226	0.94749	23.226	22.969	23.917	0					88	32	4	0	0	0	4.1496E-11	3	3404	3358;3404;3447		189.73	104.09	1	2572200			11902	7389	6737	6737	15143;15144;15145	15144					-0.030814752560445413
GTADVHFER	9	Unmodified	_GTADVHFER_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000512673.1_1_17:79846815-79848630:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2490234375	2	516.24888	1030.48321	0.11578	5.9774E-05	0.051615	2.6646E-05	0.1674	8.642E-05	516.2489670164972	23.336	1.0455	23.248	22.937	23.982	-0.087608					112	36	5	0	0	0	3.4202E-05	4	3431	3389;3431;3474;3517		151.48	93.758	1	2562600			11903	7389	6737	6737	15146;15147;15148;15149	15147					-0.030814752560445413
GTADVHFER	9	Unmodified	_GTADVHFER_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000512673.1_1_17:79846815-79848630:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2490844726562	2	516.24888	1030.48321	0.2289	0.00011817	-0.058767	-3.0339E-05	0.17013	8.7832E-05	516.2489092860462	23.353	0.98021	23.308	23.033	24.014	-0.044867					102	34	4	0	0	0	4.216E-07	4	3433	3386;3433;3474;3520		163.69	87.926	1	2645000			11904	7389	6737	6737	15150;15151;15152;15153	15151					-0.030814752560445413
GTADVHFER	9	Unmodified	_GTADVHFER_					0	0	0		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF;ENST00000512673.1_1_17:79846815-79848630:-|nuORF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2672119140625	2	516.24888	1030.48321	0.15664	8.0867E-05	1.2318	0.00063593	1.3885	0.0007168	516.2497368449625	24.279	0.51753	24.24	24.02	24.537	-0.038927					39	17	3	0	0	0	0.25527	1	3647	3647		8.7454	2.0222	1	105590			11905	7389	6737	6737	15154	15154					-0.030814752560445413
GTAEVELKK	9	Unmodified	_GTAEVELKK_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000562784.1_1_15:72501984-72509791:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7799072265625	2	487.779482	973.544411	0.2636	0.00012858	0.015778	7.6961E-06	0.27938	0.00013628	487.77936303490367	17.235	0.46612	17.235	17.041	17.507	0					33	16	3	0	0	0	0.30824	1	1572	1572		7.609	3.4194	1	87587			11906	862	6738	6738	15155	15155					0.056580367233777906
GTAEVELKK	9	Unmodified	_GTAEVELKK_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000562784.1_1_15:72501984-72509791:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.779541015625	2	487.779482	973.544411	0.08686	4.2368E-05	0.21912	0.00010688	0.30598	0.00014925	487.779412725744	17.38	0.46271	17.263	17.053	17.515	-0.11739					28	16	2	0	0	0	0.2869	1	1623	1623		10.8	4.0763	1	87730			11907	862	6738	6738	15156	15156					0.056580367233777906
GTALLRSGP	9	Unmodified	_GTALLRSGP_					0	0	0			REV__nc|ENSG00000085978|Q676U5-5|ATG16L1	REV__nc|ENSG00000085978|Q676U5-5|ATG16L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.26141357421875	2	436.253434	870.492316	0.059784	2.6081E-05	-0.21704	-9.4683E-05	-0.15725	-6.8602E-05	436.25318684451685	32.839	0.35672	32.895	32.645	33.002	0.055309					19	12	2	0	0	0	0.24467	1	6298	6298		17.113	0	1	139970	+		11908	13971	6739	6739	15157	15157					0.051889181002820806
GTALPGKFK	9	Unmodified	_GTALPGKFK_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.77392578125	2	459.774003	917.533452	0.026328	1.2105E-05	0.0764	3.5127E-05	0.10273	4.7231E-05	459.7739004310767	24.683	1.2745	24.683	24.085	25.359	0					104	43	4	0	0	0	0.018449	3	3845	3797;3845;3889		66.457	22.05	1	924180			11909	2568	6740	6740	15158;15159;15160	15159					0.07138679139757187
GTALPGKFK	9	Unmodified	_GTALPGKFK_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.7738342285156	2	459.774003	917.533452	0.020965	9.639E-06	0.028571	1.3136E-05	0.049536	2.2775E-05	459.77389458602437	24.756	1.082	24.7	24.283	25.365	-0.055931					103	37	4	0	0	0	0.011693	3	3835	3835;3879;3921		76.825	32.418	1	1019400			11910	2568	6740	6740	15161;15162;15163	15161					0.07138679139757187
GTALPGKFK	9	Unmodified	_GTALPGKFK_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.77392578125	2	459.774003	917.533452	-0.10023	-4.6084E-05	0.18157	8.3479E-05	0.081334	3.7395E-05	459.7739704717666	24.734	1.2641	24.703	24.142	25.406	-0.03141					110	43	4	0	0	0	0.018449	2	3821	3821;3874		66.457	28.305	1	1091400			11911	2568	6740	6740	15164;15165	15164					0.07138679139757187
GTALVFAPV	9	Unmodified	_GTALVFAPV_					0	0	0			REV__ENST00000527981.1_1_14:59950407-59951094:-|nuORF	REV__ENST00000527981.1_1_14:59950407-59951094:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2104187011719	2	437.755278	873.496004	-0.14248	-6.2373E-05	1.9838	0.00086841	1.8413	0.00080603	437.7561009744979	25.257	0.84769	25.201	24.691	25.539	-0.055931					46	29	2	0	0	0	0.25417	1	3931	3931		8.5933	0.68312	1	132200	+		11912	21981	6741	6741	15166	15166					0.05419587874143872
GTALYGKEK	9	Unmodified	_GTALYGKEK_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.F753Sfs*5|1|0.07|ENSG00000173193|chr3:122700811-122700812|-/C|frameshift_variant	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7667541503906	2	483.766374	965.518196	-0.085861	-4.1537E-05	0.81624	0.00039487	0.73038	0.00035333	483.76684297214496	14.621	0.31049	14.621	14.448	14.759	0					25	10	3	0	0	0	0.22935	1	784	784		19.362	2.249	1	93132			11913	6700	6742	6742	15167	15167					0.03405767551907957
GTALYGKEK	9	Unmodified	_GTALYGKEK_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.F753Sfs*5|1|0.07|ENSG00000173193|chr3:122700811-122700812|-/C|frameshift_variant	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.76666259765625	2	483.766374	965.518196	-0.029492	-1.4267E-05	0.60556	0.00029295	0.57607	0.00027868	483.76673976643673	14.722	0.25309	14.618	14.489	14.742	-0.10466					15	8	2	0	0	0	0.29124	1	835	835		10.151	1.995	1	96764			11914	6700	6742	6742	15168	15168					0.03405767551907957
GTALYGKEK	9	Unmodified	_GTALYGKEK_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.F753Sfs*5|1|0.07|ENSG00000173193|chr3:122700811-122700812|-/C|frameshift_variant	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7664794921875	2	483.766374	965.518196	-0.035736	-1.7288E-05	0.78993	0.00038214	0.7542	0.00036486	483.7667376725202	14.753	0.30852	14.687	14.51	14.818	-0.066068					16	10	2	0	0	0	0.19083	1	818	818		24.991	2.2547	1	96181			11915	6700	6742	6742	15169	15169					0.03405767551907957
GTALYGKEK	9	Unmodified	_GTALYGKEK_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.F753Sfs*5|1|0.07|ENSG00000173193|chr3:122700811-122700812|-/C|frameshift_variant	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	483.766374	965.518196	-0.029492	-1.4267E-05	0.60556	0.00029295	0.57607	0.00027868	483.76673976643673	14.722	0.25309	14.618	14.489	14.742	-0.10466	-0.024392	-0.00014676	NaN	24.991	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96764			11916	6700	6742	6742							0.03405767551907957
GTAPAFKQK	9	Unmodified	_GTAPAFKQK_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.L1152Sfs*20|1|0.31|ENSG00000065534|chr3:123692847-123692847|T/-|frameshift_variant;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;ENST00000504946.5_1_3:123400948-123419770:-|nuORF	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.2688903808594	2	474.269084	946.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.758	1	14.653	14.153	15.153	-0.10466								0	0	0	0.15136	1	824	824		34.402	9.0024	1				11917	819	6743	6743	15170	15170					0.048214911343848144
GTAPAFKQK	9	Unmodified	_GTAPAFKQK_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.L1152Sfs*20|1|0.31|ENSG00000065534|chr3:123692847-123692847|T/-|frameshift_variant;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;ENST00000504946.5_1_3:123400948-123419770:-|nuORF	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.26904296875	2	474.269084	946.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.763	1	14.698	14.198	15.198	-0.065357								0	0	0	0.065718	1	822	822		56.177	16.22	1				11918	819	6743	6743	15171	15171					0.048214911343848144
GTAQLTLLH	9	Unmodified	_GTAQLTLLH_					0	0	0		ENST00000316846.2_11:65545618-65547282:-|nuORF;ENSG00000254470|ENST00000532090|AP5B1	ENST00000316846.2_11:65545618-65547282:-|nuORF	ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.9296569824219	2	477.274367	952.53418	0.41099	0.00019615	0.08869	4.233E-05	0.49968	0.00023848	477.2743417628147	44.812	0.56525	44.812	44.581	45.146	0					33	20	2	0	0	0	0.18123	1	10000	10000		27.629	0	1	407040			11919	8611	6744	6744	15172	15172					0.056014737887949195
GTAQLTLLH	9	Unmodified	_GTAQLTLLH_					0	0	0		ENST00000316846.2_11:65545618-65547282:-|nuORF;ENSG00000254470|ENST00000532090|AP5B1	ENST00000316846.2_11:65545618-65547282:-|nuORF	ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.9298095703125	2	477.274367	952.53418	0.38052	0.00018161	0.26841	0.0001281	0.64893	0.00030972	477.27449331905945	44.701	0.52576	44.77	44.567	45.093	0.068569					34	18	2	0	0	0	0.14961	1	9903	9903		41.84	0	1	495040			11920	8611	6744	6744	15173	15173					0.056014737887949195
GTAQLTLLH	9	Unmodified	_GTAQLTLLH_					0	0	0		ENST00000316846.2_11:65545618-65547282:-|nuORF;ENSG00000254470|ENST00000532090|AP5B1	ENST00000316846.2_11:65545618-65547282:-|nuORF	ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.9295349121094	2	477.274367	952.53418	0.42751	0.00020404	0.15978	7.6261E-05	0.5873	0.0002803	477.2744338903934	44.738	0.54044	44.813	44.475	45.016	0.075047					30	19	2	0	0	0	0.19686	1	9888	9888		31.268	0	1	392510			11921	8611	6744	6744	15174	15174					0.056014737887949195
GTARKEISL	9	Unmodified	_GTARKEISL_					0	0	0		ENST00000585735.1_1_17:40342468-40343067:-|nuORF	ENST00000585735.1_1_17:40342468-40343067:-|nuORF	ENST00000585735.1_1_17:40342468-40343067:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2974853515625	2	487.785099	973.555644	0.31417	0.00015325	3.3006	0.00161	3.6148	0.0017632	487.7871896160843	58.016	0.90646	58.102	57.765	58.671	0.085621					43	32	2	0	0	0	0.19747	1	14051	14051		24.021	1.2843	1	327610			11922	12110	6745	6745	15175	15175					0.06780858817523949
GTASPVANR	9	Unmodified	_GTASPVANR_					0	0	0		nc|ENSG00000162897|Q8WWV6-4|FCAMR;nc|ENSG00000162897|Q8WWV6|FCAMR;nc|ENSG00000162897|Q8WWV6-5|FCAMR;ENSG00000162897|ENST00000324852|FCAMR	nc|ENSG00000162897|Q8WWV6-4|FCAMR	nc|ENSG00000162897|Q8WWV6-4|FCAMR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.7327880859375	2	436.732866	871.451179	-0.31937	-0.00013948	0.091671	4.0036E-05	-0.2277	-9.9445E-05	436.7328914147816	14.691	0.6734	14.691	14.307	14.981	0					61	23	4	0	0	0	0.05341	1	810	810		51.63	13.454	1	285940			11923	5627	6746	6746	15176	15176					0.010311570607996146
GTASPVANR	9	Unmodified	_GTASPVANR_					0	0	0		nc|ENSG00000162897|Q8WWV6-4|FCAMR;nc|ENSG00000162897|Q8WWV6|FCAMR;nc|ENSG00000162897|Q8WWV6-5|FCAMR;ENSG00000162897|ENST00000324852|FCAMR	nc|ENSG00000162897|Q8WWV6-4|FCAMR	nc|ENSG00000162897|Q8WWV6-4|FCAMR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.73272705078125	2	436.732866	871.451179	-0.30988	-0.00013533	0.18535	8.0949E-05	-0.12453	-5.4384E-05	436.73288684880293	14.813	0.52982	14.748	14.511	15.041	-0.064413					32	18	2	0	0	0	0.03069	1	847	847		60.074	8.4441	1	314110			11924	5627	6746	6746	15177	15177					0.010311570607996146
GTASSVSYPK	10	Unmodified	_GTASSVSYPK_					0	0	0		ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7536926269531	2	498.753464	995.492375	0.15088	7.5254E-05	0.21406	0.00010676	0.36494	0.00018201	498.75354594139634	23.13	0.71195	23.13	22.736	23.448	0					43	24	2	0	0	0	0.17571	2	3331	3331;3412		35.612	18.499	1	117490			11925	6975	6747	6747	15178;15179	15178					-0.0055512669038080276
GTASSVSYPK	10	Unmodified	_GTASSVSYPK_					0	0	0		ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.75341796875	2	498.753464	995.492375	0.18544	9.2487E-05	0.073228	3.6523E-05	0.25866	0.00012901	498.75342694755625	23.238	0.74886	23.15	22.658	23.407	-0.087608					56	26	3	0	0	0	0.26354	1	3422	3422		24.882	15.498	1	139630			11926	6975	6747	6747	15180	15180					-0.0055512669038080276
GTASSVSYPK	10	Unmodified	_GTASSVSYPK_					0	0	0		ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7531433105469	2	498.753464	995.492375	0.30175	0.0001505	-0.20319	-0.00010134	0.098561	4.9158E-05	498.753302293935	23.217	0.79133	23.172	22.709	23.5	-0.044867					46	28	2	0	0	0	0.12628	1	3378	3378		42.312	25.2	1	156240			11927	6975	6747	6747	15181	15181					-0.0055512669038080276
GTASVLQPVK	10	Unmodified	_GTASVLQPVK_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2957458496094	2	500.295299	998.576045	0.64818	0.00032428	-0.49523	-0.00024776	0.15295	7.6522E-05	500.2949179799389	32.43	0.54152	32.43	32.091	32.633	0					33	19	2	0	0	0	0.084702	1	6192	6192		51.415	20.147	1	196520			11928	8053	6748	6748	15182	15182					0.07670029477333173
GTASVLQPVK	10	Unmodified	_GTASVLQPVK_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	500.295299	998.576045	0.37471	0.00018747	-0.30619	-0.00015318	0.068526	3.4283E-05	500.29496970315955	32.222	0.60959	32.276	31.994	32.603	0.054375	-0.016604	0.00019899	NaN	51.415	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227730			11929	8053	6748	6748							0.07670029477333173
GTASVLQPVKK	11	Unmodified	_GTASVLQPVKK_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3429565429688	2	564.342781	1126.67101	0.14303	8.0719E-05	-0.36319	-0.00020497	-0.22016	-0.00012425	564.3427120327972	23.914	0.52438	23.914	23.669	24.194	0					39	17	3	0	0	0	0.25774	1	3574	3574		26.021	13.78	1	144270			11930	8053	6749	6749	15183	15183					0.11273962948507688
GTASVLQPVKK	11	Unmodified	_GTASVLQPVKK_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3432006835938	2	564.342781	1126.67101	0.328	0.00018511	0.11105	6.2668E-05	0.43905	0.00024778	564.3428824195976	24.008	0.53341	23.935	23.7	24.234	-0.072559					39	17	3	0	0	0	0.056067	2	3613	3613;3667		51.488	36.24	1	144090			11931	8053	6749	6749	15184;15185	15184					0.11273962948507688
GTASVLQPVKK	11	Unmodified	_GTASVLQPVKK_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.3432006835938	2	564.342781	1126.67101	0.30876	0.00017425	0.12298	6.9402E-05	0.43174	0.00024365	564.3427892463336	23.977	0.54115	23.938	23.737	24.278	-0.038927					39	18	3	0	0	0	0.15094	1	3617	3617		35.612	20.364	1	154970			11932	8053	6749	6749	15186	15186					0.11273962948507688
GTATFFLPY	9	Unmodified	_GTATFFLPY_					0	0	0		ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.72723388671875	2	508.758018	1015.50148	0.29621	0.0001507	-0.29556	-0.00015037	0.00065154	3.3148E-07	508.7574703802276	80.802	0.49118	80.802	80.569	81.06	0					35	23	2	0	0	0	0.12846	1	20992	20992		44.407	14.182	1	228920			11933	5727	6750	6750	15187	15187					-0.005647333340448313
GTATFFLPY	9	Unmodified	_GTATFFLPY_					0	0	0		ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.72735595703125	2	508.758018	1015.50148	0.27811	0.00014149	-0.41725	-0.00021228	-0.13914	-7.0788E-05	508.7575250914845	80.846	0.60498	80.819	80.573	81.178	-0.026825					34	24	2	0	0	0	0.12846	1	20994	20994		44.407	14.182	1	125890			11934	5727	6750	6750	15188	15188					-0.005647333340448313
GTATPELPTQG	11	Unmodified	_GTATPELPTQG_					0	0	0		CD34|p.V120Afs*20|1|0.02|ENSG00000174059|chr1:207899130-207899131|-/AAAATGG|frameshift_variant;nc|ENSG00000174059|P28906-2|CD34;ENSG00000174059|ENST00000310833|CD34	CD34|p.V120Afs*20|1|0.02|ENSG00000174059|chr1:207899130-207899131|-/AAAATGG|frameshift_variant	CD34|p.V120Afs*20|1|0.02|ENSG00000174059|chr1:207899130-207899131|-/AAAATGG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2696533203125	2	536.269478	1070.5244	0.4545	0.00024373	0.16026	8.594E-05	0.61476	0.00032967	536.2695051128377	21.816	0.70723	21.816	21.545	22.252	0					55	25	3	0	0	0	0.2981	1	2951	2951		27.223	2.2323	1	354440			11935	99	6751	6751	15189	15189					-0.008037590072490275
GTATPELPTQG	11	Unmodified	_GTATPELPTQG_					0	0	0		CD34|p.V120Afs*20|1|0.02|ENSG00000174059|chr1:207899130-207899131|-/AAAATGG|frameshift_variant;nc|ENSG00000174059|P28906-2|CD34;ENSG00000174059|ENST00000310833|CD34	CD34|p.V120Afs*20|1|0.02|ENSG00000174059|chr1:207899130-207899131|-/AAAATGG|frameshift_variant	CD34|p.V120Afs*20|1|0.02|ENSG00000174059|chr1:207899130-207899131|-/AAAATGG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2698974609375	2	536.269478	1070.5244	0.39341	0.00021097	0.34077	0.00018274	0.73418	0.00039372	536.2695604091559	21.855	0.59798	21.754	21.528	22.125	-0.10034					46	21	3	0	0	0	0.2981	1	2974	2974		27.223	2.2323	1	337270			11936	99	6751	6751	15190	15190					-0.008037590072490275
GTATPELPTQG	11	Unmodified	_GTATPELPTQG_					0	0	0		CD34|p.V120Afs*20|1|0.02|ENSG00000174059|chr1:207899130-207899131|-/AAAATGG|frameshift_variant;nc|ENSG00000174059|P28906-2|CD34;ENSG00000174059|ENST00000310833|CD34	CD34|p.V120Afs*20|1|0.02|ENSG00000174059|chr1:207899130-207899131|-/AAAATGG|frameshift_variant	CD34|p.V120Afs*20|1|0.02|ENSG00000174059|chr1:207899130-207899131|-/AAAATGG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2696533203125	2	536.269478	1070.5244	0.40119	0.00021515	0.21491	0.00011525	0.6161	0.0003304	536.2694677385981	21.789	0.68561	21.739	21.492	22.178	-0.049377					57	24	4	0	0	0	0.2981	1	2947	2947		27.223	2.2323	1	365990			11937	99	6751	6751	15191	15191					-0.008037590072490275
GTATVLVTL	9	Unmodified	_GTATVLVTL_					0	0	0		nc|ENSG00000179776|P33151-2|CDH5;ENSG00000179776|ENST00000341529|CDH5	nc|ENSG00000179776|P33151-2|CDH5	nc|ENSG00000179776|P33151-2|CDH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.7657470703125	2	437.765843	873.517133	0.14589	6.3867E-05	-0.052447	-2.2959E-05	0.093447	4.0908E-05	437.76571496843775	57.023	0.72321	57.023	56.772	57.495	0					55	26	3	0	0	0	0.0015545	1	13733	13733		115.69	41.269	1	614840			11938	7143	6752	6752	15192	15192					0.0753155318300287
GTATVLVTL	9	Unmodified	_GTATVLVTL_					0	0	0		nc|ENSG00000179776|P33151-2|CDH5;ENSG00000179776|ENST00000341529|CDH5	nc|ENSG00000179776|P33151-2|CDH5	nc|ENSG00000179776|P33151-2|CDH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.76580810546875	2	437.765843	873.517133	0.061003	2.6705E-05	-0.20954	-9.1731E-05	-0.14854	-6.5026E-05	437.76568127701137	56.946	0.62785	57.025	56.802	57.43	0.078674					52	22	3	0	0	0	0.01083	1	13704	13704		78.149	7.0158	1	700710			11939	7143	6752	6752	15193	15193					0.0753155318300287
GTATVLVTL	9	Unmodified	_GTATVLVTL_					0	0	0		nc|ENSG00000179776|P33151-2|CDH5;ENSG00000179776|ENST00000341529|CDH5	nc|ENSG00000179776|P33151-2|CDH5	nc|ENSG00000179776|P33151-2|CDH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.7657165527344	2	437.765843	873.517133	0.18694	8.1835E-05	-0.28534	-0.00012491	-0.098403	-4.3078E-05	437.76564970591454	57.015	0.58128	56.996	56.754	57.335	-0.019081					40	20	3	0	0	0	0.006189	1	13717	13717		85.272	10.849	1	790550			11940	7143	6752	6752	15194	15194					0.0753155318300287
GTAWRDYISI	10	Unmodified	_GTAWRDYISI_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8063354492188	2	591.301113	1180.58767	0.35812	0.00021175	-0.16635	-9.8364E-05	0.19176	0.00011339	591.3010874676795	42.362	0.65379	42.447	42.18	42.834	0.085201					46	23	3	0	0	0	0.31745	1	9323	9323		8.7454	0.58988	1	966050			11941	3416	6753	6753	15195	15195					0.004602265006496964
GTAYGNALIK	10	Unmodified	_GTAYGNALIK_					0	0	0		nc|ENSG00000097033|Q9Y371-3|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-2|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.76947021484375	2	504.279649	1006.54475	0.44465	0.00022423	0.81384	0.0004104	1.2585	0.00063463	504.279923549896	35.799	0.16337	35.799	35.719	35.882	0					10	5	3	0	0	0	0.31581	1	7200	7200		11.495	1.4208	1	101310			11942	1473	6754	6754	15196	15196					0.0417345644324314
GTAYQREKMF	10	Unmodified	_GTAYQREKMF_					0	0	0		ENSG00000079393|ENST00000478873|DUSP13	ENSG00000079393|ENST00000478873|DUSP13	ENSG00000079393|ENST00000478873|DUSP13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2271423339844	3	410.869374	1229.58629	-0.19182	-7.8814E-05	3.6266	0.0014901	3.4348	0.0014112	411.2048256630623	23.883	0.37457	23.883	23.542	23.917	0					16	12	2	0	0	0	0.31746	1	3507	3507		9.544	0	1	26770			11943	1133	6755	6755	15197	15197					-0.019317308597464944
GTDEYFIRK	9	Unmodified	_GTDEYFIRK_					0	0	0		ENST00000573209.1_1_17:7350776-7358776:+|nuORF;nc|ENSG00000170175|P11230-2|CHRNB1;ENSG00000170175|ENST00000306071|CHRNB1	ENST00000573209.1_1_17:7350776-7358776:+|nuORF	ENST00000573209.1_1_17:7350776-7358776:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.788330078125	2	564.787838	1127.56112	0.27536	0.00015552	-1.1731	-0.00066253	-0.89769	-0.00050701	564.7877819874146	30.766	0.5602	30.766	30.418	30.979	0					41	19	3	0	0	0	0.25112	1	5669	5669		16.149	9.795	1	162760			11944	6428	6756	6756	15198	15198					0.002445376093419327
GTDEYFIRK	9	Unmodified	_GTDEYFIRK_					0	0	0		ENST00000573209.1_1_17:7350776-7358776:+|nuORF;nc|ENSG00000170175|P11230-2|CHRNB1;ENSG00000170175|ENST00000306071|CHRNB1	ENST00000573209.1_1_17:7350776-7358776:+|nuORF	ENST00000573209.1_1_17:7350776-7358776:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.7880859375	2	564.787838	1127.56112	0.053238	3.0068E-05	-2.0082	-0.0011342	-1.955	-0.0011042	564.7874276040553	30.672	0.61016	30.699	30.364	30.975	0.027159					48	21	3	0	0	0	0.21447	1	5630	5630		21.537	14.248	1	173260			11945	6428	6756	6756	15199	15199					0.002445376093419327
GTDFPDPKVKK	11	Unmodified	_GTDFPDPKVKK_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6;ENST00000474239.1_1_1:11724615-11732081:+|nuORF	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2274475097656	3	411.227556	1230.66084	-0.19522	-8.0282E-05	0.37116	0.00015263	0.17594	7.235E-05	411.22766403694914	23.788	1.4306	23.788	22.936	24.367	0					136	49	4	0	0	0	0.1889	1	3554	3554		38.559	14.595	1	503500			11946	2735	6757	6757	15200	15200					0.05473355223261933
GTDFPDPKVKK	11	Unmodified	_GTDFPDPKVKK_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6;ENST00000474239.1_1_1:11724615-11732081:+|nuORF	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.22735595703125	3	411.227556	1230.66084	0.092864	3.8188E-05	-0.16789	-6.9041E-05	-0.075026	-3.0853E-05	411.22750899742715	23.869	1.6579	23.796	22.898	24.555	-0.072557					169	57	4	0	0	0	0.11813	5	3630	3534;3586;3630;3640;3678		38.559	16.852	1	480880			11947	2735	6757	6757	15201;15202;15203;15204;15205	15203					0.05473355223261933
GTDFPDPKVKK	11	Unmodified	_GTDFPDPKVKK_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6;ENST00000474239.1_1_1:11724615-11732081:+|nuORF	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.22705078125	3	411.227556	1230.66084	0.18902	7.773E-05	-0.26822	-0.0001103	-0.0792	-3.2569E-05	411.2274420559516	23.923	1.4385	23.884	23.01	24.448	-0.038927					149	50	4	0	0	0	0.14514	1	3580	3580		38.559	14.595	1	509780			11948	2735	6757	6757	15206	15206					0.05473355223261933
GTDPISQTK	9	Unmodified	_GTDPISQTK_					0	0	0		nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4	nc|ENSG00000137171|Q9NSK0-5|KLC4	nc|ENSG00000137171|Q9NSK0-5|KLC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7455139160156	2	473.745639	945.476725	-0.058176	-2.7561E-05	-0.63027	-0.00029859	-0.68844	-0.00032615	473.7452818114242	18.615	0.76217	18.615	18.363	19.125	0					61	26	3	0	0	0	0.07848	2	1979	1979;2032		42.312	19.576	1	227200			11949	4032	6758	6758	15207;15208	15207					0.0018058679256682808
GTDPISQTK	9	Unmodified	_GTDPISQTK_					0	0	0		nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4	nc|ENSG00000137171|Q9NSK0-5|KLC4	nc|ENSG00000137171|Q9NSK0-5|KLC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.74542236328125	2	473.745639	945.476725	0.037942	1.7975E-05	-0.60424	-0.00028626	-0.5663	-0.00026828	473.7452880630293	18.807	0.78615	18.689	18.358	19.144	-0.11739					65	27	3	0	0	0	0.063898	3	2057	2012;2057;2105		47.732	20.103	1	229870			11950	4032	6758	6758	15209;15210;15211	15210					0.0018058679256682808
GTDPISQTK	9	Unmodified	_GTDPISQTK_					0	0	0		nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4	nc|ENSG00000137171|Q9NSK0-5|KLC4	nc|ENSG00000137171|Q9NSK0-5|KLC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.745361328125	2	473.745639	945.476725	-0.091657	-4.3422E-05	-0.47596	-0.00022548	-0.56762	-0.00026891	473.7452852712758	18.777	0.90315	18.719	18.432	19.335	-0.058172					67	31	3	0	0	0	0.083138	1	2015	2015		40.725	17.989	1	253860			11951	4032	6758	6758	15212	15212					0.0018058679256682808
GTDRTGFTFK	10	Unmodified	_GTDRTGFTFK_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.28564453125	2	565.285463	1128.55637	0.45295	0.00025605	-0.181	-0.00010231	0.27196	0.00015373	565.2853127921769	29.504	0.77669	29.504	29.193	29.97	0					79	27	4	0	0	0	0.057019	2	5258	5258;5306		57.477	38.115	1	1035800			11952	1562	6759	6759	15213;15214	15213					-0.002763465334282955
GTDRTGFTFK	10	Unmodified	_GTDRTGFTFK_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.28564453125	2	565.285463	1128.55637	0.41073	0.00023218	0.03511	1.9847E-05	0.44584	0.00025203	565.2853770913706	29.419	1.0122	29.431	29.161	30.173	0.012266					69	34	3	0	0	0	0.022722	3	5298	5249;5298;5353		68.76	37.492	1	1111200			11953	1562	6759	6759	15215;15216;15217	15216					-0.002763465334282955
GTDRTGFTFK	10	Unmodified	_GTDRTGFTFK_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.28564453125	2	565.285463	1128.55637	0.065145	3.6826E-05	0.42523	0.00024038	0.49038	0.0002772	565.2855967327856	29.481	0.90004	29.494	29.22	30.12	0.013474					78	30	4	0	0	0	0.019209	2	5262	5262;5311		72.59	41.321	1	1182800			11954	1562	6759	6759	15218;15219	15218					-0.002763465334282955
GTDSHLVVK	9	Unmodified	_GTDSHLVVK_					0	0	0		nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-5|ARAP1;ENST00000544958.5_1_11:72404190-72406109:-|nuORF;ENST00000465814.5_1_11:72396711-72407721:-|nuORF	nc|ENSG00000186635|Q96P48-2|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2638244628906	2	478.263999	954.513445	0.10813	5.1715E-05	0.4646	0.0002222	0.57273	0.00027392	478.2640081493868	17.633	0.82047	17.633	17.396	18.216	0					61	27	3	0	0	0	0.037019	1	1685	1685		57.722	23.62	1	234480			11955	7631	6760	6760	15220	15220					0.034368834091424105
GTDSHLVVK	9	Unmodified	_GTDSHLVVK_					0	0	0		nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-5|ARAP1;ENST00000544958.5_1_11:72404190-72406109:-|nuORF;ENST00000465814.5_1_11:72396711-72407721:-|nuORF	nc|ENSG00000186635|Q96P48-2|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.26397705078125	2	478.263999	954.513445	0.055777	2.6676E-05	0.02793	1.3358E-05	0.083707	4.0034E-05	478.2639651912016	17.755	0.7096	17.637	17.441	18.151	-0.11739					41	24	2	0	0	0	0.026579	1	1741	1741		61.602	23.628	1	263520			11956	7631	6760	6760	15221	15221					0.034368834091424105
GTDSHLVVK	9	Unmodified	_GTDSHLVVK_					0	0	0		nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-5|ARAP1;ENST00000544958.5_1_11:72404190-72406109:-|nuORF;ENST00000465814.5_1_11:72396711-72407721:-|nuORF	nc|ENSG00000186635|Q96P48-2|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.263916015625	2	478.263999	954.513445	0.13945	6.6692E-05	-0.20197	-9.6594E-05	-0.062521	-2.9901E-05	478.26384009332173	17.727	0.69855	17.667	17.444	18.142	-0.060431					53	24	3	0	0	0	0.020233	1	1725	1725		63.961	29.858	1	232940			11957	7631	6760	6760	15222	15222					0.034368834091424105
GTDTNFEVK	9	Unmodified	_GTDTNFEVK_					0	0	0		ENST00000571541.5_1_17:7293706-7296729:-|nuORF;ENSG00000187838|ENST00000619711|PLSCR3	ENST00000571541.5_1_17:7293706-7296729:-|nuORF	ENST00000571541.5_1_17:7293706-7296729:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.74310302734375	2	505.743096	1009.47164	-0.037184	-1.8805E-05	-0.93271	-0.00047171	-0.9699	-0.00049052	505.742940416202	27.963	0.5064	27.963	27.7	28.207	0					31	17	2	0	0	0	0.016571	1	4815	4815		69.338	34.936	1	178430			11958	7715	6761	6761	15223	15223					-0.03271717070037994
GTDTNFEVK	9	Unmodified	_GTDTNFEVK_					0	0	0		ENST00000571541.5_1_17:7293706-7296729:-|nuORF;ENSG00000187838|ENST00000619711|PLSCR3	ENST00000571541.5_1_17:7293706-7296729:-|nuORF	ENST00000571541.5_1_17:7293706-7296729:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.74322509765625	2	505.743096	1009.47164	-0.033965	-1.7177E-05	-0.98595	-0.00049864	-1.0199	-0.00051581	505.74284224040497	27.995	0.6226	27.991	27.711	28.333	-0.0042572					34	21	2	0	0	0	0.09758	1	4847	4847		38.615	7.3464	1	193480			11959	7715	6761	6761	15224	15224					-0.03271717070037994
GTDTNFEVK	9	Unmodified	_GTDTNFEVK_					0	0	0		ENST00000571541.5_1_17:7293706-7296729:-|nuORF;ENSG00000187838|ENST00000619711|PLSCR3	ENST00000571541.5_1_17:7293706-7296729:-|nuORF	ENST00000571541.5_1_17:7293706-7296729:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.74298095703125	2	505.743096	1009.47164	-0.10295	-5.2066E-05	-1.0459	-0.00052896	-1.1489	-0.00058103	505.74289870119225	27.935	0.58224	27.936	27.739	28.322	0.0004673					36	20	2	0	0	0	0.10763	1	4799	4799		55.235	24.598	1	193450			11960	7715	6761	6761	15225	15225					-0.03271717070037994
GTEEAPKVFK	10	Unmodified	_GTEEAPKVFK_					0	0	0		nc|ENSG00000171204|Q8IUX1-4|TMEM126B;nc|ENSG00000171204|Q8IUX1-2|TMEM126B;ENSG00000171204|ENST00000358867|TMEM126B	nc|ENSG00000171204|Q8IUX1-4|TMEM126B	nc|ENSG00000171204|Q8IUX1-4|TMEM126B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.2981567382812	2	553.298039	1104.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.877	1	25.877	25.377	26.377	0								0	0	0	0.37807	1	4183	4183		2.9952	0	1				11961	6524	6762	6762	15226	15226					0.03341708269135779
GTEEAPKVFK	10	Unmodified	_GTEEAPKVFK_					0	0	0		nc|ENSG00000171204|Q8IUX1-4|TMEM126B;nc|ENSG00000171204|Q8IUX1-2|TMEM126B;ENSG00000171204|ENST00000358867|TMEM126B	nc|ENSG00000171204|Q8IUX1-4|TMEM126B	nc|ENSG00000171204|Q8IUX1-4|TMEM126B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.2980346679688	2	553.298039	1104.58152	0.104	5.7545E-05	0.17166	9.498E-05	0.27566	0.00015252	553.297912778123	25.793	0.40161	25.754	25.556	25.957	-0.038671					18	13	2	0	0	0	0.29048	1	4183	4183		21.59	13.981	1	157640			11962	6524	6762	6762	15227	15227					0.03341708269135779
GTEEAPKVFK	10	Unmodified	_GTEEAPKVFK_					0	0	0		nc|ENSG00000171204|Q8IUX1-4|TMEM126B;nc|ENSG00000171204|Q8IUX1-2|TMEM126B;ENSG00000171204|ENST00000358867|TMEM126B	nc|ENSG00000171204|Q8IUX1-4|TMEM126B	nc|ENSG00000171204|Q8IUX1-4|TMEM126B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	553.298039	1104.58152	0.11331	6.2692E-05	0.24615	0.0001362	0.35946	0.00019889	553.2978411219697	25.767	0.39082	25.744	25.579	25.97	-0.022236	-0.0049575	6.2884E-05	NaN	21.59	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140070			11963	6524	6762	6762							0.03341708269135779
GTEEGQQILK	10	Unmodified	_GTEEGQQILK_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;ENST00000537905.5_1_11:71735188-71747007:-|nuORF;ENST00000534971.1_1_11:71733276-71735881:-|nuORF;ENST00000534987.5_1_11:71728600-71747007:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7908935546875	2	551.790578	1101.5666	0.12608	6.9571E-05	-0.1909	-0.00010534	-0.064815	-3.5764E-05	551.7904456054999	27.595	0.39922	27.595	27.441	27.84	0					21	13	2	0	0	0	0.324	1	4731	4731		17.443	0.50035	1	92234			11964	4052	6763	6763	15228	15228					0.01988216401127829
GTEEGQQILK	10	Unmodified	_GTEEGQQILK_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;ENST00000537905.5_1_11:71735188-71747007:-|nuORF;ENST00000534971.1_1_11:71733276-71735881:-|nuORF;ENST00000534987.5_1_11:71728600-71747007:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7560424804688	2	551.790578	1101.5666	0.11335	6.2547E-05	0.13871	7.6537E-05	0.25206	0.00013908	551.7904193375654	27.637	0.28223	27.616	27.437	27.72	-0.02141					16	9	2	0	0	0	0.29144	1	4739	4739		26.021	9.0784	1	96488			11965	4052	6763	6763	15229	15229					0.01988216401127829
GTEFGGSIYQK	11	Unmodified	_GTEFGGSIYQK_					0	0	0		ENST00000489906.5_1_5:133308464-133311792:-|nuORF;ENSG00000213585|ENST00000265333|VDAC1;nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2	ENST00000489906.5_1_5:133308464-133311792:-|nuORF	ENST00000489906.5_1_5:133308464-133311792:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.7908935546875	2	593.790578	1185.5666	0.74607	0.00044301	-0.27005	-0.00016035	0.47602	0.00028266	593.7903769598786	37.601	1.3383	37.601	37.285	38.623	0					147	47	5	0	0	0	1.5609999999999999E-44	3	7761	7716;7761;7806		253.32	203.77	1	13008000			11966	8352	6764	6764	15230;15231;15232	15231					-0.018757835988935767
GTEFGGSIYQK	11	Unmodified	_GTEFGGSIYQK_					0	0	0		ENST00000489906.5_1_5:133308464-133311792:-|nuORF;ENSG00000213585|ENST00000265333|VDAC1;nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2	ENST00000489906.5_1_5:133308464-133311792:-|nuORF	ENST00000489906.5_1_5:133308464-133311792:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.7908935546875	2	593.790578	1185.5666	0.5111	0.00030348	-0.052223	-3.101E-05	0.45887	0.00027247	593.7905339090239	37.528	1.2861	37.615	37.305	38.591	0.08741					143	46	5	0	0	0	1.5609999999999999E-44	3	7738	7692;7738;7781		253.32	205.57	1	12207000			11967	8352	6764	6764	15233;15234;15235	15234					-0.018757835988935767
GTEFGGSIYQK	11	Unmodified	_GTEFGGSIYQK_					0	0	0		ENST00000489906.5_1_5:133308464-133311792:-|nuORF;ENSG00000213585|ENST00000265333|VDAC1;nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2	ENST00000489906.5_1_5:133308464-133311792:-|nuORF	ENST00000489906.5_1_5:133308464-133311792:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.790771484375	2	593.790578	1185.5666	0.41782	0.0002481	0.051599	3.0639E-05	0.46942	0.00027874	593.7906035534049	37.465	1.3698	37.558	37.275	38.645	0.093014					150	49	5	0	0	0	3.4647E-45	3	7711	7669;7711;7761		268.64	219.09	1	13798000			11968	8352	6764	6764	15236;15237;15238	15237					-0.018757835988935767
GTFAIRLLK	9	Unmodified	_GTFAIRLLK_					0	0	0		ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8233947753906	2	509.824027	1017.6335	0.67848	0.0003459	-1.2466	-0.00063553	-0.5681	-0.00028963	509.8232782610213	47.889	0.45493	47.937	47.803	48.258	0.047523					28	16	2	0	0	0	0.022205	1	10930	10930		63.227	25.052	1	1198000			11969	6463	6765	6765	15239	15239					0.12538916473556583
GTFAIRLLK	9	Unmodified	_GTFAIRLLK_					0	0	0		ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8230895996094	2	509.824027	1017.6335	0.47969	0.00024456	-1.2582	-0.00064147	-0.77854	-0.00039692	509.8232498514132	47.879	0.57364	47.922	47.771	48.344	0.04332					30	21	2	0	0	0	0.043711	1	10922	10922		55.235	23.966	1	1600300			11970	6463	6765	6765	15240	15240					0.12538916473556583
GTFAIRLLK	9	Unmodified	_GTFAIRLLK_					0	0	0		ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	ENSG00000170542|ENST00000380698|SERPINB9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	509.824027	1017.6335	0.58642	0.00029897	-0.58031	-0.00029585	0.0061182	3.1192E-06	509.8234708461993	47.935	0.44035	47.935	47.797	48.238	0	0.003523	0.00056241	NaN	63.227	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1225000			11971	6463	6765	6765							0.12538916473556583
GTFANIKLFNK	11	Unmodified	_GTFANIKLFNK_					0	0	0		ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.23974609375	3	418.239796	1251.69756	0.12457	5.2099E-05	-0.1807	-7.5575E-05	-0.056129	-2.3475E-05	418.239651811367	50.196	0.84281	50.196	49.923	50.766	0					105	30	5	0	0	0	0.0011487	3	11628	11578;11628;11679		94.801	79.062	1	4125000			11972	3973	6766	6766	15241;15242;15243	15242					0.08177651839810096
GTFANIKLFNK	11	Unmodified	_GTFANIKLFNK_					0	0	0		ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.8562622070312	2	626.856055	1251.69756	0.51697	0.00032407	-0.4766	-0.00029876	0.040372	2.5307E-05	626.855554192312	50.2	0.75005	50.2	49.819	50.569	0					73	27	4	0	0	0	3.5539E-18	3	11644	11590;11598;11644		238.63	190.88	1	1619900			11973	3973	6766	6766	15244;15245;15246	15246					0.08177651839810096
GTFANIKLFNK	11	Unmodified	_GTFANIKLFNK_					0	0	0		ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.856201171875	2	626.856055	1251.69756	0.50231	0.00031488	-0.3833	-0.00024027	0.11901	7.4603E-05	626.8555934172525	50.193	0.83152	50.238	49.85	50.682	0.044891					76	30	4	0	0	0	2.0038000000000002E-25	2	11605	11605;11653		268.64	235.86	1	1489300			11974	3973	6766	6766	15247;15248	15247					0.08177651839810096
GTFANIKLFNK	11	Unmodified	_GTFANIKLFNK_					0	0	0		ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.8563842773438	2	626.856055	1251.69756	0.69669	0.00043673	-0.63682	-0.00039919	0.059873	3.7531E-05	626.855509082149	50.184	0.91812	50.205	49.85	50.768	0.020691					84	33	4	0	0	0	4.4543E-18	2	11659	11610;11659		222.22	178.36	1	1526800			11975	3973	6766	6766	15249;15250	15250					0.08177651839810096
GTFDELLSK	9	Unmodified	_GTFDELLSK_					0	0	0		ENSG00000003989|ENST00000494857|SLC7A2;nc|ENSG00000003989|P52569-2|SLC7A2;nc|ENSG00000003989|P52569-3|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2773132324219	2	505.263665	1008.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.394	1	52.393	51.893	52.893	-0.00080872								0	0	0	0.21283	1	12288	12288		18.373	0.23811	1				11976	305	6767	6767	15251	15251					0.008860439694444722
GTFGATSLQQR	11	Unmodified	_GTFGATSLQQR_					0	0	0		ENST00000492039.6_1_2:68352461-68384592:-|nuORF;nc|ENSG00000243667|Q96MX6-2|DNAAF10;ENSG00000243667|ENST00000295121|DNAAF10	ENST00000492039.6_1_2:68352461-68384592:-|nuORF	ENST00000492039.6_1_2:68352461-68384592:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3021240234375	2	583.301644	1164.58874	-0.22091	-0.00012886	0.50391	0.00029393	0.283	0.00016507	583.3021027344395	34.377	0.34105	34.377	34.247	34.588	0					27	11	3	0	0	0	0.0010602	1	6786	6786		96.034	63.997	1	194030			11977	11188	6768	6768	15252	15252					0.013024408695855527
GTFGATSLQQR	11	Unmodified	_GTFGATSLQQR_					0	0	0		ENST00000492039.6_1_2:68352461-68384592:-|nuORF;nc|ENSG00000243667|Q96MX6-2|DNAAF10;ENSG00000243667|ENST00000295121|DNAAF10	ENST00000492039.6_1_2:68352461-68384592:-|nuORF	ENST00000492039.6_1_2:68352461-68384592:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.8023071289062	2	583.301644	1164.58874	-0.26409	-0.00015404	0.30021	0.00017511	0.036121	2.107E-05	583.3021063682884	34.278	0.52962	34.345	34.092	34.622	0.06636					38	18	3	0	0	0	0.00018352	1	6755	6755		108.26	78.421	1	170730			11978	11188	6768	6768	15253	15253					0.013024408695855527
GTFGATSLQQR	11	Unmodified	_GTFGATSLQQR_					0	0	0		ENST00000492039.6_1_2:68352461-68384592:-|nuORF;nc|ENSG00000243667|Q96MX6-2|DNAAF10;ENSG00000243667|ENST00000295121|DNAAF10	ENST00000492039.6_1_2:68352461-68384592:-|nuORF	ENST00000492039.6_1_2:68352461-68384592:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.302490234375	2	583.301644	1164.58874	0.085661	4.9966E-05	0.31734	0.0001851	0.403	0.00023507	583.3020365977281	34.199	0.39529	34.266	34.127	34.522	0.0667					25	13	2	0	0	0	0.0013351	1	6723	6723		92.201	58.756	1	197840			11979	11188	6768	6768	15254	15254					0.013024408695855527
GTFGGLGSK	9	Unmodified	_GTFGGLGSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2188720703125	2	412.21906	822.423567	-0.39983	-0.00016482	-0.03438	-1.4172E-05	-0.43421	-0.00017899	412.2189398461479	27.979	0.87572	27.979	27.673	28.548	0					48	30	2	0	0	0	0.0045319	2	4844	4796;4844		90.135	42.386	1	949700			11980	3189	6769	6769	15255;15256	15256					0.00525253800583414
GTFGGLGSK	9	Unmodified	_GTFGGLGSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.21881103515625	2	412.21906	822.423567	-0.11409	-4.7029E-05	-0.3211	-0.00013237	-0.43519	-0.00017939	412.2188096407073	27.972	0.99369	27.967	27.576	28.57	-0.0042572					53	35	2	0	0	0	0.0032746	1	4818	4818		100.09	40.017	1	1009000			11981	3189	6769	6769	15257	15257					0.00525253800583414
GTFGGLGSK	9	Unmodified	_GTFGGLGSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2187805175781	2	412.21906	822.423567	-0.24126	-9.9454E-05	-0.24921	-0.00010273	-0.49047	-0.00020218	412.2188545628608	27.956	0.69543	27.956	27.626	28.322	0.0004673					42	24	2	0	0	0	0.0016712	2	4802	4802;4846		114.2	54.128	1	1017500			11982	3189	6769	6769	15258;15259	15258					0.00525253800583414
GTFGKALRR	9	Unmodified	_GTFGKALRR_					0	0	0		ENST00000433272.6_1_12:59266356-59274151:-|nuORF;nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENSG00000139263|ENST00000320743|LRIG3	ENST00000433272.6_1_12:59266356-59274151:-|nuORF	ENST00000433272.6_1_12:59266356-59274151:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.3013610839844	2	503.30125	1004.58795	0.13182	6.6344E-05	-0.039075	-1.9667E-05	0.092742	4.6677E-05	503.30119780243234	17.961	0.63565	17.844	17.631	18.267	-0.11739					38	21	2	0	0	0	0.034444	1	1788	1788		58.679	28.454	1	475420			11983	4223	6770	6770	15260	15260					0.08583691011165229
GTFGKALRR	9	Unmodified	_GTFGKALRR_					0	0	0		ENST00000433272.6_1_12:59266356-59274151:-|nuORF;nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENSG00000139263|ENST00000320743|LRIG3	ENST00000433272.6_1_12:59266356-59274151:-|nuORF	ENST00000433272.6_1_12:59266356-59274151:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.3013000488281	2	503.30125	1004.58795	0.15344	7.7225E-05	-0.016972	-8.542E-06	0.13647	6.8683E-05	503.3012172638585	17.962	0.75216	17.901	17.618	18.37	-0.060429					44	26	2	0	0	0	0.063853	1	1776	1776		47.749	11.704	1	366400			11984	4223	6770	6770	15261	15261					0.08583691011165229
GTFKFLRIYK	10	Unmodified	_GTFKFLRIYK_					0	0	0		ENST00000500268.6_1_4:10455867-10456122:-|nuORF	ENST00000500268.6_1_4:10455867-10456122:-|nuORF	ENST00000500268.6_1_4:10455867-10456122:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.920166015625	3	424.920286	1271.73903	0.26678	0.00011336	0.15112	6.4216E-05	0.4179	0.00017758	424.9200638858221	45.604	0.60349	45.604	45.341	45.945	0					55	21	3	0	0	0	0.19311	1	10244	10244		37.771	24.915	1	573730			11985	11265	6771	6771	15262	15262					0.11402832599173962
GTFKFLRIYK	10	Unmodified	_GTFKFLRIYK_					0	0	0		ENST00000500268.6_1_4:10455867-10456122:-|nuORF	ENST00000500268.6_1_4:10455867-10456122:-|nuORF	ENST00000500268.6_1_4:10455867-10456122:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.9200439453125	3	424.920286	1271.73903	0.12826	5.4501E-05	0.073091	3.1058E-05	0.20135	8.5558E-05	424.9201019543462	45.273	0.92555	45.339	44.814	45.74	0.065918					59	32	3	0	0	0	0.12791	1	10111	10111		30.431	18.8	1	813290			11986	11265	6771	6771	15263	15263					0.11402832599173962
GTFKFLRIYK	10	Unmodified	_GTFKFLRIYK_					0	0	0		ENST00000500268.6_1_4:10455867-10456122:-|nuORF	ENST00000500268.6_1_4:10455867-10456122:-|nuORF	ENST00000500268.6_1_4:10455867-10456122:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.920166015625	3	424.920286	1271.73903	0.073287	3.1141E-05	0.13366	5.6793E-05	0.20694	8.7935E-05	424.92014404126365	45.299	0.82214	45.364	44.825	45.647	0.065048					77	30	4	0	0	0	0.15473	1	10087	10087		32.898	21.266	1	764040			11987	11265	6771	6771	15264	15264					0.11402832599173962
GTFLEGVAK	9	Unmodified	_GTFLEGVAK_					0	0	0		nc|ENSG00000174886|Q86Y39-2|NDUFA11;ENST00000593233.1_1_19:5894755-5901370:-|nuORF;ENSG00000174886|ENST00000308961|NDUFA11	nc|ENSG00000174886|Q86Y39-2|NDUFA11	nc|ENSG00000174886|Q86Y39-2|NDUFA11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.2556457519531	2	461.255643	920.496732	-0.17436	-8.0425E-05	0.23434	0.00010809	0.059974	2.7663E-05	461.25574470061116	41.081	0.81657	41.081	40.714	41.531	0					89	29	4	0	0	0	3.0646E-11	2	8830	8784;8830		193.29	41.776	1	7523800			11988	12847	6772	6772	15265;15266	15266					0.0333038252319966
GTFLEGVAK	9	Unmodified	_GTFLEGVAK_					0	0	0		nc|ENSG00000174886|Q86Y39-2|NDUFA11;ENST00000593233.1_1_19:5894755-5901370:-|nuORF;ENSG00000174886|ENST00000308961|NDUFA11	nc|ENSG00000174886|Q86Y39-2|NDUFA11	nc|ENSG00000174886|Q86Y39-2|NDUFA11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.255615234375	2	461.255643	920.496732	0.12869	5.9358E-05	-0.16643	-7.6765E-05	-0.037737	-1.7406E-05	461.2555720323473	40.853	0.84699	40.946	40.637	41.484	0.092674					84	31	4	0	0	0	2.4752E-08	3	8752	8706;8752;8801		179.17	54.895	1	7260400			11989	12847	6772	6772	15267;15268;15269	15268					0.0333038252319966
GTFLEGVAK	9	Unmodified	_GTFLEGVAK_					0	0	0		nc|ENSG00000174886|Q86Y39-2|NDUFA11;ENST00000593233.1_1_19:5894755-5901370:-|nuORF;ENSG00000174886|ENST00000308961|NDUFA11	nc|ENSG00000174886|Q86Y39-2|NDUFA11	nc|ENSG00000174886|Q86Y39-2|NDUFA11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.2556457519531	2	461.255643	920.496732	0.012632	5.8266E-06	-0.017699	-8.1636E-06	-0.0050666	-2.337E-06	461.2556435449789	40.804	0.80808	40.903	40.592	41.4	0.099403					78	29	4	0	0	0	2.4752E-08	2	8734	8691;8734		179.17	46.56	1	8221300			11990	12847	6772	6772	15270;15271	15271					0.0333038252319966
GTFNPEKGKQK	11	Unmodified	_GTFNPEKGKQK_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.890869140625	3	411.891055	1232.65134	-0.37613	-0.00015492	-0.139	-5.7253E-05	-0.51513	-0.00021218	411.8909975464992	13.456	0.78875	13.456	13.174	13.962	0					56	27	4	0	0	0	0.30282	1	428	428		29.291	15.073	1	341930			11991	851	6773	6773	15272	15272					0.04431586937744214
GTFNPEKGKQK	11	Unmodified	_GTFNPEKGKQK_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.89093017578125	3	411.891055	1232.65134	-0.1661	-6.8413E-05	-0.33628	-0.00013851	-0.50237	-0.00020692	411.8908433245579	13.535	0.77789	13.436	13.189	13.967	-0.099291					63	27	4	0	0	0	0.12256	1	457	457		38.161	27.845	1	392110			11992	851	6773	6773	15273	15273					0.04431586937744214
GTFNPEKGKQK	11	Unmodified	_GTFNPEKGKQK_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.8909606933594	3	411.891055	1232.65134	-0.22149	-9.1229E-05	-0.27434	-0.000113	-0.49583	-0.00020423	411.8909793384185	13.535	0.81984	13.467	13.215	14.035	-0.067496					62	28	4	0	0	0	0.19733	1	452	452		31.446	21.682	1	394060			11993	851	6773	6773	15274	15274					0.04431586937744214
GTFPGNYVK	9	Unmodified	_GTFPGNYVK_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-11|SORBS1;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;nc|ENSG00000095637|Q9BX66-3|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-4|SORBS1;nc|ENSG00000154556|O94875-12|SORBS2;nc|ENSG00000154556|O94875-10|SORBS2;nc|ENSG00000154556|O94875-4|SORBS2;nc|ENSG00000154556|O94875-2|SORBS2;nc|ENSG00000154556|O94875-8|SORBS2;nc|ENSG00000154556|O94875-3|SORBS2;nc|ENSG00000154556|O94875-9|SORBS2;ENST00000478461.1_1_4:186508783-186510953:-|nuORF;nc|ENSG00000154556|O94875-7|SORBS2;nc|ENSG00000154556|O94875|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;ENSG00000154556|ENST00000695409|SORBS2	nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000154556|O94875-7|SORBS2	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7537536621094	2	491.753267	981.491981	0.6127	0.0003013	-0.15375	-7.5605E-05	0.45895	0.00022569	491.75321451754	37.31	1.9559	37.31	36.756	38.711	0					142	69	3	0	0	0	0.12642	1	7665	7665		34.402	17.459	1	378660			11994	12607;5137	6774	6774	15275	15275					0.0004949838042875854
GTFPGNYVK	9	Unmodified	_GTFPGNYVK_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-11|SORBS1;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;nc|ENSG00000095637|Q9BX66-3|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-4|SORBS1;nc|ENSG00000154556|O94875-12|SORBS2;nc|ENSG00000154556|O94875-10|SORBS2;nc|ENSG00000154556|O94875-4|SORBS2;nc|ENSG00000154556|O94875-2|SORBS2;nc|ENSG00000154556|O94875-8|SORBS2;nc|ENSG00000154556|O94875-3|SORBS2;nc|ENSG00000154556|O94875-9|SORBS2;ENST00000478461.1_1_4:186508783-186510953:-|nuORF;nc|ENSG00000154556|O94875-7|SORBS2;nc|ENSG00000154556|O94875|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;ENSG00000154556|ENST00000695409|SORBS2	nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000154556|O94875-7|SORBS2	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.753173828125	2	491.753267	981.491981	0.42004	0.00020656	-0.17423	-8.5677E-05	0.24581	0.00012088	491.75326394721793	37.32	2.2863	37.407	36.682	38.968	0.087406					130	83	2	0	0	0	0.23007	1	7627	7627		19.257	5.3509	1	354950			11995	12607;5137	6774	6774	15276	15276					0.0004949838042875854
GTFPGNYVK	9	Unmodified	_GTFPGNYVK_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-11|SORBS1;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;nc|ENSG00000095637|Q9BX66-3|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-4|SORBS1;nc|ENSG00000154556|O94875-12|SORBS2;nc|ENSG00000154556|O94875-10|SORBS2;nc|ENSG00000154556|O94875-4|SORBS2;nc|ENSG00000154556|O94875-2|SORBS2;nc|ENSG00000154556|O94875-8|SORBS2;nc|ENSG00000154556|O94875-3|SORBS2;nc|ENSG00000154556|O94875-9|SORBS2;ENST00000478461.1_1_4:186508783-186510953:-|nuORF;nc|ENSG00000154556|O94875-7|SORBS2;nc|ENSG00000154556|O94875|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;ENSG00000154556|ENST00000695409|SORBS2	nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000154556|O94875-7|SORBS2	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.753267	981.491981	0.46777	0.00023003	-0.28519	-0.00014024	0.18258	8.9787E-05	491.7532235917505	37.088	2.0139	37.181	36.687	38.701	0.093018	-0.11845	-7.8797E-05	NaN	34.402	115	73	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310030			11996	12607;5137	6774	6774							0.0004949838042875854
GTFPRAFKK	9	Unmodified	_GTFPRAFKK_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3056030273438	2	526.306001	1050.59745	0.35962	0.00018927	-1.3185	-0.00069395	-0.95891	-0.00050468	526.3053554146445	22.063	0.94511	22.014	21.604	22.549	-0.049376					84	33	3	0	0	0	0.23007	1	3026	3026		19.257	1.1106	1	327360			11997	7604	6775	6775	15277	15277					0.07417459296698325
GTFPRAFKK	9	Unmodified	_GTFPRAFKK_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	526.306001	1050.59745	0.42881	0.00022568	-0.97508	-0.00051319	-0.54627	-0.00028751	526.3055634531842	22.105	0.77475	22.105	21.731	22.505	0	0.052043	0.0002149	NaN	19.257	74	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339610			11998	7604	6775	6775							0.07417459296698325
GTFPRAFKK	9	Unmodified	_GTFPRAFKK_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	526.306001	1050.59745	0.42645	0.00022444	-1.2988	-0.00068357	-0.87237	-0.00045913	526.305339227794	22.141	0.88747	22.041	21.584	22.471	-0.10034	-0.012616	-0.00012587	NaN	19.257	83	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318850			11999	7604	6775	6775							0.07417459296698325
GTFPRAFKKL	10	Unmodified	_GTFPRAFKKL_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.8480834960938	2	582.848033	1163.68151	0.52894	0.00030829	-0.32624	-0.00019015	0.2027	0.00011814	582.8478580687133	33.726	0.59727	33.726	33.426	34.023	0					48	21	3	0	0	0	0.23997	1	6582	6582		40.239	12.61	1	473750			12000	7604	6776	6776	15278	15278					0.10621990393610758
GTFPRAFKKL	10	Unmodified	_GTFPRAFKKL_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.8486938476562	2	582.848033	1163.68151	0.59902	0.00034914	-0.33588	-0.00019576	0.26314	0.00015337	582.8477428239016	33.526	0.57944	33.592	33.295	33.875	0.06636					50	20	3	0	0	0	0.23397	1	6549	6549		28.495	5.7582	1	554450			12001	7604	6776	6776	15279	15279					0.10621990393610758
GTFPRAFKKL	10	Unmodified	_GTFPRAFKKL_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.8479614257812	2	582.848033	1163.68151	0.15128	8.8175E-05	0.10872	6.3369E-05	0.26001	0.00015154	582.8479850109617	33.531	0.52185	33.597	33.358	33.879	0.0667					47	18	4	0	0	0	0.23397	1	6515	6515		28.495	2.2264	1	461290			12002	7604	6776	6776	15280	15280					0.10621990393610758
GTFQTTMTKL	10	Oxidation (M)	_GTFQTTM(Oxidation (M))TKL_		GTFQTTM(1)TKL		GTFQTTM(81)TKL	0	0	1		ENSG00000085719|ENST00000517490|CPNE3;ENST00000517862.1_1_8:87552529-87557099:+|nuORF	ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2894287109375	2	572.289356	1142.56416	-1.093	-0.00062549	0.82282	0.00047089	-0.27014	-0.0001546	572.2897452353379	34.968	0.4514	34.968	34.775	35.227	0					28	15	3	0	0	0	0.01159	1	6967	6967		80.896	57.106	1	164120			12003	1261	6777	6777	15281	15281		151			-0.0014195532817211642
GTFQTTMTKL	10	Oxidation (M)	_GTFQTTM(Oxidation (M))TKL_		GTFQTTM(1)TKL		GTFQTTM(53)TKL	0	0	1		ENSG00000085719|ENST00000517490|CPNE3;ENST00000517862.1_1_8:87552529-87557099:+|nuORF	ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2886962890625	2	572.289356	1142.56416	-0.73537	-0.00042084	-0.055564	-3.1799E-05	-0.79093	-0.00045264	572.2894737168393	34.837	0.43793	34.914	34.729	35.167	0.077377					25	15	2	0	0	0	0.075319	1	6936	6936		53.47	29.68	1	239330			12004	1261	6777	6777	15282	15282		151			-0.0014195532817211642
GTFQTTMTKL	10	Oxidation (M)	_GTFQTTM(Oxidation (M))TKL_					0	0	1		ENSG00000085719|ENST00000517490|CPNE3;ENST00000517862.1_1_8:87552529-87557099:+|nuORF	ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	572.289356	1142.56416	-1.074	-0.00061467	0.9994	0.00057195	-0.074644	-4.2718E-05	572.2897252355683	34.893	0.52194	34.969	34.713	35.234	0.075306	0.018264	0.00044263	NaN	80.896	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172500			12005	1261	6777	6777				151			-0.0014195532817211642
GTFSRLFQK	9	Unmodified	_GTFSRLFQK_					0	0	0		nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3013305664062	2	542.300916	1082.58728	0.37841	0.00020521	-0.24762	-0.00013429	0.13079	7.0927E-05	542.3008010130999	39.281	0.78009	39.373	39.137	39.917	0.09267					61	27	3	0	0	0	0.059987	1	8317	8317		61.602	27.2	1	703660			12006	12715	6778	6778	15283	15283					0.049288515714806636
GTFSRLFQK	9	Unmodified	_GTFSRLFQK_					0	0	0		nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3015747070312	2	542.300916	1082.58728	0.60023	0.00032551	-0.91503	-0.00049622	-0.3148	-0.00017071	542.3008435892131	39.36	0.94122	39.459	38.953	39.894	0.099407					67	33	3	0	0	0	0.059067	1	8312	8312		49.527	16.742	1	752290			12007	12715	6778	6778	15284	15284					0.049288515714806636
GTFTGEALQY	10	Unmodified	_GTFTGEALQY_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1;ENST00000498614.5_1_21:47421141-47423924:+|nuORF	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7593994140625	2	543.758746	1085.50294	0.76588	0.00041645	-0.25635	-0.00013939	0.50952	0.00027706	543.7588414707184	56.64	0.63092	56.719	56.41	57.04	0.078674					50	23	3	0	0	0	0.066034	1	13656	13656		55.503	17.327	1	818960			12008	4424	6779	6779	15285	15285					-0.03639144035946629
GTFTGEALQY	10	Unmodified	_GTFTGEALQY_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1;ENST00000498614.5_1_21:47421141-47423924:+|nuORF	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	543.758746	1085.50294	0.56039	0.00030472	0.14813	8.0549E-05	0.70853	0.00038527	543.7589987912637	56.774	0.6683	56.774	56.447	57.116	0	-0.018298	0.0002462	NaN	55.503	43	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	748940			12009	4424	6779	6779							-0.03639144035946629
GTFTGEALQY	10	Unmodified	_GTFTGEALQY_					0	0	0		ENSG00000142156|ENST00000361866|COL6A1;ENST00000498614.5_1_21:47421141-47423924:+|nuORF	ENSG00000142156|ENST00000361866|COL6A1	ENSG00000142156|ENST00000361866|COL6A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.758746	1085.50294	0.94143	0.00051191	-0.021118	-1.1483E-05	0.92031	0.00050043	543.7587776015449	56.902	0.61127	56.883	56.646	57.257	-0.019081	0.091426	6.2139E-05	NaN	55.503	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	883330			12010	4424	6779	6779							-0.03639144035946629
GTFVSPEVFLK	11	Unmodified	_GTFVSPEVFLK_					0	0	0		nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.33740234375	2	612.337164	1222.65977	0.54515	0.00033381	-0.40721	-0.00024935	0.13793	8.4463E-05	612.3367460313273	65.843	0.72302	65.843	65.488	66.211	0					44	25	2	0	0	0	0.21933	1	16466	16466		73.196	49.406	1	565690			12011	5879	6780	6780	15286	15286					0.05735140854358178
GTFVSPEVFLK	11	Unmodified	_GTFVSPEVFLK_					0	0	0		nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.3369750976562	2	612.337164	1222.65977	0.43953	0.00026914	-0.17955	-0.00010994	0.25998	0.0001592	612.3369601528356	65.72	0.70624	65.808	65.491	66.197	0.088882					45	25	2	0	0	0	0.24331	1	16406	16406		64.927	41.137	1	606420			12012	5879	6780	6780	15287	15287					0.05735140854358178
GTFVSPEVFLK	11	Unmodified	_GTFVSPEVFLK_					0	0	0		nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.3367919921875	2	612.337164	1222.65977	0.40345	0.00024705	-0.25636	-0.00015698	0.14709	9.0068E-05	612.3369076868671	65.839	0.74866	65.828	65.504	66.253	-0.011337					44	26	2	0	0	0	0.18539	1	16480	16480		39.213	20.84	1	504020			12013	5879	6780	6780	15288	15288					0.05735140854358178
GTGAFTTTK	9	Unmodified	_GTGAFTTTK_					0	0	0		nc|ENSG00000128487|Q5M775-2|SPECC1;SPECC1|p.S912Cfs*5|1|0.13|ENSG00000128487|chr17:20257503-20257504|-/TGCAAACATATAT|frameshift_variant;ENSG00000128487|ENST00000395527|SPECC1	nc|ENSG00000128487|Q5M775-2|SPECC1	nc|ENSG00000128487|Q5M775-2|SPECC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.2297058105469	2	442.229625	882.444697	-0.062594	-2.7681E-05	0.02982	1.3187E-05	-0.032773	-1.4493E-05	442.22962415871484	18.354	0.45797	18.237	18.012	18.47	-0.11739					24	15	2	0	0	0	0.33719	1	1937	1937		3.2813	0.97858	1	52933			12014	3369	6781	6781	15289	15289					-0.0012278089056962926
GTGAFTTTK	9	Unmodified	_GTGAFTTTK_					0	0	0		nc|ENSG00000128487|Q5M775-2|SPECC1;SPECC1|p.S912Cfs*5|1|0.13|ENSG00000128487|chr17:20257503-20257504|-/TGCAAACATATAT|frameshift_variant;ENSG00000128487|ENST00000395527|SPECC1	nc|ENSG00000128487|Q5M775-2|SPECC1	nc|ENSG00000128487|Q5M775-2|SPECC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2297668457031	2	442.229625	882.444697	-0.093976	-4.1559E-05	-0.079197	-3.5023E-05	-0.17317	-7.6582E-05	442.2294609500333	18.358	0.51314	18.3	18.087	18.6	-0.058174					26	17	3	0	0	0	0.25112	1	1920	1920		16.149	6.0752	1	69851			12015	3369	6781	6781	15290	15290					-0.0012278089056962926
GTGAFTTTK	9	Unmodified	_GTGAFTTTK_					0	0	0		nc|ENSG00000128487|Q5M775-2|SPECC1;SPECC1|p.S912Cfs*5|1|0.13|ENSG00000128487|chr17:20257503-20257504|-/TGCAAACATATAT|frameshift_variant;ENSG00000128487|ENST00000395527|SPECC1	nc|ENSG00000128487|Q5M775-2|SPECC1	nc|ENSG00000128487|Q5M775-2|SPECC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	442.229625	882.444697	0.06512	2.8798E-05	0.17424	7.7055E-05	0.23936	0.00010585	442.2296289378379	18.228	0.42632	18.228	18.024	18.451	0	-0.027006	0.00010206	NaN	16.149	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52201			12016	3369	6781	6781							-0.0012278089056962926
GTGALLGLSLY	11	Unmodified	_GTGALLGLSLY_					0	0	0		ENSG00000185561|ENST00000330676|TLCD2	ENSG00000185561|ENST00000330676|TLCD2	ENSG00000185561|ENST00000330676|TLCD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3112182617188	2	532.802957	1063.59136	0.27523	0.00014664	-0.086624	-4.6154E-05	0.1886	0.00010049	532.8029645580303	52.218	0.512	52.217	51.928	52.44	-0.00081253					47	18	3	0	0	0	0.21363	1	12219	12219		39.95	7.164	1	692300			12017	7542	6782	6782	15291	15291					0.0621089627454694
GTGASGSFK	9	Unmodified	_GTGASGSFK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2;ENSG00000168298|ENST00000304218|H1-4;ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187475|ENST00000338379|H1-6	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.20062255859375	2	406.200867	810.387182	-0.37701	-0.00015314	0.25358	0.000103	-0.12344	-5.014E-05	406.20080101750915	14.396	0.80575	14.292	14.105	14.91	-0.10466					57	27	3	0	0	0	0.19686	1	719	719		31.268	5.869	1	248730			12018	3169	6783	6783	15292	15292					-0.025596230961355104
GTGASGSFK	9	Unmodified	_GTGASGSFK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2;ENSG00000168298|ENST00000304218|H1-4;ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187475|ENST00000338379|H1-6	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.20062255859375	2	406.200867	810.387182	-0.37452	-0.00015213	0.24741	0.0001005	-0.12711	-5.1632E-05	406.2007891939019	14.34	1.3213	14.274	14.037	15.358	-0.066068					69	46	3	0	0	0	0.25346	1	684	684		10.8	4.5937	1	216810			12019	3169	6783	6783	15293	15293					-0.025596230961355104
GTGASGSFK	9	Unmodified	_GTGASGSFK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2;ENSG00000168298|ENST00000304218|H1-4;ENSG00000124575|ENST00000244534|H1-3;ENSG00000124610|ENST00000244573|H1-1;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187475|ENST00000338379|H1-6	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	406.200867	810.387182	-0.39162	-0.00015908	0.23735	9.6411E-05	-0.15427	-6.2666E-05	406.2007892432238	14.264	0.9254	14.264	14.055	14.981	0	-0.012365	-7.8953E-06	NaN	31.268	59	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250020			12020	3169	6783	6783							-0.025596230961355104
GTGIVGVFVK	10	Unmodified	_GTGIVGVFVK_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.77117919921875	2	488.794935	975.575317	0.55218	0.0002699	0.042552	2.0799E-05	0.59473	0.0002907	488.79492491949514	54.199	0.52271	54.199	53.974	54.496	0					47	18	3	0	0	0	0.16942	1	12818	12818		57.722	33.701	1	998780			12021	2125	6784	6784	15294	15294					0.0865523482827939
GTGIVGVFVK	10	Unmodified	_GTGIVGVFVK_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.77117919921875	2	488.794935	975.575317	0.46716	0.00022835	0.20309	9.9267E-05	0.67025	0.00032761	488.7949440937354	54.139	0.55547	54.203	54.01	54.566	0.063202					44	20	3	0	0	0	0.21475	1	12792	12792		45.7	27.565	1	921000			12022	2125	6784	6784	15295	15295					0.0865523482827939
GTGKTLIGK	9	Unmodified	_GTGKTLIGK_					0	0	0		nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.7349853515625	2	437.77146	873.528367	-0.24957	-0.00010925	0.13682	5.9897E-05	-0.11274	-4.9356E-05	437.7713926508495	15.333	0.4736	15.333	15.181	15.654	0					29	15	3	0	0	0	0.25527	1	1028	1028		8.7454	1.4562	1	116460			12023	3632	6785	6785	15296	15296					0.08654375277149029
GTGKTLIGK	9	Unmodified	_GTGKTLIGK_					0	0	0		nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.7713623046875	2	437.77146	873.528367	-0.16596	-7.2652E-05	0.16085	7.0415E-05	-0.0051089	-2.2365E-06	437.7713800779809	15.45	0.48899	15.34	15.151	15.64	-0.10981					32	16	3	0	0	0	0.15763	1	1032	1032		29.841	11.694	1	96574			12024	3632	6785	6785	15297	15297					0.08654375277149029
GTGKTLIGK	9	Unmodified	_GTGKTLIGK_					0	0	0		nc|ENSG00000132436|Q6PIW4-2|FIGNL1;ENSG00000132436|ENST00000433017|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.771240234375	2	437.77146	873.528367	-0.23288	-0.00010195	-0.0093512	-4.0937E-06	-0.24223	-0.00010604	437.77135825025664	15.45	0.42083	15.386	15.216	15.636	-0.064413					30	13	3	0	0	0	0.13296	1	1023	1023		33.445	15.299	1	116130			12025	3632	6785	6785	15298	15298					0.08654375277149029
GTGKTTFVK	9	Unmodified	_GTGKTTFVK_					0	0	0		RAN|p.H30Y|1|0.09|ENSG00000132341|chr12:130872887-130872887|C/T|missense_variant;ENST00000541630.5_1_12:131357386-131357560:+|nuORF;ENST00000464211.6_1_12:131357386-131359105:+|nuORF;ENST00000537745.5_1_12:131357386-131357560:+|nuORF;ENSG00000132341|ENST00000543796|RAN	RAN|p.H30Y|1|0.09|ENSG00000132341|chr12:130872887-130872887|C/T|missense_variant	RAN|p.H30Y|1|0.09|ENSG00000132341|chr12:130872887-130872887|C/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.76898193359375	2	469.768917	937.523281	-0.24047	-0.00011296	-0.01499	-7.0419E-06	-0.25546	-0.00012001	469.7688172956972	14.863	0.6992	14.863	14.649	15.348	0					57	24	4	0	0	0	0.0035713	2	831	831;876		97.741	14.312	1	1196800			12026	3622	6786	6786	15299;15300	15299					0.0520207141452147
GTGKTTFVK	9	Unmodified	_GTGKTTFVK_					0	0	0		RAN|p.H30Y|1|0.09|ENSG00000132341|chr12:130872887-130872887|C/T|missense_variant;ENST00000541630.5_1_12:131357386-131357560:+|nuORF;ENST00000464211.6_1_12:131357386-131359105:+|nuORF;ENST00000537745.5_1_12:131357386-131357560:+|nuORF;ENSG00000132341|ENST00000543796|RAN	RAN|p.H30Y|1|0.09|ENSG00000132341|chr12:130872887-130872887|C/T|missense_variant	RAN|p.H30Y|1|0.09|ENSG00000132341|chr12:130872887-130872887|C/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.76898193359375	2	469.768917	937.523281	-0.11518	-5.411E-05	-0.024958	-1.1725E-05	-0.14014	-6.5835E-05	469.76877192696264	14.942	0.66551	14.832	14.646	15.312	-0.10981					54	23	4	0	0	0	0.014058	2	859	859;908		73.196	23.663	1	1233800			12027	3622	6786	6786	15301;15302	15301					0.0520207141452147
GTGKTTFVK	9	Unmodified	_GTGKTTFVK_					0	0	0		RAN|p.H30Y|1|0.09|ENSG00000132341|chr12:130872887-130872887|C/T|missense_variant;ENST00000541630.5_1_12:131357386-131357560:+|nuORF;ENST00000464211.6_1_12:131357386-131359105:+|nuORF;ENST00000537745.5_1_12:131357386-131357560:+|nuORF;ENSG00000132341|ENST00000543796|RAN	RAN|p.H30Y|1|0.09|ENSG00000132341|chr12:130872887-130872887|C/T|missense_variant	RAN|p.H30Y|1|0.09|ENSG00000132341|chr12:130872887-130872887|C/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7688903808594	2	469.768917	937.523281	-0.087117	-4.0925E-05	-0.029807	-1.4002E-05	-0.11692	-5.4927E-05	469.7687840999144	14.976	0.72386	14.912	14.7	15.424	-0.064413					58	24	5	0	0	0	0.015535	2	868	868;914		70.929	13.68	1	1195500			12028	3622	6786	6786	15303;15304	15303					0.0520207141452147
GTGLFIYFR	9	Unmodified	_GTGLFIYFR_					0	0	0		ENST00000411500.5_1_6:32520814-32525810:-|nuORF	ENST00000411500.5_1_6:32520814-32525810:-|nuORF	ENST00000411500.5_1_6:32520814-32525810:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2930908203125	2	537.292559	1072.57057	0.47864	0.00025717	0.34569	0.00018574	0.82434	0.00044291	537.292748853815	67.979	2.931	67.979	66.964	69.895	0					241	105	5	0	0	0	0.0020732	1	17095	17095		114.65	66.9	1	2786800			12029	10270	6787	6787	15305	15305					0.037183506854944426
GTGMAEHVT	9	Unmodified	_GTGMAEHVT_					0	0	0			REV__nc|ENSG00000134571|Q14896-2|MYBPC3	REV__nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2528076171875	2	451.70546	901.396366	0.24515	0.00011073	-0.4408	-0.00019911	-0.19566	-8.8379E-05	451.70529717180347	24.017	0.65868	23.978	23.592	24.25	-0.038927					28	22	2	0	0	0	0.25202	1	3556	3556		10.824	0.75	1	48158	+		12030	15685	6788	6788	15306	15306					-0.05827597802112905
GTGNLGFPK	9	Unmodified	_GTGNLGFPK_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.63592529296875	2	445.74016	889.465767	-1.4082	-0.0006277	-0.75029	-0.00033443	-2.1585	-0.00096213	445.7400643308346	34.777	0.87716	34.852	34.576	35.454	0.075306					80	31	4	0	0	0	0.11234	1	6915	6915		29.841	12.898	1	1296400			12031	6700	6789	6789	15307	15307					0.016612292089462244
GTGNLGFPK	9	Unmodified	_GTGNLGFPK_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.6358947753906	2	445.74016	889.465767	-0.56772	-0.00025305	-1.2657	-0.00056419	-1.8335	-0.00081725	445.7397662546434	34.731	0.88439	34.808	34.533	35.418	0.077377					84	31	4	0	0	0	0.15943	1	6903	6903		32.786	15.843	1	1147900			12032	6700	6789	6789	15308	15308					0.016612292089462244
GTGTIIVAK	9	Unmodified	_GTGTIIVAK_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.S1928Lfs*17|1|0.08|ENSG00000083857|chr4:186620804-186620804|A/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8880310058594	2	430.26601	858.517468	-0.28448	-0.0001224	-0.096732	-4.162E-05	-0.38122	-0.00016402	430.2659268653569	27.484	0.57642	27.484	27.237	27.814	0					41	19	3	0	0	0	0.24289	1	4709	4709		18.146	4.2403	1	280150			12033	1234	6790	6790	15309	15309					0.08254972902841473
GTGTIIVAK	9	Unmodified	_GTGTIIVAK_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.S1928Lfs*17|1|0.08|ENSG00000083857|chr4:186620804-186620804|A/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8879089355469	2	430.26601	858.517468	-0.30675	-0.00013198	0.33675	0.00014489	0.03	1.2908E-05	430.2660357337728	27.511	0.70705	27.49	27.242	27.949	-0.021412					44	24	3	0	0	0	0.24848	1	4719	4719		13.906	5.9959	1	255390			12034	1234	6790	6790	15310	15310					0.08254972902841473
GTGTLVKVK	9	Unmodified	_GTGTLVKVK_					0	0	0			REV__ENST00000473735.1_1_10:135216152-135233666:+|nuORF	REV__ENST00000473735.1_1_10:135216152-135233666:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2526550292969	2	451.78711	901.559667	0.10268	4.639E-05	-0.2765	-0.00012492	-0.17381	-7.8527E-05	451.78690605129077	23.848	0.55489	23.775	23.563	24.118	-0.072557					40	18	3	0	0	0	0.23784	1	3549	3549		13.906	0.86358	1	92636	+		12035	16436	6791	6791	15311	15311					0.10494948311225016
GTHLMGLFVK	10	Oxidation (M)	_GTHLM(Oxidation (M))GLFVK_		GTHLM(1)GLFVK		GTHLM(76)GLFVK	0	0	1		ENST00000325509.4_1_8:72754818-72754914:-|nuORF	ENST00000325509.4_1_8:72754818-72754914:-|nuORF	ENST00000325509.4_1_8:72754818-72754914:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8048706054688	2	559.804977	1117.5954	-0.061078	-3.4192E-05	-0.22787	-0.00012756	-0.28894	-0.00016175	559.8049293348091	39.379	0.95548	39.379	38.903	39.858	0					71	34	3	0	0	0	0.0163	3	8286	8238;8286;8329		75.761	66.457	1	693800			12036	9408	6792	6792	15312;15313;15314	15313		926			0.04130662496572768
GTHLMGLFVK	10	Oxidation (M)	_GTHLM(Oxidation (M))GLFVK_		GTHLM(1)GLFVK		GTHLM(76)GLFVK	0	0	1		ENST00000325509.4_1_8:72754818-72754914:-|nuORF	ENST00000325509.4_1_8:72754818-72754914:-|nuORF	ENST00000325509.4_1_8:72754818-72754914:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.8047485351562	2	559.804977	1117.5954	0.17832	9.9826E-05	-0.26196	-0.00014665	-0.083637	-4.682E-05	559.8048366030965	39.236	0.86111	39.328	38.916	39.777	0.09267					73	30	3	0	0	0	0.0163	2	8212	8212;8258		75.761	57.614	1	817650			12037	9408	6792	6792	15315;15316	15315		926			0.04130662496572768
GTHLMGLFVK	10	Oxidation (M)	_GTHLM(Oxidation (M))GLFVK_		GTHLM(1)GLFVK		GTHLM(80)GLFVK	0	0	1		ENST00000325509.4_1_8:72754818-72754914:-|nuORF	ENST00000325509.4_1_8:72754818-72754914:-|nuORF	ENST00000325509.4_1_8:72754818-72754914:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.8050537109375	2	559.804977	1117.5954	0.33897	0.00018976	-0.59606	-0.00033368	-0.2571	-0.00014392	559.8047130961966	39.165	0.83449	39.265	38.953	39.788	0.099403					64	29	3	0	0	0	0.012782	2	8255	8205;8255		79.596	62.483	1	835350			12038	9408	6792	6792	15317;15318	15318		926			0.04130662496572768
GTHMGPFVER	10	Oxidation (M)	_GTHM(Oxidation (M))GPFVER_		GTHM(1)GPFVER		GTHM(41)GPFVER	0	0	1		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.771240234375	2	573.771665	1145.52878	0.55249	0.000317	-1.2258	-0.00070331	-0.67328	-0.00038631	573.7711924439392	21.294	0.86998	21.184	20.836	21.706	-0.11003					60	30	3	0	0	0	0.13386	1	2805	2805		40.725	30.651	1	271900			12039	530	6793	6793	15319	15319		58			-0.03816573065319062
GTHMGPFVER	10	Oxidation (M)	_GTHM(Oxidation (M))GPFVER_		GTHM(1)GPFVER		GTHM(43)GPFVER	0	0	1		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.7715454101562	2	573.771665	1145.52878	0.33622	0.00019291	-1.0264	-0.00058891	-0.69017	-0.000396	573.7712962118723	21.18	0.76196	21.127	20.809	21.571	-0.05291					64	26	3	0	0	0	0.12389	1	2809	2809		42.835	32.685	1	249850			12040	530	6793	6793	15320	15320		58			-0.03816573065319062
GTHTKMHKK	9	Unmodified	_GTHTKMHKK_					0	0	0			REV__nc|ENSG00000147180|Q9Y462|ZNF711	REV__nc|ENSG00000147180|Q9Y462|ZNF711	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.3197021484375	2	534.292568	1066.57058	0.22683	0.00012119	0.089223	4.7671E-05	0.31605	0.00016886	534.2927838628743	26.511	0.65347	26.473	26.01	26.664	-0.038671					40	22	2	0	0	0	0.24848	1	4397	4397		13.906	3.0821	1	205240	+		12041	16377	6794	6794	15321	15321					0.03996027413859338
GTHVVQHKYF	10	Unmodified	_GTHVVQHKYF_					0	0	0			REV__ENSG00000204920|ENST00000270014|ZNF155	REV__ENSG00000204920|ENST00000270014|ZNF155	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.547607421875	3	405.88049	1214.61964	-0.20926	-8.4936E-05	0.24407	9.9063E-05	0.034807	1.4127E-05	405.8804933160179	33.705	0.68424	33.772	33.469	34.153	0.0667					42	24	2	0	0	0	0.3156	1	6521	6521		3.5871	0.26742	1	413040	+		12042	18970	6795	6795	15322	15322					0.02091638974457055
GTIAGLNVLR	10	Unmodified	_GTIAGLNVLR_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000508840.1_1_8:30095113-30095479:+|nuORF;ENST00000532167.5_1_11:122930757-122931830:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.3087158203125	2	507.308741	1012.60293	0.34043	0.0001727	-0.1265	-6.4175E-05	0.21393	0.00010853	507.30852705425485	51.704	0.8049	51.704	51.406	52.211	0					63	29	4	0	0	0	2.0929E-05	2	12091	12091;12140		143.91	71.987	1	2959800			12043	2285	6796	6796	15323;15324	15323					0.09713138088511641
GTIAGLNVLR	10	Unmodified	_GTIAGLNVLR_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000508840.1_1_8:30095113-30095479:+|nuORF;ENST00000532167.5_1_11:122930757-122931830:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.30889892578125	2	507.308741	1012.60293	0.30105	0.00015273	-0.038931	-1.975E-05	0.26212	0.00013298	507.308546893754	51.638	0.8516	51.685	51.454	52.305	0.046574					61	30	4	0	0	0	2.0929E-05	2	12074	12074;12125		143.91	68.148	1	3264700			12044	2285	6796	6796	15325;15326	15325					0.09713138088511641
GTIAGLNVLR	10	Unmodified	_GTIAGLNVLR_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENST00000508840.1_1_8:30095113-30095479:+|nuORF;ENST00000532167.5_1_11:122930757-122931830:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.3086853027344	2	507.308741	1012.60293	0.17932	9.0971E-05	-0.088653	-4.4974E-05	0.090667	4.5996E-05	507.3085864612199	51.789	0.80415	51.795	51.476	52.28	0.0058365					54	29	3	0	0	0	0.00013576	2	12106	12106;12163		132.38	59.412	1	3516600			12045	2285	6796	6796	15327;15328	15327					0.09713138088511641
GTIAGLNVMR	10	Oxidation (M)	_GTIAGLNVM(Oxidation (M))R_		GTIAGLNVM(1)R		GTIAGLNVM(97)R	0	0	1		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.805419921875	2	524.284408	1046.55426	0.31128	0.0001632	0.20567	0.00010783	0.51696	0.00027103	524.2846351980209	38.421	0.50508	38.421	38.206	38.711	0					38	17	3	0	0	0	0.015812	1	7993	7993		96.936	53.077	1	617580			12046	623	6797	6797	15329	15329		74			0.03284901457095657
GTIAGLNVMR	10	Oxidation (M)	_GTIAGLNVM(Oxidation (M))R_		GTIAGLNVM(1)R		GTIAGLNVM(53)R	0	0	1		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8053588867188	2	524.284408	1046.55426	0.51826	0.00027172	0.32434	0.00017005	0.8426	0.00044176	524.2846789640594	38.349	0.43789	38.44	38.264	38.702	0.090885					39	15	4	0	0	0	0.19117	1	7949	7949		53.404	28.413	1	717650			12047	623	6797	6797	15330	15330		74			0.03284901457095657
GTIAGLNVMR	10	Oxidation (M)	_GTIAGLNVM(Oxidation (M))R_		GTIAGLNVM(1)R		GTIAGLNVM(64)R	0	0	1		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.3135986328125	2	524.284408	1046.55426	0.50349	0.00026397	0.39662	0.00020794	0.90011	0.00047191	524.2844613479956	38.323	0.50184	38.42	38.176	38.678	0.097527					38	17	3	0	0	0	0.14181	1	8001	8001		63.961	35.474	1	611430			12048	623	6797	6797	15331	15331		74			0.03284901457095657
GTIANILAH	9	Unmodified	_GTIANILAH_					0	0	0		ENST00000269228.9_1_18:21153420-21153513:-|nuORF	ENST00000269228.9_1_18:21153420-21153513:-|nuORF	ENST00000269228.9_1_18:21153420-21153513:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2611999511719	2	455.261259	908.507966	0.38985	0.00017748	-0.11933	-5.4328E-05	0.27051	0.00012315	455.26108448974657	47.526	0.5276	47.526	47.244	47.771	0					33	18	2	0	0	0	0.0022761	1	10832	10832		108	47.607	1	1089500			12049	9075	6798	6798	15332	15332					0.05005204617327763
GTIANILAH	9	Unmodified	_GTIANILAH_					0	0	0		ENST00000269228.9_1_18:21153420-21153513:-|nuORF	ENST00000269228.9_1_18:21153420-21153513:-|nuORF	ENST00000269228.9_1_18:21153420-21153513:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	455.261259	908.507966	0.31661	0.00014414	-0.1289	-5.8683E-05	0.18771	8.5455E-05	455.2610684861516	47.48	0.62774	47.527	47.266	47.893	0.047523	0.012482	5.021E-05	NaN	108	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1223500			12050	9075	6798	6798							0.05005204617327763
GTIANILAH	9	Unmodified	_GTIANILAH_					0	0	0		ENST00000269228.9_1_18:21153420-21153513:-|nuORF	ENST00000269228.9_1_18:21153420-21153513:-|nuORF	ENST00000269228.9_1_18:21153420-21153513:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	455.261259	908.507966	0.5934	0.00027015	-0.29769	-0.00013553	0.2957	0.00013462	455.2610299421743	47.448	0.52465	47.491	47.273	47.797	0.04332	-0.023907	-0.00010348	NaN	108	36	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1135500			12051	9075	6798	6798							0.05005204617327763
GTIEKSKLITK	11	Unmodified	_GTIEKSKLITK_					0	0	0		NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.L1448*|1|0.12|ENSG00000144426|chr2:203136636-203136636|T/-|frameshift_variant	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.58709716796875	3	406.586972	1216.73909	-0.075677	-3.0769E-05	0.25537	0.00010383	0.1797	7.3062E-05	406.5870777849227	19.619	0.94888	19.503	19.205	20.154	-0.11592					112	32	5	0	0	0	8.8574E-06	3	2299	2256;2299;2348		125.38	51.3	1	1487000			12052	4584	6799	6799	15333;15334;15335	15334					0.1393878780850173
GTIEKSKLITK	11	Unmodified	_GTIEKSKLITK_					0	0	0		NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.L1448*|1|0.12|ENSG00000144426|chr2:203136636-203136636|T/-|frameshift_variant	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.5870666503906	3	406.586972	1216.73909	-0.0073895	-3.0045E-06	0.21529	8.7536E-05	0.2079	8.4531E-05	406.5870661139591	19.575	0.88945	19.52	19.2	20.09	-0.055693					112	31	5	0	0	0	0.00070867	3	2279	2230;2279;2327		100.94	53.439	1	1418100			12053	4584	6799	6799	15336;15337;15338	15337					0.1393878780850173
GTIEKSKLITK	11	Unmodified	_GTIEKSKLITK_					0	0	0		NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.L1448*|1|0.12|ENSG00000144426|chr2:203136636-203136636|T/-|frameshift_variant	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	406.586972	1216.73909	-0.24543	-9.9787E-05	0.37436	0.00015221	0.12894	5.2424E-05	406.58712581274716	19.458	0.91986	19.458	19.125	20.045	0	-0.035578	0.00010594	NaN	125.38	109	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1301900			12054	4584	6799	6799							0.1393878780850173
GTIEKVFVK	9	Unmodified	_GTIEKVFVK_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000464601.5_1_3:182733228-182740387:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8081359863281	2	510.808042	1019.60153	0.60133	0.00030716	-0.35721	-0.00018247	0.24411	0.0001247	510.8077898333857	32.421	0.55025	32.421	32.199	32.749	0					52	19	3	0	0	0	0.01909	1	6173	6173		65.474	19.774	1	559360			12055	1103	6800	6800	15339	15339					0.09251503999769284
GTIEKVFVK	9	Unmodified	_GTIEKVFVK_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000464601.5_1_3:182733228-182740387:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.80810546875	2	510.808042	1019.60153	0.58243	0.00029751	-0.28531	-0.00014574	0.29712	0.00015177	510.80782076148614	32.366	0.54896	32.422	32.126	32.675	0.055309					50	19	3	0	0	0	0.0035713	2	6146	6146;6197		97.741	48.187	1	634520			12056	1103	6800	6800	15340;15341	15340					0.09251503999769284
GTIEKVFVK	9	Unmodified	_GTIEKVFVK_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000464601.5_1_3:182733228-182740387:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.8081970214844	2	510.808042	1019.60153	0.27871	0.00014237	-0.096389	-4.9237E-05	0.18232	9.3129E-05	510.8079876114023	32.373	0.60314	32.428	32.136	32.739	0.054371					54	21	3	0	0	0	0.016571	1	6151	6151		69.338	31.163	1	643880			12057	1103	6800	6800	15342	15342					0.09251503999769284
GTIFGIYRK	9	Unmodified	_GTIFGIYRK_					0	0	0		ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.8057861328125	2	527.805834	1053.59712	0.5544	0.00029261	-1.0102	-0.00053317	-0.45576	-0.00024055	527.805655571709	40.218	1.0088	40.218	39.595	40.604	0					60	36	3	0	0	0	0.018449	2	8552	8552;8604		66.457	28.281	1	868220			12058	5930	6801	6801	15343;15344	15343					0.07246039576853036
GTIFGIYRK	9	Unmodified	_GTIFGIYRK_					0	0	0		ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.805908203125	2	527.805834	1053.59712	0.62971	0.00033237	-1.0817	-0.00057092	-0.45198	-0.00023856	527.805655940676	39.998	1.0371	40.091	39.548	40.585	0.09267					55	36	3	0	0	0	0.018449	1	8493	8493		66.457	20.757	1	779160			12059	5930	6801	6801	15345	15345					0.07246039576853036
GTIFGIYRK	9	Unmodified	_GTIFGIYRK_					0	0	0		ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.805908203125	2	527.805834	1053.59712	0.55932	0.00029521	-0.87641	-0.00046258	-0.31709	-0.00016736	527.8056835091181	39.94	0.94057	40.039	39.539	40.479	0.099403					49	33	3	0	0	0	0.069366	1	8456	8456		45.7	5.7499	1	957510			12060	5930	6801	6801	15346	15346					0.07246039576853036
GTIGHVAHGK	10	Unmodified	_GTIGHVAHGK_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.769775390625	2	488.769783	975.525013	-0.048347	-2.3631E-05	0.12823	6.2674E-05	0.07988	3.9043E-05	488.7698569791178	12.797	0.67037	12.797	12.612	13.282	0					42	23	3	0	0	0	0.010092	1	225	225		82.529	51.893	1	360780			12061	3507	6802	6802	15347	15347					0.03627125223135863
GTIGHVAHGK	10	Unmodified	_GTIGHVAHGK_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7697448730469	2	488.769783	975.525013	-0.009506	-4.6462E-06	0.13837	6.7631E-05	0.12886	6.2985E-05	488.7698599020279	12.809	0.40373	12.71	12.521	12.924	-0.099291					35	13	4	0	0	0	0.010092	1	243	243		82.529	53.448	1	344850			12062	3507	6802	6802	15348	15348					0.03627125223135863
GTIGHVAHGK	10	Unmodified	_GTIGHVAHGK_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.76971435546875	2	488.769783	975.525013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.827	1	12.759	12.259	13.259	-0.067496								0	0	0	1.8901E-05	1	242	242		99.755	67.45	1				12063	3507	6802	6802	15349	15349					0.03627125223135863
GTIGKKFAR	9	Unmodified	_GTIGKKFAR_					0	0	0		ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.297607421875	2	489.298176	976.581799	0.013693	6.6998E-06	-0.19721	-9.6493E-05	-0.18351	-8.9793E-05	489.29789467821564	15.026	0.35877	15.026	14.873	15.232	0					22	12	2	0	0	0	0.26612	1	912	912		13.906	9.15	1	123700			12064	3896	6803	6803	15350	15350					0.0925717277965532
GTIGKKFAR	9	Unmodified	_GTIGKKFAR_					0	0	0		ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2980041503906	2	489.298176	976.581799	0.094718	4.6345E-05	-0.14664	-7.1752E-05	-0.051924	-2.5407E-05	489.2979623346211	15.129	0.35641	15.019	14.847	15.204	-0.10981					29	12	3	0	0	0	0.21447	1	934	934		21.537	10.713	1	137020			12065	3896	6803	6803	15351	15351					0.0925717277965532
GTIGKKFAR	9	Unmodified	_GTIGKKFAR_					0	0	0		ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.7723083496094	2	489.298176	976.581799	0.024199	1.184E-05	-0.040958	-2.0041E-05	-0.016759	-8.2002E-06	489.2980051181275	15.143	0.26344	15.078	14.984	15.247	-0.064414					18	8	3	0	0	0	0.24848	1	939	939		13.906	7.1829	1	146730			12066	3896	6803	6803	15352	15352					0.0925717277965532
GTIGLALAR	9	Unmodified	_GTIGLALAR_					0	0	0		ENST00000487668.5_1_22:20100432-20101310:-|nuORF;ENST00000494820.5_1_22:20100432-20103278:-|nuORF;nc|ENSG00000099899|Q8IZ69-2|TRMT2A;ENSG00000099899|ENST00000252136|TRMT2A	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2715759277344	2	436.271627	870.528701	-0.099499	-4.3408E-05	0.17961	7.8359E-05	0.080111	3.495E-05	436.2716020883265	43.928	0.5246	43.928	43.681	44.206	0					46	18	3	0	0	0	0.0028626	1	9704	9704		103.35	24.625	1	787000			12067	1501	6804	6804	15353	15353					0.0882579499698295
GTIGLALAR	9	Unmodified	_GTIGLALAR_					0	0	0		ENST00000487668.5_1_22:20100432-20101310:-|nuORF;ENST00000494820.5_1_22:20100432-20103278:-|nuORF;nc|ENSG00000099899|Q8IZ69-2|TRMT2A;ENSG00000099899|ENST00000252136|TRMT2A	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.271484375	2	436.271627	870.528701	0.021816	9.5175E-06	-0.00087934	-3.8363E-07	0.020936	9.1339E-06	436.27153893872344	43.848	0.47523	43.925	43.626	44.102	0.077515					43	17	3	0	0	0	0.0016361	1	9665	9665		114.65	22.158	1	564260			12068	1501	6804	6804	15354	15354					0.0882579499698295
GTIGLALAR	9	Unmodified	_GTIGLALAR_					0	0	0		ENST00000487668.5_1_22:20100432-20101310:-|nuORF;ENST00000494820.5_1_22:20100432-20103278:-|nuORF;nc|ENSG00000099899|Q8IZ69-2|TRMT2A;ENSG00000099899|ENST00000252136|TRMT2A	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	ENST00000487668.5_1_22:20100432-20101310:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.2716064453125	2	436.271627	870.528701	0.021909	9.5584E-06	-0.060628	-2.645E-05	-0.038719	-1.6892E-05	436.27150631017383	43.804	0.52728	43.888	43.604	44.131	0.083992					39	19	3	0	0	0	0.0016361	1	9647	9647		114.65	22.158	1	686560			12069	1501	6804	6804	15355	15355					0.0882579499698295
GTIGLTIAK	9	Unmodified	_GTIGLTIAK_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.27374267578125	2	437.273835	872.533118	0.15207	6.6497E-05	-0.26003	-0.0001137	-0.10796	-4.7206E-05	437.2736482421326	40.628	0.62622	40.628	40.36	40.986	0					46	22	3	0	0	0	0.00019464	1	8667	8667		133.05	47.411	1	430650			12070	2470	6805	6805	15356	15356					0.0917525941989652
GTIGLTIAK	9	Unmodified	_GTIGLTIAK_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.273681640625	2	437.273835	872.533118	0.20774	9.0841E-05	-0.4002	-0.000175	-0.19245	-8.4154E-05	437.2735356982762	40.489	0.58688	40.582	40.394	40.98	0.09267					41	21	3	0	0	0	0.0010968	1	8644	8644		121.53	45.773	1	443030			12071	2470	6805	6805	15357	15357					0.0917525941989652
GTIGLTIAK	9	Unmodified	_GTIGLTIAK_					0	0	0		ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.273681640625	2	437.273835	872.533118	0.11018	4.8178E-05	-0.33834	-0.00014795	-0.22816	-9.977E-05	437.27360239645344	40.486	0.62243	40.586	40.34	40.962	0.099407					41	22	3	0	0	0	0.0010968	1	8629	8629		121.53	42.806	1	502210			12072	2470	6805	6805	15358	15358					0.0917525941989652
GTIKDIVTR	9	Unmodified	_GTIKDIVTR_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;ENST00000490438.1_1_9:95050027-95055918:-|nuORF	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.8009948730469	2	501.800749	1001.58694	0.54258	0.00027227	1.6466	0.00082624	2.1891	0.0010985	501.80187064560533	29.169	0.68114	29.169	28.924	29.605	0					59	24	3	0	0	0	0.0083763	1	5178	5178		81.915	22.547	1	643910			12073	7846	6806	6806	15359	15359					0.08621431851611305
GTIMDRSIILR	11	Oxidation (M)	_GTIM(Oxidation (M))DRSIILR_		GTIM(1)DRSIILR		GTIM(91)DRSIILR	0	0	1		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.5666809082031	3	430.911462	1289.71256	0.10453	4.5043E-05	-0.47342	-0.000204	-0.36889	-0.00015896	430.91136919336896	37.889	0.83486	37.889	37.314	38.149	0					64	29	4	0	0	0	0.0014045	1	7842	7842		91.233	63.051	1	2051400			12074	3528	6807	6807	15360	15360		446			0.07928775645541464
GTIMDRSIILR	11	Oxidation (M)	_GTIM(Oxidation (M))DRSIILR_		GTIM(1)DRSIILR		GTIM(83)DRSIILR	0	0	1		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.911376953125	3	430.911462	1289.71256	0.01702	7.3342E-06	-0.54095	-0.0002331	-0.52393	-0.00022577	430.9113788561869	37.782	0.5156	37.873	37.693	38.209	0.090881					60	18	5	0	0	0	0.0034866	2	7823	7804;7823		83.455	60.439	1	1980600			12075	3528	6807	6807	15361;15362	15362		446			0.07928775645541464
GTIMDRSIILR	11	Oxidation (M)	_GTIM(Oxidation (M))DRSIILR_		GTIM(1)DRSIILR		GTIM(46)DRSIILR	0	0	1		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.5667419433594	3	430.911462	1289.71256	-0.01292	-5.5673E-06	-0.075127	-3.2373E-05	-0.088047	-3.794E-05	430.9114489447319	37.399	0.37603	37.492	37.248	37.624	0.093018					34	13	3	0	0	0	0.073872	1	7707	7707		46.34	32.805	1	2041400			12076	3528	6807	6807	15363	15363		446			0.07928775645541464
GTIMDRSIILR	11	Oxidation (M)	_GTIM(Oxidation (M))DRSIILR_		GTIM(1)DRSIILR		GTIM(76)DRSIILR	0	0	1		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.9112854003906	3	430.911462	1289.71256	-0.0798	-3.4387E-05	-0.35224	-0.00015178	-0.43204	-0.00018617	430.9113992616524	37.71	0.5185	37.808	37.604	38.122	0.097527					53	18	4	0	0	0	0.0070159	2	7796	7796;7810		75.986	52.971	1	2137200			12077	3528	6807	6807	15364;15365	15364		446			0.07928775645541464
GTINIVHPKL	10	Unmodified	_GTINIVHPKL_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1;PSAT1|p.G218Lfs*87|1|0.05|ENSG00000135069|chr9:78308494-78308495|-/CTTAAGAA|frameshift_variant	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.332275390625	2	546.332216	1090.64988	0.25388	0.0001387	0.20203	0.00011037	0.4559	0.00024908	546.332207531689	42.184	1.0844	42.184	41.786	42.871	0					103	40	3	0	0	0	2.7564E-05	3	9142	9097;9142;9193		139.78	65.585	1	5100500			12078	3842	6808	6808	15366;15367;15368	15367					0.10817997639651367
GTINIVHPKL	10	Unmodified	_GTINIVHPKL_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1;PSAT1|p.G218Lfs*87|1|0.05|ENSG00000135069|chr9:78308494-78308495|-/CTTAAGAA|frameshift_variant	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.332275390625	2	546.332216	1090.64988	0.66488	0.00036324	-0.25036	-0.00013678	0.41452	0.00022647	546.3319468977395	41.935	0.98207	42.026	41.754	42.736	0.090252					107	36	4	0	0	0	1.4539E-08	2	9073	9073;9122		162.31	72.179	1	5337600			12079	3842	6808	6808	15369;15370	15369					0.10817997639651367
GTINIVHPKL	10	Unmodified	_GTINIVHPKL_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1;PSAT1|p.G218Lfs*87|1|0.05|ENSG00000135069|chr9:78308494-78308495|-/CTTAAGAA|frameshift_variant	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.3323364257812	2	546.332216	1090.64988	0.76838	0.00041979	-0.33272	-0.00018178	0.43565	0.00023801	546.3319161670627	41.872	0.99588	41.969	41.7	42.696	0.096626					96	36	4	0	0	0	1.4539E-08	2	9056	9056;9107		162.31	81.638	1	5146700			12080	3842	6808	6808	15371;15372	15371					0.10817997639651367
GTIPQIFGK	9	Unmodified	_GTIPQIFGK_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF;ENST00000542790.1_1_12:122734385-122735751:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2896728515625	2	480.779285	959.544017	0.3578	0.00017202	-0.024444	-1.1752E-05	0.33336	0.00016027	480.7792306170118	51.317	0.52966	51.317	50.978	51.508	0					40	19	3	0	0	0	0.14786	1	11936	11936		31.268	7.2478	1	784730			12081	4261	6809	6809	15373	15373					0.0626266179419872
GTIPQIFGK	9	Unmodified	_GTIPQIFGK_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF;ENST00000542790.1_1_12:122734385-122735751:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.28985595703125	2	480.779285	959.544017	0.29534	0.00014199	-0.19607	-9.4265E-05	0.099274	4.7729E-05	480.7792795708881	51.283	0.80097	51.33	50.794	51.595	0.046577					55	29	3	0	0	0	0.13748	1	11928	11928		32.786	12.332	1	782660			12082	4261	6809	6809	15374	15374					0.0626266179419872
GTIPQIFGK	9	Unmodified	_GTIPQIFGK_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF;ENST00000542790.1_1_12:122734385-122735751:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2897644042969	2	480.779285	959.544017	0.36838	0.00017711	-0.21474	-0.00010324	0.15364	7.3866E-05	480.7792010500342	51.336	0.62427	51.345	51.042	51.666	0.0095673					42	23	3	0	0	0	0.18208	1	11926	11926		26.268	3.5319	1	639180			12083	4261	6809	6809	15375	15375					0.0626266179419872
GTIQLLEIMK	10	Oxidation (M)	_GTIQLLEIM(Oxidation (M))K_		GTIQLLEIM(1)K		GTIQLLEIM(79)K	0	0	1		nc|ENSG00000117308|Q14376-2|GALE;ENSG00000117308|ENST00000617979|GALE;ENST00000459934.5_1_1:24122658-24127224:-|nuORF	nc|ENSG00000117308|Q14376-2|GALE	nc|ENSG00000117308|Q14376-2|GALE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.8115844726562	2	581.331024	1160.6475	0.32693	0.00019005	0.047747	2.7757E-05	0.37467	0.00021781	581.3310193354895	55.231	0.59512	55.231	54.943	55.539	0					32	21	2	0	0	0	0.098493	1	13180	13180		78.61	21.361	1	699440			12084	2788	6810	6810	15376	15376		353			0.0735978111968052
GTIQLLEIMK	10	Oxidation (M)	_GTIQLLEIM(Oxidation (M))K_		GTIQLLEIM(1)K		GTIQLLEIM(110)K	0	0	1		nc|ENSG00000117308|Q14376-2|GALE;ENSG00000117308|ENST00000617979|GALE;ENST00000459934.5_1_1:24122658-24127224:-|nuORF	nc|ENSG00000117308|Q14376-2|GALE	nc|ENSG00000117308|Q14376-2|GALE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.8109741210938	2	581.331024	1160.6475	0.38388	0.00022316	-0.010516	-6.1134E-06	0.37336	0.00021705	581.3309448583285	55.336	0.37924	55.317	55.129	55.508	-0.019081					22	13	2	0	0	0	0.013089	1	13194	13194		105.35	31.146	1	649790			12085	2788	6810	6810	15377	15377		353			0.0735978111968052
GTIQLLEIMK	10	Oxidation (M)	_GTIQLLEIM(Oxidation (M))K_					0	0	1		nc|ENSG00000117308|Q14376-2|GALE;ENSG00000117308|ENST00000617979|GALE;ENST00000459934.5_1_1:24122658-24127224:-|nuORF	nc|ENSG00000117308|Q14376-2|GALE	nc|ENSG00000117308|Q14376-2|GALE	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	581.331024	1160.6475	0.52473	0.00030504	-0.11476	-6.6714E-05	0.40997	0.00023833	581.3307972761039	55.225	0.44536	55.295	55.055	55.501	0.070885	0.014267	-0.00013603	NaN	105.35	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	530950			12086	2788	6810	6810				353			0.0735978111968052
GTIRSRSFIFK	11	Unmodified	_GTIRSRSFIFK_					0	0	0		ENST00000514301.1_1_4:100787149-100789339:+|nuORF;ENSG00000070190|ENST00000512369|DAPP1	ENST00000514301.1_1_4:100787149-100789339:+|nuORF	ENST00000514301.1_1_4:100787149-100789339:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.9224853515625	3	437.922578	1310.7459	-0.08017	-3.5108E-05	-0.51801	-0.00022685	-0.59818	-0.00026196	437.9224620321298	33.17	1.6068	33.17	32.811	34.418	0					178	57	5	0	0	0	1.9719E-05	2	6386	6386;6436		115.15	75.939	1	6747700			12087	919	6811	6811	15378;15379	15378					0.10296145479742336
GTIRSRSFIFK	11	Unmodified	_GTIRSRSFIFK_					0	0	0		ENST00000514301.1_1_4:100787149-100789339:+|nuORF;ENSG00000070190|ENST00000512369|DAPP1	ENST00000514301.1_1_4:100787149-100789339:+|nuORF	ENST00000514301.1_1_4:100787149-100789339:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.92254638671875	3	437.922578	1310.7459	-0.00079831	-3.496E-07	-0.63683	-0.00027888	-0.63763	-0.00027923	437.92241148185303	33.028	1.3505	33.084	32.73	34.081	0.055313					147	48	5	0	0	0	1.2859E-05	3	6353	6307;6353;6402		121.61	75.587	1	6854100			12088	919	6811	6811	15380;15381;15382	15381					0.10296145479742336
GTIRSRSFIFK	11	Unmodified	_GTIRSRSFIFK_					0	0	0		ENST00000514301.1_1_4:100787149-100789339:+|nuORF;ENSG00000070190|ENST00000512369|DAPP1	ENST00000514301.1_1_4:100787149-100789339:+|nuORF	ENST00000514301.1_1_4:100787149-100789339:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.9223937988281	3	437.922578	1310.7459	-0.036483	-1.5977E-05	-0.573	-0.00025093	-0.60948	-0.0002669	437.9224541405882	33.065	1.5497	33.119	32.818	34.367	0.054371					156	55	6	0	0	0	0.0042104	2	6332	6332;6381		81.923	43.043	1	7705700			12089	919	6811	6811	15383;15384	15383					0.10296145479742336
GTISFFSSLK	10	Unmodified	_GTISFFSSLK_					0	0	0		ENSG00000100926|ENST00000261789|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.79541015625	2	543.795132	1085.57571	0.32051	0.00017429	-1.5245	-0.00082902	-1.204	-0.00065473	543.795328055625	61.547	1.0617	61.547	61.022	62.084	0					63	39	2	0	0	0	0.012632	1	15179	15179		104.48	67.978	1	850800			12090	1646	6812	6812	15385	15385					0.03634609757477847
GTISGGFFK	9	Unmodified	_GTISGGFFK_					0	0	0		chr12:68333664-68442064|453|15.57|0.5|4.97|-|0|LINC02384,LINC02384|1	chr12:68333664-68442064|453|15.57|0.5|4.97|-|0|LINC02384,LINC02384|1	chr12:68333664-68442064|453|15.57|0.5|4.97|-|0|LINC02384,LINC02384|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2425231933594	2	457.242535	912.470518	0.039155	1.7903E-05	0.38751	0.00017719	0.42667	0.00019509	457.2425744492594	43.962	1.0735	43.962	43.388	44.462	0					81	39	4	0	0	0	9.2305E-05	3	9715	9668;9715;9772		142.08	77.843	1	2577400			12091	134	6813	6813	15386;15387;15388	15387					0.010781133517184571
GTISGGFFK	9	Unmodified	_GTISGGFFK_					0	0	0		chr12:68333664-68442064|453|15.57|0.5|4.97|-|0|LINC02384,LINC02384|1	chr12:68333664-68442064|453|15.57|0.5|4.97|-|0|LINC02384,LINC02384|1	chr12:68333664-68442064|453|15.57|0.5|4.97|-|0|LINC02384,LINC02384|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2425231933594	2	457.242535	912.470518	0.18428	8.426E-05	0.14439	6.6021E-05	0.32867	0.00015028	457.24245045756686	43.624	0.72703	43.702	43.401	44.128	0.077515					74	26	4	0	0	0	0.00070271	3	9622	9572;9622;9676		126.57	69.095	1	2953500			12092	134	6813	6813	15389;15390;15391	15390					0.010781133517184571
GTISGGFFK	9	Unmodified	_GTISGGFFK_					0	0	0		chr12:68333664-68442064|453|15.57|0.5|4.97|-|0|LINC02384,LINC02384|1	chr12:68333664-68442064|453|15.57|0.5|4.97|-|0|LINC02384,LINC02384|1	chr12:68333664-68442064|453|15.57|0.5|4.97|-|0|LINC02384,LINC02384|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.24249267578125	2	457.242535	912.470518	0.22781	0.00010416	-0.079199	-3.6213E-05	0.14861	6.795E-05	457.24244486458883	43.648	1.0435	43.732	43.384	44.427	0.083992					92	38	5	0	0	0	1.2283E-05	3	9604	9556;9604;9651		155.03	97.555	1	2712200			12093	134	6813	6813	15392;15393;15394	15393					0.010781133517184571
GTITGIARK	9	Unmodified	_GTITGIARK_					0	0	0		nc|ENSG00000160200|P35520-2|CBS;ENSG00000160200|ENST00000398165|CBS	nc|ENSG00000160200|P35520-2|CBS	nc|ENSG00000160200|P35520-2|CBS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7821044921875	2	458.782359	915.550165	-0.098313	-4.5104E-05	-0.22396	-0.00010275	-0.32227	-0.00014785	458.78221912735796	18.62	0.49949	18.62	18.479	18.978	0					41	17	3	0	0	0	0.19083	1	2004	2004		24.991	7.8781	1	115680			12094	5443	6814	6814	15395	15395					0.08901180025702615
GTITGIARK	9	Unmodified	_GTITGIARK_					0	0	0		nc|ENSG00000160200|P35520-2|CBS;ENSG00000160200|ENST00000398165|CBS	nc|ENSG00000160200|P35520-2|CBS	nc|ENSG00000160200|P35520-2|CBS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.78240966796875	2	458.782359	915.550165	-0.073703	-3.3814E-05	-0.13464	-6.177E-05	-0.20834	-9.5584E-05	458.78225633464507	18.798	0.58976	18.681	18.44	19.03	-0.11739					40	20	3	0	0	0	0.15763	1	2044	2044		29.841	12.728	1	119580			12095	5443	6814	6814	15396	15396					0.08901180025702615
GTITGIARK	9	Unmodified	_GTITGIARK_					0	0	0		nc|ENSG00000160200|P35520-2|CBS;ENSG00000160200|ENST00000398165|CBS	nc|ENSG00000160200|P35520-2|CBS	nc|ENSG00000160200|P35520-2|CBS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7823181152344	2	458.782359	915.550165	-0.17599	-8.0741E-05	0.2004	9.1939E-05	0.024407	1.1198E-05	458.78236556411855	18.715	0.59438	18.657	18.483	19.077	-0.058174					38	20	3	0	0	0	0.15763	1	2040	2040		29.841	12.728	1	111430			12096	5443	6814	6814	15397	15397					0.08901180025702615
GTITPKISK	9	Unmodified	_GTITPKISK_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7922058105469	2	472.792392	943.570232	0.23342	0.00011036	-0.97516	-0.00046105	-0.74174	-0.00035069	472.7917585055376	20.929	0.88901	20.929	20.542	21.431	0					66	30	3	0	0	0	0.013404	2	2708	2662;2708		74.2	30.427	1	345900			12097	5110	6815	6815	15398;15399	15399					0.09618930965655181
GTITPKISK	9	Unmodified	_GTITPKISK_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7921142578125	2	472.792392	943.570232	0.45803	0.00021655	-1.1298	-0.00053415	-0.67174	-0.0003176	472.79166458310453	21.091	0.85318	20.981	20.609	21.462	-0.11003					60	29	3	0	0	0	0.013404	2	2727	2727;2780		74.2	30.427	1	403460			12098	5110	6815	6815	15400;15401	15400					0.09618930965655181
GTITPKISK	9	Unmodified	_GTITPKISK_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7922058105469	2	472.792392	943.570232	0.38958	0.00018419	-1.2935	-0.00061154	-0.90389	-0.00042735	472.79160188999055	21.036	0.98631	20.983	20.584	21.571	-0.05291					69	34	4	0	0	0	0.0023309	3	2722	2706;2722;2761		107.56	49.841	1	393190			12099	5110	6815	6815	15402;15403;15404	15403					0.09618930965655181
GTIVQIVINNK	11	Unmodified	_GTIVQIVINNK_					0	0	0		ENSG00000101938|ENST00000372042|CHRDL1;nc|ENSG00000101938|Q9BU40-3|CHRDL1;nc|ENSG00000101938|Q9BU40|CHRDL1;nc|ENSG00000101938|Q9BU40-5|CHRDL1	ENSG00000101938|ENST00000372042|CHRDL1	ENSG00000101938|ENST00000372042|CHRDL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.8154907226562	2	599.861338	1197.70812	0.46433	0.00027853	-0.43183	-0.00025904	0.032498	1.9494E-05	599.8609871443416	53.46	0.30706	53.451	53.278	53.585	-0.0096092					27	11	3	0	0	0	0.28319	1	12568	12568		27.088	16.264	1	261580			12100	1730	6816	6816	15405	15405					0.11717634494266349
GTIVQIVINNK	11	Unmodified	_GTIVQIVINNK_					0	0	0		ENSG00000101938|ENST00000372042|CHRDL1;nc|ENSG00000101938|Q9BU40-3|CHRDL1;nc|ENSG00000101938|Q9BU40|CHRDL1;nc|ENSG00000101938|Q9BU40-5|CHRDL1	ENSG00000101938|ENST00000372042|CHRDL1	ENSG00000101938|ENST00000372042|CHRDL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	599.861338	1197.70812	0.58612	0.00035159	-0.89564	-0.00053726	-0.30952	-0.00018567	599.8604049337935	53.319	0.31966	53.319	53.148	53.468	0	-0.063523	-0.00041045	NaN	32.898	28	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250580			12101	1730	6816	6816							0.11717634494266349
GTIVQIVINNK	11	Unmodified	_GTIVQIVINNK_					0	0	0		ENSG00000101938|ENST00000372042|CHRDL1;nc|ENSG00000101938|Q9BU40-3|CHRDL1;nc|ENSG00000101938|Q9BU40|CHRDL1;nc|ENSG00000101938|Q9BU40-5|CHRDL1	ENSG00000101938|ENST00000372042|CHRDL1	ENSG00000101938|ENST00000372042|CHRDL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	599.861338	1197.70812	0.59905	0.00035935	-0.47711	-0.0002862	0.12195	7.3151E-05	599.8607529585927	53.321	0.34204	53.378	53.167	53.509	0.056255	-0.0047891	9.1677E-05	NaN	32.898	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290640			12102	1730	6816	6816							0.11717634494266349
GTKEDVDVLK	10	Unmodified	_GTKEDVDVLK_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8347778320312	2	552.300778	1102.587	0.22014	0.00012158	1.2612	0.00069659	1.4814	0.00081817	552.3015710603225	25.638	0.38537	25.638	25.413	25.798	0					17	12	2	0	0	0	0.30815	1	4107	4107		21.799	14.191	1	122590			12103	514	6817	6817	15406	15406					0.03981387060935049
GTKEDVDVLK	10	Unmodified	_GTKEDVDVLK_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.83447265625	2	552.300778	1102.587	0.092837	5.1274E-05	0.86388	0.00047712	0.95672	0.0005284	552.3015352983273	25.679	0.38635	25.657	25.416	25.802	-0.022238					19	13	2	0	0	0	0.28694	1	4119	4119		29.281	19.207	1	114710			12104	514	6817	6817	15407	15407					0.03981387060935049
GTKEDVDVLK	10	Unmodified	_GTKEDVDVLK_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	552.300778	1102.587	0.10336	5.7084E-05	0.51643	0.00028522	0.61979	0.00034231	552.3011145580853	25.645	0.33741	25.589	25.395	25.732	-0.055931	-0.039089	-0.00050502	NaN	29.281	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120170			12105	514	6817	6817							0.03981387060935049
GTKFVPFSFSL	11	Unmodified	_GTKFVPFSFSL_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2;ENST00000543687.1_1_12:124241315-124242576:+|nuORF	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2271423339844	3	410.557013	1228.64921	-0.20302	-8.335E-05	1.6209	0.00066547	1.4179	0.00058212	410.5576323733222	23.667	0.65461	23.667	23.48	24.134	0					32	22	2	0	0	0	0.32477	1	3507	3507		9.2438	2.2067	1	161430			12106	7526	6818	6818	15408	15408					0.04403158199943391
GTKKELSIL	9	Unmodified	_GTKKELSIL_					0	0	0		ENSG00000198169|ENST00000292562|ZNF251	ENSG00000198169|ENST00000292562|ZNF251	ENSG00000198169|ENST00000292562|ZNF251	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.78955078125	2	494.8055	987.596446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.579	1	84.579	84.079	85.079	0								0	0	0	0.25197	1	22176	22176		5.7319	0.97584	1				12107	8044	6819	6819	15409	15409					0.10215200137145075
GTKLPGLLK	9	Unmodified	_GTKLPGLLK_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.2298583984375	2	463.805303	925.596052	-0.53885	-0.00024992	1.0586	0.000491	0.51977	0.00024107	463.8055990287455	35.341	0.37771	35.341	35.17	35.547	0					33	13	3	0	0	0	0.090256	1	7088	7088		57.722	25.416	1	549930			12108	5511	6820	6820	15410	15410					0.1302782520793926
GTKLPGLLK	9	Unmodified	_GTKLPGLLK_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.2299499511719	2	463.805303	925.596052	-0.52421	-0.00024313	0.79626	0.00036931	0.27205	0.00012618	463.80544254219194	35.231	0.4397	35.306	35.123	35.563	0.075306					31	15	3	0	0	0	0.12329	1	7069	7069		49.554	25.534	1	551820			12109	5511	6820	6820	15411	15411					0.1302782520793926
GTKLPGLLK	9	Unmodified	_GTKLPGLLK_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.2299499511719	2	463.805303	925.596052	-0.60025	-0.0002784	1.2992	0.00060259	0.69898	0.00032419	463.805572363855	35.182	0.41832	35.26	35.141	35.559	0.077377					30	14	3	0	0	0	0.17696	1	7059	7059		36.506	12.486	1	546340			12110	5511	6820	6820	15412	15412					0.1302782520793926
GTLASVYHK	9	Unmodified	_GTLASVYHK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.26715087890625	2	488.266542	974.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.931	1	22.931	22.431	23.431	0								0	0	0	0.055092	1	3294	3294		59.368	28.732	1				12111	1556	6821	6821	15413	15413					0.030251872717599326
GTLASVYHK	9	Unmodified	_GTLASVYHK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.267333984375	2	488.266542	974.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.016	1	22.928	22.428	23.428	-0.087608								0	0	0	0.0079895	1	3323	3323		83.429	49.027	1				12112	1556	6821	6821	15414	15414					0.030251872717599326
GTLASVYHK	9	Unmodified	_GTLASVYHK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.26739501953125	2	488.266542	974.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.02	1	22.975	22.475	23.475	-0.044867								0	0	0	0.010523	1	3319	3319		79.596	41.622	1				12113	1556	6821	6821	15415	15415					0.030251872717599326
GTLDFYMARL	10	Oxidation (M)	_GTLDFYM(Oxidation (M))ARL_		GTLDFYM(1)ARL		GTLDFYM(100)ARL	0	0	1		ENST00000461099.1_1_19:3576912-3578370:+|nuORF;nc|ENSG00000064961|Q9P0W2-2|HMG20B;ENST00000488973.6_1_19:3574329-3578516:+|nuORF;nc|ENSG00000064961|Q9P0W2-3|HMG20B;ENSG00000064961|ENST00000333651|HMG20B	ENST00000461099.1_1_19:3576912-3578370:+|nuORF	ENST00000461099.1_1_19:3576912-3578370:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.797607421875	2	601.797349	1201.58014	0.67198	0.0004044	-2.0356	-0.001225	-1.3636	-0.0008206	601.7962183307961	60.843	1.3151	60.843	60.495	61.81	0					144	48	4	0	0	0	0.0035533	2	15022	15022;15075		100.09	68.822	1	8167100			12114	800	6822	6822	15416;15417	15416		101			-0.0125824909127914
GTLDFYMARL	10	Oxidation (M)	_GTLDFYM(Oxidation (M))ARL_		GTLDFYM(1)ARL		GTLDFYM(90)ARL	0	0	1		ENST00000461099.1_1_19:3576912-3578370:+|nuORF;nc|ENSG00000064961|Q9P0W2-2|HMG20B;ENST00000488973.6_1_19:3574329-3578516:+|nuORF;nc|ENSG00000064961|Q9P0W2-3|HMG20B;ENSG00000064961|ENST00000333651|HMG20B	ENST00000461099.1_1_19:3576912-3578370:+|nuORF	ENST00000461099.1_1_19:3576912-3578370:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.797119140625	2	601.797349	1201.58014	0.63869	0.00038436	-1.9214	-0.0011563	-1.2828	-0.00077196	601.7963858625819	60.837	1.4496	60.934	60.528	61.978	0.096985					139	52	4	0	0	0	0.005261	1	15043	15043		90.135	53.629	1	7278300			12115	800	6822	6822	15418	15418		101			-0.0125824909127914
GTLDFYMARL	10	Oxidation (M)	_GTLDFYM(Oxidation (M))ARL_		GTLDFYM(1)ARL		GTLDFYM(110)ARL	0	0	1		ENST00000461099.1_1_19:3576912-3578370:+|nuORF;nc|ENSG00000064961|Q9P0W2-2|HMG20B;ENST00000488973.6_1_19:3574329-3578516:+|nuORF;nc|ENSG00000064961|Q9P0W2-3|HMG20B;ENSG00000064961|ENST00000333651|HMG20B	ENST00000461099.1_1_19:3576912-3578370:+|nuORF	ENST00000461099.1_1_19:3576912-3578370:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.79736328125	2	601.797349	1201.58014	0.52908	0.0003184	-1.9437	-0.0011697	-1.4146	-0.00085131	601.7962637272518	60.907	1.382	60.898	60.572	61.954	-0.0094566					135	50	4	0	0	0	0.0017661	1	15021	15021		110.55	66.78	1	9961400			12116	800	6822	6822	15419	15419		101			-0.0125824909127914
GTLDSVLRY	9	Unmodified	_GTLDSVLRY_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.277099609375	2	512.277106	1022.53966	0.64266	0.00032922	-0.17954	-9.1974E-05	0.46312	0.00023725	512.2770308976286	54.966	1.0074	54.966	54.651	55.658	0					98	36	4	0	0	0	0.0024096	2	13060	13060;13112		106.94	54.672	1	9621200			12117	4432	6823	6823	15420;15421	15420					0.029291525806115715
GTLDSVLRY	9	Unmodified	_GTLDSVLRY_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.27734375	2	512.277106	1022.53966	0.55105	0.00028229	-0.21887	-0.00011212	0.33217	0.00017017	512.2770082414459	54.87	1.1014	54.934	54.694	55.796	0.063206					94	40	4	0	0	0	0.0051609	1	13044	13044		103.35	47.176	1	10068000			12118	4432	6823	6823	15422	15422					0.029291525806115715
GTLDSVLRY	9	Unmodified	_GTLDSVLRY_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2776489257812	2	512.277106	1022.53966	0.50416	0.00025827	0.043837	2.2456E-05	0.548	0.00028073	512.2771203993356	55.055	0.95708	55.036	54.793	55.75	-0.019081					100	35	4	0	0	0	0.0045335	1	13147	13147		96.367	37.688	1	10511000			12119	4432	6823	6823	15423	15423					0.029291525806115715
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.79931640625	2	539.798206	1077.58186	0.82994	0.000448	-0.5928	-0.00031999	0.23714	0.00012801	539.7987665999502	54.929	1.5233	54.929	54.578	56.101	0					226	55	6	0	0	0	2.4232E-17	8	13065	13027;13065;13110;13160;13209;13257;13309;13358		223.81	87.478	1	212890000			12120	4331	6824	6824	15424;15425;15426;15427;15428;15429;15430;15431	15425					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.814453125	2	539.798206	1077.58186	0.64325	0.00034723	0.73339	0.00039588	1.3766	0.00074311	539.7981548322895	87.495	1.0005	87.495	86.809	87.81	0					55	44	2	0	0	0	0.24467	1	23124	23124		17.113	4.0704	1	73762			12121	4331	6824	6824	15432	15432					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8145141601562	2	539.798206	1077.58186	0.62551	0.00033765	1.2396	0.00066911	1.8651	0.0010068	540.3007072981771	88.379	0.5745	88.379	88.098	88.672	0					47	31	2	0	0	0	0.27726	1	23354	23354		12.241	2.1667	1	56384			12122	4331	6824	6824	15433	15433					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.266845703125	2	539.798206	1077.58186	0.47484	0.00025632	0.35798	0.00019324	0.83282	0.00044956	539.7984625855374	68.093	0.44106	68.093	67.809	68.25	0					23	15	2	0	0	0	0.18123	1	17167	17167		34.402	9.0024	1	203780			12123	4331	6824	6824	15434	15434					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8150024414062	2	539.798206	1077.58186	0.67985	0.00036698	1.4571	0.00078652	2.1369	0.0011535	540.3007879567505	85.84	1.5797	85.84	84.774	86.354	0					95	60	2	0	0	0	0.18123	1	22529	22529		34.402	5.3201	1	104630			12124	4331	6824	6824	15435	15435					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8184814453125	2	539.798206	1077.58186	0.37772	0.00020389	2.1013	0.0011343	2.479	0.0013382	540.3013324910042	93.289	0.37703	93.289	93.068	93.445	0					56	32	2	0	0	0	0.25123	1	24861	24861		12.241	2.1667	1	62723			12125	4331	6824	6824	15436	15436					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.9852294921875	2	539.798206	1077.58186	0.22504	0.00012148	2.3421	0.0012643	2.5672	0.0013857	540.3017805341096	96.256	0.39862	96.256	96.019	96.417	0					51	38	2	0	0	0	0.25431	1	25743	25743		9.3831	2.66	1	61485			12126	4331	6824	6824	15437	15437					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.798095703125	2	539.798206	1077.58186	0.75503	0.00040756	-0.64873	-0.00035019	0.10629	5.7376E-05	539.7987345690715	54.842	1.6654	54.905	54.566	56.231	0.063202					238	61	6	0	0	0	2.4232E-17	8	13011	13011;13053;13102;13151;13200;13254;13305;13360		223.81	87.478	1	244000000			12127	4331	6824	6824	15438;15439;15440;15441;15442;15443;15444;15445	15438					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8174438476562	2	539.798206	1077.58186	0.37069	0.0002001	0.36438	0.00019669	0.73507	0.00039679	539.7980309004245	75.932	0.29897	75.985	75.862	76.161	0.053421					14	10	2	0	0	0	0.22215	1	19510	19510		20.415	4.2654	1	97029			12128	4331	6824	6824	15446	15446					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8147583007812	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.585	1	87.672	87.172	88.172	0.08709								0	0	0	0.20651	1	23094	23094		20.415	4.2654	1				12129	4331	6824	6824	15447	15447					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7464599609375	2	539.798206	1077.58186	0.51186	0.0002763	0.94858	0.00051204	1.4604	0.00078834	539.7980221505771	57.048	0.89874	57.127	56.437	57.336	0.078674					50	33	2	0	0	0	0.099099	1	13638	13638		55.503	15.553	1	437650			12130	4331	6824	6824	15448	15448					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2630615234375	2	539.798206	1077.58186	0.4947	0.00026704	0.3733	0.00020151	0.868	0.00046855	539.7986279741358	71.601	0.68671	71.657	71.537	72.224	0.056572					35	24	2	0	0	0	0.24993	1	18352	18352		13.042	2.9685	1	204950			12131	4331	6824	6824	15449	15449					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3307495117188	2	539.798206	1077.58186	0.2305	0.00012442	1.6985	0.00091687	1.929	0.0010413	539.7991364686216	80.96	0.74344	81.025	80.603	81.346	0.065094					58	34	2	0	0	0	0.18936	1	21085	21085		32.786	3.7041	1	118310			12132	4331	6824	6824	15450	15450					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8325805664062	2	539.798206	1077.58186	0.63229	0.00034131	1.1168	0.00060287	1.7491	0.00094418	539.7987316460566	85.234	0.86381	85.315	85.021	85.884	0.080887					50	32	2	0	0	0	0.2422	1	22338	22338		14.405	0	1	111270			12133	4331	6824	6824	15451	15451					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.9853515625	2	539.798206	1077.58186	0.26272	0.00014182	1.8159	0.0009802	2.0786	0.001122	540.3011077165124	98.35	0.1873	98.411	98.355	98.542	0.061516					29	21	2	0	0	0	0.23235	1	26329	26329		16.149	2.2431	1	170480			12134	4331	6824	6824	15452	15452					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.9854736328125	2	539.798206	1077.58186	0.29664	0.00016012	1.6001	0.00086374	1.8967	0.0010239	540.3011018243102	97.211	0.24565	97.281	97.112	97.358	0.070465					33	23	2	0	0	0	0.24993	1	25985	25985		8.7454	0	1	70830			12135	4331	6824	6824	15453	15453					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.9854125976562	2	539.798206	1077.58186	0.25639	0.0001384	2.2237	0.0012003	2.4801	0.0013387	540.3014872463095	98.552	0.19038	98.614	98.504	98.694	0.061516					32	22	2	0	0	0	0.24688	1	26397	26397		14.838	0.93222	1	133040			12136	4331	6824	6824	15454	15454					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.9855346679688	2	539.798206	1077.58186	0.25151	0.00013577	2.8522	0.0015396	3.1037	0.0016754	540.3016431082061	98.774	0.26421	98.825	98.684	98.948	0.050888					46	33	2	0	0	0	0.24688	1	26465	26465		10.074	2.1638	1	76452			12137	4331	6824	6824	15455	15455					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.985595703125	2	539.798206	1077.58186	0.23987	0.00012948	2.6416	0.0014259	2.8815	0.0015554	540.3016926412688	99.396	0.13	99.447	99.365	99.495	0.050888					26	17	2	0	0	0	0.21538	1	26581	26581		26.268	9.1552	1	69110			12138	4331	6824	6824	15456	15456					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.9855346679688	2	539.798206	1077.58186	0.23956	0.00012932	2.4155	0.0013039	2.6551	0.0014332	540.3017489634647	99.147	0.19521	99.198	99.08	99.275	0.050896					37	25	2	0	0	0	0.20881	1	26525	26525		16.149	3.1066	1	54926			12139	4331	6824	6824	15457	15457					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.818115234375	2	539.798206	1077.58186	0.418	0.00022563	2.062	0.001113	2.48	0.0013387	540.3016812180763	93.128	0.13335	93.217	93.15	93.283	0.089195					21	12	2	0	0	0	0.24471	1	24785	24785		12.241	0	1	68584			12140	4331	6824	6824	15458	15458					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.9854736328125	2	539.798206	1077.58186	0.28371	0.00015314	2.4317	0.0013126	2.7154	0.0014658	539.7984763333184	97.597	0.24883	97.659	97.533	97.782	0.061516					38	29	2	0	0	0	0.22674	1	26097	26097		22.736	3.4793	1	56655			12141	4331	6824	6824	15459	15459					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7994995117188	2	539.798206	1077.58186	0.83955	0.00045319	-0.77064	-0.00041599	0.068912	3.7198E-05	539.7986285305687	55.05	2.8434	55.031	54.652	57.496	-0.018665					275	104	6	0	0	0	2.4232E-17	7	13145	13065;13098;13145;13196;13241;13290;13343		223.81	87.478	1	244800000			12142	4331	6824	6824	15460;15461;15462;15463;15464;15465;15466	15462					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8147583007812	2	539.798206	1077.58186	0.72054	0.00038895	1.915	0.0010337	2.6355	0.0014227	539.7989888501867	85.869	0.77885	85.86	85.455	86.234	-0.0090103					45	28	2	0	0	0	0.17277	1	22591	22591		27.629	4.8925	1	118550			12143	4331	6824	6824	15467	15467					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8145141601562	2	539.798206	1077.58186	0.63344	0.00034193	1.3745	0.00074195	2.0079	0.0010839	540.3009900798874	87.675	0.38892	87.669	87.46	87.849	-0.0056229					28	21	2	0	0	0	0.21447	2	23127	23127;23168		21.537	3.3906	1	132820			12144	4331	6824	6824	15468;15469	15468					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8147583007812	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.367	1	88.364	87.864	88.864	-0.0028381								0	0	0	0.20303	1	23327	23327		21.537	3.3906	1				12145	4331	6824	6824	15470	15470					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3297729492188	2	539.798206	1077.58186	0.73224	0.00039526	-0.30019	-0.00016204	0.43205	0.00023322	539.7973851527458	83.323	0.22512	83.302	83.226	83.451	-0.020584					15	8	2	0	0	0	0.21538	1	21769	21769		26.268	5.8145	1	96372			12146	4331	6824	6824	15471	15471					0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	539.798206	1077.58186	0.54763	0.00029561	-0.17147	-9.2562E-05	0.37616	0.00020305	540.2997834707686	71.677	1.1459	71.677	71.521	72.667	0	0.010099	-0.00028774	NaN	13.042	58	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145580			12147	4331	6824	6824							0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	539.798206	1077.58186	0.61014	0.00032935	1.9084	0.0010301	2.5185	0.0013595	539.7981337690965	57.066	0.72198	57.066	56.713	57.435	0	-0.030762	0.00055965	NaN	55.503	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	451370			12148	4331	6824	6824							0.046171279889904326
GTLDYILQR	9	Unmodified	_GTLDYILQR_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	539.798206	1077.58186	0.57448	0.0003101	1.9159	0.0010342	2.4904	0.0013443	540.300951678727	85.878	0.61906	85.962	85.696	86.315	0.084251	0.07494	0.00029144	NaN	27.629	30	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174130			12149	4331	6824	6824							0.046171279889904326
GTLEDQLSHLK	11	Unmodified	_GTLEDQLSHLK_					0	0	0		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.8302001953125	2	620.830234	1239.64592	0.64584	0.00040096	-0.57224	-0.00035526	0.073603	4.5695E-05	620.8298237137936	45.902	0.36327	45.902	45.666	46.029	0					19	12	2	0	0	0	0.066511	1	10314	10314		57.204	34.546	1	351700			12150	7	6825	6825	15472	15472					0.03567863355283407
GTLEDQLSHLK	11	Unmodified	_GTLEDQLSHLK_					0	0	0		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.8302612304688	2	620.830234	1239.64592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.653	1	45.713	45.213	46.213	0.059834								0	0	0	0.24244	1	10217	10217		33.821	16.379	1				12151	7	6825	6825	15473	15473					0.03567863355283407
GTLEDQLSHLK	11	Unmodified	_GTLEDQLSHLK_					0	0	0		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.2225646972656	3	414.222582	1239.64592	0.38251	0.00015845	-0.38178	-0.00015814	0.00073278	3.0353E-07	414.2223960900108	45.531	0.50758	45.596	45.274	45.782	0.065048					32	18	2	0	0	0	0.36266	1	10192	10192		16.137	16.137	1	374290			12152	7	6825	6825	15474	15474					0.03567863355283407
GTLEDQLSHLK	11	Unmodified	_GTLEDQLSHLK_					0	0	0		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	414.222582	1239.64592	0.33495	0.00013874	-0.69469	-0.00028776	-0.35974	-0.00014901	414.22237935946555	45.911	0.44427	45.911	45.694	46.138	0	0.2168	-0.00020178	NaN	16.137	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346900			12153	7	6825	6825							0.03567863355283407
GTLEDQLSHLK	11	Unmodified	_GTLEDQLSHLK_					0	0	0		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	414.222582	1239.64592	0.54347	0.00022512	-0.72603	-0.00030074	-0.18257	-7.5623E-05	414.22236562039586	45.516	0.48313	45.576	45.336	45.819	0.059834	-0.11868	-0.00024074	NaN	16.137	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	481070			12154	7	6825	6825							0.03567863355283407
GTLEDQLSHLK	11	Unmodified	_GTLEDQLSHLK_					0	0	0		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	620.830234	1239.64592	0.33904	0.00021048	-0.010106	-6.2741E-06	0.32893	0.00020421	620.8302380179349	45.525	0.36897	45.59	45.358	45.727	0.065048	-0.085218	8.736E-05	NaN	57.204	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351520			12155	7	6825	6825							0.03567863355283407
GTLELLNALTK	11	Unmodified	_GTLELLNALTK_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8486328125	2	586.847896	1171.68124	0.38999	0.00022886	0.30765	0.00018055	0.69764	0.00040941	586.8480689562364	68.932	0.57701	68.932	68.736	69.313	0					47	20	3	0	0	0	1.4992E-05	1	17417	17417		119.6	44.032	1	372040			12156	5917	6826	6826	15475	15475					0.10226525883081194
GTLELLNALTK	11	Unmodified	_GTLELLNALTK_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8480834960938	2	586.847896	1171.68124	0.39715	0.00023307	0.21234	0.00012461	0.60949	0.00035768	586.8479532414094	68.885	0.5886	68.957	68.729	69.318	0.071938					52	21	3	0	0	0	1.3918E-12	1	17367	17367		160.97	57.146	1	406220			12157	5917	6826	6826	15476	15476					0.10226525883081194
GTLELLNALTK	11	Unmodified	_GTLELLNALTK_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.848388671875	2	586.847896	1171.68124	0.35619	0.00020903	0.21151	0.00012412	0.5677	0.00033315	586.8480123059658	68.99	0.53101	68.971	68.739	69.27	-0.019157					40	18	3	0	0	0	1.4992E-05	1	17394	17394		119.6	35.08	1	350260			12158	5917	6826	6826	15477	15477					0.10226525883081194
GTLFSFISK	9	Unmodified	_GTLFSFISK_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2220458984375	2	500.279118	998.543683	0.43545	0.00021785	0.052271	2.615E-05	0.48772	0.000244	500.2791472302394	63.398	0.65892	63.398	63.168	63.826	0					30	23	2	0	0	0	0.21623	1	15733	15733		27.223	0	1	237630	+		12159	18850	6827	6827	15478	15478					0.04435242074350754
GTLFSFISK	9	Unmodified	_GTLFSFISK_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	500.279118	998.543683	0.49386	0.00024707	-0.17192	-8.6009E-05	0.32194	0.00016106	500.2794642118296	63.659	0.16943	63.755	63.681	63.851	0.095722	0.17841	-0.00020643	NaN	27.223	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74903	+		12160	18850	6827	6827							0.04435242074350754
GTLIDNQFK	9	Unmodified	_GTLIDNQFK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2771606445312	2	518.277106	1034.53966	0.56324	0.00029192	-0.48802	-0.00025293	0.075221	3.8985E-05	518.2768446283117	40.387	0.93513	40.387	40.104	41.039	0					68	33	3	0	0	0	4.8913E-11	3	8631	8581;8631;8681		187.3	111.54	1	2736300			12161	496	6828	6828	15479;15480;15481	15480					0.023771525806068894
GTLIDNQFK	9	Unmodified	_GTLIDNQFK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2770385742188	2	518.277106	1034.53966	0.54865	0.00028435	1.5889	0.00082348	2.1375	0.0011078	518.2767418219938	40.223	0.90955	40.316	39.943	40.852	0.092674					101	32	5	0	0	0	1.6536E-07	2	8565	8521;8565		173.69	91.796	1	2782900			12162	496	6828	6828	15482;15483	15483					0.023771525806068894
GTLIDNQFK	9	Unmodified	_GTLIDNQFK_					0	0	0		ENST00000469448.1_1_X:118673692-118676584:-|nuORF;nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	ENST00000469448.1_1_X:118673692-118676584:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2769775390625	2	518.277106	1034.53966	0.42505	0.00022029	1.2045	0.00062428	1.6296	0.00084458	518.2768630235088	40.194	0.98999	40.293	39.922	40.912	0.099407					102	35	4	0	0	0	3.4202E-05	2	8547	8503;8547		151.48	92.801	1	2760200			12163	496	6828	6828	15484;15485	15485					0.023771525806068894
GTLIESGIIGR	11	Unmodified	_GTLIESGIIGR_					0	0	0		nc|ENSG00000117528|P28288-3|ABCD3;nc|ENSG00000117528|P28288-2|ABCD3;ENSG00000117528|ENST00000370214|ABCD3	nc|ENSG00000117528|P28288-3|ABCD3	nc|ENSG00000117528|P28288-3|ABCD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3563842773438	2	558.324588	1114.63462	0.55058	0.0003074	0.57075	0.00031867	1.1213	0.00062607	558.3250531906365	50.92	0.29664	50.967	50.822	51.118	0.046574					15	10	2	0	0	0	0.32596	1	11867	11867		11.518	0	1	189830			12164	2799	6829	6829	15486	15486					0.081890860518115
GTLLGESLKLK	11	Unmodified	_GTLLGESLKLK_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.8585205078125	2	579.858264	1157.70197	0.40958	0.0002375	0.11825	6.8565E-05	0.52782	0.00030606	579.8582273275697	46.77	0.53918	46.77	46.514	47.053	0					41	18	3	0	0	0	0.060763	1	10562	10562		50.13	13.056	1	1202000			12165	4483	6830	6830	15487	15487					0.12943116262727017
GTLLGESLKLK	11	Unmodified	_GTLLGESLKLK_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.2841796875	2	579.858264	1157.70197	0.49567	0.00028742	0.12575	7.2915E-05	0.62142	0.00036034	579.8582054984017	46.587	0.5148	46.64	46.44	46.955	0.05257					40	18	3	0	0	0	0.2382	1	10512	10512		46.475	8.7039	1	957860			12166	4483	6830	6830	15488	15488					0.12943116262727017
GTLLGESLKLK	11	Unmodified	_GTLLGESLKLK_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2838745117188	2	579.858264	1157.70197	0.31195	0.00018089	0.33596	0.00019481	0.64791	0.0003757	579.858299997383	46.603	0.62554	46.657	46.492	47.117	0.054371					41	21	3	0	0	0	0.2115	1	10520	10520		53.47	18.537	1	1150200			12167	4483	6830	6830	15489	15489					0.12943116262727017
GTLMSLPTK	9	Oxidation (M)	_GTLM(Oxidation (M))SLPTK_		GTLM(1)SLPTK		GTLM(42)SLPTK	0	0	1		ENST00000398421.6_1_7:74191697-74197664:+|nuORF;ENST00000449343.6_1_7:74188378-74197664:+|nuORF;nc|ENSG00000290838|A6NI72|NCF1B	ENST00000398421.6_1_7:74191697-74197664:+|nuORF	ENST00000398421.6_1_7:74191697-74197664:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.24847412109375	2	482.26261	962.510668	0.0025126	1.2117E-06	0.15273	7.3654E-05	0.15524	7.4866E-05	482.26268642205935	31.505	0.57421	31.547	31.078	31.652	0.042366					34	20	2	0	0	0	0.07848	1	5831	5831		42.312	23.055	1	310840			12168	10162	6831	6831	15490	15490		939			0.027912919599771158
GTLMWHQMK	9	2 Oxidation (M)	_GTLM(Oxidation (M))WHQM(Oxidation (M))K_		GTLM(1)WHQM(1)K		GTLM(120)WHQM(120)K	0	0	2		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.2705688476562	2	582.270444	1162.52633	0.058151	3.3859E-05	-0.85081	-0.0004954	-0.79265	-0.00046154	582.2705691071304	22.972	0.99911	22.972	22.594	23.593	0					87	34	4	0	0	0	0.0013036	2	3314	3267;3314		118.89	86.589	1	656770			12169	9563	6832	6832	15491;15492	15492		928;929			-0.048427447946096436
GTLMWHQMK	9	2 Oxidation (M)	_GTLM(Oxidation (M))WHQM(Oxidation (M))K_		GTLM(1)WHQM(1)K		GTLM(86)WHQM(86)K	0	0	2		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.2705078125	2	582.270444	1162.52633	0.082454	4.8011E-05	-0.49955	-0.00029087	-0.41709	-0.00024286	582.270495385672	23.086	0.91973	22.998	22.628	23.548	-0.08761					91	32	5	0	0	0	0.0059482	2	3365	3316;3365		85.642	53.336	1	772280			12170	9563	6832	6832	15493;15494	15494		928;929			-0.048427447946096436
GTLMWHQMK	9	2 Oxidation (M)	_GTLM(Oxidation (M))WHQM(Oxidation (M))K_		GTLM(1)WHQM(1)K		GTLM(96)WHQM(96)K	0	0	2		ENST00000352767.7_2_3:184032446-184033585:+|nuORF;ENST00000346169.6_1_3:184032401-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	ENST00000352767.7_2_3:184032446-184033585:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.2704467773438	2	582.270444	1162.52633	0.24309	0.00014154	-0.9437	-0.00054949	-0.70061	-0.00040794	582.2704290827261	23.094	0.8771	23.049	22.679	23.556	-0.044867					75	31	4	0	0	0	0.0037772	2	3357	3310;3357		96.111	70.712	1	801580			12171	9563	6832	6832	15495;15496	15496		928;929			-0.048427447946096436
GTLNQPLTK	9	Unmodified	_GTLNQPLTK_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2796630859375	2	486.279649	970.544745	0.144	7.0024E-05	0.20313	9.8778E-05	0.34713	0.0001688	486.27967341805953	26.519	0.68358	26.519	26.242	26.925	0					59	23	4	0	0	0	3.4202E-05	2	4363	4363;4414		151.48	81.148	1	485040			12172	1849	6833	6833	15497;15498	15497					0.0582945644322308
GTLNQPLTK	9	Unmodified	_GTLNQPLTK_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2796630859375	2	486.279649	970.544745	0.16927	8.2313E-05	0.19098	9.287E-05	0.36025	0.00017518	486.27963726457955	26.509	0.7012	26.47	26.178	26.879	-0.038671					56	24	3	0	0	0	0.00010651	2	4374	4374;4425		139.78	78.18	1	607460			12173	1849	6833	6833	15499;15500	15499					0.0582945644322308
GTLNQPLTK	9	Unmodified	_GTLNQPLTK_					0	0	0		ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	ENSG00000103671|ENST00000261884|TRIP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2798156738281	2	486.279649	970.544745	0.42532	0.00020682	-0.1392	-6.7691E-05	0.28611	0.00013913	486.2795231852212	26.489	0.68126	26.467	26.236	26.918	-0.022238					56	23	3	0	0	0	5.7869E-11	2	4366	4366;4419		184.36	98.714	1	613330			12174	1849	6833	6833	15501;15502	15501					0.0582945644322308
GTLQPPFTAR	10	Unmodified	_GTLQPPFTAR_					0	0	0		ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2986450195312	2	544.298373	1086.58219	0.42154	0.00022944	-0.14259	-7.7611E-05	0.27895	0.00015183	544.2981719873717	43.948	0.99365	43.948	43.414	44.408	0					90	36	3	0	0	0	0.067194	2	9710	9710;9757		55.249	11.267	1	1190300			12175	7506	6834	6834	15503;15504	15503					0.04236547708865146
GTLQPPFTAR	10	Unmodified	_GTLQPPFTAR_					0	0	0		ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2986450195312	2	544.298373	1086.58219	0.62839	0.00034203	-0.26631	-0.00014495	0.36208	0.00019708	544.2980816950324	43.933	1.2316	44.01	43.155	44.387	0.077518					106	45	3	0	0	0	0.067194	2	9703	9655;9703		55.249	17.073	1	1185600			12176	7506	6834	6834	15505;15506	15506					0.04236547708865146
GTLQPPFTAR	10	Unmodified	_GTLQPPFTAR_					0	0	0		ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2987060546875	2	544.298373	1086.58219	0.63634	0.00034636	-0.24961	-0.00013586	0.38673	0.00021049	544.2980877684935	43.801	1.2053	43.885	43.166	44.371	0.083996					102	44	3	0	0	0	0.17449	1	9650	9650		60.899	29.631	1	1296100			12177	7506	6834	6834	15507	15507					0.04236547708865146
GTLSALDILIK	11	Unmodified	_GTLSALDILIK_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3532104492188	2	572.352814	1142.69108	0.33351	0.00019089	0.64644	0.00036999	0.97995	0.00056087	572.3532287633055	72.534	0.53452	72.534	72.32	72.855	0					45	19	3	0	0	0	0.0035703	1	18504	18504		83.278	42.553	1	396680			12178	2367	6835	6835	15508	15508					0.12543713888476304
GTLSALDILIK	11	Unmodified	_GTLSALDILIK_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.3535766601562	2	572.352814	1142.69108	0.49758	0.00028479	0.34852	0.00019948	0.8461	0.00048427	572.3531427232796	72.525	0.54504	72.579	72.326	72.871	0.053833					46	19	3	0	0	0	0.0035703	1	18509	18509		83.278	35.546	1	379620			12179	2367	6835	6835	15509	15509					0.12543713888476304
GTLSALDILIK	11	Unmodified	_GTLSALDILIK_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3531494140625	2	572.352814	1142.69108	0.37439	0.00021428	0.44432	0.00025431	0.81871	0.00046859	572.3531856620014	72.625	0.56908	72.596	72.332	72.901	-0.029305					39	19	3	0	0	0	0.12764	1	18519	18519		70.929	33.854	1	379720			12180	2367	6835	6835	15510	15510					0.12543713888476304
GTLSGWILSK	10	Unmodified	_GTLSGWILSK_					0	0	0		nc|ENSG00000127022|P27824-2|CANX;ENSG00000127022|ENST00000247461|CANX	nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-2|CANX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3035278320312	2	531.303124	1060.5917	0.55976	0.0002974	0.065446	3.4772E-05	0.6252	0.00033217	531.3032681654497	58.728	0.85712	58.728	58.439	59.297	0					93	29	4	0	0	0	3.4983E-06	2	14238	14238;14284		154.75	97.503	1	3935800			12181	3303	6836	6836	15511;15512	15511					0.06382315994369492
GTLSGWILSK	10	Unmodified	_GTLSGWILSK_					0	0	0		nc|ENSG00000127022|P27824-2|CANX;ENSG00000127022|ENST00000247461|CANX	nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-2|CANX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3033447265625	2	531.303124	1060.5917	0.4312	0.0002291	0.21093	0.00011207	0.64213	0.00034117	531.3033300485594	58.515	0.98356	58.607	58.228	59.211	0.091301					98	34	4	0	0	0	3.3863E-05	2	14171	14171;14235		135.86	84.448	1	2960700			12182	3303	6836	6836	15513;15514	15513					0.06382315994369492
GTLSGWILSK	10	Unmodified	_GTLSGWILSK_					0	0	0		nc|ENSG00000127022|P27824-2|CANX;ENSG00000127022|ENST00000247461|CANX	nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-2|CANX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3035278320312	2	531.303124	1060.5917	0.5968	0.00031708	-0.084706	-4.5005E-05	0.5121	0.00027208	531.303245352597	58.794	0.75221	58.78	58.47	59.222	-0.014267					87	26	4	0	0	0	3.3863E-05	2	14258	14258;14302		135.86	82.556	1	2806600			12183	3303	6836	6836	15515;15516	15515					0.06382315994369492
GTLSKKHW	8	Unmodified	_GTLSKKHW_					0	0	0		ENST00000218200.12_1_X:147031414-147031534:+|nuORF	ENST00000218200.12_1_X:147031414-147031534:+|nuORF	ENST00000218200.12_1_X:147031414-147031534:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.3019714355469	2	478.769252	955.52395	-0.022235	-1.0645E-05	-4.3785	-0.0020963	-4.4008	-0.002107	478.76679940643703	12.234	0.21823	12.137	12.018	12.236	-0.096607					11	8	2	0	0	0	0.46491	1	44	44		0.69038	0	1	48841			12184	8828	6837	6837	15517	15517					0.0444091085423679
GTLSSWNLK	9	Unmodified	_GTLSSWNLK_					0	0	0		ENST00000380319.2_1_X:15782817-15782931:+|nuORF;ENST00000435806.2_1_X:15706900-15713817:+|nuORF;ENST00000380336.5_1_X:15706900-15715389:+|nuORF;nc|ENSG00000290746|Q8WTZ4|CA5BP1;ENST00000380334.6_1_X:15706900-15721312:+|nuORF	ENST00000380319.2_1_X:15782817-15782931:+|nuORF	ENST00000380319.2_1_X:15782817-15782931:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7798767089844	2	503.271824	1004.5291	0.54641	0.00027499	-0.19108	-9.6166E-05	0.35533	0.00017883	503.27172269020207	44.644	1.1666	44.644	44.039	45.206	0					89	42	3	0	0	0	0.11018	1	9893	9893		53.404	37.557	1	855010			12185	9983	6838	6838	15518	15518					0.02701169926183411
GTLSSWNLK	9	Unmodified	_GTLSSWNLK_					0	0	0		ENST00000380319.2_1_X:15782817-15782931:+|nuORF;ENST00000435806.2_1_X:15706900-15713817:+|nuORF;ENST00000380336.5_1_X:15706900-15715389:+|nuORF;nc|ENSG00000290746|Q8WTZ4|CA5BP1;ENST00000380334.6_1_X:15706900-15721312:+|nuORF	ENST00000380319.2_1_X:15782817-15782931:+|nuORF	ENST00000380319.2_1_X:15782817-15782931:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7796325683594	2	503.271824	1004.5291	0.48217	0.00024266	-0.32439	-0.00016326	0.15778	7.9406E-05	503.27161053251064	44.48	0.93204	44.548	43.911	44.843	0.068573					76	34	3	0	0	0	0.082647	1	9815	9815		61.602	32.52	1	859250			12186	9983	6838	6838	15519	15519					0.02701169926183411
GTLSSWNLK	9	Unmodified	_GTLSSWNLK_					0	0	0		ENST00000380319.2_1_X:15782817-15782931:+|nuORF;ENST00000435806.2_1_X:15706900-15713817:+|nuORF;ENST00000380336.5_1_X:15706900-15715389:+|nuORF;nc|ENSG00000290746|Q8WTZ4|CA5BP1;ENST00000380334.6_1_X:15706900-15721312:+|nuORF	ENST00000380319.2_1_X:15782817-15782931:+|nuORF	ENST00000380319.2_1_X:15782817-15782931:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.77972412109375	2	503.271824	1004.5291	0.37465	0.00018855	-0.31686	-0.00015946	0.057796	2.9087E-05	503.271649318195	44.238	1.1535	44.313	43.782	44.935	0.075047					87	42	3	0	0	0	0.075068	1	9794	9794		57.249	30.981	1	874740			12187	9983	6838	6838	15520	15520					0.02701169926183411
GTLTFFKNRK	10	Unmodified	_GTLTFFKNRK_					0	0	0		ENST00000569380.5_1_16:1827100-1828231:-|nuORF;ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3	ENST00000569380.5_1_16:1827100-1828231:-|nuORF	ENST00000569380.5_1_16:1827100-1828231:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.56805419921875	3	404.568024	1210.68224	-0.23429	-9.4785E-05	1.1575	0.00046827	0.92316	0.00037348	404.56808654431495	28.71	0.65088	28.706	28.467	29.118	-0.0042572					35	22	2	0	0	0	0.33594	1	5017	5017		13.519	5.0744	1	211900			12188	5543	6839	6839	15521	15521					0.08532785042643809
GTLTPARQK	9	Unmodified	_GTLTPARQK_					0	0	0		ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000485648.5_1_22:41980283-41985809:-|nuORF	ENST00000485648.5_1_22:41980283-41985809:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2854309082031	2	486.285266	970.555979	-0.072835	-3.5418E-05	0.36709	0.00017851	0.29426	0.00014309	486.28551664368763	13.73	0.53979	13.73	13.484	14.024	0					52	18	4	0	0	0	0.17242	1	490	490		36.127	5.4905	1	328340			12189	1592	6840	6840	15522	15522					0.06952278537380607
GTLTPARQK	9	Unmodified	_GTLTPARQK_					0	0	0		ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000485648.5_1_22:41980283-41985809:-|nuORF	ENST00000485648.5_1_22:41980283-41985809:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2851867675781	2	486.285266	970.555979	-0.1125	-5.4707E-05	-1.7353	-0.00084385	-1.8478	-0.00089855	486.2854525812089	13.778	0.5561	13.673	13.435	13.991	-0.10466					91	19	7	0	0	0	0.18936	1	511	511		26.268	0	1	395130			12190	1592	6840	6840	15523	15523					0.06952278537380607
GTLTPARQK	9	Unmodified	_GTLTPARQK_					0	0	0		ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF;ENSG00000100417|ENST00000216259|PMM1	ENST00000485648.5_1_22:41980283-41985809:-|nuORF	ENST00000485648.5_1_22:41980283-41985809:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2854919433594	2	486.285266	970.555979	-0.070155	-3.4115E-05	0.33588	0.00016333	0.26572	0.00012922	486.2854964874469	13.791	0.53306	13.725	13.444	13.977	-0.066068					47	18	3	0	0	0	0.14646	1	513	513		43.772	5.5968	1	360060			12191	1592	6840	6840	15524	15524					0.06952278537380607
GTLTQNEMIFK	11	Oxidation (M)	_GTLTQNEM(Oxidation (M))IFK_		GTLTQNEM(1)IFK		GTLTQNEM(270)IFK	0	0	1		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A;ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B	nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000166377|ENST00000426216|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.3268432617188	2	649.32647	1296.63839	0.44808	0.00029095	0.36214	0.00023515	0.81021	0.00052609	649.3264514677601	43.216	0.92234	43.216	42.871	43.793	0					60	33	2	0	0	0	6.0576E-45	3	9480	9429;9480;9527		265.37	225.42	1	1691700			12192	6070;694	6841	6841	15525;15526;15527	15526		86			0.0019338776332915586
GTLTQNEMIFK	11	Oxidation (M)	_GTLTQNEM(Oxidation (M))IFK_		GTLTQNEM(1)IFK		GTLTQNEM(240)IFK	0	0	1		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A;ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B	nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000166377|ENST00000426216|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.3265991210938	2	649.32647	1296.63839	0.38092	0.00024734	0.47693	0.00030968	0.85785	0.00055702	649.3265066566518	42.945	0.84621	43.03	42.676	43.522	0.085201					58	30	2	0	0	0	1.7971E-34	3	9346	9346;9398;9444		240.78	200.83	1	1636500			12193	6070;694	6841	6841	15528;15529;15530	15528		86			0.0019338776332915586
GTLTQNEMIFK	11	Oxidation (M)	_GTLTQNEM(Oxidation (M))IFK_		GTLTQNEM(1)IFK		GTLTQNEM(240)IFK	0	0	1		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A;ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B	nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000166377|ENST00000426216|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.3264770507812	2	649.32647	1296.63839	0.1205	7.8245E-05	0.5862	0.00038064	0.7067	0.00045888	649.3266260476576	42.783	0.86689	42.874	42.633	43.499	0.091362					58	31	2	0	0	0	1.7971E-34	3	9319	9319;9364;9413		240.78	208	1	1634800			12194	6070;694	6841	6841	15531;15532;15533	15531		86			0.0019338776332915586
GTLTQVFGF	9	Unmodified	_GTLTQVFGF_					0	0	0			REV__nc|ENSG00000185513|Q9Y468-2|L3MBTL1	REV__nc|ENSG00000185513|Q9Y468-2|L3MBTL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8004150390625	2	485.255643	968.496732	0.17934	8.7028E-05	-0.09082	-4.4071E-05	0.088524	4.2957E-05	485.25555859631754	52.093	0.46059	52.093	51.836	52.296	0					25	16	2	0	0	0	0.2451	1	12223	12223		10.824	4.6181	1	210690	+		12195	18385	6842	6842	15534	15534					0.011223825231923001
GTMDMSITRL	10	2 Oxidation (M)	_GTM(Oxidation (M))DM(Oxidation (M))SITRL_		GTM(1)DM(1)SITRL		GTM(120)DM(120)SITRL	0	0	2		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000485325.1_1_2:112560984-112579093:-|nuORF;ENST00000454465.1_1_2:87355723-87398314:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7701416015625	2	578.770474	1155.52639	-0.84315	-0.00048799	0.21024	0.00012168	-0.6329	-0.00036631	578.7707590286143	35.004	1.238	35.004	34.618	35.856	0					114	44	3	0	0	0	0.00094814	3	6979	6979;7030;7077		121.5	90.867	1	4864200			12196	5060	6843	6843	15535;15536;15537	15535		623;624			-0.045147895852778674
GTMDMSITRL	10	2 Oxidation (M)	_GTM(Oxidation (M))DM(Oxidation (M))SITRL_		GTM(1)DM(1)SITRL		GTM(130)DM(130)SITRL	0	0	2		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000485325.1_1_2:112560984-112579093:-|nuORF;ENST00000454465.1_1_2:87355723-87398314:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.770263671875	2	578.770474	1155.52639	-0.86023	-0.00049788	0.093779	5.4276E-05	-0.76646	-0.0004436	578.7707593396434	34.92	1.2624	34.996	34.604	35.867	0.075306					127	45	4	0	0	0	0.00015406	3	7009	6959;7009;7065		132.13	104.51	1	5037900			12197	5060	6843	6843	15538;15539;15540	15539		623;624			-0.045147895852778674
GTMDMSITRL	10	2 Oxidation (M)	_GTM(Oxidation (M))DM(Oxidation (M))SITRL_		GTM(1)DM(1)SITRL		GTM(130)DM(130)SITRL	0	0	2		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000485325.1_1_2:112560984-112579093:-|nuORF;ENST00000454465.1_1_2:87355723-87398314:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.7702026367188	2	578.770474	1155.52639	-0.68149	-0.00039442	0.22388	0.00012957	-0.45761	-0.00026485	578.7707238714524	34.851	1.0267	34.928	34.561	35.588	0.077377					99	36	3	0	0	0	0.00015406	4	6938	6938;6980;7025;7073		132.13	99.349	1	5035300			12198	5060	6843	6843	15541;15542;15543;15544	15541		623;624			-0.045147895852778674
GTMEWIMIK	9	2 Oxidation (M)	_GTM(Oxidation (M))EWIM(Oxidation (M))IK_		GTM(1)EWIM(1)IK		GTM(120)EWIM(120)IK	0	0	2		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.7752075195312	2	570.775028	1139.5355	0.4116	0.00023493	-0.35262	-0.00020127	0.058971	3.3659E-05	570.7749179499773	48.489	0.75195	48.489	48.131	48.883	0					66	26	3	0	0	0	0.0013683	2	11043	11043;11097		118.07	99.922	1	3743400			12199	6261	6844	6844	15545;15546	15545		739;740			-0.02868396228950587
GTMEWIMIK	9	2 Oxidation (M)	_GTM(Oxidation (M))EWIM(Oxidation (M))IK_		GTM(1)EWIM(1)IK		GTM(120)EWIM(120)IK	0	0	2		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7749633789062	2	570.775028	1139.5355	0.71938	0.00041061	-0.73075	-0.00041709	-0.011369	-6.4891E-06	570.7747410173037	48.417	0.6723	48.464	48.181	48.854	0.04752					78	24	4	0	0	0	0.0013683	2	11050	11050;11094		118.07	99.922	1	3393900			12200	6261	6844	6844	15547;15548	15547		739;740			-0.02868396228950587
GTMEWIMIK	9	2 Oxidation (M)	_GTM(Oxidation (M))EWIM(Oxidation (M))IK_		GTM(1)EWIM(1)IK		GTM(110)EWIM(110)IK	0	0	2		ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	ENSG00000168273|ENST00000477703|UQCC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.775634765625	2	570.775028	1139.5355	0.46089	0.00026306	-0.24867	-0.00014194	0.21221	0.00012113	570.7749298563048	48.371	0.63245	48.415	48.121	48.754	0.04332					60	23	3	0	0	0	0.0024096	2	11011	11011;11056		106.94	88.794	1	3787200			12201	6261	6844	6844	15549;15550	15549		739;740			-0.02868396228950587
GTMFLVVGVTS	11	Unmodified	_GTMFLVVGVTS_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.796630859375	2	555.796817	1109.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.95	1	119.92	119.42	120.42	-0.024361								0	0	0	0.37501	1	30948	30948		2.7352	0.23671	1		+		12202	15320	6845	6845	15551	15551					0.02867536539838511
GTMNLGGSLTR	11	Oxidation (M)	_GTM(Oxidation (M))NLGGSLTR_		GTM(1)NLGGSLTR		GTM(130)NLGGSLTR	0	0	1		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7821655273438	2	561.78223	1121.54991	0.42312	0.0002377	-1.1901	-0.00066859	-0.76701	-0.00043089	561.781760714147	29.837	0.70211	29.837	29.58	30.282	0					55	24	4	0	0	0	3.8481E-06	1	5373	5373		130.09	23.726	1	500110			12203	1094	6846	6846	15552	15552		134			-0.006006077564506995
GTMNLGGSLTR	11	Oxidation (M)	_GTM(Oxidation (M))NLGGSLTR_		GTM(1)NLGGSLTR		GTM(130)NLGGSLTR	0	0	1		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7821044921875	2	561.78223	1121.54991	0.40696	0.00022862	-1.1868	-0.00066675	-0.77988	-0.00043812	561.7818632384345	29.776	0.83423	29.788	29.532	30.366	0.012266					59	28	3	0	0	0	1.7397E-08	1	5356	5356		133.85	14.253	1	464960			12204	1094	6846	6846	15553	15553		134			-0.006006077564506995
GTMNLGGSLTR	11	Oxidation (M)	_GTM(Oxidation (M))NLGGSLTR_		GTM(1)NLGGSLTR		GTM(140)NLGGSLTR	0	0	1		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7821044921875	2	561.78223	1121.54991	0.0038901	2.1854E-06	-0.72751	-0.0004087	-0.72362	-0.00040652	561.7820869840542	29.814	0.78824	29.828	29.507	30.295	0.013474					54	26	3	0	0	0	1.2775E-08	1	5361	5361		139.98	24.161	1	443870			12205	1094	6846	6846	15554	15554		134			-0.006006077564506995
GTMTGMLYK	9	2 Oxidation (M)	_GTM(Oxidation (M))TGM(Oxidation (M))LYK_		GTM(1)TGM(1)LYK		GTM(160)TGM(160)LYK	0	0	2		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2396240234375	2	517.238278	1032.462	0.32014	0.00016559	-0.66828	-0.00034566	-0.34813	-0.00018007	517.2393236012782	21.953	4.3373	21.953	21.254	25.591	0					405	151	6	0	0	0	5.7257E-07	7	3040	2852;2895;2946;2954;2997;3040;3086		157.8	82.034	1	26571000			12206	7057	6847	6847	15555;15556;15557;15558;15559;15560;15561	15560		791;792			-0.05292944671418809
GTMTGMLYK	9	2 Oxidation (M)	_GTM(Oxidation (M))TGM(Oxidation (M))LYK_		GTM(1)TGM(1)LYK		GTM(160)TGM(160)LYK	0	0	2		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.239501953125	2	517.238278	1032.462	0.3062	0.00015838	-0.63011	-0.00032592	-0.32391	-0.00016754	517.23933312832	21.803	4.1903	21.702	21.16	25.35	-0.10034					416	148	6	0	0	0	5.7257E-07	8	2930	2890;2930;2971;3016;3065;3066;3113;3280		157.8	82.034	1	27967000			12207	7057	6847	6847	15562;15563;15564;15565;15566;15567;15568;15569	15563		791;792			-0.05292944671418809
GTMTGMLYK	9	2 Oxidation (M)	_GTM(Oxidation (M))TGM(Oxidation (M))LYK_		GTM(1)TGM(1)LYK		GTM(160)TGM(160)LYK	0	0	2		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2393798828125	2	517.238278	1032.462	0.16629	8.6009E-05	-0.43553	-0.00022527	-0.26925	-0.00013926	517.239429868639	21.746	3.9605	21.697	21.316	25.276	-0.049377					387	139	6	0	0	0	5.7257E-07	6	2918	2870;2918;2963;3008;3049;3094		157.8	82.034	1	28455000			12208	7057	6847	6847	15570;15571;15572;15573;15574;15575	15571		791;792			-0.05292944671418809
GTNALLVVK	9	Unmodified	_GTNALLVVK_					0	0	0		ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1	ENSG00000006712|ENST00000221265|PAF1	ENSG00000006712|ENST00000221265|PAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7870788574219	2	457.78711	913.559667	-0.17172	-7.8609E-05	0.02033	9.3068E-06	-0.15139	-6.9303E-05	457.7869534295815	39.812	0.48418	39.812	39.54	40.024	0					41	17	3	0	0	0	0.0010968	1	8439	8439		121.53	69.266	1	580070			12209	367	6848	6848	15576	15576					0.09942948311243072
GTNALLVVK	9	Unmodified	_GTNALLVVK_					0	0	0		ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1	ENSG00000006712|ENST00000221265|PAF1	ENSG00000006712|ENST00000221265|PAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7870178222656	2	457.78711	913.559667	0.20147	9.2229E-05	-0.19859	-9.0913E-05	0.0028746	1.3159E-06	457.786896193322	39.731	0.41289	39.824	39.607	40.02	0.09267					33	14	3	0	0	0	0.0010968	1	8419	8419		121.53	57.298	1	588570			12210	367	6848	6848	15577	15577					0.09942948311243072
GTNALLVVK	9	Unmodified	_GTNALLVVK_					0	0	0		ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1	ENSG00000006712|ENST00000221265|PAF1	ENSG00000006712|ENST00000221265|PAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2789001464844	2	457.78711	913.559667	0.14646	6.7046E-05	-0.22454	-0.00010279	-0.07808	-3.5744E-05	457.7868764897024	39.664	0.46771	39.763	39.481	39.949	0.099403					39	16	3	0	0	0	0.00052839	1	8367	8367		121.53	60.177	1	520830			12211	367	6848	6848	15578	15578					0.09942948311243072
GTNDGPALKK	10	Unmodified	_GTNDGPALKK_					0	0	0		nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000070961|P20020-1|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000067842|Q16720-2|ATP2B3;ENST00000551009.5_1_12:89997895-90004207:-|nuORF;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-4|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;ENSG00000067842|ENST00000263519|ATP2B3;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000157087|ENST00000360273|ATP2B2	nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000157087|Q01814-4|ATP2B2	nc|ENSG00000058668|P23634|ATP2B4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2907409667969	2	500.774731	999.534909	-0.02704	-1.3541E-05	0.65793	0.00032947	0.63089	0.00031593	500.77496422676256	13.872	0.42325	13.767	13.568	13.991	-0.10466					24	11	3	0	0	0	0.25219	1	561	561		26.268	11.43	1	96900			12212	735;5278	6849	6849	15579	15579					0.03512268437839339
GTNDGPALKK	10	Unmodified	_GTNDGPALKK_					0	0	0		nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000070961|P20020-1|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000067842|Q16720-2|ATP2B3;ENST00000551009.5_1_12:89997895-90004207:-|nuORF;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-4|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;ENSG00000067842|ENST00000263519|ATP2B3;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000157087|ENST00000360273|ATP2B2	nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000157087|Q01814-4|ATP2B2	nc|ENSG00000058668|P23634|ATP2B4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2907409667969	2	500.774731	999.534909	-0.020852	-1.0442E-05	0.76746	0.00038432	0.7466	0.00037388	500.77500370925827	13.866	0.40497	13.8	13.632	14.037	-0.066068					24	13	3	0	0	0	0.27248	1	559	559		23.79	12.149	1	133840			12213	735;5278	6849	6849	15580	15580					0.03512268437839339
GTNEFKFLKPI	11	Unmodified	_GTNEFKFLKPI_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2;nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000120327|ENST00000239449|PCDHB14;ENSG00000113205|ENST00000231130|PCDHB3;ENSG00000113212|ENST00000231137|PCDHB7	ENSG00000112852|ENST00000194155|PCDHB2;ENSG00000113205|ENST00000231130|PCDHB3;ENSG00000113212|ENST00000231137|PCDHB7	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.3621826171875	2	647.363713	1292.71287	0.042809	2.7713E-05	-3.9963	-0.0025871	-3.9535	-0.0025594	647.862207153201	103.15	0.29164	103.15	103.02	103.31	0					60	41	2	0	0	0	0.43149	1	27416	27416		7.1017	1.3699	1	4131300			12214	2464;2480;2479	6850	6850	15581	15581					0.07822518637021858
GTNFRVLLV	9	Unmodified	_GTNFRVLLV_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF;ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF;ENSG00000156510|ENST00000354624|HKDC1;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENSG00000160883|ENST00000292432|HK3	nc|ENSG00000156515|P19367-4|HK1;ENSG00000159399|ENST00000290573|HK2;ENSG00000156510|ENST00000354624|HKDC1;ENSG00000160883|ENST00000292432|HK3	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8058776855469	2	509.805834	1017.59712	0.16053	8.1841E-05	-0.13794	-7.0322E-05	0.022593	1.1518E-05	509.80584379489284	61.267	2.2528	61.267	60.495	62.747	0					222	83	5	0	0	0	0.0024096	7	15079	14985;15031;15079;15124;15176;15276;15285		106.94	58.594	1	34013000			12215	5241;5405;5240;5497	6851	6851	15582;15583;15584;15585;15586;15587;15588	15584					0.08902039576855714
GTNFRVLLV	9	Unmodified	_GTNFRVLLV_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF;ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF;ENSG00000156510|ENST00000354624|HKDC1;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENSG00000160883|ENST00000292432|HK3	nc|ENSG00000156515|P19367-4|HK1;ENSG00000159399|ENST00000290573|HK2;ENSG00000156510|ENST00000354624|HKDC1;ENSG00000160883|ENST00000292432|HK3	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8059387207031	2	509.805834	1017.59712	0.085845	4.3764E-05	-0.041939	-2.1381E-05	0.043906	2.2383E-05	509.8058423420026	61.16	2.2362	61.257	60.67	62.906	0.096985					196	81	4	0	0	0	0.001957	6	14995	14946;14995;15047;15097;15150;15260		110.55	62.533	1	34605000			12216	5241;5405;5240;5497	6851	6851	15589;15590;15591;15592;15593;15594	15590					0.08902039576855714
GTNFRVLLV	9	Unmodified	_GTNFRVLLV_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF;ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF;ENSG00000156510|ENST00000354624|HKDC1;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENSG00000160883|ENST00000292432|HK3	nc|ENSG00000156515|P19367-4|HK1;ENSG00000159399|ENST00000290573|HK2;ENSG00000156510|ENST00000354624|HKDC1;ENSG00000160883|ENST00000292432|HK3	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.80596923828125	2	509.805834	1017.59712	0.10535	5.3706E-05	0.028039	1.4294E-05	0.13338	6.8E-05	509.8058671192455	61.221	2.1573	61.211	60.918	63.075	-0.0094566					136	79	2	0	0	0	0.0013683	5	15018	14971;15018;15067;15116;15171		118.07	56.711	1	36344000			12217	5241;5405;5240;5497	6851	6851	15595;15596;15597;15598;15599	15596					0.08902039576855714
GTNFTKLEK	9	Unmodified	_GTNFTKLEK_					0	0	0		ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2848510742188	2	519.284931	1036.55531	0.18009	9.3516E-05	0.042408	2.2022E-05	0.22249	0.00011554	519.2848559272682	23.313	0.72353	23.226	23.018	23.741	-0.087608					57	25	3	0	0	0	0.0058682	1	3426	3426		85.764	47.589	1	471110			12218	2653	6852	6852	15600	15600					0.03849439097643881
GTNFTKLEK	9	Unmodified	_GTNFTKLEK_					0	0	0		ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	519.284931	1036.55531	0.19255	9.9987E-05	-0.2287	-0.00011876	-0.036149	-1.8772E-05	519.2847581028866	23.215	0.67346	23.215	22.996	23.669	0	-0.023526	-0.0001724	NaN	85.764	71	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437290			12219	2653	6852	6852							0.03849439097643881
GTNFTKLEK	9	Unmodified	_GTNFTKLEK_					0	0	0		ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	ENSG00000115514|ENST00000264255|TXNDC9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	519.284931	1036.55531	0.31703	0.00016463	-0.117	-6.0754E-05	0.20004	0.00010388	519.284734933697	23.32	0.75409	23.275	23.06	23.814	-0.044867	0.03646	-5.6394E-05	NaN	85.764	58	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	381160			12220	2653	6852	6852							0.03849439097643881
GTNGHHGLVPK	11	Unmodified	_GTNGHHGLVPK_					0	0	0		ENSG00000076641|ENST00000220597|PAG1	ENSG00000076641|ENST00000220597|PAG1	ENSG00000076641|ENST00000220597|PAG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2868041992188	2	558.799072	1115.58359	-0.090019	-5.0303E-05	0.070601	3.9452E-05	-0.019418	-1.0851E-05	558.799143486422	14.175	0.45992	14.109	13.861	14.32	-0.066068					22	15	2	0	0	0	0.43149	1	637	637		7.1017	0.89594	1	71762			12221	1066	6853	6853	15601	15601					0.03042181797604826
GTNPGIITK	9	Unmodified	_GTNPGIITK_					0	0	0		ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.76104736328125	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.775	1	24.775	24.275	25.275	0								0	0	0	1.1768E-10	1	3852	3852		143.21	50.047	1				12222	3960	6854	6854	15602	15602					0.05385784897475787
GTNPGIITK	9	Unmodified	_GTNPGIITK_					0	0	0		ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7610778808594	2	450.761092	899.507631	0.081465	3.6721E-05	-2.3256	-0.0010483	-2.2441	-0.0010116	450.76105297132744	24.835	1.2769	24.779	24.344	25.62	-0.055931					127	44	4	0	0	0	2.1937E-08	1	3880	3880		179.28	41.86	1	1363100			12223	3960	6854	6854	15603	15603					0.05385784897475787
GTNPGIITK	9	Unmodified	_GTNPGIITK_					0	0	0		ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	ENST00000474097.5_1_7:6620192-6623202:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	450.761092	899.507631	-0.095488	-4.3042E-05	-2.5102	-0.0011315	-2.6057	-0.0011746	450.76116978888115	24.775	1.1436	24.743	24.344	25.487	-0.03141	-0.017942	-8.6858E-05	NaN	179.28	125	39	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1238200			12224	3960	6854	6854							0.05385784897475787
GTNVMVTVAK	10	Oxidation (M)	_GTNVM(Oxidation (M))VTVAK_		GTNVM(1)VTVAK		GTNVM(92)VTVAK	0	0	1		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000483310.5_1_20:30136863-30150236:+|nuORF;ENST00000472128.5_1_20:30136905-30155443:+|nuORF;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;ENST00000464173.5_1_20:30136866-30137929:+|nuORF;ENST00000460389.5_1_20:30136650-30157019:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.278564453125	2	518.278792	1034.54303	0.28263	0.00014648	-0.41089	-0.00021295	-0.12826	-6.6473E-05	518.2785434478586	26.564	0.73786	26.564	26.242	26.979	0					56	25	3	0	0	0	0.028766	1	4397	4397		92.201	40.786	1	496150			12225	1681	6855	6855	15604	15604		207			0.027140793629769178
GTNVMVTVAK	10	Oxidation (M)	_GTNVM(Oxidation (M))VTVAK_		GTNVM(1)VTVAK		GTNVM(65)VTVAK	0	0	1		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000483310.5_1_20:30136863-30150236:+|nuORF;ENST00000472128.5_1_20:30136905-30155443:+|nuORF;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;ENST00000464173.5_1_20:30136866-30137929:+|nuORF;ENST00000460389.5_1_20:30136650-30157019:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2786865234375	2	518.278792	1034.54303	0.24139	0.00012511	-0.1278	-6.6235E-05	0.1136	5.8875E-05	518.2785829035552	26.549	0.76225	26.51	26.29	27.052	-0.038671					64	26	4	0	0	0	0.15218	1	4382	4382		64.927	31.482	1	605190			12226	1681	6855	6855	15605	15605		207			0.027140793629769178
GTNVMVTVAK	10	Oxidation (M)	_GTNVM(Oxidation (M))VTVAK_		GTNVM(1)VTVAK		GTNVM(67)VTVAK	0	0	1		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000483310.5_1_20:30136863-30150236:+|nuORF;ENST00000472128.5_1_20:30136905-30155443:+|nuORF;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;ENST00000464173.5_1_20:30136866-30137929:+|nuORF;ENST00000460389.5_1_20:30136650-30157019:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2786865234375	2	518.278792	1034.54303	0.44234	0.00022925	-0.56656	-0.00029364	-0.12423	-6.4383E-05	518.2784115841101	26.529	0.63206	26.507	26.236	26.869	-0.022238					55	21	3	0	0	0	0.11233	1	4386	4386		66.683	45.146	1	688060			12227	1681	6855	6855	15606	15606		207			0.027140793629769178
GTPAGGGFPR	10	Unmodified	_GTPAGGGFPR_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7357177734375	2	458.735409	915.456264	-0.10023	-4.5978E-05	0.21554	9.8875E-05	0.11531	5.2897E-05	458.73556566583295	27.377	0.94603	27.377	27.035	27.981	0					119	32	5	0	0	0	1.8225E-08	4	4617	4617;4663;4706;4756		157.8	99.116	1	4620300			12228	7546	6856	6856	15607;15608;15609;15610	15607					-0.004845390765808588
GTPAGGGFPR	10	Unmodified	_GTPAGGGFPR_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.73565673828125	2	458.735409	915.456264	-0.11549	-5.2979E-05	0.37402	0.00017157	0.25853	0.0001186	458.7356559401203	27.356	1.3012	27.335	27.015	28.316	-0.021412					151	45	5	0	0	0	1.8225E-08	4	4618	4618;4662;4709;4758		157.8	107.86	1	5028200			12229	7546	6856	6856	15611;15612;15613;15614	15611					-0.004845390765808588
GTPAGGGFPR	10	Unmodified	_GTPAGGGFPR_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7356872558594	2	458.735409	915.456264	-0.04157	-1.907E-05	0.34656	0.00015898	0.30499	0.00013991	458.7356328140196	27.361	1.2976	27.35	26.984	28.282	-0.01156					145	45	5	0	0	0	1.8225E-08	4	4618	4618;4663;4708;4751		157.8	107.86	1	5095200			12230	7546	6856	6856	15615;15616;15617;15618	15615					-0.004845390765808588
GTPETSFNK	9	Unmodified	_GTPETSFNK_					0	0	0		nc|ENSG00000093144|Q9NTX5-4|ECHDC1;nc|ENSG00000093144|Q9NTX5-5|ECHDC1	nc|ENSG00000093144|Q9NTX5-4|ECHDC1	nc|ENSG00000093144|Q9NTX5-4|ECHDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7378234863281	2	490.737814	979.461075	0.15124	7.4218E-05	0.15027	7.3745E-05	0.30151	0.00014796	490.73782648832054	22.622	0.87761	22.577	22.182	23.06	-0.044867					80	30	3	0	0	0	0.21447	1	3220	3220		21.537	5.6898	1	332910			12231	12605	6857	6857	15619	15619					-0.02947699724472841
GTPKFGYKV	9	Unmodified	_GTPKFGYKV_					0	0	0		ENSG00000121904|ENST00000373381|CSMD2;nc|ENSG00000121904|Q7Z408|CSMD2;nc|ENSG00000121904|Q7Z408-2|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2397155761719	2	498.779285	995.544017	0.2663	0.00013283	-1.1942	-0.00059563	-0.92787	-0.0004628	498.7793246156921	16.303	0.31936	16.24	16.094	16.414	-0.062534					16	10	3	0	0	0	0.25779	1	1316	1316		6.2058	0	1	31710			12232	3020	6858	6858	15620	15620					0.046066617941846744
GTPLETIQK	9	Unmodified	_GTPLETIQK_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7795715332031	2	493.779482	985.544411	0.33318	0.00016452	0.54124	0.00026725	0.87442	0.00043177	493.77947902989456	33.042	1.061	33.042	32.556	33.617	0					100	37	4	0	0	0	0.13296	1	6314	6314		33.445	13.03	1	1034000			12233	2856	6859	6859	15621	15621					0.051060367233731085
GTPLETIQK	9	Unmodified	_GTPLETIQK_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7796325683594	2	493.779482	985.544411	0.38947	0.00019231	0.33581	0.00016582	0.72528	0.00035813	493.77940844467645	32.911	1.0787	32.966	32.421	33.499	0.055313					102	38	4	0	0	0	0.069258	1	6283	6283		45.74	18.111	1	1207500			12234	2856	6859	6859	15622	15622					0.051060367233731085
GTPLETIQK	9	Unmodified	_GTPLETIQK_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.77947998046875	2	493.779482	985.544411	0.31854	0.00015729	0.51373	0.00025367	0.83227	0.00041096	493.77944928879657	32.904	1.2578	32.958	32.441	33.699	0.054371					111	45	4	0	0	0	0.069258	2	6277	6277;6284		45.74	21.719	1	1096300			12235	2856	6859	6859	15623;15624	15623					0.051060367233731085
GTPLETIQKK	10	Unmodified	_GTPLETIQKK_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.826904296875	2	557.826963	1113.63937	0.13696	7.6401E-05	-0.28186	-0.00015723	-0.1449	-8.0829E-05	557.8267583079371	26.111	0.76793	26.072	25.721	26.489	-0.03867					59	26	4	0	0	0	0.32877	1	4208	4208		16.566	8.1216	1	432540			12236	2856	6860	6860	15625	15625					0.08709970194558991
GTPLETIQKK	10	Unmodified	_GTPLETIQKK_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2937622070312	2	557.826963	1113.63937	0.19814	0.00011053	-0.31444	-0.0001754	-0.1163	-6.4876E-05	557.8267406375087	26.086	0.60739	26.063	25.774	26.381	-0.022236					55	21	3	0	0	0	0.32033	1	4179	4179		4.1895	0.60244	1	397890			12237	2856	6860	6860	15626	15626					0.08709970194558991
GTPLLPPL	8	Unmodified	_GTPLLPPL_					0	0	0			REV__ENST00000301634.11_1_17:76170450-76170858:-|nuORF	REV__ENST00000301634.11_1_17:76170450-76170858:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.25238037109375	2	404.252372	806.49019	-0.012649	-5.1133E-06	0.37967	0.00015348	0.36703	0.00014837	404.25238676919616	72.222	0.91779	72.222	71.937	72.855	0					54	33	2	0	0	0	0.12267	1	18399	18399		56.541	0	1	609250	+		12238	19825	6861	6861	15627	15627					0.07920489362459193
GTPLLPPL	8	Unmodified	_GTPLLPPL_					0	0	0			REV__ENST00000301634.11_1_17:76170450-76170858:-|nuORF	REV__ENST00000301634.11_1_17:76170450-76170858:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	404.252372	806.49019	-0.0046476	-1.8788E-06	0.29207	0.00011807	0.28742	0.00011619	404.2523723072077	72.154	0.84581	72.211	71.922	72.767	0.056572	0.0014983	-1.1244E-05	NaN	56.541	49	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	644580	+		12239	19825	6861	6861							0.07920489362459193
GTPLLVIANK	10	Unmodified	_GTPLLVIANK_					0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2869873046875	2	513.321317	1024.62808	0.4571	0.00023464	-0.25599	-0.00013141	0.20111	0.00010323	513.3212568796383	48.657	0.55821	48.657	48.298	48.856	0					41	19	3	0	0	0	0.067799	1	11150	11150		79.596	48.96	1	597450			12240	7728	6862	6862	15628	15628					0.11675192891084407
GTPLLVIANK	10	Unmodified	_GTPLLVIANK_					0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.286865234375	2	513.321317	1024.62808	0.52832	0.0002712	0.041253	2.1176E-05	0.56957	0.00029237	513.3214203239617	48.666	0.54263	48.711	48.363	48.906	0.044891					36	19	2	0	0	0	0.097973	1	11151	11151		72.968	42.331	1	633350			12241	7728	6862	6862	15629	15629					0.11675192891084407
GTPLLVIANK	10	Unmodified	_GTPLLVIANK_					0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2869262695312	2	513.321317	1024.62808	0.29678	0.00015234	0.037166	1.9078E-05	0.33395	0.00017142	513.3213807027204	48.567	0.64569	48.599	48.309	48.954	0.032043					39	23	2	0	0	0	0.081544	1	11119	11119		75.761	51.74	1	574590			12242	7728	6862	6862	15630	15630					0.11675192891084407
GTPVRHPPEWG	11	Unmodified	_GTPVRHPPEWG_					0	0	0			REV__THE1B-int_dup1888|chr6:111282961-111284170:-|1.7370166059662973|0.0871552847339515|4.32|531.0|21|2|sense	REV__THE1B-int_dup1888|chr6:111282961-111284170:-|1.7370166059662973|0.0871552847339515|4.32|531.0|21|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.890869140625	3	411.543878	1231.60981	-0.37643	-0.00015492	0.96033	0.00039522	0.5839	0.0002403	411.8783326544494	13.531	0.43143	13.531	13.282	13.714	0					17	14	2	0	0	0	0.46392	1	428	428		2.8433	0	1	48274	+		12243	23324	6863	6863	15631	15631					0.003264509690552586
GTQLTPAK	8	Unmodified	_GTQLTPAK_					0	0	0			REV__ENST00000443024.6_1_9:95015690-95019057:-|nuORF	REV__ENST00000443024.6_1_9:95015690-95019057:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.2348937988281	2	408.23471	814.454868	-0.27613	-0.00011273	0.78229	0.00031936	0.50616	0.00020663	408.23493202951863	14.97	0.54673	14.906	14.7	15.247	-0.064414					46	18	4	0	0	0	0.33441	1	895	895		26.884	0	1	420880	+		12244	21061	6864	6864	15632	15632					0.04021826834662079
GTQLTPAK	8	Unmodified	_GTQLTPAK_					0	0	0			REV__ENST00000443024.6_1_9:95015690-95019057:-|nuORF	REV__ENST00000443024.6_1_9:95015690-95019057:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	408.23471	814.454868	-0.21378	-8.7273E-05	0.7394	0.00030185	0.52562	0.00021457	408.23490261673925	14.945	0.47461	14.836	14.646	15.121	-0.10981	-0.03799	-3.8541E-05	NaN	26.884	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	496310	+		12245	21061	6864	6864							0.04021826834662079
GTQLTPAK	8	Unmodified	_GTQLTPAK_					0	0	0			REV__ENST00000443024.6_1_9:95015690-95019057:-|nuORF	REV__ENST00000443024.6_1_9:95015690-95019057:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	408.23471	814.454868	-0.27613	-0.00011273	0.78229	0.00031936	0.50616	0.00020663	408.23493202951863	14.97	0.54673	14.906	14.7	15.247	-0.064414	0.032339	-3.5156E-06	NaN	26.884	46	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420880	+		12246	21061	6864	6864							0.04021826834662079
GTQNQLRCELS	11	Unmodified	_GTQNQLRCELS_					0	0	0		ZFR|p.C387S|1|0.21|ENSG00000056097|chr5:32403971-32403971|A/T|missense_variant	ZFR|p.C387S|1|0.21|ENSG00000056097|chr5:32403971-32403971|A/T|missense_variant	ZFR|p.C387S|1|0.21|ENSG00000056097|chr5:32403971-32403971|A/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.803955078125	2	624.803694	1247.59283	-0.14089	-8.8026E-05	0.076095	4.7544E-05	-0.064791	-4.0482E-05	624.8038209854046	18.814	0.76151	18.696	18.414	19.175	-0.11739					63	26	4	0	0	0	0.45108	1	2116	2116		4.5289	1.7937	1	326430			12247	23415	6865	6865	15633	15633					-0.021058376990367833
GTQPGPLLK	9	Unmodified	_GTQPGPLLK_					0	0	0		nc|ENSG00000123243|Q86UX2-4|ITIH5;ENST00000476417.5_1_10:7615057-7659255:-|nuORF;nc|ENSG00000123243|Q86UX2-3|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5;ENST00000492668.5_1_10:7611547-7618533:-|nuORF;nc|ENSG00000123243|Q86UX2-2|ITIH5	nc|ENSG00000123243|Q86UX2-4|ITIH5;nc|ENSG00000123243|Q86UX2-2|ITIH5	nc|ENSG00000123243|Q86UX2-2|ITIH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.77154541015625	2	455.77146	909.528367	0.30012	0.00013679	-0.24385	-0.00011114	0.056275	2.5649E-05	455.77117869575835	29.538	1.0648	29.538	29.218	30.282	0					81	37	3	0	0	0	0.010888	2	5272	5272;5320		78.06	34.205	1	1161000			12248	10945;12682	6866	6866	15634;15635	15634					0.06998375277134983
GTQPGPLLK	9	Unmodified	_GTQPGPLLK_					0	0	0		nc|ENSG00000123243|Q86UX2-4|ITIH5;ENST00000476417.5_1_10:7615057-7659255:-|nuORF;nc|ENSG00000123243|Q86UX2-3|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5;ENST00000492668.5_1_10:7611547-7618533:-|nuORF;nc|ENSG00000123243|Q86UX2-2|ITIH5	nc|ENSG00000123243|Q86UX2-4|ITIH5;nc|ENSG00000123243|Q86UX2-2|ITIH5	nc|ENSG00000123243|Q86UX2-2|ITIH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.7717590332031	2	455.77146	909.528367	0.19995	9.113E-05	-0.079916	-3.6423E-05	0.12003	5.4706E-05	455.77128453520214	29.538	1.0121	29.551	29.218	30.23	0.012266					77	34	3	0	0	0	0.0098873	3	5258	5258;5307;5357		79.596	35.738	1	1037100			12249	10945;12682	6866	6866	15636;15637;15638	15636					0.06998375277134983
GTQPGPLLK	9	Unmodified	_GTQPGPLLK_					0	0	0		nc|ENSG00000123243|Q86UX2-4|ITIH5;ENST00000476417.5_1_10:7615057-7659255:-|nuORF;nc|ENSG00000123243|Q86UX2-3|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5;ENST00000492668.5_1_10:7611547-7618533:-|nuORF;nc|ENSG00000123243|Q86UX2-2|ITIH5	nc|ENSG00000123243|Q86UX2-4|ITIH5;nc|ENSG00000123243|Q86UX2-2|ITIH5	nc|ENSG00000123243|Q86UX2-2|ITIH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.77142333984375	2	455.77146	909.528367	-0.059264	-2.7011E-05	0.16788	7.6517E-05	0.10862	4.9506E-05	455.7713802522261	29.521	1.0473	29.535	29.22	30.267	0.013474					82	35	3	0	0	0	0.015924	2	5310	5264;5310		70.332	34.205	1	988470			12250	10945;12682	6866	6866	15639;15640	15640					0.06998375277134983
GTQPWFISK	9	Unmodified	_GTQPWFISK_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.L1152Sfs*20|1|0.31|ENSG00000065534|chr3:123692847-123692847|T/-|frameshift_variant;nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.282470703125	2	532.282192	1062.54983	0.51123	0.00027212	-0.32814	-0.00017467	0.18309	9.7455E-05	532.2820996518175	49.833	0.75696	49.833	49.434	50.191	0					44	27	2	0	0	0	0.13039	1	11478	11478		33.821	16.379	1	526200			12251	819	6867	6867	15641	15641					0.02105760305835247
GTQPWFISK	9	Unmodified	_GTQPWFISK_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.L1152Sfs*20|1|0.31|ENSG00000065534|chr3:123692847-123692847|T/-|frameshift_variant;nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	532.282192	1062.54983	0.41414	0.00022044	-0.16491	-8.778E-05	0.24923	0.00013266	532.282289380533	49.75	0.61865	49.795	49.489	50.108	0.044891	-0.018777	0.00014274	NaN	33.821	43	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614220			12252	819	6867	6867							0.02105760305835247
GTQPWFISK	9	Unmodified	_GTQPWFISK_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.L1152Sfs*20|1|0.31|ENSG00000065534|chr3:123692847-123692847|T/-|frameshift_variant;nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	532.282192	1062.54983	0.5231	0.00027844	-0.3736	-0.00019886	0.1495	7.9574E-05	532.2820316179211	49.792	0.72266	49.812	49.429	50.152	0.020691	-0.001011	-7.9422E-05	NaN	33.821	36	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	520060			12253	819	6867	6867							0.02105760305835247
GTQSDKVTLK	10	Unmodified	_GTQSDKVTLK_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF;ENST00000483086.1_1_2:242174984-242179130:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8005981445312	2	538.800946	1075.58734	0.28626	0.00015424	-0.44785	-0.0002413	-0.16159	-8.7065E-05	538.8007183131798	15.87	0.7226	15.87	15.654	16.377	0					50	25	3	0	0	0	0.40532	1	1209	1209		2.4985	0	1	242280			12254	2669	6868	6868	15642	15642					0.05256806780789702
GTQSDKVTLK	10	Unmodified	_GTQSDKVTLK_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF;ENST00000483086.1_1_2:242174984-242179130:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.80078125	2	538.800946	1075.58734	0.21981	0.00011844	-0.26482	-0.00014268	-0.045003	-2.4248E-05	538.8007697643245	15.992	0.64028	15.878	15.635	16.275	-0.11434					48	21	3	0	0	0	0.12389	1	1183	1183		42.835	26.686	1	273770			12255	2669	6868	6868	15643	15643					0.05256806780789702
GTQSDKVTLK	10	Unmodified	_GTQSDKVTLK_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF;ENST00000483086.1_1_2:242174984-242179130:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8009033203125	2	538.800946	1075.58734	0.35191	0.00018961	-0.57143	-0.00030789	-0.21952	-0.00011828	538.8006915736562	15.957	0.68078	15.894	15.67	16.351	-0.062533					56	23	4	0	0	0	0.29148	1	1171	1171		27.088	18.933	1	282710			12256	2669	6868	6868	15644	15644					0.05256806780789702
GTQSFVFQR	9	Unmodified	_GTQSFVFQR_					0	0	0		ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1;ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.2752075195312	2	535.274898	1068.53524	0.60494	0.00032381	0.088016	4.7113E-05	0.69295	0.00037092	535.2749652729434	40.63	0.73497	40.63	40.334	41.069	0					48	26	2	0	0	0	0.0013924	1	8676	8676		117.76	53.8	1	739420			12257	4789	6869	6869	15645	15645					0.0037168815772474773
GTQSFVFQR	9	Unmodified	_GTQSFVFQR_					0	0	0		ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1;ENST00000378892.5_1_9:34637493-34637721:-|nuORF;nc|ENSG00000147955|Q99720-4|SIGMAR1	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.2752685546875	2	535.274898	1068.53524	0.5251	0.00028107	0.090629	4.8511E-05	0.61572	0.00032958	535.2749420282662	40.357	0.67836	40.45	40.2	40.879	0.09267					41	24	2	0	0	0	5.4053E-05	1	8600	8600		148.27	79.163	1	975390			12258	4789	6869	6869	15646	15646					0.0037168815772474773
GTQSKAFYK	9	Unmodified	_GTQSKAFYK_					0	0	0		ENST00000421621.2_1_7:44250594-44251878:+|nuORF;ENST00000424864.1_3_7:44250473-44251164:+|nuORF;ENST00000447123.5_1_7:44240734-44251164:+|nuORF;ENSG00000106636|ENST00000223369|YKT6	ENST00000421621.2_1_7:44250594-44251878:+|nuORF	ENST00000421621.2_1_7:44250594-44251878:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2716674804688	2	515.271824	1028.5291	0.095816	4.9371E-05	-0.35046	-0.00018058	-0.25465	-0.00013121	515.2717107064747	15.623	0.86549	15.623	15.257	16.123	0					54	29	4	0	0	0	0.07944	2	1105	1062;1105		41.956	26.108	1	224330			12259	2091	6870	6870	15647;15648	15648					0.015971699261854155
GTQSKAFYK	9	Unmodified	_GTQSKAFYK_					0	0	0		ENST00000421621.2_1_7:44250594-44251878:+|nuORF;ENST00000424864.1_3_7:44250473-44251164:+|nuORF;ENST00000447123.5_1_7:44240734-44251164:+|nuORF;ENSG00000106636|ENST00000223369|YKT6	ENST00000421621.2_1_7:44250594-44251878:+|nuORF	ENST00000421621.2_1_7:44250594-44251878:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2715454101562	2	515.271824	1028.5291	0.03938	2.0291E-05	-0.34492	-0.00017773	-0.30554	-0.00015744	515.2717485619363	15.734	0.67145	15.625	15.38	16.051	-0.10981					48	22	4	0	0	0	0.086462	1	1098	1098		40.239	28.599	1	218500			12260	2091	6870	6870	15649	15649					0.015971699261854155
GTQSKAFYK	9	Unmodified	_GTQSKAFYK_					0	0	0		ENST00000421621.2_1_7:44250594-44251878:+|nuORF;ENST00000424864.1_3_7:44250473-44251164:+|nuORF;ENST00000447123.5_1_7:44240734-44251164:+|nuORF;ENSG00000106636|ENST00000223369|YKT6	ENST00000421621.2_1_7:44250594-44251878:+|nuORF	ENST00000421621.2_1_7:44250594-44251878:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2716674804688	2	515.271824	1028.5291	-0.022288	-1.1484E-05	-0.21749	-0.00011207	-0.23978	-0.00012355	515.2717733698335	15.66	0.67305	15.596	15.391	16.064	-0.064413					41	22	3	0	0	0	0.053988	1	1087	1087		51.415	38.373	1	254340			12261	2091	6870	6870	15650	15650					0.015971699261854155
GTQTVFPSK	9	Unmodified	_GTQTVFPSK_					0	0	0		nc|ENSG00000156463|Q8TEC5-3|SH3RF2;nc|ENSG00000156463|Q8TEC5-2|SH3RF2;ENST00000511705.1_1_5:145435703-145442261:+|nuORF;ENSG00000156463|ENST00000359120|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7879943847656	2	482.758549	963.502546	-0.1047	-5.0544E-05	0.10857	5.2414E-05	0.0038745	1.8705E-06	482.75835573931647	27.68	1.0465	27.68	27.502	28.548	0					66	36	3	0	0	0	0.1269	1	4707	4707		37.771	18.409	1	345290			12262	5235	6871	6871	15651	15651					0.019334810348595965
GTQTVFPSK	9	Unmodified	_GTQTVFPSK_					0	0	0		nc|ENSG00000156463|Q8TEC5-3|SH3RF2;nc|ENSG00000156463|Q8TEC5-2|SH3RF2;ENST00000511705.1_1_5:145435703-145442261:+|nuORF;ENSG00000156463|ENST00000359120|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7878723144531	2	482.758549	963.502546	-0.075456	-3.6427E-05	-0.10415	-5.0277E-05	-0.1796	-8.6704E-05	482.75829576939685	27.741	0.93075	27.719	27.437	28.368	-0.021412					60	32	2	0	0	0	0.066921	1	4754	4754		70.929	28.973	1	418440			12263	5235	6871	6871	15652	15652					0.019334810348595965
GTQTVFPSK	9	Unmodified	_GTQTVFPSK_					0	0	0		nc|ENSG00000156463|Q8TEC5-3|SH3RF2;nc|ENSG00000156463|Q8TEC5-2|SH3RF2;ENST00000511705.1_1_5:145435703-145442261:+|nuORF;ENSG00000156463|ENST00000359120|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	nc|ENSG00000156463|Q8TEC5-3|SH3RF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.787841796875	2	482.758549	963.502546	-0.071012	-3.4282E-05	-2.4055	-0.0011613	-2.4765	-0.0011956	482.75831449726735	27.588	1.2727	27.577	27.266	28.538	-0.01156					84	44	3	0	0	0	0.021777	1	4745	4745		88.364	42.624	1	452210			12264	5235	6871	6871	15653	15653					0.019334810348595965
GTRWWEWLT	9	Unmodified	_GTRWWEWLT_					0	0	0			REV__ENST00000524189.5_1_8:28925998-28926520:-|nuORF	REV__ENST00000524189.5_1_8:28925998-28926520:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.529052734375	3	412.204974	1233.59309	0.074784	3.0827E-05	-1.8453	-0.00076063	-1.7705	-0.0007298	412.5378086226738	19.331	0.30729	19.215	18.977	19.284	-0.11592					15	10	2	0	0	0	0.2615	1	2142	2142		2.4985	0	1	18447	+		12265	21936	6872	6872	15654	15654					-0.01436049916878801
GTSDRFSRILK	11	Unmodified	_GTSDRFSRILK_					0	0	0		ENST00000534785.1_1_11:65061654-65063444:+|nuORF;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENSG00000014138|ENST00000265465|POLA2	ENST00000534785.1_1_11:65061654-65063444:+|nuORF	ENST00000534785.1_1_11:65061654-65063444:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.24176025390625	3	427.242088	1278.70443	0.0023772	1.0156E-06	-0.91044	-0.00038898	-0.90807	-0.00038796	427.2417117781041	30.339	0.85934	30.339	30.088	30.948	0					82	30	4	0	0	0	0.13318	1	5543	5543		66.617	39.488	1	929970			12266	472	6873	6873	15655	15655					0.07622964720417258
GTSDRFSRILK	11	Unmodified	_GTSDRFSRILK_					0	0	0		ENST00000534785.1_1_11:65061654-65063444:+|nuORF;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENSG00000014138|ENST00000265465|POLA2	ENST00000534785.1_1_11:65061654-65063444:+|nuORF	ENST00000534785.1_1_11:65061654-65063444:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.2416687011719	3	427.242088	1278.70443	-0.0090182	-3.853E-06	-0.99412	-0.00042473	-1.0031	-0.00042858	427.24162963762393	30.323	0.7062	30.351	30.103	30.81	0.027946					74	24	4	0	0	0	0.24361	1	5597	5597		27.289	15.062	1	809350			12267	472	6873	6873	15656	15656					0.07622964720417258
GTSDRFSRILK	11	Unmodified	_GTSDRFSRILK_					0	0	0		ENST00000534785.1_1_11:65061654-65063444:+|nuORF;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENSG00000014138|ENST00000265465|POLA2	ENST00000534785.1_1_11:65061654-65063444:+|nuORF	ENST00000534785.1_1_11:65061654-65063444:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.2417907714844	3	427.242088	1278.70443	-0.32699	-0.0001397	-0.63562	-0.00027156	-0.9626	-0.00041127	427.2417467312728	30.364	0.86227	30.391	30.083	30.945	0.027157					75	30	4	0	0	0	0.39571	1	5595	5595		11.798	2.0341	1	874530			12268	472	6873	6873	15657	15657					0.07622964720417258
GTSEFITGK	9	Unmodified	_GTSEFITGK_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2428894042969	2	470.242732	938.470912	0.22599	0.00010627	0.2708	0.00012734	0.49679	0.00023361	470.24266865267134	29.117	0.62018	29.117	28.845	29.465	0					52	22	3	0	0	0	0.0054984	2	5149	5149;5197		86.332	65.878	1	596520			12269	2287	6874	6874	15658;15659	15658					-0.0007851171908441756
GTSEFITGK	9	Unmodified	_GTSEFITGK_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2427673339844	2	470.242732	938.470912	0.14525	6.8305E-05	0.24582	0.0001156	0.39108	0.0001839	470.2427341553731	29.072	0.58543	29.084	28.858	29.443	0.012264					52	20	3	0	0	0	0.0073901	2	5140	5140;5189		83.429	55.8	1	597010			12270	2287	6874	6874	15660;15661	15660					-0.0007851171908441756
GTSEFITGK	9	Unmodified	_GTSEFITGK_					0	0	0		ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	ENSG00000110002|ENST00000456829|VWA5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2428283691406	2	470.242732	938.470912	0.082786	3.8929E-05	0.33709	0.00015851	0.41988	0.00019744	470.24274197480764	29.116	0.68336	29.129	28.853	29.536	0.013475					60	24	3	0	0	0	0.013404	2	5141	5141;5190		74.2	54.943	1	617160			12271	2287	6874	6874	15662;15663	15662					-0.0007851171908441756
GTSELLLAK	9	Unmodified	_GTSELLLAK_					0	0	0		nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1	nc|ENSG00000151693|O43150-2|ASAP2;nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000151693|O43150-2|ASAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7977600097656	2	466.276575	930.538597	-0.25773	-0.00012017	-0.2903	-0.00013536	-0.54804	-0.00025554	466.276385221889	38.581	0.57839	38.581	38.295	38.873	0					41	20	3	0	0	0	0.075356	1	8048	8048		63.961	16.212	1	443110			12272	4977;5074	6875	6875	15664	15664					0.07054938211717854
GTSELLLAK	9	Unmodified	_GTSELLLAK_					0	0	0		nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1	nc|ENSG00000151693|O43150-2|ASAP2;nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000151693|O43150-2|ASAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7978210449219	2	466.276575	930.538597	0.084328	3.932E-05	-0.58797	-0.00027416	-0.50364	-0.00023484	466.27618205391764	38.464	0.48791	38.555	38.347	38.834	0.090881					29	17	2	0	0	0	0.099099	1	8033	8033		55.503	15.553	1	479360			12273	4977;5074	6875	6875	15665	15665					0.07054938211717854
GTSELLLAK	9	Unmodified	_GTSELLLAK_					0	0	0		nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1	nc|ENSG00000151693|O43150-2|ASAP2;nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000151693|O43150-2|ASAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7976989746094	2	466.276575	930.538597	0.26877	0.00012532	-0.59553	-0.00027768	-0.32677	-0.00015236	466.2762479897365	38.495	0.62671	38.592	38.294	38.921	0.097527					44	22	3	0	0	0	0.026033	1	8007	8007		72.968	16.791	1	384830			12274	4977;5074	6875	6875	15666	15666					0.07054938211717854
GTSFRFCSR	9	Unmodified	_GTSFRFCSR_					0	0	0			REV__ENSG00000102385|ENST00000395209|DRP2	REV__ENSG00000102385|ENST00000395209|DRP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7532348632812	2	530.753276	1059.492	0.1855	9.8457E-05	0.32238	0.00017111	0.50789	0.00026956	530.7532048728164	16.888	0.70657	16.774	16.476	17.183	-0.11434					54	25	3	0	0	0	0.28674	1	1466	1466		10.824	2.2306	1	304830	+		12275	14320	6876	6876	15667	15667					-0.035368248912163835
GTSFRFCSR	9	Unmodified	_GTSFRFCSR_					0	0	0			REV__ENSG00000102385|ENST00000395209|DRP2	REV__ENSG00000102385|ENST00000395209|DRP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7535400390625	2	530.753276	1059.492	0.51276	0.00027215	-0.022326	-1.185E-05	0.49043	0.0002603	530.7531057427952	16.837	0.6511	16.775	16.558	17.209	-0.062534					51	23	3	0	0	0	0.28674	1	1433	1433		10.824	4.1008	1	274690	+		12276	14320	6876	6876	15668	15668					-0.035368248912163835
GTSGLILKR	9	Unmodified	_GTSGLILKR_					0	0	0		ENSG00000137825|ENST00000260386|ITPKA	ENSG00000137825|ENST00000260386|ITPKA	ENSG00000137825|ENST00000260386|ITPKA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7979736328125	2	472.798009	943.581465	-0.0063244	-2.9902E-06	0.077063	3.6435E-05	0.070738	3.3445E-05	472.7979482816808	25.394	0.5301	25.394	25.153	25.683	0					48	17	4	0	0	0	0.011693	1	4071	4071		76.825	10.368	1	687170			12277	4084	6877	6877	15669	15669					0.10741753059812709
GTSGLILKR	9	Unmodified	_GTSGLILKR_					0	0	0		ENSG00000137825|ENST00000260386|ITPKA	ENSG00000137825|ENST00000260386|ITPKA	ENSG00000137825|ENST00000260386|ITPKA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7979431152344	2	472.798009	943.581465	-0.067729	-3.2022E-05	0.19342	9.1446E-05	0.12569	5.9424E-05	472.7979815337433	25.436	0.54352	25.38	25.134	25.677	-0.055931					48	18	4	0	0	0	0.0054984	1	4042	4042		86.332	10.571	1	643420			12278	4084	6877	6877	15670	15670					0.10741753059812709
GTSGLILKR	9	Unmodified	_GTSGLILKR_					0	0	0		ENSG00000137825|ENST00000260386|ITPKA	ENSG00000137825|ENST00000260386|ITPKA	ENSG00000137825|ENST00000260386|ITPKA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7978820800781	2	472.798009	943.581465	-0.11329	-5.3561E-05	0.12616	5.965E-05	0.012877	6.0883E-06	472.79798640913504	25.469	0.55726	25.438	25.181	25.738	-0.03141					53	19	4	0	0	0	0.074552	1	4032	4032		43.772	3.8151	1	673750			12279	4084	6877	6877	15671	15671					0.10741753059812709
GTSGSSNSKI	10	Unmodified	_GTSGSSNSKI_					0	0	0			REV__nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	REV__nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.24053955078125	2	469.232896	936.451239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.454	1	22.454	21.954	22.954	0								0	0	0	0.36711	1	3150	3150		7.609	1.4032	1		+		12280	16540	6878	6878	15672	15672					-0.01952887729851227
GTSITVPQK	9	Unmodified	_GTSITVPQK_					0	0	0		nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF;ENSG00000134851|ENST00000381334|TMEM165;TMEM165|p.F237Lfs*7|1|0.24|ENSG00000134851|chr4:55417900-55417900|T/-|frameshift_variant	nc|ENSG00000134851|Q9HC07-2|TMEM165	nc|ENSG00000134851|Q9HC07-2|TMEM165	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.76593017578125	2	465.766374	929.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.127	1	27.127	26.627	27.627	0								0	0	0	0.094536	1	4562	4562		47.594	9.4188	1				12281	3819	6879	6879	15673	15673					0.05061767551910634
GTSITVPQK	9	Unmodified	_GTSITVPQK_					0	0	0		nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF;ENSG00000134851|ENST00000381334|TMEM165;TMEM165|p.F237Lfs*7|1|0.24|ENSG00000134851|chr4:55417900-55417900|T/-|frameshift_variant	nc|ENSG00000134851|Q9HC07-2|TMEM165	nc|ENSG00000134851|Q9HC07-2|TMEM165	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7660827636719	2	465.766374	929.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.128	1	27.107	26.607	27.607	-0.021412								0	0	0	0.067964	1	4565	4565		55.503	17.327	1				12282	3819	6879	6879	15674	15674					0.05061767551910634
GTSKAGNPIFY	11	Unmodified	_GTSKAGNPIFY_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.2928466796875	2	577.795663	1153.57677	0.12706	7.3417E-05	0.94129	0.00054387	1.0684	0.00061729	577.7957832250233	61.671	0.83109	61.671	61.461	62.292	0					59	30	3	0	0	0	0.32231	1	15277	15277		6.6304	0	1	581320			12283	7899	6880	6880	15675	15675					0.006128241263922973
GTSPSSKYVK	10	Unmodified	_GTSPSSKYVK_					0	0	0		nc|ENSG00000110906|Q9H3F6-2|KCTD10;ENSG00000110906|ENST00000228495|KCTD10;ENST00000538377.1_1_12:109907257-109915067:-|nuORF;ENST00000535747.5_1_12:109898344-109915067:-|nuORF	nc|ENSG00000110906|Q9H3F6-2|KCTD10	nc|ENSG00000110906|Q9H3F6-2|KCTD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2826538085938	2	527.282389	1052.55022	0.21293	0.00011228	-0.14737	-7.7707E-05	0.065561	3.4569E-05	527.28226612836	15	0.47334	15	14.759	15.232	0					33	16	3	0	0	0	0.34053	1	874	874		14.405	4.2548	1	158270			12284	2336	6881	6881	15676	15676					0.026051352350577872
GTSPSSKYVK	10	Unmodified	_GTSPSSKYVK_					0	0	0		nc|ENSG00000110906|Q9H3F6-2|KCTD10;ENSG00000110906|ENST00000228495|KCTD10;ENST00000538377.1_1_12:109907257-109915067:-|nuORF;ENST00000535747.5_1_12:109898344-109915067:-|nuORF	nc|ENSG00000110906|Q9H3F6-2|KCTD10	nc|ENSG00000110906|Q9H3F6-2|KCTD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7838134765625	2	527.282389	1052.55022	0.22126	0.00011667	-0.31258	-0.00016482	-0.091317	-4.815E-05	527.2822145044142	15.12	0.46759	15.01	14.818	15.285	-0.10981					38	16	3	0	0	0	0.29144	1	927	927		26.021	12.978	1	174450			12285	2336	6881	6881	15677	15677					0.026051352350577872
GTSPSSKYVK	10	Unmodified	_GTSPSSKYVK_					0	0	0		nc|ENSG00000110906|Q9H3F6-2|KCTD10;ENSG00000110906|ENST00000228495|KCTD10;ENST00000538377.1_1_12:109907257-109915067:-|nuORF;ENST00000535747.5_1_12:109898344-109915067:-|nuORF	nc|ENSG00000110906|Q9H3F6-2|KCTD10	nc|ENSG00000110906|Q9H3F6-2|KCTD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.281982421875	2	527.282389	1052.55022	0.20374	0.00010743	-0.21996	-0.00011598	-0.016225	-8.5551E-06	527.2821531287693	15.153	0.48856	15.088	14.871	15.36	-0.064413					33	16	4	0	0	0	0.31696	1	943	943		10.151	5.3946	1	164550			12286	2336	6881	6881	15678	15678					0.026051352350577872
GTSPTAETILK	11	Unmodified	_GTSPTAETILK_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.3088989257812	2	559.308603	1116.60265	0.5963	0.00033352	4.2403	0.0023716	4.8366	0.0027052	559.3095192600341	37.062	0.99759	37.062	36.59	37.587	0					97	35	4	0	0	0	0.24585	1	7653	7653		27.088	10.522	1	743290			12287	3143	6882	6882	15679	15679					0.04901673578001464
GTSRAKKR	8	Unmodified	_GTSRAKKR_					0	0	0			REV__ENST00000603885.5_1_3:46966981-47017871:-|nuORF	REV__ENST00000603885.5_1_3:46966981-47017871:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2776794433594	2	452.277775	902.540997	0.12406	5.6107E-05	0.042228	1.9099E-05	0.16628	7.5206E-05	452.2776874844455	69.497	1.8371	69.497	68.436	70.273	0					149	66	3	0	0	0	0.45544	1	17757	17757		3.9444	3.9444	1	931270	+		12288	22651	6883	6883	15680	15680					0.08582831460034868
GTSRAKKR	8	Unmodified	_GTSRAKKR_					0	0	0			REV__ENST00000603885.5_1_3:46966981-47017871:-|nuORF	REV__ENST00000603885.5_1_3:46966981-47017871:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	452.277775	902.540997	0.12406	5.6107E-05	0.042228	1.9099E-05	0.16628	7.5206E-05	452.2776874844455	69.497	1.8371	69.497	68.436	70.273	0	0	0	NaN	3.9444	149	66	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	931270	+		12289	22651	6883	6883							0.08582831460034868
GTSSAASSPLK	11	Unmodified	_GTSSAASSPLK_					0	0	0		ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.2643127441406	2	503.264196	1004.51384	0.11997	6.0376E-05	-0.99062	-0.00049854	-0.87065	-0.00043817	503.26407214643484	19.145	0.70991	19.145	18.864	19.574	0					47	24	3	0	0	0	0.2331	1	2160	2160		28.234	8.6077	1	92844			12290	3862	6884	6884	15681	15681					0.011762583383415404
GTSSAASSPLK	11	Unmodified	_GTSSAASSPLK_					0	0	0		ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.2643737792969	2	503.264196	1004.51384	0.20144	0.00010138	0.39391	0.00019824	0.59536	0.00029962	503.2642870389399	19.347	0.62319	19.231	18.891	19.514	-0.11592					35	21	2	0	0	0	0.085994	1	2194	2194		42.835	13.398	1	81724			12291	3862	6884	6884	15682	15682					0.011762583383415404
GTSSAASSPLK	11	Unmodified	_GTSSAASSPLK_					0	0	0		ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2642822265625	2	503.264196	1004.51384	0.21003	0.0001057	-0.5618	-0.00028273	-0.35177	-0.00017703	503.26423988809637	19.273	0.80244	19.217	18.876	19.678	-0.055691					47	27	3	0	0	0	0.24585	1	2189	2189		27.088	7.4624	1	89786			12292	3862	6884	6884	15683	15683					0.011762583383415404
GTSSLFIYK	9	Unmodified	_GTSSLFIYK_					0	0	0		ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2769775390625	2	508.276575	1014.5386	0.57855	0.00029406	-1.0529	-0.00053517	-0.47435	-0.0002411	508.27606602641583	47.81	0.55104	47.81	47.493	48.044	0					34	19	2	0	0	0	0.026033	1	10868	10868		72.968	36.841	1	4537600			12293	7158	6885	6885	15684	15684					0.03190938211707817
GTSSLFIYK	9	Unmodified	_GTSSLFIYK_					0	0	0		ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.3020935058594	2	508.276575	1014.5386	0.58312	0.00029639	-0.86956	-0.00044198	-0.28643	-0.00014559	508.2762525723134	47.786	0.5665	47.834	47.456	48.022	0.04752					57	20	4	0	0	0	0.016005	1	10819	10819		85.642	41.783	1	2799100			12294	7158	6885	6885	15685	15685					0.03190938211707817
GTSSLFIYK	9	Unmodified	_GTSSLFIYK_					0	0	0		ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.27685546875	2	508.276575	1014.5386	0.55534	0.00028227	-0.81661	-0.00041506	-0.26127	-0.0001328	508.27628288147923	47.749	0.6098	47.792	47.401	48.011	0.043324					60	22	4	0	0	0	0.0080395	1	10833	10833		92.653	40.385	1	4083700			12295	7158	6885	6885	15686	15686					0.03190938211707817
GTSSSAASSLK	11	Unmodified	_GTSSSAASSLK_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B;ARID1B|p.I1593Sfs*8|1|0.36|ENSG00000049618|chr6:157201409-157201409|G/-|frameshift_variant;ARID1B|p.Y1345Wfs*99|1|0.17|ENSG00000049618|chr6:157198870-157198874|ATGGA/-|frameshift_variant;ARID1A|p.G1139Lfs*21|1|0.23|ENSG00000117713|chr1:26772507-26772510|AGGA/-|frameshift_variant;ARID1A|p.N1475Kfs*6|1|0.07|ENSG00000117713|chr1:26774652-26774652|C/-|frameshift_variant;ARID1A|p.F1728Wfs*7|1|0.28|ENSG00000117713|chr1:26779078-26779079|TC/-|frameshift_variant;ARID1A|p.I1788Kfs*15|1|0.12|ENSG00000117713|chr1:26779260-26779261|-/AAAG|frameshift_variant;nc|ENSG00000117713|O14497-3|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A;ENSG00000117713|ENST00000324856|ARID1A	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2538146972656	2	498.253828	994.493104	0.16783	8.3623E-05	-0.71169	-0.0003546	-0.54385	-0.00027098	498.25353758456697	15.542	0.58545	15.432	15.23	15.816	-0.10981					45	19	3	0	0	0	0.40701	1	1072	1072		10.315	3.6849	1	86535			12296	653	6886	6886	15687	15687					-0.004363320413176552
GTSSVIVSR	9	Unmodified	_GTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.2561340332031	2	453.256174	904.497795	-0.067085	-3.0407E-05	-0.36768	-0.00016665	-0.43477	-0.00019706	453.256108094491	23.063	1.3502	23.063	22.763	24.113	0					119	46	4	0	0	0	4.984E-07	4	3354	3302;3354;3396;3439		160.69	68.036	1	5272400			12297	989	6887	6887	15688;15689;15690;15691	15689					0.0417259689210141
GTSSVIVSR	9	Unmodified	_GTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.256103515625	2	453.256174	904.497795	-0.0095299	-4.3195E-06	-0.47503	-0.00021531	-0.48456	-0.00021963	453.25607595164655	23.182	1.0055	23.094	22.736	23.741	-0.08761					115	35	5	0	0	0	1.6536E-07	3	3383	3334;3383;3432		173.69	70.333	1	5568900			12298	989	6887	6887	15692;15693;15694	15693					0.0417259689210141
GTSSVIVSR	9	Unmodified	_GTSSVIVSR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.2561340332031	2	453.256174	904.497795	0.12084	5.4773E-05	-0.53859	-0.00024412	-0.41775	-0.00018935	453.2560545668937	23.165	0.99638	23.121	22.817	23.814	-0.044867					119	35	5	0	0	0	4.8913E-11	5	3334	3314;3334;3382;3424;3467		187.3	72.647	1	6071700			12299	989	6887	6887	15695;15696;15697;15698;15699	15696					0.0417259689210141
GTSTPSTPTT	10	Unmodified	_GTSTPSTPTT_					0	0	0		ENSG00000160094|ENST00000539719|ZNF362	ENSG00000160094|ENST00000539719|ZNF362	ENSG00000160094|ENST00000539719|ZNF362	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.9126281738281	2	475.227279	948.440005	0.37567	0.00017853	-1.902	-0.00090387	-1.5263	-0.00072534	475.2265148231871	21.089	0.42454	21.036	20.809	21.233	-0.05291					25	14	2	0	0	0	0.32054	1	2723	2723		3.2813	0	1	71873			12300	5437	6888	6888	15700	15700					-0.036277098240134364
GTSYPVTGR	9	Unmodified	_GTSYPVTGR_					0	0	0		ENST00000562374.1_3_16:75656785-75656947:-|nuORF	ENST00000562374.1_3_16:75656785-75656947:-|nuORF	ENST00000562374.1_3_16:75656785-75656947:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.24053955078125	2	469.240524	936.466495	-0.10378	-4.8698E-05	0.029901	1.4031E-05	-0.07388	-3.4667E-05	469.24049147494395	22.425	0.51898	22.425	22.189	22.708	0					24	17	2	0	0	0	0.23749	1	3150	3150		20.415	3.3016	1	99339			12301	11922	6889	6889	15701	15701					-0.004279761419979877
GTSYPVTGR	9	Unmodified	_GTSYPVTGR_					0	0	0		ENST00000562374.1_3_16:75656785-75656947:-|nuORF	ENST00000562374.1_3_16:75656785-75656947:-|nuORF	ENST00000562374.1_3_16:75656785-75656947:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.25506591796875	2	469.240524	936.466495	-0.045103	-2.1164E-05	-0.032645	-1.5318E-05	-0.077748	-3.6482E-05	469.2404577512934	22.537	0.46403	22.449	22.272	22.736	-0.087608					29	16	2	0	0	0	0.24471	1	3168	3168		17.113	0	1	99083			12302	11922	6889	6889	15702	15702					-0.004279761419979877
GTSYPVTGR	9	Unmodified	_GTSYPVTGR_					0	0	0		ENST00000562374.1_3_16:75656785-75656947:-|nuORF	ENST00000562374.1_3_16:75656785-75656947:-|nuORF	ENST00000562374.1_3_16:75656785-75656947:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.2542724609375	2	469.240524	936.466495	0.014187	6.657E-06	-0.25886	-0.00012147	-0.24467	-0.00011481	469.24055570414515	22.579	0.58084	22.534	22.209	22.789	-0.044867					32	19	2	0	0	0	0.24636	1	3176	3176		16.149	3.1066	1	68264			12303	11922	6889	6889	15703	15703					-0.004279761419979877
GTTATYEGR	9	Unmodified	_GTTATYEGR_					0	0	0		ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2	ENSG00000057294|ENST00000340811|PKP2	ENSG00000057294|ENST00000340811|PKP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.77178955078125	2	478.227613	954.440674	0.071656	3.4268E-05	1.5987	0.00076454	1.6704	0.00079881	478.2282559734827	28.445	0.59229	28.44	28.193	28.785	-0.0042572					33	20	2	0	0	0	0.24289	1	4920	4920		18.146	5.1039	1	161770			12304	720	6890	6890	15704	15704					-0.038368703842706964
GTTAVFINK	9	Unmodified	_GTTAVFINK_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L;ASH1L|p.P1413Sfs*29|1|0.04|ENSG00000116539|chr1:155478634-155478635|-/T|frameshift_variant	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.7689514160156	2	475.768917	949.523281	0.26965	0.00012829	0.71673	0.000341	0.98637	0.00046929	475.76894653554155	32.76	1.0345	32.76	32.199	33.233	0					102	36	4	0	0	0	0.0041491	1	6242	6242		93.166	49.393	1	970620			12305	2730	6891	6891	15705	15705					0.04650071414528156
GTTAVFINK	9	Unmodified	_GTTAVFINK_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L;ASH1L|p.P1413Sfs*29|1|0.04|ENSG00000116539|chr1:155478634-155478635|-/T|frameshift_variant	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7688903808594	2	475.768917	949.523281	0.43614	0.0002075	0.41185	0.00019594	0.84799	0.00040345	475.7687886834027	32.675	1.1024	32.73	32.126	33.228	0.055313					120	39	4	0	0	0	0.0098873	2	6253	6204;6253		79.596	37.757	1	1035400			12306	2730	6891	6891	15706;15707	15707					0.04650071414528156
GTTAVFINK	9	Unmodified	_GTTAVFINK_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L;ASH1L|p.P1413Sfs*29|1|0.04|ENSG00000116539|chr1:155478634-155478635|-/T|frameshift_variant	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.76910400390625	2	475.768917	949.523281	0.2662	0.00012665	0.56916	0.00027079	0.83536	0.00039744	475.76891381078343	32.642	1.0094	32.697	32.136	33.146	0.054375					110	36	4	0	0	0	0.0079761	1	6218	6218		82.529	46.402	1	1108800			12307	2730	6891	6891	15708	15708					0.04650071414528156
GTTEGEEITE	10	Unmodified	_GTTEGEEITE_					0	0	0		ENSG00000065613|ENST00000369755|SLK;nc|ENSG00000065613|Q9H2G2-2|SLK;SLK|p.Q919Efs*10|1|0.1|ENSG00000065613|chr10:104008326-104008336|TCAGAATATGC/-|frameshift_variant	ENSG00000065613|ENST00000369755|SLK	ENSG00000065613|ENST00000369755|SLK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.233154296875	2	533.232758	1064.45096	0.36727	0.00019584	0.12768	6.8081E-05	0.49494	0.00026392	533.2328408071974	21.903	0.73483	21.803	21.498	22.233	-0.10034					46	26	2	0	0	0	0.39935	1	2959	2959		3.5965	0	1	123190			12308	820	6892	6892	15709	15709					-0.07868352240370768
GTTFCMDLFSL	11	Unmodified	_GTTFCMDLFSL_					0	0	0			REV__nc|ENSG00000168126|Q8NHA6|OR2W6P	REV__nc|ENSG00000168126|Q8NHA6|OR2W6P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5292663574219	3	412.187604	1233.54098	0.089365	3.6835E-05	1.2531	0.00051651	1.3425	0.00055335	412.18809868784746	19.305	0.68189	19.25	19.08	19.762	-0.055693					36	23	2	0	0	0	0.33255	1	2154	2154		1.2148	0.51716	1	92474	+		12309	23078	6893	6893	15710	15710					-0.066447174371433
GTTHNFLYK	9	Unmodified	_GTTHNFLYK_					0	0	0		nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C;ENST00000599239.5_1_19:48565437-48599986:-|nuORF;ENST00000596510.5_1_19:48556252-48575644:-|nuORF	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7774658203125	2	540.777274	1079.53999	0.33939	0.00018353	-0.041443	-2.2412E-05	0.29794	0.00016112	540.7772820221693	26.239	1.2946	26.239	25.769	27.063	0					118	45	4	0	0	0	0.0010968	5	4290	4209;4247;4290;4333;4379		121.53	98.798	1	2163400			12310	1988	6894	6894	15711;15712;15713;15714;15715	15713					0.003405723004561878
GTTHNFLYK	9	Unmodified	_GTTHNFLYK_					0	0	0		nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C;ENST00000599239.5_1_19:48565437-48599986:-|nuORF;ENST00000596510.5_1_19:48556252-48575644:-|nuORF	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7774047851562	2	540.777274	1079.53999	0.34147	0.00018466	-0.050793	-2.7468E-05	0.29067	0.00015719	540.7772361544462	26.276	1.1881	26.238	25.75	26.938	-0.038671					113	41	4	0	0	0	0.0010968	4	4311	4267;4311;4365;4421		121.53	96.135	1	2572300			12311	1988	6894	6894	15716;15717;15718;15719	15717					0.003405723004561878
GTTHNFLYK	9	Unmodified	_GTTHNFLYK_					0	0	0		nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C;ENST00000599239.5_1_19:48565437-48599986:-|nuORF;ENST00000596510.5_1_19:48556252-48575644:-|nuORF	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7775268554688	2	540.777274	1079.53999	0.61169	0.00033079	-0.22056	-0.00011927	0.39113	0.00021151	540.7771598046788	26.356	1.1737	26.334	25.774	26.947	-0.022238					112	41	5	0	0	0	0.001957	4	4365	4276;4322;4365;4410		110.55	87.816	1	2283800			12312	1988	6894	6894	15720;15721;15722;15723	15722					0.003405723004561878
GTTITLVLK	9	Unmodified	_GTTITLVLK_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000559111.1_1_15:99798356-99798647:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.30267333984375	2	473.302593	944.590633	0.18021	8.5295E-05	0.1127	5.3343E-05	0.29292	0.00013864	473.30258172679237	49.623	1.0563	49.623	49.351	50.407	0					88	38	3	0	0	0	0.0046246	2	11467	11420;11467		89.401	37.132	1	3949000			12313	6099	6895	6895	15724;15725	15725					0.11612101625462401
GTTITLVLK	9	Unmodified	_GTTITLVLK_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000559111.1_1_15:99798356-99798647:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.3026123046875	2	473.302593	944.590633	0.19934	9.4349E-05	0.14416	6.8233E-05	0.34351	0.00016258	473.30255247112103	49.642	1.0019	49.687	49.266	50.268	0.044891					101	37	4	0	0	0	0.0046246	2	11469	11421;11469		89.401	37.132	1	4368400			12314	6099	6895	6895	15726;15727	15727					0.11612101625462401
GTTITLVLK	9	Unmodified	_GTTITLVLK_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000559111.1_1_15:99798356-99798647:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.30267333984375	2	473.302593	944.590633	0.18117	8.5747E-05	0.077589	3.6723E-05	0.25876	0.00012247	473.3025360682034	49.63	0.93739	49.651	49.314	50.252	0.020691					96	34	4	0	0	0	0.0098873	2	11409	11409;11457		79.596	27.328	1	4153800			12315	6099	6895	6895	15728;15729	15728					0.11612101625462401
GTTIYKEFEK	10	Unmodified	_GTTIYKEFEK_					0	0	0		ENSG00000163541|ENST00000393868|SUCLG1	ENSG00000163541|ENST00000393868|SUCLG1	ENSG00000163541|ENST00000393868|SUCLG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.5476379394531	3	405.880044	1214.6183	0.43504	0.00017657	0.75081	0.00030474	1.1858	0.00048131	405.8803124195795	33.733	0.69128	33.799	33.484	34.176	0.06636					39	24	2	0	0	0	0.31555	1	6537	6537		13.519	9.9316	1	358810			12316	5698	6896	6896	15730	15730					0.019579600950464737
GTTKVDALK	9	Unmodified	_GTTKVDALK_					0	0	0		ENSG00000115204|ENST00000380044|MPV17	ENSG00000115204|ENST00000380044|MPV17	ENSG00000115204|ENST00000380044|MPV17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7738037109375	2	466.7742	931.533846	-0.197	-9.1955E-05	-0.063582	-2.9678E-05	-0.26058	-0.00012163	466.7740755637196	15.739	0.76456	15.739	15.557	16.322	0					63	26	5	0	0	0	0.059067	1	1115	1115		49.527	23.259	1	267790			12317	2615	6897	6897	15731	15731					0.06534054068958994
GTTKVDALK	9	Unmodified	_GTTKVDALK_					0	0	0		ENSG00000115204|ENST00000380044|MPV17	ENSG00000115204|ENST00000380044|MPV17	ENSG00000115204|ENST00000380044|MPV17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7740478515625	2	466.7742	931.533846	-0.16007	-7.4715E-05	-0.15583	-7.2738E-05	-0.3159	-0.00014745	466.7741107462537	15.844	0.81752	15.734	15.517	16.335	-0.10981					60	27	4	0	0	0	0.043711	1	1147	1147		55.235	23.966	1	288320			12318	2615	6897	6897	15732	15732					0.06534054068958994
GTTKVDALK	9	Unmodified	_GTTKVDALK_					0	0	0		ENSG00000115204|ENST00000380044|MPV17	ENSG00000115204|ENST00000380044|MPV17	ENSG00000115204|ENST00000380044|MPV17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.77392578125	2	466.7742	931.533846	0.018642	8.7016E-06	-0.41583	-0.0001941	-0.39719	-0.0001854	466.77398384809237	15.797	0.75091	15.733	15.545	16.296	-0.064413					57	25	4	0	0	0	0.059067	1	1132	1132		49.527	14.595	1	268870			12319	2615	6897	6897	15733	15733					0.06534054068958994
GTTLGTVLVIA	11	Unmodified	_GTTLGTVLVIA_					0	0	0		nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	nc|ENSG00000164506|Q5T5C0-3|STXBP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7899169921875	2	522.818607	1043.62266	0.48001	0.00025096	-0.42504	-0.00022222	0.054967	2.8738E-05	522.8184200965214	39.681	0.67837	39.774	39.497	40.176	0.09267					57	23	3	0	0	0	0.29118	1	8427	8427		27.629	1.3607	1	712970			12320	5849	6898	6898	15734	15734					0.10259469308630287
GTTSDQFLR	9	Unmodified	_GTTSDQFLR_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7569580078125	2	512.756538	1023.49852	0.15743	8.0723E-05	0.59996	0.00030764	0.75739	0.00038836	512.7565698858004	31.552	0.51609	31.552	31.284	31.8	0					38	18	3	0	0	0	0.022205	1	5903	5903		63.227	35.599	1	421480			12321	6741	6899	6899	15735	15735					-0.012286084588481572
GTTSDQFLR	9	Unmodified	_GTTSDQFLR_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2430419921875	2	512.756538	1023.49852	0.12867	6.5974E-05	-0.25807	-0.00013233	-0.1294	-6.6352E-05	512.7563250564029	31.569	0.47336	31.611	31.322	31.795	0.042364					26	16	2	0	0	0	0.2422	1	5937	5937		19.362	8.538	1	716270			12322	6741	6899	6899	15736	15736					-0.012286084588481572
GTTSDQFLR	9	Unmodified	_GTTSDQFLR_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	512.756538	1023.49852	0.20335	0.00010427	0.51635	0.00026476	0.7197	0.00036903	512.7566466120201	31.511	0.68429	31.552	31.206	31.89	0.040989	-0.019968	9.9595E-05	NaN	63.227	39	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414590			12323	6741	6899	6899							-0.012286084588481572
GTTVHRLRFPQ	11	Unmodified	_GTTVHRLRFPQ_					0	0	0			REV__RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	REV__RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.2633056640625	3	437.914194	1310.72075	0.19216	8.4148E-05	1.8284	0.00080068	2.0205	0.00088482	437.9148424225819	38.707	0.18958	38.806	38.678	38.868	0.098236					9	6	2	0	0	0	0.44966	1	8087	8087		4.7159	0.59929	1	89633	+		12324	18840	6900	6900	15737	15737					0.07782090677187625
GTTVHRLRFPQ	11	Unmodified	_GTTVHRLRFPQ_					0	0	0			REV__RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	REV__RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	437.914194	1310.72075	-0.35934	-0.00015736	1.8229	0.00079826	1.4635	0.0006409	438.24893556674385	38.75	0.33864	38.75	38.649	38.988	0	-0.027996	-3.5517E-06	NaN	4.7159	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106100	+		12325	18840	6900	6900							0.07782090677187625
GTTVHRLRFPQ	11	Unmodified	_GTTVHRLRFPQ_					0	0	0			REV__RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	REV__RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	437.914194	1310.72075	0.19216	8.4148E-05	1.8284	0.00080068	2.0205	0.00088482	437.9148424225819	38.707	0.18958	38.806	38.678	38.868	0.098236	0.027996	3.6976E-06	NaN	4.7159	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89633	+		12326	18840	6900	6900							0.07782090677187625
GTVAGAAVLLK	11	Unmodified	_GTVAGAAVLLK_					0	0	0		ENST00000589305.5_1_19:55562362-55574430:-|nuORF;ENSG00000160439|ENST00000415061|RDH13	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.76910400390625	2	500.313492	998.612431	0.4891	0.0002447	0.40356	0.00020191	0.89266	0.00044661	500.31358496143037	45.132	0.42292	45.201	44.922	45.345	0.068573					25	14	2	0	0	0	0.24987	1	10052	10052		33.445	9.4243	1	250810			12327	5465	6901	6901	15738	15738					0.11306906374045411
GTVAGAAVLLK	11	Unmodified	_GTVAGAAVLLK_					0	0	0		ENST00000589305.5_1_19:55562362-55574430:-|nuORF;ENSG00000160439|ENST00000415061|RDH13	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	ENST00000589305.5_1_19:55562362-55574430:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7692565917969	2	500.313492	998.612431	0.46984	0.00023507	0.15526	7.7679E-05	0.6251	0.00031275	500.3135007055793	45.058	0.53531	45.133	44.911	45.446	0.075047					31	19	2	0	0	0	0.0063443	1	10047	10047		96.936	53.163	1	294330			12328	5465	6901	6901	15739	15739					0.11306906374045411
GTVDVTPFIK	10	Unmodified	_GTVDVTPFIK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8031616210938	2	538.802957	1075.59136	0.61709	0.00033249	-0.85392	-0.00046009	-0.23683	-0.0001276	538.8026997222589	53.44	0.68519	53.44	53.121	53.806	0					59	25	3	0	0	0	0.054069	1	12613	12613		74.2	20.796	1	777400			12329	8071	6902	6902	15740	15740					0.05658896274508152
GTVDVTPFIK	10	Unmodified	_GTVDVTPFIK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8033447265625	2	538.802957	1075.59136	0.44723	0.00024097	-0.76796	-0.00041378	-0.32073	-0.00017281	538.8027135428804	53.371	0.73331	53.427	53.111	53.845	0.056259					56	27	3	0	0	0	0.013566	1	12593	12593		90.135	20.797	1	894030			12330	8071	6902	6902	15741	15741					0.05658896274508152
GTVDVTPFIK	10	Unmodified	_GTVDVTPFIK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8034057617188	2	538.802957	1075.59136	0.6056	0.0003263	-0.45942	-0.00024754	0.14618	7.8763E-05	538.8027407749998	53.525	0.73818	53.516	53.218	53.956	-0.0096054					50	27	3	0	0	0	0.084071	1	12621	12621		67.838	6.2363	1	1073200			12331	8071	6902	6902	15742	15742					0.05658896274508152
GTVDVTPFIKK	11	Unmodified	_GTVDVTPFIKK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.8506469726562	2	602.850438	1203.68632	0.42896	0.0002586	0.074772	4.5077E-05	0.50373	0.00030367	602.8504326255397	42.853	0.71412	42.853	42.543	43.257	0					77	25	4	0	0	0	1.5991E-08	2	9336	9336;9387		135.72	98.644	1	2576500			12332	8071	6903	6903	15743;15744	15743					0.09262829745671297
GTVDVTPFIKK	11	Unmodified	_GTVDVTPFIKK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8506469726562	2	602.850438	1203.68632	0.36706	0.00022128	0.19324	0.00011649	0.5603	0.00033777	602.8504567653476	42.689	0.70272	42.774	42.487	43.19	0.085201					76	25	4	0	0	0	7.7232E-09	3	9325	9282;9325;9374		146.68	102.7	1	2476300			12333	8071	6903	6903	15745;15746;15747	15746					0.09262829745671297
GTVDVTPFIKK	11	Unmodified	_GTVDVTPFIKK_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8505249023438	2	602.850438	1203.68632	0.20055	0.0001209	0.34894	0.00021036	0.54949	0.00033126	602.8505464819158	42.607	0.86303	42.699	42.413	43.276	0.091358					82	31	4	0	0	0	7.7232E-09	3	9306	9257;9306;9357		146.68	102.7	1	2360000			12334	8071	6903	6903	15748;15749;15750	15749					0.09262829745671297
GTVEVELTV	9	Unmodified	_GTVEVELTV_					0	0	0			REV__ENST00000472828.1_1_2:179695251-179701862:-|nuORF	REV__ENST00000472828.1_1_2:179695251-179701862:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.246826171875	2	473.758215	945.501877	-0.14632	-6.9319E-05	1.8641	0.00088315	1.7178	0.00081383	473.75883930788046	25.017	0.52755	24.986	24.709	25.237	-0.031408					37	17	3	0	0	0	0.25989	1	3948	3948		14.838	1.7958	1	213660	+		12335	17057	6904	6904	15751	15751					0.02694641595144276
GTVFGVLASLC	11	Unmodified	_GTVFGVLASLC_					0	0	0		nc|ENSG00000181830|Q96A29-2|SLC35C1;ENSG00000181830|ENST00000314134|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7637939453125	2	533.78371	1065.55287	0.24714	0.00013192	-0.56075	-0.00029932	-0.3136	-0.0001674	533.7834288324743	42.303	1.2359	42.303	41.851	43.087	0					88	44	3	0	0	0	0.36257	1	9397	9397		16.149	0.30192	1	2716100			12336	7254	6905	6905	15752	15752					0.022712673683372486
GTVILPFILCR	11	Unmodified	_GTVILPFILCR_					0	0	0			REV__ENST00000481218.1_1_14:23236498-23239613:+|nuORF	REV__ENST00000481218.1_1_14:23236498-23239613:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.890869140625	3	411.245893	1230.71585	-0.38668	-0.00015902	-2.72	-0.0011186	-3.1067	-0.0012776	411.24476692338385	13.152	0.42624	13.152	13.031	13.457	0					18	14	2	0	0	0	0.33296	1	428	428		2.6312	0	1	30026	+		12337	16698	6906	6906	15753	15753					0.10972070490197439
GTVKPNANR	9	Unmodified	_GTVKPNANR_					0	0	0		ENST00000556438.6_1_14:55604729-55611986:+|nuORF;ENSG00000131981|ENST00000254301|LGALS3;ENST00000556263.1_1_14:55605083-55607082:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.76654052734375	2	478.76724	955.519927	-0.18515	-8.8644E-05	-0.35604	-0.00017046	-0.54119	-0.0002591	478.7668923190766	12.233	0.21319	12.233	12.151	12.364	0					10	7	2	0	0	0	0.34681	1	89	89		1.8442	1.1539	1	45602			12338	3602	6907	6907	15754	15754					0.04038821360506972
GTVLIIKSLHS	11	Unmodified	_GTVLIIKSLHS_					0	0	0		HLA-DPA1|p.R249H|1|0.18|ENSG00000231389|chr6:33068687-33068687|C/T|missense_variant	HLA-DPA1|p.R249H|1|0.18|ENSG00000231389|chr6:33068687-33068687|C/T|missense_variant	HLA-DPA1|p.R249H|1|0.18|ENSG00000231389|chr6:33068687-33068687|C/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.01123046875	2	584.358431	1166.70231	0.050528	2.9527E-05	-2.1368	-0.0012486	-2.0862	-0.0012191	584.3570960201554	102.39	0.057358	102.41	102.37	102.43	0.016685					11	7	2	0	0	0	0.33255	1	27249	27249		2.9952	0.26005	1	72173			12339	12425	6908	6908	15755	15755					0.1256253598260173
GTVRIGVAK	9	Unmodified	_GTVRIGVAK_					0	0	0		ENST00000539508.5_1_9:13136054-13190160:-|nuORF;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.78472900390625	2	450.784902	899.55525	0.10123	4.5634E-05	-0.16692	-7.5244E-05	-0.065685	-2.961E-05	450.78470017393073	19.787	0.5659	19.787	19.547	20.113	0					45	20	3	0	0	0	0.16685	1	2366	2366		28.495	5.7582	1	196190			12340	2115	6909	6909	15756	15756					0.10145483888334184
GTVRIGVAK	9	Unmodified	_GTVRIGVAK_					0	0	0		ENST00000539508.5_1_9:13136054-13190160:-|nuORF;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7845764160156	2	450.784902	899.55525	0.23932	0.00010788	-0.50453	-0.00022743	-0.26521	-0.00011955	450.7845942992682	19.941	0.60986	19.825	19.544	20.154	-0.11592					51	20	3	0	0	0	0.13296	2	2418	2370;2418		33.445	8.0456	1	207450			12341	2115	6909	6909	15757;15758	15758					0.10145483888334184
GTVRIGVAK	9	Unmodified	_GTVRIGVAK_					0	0	0		ENST00000539508.5_1_9:13136054-13190160:-|nuORF;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7846984863281	2	450.784902	899.55525	0.37115	0.00016731	-0.51907	-0.00023399	-0.14792	-6.6681E-05	450.78455715370694	19.897	0.5239	19.842	19.595	20.119	-0.055693					46	18	4	0	0	0	0.01909	1	2355	2355		65.474	21.615	1	220580			12342	2115	6909	6909	15759	15759					0.10145483888334184
GTVYFKEGK	9	Unmodified	_GTVYFKEGK_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.775634765625	2	514.7742	1027.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.004	1	22.004	21.504	22.504	0								0	0	0	0.19956	1	3013	3013		22.658	9.6156	1				12343	309	6910	6910	15760	15760					0.021180540689329064
GTVYFKEGK	9	Unmodified	_GTVYFKEGK_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.775390625	2	514.7742	1027.53385	0.24659	0.00012694	2.2803	0.0011738	2.5269	0.0013008	514.775272220374	21.999	0.40965	21.898	21.716	22.125	-0.10034					23	14	3	0	0	0	0.25112	1	3013	3013		16.149	3.1066	1	96628			12344	309	6910	6910	15761	15761					0.021180540689329064
GTVYFKEGK	9	Unmodified	_GTVYFKEGK_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7750854492188	2	514.7742	1027.53385	0.089826	4.624E-05	1.8611	0.00095805	1.9509	0.0010043	514.7751793222703	21.976	0.43075	21.927	21.689	22.12	-0.049377					23	15	2	0	0	0	0.21447	1	2990	2990		21.537	4.4241	1	91231			12345	309	6910	6910	15762	15762					0.021180540689329064
GTYAINPHLT	10	Unmodified	_GTYAINPHLT_					0	0	0		ENST00000502915.1_1_4:139482657-139483092:+|nuORF	ENST00000502915.1_1_4:139482657-139483092:+|nuORF	ENST00000502915.1_1_4:139482657-139483092:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.7953491210938	2	543.782556	1085.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.038	1	39.137	38.637	39.637	0.099407								0	0	0	0.34209	1	8189	8189		18.146	2.2992	1				12346	11285	6911	6911	15763	15763					0.011205549548776617
GTYAPAEVPK	10	Unmodified	_GTYAPAEVPK_					0	0	0		ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF	ENSG00000187134|ENST00000380872|AKR1C1	ENSG00000187134|ENST00000380872|AKR1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7721557617188	2	516.771657	1031.52876	0.23012	0.00011892	0.53962	0.00027886	0.76974	0.00039778	516.7718867729378	31.451	1.1432	31.492	31.15	32.293	0.040991					101	40	4	0	0	0	0.015119	3	5875	5824;5875;5921		77.049	49.42	1	4823600			12347	7666	6912	6912	15764;15765;15766	15765					0.014257502063173888
GTYAPPEVPR	10	Unmodified	_GTYAPPEVPR_					0	0	0		ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENST00000605322.1_1_10:5136636-5141836:+|nuORF;ENSG00000198610|ENST00000263126|AKR1C4	ENSG00000196139|ENST00000380554|AKR1C3	ENSG00000196139|ENST00000380554|AKR1C3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7833862304688	2	543.782556	1085.55056	0.57026	0.0003101	0.42713	0.00023227	0.99739	0.00054236	543.782984589847	37.942	1.5075	37.942	37.532	39.04	0					169	53	5	0	0	0	0.0027997	6	7839	7839;7879;7923;7969;8020;8078		104.48	67.28	1	16846000			12348	7826	6913	6913	15767;15768;15769;15770;15771;15772	15767					0.01120554954900399
GTYAPPEVPR	10	Unmodified	_GTYAPPEVPR_					0	0	0		ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENST00000605322.1_1_10:5136636-5141836:+|nuORF;ENSG00000198610|ENST00000263126|AKR1C4	ENSG00000196139|ENST00000380554|AKR1C3	ENSG00000196139|ENST00000380554|AKR1C3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7833251953125	2	543.782556	1085.55056	0.63359	0.00034453	0.2982	0.00016216	0.93179	0.00050669	543.7829005923217	37.888	1.4947	37.979	37.555	39.05	0.090881					188	54	5	0	0	0	0.0027997	4	7812	7812;7852;7897;7939		104.48	75.403	1	17558000			12349	7826	6913	6913	15773;15774;15775;15776	15773					0.01120554954900399
GTYAPPEVPR	10	Unmodified	_GTYAPPEVPR_					0	0	0		ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENST00000605322.1_1_10:5136636-5141836:+|nuORF;ENSG00000198610|ENST00000263126|AKR1C4	ENSG00000196139|ENST00000380554|AKR1C3	ENSG00000196139|ENST00000380554|AKR1C3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.7832641601562	2	543.782556	1085.55056	0.56483	0.00030714	0.4276	0.00023252	0.99242	0.00053966	543.7829344825085	37.767	1.4181	37.864	37.503	38.921	0.097527					185	51	5	0	0	0	0.0055648	6	7778	7778;7826;7868;7920;7967;8018		88.364	57.89	1	16418000			12350	7826	6913	6913	15777;15778;15779;15780;15781;15782	15777					0.01120554954900399
GTYDAKVKK	9	Unmodified	_GTYDAKVKK_					0	0	0		ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2872619628906	2	505.287474	1008.5604	-0.027825	-1.4059E-05	-0.066095	-3.3397E-05	-0.09392	-4.7457E-05	505.2878543935333	12.83	0.78844	12.83	12.669	13.457	0					88	27	4	0	0	0	0.0008224	3	235	235;275;317		125.04	75.105	1	4521300			12351	5422	6914	6914	15783;15784;15785	15783					0.05645742960280131
GTYDAKVKK	9	Unmodified	_GTYDAKVKK_					0	0	0		ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2872009277344	2	505.287474	1008.5604	-0.014215	-7.1828E-06	-0.047066	-2.3782E-05	-0.061281	-3.0965E-05	505.28784828367634	12.848	0.80452	12.749	12.611	13.416	-0.099291					89	27	4	0	0	0	0.0041491	3	240	240;284;336		93.166	49.393	1	4161500			12352	5422	6914	6914	15786;15787;15788	15786					0.05645742960280131
GTYDAKVKK	9	Unmodified	_GTYDAKVKK_					0	0	0		ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.28704833984375	2	505.287474	1008.5604	-0.10565	-5.3382E-05	-0.087566	-4.4246E-05	-0.19321	-9.7628E-05	505.2878103363462	12.87	0.83237	12.803	12.61	13.443	-0.067496					86	28	4	0	0	0	0.0023895	3	239	239;282;327		107.1	63.327	1	4491100			12353	5422	6914	6914	15789;15790;15791	15789					0.05645742960280131
GTYDILVTK	9	Unmodified	_GTYDILVTK_					0	0	0		nc|ENSG00000114302|P13861-2|PRKAR2A;ENSG00000114302|ENST00000265563|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2821350097656	2	505.281857	1008.54916	0.63622	0.00032147	-0.0095323	-4.8165E-06	0.62669	0.00031665	505.28197040127407	45.678	0.7938	45.678	45.452	46.246	0					53	28	3	0	0	0	0.003673	2	10234	10234;10280		96.936	25.013	1	670270			12354	2553	6915	6915	15792;15793	15792					0.045229208661680786
GTYDILVTK	9	Unmodified	_GTYDILVTK_					0	0	0		nc|ENSG00000114302|P13861-2|PRKAR2A;ENSG00000114302|ENST00000265563|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2823486328125	2	505.281857	1008.54916	0.46165	0.00023327	0.66537	0.0003362	1.127	0.00056946	505.2822986802382	45.559	0.8986	45.619	45.31	46.209	0.059837					49	31	3	0	0	0	0.010888	1	10183	10183		78.06	26.431	1	697700			12355	2553	6915	6915	15794	15794					0.045229208661680786
GTYDILVTK	9	Unmodified	_GTYDILVTK_					0	0	0		nc|ENSG00000114302|P13861-2|PRKAR2A;ENSG00000114302|ENST00000265563|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2823486328125	2	505.281857	1008.54916	0.46678	0.00023585	0.83419	0.0004215	1.301	0.00065735	505.28248219617285	45.513	0.84633	45.578	45.274	46.121	0.065048					56	30	3	0	0	0	0.016571	2	10168	10168;10217		69.338	23.639	1	839960			12356	2553	6915	6915	15795;15796	15795					0.045229208661680786
GTYGLDSVKK	10	Unmodified	_GTYGLDSVKK_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	ENSG00000087338|ENST00000282570|GMCL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.3197021484375	2	534.290214	1066.56587	0.6319	0.00033762	-0.34841	-0.00018615	0.28349	0.00015146	534.2900992862953	26.606	0.2911	26.584	26.439	26.73	-0.022236					15	9	2	0	0	0	0.31289	1	4401	4401		16.566	4.9256	1	220410			12357	1305	6916	6916	15797	15797					0.03525421752101465
GTYHGMTLK	9	Oxidation (M)	_GTYHGM(Oxidation (M))TLK_		GTYHGM(1)TLK		GTYHGM(96)TLK	0	0	1		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2500610351562	2	512.250034	1022.48552	0.029826	1.5278E-05	-0.082922	-4.2477E-05	-0.053096	-2.7199E-05	512.249944472188	15.061	0.97223	15.061	14.819	15.791	0					92	33	5	0	0	0	0.0037449	2	908	881;908		96.367	54.527	1	1622900			12358	3780	6917	6917	15798;15799	15799		471			-0.024827628425782677
GTYHGMTLK	9	Oxidation (M)	_GTYHGM(Oxidation (M))TLK_		GTYHGM(1)TLK		GTYHGM(77)TLK	0	0	1		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2498168945312	2	512.250034	1022.48552	0.043806	2.244E-05	-0.12147	-6.2222E-05	-0.077661	-3.9782E-05	512.2499360498886	15.192	1.053	15.082	14.818	15.871	-0.10981					97	36	5	0	0	0	0.011693	1	962	962		76.825	36.875	1	1474100			12359	3780	6917	6917	15800	15800		471			-0.024827628425782677
GTYHGMTLK	9	Oxidation (M)	_GTYHGM(Oxidation (M))TLK_		GTYHGM(1)TLK		GTYHGM(64)TLK	0	0	1		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2500610351562	2	512.250034	1022.48552	-0.061725	-3.1619E-05	-0.092012	-4.7133E-05	-0.15374	-7.8752E-05	512.2499511804391	15.217	0.96626	15.152	14.898	15.864	-0.064414					82	32	5	0	0	0	0.020233	2	933	933;984		63.961	29.559	1	1652500			12360	3780	6917	6917	15801;15802	15801		471			-0.024827628425782677
GTYIPSFQYI	10	Unmodified	_GTYIPSFQYI_					0	0	0			REV__ENST00000260118.6_1_8:63927894-63927963:-|nuORF	REV__ENST00000260118.6_1_8:63927894-63927963:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.800537109375	2	594.800414	1187.58628	0.63188	0.00037584	-2.8033	-0.0016674	-2.1714	-0.0012915	594.8004998729151	79.232	0.4352	79.203	78.983	79.418	-0.028923					36	17	3	0	0	0	0.33104	4	20508	20508;20529;20573;20583		16.149	5.3252	1	168400	+		12361	15870	6918	6918	15803;15804;15805;15806	15803					-1.4075880699238041E-05
GTYLTLCGKW	10	Unmodified	_GTYLTLCGKW_					0	0	0			REV__ENST00000491331.5_1_2:192543720-192546744:+|nuORF	REV__ENST00000491331.5_1_2:192543720-192546744:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7483520507812	2	571.289159	1140.56377	0.40886	0.00023357	-3.4571	-0.001975	-3.0483	-0.0017415	571.2876964174678	62.354	0.38071	62.451	62.254	62.635	0.096985					25	13	3	0	0	0	0.29038	1	15350	15350		18.146	3.3081	1	148480	+		12362	17789	6919	6919	15807	15807					-0.0008933025733313116
GTYRDANIK	9	Unmodified	_GTYRDANIK_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.27197265625	2	519.272355	1036.53016	0.20849	0.00010826	-0.82829	-0.00043011	-0.6198	-0.00032185	519.2720525338608	15.869	1.161	15.869	15.528	16.689	0					85	40	4	0	0	0	0.00054549	1	1154	1154		128.57	80.824	1	2493900			12363	2439	6920	6920	15808	15808					0.01335384295066433
GTYRDANIK	9	Unmodified	_GTYRDANIK_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2720947265625	2	519.272355	1036.53016	0.16101	8.3607E-05	-0.75701	-0.00039309	-0.596	-0.00030949	519.2721208557534	15.94	1.1267	15.878	15.547	16.674	-0.062534					98	38	5	0	0	0	5.4053E-05	1	1161	1161		148.27	73.845	1	2501100			12364	2439	6920	6920	15809	15809					0.01335384295066433
GTYSLVPKK	9	Unmodified	_GTYSLVPKK_					0	0	0		ENSG00000181090|ENST00000460843|EHMT1;nc|ENSG00000181090|Q9H9B1-4|EHMT1;ENST00000371394.6_1_9:140611085-140686569:+|nuORF;nc|ENSG00000181090|Q9H9B1-3|EHMT1	ENSG00000181090|ENST00000460843|EHMT1	ENSG00000181090|ENST00000460843|EHMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7878723144531	2	496.792392	991.570232	0.75732	0.00037623	0.6334	0.00031467	1.3907	0.0006909	496.79198970266503	34.042	0.46937	34.042	33.808	34.277	0					35	16	3	0	0	0	0.25314	1	6687	6687		15.847	2.3393	1	301680			12365	7223	6921	6921	15810	15810					0.0741093096565919
GTYTDVTPR	9	Unmodified	_GTYTDVTPR_					0	0	0		ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7896423339844	2	505.251089	1008.48762	0.11212	5.6651E-05	-2.9667	-0.0014989	-2.8546	-0.0014423	505.24912058156406	27.212	0.6804	27.2	27.101	27.781	-0.01156					39	23	2	0	0	0	0.19208	1	4659	4659		33.445	11.698	1	346780			12366	1238	6922	6922	15811	15811					-0.016280108331329757
GTYTSSMALK	10	Oxidation (M)	_GTYTSSM(Oxidation (M))ALK_		GTYTSSM(1)ALK		GTYTSSM(120)ALK	0	0	1		nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7605590820312	2	537.760432	1073.50631	0.26697	0.00014357	-0.020955	-1.1269E-05	0.24602	0.0001323	537.7603624293173	23.303	0.94298	23.303	22.791	23.734	0					62	32	2	0	0	0	0.0009599	3	3414	3316;3365;3414		121.35	81.396	1	682910			12367	1155	6923	6923	15812;15813;15814	15814		139			-0.027502172536060243
GTYTSSMALK	10	Oxidation (M)	_GTYTSSM(Oxidation (M))ALK_		GTYTSSM(1)ALK		GTYTSSM(130)ALK	0	0	1		nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7605590820312	2	537.760432	1073.50631	0.23037	0.00012388	0.0043397	2.3337E-06	0.23471	0.00012622	537.7603978257799	23.422	1.0701	23.334	22.82	23.89	-0.087608					68	37	2	0	0	0	0.00013576	4	3441	3349;3392;3441;3481		132.38	92.43	1	745660			12368	1155	6923	6923	15815;15816;15817;15818	15817		139			-0.027502172536060243
GTYTSSMALK	10	Oxidation (M)	_GTYTSSM(Oxidation (M))ALK_		GTYTSSM(1)ALK		GTYTSSM(130)ALK	0	0	1		nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.760498046875	2	537.760432	1073.50631	0.47874	0.00025745	-0.21216	-0.00011409	0.26658	0.00014336	537.7602776137278	23.243	1.0049	23.198	22.898	23.903	-0.044867					67	35	2	0	0	0	0.00013576	4	3439	3353;3399;3439;3486		132.38	92.43	1	784170			12369	1155	6923	6923	15819;15820;15821;15822	15821		139			-0.027502172536060243
GTYVKPLSNK	10	Unmodified	_GTYVKPLSNK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ENST00000589744.1_1_17:73949530-73951667:-|nuORF	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8143310546875	2	553.813856	1105.61316	0.3425	0.00018968	0.3836	0.00021244	0.72611	0.00040213	553.8139945455957	20.227	0.91977	20.227	19.933	20.853	0					83	33	4	0	0	0	1.4539E-08	3	2450	2450;2498;2555		162.31	110.68	1	1034500			12370	5516	6924	6924	15823;15824;15825	15823					0.06457701023077789
GTYVKPLSNK	10	Unmodified	_GTYVKPLSNK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ENST00000589744.1_1_17:73949530-73951667:-|nuORF	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8143310546875	2	553.813856	1105.61316	0.55667	0.00030829	0.25792	0.00014284	0.81459	0.00045113	553.8139100294991	20.405	0.90719	20.295	20.016	20.923	-0.11003					79	32	3	0	0	0	4.613E-09	4	2544	2499;2544;2589;2642		174.48	128.78	1	1125300			12371	5516	6924	6924	15826;15827;15828;15829	15827					0.06457701023077789
GTYVKPLSNK	10	Unmodified	_GTYVKPLSNK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ENST00000589744.1_1_17:73949530-73951667:-|nuORF	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8141479492188	2	553.813856	1105.61316	0.61368	0.00033987	0.16791	9.2992E-05	0.78159	0.00043286	553.8138516781179	20.345	0.93676	20.292	19.981	20.917	-0.05291					76	33	3	0	0	0	1.4539E-08	4	2517	2470;2517;2562;2613		162.31	122.08	1	927220			12372	5516	6924	6924	15830;15831;15832;15833	15831					0.06457701023077789
GTYVPGYLLK	10	Unmodified	_GTYVPGYLLK_					0	0	0		ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;nc|ENSG00000205336|Q9Y653-4|ADGRG1	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8136596679688	2	555.813325	1109.6121	0.55194	0.00030678	0.052146	2.8984E-05	0.60409	0.00033576	555.8132853527501	53.833	0.51437	53.833	53.622	54.136	0					58	18	4	0	0	0	0.21213	1	12737	12737		40.239	19.786	1	1733900			12373	8283	6925	6925	15834	15834					0.061674866541807205
GTYVPGYLLK	10	Unmodified	_GTYVPGYLLK_					0	0	0		ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;nc|ENSG00000205336|Q9Y653-4|ADGRG1	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8133544921875	2	555.813325	1109.6121	0.24641	0.00013696	0.5223	0.0002903	0.76871	0.00042726	555.813567224008	53.803	0.7349	53.859	53.585	54.32	0.056259					72	27	4	0	0	0	0.21213	1	12733	12733		40.239	22.093	1	1603300			12374	8283	6925	6925	15835	15835					0.061674866541807205
GTYVPGYLLK	10	Unmodified	_GTYVPGYLLK_					0	0	0		ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;nc|ENSG00000205336|Q9Y653-4|ADGRG1	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8132934570312	2	555.813325	1109.6121	0.383	0.00021287	0.26384	0.00014665	0.64683	0.00035952	555.8133828753283	53.967	0.65396	53.954	53.659	54.313	-0.013084					62	23	4	0	0	0	0.18121	1	12764	12764		55.503	31.482	1	1631900			12375	8283	6925	6925	15836	15836					0.061674866541807205
GTYVSSVPR	9	Unmodified	_GTYVSSVPR_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2572937011719	2	483.256174	964.497795	0.401	0.00019378	-0.10522	-5.0847E-05	0.29578	0.00014294	483.2567757764066	29.47	1.8052	29.47	29.142	30.948	0					197	64	5	0	0	0	1.6536E-07	6	5264	5264;5305;5356;5399;5445;5496		173.69	118.91	1	24659000			12376	8207	6926	6926	15837;15838;15839;15840;15841;15842	15837					0.01412596892100737
GTYVSSVPR	9	Unmodified	_GTYVSSVPR_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2569885253906	2	483.256174	964.497795	0.26935	0.00013016	0.083651	4.0425E-05	0.353	0.00017059	483.25689364325996	29.405	1.9952	29.417	29.08	31.076	0.012264					204	69	5	0	0	0	2.32E-07	7	5289	5246;5289;5334;5380;5426;5478;5536		171.09	116.31	1	24728000			12377	8207	6926	6926	15843;15844;15845;15846;15847;15848;15849	15844					0.01412596892100737
GTYVSSVPR	9	Unmodified	_GTYVSSVPR_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2573547363281	2	483.256174	964.497795	0.085943	4.1532E-05	0.21876	0.00010572	0.3047	0.00014725	483.2569458307383	29.439	1.6062	29.453	29.113	30.72	0.013475					171	55	5	0	0	0	4.984E-07	6	5258	5258;5302;5346;5389;5436;5501		160.69	114.67	1	25926000			12378	8207	6926	6926	15850;15851;15852;15853;15854;15855	15850					0.01412596892100737
GVAAVASVPG	10	Unmodified	_GVAAVASVPG_					0	0	0			REV__ENST00000257745.8_1_7:104654841-104681359:+|nuORF	REV__ENST00000257745.8_1_7:104654841-104681359:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2461242675781	2	414.23471	826.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.965	1	14.856	14.356	15.356	-0.10981								0	0	0	0.36922	1	886	886		6.7232	0	1		+		12379	19560	6927	6927	15856	15856					0.034698268346687655
GVAAVRWRP	9	Unmodified	_GVAAVRWRP_					0	0	0			REV__ENST00000372583.5_1_1:42050979-42094538:-|nuORF	REV__ENST00000372583.5_1_1:42050979-42094538:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7587890625	2	506.295968	1010.57738	0.52982	0.00026825	-1.1056	-0.00055975	-0.57575	-0.0002915	506.29513594927164	29.198	0.13112	29.198	29.142	29.273	0					5	4	2	0	0	0	0.25879	1	5194	5194		4.756	0.42677	1	28596	+		12380	20415	6928	6928	15857	15857					0.07251708356750441
GVADALLYR	9	Unmodified	_GVADALLYR_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.8134765625	2	489.274367	976.53418	0.63164	0.00030904	0.18455	9.0296E-05	0.81619	0.00039934	489.27435845125405	50.989	0.53674	50.989	50.686	51.222	0					43	19	3	0	0	0	0.16853	1	11851	11851		31.268	16.02	1	442290			12381	2453	6929	6929	15858	15858					0.04497473788796924
GVADALLYR	9	Unmodified	_GVADALLYR_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.8135681152344	2	489.274367	976.53418	0.50521	0.00024719	0.12744	6.2351E-05	0.63265	0.00030954	489.2743483441308	50.962	0.79962	51.008	50.522	51.321	0.046574					48	29	3	0	0	0	0.18936	1	11845	11845		26.268	8.1218	1	482100			12382	2453	6929	6929	15859	15859					0.04497473788796924
GVADKILKK	9	Unmodified	_GVADKILKK_					0	0	0		ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.77703857421875	2	486.316035	970.617516	0.048214	2.3447E-05	-0.15197	-7.3905E-05	-0.10375	-5.0458E-05	486.3158961071252	22.67	0.69015	22.67	22.42	23.11	0					55	23	3	0	0	0	0.067763	1	3206	3206		67.838	3.8776	1	353620			12383	3117	6930	6930	15860	15860					0.13103210236658924
GVADKILKK	9	Unmodified	_GVADKILKK_					0	0	0		ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.777099609375	2	486.316035	970.617516	0.043941	2.1369E-05	-0.14221	-6.9157E-05	-0.098265	-4.7788E-05	486.31589361651606	22.759	0.67739	22.671	22.461	23.138	-0.087608					51	23	3	0	0	0	0.082647	1	3239	3239		61.602	12.048	1	398980			12384	3117	6930	6930	15861	15861					0.13103210236658924
GVADKILKK	9	Unmodified	_GVADKILKK_					0	0	0		ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.77703857421875	2	486.316035	970.617516	0.15682	7.6262E-05	-0.25889	-0.0001259	-0.10208	-4.9642E-05	486.31581781032867	22.773	0.69563	22.728	22.471	23.167	-0.044867					53	24	3	0	0	0	0.21026	1	3226	3226		22.658	3.2961	1	364330			12385	3117	6930	6930	15862	15862					0.13103210236658924
GVAEVVFVK	9	Unmodified	_GVAEVVFVK_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.802978515625	2	474.28166	946.548768	0.39757	0.00018856	0.22531	0.00010686	0.62288	0.00029542	474.2818234756969	47.367	0.36456	47.367	47.214	47.578	0					21	12	2	0	0	0	0.08298	1	10747	10747		51.63	31.176	1	310460			12386	1548	6931	6931	15863	15863					0.07335545936962262
GVAEVVFVK	9	Unmodified	_GVAEVVFVK_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.80316162109375	2	474.28166	946.548768	0.2694	0.00012777	0.22982	0.000109	0.49922	0.00023677	474.2817340854165	47.318	0.40771	47.371	47.243	47.651	0.052574					23	14	2	0	0	0	0.10058	1	10705	10705		53.833	29.159	1	224590			12387	1548	6931	6931	15864	15864					0.07335545936962262
GVAEVVFVK	9	Unmodified	_GVAEVVFVK_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.8031311035156	2	474.28166	946.548768	0.79902	0.00037896	-0.3501	-0.00016605	0.44892	0.00021292	474.2814213445711	47.302	0.36693	47.356	47.256	47.622	0.054371					21	13	2	0	0	0	0.08298	1	10725	10725		43.772	18.373	1	177560			12388	1548	6931	6931	15865	15865					0.07335545936962262
GVAFIFNQK	9	Unmodified	_GVAFIFNQK_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.L286Afs*17|1|0.03|ENSG00000243156|chr22:17899540-17899541|-/GC|frameshift_variant;MICAL3|p.S443Ifs*19|1|0.08|ENSG00000243156|chr22:17895405-17895406|-/CACACATACAAGGA|frameshift_variant;MICAL3|p.L503Sfs*14|1|0.08|ENSG00000243156|chr22:17893847-17893848|-/A|frameshift_variant;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2	ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2848510742188	2	512.284734	1022.55492	0.31576	0.00016176	0.066469	3.4051E-05	0.38222	0.00019581	512.2847187310629	52.23	1.2295	52.23	51.86	53.09	0					136	44	4	0	0	0	1.576E-05	5	12238	12193;12238;12283;12336;12391		154.46	99.69	1	8649600			12389	12703;8556	6932	6932	15866;15867;15868;15869;15870	15867					0.04454064168464811
GVAFIFNQK	9	Unmodified	_GVAFIFNQK_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.L286Afs*17|1|0.03|ENSG00000243156|chr22:17899540-17899541|-/GC|frameshift_variant;MICAL3|p.S443Ifs*19|1|0.08|ENSG00000243156|chr22:17895405-17895406|-/CACACATACAAGGA|frameshift_variant;MICAL3|p.L503Sfs*14|1|0.08|ENSG00000243156|chr22:17893847-17893848|-/A|frameshift_variant;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2	ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2848510742188	2	512.284734	1022.55492	0.2934	0.0001503	0.028185	1.4439E-05	0.32158	0.00016474	512.2847207158967	52.153	1.1618	52.203	51.846	53.008	0.050575					129	42	4	0	0	0	1.576E-05	5	12217	12172;12217;12267;12318;12370		154.46	99.69	1	8774900			12390	12703;8556	6932	6932	15871;15872;15873;15874;15875	15872					0.04454064168464811
GVAFIFNQK	9	Unmodified	_GVAFIFNQK_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;MICAL3|p.L286Afs*17|1|0.03|ENSG00000243156|chr22:17899540-17899541|-/GC|frameshift_variant;MICAL3|p.S443Ifs*19|1|0.08|ENSG00000243156|chr22:17895405-17895406|-/CACACATACAAGGA|frameshift_variant;MICAL3|p.L503Sfs*14|1|0.08|ENSG00000243156|chr22:17893847-17893848|-/A|frameshift_variant;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2	ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2848510742188	2	512.284734	1022.55492	0.076313	3.9094E-05	0.22691	0.00011624	0.30323	0.00015534	512.2848029486529	52.332	1.1106	52.332	51.954	53.065	-0.00080872					139	40	4	0	0	0	1.576E-05	4	12258	12212;12258;12310;12365		154.46	106.12	1	8208100			12391	12703;8556	6932	6932	15876;15877;15878;15879	15877					0.04454064168464811
GVAFWISKDSL	11	Unmodified	_GVAFWISKDSL_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2;HNRNPUL2|p.L598Afs*2|1|0.43|ENSG00000214753|chr11:62717177-62717178|AA/-|frameshift_variant;HNRNPUL2|p.C602Mfs*6|1|0.16|ENSG00000214753|chr11:62717166-62717167|-/T|frameshift_variant	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.2131652832031	3	408.220401	1221.63937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.124	1	48.167	47.667	48.667	0.04332								0	0	0	0.31994	1	10977	10977		7.9454	0	1				12392	8390	6933	6933	15880	15880					0.03741970194550959
GVALTLHL	8	Unmodified	_GVALTLHL_					0	0	0		ENST00000565743.1_1_16:84682580-84682835:+|nuORF	ENST00000565743.1_1_16:84682580-84682835:+|nuORF	ENST00000565743.1_1_16:84682580-84682835:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.5788269042969	2	412.255446	822.496338	0.25613	0.00010559	-0.34088	-0.00014053	-0.084752	-3.4939E-05	412.25514590832506	29.61	0.72678	29.623	29.389	30.116	0.012264					40	24	3	0	0	0	0.32778	1	5322	5322		20.871	0	1	168300			12393	11970	6934	6934	15881	15881					0.07799007593985152
GVANALAHK	9	Unmodified	_GVANALAHK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.7478942871094	2	440.753601	879.49265	0.081727	3.6021E-05	1.6779	0.00073954	1.7596	0.00077556	440.7541496236578	17.604	0.29553	17.604	17.424	17.719	0					21	9	3	0	0	0	0.006189	3	1703	1686;1694;1703		85.272	46.032	1	155530			12394	8438	6935	6935	15882;15883;15884	15884					0.048083378201340565
GVANALAHK	9	Unmodified	_GVANALAHK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.7477111816406	2	440.753601	879.49265	-0.091339	-4.0258E-05	1.2661	0.00055803	1.1747	0.00051777	440.7540058829674	17.792	0.28979	17.674	17.467	17.757	-0.11739					21	9	4	0	0	0	0.0063774	1	1742	1742		96.285	42.709	1	155090			12395	8438	6935	6935	15885	15885					0.048083378201340565
GVANALAHK	9	Unmodified	_GVANALAHK_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.7535705566406	2	440.753601	879.49265	0.049693	2.1902E-05	1.3294	0.00058594	1.3791	0.00060784	440.7540101977676	17.759	0.3202	17.698	17.472	17.792	-0.060429					20	10	3	0	0	0	0.0042343	3	1733	1726;1733;1745		92.491	29.93	1	145850			12396	8438	6935	6935	15886;15887;15888	15887					0.048083378201340565
GVAPALAPK	9	Unmodified	_GVAPALAPK_					0	0	0		nc|ENSG00000125447|Q9NZ52-3|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;ENSG00000125447|ENST00000537686|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.57867431640625	2	412.255446	822.496338	0.11949	4.9259E-05	-0.26757	-0.00011031	-0.14809	-6.1049E-05	412.2552008500046	29.679	0.78437	29.679	29.441	30.225	0					47	27	3	0	0	0	0.19839	1	5361	5361		21.747	7.165	1	188530			12397	3206	6936	6936	15889	15889					0.07799007593985152
GVAPPRPSL	9	Unmodified	_GVAPPRPSL_					0	0	0		ENST00000497825.5_1_9:130213401-130213527:-|nuORF	ENST00000497825.5_1_9:130213401-130213527:-|nuORF	ENST00000497825.5_1_9:130213401-130213527:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.28179931640625	2	447.263802	892.513051	0.22302	9.975E-05	0.025303	1.1317E-05	0.24832	0.00011107	447.26372179872334	38.42	0.70572	38.511	38.237	38.942	0.090881					39	25	2	0	0	0	0.13898	1	8042	8042		36.127	7.0454	1	309070			12398	11249	6937	6937	15890	15890					0.06249508479936594
GVAPPRPSL	9	Unmodified	_GVAPPRPSL_					0	0	0		ENST00000497825.5_1_9:130213401-130213527:-|nuORF	ENST00000497825.5_1_9:130213401-130213527:-|nuORF	ENST00000497825.5_1_9:130213401-130213527:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.2818298339844	2	447.263802	892.513051	0.3052	0.00013651	-0.13508	-6.0415E-05	0.17013	7.6091E-05	447.263652392266	38.356	0.60634	38.453	38.202	38.808	0.097527					40	21	2	0	0	0	0.074331	1	8016	8016		43.858	7.7313	1	299150			12399	11249	6937	6937	15891	15891					0.06249508479936594
GVARPVTRRRN	11	Unmodified	_GVARPVTRRRN_					0	0	0		ENST00000354181.7_1_15:34629669-34629918:-|nuORF	ENST00000354181.7_1_15:34629669-34629918:-|nuORF	ENST00000354181.7_1_15:34629669-34629918:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8837280273438	2	641.384168	1280.75378	0.27296	0.00017507	-0.3106	-0.00019921	-0.037638	-2.4141E-05	641.3849818814257	93.344	1.7735	93.344	92.641	94.415	0					355	148	3	0	0	0	0.47546	1	25093	25093		1.3295	0.13619	1	570220			12400	9591	6938	6938	15892	15892					0.12463717519881357
GVASSPAISFG	11	Unmodified	_GVASSPAISFG_					0	0	0		nc|ENSG00000185008|Q9HCK4-2|ROBO2;nc|ENSG00000185008|Q9HCK4|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;ENSG00000185008|ENST00000696593|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7742614746094	2	496.756007	991.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.485	1	29.498	28.998	29.998	0.013474								0	0	0	0.30959	1	5276	5276		17.113	2.2746	1				12401	7494	6939	6939	15893	15893					0.001371771722460835
GVATFVLQEEF	11	Unmodified	_GVATFVLQEEF_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8;nc|ENSG00000074603|Q6V1X1-6|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.24456787109375	3	413.880044	1238.6183	0.39151	0.00016204	1.6307	0.00067492	2.0222	0.00083696	413.8806524103907	44.604	0.40437	44.679	44.531	44.935	0.075047					20	14	2	0	0	0	0.33202	1	9861	9861		2.8433	0	1	115610			12402	1023	6940	6940	15894	15894					0.008539600950371096
GVATYTDKLFK	11	Unmodified	_GVATYTDKLFK_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.8958435058594	3	414.895806	1241.66559	0.1144	4.7464E-05	-0.10449	-4.3354E-05	0.0099069	4.1103E-06	414.8957862613519	45.018	1.0918	45.018	44.684	45.776	0					125	39	4	0	0	0	0.064121	4	10030	9985;10030;10084;10147		49.159	39.395	1	7250800			12403	1455	6941	6941	15895;15896;15897;15898	15896					0.054422393660161106
GVATYTDKLFK	11	Unmodified	_GVATYTDKLFK_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.8401489257812	2	621.840071	1241.66559	0.44003	0.00027363	0.041269	2.5662E-05	0.4813	0.00029929	621.8400460009807	45.022	0.98377	45.022	44.71	45.694	0					99	35	4	0	0	0	1.5666E-05	3	9997	9997;10051;10120		150.18	128.64	1	3096100			12404	1455	6941	6941	15899;15900;15901	15899					0.054422393660161106
GVATYTDKLFK	11	Unmodified	_GVATYTDKLFK_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.8402099609375	2	621.840071	1241.66559	0.21291	0.00013239	0.091395	5.6833E-05	0.3043	0.00018923	621.8401229037781	44.704	0.71814	44.772	44.513	45.232	0.068569					81	25	4	0	0	0	2.9385E-06	2	9899	9899;9947		154.04	125.8	1	3636600			12405	1455	6941	6941	15902;15903	15902					0.054422393660161106
GVATYTDKLFK	11	Unmodified	_GVATYTDKLFK_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8958740234375	3	414.895806	1241.66559	0.40178	0.0001667	-0.42266	-0.00017536	-0.020879	-8.6627E-06	414.89564888552906	44.683	1.1656	44.758	44.389	45.554	0.07505					122	42	4	0	0	0	0.076423	3	9917	9870;9917;9966		45.603	36.359	1	7457100			12406	1455	6941	6941	15904;15905;15906	15905					0.054422393660161106
GVATYTDKLFK	11	Unmodified	_GVATYTDKLFK_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.8402709960938	2	621.840071	1241.66559	0.36799	0.00022883	0.019772	1.2295E-05	0.38776	0.00024113	621.8400091806686	44.672	0.94471	44.747	44.449	45.394	0.075047					107	34	5	0	0	0	8.8155E-06	3	9873	9873;9919;9977		146.48	122.69	1	3022700			12407	1455	6941	6941	15907;15908;15909	15907					0.054422393660161106
GVCDVGLPR	9	Unmodified	_GVCDVGLPR_					0	0	0		ENST00000368731.6_1_6:111894795-111894855:-|nuORF	ENST00000368731.6_1_6:111894795-111894855:-|nuORF	ENST00000368731.6_1_6:111894795-111894855:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2788391113281	2	458.23947	914.464386	-0.052777	-2.4184E-05	-3.0271	-0.0013871	-3.0798	-0.0014113	458.2384212861286	29.593	0.17762	29.607	29.536	29.714	0.013474					6	5	2	0	0	0	0.2322	1	5322	5322		20.454	2.3186	1	25473			12408	9768	6942	6942	15910	15910					0.003732718485480291
GVCRLRWA	8	Unmodified	_GVCRLRWA_					0	0	0		ENST00000606645.1_1_1:2477953-2478280:+|nuORF	ENST00000606645.1_1_1:2477953-2478280:+|nuORF	ENST00000606645.1_1_1:2477953-2478280:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7485656738281	2	480.763446	959.51234	0.073999	3.5576E-05	-1.8265	-0.00087809	-1.7525	-0.00084252	480.7635058654954	39.338	0.13718	39.431	39.36	39.497	0.09267					6	4	2	0	0	0	0.33995	1	8268	8268		15.768	0	1	74601			12409	12302	6943	6943	15911	15911					0.030963905592443552
GVDDFFPI	8	Unmodified	_GVDDFFPI_					0	0	0			REV__ENSG00000136021|ENST00000360820|SCYL2	REV__ENSG00000136021|ENST00000360820|SCYL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2426452636719	2	455.221268	908.427984	0.091258	4.1542E-05	0.23079	0.00010506	0.32205	0.0001466	455.2213877756725	28.682	0.73272	28.677	28.411	29.144	-0.0042572					43	25	2	0	0	0	0.33995	1	4999	4999		10.183	2.8942	1	148000	+		12410	15781	6944	6944	15912	15912					-0.029892817765244217
GVDDKFYSK	9	Unmodified	_GVDDKFYSK_					0	0	0		ENST00000481742.1_1_19:36606435-36607215:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB;ENST00000589308.1_1_19:36606815-36612715:+|nuORF;nc|ENSG00000105254|Q99426-2|TBCB	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.7612915039062	2	529.761289	1057.50803	0.43244	0.00022909	-0.56862	-0.00030123	-0.13618	-7.2142E-05	529.7610666834383	25.135	0.60279	25.135	24.872	25.475	0					54	20	4	0	0	0	0.0099976	3	3984	3938;3984;3991		79.427	37.471	1	518610			12411	1959	6945	6945	15913;15914;15915	15914					-0.018428401733444844
GVDDKFYSK	9	Unmodified	_GVDDKFYSK_					0	0	0		ENST00000481742.1_1_19:36606435-36607215:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB;ENST00000589308.1_1_19:36606815-36612715:+|nuORF;nc|ENSG00000105254|Q99426-2|TBCB	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.770751953125	2	529.761289	1057.50803	0.19822	0.00010501	-0.29284	-0.00015513	-0.09462	-5.0126E-05	529.7611938501474	25.251	0.59251	25.195	24.946	25.539	-0.055931					52	20	4	0	0	0	0.066921	1	4024	4024		70.929	35.997	1	456820			12412	1959	6945	6945	15916	15916					-0.018428401733444844
GVDDKFYSK	9	Unmodified	_GVDDKFYSK_					0	0	0		ENST00000481742.1_1_19:36606435-36607215:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB;ENST00000589308.1_1_19:36606815-36612715:+|nuORF;nc|ENSG00000105254|Q99426-2|TBCB	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7706298828125	2	529.761289	1057.50803	0.060683	3.2147E-05	-0.28428	-0.0001506	-0.2236	-0.00011845	529.7611783168209	25.214	0.75005	25.182	24.765	25.515	-0.03141					65	25	5	0	0	0	0.0042709	4	3990	3957;3990;4045;4053		92.201	50.245	1	371870			12413	1959	6945	6945	15917;15918;15919;15920	15918					-0.018428401733444844
GVDKVTPK	8	Unmodified	_GVDKVTPK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5641174316406	2	422.25036	842.486168	-0.26778	-0.00011307	0.88806	0.00037499	0.62028	0.00026191	422.2506535008224	23.163	0.82423	23.163	22.875	23.699	0					41	28	2	0	0	0	0.34353	1	3454	3454		2.0598	0.40713	1	216130	+		12414	16705;23038	6946	6946	15921	15921					0.05862399868772172
GVDPCSLK	8	Unmodified	_GVDPCSLK_					0	0	0		ENST00000528807.1_1_11:6637814-6638385:-|nuORF	ENST00000528807.1_1_11:6637814-6638385:-|nuORF	ENST00000528807.1_1_11:6637814-6638385:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.1742858886719	2	409.707471	817.400389	-0.11239	-4.6046E-05	-0.38649	-0.00015835	-0.49887	-0.00020439	409.70731384661417	16.868	0.2321	16.868	16.749	16.981	0					10	7	2	0	0	0	0.34247	1	1476	1476		8.5933	2.8329	1	27058			12415	11589	6947	6947	15922	15922					-0.01561508308395787
GVDSSIFQNPK	11	Unmodified	_GVDSSIFQNPK_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.3043212890625	2	596.303852	1190.59315	0.31193	0.00018601	0.24716	0.00014738	0.5591	0.00033339	596.3039479575898	42.065	0.9514	42.065	41.809	42.76	0					102	34	4	0	0	0	6.5005E-26	3	9175	9091;9132;9175		222.22	166.98	1	7356800			12416	4135	6948	6948	15923;15924;15925	15925					0.0054790529247839
GVDSSIFQNPK	11	Unmodified	_GVDSSIFQNPK_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.3040771484375	2	596.303852	1190.59315	0.56996	0.00033987	-0.03102	-1.8498E-05	0.53894	0.00032137	596.3038458337107	41.798	0.90882	41.889	41.715	42.623	0.090248					95	35	4	0	0	0	2.7163E-25	3	9072	9024;9072;9124		208.35	153.12	1	9633600			12417	4135	6948	6948	15926;15927;15928	15927					0.0054790529247839
GVDSSIFQNPK	11	Unmodified	_GVDSSIFQNPK_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.3043212890625	2	596.303852	1190.59315	0.68708	0.00040971	0.049317	2.9408E-05	0.7364	0.00043912	596.3038422827065	41.765	0.94062	41.862	41.645	42.586	0.096622					101	35	4	0	0	0	2.7163E-25	3	9000	9000;9043;9087		208.35	153.12	1	10168000			12418	4135	6948	6948	15929;15930;15931	15929					0.0054790529247839
GVDVTENTRKV	11	Unmodified	_GVDVTENTRKV_					0	0	0		nc|ENSG00000163681|Q14BN4-7|SLMAP;ENST00000467901.1_1_3:57743378-57875870:+|nuORF;nc|ENSG00000163681|Q14BN4-6|SLMAP;nc|ENSG00000163681|Q14BN4-2|SLMAP;nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP	nc|ENSG00000163681|Q14BN4-7|SLMAP	nc|ENSG00000163681|Q14BN4-7|SLMAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.9065856933594	3	406.554331	1216.64116	-0.33523	-0.00013629	0.5061	0.00020576	0.17087	6.9469E-05	406.5543969316414	12.377	0.11762	12.28	12.206	12.324	-0.096607					5	3	2	0	0	0	0.33346	1	108	108		0.50596	0.23694	1	9922.2			12419	5719	6949	6949	15932	15932					0.04150979212522543
GVEAAGISHCR	11	Unmodified	_GVEAAGISHCR_					0	0	0			REV__ENST00000472799.1_1_22:24808300-24810588:+|nuORF	REV__ENST00000472799.1_1_22:24808300-24810588:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2799072265625	2	550.26929	1098.52403	0.032942	1.8127E-05	-0.15948	-8.7758E-05	-0.12654	-6.9632E-05	550.269061326264	39.168	1.6034	39.168	38.623	40.226	0					98	57	2	0	0	0	0.19931	1	8551	8551		31.268	7.2478	1	2572200	+		12420	21374	6950	6950	15933	15933					-0.02129457208070562
GVEAAGISHCR	11	Unmodified	_GVEAAGISHCR_					0	0	0			REV__ENST00000472799.1_1_22:24808300-24810588:+|nuORF	REV__ENST00000472799.1_1_22:24808300-24810588:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2796630859375	2	550.26929	1098.52403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.917	1	40.016	39.516	40.516	0.099407								0	0	0	0.21832	1	8458	8458		31.268	2.7815	1		+		12421	21374	6950	6950	15934	15934					-0.02129457208070562
GVEAAKIK	8	Unmodified	_GVEAAKIK_					0	0	0			REV__ENST00000356683.6_2_17:7162048-7162246:+|nuORF	REV__ENST00000356683.6_2_17:7162048-7162246:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.8764343261719	2	408.252903	814.491253	-0.28035	-0.00011446	0.14534	5.9335E-05	-0.13502	-5.5121E-05	408.2528360909548	19.041	0.73465	19.041	18.839	19.574	0					41	25	3	0	0	0	0.344	1	2072	2072		2.5775	0	1	105490	+		12422	20202	6951	6951	15935	15935					0.07658703731374317
GVEAAKIK	8	Unmodified	_GVEAAKIK_					0	0	0			REV__ENST00000356683.6_2_17:7162048-7162246:+|nuORF	REV__ENST00000356683.6_2_17:7162048-7162246:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	408.252903	814.491253	-0.12901	-5.267E-05	0.10396	4.2444E-05	-0.02505	-1.0227E-05	408.25279616102404	19.201	0.59335	19.085	18.812	19.405	-0.11592	0.025796	-1.7358E-05	NaN	2.5775	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74216	+		12423	20202	6951	6951							0.07658703731374317
GVEAAKIK	8	Unmodified	_GVEAAKIK_					0	0	0			REV__ENST00000356683.6_2_17:7162048-7162246:+|nuORF	REV__ENST00000356683.6_2_17:7162048-7162246:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	408.252903	814.491253	-0.13632	-5.5654E-05	0.12113	4.9453E-05	-0.015189	-6.2008E-06	408.2528502951762	19.108	0.6685	19.051	18.875	19.543	-0.056591	-0.0076001	-3.3385E-06	NaN	2.5775	37	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94567	+		12424	20202	6951	6951							0.07658703731374317
GVEELLNK	8	Unmodified	_GVEELLNK_					0	0	0		ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	ENSG00000013364|ENST00000357402|MVP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2406005859375	2	451.2531	900.491647	0.26532	0.00011973	-2.8824	-0.0013007	-2.617	-0.0011809	451.2525113283585	19.998	0.66542	19.882	19.544	20.209	-0.11592					35	22	2	0	0	0	0.4419	1	2480	2480		8.5933	2.3875	1	89817			12425	461	6952	6952	15936	15936					0.03742078660570769
GVEKWTAQ	8	Unmodified	_GVEKWTAQ_					0	0	0			REV__ENST00000525763.5_1_11:33719939-33731456:-|nuORF	REV__ENST00000525763.5_1_11:33719939-33731456:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.756103515625	2	459.737617	917.460681	0.13769	6.3302E-05	0.90687	0.00041692	1.0446	0.00048022	459.73803076615724	32.685	0.61073	32.74	32.618	33.228	0.055309					27	21	2	0	0	0	0.3366	1	6313	6313		7.9102	0	1	157620	+		12426	21954	6953	6953	15937	15937					-0.0013507465367865734
GVEQRDSL	8	Unmodified	_GVEQRDSL_					0	0	0		ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2298583984375	2	452.230156	902.445759	0.057523	2.6013E-05	0.020545	9.2913E-06	0.078068	3.5305E-05	452.2300584478686	19.301	0.97768	19.185	18.891	19.869	-0.11592					110	33	6	0	0	0	0.43302	1	2336	2336		11.64	0	1	1677800			12427	8451	6954	6954	15938	15938					-0.009365665216591879
GVEWNKVRPF	10	Unmodified	_GVEWNKVRPF_					0	0	0			REV__nc|ENSG00000164867|P29474-3|NOS3	REV__nc|ENSG00000164867|P29474-3|NOS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.571533203125	3	411.224257	1230.65094	0.1731	7.1182E-05	-0.53329	-0.0002193	-0.3602	-0.00014812	411.2241421957557	31.896	0.94814	31.937	31.696	32.644	0.040991					94	33	4	0	0	0	0.38027	1	6215	6215		7.1017	3.5147	1	1774900	+		12428	17181	6955	6955	15939	15939					0.04484212008560462
GVFALSSFLNK	11	Unmodified	_GVFALSSFLNK_					0	0	0		nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1;ENST00000477938.5_1_1:219352746-219385067:+|nuORF;ENST00000474379.5_1_1:219347271-219385067:+|nuORF;ENSG00000143353|ENST00000366928|LYPLAL1;ENST00000463964.5_1_1:219347256-219385067:+|nuORF	nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.7877807617188	2	591.829506	1181.64446	0.48402	0.00028646	0.30407	0.00017996	0.78809	0.00046642	592.3313163447045	71.519	0.47778	71.492	71.288	71.765	-0.027275					25	16	2	0	0	0	0.21482	1	18169	18169		44.392	17.169	1	316320			12429	12734	6956	6956	15940	15940					0.06090274057191891
GVFEGHTSK	9	Unmodified	_GVFEGHTSK_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.24053955078125	2	481.240524	960.466495	-0.049808	-2.397E-05	1.267	0.00060974	1.2172	0.00058577	481.24109784250754	15.576	0.93573	15.576	15.072	16.008	0					51	32	2	0	0	0	0.22935	1	1092	1092		19.362	10.769	1	245140			12430	1859	6957	6957	15941	15941					-0.015319761420187206
GVFEGHTSK	9	Unmodified	_GVFEGHTSK_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.24139404296875	2	481.240524	960.466495	0.026118	1.2569E-05	0.27542	0.00013255	0.30154	0.00014511	481.24109480307317	15.542	0.90423	15.477	15.069	15.973	-0.064413					73	30	3	0	0	0	0.075356	1	1069	1069		63.961	29.559	1	280640			12431	1859	6957	6957	15942	15942					-0.015319761420187206
GVFGFPLGR	9	Unmodified	_GVFGFPLGR_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.266357421875	2	475.266345	948.518136	0.18359	8.7254E-05	-0.10276	-4.884E-05	0.080826	3.8414E-05	475.2662941326329	64.746	1.8964	64.746	64.342	66.239	0					185	68	5	0	0	0	0.0041925	6	16086	16043;16086;16135;16182;16228;16274		92.822	64.335	1	10355000			12432	6700	6958	6958	15943;15944;15945;15946;15947;15948	15944					0.04181812342562807
GVFGFPLGR	9	Unmodified	_GVFGFPLGR_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.26654052734375	2	475.266345	948.518136	0.34498	0.00016396	-0.25251	-0.00012001	0.092463	4.3945E-05	475.2662323041231	64.668	1.4534	64.76	64.334	65.788	0.09288					169	53	5	0	0	0	0.0041925	5	16096	16010;16054;16096;16141;16189		92.822	64.335	1	10018000			12433	6700	6958	6958	15949;15950;15951;15952;15953	15951					0.04181812342562807
GVFGFPLGR	9	Unmodified	_GVFGFPLGR_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.26629638671875	2	475.266345	948.518136	0.22043	0.00010476	-0.13005	-6.181E-05	0.090376	4.2953E-05	475.2662775320317	64.785	1.4618	64.775	64.339	65.801	-0.0095367					166	53	5	0	0	0	0.0036555	7	16083	16037;16083;16128;16170;16219;16269;16323		97.075	61.03	1	10481000			12434	6700	6958	6958	15954;15955;15956;15957;15958;15959;15960	15955					0.04181812342562807
GVFKETKQK	9	Unmodified	_GVFKETKQK_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.8092651367188	2	532.808574	1063.60259	-0.001349	-7.1878E-07	0.77577	0.00041334	0.77442	0.00041262	532.8089739560843	13.45	0.33166	13.351	13.16	13.492	-0.099291					16	11	2	0	0	0	0.17555	1	436	436		27.223	11.376	1	112790			12435	2916	6959	6959	15961	15961					0.07333718368658992
GVFKETKQK	9	Unmodified	_GVFKETKQK_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8093872070312	2	532.808574	1063.60259	0.08487	4.522E-05	1.0027	0.00053423	1.0875	0.00057945	532.8089945221551	13.46	0.27347	13.392	13.275	13.549	-0.067496					21	9	3	0	0	0	0.19905	1	441	441		23.79	8.9515	1	110660			12436	2916	6959	6959	15962	15962					0.07333718368658992
GVFKETKQK	9	Unmodified	_GVFKETKQK_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	532.808574	1063.60259	0.15971	8.5095E-05	-0.043073	-2.295E-05	0.11664	6.2145E-05	532.8086093493465	13.4	0.36989	13.4	13.227	13.597	0	0.019012	-0.00078554	NaN	27.223	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84407			12437	2916	6959	6959							0.07333718368658992
GVFLSLIQK	9	Unmodified	_GVFLSLIQK_					0	0	0		nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.8105773925781	2	502.810585	1003.60662	0.24613	0.00012376	0.35074	0.00017635	0.59687	0.00030011	502.81056528642966	61.875	0.98315	61.875	61.569	62.552	0					71	36	3	0	0	0	5.6213E-07	3	15197	15197;15245;15296		158.2	90.122	1	1763100			12438	798	6960	6960	15963;15964;15965	15963					0.10495807862378115
GVFLSLIQK	9	Unmodified	_GVFLSLIQK_					0	0	0		nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.81060791015625	2	502.810585	1003.60662	-0.086701	-4.3594E-05	0.66044	0.00033208	0.57374	0.00028848	502.81074706200116	61.763	0.96348	61.86	61.507	62.471	0.096985					72	34	3	0	0	0	7.827E-05	3	15168	15168;15219;15273		144.35	80.114	1	1689300			12439	798	6960	6960	15966;15967;15968	15966					0.10495807862378115
GVFLSLIQK	9	Unmodified	_GVFLSLIQK_					0	0	0		nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.810791015625	2	502.810585	1003.60662	0.042559	2.1399E-05	0.48666	0.0002447	0.52922	0.0002661	502.81068566165476	61.836	1.0416	61.828	61.528	62.57	-0.0085526					76	37	3	0	0	0	4.3382E-05	2	15188	15188;15242		149.99	92.523	1	1681900			12440	798	6960	6960	15969;15970	15969					0.10495807862378115
GVFSSFMTPEK	11	Oxidation (M)	_GVFSSFM(Oxidation (M))TPEK_		GVFSSFM(1)TPEK		GVFSSFM(73)TPEK	0	0	1		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.7960815429688	2	623.294639	1244.57472	0.060304	3.7587E-05	-0.32862	-0.00020483	-0.26832	-0.00016724	623.7958770282875	49.017	0.49079	49.062	48.851	49.342	0.044891					24	17	2	0	0	0	0.0083345	1	11277	11277		73.196	38.975	1	300970			12441	3655	6961	6961	15971	15971		463			-0.03777972673765362
GVFSSFMTPEK	11	Oxidation (M)	_GVFSSFM(Oxidation (M))TPEK_					0	0	1		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	623.294639	1244.57472	0.42377	0.00026414	-1.1207	-0.00069851	-0.69691	-0.00043438	623.2944405460682	49.013	0.46957	49.013	48.798	49.267	0	0.0019014	-0.00060912	NaN	73.196	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262590			12442	3655	6961	6961				463			-0.03777972673765362
GVFSSFMTPEK	11	Oxidation (M)	_GVFSSFM(Oxidation (M))TPEK_					0	0	1		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	623.294639	1244.57472	0.037035	2.3084E-05	-0.28576	-0.00017811	-0.24872	-0.00015503	623.2945049617241	48.926	0.41238	48.958	48.828	49.24	0.032043	-0.052586	0.00043169	NaN	73.196	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294710			12443	3655	6961	6961				463			-0.03777972673765362
GVFVSTSWVI	10	Unmodified	_GVFVSTSWVI_					0	0	0		ENSG00000283526|ENST00000636672|PRRT1B	ENSG00000283526|ENST00000636672|PRRT1B	ENSG00000283526|ENST00000636672|PRRT1B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8419189453125	2	547.797675	1093.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.234	1	12.166	11.666	12.666	-0.06806								0	0	0	0.38126	1	65	65		1.6526	0	1				12444	8761	6962	6962	15972	15972					0.03774913620077314
GVGANRRL	8	Unmodified	_GVGANRRL_					0	0	0		ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.75115966796875	2	421.751393	841.488233	0.070738	2.9834E-05	-0.15315	-6.459E-05	-0.08241	-3.4756E-05	421.7513014375822	67.968	2.1611	68.046	67.515	69.676	0.078041					116	77	3	0	0	0	0.45169	1	17016	17016		5.2307	0.90143	1	550770			12445	302	6963	6963	15973	15973					0.06114873397223164
GVGEVLHVK	9	Unmodified	_GVGEVLHVK_					0	0	0		ENSG00000213676|ENST00000375203|ATF6B;nc|ENSG00000213676|Q99941-2|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	ENSG00000213676|ENST00000375203|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.27685546875	2	469.276909	936.539266	0.1261	5.9175E-05	-0.073175	-3.4339E-05	0.052923	2.4836E-05	469.2767503766978	30.294	0.67839	30.294	29.97	30.648	0					38	23	2	0	0	0	0.0079761	1	5532	5532		82.529	54.901	1	360540			12446	8359	6964	6964	15974	15974					0.06845777651415119
GVGEVLHVK	9	Unmodified	_GVGEVLHVK_					0	0	0		ENSG00000213676|ENST00000375203|ATF6B;nc|ENSG00000213676|Q99941-2|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	ENSG00000213676|ENST00000375203|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.27679443359375	2	469.276909	936.539266	0.1809	8.4891E-05	-0.082442	-3.8688E-05	0.098455	4.6203E-05	469.27671144937915	30.291	0.61782	30.319	30.048	30.665	0.027946					37	21	2	0	0	0	0.0042138	1	5523	5523		92.653	58.252	1	294730			12447	8359	6964	6964	15975	15975					0.06845777651415119
GVGEVLHVK	9	Unmodified	_GVGEVLHVK_					0	0	0		ENSG00000213676|ENST00000375203|ATF6B;nc|ENSG00000213676|Q99941-2|ATF6B;ENST00000495579.5_1_6:32088425-32095984:-|nuORF	ENSG00000213676|ENST00000375203|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.2768859863281	2	469.276909	936.539266	-0.08876	-4.1653E-05	0.12322	5.7824E-05	0.03446	1.6171E-05	469.27681571471453	30.312	0.61939	30.339	30.019	30.638	0.027157					45	21	3	0	0	0	0.0042138	1	5520	5520		92.653	58.252	1	245290			12448	8359	6964	6964	15976	15976					0.06845777651415119
GVGGAGVVVL	10	Unmodified	_GVGGAGVVVL_					0	0	0			REV__nc|ENSG00000174775|P01112-2|HRAS	REV__nc|ENSG00000174775|P01112-2|HRAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5505065917969	2	414.252903	826.491253	-0.24781	-0.00010266	0.6743	0.00027933	0.42648	0.00017667	414.25313707522116	19.107	0.58372	19.107	18.71	19.294	0					26	20	2	0	0	0	0.3198	1	2166	2166		1.8442	0	1	29826	+		12449	15632	6965	6965	15977	15977					0.07106703731381003
GVGKFKGK	8	Unmodified	_GVGKFKGK_					0	0	0			REV__ENSG00000100697|ENST00000343455|DICER1	REV__ENSG00000100697|ENST00000343455|DICER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2364807128906	2	410.755613	819.496673	0.36293	0.00014908	-0.79416	-0.00032621	-0.43123	-0.00017713	410.7552306942267	34.052	0.30949	34.118	33.955	34.264	0.06636					15	10	2	0	0	0	0.34247	1	6641	6641		8.5933	2.8329	1	39546	+		12450	14224	6966	6966	15978	15978					0.07970427313853179
GVGKFKGK	8	Unmodified	_GVGKFKGK_					0	0	0			REV__ENSG00000100697|ENST00000343455|DICER1	REV__ENSG00000100697|ENST00000343455|DICER1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	410.755613	819.496673	-0.0719	-2.9533E-05	-0.37173	-0.00015269	-0.44363	-0.00018222	410.75547899851466	34.211	0.34376	34.211	34.074	34.418	0	0.046121	0.000199	NaN	8.5933	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61346	+		12451	14224	6966	6966							0.07970427313853179
GVGLQLNKWLR	11	Unmodified	_GVGLQLNKWLR_					0	0	0			REV__MCTP1|p.V707Lfs*18|1|0.29|ENSG00000175471|chr5:94871336-94871336|T/-|frameshift_variant	REV__MCTP1|p.V707Lfs*18|1|0.29|ENSG00000175471|chr5:94871336-94871336|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8827514648438	2	642.382771	1282.75099	0.19711	0.00012662	2.1383	0.0013736	2.3354	0.0015002	642.3840155018896	95.063	0.067474	95.063	95.035	95.103	0					8	5	2	0	0	0	0.33318	1	25380	25380		1.3295	0.25807	1	59986	+		12452	17893	6967	6967	15979	15979					0.12092449342367217
GVGLQLNKWLR	11	Unmodified	_GVGLQLNKWLR_					0	0	0			REV__MCTP1|p.V707Lfs*18|1|0.29|ENSG00000175471|chr5:94871336-94871336|T/-|frameshift_variant	REV__MCTP1|p.V707Lfs*18|1|0.29|ENSG00000175471|chr5:94871336-94871336|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.88232421875	2	642.382771	1282.75099	0.43711	0.00028079	1.398	0.00089805	1.8351	0.0011788	642.3836839393299	92.78	0.27583	92.869	92.712	92.988	0.089195					29	22	2	0	0	0	0.33255	1	24693	24693		2.9952	1.5133	1	125550	+		12453	17893	6967	6967	15980	15980					0.12092449342367217
GVGLYFTL	8	Unmodified	_GVGLYFTL_					0	0	0			REV__ENST00000528489.1_1_11:58345506-58345659:-|nuORF	REV__ENST00000528489.1_1_11:58345506-58345659:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.2519226074219	2	435.242004	868.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.799	1	71.799	71.299	72.299	0								0	0	0	0.36169	1	18270	18270		9.3474	3.587	1		+		12454	21989	6968	6968	15981	15981					0.0299589898281738
GVGSLVINF	9	Unmodified	_GVGSLVINF_					0	0	0			REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|35|2|anti-sense	REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|35|2|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.2457580566406	2	453.258185	904.501818	-0.20083	-9.1028E-05	0.45601	0.00020669	0.25518	0.00011566	453.2583989650242	39.232	0.58114	39.232	38.958	39.54	0					29	20	2	0	0	0	0.20344	1	8211	8211		23.148	3.8914	1	128030	+		12455	22693	6969	6969	15982	15982					0.04574686385797122
GVGTSKEK	8	Unmodified	_GVGTSKEK_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2312927246094	2	403.224342	804.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.137	1	19.137	18.637	19.637	0								0	0	0	0.37724	1	2143	2143		2.3027	0.4585	1				12456	560	6970	6970	15983	15983					0.024092364550028833
GVHGGLINK	9	Unmodified	_GVHGGLINK_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.76092529296875	2	447.761426	893.5083	0.2152	9.6358E-05	-0.68684	-0.00030754	-0.47164	-0.00021118	447.7610266754884	17.127	0.70295	17.127	16.895	17.598	0					55	24	3	0	0	0	0.14099	1	1519	1519		42.095	0	1	491960			12457	2191	6971	6971	15984	15984					0.057286243371777346
GVHGGLINK	9	Unmodified	_GVHGGLINK_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	447.761426	893.5083	0.30559	0.00013683	-0.87409	-0.00039139	-0.5685	-0.00025455	447.76094425566987	17.202	0.78904	17.142	16.887	17.676	-0.060431	0.0074096	-7.4581E-05	NaN	67.344	63	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437230			12458	2191	6971	6971							0.057286243371777346
GVHGGTLNK	9	Unmodified	_GVHGGTLNK_					0	0	0		ENST00000497060.1_1_3:149683956-149686189:-|nuORF;ENST00000239940.11_1_3:149683956-149684166:-|nuORF;nc|ENSG00000070087|P35080-2|PFN2	ENST00000497060.1_1_3:149683956-149686189:-|nuORF	ENST00000497060.1_1_3:149683956-149686189:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7433166503906	2	441.743234	881.471915	-0.17226	-7.6095E-05	0.30398	0.00013428	0.13171	5.8184E-05	441.7432707901357	12.865	0.3386	12.865	12.751	13.09	0					25	11	3	0	0	0	0.13748	1	262	262		32.786	20.254	1	252330			12459	8883	6972	6972	15985	15985					0.02643747440470179
GVHGGTLNK	9	Unmodified	_GVHGGTLNK_					0	0	0		ENST00000497060.1_1_3:149683956-149686189:-|nuORF;ENST00000239940.11_1_3:149683956-149684166:-|nuORF;nc|ENSG00000070087|P35080-2|PFN2	ENST00000497060.1_1_3:149683956-149686189:-|nuORF	ENST00000497060.1_1_3:149683956-149686189:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7433166503906	2	441.743234	881.471915	-0.19935	-8.806E-05	0.31746	0.00014024	0.11811	5.2175E-05	441.74333749090783	12.923	0.42381	12.824	12.673	13.097	-0.099291					32	14	3	0	0	0	0.13748	1	277	277		32.786	15.843	1	255290			12460	8883	6972	6972	15986	15986					0.02643747440470179
GVHGGTLNK	9	Unmodified	_GVHGGTLNK_					0	0	0		ENST00000497060.1_1_3:149683956-149686189:-|nuORF;ENST00000239940.11_1_3:149683956-149684166:-|nuORF;nc|ENSG00000070087|P35080-2|PFN2	ENST00000497060.1_1_3:149683956-149686189:-|nuORF	ENST00000497060.1_1_3:149683956-149686189:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.74322509765625	2	441.743234	881.471915	-0.23181	-0.0001024	0.21122	9.3306E-05	-0.020587	-9.0944E-06	441.7432975027822	12.904	0.28746	12.836	12.734	13.022	-0.067496					22	9	3	0	0	0	0.14786	1	275	275		31.268	23.358	1	224390			12461	8883	6972	6972	15987	15987					0.02643747440470179
GVHGPEGFHYK	11	Unmodified	_GVHGPEGFHYK_					0	0	0		ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5699462890625	3	409.868362	1226.58326	-0.20329	-8.3322E-05	0.97737	0.00040059	0.77408	0.00031727	409.8687423583865	25.708	0.54762	25.708	25.328	25.875	0					34	18	3	0	0	0	0.32912	1	4095	4095		11.631	7.1025	1	160290			12462	704	6973	6973	15988	15988					-0.02097237922248496
GVHGPEGFHYK	11	Unmodified	_GVHGPEGFHYK_					0	0	0		ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5704650878906	3	409.868362	1226.58326	-0.18146	-7.4376E-05	0.43832	0.00017965	0.25686	0.00010528	409.86843538293203	25.742	0.4551	25.704	25.358	25.813	-0.038671					33	15	3	0	0	0	0.33056	1	4156	4156		8.7518	4.5623	1	140570			12463	704	6973	6973	15989	15989					-0.02097237922248496
GVHGPSRV	8	Unmodified	_GVHGPSRV_					0	0	0		ENSG00000148840|ENST00000278070|PPRC1;nc|ENSG00000148840|Q5VV67-2|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.72467041015625	2	404.724844	807.435135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.234	1	14.234	13.734	14.734	0								0	0	0	0.37595	1	664	664		2.8892	0.58649	1				12464	4831	6974	6974	15990	15990					0.023714956145681754
GVHHHTWLTF	10	Unmodified	_GVHHHTWLTF_					0	0	0		chr19:6586405-6586581|130|62.98|0.04|10.47|-|0|TE_info:AluJr,AluJr_dup76409,Alu,SINE,donor,+,6586581,6586803|CD70,None|2	chr19:6586405-6586581|130|62.98|0.04|10.47|-|0|TE_info:AluJr,AluJr_dup76409,Alu,SINE,donor,+,6586581,6586803|CD70,None|2	chr19:6586405-6586581|130|62.98|0.04|10.47|-|0|TE_info:AluJr,AluJr_dup76409,Alu,SINE,donor,+,6586581,6586803|CD70,None|2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2096252441406	3	412.208718	1233.60433	0.20344	8.386E-05	0.83197	0.00034295	1.0354	0.00042681	412.20940410977414	45.757	1.9324	45.757	44.771	46.703	0					140	70	4	0	0	0	0.37925	1	10293	10293		3.8763	1.1411	1	644170			12465	145	6975	6975	15991	15991					-0.0031322782274401106
GVHHHTWLTF	10	Unmodified	_GVHHHTWLTF_					0	0	0		chr19:6586405-6586581|130|62.98|0.04|10.47|-|0|TE_info:AluJr,AluJr_dup76409,Alu,SINE,donor,+,6586581,6586803|CD70,None|2	chr19:6586405-6586581|130|62.98|0.04|10.47|-|0|TE_info:AluJr,AluJr_dup76409,Alu,SINE,donor,+,6586581,6586803|CD70,None|2	chr19:6586405-6586581|130|62.98|0.04|10.47|-|0|TE_info:AluJr,AluJr_dup76409,Alu,SINE,donor,+,6586581,6586803|CD70,None|2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2095947265625	3	412.208718	1233.60433	0.32605	0.0001344	0.88654	0.00036544	1.2126	0.00049984	412.2094216905257	45.608	2.0935	45.668	44.73	46.824	0.059834					159	75	4	0	0	0	0.39782	1	10174	10174		3.8763	3.8763	1	927580			12466	145	6975	6975	15992	15992					-0.0031322782274401106
GVHHHTWLTF	10	Unmodified	_GVHHHTWLTF_					0	0	0		chr19:6586405-6586581|130|62.98|0.04|10.47|-|0|TE_info:AluJr,AluJr_dup76409,Alu,SINE,donor,+,6586581,6586803|CD70,None|2	chr19:6586405-6586581|130|62.98|0.04|10.47|-|0|TE_info:AluJr,AluJr_dup76409,Alu,SINE,donor,+,6586581,6586803|CD70,None|2	chr19:6586405-6586581|130|62.98|0.04|10.47|-|0|TE_info:AluJr,AluJr_dup76409,Alu,SINE,donor,+,6586581,6586803|CD70,None|2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2094421386719	3	412.208718	1233.60433	0.29548	0.0001218	0.87726	0.00036161	1.1727	0.00048341	412.20938065911	45.559	1.8168	45.624	44.825	46.642	0.065048					145	66	4	0	0	0	0.35558	3	10174	10125;10174;10222		6.6304	3.8952	1	645030			12467	145	6975	6975	15993;15994;15995	15994					-0.0031322782274401106
GVHHHTWLTF	10	Unmodified	_GVHHHTWLTF_					0	0	0		chr19:6586405-6586581|130|62.98|0.04|10.47|-|0|TE_info:AluJr,AluJr_dup76409,Alu,SINE,donor,+,6586581,6586803|CD70,None|2	chr19:6586405-6586581|130|62.98|0.04|10.47|-|0|TE_info:AluJr,AluJr_dup76409,Alu,SINE,donor,+,6586581,6586803|CD70,None|2	chr19:6586405-6586581|130|62.98|0.04|10.47|-|0|TE_info:AluJr,AluJr_dup76409,Alu,SINE,donor,+,6586581,6586803|CD70,None|2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	412.208718	1233.60433	0.32605	0.0001344	0.88654	0.00036544	1.2126	0.00049984	412.2094216905257	45.608	2.0935	45.668	44.73	46.824	0.059834	-0.015033	2.273E-05	NaN	6.6304	159	75	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	927580			12468	145	6975	6975							-0.0031322782274401106
GVHQSRIHRQ	10	Unmodified	_GVHQSRIHRQ_					0	0	0			REV__nc|ENSG00000085276|Q03112-5|MECOM;REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.333740234375	2	609.334144	1216.65374	0.264	0.00016086	-0.91775	-0.00055922	-0.65375	-0.00039835	609.3333256679243	26.531	0.4052	26.531	26.296	26.701	0					28	13	3	0	0	0	0.39009	1	4401	4401		5.2969	0	1	145930	+		12469	13957;16129	6976	6976	15996	15996					0.054074801860679145
GVHQSRIHRQ	10	Unmodified	_GVHQSRIHRQ_					0	0	0			REV__nc|ENSG00000085276|Q03112-5|MECOM;REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	REV__nc|ENSG00000142611|Q9HAZ2-4|PRDM16	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	609.334144	1216.65374	0.264	0.00016086	-0.91775	-0.00055922	-0.65375	-0.00039835	609.3333256679243	26.531	0.4052	26.531	26.296	26.701	0	0.028613	9.0584E-05	NaN	5.2969	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145930	+		12470	13957;16129	6976	6976							0.054074801860679145
GVHVVSRALW	10	Unmodified	_GVHVVSRALW_					0	0	0		ENSG00000188396|ENST00000339355|DYNLT4	ENSG00000188396|ENST00000339355|DYNLT4	ENSG00000188396|ENST00000339355|DYNLT4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3221435546875	2	562.322183	1122.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.82	1	117.8	117.3	118.3	-0.024147								0	0	0	0.38187	1	30481	30481		1.3295	0.63916	1				12471	7749	6977	6977	15997	15997					0.07340246699709496
GVIAAVLEFLF	11	Unmodified	_GVIAAVLEFLF_					0	0	0			REV__TSPAN6|p.V103F|1|0.24|ENSG00000000003|chrX:100635222-100635222|C/A|missense_variant	REV__TSPAN6|p.V103F|1|0.24|ENSG00000000003|chrX:100635222-100635222|C/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8447265625	2	589.844625	1177.6747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.268	1	91.359	90.859	91.859	0.090668								0	0	0	0.35922	1	24218	24218		6.2058	0	1		+		12472	23344	6978	6978	15998	15998					0.09296632722362119
GVIDLIFEK	9	Unmodified	_GVIDLIFEK_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3003540039062	2	517.30005	1032.58555	0.40949	0.00021183	0.11807	6.1077E-05	0.52756	0.00027291	517.3003119955988	71.333	2.8025	71.333	70.963	73.766	0					239	101	5	0	0	0	4.984E-07	4	18102	18055;18102;18147;18190		160.69	44.998	1	38708000			12473	2591	6979	6979	15999;16000;16001;16002	16000					0.07055797762859584
GVIDLIFEK	9	Unmodified	_GVIDLIFEK_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.30029296875	2	517.30005	1032.58555	0.29434	0.00015226	0.19876	0.00010282	0.4931	0.00025508	517.3003460719463	71.281	2.8004	71.342	70.955	73.756	0.060776					246	101	6	0	0	0	4.984E-07	4	18078	18033;18078;18127;18171		160.69	44.998	1	44711000			12474	2591	6979	6979	16003;16004;16005;16006	16004					0.07055797762859584
GVIDLIFEK	9	Unmodified	_GVIDLIFEK_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.300537109375	2	517.30005	1032.58555	0.36336	0.00018797	0.17354	8.9772E-05	0.5369	0.00027774	517.3003544736742	71.375	2.8035	71.348	70.997	73.8	-0.026718					230	101	5	0	0	0	4.984E-07	4	18114	18068;18114;18157;18246		160.69	44.998	1	40098000			12475	2591	6979	6979	16007;16008;16009;16010	16008					0.07055797762859584
GVIDLVFEK	9	Unmodified	_GVIDLVFEK_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.83203125	2	510.292225	1018.5699	0.15546	7.9329E-05	0.63216	0.00032259	0.78762	0.00040191	510.29237403367586	64.94	0.93594	65.029	64.742	65.677	0.088882					85	34	4	0	0	0	0.12056	1	16101	16101		51.415	11.466	1	2382700			12476	1038	6980	6980	16011	16011					0.061355112458159056
GVIDLVFEK	9	Unmodified	_GVIDLVFEK_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	510.292225	1018.5699	-0.022188	-1.1322E-05	0.83831	0.00042778	0.81612	0.00041646	510.29244916982384	65.042	1.0292	65.031	64.721	65.75	-0.011337	0.0084766	0.00013674	NaN	43.982	80	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2435100			12477	1038	6980	6980							0.061355112458159056
GVIGGSKPK	9	Unmodified	_GVIGGSKPK_					0	0	0		ENSG00000125618|ENST00000429538|PAX8;nc|ENSG00000125618|Q06710-2|PAX8;nc|ENSG00000196092|Q02548-5|PAX5;nc|ENSG00000196092|Q02548-4|PAX5;nc|ENSG00000075891|Q02962-2|PAX2;nc|ENSG00000075891|Q02962|PAX2;nc|ENSG00000125618|Q06710-3|PAX8;nc|ENSG00000075891|Q02962-4|PAX2;ENSG00000075891|ENST00000355243|PAX2;ENSG00000196092|ENST00000358127|PAX5;nc|ENSG00000125618|Q06710-5|PAX8;nc|ENSG00000196092|Q02548-2|PAX5;nc|ENSG00000196092|Q02548-6|PAX5;PAX2|p.P146Rfs*35|1|0.05|ENSG00000075891|chr10:100779523-100779524|-/G|frameshift_variant;nc|ENSG00000196092|Q02548-7|PAX5;nc|ENSG00000196092|Q02548-3|PAX5;nc|ENSG00000125618|Q06710-4|PAX8;nc|ENSG00000196092|Q02548-9|PAX5;nc|ENSG00000196092|Q02548-11|PAX5;nc|ENSG00000196092|Q02548-8|PAX5	ENSG00000125618|ENST00000429538|PAX8	ENSG00000125618|ENST00000429538|PAX8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7580871582031	2	421.758352	841.502152	-0.37227	-0.00015701	0.058114	2.451E-05	-0.31415	-0.0001325	421.7582568180078	13.623	0.53979	13.623	13.484	14.024	0					48	18	3	0	0	0	0.074552	1	470	470		43.772	9.67	1	316990			12478	3217	6981	6981	16012	16012					0.07506106105665822
GVIGGSKPK	9	Unmodified	_GVIGGSKPK_					0	0	0		ENSG00000125618|ENST00000429538|PAX8;nc|ENSG00000125618|Q06710-2|PAX8;nc|ENSG00000196092|Q02548-5|PAX5;nc|ENSG00000196092|Q02548-4|PAX5;nc|ENSG00000075891|Q02962-2|PAX2;nc|ENSG00000075891|Q02962|PAX2;nc|ENSG00000125618|Q06710-3|PAX8;nc|ENSG00000075891|Q02962-4|PAX2;ENSG00000075891|ENST00000355243|PAX2;ENSG00000196092|ENST00000358127|PAX5;nc|ENSG00000125618|Q06710-5|PAX8;nc|ENSG00000196092|Q02548-2|PAX5;nc|ENSG00000196092|Q02548-6|PAX5;PAX2|p.P146Rfs*35|1|0.05|ENSG00000075891|chr10:100779523-100779524|-/G|frameshift_variant;nc|ENSG00000196092|Q02548-7|PAX5;nc|ENSG00000196092|Q02548-3|PAX5;nc|ENSG00000125618|Q06710-4|PAX8;nc|ENSG00000196092|Q02548-9|PAX5;nc|ENSG00000196092|Q02548-11|PAX5;nc|ENSG00000196092|Q02548-8|PAX5	ENSG00000125618|ENST00000429538|PAX8	ENSG00000125618|ENST00000429538|PAX8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.75811767578125	2	421.758352	841.502152	-0.37072	-0.00015636	0.11417	4.8152E-05	-0.25655	-0.0001082	421.758240935574	13.689	0.64334	13.59	13.441	14.084	-0.099291					53	22	3	0	0	0	0.058995	1	494	494		49.554	7.4597	1	328220			12479	3217	6981	6981	16013	16013					0.07506106105665822
GVIGGSKPK	9	Unmodified	_GVIGGSKPK_					0	0	0		ENSG00000125618|ENST00000429538|PAX8;nc|ENSG00000125618|Q06710-2|PAX8;nc|ENSG00000196092|Q02548-5|PAX5;nc|ENSG00000196092|Q02548-4|PAX5;nc|ENSG00000075891|Q02962-2|PAX2;nc|ENSG00000075891|Q02962|PAX2;nc|ENSG00000125618|Q06710-3|PAX8;nc|ENSG00000075891|Q02962-4|PAX2;ENSG00000075891|ENST00000355243|PAX2;ENSG00000196092|ENST00000358127|PAX5;nc|ENSG00000125618|Q06710-5|PAX8;nc|ENSG00000196092|Q02548-2|PAX5;nc|ENSG00000196092|Q02548-6|PAX5;PAX2|p.P146Rfs*35|1|0.05|ENSG00000075891|chr10:100779523-100779524|-/G|frameshift_variant;nc|ENSG00000196092|Q02548-7|PAX5;nc|ENSG00000196092|Q02548-3|PAX5;nc|ENSG00000125618|Q06710-4|PAX8;nc|ENSG00000196092|Q02548-9|PAX5;nc|ENSG00000196092|Q02548-11|PAX5;nc|ENSG00000196092|Q02548-8|PAX5	ENSG00000125618|ENST00000429538|PAX8	ENSG00000125618|ENST00000429538|PAX8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.75811767578125	2	421.758352	841.502152	-0.32439	-0.00013681	0.11997	5.0596E-05	-0.20442	-8.6216E-05	421.75828051876795	13.712	0.54272	13.646	13.494	14.037	-0.066068					43	18	3	0	0	0	0.05341	1	503	503		51.63	11.672	1	318130			12480	3217	6981	6981	16014	16014					0.07506106105665822
GVIGLLEPMKK	11	Oxidation (M)	_GVIGLLEPM(Oxidation (M))KK_		GVIGLLEPM(1)KK		GVIGLLEPM(63)KK	0	0	1		ENST00000429051.1_1_1:28858469-28862138:+|nuORF;ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1	ENST00000429051.1_1_1:28858469-28862138:+|nuORF	ENST00000429051.1_1_1:28858469-28862138:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8551025390625	2	600.854667	1199.69478	0.18044	0.00010842	0.16632	9.9934E-05	0.34676	0.00020835	600.8547295764341	42.817	0.77726	42.909	42.527	43.305	0.091362					52	28	2	0	0	0	0.015465	1	9368	9368		63.227	22.988	1	457800			12481	7170	6982	6982	16015	16015		800			0.10292060390656843
GVIGLLEPMKK	11	Oxidation (M)	_GVIGLLEPM(Oxidation (M))KK_					0	0	1		ENST00000429051.1_1_1:28858469-28862138:+|nuORF;ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1	ENST00000429051.1_1_1:28858469-28862138:+|nuORF	ENST00000429051.1_1_1:28858469-28862138:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	600.854667	1199.69478	0.46013	0.00027647	0.074594	4.482E-05	0.53473	0.00032129	600.8546049995324	43.069	0.84278	43.069	42.652	43.494	0	0.10036	4.1667E-06	NaN	63.227	48	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	486660			12482	7170	6982	6982				800			0.10292060390656843
GVIGQDGLLFK	11	Unmodified	_GVIGQDGLLFK_					0	0	0		ENST00000465860.5_1_9:37781981-37784738:-|nuORF;ENSG00000107371|ENST00000327304|EXOSC3	ENST00000465860.5_1_9:37781981-37784738:-|nuORF	ENST00000465860.5_1_9:37781981-37784738:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.82958984375	2	573.829506	1145.64446	0.013273	7.6166E-06	-0.51831	-0.00029742	-0.50503	-0.0002898	573.8291440256321	59.665	0.68193	59.665	59.353	60.035	0					59	23	3	0	0	0	4.7522E-09	2	14526	14526;14576		150.62	108.66	1	2680500			12483	2123	6983	6983	16016;16017	16016					0.07746274057171831
GVIGQDGLLFK	11	Unmodified	_GVIGQDGLLFK_					0	0	0		ENST00000465860.5_1_9:37781981-37784738:-|nuORF;ENSG00000107371|ENST00000327304|EXOSC3	ENST00000465860.5_1_9:37781981-37784738:-|nuORF	ENST00000465860.5_1_9:37781981-37784738:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8294067382812	2	573.829506	1145.64446	0.17393	9.9808E-05	-0.55771	-0.00032003	-0.38378	-0.00022022	573.8291028300285	59.518	0.66536	59.613	59.325	59.99	0.095093					74	23	4	0	0	0	4.1061E-13	2	14488	14488;14539		174.48	124.93	1	2935600			12484	2123	6983	6983	16018;16019	16018					0.07746274057171831
GVIGQDGLLFK	11	Unmodified	_GVIGQDGLLFK_					0	0	0		ENST00000465860.5_1_9:37781981-37784738:-|nuORF;ENSG00000107371|ENST00000327304|EXOSC3	ENST00000465860.5_1_9:37781981-37784738:-|nuORF	ENST00000465860.5_1_9:37781981-37784738:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.8294677734375	2	573.829506	1145.64446	0.33343	0.00019133	-0.67078	-0.00038491	-0.33734	-0.00019358	573.8289973109047	59.628	0.68347	59.617	59.343	60.026	-0.011486					68	23	4	0	0	0	4.1061E-13	2	14517	14517;14567		174.48	124.93	1	2797900			12485	2123	6983	6983	16020;16021	16020					0.07746274057171831
GVIKAVDKK	9	Unmodified	_GVIKAVDKK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF;ENST00000443590.1_1_2:107313789-107313948:-|nuORF;ENST00000419025.1_1_3:183744159-183744318:-|nuORF;ENST00000559385.1_1_15:53229359-53229566:-|nuORF	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.264892578125	2	479.30821	956.601866	-0.081579	-3.9101E-05	0.31669	0.00015179	0.23511	0.00011269	479.3082400974048	14.274	0.2588	14.169	14.049	14.308	-0.10466					14	8	2	0	0	0	0.25612	1	669	669		8.1555	8.1555	1	75700			12486	5239	6984	6984	16022	16022					0.12182923719603878
GVIKFQLGPS	10	Unmodified	_GVIKFQLGPS_					0	0	0		ENST00000458667.1_1_Y:19688699-19691317:-|nuORF	ENST00000458667.1_1_Y:19688699-19691317:-|nuORF	ENST00000458667.1_1_Y:19688699-19691317:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8187866210938	2	523.305667	1044.59678	0.22311	0.00011675	1.4979	0.00078387	1.721	0.00090062	523.3062617186199	39.868	0.5104	39.868	39.54	40.05	0					35	18	3	0	0	0	0.29589	1	8476	8476		17.113	0	1	233930			12487	10712	6985	6985	16023	16023					0.0762661985700106
GVIKFQLGPS	10	Unmodified	_GVIKFQLGPS_					0	0	0		ENST00000458667.1_1_Y:19688699-19691317:-|nuORF	ENST00000458667.1_1_Y:19688699-19691317:-|nuORF	ENST00000458667.1_1_Y:19688699-19691317:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8187866210938	2	523.305667	1044.59678	0.43458	0.00022742	0.65433	0.00034242	1.0889	0.00056983	523.3058098029853	39.621	0.52101	39.721	39.347	39.868	0.099407					32	18	3	0	0	0	0.31143	1	8366	8366		17.113	0	1	270900			12488	10712	6985	6985	16024	16024					0.0762661985700106
GVILELNGVFK	11	Unmodified	_GVILELNGVFK_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.2651977539062	2	594.852981	1187.69141	0.52223	0.00031065	-1.4336	-0.00085281	-0.91141	-0.00054215	594.8518479218941	72.771	0.40825	72.825	72.601	73.01	0.053833					25	14	2	0	0	0	0.32596	1	18569	18569		15.739	3.498	1	161400	+		12489	18519	6986	6986	16025	16025					0.10507133608325603
GVINNVLAT	9	Unmodified	_GVINNVLAT_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.26910400390625	2	450.761092	899.507631	0.21678	9.7714E-05	-0.18569	-8.3704E-05	0.03108	1.401E-05	450.7612485312961	30.681	0.28176	30.681	30.499	30.781	0					14	9	2	0	0	0	0.23783	1	5651	5651		12.532	0.89125	1	97747			12490	8126	6987	6987	16026	16026					0.053857848974644185
GVIPYFPYSK	10	Unmodified	_GVIPYFPYSK_					0	0	0		nc|ENSG00000141127|O60256-3|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2;nc|ENSG00000141127|O60256-4|PRPSAP2;nc|ENSG00000161542|Q14558|PRPSAP1;ENSG00000161542|ENST00000446526|PRPSAP1	nc|ENSG00000141127|O60256-3|PRPSAP2	nc|ENSG00000141127|O60256-3|PRPSAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.814208984375	2	585.813325	1169.6121	0.37104	0.00021736	1.0812	0.00063341	1.4523	0.00085077	585.8142938990126	62.768	1.2161	62.768	62.341	63.557	0					135	44	4	0	0	0	0.13784	2	15496	15446;15496		40.239	17.503	1	13784000			12491	4357	6988	6988	16027;16028	16028					0.03407486654168679
GVIPYFPYSK	10	Unmodified	_GVIPYFPYSK_					0	0	0		nc|ENSG00000141127|O60256-3|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2;nc|ENSG00000141127|O60256-4|PRPSAP2;nc|ENSG00000161542|Q14558|PRPSAP1;ENSG00000161542|ENST00000446526|PRPSAP1	nc|ENSG00000141127|O60256-3|PRPSAP2	nc|ENSG00000141127|O60256-3|PRPSAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8133544921875	2	585.813325	1169.6121	0.34035	0.00019938	0.95824	0.00056135	1.2986	0.00076073	585.8142234759817	62.665	1.1679	62.762	62.279	63.446	0.096985					129	42	4	0	0	0	0.093201	3	15399	15399;15440;15491		49.554	20.473	1	13673000			12492	4357	6988	6988	16029;16030;16031	16029					0.03407486654168679
GVIPYFPYSK	10	Unmodified	_GVIPYFPYSK_					0	0	0		nc|ENSG00000141127|O60256-3|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2;nc|ENSG00000141127|O60256-4|PRPSAP2;nc|ENSG00000161542|Q14558|PRPSAP1;ENSG00000161542|ENST00000446526|PRPSAP1	nc|ENSG00000141127|O60256-3|PRPSAP2	nc|ENSG00000141127|O60256-3|PRPSAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8140869140625	2	585.813325	1169.6121	0.3288	0.00019262	1.01	0.00059166	1.3388	0.00078428	585.8143884488359	62.747	1.2867	62.739	62.25	63.537	-0.0085564					158	47	6	0	0	0	0.055898	3	15474	15427;15474;15522		57.722	28.64	1	15342000			12493	4357	6988	6988	16032;16033;16034	16033					0.03407486654168679
GVISFAVWK	9	Unmodified	_GVISFAVWK_					0	0	0		ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.2265625	2	503.789653	1005.56475	0.45567	0.00022956	0.27812	0.00014011	0.73378	0.00036967	503.7895129580083	64.685	0.6681	64.778	64.471	65.139	0.092888					55	24	3	0	0	0	0.13643	1	16075	16075		45.7	16.618	1	618640			12494	8411	6989	6989	16035	16035					0.0621925217384387
GVISFAVWK	9	Unmodified	_GVISFAVWK_					0	0	0		ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2265930175781	2	503.789653	1005.56475	0.31893	0.00016067	0.39109	0.00019703	0.71003	0.0003577	503.78963915863284	64.81	0.6769	64.8	64.552	65.229	-0.0095291					57	24	3	0	0	0	0.12563	1	16105	16105		39.95	15.929	1	631650			12495	8411	6989	6989	16036	16036					0.0621925217384387
GVISLLWYF	9	Unmodified	_GVISLLWYF_					0	0	0			REV__ENST00000566802.5_1_16:74386181-74394769:-|nuORF	REV__ENST00000566802.5_1_16:74386181-74394769:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7406005859375	2	549.305136	1096.59572	0.54368	0.00029864	0.96809	0.00053177	1.5118	0.00083042	549.3056658991733	59.012	0.22375	58.998	58.889	59.113	-0.014267					11	7	2	0	0	0	0.22596	1	14353	14353		21.747	2.4897	1	183590	+		12496	20937	6990	6990	16037	16037					0.05128405488062526
GVITKLGSI	9	Unmodified	_GVITKLGSI_					0	0	0			REV__ENSG00000183873|ENST00000423572|SCN5A	REV__ENSG00000183873|ENST00000423572|SCN5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	444.8909606933594	2	444.28166	886.548768	0.25893	0.00011504	-0.15175	-6.7421E-05	0.10718	4.7616E-05	444.2815422456953	44.787	0.49289	44.856	44.682	45.175	0.068569					28	17	2	0	0	0	0.25706	1	10023	10023		1.4819	0	1	315670	+		12497	18291	6991	6991	16038	16038					0.10095545936940198
GVITKLGSI	9	Unmodified	_GVITKLGSI_					0	0	0			REV__ENSG00000183873|ENST00000423572|SCN5A	REV__ENSG00000183873|ENST00000423572|SCN5A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	444.28166	886.548768	0.47574	0.00021136	-0.33045	-0.00014682	0.14529	6.4549E-05	444.28142572654764	44.967	0.43771	44.967	44.684	45.121	0	0.074279	2.9592E-05	NaN	1.4819	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278840	+		12498	18291	6991	6991							0.10095545936940198
GVIVHIIEK	9	Unmodified	_GVIVHIIEK_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.3160705566406	2	504.316035	1006.61752	0.445	0.00022442	0.11366	5.7323E-05	0.55866	0.00028174	504.3159448050768	36.546	1.0075	36.546	36.307	37.314	0					77	35	3	0	0	0	0.010453	2	7424	7424;7473		78.728	44.626	1	2309200			12499	8734	6992	6992	16039;16040	16039					0.11447210236656247
GVIVHIIEK	9	Unmodified	_GVIVHIIEK_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.3163146972656	2	504.316035	1006.61752	0.44965	0.00022677	0.060732	3.0628E-05	0.51039	0.0002574	504.31593646709445	36.433	1.1521	36.515	36.284	37.437	0.082359					85	41	3	0	0	0	0.004681	2	7384	7384;7434		88.954	46.859	1	2219000			12500	8734	6992	6992	16041;16042	16041					0.11447210236656247
GVIVHIIEK	9	Unmodified	_GVIVHIIEK_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.3161926269531	2	504.316035	1006.61752	0.75318	0.00037984	-0.26644	-0.00013437	0.48674	0.00024547	504.31576987658696	36.441	0.97105	36.527	36.244	37.215	0.08625					69	34	3	0	0	0	0.010453	1	7371	7371		78.728	44.626	1	2192100			12501	8734	6992	6992	16043	16043					0.11447210236656247
GVIVIKFVFFN	11	Unmodified	_GVIVIKFVFFN_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8827514648438	2	641.881542	1281.74853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.51	1	96.505	96.005	97.005	-0.0055466								0	0	0	0.38126	1	25810	25810		1.1933	0	1		+		12502	23016	6993	6993	16044	16044					0.11892600884698368
GVKERKPAI	9	Unmodified	_GVKERKPAI_					0	0	0			REV__ENST00000493886.5_1_9:35062192-35072350:-|nuORF	REV__ENST00000493886.5_1_9:35062192-35072350:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3172912597656	2	499.311284	996.608014	0.176	8.7878E-05	-0.27063	-0.00013513	-0.09463	-4.725E-05	499.31101614113373	17.946	0.42664	17.828	17.663	18.089	-0.11739					23	14	2	0	0	0	0.26099	1	1739	1739		2.9952	0	1	87548	+		12503	21645	6994	6994	16045	16045					0.10957441951120472
GVKGAEDVWHL	11	Unmodified	_GVKGAEDVWHL_					0	0	0			REV__nc|ENSG00000106327|Q9UP52-2|TFR2	REV__nc|ENSG00000106327|Q9UP52-2|TFR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.5668640136719	3	404.212017	1209.61422	-0.3927	-0.00015873	-1.6289	-0.00065844	-2.0216	-0.00081717	404.21130915419684	15.031	0.13699	14.921	14.818	14.955	-0.10982					7	4	2	0	0	0	0.33326	1	895	895		1.4551	0.38366	1	31881	+		12504	14514	6995	6995	16046	16046					0.01779915392012299
GVKKPTKAL	9	Unmodified	_GVKKPTKAL_					0	0	0		ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1;nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.31060791015625	2	471.310752	940.606951	-0.23827	-0.0001123	0.011355	5.3518E-06	-0.22691	-0.00010695	471.3106500753806	14.04	0.57126	14.04	13.794	14.365	0					36	19	2	0	0	0	0.22935	1	610	610		19.362	4.5237	1	118030			12505	756	6996	6996	16047	16047					0.13427227582224077
GVKKPTKAL	9	Unmodified	_GVKKPTKAL_					0	0	0		ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1;nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.31060791015625	2	471.310752	940.606951	-0.18677	-8.8026E-05	-0.14114	-6.6523E-05	-0.32791	-0.00015455	471.3105869250629	14.113	0.51834	14.008	13.79	14.308	-0.10466					31	17	2	0	0	0	0.27726	1	641	641		12.241	0.60036	1	155390			12506	756	6996	6996	16048	16048					0.13427227582224077
GVKKPTKAL	9	Unmodified	_GVKKPTKAL_					0	0	0		ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1;nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.3105773925781	2	471.310752	940.606951	-0.12271	-5.7834E-05	-0.19308	-9.0999E-05	-0.31579	-0.00014883	471.31056902522016	14.119	0.6527	14.053	13.747	14.4	-0.066068					38	22	2	0	0	0	0.30459	1	635	635		8.1555	0.8663	1	115720			12507	756	6996	6996	16049	16049					0.13427227582224077
GVKSLSKEE	9	Unmodified	_GVKSLSKEE_					0	0	0		ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2773742675781	2	488.769114	975.523675	0.25711	0.00012567	-0.26306	-0.00012857	-0.0059535	-2.9099E-06	488.7691408810075	26.104	0.46097	26.082	25.867	26.328	-0.022238					28	16	2	0	0	0	0.25622	1	4317	4317		7.2892	1.0834	1	88629			12508	2736	6997	6997	16050	16050					0.03493446343713913
GVKSLSKEE	9	Unmodified	_GVKSLSKEE_					0	0	0		ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	488.769114	975.523675	0.10859	5.3078E-05	-0.47127	-0.00023034	-0.36267	-0.00017726	488.7692250373971	26.107	0.36392	26.068	25.871	26.235	-0.038671	-0.007083	-0.00012665	NaN	10.074	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99063			12509	2736	6997	6997							0.03493446343713913
GVKSVDPK	8	Unmodified	_GVKSVDPK_					0	0	0		nc|ENSG00000176974|P34896-4|SHMT1;ENSG00000176974|ENST00000316694|SHMT1	nc|ENSG00000176974|P34896-4|SHMT1	nc|ENSG00000176974|P34896-4|SHMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.7399597167969	2	415.242535	828.470518	0.093524	3.8835E-05	-1.3113	-0.00054449	-1.2177	-0.00050565	415.24193073628817	21.041	0.90777	21.041	20.772	21.68	0					51	31	3	0	0	0	0.34337	1	2875	2875		5.2307	0.47466	1	372340			12510	6953	6998	6998	16051	16051					0.04942113351705757
GVKSVDPK	8	Unmodified	_GVKSVDPK_					0	0	0		nc|ENSG00000176974|P34896-4|SHMT1;ENSG00000176974|ENST00000316694|SHMT1	nc|ENSG00000176974|P34896-4|SHMT1	nc|ENSG00000176974|P34896-4|SHMT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	415.242535	828.470518	0.49948	0.0002074	-1.8496	-0.00076802	-1.3501	-0.00056061	415.2416559570818	21.17	0.8191	21.06	20.779	21.599	-0.11003	0.0093734	-0.00021504	NaN	5.2307	49	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382340			12511	6953	6998	6998							0.04942113351705757
GVKVRVPQ	8	Unmodified	_GVKVRVPQ_					0	0	0			REV__ENST00000554777.2_1_14:64068346-64068445:+|nuORF	REV__ENST00000554777.2_1_14:64068346-64068445:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2297668457031	2	441.779619	881.544686	0.01793	7.9212E-06	-0.1208	-5.3368E-05	-0.10287	-4.5447E-05	441.7795093394802	17.861	1.0955	17.801	17.53	18.626	-0.060429					81	38	3	0	0	0	0.344	1	1920	1920		2.5775	0.51773	1	160740	+		12512	22238	6999	6999	16052	16052					0.09917501233894654
GVKVRVPQ	8	Unmodified	_GVKVRVPQ_					0	0	0			REV__ENST00000554777.2_1_14:64068346-64068445:+|nuORF	REV__ENST00000554777.2_1_14:64068346-64068445:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	441.779619	881.544686	0.098939	4.3709E-05	-0.070339	-3.1074E-05	0.0286	1.2635E-05	441.77951657317533	17.726	1.1355	17.726	17.452	18.588	0	-0.018342	1.951E-06	NaN	2.5775	74	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158910	+		12513	22238	6999	6999							0.09917501233894654
GVLAWVKEK	9	Unmodified	_GVLAWVKEK_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.3084106445312	2	515.30821	1028.60187	0.24769	0.00012764	0.21137	0.00010892	0.45906	0.00023656	515.3084595970074	41.543	0.5452	41.543	41.225	41.771	0					37	22	3	0	0	0	0.0059482	2	8938	8938;8983		85.642	50.515	1	2963200			12514	400	7000	7000	16053;16054	16053					0.08870923719587154
GVLAWVKEK	9	Unmodified	_GVLAWVKEK_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3084716796875	2	515.30821	1028.60187	0.14572	7.5093E-05	0.30751	0.00015846	0.45323	0.00023355	515.3083484118856	41.222	0.51016	41.313	41.029	41.539	0.090252					47	18	3	0	0	0	0.0059482	2	8892	8843;8892		85.642	56.56	1	1787800			12515	400	7000	7000	16055;16056	16056					0.08870923719587154
GVLAWVKEK	9	Unmodified	_GVLAWVKEK_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-3|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.3084106445312	2	515.30821	1028.60187	0.11197	5.7697E-05	0.66698	0.0003437	0.77894	0.00040139	515.3084080036808	41.195	0.56823	41.292	40.909	41.477	0.096626					73	20	5	0	0	0	0.0059482	2	8826	8826;8882		85.642	56.56	1	1849400			12516	400	7000	7000	16057;16058	16057					0.08870923719587154
GVLCRPEV	8	Unmodified	_GVLCRPEV_					0	0	0			REV__ENST00000355451.7_1_7:44423421-44423562:-|nuORF	REV__ENST00000355451.7_1_7:44423421-44423562:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.21038818359375	2	436.736563	871.458573	0.10838	4.7335E-05	-0.87039	-0.00038013	-0.762	-0.0003328	436.73631481489815	20.97	0.71777	20.97	20.65	21.368	0					44	24	2	0	0	0	0.34272	1	2742	2742		7.9102	2.6795	1	110010	+		12517	20188	7001	7001	16059	16059					0.017701733368767236
GVLCRPEV	8	Unmodified	_GVLCRPEV_					0	0	0			REV__ENST00000355451.7_1_7:44423421-44423562:-|nuORF	REV__ENST00000355451.7_1_7:44423421-44423562:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	436.736563	871.458573	0.26869	0.00011735	-1.124	-0.00049087	-0.85526	-0.00037352	436.7363738335331	21.158	0.65406	21.048	20.753	21.407	-0.11003	0.017091	-0.00013771	NaN	7.9102	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103610	+		12518	20188	7001	7001							0.017701733368767236
GVLCRPEV	8	Unmodified	_GVLCRPEV_					0	0	0			REV__ENST00000355451.7_1_7:44423421-44423562:-|nuORF	REV__ENST00000355451.7_1_7:44423421-44423562:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	436.736563	871.458573	0.13769	6.0133E-05	-0.96442	-0.0004212	-0.82673	-0.00036106	436.73641948065676	21.128	0.6518	21.075	20.749	21.401	-0.05291	0.044171	1.6378E-06	NaN	7.9102	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111660	+		12519	20188	7001	7001							0.017701733368767236
GVLCYLYYLGD	11	Unmodified	_GVLCYLYYLGD_					0	0	0			REV__ENST00000483972.1_1_6:31548488-31550294:-|nuORF	REV__ENST00000483972.1_1_6:31548488-31550294:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.1851806640625	3	426.874014	1277.60021	-0.29401	-0.00012551	-2.3963	-0.0010229	-2.6903	-0.0011484	426.8730764798714	23.058	0.40077	22.971	22.79	23.191	-0.087608					20	13	2	0	0	0	0.33277	1	3370	3370		3.0723	0.98626	1	44770	+		12520	19125	7002	7002	16060	16060					-0.027484981513225648
GVLDAILATK	10	Unmodified	_GVLDAILATK_					0	0	0		nc|ENSG00000292339|O95671-3|ASMTL;nc|ENSG00000292339|O95671-2|ASMTL;ENSG00000169093|ENST00000381317|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8057861328125	2	500.8055	999.596446	0.61801	0.0003095	0.12724	6.3723E-05	0.74525	0.00037323	500.80559740784645	65.836	1.1709	65.836	65.488	66.659	0					107	41	4	0	0	0	1.5919E-13	2	16452	16452;16495		184.36	101.83	1	5452800			12521	6327	7003	7003	16061;16062	16061					0.09663200137129024
GVLDAILATK	10	Unmodified	_GVLDAILATK_					0	0	0		nc|ENSG00000292339|O95671-3|ASMTL;nc|ENSG00000292339|O95671-2|ASMTL;ENSG00000169093|ENST00000381317|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8057556152344	2	500.8055	999.596446	0.50063	0.00025072	0.20909	0.00010471	0.70972	0.00035543	500.8056158634873	65.672	1.1766	65.761	65.46	66.636	0.088882					110	42	4	0	0	0	4.6501E-14	3	16408	16361;16408;16460		197.81	115.28	1	4872100			12522	6327	7003	7003	16063;16064;16065	16064					0.09663200137129024
GVLDAILATK	10	Unmodified	_GVLDAILATK_					0	0	0		nc|ENSG00000292339|O95671-3|ASMTL;nc|ENSG00000292339|O95671-2|ASMTL;ENSG00000169093|ENST00000381317|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8057556152344	2	500.8055	999.596446	0.49215	0.00024647	0.018881	9.4557E-06	0.51103	0.00025593	500.80548564282526	65.827	0.9593	65.816	65.448	66.408	-0.011337					96	34	4	0	0	0	4.6501E-14	3	16440	16394;16440;16484		197.81	115.28	1	4542700			12523	6327	7003	7003	16066;16067;16068	16067					0.09663200137129024
GVLDRQLETLK	11	Unmodified	_GVLDRQLETLK_					0	0	0			REV__ENSG00000006607|ENST00000264042|FARP2	REV__ENSG00000006607|ENST00000264042|FARP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.0815124511719	3	424.58211	1270.7245	-0.28934	-0.00012285	-0.74581	-0.00031666	-1.0351	-0.0004395	424.58177651192113	18.459	0.65455	18.341	17.928	18.582	-0.11739					39	22	2	0	0	0	0.33346	1	1816	1816		0.50596	0	1	217860	+		12524	13364	7004	7004	16069	16069					0.09996715660372502
GVLFMAAP	8	Unmodified	_GVLFMAAP_					0	0	0			REV__nc|ENSG00000112041|O00294-2|TULP1	REV__nc|ENSG00000112041|O00294-2|TULP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.22174072265625	2	403.217475	804.420396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.876	1	17.759	17.259	18.259	-0.11739								0	0	0	0.35779	1	1764	1764		11.114	4.7604	1		+		12525	14750	7005	7005	16070	16070					0.010362874221982565
GVLGKYGIYIL	11	Unmodified	_GVLGKYGIYIL_					0	0	0			REV__LTR9D_dup356|chr8:133364552-133365002:+|4.041593351427075|0.0741289277495715|5.77|531.0|17|1|anti-sense	REV__LTR9D_dup356|chr8:133364552-133365002:+|4.041593351427075|0.0741289277495715|5.77|531.0|17|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8564453125	2	598.357899	1194.70125	0.46626	0.00027899	-0.14168	-8.4775E-05	0.32458	0.00019422	598.3578587132522	88.57	0.67112	88.567	88.208	88.879	-0.0028381					48	29	2	0	0	0	0.33255	1	23291	23291		2.9952	2.9952	1	139580	+		12526	22850	7006	7006	16071	16071					0.11168321613695298
GVLGNKDL	8	Unmodified	_GVLGNKDL_					0	0	0		ENST00000553745.5_1_14:74753379-74769587:-|nuORF;ENSG00000119688|ENST00000356924|ABCD4;ENST00000493427.1_1_14:74766202-74769587:-|nuORF;ENST00000557554.5_1_14:74757154-74769615:-|nuORF;ENST00000493752.5_1_14:74766202-74769615:-|nuORF;ENST00000469672.5_1_14:74762559-74769587:-|nuORF;ENST00000477803.5_1_14:74764631-74769615:-|nuORF	ENST00000553745.5_1_14:74753379-74769587:-|nuORF	ENST00000553745.5_1_14:74753379-74769587:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2504577636719	2	408.23471	814.454868	-0.36412	-0.00014865	0.85012	0.00034705	0.486	0.0001984	408.2349572004245	14.879	0.45336	14.879	14.701	15.154	0					35	15	3	0	0	0	0.44734	1	833	833		6.7232	0	1	494300			12527	2899	7007	7007	16072	16072					0.04021826834662079
GVLGPIINK	9	Unmodified	_GVLGPIINK_					0	0	0		nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4;ENST00000523568.1_7:102228019-102246337:-|nuORF	nc|ENSG00000105808|O43374-2|RASA4	nc|ENSG00000105808|O43374-2|RASA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.7896423339844	2	455.789653	909.564752	0.38069	0.00017351	-0.068304	-3.1132E-05	0.31239	0.00014238	455.7895060519844	44.81	0.7438	44.81	44.462	45.206	0					66	26	3	0	0	0	0.0036555	2	9931	9931;9978		97.075	52.668	1	1200300			12528	2026	7008	7008	16073;16074	16073					0.1063525217384722
GVLGPIINK	9	Unmodified	_GVLGPIINK_					0	0	0		nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4;ENST00000523568.1_7:102228019-102246337:-|nuORF	nc|ENSG00000105808|O43374-2|RASA4	nc|ENSG00000105808|O43374-2|RASA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.78973388671875	2	455.789653	909.564752	0.29503	0.00013447	0.13487	6.1471E-05	0.4299	0.00019594	455.78954236193704	44.715	0.74052	44.784	44.463	45.204	0.068573					67	26	4	0	0	0	0.0036555	1	9923	9923		97.075	52.668	1	1309300			12529	2026	7008	7008	16075	16075					0.1063525217384722
GVLGPIINK	9	Unmodified	_GVLGPIINK_					0	0	0		nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4;ENST00000523568.1_7:102228019-102246337:-|nuORF	nc|ENSG00000105808|O43374-2|RASA4	nc|ENSG00000105808|O43374-2|RASA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.78973388671875	2	455.789653	909.564752	0.32442	0.00014787	0.075305	3.4323E-05	0.39972	0.00018219	455.7895239121788	44.671	0.68322	44.746	44.418	45.101	0.07505					62	24	3	0	0	0	0.00207	1	9921	9921		109.63	71.478	1	1204300			12530	2026	7008	7008	16076	16076					0.1063525217384722
GVLGQVSVL	9	Unmodified	_GVLGQVSVL_					0	0	0		ENSG00000156502|ENST00000359655|SUPV3L1;ENST00000483572.5_1_10:70940047-70942298:+|nuORF	ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.590576171875	2	436.26601	870.517468	0.0084411	3.6826E-06	0.15771	6.8803E-05	0.16615	7.2485E-05	436.2658819002467	39.367	0.68677	39.467	39.262	39.949	0.099407					36	24	2	0	0	0	0.23783	1	8298	8298		12.532	0	1	284010			12531	5238	7009	7009	16077	16077					0.07702972902859528
GVLGQVSVL	9	Unmodified	_GVLGQVSVL_					0	0	0		ENSG00000156502|ENST00000359655|SUPV3L1;ENST00000483572.5_1_10:70940047-70942298:+|nuORF	ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	436.26601	870.517468	-0.38151	-0.00016644	0.24474	0.00010677	-0.13677	-5.9669E-05	436.2660901712935	39.48	0.61683	39.48	39.242	39.858	0	-0.0023874	8.3906E-05	NaN	15.847	30	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207690			12532	5238	7009	7009							0.07702972902859528
GVLGSSKVLAK	11	Unmodified	_GVLGSSKVLAK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.83203125	2	529.832049	1057.64954	0.54588	0.00028922	-0.16658	-8.8257E-05	0.3793	0.00020097	529.8318549043682	28.88	0.60386	28.88	28.67	29.273	0					44	21	3	0	0	0	0.004696	2	5085	5085;5136		80.896	51.055	1	486920			12533	5447	7010	7010	16078;16079	16078					0.12302577919808755
GVLGSSKVLAK	11	Unmodified	_GVLGSSKVLAK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.83203125	2	529.832049	1057.64954	0.3593	0.00019037	-0.020931	-1.109E-05	0.33837	0.00017928	529.8320023522173	28.839	0.62845	28.834	28.599	29.228	-0.0042572					49	21	3	0	0	0	0.011413	1	5072	5072		66.683	47.426	1	448500			12534	5447	7010	7010	16080	16080					0.12302577919808755
GVLGSSKVLAK	11	Unmodified	_GVLGSSKVLAK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.8323974609375	2	529.832049	1057.64954	0.3226	0.00017093	-0.012081	-6.4009E-06	0.31052	0.00016453	529.8320058881422	28.877	0.59988	28.878	28.662	29.262	0.0014191					49	21	3	0	0	0	0.0096108	1	5084	5084		70.496	44.475	1	468140			12535	5447	7010	7010	16081	16081					0.12302577919808755
GVLGTVVHGK	10	Unmodified	_GVLGTVVHGK_					0	0	0		ENSG00000109919|ENST00000302503|MTCH2;MTCH2|p.V91D|1|0.34|ENSG00000109919|chr11:47638706-47638706|A/T|missense_variant;ENST00000539759.5_1_11:47639025-47663996:-|nuORF;MTCH2|p.G188Dfs*4|1|0.05|ENSG00000109919|chr11:47629025-47629026|-/GAGATCA|frameshift_variant	ENSG00000109919|ENST00000302503|MTCH2	ENSG00000109919|ENST00000302503|MTCH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7897033691406	2	483.790184	965.565815	0.23258	0.00011252	-0.31423	-0.00015202	-0.081652	-3.9503E-05	483.78994057980816	28.833	0.5285	28.833	28.64	29.169	0					39	18	3	0	0	0	0.055898	1	5078	5078		57.722	30.838	1	281740			12536	2279	7011	7011	16082	16082					0.08165466542766353
GVLGTVVHGK	10	Unmodified	_GVLGTVVHGK_					0	0	0		ENSG00000109919|ENST00000302503|MTCH2;MTCH2|p.V91D|1|0.34|ENSG00000109919|chr11:47638706-47638706|A/T|missense_variant;ENST00000539759.5_1_11:47639025-47663996:-|nuORF;MTCH2|p.G188Dfs*4|1|0.05|ENSG00000109919|chr11:47629025-47629026|-/GAGATCA|frameshift_variant	ENSG00000109919|ENST00000302503|MTCH2	ENSG00000109919|ENST00000302503|MTCH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7899169921875	2	483.790184	965.565815	0.18849	9.1191E-05	-0.35296	-0.00017076	-0.16447	-7.9569E-05	483.79000631728206	28.832	0.71543	28.828	28.599	29.315	-0.0042572					34	24	2	0	0	0	0.055898	1	5073	5073		57.722	29.235	1	284630			12537	2279	7011	7011	16083	16083					0.08165466542766353
GVLGTVVHGK	10	Unmodified	_GVLGTVVHGK_					0	0	0		ENSG00000109919|ENST00000302503|MTCH2;MTCH2|p.V91D|1|0.34|ENSG00000109919|chr11:47638706-47638706|A/T|missense_variant;ENST00000539759.5_1_11:47639025-47663996:-|nuORF;MTCH2|p.G188Dfs*4|1|0.05|ENSG00000109919|chr11:47629025-47629026|-/GAGATCA|frameshift_variant	ENSG00000109919|ENST00000302503|MTCH2	ENSG00000109919|ENST00000302503|MTCH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.78936767578125	2	483.790184	965.565815	0.1067	5.1619E-05	-0.24062	-0.00011641	-0.13392	-6.479E-05	483.78995278949577	28.837	0.54403	28.838	28.635	29.179	0.0004673					41	19	3	0	0	0	0.055898	1	5072	5072		57.722	29.235	1	223850			12538	2279	7011	7011	16084	16084					0.08165466542766353
GVLIRLHK	8	Unmodified	_GVLIRLHK_					0	0	0			REV__ENST00000406246.7_1_11:65421647-65421815:-|nuORF	REV__ENST00000406246.7_1_11:65421647-65421815:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.2364196777344	2	468.311087	934.60762	0.41274	0.00019329	0.0030384	1.4229E-06	0.41577	0.00019471	468.31093614958166	33.927	0.52344	33.927	33.753	34.277	0					28	18	2	0	0	0	0.34337	1	6593	6593		5.2307	0	1	139870	+		12539	20738	7012	7012	16085	16085					0.13770067021937393
GVLIRLHK	8	Unmodified	_GVLIRLHK_					0	0	0			REV__ENST00000406246.7_1_11:65421647-65421815:-|nuORF	REV__ENST00000406246.7_1_11:65421647-65421815:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2366027832031	2	468.311087	934.60762	0.63995	0.0002997	-0.241	-0.00011286	0.39896	0.00018684	468.3108661182765	33.833	0.53073	33.899	33.704	34.235	0.066357					31	18	2	0	0	0	0.34218	1	6655	6655		5.2307	0	1	138050	+		12540	20738	7012	7012	16086	16086					0.13770067021937393
GVLKAVHPHDF	11	Unmodified	_GVLKAVHPHDF_					0	0	0			REV__ENSG00000092445|ENST00000263798|TYRO3	REV__ENSG00000092445|ENST00000263798|TYRO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.2166442871094	3	407.224257	1218.65094	0.037221	1.5157E-05	0.53842	0.00021926	0.57564	0.00023442	407.22461806923855	40.3	0.90823	40.3	39.914	40.822	0					66	31	3	0	0	0	0.40256	1	8480	8480		10.899	3.29	1	194790	+		12541	14082	7013	7013	16087	16087					0.050362120085537754
GVLKKVIRH	9	Unmodified	_GVLKKVIRH_					0	0	0		nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC	nc|ENSG00000041982|P24821-4|TNC	nc|ENSG00000041982|P24821-4|TNC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7588500976562	2	525.350743	1048.68693	0.38772	0.00020369	-0.059307	-3.1157E-05	0.32841	0.00017253	525.3505754160658	19.451	0.39859	19.335	19.116	19.514	-0.11592					15	13	2	0	0	0	0.26168	1	2271	2271		1.8442	1.2427	1	38178			12542	608	7014	7014	16088	16088					0.1645371397605686
GVLMMVGLTLI	11	Unmodified	_GVLMMVGLTLI_					0	0	0			REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2	REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.8355102539062	2	573.834888	1145.65522	0.82977	0.00047615	0.093849	5.3854E-05	0.92362	0.00053001	573.8349311035147	47.151	1.1773	47.206	46.709	47.886	0.054371					140	42	4	0	0	0	0.14521	3	10609	10609;10696;10746		36.127	36.127	1	12322000	+		12543	17132	7015	7015	16089;16090;16091	16089					0.08822217115630338
GVLNYQIRLCL	11	Unmodified	_GVLNYQIRLCL_					0	0	0			REV__Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|178|2|anti-sense	REV__Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|178|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.85205078125	3	431.244552	1290.71183	-0.070559	-3.0428E-05	0.51798	0.00022338	0.44742	0.00019295	431.2448376165616	39.511	0.49651	39.611	39.372	39.868	0.099403					21	17	2	0	0	0	0.33202	1	8345	8345		2.8433	2.8433	1	454930	+		12544	22704	7016	7016	16092	16092					0.07809980996489685
GVLQLGNIVFK	11	Unmodified	_GVLQLGNIVFK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.3611450195312	2	594.360973	1186.70739	0.47201	0.00028054	-0.15825	-9.4056E-05	0.31376	0.00018649	594.3608357574784	70.838	1.0996	70.838	70.512	71.612	0					117	38	5	0	0	0	2.652E-18	4	17982	17940;17982;18025;18073		193.29	139.46	1	9186700			12545	1574	7017	7017	16093;16094;16095;16096	16094					0.12150839845230621
GVLQLGNIVFK	11	Unmodified	_GVLQLGNIVFK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.361083984375	2	594.360973	1186.70739	0.46851	0.00027846	-0.20216	-0.00012015	0.26635	0.00015831	594.3608203995121	70.875	0.88931	70.936	70.602	71.491	0.060783					105	31	5	0	0	0	2.652E-18	5	17975	17929;17975;18018;18065;18117		193.29	133.47	1	10739000			12546	1574	7017	7017	16097;16098;16099;16100;16101	16098					0.12150839845230621
GVLQLGNIVFK	11	Unmodified	_GVLQLGNIVFK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7676391601562	2	594.360973	1186.70739	0.47601	0.00028292	-0.24192	-0.00014378	0.2341	0.00013914	594.3608336674808	71.589	0.38423	71.646	71.537	71.922	0.056572					19	13	2	0	0	0	0.16027	1	18201	18201		61.602	45.453	1	160250			12547	1574	7017	7017	16102	16102					0.12150839845230621
GVLQLGNIVFK	11	Unmodified	_GVLQLGNIVFK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.361083984375	2	594.360973	1186.70739	0.49627	0.00029496	-0.23118	-0.0001374	0.26509	0.00015756	594.3607999275583	70.958	0.9615	70.933	70.578	71.54	-0.024864					111	34	5	0	0	0	6.9943E-14	4	17948	17948;17998;18048;18101		179.17	133.47	1	9174000			12548	1574	7017	7017	16103;16104;16105;16106	16103					0.12150839845230621
GVLQSLIEK	9	Unmodified	_GVLQSLIEK_					0	0	0		SBNO1|p.N1108Efs*3|1|0.22|ENSG00000139697|chr12:123309827-123309830|TATT/-|frameshift_variant;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1	SBNO1|p.N1108Efs*3|1|0.22|ENSG00000139697|chr12:123309827-123309830|TATT/-|frameshift_variant	SBNO1|p.N1108Efs*3|1|0.22|ENSG00000139697|chr12:123309827-123309830|TATT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7875671386719	2	493.797675	985.580796	0.55207	0.00027261	-1.2094	-0.00059719	-0.65732	-0.00032458	493.79727303069177	53.204	0.42332	53.26	53.111	53.535	0.056255					22	15	2	0	0	0	0.068498	1	12532	12532		46.022	9.5161	1	238020			12549	4259	7018	7018	16107	16107					0.08742913620108084
GVLQSLIEK	9	Unmodified	_GVLQSLIEK_					0	0	0		SBNO1|p.N1108Efs*3|1|0.22|ENSG00000139697|chr12:123309827-123309830|TATT/-|frameshift_variant;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1	SBNO1|p.N1108Efs*3|1|0.22|ENSG00000139697|chr12:123309827-123309830|TATT/-|frameshift_variant	SBNO1|p.N1108Efs*3|1|0.22|ENSG00000139697|chr12:123309827-123309830|TATT/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.797675	985.580796	0.49055	0.00024223	-0.78922	-0.00038971	-0.29867	-0.00014748	493.79745374433355	53.244	0.55975	53.244	53.062	53.622	0	-0.064984	-7.7634E-05	NaN	46.022	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237410			12550	4259	7018	7018							0.08742913620108084
GVLQSLIEK	9	Unmodified	_GVLQSLIEK_					0	0	0		SBNO1|p.N1108Efs*3|1|0.22|ENSG00000139697|chr12:123309827-123309830|TATT/-|frameshift_variant;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1	SBNO1|p.N1108Efs*3|1|0.22|ENSG00000139697|chr12:123309827-123309830|TATT/-|frameshift_variant	SBNO1|p.N1108Efs*3|1|0.22|ENSG00000139697|chr12:123309827-123309830|TATT/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.797675	985.580796	0.43716	0.00021587	-0.37903	-0.00018716	0.058128	2.8703E-05	493.797514604222	53.432	0.47057	53.423	53.192	53.662	-0.0096054	0.11383	0.00032747	NaN	46.022	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307180			12551	4259	7018	7018							0.08742913620108084
GVLSDINLK	9	Unmodified	_GVLSDINLK_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.77178955078125	2	479.782025	957.549496	0.1647	7.9018E-05	-0.61207	-0.00029366	-0.44738	-0.00021464	479.78168667605433	49.93	0.43737	49.93	49.701	50.138	0					29	15	2	0	0	0	0.10059	2	11504	11504;11557		38.176	12.332	1	461380			12552	6755	7019	7019	16108;16109	16108					0.0690234058599799
GVLSDINLK	9	Unmodified	_GVLSDINLK_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7720031738281	2	479.782025	957.549496	0.40005	0.00019194	-0.67217	-0.0003225	-0.27213	-0.00013056	479.7816460658663	49.856	0.45861	49.877	49.719	50.177	0.020691					36	16	3	0	0	0	0.10059	2	11540	11485;11540		38.176	12.776	1	446660			12553	6755	7019	7019	16110;16111	16111					0.0690234058599799
GVLSDINLK	9	Unmodified	_GVLSDINLK_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.782025	957.549496	0.37801	0.00018136	-0.75744	-0.0003634	-0.37943	-0.00018204	479.78166205245026	49.869	0.46366	49.914	49.721	50.185	0.044891	0.0073068	-6.3825E-05	NaN	38.176	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	598830			12554	6755	7019	7019							0.0690234058599799
GVLVHLVI	8	Unmodified	_GVLVHLVI_					0	0	0		ENSG00000164626|ENST00000359534|KCNK5	ENSG00000164626|ENST00000359534|KCNK5	ENSG00000164626|ENST00000359534|KCNK5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.8934631347656	2	425.281463	848.548374	-0.041245	-1.7541E-05	0.16915	7.1935E-05	0.1279	5.4394E-05	425.28140532877376	19.887	0.42826	19.771	19.612	20.04	-0.11592					25	14	2	0	0	0	0.3439	1	2325	2325		2.8892	2.0956	1	50714			12555	5857	7020	7020	16112	16112					0.11804171007736386
GVLVHLVI	8	Unmodified	_GVLVHLVI_					0	0	0		ENSG00000164626|ENST00000359534|KCNK5	ENSG00000164626|ENST00000359534|KCNK5	ENSG00000164626|ENST00000359534|KCNK5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	425.281463	848.548374	0.099246	4.2208E-05	-0.11252	-4.7853E-05	-0.013275	-5.6456E-06	425.2812216335443	19.812	0.41045	19.757	19.624	20.034	-0.055693	0.003593	-0.00015334	NaN	2.8892	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59575			12556	5857	7020	7020							0.11804171007736386
GVLVTHEL	8	Unmodified	_GVLVTHEL_					0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.2377014160156	2	434.25036	866.486168	0.057166	2.4825E-05	-0.88062	-0.00038241	-0.82345	-0.00035758	434.2497910452244	26.811	0.53553	26.8	26.625	27.16	-0.01156					28	18	2	0	0	0	0.421	1	4489	4489		15.768	1.1865	1	147240	+		12557	16585	7021	7021	16113	16113					0.04758399868762808
GVLYDITV	8	Unmodified	_GVLYDITV_					0	0	0			REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.7131042480469	2	440.244744	878.474934	0.084436	3.7173E-05	-0.39598	-0.00017433	-0.31154	-0.00013715	440.24427066906065	67.194	0.37391	67.194	66.964	67.338	0					27	12	3	0	0	0	0.34337	1	16818	16818		5.2307	0	1	144160	+		12558	22880	7022	7022	16114	16114					0.030835777746005988
GVLYDITV	8	Unmodified	_GVLYDITV_					0	0	0			REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	440.244744	878.474934	0.02485	1.094E-05	-0.46213	-0.00020345	-0.43728	-0.00019251	440.24451493126264	67.077	0.39536	67.155	66.986	67.382	0.078041	-0.022123	-5.1607E-05	NaN	5.2307	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130120	+		12559	22880	7022	7022							0.030835777746005988
GVLYDITV	8	Unmodified	_GVLYDITV_					0	0	0			REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	440.244744	878.474934	-0.043942	-1.9345E-05	-0.31006	-0.0001365	-0.354	-0.00015585	440.2445158853825	67.199	0.41377	67.183	67.009	67.423	-0.016296	0.0058138	8.2287E-05	NaN	5.2307	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91669	+		12560	22880	7022	7022							0.030835777746005988
GVMATHFL	8	Unmodified	_GVMATHFL_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.90887451171875	2	438.225831	874.437109	0.23687	0.0001038	1.558	0.00068277	1.7949	0.00078657	438.22638088475685	44.71	0.24393	44.785	44.615	44.859	0.075047					12	8	2	0	0	0	0.34185	1	9885	9885		5.7604	0	1	113060	+		12561	16948	7023	7023	16115	16115					-0.005132116918616703
GVMDYYLKY	9	Oxidation (M)	_GVM(Oxidation (M))DYYLKY_		GVM(1)DYYLKY		GVM(60)DYYLKY	0	0	1		ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2736206054688	2	584.273175	1166.5318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.71	1	51.71	51.21	52.21	0								0	0	0	0.052743	1	12087	12087		60.074	33.19	1				12562	7089	7024	7024	16116	16116		794			-0.044807427311980064
GVMGTKQL	8	Unmodified	_GVMGTKQL_					0	0	0			REV__ENSG00000240563|ENST00000498273|L1TD1	REV__ENSG00000240563|ENST00000498273|L1TD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.9204406738281	2	417.231113	832.447674	0.048695	2.0317E-05	-1.6998	-0.00070921	-1.6511	-0.0006889	417.2311961380065	40.866	0.7275	40.966	40.368	41.095	0.099403					34	26	3	0	0	0	0.34185	1	8657	8657		10.183	0	1	143190	+		12563	19171	7025	7025	16117	16117					0.02474770962578532
GVMQLVDYIPY	11	Unmodified	_GVMQLVDYIPY_					0	0	0			REV__ENST00000493271.1_1_2:96945134-96947649:-|nuORF	REV__ENST00000493271.1_1_2:96945134-96947649:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.8978576660156	3	433.221413	1296.64241	-0.41332	-0.00017906	0.77533	0.00033589	0.36201	0.00015683	433.2218536143872	14.214	0.50592	14.148	13.977	14.483	-0.066067					28	17	2	0	0	0	0.33094	1	755	755		7.4771	1.6089	1	199640	+		12564	16215	7026	7026	16118	16118					0.005954772570703426
GVMRRNMRPTC	11	Unmodified	_GVMRRNMRPTC_					0	0	0			REV__ENST00000460871.1_1_9:71990729-72006671:+|nuORF	REV__ENST00000460871.1_1_9:71990729-72006671:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.21771240234375	3	440.886376	1319.6373	-0.18467	-8.1418E-05	-0.26813	-0.00011821	-0.45279	-0.00019963	440.8864360634821	13.712	0.57621	13.712	13.537	14.113	0					48	19	4	0	0	0	0.46842	1	583	583		2.2527	0	1	741460	+		12565	15718	7027	7027	16119	16119					-0.009734283581792624
GVMSPPLSR	9	Oxidation (M)	_GVM(Oxidation (M))SPPLSR_		GVM(1)SPPLSR		GVM(76)SPPLSR	0	0	1		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2524719238281	2	480.252577	958.490601	-0.10284	-4.9391E-05	-0.10778	-5.1763E-05	-0.21063	-0.00010115	480.25260709586934	27.797	1.521	27.797	26.789	28.31	0					105	52	3	0	0	0	0.012386	2	4760	4760;4812		75.761	35.811	1	786570			12566	8157	7028	7028	16120;16121	16120		887			0.009695410200151855
GVMSPPLSR	9	Oxidation (M)	_GVM(Oxidation (M))SPPLSR_		GVM(1)SPPLSR		GVM(58)SPPLSR	0	0	1		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.25250244140625	2	480.252577	958.490601	-0.070462	-3.3839E-05	-0.20006	-9.608E-05	-0.27052	-0.00012992	480.252590828646	27.818	1.4731	27.797	26.788	28.261	-0.02141					109	51	3	0	0	0	0.037019	3	4767	4721;4767;4811		57.722	23.358	1	943220			12567	8157	7028	7028	16122;16123;16124	16123		887			0.009695410200151855
GVMSPPLSR	9	Oxidation (M)	_GVM(Oxidation (M))SPPLSR_		GVM(1)SPPLSR		GVM(76)SPPLSR	0	0	1		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2524719238281	2	480.252577	958.490601	-0.089113	-4.2797E-05	-0.062462	-2.9997E-05	-0.15157	-7.2794E-05	480.2526132958583	27.753	1.6012	27.742	26.681	28.282	-0.01156					118	56	3	0	0	0	0.012386	2	4768	4718;4768		75.761	35.811	1	860550			12568	8157	7028	7028	16125;16126	16126		887			0.009695410200151855
GVMTLIYFLLF	11	Unmodified	_GVMTLIYFLLF_					0	0	0			REV__nc|ENSG00000254769|Q8NGN8|OR4A4P	REV__nc|ENSG00000254769|Q8NGN8|OR4A4P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.2341613769531	3	439.582282	1315.72502	-0.069287	-3.0457E-05	-0.0058838	-2.5864E-06	-0.07517	-3.3044E-05	439.5824340624061	18.024	0.6648	17.965	17.562	18.227	-0.058485					28	21	2	0	0	0	0.33182	1	1712	1712		5.4027	0.68679	1	58589	+		12569	19154	7029	7029	16127	16127					0.07978419055848462
GVMTVLIKR	9	Oxidation (M)	_GVM(Oxidation (M))TVLIKR_		GVM(1)TVLIKR		GVM(150)TVLIKR	0	0	1		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8157958984375	2	516.815344	1031.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.971	1	28.971	28.471	29.471	0								0	0	0	7.9636E-11	1	5123	5123		149.91	60.96	1				12570	2285	7030	7030	16128	16128		282			0.10159252876246683
GVMTVLIKR	9	Oxidation (M)	_GVM(Oxidation (M))TVLIKR_		GVM(1)TVLIKR		GVM(180)TVLIKR	0	0	1		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.816162109375	2	516.815344	1031.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.107	1	29.107	28.607	29.607	0								0	0	0	1.0207E-16	1	5165	5165		176.84	53.387	1				12571	2285	7030	7030	16129	16129		282			0.10159252876246683
GVMTVLIKR	9	Oxidation (M)	_GVM(Oxidation (M))TVLIKR_		GVM(1)TVLIKR		GVM(150)TVLIKR	0	0	1		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.816162109375	2	516.815344	1031.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.129	1	29.129	28.629	29.629	0								0	0	0	7.9636E-11	1	5172	5172		149.91	60.96	1				12572	2285	7030	7030	16130	16130		282			0.10159252876246683
GVMTVLIKR	9	Oxidation (M)	_GVM(Oxidation (M))TVLIKR_		GVM(1)TVLIKR		GVM(130)TVLIKR	0	0	1		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8155517578125	2	516.815344	1031.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.29	1	29.29	28.79	29.79	0								0	0	0	1.2188E-06	1	5221	5221		129.77	47.882	1				12573	2285	7030	7030	16131	16131		282			0.10159252876246683
GVMTVLIKR	9	Oxidation (M)	_GVM(Oxidation (M))TVLIKR_		GVM(1)TVLIKR		GVM(86)TVLIKR	0	0	1		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8153686523438	2	516.815344	1031.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.435	1	29.435	28.935	29.935	0								0	0	0	0.0060707	1	5265	5265		86.332	23.759	1				12574	2285	7030	7030	16132	16132		282			0.10159252876246683
GVMTVLIKR	9	Oxidation (M)	_GVM(Oxidation (M))TVLIKR_		GVM(1)TVLIKR		GVM(50)TVLIKR	0	0	1		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8154907226562	2	516.815344	1031.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.626	1	29.626	29.126	30.126	0								0	0	0	0.08777	1	5323	5323		49.554	11.379	1				12575	2285	7030	7030	16133	16133		282			0.10159252876246683
GVMTVLIKR	9	Oxidation (M)	_GVM(Oxidation (M))TVLIKR_		GVM(1)TVLIKR		GVM(150)TVLIKR	0	0	1		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.8158569335938	2	516.815344	1031.61614	0.28752	0.0001486	-0.044559	-2.3029E-05	0.24296	0.00012557	516.8157964071178	28.996	1.4964	29.009	28.706	30.202	0.012266					156	51	5	0	0	0	4.3881E-05	5	5112	5112;5161;5202;5248;5299		149.91	60.96	1	19959000			12576	2285	7030	7030	16134;16135;16136;16137;16138	16134		282			0.10159252876246683
GVMTVLIKR	9	Oxidation (M)	_GVM(Oxidation (M))TVLIKR_		GVM(1)TVLIKR		GVM(150)TVLIKR	0	0	1		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.8157958984375	2	516.815344	1031.61614	0.1112	5.7471E-05	0.11844	6.1212E-05	0.22964	0.00011868	516.8159044921902	29.014	1.5373	29.027	28.699	30.236	0.013474					182	53	5	0	0	0	4.3881E-05	5	5108	5108;5156;5206;5250;5303		149.91	60.96	1	18158000			12577	2285	7030	7030	16139;16140;16141;16142;16143	16139		282			0.10159252876246683
GVNDAPALK	9	Unmodified	_GVNDAPALK_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000196296|O14983|ATP2A1;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2	nc|ENSG00000074370|Q93084-4|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7455139160156	2	442.745442	883.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.393	1	25.362	24.862	25.862	-0.031408								0	0	0	0.1768	1	4037	4037		28.495	13.913	1				12578	1020	7031	7031	16144	16144					0.029932118633723803
GVNDSPALK	9	Unmodified	_GVNDSPALK_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;ENSG00000105675|ENST00000262623|ATP4A;ENST00000418334.5_1_1:160144048-160152563:+|nuORF;ENSG00000132681|ENST00000368081|ATP1A4;ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A	nc|ENSG00000163399|P05023-3|ATP1A1;ENST00000418334.5_1_1:160144048-160152563:+|nuORF;ENSG00000075673|ENST00000381946|ATP12A	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7101135253906	2	450.742899	899.471246	0.094095	4.2413E-05	0.73043	0.00032924	0.82452	0.00037165	450.743230435795	22.176	0.28624	22.176	22.045	22.331	0					14	9	2	0	0	0	0.24636	1	3063	3063		16.149	4.5088	1	36614			12579	5675;1052;3658	7032	7032	16145	16145					0.017489080007521807
GVNENRTI	8	Unmodified	_GVNENRTI_					0	0	0		ENSG00000079557|ENST00000226355|AFM	ENSG00000079557|ENST00000226355|AFM	ENSG00000079557|ENST00000226355|AFM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.2716064453125	2	451.738148	901.461744	0.32166	0.00014531	3.055	0.0013801	3.3767	0.0015254	451.73971064492946	49.446	0.4825	49.446	49.218	49.701	0					26	17	2	0	0	0	0.30503	1	11398	11398		30.225	12.09	1	174980			12580	1137	7033	7033	16146	16146					0.007071397152458303
GVNKTRPQ	8	Unmodified	_GVNKTRPQ_					0	0	0		chr20:33813278-33848467|232|15.38|0.73|4.4|+|2|TE_info:L2a,L2a_dup162084,L2,LINE,donor,-,33812866,33813278|None,CHMP4B|1	chr20:33813278-33848467|232|15.38|0.73|4.4|+|2|TE_info:L2a,L2a_dup162084,L2,LINE,donor,-,33812866,33813278|None,CHMP4B|1	chr20:33813278-33848467|232|15.38|0.73|4.4|+|2|TE_info:L2a,L2a_dup162084,L2,LINE,donor,-,33812866,33813278|None,CHMP4B|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7101135253906	2	450.256508	898.498464	0.042222	1.9011E-05	1.0634	0.00047879	1.1056	0.0004978	450.2564006161388	22.511	0.63251	22.511	22.076	22.708	0					28	21	2	0	0	0	0.34319	1	3063	3063		5.7604	1.0044	1	77385			12581	156	7034	7034	16147	16147					0.04515436331791989
GVNLFAGK	8	Unmodified	_GVNLFAGK_					0	0	0		ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A;SCN1A|p.A1622Pfs*3|1|0.23|ENSG00000144285|chr2:165992415-165992415|A/-|frameshift_variant;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;SCN9A|p.M1532*|1|0.27|ENSG00000169432|chr2:166204135-166204135|T/-|frameshift_variant;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;ENSG00000185313|ENST00000449082|SCN10A	ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;SCN9A|p.M1532*|1|0.27|ENSG00000169432|chr2:166204135-166204135|T/-|frameshift_variant;ENSG00000185313|ENST00000449082|SCN10A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2311096191406	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.768	1	14.663	14.163	15.163	-0.10466								0	0	0	0.35014	1	827	827		14.582	5.2343	1				12582	7910;5071;377;7417;4573;6358;7525	7035	7035	16148	16148					0.039341480428561226
GVNMAFNV	8	Unmodified	_GVNMAFNV_					0	0	0			REV__ENST00000565143.1_1_15:72491993-72493046:-|nuORF	REV__ENST00000565143.1_1_15:72491993-72493046:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.25286865234375	2	426.207638	850.400723	-0.45944	-0.00019582	-3.513	-0.0014973	-3.9724	-0.0016931	426.20604355550057	12.942	0.28409	12.874	12.763	13.047	-0.067496					13	9	3	0	0	0	0.344	1	272	272		2.5775	0.51773	1	14426	+		12583	13688	7036	7036	16149	16149					-0.030460885885531752
GVNMKLITFCW	11	Unmodified	_GVNMKLITFCW_					0	0	0		ENST00000381344.7_1_10:1087344-1087389:-|nuORF	ENST00000381344.7_1_10:1087344-1087389:-|nuORF	ENST00000381344.7_1_10:1087344-1087389:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.8906555175781	3	437.891122	1310.65154	-0.26598	-0.00011647	-0.31162	-0.00013646	-0.5776	-0.00025293	437.89103632411985	14.853	0.55641	14.788	14.485	15.041	-0.064414					44	19	3	0	0	0	0.33346	1	909	909		0.50596	0.23694	1	155460			12584	9998	7037	7037	16150	16150					0.008635473417371031
GVNSQKGK	8	Unmodified	_GVNSQKGK_					0	0	0		ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.54522705078125	2	409.229959	816.445365	-0.12598	-5.1554E-05	0.28199	0.0001154	0.15601	6.3846E-05	409.23005363590306	17.24	0.39327	17.122	16.993	17.386	-0.11739					20	13	2	0	0	0	0.34247	1	1649	1649		4.756	0	1	36679			12585	4141	7038	7038	16151	16151					0.0298005854914436
GVPANAVTL	9	Unmodified	_GVPANAVTL_					0	0	0		F2RL2|p.L344Ffs*5|1|0.03|ENSG00000164220|chr5:76617678-76617679|-/C|frameshift_variant;nc|ENSG00000164220|O00254-2|F2RL2;ENSG00000164220|ENST00000296641|F2RL2	F2RL2|p.L344Ffs*5|1|0.03|ENSG00000164220|chr5:76617678-76617679|-/C|frameshift_variant	F2RL2|p.L344Ffs*5|1|0.03|ENSG00000164220|chr5:76617678-76617679|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.7216796875	2	421.242535	840.470518	0.0405	1.706E-05	1.1415	0.00048085	1.182	0.00049791	421.2419553852935	24.472	0.4043	24.399	24.207	24.612	-0.072559					15	13	2	0	0	0	0.26145	1	3827	3827		2.0598	0	1	29542			12586	5813	7039	7039	16152	16152					0.04390113351723812
GVPARRRR	8	Unmodified	_GVPARRRR_					0	0	0		ENST00000223145.9_1_7:8008821-8009403:+|nuORF	ENST00000223145.9_1_7:8008821-8009403:+|nuORF	ENST00000223145.9_1_7:8008821-8009403:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2369384765625	2	484.304659	966.594764	0.076318	3.6961E-05	1.5326	0.00074224	1.6089	0.0007792	484.3057237166115	26.225	0.3849	26.186	25.985	26.37	-0.038671					27	13	3	0	0	0	0.34434	1	4242	4242		0.79363	0.10326	1	72863			12587	8838	7040	7040	16153	16153					0.11013048682411863
GVPERGRSRF	10	Unmodified	_GVPERGRSRF_					0	0	0		ENST00000412997.5_1_3:20227443-20227779:-|nuORF	ENST00000412997.5_1_3:20227443-20227779:-|nuORF	ENST00000412997.5_1_3:20227443-20227779:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.80859375	2	580.817796	1159.62104	0.20443	0.00011874	3.1493	0.0018292	3.3537	0.0019479	580.8193961428142	44	0.26673	44	43.849	44.115	0					11	9	2	0	0	0	0.19885	1	9736	9736		32.786	5.902	1	188090			12588	10283	7041	7041	16154	16154					0.047612730632408784
GVPFLSQR	8	Unmodified	_GVPFLSQR_					0	0	0		L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|90|3|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|90|3|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|90|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.28875732421875	2	452.255977	902.497401	-0.24881	-0.00011253	-3.9012	-0.0017643	-4.15	-0.0018769	452.2543107831077	12.702	0.21429	12.635	12.548	12.763	-0.067496					8	6	2	0	0	0	0.34297	1	236	236		6.3541	2.0249	1	12620			12589	12477	7042	7042	16155	16155					0.042252219628949206
GVPKQVTL	8	Unmodified	_GVPKQVTL_					0	0	0		Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|25|1|sense	Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|25|1|sense	Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|25|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.57598876953125	2	421.260728	840.506903	0.19903	8.3844E-05	0.30715	0.00012939	0.50618	0.00021323	421.26099749001145	38.718	0.83379	38.817	38.35	39.183	0.098904					38	29	2	0	0	0	0.34185	1	8083	8083		10.183	0	1	195100			12590	12379	7043	7043	16156	16156					0.08026990248424681
GVPLDPRTMWA	11	Unmodified	_GVPLDPRTMWA_					0	0	0			REV__ENSG00000124491|ENST00000264870|F13A1	REV__ENSG00000124491|ENST00000264870|F13A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5592346191406	3	414.881502	1241.62268	-0.068409	-2.8382E-05	1.666	0.00069118	1.5976	0.0006628	414.882288520948	13.43	0.41488	13.331	13.129	13.544	-0.099291					34	14	4	0	0	0	0.33149	1	456	456		2.4348	0.18206	1	180250	+		12591	15235	7044	7044	16157	16157					0.0115314603697243
GVPNKVTV	8	Unmodified	_GVPNKVTV_					0	0	0			REV__nc|ENSG00000134571|Q14896-2|MYBPC3	REV__nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.8874206542969	2	407.245078	812.475603	-0.4043	-0.00016465	-0.61445	-0.00025023	-1.0187	-0.00041488	407.2447189802208	13.809	0.24959	13.705	13.513	13.763	-0.10466					10	8	2	0	0	0	0.344	1	481	481		2.5775	0.27475	1	12703	+		12592	15685	7045	7045	16158	16158					0.061864172143259566
GVPNKVTV	8	Unmodified	_GVPNKVTV_					0	0	0			REV__nc|ENSG00000134571|Q14896-2|MYBPC3	REV__nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	407.245078	812.475603	-0.37572	-0.00015301	-0.94079	-0.00038313	-1.3165	-0.00053614	407.2445402024151	13.788	0.17056	13.722	13.632	13.802	-0.066067	0.0088067	-7.8444E-05	NaN	2.5775	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9946	+		12593	15685	7045	7045							0.061864172143259566
GVPQTRLH	8	Unmodified	_GVPQTRLH_					0	0	0			REV__ENST00000534634.5_1_11:71164311-71166159:+|nuORF	REV__ENST00000534634.5_1_11:71164311-71166159:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.5795593261719	2	454.259051	906.503549	0.022105	1.0041E-05	0.39556	0.00017969	0.41767	0.00018973	454.25916633910055	26.203	0.81732	26.165	25.902	26.72	-0.038671					47	28	3	0	0	0	0.34046	1	4273	4273		9.3474	0	1	227100	+		12594	22055	7046	7046	16159	16159					0.04655740194402824
GVPSLVAGGSP	11	Unmodified	_GVPSLVAGGSP_					0	0	0		ENSG00000198894|ENST00000361786|CIPC	ENSG00000198894|ENST00000361786|CIPC	ENSG00000198894|ENST00000361786|CIPC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2848205566406	2	470.758549	939.502546	0.22936	0.00010798	-0.63019	-0.00029667	-0.40083	-0.00018869	470.7581968227969	23.48	0.67482	23.441	23.09	23.765	-0.038927					41	23	2	0	0	0	0.3239	1	3498	3498		17.113	1.2657	1	65735			12595	8153	7047	7047	16160	16160					0.03037481034857592
GVPWGDVRRW	10	Unmodified	_GVPWGDVRRW_					0	0	0			REV__nc|ENSG00000048028|Q96RU2-3|USP28	REV__nc|ENSG00000048028|Q96RU2-3|USP28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.9084777832031	3	409.884235	1226.63087	0.16441	6.7389E-05	-3.0389	-0.0012456	-2.8744	-0.0011782	409.88315925707235	17.155	0.38163	17.094	16.887	17.269	-0.060429					24	13	3	0	0	0	0.32137	1	1483	1483		1.7423	0.14999	1	38840	+		12596	13547	7048	7048	16161	16161					0.026624610685985317
GVPWTLHTWL	10	Unmodified	_GVPWTLHTWL_					0	0	0		nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3;nc|ENSG00000151136|A6QL63-5|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	nc|ENSG00000151136|A6QL63-2|ABTB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.56524658203125	3	403.885353	1208.63423	-0.4003	-0.00016168	-0.29367	-0.00011861	-0.69397	-0.00028029	403.88504641187444	35.499	0.7375	35.499	35.17	35.907	0					42	26	3	0	0	0	0.31911	1	7031	7031		6.6304	0.84694	1	223740			12597	4939	7049	7049	16162	16162					0.03825711122590292
GVQEPGVFISK	11	Unmodified	_GVQEPGVFISK_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.80859375	2	580.819138	1159.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.975	1	44.053	43.553	44.553	0.077515								0	0	0	0.2353	1	9705	9705		29.291	8.8378	1				12598	7211	7050	7050	16163	16163					0.05029683677526009
GVQGFQEFLEK	11	Unmodified	_GVQGFQEFLEK_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C;nc|ENSG00000184083|Q9NX05-2|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.8544921875	2	641.327328	1280.6401	0.60228	0.00038626	-0.24685	-0.00015831	0.35542	0.00022794	641.3270859278824	59.114	0.30097	59.1	58.977	59.278	-0.014271					16	10	2	0	0	0	0.32683	1	14365	14365		11.631	2.0874	1	132430			12599	7427	7051	7051	16164	16164					0.011007648435906958
GVQIPLFFLF	10	Unmodified	_GVQIPLFFLF_					0	0	0		OR8B8|p.F85Lfs*3|1|0.26|ENSG00000197125|chr11:124440831-124440831|A/-|frameshift_variant;ENSG00000197125|ENST00000642064|OR8B8	OR8B8|p.F85Lfs*3|1|0.26|ENSG00000197125|chr11:124440831-124440831|A/-|frameshift_variant	OR8B8|p.F85Lfs*3|1|0.26|ENSG00000197125|chr11:124440831-124440831|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.3719482421875	2	590.841885	1179.66922	0.40063	0.00023671	-0.85516	-0.00050526	-0.45453	-0.00026856	590.8411071960842	38.323	0.44774	38.42	38.202	38.65	0.097527					28	15	2	0	0	0	0.318	1	7927	7927		7.2892	0	1	296250			12600	7932	7052	7052	16165	16165					0.0865695393056285
GVQKILHG	8	Unmodified	_GVQKILHG_					0	0	0		ENST00000411980.1_1_2:98823421-98823919:+|nuORF	ENST00000411980.1_1_2:98823421-98823919:+|nuORF	ENST00000411980.1_1_2:98823421-98823919:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.7747802734375	2	426.25852	850.502486	-0.18426	-7.8541E-05	0.71486	0.00030472	0.5306	0.00022617	426.2588774349653	34.082	0.75583	34.149	33.739	34.495	0.066704					41	26	2	0	0	0	0.34247	1	6745	6745		4.756	0	1	162840			12601	10273	7053	7053	16166	16166					0.07125525825517798
GVQLARTMQMQ	11	Unmodified	_GVQLARTMQMQ_					0	0	0			REV__ENST00000469185.5_2_6:26476432-26476498:+|nuORF	REV__ENST00000469185.5_2_6:26476432-26476498:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5774230957031	3	421.549647	1261.62711	-0.13345	-5.6256E-05	-2.437	-0.0010273	-2.5705	-0.0010836	421.54846499792666	15.85	0.16247	15.787	15.729	15.892	-0.062947					8	5	2	0	0	0	0.33236	1	1173	1173		4.4062	1.3339	1	20303	+		12602	21336	7054	7054	16167	16167					0.006762871882301624
GVQLIEKEPIF	11	Unmodified	_GVQLIEKEPIF_					0	0	0			REV__nc|ENSG00000080546|Q9Y6P5|SESN1	REV__nc|ENSG00000080546|Q9Y6P5|SESN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.2386474609375	3	424.911456	1271.71254	0.055622	2.3634E-05	0.57474	0.00024421	0.63036	0.00026785	424.91157912740755	36.351	1.2664	36.351	35.719	36.985	0					66	45	2	0	0	0	0.39244	1	7476	7476		12.228	12.228	1	477590	+		12603	13888	7055	7055	16168	16168					0.08755098917163195
GVQLIEKEPIF	11	Unmodified	_GVQLIEKEPIF_					0	0	0			REV__nc|ENSG00000080546|Q9Y6P5|SESN1	REV__nc|ENSG00000080546|Q9Y6P5|SESN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.91180419921875	3	424.911456	1271.71254	0.055222	2.3464E-05	0.42599	0.00018101	0.48121	0.00020447	424.91156162310034	36.284	1.1272	36.367	35.682	36.809	0.082359					56	40	2	0	0	0	0.37728	1	7339	7339		14.218	0	1	574140	+		12604	13888	7055	7055	16169	16169					0.08755098917163195
GVQLIEKEPIF	11	Unmodified	_GVQLIEKEPIF_					0	0	0			REV__nc|ENSG00000080546|Q9Y6P5|SESN1	REV__nc|ENSG00000080546|Q9Y6P5|SESN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.2386474609375	3	424.911456	1271.71254	0.055222	2.3464E-05	0.42599	0.00018101	0.48121	0.00020447	424.91156162310034	36.284	1.1272	36.367	35.682	36.809	0.082359					56	40	2	0	0	0	0.32774	1	7399	7399		13.519	2.6197	1	574140	+		12605	13888	7055	7055	16170	16170					0.08755098917163195
GVQLQTFFL	9	Unmodified	_GVQLQTFFL_					0	0	0			REV__ENSG00000185000|ENST00000528718|DGAT1	REV__ENSG00000185000|ENST00000528718|DGAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3136596679688	2	526.792392	1051.57023	0.64248	0.00033846	0.20291	0.00010689	0.8454	0.00044535	526.7924000090862	57.215	1.1879	57.215	56.61	57.798	0					93	43	4	0	0	0	0.24913	1	13913	13913		12.532	0	1	1730500	+		12606	18347	7056	7056	16171	16171					0.046509309656585174
GVQLSITKK	9	Unmodified	_GVQLSITKK_					0	0	0		ENST00000357182.8_1_1:35496249-35497473:-|nuORF;ENST00000373333.1_1_1:35496252-35497272:-|nuORF	ENST00000357182.8_1_1:35496249-35497473:-|nuORF	ENST00000357182.8_1_1:35496249-35497473:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.3056335449219	2	487.305667	972.596781	0.21256	0.00010358	-0.0052774	-2.5717E-06	0.20729	0.00010101	487.3055164617158	25.108	0.4257	25.108	24.902	25.328	0					30	14	3	0	0	0	0.30064	1	3968	3968		8.7454	5.1489	1	106030			12607	9632	7057	7057	16172	16172					0.10938619856972309
GVQLSITKK	9	Unmodified	_GVQLSITKK_					0	0	0		ENST00000357182.8_1_1:35496249-35497473:-|nuORF;ENST00000373333.1_1_1:35496252-35497272:-|nuORF	ENST00000357182.8_1_1:35496249-35497473:-|nuORF	ENST00000357182.8_1_1:35496249-35497473:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.30621337890625	2	487.305667	972.596781	0.097688	4.7604E-05	0.19625	9.5632E-05	0.29394	0.00014324	487.3057188331322	25.136	0.42575	25.08	24.888	25.314	-0.055931					29	14	3	0	0	0	0.29638	1	4006	4006		9.3831	9.3831	1	126120			12608	9632	7057	7057	16173	16173					0.10938619856972309
GVQLSITKK	9	Unmodified	_GVQLSITKK_					0	0	0		ENST00000357182.8_1_1:35496249-35497473:-|nuORF;ENST00000373333.1_1_1:35496252-35497272:-|nuORF	ENST00000357182.8_1_1:35496249-35497473:-|nuORF	ENST00000357182.8_1_1:35496249-35497473:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.30548095703125	2	487.305667	972.596781	-0.12123	-5.9075E-05	0.20272	9.8787E-05	0.081492	3.9711E-05	487.3056829239676	25.139	0.48809	25.108	24.89	25.378	-0.031408					33	16	3	0	0	0	0.28225	1	3967	3967		11.495	7.8982	1	113660			12609	9632	7057	7057	16174	16174					0.10938619856972309
GVQSRRRQKK	10	Unmodified	_GVQSRRRQKK_					0	0	0		ENST00000519065.5_1_6:114281178-114292295:-|nuORF;ENST00000368632.6_1_6:114281140-114292298:-|nuORF	ENST00000519065.5_1_6:114281178-114292295:-|nuORF	ENST00000519065.5_1_6:114281178-114292295:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.56292724609375	3	414.921571	1241.74288	0.078172	3.2435E-05	1.0446	0.00043344	1.1228	0.00046587	414.92207467474066	15.709	0.35003	15.599	15.436	15.786	-0.10981					17	11	2	0	0	0	0.32051	1	1127	1127		1.9064	0	1	22938			12610	9761	7058	7058	16175	16175					0.13168315145594534
GVRATGRTRWS	11	Unmodified	_GVRATGRTRWS_					0	0	0		ENST00000480687.5_1_3:49761070-49761346:-|nuORF;ENST00000308375.10_1_3:49761070-49761346:-|nuORF	ENST00000480687.5_1_3:49761070-49761346:-|nuORF	ENST00000480687.5_1_3:49761070-49761346:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.91424560546875	3	416.230294	1245.66905	-0.21103	-8.7836E-05	2.565	0.0010676	2.3539	0.00097978	416.232230852709	15.978	0.9338	15.978	15.471	16.405	0					88	32	4	0	0	0	0.39234	1	1258	1258		6.6235	0	1	245630			12611	9291	7059	7059	16176	16176					0.0560434698327299
GVRDFIDLDKV	11	Unmodified	_GVRDFIDLDKV_					0	0	0			REV__ENSG00000110917|ENST00000228506|MLEC	REV__ENSG00000110917|ENST00000228506|MLEC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.7752380371094	3	426.23471	1275.6823	0.22693	9.6724E-05	1.1701	0.00049876	1.3971	0.00059548	426.5697831618118	34.076	0.33172	34.076	33.916	34.247	0					18	11	2	0	0	0	0.3325	1	6655	6655		2.2527	0.66045	1	128090	+		12612	14692	7060	7060	16177	16177					0.0554874025197023
GVRDQPGQHVK	11	Unmodified	_GVRDQPGQHVK_					0	0	0		ENST00000480060.5_1_6:31117401-31125946:-|nuORF	ENST00000480060.5_1_6:31117401-31125946:-|nuORF	ENST00000480060.5_1_6:31117401-31125946:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.2107238769531	3	407.554666	1219.64217	-0.097605	-3.9779E-05	-0.52028	-0.00021204	-0.61788	-0.00025182	407.5541817575201	17.35	0.15578	17.35	17.296	17.452	0					7	5	2	0	0	0	0.33149	1	1593	1593		4.4062	2.1534	1	11692			12613	11000	7061	7061	16178	16178					0.04113238372065098
GVRGAEPPER	10	Unmodified	_GVRGAEPPER_					0	0	0		ENST00000426882.5_1_6:30294318-30294846:-|nuORF	ENST00000426882.5_1_6:30294318-30294846:-|nuORF	ENST00000426882.5_1_6:30294318-30294846:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.283447265625	2	534.283254	1066.55196	0.091736	4.9013E-05	0.31892	0.00017039	0.41066	0.00021941	534.2828701897614	99.117	1.7874	99.117	98.405	100.19	0					553	222	3	0	0	0	0.35231	1	26535	26535		12.241	1.4167	1	846820			12614	10425	7062	7062	16179	16179					0.021341890436588073
GVRGAEPPER	10	Unmodified	_GVRGAEPPER_					0	0	0		ENST00000426882.5_1_6:30294318-30294846:-|nuORF	ENST00000426882.5_1_6:30294318-30294846:-|nuORF	ENST00000426882.5_1_6:30294318-30294846:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2826538085938	2	534.283254	1066.55196	0.11822	6.3161E-05	0.26094	0.00013941	0.37915	0.00020258	534.2828086271509	98.95	1.6655	99.001	98.473	100.14	0.050888					522	217	3	0	0	0	0.36015	2	26417	26417;26543		10.8	2.8894	1	1120300			12615	10425	7062	7062	16180;16181	16180					0.021341890436588073
GVRGAEPPER	10	Unmodified	_GVRGAEPPER_					0	0	0		ENST00000426882.5_1_6:30294318-30294846:-|nuORF	ENST00000426882.5_1_6:30294318-30294846:-|nuORF	ENST00000426882.5_1_6:30294318-30294846:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7860717773438	2	534.283254	1066.55196	0.4155	0.00022199	-0.36498	-0.000195	0.050513	2.6988E-05	534.2824463840578	99.044	1.6295	99.037	98.573	100.2	-0.0069046					454	208	3	0	0	0	0.35231	1	26580	26580		12.241	1.4167	1	948530			12616	10425	7062	7062	16182	16182					0.021341890436588073
GVRGNPVL	8	Unmodified	_GVRGNPVL_					0	0	0		nc|ENSG00000012061|P07992-4|ERCC1	nc|ENSG00000012061|P07992-4|ERCC1	nc|ENSG00000012061|P07992-4|ERCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.88037109375	2	406.24287	810.471186	-0.12391	-5.034E-05	0.53144	0.00021589	0.40752	0.00016555	406.24297386088404	24.694	1.1388	24.638	24.344	25.482	-0.055931					83	39	4	0	0	0	0.3225	1	3786	3786		15.768	5.5848	1	444220			12617	12563	7063	7063	16183	16183					0.05836952791401018
GVRGNPVL	8	Unmodified	_GVRGNPVL_					0	0	0		nc|ENSG00000012061|P07992-4|ERCC1	nc|ENSG00000012061|P07992-4|ERCC1	nc|ENSG00000012061|P07992-4|ERCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.8806457519531	2	406.24287	810.471186	-0.29552	-0.00012005	0.69578	0.00028266	0.40027	0.00016261	406.2430249855126	24.644	0.95082	24.612	24.344	25.294	-0.031408					82	32	3	0	0	0	0.33995	1	3772	3772		15.768	1.1865	1	458260			12618	12563	7063	7063	16184	16184					0.05836952791401018
GVRPPAPSL	9	Unmodified	_GVRPPAPSL_					0	0	0		ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.2818298339844	2	447.263802	892.513051	0.002436	1.0895E-06	0.31456	0.00014069	0.317	0.00014178	447.26390389754823	38.469	0.52118	38.469	38.269	38.79	0					33	18	2	0	0	0	0.13898	1	8049	8049		29.082	3.6823	1	258120			12619	4064	7064	7064	16185	16185					0.06249508479936594
GVRPVSGDL	9	Unmodified	_GVRPVSGDL_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.5701599121094	2	450.250892	898.48723	0.11404	5.1345E-05	0.088009	3.9626E-05	0.20204	9.0971E-05	450.25098679457494	30.997	0.53116	30.997	30.753	31.284	0					22	18	2	0	0	0	0.20381	1	5717	5717		18.373	7.5492	1	74603			12620	6771	7065	7065	16186	16186					0.03392614237657199
GVRPVSGDL	9	Unmodified	_GVRPVSGDL_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.5701904296875	2	450.250892	898.48723	0.084723	3.8146E-05	0.024324	1.0952E-05	0.10905	4.9099E-05	450.25092640437595	30.923	0.35361	30.95	30.758	31.111	0.027157					15	12	2	0	0	0	0.20381	1	5707	5707		18.373	4.467	1	88064			12621	6771	7065	7065	16187	16187					0.03392614237657199
GVRQAGRP	8	Unmodified	_GVRQAGRP_					0	0	0		ENST00000374023.7_2_6:34556733-34556940:-|nuORF	ENST00000374023.7_2_6:34556733-34556940:-|nuORF	ENST00000374023.7_2_6:34556733-34556940:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.7433166503906	2	420.743568	839.472583	0.34924	0.00014694	-1.0317	-0.00043409	-0.68247	-0.00028715	420.7431808892884	20.836	0.67992	20.726	20.525	21.205	-0.11003					40	23	2	0	0	0	0.45169	1	2693	2693		5.2307	0	1	197880			12622	9884	7066	7066	16188	16188					0.04642586880174804
GVRQAGRP	8	Unmodified	_GVRQAGRP_					0	0	0		ENST00000374023.7_2_6:34556733-34556940:-|nuORF	ENST00000374023.7_2_6:34556733-34556940:-|nuORF	ENST00000374023.7_2_6:34556733-34556940:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	420.743568	839.472583	0.054578	2.2963E-05	-0.63994	-0.00026925	-0.58536	-0.00024629	420.74327221627857	20.627	0.71487	20.627	20.423	21.138	0	-0.0434	0.00018651	NaN	5.2307	40	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141370			12623	9884	7066	7066							0.04642586880174804
GVRQAGRP	8	Unmodified	_GVRQAGRP_					0	0	0		ENST00000374023.7_2_6:34556733-34556940:-|nuORF	ENST00000374023.7_2_6:34556733-34556940:-|nuORF	ENST00000374023.7_2_6:34556733-34556940:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	420.743568	839.472583	0.29647	0.00012474	-0.957	-0.00040265	-0.66053	-0.00027792	420.7431543911408	20.711	0.84295	20.658	20.418	21.261	-0.052912	-0.012258	-8.0302E-05	NaN	5.2307	53	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166280			12624	9884	7066	7066							0.04642586880174804
GVRQTTQFL	9	Unmodified	_GVRQTTQFL_					0	0	0			REV__ENSG00000189283|ENST00000492590|FHIT	REV__ENSG00000189283|ENST00000492590|FHIT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.779052734375	2	525.290548	1048.56654	0.45075	0.00023677	-3.0326	-0.001593	-2.5819	-0.0013562	525.2895185912629	24.314	0.2571	24.275	24.049	24.306	-0.038927					10	8	2	0	0	0	0.30064	1	3704	3704		8.7454	0.15213	1	28236	+		12625	18603	7067	7067	16189	16189					0.044202611917853574
GVRRELNNEIL	11	Unmodified	_GVRRELNNEIL_					0	0	0		ENSG00000169992|ENST00000302926|NLGN2	ENSG00000169992|ENST00000302926|NLGN2	ENSG00000169992|ENST00000302926|NLGN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.24871826171875	3	438.249242	1311.7259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.184	1	24.145	23.645	24.645	-0.038927								0	0	0	0.35343	1	3671	3671		7.4771	2.1802	1				12626	6412	7068	7068	16190	16190					0.08250349749141606
GVRRSYTFGLA	11	Unmodified	_GVRRSYTFGLA_					0	0	0		ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-2|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.2423095703125	3	409.559528	1225.65676	-0.12017	-4.9216E-05	3.6311	0.0014872	3.5109	0.0014379	409.89490198996265	15.447	0.3664	15.337	15.151	15.517	-0.10982					30	12	3	0	0	0	0.33287	1	1018	1018		2.8433	0.3448	1	73600			12627	7934	7069	7069	16191	16191					0.05295310520250496
GVSAAFAVK	9	Unmodified	_GVSAAFAVK_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.56298828125	2	425.245078	848.475603	-0.047709	-2.0288E-05	-0.47229	-0.00020084	-0.52	-0.00022113	425.2447600307582	35.66	0.92604	35.66	35.062	35.988	0					53	33	2	0	0	0	0.016005	1	7134	7134		75.761	41.658	1	1148700			12628	1193	7070	7070	16192	16192					0.04530417214323279
GVSAAFAVK	9	Unmodified	_GVSAAFAVK_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.5628967285156	2	425.245078	848.475603	-0.12896	-5.4841E-05	-0.24112	-0.00010253	-0.37008	-0.00015738	425.24491100655825	35.466	0.98765	35.541	34.933	35.921	0.075306					59	35	3	0	0	0	0.0075874	1	7160	7160		62.573	20.478	1	1257500			12629	1193	7070	7070	16193	16193					0.04530417214323279
GVSAAFAVK	9	Unmodified	_GVSAAFAVK_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.5629577636719	2	425.245078	848.475603	-0.38443	-0.00016348	0.068907	2.9302E-05	-0.31553	-0.00013418	425.24502361071626	35.471	1.0525	35.558	34.956	36.009	0.086246					65	37	3	0	0	0	0.050251	1	7108	7108		71.922	37.82	1	1124600			12630	1193	7070	7070	16194	16194					0.04530417214323279
GVSAATFLK	9	Unmodified	_GVSAATFLK_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.2579040527344	2	447.258185	892.501818	0.44376	0.00019847	-0.47634	-0.00021305	-0.032582	-1.4573E-05	447.257840438189	44.58	0.78609	44.58	44.255	45.041	0					56	28	3	0	0	0	0.000385	1	9882	9882		125.53	100.13	1	1422700			12631	7428	7071	7071	16195	16195					0.051266863857904355
GVSAATFLK	9	Unmodified	_GVSAATFLK_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.25787353515625	2	447.258185	892.501818	0.33231	0.00014863	-0.48746	-0.00021802	-0.15514	-6.9389E-05	447.2578294810652	44.289	0.83258	44.357	44.147	44.979	0.068569					61	30	3	0	0	0	2.8826E-05	1	9825	9825		137.42	104.64	1	1529500			12632	7428	7071	7071	16196	16196					0.051266863857904355
GVSAATFLK	9	Unmodified	_GVSAATFLK_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.25799560546875	2	447.258185	892.501818	0.28784	0.00012874	-0.41269	-0.00018458	-0.12485	-5.5839E-05	447.25785497920447	44.239	0.97758	44.314	44.094	45.072	0.075047					66	35	3	0	0	0	0.000385	1	9799	9799		125.53	92.743	1	1459500			12633	7428	7071	7071	16197	16197					0.051266863857904355
GVSEGQFR	8	Unmodified	_GVSEGQFR_					0	0	0		nc|ENSG00000126070|Q9H9G7-2|AGO3;ENSG00000126070|ENST00000373191|AGO3	nc|ENSG00000126070|Q9H9G7-2|AGO3	nc|ENSG00000126070|Q9H9G7-2|AGO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.16119384765625	2	440.219591	878.42463	-0.096599	-4.2525E-05	0.55046	0.00024232	0.45386	0.0001998	440.2198602631969	18.7	0.62265	18.582	18.295	18.918	-0.11739					31	21	2	0	0	0	0.344	1	1965	1965		2.5775	0	1	32711			12634	3256	7072	7072	16198	16198					-0.019445318305315595
GVSEVNGMMK	10	2 Oxidation (M)	_GVSEVNGM(Oxidation (M))M(Oxidation (M))K_		GVSEVNGM(1)M(1)K		GVSEVNGM(96)M(96)K	0	0	2		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2442626953125	2	542.244092	1082.47363	0.18978	0.0001029	-0.1273	-6.9025E-05	0.062481	3.388E-05	542.2441006685619	15.177	0.69866	15.177	14.981	15.679	0					57	23	4	0	0	0	0.0041921	1	965	965		96.367	70.967	1	250380			12635	62	7073	7073	16199	16199		4;5			-0.06430747648096258
GVSEVNGMMK	10	2 Oxidation (M)	_GVSEVNGM(Oxidation (M))M(Oxidation (M))K_		GVSEVNGM(1)M(1)K		GVSEVNGM(86)M(86)K	0	0	2		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2443237304688	2	542.244092	1082.47363	0.31371	0.00017011	-0.25926	-0.00014058	0.054447	2.9523E-05	542.2440252954357	15.351	0.65769	15.241	15.01	15.668	-0.10981					61	22	4	0	0	0	0.0066037	1	1008	1008		86.332	60.933	1	267180			12636	62	7073	7073	16200	16200		4;5			-0.06430747648096258
GVSEVNGMMK	10	2 Oxidation (M)	_GVSEVNGM(Oxidation (M))M(Oxidation (M))K_		GVSEVNGM(1)M(1)K		GVSEVNGM(100)M(100)K	0	0	2		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2442626953125	2	542.244092	1082.47363	0.28501	0.00015455	-0.23998	-0.00013013	0.045031	2.4418E-05	542.2440301013703	15.337	0.63078	15.273	15.069	15.7	-0.064413					46	20	3	0	0	0	0.0035533	1	1008	1008		100.09	74.691	1	328780			12637	62	7073	7073	16201	16201		4;5			-0.06430747648096258
GVSGLTGEL	9	Unmodified	_GVSGLTGEL_					0	0	0		nc|ENSG00000152208|O43424-2|GRID2;ENSG00000152208|ENST00000282020|GRID2	nc|ENSG00000152208|O43424-2|GRID2	nc|ENSG00000152208|O43424-2|GRID2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.8722839355469	2	416.724175	831.433798	-1.3453	-0.00056062	0.19121	7.9682E-05	-1.1541	-0.00048094	416.7242512948901	34.68	0.61552	34.68	34.418	35.033	0					31	21	2	0	0	0	0.25622	1	6961	6961		7.2892	0.56607	1	218590			12638	5004	7074	7074	16202	16202					0.011338167351482298
GVSGLTGEL	9	Unmodified	_GVSGLTGEL_					0	0	0		nc|ENSG00000152208|O43424-2|GRID2;ENSG00000152208|ENST00000282020|GRID2	nc|ENSG00000152208|O43424-2|GRID2	nc|ENSG00000152208|O43424-2|GRID2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	416.724175	831.433798	-1.2554	-0.00052315	-0.27963	-0.00011653	-1.535	-0.00063968	416.7240924336129	34.611	0.54677	34.687	34.444	34.99	0.075306	0.024407	0.0002168	NaN	11.64	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271530			12639	5004	7074	7074							0.011338167351482298
GVSGYPTLK	9	Unmodified	_GVSGYPTLK_					0	0	0		ENST00000434494.5_1_15:44038867-44063413:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3	ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENST00000434494.5_1_15:44038867-44063413:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.24334716796875	2	461.255643	920.496732	-0.087749	-4.0475E-05	2.2363	0.0010315	2.1485	0.00099103	461.2567220923628	34.259	0.9175	34.325	33.65	34.567	0.06636					68	32	3	0	0	0	0.090256	1	6658	6658		57.722	15.882	1	821940			12640	6140	7075	7075	16203	16203					0.03330382523188291
GVSGYPTLK	9	Unmodified	_GVSGYPTLK_					0	0	0		ENST00000434494.5_1_15:44038867-44063413:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3	ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENST00000434494.5_1_15:44038867-44063413:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.24334716796875	2	461.255643	920.496732	-0.038479	-1.7749E-05	1.2995	0.00059942	1.2611	0.00058168	461.2566795960177	34.22	1.1115	34.287	33.657	34.769	0.0667					84	39	3	0	0	0	0.13643	1	6651	6651		45.7	15.063	1	788740			12641	6140	7075	7075	16204	16204					0.03330382523188291
GVSIVNAVTYE	11	Unmodified	_GVSIVNAVTYE_					0	0	0			REV__nc|ENSG00000157992|Q53RY4-2|KRTCAP3	REV__nc|ENSG00000157992|Q53RY4-2|KRTCAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.3193359375	2	576.300778	1150.587	0.4019	0.00023161	2.7663	0.0015942	3.1682	0.0018258	576.3014158990171	45.346	0.60014	45.346	45.146	45.746	0					53	21	3	0	0	0	0.28258	1	10136	10136		23.79	3.3362	1	553340	+		12642	16800	7076	7076	16205	16205					0.01773387060939058
GVSKPIGISK	10	Unmodified	_GVSKPIGISK_					0	0	0		ENSG00000196700|ENST00000369888|ZNF512B;ZNF512B|p.K262Qfs*82|1|0.17|ENSG00000196700|chr20:63966391-63966392|-/G|frameshift_variant	ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.3053894042969	2	493.305667	984.596781	0.41522	0.00020483	-1.1978	-0.00059086	-0.78254	-0.00038603	493.30502139603067	21.355	0.40001	21.306	21.092	21.492	-0.049377					24	13	2	0	0	0	0.36015	1	2828	2828		10.8	4.0763	1	118030			12643	7896	7077	7077	16206	16206					0.10386619856990364
GVSKPIGISK	10	Unmodified	_GVSKPIGISK_					0	0	0		ENSG00000196700|ENST00000369888|ZNF512B;ZNF512B|p.K262Qfs*82|1|0.17|ENSG00000196700|chr20:63966391-63966392|-/G|frameshift_variant	ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.305667	984.596781	0.467	0.00023037	-1.358	-0.0006699	-0.891	-0.00043953	493.305046120442	21.274	0.49235	21.274	21.052	21.545	0	-0.021041	-0.00010888	NaN	10.8	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97848			12644	7896	7077	7077							0.10386619856990364
GVSKPIGISK	10	Unmodified	_GVSKPIGISK_					0	0	0		ENSG00000196700|ENST00000369888|ZNF512B;ZNF512B|p.K262Qfs*82|1|0.17|ENSG00000196700|chr20:63966391-63966392|-/G|frameshift_variant	ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	493.305667	984.596781	0.55408	0.00027333	-1.1793	-0.00058176	-0.62522	-0.00030842	493.30507174561353	21.406	0.53531	21.306	21.073	21.608	-0.10034	0.010349	6.7416E-05	NaN	10.8	30	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93259			12645	7896	7077	7077							0.10386619856990364
GVSLMTVPK	9	Oxidation (M)	_GVSLM(Oxidation (M))TVPK_		GVSLM(1)TVPK		GVSLM(120)TVPK	0	0	1		ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.26507568359375	2	474.265153	946.515753	-0.77494	-0.00036753	0.70908	0.00033629	-0.065861	-3.1235E-05	474.26527937591914	34.575	0.8357	34.575	34.135	34.971	0					66	29	3	0	0	0	0.0010463	3	6790	6790;6843;6895		122.18	76.158	1	1065600			12646	9137	7078	7078	16207;16208;16209	16207		924			0.04035595822585947
GVSLMTVPK	9	Oxidation (M)	_GVSLM(Oxidation (M))TVPK_		GVSLM(1)TVPK		GVSLM(130)TVPK	0	0	1		ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.2650451660156	2	474.265153	946.515753	-0.75138	-0.00035635	0.49691	0.00023567	-0.25447	-0.00012068	474.26521249183514	34.489	0.77477	34.565	34.129	34.904	0.075306					63	27	3	0	0	0	0.00014042	3	6748	6748;6792;6842		134.3	75.617	1	1173500			12647	9137	7078	7078	16210;16211;16212	16210		924			0.04035595822585947
GVSLMTVPK	9	Oxidation (M)	_GVSLM(Oxidation (M))TVPK_		GVSLM(1)TVPK		GVSLM(130)TVPK	0	0	1		ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.26507568359375	2	474.265153	946.515753	-0.19869	-9.423E-05	-0.10301	-4.8855E-05	-0.3017	-0.00014309	474.2648805272621	34.435	0.78213	34.512	34.138	34.92	0.077377					70	27	3	0	0	0	0.00014042	3	6735	6735;6780;6832		134.3	84.363	1	1151100			12648	9137	7078	7078	16213;16214;16215	16213		924			0.04035595822585947
GVSPKQSSL	9	Unmodified	_GVSPKQSSL_					0	0	0			REV__nc|ENSG00000069020|O15021-2|MAST4	REV__nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.750244140625	2	451.750724	901.486896	0.0011064	4.9984E-07	0.059068	2.6684E-05	0.060174	2.7184E-05	451.750655525641	22.491	0.94551	22.491	22.252	23.197	0					72	32	3	0	0	0	0.26612	1	3132	3132		13.906	3.1065	1	355680	+		12649	13711	7079	7079	16216	16216					0.03221194517800541
GVSPKQSSL	9	Unmodified	_GVSPKQSSL_					0	0	0			REV__nc|ENSG00000069020|O15021-2|MAST4	REV__nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7507019042969	2	451.750724	901.486896	-0.0043342	-1.958E-06	-0.025174	-1.1373E-05	-0.029509	-1.3331E-05	451.75066585338016	22.624	0.89283	22.537	22.245	23.138	-0.08761					69	31	3	0	0	0	0.29176	1	3173	3173		10.074	1.4806	1	417350	+		12650	13711	7079	7079	16217	16217					0.03221194517800541
GVSSGFLNR	9	Unmodified	_GVSSGFLNR_					0	0	0		nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.77899169921875	2	468.748516	935.482479	-0.70729	-0.00033154	0.42403	0.00019877	-0.28325	-0.00013277	468.7487054997402	35.131	0.38795	35.207	35.017	35.405	0.075306					28	13	3	0	0	0	0.21538	1	7012	7012		26.268	11.43	1	94434			12651	12858	7080	7080	16218	16218					0.01215730094884293
GVSSIFIYH	9	Unmodified	_GVSSIFIYH_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.3002624511719	2	511.768917	1021.52328	0.64327	0.00032921	0.027733	1.4193E-05	0.671	0.0003434	511.76870451131987	56.403	0.61399	56.403	56.158	56.772	0					78	22	5	0	0	0	0.0075168	1	13559	13559		89.427	53.3	1	1667900			12652	7131	7081	7081	16219	16219					0.013380714145114325
GVSSIFIYH	9	Unmodified	_GVSSIFIYH_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.30010986328125	2	511.768917	1021.52328	0.72163	0.00036931	-0.47279	-0.00024196	0.24884	0.00012735	511.7687249198657	56.313	0.73682	56.392	56.146	56.883	0.078674					54	27	3	0	0	0	0.025459	1	13529	13529		77.984	41.857	1	1802800			12653	7131	7081	7081	16220	16220					0.013380714145114325
GVSSIFIYH	9	Unmodified	_GVSSIFIYH_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.30010986328125	2	511.768917	1021.52328	0.92281	0.00047227	-0.059663	-3.0533E-05	0.86315	0.00044173	511.76864249358454	56.527	0.59518	56.508	56.297	56.892	-0.019081					63	21	4	0	0	0	0.0075168	1	13622	13622		77.984	34.126	1	1649400			12654	7131	7081	7081	16221	16221					0.013380714145114325
GVSTAERKS	9	Unmodified	_GVSTAERKS_					0	0	0			REV__ENST00000558036.5_1_15:101821931-101826098:-|nuORF	REV__ENST00000558036.5_1_15:101821931-101826098:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2366027832031	2	467.751256	933.487959	0.60842	0.00028459	2.6514	0.0012402	3.2599	0.0015248	467.75350016040846	33.795	0.72585	33.861	33.538	34.264	0.06636					51	25	3	0	0	0	0.23007	1	6655	6655		19.257	1.1106	1	278920	+		12655	22275	7082	7082	16222	16222					0.018554088867176688
GVSTNISTK	9	Unmodified	_GVSTNISTK_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7480163574219	2	453.748182	905.481811	0.057187	2.5948E-05	-0.23206	-0.0001053	-0.17487	-7.9349E-05	453.74795325214785	19.758	0.55243	19.758	19.493	20.045	0					39	19	3	0	0	0	0.25714	1	2334	2334		15.248	7.093	1	106610			12656	2325	7083	7083	16223	16223					0.02528890655196392
GVSTNISTK	9	Unmodified	_GVSTNISTK_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7482604980469	2	453.748182	905.481811	0.23273	0.0001056	-0.44589	-0.00020232	-0.21316	-9.6719E-05	453.74788265196815	19.932	0.58197	19.816	19.544	20.126	-0.11592					46	19	3	0	0	0	0.25714	1	2379	2379		15.248	7.093	1	107740			12657	2325	7083	7083	16224	16224					0.02528890655196392
GVSTNISTK	9	Unmodified	_GVSTNISTK_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	453.748182	905.481811	0.31172	0.00014144	-0.36183	-0.00016418	-0.050112	-2.2738E-05	453.7478377282061	19.822	0.51923	19.766	19.571	20.09	-0.055691	-0.014023	-1.4424E-05	NaN	15.248	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115470			12658	2325	7083	7083							0.02528890655196392
GVSTPLAGR	9	Unmodified	_GVSTPLAGR_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.91888427734375	2	429.245609	856.476666	-0.24252	-0.0001041	0.39977	0.0001716	0.15725	6.7498E-05	429.24587882397384	27.307	0.50807	27.286	26.985	27.493	-0.021412					25	17	2	0	0	0	0.25323	1	4627	4627		10.074	0	1	63714			12659	4306	7084	7084	16225	16225					0.04268631583227034
GVSTPLAGR	9	Unmodified	_GVSTPLAGR_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	429.245609	856.476666	-0.17158	-7.365E-05	-0.064848	-2.7836E-05	-0.23643	-0.00010149	429.2456909253088	27.27	0.33213	27.258	27.042	27.374	-0.01156	-0.040691	-0.00026555	NaN	10.074	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70850			12660	4306	7084	7084							0.04268631583227034
GVTAGLTKLT	10	Unmodified	_GVTAGLTKLT_					0	0	0		nc|ENSG00000127328|Q96QF0-3|RAB3IP;nc|ENSG00000127328|Q96QF0-4|RAB3IP;ENSG00000127328|ENST00000247833|RAB3IP;nc|ENSG00000127328|Q96QF0|RAB3IP;nc|ENSG00000127328|Q96QF0-5|RAB3IP;nc|ENSG00000127328|Q96QF0-7|RAB3IP;nc|ENSG00000127328|Q96QF0-6|RAB3IP	nc|ENSG00000127328|Q96QF0-3|RAB3IP	nc|ENSG00000127328|Q96QF0-3|RAB3IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2619934082031	2	480.78985	959.565146	0.3288	0.00015808	-0.68071	-0.00032728	-0.35191	-0.00016919	480.7894244919475	20.866	0.37423	20.866	20.678	21.052	0					22	12	2	0	0	0	0.31691	1	2702	2702		9.3831	1.473	1	71755			12661	3312	7085	7085	16226	16226					0.08374627103023613
GVTALVPVS	9	Unmodified	_GVTALVPVS_					0	0	0		nc|ENSG00000177300|Q8N7P3|CLDN22	nc|ENSG00000177300|Q8N7P3|CLDN22	nc|ENSG00000177300|Q8N7P3|CLDN22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2118835449219	2	421.752736	841.490919	-0.359	-0.00015141	-2.8697	-0.0012103	-3.2287	-0.0013617	421.75162072691353	14.238	0.14274	14.238	14.164	14.307	0					6	4	2	0	0	0	0.26145	1	681	681		2.0598	0	1	26747			12662	12856	7086	7086	16227	16227					0.06383284011519663
GVTDLYYILK	10	Unmodified	_GVTDLYYILK_					0	0	0		ENST00000508918.5_1_4:16504706-16675844:-|nuORF;nc|ENSG00000169744|O43679-2|LDB2;nc|ENSG00000169744|O43679-3|LDB2;ENSG00000169744|ENST00000304523|LDB2	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.8319702148438	2	592.831714	1183.64888	0.38183	0.00022636	0.25329	0.00015016	0.63511	0.00037652	592.8316797142174	69.179	0.61559	69.179	68.812	69.428	0					44	21	3	0	0	0	0.0017661	1	17468	17468		110.55	82.924	1	371480			12663	6382	7087	7087	16228	16228					0.06439738480071355
GVTDLYYILK	10	Unmodified	_GVTDLYYILK_					0	0	0		ENST00000508918.5_1_4:16504706-16675844:-|nuORF;nc|ENSG00000169744|O43679-2|LDB2;nc|ENSG00000169744|O43679-3|LDB2;ENSG00000169744|ENST00000304523|LDB2	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.8320922851562	2	592.831714	1183.64888	0.50043	0.00029667	0.188	0.00011145	0.68843	0.00040812	592.8316734833286	69.089	0.5535	69.161	68.88	69.434	0.071938					43	19	3	0	0	0	0.0047411	2	17419	17419;17470		93.166	69.145	1	542960			12664	6382	7087	7087	16229;16230	16229					0.06439738480071355
GVTDLYYILK	10	Unmodified	_GVTDLYYILK_					0	0	0		ENST00000508918.5_1_4:16504706-16675844:-|nuORF;nc|ENSG00000169744|O43679-2|LDB2;nc|ENSG00000169744|O43679-3|LDB2;ENSG00000169744|ENST00000304523|LDB2	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.8318481445312	2	592.831714	1183.64888	0.34966	0.00020729	0.11102	6.5816E-05	0.46068	0.0002731	592.8316069829948	69.173	0.62267	69.153	68.869	69.492	-0.01915					45	21	4	0	0	0	0.00094584	1	17466	17466		121.53	85.407	1	390210			12665	6382	7087	7087	16231	16231					0.06439738480071355
GVTGNRLLQQ	10	Unmodified	_GVTGNRLLQQ_					0	0	0		chr2:200419496-200439125|144|44.17|0.81|5.78|+|2|SPATS2L,None|1	chr2:200419496-200439125|144|44.17|0.81|5.78|+|2|SPATS2L,None|1	chr2:200419496-200439125|144|44.17|0.81|5.78|+|2|SPATS2L,None|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2920532226562	2	543.306729	1084.59891	0.68304	0.0003711	2.2558	0.0012256	2.9388	0.0015967	543.8100282535808	26.914	0.75292	26.903	26.513	27.266	-0.01156					67	26	4	0	0	0	0.31119	1	4496	4496		18.373	4.467	1	222970			12666	148	7088	7088	16232	16232					0.059990485947992056
GVTGPNIEK	9	Unmodified	_GVTGPNIEK_					0	0	0		nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	nc|ENSG00000196141|Q9NUQ6-2|SPATS2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.1641845703125	2	457.750724	913.486896	-0.087276	-3.9951E-05	-0.71367	-0.00032668	-0.80094	-0.00036663	457.7506051840568	24.661	0.40675	24.63	24.456	24.862	-0.031408					13	13	2	0	0	0	0.25123	1	3822	3822		12.241	2.8932	1	38184			12667	12891	7089	7089	16233	16233					0.026691945178072274
GVTGYPRASI	10	Unmodified	_GVTGYPRASI_					0	0	0		ENSG00000181035|ENST00000318596|SLC25A42	ENSG00000181035|ENST00000318596|SLC25A42	ENSG00000181035|ENST00000318596|SLC25A42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.8009338378906	2	510.777274	1019.53999	0.20448	0.00010444	0.3968	0.00020268	0.60128	0.00030712	510.77723283599323	37.994	0.72158	38.092	37.82	38.542	0.097527					48	25	3	0	0	0	0.31039	1	7985	7985		18.146	4.6385	1	261760			12668	7219	7090	7090	16234	16234					0.031005723004682295
GVTKTAETIRY	11	Unmodified	_GVTKTAETIRY_					0	0	0			REV__nc|ENSG00000113889|P01042-3|KNG1	REV__nc|ENSG00000113889|P01042-3|KNG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.5626525878906	3	413.562827	1237.66665	-0.3662	-0.00015145	0.30822	0.00012747	-0.057979	-2.3978E-05	413.56294281319725	39.526	0.8904	39.526	39.242	40.132	0					95	32	4	0	0	0	0.43513	1	8301	8301		6.6235	0.3891	1	1799100	+		12669	14821	7091	7091	16235	16235					0.057324537349586535
GVTNKRAP	8	Unmodified	_GVTNKRAP_					0	0	0			REV__MCAM|p.E313Nfs*16|1|0.22|ENSG00000076706|chr11:119312353-119312353|C/-|frameshift_variant	REV__MCAM|p.E313Nfs*16|1|0.22|ENSG00000076706|chr11:119312353-119312353|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.25653076171875	2	421.745776	841.477	-0.095827	-4.0414E-05	-0.11646	-4.9117E-05	-0.21229	-8.9532E-05	421.74583751312275	16.061	0.28158	15.998	15.866	16.147	-0.062533					12	9	2	0	0	0	0.34319	1	1238	1238		5.7604	0.52976	1	18286	+		12670	22853	7092	7092	16236	16236					0.04992051303088374
GVTPPKPR	8	Unmodified	_GVTPPKPR_					0	0	0			REV__ENST00000565125.5_1_11:68658919-68659369:-|nuORF	REV__ENST00000565125.5_1_11:68658919-68659369:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.7752380371094	2	426.25852	850.502486	-0.039695	-1.6921E-05	0.52233	0.00022265	0.48263	0.00020573	426.25873710743764	34.251	0.58414	34.251	33.916	34.5	0					34	20	2	0	0	0	0.34198	1	6655	6655		3.5965	0	1	160060	+		12671	22352	7093	7093	16237	16237					0.07125525825517798
GVTPVNKL	8	Unmodified	_GVTPVNKL_					0	0	0		nc|ENSG00000227942|Q9BZ68|FRMD8P1	nc|ENSG00000227942|Q9BZ68|FRMD8P1	nc|ENSG00000227942|Q9BZ68|FRMD8P1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.5506591796875	2	414.252903	826.491253	0.09727	4.0294E-05	0.54826	0.00022712	0.64553	0.00026741	414.25312185245014	19.245	0.52046	19.19	18.903	19.423	-0.055693					26	17	2	0	0	0	0.34337	1	2185	2185		5.2307	0	1	42255			12672	12954	7094	7094	16238	16238					0.07106703731381003
GVTRELLSEE	10	Unmodified	_GVTRELLSEE_					0	0	0			REV__ENST00000304905.9_2_17:33749953-33749998:-|nuORF	REV__ENST00000304905.9_2_17:33749953-33749998:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.7601318359375	2	566.79586	1131.57717	0.18628	0.00010559	1.2074	0.00068436	1.3937	0.00078995	566.7960749069158	18.22	0.4004	18.102	17.957	18.358	-0.11739					23	13	2	0	0	0	0.32072	1	1872	1872		2.9952	0.69251	1	37357	+		12673	19847	7095	7095	16239	16239					0.016641990555854136
GVTSHTISKF	10	Unmodified	_GVTSHTISKF_					0	0	0			REV__ENST00000371394.6_1_9:140611085-140686569:+|nuORF	REV__ENST00000371394.6_1_9:140611085-140686569:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2987670898438	2	538.790381	1075.56621	0.32135	0.00017314	-1.8205	-0.00098089	-1.4992	-0.00080775	538.7902055278878	41.297	0.58707	41.387	40.952	41.539	0.090252					41	21	3	0	0	0	0.30586	1	8875	8875		19.257	9.8739	1	564190	+		12674	20397	7096	7096	16240	16240					0.031448414719761786
GVTSQFVSK	9	Unmodified	_GVTSQFVSK_					0	0	0		nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.75848388671875	2	476.758549	951.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.255	1	29.255	28.755	29.755	0								0	0	0	0.11009	1	5210	5210		43.982	23.528	1				12675	6313	7097	7097	16241	16241					0.024854810348642786
GVTSQFVSK	9	Unmodified	_GVTSQFVSK_					0	0	0		nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.7586364746094	2	476.758549	951.502546	0.098735	4.7073E-05	-2.5057	-0.0011946	-2.4069	-0.0011475	476.75850116984975	29.231	0.5277	29.244	29.009	29.536	0.013475					33	18	3	0	0	0	0.10812	1	5194	5194		37.075	14.417	1	135160			12676	6313	7097	7097	16242	16242					0.024854810348642786
GVVARNRA	8	Unmodified	_GVVARNRA_					0	0	0		ENSG00000144535|ENST00000325385|DIS3L2;ENST00000464554.5_1_2:232880330-232952439:+|nuORF;nc|ENSG00000144535|Q8IYB7-4|DIS3L2;nc|ENSG00000144535|Q8IYB7-5|DIS3L2;nc|ENSG00000144535|Q8IYB7-3|DIS3L2;nc|ENSG00000144535|Q8IYB7-2|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7514953613281	2	421.751393	841.488233	-0.019077	-8.0458E-06	-0.002027	-8.5487E-07	-0.021104	-8.9006E-06	421.75133706543886	68.225	3.558	68.225	65.927	69.485	0					213	127	3	0	0	0	0.45169	2	17050	17050;17298		5.2307	0.90143	1	517310			12677	4591	7098	7098	16243;16244	16243					0.06114873397223164
GVVARNRA	8	Unmodified	_GVVARNRA_					0	0	0		ENSG00000144535|ENST00000325385|DIS3L2;ENST00000464554.5_1_2:232880330-232952439:+|nuORF;nc|ENSG00000144535|Q8IYB7-4|DIS3L2;nc|ENSG00000144535|Q8IYB7-5|DIS3L2;nc|ENSG00000144535|Q8IYB7-3|DIS3L2;nc|ENSG00000144535|Q8IYB7-2|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.23822021484375	2	421.751393	841.488233	-0.054418	-2.2951E-05	-0.027423	-1.1566E-05	-0.081841	-3.4517E-05	421.75130562819044	69.97	0.74718	70.036	69.692	70.439	0.066048					48	26	2	0	0	0	0.34319	1	17634	17634		2.5775	0	1	193560			12678	4591	7098	7098	16245	16245					0.06114873397223164
GVVARNRA	8	Unmodified	_GVVARNRA_					0	0	0		ENSG00000144535|ENST00000325385|DIS3L2;ENST00000464554.5_1_2:232880330-232952439:+|nuORF;nc|ENSG00000144535|Q8IYB7-4|DIS3L2;nc|ENSG00000144535|Q8IYB7-5|DIS3L2;nc|ENSG00000144535|Q8IYB7-3|DIS3L2;nc|ENSG00000144535|Q8IYB7-2|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	421.751393	841.488233	-0.083164	-3.5075E-05	0.11325	4.7763E-05	0.030085	1.2688E-05	421.7513538597062	69.985	1.1724	69.985	69.485	70.657	0	-0.025275	4.4043E-05	NaN	2.5775	65	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169820			12679	4591	7098	7098							0.06114873397223164
GVVAVLLTK	9	Unmodified	_GVVAVLLTK_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.29998779296875	2	450.299853	898.585153	0.365	0.00016436	0.069455	3.1275E-05	0.43446	0.00019564	450.2997712083012	51.277	0.53494	51.277	51.03	51.565	0					48	19	3	0	0	0	0.00070271	2	11947	11947;12003		126.57	51.637	1	944700			12680	6378	7099	7099	16246;16247	16246					0.13180422833647754
GVVAVLLTK	9	Unmodified	_GVVAVLLTK_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2998962402344	2	450.299853	898.585153	0.20626	9.2878E-05	0.1269	5.7145E-05	0.33316	0.00015002	450.29980448261756	51.278	0.50262	51.325	51.092	51.595	0.046574					45	18	3	0	0	0	0.00070271	2	11947	11947;12030		126.57	51.637	1	858370			12681	6378	7099	7099	16248;16249	16248					0.13180422833647754
GVVAVLLTK	9	Unmodified	_GVVAVLLTK_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2999267578125	2	450.299853	898.585153	0.3118	0.00014041	0.15929	7.1727E-05	0.47109	0.00021213	450.29984682551446	51.304	0.57273	51.314	51.068	51.641	0.0095673					50	21	3	0	0	0	0.00011048	2	11956	11956;12005		139.14	53.866	1	1060200			12682	6378	7099	7099	16250;16251	16250					0.13180422833647754
GVVAVYLKNKF	11	Unmodified	_GVVAVYLKNKF_					0	0	0			REV__ENST00000465814.5_1_11:72407932-72423670:-|nuORF	REV__ENST00000465814.5_1_11:72407932-72423670:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8697509765625	2	619.368798	1236.72304	0.11984	7.4222E-05	1.672	0.0010356	1.7918	0.0011098	619.3707405203077	91.712	1.9109	91.803	91.166	93.077	0.090675					275	137	3	0	0	0	0.46059	1	24587	24587		3.2813	0.28607	1	768030	+		12683	18455	7100	7100	16252	16252					0.11415126362248884
GVVERCVPSEK	11	Unmodified	_GVVERCVPSEK_					0	0	0		ENSG00000186143|ENST00000335524|PRR30	ENSG00000186143|ENST00000335524|PRR30	ENSG00000186143|ENST00000335524|PRR30	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.289306640625	2	601.81353	1201.61251	0.268	0.00016129	-0.41798	-0.00025155	-0.14998	-9.0258E-05	601.8133828974165	46.273	0.57016	46.338	46.043	46.613	0.065048					33	20	2	0	0	0	0.32344	1	10397	10397		19.626	3.0601	1	508420			12684	7595	7101	7101	16253	16253					0.019765383117146484
GVVGPYVKK	9	Unmodified	_GVVGPYVKK_					0	0	0		ENSG00000079739|ENST00000371084|PGM1;nc|ENSG00000079739|P36871-3|PGM1;nc|ENSG00000079739|P36871-2|PGM1	ENSG00000079739|ENST00000371084|PGM1	ENSG00000079739|ENST00000371084|PGM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.763916015625	2	473.789653	945.564752	0.1211	5.7376E-05	-0.27806	-0.00013174	-0.15696	-7.4366E-05	473.7894738009423	21.931	0.46064	21.882	21.717	22.178	-0.049377					29	16	2	0	0	0	0.24311	1	2976	2976		16.942	7.5949	1	117140			12685	1139	7102	7102	16254	16254					0.08979252173844543
GVVGPYVKK	9	Unmodified	_GVVGPYVKK_					0	0	0		ENSG00000079739|ENST00000371084|PGM1;nc|ENSG00000079739|P36871-3|PGM1;nc|ENSG00000079739|P36871-2|PGM1	ENSG00000079739|ENST00000371084|PGM1	ENSG00000079739|ENST00000371084|PGM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	473.789653	945.564752	0.073638	3.4889E-05	-0.10778	-5.1066E-05	-0.034145	-1.6178E-05	473.78963002727755	21.86	0.31403	21.86	21.731	22.045	0	-0.021339	0.00010311	NaN	21.747	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131510			12686	1139	7102	7102							0.08979252173844543
GVVPFSQRK	9	Unmodified	_GVVPFSQRK_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2957763671875	2	509.295633	1016.57671	0.15351	7.8184E-05	-0.6786	-0.00034561	-0.52509	-0.00026742	509.29545999409777	25.984	0.69885	25.984	25.741	26.44	0					69	24	4	0	0	0	0.10059	2	4205	4205;4252		38.176	15.439	1	820820			12687	1896	7103	7103	16255;16256	16255					0.06908868917037125
GVVPFSQRK	9	Unmodified	_GVVPFSQRK_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.295654296875	2	509.295633	1016.57671	0.066832	3.4037E-05	-0.58988	-0.00030042	-0.52305	-0.00026639	509.29549522965	25.972	0.64923	25.933	25.721	26.37	-0.038671					67	22	4	0	0	0	0.13748	2	4214	4214;4266		32.786	15.673	1	940970			12688	1896	7103	7103	16257;16258	16257					0.06908868917037125
GVVPFSQRK	9	Unmodified	_GVVPFSQRK_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.29571533203125	2	509.295633	1016.57671	0.18	9.1673E-05	-0.55197	-0.00028112	-0.37197	-0.00018944	509.29551722646937	26.003	0.7253	25.981	25.747	26.472	-0.022238					68	25	3	0	0	0	0.13748	2	4223	4223;4273		32.786	10.049	1	838090			12689	1896	7103	7103	16259;16260	16259					0.06908868917037125
GVVTISALSVP	11	Unmodified	_GVVTISALSVP_					0	0	0			REV__chr5:147872353-147901629|153|12.81|0.07|7.57|-|0|TE_info:HERVH-int,HERVH-int_dup2299,ERV1,LTR,acceptor,-,147871299,147872353|None,C5orf46|3	REV__chr5:147872353-147901629|153|12.81|0.07|7.57|-|0|TE_info:HERVH-int,HERVH-int_dup2299,ERV1,LTR,acceptor,-,147871299,147872353|None,C5orf46|3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.8222045898438	2	521.810782	1041.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.258	1	41.348	40.848	41.848	0.090252								0	0	0	0.30959	1	8877	8877		17.113	2.2746	1		+		12690	13203	7104	7104	16261	16261					0.0878718279154782
GVVVDADF	8	Unmodified	_GVVVDADF_					0	0	0			REV__ENST00000530460.1_3_11:76092580-76092709:+|nuORF	REV__ENST00000530460.1_3_11:76092580-76092709:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.22052001953125	2	411.205618	820.396684	0.41432	0.00017037	-3.9793	-0.0016363	-3.565	-0.0014659	411.20304250414364	40.106	0.10314	40.198	40.151	40.254	0.09267					5	3	2	0	0	0	0.34319	1	8533	8533		2.5775	0	1	24461	+		12691	22008	7105	7105	16262	16262					-0.020698548106224735
GVVVDYHTSK	10	Unmodified	_GVVVDYHTSK_					0	0	0			REV__nc|ENSG00000162885|Q8NCR0-2|B3GALNT2	REV__nc|ENSG00000162885|Q8NCR0-2|B3GALNT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7869873046875	2	552.787838	1103.56112	0.5719	0.00031614	-1.9196	-0.0010611	-1.3477	-0.00074497	552.7866930243961	21.296	0.29136	21.186	21.091	21.383	-0.11003					18	9	2	0	0	0	0.34795	1	2807	2807		13.042	0	1	60770	+		12692	17018	7106	7106	16263	16263					0.013485376093285595
GVVVDYHTSK	10	Unmodified	_GVVVDYHTSK_					0	0	0			REV__nc|ENSG00000162885|Q8NCR0-2|B3GALNT2	REV__nc|ENSG00000162885|Q8NCR0-2|B3GALNT2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	552.787838	1103.56112	0.44241	0.00024456	-1.8486	-0.0010219	-1.4062	-0.0007773	552.7866020615969	21.156	0.62756	21.156	20.973	21.601	0	-0.014501	-0.00014867	NaN	13.042	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59408	+		12693	17018	7106	7106							0.013485376093285595
GVVVDYHTSK	10	Unmodified	_GVVVDYHTSK_					0	0	0			REV__nc|ENSG00000162885|Q8NCR0-2|B3GALNT2	REV__nc|ENSG00000162885|Q8NCR0-2|B3GALNT2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	552.787838	1103.56112	0.5719	0.00031614	-1.9196	-0.0010611	-1.3477	-0.00074497	552.7866930243961	21.296	0.29136	21.186	21.091	21.383	-0.11003	0.015845	-0.00022716	NaN	13.042	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60770	+		12694	17018	7106	7106							0.013485376093285595
GVYESGPRK	9	Unmodified	_GVYESGPRK_					0	0	0		ENST00000489982.1_1_10:98363615-98369622:-|nuORF;nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;ENSG00000155629|ENST00000339364|PIK3AP1	ENST00000489982.1_1_10:98363615-98369622:-|nuORF	ENST00000489982.1_1_10:98363615-98369622:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.25640869140625	2	496.761623	991.508694	0.084811	4.2131E-05	1.1132	0.000553	1.198	0.00059513	496.76223307259005	14.261	0.30913	14.261	14.086	14.395	0					16	10	2	0	0	0	0.26031	1	653	653		3.5965	1.5367	1	42760			12695	5185	7107	7107	16264	16264					0.012599992663922421
GVYESGPRK	9	Unmodified	_GVYESGPRK_					0	0	0		ENST00000489982.1_1_10:98363615-98369622:-|nuORF;nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;ENSG00000155629|ENST00000339364|PIK3AP1	ENST00000489982.1_1_10:98363615-98369622:-|nuORF	ENST00000489982.1_1_10:98363615-98369622:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	496.761623	991.508694	0.077035	3.8268E-05	1.9594	0.00097334	2.0364	0.0010116	496.7624945287286	14.384	0.34675	14.279	14.049	14.396	-0.10466	0.0014499	0.00033336	NaN	3.5965	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36396			12696	5185	7107	7107							0.012599992663922421
GVYESGPRK	9	Unmodified	_GVYESGPRK_					0	0	0		ENST00000489982.1_1_10:98363615-98369622:-|nuORF;nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;ENSG00000155629|ENST00000339364|PIK3AP1	ENST00000489982.1_1_10:98363615-98369622:-|nuORF	ENST00000489982.1_1_10:98363615-98369622:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	496.761623	991.508694	0.019792	9.8317E-06	1.6303	0.00080986	1.6501	0.0008197	496.76249828301525	14.36	0.32903	14.293	14.098	14.427	-0.066068	0.015759	6.413E-06	NaN	3.5965	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39709			12697	5185	7107	7107							0.012599992663922421
GVYGDVQRVK	10	Unmodified	_GVYGDVQRVK_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000117569|Q9UKA9-2|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8090209960938	2	560.809105	1119.60366	0.14264	7.9995E-05	0.065437	3.6698E-05	0.20808	0.00011669	560.8090382379776	26.172	0.80114	26.172	25.9	26.701	0					67	27	4	0	0	0	0.0046086	2	4246	4246;4292		93.938	68.539	1	612750			12698	440;12674	7108	7108	16265;16266	16265					0.04863932737566756
GVYGDVQRVK	10	Unmodified	_GVYGDVQRVK_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000117569|Q9UKA9-2|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8090209960938	2	560.809105	1119.60366	0.18655	0.00010462	0.002964	1.6622E-06	0.18952	0.00010628	560.8089540413933	26.163	0.82075	26.124	25.871	26.692	-0.038671					69	26	4	0	0	0	0.016475	2	4255	4255;4305		75.571	55.156	1	644630			12699	440;12674	7108	7108	16267;16268	16267					0.04863932737566756
GVYGDVQRVK	10	Unmodified	_GVYGDVQRVK_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000117569|Q9UKA9-2|PTBP2	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.80908203125	2	560.809105	1119.60366	0.29145	0.00016345	-0.041117	-2.3059E-05	0.25033	0.00014039	560.8090196837247	26.308	0.7607	26.286	25.97	26.73	-0.022236					60	25	3	0	0	0	0.022191	2	4285	4285;4335		69.338	46.812	1	604900			12700	440;12674	7108	7108	16269;16270	16269					0.04863932737566756
GVYGSFASK	9	Unmodified	_GVYGSFASK_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.2456970214844	2	458.232168	914.449782	0.024042	1.1017E-05	0.04581	2.0991E-05	0.069852	3.2008E-05	458.23203069081507	30.864	0.68987	30.864	30.619	31.309	0					52	24	3	0	0	0	0.26612	1	5728	5728		13.906	1.3745	1	620180			12701	5158	7109	7109	16271	16271					-0.010864770279567892
GVYGSFASK	9	Unmodified	_GVYGSFASK_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2458190917969	2	458.232168	914.449782	-0.018446	-8.4526E-06	0.23014	0.00010546	0.2117	9.7007E-05	458.23207596058035	30.879	0.71935	30.907	30.665	31.385	0.027946					55	25	3	0	0	0	0.24467	1	5729	5729		17.113	4.5813	1	651760			12702	5158	7109	7109	16272	16272					-0.010864770279567892
GVYGSFASK	9	Unmodified	_GVYGSFASK_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	458.232168	914.449782	0.024042	1.1017E-05	0.04581	2.0991E-05	0.069852	3.2008E-05	458.23203069081507	30.864	0.68987	30.864	30.619	31.309	0	-0.021534	-6.4687E-05	NaN	17.113	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	620180			12703	5158	7109	7109							-0.010864770279567892
GVYGSFASK	9	Unmodified	_GVYGSFASK_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	458.232168	914.449782	-0.018446	-8.4526E-06	0.23014	0.00010546	0.2117	9.7007E-05	458.23207596058035	30.879	0.71935	30.907	30.665	31.385	0.027946	0.021534	0.00010425	NaN	17.113	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	651760			12704	5158	7109	7109							-0.010864770279567892
GVYKRLTMFI	10	Unmodified	_GVYKRLTMFI_					0	0	0		ENSG00000090857|ENST00000288050|PDPR;nc|ENSG00000090857|Q8NCN5-2|PDPR	ENSG00000090857|ENST00000288050|PDPR	ENSG00000090857|ENST00000288050|PDPR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.2794494628906	3	409.902126	1226.68455	-0.08462	-3.4686E-05	0.10429	4.2748E-05	0.019669	8.0623E-06	409.9019567121709	18.956	0.47089	18.839	18.614	19.084	-0.11739					26	16	2	0	0	0	0.32122	1	2118	2118		2.086	0.17963	1	49205			12705	1388	7110	7110	16273	16273					0.08027497456123456
GVYQVSGLHNK	11	Unmodified	_GVYQVSGLHNK_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.320068359375	2	601.319837	1200.62512	0.3685	0.00022158	0.060259	3.6235E-05	0.42876	0.00025782	601.3195022757083	26.497	0.51726	26.497	26.242	26.759	0					36	17	3	0	0	0	0.062106	1	4383	4383		49.742	30.38	1	160530			12706	1129	7111	7111	16274	16274					0.03283317766295113
GVYQVSGLHNK	11	Unmodified	_GVYQVSGLHNK_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.320068359375	2	601.319837	1200.62512	0.41105	0.00024717	-0.15229	-9.1575E-05	0.25876	0.0001556	601.3197087507937	26.48	0.45683	26.441	26.235	26.692	-0.038671					36	15	3	0	0	0	0.24585	2	4402	4349;4402		27.088	18.933	1	150080			12707	1129	7111	7111	16275;16276	16276					0.03283317766295113
GVYQVSGLHNK	11	Unmodified	_GVYQVSGLHNK_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.3199462890625	2	601.319837	1200.62512	0.508	0.00030547	-0.41428	-0.00024911	0.093728	5.636E-05	601.3194423138721	26.516	0.43357	26.494	26.328	26.762	-0.022238					32	14	3	0	0	0	0.023517	1	4396	4396		60.899	34.631	1	188830			12708	1129	7111	7111	16277	16277					0.03283317766295113
GVYSFQFNK	9	Unmodified	_GVYSFQFNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;ENST00000525031.2_1_12:94817522-94817669:-|nuORF	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2720336914062	2	545.271824	1088.5291	0.58559	0.00031931	0.26358	0.00014372	0.84918	0.00046303	545.2718809230521	48.642	0.49475	48.642	48.417	48.912	0					45	17	3	0	0	0	0.00014042	1	11192	11192		134.3	84.363	1	2010500			12709	1057	7112	7112	16278	16278					-0.011628300738038888
GVYSFQFNK	9	Unmodified	_GVYSFQFNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;ENST00000525031.2_1_12:94817522-94817669:-|nuORF	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2723388671875	2	545.271824	1088.5291	0.83363	0.00045455	0.36696	0.00020009	1.2006	0.00065465	545.2718126003108	48.708	0.57309	48.753	48.416	48.989	0.044891					56	20	3	0	0	0	6.1526E-05	2	11176	11129;11176		147.06	112.96	1	1880000			12710	1057	7112	7112	16279;16280	16280					-0.011628300738038888
GVYSFQFNK	9	Unmodified	_GVYSFQFNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;ENST00000525031.2_1_12:94817522-94817669:-|nuORF	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2726440429688	2	545.271824	1088.5291	0.56777	0.00030959	0.34545	0.00018836	0.91321	0.00049795	545.2719120338054	49.249	0.6837	49.294	48.961	49.645	0.044891					92	24	5	0	0	0	0.03069	1	11241	11241		60.074	22.1	1	5142100			12711	1057	7112	7112	16281	16281					-0.011628300738038888
GVYSFQFNK	9	Unmodified	_GVYSFQFNK_					0	0	0		ENSG00000076067|ENST00000262031|RBMS2;ENST00000525031.2_1_12:94817522-94817669:-|nuORF	ENSG00000076067|ENST00000262031|RBMS2	ENSG00000076067|ENST00000262031|RBMS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2720947265625	2	545.271824	1088.5291	0.70208	0.00038282	0.27409	0.00014945	0.97617	0.00053228	545.2717497833971	48.546	0.64569	48.578	48.309	48.954	0.032043					62	23	4	0	0	0	0.0019475	1	11146	11146		110.67	84.407	1	1777400			12712	1057	7112	7112	16282	16282					-0.011628300738038888
GVYYATAYWMP	11	Unmodified	_GVYYATAYWMP_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.91363525390625	3	441.202242	1320.5849	0.24364	0.00010749	1.0901	0.00048097	1.3338	0.00058846	441.2028231476924	20.609	0.36884	20.609	20.514	20.883	0					14	12	2	0	0	0	0.33326	1	2619	2619		1.4551	0.67859	1	37310			12713	2995	7113	7113	16283	16283					-0.06257364948532995
GVYYCATWDR	10	Unmodified	_GVYYCATWDR_					0	0	0		nc|ENSG00000211699|P03979|TRGV3;nc|ENSG00000211697|A0A0B4J1U4|TRGV5;nc|ENSG00000211696|A0A0C4DH27|TRGV8	nc|ENSG00000211699|P03979|TRGV3	nc|ENSG00000211699|P03979|TRGV3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.8983154296875	3	411.850091	1232.52844	-0.36167	-0.00014895	-0.11312	-4.6588E-05	-0.47479	-0.00019554	411.85002310853906	14.08	0.73449	14.08	13.714	14.448	0					37	25	2	0	0	0	0.32162	1	538	538		0.77653	0	1	174750			12714	12923	7114	7114	16284	16284					-0.07851992785185757
GVYYCATWDR	10	Unmodified	_GVYYCATWDR_					0	0	0		nc|ENSG00000211699|P03979|TRGV3;nc|ENSG00000211697|A0A0B4J1U4|TRGV5;nc|ENSG00000211696|A0A0C4DH27|TRGV8	nc|ENSG00000211699|P03979|TRGV3	nc|ENSG00000211699|P03979|TRGV3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.850091	1232.52844	-0.14628	-6.0246E-05	-0.3213	-0.00013233	-0.46758	-0.00019257	411.8499142786708	14.18	0.55593	14.075	13.933	14.489	-0.10466	-0.005253	-4.5681E-05	NaN	0.77653	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273760			12715	12923	7114	7114							-0.07851992785185757
GVYYCATWDR	10	Unmodified	_GVYYCATWDR_					0	0	0		nc|ENSG00000211699|P03979|TRGV3;nc|ENSG00000211697|A0A0B4J1U4|TRGV5;nc|ENSG00000211696|A0A0C4DH27|TRGV8	nc|ENSG00000211699|P03979|TRGV3	nc|ENSG00000211699|P03979|TRGV3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	411.850091	1232.52844	-0.18885	-7.7776E-05	-0.34042	-0.0001402	-0.52927	-0.00021798	411.84991963121837	14.152	0.72721	14.086	13.889	14.616	-0.066068	0.0054186	-6.9311E-05	NaN	0.77653	38	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207420			12716	12923	7114	7114							-0.07851992785185757
GWFDWMMPTL	10	Unmodified	_GWFDWMMPTL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.5243835449219	3	428.524439	1282.55149	-0.059256	-2.5393E-05	0.030835	1.3214E-05	-0.028421	-1.2179E-05	428.52441482498546	43.79	0.55685	43.868	43.599	44.155	0.077518					48	20	3	0	0	0	0.37007	1	9656	9656		8.9762	0	1	667210			12717	8157	7115	7115	16285	16285					-0.07848689992033542
GWLVEQYF	8	Unmodified	_GWLVEQYF_					0	0	0			REV__ENST00000468472.1_1_3:52847439-52852236:-|nuORF	REV__ENST00000468472.1_1_3:52847439-52852236:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.8091430664062	2	521.255643	1040.49673	-0.034915	-1.82E-05	1.1644	0.00060696	1.1295	0.00058876	521.2567545153224	12.812	0.38296	12.745	12.61	12.993	-0.067496					28	12	4	0	0	0	0.34434	1	211	211		0.79363	0	1	60162	+		12718	13594	7116	7116	16286	16286					-0.021896174768244236
GWLVEQYF	8	Unmodified	_GWLVEQYF_					0	0	0			REV__ENST00000468472.1_1_3:52847439-52852236:-|nuORF	REV__ENST00000468472.1_1_3:52847439-52852236:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.255643	1040.49673	0.091647	4.7771E-05	1.9536	0.0010183	2.0452	0.0010661	521.2564487767047	12.789	0.31177	12.789	12.641	12.952	0	0.042179	-6.9281E-05	NaN	0.79363	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66934	+		12719	13594	7116	7116							-0.021896174768244236
GWLVEQYF	8	Unmodified	_GWLVEQYF_					0	0	0			REV__ENST00000468472.1_1_3:52847439-52852236:-|nuORF	REV__ENST00000468472.1_1_3:52847439-52852236:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	521.255643	1040.49673	0.07592	3.9574E-05	2.164	0.001128	2.24	0.0011676	521.2565902938027	12.805	0.31995	12.706	12.549	12.869	-0.099291	-0.040365	0.00015013	NaN	0.79363	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60897	+		12720	13594	7116	7116							-0.021896174768244236
GWRDSLLLKE	10	Unmodified	_GWRDSLLLKE_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.83740234375	2	608.837862	1215.66117	0.2454	0.00014941	-0.2651	-0.0001614	-0.019691	-1.1989E-05	608.8375255550451	105.8	0.92616	105.8	105.37	106.29	0.0031738					349	133	3	0	0	0	0.40262	1	28111	28111		2.9952	2.9952	1	1060400	+		12721	18991	7117	7117	16287	16287					0.061967749431460106
GWRRPRGVAP	10	Unmodified	_GWRRPRGVAP_					0	0	0		ENST00000252136.11_2_22:20104550-20104601:-|nuORF	ENST00000252136.11_2_22:20104550-20104601:-|nuORF	ENST00000252136.11_2_22:20104550-20104601:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3721923828125	2	576.330873	1150.64719	0.048023	2.7677E-05	-0.7271	-0.00041905	-0.67907	-0.00039137	576.330424036459	25.551	0.3363	25.495	25.314	25.65	-0.055931					20	11	2	0	0	0	0.31847	1	4051	4051		6.7232	0	1	66345			12722	8911	7118	7118	16288	16288					0.07789587025376932
GWRSPVGYTL	10	Unmodified	_GWRSPVGYTL_					0	0	0		ENST00000301904.3_1_8:27530062-27530341:+|nuORF	ENST00000301904.3_1_8:27530062-27530341:+|nuORF	ENST00000301904.3_1_8:27530062-27530341:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2987670898438	2	568.298373	1134.58219	0.1113	6.3249E-05	0.032603	1.8528E-05	0.1439	8.1777E-05	568.2983769119096	48.995	1.1267	49.027	48.71	49.837	0.032043					104	40	4	0	0	0	0.21126	1	11338	11338		31.268	0.6318	1	3078700			12723	9229	7119	7119	16289	16289					0.02028547708869155
GWSHLPTC	8	Unmodified	_GWSHLPTC_					0	0	0		nc|ENSG00000134365|Q92496-2|CFHR4;ENSG00000134365|ENST00000608469|CFHR4	nc|ENSG00000134365|Q92496-2|CFHR4	nc|ENSG00000134365|Q92496-2|CFHR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.26947021484375	2	450.705263	899.395972	-0.010065	-4.5361E-06	0.38111	0.00017177	0.37104	0.00016723	450.7052424172806	80.725	0.20239	80.791	80.726	80.929	0.065094					10	7	2	0	0	0	0.344	1	20989	20989		2.5775	0	1	65981			12724	3778	7120	7120	16290	16290					-0.057749727313193944
GWSLVIEMA	9	Unmodified	_GWSLVIEMA_					0	0	0			REV__nc|ENSG00000151136|A6QL63-2|ABTB3	REV__nc|ENSG00000151136|A6QL63-2|ABTB3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.2554016113281	2	503.257328	1004.5001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.914	1	56.993	56.493	57.493	0.078674								0	0	0	0.11822	1	13697	13697		42.095	0.25493	1		+		12725	16527	7121	7121	16291	16291					-0.001966906944517177
GWSVLYTI	8	Unmodified	_GWSVLYTI_					0	0	0		ENST00000242465.3_1_10:70864296-70864419:+|nuORF	ENST00000242465.3_1_10:70864296-70864419:+|nuORF	ENST00000242465.3_1_10:70864296-70864419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7528381347656	2	469.752736	937.490919	0.048399	2.2736E-05	0.37469	0.00017601	0.42309	0.00019875	469.75279768789215	81.822	0.71931	81.822	81.478	82.197	0					56	27	3	0	0	0	0.43043	1	21344	21344		12.532	2.4576	1	631200			12726	8888	7122	7122	16292	16292					0.019672840115276813
GWVSRKPRLL	10	Unmodified	_GWVSRKPRLL_					0	0	0			REV__ENST00000525250.5_1_11:820874-821186:+|nuORF	REV__ENST00000525250.5_1_11:820874-821186:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3701782226562	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.658	1	98.651	98.151	99.151	-0.006897								0	0	0	0.38126	1	26435	26435		1.6526	0.17072	1		+		12727	21949	7123	7123	16293	16293					0.13292484033513574
GWWESVGL	8	Unmodified	_GWWESVGL_					0	0	0			REV__ENST00000581361.5_1_17:16366149-16366512:+|nuORF	REV__ENST00000581361.5_1_17:16366149-16366512:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.226806640625	2	467.226885	932.439217	-0.12085	-5.6463E-05	-0.14096	-6.5861E-05	-0.26181	-0.00012232	467.22659894586974	19.014	0.70063	18.897	18.582	19.283	-0.11739					39	24	2	0	0	0	0.34408	1	2136	2136		2.3027	2.3027	1	64019	+		12728	21367	7124	7124	16294	16294					-0.029704596823762586
GYADIVQLL	9	Unmodified	_GYADIVQLL_					0	0	0		ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2767639160156	2	496.276575	990.538597	0.61157	0.00030351	0.56832	0.00028204	1.1799	0.00058555	496.2763751408744	85.171	1.7245	85.171	84.527	86.251	0					273	65	7	0	0	0	1.8851E-11	7	22367	22317;22367;22410;22456;22503;22555;22631		197.17	89.17	1	7209900			12729	3837	7125	7125	16295;16296;16297;16298;16299;16300;16301	16296					0.04294938211717181
GYADIVQLL	9	Unmodified	_GYADIVQLL_					0	0	0		ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.27685546875	2	496.276575	990.538597	0.5959	0.00029573	0.60879	0.00030213	1.2047	0.00059786	496.2763676872391	85.072	2.6204	85.153	84.101	86.722	0.080879					302	102	7	0	0	0	1.8851E-11	6	22330	22283;22330;22376;22422;22480;22590		197.17	89.17	1	6735700			12730	3837	7125	7125	16302;16303;16304;16305;16306;16307	16303					0.04294938211717181
GYADIVQLL	9	Unmodified	_GYADIVQLL_					0	0	0		ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.27685546875	2	496.276575	990.538597	0.57126	0.0002835	0.68966	0.00034226	1.2609	0.00062577	496.27637494360044	85.148	2.2588	85.136	84.267	86.525	-0.01284					309	88	7	0	0	0	6.7091E-11	5	22355	22310;22355;22404;22452;22573		181.33	77.579	1	6441000			12731	3837	7125	7125	16308;16309;16310;16311;16312	16309					0.04294938211717181
GYADLSKLF	9	Unmodified	_GYADLSKLF_					0	0	0			REV__ENSG00000188984|ENST00000359318|AADACL3	REV__ENSG00000188984|ENST00000359318|AADACL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.26751708984375	2	507.26875	1012.52295	0.52932	0.00026851	-2.2907	-0.001162	-1.7614	-0.00089351	507.26744631617055	85.181	0.4257	85.181	85.015	85.441	0					27	15	2	0	0	0	0.18936	1	22371	22371		32.786	5.1569	1	327130	+		12732	18586	7126	7126	16313	16313					0.017186516946594566
GYADLSKLF	9	Unmodified	_GYADLSKLF_					0	0	0			REV__ENSG00000188984|ENST00000359318|AADACL3	REV__ENSG00000188984|ENST00000359318|AADACL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2676086425781	2	507.26875	1012.52295	0.5094	0.0002584	-1.7249	-0.00087497	-1.2155	-0.00061657	507.2677071917584	85.217	0.47206	85.205	85.036	85.508	-0.01284					31	17	2	0	0	0	0.088443	2	22368	22368;22417		39.95	12.321	1	280020	+		12733	18586	7126	7126	16314;16315	16314					0.017186516946594566
GYADLSKLF	9	Unmodified	_GYADLSKLF_					0	0	0			REV__ENSG00000188984|ENST00000359318|AADACL3	REV__ENSG00000188984|ENST00000359318|AADACL3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	507.26875	1012.52295	0.48891	0.00024801	-1.7351	-0.00088017	-1.2462	-0.00063216	507.2676702063178	85.134	0.48521	85.214	84.998	85.483	0.080887	0.014322	0.00015501	NaN	39.95	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278130	+		12734	18586	7126	7126							0.017186516946594566
GYADLSKLF	9	Unmodified	_GYADLSKLF_					0	0	0			REV__ENSG00000188984|ENST00000359318|AADACL3	REV__ENSG00000188984|ENST00000359318|AADACL3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.26875	1012.52295	0.5094	0.0002584	-1.7249	-0.00087497	-1.2155	-0.00061657	507.2677071917584	85.217	0.47206	85.205	85.036	85.508	-0.01284	0.0044722	0.0001654	NaN	39.95	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280020	+		12735	18586	7126	7126							0.017186516946594566
GYAHLTHLL	9	Unmodified	_GYAHLTHLL_					0	0	0		nc|ENSG00000094631|Q9UBN7-2|HDAC6;ENSG00000094631|ENST00000334136|HDAC6	nc|ENSG00000094631|Q9UBN7-2|HDAC6	nc|ENSG00000094631|Q9UBN7-2|HDAC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.271728515625	2	512.782359	1023.55016	0.28358	0.00014542	0.4517	0.00023162	0.73528	0.00037704	512.7825367515969	43.688	0.24805	43.688	43.519	43.767	0					12	8	2	0	0	0	0.21905	1	9610	9610		23.148	15.238	1	219320			12736	1438	7127	7127	16316	16316					0.03933180025705951
GYAHLTHLL	9	Unmodified	_GYAHLTHLL_					0	0	0		nc|ENSG00000094631|Q9UBN7-2|HDAC6;ENSG00000094631|ENST00000334136|HDAC6	nc|ENSG00000094631|Q9UBN7-2|HDAC6	nc|ENSG00000094631|Q9UBN7-2|HDAC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.27197265625	2	512.782359	1023.55016	0.26445	0.00013561	0.86175	0.00044189	1.1262	0.0005775	512.7828283902002	43.393	0.35906	43.477	43.217	43.576	0.083996					22	12	2	0	0	0	0.18943	1	9538	9538		16.942	0	1	218050			12737	1438	7127	7127	16317	16317					0.03933180025705951
GYAPVEFFL	9	Unmodified	_GYAPVEFFL_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3284301757812	2	521.765843	1041.51713	0.51892	0.00027076	-0.73401	-0.00038298	-0.21508	-0.00011222	521.7661000285176	89.915	0.1038	89.916	89.862	89.966	0.00039673					12	8	2	0	0	0	0.22596	1	23815	23815		21.747	12.399	1	55316			12738	2762	7128	7128	16318	16318					-0.0019644681699446664
GYAPYVNRI	9	Unmodified	_GYAPYVNRI_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7802734375	2	526.779816	1051.54508	0.77961	0.00041068	0.12945	6.8194E-05	0.90907	0.00047888	526.7797345514914	44.763	0.57957	44.763	44.462	45.041	0					49	20	3	0	0	0	0.0085732	1	9950	9950		81.613	43.462	1	1318200			12739	5048	7129	7129	16319	16319					0.021368761630810695
GYAPYVNRI	9	Unmodified	_GYAPYVNRI_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7802734375	2	526.779816	1051.54508	0.64351	0.00033899	-0.089066	-4.6918E-05	0.55444	0.00029207	526.7796348311202	44.555	0.44213	44.624	44.349	44.791	0.068569					39	15	3	0	0	0	0.0085732	1	9889	9889		81.613	43.462	1	1523400			12740	5048	7129	7129	16320	16320					0.021368761630810695
GYAPYVNRI	9	Unmodified	_GYAPYVNRI_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7803955078125	2	526.779816	1051.54508	0.61703	0.00032504	0.18598	9.7971E-05	0.80301	0.00042301	526.7797224334354	44.525	0.57782	44.6	44.257	44.835	0.075047					55	20	4	0	0	0	0.015402	1	9879	9879		71.134	26.727	1	1602400			12741	5048	7129	7129	16321	16321					0.021368761630810695
GYASRFIVI	9	Unmodified	_GYASRFIVI_					0	0	0		ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.808349609375	2	513.292559	1024.57057	0.27698	0.00014217	0.37195	0.00019092	0.64893	0.00033309	513.2927571502606	60.412	0.42712	60.412	60.15	60.577	0					35	15	3	0	0	0	0.014206	1	14763	14763		72.968	48.294	1	2038900			12742	5082	7130	7130	16322	16322					0.05926350685513171
GYASRFIVI	9	Unmodified	_GYASRFIVI_					0	0	0		ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8084716796875	2	513.292559	1024.57057	-0.016147	-8.2879E-06	0.85634	0.00043955	0.84019	0.00043127	513.2929931125018	60.334	0.47374	60.429	60.077	60.55	0.095093					38	17	4	0	0	0	0.018449	2	14765	14713;14765		66.457	34.151	1	1853500			12743	5082	7130	7130	16323;16324	16324					0.05926350685513171
GYASRFIVI	9	Unmodified	_GYASRFIVI_					0	0	0		ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8084106445312	2	513.292559	1024.57057	0.31359	0.00016096	0.33223	0.00017053	0.64581	0.00033149	513.2928236170292	60.424	0.43263	60.413	60.137	60.57	-0.011486					33	15	3	0	0	0	0.037019	2	14748	14748;14793		57.722	35.975	1	2303100			12744	5082	7130	7130	16325;16326	16325					0.05926350685513171
GYAYRRIFQKF	11	Unmodified	_GYAYRRIFQKF_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.5983581542969	3	483.598094	1447.77245	0.49897	0.0002413	-0.0040997	-1.9826E-06	0.49487	0.00023932	483.59801434216945	45.54	0.67867	45.54	45.238	45.917	0					66	24	4	0	0	0	0.35571	2	10196	10196;10252		17.049	10.011	1	650170			12745	5309	7131	7131	16327;16328	16327					0.06647834371051431
GYAYRRIFQKF	11	Unmodified	_GYAYRRIFQKF_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.2535400390625	3	483.598094	1447.77245	0.42785	0.00020691	0.20417	9.8737E-05	0.63202	0.00030565	483.5983283121666	44.999	0.74805	45.075	44.749	45.497	0.07505					70	27	4	0	0	0	0.3322	1	9928	9928		1.2148	0	1	1034900			12746	5309	7131	7131	16329	16329					0.06647834371051431
GYEILGKLLK	10	Unmodified	_GYEILGKLLK_					0	0	0		nc|ENSG00000111799|Q99715-2|COL12A1;ENSG00000111799|ENST00000322507|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2793579101562	2	567.350074	1132.6856	0.33749	0.00019147	-0.59687	-0.00033863	-0.25938	-0.00014716	567.3493908352073	62.373	0.35114	62.364	62.191	62.542	-0.0085526					30	12	4	0	0	0	0.31629	1	15385	15385		6.2058	0.97511	1	155980			12747	2389	7132	7132	16330	16330					0.12456035096647611
GYFETPFSF	9	Unmodified	_GYFETPFSF_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.A356Sfs*2|1|0.41|ENSG00000125386|chr4:2663145-2663146|-/A|frameshift_variant	ENSG00000125386|ENST00000637812|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7456665039062	2	547.745108	1093.47566	0.59163	0.00032406	0.42606	0.00023337	1.0177	0.00055743	547.7451969365167	87.453	0.62888	87.453	87.216	87.844	0					71	30	3	0	0	0	0.12846	1	23104	23104		34.102	21.06	1	306820			12748	3201	7133	7133	16331	16331					-0.06733627576318213
GYFETPFSF	9	Unmodified	_GYFETPFSF_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.A356Sfs*2|1|0.41|ENSG00000125386|chr4:2663145-2663146|-/A|frameshift_variant	ENSG00000125386|ENST00000637812|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.74560546875	2	547.745108	1093.47566	0.62247	0.00034095	0.20358	0.00011151	0.82604	0.00045246	547.745217639729	87.472	0.79877	87.466	87.171	87.97	-0.0056229					97	42	3	0	0	0	0.0017972	1	23048	23048		112.59	87.919	1	533000			12749	3201	7133	7133	16332	16332					-0.06733627576318213
GYFETPFSF	9	Unmodified	_GYFETPFSF_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.A356Sfs*2|1|0.41|ENSG00000125386|chr4:2663145-2663146|-/A|frameshift_variant	ENSG00000125386|ENST00000637812|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	547.745108	1093.47566	0.59161	0.00032405	-0.1076	-5.8938E-05	0.48401	0.00026511	548.2456235469035	87.655	0.25471	87.742	87.716	87.971	0.08709	0.1885	-0.00043622	NaN	112.59	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87056			12750	3201	7133	7133							-0.06733627576318213
GYFGNPQKF	9	Unmodified	_GYFGNPQKF_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.L2219*|1|0.23|ENSG00000053747|chr18:23905559-23905559|C/-|frameshift_variant	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2822265625	2	529.258717	1056.50288	0.63335	0.0003352	0.59033	0.00031244	1.2237	0.00064764	529.2591119034735	45.027	0.51318	45.027	44.802	45.315	0					38	18	3	0	0	0	0.23784	1	9982	9982		13.906	5.9959	1	316630			12751	679	7134	7134	16333	16333					-0.023110992452757273
GYFGNPQKF	9	Unmodified	_GYFGNPQKF_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.L2219*|1|0.23|ENSG00000053747|chr18:23905559-23905559|C/-|frameshift_variant	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2821044921875	2	529.258717	1056.50288	0.65084	0.00034446	1.2844	0.00067978	1.9352	0.0010242	529.2596136035768	44.576	0.37985	44.651	44.556	44.935	0.075047					25	13	3	0	0	0	0.1524	1	9884	9884		39.957	24.11	1	319460			12752	679	7134	7134	16334	16334					-0.023110992452757273
GYGAFLTL	8	Unmodified	_GYGAFLTL_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2389221191406	2	421.226354	840.438155	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.746	1	33.812	33.312	34.312	0.06636								0	0	0	0.35779	1	6580	6580		11.114	0.93107	1				12753	3255	7135	7135	16335	16335					0.011553259487186551
GYGFTTDLF	9	Unmodified	_GYGFTTDLF_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.27386474609375	2	510.737283	1019.46001	0.37408	0.00019106	0.28809	0.00014714	0.66216	0.00033819	510.73732992587213	79.658	0.45634	79.658	79.441	79.897	0					32	17	3	0	0	0	0.24311	1	20709	20709		16.942	4.4107	1	140480			12754	6389	7136	7136	16336	16336					-0.04893914093395324
GYGFTTDLF	9	Unmodified	_GYGFTTDLF_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2737731933594	2	510.737283	1019.46001	0.34319	0.00017528	0.39112	0.00019976	0.73432	0.00037504	510.73746003979187	79.68	0.46983	79.651	79.418	79.888	-0.028931					27	17	2	0	0	0	0.19839	1	20695	20695		28.487	11.4	1	174030			12755	6389	7136	7136	16337	16337					-0.04893914093395324
GYGGGFGNF	9	Unmodified	_GYGGGFGNF_					0	0	0		ENST00000481161.5_1_2:163200677-163213018:+|nuORF;ENST00000479199.1_1_2:163200728-163213435:+|nuORF;ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.1877136230469	2	438.18776	874.360967	0.41796	0.00018315	-0.03799	-1.6647E-05	0.37997	0.0001665	438.1876332620233	58.297	0.87586	58.28	57.953	58.829	-0.0172					67	31	3	0	0	0	7.6375E-05	1	14124	14124		144.66	48.538	1	2104600			12756	2628	7137	7137	16338	16338					-0.08123892267622068
GYGGGFGNF	9	Unmodified	_GYGGGFGNF_					0	0	0		ENST00000481161.5_1_2:163200677-163213018:+|nuORF;ENST00000479199.1_1_2:163200728-163213435:+|nuORF;ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	438.18776	874.360967	0.072886	3.1938E-05	0.33759	0.00014793	0.41048	0.00017987	438.18782003391715	58.111	0.88533	58.111	57.854	58.739	0	-0.019759	6.6865E-05	NaN	144.66	72	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1971500			12757	2628	7137	7137							-0.08123892267622068
GYGGGFGNF	9	Unmodified	_GYGGGFGNF_					0	0	0		ENST00000481161.5_1_2:163200677-163213018:+|nuORF;ENST00000479199.1_1_2:163200728-163213435:+|nuORF;ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	ENST00000481161.5_1_2:163200677-163213018:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	438.18776	874.360967	0.084043	3.6827E-05	0.45718	0.00020033	0.54123	0.00023716	438.1878077676702	57.916	0.81003	58.001	57.714	58.524	0.085617	-0.12944	0.00017167	NaN	144.66	81	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2208600			12758	2628	7137	7137							-0.08123892267622068
GYHSQDRY	8	Unmodified	_GYHSQDRY_					0	0	0		nc|ENSG00000185811|Q13422-6|IKZF1;nc|ENSG00000185811|Q13422-5|IKZF1;nc|ENSG00000185811|Q13422-4|IKZF1;nc|ENSG00000185811|Q13422-3|IKZF1;nc|ENSG00000185811|Q13422-2|IKZF1;nc|ENSG00000185811|Q13422-7|IKZF1;ENSG00000185811|ENST00000331340|IKZF1;nc|ENSG00000123411|Q9H2S9-2|IKZF4;ENST00000551124.5_1_12:56418779-56429112:+|nuORF;ENSG00000123411|ENST00000547167|IKZF4	nc|ENSG00000185811|Q13422-6|IKZF1	nc|ENSG00000185811|Q13422-6|IKZF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7045288085938	2	513.225405	1024.43626	0.12507	6.4187E-05	-0.29047	-0.00014908	-0.1654	-8.4889E-05	513.225200791808	69.589	1.1108	69.567	69.026	70.137	-0.022087					92	39	3	0	0	0	0.34131	1	17739	17739		12.532	12.532	1	446430			12759	3104	7138	7138	16339	16339					-0.07498334807178253
GYIERPQLI	9	Unmodified	_GYIERPQLI_					0	0	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.8086547851562	2	544.808574	1087.60259	0.57237	0.00031183	-0.24824	-0.00013524	0.32413	0.00017659	544.8084347491073	51.452	1.2366	51.452	51.03	52.267	0					137	45	4	0	0	0	5.7257E-07	4	12014	11969;12014;12057;12111		157.8	88.69	1	9608900			12760	5832	7139	7139	16340;16341;16342;16343	16341					0.062297183686723656
GYIERPQLI	9	Unmodified	_GYIERPQLI_					0	0	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.8087768554688	2	544.808574	1087.60259	0.595	0.00032416	-0.29684	-0.00016172	0.29816	0.00016244	544.808405819494	51.429	1.1872	51.475	51.118	52.305	0.046574					118	43	4	0	0	0	0.00019464	3	12013	11967;12013;12059		133.05	80.218	1	9069900			12761	5832	7139	7139	16344;16345;16346	16345					0.062297183686723656
GYIERPQLI	9	Unmodified	_GYIERPQLI_					0	0	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.8087768554688	2	544.808574	1087.60259	0.6068	0.00033059	-0.10399	-5.6654E-05	0.50281	0.00027393	544.8085064102318	51.564	1.3267	51.574	51.094	52.421	0.0095634					154	49	4	0	0	0	7.3453E-05	4	12026	11980;12026;12069;12121		145.13	89.627	1	8675100			12762	5832	7139	7139	16347;16348;16349;16350	16348					0.062297183686723656
GYIESVQHI	9	Unmodified	_GYIESVQHI_					0	0	0		ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2695922851562	2	523.269281	1044.52401	0.59948	0.00031369	-0.072121	-3.7739E-05	0.52736	0.00027595	523.2692234156607	45.067	0.84296	45.067	44.771	45.614	0					79	30	4	0	0	0	0.000385	1	10064	10064		137.42	85.155	1	1256800			12763	3243	7140	7140	16351	16351					0.0035286606357658457
GYIESVQHI	9	Unmodified	_GYIESVQHI_					0	0	0		ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2694091796875	2	523.269281	1044.52401	0.53131	0.00027802	-0.061133	-3.1989E-05	0.47018	0.00024603	523.2692558178139	44.811	0.72031	44.88	44.599	45.319	0.068573					64	25	3	0	0	0	0.00047565	1	9936	9936		118.89	57.537	1	1636300			12764	3243	7140	7140	16352	16352					0.0035286606357658457
GYIESVQHI	9	Unmodified	_GYIESVQHI_					0	0	0		ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	ENSG00000125871|ENST00000377710|MGME1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.26953125	2	523.269281	1044.52401	0.6372	0.00033343	-0.27384	-0.00014329	0.36336	0.00019013	523.2691377316055	44.785	0.72875	44.86	44.556	45.284	0.075047					61	26	3	0	0	0	5.0285E-07	2	9961	9914;9961		160.52	99.159	1	1729100			12765	3243	7140	7140	16353;16354	16354					0.0035286606357658457
GYIFNNCSN	9	Unmodified	_GYIFNNCSN_					0	0	0			REV__ENST00000585357.1_1_19:38780610-38781349:+|nuORF	REV__ENST00000585357.1_1_19:38780610-38781349:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2982177734375	2	516.216192	1030.41783	0.77299	0.00039903	-0.19621	-0.00010129	0.57678	0.00029774	516.2149567203826	56.277	0.40472	56.356	56.17	56.575	0.078674					25	14	2	0	0	0	0.23783	1	13451	13451		12.532	0	1	510010	+		12766	22509	7141	7141	16355	16355					-0.09616212773403277
GYIKGIFGF	9	Unmodified	_GYIKGIFGF_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2769775390625	2	501.276378	1000.5382	0.37372	0.00018734	0.51402	0.00025766	0.88774	0.000445	501.2767249996521	70.666	0.55562	70.666	70.434	70.989	0					37	19	2	0	0	0	0.0061338	2	17913	17913;17963		85.357	56.87	1	1005300			12767	6220	7142	7142	16356;16357	16356					0.037955632825287466
GYIKGIFGF	9	Unmodified	_GYIKGIFGF_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2772521972656	2	501.276378	1000.5382	0.35828	0.0001796	-0.72975	-0.00036581	-0.37147	-0.00018621	501.2766814472112	70.681	0.79044	70.742	70.327	71.117	0.060783					84	28	4	0	0	0	0.017871	2	17895	17895;17945		67.344	44.195	1	993570			12768	6220	7142	7142	16358;16359	16358					0.037955632825287466
GYIKGIFGF	9	Unmodified	_GYIKGIFGF_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2768249511719	2	501.276378	1000.5382	0.42035	0.00021071	-0.59535	-0.00029843	-0.175	-8.7723E-05	501.27663945735645	70.776	0.66604	70.751	70.437	71.103	-0.024872					76	23	4	0	0	0	0.017871	3	17919	17919;17938;17970		67.344	44.195	1	1176300			12769	6220	7142	7142	16360;16361;16362	16360					0.037955632825287466
GYILAIHIV	9	Unmodified	_GYILAIHIV_					0	0	0		ABCA5|p.F235I|1|0.28|ENSG00000154265|chr17:69306810-69306810|A/T|missense_variant	ABCA5|p.F235I|1|0.28|ENSG00000154265|chr17:69306810-69306810|A/T|missense_variant	ABCA5|p.F235I|1|0.28|ENSG00000154265|chr17:69306810-69306810|A/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.8057861328125	2	499.805303	997.596052	0.42129	0.00021057	0.40865	0.00020425	0.82995	0.00041481	499.80546825554285	86.846	0.93438	86.933	86.524	87.459	0.08709					71	39	2	0	0	0	0.21902	1	22925	22925		20.871	1.4322	1	794080			12770	0	7143	7143	16363	16363					0.09715825207933904
GYILEWSGFL	10	Unmodified	_GYILEWSGFL_					0	0	0			REV__nc|ENSG00000137135|Q8N4T4-2|ARHGEF39	REV__nc|ENSG00000137135|Q8N4T4-2|ARHGEF39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.3723754882812	2	592.802957	1183.59136	0.49398	0.00029283	0.13427	7.9594E-05	0.62825	0.00037243	592.8031089926602	88.407	0.52102	88.496	88.269	88.79	0.089195					30	21	2	0	0	0	0.31165	1	23309	23309		15.847	5.0233	1	112020	+		12771	15846	7144	7144	16364	16364					0.006908962745228564
GYILEWSGFL	10	Unmodified	_GYILEWSGFL_					0	0	0			REV__nc|ENSG00000137135|Q8N4T4-2|ARHGEF39	REV__nc|ENSG00000137135|Q8N4T4-2|ARHGEF39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.3724365234375	2	592.802957	1183.59136	0.4678	0.00027731	0.30391	0.00018016	0.77171	0.00045747	592.8031239047241	88.507	0.61268	88.504	88.266	88.879	-0.0028381					37	26	2	0	0	0	0.3156	1	23403	23403		10.824	0	1	123960	+		12772	15846	7144	7144	16365	16365					0.006908962745228564
GYISSAFLF	9	Unmodified	_GYISSAFLF_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.75811767578125	2	502.758018	1003.50148	0.56023	0.00028166	-0.22332	-0.00011227	0.33692	0.00016939	502.75784221880315	84.912	1.1785	84.912	84.584	85.763	0					128	45	4	0	0	0	4.6753E-07	3	22289	22238;22289;22337		161.89	114.97	1	3680600			12773	3569	7145	7145	16366;16367;16368	16367					-0.00012733334040149202
GYISSAFLF	9	Unmodified	_GYISSAFLF_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.75823974609375	2	502.758018	1003.50148	0.55128	0.00027716	-0.17178	-8.6363E-05	0.3795	0.0001908	502.757861201553	84.854	1.368	84.935	84.59	85.958	0.080887					128	52	4	0	0	0	0.00033206	3	22249	22198;22249;22298		131.3	93.147	1	3290700			12774	3569	7145	7145	16369;16370;16371	16370					-0.00012733334040149202
GYISSAFLF	9	Unmodified	_GYISSAFLF_					0	0	0		nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	nc|ENSG00000131471|Q16853-2|AOC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.7581481933594	2	502.758018	1003.50148	0.54503	0.00027402	-0.23578	-0.00011854	0.30925	0.00015548	502.75784939382004	84.92	1.263	84.907	84.581	85.844	-0.01284					138	48	4	0	0	0	4.6753E-07	3	22271	22228;22271;22315		161.89	114.97	1	4202100			12775	3569	7145	7145	16372;16373;16374	16373					-0.00012733334040149202
GYISSLLTL	9	Unmodified	_GYISSLLTL_					0	0	0		nc|ENSG00000106565|Q3YBM2-2|TMEM176B;ENSG00000106565|ENST00000326442|TMEM176B	nc|ENSG00000106565|Q3YBM2-2|TMEM176B	nc|ENSG00000106565|Q3YBM2-2|TMEM176B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.77923583984375	2	483.778951	965.543348	0.46238	0.00022369	0.98466	0.00047636	1.447	0.00070004	483.7792919389856	84.856	0.63317	84.937	84.674	85.308	0.080879					50	24	3	0	0	0	0.0037552	1	22235	22235		96.285	37.606	1	452510			12776	2084	7146	7146	16375	16375					0.059198223544854045
GYITYSIASL	10	Unmodified	_GYITYSIASL_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3;nc|ENSG00000165323|Q8TDW7-2|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7655639648438	2	544.28714	1086.55973	0.62847	0.00034207	0.26999	0.00014695	0.89847	0.00048902	544.2869879988518	51.305	0.3614	51.352	51.142	51.504	0.046577					20	13	2	0	0	0	0.28434	1	11959	11959		19.257	2.1441	1	260590			12777	5950	7147	7147	16376	16376					0.019909035205728287
GYIYVEANK	9	Unmodified	_GYIYVEANK_					0	0	0		SUPT5H|p.Y230N|1|0.26|ENSG00000196235|chr19:39464861-39464861|T/A|missense_variant	SUPT5H|p.Y230N|1|0.26|ENSG00000196235|chr19:39464861-39464861|T/A|missense_variant	SUPT5H|p.Y230N|1|0.26|ENSG00000196235|chr19:39464861-39464861|T/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7725830078125	2	528.771657	1055.52876	0.43529	0.00023017	-0.57382	-0.00030342	-0.13853	-7.3253E-05	528.7715445352787	61.942	0.51076	61.942	61.755	62.266	0					28	18	2	0	0	0	0.21303	1	15239	15239		21.747	2.4897	1	156000			12778	23382	7148	7148	16377	16377					0.00321750206330762
GYKPDFVGF	9	Unmodified	_GYKPDFVGF_					0	0	0		ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2557983398438	2	515.255643	1028.49673	0.30299	0.00015612	0.44323	0.00022838	0.74623	0.0003845	515.2559322635173	57.944	0.52657	57.944	57.743	58.269	0					38	18	3	0	0	0	0.05341	2	14021	14021;14081		51.63	26.956	1	466090			12779	5994	7149	7149	16378;16379	16378					-0.01637617476808373
GYKPDFVGF	9	Unmodified	_GYKPDFVGF_					0	0	0		ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2557373046875	2	515.255643	1028.49673	0.27833	0.00014341	0.16604	8.5553E-05	0.44438	0.00022897	515.2557181400492	57.768	0.48146	57.854	57.63	58.112	0.085621					39	17	3	0	0	0	0.11234	1	13966	13966		43.772	31.241	1	436410			12780	5994	7149	7149	16380	16380					-0.01637617476808373
GYKPDFVGF	9	Unmodified	_GYKPDFVGF_					0	0	0		ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	ENSG00000165704|ENST00000298556|HPRT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.273681640625	2	515.255643	1028.49673	0.37654	0.00019401	0.5153	0.00026551	0.89183	0.00045952	515.2557618024732	58.07	0.53389	58.052	57.821	58.355	-0.0172					45	19	3	0	0	0	0.18936	1	14088	14088		26.268	8.1332	1	454310			12781	5994	7149	7149	16381	16381					-0.01637617476808373
GYLADPAKF	9	Unmodified	_GYLADPAKF_					0	0	0		ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2845764160156	2	491.255643	980.496732	0.43803	0.00021518	0.47199	0.00023187	0.91002	0.00044705	491.2558784636994	48.853	0.58252	48.853	48.636	49.218	0					32	20	2	0	0	0	0.11234	1	11219	11219		51.63	11.181	1	486070			12782	4058	7150	7150	16382	16382					0.005703825231876181
GYLADPAKF	9	Unmodified	_GYLADPAKF_					0	0	0		ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.2845764160156	2	491.255643	980.496732	0.42051	0.00020658	0.33616	0.00016514	0.75667	0.00037172	491.2559166159837	48.906	0.52328	48.951	48.743	49.266	0.044891					32	18	2	0	0	0	0.11234	1	11261	11261		51.63	31.176	1	567130			12783	4058	7150	7150	16383	16383					0.005703825231876181
GYLADPAKF	9	Unmodified	_GYLADPAKF_					0	0	0		ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2835693359375	2	491.255643	980.496732	0.25315	0.00012436	0.34884	0.00017137	0.60199	0.00029573	491.2559424386195	48.874	0.57741	48.906	48.602	49.18	0.032043					34	20	2	0	0	0	0.11234	1	11199	11199		51.63	31.176	1	425960			12784	4058	7150	7150	16384	16384					0.005703825231876181
GYLHGTVVKL	10	Unmodified	_GYLHGTVVKL_					0	0	0			REV__ENST00000555044.5_2_14:74364914-74371672:+|nuORF	REV__ENST00000555044.5_2_14:74364914-74371672:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3399047851562	2	543.818941	1085.62333	0.60182	0.00032728	-0.077226	-4.1997E-05	0.5246	0.00028528	543.8188286565272	52.056	0.70689	52.107	51.846	52.553	0.050575					72	25	4	0	0	0	0.31867	1	12129	12129		18.146	3.3081	1	1845900	+		12785	22242	7151	7151	16385	16385					0.08394308748324875
GYLLFGLGTGF	11	Unmodified	_GYLLFGLGTGF_					0	0	0		nc|ENSG00000164175|Q9UMX9-4|SLC45A2;nc|ENSG00000164175|Q9UMX9-3|SLC45A2;ENSG00000164175|ENST00000296589|SLC45A2	nc|ENSG00000164175|Q9UMX9-4|SLC45A2	nc|ENSG00000164175|Q9UMX9-4|SLC45A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2899780273438	2	572.8055	1143.59645	0.33849	0.00019389	-0.31919	-0.00018284	0.0193	1.1055E-05	572.8053595578133	70.241	0.33345	70.307	70.051	70.384	0.06604					15	11	2	0	0	0	0.32505	1	17750	17750		6.2058	0	1	97492			12786	5804	7152	7152	16386	16386					0.03039200137163789
GYLPLAHVL	9	Unmodified	_GYLPLAHVL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ENSG00000123983|ENST00000357430|ACSL3	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7495422363281	2	491.789653	981.564752	0.52864	0.00025998	-0.53499	-0.0002631	-0.006352	-3.1239E-06	491.78921875924937	64.601	0.43661	64.694	64.5	64.937	0.09288					22	15	2	0	0	0	0.076445	1	16037	16037		56.048	35.177	1	263740			12787	882	7153	7153	16387	16387					0.07323252173853234
GYLPLAHVL	9	Unmodified	_GYLPLAHVL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ENSG00000123983|ENST00000357430|ACSL3	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.74957275390625	2	491.789653	981.564752	0.44399	0.00021835	-0.56377	-0.00027726	-0.11979	-5.8909E-05	491.78927546272206	64.736	0.39999	64.726	64.495	64.895	-0.0095291					24	13	2	0	0	0	0.22431	1	16059	16059		20.871	5.103	1	190670			12788	882	7153	7153	16388	16388					0.07323252173853234
GYLQVFPGL	9	Unmodified	_GYLQVFPGL_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2727966308594	2	497.273835	992.533118	0.6317	0.00031413	-2.1708	-0.0010795	-1.5391	-0.00076535	497.27243514924567	84.514	0.93679	84.514	84.057	84.994	0					44	35	2	0	0	0	0.155	1	22162	22162		30.225	6.2042	1	143770			12789	3491	7154	7154	16389	16389					0.03655259419895174
GYLQVFPGL	9	Unmodified	_GYLQVFPGL_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.2731018066406	2	497.273835	992.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.494	1	84.575	84.075	85.075	0.080452								0	0	0	0.19804	1	22146	22146		23.148	5.0021	1				12790	3491	7154	7154	16390	16390					0.03655259419895174
GYLTEAEKF	9	Unmodified	_GYLTEAEKF_					0	0	0		nc|ENSG00000144455|Q8NBK3-2|SUMF1;nc|ENSG00000144455|Q8NBK3-5|SUMF1;ENSG00000144455|ENST00000272902|SUMF1;nc|ENSG00000144455|Q8NBK3-3|SUMF1	nc|ENSG00000144455|Q8NBK3-2|SUMF1	nc|ENSG00000144455|Q8NBK3-2|SUMF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7715454101562	2	529.263665	1056.51278	0.38272	0.00020256	-3.3414	-0.0017685	-2.9586	-0.0015659	529.2633207339808	48.966	1.3166	48.998	48.232	49.548	0.032043					87	47	3	0	0	0	0.090256	1	11174	11174		57.722	37.268	1	1096000			12791	4587	7155	7155	16391	16391					-0.013219560305742561
GYMEGYYTF	9	Oxidation (M)	_GYM(Oxidation (M))EGYYTF_		GYM(1)EGYYTF		GYM(210)EGYYTF	0	0	1		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.7260131835938	2	573.726058	1145.43756	0.29537	0.00016946	-0.26616	-0.00015271	0.029201	1.6753E-05	573.7258392281686	60.444	0.83666	60.444	60.126	60.962	0					93	30	4	0	0	0	1.8194E-16	3	14780	14734;14780;14832		205.82	173.51	1	7387800			12792	2311	7156	7156	16392;16393;16394	16393		285			-0.12933881553317406
GYMEGYYTF	9	Oxidation (M)	_GYM(Oxidation (M))EGYYTF_		GYM(1)EGYYTF		GYM(210)EGYYTF	0	0	1		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.7259521484375	2	573.726058	1145.43756	0.29355	0.00016842	-0.25361	-0.0001455	0.039947	2.2919E-05	573.7258280058669	60.349	0.81835	60.444	60.105	60.923	0.095093					101	29	4	0	0	0	1.8194E-16	4	14709	14709;14754;14803;14851		205.82	173.51	1	6507600			12793	2311	7156	7156	16395;16396;16397;16398	16395		285			-0.12933881553317406
GYMEGYYTF	9	Oxidation (M)	_GYM(Oxidation (M))EGYYTF_		GYM(1)EGYYTF		GYM(230)EGYYTF	0	0	1		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.7260131835938	2	573.726058	1145.43756	0.4775	0.00027396	-0.39895	-0.00022889	0.078552	4.5067E-05	573.7257825684419	60.473	0.90617	60.461	60.108	61.014	-0.011486					100	33	4	0	0	0	8.2725E-18	4	14798	14751;14798;14851;14900		225.63	193.33	1	7139200			12794	2311	7156	7156	16399;16400;16401;16402	16400		285			-0.12933881553317406
GYMPSASMTRL	11	2 Oxidation (M)	_GYM(Oxidation (M))PSASM(Oxidation (M))TRL_		GYM(1)PSASM(1)TRL		GYM(57)PSASM(57)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.2836303710938	2	623.283748	1244.55294	-0.74701	-0.0004656	0.20419	0.00012727	-0.54283	-0.00033834	623.2839800222264	34.943	1.2722	34.943	34.22	35.492	0					145	45	4	0	0	0	0.036631	6	6840	6784;6840;6886;6944;6992;7042		57.108	44.867	1	501630			12795	1891	7157	7157	16403;16404;16405;16406;16407;16408	16404		228;229			-0.05955100693950044
GYMPSASMTRL	11	2 Oxidation (M)	_GYM(Oxidation (M))PSASM(Oxidation (M))TRL_		GYM(1)PSASM(1)TRL		GYM(44)PSASM(44)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.2828979492188	2	623.283748	1244.55294	-1.1188	-0.00069735	0.30356	0.0001892	-0.81527	-0.00050815	623.2838962152545	34.894	1.3525	34.97	34.129	35.481	0.075306					129	48	4	0	0	0	0.08061	2	6940	6940;6989		44.392	36.236	1	515930			12796	1891	7157	7157	16409;16410	16409		228;229			-0.05955100693950044
GYMPSASMTRL	11	2 Oxidation (M)	_GYM(Oxidation (M))PSASM(Oxidation (M))TRL_		GYM(1)PSASM(1)TRL		GYM(51)PSASM(51)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.283935546875	2	623.283748	1244.55294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.396	1	34.467	33.967	34.967	0.071411								0	0	0	0.064965	1	6778	6778		51.488	32.231	1				12797	1891	7157	7157	16411	16411		228;229			-0.05955100693950044
GYMPSASMTRL	11	2 Oxidation (M)	_GYM(Oxidation (M))PSASM(Oxidation (M))TRL_		GYM(1)PSASM(1)TRL		GYM(71)PSASM(71)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.2844848632812	2	623.283748	1244.55294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.563	1	34.639	34.139	35.139	0.075306								0	0	0	0.0061797	1	6829	6829		70.929	57.023	1				12798	1891	7157	7157	16412	16412		228;229			-0.05955100693950044
GYMPSASMTRL	11	2 Oxidation (M)	_GYM(Oxidation (M))PSASM(Oxidation (M))TRL_		GYM(1)PSASM(1)TRL		GYM(50)PSASM(50)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.2828979492188	2	623.283748	1244.55294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.609	1	34.684	34.184	35.184	0.075306								0	0	0	0.070244	1	6843	6843		49.742	35.836	1				12799	1891	7157	7157	16413	16413		228;229			-0.05955100693950044
GYMPSASMTRL	11	2 Oxidation (M)	_GYM(Oxidation (M))PSASM(Oxidation (M))TRL_		GYM(1)PSASM(1)TRL		GYM(48)PSASM(48)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.7843627929688	2	623.283748	1244.55294	-0.21951	-0.00013681	-0.12919	-8.0519E-05	-0.34869	-0.00021733	623.2836707964352	34.412	0.67295	34.489	34.082	34.755	0.077377					44	23	2	0	0	0	0.069058	1	6821	6821		47.732	35.491	1	534740			12800	1891	7157	7157	16414	16414		228;229			-0.05955100693950044
GYMPSASMTRL	11	2 Oxidation (M)	_GYM(Oxidation (M))PSASM(Oxidation (M))TRL_		GYM(1)PSASM(1)TRL		GYM(55)PSASM(55)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.2835083007812	2	623.283748	1244.55294	-0.69997	-0.00043628	0.3593	0.00022395	-0.34067	-0.00021234	623.2837999390721	34.759	1.303	34.836	34.164	35.467	0.077377					101	46	4	0	0	0	0.043061	2	6974	6925;6974		55.249	43.008	1	514340			12801	1891	7157	7157	16415;16416	16416		228;229			-0.05955100693950044
GYMTQFPTF	9	Oxidation (M)	_GYM(Oxidation (M))TQFPTF_		GYM(1)TQFPTF		GYM(73)TQFPTF	0	0	1		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.2431640625	2	554.244418	1106.47428	0.33862	0.00018768	-1.1414	-0.0006326	-0.80275	-0.00044492	554.2436175417544	67.741	0.5685	67.741	67.479	68.048	0					43	19	3	0	0	0	0.014206	1	17024	17024		72.968	36.841	1	541060			12802	576	7158	7158	16417	16417		65			-0.07469584936757201
GYMTQFPTF	9	Oxidation (M)	_GYM(Oxidation (M))TQFPTF_		GYM(1)TQFPTF		GYM(83)TQFPTF	0	0	1		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.2427978515625	2	554.244418	1106.47428	0.48388	0.00026819	-1.5926	-0.00088271	-1.1088	-0.00061453	554.2434710718474	67.666	0.64999	67.744	67.434	68.084	0.078041					51	22	3	0	0	0	0.0079761	1	16978	16978		82.529	38.671	1	507780			12803	576	7158	7158	16418	16418		65			-0.07469584936757201
GYMTQFPTF	9	Oxidation (M)	_GYM(Oxidation (M))TQFPTF_		GYM(1)TQFPTF		GYM(83)TQFPTF	0	0	1		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2433471679688	2	554.244418	1106.47428	0.22037	0.00012214	-0.98274	-0.00054468	-0.76237	-0.00042254	554.2437053117695	67.775	0.74908	67.758	67.451	68.2	-0.016296					48	26	4	0	0	0	0.0079761	2	17009	17009;17049		82.529	30.261	1	479560			12804	576	7158	7158	16419;16420	16419		65			-0.07469584936757201
GYNVKFDMF	9	Oxidation (M)	_GYNVKFDM(Oxidation (M))F_		GYNVKFDM(1)F		GYNVKFDM(110)F	0	0	1		ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.7576293945312	2	568.757692	1135.50083	0.50577	0.00028766	-0.31062	-0.00017667	0.19515	0.000111	568.7574917586587	54.289	0.497	54.289	53.999	54.496	0					58	17	4	0	0	0	0.0019475	1	12905	12905		110.67	84.407	1	3758000			12805	6176	7159	7159	16421	16421		725			-0.06149896045417336
GYNVKFDMF	9	Oxidation (M)	_GYNVKFDM(Oxidation (M))F_		GYNVKFDM(1)F		GYNVKFDM(80)F	0	0	1		ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.3101196289062	2	568.757692	1135.50083	0.621	0.0003532	-0.5385	-0.00030628	0.0825	4.6922E-05	568.7573446232428	54.737	0.73539	54.737	54.462	55.198	0					78	26	4	0	0	0	0.035405	1	13058	13058		79.596	61.45	1	3382600			12806	6176	7159	7159	16422	16422		725			-0.06149896045417336
GYNVKFDMF	9	Oxidation (M)	_GYNVKFDM(Oxidation (M))F_		GYNVKFDM(1)F		GYNVKFDM(100)F	0	0	1		ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2996215820312	2	568.757692	1135.50083	0.5613	0.00031924	-0.35429	-0.00020151	0.20701	0.00011774	568.7574764654069	54.217	0.47312	54.28	54.01	54.483	0.063206					57	17	4	0	0	0	0.0063009	1	12829	12829		99.755	73.487	1	3696100			12807	6176	7159	7159	16423	16423		725			-0.06149896045417336
GYNVKFDMF	9	Oxidation (M)	_GYNVKFDM(Oxidation (M))F_		GYNVKFDM(1)F		GYNVKFDM(80)F	0	0	1		ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.3104858398438	2	568.757692	1135.50083	0.66204	0.00037654	-0.53128	-0.00030217	0.13076	7.4371E-05	568.757308267758	54.661	0.88052	54.725	54.459	55.339	0.063206					86	32	4	0	0	0	0.035405	1	13026	13026		79.596	63.749	1	3435800			12808	6176	7159	7159	16424	16424		725			-0.06149896045417336
GYNVKFDMF	9	Oxidation (M)	_GYNVKFDM(Oxidation (M))F_		GYNVKFDM(1)F		GYNVKFDM(110)F	0	0	1		ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.757568359375	2	568.757692	1135.50083	0.49744	0.00028292	-0.3685	-0.00020959	0.12894	7.3334E-05	568.7574422291135	54.558	0.50995	54.542	54.224	54.734	-0.015923					59	17	4	0	0	0	0.0019475	1	12959	12959		110.67	84.407	1	3508800			12809	6176	7159	7159	16425	16425		725			-0.06149896045417336
GYNVKFDMF	9	Oxidation (M)	_GYNVKFDM(Oxidation (M))F_		GYNVKFDM(1)F		GYNVKFDM(120)F	0	0	1		ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	ENST00000589115.5_1_19:1105440-1106426:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.6444702148438	2	568.757692	1135.50083	0.61434	0.00034941	-0.70698	-0.0004021	-0.092639	-5.2689E-05	568.7572046554754	54.991	0.67757	54.975	54.734	55.411	-0.015923					74	24	4	0	0	0	0.000775	1	13101	13101		122.18	76.158	1	4516700			12810	6176	7159	7159	16426	16426		725			-0.06149896045417336
GYPALGLLKF	10	Unmodified	_GYPALGLLKF_					0	0	0		ENST00000468586.5_1_1:62149184-62190652:-|nuORF;ENSG00000162604|ENST00000606498|TM2D1;ENST00000488206.5_1_1:62149110-62190652:-|nuORF	ENST00000468586.5_1_1:62149184-62190652:-|nuORF	ENST00000468586.5_1_1:62149184-62190652:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8175048828125	2	539.81841	1077.62227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.806	1	75.775	75.275	76.275	-0.031487								0	0	0	0.0020416	1	19480	19480		88.904	48.455	1				12811	5586	7160	7160	16427	16427					0.0865609437942112
GYPALGLLKF	10	Unmodified	_GYPALGLLKF_					0	0	0		ENST00000468586.5_1_1:62149184-62190652:-|nuORF;ENSG00000162604|ENST00000606498|TM2D1;ENST00000488206.5_1_1:62149110-62190652:-|nuORF	ENST00000468586.5_1_1:62149184-62190652:-|nuORF	ENST00000468586.5_1_1:62149184-62190652:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8177490234375	2	539.81841	1077.62227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.959	1	75.928	75.428	76.428	-0.031487								0	0	0	0.0005714	1	19527	19527		92.822	52.374	1				12812	5586	7160	7160	16428	16428					0.0865609437942112
GYPEVALHF	9	Unmodified	_GYPEVALHF_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.761474609375	2	516.761092	1031.50763	0.32608	0.00016851	0.36764	0.00018998	0.69372	0.00035849	516.7612764000647	62.049	1.4456	62.049	61.623	63.068	0					156	53	5	0	0	0	2.3185E-05	4	15290	15244;15290;15331;15372		153.26	121.15	1	9277300			12813	3034	7161	7161	16429;16430;16431;16432	16430					-0.006862151025416097
GYPEVALHF	9	Unmodified	_GYPEVALHF_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	516.761092	1031.50763	0.1262	6.5216E-05	0.58283	0.00030118	0.70903	0.0003664	516.7613763706959	62.033	1.288	62.025	61.675	62.963	-0.0085526	-0.012236	9.7052E-05	NaN	153.26	140	47	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9986100			12814	3034	7161	7161							-0.006862151025416097
GYPGRQYYF	9	Unmodified	_GYPGRQYYF_					0	0	0		ENSG00000144468|ENST00000392062|RHBDD1;nc|ENSG00000144468|Q8TEB9-2|RHBDD1;ENST00000493526.1_1_2:227773206-227860235:+|nuORF;ENST00000491490.5_1_2:227771589-227860235:+|nuORF;ENST00000473218.5_1_2:227771569-227779114:+|nuORF	ENSG00000144468|ENST00000392062|RHBDD1	ENSG00000144468|ENST00000392062|RHBDD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7696533203125	2	575.769448	1149.52434	0.52677	0.0003033	0.25208	0.00014514	0.77885	0.00044844	575.7696580478652	47.16	0.84079	47.16	46.904	47.745	0					72	29	3	0	0	0	0.14076	1	10696	10696		32.305	19.774	1	824420			12815	4588	7162	7162	16433	16433					-0.04443714216586159
GYPGRQYYF	9	Unmodified	_GYPGRQYYF_					0	0	0		ENSG00000144468|ENST00000392062|RHBDD1;nc|ENSG00000144468|Q8TEB9-2|RHBDD1;ENST00000493526.1_1_2:227773206-227860235:+|nuORF;ENST00000491490.5_1_2:227771589-227860235:+|nuORF;ENST00000473218.5_1_2:227771569-227779114:+|nuORF	ENSG00000144468|ENST00000392062|RHBDD1	ENSG00000144468|ENST00000392062|RHBDD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.77001953125	2	575.769448	1149.52434	0.3892	0.00022409	0.69008	0.00039733	1.0793	0.00062142	575.7697261403773	46.953	0.97095	47.005	46.655	47.626	0.05257					69	35	3	0	0	0	0.068501	1	10626	10626		46.021	27.886	1	942720			12816	4588	7162	7162	16434	16434					-0.04443714216586159
GYPGRQYYF	9	Unmodified	_GYPGRQYYF_					0	0	0		ENSG00000144468|ENST00000392062|RHBDD1;nc|ENSG00000144468|Q8TEB9-2|RHBDD1;ENST00000493526.1_1_2:227773206-227860235:+|nuORF;ENST00000491490.5_1_2:227771589-227860235:+|nuORF;ENST00000473218.5_1_2:227771569-227779114:+|nuORF	ENSG00000144468|ENST00000392062|RHBDD1	ENSG00000144468|ENST00000392062|RHBDD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7697143554688	2	575.769448	1149.52434	0.76453	0.00044019	0.10442	6.0121E-05	0.86895	0.00050031	575.7695171493447	47.009	1.0449	47.063	46.657	47.702	0.054371					73	37	3	0	0	0	0.12846	1	10656	10656		34.102	15.967	1	761040			12817	4588	7162	7162	16435	16435					-0.04443714216586159
GYPLHLRQLK	10	Unmodified	_GYPLHLRQLK_					0	0	0		ENST00000396165.8_2_14:39735474-39735555:+|nuORF	ENST00000396165.8_2_14:39735474-39735555:+|nuORF	ENST00000396165.8_2_14:39735474-39735555:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5325622558594	3	408.911902	1223.71388	0.075117	3.0716E-05	-2.5704	-0.0010511	-2.4953	-0.0010204	408.9113236808792	29.204	0.44275	29.217	29	29.443	0.012266					19	15	2	0	0	0	0.3183	1	5192	5192		8.4443	1.4072	1	35944			12818	10106	7163	7163	16436	16436					0.11096777796592505
GYPLWKVTF	9	Unmodified	_GYPLWKVTF_					0	0	0		ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8019409179688	2	555.80276	1109.59097	0.33182	0.00018442	-1.3687	-0.0007607	-1.0368	-0.00057628	555.8019167451181	70.737	0.57107	70.798	70.546	71.117	0.060783					48	20	3	0	0	0	0.026033	1	17936	17936		82.529	57.855	1	1389900			12819	8131	7164	7164	16437	16437					0.04055521345298985
GYPLWKVTF	9	Unmodified	_GYPLWKVTF_					0	0	0		ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.802001953125	2	555.80276	1109.59097	0.33898	0.00018841	-1.4237	-0.0007913	-1.0847	-0.00060289	555.8016928869074	70.785	0.64173	70.76	70.407	71.049	-0.024864					53	22	3	0	0	0	0.026033	1	17949	17949		82.529	50.412	1	1175100			12820	8131	7164	7164	16438	16438					0.04055521345298985
GYPVPPYAFF	10	Unmodified	_GYPVPPYAFF_					0	0	0		nc|ENSG00000131759|P10276-3|RARA;ENSG00000131759|ENST00000254066|RARA	nc|ENSG00000131759|P10276-3|RARA	nc|ENSG00000131759|P10276-3|RARA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.2981567382812	2	579.286943	1156.55933	0.41227	0.00023882	-0.88553	-0.00051298	-0.47327	-0.00027416	579.286094880671	88.185	0.47291	88.185	87.951	88.424	0					37	23	2	0	0	0	0.30586	1	23351	23351		18.135	13.806	1	135020			12821	3588	7165	7165	16439	16439					-0.012684714086162785
GYPVPPYAFF	10	Unmodified	_GYPVPPYAFF_					0	0	0		nc|ENSG00000131759|P10276-3|RARA;ENSG00000131759|ENST00000254066|RARA	nc|ENSG00000131759|P10276-3|RARA	nc|ENSG00000131759|P10276-3|RARA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.2981567382812	2	579.286943	1156.55933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.39	1	88.387	87.887	88.887	-0.0028381								0	0	0	0.12514	1	23334	23334		49.669	30.412	1				12822	3588	7165	7165	16440	16440					-0.012684714086162785
GYPVPPYAFF	10	Unmodified	_GYPVPPYAFF_					0	0	0		nc|ENSG00000131759|P10276-3|RARA;ENSG00000131759|ENST00000254066|RARA	nc|ENSG00000131759|P10276-3|RARA	nc|ENSG00000131759|P10276-3|RARA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	579.286943	1156.55933	0.37931	0.00021973	-0.81772	-0.0004737	-0.43841	-0.00025397	579.2860135175761	88.01	0.41295	88.1	87.908	88.321	0.089203	-0.04247	3.3171E-05	NaN	32.117	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94882			12823	3588	7165	7165							-0.012684714086162785
GYQGKEAK	8	Unmodified	_GYQGKEAK_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.16119384765625	2	440.729792	879.445031	-0.085322	-3.7604E-05	-0.006963	-3.0688E-06	-0.092285	-4.0673E-05	440.72967872560696	18.726	0.7267	18.609	18.387	19.114	-0.11739					41	25	2	0	0	0	0.34353	1	1965	1965		4.756	1.1595	1	103070			12824	8424	7166	7166	16441	16441					0.000486388292756601
GYQGKEAK	8	Unmodified	_GYQGKEAK_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	440.729792	879.445031	-0.029855	-1.3158E-05	-1.3023	-0.00057397	-1.3322	-0.00058713	440.729630500396	18.586	0.67439	18.586	18.332	19.006	0	-0.011309	-0.00079801	NaN	4.756	51	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106260			12825	8424	7166	7166							0.000486388292756601
GYQNRLKVLY	10	Unmodified	_GYQNRLKVLY_					0	0	0		CDC20|p.E413Gfs*30|1|0.08|ENSG00000117399|chr1:43362228-43362229|-/GTAATGGGGAGAA|frameshift_variant;ENST00000488829.1_1_9:89626569-89628063:+|nuORF;ENSG00000117399|ENST00000310955|CDC20	CDC20|p.E413Gfs*30|1|0.08|ENSG00000117399|chr1:43362228-43362229|-/GTAATGGGGAGAA|frameshift_variant	CDC20|p.E413Gfs*30|1|0.08|ENSG00000117399|chr1:43362228-43362229|-/GTAATGGGGAGAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.87432861328125	3	418.571545	1252.69281	-0.074461	-3.1167E-05	3.329	0.0013934	3.2545	0.0013623	418.57296446358504	30.641	0.68989	30.668	30.394	31.084	0.027157					33	24	2	0	0	0	0.31942	1	5712	5712		6.1918	2.0752	1	199420			12826	101	7167	7167	16442	16442					0.07656767697085343
GYQQEIYKPK	10	Unmodified	_GYQQEIYKPK_					0	0	0			REV__nc|ENSG00000139155|Q9NYB5-4|SLCO1C1	REV__nc|ENSG00000139155|Q9NYB5-4|SLCO1C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.8750915527344	3	418.555672	1252.64519	-0.14803	-6.1957E-05	1.544	0.00064625	1.396	0.00058429	418.5565459992064	30.041	0.55368	30.068	29.667	30.22	0.027157					25	18	2	0	0	0	0.31942	1	5491	5491		3.5871	0	1	139110	+		12827	15967	7168	7168	16443	16443					0.02897068706238315
GYRGDFETF	9	Unmodified	_GYRGDFETF_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2437744140625	2	546.243264	1090.47197	0.7785	0.00042525	0.60938	0.00033287	1.3879	0.00075812	546.243532064761	46.975	0.48361	46.975	46.76	47.244	0					26	16	2	0	0	0	0.18208	1	10647	10647		26.268	5.8145	1	800060			12828	5511	7169	7169	16444	16444					-0.06964297350191373
GYRGDFETF	9	Unmodified	_GYRGDFETF_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.834716796875	2	546.243264	1090.47197	0.72542	0.00039626	0.57734	0.00031537	1.3028	0.00071162	546.2433142696507	46.751	0.508	46.803	46.554	47.062	0.052574					34	18	3	0	0	0	0.23235	1	10589	10589		21.537	8.4945	1	501940			12829	5511	7169	7169	16445	16445					-0.06964297350191373
GYRGDFETF	9	Unmodified	_GYRGDFETF_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8350219726562	2	546.243264	1090.47197	0.78952	0.00043127	0.44937	0.00024547	1.2389	0.00067674	546.243168341499	46.835	0.5658	46.889	46.602	47.168	0.054375					35	19	3	0	0	0	0.21538	1	10554	10554		26.268	26.268	1	540760			12830	5511	7169	7169	16446	16446					-0.06964297350191373
GYRGRQYVF	9	Unmodified	_GYRGRQYVF_					0	0	0		ENSG00000100053|ENST00000215855|CRYBB3	ENSG00000100053|ENST00000215855|CRYBB3	ENSG00000100053|ENST00000215855|CRYBB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.2975463867188	2	573.296165	1144.57778	0.45647	0.00026169	1.8633	0.0010682	2.3198	0.0013299	573.2973512638648	84.826	0.41996	84.813	84.557	84.977	-0.01284					27	16	2	0	0	0	0.17611	1	22197	22197		34.102	9.4286	1	181350			12831	1525	7170	7170	16447	16447					0.011270832859509028
GYRGRQYVF	9	Unmodified	_GYRGRQYVF_					0	0	0		ENSG00000100053|ENST00000215855|CRYBB3	ENSG00000100053|ENST00000215855|CRYBB3	ENSG00000100053|ENST00000215855|CRYBB3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	573.296165	1144.57778	0.59287	0.00033989	2.1728	0.0012457	2.7657	0.0015856	573.2976057709875	84.671	0.47403	84.752	84.501	84.975	0.080879	-0.015153	0.00026938	NaN	34.102	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123630			12832	1525	7170	7170							0.011270832859509028
GYRKVIISTNI	11	Unmodified	_GYRKVIISTNI_					0	0	0		DHX33|p.F698*|1|0.11|ENSG00000005100|chr17:5444235-5444236|AA/-|frameshift_variant;ENSG00000005100|ENST00000225296|DHX33;ENST00000575153.5_1_17:5347527-5364435:-|nuORF;nc|ENSG00000005100|Q9H6R0-2|DHX33	DHX33|p.F698*|1|0.11|ENSG00000005100|chr17:5444235-5444236|AA/-|frameshift_variant	DHX33|p.F698*|1|0.11|ENSG00000005100|chr17:5444235-5444236|AA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.9186706542969	3	421.918834	1262.73467	0.20722	8.7429E-05	-0.32828	-0.00013851	-0.12106	-5.1079E-05	421.91866354766165	44.63	0.83508	44.705	44.449	45.284	0.075047					52	30	2	0	0	0	0.35173	1	9886	9886		17.572	1.2974	1	1937500			12833	265	7171	7171	16448	16448					0.11381323385626274
GYRMRPLL	8	Unmodified	_GYRMRPLL_					0	0	0			REV__ENSG00000163378|ENST00000383701|EOGT	REV__ENSG00000163378|ENST00000383701|EOGT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7872009277344	2	503.286754	1004.55896	0.55983	0.00028175	0.80411	0.0004047	1.3639	0.00068645	503.28682863018605	84.6	0.77678	84.681	84.178	84.954	0.080887					40	30	2	0	0	0	0.34147	1	22185	22185		11.114	4.7604	1	140200	+		12834	17049	7172	7172	16449	16449					0.05685830390552837
GYSEHFVEF	9	Unmodified	_GYSEHFVEF_					0	0	0		ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	ENST00000559606.1_1_14:24704927-24706289:+|nuORF	ENST00000559606.1_1_14:24704927-24706289:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7462158203125	2	557.745639	1113.47673	0.64307	0.00035867	-0.27686	-0.00015441	0.36621	0.00020425	557.7458469353293	54.633	1.5192	54.633	54.268	55.787	0					179	55	6	0	0	0	3.327E-09	5	13025	12975;13025;13074;13119;13166		180.01	147.22	1	35582000			12835	1647	7173	7173	16450;16451;16452;16453;16454	16451					-0.07547413207407772
GYSEHFVEF	9	Unmodified	_GYSEHFVEF_					0	0	0		ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	ENST00000559606.1_1_14:24704927-24706289:+|nuORF	ENST00000559606.1_1_14:24704927-24706289:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.746337890625	2	557.745639	1113.47673	0.61442	0.00034269	-0.24232	-0.00013516	0.37209	0.00020753	557.7458792343992	54.536	1.6524	54.599	54.272	55.925	0.063202					186	61	5	0	0	0	2.0431E-11	5	12993	12945;12993;13037;13086;13132		196.65	161.72	1	37850000			12836	1647	7173	7173	16455;16456;16457;16458;16459	16456					-0.07547413207407772
GYSEHFVEF	9	Unmodified	_GYSEHFVEF_					0	0	0		ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000137198|ENST00000259727|GMPR;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	ENST00000559606.1_1_14:24704927-24706289:+|nuORF	ENST00000559606.1_1_14:24704927-24706289:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7457275390625	2	557.745639	1113.47673	0.60978	0.0003401	-0.22791	-0.00012711	0.38187	0.00021299	557.7457180011065	54.949	1.5314	54.933	54.55	56.081	-0.015923					167	56	5	0	0	0	2.0431E-11	4	13099	13048;13099;13148;13200		196.65	158.47	1	39812000			12837	1647	7173	7173	16460;16461;16462;16463	16461					-0.07547413207407772
GYSPYQLTW	9	Unmodified	_GYSPYQLTW_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7404174804688	2	557.763832	1113.51311	0.41271	0.00023019	-0.15599	-8.7005E-05	0.25672	0.00014319	557.7634915840358	72.831	0.5452	72.831	72.56	73.105	0					41	19	3	0	0	0	0.22143	1	18627	18627		19.362	3.5148	1	136820			12838	1644	7174	7174	16464	16464					-0.03910536310718271
GYSPYQLTW	9	Unmodified	_GYSPYQLTW_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7399291992188	2	557.763832	1113.51311	0.37996	0.00021193	0.32572	0.00018168	0.70568	0.0003936	557.7640110781383	72.794	0.55217	72.847	72.539	73.091	0.053833					37	19	3	0	0	0	0.24787	1	18609	18609		15.248	3.6082	1	114180			12839	1644	7174	7174	16465	16465					-0.03910536310718271
GYSPYQLTW	9	Unmodified	_GYSPYQLTW_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7393188476562	2	557.763832	1113.51311	0.40706	0.00022704	-0.033976	-1.8951E-05	0.37308	0.00020809	557.7638810767659	72.87	0.32698	72.841	72.627	72.954	-0.029305					17	11	2	0	0	0	0.22701	1	18594	18594		23.79	7.9426	1	132030			12840	1644	7174	7174	16466	16466					-0.03910536310718271
GYTESLNQPF	10	Unmodified	_GYTESLNQPF_					0	0	0		nc|ENSG00000174527|Q8N1T3|MYO1H;nc|ENSG00000174527|Q8N1T3-3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H;nc|ENSG00000174527|Q8N1T3-2|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.269775390625	2	578.269478	1154.5244	0.30909	0.00017874	1.8697	0.0010812	2.1788	0.0012599	578.2705910558211	60.907	1.0894	61.004	60.752	61.841	0.096989					65	39	2	0	0	0	0.19885	1	14931	14931		32.786	5.902	1	2155300			12841	12844	7175	7175	16467	16467					-0.046677590072249586
GYTESLNQPF	10	Unmodified	_GYTESLNQPF_					0	0	0		nc|ENSG00000174527|Q8N1T3|MYO1H;nc|ENSG00000174527|Q8N1T3-3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H;nc|ENSG00000174527|Q8N1T3-2|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.2705688476562	2	578.269478	1154.5244	0.29843	0.00017257	1.8927	0.0010945	2.1912	0.0012671	578.2705491925085	61.039	1.1461	61.029	60.784	61.93	-0.0094566					55	41	2	0	0	0	0.19885	1	14939	14939		32.786	5.902	1	2382000			12842	12844	7175	7175	16468	16468					-0.046677590072249586
GYTTAMAIEEY	11	Unmodified	_GYTTAMAIEEY_					0	0	0		ENSG00000198695|ENST00000361681|MT-ND6	ENSG00000198695|ENST00000361681|MT-ND6	ENSG00000198695|ENST00000361681|MT-ND6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.7759399414062	2	624.776279	1247.538	-0.25264	-0.00015785	2.0944	0.0013086	1.8418	0.0011507	625.2804795068588	81.28	0.29362	81.349	81.213	81.507	0.068985					22	15	2	0	0	0	0.42346	1	21132	21132		8.1555	2.4237	1	59396			12843	8102	7176	7176	16469	16469					-0.07586269290300152
GYVHAEWAL	9	Unmodified	_GYVHAEWAL_					0	0	0			REV__nc|ENSG00000224940|C9JH25-2|PRRT4	REV__nc|ENSG00000224940|C9JH25-2|PRRT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.26953125	2	523.258717	1044.50288	0.48263	0.00025254	-0.19357	-0.00010129	0.28906	0.00015126	523.2586298126422	43.634	1.7014	43.711	43.401	45.102	0.077515					136	62	4	0	0	0	0.22883	1	9983	9983		19.439	4.6007	1	5472200	+		12844	19112	7177	7177	16470	16470					-0.017590992453051513
GYVSQALLF	9	Unmodified	_GYVSQALLF_					0	0	0		nc|ENSG00000146828|Q9BXP2-2|SLC12A9;nc|ENSG00000146828|Q9BXP2-3|SLC12A9;nc|ENSG00000146828|Q9BXP2-4|SLC12A9;ENSG00000146828|ENST00000354161|SLC12A9	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7823486328125	2	499.271293	996.528032	0.13718	6.8489E-05	0.16402	8.1892E-05	0.3012	0.00015038	499.27120536794666	75.634	0.23427	75.634	75.534	75.769	0					14	7	2	0	0	0	0.16853	1	19450	19450		38.176	5.8701	1	141880			12845	4729	7178	7178	16471	16471					0.02962955557291025
GYVSQALLF	9	Unmodified	_GYVSQALLF_					0	0	0		nc|ENSG00000146828|Q9BXP2-2|SLC12A9;nc|ENSG00000146828|Q9BXP2-3|SLC12A9;nc|ENSG00000146828|Q9BXP2-4|SLC12A9;ENSG00000146828|ENST00000354161|SLC12A9	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7826843261719	2	499.271293	996.528032	0.35448	0.00017698	0.43353	0.00021645	0.78801	0.00039343	499.2715970654469	75.608	0.46129	75.66	75.454	75.915	0.052361					27	16	2	0	0	0	0.16853	1	19421	19421		38.176	5.8701	1	114040			12846	4729	7178	7178	16472	16472					0.02962955557291025
GYVSREQW	8	Unmodified	_GYVSREQW_					0	0	0			REV__ENSG00000101413|ENST00000373433|RPRD1B	REV__ENSG00000101413|ENST00000373433|RPRD1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2717895507812	2	512.745973	1023.47739	0.39498	0.00020252	4.1191	0.002112	4.514	0.0023146	512.7482501704145	43.478	0.33524	43.555	43.291	43.626	0.077515					21	11	2	0	0	0	0.33995	1	9552	9552		15.768	0	1	187420	+		12847	14269	7179	7179	16473	16473					-0.033405737677071556
GYVSREQW	8	Unmodified	_GYVSREQW_					0	0	0			REV__ENSG00000101413|ENST00000373433|RPRD1B	REV__ENSG00000101413|ENST00000373433|RPRD1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.27197265625	2	512.745973	1023.47739	0.28252	0.00014486	3.8957	0.0019975	4.1782	0.0021423	512.7480689520171	43.414	0.36243	43.498	43.241	43.604	0.083992					21	12	2	0	0	0	0.33995	1	9538	9538		10.183	0	1	212590	+		12848	14269	7179	7179	16474	16474					-0.033405737677071556
GYVVTISHTI	10	Unmodified	_GYVVTISHTI_					0	0	0		nc|ENSG00000158966|Q5VU97-2|CACHD1;ENSG00000158966|ENST00000651257|CACHD1	nc|ENSG00000158966|Q5VU97-2|CACHD1	nc|ENSG00000158966|Q5VU97-2|CACHD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2902221679688	2	545.300581	1088.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.01	1	53	52.5	53.5	-0.0096054								0	0	0	0.34994	1	12478	12478		14.838	0	1				12849	5382	7180	7180	16475	16475					0.045860121317673475
GYVYTLYTH	9	Unmodified	_GYVYTLYTH_					0	0	0		nc|ENSG00000168032|O75355-2|ENTPD3;ENSG00000168032|ENST00000301825|ENTPD3	nc|ENSG00000168032|O75355-2|ENTPD3	nc|ENSG00000168032|O75355-2|ENTPD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2976684570312	2	558.771657	1115.52876	0.32788	0.00018321	3.1975	0.0017867	3.5254	0.0019699	558.7741725088788	68.399	0.7226	68.38	68.172	68.895	-0.019157					40	25	2	0	0	0	0.24311	1	17247	17247		11.64	0	1	393850			12850	6238	7181	7181	16476	16476					-0.024382497936585423
GYWAWALGSF	10	Unmodified	_GYWAWALGSF_					0	0	0		ENST00000482694.1_1_2:85577073-85578124:-|nuORF	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.2578735351562	2	579.274367	1156.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.07	1	61.167	60.667	61.667	0.096985								0	0	0	0.34755	1	14971	14971		15.847	2.8047	1				12851	11048	7182	7182	16477	16477					-0.03782526211193726
HAAAYRNAL	9	Unmodified	_HAAAYRNAL_					0	0	0		ENSG00000140740|ENST00000268379|UQCRC2;ENST00000563711.5_1_16:21973998-21987565:+|nuORF	ENSG00000140740|ENST00000268379|UQCRC2	ENSG00000140740|ENST00000268379|UQCRC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7555847167969	2	493.761958	985.509363	0.60981	0.0003011	0.74765	0.00036916	1.3575	0.00067026	493.7623013735832	20.14	0.19678	20.084	19.978	20.175	-0.055693					8	6	2	0	0	0	0.17611	1	2430	2430		34.102	13.231	1	111560			12852	4332	7183	7183	16478	16478					0.016028387060714522
HAAKVILQV	9	Unmodified	_HAAKVILQV_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.80853271484375	2	489.808377	977.6022	0.2242	0.00010981	0.060792	2.9776E-05	0.28499	0.00013959	489.8082680190045	33.222	0.99162	33.222	32.924	33.916	0					82	35	3	0	0	0	0.10135	1	6423	6423		52.268	35.326	1	771120			12853	6752	7184	7184	16479	16479					0.11250343439485277
HAAKVILQV	9	Unmodified	_HAAKVILQV_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.80853271484375	2	489.808377	977.6022	0.29061	0.00014234	-0.12256	-6.003E-05	0.16805	8.2315E-05	489.8082040284937	33.113	0.91048	33.168	32.864	33.775	0.055309					69	32	3	0	0	0	0.012929	1	6395	6395		74.929	46.442	1	846510			12854	6752	7184	7184	16480	16480					0.11250343439485277
HAAKVILQV	9	Unmodified	_HAAKVILQV_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.8085632324219	2	489.808377	977.6022	0.21851	0.00010703	0.071422	3.4983E-05	0.28993	0.00014201	489.80829722686127	33.097	1.079	33.151	32.903	33.982	0.054375					76	38	3	0	0	0	0.017391	1	6404	6404		68.081	25.986	1	832170			12855	6752	7184	7184	16481	16481					0.11250343439485277
HAALPWTICL	10	Unmodified	_HAALPWTICL_					0	0	0		ENST00000417930.1_1_2:7870673-7870826:+|nuORF	ENST00000417930.1_1_2:7870673-7870826:+|nuORF	ENST00000417930.1_1_2:7870673-7870826:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3429565429688	2	562.799694	1123.58484	0.37717	0.00021227	-0.58457	-0.000329	-0.2074	-0.00011673	562.7994660292982	79.797	0.40824	79.859	79.643	80.051	0.061417					24	14	2	0	0	0	0.3156	1	20679	20679		10.824	10.824	1	379800			12856	10343	7185	7185	16482	16482					0.027986798421579806
HAALPWTICL	10	Unmodified	_HAALPWTICL_					0	0	0		ENST00000417930.1_1_2:7870673-7870826:+|nuORF	ENST00000417930.1_1_2:7870673-7870826:+|nuORF	ENST00000417930.1_1_2:7870673-7870826:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	562.799694	1123.58484	0.26513	0.00014921	-0.49336	-0.00027766	-0.22823	-0.00012845	562.7995718422249	79.89	0.36934	79.89	79.666	80.035	0	0.015474	3.579E-05	NaN	10.824	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369200			12857	10343	7185	7185							0.027986798421579806
HAARRRIRTRR	11	Unmodified	_HAARRRIRTRR_					0	0	0		ENST00000561547.5_1_16:28890342-28890897:-|nuORF	ENST00000561547.5_1_16:28890342-28890897:-|nuORF	ENST00000561547.5_1_16:28890342-28890897:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.96929931640625	3	483.634647	1447.88211	0.26618	0.00012873	-0.085861	-4.1526E-05	0.18031	8.7206E-05	483.6344784482424	90.842	0.48771	90.932	90.816	91.303	0.090675					60	34	3	0	0	0	0.48486	1	24092	24092		0.094841	0.011491	1	1073400			12858	11913	7186	7186	16483	16483					0.17608697553600905
HAEICNDIF	9	Unmodified	_HAEICNDIF_					0	0	0			REV__nc|ENSG00000173401|Q6UWM5-2|GLIPR1L1	REV__nc|ENSG00000173401|Q6UWM5-2|GLIPR1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2388916015625	2	531.239667	1060.46478	0.54636	0.00029025	-0.63333	-0.00033645	-0.086973	-4.6203E-05	531.2392588874214	71.442	0.75401	71.442	71.183	71.937	0					41	26	2	0	0	0	0.31038	1	18159	18159		7.2892	1.5288	1	656340	+		12859	17778	7187	7187	16484	16484					-0.06303353222278929
HAELKMLFT	9	Unmodified	_HAELKMLFT_					0	0	0		nc|ENSG00000244588|Q9H4I0-2|RAD21L1;ENSG00000244588|ENST00000683101|RAD21L1;nc|ENSG00000244588|Q9H4I0|RAD21L1	nc|ENSG00000244588|Q9H4I0-2|RAD21L1	nc|ENSG00000244588|Q9H4I0-2|RAD21L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3062133789062	2	545.291702	1088.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.545	1	45.605	45.105	46.105	0.059834								0	0	0	0.21009	1	10184	10184		19.257	1.1106	1				12860	8573	7188	7188	16485	16485					0.0281097360525564
HAFIQPEI	8	Unmodified	_HAFIQPEI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47;USP47|p.D513Gfs*5|1|0.03|ENSG00000170242|chr11:11929524-11929525|-/GAGAAGGAAA|frameshift_variant	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.75592041015625	2	477.75581	953.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.528	1	48.528	48.028	49.028	0								0	0	0	0.1231	1	11111	11111		57.471	25.166	1				12861	6433	7189	7189	16486	16486					0.01845802243030903
HAFIQPEI	8	Unmodified	_HAFIQPEI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47;USP47|p.D513Gfs*5|1|0.03|ENSG00000170242|chr11:11929524-11929525|-/GAGAAGGAAA|frameshift_variant	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7557373046875	2	477.75581	953.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.729	1	48.729	48.229	49.229	0								0	0	0	0.22807	1	11173	11173		39.957	11.47	1				12862	6433	7189	7189	16487	16487					0.01845802243030903
HAFIQPEI	8	Unmodified	_HAFIQPEI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47;USP47|p.D513Gfs*5|1|0.03|ENSG00000170242|chr11:11929524-11929525|-/GAGAAGGAAA|frameshift_variant	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.755859375	2	477.75581	953.497067	0.5562	0.00026573	-0.44635	-0.00021325	0.10984	5.2478E-05	477.7555730392683	48.515	1.139	48.563	48.258	49.397	0.047523					97	41	4	0	0	0	0.11736	2	11099	11099;11148		57.471	25.354	1	1783100			12863	6433	7189	7189	16488;16489	16488					0.01845802243030903
HAFIQPEI	8	Unmodified	_HAFIQPEI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47;USP47|p.D513Gfs*5|1|0.03|ENSG00000170242|chr11:11929524-11929525|-/GAGAAGGAAA|frameshift_variant	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7558898925781	2	477.75581	953.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.482	1	48.526	48.026	49.026	0.04332								0	0	0	0.1231	1	11087	11087		57.471	25.166	1				12864	6433	7189	7189	16490	16490					0.01845802243030903
HAFIQPEI	8	Unmodified	_HAFIQPEI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47;USP47|p.D513Gfs*5|1|0.03|ENSG00000170242|chr11:11929524-11929525|-/GAGAAGGAAA|frameshift_variant	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7558898925781	2	477.75581	953.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.66	1	48.692	48.192	49.192	0.032043								0	0	0	0.17391	1	11142	11142		48.346	16.04	1				12865	6433	7189	7189	16491	16491					0.01845802243030903
HAGASTMPLSF	11	Unmodified	_HAGASTMPLSF_					0	0	0		nc|ENSG00000101605|P52179-2|MYOM1;ENSG00000101605|ENST00000356443|MYOM1	nc|ENSG00000101605|P52179-2|MYOM1	nc|ENSG00000101605|P52179-2|MYOM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.76513671875	2	559.768591	1117.52263	0.38643	0.00021631	-2.8365	-0.0015878	-2.4501	-0.0013715	560.2694394070743	89.403	0.49611	89.403	89.202	89.698	0					48	28	2	0	0	0	0.36257	1	23727	23727		16.149	1.3108	1	170210			12866	1711	7190	7190	16492	16492					-0.03143091296851708
HAHAPLEL	8	Unmodified	_HAHAPLEL_					0	0	0			REV__ENST00000318596.7_1_19:19222348-19222501:+|nuORF	REV__ENST00000318596.7_1_19:19222348-19222501:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.76092529296875	2	444.240327	886.466101	0.37592	0.000167	1.589	0.0007059	1.9649	0.0008729	444.24100520109255	55.685	0.55226	55.685	55.302	55.854	0					27	19	2	0	0	0	0.34046	1	13237	13237		9.3474	0	1	289880	+		12867	19950	7191	7191	16493	16493					0.018326489288028824
HAHAPLEL	8	Unmodified	_HAHAPLEL_					0	0	0			REV__ENST00000318596.7_1_19:19222348-19222501:+|nuORF	REV__ENST00000318596.7_1_19:19222348-19222501:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.76092529296875	2	444.240327	886.466101	0.5809	0.00025806	0.83986	0.0003731	1.4208	0.00063116	444.2406196340229	55.887	0.53699	55.868	55.484	56.021	-0.019081					30	19	2	0	0	0	0.34185	1	13259	13259		10.183	10.183	1	367000	+		12868	19950	7191	7191	16494	16494					0.018326489288028824
HAHAQIPVV	9	Unmodified	_HAHAQIPVV_					0	0	0		ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6;ENST00000487548.2_1_6:76343389-76344528:+|nuORF	ENSG00000112701|ENST00000447266|SENP6	ENSG00000112701|ENST00000447266|SENP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7611083984375	2	486.274701	970.534849	0.27204	0.00013229	0.20558	9.997E-05	0.47762	0.00023225	486.274676574486	30.672	1.1187	30.672	30.113	31.231	0					96	39	4	0	0	0	0.25314	1	5645	5645		15.847	0.078963	1	485450			12869	2455	7192	7192	16495	16495					0.04840313228521609
HAHAQIPVV	9	Unmodified	_HAHAQIPVV_					0	0	0		ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6;ENST00000487548.2_1_6:76343389-76344528:+|nuORF	ENSG00000112701|ENST00000447266|SENP6	ENSG00000112701|ENST00000447266|SENP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.76123046875	2	486.274701	970.534849	0.072317	3.5166E-05	0.41343	0.00020104	0.48574	0.00023621	486.27478992701117	30.626	1.0024	30.653	30.109	31.111	0.027157					61	35	2	0	0	0	0.25314	1	5650	5650		15.847	0.078963	1	506450			12870	2455	7192	7192	16496	16496					0.04840313228521609
HAHTKELK	8	Unmodified	_HAHTKELK_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.74371337890625	2	482.272158	962.529764	0.45857	0.00022116	0.32245	0.00015551	0.78102	0.00037666	482.2721675564837	20.506	0.87741	20.396	20.046	20.923	-0.11003					61	31	2	0	0	0	0.34247	1	2667	2667		8.5933	1.8701	1	416770			12871	477	7193	7193	16497	16497					0.04700009365888036
HAKYKWYL	8	Unmodified	_HAKYKWYL_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD	nc|ENSG00000198947|P11532-4|DMD	nc|ENSG00000198947|P11532-4|DMD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.8002319335938	2	554.800552	1107.58655	0.34676	0.00019238	-0.80234	-0.00044514	-0.45558	-0.00025275	554.8002596595197	91.068	0.34341	91.158	91.121	91.465	0.090668					33	24	2	0	0	0	0.4419	1	24203	24203		8.5933	1.304	1	466700			12872	8170	7194	7194	16498	16498					0.037060569224195206
HALITGSCEL	10	Unmodified	_HALITGSCEL_					0	0	0			REV__ENSG00000114904|ENST00000233027|NEK4	REV__ENSG00000114904|ENST00000233027|NEK4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2799682617188	2	522.263142	1042.51173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.978	1	51.024	50.524	51.524	0.046574								0	0	0	0.33661	1	11861	11861		20.454	0	1		+		12873	14853	7195	7195	16499	16499					-0.007824936711358532
HALRILIV	8	Unmodified	_HALRILIV_					0	0	0		nc|ENSG00000094631|Q9UBN7-2|HDAC6;ENSG00000094631|ENST00000334136|HDAC6;ENST00000470942.1_1_X:48675013-48676517:+|nuORF	nc|ENSG00000094631|Q9UBN7-2|HDAC6	nc|ENSG00000094631|Q9UBN7-2|HDAC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7533264160156	2	467.813462	933.612371	0.16223	7.5895E-05	0.16472	7.706E-05	0.32696	0.00015295	467.813464232893	49.261	0.62917	49.261	48.97	49.6	0					27	22	2	0	0	0	0.32435	1	11301	11301		23.148	5.0134	1	160100			12874	1438	7196	7196	16500	16500					0.14290951164707622
HALRILIV	8	Unmodified	_HALRILIV_					0	0	0		nc|ENSG00000094631|Q9UBN7-2|HDAC6;ENSG00000094631|ENST00000334136|HDAC6;ENST00000470942.1_1_X:48675013-48676517:+|nuORF	nc|ENSG00000094631|Q9UBN7-2|HDAC6	nc|ENSG00000094631|Q9UBN7-2|HDAC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7532043457031	2	467.813462	933.612371	0.042039	1.9667E-05	0.21033	9.8396E-05	0.25237	0.00011806	467.8135536556842	49.173	0.4161	49.218	49.073	49.489	0.044891					20	14	2	0	0	0	0.30503	1	11309	11309		16.942	4.4107	1	172180			12875	1438	7196	7196	16501	16501					0.14290951164707622
HALYSMCGTF	10	Unmodified	_HALYSMCGTF_					0	0	0		ENST00000257290.9_1_4:55095451-55095565:+|nuORF	ENST00000257290.9_1_4:55095451-55095565:+|nuORF	ENST00000257290.9_1_4:55095451-55095565:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.2442626953125	2	565.243895	1128.47324	0.24275	0.00013721	-0.28815	-0.00016288	-0.045399	-2.5662E-05	565.2437012584439	43.473	0.51213	43.473	43.281	43.793	0					40	18	3	0	0	0	0.30958	1	9569	9569		19.257	3.4098	1	458880			12876	8937	7197	7197	16502	16502					-0.08586122577298738
HALYSMCGTF	10	Unmodified	_HALYSMCGTF_					0	0	0		ENST00000257290.9_1_4:55095451-55095565:+|nuORF	ENST00000257290.9_1_4:55095451-55095565:+|nuORF	ENST00000257290.9_1_4:55095451-55095565:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	565.243895	1128.47324	0.5521	0.00031207	-0.39951	-0.00022582	0.1526	8.6254E-05	565.2435482939475	43.142	0.51695	43.219	43.05	43.567	0.077515	-0.094838	-4.7152E-05	NaN	19.257	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	626840			12877	8937	7197	7197							-0.08586122577298738
HALYSMCGTF	10	Unmodified	_HALYSMCGTF_					0	0	0		ENST00000257290.9_1_4:55095451-55095565:+|nuORF	ENST00000257290.9_1_4:55095451-55095565:+|nuORF	ENST00000257290.9_1_4:55095451-55095565:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	565.243895	1128.47324	0.21101	0.00011927	-0.35708	-0.00020184	-0.14607	-8.2566E-05	565.2438002547192	43.166	0.56841	43.25	43.007	43.576	0.083992	-0.064191	8.0471E-07	NaN	19.257	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	603950			12878	8937	7197	7197							-0.08586122577298738
HAREEVYLQM	10	Unmodified	_HAREEVYLQM_					0	0	0			REV__ENSG00000116670|ENST00000376692|MAD2L2	REV__ENSG00000116670|ENST00000376692|MAD2L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.3114013671875	2	638.311155	1274.60776	0.77901	0.00049725	-0.070684	-4.5118E-05	0.70833	0.00045213	638.3109328444224	65.944	0.4924	66.033	65.839	66.332	0.088882					33	17	3	0	0	0	0.2811	1	16482	16482		22.736	0	1	329080	+		12879	14929	7198	7198	16503	16503					-0.018563458310381975
HAREEVYLQM	10	Unmodified	_HAREEVYLQM_					0	0	0			REV__ENSG00000116670|ENST00000376692|MAD2L2	REV__ENSG00000116670|ENST00000376692|MAD2L2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	638.311155	1274.60776	0.56464	0.00036042	0.35809	0.00022857	0.92272	0.00058899	638.3113524977077	66.123	0.41428	66.123	65.927	66.341	0	0.032868	0.0001914	NaN	22.736	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357260	+		12880	14929	7198	7198							-0.018563458310381975
HAREEVYLQM	10	Unmodified	_HAREEVYLQM_					0	0	0			REV__ENSG00000116670|ENST00000376692|MAD2L2	REV__ENSG00000116670|ENST00000376692|MAD2L2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	638.311155	1274.60776	0.63764	0.00040701	0.248	0.0001583	0.88565	0.00056532	638.3111121068492	66.129	0.54345	66.115	65.89	66.433	-0.013596	0.024694	5.087E-05	NaN	22.736	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374260	+		12881	14929	7198	7198							-0.018563458310381975
HASQPSLTV	9	Unmodified	_HASQPSLTV_					0	0	0		nc|ENSG00000175387|Q15796-2|SMAD2;ENSG00000175387|ENST00000262160|SMAD2	nc|ENSG00000175387|Q15796-2|SMAD2	nc|ENSG00000175387|Q15796-2|SMAD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.24835205078125	2	470.248349	938.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.808	1	31.808	31.308	32.308	0								0	0	0	0.1351	1	5988	5988		38.176	7.9508	1				12882	6861	7199	7199	16504	16504					0.010443103750503724
HASTLKGLH	9	Unmodified	_HASTLKGLH_					0	0	0		nc|ENSG00000119242|Q53HC0-2|CCDC92;ENSG00000119242|ENST00000238156|CCDC92;ENST00000542348.5_1_12:124403402-124428035:-|nuORF;ENST00000544798.2_1_12:124408671-124428876:-|nuORF	nc|ENSG00000119242|Q53HC0-2|CCDC92	nc|ENSG00000119242|Q53HC0-2|CCDC92	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7434997558594	2	482.272158	962.529764	0.58711	0.00028315	0.21113	0.00010182	0.79825	0.00038497	482.2721510107942	20.356	0.88068	20.303	20.037	20.917	-0.05291					54	31	2	0	0	0	0.25706	1	2639	2639		6.7232	0	1	443440			12883	2865	7200	7200	16505	16505					0.04700009365899405
HASTWKRTRG	10	Unmodified	_HASTWKRTRG_					0	0	0		nc|ENSG00000003249|Q9H9R9-3|DBNDD1	nc|ENSG00000003249|Q9H9R9-3|DBNDD1	nc|ENSG00000003249|Q9H9R9-3|DBNDD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.32373046875	2	600.323245	1198.63194	0.28669	0.00017211	0.53061	0.00031854	0.8173	0.00049065	600.3236100644904	105.64	0.94421	105.63	105.26	106.21	-0.0027847					360	136	3	0	0	0	0.40992	1	27926	27926		1.6526	0.17072	1	538230			12884	12553	7201	7201	16506	16506					0.04056675437482227
HATIIPKV	8	Unmodified	_HATIIPKV_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.57373046875	2	439.776545	877.538538	0.32167	0.00014146	-0.39238	-0.00017256	-0.070712	-3.1097E-05	439.7763509980218	32.253	0.79515	32.253	31.867	32.662	0					64	28	3	0	0	0	0.23527	1	6123	6123		56.177	33.029	1	600020			12885	1994	7202	7202	16507	16507					0.09486983002375382
HATIIPKV	8	Unmodified	_HATIIPKV_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.57373046875	2	439.776545	877.538538	0.38619	0.00016984	-0.36892	-0.00016224	0.017274	7.5965E-06	439.77632156647365	32.19	0.99611	32.232	31.909	32.906	0.042362					67	35	4	0	0	0	0.2026	1	6095	6095		62.573	46.726	1	609430			12886	1994	7202	7202	16508	16508					0.09486983002375382
HATIIPKV	8	Unmodified	_HATIIPKV_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	ENSG00000105568|ENST00000322088|PPP2R1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.57379150390625	2	439.776545	877.538538	0.15239	6.7017E-05	-0.14794	-6.5062E-05	0.0044457	1.9551E-06	439.7764172814845	32.197	1.057	32.246	31.841	32.898	0.049088					78	37	3	0	0	0	0.12959	1	6134	6134		65.235	47.1	1	713180			12887	1994	7202	7202	16509	16509					0.09486983002375382
HATNLDLIVD	10	Unmodified	_HATNLDLIVD_					0	0	0			REV__ENSG00000176979|ENST00000512596|TRIM60	REV__ENSG00000176979|ENST00000512596|TRIM60	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3452758789062	2	555.793121	1109.57169	-0.0053121	-2.9524E-06	-1.9445	-0.0010807	-1.9498	-0.0010837	555.7919325053061	12.997	0.11228	12.898	12.841	12.953	-0.099291					5	3	2	0	0	0	0.32123	1	311	311		1.6526	0.17072	1	13604	+		12888	17964	7203	7203	16510	16510					0.021285202637727707
HATNLDLIVD	10	Unmodified	_HATNLDLIVD_					0	0	0			REV__ENSG00000176979|ENST00000512596|TRIM60	REV__ENSG00000176979|ENST00000512596|TRIM60	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	555.793121	1109.57169	-0.027703	-1.5397E-05	-2.3475	-0.0013047	-2.3752	-0.0013201	555.7914648334539	12.945	0.12913	12.945	12.874	13.003	0	0.023481	-0.00015814	NaN	1.6526	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16693	+		12889	17964	7203	7203							0.021285202637727707
HAVGFFLPCTF	11	Unmodified	_HAVGFFLPCTF_					0	0	0			REV__ENST00000533277.5_1_11:66611269-66612734:+|nuORF	REV__ENST00000533277.5_1_11:66611269-66612734:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.87982177734375	3	413.539077	1237.5954	0.12522	5.1785E-05	-1.1682	-0.00048309	-1.043	-0.00043131	413.53867951184003	22.487	0.4375	22.4	22.191	22.628	-0.087608					26	15	2	0	0	0	0.41411	1	3213	3213		4.7159	1.1289	1	75683	+		12890	17796	7204	7204	16511	16511					-0.013893375034285782
HAVGFFLPCTF	11	Unmodified	_HAVGFFLPCTF_					0	0	0			REV__ENST00000533277.5_1_11:66611269-66612734:+|nuORF	REV__ENST00000533277.5_1_11:66611269-66612734:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.88006591796875	3	413.539077	1237.5954	0.025387	1.0499E-05	-1.0057	-0.00041592	-0.98036	-0.00040542	413.5386902068726	22.558	0.68285	22.513	22.294	22.977	-0.044867					38	23	2	0	0	0	0.44192	1	3289	3289		2.6312	0.34846	1	71181	+		12891	17796	7204	7204	16512	16512					-0.013893375034285782
HAVGIVVNK	9	Unmodified	_HAVGIVVNK_					0	0	0		ENSG00000122026|ENST00000311549|RPL21;ENST00000493466.1_1_4:37823021-37823243:+|nuORF;ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENST00000397467.2_1_3:1947466-1947595:+|nuORF;ENST00000469899.2_1_12:66431104-66431491:+|nuORF	ENSG00000122026|ENST00000311549|RPL21	ENSG00000122026|ENST00000311549|RPL21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.2467041015625	2	468.784902	935.55525	0.050351	2.3604E-05	-0.41438	-0.00019426	-0.36403	-0.00017065	468.7846795353949	21.64	0.36376	21.64	21.431	21.795	0					18	12	2	0	0	0	0.24311	1	2924	2924		11.64	6.8843	1	64031			12892	3028	7205	7205	16513	16513					0.08489483888320137
HAVGIVVNK	9	Unmodified	_HAVGIVVNK_					0	0	0		ENSG00000122026|ENST00000311549|RPL21;ENST00000493466.1_1_4:37823021-37823243:+|nuORF;ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENST00000397467.2_1_3:1947466-1947595:+|nuORF;ENST00000469899.2_1_12:66431104-66431491:+|nuORF	ENSG00000122026|ENST00000311549|RPL21	ENSG00000122026|ENST00000311549|RPL21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.246826171875	2	468.784902	935.55525	0.16875	7.9106E-05	-0.54956	-0.00025762	-0.38081	-0.00017852	468.78449170819357	21.694	0.33803	21.645	21.492	21.83	-0.049377					18	11	2	0	0	0	0.22596	1	2924	2924		21.747	13.153	1	57666			12893	3028	7205	7205	16514	16514					0.08489483888320137
HAVGVVRA	8	Unmodified	_HAVGVVRA_					0	0	0			REV__ENSG00000172927|ENST00000441339|MYEOV	REV__ENSG00000172927|ENST00000441339|MYEOV	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5706787109375	2	404.743037	807.471521	0.14089	5.7023E-05	0.63965	0.00025889	0.78053	0.00031592	404.74303267908	20.724	0.45712	20.614	20.407	20.864	-0.11003					21	15	2	0	0	0	0.34353	1	2610	2610		4.756	0	1	64602	+		12894	17747	7206	7206	16515	16515					0.060083725112690445
HAYDGKDYI	9	Unmodified	_HAYDGKDYI_					0	0	0		ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000206341|P01893|HLA-H	ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	nc|ENSG00000206341|P01893|HLA-H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8137817382812	2	541.251089	1080.48762	0.65109	0.0003524	-0.6935	-0.00037536	-0.042406	-2.2952E-05	541.2510452901869	29.127	0.54313	29.127	28.898	29.441	0					31	19	2	0	0	0	0.082647	1	5181	5181		61.602	15.581	1	334870			12895	12917;8249	7207	7207	16516	16516					-0.04940010833138331
HAYDGKDYI	9	Unmodified	_HAYDGKDYI_					0	0	0		ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000206341|P01893|HLA-H	ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	nc|ENSG00000206341|P01893|HLA-H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8139038085938	2	541.251089	1080.48762	0.50844	0.0002752	-0.42787	-0.00023159	0.080571	4.3609E-05	541.2511618052615	29.07	0.88828	29.082	28.831	29.72	0.012266					43	30	3	0	0	0	0.11018	1	5131	5131		53.404	15.43	1	364710			12896	12917;8249	7207	7207	16517	16517					-0.04940010833138331
HAYDGKDYI	9	Unmodified	_HAYDGKDYI_					0	0	0		ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000206341|P01893|HLA-H	ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	nc|ENSG00000206341|P01893|HLA-H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8138427734375	2	541.251089	1080.48762	0.41465	0.00022443	-0.19729	-0.00010678	0.21736	0.00011765	541.2513619754296	29.102	0.74581	29.116	28.818	29.564	0.013474					40	26	3	0	0	0	0.082647	1	5175	5175		61.602	15.581	1	274000			12897	12917;8249	7207	7207	16518	16518					-0.04940010833138331
HAYIIAKV	8	Unmodified	_HAYIIAKV_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC;PTPRC|p.Y550Sfs*30|1|0.4|ENSG00000081237|chr1:198718292-198718292|A/-|frameshift_variant	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7765808105469	2	457.776545	913.538538	0.19312	8.8406E-05	-0.20378	-9.3286E-05	-0.010659	-4.8795E-06	457.77630160672214	32.247	0.83242	32.301	32.045	32.877	0.054375					65	29	3	0	0	0	0.026049	1	6140	6140		93.883	55.732	1	597270			12898	1178	7208	7208	16519	16519					0.07830983002372705
HAYIIAKV	8	Unmodified	_HAYIIAKV_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC;PTPRC|p.Y550Sfs*30|1|0.4|ENSG00000081237|chr1:198718292-198718292|A/-|frameshift_variant	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	457.776545	913.538538	0.33201	0.00015199	-0.021908	-1.0029E-05	0.3101	0.00014196	457.77643607374085	32.248	0.94542	32.248	32.01	32.955	0	-0.016318	3.1683E-05	NaN	93.883	68	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	549580			12899	1178	7208	7208							0.07830983002372705
HAYIIAKV	8	Unmodified	_HAYIIAKV_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC;PTPRC|p.Y550Sfs*30|1|0.4|ENSG00000081237|chr1:198718292-198718292|A/-|frameshift_variant	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	457.776545	913.538538	0.45029	0.00020613	-0.051972	-2.3792E-05	0.39832	0.00018234	457.77645335933806	32.198	0.69369	32.244	31.972	32.666	0.045944	-0.020076	4.1577E-06	NaN	93.883	58	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	667030			12900	1178	7208	7208							0.07830983002372705
HCAKARDLREV	11	Unmodified	_HCAKARDLREV_					0	0	0			REV__ENSG00000135324|ENST00000257776|MRAP2	REV__ENSG00000135324|ENST00000257776|MRAP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.3637084960938	2	649.34332	1296.67209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.53	1	102.53	102.03	103.03	-0.0033646								0	0	0	0.36335	1	27306	27306		5.2969	0.39987	1		+		12901	15732	7209	7209	16520	16520					0.03561854045733526
HCHPLFKLL	9	Unmodified	_HCHPLFKLL_					0	0	0		ENST00000571240.1_1_17:7946036-7951880:+|nuORF;nc|ENSG00000179593|O15296-3|ALOX15B;ENSG00000179593|ENST00000380183|ALOX15B	ENST00000571240.1_1_17:7946036-7951880:+|nuORF	ENST00000571240.1_1_17:7946036-7951880:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3079833984375	2	554.310229	1106.60591	0.30096	0.00016683	-1.405	-0.00077881	-1.1041	-0.00061199	554.3090012170164	92.849	0.50148	92.939	92.656	93.158	0.089203					107	43	3	0	0	0	0.21303	1	24747	24747		21.747	1.293	1	139640			12902	7132	7210	7210	16521	16521					0.05686689941694567
HCIREKSRV	9	Unmodified	_HCIREKSRV_					0	0	0			REV__ENSG00000102580|ENST00000602402|DNAJC3	REV__ENSG00000102580|ENST00000602402|DNAJC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.8225708007812	2	564.308749	1126.60295	-0.16227	-9.1569E-05	1.1347	0.00064032	0.97242	0.00054875	564.3087952960102	12.828	0.49159	12.761	12.61	13.102	-0.067496					30	16	3	0	0	0	0.26204	1	314	314		1.4819	0.28856	1	66436	+		12903	14327	7211	7211	16522	16522					0.04470814816863822
HCITPLFLF	9	Unmodified	_HCITPLFLF_					0	0	0			REV__ENST00000467617.1_1_22:41363658-41368489:+|nuORF	REV__ENST00000467617.1_1_22:41363658-41368489:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3169555664062	2	545.791338	1089.56812	0.68331	0.00037294	4.4683	0.0024387	5.1516	0.0028117	545.7945182935681	84.796	0.85032	84.796	84.405	85.256	0					67	31	3	0	0	0	0.25291	1	22125	22125		5.2307	0	1	308190	+		12904	21304	7212	7212	16523	16523					0.026921789561811238
HCKEALLLQ	9	Unmodified	_HCKEALLLQ_					0	0	0			REV__ENSG00000118407|ENST00000237172|FILIP1	REV__ENSG00000118407|ENST00000237172|FILIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7930908203125	2	527.789327	1053.5641	0.76628	0.00040443	-0.018583	-9.8078E-06	0.7477	0.00039463	527.7896363063065	36.949	1.4268	37.042	36.633	38.06	0.093018					147	52	5	0	0	0	0.25989	1	7689	7689		14.838	0	1	5526000	+		12905	15009	7213	7213	16524	16524					0.03946089462488089
HCNVLALEKVN	11	Unmodified	_HCNVLALEKVN_					0	0	0			REV__ENSG00000160505|ENST00000301295|NLRP4	REV__ENSG00000160505|ENST00000301295|NLRP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3285522460938	2	620.329347	1238.64414	-0.13396	-8.3098E-05	1.1448	0.00071017	1.0109	0.00062707	620.3278784438116	100.14	0.5668	100.14	99.983	100.55	0					110	74	2	0	0	0	0.44523	2	26757	26757;26830		5.2969	1.7004	1	97270	+		12906	16905	7214	7214	16525;16526	16525					0.03436531065676718
HCNVLALEKVN	11	Unmodified	_HCNVLALEKVN_					0	0	0			REV__ENSG00000160505|ENST00000301295|NLRP4	REV__ENSG00000160505|ENST00000301295|NLRP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3292236328125	2	620.329347	1238.64414	-0.10978	-6.81E-05	1.1182	0.00069368	1.0085	0.00062558	620.3281207881291	100.15	0.77623	100.19	99.714	100.49	0.039001					134	101	2	0	0	0	0.44523	4	26717	26717;26749;26786;26818		5.2969	1.7004	1	118720	+		12907	16905	7214	7214	16527;16528;16529;16530	16527					0.03436531065676718
HCNVLALEKVN	11	Unmodified	_HCNVLALEKVN_					0	0	0			REV__ENSG00000160505|ENST00000301295|NLRP4	REV__ENSG00000160505|ENST00000301295|NLRP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3280029296875	2	620.329347	1238.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.942	1	99.935	99.435	100.43	-0.006897								0	0	0	0.36335	1	26756	26756		5.2969	0	1		+		12908	16905	7214	7214	16531	16531					0.03436531065676718
HCNVLALEKVN	11	Unmodified	_HCNVLALEKVN_					0	0	0			REV__ENSG00000160505|ENST00000301295|NLRP4	REV__ENSG00000160505|ENST00000301295|NLRP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.326904296875	2	620.329347	1238.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.09	1	100.09	99.587	100.59	-0.006897								0	0	0	0.36335	1	26790	26790		5.2969	1.7004	1		+		12909	16905	7214	7214	16532	16532					0.03436531065676718
HDIDISALL	9	Unmodified	_HDIDISALL_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3;REV__MYH2|p.D1767Mfs*4|1|0.19|ENSG00000125414|chr17:10523762-10523762|A/-|frameshift_variant	REV__MYH2|p.D1767Mfs*4|1|0.19|ENSG00000125414|chr17:10523762-10523762|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.3101501464844	2	498.771657	995.528761	0.48167	0.00024024	-0.54554	-0.0002721	-0.063872	-3.1858E-05	498.77082195427863	90.541	0.55293	90.542	90.306	90.859	0.0003891					60	41	2	0	0	0	0.25879	1	24068	24068		4.756	0	1	94280	+		12910	15265;14624	7215	7215	16533	16533					0.030817502063200664
HDIDISALL	9	Unmodified	_HDIDISALL_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3;REV__MYH2|p.D1767Mfs*4|1|0.19|ENSG00000125414|chr17:10523762-10523762|A/-|frameshift_variant	REV__MYH2|p.D1767Mfs*4|1|0.19|ENSG00000125414|chr17:10523762-10523762|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	498.771657	995.528761	0.41477	0.00020688	-0.63049	-0.00031447	-0.21572	-0.00010759	498.7710389357167	90.635	0.45649	90.635	90.319	90.776	0	0.061416	2.698E-05	NaN	4.756	54	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102300	+		12911	15265;14624	7215	7215							0.030817502063200664
HDLTPFISV	9	Unmodified	_HDLTPFISV_					0	0	0			REV__ENST00000520450.5_1_5:169483451-169483970:+|nuORF	REV__ENST00000520450.5_1_5:169483451-169483970:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2661743164062	2	514.7742	1027.53385	-0.045172	-2.3254E-05	0.011745	6.046E-06	-0.033427	-1.7208E-05	514.7741936273843	59.929	0.55259	59.929	59.675	60.228	0					25	19	2	0	0	0	0.079066	1	14635	14635		42.095	0	1	611180	+		12912	21885	7216	7216	16534	16534					0.021180540689329064
HDMLRKFII	9	Unmodified	_HDMLRKFII_					0	0	0		ENSG00000151148|ENST00000342494|UBE3B;nc|ENSG00000151148|Q7Z3V4-2|UBE3B	ENSG00000151148|ENST00000342494|UBE3B	ENSG00000151148|ENST00000342494|UBE3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8339233398438	2	586.834069	1171.65358	0.47106	0.00027643	-0.29868	-0.00017528	0.17238	0.00010116	586.8336725610507	82.287	2.4714	82.266	81.421	83.892	-0.020905					314	102	4	0	0	0	0.33018	1	21661	21661		4.3292	0.73274	1	2694900			12913	4940	7217	7217	16535	16535					0.07462344141868016
HDQDICVYIH	10	Unmodified	_HDQDICVYIH_					0	0	0		ENST00000259526.3_1_8:120436340-120436517:+|nuORF	ENST00000259526.3_1_8:120436340-120436517:+|nuORF	ENST00000259526.3_1_8:120436340-120436517:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.78271484375	2	621.78223	1241.54991	0.23276	0.00014473	0.46191	0.0002872	0.69467	0.00043193	621.7823606573472	68.094	0.56062	68.077	67.838	68.399	-0.016296					45	19	3	0	0	0	0.2593	2	17113	17113;17162		25.399	1.3787	1	406500			12914	8954	7218	7218	16536;16537	16536					-0.06120607756474783
HDRKHHPRQL	10	Unmodified	_HDRKHHPRQL_					0	0	0		ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.74884033203125	3	441.909554	1322.70683	-0.25229	-0.00011149	-2.0775	-0.00091805	-2.3297	-0.0010295	442.24273733980215	13.766	0.60438	13.661	13.357	13.961	-0.10466					42	21	3	0	0	0	0.32165	1	466	466		0.69767	0.07084	1	44189			12915	8189	7219	7219	16538	16538					0.05838857968751654
HDRKHHPRQL	10	Unmodified	_HDRKHHPRQL_					0	0	0		ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	441.909554	1322.70683	-0.17374	-7.6776E-05	-1.7478	-0.00077238	-1.9216	-0.00084916	441.90894979405107	13.789	0.54272	13.723	13.494	14.037	-0.066067	0.01937	0.00033087	NaN	0.69767	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51869			12916	8189	7219	7219							0.05838857968751654
HDSFWVKNEL	10	Unmodified	_HDSFWVKNEL_					0	0	0		ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.811279296875	2	637.811845	1273.60914	0.53281	0.00033983	-0.66409	-0.00042356	-0.13128	-8.3735E-05	637.8112735276122	85.826	2.0719	85.826	85.098	87.17	0					150	80	2	0	0	0	0.39227	1	22725	22725		4.897	1.3005	1	396350			12917	6773	7220	7220	16539	16539					-0.01672388470592523
HDSLNQEV	8	Unmodified	_HDSLNQEV_					0	0	0			REV__ENST00000494570.1_1_9:6984307-6986720:+|nuORF	REV__ENST00000494570.1_1_9:6984307-6986720:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2188720703125	2	471.219788	940.425024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.005	1	78.063	77.563	78.563	0.058151								0	0	0	0.36169	1	20152	20152		9.3474	0.75416	1		+		12918	14542	7221	7221	16540	16540					-0.04757156901325743
HDTLNRSDCI	10	Unmodified	_HDTLNRSDCI_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.3192749023438	2	587.269487	1172.52442	0.68698	0.00040344	0.78632	0.00046178	1.4733	0.00086522	587.2699687672721	50.759	0.87142	50.805	50.374	51.245	0.046577					55	31	2	0	0	0	0.24708	1	11822	11822		29.082	0	1	883200	+		12919	18154	7222	7222	16541	16541					-0.05494082278869428
HDTLNRSDCI	10	Unmodified	_HDTLNRSDCI_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.3191528320312	2	587.269487	1172.52442	0.69917	0.0004106	0.85102	0.00049978	1.5502	0.00091038	587.269950401253	51.032	0.86163	51.041	50.511	51.373	0.0095673					62	32	2	0	0	0	0.27337	1	11830	11830		29.082	6.3453	1	827340	+		12920	18154	7222	7222	16542	16542					-0.05494082278869428
HDTLRMLFQH	10	Unmodified	_HDTLRMLFQH_					0	0	0		nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27;nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27;ENSG00000159314|ENST00000685559|ARHGAP27	nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27	nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.88580322265625	3	433.220518	1296.63972	-0.36066	-0.00015625	2.8134	0.0012188	2.4528	0.0010626	433.2219415524398	14.214	0.48939	14.109	13.933	14.422	-0.10466					27	16	2	0	0	0	0.3183	1	657	657		8.4443	3.5473	1	253680			12921	5399	7223	7223	16543	16543					0.0032706664276247466
HDVTQLVE	8	Unmodified	_HDVTQLVE_					0	0	0			REV__nc|ENSG00000151746|Q96G01-2|BICD1	REV__nc|ENSG00000151746|Q96G01-2|BICD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2188720703125	2	470.740357	939.46616	0.52714	0.00024815	-1.7465	-0.00082217	-1.2194	-0.00057402	470.7392715783434	77.741	0.57598	77.796	77.51	78.086	0.055412					45	20	3	0	0	0	0.34092	1	20152	20152		13.508	0	1	250130	+		12922	16556	7224	7224	16544	16544					-0.005993958618546458
HDVTQLVE	8	Unmodified	_HDVTQLVE_					0	0	0			REV__nc|ENSG00000151746|Q96G01-2|BICD1	REV__nc|ENSG00000151746|Q96G01-2|BICD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	470.740357	939.46616	0.47101	0.00022172	-1.9601	-0.00092268	-1.4891	-0.00070096	470.739237425532	77.804	0.47758	77.804	77.555	78.033	0	0.013764	-3.0966E-05	NaN	13.508	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332990	+		12923	16556	7224	7224							-0.005993958618546458
HDVTQLVE	8	Unmodified	_HDVTQLVE_					0	0	0			REV__nc|ENSG00000151746|Q96G01-2|BICD1	REV__nc|ENSG00000151746|Q96G01-2|BICD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	470.740357	939.46616	0.72324	0.00034046	-2.049	-0.00096454	-1.3258	-0.00062409	470.7391356458993	77.802	0.52266	77.771	77.51	78.033	-0.031334	-0.019319	-0.00011468	NaN	13.508	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345800	+		12924	16556	7224	7224							-0.005993958618546458
HEDAEEPVLNR	11	Unmodified	_HEDAEEPVLNR_					0	0	0			REV__ENSG00000143942|ENST00000295304|CHAC2	REV__ENSG00000143942|ENST00000295304|CHAC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.261962890625	3	436.877474	1307.61059	-0.071721	-3.1333E-05	-0.35694	-0.00015594	-0.42866	-0.00018727	437.21048314189454	33.035	0.36879	33.091	32.973	33.341	0.055313					17	12	2	0	0	0	0.33122	1	6418	6418		7.0371	4.6023	1	63563	+		12925	16211	7225	7225	16545	16545					-0.030907991725143802
HEDELETL	8	Unmodified	_HEDELETL_					0	0	0			REV__ENST00000470903.5_1_1:224495952-224517816:-|nuORF	REV__ENST00000470903.5_1_1:224495952-224517816:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.28778076171875	2	493.227279	984.440005	0.28989	0.00014298	-0.47879	-0.00023615	-0.1889	-9.3172E-05	493.22700363585574	23.126	0.5968	23.081	22.847	23.444	-0.044867					32	21	2	0	0	0	0.34408	1	3296	3296		2.3027	1.5091	1	79712	+		12926	16196	7226	7226	16546	16546					-0.052837098239933766
HEGKSFQLRH	10	Unmodified	_HEGKSFQLRH_					0	0	0		ENSG00000107551|ENST00000340258|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF;ENST00000462822.1_1_10:45465650-45477981:+|nuORF;nc|ENSG00000107551|Q9H2L5-4|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8218383789062	2	619.823078	1237.6316	0.12495	7.745E-05	-2.0668	-0.001281	-1.9418	-0.0012036	619.8219891941172	22.324	0.42979	22.324	22.133	22.563	0					23	14	2	0	0	0	0.41168	1	3135	3135		1.3295	0.25807	1	58702			12927	2131	7227	7227	16547	16547					0.02229255717656997
HEKRHHGYRRK	11	Unmodified	_HEKRHHGYRRK_					0	0	0		ENSG00000126550|ENST00000246896|HTN1	ENSG00000126550|ENST00000246896|HTN1	ENSG00000126550|ENST00000246896|HTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.94384765625	3	501.943258	1502.80794	0.72734	0.00036509	0.53571	0.0002689	1.2631	0.00063398	501.9433952069102	54.924	0.64378	54.924	54.602	55.246	0					70	23	4	0	0	0	0.46842	1	13123	13123		2.2527	2.2527	1	2066600			12928	3277	7228	7228	16548	16548					0.07665309671415343
HELLMDQAI	9	Unmodified	_HELLMDQAI_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.64599609375	2	535.270967	1068.52738	0.49361	0.00026422	0.34655	0.0001855	0.84016	0.00044971	535.2709752685882	32.311	0.38217	32.366	32.247	32.63	0.054371					15	13	2	0	0	0	0.2451	1	6168	6168		15.847	1.2655	1	107990	+		12929	14858	7229	7229	16549	16549					-0.004142071540854886
HELLMDQAI	9	Unmodified	_HELLMDQAI_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	535.270967	1068.52738	0.78313	0.00041919	-0.29338	-0.00015704	0.48976	0.00026215	535.2712035254071	32.418	0.35691	32.418	32.199	32.556	0	0.0461	-0.00040868	NaN	15.847	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101080	+		12930	14858	7229	7229							-0.004142071540854886
HELLMDQAI	9	Unmodified	_HELLMDQAI_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	535.270967	1068.52738	0.67656	0.00036214	0.50806	0.00027195	1.1846	0.00063409	535.2710079116454	32.276	0.27208	32.331	32.206	32.478	0.055309	-0.040216	0.0004493	NaN	15.847	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95336	+		12931	14858	7229	7229							-0.004142071540854886
HENKDFHVVGP	11	Unmodified	_HENKDFHVVGP_					0	0	0			REV__ENSG00000167346|ENST00000380390|MMP26	REV__ENSG00000167346|ENST00000380390|MMP26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.24835205078125	3	426.879038	1277.61528	-0.4827	-0.00020606	-4.1868	-0.0017873	-4.6695	-0.0019933	426.8768005750306	12.321	0.20459	12.253	12.14	12.345	-0.06806					8	6	2	0	0	0	0.33326	1	95	95		1.4551	0.75745	1	20141	+		12932	17379	7230	7230	16550	16550					-0.012418702391187253
HEPALVEWLM	10	Unmodified	_HEPALVEWLM_					0	0	0			REV__ENST00000413366.7_1_17:64803214-64803382:+|nuORF	REV__ENST00000413366.7_1_17:64803214-64803382:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.20654296875	3	408.874236	1223.60088	-0.23621	-9.6582E-05	2.87	0.0011735	2.6338	0.0010769	408.87487344198763	25.891	0.4201	25.891	25.769	26.189	0					23	14	2	0	0	0	0.31847	1	4159	4159		0.62683	0	1	104290	+		12933	20790	7231	7231	16551	16551					-0.0019765871161325776
HESLFLLSK	9	Unmodified	_HESLFLLSK_					0	0	0			REV__ENST00000370035.7_1_1:109177820-109178099:+|nuORF	REV__ENST00000370035.7_1_1:109177820-109178099:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7950439453125	2	537.303124	1072.5917	0.47365	0.00025449	0.098056	5.2686E-05	0.5717	0.00030718	537.3031408271366	57.733	0.60939	57.733	57.578	58.187	0					27	21	2	0	0	0	0.25112	1	13997	13997		16.149	1.7437	1	447920	+		12934	20370	7232	7232	16552	16552					0.058303159943761784
HESPMPLCLMS	11	Unmodified	_HESPMPLCLMS_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.7772216796875	2	622.777244	1243.53994	0.37307	0.00023234	-0.68421	-0.00042611	-0.31114	-0.00019377	622.7771265856647	50.033	0.91911	50.033	49.819	50.738	0					99	33	4	0	0	0	0.35571	1	11583	11583		16.149	3.9084	1	2491800	+		12935	14878	7233	7233	16553	16553					-0.0720925507771426
HESPMPLCLMS	11	Unmodified	_HESPMPLCLMS_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.7774047851562	2	622.777244	1243.53994	0.039022	2.4302E-05	-0.46225	-0.00028788	-0.42322	-0.00026357	622.7773770507935	49.558	0.53317	49.603	49.317	49.85	0.044891					73	19	5	0	0	0	0.4112	1	11494	11494		8.1555	0	1	2796400	+		12936	14878	7233	7233	16554	16554					-0.0720925507771426
HESPMPLCLMS	11	Unmodified	_HESPMPLCLMS_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.7774047851562	2	622.777244	1243.53994	0.10999	6.8499E-05	-0.42171	-0.00026263	-0.31172	-0.00019413	622.7773335203648	49.561	0.56584	49.593	49.295	49.861	0.032043					80	20	5	0	0	0	0.38765	1	11428	11428		16.149	3.9084	1	2493700	+		12937	14878	7233	7233	16555	16555					-0.0720925507771426
HFAKGCEQYE	10	Unmodified	_HFAKGCEQYE_					0	0	0			REV__ENSG00000171295|ENST00000304060|ZNF440	REV__ENSG00000171295|ENST00000304060|ZNF440	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.55706787109375	3	404.509846	1210.50771	-0.33178	-0.00013421	2.5589	0.0010351	2.2271	0.00090089	404.5111735750702	22.951	0.43471	22.951	22.763	23.197	0					30	14	3	0	0	0	0.32009	1	3327	3327		1.9064	0.062138	1	55295	+		12938	17630	7234	7234	16556	16556					-0.0891258316485164
HFAYTMCVIF	10	Unmodified	_HFAYTMCVIF_					0	0	0			REV__ENSG00000100077|ENST00000324198|GRK3	REV__ENSG00000100077|ENST00000324198|GRK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.19329833984375	3	411.192801	1230.55657	0.15181	6.2424E-05	0.77649	0.00031929	0.9283	0.00038171	411.1931503847096	17.341	0.79432	17.281	16.971	17.766	-0.060429					86	27	4	0	0	0	0.39612	1	1613	1613		4.1895	0	1	467040	+		12939	14154	7235	7235	16557	16557					-0.04948386129467508
HFAYTMCVIF	10	Unmodified	_HFAYTMCVIF_					0	0	0			REV__ENSG00000100077|ENST00000324198|GRK3	REV__ENSG00000100077|ENST00000324198|GRK3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.192801	1230.55657	-0.032115	-1.3205E-05	1.1223	0.00046147	1.0902	0.00044826	411.1932402022588	17.462	0.78563	17.345	17.111	17.896	-0.11739	0.065262	0.00011945	NaN	4.1895	85	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	494050	+		12940	14154	7235	7235							-0.04948386129467508
HFEYIETF	8	Unmodified	_HFEYIETF_					0	0	0			REV__nc|ENSG00000158517|P14598-2|NCF1;REV__nc|ENSG00000290838|A6NI72|NCF1B	REV__nc|ENSG00000158517|P14598-2|NCF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7828979492188	2	543.250557	1084.48656	0.33555	0.00018229	-0.69915	-0.00037982	-0.3636	-0.00019753	543.2502740028028	26.267	0.63137	26.267	25.955	26.586	0					38	21	2	0	0	0	0.34131	1	4382	4382		12.532	3.7861	1	97266	+		12941	21103;23254	7236	7236	16558	16558					-0.05230225202058136
HFEYIETF	8	Unmodified	_HFEYIETF_					0	0	0			REV__nc|ENSG00000158517|P14598-2|NCF1;REV__nc|ENSG00000290838|A6NI72|NCF1B	REV__nc|ENSG00000158517|P14598-2|NCF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2501220703125	2	543.250557	1084.48656	0.41073	0.00022313	-0.60278	-0.00032746	-0.19205	-0.00010433	543.2502625067926	26.338	0.61607	26.3	25.931	26.547	-0.038671					35	21	2	0	0	0	0.43043	1	4291	4291		12.532	3.7861	1	88082	+		12942	21103;23254	7236	7236	16559	16559					-0.05230225202058136
HFEYIETF	8	Unmodified	_HFEYIETF_					0	0	0			REV__nc|ENSG00000158517|P14598-2|NCF1;REV__nc|ENSG00000290838|A6NI72|NCF1B	REV__nc|ENSG00000158517|P14598-2|NCF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.783203125	2	543.250557	1084.48656	0.41073	0.00022313	-0.60278	-0.00032746	-0.19205	-0.00010433	543.2502625067926	26.338	0.61607	26.3	25.931	26.547	-0.038671					35	21	2	0	0	0	0.34353	1	4387	4387		4.756	0.81161	1	88082	+		12943	21103;23254	7236	7236	16560	16560					-0.05230225202058136
HFGLWISNHF	10	Unmodified	_HFGLWISNHF_					0	0	0			REV__chr2:151357760-151366056|140|26.62|0.19|7.16|+|2|TNFAIP6,TNFAIP6|1	REV__chr2:151357760-151366056|140|26.62|0.19|7.16|+|2|TNFAIP6,TNFAIP6|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.5596008300781	3	419.876969	1256.60908	-0.12684	-5.3255E-05	-0.76347	-0.00032057	-0.89031	-0.00037382	419.87687576207	24.203	0.20623	24.203	24.134	24.34	0					9	6	2	0	0	0	0.32033	1	3664	3664		4.1895	0	1	26734	+		12944	13188	7237	7237	16561	16561					-0.00896343679983147
HFHKKRKQ	8	Unmodified	_HFHKKRKQ_					0	0	0			REV__ENSG00000179364|ENST00000447393|PACS2	REV__ENSG00000179364|ENST00000447393|PACS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.2462158203125	2	554.827966	1107.64138	0.43894	0.00024354	-2.347	-0.0013022	-1.9081	-0.0010586	554.8266754895141	36.646	0.29787	36.733	36.626	36.924	0.087406					18	10	2	0	0	0	0.344	1	7517	7517		2.5775	0.27475	1	96951	+		12945	18071	7238	7238	16562	16562					0.09186488513705626
HFIAEHYMF	9	Oxidation (M)	_HFIAEHYM(Oxidation (M))F_		HFIAEHYM(1)F		HFIAEHYM(180)F	0	0	1		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.7714233398438	2	605.771134	1209.52771	0.62169	0.0003766	-0.21363	-0.00012941	0.40806	0.00024719	605.7709104765938	45.226	2.0182	45.226	44.855	46.873	0					188	73	4	0	0	0	2.3311E-08	6	10093	10039;10093;10141;10190;10243;10295		179.23	149.01	1	2476400			12946	4544	7239	7239	16563;16564;16565;16566;16567;16568	16564		573			-0.06866787434228172
HFIAEHYMF	9	Oxidation (M)	_HFIAEHYM(Oxidation (M))F_		HFIAEHYM(1)F		HFIAEHYM(200)F	0	0	1		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.771240234375	2	605.771134	1209.52771	0.6107	0.00036994	-0.31261	-0.00018937	0.29809	0.00018057	605.7708313686018	44.854	1.6931	44.923	44.599	46.292	0.068569					171	60	4	0	0	0	1.474E-11	7	9981	9935;9981;10035;10086;10137;10191;10246		198.52	160.37	1	3010800			12947	4544	7239	7239	16569;16570;16571;16572;16573;16574;16575	16570		573			-0.06866787434228172
HFIAEHYMF	9	Oxidation (M)	_HFIAEHYM(Oxidation (M))F_		HFIAEHYM(1)F		HFIAEHYM(200)F	0	0	1		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.771240234375	2	605.771134	1209.52771	0.48187	0.0002919	-0.21509	-0.0001303	0.26678	0.0001616	605.7709296413086	44.914	2.0081	44.99	44.615	46.623	0.075047					195	73	4	0	0	0	1.474E-11	6	9946	9946;9991;10043;10090;10138;10190		198.52	160.37	1	3020100			12948	4544	7239	7239	16576;16577;16578;16579;16580;16581	16576		573			-0.06866787434228172
HFILLVNDFM	10	Unmodified	_HFILLVNDFM_					0	0	0		ENST00000478924.1_1_X:106184784-106184940:-|nuORF	ENST00000478924.1_1_X:106184784-106184940:-|nuORF	ENST00000478924.1_1_X:106184784-106184940:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.8424987792969	3	416.886365	1247.63727	-0.32965	-0.00013743	-0.067072	-2.7961E-05	-0.39672	-0.00016539	416.88619320607046	14.959	0.67572	14.959	14.505	15.181	0					42	23	2	0	0	0	0.32165	1	756	756		0.15932	0	1	195300			12949	10983	7240	7240	16582	16582					0.02335218185089616
HFINMYTRPK	10	Unmodified	_HFINMYTRPK_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47	ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.7452697753906	3	436.229014	1305.66521	-0.2144	-9.3529E-05	-1.8821	-0.00082101	-2.0965	-0.00091454	436.228395896675	18.709	0.53246	18.709	18.419	18.952	0					29	18	3	0	0	0	0.32143	1	1961	1961		1.5923	0.26264	1	56049			12950	5932;12812	7241	7241	16583	16583					0.024605411651918985
HFKNFCIRF	9	Unmodified	_HFKNFCIRF_					0	0	0		nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1	nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.55706787109375	3	404.542933	1210.60697	-0.32615	-0.00013194	-3.3847	-0.0013693	-3.7109	-0.0015012	404.54181995622093	23.034	0.14872	23.034	22.996	23.145	0					7	4	2	0	0	0	0.259	1	3327	3327		5.2969	1.4206	1	16455			12951	4180	7242	7242	16584	16584					0.010089043105608653
HFLSFIMLF	9	Unmodified	_HFLSFIMLF_					0	0	0			REV__ENST00000406697.5_1_12:7177995-7178043:+|nuORF	REV__ENST00000406697.5_1_12:7177995-7178043:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3054809570312	2	577.806988	1153.59942	0.40732	0.00023535	-2.9125	-0.0016828	-2.5052	-0.0014475	578.3060075614535	60.397	0.54668	60.492	60.292	60.839	0.095093					47	19	3	0	0	0	0.23783	1	14810	14810		18.135	5.6034	1	810100	+		12952	20741	7243	7243	16585	16585					0.028767519902885397
HFNWKIWPRWR	11	Unmodified	_HFNWKIWPRWR_					0	0	0		ENST00000540171.2_1_14:105147650-105150445:+|nuORF	ENST00000540171.2_1_14:105147650-105150445:+|nuORF	ENST00000540171.2_1_14:105147650-105150445:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2667846679688	3	542.624866	1624.85277	0.54995	0.00029842	1.0603	0.00057534	1.6102	0.00087376	542.6255039700048	62.635	0.3722	62.635	62.316	62.689	0					20	13	2	0	0	0	0.33346	1	15457	15457		0.50596	0.051438	1	92220			12953	11717	7244	7244	16586	16586					0.06533740484769623
HFNWKIWPRWR	11	Unmodified	_HFNWKIWPRWR_					0	0	0		ENST00000540171.2_1_14:105147650-105150445:+|nuORF	ENST00000540171.2_1_14:105147650-105150445:+|nuORF	ENST00000540171.2_1_14:105147650-105150445:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2669067382812	3	542.624866	1624.85277	0.61103	0.00033156	0.28894	0.00015679	0.89997	0.00048835	542.9588962733906	62.644	0.30338	62.741	62.603	62.906	0.096985					12	10	2	0	0	0	0.3333	1	15449	15449		1.3296	1.2463	1	122650			12954	11717	7244	7244	16587	16587					0.06533740484769623
HFPPRRPL	8	Unmodified	_HFPPRRPL_					0	0	0			REV__ENST00000420651.2_1_6:111804764-111824499:+|nuORF	REV__ENST00000420651.2_1_6:111804764-111824499:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.7644958496094	2	510.29851	1018.58247	0.23655	0.00012071	-2.5849	-0.0013191	-2.3484	-0.0011984	510.29799971363616	17.469	0.49795	17.409	17.152	17.65	-0.060429					42	16	4	0	0	0	0.344	1	1579	1579		2.5775	0.51773	1	35304	+		12955	20856	7245	7245	16588	16588					0.07392012219372646
HFQFRLPSYHL	11	Unmodified	_HFQFRLPSYHL_					0	0	0			REV__ENST00000491718.5_1_16:24816437-24816944:+|nuORF	REV__ENST00000491718.5_1_16:24816437-24816944:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.9352111816406	3	482.254328	1443.74115	0.086511	4.172E-05	-0.95501	-0.00046056	-0.86849	-0.00041884	482.58808265414746	24.55	0.54847	24.516	24.311	24.86	-0.03422					40	18	4	0	0	0	0.33303	1	3781	3781		2.4348	1.22	1	78138	+		12956	21616	7246	7246	16589	16589					0.037032613370001854
HFQFRLPSYHL	11	Unmodified	_HFQFRLPSYHL_					0	0	0			REV__ENST00000491718.5_1_16:24816437-24816944:+|nuORF	REV__ENST00000491718.5_1_16:24816437-24816944:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	482.254328	1443.74115	0.13697	6.6053E-05	-1.5008	-0.00072376	-1.3638	-0.00065771	482.25351892722034	24.421	0.50458	24.421	24.134	24.639	0	-0.059497	-0.00038416	NaN	2.4348	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65702	+		12957	21616	7246	7246							0.037032613370001854
HFRKLHLCLV	10	Unmodified	_HFRKLHLCLV_					0	0	0			REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3675537109375	2	633.36861	1264.72267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.42	1	115.42	114.92	115.92	0								0	0	0	0.38201	1	29913	29913		0.45834	0	1		+		12958	16034	7247	7247	16590	16590					0.10089428161450087
HFRRVALLPR	10	Unmodified	_HFRRVALLPR_					0	0	0		ENST00000564098.5_1_16:1796593-1797040:+|nuORF	ENST00000564098.5_1_16:1796593-1797040:+|nuORF	ENST00000564098.5_1_16:1796593-1797040:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.3623046875	2	632.891098	1263.76764	-0.010681	-6.76E-06	2.271	0.0014373	2.2603	0.0014305	632.8926785542711	98.248	0.15742	98.248	98.167	98.325	0					26	18	2	0	0	0	0.32167	1	26293	26293		1.4819	1.4819	1	157170			12959	11940	7248	7248	16591	16591					0.14630995018978865
HFRRVALLPR	10	Unmodified	_HFRRVALLPR_					0	0	0		ENST00000564098.5_1_16:1796593-1797040:+|nuORF	ENST00000564098.5_1_16:1796593-1797040:+|nuORF	ENST00000564098.5_1_16:1796593-1797040:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.3617553710938	2	632.891098	1263.76764	0.59733	0.00037804	1.5117	0.00095671	2.109	0.0013348	632.8919915898028	91.028	0.30862	91.028	90.927	91.236	0.00046539					31	22	2	0	0	0	0.32167	1	24170	24170		1.4819	1.4819	1	510400			12960	11940	7248	7248	16592	16592					0.14630995018978865
HFTLQKRRS	9	Unmodified	_HFTLQKRRS_					0	0	0			REV__nc|ENSG00000041988|Q8WTV1-4|THAP3	REV__nc|ENSG00000041988|Q8WTV1-4|THAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.835205078125	2	586.835988	1171.65742	0.59435	0.00034878	-2.1964	-0.0012889	-1.6021	-0.00094015	586.8344068810414	84.267	0.24208	84.267	84.163	84.405	0					14	9	2	0	0	0	0.25988	1	22087	22087		1.6526	0	1	156430	+		12961	13529	7249	7249	16593	16593					0.07846149959937065
HFVLIVFNMLF	11	Unmodified	_HFVLIVFNMLF_					0	0	0			REV__TEX36|p.V180Lfs*27|1|0.31|ENSG00000175018|chr10:125655923-125655923|C/-|frameshift_variant	REV__TEX36|p.V180Lfs*27|1|0.31|ENSG00000175018|chr10:125655923-125655923|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.24822998046875	3	460.58966	1378.74715	0.10339	4.762E-05	1.5711	0.00072364	1.6745	0.00077126	460.59032323628463	63.333	0.54258	63.333	63.093	63.635	0					36	19	3	0	0	0	0.3322	1	15681	15681		4.7159	1.1232	1	167850	+		12962	23321	7250	7250	16594	16594					0.07292643524283449
HFVQAFADIDK	11	Unmodified	_HFVQAFADIDK_					0	0	0			REV__YTHDC2|p.L804*|1|0.43|ENSG00000047188|chr5:113563461-113563468|TAATTGTA/-|frameshift_variant	REV__YTHDC2|p.L804*|1|0.43|ENSG00000047188|chr5:113563461-113563468|TAATTGTA/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.88812255859375	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.218	1	23.218	22.718	23.718	0								0	0	0	0.37382	1	3381	3381		1.2148	0	1		+		12963	13539	7251	7251	16595	16595					0.0072018456346540916
HFVQAFADIDK	11	Unmodified	_HFVQAFADIDK_					0	0	0			REV__YTHDC2|p.L804*|1|0.43|ENSG00000047188|chr5:113563461-113563468|TAATTGTA/-|frameshift_variant	REV__YTHDC2|p.L804*|1|0.43|ENSG00000047188|chr5:113563461-113563468|TAATTGTA/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8880310058594	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.613	1	27.613	27.113	28.113	0								0	0	0	0.36839	1	4709	4709		1.9275	0.27962	1		+		12964	13539	7251	7251	16596	16596					0.0072018456346540916
HFVQAFADIDK	11	Unmodified	_HFVQAFADIDK_					0	0	0			REV__YTHDC2|p.L804*|1|0.43|ENSG00000047188|chr5:113563461-113563468|TAATTGTA/-|frameshift_variant	REV__YTHDC2|p.L804*|1|0.43|ENSG00000047188|chr5:113563461-113563468|TAATTGTA/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8881530761719	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.25	1	23.163	22.663	23.663	-0.087608								0	0	0	0.36335	1	3394	3394		4.4062	2.6639	1		+		12965	13539	7251	7251	16597	16597					0.0072018456346540916
HFVQAFADIDK	11	Unmodified	_HFVQAFADIDK_					0	0	0			REV__YTHDC2|p.L804*|1|0.43|ENSG00000047188|chr5:113563461-113563468|TAATTGTA/-|frameshift_variant	REV__YTHDC2|p.L804*|1|0.43|ENSG00000047188|chr5:113563461-113563468|TAATTGTA/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8882141113281	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.221	1	22.171	21.671	22.671	-0.049377								0	0	0	0.36335	1	3078	3078		2.4348	0	1		+		12966	13539	7251	7251	16598	16598					0.0072018456346540916
HFWVTHIQ	8	Unmodified	_HFWVTHIQ_					0	0	0			REV__ENST00000394660.6_1_15:81604902-81605016:+|nuORF	REV__ENST00000394660.6_1_15:81604902-81605016:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2815551757812	2	534.274701	1066.53485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.678	1	99.678	99.178	100.18	0								0	0	0	0.36336	1	26659	26659		8.5933	1.304	1		+		12967	20624	7252	7252	16599	16599					0.0042431322851825826
HFYMALEPW	9	Unmodified	_HFYMALEPW_					0	0	0		ENSG00000178202|ENST00000323468|POGLUT3;nc|ENSG00000178202|Q7Z4H8-3|POGLUT3;nc|ENSG00000178202|Q7Z4H8-2|POGLUT3	ENSG00000178202|ENST00000323468|POGLUT3	ENSG00000178202|ENST00000323468|POGLUT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.2986450195312	2	597.276052	1192.53755	0.31837	0.00019016	-0.39185	-0.00023404	-0.073482	-4.3889E-05	597.2758318525076	24.322	0.59826	24.283	23.993	24.591	-0.038927					40	20	3	0	0	0	0.34681	1	3714	3714		1.8442	0.36234	1	117260			12968	7044	7253	7253	16600	16600					-0.0510159942887185
HFYMALEPW	9	Unmodified	_HFYMALEPW_					0	0	0		ENSG00000178202|ENST00000323468|POGLUT3;nc|ENSG00000178202|Q7Z4H8-3|POGLUT3;nc|ENSG00000178202|Q7Z4H8-2|POGLUT3	ENSG00000178202|ENST00000323468|POGLUT3	ENSG00000178202|ENST00000323468|POGLUT3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	597.276052	1192.53755	0.37398	0.00022337	-0.58104	-0.00034704	-0.20706	-0.00012367	597.2758212405935	24.152	0.59697	24.152	23.857	24.454	0	-0.087398	-6.2104E-05	NaN	1.8442	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132840			12969	7044	7253	7253							-0.0510159942887185
HFYRKIKA	8	Unmodified	_HFYRKIKA_					0	0	0		ENST00000302874.8_1_4:25347234-25351177:+|nuORF	ENST00000302874.8_1_4:25347234-25351177:+|nuORF	ENST00000302874.8_1_4:25347234-25351177:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2373657226562	2	531.813993	1061.61343	-1.0322	-0.00054896	1.7002	0.00090421	0.668	0.00035525	531.8147592672317	34.834	0.3613	34.834	34.672	35.033	0					20	12	2	0	0	0	0.34218	1	6943	6943		5.2307	0.47466	1	138100			12970	9242	7254	7254	16601	16601					0.08509165533587293
HGEIWRRRR	9	Unmodified	_HGEIWRRRR_					0	0	0		ENST00000586702.1_1_19:11313124-11313960:-|nuORF	ENST00000586702.1_1_19:11313124-11313960:-|nuORF	ENST00000586702.1_1_19:11313124-11313960:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2531433105469	3	422.574395	1264.70135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.247	1	12.179	11.679	12.679	-0.06806								0	0	0	0.2672	1	69	69		0.23584	0.095952	1				12971	12121	7255	7255	16602	16602					0.07959179176918951
HGENQYSKS	9	Unmodified	_HGENQYSKS_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2780151367188	2	525.23597	1048.45739	0.29264	0.0001537	-0.38141	-0.00020033	-0.088769	-4.6625E-05	525.235809070802	23.204	1.1394	23.204	22.594	23.734	0					72	39	3	0	0	0	0.25202	1	3207	3207		10.824	6.4947	1	151330			12972	6298	7256	7256	16603	16603					-0.06490369498328619
HGENQYSKS	9	Unmodified	_HGENQYSKS_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2781372070312	2	525.23597	1048.45739	0.2928	0.00015379	-0.78865	-0.00041423	-0.49586	-0.00026044	525.2357450219306	23.244	1.083	23.156	22.658	23.741	-0.08761					75	38	4	0	0	0	0.2451	1	3248	3248		15.847	11.518	1	181000			12973	6298	7256	7256	16604	16604					-0.06490369498328619
HGFLPLFKE	9	Unmodified	_HGFLPLFKE_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3328247070312	2	544.300384	1086.58622	0.1773	9.6505E-05	0.088438	4.8137E-05	0.26574	0.00014464	544.8021511036403	12.87	0.14194	12.803	12.763	12.905	-0.067496					7	4	2	0	0	0	0.26145	1	258	258		2.0598	1.535	1	15511	+		12974	15767	7257	7257	16605	16605					0.04638637202560858
HGFLQRDLF	9	Unmodified	_HGFLQRDLF_					0	0	0		FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant;ENSG00000164946|ENST00000380880|FREM1	FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant;ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.29736328125	2	566.79854	1131.58253	0.21182	0.00012006	0.73663	0.00041752	0.94845	0.00053758	566.798955533024	76.178	0.76228	76.231	76.189	76.951	0.053413					87	26	4	0	0	0	0.25526	1	19722	19722		7.9102	1.7044	1	8231700			12975	12345;5905	7258	7258	16606	16606					0.02199967428691707
HGFVMFLF	8	Unmodified	_HGFVMFLF_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2521057128906	2	499.251849	996.489145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.087	1	86.171	85.671	86.671	0.084251								0	0	0	0.34461	1	22634	22634		17.087	5.4463	1				12976	7526	7259	7259	16607	16607					-0.009240482780910497
HGGIFPAGRQR	11	Unmodified	_HGGIFPAGRQR_					0	0	0		ENST00000329654.8_1_1:66834537-66834606:+|nuORF	ENST00000329654.8_1_1:66834537-66834606:+|nuORF	ENST00000329654.8_1_1:66834537-66834606:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.325927734375	2	598.325788	1194.63702	0.40902	0.00024473	-0.26781	-0.00016024	0.14121	8.4489E-05	598.3254099821906	96.968	0.38741	96.962	96.788	97.175	-0.0055466					46	37	2	0	0	0	0.46475	1	25958	25958		2.7352	0.89096	1	109380			12977	9439	7260	7260	16608	16608					0.047489793001204816
HGGSIGHF	8	Unmodified	_HGGSIGHF_					0	0	0			REV__nc|ENSG00000143355|Q9NQ69-3|LHX9	REV__nc|ENSG00000143355|Q9NQ69-3|LHX9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.71868896484375	2	406.195919	810.377286	-0.16282	-6.6138E-05	3.7245	0.0015129	3.5617	0.0014468	406.19756125527783	62.108	0.28796	62.1	61.931	62.219	-0.0085526					14	10	2	0	0	0	0.34297	1	15268	15268		2.8892	0	1	97658	+		12978	16166	7261	7261	16609	16609					-0.03548766310859719
HGGSVPQLRV	10	Unmodified	_HGGSVPQLRV_					0	0	0		ENST00000419593.5_1_20:43991879-44037446:+|nuORF	ENST00000419593.5_1_20:43991879-44037446:+|nuORF	ENST00000419593.5_1_20:43991879-44037446:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.278076171875	2	525.296165	1048.57778	0.29938	0.00015726	-1.1442	-0.00060102	-0.84477	-0.00044376	525.2953421899842	22.688	0.5417	22.688	22.505	23.047	0					32	18	2	0	0	0	0.36786	1	3259	3259		9.3831	2.66	1	94845			12979	10353	7262	7262	16610	16610					0.05543083285942885
HGGVNKVK	8	Unmodified	_HGGVNKVK_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.2323913574219	2	419.748319	837.482085	-0.29629	-0.00012437	-0.20431	-8.576E-05	-0.5006	-0.00021013	419.74810872586505	13.344	1.2145	13.277	12.791	14.005	-0.067496					91	42	3	0	0	0	0.34297	1	523	523		6.3541	0	1	85657	+		12980	15141	7263	7263	16611	16611					0.056843551657038915
HGHFEETRDGA	11	Unmodified	_HGHFEETRDGA_					0	0	0			REV__ENST00000527039.1_1_11:209766-212514:+|nuORF	REV__ENST00000527039.1_1_11:209766-212514:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.2323913574219	3	419.186531	1254.53776	-0.24856	-0.00010419	-3.2441	-0.0013599	-3.4926	-0.0014641	419.18509328272967	13.841	0.28541	13.775	13.632	13.917	-0.066068					11	9	2	0	0	0	0.33326	1	523	523		1.4551	0.12547	1	31687	+		12981	18009	7264	7264	16612	16612					-0.0793250817525859
HGKKSGKP	8	Unmodified	_HGKKSGKP_					0	0	0		nc|ENSG00000117528|P28288-3|ABCD3;nc|ENSG00000117528|P28288-2|ABCD3;ENSG00000117528|ENST00000370214|ABCD3	nc|ENSG00000117528|P28288-3|ABCD3	nc|ENSG00000117528|P28288-3|ABCD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.2323913574219	2	419.748319	837.482085	-0.37559	-0.00015765	-0.043531	-1.8272E-05	-0.41912	-0.00017592	419.7481839393417	13.204	1.4322	13.204	12.847	14.279	0					102	50	3	0	0	0	0.34319	1	497	497		5.7604	0.52976	1	93394			12982	2799	7265	7265	16613	16613					0.056843551657038915
HGKKSGKP	8	Unmodified	_HGKKSGKP_					0	0	0		nc|ENSG00000117528|P28288-3|ABCD3;nc|ENSG00000117528|P28288-2|ABCD3;ENSG00000117528|ENST00000370214|ABCD3	nc|ENSG00000117528|P28288-3|ABCD3	nc|ENSG00000117528|P28288-3|ABCD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.2323303222656	2	419.748319	837.482085	-0.2638	-0.00011073	-0.2461	-0.0001033	-0.50989	-0.00021403	419.7481074703702	13.295	1.2113	13.196	12.785	13.997	-0.099291					92	42	3	0	0	0	0.34319	1	521	521		5.7604	0.52976	1	100460			12983	2799	7265	7265	16614	16614					0.056843551657038915
HGKVFYCC	8	Unmodified	_HGKVFYCC_					0	0	0		ENST00000568805.5_1_16:20809048-20811281:-|nuORF;nc|ENSG00000196678|A8K979-2|ERI2;ENSG00000196678|ENST00000357967|ERI2	ENST00000568805.5_1_16:20809048-20811281:-|nuORF	ENST00000568805.5_1_16:20809048-20811281:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2648620605469	2	478.709491	955.404429	-0.13992	-6.6982E-05	0.53146	0.00025441	0.39153	0.00018743	478.7096551613099	14.284	0.45323	14.284	14.138	14.591	0					39	15	5	0	0	0	0.34434	1	645	645		0.79363	0.10326	1	133810			12984	7894	7266	7266	16615	16615					-0.07505742086357259
HGLLLPHI	8	Unmodified	_HGLLLPHI_					0	0	0		nc|ENSG00000150712|Q9C0I1-3|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12;ENSG00000150712|ENST00000382142|MTMR12	nc|ENSG00000150712|Q9C0I1-3|MTMR12	nc|ENSG00000150712|Q9C0I1-3|MTMR12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7705078125	2	450.276712	898.538872	0.31239	0.00014066	-0.28969	-0.00013044	0.022697	1.022E-05	450.27644336980484	49.023	0.55304	49.023	48.798	49.351	0					25	19	2	0	0	0	0.052153	1	11255	11255		77.196	13.115	1	162390			12985	4922	7267	7267	16616	16616					0.08554402722222676
HGLLLPHI	8	Unmodified	_HGLLLPHI_					0	0	0		nc|ENSG00000150712|Q9C0I1-3|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12;ENSG00000150712|ENST00000382142|MTMR12	nc|ENSG00000150712|Q9C0I1-3|MTMR12	nc|ENSG00000150712|Q9C0I1-3|MTMR12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.77044677734375	2	450.276712	898.538872	0.04828	2.1739E-05	0.25712	0.00011577	0.3054	0.00013751	450.2767470549015	48.961	0.44733	48.993	48.878	49.326	0.032043					19	15	2	0	0	0	0.1467	1	11283	11283		52.334	19.881	1	165880			12986	4922	7267	7267	16617	16617					0.08554402722222676
HGLTVPLI	8	Unmodified	_HGLTVPLI_					0	0	0		ENSG00000113732|ENST00000519374|ATP6V0E1	ENSG00000113732|ENST00000519374|ATP6V0E1	ENSG00000113732|ENST00000519374|ATP6V0E1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.2633056640625	2	425.263271	848.511988	-0.093615	-3.9811E-05	-0.20825	-8.8563E-05	-0.30187	-0.00012837	425.26331416910784	59.003	1.7593	59.003	58.654	60.413	0					186	62	6	0	0	0	0.040061	1	14310	14310		82.939	12.075	1	9301000			12987	2527	7268	7268	16618	16618					0.08167294111046886
HGLTVPLI	8	Unmodified	_HGLTVPLI_					0	0	0		ENSG00000113732|ENST00000519374|ATP6V0E1	ENSG00000113732|ENST00000519374|ATP6V0E1	ENSG00000113732|ENST00000519374|ATP6V0E1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.2632751464844	2	425.263271	848.511988	-0.07413	-3.1525E-05	-0.18169	-7.7268E-05	-0.25582	-0.00010879	425.263318741529	58.837	1.5132	58.928	58.56	60.073	0.091301					175	53	6	0	0	0	0.083534	1	14273	14273		63.394	10.701	1	9340600			12988	2527	7268	7268	16619	16619					0.08167294111046886
HGLTVPLI	8	Unmodified	_HGLTVPLI_					0	0	0		ENSG00000113732|ENST00000519374|ATP6V0E1	ENSG00000113732|ENST00000519374|ATP6V0E1	ENSG00000113732|ENST00000519374|ATP6V0E1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.2633056640625	2	425.263271	848.511988	0.049806	2.1181E-05	-0.32032	-0.00013622	-0.27051	-0.00011504	425.26326659554667	58.939	1.6376	58.925	58.583	60.22	-0.014267					160	57	5	0	0	0	0.10409	1	14300	14300		59.795	7.1021	1	9273300			12989	2527	7268	7268	16620	16620					0.08167294111046886
HGLYPGRT	8	Unmodified	_HGLYPGRT_					0	0	0		ENST00000558161.5_1_15:91454616-91456971:+|nuORF	ENST00000558161.5_1_15:91454616-91456971:+|nuORF	ENST00000558161.5_1_15:91454616-91456971:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.5765075683594	2	450.737951	899.46135	0.17397	7.8416E-05	-0.040585	-1.8293E-05	0.13339	6.0123E-05	450.73787957218406	21.747	0.55766	21.747	21.487	22.045	0					41	20	3	0	0	0	0.34198	1	3019	3019		10.824	3.5347	1	148080			12990	11872	7269	7269	16621	16621					0.007597647860393408
HGLYPGRT	8	Unmodified	_HGLYPGRT_					0	0	0		ENST00000558161.5_1_15:91454616-91456971:+|nuORF	ENST00000558161.5_1_15:91454616-91456971:+|nuORF	ENST00000558161.5_1_15:91454616-91456971:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	450.737951	899.46135	0.22144	9.9811E-05	-0.29698	-0.00013386	-0.075543	-3.405E-05	450.7378128106258	21.806	0.62772	21.706	21.417	22.045	-0.10034	-0.015511	-0.00010286	NaN	10.824	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187020			12991	11872	7269	7269							0.007597647860393408
HGLYPGRT	8	Unmodified	_HGLYPGRT_					0	0	0		ENST00000558161.5_1_15:91454616-91456971:+|nuORF	ENST00000558161.5_1_15:91454616-91456971:+|nuORF	ENST00000558161.5_1_15:91454616-91456971:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	450.737951	899.46135	0.13892	6.2614E-05	-0.18905	-8.521E-05	-0.050131	-2.2596E-05	450.737827682701	21.76	0.59827	21.711	21.492	22.09	-0.049377	-0.010242	-5.5633E-06	NaN	10.824	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162190			12992	11872	7269	7269							0.007597647860393408
HGMIMLRI	8	2 Oxidation (M)	_HGM(Oxidation (M))IM(Oxidation (M))LRI_		HGM(1)IM(1)LRI		HGM(64)IM(64)LRI	0	0	2		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7645568847656	2	501.764797	1001.51504	0.46319	0.00023241	-0.60223	-0.00030218	-0.13904	-6.9766E-05	501.7647714869544	36.336	1.2724	36.336	36.012	37.285	0					75	45	3	0	0	0	0.082568	3	7356	7356;7404;7460		63.563	40.414	1	881920			12993	1447	7270	7270	16622;16623;16624	16622		177;178			0.014344779018870213
HGMIMLRI	8	2 Oxidation (M)	_HGM(Oxidation (M))IM(Oxidation (M))LRI_		HGM(1)IM(1)LRI		HGM(60)IM(60)LRI	0	0	2		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.76483154296875	2	501.764797	1001.51504	0.4929	0.00024732	-0.40468	-0.00020305	0.088222	4.4267E-05	501.76473325003855	36.206	1.2344	36.288	36.008	37.242	0.082355					68	44	2	0	0	0	0.10069	2	7378	7324;7378		60.39	35.716	1	1152400			12994	1447	7270	7270	16625;16626	16626		177;178			0.014344779018870213
HGMIMLRI	8	2 Oxidation (M)	_HGM(Oxidation (M))IM(Oxidation (M))LRI_		HGM(1)IM(1)LRI		HGM(51)IM(51)LRI	0	0	2		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7652893066406	2	501.764797	1001.51504	0.69713	0.00034979	-0.9365	-0.0004699	-0.23937	-0.00012011	501.76466199862205	36.187	1.1267	36.274	36.009	37.135	0.086246					75	40	3	0	0	0	0.15515	2	7358	7305;7358		50.855	32.709	1	1099900			12995	1447	7270	7270	16627;16628	16628		177;178			0.014344779018870213
HGPKALKV	8	Unmodified	_HGPKALKV_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2594901-2597328:-|nuORF;ENST00000572014.1_1_17:2595653-2597426:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.2688293457031	2	425.268887	848.523222	-0.34816	-0.00014806	0.38135	0.00016218	0.033193	1.4116E-05	425.2689655070374	15.019	0.50336	15.019	14.845	15.348	0					39	17	3	0	0	0	0.32038	1	910	910		28.487	12.64	1	360300			12996	3625	7271	7271	16629	16629					0.09290116205181675
HGPKALKV	8	Unmodified	_HGPKALKV_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2594901-2597328:-|nuORF;ENST00000572014.1_1_17:2595653-2597426:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.2686767578125	2	425.268887	848.523222	-0.31388	-0.00013348	0.339	0.00014417	0.025116	1.0681E-05	425.2689189420806	15.086	0.49414	14.976	14.818	15.312	-0.10981					40	17	3	0	0	0	0.27124	2	917	917;967		34.102	20.595	1	310190			12997	3625	7271	7271	16630;16631	16630					0.09290116205181675
HGPKALKV	8	Unmodified	_HGPKALKV_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2594901-2597328:-|nuORF;ENST00000572014.1_1_17:2595653-2597426:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.26885986328125	2	425.268887	848.523222	-0.32945	-0.0001401	0.34963	0.00014869	0.020182	8.5829E-06	425.2689169062978	15.128	0.49845	15.064	14.926	15.424	-0.064413					38	16	3	0	0	0	0.37937	1	925	925		21.747	13.153	1	379470			12998	3625	7271	7271	16632	16632					0.09290116205181675
HGPKAVTI	8	Unmodified	_HGPKAVTI_					0	0	0		ENSG00000151304|ENST00000339397|SRFBP1	ENSG00000151304|ENST00000339397|SRFBP1	ENSG00000151304|ENST00000339397|SRFBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.529052734375	2	411.745245	821.475937	0.039236	1.6155E-05	-0.060068	-2.4733E-05	-0.020832	-8.5775E-06	411.74510123870397	19.245	0.752	19.129	18.736	19.488	-0.11592					36	26	2	0	0	0	0.34272	1	2142	2142		7.9102	5.3327	1	59180			12999	4951	7272	7272	16633	16633					0.0580583693420067
HGQAGKRF	8	Unmodified	_HGQAGKRF_					0	0	0			REV__ENST00000609737.1_1_22:46436518-46436836:-|nuORF	REV__ENST00000609737.1_1_22:46436518-46436836:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7100830078125	2	450.743568	899.472583	0.093226	4.2021E-05	-0.54225	-0.00024442	-0.44903	-0.0002024	450.7427781511659	22.354	0.45399	22.254	21.994	22.448	-0.10034					29	16	2	0	0	0	0.34337	1	3070	3070		5.2307	0	1	31397	+		13000	22673	7273	7273	16634	16634					0.018825868801741308
HGQLKAKYEQ	10	Unmodified	_HGQLKAKYEQ_					0	0	0			REV__nc|ENSG00000146063|Q8WV44-4|TRIM41	REV__nc|ENSG00000146063|Q8WV44-4|TRIM41	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.7695922851562	2	601.319837	1200.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.69	1	101.69	101.19	102.19	0								0	0	0	0.37739	1	27106	27106		3.2813	1.4371	1		+		13001	16324	7274	7274	16635	16635					0.032833177662723756
HGRARFKSRQ	10	Unmodified	_HGRARFKSRQ_					0	0	0		ENST00000504840.1_1_4:85292851-85301105:-|nuORF	ENST00000504840.1_1_4:85292851-85301105:-|nuORF	ENST00000504840.1_1_4:85292851-85301105:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.2364501953125	3	414.9024	1241.68537	0.33937	0.0001408	0.70146	0.00029104	1.0408	0.00043184	414.9029769354514	38.632	1.777	38.729	37.871	39.648	0.097527					205	63	5	0	0	0	0.39325	1	8161	8161		4.7159	1.1289	1	2496000			13002	11303	7275	7275	16636	16636					0.07419472940046035
HGRIAALLAS	10	Unmodified	_HGRIAALLAS_					0	0	0			REV__nc|ENSG00000106078|O75128-6|COBL	REV__nc|ENSG00000106078|O75128-6|COBL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.3194885253906	2	504.801083	1007.58761	0.29611	0.00014948	1.7552	0.00088603	2.0513	0.0010355	504.8023365169226	81.212	0.51694	81.212	80.961	81.478	0					33	23	2	0	0	0	0.31358	1	21079	21079		13.906	2.2658	1	104430	+		13003	14508	7276	7276	16637	16637					0.0841227129131994
HGSIPHLGL	9	Unmodified	_HGSIPHLGL_					0	0	0			REV__ENSG00000143753|ENST00000323699|DEGS1;REV__ENSG00000168350|ENST00000305631|DEGS2	REV__ENSG00000143753|ENST00000323699|DEGS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2682800292969	2	465.761426	929.5083	-0.17383	-8.0962E-05	-0.30326	-0.00014125	-0.47708	-0.00022221	465.7611938240068	31.16	0.32831	31.16	31.033	31.361	0					18	11	2	0	0	0	0.24311	1	5778	5778		16.942	1.0951	1	79912	+		13004	16197;17452	7277	7277	16638	16638					0.04072624337175057
HGSIPHLGL	9	Unmodified	_HGSIPHLGL_					0	0	0			REV__ENSG00000143753|ENST00000323699|DEGS1;REV__ENSG00000168350|ENST00000305631|DEGS2	REV__ENSG00000143753|ENST00000323699|DEGS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2684631347656	2	465.761426	929.5083	-0.05892	-2.7443E-05	-0.61866	-0.00028815	-0.67758	-0.00031559	465.7607096635129	30.757	0.80537	30.785	30.552	31.358	0.027946					37	28	2	0	0	0	0.23783	1	5764	5764		18.135	1.1927	1	225890	+		13005	16197;17452	7277	7277	16639	16639					0.04072624337175057
HGSIPHLGL	9	Unmodified	_HGSIPHLGL_					0	0	0			REV__ENSG00000143753|ENST00000323699|DEGS1;REV__ENSG00000168350|ENST00000305631|DEGS2	REV__ENSG00000143753|ENST00000323699|DEGS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.26849365234375	2	465.761426	929.5083	0.13209	6.1521E-05	-0.35726	-0.0001664	-0.22518	-0.00010488	465.7610171088212	31.127	0.49099	31.168	30.988	31.479	0.040991					27	17	2	0	0	0	0.23783	1	5786	5786		18.135	1.1927	1	94276	+		13006	16197;17452	7277	7277	16640	16640					0.04072624337175057
HGSLGKLFF	9	Unmodified	_HGSLGKLFF_					0	0	0			REV__ENSG00000277556|ENST00000374779|OR13C5	REV__ENSG00000277556|ENST00000374779|OR13C5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.59375	2	503.279452	1004.54435	0.35659	0.00017947	-1.3623	-0.0006856	-1.0057	-0.00050613	503.78171926876945	58.86	0.16816	58.86	58.8	58.968	0					6	5	2	0	0	0	0.25291	1	14303	14303		9.3474	3.587	1	96919	+		13007	19335	7278	7278	16641	16641					0.0422608151403665
HGTKKKKEK	9	Unmodified	_HGTKKKKEK_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2753295898438	2	542.33529	1082.65603	0.14874	8.0665E-05	-0.98762	-0.00053562	-0.83889	-0.00045496	542.3352373113786	13.78	0.30631	13.676	13.538	13.845	-0.10466					14	10	2	0	0	0	0.26168	1	488	488		1.8442	0.36234	1	30236			13008	2412	7279	7279	16642	16642					0.1180051587118669
HGTKKKKEK	9	Unmodified	_HGTKKKKEK_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2752075195312	2	542.33529	1082.65603	0.2009	0.00010895	-1.0452	-0.00056685	-0.8443	-0.00045789	542.3349231891493	13.74	0.22701	13.674	13.575	13.802	-0.066068					12	7	2	0	0	0	0.26168	1	500	500		1.8442	0.36234	1	26049			13009	2412	7279	7279	16643	16643					0.1180051587118669
HGTQVRREY	9	Unmodified	_HGTQVRREY_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.2836303710938	2	573.294153	1144.57375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.582	1	61.679	61.179	62.179	0.096985								0	0	0	0.23367	1	15134	15134		11.64	0.81637	1				13010	12694	7280	7280	16644	16644					0.007249937922324534
HGTRLRVEF	9	Unmodified	_HGTRLRVEF_					0	0	0			REV__Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|105|3|sense	REV__Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|105|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7457885742188	2	557.809439	1113.60433	0.5497	0.00030663	3.5429	0.0019762	4.0926	0.0022829	557.8102562981198	54.726	0.34427	54.71	54.451	54.796	-0.015923					15	11	2	0	0	0	0.23783	1	13003	13003		12.532	0.89125	1	121460	+		13011	22730	7281	7281	16645	16645					0.052067721772800724
HGVFLPLV	8	Unmodified	_HGVFLPLV_					0	0	0		ENSG00000100647|ENST00000342745|SUSD6;ENST00000556993.1_1_14:70125309-70170323:+|nuORF	ENSG00000100647|ENST00000342745|SUSD6	ENSG00000100647|ENST00000342745|SUSD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2656555175781	2	441.265813	880.517074	0.31654	0.00013968	-0.12633	-5.5744E-05	0.19021	8.3933E-05	441.2656400536084	66.283	1.2085	66.283	65.927	67.135	0					93	42	3	0	0	0	0.41716	1	16655	16655		17.087	5.9721	1	870830			13012	1621	7282	7282	16646	16646					0.07203597973648357
HGVFLPLV	8	Unmodified	_HGVFLPLV_					0	0	0		ENSG00000100647|ENST00000342745|SUSD6;ENST00000556993.1_1_14:70125309-70170323:+|nuORF	ENSG00000100647|ENST00000342745|SUSD6	ENSG00000100647|ENST00000342745|SUSD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.26568603515625	2	441.265813	880.517074	0.24181	0.0001067	-0.073156	-3.2281E-05	0.16865	7.4422E-05	441.2656556580501	66.153	1.4159	66.237	65.916	67.332	0.083832					109	50	3	0	0	0	0.29242	1	16510	16510		24.21	7.1234	1	960980			13013	1621	7282	7282	16647	16647					0.07203597973648357
HGVFLPLV	8	Unmodified	_HGVFLPLV_					0	0	0		ENSG00000100647|ENST00000342745|SUSD6;ENST00000556993.1_1_14:70125309-70170323:+|nuORF	ENSG00000100647|ENST00000342745|SUSD6	ENSG00000100647|ENST00000342745|SUSD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.26580810546875	2	441.265813	880.517074	0.16703	7.3705E-05	0.058554	2.5838E-05	0.22558	9.9543E-05	441.2657243326235	66.24	1.4044	66.226	65.89	67.294	-0.013588					109	50	3	0	0	0	0.35781	1	16631	16631		24.21	13.095	1	1042800			13014	1621	7282	7282	16648	16648					0.07203597973648357
HGVILPRV	8	Unmodified	_HGVILPRV_					0	0	0		ENSG00000166912|ENST00000435680|MTMR10;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENSG00000166912|ENST00000435680|MTMR10;ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENSG00000166912|ENST00000435680|MTMR10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.63592529296875	2	445.782162	889.549771	0.4521	0.00020154	-0.76667	-0.00034177	-0.31458	-0.00014023	445.78166770811947	36.711	1.3584	36.711	36.229	37.587	0					110	48	3	0	0	0	0.23297	1	7423	7423		44.407	30.899	1	1411500			13015	6130;11980	7283	7283	16649	16649					0.10057805096516859
HGVILPRV	8	Unmodified	_HGVILPRV_					0	0	0		ENSG00000166912|ENST00000435680|MTMR10;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENSG00000166912|ENST00000435680|MTMR10;ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENSG00000166912|ENST00000435680|MTMR10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.635986328125	2	445.782162	889.549771	0.29253	0.0001304	-0.60946	-0.00027169	-0.31693	-0.00014128	445.78174817610267	36.593	1.3409	36.681	36.264	37.605	0.087406					110	48	3	0	0	0	0.17536	1	7433	7433		53.576	34.137	1	1255700			13016	6130;11980	7283	7283	16650	16650					0.10057805096516859
HGVILPRV	8	Unmodified	_HGVILPRV_					0	0	0		ENSG00000166912|ENST00000435680|MTMR10;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENSG00000166912|ENST00000435680|MTMR10;ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENSG00000166912|ENST00000435680|MTMR10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.63592529296875	2	445.782162	889.549771	0.67348	0.00030022	-1.0052	-0.00044809	-0.3317	-0.00014786	445.7815905025632	36.581	1.322	36.674	36.202	37.524	0.093014					102	47	3	0	0	0	0.23297	1	7498	7498		53.576	34.137	1	1344100			13017	6130;11980	7283	7283	16651	16651					0.10057805096516859
HGVVAGRL	8	Unmodified	_HGVVAGRL_					0	0	0		ENST00000552168.1_1_12:53456565-53457663:+|nuORF	ENST00000552168.1_1_12:53456565-53457663:+|nuORF	ENST00000552168.1_1_12:53456565-53457663:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.570556640625	2	404.743037	807.471521	-0.026847	-1.0866E-05	0.76785	0.00031078	0.74101	0.00029992	404.7431843265951	20.539	0.48858	20.539	20.31	20.798	0					22	16	2	0	0	0	0.34337	1	2554	2554		5.2307	2.3415	1	55651			13018	11809	7284	7284	16652	16652					0.06008372511280413
HGWYCEERS	9	Unmodified	_HGWYCEERS_					0	0	0			REV__ENSG00000142102|ENST00000409548|PGGHG	REV__ENSG00000142102|ENST00000409548|PGGHG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3772583007812	2	583.737822	1165.46109	0.47108	0.00027499	0.40964	0.00023912	0.88072	0.00051411	583.7380433821495	38.678	0.58111	38.775	38.491	39.072	0.097527					35	20	2	0	0	0	0.26168	1	7998	7998		0	0	1	290340	+		13019	16101	7285	7285	16653	16653					-0.11502022996137384
HGYENPTYK	9	Unmodified	_HGYENPTYK_					0	0	0		nc|ENSG00000084234|Q06481-6|APLP2;ENST00000533860.5_1_11:130009456-130013340:+|nuORF;nc|ENSG00000084234|Q06481-5|APLP2;nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481|APLP2	nc|ENSG00000084234|Q06481-6|APLP2	nc|ENSG00000084234|Q06481-6|APLP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.75634765625	2	554.756538	1107.49852	0.23432	0.00012999	0.078493	4.3544E-05	0.31282	0.00017354	554.7564574150547	17.928	0.79273	17.928	17.598	18.391	0					51	26	3	0	0	0	0.30064	1	1742	1742		8.7454	3.8484	1	92129			13020	12598	7286	7286	16654	16654					-0.050926084588581944
HGYENPTYK	9	Unmodified	_HGYENPTYK_					0	0	0		nc|ENSG00000084234|Q06481-6|APLP2;ENST00000533860.5_1_11:130009456-130013340:+|nuORF;nc|ENSG00000084234|Q06481-5|APLP2;nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481|APLP2	nc|ENSG00000084234|Q06481-6|APLP2	nc|ENSG00000084234|Q06481-6|APLP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.7566528320312	2	554.756538	1107.49852	0.13525	7.503E-05	-0.18255	-0.00010127	-0.047301	-2.6241E-05	554.7564277948035	18.133	0.60076	18.016	17.694	18.295	-0.11739					36	20	2	0	0	0	0.17555	1	1850	1850		27.223	19.934	1	88017			13021	12598	7286	7286	16655	16655					-0.050926084588581944
HGYENPTYK	9	Unmodified	_HGYENPTYK_					0	0	0		nc|ENSG00000084234|Q06481-6|APLP2;ENST00000533860.5_1_11:130009456-130013340:+|nuORF;nc|ENSG00000084234|Q06481-5|APLP2;nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481|APLP2	nc|ENSG00000084234|Q06481-6|APLP2	nc|ENSG00000084234|Q06481-6|APLP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.757080078125	2	554.756538	1107.49852	0.046668	2.5889E-05	-0.032045	-1.7777E-05	0.014623	8.1121E-06	554.7565772265624	18.1	0.7448	18.042	17.738	18.483	-0.058174					41	26	2	0	0	0	0.22935	1	1843	1843		19.362	14.465	1	94491			13022	12598	7286	7286	16656	16656					-0.050926084588581944
HGYSSCLL	8	Unmodified	_HGYSSCLL_					0	0	0		ENST00000368679.8_1_10:127704627-127704783:-|nuORF	ENST00000368679.8_1_10:127704627-127704783:-|nuORF	ENST00000368679.8_1_10:127704627-127704783:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.204833984375	2	440.205096	878.395638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.051	1	61.148	60.648	61.648	0.096985								0	0	0	0.36169	1	14965	14965		9.3474	0	1				13023	9764	7287	7287	16657	16657					-0.048423924511553196
HHAEVVKK	8	Unmodified	_HHAEVVKK_					0	0	0		ENST00000565125.5_1_11:68660869-68668061:-|nuORF;ENSG00000197345|ENST00000362034|MRPL21	ENST00000565125.5_1_11:68660869-68668061:-|nuORF	ENST00000565125.5_1_11:68660869-68668061:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.75018310546875	2	474.274701	946.534849	0.15426	7.3161E-05	0.74978	0.0003556	0.90403	0.00042876	474.2750854428929	24.32	0.70855	24.281	23.965	24.674	-0.038927					35	24	2	0	0	0	0.34337	1	3652	3652		5.2307	5.2307	1	94040			13024	7955	7288	7288	16658	16658					0.05944313228519604
HHARKFFLIP	10	Unmodified	_HHARKFFLIP_					0	0	0		ENST00000401617.6_1_2:29320804-29354210:+|nuORF;ENST00000438819.1_2_2:29353616-29354210:+|nuORF;ENST00000471165.1_1_2:29353708-29354210:+|nuORF;ENST00000401605.5_1_2:29344333-29354210:+|nuORF	ENST00000401617.6_1_2:29320804-29354210:+|nuORF	ENST00000401617.6_1_2:29320804-29354210:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3690795898438	2	633.366924	1264.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.25	1	119.25	118.75	119.75	0								0	0	0	0.38201	1	30777	30777		0.45834	0.057624	1				13025	10190	7289	7289	16659	16659					0.09752501379080059
HHCSVQQI	8	Unmodified	_HHCSVQQI_					0	0	0			REV__nc|ENSG00000182628|Q8WVK7-2|SKA2	REV__nc|ENSG00000182628|Q8WVK7-2|SKA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.6015319824219	2	476.226894	950.439234	0.273	0.00013001	-2.9307	-0.0013957	-2.6577	-0.0012657	476.22643220979853	51.422	0.70098	51.422	51.108	51.809	0					33	25	2	0	0	0	0.30795	1	11946	11946		30.637	1.555	1	219620	+		13026	23124	7290	7290	16660	16660					-0.03796782954032096
HHEEDFFLY	9	Unmodified	_HHEEDFFLY_					0	0	0		ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2268981933594	3	412.848856	1235.52474	-0.097786	-4.0371E-05	2.6207	0.0010819	2.5229	0.0010416	412.85019316656394	14.189	0.6125	14.085	13.903	14.516	-0.10466					50	20	4	0	0	0	0.25526	1	658	658		8.1555	3.2585	1	359020			13027	6441	7291	7291	16661	16661					-0.08360339287378338
HHEEDFFLY	9	Unmodified	_HHEEDFFLY_					0	0	0		ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	412.848856	1235.52474	-0.35568	-0.00014684	3.1278	0.0012913	2.7721	0.0011445	412.8502746886824	14.053	0.71402	14.053	13.847	14.561	0	-0.010269	0.00010484	NaN	8.1555	48	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514500			13028	6441	7291	7291							-0.08360339287378338
HHFLAPRE	8	Unmodified	_HHFLAPRE_					0	0	0			REV__ENSG00000083812|ENST00000196482|ZNF324	REV__ENSG00000083812|ENST00000196482|ZNF324	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2772216796875	2	503.764501	1005.51445	0.21861	0.00011013	1.7615	0.00088738	1.9801	0.00099751	503.7654212201795	24.444	0.71033	24.405	23.909	24.619	-0.038927					36	24	2	0	0	0	0.34408	1	3645	3645		2.3027	2.3027	1	106770	+		13029	13938	7292	7292	16662	16662					0.011911425687117116
HHFSFPSIF	9	Unmodified	_HHFSFPSIF_					0	0	0		ENSG00000164815|ENST00000297431|ORC5;nc|ENSG00000164815|O43913-2|ORC5;ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENSG00000164815|ENST00000297431|ORC5;ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.7747192382812	2	559.774534	1117.53451	0.26286	0.00014714	0.11208	6.2738E-05	0.37494	0.00020988	559.7743670658328	81.238	1.141	81.214	80.941	82.082	-0.02404					130	48	5	0	0	0	0.1669	1	21104	21104		28.487	3.0875	1	1479200			13030	11094;5878	7293	7293	16663	16663					-0.019551064913457594
HHHEIILT	8	Unmodified	_HHHEIILT_					0	0	0		nc|ENSG00000147274|P38159-3|RBMX	nc|ENSG00000147274|P38159-3|RBMX	nc|ENSG00000147274|P38159-3|RBMX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7931213378906	2	500.272158	998.529764	0.60358	0.00030196	-1.3587	-0.00067972	-0.75512	-0.00037777	500.27144057041244	64.386	0.48401	64.386	64.079	64.563	0					24	17	2	0	0	0	0.34092	1	15943	15943		13.508	0.97634	1	250430			13031	12747	7294	7294	16664	16664					0.030440093659080958
HHHLQRPPRSK	11	Unmodified	_HHHLQRPPRSK_					0	0	0			REV__ENST00000455674.2_3_2:231081511-231084650:-|nuORF	REV__ENST00000455674.2_3_2:231081511-231084650:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.9275207519531	3	464.928837	1391.76468	-0.42033	-0.00019542	-0.67747	-0.00031498	-1.0978	-0.0005104	464.9284688083236	108.27	0.61867	108.27	108.04	108.66	0					187	98	3	0	0	0	0.47633	1	28485	28485		1.2148	0.2893	1	1171100	+		13032	21163	7295	7295	16665	16665					0.08447119894162824
HHHLQRPPRSK	11	Unmodified	_HHHLQRPPRSK_					0	0	0			REV__ENST00000455674.2_3_2:231081511-231084650:-|nuORF	REV__ENST00000455674.2_3_2:231081511-231084650:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	464.928837	1391.76468	-0.42033	-0.00019542	-0.67747	-0.00031498	-1.0978	-0.0005104	464.9284688083236	108.27	0.61867	108.27	108.04	108.66	0	-0.0036847	0.0002562	NaN	1.2148	187	98	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1171100	+		13033	21163	7295	7295							0.08447119894162824
HHHLQRPPRSK	11	Unmodified	_HHHLQRPPRSK_					0	0	0			REV__ENST00000455674.2_3_2:231081511-231084650:-|nuORF	REV__ENST00000455674.2_3_2:231081511-231084650:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	464.928837	1391.76468	0.14112	6.5609E-05	-1.0999	-0.00051137	-0.95878	-0.00044577	464.9283544872045	108.27	0.45435	108.28	108.06	108.51	0.0067062	0.0036847	-0.00033299	NaN	1.2148	156	71	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1335400	+		13034	21163	7295	7295							0.08447119894162824
HHINLQYSTI	10	Unmodified	_HHINLQYSTI_					0	0	0		nc|ENSG00000182208|Q70IA6-2|MOB2;nc|ENSG00000182208|Q70IA6|MOB2;ENSG00000182208|ENST00000329957|MOB2	nc|ENSG00000182208|Q70IA6-2|MOB2	nc|ENSG00000182208|Q70IA6-2|MOB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.210693359375	3	409.21565	1224.62512	-0.11929	-4.8814E-05	-0.38923	-0.00015928	-0.50852	-0.00020809	409.2154855876941	18.083	0.69321	17.966	17.694	18.387	-0.11739					40	23	4	0	0	0	0.40854	1	1848	1848		1.9064	0.1641	1	101250			13035	7279	7296	7296	16666	16666					0.021793177662857488
HHKGQEAKQ	9	Unmodified	_HHKGQEAKQ_					0	0	0			REV__ENST00000583882.5_1_17:9820322-9862588:-|nuORF	REV__ENST00000583882.5_1_17:9820322-9862588:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8063354492188	2	531.775597	1061.53664	0.38252	0.00020341	-0.68637	-0.000365	-0.30386	-0.00016158	531.7753191019449	18.092	0.30768	18.092	17.991	18.299	0					16	10	2	0	0	0	0.25066	1	1872	1872		11.64	1.5664	1	41000	+		13036	22467	7297	7297	16667	16667					0.00833322246444368
HHKHFRSFG	9	Unmodified	_HHKHFRSFG_					0	0	0			REV__nc|ENSG00000158731|Q8NGY7|OR10J6P	REV__nc|ENSG00000158731|Q8NGY7|OR10J6P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2933349609375	2	576.794124	1151.57369	0.39423	0.00022739	2.0893	0.0012051	2.4836	0.0014325	577.2975250552494	86.839	0.21329	86.833	86.723	86.936	-0.0056229					9	8	2	0	0	0	0.25879	1	22832	22832		4.756	0.81161	1	89585	+		13037	23045	7298	7298	16668	16668					0.003970385828779399
HHKHFRSFG	9	Unmodified	_HHKHFRSFG_					0	0	0			REV__nc|ENSG00000158731|Q8NGY7|OR10J6P	REV__nc|ENSG00000158731|Q8NGY7|OR10J6P	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	576.794124	1151.57369	0.41568	0.00023976	2.8101	0.0016208	3.2257	0.0018606	576.7956857102012	86.566	0.12212	86.566	86.527	86.649	0	-0.073056	0.00088096	NaN	4.756	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73485	+		13038	23045	7298	7298							0.003970385828779399
HHKHFRSFG	9	Unmodified	_HHKHFRSFG_					0	0	0			REV__nc|ENSG00000158731|Q8NGY7|OR10J6P	REV__nc|ENSG00000158731|Q8NGY7|OR10J6P	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	576.794124	1151.57369	0.41122	0.00023719	1.7623	0.0010165	2.1735	0.0012537	576.7950011720396	86.434	0.10876	86.519	86.442	86.551	0.084251	-0.1207	-0.00032776	NaN	4.756	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66617	+		13039	23045	7298	7298							0.003970385828779399
HHKKHIKK	8	Unmodified	_HHKKHIKK_					0	0	0			REV__ENST00000423554.5_1_5:154200818-154202893:-|nuORF	REV__ENST00000423554.5_1_5:154200818-154202893:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.283447265625	2	528.332885	1054.65122	0.35571	0.00018793	-1.1902	-0.00062885	-0.83454	-0.00044091	528.3322258445567	16.19	0.45322	16.19	16.008	16.461	0					25	15	2	0	0	0	0.34337	1	1273	1273		5.2307	0.33366	1	72296	+		13040	17569	7299	7299	16669	16669					0.12607676519064626
HHKQHKHMK	9	Unmodified	_HHKQHKHMK_					0	0	0			REV__nc|ENSG00000205352|Q9NZ81-2|PRR13	REV__nc|ENSG00000205352|Q9NZ81-2|PRR13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.56927490234375	3	404.217331	1209.63016	-0.16163	-6.5336E-05	-0.88052	-0.00035592	-1.0422	-0.00042126	404.21685715407114	17.754	0.39123	17.754	17.568	17.96	0					20	12	2	0	0	0	0.25992	1	1729	1729		4.5289	0.65253	1	58092	+		13041	18990	7300	7300	16670	16670					0.033733431479049614
HHLLHWVF	8	Unmodified	_HHLLHWVF_					0	0	0			REV__ENSG00000138135|ENST00000371852|CH25H	REV__ENSG00000138135|ENST00000371852|CH25H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7926635742188	2	544.793061	1087.57157	0.066627	3.6298E-05	-0.46201	-0.0002517	-0.39539	-0.0002154	544.7921946712831	113.85	0.39533	113.85	113.65	114.04	0					69	45	2	0	0	0	0.44842	1	29589	29589		6.3541	1.1234	1	35402	+		13042	15905	7301	7301	16671	16671					0.031286098450891586
HHLLHWVF	8	Unmodified	_HHLLHWVF_					0	0	0			REV__ENSG00000138135|ENST00000371852|CH25H	REV__ENSG00000138135|ENST00000371852|CH25H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.296875	2	544.793061	1087.57157	0.38164	0.00020791	-0.23918	-0.0001303	0.14246	7.7611E-05	544.7920184654934	116.81	0.41988	116.79	116.69	117.11	-0.022781					69	48	2	0	0	0	0.46461	1	30255	30255		0.79363	0.10326	1	23545	+		13043	15905	7301	7301	16672	16672					0.031286098450891586
HHLLHWVF	8	Unmodified	_HHLLHWVF_					0	0	0			REV__ENSG00000138135|ENST00000371852|CH25H	REV__ENSG00000138135|ENST00000371852|CH25H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3177490234375	2	544.793061	1087.57157	0.3821	0.00020817	-0.28583	-0.00015572	0.096269	5.2446E-05	544.7921593188628	117.96	0.25282	117.94	117.8	118.05	-0.024147					47	31	2	0	0	0	0.34434	1	30514	30514		0.79363	0	1	24033	+		13044	15905	7301	7301	16673	16673					0.031286098450891586
HHLPHETSRLE	11	Unmodified	_HHLPHETSRLE_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.5650329589844	3	452.565342	1354.6742	-0.15921	-7.2055E-05	-0.26096	-0.0001181	-0.42017	-0.00019015	452.5652319135042	13.527	0.74151	13.527	13.282	14.024	0					77	25	5	0	0	0	0.36722	2	441	441;488		15.538	6.2947	1	833550			13045	5064	7302	7302	16674;16675	16674					0.011046060552416748
HHLPHETSRLE	11	Unmodified	_HHLPHETSRLE_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.56524658203125	3	452.565342	1354.6742	-0.19334	-8.75E-05	-0.1694	-7.6663E-05	-0.36274	-0.00016416	452.5652824368137	13.642	0.6611	13.543	13.306	13.967	-0.09929					80	23	5	0	0	0	0.36722	2	516	464;516		15.538	5.7742	1	785250			13046	5064	7302	7302	16676;16677	16677					0.011046060552416748
HHLPHETSRLE	11	Unmodified	_HHLPHETSRLE_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.5650329589844	3	452.565342	1354.6742	-0.19278	-8.7245E-05	-0.18778	-8.4982E-05	-0.38056	-0.00017223	452.5652808907272	13.676	0.70625	13.61	13.33	14.036	-0.06635					77	24	4	0	0	0	0.36722	2	461	461;510		15.538	6.2947	1	808770			13047	5064	7302	7302	16678;16679	16678					0.011046060552416748
HHLPHETSRLE	11	Unmodified	_HHLPHETSRLE_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	452.565342	1354.6742	-0.15921	-7.2055E-05	-0.26096	-0.0001181	-0.42017	-0.00019015	452.5652319135042	13.527	0.74151	13.527	13.282	14.024	0	-0.033025	-7.9232E-05	NaN	15.538	77	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	833550			13048	5064	7302	7302							0.011046060552416748
HHLSDLALTLP	11	Unmodified	_HHLSDLALTLP_					0	0	0		ENST00000396522.6_1_14:21967741-21972178:-|nuORF;ENST00000544500.5_1_14:21971797-21971971:-|nuORF;ENST00000536201.5_1_14:21969853-21979446:-|nuORF;ENSG00000165819|ENST00000298717|METTL3	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8375854492188	2	608.837862	1215.66117	-0.013757	-8.376E-06	-0.033989	-2.0694E-05	-0.047747	-2.907E-05	608.8376537357569	105.7	0.97192	105.7	105.33	106.3	0					340	139	3	0	0	0	0.47546	1	27936	27936		1.3295	0.13619	1	931180			13049	10118	7303	7303	16680	16680					0.06196774943123273
HHPLRIKKQL	10	Unmodified	_HHPLRIKKQL_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B;ENST00000466480.1_1_1:114448336-114454776:+|nuORF	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.5233459472656	3	423.934929	1268.78296	-0.45734	-0.00019388	-2.7817	-0.0011793	-3.2391	-0.0013731	423.93354860393674	12.458	0.088896	12.39	12.345	12.434	-0.06806					4	2	2	0	0	0	0.32174	1	126	126		0.15932	0.01943	1	12403			13050	2837	7304	7304	16681	16681					0.15931861816170567
HHPMTKKQVV	10	Unmodified	_HHPMTKKQVV_					0	0	0		ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENST00000510957.1_1_22:31049909-31050715:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.8347778320312	2	602.8346	1203.65465	0.16484	9.9372E-05	-0.22401	-0.00013504	-0.059171	-3.5671E-05	602.8343998063358	97.428	0.56279	97.428	97.21	97.773	0					133	56	3	0	0	0	0.37751	2	26063	26027;26063		7.609	3.0801	1	189160			13051	11378	7305	7305	16682;16683	16683					0.06096558510739669
HHPMTKKQVV	10	Unmodified	_HHPMTKKQVV_					0	0	0		ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENST00000510957.1_1_22:31049909-31050715:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8345336914062	2	602.8346	1203.65465	0.3463	0.00020876	-0.31929	-0.00019248	0.027008	1.6282E-05	602.8343801522572	97.352	0.64928	97.422	97.152	97.801	0.070465					144	69	3	0	0	0	0.37751	2	26051	26012;26051		7.609	4.0125	1	203910			13052	11378	7305	7305	16684;16685	16685					0.06096558510739669
HHPMTKKQVV	10	Unmodified	_HHPMTKKQVV_					0	0	0		ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENST00000510957.1_1_22:31049909-31050715:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8345336914062	2	602.8346	1203.65465	0.35802	0.00021583	-0.22658	-0.00013659	0.13145	7.9242E-05	602.8342906404007	97.486	0.71298	97.481	97.202	97.915	-0.0055466					153	74	3	0	0	0	0.37751	2	26095	26095;26154		7.609	4.0125	1	302610			13053	11378	7305	7305	16686;16687	16686					0.06096558510739669
HHPMTKKQVV	10	Unmodified	_HHPMTKKQVV_					0	0	0		ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENST00000510957.1_1_22:31049909-31050715:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	602.8346	1203.65465	0.3463	0.00020876	-0.31929	-0.00019248	0.027008	1.6282E-05	602.8343801522572	97.352	0.64928	97.422	97.152	97.801	0.070465	-0.02138	-7.1544E-05	NaN	7.609	144	69	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203910			13054	11378	7305	7305							0.06096558510739669
HHPMTKKQVV	10	Unmodified	_HHPMTKKQVV_					0	0	0		ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENST00000510957.1_1_22:31049909-31050715:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	602.8346	1203.65465	0.35802	0.00021583	-0.22658	-0.00013659	0.13145	7.9242E-05	602.8342906404007	97.486	0.71298	97.481	97.202	97.915	-0.0055466	0.037295	4.0244E-05	NaN	7.609	153	74	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302610			13055	11378	7305	7305							0.06096558510739669
HHRALRFSYH	10	Unmodified	_HHRALRFSYH_					0	0	0		ENSG00000102302|ENST00000375135|FGD1	ENSG00000102302|ENST00000375135|FGD1	ENSG00000102302|ENST00000375135|FGD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.2775573730469	3	441.898767	1322.67447	-0.16441	-7.2654E-05	3.5132	0.0015525	3.3488	0.0014798	442.2350126068209	12.471	0.22666	12.374	12.236	12.463	-0.096607					11	7	2	0	0	0	0.32162	1	155	155		0.15932	0	1	17401			13056	1760	7306	7306	16688	16688					0.026040705657578656
HHRIKKRSLFR	11	Unmodified	_HHRIKKRSLFR_					0	0	0			REV__ENSG00000027847|ENST00000029410|B4GALT7	REV__ENSG00000027847|ENST00000029410|B4GALT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8194580078125	3	493.304016	1476.89022	0.35918	0.00017719	1.1996	0.00059176	1.5588	0.00076894	493.6389210532392	30.675	0.26057	30.703	30.58	30.841	0.027946					13	8	2	0	0	0	0.33348	1	5673	5673		0.40827	0.31342	1	52950	+		13057	13486	7307	7307	16689	16689					0.1708483175038964
HHRSGAYFP	9	Unmodified	_HHRSGAYFP_					0	0	0			REV__ENSG00000052802|ENST00000261507|MSMO1	REV__ENSG00000052802|ENST00000261507|MSMO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2573852539062	2	536.259582	1070.50461	0.48039	0.00025761	-3.792	-0.0020335	-3.3116	-0.0017759	536.2572497949883	80.714	0.39235	80.688	80.475	80.868	-0.026825					25	14	2	0	0	0	0.22596	1	20979	20979		21.747	0	1	262450	+		13058	13573	7308	7308	16690	16690					-0.02782045436674707
HHRSGAYFP	9	Unmodified	_HHRSGAYFP_					0	0	0			REV__ENSG00000052802|ENST00000261507|MSMO1	REV__ENSG00000052802|ENST00000261507|MSMO1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	536.259582	1070.50461	0.46287	0.00024822	-1.9844	-0.0010642	-1.5216	-0.00081596	536.2580784732894	80.702	0.34312	80.702	80.466	80.809	0	0.019431	0.00055561	NaN	21.747	20	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218930	+		13059	13573	7308	7308							-0.02782045436674707
HHRSGAYFP	9	Unmodified	_HHRSGAYFP_					0	0	0			REV__ENSG00000052802|ENST00000261507|MSMO1	REV__ENSG00000052802|ENST00000261507|MSMO1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	536.259582	1070.50461	0.19424	0.00010416	-0.41413	-0.00022208	-0.21989	-0.00011792	536.2589824258969	80.593	0.69166	80.659	80.421	81.112	0.065094	-0.0242	0.0022398	NaN	21.747	45	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227940	+		13060	13573	7308	7308							-0.02782045436674707
HHSYPKPCVF	10	Unmodified	_HHSYPKPCVF_					0	0	0			REV__ENST00000473278.1_1_2:74701986-74702799:-|nuORF	REV__ENST00000473278.1_1_2:74701986-74702799:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.525634765625	3	405.530693	1213.57025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.551	1	18.433	17.933	18.933	-0.11739								0	0	0	0.34209	1	1968	1968		11.518	4.8944	1		+		13061	21381	7309	7309	16691	16691					-0.027993923060193993
HHTLRDQP	8	Unmodified	_HHTLRDQP_					0	0	0			REV__ENST00000248444.9_1_2:219283874-219289052:+|nuORF	REV__ENST00000248444.9_1_2:219283874-219289052:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.292724609375	2	502.25704	1002.49953	0.12253	6.1541E-05	-0.41984	-0.00021087	-0.29731	-0.00014933	502.25672639881657	15.435	0.95332	15.325	15.038	15.992	-0.10981					77	32	3	0	0	0	0.34272	1	1145	1145		7.9102	0	1	856240	+		13062	19513	7310	7310	16692	16692					-0.0016234929929623831
HIAEPNYGK	9	Unmodified	_HIAEPNYGK_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2775268554688	2	514.761623	1027.50869	0.09774	5.0313E-05	0.41829	0.00021532	0.51603	0.00026563	514.7618219849769	19.226	0.64291	19.11	18.762	19.405	-0.11592					38	22	2	0	0	0	0.22215	1	2175	2175		20.415	5.5763	1	76521			13063	6169	7311	7311	16693	16693					-0.003960007336445415
HIAEPNYGK	9	Unmodified	_HIAEPNYGK_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.277587890625	2	514.761623	1027.50869	0.042763	2.2013E-05	0.94356	0.00048571	0.98632	0.00050772	514.7619953240936	19.211	0.63637	19.156	18.848	19.485	-0.055693					35	21	2	0	0	0	0.23767	1	2161	2161		18.146	6.5061	1	70551			13064	6169	7311	7311	16694	16694					-0.003960007336445415
HICVKSCSL	9	Unmodified	_HICVKSCSL_					0	0	0			REV__nc|ENSG00000143502|Q5VX71-4|SUSD4	REV__nc|ENSG00000143502|Q5VX71-4|SUSD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.25018310546875	2	495.24898	988.483407	0.7974	0.00039491	0.97998	0.00048534	1.7774	0.00088025	495.2494500380552	56.368	0.83439	56.368	56.074	56.908	0					66	30	3	0	0	0	0.16283	1	13569	13569		29.082	3.6823	1	2888300	+		13065	23017	7312	7312	16695	16695					-0.011295148520616749
HICVKSCSL	9	Unmodified	_HICVKSCSL_					0	0	0			REV__nc|ENSG00000143502|Q5VX71-4|SUSD4	REV__nc|ENSG00000143502|Q5VX71-4|SUSD4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	495.24898	988.483407	0.89772	0.00044459	1.1749	0.00058188	2.0726	0.0010265	495.2495384945549	56.258	0.81785	56.336	56.117	56.935	0.078674	-0.037069	6.8617E-05	NaN	29.082	69	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2595400	+		13066	23017	7312	7312							-0.011295148520616749
HICVKSCSL	9	Unmodified	_HICVKSCSL_					0	0	0			REV__nc|ENSG00000143502|Q5VX71-4|SUSD4	REV__nc|ENSG00000143502|Q5VX71-4|SUSD4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	495.24898	988.483407	1.0356	0.00051288	1.1186	0.000554	2.1542	0.0010669	495.2495226525811	56.435	0.67948	56.416	56.213	56.892	-0.019081	0.042477	1.2869E-05	NaN	29.082	57	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3102600	+		13067	23017	7312	7312							-0.011295148520616749
HIDEEEQVWTR	11	Unmodified	_HIDEEEQVWTR_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7502746582031	3	481.228395	1440.66336	0.3935	0.00018936	-0.32779	-0.00015774	0.065712	3.1623E-05	481.5624330759794	19.832	0.14128	19.777	19.705	19.846	-0.055693					6	4	2	0	0	0	0.33339	1	2331	2331		1.0136	0.50762	1	13802	+		13068	15885	7313	7313	16696	16696					-0.03934841109730769
HIDIPRVQLLI	11	Unmodified	_HIDIPRVQLLI_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.5750427246094	3	439.606478	1315.79761	-0.20829	-9.1567E-05	-0.88609	-0.00038953	-1.0944	-0.0004811	439.60587048917074	34.213	0.52966	34.28	34.047	34.577	0.066704					26	18	2	0	0	0	0.33303	1	6696	6696		2.4348	0.97967	1	152560			13069	6961	7314	7314	16697	16697					0.15233889173669013
HIDLQECLY	9	Unmodified	_HIDLQECLY_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3271484375	2	567.268424	1132.5223	0.67133	0.00038083	-2.0674	-0.0011728	-1.396	-0.00079193	567.7690013926622	50.831	0.29421	50.831	50.654	50.949	0					20	10	3	0	0	0	0.22061	1	11797	11797		24.021	3.1494	1	157380	+		13070	14227	7315	7315	16698	16698					-0.038665110166903105
HIDLQECLY	9	Unmodified	_HIDLQECLY_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3272705078125	2	567.268424	1132.5223	0.57383	0.00032551	-2.0827	-0.0011814	-1.5088	-0.00085592	567.7687688084056	50.927	0.36203	50.937	50.757	51.119	0.0095634					19	13	2	0	0	0	0.22061	1	11864	11864		24.021	2.2739	1	118650	+		13071	14227	7315	7315	16699	16699					-0.038665110166903105
HIFHLETL	8	Unmodified	_HIFHLETL_					0	0	0		nc|ENSG00000116748|P23109-2|AMPD1;ENSG00000116748|ENST00000520113|AMPD1	nc|ENSG00000116748|P23109-2|AMPD1	nc|ENSG00000116748|P23109-2|AMPD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.26385498046875	2	505.276909	1008.53927	0.40309	0.00020367	-0.93307	-0.00047146	-0.52998	-0.00026779	505.2763527535093	75.967	1.5774	75.935	74.585	76.163	-0.031487					79	57	2	0	0	0	0.39956	1	19581	19581		19.439	1.304	1	218930			13072	2748	7316	7316	16700	16700					0.0353377765144387
HIGNMRDCFV	10	Unmodified	_HIGNMRDCFV_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.2752075195312	2	596.273518	1190.53248	0.099537	5.9351E-05	2.2655	0.0013508	2.365	0.0014102	596.2748658817843	18.889	0.44427	18.831	18.57	19.014	-0.058174					23	15	2	0	0	0	0.40992	1	2099	2099		1.6526	0.45928	1	40946	+		13073	17609	7317	7317	16701	16701					-0.05516226563122473
HIGNMRDCFV	10	Unmodified	_HIGNMRDCFV_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	596.273518	1190.53248	0.29162	0.00017389	2.4653	0.00147	2.7569	0.0016439	596.274911878185	18.703	0.44484	18.703	18.451	18.895	0	-0.10016	9.0598E-05	NaN	1.6526	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33443	+		13074	17609	7317	7317							-0.05516226563122473
HIGNMRDCFV	10	Unmodified	_HIGNMRDCFV_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	596.273518	1190.53248	0.30689	0.00018299	2.4274	0.0014474	2.7343	0.0016304	596.2750798530964	18.994	0.52874	18.876	18.501	19.03	-0.11739	0.072785	4.545E-05	NaN	1.6526	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36041	+		13075	17609	7317	7317							-0.05516226563122473
HIGNMRDCFV	10	Unmodified	_HIGNMRDCFV_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	596.273518	1190.53248	0.099537	5.9351E-05	2.2655	0.0013508	2.365	0.0014102	596.2748658817843	18.889	0.44427	18.831	18.57	19.014	-0.058174	0.027376	-0.00014771	NaN	1.6526	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40946	+		13076	17609	7317	7317							-0.05516226563122473
HIHRGCRSCR	10	Unmodified	_HIHRGCRSCR_					0	0	0			REV__ENSG00000162624|ENST00000356261|LHX8	REV__ENSG00000162624|ENST00000356261|LHX8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.555419921875	3	408.869825	1223.58765	-0.090308	-3.6924E-05	2.4045	0.00098312	2.3142	0.0009462	408.87021018142576	17.853	0.38951	17.793	17.588	17.978	-0.060429					26	13	3	0	0	0	0.3994	1	1749	1749		3.5871	1.9948	1	45461	+		13077	16994	7318	7318	16702	16702					-0.015203752519710179
HIIHGQKK	8	Unmodified	_HIIHGQKK_					0	0	0		ENST00000392952.7_1_10:116194658-116195159:-|nuORF	ENST00000392952.7_1_10:116194658-116195159:-|nuORF	ENST00000392952.7_1_10:116194658-116195159:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7893371582031	2	480.790518	959.566484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.25	1	16.187	15.687	16.687	-0.062534								0	0	0	0.37724	1	1270	1270		2.3027	0.24298	1				13078	10037	7319	7319	16703	16703					0.085083059824683
HIKCLTIKN	9	Unmodified	_HIKCLTIKN_					0	0	0			REV__nc|ENSG00000130783|Q6P9F0-3|CCDC62	REV__nc|ENSG00000130783|Q6P9F0-3|CCDC62	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.8115234375	2	535.312969	1068.61138	0.6281	0.00033623	-0.04873	-2.6086E-05	0.57937	0.00031014	535.3132503572183	48.609	0.58926	48.609	48.238	48.827	0					35	20	3	0	0	0	0.22596	1	11118	11118		21.747	2.3076	1	986040	+		13079	15477	7320	7320	16704	16704					0.07982368733473777
HILAMSRGTI	10	Unmodified	_HILAMSRGTI_					0	0	0		MPP4|p.N441Kfs*2|1|0.06|ENSG00000082126|chr2:201654898-201654899|-/A|frameshift_variant;nc|ENSG00000082126|Q96JB8-2|MPP4;ENSG00000082126|ENST00000409474|MPP4;nc|ENSG00000082126|Q96JB8-5|MPP4;nc|ENSG00000082126|Q96JB8-4|MPP4;nc|ENSG00000082126|Q96JB8-3|MPP4;ENST00000486212.6_1_2:202531091-202563346:-|nuORF;ENST00000483841.2_1_2:202545559-202558746:-|nuORF	MPP4|p.N441Kfs*2|1|0.06|ENSG00000082126|chr2:201654898-201654899|-/A|frameshift_variant	MPP4|p.N441Kfs*2|1|0.06|ENSG00000082126|chr2:201654898-201654899|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3239135742188	2	549.808051	1097.60155	0.47217	0.0002596	-4.2041	-0.0023115	-3.732	-0.0020519	549.8052341647187	35.655	0.68254	35.655	35.382	36.065	0					47	24	3	0	0	0	0.29589	1	7207	7207		17.113	0	1	510960			13080	1192	7321	7321	16705	16705					0.05665180728124142
HILFKRFW	8	Unmodified	_HILFKRFW_					0	0	0		ENST00000354179.8_2_5:176671236-176673694:+|nuORF	ENST00000354179.8_2_5:176671236-176673694:+|nuORF	ENST00000354179.8_2_5:176671236-176673694:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.294921875	2	573.832186	1145.64982	-0.069768	-4.0035E-05	-0.61076	-0.00035048	-0.68053	-0.00039051	573.8316073216739	14.797	0.32655	14.797	14.623	14.949	0					13	11	2	0	0	0	0.34319	1	828	828		5.7604	2.1639	1	42199			13081	9590	7322	7322	16706	16706					0.082820424303236
HILPGAPESL	10	Unmodified	_HILPGAPESL_					0	0	0			REV__ENST00000265678.8_1_6:166825790-166826246:-|nuORF	REV__ENST00000265678.8_1_6:166825790-166826246:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7352905273438	2	517.287474	1032.5604	0.67939	0.00035144	-0.48158	-0.00024911	0.19782	0.00010233	517.2873629383839	50.056	1.0434	50.101	49.776	50.82	0.044888					54	38	2	0	0	0	0.31267	1	11607	11607		14.838	3.198	1	263540	+		13082	19653	7323	7323	16707	16707					0.04541742960282136
HILPGAPESL	10	Unmodified	_HILPGAPESL_					0	0	0			REV__ENST00000265678.8_1_6:166825790-166826246:-|nuORF	REV__ENST00000265678.8_1_6:166825790-166826246:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7353515625	2	517.287474	1032.5604	0.65331	0.00033795	-0.45948	-0.00023768	0.19383	0.00010027	517.2872884492783	50.183	1.0164	50.204	49.67	50.686	0.020691					55	37	2	0	0	0	0.2504	1	11609	11609		26.884	0	1	300500	+		13083	19653	7323	7323	16708	16708					0.04541742960282136
HILRLALTR	9	Unmodified	_HILRLALTR_					0	0	0		nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54;nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8536376953125	2	546.85365	1091.69275	0.45919	0.00025111	-0.017494	-9.5666E-06	0.4417	0.00024154	546.8535796407929	32.847	0.62655	32.847	32.633	33.259	0					42	21	3	0	0	0	0.33276	1	6358	6358		3.9444	0	1	527930			13084	4557	7324	7324	16709	16709					0.1505681248770543
HILYAILTF	9	Unmodified	_HILYAILTF_					0	0	0		ENST00000265138.3_1_5:90678923-90678989:-|nuORF	ENST00000265138.3_1_5:90678923-90678989:-|nuORF	ENST00000265138.3_1_5:90678923-90678989:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.8173828125	2	545.81841	1089.62227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.23	1	118.23	117.73	118.73	0								0	0	0	0.26704	1	30547	30547		0.6015	0	1				13085	9039	7325	7325	16710	16710					0.08104094379405069
HIQAGQCGSQI	11	Unmodified	_HIQAGQCGSQI_					0	0	0		TUBB2B|p.N14S|1|0.11|ENSG00000137285|chr6:3227503-3227503|T/C|missense_variant	TUBB2B|p.N14S|1|0.11|ENSG00000137285|chr6:3227503-3227503|T/C|missense_variant	TUBB2B|p.N14S|1|0.11|ENSG00000137285|chr6:3227503-3227503|T/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.274169921875	2	571.274572	1140.53459	-0.01148	-6.5584E-06	-0.15944	-9.1083E-05	-0.17092	-9.7641E-05	571.2745510141771	13.672	0.60438	13.573	13.362	13.967	-0.099291					33	21	2	0	0	0	0.46655	1	526	526		2.4985	0.84587	1	92356			13086	23405	7326	7326	16711	16711					-0.030054745536517657
HIQGFPIVL	9	Unmodified	_HIQGFPIVL_					0	0	0			REV__ENST00000231368.9_1_5:96360281-96360320:+|nuORF	REV__ENST00000231368.9_1_5:96360281-96360320:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.3031005859375	2	512.302927	1022.5913	0.29731	0.00015232	0.12378	6.3413E-05	0.42109	0.00021573	512.3030478890101	80.885	0.59895	80.885	80.681	81.28	0					63	28	3	0	0	0	0.27532	1	21066	21066		12.532	0	1	165120	+		13087	19464	7327	7327	16712	16712					0.08090941065177049
HIQSISSSDF	10	Unmodified	_HIQSISSSDF_					0	0	0			REV__MAP3K15|p.E1259*|1|0.27|ENSG00000180815|chrX:19361498-19361499|-/A|frameshift_variant	REV__MAP3K15|p.E1259*|1|0.27|ENSG00000180815|chrX:19361498-19361499|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.3404541015625	2	560.767103	1119.51965	0.40773	0.00022864	-2.4744	-0.0013876	-2.0667	-0.0011589	560.7654583943072	92.737	0.093811	92.737	92.696	92.79	0.00046539					8	5	2	0	0	0	0.318	1	24679	24679		7.2892	0	1	43829	+		13088	18119	7328	7328	16713	16713					-0.03532643149992509
HIQSISSSDF	10	Unmodified	_HIQSISSSDF_					0	0	0			REV__MAP3K15|p.E1259*|1|0.27|ENSG00000180815|chrX:19361498-19361499|-/A|frameshift_variant	REV__MAP3K15|p.E1259*|1|0.27|ENSG00000180815|chrX:19361498-19361499|-/A|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.767103	1119.51965	0.20301	0.00011384	2.3271	0.0013049	2.5301	0.0014188	560.7666299802395	92.99	0.053024	92.99	92.957	93.01	0	0.048191	0.0043922	NaN	7.2892	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25218	+		13089	18119	7328	7328							-0.03532643149992509
HIQSISSSDF	10	Unmodified	_HIQSISSSDF_					0	0	0			REV__MAP3K15|p.E1259*|1|0.27|ENSG00000180815|chrX:19361498-19361499|-/A|frameshift_variant	REV__MAP3K15|p.E1259*|1|0.27|ENSG00000180815|chrX:19361498-19361499|-/A|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.767103	1119.51965	0.31521	0.00017676	-1.474	-0.00082656	-1.1588	-0.0006498	561.266963775926	93.009	0.045578	93.098	93.076	93.121	0.089195	0.15613	0.00012917	NaN	7.2892	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32278	+		13090	18119	7328	7328							-0.03532643149992509
HIRDLLKVS	9	Unmodified	_HIRDLLKVS_					0	0	0			REV__ENST00000543855.5_1_12:22643108-22659735:-|nuORF	REV__ENST00000543855.5_1_12:22643108-22659735:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8008422851562	2	540.82984	1079.64513	0.46471	0.00025133	4.0356	0.0021826	4.5003	0.0024339	541.3339540700476	91.545	0.18159	91.545	91.446	91.628	0					20	14	2	0	0	0	0.25938	1	24303	24303		4.3292	1.0479	1	70752	+		13091	13133	7329	7329	16714	16714					0.10849113496919927
HIRHHEIF	8	Unmodified	_HIRHHEIF_					0	0	0			REV__ENST00000571720.2_1_16:68596924-68598598:+|nuORF	REV__ENST00000571720.2_1_16:68596924-68598598:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3170776367188	2	544.79105	1087.56755	0.45306	0.00024682	3.4232	0.0018649	3.8762	0.0021117	544.7925406704543	82.09	0.53076	82.159	81.779	82.31	0.068993					34	22	2	0	0	0	0.28235	1	21393	21393		30.225	4.8255	1	236290	+		13092	18341	7330	7330	16715	16715					0.02726520351347972
HIRWNTKWRRA	11	Unmodified	_HIRWNTKWRRA_					0	0	0		ENSG00000005981|ENST00000325885|ASB4	ENSG00000005981|ENST00000325885|ASB4	ENSG00000005981|ENST00000325885|ASB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3006286621094	3	508.620004	1522.83818	0.302	0.0001536	-0.79666	-0.0004052	-0.49466	-0.00025159	508.61955076433526	32.871	0.54149	32.871	32.692	33.233	0					36	18	3	0	0	0	0.45202	2	6304	6304;6383		4.4062	3.0765	1	268360			13093	348	7331	7331	16716;16717	16716					0.0976766833664442
HIRWNTKWRRA	11	Unmodified	_HIRWNTKWRRA_					0	0	0		ENSG00000005981|ENST00000325885|ASB4	ENSG00000005981|ENST00000325885|ASB4	ENSG00000005981|ENST00000325885|ASB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3009033203125	3	508.620004	1522.83818	0.35206	0.00017906	-1.1087	-0.00056389	-0.7566	-0.00038482	508.61945547013227	32.72	0.4436	32.775	32.59	33.033	0.055309					28	15	2	0	0	0	0.33236	1	6265	6265		4.4062	3.1913	1	262320			13094	348	7331	7331	16718	16718					0.0976766833664442
HIRWNTKWRRA	11	Unmodified	_HIRWNTKWRRA_					0	0	0		ENSG00000005981|ENST00000325885|ASB4	ENSG00000005981|ENST00000325885|ASB4	ENSG00000005981|ENST00000325885|ASB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3005676269531	3	508.620004	1522.83818	0.25501	0.0001297	-0.71649	-0.00036442	-0.46149	-0.00023472	508.6196202817255	32.872	0.43726	32.927	32.682	33.119	0.054375					36	15	3	0	0	0	0.45202	1	6316	6316		4.4062	1.5629	1	247030			13095	348	7331	7331	16719	16719					0.0976766833664442
HISCQQKQGAS	11	Unmodified	_HISCQQKQGAS_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;DOCK8|p.N1266Ifs*5|1|0.21|ENSG00000107099|chr9:418160-418160|G/-|frameshift_variant	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.7852172851562	2	593.785304	1185.55605	0.43112	0.00025599	0.14934	8.8677E-05	0.58046	0.00034467	593.785241463846	82.179	2.4243	82.248	81.44	83.865	0.068993					179	99	2	0	0	0	0.44828	1	21472	21472		4.897	0	1	804010			13096	2110	7332	7332	16720	16720					-0.029300895249207315
HISLTPVKS	9	Unmodified	_HISLTPVKS_					0	0	0		ENST00000536373.5_1_18:33718798-33725056:+|nuORF	ENST00000536373.5_1_18:33718798-33725056:+|nuORF	ENST00000536373.5_1_18:33718798-33725056:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.78277587890625	2	491.290017	980.565481	0.21511	0.00010568	0.008433	4.143E-06	0.22354	0.00010982	491.2898329999925	26.276	1.2521	26.276	25.955	27.207	0					71	43	2	0	0	0	0.2719	1	4365	4365		13.042	0.80181	1	287260			13097	11681	7333	7333	16721	16721					0.07442046822905013
HISLTPVKS	9	Unmodified	_HISLTPVKS_					0	0	0		ENST00000536373.5_1_18:33718798-33725056:+|nuORF	ENST00000536373.5_1_18:33718798-33725056:+|nuORF	ENST00000536373.5_1_18:33718798-33725056:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.78289794921875	2	491.290017	980.565481	0.3591	0.00017642	-0.2538	-0.00012469	0.10529	5.173E-05	491.2897730806143	26.283	1.1671	26.261	25.923	27.09	-0.022238					59	41	2	0	0	0	0.2719	1	4369	4369		13.042	0	1	370870			13098	11681	7333	7333	16722	16722					0.07442046822905013
HISTPLVSK	9	Unmodified	_HISTPLVSK_					0	0	0		nc|ENSG00000174516|Q8N2H9-4|PELI3;nc|ENSG00000174516|Q8N2H9-2|PELI3;ENSG00000174516|ENST00000320740|PELI3	nc|ENSG00000174516|Q8N2H9-4|PELI3	nc|ENSG00000174516|Q8N2H9-4|PELI3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2900390625	2	491.290017	980.565481	0.21511	0.00010568	0.008433	4.143E-06	0.22354	0.00010982	491.2898329999925	26.276	1.2521	26.276	25.955	27.207	0					71	43	2	0	0	0	0.069258	1	4305	4305		45.74	9.2337	1	287260			13099	6801	7334	7334	16723	16723					0.07442046822916382
HISTPLVSK	9	Unmodified	_HISTPLVSK_					0	0	0		nc|ENSG00000174516|Q8N2H9-4|PELI3;nc|ENSG00000174516|Q8N2H9-2|PELI3;ENSG00000174516|ENST00000320740|PELI3	nc|ENSG00000174516|Q8N2H9-4|PELI3	nc|ENSG00000174516|Q8N2H9-4|PELI3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.2900390625	2	491.290017	980.565481	0.20172	9.9105E-05	-0.13967	-6.862E-05	0.062051	3.0485E-05	491.2898320077672	26.223	1.0971	26.184	25.871	26.968	-0.038671					56	38	2	0	0	0	0.048637	1	4308	4308		53.404	9.6316	1	317580			13100	6801	7334	7334	16724	16724					0.07442046822916382
HITFLGRN	8	Unmodified	_HITFLGRN_					0	0	0		ENST00000512339.5_1_4:89777138-89859370:-|nuORF	ENST00000512339.5_1_4:89777138-89859370:-|nuORF	ENST00000512339.5_1_4:89777138-89859370:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.27752685546875	2	479.266876	956.519199	0.49517	0.00023732	-1.3881	-0.00066525	-0.89289	-0.00042793	479.26742895089507	77.469	0.77731	77.469	77.228	78.005	0					49	28	3	0	0	0	0.44389	1	19949	19949		7.9102	0.62092	1	125010			13101	11394	7335	7335	16725	16725					0.03920026711477931
HITFLGRN	8	Unmodified	_HITFLGRN_					0	0	0		ENST00000512339.5_1_4:89777138-89859370:-|nuORF	ENST00000512339.5_1_4:89777138-89859370:-|nuORF	ENST00000512339.5_1_4:89777138-89859370:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2773742675781	2	479.266876	956.519199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.993	1	76.046	75.546	76.546	0.053413								0	0	0	0.36486	1	19543	19543		7.9102	0	1				13102	11394	7335	7335	16726	16726					0.03920026711477931
HITVQNMMLR	10	Unmodified	_HITVQNMMLR_					0	0	0		ENST00000402768.1_1_6:139935577-139935790:-|nuORF	ENST00000402768.1_1_6:139935577-139935790:-|nuORF	ENST00000402768.1_1_6:139935577-139935790:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.52044677734375	3	414.88637	1241.63728	0.25589	0.00010616	1.5795	0.0006553	1.8354	0.00076147	414.88708405132184	49.656	0.13146	49.701	49.645	49.776	0.044888					6	4	2	0	0	0	0.31889	1	11463	11463		1.5923	0.13716	1	57892			13103	10203	7336	7336	16727	16727					0.02612894913454511
HIVMKSDKE	9	Unmodified	_HIVMKSDKE_					0	0	0		ENST00000480956.1_1_7:32528235-32529977:-|nuORF;ENSG00000106355|ENST00000450169|LSM5	ENST00000480956.1_1_7:32528235-32529977:-|nuORF	ENST00000480956.1_1_7:32528235-32529977:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3202514648438	2	543.784241	1085.55393	0.38201	0.00020773	-1.8205	-0.00098997	-1.4385	-0.00078224	543.7831020145798	39.275	0.32163	39.367	39.226	39.548	0.09267					14	11	2	0	0	0	0.22596	1	8228	8228		21.747	2.3847	1	104620			13104	2075	7337	7337	16728	16728					0.014574817372704274
HIWHIRNFTQF	11	Unmodified	_HIWHIRNFTQF_					0	0	0		MEP1B|p.F573*|1|0.04|ENSG00000141434|chr18:32215220-32215226|TTATAAA/-|frameshift_variant;ENSG00000141434|ENST00000269202|MEP1B	MEP1B|p.F573*|1|0.04|ENSG00000141434|chr18:32215220-32215226|TTATAAA/-|frameshift_variant	MEP1B|p.F573*|1|0.04|ENSG00000141434|chr18:32215220-32215226|TTATAAA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2620544433594	3	500.261594	1497.76295	0.032656	1.6337E-05	0.49031	0.00024528	0.52297	0.00026162	500.26213333630966	14.324	0.55422	14.22	13.961	14.516	-0.10466					57	18	5	0	0	0	0.46554	1	674	674		2.6312	1.4164	1	764600			13105	4378	7338	7338	16729	16729					0.033980660855149836
HIYIQVKEF	9	Unmodified	_HIYIQVKEF_					0	0	0		nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6	nc|ENSG00000138190|Q8TAG9-2|EXOC6	nc|ENSG00000138190|Q8TAG9-2|EXOC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3502807617188	2	588.824224	1175.63389	0.80277	0.00047269	-1.0871	-0.00064011	-0.28433	-0.00016742	588.8235665904355	37.404	0.43452	37.404	37.181	37.616	0					33	15	3	0	0	0	0.24739	1	7631	7631		13.508	2.684	1	387330			13106	4130	7339	7339	16730	16730					0.0531029140274768
HIYIQVKEF	9	Unmodified	_HIYIQVKEF_					0	0	0		nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6	nc|ENSG00000138190|Q8TAG9-2|EXOC6	nc|ENSG00000138190|Q8TAG9-2|EXOC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.3505859375	2	588.824224	1175.63389	0.46362	0.00027299	-0.30299	-0.00017841	0.16063	9.4583E-05	588.8241198458076	37.291	0.50791	37.384	37.17	37.678	0.093018					40	18	3	0	0	0	0.24739	1	7592	7592		13.508	6.2187	1	394160			13107	4130	7339	7339	16731	16731					0.0531029140274768
HKAVKSYVQW	10	Unmodified	_HKAVKSYVQW_					0	0	0			REV__ENST00000222573.4_1_7:20449902-20450115:+|nuORF	REV__ENST00000222573.4_1_7:20449902-20450115:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.8189697265625	2	623.340572	1244.66659	0.13965	8.7047E-05	-1.5967	-0.00099531	-1.4571	-0.00090827	623.8413162082456	22.546	0.17315	22.546	22.476	22.649	0					6	5	2	0	0	0	0.41168	1	3177	3177		1.3295	0	1	17220	+		13108	19431	7340	7340	16732	16732					0.0540449852560414
HKAVKSYVQW	10	Unmodified	_HKAVKSYVQW_					0	0	0			REV__ENST00000222573.4_1_7:20449902-20450115:+|nuORF	REV__ENST00000222573.4_1_7:20449902-20450115:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	623.340572	1244.66659	0.13965	8.7047E-05	-1.5967	-0.00099531	-1.4571	-0.00090827	623.8413162082456	22.546	0.17315	22.546	22.476	22.649	0	0	0	NaN	1.3295	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17220	+		13109	19431	7340	7340							0.0540449852560414
HKCKIPPSA	9	Unmodified	_HKCKIPPSA_					0	0	0		ENSG00000243716|ENST00000424340|NPIPB5;ENSG00000185864|ENST00000682606|NPIPB4;ENSG00000169203|ENST00000550665|NPIPB12;ENSG00000254206|ENST00000698511|NPIPB11;nc|ENSG00000243716|C9JG80|NPIPB4;ENSG00000198064|ENST00000697092|NPIPB13;nc|ENSG00000169246|Q92617|NPIPB3;nc|ENSG00000169246|Q92617-6|NPIPB3;nc|ENSG00000169246|Q92617-5|NPIPB3;ENSG00000234719|ENST00000399147|NPIPB2;nc|ENSG00000169246|Q92617-3|NPIPB3;nc|ENSG00000169246|Q92617-2|NPIPB3;ENSG00000196436|ENST00000692376|NPIPB15;ENSG00000196993|ENST00000357796|NPIPB9;ENSG00000255524|ENST00000683297|NPIPB8;ENSG00000198156|ENST00000695563|NPIPB6;ENSG00000233232|ENST00000452313|NPIPB7	ENSG00000243716|ENST00000424340|NPIPB5	ENSG00000243716|ENST00000424340|NPIPB5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2678527832031	2	490.770937	979.527321	0.10378	5.0934E-05	-1.5377	-0.00075467	-1.4339	-0.00070373	490.77021290489	73.778	0.71028	73.778	73.417	74.127	0					32	24	2	0	0	0	0.24848	1	18873	18873		13.906	5.9959	1	139380			13110	8560	7341	7341	16733	16733					0.03673837636586086
HKEKTRKER	9	Unmodified	_HKEKTRKER_					0	0	0		nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.S1017Ffs*5|1|0.07|ENSG00000167258|chr17:39520040-39520041|-/TTCTCAAATTTGTA|frameshift_variant;CDK12|p.I1188Tfs*27|1|0.35|ENSG00000167258|chr17:39526119-39526119|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.369873046875	2	606.352003	1210.68945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.66	1	112.67	112.17	113.17	0.0131								0	0	0	0.26044	1	29316	29316		2.9952	1.3426	1				13111	6163	7342	7342	16734	16734					0.0925351764306015
HKFKDLLT	8	Unmodified	_HKFKDLLT_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.25799560546875	2	501.292559	1000.57057	0.14803	7.4209E-05	-2.5504	-0.0012785	-2.4024	-0.0012043	501.2907379510216	81.97	0.56154	82.039	81.566	82.128	0.068993					31	24	2	0	0	0	0.34247	1	21383	21383		8.5933	4.264	1	132920	+		13112	22330	7343	7343	16735	16735					0.07030350685522535
HKFLCLRV	8	Unmodified	_HKFLCLRV_					0	0	0		nc|ENSG00000164830|Q8N573-2|OXR1;nc|ENSG00000164830|Q8N573-5|OXR1;ENSG00000164830|ENST00000517566|OXR1;nc|ENSG00000164830|Q8N573|OXR1;nc|ENSG00000164830|Q8N573-6|OXR1	nc|ENSG00000164830|Q8N573-2|OXR1	nc|ENSG00000164830|Q8N573-2|OXR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7689514160156	2	508.297122	1014.57969	0.079548	4.0434E-05	-0.91238	-0.00046376	-0.83283	-0.00042332	508.29883581237493	16.556	0.53026	16.441	16.219	16.749	-0.11434					34	18	3	0	0	0	0.34408	1	1391	1391		2.3027	0	1	41390			13113	5882	7344	7344	16736	16736					0.07298420770189296
HKHFIVPYLI	10	Unmodified	_HKHFIVPYLI_					0	0	0			REV__ENSG00000164975|ENST00000380821|SNAPC3	REV__ENSG00000164975|ENST00000380821|SNAPC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8724975585938	2	633.871508	1265.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.68	1	115.68	115.18	116.18	0								0	0	0	0.38201	1	29972	29972		0.45834	0	1		+		13114	17197	7345	7345	16737	16737					0.10622849944752488
HKHSVPVYF	9	Unmodified	_HKHSVPVYF_					0	0	0		ENSG00000113273|ENST00000264914|ARSB;ENST00000521011.1_1_5:78076222-78079308:-|nuORF	ENSG00000113273|ENST00000264914|ARSB	ENSG00000113273|ENST00000264914|ARSB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2966918945312	2	557.295633	1112.57671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.97	1	103.97	103.47	104.47	0								0	0	0	0.25858	1	27610	27610		3.5965	0.60125	1				13115	2487	7346	7346	16738	16738					0.024928689170337748
HKHTLKTKPPP	11	Unmodified	_HKHTLKTKPPP_					0	0	0			REV__ENST00000512339.5_1_4:89777138-89859370:-|nuORF	REV__ENST00000512339.5_1_4:89777138-89859370:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.3845825195312	2	642.382771	1282.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.959	1	93.048	92.548	93.548	0.089195								0	0	0	0.36517	1	24741	24741		4.897	0.95262	1		+		13116	21816	7347	7347	16739	16739					0.12092449342367217
HKHVHVLLHI	10	Unmodified	_HKHVHVLLHI_					0	0	0			REV__ENSG00000111647|ENST00000279907|BLTP3B	REV__ENSG00000111647|ENST00000279907|BLTP3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8841247558594	3	411.584008	1231.73019	0.41733	0.00017177	0.13793	5.677E-05	0.55527	0.00022854	411.5838840799422	20.205	0.41053	20.151	19.818	20.228	-0.054222					20	14	2	0	0	0	0.32122	1	2466	2466		2.086	0.17963	1	94628	+		13117	14728	7348	7348	16740	16740					0.12359903753372237
HKIRPHIT	8	Unmodified	_HKIRPHIT_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.9690856933594	2	501.303793	1000.59303	0.11019	5.5237E-05	0.96285	0.00048268	1.073	0.00053792	501.3043151106908	96.269	0.81114	96.269	95.728	96.539	0					123	78	2	0	0	0	0.34092	1	25673	25673		8.5933	8.5933	1	88598			13118	707	7349	7349	16741	16741					0.09275994873792115
HKKKIGLLF	9	Unmodified	_HKKKIGLLF_					0	0	0			REV__ENST00000395686.7_1_14:53118958-53119009:-|nuORF	REV__ENST00000395686.7_1_14:53118958-53119009:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3364868164062	2	542.355494	1082.69644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.854	1	97.916	97.416	98.416	0.061516								0	0	0	0.25352	1	26184	26184		5.2307	0.47466	1		+		13119	20641	7350	7350	16742	16742					0.1583948226159464
HKKKIGLLF	9	Unmodified	_HKKKIGLLF_					0	0	0			REV__ENST00000395686.7_1_14:53118958-53119009:-|nuORF	REV__ENST00000395686.7_1_14:53118958-53119009:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.33642578125	2	542.355494	1082.69644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.866	1	97.859	97.359	98.359	-0.0068283								0	0	0	0.25352	1	26206	26206		5.2307	0.47466	1		+		13120	20641	7350	7350	16743	16743					0.1583948226159464
HKKVKHPAG	9	Unmodified	_HKKVKHPAG_					0	0	0			REV__ENSG00000171495|ENST00000399564|MROH2B	REV__ENSG00000171495|ENST00000399564|MROH2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7900695800781	2	501.303793	1000.59303	0.039248	1.9675E-05	-1.053	-0.00052788	-1.0138	-0.0005082	501.30332256094874	14.201	0.24937	14.201	14.086	14.335	0					11	8	2	0	0	0	0.25988	1	693	693		3.9444	0.94915	1	33606	+		13121	17643	7351	7351	16744	16744					0.09275994873803484
HKLFSQRQ	8	Unmodified	_HKLFSQRQ_					0	0	0		ENST00000217086.8_2_20:50408485-50408629:-|nuORF	ENST00000217086.8_2_20:50408485-50408629:-|nuORF	ENST00000217086.8_2_20:50408485-50408629:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.804931640625	2	522.290882	1042.56721	0.15622	8.1594E-05	0.42102	0.0002199	0.57725	0.00030149	522.2913098543281	14.563	0.62094	14.563	14.279	14.9	0					62	21	4	0	0	0	0.43302	1	736	736		11.64	3.7301	1	254500			13122	8821	7352	7352	16745	16745					0.047631006314986735
HKLRELLNIM	10	Unmodified	_HKLRELLNIM_					0	0	0			REV__ENSG00000135249|ENST00000257700|RINT1	REV__ENSG00000135249|ENST00000257700|RINT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.871337890625	2	633.871182	1265.72781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.47	1	112.46	111.96	112.96	-0.015625								0	0	0	0.38202	1	29256	29256		0.40072	0	1		+		13123	15729	7353	7353	16746	16746					0.10557687233358592
HKLREPSRR	9	Unmodified	_HKLREPSRR_					0	0	0			REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8455810546875	2	589.846887	1177.67922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.44	1	119.47	118.97	119.97	0.027756								0	0	0	0.26513	1	30892	30892		1.4819	0.79152	1		+		13124	14807	7354	7354	16747	16747					0.09748954708493329
HKLTGPARLW	10	Unmodified	_HKLTGPARLW_					0	0	0			REV__ENST00000529978.1_1_8:12870155-12879550:+|nuORF	REV__ENST00000529978.1_1_8:12870155-12879550:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8452758789062	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.19	1	116.17	115.67	116.67	-0.022781								0	0	0	0.38187	1	30106	30106		1.3295	0.72803	1		+		13125	19215	7355	7355	16748	16748					0.09028222108076989
HKLTHGVMNKE	11	Unmodified	_HKLTHGVMNKE_					0	0	0		SETD2|p.R2510H|1|0.32|ENSG00000181555|chr3:47017642-47017642|C/T|missense_variant	SETD2|p.R2510H|1|0.32|ENSG00000181555|chr3:47017642-47017642|C/T|missense_variant	SETD2|p.R2510H|1|0.32|ENSG00000181555|chr3:47017642-47017642|C/T|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.35888671875	2	647.340246	1292.66594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104	1	104.01	103.51	104.51	0.0082703								0	0	0	0.35034	1	27631	27631		8.1555	3.2585	1				13126	23375	7356	7356	16749	16749					0.03131335814259728
HKMVREANIK	10	Unmodified	_HKMVREANIK_					0	0	0		nc|ENSG00000127328|Q96QF0-3|RAB3IP;nc|ENSG00000127328|Q96QF0-4|RAB3IP;ENSG00000127328|ENST00000247833|RAB3IP;nc|ENSG00000127328|Q96QF0|RAB3IP;nc|ENSG00000127328|Q96QF0-5|RAB3IP;nc|ENSG00000127328|Q96QF0-7|RAB3IP;nc|ENSG00000127328|Q96QF0-6|RAB3IP	nc|ENSG00000127328|Q96QF0-3|RAB3IP	nc|ENSG00000127328|Q96QF0-3|RAB3IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.88909912109375	3	409.232647	1224.67611	-0.73751	-0.00030181	0.39111	0.00016006	-0.34639	-0.00014175	409.2329060504925	35.171	0.58308	35.249	35.005	35.588	0.077377					39	20	3	0	0	0	0.3183	1	7055	7055		5.4027	2.9042	1	228500			13127	3312	7357	7357	16750	16750					0.07275943539480068
HKNIVRLH	8	Unmodified	_HKNIVRLH_					0	0	0		ENST00000442838.2_1_8:123781530-123781986:+|nuORF;nc|ENSG00000164885|Q00535-2|CDK5;ENSG00000164885|ENST00000485972|CDK5	ENST00000442838.2_1_8:123781530-123781986:+|nuORF	ENST00000442838.2_1_8:123781530-123781986:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.66912841796875	2	508.809242	1015.60393	0.09142	4.6516E-05	0.64455	0.00032795	0.73597	0.00037447	508.80981280862267	18.298	0.29304	18.18	18.065	18.358	-0.11739					14	9	2	0	0	0	0.34408	1	1906	1906		2.3027	0.82083	1	26455			13128	5890	7358	7358	16751	16751					0.09675397248076933
HKPKTLTDTLI	11	Unmodified	_HKPKTLTDTLI_					0	0	0		ENSG00000162779|ENST00000367618|AXDND1;ENST00000461179.2_1_1:179339175-179437601:+|nuORF	ENSG00000162779|ENST00000367618|AXDND1	ENSG00000162779|ENST00000367618|AXDND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.8726806640625	2	633.874445	1265.73434	0.19437	0.0001232	-0.92525	-0.00058649	-0.73088	-0.00046329	633.8715454238442	112.96	0.6295	112.94	112.82	113.45	-0.017311					112	77	2	0	0	0	0.47742	1	29402	29402		1.0715	0	1	49706			13129	5617	7359	7359	16752	16752					0.11209903665758247
HKQEKKRQ	8	Unmodified	_HKQEKKRQ_					0	0	0		ENSG00000102055|ENST00000378131|PPP1R2C	ENSG00000102055|ENST00000378131|PPP1R2C	ENSG00000102055|ENST00000378131|PPP1R2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2701416015625	2	541.314889	1080.61522	0.11486	6.2177E-05	1.6192	0.0008765	1.7341	0.00093868	541.3145630815977	12.304	0.20459	12.236	12.14	12.345	-0.06806					12	6	3	0	0	0	0.34438	1	62	62		0.6015	0	1	24193			13130	1743	7360	7360	16753	16753					0.0781417455157225
HKQNRQGL	8	Unmodified	_HKQNRQGL_					0	0	0			REV__nc|ENSG00000165973|Q92832-2|NELL1	REV__nc|ENSG00000165973|Q92832-2|NELL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7978820800781	2	490.772857	979.531161	-0.095231	-4.6737E-05	-0.00016057	-7.8804E-08	-0.095391	-4.6815E-05	490.7729008324461	12.87	0.29419	12.803	12.671	12.965	-0.067496					14	9	2	0	0	0	0.34408	1	294	294		2.3027	1.8444	1	55201	+		13131	17284	7361	7361	16754	16754					0.040576434546551354
HKRRLERERRK	11	Unmodified	_HKRRLERERRK_					0	0	0			REV__ENST00000578653.1_1_17:27849339-27857712:+|nuORF	REV__ENST00000578653.1_1_17:27849339-27857712:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.9852905273438	3	521.985346	1562.93421	0.32631	0.00017033	-0.52916	-0.00027621	-0.20285	-0.00010588	521.9852089023699	93.861	0.52528	93.861	93.508	94.033	0					102	41	3	0	0	0	0.48495	1	25003	25003		0.08335	0.08335	1	295360	+		13132	16906	7362	7362	16755	16755					0.17525816176703302
HKRRLERERRK	11	Unmodified	_HKRRLERERRK_					0	0	0			REV__ENST00000578653.1_1_17:27849339-27857712:+|nuORF	REV__ENST00000578653.1_1_17:27849339-27857712:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.9854125976562	3	521.985346	1562.93421	0.32695	0.00017067	-0.18143	-9.4702E-05	0.14553	7.5964E-05	521.9852442850078	94.53	0.84879	94.613	94.123	94.972	0.082779					252	68	5	0	0	0	0.48486	1	25205	25205		0.094841	0.094841	1	1052800	+		13133	16906	7362	7362	16756	16756					0.17525816176703302
HKRRLERERRK	11	Unmodified	_HKRRLERERRK_					0	0	0			REV__ENST00000578653.1_1_17:27849339-27857712:+|nuORF	REV__ENST00000578653.1_1_17:27849339-27857712:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	521.985346	1562.93421	0.32631	0.00017033	-0.52916	-0.00027621	-0.20285	-0.00010588	521.9852089023699	93.861	0.52528	93.861	93.508	94.033	0	0.032332	-2.3913E-05	NaN	0.08335	102	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295360	+		13134	16906	7362	7362							0.17525816176703302
HKRRLERERRK	11	Unmodified	_HKRRLERERRK_					0	0	0			REV__ENST00000578653.1_1_17:27849339-27857712:+|nuORF	REV__ENST00000578653.1_1_17:27849339-27857712:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	521.985346	1562.93421	0.53359	0.00027853	-0.61221	-0.00031956	-0.078614	-4.1035E-05	521.9851158130778	93.781	0.65919	93.78	93.372	94.031	-0.00051117	-0.048042	-0.00015396	NaN	0.08335	146	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	616310	+		13135	16906	7362	7362							0.17525816176703302
HKSCLKKA	8	Unmodified	_HKSCLKKA_					0	0	0			REV__nc|ENSG00000054219|O60449-3|LY75	REV__nc|ENSG00000054219|O60449-3|LY75	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7657470703125	2	457.765655	913.516756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.038	1	74.038	73.538	74.538	0								0	0	0	0.36486	1	18952	18952		7.9102	2.6795	1		+		13136	22885	7363	7363	16757	16757					0.05653854982142548
HKSNTVKPFN	10	Unmodified	_HKSNTVKPFN_					0	0	0			REV__ENST00000514332.5_1_5:179047997-179048084:-|nuORF	REV__ENST00000514332.5_1_5:179047997-179048084:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3128051757812	2	586.314554	1170.61456	-0.042284	-2.4792E-05	0.19361	0.00011352	0.15133	8.8725E-05	586.3143943886176	98.783	0.29945	98.783	98.59	98.889	0					52	34	2	0	0	0	0.39935	1	26408	26408		3.5965	0	1	108360	+		13137	21834	7364	7364	16758	16758					0.03607335111860266
HKSVAHVTK	9	Unmodified	_HKSVAHVTK_					0	0	0		ENST00000401715.2_1_6:10118966-10119482:+|nuORF	ENST00000401715.2_1_6:10118966-10119482:+|nuORF	ENST00000401715.2_1_6:10118966-10119482:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.8059387207031	2	503.793258	1005.57196	0.18361	9.2501E-05	0.33775	0.00017016	0.52136	0.00026266	503.7932671594475	26.166	0.80442	26.166	25.925	26.729	0					54	27	3	0	0	0	0.25989	1	4325	4325		14.838	0	1	560020			13138	10192	7365	7365	16759	16759					0.06939984774282948
HKSVAHVTK	9	Unmodified	_HKSVAHVTK_					0	0	0		ENST00000401715.2_1_6:10118966-10119482:+|nuORF	ENST00000401715.2_1_6:10118966-10119482:+|nuORF	ENST00000401715.2_1_6:10118966-10119482:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.805908203125	2	503.793258	1005.57196	0.33765	0.0001701	0.047383	2.3871E-05	0.38503	0.00019397	503.79319011437804	26.218	0.81672	26.196	25.97	26.786	-0.022238					58	28	3	0	0	0	0.23767	1	4341	4341		18.146	2.2992	1	622240			13139	10192	7365	7365	16760	16760					0.06939984774282948
HKTASQRL	8	Unmodified	_HKTASQRL_					0	0	0		ENSG00000110330|ENST00000227758|BIRC2	ENSG00000110330|ENST00000227758|BIRC2	ENSG00000110330|ENST00000227758|BIRC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2807922363281	2	470.769783	939.525013	0.38281	0.00018022	3.6767	0.0017309	4.0596	0.0019111	470.77181467251916	82.996	0.26403	82.976	82.842	83.106	-0.020584					11	9	2	0	0	0	0.34198	1	21711	21711		10.824	4.4698	1	61196			13140	2306	7366	7366	16761	16761					0.052831252231385406
HKTIKKEIQDM	11	Unmodified	_HKTIKKEIQDM_					0	0	0		ENSG00000165370|ENST00000651716|GPR101	ENSG00000165370|ENST00000651716|GPR101	ENSG00000165370|ENST00000651716|GPR101	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.6082458496094	3	457.586867	1369.73877	0.19568	8.9538E-05	1.9273	0.00088191	2.123	0.00097144	457.5880741440611	89.687	0.27522	89.778	89.624	89.9	0.090569					41	21	3	0	0	0	0.3325	1	23761	23761		4.1166	0.52957	1	71820			13141	5954	7367	7367	16762	16762					0.06869044816994574
HKTRRKYE	8	Unmodified	_HKTRRKYE_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.7896118164062	2	559.314889	1116.61522	0.26469	0.00014805	-0.75693	-0.00042336	-0.49223	-0.00027531	559.3145939249815	17.416	0.53819	17.416	17.151	17.69	0					29	18	2	0	0	0	0.34337	1	1562	1562		5.2307	5.2307	1	62652	+		13142	18449	7368	7368	16763	16763					0.061581745515468356
HKWTVKQAIR	10	Unmodified	_HKWTVKQAIR_					0	0	0			REV__RALA|p.Y153Ifs*27|1|0.13|ENSG00000006451|chr7:39696817-39696818|-/ATTATAAGGATAGCACAGAAAGT|frameshift_variant	REV__RALA|p.Y153Ifs*27|1|0.13|ENSG00000006451|chr7:39696817-39696818|-/ATTATAAGGATAGCACAGAAAGT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8718872070312	2	633.875114	1265.73567	-0.062415	-3.9564E-05	-1.3506	-0.0008561	-1.413	-0.00089567	634.3781388004077	113.03	0.31796	113.03	112.94	113.26	0					66	39	2	0	0	0	0.41168	1	29353	29353		1.3295	0.25807	1	44539	+		13143	23295	7369	7369	16764	16764					0.11343582545146091
HKWTVKQAIR	10	Unmodified	_HKWTVKQAIR_					0	0	0			REV__RALA|p.Y153Ifs*27|1|0.13|ENSG00000006451|chr7:39696817-39696818|-/ATTATAAGGATAGCACAGAAAGT|frameshift_variant	REV__RALA|p.Y153Ifs*27|1|0.13|ENSG00000006451|chr7:39696817-39696818|-/ATTATAAGGATAGCACAGAAAGT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8718872070312	2	633.875114	1265.73567	-0.062415	-3.9564E-05	-1.3506	-0.0008561	-1.413	-0.00089567	634.3781388004077	113.03	0.31796	113.03	112.94	113.26	0					66	39	2	0	0	0	0.32139	1	29353	29353		1.3295	0.25807	1	44539	+		13144	23295	7369	7369	16765	16765					0.11343582545146091
HKYRVFYI	8	Unmodified	_HKYRVFYI_					0	0	0			REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.298095703125	2	563.313826	1124.6131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.743	1	12.676	12.176	13.176	-0.067496								0	0	0	0.37992	1	217	217		0.79363	0.19213	1		+		13145	16658	7370	7370	16766	16766					0.05577745813729962
HLAPPQPAK	9	Unmodified	_HLAPPQPAK_					0	0	0		nc|ENSG00000172348|Q14206|RCAN2;ENSG00000172348|ENST00000371374|RCAN2	nc|ENSG00000172348|Q14206|RCAN2	nc|ENSG00000172348|Q14206|RCAN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7638244628906	2	479.777077	957.5396	0.0037607	1.8043E-06	-1.4252	-0.0006838	-1.4215	-0.00068199	479.77616777508746	19.421	0.75331	19.421	19.095	19.849	0					44	26	2	0	0	0	0.14076	1	2191	2191		32.305	11.852	1	81042			13146	6626	7371	7371	16767	16767					0.05913197371273782
HLAPVYHP	8	Unmodified	_HLAPVYHP_					0	0	0			REV__ENST00000343666.5_1_9:140099411-140099612:-|nuORF	REV__ENST00000343666.5_1_9:140099411-140099612:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.6080017089844	2	467.250695	932.486836	0.056742	2.6513E-05	-1.3483	-0.00062999	-1.2915	-0.00060347	467.2501605730732	90.488	0.26268	90.488	90.386	90.648	0					31	18	2	0	0	0	0.34297	1	24016	24016		2.8892	0	1	159900	+		13147	20134	7372	7372	16768	16768					0.017892393084594005
HLCCPRCPE	9	Unmodified	_HLCCPRCPE_					0	0	0		ENSG00000101938|ENST00000372042|CHRDL1	ENSG00000101938|ENST00000372042|CHRDL1	ENSG00000101938|ENST00000372042|CHRDL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.321533203125	2	529.222439	1056.43033	0.22568	0.00011944	0.8417	0.00044545	1.0674	0.00056488	529.2227641552414	28.654	0.64738	28.655	28.158	28.805	0.0004673					35	22	2	0	0	0	0.26145	1	4904	4904		2.0598	0	1	164290			13148	1730	7373	7373	16769	16769					-0.09563215906382538
HLECINSDWK	10	Unmodified	_HLECINSDWK_					0	0	0			REV__RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	REV__RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.215576171875	3	415.529129	1243.56556	0.064341	2.6736E-05	1.3373	0.00055569	1.4016	0.00058242	415.52972662467846	22.689	0.55659	22.602	22.352	22.909	-0.087608					24	19	2	0	0	0	0.31629	1	3157	3157		5.7834	2.1964	1	43773	+		13149	17806	7374	7374	16770	16770					-0.046483212394377915
HLEEQTPR	8	Unmodified	_HLEEQTPR_					0	0	0		nc|ENSG00000102901|Q96BT3-2|CENPT;ENST00000565157.5_1_16:67864257-67867798:-|nuORF;ENSG00000102901|ENST00000562787|CENPT;ENST00000436104.6_1_16:67865250-67867798:-|nuORF	nc|ENSG00000102901|Q96BT3-2|CENPT	nc|ENSG00000102901|Q96BT3-2|CENPT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.250732421875	2	505.256705	1008.49886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.484	1	27.473	26.973	27.973	-0.01156								0	0	0	0.34227	1	4668	4668		18.146	3.3081	1				13150	1791	7375	7375	16771	16771					-0.00505188738986817
HLEPFFSYI	9	Unmodified	_HLEPFFSYI_					0	0	0		ENSG00000154227|ENST00000679737|CERS3	ENSG00000154227|ENST00000679737|CERS3	ENSG00000154227|ENST00000679737|CERS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3346557617188	2	576.78985	1151.56515	0.30626	0.00017665	0.79547	0.00045882	1.1017	0.00063546	576.7900929954424	70.062	0.41816	70.128	69.993	70.412	0.066048					21	14	2	0	0	0	0.2322	1	17740	17740		20.454	2.3073	1	142760			13151	5112	7376	7376	16772	16772					-0.004573728969262447
HLEPGLEHP	9	Unmodified	_HLEPGLEHP_					0	0	0			REV__nc|ENSG00000090372|Q9NRL3-2|STRN4	REV__nc|ENSG00000090372|Q9NRL3-2|STRN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2777099609375	2	514.761623	1027.50869	0.10827	5.5735E-05	0.29696	0.00015287	0.40524	0.0002086	514.7617890927462	19.002	0.56056	19.002	18.79	19.35	0					30	19	2	0	0	0	0.28128	1	2132	2132		11.64	0	1	57499	+		13152	22904	7377	7377	16773	16773					-0.003960007336218041
HLERLVDLI	9	Unmodified	_HLERLVDLI_					0	0	0			REV__ENSG00000135315|ENST00000403245|CEP162	REV__ENSG00000135315|ENST00000403245|CEP162	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3502197265625	2	554.329673	1106.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.966	1	97.959	97.459	98.459	-0.0068283								0	0	0	0.24715	1	26236	26236		7.2892	1.0834	1		+		13153	15731	7378	7378	16774	16774					0.09573693777042536
HLESDYCKHL	10	Unmodified	_HLESDYCKHL_					0	0	0		nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9;ENST00000482490.5_1_3:64536549-64672246:-|nuORF;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.215576171875	3	415.529129	1243.56556	-0.21022	-8.7351E-05	1.8964	0.00078802	1.6862	0.00070067	415.529936929192	22.566	0.28512	22.566	22.39	22.675	0					16	9	2	0	0	0	0.3198	1	3140	3140		0.77653	0	1	34914			13154	5713	7379	7379	16775	16775					-0.04648321239415054
HLFAVAYL	8	Unmodified	_HLFAVAYL_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.6084289550781	2	467.263271	932.511988	-0.024686	-1.1535E-05	-1.8752	-0.00087622	-1.8999	-0.00088775	467.26247204004636	92.146	0.12662	92.146	92.108	92.235	0					17	9	3	0	0	0	0.34147	1	24522	24522		6.3541	2.7576	1	75287	+		13155	13520	7380	7380	16776	16776					0.04303294111036848
HLFCFPFLGK	10	Unmodified	_HLFCFPFLGK_					0	0	0			REV__chr13:48577859-48590522|368|21.28|0.01|10.69|-|1|TE_info:THE1D,THE1D_dup9944,ERVL-MaLR,LTR,donor,-,48590522,48590785|LINC00462,None|5	REV__chr13:48577859-48590522|368|21.28|0.01|10.69|-|1|TE_info:THE1D,THE1D_dup9944,ERVL-MaLR,LTR,donor,-,48590522,48590785|LINC00462,None|5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.3197021484375	2	604.817887	1207.62122	0.24596	0.00014876	-1.3831	-0.00083655	-1.1372	-0.00068779	604.8169471670409	23.048	0.26978	23.048	22.875	23.145	0					14	8	2	0	0	0	0.39745	2	3342	3342;3350		3.9444	0.068064	1	47657	+		13156	13179	7381	7381	16777;16778	16777					0.025715567388488125
HLFCFPFLGK	10	Unmodified	_HLFCFPFLGK_					0	0	0			REV__chr13:48577859-48590522|368|21.28|0.01|10.69|-|1|TE_info:THE1D,THE1D_dup9944,ERVL-MaLR,LTR,donor,-,48590522,48590785|LINC00462,None|5	REV__chr13:48577859-48590522|368|21.28|0.01|10.69|-|1|TE_info:THE1D,THE1D_dup9944,ERVL-MaLR,LTR,donor,-,48590522,48590785|LINC00462,None|5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.8165893554688	2	604.817887	1207.62122	0.32329	0.00019553	-1.4058	-0.00085025	-1.0825	-0.00065472	604.816906646167	23.118	0.30519	23.031	22.937	23.242	-0.087608					15	10	2	0	0	0	0.39745	1	3372	3372		3.9444	0.66309	1	45938	+		13157	13179	7381	7381	16779	16779					0.025715567388488125
HLFCFPFLGK	10	Unmodified	_HLFCFPFLGK_					0	0	0			REV__chr13:48577859-48590522|368|21.28|0.01|10.69|-|1|TE_info:THE1D,THE1D_dup9944,ERVL-MaLR,LTR,donor,-,48590522,48590785|LINC00462,None|5	REV__chr13:48577859-48590522|368|21.28|0.01|10.69|-|1|TE_info:THE1D,THE1D_dup9944,ERVL-MaLR,LTR,donor,-,48590522,48590785|LINC00462,None|5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	604.817887	1207.62122	0.32329	0.00019553	-1.4058	-0.00085025	-1.0825	-0.00065472	604.816906646167	23.118	0.30519	23.031	22.937	23.242	-0.087608	-0.04681	1.5014E-05	NaN	3.9444	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45938	+		13158	13179	7381	7381							0.025715567388488125
HLFCFPFLGK	10	Unmodified	_HLFCFPFLGK_					0	0	0			REV__chr13:48577859-48590522|368|21.28|0.01|10.69|-|1|TE_info:THE1D,THE1D_dup9944,ERVL-MaLR,LTR,donor,-,48590522,48590785|LINC00462,None|5	REV__chr13:48577859-48590522|368|21.28|0.01|10.69|-|1|TE_info:THE1D,THE1D_dup9944,ERVL-MaLR,LTR,donor,-,48590522,48590785|LINC00462,None|5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	604.817887	1207.62122	0.28929	0.00017497	-1.4557	-0.00088043	-1.1664	-0.00070546	604.8171988178353	23.199	0.30018	23.154	22.977	23.277	-0.044867	0.075995	-4.5347E-05	NaN	3.9444	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65739	+		13159	13179	7381	7381							0.025715567388488125
HLFGVSHI	8	Unmodified	_HLFGVSHI_					0	0	0			REV__nc|ENSG00000146216|Q5TCY1-2|TTBK1	REV__nc|ENSG00000146216|Q5TCY1-2|TTBK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2491455078125	2	455.250695	908.486836	-0.044779	-2.0386E-05	-2.9124	-0.0013259	-2.9572	-0.0013463	455.2492535853258	15.109	0.79239	14.999	14.818	15.61	-0.10981					41	27	2	0	0	0	0.33916	1	968	968		26.341	6.9023	1	96739	+		13160	16334	7382	7382	16780	16780					0.028932393084687646
HLFGVSHI	8	Unmodified	_HLFGVSHI_					0	0	0			REV__nc|ENSG00000146216|Q5TCY1-2|TTBK1	REV__nc|ENSG00000146216|Q5TCY1-2|TTBK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2488708496094	2	455.250695	908.486836	-0.14352	-6.5339E-05	-3.2403	-0.0014751	-3.3838	-0.0015405	455.24927303591255	15.252	0.6809	15.188	14.955	15.636	-0.064414					35	22	3	0	0	0	0.39956	1	980	980		19.439	4.8573	1	114020	+		13161	16334	7382	7382	16781	16781					0.028932393084687646
HLFIRKSF	8	Unmodified	_HLFIRKSF_					0	0	0		nc|ENSG00000170325|Q9NQV6-2|PRDM10;nc|ENSG00000170325|Q9NQV6-1|PRDM10;nc|ENSG00000170325|Q9NQV6-5|PRDM10;nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10	nc|ENSG00000170325|Q9NQV6-2|PRDM10	nc|ENSG00000170325|Q9NQV6-2|PRDM10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.7921142578125	2	524.308544	1046.60253	0.53368	0.00027981	-0.18386	-9.64E-05	0.34982	0.00018341	524.3084089654437	40.901	0.41994	40.993	40.718	41.138	0.09267					27	15	2	0	0	0	0.34092	1	8796	8796		13.508	4.9146	1	284000			13162	6444	7383	7383	16782	16782					0.0810976315933658
HLFIRKSF	8	Unmodified	_HLFIRKSF_					0	0	0		nc|ENSG00000170325|Q9NQV6-2|PRDM10;nc|ENSG00000170325|Q9NQV6-1|PRDM10;nc|ENSG00000170325|Q9NQV6-5|PRDM10;nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10	nc|ENSG00000170325|Q9NQV6-2|PRDM10	nc|ENSG00000170325|Q9NQV6-2|PRDM10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	524.308544	1046.60253	0.28799	0.00015099	-0.24519	-0.00012856	0.042792	2.2436E-05	524.3082684093189	41.031	0.48364	41.031	40.796	41.28	0	0.018764	-4.3015E-05	NaN	13.508	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262730			13163	6444	7383	7383							0.0810976315933658
HLFLTPVR	8	Unmodified	_HLFLTPVR_					0	0	0		DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7951965332031	2	491.795269	981.575986	0.30866	0.0001518	0.23195	0.00011407	0.54062	0.00026587	491.79515505052404	41.697	1.5657	41.697	41.305	42.871	0					151	61	4	0	0	0	0.45169	1	9031	9031		5.2307	0	1	19845000			13164	260	7384	7384	16783	16783					0.08446074267999393
HLFNKTAK	8	Unmodified	_HLFNKTAK_					0	0	0			REV__CHM|p.M554Kfs*5|1|0.05|ENSG00000188419|chrX:85873161-85873162|-/GTAGTACCATT|frameshift_variant	REV__CHM|p.M554Kfs*5|1|0.05|ENSG00000188419|chrX:85873161-85873162|-/GTAGTACCATT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7907409667969	2	479.777077	957.5396	0.26724	0.00012821	-1.6629	-0.00079782	-1.3957	-0.00066961	479.7762456315468	19.494	0.72968	19.438	19.2	19.93	-0.055693					54	25	3	0	0	0	0.43302	1	2359	2359		11.64	0	1	94497	+		13165	13149	7385	7385	16784	16784					0.05913197371273782
HLFVTVQDF	9	Unmodified	_HLFVTVQDF_					0	0	0			REV__nc|ENSG00000125257|O15439-3|ABCC4	REV__nc|ENSG00000125257|O15439-3|ABCC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.830078125	2	553.287474	1104.5604	0.44489	0.00024615	0.12224	6.7634E-05	0.56713	0.00031379	553.2871852979004	79.41	0.53746	79.41	79.205	79.742	0					47	20	3	0	0	0	0.23784	1	20623	20623		19.257	8.4331	1	421610	+		13166	15257	7386	7386	16785	16785					0.01229742960299518
HLFVTVQDF	9	Unmodified	_HLFVTVQDF_					0	0	0			REV__nc|ENSG00000125257|O15439-3|ABCC4	REV__nc|ENSG00000125257|O15439-3|ABCC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.829833984375	2	553.287474	1104.5604	0.46395	0.0002567	0.064937	3.5929E-05	0.52889	0.00029263	553.2872011903155	79.376	0.7592	79.437	79.216	79.975	0.061417					62	30	3	0	0	0	0.21389	1	20625	20625		13.906	1.3745	1	364040	+		13167	15257	7386	7386	16786	16786					0.01229742960299518
HLFVTVQDF	9	Unmodified	_HLFVTVQDF_					0	0	0			REV__nc|ENSG00000125257|O15439-3|ABCC4	REV__nc|ENSG00000125257|O15439-3|ABCC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8298950195312	2	553.287474	1104.5604	0.45776	0.00025328	0.34103	0.00018869	0.7988	0.00044196	553.2873747095202	79.498	0.59372	79.469	79.182	79.776	-0.028931					51	23	3	0	0	0	0.23784	1	20610	20610		9.3831	0	1	413910	+		13168	15257	7386	7386	16787	16787					0.01229742960299518
HLFYSDVSS	9	Unmodified	_HLFYSDVSS_					0	0	0			REV__nc|ENSG00000178177|Q8N3X6|LCORL	REV__nc|ENSG00000178177|Q8N3X6|LCORL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.746337890625	2	527.745639	1053.47673	0.12189	6.4325E-05	1.887	0.00099583	2.0088	0.0010602	527.746842935133	13.655	0.72699	13.587	13.189	13.916	-0.067496					34	25	3	0	0	0	0.26145	1	492	492		2.0598	0.21551	1	131320	+		13169	23109	7387	7387	16788	16788					-0.04787413207418467
HLFYSDVSS	9	Unmodified	_HLFYSDVSS_					0	0	0			REV__nc|ENSG00000178177|Q8N3X6|LCORL	REV__nc|ENSG00000178177|Q8N3X6|LCORL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	527.745639	1053.47673	0.1759	9.2833E-05	2.1208	0.0011193	2.2967	0.0012121	527.7469423377562	13.562	0.54009	13.562	13.2	13.74	0	0.0045728	0.00018835	NaN	2.0598	30	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125650	+		13170	23109	7387	7387							-0.04787413207418467
HLFYSDVSS	9	Unmodified	_HLFYSDVSS_					0	0	0			REV__nc|ENSG00000178177|Q8N3X6|LCORL	REV__nc|ENSG00000178177|Q8N3X6|LCORL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	527.745639	1053.47673	0.066861	3.5285E-05	1.8395	0.00097079	1.9064	0.0010061	527.7466372592713	13.622	0.57946	13.523	13.189	13.768	-0.099291	-0.03434	-0.00010861	NaN	2.0598	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124660	+		13171	23109	7387	7387							-0.04787413207418467
HLGLCLWLWL	10	Unmodified	_HLGLCLWLWL_					0	0	0		ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1;ENST00000479501.5_1_20:61926459-61943880:+|nuORF;COL20A1|p.P87Qfs*26|1|0.17|ENSG00000101203|chr20:63305481-63305485|CCCCT/-|frameshift_variant	ENSG00000101203|ENST00000358894|COL20A1	ENSG00000101203|ENST00000358894|COL20A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.23724365234375	3	418.566967	1252.67907	0.56064	0.00023467	-2.197	-0.00091959	-1.6363	-0.00068492	418.5662057962531	47.461	0.26045	47.505	47.43	47.691	0.043324					11	9	2	0	0	0	0.31642	1	10759	10759		7.1017	0	1	74863			13172	1675	7388	7388	16789	16789					0.06283818664292085
HLGLPPDSLL	10	Unmodified	_HLGLPPDSLL_					0	0	0		nc|ENSG00000147113|Q9H7Y0-2|DIPK2B;ENSG00000147113|ENST00000398000|DIPK2B	nc|ENSG00000147113|Q9H7Y0-2|DIPK2B	nc|ENSG00000147113|Q9H7Y0-2|DIPK2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8170776367188	2	531.303124	1060.5917	0.077577	4.1217E-05	0.91016	0.00048357	0.98773	0.00052479	531.3035324244595	81.434	0.52994	81.503	81.293	81.823	0.068993					33	24	2	0	0	0	0.25875	1	21161	21161		19.257	2.3147	1	222980			13173	4745	7389	7389	16790	16790					0.06382315994369492
HLHGHQHARK	10	Unmodified	_HLHGHQHARK_					0	0	0		ENST00000519876.1_1_8:144351566-144355345:+|nuORF	ENST00000519876.1_1_8:144351566-144355345:+|nuORF	ENST00000519876.1_1_8:144351566-144355345:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.22625732421875	3	407.555112	1219.64351	-0.15243	-6.2124E-05	1.7965	0.00073219	1.6441	0.00067007	407.5558612393286	24.643	0.47766	24.612	24.203	24.681	-0.031408					27	16	2	0	0	0	0.31889	1	3820	3820		3.3196	3.3196	1	73175			13174	11466	7390	7390	16791	16791					0.042469172514984166
HLHIHVLG	8	Unmodified	_HLHIHVLG_					0	0	0		ENST00000474908.5_1_9:35813053-35813759:-|nuORF;ENSG00000137133|ENST00000259667|HINT2;ENST00000474848.6_1_9:35813053-35815141:-|nuORF	ENST00000474908.5_1_9:35813053-35813759:-|nuORF	ENST00000474908.5_1_9:35813053-35813759:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.2836608886719	2	463.271961	924.52937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.119	1	90.12	89.62	90.62	0.0003891								0	0	0	0.37595	1	23862	23862		2.8892	0.58649	1				13175	10928	7391	7391	16792	16792					0.06408634436695593
HLHSTWPPL	9	Unmodified	_HLHSTWPPL_					0	0	0			REV__ENST00000368194.7_1_1:156904966-156905101:-|nuORF	REV__ENST00000368194.7_1_1:156904966-156905101:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.287353515625	2	544.287808	1086.56106	0.76387	0.00041577	-0.17121	-9.3189E-05	0.59266	0.00032258	544.2877583149876	45.794	1.607	45.859	44.978	46.585	0.065048					136	58	3	0	0	0	0.19839	1	10104	10104		28.487	6.7402	1	6473400	+		13176	20331	7392	7392	16793	16793					0.021245824000061475
HLIIENFIP	9	Unmodified	_HLIIENFIP_					0	0	0		nc|ENSG00000101350|O15066-2|KIF3B;ENSG00000101350|ENST00000375712|KIF3B	nc|ENSG00000101350|O15066-2|KIF3B	nc|ENSG00000101350|O15066-2|KIF3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.331787109375	2	548.313492	1094.61243	0.53616	0.00029399	0.54849	0.00030074	1.0846	0.00059473	548.3138637003021	70.417	1.0831	70.478	70.127	71.21	0.060783					128	38	5	0	0	0	0.23775	1	18061	18061		18.135	2.2878	1	12890000			13177	1690	7393	7393	16794	16794					0.0689090637404206
HLIIENFIP	9	Unmodified	_HLIIENFIP_					0	0	0		nc|ENSG00000101350|O15066-2|KIF3B;ENSG00000101350|ENST00000375712|KIF3B	nc|ENSG00000101350|O15066-2|KIF3B	nc|ENSG00000101350|O15066-2|KIF3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.331787109375	2	548.313492	1094.61243	0.54805	0.0003005	0.49387	0.0002708	1.0419	0.0005713	548.3138376329566	70.504	1.1073	70.479	70.106	71.214	-0.024864					119	39	5	0	0	0	0.23775	1	18083	18083		18.135	2.2878	1	11962000			13178	1690	7393	7393	16795	16795					0.0689090637404206
HLIRKLYC	8	Unmodified	_HLIRKLYC_					0	0	0		ENSG00000120952|ENST00000240189|PRAMEF2	ENSG00000120952|ENST00000240189|PRAMEF2	ENSG00000120952|ENST00000240189|PRAMEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2584838867188	2	523.302404	1044.59026	0.14073	7.3644E-05	1.3344	0.00069828	1.4751	0.00077193	523.3030597322219	14.896	0.36603	14.831	14.589	14.955	-0.064413					22	12	2	0	0	0	0.34319	1	827	827		5.7604	1.0044	1	49476			13179	2978	7394	7394	16796	16796					0.06974403424624143
HLISNDPLS	9	Unmodified	_HLISNDPLS_					0	0	0			REV__nc|ENSG00000154556|O94875-7|SORBS2	REV__nc|ENSG00000154556|O94875-7|SORBS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.248291015625	2	498.261456	994.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.853	1	20.853	20.353	21.353	0								0	0	0	0.2489	1	2664	2664		6.7232	0	1		+		13180	16671	7395	7395	16797	16797					0.010885795465128467
HLKDFEEKI	9	Unmodified	_HLKDFEEKI_					0	0	0			REV__nc|ENSG00000123485|Q8NCD3-3|HJURP	REV__nc|ENSG00000123485|Q8NCD3-3|HJURP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.820556640625	2	579.811313	1157.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.024	1	51.071	50.571	51.571	0.046574								0	0	0	0.18053	1	11875	11875		27.629	1.3607	1		+		13181	15193	7396	7396	16798	16798					0.035573971604890176
HLKIVYRRF	9	Unmodified	_HLKIVYRRF_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF;ENST00000507642.5_1_5:40832592-40834660:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.57867431640625	3	411.252258	1230.73495	0.081788	3.3636E-05	-0.63035	-0.00025923	-0.54856	-0.0002256	411.2519666921542	29.896	0.89223	29.896	29.58	30.473	0					65	31	3	0	0	0	0.25612	1	5361	5361		8.1555	4.2792	1	120890			13182	4659	7397	7397	16799	16799					0.1288078789609699
HLKIVYRRF	9	Unmodified	_HLKIVYRRF_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF;ENST00000507642.5_1_5:40832592-40834660:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.57855224609375	3	411.252258	1230.73495	0.21673	8.9129E-05	-0.86213	-0.00035455	-0.6454	-0.00026542	411.2518876414081	29.842	0.69849	29.854	29.56	30.258	0.012266					53	23	3	0	0	0	0.25612	1	5372	5372		8.1555	4.2792	1	111220			13183	4659	7397	7397	16800	16800					0.1288078789609699
HLKIVYRRF	9	Unmodified	_HLKIVYRRF_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF;ENST00000507642.5_1_5:40832592-40834660:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5786437988281	3	411.252258	1230.73495	-0.13547	-5.5713E-05	-0.48548	-0.00019966	-0.62096	-0.00025537	411.25199140366817	29.873	0.84052	29.887	29.594	30.434	0.013474					64	28	3	0	0	0	0.25123	1	5360	5360		8.1555	2.7528	1	121140			13184	4659	7397	7397	16801	16801					0.1288078789609699
HLKRHLREKRF	11	Unmodified	_HLKRHLREKRF_					0	0	0		nc|ENSG00000130684|Q9Y3M9-2|ZNF337;ENSG00000130684|ENST00000252979|ZNF337	nc|ENSG00000130684|Q9Y3M9-2|ZNF337	nc|ENSG00000130684|Q9Y3M9-2|ZNF337	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7789001464844	3	507.307537	1518.90078	0.28973	0.00014698	4.135	0.0020977	4.4247	0.0022447	507.64433439717595	91.807	0.10315	91.898	91.861	91.964	0.090668					7	5	2	0	0	0	0.33347	1	24382	24382		0.45452	0.29519	1	138980			13185	3496	7398	7398	16802	16802					0.16208814404808436
HLKSLGLSF	9	Unmodified	_HLKSLGLSF_					0	0	0			REV__ENST00000461319.5_1_2:27425724-27426164:-|nuORF	REV__ENST00000461319.5_1_2:27425724-27426164:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.63446044921875	2	501.292559	1000.57057	0.49135	0.00024631	-2.0941	-0.0010497	-1.6027	-0.00080343	501.2898818451855	92.569	0.25146	92.57	92.462	92.714	0.00047302					20	14	2	0	0	0	0.24913	1	24619	24619		1.8442	0.19162	1	48058	+		13186	21217	7399	7399	16803	16803					0.07030350685533904
HLLEEEVEF	9	Unmodified	_HLLEEEVEF_					0	0	0		ENSG00000188647|ENST00000340434|PTAR1	ENSG00000188647|ENST00000340434|PTAR1	ENSG00000188647|ENST00000340434|PTAR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.809326171875	2	572.779679	1143.5448	0.56926	0.00032606	0.55721	0.00031916	1.1265	0.00064522	572.7804911715506	45.244	0.56561	45.313	44.979	45.545	0.068573					29	19	2	0	0	0	0.24739	1	10057	10057		8.5933	0	1	379440			13187	7764	7400	7400	16804	16804					-0.021225883474244256
HLLETPLVVK	10	Unmodified	_HLLETPLVVK_					0	0	0		AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000483900.1_1_1:247015289-247040365:-|nuORF	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.8556518554688	2	574.855524	1147.69649	0.33478	0.00019245	-0.06851	-3.9383E-05	0.26627	0.00015306	574.8553962142383	45.714	0.47776	45.774	45.565	46.043	0.059837					29	16	2	0	0	0	0.058058	1	10227	10227		57.249	41.402	1	285210			13188	22	7401	7401	16805	16805					0.12855437470943798
HLLETPLVVK	10	Unmodified	_HLLETPLVVK_					0	0	0		AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000483900.1_1_1:247015289-247040365:-|nuORF	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.77197265625	2	574.855524	1147.69649	0.43803	0.0002518	0.13071	7.514E-05	0.56874	0.00032694	574.8554389697559	45.748	0.55152	45.813	45.595	46.146	0.065048					29	19	2	0	0	0	0.22071	1	10243	10243		38.615	20.468	1	262540			13189	22	7401	7401	16806	16806					0.12855437470943798
HLLETPLVVK	10	Unmodified	_HLLETPLVVK_					0	0	0		AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000483900.1_1_1:247015289-247040365:-|nuORF	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	574.855524	1147.69649	0.57886	0.00033276	0.141	8.1052E-05	0.71986	0.00041381	574.8555177922735	45.71	0.52726	45.71	45.476	46.003	0	-0.056005	0.00011025	NaN	57.249	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328340			13190	22	7401	7401							0.12855437470943798
HLLHCLLSKSA	11	Unmodified	_HLLHCLLSKSA_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.Y1107Ifs*12|1|0.29|ENSG00000175054|chr3:142547763-142547763|A/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.3558349609375	2	611.342258	1220.66996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.869	1	84.869	84.369	85.369	0								0	0	0	0.34476	1	22266	22266		9.3831	0.63772	1				13191	6835	7402	7402	16807	16807					0.06845425307960795
HLLHVINML	9	Unmodified	_HLLHVINML_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47	ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3173828125	2	545.315512	1088.61647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.74	1	119.71	119.21	120.21	-0.024361								0	0	0	0.26258	1	30901	30901		2.3027	0.24298	1				13192	5932;12812	7403	7403	16808	16808					0.07570672596102668
HLLRLRAL	8	Unmodified	_HLLRLRAL_					0	0	0		nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7;ENST00000548269.1_1_12:53587490-53588125:-|nuORF	nc|ENSG00000139626|P26010-2|ITGB7	nc|ENSG00000139626|P26010-2|ITGB7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.9589538574219	2	496.329811	990.645068	0.47876	0.00023762	1.0647	0.00052844	1.5434	0.00076606	496.3307974200591	93.652	0.14861	93.651	93.569	93.718	-0.00051117					22	11	3	0	0	0	0.34185	1	24962	24962		10.183	0	1	56481			13193	4250	7404	7404	16809	16809					0.14937158287546026
HLLRLRAL	8	Unmodified	_HLLRLRAL_					0	0	0		nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7;ENST00000548269.1_1_12:53587490-53588125:-|nuORF	nc|ENSG00000139626|P26010-2|ITGB7	nc|ENSG00000139626|P26010-2|ITGB7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	496.329811	990.645068	0.27917	0.00013856	2.4941	0.0012379	2.7733	0.0013765	496.33077569178465	93.668	0.14495	93.668	93.633	93.778	0	0.0084708	0.00025078	NaN	10.183	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53817			13194	4250	7404	7404							0.14937158287546026
HLLVVSLFY	9	Unmodified	_HLLVVSLFY_					0	0	0		ENSG00000170790|ENST00000641461|OR10A2;ENSG00000170782|ENST00000379829|OR10A4;ENSG00000166363|ENST00000299454|OR10A5	ENSG00000170790|ENST00000641461|OR10A2	ENSG00000170790|ENST00000641461|OR10A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8178100585938	2	545.81841	1089.62227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.52	1	117.54	117.04	118.04	0.023476								0	0	0	0.26334	1	30456	30456		2.0598	0	1				13195	6068	7405	7405	16810	16810					0.08104094379427806
HLLYGKRDFLL	11	Unmodified	_HLLYGKRDFLL_					0	0	0		ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	ENST00000565539.5_1_16:57684180-57697491:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.9347229003906	3	458.934595	1373.78196	0.2663	0.00012221	0.16329	7.494E-05	0.42959	0.00019715	458.9344928935368	45.062	1.6164	45.062	44.605	46.222	0					192	58	4	0	0	0	0.39244	1	10288	10288		12.228	0	1	1386500			13196	8283	7406	7406	16811	16811					0.1100160265661998
HLNHTQAFLSC	11	Unmodified	_HLNHTQAFLSC_					0	0	0		nc|ENSG00000119535|Q99062-4|CSF3R;ENSG00000119535|ENST00000373106|CSF3R;nc|ENSG00000119535|Q99062-3|CSF3R;nc|ENSG00000119535|Q99062-2|CSF3R	nc|ENSG00000119535|Q99062-4|CSF3R	nc|ENSG00000119535|Q99062-4|CSF3R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8873291015625	3	424.204757	1269.59244	-0.12861	-5.4557E-05	-4.0652	-0.0017245	-4.1938	-0.001779	424.2032734512329	30.961	0.11626	30.961	30.862	30.979	0					5	3	2	0	0	0	0.3325	1	5733	5733		4.1166	2.3744	1	41124			13197	2884	7407	7407	16812	16812					-0.03157212628207162
HLNKIALLY	9	Unmodified	_HLNKIALLY_					0	0	0		ENST00000526594.1_1_11:102033229-102056975:+|nuORF	ENST00000526594.1_1_11:102033229-102056975:+|nuORF	ENST00000526594.1_1_11:102033229-102056975:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2359008789062	2	542.829309	1083.64407	0.64703	0.00035123	-2.0448	-0.00111	-1.3978	-0.00075874	542.8280872165778	66.073	1.8442	66.156	65.375	67.219	0.083832					109	66	2	0	0	0	0.24542	1	16626	16626		14.582	0	1	295970			13198	11557	7408	7408	16813	16813					0.10558899127977384
HLNRECSLF	9	Unmodified	_HLNRECSLF_					0	0	0		nc|ENSG00000173867|Q7L5Y6-2|DET1;ENSG00000140543|ENST00000268148|DET1;ENST00000557837.1_1_15:89060105-89074648:-|nuORF	nc|ENSG00000173867|Q7L5Y6-2|DET1	nc|ENSG00000173867|Q7L5Y6-2|DET1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.774658203125	2	559.774208	1117.53386	0.080254	4.4924E-05	0.68802	0.00038514	0.76828	0.00043006	559.7743923123218	81.092	1.0631	81.157	80.883	81.946	0.065094					143	51	5	0	0	0	0.12846	1	21071	21071		34.102	3.8776	1	1320400			13199	4316	7409	7409	16814	16814					-0.020202692027169178
HLPDFHRGIW	10	Unmodified	_HLPDFHRGIW_					0	0	0		ENST00000367218.7_1_1:203691783-203693034:+|nuORF	ENST00000367218.7_1_1:203691783-203693034:+|nuORF	ENST00000367218.7_1_1:203691783-203693034:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.8922119140625	3	426.556118	1276.64652	0.082741	3.5294E-05	-1.4774	-0.0006302	-1.3947	-0.00059491	426.55523697270485	21.108	0.45087	21.056	20.861	21.312	-0.05291					20	15	2	0	0	0	0.32082	1	2715	2715		3.3196	0	1	49435			13200	9730	7410	7410	16815	16815					0.019267475856622696
HLPLLLINRWF	11	Unmodified	_HLPLLLINRWF_					0	0	0			REV__nc|ENSG00000204397|Q5EG05|CARD16	REV__nc|ENSG00000204397|Q5EG05|CARD16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2911682128906	3	474.618718	1420.83433	0.12351	5.862E-05	-0.55271	-0.00026233	-0.4292	-0.00020371	474.6183695134116	69.474	0.48811	69.451	69.267	69.755	-0.022087					35	17	3	0	0	0	0.33346	1	17523	17523		0.50596	0	1	284800	+		13201	23168	7411	7411	16816	16816					0.14074185790218507
HLQAKKEEI	9	Unmodified	_HLQAKKEEI_					0	0	0		ENST00000433839.1_1_10:122892628-122892781:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000433839.1_1_10:122892628-122892781:-|nuORF	ENST00000433839.1_1_10:122892628-122892781:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.2450561523438	2	548.31148	1094.60841	0.34895	0.00019133	0.18458	0.00010121	0.53353	0.00029254	548.3115057728244	49.225	0.48028	49.257	49.014	49.494	0.032043					37	16	3	0	0	0	0.22596	1	11262	11262		21.747	3.6117	1	438420			13202	10484	7412	7412	16817	16817					0.06488816880346349
HLQKFRECF	9	Unmodified	_HLQKFRECF_					0	0	0		nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49	nc|ENSG00000164663|Q70CQ1-2|USP49	nc|ENSG00000164663|Q70CQ1-2|USP49	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.56085205078125	3	403.206209	1206.5968	-0.059274	-2.39E-05	2.7333	0.0011021	2.674	0.0010782	403.2074702805079	23.937	0.39763	23.898	23.737	24.135	-0.038927					21	13	2	0	0	0	0.26168	1	3554	3554		0.20686	0	1	33472			13203	5863	7413	7413	16818	16818					0.0017629658534588089
HLQLLDVSGNA	11	Unmodified	_HLQLLDVSGNA_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3775024414062	2	583.811845	1165.60914	0.28944	0.00016898	0.4914	0.00028688	0.78084	0.00045586	583.8118744051351	37.885	0.3021	37.983	37.82	38.122	0.097527					18	10	2	0	0	0	0.32855	1	7821	7821		7.1017	0	1	122230			13204	5677	7414	7414	16819	16819					0.0329561152941551
HLRLRLHA	8	Unmodified	_HLRLRLHA_					0	0	0			REV__ENST00000565696.1_1_16:27353421-27356207:+|nuORF	REV__ENST00000565696.1_1_16:27353421-27356207:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.773681640625	2	508.317235	1014.61992	0.20316	0.00010327	-1.4495	-0.00073678	-1.2463	-0.00063352	508.31638393598314	23.742	0.34672	23.67	23.588	23.935	-0.072559					16	11	2	0	0	0	0.34297	1	3532	3532		6.3541	6.3541	1	27927	+		13205	22150	7415	7415	16820	16820					0.11319103484981952
HLRLSPRRA	9	Unmodified	_HLRLSPRRA_					0	0	0			REV__ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant	REV__ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3383178710938	2	553.338698	1104.66284	0.38975	0.00021566	-0.53774	-0.00029755	-0.14798	-8.1885E-05	553.3380998887236	88.147	0.81601	88.144	87.852	88.668	-0.0028381					101	40	4	0	0	0	0.31038	1	23250	23250		7.2892	7.2892	1	857970	+		13206	17878	7416	7416	16821	16821					0.11469873542432651
HLRLSPRRA	9	Unmodified	_HLRLSPRRA_					0	0	0			REV__ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant	REV__ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.338698	1104.66284	0.49514	0.00027398	-0.75468	-0.00041759	-0.25954	-0.00014361	553.3380772065653	88.138	0.82787	88.138	87.844	88.672	0	-0.0051937	-9.1995E-05	NaN	7.2892	95	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	959770	+		13207	17878	7416	7416							0.11469873542432651
HLRLSPRRA	9	Unmodified	_HLRLSPRRA_					0	0	0			REV__ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant	REV__ZNF408|p.V555Gfs*146|1|0.24|ENSG00000175213|chr11:46705364-46705364|T/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.338698	1104.66284	0.43335	0.00023979	-0.68997	-0.00038179	-0.25662	-0.000142	553.3380634324053	88.058	0.8767	88.147	87.874	88.751	0.089195	0.0042956	-2.038E-05	NaN	7.2892	97	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	801360	+		13208	17878	7416	7416							0.11469873542432651
HLRQLSLF	8	Unmodified	_HLRQLSLF_					0	0	0			REV__ENST00000480290.5_1_7:127991288-127999229:-|nuORF	REV__ENST00000480290.5_1_7:127991288-127999229:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.3097839355469	2	507.298176	1012.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.433	1	94.431	93.931	94.931	-0.0020142								0	0	0	0.35251	1	25189	25189		13.508	4.9146	1		+		13209	21473	7417	7417	16822	16822					0.0760117277967538
HLRREHKI	8	Unmodified	_HLRREHKI_					0	0	0			REV__nc|ENSG00000240771|Q86VW2-2|ARHGEF25	REV__nc|ENSG00000240771|Q86VW2-2|ARHGEF25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.8250122070312	2	544.825424	1087.63629	0.66373	0.00036161	-0.7747	-0.00042208	-0.11097	-6.0462E-05	544.8246293733314	88.082	1.0041	88.171	87.766	88.77	0.089195					130	49	4	0	0	0	0.41097	1	23270	23270		18.135	1.1927	1	1029500	+		13210	19173	7418	7418	16823	16823					0.09598184651076735
HLRSFDFIHL	10	Unmodified	_HLRSFDFIHL_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L;TRMT1L|p.D373Y|1|0.31|ENSG00000121486|chr1:185139572-185139572|C/A|missense_variant	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.8995666503906	3	428.899773	1283.67749	0.024006	1.0296E-05	0.029383	1.2602E-05	0.053389	2.2898E-05	428.899597188593	63.204	1.109	63.3	62.88	63.989	0.095722					88	39	4	0	0	0	0.39612	1	15621	15621		4.1895	1.3462	1	646210			13211	2998	7419	7419	16824	16824					0.046999008999137004
HLRSFDFIHL	10	Unmodified	_HLRSFDFIHL_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L;TRMT1L|p.D373Y|1|0.31|ENSG00000121486|chr1:185139572-185139572|C/A|missense_variant	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.8995056152344	3	428.899773	1283.67749	0.025965	1.1136E-05	-0.10632	-4.5599E-05	-0.080352	-3.4463E-05	428.89952866939007	63.389	1.2395	63.381	62.938	64.178	-0.0085526					93	44	4	0	0	0	0.38027	1	15652	15652		7.1017	0.47135	1	662290			13212	2998	7419	7419	16825	16825					0.046999008999137004
HLSFVYPNDYT	11	Unmodified	_HLSFVYPNDYT_					0	0	0		ENSG00000139044|ENST00000266383|B4GALNT3	ENSG00000139044|ENST00000266383|B4GALNT3	ENSG00000139044|ENST00000266383|B4GALNT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2542419433594	3	452.547065	1354.61937	-0.14096	-6.3789E-05	-1.5634	-0.00070752	-1.7044	-0.00077131	452.54678973545174	14.207	0.36476	14.207	14.113	14.478	0					18	12	3	0	0	0	0.3322	1	690	690		4.7159	0	1	101140			13213	4205	7420	7420	16826	16826					-0.043758255360216936
HLSHTTHF	8	Unmodified	_HLSHTTHF_					0	0	0		nc|ENSG00000179029|Q6UX40-2|TMEM107	nc|ENSG00000179029|Q6UX40-2|TMEM107	nc|ENSG00000179029|Q6UX40-2|TMEM107	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.79791259765625	2	490.240858	978.467164	0.15226	7.4643E-05	0.0010798	5.2934E-07	0.15334	7.5172E-05	490.2408182565719	23.556	0.39106	23.556	23.308	23.699	0					21	13	2	0	0	0	0.33245	1	3497	3497		13.508	0	1	79883			13214	12862	7421	7421	16827	16827					-0.022931367022806626
HLSPLHASV	9	Unmodified	_HLSPLHASV_					0	0	0		MPP4|p.N441Kfs*2|1|0.06|ENSG00000082126|chr2:201654898-201654899|-/A|frameshift_variant;nc|ENSG00000082126|Q96JB8-2|MPP4;ENSG00000082126|ENST00000409474|MPP4;nc|ENSG00000082126|Q96JB8-5|MPP4;nc|ENSG00000082126|Q96JB8-4|MPP4	MPP4|p.N441Kfs*2|1|0.06|ENSG00000082126|chr2:201654898-201654899|-/A|frameshift_variant	MPP4|p.N441Kfs*2|1|0.06|ENSG00000082126|chr2:201654898-201654899|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7586364746094	2	480.766709	959.518865	0.35133	0.00016891	0.87816	0.00042219	1.2295	0.0005911	480.7669970172528	29.344	1.7006	29.344	28.333	30.034	0					145	60	4	0	0	0	0.28128	1	5411	5411		11.64	2.2572	1	1143700			13215	1192	7422	7422	16828	16828					0.03748606991609904
HLSPQPRF	8	Unmodified	_HLSPQPRF_					0	0	0			REV__ENST00000316292.13_1_6:74229958-74230393:-|nuORF	REV__ENST00000316292.13_1_6:74229958-74230393:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2670593261719	2	491.266876	980.519199	0.26144	0.00012844	-0.43818	-0.00021527	-0.17675	-8.683E-05	491.2667546413034	26.748	0.85489	26.748	26.44	27.294	0					75	29	3	0	0	0	0.32886	1	4431	4431		21.747	6.9084	1	292220	+		13216	19935	7423	7423	16829	16829					0.028160267114799353
HLSPQPRF	8	Unmodified	_HLSPQPRF_					0	0	0			REV__ENST00000316292.13_1_6:74229958-74230393:-|nuORF	REV__ENST00000316292.13_1_6:74229958-74230393:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.26708984375	2	491.266876	980.519199	0.46662	0.00022923	-1.2345	-0.00060646	-0.76787	-0.00037723	491.26664358749844	26.843	0.81933	26.831	26.42	27.239	-0.011562					88	28	5	0	0	0	0.31088	1	4439	4439		28.487	1.6032	1	323380	+		13217	19935	7423	7423	16830	16830					0.028160267114799353
HLSPSSHSK	9	Unmodified	_HLSPSSHSK_					0	0	0			REV__nc|ENSG00000125637|Q8NDX1-2|PSD4;REV__ENST00000464559.1_1_2:113956206-113958989:+|nuORF	REV__nc|ENSG00000125637|Q8NDX1-2|PSD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2670593261719	2	490.251423	978.488293	0.25204	0.00012356	-1.2022	-0.00058939	-0.95019	-0.00046583	490.2509546963259	26.838	0.62222	26.838	26.499	27.121	0					65	21	4	0	0	0	0.31038	1	4431	4431		7.2892	0.56607	1	292700	+		13218	15274;21265	7424	7424	16831	16831					-0.001811713934216641
HLSTFHPF	8	Unmodified	_HLSTFHPF_					0	0	0		ENST00000301788.11_1_11:62532685-62532837:+|nuORF	ENST00000301788.11_1_11:62532685-62532837:+|nuORF	ENST00000301788.11_1_11:62532685-62532837:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.27880859375	2	493.248152	984.481751	0.38173	0.00018829	0.82947	0.00040913	1.2112	0.00059742	493.2486131736124	31.852	0.60068	31.893	31.722	32.323	0.040991					35	20	2	0	0	0	0.29134	1	5985	5985		34.187	6.0141	1	335380			13219	9227	7425	7425	16832	16832					-0.01111064554152108
HLTALGYTLC	10	Unmodified	_HLTALGYTLC_					0	0	0		nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC	nc|ENSG00000290691|A6NGW2|STRCP1	nc|ENSG00000290691|A6NGW2|STRCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.2681274414062	2	546.281334	1090.54812	0.64555	0.00035265	0.28725	0.00015692	0.93281	0.00050957	546.2814595057891	31.776	1.4477	31.818	31.458	32.906	0.042364					104	51	3	0	0	0	0.30958	1	6067	6067		19.257	2.1441	1	3221200			13220	8554	7426	7426	16833	16833					0.00646383225603131
HLTDITLKV	9	Unmodified	_HLTDITLKV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2926635742188	2	520.310949	1038.60735	0.34368	0.00017882	-0.58289	-0.00030328	-0.23921	-0.00012446	520.3107924612484	46.18	0.24245	46.18	46.003	46.246	0					12	8	2	0	0	0	0.29176	1	10400	10400		10.074	1.3285	1	183840			13221	814	7427	7427	16834	16834					0.08958602511438585
HLTVVSLIFV	10	Unmodified	_HLTVVSLIFV_					0	0	0		nc|ENSG00000182652|Q8NH05|OR4Q3;ENSG00000182652|ENST00000642117|OR4Q3	nc|ENSG00000182652|Q8NH05|OR4Q3	nc|ENSG00000182652|Q8NH05|OR4Q3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3267822265625	2	564.344792	1126.67503	0.22982	0.0001297	-0.19944	-0.00011255	0.030384	1.7147E-05	564.3446955617075	67.153	0.45903	67.153	66.909	67.368	0					28	15	2	0	0	0	0.27059	1	16831	16831		24.021	1.2843	1	175180			13222	7307	7428	7428	16835	16835					0.116760524422034
HLTVVSLIFV	10	Unmodified	_HLTVVSLIFV_					0	0	0		nc|ENSG00000182652|Q8NH05|OR4Q3;ENSG00000182652|ENST00000642117|OR4Q3	nc|ENSG00000182652|Q8NH05|OR4Q3	nc|ENSG00000182652|Q8NH05|OR4Q3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3268432617188	2	564.344792	1126.67503	0.31868	0.00017984	-0.19817	-0.00011184	0.1205	6.8005E-05	564.3449635365248	66.996	0.51059	67.08	66.877	67.387	0.083832					30	17	2	0	0	0	0.27059	2	16788	16788;16845		24.021	10.115	1	148620			13223	7307	7428	7428	16836;16837	16836					0.116760524422034
HLTVVSLIFV	10	Unmodified	_HLTVVSLIFV_					0	0	0		nc|ENSG00000182652|Q8NH05|OR4Q3;ENSG00000182652|ENST00000642117|OR4Q3	nc|ENSG00000182652|Q8NH05|OR4Q3	nc|ENSG00000182652|Q8NH05|OR4Q3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.3267211914062	2	564.344792	1126.67503	0.076344	4.3085E-05	0.25473	0.00014376	0.33108	0.00018684	564.3449742940152	67.201	0.52995	67.185	66.893	67.423	-0.016296					28	17	2	0	0	0	0.27059	2	16826	16826;16872		24.021	4.7636	1	159120			13224	7307	7428	7428	16838;16839	16838					0.116760524422034
HLVFVIPK	8	Unmodified	_HLVFVIPK_					0	0	0			REV__ENSG00000168807|ENST00000336278|SNTB2	REV__ENSG00000168807|ENST00000336278|SNTB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.80181884765625	2	476.802563	951.590573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.173	1	12.173	11.673	12.673	0								0	0	0	0.38004	1	47	47		0.69038	0	1		+		13225	17479	7429	7429	16840	16840					0.11284146416141994
HLVHFPLKFLE	11	Unmodified	_HLVHFPLKFLE_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.6006164550781	3	460.599324	1378.77614	-0.040391	-1.8604E-05	1.3181	0.00060713	1.2777	0.00058853	460.60046517531293	27.125	2.8179	27.104	26.45	29.268	-0.02141					310	94	6	0	0	0	0.41892	1	4516	4516		8.7518	1.3227	1	6544400			13226	3416	7430	7430	16841	16841					0.10190504144952683
HLWGMKFLIR	10	Unmodified	_HLWGMKFLIR_					0	0	0			REV__ENST00000467566.1_1_2:109065689-109066146:+|nuORF	REV__ENST00000467566.1_1_2:109065689-109066146:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.78021240234375	3	434.249749	1299.72742	-0.31703	-0.00013767	4.4743	0.001943	4.1573	0.0018053	434.2518202589202	31.387	0.38263	31.387	31.171	31.553	0					24	13	3	0	0	0	0.32068	1	5832	5832		3.5871	2.1319	1	86222	+		13227	19889	7431	7431	16842	16842					0.089543123041949
HLWLHESARV	10	Unmodified	_HLWLHESARV_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9031677246094	3	416.55964	1246.65709	0.026959	1.123E-05	-2.7239	-0.0011347	-2.6969	-0.0011234	416.5584961501796	18.119	0.6635	18.002	17.694	18.358	-0.11739					46	22	4	0	0	0	0.31746	1	1793	1793		10.315	1.8709	1	214070			13228	2033	7432	7432	16843	16843					0.043627302400636836
HLWNVLLD	8	Unmodified	_HLWNVLLD_					0	0	0			REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.9747619628906	2	505.276909	1008.53927	-0.085132	-4.3015E-05	0.27498	0.00013894	0.18985	9.5926E-05	505.2768901330424	105.64	0.16531	105.64	105.53	105.7	0					38	23	2	0	0	0	0.34319	1	27958	27958		2.5775	0	1	66291	+		13229	20914	7433	7433	16844	16844					0.03533777651421133
HLYFGLLLWWR	11	Unmodified	_HLYFGLLLWWR_					0	0	0		ENST00000537247.5_1_12:100987507-100987675:+|nuORF	ENST00000537247.5_1_12:100987507-100987675:+|nuORF	ENST00000537247.5_1_12:100987507-100987675:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2806701660156	3	501.946835	1502.81868	0.67519	0.00033891	-2.1817	-0.0010951	-1.5065	-0.00075617	502.280527337455	37.276	2.2851	37.276	36.673	38.958	0					266	81	4	0	0	0	0.44966	2	7773	7773;7812		4.7159	0.59929	1	4444800			13230	11689	7434	7434	16845;16846	16845					0.08737899273182848
HLYGKVLEVVI	11	Unmodified	_HLYGKVLEVVI_					0	0	0			REV__nc|ENSG00000179915|Q9ULB1|NRXN1	REV__nc|ENSG00000179915|Q9ULB1|NRXN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	635.371337890625	2	635.381906	1268.74926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.392	1	99.385	98.885	99.885	-0.006897								0	0	0	0.38126	1	26622	26622		1.1933	0.23107	1		+		13231	18094	7435	7435	16847	16847					0.1256339553374346
HLYNHTSSEI	10	Unmodified	_HLYNHTSSEI_					0	0	0		nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.7854614257812	2	600.785827	1199.5571	0.4963	0.00029817	-0.79894	-0.00047999	-0.30264	-0.00018182	600.7854773413941	62.885	1.0725	62.885	62.341	63.413	0					47	25	3	0	0	0	0.16839	1	15585	15585		36.506	2.1045	1	638570			13232	408	7436	7436	16848	16848					-0.03469551884381872
HMIFPVVFF	9	Unmodified	_HMIFPVVFF_					0	0	0			REV__ENST00000259467.8_1_9:125582222-125582330:-|nuORF	REV__ENST00000259467.8_1_9:125582222-125582330:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.7882080078125	2	568.801706	1135.58886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.384	1	15.32	14.82	15.82	-0.064413								0	0	0	0.25352	1	1010	1010		5.2307	1.6342	1		+		13233	19573	7437	7437	16849	16849					0.026487693358603792
HMKWLLLDKWV	11	Unmodified	_HMKWLLLDKWV_					0	0	0			REV__ENSG00000110871|ENST00000288532|COQ5	REV__ENSG00000110871|ENST00000288532|COQ5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.7499084472656	3	490.275964	1467.80606	0.067343	3.3016E-05	-0.25909	-0.00012702	-0.19174	-9.4008E-05	490.60980356645416	14.784	0.39875	14.677	14.393	14.792	-0.107					24	13	4	0	0	0	0.3333	1	773	773		1.3296	0	1	58217	+		13234	14688	7438	7438	16850	16850					0.0908711981860506
HMKWLLLDKWV	11	Unmodified	_HMKWLLLDKWV_					0	0	0			REV__ENSG00000110871|ENST00000288532|COQ5	REV__ENSG00000110871|ENST00000288532|COQ5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	490.275964	1467.80606	0.014645	7.1799E-06	-1.1139	-0.00054612	-1.0993	-0.00053894	490.27539735883875	14.86	0.308	14.796	14.618	14.926	-0.064414	0.059162	-0.00044179	NaN	1.3296	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55799	+		13235	14688	7438	7438							0.0908711981860506
HMLGSWTS	8	Unmodified	_HMLGSWTS_					0	0	0			REV__ENST00000231461.9_1_5:100191873-100191942:-|nuORF	REV__ENST00000231461.9_1_5:100191873-100191942:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7105407714844	2	459.710545	917.406537	-0.18945	-8.709E-05	-0.41459	-0.00019059	-0.60404	-0.00027768	459.71056747034214	96.124	0.71046	96.124	95.868	96.578	0					135	68	3	0	0	0	0.45169	1	25690	25690		5.2307	2.3415	1	381310	+		13236	19465	7439	7439	16851	16851					-0.05546990076891234
HMLVIINV	8	Unmodified	_HMLVIINV_					0	0	0			REV__ENST00000504235.5_1_19:53926429-53926609:+|nuORF	REV__ENST00000504235.5_1_19:53926429-53926609:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.77862548828125	2	469.778231	937.541908	0.24521	0.00011519	1.213	0.00056983	1.4582	0.00068503	469.7786477026799	82.797	0.76381	82.797	82.534	83.298	0					64	28	3	0	0	0	0.45942	1	21612	21612		2.5775	2.5775	1	1006300	+		13237	21730	7440	7440	16852	16852					0.07063909784733369
HMLVIINV	8	Unmodified	_HMLVIINV_					0	0	0			REV__ENST00000504235.5_1_19:53926429-53926609:+|nuORF	REV__ENST00000504235.5_1_19:53926429-53926609:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	469.778231	937.541908	0.23416	0.00011	1.2234	0.00057471	1.4575	0.00068471	469.7786679100847	82.771	0.88277	82.844	82.517	83.4	0.07309	0.028415	0.00010782	NaN	2.5775	70	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	904080	+		13238	21730	7440	7440							0.07063909784733369
HMRALRQL	8	Unmodified	_HMRALRQL_					0	0	0			REV__nc|ENSG00000168827|Q96RP9-2|GFM1	REV__nc|ENSG00000168827|Q96RP9-2|GFM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.257568359375	2	512.795278	1023.576	-0.028481	-1.4605E-05	2.3588	0.0012096	2.3303	0.001195	512.7964742070568	39.305	0.45362	39.305	39.215	39.669	0					22	16	2	0	0	0	0.33245	1	8361	8361		19.439	5.9311	1	113390	+		13239	17483	7441	7441	16853	16853					0.06515750996334191
HNADQPLRV	9	Unmodified	_HNADQPLRV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2782592773438	2	525.277972	1048.54139	0.33705	0.00017705	0.16683	8.7633E-05	0.50389	0.00026468	525.2780504544564	22.464	1.32	22.464	22.16	23.48	0					126	45	4	0	0	0	5.4465E-12	2	3163	3113;3163		201.57	67.273	1	1427800			13240	7428	7442	7442	16854;16855	16855					0.019062063892533843
HNADQPLRV	9	Unmodified	_HNADQPLRV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2782592773438	2	525.277972	1048.54139	0.2971	0.00015606	0.25994	0.00013654	0.55704	0.0002926	525.2780893547348	22.625	1.1336	22.537	22.191	23.325	-0.08761					107	40	4	0	0	0	0.00010125	2	3195	3152;3195		140.63	58.104	1	1418600			13241	7428	7442	7442	16856;16857	16857					0.019062063892533843
HNADQPLRV	9	Unmodified	_HNADQPLRV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2783813476562	2	525.277972	1048.54139	0.33209	0.00017444	0.29861	0.00015686	0.63071	0.0003313	525.2780728373444	22.63	1.2602	22.585	22.124	23.385	-0.044867					102	44	4	0	0	0	3.0646E-11	3	3172	3128;3172;3217		193.29	66.728	1	1359700			13242	7428	7442	7442	16858;16859;16860	16859					0.019062063892533843
HNHSRSLIK	9	Unmodified	_HNHSRSLIK_					0	0	0		nc|ENSG00000148482|Q504Y0-2|SLC39A12;nc|ENSG00000148482|Q504Y0-3|SLC39A12;nc|ENSG00000148482|Q504Y0-4|SLC39A12;ENSG00000148482|ENST00000377369|SLC39A12	nc|ENSG00000148482|Q504Y0-2|SLC39A12	nc|ENSG00000148482|Q504Y0-2|SLC39A12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8057861328125	2	546.307064	1090.59957	0.60933	0.00033288	-1.2893	-0.00070437	-0.67999	-0.00037148	546.8061341233586	47.359	0.68887	47.411	47.088	47.777	0.052574					61	25	3	0	0	0	0.18208	1	10752	10752		26.268	0	1	1070600			13243	4815	7443	7443	16861	16861					0.05789888034496471
HNIKFHQLP	9	Unmodified	_HNIKFHQLP_					0	0	0		ENST00000546992.5_1_12:51445876-51446122:+|nuORF;ENST00000552430.5_1_12:51442859-51449674:+|nuORF;ENST00000547877.5_1_12:51442859-51453215:+|nuORF;nc|ENSG00000050426|Q6P1Q0-2|LETMD1;ENSG00000050426|ENST00000262055|LETMD1;nc|ENSG00000050426|Q6P1Q0-7|LETMD1	ENST00000546992.5_1_12:51445876-51446122:+|nuORF	ENST00000546992.5_1_12:51445876-51446122:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3273315429688	2	567.314358	1132.61416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.943	1	50.99	50.49	51.49	0.046574								0	0	0	0.21726	1	11850	11850		16.942	3.4344	1				13244	664	7444	7444	16862	16862					0.05315960182656454
HNIKFHQLP	9	Unmodified	_HNIKFHQLP_					0	0	0		ENST00000546992.5_1_12:51445876-51446122:+|nuORF;ENST00000552430.5_1_12:51442859-51449674:+|nuORF;ENST00000547877.5_1_12:51442859-51453215:+|nuORF;nc|ENSG00000050426|Q6P1Q0-2|LETMD1;ENSG00000050426|ENST00000262055|LETMD1;nc|ENSG00000050426|Q6P1Q0-7|LETMD1	ENST00000546992.5_1_12:51445876-51446122:+|nuORF	ENST00000546992.5_1_12:51445876-51446122:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3272705078125	2	567.314358	1132.61416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.013	1	51.022	50.522	51.522	0.0095634								0	0	0	0.21726	1	11864	11864		16.942	5.302	1				13245	664	7444	7444	16863	16863					0.05315960182656454
HNIPFSVVP	9	Unmodified	_HNIPFSVVP_					0	0	0		nc|ENSG00000136709|Q9C0J8-2|WDR33	nc|ENSG00000136709|Q9C0J8-2|WDR33	nc|ENSG00000136709|Q9C0J8-2|WDR33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.78436279296875	2	505.276909	1008.53927	0.35988	0.00018184	1.1582	0.00058522	1.5181	0.00076705	505.2775181292243	63.008	1.8457	62.999	62.118	63.963	-0.0085564					110	67	2	0	0	0	0.21905	1	15848	15848		23.148	0	1	325310			13246	12720	7445	7445	16864	16864					0.035337776514325014
HNKMHRKL	8	Unmodified	_HNKMHRKL_					0	0	0			REV__nc|ENSG00000147180|Q9Y462|ZNF711	REV__nc|ENSG00000147180|Q9Y462|ZNF711	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.29296875	2	532.300727	1062.5869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.86	1	30.888	30.388	31.388	0.027946								0	0	0	0.33122	1	5699	5699		23.148	1.6114	1		+		13247	16377	7446	7446	16865	16865					0.058111533706323826
HNLKASRQRR	10	Unmodified	_HNLKASRQRR_					0	0	0			REV__ENSG00000172935|ENST00000309099|MRGPRF	REV__ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3689575195312	2	633.368518	1264.72248	0.16085	0.00010188	0.74741	0.00047339	0.90826	0.00057526	633.368855753747	94.737	1.1468	94.737	94.247	95.394	0					172	104	2	0	0	0	0.41085	1	25284	25284		1.4819	1.4819	1	164490	+		13248	17748	7447	7447	16866	16866					0.1007114448577795
HNLKASRQRR	10	Unmodified	_HNLKASRQRR_					0	0	0			REV__ENSG00000172935|ENST00000309099|MRGPRF	REV__ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.36865234375	2	633.368518	1264.72248	0.10373	6.57E-05	0.41259	0.00026132	0.51632	0.00032702	633.3684517943366	95.986	1.3768	95.986	95.319	96.696	0					250	136	2	0	0	0	0.41085	3	25524	25524;25696;25841		1.4819	1.4819	1	165110	+		13249	17748	7447	7447	16867;16868;16869	16867					0.1007114448577795
HNLKASRQRR	10	Unmodified	_HNLKASRQRR_					0	0	0			REV__ENSG00000172935|ENST00000309099|MRGPRF	REV__ENSG00000172935|ENST00000309099|MRGPRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3682861328125	2	633.368518	1264.72248	0.10373	6.57E-05	0.41259	0.00026132	0.51632	0.00032702	633.3684517943366	95.986	1.3768	95.986	95.319	96.696	0					250	136	2	0	0	0	0.32132	1	25806	25806		1.4819	1.4819	1	165110	+		13250	17748	7447	7447	16870	16870					0.1007114448577795
HNLKASRQRR	10	Unmodified	_HNLKASRQRR_					0	0	0			REV__ENSG00000172935|ENST00000309099|MRGPRF	REV__ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.369140625	2	633.368518	1264.72248	0.54454	0.00034489	0.1656	0.00010489	0.71014	0.00044978	633.3685429155636	85.593	2.7697	85.677	83.932	86.702	0.084251					376	108	5	0	0	0	0.38773	1	22196	22196		5.7319	5.7319	1	7238600	+		13251	17748	7447	7447	16871	16871					0.1007114448577795
HNLKASRQRR	10	Unmodified	_HNLKASRQRR_					0	0	0			REV__ENSG00000172935|ENST00000309099|MRGPRF	REV__ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3699340820312	2	633.368518	1264.72248	0.2976	0.00018849	0.45988	0.00029128	0.75749	0.00047977	633.3685978355251	94.667	0.63647	94.749	94.382	95.019	0.082779					91	53	2	0	0	0	0.40262	2	25226	25226;25325		2.9952	0.49676	1	212350	+		13252	17748	7447	7447	16872;16873	16872					0.1007114448577795
HNLKASRQRR	10	Unmodified	_HNLKASRQRR_					0	0	0			REV__ENSG00000172935|ENST00000309099|MRGPRF	REV__ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3694458007812	2	633.368518	1264.72248	0.23586	0.00014939	0.43617	0.00027626	0.67203	0.00042564	633.3685120397519	96.314	1.2146	96.391	96.272	97.487	0.077415					167	119	2	0	0	0	0.40262	1	25719	25719		2.9952	0.49676	1	201270	+		13253	17748	7447	7447	16874	16874					0.1007114448577795
HNLKASRQRR	10	Unmodified	_HNLKASRQRR_					0	0	0			REV__ENSG00000172935|ENST00000309099|MRGPRF	REV__ENSG00000172935|ENST00000309099|MRGPRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.697265625	2	633.368518	1264.72248	0.23586	0.00014939	0.43617	0.00027626	0.67203	0.00042564	633.3685120397519	96.314	1.2146	96.391	96.272	97.487	0.077415					167	119	2	0	0	0	0.32072	1	25924	25924		2.9952	2.9952	1	201270	+		13254	17748	7447	7447	16875	16875					0.1007114448577795
HNLKASRQRR	10	Unmodified	_HNLKASRQRR_					0	0	0			REV__ENSG00000172935|ENST00000309099|MRGPRF	REV__ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3690795898438	2	633.368518	1264.72248	0.66806	0.00042313	-0.060172	-3.8111E-05	0.60788	0.00038501	633.3683827019042	85.744	1.5451	85.735	85.09	86.636	-0.0090027					257	58	5	0	0	0	0.38773	1	22422	22422		5.7319	5.7319	1	6345200	+		13255	17748	7447	7447	16876	16876					0.1007114448577795
HNLKASRQRR	10	Unmodified	_HNLKASRQRR_					0	0	0			REV__ENSG00000172935|ENST00000309099|MRGPRF	REV__ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3687133789062	2	633.368518	1264.72248	0.62776	0.0003976	0.79044	0.00050064	1.4182	0.00089824	633.3691499557219	92.002	1.6435	92.002	91.452	93.096	0.00046539					192	117	2	0	0	0	0.40262	1	24749	24749		2.9952	2.9952	1	272470	+		13256	17748	7447	7447	16877	16877					0.1007114448577795
HNLKASRQRR	10	Unmodified	_HNLKASRQRR_					0	0	0			REV__ENSG00000172935|ENST00000309099|MRGPRF	REV__ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3692016601562	2	633.368518	1264.72248	0.55417	0.00035099	0.23819	0.00015086	0.79236	0.00050185	633.3685264078376	94.881	0.79994	94.879	94.349	95.149	-0.0020142					98	69	2	0	0	0	0.38773	2	25271	25271;25319		5.7319	1.7875	1	173060	+		13257	17748	7447	7447	16878;16879	16878					0.1007114448577795
HNNRWKLLV	9	Unmodified	_HNNRWKLLV_					0	0	0		ENST00000198767.10_1_16:15154396-15154894:-|nuORF	ENST00000198767.10_1_16:15154396-15154894:-|nuORF	ENST00000198767.10_1_16:15154396-15154894:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.3649291992188	2	590.340907	1178.66726	0.3446	0.00020343	-0.4015	-0.00023702	-0.056904	-3.3592E-05	590.3407197512782	24.618	0.6288	24.562	24.344	24.972	-0.055931					44	21	3	0	0	0	0.34536	1	3784	3784		2.0598	0.21551	1	179560			13258	8796	7448	7448	16880	16880					0.0850733796530676
HNPETCQLF	9	Unmodified	_HNPETCQLF_					0	0	0		ENST00000484945.5_1_3:75472114-75480048:-|nuORF;ENST00000459803.5_1_3:75472114-75480048:-|nuORF;ENST00000491583.1_1_3:75475229-75475748:-|nuORF;ENST00000489609.5_1_3:75472285-75480052:-|nuORF;ENST00000478666.5_1_3:75472114-75480052:-|nuORF	ENST00000484945.5_1_3:75472114-75480048:-|nuORF	ENST00000484945.5_1_3:75472114-75480048:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2957153320312	2	544.745116	1087.47568	0.63684	0.00034692	0.37463	0.00020408	1.0115	0.00055099	544.745346469411	87.384	0.37032	87.384	87.093	87.463	0					19	16	2	0	0	0	0.24913	1	22952	22952		12.532	2.3482	1	68902			13259	10716	7449	7449	16881	16881					-0.06455950847998793
HNRISHLPSGF	11	Unmodified	_HNRISHLPSGF_					0	0	0		TLR8|p.T750Rfs*47|1|0.05|ENSG00000101916|chrX:12921288-12921289|-/GAGTAGTTTGTTTC|frameshift_variant;ENSG00000101916|ENST00000218032|TLR8;nc|ENSG00000101916|Q9NR97-2|TLR8	TLR8|p.T750Rfs*47|1|0.05|ENSG00000101916|chrX:12921288-12921289|-/GAGTAGTTTGTTTC|frameshift_variant	TLR8|p.T750Rfs*47|1|0.05|ENSG00000101916|chrX:12921288-12921289|-/GAGTAGTTTGTTTC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2231140136719	3	422.223028	1263.64725	0.058762	2.4811E-05	0.27485	0.00011605	0.33361	0.00014086	422.2231514078592	32.313	0.94044	32.367	32.045	32.985	0.054371					103	33	4	0	0	0	0.32495	1	6165	6165		17.863	17.863	1	1433000			13260	1729	7450	7450	16882	16882					0.025975422346846244
HNRPVGKREPG	11	Unmodified	_HNRPVGKREPG_					0	0	0		ENST00000335325.8_1_16:75143367-75143451:+|nuORF	ENST00000335325.8_1_16:75143367-75143451:+|nuORF	ENST00000335325.8_1_16:75143367-75143451:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.91436767578125	3	416.230294	1245.66905	0.056696	2.3599E-05	2.3229	0.00096686	2.3796	0.00099046	416.2321217617142	16.065	0.65949	16.003	15.638	16.298	-0.062534					65	22	4	0	0	0	0.41288	1	1277	1277		7.846	5.4113	1	292160			13261	9479	7451	7451	16883	16883					0.0560434698327299
HNRSRSRQKDR	11	Unmodified	_HNRSRSRQKDR_					0	0	0		nc|ENSG00000153914|Q8WXA9|SREK1;ENSG00000153914|ENST00000334121|SREK1	nc|ENSG00000153914|Q8WXA9|SREK1	nc|ENSG00000153914|Q8WXA9|SREK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7502136230469	3	480.594406	1438.76139	0.063309	3.0426E-05	0.3892	0.00018705	0.45251	0.00021747	480.92881082182373	22.359	0.632	22.359	22.017	22.649	0					35	21	2	0	0	0	0.33189	1	3067	3067		5.8681	3.0249	1	95669			13262	5092	7452	7452	16884	16884					0.059558250494774256
HNSLLSLRF	9	Unmodified	_HNSLLSLRF_					0	0	0			REV__ENSG00000198844|ENST00000361926|ARHGEF15	REV__ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3027954101562	2	543.806365	1085.59818	0.70365	0.00038265	-3.5137	-0.0019108	-2.8101	-0.0015281	543.8040671317214	75.55	0.29469	75.518	75.342	75.637	-0.031479					15	10	2	0	0	0	0.21389	1	19408	19408		25.399	4.9457	1	267520	+		13263	18876	7453	7453	16885	16885					0.05880253945747427
HNSNIIKKL	9	Unmodified	_HNSNIIKKL_					0	0	0		nc|ENSG00000144747|P82094-2|TMF1;ENSG00000144747|ENST00000398559|TMF1;TMF1|p.V597Lfs*4|1|0.44|ENSG00000144747|chr3:69039590-69039590|T/-|frameshift_variant	nc|ENSG00000144747|P82094-2|TMF1	nc|ENSG00000144747|P82094-2|TMF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.8221435546875	2	533.822015	1065.62948	0.36539	0.00019505	0.15767	8.4168E-05	0.52306	0.00027922	533.8220633120226	19.615	0.50349	19.615	19.401	19.905	0					29	17	2	0	0	0	0.2869	1	2338	2338		10.8	0	1	58822			13264	4611	7454	7454	16886	16886					0.09928826979853511
HNSNIIKKL	9	Unmodified	_HNSNIIKKL_					0	0	0		nc|ENSG00000144747|P82094-2|TMF1;ENSG00000144747|ENST00000398559|TMF1;TMF1|p.V597Lfs*4|1|0.44|ENSG00000144747|chr3:69039590-69039590|T/-|frameshift_variant	nc|ENSG00000144747|P82094-2|TMF1	nc|ENSG00000144747|P82094-2|TMF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	533.822015	1065.62948	0.57834	0.00030873	-0.053705	-2.8669E-05	0.52464	0.00028006	533.821884132221	19.765	0.49319	19.709	19.485	19.978	-0.055693	0.039487	-0.00024479	NaN	10.8	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66270			13265	4611	7454	7454							0.09928826979853511
HNTTTFYYTF	10	Unmodified	_HNTTTFYYTF_					0	0	0			REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant	REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.7907104492188	2	647.790578	1293.5666	0.59528	0.00038562	0.0050115	3.2464E-06	0.60029	0.00038886	647.7904973996544	88.427	0.5769	88.427	88.22	88.797	0					62	29	3	0	0	0	0.31867	3	23378	23335;23378;23446		18.146	1.9972	1	185020	+		13266	23319	7455	7455	16887;16888;16889	16888					-0.06843783598856135
HNTTTFYYTF	10	Unmodified	_HNTTTFYYTF_					0	0	0			REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant	REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.7908325195312	2	647.790578	1293.5666	0.44246	0.00028662	-0.21889	-0.0001418	0.22357	0.00014483	647.7903755719549	88.329	0.556	88.418	88.144	88.7	0.089195					57	24	3	0	0	0	0.31867	2	23294	23294;23341		18.146	1.9972	1	254070	+		13267	23319	7455	7455	16890;16891	16890					-0.06843783598856135
HNTTTFYYTF	10	Unmodified	_HNTTTFYYTF_					0	0	0			REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant	REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.7908325195312	2	647.790578	1293.5666	0.4037	0.00026151	0.23711	0.0001536	0.64081	0.00041511	647.790531138193	88.423	0.59109	88.42	88.208	88.799	-0.0028381					66	26	3	0	0	0	0.27059	3	23361	23320;23361;23414		24.021	2.4836	1	420820	+		13268	23319	7455	7455	16892;16893;16894	16893					-0.06843783598856135
HNTTTFYYTF	10	Unmodified	_HNTTTFYYTF_					0	0	0			REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant	REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	647.790578	1293.5666	0.44246	0.00028662	-0.21889	-0.0001418	0.22357	0.00014483	647.7903755719549	88.329	0.556	88.418	88.144	88.7	0.089195	-0.0040643	-0.00032822	NaN	24.021	57	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254070	+		13269	23319	7455	7455							-0.06843783598856135
HNTTTFYYTF	10	Unmodified	_HNTTTFYYTF_					0	0	0			REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant	REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	647.790578	1293.5666	0.4037	0.00026151	0.23711	0.0001536	0.64081	0.00041511	647.790531138193	88.423	0.59109	88.42	88.208	88.799	-0.0028381	-0.0013922	0.00026257	NaN	24.021	66	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420820	+		13270	23319	7455	7455							-0.06843783598856135
HNVKKRRE	8	Unmodified	_HNVKKRRE_					0	0	0			REV__ENST00000489108.1_1_1:22084083-22109432:-|nuORF	REV__ENST00000489108.1_1_1:22084083-22109432:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2528686523438	2	533.815056	1065.61556	1.1129	0.00059408	1.9722	0.0010528	3.0851	0.0016469	533.8160298349407	47.24	0.43519	47.295	47.006	47.442	0.054371					21	15	2	0	0	0	0.34218	1	10703	10703		9.3474	1.4373	1	228810	+		13271	21584	7456	7456	16895	16895					0.08537594271410853
HPADNRTQI	9	Unmodified	_HPADNRTQI_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant;UTRN|p.I1307Nfs*3|1|0.28|ENSG00000152818|chr6:144487642-144487643|-/A|frameshift_variant	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3165283203125	2	526.267604	1050.52066	0.2189	0.0001152	0.10206	5.3709E-05	0.32096	0.00016891	526.2676641483658	15.017	0.44517	15.017	14.873	15.319	0					24	15	2	0	0	0	0.25346	1	927	927		10.8	5.0677	1	55219			13272	5043	7457	7457	16896	16896					-0.002583839904218621
HPADNRTQI	9	Unmodified	_HPADNRTQI_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant;UTRN|p.I1307Nfs*3|1|0.28|ENSG00000152818|chr6:144487642-144487643|-/A|frameshift_variant	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3162841796875	2	526.267604	1050.52066	0.24266	0.00012771	0.10376	5.4604E-05	0.34642	0.00018231	526.2674497573313	15.2	0.53059	15.09	14.905	15.436	-0.10981					28	18	2	0	0	0	0.25346	1	969	969		10.8	2.644	1	95259			13273	5043	7457	7457	16897	16897					-0.002583839904218621
HPAGPRTVF	9	Unmodified	_HPAGPRTVF_					0	0	0		ENSG00000143158|ENST00000271373|MPC2	ENSG00000143158|ENST00000271373|MPC2	ENSG00000143158|ENST00000271373|MPC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.26690673828125	2	491.266876	980.519199	0.29406	0.00014446	-0.27482	-0.00013501	0.019236	9.45E-06	491.2667410807166	26.778	0.82787	26.756	26.388	27.215	-0.021412					69	28	3	0	0	0	0.21538	1	4445	4445		15.248	0	1	302970			13274	4484	7458	7458	16898	16898					0.028160267114685666
HPAILRSQARL	11	Unmodified	_HPAILRSQARL_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.5902099609375	3	421.254439	1260.74149	-0.37535	-0.00015812	-0.58729	-0.0002474	-0.96264	-0.00040551	421.25411468781465	28.232	0.35311	28.232	28.065	28.418	0					19	11	2	0	0	0	0.3322	1	4889	4889		2.6312	0	1	102190			13275	2525	7459	7459	16899	16899					0.12154681056836125
HPAILRSQARL	11	Unmodified	_HPAILRSQARL_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.59014892578125	3	421.254439	1260.74149	-0.27725	-0.00011679	-0.51106	-0.00021529	-0.78831	-0.00033208	421.25418521466565	28.311	0.44647	28.312	28.078	28.524	0.00046921					27	15	2	0	0	0	0.33277	1	4881	4881		3.0723	1.8789	1	99043			13276	2525	7459	7459	16900	16900					0.12154681056836125
HPAVYSLGLL	10	Unmodified	_HPAVYSLGLL_					0	0	0			REV__ENSG00000138111|ENST00000238936|MFSD13A	REV__ENSG00000138111|ENST00000238936|MFSD13A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7776489257812	2	535.305667	1068.59678	0.34709	0.0001858	1.1133	0.00059593	1.4604	0.00078174	535.305477961051	57.231	0.40809	57.214	57.035	57.443	-0.0172					19	14	2	0	0	0	0.31267	1	13793	13793		14.838	0.93222	1	257990	+		13277	15904	7460	7460	16901	16901					0.06522619856991696
HPCYRCRQF	9	Unmodified	_HPCYRCRQF_					0	0	0			REV__ENST00000445946.3_1_10:89620650-89620791:-|nuORF	REV__ENST00000445946.3_1_10:89620650-89620791:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.8511657714844	3	403.85166	1208.53315	-0.50468	-0.00020382	-0.77169	-0.00031165	-1.2764	-0.00051546	403.8513504553395	13.105	0.43657	13.006	12.869	13.306	-0.099291					26	14	2	0	0	0	0.34085	1	329	329		2.7352	0.99292	1	46434	+		13278	21077	7461	7461	16902	16902					-0.06277387123418521
HPCYRCRQF	9	Unmodified	_HPCYRCRQF_					0	0	0			REV__ENST00000445946.3_1_10:89620650-89620791:-|nuORF	REV__ENST00000445946.3_1_10:89620650-89620791:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	403.85166	1208.53315	-0.50468	-0.00020382	-0.77169	-0.00031165	-1.2764	-0.00051546	403.8513504553395	13.105	0.43657	13.006	12.869	13.306	-0.099291	-0.0056246	0.00023829	NaN	2.7352	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46434	+		13279	21077	7461	7461							-0.06277387123418521
HPCYRCRQF	9	Unmodified	_HPCYRCRQF_					0	0	0			REV__ENST00000445946.3_1_10:89620650-89620791:-|nuORF	REV__ENST00000445946.3_1_10:89620650-89620791:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	403.85166	1208.53315	-0.53208	-0.00021488	-0.83772	-0.00033831	-1.3698	-0.0005532	403.85129767053786	13.072	0.33759	13.005	12.878	13.215	-0.067496	-0.0066817	0.00015829	NaN	2.7352	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60761	+		13280	21077	7461	7461							-0.06277387123418521
HPDLIISCSII	11	Unmodified	_HPDLIISCSII_					0	0	0		ENST00000354772.8_3_14:23815551-23815695:-|nuORF	ENST00000354772.8_3_14:23815551-23815695:-|nuORF	ENST00000354772.8_3_14:23815551-23815695:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2221374511719	3	404.221525	1209.64274	-0.037244	-1.5055E-05	0.73485	0.00029704	0.69761	0.00028199	404.22185397540244	20.221	0.96284	20.105	19.612	20.575	-0.11592					76	34	4	0	0	0	0.4112	1	2500	2500		9.7643	2.1553	1	176190			13281	9600	7462	7462	16903	16903					0.046308969769143005
HPDSHQLFI	9	Unmodified	_HPDSHQLFI_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136268294-136268516:-|nuORF	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.2750244140625	2	547.274898	1092.53524	0.10232	5.5998E-05	0.27116	0.0001484	0.37348	0.00020439	547.2749532847886	38.68	2.4847	38.68	38.177	40.662	0					241	89	5	0	0	0	0.00012108	4	8067	8067;8111;8161;8215		137.42	89.675	1	7427700			13282	4679	7463	7463	16904;16905;16906;16907	16904					-0.007323118423073538
HPDSHQLFI	9	Unmodified	_HPDSHQLFI_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136268294-136268516:-|nuORF	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.275146484375	2	547.274898	1092.53524	0.53293	0.00029166	-0.15643	-8.5609E-05	0.3765	0.00020605	547.2747072867187	38.618	2.1044	38.709	38.237	40.341	0.090881					220	75	5	0	0	0	0.00012108	4	8072	8072;8120;8163;8326		137.42	89.675	1	7966400			13283	4679	7463	7463	16908;16909;16910;16911	16908					-0.007323118423073538
HPDSHQLFI	9	Unmodified	_HPDSHQLFI_					0	0	0		ENSG00000145907|ENST00000356245|G3BP1;ENST00000413279.1_1_2:136268294-136268516:-|nuORF	ENSG00000145907|ENST00000356245|G3BP1	ENSG00000145907|ENST00000356245|G3BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.2749633789062	2	547.274898	1092.53524	0.6461	0.00035359	-0.24699	-0.00013517	0.39911	0.00021842	547.2746723152072	38.603	2.2196	38.701	38.176	40.395	0.097527					227	79	5	0	0	0	0.00012108	5	8021	8021;8064;8113;8158;8263		137.42	89.675	1	8054000			13284	4679	7463	7463	16912;16913;16914;16915;16916	16912					-0.007323118423073538
HPEAINVYQEA	11	Unmodified	_HPEAINVYQEA_					0	0	0		nc|ENSG00000003137|Q9NR63-2|CYP26B1;nc|ENSG00000003137|Q9NR63-3|CYP26B1;ENSG00000003137|ENST00000001146|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	635.80712890625	2	635.806759	1269.59897	0.20841	0.00013251	0.051582	3.2796E-05	0.25999	0.0001653	635.8068199931708	23.918	0.52438	23.918	23.669	24.194	0					38	17	3	0	0	0	0.44351	1	3603	3603		10.151	5.2536	1	153550			13285	301	7464	7464	16917	16917					-0.025049961958757194
HPEAINVYQEA	11	Unmodified	_HPEAINVYQEA_					0	0	0		nc|ENSG00000003137|Q9NR63-2|CYP26B1;nc|ENSG00000003137|Q9NR63-3|CYP26B1;ENSG00000003137|ENST00000001146|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	635.8065185546875	2	635.806759	1269.59897	0.58568	0.00037238	-0.54606	-0.00034719	0.039619	2.519E-05	635.8065810778374	24.133	0.51622	24.094	23.82	24.336	-0.038927					41	17	3	0	0	0	0.44351	2	3635	3635;3689		10.151	5.2536	1	125690			13286	301	7464	7464	16918;16919	16918					-0.025049961958757194
HPEAINVYQEA	11	Unmodified	_HPEAINVYQEA_					0	0	0		nc|ENSG00000003137|Q9NR63-2|CYP26B1;nc|ENSG00000003137|Q9NR63-3|CYP26B1;ENSG00000003137|ENST00000001146|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	635.806759	1269.59897	0.49182	0.0003127	-0.23235	-0.00014773	0.25946	0.00016497	635.8065840968982	24.121	0.63088	24.048	23.756	24.387	-0.072559	0.028002	-3.1314E-05	NaN	10.151	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138530			13287	301	7464	7464							-0.025049961958757194
HPEAINVYQEA	11	Unmodified	_HPEAINVYQEA_					0	0	0		nc|ENSG00000003137|Q9NR63-2|CYP26B1;nc|ENSG00000003137|Q9NR63-3|CYP26B1;ENSG00000003137|ENST00000001146|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	635.806759	1269.59897	0.58568	0.00037238	-0.54606	-0.00034719	0.039619	2.519E-05	635.8065810778374	24.133	0.51622	24.094	23.82	24.336	-0.038927	0.074184	-0.00043022	NaN	10.151	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125690			13288	301	7464	7464							-0.025049961958757194
HPEVLNIR	8	Unmodified	_HPEVLNIR_					0	0	0		nc|ENSG00000148848|O43184-3|ADAM12;nc|ENSG00000148848|O43184-4|ADAM12;nc|ENSG00000148848|O43184-2|ADAM12;ENSG00000148848|ENST00000448723|ADAM12;nc|ENSG00000148848|O43184|ADAM12	nc|ENSG00000148848|O43184-3|ADAM12	nc|ENSG00000148848|O43184-3|ADAM12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7871398925781	2	489.279983	976.545414	0.16173	7.9129E-05	-0.25414	-0.00012434	-0.092413	-4.5216E-05	489.2798508975484	25.06	0.40638	25.004	24.78	25.186	-0.055931					16	14	2	0	0	0	0.34294	1	3925	3925		7.2892	0.56607	1	56028			13289	4834	7465	7465	16920	16920					0.05620295882931714
HPFAPWPR	8	Unmodified	_HPFAPWPR_					0	0	0			REV__ENST00000176183.5_1_11:639911-640686:+|nuORF	REV__ENST00000176183.5_1_11:639911-640686:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.79766845703125	2	504.264136	1006.51372	0.28689	0.00014467	-1.6803	-0.00084731	-1.3934	-0.00070264	504.2632746506654	67.136	0.54094	67.136	66.909	67.45	0					30	18	3	0	0	0	0.33618	1	16919	16919		17.087	0.14425	1	150730	+		13290	19389	7466	7466	16921	16921					0.010723479196485641
HPFCCSSCETG	11	Unmodified	_HPFCCSSCETG_					0	0	0		ENST00000227524.8_1_11:60658278-60658554:-|nuORF	ENST00000227524.8_1_11:60658278-60658554:-|nuORF	ENST00000227524.8_1_11:60658278-60658554:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.287109375	2	585.704276	1169.394	0.1544	9.0434E-05	1.1243	0.00065848	1.2787	0.00074891	585.7053309065604	26.473	0.48557	26.434	26.178	26.664	-0.038671					41	16	3	0	0	0	0.33238	1	4333	4333		3.2813	1.2216	1	163120			13291	8850	7467	7467	16922	16922					-0.18392137593764346
HPFFGRVVL	9	Unmodified	_HPFFGRVVL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.271728515625	2	536.308544	1070.60253	0.44378	0.000238	-1.4146	-0.00075864	-0.97078	-0.00052064	536.3074664807381	51.624	0.72137	51.633	51.297	52.018	0.0095634					35	26	2	0	0	0	0.25202	1	12073	12073		10.824	2.0785	1	308660			13292	2724	7468	7468	16923	16923					0.07005763159327216
HPFPGPGLAI	10	Unmodified	_HPFPGPGLAI_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.7533874511719	2	503.279452	1004.54435	0.34526	0.00017376	-0.25016	-0.0001259	0.095094	4.7859E-05	503.2791665190207	57.833	0.97048	57.816	57.471	58.442	-0.0172					77	35	3	0	0	0	0.25344	1	13917	13917		32.117	17.535	1	673700			13293	5716	7469	7469	16924	16924					0.0422608151403665
HPFPGPGLAI	10	Unmodified	_HPFPGPGLAI_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	503.279452	1004.54435	0.3499	0.0001761	-0.69699	-0.00035078	-0.34709	-0.00017468	503.27938488174715	57.657	0.89646	57.742	57.491	58.387	0.085617	-0.066704	-0.00017371	NaN	24.674	93	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	648760			13294	5716	7469	7469							0.0422608151403665
HPFRTKKI	8	Unmodified	_HPFRTKKI_					0	0	0			REV__ENST00000551051.5_1_12:113546023-113565713:-|nuORF	REV__ENST00000551051.5_1_12:113546023-113565713:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7869262695312	2	513.813993	1025.61343	0.035013	1.799E-05	0.10082	5.1804E-05	0.13584	6.9794E-05	513.8135122439093	15.245	0.41653	15.135	14.93	15.347	-0.10981					27	14	3	0	0	0	0.34294	1	1012	1012		7.2892	0	1	53127	+		13295	14719	7470	7470	16925	16925					0.10165165533612708
HPFRTKKI	8	Unmodified	_HPFRTKKI_					0	0	0			REV__ENST00000551051.5_1_12:113546023-113565713:-|nuORF	REV__ENST00000551051.5_1_12:113546023-113565713:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.813993	1025.61343	0.031573	1.6223E-05	-0.16149	-8.2975E-05	-0.12991	-6.6752E-05	513.8134582105888	15.111	0.46381	15.111	14.949	15.413	0	-0.041118	-0.00016303	NaN	7.2892	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79042	+		13296	14719	7470	7470							0.10165165533612708
HPFRTKKI	8	Unmodified	_HPFRTKKI_					0	0	0			REV__ENST00000551051.5_1_12:113546023-113565713:-|nuORF	REV__ENST00000551051.5_1_12:113546023-113565713:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	513.813993	1025.61343	-0.081109	-4.1675E-05	0.19355	9.9449E-05	0.11244	5.7774E-05	513.8134457189235	15.274	0.41096	15.21	15.013	15.424	-0.064414	0.058102	0.00020182	NaN	7.2892	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89611	+		13297	14719	7470	7470							0.10165165533612708
HPFVLQSV	8	Unmodified	_HPFVLQSV_					0	0	0		ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2768249511719	2	463.758352	925.502152	-0.016411	-7.6109E-06	0.023176	1.0748E-05	0.0067649	3.1373E-06	463.7584370409541	47.086	0.23293	47.139	47.038	47.271	0.052574					10	8	2	0	0	0	0.3366	1	10657	10657		18.135	8.7875	1	148450			13298	7744	7471	7471	16926	16926					0.036421061056557846
HPFVLQSV	8	Unmodified	_HPFVLQSV_					0	0	0		ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.277099609375	2	463.758352	925.502152	0.83277	0.0003862	-0.81213	-0.00037663	0.020634	9.5691E-06	463.7580873747535	47.101	0.39465	47.155	46.939	47.334	0.054375					14	13	2	0	0	0	0.3366	1	10657	10657		18.135	4.6271	1	177260			13299	7744	7471	7471	16927	16927					0.036421061056557846
HPGPLRPW	8	Unmodified	_HPGPLRPW_					0	0	0		nc|ENSG00000182366|P0C7U9|FAM87A	nc|ENSG00000182366|P0C7U9|FAM87A	nc|ENSG00000182366|P0C7U9|FAM87A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7896423339844	2	480.264136	958.51372	0.091599	4.3992E-05	-4.15	-0.0019931	-4.0584	-0.0019491	480.2622505990576	16.607	0.28358	16.607	16.405	16.689	0					12	9	2	0	0	0	0.34218	1	1368	1368		9.3474	3.587	1	13587			13300	12872	7472	7472	16928	16928					0.03280347919655924
HPGPLRVQL	9	Unmodified	_HPGPLRVQL_					0	0	0			REV__ENST00000520427.1_1_5:139931625-139936746:-|nuORF	REV__ENST00000520427.1_1_5:139931625-139936746:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7825927734375	2	508.803626	1015.5927	0.17415	8.8607E-05	-1.0957	-0.00055748	-0.92151	-0.00046887	508.8030959069624	33.115	0.41596	33.169	33.013	33.429	0.054375					26	14	3	0	0	0	0.25066	1	6411	6411		11.64	0.81637	1	129140	+		13301	21884	7473	7473	16929	16929					0.08552575153953512
HPGPRPAL	8	Unmodified	_HPGPRPAL_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B;KDM5B|p.D895Vfs*26|1|0.35|ENSG00000117139|chr1:202741628-202741628|T/-|frameshift_variant	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2302551269531	2	422.743037	843.471521	-0.029653	-1.2535E-05	0.87376	0.00036937	0.8441	0.00035684	422.7431024275307	20.298	0.43388	20.298	20.136	20.57	0					20	15	2	0	0	0	0.34131	1	2533	2533		12.532	0	1	69942			13302	2777	7474	7474	16930	16930					0.043523725112777356
HPGRLRKSIS	10	Unmodified	_HPGRLRKSIS_					0	0	0			REV__ENST00000376609.1_1_17:47923566-47924646:+|nuORF	REV__ENST00000376609.1_1_17:47923566-47924646:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.843505859375	2	575.843813	1149.67307	0.070971	4.0868E-05	-0.37095	-0.00021361	-0.29998	-0.00017274	575.8430699173696	94.254	1.8902	94.254	93.348	95.238	0					261	163	3	0	0	0	0.38773	1	25120	25120		5.7319	1.7875	1	323260	+		13303	20490	7475	7475	16931	16931					0.10422436476983421
HPGVTQTKS	9	Unmodified	_HPGVTQTKS_					0	0	0		ENST00000507952.1_1_10:75490350-75491018:+|nuORF	ENST00000507952.1_1_10:75490350-75491018:+|nuORF	ENST00000507952.1_1_10:75490350-75491018:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7508239746094	2	477.753798	953.493044	-0.16789	-8.0209E-05	-4.1213	-0.001969	-4.2892	-0.0020492	477.7518012528704	13.638	0.62006	13.638	13.282	13.902	0					37	21	2	0	0	0	0.33508	1	475	475		3.5965	1.019	1	91325			13304	11345	7476	7476	16932	16932					0.014437127493351909
HPGVTQTKS	9	Unmodified	_HPGVTQTKS_					0	0	0		ENST00000507952.1_1_10:75490350-75491018:+|nuORF	ENST00000507952.1_1_10:75490350-75491018:+|nuORF	ENST00000507952.1_1_10:75490350-75491018:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	477.753798	953.493044	-0.12053	-5.7583E-05	-4.7784	-0.0022829	-4.8989	-0.0023405	477.751449714302	13.689	0.65958	13.59	13.249	13.908	-0.099291	-0.046314	-0.00036706	NaN	3.5965	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76652			13305	11345	7476	7476							0.014437127493351909
HPGVTQTKS	9	Unmodified	_HPGVTQTKS_					0	0	0		ENST00000507952.1_1_10:75490350-75491018:+|nuORF	ENST00000507952.1_1_10:75490350-75491018:+|nuORF	ENST00000507952.1_1_10:75490350-75491018:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	477.753798	953.493044	-0.1202	-5.7424E-05	-4.2215	-0.0020168	-4.3417	-0.0020743	477.7517165995745	13.748	0.55688	13.681	13.304	13.861	-0.066068	0.045129	0.00016504	NaN	3.5965	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95665			13306	11345	7476	7476							0.014437127493351909
HPHDLVILM	9	Oxidation (M)	_HPHDLVILM(Oxidation (M))_		HPHDLVILM(1)		HPHDLVILM(54)	0	0	1		ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.7891235351562	2	545.789327	1089.5641	0.63858	0.00034853	-0.7803	-0.00042588	-0.14172	-7.735E-05	545.7891290744108	40.385	0.85424	40.385	40.132	40.986	0					50	30	2	0	0	0	0.048175	1	8678	8678		53.576	13.618	1	607940			13307	675;12574	7477	7477	16933	16933		81			0.022900894624626744
HPHDLVILM	9	Oxidation (M)	_HPHDLVILM(Oxidation (M))_		HPHDLVILM(1)		HPHDLVILM(82)	0	0	1		ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.7892456054688	2	545.789327	1089.5641	0.79236	0.00043246	-0.92838	-0.0005067	-0.13602	-7.4236E-05	545.7890077420941	40.267	0.90588	40.359	40.151	41.057	0.09267					51	33	2	0	0	0	0.0084096	1	8584	8584		81.864	45.398	1	723420			13308	675;12574	7477	7477	16934	16934		81			0.022900894624626744
HPHDLVILM	9	Oxidation (M)	_HPHDLVILM(Oxidation (M))_		HPHDLVILM(1)		HPHDLVILM(110)	0	0	1		ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.7891845703125	2	545.789327	1089.5641	0.72655	0.00039654	-0.75481	-0.00041197	-0.028264	-1.5426E-05	545.7890405611812	40.283	0.66196	40.383	40.118	40.78	0.099407					41	23	2	0	0	0	0.00207	1	8564	8564		109.63	73.163	1	775100			13309	675;12574	7477	7477	16935	16935		81			0.022900894624626744
HPHKGPKR	8	Unmodified	_HPHKGPKR_					0	0	0			REV__ENSG00000153930|ENST00000682825|ANKFN1	REV__ENSG00000153930|ENST00000682825|ANKFN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7619323730469	2	478.780485	955.546417	0.13546	6.4856E-05	-2.9695	-0.0014217	-2.834	-0.0013569	478.7785571557372	33.959	0.16052	34.026	33.939	34.099	0.066704					8	5	2	0	0	0	0.34337	1	6620	6620		5.2307	0.47466	1	49441	+		13310	16637	7478	7478	16936	16936					0.06686555042517739
HPHPFLNSV	9	Unmodified	_HPHPFLNSV_					0	0	0		ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2730102539062	2	524.272158	1046.52976	0.70245	0.00036828	0.32069	0.00016813	1.0231	0.0005364	524.272353212123	34.072	0.83501	34.072	33.753	34.588	0					82	29	4	0	0	0	0.008707	1	6659	6659		88.954	60.467	1	807490			13311	1934	7479	7479	16937	16937					0.008360093659121048
HPHPFLNSV	9	Unmodified	_HPHPFLNSV_					0	0	0		ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2728271484375	2	524.272158	1046.52976	0.80663	0.00042289	0.21103	0.00011064	1.0177	0.00053353	524.2721728867184	33.958	0.94388	34.025	33.704	34.648	0.06636					91	33	4	0	0	0	0.00023138	1	6618	6618		142.08	96.059	1	775420			13312	1934	7479	7479	16938	16938					0.008360093659121048
HPHPFLNSV	9	Unmodified	_HPHPFLNSV_					0	0	0		ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2724609375	2	524.272158	1046.52976	0.34071	0.00017862	0.53853	0.00028233	0.87924	0.00046096	524.2724161835812	33.933	0.91814	34	33.685	34.603	0.066704					79	32	3	0	0	0	0.00063099	1	6603	6603		126.57	84.726	1	939750			13313	1934	7479	7479	16939	16939					0.008360093659121048
HPHQLHSR	8	Unmodified	_HPHQLHSR_					0	0	0		VWA5B2|p.I651Yfs*88|1|0.07|ENSG00000145198|chr3:184238620-184238620|C/-|frameshift_variant	VWA5B2|p.I651Yfs*88|1|0.07|ENSG00000145198|chr3:184238620-184238620|C/-|frameshift_variant	VWA5B2|p.I651Yfs*88|1|0.07|ENSG00000145198|chr3:184238620-184238620|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2738037109375	2	506.265199	1010.51585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.514	1	26.492	25.992	26.992	-0.022238								0	0	0	0.34229	1	4375	4375		18.135	4.2289	1				13314	23412	7480	7480	16940	16940					0.011007766574607558
HPINQGNLI	9	Unmodified	_HPINQGNLI_					0	0	0		NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.L1448*|1|0.12|ENSG00000144426|chr2:203136636-203136636|T/-|frameshift_variant	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2772216796875	2	503.277441	1004.54033	0.38304	0.00019278	-0.38287	-0.00019269	0.00017563	8.8392E-08	503.2772411455924	23.932	0.85979	23.893	23.476	24.336	-0.038927					65	29	3	0	0	0	0.22188	1	3645	3645		20.454	0.039092	1	129370			13315	4584	7481	7481	16941	16941					0.03823992020340938
HPIPGNYTF	9	Unmodified	_HPIPGNYTF_					0	0	0		nc|ENSG00000080709|Q9H2S1|KCNN2;ENSG00000080709|ENST00000673685|KCNN2	nc|ENSG00000080709|Q9H2S1|KCNN2	nc|ENSG00000080709|Q9H2S1|KCNN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2584228515625	2	523.258717	1044.50288	0.45436	0.00023775	-0.12992	-6.7984E-05	0.32443	0.00016976	523.2586193029987	44.041	1.493	44.041	43.576	45.069	0					142	54	4	0	0	0	0.10197	1	9826	9826		37.974	5.6685	1	5397000			13316	1164	7482	7482	16942	16942					-0.017590992453051513
HPIRIPGQ	8	Unmodified	_HPIRIPGQ_					0	0	0		ENSG00000167992|ENST00000335613|VWCE	ENSG00000167992|ENST00000335613|VWCE	ENSG00000167992|ENST00000335613|VWCE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.26983642578125	2	459.269419	916.524284	0.1373	6.3057E-05	0.95975	0.00044078	1.097	0.00050384	459.2695951787447	20.491	0.74055	20.491	20.285	21.026	0					57	25	3	0	0	0	0.41097	1	2544	2544		18.135	0	1	159400			13317	6229	7483	7483	16943	16943					0.06268330574096126
HPIRVVNAL	9	Unmodified	_HPIRVVNAL_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3;ENST00000470043.1_1_10:103792731-103793132:-|nuORF	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8116760253906	2	509.811451	1017.60835	-0.036318	-1.8515E-05	0.85693	0.00043687	0.82062	0.00041836	509.81181233702443	34.352	0.36495	34.352	34.135	34.5	0					24	12	2	0	0	0	0.19747	2	6744	6744;6796		24.021	10.115	1	257910			13318	2926	7484	7484	16944;16945	16944					0.10024861670990504
HPIRVVNAL	9	Unmodified	_HPIRVVNAL_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3;ENST00000470043.1_1_10:103792731-103793132:-|nuORF	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8116149902344	2	509.811451	1017.60835	-0.047127	-2.4026E-05	0.83459	0.00042548	0.78746	0.00040146	509.8119366912191	34.244	0.39521	34.31	34.092	34.487	0.06636					27	13	3	0	0	0	0.10197	1	6726	6726		37.974	17.52	1	242320			13319	2926	7484	7484	16946	16946					0.10024861670990504
HPIRVVNAL	9	Unmodified	_HPIRVVNAL_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3;ENST00000470043.1_1_10:103792731-103793132:-|nuORF	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.81158447265625	2	509.811451	1017.60835	0.053555	2.7303E-05	0.25129	0.00012811	0.30485	0.00015542	509.81176217188096	34.227	0.36234	34.294	34.071	34.434	0.0667					28	12	3	0	0	0	0.19747	1	6714	6714		24.021	5.8856	1	257780			13320	2926	7484	7484	16947	16947					0.10024861670990504
HPISKPLL	8	Unmodified	_HPISKPLL_					0	0	0		ENST00000427859.5_1_1:239870879-239871044:-|nuORF	ENST00000427859.5_1_1:239870879-239871044:-|nuORF	ENST00000427859.5_1_1:239870879-239871044:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.241943359375	2	452.78437	903.554188	0.030377	1.3754E-05	1.2115	0.00054854	1.2419	0.0005623	452.7848821786808	34.027	0.67079	34.094	33.824	34.495	0.0667					39	23	2	0	0	0	0.34046	1	6680	6680		14.582	0	1	257780			13321	10440	7485	7485	16948	16948					0.09855269519437115
HPISSEELLSL	11	Unmodified	_HPISSEELLSL_					0	0	0		nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921-5|ETS1;ETS1|p.G302Hfs*11|1|0.05|ENSG00000134954|chr11:128480277-128480278|CC/-|frameshift_variant	nc|ENSG00000134954|P14921|ETS1	nc|ENSG00000134954|P14921|ETS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.80712890625	2	612.82716	1223.63977	0.63475	0.00038899	-1.141	-0.00069921	-0.5062	-0.00031022	612.8261776640766	60.535	0.49298	60.535	60.387	60.88	0					27	17	2	0	0	0	0.23306	1	14818	14818		43.772	12.504	1	593370			13322	3831	7486	7486	16949	16949					0.036893451237801855
HPISSEELLSL	11	Unmodified	_HPISSEELLSL_					0	0	0		nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921-5|ETS1;ETS1|p.G302Hfs*11|1|0.05|ENSG00000134954|chr11:128480277-128480278|CC/-|frameshift_variant	nc|ENSG00000134954|P14921|ETS1	nc|ENSG00000134954|P14921|ETS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.8058471679688	2	612.82716	1223.63977	0.52006	0.00031871	-0.79454	-0.00048692	-0.27448	-0.00016821	612.8264688766108	60.448	0.49871	60.543	60.368	60.866	0.095093					32	17	2	0	0	0	0.10264	1	14791	14791		39.95	7.164	1	530570			13323	3831	7486	7486	16950	16950					0.036893451237801855
HPISSEELLSL	11	Unmodified	_HPISSEELLSL_					0	0	0		nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921-5|ETS1;ETS1|p.G302Hfs*11|1|0.05|ENSG00000134954|chr11:128480277-128480278|CC/-|frameshift_variant	nc|ENSG00000134954|P14921|ETS1	nc|ENSG00000134954|P14921|ETS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	612.82716	1223.63977	0.61638	0.00037774	-0.86906	-0.00053258	-0.25268	-0.00015485	612.8265268167577	60.542	0.51192	60.533	60.326	60.838	-0.0094566	-0.0043148	-1.271E-05	NaN	39.95	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	712220			13324	3831	7486	7486							0.036893451237801855
HPIYNIKSL	9	Unmodified	_HPIYNIKSL_					0	0	0		ENSG00000111615|ENST00000229214|KRR1	ENSG00000111615|ENST00000229214|KRR1	ENSG00000111615|ENST00000229214|KRR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.81201171875	2	542.811116	1083.60768	0.10136	5.5019E-05	1.0619	0.00057643	1.1633	0.00063145	542.8115526204372	38.781	0.61638	38.781	38.518	39.135	0					56	21	3	0	0	0	0.075356	1	8088	8088		63.961	25.785	1	754650			13325	2371	7487	7487	16951	16951					0.06922022231265146
HPIYNIKSL	9	Unmodified	_HPIYNIKSL_					0	0	0		ENSG00000111615|ENST00000229214|KRR1	ENSG00000111615|ENST00000229214|KRR1	ENSG00000111615|ENST00000229214|KRR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8125610351562	2	542.811116	1083.60768	0.52545	0.00028522	0.51706	0.00028067	1.0425	0.00056589	542.8112416832894	38.696	0.65763	38.787	38.542	39.2	0.090881					56	23	3	0	0	0	0.0079761	1	8059	8059		82.529	36.83	1	897060			13326	2371	7487	7487	16952	16952					0.06922022231265146
HPIYNIKSL	9	Unmodified	_HPIYNIKSL_					0	0	0		ENSG00000111615|ENST00000229214|KRR1	ENSG00000111615|ENST00000229214|KRR1	ENSG00000111615|ENST00000229214|KRR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8120727539062	2	542.811116	1083.60768	0.73305	0.00039791	0.093971	5.1008E-05	0.82702	0.00044892	542.8111618458489	38.706	0.69268	38.804	38.518	39.21	0.098133					65	24	4	0	0	0	0.014206	1	8069	8069		72.968	27.268	1	764720			13327	2371	7487	7487	16953	16953					0.06922022231265146
HPKERNRARN	10	Unmodified	_HPKERNRARN_					0	0	0			REV__nc|ENSG00000223806|Q6XXX2|LINC00114	REV__nc|ENSG00000223806|Q6XXX2|LINC00114	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.2350769042969	3	426.569309	1276.6861	0.25811	0.0001101	0.50479	0.00021533	0.7629	0.00032543	426.5694452889228	20.439	0.46593	20.387	20.229	20.695	-0.05291					22	16	2	0	0	0	0.3213	1	2518	2518		0.69767	0	1	78772	+		13328	23194	7488	7488	16954	16954					0.05882267589095136
HPKETTRQL	9	Unmodified	_HPKETTRQL_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3064575195312	2	555.306729	1108.59891	-0.01209	-6.7135E-06	-0.3317	-0.0001842	-0.34379	-0.00019091	555.3064962576302	13.523	0.39479	13.523	13.427	13.822	0					25	13	3	0	0	0	0.25714	1	463	463		15.248	8.1468	1	159930			13329	479	7489	7489	16955	16955					0.048950485947898414
HPKETTRQL	9	Unmodified	_HPKETTRQL_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3064575195312	2	555.306729	1108.59891	-0.051729	-2.8726E-05	-0.137	-7.6075E-05	-0.18873	-0.0001048	555.3065002771401	13.598	0.43258	13.499	13.362	13.795	-0.099291					32	15	3	0	0	0	0.25714	1	483	483		15.248	8.1468	1	127440			13330	479	7489	7489	16956	16956					0.048950485947898414
HPKETTRQL	9	Unmodified	_HPKETTRQL_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3064575195312	2	555.306729	1108.59891	-0.12309	-6.8355E-05	-0.27338	-0.00015181	-0.39647	-0.00022016	555.3066269541672	13.656	0.35663	13.588	13.416	13.773	-0.067432					35	12	4	0	0	0	0.25714	1	480	480		15.248	8.1468	1	131050			13331	479	7489	7489	16957	16957					0.048950485947898414
HPKKGTHI	8	Unmodified	_HPKKGTHI_					0	0	0			REV__ENSG00000198093|ENST00000354957|ZNF649	REV__ENSG00000198093|ENST00000354957|ZNF649	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2695007324219	2	459.269419	916.524284	0.43159	0.00019822	0.39179	0.00017994	0.82338	0.00037815	459.2694375416037	20.625	0.6499	20.572	20.327	20.977	-0.052912					50	22	4	0	0	0	0.42371	1	2623	2623		14.838	1.3304	1	174810	+		13332	18799	7490	7490	16958	16958					0.06268330574084757
HPLEGTHEL	9	Unmodified	_HPLEGTHEL_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000571676.5_1_16:11858892-11864657:-|nuORF;ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	ENSG00000122299|ENST00000355758|ZC3H7A;ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7688598632812	2	516.759081	1031.50361	0.2659	0.00013741	0.21469	0.00011094	0.4806	0.00024835	516.7591474892195	24.156	0.33813	24.156	24.085	24.423	0					15	11	2	0	0	0	0.25314	1	3656	3656		15.847	4.2069	1	59254			13333	3037;23414	7491	7491	16959	16959					-0.010883045962373217
HPLEGTHEL	9	Unmodified	_HPLEGTHEL_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000571676.5_1_16:11858892-11864657:-|nuORF;ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	ENSG00000122299|ENST00000355758|ZC3H7A;ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7691650390625	2	516.759081	1031.50361	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.296	1	24.257	23.757	24.757	-0.038927								0	0	0	0.20238	1	3705	3705		21.747	4.8044	1				13334	3037;23414	7491	7491	16960	16960					-0.010883045962373217
HPLIPTSLSPF	11	Unmodified	_HPLIPTSLSPF_					0	0	0		ENST00000379441.7_1_12:56992027-56992288:-|nuORF	ENST00000379441.7_1_12:56992027-56992288:-|nuORF	ENST00000379441.7_1_12:56992027-56992288:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.8374633789062	2	604.837331	1207.66011	0.31527	0.00019068	0.007069	4.2756E-06	0.32233	0.00019496	604.8373101867605	67.84	0.42652	67.824	67.644	68.071	-0.016296					29	14	3	0	0	0	0.39234	1	17044	17044		12.241	0.74595	1	229060			13335	9966	7492	7492	16961	16961					0.06458560574219518
HPLIPTSLSPF	11	Unmodified	_HPLIPTSLSPF_					0	0	0		ENST00000379441.7_1_12:56992027-56992288:-|nuORF	ENST00000379441.7_1_12:56992027-56992288:-|nuORF	ENST00000379441.7_1_12:56992027-56992288:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	604.837331	1207.66011	0.49318	0.00029829	-0.028012	-1.6943E-05	0.46517	0.00028135	604.8375129721574	67.847	0.40038	67.847	67.647	68.048	0	0.01346	4.8988E-05	NaN	12.241	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165350			13336	9966	7492	7492							0.06458560574219518
HPLIPTSLSPF	11	Unmodified	_HPLIPTSLSPF_					0	0	0		ENST00000379441.7_1_12:56992027-56992288:-|nuORF	ENST00000379441.7_1_12:56992027-56992288:-|nuORF	ENST00000379441.7_1_12:56992027-56992288:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	604.837331	1207.66011	0.67928	0.00041086	-0.33804	-0.00020446	0.34124	0.0002064	604.8370638534494	67.752	0.47459	67.83	67.576	68.05	0.078041	-0.0037714	-0.00032605	NaN	12.241	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201910			13337	9966	7492	7492							0.06458560574219518
HPLIPTSLSPF	11	Unmodified	_HPLIPTSLSPF_					0	0	0		ENST00000379441.7_1_12:56992027-56992288:-|nuORF	ENST00000379441.7_1_12:56992027-56992288:-|nuORF	ENST00000379441.7_1_12:56992027-56992288:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	604.837331	1207.66011	0.31527	0.00019068	0.007069	4.2756E-06	0.32233	0.00019496	604.8373101867605	67.84	0.42652	67.824	67.644	68.071	-0.016296	-0.0096888	9.1424E-05	NaN	12.241	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229060			13338	9966	7492	7492							0.06458560574219518
HPLKVVRF	8	Unmodified	_HPLKVVRF_					0	0	0			REV__ENST00000493217.1_1_7:100071895-100075661:-|nuORF	REV__ENST00000493217.1_1_7:100071895-100075661:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.30987548828125	2	498.311087	994.60762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.949	1	93.949	93.449	94.449	0								0	0	0	0.36169	1	25042	25042		9.3474	4.1168	1		+		13339	17348	7493	7493	16962	16962					0.11010067021948089
HPLKVVRF	8	Unmodified	_HPLKVVRF_					0	0	0			REV__ENST00000493217.1_1_7:100071895-100075661:-|nuORF	REV__ENST00000493217.1_1_7:100071895-100075661:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3100891113281	2	498.311087	994.60762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.082	1	94.082	93.582	94.582	0								0	0	0	0.37078	1	25080	25080		5.2307	0.47466	1		+		13340	17348	7493	7493	16963	16963					0.11010067021948089
HPLLPAPAEP	10	Unmodified	_HPLLPAPAEP_					0	0	0			REV__ENST00000485631.1_1_22:18189492-18210297:+|nuORF	REV__ENST00000485631.1_1_22:18189492-18210297:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8167114257812	2	521.290017	1040.56548	0.75186	0.00039194	-1.125	-0.00058644	-0.37312	-0.0001945	521.2890151697442	45.651	0.3809	45.651	45.424	45.805	0					22	13	2	0	0	0	0.31039	1	10193	10193		13.042	1.5478	1	183960	+		13341	14146	7494	7494	16964	16964					0.0468204682290434
HPLQGPLR	8	Unmodified	_HPLQGPLR_					0	0	0			REV__ENST00000423241.6_1_2:201983266-201994474:+|nuORF	REV__ENST00000423241.6_1_2:201983266-201994474:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.2695007324219	2	459.269419	916.524284	0.1373	6.3057E-05	0.95975	0.00044078	1.097	0.00050384	459.2695951787447	20.491	0.74055	20.491	20.285	21.026	0					57	25	3	0	0	0	0.42758	1	2593	2593		13.508	0	1	159400	+		13342	20878	7495	7495	16965	16965					0.06268330574096126
HPLQGPLR	8	Unmodified	_HPLQGPLR_					0	0	0			REV__ENST00000423241.6_1_2:201983266-201994474:+|nuORF	REV__ENST00000423241.6_1_2:201983266-201994474:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.26947021484375	2	459.269419	916.524284	0.38919	0.00017874	0.19569	8.9876E-05	0.58489	0.00026862	459.26927601595406	20.765	0.65628	20.655	20.407	21.063	-0.11003					54	22	4	0	0	0	0.42758	1	2669	2669		13.508	0	1	162460	+		13343	20878	7495	7495	16966	16966					0.06268330574096126
HPLRPAPVIP	10	Unmodified	_HPLRPAPVIP_					0	0	0			REV__ENST00000493076.5_1_22:35819109-35819445:+|nuORF	REV__ENST00000493076.5_1_22:35819109-35819445:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.2962646484375	2	548.834926	1095.6553	0.42583	0.00023371	-1.0988	-0.00060308	-0.67299	-0.00036936	549.3363543436983	59.846	1.0974	59.834	59.28	60.378	-0.011486					49	38	2	0	0	0	0.318	1	14549	14549		7.2892	2.5332	1	2615700	+		13344	21632	7496	7496	16967	16967					0.11129721222141598
HPLRTKNAL	9	Unmodified	_HPLRTKNAL_					0	0	0			REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3146362304688	2	525.314358	1048.61416	0.4174	0.00021926	0.048072	2.5253E-05	0.46547	0.00024452	525.3141650685626	16.558	0.28659	16.558	16.433	16.72	0					15	9	2	0	0	0	0.31417	1	1381	1381		6.7232	0.99131	1	55358	+		13345	18433	7497	7497	16968	16968					0.09179960182632385
HPLRWFPLL	9	Unmodified	_HPLRWFPLL_					0	0	0			REV__ENST00000610009.5_1_4:4543943-4544069:+|nuORF	REV__ENST00000610009.5_1_4:4543943-4544069:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.845703125	2	589.845294	1177.67603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.48	1	119.5	119	120	0.027756								0	0	0	0.26704	1	30901	30901		0.6015	0.076735	1		+		13346	22677	7498	7498	16969	16969					0.09430311601795438
HPLVCGPAFA	10	Unmodified	_HPLVCGPAFA_					0	0	0		nc|ENSG00000167112|O95900-2|TRUB2;ENSG00000167112|ENST00000372890|TRUB2;ENST00000460320.1_1_9:131078140-131084687:-|nuORF	nc|ENSG00000167112|O95900-2|TRUB2;ENST00000460320.1_1_9:131078140-131084687:-|nuORF	nc|ENSG00000167112|O95900-2|TRUB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7731018066406	2	506.257662	1010.50077	0.30664	0.00015524	1.8843	0.00095394	2.1909	0.0011092	506.25900407175357	81.634	1.1792	81.634	81.108	82.287	0					81	47	3	0	0	0	0.31395	1	21474	21474		12.532	1.7076	1	258410			13347	6150;10726	7499	7499	16970	16970					-0.004058512547430837
HPLVILNI	8	Unmodified	_HPLVILNI_					0	0	0		ENSG00000168090|ENST00000303904|COPS6;ENST00000465027.1_1_7:99686595-99687052:+|nuORF;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7923583984375	2	459.792195	917.569838	0.20623	9.4821E-05	-0.0089216	-4.1021E-06	0.1973	9.0719E-05	459.7921610018249	63.723	1.0992	63.723	63.413	64.513	0					98	39	4	0	0	0	0.12267	3	15779	15779;15827;15876		56.541	16.093	1	1243500			13348	6246	7500	7500	16971;16972;16973	16971					0.10775556036469425
HPLVILNI	8	Unmodified	_HPLVILNI_					0	0	0		ENSG00000168090|ENST00000303904|COPS6;ENST00000465027.1_1_7:99686595-99687052:+|nuORF;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.79217529296875	2	459.792195	917.569838	0.22977	0.00010564	-0.095382	-4.3856E-05	0.13438	6.1789E-05	459.79211150377233	63.555	1.2735	63.651	63.39	64.663	0.095722					95	45	4	0	0	0	0.058048	2	15748	15748;15793		74.396	24.727	1	1151000			13349	6246	7500	7500	16974;16975	16974					0.10775556036469425
HPLVILNI	8	Unmodified	_HPLVILNI_					0	0	0		ENSG00000168090|ENST00000303904|COPS6;ENST00000465027.1_1_7:99686595-99687052:+|nuORF;ENST00000496358.1_1_7:99686670-99688376:+|nuORF	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.79229736328125	2	459.792195	917.569838	0.35783	0.00016453	-0.26433	-0.00012154	0.093504	4.2992E-05	459.7920336075825	63.733	1.0926	63.724	63.351	64.444	-0.0085564					94	39	4	0	0	0	0.10409	2	15818	15768;15818		59.795	16.093	1	1139100			13350	6246	7500	7500	16976;16977	16977					0.10775556036469425
HPNSNLLDL	9	Unmodified	_HPNSNLLDL_					0	0	0		ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1	ENSG00000006125|ENST00000610402|AP2B1	ENSG00000006125|ENST00000610402|AP2B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.8272705078125	2	511.766906	1021.51926	0.44446	0.00022746	-1.5891	-0.00081326	-1.1447	-0.0005858	511.76673552028785	49.282	1.1943	49.282	48.883	50.077	0					109	43	4	0	0	0	0.17696	1	11331	11331		36.506	11.107	1	642890			13351	355	7501	7501	16978	16978					0.009359819208043518
HPNSNLLDL	9	Unmodified	_HPNSNLLDL_					0	0	0		ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1	ENSG00000006125|ENST00000610402|AP2B1	ENSG00000006125|ENST00000610402|AP2B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.8272705078125	2	511.766906	1021.51926	0.25164	0.00012878	-1.5125	-0.00077407	-1.2609	-0.00064529	511.7668707660009	49.292	1.3309	49.337	48.961	50.292	0.044891					121	49	4	0	0	0	0.14646	1	11347	11347		43.772	9.67	1	782500			13352	355	7501	7501	16979	16979					0.009359819208043518
HPNSNLLDL	9	Unmodified	_HPNSNLLDL_					0	0	0		ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1	ENSG00000006125|ENST00000610402|AP2B1	ENSG00000006125|ENST00000610402|AP2B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.8271179199219	2	511.766906	1021.51926	0.11675	5.975E-05	-1.2718	-0.00065088	-1.1551	-0.00059114	511.7668274896299	49.207	1.1206	49.239	48.904	50.025	0.032047					99	40	3	0	0	0	0.17696	1	11326	11326		36.506	6.2814	1	741180			13353	355	7501	7501	16980	16980					0.009359819208043518
HPPRPFFG	8	Unmodified	_HPPRPFFG_					0	0	0			REV__ENST00000435712.1_1_10:131904549-131906742:+|nuORF	REV__ENST00000435712.1_1_10:131904549-131906742:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7527770996094	2	477.750862	953.487171	-0.16789	-8.0209E-05	2.0254	0.00096766	1.8576	0.00088745	477.7518012528704	13.638	0.62006	13.638	13.282	13.902	0					37	21	2	0	0	0	0.45942	1	492	492		2.5775	0	1	91325	+		13354	20999	7502	7502	16981	16981					0.008566590283294317
HPPRPFFG	8	Unmodified	_HPPRPFFG_					0	0	0			REV__ENST00000435712.1_1_10:131904549-131906742:+|nuORF	REV__ENST00000435712.1_1_10:131904549-131906742:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.75042724609375	2	477.750862	953.487171	-0.12053	-5.7583E-05	1.3683	0.00065372	1.2478	0.00059614	477.751449714302	13.689	0.65958	13.59	13.249	13.908	-0.099291					41	23	2	0	0	0	0.45942	1	497	497		2.5775	0	1	76652	+		13355	20999	7502	7502	16982	16982					0.008566590283294317
HPPRYYVRPFF	11	Unmodified	_HPPRYYVRPFF_					0	0	0			REV__ENST00000469074.1_1_1:156697530-156698223:-|nuORF	REV__ENST00000469074.1_1_1:156697530-156698223:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.9294128417969	3	493.594573	1477.76189	0.52445	0.00025887	0.42106	0.00020783	0.94552	0.0004667	493.5947369255161	20.922	1.0753	20.869	20.525	21.6	-0.05291					96	37	4	0	0	0	0.46392	2	2656	2656;2705		2.8433	2.6312	1	625600	+		13356	21335	7503	7503	16983;16984	16983					0.042118517166272795
HPPRYYVRPFF	11	Unmodified	_HPPRYYVRPFF_					0	0	0			REV__ENST00000469074.1_1_1:156697530-156698223:-|nuORF	REV__ENST00000469074.1_1_1:156697530-156698223:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.59515380859375	3	493.594573	1477.76189	0.52445	0.00025887	0.42106	0.00020783	0.94552	0.0004667	493.5947369255161	20.922	1.0753	20.869	20.525	21.6	-0.05291					96	37	4	0	0	0	0.33296	1	2705	2705		2.6312	2.6312	1	625600	+		13357	21335	7503	7503	16985	16985					0.042118517166272795
HPPSHWPLI	9	Unmodified	_HPPSHWPLI_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7994995117188	2	542.290351	1082.56615	0.4059	0.00022012	0.34797	0.0001887	0.75387	0.00040882	542.2905677497146	46.275	1.4184	46.275	45.694	47.112	0					87	50	2	0	0	0	0.24311	1	10256	10256		11.64	11.64	1	1582900			13358	6239	7504	7504	16986	16986					0.028168862625989277
HPPSHWPLI	9	Unmodified	_HPPSHWPLI_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.800537109375	2	542.290351	1082.56615	0.40267	0.00021836	0.59143	0.00032073	0.9941	0.00053909	542.2906993831774	45.985	1.2599	46.045	45.593	46.853	0.059837					85	45	2	0	0	0	0.14099	1	10283	10283		42.095	27.256	1	1539000			13359	6239	7504	7504	16987	16987					0.028168862625989277
HPPSHWPLI	9	Unmodified	_HPPSHWPLI_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7998657226562	2	542.290351	1082.56615	0.6346	0.00034414	0.42874	0.0002325	1.0633	0.00057664	542.2905939024612	46.024	1.8003	46.089	45.595	47.395	0.065048					109	64	2	0	0	0	0.19839	1	10228	10228		21.747	11.563	1	1270600			13360	6239	7504	7504	16988	16988					0.028168862625989277
HPPSLAELVP	10	Unmodified	_HPPSLAELVP_					0	0	0			REV__ENSG00000188112|ENST00000341865|C6orf132	REV__ENSG00000188112|ENST00000341865|C6orf132	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2951049804688	2	530.295299	1058.57605	0.37529	0.00019902	-0.24546	-0.00013017	0.12983	6.8848E-05	530.295389451579	92.556	1.088	92.645	91.824	92.912	0.089203					118	74	3	0	0	0	0.3156	1	24545	24545		10.824	0	1	183400	+		13361	18541	7505	7505	16989	16989					0.04910029477309763
HPPSPKFHF	9	Unmodified	_HPPSPKFHF_					0	0	0			REV__nc|ENSG00000119508|Q92570-3|NR4A3	REV__nc|ENSG00000119508|Q92570-3|NR4A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.2748413085938	2	547.282526	1092.5505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.47	1	38.561	38.061	39.061	0.090881								0	0	0	0.20238	1	8023	8023		21.747	1.293	1		+		13362	15042	7506	7506	16990	16990					0.007925997455686229
HPQHPHGRTHL	11	Unmodified	_HPQHPHGRTHL_					0	0	0		ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.56195068359375	3	439.562155	1315.66463	-0.25086	-0.00011027	-0.21968	-9.6565E-05	-0.47054	-0.00020683	439.56202343623056	13.024	0.52224	13.024	12.874	13.396	0					42	18	4	0	0	0	0.38248	1	311	311		13.535	4.7831	1	128430			13363	3086	7507	7507	16991	16991					0.019428825603881705
HPQHPHGRTHL	11	Unmodified	_HPQHPHGRTHL_					0	0	0		ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.56201171875	3	439.562155	1315.66463	-0.29927	-0.00013155	-0.37655	-0.00016552	-0.67582	-0.00029706	439.56194885330063	13.085	0.59146	13.018	12.851	13.443	-0.067496					45	20	5	0	0	0	0.3915	1	321	321		12.35	8.2337	1	123750			13364	3086	7507	7507	16992	16992					0.019428825603881705
HPQRPLVL	8	Unmodified	_HPQRPLVL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;ENST00000495849.5_1_2:191897681-192012929:-|nuORF;ENSG00000138378|ENST00000392320|STAT4	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7671203613281	2	480.292894	958.571235	0.27107	0.00013019	-0.84567	-0.00040617	-0.57461	-0.00027598	480.2927209455206	28.886	0.46451	28.886	28.729	29.193	0					31	16	2	0	0	0	0.34131	1	5110	5110		12.532	3.1841	1	140020			13365	2643	7508	7508	16993	16993					0.0902919012522716
HPQRPLVL	8	Unmodified	_HPQRPLVL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;ENST00000495849.5_1_2:191897681-192012929:-|nuORF;ENSG00000138378|ENST00000392320|STAT4	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7670593261719	2	480.292894	958.571235	0.22718	0.00010911	-0.0024088	-1.1569E-06	0.22477	0.00010796	480.2928417850004	28.938	0.50774	28.934	28.72	29.228	-0.0042572					26	17	2	0	0	0	0.34131	1	5138	5138		12.532	12.532	1	182780			13366	2643	7508	7508	16994	16994					0.0902919012522716
HPQRPLVL	8	Unmodified	_HPQRPLVL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;ENST00000495849.5_1_2:191897681-192012929:-|nuORF;ENSG00000138378|ENST00000392320|STAT4	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.766845703125	2	480.292894	958.571235	0.12052	5.7884E-05	-0.59947	-0.00028792	-0.47895	-0.00023004	480.2929645504111	28.923	0.60147	28.936	28.758	29.359	0.013474					36	21	3	0	0	0	0.3366	1	5115	5115		18.135	4.6271	1	172740			13367	2643	7508	7508	16995	16995					0.0902919012522716
HPQVQKQQLAL	11	Unmodified	_HPQVQKQQLAL_					0	0	0			REV__ENSG00000215910|ENST00000688073|C1orf167	REV__ENSG00000215910|ENST00000688073|C1orf167	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.8035888671875	2	645.369861	1288.72517	0.69524	0.00044868	-0.21957	-0.0001417	0.47566	0.00030698	645.3696250860901	47.299	0.44616	47.299	47.187	47.634	0					36	15	3	0	0	0	0.33149	1	10731	10731		5.2969	0.96765	1	254160	+		13368	19082	7509	7509	16996	16996					0.09235555100099191
HPRASTIFL	9	Unmodified	_HPRASTIFL_					0	0	0		nc|ENSG00000108100|Q8ND76-3|CCNY;ENSG00000108100|ENST00000374704|CCNY;ENST00000470025.1_1_10:35723054-35790493:+|nuORF;ENST00000426799.1_1_X:65041564-65042074:-|nuORF;nc|ENSG00000163249|Q8N7R7-3|CCNYL1;nc|ENSG00000163249|Q8N7R7-2|CCNYL1;CCNYL1|p.L322Nfs*3|1|0.06|ENSG00000163249|chr2:207751113-207751114|-/AATGT|frameshift_variant;ENSG00000163249|ENST00000295414|CCNYL1	nc|ENSG00000108100|Q8ND76-3|CCNY	nc|ENSG00000108100|Q8ND76-3|CCNY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2960205078125	2	521.295633	1040.57671	0.40187	0.00020949	0.19337	0.0001008	0.59523	0.00031029	521.2956501827132	38.102	1.1923	38.102	37.82	39.012	0					108	42	4	0	0	0	0.088443	3	7988	7889;7940;7988		39.95	8.8774	1	1599100			13369	2164	7510	7510	16997;16998;16999	16999					0.0580486891703913
HPRASTIFL	9	Unmodified	_HPRASTIFL_					0	0	0		nc|ENSG00000108100|Q8ND76-3|CCNY;ENSG00000108100|ENST00000374704|CCNY;ENST00000470025.1_1_10:35723054-35790493:+|nuORF;ENST00000426799.1_1_X:65041564-65042074:-|nuORF;nc|ENSG00000163249|Q8N7R7-3|CCNYL1;nc|ENSG00000163249|Q8N7R7-2|CCNYL1;CCNYL1|p.L322Nfs*3|1|0.06|ENSG00000163249|chr2:207751113-207751114|-/AATGT|frameshift_variant;ENSG00000163249|ENST00000295414|CCNYL1	nc|ENSG00000108100|Q8ND76-3|CCNY	nc|ENSG00000108100|Q8ND76-3|CCNY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2958374023438	2	521.295633	1040.57671	0.44648	0.00023275	-0.16613	-8.6605E-05	0.28035	0.00014614	521.2956816949677	37.99	1.1804	38.081	37.821	39.001	0.090885					111	42	4	0	0	0	0.058995	2	7907	7907;7961		49.554	15.153	1	1387300			13370	2164	7510	7510	17000;17001	17000					0.0580486891703913
HPRASTIFL	9	Unmodified	_HPRASTIFL_					0	0	0		nc|ENSG00000108100|Q8ND76-3|CCNY;ENSG00000108100|ENST00000374704|CCNY;ENST00000470025.1_1_10:35723054-35790493:+|nuORF;ENST00000426799.1_1_X:65041564-65042074:-|nuORF;nc|ENSG00000163249|Q8N7R7-3|CCNYL1;nc|ENSG00000163249|Q8N7R7-2|CCNYL1;CCNYL1|p.L322Nfs*3|1|0.06|ENSG00000163249|chr2:207751113-207751114|-/AATGT|frameshift_variant;ENSG00000163249|ENST00000295414|CCNYL1	nc|ENSG00000108100|Q8ND76-3|CCNY	nc|ENSG00000108100|Q8ND76-3|CCNY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2957763671875	2	521.295633	1040.57671	0.36037	0.00018786	-0.013758	-7.1719E-06	0.34661	0.00018069	521.295677753634	37.955	1.2193	38.053	37.796	39.015	0.097527					106	43	4	0	0	0	0.0079761	2	7890	7890;7944		82.529	34.183	1	1478800			13371	2164	7510	7510	17002;17003	17002					0.0580486891703913
HPRATFLGL	9	Unmodified	_HPRATFLGL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.75860595703125	2	506.290351	1010.56615	0.46775	0.00023682	-0.3336	-0.0001689	0.13415	6.792E-05	506.2901337427507	44.935	0.53547	45.01	44.723	45.258	0.075047					36	19	2	0	0	0	0.18936	1	9975	9975		32.786	5.902	1	452900			13372	1896	7511	7511	17004	17004					0.06128886262604283
HPRAYFMQL	9	Oxidation (M)	_HPRAYFM(Oxidation (M))QL_		HPRAYFM(1)QL		HPRAYFM(56)QL	0	0	1		ENSG00000161980|ENST00000293860|POLR3K	ENSG00000161980|ENST00000293860|POLR3K	ENSG00000161980|ENST00000293860|POLR3K	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.7927856445312	2	589.792401	1177.57025	0.49474	0.00029179	0.45925	0.00027086	0.95399	0.00056266	589.7927533301942	36.476	0.58571	36.476	36.229	36.815	0					45	20	3	0	0	0	0.041175	2	7400	7400;7431		56.177	40.33	1	605980			13373	5539	7512	7512	17005;17006	17005		668			-0.011433923059939843
HPRAYFMQL	9	Oxidation (M)	_HPRAYFM(Oxidation (M))QL_		HPRAYFM(1)QL		HPRAYFM(72)QL	0	0	1		ENSG00000161980|ENST00000293860|POLR3K	ENSG00000161980|ENST00000293860|POLR3K	ENSG00000161980|ENST00000293860|POLR3K	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.7926025390625	2	589.792401	1177.57025	0.50851	0.00029991	0.12092	7.1317E-05	0.62942	0.00037123	589.7927037764994	36.298	0.55161	36.38	36.233	36.785	0.082355					43	19	3	0	0	0	0.014888	2	7353	7353;7392		71.922	49.186	1	618240			13374	5539	7512	7512	17007;17008	17007		668			-0.011433923059939843
HPRAYFMQL	9	Oxidation (M)	_HPRAYFM(Oxidation (M))QL_		HPRAYFM(1)QL		HPRAYFM(42)QL	0	0	1		ENSG00000161980|ENST00000293860|POLR3K	ENSG00000161980|ENST00000293860|POLR3K	ENSG00000161980|ENST00000293860|POLR3K	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8079223632812	2	589.792401	1177.57025	0.7882	0.00046487	0.08356	4.9283E-05	0.87176	0.00051416	589.7924468518863	36.349	0.6694	36.436	36.17	36.839	0.08625					48	23	3	0	0	0	0.079752	1	7432	7432		41.84	41.84	1	559130			13375	5539	7512	7512	17009	17009		668			-0.011433923059939843
HPRDFFSRL	9	Unmodified	_HPRDFFSRL_					0	0	0		nc|ENSG00000196843|Q03989-5|ARID5A;ENSG00000196843|ENST00000357485|ARID5A;ENST00000497920.1_1_2:97215573-97218047:+|nuORF	nc|ENSG00000196843|Q03989-5|ARID5A	nc|ENSG00000196843|Q03989-5|ARID5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8096923828125	2	587.809439	1173.60433	-0.0075435	-4.4341E-06	0.65024	0.00038222	0.64269	0.00037778	587.8096015817521	39.13	0.55812	39.13	38.844	39.402	0					25	19	2	0	0	0	0.17555	1	8229	8229		27.223	7.9662	1	275130			13376	7905	7513	7513	17010	17010					0.024467721772680306
HPRDFFSRL	9	Unmodified	_HPRDFFSRL_					0	0	0		nc|ENSG00000196843|Q03989-5|ARID5A;ENSG00000196843|ENST00000357485|ARID5A;ENST00000497920.1_1_2:97215573-97218047:+|nuORF	nc|ENSG00000196843|Q03989-5|ARID5A	nc|ENSG00000196843|Q03989-5|ARID5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.8098754882812	2	587.809439	1173.60433	0.18084	0.0001063	0.38583	0.0002268	0.56667	0.0003331	587.8097590170233	39.044	0.46999	39.137	38.862	39.332	0.09267					22	16	2	0	0	0	0.22215	1	8190	8190		20.415	6.5085	1	304140			13377	7905	7513	7513	17011	17011					0.024467721772680306
HPRDFFSRL	9	Unmodified	_HPRDFFSRL_					0	0	0		nc|ENSG00000196843|Q03989-5|ARID5A;ENSG00000196843|ENST00000357485|ARID5A;ENST00000497920.1_1_2:97215573-97218047:+|nuORF	nc|ENSG00000196843|Q03989-5|ARID5A	nc|ENSG00000196843|Q03989-5|ARID5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.8090209960938	2	587.809439	1173.60433	0.4797	0.00028197	-0.0080921	-4.7566E-06	0.47161	0.00027722	587.8093568566668	39.106	0.58804	39.206	38.923	39.511	0.099407					31	20	2	0	0	0	0.15763	1	8229	8229		29.841	15.935	1	242600			13378	7905	7513	7513	17012	17012					0.024467721772680306
HPRDPNLLL	9	Unmodified	_HPRDPNLLL_					0	0	0		ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED	ENST00000525244.5_1_11:85956313-85988207:+|nuORF	ENST00000525244.5_1_11:85956313-85988207:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.80615234375	2	537.806365	1073.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.488	1	37.581	37.081	38.081	0.093018								0	0	0	0.10252	1	7717	7717		45.74	17.253	1				13379	1016	7514	7514	17013	17013					0.0643225394574074
HPRDPNLLLSV	11	Unmodified	_HPRDPNLLLSV_					0	0	0		ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED	ENST00000525244.5_1_11:85956313-85988207:+|nuORF	ENST00000525244.5_1_11:85956313-85988207:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8568115234375	2	630.856586	1259.69862	0.61678	0.0003891	-1.1927	-0.00075239	-0.57587	-0.00036329	631.3569264003679	47.891	0.61775	47.891	47.714	48.331	0					36	21	2	0	0	0	0.062106	1	10953	10953		49.742	18.474	1	1640500			13380	1016	7515	7515	17014	17014					0.07915866208736588
HPRDPNLLLSV	11	Unmodified	_HPRDPNLLLSV_					0	0	0		ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED	ENST00000525244.5_1_11:85956313-85988207:+|nuORF	ENST00000525244.5_1_11:85956313-85988207:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	630.856586	1259.69862	0.65373	0.00041241	-1.259	-0.00079424	-0.60525	-0.00038183	631.3567900894424	47.869	0.7	47.916	47.772	48.472	0.047523	0.00070413	-0.00017535	NaN	49.742	38	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1628000			13381	1016	7515	7515							0.07915866208736588
HPRDPNLLLSV	11	Unmodified	_HPRDPNLLLSV_					0	0	0		ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED	ENST00000525244.5_1_11:85956313-85988207:+|nuORF	ENST00000525244.5_1_11:85956313-85988207:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	630.856586	1259.69862	0.5861	0.00036975	-0.73442	-0.00046332	-0.14832	-9.357E-05	631.3569429949114	47.896	0.67961	47.939	47.691	48.371	0.04332	0.023702	0.0004865	NaN	49.742	37	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1308100			13382	1016	7515	7515							0.07915866208736588
HPRGGVIQSV	10	Unmodified	_HPRGGVIQSV_					0	0	0		nc|ENSG00000152242|Q96B23-2|ARK2N;ENSG00000152242|ENST00000615052|C18orf25	nc|ENSG00000152242|Q96B23-2|ARK2N	nc|ENSG00000152242|Q96B23-2|ARK2N	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2780151367188	2	525.296165	1048.57778	0.29938	0.00015726	-1.1442	-0.00060102	-0.84477	-0.00044376	525.2953421899842	22.688	0.5417	22.688	22.505	23.047	0					32	18	2	0	0	0	0.33594	1	3207	3207		15.248	0.41021	1	94845			13383	5009	7516	7516	17015	17015					0.05543083285942885
HPRGGVIQSV	10	Unmodified	_HPRGGVIQSV_					0	0	0		nc|ENSG00000152242|Q96B23-2|ARK2N;ENSG00000152242|ENST00000615052|C18orf25	nc|ENSG00000152242|Q96B23-2|ARK2N	nc|ENSG00000152242|Q96B23-2|ARK2N	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.278076171875	2	525.296165	1048.57778	0.38365	0.00020153	-1.5718	-0.00082568	-1.1882	-0.00062415	525.2952074051864	22.827	0.58032	22.782	22.616	23.197	-0.044867					31	20	2	0	0	0	0.3001	2	3261	3261;3312		20.415	4.5674	1	119950			13384	5009	7516	7516	17016;17017	17016					0.05543083285942885
HPRGPLLL	8	Unmodified	_HPRGPLLL_					0	0	0			REV__ENST00000483002.1_1_16:524982-539001:+|nuORF	REV__ENST00000483002.1_1_16:524982-539001:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.241943359375	2	451.782162	901.549771	-0.014529	-6.5642E-06	-0.39081	-0.00017656	-0.40534	-0.00018313	451.78204526897235	34.1	0.75491	34.167	33.939	34.694	0.0667					50	26	2	0	0	0	0.29855	1	6680	6680		32.117	0	1	230010	+		13385	14045	7517	7517	17018	17018					0.09505805096512177
HPRGRLRGG	9	Unmodified	_HPRGRLRGG_					0	0	0			REV__ENST00000540557.1_1_9:38016114-38068223:-|nuORF	REV__ENST00000540557.1_1_9:38016114-38068223:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2939453125	2	503.294291	1004.57403	0.40485	0.00020376	-0.828	-0.00041673	-0.42315	-0.00021297	503.2937995986763	88.573	0.6405	88.57	88.31	88.951	-0.0028458					58	27	3	0	0	0	0.30623	1	23394	23394		7.9102	2.1497	1	323780	+		13386	22114	7518	7518	17019	17019					0.07192458302745308
HPRGRLRGG	9	Unmodified	_HPRGRLRGG_					0	0	0			REV__ENST00000540557.1_1_9:38016114-38068223:-|nuORF	REV__ENST00000540557.1_1_9:38016114-38068223:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	503.294291	1004.57403	0.47152	0.00023731	-0.89974	-0.00045283	-0.42822	-0.00021552	503.29389195978246	88.597	0.54042	88.597	88.403	88.943	0	0.02147	8.1071E-05	NaN	7.9102	42	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107470	+		13387	22114	7518	7518							0.07192458302745308
HPRGRLRGG	9	Unmodified	_HPRGRLRGG_					0	0	0			REV__ENST00000540557.1_1_9:38016114-38068223:-|nuORF	REV__ENST00000540557.1_1_9:38016114-38068223:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	503.294291	1004.57403	0.39313	0.00019786	-1.1285	-0.00056794	-0.73533	-0.00037009	503.2938039464819	88.469	0.52396	88.559	88.37	88.894	0.089203	-0.016578	-0.00014915	NaN	7.9102	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270940	+		13388	22114	7518	7518							0.07192458302745308
HPRGRLRGG	9	Unmodified	_HPRGRLRGG_					0	0	0			REV__ENST00000540557.1_1_9:38016114-38068223:-|nuORF	REV__ENST00000540557.1_1_9:38016114-38068223:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	503.294291	1004.57403	0.40485	0.00020376	-0.828	-0.00041673	-0.42315	-0.00021297	503.2937995986763	88.573	0.6405	88.57	88.31	88.951	-0.0028458	-0.0048925	0.00015328	NaN	7.9102	58	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323780	+		13389	22114	7518	7518							0.07192458302745308
HPRHPRPAA	9	Unmodified	_HPRHPRPAA_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.78857421875	2	519.788841	1037.56313	0.075129	3.9051E-05	-1.1258	-0.0005852	-1.0507	-0.00054615	519.7885219862201	12.353	0.70313	12.256	12	12.703	-0.096607					58	25	4	0	0	0	0.019896	1	111	111		64.236	46.794	1	677570			13390	4044	7519	7519	17020	17020					0.04585055928464499
HPRHPRPAA	9	Unmodified	_HPRHPRPAA_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7887573242188	2	519.788841	1037.56313	-0.095733	-4.9761E-05	-0.74921	-0.00038943	-0.84494	-0.00043919	519.788709621943	12.385	0.87149	12.317	12.032	12.904	-0.06806					78	31	4	0	0	0	0.062246	1	114	114		48.346	29.089	1	604670			13391	4044	7519	7519	17021	17021					0.04585055928464499
HPRIASGL	8	Unmodified	_HPRIASGL_					0	0	0		ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.74822998046875	2	425.748319	849.482085	-0.23048	-9.8126E-05	-0.17583	-7.486E-05	-0.40631	-0.00017299	425.74827914766297	23.416	0.78654	23.328	23.077	23.864	-0.08761					49	27	2	0	0	0	0.3408	1	3459	3459		14.838	2.3067	1	114860			13392	4488	7520	7520	17022	17022					0.05132355165721947
HPRIASGL	8	Unmodified	_HPRIASGL_					0	0	0		ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.3059387207031	2	425.748319	849.482085	-0.019234	-8.189E-06	-0.29626	-0.00012613	-0.3155	-0.00013432	425.7481601441652	23.454	0.70294	23.41	23.086	23.789	-0.043158					42	24	2	0	0	0	0.34226	1	3422	3422		10.074	2.1638	1	129510			13393	4488	7520	7520	17023	17023					0.05132355165721947
HPRIASGLGL	10	Unmodified	_HPRIASGLGL_					0	0	0		ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8007507324219	2	510.801083	1019.58761	0.09553	4.8797E-05	-0.070103	-3.5809E-05	0.025427	1.2988E-05	510.8008340288659	38.451	0.83534	38.451	38.177	39.012	0					65	29	3	0	0	0	0.015324	1	8021	8021		76.825	34.985	1	814240			13394	4488	7521	7521	17024	17024					0.07860271291337995
HPRIASGLGL	10	Unmodified	_HPRIASGLGL_					0	0	0		ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8009033203125	2	510.801083	1019.58761	0.31685	0.00016185	-0.20088	-0.00010261	0.11597	5.9235E-05	510.80068654138717	38.397	0.93175	38.488	38.237	39.168	0.090881					59	33	3	0	0	0	0.0066037	1	7998	7998		86.332	48.156	1	887960			13395	4488	7521	7521	17025	17025					0.07860271291337995
HPRIASGLGL	10	Unmodified	_HPRIASGLGL_					0	0	0		ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.8009338378906	2	510.801083	1019.58761	0.29615	0.00015128	-0.14989	-7.6564E-05	0.14626	7.4712E-05	510.8007144687484	38.402	0.71759	38.499	38.176	38.893	0.097527					59	25	3	0	0	0	0.048379	1	7985	7985		59.368	31.74	1	812670			13396	4488	7521	7521	17026	17026					0.07860271291337995
HPRPPIPLSL	10	Unmodified	_HPRPPIPLSL_					0	0	0		ENST00000568126.5_1_16:19775348-19800271:+|nuORF;ENST00000568300.6_1_16:19775348-19867867:+|nuORF;ENSG00000174628|ENST00000695302|IQCK	ENST00000568126.5_1_16:19775348-19800271:+|nuORF	ENST00000568126.5_1_16:19775348-19800271:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.84033203125	2	563.840208	1125.66586	0.3978	0.0002243	-0.095374	-5.3775E-05	0.30243	0.00017052	563.8400838501859	51.348	0.94213	51.348	51.055	51.997	0					77	34	4	0	0	0	0.11334	1	11986	11986		70.332	70.332	1	1301100			13397	6808	7522	7522	17027	17027					0.10805703876576445
HPRPPIPLSL	10	Unmodified	_HPRPPIPLSL_					0	0	0		ENST00000568126.5_1_16:19775348-19800271:+|nuORF;ENST00000568300.6_1_16:19775348-19867867:+|nuORF;ENSG00000174628|ENST00000695302|IQCK	ENST00000568126.5_1_16:19775348-19800271:+|nuORF	ENST00000568126.5_1_16:19775348-19800271:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8402709960938	2	563.840208	1125.66586	0.38171	0.00021522	-0.018117	-1.0215E-05	0.36359	0.00020501	563.8402010962096	51.346	0.7774	51.393	51.064	51.842	0.046577					62	28	3	0	0	0	0.16799	1	11986	11986		59.368	21.193	1	1208700			13398	6808	7522	7522	17028	17028					0.10805703876576445
HPRPPIPLSL	10	Unmodified	_HPRPPIPLSL_					0	0	0		ENST00000568126.5_1_16:19775348-19800271:+|nuORF;ENST00000568300.6_1_16:19775348-19867867:+|nuORF;ENSG00000174628|ENST00000695302|IQCK	ENST00000568126.5_1_16:19775348-19800271:+|nuORF	ENST00000568126.5_1_16:19775348-19800271:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.8402099609375	2	563.840208	1125.66586	0.3206	0.00018077	-0.00052947	-2.9854E-07	0.32007	0.00018047	563.8401668634939	51.427	0.97602	51.436	51.068	52.044	0.0095634					72	36	3	0	0	0	0.023567	1	11996	11996		67.838	67.838	1	1350200			13399	6808	7522	7522	17029	17029					0.10805703876576445
HPRRGSLEL	9	Unmodified	_HPRRGSLEL_					0	0	0		ENSG00000160613|ENST00000320934|PCSK7;ENST00000532810.5_1_11:117077509-117079761:-|nuORF;ENST00000533135.1_1_11:117078559-117089797:-|nuORF;ENST00000534529.5_1_11:117078449-117094061:-|nuORF	ENSG00000160613|ENST00000320934|PCSK7	ENSG00000160613|ENST00000320934|PCSK7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.8017578125	2	532.801614	1063.58868	0.34443	0.00018351	-0.41659	-0.00022196	-0.072158	-3.8446E-05	532.8016973973704	19.534	0.80438	19.534	19.211	20.016	0					70	28	3	0	0	0	0.26612	1	2253	2253		13.906	0	1	133240			13400	5474	7523	7523	17030	17030					0.05942485660239072
HPRRGSLEL	9	Unmodified	_HPRRGSLEL_					0	0	0		ENSG00000160613|ENST00000320934|PCSK7;ENST00000532810.5_1_11:117077509-117079761:-|nuORF;ENST00000533135.1_1_11:117078559-117089797:-|nuORF;ENST00000534529.5_1_11:117078449-117094061:-|nuORF	ENSG00000160613|ENST00000320934|PCSK7	ENSG00000160613|ENST00000320934|PCSK7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.8018798828125	2	532.801614	1063.58868	0.3628	0.0001933	-0.75444	-0.00040197	-0.39164	-0.00020867	532.8017013861571	19.651	0.99904	19.535	19.233	20.232	-0.11592					85	34	3	0	0	0	0.24467	1	2311	2311		17.113	3.2068	1	178000			13401	5474	7523	7523	17031	17031					0.05942485660239072
HPRRGSLEL	9	Unmodified	_HPRRGSLEL_					0	0	0		ENSG00000160613|ENST00000320934|PCSK7;ENST00000532810.5_1_11:117077509-117079761:-|nuORF;ENST00000533135.1_1_11:117078559-117089797:-|nuORF;ENST00000534529.5_1_11:117078449-117094061:-|nuORF	ENSG00000160613|ENST00000320934|PCSK7	ENSG00000160613|ENST00000320934|PCSK7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8017578125	2	532.801614	1063.58868	0.53606	0.00028561	-0.68157	-0.00036314	-0.14552	-7.7532E-05	532.8016364191747	19.61	0.80993	19.555	19.309	20.119	-0.055693					63	28	3	0	0	0	0.26612	1	2297	2297		13.906	0	1	166380			13402	5474	7523	7523	17032	17032					0.05942485660239072
HPRSPNVLSV	10	Unmodified	_HPRSPNVLSV_					0	0	0		ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A;HIF1A|p.R754Vfs*2|1|0.13|ENSG00000100644|chr14:61745748-61745748|C/-|frameshift_variant	ENSG00000100644|ENST00000337138|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3095092773438	2	553.309272	1104.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.418	1	31.461	30.961	31.961	0.042364								0	0	0	0.11524	1	5869	5869		51.488	9.6484	1				13403	1620	7524	7524	17033	17033					0.055873524574280964
HPRSPTPTL	9	Unmodified	_HPRSPTPTL_					0	0	0		ENSG00000068489|ENST00000262293|PRR11	ENSG00000068489|ENST00000262293|PRR11	ENSG00000068489|ENST00000262293|PRR11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.2775573730469	2	503.277441	1004.54033	0.19394	9.7604E-05	-0.11978	-6.028E-05	0.074162	3.7324E-05	503.27733876439726	23.832	0.82956	23.832	23.39	24.22	0					57	28	3	0	0	0	0.088443	2	3557	3557;3609		39.95	5.548	1	146140			13404	885	7525	7525	17034;17035	17034					0.03823992020318201
HPRSPTPTL	9	Unmodified	_HPRSPTPTL_					0	0	0		ENSG00000068489|ENST00000262293|PRR11	ENSG00000068489|ENST00000262293|PRR11	ENSG00000068489|ENST00000262293|PRR11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.277587890625	2	503.277441	1004.54033	0.26147	0.00013159	-0.016342	-8.2246E-06	0.24513	0.00012337	503.27732111026705	23.978	0.90229	23.906	23.396	24.298	-0.072559					73	30	3	0	0	0	0.14786	1	3634	3634		31.268	5.0002	1	159320			13405	885	7525	7525	17036	17036					0.03823992020318201
HPRSPTPTL	9	Unmodified	_HPRSPTPTL_					0	0	0		ENSG00000068489|ENST00000262293|PRR11	ENSG00000068489|ENST00000262293|PRR11	ENSG00000068489|ENST00000262293|PRR11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.27764892578125	2	503.277441	1004.54033	0.38304	0.00019278	-0.38287	-0.00019269	0.00017563	8.8392E-08	503.2772411455924	23.932	0.85979	23.893	23.476	24.336	-0.038927					65	29	3	0	0	0	0.22215	1	3591	3591		20.415	4.2654	1	129370			13406	885	7525	7525	17037	17037					0.03823992020318201
HPRTGASAL	9	Unmodified	_HPRTGASAL_					0	0	0		nc|ENSG00000125503|Q9BZL4-5|PPP1R12C;nc|ENSG00000125503|Q9BZL4-2|PPP1R12C;nc|ENSG00000125503|Q9BZL4-3|PPP1R12C;nc|ENSG00000125503|Q9BZL4-4|PPP1R12C;ENSG00000125503|ENST00000263433|PPP1R12C	nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	nc|ENSG00000125503|Q9BZL4-5|PPP1R12C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.24884033203125	2	455.248683	908.482814	-0.044779	-2.0386E-05	1.5058	0.00068549	1.461	0.00066511	455.2492535853258	15.109	0.79239	14.999	14.818	15.61	-0.10981					41	27	2	0	0	0	0.26612	1	918	918		13.906	3.0821	1	96739			13407	3212	7526	7526	17038	17038					0.024911498147389466
HPRTSAQI	8	Unmodified	_HPRTSAQI_					0	0	0		ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1;nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1-3|POMT1	ENSG00000130714|ENST00000402686|POMT1	ENSG00000130714|ENST00000402686|POMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2489013671875	2	455.248683	908.482814	-0.14352	-6.5339E-05	1.1779	0.00053623	1.0344	0.00047089	455.24927303591255	15.252	0.6809	15.188	14.955	15.636	-0.064414					35	22	3	0	0	0	0.4354	1	927	927		10.824	0	1	114020			13408	3502	7527	7527	17039	17039					0.024911498147389466
HPRTSITVV	9	Unmodified	_HPRTSITVV_					0	0	0		ENST00000593523.1_1_19:41897706-41903233:-|nuORF;ENSG00000077348|ENST00000221233|EXOSC5	ENST00000593523.1_1_19:41897706-41903233:-|nuORF	ENST00000593523.1_1_19:41897706-41903233:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.72467041015625	2	505.293091	1008.57163	0.23789	0.0001202	-0.84745	-0.00042821	-0.60956	-0.00030801	505.29251915048235	26.793	0.42151	26.793	26.558	26.979	0					31	14	3	0	0	0	0.25123	1	4442	4442		12.241	5.5175	1	201450			13409	1087	7528	7528	17040	17040					0.06768565054414921
HPRTSITVV	9	Unmodified	_HPRTSITVV_					0	0	0		ENST00000593523.1_1_19:41897706-41903233:-|nuORF;ENSG00000077348|ENST00000221233|EXOSC5	ENST00000593523.1_1_19:41897706-41903233:-|nuORF	ENST00000593523.1_1_19:41897706-41903233:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.724365234375	2	505.293091	1008.57163	0.25736	0.00013004	-0.94081	-0.00047539	-0.68346	-0.00034535	505.29233445333045	26.782	0.53483	26.76	26.506	27.041	-0.02141					42	18	3	0	0	0	0.25123	1	4440	4440		12.241	1.4167	1	174620			13410	1087	7528	7528	17041	17041					0.06768565054414921
HPRTSITVV	9	Unmodified	_HPRTSITVV_					0	0	0		ENST00000593523.1_1_19:41897706-41903233:-|nuORF;ENSG00000077348|ENST00000221233|EXOSC5	ENST00000593523.1_1_19:41897706-41903233:-|nuORF	ENST00000593523.1_1_19:41897706-41903233:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.755126953125	2	505.293091	1008.57163	0.45655	0.00023069	-1.1962	-0.00060444	-0.73966	-0.00037374	505.29225383391076	26.818	0.38921	26.807	26.595	26.984	-0.01156					35	13	3	0	0	0	0.24848	1	4462	4462		13.906	2.2658	1	162280			13411	1087	7528	7528	17042	17042					0.06768565054414921
HPRVFQYF	8	Unmodified	_HPRVFQYF_					0	0	0			REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1	REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.2744140625	2	547.282526	1092.5505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.408	1	38.499	37.999	38.999	0.090881								0	0	0	0.35014	1	8004	8004		14.582	2.9414	1		+		13412	19267	7529	7529	17043	17043					0.007925997455686229
HPRVPQAL	8	Unmodified	_HPRVPQAL_					0	0	0		ENSG00000162040|ENST00000454677|HS3ST6	ENSG00000162040|ENST00000454677|HS3ST6	ENSG00000162040|ENST00000454677|HS3ST6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2292175292969	2	459.269419	916.524284	0.38919	0.00017874	0.19569	8.9876E-05	0.58489	0.00026862	459.26927601595406	20.765	0.65628	20.655	20.407	21.063	-0.11003					54	22	4	0	0	0	0.34046	1	2723	2723		14.582	1.0738	1	162460			13413	5544	7530	7530	17044	17044					0.06268330574084757
HPRVPQAL	8	Unmodified	_HPRVPQAL_					0	0	0		ENSG00000162040|ENST00000454677|HS3ST6	ENSG00000162040|ENST00000454677|HS3ST6	ENSG00000162040|ENST00000454677|HS3ST6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2286682128906	2	459.269419	916.524284	0.43159	0.00019822	0.39179	0.00017994	0.82338	0.00037815	459.2694375416037	20.625	0.6499	20.572	20.327	20.977	-0.052912					50	22	4	0	0	0	0.33245	1	2683	2683		19.439	4.6007	1	174810			13414	5544	7530	7530	17045	17045					0.06268330574084757
HPRWRPTQL	9	Unmodified	_HPRWRPTQL_					0	0	0			REV__ENST00000421199.5_1_2:207989120-208031951:-|nuORF	REV__ENST00000421199.5_1_2:207989120-208031951:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.8482666015625	2	595.830706	1189.64686	-0.019026	-1.1337E-05	0.8238	0.00049085	0.80478	0.00047951	596.332597413808	12.832	0.1489	12.764	12.671	12.819	-0.067496					8	4	3	0	0	0	0.26257	1	227	227		0.52476	0	1	27699	+		13415	20863	7531	7531	17046	17046					0.059621673055062274
HPRYLIPEL	9	Unmodified	_HPRYLIPEL_					0	0	0		ENSG00000149089|ENST00000395787|APIP	ENSG00000149089|ENST00000395787|APIP	ENSG00000149089|ENST00000395787|APIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.3245239257812	2	569.324391	1136.63423	0.067747	3.857E-05	1.0823	0.0006162	1.1501	0.00065477	569.3245351952573	52.226	0.67197	52.225	51.876	52.548	-0.00081253					53	24	3	0	0	0	0.10059	1	12255	12255		38.176	17.722	1	466750			13416	4842	7532	7532	17047	17047					0.07137711122595647
HPRYLIPEL	9	Unmodified	_HPRYLIPEL_					0	0	0		ENSG00000149089|ENST00000395787|APIP	ENSG00000149089|ENST00000395787|APIP	ENSG00000149089|ENST00000395787|APIP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.324391	1136.63423	0.20114	0.00011452	0.81905	0.0004663	1.0202	0.00058082	569.3243062690342	52.054	0.59566	52.054	51.759	52.354	0	-0.05724	-0.00011534	NaN	38.176	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438260			13417	4842	7532	7532							0.07137711122595647
HPRYLIPEL	9	Unmodified	_HPRYLIPEL_					0	0	0		ENSG00000149089|ENST00000395787|APIP	ENSG00000149089|ENST00000395787|APIP	ENSG00000149089|ENST00000395787|APIP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	569.324391	1136.63423	0.3935	0.00022403	0.81455	0.00046374	1.208	0.00068777	569.3242702664384	52.004	0.73856	52.054	51.703	52.441	0.050571	-0.056968	-0.00012046	NaN	38.176	50	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432610			13418	4842	7532	7532							0.07137711122595647
HPSATRIFVGL	11	Unmodified	_HPSATRIFVGL_					0	0	0		ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.3406372070312	2	599.340572	1196.66659	0.62877	0.00037685	0.12976	7.7772E-05	0.75853	0.00045462	599.3406042007547	48.498	0.65061	48.498	48.205	48.856	0					49	21	3	0	0	0	0.2056	1	11113	11113		30.703	13.591	1	1195300			13419	4937	7533	7533	17048	17048					0.07612498525600131
HPSATRIFVGL	11	Unmodified	_HPSATRIFVGL_					0	0	0		ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.341064453125	2	599.340572	1196.66659	0.53813	0.00032252	0.062407	3.7403E-05	0.60053	0.00035992	599.3406777251512	48.446	0.74856	48.489	48.191	48.94	0.04332					54	26	3	0	0	0	0.29388	1	11074	11074		22.775	5.6621	1	1166900			13420	4937	7533	7533	17049	17049					0.07612498525600131
HPSATRIFVGL	11	Unmodified	_HPSATRIFVGL_					0	0	0		ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	599.340572	1196.66659	0.81377	0.00048772	-0.027137	-1.6264E-05	0.78663	0.00047146	599.3405343138071	48.549	0.76121	48.595	48.229	48.99	0.04657	0.067801	-0.00011218	NaN	30.703	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1388200			13421	4937	7533	7533							0.07612498525600131
HPSIMRAAL	9	Oxidation (M)	_HPSIM(Oxidation (M))RAAL_		HPSIM(1)RAAL		HPSIM(56)RAAL	0	0	1		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2737121582031	2	506.273844	1010.53313	0.19579	9.9125E-05	-0.22093	-0.00011185	-0.025134	-1.2725E-05	506.2737161583966	26.35	1.5209	26.35	26.009	27.53	0					118	52	4	0	0	0	0.041175	2	4301	4301;4351		56.177	34.576	1	3050200			13422	3102	7534	7534	17050;17051	17050		388			0.028289361482507047
HPSIMRAAL	9	Oxidation (M)	_HPSIM(Oxidation (M))RAAL_		HPSIM(1)RAAL		HPSIM(54)RAAL	0	0	1		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2738037109375	2	506.273844	1010.53313	0.17445	8.8322E-05	-0.22687	-0.00011486	-0.052418	-2.6538E-05	506.2736934174408	26.352	1.4658	26.314	26.01	27.476	-0.038671					118	51	4	0	0	0	0.047483	2	4344	4303;4344		53.833	28.433	1	3074700			13423	3102	7534	7534	17052;17053	17053		388			0.028289361482507047
HPSIMRAAL	9	Oxidation (M)	_HPSIM(Oxidation (M))RAAL_		HPSIM(1)RAAL		HPSIM(48)RAAL	0	0	1		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.27374267578125	2	506.273844	1010.53313	0.39113	0.00019802	-0.73789	-0.00037357	-0.34675	-0.00017555	506.27362554946825	26.417	1.354	26.395	26.105	27.459	-0.022236					117	47	5	0	0	0	0.063853	1	4324	4324		47.749	28.492	1	3488100			13424	3102	7534	7534	17054	17054		388			0.028289361482507047
HPSLARHVIG	10	Unmodified	_HPSLARHVIG_					0	0	0			REV__nc|ENSG00000145348|Q8TEA7-2|TBCK	REV__nc|ENSG00000145348|Q8TEA7-2|TBCK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2970581054688	2	543.811982	1085.60941	0.15286	8.3128E-05	0.90582	0.0004926	1.0587	0.00057573	544.3141836757698	12.277	0.70274	12.209	11.999	12.702	-0.06806					34	26	2	0	0	0	0.39935	1	115	115		3.5965	0	1	222020	+		13425	16289	7535	7535	17055	17055					0.07003076039904954
HPSLPASSL	9	Unmodified	_HPSLPASSL_					0	0	0		ENSG00000160741|ENST00000368633|CRTC2	ENSG00000160741|ENST00000368633|CRTC2	ENSG00000160741|ENST00000368633|CRTC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.21490478515625	2	454.745442	907.476331	0.1491	6.7801E-05	-0.50786	-0.00023095	-0.35876	-0.00016314	454.74541762340544	38.732	0.7295	38.823	38.347	39.076	0.090881					42	26	3	0	0	0	0.11486	1	8101	8101		48.346	6.2513	1	341370			13426	5482	7536	7536	17056	17056					0.01889211863363016
HPSLPASSL	9	Unmodified	_HPSLPASSL_					0	0	0		ENSG00000160741|ENST00000368633|CRTC2	ENSG00000160741|ENST00000368633|CRTC2	ENSG00000160741|ENST00000368633|CRTC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	454.745442	907.476331	-0.23877	-0.00010858	0.099883	4.5421E-05	-0.13889	-6.3158E-05	454.7455747735316	38.865	0.5542	38.865	38.518	39.073	0	0.027867	0.0004195	NaN	48.346	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281050			13427	5482	7536	7536							0.01889211863363016
HPSLPASSL	9	Unmodified	_HPSLPASSL_					0	0	0		ENSG00000160741|ENST00000368633|CRTC2	ENSG00000160741|ENST00000368633|CRTC2	ENSG00000160741|ENST00000368633|CRTC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	454.745442	907.476331	0.30915	0.00014058	-0.76831	-0.00034938	-0.45916	-0.0002088	454.74523943128753	38.725	0.74583	38.824	38.409	39.155	0.099346	-0.013407	-0.00037011	NaN	48.346	47	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274790			13428	5482	7536	7536							0.01889211863363016
HPSPNQPIRS	10	Unmodified	_HPSPNQPIRS_					0	0	0			REV__nc|ENSG00000189079|Q68CP9-3|ARID2	REV__nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2938232421875	2	566.796529	1131.5785	-0.066161	-3.75E-05	-2.7612	-0.001565	-2.8273	-0.0016025	566.7958525494389	14.511	0.86252	14.445	14.007	14.869	-0.066068					59	30	3	0	0	0	0.39935	1	728	728		3.5965	0.31518	1	86015	+		13429	18596	7537	7537	17057	17057					0.01797877934995995
HPSQLYLR	8	Unmodified	_HPSQLYLR_					0	0	0			REV__nc|ENSG00000144283|Q99569-2|PKP4	REV__nc|ENSG00000144283|Q99569-2|PKP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.3099060058594	2	507.279983	1012.54541	0.18644	9.4575E-05	1.3243	0.0006718	1.5107	0.00076637	507.2804571875373	95.339	0.048691	95.421	95.383	95.432	0.082779					6	5	2	0	0	0	0.34218	1	25463	25463		9.3474	1.4373	1	33714	+		13430	16224	7538	7538	17058	17058					0.039642958829290365
HPSRLLLL	8	Unmodified	_HPSRLLLL_					0	0	0		ENST00000465496.1_1_3:190231957-190236321:+|nuORF;ENST00000505703.1_1_5:139487521-139487644:+|nuORF;ENST00000422625.5_1_3:190231879-190272481:+|nuORF;ENST00000072516.7_2_3:190231855-190282134:+|nuORF;ENST00000439062.5_2_3:190231855-190268205:+|nuORF;ENST00000447382.5_2_3:190231879-190282131:+|nuORF	ENST00000465496.1_1_3:190231957-190236321:+|nuORF	ENST00000465496.1_1_3:190231957-190236321:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.802978515625	2	474.803094	947.591636	0.41262	0.00019591	-0.44452	-0.00021106	-0.031905	-1.5149E-05	474.8028061258596	47.288	0.71805	47.288	47.053	47.771	0					56	25	3	0	0	0	0.31518	1	10747	10747		29.082	0	1	662810			13431	8777	7539	7539	17059	17059					0.1157436078505043
HPSRLLLL	8	Unmodified	_HPSRLLLL_					0	0	0		ENST00000465496.1_1_3:190231957-190236321:+|nuORF;ENST00000505703.1_1_5:139487521-139487644:+|nuORF;ENST00000422625.5_1_3:190231879-190272481:+|nuORF;ENST00000072516.7_2_3:190231855-190282134:+|nuORF;ENST00000439062.5_2_3:190231855-190268205:+|nuORF;ENST00000447382.5_2_3:190231879-190282131:+|nuORF	ENST00000465496.1_1_3:190231957-190236321:+|nuORF	ENST00000465496.1_1_3:190231957-190236321:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.89935302734375	2	474.803094	947.591636	0.81719	0.00038801	-0.98311	-0.00046678	-0.16592	-7.8777E-05	474.80250921462175	47.303	0.66381	47.357	47.093	47.757	0.054375					49	24	3	0	0	0	0.33661	1	10790	10790		19.257	0	1	697070			13432	8777	7539	7539	17060	17060					0.1157436078505043
HPSVSRYHAVL	11	Unmodified	_HPSVSRYHAVL_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5631103515625	3	422.563161	1264.66765	-0.22368	-9.4521E-05	-0.27772	-0.00011735	-0.5014	-0.00021187	422.56286841406506	28.552	0.70169	28.552	28.294	28.996	0.0004673					57	24	3	0	0	0	0.28064	1	4971	4971		23.964	11.108	1	551600			13433	5733	7540	7540	17061	17061					0.045907128945145814
HPSVSRYHAVL	11	Unmodified	_HPSVSRYHAVL_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	422.563161	1264.66765	-0.1851	-7.8218E-05	-0.49219	-0.00020798	-0.6773	-0.0002862	422.5628355685333	28.548	0.75785	28.548	28.277	29.035	0	0.0034763	-8.2772E-05	NaN	23.964	60	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384130			13434	5733	7540	7540							0.045907128945145814
HPSVSRYHAVL	11	Unmodified	_HPSVSRYHAVL_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	422.563161	1264.66765	-0.16632	-7.0279E-05	-0.45296	-0.00019141	-0.61928	-0.00026168	422.5628484881218	28.537	0.73064	28.533	28.333	29.064	-0.0042572	-0.011416	-3.3043E-05	NaN	23.964	52	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	578620			13435	5733	7540	7540							0.045907128945145814
HPTGLSTGAL	10	Unmodified	_HPTGLSTGAL_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7580261230469	2	477.256174	952.497795	-0.52247	-0.00024935	0.20744	9.9002E-05	-0.31503	-0.00015035	477.2561310622271	35.163	0.43865	35.238	34.99	35.429	0.075306					26	15	2	0	0	0	0.31691	1	6962	6962		9.3831	0	1	208500			13436	2497	7541	7541	17062	17062					0.019645968920940504
HPTGLSTGAL	10	Unmodified	_HPTGLSTGAL_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	477.256174	952.497795	-0.66016	-0.00031507	0.0015618	7.454E-07	-0.6586	-0.00031432	477.2559700026112	35.075	0.40873	35.152	35.033	35.441	0.077377	-0.043087	-6.6655E-05	NaN	9.3831	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242630			13437	2497	7541	7541							0.019645968920940504
HPTITQVPK	9	Unmodified	_HPTITQVPK_					0	0	0			REV__nc|ENSG00000164506|Q5T5C0-3|STXBP5	REV__nc|ENSG00000164506|Q5T5C0-3|STXBP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.3293151855469	2	510.795466	1019.57638	-0.011726	-5.9895E-06	0.35385	0.00018075	0.34213	0.00017476	510.7956961972976	29.866	0.44238	29.88	29.653	30.095	0.013475					19	12	2	0	0	0	0.24636	1	5395	5395		16.149	3.1066	1	88547	+		13438	17163	7542	7542	17063	17063					0.06737449197191836
HPTLLPYTF	9	Unmodified	_HPTLLPYTF_					0	0	0		ENST00000305963.2_1_X:135046563-135046683:-|nuORF	ENST00000305963.2_1_X:135046563-135046683:-|nuORF	ENST00000305963.2_1_X:135046563-135046683:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3167724609375	2	544.792392	1087.57023	0.5915	0.00032224	0.98793	0.00053822	1.5794	0.00086046	545.2949968705834	92.009	1.0171	92.099	91.761	92.778	0.090675					94	66	2	0	0	0	0.24913	1	24610	24610		12.532	0.29089	1	141570			13439	9271	7543	7543	17064	17064					0.029949309656331025
HPTLLPYTF	9	Unmodified	_HPTLLPYTF_					0	0	0		ENST00000305963.2_1_X:135046563-135046683:-|nuORF	ENST00000305963.2_1_X:135046563-135046683:-|nuORF	ENST00000305963.2_1_X:135046563-135046683:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7923583984375	2	544.792392	1087.57023	0.55333	0.00030145	0.54268	0.00029565	1.096	0.0005971	544.7919125350631	114.2	0.64891	114.22	114.08	114.73	0.016708					108	79	2	0	0	0	0.32733	1	29725	29725		4.756	0.81161	1	34835			13440	9271	7543	7543	17065	17065					0.029949309656331025
HPTLLPYTF	9	Unmodified	_HPTLLPYTF_					0	0	0		ENST00000305963.2_1_X:135046563-135046683:-|nuORF	ENST00000305963.2_1_X:135046563-135046683:-|nuORF	ENST00000305963.2_1_X:135046563-135046683:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7919921875	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.92	1	116.94	116.44	117.44	0.020988								0	0	0	0.26334	1	30324	30324		2.0598	0	1				13441	9271	7543	7543	17066	17066					0.029949309656331025
HPTLLPYTF	9	Unmodified	_HPTLLPYTF_					0	0	0		ENST00000305963.2_1_X:135046563-135046683:-|nuORF	ENST00000305963.2_1_X:135046563-135046683:-|nuORF	ENST00000305963.2_1_X:135046563-135046683:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.792236328125	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.84	1	117.86	117.36	118.36	0.023476								0	0	0	0.26334	1	30534	30534		2.0598	0	1				13442	9271	7543	7543	17067	17067					0.029949309656331025
HPVLTKPI	8	Unmodified	_HPVLTKPI_					0	0	0			REV__nc|ENSG00000142186|Q96KG9-5|SCYL1	REV__nc|ENSG00000142186|Q96KG9-5|SCYL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2057189941406	2	452.78437	903.554188	0.28169	0.00012755	0.85062	0.00038515	1.1323	0.00051269	452.78478876023814	34.078	0.80765	34.144	33.814	34.622	0.06636					42	28	2	0	0	0	0.34167	1	6786	6786		7.2892	0	1	241990	+		13443	16106	7544	7544	17068	17068					0.09855269519414378
HPVSYVQK	8	Unmodified	_HPVSYVQK_					0	0	0			REV__nc|ENSG00000100890|O15091-2|PRORP	REV__nc|ENSG00000100890|O15091-2|PRORP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2774963378906	2	479.261259	956.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.861	1	86.861	86.361	87.361	0								0	0	0	0.36961	1	22880	22880		5.7604	0	1		+		13444	14236	7545	7545	17069	17069					0.02797204617331772
HPWSVTFRC	9	Unmodified	_HPWSVTFRC_					0	0	0			REV__ENST00000482449.2_1_2:46770614-46770761:+|nuORF	REV__ENST00000482449.2_1_2:46770614-46770761:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.7599487304688	2	566.771468	1131.52838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.908	1	15.846	15.346	16.346	-0.062534								0	0	0	0.2646	1	1167	1167		1.6526	0	1		+		13445	21499	7546	7546	17070	17070					-0.03211947994509501
HPYFNRSKL	9	Unmodified	_HPYFNRSKL_					0	0	0		ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3	ENSG00000196139|ENST00000380554|AKR1C3	ENSG00000196139|ENST00000380554|AKR1C3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.3115234375	2	581.311815	1160.60908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.875	1	24.819	24.319	25.319	-0.055931								0	0	0	0.23182	1	3885	3885		12.241	2.1667	1				13446	7826	7547	7547	17071	17071					0.03519656320031572
HPYGLGPPSL	10	Unmodified	_HPYGLGPPSL_					0	0	0		nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7864379882812	2	519.274367	1036.53418	0.48843	0.00025363	-0.1848	-9.5961E-05	0.30363	0.00015767	519.2742161278645	51.101	0.34862	51.148	50.872	51.221	0.046574					16	12	2	0	0	0	0.2892	1	11882	11882		21.747	3.6117	1	175680			13447	7268	7548	7548	17072	17072					0.017374737888076197
HPYHSSFSF	9	Unmodified	_HPYHSSFSF_					0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3214721679688	2	554.745973	1107.47739	0.56121	0.00031133	-1.429	-0.00079271	-0.86776	-0.00048138	554.7452324440062	64.314	0.51532	64.314	64.158	64.673	0					29	18	2	0	0	0	0.1854	1	15994	15994		32.305	9.1571	1	175530	+		13448	16557	7549	7549	17073	17073					-0.07204573767717193
HPYHSSFSF	9	Unmodified	_HPYHSSFSF_					0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3215942382812	2	554.745973	1107.47739	0.48624	0.00026974	-1.7514	-0.00097157	-1.2651	-0.00070183	554.7449952747281	64.287	0.51615	64.379	64.116	64.633	0.092888					26	18	2	0	0	0	0.21389	1	15922	15922		25.399	8.2864	1	312270	+		13449	16557	7549	7549	17074	17074					-0.07204573767717193
HPYHSSFSF	9	Unmodified	_HPYHSSFSF_					0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.321533203125	2	554.745973	1107.47739	0.46715	0.00025915	-1.5781	-0.00087544	-1.1109	-0.00061629	554.7449903562186	64.372	0.48161	64.362	64.152	64.634	-0.0095367					25	17	2	0	0	0	0.1524	1	15991	15991		39.957	7.6518	1	237530	+		13450	16557	7549	7549	17075	17075					-0.07204573767717193
HPYPTALTV	9	Unmodified	_HPYPTALTV_					0	0	0		nc|ENSG00000148737|Q9NQB0-14|TCF7L2;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;ENSG00000148737|ENST00000355995|TCF7L2	nc|ENSG00000148737|Q9NQB0-14|TCF7L2	nc|ENSG00000148737|Q9NQB0-14|TCF7L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.76910400390625	2	499.768917	997.523281	0.51989	0.00025983	-0.11894	-5.944E-05	0.40096	0.00020039	499.7687919543425	45.08	0.84467	45.149	44.867	45.712	0.068573					57	29	3	0	0	0	0.14099	1	10052	10052		42.095	25.152	1	577290			13451	4827	7550	7550	17076	17076					0.024420714144980593
HPYPTALTV	9	Unmodified	_HPYPTALTV_					0	0	0		nc|ENSG00000148737|Q9NQB0-14|TCF7L2;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;ENSG00000148737|ENST00000355995|TCF7L2	nc|ENSG00000148737|Q9NQB0-14|TCF7L2	nc|ENSG00000148737|Q9NQB0-14|TCF7L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7692565917969	2	499.768917	997.523281	0.46596	0.00023287	-0.33747	-0.00016866	0.12849	6.4213E-05	499.76887405959246	45.121	0.82954	45.196	44.883	45.713	0.075047					60	30	3	0	0	0	0.019896	1	10047	10047		64.236	35.749	1	492030			13452	4827	7550	7550	17077	17077					0.024420714144980593
HPYRLILTV	9	Unmodified	_HPYRLILTV_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3351440429688	2	556.334759	1110.65496	0.55942	0.00031122	-0.37171	-0.00020679	0.18771	0.00010443	556.3347182652354	50.274	2.1207	50.274	49.953	52.074	0					216	78	5	0	0	0	0.037019	5	11668	11619;11668;11718;11771;11821		57.722	15.882	1	12091000			13453	1975	7551	7551	17078;17079;17080;17081;17082	17079					0.1040630150225752
HPYRLILTV	9	Unmodified	_HPYRLILTV_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3349609375	2	556.334759	1110.65496	0.84857	0.00047209	-0.65251	-0.00036302	0.19605	0.00010907	556.3345645524449	50.309	2.0977	50.354	49.957	52.054	0.044891					198	77	5	0	0	0	0.018449	6	11839	11612;11659;11703;11744;11788;11839		66.457	24.617	1	12814000			13454	1975	7551	7551	17083;17084;17085;17086;17087;17088	17088					0.1040630150225752
HPYRLILTV	9	Unmodified	_HPYRLILTV_					0	0	0		ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3349609375	2	556.334759	1110.65496	0.80618	0.0004485	-0.63171	-0.00035144	0.17447	9.7062E-05	556.3345759089685	50.33	2.2259	50.351	49.989	52.215	0.020691					230	83	5	0	0	0	0.018449	6	11855	11614;11662;11712;11756;11804;11855		66.457	16.524	1	12939000			13455	1975	7551	7551	17089;17090;17091;17092;17093;17094	17094					0.1040630150225752
HQAKPTTELL	10	Unmodified	_HQAKPTTELL_					0	0	0			REV__nc|ENSG00000149930|Q9UL54-2|TAOK2	REV__nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.3172607421875	2	569.316763	1136.61897	0.11182	6.3661E-05	0.22621	0.00012878	0.33803	0.00019244	569.3168173068944	26.227	0.48643	26.227	26.042	26.528	0					35	16	3	0	0	0	0.38773	1	4338	4338		5.7319	2.1354	1	136280	+		13456	23028	7552	7552	17095	17095					0.056127995347424076
HQAKPTTELL	10	Unmodified	_HQAKPTTELL_					0	0	0			REV__nc|ENSG00000149930|Q9UL54-2|TAOK2	REV__nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3170776367188	2	569.316763	1136.61897	0.22009	0.0001253	-0.038599	-2.1975E-05	0.18149	0.00010333	569.3167919013583	26.277	0.42429	26.239	26.037	26.461	-0.038671					24	14	2	0	0	0	0.35231	2	4301	4301;4348		12.241	2.8575	1	120380	+		13457	23028	7552	7552	17096;17097	17096					0.056127995347424076
HQAKPTTELL	10	Unmodified	_HQAKPTTELL_					0	0	0			REV__nc|ENSG00000149930|Q9UL54-2|TAOK2	REV__nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.3165893554688	2	569.316763	1136.61897	0.30932	0.0001761	-0.19186	-0.00010923	0.11746	6.6871E-05	569.3166781408665	26.334	0.4516	26.311	26.105	26.556	-0.022238					24	15	2	0	0	0	0.3001	1	4319	4319		20.415	3.3016	1	169690	+		13458	23028	7552	7552	17098	17098					0.056127995347424076
HQAKPTTELL	10	Unmodified	_HQAKPTTELL_					0	0	0			REV__nc|ENSG00000149930|Q9UL54-2|TAOK2	REV__nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.7440795898438	2	569.316763	1136.61897	0.30932	0.0001761	-0.19186	-0.00010923	0.11746	6.6871E-05	569.3166781408665	26.334	0.4516	26.311	26.105	26.556	-0.022238					24	15	2	0	0	0	0.31926	1	4308	4308		5.7319	2.1354	1	169690	+		13459	23028	7552	7552	17099	17099					0.056127995347424076
HQCLPPSF	8	Unmodified	_HQCLPPSF_					0	0	0		ENST00000308677.8_1_19:14203227-14203410:-|nuORF	ENST00000308677.8_1_19:14203227-14203410:-|nuORF	ENST00000308677.8_1_19:14203227-14203410:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7209167480469	2	464.720913	927.427273	-0.040994	-1.9051E-05	0.77514	0.00036022	0.73415	0.00034117	464.72134816830317	80.972	0.3382	80.972	80.809	81.147	0					29	17	2	0	0	0	0.45015	1	21094	21094		5.7604	0	1	137810			13460	9296	7553	7553	17100	17100					-0.039343996972206696
HQCLQMELH	9	Unmodified	_HQCLQMELH_					0	0	0		ENST00000396425.7_1_22:42391277-42391559:+|nuORF	ENST00000396425.7_1_22:42391277-42391559:+|nuORF	ENST00000396425.7_1_22:42391277-42391559:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2850341796875	2	569.760243	1137.50593	0.16511	9.4075E-05	-3.6525	-0.0020811	-3.4874	-0.001987	570.2603849647123	16.874	0.43633	16.759	16.56	16.996	-0.11434					28	15	2	0	0	0	0.26031	1	1512	1512		3.5965	0	1	78294			13461	10116	7554	7554	17101	17101					-0.05731915454452974
HQDFQSYPK	9	Unmodified	_HQDFQSYPK_					0	0	0		ENST00000485335.1_1_2:102640001-102644851:+|nuORF;ENST00000474085.5_1_2:102638602-102644851:+|nuORF;ENSG00000115590|ENST00000332549|IL1R2	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.790771484375	2	575.269813	1148.52507	-0.0095525	-5.4953E-06	0.67421	0.00038785	0.66466	0.00038236	575.2700957010237	22.901	1.3241	22.901	22.563	23.887	0					121	45	5	0	0	0	0.0083763	3	3303	3251;3303;3312		81.915	23.645	1	702950			13462	2660	7555	7555	17102;17103;17104	17103					-0.0432491956753438
HQDFQSYPK	9	Unmodified	_HQDFQSYPK_					0	0	0		ENST00000485335.1_1_2:102640001-102644851:+|nuORF;ENST00000474085.5_1_2:102638602-102644851:+|nuORF;ENSG00000115590|ENST00000332549|IL1R2	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.790771484375	2	575.269813	1148.52507	0.1394	8.0191E-05	0.45614	0.0002624	0.59554	0.00034259	575.269986270234	23.012	1.506	22.924	22.658	24.164	-0.087608					124	52	5	0	0	0	0.011547	3	3332	3287;3332;3347		77.049	23.645	1	831820			13463	2660	7555	7555	17105;17106;17107	17106					-0.0432491956753438
HQDFQSYPK	9	Unmodified	_HQDFQSYPK_					0	0	0		ENST00000485335.1_1_2:102640001-102644851:+|nuORF;ENST00000474085.5_1_2:102638602-102644851:+|nuORF;ENSG00000115590|ENST00000332549|IL1R2	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	ENST00000485335.1_1_2:102640001-102644851:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.27001953125	2	575.269813	1148.52507	0.16264	9.3563E-05	0.49011	0.00028195	0.65275	0.00037551	575.269952642326	23.047	1.1052	23.002	22.709	23.814	-0.044867					104	39	4	0	0	0	0.003929	1	3342	3342		94.909	24.577	1	856980			13464	2660	7555	7555	17108	17108					-0.0432491956753438
HQEHRVMLVN	10	Unmodified	_HQEHRVMLVN_					0	0	0		ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL;nc|ENSG00000035403|P18206-3|VCL	ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.1983947753906	3	421.552268	1261.63497	0.17076	7.1983E-05	-3.353	-0.0014134	-3.1822	-0.0013415	421.5511121625354	33.398	0.1875	33.464	33.323	33.51	0.06636					11	6	2	0	0	0	0.31994	1	6467	6467		5.4027	0	1	62973			13465	573	7556	7556	17109	17109					0.014621825000176614
HQFLKRQH	8	Unmodified	_HQFLKRQH_					0	0	0			REV__ENST00000449185.1_2_X:102564842-102565604:-|nuORF	REV__ENST00000449185.1_2_X:102564842-102565604:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.3060913085938	2	547.304324	1092.5941	0.097772	5.3511E-05	2.0385	0.0011157	2.1363	0.0011692	547.3061352726672	13.181	0.7378	13.181	13.003	13.74	0					64	25	5	0	0	0	0.46022	1	384	384		2.3027	0.4585	1	1308800	+		13466	21101	7557	7557	17110	17110					0.051502092427199386
HQFLLDLSF	9	Unmodified	_HQFLLDLSF_					0	0	0			REV__ENSG00000198853|ENST00000361226|RUSC2	REV__ENSG00000198853|ENST00000361226|RUSC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3079833984375	2	560.295299	1118.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.47	1	104.47	103.97	104.97	0								0	0	0	0.24522	1	27735	27735		7.9102	1.7044	1		+		13467	18877	7558	7558	17111	17111					0.02150029477343196
HQILKSSLRF	10	Unmodified	_HQILKSSLRF_					0	0	0			REV__ENSG00000147789|ENST00000532777|ZNF7	REV__ENSG00000147789|ENST00000532777|ZNF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.23602294921875	3	410.24354	1227.70879	-0.1228	-5.0378E-05	-0.91241	-0.00037431	-1.0352	-0.00042469	410.2434328005391	33.351	0.60562	33.351	33.011	33.617	0					86	21	6	0	0	0	0.35961	1	6491	6491		10.899	3.0529	1	821500	+		13468	16405	7559	7559	17112	17112					0.1040447393395425
HQILKSSLRF	10	Unmodified	_HQILKSSLRF_					0	0	0			REV__ENSG00000147789|ENST00000532777|ZNF7	REV__ENSG00000147789|ENST00000532777|ZNF7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	410.24354	1227.70879	0.09672	3.9679E-05	-1.2482	-0.00051205	-1.1514	-0.00047237	410.2431581667909	33.223	0.82665	33.279	32.758	33.585	0.055309	-0.014219	-0.0011058	NaN	10.899	84	29	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	924680	+		13469	16405	7559	7559							0.1040447393395425
HQIQTQSWL	9	Unmodified	_HQIQTQSWL_					0	0	0			REV__HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|39|1|sense	REV__HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|39|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.337646484375	2	570.793455	1139.57236	0.40895	0.00023342	-0.58885	-0.00033611	-0.1799	-0.00010269	570.7933519039761	29.73	0.47236	29.742	29.532	30.004	0.012266					28	15	3	0	0	0	0.25949	1	5435	5435		4.897	0.95262	1	120980	+		13470	22760	7560	7560	17113	17113					0.008153597034606719
HQKGGITFR	9	Unmodified	_HQKGGITFR_					0	0	0		ENST00000446425.2_1_2:24199858-24205795:+|nuORF	ENST00000446425.2_1_2:24199858-24205795:+|nuORF	ENST00000446425.2_1_2:24199858-24205795:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2797241210938	2	522.290882	1042.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.208	1	51.255	50.755	51.755	0.046574								0	0	0	0.22666	1	11932	11932		13.906	1.3745	1				13471	10596	7561	7561	17114	17114					0.047631006314986735
HQLENLSNFI	10	Unmodified	_HQLENLSNFI_					0	0	0		ENST00000443067.1_1_1:166765603-166766044:+|nuORF;nc|ENSG00000064666|Q99439-2|CNN2;ENSG00000064666|ENST00000263097|CNN2	ENST00000443067.1_1_1:166765603-166766044:+|nuORF	ENST00000443067.1_1_1:166765603-166766044:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.308837890625	2	607.811845	1213.60914	0.52694	0.00032028	-2.4348	-0.0014799	-1.9079	-0.0011596	607.8104234265791	72.722	0.26853	72.722	72.506	72.775	0					18	9	3	0	0	0	0.31143	1	18537	18537		17.113	3.2068	1	199770			13472	792	7562	7562	17115	17115					0.01087611529374044
HQLLVICVDIK	11	Unmodified	_HQLLVICVDIK_					0	0	0			REV__TNKS2|p.E1150Sfs*3|1|0.23|ENSG00000107854|chr10:91862946-91862946|G/-|frameshift_variant	REV__TNKS2|p.E1150Sfs*3|1|0.23|ENSG00000107854|chr10:91862946-91862946|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.8748779296875	2	640.873391	1279.73223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.889	1	95.889	95.389	96.389	0								0	0	0	0.38137	1	25606	25606		1.0715	0.5467	1		+		13473	14567	7563	7563	17116	17116					0.10355151656290218
HQLQNVQDFA	10	Unmodified	_HQLQNVQDFA_					0	0	0			REV__ENSG00000115993|ENST00000332624|TRAK2	REV__ENSG00000115993|ENST00000332624|TRAK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3306884765625	2	600.293819	1198.57309	0.382	0.00022931	1.2964	0.0007782	1.6784	0.0010075	600.2949098925656	41.353	0.32349	41.444	41.188	41.511	0.090248					15	11	2	0	0	0	0.26638	1	8849	8849		24.021	1.2843	1	277610	+		13474	14905	7564	7564	17117	17117					-0.018258456474768536
HQLVSCKKDLL	11	Unmodified	_HQLVSCKKDLL_					0	0	0		nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957|ENST00000382108|SPATA13	nc|ENSG00000228741|Q96N96-5|SPATA13	nc|ENSG00000228741|Q96N96-5|SPATA13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.361083984375	2	642.360647	1282.70674	0.24569	0.00015782	0.7651	0.00049147	1.0108	0.00064929	642.3612934257188	105.99	0.27244	105.99	105.9	106.18	-0.0027847					65	40	3	0	0	0	0.44828	1	28046	28046		4.897	2.1618	1	111520			13475	7336	7565	7565	17118	17118					0.07669677133867481
HQMEQYYHLV	10	Unmodified	_HQMEQYYHLV_					0	0	0		CON__Q9TT36;ENSG00000123561|ENST00000372563|SERPINA7	CON__Q9TT36	CON__Q9TT36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.57037353515625	3	449.876529	1346.60776	-0.069551	-3.1289E-05	-2.6302	-0.0011833	-2.6998	-0.0012146	449.87500008885735	31.423	0.38639	31.466	31.156	31.543	0.042366					17	13	2	0	0	0	0.32051	1	5818	5818		1.9064	0	1	107740		+	13476	239	7566	7566	17119	17119					-0.051683458310435526
HQQHWKHLDE	10	Unmodified	_HQQHWKHLDE_					0	0	0		FPGS|p.N475K|1|0.35|ENSG00000136877|chr9:127813265-127813265|C/G|missense_variant	FPGS|p.N475K|1|0.35|ENSG00000136877|chr9:127813265-127813265|C/G|missense_variant	FPGS|p.N475K|1|0.35|ENSG00000136877|chr9:127813265-127813265|C/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.88018798828125	3	453.218054	1356.63233	0.22731	0.00010302	3.5349	0.0016021	3.7622	0.0017051	453.21942973390094	38.568	0.13411	38.659	38.568	38.702	0.090881					6	4	2	0	0	0	0.31911	1	8028	8028		6.6304	0.76223	1	35220			13477	12344	7567	7567	17120	17120					-0.0317194963329257
HQQKAVFFYVY	11	Unmodified	_HQQKAVFFYVY_					0	0	0		ENST00000506817.1_1_5:95068068-95068170:+|nuORF	ENST00000506817.1_1_5:95068068-95068170:+|nuORF	ENST00000506817.1_1_5:95068068-95068170:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.2928771972656	3	477.24695	1428.71902	-0.1618	-7.7217E-05	-0.037076	-1.7695E-05	-0.19887	-9.4912E-05	477.24697782877405	38.697	1.1339	38.697	38.239	39.373	0					92	40	3	0	0	0	0.33326	1	8283	8283		1.4551	0	1	366910			13478	11329	7568	7568	17121	17121					0.021810368685692083
HQQRLCTFS	9	Unmodified	_HQQRLCTFS_					0	0	0		ENST00000521249.1_1_14:102697414-102697822:-|nuORF	ENST00000521249.1_1_14:102697414-102697822:-|nuORF	ENST00000521249.1_1_14:102697414-102697822:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.2704467773438	2	560.271832	1118.52911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.827	1	49.872	49.372	50.372	0.044891								0	0	0	0.23367	1	11508	11508		11.64	0	1				13479	11490	7569	7569	17122	17122					-0.025411533454644086
HQQTLLVPSED	11	Unmodified	_HQQTLLVPSED_					0	0	0		nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3187866210938	2	633.819867	1265.62518	0.019241	1.2195E-05	1.5808	0.0010019	1.6	0.0010141	633.8219247936547	61.763	1.1424	61.86	61.429	62.572	0.096985					84	41	3	0	0	0	0.39802	1	15123	15123		11.495	0	1	860620			13480	5243	7570	7570	17123	17123					0.0029927297564427136
HQRFPMAF	8	Unmodified	_HQRFPMAF_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2554321289062	2	517.255454	1032.49636	0.62622	0.00032392	0.80452	0.00041614	1.4307	0.00074006	517.2555540729272	47.914	1.256	47.914	47.38	48.636	0					81	44	3	0	0	0	0.42446	1	10959	10959		14.582	3.4672	1	3260800	+		13481	16745	7571	7571	17124	17124					-0.018593156776432807
HQRFPMAF	8	Unmodified	_HQRFPMAF_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.255859375	2	517.255454	1032.49636	0.68913	0.00035645	0.67571	0.00034952	1.3648	0.00070597	517.2555147538036	47.85	1.0345	47.897	47.539	48.573	0.047523					75	38	3	0	0	0	0.42446	1	10948	10948		14.582	2.9414	1	3350800	+		13482	16745	7571	7571	17125	17125					-0.018593156776432807
HQRFPMAF	8	Unmodified	_HQRFPMAF_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2560424804688	2	517.255454	1032.49636	0.48259	0.00024962	0.75457	0.0003903	1.2372	0.00063992	517.2556114855265	47.844	0.94976	47.888	47.48	48.43	0.04332					60	35	2	0	0	0	0.42446	1	10919	10919		14.582	4.3983	1	3533400	+		13483	16745	7571	7571	17126	17126					-0.018593156776432807
HQRLQRRLRGR	11	Unmodified	_HQRLQRRLRGR_					0	0	0			REV__ENST00000515535.1_1_19:58596465-58596771:+|nuORF	REV__ENST00000515535.1_1_19:58596465-58596771:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.63458251953125	3	492.634536	1474.88178	0.31175	0.00015358	0.017755	8.7468E-06	0.32951	0.00016233	492.6344922318789	93.811	0.753	93.897	93.722	94.475	0.08667					170	59	5	0	0	0	0.48212	3	24972	24972;25013;25056		0.45452	0	1	3030400	+		13484	21844	7572	7572	17127;17128;17129	17127					0.1633327783376899
HQRLQRRLRGR	11	Unmodified	_HQRLQRRLRGR_					0	0	0			REV__ENST00000515535.1_1_19:58596465-58596771:+|nuORF	REV__ENST00000515535.1_1_19:58596465-58596771:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.6346740722656	3	492.634536	1474.88178	0.29527	0.00014546	0.12451	6.1338E-05	0.41978	0.0002068	492.63454926445826	94.103	1.3083	94.189	94.127	95.435	0.08667					265	116	3	0	0	0	0.48212	4	25098	25098;25137;25178;25215		0.45452	0	1	2284600	+		13485	21844	7572	7572	17130;17131;17132;17133	17130					0.1633327783376899
HQRLQRRLRGR	11	Unmodified	_HQRLQRRLRGR_					0	0	0			REV__ENST00000515535.1_1_19:58596465-58596771:+|nuORF	REV__ENST00000515535.1_1_19:58596465-58596771:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.6346740722656	3	492.634536	1474.88178	0.31175	0.00015358	0.017755	8.7468E-06	0.32951	0.00016233	492.6344922318789	93.811	0.753	93.897	93.722	94.475	0.08667					170	59	5	0	0	0	0.3333	1	25098	25098		0.45452	0	1	3030400	+		13486	21844	7572	7572	17134	17134					0.1633327783376899
HQRMPERKQ	9	Unmodified	_HQRMPERKQ_					0	0	0			REV__L1MA4A_dup2646|chr7:55461716-55462655:-|1.5252375065868096|0.4304615177296836|1.83|542.0|14|2|sense	REV__L1MA4A_dup2646|chr7:55461716-55462655:-|1.5252375065868096|0.4304615177296836|1.83|542.0|14|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.2911376953125	2	605.317106	1208.61966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.336	1	97.336	96.836	97.836	0								0	0	0	0.264	1	26028	26028		1.8442	0	1		+		13487	22785	7573	7573	17135	17135					0.023693157028219503
HQRRQRRGRLL	11	Unmodified	_HQRRQRRGRLL_					0	0	0			REV__ENST00000268296.8_1_16:31373430-31374502:+|nuORF	REV__ENST00000268296.8_1_16:31373430-31374502:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.6346435546875	3	492.634536	1474.88178	0.24922	0.00012277	-0.11256	-5.5452E-05	0.13666	6.7321E-05	492.6344663430911	93.757	2.7994	93.757	92.584	95.383	0					591	241	4	0	0	0	0.48486	2	24738	24738;24753		0.094841	0.094841	1	1928400	+		13488	19666	7574	7574	17136;17137	17136					0.1633327783376899
HQRRQRRGRLL	11	Unmodified	_HQRRQRRGRLL_					0	0	0			REV__ENST00000268296.8_1_16:31373430-31374502:+|nuORF	REV__ENST00000268296.8_1_16:31373430-31374502:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.6346435546875	3	492.634536	1474.88178	0.32952	0.00016233	-0.14364	-7.076E-05	0.18589	9.1575E-05	492.6344416634122	93.398	1.4559	93.485	92.309	93.765	0.08667					362	120	4	0	0	0	0.48486	2	24664	24664;24704		0.094841	0.094841	1	3583500	+		13489	19666	7574	7574	17138;17139	17138					0.1633327783376899
HQSPPKRVSSL	11	Unmodified	_HQSPPKRVSSL_					0	0	0		ENSG00000120709|ENST00000239906|FAM53C	ENSG00000120709|ENST00000239906|FAM53C	ENSG00000120709|ENST00000239906|FAM53C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.5665588378906	3	412.566683	1234.67822	0.07846	3.237E-05	-0.31104	-0.00012832	-0.23258	-9.5954E-05	412.56651990538194	27.271	1.161	27.25	26.506	27.667	-0.021412					115	40	4	0	0	0	0.38248	1	4550	4550		13.535	13.535	1	651580			13490	2961	7575	7575	17140	17140					0.0702669554896147
HQVLEKKSGP	10	Unmodified	_HQVLEKKSGP_					0	0	0		ENST00000564176.5_1_16:31483548-31484082:+|nuORF	ENST00000564176.5_1_16:31483548-31484082:+|nuORF	ENST00000564176.5_1_16:31483548-31484082:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3289794921875	2	561.81693	1121.61931	0.41918	0.0002355	-1.01	-0.00056742	-0.5908	-0.00033192	561.816688159977	38.075	0.90908	38.166	37.849	38.758	0.090881					76	32	4	0	0	0	0.33594	1	8010	8010		15.248	1.3424	1	577820			13491	11942	7576	7576	17141	17141					0.06336219254603748
HQVTVLLSLC	10	Unmodified	_HQVTVLLSLC_					0	0	0			REV__nc|ENSG00000145103|Q86SU0-4|ILDR1	REV__nc|ENSG00000145103|Q86SU0-4|ILDR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2921752929688	2	556.810259	1111.60597	0.31971	0.00017802	-4.1917	-0.002334	-3.872	-0.002156	556.8071234040784	45.985	0.48524	45.985	45.917	46.402	0					21	17	2	0	0	0	0.30079	1	10415	10415		20.454	1.1966	1	179880	+		13492	16277	7577	7577	17142	17142					0.0546264515103303
HQWFDSQY	8	Unmodified	_HQWFDSQY_					0	0	0			REV__nc|ENSG00000290292|Q8IX15|HOMEZ	REV__nc|ENSG00000290292|Q8IX15|HOMEZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.330322265625	2	555.735606	1109.45666	0.19067	0.00010596	-0.80119	-0.00044525	-0.61052	-0.00033929	555.7351462621992	23.545	0.47104	23.473	23.285	23.756	-0.072559					21	16	2	0	0	0	0.34434	1	3456	3456		0.79363	0	1	37004	+		13493	23247	7578	7578	17143	17143					-0.09369164147369702
HRAFRHLHH	9	Unmodified	_HRAFRHLHH_					0	0	0		CON__ENSEMBL:ENSBTAP00000023402	CON__ENSEMBL:ENSBTAP00000023402	CON__ENSEMBL:ENSBTAP00000023402	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.57025146484375	3	404.219952	1209.63803	0.030841	1.2466E-05	0.97913	0.00039578	1.01	0.00040825	404.2205341852855	20.81	0.45788	20.81	20.594	21.052	0					17	15	2	0	0	0	0.259	1	2610	2610		5.2969	2.2246	1	26210		+	13494	201	7579	7579	17144	17144					0.0415923845969246
HRAFSISF	8	Unmodified	_HRAFSISF_					0	0	0			REV__ENSG00000145725|ENST00000358359|PPIP5K2	REV__ENSG00000145725|ENST00000358359|PPIP5K2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.3066101074219	2	482.753601	963.49265	0.43733	0.00021112	1.7534	0.00084647	2.1908	0.0010576	482.75292496126116	79.083	0.71873	79.083	78.486	79.205	0					44	29	2	0	0	0	0.34092	1	20429	20429		8.5933	0	1	167370	+		13495	16302	7580	7580	17145	17145					0.009443378201467567
HRALPSVP	8	Unmodified	_HRALPSVP_					0	0	0			REV__nc|ENSG00000166436|O15016-2|TRIM66	REV__nc|ENSG00000166436|O15016-2|TRIM66	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.7464599609375	2	438.756144	875.497735	0.29709	0.00013035	-1.672	-0.00073361	-1.3749	-0.00060326	438.75391588042316	36.838	0.337	36.838	36.787	37.124	0					15	11	2	0	0	0	0.42758	1	7553	7553		13.508	1.8676	1	100500	+		13496	17321	7581	7581	17146	17146					0.05500641682749574
HRALPSVP	8	Unmodified	_HRALPSVP_					0	0	0			REV__nc|ENSG00000166436|O15016-2|TRIM66	REV__nc|ENSG00000166436|O15016-2|TRIM66	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.7468566894531	2	438.756144	875.497735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.452	1	36.452	35.952	36.952	0								0	0	0	0.33941	1	7407	7407		19.439	5.9311	1		+		13497	17321	7581	7581	17147	17147					0.05500641682749574
HRALPSVP	8	Unmodified	_HRALPSVP_					0	0	0			REV__nc|ENSG00000166436|O15016-2|TRIM66	REV__nc|ENSG00000166436|O15016-2|TRIM66	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.746826171875	2	438.756144	875.497735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.372	1	36.455	35.955	36.955	0.082355								0	0	0	0.33941	1	7383	7383		19.439	2.3524	1		+		13498	17321	7581	7581	17148	17148					0.05500641682749574
HRALQSSY	8	Unmodified	_HRALQSSY_					0	0	0			REV__ENSG00000169981|ENST00000396056|ZNF35	REV__ENSG00000169981|ENST00000396056|ZNF35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2467956542969	2	481.246141	960.477728	-0.20865	-0.00010041	-0.15278	-7.3525E-05	-0.36143	-0.00017394	481.2461707059327	104.18	0.68884	104.18	103.87	104.56	0					166	91	3	0	0	0	0.41758	2	27601	27601;27649		16.942	5.302	1	591280	+		13499	17556	7582	7582	17149;17150	17149					-0.004091540478725619
HRALQSSY	8	Unmodified	_HRALQSSY_					0	0	0			REV__ENSG00000169981|ENST00000396056|ZNF35	REV__ENSG00000169981|ENST00000396056|ZNF35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2462158203125	2	481.246141	960.477728	0.02612	1.257E-05	0.24049	0.00011573	0.26661	0.0001283	481.2461751180837	104.02	0.62807	104.03	103.91	104.53	0.0082626					145	86	2	0	0	0	0.41758	1	27649	27649		16.942	5.302	1	772420	+		13500	17556	7582	7582	17151	17151					-0.004091540478725619
HRALQSSY	8	Unmodified	_HRALQSSY_					0	0	0			REV__ENSG00000169981|ENST00000396056|ZNF35	REV__ENSG00000169981|ENST00000396056|ZNF35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2462158203125	2	481.246141	960.477728	0.21642	0.00010415	-0.048653	-2.3414E-05	0.16777	8.0736E-05	481.2461564228445	104.22	0.66076	104.22	103.93	104.59	0.0011444					194	87	3	0	0	0	0.41758	5	27647	27647;27677;27697;27749;27776		16.942	5.302	1	899990	+		13501	17556	7582	7582	17152;17153;17154;17155;17156	17152					-0.004091540478725619
HRALQSSY	8	Unmodified	_HRALQSSY_					0	0	0			REV__ENSG00000169981|ENST00000396056|ZNF35	REV__ENSG00000169981|ENST00000396056|ZNF35	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	481.246141	960.477728	0.21642	0.00010415	-0.048653	-2.3414E-05	0.16777	8.0736E-05	481.2461564228445	104.22	0.66076	104.22	103.93	104.59	0.0011444	0.077158	-5.7479E-05	NaN	16.942	194	87	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	899990	+		13502	17556	7582	7582							-0.004091540478725619
HRARTLLP	8	Unmodified	_HRARTLLP_					0	0	0			REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7346496582031	2	482.295968	962.577383	0.78869	0.00038038	1.0749	0.00051844	1.8636	0.00089882	482.29638778834584	77.952	1.0812	77.921	77.317	78.398	-0.030434					62	39	2	0	0	0	0.34337	1	20265	20265		5.2307	5.2307	1	312280	+		13503	15448	7583	7583	17157	17157					0.09459708356746432
HRARTLLP	8	Unmodified	_HRARTLLP_					0	0	0			REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	482.295968	962.577383	0.62129	0.00029965	1.3945	0.00067254	2.0158	0.00097219	482.2965008605114	77.896	0.8826	77.896	77.366	78.249	0	0.014309	0.00022198	NaN	2.3027	57	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279720	+		13504	15448	7583	7583							0.09459708356746432
HRARTLLP	8	Unmodified	_HRARTLLP_					0	0	0			REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	482.295968	962.577383	0.60209	0.00029038	0.8655	0.00041743	1.4676	0.00070781	482.29646100986173	77.772	0.79713	77.828	77.51	78.307	0.05542	-0.053973	-0.00028825	NaN	2.3027	70	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332610	+		13505	15448	7583	7583							0.09459708356746432
HRATRKIGI	9	Unmodified	_HRATRKIGI_					0	0	0		ENSG00000155269|ENST00000382487|GPR78	ENSG00000155269|ENST00000382487|GPR78	ENSG00000155269|ENST00000382487|GPR78	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.311767578125	2	526.327799	1050.64105	0.18075	9.5134E-05	-0.3144	-0.00016548	-0.13365	-7.0345E-05	526.3276086779931	13.596	0.33972	13.596	13.427	13.767	0					16	11	2	0	0	0	0.3208	1	483	483		5.7319	1.4026	1	53971			13506	5164	7584	7584	17158	17158					0.11775068793826904
HRATRKIGI	9	Unmodified	_HRATRKIGI_					0	0	0		ENSG00000155269|ENST00000382487|GPR78	ENSG00000155269|ENST00000382487|GPR78	ENSG00000155269|ENST00000382487|GPR78	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3125	2	526.327799	1050.64105	0.082176	4.3251E-05	-0.52168	-0.00027458	-0.43951	-0.00023132	526.3276187022235	13.686	0.25282	13.587	13.466	13.718	-0.099291					19	8	3	0	0	0	0.3208	1	506	506		5.7319	1.4026	1	54227			13507	5164	7584	7584	17159	17159					0.11775068793826904
HRATRKIGI	9	Unmodified	_HRATRKIGI_					0	0	0		ENSG00000155269|ENST00000382487|GPR78	ENSG00000155269|ENST00000382487|GPR78	ENSG00000155269|ENST00000382487|GPR78	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3123168945312	2	526.327799	1050.64105	0.13393	7.0493E-05	-0.45022	-0.00023696	-0.31628	-0.00016647	526.3276675826968	13.712	0.25342	13.646	13.521	13.774	-0.066068					18	8	3	0	0	0	0.26612	1	501	501		13.906	13.906	1	68815			13508	5164	7584	7584	17160	17160					0.11775068793826904
HRATRKIGI	9	Unmodified	_HRATRKIGI_					0	0	0		ENSG00000155269|ENST00000382487|GPR78	ENSG00000155269|ENST00000382487|GPR78	ENSG00000155269|ENST00000382487|GPR78	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	526.327799	1050.64105	0.082176	4.3251E-05	-0.52168	-0.00027458	-0.43951	-0.00023132	526.3276187022235	13.686	0.25282	13.587	13.466	13.718	-0.099291	-0.0228	-0.00010415	NaN	13.906	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54227			13509	5164	7584	7584							0.11775068793826904
HRDEGRKT	8	Unmodified	_HRDEGRKT_					0	0	0		nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3	nc|ENSG00000177679|A6NNA2|SRRM3	nc|ENSG00000177679|A6NNA2|SRRM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.23974609375	2	499.759946	997.50534	0.25595	0.00012791	-3.1124	-0.0015555	-2.8565	-0.0014276	499.7583989735754	16.43	0.3917	16.43	16.267	16.659	0					21	13	2	0	0	0	0.34367	1	1323	1323		4.3292	0.38484	1	29703			13510	7009	7585	7585	17161	17161					0.006487492123710581
HRFDLEQS	8	Unmodified	_HRFDLEQS_					0	0	0			REV__nc|ENSG00000130810|Q9NQ55-2|PPAN	REV__nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2490234375	2	516.24888	1030.48321	0.046406	2.3957E-05	-0.24123	-0.00012454	-0.19483	-0.00010058	516.2487512246782	14.785	0.6992	14.785	14.649	15.348	0					56	24	3	0	0	0	0.46092	1	861	861		2.0598	0.40713	1	781360	+		13511	15479	7586	7586	17162	17162					-0.030814752560672787
HRFHGRWKYEC	11	Unmodified	_HRFHGRWKYEC_					0	0	0		ENST00000406961.5_1_2:24974995-24981018:+|nuORF	ENST00000406961.5_1_2:24974995-24981018:+|nuORF	ENST00000406961.5_1_2:24974995-24981018:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7744140625	3	506.910567	1517.70987	0.2402	0.00012176	0.41053	0.0002081	0.65073	0.00032986	506.9107786582228	17.809	0.76191	17.809	17.537	18.299	0					82	25	5	0	0	0	0.33348	1	1822	1822		0.40827	0.40827	1	636290			13512	10227	7587	7587	17163	17163					-0.028276349687303082
HRFHGRWKYEC	11	Unmodified	_HRFHGRWKYEC_					0	0	0		ENST00000406961.5_1_2:24974995-24981018:+|nuORF	ENST00000406961.5_1_2:24974995-24981018:+|nuORF	ENST00000406961.5_1_2:24974995-24981018:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	506.910567	1517.70987	0.10054	5.0963E-05	0.5475	0.00027753	0.64803	0.0003285	506.91084930396283	18.039	0.75104	17.921	17.663	18.414	-0.11739	0.024085	7.8931E-05	NaN	0.40827	80	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	764140			13513	10227	7587	7587							-0.028276349687303082
HRFHGRWKYEC	11	Unmodified	_HRFHGRWKYEC_					0	0	0		ENST00000406961.5_1_2:24974995-24981018:+|nuORF	ENST00000406961.5_1_2:24974995-24981018:+|nuORF	ENST00000406961.5_1_2:24974995-24981018:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	506.910567	1517.70987	0.10661	5.4041E-05	0.52081	0.00026401	0.62742	0.00031805	506.9108188242567	18.02	0.91837	17.961	17.651	18.57	-0.058716	0.064238	3.8351E-05	NaN	0.40827	99	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	712700			13514	10227	7587	7587							-0.028276349687303082
HRFKFALTTT	10	Unmodified	_HRFKFALTTT_					0	0	0			REV__nc|ENSG00000100804|P28074-2|PSMB5	REV__nc|ENSG00000100804|P28074-2|PSMB5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.35595703125	2	611.340572	1220.66659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.015	1	85.015	84.515	85.515	0								0	0	0	0.36441	1	22312	22312		8.7454	2.115	1		+		13515	14231	7588	7588	17164	17164					0.06508498525590767
HRFKFALTTT	10	Unmodified	_HRFKFALTTT_					0	0	0			REV__nc|ENSG00000100804|P28074-2|PSMB5	REV__nc|ENSG00000100804|P28074-2|PSMB5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.35595703125	2	611.340572	1220.66659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.99	1	84.977	84.477	85.477	-0.01284								0	0	0	0.36441	1	22291	22291		8.7454	2.115	1		+		13516	14231	7588	7588	17165	17165					0.06508498525590767
HRFLKRRGVN	10	Unmodified	_HRFLKRRGVN_					0	0	0		ENST00000409790.5_2_16:11275662-11275731:+|nuORF	ENST00000409790.5_2_16:11275662-11275731:+|nuORF	ENST00000409790.5_2_16:11275662-11275731:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.9013671875	2	641.883804	1281.75306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.55	1	104.55	104.05	105.05	0								0	0	0	0.37739	1	27752	27752		3.2813	0.78282	1				13517	10257	7589	7589	17166	17166					0.12344922870829578
HRGFVPEKN	9	Unmodified	_HRGFVPEKN_					0	0	0		ENSG00000054118|ENST00000354618|THRAP3	ENSG00000054118|ENST00000354618|THRAP3	ENSG00000054118|ENST00000354618|THRAP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.278076171875	2	542.28834	1082.56213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.269	1	56.25	55.75	56.75	-0.019081								0	0	0	0.21353	1	13490	13490		18.146	1.2041	1				13518	683	7590	7590	17167	17167					0.024147967689032157
HRHALRLLIH	10	Unmodified	_HRHALRLLIH_					0	0	0		nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	nc|ENSG00000188986|Q8WX92|NELFB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3697509765625	2	633.388722	1264.76289	-0.060202	-3.8131E-05	-1.2505	-0.00079204	-1.3107	-0.00083018	633.8903085259533	104.58	0.56749	104.58	104.34	104.91	0					120	79	2	0	0	0	0.41085	1	27826	27826		1.4819	1.0812	1	156630			13519	7790	7591	7591	17168	17168					0.14110110876208637
HRHFVIRRG	9	Unmodified	_HRHFVIRRG_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000479169.5_1_2:242177863-242181895:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3434448242188	2	589.344315	1176.67408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.37	1	116.35	115.85	116.85	-0.022781								0	0	0	0.264	1	30148	30148		1.8442	0.51471	1				13520	2669	7592	7592	17169	17169					0.09280695636562086
HRHKPITL	8	Unmodified	_HRHKPITL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2913818359375	2	501.303793	1000.59303	0.22669	0.00011364	-1.0035	-0.00050307	-0.77684	-0.00038943	501.3033098767579	75.475	0.56126	75.475	75.178	75.739	0					25	19	2	0	0	0	0.32038	3	19425	19321;19425;19471		28.487	5.3467	1	169280	+		13521	14053	7593	7593	17170;17171;17172	17171					0.09275994873792115
HRHKPITL	8	Unmodified	_HRHKPITL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.788330078125	2	501.303793	1000.59303	0.48215	0.0002417	-1.3434	-0.00067346	-0.86126	-0.00043175	501.30270255702396	82.411	0.83643	82.411	82.138	82.975	0					47	30	2	0	0	0	0.34247	1	21620	21620		8.5933	0	1	119200	+		13522	14053	7593	7593	17173	17173					0.09275994873792115
HRHKPITL	8	Unmodified	_HRHKPITL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.23040771484375	2	501.303793	1000.59303	0.43832	0.00021973	-0.85754	-0.00042989	-0.41923	-0.00021016	501.30355731747346	89.523	0.61426	89.523	89.369	89.983	0					66	45	2	0	0	0	0.34294	1	23647	23647		7.2892	1.0834	1	68825	+		13523	14053	7593	7593	17174	17174					0.09275994873792115
HRHKPITL	8	Unmodified	_HRHKPITL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2944641113281	2	501.303793	1000.59303	0.34259	0.00017174	-1.4523	-0.00072803	-1.1097	-0.00055628	501.3036436553221	71.141	2.7851	71.202	70.827	73.612	0.060783					326	101	6	0	0	0	0.27124	1	18793	18793		34.102	7.8343	1	104580000	+		13524	14053	7593	7593	17175	17175					0.09275994873792115
HRHKPITL	8	Unmodified	_HRHKPITL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2908630371094	2	501.303793	1000.59303	0.38087	0.00019093	-1.1025	-0.00055269	-0.72164	-0.00036176	501.30315699528825	75.393	0.62503	75.445	75.076	75.701	0.052368					33	22	2	0	0	0	0.42077	1	19416	19416		15.847	1.9411	1	190270	+		13525	14053	7593	7593	17176	17176					0.09275994873792115
HRHKPITL	8	Unmodified	_HRHKPITL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2908935546875	2	501.303793	1000.59303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.91	1	78.968	78.468	79.468	0.058151								0	0	0	0.33717	1	20428	20428		20.454	1.1966	1		+		13526	14053	7593	7593	17177	17177					0.09275994873792115
HRHKPITL	8	Unmodified	_HRHKPITL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.290771484375	2	501.303793	1000.59303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.081	1	79.143	78.643	79.643	0.061417								0	0	0	0.31323	1	20479	20479		26.884	0	1		+		13527	14053	7593	7593	17178	17178					0.09275994873792115
HRHKPITL	8	Unmodified	_HRHKPITL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2906188964844	2	501.303793	1000.59303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.688	1	79.749	79.249	80.249	0.061417								0	0	0	0.26621	1	20665	20665		34.102	1.797	1		+		13528	14053	7593	7593	17179	17179					0.09275994873792115
HRHKPITL	8	Unmodified	_HRHKPITL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.287109375	2	501.303793	1000.59303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.518	1	80.583	80.083	81.083	0.065094								0	0	0	0.34229	1	20921	20921		18.135	1.1927	1		+		13529	14053	7593	7593	17180	17180					0.09275994873792115
HRHKPITL	8	Unmodified	_HRHKPITL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.25830078125	2	501.303793	1000.59303	0.14229	7.133E-05	-0.73415	-0.00036803	-0.59186	-0.0002967	501.30332089804415	80.876	0.67403	80.942	80.603	81.277	0.065094					47	30	2	0	0	0	0.31088	1	21056	21056		28.487	0	1	96561	+		13530	14053	7593	7593	17181	17181					0.09275994873792115
HRHKPITL	8	Unmodified	_HRHKPITL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.291259765625	2	501.303793	1000.59303	0.57454	0.00028802	-0.86035	-0.0004313	-0.2858	-0.00014327	501.3033491415633	74.994	1.0794	74.962	74.557	75.637	-0.031487					55	39	2	0	0	0	0.33441	3	19341	19229;19341;19390		26.884	3.0939	1	164330	+		13531	14053	7593	7593	17182;17183;17184	17183					0.09275994873792115
HRHKPITL	8	Unmodified	_HRHKPITL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7684326171875	2	501.303793	1000.59303	0.55028	0.00027586	-0.68759	-0.00034469	-0.13731	-6.8836E-05	501.30334607359447	85.126	0.83353	85.113	84.862	85.695	-0.01284					46	32	2	0	0	0	0.31088	1	22488	22488		28.487	3.0875	1	122260	+		13532	14053	7593	7593	17185	17185					0.09275994873792115
HRHKPITL	8	Unmodified	_HRHKPITL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2590026855469	2	501.303793	1000.59303	0.34144	0.00017116	-0.77787	-0.00038995	-0.43644	-0.00021879	501.30338693493263	81.066	0.42239	81.04	80.901	81.324	-0.026817					26	17	2	0	0	0	0.33293	1	21078	21078		20.454	6.5476	1	102290	+		13533	14053	7593	7593	17186	17186					0.09275994873792115
HRHKPITL	8	Unmodified	_HRHKPITL_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	501.303793	1000.59303	0.40999	0.00020553	-0.64712	-0.0003244	-0.23713	-0.00011887	501.3036200561719	89.636	0.52718	89.726	89.426	89.954	0.090569	0.10161	0.00011192	NaN	7.2892	54	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105390	+		13534	14053	7593	7593							0.09275994873792115
HRHRRSREENR	11	Unmodified	_HRHRRSREENR_					0	0	0			REV__ENST00000264235.12_2_3:119812650-119812956:-|nuORF	REV__ENST00000264235.12_2_3:119812650-119812956:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2788391113281	3	511.605305	1531.79409	0.30203	0.00015452	-1.508	-0.00077151	-1.206	-0.00061699	511.60458778916455	43.402	0.48128	43.402	43.149	43.63	0					26	17	2	0	0	0	0.33303	1	9525	9525		1.1098	0.65524	1	258500	+		13535	19636	7594	7594	17187	17187					0.04946032172347259
HRHRSWVSPG	10	Unmodified	_HRHRSWVSPG_					0	0	0			REV__ENST00000366794.9_1_1:226573212-226573296:-|nuORF	REV__ENST00000366794.9_1_1:226573212-226573296:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.8789367675781	3	406.879484	1217.61662	-0.37276	-0.00015167	-0.63146	-0.00025693	-1.0042	-0.0004086	406.8791531315489	13.964	0.82301	13.898	13.632	14.455	-0.066068					77	28	5	0	0	0	0.34535	1	578	578		13.519	5.5733	1	752600	+		13536	20300	7595	7595	17188	17188					0.016518086403266352
HRILLLVHII	10	Unmodified	_HRILLLVHII_					0	0	0			REV__ENST00000348564.10_2_1:198676009-198676063:+|nuORF	REV__ENST00000348564.10_2_1:198676009-198676063:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.60797119140625	3	409.608042	1225.8023	0.062039	2.5412E-05	-0.30272	-0.000124	-0.24068	-9.8583E-05	409.6078934601105	56.935	1.1545	56.935	56.423	57.578	0					96	42	3	0	0	0	0.3994	1	13691	13691		3.5871	0	1	305690	+		13537	20159	7596	7596	17189	17189					0.1984281810707671
HRILLLVHII	10	Unmodified	_HRILLLVHII_					0	0	0			REV__ENST00000348564.10_2_1:198676009-198676063:+|nuORF	REV__ENST00000348564.10_2_1:198676009-198676063:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.9222412109375	3	409.608042	1225.8023	-0.038961	-1.5959E-05	-0.69465	-0.00028453	-0.73361	-0.00030049	409.60772838450504	95.953	0.10669	96.03	95.962	96.069	0.077408					11	7	2	0	0	0	0.31911	1	25621	25621		3.8763	1.033	1	58773	+		13538	20159	7596	7596	17190	17190					0.1984281810707671
HRILLLVHII	10	Unmodified	_HRILLLVHII_					0	0	0			REV__ENST00000348564.10_2_1:198676009-198676063:+|nuORF	REV__ENST00000348564.10_2_1:198676009-198676063:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.6077880859375	3	409.608042	1225.8023	0.43081	0.00017646	-0.74215	-0.00030399	-0.31134	-0.00012753	409.6077176309588	56.112	0.78946	56.093	55.508	56.297	-0.019077					58	28	3	0	0	0	0.38522	1	13351	13351		6.1918	6.1918	1	889790	+		13539	20159	7596	7596	17191	17191					0.1984281810707671
HRILLLVHII	10	Unmodified	_HRILLLVHII_					0	0	0			REV__ENST00000348564.10_2_1:198676009-198676063:+|nuORF	REV__ENST00000348564.10_2_1:198676009-198676063:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5607604980469	3	409.608042	1225.8023	-0.03973	-1.6274E-05	-0.96725	-0.00039619	-1.007	-0.00041247	409.6076405792474	60.253	0.40054	60.241	60.085	60.485	-0.011486					22	14	2	0	0	0	0.32068	1	14757	14757		3.5871	0	1	210890	+		13540	20159	7596	7596	17192	17192					0.1984281810707671
HRILLLVHII	10	Unmodified	_HRILLLVHII_					0	0	0			REV__ENST00000348564.10_2_1:198676009-198676063:+|nuORF	REV__ENST00000348564.10_2_1:198676009-198676063:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	409.608042	1225.8023	0.45752	0.00018741	-0.50193	-0.0002056	-0.044411	-1.8191E-05	409.6077901141926	56.252	0.39744	56.252	56.101	56.499	0	0.1218	0.00019625	NaN	6.1918	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280270	+		13541	20159	7596	7596							0.1984281810707671
HRILLLVHII	10	Unmodified	_HRILLLVHII_					0	0	0			REV__ENST00000348564.10_2_1:198676009-198676063:+|nuORF	REV__ENST00000348564.10_2_1:198676009-198676063:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	409.608042	1225.8023	0.062039	2.5412E-05	-0.30272	-0.000124	-0.24068	-9.8583E-05	409.6078934601105	56.935	1.1545	56.935	56.423	57.578	0	0	0	NaN	3.5871	96	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305690	+		13542	20159	7596	7596							0.1984281810707671
HRILLLVHII	10	Unmodified	_HRILLLVHII_					0	0	0			REV__ENST00000348564.10_2_1:198676009-198676063:+|nuORF	REV__ENST00000348564.10_2_1:198676009-198676063:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	409.608042	1225.8023	0.43081	0.00017646	-0.74215	-0.00030399	-0.31134	-0.00012753	409.6077176309588	56.112	0.78946	56.093	55.508	56.297	-0.019077	-0.037631	-9.8932E-05	NaN	6.1918	58	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	889790	+		13543	20159	7596	7596							0.1984281810707671
HRIRKQSL	8	Unmodified	_HRIRKQSL_					0	0	0		ENST00000462774.1_1_1:157739644-157746863:-|nuORF;ENSG00000132704|ENST00000361516|FCRL2	ENST00000462774.1_1_1:157739644-157746863:-|nuORF	ENST00000462774.1_1_1:157739644-157746863:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.800048828125	2	519.319974	1036.6254	0.57572	0.00029898	-0.46429	-0.00024111	0.11143	5.7867E-05	519.3196149328544	74.856	0.79463	74.856	74.6	75.395	0					43	28	2	0	0	0	0.34353	1	19302	19302		0.52476	0.52476	1	187130			13544	3661	7597	7597	17193	17193					0.10854782276783226
HRIRQLGNGSL	11	Unmodified	_HRIRQLGNGSL_					0	0	0		HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;HMCN1|p.A5600Gfs*20|1|0.2|ENSG00000143341|chr1:186189767-186189768|-/G|frameshift_variant;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.92230224609375	3	417.57406	1249.70035	-0.36782	-0.00015359	2.7024	0.0011284	2.3345	0.00097484	417.90948548814026	39.632	0.2966	39.632	39.48	39.777	0					14	10	2	0	0	0	0.44351	1	8370	8370		5.5233	0.80737	1	65483			13545	4502	7598	7598	17194	17194					0.0854892001736971
HRKEFRNYKRI	11	Unmodified	_HRKEFRNYKRI_					0	0	0			REV__ENSG00000142534|ENST00000270625|RPS11	REV__ENSG00000142534|ENST00000270625|RPS11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2777709960938	3	516.295297	1545.86406	-0.11836	-6.111E-05	0.014896	7.691E-06	-0.10347	-5.3419E-05	516.2954405889991	14.053	0.73711	13.987	13.494	14.231	-0.066068					35	25	3	0	0	0	0.33351	1	542	542		0.094841	0	1	177800	+		13546	16123	7599	7599	17195	17195					0.11296517788241545
HRKEFRNYKRI	11	Unmodified	_HRKEFRNYKRI_					0	0	0			REV__ENSG00000142534|ENST00000270625|RPS11	REV__ENSG00000142534|ENST00000270625|RPS11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	516.295297	1545.86406	0.0244	1.2597E-05	-0.33039	-0.00017058	-0.30599	-0.00015798	516.2950124293676	13.958	0.29203	13.958	13.794	14.086	0	-0.015416	-0.0004007	NaN	0.094841	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171360	+		13547	16123	7599	7599							0.11296517788241545
HRLHLVVYS	9	Unmodified	_HRLHLVVYS_					0	0	0		ENSG00000184574|ENST00000329858|LPAR5	ENSG00000184574|ENST00000329858|LPAR5	ENSG00000184574|ENST00000329858|LPAR5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3434448242188	2	562.322183	1122.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.66	1	115.68	115.18	116.18	0.018738								0	0	0	0.26334	1	30036	30036		2.0598	0	1				13548	7462	7600	7600	17196	17196					0.07340246699732234
HRLHPPVLR	9	Unmodified	_HRLHPPVLR_					0	0	0		ENST00000320895.9_1_5:1344528-1345152:-|nuORF	ENST00000320895.9_1_5:1344528-1345152:-|nuORF	ENST00000320895.9_1_5:1344528-1345152:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8453979492188	2	562.843616	1123.67268	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.77	1	111.76	111.26	112.26	-0.015625								0	0	0	0.26334	1	29077	29077		2.0598	1.3694	1				13549	9378	7601	7601	17197	17197					0.11579061547786296
HRLLKAMG	8	Unmodified	_HRLLKAMG_					0	0	0		ENST00000487436.1_1_1:46093930-46096305:-|nuORF;ENSG00000159592|ENST00000355105|GPBP1L1	ENST00000487436.1_1_1:46093930-46096305:-|nuORF	ENST00000487436.1_1_1:46093930-46096305:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2836608886719	2	463.273647	924.532741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.341	1	91.432	90.932	91.932	0.090668								0	0	0	0.37078	1	24241	24241		5.2307	2.6532	1				13550	5415	7602	7602	17198	17198					0.06745561219054252
HRLMKHDLK	9	Unmodified	_HRLMKHDLK_					0	0	0		ENST00000517617.1_1_8:68864752-69023167:+|nuORF;nc|ENSG00000046889|Q70Z35-4|PREX2;ENSG00000046889|ENST00000288368|PREX2;nc|ENSG00000046889|Q70Z35-3|PREX2;ENST00000529398.5_1_8:68864629-69017594:+|nuORF	ENST00000517617.1_1_8:68864752-69023167:+|nuORF	ENST00000517617.1_1_8:68864752-69023167:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.33447265625	2	589.334767	1176.65498	0.51033	0.00030076	-0.7561	-0.00044559	-0.24577	-0.00014484	589.3339868404069	57.08	0.58226	57.08	56.823	57.405	0					51	21	3	0	0	0	0.24467	1	13784	13784		17.113	4.8722	1	969160			13551	11439	7603	7603	17199	17199					0.07371978230594323
HRMVRRKGTK	10	Unmodified	_HRMVRRKGTK_					0	0	0			REV__ENST00000563307.1_1_16:58197945-58197978:-|nuORF	REV__ENST00000563307.1_1_16:58197945-58197978:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.876953125	2	634.877665	1267.74078	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.27	1	117.3	116.8	117.8	0.023476								0	0	0	0.38202	1	30406	30406		0.40072	0.050084	1		+		13552	22327	7604	7604	17200	17200					0.11761563136133191
HRNLRSRVR	9	Unmodified	_HRNLRSRVR_					0	0	0			REV__ENSG00000159905|ENST00000587682|ZNF221	REV__ENSG00000159905|ENST00000587682|ZNF221	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8567504882812	2	597.357954	1192.70135	0.5263	0.00031439	-0.0252	-1.5053E-05	0.5011	0.00029934	597.3585424498953	90.185	1.4279	90.185	89.495	90.923	0					313	115	4	0	0	0	0.34681	3	23778	23778;24044;24083		1.8442	1.2427	1	1038300	+		13553	16871	7605	7605	17201;17202;17203	17201					0.11271179176901569
HRNLRSRVR	9	Unmodified	_HRNLRSRVR_					0	0	0			REV__ENSG00000159905|ENST00000587682|ZNF221	REV__ENSG00000159905|ENST00000587682|ZNF221	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8566284179688	2	597.357954	1192.70135	0.51945	0.0003103	-0.39915	-0.00023844	0.1203	7.186E-05	597.3586078268477	90.167	1.2978	90.167	89.63	90.927	0.0003891					299	105	4	0	0	0	0.34681	1	24046	24046		1.8442	0.19162	1	970830	+		13554	16871	7605	7605	17204	17204					0.11271179176901569
HRPEKELRL	9	Unmodified	_HRPEKELRL_					0	0	0			REV__ENST00000302017.3_1_7:149462430-149462847:-|nuORF	REV__ENST00000302017.3_1_7:149462430-149462847:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.342529296875	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.34	1	117.34	116.84	117.84	0								0	0	0	0.2672	1	30347	30347		0.52476	0	1		+		13555	19829	7606	7606	17205	17205					0.09147016757128767
HRPEKELRL	9	Unmodified	_HRPEKELRL_					0	0	0			REV__ENST00000302017.3_1_7:149462430-149462847:-|nuORF	REV__ENST00000302017.3_1_7:149462430-149462847:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3438110351562	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.74	1	118.72	118.22	119.22	-0.024147								0	0	0	0.2672	1	30681	30681		0.52476	0	1		+		13556	19829	7606	7606	17206	17206					0.09147016757128767
HRPEKELRL	9	Unmodified	_HRPEKELRL_					0	0	0			REV__ENST00000302017.3_1_7:149462430-149462847:-|nuORF	REV__ENST00000302017.3_1_7:149462430-149462847:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3423461914062	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.01	1	118.99	118.49	119.49	-0.024147								0	0	0	0.2672	1	30739	30739		0.52476	0	1		+		13557	19829	7606	7606	17207	17207					0.09147016757128767
HRPEKELRL	9	Unmodified	_HRPEKELRL_					0	0	0			REV__ENST00000302017.3_1_7:149462430-149462847:-|nuORF	REV__ENST00000302017.3_1_7:149462430-149462847:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3414916992188	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.38	1	116.4	115.9	116.9	0.020988								0	0	0	0.2672	1	30199	30199		0.52476	0	1		+		13558	19829	7606	7606	17208	17208					0.09147016757128767
HRPILRTKK	9	Unmodified	_HRPILRTKK_					0	0	0			REV__HIST1H2AK|p.I79L|1|0.15|ENSG00000278677|chr6:27838105-27838105|T/G|missense_variant	REV__HIST1H2AK|p.I79L|1|0.15|ENSG00000278677|chr6:27838105-27838105|T/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.870849609375	2	574.872374	1147.73019	-0.178	-0.00010233	-2.8695	-0.0016496	-3.0475	-0.0017519	574.8712687082726	107.42	0.070465	107.42	107.38	107.45	0					21	10	3	0	0	0	0.34809	1	28309	28309		1.6526	0	1	1162400	+		13559	22762	7607	7607	17209	17209					0.16223903753370905
HRPLHLSH	8	Unmodified	_HRPLHLSH_					0	0	0		ENST00000378078.4_1_9:35755401-35755560:+|nuORF	ENST00000378078.4_1_9:35755401-35755560:+|nuORF	ENST00000378078.4_1_9:35755401-35755560:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7531433105469	2	498.777942	995.541332	0.31437	0.0001568	-1.6919	-0.00084389	-1.3775	-0.00068708	498.7770477424005	23.266	0.24906	23.221	23.084	23.334	-0.044867					11	8	2	0	0	0	0.34272	1	3378	3378		7.9102	2.6795	1	30882			13560	9950	7608	7608	17210	17210					0.04338251179899544
HRPPVIVL	8	Unmodified	_HRPPVIVL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.79766845703125	2	465.797812	929.581071	0.014233	6.6298E-06	-0.042228	-1.967E-05	-0.027994	-1.304E-05	465.797719765233	38.648	2.0448	38.739	38.373	40.418	0.090881					162	73	4	0	0	0	0.12267	6	8079	8033;8079;8138;8187;8237;8287		56.541	30.225	1	3665700			13561	6024	7609	7609	17211;17212;17213;17214;17215;17216	17212					0.11346378130599533
HRPPVIVL	8	Unmodified	_HRPPVIVL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7977600097656	2	465.797812	929.581071	0.31705	0.00014768	-0.32229	-0.00015012	-0.0052417	-2.4416E-06	465.7975861005131	38.569	2.0177	38.666	38.348	40.366	0.097527					172	72	4	0	0	0	0.12267	4	8054	8007;8054;8175;8222		56.541	32.117	1	3729700			13562	6024	7609	7609	17217;17218;17219;17220	17218					0.11346378130599533
HRQRVLQAA	9	Unmodified	_HRQRVLQAA_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2245483398438	2	539.815056	1077.61556	0.29202	0.00015764	1.7657	0.00095317	2.0577	0.0011108	539.8157359855416	15.935	0.38992	15.935	15.763	16.152	0					21	13	2	0	0	0	0.26168	1	1127	1127		1.8442	0	1	33087			13563	562	7610	7610	17221	17221					0.0798559427141754
HRQRVLQAA	9	Unmodified	_HRQRVLQAA_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2249145507812	2	539.815056	1077.61556	0.24604	0.00013281	1.2159	0.00065637	1.462	0.00078918	539.8154197411816	16.045	0.35806	15.93	15.781	16.139	-0.11434					15	11	2	0	0	0	0.25938	1	1176	1176		4.3292	0	1	32569			13564	562	7610	7610	17222	17222					0.0798559427141754
HRQRVLQAA	9	Unmodified	_HRQRVLQAA_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.2244873046875	2	539.815056	1077.61556	0.37384	0.0002018	1.1363	0.00061337	1.5101	0.00081517	539.8155495225072	15.998	0.33798	15.936	15.756	16.094	-0.062534					16	11	2	0	0	0	0.25938	1	1150	1150		4.3292	0	1	45824			13565	562	7610	7610	17223	17223					0.0798559427141754
HRRFEYKYSF	10	Unmodified	_HRRFEYKYSF_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1;ENST00000587561.1_1_18:57020403-57026476:-|nuORF	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.5757141113281	3	478.242199	1431.70477	0.10785	5.158E-05	-1.028	-0.00049164	-0.92016	-0.00044006	478.2417110632469	61.046	0.89439	61.036	60.888	61.783	-0.0094566					69	32	3	0	0	0	0.40943	1	15038	15038		1.7423	0.28716	1	1183500			13566	1024	7611	7611	17224	17224					0.006183844402585237
HRRIRPFTR	9	Unmodified	_HRRIRPFTR_					0	0	0			REV__ENST00000577839.1_1_17:61766126-61767181:+|nuORF	REV__ENST00000577839.1_1_17:61766126-61767181:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8697509765625	2	619.870697	1237.72684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.157	1	99.208	98.708	99.708	0.050888								0	0	0	0.2575	1	26537	26537		3.9444	0.66309	1		+		13567	18887	7612	7612	17225	17225					0.11748653699328315
HRRIRPFTR	9	Unmodified	_HRRIRPFTR_					0	0	0			REV__ENST00000577839.1_1_17:61766126-61767181:+|nuORF	REV__ENST00000577839.1_1_17:61766126-61767181:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.86865234375	2	619.870697	1237.72684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.298	1	99.349	98.849	99.849	0.050888								0	0	0	0.2575	1	26570	26570		3.9444	0.66309	1		+		13568	18887	7612	7612	17226	17226					0.11748653699328315
HRRKFRPHAA	10	Unmodified	_HRRKFRPHAA_					0	0	0			REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	REV__nc|ENSG00000100207|Q9UGU0-2|TCF20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.3668212890625	2	638.368321	1274.72209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.86	1	100.89	100.39	101.39	0.027206								0	0	0	0.37581	1	26925	26925		3.9444	2.4625	1		+		13569	14169	7613	7613	17227	17227					0.09571769556623622
HRRKLAQLE	9	Unmodified	_HRRKLAQLE_					0	0	0		nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1	nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3460693359375	2	575.843813	1149.67307	0.26564	0.00015297	-0.64139	-0.00036934	-0.37575	-0.00021637	575.84293819352	94.154	2.7072	94.241	93.425	96.132	0.08667					330	228	3	0	0	0	0.33018	1	25166	25166		4.3292	0.38484	1	501450			13570	2784;2783	7614	7614	17228	17228					0.10422436476960684
HRRLTFNIY	9	Unmodified	_HRRLTFNIY_					0	0	0			REV__nc|ENSG00000146276|P24046-2|GABRR1	REV__nc|ENSG00000146276|P24046-2|GABRR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.3377075195312	2	610.338364	1218.66217	0.092105	5.6215E-05	-0.99633	-0.0006081	-0.90422	-0.00055188	610.3376850708319	67.134	0.50052	67.117	66.893	67.393	-0.016296					37	16	3	0	0	0	0.25314	1	16830	16830		15.847	0	1	337200	+		13571	16340	7615	7615	17229	17229					0.06159034102711303
HRRMHKQL	8	Unmodified	_HRRMHKQL_					0	0	0			REV__nc|ENSG00000186300|Q8NEP9-4|ZNF555	REV__nc|ENSG00000186300|Q8NEP9-4|ZNF555	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3034057617188	2	553.311626	1104.6087	0.385	0.00021302	3.2983	0.001825	3.6833	0.002038	553.3135373306777	29.156	0.36064	29.168	29	29.361	0.012266					19	12	2	0	0	0	0.34092	1	5157	5157		13.508	0	1	91161	+		13572	18441	7616	7616	17230	17230					0.06057958119185969
HRRPPIGY	8	Unmodified	_HRRPPIGY_					0	0	0		ENSG00000168476|ENST00000306306|REEP4	ENSG00000168476|ENST00000306306|REEP4	ENSG00000168476|ENST00000306306|REEP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.78778076171875	2	498.280318	994.546083	0.45568	0.00022706	-0.8874	-0.00044218	-0.43172	-0.00021512	498.27994490854877	20.05	0.39843	19.934	19.642	20.04	-0.11592					30	13	3	0	0	0	0.34337	1	2412	2412		5.2307	0.33366	1	111150			13573	6277	7617	7617	17231	17231					0.048591353226470346
HRRPPIGY	8	Unmodified	_HRRPPIGY_					0	0	0		ENSG00000168476|ENST00000306306|REEP4	ENSG00000168476|ENST00000306306|REEP4	ENSG00000168476|ENST00000306306|REEP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	498.280318	994.546083	0.29049	0.00014474	-0.28085	-0.00013994	0.0096383	4.8026E-06	498.2801690103571	19.797	0.41215	19.797	19.574	19.986	0	-0.085675	0.00030205	NaN	5.2307	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133020			13574	6277	7617	7617							0.048591353226470346
HRRPPIGY	8	Unmodified	_HRRPPIGY_					0	0	0		ENSG00000168476|ENST00000306306|REEP4	ENSG00000168476|ENST00000306306|REEP4	ENSG00000168476|ENST00000306306|REEP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.280318	994.546083	0.52431	0.00026125	-0.53126	-0.00026472	-0.0069467	-3.4614E-06	498.2800040903738	19.973	0.41031	19.917	19.652	20.062	-0.055693	0.034127	5.2502E-05	NaN	5.2307	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143430			13575	6277	7617	7617							0.048591353226470346
HRRPSPRRLPR	11	Unmodified	_HRRPSPRRLPR_					0	0	0		ENSG00000230778|ENST00000434396|ANKRD63	ENSG00000230778|ENST00000434396|ANKRD63	ENSG00000230778|ENST00000434396|ANKRD63	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.62371826171875	3	476.623748	1426.84942	0.19569	9.3269E-05	0.47759	0.00022763	0.67328	0.0003209	476.9583751514221	103.08	0.44904	103.08	102.7	103.15	-0.0011063					155	56	3	0	0	0	0.48279	1	27373	27373		0.36667	0.24381	1	5062000			13576	8469	7618	7618	17232	17232					0.1530649043077119
HRRRAASPAR	10	Unmodified	_HRRRAASPAR_					0	0	0			REV__ENST00000358738.3_1_14:64971354-64988209:+|nuORF	REV__ENST00000358738.3_1_14:64971354-64988209:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3436279296875	2	589.342304	1176.67005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.105	1	91.196	90.696	91.696	0.090668								0	0	0	0.37739	1	24169	24169		3.2813	0	1		+		13577	20236	7619	7619	17233	17233					0.088786061428209
HRRRKRRE	8	Unmodified	_HRRRKRRE_					0	0	0			REV__ENST00000481661.1_1_14:59931594-59931975:-|nuORF	REV__ENST00000481661.1_1_14:59931594-59931975:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.3464965820312	2	597.36357	1192.71259	0.56395	0.00033688	2.522	0.0015065	3.0859	0.0018434	597.3644178518362	91.812	0.48276	91.813	91.437	91.92	0.00047302					47	32	2	0	0	0	0.34367	1	24272	24272		4.3292	0	1	261230	+		13578	21491	7620	7620	17234	17234					0.12394001271081834
HRRRKRRE	8	Unmodified	_HRRRKRRE_					0	0	0			REV__ENST00000481661.1_1_14:59931594-59931975:-|nuORF	REV__ENST00000481661.1_1_14:59931594-59931975:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	597.36357	1192.71259	0.44623	0.00026656	3.039	0.0018154	3.4852	0.0020819	597.3649543379436	91.789	0.14093	91.789	91.725	91.866	0	-0.012041	0.00038754	NaN	4.3292	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108000	+		13579	21491	7620	7620							0.12394001271081834
HRRRQRQL	8	Unmodified	_HRRRQRQL_					0	0	0			REV__ENST00000465930.1_1_2:98744784-98750261:+|nuORF	REV__ENST00000465930.1_1_2:98744784-98750261:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8448486328125	2	575.344846	1148.67514	0.415	0.00023877	-0.29047	-0.00016712	0.12454	7.1652E-05	575.3454592594685	88.398	2.6001	88.487	87.352	89.952	0.089195					247	141	4	0	0	0	0.4419	1	23523	23523		8.5933	0.43775	1	1377600	+		13580	21279	7621	7621	17235	17235					0.10674910005445781
HRRRRLRVGSR	11	Unmodified	_HRRRRLRVGSR_					0	0	0		ENST00000498611.5_1_22:50657979-50682900:-|nuORF	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.6346435546875	3	483.634647	1447.88211	0.25429	0.00012299	-0.17252	-8.3437E-05	0.081774	3.9549E-05	483.6344803124783	90.476	1.8136	90.476	89.392	91.205	0					387	140	5	0	0	0	0.48495	5	24041	23836;23874;23916;24041;24082		0.08335	0	1	1826100			13581	11256	7622	7622	17236;17237;17238;17239;17240	17239					0.17608697553600905
HRRRRLRVGSR	11	Unmodified	_HRRRRLRVGSR_					0	0	0		ENST00000498611.5_1_22:50657979-50682900:-|nuORF	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.6345520019531	3	483.634647	1447.88211	0.28722	0.00013891	-0.1654	-7.9991E-05	0.12182	5.8917E-05	483.63449106261726	90.186	0.562	90.277	89.954	90.516	0.090668					153	43	4	0	0	0	0.48495	3	23891	23811;23891;23926		0.08335	0	1	1388800			13582	11256	7622	7622	17241;17242;17243	17242					0.17608697553600905
HRRRRLRVGSR	11	Unmodified	_HRRRRLRVGSR_					0	0	0		ENST00000498611.5_1_22:50657979-50682900:-|nuORF	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.6343994140625	3	483.634647	1447.88211	0.26618	0.00012873	-0.085861	-4.1526E-05	0.18031	8.7206E-05	483.6344784482424	90.842	0.48771	90.932	90.816	91.303	0.090675					60	34	3	0	0	0	0.48558	1	24141	24141		0	0	1	1073400			13583	11256	7622	7622	17244	17244					0.17608697553600905
HRRRRLRVGSR	11	Unmodified	_HRRRRLRVGSR_					0	0	0		ENST00000498611.5_1_22:50657979-50682900:-|nuORF	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.63458251953125	3	483.634647	1447.88211	0.23451	0.00011342	-0.16957	-8.2009E-05	0.064939	3.1407E-05	483.6345207549693	91.961	0.60125	92.051	91.736	92.337	0.090675					67	38	2	0	0	0	0.48495	1	24479	24479		0.08335	0.08335	1	4233200			13584	11256	7622	7622	17245	17245					0.17608697553600905
HRRRRLRVGSR	11	Unmodified	_HRRRRLRVGSR_					0	0	0		ENST00000498611.5_1_22:50657979-50682900:-|nuORF	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.6346130371094	3	483.634647	1447.88211	0.2138	0.0001034	-0.041594	-2.0116E-05	0.17221	8.3285E-05	483.6345547624555	92.499	1.9314	92.588	92.23	94.162	0.089195					340	157	5	0	0	0	0.48495	1	24795	24795		0.08335	0	1	2989500			13585	11256	7622	7622	17246	17246					0.17608697553600905
HRRRRLRVGSR	11	Unmodified	_HRRRRLRVGSR_					0	0	0		ENST00000498611.5_1_22:50657979-50682900:-|nuORF	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.6345520019531	3	483.634647	1447.88211	0.38651	0.00018693	-0.042772	-2.0686E-05	0.34374	0.00016625	483.6345475685821	89.616	0.83876	89.615	89.078	89.917	-0.00081635					129	57	3	0	0	0	0.48558	1	23630	23630		0	0	1	755280			13586	11256	7622	7622	17247	17247					0.17608697553600905
HRRRRRRTPP	10	Unmodified	_HRRRRRRTPP_					0	0	0			REV__nc|ENSG00000171862|P60484-2|PTEN	REV__nc|ENSG00000171862|P60484-2|PTEN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2834167480469	3	463.283726	1386.82935	0.10605	4.9131E-05	-0.34079	-0.00015788	-0.23474	-0.00010875	463.2833946178155	88.916	2.2312	89.006	87.628	89.859	0.090569					238	121	2	0	0	0	0.32148	1	23526	23526		1.4551	1.4551	1	1544900	+		13587	23083	7623	7623	17248	17248					0.15140739490811939
HRRRRRRTPP	10	Unmodified	_HRRRRRRTPP_					0	0	0			REV__nc|ENSG00000171862|P60484-2|PTEN	REV__nc|ENSG00000171862|P60484-2|PTEN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	463.283726	1386.82935	0.28002	0.00012973	-0.39966	-0.00018516	-0.11964	-5.5428E-05	463.2833483787657	88.977	1.4902	88.976	88.361	89.851	-0.00080872	-0.073899	-2.7466E-05	NaN	1.4551	242	83	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1555200	+		13588	23083	7623	7623							0.15140739490811939
HRRWGGQI	8	Unmodified	_HRRWGGQI_					0	0	0			REV__nc|ENSG00000278259|Q96H55-4|MYO19	REV__nc|ENSG00000278259|Q96H55-4|MYO19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.76129150390625	2	505.275567	1008.53658	0.46723	0.00023608	-1.3663	-0.00069035	-0.89906	-0.00045427	505.27485354670796	44.456	0.8636	44.456	44.206	45.069	0					62	31	3	0	0	0	0.35375	1	9942	9942		24.674	0.65332	1	1182400	+		13589	19347	7624	7624	17249	17249					0.03265367037136002
HRTEVVKNN	9	Unmodified	_HRTEVVKNN_					0	0	0		ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7875366210938	2	548.796529	1095.5785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.543	1	72.514	72.014	73.014	-0.029305								0	0	0	0.22933	1	18484	18484		13.042	0.51092	1				13590	1261	7625	7625	17250	17250					0.0345387793502141
HRVFNRREI	9	Unmodified	_HRVFNRREI_					0	0	0		ENST00000298130.4_1_14:34903533-34903665:-|nuORF	ENST00000298130.4_1_14:34903533-34903665:-|nuORF	ENST00000298130.4_1_14:34903533-34903665:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.90460205078125	3	409.567017	1225.67922	0.47759	0.0001956	-3.2327	-0.001324	-2.7551	-0.0011284	409.56724039440485	36.737	0.39932	36.83	36.661	37.06	0.093018					16	14	2	0	0	0	0.32885	1	7469	7469		4.5289	0.65253	1	106540			13591	9203	7626	7626	17251	17251					0.07540954708520076
HRVGRWVTVR	10	Unmodified	_HRVGRWVTVR_					0	0	0		ENSG00000166166|ENST00000389749|TRMT61A	ENSG00000166166|ENST00000389749|TRMT61A	ENSG00000166166|ENST00000389749|TRMT61A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3682250976562	2	633.37053	1264.72651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.64	1	112.64	112.14	113.14	0								0	0	0	0.38126	1	29269	29269		1.6526	0.32309	1				13592	6038	7627	7627	17252	17252					0.10473233979496399
HRWKARRNK	9	Unmodified	_HRWKARRNK_					0	0	0			REV__ENSG00000063515|ENST00000086933|GSC2	REV__ENSG00000063515|ENST00000086933|GSC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.8763732910156	3	417.91464	1250.72209	-0.20357	-8.5075E-05	0.73795	0.0003084	0.53438	0.00022333	417.9148990861328	25.803	1.5602	25.803	25.475	27.035	0					192	54	6	0	0	0	0.24787	1	4164	4164		15.248	15.248	1	5549200	+		13593	13641	7628	7628	17253	17253					0.10675769556587511
HRWKARRNK	9	Unmodified	_HRWKARRNK_					0	0	0			REV__ENSG00000063515|ENST00000086933|GSC2	REV__ENSG00000063515|ENST00000086933|GSC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	417.91464	1250.72209	-0.07714	-3.2238E-05	0.68769	0.0002874	0.61055	0.00025516	417.91483118627997	25.84	1.554	25.801	25.47	27.024	-0.038671	-0.021013	0.00010054	NaN	15.248	180	54	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6234300	+		13594	13641	7628	7628							0.10675769556587511
HRWKARRNK	9	Unmodified	_HRWKARRNK_					0	0	0			REV__ENSG00000063515|ENST00000086933|GSC2	REV__ENSG00000063515|ENST00000086933|GSC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	417.91464	1250.72209	0.013473	5.6305E-06	0.44685	0.00018674	0.46032	0.00019238	417.9147869898404	25.885	1.4511	25.863	25.496	26.947	-0.022236	0.040334	-0.00020141	NaN	15.248	188	51	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5451600	+		13595	13641	7628	7628							0.10675769556587511
HRYNQTLF	8	Unmodified	_HRYNQTLF_					0	0	0			REV__ENST00000564685.5_1_16:70731013-70778503:-|nuORF	REV__ENST00000564685.5_1_16:70731013-70778503:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.330322265625	2	539.775065	1077.53558	0.86186	0.00046521	1.1663	0.00062956	2.0282	0.0010948	539.7758492215178	77.154	0.4446	77.123	76.93	77.375	-0.031334					25	15	2	0	0	0	0.33993	1	19955	19955		16.942	6.8684	1	212290	+		13596	14349	7629	7629	17254	17254					-8.892122446013673E-05
HSAAWLPQLVQ	11	Unmodified	_HSAAWLPQLVQ_					0	0	0			REV__ENSG00000161638|ENST00000293379|ITGA5	REV__ENSG00000161638|ENST00000293379|ITGA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.9143981933594	3	417.227779	1248.66151	-0.14493	-6.0469E-05	1.6361	0.00068261	1.4911	0.00062214	417.5620928011894	16.462	0.28379	16.462	16.349	16.632	0					17	9	3	0	0	0	0.33119	1	1308	1308		1.2148	0.20126	1	22585	+		13597	16945	7630	7630	17255	17255					0.04712194662965885
HSAESQILK	9	Unmodified	_HSAESQILK_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7744140625	2	506.774731	1011.53491	0.21159	0.00010723	-0.60348	-0.00030583	-0.39189	-0.0001986	506.77433912162365	18.06	0.56065	18.06	17.802	18.363	0					41	18	3	0	0	0	0.18022	1	1822	1822		37.075	10.807	1	166560			13598	6107	7631	7631	17256	17256					0.02960268437857394
HSAESQILK	9	Unmodified	_HSAESQILK_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7746887207031	2	506.774731	1011.53491	0.10293	5.2164E-05	-0.44244	-0.00022422	-0.33951	-0.00017206	506.77450705841125	18.209	0.71913	18.092	17.812	18.531	-0.11739					49	24	3	0	0	0	0.19888	1	1870	1870		32.037	9.3794	1	156490			13599	6107	7631	7631	17257	17257					0.02960268437857394
HSAESQILK	9	Unmodified	_HSAESQILK_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7746887207031	2	506.774731	1011.53491	0.031094	1.5758E-05	-0.49117	-0.00024891	-0.46007	-0.00023315	506.774500748764	18.227	0.58218	18.169	17.927	18.509	-0.058172					47	20	3	0	0	0	0.16039	1	1866	1866		42.312	10.275	1	158820			13600	6107	7631	7631	17258	17258					0.02960268437857394
HSEDVIVVKF	10	Unmodified	_HSEDVIVVKF_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8342895507812	2	586.819138	1171.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.065	1	81.065	80.565	81.565	0								0	0	0	0.3629	1	21099	21099		9.3831	1.473	1		+		13601	15141	7632	7632	17259	17259					0.04477683677487221
HSEDVIVVKF	10	Unmodified	_HSEDVIVVKF_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.834228515625	2	586.819138	1171.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.881	1	80.946	80.446	81.446	0.065094								0	0	0	0.37044	1	21032	21032		6.2058	0.47393	1		+		13602	15141	7632	7632	17260	17260					0.04477683677487221
HSFKPEELMVK	11	Oxidation (M)	_HSFKPEELM(Oxidation (M))VK_		HSFKPEELM(1)VK		HSFKPEELM(55)VK	0	0	1		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2357482910156	3	454.235834	1359.68567	0.16224	7.3694E-05	-0.23328	-0.00010596	-0.071042	-3.227E-05	454.2356744993395	30.661	0.86506	30.661	30.225	31.09	0					87	30	4	0	0	0	0.042305	1	5624	5624		55.467	44.402	1	903790			13603	5002	7633	7633	17261	17261		617			0.020216670343188525
HSFKPEELMVK	11	Oxidation (M)	_HSFKPEELM(Oxidation (M))VK_		HSFKPEELM(1)VK		HSFKPEELM(42)VK	0	0	1		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2359619140625	3	454.235834	1359.68567	0.1687	7.663E-05	-0.10689	-4.8555E-05	0.061807	2.8075E-05	454.23568640372986	30.632	0.73888	30.66	30.298	31.037	0.027946					79	25	4	0	0	0	0.087272	1	5615	5615		42.466	28.247	1	957660			13604	5002	7633	7633	17262	17262		617			0.020216670343188525
HSFKPEELMVK	11	Oxidation (M)	_HSFKPEELM(Oxidation (M))VK_		HSFKPEELM(1)VK		HSFKPEELM(52)VK	0	0	1		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.23590087890625	3	454.235834	1359.68567	-0.055337	-2.5136E-05	-0.0067728	-3.0764E-06	-0.06211	-2.8213E-05	454.23578477077245	30.648	0.69368	30.675	30.309	31.002	0.027157					84	24	4	0	0	0	0.054445	1	5609	5609		51.957	37.739	1	899390			13605	5002	7633	7633	17263	17263		617			0.020216670343188525
HSFRNSPTFK	10	Unmodified	_HSFRNSPTFK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENST00000520877.5_1_8:80950353-80963533:-|nuORF	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5437316894531	3	407.543878	1219.60981	-0.11425	-4.6561E-05	-0.16971	-6.9164E-05	-0.28396	-0.00011572	407.543865521179	24.854	1.3357	24.798	24.46	25.796	-0.055931					152	46	4	0	0	0	0.35238	2	3853	3853;3912		12.228	2.077	1	2989400			13606	12589	7634	7634	17264;17265	17264					0.008784509690713094
HSFRNSPTFK	10	Unmodified	_HSFRNSPTFK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENST00000520877.5_1_8:80950353-80963533:-|nuORF	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.543701171875	3	407.543878	1219.60981	-0.30416	-0.00012396	-0.063327	-2.5808E-05	-0.36748	-0.00014977	407.54393509005547	24.798	1.3681	24.767	24.456	25.824	-0.031408					178	47	5	0	0	0	0.33036	1	3839	3839		16.275	1.8692	1	2817900			13607	12589	7634	7634	17266	17266					0.008784509690713094
HSFRNSPTFK	10	Unmodified	_HSFRNSPTFK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENST00000520877.5_1_8:80950353-80963533:-|nuORF	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	407.543878	1219.60981	-0.11425	-4.6561E-05	-0.16971	-6.9164E-05	-0.28396	-0.00011572	407.543865521179	24.854	1.3357	24.798	24.46	25.796	-0.055931	0.028869	8.6357E-05	NaN	16.275	152	46	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2989400			13608	12589	7634	7634							0.008784509690713094
HSGGPLYGPF	10	Unmodified	_HSGGPLYGPF_					0	0	0			REV__ENST00000407537.5_1_22:19949237-19950204:+|nuORF	REV__ENST00000407537.5_1_22:19949237-19950204:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2509155273438	2	516.250892	1030.48723	0.26739	0.00013804	-0.3927	-0.00020273	-0.12532	-6.4695E-05	516.2507772903052	42.814	1.1374	42.814	42.465	43.602	0					98	41	4	0	0	0	0.18807	1	9360	9360		34.102	8.7031	1	1516300	+		13609	20744	7635	7635	17267	17267					-0.026793857623488293
HSGGPLYGPF	10	Unmodified	_HSGGPLYGPF_					0	0	0			REV__ENST00000407537.5_1_22:19949237-19950204:+|nuORF	REV__ENST00000407537.5_1_22:19949237-19950204:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	516.250892	1030.48723	0.26739	0.00013804	-0.3927	-0.00020273	-0.12532	-6.4695E-05	516.2507772903052	42.814	1.1374	42.814	42.465	43.602	0	0.24897	-0.0001608	NaN	34.102	98	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1516300	+		13610	20744	7635	7635							-0.026793857623488293
HSGGPLYGPF	10	Unmodified	_HSGGPLYGPF_					0	0	0			REV__ENST00000407537.5_1_22:19949237-19950204:+|nuORF	REV__ENST00000407537.5_1_22:19949237-19950204:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	516.250892	1030.48723	0.21059	0.00010872	-0.16022	-8.2715E-05	0.050366	2.6002E-05	516.2509231572684	42.3	1.0523	42.392	42.095	43.147	0.091362	-0.17311	7.9237E-05	NaN	34.102	92	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1634600	+		13611	20744	7635	7635							-0.026793857623488293
HSGILLSKRLN	11	Unmodified	_HSGILLSKRLN_					0	0	0			REV__ENSG00000151704|ENST00000392666|KCNJ1	REV__ENSG00000151704|ENST00000392666|KCNJ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2501525878906	3	413.250695	1236.73025	0.26273	0.00010857	-0.35523	-0.0001468	-0.092499	-3.8225E-05	413.2508421883753	91.671	1.2199	91.762	91.093	92.313	0.090675					174	84	3	0	0	0	0.46277	1	24405	24405		1.2148	0	1	617610	+		13612	16552	7636	7636	17268	17268					0.121358589627107
HSGYNFFIR	9	Unmodified	_HSGYNFFIR_					0	0	0		ENST00000359039.4_1_9:21334854-21334980:-|nuORF	ENST00000359039.4_1_9:21334854-21334980:-|nuORF	ENST00000359039.4_1_9:21334854-21334980:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.78369140625	2	570.78289	1139.55123	0.15992	9.1281E-05	0.59883	0.0003418	0.75875	0.00043308	570.7834361057957	28.451	0.7584	28.446	27.994	28.752	-0.0042572					52	26	3	0	0	0	0.31763	1	4949	4949		6.2058	0	1	295110			13613	9658	7637	7637	17269	17269					-0.012966056053983266
HSIPWCICATF	11	Unmodified	_HSIPWCICATF_					0	0	0		chr10:89462624-89506310|321|10.73|0.6|4.16|-|0|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|7	chr10:89462624-89506310|321|10.73|0.6|4.16|-|0|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|7	chr10:89462624-89506310|321|10.73|0.6|4.16|-|0|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.55914306640625	3	426.531705	1276.57328	-0.23434	-9.9953E-05	-0.20577	-8.7768E-05	-0.44011	-0.00018772	426.5317278437473	23.498	1.0886	23.498	23.224	24.312	0					113	37	4	0	0	0	0.33296	1	3686	3686		2.6312	1.4379	1	1283500			13614	117	7638	7638	17270	17270					-0.05393885243529439
HSKHHAAYV	9	Unmodified	_HSKHHAAYV_					0	0	0		nc|ENSG00000291237|P04179-3|SOD2;nc|ENSG00000291237|P04179-4|SOD2;nc|ENSG00000291237|P04179-2|SOD2;nc|ENSG00000291237|P04179|SOD2	nc|ENSG00000291237|P04179-3|SOD2	nc|ENSG00000291237|P04179-3|SOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2669067382812	2	525.267407	1048.52026	0.16611	8.7252E-05	-0.92671	-0.00048677	-0.7606	-0.00039952	525.2668316950152	12.83	0.28324	12.83	12.669	12.952	0					19	9	3	0	0	0	0.11461	1	250	250		36.127	23.595	1	110230			13615	13015	7639	7639	17271	17271					-0.0020575891962835158
HSKHHAAYV	9	Unmodified	_HSKHHAAYV_					0	0	0		nc|ENSG00000291237|P04179-3|SOD2;nc|ENSG00000291237|P04179-4|SOD2;nc|ENSG00000291237|P04179-2|SOD2;nc|ENSG00000291237|P04179|SOD2	nc|ENSG00000291237|P04179-3|SOD2	nc|ENSG00000291237|P04179-3|SOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2669677734375	2	525.267407	1048.52026	0.15547	8.1662E-05	-0.51092	-0.00026837	-0.35546	-0.00018671	525.2671835580799	12.9	0.4617	12.8	12.549	13.011	-0.099291					25	15	3	0	0	0	0.03069	1	264	264		60.074	40.817	1	109090			13616	13015	7639	7639	17272	17272					-0.0020575891962835158
HSKHHAAYV	9	Unmodified	_HSKHHAAYV_					0	0	0		nc|ENSG00000291237|P04179-3|SOD2;nc|ENSG00000291237|P04179-4|SOD2;nc|ENSG00000291237|P04179-2|SOD2;nc|ENSG00000291237|P04179|SOD2	nc|ENSG00000291237|P04179-3|SOD2	nc|ENSG00000291237|P04179-3|SOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2671508789062	2	525.267407	1048.52026	0.085681	4.5005E-05	-0.41785	-0.00021948	-0.33217	-0.00017448	525.2670404701529	12.87	0.49336	12.803	12.58	13.073	-0.067496					26	16	3	0	0	0	0.33018	1	269	269		4.3292	0.38484	1	140540			13617	13015	7639	7639	17273	17273					-0.0020575891962835158
HSLLFFSS	8	Unmodified	_HSLLFFSS_					0	0	0		ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF	ENST00000488347.5_1_X:101149758-101186981:-|nuORF	ENST00000488347.5_1_X:101149758-101186981:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.24249267578125	2	469.242535	936.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.513	1	81.582	81.082	82.082	0.068993								0	0	0	0.35466	1	21228	21228		12.532	3.9383	1				13618	10711	7640	7640	17274	17274					-0.0002588664827953835
HSLNQLRVVSI	11	Unmodified	_HSLNQLRVVSI_					0	0	0		ENST00000469100.5_1_1:33240923-33241058:-|nuORF	ENST00000469100.5_1_1:33240923-33241058:-|nuORF	ENST00000469100.5_1_1:33240923-33241058:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.36962890625	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.42	1	100.42	99.916	100.92	0								0	0	0	0.37707	1	26832	26832		2.2828	0.43854	1				13619	10848	7641	7641	17275	17275					0.1033955510006308
HSLNQLRVVSI	11	Unmodified	_HSLNQLRVVSI_					0	0	0		ENST00000469100.5_1_1:33240923-33241058:-|nuORF	ENST00000469100.5_1_1:33240923-33241058:-|nuORF	ENST00000469100.5_1_1:33240923-33241058:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3693237304688	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.35	1	100.39	99.887	100.89	0.038994								0	0	0	0.37501	1	26817	26817		2.7352	0.23671	1				13620	10848	7641	7641	17276	17276					0.1033955510006308
HSMDFVAYR	9	Oxidation (M)	_HSM(Oxidation (M))DFVAYR_		HSM(1)DFVAYR		HSM(220)DFVAYR	0	0	1		ENSG00000179091|ENST00000318911|CYC1;ENST00000533444.1_1_8:145150729-145152236:+|nuORF	ENSG00000179091|ENST00000318911|CYC1	ENSG00000179091|ENST00000318911|CYC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2584838867188	2	571.258391	1140.50223	0.16156	9.2292E-05	0.0378	2.1593E-05	0.19936	0.00011389	571.2584106524513	28.619	1.6357	28.619	28.31	29.945	0					164	58	5	0	0	0	9.9094E-17	4	5054	4963;5010;5054;5100		215.27	160.5	1	3743400			13621	7101	7642	7642	17277;17278;17279;17280	17279		796			-0.062402619566682915
HSMDFVAYR	9	Oxidation (M)	_HSM(Oxidation (M))DFVAYR_		HSM(1)DFVAYR		HSM(220)DFVAYR	0	0	1		ENSG00000179091|ENST00000318911|CYC1;ENST00000533444.1_1_8:145150729-145152236:+|nuORF	ENSG00000179091|ENST00000318911|CYC1	ENSG00000179091|ENST00000318911|CYC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2584228515625	2	571.258391	1140.50223	0.25368	0.00014492	-0.050445	-2.8817E-05	0.20324	0.0001161	571.2583456600427	28.641	1.7933	28.637	28.306	30.099	-0.0042572					171	62	5	0	0	0	9.9094E-17	3	5021	4973;5021;5067		215.27	160.5	1	4536200			13622	7101	7642	7642	17281;17282;17283	17282		796			-0.062402619566682915
HSMDFVAYR	9	Oxidation (M)	_HSM(Oxidation (M))DFVAYR_		HSM(1)DFVAYR		HSM(220)DFVAYR	0	0	1		ENSG00000179091|ENST00000318911|CYC1;ENST00000533444.1_1_8:145150729-145152236:+|nuORF	ENSG00000179091|ENST00000318911|CYC1	ENSG00000179091|ENST00000318911|CYC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.258544921875	2	571.258391	1140.50223	0.023668	1.352E-05	0.24892	0.0001422	0.27259	0.00015572	571.2585195260956	28.648	1.8145	28.649	28.268	30.082	0.0004673					176	63	5	0	0	0	9.9094E-17	4	5047	4949;4998;5047;5093		215.27	166.92	1	4308700			13623	7101	7642	7642	17284;17285;17286;17287	17286		796			-0.062402619566682915
HSMDTLLATLK	11	Oxidation (M)	_HSM(Oxidation (M))DTLLATLK_		HSM(1)DTLLATLK		HSM(160)DTLLATLK	0	0	1		ENSG00000177556|ENST00000313115|ATOX1;ENST00000522145.5_1_5:151125888-151126107:-|nuORF	ENSG00000177556|ENST00000313115|ATOX1	ENSG00000177556|ENST00000313115|ATOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.3292846679688	2	623.329013	1244.64347	0.34852	0.00021724	-0.026317	-1.6404E-05	0.32221	0.00020084	623.3289385374468	40.175	0.9929	40.175	39.803	40.796	0					85	35	3	0	0	0	1.6446E-12	3	8538	8493;8538;8583		157.49	134.83	1	1238000			13624	6997	7643	7643	17288;17289;17290	17289		786			0.030936916259634017
HSMDTLLATLK	11	Oxidation (M)	_HSM(Oxidation (M))DTLLATLK_		HSM(1)DTLLATLK		HSM(150)DTLLATLK	0	0	1		ENSG00000177556|ENST00000313115|ATOX1;ENST00000522145.5_1_5:151125888-151126107:-|nuORF	ENSG00000177556|ENST00000313115|ATOX1	ENSG00000177556|ENST00000313115|ATOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.3292846679688	2	623.329013	1244.64347	0.27341	0.00017043	0.062482	3.8947E-05	0.33589	0.00020937	623.329004015555	40.007	0.86509	40.1	39.72	40.585	0.09267					75	30	3	0	0	0	5.0857E-09	3	8509	8454;8509;8561		150.18	130.81	1	1315000			13625	6997	7643	7643	17291;17292;17293	17292		786			0.030936916259634017
HSMDTLLATLK	11	Oxidation (M)	_HSM(Oxidation (M))DTLLATLK_		HSM(1)DTLLATLK		HSM(140)DTLLATLK	0	0	1		ENSG00000177556|ENST00000313115|ATOX1;ENST00000522145.5_1_5:151125888-151126107:-|nuORF	ENSG00000177556|ENST00000313115|ATOX1	ENSG00000177556|ENST00000313115|ATOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.3294677734375	2	623.329013	1244.64347	0.26305	0.00016396	0.047627	2.9687E-05	0.31067	0.00019365	623.3290264027037	39.976	0.91163	40.076	39.705	40.617	0.099403					92	32	4	0	0	0	1.3273E-08	3	8480	8431;8480;8531		139.32	121.88	1	1258900			13626	6997	7643	7643	17294;17295;17296	17295		786			0.030936916259634017
HSNASQIMSYF	11	Unmodified	_HSNASQIMSYF_					0	0	0			REV__ENSG00000165675|ENST00000394363|ENOX2	REV__ENSG00000165675|ENST00000394363|ENOX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	643.2687377929688	2	642.787512	1283.56047	0.64938	0.00041741	2.4639	0.0015838	3.1133	0.0020012	642.7892811903844	64.219	0.45938	64.219	64.053	64.513	0					22	16	2	0	0	0	0.31831	1	15958	15958		20.581	13.479	1	209520	+		13627	17253	7644	7644	17297	17297					-0.06996625102033249
HSNASQIMSYF	11	Unmodified	_HSNASQIMSYF_					0	0	0			REV__ENSG00000165675|ENST00000394363|ENOX2	REV__ENSG00000165675|ENST00000394363|ENOX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	643.268798828125	2	642.787512	1283.56047	0.64938	0.00041741	2.4639	0.0015838	3.1133	0.0020012	642.7892811903844	64.219	0.45938	64.219	64.053	64.513	0					22	16	2	0	0	0	0.32149	1	16003	16003		15.739	0.90035	1	209520	+		13628	17253	7644	7644	17298	17298					-0.06996625102033249
HSNASQIMSYF	11	Unmodified	_HSNASQIMSYF_					0	0	0			REV__ENSG00000165675|ENST00000394363|ENOX2	REV__ENSG00000165675|ENST00000394363|ENOX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	643.2694091796875	2	642.787512	1283.56047	0.60782	0.0003907	2.811	0.0018069	3.4188	0.0021976	642.7892063920822	64.167	0.43394	64.259	63.986	64.42	0.09288					24	15	2	0	0	0	0.36569	1	15911	15911		15.739	8.6369	1	205750	+		13629	17253	7644	7644	17299	17299					-0.06996625102033249
HSNASQIMSYF	11	Unmodified	_HSNASQIMSYF_					0	0	0			REV__ENSG00000165675|ENST00000394363|ENOX2	REV__ENSG00000165675|ENST00000394363|ENOX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	643.2686767578125	2	642.787512	1283.56047	0.60782	0.0003907	2.811	0.0018069	3.4188	0.0021976	642.7892063920822	64.167	0.43394	64.259	63.986	64.42	0.09288					24	15	2	0	0	0	0.3245	1	15956	15956		17.443	4.4002	1	205750	+		13630	17253	7644	7644	17300	17300					-0.06996625102033249
HSPDLVKLIVK	11	Unmodified	_HSPDLVKLIVK_					0	0	0			REV__JAK1|p.L722Wfs*49|1|0.27|ENSG00000162434|chr1:64844841-64844841|G/-|frameshift_variant	REV__JAK1|p.L722Wfs*49|1|0.27|ENSG00000162434|chr1:64844841-64844841|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.91448974609375	3	416.927329	1247.76016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.44	1	16.377	15.877	16.877	-0.062534								0	0	0	0.38114	1	1327	1327		1.3296	0.21989	1		+		13631	16983	7645	7645	17301	17301					0.14618797908019587
HSPDNNII	8	Unmodified	_HSPDNNII_					0	0	0		ENSG00000188786|ENST00000373036|MTF1	ENSG00000188786|ENST00000373036|MTF1	ENSG00000188786|ENST00000373036|MTF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.22711181640625	2	455.224874	908.435195	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.958	1	78.958	78.458	79.458	0								0	0	0	0.36961	1	20453	20453		5.7604	0	1				13632	7775	7646	7646	17302	17302					-0.022685491760967125
HSPLANSQCLY	11	Unmodified	_HSPLANSQCLY_					0	0	0			REV__nc|ENSG00000123124|Q9H0M0-6|WWP1	REV__nc|ENSG00000123124|Q9H0M0-6|WWP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8841247558594	3	411.529129	1231.56556	0.4467	0.00018383	2.0062	0.00082562	2.4529	0.0010094	411.8640175562615	20.219	0.13678	20.166	20.093	20.229	-0.05291					6	4	2	0	0	0	0.33085	1	2466	2466		2.8433	0.4085	1	91632	+		13633	15179	7647	7647	17303	17303					-0.040963212393990034
HSQSGFYYK	9	Unmodified	_HSQSGFYYK_					0	0	0		nc|ENSG00000115761|Q9BSC4-4|NOL10;nc|ENSG00000115761|Q9BSC4-2|NOL10;ENSG00000115761|ENST00000381685|NOL10;NOL10|p.P134Qfs*28|1|0.37|ENSG00000115761|chr2:10671617-10671617|G/-|frameshift_variant	nc|ENSG00000115761|Q9BSC4-4|NOL10	nc|ENSG00000115761|Q9BSC4-4|NOL10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.7592163085938	2	558.759081	1115.50361	0.19925	0.00011133	0.095196	5.3191E-05	0.29444	0.00016452	558.7589798270222	22.116	0.72636	22.116	21.896	22.622	0					57	25	4	0	0	0	0.048637	2	3026	3026;3079		53.404	35.031	1	224930			13634	12663	7648	7648	17304;17305	17304					-0.0495230459623599
HSQSGFYYK	9	Unmodified	_HSQSGFYYK_					0	0	0		nc|ENSG00000115761|Q9BSC4-4|NOL10;nc|ENSG00000115761|Q9BSC4-2|NOL10;ENSG00000115761|ENST00000381685|NOL10;NOL10|p.P134Qfs*28|1|0.37|ENSG00000115761|chr2:10671617-10671617|G/-|frameshift_variant	nc|ENSG00000115761|Q9BSC4-4|NOL10	nc|ENSG00000115761|Q9BSC4-4|NOL10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.75927734375	2	558.759081	1115.50361	0.2871	0.00016042	-0.0012146	-6.7866E-07	0.28588	0.00015974	558.7589494902792	22.164	0.53044	22.063	21.86	22.39	-0.10034					48	19	3	0	0	0	0.048637	2	3057	3057;3110		53.404	35.031	1	229530			13635	12663	7648	7648	17306;17307	17306					-0.0495230459623599
HSQSGFYYK	9	Unmodified	_HSQSGFYYK_					0	0	0		nc|ENSG00000115761|Q9BSC4-4|NOL10;nc|ENSG00000115761|Q9BSC4-2|NOL10;ENSG00000115761|ENST00000381685|NOL10;NOL10|p.P134Qfs*28|1|0.37|ENSG00000115761|chr2:10671617-10671617|G/-|frameshift_variant	nc|ENSG00000115761|Q9BSC4-4|NOL10	nc|ENSG00000115761|Q9BSC4-4|NOL10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.7591552734375	2	558.759081	1115.50361	0.091288	5.1008E-05	-0.087087	-4.866E-05	0.0042014	2.3476E-06	558.7590831338683	22.156	0.87054	22.107	21.804	22.674	-0.049377					53	30	2	0	0	0	0.069258	3	3071	3018;3071;3125		45.74	32.125	1	264670			13636	12663	7648	7648	17308;17309;17310	17309					-0.0495230459623599
HSQWQNVV	8	Unmodified	_HSQWQNVV_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.8318786621094	2	499.246141	996.477728	0.31633	0.00015793	-0.03241	-1.6181E-05	0.28392	0.00014174	499.24598579975395	37.781	0.76799	37.878	37.552	38.32	0.097527					47	27	2	0	0	0	0.3408	1	7835	7835		14.838	0.93222	1	237410			13637	5158	7649	7649	17311	17311					-0.02065154047852502
HSSPPKTTYTL	11	Unmodified	_HSSPPKTTYTL_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.3187255859375	2	616.319502	1230.62445	0.35002	0.00021572	-1.0919	-0.00067299	-0.74193	-0.00045727	616.3186739866877	45.353	0.43982	45.353	45.146	45.586	0					27	15	2	0	0	0	0.089036	1	10154	10154		41.956	2.0059	1	351870	+		13638	15947	7650	7650	17312	17312					0.018364783265724327
HSSPPKTTYTL	11	Unmodified	_HSSPPKTTYTL_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	616.319502	1230.62445	0.30708	0.00018926	-0.65379	-0.00040295	-0.34672	-0.00021369	616.3190444622219	45.14	0.47527	45.209	44.952	45.427	0.068569	-0.033534	0.00027142	NaN	41.956	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313720	+		13639	15947	7650	7650							0.018364783265724327
HSSPPKTTYTL	11	Unmodified	_HSSPPKTTYTL_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	616.319502	1230.62445	0.34007	0.00020959	-0.88333	-0.00054441	-0.54326	-0.00033482	616.318816554331	45.091	0.43235	45.166	44.962	45.394	0.07505	-0.07673	-1.1515E-05	NaN	41.956	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356610	+		13640	15947	7650	7650							0.018364783265724327
HSTDRVVLI	9	Unmodified	_HSTDRVVLI_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.G196R|1|0.37|ENSG00000165119|chr9:83972903-83972903|C/T|missense_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2984619140625	2	520.298373	1038.58219	-0.75564	-0.00039316	0.44583	0.00023196	-0.30981	-0.00016119	520.2984704382927	34.628	0.91526	34.628	34.336	35.251	0					83	32	3	0	0	0	0.0098873	1	6812	6812		79.596	29.663	1	1379400			13641	5928	7651	7651	17313	17313					0.06444547708861137
HSTDRVVLI	9	Unmodified	_HSTDRVVLI_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.G196R|1|0.37|ENSG00000165119|chr9:83972903-83972903|C/T|missense_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2986450195312	2	520.298373	1038.58219	-0.95125	-0.00049493	0.46736	0.00024316	-0.48389	-0.00025177	520.298519368256	34.552	1.1297	34.627	34.299	35.429	0.075306					92	40	3	0	0	0	0.015924	1	6794	6794		70.332	28.492	1	1534300			13642	5928	7651	7651	17314	17314					0.06444547708861137
HSTDRVVLI	9	Unmodified	_HSTDRVVLI_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.G196R|1|0.37|ENSG00000165119|chr9:83972903-83972903|C/T|missense_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2985229492188	2	520.298373	1038.58219	-0.26445	-0.00013759	-0.41184	-0.00021428	-0.67629	-0.00035187	520.2980845446209	34.517	1.0043	34.594	34.279	35.283	0.077381					76	35	3	0	0	0	0.013404	1	6770	6770		74.2	32.36	1	1599200			13643	5928	7651	7651	17315	17315					0.06444547708861137
HSTPRPLNI	9	Unmodified	_HSTPRPLNI_					0	0	0		TRPS1|p.N1148Dfs*8|1|0.11|ENSG00000104447|chr8:115414400-115414427|CAACAGCTGAAAAATGAGGAGGCAGATT/-|frameshift_variant;nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;TRPS1|p.N1276Kfs*5|1|0.11|ENSG00000104447|chr8:115414041-115414042|-/T|frameshift_variant;ENSG00000104447|ENST00000395715|TRPS1	TRPS1|p.N1148Dfs*8|1|0.11|ENSG00000104447|chr8:115414400-115414427|CAACAGCTGAAAAATGAGGAGGCAGATT/-|frameshift_variant	TRPS1|p.N1148Dfs*8|1|0.11|ENSG00000104447|chr8:115414400-115414427|CAACAGCTGAAAAATGAGGAGGCAGATT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.23193359375	2	517.790715	1033.56688	0.059375	3.0744E-05	-0.21174	-0.00010964	-0.15236	-7.8892E-05	517.7903483711603	29.644	0.36997	29.657	29.481	29.85	0.013475					26	12	3	0	0	0	0.24636	1	5352	5352		16.149	5.0346	1	127920			13644	1894	7652	7652	17316	17316					0.051436809116466975
HSTPSIPVL	9	Unmodified	_HSTPSIPVL_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.V1010Cfs*42|1|0.18|ENSG00000168488|chr16:28836062-28836062|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.76910400390625	2	475.768917	949.523281	0.36055	0.00017154	-0.84902	-0.00040394	-0.48847	-0.0002324	475.7684252155162	64.002	0.62033	64.002	63.722	64.342	0					53	22	3	0	0	0	0.22188	2	15859	15859;15909		20.454	3.5113	1	835330			13645	64	7653	7653	17317;17318	17317					0.04650071414505419
HSTPSIPVL	9	Unmodified	_HSTPSIPVL_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.V1010Cfs*42|1|0.18|ENSG00000168488|chr16:28836062-28836062|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7685241699219	2	475.768917	949.523281	0.39659	0.00018869	-1.4938	-0.00071073	-1.0973	-0.00052204	475.7683718235528	63.89	0.6558	63.983	63.678	64.334	0.092884					62	23	4	0	0	0	0.21303	1	15868	15868		21.747	4.8044	1	807780			13646	64	7653	7653	17319	17319					0.04650071414505419
HSTPSIPVL	9	Unmodified	_HSTPSIPVL_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.V1010Cfs*42|1|0.18|ENSG00000168488|chr16:28836062-28836062|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.76898193359375	2	475.768917	949.523281	0.46582	0.00022162	-1.2323	-0.00058628	-0.76646	-0.00036466	475.76846865061543	63.988	0.62085	63.979	63.718	64.339	-0.0095291					61	22	4	0	0	0	0.12846	1	15857	15857		34.102	3.8776	1	862700			13647	64	7653	7653	17320	17320					0.04650071414505419
HSVAPVHKRG	10	Unmodified	_HSVAPVHKRG_					0	0	0			REV__ENST00000589786.5_1_19:34287891-34292238:+|nuORF	REV__ENST00000589786.5_1_19:34287891-34292238:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.8192138671875	2	544.309606	1086.60466	0.69598	0.00037883	-1.3969	-0.00076032	-0.70088	-0.0003815	544.3087604566387	32.591	0.27654	32.591	32.415	32.692	0					14	9	2	0	0	0	0.31358	1	6256	6256		13.906	1.6654	1	74333	+		13648	22535	7654	7654	17321	17321					0.06482191897134726
HSVDPFIV	8	Unmodified	_HSVDPFIV_					0	0	0			REV__ENST00000381482.7_1_20:2125208-2125481:+|nuORF	REV__ENST00000381482.7_1_20:2125208-2125481:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.24212646484375	2	457.242535	912.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.497	1	87.584	87.084	88.084	0.08709								0	0	0	0.36961	1	23067	23067		5.7604	0	1		+		13649	20565	7655	7655	17322	17322					0.010781133517070884
HSWFRAPTTGA	11	Unmodified	_HSWFRAPTTGA_					0	0	0		ENST00000357166.10_1_X:128976028-128977851:-|nuORF	ENST00000357166.10_1_X:128976028-128977851:-|nuORF	ENST00000357166.10_1_X:128976028-128977851:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.8844909667969	3	410.871995	1229.59415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.685	1	20.575	20.075	21.075	-0.11003								0	0	0	0.36995	1	2615	2615		3.8459	0.49018	1				13650	9630	7656	7656	17323	17323					-0.011458355479817328
HTANIFSVK	9	Unmodified	_HTANIFSVK_					0	0	0		nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1;nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1	nc|ENSG00000142784|Q8N5D0-5|WDTC1	nc|ENSG00000142784|Q8N5D0-5|WDTC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.77960205078125	2	508.779816	1015.54508	0.14385	7.3189E-05	1.9801	0.0010074	2.1239	0.0010806	508.78110803976364	30.919	1.1747	30.947	30.354	31.528	0.027946					91	41	3	0	0	0	0.068498	2	5723	5723;5769		46.022	24.485	1	420370			13651	12733	7657	7657	17324;17325	17324					0.03792876163095116
HTGGRGKL	8	Unmodified	_HTGGRGKL_					0	0	0		ENST00000597953.1_1_3:142719968-142720172:-|nuORF	ENST00000597953.1_1_3:142719968-142720172:-|nuORF	ENST00000597953.1_1_3:142719968-142720172:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.238037109375	2	413.238119	824.461684	0.0048023	1.9845E-06	0.038511	1.5914E-05	0.043314	1.7899E-05	413.23804298304435	67.148	3.9637	67.148	65.768	69.732	0					217	142	2	0	0	0	0.45942	2	17115	17115;17171		2.5775	0	1	492550			13652	12236	7658	7658	17326;17327	17326					0.04243184505912723
HTGKPLEV	8	Unmodified	_HTGKPLEV_					0	0	0		ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF;CR1|p.G1229Afs*27|1|0.34|ENSG00000203710|chr1:207580338-207580338|G/-|frameshift_variant;CR1|p.V1282Rfs*18|1|0.03|ENSG00000203710|chr1:207580590-207580591|-/AGAGAAATCTGGAAGCCAGA|frameshift_variant;nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1	ENST00000436595.1_1_1:207669690-207743292:+|nuORF	ENST00000436595.1_1_1:207669690-207743292:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.7476806640625	2	440.747985	879.481417	0.054954	2.4221E-05	-0.94133	-0.00041489	-0.88638	-0.00039067	440.7474931592929	17.802	1.2	17.802	17.477	18.677	0					97	40	4	0	0	0	0.26862	1	1757	1757		34.402	5.3201	1	463300			13653	242	7659	7659	17328	17328					0.03685515725987898
HTGKPLEV	8	Unmodified	_HTGKPLEV_					0	0	0		ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF;CR1|p.G1229Afs*27|1|0.34|ENSG00000203710|chr1:207580338-207580338|G/-|frameshift_variant;CR1|p.V1282Rfs*18|1|0.03|ENSG00000203710|chr1:207580590-207580591|-/AGAGAAATCTGGAAGCCAGA|frameshift_variant;nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1	ENST00000436595.1_1_1:207669690-207743292:+|nuORF	ENST00000436595.1_1_1:207669690-207743292:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.7474670410156	2	440.747985	879.481417	-0.09039	-3.9839E-05	-0.95965	-0.00042297	-1.05	-0.0004628	440.7475148529372	17.92	1.2107	17.802	17.467	18.678	-0.11739					104	41	4	0	0	0	0.3398	1	1787	1787		26.268	7.0112	1	470500			13654	242	7659	7659	17329	17329					0.03685515725987898
HTGKPLEV	8	Unmodified	_HTGKPLEV_					0	0	0		ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF;CR1|p.G1229Afs*27|1|0.34|ENSG00000203710|chr1:207580338-207580338|G/-|frameshift_variant;CR1|p.V1282Rfs*18|1|0.03|ENSG00000203710|chr1:207580590-207580591|-/AGAGAAATCTGGAAGCCAGA|frameshift_variant;nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1	ENST00000436595.1_1_1:207669690-207743292:+|nuORF	ENST00000436595.1_1_1:207669690-207743292:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.74755859375	2	440.747985	879.481417	-0.025563	-1.1267E-05	-1.1447	-0.0005045	-1.1702	-0.00051577	440.7474113461041	17.906	1.1484	17.846	17.53	18.679	-0.060431					106	40	4	0	0	0	0.26862	1	1793	1793		34.402	5.3201	1	495360			13655	242	7659	7659	17330	17330					0.03685515725987898
HTGPARVL	8	Unmodified	_HTGPARVL_					0	0	0		ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.74798583984375	2	425.748319	849.482085	-0.24973	-0.00010632	0.074241	3.1608E-05	-0.17549	-7.4715E-05	425.74819457607754	18.818	0.92979	18.818	18.563	19.493	0					66	32	4	0	0	0	0.43758	1	2038	2038		10.074	0	1	361860			13656	12018	7660	7660	17331	17331					0.05132355165721947
HTGPVRAL	8	Unmodified	_HTGPVRAL_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.7478942871094	2	425.748319	849.482085	-0.26909	-0.00011457	-0.06561	-2.7933E-05	-0.3347	-0.0001425	425.74820136093496	18.955	0.93055	18.838	18.556	19.486	-0.11739					70	32	3	0	0	0	0.42371	2	2068	2068;2114		14.838	0	1	349970			13657	4177	7661	7661	17332;17333	17332					0.051323551656992095
HTGPVRAL	8	Unmodified	_HTGPVRAL_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;ENST00000506497.5_1_4:83799153-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.7480163574219	2	425.748319	849.482085	-0.29363	-0.00012501	-0.24196	-0.00010301	-0.53559	-0.00022803	425.7482012030507	18.904	0.94022	18.846	18.628	19.568	-0.058172					68	32	3	0	0	0	0.42371	1	2072	2072		14.838	0	1	388130			13658	4177	7661	7661	17334	17334					0.051323551656992095
HTGQASHECTE	11	Unmodified	_HTGQASHECTE_					0	0	0		nc|ENSG00000142303|Q9H324-2|ADAMTS10;nc|ENSG00000142303|Q9H324|ADAMTS10;ENSG00000142303|ENST00000597188|ADAMTS10	nc|ENSG00000142303|Q9H324-2|ADAMTS10	nc|ENSG00000142303|Q9H324-2|ADAMTS10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.2402954101562	2	600.240926	1198.4673	0.59046	0.00035442	-1.0356	-0.00062163	-0.44516	-0.00026721	600.2401297276435	85.194	0.67934	85.182	84.961	85.64	-0.01284					73	26	5	0	0	0	0.43149	1	22360	22360		7.1017	2.7725	1	463970			13659	4435	7662	7662	17335	17335					-0.12399549555243539
HTHTLSLFFD	10	Unmodified	_HTHTLSLFFD_					0	0	0			REV__ENST00000399916.5_1_1:25291100-25291430:-|nuORF	REV__ENST00000399916.5_1_1:25291100-25291430:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8473510742188	2	609.301113	1216.58767	0.61567	0.00037513	-0.43816	-0.00026697	0.17751	0.00010816	609.3007037670044	84.283	0.33765	84.36	84.223	84.56	0.077095					19	13	2	0	0	0	0.31289	1	22053	22053		13.906	2.2658	1	69623	+		13660	20696	7663	7663	17336	17336					-0.011957734993302438
HTISIKTL	8	Unmodified	_HTISIKTL_					0	0	0			REV__nc|ENSG00000115459|Q96FG2-6|ELMOD3	REV__nc|ENSG00000115459|Q96FG2-6|ELMOD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7777404785156	2	456.779285	911.544017	-0.23602	-0.00010781	-3.051	-0.0013936	-3.287	-0.0015014	456.7779787793494	13.166	0.55672	13.166	12.952	13.509	0					49	19	5	0	0	0	0.34367	1	371	371		4.3292	0	1	143800	+		13661	22961	7664	7664	17337	17337					0.08470661794183343
HTISPFMNK	9	Oxidation (M)	_HTISPFM(Oxidation (M))NK_		HTISPFM(1)NK		HTISPFM(89)NK	0	0	1		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000492709.5_1_20:30126008-30136787:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.7875366210938	2	545.771134	1089.52771	0.42047	0.00022948	-0.072014	-3.9303E-05	0.34845	0.00019018	545.7711093125299	24.855	1.3424	24.855	24.22	25.562	0					96	45	3	0	0	0	0.0046246	3	3855	3789;3841;3855		89.401	64.727	1	455320			13662	1681	7665	7665	17338;17339;17340	17340		208			-0.01346787434226826
HTISPFMNK	9	Oxidation (M)	_HTISPFM(Oxidation (M))NK_		HTISPFM(1)NK		HTISPFM(64)NK	0	0	1		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000492709.5_1_20:30126008-30136787:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.787353515625	2	545.771134	1089.52771	0.49103	0.00026799	0.23693	0.00012931	0.72796	0.0003973	545.771154089943	24.945	1.138	24.889	24.315	25.453	-0.055931					83	39	3	0	0	0	0.020233	2	3889	3845;3889		63.961	45.826	1	399970			13663	1681	7665	7665	17341;17342	17342		208			-0.01346787434226826
HTKLDKHKN	9	Unmodified	_HTKLDKHKN_					0	0	0			REV__nc|ENSG00000092529|P20807-5|CAPN3	REV__nc|ENSG00000092529|P20807-5|CAPN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.764892578125	2	560.814722	1119.61489	-0.38882	-0.00021806	-2.5011	-0.0014027	-2.89	-0.0016207	560.8132867409721	34.335	0.71461	34.401	34.12	34.834	0.06636					35	25	2	0	0	0	0.25938	1	6858	6858		4.3292	0.38484	1	177190	+		13664	14084	7666	7666	17343	17343					0.05986754831701546
HTKLDKHKN	9	Unmodified	_HTKLDKHKN_					0	0	0			REV__nc|ENSG00000092529|P20807-5|CAPN3	REV__nc|ENSG00000092529|P20807-5|CAPN3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	560.814722	1119.61489	-0.068637	-3.8493E-05	-2.5274	-0.0014174	-2.596	-0.0014559	560.8131909293589	34.254	0.51076	34.32	34.153	34.664	0.0667	-0.074635	-4.5792E-05	NaN	4.3292	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143620	+		13665	14084	7666	7666							0.05986754831701546
HTKRQVNK	8	Unmodified	_HTKRQVNK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2557067871094	2	505.796332	1009.57811	0.020125	1.0179E-05	0.60853	0.00030779	0.62866	0.00031797	505.79657288113486	14.821	0.33591	14.821	14.676	15.012	0					26	11	3	0	0	0	0.34378	1	870	870		3.9444	1.6417	1	72546	+		13666	16705;23038	7667	7667	17344	17344					0.0737050300580222
HTKRQVNK	8	Unmodified	_HTKRQVNK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2555847167969	2	505.796332	1009.57811	0.059915	3.0305E-05	0.15101	7.6382E-05	0.21093	0.00010669	505.7964753728247	14.966	0.39434	14.856	14.56	14.955	-0.10981					21	13	3	0	0	0	0.34367	1	902	902		4.3292	2.0265	1	98183	+		13667	16705;23038	7667	7667	17345	17345					0.0737050300580222
HTKSLHVIN	9	Unmodified	_HTKSLHVIN_					0	0	0			REV__ENSG00000142556|ENST00000270649|ZNF614	REV__ENSG00000142556|ENST00000270649|ZNF614	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2474365234375	2	524.79854	1047.58253	0.53456	0.00028054	0.72561	0.0003808	1.2602	0.00066133	524.7990194479262	32.098	0.3701	32.139	32.031	32.401	0.040989					18	12	2	0	0	0	0.24913	1	6063	6063		12.532	3.9383	1	111670	+		13668	16126	7668	7668	17346	17346					0.06063967428713113
HTKVLQLSSRP	11	Unmodified	_HTKVLQLSSRP_					0	0	0			REV__ENST00000603865.1_1_11:75507249-75507624:+|nuORF	REV__ENST00000603865.1_1_11:75507249-75507624:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.36962890625	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.002	1	93.002	92.502	93.502	0								0	0	0	0.36517	1	24757	24757		4.897	0.36815	1		+		13669	22649	7669	7669	17347	17347					0.10339555100085818
HTLDSYRILQK	11	Unmodified	_HTLDSYRILQK_					0	0	0		nc|ENSG00000134574|Q92466-3|DDB2;nc|ENSG00000134574|Q92466-2|DDB2;nc|ENSG00000134574|Q92466-5|DDB2;ENSG00000134574|ENST00000256996|DDB2	nc|ENSG00000134574|Q92466-3|DDB2	nc|ENSG00000134574|Q92466-3|DDB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.5896911621094	3	458.589376	1372.7463	0.37238	0.00017077	0.12047	5.5248E-05	0.49285	0.00022602	458.5894157877253	33.935	1.3544	33.935	33.538	34.892	0					140	48	5	0	0	0	1.1615E-05	2	6653	6607;6653		122.78	54.345	1	3726000			13670	3797	7670	7670	17348;17349	17349					0.07483520408959521
HTLDSYRILQK	11	Unmodified	_HTLDSYRILQK_					0	0	0		nc|ENSG00000134574|Q92466-3|DDB2;nc|ENSG00000134574|Q92466-2|DDB2;nc|ENSG00000134574|Q92466-5|DDB2;ENSG00000134574|ENST00000256996|DDB2	nc|ENSG00000134574|Q92466-3|DDB2	nc|ENSG00000134574|Q92466-3|DDB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.58966064453125	3	458.589376	1372.7463	0.51808	0.00023759	-0.1111	-5.0949E-05	0.40698	0.00018664	458.58929751702794	33.735	1.8851	33.802	33.51	35.396	0.06636					178	67	4	0	0	0	1.6737E-08	2	6605	6555;6605		134.73	58.661	1	3841300			13671	3797	7670	7670	17350;17351	17351					0.07483520408959521
HTLDSYRILQK	11	Unmodified	_HTLDSYRILQK_					0	0	0		nc|ENSG00000134574|Q92466-3|DDB2;nc|ENSG00000134574|Q92466-2|DDB2;nc|ENSG00000134574|Q92466-5|DDB2;ENSG00000134574|ENST00000256996|DDB2	nc|ENSG00000134574|Q92466-3|DDB2	nc|ENSG00000134574|Q92466-3|DDB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.58966064453125	3	458.589376	1372.7463	0.0090504	4.1504E-06	0.50634	0.0002322	0.51539	0.00023635	458.5895868809111	33.756	1.4407	33.822	33.441	34.882	0.066704					144	51	5	0	0	0	1.6737E-08	2	6558	6558;6599		134.73	58.661	1	3763600			13672	3797	7670	7670	17352;17353	17352					0.07483520408959521
HTLEPHIFP	9	Unmodified	_HTLEPHIFP_					0	0	0		nc|ENSG00000153246|Q13018-2|PLA2R1;ENSG00000153246|ENST00000283243|PLA2R1	nc|ENSG00000153246|Q13018-2|PLA2R1	nc|ENSG00000153246|Q13018-2|PLA2R1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.7713623046875	2	545.787641	1089.56073	0.26018	0.000142	-0.60344	-0.00032935	-0.34325	-0.00018734	545.7872725130412	24.896	0.74818	24.865	24.571	25.319	-0.031408					56	25	3	0	0	0	0.30623	1	3832	3832		7.9102	3.5809	1	536270			13673	5069	7671	7671	17354	17354					0.019531626801381208
HTLFPILVW	9	Unmodified	_HTLFPILVW_					0	0	0			REV__ENST00000397269.7_1_10:5948371-5948467:+|nuORF	REV__ENST00000397269.7_1_10:5948371-5948467:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3087768554688	2	563.326402	1124.63825	-0.073006	-4.1126E-05	-1.0412	-0.00058651	-1.1142	-0.00062764	563.8247942370372	12.774	0.11571	12.774	12.699	12.815	0					9	3	3	0	0	0	0.34536	1	226	226		2.0598	0.40713	1	31021	+		13674	20668	7672	7672	17355	17355					0.08091800616330147
HTLHLCSREL	10	Unmodified	_HTLHLCSREL_					0	0	0			REV__ENST00000449079.7_1_20:2740250-2740700:+|nuORF	REV__ENST00000449079.7_1_20:2740250-2740700:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.23187255859375	3	403.545002	1207.61318	0.041217	1.6633E-05	-0.073182	-2.9532E-05	-0.031965	-1.2899E-05	403.5449136767814	29.901	0.50777	29.901	29.605	30.113	0					26	17	2	0	0	0	0.31691	1	5329	5329		5.4027	1.5264	1	144500	+		13675	21100	7673	7673	17356	17356					0.017673777514573885
HTLHLCSREL	10	Unmodified	_HTLHLCSREL_					0	0	0			REV__ENST00000449079.7_1_20:2740250-2740700:+|nuORF	REV__ENST00000449079.7_1_20:2740250-2740700:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	403.545002	1207.61318	-0.38846	-0.00015676	0.22629	9.1318E-05	-0.16217	-6.5442E-05	403.54507511627753	29.956	0.46187	29.97	29.684	30.146	0.013474	0.035687	0.00022783	NaN	5.4027	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66840	+		13676	21100	7673	7673							0.017673777514573885
HTLHLQLHIK	10	Unmodified	_HTLHLQLHIK_					0	0	0			REV__ENSG00000140836|ENST00000268489|ZFHX3	REV__ENSG00000140836|ENST00000268489|ZFHX3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3734741210938	2	620.369664	1238.72478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.271	1	97.271	96.771	97.771	0								0	0	0	0.38126	1	26008	26008		1.6526	0.17072	1		+		13677	16053	7674	7674	17357	17357					0.11496180170888692
HTLHLQLHIK	10	Unmodified	_HTLHLQLHIK_					0	0	0			REV__ENSG00000140836|ENST00000268489|ZFHX3	REV__ENSG00000140836|ENST00000268489|ZFHX3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3694458007812	2	620.369664	1238.72478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.8	1	117.8	117.3	118.3	0								0	0	0	0.38126	1	30451	30451		1.6526	0.17072	1		+		13678	16053	7674	7674	17358	17358					0.11496180170888692
HTLHLQLHIK	10	Unmodified	_HTLHLQLHIK_					0	0	0			REV__ENSG00000140836|ENST00000268489|ZFHX3	REV__ENSG00000140836|ENST00000268489|ZFHX3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3727416992188	2	620.369664	1238.72478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.81	1	98.803	98.303	99.303	-0.006897								0	0	0	0.38126	1	26475	26475		1.6526	0	1		+		13679	16053	7674	7674	17359	17359					0.11496180170888692
HTLLKTLPEV	10	Unmodified	_HTLLKTLPEV_					0	0	0			REV__ENST00000483596.5_1_10:23220925-23250957:+|nuORF	REV__ENST00000483596.5_1_10:23220925-23250957:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.84326171875	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.3	1	110.3	109.8	110.8	0								0	0	0	0.37739	1	28784	28784		3.2813	0.28607	1		+		13680	17227	7675	7675	17360	17360					0.10690847091291289
HTMEFALVK	9	Oxidation (M)	_HTM(Oxidation (M))EFALVK_		HTM(1)EFALVK		HTM(110)EFALVK	0	0	1		ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2817993164062	2	546.281334	1090.54812	0.48083	0.00026267	0.55209	0.00030159	1.0329	0.00056426	546.2815875825869	31.815	1.6692	31.815	31.45	33.119	0					116	59	3	0	0	0	0.0016712	3	6002	5954;6002;6048		114.2	80.099	1	2526300			13681	7306	7676	7676	17361;17362;17363	17362		814			0.00646383225603131
HTMEFALVK	9	Oxidation (M)	_HTM(Oxidation (M))EFALVK_		HTM(1)EFALVK		HTM(110)EFALVK	0	0	1		ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.2817993164062	2	546.281334	1090.54812	0.64555	0.00035265	0.28725	0.00015692	0.93281	0.00050957	546.2814595057891	31.776	1.4477	31.818	31.458	32.906	0.042364					104	51	3	0	0	0	0.0024096	3	5986	5938;5986;6032		106.94	80.057	1	3221200			13682	7306	7676	7676	17364;17365;17366	17365		814			0.00646383225603131
HTMEFALVK	9	Oxidation (M)	_HTM(Oxidation (M))EFALVK_		HTM(1)EFALVK		HTM(110)EFALVK	0	0	1		ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.2821044921875	2	546.281334	1090.54812	0.58678	0.00032055	0.52212	0.00028522	1.1089	0.00060577	546.2815172208872	31.759	1.4101	31.8	31.394	32.804	0.040991					99	50	3	0	0	0	0.0024096	3	5938	5938;5986;6032		106.94	80.057	1	2658500			13683	7306	7676	7676	17367;17368;17369	17367		814			0.00646383225603131
HTMYTRYL	8	Unmodified	_HTMYTRYL_					0	0	0			REV__nc|ENSG00000163521|Q6UWU2-2|GLB1L	REV__nc|ENSG00000163521|Q6UWU2-2|GLB1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8079223632812	2	542.765852	1083.51715	0.84032	0.0004561	1.1912	0.00064654	2.0315	0.0011026	542.7663284992509	78.221	0.52261	78.279	78.058	78.58	0.058151					50	18	4	0	0	0	0.34092	1	20282	20282		8.5933	6.749	1	269250	+		13684	17064	7677	7677	17370	17370					-0.021267700886483
HTNPAALRI	9	Unmodified	_HTNPAALRI_					0	0	0		ENST00000561487.1_1_16:2577913-2578724:+|nuORF;ENSG00000162066|ENST00000293971|AMDHD2;nc|ENSG00000162066|Q9Y303-2|AMDHD2;nc|ENSG00000162066|Q9Y303-3|AMDHD2	ENST00000561487.1_1_16:2577913-2578724:+|nuORF	ENST00000561487.1_1_16:2577913-2578724:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2655334472656	2	496.785433	991.556313	0.44686	0.00022199	-1.7431	-0.00086594	-1.2962	-0.00064394	496.7843818321606	29.8	0.67067	29.812	29.56	30.23	0.012266					39	22	2	0	0	0	0.23784	1	5378	5378		13.906	5.1606	1	262350			13685	5546	7678	7678	17371	17371					0.060196982572165325
HTNTLTEVIS	10	Unmodified	_HTNTLTEVIS_					0	0	0		L1ME4a_dup4290|chr2:119443233-119443543:+|1.1626009674898368|0.3565523303468222|1.71|533.0|12|3|sense	L1ME4a_dup4290|chr2:119443233-119443543:+|1.1626009674898368|0.3565523303468222|1.71|533.0|12|3|sense	L1ME4a_dup4290|chr2:119443233-119443543:+|1.1626009674898368|0.3565523303468222|1.71|533.0|12|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2581787109375	2	557.790578	1113.5666	0.42708	0.00023822	3.6668	0.0020453	4.0939	0.0022835	557.7924078633073	58.546	0.12479	58.546	58.5	58.624	0					5	3	2	0	0	0	0.31691	1	14193	14193		9.3831	2.0939	1	87305			13686	12465	7679	7679	17372	17372					0.014362164011572531
HTPSGSKK	8	Unmodified	_HTPSGSKK_					0	0	0			REV__ENSG00000162849|ENST00000407071|KIF26B	REV__ENSG00000162849|ENST00000407071|KIF26B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.24298095703125	2	421.229959	840.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.237	1	15.173	14.673	15.673	-0.064413								0	0	0	0.35663	1	966	966		11.64	0	1		+		13687	17015	7680	7680	17373	17373					0.018760585491463644
HTPTPETKPP	10	Unmodified	_HTPTPETKPP_					0	0	0		nc|ENSG00000182901|P49802-4|RGS7;nc|ENSG00000182901|P49802-2|RGS7;nc|ENSG00000182901|P49802-3|RGS7;nc|ENSG00000182901|P49802-5|RGS7;ENSG00000182901|ENST00000440928|RGS7	nc|ENSG00000182901|P49802-4|RGS7	nc|ENSG00000182901|P49802-4|RGS7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7764892578125	2	552.787838	1103.56112	0.41208	0.00022779	-1.3647	-0.00075441	-0.95266	-0.00052662	552.7869682472593	21.222	0.45589	21.169	21.033	21.488	-0.052912					25	15	2	0	0	0	0.40106	1	2831	2831		3.2813	1.6287	1	47663			13688	7332	7681	7681	17374	17374					0.013485376093512969
HTQPLLLPRL	10	Unmodified	_HTQPLLLPRL_					0	0	0		ENST00000328933.9_1_22:39777925-39778135:+|nuORF	ENST00000328933.9_1_22:39777925-39778135:+|nuORF	ENST00000328933.9_1_22:39777925-39778135:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8280639648438	2	594.36659	1186.71863	0.67355	0.00040034	1.873	0.0011133	2.5466	0.0015136	594.3673677819089	40.095	0.64402	40.188	39.83	40.474	0.09267					34	22	2	0	0	0	0.31926	1	8567	8567		5.7319	0.83484	1	145650			13689	9434	7682	7682	17375	17375					0.13273661939388148
HTQRQRRQR	9	Unmodified	_HTQRQRRQR_					0	0	0		ENSG00000151388|ENST00000504830|ADAMTS12;nc|ENSG00000151388|P58397-3|ADAMTS12	ENSG00000151388|ENST00000504830|ADAMTS12	ENSG00000151388|ENST00000504830|ADAMTS12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3695678710938	2	633.355942	1264.69733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.582	1	89.581	89.081	90.081	-0.00080872								0	0	0	0.24715	1	23699	23699		7.2892	1.5574	1				13690	4960	7683	7683	17376	17376					0.07557089683200502
HTRNYHHLV	9	Unmodified	_HTRNYHHLV_					0	0	0			REV__ENSG00000170381|ENST00000643230|SEMA3E	REV__ENSG00000170381|ENST00000643230|SEMA3E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3230590820312	2	588.804688	1175.59482	0.018913	1.1136E-05	1.9449	0.0011452	1.9638	0.0011563	588.8057309976155	12.446	0.28176	12.446	12.273	12.555	0					14	8	2	0	0	0	0.26251	1	102	102		0.6015	0	1	19928	+		13691	17578	7684	7684	17377	17377					0.014050038917275742
HTRQHRILD	9	Unmodified	_HTRQHRILD_					0	0	0			REV__ENSG00000169957|ENST00000380412|ZNF768	REV__ENSG00000169957|ENST00000380412|ZNF768	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.323486328125	2	588.323245	1174.63194	-0.075483	-4.4408E-05	0.31451	0.00018503	0.23903	0.00014063	588.3231851241986	12.331	0.26665	12.263	12.167	12.434	-0.06806					22	8	3	0	0	0	0.34681	1	118	118		1.8442	0	1	85194	+		13692	17554	7685	7685	17378	17378					0.05160675437514328
HTRRIAEAL	9	Unmodified	_HTRRIAEAL_					0	0	0			REV__nc|ENSG00000147224|P60891-2|PRPS1	REV__nc|ENSG00000147224|P60891-2|PRPS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2951049804688	2	533.809439	1065.60433	0.8764	0.00046783	2.2155	0.0011827	3.0919	0.0016505	533.808970218999	78.62	0.097946	78.589	78.532	78.63	-0.030434					5	3	2	0	0	0	0.25066	1	20331	20331		3.9444	0	1	60061	+		13693	14295	7686	7686	17379	17379					0.07414772177276063
HTRVPTAV	8	Unmodified	_HTRVPTAV_					0	0	0			REV__ENST00000570827.6_1_17:9548127-9548559:+|nuORF	REV__ENST00000570827.6_1_17:9548127-9548559:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.7474365234375	2	440.753601	879.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.203	1	18.144	17.644	18.644	-0.058174								0	0	0	0.36009	1	1859	1859		10.074	0	1		+		13694	22415	7687	7687	17380	17380					0.048083378201340565
HTSREVLIIF	10	Unmodified	_HTSREVLIIF_					0	0	0		ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF	ENST00000522654.5_1_5:70344846-70358599:-|nuORF	ENST00000522654.5_1_5:70344846-70358599:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.9006042480469	3	405.567912	1213.68191	-0.41271	-0.00016738	-0.19553	-7.9301E-05	-0.60824	-0.00024668	405.56799651247485	35.412	1.5815	35.412	34.618	36.2	0					168	57	5	0	0	0	0.35961	3	7015	7015;7052;7104		10.899	4.2755	1	3189400			13695	4670	7688	7688	17381;17382;17383	17381					0.0836136532279852
HTSREVLIIF	10	Unmodified	_HTSREVLIIF_					0	0	0		ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF	ENST00000522654.5_1_5:70344846-70358599:-|nuORF	ENST00000522654.5_1_5:70344846-70358599:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5677490234375	3	405.567912	1213.68191	-0.67523	-0.00027385	0.098896	4.0109E-05	-0.57633	-0.00023374	405.5680953357944	35.322	1.246	35.4	34.78	36.026	0.077381					152	44	5	0	0	0	0.33753	3	7031	6977;7031;7078		14.957	4.0582	1	3351400			13696	4670	7688	7688	17384;17385;17386	17385					0.0836136532279852
HTVTTLLK	8	Unmodified	_HTVTTLLK_					0	0	0			REV__ENST00000541834.1_1_12:121017123-121017560:-|nuORF	REV__ENST00000541834.1_1_12:121017123-121017560:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.76666259765625	2	456.779285	911.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.383	1	15.383	14.883	15.883	0								0	0	0	0.37724	1	1010	1010		2.3027	0	1		+		13697	22131	7689	7689	17387	17387					0.08470661794194712
HTWQHITLFSK	11	Unmodified	_HTWQHITLFSK_					0	0	0			REV__ENSG00000227124|ENST00000652011|ZNF717	REV__ENSG00000227124|ENST00000652011|ZNF717	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.25714111328125	3	466.582333	1396.72517	0.307	0.00014324	2.1129	0.00098583	2.4199	0.0011291	466.5831755703267	47.274	0.50801	47.274	46.932	47.44	0					25	17	2	0	0	0	0.3325	1	10766	10766		4.1166	0.79699	1	280300	+		13698	19123	7690	7690	17388	17388					0.04267555100068421
HTYIAETRV	9	Unmodified	_HTYIAETRV_					0	0	0			REV__ENST00000528737.5_1_11:58911149-58911227:+|nuORF	REV__ENST00000528737.5_1_11:58911149-58911227:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3135986328125	2	545.288005	1088.56146	0.54247	0.0002958	1.5558	0.00084836	2.0983	0.0011442	545.288929565621	31.158	0.51871	31.199	31.016	31.535	0.040991					33	18	3	0	0	0	0.2524	1	5864	5864		11.495	2.1116	1	542290	+		13699	21990	7691	7691	17389	17389					0.020719573291671622
HTYIAETRV	9	Unmodified	_HTYIAETRV_					0	0	0			REV__ENST00000528737.5_1_11:58911149-58911227:+|nuORF	REV__ENST00000528737.5_1_11:58911149-58911227:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	545.288005	1088.56146	0.27362	0.0001492	1.7819	0.00097164	2.0555	0.0011208	545.2890112225018	31.246	0.49277	31.246	31.09	31.583	0	0.0073256	0.00019278	NaN	11.495	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	520790	+		13700	21990	7691	7691							0.020719573291671622
HTYIAETRV	9	Unmodified	_HTYIAETRV_					0	0	0			REV__ENST00000528737.5_1_11:58911149-58911227:+|nuORF	REV__ENST00000528737.5_1_11:58911149-58911227:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	545.288005	1088.56146	0.31815	0.00017348	1.4484	0.00078978	1.7665	0.00096327	545.2886973639316	31.229	0.46502	31.271	31.078	31.543	0.042364	0.032599	-0.00017094	NaN	11.495	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	497270	+		13701	21990	7691	7691							0.020719573291671622
HTYRKYHF	8	Unmodified	_HTYRKYHF_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.2923583984375	2	576.290882	1150.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.41	1	112.41	111.91	112.91	0								0	0	0	0.37724	1	29220	29220		2.3027	0.4585	1		+		13702	18892	7692	7692	17390	17390					-0.0020489936848662182
HTYRKYHF	8	Unmodified	_HTYRKYHF_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.2927856445312	2	576.290882	1150.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.06	1	113.06	112.56	113.56	0								0	0	0	0.37724	1	29371	29371		2.3027	0.24298	1		+		13703	18892	7692	7692	17391	17391					-0.0020489936848662182
HTYRKYHF	8	Unmodified	_HTYRKYHF_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.2930297851562	2	576.290882	1150.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.35	1	113.35	112.85	113.85	0								0	0	0	0.37078	1	29440	29440		5.2307	0.90143	1		+		13704	18892	7692	7692	17392	17392					-0.0020489936848662182
HTYRKYHF	8	Unmodified	_HTYRKYHF_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.291748046875	2	576.290882	1150.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.68	1	113.68	113.18	114.18	0								0	0	0	0.37078	1	29520	29520		5.2307	0.90143	1		+		13705	18892	7692	7692	17393	17393					-0.0020489936848662182
HTYRKYHF	8	Unmodified	_HTYRKYHF_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.2926025390625	2	576.290882	1150.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.85	1	114.85	114.35	115.35	0								0	0	0	0.37078	1	29783	29783		5.2307	0.90143	1		+		13706	18892	7692	7692	17394	17394					-0.0020489936848662182
HTYRKYHF	8	Unmodified	_HTYRKYHF_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.2930908203125	2	576.290882	1150.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.09	1	116.09	115.59	116.59	0								0	0	0	0.37078	1	30066	30066		5.2307	0.90143	1		+		13707	18892	7692	7692	17395	17395					-0.0020489936848662182
HTYRKYHF	8	Unmodified	_HTYRKYHF_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.2919311523438	2	576.290882	1150.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.68	1	112.67	112.17	113.17	-0.015625								0	0	0	0.37724	1	29309	29309		2.3027	0.24298	1		+		13708	18892	7692	7692	17396	17396					-0.0020489936848662182
HTYRKYHF	8	Unmodified	_HTYRKYHF_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.2914428710938	2	576.290882	1150.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.31	1	116.29	115.79	116.79	-0.022781								0	0	0	0.37724	1	30133	30133		2.3027	0.24298	1		+		13709	18892	7692	7692	17397	17397					-0.0020489936848662182
HTYRKYHF	8	Unmodified	_HTYRKYHF_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.2933349609375	2	576.290882	1150.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.88	1	116.86	116.36	117.36	-0.022781								0	0	0	0.37724	1	30267	30267		2.3027	0.24298	1		+		13710	18892	7692	7692	17398	17398					-0.0020489936848662182
HTYRKYHF	8	Unmodified	_HTYRKYHF_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.2930908203125	2	576.290882	1150.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.02	1	117	116.5	117.5	-0.022781								0	0	0	0.37724	1	30300	30300		2.3027	0.24298	1		+		13711	18892	7692	7692	17399	17399					-0.0020489936848662182
HTYRKYHF	8	Unmodified	_HTYRKYHF_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2920532226562	2	576.290882	1150.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.52	1	114.54	114.04	115.04	0.016708								0	0	0	0.37724	1	29781	29781		2.3027	0.24298	1		+		13712	18892	7692	7692	17400	17400					-0.0020489936848662182
HTYRKYHF	8	Unmodified	_HTYRKYHF_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.293701171875	2	576.290882	1150.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.1	1	115.12	114.62	115.62	0.018738								0	0	0	0.37078	1	29915	29915		5.2307	0.90143	1		+		13713	18892	7692	7692	17401	17401					-0.0020489936848662182
HTYRKYHF	8	Unmodified	_HTYRKYHF_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2928466796875	2	576.290882	1150.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.3	1	115.32	114.82	115.82	0.018738								0	0	0	0.37724	1	29955	29955		2.3027	0.4585	1		+		13714	18892	7692	7692	17402	17402					-0.0020489936848662182
HTYRKYHF	8	Unmodified	_HTYRKYHF_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.291748046875	2	576.290882	1150.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.25	1	116.27	115.77	116.77	0.020988								0	0	0	0.37724	1	30168	30168		2.3027	0.24298	1		+		13715	18892	7692	7692	17403	17403					-0.0020489936848662182
HTYYKFDYK	9	Unmodified	_HTYYKFDYK_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;ENST00000566519.1_1_16:28738032-28738629:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2045593261719	3	422.204751	1263.59242	0.04545	1.9189E-05	-0.018394	-7.7661E-06	0.027056	1.1423E-05	422.20464054157753	30.206	0.81362	30.206	29.888	30.701	0					80	28	4	0	0	0	0.038672	2	5473	5473;5525		57.108	37.482	1	588430			13716	7428	7693	7693	17404;17405	17404					-0.02882889356578744
HTYYKFDYK	9	Unmodified	_HTYYKFDYK_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;ENST00000566519.1_1_16:28738032-28738629:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.20477294921875	3	422.204751	1263.59242	0.05026	2.122E-05	-0.043804	-1.8494E-05	0.0064557	2.7256E-06	422.20463800093677	30.12	0.87559	30.148	29.873	30.749	0.027946					73	30	3	0	0	0	0.063898	2	5505	5453;5505		47.732	28.106	1	458740			13717	7428	7693	7693	17406;17407	17407					-0.02882889356578744
HTYYKFDYK	9	Unmodified	_HTYYKFDYK_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;ENST00000566519.1_1_16:28738032-28738629:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2044982910156	3	422.204751	1263.59242	-0.27435	-0.00011583	0.079897	3.3733E-05	-0.19445	-8.2099E-05	422.20477646821894	30.19	0.9401	30.217	29.698	30.638	0.027159					84	32	4	0	0	0	0.053988	2	5460	5460;5510		51.415	31.789	1	616590			13718	7428	7693	7693	17408;17409	17408					-0.02882889356578744
HVDKNGGF	8	Unmodified	_HVDKNGGF_					0	0	0		ENSG00000141431|ENST00000269197|ASXL3	ENSG00000141431|ENST00000269197|ASXL3	ENSG00000141431|ENST00000269197|ASXL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.5628662109375	2	437.214309	872.414065	-0.12244	-5.3531E-05	0.19042	8.3253E-05	0.067981	2.9722E-05	437.2142277897152	23.335	1.1178	23.247	22.658	23.776	-0.087608					82	39	3	0	0	0	0.34297	1	3491	3491		6.3541	0	1	405770			13719	4377	7694	7694	17410	17410					-0.027245144849416647
HVDLRLNV	8	Unmodified	_HVDLRLNV_					0	0	0		nc|ENSG00000081913|O60346-2|PHLPP1;ENSG00000081913|ENST00000262719|PHLPP1	nc|ENSG00000081913|O60346-2|PHLPP1	nc|ENSG00000081913|O60346-2|PHLPP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.27880859375	2	483.279983	964.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.21	1	85.291	84.791	85.791	0.080887								0	0	0	0.37078	1	22365	22365		5.2307	0.47466	1				13720	1190	7695	7695	17411	17411					0.06172295882936396
HVDLWPFY	8	Unmodified	_HVDLWPFY_					0	0	0		ENSG00000181027|ENST00000318584|FKRP	ENSG00000181027|ENST00000318584|FKRP	ENSG00000181027|ENST00000318584|FKRP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.763916015625	2	538.763635	1075.51272	0.15496	8.3487E-05	-0.0093736	-5.0502E-06	0.14559	7.8437E-05	538.7636666004222	14.664	0.51474	14.559	14.368	14.882	-0.10466					31	17	3	0	0	0	0.34319	1	817	817		5.7604	1.0044	1	101110			13721	7217	7696	7696	17412	17412					-0.02201911239922083
HVFGMTYFK	9	Unmodified	_HVFGMTYFK_					0	0	0		ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1;nc|ENSG00000177675|Q9NR16-3|CD163L1;nc|ENSG00000177675|Q9NR16-2|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.2792358398438	2	565.278595	1128.54264	0.2714	0.00015342	0.81678	0.00046171	1.0882	0.00061512	565.2792437865031	23.635	0.77004	23.562	23.285	24.055	-0.072557					65	26	4	0	0	0	0.21303	2	3486	3486;3533		21.747	21.747	1	263230			13722	7008	7697	7697	17413;17414	17413					-0.01649295566244291
HVFRRAWRK	9	Unmodified	_HVFRRAWRK_					0	0	0		nc|ENSG00000234616|O75564|JRK;ENSG00000234616|ENST00000612905|JRK	nc|ENSG00000234616|O75564|JRK	nc|ENSG00000234616|O75564|JRK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.3831176757812	2	628.36779	1254.72103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.545	1	97.538	97.038	98.038	-0.0068283								0	0	0	0.25631	1	26118	26118		4.3292	0.38484	1				13723	8487	7698	7698	17415	17415					0.10385555187667705
HVGFGFAS	8	Unmodified	_HVGFGFAS_					0	0	0			REV__ENST00000586077.1_1_19:34890117-34890414:+|nuORF	REV__ENST00000586077.1_1_19:34890117-34890414:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2013244628906	2	411.20067	820.386788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.488	1	84.567	84.067	85.067	0.079605								0	0	0	0.37078	1	22144	22144		5.2307	0.90143	1		+		13724	22514	7699	7699	17416	17416					-0.030589980253353133
HVIDKFLLL	9	Unmodified	_HVIDKFLLL_					0	0	0		nc|ENSG00000102032|P51606-3|RENBP;ENSG00000102032|ENST00000393700|RENBP	nc|ENSG00000102032|P51606-3|RENBP	nc|ENSG00000102032|P51606-3|RENBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3151245117188	2	549.33951	1096.66447	0.52381	0.00028775	-1.1877	-0.00065243	-0.66385	-0.00036468	549.3389285480644	63.681	0.3542	63.681	63.443	63.797	0					17	12	2	0	0	0	0.23784	1	15804	15804		19.257	6.7254	1	144620			13725	1738	7700	7700	17417	17417					0.12000069787814027
HVIEMMTLLLK	11	Unmodified	_HVIEMMTLLLK_					0	0	0		ENST00000311275.11_1_20:45838578-45838890:-|nuORF	ENST00000311275.11_1_20:45838578-45838890:-|nuORF	ENST00000311275.11_1_20:45838578-45838890:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.7156677246094	3	443.25406	1326.74035	0.098262	4.3555E-05	0.16675	7.3913E-05	0.26501	0.00011747	443.25398570480996	30.849	1.4695	30.877	30.052	31.521	0.027157					134	52	3	0	0	0	0.33287	1	5885	5885		2.8433	0.21205	1	385090			13726	9315	7701	7701	17418	17418					0.09004962581411746
HVIETLIGK	9	Unmodified	_HVIETLIGK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.3056640625	2	505.305667	1008.59678	0.61807	0.00031231	-0.287	-0.00014502	0.33107	0.00016729	505.3055001734996	37.545	1.6699	37.545	37.233	38.903	0					81	59	2	0	0	0	0.0016712	1	7789	7789		114.2	74.252	1	2583500			13727	4923	7702	7702	17419	17419					0.09282619856992369
HVIETLIGK	9	Unmodified	_HVIETLIGK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.30584716796875	2	505.305667	1008.59678	0.36079	0.00018231	0.19411	9.8086E-05	0.5549	0.00028039	505.3056225975498	37.449	1.7504	37.537	37.218	38.968	0.087406					122	63	2	0	0	0	4.3881E-05	2	7723	7723;7775		149.91	84.679	1	2576600			13728	4923	7702	7702	17420;17421	17420					0.09282619856992369
HVIETLIGK	9	Unmodified	_HVIETLIGK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.3058166503906	2	505.305667	1008.59678	0.34907	0.00017639	0.2217	0.00011203	0.57078	0.00028842	505.3056481107343	37.36	1.7497	37.453	37.197	38.947	0.093014					120	63	2	0	0	0	0.00012108	2	7696	7696;7745		137.42	81.247	1	2478000			13729	4923	7702	7702	17422;17423	17422					0.09282619856992369
HVILPPRP	8	Unmodified	_HVILPPRP_					0	0	0		ENST00000539985.5_1_19:19145022-19148494:+|nuORF	ENST00000539985.5_1_19:19145022-19148494:+|nuORF	ENST00000539985.5_1_19:19145022-19148494:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.22979736328125	2	464.789987	927.565421	-1.3453	-0.00062527	-0.77427	-0.00035987	-2.1195	-0.00098514	464.78930805867674	34.905	0.58926	34.98	34.788	35.377	0.075306					39	20	3	0	0	0	0.34218	1	7018	7018		9.3474	0	1	288990			13730	11714	7703	7703	17424	17424					0.09874091613551172
HVKTPIRDS	9	Unmodified	_HVKTPIRDS_					0	0	0		ENSG00000135094|ENST00000257549|SDS;ENST00000546639.1_1_12:113836911-113837513:-|nuORF;ENST00000553112.5_1_12:113834968-113841579:-|nuORF	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3457641601562	2	526.795998	1051.57744	0.29519	0.0001555	-0.63131	-0.00033257	-0.33612	-0.00017707	526.7954556755502	27.446	0.48833	27.434	27.187	27.675	-0.011562					20	16	2	0	0	0	0.25706	1	4699	4699		6.7232	1.9672	1	73771			13731	3843	7704	7704	17425	17425					0.05371663566097595
HVLEAQDLIAK	11	Unmodified	_HVLEAQDLIAK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.8511352539062	2	618.85097	1235.68739	0.052531	3.2509E-05	0.43946	0.00027196	0.492	0.00030447	618.8510356870135	42.169	0.69515	42.169	41.9	42.595	0					41	24	2	0	0	0	0.0069772	2	9120	9120;9169		76.068	51.077	1	856720			13732	4253	7705	7705	17426;17427	17426					0.07897044114611163
HVLEAQDLIAK	11	Unmodified	_HVLEAQDLIAK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.8509521484375	2	618.85097	1235.68739	0.25115	0.00015542	0.12781	7.9094E-05	0.37895	0.00023452	618.850955869011	41.924	0.71638	42.014	41.853	42.57	0.090248					51	25	3	0	0	0	0.0069772	2	9076	9076;9127		76.068	53.332	1	907100			13733	4253	7705	7705	17428;17429	17428					0.07897044114611163
HVLEAQDLIAK	11	Unmodified	_HVLEAQDLIAK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.8515625	2	618.85097	1235.68739	0.43228	0.00026752	-0.072128	-4.4637E-05	0.36015	0.00022288	618.8507807115482	41.828	0.6757	41.924	41.77	42.446	0.096622					50	23	3	0	0	0	0.010584	1	9067	9067		68.436	51.323	1	864600			13734	4253	7705	7705	17430	17430					0.07897044114611163
HVLEIAALK	9	Unmodified	_HVLEIAALK_					0	0	0		ENSG00000177169|ENST00000321867|ULK1;ENST00000540647.5_1_12:132402872-132405903:+|nuORF;ENST00000544718.1_1_12:132403795-132404230:+|nuORF	ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7818603515625	2	497.30821	992.601866	0.50387	0.00025058	-0.42168	-0.00020971	0.082182	4.087E-05	497.30779305651225	40.224	0.50011	40.224	40.05	40.55	0					29	17	2	0	0	0	0.25202	1	8529	8529		10.824	1.4765	1	140590			13735	6967	7706	7706	17431	17431					0.10526923719612569
HVLEIAALK	9	Unmodified	_HVLEIAALK_					0	0	0		ENSG00000177169|ENST00000321867|ULK1;ENST00000540647.5_1_12:132402872-132405903:+|nuORF;ENST00000544718.1_1_12:132403795-132404230:+|nuORF	ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.30821	992.601866	0.62443	0.00031054	-0.49848	-0.0002479	0.12596	6.264E-05	497.3079631775726	40.122	0.50624	40.215	40.051	40.557	0.09267	-0.0076725	-0.00012547	NaN	10.824	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180710			13736	6967	7706	7706							0.10526923719612569
HVLLAPGV	8	Unmodified	_HVLLAPGV_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2695007324219	2	403.250163	804.485774	0.33744	0.00013607	1.1456	0.00046197	1.4831	0.00059805	403.25090134032666	50.64	0.62475	50.64	50.353	50.978	0					30	22	2	0	0	0	0.34147	1	11800	11800		11.114	4.7604	1	140700			13737	2196	7707	7707	17432	17432					0.0757102493956836
HVLLAPGV	8	Unmodified	_HVLLAPGV_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2694091796875	2	403.250163	804.485774	0.45192	0.00018224	-0.46737	-0.00018847	-0.015448	-6.2294E-06	403.2498882808235	50.522	0.42372	50.567	50.343	50.766	0.044891					20	14	3	0	0	0	0.34297	1	11734	11734		6.3541	0	1	128200			13738	2196	7707	7707	17433	17433					0.0757102493956836
HVLMPPLA	8	Unmodified	_HVLMPPLA_					0	0	0			REV__ENST00000536158.5_1_11:63991868-63992278:-|nuORF	REV__ENST00000536158.5_1_11:63991868-63992278:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.25244140625	2	439.251849	876.489145	0.052723	2.3159E-05	1.4363	0.00063088	1.489	0.00065404	439.2523508396849	80.524	0.91114	80.524	80.267	81.178	0					64	40	2	0	0	0	0.45851	1	20954	20954		2.8892	0.58649	1	749440	+		13739	16482	7708	7708	17434	17434					0.04595951721910296
HVLPGRPLL	9	Unmodified	_HVLPGRPLL_					0	0	0		ENST00000564785.5_1_15:75650790-75651240:-|nuORF	ENST00000564785.5_1_15:75650790-75651240:-|nuORF	ENST00000564785.5_1_15:75650790-75651240:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2573547363281	2	501.316369	1000.61818	0.33431	0.00016759	-1.1982	-0.00060065	-0.86384	-0.00043306	501.31567623576495	66.998	0.56524	66.998	66.744	67.309	0					28	19	2	0	0	0	0.25066	1	16731	16731		11.64	2.2929	1	178450			13740	11956	7709	7709	17435	17435					0.11790049676358194
HVLQKKKKH	9	Unmodified	_HVLQKKKKH_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;ENST00000554135.1_1_14:97014159-97018960:+|nuORF	ENSG00000090060|ENST00000216277|PAPOLA	ENSG00000090060|ENST00000216277|PAPOLA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.36767578125	2	573.366924	1144.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.719	1	41.809	41.309	42.309	0.090252								0	0	0	0.264	1	9020	9020		1.8442	0.19162	1				13741	1369	7710	7710	17436	17436					0.15272501379058667
HVLRTDFL	8	Unmodified	_HVLRTDFL_					0	0	0		nc|ENSG00000164270|Q13639-8|HTR4	nc|ENSG00000164270|Q13639-8|HTR4	nc|ENSG00000164270|Q13639-8|HTR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2852478027344	2	500.782359	999.550165	0.092285	4.6215E-05	3.6878	0.0018468	3.7801	0.001893	501.2855299235364	31.404	0.54632	31.446	31.106	31.652	0.042364					56	19	5	0	0	0	0.43758	1	5860	5860		10.074	0.6908	1	270160			13742	12802	7711	7711	17437	17437					0.05037180025692578
HVLSVRIKG	9	Unmodified	_HVLSVRIKG_					0	0	0		ENST00000520372.5_1_1:26655223-26662846:-|nuORF;ENSG00000176092|ENST00000308182|CRYBG2	ENST00000520372.5_1_1:26655223-26662846:-|nuORF	ENST00000520372.5_1_1:26655223-26662846:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.30572509765625	2	504.819276	1007.624	0.7283	0.00036766	-1.9302	-0.00097442	-1.2019	-0.00060676	504.818130081773	37.283	0.36102	37.283	37.063	37.424	0					17	12	2	0	0	0	0.23783	1	7698	7698		12.532	4.9226	1	135150			13743	6901	7712	7712	17438	17438					0.12049148188032177
HVPDELVSGF	10	Unmodified	_HVPDELVSGF_					0	0	0			REV__nc|ENSG00000058262|P61619-3|SEC61A1	REV__nc|ENSG00000058262|P61619-3|SEC61A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.30078125	2	550.274564	1098.53457	0.46568	0.00025625	3.2848	0.0018075	3.7505	0.0020638	550.276040380214	63.482	0.75792	63.482	63.039	63.797	0					63	27	4	0	0	0	0.27772	1	15780	15780		26.884	3.7352	1	345500	+		13744	13606	7713	7713	17439	17439					-0.010751512820206699
HVPEHAVVL	9	Unmodified	_HVPEHAVVL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3133239746094	2	500.782359	999.550165	0.21079	0.00010556	1.2672	0.0006346	1.478	0.00074016	500.7829443301247	30.922	0.88142	30.949	30.612	31.493	0.027157					44	31	2	0	0	0	0.2451	1	5673	5673		15.847	5.7733	1	138220			13745	6378	7714	7714	17440	17440					0.050371800257153154
HVPVEGSEQLK	11	Unmodified	_HVPVEGSEQLK_					0	0	0			REV__ENSG00000111052|ENST00000552864|LIN7A	REV__ENSG00000111052|ENST00000552864|LIN7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.88055419921875	3	408.21906	1221.63535	-0.38795	-0.00015837	0.47265	0.00019295	0.084706	3.4579E-05	408.2192058852064	28.219	1.6025	28.219	27.615	29.218	0					129	56	3	0	0	0	0.32017	1	5038	5038		12.228	1.7001	1	3756700	+		13746	14700	7715	7715	17441	17441					0.03339880700855247
HVQDVGAPK	9	Unmodified	_HVQDVGAPK_					0	0	0		nc|ENSG00000070476|Q2QGD7-3|ZXDC;nc|ENSG00000070476|Q2QGD7-2|ZXDC;ENSG00000070476|ENST00000389709|ZXDC	nc|ENSG00000070476|Q2QGD7-3|ZXDC	nc|ENSG00000070476|Q2QGD7-3|ZXDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.75634765625	2	475.756341	949.498129	-0.16211	-7.7123E-05	0.023354	1.1111E-05	-0.13875	-6.6012E-05	475.756229575264	14.546	0.42349	14.546	14.365	14.789	0					26	14	2	0	0	0	0.20626	1	763	763		22.736	10.205	1	93567			13747	928	7716	7716	17442	17442					0.021360166119507085
HVQDVGAPK	9	Unmodified	_HVQDVGAPK_					0	0	0		nc|ENSG00000070476|Q2QGD7-3|ZXDC;nc|ENSG00000070476|Q2QGD7-2|ZXDC;ENSG00000070476|ENST00000389709|ZXDC	nc|ENSG00000070476|Q2QGD7-3|ZXDC	nc|ENSG00000070476|Q2QGD7-3|ZXDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7563781738281	2	475.756341	949.498129	-0.021681	-1.0315E-05	-0.0065768	-3.129E-06	-0.028258	-1.3444E-05	475.756309974898	14.662	0.3739	14.557	14.396	14.77	-0.10466					22	12	2	0	0	0	0.23749	1	799	799		20.415	11.031	1	82631			13748	928	7716	7716	17443	17443					0.021360166119507085
HVQDVGAPK	9	Unmodified	_HVQDVGAPK_					0	0	0		nc|ENSG00000070476|Q2QGD7-3|ZXDC;nc|ENSG00000070476|Q2QGD7-2|ZXDC;ENSG00000070476|ENST00000389709|ZXDC	nc|ENSG00000070476|Q2QGD7-3|ZXDC	nc|ENSG00000070476|Q2QGD7-3|ZXDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7560729980469	2	475.756341	949.498129	-0.07511	-3.5734E-05	0.084109	4.0015E-05	0.0089986	4.2811E-06	475.75624462403357	14.659	0.46945	14.593	14.4	14.869	-0.066068					26	16	2	0	0	0	0.18208	1	800	800		26.268	12.362	1	80682			13749	928	7716	7716	17444	17444					0.021360166119507085
HVQEIRHRT	9	Unmodified	_HVQEIRHRT_					0	0	0			REV__ENST00000521938.5_1_8:27950677-27967964:+|nuORF	REV__ENST00000521938.5_1_8:27950677-27967964:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.322998046875	2	588.323245	1174.63194	0.045496	2.6766E-05	-0.28835	-0.00016964	-0.24286	-0.00014288	588.3229618265744	12.311	0.26174	12.214	12.122	12.384	-0.096606					19	8	3	0	0	0	0.34681	1	107	107		1.8442	0	1	93527	+		13750	21909	7717	7717	17445	17445					0.05160675437491591
HVQEIRHRT	9	Unmodified	_HVQEIRHRT_					0	0	0			REV__ENST00000521938.5_1_8:27950677-27967964:+|nuORF	REV__ENST00000521938.5_1_8:27950677-27967964:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	588.323245	1174.63194	0.045496	2.6766E-05	-0.28835	-0.00016964	-0.24286	-0.00014288	588.3229618265744	12.311	0.26174	12.214	12.122	12.384	-0.096606	-0.024311	-0.00032659	NaN	1.8442	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93527	+		13751	21909	7717	7717							0.05160675437491591
HVQEIRHRT	9	Unmodified	_HVQEIRHRT_					0	0	0			REV__ENST00000521938.5_1_8:27950677-27967964:+|nuORF	REV__ENST00000521938.5_1_8:27950677-27967964:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	588.323245	1174.63194	-0.075483	-4.4408E-05	0.31451	0.00018503	0.23903	0.00014063	588.3231851241986	12.331	0.26665	12.263	12.167	12.434	-0.06806	0.024311	0.00038277	NaN	1.8442	22	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85194	+		13752	21909	7717	7717							0.05160675437491591
HVQIFRNGM	9	Unmodified	_HVQIFRNGM_					0	0	0			REV__ENSG00000244462|ENST00000374114|RBM12	REV__ENSG00000244462|ENST00000374114|RBM12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7980346679688	2	551.284743	1100.55493	0.042264	2.33E-05	1.3528	0.00074579	1.3951	0.00076909	551.2858109355946	13.361	0.20034	13.361	13.227	13.427	0					9	6	2	0	0	0	0.26168	1	413	413		1.8442	0.36234	1	13951	+		13753	19202	7718	7718	17446	17446					0.008677408968196687
HVQQGVYAV	9	Unmodified	_HVQQGVYAV_					0	0	0			REV__ENST00000524544.1_1_11:80364480-80364744:-|nuORF	REV__ENST00000524544.1_1_11:80364480-80364744:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.3008728027344	2	500.764166	999.513779	0.19196	9.6127E-05	3.5852	0.0017953	3.7771	0.0018915	500.7662534940341	22.521	0.48601	22.521	22.222	22.708	0					22	16	2	0	0	0	0.25938	1	3217	3217		4.3292	1.7518	1	27265	+		13754	21941	7719	7719	17447	17447					0.014003031290030776
HVQQNRAVL	9	Unmodified	_HVQQNRAVL_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.8140258789062	2	532.801614	1063.58868	0.41889	0.00022319	-0.063996	-3.4097E-05	0.3549	0.00018909	532.8016545138124	17.793	0.36292	17.793	17.628	17.991	0					18	11	2	0	0	0	0.28128	1	1715	1715		11.64	2.8949	1	50526			13755	1550	7720	7720	17448	17448					0.05942485660239072
HVRERGEMPL	10	Unmodified	_HVRERGEMPL_					0	0	0			REV__ENST00000263093.6_2_19:59010515-59011725:-|nuORF	REV__ENST00000263093.6_2_19:59010515-59011725:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.8874206542969	3	408.548635	1222.62407	-0.33726	-0.00013779	0.26753	0.0001093	-0.069727	-2.8487E-05	408.5489752056169	13.803	0.50459	13.698	13.487	13.991	-0.10466					25	17	2	0	0	0	0.32162	1	481	481		0.77653	0	1	27721	+		13756	19614	7721	7721	17449	17449					0.021667801257308383
HVRMMIDL	8	Unmodified	_HVRMMIDL_					0	0	0			REV__ENST00000521168.5_1_8:68070723-68107652:+|nuORF	REV__ENST00000521168.5_1_8:68070723-68107652:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.27978515625	2	507.764797	1013.51504	-0.041987	-2.1319E-05	-1.28	-0.00064996	-1.322	-0.00067128	507.7641676471281	14.479	0.38496	14.413	14.231	14.616	-0.066068					34	13	3	0	0	0	0.43302	1	771	771		11.64	2.2572	1	167080	+		13757	21897	7722	7722	17450	17450					0.008824779018937079
HVRQHLIFSN	10	Unmodified	_HVRQHLIFSN_					0	0	0			REV__ENST00000599145.1_1_19:58928113-58929148:+|nuORF	REV__ENST00000599145.1_1_19:58928113-58929148:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.91436767578125	3	417.563273	1249.66799	0.11823	4.937E-05	-2.6635	-0.0011122	-2.5453	-0.0010628	417.56220254459623	16.546	0.46841	16.483	16.177	16.646	-0.062534					20	15	2	0	0	0	0.32034	1	1277	1277		4.7159	0.30977	1	38476	+		13758	17653	7723	7723	17451	17451					0.053141326143759215
HVSFWDVHSL	10	Unmodified	_HVSFWDVHSL_					0	0	0			REV__MCAM|p.E313Nfs*16|1|0.22|ENSG00000076706|chr11:119312353-119312353|C/-|frameshift_variant	REV__MCAM|p.E313Nfs*16|1|0.22|ENSG00000076706|chr11:119312353-119312353|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.60797119140625	3	409.536612	1225.58801	0.018469	7.5638E-06	-0.0059383	-2.4319E-06	0.012531	5.1319E-06	409.5365587552753	52.978	0.45764	52.978	52.743	53.201	0					31	16	3	0	0	0	0.31942	1	12520	12520		6.1918	6.1918	1	412630	+		13759	22853	7724	7724	17452	17452					-0.015763537794782678
HVSFWDVHSL	10	Unmodified	_HVSFWDVHSL_					0	0	0			REV__MCAM|p.E313Nfs*16|1|0.22|ENSG00000076706|chr11:119312353-119312353|C/-|frameshift_variant	REV__MCAM|p.E313Nfs*16|1|0.22|ENSG00000076706|chr11:119312353-119312353|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	409.536612	1225.58801	0.36313	0.00014871	-0.50138	-0.00020533	-0.13826	-5.6621E-05	409.53642998900864	52.912	0.42061	52.966	52.77	53.191	0.053928	-0.083111	-0.0003328	NaN	6.1918	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261650	+		13760	22853	7724	7724							-0.015763537794782678
HVSGEQLSQL	10	Unmodified	_HVSGEQLSQL_					0	0	0		ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.3005981445312	2	549.28292	1096.55129	0.7856	0.00043152	-2.0154	-0.001107	-1.2298	-0.00067551	549.2816895185838	60.723	0.68128	60.723	60.255	60.936	0					70	24	5	0	0	0	0.2811	1	14884	14884		22.736	3.4793	1	2427900			13761	5035	7725	7725	17453	17453					0.006873496039816018
HVTMSSLLNT	10	Unmodified	_HVTMSSLLNT_					0	0	0		nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.3012084960938	2	551.781699	1101.54884	0.58066	0.0003204	-0.68823	-0.00037975	-0.10758	-5.9358E-05	552.2828124376229	60.526	0.71561	60.623	60.294	61.01	0.096985					37	25	2	0	0	0	0.23848	1	14901	14901		37.974	1.847	1	601590			13762	7979	7726	7726	17454	17454					0.0021317787463885907
HVTSRGTKV	9	Unmodified	_HVTSRGTKV_					0	0	0			REV__nc|ENSG00000273540|Q96MI9|AGBL1	REV__nc|ENSG00000273540|Q96MI9|AGBL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.7594909667969	2	492.78289	983.551228	0.02028	9.9936E-06	0.14108	6.9522E-05	0.16136	7.9516E-05	492.78283500888097	12.646	0.28854	12.646	12.526	12.815	0					14	9	2	0	0	0	0.25879	1	223	223		4.756	1.8668	1	60681	+		13763	19320	7727	7727	17455	17455					0.05879394394617066
HVVHHKSLH	9	Unmodified	_HVVHHKSLH_					0	0	0			REV__ENSG00000261221|ENST00000568956|ZNF865	REV__ENSG00000261221|ENST00000568956|ZNF865	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.3065795898438	2	547.304324	1092.5941	0.097772	5.3511E-05	2.0385	0.0011157	2.1363	0.0011692	547.3061352726672	13.181	0.7378	13.181	13.003	13.74	0					64	25	5	0	0	0	0.35512	1	340	340		0.6015	0	1	1308800	+		13764	19282	7728	7728	17456	17456					0.051502092427199386
HVVLHRRV	8	Unmodified	_HVVLHRRV_					0	0	0			REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1	REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7884521484375	2	508.317235	1014.61992	-0.0046062	-2.3414E-06	-1.3	-0.00066083	-1.3046	-0.00066318	508.31663820661225	13.857	0.16521	13.857	13.767	13.932	0					6	5	2	0	0	0	0.34434	1	549	549		0.79363	0.19213	1	13862	+		13765	15013	7729	7729	17457	17457					0.11319103484981952
HVVQRPPSWV	10	Unmodified	_HVVQRPPSWV_					0	0	0			REV__ENST00000463083.1_2_6:34214582-34214708:-|nuORF	REV__ENST00000463083.1_2_6:34214582-34214708:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.833251953125	2	602.832914	1203.65128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.598	1	96.668	96.168	97.168	0.070465								0	0	0	0.37739	1	25824	25824		3.2813	0.28607	1		+		13766	21244	7730	7730	17458	17458					0.057596317284151155
HVVQRPPSWV	10	Unmodified	_HVVQRPPSWV_					0	0	0			REV__ENST00000463083.1_2_6:34214582-34214708:-|nuORF	REV__ENST00000463083.1_2_6:34214582-34214708:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8346557617188	2	602.832914	1203.65128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.87	1	96.865	96.365	97.365	-0.0055466								0	0	0	0.37739	1	25916	25916		3.2813	0.28607	1		+		13767	21244	7730	7730	17459	17459					0.057596317284151155
HVVVITREV	9	Unmodified	_HVVVITREV_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3406372070312	2	526.316566	1050.61858	0.66457	0.00034977	-0.21266	-0.00011193	0.45191	0.00023785	526.3162650464802	45.577	0.77705	45.642	45.199	45.976	0.065048					49	28	3	0	0	0	0.25323	1	10074	10074		10.074	2.7847	1	550920			13768	6725	7731	7731	17460	17460					0.09529424605557324
HVVVITREV	9	Unmodified	_HVVVITREV_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	526.316566	1050.61858	0.60511	0.00031848	-0.83237	-0.00043809	-0.22725	-0.00011961	526.315673693122	45.551	0.73296	45.611	45.282	46.015	0.059837	-0.035985	-0.00049291	NaN	10.074	45	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	505330			13769	6725	7731	7731							0.09529424605557324
HVWAGGPWPQ	10	Unmodified	_HVWAGGPWPQ_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.77783203125	2	567.777608	1133.54066	0.17551	9.9652E-05	-0.79067	-0.00044893	-0.61516	-0.00034928	567.7772271882628	17.728	1.0619	17.667	17.051	18.113	-0.060429					69	37	2	0	0	0	0.40992	1	1755	1755		1.6526	0.85899	1	100230			13770	6727	7732	7732	17461	17461					-0.020765882598198004
HVWLLQRR	8	Unmodified	_HVWLLQRR_					0	0	0		ENST00000370641.3_1_1:84967597-84971964:-|nuORF	ENST00000370641.3_1_1:84967597-84971964:-|nuORF	ENST00000370641.3_1_1:84967597-84971964:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.33056640625	2	554.330342	1106.64613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.1	1	114.08	113.58	114.58	-0.019096								0	0	0	0.37992	1	29640	29640		0.79363	0.19213	1				13771	9803	7733	7733	17462	17462					0.09707372656475854
HVWLLQRR	8	Unmodified	_HVWLLQRR_					0	0	0		ENST00000370641.3_1_1:84967597-84971964:-|nuORF	ENST00000370641.3_1_1:84967597-84971964:-|nuORF	ENST00000370641.3_1_1:84967597-84971964:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.80419921875	2	554.330342	1106.64613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.76	1	116.78	116.28	117.28	0.020988								0	0	0	0.37992	1	30287	30287		0.79363	0.19213	1				13772	9803	7733	7733	17463	17463					0.09707372656475854
HVYELLNTI	9	Unmodified	_HVYELLNTI_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.3005981445312	2	551.300581	1100.58661	0.52576	0.00028985	-0.094047	-5.1848E-05	0.43172	0.00023801	551.3000526668914	60.928	2.142	60.928	60.469	62.611	0					126	79	3	0	0	0	0.0016361	2	14934	14934;14989		114.65	45.544	1	2278200			13773	3097	7734	7734	17464;17465	17464					0.04034012131774034
HVYELLNTI	9	Unmodified	_HVYELLNTI_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.3014526367188	2	551.300581	1100.58661	0.62993	0.00034728	0.11853	6.5346E-05	0.74846	0.00041263	551.3005317125888	60.863	0.90581	60.96	60.449	61.354	0.096985					78	32	4	0	0	0	0.0033114	1	14964	14964		99.799	49.866	1	1767200			13774	3097	7734	7734	17466	17466					0.04034012131774034
HVYELLNTI	9	Unmodified	_HVYELLNTI_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.3005981445312	2	551.300581	1100.58661	0.54392	0.00029986	-0.25359	-0.0001398	0.29033	0.00016006	551.3001319515342	60.939	1.9223	60.93	60.461	62.383	-0.0094566					114	70	4	0	0	0	0.0016361	2	14940	14940;15004		114.65	45.544	1	2409500			13775	3097	7734	7734	17467;17468	17467					0.04034012131774034
HVYQIKNIF	9	Unmodified	_HVYQIKNIF_					0	0	0			REV__ENSG00000167654|ENST00000450849|ATCAY	REV__ENSG00000167654|ENST00000450849|ATCAY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.290283203125	2	581.324391	1160.63423	0.50798	0.0002953	0.11183	6.501E-05	0.61981	0.00036031	581.3243962915149	48.702	0.33515	48.746	48.571	48.906	0.044891					18	11	2	0	0	0	0.24913	1	11209	11209		7.9102	0	1	332730	+		13776	17399	7735	7735	17469	17469					0.06033711122586283
HVYQIKNIF	9	Unmodified	_HVYQIKNIF_					0	0	0			REV__ENSG00000167654|ENST00000450849|ATCAY	REV__ENSG00000167654|ENST00000450849|ATCAY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.290283203125	2	581.324391	1160.63423	0.33249	0.00019329	0.29522	0.00017162	0.62771	0.0003649	581.324564244606	48.65	0.38282	48.682	48.522	48.904	0.032043					17	13	2	0	0	0	0.24913	1	11131	11131		12.532	1.7076	1	310060	+		13777	17399	7735	7735	17470	17470					0.06033711122586283
HVYRERFPK	9	Unmodified	_HVYRERFPK_					0	0	0		nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3;ENST00000608648.1_1_19:18220994-18239762:+|nuORF	nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000099308|O60307|MAST3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2276306152344	3	411.228001	1230.66217	-0.10497	-4.3165E-05	-0.57156	-0.00023504	-0.67653	-0.00027821	411.2277013316987	17.618	0.67324	17.618	17.318	17.991	0					51	22	3	0	0	0	0.25714	1	1697	1697		15.248	6.8042	1	112040			13778	1482	7736	7736	17471	17471					0.05607034102695252
HVYRERFPK	9	Unmodified	_HVYRERFPK_					0	0	0		nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3;ENST00000608648.1_1_19:18220994-18239762:+|nuORF	nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000099308|O60307|MAST3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.5840759277344	3	411.228001	1230.66217	-0.027	-1.1103E-05	-0.85022	-0.00034964	-0.87722	-0.00036074	411.22761141033243	17.838	0.60058	17.721	17.489	18.089	-0.11739					47	20	3	0	0	0	0.25938	1	1711	1711		8.1555	5.657	1	115170			13779	1482	7736	7736	17472	17472					0.05607034102695252
HVYRNFFNK	9	Unmodified	_HVYRNFFNK_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.8805847167969	3	408.880602	1223.61998	-0.10326	-4.2222E-05	1.1304	0.0004622	1.0271	0.00041997	409.215761422388	28.393	1.2912	28.389	28.024	29.315	-0.0042572					160	45	5	0	0	0	0.0046246	1	5039	5039		89.401	68.53	1	2656400			13780	3825	7737	7737	17473	17473					0.01711058694309031
HVYRNFFNK	9	Unmodified	_HVYRNFFNK_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.8810119628906	3	408.880602	1223.61998	-0.16558	-6.7704E-05	0.419	0.00017132	0.25342	0.00010362	408.88058192425575	29.557	0.55243	29.57	29.39	29.943	0.013474					27	18	2	0	0	0	0.22935	1	5324	5324		19.362	2.5236	1	160320			13781	3825	7737	7737	17474	17474					0.01711058694309031
HVYSRQHSM	9	Unmodified	_HVYSRQHSM_					0	0	0		ENST00000413111.5_2_2:74606054-74607164:-|nuORF	ENST00000413111.5_2_2:74606054-74607164:-|nuORF	ENST00000413111.5_2_2:74606054-74607164:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3026733398438	2	572.769457	1143.52436	0.52475	0.00030056	0.17943	0.00010277	0.70418	0.00040333	572.7691580773511	37.712	0.44281	37.712	37.452	37.895	0					22	15	2	0	0	0	0.2451	1	7728	7728		15.847	1.9411	1	151790			13782	10285	7738	7738	17475	17475					-0.041660374882212636
HVYVGNISK	9	Unmodified	_HVYVGNISK_					0	0	0		ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	ENSG00000164151|ENST00000296564|ICE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.77972412109375	2	508.779816	1015.54508	0.18682	9.5051E-05	0.43652	0.00022209	0.62334	0.00031714	508.7801039783915	22.322	0.54351	22.322	22.105	22.649	0					22	18	2	0	0	0	0.27726	1	3134	3134		12.241	4.3305	1	93565			13783	5800	7739	7739	17476	17476					0.03792876163095116
HWDQDDDFE	9	Unmodified	_HWDQDDDFE_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.7196044921875	2	603.72035	1205.42615	0.55648	0.00033596	-1.7414	-0.0010513	-1.1849	-0.00071536	603.7191575172482	83.505	0.46839	83.488	83.23	83.698	-0.01683					29	19	2	0	0	0	0.34536	1	21826	21826		2.0598	0	1	161520			13784	310	7740	7740	17477	17477					-0.168349873230909
HWDQDDDFE	9	Unmodified	_HWDQDDDFE_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	603.72035	1205.42615	0.76227	0.0004602	-2.5586	-0.0015446	-1.7963	-0.0010845	603.7188372234637	83.431	0.38986	83.431	83.321	83.711	0	-0.027696	-0.00079907	NaN	2.0598	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143840			13785	310	7740	7740							-0.168349873230909
HWDQDDDFE	9	Unmodified	_HWDQDDDFE_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	603.72035	1205.42615	0.67373	0.00040674	-1.6443	-0.00099269	-0.97057	-0.00058595	603.7190355747222	83.383	0.4547	83.458	83.241	83.696	0.074852	-0.0012314	0.00030484	NaN	2.0598	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124200			13786	310	7740	7740							-0.168349873230909
HWEPIIRE	8	Unmodified	_HWEPIIRE_					0	0	0			REV__ENST00000399262.6_1_10:64968217-64968298:-|nuORF	REV__ENST00000399262.6_1_10:64968217-64968298:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2857666015625	2	540.285266	1078.55598	0.5416	0.00029262	-0.058437	-3.1573E-05	0.48316	0.00026105	540.2853401683493	80.992	0.58778	80.965	80.704	81.291	-0.026825					41	24	2	0	0	0	0.42077	1	21074	21074		15.847	3.3156	1	722430	+		13787	20688	7741	7741	17478	17478					0.019842785373839433
HWFPIFNP	8	Unmodified	_HWFPIFNP_					0	0	0		ENSG00000151388|ENST00000504830|ADAMTS12;nc|ENSG00000151388|P58397-3|ADAMTS12;ADAMTS12|p.Q1343Hfs*4|1|0.49|ENSG00000151388|chr5:33561122-33561123|TC/-|frameshift_variant	ENSG00000151388|ENST00000504830|ADAMTS12	ENSG00000151388|ENST00000504830|ADAMTS12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2645874023438	2	529.266345	1056.51814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.358	1	99.351	98.851	99.851	-0.006897								0	0	0	0.37078	1	26613	26613		5.2307	0.47466	1				13788	4960	7742	7742	17479	17479					-0.007861876574452253
HWKEESWSK	9	Unmodified	_HWKEESWSK_					0	0	0			REV__ENSG00000101074|ENST00000217043|R3HDML	REV__ENSG00000101074|ENST00000217043|R3HDML	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.8889465332031	3	406.196367	1215.56727	-0.26506	-0.00010767	2.8878	0.001173	2.6228	0.0010654	406.1987459327198	18.028	0.14545	17.911	17.84	17.985	-0.11739					5	4	2	0	0	0	0.25938	1	1831	1831		2.4985	0.75621	1	14048	+		13789	14245	7743	7743	17480	17480					-0.03188944159160201
HWKELEAR	8	Unmodified	_HWKELEAR_					0	0	0			REV__ENSG00000133789|ENST00000318950|SWAP70	REV__ENSG00000133789|ENST00000318950|SWAP70	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.8102416992188	2	534.78289	1067.55123	0.32602	0.00017435	-2.9707	-0.0015887	-2.6447	-0.0014143	534.7813716023327	33.276	0.33426	33.343	33.187	33.522	0.066704					19	11	2	0	0	0	0.34039	1	6398	6398		15.847	7.937	1	238490	+		13790	15636	7744	7744	17481	17481					0.02015394394584291
HWKELEAR	8	Unmodified	_HWKELEAR_					0	0	0			REV__ENSG00000133789|ENST00000318950|SWAP70	REV__ENSG00000133789|ENST00000318950|SWAP70	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	534.78289	1067.55123	0.48937	0.00026171	-3.4479	-0.0018439	-2.9586	-0.0015822	534.7811712048422	33.43	0.38686	33.43	33.259	33.646	0	0.060619	-0.00015562	NaN	15.847	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181120	+		13791	15636	7744	7744							0.02015394394584291
HWLFWPLL	8	Unmodified	_HWLFWPLL_					0	0	0			REV__ENST00000321725.10_1_3:52549009-52550096:+|nuORF	REV__ENST00000321725.10_1_3:52549009-52550096:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2576293945312	2	556.308013	1110.60147	0.29393	0.00016352	0.56194	0.00031261	0.85587	0.00047613	556.3081756519304	80.655	2.6143	80.655	79.467	82.081	0					213	108	2	0	0	0	0.34297	1	20677	20677		6.3541	6.3541	1	664990	+		13792	19970	7745	7745	17482	17482					0.05059548790404733
HWLFWPLL	8	Unmodified	_HWLFWPLL_					0	0	0			REV__ENST00000321725.10_1_3:52549009-52550096:+|nuORF	REV__ENST00000321725.10_1_3:52549009-52550096:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8214721679688	2	556.308013	1110.60147	0.1632	9.0789E-05	0.7234	0.00040243	0.8866	0.00049322	556.3082798674587	80.361	2.4792	80.426	79.622	82.101	0.065094					209	106	2	0	0	0	0.43455	1	21363	21363		11.114	11.114	1	805360	+		13793	19970	7745	7745	17483	17483					0.05059548790404733
HWPCCCPA	8	Unmodified	_HWPCCCPA_					0	0	0		ENST00000368874.8_2_1:151264779-151264956:-|nuORF	ENST00000368874.8_2_1:151264779-151264956:-|nuORF	ENST00000368874.8_2_1:151264779-151264956:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7892761230469	2	458.666769	915.318984	0.32399	0.0001486	-1.1055	-0.00050704	-0.78147	-0.00035843	458.6664624552636	65.996	0.90369	66.08	65.834	66.738	0.083832					97	32	6	0	0	0	0.34434	1	16657	16657		0.79363	0.79363	1	681520			13794	9770	7746	7746	17484	17484					-0.14206230543675247
HWPCCCPA	8	Unmodified	_HWPCCCPA_					0	0	0		ENST00000368874.8_2_1:151264779-151264956:-|nuORF	ENST00000368874.8_2_1:151264779-151264956:-|nuORF	ENST00000368874.8_2_1:151264779-151264956:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	458.666769	915.318984	0.28583	0.0001311	-0.41708	-0.0001913	-0.13126	-6.0203E-05	458.6664592137994	66.165	0.75529	66.165	65.845	66.6	0	0.039892	5.9648E-05	NaN	0.79363	61	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	588620			13795	9770	7746	7746							-0.14206230543675247
HWPCCCPA	8	Unmodified	_HWPCCCPA_					0	0	0		ENST00000368874.8_2_1:151264779-151264956:-|nuORF	ENST00000368874.8_2_1:151264779-151264956:-|nuORF	ENST00000368874.8_2_1:151264779-151264956:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	458.666769	915.318984	0.22627	0.00010378	-0.33626	-0.00015423	-0.10999	-5.0448E-05	458.6665145233038	66.144	0.83723	66.131	65.797	66.634	-0.013588	0.0054949	0.00013379	NaN	0.79363	80	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	704040			13796	9770	7746	7746							-0.14206230543675247
HWRSTVGKVGR	11	Unmodified	_HWRSTVGKVGR_					0	0	0			REV__ENSG00000140986|ENST00000268661|RPL3L	REV__ENSG00000140986|ENST00000268661|RPL3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8817749023438	2	641.859995	1281.70544	0.25619	0.00016444	-1.0415	-0.00066848	-0.78528	-0.00050404	641.8589524141933	117.77	0.17834	117.75	117.68	117.86	-0.024147					32	21	2	0	0	0	0.3327	1	30474	30474		2.7352	0.23671	1	19005	+		13797	16060	7747	7747	17485	17485					0.0758522387998255
HWSDVLAGF	9	Unmodified	_HWSDVLAGF_					0	0	0		nc|ENSG00000105520|Q96GM1-2|PLPPR2;ENSG00000105520|ENST00000688289|PLPPR2;ENST00000588360.1_1_19:11471945-11474676:+|nuORF;nc|ENSG00000105520|Q96GM1|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2507934570312	2	516.250892	1030.48723	0.26739	0.00013804	-0.3927	-0.00020273	-0.12532	-6.4695E-05	516.2507772903052	42.814	1.1374	42.814	42.465	43.602	0					98	41	4	0	0	0	0.20344	1	9413	9413		23.148	0	1	1516300			13798	1990	7748	7748	17486	17486					-0.026793857623488293
HYAALAHYF	9	Unmodified	_HYAALAHYF_					0	0	0		nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF	nc|ENSG00000131941|Q8IUC4-2|RHPN2	nc|ENSG00000131941|Q8IUC4-2|RHPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.7664184570312	2	546.766709	1091.51886	0.37409	0.00020454	-0.8919	-0.00048766	-0.51781	-0.00028312	546.7660739673285	46.146	1.9667	46.146	45.805	47.771	0					179	70	4	0	0	0	0.00070004	2	10337	10337;10388		126.6	88.449	1	3973300			13799	3598	7749	7749	17487;17488	17487					-0.023233930084188614
HYAKIAADF	9	Unmodified	_HYAKIAADF_					0	0	0		nc|ENSG00000120694|Q92598-4|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1	nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-4|HSPH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.324462890625	2	518.266542	1034.51853	0.037364	1.9365E-05	0.18668	9.6748E-05	0.22404	0.00011611	518.2666414751586	35.443	0.81457	35.443	35.118	35.932	0					39	29	2	0	0	0	0.14646	1	7070	7070		43.772	18.373	1	255560			13800	12680	7750	7750	17489	17489					0.0026518727172515355
HYAKIAADF	9	Unmodified	_HYAKIAADF_					0	0	0		nc|ENSG00000120694|Q92598-4|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1	nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-4|HSPH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3246459960938	2	518.266542	1034.51853	-0.098566	-5.1084E-05	0.16368	8.4831E-05	0.065117	3.3748E-05	518.266526734642	35.229	0.4627	35.304	35.071	35.533	0.075306					29	16	2	0	0	0	0.16853	1	7079	7079		38.176	16.429	1	253540			13801	12680	7750	7750	17490	17490					0.0026518727172515355
HYAKIAADF	9	Unmodified	_HYAKIAADF_					0	0	0		nc|ENSG00000120694|Q92598-4|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1	nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-4|HSPH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.324462890625	2	518.266542	1034.51853	-0.34508	-0.00017884	0.46847	0.00024279	0.12339	6.3949E-05	518.2668760206162	35.231	0.7207	35.308	35.06	35.781	0.077381					45	25	3	0	0	0	0.15943	1	7016	7016		39.95	18.203	1	287490			13802	12680	7750	7750	17491	17491					0.0026518727172515355
HYAKLNFVI	9	Unmodified	_HYAKLNFVI_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7720336914062	2	552.813659	1103.61277	0.69201	0.00038255	0.0053603	2.9633E-06	0.69737	0.00038552	552.8136774833913	50.795	0.80595	50.804	50.567	51.373	0.0095673					51	30	2	0	0	0	0.20651	1	11847	11847		26.884	12.978	1	218000			13803	7924	7751	7751	17492	17492					0.06510326093894037
HYANIGKTL	9	Unmodified	_HYANIGKTL_					0	0	0		nc|ENSG00000115841|Q96LZ7-3|RMDN2;ENST00000440353.5_1_2:38177721-38224681:+|nuORF;nc|ENSG00000115841|Q96LZ7-4|RMDN2;ENSG00000115841|ENST00000354545|RMDN2;nc|ENSG00000115841|Q96LZ7-2|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.80255126953125	2	508.779816	1015.54508	-0.051605	-2.6255E-05	-0.62224	-0.00031659	-0.67385	-0.00034284	508.77935904669295	28.012	0.45217	28.012	27.789	28.241	0					32	15	3	0	0	0	0.15943	1	4876	4876		39.95	14.55	1	224160			13804	2683	7752	7752	17493	17493					0.03792876163083747
HYANIGKTL	9	Unmodified	_HYANIGKTL_					0	0	0		nc|ENSG00000115841|Q96LZ7-3|RMDN2;ENST00000440353.5_1_2:38177721-38224681:+|nuORF;nc|ENSG00000115841|Q96LZ7-4|RMDN2;ENSG00000115841|ENST00000354545|RMDN2;nc|ENSG00000115841|Q96LZ7-2|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7799377441406	2	508.779816	1015.54508	-0.036541	-1.8591E-05	-0.98243	-0.00049984	-1.019	-0.00051843	508.77925216511676	28.034	0.51307	28.03	27.793	28.306	-0.0042572					31	17	2	0	0	0	0.13643	1	4860	4860		45.7	18.816	1	185680			13805	2683	7752	7752	17494	17494					0.03792876163083747
HYANIGKTL	9	Unmodified	_HYANIGKTL_					0	0	0		nc|ENSG00000115841|Q96LZ7-3|RMDN2;ENST00000440353.5_1_2:38177721-38224681:+|nuORF;nc|ENSG00000115841|Q96LZ7-4|RMDN2;ENSG00000115841|ENST00000354545|RMDN2;nc|ENSG00000115841|Q96LZ7-2|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	nc|ENSG00000115841|Q96LZ7-3|RMDN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8026428222656	2	508.779816	1015.54508	-0.13044	-6.6367E-05	-0.81034	-0.00041229	-0.94079	-0.00047865	508.7791821480533	27.981	0.52819	27.982	27.793	28.322	0.0004673					33	18	3	0	0	0	0.15943	1	4867	4867		39.95	14.55	1	198600			13806	2683	7752	7752	17495	17495					0.03792876163083747
HYARRQFHL	9	Unmodified	_HYARRQFHL_					0	0	0		ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.8882751464844	3	409.887979	1226.64211	-0.22844	-9.3634E-05	-0.22327	-9.1516E-05	-0.45171	-0.00018515	409.88812858069184	22.422	3.5996	22.422	21.845	25.445	0					314	125	6	0	0	0	0.013258	9	3138	3093;3138;3189;3234;3311;3356;3416;3440;3488		57.722	30.499	1	5484600			13807	2568	7753	7753	17496;17497;17498;17499;17500;17501;17502;17503;17504	17497					0.037852831627787964
HYARRQFHL	9	Unmodified	_HYARRQFHL_					0	0	0		ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.88818359375	3	409.887979	1226.64211	-0.0531	-2.1765E-05	-0.34674	-0.00014212	-0.39984	-0.00016389	409.8880316568056	22.5	3.0694	22.412	21.845	24.914	-0.087608					300	108	5	0	0	0	0.015674	8	3156	3105;3156;3204;3246;3340;3385;3434;3484		53.833	32.243	1	4970600			13808	2568	7753	7753	17505;17506;17507;17508;17509;17510;17511;17512	17506					0.037852831627787964
HYARRQFHL	9	Unmodified	_HYARRQFHL_					0	0	0		ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.8879089355469	3	409.887979	1226.64211	-0.047506	-1.9472E-05	-0.36816	-0.00015091	-0.41567	-0.00017038	409.88800546583025	22.634	3.4443	22.589	21.779	25.223	-0.044867					319	121	5	0	0	0	0.013276	9	3301	3121;3171;3216;3259;3301;3349;3392;3440;3494		56.177	26.61	1	4096300			13809	2568	7753	7753	17513;17514;17515;17516;17517;17518;17519;17520;17521	17517					0.037852831627787964
HYDLMIGLTF	10	Unmodified	_HYDLMIGLTF_					0	0	0		ENSG00000154415|ENST00000284601|PPP1R3A	ENSG00000154415|ENST00000284601|PPP1R3A	ENSG00000154415|ENST00000284601|PPP1R3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.7711181640625	2	605.302267	1208.58998	0.45568	0.00027582	-4.0269	-0.0024375	-3.5712	-0.0021616	605.3000075243078	45.146	0.15522	45.221	45.129	45.284	0.075047					6	5	2	0	0	0	0.31629	1	10043	10043		10.074	0.6908	1	109650			13810	5127	7754	7754	17522	17522					-0.0059706108590944496
HYELEYRHR	9	Unmodified	_HYELEYRHR_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8822021484375	3	434.882782	1301.62652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.63	1	112.63	112.13	113.13	0								0	0	0	0.2678	1	29268	29268		0.23584	0	1				13811	3360	7755	7755	17523	17523					-0.012230481449705621
HYFLSDGLY	9	Unmodified	_HYFLSDGLY_					0	0	0		ENSG00000082213|ENST00000325366|C5orf22	ENSG00000082213|ENST00000325366|C5orf22	ENSG00000082213|ENST00000325366|C5orf22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7642822265625	2	557.763832	1113.51311	0.42222	0.0002355	-0.0061415	-3.4255E-06	0.41608	0.00023207	557.7637061290638	54.037	0.6857	54.101	53.773	54.459	0.063202					82	25	4	0	0	0	0.155	1	12875	12875		30.225	3.3412	1	4692300			13812	1196	7756	7756	17524	17524					-0.03910536310718271
HYGKVYLL	8	Unmodified	_HYGKVYLL_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7818603515625	2	496.781828	991.549102	0.46675	0.00023187	-0.053968	-2.681E-05	0.41278	0.00020506	496.7817546931244	40.199	1.3394	40.199	39.886	41.225	0					117	48	3	0	0	0	0.30517	1	8529	8529		30.225	3.8835	1	924340			13813	368	7757	7757	17525	17525					0.052989656568115606
HYGKVYLL	8	Unmodified	_HYGKVYLL_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7816162109375	2	496.781828	991.549102	0.59613	0.00029614	-0.1014	-5.0375E-05	0.49472	0.00024577	496.7816953059444	39.997	1.3313	40.089	39.777	41.109	0.09267					112	48	3	0	0	0	0.30517	1	8455	8455		30.225	30.225	1	974330			13814	368	7757	7757	17526	17526					0.052989656568115606
HYGKVYLL	8	Unmodified	_HYGKVYLL_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7821044921875	2	496.781828	991.549102	0.43635	0.00021677	0.15774	7.8362E-05	0.59409	0.00029513	496.7818248001893	39.948	1.1498	40.047	39.762	40.912	0.099403					96	41	3	0	0	0	0.30517	1	8460	8460		30.225	3.8835	1	1007400			13815	368	7757	7757	17527	17527					0.052989656568115606
HYGKVYLL	8	Unmodified	_HYGKVYLL_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	496.781828	991.549102	0.59613	0.00029614	-0.1014	-5.0375E-05	0.49472	0.00024577	496.7816953059444	39.997	1.3313	40.089	39.777	41.109	0.09267	-0.022238	-8.632E-05	NaN	30.225	112	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	974330			13816	368	7757	7757							0.052989656568115606
HYGLLFDEF	9	Unmodified	_HYGLLFDEF_					0	0	0		ENSG00000055147|ENST00000351797|FAM114A2;ENST00000518735.1_1_5:153405944-153406840:-|nuORF	ENSG00000055147|ENST00000351797|FAM114A2	ENSG00000055147|ENST00000351797|FAM114A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.7721557617188	2	570.771657	1139.52876	0.10315	5.8874E-05	0.076513	4.3672E-05	0.17966	0.00010255	570.7718183088317	75.433	0.99015	75.433	75.178	76.168	0					86	35	4	0	0	0	0.055495	2	19448	19448;19516		50.855	28.119	1	612920			13817	701	7758	7758	17528;17529	17528					-0.035422497936679065
HYGLLFDEF	9	Unmodified	_HYGLLFDEF_					0	0	0		ENSG00000055147|ENST00000351797|FAM114A2;ENST00000518735.1_1_5:153405944-153406840:-|nuORF	ENSG00000055147|ENST00000351797|FAM114A2	ENSG00000055147|ENST00000351797|FAM114A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7722778320312	2	570.771657	1139.52876	0.37147	0.00021203	-0.15396	-8.7875E-05	0.21752	0.00012415	570.7715659122722	75.393	1.1523	75.445	75.218	76.37	0.052368					100	41	4	0	0	0	0.029841	3	19418	19418;19471;19504		60.39	37.653	1	556930			13818	701	7758	7758	17530;17531;17532	17530					-0.035422497936679065
HYGLLFDEF	9	Unmodified	_HYGLLFDEF_					0	0	0		ENSG00000055147|ENST00000351797|FAM114A2;ENST00000518735.1_1_5:153405944-153406840:-|nuORF	ENSG00000055147|ENST00000351797|FAM114A2	ENSG00000055147|ENST00000351797|FAM114A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.772216796875	2	570.771657	1139.52876	0.36428	0.00020792	0.095637	5.4587E-05	0.45992	0.00026251	570.7718175661831	75.499	0.90207	75.467	75.235	76.137	-0.031487					71	32	3	0	0	0	0.055495	1	19463	19463		50.855	28.119	1	715470			13819	701	7758	7758	17533	17533					-0.035422497936679065
HYGRFQEF	8	Unmodified	_HYGRFQEF_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000152778|Q13325-2|IFIT5;ENSG00000152778|ENST00000371795|IFIT5	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.334716796875	2	542.253966	1082.49338	-0.13178	-7.1456E-05	0.79999	0.0004338	0.66821	0.00036234	542.254321874138	34.288	0.89644	34.288	34.104	35	0					65	31	3	0	0	0	0.33993	1	6878	6878		11.64	3.7301	1	254750			13820	7555	7759	7759	17534	17534					-0.04456867530825548
HYGRFQEF	8	Unmodified	_HYGRFQEF_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1;nc|ENSG00000152778|Q13325-2|IFIT5;ENSG00000152778|ENST00000371795|IFIT5	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3348388671875	2	542.253966	1082.49338	0.32502	0.00017624	0.11714	6.352E-05	0.44216	0.00023977	542.2538587111419	34.139	0.81079	34.206	33.907	34.718	0.066704					50	28	2	0	0	0	0.33993	1	6816	6816		16.942	9.0321	1	293540			13821	7555	7759	7759	17535	17535					-0.04456867530825548
HYILHNSFF	9	Unmodified	_HYILHNSFF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.2933349609375	2	589.293091	1176.57163	0.38263	0.00022548	0.088556	5.2185E-05	0.47118	0.00027767	589.2929297452087	52.07	2.7822	52.07	51.592	54.374	0					297	102	7	0	0	0	1.0663E-16	11	12219	12173;12219;12264;12306;12351;12406;12453;12505;12567;12623;12711		214.41	214.41	1	8816500			13822	5717	7760	7760	17536;17537;17538;17539;17540;17541;17542;17543;17544;17545;17546	17537					-0.009594349455710471
HYILHNSFF	9	Unmodified	_HYILHNSFF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.2930908203125	2	589.293091	1176.57163	0.40044	0.00023598	-0.054707	-3.2238E-05	0.34573	0.00020374	589.2929571417424	51.992	3.1707	52.043	51.651	54.821	0.050575					249	117	5	0	0	0	1.0663E-16	9	12144	12144;12183;12227;12278;12327;12378;12430;12476;12526		214.41	214.41	1	10231000			13823	5717	7760	7760	17547;17548;17549;17550;17551;17552;17553;17554;17555	17547					-0.009594349455710471
HYILHNSFF	9	Unmodified	_HYILHNSFF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.2933959960938	2	589.293091	1176.57163	0.26185	0.00015431	0.063891	3.7651E-05	0.32574	0.00019196	589.2930345349596	52.268	3.0966	52.268	51.819	54.915	-0.00081253					245	113	3	0	0	0	1.0663E-16	10	12257	12208;12257;12309;12362;12410;12461;12515;12547;12611;12669		214.41	214.41	1	10975000			13824	5717	7760	7760	17556;17557;17558;17559;17560;17561;17562;17563;17564;17565	17557					-0.009594349455710471
HYILNGNKF	9	Unmodified	_HYILNGNKF_					0	0	0		nc|ENSG00000128928|P26440-2|IVD;ENSG00000128928|ENST00000487418|IVD;nc|ENSG00000128928|P26440|IVD	nc|ENSG00000128928|P26440-2|IVD	nc|ENSG00000128928|P26440-2|IVD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8107299804688	2	553.293091	1104.57163	0.45563	0.0002521	0.72993	0.00040386	1.1856	0.00065596	553.2932009284062	36.102	0.42625	36.102	35.856	36.282	0					21	15	2	0	0	0	0.055495	1	7313	7313		50.855	29.108	1	167690			13825	3402	7761	7761	17566	17566					0.023525650544115706
HYINYKVHF	9	Unmodified	_HYINYKVHF_					0	0	0		ENST00000357997.9_1_12:133331595-133331631:-|nuORF	ENST00000357997.9_1_12:133331595-133331631:-|nuORF	ENST00000357997.9_1_12:133331595-133331631:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5746765136719	3	407.545219	1219.61383	0.052673	2.1467E-05	-0.91757	-0.00037395	-0.8649	-0.00035248	407.5449605588989	38.338	0.75945	38.429	38.101	38.861	0.090881					46	27	3	0	0	0	0.24787	1	7959	7959		15.248	10.72	1	169490			13826	9640	7762	7762	17567	17567					0.012805404627897587
HYINYKVHF	9	Unmodified	_HYINYKVHF_					0	0	0		ENST00000357997.9_1_12:133331595-133331631:-|nuORF	ENST00000357997.9_1_12:133331595-133331631:-|nuORF	ENST00000357997.9_1_12:133331595-133331631:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	407.545219	1219.61383	-0.21086	-8.5935E-05	0.13578	5.5336E-05	-0.075081	-3.0599E-05	407.5451308388881	38.362	0.61971	38.362	38.092	38.711	0	-0.0030016	0.00038993	NaN	15.248	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213010			13827	9640	7762	7762							0.012805404627897587
HYIPRAVLL	9	Unmodified	_HYIPRAVLL_					0	0	0		ENST00000589613.1_1_17:40761741-40762767:+|nuORF;ENST00000588056.1_1_17:40761755-40764233:+|nuORF;ENST00000588870.1_1_17:40811874-40817754:+|nuORF;ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2	ENST00000589613.1_1_17:40761741-40762767:+|nuORF	ENST00000589613.1_1_17:40761741-40762767:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3299560546875	2	541.329476	1080.6444	0.77196	0.00041788	-0.36229	-0.00019612	0.40967	0.00022176	541.329164768066	47.138	0.75302	47.138	46.961	47.714	0					63	26	3	0	0	0	0.19839	1	10757	10757		21.747	10.106	1	623880			13828	582	7763	7763	17568	17568					0.1073031884784541
HYIPRAVLL	9	Unmodified	_HYIPRAVLL_					0	0	0		ENST00000589613.1_1_17:40761741-40762767:+|nuORF;ENST00000588056.1_1_17:40761755-40764233:+|nuORF;ENST00000588870.1_1_17:40811874-40817754:+|nuORF;ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2	ENST00000589613.1_1_17:40761741-40762767:+|nuORF	ENST00000589613.1_1_17:40761741-40762767:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.3290405273438	2	541.329476	1080.6444	0.48014	0.00025992	-0.064724	-3.5037E-05	0.41542	0.00022488	541.3292777210032	47.175	0.64118	47.228	46.984	47.626	0.05257					57	23	3	0	0	0	0.21905	1	10694	10694		23.148	6.2061	1	658640			13829	582	7763	7763	17569	17569					0.1073031884784541
HYIPRAVLL	9	Unmodified	_HYIPRAVLL_					0	0	0		ENST00000589613.1_1_17:40761741-40762767:+|nuORF;ENST00000588056.1_1_17:40761755-40764233:+|nuORF;ENST00000588870.1_1_17:40811874-40817754:+|nuORF;ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2	ENST00000589613.1_1_17:40761741-40762767:+|nuORF	ENST00000589613.1_1_17:40761741-40762767:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.329476	1080.6444	1.1655	0.00063093	-0.97411	-0.00052732	0.19141	0.00010362	541.3287994037302	47.173	0.65049	47.228	46.972	47.622	0.054371	0.029925	-0.00055968	NaN	21.747	63	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	692190			13830	582	7763	7763							0.1073031884784541
HYIRKYNRF	9	Unmodified	_HYIRKYNRF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5943603515625	3	432.903518	1295.68872	-0.25227	-0.00010921	-0.14703	-6.365E-05	-0.3993	-0.00017286	432.90327637475514	24.625	0.72	24.594	24.142	24.862	-0.031408					43	23	2	0	0	0	0.25992	1	3847	3847		4.5289	4.5289	1	71394			13831	4449	7764	7764	17570	17570					0.05270722994009702
HYISDVYDF	9	Unmodified	_HYISDVYDF_					0	0	0		ENSG00000131864|ENST00000254181|USP29	ENSG00000131864|ENST00000254181|USP29	ENSG00000131864|ENST00000254181|USP29	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.8200073242188	2	579.758746	1157.50294	0.51404	0.00029802	-1.1435	-0.00066294	-0.62943	-0.00036492	579.7575197587327	51.07	0.13355	51.07	51.006	51.139	0					5	4	2	0	0	0	0.24739	1	11880	11880		13.508	0	1	98243			13832	3595	7765	7765	17571	17571					-0.06951144035951984
HYKPTPLYF	9	Unmodified	_HYKPTPLYF_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;SMC4|p.N1243Mfs*5|1|0.2|ENSG00000113810|chr3:160433665-160433665|A/-|frameshift_variant;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.305908203125	2	583.305667	1164.59678	0.44698	0.00026072	-0.20163	-0.00011761	0.24535	0.00014311	583.3056248813587	45.221	1.7366	45.221	44.829	46.566	0					174	63	4	0	0	0	0.0028626	5	10092	10038;10092;10139;10189;10347		103.35	71.048	1	4012400			13833	2532	7766	7766	17572;17573;17574;17575;17576	17573					0.02106619856999714
HYKPTPLYF	9	Unmodified	_HYKPTPLYF_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;SMC4|p.N1243Mfs*5|1|0.2|ENSG00000113810|chr3:160433665-160433665|A/-|frameshift_variant;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3057861328125	2	583.305667	1164.59678	0.37966	0.00022146	-0.15399	-8.9824E-05	0.22567	0.00013163	583.3056238616746	44.924	1.7746	44.993	44.682	46.456	0.068569					178	63	4	0	0	0	0.0037772	5	10013	9965;10013;10058;10348;10364		96.111	60.067	1	4119700			13834	2532	7766	7766	17577;17578;17579;17580;17581	17578					0.02106619856999714
HYKPTPLYF	9	Unmodified	_HYKPTPLYF_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;SMC4|p.N1243Mfs*5|1|0.2|ENSG00000113810|chr3:160433665-160433665|A/-|frameshift_variant;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3057861328125	2	583.305667	1164.59678	0.46722	0.00027253	-0.22492	-0.0001312	0.24229	0.00014133	583.3055905323539	44.963	1.5927	45.038	44.697	46.289	0.075047					176	58	4	0	0	0	0.0023784	4	9967	9967;10018;10066;10283		107.19	71.048	1	4334200			13835	2532	7766	7766	17582;17583;17584;17585	17582					0.02106619856999714
HYLYQIAHL	9	Unmodified	_HYLYQIAHL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.D368Mfs*46|1|0.34|ENSG00000189091|chr16:70541700-70541701|-/AT|frameshift_variant	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3089599609375	2	579.308741	1156.60293	0.64252	0.00037222	-0.55205	-0.0003198	0.090475	5.2413E-05	579.3085180696114	50.521	1.4824	50.521	50.166	51.648	0					107	54	4	0	0	0	0.037153	1	11736	11736		74.423	5.3178	1	2297900			13836	7801	7767	7767	17586	17586					0.030891380884895625
HYLYQIAHL	9	Unmodified	_HYLYQIAHL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.D368Mfs*46|1|0.34|ENSG00000189091|chr16:70541700-70541701|-/AT|frameshift_variant	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.820556640625	2	579.308741	1156.60293	0.85327	0.0004943	-0.7961	-0.00046119	0.057165	3.3116E-05	579.308362458593	50.469	1.4353	50.514	50.185	51.62	0.044888					109	52	4	0	0	0	0.013258	2	11823	11731;11823		74.423	34.465	1	2184800			13837	7801	7767	7767	17587;17588	17588					0.030891380884895625
HYLYQIAHL	9	Unmodified	_HYLYQIAHL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.D368Mfs*46|1|0.34|ENSG00000189091|chr16:70541700-70541701|-/AT|frameshift_variant	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.8322143554688	2	579.308741	1156.60293	0.094669	5.4843E-05	-3.8259	-0.0022164	-3.7312	-0.0021615	579.3065089779284	52.054	0.53904	52.054	51.576	52.115	-0.00080872					32	19	2	0	0	0	0.1854	1	12114	12114		32.305	15.193	1	500270			13838	7801	7767	7767	17589	17589					0.030891380884895625
HYMPPPYASL	10	Oxidation (M)	_HYM(Oxidation (M))PPPYASL_		HYM(1)PPPYASL		HYM(110)PPPYASL	0	0	1		ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111	ENSG00000157450|ENST00000348370|RNF111	ENSG00000157450|ENST00000348370|RNF111	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.279296875	2	596.278792	1190.54303	0.78168	0.0004661	-0.21605	-0.00012882	0.56563	0.00033727	596.2787803955729	47.063	1.0112	47.063	46.76	47.771	0					99	35	4	0	0	0	0.00013044	1	10642	10642		112.59	95.48	1	3913200			13839	5308	7768	7768	17590	17590		639			-0.04461920637049843
HYMPPPYASL	10	Oxidation (M)	_HYM(Oxidation (M))PPPYASL_		HYM(1)PPPYASL		HYM(140)PPPYASL	0	0	1		ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111	ENSG00000157450|ENST00000348370|RNF111	ENSG00000157450|ENST00000348370|RNF111	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.279296875	2	596.278792	1190.54303	0.51433	0.00030669	0.22444	0.00013383	0.73878	0.00044052	596.279017075471	46.989	1.1226	47.041	46.655	47.777	0.052574					106	41	4	0	0	0	3.2454E-05	1	10653	10653		139.54	111.92	1	3563300			13840	5308	7768	7768	17591	17591		639			-0.04461920637049843
HYMPPPYASL	10	Oxidation (M)	_HYM(Oxidation (M))PPPYASL_		HYM(1)PPPYASL		HYM(140)PPPYASL	0	0	1		ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111	ENSG00000157450|ENST00000348370|RNF111	ENSG00000157450|ENST00000348370|RNF111	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.2792358398438	2	596.278792	1190.54303	0.93264	0.00055611	-0.19685	-0.00011738	0.73579	0.00043874	596.2788729956886	46.992	1.1271	47.046	46.681	47.808	0.054371					107	40	4	0	0	0	3.2454E-05	1	10660	10660		139.54	111.92	1	3515100			13841	5308	7768	7768	17592	17592		639			-0.04461920637049843
HYMSINDSF	9	Oxidation (M)	_HYM(Oxidation (M))SINDSF_		HYM(1)SINDSF		HYM(100)SINDSF	0	0	1		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.234619140625	2	565.234581	1128.45461	-0.040923	-2.3131E-05	0.065513	3.703E-05	0.02459	1.3899E-05	565.2346122921729	39.353	1.7833	39.353	38.931	40.714	0					149	64	3	0	0	0	0.0028626	4	8325	8228;8274;8325;8372		103.35	67.226	1	921250			13842	7574	7769	7769	17593;17594;17595;17596	17595		835			-0.10447960947499269
HYMSINDSF	9	Oxidation (M)	_HYM(Oxidation (M))SINDSF_		HYM(1)SINDSF		HYM(110)SINDSF	0	0	1		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.2346801757812	2	565.234581	1128.45461	0.26282	0.00014855	-0.19913	-0.00011256	0.063683	3.5996E-05	565.234424634402	39.215	1.4248	39.308	38.888	40.313	0.092674					118	50	3	0	0	0	0.0024096	3	8285	8181;8231;8285		106.94	70.813	1	1001500			13843	7574	7769	7769	17597;17598;17599	17599		835			-0.10447960947499269
HYMSINDSF	9	Oxidation (M)	_HYM(Oxidation (M))SINDSF_		HYM(1)SINDSF		HYM(110)SINDSF	0	0	1		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.234619140625	2	565.234581	1128.45461	0.33319	0.00018833	-0.34813	-0.00019677	-0.014939	-8.4443E-06	565.2343822599212	39.144	1.6623	39.243	38.869	40.532	0.099403					129	59	4	0	0	0	0.0024096	3	8245	8193;8245;8294		106.94	70.813	1	888570			13844	7574	7769	7769	17600;17601;17602	17601		835			-0.10447960947499269
HYNSHSENLS	10	Unmodified	_HYNSHSENLS_					0	0	0		L1PA11_dup3980|chr21:5561002-5564111:-|1.0845136525595764|0.1273465350769654|3.09|530.0|13|1|sense	L1PA11_dup3980|chr21:5561002-5564111:-|1.0845136525595764|0.1273465350769654|3.09|530.0|13|1|sense	L1PA11_dup3980|chr21:5561002-5564111:-|1.0845136525595764|0.1273465350769654|3.09|530.0|13|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.7800903320312	2	594.257434	1186.50031	0.4324	0.00025696	2.1726	0.0012911	2.605	0.001548	594.7598708875217	62.171	0.32101	62.171	61.971	62.292	0					17	11	2	0	0	0	0.3144	1	15265	15265		8.7454	2.5396	1	131680			13845	12473	7770	7770	17603	17603					-0.08547599440908016
HYPINNLLAIE	11	Unmodified	_HYPINNLLAIE_					0	0	0			REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.9032287597656	3	432.903072	1295.68739	-0.0287	-1.2424E-05	0.15879	6.8743E-05	0.13009	5.6318E-05	432.9030839182523	21.09	2.2865	21.09	20.709	22.996	0					237	80	4	0	0	0	0.35571	7	2897	2701;2747;2792;2835;2880;2897;2937		17.049	12.856	1	1622000	+		13846	17131	7771	7771	17604;17605;17606;17607;17608;17609;17610	17609					0.05137044114621858
HYPINNLLAIE	11	Unmodified	_HYPINNLLAIE_					0	0	0			REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.23760986328125	3	432.903072	1295.68739	-0.0287	-1.2424E-05	0.15879	6.8743E-05	0.13009	5.6318E-05	432.9030839182523	21.09	2.2865	21.09	20.709	22.996	0					237	80	4	0	0	0	0.32824	1	2701	2701		12.856	5.8189	1	1622000	+		13847	17131	7771	7771	17611	17611					0.05137044114621858
HYPINNLLAIE	11	Unmodified	_HYPINNLLAIE_					0	0	0			REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.9031982421875	3	432.903072	1295.68739	0.11219	4.8567E-05	0.051128	2.2134E-05	0.16332	7.07E-05	432.9030885103505	21.34	2.2781	21.234	20.868	23.146	-0.1063					251	81	5	0	0	0	0.38765	6	2753	2753;2803;2848;2891;2945;3002		12.856	12.856	1	1678900	+		13848	17131	7771	7771	17612;17613;17614;17615;17616;17617	17612					0.05137044114621858
HYPINNLLAIE	11	Unmodified	_HYPINNLLAIE_					0	0	0			REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.90313720703125	3	432.903072	1295.68739	-0.037845	-1.6383E-05	0.24202	0.00010477	0.20418	8.839E-05	432.90314883941585	21.35	1.9215	21.3	20.783	22.704	-0.049377					222	67	5	0	0	0	0.35571	6	2725	2725;2773;2822;2869;2922;2975		17.049	12.856	1	1506800	+		13849	17131	7771	7771	17618;17619;17620;17621;17622;17623	17618					0.05137044114621858
HYPLNTVTF	9	Unmodified	_HYPLNTVTF_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000490566.1_1_2:218669184-218678576:-|nuORF	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2799682617188	2	546.279649	1090.54475	0.56598	0.00030919	-0.007922	-4.3276E-06	0.55806	0.00030486	546.279844575605	53.176	3.8862	53.176	52.049	55.935	0					239	64	5	0	0	0	0.00011048	7	12501	12501;12551;12591;12635;12683;12731;12786		139.14	99.181	1	38571000			13850	1129	7772	7772	17624;17625;17626;17627;17628;17629;17630	17624					0.003094564432331026
HYPLNTVTF	9	Unmodified	_HYPLNTVTF_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000490566.1_1_2:218669184-218678576:-|nuORF	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.27978515625	2	546.279649	1090.54475	0.73992	0.0004042	1.4771	0.00080689	2.217	0.0012111	546.2805927893352	54.464	1.887	54.464	54.105	55.992	0					158	68	5	0	0	0	0.0033114	1	12847	12847		99.799	54.099	1	17432000			13851	1129	7772	7772	17631	17631					0.003094564432331026
HYPLNTVTF	9	Unmodified	_HYPLNTVTF_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000490566.1_1_2:218669184-218678576:-|nuORF	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.280517578125	2	546.279649	1090.54475	0.70454	0.00038487	-0.12789	-6.9863E-05	0.57665	0.00031501	546.2797757683655	53.177	3.929	53.234	51.961	55.89	0.056259					244	64	5	0	0	0	0.00011048	7	12537	12495;12537;12585;12635;12683;12757;12806		139.14	99.181	1	39604000			13852	1129	7772	7772	17632;17633;17634;17635;17636;17637;17638	17633					0.003094564432331026
HYPLNTVTF	9	Unmodified	_HYPLNTVTF_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000490566.1_1_2:218669184-218678576:-|nuORF	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.2801513671875	2	546.279649	1090.54475	0.65179	0.00035606	-0.063456	-3.4665E-05	0.58833	0.0003214	546.2797825882254	53.321	2.1816	53.311	52.16	54.342	-0.0096092					262	66	5	0	0	0	0.00011048	7	12535	12535;12577;12625;12672;12723;12773;12835		139.14	99.181	1	38972000			13853	1129	7772	7772	17639;17640;17641;17642;17643;17644;17645	17639					0.003094564432331026
HYPPVQVLF	9	Unmodified	_HYPPVQVLF_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.300537109375	2	550.300384	1098.58622	0.44242	0.00024346	-0.10852	-5.972E-05	0.3339	0.00018374	550.3002219004777	63.144	2.0622	63.144	62.611	64.673	0					224	75	4	0	0	0	0.11517	2	15581	15581;15630		36.044	20.197	1	2143300			13854	2701	7773	7773	17646;17647	17646					0.040866372025675446
HYPPVQVLF	9	Unmodified	_HYPPVQVLF_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3001098632812	2	550.300384	1098.58622	0.53482	0.00029431	-0.22866	-0.00012583	0.30616	0.00016848	550.3001973034799	62.993	2.312	63.088	62.57	64.882	0.095722					231	83	4	0	0	0	0.055495	2	15575	15532;15575		50.855	36.017	1	2281800			13855	2701	7773	7773	17648;17649	17649					0.040866372025675446
HYPPVQVLF	9	Unmodified	_HYPPVQVLF_					0	0	0		nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-2|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6	nc|ENSG00000116062|P52701-4|MSH6	nc|ENSG00000116062|P52701-4|MSH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3004760742188	2	550.300384	1098.58622	0.45497	0.00025037	-0.12243	-6.7373E-05	0.33254	0.00018299	550.3002617559814	63.125	2.2402	63.117	62.542	64.782	-0.0085526					222	81	4	0	0	0	0.079066	3	15632	15544;15588;15632		42.095	32.305	1	2369600			13856	2701	7773	7773	17650;17651;17652	17652					0.040866372025675446
HYPQFSGQSF	10	Unmodified	_HYPQFSGQSF_					0	0	0		nc|ENSG00000100299|P15289-2|ARSA;nc|ENSG00000100299|P15289|ARSA;ENSG00000100299|ENST00000216124|ARSA	nc|ENSG00000100299|P15289-2|ARSA	nc|ENSG00000100299|P15289-2|ARSA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.8356323242188	2	599.269813	1196.52507	0.98987	0.0005932	-0.28214	-0.00016908	0.70773	0.00042412	599.2695966394949	47.091	0.65873	47.146	46.939	47.598	0.054371					33	23	2	0	0	0	0.31597	1	10595	10595		12.175	2.1008	1	198600			13857	1564	7774	7774	17653	17653					-0.06532919567530371
HYPQFSGQSF	10	Unmodified	_HYPQFSGQSF_					0	0	0		nc|ENSG00000100299|P15289-2|ARSA;nc|ENSG00000100299|P15289|ARSA;ENSG00000100299|ENST00000216124|ARSA	nc|ENSG00000100299|P15289-2|ARSA	nc|ENSG00000100299|P15289-2|ARSA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	599.269813	1196.52507	0.47542	0.00028491	-0.28596	-0.00017137	0.18946	0.00011354	599.2695857291186	47.128	0.55941	47.18	46.984	47.544	0.052574	0.017376	-1.6188E-06	NaN	12.175	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251110			13858	1564	7774	7774							-0.06532919567530371
HYQPIVGVFKL	11	Unmodified	_HYQPIVGVFKL_					0	0	0			REV__ENSG00000131378|ENST00000334133|RFTN1	REV__ENSG00000131378|ENST00000334133|RFTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7806396484375	3	434.251924	1299.73394	-0.11379	-4.9413E-05	-0.43052	-0.00018696	-0.54431	-0.00023637	434.2519565854977	31.37	0.35732	31.411	31.15	31.507	0.040991					19	12	3	0	0	0	0.33236	1	5867	5867		2.4348	0.8425	1	65954	+		13859	15508	7775	7775	17654	17654					0.09606528736571818
HYQQLLAY	8	Unmodified	_HYQQLLAY_					0	0	0		ENSG00000156966|ENST00000287590|B3GNT7	ENSG00000156966|ENST00000287590|B3GNT7	ENSG00000156966|ENST00000287590|B3GNT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8157348632812	2	518.266542	1034.51853	0.39795	0.00020624	-0.067927	-3.5204E-05	0.33002	0.00017104	518.2663866960617	48.557	0.30235	48.589	48.471	48.774	0.032043					15	10	2	0	0	0	0.33245	1	11099	11099		19.439	1.2926	1	353400			13860	5269	7776	7776	17655	17655					0.002651872717478909
HYRKLRHQK	9	Unmodified	_HYRKLRHQK_					0	0	0			REV__ENST00000552787.5_1_12:58089581-58109758:+|nuORF	REV__ENST00000552787.5_1_12:58089581-58109758:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3684692382812	2	633.37053	1264.72651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.61	1	112.62	112.12	113.12	0.0131								0	0	0	0.2672	1	29305	29305		0.52476	0.066424	1		+		13861	15746	7777	7777	17656	17656					0.10473233979496399
HYRKRGVHLAQ	11	Unmodified	_HYRKRGVHLAQ_					0	0	0		ENSG00000047617|ENST00000682330|ANO2;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2	ENSG00000047617|ENST00000682330|ANO2	ENSG00000047617|ENST00000682330|ANO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.27471923828125	3	455.593455	1363.75853	0.059168	2.6956E-05	-3.1263	-0.0014243	-3.0671	-0.0013974	455.59212885082985	26.883	0.5284	26.883	26.644	27.172	0					39	18	3	0	0	0	0.33296	1	4546	4546		2.6312	0.88896	1	65675			13862	635	7778	7778	17657	17657					0.09120601662675654
HYSDSILTF	9	Unmodified	_HYSDSILTF_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7696533203125	2	541.761289	1081.50803	0.44185	0.00023938	-0.88859	-0.00048141	-0.44674	-0.00024203	541.7609378227037	59.019	0.54781	59.019	58.832	59.38	0					46	19	3	0	0	0	0.037693	1	14307	14307		57.471	19.497	1	562620			13863	6767	7779	7779	17658	17658					-0.02946840173331111
HYSDSILTF	9	Unmodified	_HYSDSILTF_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7979125976562	2	541.761289	1081.50803	0.54257	0.00029394	-0.61633	-0.00033391	-0.073761	-3.9961E-05	541.7609942063468	58.896	0.53012	58.987	58.821	59.351	0.091305					40	18	3	0	0	0	0.10111	1	14326	14326		42.095	9.3089	1	520360			13864	6767	7779	7779	17659	17659					-0.02946840173331111
HYSDSILTF	9	Unmodified	_HYSDSILTF_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.769775390625	2	541.761289	1081.50803	0.65549	0.00035512	-0.76106	-0.00041231	-0.10557	-5.7194E-05	541.7611510584577	59.037	0.4804	59.023	58.86	59.34	-0.014267					29	16	2	0	0	0	0.14076	1	14320	14320		32.305	8.0955	1	625680			13865	6767	7779	7779	17660	17660					-0.02946840173331111
HYSDSILTF	9	Unmodified	_HYSDSILTF_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.761289	1081.50803	0.65549	0.00035512	-0.76106	-0.00041231	-0.10557	-5.7194E-05	541.7611510584577	59.037	0.4804	59.023	58.86	59.34	-0.014267	0.01342	-2.0369E-05	NaN	57.471	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	625680			13866	6767	7779	7779							-0.02946840173331111
HYSGRKAIIM	10	Unmodified	_HYSGRKAIIM_					0	0	0		ENST00000411843.1_1_2:63911439-63911595:+|nuORF	ENST00000411843.1_1_2:63911439-63911595:+|nuORF	ENST00000411843.1_1_2:63911439-63911595:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3230590820312	2	588.321325	1174.6281	0.012476	7.3402E-06	2.5049	0.0014737	2.5174	0.001481	588.3224828423346	12.317	0.36235	12.317	12.219	12.582	0					19	11	3	0	0	0	0.40106	1	102	102		3.2813	0.28607	1	104690			13867	10271	7780	7780	17661	17661					0.04776869619422541
HYSLFLTS	8	Unmodified	_HYSLFLTS_					0	0	0		ENSG00000146966|ENST00000496613|DENND2A	ENSG00000146966|ENST00000496613|DENND2A	ENSG00000146966|ENST00000496613|DENND2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.63446044921875	2	484.247818	966.481082	0.23402	0.00011332	0.0093675	4.5362E-06	0.24338	0.00011786	484.2472640669664	91.084	0.084244	91.084	91.013	91.097	0					8	5	2	0	0	0	0.34353	1	24167	24167		4.756	0	1	133180			13868	4741	7781	7781	17662	17662					-0.0034990399386742865
HYSPIYLSF	9	Unmodified	_HYSPIYLSF_					0	0	0		ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	ENST00000446331.6_1_8:11660331-11696115:+|nuORF	ENST00000446331.6_1_8:11660331-11696115:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.332275390625	2	563.782025	1125.5495	0.44817	0.00025267	0.2752	0.00015515	0.72337	0.00040782	563.7821107678046	66.214	1.1765	66.214	65.845	67.022	0					84	41	3	0	0	0	0.065123	1	16548	16548		64.236	22.397	1	721340			13869	1136	7782	7782	17663	17663					-0.008256594140220841
HYSPIYLSF	9	Unmodified	_HYSPIYLSF_					0	0	0		ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	ENST00000446331.6_1_8:11660331-11696115:+|nuORF	ENST00000446331.6_1_8:11660331-11696115:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3323974609375	2	563.782025	1125.5495	0.53544	0.00030187	0.32763	0.00018471	0.86307	0.00048658	563.7820496967985	66.099	1.0447	66.183	65.888	66.933	0.083832					68	37	2	0	0	0	0.065123	1	16521	16521		64.236	22.397	1	645490			13870	1136	7782	7782	17664	17664					-0.008256594140220841
HYSPIYLSF	9	Unmodified	_HYSPIYLSF_					0	0	0		ENST00000446331.6_1_8:11660331-11696115:+|nuORF;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENSG00000079459|ENST00000220584|FDFT1	ENST00000446331.6_1_8:11660331-11696115:+|nuORF	ENST00000446331.6_1_8:11660331-11696115:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.332275390625	2	563.782025	1125.5495	0.27446	0.00015474	0.36919	0.00020814	0.64365	0.00036288	563.782177903312	66.223	1.0663	66.209	65.945	67.012	-0.013588					66	38	2	0	0	0	0.065123	1	16544	16544		64.236	14.303	1	685960			13871	1136	7782	7782	17665	17665					-0.008256594140220841
HYSPPPFGLL	10	Unmodified	_HYSPPPFGLL_					0	0	0		nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8;ENST00000565302.5_1_16:732919-733769:-|nuORF;ENST00000564436.5_1_16:732796-733478:-|nuORF;ENST00000568689.5_1_16:732830-733478:-|nuORF;ENST00000569441.5_1_16:732796-733478:-|nuORF	nc|ENSG00000161999|Q96S16-2|JMJD8	nc|ENSG00000161999|Q96S16-2|JMJD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3265991210938	2	564.297842	1126.58113	0.25384	0.00014324	0.65361	0.00036883	0.90745	0.00051207	564.2983673267627	67.44	1.1931	67.44	66.717	67.911	0					95	41	3	0	0	0	0.28434	1	16876	16876		25.399	13.759	1	308500			13872	5541	7783	7783	17666	17666					0.022903333399654002
HYSPPPFGLL	10	Unmodified	_HYSPPPFGLL_					0	0	0		nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8;ENST00000565302.5_1_16:732919-733769:-|nuORF;ENST00000564436.5_1_16:732796-733478:-|nuORF;ENST00000568689.5_1_16:732830-733478:-|nuORF;ENST00000569441.5_1_16:732796-733478:-|nuORF	nc|ENSG00000161999|Q96S16-2|JMJD8	nc|ENSG00000161999|Q96S16-2|JMJD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.3265380859375	2	564.297842	1126.58113	0.13767	7.7687E-05	1.2524	0.00070672	1.3901	0.00078441	564.2985813591114	67.525	1.0422	67.509	66.867	67.909	-0.016304					66	35	2	0	0	0	0.28434	1	16872	16872		25.399	14.575	1	351630			13873	5541	7783	7783	17667	17667					0.022903333399654002
HYSTLVHMF	9	Oxidation (M)	_HYSTLVHM(Oxidation (M))F_		HYSTLVHM(1)F		HYSTLVHM(160)F	0	0	1		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7713623046875	2	575.771134	1149.52771	0.22829	0.00013144	-0.10866	-6.2566E-05	0.11962	6.8875E-05	575.771256464624	38.133	1.7092	38.133	37.532	39.242	0					142	60	4	0	0	0	4.6753E-07	3	7813	7813;7869;7915		161.89	121.94	1	1167000			13874	2033	7784	7784	17668;17669;17670	17668		250			-0.04106787434238868
HYSTLVHMF	9	Oxidation (M)	_HYSTLVHM(Oxidation (M))F_		HYSTLVHM(1)F		HYSTLVHM(140)F	0	0	1		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7713012695312	2	575.771134	1149.52771	0.40139	0.00023111	0.13222	7.6127E-05	0.53361	0.00030724	575.7711937565172	37.952	1.4998	38.043	37.501	39.001	0.090881					119	54	3	0	0	0	0.00010798	4	7777	7777;7827;7874;7924		139.54	103.42	1	1004600			13875	2033	7784	7784	17671;17672;17673;17674	17671		250			-0.04106787434238868
HYSTLVHMF	9	Oxidation (M)	_HYSTLVHM(Oxidation (M))F_		HYSTLVHM(1)F		HYSTLVHM(170)F	0	0	1		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7714233398438	2	575.771134	1149.52771	0.23198	0.00013357	-0.055328	-3.1857E-05	0.17666	0.00010171	575.7713662802416	38.02	1.6504	38.117	37.503	39.153	0.097527					157	59	4	0	0	0	2.4571E-07	3	7822	7775;7822;7871		170.55	126.69	1	1120700			13876	2033	7784	7784	17675;17676;17677	17676		250			-0.04106787434238868
HYTDRYRF	8	Unmodified	_HYTDRYRF_					0	0	0			REV__Tigger3_dup950|chr14:38251953-38252595:+|1.471247969561022|0.4287375842566568|1.78|541.0|28|3|sense	REV__Tigger3_dup950|chr14:38251953-38252595:+|1.471247969561022|0.4287375842566568|1.78|541.0|28|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3087768554688	2	579.277972	1156.54139	0.57964	0.00033577	-0.69127	-0.00040044	-0.11163	-6.4667E-05	579.2775079395122	50.947	0.69665	50.947	50.686	51.382	0					31	25	2	0	0	0	0.33995	1	11791	11791		15.768	3.2367	1	256650	+		13877	23336	7785	7785	17678	17678					-0.030617936107773858
HYTEMSVAAP	10	Unmodified	_HYTEMSVAAP_					0	0	0			REV__ENST00000529874.5_1_11:118980840-118984381:+|nuORF	REV__ENST00000529874.5_1_11:118980840-118984381:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.25439453125	2	553.252774	1104.491	0.47259	0.00026146	2.6328	0.0014566	3.1054	0.0017181	553.2541531974833	31.712	0.86994	31.754	31.487	32.357	0.042364					54	30	3	0	0	0	0.40992	1	5930	5930		1.6526	0.17072	1	974730	+		13878	17708	7786	7786	17679	17679					-0.057070840507776666
HYTEMSVAAP	10	Unmodified	_HYTEMSVAAP_					0	0	0			REV__ENST00000529874.5_1_11:118980840-118984381:+|nuORF	REV__ENST00000529874.5_1_11:118980840-118984381:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.252774	1104.491	0.47259	0.00026146	2.6328	0.0014566	3.1054	0.0017181	553.2541531974833	31.712	0.86994	31.754	31.487	32.357	0.042364	0.072051	-0.00017897	NaN	1.6526	54	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	974730	+		13879	17708	7786	7786							-0.057070840507776666
HYTIVFNTF	9	Unmodified	_HYTIVFNTF_					0	0	0		nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000070961|P20020-1|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000070961|P20020-5|ATP2B1	nc|ENSG00000058668|P23634|ATP2B4	nc|ENSG00000058668|P23634|ATP2B4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.806396484375	2	571.287474	1140.5604	0.44015	0.00025145	0.34831	0.00019898	0.78845	0.00045043	571.2877748689933	64.537	0.59368	64.537	64.316	64.91	0					68	21	4	0	0	0	0.082808	1	16113	16113		58.679	35.943	1	1205000			13880	735	7787	7787	17680	17680					-0.004262570397258969
HYTIVFNTF	9	Unmodified	_HYTIVFNTF_					0	0	0		nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000070961|P20020-1|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000070961|P20020-5|ATP2B1	nc|ENSG00000058668|P23634|ATP2B4	nc|ENSG00000058668|P23634|ATP2B4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2880859375	2	571.287474	1140.5604	0.52968	0.0003026	0.43741	0.00024988	0.96709	0.00055248	571.28781731389	64.435	0.78011	64.528	64.284	65.064	0.09288					63	28	3	0	0	0	0.004681	1	16060	16060		88.954	48.715	1	1297000			13881	735	7787	7787	17681	17681					-0.004262570397258969
HYTIVFNTF	9	Unmodified	_HYTIVFNTF_					0	0	0		nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000070961|P20020-1|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000070961|P20020-5|ATP2B1	nc|ENSG00000058668|P23634|ATP2B4	nc|ENSG00000058668|P23634|ATP2B4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8064575195312	2	571.287474	1140.5604	0.39366	0.00022489	0.47283	0.00027012	0.8665	0.00049502	571.2878796278404	64.534	0.73461	64.524	64.315	65.05	-0.0095291					62	26	3	0	0	0	0.03332	1	16103	16103		78.728	42.222	1	1043200			13882	735	7787	7787	17682	17682					-0.004262570397258969
HYVDLKDRPFF	11	Unmodified	_HYVDLKDRPFF_					0	0	0		ENST00000512768.1_1_17:49231734-49237541:+|nuORF;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1;nc|ENSG00000243678|P22392-2|NME2	ENST00000512768.1_1_17:49231734-49237541:+|nuORF	ENST00000512768.1_1_17:49231734-49237541:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7727966308594	3	479.582221	1435.72483	0.30408	0.00014583	-0.26052	-0.00012494	0.043552	2.0887E-05	479.5821350330828	49.15	0.84546	49.15	48.883	49.729	0					48	30	2	0	0	0	0.33284	1	11413	11413		3.3557	0.51244	1	318400			13883	8514	7788	7788	17683	17683					0.024401353801977166
HYVDLKDRPFF	11	Unmodified	_HYVDLKDRPFF_					0	0	0		ENST00000512768.1_1_17:49231734-49237541:+|nuORF;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1;nc|ENSG00000243678|P22392-2|NME2	ENST00000512768.1_1_17:49231734-49237541:+|nuORF	ENST00000512768.1_1_17:49231734-49237541:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.77288818359375	3	479.582221	1435.72483	0.21682	0.00010398	0.068489	3.2846E-05	0.28531	0.00013683	480.25099104573127	49.195	0.6804	49.24	48.989	49.669	0.044891					59	24	3	0	0	0	0.33085	1	11408	11408		5.5233	2.8921	1	552230			13884	8514	7788	7788	17684	17684					0.024401353801977166
HYVDLKDRPFF	11	Unmodified	_HYVDLKDRPFF_					0	0	0		ENST00000512768.1_1_17:49231734-49237541:+|nuORF;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1;nc|ENSG00000243678|P22392-2|NME2	ENST00000512768.1_1_17:49231734-49237541:+|nuORF	ENST00000512768.1_1_17:49231734-49237541:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2510681152344	3	479.582221	1435.72483	0.10973	5.2626E-05	0.36159	0.00017341	0.47132	0.00022604	480.2511824135739	49.076	0.69926	49.108	48.929	49.628	0.032043					64	24	3	0	0	0	0.34327	1	11296	11296		18.34	13.934	1	564530			13885	8514	7788	7788	17685	17685					0.024401353801977166
HYVDLKDRPFF	11	Unmodified	_HYVDLKDRPFF_					0	0	0		ENST00000512768.1_1_17:49231734-49237541:+|nuORF;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1;nc|ENSG00000243678|P22392-2|NME2	ENST00000512768.1_1_17:49231734-49237541:+|nuORF	ENST00000512768.1_1_17:49231734-49237541:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.80047607421875	3	479.582221	1435.72483	0.36738	0.00017619	-0.45559	-0.00021849	-0.088208	-4.2303E-05	479.5819999530465	51.315	0.4924	51.325	51.068	51.561	0.0095634					49	18	3	0	0	0	0.33122	1	11955	11955		7.0371	2.9205	1	560740			13886	8514	7788	7788	17686	17686					0.024401353801977166
HYVEKPSTF	9	Unmodified	_HYVEKPSTF_					0	0	0		ENST00000481170.1_1_2:220366576-220368936:+|nuORF;ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA	ENST00000481170.1_1_2:220366576-220368936:+|nuORF	ENST00000481170.1_1_2:220366576-220368936:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.27587890625	2	554.277106	1106.53966	-0.027877	-1.5452E-05	-0.47487	-0.00026321	-0.50275	-0.00027866	554.2766670078635	28.135	0.74093	28.135	27.87	28.611	0					56	25	3	0	0	0	0.0046246	4	4849	4849;4896;4944;4989		89.401	60.319	1	640530			13887	4597	7789	7789	17687;17688;17689;17690	17687					-0.009348474193984657
HYVEKPSTF	9	Unmodified	_HYVEKPSTF_					0	0	0		ENST00000481170.1_1_2:220366576-220368936:+|nuORF;ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA	ENST00000481170.1_1_2:220366576-220368936:+|nuORF	ENST00000481170.1_1_2:220366576-220368936:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.2763061523438	2	554.277106	1106.53966	0.063789	3.5357E-05	-0.66951	-0.0003711	-0.60572	-0.00033574	554.2766546377516	28.118	1.0468	28.114	27.851	28.898	-0.0042572					65	36	3	0	0	0	0.0028542	3	4855	4855;4880;4941		103.42	72.151	1	656210			13888	4597	7789	7789	17691;17692;17693	17691					-0.009348474193984657
HYVEKPSTF	9	Unmodified	_HYVEKPSTF_					0	0	0		ENST00000481170.1_1_2:220366576-220368936:+|nuORF;ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA	ENST00000481170.1_1_2:220366576-220368936:+|nuORF	ENST00000481170.1_1_2:220366576-220368936:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2760620117188	2	554.277106	1106.53966	-0.08539	-4.733E-05	-0.61547	-0.00034114	-0.70086	-0.00038847	554.2766803589552	28.083	1.1023	28.084	27.82	28.922	0.0004673					71	38	3	0	0	0	0.0041491	4	4830	4830;4880;4934;5004		93.166	64.084	1	612550			13889	4597	7789	7789	17694;17695;17696;17697	17694					-0.009348474193984657
HYWNSKWTHR	10	Unmodified	_HYWNSKWTHR_					0	0	0			REV__ENST00000493546.1_1_X:153697446-153699024:+|nuORF	REV__ENST00000493546.1_1_X:153697446-153699024:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.8831481933594	3	472.230294	1413.66905	-0.14488	-6.8416E-05	-0.13057	-6.166E-05	-0.27545	-0.00013008	472.23022574963335	14.307	0.13358	14.202	14.105	14.238	-0.10466					6	4	2	0	0	0	0.32162	1	670	670		0.77653	0	1	27582	+		13890	21641	7790	7790	17698	17698					-0.021236530167243473
HYYSFDGLEY	10	Unmodified	_HYYSFDGLEY_					0	0	0		OTOGL|p.N2038Tfs*20|1|0.02|ENSG00000165899|chr12:80358723-80358724|-/ACATATA|frameshift_variant;OTOGL|p.M2037Kfs*21|1|0.04|ENSG00000165899|chr12:80358721-80358722|-/AAACAAT|frameshift_variant;ENSG00000165899|ENST00000547103|OTOGL	OTOGL|p.N2038Tfs*20|1|0.02|ENSG00000165899|chr12:80358723-80358724|-/ACATATA|frameshift_variant	OTOGL|p.N2038Tfs*20|1|0.02|ENSG00000165899|chr12:80358723-80358724|-/ACATATA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.8521423339844	3	431.852266	1292.53497	-0.27361	-0.00011816	0.11735	5.0676E-05	-0.15626	-6.7482E-05	431.8522640214433	39.894	1.2073	39.894	39.48	40.688	0					112	43	4	0	0	0	0.36002	1	8472	8472		6.1918	0	1	1179300			13891	6009	7791	7791	17699	17699					-0.09959776352798144
IAAIGEQN	8	Unmodified	_IAAIGEQN_					0	0	0		nc|ENSG00000171551|O95672-2|ECEL1;ENSG00000171551|ENST00000304546|ECEL1	nc|ENSG00000171551|O95672-2|ECEL1	nc|ENSG00000171551|O95672-2|ECEL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.2225341796875	2	408.216517	814.418482	-0.08326	-3.3988E-05	-1.176	-0.00048007	-1.2593	-0.00051406	408.2154917316734	67.32	1.5429	67.32	66.266	67.809	0					86	54	3	0	0	0	0.33441	2	16878	16878;16914		26.884	6.43	1	264020			13892	6555	7792	7792	17700;17701	17700					0.003849499379498411
IAAIGEQN	8	Unmodified	_IAAIGEQN_					0	0	0		nc|ENSG00000171551|O95672-2|ECEL1;ENSG00000171551|ENST00000304546|ECEL1	nc|ENSG00000171551|O95672-2|ECEL1	nc|ENSG00000171551|O95672-2|ECEL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	408.216517	814.418482	-0.025626	-1.0461E-05	-2.1808	-0.00089024	-2.2064	-0.0009007	408.2155483504604	67.219	0.61707	67.297	67.04	67.657	0.078041	-0.018274	-5.2907E-05	NaN	26.884	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243560			13893	6555	7792	7792							0.003849499379498411
IAAIGEQN	8	Unmodified	_IAAIGEQN_					0	0	0		nc|ENSG00000171551|O95672-2|ECEL1;ENSG00000171551|ENST00000304546|ECEL1	nc|ENSG00000171551|O95672-2|ECEL1	nc|ENSG00000171551|O95672-2|ECEL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	408.216517	814.418482	-0.1227	-5.0087E-05	-2.0889	-0.00085273	-2.2116	-0.00090281	408.2155156022439	67.344	0.50215	67.328	67.06	67.562	-0.016296	0.013062	2.212E-05	NaN	26.884	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200850			13894	6555	7792	7792							0.003849499379498411
IAAIVVAVI	9	Unmodified	_IAAIVVAVI_					0	0	0		ENSG00000110651|ENST00000263645|CD81;ENST00000468153.1_1_11:2416081-2418093:+|nuORF;ENST00000531840.1_1_11:2417722-2418004:+|nuORF;ENST00000481386.1_1_11:2417722-2418093:+|nuORF	ENSG00000110651|ENST00000263645|CD81;ENST00000531840.1_1_11:2417722-2418004:+|nuORF	ENSG00000110651|ENST00000263645|CD81	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.75897216796875	2	434.796946	867.57934	0.012474	5.4239E-06	-1.2282	-0.00053401	-1.2157	-0.00052859	434.79672409904384	79.763	0.4873	79.825	79.618	80.106	0.061409					31	17	2	0	0	0	0.15605	1	20682	20682		28.173	10.038	1	105970			13895	2319;11028	7793	7793	17702	17702					0.14025324321983135
IAAIVVAVI	9	Unmodified	_IAAIVVAVI_					0	0	0		ENSG00000110651|ENST00000263645|CD81;ENST00000468153.1_1_11:2416081-2418093:+|nuORF;ENST00000531840.1_1_11:2417722-2418004:+|nuORF;ENST00000481386.1_1_11:2417722-2418093:+|nuORF	ENSG00000110651|ENST00000263645|CD81;ENST00000531840.1_1_11:2417722-2418004:+|nuORF	ENSG00000110651|ENST00000263645|CD81	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.759033203125	2	434.796946	867.57934	-0.035725	-1.5533E-05	-1.1658	-0.00050688	-1.2015	-0.00052241	434.79654317638835	79.914	0.38802	79.885	79.696	80.084	-0.028923					19	13	2	0	0	0	0.22431	1	20696	20696		14.582	2.0501	1	64294			13896	2319;11028	7793	7793	17703	17703					0.14025324321983135
IAAPILHV	8	Unmodified	_IAAPILHV_					0	0	0		nc|ENSG00000099998|P36269-3|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-3|GGT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.2657470703125	2	417.265813	832.517074	-0.0038415	-1.6029E-06	-0.11832	-4.9369E-05	-0.12216	-5.0972E-05	417.2656968032269	52.389	0.75223	52.389	52.123	52.875	0					59	26	3	0	0	0	0.079765	2	12300	12300;12354		64.081	31.627	1	1517300			13897	1513	7794	7794	17704;17705	17704					0.09411597973655716
IAAPILHV	8	Unmodified	_IAAPILHV_					0	0	0		nc|ENSG00000099998|P36269-3|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-3|GGT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.2654724121094	2	417.265813	832.517074	0.23749	9.9096E-05	-0.33897	-0.00014144	-0.10148	-4.2344E-05	417.2655558740896	52.384	0.70449	52.434	52.144	52.848	0.050571					53	25	3	0	0	0	0.079765	2	12274	12274;12330		64.081	31.627	1	1731000			13898	1513	7794	7794	17706;17707	17706					0.09411597973655716
IAAPILHV	8	Unmodified	_IAAPILHV_					0	0	0		nc|ENSG00000099998|P36269-3|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-3|GGT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.265869140625	2	417.265813	832.517074	0.030112	1.2565E-05	-0.084904	-3.5428E-05	-0.054792	-2.2863E-05	417.26569216213727	52.435	0.68006	52.434	52.141	52.821	-0.00081253					43	24	2	0	0	0	0.052153	2	12272	12272;12319		77.196	44.742	1	1375200			13899	1513	7794	7794	17708;17709	17708					0.09411597973655716
IAAQQNKL	8	Unmodified	_IAAQQNKL_					0	0	0			REV__ENST00000286298.4_1_5:149360345-149360531:+|nuORF	REV__ENST00000286298.4_1_5:149360345-149360531:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7693786621094	2	443.261259	884.507966	-0.11429	-5.0662E-05	0.61658	0.0002733	0.50228	0.00022264	443.26141071801146	12.819	0.44763	12.819	12.699	13.147	0					31	15	3	0	0	0	0.34319	1	326	326		5.7604	0.52976	1	249460	+		13900	19735	7795	7795	17710	17710					0.0610920461731439
IAAQQNKL	8	Unmodified	_IAAQQNKL_					0	0	0			REV__ENST00000286298.4_1_5:149360345-149360531:+|nuORF	REV__ENST00000286298.4_1_5:149360345-149360531:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7693176269531	2	443.261259	884.507966	-0.1764	-7.8192E-05	0.96633	0.00042834	0.78993	0.00035015	443.2615178301497	12.847	0.49159	12.779	12.61	13.102	-0.067496					33	16	4	0	0	0	0.344	1	332	332		2.5775	2.5775	1	267980	+		13901	19735	7795	7795	17711	17711					0.0610920461731439
IAARQRGLV	9	Unmodified	_IAARQRGLV_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.3088684082031	2	492.309075	982.603597	0.21232	0.00010453	-0.11086	-5.4577E-05	0.10146	4.9948E-05	492.3089761035746	25.669	0.60302	25.669	25.475	26.078	0					34	20	3	0	0	0	0.24581	1	4109	4109		16.942	2.3606	1	233860	+		13902	13551	7796	7796	17712	17712					0.11159977528234322
IADGSSFVVS	10	Unmodified	_IADGSSFVVS_					0	0	0		ASTN2|p.G1095Wfs*12|1|0.13|ENSG00000148219|chr9:116618396-116618397|-/A|frameshift_variant;nc|ENSG00000148219|O75129-2|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2	ASTN2|p.G1095Wfs*12|1|0.13|ENSG00000148219|chr9:116618396-116618397|-/A|frameshift_variant	ASTN2|p.G1095Wfs*12|1|0.13|ENSG00000148219|chr9:116618396-116618397|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.24713134765625	2	491.248015	980.481476	0.22818	0.00011209	-0.64785	-0.00031826	-0.41968	-0.00020616	491.2475792810288	69.479	1.3712	69.457	69.153	70.524	-0.022087					98	49	3	0	0	0	0.10934	1	17515	17515		46.021	4.1813	1	2479100			13903	59	7797	7797	17713	17713					-0.009545290646542526
IAEHLNVDQSI	11	Unmodified	_IAEHLNVDQSI_					0	0	0			REV__ENSG00000050344|ENST00000056233|NFE2L3	REV__ENSG00000050344|ENST00000056233|NFE2L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.8950500488281	3	413.550698	1237.63027	0.15186	6.2801E-05	-0.51322	-0.00021224	-0.36136	-0.00014944	413.5502914200981	21.795	0.45227	21.745	21.52	21.972	-0.049377					41	16	3	0	0	0	0.39785	1	2948	2948		6.6599	1.4614	1	138150	+		13904	13563	7798	7798	17714	17714					0.020955768382464157
IAEQKRFP	8	Unmodified	_IAEQKRFP_					0	0	0		nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13	nc|ENSG00000143643|Q8NBP0-2|TTC13	nc|ENSG00000143643|Q8NBP0-2|TTC13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2666931152344	2	494.782359	987.550165	0.3423	0.00016937	0.26501	0.00013112	0.60731	0.00030049	494.7824943751904	48.762	0.57496	48.794	48.522	49.096	0.032043					35	20	2	0	0	0	0.30503	1	11224	11224		30.225	0	1	708940			13905	4538	7799	7799	17715	17715					0.05589180025708629
IAFCHGNTICT	11	Unmodified	_IAFCHGNTICT_					0	0	0			REV__ENSG00000107779|ENST00000372037|BMPR1A	REV__ENSG00000107779|ENST00000372037|BMPR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.2675170898438	2	590.267901	1178.52125	0.087827	5.1841E-05	0.18379	0.00010849	0.27162	0.00016033	590.2681968076063	14.491	0.42174	14.491	14.307	14.729	0					23	14	2	0	0	0	0.47546	1	766	766		1.3295	0	1	44606	+		13906	14563	7800	7800	17716	17716					-0.06087048657241212
IAFHTIPVI	9	Unmodified	_IAFHTIPVI_					0	0	0		nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT	nc|ENSG00000042445|Q6NUM9-2|RETSAT	nc|ENSG00000042445|Q6NUM9-2|RETSAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8054504394531	2	505.805303	1009.59605	0.28375	0.00014352	0.34013	0.00017204	0.62387	0.00031556	505.8053894922868	64.882	1.2885	64.882	64.398	65.686	0					161	46	5	0	0	0	0.037693	2	16138	16138;16185		57.471	19.32	1	4064600			13907	612	7801	7801	17717;17718	17717					0.09163825207951959
IAFHTIPVI	9	Unmodified	_IAFHTIPVI_					0	0	0		nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT	nc|ENSG00000042445|Q6NUM9-2|RETSAT	nc|ENSG00000042445|Q6NUM9-2|RETSAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.8055114746094	2	505.805303	1009.59605	0.34173	0.00017285	0.19776	0.00010003	0.53949	0.00027288	505.80527380450224	64.753	1.4804	64.846	64.445	65.925	0.09288					158	54	5	0	0	0	0.019896	2	16097	16097;16150		64.236	26.085	1	4045000			13908	612	7801	7801	17719;17720	17719					0.09163825207951959
IAFHTIPVI	9	Unmodified	_IAFHTIPVI_					0	0	0		nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT	nc|ENSG00000042445|Q6NUM9-2|RETSAT	nc|ENSG00000042445|Q6NUM9-2|RETSAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.805419921875	2	505.805303	1009.59605	0.21391	0.0001082	0.28441	0.00014386	0.49832	0.00025205	505.8052504988185	64.85	1.225	64.84	64.469	65.694	-0.010941					147	44	5	0	0	0	0.019896	2	16131	16131;16181		64.236	26.085	1	3867000			13909	612	7801	7801	17721;17722	17721					0.09163825207951959
IAFLGEWGP	9	Unmodified	_IAFLGEWGP_					0	0	0		SLC22A4|p.G267Rfs*18|1|0.04|ENSG00000197208|chr5:132322328-132322329|-/AAGAATTTCTGTTCCT|frameshift_variant;SLC22A4|p.S315Lfs*5|1|0.28|ENSG00000197208|chr5:132327394-132327394|T/-|frameshift_variant;ENSG00000197208|ENST00000200652|SLC22A4	SLC22A4|p.G267Rfs*18|1|0.04|ENSG00000197208|chr5:132322328-132322329|-/AAGAATTTCTGTTCCT|frameshift_variant	SLC22A4|p.G267Rfs*18|1|0.04|ENSG00000197208|chr5:132322328-132322329|-/AAGAATTTCTGTTCCT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7771301269531	2	495.258185	988.501818	0.52114	0.0002581	-1.1725	-0.00058067	-0.65131	-0.00032257	495.25773596277895	21.069	0.36525	21.016	20.723	21.088	-0.05291					15	12	2	0	0	0	0.25879	1	2736	2736		4.756	0.81161	1	35070			13910	7943	7802	7802	17723	17723					0.007106863858098222
IAFLMINAV	9	Oxidation (M)	_IAFLM(Oxidation (M))INAV_		IAFLM(1)INAV		IAFLM(130)INAV	0	0	1		ENST00000480937.5_1_1:25666968-25687193:+|nuORF;ENSG00000183726|ENST00000374358|TMEM50A	ENST00000480937.5_1_1:25666968-25687193:+|nuORF	ENST00000480937.5_1_1:25666968-25687193:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2833251953125	2	504.283346	1006.55214	0.3564	0.00017973	-0.45112	-0.00022749	-0.094719	-4.7765E-05	504.2829102847853	79.72	1.0054	79.72	79.289	80.294	0					109	37	4	0	0	0	0.00049634	1	20716	20716		129.2	6.1043	1	1997300			13911	7394	7803	7803	17724	17724		820			0.049124727192975115
IAFLMINAV	9	Oxidation (M)	_IAFLM(Oxidation (M))INAV_		IAFLM(1)INAV		IAFLM(120)INAV	0	0	1		ENST00000480937.5_1_1:25666968-25687193:+|nuORF;ENSG00000183726|ENST00000374358|TMEM50A	ENST00000480937.5_1_1:25666968-25687193:+|nuORF	ENST00000480937.5_1_1:25666968-25687193:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2833251953125	2	504.283346	1006.55214	0.36224	0.00018267	-0.54588	-0.00027528	-0.18363	-9.2603E-05	504.2829006787284	79.652	1.2156	79.714	79.273	80.489	0.061417					113	47	4	0	0	0	0.00097449	1	20686	20686		123.1	26.022	1	2314000			13912	7394	7803	7803	17725	17725		820			0.049124727192975115
IAFPTLGAI	9	Unmodified	_IAFPTLGAI_					0	0	0		ADGRF4|p.C549Lfs*7|1|0.05|ENSG00000153294|chr6:47714890-47714891|-/TAATGTTAAA|frameshift_variant;ENSG00000153294|ENST00000283303|ADGRF4	ADGRF4|p.C549Lfs*7|1|0.05|ENSG00000153294|chr6:47714890-47714891|-/TAATGTTAAA|frameshift_variant	ADGRF4|p.C549Lfs*7|1|0.05|ENSG00000153294|chr6:47714890-47714891|-/TAATGTTAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7706604003906	2	451.770929	901.527304	0.39906	0.00018028	-0.47954	-0.00021664	-0.080483	-3.636E-05	451.7706667525966	83.799	0.6079	83.783	83.288	83.896	-0.01683					42	25	2	0	0	0	0.1669	1	21909	21909		28.487	0	1	204930			13913	16	7804	7804	17726	17726					0.07260160908253965
IAFPTSISV	9	Unmodified	_IAFPTSISV_					0	0	0		nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4;ENST00000550166.1_1_12:56500490-56500880:+|nuORF;ENST00000418595.1_1_6:112938557-112938875:-|nuORF;ENST00000473864.1_1_3:156528118-156528448:-|nuORF;ENST00000414718.1_1_20:12360810-12361446:+|nuORF	nc|ENSG00000170515|Q9UQ80-2|PA2G4	nc|ENSG00000170515|Q9UQ80-2|PA2G4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7657775878906	2	467.765843	933.517133	-0.20085	-9.395E-05	0.52273	0.00024452	0.32189	0.00015057	467.7658992384206	73.57	0.81435	73.57	73.251	74.066	0					73	28	4	0	0	0	4.8547E-06	1	18827	18827		147.83	93.058	1	1762600			13914	6459	7805	7805	17727	17727					0.04771553183013566
IAFPTSISV	9	Unmodified	_IAFPTSISV_					0	0	0		nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4;ENST00000550166.1_1_12:56500490-56500880:+|nuORF;ENST00000418595.1_1_6:112938557-112938875:-|nuORF;ENST00000473864.1_1_3:156528118-156528448:-|nuORF;ENST00000414718.1_1_20:12360810-12361446:+|nuORF	nc|ENSG00000170515|Q9UQ80-2|PA2G4	nc|ENSG00000170515|Q9UQ80-2|PA2G4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7658996582031	2	467.765843	933.517133	-0.038294	-1.7913E-05	0.39424	0.00018441	0.35595	0.0001665	467.7658586279052	73.581	0.75305	73.634	73.254	74.007	0.05304					67	26	4	0	0	0	4.8547E-06	1	18811	18811		147.83	93.058	1	1634200			13915	6459	7805	7805	17728	17728					0.04771553183013566
IAFPTSISV	9	Unmodified	_IAFPTSISV_					0	0	0		nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4;ENST00000550166.1_1_12:56500490-56500880:+|nuORF;ENST00000418595.1_1_6:112938557-112938875:-|nuORF;ENST00000473864.1_1_3:156528118-156528448:-|nuORF;ENST00000414718.1_1_20:12360810-12361446:+|nuORF	nc|ENSG00000170515|Q9UQ80-2|PA2G4	nc|ENSG00000170515|Q9UQ80-2|PA2G4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7659912109375	2	467.765843	933.517133	0.14982	7.0081E-05	0.21609	0.00010108	0.36592	0.00017116	467.7658133628557	73.674	0.71042	73.644	73.29	74	-0.030663					66	25	4	0	0	0	4.8547E-06	1	18832	18832		147.83	93.058	1	1698800			13916	6459	7805	7805	17729	17729					0.04771553183013566
IAFSATRTI	9	Unmodified	_IAFSATRTI_					0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.28240966796875	2	490.282192	978.549831	0.57311	0.00028099	0.0058217	2.8543E-06	0.57893	0.00028384	490.2821263056153	44.854	0.84331	44.854	44.522	45.366	0					81	30	5	0	0	0	0.0028542	2	9951	9951;9999		103.42	44.741	1	1894200			13917	6717	7806	7806	17730;17731	17730					0.05969760305856653
IAFSATRTI	9	Unmodified	_IAFSATRTI_					0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2823181152344	2	490.282192	978.549831	0.47399	0.00023239	-0.017757	-8.7061E-06	0.45623	0.00022368	490.2820787049647	44.652	0.71814	44.721	44.513	45.232	0.068573					66	25	4	0	0	0	0.0028542	2	9906	9864;9906		103.42	40.847	1	2046900			13918	6717	7806	7806	17732;17733	17733					0.05969760305856653
IAFSATRTI	9	Unmodified	_IAFSATRTI_					0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.28216552734375	2	490.282192	978.549831	0.49739	0.00024386	-0.019326	-9.4753E-06	0.47806	0.00023438	490.2820810905446	44.657	0.75819	44.732	44.475	45.234	0.07505					78	27	4	0	0	0	0.0016712	2	9887	9887;9941		114.2	51.629	1	2127200			13919	6717	7806	7806	17734;17735	17734					0.05969760305856653
IAFVRLAPAV	10	Unmodified	_IAFVRLAPAV_					0	0	0		ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7	ENSG00000033867|ENST00000454389|SLC4A7	ENSG00000033867|ENST00000454389|SLC4A7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2821655273438	2	528.831852	1055.64915	0.5136	0.00027161	-0.22968	-0.00012146	0.28392	0.00015014	528.8319085365916	44.225	0.35726	44.3	44.174	44.531	0.075047					22	12	2	0	0	0	0.29519	1	9793	9793		15.847	0	1	282980			13920	564	7807	7807	17736	17736					0.12355202990579528
IAGAPPKPK	9	Unmodified	_IAGAPPKPK_					0	0	0			REV__ENST00000377242.7_1_10:20105398-20106118:+|nuORF	REV__ENST00000377242.7_1_10:20105398-20106118:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.7525329589844	2	439.776545	877.538538	0.11053	4.8607E-05	-0.78708	-0.00034614	-0.67655	-0.00029753	439.7759434859191	57.75	0.10064	57.836	57.765	57.865	0.085621					5	3	2	0	0	0	0.1659	1	13959	13959		36.044	1.8569	1	103320	+		13921	20502	7808	7808	17737	17737					0.09486983002375382
IAGKGAPRAS	10	Unmodified	_IAGKGAPRAS_					0	0	0			REV__ENSG00000137343|ENST00000330083|ATAT1	REV__ENSG00000137343|ENST00000330083|ATAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.7872009277344	2	464.272158	926.529764	0.35119	0.00016305	-1.3048	-0.00060576	-0.95357	-0.00044271	464.2716433959573	77.666	0.91576	77.666	77.228	78.144	0					55	33	2	0	0	0	0.3156	1	19954	19954		10.824	1.4765	1	193200	+		13922	15857	7809	7809	17738	17738					0.06356009365890714
IAGREPLR	8	Unmodified	_IAGREPLR_					0	0	0		ENST00000344111.3_1_7:1007216-1007399:-|nuORF	ENST00000344111.3_1_7:1007216-1007399:-|nuORF	ENST00000344111.3_1_7:1007216-1007399:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2748718261719	2	456.274701	910.534849	0.029611	1.3511E-05	0.41534	0.00018951	0.44495	0.00020302	456.2747932251959	27.088	0.54255	27.066	26.839	27.382	-0.021412					40	18	3	0	0	0	0.31518	1	4566	4566		29.082	1.4528	1	211960			13923	9552	7810	7810	17739	17739					0.07600313228510913
IAGREPLR	8	Unmodified	_IAGREPLR_					0	0	0		ENST00000344111.3_1_7:1007216-1007399:-|nuORF	ENST00000344111.3_1_7:1007216-1007399:-|nuORF	ENST00000344111.3_1_7:1007216-1007399:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	456.274701	910.534849	0.10331	4.7137E-05	0.45651	0.0002083	0.55982	0.00025543	456.27480212503013	27.118	0.61816	27.106	26.851	27.469	-0.01156	0.022955	5.1163E-05	NaN	29.082	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206020			13924	9552	7810	7810							0.07600313228510913
IAGTIRIDFEK	11	Unmodified	_IAGTIRIDFEK_					0	0	0		ENSG00000122729|ENST00000309951|ACO1	ENSG00000122729|ENST00000309951|ACO1	ENSG00000122729|ENST00000309951|ACO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	631.8590698242188	2	631.858795	1261.70304	0.26798	0.00016933	0.070538	4.457E-05	0.33852	0.0002139	631.8587986364834	67.191	0.75777	67.269	67.012	67.77	0.078041					72	26	4	0	0	0	0.24435	1	16938	16938		27.223	1.2025	1	1445100			13925	3066	7811	7811	17740	17740					0.0826533063163879
IAGVTGLVISL	11	Unmodified	_IAGVTGLVISL_					0	0	0		ENSG00000074771|ENST00000159060|NOX3	ENSG00000074771|ENST00000159060|NOX3	ENSG00000074771|ENST00000159060|NOX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8167114257812	2	521.828975	1041.6434	0.5839	0.0003047	0.7286	0.0003802	1.3125	0.0006849	521.829199437209	45.294	0.54442	45.294	45.069	45.614	0					25	19	2	0	0	0	0.34542	1	10193	10193		18.146	1.0335	1	219250			13926	1027	7812	7812	17741	17741					0.12424059688282796
IAGVTHLLP	9	Unmodified	_IAGVTHLLP_					0	0	0		CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.2193298339844	2	460.781828	919.549102	-0.14995	-6.9094E-05	0.27651	0.00012741	0.12656	5.8318E-05	460.7817854226922	42.61	0.92311	42.61	42.193	43.116	0					60	33	2	0	0	0	0.21905	1	9269	9269		23.148	5.0134	1	357420			13927	241	7813	7813	17742	17742					0.08610965656805547
IAGVTHLLP	9	Unmodified	_IAGVTHLLP_					0	0	0		CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.26580810546875	2	460.781828	919.549102	0.034325	1.5816E-05	0.10787	4.9706E-05	0.1422	6.5522E-05	460.7817899038503	42.454	1.1244	42.54	41.906	43.03	0.085197					74	40	2	0	0	0	0.18943	1	9320	9320		30.225	5.5509	1	346590			13928	241	7813	7813	17743	17743					0.08610965656805547
IAGVTHLLP	9	Unmodified	_IAGVTHLLP_					0	0	0		CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.265869140625	2	460.781828	919.549102	0.14925	6.877E-05	0.025446	1.1725E-05	0.17469	8.0495E-05	460.78177811883023	42.535	1.0851	42.627	41.957	43.043	0.091362					69	38	2	0	0	0	0.21905	1	9252	9252		23.148	15.238	1	375550			13929	241	7813	7813	17744	17744					0.08610965656805547
IAGYYQKTRLI	11	Unmodified	_IAGYYQKTRLI_					0	0	0			REV__ENST00000295148.8_1_2:24253451-24253565:-|nuORF	REV__ENST00000295148.8_1_2:24253451-24253565:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.5907287597656	3	442.590717	1324.75032	0.10496	4.6454E-05	-0.28456	-0.00012594	-0.1796	-7.9488E-05	442.5906294985007	46.168	1.1468	46.168	45.666	46.813	0					141	41	5	0	0	0	0.36161	1	10312	10312		16.275	16.275	1	10377000	+		13930	19776	7814	7814	17745	17745					0.10093609902651224
IAHLHLNTV	9	Unmodified	_IAHLHLNTV_					0	0	0		ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.28228759765625	2	509.295633	1016.57671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.567	1	26.529	26.029	27.029	-0.038671								0	0	0	0.23367	1	4395	4395		11.64	3.047	1				13931	6772	7815	7815	17746	17746					0.06908868917048494
IAIGKVLKL	9	Unmodified	_IAIGKVLKL_					0	0	0		ENSG00000189369|ENST00000340438|GSPT2;nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170|GSPT1	ENSG00000189369|ENST00000340438|GSPT2	ENSG00000189369|ENST00000340438|GSPT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.26385498046875	2	477.839146	953.663738	0.63174	0.00030187	-0.23131	-0.00011053	0.40043	0.00019134	477.83904085133406	50.845	0.39325	50.854	50.675	51.068	0.0095634					23	14	2	0	0	0	0.21389	1	11800	11800		25.399	9.5521	1	128170			13932	1829	7816	7816	17747	17747					0.1850527513875022
IAIGKVLKL	9	Unmodified	_IAIGKVLKL_					0	0	0		ENSG00000189369|ENST00000340438|GSPT2;nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170|GSPT1	ENSG00000189369|ENST00000340438|GSPT2	ENSG00000189369|ENST00000340438|GSPT2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	477.839146	953.663738	0.5358	0.00025603	0.1162	5.5527E-05	0.652	0.00031155	477.8390439476611	50.831	0.40533	50.877	50.713	51.118	0.046574	0.022412	0.00020425	NaN	25.399	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227740			13933	1829	7816	7816							0.1850527513875022
IAILWFLC	8	Unmodified	_IAILWFLC_					0	0	0			REV__ENST00000420036.1_1_2:33827231-33827309:+|nuORF	REV__ENST00000420036.1_1_2:33827231-33827309:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.79705810546875	2	489.777699	977.540846	0.59206	0.00028998	2.5825	0.0012649	3.1746	0.0015548	489.77904397763535	83.378	0.44837	83.378	83.2	83.648	0					25	16	2	0	0	0	0.33618	1	21756	21756		17.087	1.2394	1	87892	+		13934	20849	7817	7817	17748	17748					0.05117695415822254
IAILWFLC	8	Unmodified	_IAILWFLC_					0	0	0			REV__ENST00000420036.1_1_2:33827231-33827309:+|nuORF	REV__ENST00000420036.1_1_2:33827231-33827309:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.79718017578125	2	489.777699	977.540846	0.52389	0.00025659	2.7133	0.0013289	3.2372	0.0015855	489.7790424799966	83.329	0.45658	83.309	83.183	83.639	-0.020576					24	18	2	0	0	0	0.34147	1	21742	21742		11.114	0	1	109470	+		13935	20849	7817	7817	17749	17749					0.05117695415822254
IAKCCALLL	9	Unmodified	_IAKCCALLL_					0	0	0			REV__ENST00000389682.7_1_2:122524795-122524870:+|nuORF	REV__ENST00000389682.7_1_2:122524795-122524870:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.76385498046875	2	474.274467	946.53438	0.025016	1.1864E-05	0.47604	0.00022577	0.50105	0.00023764	474.2747555818001	22.174	0.39429	22.174	21.966	22.36	0					28	13	3	0	0	0	0.25417	1	3033	3033		8.5933	0	1	136120	+		13936	20579	7818	7818	17750	17750					0.05897434192797846
IAKIPNFGVT	10	Unmodified	_IAKIPNFGVT_					0	0	0		ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP;ENST00000514799.1_1_5:59755891-59756539:-|nuORF	ENSG00000230667|ENST00000596516|SETSIP	ENSG00000230667|ENST00000596516|SETSIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3135375976562	2	530.313492	1058.61243	0.33302	0.00017661	-0.18468	-9.7937E-05	0.14835	7.8669E-05	530.313325112479	41.121	0.53304	41.211	40.978	41.511	0.090248					40	19	3	0	0	0	0.33817	1	8847	8847		14.838	2.5976	1	432550			13937	8468	7819	7819	17751	17751					0.08546906374044738
IAKIPNFGVT	10	Unmodified	_IAKIPNFGVT_					0	0	0		ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP;ENST00000514799.1_1_5:59755891-59756539:-|nuORF	ENSG00000230667|ENST00000596516|SETSIP	ENSG00000230667|ENST00000596516|SETSIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3137817382812	2	530.313492	1058.61243	0.29038	0.00015399	0.061299	3.2508E-05	0.35168	0.0001865	530.313407476025	41.033	0.46133	41.13	40.909	41.37	0.096626					38	16	3	0	0	0	0.29978	1	8796	8796		20.454	9.6297	1	601520			13938	8468	7819	7819	17752	17752					0.08546906374044738
IAKIPNFGVT	10	Unmodified	_IAKIPNFGVT_					0	0	0		ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP;ENST00000514799.1_1_5:59755891-59756539:-|nuORF	ENSG00000230667|ENST00000596516|SETSIP	ENSG00000230667|ENST00000596516|SETSIP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	530.313492	1058.61243	0.37565	0.00019921	-0.27804	-0.00014745	0.097611	5.1764E-05	530.3132904199621	41.507	0.40323	41.507	41.152	41.555	0	0.22412	-0.00018655	NaN	20.454	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	859160			13939	8468	7819	7819							0.08546906374044738
IAKIQQSTV	9	Unmodified	_IAKIQQSTV_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7872314453125	2	494.295299	986.576045	0.80747	0.00039913	1.0976	0.00054256	1.9051	0.00094169	494.2958544223936	47.465	0.42284	47.508	47.323	47.746	0.04332					29	15	2	0	0	0	0.12563	1	10742	10742		39.95	12.726	1	508370			13940	2029	7820	7820	17753	17753					0.08222029477326487
IAKKNGKSL	9	Unmodified	_IAKKNGKSL_					0	0	0		nc|ENSG00000112499|O15244-2|SLC22A2;ENSG00000112499|ENST00000366953|SLC22A2	nc|ENSG00000112499|O15244-2|SLC22A2	nc|ENSG00000112499|O15244-2|SLC22A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.8056640625	2	479.805834	957.597115	-0.17885	-8.5813E-05	-0.060965	-2.9251E-05	-0.23981	-0.00011506	479.8056304678971	12.311	0.20459	12.243	12.14	12.345	-0.06806					12	6	3	0	0	0	0.30459	1	92	92		8.1555	2.4237	1	88580			13941	2437	7821	7821	17754	17754					0.11662039576845018
IAKKNGKSL	9	Unmodified	_IAKKNGKSL_					0	0	0		nc|ENSG00000112499|O15244-2|SLC22A2;ENSG00000112499|ENST00000366953|SLC22A2	nc|ENSG00000112499|O15244-2|SLC22A2	nc|ENSG00000112499|O15244-2|SLC22A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	479.805834	957.597115	-0.17506	-8.3996E-05	-0.35322	-0.00016948	-0.52828	-0.00025347	479.805669205799	12.293	0.16954	12.293	12.194	12.364	0	0.048902	-3.7104E-05	NaN	8.1555	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84964			13942	2437	7821	7821							0.11662039576845018
IAKKNGKSL	9	Unmodified	_IAKKNGKSL_					0	0	0		nc|ENSG00000112499|O15244-2|SLC22A2;ENSG00000112499|ENST00000366953|SLC22A2	nc|ENSG00000112499|O15244-2|SLC22A2	nc|ENSG00000112499|O15244-2|SLC22A2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.805834	957.597115	-0.02838	-1.3617E-05	-0.51139	-0.00024537	-0.53977	-0.00025899	479.80551382586424	12.293	0.17281	12.196	12.122	12.295	-0.096607	-0.04775	-0.00018889	NaN	8.1555	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102080			13943	2437	7821	7821							0.11662039576845018
IAKVLEDNKL	10	Unmodified	_IAKVLEDNKL_					0	0	0		nc|ENSG00000164904|P49419-4|ALDH7A1;nc|ENSG00000164904|P49419-2|ALDH7A1;ENSG00000164904|ENST00000409134|ALDH7A1	nc|ENSG00000164904|P49419-4|ALDH7A1	nc|ENSG00000164904|P49419-4|ALDH7A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.8434448242188	2	571.842613	1141.67067	0.51917	0.00029689	0.71815	0.00041067	1.2373	0.00070756	571.8429578465953	40.593	0.45725	40.686	40.448	40.905	0.09267					39	16	3	0	0	0	0.34483	1	8660	8660		13.615	4.0709	1	584670			13944	5896	7822	7822	17755	17755					0.10550543228669085
IALAEQLSI	9	Unmodified	_IALAEQLSI_					0	0	0			REV__nc|ENSG00000131471|Q16853-2|AOC3	REV__nc|ENSG00000131471|Q16853-2|AOC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2976379394531	2	479.2844	956.554247	0.20072	9.6203E-05	0.37662	0.00018051	0.57734	0.00027671	479.28445594208125	62.824	0.53758	62.824	62.58	63.117	0					47	19	3	0	0	0	0.17277	1	15597	15597		27.629	3.6082	1	839760	+		13945	15516	7823	7823	17756	17756					0.07423224728779587
IALAEQLSI	9	Unmodified	_IALAEQLSI_					0	0	0			REV__nc|ENSG00000131471|Q16853-2|AOC3	REV__nc|ENSG00000131471|Q16853-2|AOC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.297607421875	2	479.2844	956.554247	0.31476	0.00015086	0.13766	6.5978E-05	0.45241	0.00021683	479.2843757828972	62.757	0.68387	62.852	62.544	63.228	0.095722					52	24	3	0	0	0	0.17277	1	15558	15558		27.629	2.2295	1	775300	+		13946	15516	7823	7823	17757	17757					0.07423224728779587
IALAEQLSI	9	Unmodified	_IALAEQLSI_					0	0	0			REV__nc|ENSG00000131471|Q16853-2|AOC3	REV__nc|ENSG00000131471|Q16853-2|AOC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.29754638671875	2	479.2844	956.554247	0.22025	0.00010556	0.072198	3.4603E-05	0.29245	0.00014017	479.2843337578549	62.825	0.64713	62.816	62.57	63.217	-0.0085564					53	23	4	0	0	0	0.21447	1	15586	15586		21.537	2.28	1	802750	+		13947	15516	7823	7823	17758	17758					0.07423224728779587
IALFRLLVMY	10	Unmodified	_IALFRLLVMY_					0	0	0		ENST00000355773.5_1_6:74325102-74331662:-|nuORF	ENST00000355773.5_1_6:74325102-74331662:-|nuORF	ENST00000355773.5_1_6:74325102-74331662:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8693237304688	2	619.87012	1237.72569	0.15077	9.3455E-05	-1.4857	-0.00092092	-1.3349	-0.00082747	619.869235279191	101.85	0.21172	101.84	101.7	101.91	-0.0054779					43	29	2	0	0	0	0.40888	1	27149	27149		1.8442	0.36234	1	136750			13948	9612	7824	7824	17759	17759					0.11633258495589871
IALGTRFI	8	Unmodified	_IALGTRFI_					0	0	0		nc|ENSG00000172456|Q96C11-6|FGGY;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY;ENST00000493891.5_1_1:60103921-60223658:+|nuORF;ENST00000466791.5_1_1:60103921-60146476:+|nuORF	nc|ENSG00000172456|Q96C11-6|FGGY	nc|ENSG00000172456|Q96C11-6|FGGY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.7763977050781	2	445.776545	889.538538	0.43068	0.00019199	-0.43924	-0.0001958	-0.0085577	-3.8148E-06	445.7762521726335	53.548	1.0672	53.548	53.201	54.268	0					77	39	3	0	0	0	0.11736	1	12642	12642		57.471	6.6163	1	1589900			13949	6634	7825	7825	17760	17760					0.089349830023707
IALGTRFI	8	Unmodified	_IALGTRFI_					0	0	0		nc|ENSG00000172456|Q96C11-6|FGGY;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY;ENST00000493891.5_1_1:60103921-60223658:+|nuORF;ENST00000466791.5_1_1:60103921-60146476:+|nuORF	nc|ENSG00000172456|Q96C11-6|FGGY	nc|ENSG00000172456|Q96C11-6|FGGY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.7765808105469	2	445.776545	889.538538	0.10487	4.6751E-05	-0.042697	-1.9033E-05	0.062178	2.7717E-05	445.77645902142274	53.482	0.83438	53.538	53.247	54.081	0.056255					65	31	3	0	0	0	0.072895	1	12630	12630		67.344	3.1075	1	1892700			13950	6634	7825	7825	17761	17761					0.089349830023707
IALHSKGRKFE	11	Unmodified	_IALHSKGRKFE_					0	0	0			REV__CNNM3|p.V460Wfs*2|1|0.21|ENSG00000168763|chr2:96826839-96826839|C/-|frameshift_variant	REV__CNNM3|p.V460Wfs*2|1|0.21|ENSG00000168763|chr2:96826839-96826839|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.2510070800781	3	429.250695	1284.73025	0.038774	1.6644E-05	-0.35957	-0.00015435	-0.32079	-0.0001377	429.2509589343227	50.166	1.7557	50.166	49.701	51.456	0					221	64	6	0	0	0	0.2777	1	11601	11601		24.229	1.7425	1	33589000	+		13951	13234	7826	7826	17762	17762					0.09927858962691971
IALHSKGRKFE	11	Unmodified	_IALHSKGRKFE_					0	0	0			REV__CNNM3|p.V460Wfs*2|1|0.21|ENSG00000168763|chr2:96826839-96826839|C/-|frameshift_variant	REV__CNNM3|p.V460Wfs*2|1|0.21|ENSG00000168763|chr2:96826839-96826839|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.25048828125	3	429.250695	1284.73025	0.35376	0.00015185	-0.64564	-0.00027714	-0.29187	-0.00012529	429.2508661638446	50.137	1.7778	50.182	49.749	51.526	0.044891					219	66	6	0	0	0	0.2777	2	11542	11542;11776		24.229	3.8177	1	31897000	+		13952	13234	7826	7826	17763;17764	17763					0.09927858962691971
IALLLSHLV	9	Unmodified	_IALLLSHLV_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.82122802734375	2	489.820953	977.627353	0.48208	0.00023613	-0.43241	-0.0002118	0.049674	2.4331E-05	489.82061223535635	49.924	0.58201	49.944	49.67	50.252	0.020691					48	21	3	0	0	0	0.193	1	11567	11567		24.674	1.5255	1	709870	+		13953	16382	7827	7827	17765	17765					0.13764398242039988
IALNMYNFASR	11	Unmodified	_IALNMYNFASR_					0	0	0		ENSG00000155970|ENST00000318063|MICU3	ENSG00000155970|ENST00000318063|MICU3	ENSG00000155970|ENST00000318063|MICU3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.5751647949219	3	433.888657	1298.64414	0.15859	6.8812E-05	0.26974	0.00011704	0.42833	0.00018585	433.8887528652415	32.562	1.5682	32.618	32.097	33.665	0.055309					87	56	3	0	0	0	0.32951	1	6448	6448		2.4348	0	1	292000			13954	5210	7828	7828	17766	17766					0.006765310656646761
IALVLRPGL	9	Unmodified	_IALVLRPGL_					0	0	0			REV__ENSG00000170348|ENST00000303575|TMED10	REV__ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.30657958984375	2	476.32112	950.627687	0.073726	3.5117E-05	0.090798	4.3249E-05	0.16452	7.8366E-05	476.32090048456314	67.27	0.41217	67.254	66.981	67.393	-0.016304					20	13	2	0	0	0	0.22883	1	16906	16906		19.439	4.8573	1	114240	+		13955	17574	7829	7829	17767	17767					0.1503981796190601
IALVLRPGL	9	Unmodified	_IALVLRPGL_					0	0	0			REV__ENSG00000170348|ENST00000303575|TMED10	REV__ENSG00000170348|ENST00000303575|TMED10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	476.32112	950.627687	0.18976	9.0386E-05	0.049879	2.3758E-05	0.23964	0.00011414	476.32107987403214	67.113	0.36917	67.191	66.957	67.326	0.078041	-0.016651	5.0692E-06	NaN	19.439	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109150	+		13956	17574	7829	7829							0.1503981796190601
IALVLRPGL	9	Unmodified	_IALVLRPGL_					0	0	0			REV__ENSG00000170348|ENST00000303575|TMED10	REV__ENSG00000170348|ENST00000303575|TMED10	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	476.32112	950.627687	0.073726	3.5117E-05	0.090798	4.3249E-05	0.16452	7.8366E-05	476.32090048456314	67.27	0.41217	67.254	66.981	67.393	-0.016304	0.046179	4.405E-05	NaN	19.439	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114240	+		13957	17574	7829	7829							0.1503981796190601
IALYFLSLV	9	Unmodified	_IALYFLSLV_					0	0	0		ENST00000524925.1_1_11:77817969-77825348:-|nuORF	ENST00000524925.1_1_11:77817969-77825348:-|nuORF	ENST00000524925.1_1_11:77817969-77825348:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.8423461914062	2	519.815336	1037.61612	0.34723	0.0001805	0.83907	0.00043616	1.1863	0.00061666	519.816009209387	52.977	0.26838	52.967	52.761	53.03	-0.0096054					17	9	2	0	0	0	0.24739	1	12484	12484		13.508	3.3245	1	1648000			13958	11529	7830	7830	17768	17768					0.09881576147904525
IALYLYLSIVR	11	Unmodified	_IALYLYLSIVR_					0	0	0		ENSG00000180758|ENST00000377411|GPR157	ENSG00000180758|ENST00000377411|GPR157	ENSG00000180758|ENST00000377411|GPR157	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.9396057128906	3	441.939346	1322.79621	0.30257	0.00013372	0.28311	0.00012512	0.58568	0.00025884	441.9395402285558	49.404	1.1797	49.404	48.773	49.953	0					142	42	5	0	0	0	0.46554	1	11264	11264		2.6312	0.19645	1	806890			13959	7198	7831	7831	17769	17769					0.14772255084858443
IAMATVTAL	9	Oxidation (M)	_IAM(Oxidation (M))ATVTAL_		IAM(1)ATVTAL		IAM(85)ATVTAL	0	0	1		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.7518005371094	2	453.751879	905.489204	0.085419	3.8759E-05	-0.43389	-0.00019688	-0.34847	-0.00015812	453.7516577291511	49.543	0.65533	49.575	49.295	49.951	0.032043					38	23	2	0	0	0	0.0061338	1	11455	11455		85.357	21.12	1	298010			13960	4896;2236	7832	7832	17770	17770		276			0.032679069312507636
IAMATVTAL	9	Oxidation (M)	_IAM(Oxidation (M))ATVTAL_					0	0	1		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	453.751879	905.489204	0.25033	0.00011359	-0.34789	-0.00015785	-0.097552	-4.4264E-05	453.75165446524113	49.604	0.57221	49.604	49.351	49.923	0	-0.0077672	-1.4271E-05	NaN	85.357	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308750			13961	4896;2236	7832	7832				276			0.032679069312507636
IAMATVTAL	9	Oxidation (M)	_IAM(Oxidation (M))ATVTAL_					0	0	1		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	453.751879	905.489204	0.1452	6.5885E-05	-0.22044	-0.00010003	-0.075242	-3.4141E-05	453.7517482989303	49.612	0.56288	49.657	49.342	49.905	0.044891	0.044966	0.00010138	NaN	85.357	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342890			13962	4896;2236	7832	7832				276			0.032679069312507636
IAMKHLPL	8	Unmodified	_IAMKHLPL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.5977783203125	2	461.780773	921.546994	-0.34303	-0.00015841	0.80496	0.00037171	0.46192	0.00021331	461.7813562531522	35.378	0.38179	35.455	35.308	35.69	0.077377					18	13	2	0	0	0	0.34297	1	7060	7060		2.8892	0	1	297160	+		13963	13586	7833	7833	17771	17771					0.08308213647353568
IANHQVLII	9	Unmodified	_IANHQVLII_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.81353759765625	2	510.813659	1019.61277	0.40374	0.00020624	-0.064144	-3.2766E-05	0.3396	0.00017347	510.81356973355554	50.054	0.84236	50.054	49.843	50.686	0					89	30	4	0	0	0	0.10111	1	11595	11595		42.095	7.6928	1	2729800			13964	8239	7834	7834	17772	17772					0.10374326093915442
IANHQVLII	9	Unmodified	_IANHQVLII_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.81298828125	2	510.813659	1019.61277	0.6488	0.00033142	-0.31409	-0.00016044	0.33471	0.00017097	510.813419229683	50.045	0.83458	50.09	49.877	50.711	0.044891					92	30	4	0	0	0	0.12846	1	11546	11546		34.102	3.4659	1	2359100			13965	8239	7834	7834	17773	17773					0.10374326093915442
IANHQVLII	9	Unmodified	_IANHQVLII_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.81365966796875	2	510.813659	1019.61277	0.62442	0.00031896	-0.52688	-0.00026914	0.097533	4.9821E-05	510.81351610594993	50.047	1.0426	50.068	49.67	50.712	0.020691					104	38	4	0	0	0	0.11486	1	11595	11595		39.957	9.7325	1	2548700			13966	8239	7834	7834	17774	17774					0.10374326093915442
IANLNPKQKW	10	Unmodified	_IANLNPKQKW_					0	0	0			REV__ENST00000459625.5_1_12:48179068-48183703:-|nuORF	REV__ENST00000459625.5_1_12:48179068-48183703:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.8792724609375	2	606.348397	1210.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.98	1	112.97	112.47	113.47	-0.017303								0	0	0	0.38166	1	29377	29377		1.4819	0.15237	1		+		13967	13623	7835	7835	17775	17775					0.08532785042666546
IANQKNRLV	9	Unmodified	_IANQKNRLV_					0	0	0		ENST00000436772.1_1_1:155168332-155170164:+|nuORF	ENST00000436772.1_1_1:155168332-155170164:+|nuORF	ENST00000436772.1_1_1:155168332-155170164:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3198852539062	2	528.31964	1054.62473	0.5019	0.00026516	-0.038266	-2.0216E-05	0.46363	0.00024495	528.3195695601338	26.981	0.99433	26.97	26.651	27.645	-0.01156					79	34	3	0	0	0	0.27532	1	4545	4545		12.532	0.29089	1	645830			13968	10526	7836	7836	17776	17776					0.09959942837076596
IANTVELRV	9	Unmodified	_IANTVELRV_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.80078125	2	507.800749	1013.58694	0.51174	0.00025986	-0.20032	-0.00010172	0.31142	0.00015814	507.80053740046264	45.413	0.82318	45.413	45.121	45.945	0					80	29	4	0	0	0	0.00024732	1	10140	10140		132.38	43.426	1	1991500			13969	2840	7837	7837	17777	17777					0.08069431851606623
IANTVELRV	9	Unmodified	_IANTVELRV_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.8006896972656	2	507.800749	1013.58694	0.52156	0.00026485	-0.24794	-0.0001259	0.27362	0.00013895	507.80054115863226	45.278	0.87651	45.342	44.947	45.823	0.063553					86	30	4	0	0	0	0.00024732	2	10123	10074;10123		132.38	43.426	1	2170900			13970	2840	7837	7837	17778;17779	17779					0.08069431851606623
IANTVELRV	9	Unmodified	_IANTVELRV_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.80078125	2	507.800749	1013.58694	0.38794	0.000197	-0.063987	-3.2493E-05	0.32396	0.0001645	507.8005993963604	45.25	0.85403	45.315	44.849	45.703	0.065327					88	31	4	0	0	0	6.0404E-05	2	10116	10072;10116		147.24	67.644	1	2196900			13971	2840	7837	7837	17780;17781	17781					0.08069431851606623
IAPDGPSLL	9	Unmodified	_IAPDGPSLL_					0	0	0			REV__ENSG00000198677|ENST00000358746|SKIC3	REV__ENSG00000198677|ENST00000358746|SKIC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7919921875	2	441.750193	881.485833	0.20333	8.9822E-05	0.021579	9.5327E-06	0.22491	9.9355E-05	441.75008324939176	52.362	1.8124	52.362	51.809	53.622	0					106	66	2	0	0	0	0.23147	1	12121	12121		8.5933	0	1	833740	+		13972	18842	7838	7838	17782	17782					0.04034980148901468
IAPEPELPLPP	11	Unmodified	_IAPEPELPLPP_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8338623046875	2	586.831714	1171.64888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.094	1	81.067	80.567	81.567	-0.026825								0	0	0	0.36137	1	21091	21091		5.7319	2.1354	1		+		13973	18850	7839	7839	17783	17783					0.06991738480087406
IAPKLLQI	8	Unmodified	_IAPKLLQI_					0	0	0		nc|ENSG00000172139|Q4G0N8-2|SLC9C1;ENSG00000172139|ENST00000305815|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.30194091796875	2	448.302396	894.590239	0.59059	0.00026476	-0.58911	-0.0002641	0.0014758	6.6162E-07	448.3020444314947	54.725	0.77416	54.725	54.374	55.148	0					59	27	3	0	0	0	0.13961	1	13063	13063		53.576	0	1	1180500			13974	6604	7840	7840	17784	17784					0.1387272669627464
IAPKLLQI	8	Unmodified	_IAPKLLQI_					0	0	0		nc|ENSG00000172139|Q4G0N8-2|SLC9C1;ENSG00000172139|ENST00000305815|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.3022155761719	2	448.302396	894.590239	0.46787	0.00020975	-0.45817	-0.0002054	0.0097043	4.3505E-06	448.3020972464839	54.683	0.69483	54.746	54.382	55.077	0.063202					59	25	4	0	0	0	0.17536	1	12985	12985		63.563	0	1	1172000			13975	6604	7840	7840	17785	17785					0.1387272669627464
IAPKLLQI	8	Unmodified	_IAPKLLQI_					0	0	0		nc|ENSG00000172139|Q4G0N8-2|SLC9C1;ENSG00000172139|ENST00000305815|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.3020935058594	2	448.302396	894.590239	0.55871	0.00025047	-0.64419	-0.00028879	-0.085486	-3.8324E-05	448.30203509982204	54.718	1.0426	54.702	54.31	55.352	-0.015919					56	37	2	0	0	0	0.19197	1	13078	13078		44.407	0	1	1353000			13976	6604	7840	7840	17786	17786					0.1387272669627464
IAPPPPPYT	9	Unmodified	_IAPPPPPYT_					0	0	0		PROSER1|p.R529Gfs*27|1|0.06|ENSG00000120685|chr13:39013667-39013668|-/ACTCC|frameshift_variant;nc|ENSG00000120685|Q86XN7-2|PROSER1;ENSG00000120685|ENST00000352251|PROSER1	PROSER1|p.R529Gfs*27|1|0.06|ENSG00000120685|chr13:39013667-39013668|-/ACTCC|frameshift_variant	PROSER1|p.R529Gfs*27|1|0.06|ENSG00000120685|chr13:39013667-39013668|-/ACTCC|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.7686767578125	2	476.760561	951.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.039	1	72.012	71.512	72.512	-0.027275								0	0	0	0.24522	1	18330	18330		7.9102	0	1				13977	2955	7841	7841	17787	17787					0.028875705285713593
IAPRWSLEALG	11	Unmodified	_IAPRWSLEALG_					0	0	0			REV__ENST00000587928.5_1_19:10792469-10795138:+|nuORF	REV__ENST00000587928.5_1_19:10792469-10795138:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5526123046875	3	404.896029	1211.66626	-0.25396	-0.00010283	-1.7169	-0.00069515	-1.9708	-0.00079798	404.8948177388088	22.695	0.17651	22.65	22.583	22.76	-0.044867					7	5	2	0	0	0	0.33255	1	3221	3221		1.2148	0.021489	1	10505	+		13978	22540	7842	7842	17788	17788					0.06889078805738791
IAPSRPWAL	9	Unmodified	_IAPSRPWAL_					0	0	0		ENST00000559180.1_1_10:135086915-135090354:-|nuORF;nc|ENSG00000151651|P78325-3|ADAM8;ENSG00000151651|ENST00000445355|ADAM8	ENST00000559180.1_1_10:135086915-135090354:-|nuORF	ENST00000559180.1_1_10:135086915-135090354:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2769470214844	2	505.792727	1009.5709	0.18051	9.1302E-05	0.43669	0.00022087	0.6172	0.00031218	505.79274659048366	57.681	0.40541	57.664	57.416	57.821	-0.0172					17	14	2	0	0	0	0.24688	1	13928	13928		14.838	0	1	266390			13979	4971	7843	7843	17789	17789					0.06649770405374511
IAPSTPRGSRS	11	Unmodified	_IAPSTPRGSRS_					0	0	0		ENST00000290759.8_1_15:76629068-76629140:+|nuORF	ENST00000290759.8_1_15:76629068-76629140:+|nuORF	ENST00000290759.8_1_15:76629068-76629140:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.820556640625	2	564.809636	1127.60472	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.371	1	81.44	80.94	81.94	0.068993								0	0	0	0.35514	1	21184	21184		7.1017	0.37856	1				13980	9151	7844	7844	17790	17790					0.04602147106470511
IAPSYARIS	9	Unmodified	_IAPSYARIS_					0	0	0			REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.81317138671875	2	489.274367	976.53418	0.56143	0.00027469	0.47179	0.00023084	1.0332	0.00050553	489.2744876692335	51.019	0.67228	51.028	50.675	51.347	0.0095634					49	25	3	0	0	0	0.21905	1	11792	11792		11.64	0	1	549190	+		13981	14328	7845	7845	17791	17791					0.04497473788796924
IAPVTLKV	8	Unmodified	_IAPVTLKV_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.5830383300781	2	420.781296	839.54804	0.27911	0.00011744	-0.30783	-0.00012953	-0.028717	-1.2084E-05	420.78110073765805	47.06	0.73449	47.06	46.873	47.608	0					52	25	3	0	0	0	0.32937	1	10623	10623		17.113	7.7298	1	1370300			13982	5048	7846	7846	17792	17792					0.12184751287895779
IAQDHRSSL	9	Unmodified	_IAQDHRSSL_					0	0	0		ENST00000523711.5_1_8:1824717-1874701:+|nuORF;nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10	ENST00000523711.5_1_8:1824717-1874701:+|nuORF	ENST00000523711.5_1_8:1824717-1874701:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.824951171875	2	513.76998	1025.52541	0.069201	3.5553E-05	-4.4562	-0.0022894	-4.387	-0.0022539	513.7679693410055	33.34	0.44563	33.406	33.132	33.577	0.066704					25	15	2	0	0	0	0.24913	1	6451	6451		4.3292	0	1	107580			13983	1908	7847	7847	17793	17793					0.013665001523349929
IAQERQKQLE	10	Unmodified	_IAQERQKQLE_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;KIF13B|p.P1191Qfs*10|1|0.22|ENSG00000197892|chr8:29118956-29118956|G/-|frameshift_variant	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8974304199219	3	414.89821	1241.6728	-0.048585	-2.0158E-05	-0.581	-0.00024105	-0.62958	-0.00026121	414.89809057386833	18.279	1.0265	18.221	17.819	18.846	-0.058174					109	36	5	0	0	0	0.38287	1	1961	1961		6.6235	1.9075	1	1296100			13984	8011	7848	7848	17794	17794					0.06162971966477926
IAQGLIRAGK	10	Unmodified	_IAQGLIRAGK_					0	0	0		ENST00000482616.1_1_8:144689086-144691718:-|nuORF;nc|ENSG00000104524|Q53H96-2|PYCR3;ENSG00000104524|ENST00000495276|PYCR3	ENST00000482616.1_1_8:144689086-144691718:-|nuORF	ENST00000482616.1_1_8:144689086-144691718:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.3262329101562	2	513.824558	1025.63456	0.28728	0.00014761	0.095786	4.9217E-05	0.38306	0.00019683	513.824740209512	33.267	1.2214	33.323	33.002	34.224	0.055309					101	43	4	0	0	0	0.34325	1	6470	6470		13.906	0.39817	1	3811300			13985	1898	7849	7849	17795	17795					0.12277130842471706
IAQYRDTI	8	Unmodified	_IAQYRDTI_					0	0	0		ENST00000489991.1_1_3:132349350-132378619:-|nuORF	ENST00000489991.1_1_3:132349350-132378619:-|nuORF	ENST00000489991.1_1_3:132349350-132378619:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7305603027344	2	490.263999	978.513445	0.21229	0.00010408	0.067179	3.2935E-05	0.27947	0.00013701	490.2641886250676	19.316	0.48275	19.2	19.005	19.488	-0.11592					23	16	2	0	0	0	0.34337	1	2252	2252		5.2307	0.47466	1	35013			13986	11157	7850	7850	17796	17796					0.023328834091330464
IAQYRDTI	8	Unmodified	_IAQYRDTI_					0	0	0		ENST00000489991.1_1_3:132349350-132378619:-|nuORF	ENST00000489991.1_1_3:132349350-132378619:-|nuORF	ENST00000489991.1_1_3:132349350-132378619:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	490.263999	978.513445	0.10169	4.9854E-05	0.84199	0.0004128	0.94368	0.00046265	490.26447215277705	19.159	0.31586	19.159	18.978	19.294	0	-0.020533	0.00053485	NaN	5.2307	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41060			13987	11157	7850	7850							0.023328834091330464
IARFEEITI	9	Unmodified	_IARFEEITI_					0	0	0			REV__ENSG00000139151|ENST00000266505|PLCZ1	REV__ENSG00000139151|ENST00000266505|PLCZ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.29248046875	2	546.308406	1090.60226	0.7718	0.00042164	-0.68676	-0.00037518	0.085042	4.6459E-05	546.3077863893817	60.525	0.46037	60.525	60.359	60.819	0					28	16	2	0	0	0	0.20167	1	14890	14890		29.082	0	1	671490	+		13988	15966	7851	7851	17797	17797					0.06058298648804339
IARKSSHKTQL	11	Unmodified	_IARKSSHKTQL_					0	0	0		ENST00000331203.6_1_2:112945098-112945467:+|nuORF	ENST00000331203.6_1_2:112945098-112945467:+|nuORF	ENST00000331203.6_1_2:112945098-112945467:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.58575439453125	3	423.585966	1267.73607	-0.25955	-0.00010994	-0.1641	-6.9511E-05	-0.42365	-0.00017945	423.5858943373928	18.369	1.2462	18.251	17.985	19.232	-0.11739					85	43	5	0	0	0	0.21521	1	1975	1975		19.144	0.80422	1	1216600			13989	9445	7852	7852	17798	17798					0.11290957474398056
IARKSSHKTQL	11	Unmodified	_IARKSSHKTQL_					0	0	0		ENST00000331203.6_1_2:112945098-112945467:+|nuORF	ENST00000331203.6_1_2:112945098-112945467:+|nuORF	ENST00000331203.6_1_2:112945098-112945467:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.58575439453125	3	423.585966	1267.73607	-0.32795	-0.00013892	-0.092623	-3.9234E-05	-0.42057	-0.00017815	423.585933525925	18.405	1.164	18.347	18.087	19.251	-0.058172					76	40	4	0	0	0	0.28258	1	1974	1974		14.838	1.9653	1	1245000			13990	9445	7852	7852	17799	17799					0.11290957474398056
IARNKGVVL	9	Unmodified	_IARNKGVVL_					0	0	0		ENSG00000183044|ENST00000268251|ABAT;ENST00000566590.5_1_16:8807641-8875284:+|nuORF	ENSG00000183044|ENST00000268251|ABAT	ENSG00000183044|ENST00000268251|ABAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7852478027344	2	485.313826	968.613099	-0.10496	-5.0938E-05	0.051699	2.509E-05	-0.05326	-2.5848E-05	485.31383115155256	13.108	0.27644	13.108	12.977	13.254	0					18	9	3	0	0	0	0.26168	1	292	292		1.8442	0	1	54798			13991	7341	7853	7853	17800	17800					0.12753745813768091
IARNLTQQL	9	Unmodified	_IARNLTQQL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8125	2	528.811648	1055.60874	0.90564	0.00047891	0.2156	0.00011401	1.1212	0.00059293	528.8117377635735	37.3	1.2558	37.3	37.013	38.269	0					117	44	4	0	0	0	0.0008224	2	7645	7645;7687		125.04	35.637	1	9274400			13992	4787	7854	7854	17801;17802	17801					0.08316236600194316
IARNLTQQL	9	Unmodified	_IARNLTQQL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3136596679688	2	528.811648	1055.60874	0.48144	0.00025459	0.8829	0.00046689	1.3643	0.00072148	528.8120822593967	37.166	1.0882	37.254	36.98	38.068	0.08741					114	39	4	0	0	0	0.0008224	2	7640	7640;7736		125.04	25.283	1	8140100			13993	4787	7854	7854	17803;17804	17803					0.08316236600194316
IARNQVRLA	9	Unmodified	_IARNQVRLA_					0	0	0		ENSG00000115339|ENST00000392701|GALNT3;ENST00000603680.5_1_12:51748165-51753149:-|nuORF;ENSG00000139629|ENST00000356317|GALNT6	ENSG00000115339|ENST00000392701|GALNT3	ENSG00000115339|ENST00000392701|GALNT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.820068359375	2	520.819807	1039.62506	0.29383	0.00015303	-0.061007	-3.1774E-05	0.23283	0.00012126	520.8197507821329	26.564	0.40364	26.525	26.316	26.72	-0.038671					27	13	3	0	0	0	0.30623	1	4412	4412		7.9102	2.1783	1	112880			13994	2636	7855	7855	17805	17805					0.10683362556960674
IARNQVRLA	9	Unmodified	_IARNQVRLA_					0	0	0		ENSG00000115339|ENST00000392701|GALNT3;ENST00000603680.5_1_12:51748165-51753149:-|nuORF;ENSG00000139629|ENST00000356317|GALNT6	ENSG00000115339|ENST00000392701|GALNT3	ENSG00000115339|ENST00000392701|GALNT3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	520.819807	1039.62506	0.32351	0.00016849	-0.14668	-7.6392E-05	0.17684	9.21E-05	520.819719584624	26.522	0.38055	26.522	26.321	26.701	0	-0.0059586	0.0001508	NaN	7.9102	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122920			13995	2636	7855	7855							0.10683362556960674
IARNQVRLA	9	Unmodified	_IARNQVRLA_					0	0	0		ENSG00000115339|ENST00000392701|GALNT3;ENST00000603680.5_1_12:51748165-51753149:-|nuORF;ENSG00000139629|ENST00000356317|GALNT6	ENSG00000115339|ENST00000392701|GALNT3	ENSG00000115339|ENST00000392701|GALNT3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	520.819807	1039.62506	0.52853	0.00027527	-0.55476	-0.00028893	-0.026224	-1.3658E-05	520.8194251526323	26.559	0.43003	26.537	26.356	26.786	-0.022236	0.0088442	-0.00027427	NaN	7.9102	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131770			13996	2636	7855	7855							0.10683362556960674
IARVPELSL	9	Unmodified	_IARVPELSL_					0	0	0		ENST00000481928.1_1_2:232573240-232573384:+|nuORF	ENST00000481928.1_1_2:232573240-232573384:+|nuORF	ENST00000481928.1_1_2:232573240-232573384:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.29583740234375	2	499.305667	996.596781	0.95488	0.00047678	-0.47698	-0.00023816	0.4779	0.00023862	499.3058777340947	47.26	0.79678	47.314	46.851	47.648	0.054375					56	28	3	0	0	0	0.155	1	10705	10705		30.225	5.5509	1	1183200			13997	11039	7856	7856	17806	17806					0.09834619856997051
IASEWVGLP	9	Unmodified	_IASEWVGLP_					0	0	0		nc|ENSG00000239474|O60662-2|KLHL41;ENSG00000239474|ENST00000284669|KLHL41	nc|ENSG00000239474|O60662-2|KLHL41	nc|ENSG00000239474|O60662-2|KLHL41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8005065917969	2	486.263468	970.512382	0.22507	0.00010944	0.3518	0.00017107	0.57686	0.00028051	486.26351693549543	59.362	1.1778	59.453	58.56	59.737	0.091305					46	41	2	0	0	0	0.21905	1	14395	14395		16.942	9.6531	1	162950			13998	8513	7857	7857	17807	17807					0.025946690402406603
IASFPEPR	8	Unmodified	_IASFPEPR_					0	0	0			REV__ENST00000429989.7_1_10:82277728-82277848:+|nuORF	REV__ENST00000429989.7_1_10:82277728-82277848:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2792053222656	2	458.747985	915.481417	0.18776	8.6135E-05	-0.01925	-8.8307E-06	0.16851	7.7304E-05	458.7479156234465	29.004	0.85154	29.004	28.67	29.521	0					49	30	2	0	0	0	0.32778	1	5287	5287		20.871	7.3633	1	217240	+		13999	20939	7858	7858	17808	17808					0.02029515725996589
IASKPIIV	8	Unmodified	_IASKPIIV_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.5834045410156	2	420.781296	839.54804	0.037937	1.5963E-05	-0.10194	-4.2896E-05	-0.064007	-2.6933E-05	420.7812048081225	47.024	0.77966	47.076	46.846	47.626	0.05257					56	28	3	0	0	0	0.34198	1	10596	10596		10.824	4.1008	1	1415300			14000	4239	7859	7859	17809	17809					0.12184751287895779
IASLVTAKLV	10	Unmodified	_IASLVTAKLV_					0	0	0		nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1;ENSG00000169641|ENST00000302291|LUZP1	nc|ENSG00000169641|Q86V48-2|LUZP1	nc|ENSG00000169641|Q86V48-2|LUZP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.3087158203125	2	507.831517	1013.64848	0.26124	0.00013267	-1.7303	-0.00087872	-1.4691	-0.00074606	507.83053181672415	52.038	0.48676	52.038	51.809	52.296	0					27	17	2	0	0	0	0.318	1	12140	12140		3.9444	0	1	360280			14001	6373	7860	7860	17810	17810					0.1422036355089631
IASPSQLR	8	Unmodified	_IASPSQLR_					0	0	0			REV__ENST00000596126.1_1_19:21688636-21688747:+|nuORF	REV__ENST00000596126.1_1_19:21688636-21688747:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.26092529296875	2	436.253434	870.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.772	1	45.772	45.272	46.272	0								0	0	0	0.28879	1	10258	10258		30.637	3.7529	1		+		14002	22599	7861	7861	17811	17811					0.05188918100293449
IASQGKVLI	9	Unmodified	_IASQGKVLI_					0	0	0			REV__ENST00000368331.5_1_1:155736459-155737267:-|nuORF	REV__ENST00000368331.5_1_1:155736459-155737267:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2763977050781	2	464.794935	927.575317	-0.010462	-4.8625E-06	-0.24898	-0.00011572	-0.25944	-0.00012058	464.7949187806257	50.007	0.50352	50.007	49.793	50.296	0					26	18	2	0	0	0	0.24289	1	11515	11515		18.146	1.2041	1	269730	+		14003	20335	7862	7862	17812	17812					0.1086323482828675
IASSFEKF	8	Unmodified	_IASSFEKF_					0	0	0			REV__TBC1D8B|p.L930Yfs*38|1|0.07|ENSG00000133138|chrX:106868452-106868452|T/-|frameshift_variant	REV__TBC1D8B|p.L930Yfs*38|1|0.07|ENSG00000133138|chrX:106868452-106868452|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2763977050781	2	464.742368	927.470183	-0.02745	-1.2757E-05	0.064109	2.9794E-05	0.036659	1.7037E-05	464.74235066125016	49.817	0.43323	49.817	49.675	50.108	0					27	15	2	0	0	0	0.34185	1	11515	11515		10.183	0.83596	1	294960	+		14004	15612	7863	7863	17813	17813					0.003546936318684857
IASSSEAEPS	10	Unmodified	_IASSSEAEPS_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7823791503906	2	489.224736	976.43492	0.36603	0.00017907	-0.049237	-2.4088E-05	0.3168	0.00015498	489.2247513083005	33.282	0.46448	33.337	33.063	33.527	0.055309					19	16	2	0	0	0	0.31165	1	6362	6362		10.824	0	1	125280	+		14005	18137	7864	7864	17814	17814					-0.05424013686604212
IASTYELCF	9	Unmodified	_IASTYELCF_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2589111328125	2	523.746793	1045.47903	0.54154	0.00028363	0.55964	0.00029311	1.1012	0.00057674	523.7468831749868	43.519	0.33537	43.596	43.401	43.736	0.077518					17	11	2	0	0	0	0.25417	1	9565	9565		8.5933	8.5933	1	209580	+		14006	13882	7865	7865	17815	17815					-0.04188700793974931
IASVILLMVF	10	Unmodified	_IASVILLMVF_					0	0	0			REV__GRIN2A|p.F847Lfs*30|1|0.22|ENSG00000183454|chr16:9768906-9768907|AA/-|frameshift_variant	REV__GRIN2A|p.F847Lfs*30|1|0.22|ENSG00000183454|chr16:9768906-9768907|AA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.338134765625	2	553.338121	1104.66169	0.38975	0.00021566	0.50546	0.00027969	0.89522	0.00049536	553.3380998887236	88.147	0.81601	88.144	87.852	88.668	-0.0028381					101	40	4	0	0	0	0.37925	1	23296	23296		7.2892	2.0586	1	857970	+		14007	18263	7866	7866	17816	17816					0.11354478338625995
IATETLKVHLV	11	Unmodified	_IATETLKVHLV_					0	0	0			REV__ENSG00000118985|ENST00000237853|ELL2	REV__ENSG00000118985|ENST00000237853|ELL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.265380859375	2	612.371538	1222.72852	0.054703	3.3499E-05	-0.098475	-6.0303E-05	-0.043772	-2.6805E-05	612.3716714785674	51.973	0.35167	51.972	51.764	52.115	-0.00080872					17	12	2	0	0	0	0.33037	1	12179	12179		4.5289	0	1	232120	+		14008	15025	7867	7867	17817	17817					0.12606805154086942
IATILREI	8	Unmodified	_IATILREI_					0	0	0		nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000102572|ENST00000539966|STK24;ENST00000492127.5_1_2:242439390-242441021:-|nuORF;nc|ENSG00000115694|O00506-3|STK25;nc|ENSG00000115694|O00506-2|STK25;ENSG00000115694|ENST00000316586|STK25	nc|ENSG00000102572|Q9Y6E0|STK24;nc|ENSG00000115694|O00506-3|STK25	nc|ENSG00000115694|O00506-3|STK25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.794921875	2	464.794935	927.575317	0.23471	0.00010909	-0.13494	-6.2718E-05	0.099775	4.6375E-05	464.79471756258323	54.12	0.52088	54.12	53.884	54.405	0					40	18	3	0	0	0	0.029379	1	12827	12827		89.401	35.568	1	545170			14009	1771;2671	7868	7868	17818	17818					0.1086323482828675
IATILREI	8	Unmodified	_IATILREI_					0	0	0		nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000102572|ENST00000539966|STK24;ENST00000492127.5_1_2:242439390-242441021:-|nuORF;nc|ENSG00000115694|O00506-3|STK25;nc|ENSG00000115694|O00506-2|STK25;ENSG00000115694|ENST00000316586|STK25	nc|ENSG00000102572|Q9Y6E0|STK24;nc|ENSG00000115694|O00506-3|STK25	nc|ENSG00000115694|O00506-3|STK25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7947998046875	2	464.794935	927.575317	0.12809	5.9535E-05	-0.053678	-2.4949E-05	0.07441	3.4586E-05	464.7948099593962	54.106	0.58125	54.169	53.902	54.483	0.063202					41	21	3	0	0	0	0.1286	1	12843	12843		55.503	9.4818	1	513130			14010	1771;2671	7868	7868	17819	17819					0.1086323482828675
IATILREI	8	Unmodified	_IATILREI_					0	0	0		nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000102572|ENST00000539966|STK24;ENST00000492127.5_1_2:242439390-242441021:-|nuORF;nc|ENSG00000115694|O00506-3|STK25;nc|ENSG00000115694|O00506-2|STK25;ENSG00000115694|ENST00000316586|STK25	nc|ENSG00000102572|Q9Y6E0|STK24;nc|ENSG00000115694|O00506-3|STK25	nc|ENSG00000115694|O00506-3|STK25	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	464.794935	927.575317	0.36332	0.00016887	0.054912	2.5523E-05	0.41824	0.00019439	464.7947507947048	54.259	0.51251	54.243	53.978	54.49	-0.015919	0.065823	9.2183E-05	NaN	89.401	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	674570			14011	1771;2671	7868	7868							0.1086323482828675
IATQVVVEK	9	Unmodified	_IATQVVVEK_					0	0	0		nc|ENSG00000204394|P26640-2|VARS1;ENSG00000204394|ENST00000375663|VARS1	nc|ENSG00000204394|P26640-2|VARS1	nc|ENSG00000204394|P26640-2|VARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7980651855469	2	493.797675	985.580796	0.44174	0.00021813	-0.31125	-0.0001537	0.13049	6.4437E-05	493.7974266725493	30.546	0.34136	30.546	30.333	30.674	0					18	11	2	0	0	0	0.16685	1	5608	5608		28.495	9.1326	1	122100			14012	8223	7869	7869	17820	17820					0.08742913620096715
IATQVVVEK	9	Unmodified	_IATQVVVEK_					0	0	0		nc|ENSG00000204394|P26640-2|VARS1;ENSG00000204394|ENST00000375663|VARS1	nc|ENSG00000204394|P26640-2|VARS1	nc|ENSG00000204394|P26640-2|VARS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	493.797675	985.580796	0.457	0.00022567	-0.4989	-0.00024635	-0.041896	-2.0688E-05	493.7973564680039	30.513	0.33955	30.541	30.354	30.693	0.027946	-0.008444	-0.00014473	NaN	28.495	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130400			14013	8223	7869	7869							0.08742913620096715
IATQVVVEK	9	Unmodified	_IATQVVVEK_					0	0	0		nc|ENSG00000204394|P26640-2|VARS1;ENSG00000204394|ENST00000375663|VARS1	nc|ENSG00000204394|P26640-2|VARS1	nc|ENSG00000204394|P26640-2|VARS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.797675	985.580796	0.098795	4.8785E-05	-0.25974	-0.00012826	-0.16094	-7.9473E-05	493.79753827681736	30.533	0.33439	30.561	30.335	30.669	0.027157	0.01138	9.1467E-05	NaN	28.495	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97775			14014	8223	7869	7869							0.08742913620096715
IATVAVLAAL	10	Unmodified	_IATVAVLAAL_					0	0	0			REV__nc|ENSG00000163681|Q14BN4-4|SLMAP	REV__nc|ENSG00000163681|Q14BN4-4|SLMAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2868347167969	2	471.305136	940.595718	0.59916	0.00028239	-0.058825	-2.7725E-05	0.54034	0.00025466	471.30498118679003	50.727	0.63	50.773	50.434	51.064	0.045998					37	22	2	0	0	0	0.30079	1	11698	11698		20.454	1.1966	1	337960	+		14015	23058	7870	7870	17821	17821					0.12304405488077919
IAVNALWPKT	10	Unmodified	_IAVNALWPKT_					0	0	0		ENSG00000119471|ENST00000398805|HSDL2;nc|ENSG00000119471|Q6YN16-2|HSDL2;ENST00000480881.1_1_9:115179142-115201087:+|nuORF	ENSG00000119471|ENST00000398805|HSDL2	ENSG00000119471|ENST00000398805|HSDL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2935791015625	2	556.826766	1111.63898	0.045937	2.5579E-05	0.48933	0.00027247	0.53527	0.00029805	556.827235656617	25.801	0.37103	25.779	25.552	25.923	-0.022238					18	12	2	0	0	0	0.31745	1	4138	4138		8.7454	1.1365	1	94661			14016	2881	7871	7871	17822	17822					0.08762595265375239
IAVNAVLTV	9	Unmodified	_IAVNAVLTV_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2815246582031	2	450.28166	898.548768	0.17844	8.0347E-05	-0.23855	-0.00010741	-0.060111	-2.7067E-05	450.2814774878671	67.317	0.57498	67.317	67.048	67.623	0					33	19	2	0	0	0	0.015402	1	16913	16913		71.134	18.865	1	319200			14017	4923	7872	7872	17823	17823					0.09543545936946884
IAVNAVLTV	9	Unmodified	_IAVNAVLTV_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2813720703125	2	450.28166	898.548768	0.13602	6.1248E-05	-0.21603	-9.7274E-05	-0.080008	-3.6026E-05	450.281484640432	67.271	0.55979	67.349	67.068	67.628	0.078041					26	19	2	0	0	0	0.006189	1	16880	16880		85.272	14.138	1	288600			14018	4923	7872	7872	17824	17824					0.09543545936946884
IAVNAVLTV	9	Unmodified	_IAVNAVLTV_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	450.28166	898.548768	0.067512	3.0399E-05	-0.60733	-0.00027347	-0.53982	-0.00024307	450.2814449633024	67.336	0.39102	67.319	67.115	67.506	-0.016296	-0.0090285	-0.00030785	NaN	85.272	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139780			14019	4923	7872	7872							0.09543545936946884
IAVPTTSVPIS	11	Unmodified	_IAVPTTSVPIS_					0	0	0			REV__nc|ENSG00000169876|Q685J3-2|MUC17	REV__nc|ENSG00000169876|Q685J3-2|MUC17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2796020507812	2	542.816064	1083.61758	0.79973	0.00043411	-0.2942	-0.0001597	0.50553	0.00027441	542.8158734207842	54.455	0.59752	54.439	54.224	54.821	-0.015923					53	20	4	0	0	0	0.32667	1	12885	12885		8.7454	2.0222	1	1084200	+		14020	17546	7873	7873	17825	17825					0.07911165445989354
IAYILQGV	8	Unmodified	_IAYILQGV_					0	0	0		nc|ENSG00000266173|Q7RTN6-5|STRADA;nc|ENSG00000266173|Q7RTN6-3|STRADA;ENSG00000266173|ENST00000336174|STRADA;ENST00000581505.6_2_17:61784845-61790870:-|nuORF;nc|ENSG00000266173|Q7RTN6-4|STRADA;nc|ENSG00000266173|Q7RTN6-6|STRADA;nc|ENSG00000266173|Q7RTN6-2|STRADA;STRADA|p.R333Gfs*42|1|0.36|ENSG00000266173|chr17:63704444-63704444|G/-|frameshift_variant	nc|ENSG00000266173|Q7RTN6-5|STRADA	nc|ENSG00000266173|Q7RTN6-5|STRADA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.7630310058594	2	438.763104	875.511654	0.11265	4.9426E-05	-0.012531	-5.4983E-06	0.10012	4.3928E-05	438.7629579529789	68.562	0.56577	68.562	68.275	68.841	0					36	20	2	0	0	0	0.022392	2	17259	17259;17306		98.807	27.475	1	492730			14021	8677	7874	7874	17826;17827	17826					0.06891874391192232
IAYILQGV	8	Unmodified	_IAYILQGV_					0	0	0		nc|ENSG00000266173|Q7RTN6-5|STRADA;nc|ENSG00000266173|Q7RTN6-3|STRADA;ENSG00000266173|ENST00000336174|STRADA;ENST00000581505.6_2_17:61784845-61790870:-|nuORF;nc|ENSG00000266173|Q7RTN6-4|STRADA;nc|ENSG00000266173|Q7RTN6-6|STRADA;nc|ENSG00000266173|Q7RTN6-2|STRADA;STRADA|p.R333Gfs*42|1|0.36|ENSG00000266173|chr17:63704444-63704444|G/-|frameshift_variant	nc|ENSG00000266173|Q7RTN6-5|STRADA	nc|ENSG00000266173|Q7RTN6-5|STRADA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.7631530761719	2	438.763104	875.511654	-0.0027881	-1.2233E-06	-0.075839	-3.3275E-05	-0.078627	-3.4499E-05	438.76302176856973	68.479	0.58356	68.55	68.271	68.854	0.071938					40	21	3	0	0	0	0.012657	2	17224	17224;17273		112.56	41.694	1	613310			14022	8677	7874	7874	17828;17829	17828					0.06891874391192232
IAYILQGV	8	Unmodified	_IAYILQGV_					0	0	0		nc|ENSG00000266173|Q7RTN6-5|STRADA;nc|ENSG00000266173|Q7RTN6-3|STRADA;ENSG00000266173|ENST00000336174|STRADA;ENST00000581505.6_2_17:61784845-61790870:-|nuORF;nc|ENSG00000266173|Q7RTN6-4|STRADA;nc|ENSG00000266173|Q7RTN6-6|STRADA;nc|ENSG00000266173|Q7RTN6-2|STRADA;STRADA|p.R333Gfs*42|1|0.36|ENSG00000266173|chr17:63704444-63704444|G/-|frameshift_variant	nc|ENSG00000266173|Q7RTN6-5|STRADA	nc|ENSG00000266173|Q7RTN6-5|STRADA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.76312255859375	2	438.763104	875.511654	0.14426	6.3296E-05	-0.27849	-0.00012219	-0.13423	-5.8895E-05	438.76289890369617	68.595	0.59049	68.576	68.252	68.843	-0.019157					37	20	2	0	0	0	0.022392	1	17249	17249		98.807	27.943	1	538940			14023	8677	7874	7874	17830	17830					0.06891874391192232
IAYKFGKTV	9	Unmodified	_IAYKFGKTV_					0	0	0		ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.8030395507812	2	513.80276	1025.59097	0.5712	0.00029348	0.0938	4.8195E-05	0.665	0.00034168	513.8027771886972	33.744	1.1623	33.744	33.426	34.588	0					118	41	4	0	0	0	0.00051734	5	6586	6540;6586;6631;6693;6743		128.93	59.828	1	4002900			14024	3736	7875	7875	17831;17832;17833;17834;17835	17832					0.0791952134532039
IAYKFGKTV	9	Unmodified	_IAYKFGKTV_					0	0	0		ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8031005859375	2	513.80276	1025.59097	0.62485	0.00032105	0.031231	1.6047E-05	0.65608	0.0003371	513.8027638074036	33.554	1.2953	33.621	33.353	34.648	0.06636					122	46	4	0	0	0	0.00051734	3	6544	6498;6544;6598		128.93	66.36	1	4387100			14025	3736	7875	7875	17836;17837;17838	17837					0.0791952134532039
IAYKFGKTV	9	Unmodified	_IAYKFGKTV_					0	0	0		ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	ENSG00000133872|ENST00000256255|SARAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8031005859375	2	513.80276	1025.59097	0.03981	2.0455E-05	0.61126	0.00031407	0.65107	0.00033452	513.8030587746803	33.56	1.579	33.627	33.358	34.937	0.066704					135	56	4	0	0	0	0.00051734	4	6542	6493;6542;6584;6665		128.93	66.36	1	3999200			14026	3736	7875	7875	17839;17840;17841;17842	17840					0.0791952134532039
IAYLVRQL	8	Unmodified	_IAYLVRQL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.25042724609375	2	488.302927	974.591301	0.3351	0.00016363	-0.4678	-0.00022843	-0.1327	-6.48E-05	488.3029777015071	51.614	0.56259	51.614	51.406	51.969	0					30	20	2	0	0	0	0.25627	1	12051	12051		46.921	0	1	409090			14027	5669	7876	7876	17843	17843					0.10298941065184408
IAYPPEEFTVL	11	Unmodified	_IAYPPEEFTVL_					0	0	0			REV__nc|ENSG00000102786|Q9UL03-2|INTS6	REV__nc|ENSG00000102786|Q9UL03-2|INTS6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.9417419433594	3	426.892062	1277.65436	-0.082326	-3.5144E-05	-0.068346	-2.9176E-05	-0.15067	-6.432E-05	427.226324026739	38.193	0.42112	38.193	37.956	38.377	0					19	14	2	0	0	0	0.33277	1	7877	7877		3.0723	0	1	82464	+		14028	14333	7877	7877	17844	17844					0.026634172719013804
IAYTFARAFLM	11	Unmodified	_IAYTFARAFLM_					0	0	0		nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5692045-5696439:-|nuORF;ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1	nc|ENSG00000196365|P36776-2|LONP1	nc|ENSG00000196365|P36776-2|LONP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7803955078125	3	435.233765	1302.67946	-0.24979	-0.00010872	0.68898	0.00029987	0.43919	0.00019115	435.23429408750275	29.523	0.55018	29.536	29.274	29.824	0.013474					44	18	3	0	0	0	0.3325	1	5249	5249		4.1166	4.1166	1	265790			14029	7853	7878	7878	17845	17845					0.04023193593479846
ICCFLMQL	8	Unmodified	_ICCFLMQL_					0	0	0			REV__ENST00000502346.1_1_5:82352613-82352685:-|nuORF	REV__ENST00000502346.1_1_5:82352613-82352685:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.73150634765625	2	485.731577	969.448602	0.34375	0.00016697	-0.26649	-0.00012944	0.077255	3.7525E-05	485.731325039557	79.407	1.439	79.407	78.828	80.267	0					121	56	4	0	0	0	0.38703	1	20600	20600		20.871	1.4322	1	1197100	+		14030	21715	7879	7879	17846	17846					-0.037344739843661046
ICCWSPYFL	9	Unmodified	_ICCWSPYFL_					0	0	0		nc|ENSG00000187258|Q6W5P4-2|NPSR1;nc|ENSG00000187258|Q6W5P4-5|NPSR1;ENSG00000187258|ENST00000360581|NPSR1;nc|ENSG00000187258|Q6W5P4-4|NPSR1;nc|ENSG00000187258|Q6W5P4-3|NPSR1	nc|ENSG00000187258|Q6W5P4-2|NPSR1	nc|ENSG00000187258|Q6W5P4-2|NPSR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.254150390625	2	566.253731	1130.49291	0.36257	0.00020531	0.42139	0.00023861	0.78396	0.00044392	566.2538430067982	45.211	0.56072	45.286	45.072	45.633	0.07505					52	20	4	0	0	0	0.28128	1	10076	10076		11.64	0.81637	1	703950			14031	7675	7880	7880	17847	17847					-0.06711746566543297
ICDALLISQN	10	Unmodified	_ICDALLISQN_					0	0	0		ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3171997070312	2	545.284074	1088.5536	0.85893	0.00046836	2.2637	0.0012344	3.1226	0.0017027	545.2843347237585	77.662	1.1397	77.662	77.394	78.533	0					96	42	3	0	0	0	0.25821	1	20030	20030		34.932	20.094	1	251450			14032	6109	7881	7881	17848	17848					0.012860620174024007
ICDALLISQN	10	Unmodified	_ICDALLISQN_					0	0	0		ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.317138671875	2	545.284074	1088.5536	0.95917	0.00052302	0.81777	0.00044592	1.7769	0.00096893	545.2844857235744	77.731	0.70869	77.786	77.346	78.055	0.05542					42	25	2	0	0	0	0.25821	1	20001	20001		34.932	13.395	1	216830			14033	6109	7881	7881	17849	17849					0.012860620174024007
ICDALLISQN	10	Unmodified	_ICDALLISQN_					0	0	0		ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3170776367188	2	545.284074	1088.5536	1.0956	0.00059744	0.61746	0.00033669	1.7131	0.00093413	545.28421661547	77.736	0.87516	77.705	77.346	78.221	-0.031334					51	31	2	0	0	0	0.25821	1	20055	20055		28.495	12.345	1	211300			14034	6109	7881	7881	17850	17850					0.012860620174024007
ICFYINITK	9	Unmodified	_ICFYINITK_					0	0	0		ENST00000498426.5_1_1:196286396-196434478:-|nuORF;KCNT2|p.E559Ffs*10|1|0.02|ENSG00000162687|chr1:196340449-196340450|-/GATACATTATGAA|frameshift_variant;nc|ENSG00000162687|Q6UVM3-4|KCNT2;ENST00000610076.1_1_1:196227273-196577439:-|nuORF;nc|ENSG00000162687|Q6UVM3-3|KCNT2;nc|ENSG00000162687|Q6UVM3-2|KCNT2;ENSG00000162687|ENST00000294725|KCNT2	ENST00000498426.5_1_1:196286396-196434478:-|nuORF	ENST00000498426.5_1_1:196286396-196434478:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.80126953125	2	557.801903	1113.58925	0.1392	7.7648E-05	-0.7055	-0.00039353	-0.5663	-0.00031588	557.8014277201935	17.949	0.407	17.831	17.631	18.038	-0.11739					19	13	2	0	0	0	0.34681	1	1799	1799		1.8442	0	1	52393			14035	5599	7882	7882	17851	17851					0.037001442650534955
ICIILLIKN	9	Unmodified	_ICIILLIKN_					0	0	0			REV__ENST00000428210.5_1_2:61719906-61720176:-|nuORF	REV__ENST00000428210.5_1_2:61719906-61720176:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.3085327148438	2	521.838288	1041.66202	0.46188	0.00024103	0.17034	8.8888E-05	0.63222	0.00032992	521.8384347287308	58.668	0.36653	58.76	58.586	58.953	0.091305					19	12	2	0	0	0	0.25066	1	14230	14230		11.64	11.64	1	270330	+		14036	20918	7883	7883	17852	17852					0.14285898058483326
ICILVITLLLD	11	Unmodified	_ICILVITLLLD_					0	0	0		ENSG00000166509|ENST00000299642|CLEC3A	ENSG00000166509|ENST00000299642|CLEC3A	ENSG00000166509|ENST00000299642|CLEC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2576599121094	3	410.257687	1227.75123	0.21019	8.6232E-05	-0.51039	-0.00020939	-0.3002	-0.00012316	410.2574381122317	84	0.76422	84	83.373	84.137	0					73	29	3	0	0	0	0.48212	1	22013	22013		0.45452	0.45452	1	408480			14037	6089	7884	7884	17853	17853					0.14646688227367122
ICILVITLLLD	11	Unmodified	_ICILVITLLLD_					0	0	0		ENSG00000166509|ENST00000299642|CLEC3A	ENSG00000166509|ENST00000299642|CLEC3A	ENSG00000166509|ENST00000299642|CLEC3A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	410.257687	1227.75123	0.33212	0.00013626	-0.53316	-0.00021873	-0.20104	-8.2477E-05	410.25743164641096	84.037	2.7712	84.114	83.274	86.045	0.077095	0.057282	-3.6958E-06	NaN	0.45452	190	108	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461160			14038	6089	7884	7884							0.14646688227367122
ICMIKQCN	8	Unmodified	_ICMIKQCN_					0	0	0			REV__nc|ENSG00000156500|Q6P4D5|PABIR3	REV__nc|ENSG00000156500|Q6P4D5|PABIR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.72454833984375	2	476.724284	951.434014	-0.053903	-2.5697E-05	0.82109	0.00039143	0.76719	0.00036574	476.72475528995545	30.12	0.4707	30.147	29.864	30.335	0.027157					22	15	2	0	0	0	0.45169	1	5481	5481		5.2307	0	1	158620	+		14039	23039	7885	7885	17854	17854					-0.043645461325127144
ICPWINTYPLP	11	Unmodified	_ICPWINTYPLP_					0	0	0		ENST00000509581.5_1_5:276369-276570:+|nuORF	ENST00000509581.5_1_5:276369-276570:+|nuORF	ENST00000509581.5_1_5:276369-276570:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.90057373046875	3	439.56177	1315.66348	-0.256	-0.00011253	0.62624	0.00027527	0.37024	0.00016274	439.56205531985574	13.133	0.51994	13.034	12.869	13.389	-0.099291					42	17	4	0	0	0	0.33303	1	375	375		2.4348	1.2414	1	132320			14040	11360	7886	7886	17855	17855					0.018274873566042515
ICRPMLAYRH	10	Unmodified	_ICRPMLAYRH_					0	0	0		ENSG00000126895|ENST00000646375|AVPR2;nc|ENSG00000126895|P30518-2|AVPR2	ENSG00000126895|ENST00000646375|AVPR2	ENSG00000126895|ENST00000646375|AVPR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8602294921875	2	630.328627	1258.6427	0.60648	0.00038228	2.276	0.0014346	2.8824	0.0018169	630.330021983086	84.156	0.34792	84.156	84.057	84.405	0					19	13	2	0	0	0	0.31847	1	22080	22080		6.7232	0.99131	1	180160			14041	3300	7887	7887	17856	17856					0.02372618495928691
ICRPMLAYRH	10	Unmodified	_ICRPMLAYRH_					0	0	0		ENSG00000126895|ENST00000646375|AVPR2;nc|ENSG00000126895|P30518-2|AVPR2	ENSG00000126895|ENST00000646375|AVPR2	ENSG00000126895|ENST00000646375|AVPR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	630.328627	1258.6427	0.39848	0.00025117	1.938	0.0012216	2.3365	0.0014727	630.3299148185362	83.736	0.43752	83.813	83.488	83.925	0.077095	-0.14175	2.3746E-05	NaN	6.7232	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155750			14042	3300	7887	7887							0.02372618495928691
ICVKKLLPF	9	Unmodified	_ICVKKLLPF_					0	0	0			REV__ENST00000397276.6_1_14:23794476-23794560:+|nuORF	REV__ENST00000397276.6_1_14:23794476-23794560:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2963256835938	2	530.833006	1059.65146	0.87854	0.00046636	-1.0459	-0.0005552	-0.16736	-8.8842E-05	530.8325052380859	60.788	0.29263	60.779	60.596	60.888	-0.0094566					13	10	2	0	0	0	0.24542	1	14852	14852		14.582	1.0738	1	114080	+		14043	20669	7888	7888	17857	17857					0.12401915404052488
ICVLRVWL	8	Unmodified	_ICVLRVWL_					0	0	0			REV__ENST00000508855.5_1_5:86705134-86707048:-|nuORF	REV__ENST00000508855.5_1_5:86705134-86707048:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2906799316406	2	501.301873	1000.58919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.527	1	79.588	79.088	80.088	0.061417								0	0	0	0.35985	1	20616	20616		10.183	0.10947	1		+		14044	21779	7889	7889	17858	17858					0.08892189055723065
ICYSRIVL	8	Unmodified	_ICYSRIVL_					0	0	0		nc|ENSG00000293505|Q96P88|GNRHR2	nc|ENSG00000293505|Q96P88|GNRHR2	nc|ENSG00000293505|Q96P88|GNRHR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7849426269531	2	483.775688	965.536823	0.18822	9.1057E-05	-1.6256	-0.00078641	-1.4373	-0.00069535	483.775241090247	69.112	0.27871	69.112	68.951	69.229	0					15	9	2	0	0	0	0.43043	1	17473	17473		12.532	0	1	87457			14045	13021	7890	7890	17859	17859					0.05267605922108487
IDAARGHH	8	Unmodified	_IDAARGHH_					0	0	0		nc|ENSG00000165794|Q9NP94-2|SLC39A2;ENSG00000165794|ENST00000298681|SLC39A2	nc|ENSG00000165794|Q9NP94-2|SLC39A2	nc|ENSG00000165794|Q9NP94-2|SLC39A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.723388671875	2	438.725375	875.436198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.092	1	71.153	70.653	71.653	0.060783								0	0	0	0.36169	1	18047	18047		9.3474	1.4373	1				14046	6000	7891	7891	17860	17860					-0.0065029001652874285
IDAFRQVEHI	10	Unmodified	_IDAFRQVEHI_					0	0	0			REV__ENSG00000197446|ENST00000331105|CYP2F1	REV__ENSG00000197446|ENST00000331105|CYP2F1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2323913574219	3	409.887533	1226.64077	-0.17798	-7.2954E-05	0.5727	0.00023474	0.39472	0.00016179	409.8874993833867	26.453	0.28674	26.453	26.242	26.528	0					12	9	2	0	0	0	0.31651	1	4370	4370		11.518	3.9089	1	51324	+		14047	18738	7892	7892	17861	17861					0.036516042833454776
IDAYKIRIR	9	Unmodified	_IDAYKIRIR_					0	0	0		chr1:155904801-155910450|161|12.85|0.22|5.85|-|2|None,RIT1|1	chr1:155904801-155910450|161|12.85|0.22|5.85|-|2|None,RIT1|1	chr1:155904801-155910450|161|12.85|0.22|5.85|-|2|None,RIT1|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.3509521484375	2	574.35094	1146.68733	0.20169	0.00011584	-0.075425	-4.332E-05	0.12626	7.2518E-05	574.3508452750808	42.393	1.0282	42.484	42.067	43.095	0.091362					104	36	4	0	0	0	0.0059482	1	9232	9232		85.642	2.2128	1	7055700			14048	110	7893	7893	17862	17862					0.11985088905248631
IDCLFHPII	9	Unmodified	_IDCLFHPII_					0	0	0			REV__ENSG00000175398|ENST00000309675|OR10P1	REV__ENSG00000175398|ENST00000309675|OR10P1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2595825195312	2	535.788795	1069.56304	0.34712	0.00018598	-2.5163	-0.0013482	-2.1692	-0.0011622	535.7873185601376	45.67	0.67488	45.73	45.475	46.15	0.059834					28	23	2	0	0	0	0.24311	1	10313	10313		16.942	4.7016	1	212640	+		14049	17888	7894	7894	17863	17863					0.031038750935977077
IDCLFHPII	9	Unmodified	_IDCLFHPII_					0	0	0			REV__ENSG00000175398|ENST00000309675|OR10P1	REV__ENSG00000175398|ENST00000309675|OR10P1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	535.788795	1069.56304	0.64579	0.00034601	-3.0967	-0.0016592	-2.4509	-0.0013131	535.7870030944831	45.731	0.41118	45.796	45.461	45.872	0.065048	0.033023	-0.00026173	NaN	11.64	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258830	+		14050	17888	7894	7894							0.031038750935977077
IDDDDDDSSL	10	Unmodified	_IDDDDDDSSL_					0	0	0			REV__ENSG00000102241|ENST00000218364|HTATSF1	REV__ENSG00000102241|ENST00000218364|HTATSF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3214111328125	2	555.20948	1108.40441	0.48378	0.0002686	0.2361	0.00013108	0.71988	0.00039968	555.2095227517061	64.637	0.58968	64.637	64.398	64.988	0					31	21	2	0	0	0	0.31039	1	16038	16038		18.146	0	1	128320	+		14051	14313	7895	7895	17864	17864					-0.1454583686231672
IDDGFRRLF	9	Unmodified	_IDDGFRRLF_					0	0	0		ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF;nc|ENSG00000162909|P17655-2|CAPN2;ENSG00000162909|ENST00000295006|CAPN2	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	ENST00000474026.5_1_1:223946905-223957668:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.803955078125	2	569.803823	1137.59309	0.48285	0.00027513	-0.38786	-0.00022101	0.094986	5.4123E-05	569.803565019489	36.621	1.2856	36.709	36.238	37.524	0.087406					114	46	4	0	0	0	0.10197	1	7427	7427		37.974	1.847	1	1748100			14052	5628	7896	7896	17865	17865					0.029799500831359182
IDEDEPLFLSL	11	Unmodified	_IDEDEPLFLSL_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.88665771484375	3	430.886976	1289.6391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.036	1	15.036	14.536	15.536	0								0	0	0	0.28946	1	906	906		12.856	0	1				14053	595	7897	7897	17866	17866					0.005865056840548277
IDEGFEYF	8	Unmodified	_IDEGFEYF_					0	0	0			REV__ENSG00000134440|ENST00000256854|NARS1	REV__ENSG00000134440|ENST00000256854|NARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8038635253906	2	510.221465	1018.42838	0.30591	0.00015608	0.051839	2.6449E-05	0.35775	0.00018253	510.2214059510367	75.049	0.43326	75.101	74.89	75.323	0.052361					26	15	2	0	0	0	0.34218	1	19248	19248		9.3474	1.4373	1	248320	+		14054	15674	7898	7898	17867	17867					-0.08009906847325965
IDELPINMGVL	11	Unmodified	_IDELPINMGVL_					0	0	0			REV__ENST00000456360.5_1_Y:23556925-23559248:-|nuORF	REV__ENST00000456360.5_1_Y:23556925-23559248:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.3295288085938	2	607.328482	1212.64241	0.63226	0.00038399	0.83214	0.00050538	1.4644	0.00088937	607.3290795558975	44.4	0.54039	44.468	44.199	44.739	0.068569					51	19	3	0	0	0	0.38753	1	9849	9849		12.873	5.5834	1	616980	+		14055	21172	7899	7899	17868	17868					0.044594772570917485
IDERTVSPF	9	Unmodified	_IDERTVSPF_					0	0	0		ENSG00000119411|ENST00000374183|BSPRY	ENSG00000119411|ENST00000374183|BSPRY	ENSG00000119411|ENST00000374183|BSPRY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8104248046875	2	532.274564	1062.53457	0.44031	0.00023436	-3.8714	-0.0020606	-3.4311	-0.0018263	532.2738077355409	73.533	0.26807	73.503	73.399	73.667	-0.029305					15	9	2	0	0	0	0.24289	1	18793	18793		18.146	3.5647	1	67171			14056	2877	7900	7900	17869	17869					0.00580848718004745
IDFRIGYLK	9	Unmodified	_IDFRIGYLK_					0	0	0			REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8265380859375	2	562.826766	1123.63898	0.42928	0.00024161	-0.54916	-0.00030908	-0.11988	-6.7472E-05	562.826480245939	53.5	0.68779	53.5	53.259	53.946	0					41	25	2	0	0	0	0.10059	1	12654	12654		38.176	9.6811	1	685680	+		14057	14145	7901	7901	17870	17870					0.08210595265359188
IDFRIGYLK	9	Unmodified	_IDFRIGYLK_					0	0	0			REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8267822265625	2	562.826766	1123.63898	0.32262	0.00018158	-0.27052	-0.00015225	0.052102	2.9324E-05	562.8266080285276	53.456	0.54465	53.512	53.3	53.845	0.056255					37	20	2	0	0	0	0.15763	1	12609	12609		29.841	7.1825	1	587150	+		14058	14145	7901	7901	17871	17871					0.08210595265359188
IDFRIGYLK	9	Unmodified	_IDFRIGYLK_					0	0	0			REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8265991210938	2	562.826766	1123.63898	0.32262	0.00018158	-0.27052	-0.00015225	0.052102	2.9324E-05	562.8266080285276	53.456	0.54465	53.512	53.3	53.845	0.056255					37	20	2	0	0	0	0.2422	1	12658	12658		19.362	3.5148	1	587150	+		14059	14145	7901	7901	17872	17872					0.08210595265359188
IDFRIGYLK	9	Unmodified	_IDFRIGYLK_					0	0	0			REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	562.826766	1123.63898	0.42928	0.00024161	-0.54916	-0.00030908	-0.11988	-6.7472E-05	562.826480245939	53.5	0.68779	53.5	53.259	53.946	0	-0.070283	-0.00029959	NaN	38.176	41	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	685680	+		14060	14145	7901	7901							0.08210595265359188
IDFRIGYLK	9	Unmodified	_IDFRIGYLK_					0	0	0			REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	REV__ENST00000487342.1_1_22:21377642-21380401:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	562.826766	1123.63898	0.36327	0.00020446	-0.00049067	-2.7616E-07	0.36278	0.00020418	562.8267550540011	53.708	0.60768	53.699	53.456	54.064	-0.0096054	0.12832	0.00031802	NaN	38.176	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	566950	+		14061	14145	7901	7901							0.08210595265359188
IDGILIKTF	9	Unmodified	_IDGILIKTF_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75;WDR75|p.K411Mfs*20|1|0.05|ENSG00000115368|chr2:189465196-189465197|-/TGATAATTAACTACATCCAAGACAACTTCTGT|frameshift_variant;ENST00000475596.1_1_2:190306218-190316629:+|nuORF;ENST00000472286.5_1_2:190306218-190320233:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8038635253906	2	510.310418	1018.60628	0.21323	0.00010881	-4.3188	-0.002204	-4.1056	-0.0020951	510.3093359584241	73.623	0.67195	73.592	73.124	73.796	-0.030655					70	24	5	0	0	0	0.22674	1	18859	18859		22.736	2.2827	1	451620			14062	2640	7902	7902	17873	17873					0.09772388142528143
IDGLKIHPF	9	Unmodified	_IDGLKIHPF_					0	0	0			REV__nc|ENSG00000100150|O75140-2|DEPDC5	REV__nc|ENSG00000100150|O75140-2|DEPDC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.821044921875	2	520.300384	1038.58622	0.4408	0.00022935	-0.082304	-4.2823E-05	0.35849	0.00018652	520.3005388988444	68.859	0.53911	68.931	68.59	69.129	0.071938					27	19	2	0	0	0	0.25323	1	17403	17403		10.074	2.1638	1	106860	+		14063	14165	7903	7903	17874	17874					0.06846637202556849
IDHLLQRTC	9	Unmodified	_IDHLLQRTC_					0	0	0		ENST00000520196.5_1_8:17581327-17581649:-|nuORF	ENST00000520196.5_1_8:17581327-17581649:-|nuORF	ENST00000520196.5_1_8:17581327-17581649:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3228759765625	2	549.789858	1097.56516	0.13773	7.5722E-05	-2.3601	-0.0012976	-2.2224	-0.0012218	549.7885451580487	35.357	0.29909	35.433	35.21	35.509	0.075306					15	10	2	0	0	0	0.2322	1	7029	7029		20.454	8.8133	1	156370			14064	11469	7904	7904	17875	17875					0.02028303831411904
IDIFCVYFV	9	Unmodified	_IDIFCVYFV_					0	0	0		ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7828979492188	2	559.783179	1117.5518	0.20279	0.00011352	-0.6513	-0.00036459	-0.44851	-0.00025107	559.7825672310918	69.832	0.78754	69.832	69.59	70.378	0					65	28	4	0	0	0	0.25526	1	17711	17711		7.9102	0	1	856040			14065	5612	7905	7905	17876	17876					-0.002269470005558105
IDIKEKLTL	9	Unmodified	_IDIKEKLTL_					0	0	0			REV__nc|ENSG00000234616|O75564|JRK	REV__nc|ENSG00000234616|O75564|JRK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2679443359375	2	536.834257	1071.65396	0.56441	0.00030299	0.69645	0.00037388	1.2609	0.00067687	536.8347416978825	51.539	0.45732	51.539	51.327	51.784	0					26	16	2	0	0	0	0.20167	1	12027	12027		22.736	6.5872	1	329650	+		14066	19144	7906	7906	17877	17877					0.12100042342694906
IDKFTHHLWFF	11	Unmodified	_IDKFTHHLWFF_					0	0	0		ENST00000371477.3_1_6:44414444-44414573:+|nuORF	ENST00000371477.3_1_6:44414444-44414573:+|nuORF	ENST00000371477.3_1_6:44414444-44414573:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2471008300781	3	497.590828	1489.75066	0.45077	0.0002243	-2.8474	-0.0014168	-2.3966	-0.0011925	497.5890480924011	58.719	0.3933	58.811	58.56	58.953	0.091301					20	13	2	0	0	0	0.3325	1	14191	14191		2.2527	0	1	230660			14067	9822	7907	7907	17878	17878					0.025370296224991762
IDKIKDKN	8	Unmodified	_IDKIKDKN_					0	0	0		nc|ENSG00000178852|Q8IY85-2|EFCAB13;ENSG00000178852|ENST00000331493|EFCAB13;ENST00000520776.5_1_17:45405719-45473360:+|nuORF	nc|ENSG00000178852|Q8IY85-2|EFCAB13	nc|ENSG00000178852|Q8IY85-2|EFCAB13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7646179199219	2	487.287474	972.560395	0.146	7.1146E-05	0.23566	0.00011483	0.38166	0.00018598	487.2875506732767	18.021	0.40682	17.962	17.651	18.058	-0.058689					20	14	2	0	0	0	0.34408	1	1823	1823		2.3027	0	1	37948			14068	7079	7908	7908	17879	17879					0.0730174296027144
IDKMMRGK	8	Unmodified	_IDKMMRGK_					0	0	0			REV__ENSG00000197106|ENST00000331565|SLC6A17	REV__ENSG00000197106|ENST00000331565|SLC6A17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.75390625	2	489.764797	977.515042	0.10162	4.9769E-05	-1.4545	-0.00071235	-1.3529	-0.00066258	489.76390940279833	22.773	0.13364	22.686	22.628	22.762	-0.087608					8	4	2	0	0	0	0.42758	1	3257	3257		13.508	4.9146	1	23807	+		14069	18709	7909	7909	17880	17880					0.02538477901907754
IDKPQARPSKK	11	Unmodified	_IDKPQARPSKK_					0	0	0		L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|38|2|sense	L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|38|2|sense	L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|38|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3773193359375	2	634.377686	1266.74082	-0.065239	-4.1386E-05	-0.10892	-6.9098E-05	-0.17416	-0.00011048	634.3778659788805	103.61	1.2562	103.61	103.51	104.77	0					365	174	4	0	0	0	0.42346	2	27654	27589;27654		8.1555	0	1	44719000			14070	12460	7910	7910	17881;17882	17882					0.11811841617122809
IDKPQARPSKK	11	Unmodified	_IDKPQARPSKK_					0	0	0		L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|38|2|sense	L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|38|2|sense	L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|38|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3775024414062	2	634.377686	1266.74082	0.22787	0.00014455	-0.18084	-0.00011472	0.047024	2.9831E-05	634.3777797867066	103.27	1.9164	103.27	102.78	104.7	0.0082703					426	271	3	0	0	0	0.42346	2	27653	27383;27653		8.1555	0	1	38547000			14071	12460	7910	7910	17883;17884	17884					0.11811841617122809
IDKPQARPSKK	11	Unmodified	_IDKPQARPSKK_					0	0	0		L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|38|2|sense	L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|38|2|sense	L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|38|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.8778076171875	2	634.377686	1266.74082	0.46085	0.00029236	-0.68289	-0.00043321	-0.22203	-0.00014085	634.3780412803046	105.8	0.50414	105.8	105.47	105.98	0.0031738					124	71	2	0	0	0	0.46655	3	27996	27996;28006;28035		2.4985	0	1	170440			14072	12460	7910	7910	17885;17886;17887	17885					0.11811841617122809
IDKPQARPSKK	11	Unmodified	_IDKPQARPSKK_					0	0	0		L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|38|2|sense	L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|38|2|sense	L1MD1_dup3168|chr8:33047435-33049452:+|1.6340506230636669|0.3415444526392706|2.26|538.0|38|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.378173828125	2	634.377686	1266.74082	0.46564	0.00029539	-0.30836	-0.00019561	0.15728	9.9775E-05	634.3777273387699	111.49	0.77818	111.5	111.37	112.14	0.01152					197	98	3	0	0	0	0.46655	1	29118	29118		2.4985	0	1	308080			14073	12460	7910	7910	17888	17888					0.11811841617122809
IDKRSCLKR	9	Unmodified	_IDKRSCLKR_					0	0	0			REV__ENSG00000185926|ENST00000328188|OR4C46	REV__ENSG00000185926|ENST00000328188|OR4C46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8268432617188	2	559.826775	1117.639	0.0044278	2.4788E-06	0.095945	5.3713E-05	0.10037	5.6192E-05	559.8269218987394	15.124	0.27404	15.124	15.044	15.319	0					14	9	2	0	0	0	0.33276	1	945	945		3.9444	0.94915	1	53193	+		14074	18421	7911	7911	17889	17889					0.08488271993724084
IDKRSCLKR	9	Unmodified	_IDKRSCLKR_					0	0	0			REV__ENSG00000185926|ENST00000328188|OR4C46	REV__ENSG00000185926|ENST00000328188|OR4C46	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	559.826775	1117.639	0.0044278	2.4788E-06	0.095945	5.3713E-05	0.10037	5.6192E-05	559.8269218987394	15.124	0.27404	15.124	15.044	15.319	0	-0.063319	-0.00026505	NaN	3.9444	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53193	+		14075	18421	7911	7911							0.08488271993724084
IDKRSCLKR	9	Unmodified	_IDKRSCLKR_					0	0	0			REV__ENSG00000185926|ENST00000328188|OR4C46	REV__ENSG00000185926|ENST00000328188|OR4C46	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	559.826775	1117.639	0.13032	7.2955E-05	0.29884	0.0001673	0.42916	0.00024025	559.8273370512454	15.319	0.27352	15.209	15.038	15.312	-0.10981	0.022023	-3.7877E-05	NaN	3.9444	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41261	+		14076	18421	7911	7911							0.08488271993724084
IDKRSCLKR	9	Unmodified	_IDKRSCLKR_					0	0	0			REV__ENSG00000185926|ENST00000328188|OR4C46	REV__ENSG00000185926|ENST00000328188|OR4C46	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	559.826775	1117.639	-0.031118	-1.7421E-05	1.1024	0.00061715	1.0713	0.00059973	559.8274596188791	15.293	0.23318	15.229	15.1	15.333	-0.064414	0.041296	0.00086183	NaN	3.9444	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48706	+		14077	18421	7911	7911							0.08488271993724084
IDLAVYETL	9	Unmodified	_IDLAVYETL_					0	0	0		nc|ENSG00000148339|Q6KCM7-6|SLC25A25;nc|ENSG00000125648|Q9BV35-4|SLC25A23;nc|ENSG00000125648|Q9BV35-2|SLC25A23;ENSG00000125648|ENST00000301454|SLC25A23;nc|ENSG00000148339|Q6KCM7|SLC25A25;nc|ENSG00000125648|Q9BV35-3|SLC25A23;nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25;nc|ENSG00000148339|Q6KCM7-2|SLC25A25;ENSG00000148339|ENST00000373069|SLC25A25	nc|ENSG00000148339|Q6KCM7-6|SLC25A25	nc|ENSG00000148339|Q6KCM7-6|SLC25A25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3212890625	2	518.78169	1035.54883	0.36334	0.0001885	-2.8879	-0.0014982	-2.5245	-0.0013097	519.2806481625726	66.19	0.40613	66.177	65.999	66.406	-0.013588					18	14	2	0	0	0	0.21389	1	16530	16530		25.399	14.575	1	118730			14078	3220	7912	7912	17890	17890					0.032475011463020564
IDLFLFLCARF	11	Unmodified	_IDLFLFLCARF_					0	0	0			REV__ENST00000534275.1_1_11:84473191-84511574:+|nuORF	REV__ENST00000534275.1_1_11:84473191-84511574:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7684020996094	3	453.249415	1356.72641	0.088473	4.0101E-05	-1.8515	-0.00083921	-1.7631	-0.00079911	453.2486678535398	64.879	0.42438	64.968	64.818	65.243	0.088882					19	15	2	0	0	0	0.33202	1	16161	16161		2.8433	0.4085	1	117360	+		14079	22051	7913	7913	17891	17891					0.06232053144594829
IDLMMLVI	8	Unmodified	_IDLMMLVI_					0	0	0		ENSG00000132394|ENST00000254730|EEFSEC;nc|ENSG00000132394|P57772-2|EEFSEC;ENST00000484438.1_1_3:127872521-128060079:+|nuORF	ENSG00000132394|ENST00000254730|EEFSEC	ENSG00000132394|ENST00000254730|EEFSEC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.8774719238281	2	474.26885	946.523147	0.11526	5.4663E-05	0.024703	1.1716E-05	0.13996	6.6379E-05	474.26864387896694	45.772	0.81176	45.832	45.448	46.259	0.059834					39	28	2	0	0	0	0.31934	1	10226	10226		24.674	6.5389	1	425480			14080	3629	7914	7914	17892	17892					0.04774612098651687
IDLMMLVI	8	Unmodified	_IDLMMLVI_					0	0	0		ENSG00000132394|ENST00000254730|EEFSEC;nc|ENSG00000132394|P57772-2|EEFSEC;ENST00000484438.1_1_3:127872521-128060079:+|nuORF	ENSG00000132394|ENST00000254730|EEFSEC	ENSG00000132394|ENST00000254730|EEFSEC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	474.26885	946.523147	0.23636	0.0001121	0.47998	0.00022764	0.71634	0.00033974	474.2690207217085	46.042	0.5516	46.042	45.746	46.298	0	0.11252	0.00010119	NaN	24.674	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352090			14081	3629	7914	7914							0.04774612098651687
IDLMMLVI	8	Unmodified	_IDLMMLVI_					0	0	0		ENSG00000132394|ENST00000254730|EEFSEC;nc|ENSG00000132394|P57772-2|EEFSEC;ENST00000484438.1_1_3:127872521-128060079:+|nuORF	ENSG00000132394|ENST00000254730|EEFSEC	ENSG00000132394|ENST00000254730|EEFSEC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	474.26885	946.523147	0.39367	0.00018671	0.31219	0.00014806	0.70586	0.00033477	474.2690249922924	45.849	0.71853	45.914	45.647	46.366	0.065048	-0.015421	-5.7968E-05	NaN	24.674	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291990			14082	3629	7914	7914							0.04774612098651687
IDLRGSFP	8	Unmodified	_IDLRGSFP_					0	0	0			REV__nc|ENSG00000006757|P41247-2|PNPLA4	REV__nc|ENSG00000006757|P41247-2|PNPLA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.74786376953125	2	452.747985	903.481417	0.13418	6.0752E-05	-0.29773	-0.00013479	-0.16354	-7.4043E-05	452.74782179787195	16.498	0.49644	16.435	16.177	16.674	-0.062532					29	16	2	0	0	0	0.32435	1	1348	1348		23.148	5.0134	1	130150	+		14083	13374	7915	7915	17893	17893					0.02581515726001271
IDMSPNIETPL	11	Unmodified	_IDMSPNIETPL_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2323913574219	3	410.540923	1228.60094	-0.15532	-6.3765E-05	2.363	0.00097011	2.2077	0.00090635	410.5415333232071	26.615	0.57487	26.615	26.296	26.871	0					25	19	2	0	0	0	0.33094	1	4370	4370		7.4771	0.84669	1	31758			14084	7039	7916	7916	17894	17894					-0.004217035022520577
IDPRVIILV	9	Unmodified	_IDPRVIILV_					0	0	0		nc|ENSG00000183715|Q14982-3|OPCML;ENST00000529038.5_1_11:132290089-133402241:-|nuORF;ENSG00000183715|ENST00000524381|OPCML;nc|ENSG00000183715|Q14982|OPCML;nc|ENSG00000183715|Q14982-4|OPCML	nc|ENSG00000183715|Q14982-3|OPCML	nc|ENSG00000183715|Q14982-3|OPCML	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.3397827148438	2	519.33951	1036.66447	0.75595	0.00039259	-0.0043873	-2.2785E-06	0.75156	0.00039031	519.3393401014341	78.466	1.2218	78.466	78.144	79.366	0					137	48	4	0	0	0	0.14786	1	20356	20356		31.268	0	1	2967600			14085	7392	7917	7917	17895	17895					0.14760069787803332
IDPRVIILV	9	Unmodified	_IDPRVIILV_					0	0	0		nc|ENSG00000183715|Q14982-3|OPCML;ENST00000529038.5_1_11:132290089-133402241:-|nuORF;ENSG00000183715|ENST00000524381|OPCML;nc|ENSG00000183715|Q14982|OPCML;nc|ENSG00000183715|Q14982-4|OPCML	nc|ENSG00000183715|Q14982-3|OPCML	nc|ENSG00000183715|Q14982-3|OPCML	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.33984375	2	519.33951	1036.66447	0.59561	0.00030932	0.21426	0.00011127	0.80987	0.0004206	519.3394237160144	78.419	1.6917	78.477	78.164	79.856	0.058151					155	68	4	0	0	0	0.14786	1	20348	20348		31.268	0	1	2868900			14086	7392	7917	7917	17896	17896					0.14760069787803332
IDPRVIILV	9	Unmodified	_IDPRVIILV_					0	0	0		nc|ENSG00000183715|Q14982-3|OPCML;ENST00000529038.5_1_11:132290089-133402241:-|nuORF;ENSG00000183715|ENST00000524381|OPCML;nc|ENSG00000183715|Q14982|OPCML;nc|ENSG00000183715|Q14982-4|OPCML	nc|ENSG00000183715|Q14982-3|OPCML	nc|ENSG00000183715|Q14982-3|OPCML	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.339599609375	2	519.33951	1036.66447	0.75445	0.00039182	0.052351	2.7188E-05	0.80681	0.00041901	519.3393284717947	78.526	1.372	78.496	78.17	79.542	-0.030434					126	55	4	0	0	0	0.11201	3	20266	20266;20315;20360		36.506	1.2772	1	2082300			14087	7392	7917	7917	17897;17898;17899	17897					0.14760069787803332
IDQLIWAW	8	Unmodified	_IDQLIWAW_					0	0	0			REV__ENSG00000138600|ENST00000261854|SPPL2A	REV__ENSG00000138600|ENST00000261854|SPPL2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.815185546875	2	522.779285	1043.54402	0.1503	7.8571E-05	-0.65295	-0.00034135	-0.50266	-0.00026278	522.779111332569	35.467	0.52304	35.467	35.17	35.693	0					26	18	2	0	0	0	0.34092	1	7039	7039		13.508	2.684	1	228070	+		14088	15934	7918	7918	17900	17900					0.023986617941773147
IDRIFLWVF	9	Unmodified	_IDRIFLWVF_					0	0	0		ENSG00000080644|ENST00000326828|CHRNA3;nc|ENSG00000080644|P32297-1|CHRNA3	ENSG00000080644|ENST00000326828|CHRNA3	ENSG00000080644|ENST00000326828|CHRNA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.26953125	3	403.565732	1207.67537	-0.038411	-1.5501E-05	-4.3621	-0.0017604	-4.4005	-0.0017759	403.56392029522306	52.598	0.13221	52.649	52.579	52.711	0.050575					6	4	2	0	0	0	0.25689	1	12371	12371		4.5289	1.2092	1	138550			14089	1163	7919	7919	17901	17901					0.07983472162072758
IDRIPSKFPL	10	Unmodified	_IDRIPSKFPL_					0	0	0			REV__ENSG00000135541|ENST00000265602|AHI1	REV__ENSG00000135541|ENST00000265602|AHI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8345336914062	2	593.353148	1184.69174	0.60489	0.00035891	-0.28809	-0.00017094	0.3168	0.00018797	593.3526707988331	63.906	0.35477	63.897	63.69	64.045	-0.0095329					20	12	2	0	0	0	0.31143	1	15781	15781		17.113	2.7075	1	238850	+		14090	15748	7920	7920	17902	17902					0.1067855332819363
IDRSCISVR	9	Unmodified	_IDRSCISVR_					0	0	0			REV__ENST00000367545.7_1_6:145173639-145173798:+|nuORF	REV__ENST00000367545.7_1_6:145173639-145173798:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7822875976562	2	524.782033	1047.54951	0.74433	0.00039061	-0.13446	-7.0563E-05	0.60987	0.00032005	524.7819161793502	20.737	0.73395	20.684	20.355	21.088	-0.052912					62	25	3	0	0	0	0.32638	2	2641	2588;2641		4.897	1.9018	1	144200	+		14091	20316	7921	7921	17903;17904	17904					0.02764017314348166
IDRSCISVR	9	Unmodified	_IDRSCISVR_					0	0	0			REV__ENST00000367545.7_1_6:145173639-145173798:+|nuORF	REV__ENST00000367545.7_1_6:145173639-145173798:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.782033	1047.54951	0.74433	0.00039061	-0.13446	-7.0563E-05	0.60987	0.00032005	524.7819161793502	20.737	0.73395	20.684	20.355	21.088	-0.052912	0.047509	-0.00015085	NaN	4.897	62	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144200	+		14092	20316	7921	7921							0.02764017314348166
IDSYRKRGE	9	Unmodified	_IDSYRKRGE_					0	0	0			REV__nc|ENSG00000089639|Q9P107-2|GMIP	REV__nc|ENSG00000089639|Q9P107-2|GMIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.7645263671875	2	562.296362	1122.57817	0.1547	8.6986E-05	0.29912	0.00016819	0.45381	0.00025518	562.2966764135962	22.745	0.64248	22.657	22.403	23.046	-0.087608					35	22	2	0	0	0	0.24688	1	3214	3214		14.838	1.7958	1	86329	+		14093	14031	7922	7922	17905	17905					0.021784582151667564
IDVSVKSMFQI	11	Unmodified	_IDVSVKSMFQI_					0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.8967590332031	3	422.89693	1265.66896	0.0099766	4.2191E-06	0.073508	3.1086E-05	0.083485	3.5305E-05	422.89685351488265	31.575	0.84164	31.616	31.281	32.123	0.040991					53	29	3	0	0	0	0.39698	1	5952	5952		11.631	0.56609	1	853100	+		14094	21195	7923	7923	17906	17906					0.046751661484222495
IDVTIPLTSLK	11	Unmodified	_IDVTIPLTSLK_					0	0	0			REV__ENSG00000011007|ENST00000613537|ELOA	REV__ENSG00000011007|ENST00000613537|ELOA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	400.58056640625	3	400.579706	1198.71729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.63	1	103.63	103.13	104.13	0								0	0	0	0.35034	1	27526	27526		4.1166	2.3744	1		+		14095	13421	7924	7924	17907	17907					0.1258798305993878
IDVTLHIKQSQ	11	Unmodified	_IDVTLHIKQSQ_					0	0	0			REV__ENSG00000257315|ENST00000550078|ZBED6	REV__ENSG00000257315|ENST00000550078|ZBED6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.5917053222656	3	427.910227	1280.70885	-0.20148	-8.6217E-05	1.6819	0.00071969	1.4804	0.00063348	427.91163817679	16.208	1.139	16.208	15.842	16.981	0					97	39	4	0	0	0	0.33037	1	1265	1265		3.8459	0	1	395120	+		14096	19260	7925	7925	17908	17908					0.0797242914331946
IDVVLEKAM	9	Unmodified	_IDVVLEKAM_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3062438964844	2	509.286085	1016.55762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.065	1	83.065	82.565	83.565	0								0	0	0	0.23852	1	21714	21714		10.074	2.7847	1				14097	3655	7926	7926	17909	17909					0.050001515111148365
IDWEQVCLL	9	Unmodified	_IDWEQVCLL_					0	0	0		ENSG00000172680|ENST00000311923|MOS	ENSG00000172680|ENST00000311923|MOS	ENSG00000172680|ENST00000311923|MOS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7808837890625	2	559.781167	1117.54778	0.44275	0.00024784	-2.1125	-0.0011826	-1.6698	-0.00093472	559.7799429751637	77.077	1.0746	77.077	76.617	77.691	0					61	39	2	0	0	0	0.17787	1	19902	19902		26.884	0.61551	1	326530			14098	6654	7927	7927	17910	17910					-0.006290364942515225
IDYIARTQP	9	Unmodified	_IDYIARTQP_					0	0	0			REV__ENST00000460594.5_1_1:6714320-6761860:-|nuORF	REV__ENST00000460594.5_1_1:6714320-6761860:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2508544921875	2	538.790381	1075.56621	0.45666	0.00024604	-2.4156	-0.0013015	-1.9589	-0.0010555	538.7902249949127	41.239	0.46193	41.336	41.015	41.477	0.096626					36	16	4	0	0	0	0.23784	1	8765	8765		5.7319	0	1	549850	+		14099	13391	7928	7928	17911	17911					0.03144841471953441
IDYILRHMPTL	11	Unmodified	_IDYILRHMPTL_					0	0	0		nc|ENSG00000153303|Q8N878-2|FRMD1;ENSG00000153303|ENST00000283309|FRMD1	nc|ENSG00000153303|Q8N878-2|FRMD1	nc|ENSG00000153303|Q8N878-2|FRMD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.25872802734375	3	457.919957	1370.73804	0.56132	0.00025704	2.1244	0.00097282	2.6857	0.0012299	458.25526515437133	36.302	0.43607	36.388	36.244	36.68	0.08625					22	14	2	0	0	0	0.33274	1	7353	7353		1.9275	0	1	296420			14100	5072	7929	7929	17912	17912					0.06750250167965532
IDYNLWENW	9	Unmodified	_IDYNLWENW_					0	0	0			REV__ENSG00000121879|ENST00000263967|PIK3CA	REV__ENSG00000121879|ENST00000263967|PIK3CA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.26629638671875	3	418.192623	1251.55604	-0.17892	-7.4822E-05	1.0294	0.00043049	0.85048	0.00035566	418.1930860297133	41.383	0.40323	41.383	41.152	41.555	0					46	14	5	0	0	0	0.25706	1	8856	8856		4.1895	2.5972	1	660550	+		14101	15133	7930	7930	17913	17913					-0.05967766253297668
IDYNLWENW	9	Unmodified	_IDYNLWENW_					0	0	0			REV__ENSG00000121879|ENST00000263967|PIK3CA	REV__ENSG00000121879|ENST00000263967|PIK3CA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	418.192623	1251.55604	-0.087898	-3.6758E-05	0.91718	0.00038356	0.82928	0.0003468	418.19298581027596	40.96	0.59456	41.056	40.803	41.397	0.096626	-0.12517	2.0524E-05	NaN	4.1895	57	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	842560	+		14102	15133	7930	7930							-0.05967766253297668
IDYPNRLLY	9	Unmodified	_IDYPNRLLY_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3294067382812	2	583.813856	1165.61316	0.42178	0.00024624	0.41735	0.00024366	0.83913	0.0004899	583.813998372616	54.121	0.76453	54.185	53.902	54.667	0.063202					62	28	3	0	0	0	0.16283	1	12921	12921		29.082	1.4528	1	1202000			14103	1183	7931	7931	17914	17914					0.03697701023111222
IDYRSLIQV	9	Unmodified	_IDYRSLIQV_					0	0	0			REV__ENSG00000213918|ENST00000246949|DNASE1	REV__ENSG00000213918|ENST00000246949|DNASE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.269775390625	2	553.813856	1105.61316	0.4766	0.00026395	2.6717	0.0014796	3.1483	0.0017436	553.8168040560741	63.626	0.55492	63.617	63.408	63.963	-0.0085564					29	19	2	0	0	0	0.1854	1	15733	15733		25.399	0	1	192690	+		14104	19047	7932	7932	17915	17915					0.06457701023077789
IDYTRHTL	8	Unmodified	_IDYTRHTL_					0	0	0		nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4	nc|ENSG00000115540|Q9Y3A3-2|MOB4	nc|ENSG00000115540|Q9Y3A3-2|MOB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.80023193359375	2	509.769448	1017.52434	0.32199	0.00016414	0.50157	0.00025569	0.82357	0.00041983	509.7701117010979	57.731	1.4478	57.731	57.116	58.564	0					91	51	3	0	0	0	0.32435	1	14124	14124		16.942	1.0951	1	883400			14105	2658	7933	7933	17916	17916					0.01628285783431238
IDYVLVFGE	9	Unmodified	_IDYVLVFGE_					0	0	0			REV__nc|ENSG00000134533|Q96A58-2|RERG	REV__nc|ENSG00000134533|Q96A58-2|RERG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2791137695312	2	527.776408	1053.53826	0.21487	0.00011341	0.8469	0.00044698	1.0618	0.00056038	528.2798222600574	99.254	0.27814	99.305	99.245	99.523	0.050888					61	37	2	0	0	0	0.25526	1	26547	26547		7.9102	0	1	105910	+		14106	15683	7934	7934	17917	17917					0.01363518491848481
IDYVLVFGE	9	Unmodified	_IDYVLVFGE_					0	0	0			REV__nc|ENSG00000134533|Q96A58-2|RERG	REV__nc|ENSG00000134533|Q96A58-2|RERG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2791137695312	2	527.776408	1053.53826	0.21929	0.00011573	-0.32693	-0.00017255	-0.10765	-5.6813E-05	527.7741632209165	99.092	0.42168	99.143	98.846	99.268	0.050888					94	55	2	0	0	0	0.25526	1	26547	26547		7.9102	0	1	129270	+		14107	15683	7934	7934	17918	17918					0.01363518491848481
IDYVLVFGE	9	Unmodified	_IDYVLVFGE_					0	0	0			REV__nc|ENSG00000134533|Q96A58-2|RERG	REV__nc|ENSG00000134533|Q96A58-2|RERG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.77392578125	2	527.776408	1053.53826	0.44735	0.0002361	-0.64987	-0.00034298	-0.20251	-0.00010688	527.7739856993098	99.256	0.589	99.249	98.87	99.459	-0.006897					138	75	2	0	0	0	0.30623	1	26616	26616		7.9102	0	1	156490	+		14108	15683	7934	7934	17919	17919					0.01363518491848481
IDYVLVFGE	9	Unmodified	_IDYVLVFGE_					0	0	0			REV__nc|ENSG00000134533|Q96A58-2|RERG	REV__nc|ENSG00000134533|Q96A58-2|RERG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	527.776408	1053.53826	0.10484	5.5334E-05	0.1191	6.2858E-05	0.22394	0.00011819	528.2799870501296	99.343	0.54886	99.343	98.945	99.494	0	0.018707	-0.00033956	NaN	7.9102	119	67	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71585	+		14109	15683	7934	7934							0.01363518491848481
IEAQVQARGKL	11	Unmodified	_IEAQVQARGKL_					0	0	0			REV__nc|ENSG00000105479|Q96M63-5|ODAD1	REV__nc|ENSG00000105479|Q96M63-5|ODAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.90679931640625	3	404.906816	1211.69862	-0.24601	-9.961E-05	0.35937	0.00014551	0.11337	4.5903E-05	404.90689540411404	16.141	0.62917	16.141	15.892	16.521	0					57	21	4	0	0	0	0.42762	1	1222	1222		3.8459	0	1	287270	+		14110	14460	7935	7935	17920	17920					0.10123866208755317
IECETVLLS	9	Unmodified	_IECETVLLS_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-6|MON2	REV__nc|ENSG00000061987|Q7Z3U7-6|MON2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.26629638671875	2	503.759901	1005.50525	0.25022	0.00012605	1.9686	0.0009917	2.2188	0.0011177	504.2630954712806	67.615	0.72839	67.599	67.262	67.991	-0.016296					45	24	3	0	0	0	0.2451	1	17071	17071		15.847	5.0233	1	188550	+		14111	22890	7936	7936	17921	17921					0.002715683775022626
IECETVLLS	9	Unmodified	_IECETVLLS_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-6|MON2	REV__nc|ENSG00000061987|Q7Z3U7-6|MON2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	503.759901	1005.50525	0.33113	0.00016681	1.8939	0.00095407	2.225	0.0011209	504.2629240348467	67.746	0.52048	67.746	67.45	67.97	0	0.073593	-4.0218E-05	NaN	21.747	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	441930	+		14112	22890	7936	7936							0.002715683775022626
IECHDGWG	8	Unmodified	_IECHDGWG_					0	0	0			REV__ENSG00000168056|ENST00000301873|LTBP3	REV__ENSG00000168056|ENST00000301873|LTBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7894287109375	2	458.684527	915.354502	0.043275	1.985E-05	0.31159	0.00014292	0.35487	0.00016277	458.6846884184467	67.45	1.538	67.434	66.403	67.941	-0.016296					60	53	2	0	0	0	0.34319	1	16685	16685		5.7604	0	1	156120	+		14113	17435	7937	7937	17922	17922					-0.10656153490640463
IEDNSLLMF	9	Unmodified	_IEDNSLLMF_					0	0	0			REV__ENSG00000178235|ENST00000674365|SLITRK1	REV__ENSG00000178235|ENST00000674365|SLITRK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2639770507812	2	541.26535	1080.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105	1	105	104.5	105.5	0								0	0	0	0.25352	1	27843	27843		5.2307	0.90143	1		+		14114	18027	7938	7938	17923	17923					-0.02089029248213592
IEERKGVLF	9	Unmodified	_IEERKGVLF_					0	0	0			REV__ENST00000495754.1_1_2:98351695-98354405:+|nuORF	REV__ENST00000495754.1_1_2:98351695-98354405:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.8179321289062	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.05	1	115.05	114.55	115.55	0								0	0	0	0.25631	1	29827	29827		4.3292	0.73274	1		+		14115	14861	7939	7939	17924	17924					0.07702004885709357
IEERKGVLF	9	Unmodified	_IEERKGVLF_					0	0	0			REV__ENST00000495754.1_1_2:98351695-98354405:+|nuORF	REV__ENST00000495754.1_1_2:98351695-98354405:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8169555664062	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.22	1	115.24	114.74	115.74	0.018738								0	0	0	0.25631	1	29937	29937		4.3292	0	1		+		14116	14861	7939	7939	17925	17925					0.07702004885709357
IEERSRDF	8	Unmodified	_IEERSRDF_					0	0	0			REV__ENST00000505854.5_1_5:122110798-122139331:+|nuORF	REV__ENST00000505854.5_1_5:122110798-122139331:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7905883789062	2	526.261988	1050.50942	0.64419	0.00033901	-4.2939	-0.0022597	-3.6497	-0.0019207	526.2615031069107	36.67	0.083599	36.67	36.616	36.7	0					4	2	2	0	0	0	0.34092	1	7458	7458		13.508	1.8676	1	35565	+		14117	18986	7940	7940	17926	17926					-0.01381206084556652
IEESYVHLDI	10	Unmodified	_IEESYVHLDI_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;FRYL|p.E2601Dfs*12|1|0.03|ENSG00000075539|chr4:48515162-48515163|-/TACTTTCA|frameshift_variant;ENST00000502925.1_1_4:48549577-48553572:-|nuORF	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.5476379394531	3	406.539799	1216.59757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.604	1	33.671	33.171	34.171	0.06636								0	0	0	0.36252	1	6537	6537		9.544	0.56773	1				14118	1048	7941	7941	17927	17927					-0.0020663028460603527
IEEVFPLDK	9	Unmodified	_IEEVFPLDK_					0	0	0			REV__nc|ENSG00000163535|Q562F6-2|SGO2	REV__nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8060302734375	2	545.294965	1088.57538	0.46232	0.0002521	-2.3919	-0.0013043	-1.9295	-0.0010522	545.2933970061787	23.505	0.43976	23.43	23.203	23.643	-0.075205					24	15	2	0	0	0	0.26031	1	3512	3512		3.5965	0.70727	1	104170	+		14119	17068	7942	7942	17928	17928					0.0346319003760982
IEEVTPKYEL	10	Unmodified	_IEEVTPKYEL_					0	0	0			REV__nc|ENSG00000042813|Q9BS86-2|ZPBP	REV__nc|ENSG00000042813|Q9BS86-2|ZPBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5641784667969	3	407.551816	1219.63362	0.2619	0.00010674	1.6029	0.00065328	1.8648	0.00076002	407.55256654370396	32.069	0.28063	32.111	31.994	32.275	0.042366					11	9	2	0	0	0	0.35961	1	6062	6062		10.899	1.9227	1	41905	+		14120	13533	7943	7943	17929	17929					0.03258826892260913
IEFPPPPPLDA	11	Unmodified	_IEFPPPPPLDA_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.8165283203125	2	596.816064	1191.61758	0.18518	0.00011052	0.28503	0.00017011	0.47022	0.00028063	596.8164218162312	27.988	1.3533	27.984	27.545	28.898	-0.0042572					179	47	5	0	0	0	0.42346	1	4962	4962		8.1555	0.54658	1	6887700			14121	4941	7944	7944	17930	17930					0.02943165446004059
IEFTSILKH	9	Unmodified	_IEFTSILKH_					0	0	0		ENST00000569826.2_1_15:42864283-42864628:+|nuORF	ENST00000569826.2_1_15:42864283-42864628:+|nuORF	ENST00000569826.2_1_15:42864283-42864628:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7018432617188	2	544.310949	1086.60735	0.29071	0.00015824	-1.9559	-0.0010646	-1.6651	-0.00090635	544.3119344131331	61.455	0.58156	61.455	61.254	61.836	0					50	21	3	0	0	0	0.17611	1	15090	15090		26.884	9.9414	1	490360			14122	12013	7945	7945	17931	17931					0.06750602511442594
IEFTSILKH	9	Unmodified	_IEFTSILKH_					0	0	0		ENST00000569826.2_1_15:42864283-42864628:+|nuORF	ENST00000569826.2_1_15:42864283-42864628:+|nuORF	ENST00000569826.2_1_15:42864283-42864628:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7020874023438	2	544.310949	1086.60735	0.26367	0.00014352	-3.5274	-0.00192	-3.2637	-0.0017765	544.8093035664464	61.381	0.51034	61.478	61.248	61.759	0.096985					49	18	4	0	0	0	0.17611	1	15054	15054		20.454	1.1966	1	377060			14123	12013	7945	7945	17932	17932					0.06750602511442594
IEFTSILKH	9	Unmodified	_IEFTSILKH_					0	0	0		ENST00000569826.2_1_15:42864283-42864628:+|nuORF	ENST00000569826.2_1_15:42864283-42864628:+|nuORF	ENST00000569826.2_1_15:42864283-42864628:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7020263671875	2	544.310949	1086.60735	0.32041	0.0001744	-2.7947	-0.0015212	-2.4743	-0.0013468	544.3116967865285	61.428	0.43084	61.418	61.296	61.727	-0.0094566					42	15	3	0	0	0	0.20651	1	15081	15081		20.454	1.1966	1	297760			14124	12013	7945	7945	17933	17933					0.06750602511442594
IEGYFDEKF	9	Unmodified	_IEGYFDEKF_					0	0	0			REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF	REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.2689208984375	2	574.268947	1146.52334	0.2694	0.00015471	-0.77814	-0.00044686	-0.50874	-0.00029215	574.2683495321107	61.027	2.2657	61.027	60.664	62.93	0					170	84	3	0	0	0	0.034444	3	14972	14918;14972;15024		58.679	28.838	1	4347500	+		14125	15715	7946	7946	17934;17935;17936	17935					-0.044059733761287134
IEGYFDEKF	9	Unmodified	_IEGYFDEKF_					0	0	0			REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF	REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2688598632812	2	574.268947	1146.52334	0.30735	0.0001765	-0.63694	-0.00036578	-0.32959	-0.00018927	574.2684257585447	60.954	2.1806	61.051	60.726	62.906	0.096985					134	79	2	0	0	0	0.034444	3	14891	14891;14938;14989		58.679	33.28	1	4812000	+		14126	15715	7946	7946	17937;17938;17939	17937					-0.044059733761287134
IEGYFDEKF	9	Unmodified	_IEGYFDEKF_					0	0	0			REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF	REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.269775390625	2	574.268947	1146.52334	0.23992	0.00013778	-0.6999	-0.00040193	-0.45998	-0.00026415	574.2684341938643	61.023	2.3994	61.013	60.735	63.135	-0.0094566					158	88	3	0	0	0	0.034444	4	14926	14926;14981;15027;15259		58.679	25.399	1	4975700	+		14127	15715	7946	7946	17940;17941;17942;17943	17940					-0.044059733761287134
IEGYFDEKF	9	Unmodified	_IEGYFDEKF_					0	0	0			REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF	REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.725830078125	2	574.268947	1146.52334	0.23992	0.00013778	-0.6999	-0.00040193	-0.45998	-0.00026415	574.2684341938643	61.023	2.3994	61.013	60.735	63.135	-0.0094566					158	88	3	0	0	0	0.24289	1	14900	14900		18.146	5.6148	1	4975700	+		14128	15715	7946	7946	17944	17944					-0.044059733761287134
IEGYFDEKF	9	Unmodified	_IEGYFDEKF_					0	0	0			REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF	REV__ENST00000479197.1_1_9:79003455-79003560:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	574.268947	1146.52334	0.2694	0.00015471	-0.77814	-0.00044686	-0.50874	-0.00029215	574.2683495321107	61.027	2.2657	61.027	60.664	62.93	0	-0.0030282	-7.2397E-05	NaN	58.679	170	84	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4347500	+		14129	15715	7946	7946							-0.044059733761287134
IEHLADVVT	9	Unmodified	_IEHLADVVT_					0	0	0			REV__nc|ENSG00000163453|Q16270-2|IGFBP7	REV__nc|ENSG00000163453|Q16270-2|IGFBP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7722473144531	2	498.771657	995.528761	0.17191	8.5742E-05	0.30525	0.00015225	0.47715	0.00023799	498.77179651379697	16.777	0.54516	16.662	16.395	16.94	-0.11434					42	19	3	0	0	0	0.31038	1	1469	1469		7.2892	0.56607	1	197340			14130	17053	7947	7947	17945	17945					0.030817502063428037
IEIANALCL	9	Unmodified	_IEIANALCL_					0	0	0		nc|ENSG00000197757|P09630-2|HOXC6;ENSG00000106006|ENST00000222728|HOXA6;ENSG00000197757|ENST00000243108|HOXC6	nc|ENSG00000197757|P09630-2|HOXC6	nc|ENSG00000197757|P09630-2|HOXC6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2558898925781	2	480.265153	958.515753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.688	1	65.688	65.188	66.188	0								0	0	0	0.19013	1	16400	16400		25.399	12.868	1				14131	2047	7948	7948	17946	17946					0.03483595822569896
IEITIKSPEKI	11	Unmodified	_IEITIKSPEKI_					0	0	0		nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.2581481933594	3	424.258744	1269.7544	-0.1436	-6.0923E-05	-1.8998	-0.00080601	-2.0434	-0.00086693	424.25790891936583	26.852	0.56587	26.83	26.592	27.158	-0.021412					42	19	3	0	0	0	0.41517	1	4478	4478		9.2438	2.2067	1	203000			14132	4824	7949	7949	17947	17947					0.13031654605720178
IEKANNLLY	9	Unmodified	_IEKANNLLY_					0	0	0		nc|ENSG00000170820|P23945-2|FSHR;nc|ENSG00000170820|P23945-3|FSHR;ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-4|FSHR	nc|ENSG00000170820|P23945-2|FSHR	nc|ENSG00000170820|P23945-2|FSHR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8292236328125	2	539.300581	1076.58661	0.50464	0.00027215	1.6563	0.00089327	2.161	0.0011654	539.3007407101807	44.167	0.40686	44.242	44.011	44.418	0.075073					30	14	3	0	0	0	0.21538	1	9724	9724		26.268	13.226	1	765530			14133	6481	7950	7950	17948	17948					0.05138012131783398
IEKDPHKQKL	10	Unmodified	_IEKDPHKQKL_					0	0	0			REV__nc|ENSG00000183023|P32418-2|SLC8A1	REV__nc|ENSG00000183023|P32418-2|SLC8A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.357177734375	2	618.358962	1234.70337	0.10699	6.6161E-05	0.27004	0.00016698	0.37704	0.00023314	618.8614937254433	94.022	1.2472	94.022	93.187	94.434	0					178	106	3	0	0	0	0.40262	1	25138	25138		2.9952	0.26005	1	150060	+		14134	18232	7951	7951	17949	17949					0.0954075035151618
IEKEDYYF	8	Unmodified	_IEKEDYYF_					0	0	0			REV__ENSG00000143882|ENST00000272238|ATP6V1C2	REV__ENSG00000143882|ENST00000272238|ATP6V1C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.83056640625	2	553.755672	1105.49679	0.6028	0.0003338	-2.3806	-0.0013183	-1.7778	-0.00098449	554.2548425878848	83.296	0.38033	83.296	83.123	83.504	0					28	14	3	0	0	0	0.34039	1	21824	21824		6.7232	0	1	144620	+		14135	16209	7952	7952	17950	17950					-0.05173662267475265
IEKEDYYF	8	Unmodified	_IEKEDYYF_					0	0	0			REV__ENSG00000143882|ENST00000272238|ATP6V1C2	REV__ENSG00000143882|ENST00000272238|ATP6V1C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8302001953125	2	553.755672	1105.49679	0.49374	0.00027341	-2.242	-0.0012415	-1.7483	-0.00096813	553.7563347614023	83.191	0.32259	83.264	83.052	83.375	0.073097					26	11	3	0	0	0	0.32886	1	21735	21735		10.824	2.9138	1	127760	+		14136	16209	7952	7952	17951	17951					-0.05173662267475265
IEKEYLQR	8	Unmodified	_IEKEYLQR_					0	0	0			REV__CON__H-INV:HIT000292931	REV__CON__H-INV:HIT000292931	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3305053710938	2	539.798206	1077.58186	0.45738	0.00024689	0.76753	0.00041431	1.2249	0.00066121	539.7985382977979	80.516	0.535	80.516	80.064	80.599	0					26	19	2	0	0	0	0.30499	1	20924	20924		32.786	0	1	166250	+	+	14137	13247	7953	7953	17952	17952					0.046171279889904326
IEKEYLQR	8	Unmodified	_IEKEYLQR_					0	0	0			REV__CON__H-INV:HIT000292931	REV__CON__H-INV:HIT000292931	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3298950195312	2	539.798206	1077.58186	0.7216	0.00038952	0.074622	4.0281E-05	0.79622	0.0004298	539.7977246912569	83.098	0.72177	83.098	82.733	83.455	0					42	27	2	0	0	0	0.34131	1	21788	21788		12.532	3.9383	1	72272	+	+	14138	13247	7953	7953	17953	17953					0.046171279889904326
IEKEYLQR	8	Unmodified	_IEKEYLQR_					0	0	0			REV__CON__H-INV:HIT000292931	REV__CON__H-INV:HIT000292931	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.9854125976562	2	539.798206	1077.58186	0.31338	0.00016916	2.0822	0.001124	2.3956	0.0012931	540.3016015605019	96.694	0.28292	96.764	96.549	96.832	0.070465					46	28	2	0	0	0	0.34226	1	25794	25794		10.074	0.6908	1	129280	+	+	14139	13247	7953	7953	17954	17954					0.046171279889904326
IEKEYLQR	8	Unmodified	_IEKEYLQR_					0	0	0			REV__CON__H-INV:HIT000292931	REV__CON__H-INV:HIT000292931	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.9854125976562	2	539.798206	1077.58186	0.32214	0.00017389	3.0421	0.0016421	3.3642	0.001816	540.302183755396	96.434	0.36339	96.512	96.222	96.585	0.077408					42	35	2	0	0	0	0.34226	1	25794	25794		10.074	0.6908	1	58460	+	+	14140	13247	7953	7953	17955	17955					0.046171279889904326
IEKEYLQR	8	Unmodified	_IEKEYLQR_					0	0	0			REV__CON__H-INV:HIT000292931	REV__CON__H-INV:HIT000292931	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.31982421875	2	539.798206	1077.58186	0.56766	0.00030642	1.931	0.0010424	2.4987	0.0013488	540.3013440156243	96.428	0.26523	96.423	96.227	96.492	-0.0055466					33	26	2	0	0	0	0.42371	1	25738	25738		14.838	3.198	1	81370	+	+	14141	13247	7953	7953	17956	17956					0.046171279889904326
IEKEYLQR	8	Unmodified	_IEKEYLQR_					0	0	0			REV__CON__H-INV:HIT000292931	REV__CON__H-INV:HIT000292931	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3297729492188	2	539.798206	1077.58186	0.68596	0.00037028	0.0333	1.7975E-05	0.71926	0.00038826	539.7977312408835	82.846	0.58054	82.826	82.646	83.226	-0.020584					37	22	2	0	0	0	0.26342	1	21712	21712		47.749	3.9763	1	105410	+	+	14142	13247	7953	7953	17957	17957					0.046171279889904326
IEKEYLQR	8	Unmodified	_IEKEYLQR_					0	0	0			REV__CON__H-INV:HIT000292931	REV__CON__H-INV:HIT000292931	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2843017578125	2	539.798206	1077.58186	0.74525	0.00040228	0.60134	0.0003246	1.3466	0.00072688	539.7982299985438	85.179	0.84834	85.167	84.683	85.531	-0.01284					41	33	2	0	0	0	0.33988	1	22321	22321		13.042	3.6593	1	73037	+	+	14143	13247	7953	7953	17958	17958					0.046171279889904326
IEKFRQLVKD	10	Unmodified	_IEKFRQLVKD_					0	0	0		ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.3734741210938	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.176	1	95.258	94.758	95.758	0.082779								0	0	0	0.37807	1	25414	25414		2.9952	0.26005	1				14144	921	7954	7954	17959	17959					0.10829323385587486
IEKFRQLVKD	10	Unmodified	_IEKFRQLVKD_					0	0	0		ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.3728637695312	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.585	1	98.647	98.147	99.147	0.061516								0	0	0	0.37925	1	26390	26390		2.4985	0.84587	1				14145	921	7954	7954	17960	17960					0.10829323385587486
IEKFRQLVKD	10	Unmodified	_IEKFRQLVKD_					0	0	0		ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3731689453125	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.143	1	97.138	96.638	97.638	-0.0055466								0	0	0	0.37807	1	25999	25999		2.9952	0.26005	1				14146	921	7954	7954	17961	17961					0.10829323385587486
IEKFTDFLRLF	11	Unmodified	_IEKFTDFLRLF_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.3106994628906	3	476.934372	1427.78129	0.30808	0.00014693	-1.3918	-0.00066379	-1.0837	-0.00051686	476.9335923190743	53.567	0.71085	53.567	53.038	53.749	0					45	26	3	0	0	0	0.33296	1	12540	12540		1.2148	0	1	347060			14147	6334	7955	7955	17962	17962					0.08450763216865198
IEKGGRQTL	9	Unmodified	_IEKGGRQTL_					0	0	0			REV__ENST00000513194.1_1_Y:21636782-21643633:-|nuORF	REV__ENST00000513194.1_1_Y:21636782-21643633:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.634521484375	2	501.290548	1000.56654	0.22668	0.00011363	0.24669	0.00012366	0.47337	0.00023729	501.290261035751	95.852	0.064407	95.93	95.898	95.962	0.077408					7	5	2	0	0	0	0.24993	1	25616	25616		8.7454	0	1	43601	+		14148	21820	7956	7956	17963	17963					0.06628261191815454
IEKGTLTQR	9	Unmodified	_IEKGTLTQR_					0	0	0			REV__ENST00000604306.1_1_14:24684951-24700866:-|nuORF	REV__ENST00000604306.1_1_14:24684951-24700866:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3032836914062	2	523.303655	1044.59276	0.24256	0.00012693	-0.42969	-0.00022486	-0.18714	-9.793E-05	523.3033251497191	80.829	0.58663	80.894	80.546	81.133	0.065094					46	24	2	0	0	0	0.3208	1	20919	20919		5.7319	0.43497	1	1052300	+		14149	21970	7957	7957	17964	17964					0.07224530363282611
IEKILHPPSK	10	Unmodified	_IEKILHPPSK_					0	0	0			REV__ENSG00000143641|ENST00000366672|GALNT2	REV__ENSG00000143641|ENST00000366672|GALNT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.2889404296875	2	581.353148	1160.69174	0.27293	0.00015867	0.17542	0.00010198	0.44834	0.00026065	581.3529548805069	49.091	0.48991	49.136	48.935	49.425	0.044891					35	17	3	0	0	0	0.30978	1	11315	11315		14.405	0	1	390240	+		14150	16192	7958	7958	17965	17965					0.11782553328180256
IEKKESIGLLF	11	Unmodified	_IEKKESIGLLF_					0	0	0			REV__ENST00000378434.8_1_13:48986639-48986726:-|nuORF	REV__ENST00000378434.8_1_13:48986639-48986726:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2555236816406	3	426.255223	1275.74384	0.23316	9.9387E-05	0.35676	0.00015207	0.58992	0.00025146	426.25541837740747	54.443	0.83856	54.443	54.026	54.864	0					78	30	3	0	0	0	0.39698	1	12949	12949		11.631	2.3876	1	910170	+		14151	20519	7959	7959	17966	17966					0.11699671951282653
IEKLGSKDR	9	Unmodified	_IEKLGSKDR_					0	0	0		ENSG00000114978|ENST00000396049|MOB1A	ENSG00000114978|ENST00000396049|MOB1A	ENSG00000114978|ENST00000396049|MOB1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3034057617188	2	523.303655	1044.59276	0.7238	0.00037877	-1.0118	-0.00052946	-0.28796	-0.00015069	523.3029460313417	84.296	0.66263	84.296	84.057	84.72	0					36	24	2	0	0	0	0.32638	1	22109	22109		4.897	0.141	1	93890			14152	2598	7960	7960	17967	17967					0.07224530363282611
IEKLKERSS	9	Unmodified	_IEKLKERSS_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3172607421875	2	545.316763	1088.61897	0.44923	0.00024497	-0.11532	-6.2886E-05	0.33391	0.00018209	545.3167475035995	80.336	3.7431	80.336	79.338	83.081	0					624	150	6	0	0	0	0.26612	3	21366	21145;21186;21366		13.906	13.906	1	16346000			14153	1633	7961	7961	17968;17969;17970	17970					0.07820799534761136
IEKLKERSS	9	Unmodified	_IEKLKERSS_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.8246459960938	2	545.316763	1088.61897	0.63002	0.00034356	-0.27635	-0.0001507	0.35367	0.00019286	545.316440069204	87.743	1.2935	87.743	86.755	88.049	0					79	57	2	0	0	0	0.24848	1	23231	23231		9.3831	9.3831	1	193730			14154	1633	7961	7961	17971	17971					0.07820799534761136
IEKLKERSS	9	Unmodified	_IEKLKERSS_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3170776367188	2	545.316763	1088.61897	0.44591	0.00024316	-0.03167	-1.727E-05	0.41424	0.00022589	545.3167857690152	80.248	3.793	80.313	79.277	83.07	0.065102					607	160	5	0	0	0	0.26612	2	21127	21127;21170		13.906	5.1606	1	16780000			14155	1633	7961	7961	17972;17973	17972					0.07820799534761136
IEKLKERSS	9	Unmodified	_IEKLKERSS_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3168334960938	2	545.316763	1088.61897	0.66348	0.00036181	-0.25871	-0.00014108	0.40477	0.00022073	545.3164096121001	87.423	1.3929	87.51	86.728	88.121	0.08709					119	67	2	0	0	0	0.3208	1	23082	23082		5.7319	5.7319	1	201580			14156	1633	7961	7961	17974	17974					0.07820799534761136
IEKLKERSS	9	Unmodified	_IEKLKERSS_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.317138671875	2	545.316763	1088.61897	0.6091	0.00033216	-0.26726	-0.00014574	0.34184	0.00018641	545.3166247243353	80.334	3.1168	80.308	79.473	82.59	-0.026817					523	123	6	0	0	0	0.29638	3	20841	20841;21148;21274		9.3831	8.7454	1	17985000			14157	1633	7961	7961	17975;17976;17977	17975					0.07820799534761136
IEKLKERSS	9	Unmodified	_IEKLKERSS_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3169555664062	2	545.316763	1088.61897	0.80111	0.00043686	-0.38562	-0.00021028	0.41549	0.00022658	545.3163796569205	83.395	2.159	83.378	83.082	85.241	-0.016823					182	91	4	0	0	0	0.29638	1	21898	21898		9.3831	0.63772	1	1705100			14158	1633	7961	7961	17978	17978					0.07820799534761136
IEKLKERSS	9	Unmodified	_IEKLKERSS_					0	0	0		nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	nc|ENSG00000100815|Q15643-2|TRIP11	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	545.316763	1088.61897	0.71403	0.00038937	-0.35884	-0.00019568	0.35519	0.00019369	545.3164306350661	87.504	1.5704	87.498	86.67	88.241	-0.0056229	-0.085553	-6.6141E-05	NaN	9.3831	128	76	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220100			14159	1633	7961	7961							0.07820799534761136
IEKLWKRDE	9	Unmodified	_IEKLWKRDE_					0	0	0		AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247027247-247061635:-|nuORF	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.837646484375	2	608.837862	1215.66117	-0.013757	-8.376E-06	-0.033989	-2.0694E-05	-0.047747	-2.907E-05	608.8376537357569	105.7	0.97192	105.7	105.33	106.3	0					340	139	3	0	0	0	0.33508	1	28036	28036		3.5965	0.31518	1	931180			14160	22	7962	7962	17979	17979					0.061967749431460106
IEKLWKRDE	9	Unmodified	_IEKLWKRDE_					0	0	0		AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247027247-247061635:-|nuORF	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8372802734375	2	608.837862	1215.66117	0.18709	0.00011391	-0.29072	-0.000177	-0.10364	-6.3098E-05	608.8375189610648	105.7	1.0637	105.7	105.22	106.28	-0.0027847					373	153	3	0	0	0	0.33508	2	27928	27928;27954		3.5965	0.31518	1	963300			14161	22	7962	7962	17980;17981	17980					0.061967749431460106
IEKNIELF	8	Unmodified	_IEKNIELF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.784423828125	2	503.2844	1004.55425	0.1304	6.563E-05	-2.2848	-0.0011499	-2.1544	-0.0010843	503.7841201194982	81.788	0.6032	81.857	81.551	82.154	0.068993					43	26	2	0	0	0	0.39068	1	21326	21326		20.454	7.9221	1	245080			14162	3521	7963	7963	17982	17982					0.05215224728760859
IEKNIELF	8	Unmodified	_IEKNIELF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	503.2844	1004.55425	0.3693	0.00018586	-2.5544	-0.0012856	-2.1851	-0.0010998	503.78405184255126	81.994	0.5484	81.97	81.615	82.164	-0.02404	0.056741	-0.00013676	NaN	20.454	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238840			14163	3521	7963	7963							0.05215224728760859
IEKRIIKGF	9	Unmodified	_IEKRIIKGF_					0	0	0			REV__ENSG00000169567|ENST00000304043|HINT1	REV__ENSG00000169567|ENST00000304043|HINT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8060913085938	2	552.350409	1102.68626	0.57353	0.00031679	-0.59547	-0.00032891	-0.021938	-1.2117E-05	552.3500325190957	64.294	0.55886	64.284	63.936	64.495	-0.0095291					32	20	2	0	0	0	0.23783	1	16010	16010		18.135	10.846	1	226690	+		14164	17522	7964	7964	17983	17983					0.1390287453637029
IEKTSSLESAS	11	Unmodified	_IEKTSSLESAS_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.H1830Lfs*7|1|0.13|ENSG00000198589|chr4:150806300-150806300|T/-|frameshift_variant;LRBA|p.N1293Ifs*42|1|0.08|ENSG00000198589|chr4:150850850-150850851|-/ATGTTTATTATGGAAGATGTGTA|frameshift_variant;LRBA|p.L1532Ffs*9|1|0.05|ENSG00000198589|chr4:150831950-150831951|-/TAAAAAAAAAA|frameshift_variant	nc|ENSG00000198589|P50851-2|LRBA;LRBA|p.L1532Ffs*9|1|0.05|ENSG00000198589|chr4:150831950-150831951|-/TAAAAAAAAAA|frameshift_variant	nc|ENSG00000198589|P50851-2|LRBA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2938842773438	2	576.29315	1150.57175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.17	1	111.18	110.68	111.68	0.01152								0	0	0	0.36685	1	28969	28969		4.5289	0.93237	1				14165	8091;12502	7965	7965	17984	17984					0.002484754731085559
IELAGGLGAIF	11	Unmodified	_IELAGGLGAIF_					0	0	0		ENSG00000189108|ENST00000372582|IL1RAPL2	ENSG00000189108|ENST00000372582|IL1RAPL2	ENSG00000189108|ENST00000372582|IL1RAPL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3193359375	2	530.8055	1059.59645	0.72027	0.00038232	-1.3256	-0.00070363	-0.60532	-0.00032131	530.8052436646485	84.898	0.42772	84.898	84.746	85.174	0					27	16	2	0	0	0	0.30767	2	22273	22273;22319		21.537	5.3879	1	186480			14166	7802	7966	7966	17985;17986	17985					0.0690320013713972
IELLAACREEF	11	Unmodified	_IELLAACREEF_					0	0	0		nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	nc|ENSG00000196586|Q9UM54-5|MYO6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.3295288085938	2	647.329013	1292.64347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.89	1	85.975	85.475	86.475	0.084251								0	0	0	0.37382	1	22575	22575		2.9952	0.26005	1				14167	7883	7967	7967	17987	17987					0.008856916259674108
IELLCLFF	8	Unmodified	_IELLCLFF_					0	0	0		nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.259033203125	2	499.274989	996.535426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.529	1	56.51	56.01	57.01	-0.019081								0	0	0	0.33941	1	13572	13572		19.439	0	1				14168	2619	7968	7968	17988	17988					0.03701971833356765
IELPFKDIHLA	11	Unmodified	_IELPFKDIHLA_					0	0	0		nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.5957336425781	3	432.583451	1294.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.796	1	42.796	42.296	43.296	0								0	0	0	0.36995	1	9346	9346		3.8459	0.49018	1				14169	12621	7969	7969	17989	17989					0.09294805154081587
IELVTRGR	8	Unmodified	_IELVTRGR_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.275146484375	2	472.287808	942.561064	0.31406	0.00014833	-0.97585	-0.00046088	-0.66179	-0.00031256	472.2870496322931	84.954	1.922	84.954	84.584	86.506	0					155	74	3	0	0	0	0.46022	1	22760	22760		2.3027	0	1	9110500			14170	2777	7970	7970	17990	17990					0.0874858239999412
IELVTRGR	8	Unmodified	_IELVTRGR_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.275634765625	2	472.287808	942.561064	0.44252	0.000209	-0.9204	-0.00043469	-0.47788	-0.0002257	472.2871160681627	84.969	2.3886	84.956	84.516	86.904	-0.012833					207	93	4	0	0	0	0.46022	1	22755	22755		2.3027	0	1	10825000			14171	2777	7970	7970	17991	17991					0.0874858239999412
IELWHTTV	8	Unmodified	_IELWHTTV_					0	0	0			REV__nc|ENSG00000140553|Q9H3U1-3|UNC45A	REV__nc|ENSG00000140553|Q9H3U1-3|UNC45A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8036804199219	2	499.768917	997.523281	0.50709	0.00025343	-0.015276	-7.6343E-06	0.49182	0.00024579	499.7687601805169	45.255	0.86499	45.255	44.881	45.746	0					51	31	2	0	0	0	0.31934	1	10163	10163		18.135	0	1	574340	+		14172	16043	7971	7971	17992	17992					0.024420714145207967
IENEPHDV	8	Unmodified	_IENEPHDV_					0	0	0			REV__ENST00000504467.5_1_5:115348136-115357442:+|nuORF	REV__ENST00000504467.5_1_5:115348136-115357442:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.742431640625	2	476.722164	951.429775	0.21154	0.00010085	-0.91858	-0.00043791	-0.70704	-0.00033706	476.7215859621651	66.766	0.65167	66.766	66.396	67.048	0					39	22	3	0	0	0	0.34131	1	16628	16628		12.532	0	1	244770	+		14173	17745	7972	7972	17993	17993					-0.047882727585715656
IENEPHDV	8	Unmodified	_IENEPHDV_					0	0	0			REV__ENST00000504467.5_1_5:115348136-115357442:+|nuORF	REV__ENST00000504467.5_1_5:115348136-115357442:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	476.722164	951.429775	0.27149	0.00012942	-1.2554	-0.00059847	-0.9839	-0.00046905	476.7215814951071	66.572	0.69167	66.656	66.354	67.046	0.083832	-0.059665	-0.00013058	NaN	12.532	39	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316700	+		14174	17745	7972	7972							-0.047882727585715656
IENEPHDV	8	Unmodified	_IENEPHDV_					0	0	0			REV__ENST00000504467.5_1_5:115348136-115357442:+|nuORF	REV__ENST00000504467.5_1_5:115348136-115357442:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	476.722164	951.429775	0.12426	5.9235E-05	-1.0164	-0.00048453	-0.89213	-0.0004253	476.7215562663895	66.738	0.55213	66.725	66.46	67.012	-0.013588	0.0094755	9.7303E-05	NaN	12.532	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253400	+		14175	17745	7972	7972							-0.047882727585715656
IENNAPGIR	9	Unmodified	_IENNAPGIR_					0	0	0			REV__ENST00000606729.1_1_6:89790168-89790285:-|nuORF	REV__ENST00000606729.1_1_6:89790168-89790285:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.673828125	2	492.267073	982.519593	0.18039	8.88E-05	-2.0061	-0.00098752	-1.8257	-0.00089872	492.26637102778136	19.03	0.35013	18.912	18.734	19.084	-0.11739					19	12	2	0	0	0	0.25202	1	2072	2072		6.7232	0.51738	1	34225	+		14176	22663	7973	7973	17994	17994					0.02763401640675056
IEPHDYELY	9	Unmodified	_IEPHDYELY_					0	0	0			REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3214111328125	2	589.771854	1177.52915	0.44773	0.00026406	-0.12502	-7.3736E-05	0.32271	0.00019032	589.7718635072033	38.495	0.51904	38.592	38.348	38.867	0.09753					29	18	2	0	0	0	0.25526	1	8027	8027		4.3292	0	1	288020	+		14177	17695	7974	7974	17995	17995					-0.052508748644640946
IEPLFMVHLLF	11	Unmodified	_IEPLFMVHLLF_					0	0	0			REV__ENST00000414661.1_1_2:13143779-13143995:-|nuORF	REV__ENST00000414661.1_1_2:13143779-13143995:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.5893859863281	3	453.589548	1357.74682	0.43924	0.00019924	-0.32226	-0.00014617	0.11698	5.3063E-05	453.58934735820213	47.306	0.69744	47.306	46.961	47.658	0					70	24	4	0	0	0	0.40701	1	10764	10764		10.315	1.5635	1	1271700	+		14178	20801	7975	7975	17996	17996					0.08225223804447523
IEPLTLFH	8	Unmodified	_IEPLTLFH_					0	0	0		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2884826660156	2	485.273835	968.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.214	1	13.147	12.647	13.647	-0.067496								0	0	0	0.37664	1	357	357		2.5775	0	1				14179	6135	7976	7976	17997	17997					0.04759259419904538
IEPRKVQK	8	Unmodified	_IEPRKVQK_					0	0	0		ENSG00000198963|ENST00000376896|RORB;nc|ENSG00000198963|Q92753|RORB	ENSG00000198963|ENST00000376896|RORB	ENSG00000198963|ENST00000376896|RORB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.3115539550781	2	499.311284	996.608014	0.52794	0.00026361	0.0028358	1.4159E-06	0.53078	0.00026502	499.3111010803211	44.82	0.64344	44.895	44.615	45.258	0.07505					48	23	3	0	0	0	0.32886	1	9980	9980		21.747	9.2151	1	470330			14180	8176	7977	7977	17998	17998					0.1095744195114321
IEPVARQRRK	10	Unmodified	_IEPVARQRRK_					0	0	0			REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2579040527344	3	418.258072	1251.75239	0.19535	8.1708E-05	-0.67803	-0.00028359	-0.48268	-0.00020188	418.2577504111695	26.961	0.50208	26.95	26.711	27.213	-0.011562					43	17	3	0	0	0	0.38952	1	4520	4520		5.4027	0	1	240920	+		14181	15389	7978	7978	17999	17999					0.1365808343111894
IEQGINVCL	9	Unmodified	_IEQGINVCL_					0	0	0		ENSG00000125166|ENST00000245206|GOT2;nc|ENSG00000125166|P00505-2|GOT2	ENSG00000125166|ENST00000245206|GOT2	ENSG00000125166|ENST00000245206|GOT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2926940917969	2	494.760235	987.505917	0.25235	0.00012485	-0.51855	-0.00025656	-0.2662	-0.00013171	494.7601445543352	25.921	0.60716	25.899	25.691	26.298	-0.022236					26	21	2	0	0	0	0.2451	1	4267	4267		15.847	7.2539	1	180910			14182	3193	7979	7979	18000	18000					0.01166407817208892
IEQHMDFDSR	10	Unmodified	_IEQHMDFDSR_					0	0	0		nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000451399.5_1_6:43152048-43155921:+|nuORF;ENST00000515773.5_1_6:43152048-43164205:+|nuORF;CUL9|p.Y1115Lfs*53|1|0.17|ENSG00000112659|chr6:43200114-43200115|-/CTGAACAA|frameshift_variant	nc|ENSG00000112659|Q8IWT3-3|CUL9	nc|ENSG00000112659|Q8IWT3-3|CUL9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	639.2838134765625	2	639.282594	1276.55064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.878	1	89.877	89.377	90.377	-0.00080872								0	0	0	0.37807	1	23789	23789		2.9952	1.3426	1				14183	2449	7980	7980	18001	18001					-0.07657813107402944
IEQQRIKR	8	Unmodified	_IEQQRIKR_					0	0	0			REV__nc|ENSG00000134884|Q9NWB6-3|ARGLU1	REV__nc|ENSG00000134884|Q9NWB6-3|ARGLU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2921752929688	2	535.825089	1069.63563	0.4007	0.00021471	3.1633	0.001695	3.564	0.0019097	535.8269092900849	37.393	0.85023	37.481	37.218	38.068	0.08741					53	30	3	0	0	0	0.34131	1	7634	7634		12.532	0	1	506430	+		14184	15707	7981	7981	18002	18002					0.10359345211372784
IEQSLQFGFF	10	Unmodified	_IEQSLQFGFF_					0	0	0			REV__ENSG00000160505|ENST00000301295|NLRP4	REV__ENSG00000160505|ENST00000301295|NLRP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.88995361328125	3	405.873001	1214.59717	-0.12712	-5.1594E-05	-0.3806	-0.00015448	-0.50772	-0.00020607	406.20725915919456	43.132	1.1561	43.216	42.71	43.866	0.083992					69	42	3	0	0	0	0.31651	1	9472	9472		7.9454	0.46833	1	345280	+		14185	16905	7982	7982	18003	18003					-0.0015400521381252474
IERKYIGFR	9	Unmodified	_IERKYIGFR_					0	0	0			REV__ENST00000334082.10_1_5:78808747-78808858:-|nuORF	REV__ENST00000334082.10_1_5:78808747-78808858:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.3069458007812	2	591.343115	1180.67168	0.12251	7.2443E-05	-0.055357	-3.2735E-05	0.06715	3.9708E-05	591.8445960151777	34.221	0.34118	34.288	34.153	34.495	0.066704					24	11	3	0	0	0	0.25706	1	6694	6694		6.7232	0.99131	1	187810	+		14186	20057	7983	7983	18004	18004					0.08856802388208962
IERYQRLYTWT	11	Unmodified	_IERYQRLYTWT_					0	0	0		ENSG00000174945|ENST00000683327|AMZ1	ENSG00000174945|ENST00000683327|AMZ1	ENSG00000174945|ENST00000683327|AMZ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.787841796875	3	510.268414	1527.78341	0.40773	0.00020805	-0.21713	-0.0001108	0.19059	9.7254E-05	510.2683393211004	54.132	0.38946	54.116	53.893	54.282	-0.015923					25	13	3	0	0	0	0.3322	1	12876	12876		2.6312	0	1	207120			14187	6830	7984	7984	18005	18005					0.040631919546967765
IESMEGCNKHE	11	Unmodified	_IESMEGCNKHE_					0	0	0			REV__TLN2|p.I2353Mfs*42|1|0.13|ENSG00000171914|chr15:62833559-62833559|T/-|frameshift_variant	REV__TLN2|p.I2353Mfs*42|1|0.13|ENSG00000171914|chr15:62833559-62833559|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.77490234375	3	426.1814	1275.52237	-0.018657	-7.9512E-06	-1.3928	-0.00059358	-1.4115	-0.00060153	426.1808697278809	33.15	1.3228	33.205	32.758	34.081	0.055309					74	47	3	0	0	0	0.33236	1	6520	6520		2.4348	0.18206	1	307580	+		14188	17677	7985	7985	18006	18006					-0.10436879078974926
IESMEGCNKHE	11	Unmodified	_IESMEGCNKHE_					0	0	0			REV__TLN2|p.I2353Mfs*42|1|0.13|ENSG00000171914|chr15:62833559-62833559|T/-|frameshift_variant	REV__TLN2|p.I2353Mfs*42|1|0.13|ENSG00000171914|chr15:62833559-62833559|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	426.1814	1275.52237	-0.1492	-6.3586E-05	-1.5137	-0.00064511	-1.6629	-0.0007087	426.1808842097603	33.257	0.69907	33.257	32.865	33.564	0	0.042432	-0.00011643	NaN	2.4348	50	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271570	+		14189	17677	7985	7985							-0.10436879078974926
IESMEGCNKHE	11	Unmodified	_IESMEGCNKHE_					0	0	0			REV__TLN2|p.I2353Mfs*42|1|0.13|ENSG00000171914|chr15:62833559-62833559|T/-|frameshift_variant	REV__TLN2|p.I2353Mfs*42|1|0.13|ENSG00000171914|chr15:62833559-62833559|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	426.1814	1275.52237	-0.14139	-6.0259E-05	-1.4027	-0.00059779	-1.5441	-0.00065805	426.1808815737402	33.127	0.6332	33.181	32.85	33.483	0.054375	-0.033315	2.5526E-05	NaN	2.4348	50	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354730	+		14190	17677	7985	7985							-0.10436879078974926
IESRFPKLDL	10	Unmodified	_IESRFPKLDL_					0	0	0			REV__ENST00000367545.7_1_6:144844224-144844278:+|nuORF	REV__ENST00000367545.7_1_6:144844224-144844278:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.2178649902344	3	406.567801	1216.68157	-0.099806	-4.0578E-05	-0.61009	-0.00024804	-0.70989	-0.00028862	406.5674919760339	43.463	0.48007	43.463	43.233	43.713	0					28	17	2	0	0	0	0.30093	1	9536	9536		14.218	2.0434	1	491170	+		14191	20315	7986	7986	18007	18007					0.0818994560295323
IESTKQTSV	9	Unmodified	_IESTKQTSV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7676086425781	2	496.766571	991.51859	0.096721	4.8048E-05	1.2924	0.00064203	1.3891	0.00069008	496.76726558395	18.971	0.60292	18.913	18.539	19.142	-0.058174					34	20	3	0	0	0	0.31417	1	2090	2090		6.7232	0.51738	1	88340	+		14192	16705;23038	7987	7987	18008	18008					0.02249142481105082
IETAGRTPK	9	Unmodified	_IETAGRTPK_					0	0	0		nc|ENSG00000130592|P33241-2|LSP1;ENST00000485341.5_1_11:1902588-1908790:+|nuORF;ENSG00000130592|ENST00000311604|LSP1;nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-2|LSP1	nc|ENSG00000130592|P33241-2|LSP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2921447753906	2	486.777274	971.539994	0.2485	0.00012096	-0.26105	-0.00012707	-0.012549	-6.1088E-06	486.7770968484384	43.111	0.54654	43.111	42.816	43.362	0					32	19	2	0	0	0	0.2322	1	9516	9516		14.838	3.198	1	292790			14193	3490	7988	7988	18009	18009					0.05308572300475589
IETAQELWV	9	Unmodified	_IETAQELWV_					0	0	0			REV__ENSG00000240694|ENST00000522362|PNMA2	REV__ENSG00000240694|ENST00000522362|PNMA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3279418945312	2	544.784764	1087.55498	0.47052	0.00025633	1.4493	0.00078957	1.9199	0.0010459	544.7856054768597	33.839	0.46985	33.906	33.657	34.127	0.066704					27	16	2	0	0	0	0.25202	1	6661	6661		10.824	2.2306	1	190560	+		14194	19172	7989	7989	18010	18010					0.014700193778026005
IETFDVNEF	9	Unmodified	_IETFDVNEF_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3131713867188	2	557.258579	1112.50261	0.7176	0.00039989	0.46839	0.00026102	1.186	0.0006609	557.7583501532679	55.948	0.11208	55.929	55.853	55.965	-0.019081					5	3	2	0	0	0	0.22596	1	13396	13396		15.847	0	1	77680			14195	3203	7990	7990	18011	18011					-0.049145637558240196
IEVTFSRIR	9	Unmodified	_IEVTFSRIR_					0	0	0		nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-3|KMO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8035888671875	2	560.827298	1119.64004	0.46574	0.0002612	-1.4212	-0.00079705	-0.95546	-0.00053585	560.8266576195025	43.467	0.7645	43.545	43.155	43.92	0.077515					59	27	3	0	0	0	0.20881	1	9541	9541		16.149	3.1066	1	645060			14196	12671	7991	7991	18012	18012					0.08500809634256257
IEWHHLNFRWP	11	Unmodified	_IEWHHLNFRWP_					0	0	0			REV__ENST00000263269.3_1_19:48917790-48922905:+|nuORF	REV__ENST00000263269.3_1_19:48917790-48922905:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2617797851562	3	512.261594	1533.76295	0.22294	0.0001142	-0.28515	-0.00014607	-0.062213	-3.1869E-05	512.2615581715394	26.282	0.89822	26.259	25.802	26.7	-0.022238					70	31	4	0	0	0	0.47633	1	4233	4233		1.2148	0	1	164130	+		14197	19617	7992	7992	18013	18013					0.017420660855577808
IEWVMKKR	8	Unmodified	_IEWVMKKR_					0	0	0			REV__nc|ENSG00000163904|Q9HC62-2|SENP2	REV__nc|ENSG00000163904|Q9HC62-2|SENP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.31640625	2	545.315512	1088.61647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.45	1	118.43	117.93	118.93	-0.024147								0	0	0	0.37664	1	30617	30617		2.5775	0.27475	1		+		14198	17102	7993	7993	18014	18014					0.07570672596102668
IEYLEPTI	8	Unmodified	_IEYLEPTI_					0	0	0			REV__ENSG00000108239|ENST00000225235|TBC1D12	REV__ENSG00000108239|ENST00000225235|TBC1D12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.262939453125	2	489.263133	976.511714	-0.022995	-1.125E-05	0.62802	0.00030727	0.60503	0.00029602	489.2633449558929	13.177	0.88099	13.078	12.611	13.492	-0.099291					51	30	3	0	0	0	0.34247	1	322	322		8.5933	0.68312	1	307280	+		14199	14585	7994	7994	18015	18015					0.02251829600527344
IEYMQQNLV	9	Unmodified	_IEYMQQNLV_					0	0	0		nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8190307617188	2	569.284074	1136.5536	0.17865	0.0001017	0.50804	0.00028922	0.68669	0.00039092	569.2839775187709	45.891	0.41647	45.95	45.763	46.18	0.059837					28	14	3	0	0	0	0.25323	1	10251	10251		6.2058	0	1	319580			14200	2781	7995	7995	18016	18016					-0.009219379826163276
IEYPIISLE	9	Unmodified	_IEYPIISLE_					0	0	0			REV__ENST00000451871.1_1_13:42499863-42500601:+|nuORF	REV__ENST00000451871.1_1_13:42499863-42500601:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2958984375	2	538.79734	1075.58013	0.5428	0.00029246	-0.84421	-0.00045486	-0.30141	-0.0001624	538.7967054522185	65.897	2.0558	65.886	65.372	67.428	-0.011337					102	73	2	0	0	0	0.2451	1	16868	16868		10.824	10.824	1	319940	+		14201	13664	7996	7996	18017	18017					0.04536074180373362
IFADMQGFTF	10	Oxidation (M)	_IFADM(Oxidation (M))QGFTF_		IFADM(1)QGFTF		IFADM(160)QGFTF	0	0	1		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.7709350585938	2	596.7708	1191.52705	0.23001	0.00013727	0.19375	0.00011562	0.42376	0.00025289	596.7708053248391	75.696	1.6959	75.696	75.315	77.011	0					144	61	4	0	0	0	1.5864E-08	4	19444	19444;19488;19540;19598		160.69	112.94	1	3241800			14202	6397	7997	7997	18018;18019;18020;18021	18018		749			-0.06105626873932124
IFADMQGFTF	10	Oxidation (M)	_IFADM(Oxidation (M))QGFTF_		IFADM(1)QGFTF		IFADM(150)QGFTF	0	0	1		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.7709350585938	2	596.7708	1191.52705	0.46985	0.00028039	-0.020484	-1.2224E-05	0.44937	0.00026817	596.7706665539538	75.655	0.87364	75.707	75.375	76.249	0.052361					106	31	5	0	0	0	1.3922E-05	4	19443	19399;19443;19494;19547		148.27	106.43	1	3586800			14203	6397	7997	7997	18022;18023;18024;18025	18023		749			-0.06105626873932124
IFADMQGFTF	10	Oxidation (M)	_IFADM(Oxidation (M))QGFTF_		IFADM(1)QGFTF		IFADM(62)QGFTF	0	0	1		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.7703247070312	2	596.7708	1191.52705	0.34701	0.00020708	0.45697	0.00027271	0.80398	0.00047979	596.7706203856347	76.225	1.0665	76.278	76.189	77.256	0.053413					70	37	3	0	0	0	0.038178	1	19597	19597		61.602	37.581	1	319900			14204	6397	7997	7997	18026	18026		749			-0.06105626873932124
IFADMQGFTF	10	Oxidation (M)	_IFADM(Oxidation (M))QGFTF_		IFADM(1)QGFTF		IFADM(150)QGFTF	0	0	1		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.7711181640625	2	596.7708	1191.52705	0.44415	0.00026506	-0.079783	-4.7612E-05	0.36437	0.00021745	596.7706502775488	75.728	1.575	75.696	75.416	76.991	-0.031487					143	57	5	0	0	0	1.3922E-05	4	19430	19430;19478;19528;19585		148.27	102.53	1	3737600			14205	6397	7997	7997	18027;18028;18029;18030	18027		749			-0.06105626873932124
IFAFGTSG	8	Unmodified	_IFAFGTSG_					0	0	0			REV__ENST00000467118.1_1_22:39064011-39066786:+|nuORF	REV__ENST00000467118.1_1_22:39064011-39066786:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	400.20281982421875	2	400.202879	798.391205	0.027752	1.1106E-05	0.42579	0.0001704	0.45354	0.00018151	400.2030176923507	91.118	0.55379	91.118	90.927	91.481	0.00046539					54	36	2	0	0	0	0.45942	2	24174	24174;24219		2.5775	0	1	479380	+		14206	21295	7998	7998	18031;18032	18031					-0.01605533602412379
IFAFSGQTL	9	Unmodified	_IFAFSGQTL_					0	0	0			REV__ENSG00000140093|ENST00000261994|SERPINA10	REV__ENSG00000140093|ENST00000261994|SERPINA10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.8193664550781	2	492.263468	982.512382	0.42164	0.00020756	0.094911	4.6721E-05	0.51655	0.00025428	492.26350403515266	52.399	0.51247	52.449	52.228	52.74	0.050575					29	18	2	0	0	0	0.24311	1	12265	12265		3.9444	0	1	506450	+		14207	16021	7999	7999	18033	18033					0.020426690402587155
IFAKQAPK	8	Unmodified	_IFAKQAPK_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.22320556640625	2	451.776545	901.538538	0.24222	0.00010943	-0.4192	-0.00018939	-0.17698	-7.9955E-05	451.77625742800495	43.355	0.44086	43.439	43.217	43.657	0.083996					23	15	2	0	0	0	0.34092	1	9497	9497		13.508	8.2772	1	190880	+		14208	14116	8000	8000	18034	18034					0.08382983002377387
IFAKQAPK	8	Unmodified	_IFAKQAPK_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	451.776545	901.538538	0.15434	6.9729E-05	-0.72839	-0.00032907	-0.57405	-0.00025934	451.77618845209514	43.569	0.35249	43.569	43.388	43.741	0	0.079606	-9.8853E-05	NaN	13.508	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133420	+		14209	14116	8000	8000							0.08382983002377387
IFAKQAPK	8	Unmodified	_IFAKQAPK_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	451.776545	901.538538	0.32901	0.00014864	-0.63917	-0.00028876	-0.31016	-0.00014012	451.7761743318573	43.382	0.33524	43.46	43.291	43.626	0.077518	-0.029325	-1.8233E-05	NaN	13.508	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167130	+		14210	14116	8000	8000							0.08382983002377387
IFAMCLFR	8	Unmodified	_IFAMCLFR_					0	0	0		ENSG00000157570|ENST00000520358|TSPAN18	ENSG00000157570|ENST00000520358|TSPAN18	ENSG00000157570|ENST00000520358|TSPAN18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8240966796875	2	500.758984	999.503414	-0.033154	-1.6602E-05	-1.1234	-0.00056253	-1.1565	-0.00057913	500.75775685641963	28.179	0.14161	28.179	28.065	28.207	0					6	4	2	0	0	0	0.34218	1	4870	4870		9.3474	2.9933	1	26731			14211	5316	8001	8001	18035	18035					0.0036428087855711055
IFAMCLFR	8	Unmodified	_IFAMCLFR_					0	0	0		ENSG00000157570|ENST00000520358|TSPAN18	ENSG00000157570|ENST00000520358|TSPAN18	ENSG00000157570|ENST00000520358|TSPAN18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8238830566406	2	500.758984	999.503414	-0.012004	-6.0109E-06	-0.067541	-3.3822E-05	-0.079544	-3.9833E-05	501.26090610242784	28.227	0.13765	28.228	28.13	28.268	0.00046921					6	4	2	0	0	0	0.32778	1	4889	4889		20.871	12.278	1	81278			14212	5316	8001	8001	18036	18036					0.0036428087855711055
IFASIAGLEF	10	Unmodified	_IFASIAGLEF_					0	0	0		ENSG00000139370|ENST00000266771|SLC15A4;nc|ENSG00000139370|Q8N697-2|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2924194335938	2	534.292225	1066.5699	0.56443	0.00030157	0.050785	2.7134E-05	0.61522	0.00032871	534.2919302072651	89.782	0.82111	89.782	89.46	90.281	0					149	66	3	0	0	0	0.095303	1	23764	23764		71.922	44.293	1	448730			14213	4233	8002	8002	18037	18037					0.039275112458199146
IFASIAGLEF	10	Unmodified	_IFASIAGLEF_					0	0	0		ENSG00000139370|ENST00000266771|SLC15A4;nc|ENSG00000139370|Q8N697-2|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2923583984375	2	534.292225	1066.5699	0.39016	0.00020846	0.15339	8.1955E-05	0.54355	0.00029042	534.2919386940899	89.657	1.5893	89.747	89.306	90.895	0.090561					221	120	3	0	0	0	0.095303	1	23719	23719		71.922	44.293	1	661070			14214	4233	8002	8002	18038	18038					0.039275112458199146
IFASIAGLEF	10	Unmodified	_IFASIAGLEF_					0	0	0		ENSG00000139370|ENST00000266771|SLC15A4;nc|ENSG00000139370|Q8N697-2|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	ENSG00000139370|ENST00000266771|SLC15A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2922973632812	2	534.292225	1066.5699	0.57743	0.00030852	-0.095575	-5.1065E-05	0.48185	0.00025745	534.2918146024774	89.782	1.603	89.781	89.267	90.87	-0.00080872					225	124	3	0	0	0	0.00021882	4	23783	23706;23745;23783;23898		131.27	75.091	1	725840			14215	4233	8002	8002	18039;18040;18041;18042	18041					0.039275112458199146
IFATYPAPYL	10	Unmodified	_IFATYPAPYL_					0	0	0		ENSG00000103569|ENST00000219919|AQP9;nc|ENSG00000143595|Q96PS8-2|AQP10;ENSG00000143595|ENST00000324978|AQP10	ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3079833984375	2	578.307875	1154.6012	0.60012	0.00034706	-0.098407	-5.6909E-05	0.50172	0.00029015	578.3077222311194	77.568	0.99439	77.568	77.282	78.276	0					119	36	4	0	0	0	1.2924E-13	4	20036	19992;20036;20080;20132		187.93	157.7	1	3548400			14216	1845	8003	8003	18043;18044;18045;18046	18044					0.030080842799179663
IFATYPAPYL	10	Unmodified	_IFATYPAPYL_					0	0	0		ENSG00000103569|ENST00000219919|AQP9;nc|ENSG00000143595|Q96PS8-2|AQP10;ENSG00000143595|ENST00000324978|AQP10	ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3080444335938	2	578.307875	1154.6012	0.6665	0.00038544	-0.21922	-0.00012678	0.44728	0.00025867	578.3076506941413	77.524	0.90987	77.58	77.314	78.223	0.055412					109	32	4	0	0	0	1.4019E-08	4	20017	19971;20017;20069;20150		162.95	132.73	1	3104900			14217	1845	8003	8003	18047;18048;18049;18050	18048					0.030080842799179663
IFATYPAPYL	10	Unmodified	_IFATYPAPYL_					0	0	0		ENSG00000103569|ENST00000219919|AQP9;nc|ENSG00000143595|Q96PS8-2|AQP10;ENSG00000143595|ENST00000324978|AQP10	ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3079223632812	2	578.307875	1154.6012	0.73361	0.00042425	-0.24109	-0.00013942	0.49252	0.00028483	578.3076327711511	77.64	0.98522	77.609	77.262	78.247	-0.031334					117	35	5	0	0	0	1.4019E-08	4	20038	19991;20038;20089;20150		162.95	132.73	1	3749600			14218	1845	8003	8003	18051;18052;18053;18054	18052					0.030080842799179663
IFDFHSGALM	10	Unmodified	_IFDFHSGALM_					0	0	0			REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.27490234375	2	569.273509	1136.53247	0.20339	0.00011578	2.3167	0.0013189	2.5201	0.0014346	569.2755281402033	30.941	1.2019	30.969	30.693	31.895	0.027946					183	42	7	0	0	0	0.20278	1	5855	5855		32.305	3.2239	1	19365000	+		14219	14967	8004	8004	18055	18055					-0.03033903291475326
IFDFHSGALM	10	Unmodified	_IFDFHSGALM_					0	0	0			REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.2752685546875	2	569.273509	1136.53247	0.12749	7.2575E-05	2.392	0.0013617	2.5195	0.0014343	569.275557730128	30.871	2.0445	30.898	30.638	32.683	0.027157					200	73	6	0	0	0	0.20278	1	5843	5843		32.305	3.2239	1	21975000	+		14220	14967	8004	8004	18056	18056					-0.03033903291475326
IFDFHSGALM	10	Unmodified	_IFDFHSGALM_					0	0	0			REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	REV__nc|ENSG00000117425|Q9Y6C5-2|PTCH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.8461303710938	2	569.273509	1136.53247	0.21695	0.0001235	1.9838	0.0011293	2.2007	0.0012528	569.2745811279542	32.687	0.77477	32.741	32.682	33.457	0.054375					40	27	2	0	0	0	0.31629	1	6270	6270		10.074	0.6908	1	117760	+		14221	14967	8004	8004	18057	18057					-0.03033903291475326
IFDGSDDEEES	11	Unmodified	_IFDGSDDEEES_					0	0	0		ENSG00000083937|ENST00000263780|CHMP2B;ENST00000466696.1_1_3:87302513-87302969:+|nuORF;nc|ENSG00000083937|Q9UQN3-2|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	ENSG00000083937|ENST00000263780|CHMP2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3092651367188	2	621.735862	1241.45717	-0.17689	-0.00010998	-0.76186	-0.00047368	-0.93875	-0.00058366	621.7352850591901	65.134	0.37595	65.123	64.972	65.348	-0.011337					14	11	2	0	0	0	0.33238	1	16195	16195		3.2813	1.4371	1	150130			14222	1236	8005	8005	18058	18058					-0.1538987879951037
IFDHLKLLKL	10	Unmodified	_IFDHLKLLKL_					0	0	0		ENST00000471694.1_1_3:107764569-107764836:-|nuORF	ENST00000471694.1_1_3:107764569-107764836:-|nuORF	ENST00000471694.1_1_3:107764569-107764836:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8408203125	2	620.394816	1238.77508	-0.070917	-4.3996E-05	1.3034	0.00080863	1.2325	0.00076463	620.3955353320455	39.563	0.1901	39.563	39.43	39.62	0					9	6	2	0	0	0	0.32165	1	8359	8359		1.6526	1.302	1	66606			14223	10879	8006	8006	18059	18059					0.16524289776043588
IFDIRKPSA	9	Unmodified	_IFDIRKPSA_					0	0	0			REV__ENSG00000187866|ENST00000394264|PABIR1	REV__ENSG00000187866|ENST00000394264|PABIR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.821533203125	2	523.803291	1045.59203	0.63272	0.00033142	0.6357	0.00033298	1.2684	0.0006644	523.803412220702	51.141	0.64756	51.151	50.913	51.561	0.0095634					56	24	3	0	0	0	0.16283	1	12027	12027		29.082	6.3453	1	563620	+		14224	18529	8007	8007	18060	18060					0.07105735714230832
IFDIRKPSA	9	Unmodified	_IFDIRKPSA_					0	0	0			REV__ENSG00000187866|ENST00000394264|PABIR1	REV__ENSG00000187866|ENST00000394264|PABIR1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	523.803291	1045.59203	0.71263	0.00037328	0.27678	0.00014498	0.98941	0.00051825	523.8033297208218	51.092	0.61064	51.092	50.846	51.456	0	-0.033832	-8.9448E-05	NaN	29.082	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517390	+		14225	18529	8007	8007							0.07105735714230832
IFDIRKPSA	9	Unmodified	_IFDIRKPSA_					0	0	0			REV__ENSG00000187866|ENST00000394264|PABIR1	REV__ENSG00000187866|ENST00000394264|PABIR1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	523.803291	1045.59203	0.54611	0.00028606	0.28663	0.00015014	0.83274	0.00043619	523.8034252647224	51.087	0.57922	51.134	50.9	51.479	0.046574	0.0084562	-7.9131E-05	NaN	29.082	38	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	556470	+		14226	18529	8007	8007							0.07105735714230832
IFDIRKPSA	9	Unmodified	_IFDIRKPSA_					0	0	0			REV__ENSG00000187866|ENST00000394264|PABIR1	REV__ENSG00000187866|ENST00000394264|PABIR1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	523.803291	1045.59203	0.63272	0.00033142	0.6357	0.00033298	1.2684	0.0006644	523.803412220702	51.141	0.64756	51.151	50.913	51.561	0.0095634	0.025376	0.00028656	NaN	29.082	56	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	563620	+		14227	18529	8007	8007							0.07105735714230832
IFEDVKELT	9	Unmodified	_IFEDVKELT_					0	0	0		ENSG00000135423|ENST00000311966|GLS2;ENST00000494345.5_1_12:56869710-56882067:-|nuORF	ENSG00000135423|ENST00000311966|GLS2	ENSG00000135423|ENST00000311966|GLS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.779541015625	2	547.292422	1092.57029	0.53158	0.00029093	1.0177	0.00055698	1.5493	0.00084791	547.2920794888466	80.196	0.89912	80.17	79.698	80.597	-0.026825					68	31	3	0	0	0	0.26612	1	20895	20895		13.906	0.86358	1	201200			14228	3872	8008	8008	18061	18061					0.0277088617501704
IFEPKQVF	8	Unmodified	_IFEPKQVF_					0	0	0			REV__ENSG00000196967|ENST00000292841|ZNF585A;REV__ENSG00000245680|ENST00000532828|ZNF585B	REV__ENSG00000196967|ENST00000292841|ZNF585A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.27972412109375	2	504.28166	1006.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.008	1	92.008	91.508	92.508	0								0	0	0	0.34752	1	24454	24454		15.768	4.1279	1		+		14229	18701;19207	8009	8009	18062	18062					0.045755459369502205
IFERWYIN	8	Unmodified	_IFERWYIN_					0	0	0			REV__ENSG00000181562|ENST00000326842|EDDM3A	REV__ENSG00000181562|ENST00000326842|EDDM3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3092041015625	2	570.795466	1139.57638	0.26384	0.0001506	0.21012	0.00011994	0.47397	0.00027054	570.7956198436701	70.264	0.74506	70.264	70.023	70.768	0					57	26	3	0	0	0	0.3366	1	17943	17943		18.135	0	1	419840	+		14230	18155	8010	8010	18063	18063					0.012174491971791213
IFFCRNNGYAI	11	Unmodified	_IFFCRNNGYAI_					0	0	0		ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA	ENSG00000248098|ENST00000269980|BCKDHA	ENSG00000248098|ENST00000269980|BCKDHA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.88482666015625	3	439.885135	1316.63358	-0.13801	-6.0709E-05	-1.3361	-0.00058771	-1.4741	-0.00064842	439.8849057634592	28.387	0.72308	28.387	28.094	28.817	0					73	24	5	0	0	0	0.40701	1	4971	4971		10.315	3.2781	1	779020			14231	8578	8011	8011	18064	18064					-0.012074515887434245
IFFENHPYF	9	Unmodified	_IFFENHPYF_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.2874755859375	2	607.287474	1212.5604	0.59818	0.00036327	-0.2353	-0.00014289	0.36288	0.00022038	607.2871256187315	66.263	1.3786	66.263	65.871	67.25	0					115	48	4	0	0	0	0.052657	1	16597	16597		92.653	61.385	1	1511500			14232	5317	8012	8012	18065	18065					-0.03738257039731252
IFFENHPYF	9	Unmodified	_IFFENHPYF_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.287353515625	2	607.287474	1212.5604	0.61412	0.00037295	-0.24601	-0.0001494	0.36811	0.00022355	607.2871065443079	66.12	1.7751	66.204	65.806	67.582	0.083832					121	63	4	0	0	0	0.0085994	1	16546	16546		114.65	89.25	1	1619800			14233	5317	8012	8012	18066	18066					-0.03738257039731252
IFFENHPYF	9	Unmodified	_IFFENHPYF_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.2875366210938	2	607.287474	1212.5604	0.31956	0.00019406	0.06968	4.2316E-05	0.38924	0.00023638	607.2872960152386	66.271	1.7679	66.258	65.797	67.565	-0.013588					144	62	4	0	0	0	0.0013683	3	16580	16532;16580;16630		118.07	86.8	1	1869000			14234	5317	8012	8012	18067;18068;18069	18068					-0.03738257039731252
IFFMYAKP	8	Unmodified	_IFFMYAKP_					0	0	0		ENSG00000204246|ENST00000641090|OR13C3;ENSG00000148136|ENST00000277216|OR13C4;ENSG00000186943|ENST00000335040|OR13C8;nc|ENSG00000204246|Q8NGS6|OR13C3	ENSG00000204246|ENST00000641090|OR13C3	ENSG00000204246|ENST00000641090|OR13C3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.30401611328125	2	508.767332	1015.52011	-0.043364	-2.2062E-05	-2.6927	-0.0013699	-2.736	-0.001392	509.268844378643	12.977	0.25642	12.877	12.785	13.042	-0.099291					10	8	2	0	0	0	0.344	1	301	301		2.5775	0.51773	1	6066.4			14235	4791	8013	8013	18070	18070					0.012971050361443304
IFFPLMYL	8	Unmodified	_IFFPLMYL_					0	0	0			REV__F2RL2|p.L344Ffs*5|1|0.03|ENSG00000164220|chr5:76617678-76617679|-/C|frameshift_variant	REV__F2RL2|p.L344Ffs*5|1|0.03|ENSG00000164220|chr5:76617678-76617679|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8138427734375	2	522.285357	1042.55616	0.62493	0.00032639	0.41924	0.00021897	1.0442	0.00054535	522.2852854001992	37.88	0.36043	37.88	37.646	38.007	0					16	12	2	0	0	0	0.31651	1	7832	7832		24.21	0	1	148450	+		14236	17139	8014	8014	18071	18071					0.03658562213013283
IFFVFFVLL	9	Unmodified	_IFFVFFVLL_					0	0	0		nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-7|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;ENSG00000078795|ENST00000508883|PKD2L2	nc|ENSG00000078795|Q9NZM6-2|PKD2L2	nc|ENSG00000078795|Q9NZM6-2|PKD2L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.8432006835938	2	572.843897	1143.67324	0.16764	9.6031E-05	-1.0643	-0.00060969	-0.89669	-0.00051366	572.8431286298573	18.528	0.49454	18.411	18.184	18.678	-0.11739					27	16	2	0	0	0	0.34374	1	1973	1973		2.3027	0.4585	1	62548			14237	1117	8015	8015	18072	18072					0.10715043424283976
IFFVFFVLL	9	Unmodified	_IFFVFFVLL_					0	0	0		nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-7|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;ENSG00000078795|ENST00000508883|PKD2L2	nc|ENSG00000078795|Q9NZM6-2|PKD2L2	nc|ENSG00000078795|Q9NZM6-2|PKD2L2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	572.843897	1143.67324	0.09268	5.3091E-05	-0.81035	-0.0004642	-0.71767	-0.00041111	572.8434388252448	18.325	0.48721	18.325	18.127	18.614	0	-0.069486	0.00012251	NaN	2.3027	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68353			14238	1117	8015	8015							0.10715043424283976
IFGFIFLTL	9	Unmodified	_IFGFIFLTL_					0	0	0		ENSG00000071991|ENST00000262150|CDH19	ENSG00000071991|ENST00000262150|CDH19	ENSG00000071991|ENST00000262150|CDH19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2777099609375	2	535.817879	1069.6212	0.26621	0.00014264	-2.1947	-0.001176	-1.9285	-0.0010333	535.8170034004636	41.055	0.48068	41.055	40.875	41.355	0					36	17	3	0	0	0	0.24739	1	8761	8761		13.508	0	1	289900			14239	966	8016	8016	18073	18073					0.08917880010494628
IFGIFPNQF	9	Unmodified	_IFGIFPNQF_					0	0	0		ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000104043|ENST00000284509|ATP8B4	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7876586914062	2	541.78711	1081.55967	0.54643	0.00029605	0.45402	0.00024598	1.0005	0.00054203	541.7870495770906	89.899	0.44171	89.899	89.698	90.14	0					70	38	3	0	0	0	0.24311	1	23798	23798		16.942	9.0321	1	90875			14240	1861	8017	8017	18074	18074					0.02214948311234366
IFGIFPNQF	9	Unmodified	_IFGIFPNQF_					0	0	0		ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000104043|ENST00000284509|ATP8B4	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7871704101562	2	541.78711	1081.55967	0.57501	0.00031153	0.036329	1.9683E-05	0.61134	0.00033122	541.7870794308889	89.78	0.42825	89.87	89.648	90.076	0.090561					56	33	3	0	0	0	0.21303	1	23813	23813		21.747	4.8044	1	149480			14241	1861	8017	8017	18075	18075					0.02214948311234366
IFGIFPNQF	9	Unmodified	_IFGIFPNQF_					0	0	0		ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000104043|ENST00000284509|ATP8B4	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7885131835938	2	541.78711	1081.55967	0.67335	0.00036481	-0.56724	-0.00030733	0.1061	5.7485E-05	541.7868342834939	89.929	0.41251	89.929	89.683	90.095	0.0003891					59	36	2	0	0	0	0.072844	4	23785	23767;23785;23816;23837		44.407	23.569	1	136580			14242	1861	8017	8017	18076;18077;18078;18079	18077					0.02214948311234366
IFGTTGDPLLR	11	Unmodified	_IFGTTGDPLLR_					0	0	0			REV__nc|ENSG00000249948|Q9H227-2|GBA3	REV__nc|ENSG00000249948|Q9H227-2|GBA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.3067016601562	2	595.332413	1188.65027	0.55462	0.00033018	2.1833	0.0012998	2.7379	0.00163	595.3330906221134	88.626	0.70679	88.715	88.414	89.121	0.089195					39	29	2	0	0	0	0.32951	1	23392	23392		8.7454	0	1	120870	+		14243	23216	8018	8018	18080	18080					0.06349372568843137
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.789306640625	2	512.789318	1023.56408	0.28337	0.00014531	0.026875	1.3781E-05	0.31025	0.00015909	512.7892058922239	91.881	1.7058	91.881	91.564	93.27	0					247	128	3	0	0	0	2.3185E-05	3	24397	24357;24397;24443		153.26	67.141	1	1210600			14244	1468;3087;4931	8019	8019	18081;18082;18083	18082					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.9854125976562	2	512.789318	1023.56408	0.18111	9.2871E-05	-0.37787	-0.00019377	-0.19676	-0.0001009	513.2904327370444	94.018	0.36891	94.018	93.808	94.177	0					30	25	2	0	0	0	0.24913	1	25013	25013		12.532	4.6214	1	33739			14245	1468;3087;4931	8019	8019	18084	18084					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.268310546875	2	512.789318	1023.56408	0.19782	0.00010144	-0.26635	-0.00013658	-0.068532	-3.5142E-05	512.7891219363522	93.668	0.17354	93.668	93.626	93.8	0					22	13	2	0	0	0	0.24913	1	24985	24985		12.532	4.6214	1	59735			14246	1468;3087;4931	8019	8019	18085	18085					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.9855346679688	2	512.789318	1023.56408	0.20497	0.00010511	0.30999	0.00015896	0.51496	0.00026407	513.2910491042074	93.572	0.12817	93.572	93.488	93.616	0					19	13	2	0	0	0	0.25526	1	24931	24931		7.9102	3.1541	1	93190			14247	1468;3087;4931	8019	8019	18086	18086					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7893676757812	2	512.789318	1023.56408	0.25288	0.00012967	0.11538	5.9164E-05	0.36826	0.00018884	512.789233712763	91.792	1.7412	91.882	91.497	93.238	0.090675					274	130	3	0	0	0	2.3185E-05	3	24351	24308;24351;24392		153.26	67.141	1	1522100			14248	1468;3087;4931	8019	8019	18087;18088;18089	18088					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9854736328125	2	512.789318	1023.56408	0.21428	0.00010988	0.10605	5.4382E-05	0.32033	0.00016426	512.7893829105502	93.195	0.24017	93.282	93.234	93.474	0.08667					30	22	2	0	0	0	0.25066	1	24868	24868		11.64	3.7301	1	87324			14249	1468;3087;4931	8019	8019	18090	18090					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9854125976562	2	512.789318	1023.56408	0.20762	0.00010647	-0.12583	-6.4525E-05	0.081788	4.194E-05	512.7890236010743	93.484	0.31891	93.571	93.353	93.672	0.08667					35	25	2	0	0	0	0.24311	1	24908	24908		16.942	8.349	1	80234			14250	1468;3087;4931	8019	8019	18091	18091					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.789306640625	2	512.789318	1023.56408	0.39001	0.00019999	-0.13864	-7.1094E-05	0.25137	0.0001289	512.7891236481133	91.857	1.5145	91.857	91.557	93.071	0.00046539					240	105	3	0	0	0	2.3185E-05	2	24388	24343;24388		153.26	67.141	1	2093400			14251	1468;3087;4931	8019	8019	18092;18093	18093					0.053244127341372405
IFGVIIDTF	9	Unmodified	_IFGVIIDTF_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	512.789318	1023.56408	0.35653	0.00018282	-0.1895	-9.7175E-05	0.16703	8.565E-05	512.7892153312825	93.188	0.44228	93.188	93.07	93.513	-0.00050354	-0.1598	-0.00016022	NaN	11.64	55	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134540			14252	1468;3087;4931	8019	8019							0.053244127341372405
IFHDISLRF	9	Unmodified	_IFHDISLRF_					0	0	0		ENSG00000144029|ENST00000272418|MRPS5;ENST00000461916.5_1_2:95753104-95767538:-|nuORF	ENSG00000144029|ENST00000272418|MRPS5	ENSG00000144029|ENST00000272418|MRPS5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.8008422851562	2	574.316566	1146.61858	0.19319	0.00011095	0.14452	8.3002E-05	0.33771	0.00019395	574.3164203189232	57.948	0.41019	57.948	57.718	58.128	0					24	14	2	0	0	0	0.24787	1	13974	13974		15.248	2.206	1	187000			14253	4559	8020	8020	18094	18094					0.051134246055880794
IFHDISLRF	9	Unmodified	_IFHDISLRF_					0	0	0		ENSG00000144029|ENST00000272418|MRPS5;ENST00000461916.5_1_2:95753104-95767538:-|nuORF	ENSG00000144029|ENST00000272418|MRPS5	ENSG00000144029|ENST00000272418|MRPS5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	574.316566	1146.61858	0.37825	0.00021723	0.22906	0.00013155	0.60731	0.00034879	574.8183174367496	57.665	0.48146	57.751	57.63	58.112	0.085621	-0.15223	-4.7799E-08	NaN	15.248	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323260			14254	4559	8020	8020							0.051134246055880794
IFHDISLRF	9	Unmodified	_IFHDISLRF_					0	0	0		ENSG00000144029|ENST00000272418|MRPS5;ENST00000461916.5_1_2:95753104-95767538:-|nuORF	ENSG00000144029|ENST00000272418|MRPS5	ENSG00000144029|ENST00000272418|MRPS5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	574.316566	1146.61858	0.37344	0.00021447	0.31068	0.00017843	0.68412	0.0003929	574.3165884482089	58.027	0.53389	58.01	57.821	58.355	-0.0172	0.10668	9.3708E-05	NaN	15.248	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240990			14255	4559	8020	8020							0.051134246055880794
IFHEKTSEF	9	Unmodified	_IFHEKTSEF_					0	0	0		ENSG00000003989|ENST00000494857|SLC7A2;nc|ENSG00000003989|P52569-2|SLC7A2;nc|ENSG00000003989|P52569-3|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.2825317382812	2	569.282389	1136.55022	0.2846	0.00016202	1.0134	0.00057692	1.298	0.00073893	569.2825962235697	30.619	0.47031	30.619	30.282	30.753	0					56	16	4	0	0	0	0.00051734	2	5613	5613;5655		128.93	85.074	1	1657300			14256	305	8021	8021	18095;18096	18095					-0.012588647649408813
IFHEKTSEF	9	Unmodified	_IFHEKTSEF_					0	0	0		ENSG00000003989|ENST00000494857|SLC7A2;nc|ENSG00000003989|P52569-2|SLC7A2;nc|ENSG00000003989|P52569-3|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.2826538085938	2	569.282389	1136.55022	0.38277	0.00021791	1.0513	0.0005985	1.4341	0.00081641	569.282508773889	30.638	0.61937	30.666	30.159	30.778	0.027946					59	21	4	0	0	0	0.0008224	1	5620	5620		125.04	73.408	1	1841400			14257	305	8021	8021	18097	18097					-0.012588647649408813
IFHEKTSEF	9	Unmodified	_IFHEKTSEF_					0	0	0		ENSG00000003989|ENST00000494857|SLC7A2;nc|ENSG00000003989|P52569-2|SLC7A2;nc|ENSG00000003989|P52569-3|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.2825317382812	2	569.282389	1136.55022	0.021833	1.2429E-05	1.1573	0.00065883	1.1791	0.00067125	569.2825041429711	30.604	0.423	30.631	30.335	30.758	0.027157					49	14	4	0	0	0	0.0016724	1	5607	5607		114.19	72.347	1	1978800			14258	305	8021	8021	18098	18098					-0.012588647649408813
IFHEVPLKF	9	Unmodified	_IFHEVPLKF_					0	0	0		ENSG00000128915|ENST00000261520|ICE2;ENST00000483823.1_1_3:88997907-88998639:+|nuORF	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.3037109375	2	565.32386	1128.63317	0.40921	0.00023134	1.5056	0.00085115	1.9148	0.0010825	565.3235634366647	53.355	0.67785	53.411	53.167	53.845	0.056259					63	25	4	0	0	0	0.042824	1	12646	12646		75.761	47.588	1	892800			14259	3399	8022	8022	18099	18099					0.07399496753691892
IFHLFVRFF	9	Unmodified	_IFHLFVRFF_					0	0	0			REV__ENST00000460924.6_1_11:112046255-112064455:+|nuORF	REV__ENST00000460924.6_1_11:112046255-112064455:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9052734375	3	409.234205	1224.68079	0.15254	6.2425E-05	-3.6416	-0.0014903	-3.489	-0.0014278	409.2326053352057	35.736	0.35668	35.819	35.651	36.008	0.082355					16	12	2	0	0	0	0.25843	1	7226	7226		5.7319	0.32914	1	44957	+		14260	18747	8023	8023	18100	18100					0.07743195744546938
IFHLWDTL	8	Unmodified	_IFHLWDTL_					0	0	0		ENST00000510927.5_1_4:106967729-107168455:-|nuORF;nc|ENSG00000145348|Q8TEA7-3|TBCK;nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK	ENST00000510927.5_1_4:106967729-107168455:-|nuORF	ENST00000510927.5_1_4:106967729-107168455:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7785034179688	2	522.779285	1043.54402	0.44922	0.00023485	-0.91725	-0.00047952	-0.46802	-0.00024467	522.778754909497	19.78	0.74871	19.664	19.405	20.154	-0.11592					54	25	3	0	0	0	0.45942	1	2416	2416		2.5775	0	1	187540			14261	4643	8024	8024	18101	18101					0.023986617941773147
IFHPKCYF	8	Unmodified	_IFHPKCYF_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.746337890625	2	527.762581	1053.51061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.665	1	13.598	13.098	14.098	-0.06696								0	0	0	0.37664	1	492	492		2.5775	0.73324	1		+		14262	22992	8025	8025	18102	18102					-0.014006632493646975
IFHVFFVYK	9	Unmodified	_IFHVFFVYK_					0	0	0		ENST00000393348.6_1_2:106362321-106432926:+|nuORF	ENST00000393348.6_1_2:106362321-106432926:+|nuORF	ENST00000393348.6_1_2:106362321-106432926:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3336791992188	2	600.334227	1198.6539	0.44733	0.00026855	0.047011	2.8222E-05	0.49434	0.00029677	600.3342186629694	82.167	1.7056	82.236	81.53	83.235	0.068985					121	70	2	0	0	0	0.34536	1	21242	21242		2.0598	0	1	335590			14263	10045	8026	8026	18103	18103					0.06252087133361783
IFIDEIDSF	9	Unmodified	_IFIDEIDSF_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2734375	2	549.771322	1097.52809	0.63985	0.00035177	4.4103	0.0024247	5.0502	0.0027764	550.2770402328268	83.494	1.4574	83.571	83.188	84.645	0.077095					108	57	3	0	0	0	4.4046E-07	1	21779	21779		162.95	95.607	1	2403600			14264	4122	8027	8027	18104	18104					-0.016770892333852316
IFIDEIDSF	9	Unmodified	_IFIDEIDSF_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	549.771322	1097.52809	0.66879	0.00036768	4.9369	0.0027142	5.6057	0.0030819	550.2771347945451	83.581	1.3269	83.581	83.2	84.527	0	0.0013509	0.00019642	NaN	162.95	103	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2881400			14265	4122	8027	8027							-0.016770892333852316
IFIDEIDSF	9	Unmodified	_IFIDEIDSF_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.771322	1097.52809	0.64223	0.00035308	4.9032	0.0026956	5.5454	0.0030487	550.2771540712017	83.604	1.492	83.587	83.16	84.652	-0.016823	0.0072205	0.00015933	NaN	162.95	120	64	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2852100			14266	4122	8027	8027							-0.016770892333852316
IFIDFGRGRG	10	Unmodified	_IFIDFGRGRG_					0	0	0		nc|ENSG00000186654|P85299-2|PRR5;nc|ENSG00000186654|P85299-4|PRR5;ENST00000455389.3_1_22:45126703-45133124:+|nuORF;nc|ENSG00000186654|P85299-3|PRR5;ENSG00000186654|ENST00000336985|PRR5;ENST00000495017.5_1_22:45127230-45133124:+|nuORF;nc|ENSG00000186654|P85299-5|PRR5	nc|ENSG00000186654|P85299-2|PRR5	nc|ENSG00000186654|P85299-2|PRR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3125610351562	2	569.311815	1136.60908	0.71886	0.00040925	0.93079	0.00052991	1.6496	0.00093916	569.3122946017739	77.644	1.3752	77.7	77.15	78.525	0.05542					108	49	3	0	0	0	0.22916	1	20034	20034		29.082	5.061	1	919110			14267	7636	8028	8028	18105	18105					0.046236563200409364
IFIDKIYSI	9	Unmodified	_IFIDKIYSI_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2583618164062	2	556.323525	1110.6325	0.38147	0.00021222	-0.79832	-0.00044412	-0.41685	-0.0002319	556.3231144621888	68.589	0.84845	68.589	68.381	69.229	0					52	30	2	0	0	0	0.24636	1	17350	17350		16.149	2.2431	1	505470			14268	6248	8029	8029	18106	18106					0.0816065731398794
IFIDKIYSI	9	Unmodified	_IFIDKIYSI_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2584838867188	2	556.323525	1110.6325	0.29584	0.00016458	-0.91127	-0.00050696	-0.61544	-0.00034238	556.3231599262814	68.522	0.63449	68.594	68.383	69.018	0.071938					51	23	3	0	0	0	0.12329	1	17327	17327		41.956	17.935	1	531400			14269	6248	8029	8029	18107	18107					0.0816065731398794
IFIDKIYSI	9	Unmodified	_IFIDKIYSI_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.25830078125	2	556.323525	1110.6325	0.31083	0.00017292	-0.8323	-0.00046303	-0.52147	-0.00029011	556.3231283259857	68.655	0.9586	68.636	68.396	69.355	-0.01915					41	23	2	0	0	0	0.18936	1	17349	17349		32.786	13.529	1	691160			14270	6248	8029	8029	18108	18108					0.0816065731398794
IFIDPGYQTF	10	Unmodified	_IFIDPGYQTF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.800537109375	2	600.800414	1199.58628	0.50895	0.00030578	-0.24054	-0.00014452	0.26842	0.00016126	600.8002260122917	76.607	2.2749	76.607	76.283	78.558	0					221	84	5	0	0	0	0.00042009	7	19727	19727;19777;19821;19935;20007;20100;20319		128.57	97.741	1	7711100			14271	3004	8030	8030	18109;18110;18111;18112;18113;18114;18115	18109					-0.005534075881087119
IFIDPGYQTF	10	Unmodified	_IFIDPGYQTF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.8001098632812	2	600.800414	1199.58628	0.45445	0.00027303	0.12764	7.6687E-05	0.58209	0.00034972	600.8003727732781	81.663	0.26196	81.663	81.558	81.82	0					12	10	2	0	0	0	0.36015	1	21288	21288		10.8	5.5026	1	75144			14272	3004	8030	8030	18116	18116					-0.005534075881087119
IFIDPGYQTF	10	Unmodified	_IFIDPGYQTF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.8004760742188	2	600.800414	1199.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.677	1	78.677	78.177	79.177	0								0	0	0	0.21122	1	20367	20367		38.615	20.468	1				14273	3004	8030	8030	18117	18117					-0.005534075881087119
IFIDPGYQTF	10	Unmodified	_IFIDPGYQTF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.7844848632812	2	600.800414	1199.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.907	1	79.907	79.407	80.407	0								0	0	0	0.28363	1	20743	20743		29.841	3.5724	1				14274	3004	8030	8030	18118	18118					-0.005534075881087119
IFIDPGYQTF	10	Unmodified	_IFIDPGYQTF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.7849731445312	2	600.800414	1199.58628	0.45684	0.00027447	-1.171	-0.00070354	-0.71416	-0.00042907	600.7999845704549	80.423	0.38818	80.423	80.124	80.513	0					22	14	2	0	0	0	0.29144	1	20827	20827		26.021	15.947	1	114730			14275	3004	8030	8030	18119	18119					-0.005534075881087119
IFIDPGYQTF	10	Unmodified	_IFIDPGYQTF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.8005981445312	2	600.800414	1199.58628	0.37972	0.00022813	-0.13669	-8.2123E-05	0.24303	0.00014601	600.8002854987476	76.544	2.674	76.597	76.32	78.994	0.053413					238	98	5	0	0	0	0.00042009	11	19705	19705;19754;19803;19846;19908;19988;20153;20203;20278;20337;20343		128.57	66.971	1	7107100			14276	3004	8030	8030	18120;18121;18122;18123;18124;18125;18126;18127;18128;18129;18130	18120					-0.005534075881087119
IFIDPGYQTF	10	Unmodified	_IFIDPGYQTF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.812255859375	2	600.800414	1199.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.156	1	79.217	78.717	79.717	0.061417								0	0	0	0.2655	1	20502	20502		32.037	18.995	1				14277	3004	8030	8030	18131	18131					-0.005534075881087119
IFIDPGYQTF	10	Unmodified	_IFIDPGYQTF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.7999267578125	2	600.800414	1199.58628	0.56883	0.00034175	-0.70742	-0.00042502	-0.1386	-8.327E-05	600.8001354543401	79.524	0.85398	79.586	79.273	80.127	0.061417					52	33	2	0	0	0	0.22071	1	20526	20526		45.74	36.392	1	103210			14278	3004	8030	8030	18132	18132					-0.005534075881087119
IFIDPGYQTF	10	Unmodified	_IFIDPGYQTF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8111572265625	2	600.800414	1199.58628	0.5887	0.00035369	-2.1137	-0.0012699	-1.525	-0.00091622	600.798643767582	79.269	0.22357	79.24	79.104	79.327	-0.028931					12	8	2	0	0	0	0.23997	1	20515	20515		40.239	26.333	1	88946			14279	3004	8030	8030	18133	18133					-0.005534075881087119
IFIFRIMV	8	Unmodified	_IFIFRIMV_					0	0	0		ENSG00000169562|ENST00000361726|GJB1	ENSG00000169562|ENST00000361726|GJB1	ENSG00000169562|ENST00000361726|GJB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2756958007812	2	519.812073	1037.60959	0.5504	0.00028611	0.48344	0.0002513	1.0338	0.0005374	519.8133663665202	83.775	0.48019	83.758	83.455	83.935	-0.016823					36	21	2	0	0	0	0.3439	1	21837	21837		2.8892	0	1	228550			14280	6363	8031	8031	18134	18134					0.09229359715527607
IFIITYPKSG	10	Unmodified	_IFIITYPKSG_					0	0	0		ENSG00000088002|ENST00000201586|SULT2B1;nc|ENSG00000088002|O00204-2|SULT2B1	ENSG00000088002|ENST00000201586|SULT2B1	ENSG00000088002|ENST00000201586|SULT2B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.2793579101562	2	569.828975	1137.6434	0.61535	0.00035065	-1.8763	-0.0010692	-1.2609	-0.00071852	570.3291920812633	77.374	0.16887	77.429	77.314	77.482	0.055412					8	5	2	0	0	0	0.3156	1	19947	19947		10.824	0	1	46626			14281	1313	8032	8032	18135	18135					0.08008059688268077
IFIITYPKSG	10	Unmodified	_IFIITYPKSG_					0	0	0		ENSG00000088002|ENST00000201586|SULT2B1;nc|ENSG00000088002|O00204-2|SULT2B1	ENSG00000088002|ENST00000201586|SULT2B1	ENSG00000088002|ENST00000201586|SULT2B1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.828975	1137.6434	0.51821	0.00029529	-1.6191	-0.00092259	-1.1009	-0.0006273	570.3297341419872	77.384	0.16073	77.384	77.336	77.496	0	-0.030701	0.00011794	NaN	10.824	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54851			14282	1313	8032	8032							0.08008059688268077
IFIITYPKSG	10	Unmodified	_IFIITYPKSG_					0	0	0		ENSG00000088002|ENST00000201586|SULT2B1;nc|ENSG00000088002|O00204-2|SULT2B1	ENSG00000088002|ENST00000201586|SULT2B1	ENSG00000088002|ENST00000201586|SULT2B1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	569.828975	1137.6434	0.65668	0.00037419	-1.8617	-0.0010608	-1.205	-0.00068666	570.3298369772269	77.462	0.10739	77.43	77.375	77.482	-0.031334	0.015821	-0.00015857	NaN	10.824	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59183			14283	1313	8032	8032							0.08008059688268077
IFIIYLKKPM	10	Unmodified	_IFIIYLKKPM_					0	0	0		ENSG00000153157|ENST00000283141|SYCP2L;ENST00000480294.1_1_6:10891760-10930631:+|nuORF	ENSG00000153157|ENST00000283141|SYCP2L	ENSG00000153157|ENST00000283141|SYCP2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.368896484375	2	633.388145	1264.76174	-0.060202	-3.8131E-05	-0.33913	-0.0002148	-0.39933	-0.00025293	633.8903085259533	104.58	0.56749	104.58	104.34	104.91	0					120	79	2	0	0	0	0.41085	1	27801	27801		1.4819	0	1	156630			14284	5062	8033	8033	18136	18136					0.13994715672424718
IFIKDSNSL	9	Unmodified	_IFIKDSNSL_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7874755859375	2	518.787307	1035.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.836	1	43.92	43.42	44.42	0.083996								0	0	0	0.00061386	1	9653	9653		100.09	27.123	1				14285	1512	8034	8034	18137	18137					0.04370323240414109
IFIPALPATF	10	Unmodified	_IFIPALPATF_					0	0	0		ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1;ENST00000571335.5_1_17:19445708-19459199:+|nuORF;nc|ENSG00000142494|Q96FL8-2|SLC47A1;ENST00000497548.5_1_17:19437252-19459239:+|nuORF	ENSG00000142494|ENST00000270570|SLC47A1	ENSG00000142494|ENST00000270570|SLC47A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.321044921875	2	545.320786	1088.62702	0.32488	0.00017716	-1.3878	-0.00075677	-1.0629	-0.00057961	545.3189745283296	93.692	2.5308	93.692	93.27	95.801	0					402	228	4	0	0	0	0.0048001	3	24991	24953;24991;25033		92.822	58.72	1	703830			14286	4444	8035	8035	18138;18139;18140	18139					0.08624978522175297
IFIPALPATF	10	Unmodified	_IFIPALPATF_					0	0	0		ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1;ENST00000571335.5_1_17:19445708-19459199:+|nuORF;nc|ENSG00000142494|Q96FL8-2|SLC47A1;ENST00000497548.5_1_17:19437252-19459239:+|nuORF	ENSG00000142494|ENST00000270570|SLC47A1	ENSG00000142494|ENST00000270570|SLC47A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3208618164062	2	545.320786	1088.62702	0.54327	0.00029626	-0.59842	-0.00032633	-0.05514	-3.0069E-05	545.319839345998	93.617	1.1566	93.703	93.06	94.217	0.08667					249	97	4	0	0	0	0.0048001	3	24951	24910;24951;24987		92.822	62.597	1	1281000			14287	4444	8035	8035	18141;18142;18143	18142					0.08624978522175297
IFIPALPATF	10	Unmodified	_IFIPALPATF_					0	0	0		ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1;ENST00000571335.5_1_17:19445708-19459199:+|nuORF;nc|ENSG00000142494|Q96FL8-2|SLC47A1;ENST00000497548.5_1_17:19437252-19459239:+|nuORF	ENSG00000142494|ENST00000270570|SLC47A1	ENSG00000142494|ENST00000270570|SLC47A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3207397460938	2	545.320786	1088.62702	0.71669	0.00039083	-0.066134	-3.6064E-05	0.65056	0.00035476	545.3204035714076	93.71	1.256	93.71	93.34	94.596	-0.00051117					210	97	3	0	0	0	0.0042061	3	24941	24941;24982;25037		96.285	60.241	1	1274200			14288	4444	8035	8035	18144;18145;18146	18144					0.08624978522175297
IFIQNSKLYF	10	Unmodified	_IFIQNSKLYF_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.8531494140625	2	636.852981	1271.69141	0.30737	0.00019575	-0.031112	-1.9814E-05	0.27625	0.00017593	636.8529335700322	65.4	2.1794	65.4	65.1	67.279	0					201	77	5	0	0	0	2.1034E-20	3	16272	16272;16321;16502		211.85	155.68	1	6490200			14289	4154	8036	8036	18147;18148;18149	18147					0.06643133608326934
IFIQNSKLYF	10	Unmodified	_IFIQNSKLYF_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.8532104492188	2	636.852981	1271.69141	0.20949	0.00013342	0.10075	6.416E-05	0.31024	0.00019758	636.8529854468012	65.284	2.1006	65.373	65.06	67.161	0.088882					206	76	5	0	0	0	2.1034E-20	4	16230	16230;16277;16319;16446		211.85	142.75	1	6698900			14290	4154	8036	8036	18150;18151;18152;18153	18150					0.06643133608326934
IFIQNSKLYF	10	Unmodified	_IFIQNSKLYF_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.8530883789062	2	636.852981	1271.69141	0.54649	0.00034803	-0.26335	-0.00016772	0.28314	0.00018032	636.8527630704351	65.433	2.1176	65.422	65.098	67.215	-0.011337					188	76	5	0	0	0	2.1034E-20	5	16300	16254;16300;16449;16502;16557		211.85	142.75	1	7173900			14291	4154	8036	8036	18154;18155;18156;18157;18158	18155					0.06643133608326934
IFIQNSKLYF	10	Unmodified	_IFIQNSKLYF_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.8739624023438	2	636.852981	1271.69141	0.68692	0.00043747	0.26161	0.00016661	0.94853	0.00060407	637.3548532820936	70.978	0.66943	70.953	70.407	71.077	-0.024872					28	23	2	0	0	0	0.31691	1	17882	17882		9.3831	0	1	266180			14292	4154	8036	8036	18159	18159					0.06643133608326934
IFIQVISVW	9	Unmodified	_IFIQVISVW_					0	0	0		ENST00000395957.6_3_8:101932523-101932712:-|nuORF	ENST00000395957.6_3_8:101932523-101932712:-|nuORF	ENST00000395957.6_3_8:101932523-101932712:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2576904296875	2	552.826235	1103.63792	0.41166	0.00022758	0.45488	0.00025147	0.86654	0.00047905	552.825257623055	70.719	0.16906	70.694	70.549	70.718	-0.024872					7	5	2	0	0	0	0.24739	1	17896	17896		13.508	0	1	98593			14293	10102	8037	8037	18160	18160					0.09024380896471484
IFIRNPRTLF	10	Unmodified	_IFIRNPRTLF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.5899658203125	3	426.255669	1275.74518	0.16236	6.9209E-05	-0.50277	-0.00021431	-0.34041	-0.0001451	426.2555008429262	54.437	0.98819	54.5	53.902	54.89	0.063202					92	36	3	0	0	0	0.20023	1	12932	12932		32.616	17.659	1	865090			14294	12694	8038	8038	18161	18161					0.11833350830693234
IFIRNPRTLF	10	Unmodified	_IFIRNPRTLF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.2554626464844	3	426.255669	1275.74518	0.24533	0.00010457	-0.54291	-0.00023142	-0.29758	-0.00012684	426.2554267311051	54.681	0.80986	54.665	54.17	54.98	-0.015919					68	28	3	0	0	0	0.24515	1	12986	12986		27.129	12.172	1	1191400			14295	12694	8038	8038	18162	18162					0.11833350830693234
IFIRNVLLF	9	Unmodified	_IFIRNVLLF_					0	0	0		ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.287841796875	2	567.855327	1133.6961	0.65733	0.00037327	-0.75423	-0.00042829	-0.0969	-5.5025E-05	567.8547376728072	78.577	0.72134	78.547	78.301	79.022	-0.030434					59	29	3	0	0	0	0.22596	1	20299	20299		21.747	0	1	326110			14296	4407	8039	8039	18163	18163					0.1346006254175336
IFISKHLFE	9	Unmodified	_IFISKHLFE_					0	0	0		nc|ENSG00000150054|Q5T2T1-2|MPP7;MPP7|p.K502Nfs*7|1|0.03|ENSG00000150054|chr10:28056524-28056525|TC/-|frameshift_variant;MPP7|p.I504Sfs*23|1|0.04|ENSG00000150054|chr10:28056521-28056522|-/ATGGA|frameshift_variant;ENSG00000150054|ENST00000683449|MPP7	nc|ENSG00000150054|Q5T2T1-2|MPP7	nc|ENSG00000150054|Q5T2T1-2|MPP7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3193359375	2	567.321317	1132.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.978	1	44.056	43.556	44.556	0.077515								0	0	0	0.035558	1	9706	9706		65.235	5.8666	1				14297	4902	8040	8040	18164	18164					0.06707192891099112
IFITDKTNF	9	Unmodified	_IFITDKTNF_					0	0	0		L1PBa_dup1914|chr16:20454552-20458311:+|1.873729371871474|0.2397336971051269|2.97|524.0|59|2|sense	L1PBa_dup1914|chr16:20454552-20458311:+|1.873729371871474|0.2397336971051269|2.97|524.0|59|2|sense	L1PBa_dup1914|chr16:20454552-20458311:+|1.873729371871474|0.2397336971051269|2.97|524.0|59|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.278076171875	2	549.795132	1097.57571	0.37727	0.00020742	1.9581	0.0010766	2.3354	0.001284	549.7957546428012	80.441	0.59259	80.441	80.177	80.77	0					26	22	2	0	0	0	0.23783	1	20931	20931		18.135	0	1	81875			14298	12498	8041	8041	18165	18165					0.030826097574845335
IFITVNCLST	10	Unmodified	_IFITVNCLST_					0	0	0		nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	nc|ENSG00000083307|Q6ISB3-2|GRHL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7965698242188	2	555.796817	1109.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.26	1	119.29	118.79	119.79	0.026253								0	0	0	0.38187	1	30854	30854		1.3295	0	1				14299	1218	8042	8042	18166	18166					0.028675365398157737
IFKPPDPDNTF	11	Unmodified	_IFKPPDPDNTF_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	645.8219604492188	2	645.821878	1289.6292	0.78262	0.00050543	-0.43327	-0.00027982	0.34935	0.00022562	645.8214915187689	54.687	0.88026	54.687	54.268	55.148	0					78	31	4	0	0	0	0.00031953	3	12987	12938;12987;13038		106.37	64.41	1	941780			14300	6013	8043	8043	18167;18168;18169	18168					-0.004026375306921182
IFKPPDPDNTF	11	Unmodified	_IFKPPDPDNTF_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	645.8223876953125	2	645.821878	1289.6292	0.69197	0.00044689	-0.25104	-0.00016213	0.44093	0.00028476	645.8216567161742	54.605	0.93463	54.669	54.246	55.181	0.063206					86	34	4	0	0	0	0.0010602	3	13022	12925;12973;13022		96.034	62.569	1	1203300			14301	6013	8043	8043	18170;18171;18172	18172					-0.004026375306921182
IFKPPDPDNTF	11	Unmodified	_IFKPPDPDNTF_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	645.8217163085938	2	645.821878	1289.6292	0.70823	0.00045739	-0.3158	-0.00020395	0.39243	0.00025344	645.8215644622959	54.768	0.80066	54.752	54.282	55.083	-0.015919					69	28	3	0	0	0	0.00012014	2	13011	13011;13061		109.15	74.214	1	1041200			14302	6013	8043	8043	18173;18174	18173					-0.004026375306921182
IFKTLSSKF	9	Unmodified	_IFKTLSSKF_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.V1010Cfs*42|1|0.18|ENSG00000168488|chr16:28836062-28836062|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2776489257812	2	535.815867	1069.61718	0.43829	0.00023484	1.72	0.00092158	2.1582	0.0011564	535.8168209418675	40.822	0.47062	40.914	40.667	41.138	0.09267					28	17	2	0	0	0	0.13573	1	8708	8708		49.742	11.768	1	305140			14303	64	8044	8044	18175	18175					0.08515790516798916
IFKWKSMI	8	Unmodified	_IFKWKSMI_					0	0	0		ENSG00000166262|ENST00000299338|FAM227B;nc|ENSG00000166262|Q96M60-2|FAM227B;ENST00000558615.5_1_15:49867204-49907386:-|nuORF	ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.8013916015625	2	526.801706	1051.58886	0.1664	8.7662E-05	-0.0033938	-1.7879E-06	0.16301	8.5874E-05	526.8015909444122	13.023	0.24651	13.023	12.9	13.147	0					16	8	3	0	0	0	0.46022	1	313	313		2.3027	0	1	44330			14304	6052	8045	8045	18176	18176					0.06512769335881785
IFKWKSMI	8	Unmodified	_IFKWKSMI_					0	0	0		ENSG00000166262|ENST00000299338|FAM227B;nc|ENSG00000166262|Q96M60-2|FAM227B;ENST00000558615.5_1_15:49867204-49907386:-|nuORF	ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	526.801706	1051.58886	0.11929	6.2841E-05	-0.18023	-9.4946E-05	-0.060943	-3.2105E-05	526.8015459500359	13.094	0.22795	12.995	12.869	13.097	-0.099291	-0.009227	-7.9796E-05	NaN	2.3027	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49657			14305	6052	8045	8045							0.06512769335881785
IFKWKSMI	8	Unmodified	_IFKWKSMI_					0	0	0		ENSG00000166262|ENST00000299338|FAM227B;nc|ENSG00000166262|Q96M60-2|FAM227B;ENST00000558615.5_1_15:49867204-49907386:-|nuORF	ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	526.801706	1051.58886	0.089416	4.7105E-05	-0.05392	-2.8405E-05	0.035497	1.87E-05	526.8014897539015	13.062	0.19558	12.995	12.878	13.073	-0.067496	-0.0094976	5.3286E-05	NaN	2.3027	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43686			14306	6052	8045	8045							0.06512769335881785
IFLCLQYR	8	Unmodified	_IFLCLQYR_					0	0	0		nc|ENSG00000204655|Q16653-12|MOG;nc|ENSG00000204655|Q16653-4|MOG;nc|ENSG00000204655|Q16653-9|MOG;nc|ENSG00000204655|Q16653-8|MOG;nc|ENSG00000204655|Q16653-11|MOG;nc|ENSG00000204655|Q16653-2|MOG;nc|ENSG00000204655|Q16653-6|MOG;nc|ENSG00000204655|Q16653-3|MOG;nc|ENSG00000204655|Q16653-7|MOG;ENSG00000204655|ENST00000376917|MOG;nc|ENSG00000204655|Q16653-5|MOG;nc|ENSG00000204655|Q16653-13|MOG	nc|ENSG00000204655|Q16653-12|MOG	nc|ENSG00000204655|Q16653-12|MOG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7992553710938	2	528.288963	1054.56337	0.17635	9.3166E-05	-0.37314	-0.00019713	-0.19679	-0.00010396	528.2888030364098	13.614	0.28302	13.614	13.457	13.74	0					14	9	2	0	0	0	0.34353	1	505	505		4.756	0.81161	1	133080			14307	8250	8046	8046	18177	18177					0.038272948134363105
IFLKLFKLIR	10	Unmodified	_IFLKLFKLIR_					0	0	0			REV__ENST00000546531.5_1_12:49396684-49399341:-|nuORF	REV__ENST00000546531.5_1_12:49396684-49399341:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.96002197265625	3	430.960193	1289.85875	-0.47249	-0.00020362	0.66377	0.00028606	0.19128	8.2435E-05	430.96032814393976	35.379	1.4144	35.379	34.892	36.307	0					184	51	5	0	0	0	0.4155	1	7086	7086		0.62683	0.62683	1	2798900	+		14308	18171	8047	8047	18178	18178					0.22541445943738836
IFLKLFKLIR	10	Unmodified	_IFLKLFKLIR_					0	0	0			REV__ENST00000546531.5_1_12:49396684-49399341:-|nuORF	REV__ENST00000546531.5_1_12:49396684-49399341:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.9601135253906	3	430.960193	1289.85875	-0.47787	-0.00020594	0.63854	0.00027519	0.16067	6.9243E-05	430.96032604315576	35.29	1.4089	35.366	34.843	36.252	0.075306					168	50	5	0	0	0	0.4155	2	7064	7064;7190		0.62683	0.62683	1	3138700	+		14309	18171	8047	8047	18179;18180	18179					0.22541445943738836
IFLLAALFEW	10	Unmodified	_IFLLAALFEW_					0	0	0		ENST00000552885.2_1_12:80328990-80329323:+|nuORF	ENST00000552885.2_1_12:80328990-80329323:+|nuORF	ENST00000552885.2_1_12:80328990-80329323:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.8482666015625	2	611.847167	1221.67978	0.18237	0.00011158	0.51724	0.00031647	0.69961	0.00042805	611.8475552423649	69.739	1.806	69.739	69.067	70.873	0					185	65	4	0	0	0	0.2892	1	17759	17759		21.747	0.20967	1	2224100			14310	11815	8048	8048	18181	18181					0.07780936584981646
IFLNKTFQW	9	Unmodified	_IFLNKTFQW_					0	0	0		ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B	ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B	ENSG00000139133|ENST00000266483|ALG10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.7457275390625	2	598.826766	1195.63898	0.47026	0.0002816	0.07434	4.4517E-05	0.5446	0.00032612	599.3286278258518	68.128	0.38419	68.128	67.842	68.226	0					18	13	2	0	0	0	0.16853	1	17140	17140		31.268	8.5321	1	293860			14311	4208;6873	8049	8049	18182	18182					0.04898595265376571
IFLNKTFQW	9	Unmodified	_IFLNKTFQW_					0	0	0		ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B	ENSG00000139133|ENST00000266483|ALG10;ENSG00000175548|ENST00000308742|ALG10B	ENSG00000139133|ENST00000266483|ALG10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.74560546875	2	598.826766	1195.63898	0.5767	0.00034534	-0.46974	-0.00028129	0.10696	6.4048E-05	599.3280990331697	67.964	0.29359	68.042	67.925	68.219	0.078049					13	10	2	0	0	0	0.20167	1	17090	17090		29.082	3.6823	1	219730			14312	4208;6873	8049	8049	18183	18183					0.04898595265376571
IFLPNNIID	9	Unmodified	_IFLPNNIID_					0	0	0			REV__ENSG00000137225|ENST00000398776|CAPN11	REV__ENSG00000137225|ENST00000398776|CAPN11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3003540039062	2	529.797675	1057.5808	0.52836	0.00027992	-2.4506	-0.0012983	-1.9223	-0.0010184	529.7951878947965	51.671	0.91398	51.671	51.382	52.296	0					50	33	2	0	0	0	0.15464	1	12165	12165		30.225	9.7712	1	875760	+		14313	15851	8050	8050	18184	18184					0.05430913620079991
IFLRGNERL	9	Unmodified	_IFLRGNERL_					0	0	0			REV__ENST00000453011.5_1_1:101538218-101538350:+|nuORF	REV__ENST00000453011.5_1_1:101538218-101538350:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.3274536132812	2	559.327465	1116.64038	0.35907	0.00020084	-0.56535	-0.00031622	-0.20628	-0.00011538	559.3271371371479	21.367	0.74222	21.367	21.052	21.795	0					60	25	3	0	0	0	0.29176	1	2849	2849		10.074	1.3285	1	348270	+		14314	21133	8051	8051	18185	18185					0.08672229354147021
IFLRMEGHIG	10	Unmodified	_IFLRMEGHIG_					0	0	0			REV__ENST00000548674.5_1_12:57881816-57882819:+|nuORF	REV__ENST00000548674.5_1_12:57881816-57882819:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8338623046875	2	586.815876	1171.6172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.177	1	81.242	80.742	81.742	0.065094								0	0	0	0.37044	1	21124	21124		6.2058	0.97511	1		+		14315	22189	8052	8052	18186	18186					0.03825467245155778
IFLRMEGHIG	10	Unmodified	_IFLRMEGHIG_					0	0	0			REV__ENST00000548674.5_1_12:57881816-57882819:+|nuORF	REV__ENST00000548674.5_1_12:57881816-57882819:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8341064453125	2	586.815876	1171.6172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.575	1	81.551	81.051	82.051	-0.02404								0	0	0	0.36126	1	21237	21237		10.074	1.4806	1		+		14316	22189	8052	8052	18187	18187					0.03825467245155778
IFLSQPILL	9	Unmodified	_IFLSQPILL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000464273.1_1_2:28974903-28999853:+|nuORF;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3287963867188	2	522.328611	1042.64267	0.60093	0.00031388	-0.22575	-0.00011792	0.37518	0.00019597	522.3283899779809	88.347	2.3812	88.347	87.951	90.332	0					340	143	5	0	0	0	0.00070271	9	23327	23289;23327;23365;23405;23453;23498;23541;23587;23722		126.57	0	1	2795300			14317	6643;7608;8358	8053	8053	18188;18189;18190;18191;18192;18193;18194;18195;18196	18189					0.12305265039231017
IFLSQPILL	9	Unmodified	_IFLSQPILL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000464273.1_1_2:28974903-28999853:+|nuORF;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.3287963867188	2	522.328611	1042.64267	0.48279	0.00025217	-0.052657	-2.7504E-05	0.43013	0.00022467	522.3284737877469	88.214	2.3021	88.303	87.95	90.252	0.089203					317	133	4	0	0	0	0.00070271	9	23298	23250;23298;23337;23380;23429;23521;23569;23744;23786		126.57	0	1	3957400			14318	6643;7608;8358	8053	8053	18197;18198;18199;18200;18201;18202;18203;18204;18205	18198					0.12305265039231017
IFLSQPILL	9	Unmodified	_IFLSQPILL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000464273.1_1_2:28974903-28999853:+|nuORF;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.328857421875	2	522.328611	1042.64267	0.50483	0.00026369	-0.069854	-3.6487E-05	0.43498	0.0002272	522.3284454551147	88.35	2.148	88.347	87.914	90.062	-0.0028458					303	123	4	0	0	0	0.00070271	11	23324	23274;23324;23364;23409;23455;23502;23554;23691;23732;23772;23815		126.57	0	1	3931400			14319	6643;7608;8358	8053	8053	18206;18207;18208;18209;18210;18211;18212;18213;18214;18215;18216	18207					0.12305265039231017
IFLTKANLI	9	Unmodified	_IFLTKANLI_					0	0	0		ENSG00000119638|ENST00000238616|NEK9;ENST00000556170.5_1_14:75573136-75593624:-|nuORF	ENSG00000119638|ENST00000238616|NEK9	ENSG00000119638|ENST00000238616|NEK9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3060913085938	2	516.826235	1031.63792	0.64936	0.00033561	-0.44434	-0.00022964	0.20503	0.00010596	516.8259981683605	60.543	0.48809	60.543	60.331	60.819	0					35	17	3	0	0	0	0.099099	1	14796	14796		55.503	24.234	1	584590			14320	2890	8054	8054	18217	18217					0.12336380896454102
IFLTKANLI	9	Unmodified	_IFLTKANLI_					0	0	0		ENSG00000119638|ENST00000238616|NEK9;ENST00000556170.5_1_14:75573136-75593624:-|nuORF	ENSG00000119638|ENST00000238616|NEK9	ENSG00000119638|ENST00000238616|NEK9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.8262329101562	2	516.826235	1031.63792	0.47331	0.00024462	-0.29185	-0.00015084	0.18146	9.3784E-05	516.8260035651967	60.398	0.55257	60.493	60.341	60.894	0.095093					34	19	2	0	0	0	0.05341	1	14799	14799		51.63	1.6968	1	466930			14321	2890	8054	8054	18218	18218					0.12336380896454102
IFLTKANLI	9	Unmodified	_IFLTKANLI_					0	0	0		ENSG00000119638|ENST00000238616|NEK9;ENST00000556170.5_1_14:75573136-75593624:-|nuORF	ENSG00000119638|ENST00000238616|NEK9	ENSG00000119638|ENST00000238616|NEK9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.3054809570312	2	516.826235	1031.63792	0.53886	0.00027849	-0.39814	-0.00020577	0.14071	7.2724E-05	516.8259420780352	60.508	0.56246	60.499	60.3	60.862	-0.0094566					32	20	2	0	0	0	0.067563	1	14794	14794		66.457	14.188	1	710560			14322	2890	8054	8054	18219	18219					0.12336380896454102
IFLTRNTKS	9	Unmodified	_IFLTRNTKS_					0	0	0			REV__ENSG00000243137|ENST00000405312|PSG4	REV__ENSG00000243137|ENST00000405312|PSG4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.33056640625	2	540.314023	1078.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.707	1	80.773	80.273	81.273	0.065094								0	0	0	0.23091	1	20980	20980		10.824	0	1		+		14323	19190	8055	8055	18220	18220					0.07733120742932442
IFMDWCLG	8	Unmodified	_IFMDWCLG_					0	0	0		ENST00000435560.1_1_3:178819298-178865723:-|nuORF	ENST00000435560.1_1_3:178819298-178865723:-|nuORF	ENST00000435560.1_1_3:178819298-178865723:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.1753845214844	2	492.719524	983.424495	0.31227	0.00015386	0.00071806	3.538E-07	0.31299	0.00015421	492.71947363023276	17.612	0.38337	17.612	17.452	17.835	0					16	12	2	0	0	0	0.34319	1	1668	1668		5.7604	0	1	32284			14324	10509	8056	8056	18221	18221					-0.06787991146404693
IFNGFSVTL	9	Unmodified	_IFNGFSVTL_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547908.1_1_12:98989476-98991822:+|nuORF	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2713317871094	2	499.271293	996.528032	0.35002	0.00017476	-0.0025196	-1.258E-06	0.3475	0.0001735	499.27133313206696	80.847	0.573	80.847	80.657	81.23	0					64	27	3	0	0	0	0.04299	1	21093	21093		55.503	30.103	1	552910			14325	1046	8057	8057	18222	18222					0.029629555573023936
IFNGFSVTL	9	Unmodified	_IFNGFSVTL_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547908.1_1_12:98989476-98991822:+|nuORF	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2713317871094	2	499.271293	996.528032	0.16853	8.4142E-05	0.15844	7.9106E-05	0.32697	0.00016325	499.2714439725716	80.837	0.58089	80.902	80.628	81.209	0.065102					47	25	2	0	0	0	0.0013683	2	21027	20982;21027		118.07	73.661	1	481080			14326	1046	8057	8057	18223;18224	18224					0.029629555573023936
IFNGFSVTL	9	Unmodified	_IFNGFSVTL_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547908.1_1_12:98989476-98991822:+|nuORF	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2717590332031	2	499.271293	996.528032	0.34925	0.00017437	0.18752	9.3625E-05	0.53677	0.000268	499.2714021991499	80.921	0.61378	80.894	80.678	81.291	-0.026817					56	25	3	0	0	0	0.00078391	3	21030	21030;21084;21116		125.53	79.508	1	364970			14327	1046	8057	8057	18225;18226;18227	18225					0.029629555573023936
IFNPVSKNF	9	Unmodified	_IFNPVSKNF_					0	0	0		ENST00000589391.5_1_2:179401165-179403504:+|nuORF;ENST00000415561.1_1_2:179402212-179403504:+|nuORF;ENST00000588244.5_1_2:179402120-179403504:+|nuORF;ENST00000419746.5_1_2:179402219-179403504:+|nuORF;ENST00000589434.5_1_2:179388144-179403504:+|nuORF	ENST00000589391.5_1_2:179401165-179403504:+|nuORF	ENST00000589391.5_1_2:179401165-179403504:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.82421875	2	533.290017	1064.56548	0.89847	0.00047915	-1.2284	-0.00065508	-0.32991	-0.00017594	533.2893833361919	50.77	0.65352	50.77	50.544	51.198	0					41	23	2	0	0	0	0.099099	1	11855	11855		55.503	11.644	1	1158000			14328	10313	8058	8058	18228	18228					0.03578046822894976
IFNPVSKNF	9	Unmodified	_IFNPVSKNF_					0	0	0		ENST00000589391.5_1_2:179401165-179403504:+|nuORF;ENST00000415561.1_1_2:179402212-179403504:+|nuORF;ENST00000588244.5_1_2:179402120-179403504:+|nuORF;ENST00000419746.5_1_2:179402219-179403504:+|nuORF;ENST00000589434.5_1_2:179388144-179403504:+|nuORF	ENST00000589391.5_1_2:179401165-179403504:+|nuORF	ENST00000589391.5_1_2:179401165-179403504:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.8241577148438	2	533.290017	1064.56548	0.82295	0.00043887	-1.2257	-0.00065363	-0.40272	-0.00021476	533.2894403146572	50.863	0.6757	50.872	50.621	51.297	0.0095634					42	25	2	0	0	0	0.11234	1	11862	11862		51.63	7.7715	1	1215800			14329	10313	8058	8058	18229	18229					0.03578046822894976
IFNPVSKNF	9	Unmodified	_IFNPVSKNF_					0	0	0		ENST00000589391.5_1_2:179401165-179403504:+|nuORF;ENST00000415561.1_1_2:179402212-179403504:+|nuORF;ENST00000588244.5_1_2:179402120-179403504:+|nuORF;ENST00000419746.5_1_2:179402219-179403504:+|nuORF;ENST00000589434.5_1_2:179388144-179403504:+|nuORF	ENST00000589391.5_1_2:179401165-179403504:+|nuORF	ENST00000589391.5_1_2:179401165-179403504:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	533.290017	1064.56548	0.66781	0.00035614	-1.3602	-0.00072539	-0.6924	-0.00036925	533.2893958046146	50.823	0.64351	50.87	50.577	51.221	0.046574	0.032369	-0.00011021	NaN	47.594	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1118000			14330	10313	8058	8058							0.03578046822894976
IFNVDLTAF	9	Unmodified	_IFNVDLTAF_					0	0	0		Tigger1_dup3125|chr4:68946744-68948416:-|1.16044740011086|0.0637849449006259|4.19|511.0|45|3|sense;chr4:68945454-68948010|301|66.31|0.39|7.43|-|0|TE_info:Tigger1,Tigger1_dup3125,TcMar-Tigger,DNA,donor,-,68948010,68948416|UGT2A3,None|5	Tigger1_dup3125|chr4:68946744-68948416:-|1.16044740011086|0.0637849449006259|4.19|511.0|45|3|sense	Tigger1_dup3125|chr4:68946744-68948416:-|1.16044740011086|0.0637849449006259|4.19|511.0|45|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2927856445312	2	520.276575	1038.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.993	1	46.053	45.553	46.553	0.059834								0	0	0	0.18374	1	10323	10323		26.884	2.2098	1				14331	164	8059	8059	18230	18230					0.020869382116870838
IFNYYLIF	8	Unmodified	_IFNYYLIF_					0	0	0		ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	ENSG00000132965|ENST00000380490|ALOX5AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7799072265625	2	546.791861	1091.56917	0.42412	0.0002319	-0.49218	-0.00026912	-0.068061	-3.7215E-05	547.2924053119988	80.001	0.98862	80.001	79.524	80.513	0					64	31	3	0	0	0	0.42446	1	20864	20864		14.582	1.0738	1	434570			14332	3683	8060	8060	18231	18231					0.027047165967360343
IFPISYVEF	9	Unmodified	_IFPISYVEF_					0	0	0		nc|ENSG00000154447|Q7Z6J0-3|SH3RF1;ENSG00000154447|ENST00000284637|SH3RF1	nc|ENSG00000154447|Q7Z6J0-3|SH3RF1	nc|ENSG00000154447|Q7Z6J0-3|SH3RF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7457885742188	2	557.794601	1113.57465	0.57992	0.00032348	1.2406	0.00069202	1.8206	0.0010155	557.796121623327	54.743	0.11438	54.727	54.681	54.796	-0.015923					5	3	2	0	0	0	0.24913	1	13003	13003		12.532	0	1	198660			14333	5129	8061	8061	18232	18232					0.02240395388548677
IFPKPPLYTF	10	Unmodified	_IFPKPPLYTF_					0	0	0		nc|ENSG00000177853|Q6AHZ1-2|ZNF518A;ENSG00000177853|ENST00000316045|ZNF518A	nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.8471069335938	2	611.847167	1221.67978	0.18237	0.00011158	0.51724	0.00031647	0.69961	0.00042805	611.8475552423649	69.739	1.806	69.739	69.067	70.873	0					185	65	4	0	0	0	0.023567	6	17571	17571;17619;17669;17700;17776;17836		67.838	43.818	1	2224100			14334	7018	8062	8062	18233;18234;18235;18236;18237;18238	18233					0.07780936584981646
IFPKPPLYTF	10	Unmodified	_IFPKPPLYTF_					0	0	0		nc|ENSG00000177853|Q6AHZ1-2|ZNF518A;ENSG00000177853|ENST00000316045|ZNF518A	nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.8471069335938	2	611.847167	1221.67978	0.18678	0.00011428	0.53223	0.00032564	0.719	0.00043992	611.8475487095574	69.724	1.7944	69.79	69.038	70.833	0.06604					180	63	4	0	0	0	0.015324	5	17598	17549;17598;17658;17672;17735		76.825	46.188	1	2372600			14335	7018	8062	8062	18239;18240;18241;18242;18243	18240					0.07780936584981646
IFPKPPLYTF	10	Unmodified	_IFPKPPLYTF_					0	0	0		nc|ENSG00000177853|Q6AHZ1-2|ZNF518A;ENSG00000177853|ENST00000316045|ZNF518A	nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.8475952148438	2	611.847167	1221.67978	0.20488	0.00012535	0.52516	0.00032132	0.73004	0.00044667	611.847519915469	69.815	1.6877	69.793	69.059	70.747	-0.022087					175	60	4	0	0	0	0.023567	7	17667	17572;17619;17667;17685;17777;17829;17839		67.838	43.818	1	2379500			14336	7018	8062	8062	18244;18245;18246;18247;18248;18249;18250	18246					0.07780936584981646
IFPLETPAF	9	Unmodified	_IFPLETPAF_					0	0	0		ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7815551757812	2	517.781493	1033.54843	0.64526	0.0003341	-0.10056	-5.2067E-05	0.5447	0.00028204	517.7812057116581	83.639	1.1243	83.639	83.105	84.23	0					109	44	3	0	0	0	0.00012008	5	21899	21807;21855;21899;21943;21990		137.59	106.32	1	1951800			14337	5716	8063	8063	18251;18252;18253;18254;18255	18253					0.033001262170728296
IFPLETPAF	9	Unmodified	_IFPLETPAF_					0	0	0		ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7816772460938	2	517.781493	1033.54843	0.48244	0.0002498	0.014577	7.5477E-06	0.49701	0.00025734	517.7812913016572	83.587	1.2103	83.664	83.11	84.32	0.077095					135	47	4	0	0	0	0.0016131	5	21818	21771;21818;21866;21907;21952		114.94	90.27	1	1726100			14338	5716	8063	8063	18256;18257;18258;18259;18260	18257					0.033001262170728296
IFPLETPAF	9	Unmodified	_IFPLETPAF_					0	0	0		ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7816162109375	2	517.781493	1033.54843	0.48698	0.00025215	-0.10553	-5.4644E-05	0.38145	0.00019751	517.7812293866384	83.679	1.1022	83.662	83.16	84.263	-0.016823					123	48	3	0	0	0	0.00049634	5	21926	21792;21840;21882;21926;21971		129.2	104.53	1	1865700			14339	5716	8063	8063	18261;18262;18263;18264;18265	18264					0.033001262170728296
IFPMTVKTI	9	Unmodified	_IFPMTVKTI_					0	0	0		PCDHA2|p.V213Gfs*6|1|0.07|ENSG00000204969|chr5:140795601-140795602|-/GAAATAT|frameshift_variant;PCDHA2|p.V213Sfs*23|1|0.07|ENSG00000204969|chr5:140795600-140795601|-/TCATT|frameshift_variant;nc|ENSG00000204969|Q9Y5H9-3|PCDHA2;nc|ENSG00000204969|Q9Y5H9-2|PCDHA2;ENSG00000204969|ENST00000526136|PCDHA2	PCDHA2|p.V213Gfs*6|1|0.07|ENSG00000204969|chr5:140795601-140795602|-/GAAATAT|frameshift_variant	PCDHA2|p.V213Gfs*6|1|0.07|ENSG00000204969|chr5:140795601-140795602|-/GAAATAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.306640625	2	525.306821	1048.59909	0.50958	0.00026769	-0.6303	-0.0003311	-0.12072	-6.3416E-05	525.3061787371231	90.562	0.55589	90.652	90.309	90.865	0.090668					97	44	3	0	0	0	0.31763	1	23980	23980		6.2058	1.8765	1	260650			14340	8265	8064	8064	18266	18266					0.07673332270428546
IFQGNVHNF	9	Unmodified	_IFQGNVHNF_					0	0	0		ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40;ENST00000489853.1_1_1:31732921-31754364:-|nuORF	ENSG00000060688|ENST00000263694|SNRNP40	ENSG00000060688|ENST00000263694|SNRNP40	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8262329101562	2	538.269616	1074.52468	0.34933	0.00018804	-0.74878	-0.00040305	-0.39945	-0.00021501	538.2691929635141	42.098	0.26566	42.098	41.875	42.141	0					14	8	2	0	0	0	0.090484	1	9073	9073		54.774	28.432	1	205890			14341	750	8065	8065	18267	18267					-0.009602944967127769
IFQTQTSSV	9	Unmodified	_IFQTQTSSV_					0	0	0		ENSG00000162763|ENST00000294818|LRRC52	ENSG00000162763|ENST00000294818|LRRC52	ENSG00000162763|ENST00000294818|LRRC52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2823486328125	2	505.761289	1009.50803	0.45764	0.00023145	-1.775	-0.00089775	-1.3174	-0.00066629	505.76039370491526	45.473	0.34282	45.538	45.384	45.727	0.065048					18	12	2	0	0	0	0.10135	1	10168	10168		52.268	16.141	1	89509			14342	5613	8066	8066	18268	18268					0.0036515982667424396
IFRMMEKFV	9	Unmodified	_IFRMMEKFV_					0	0	0			REV__ENST00000420679.1_1_2:139308594-139326647:+|nuORF	REV__ENST00000420679.1_1_2:139308594-139326647:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.818115234375	2	600.81703	1199.61951	0.35588	0.00021382	1.212	0.00072821	1.5679	0.00094203	600.8181043437121	76.244	0.49047	76.297	75.992	76.482	0.053413					40	16	3	0	0	0	0.17787	2	19636	19636;19657		26.884	5.3467	1	502900	+		14343	16223	8067	8067	18269;18270	18269					0.027681796585966367
IFRRLDFWIS	10	Unmodified	_IFRRLDFWIS_					0	0	0		ENST00000394235.6_1_4:140058958-140060593:-|nuORF	ENST00000394235.6_1_4:140058958-140060593:-|nuORF	ENST00000394235.6_1_4:140058958-140060593:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7763671875	3	451.587307	1351.74009	0.24102	0.00010884	-0.44242	-0.00019979	-0.2014	-9.0949E-05	451.92139746658705	62.766	0.76065	62.862	62.495	63.256	0.095722					36	27	2	0	0	0	0.3179	1	15573	15573		8.9762	6.345	1	261780			14344	10066	8068	8068	18271	18271					0.07829046968095099
IFRRRWPRRFR	11	Unmodified	_IFRRRWPRRFR_					0	0	0		ENST00000575234.1_1_16:3355499-3356027:+|nuORF	ENST00000575234.1_1_16:3355499-3356027:+|nuORF	ENST00000575234.1_1_16:3355499-3356027:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.57025146484375	4	412.249826	1644.9702	-0.13915	-5.7365E-05	-0.27183	-0.00011206	-0.41098	-0.00016943	412.24915763460854	13.379	0.28692	13.28	13.129	13.416	-0.099291					19	9	3	0	0	0	0.33352	1	401	401		0	0	1	15890			14345	12047	8069	8069	18272	18272					0.17351318144210381
IFRRRWPRRFR	11	Unmodified	_IFRRRWPRRFR_					0	0	0		ENST00000575234.1_1_16:3355499-3356027:+|nuORF	ENST00000575234.1_1_16:3355499-3356027:+|nuORF	ENST00000575234.1_1_16:3355499-3356027:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		4	412.249826	1644.9702	-0.22012	-9.0745E-05	-2.4637	-0.0010157	-2.6839	-0.0011064	412.248608511424	13.465	0.16707	13.398	13.275	13.443	-0.067496	0.058938	-0.00055362	NaN	0	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21777			14346	12047	8069	8069							0.17351318144210381
IFSIKPLQF	9	Unmodified	_IFSIKPLQF_					0	0	0		nc|ENSG00000151233|Q4G148-2|GXYLT1;ENSG00000151233|ENST00000398675|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.3186645507812	2	546.826235	1091.63792	0.49306	0.00026962	-0.0056741	-3.1027E-06	0.48739	0.00026652	546.8260485019632	71.459	0.8356	71.459	71.128	71.963	0					52	29	2	0	0	0	9.2305E-05	1	18218	18218		142.08	67.657	1	2225100			14347	4947	8070	8070	18273	18273					0.0957638089644206
IFSIKPLQF	9	Unmodified	_IFSIKPLQF_					0	0	0		nc|ENSG00000151233|Q4G148-2|GXYLT1;ENSG00000151233|ENST00000398675|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.3185424804688	2	546.826235	1091.63792	0.55449	0.00030321	-0.079849	-4.3663E-05	0.47464	0.00025955	546.8260414320595	71.404	0.82678	71.462	71.208	72.035	0.05825					54	29	2	0	0	0	0.00045155	3	18195	18195;18268;18316		129.77	55.35	1	2467900			14348	4947	8070	8070	18274;18275;18276	18274					0.0957638089644206
IFSIKPLQF	9	Unmodified	_IFSIKPLQF_					0	0	0		nc|ENSG00000151233|Q4G148-2|GXYLT1;ENSG00000151233|ENST00000398675|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8370361328125	2	546.826235	1091.63792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.295	1	72.351	71.851	72.851	0.056572								0	0	0	0.12746	1	18413	18413		39.95	1.7985	1				14349	4947	8070	8070	18277	18277					0.0957638089644206
IFSIKPLQF	9	Unmodified	_IFSIKPLQF_					0	0	0		nc|ENSG00000151233|Q4G148-2|GXYLT1;ENSG00000151233|ENST00000398675|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.3184814453125	2	546.826235	1091.63792	0.646	0.00035325	-0.17052	-9.3242E-05	0.47548	0.00026001	546.8259485494074	71.548	0.85291	71.521	71.185	72.038	-0.027275					55	30	2	0	0	0	0.00045155	2	18220	18220;18290		129.77	55.35	1	3234500			14350	4947	8070	8070	18278;18279	18278					0.0957638089644206
IFSIKPLQF	9	Unmodified	_IFSIKPLQF_					0	0	0		nc|ENSG00000151233|Q4G148-2|GXYLT1;ENSG00000151233|ENST00000398675|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	nc|ENSG00000151233|Q4G148-2|GXYLT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8370971679688	2	546.826235	1091.63792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.429	1	72.401	71.901	72.901	-0.027275								0	0	0	0.16757	1	18449	18449		30.637	0.41173	1				14351	4947	8070	8070	18280	18280					0.0957638089644206
IFSPDDFL	8	Unmodified	_IFSPDDFL_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-2|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5	ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5	nc|ENSG00000249715|A0AVI2-4|FER1L5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.1796875	2	477.234376	952.454199	0.085469	4.0789E-05	-1.2074	-0.00057622	-1.122	-0.00053544	477.2335868717029	19.163	0.69745	19.047	18.708	19.405	-0.11592					38	24	3	0	0	0	0.34272	1	2106	2106		7.9102	2.6795	1	62036			14352	8586;12972	8071	8071	18281	18281					-0.023930126050458966
IFSPTSNLLLL	11	Unmodified	_IFSPTSNLLLL_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant;VPS13A|p.L1845Vfs*28|1|0.03|ENSG00000197969|chr9:77321285-77321286|-/GTACATT|frameshift_variant;VPS13A|p.Y1116Ifs*27|1|0.25|ENSG00000197969|chr9:77293345-77293345|T/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.3611450195312	2	609.360639	1216.70673	0.32705	0.00019929	0.25179	0.00015343	0.57884	0.00035272	609.3605518387121	92.128	0.70216	92.128	91.898	92.6	0					109	50	3	0	0	0	0.1175	1	24489	24489		38.615	14.825	1	286290			14353	8020	8072	8072	18282	18282					0.10704000405530678
IFSPTSNLLLL	11	Unmodified	_IFSPTSNLLLL_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant;VPS13A|p.L1845Vfs*28|1|0.03|ENSG00000197969|chr9:77321285-77321286|-/GTACATT|frameshift_variant;VPS13A|p.Y1116Ifs*27|1|0.25|ENSG00000197969|chr9:77293345-77293345|T/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.360595703125	2	609.360639	1216.70673	0.37713	0.00022981	0.29749	0.00018128	0.67462	0.00041108	609.3606420350162	92.045	0.53277	92.136	91.893	92.426	0.090668					83	35	3	0	0	0	0.2197	1	24448	24448		29.437	12.324	1	381480			14354	8020	8072	8072	18283	18283					0.10704000405530678
IFSPTSNLLLL	11	Unmodified	_IFSPTSNLLLL_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant;VPS13A|p.L1845Vfs*28|1|0.03|ENSG00000197969|chr9:77321285-77321286|-/GTACATT|frameshift_variant;VPS13A|p.Y1116Ifs*27|1|0.25|ENSG00000197969|chr9:77293345-77293345|T/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.3609008789062	2	609.360639	1216.70673	0.45922	0.00027983	0.45028	0.00027438	0.9095	0.00055422	609.3606571959237	92.101	0.55257	92.102	91.865	92.418	0.00047302					80	36	3	0	0	0	0.049742	1	24480	24480		53.317	26.093	1	297140			14355	8020	8072	8072	18284	18284					0.10704000405530678
IFSRIPALP	9	Unmodified	_IFSRIPALP_					0	0	0		ENST00000291281.8_3_19:47219703-47219850:-|nuORF;ENST00000433867.5_3_19:47219703-47220288:-|nuORF	ENST00000291281.8_3_19:47219703-47219850:-|nuORF	ENST00000291281.8_3_19:47219703-47219850:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.794921875	2	507.310752	1012.60695	0.36908	0.00018724	0.45662	0.00023165	0.8257	0.00041888	507.3108935998634	70.717	0.3386	70.692	70.466	70.804	-0.024864					16	11	2	0	0	0	0.2322	1	17892	17892		14.838	3.3436	1	75587			14356	9155	8073	8073	18285	18285					0.10115227582218722
IFSRIPALP	9	Unmodified	_IFSRIPALP_					0	0	0		ENST00000291281.8_3_19:47219703-47219850:-|nuORF;ENST00000433867.5_3_19:47219703-47220288:-|nuORF	ENST00000291281.8_3_19:47219703-47219850:-|nuORF	ENST00000291281.8_3_19:47219703-47219850:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.310752	1012.60695	0.33927	0.00017211	0.52883	0.00026828	0.8681	0.00044039	507.3112148103141	70.608	0.22361	70.608	70.46	70.683	0	-0.041982	3.8902E-05	NaN	14.838	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82965			14357	9155	8073	8073							0.10115227582218722
IFSTIYVHVF	10	Unmodified	_IFSTIYVHVF_					0	0	0			REV__ENSG00000163624|ENST00000295887|CDS1	REV__ENSG00000163624|ENST00000295887|CDS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.9010314941406	3	409.225375	1224.6543	-0.081039	-3.3163E-05	-2.2354	-0.00091478	-2.3164	-0.00094795	409.22469695315	43.116	0.79481	43.116	42.567	43.362	0					41	28	2	0	0	0	0.31267	1	9492	9492		8.9762	0	1	424520	+		14358	17071	8074	8074	18286	18286					0.05095462062558909
IFSWTNTQPV	10	Unmodified	_IFSWTNTQPV_					0	0	0			REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.2556762695312	2	596.803488	1191.59242	0.42873	0.00025587	1.4598	0.00087121	1.8885	0.0011271	596.8043477462851	74.146	1.4718	74.198	73.604	75.076	0.052361					75	51	2	0	0	0	0.28434	1	19113	19113		25.399	9.2502	1	655760	+		14359	15059	8075	8075	18287	18287					0.004291106434266112
IFTARLYYF	9	Unmodified	_IFTARLYYF_					0	0	0		ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000244509|ENST00000361441|APOBEC3C	ENSG00000128394|ENST00000308521|APOBEC3F	ENSG00000128394|ENST00000308521|APOBEC3F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.321533203125	2	597.321317	1192.62808	0.41525	0.00024804	-0.22075	-0.00013186	0.1945	0.00011618	597.321234317999	69.946	1.0153	69.946	69.618	70.633	0					92	36	4	0	0	0	0.0016361	3	17716	17673;17716;17771		114.65	78.143	1	1574400			14360	3367	8076	8076	18288;18289;18290	18289					0.03947192891064333
IFTARLYYF	9	Unmodified	_IFTARLYYF_					0	0	0		ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000244509|ENST00000361441|APOBEC3C	ENSG00000128394|ENST00000308521|APOBEC3F	ENSG00000128394|ENST00000308521|APOBEC3F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.321533203125	2	597.321317	1192.62808	0.42459	0.00025362	0.020765	1.2403E-05	0.44535	0.00026602	597.3212193016797	69.941	1.0849	70.007	69.664	70.749	0.06604					97	38	4	0	0	0	0.0042138	3	17716	17664;17716;17766		92.653	60.348	1	1446200			14361	3367	8076	8076	18291;18292;18293	18292					0.03947192891064333
IFTARLYYF	9	Unmodified	_IFTARLYYF_					0	0	0		ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000244509|ENST00000361441|APOBEC3C	ENSG00000128394|ENST00000308521|APOBEC3F	ENSG00000128394|ENST00000308521|APOBEC3F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.3214111328125	2	597.321317	1192.62808	0.3858	0.00023044	-0.06264	-3.7416E-05	0.32316	0.00019303	597.3212107176985	69.951	1.1292	69.929	69.591	70.721	-0.022087					108	40	4	0	0	0	0.0023784	3	17664	17664;17710;17763		107.19	73.085	1	1767300			14362	3367	8076	8076	18294;18295;18296	18294					0.03947192891064333
IFTAWRIL	8	Unmodified	_IFTAWRIL_					0	0	0		FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant;ENSG00000188352|ENST00000338382|FOCAD	FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant	FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.3088073730469	2	510.30547	1018.59639	0.56344	0.00028753	3.4695	0.0017705	4.0329	0.002058	510.3067818117861	77.132	1.6529	77.132	76.858	78.511	0					176	61	4	0	0	0	0.30517	1	19905	19905		30.225	1.738	1	6791900			14363	7745	8077	8077	18297	18297					0.08783244927803935
IFTAWRIL	8	Unmodified	_IFTAWRIL_					0	0	0		FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant;ENSG00000188352|ENST00000338382|FOCAD	FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant	FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.3088684082031	2	510.30547	1018.59639	0.45716	0.00023329	3.2113	0.0016388	3.6685	0.001872	510.3068662543206	77.049	1.6629	77.105	76.862	78.525	0.055412					117	59	2	0	0	0	0.30517	2	19844	19844;19893		30.225	1.738	1	5956000			14364	7745	8077	8077	18298;18299	18298					0.08783244927803935
IFTDLSSRF	9	Unmodified	_IFTDLSSRF_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.F192Sfs*8|1|0.15|ENSG00000079246|chr2:216122143-216122167|CTTTCCACTAAAAGGAATTACCGAA/-|frameshift_variant	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2855834960938	2	543.284931	1084.55531	0.57467	0.00031221	-0.51699	-0.00028087	0.057677	3.1335E-05	543.2847720649175	58.466	1.7689	58.466	58.075	59.844	0					144	61	3	0	0	0	3.9812E-06	1	14275	14275		160.69	46.041	1	12462000			14365	1126	8078	8078	18300	18300					0.016414390976706272
IFTDLSSRF	9	Unmodified	_IFTDLSSRF_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.F192Sfs*8|1|0.15|ENSG00000079246|chr2:216122143-216122167|CTTTCCACTAAAAGGAATTACCGAA/-|frameshift_variant	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2852783203125	2	543.284931	1084.55531	0.59448	0.00032297	-0.55106	-0.00029938	0.04342	2.359E-05	543.2847523756666	58.277	1.6771	58.362	57.945	59.622	0.085621					142	59	3	0	0	0	5.4053E-05	1	14154	14154		148.27	44.915	1	13015000			14366	1126	8078	8078	18301	18301					0.016414390976706272
IFTDLSSRF	9	Unmodified	_IFTDLSSRF_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.F192Sfs*8|1|0.15|ENSG00000079246|chr2:216122143-216122167|CTTTCCACTAAAAGGAATTACCGAA/-|frameshift_variant	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.7957153320312	2	543.284931	1084.55531	0.40253	0.00021869	-0.44096	-0.00023957	-0.038433	-2.088E-05	543.2849404226122	62.033	0.54956	62.025	61.728	62.278	-0.0085526					23	19	2	0	0	0	0.22143	1	15182	15182		19.362	4.5237	1	115340			14367	1126	8078	8078	18302	18302					0.016414390976706272
IFTDLSSRF	9	Unmodified	_IFTDLSSRF_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5|p.F192Sfs*8|1|0.15|ENSG00000079246|chr2:216122143-216122167|CTTTCCACTAAAAGGAATTACCGAA/-|frameshift_variant	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.284931	1084.55531	0.91398	0.00049655	-0.73577	-0.00039973	0.17821	9.682E-05	543.284624689025	58.512	1.7691	58.498	58.114	59.883	-0.014267	0.05564	-0.00014175	NaN	160.69	138	62	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14217000			14368	1126	8078	8078							0.016414390976706272
IFTDVALKF	9	Unmodified	_IFTDVALKF_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3031005859375	2	527.302593	1052.59063	0.51167	0.00026981	0.3217	0.00016963	0.83338	0.00043944	527.3026015720056	68.125	1.1596	68.125	67.878	69.037	0					79	42	3	0	0	0	9.2305E-05	1	17184	17184		142.08	79.507	1	617640			14369	3210	8079	8079	18303	18303					0.06644101625465737
IFTDVALKF	9	Unmodified	_IFTDVALKF_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3029174804688	2	527.302593	1052.59063	0.44934	0.00023694	0.25509	0.00013451	0.70442	0.00037144	527.3027159545154	68.114	1.0847	68.192	67.802	68.887	0.078041					69	39	3	0	0	0	0.0024096	1	17092	17092		106.94	52.167	1	551350			14370	3210	8079	8079	18304	18304					0.06644101625465737
IFTDVALKF	9	Unmodified	_IFTDVALKF_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3028564453125	2	527.302593	1052.59063	0.551	0.00029054	0.26573	0.00014012	0.81673	0.00043067	527.3026537196655	68.195	1.2213	68.176	67.782	69.003	-0.01915					63	43	2	0	0	0	0.00078391	1	17141	17141		125.53	65.455	1	633250			14371	3210	8079	8079	18305	18305					0.06644101625465737
IFTEKDEILS	10	Unmodified	_IFTEKDEILS_					0	0	0		nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000483778.5_1_2:242577129-242598587:+|nuORF;ENST00000465399.5_1_2:242577129-242594780:+|nuORF;ENST00000475195.5_1_2:242577129-242594181:+|nuORF;ENST00000494465.5_1_2:242577129-242592771:+|nuORF;ENST00000430617.6_3_2:242577147-242592771:+|nuORF	nc|ENSG00000168397|Q9Y4P1-6|ATG4B	nc|ENSG00000168397|Q9Y4P1-6|ATG4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.29638671875	2	597.816261	1193.61797	0.71378	0.00042671	-0.34587	-0.00020676	0.36791	0.00021995	597.8155969817572	78.68	0.36475	78.738	78.58	78.945	0.058151					17	13	2	0	0	0	0.3144	1	20353	20353		13.042	0.80181	1	84880			14372	6272	8080	8080	18306	18306					0.02890540375187811
IFTEKDEILS	10	Unmodified	_IFTEKDEILS_					0	0	0		nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000483778.5_1_2:242577129-242598587:+|nuORF;ENST00000465399.5_1_2:242577129-242594780:+|nuORF;ENST00000475195.5_1_2:242577129-242594181:+|nuORF;ENST00000494465.5_1_2:242577129-242592771:+|nuORF;ENST00000430617.6_3_2:242577147-242592771:+|nuORF	nc|ENSG00000168397|Q9Y4P1-6|ATG4B	nc|ENSG00000168397|Q9Y4P1-6|ATG4B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	597.816261	1193.61797	0.75273	0.00045	-0.77396	-0.00046268	-0.021224	-1.2688E-05	597.8153259548546	78.733	0.3431	78.733	78.586	78.929	0	-0.01972	-0.00064037	NaN	13.042	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103770			14373	6272	8080	8080							0.02890540375187811
IFTGQANFI	9	Unmodified	_IFTGQANFI_					0	0	0		nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	nc|ENSG00000080561|Q9UJV3-2|MID2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7693176269531	2	505.768917	1009.52328	0.68383	0.00034586	0.092081	4.6572E-05	0.77591	0.00039243	505.768961400339	45.857	0.46887	45.857	45.586	46.055	0					44	16	4	0	0	0	0.066761	1	10280	10280		56.177	0	1	519770			14374	1159	8081	8081	18307	18307					0.01890071414504746
IFTHCKQML	9	Unmodified	_IFTHCKQML_					0	0	0			REV__nc|ENSG00000125952|P61244-5|MAX	REV__nc|ENSG00000125952|P61244-5|MAX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.786376953125	2	560.78573	1119.55691	0.30826	0.00017287	0.48633	0.00027273	0.79459	0.00044559	560.7860444705943	70.648	0.38951	70.648	70.434	70.823	0					35	13	3	0	0	0	0.14076	1	17926	17926		32.305	3.811	1	636340	+		14375	22980	8082	8082	18308	18308					0.001910335904085514
IFTLEMFML	9	Unmodified	_IFTLEMFML_					0	0	0		ENST00000334529.9_1_3:112184817-112184898:-|nuORF	ENST00000334529.9_1_3:112184817-112184898:-|nuORF	ENST00000334529.9_1_3:112184817-112184898:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3246459960938	2	572.792689	1143.57083	0.37816	0.00021661	2.7934	0.0016	3.1716	0.0018167	572.794443391718	51.387	0.3684	51.387	51.139	51.508	0					17	13	2	0	0	0	0.21905	1	11972	11972		23.148	6.2061	1	198510			14376	9471	8083	8083	18309	18309					0.004782662988418451
IFTNTVARF	9	Unmodified	_IFTNTVARF_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.I1710*|1|0.31|ENSG00000023516|chr13:42308462-42308462|A/-|frameshift_variant	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7957763671875	2	534.795466	1067.57638	0.902	0.00048238	-0.23585	-0.00012613	0.66614	0.00035625	534.7953172673427	50.779	0.91755	50.779	50.489	51.406	0					85	33	4	0	0	0	0.00019464	2	11819	11775;11819		133.05	74.373	1	2743800			14377	24	8084	8084	18310;18311	18311					0.045294491971844764
IFTNTVARF	9	Unmodified	_IFTNTVARF_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.I1710*|1|0.31|ENSG00000023516|chr13:42308462-42308462|A/-|frameshift_variant	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.796142578125	2	534.795466	1067.57638	0.66114	0.00035358	-0.11037	-5.9026E-05	0.55077	0.00029455	534.7954395568588	50.758	1.0392	50.805	50.522	51.561	0.046574					86	38	4	0	0	0	0.00012746	4	11768	11768;11812;11901;11970		136.39	82.559	1	2763300			14378	24	8084	8084	18312;18313;18314;18315	18312					0.045294491971844764
IFTNTVARF	9	Unmodified	_IFTNTVARF_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.I1710*|1|0.31|ENSG00000023516|chr13:42308462-42308462|A/-|frameshift_variant	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7957763671875	2	534.795466	1067.57638	0.84327	0.00045098	-0.1398	-7.4766E-05	0.70347	0.00037621	534.7953490390033	50.825	0.93911	50.835	50.541	51.48	0.0095634					94	35	4	0	0	0	5.4053E-05	3	11785	11785;11829;11985		148.27	76.346	1	2594900			14379	24	8084	8084	18316;18317;18318	18316					0.045294491971844764
IFTPIVEHL	9	Unmodified	_IFTPIVEHL_					0	0	0		ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.8085327148438	2	534.808042	1067.60153	0.51175	0.00027369	-1.8979	-0.001015	-1.3861	-0.0007413	534.8076499765723	62.845	0.83728	62.845	62.552	63.389	0					64	30	4	0	0	0	0.044952	1	15536	15536		54.774	18.729	1	674820			14380	2689	8085	8085	18319	18319					0.07043503999761924
IFTPIVEHL	9	Unmodified	_IFTPIVEHL_					0	0	0		ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.80810546875	2	534.808042	1067.60153	0.39367	0.00021054	-1.5494	-0.00082862	-1.1557	-0.00061809	534.8077241606238	62.74	0.68056	62.835	62.602	63.282	0.095722					55	24	3	0	0	0	0.088391	1	15478	15478		39.957	10.876	1	551110			14381	2689	8085	8085	18320	18320					0.07043503999761924
IFTPIVEHL	9	Unmodified	_IFTPIVEHL_					0	0	0		ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.8082885742188	2	534.808042	1067.60153	0.42672	0.00022821	-1.7416	-0.00093142	-1.3149	-0.00070321	534.807691441998	62.797	0.85634	62.788	62.441	63.297	-0.0085526					69	31	3	0	0	0	0.044952	1	15512	15512		54.774	12.679	1	591570			14382	2689	8085	8085	18321	18321					0.07043503999761924
IFTRTFALV	9	Unmodified	_IFTRTFALV_					0	0	0			REV__ENST00000497850.5_1_X:102331220-102334875:-|nuORF	REV__ENST00000497850.5_1_X:102331220-102334875:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2986450195312	2	534.316035	1066.61752	0.46457	0.00024823	-0.90959	-0.00048601	-0.44502	-0.00023778	534.3151892798734	67.83	0.7021	67.908	67.382	68.084	0.078041					33	24	2	0	0	0	0.24688	1	17032	17032		14.838	2.3067	1	137040	+		14383	16379	8086	8086	18322	18322					0.08687210236666942
IFTSHKKLF	9	Unmodified	_IFTSHKKLF_					0	0	0			REV__nc|ENSG00000198298|Q8NCK3-2|ZNF485	REV__nc|ENSG00000198298|Q8NCK3-2|ZNF485	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2644653320312	2	560.829309	1119.64407	0.48228	0.00027047	0.41546	0.000233	0.89774	0.00050348	560.8292150234398	79.06	1.0725	79.06	78.725	79.797	0					111	43	3	0	0	0	0.24739	1	20699	20699		13.508	13.508	1	1544800	+		14384	18814	8087	8087	18323	18323					0.08902899127997443
IFTSHKKLF	9	Unmodified	_IFTSHKKLF_					0	0	0			REV__nc|ENSG00000198298|Q8NCK3-2|ZNF485	REV__nc|ENSG00000198298|Q8NCK3-2|ZNF485	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2643432617188	2	560.829309	1119.64407	0.50391	0.00028261	0.36117	0.00020255	0.86508	0.00048516	560.8291946782153	79.147	1.1443	79.118	78.716	79.861	-0.028931					116	46	3	0	0	0	0.24739	1	20702	20702		13.508	0.97634	1	1854200	+		14385	18814	8087	8087	18324	18324					0.08902899127997443
IFTSWTLV	8	Unmodified	_IFTSWTLV_					0	0	0		ENST00000433866.6_1_16:83845170-83845242:+|nuORF	ENST00000433866.6_1_16:83845170-83845242:+|nuORF	ENST00000433866.6_1_16:83845170-83845242:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7605285644531	2	483.768386	965.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.607	1	73.607	73.107	74.107	0								0	0	0	0.32762	1	18821	18821		24.674	1.5255	1				14386	10492	8088	8088	18325	18325					0.038078570456150374
IFTVNHKLLPV	11	Unmodified	_IFTVNHKLLPV_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.889892578125	2	640.889898	1279.76524	0.42081	0.0002697	-0.23574	-0.00015108	0.18508	0.00011861	640.889615570614	74.055	0.72828	74.107	73.825	74.554	0.052361					54	24	3	0	0	0	0.39802	1	18967	18967		11.495	0.67078	1	1976500			14387	3225	8089	8089	18326	18326					0.13655101770632427
IFTVNHKLLPV	11	Unmodified	_IFTVNHKLLPV_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.8900146484375	2	640.889898	1279.76524	0.51219	0.00032826	-0.25882	-0.00016588	0.25337	0.00016238	640.8896185179109	74.167	0.61861	74.136	73.91	74.529	-0.030663					47	21	3	0	0	0	0.39802	1	18991	18991		11.495	0.67078	1	1772400			14388	3225	8089	8089	18327	18327					0.13655101770632427
IFVARLYYF	9	Unmodified	_IFVARLYYF_					0	0	0		ENSG00000239713|ENST00000407997|APOBEC3G	ENSG00000239713|ENST00000407997|APOBEC3G	ENSG00000239713|ENST00000407997|APOBEC3G	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.2605590820312	2	596.331685	1190.64882	0.24882	0.00014838	-0.47726	-0.00028461	-0.22844	-0.00013623	596.3313094978723	73.573	0.52553	73.573	73.335	73.86	0					42	18	3	0	0	0	0.11486	1	18777	18777		39.957	23.808	1	342010			14389	8516	8090	8090	18328	18328					0.06111783270739579
IFVARLYYF	9	Unmodified	_IFVARLYYF_					0	0	0		ENSG00000239713|ENST00000407997|APOBEC3G	ENSG00000239713|ENST00000407997|APOBEC3G	ENSG00000239713|ENST00000407997|APOBEC3G	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.2606811523438	2	596.331685	1190.64882	0.3801	0.00022667	-0.4155	-0.00024778	-0.035404	-2.1112E-05	596.3311706973179	73.614	0.61815	73.667	73.308	73.926	0.052361					42	21	3	0	0	0	0.12846	1	18756	18756		44.407	25.15	1	318190			14390	8516	8090	8090	18329	18329					0.06111783270739579
IFVARLYYF	9	Unmodified	_IFVARLYYF_					0	0	0		ENSG00000239713|ENST00000407997|APOBEC3G	ENSG00000239713|ENST00000407997|APOBEC3G	ENSG00000239713|ENST00000407997|APOBEC3G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.33154296875	2	596.331685	1190.64882	0.34295	0.00020451	-0.6046	-0.00036054	-0.26165	-0.00015603	596.331053318582	73.679	0.45741	73.648	73.397	73.855	-0.030655					43	16	3	0	0	0	0.019896	1	18825	18825		64.236	32.968	1	388440			14391	8516	8090	8090	18330	18330					0.06111783270739579
IFVCPVFIL	9	Carbamidomethyl (C)	_IFVC(Carbamidomethyl (C))PVFIL_	IFVC(1)PVFIL		IFVC(56)PVFIL		0	1	0			REV__nc|ENSG00000182652|Q8NH05|OR4Q3	REV__nc|ENSG00000182652|Q8NH05|OR4Q3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3157348632812	2	554.317189	1106.61982	0.34861	0.00019324	-1.8938	-0.0010498	-1.5452	-0.00085654	554.3159743807121	70.812	1.0252	70.812	70.406	71.431	0					77	36	3	0	0	0	0.041522	1	17983	17983		56.048	19.582	1	1094000	+		14392	18208	8091	8091	18331	18331	28				0.0707792265009175
IFVCPVFIL	9	Carbamidomethyl (C)	_IFVC(Carbamidomethyl (C))PVFIL_	IFVC(1)PVFIL		IFVC(46)PVFIL		0	1	0			REV__nc|ENSG00000182652|Q8NH05|OR4Q3	REV__nc|ENSG00000182652|Q8NH05|OR4Q3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3162841796875	2	554.317189	1106.61982	0.36475	0.00020219	-1.8252	-0.0010117	-1.4604	-0.00080954	554.316061462662	70.833	0.80132	70.808	70.437	71.238	-0.024864					71	28	3	0	0	0	0.069231	1	18001	18001		45.75	9.2838	1	1107900	+		14393	18208	8091	8091	18332	18332	28				0.0707792265009175
IFVCPVFIL	9	Carbamidomethyl (C)	_IFVC(Carbamidomethyl (C))PVFIL_					0	1	0			REV__nc|ENSG00000182652|Q8NH05|OR4Q3	REV__nc|ENSG00000182652|Q8NH05|OR4Q3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	554.317189	1106.61982	0.34184	0.00018949	-1.8643	-0.0010334	-1.5225	-0.00084395	554.3160741075035	70.776	0.91711	70.837	70.406	71.323	0.060783	0.017661	-6.2251E-07	NaN	56.048	75	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1287800	+		14394	18208	8091	8091			28				0.0707792265009175
IFVCPVFIL	9	Carbamidomethyl (C)	_IFVC(Carbamidomethyl (C))PVFIL_					0	1	0			REV__nc|ENSG00000182652|Q8NH05|OR4Q3	REV__nc|ENSG00000182652|Q8NH05|OR4Q3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	554.317189	1106.61982	0.36475	0.00020219	-1.8252	-0.0010117	-1.4604	-0.00080954	554.316061462662	70.833	0.80132	70.808	70.437	71.238	-0.024864	-0.010912	4.2783E-05	NaN	56.048	71	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1107900	+		14395	18208	8091	8091			28				0.0707792265009175
IFVEELHNAF	10	Unmodified	_IFVEELHNAF_					0	0	0			REV__nc|ENSG00000186628|A1L4K1-2|FSD2	REV__nc|ENSG00000186628|A1L4K1-2|FSD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2315673828125	3	406.876634	1217.60807	-0.010201	-4.1507E-06	1.7702	0.00072023	1.7599	0.00071608	407.21063059024755	52.003	0.2693	52.053	51.985	52.254	0.050571					10	9	2	0	0	0	0.31482	1	12173	12173		6.6304	3.9991	1	50849	+		14396	18454	8092	8092	18333	18333					0.007973971604542385
IFVFFVDY	8	Unmodified	_IFVFFVDY_					0	0	0			REV__ENSG00000138600|ENST00000261854|SPPL2A	REV__ENSG00000138600|ENST00000261854|SPPL2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2692260742188	2	525.270761	1048.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.07	1	118.07	117.57	118.57	0								0	0	0	0.37992	1	30512	30512		0.79363	0	1		+		14397	15934	8093	8093	18334	18334					0.004647411883752284
IFVFFVDY	8	Unmodified	_IFVFFVDY_					0	0	0			REV__ENSG00000138600|ENST00000261854|SPPL2A	REV__ENSG00000138600|ENST00000261854|SPPL2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2697143554688	2	525.270761	1048.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.17	1	114.19	113.69	114.69	0.016708								0	0	0	0.37992	1	29696	29696		0.79363	0	1		+		14398	15934	8093	8093	18335	18335					0.004647411883752284
IFVFIGRIFV	10	Unmodified	_IFVFIGRIFV_					0	0	0			REV__ENST00000358746.6_1_5:94863784-94863832:-|nuORF	REV__ENST00000358746.6_1_5:94863784-94863832:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.8728637695312	2	605.870977	1209.7274	0.45358	0.00027481	0.71057	0.00043051	1.1641	0.00070532	605.8720821264902	90.195	1.6346	90.196	89.133	90.767	0.0003891					330	121	4	0	0	0	0.39745	1	23799	23799		3.9444	3.9444	1	1018300	+		14399	20237	8094	8094	18336	18336					0.13092635575821987
IFVHGESL	8	Unmodified	_IFVHGESL_					0	0	0		ACSL5|p.V586Ffs*30|1|0.03|ENSG00000197142|chr10:112426275-112426276|-/TTCTTTTCTCACCATATATTTTCAACACCCATGGAACT|frameshift_variant;nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;ENST00000496328.1_1_10:114181742-114186129:+|nuORF	ACSL5|p.V586Ffs*30|1|0.03|ENSG00000197142|chr10:112426275-112426276|-/TTCTTTTCTCACCATATATTTTCAACACCCATGGAACT|frameshift_variant	ACSL5|p.V586Ffs*30|1|0.03|ENSG00000197142|chr10:112426275-112426276|-/TTCTTTTCTCACCATATATTTTCAACACCCATGGAACT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7584228515625	2	451.242535	900.470518	0.26723	0.00012059	0.3689	0.00016646	0.63613	0.00028705	451.24283517258993	63.289	0.66544	63.385	63.016	63.681	0.095722					36	23	2	0	0	0	0.30517	1	15622	15622		30.225	0	1	182220			14400	6	8095	8095	18337	18337					0.016301133517231392
IFVILLTDAF	10	Unmodified	_IFVILLTDAF_					0	0	0			REV__ENST00000481278.5_1_1:165737892-165738015:-|nuORF	REV__ENST00000481278.5_1_1:165737892-165738015:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.79248046875	2	576.339175	1150.6638	0.3738	0.00021544	0.19449	0.00011209	0.5683	0.00032753	576.339255654793	73.123	0.42079	73.093	72.818	73.239	-0.029305					24	14	2	0	0	0	0.31482	1	18666	18666		11.64	0.81637	1	146590	+		14401	16154	8096	8096	18338	18338					0.09449230348059245
IFVITHHLL	9	Unmodified	_IFVITHHLL_					0	0	0		ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.2802124023438	2	546.831852	1091.64915	0.59998	0.00032809	-1.5744	-0.00086096	-0.97446	-0.00053287	546.8307931799849	53.376	0.25996	53.432	53.3	53.56	0.056259					14	9	2	0	0	0	0.2451	1	12585	12585		15.847	1.2655	1	245280			14402	5836	8097	8097	18339	18339					0.10699202990599588
IFVLMLPFL	9	Unmodified	_IFVLMLPFL_					0	0	0			REV__ENSG00000185231|ENST00000327606|MC2R	REV__ENSG00000185231|ENST00000327606|MC2R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2799682617188	2	546.829932	1091.64531	0.5665	0.00030978	1.9636	0.0010738	2.5301	0.0013836	546.8308256188482	53.344	0.39341	53.344	53.228	53.622	0					20	14	2	0	0	0	0.22431	1	12635	12635		14.582	3.7578	1	245160	+		14403	18365	8098	8098	18340	18340					0.10315397172530538
IFVTGGSLRF	10	Unmodified	_IFVTGGSLRF_					0	0	0		ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2341918945312	2	548.811116	1095.60768	0.34945	0.00019178	-0.28743	-0.00015775	0.062013	3.4034E-05	548.810791522845	61.895	0.77355	61.895	61.677	62.45	0					38	28	2	0	0	0	0.28108	1	15306	15306		28.495	9.0555	1	197820			14404	7097	8099	8099	18341	18341					0.0637002223129457
IFVTGGSLRF	10	Unmodified	_IFVTGGSLRF_					0	0	0		ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2341918945312	2	548.811116	1095.60768	0.20764	0.00011395	0.66594	0.00036547	0.87357	0.00047943	548.8113012643136	62.05	0.71753	62.147	61.615	62.332	0.096985					32	25	2	0	0	0	0.30076	1	15293	15293		22.658	7.4096	1	140260			14405	7097	8099	8099	18342	18342					0.0637002223129457
IFVTGGSLRF	10	Unmodified	_IFVTGGSLRF_					0	0	0		ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2341918945312	2	548.811116	1095.60768	0.28268	0.00015514	0.49027	0.00026907	0.77295	0.0004242	548.8113248400335	62.116	0.82424	62.108	61.528	62.353	-0.0085526					45	29	2	0	0	0	0.28108	1	15298	15298		28.495	11.382	1	184840			14406	7097	8099	8099	18343	18343					0.0637002223129457
IFWFHLPEIYF	11	Unmodified	_IFWFHLPEIYF_					0	0	0		nc|ENSG00000205494|A6NMU1|OR52A4P	nc|ENSG00000205494|A6NMU1|OR52A4P	nc|ENSG00000205494|A6NMU1|OR52A4P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2803649902344	3	504.595579	1510.76491	0.30682	0.00015482	0.703	0.00035473	1.0098	0.00050955	504.5958613663724	91.916	0.16271	92.007	91.908	92.071	0.090675					12	8	2	0	0	0	0.33326	1	24396	24396		1.4551	0.94916	1	90205			14407	12912	8100	8100	18344	18344					0.029956820507777593
IFWFSNLF	8	Unmodified	_IFWFSNLF_					0	0	0			REV__ENST00000478361.6_1_10:94234505-94239065:-|nuORF	REV__ENST00000478361.6_1_10:94234505-94239065:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2871704101562	2	537.276378	1072.5382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.35	1	87.437	86.937	87.937	0.08709								0	0	0	0.32762	1	23022	23022		24.674	3.8027	1		+		14408	21449	8101	8101	18345	18345					0.004835632825006542
IFYFLLDY	8	Unmodified	_IFYFLLDY_					0	0	0			REV__ENSG00000123104|ENST00000381340|ITPR2	REV__ENSG00000123104|ENST00000381340|ITPR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8368530273438	2	547.283869	1092.55318	0.50213	0.00027481	-4.4669	-0.0024446	-3.9647	-0.0021698	547.2814348118574	71.978	0.60208	71.978	71.639	72.241	0					36	21	2	0	0	0	0.33618	1	18345	18345		17.087	7.7391	1	125780	+		14409	15178	8102	8102	18346	18346					0.010610103598764908
IFYSGMKELQ	10	Unmodified	_IFYSGMKELQ_					0	0	0			REV__ENST00000466270.5_1_10:126447884-126448055:-|nuORF	REV__ENST00000466270.5_1_10:126447884-126448055:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2468566894531	3	405.874125	1214.60055	-0.28001	-0.00011365	4.2571	0.0017279	3.9771	0.0016142	406.20871245870114	17.615	0.10092	17.497	17.414	17.515	-0.11739					5	3	2	0	0	0	0.32068	1	1668	1668		3.5871	1.0886	1	6273.2	+		14410	21284	8103	8103	18347	18347					0.0018292156855750363
IFYSKPQL	8	Unmodified	_IFYSKPQL_					0	0	0		ENSG00000113300|ENST00000261951|CNOT6	ENSG00000113300|ENST00000261951|CNOT6	ENSG00000113300|ENST00000261951|CNOT6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.755615234375	2	498.28166	994.548768	0.38826	0.00019346	0.25047	0.00012481	0.63873	0.00031827	498.2817040295521	70.292	1.0621	70.27	69.965	71.027	-0.022713					90	37	4	0	0	0	0.33245	1	17978	17978		19.439	0	1	1351700			14411	2489	8104	8104	18348	18348					0.051275459369549026
IFYSKPQL	8	Unmodified	_IFYSKPQL_					0	0	0		ENSG00000113300|ENST00000261951|CNOT6	ENSG00000113300|ENST00000261951|CNOT6	ENSG00000113300|ENST00000261951|CNOT6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	498.28166	994.548768	0.40184	0.00020023	0.23068	0.00011495	0.63253	0.00031518	498.281671453263	70.218	1.0938	70.218	69.869	70.963	0	-0.038237	5.6736E-06	NaN	13.508	96	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1302100			14412	2489	8104	8104							0.051275459369549026
IFYTVFTPV	9	Unmodified	_IFYTVFTPV_					0	0	0		ENSG00000176281|ENST00000315915|OR4K5	ENSG00000176281|ENST00000315915|OR4K5	ENSG00000176281|ENST00000315915|OR4K5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.26904296875	2	543.797143	1085.57973	0.64472	0.0003506	0.2372	0.00012899	0.88192	0.00047959	543.797022271602	89.332	0.86281	89.423	89.073	89.936	0.090569					102	56	3	0	0	0	0.25417	1	23697	23697		8.5933	0	1	390390			14413	6916	8105	8105	18349	18349					0.04036699251173559
IGALAPNVPS	10	Unmodified	_IGALAPNVPS_					0	0	0			REV__nc|ENSG00000110042|Q9Y2E6-2|DTX4	REV__nc|ENSG00000110042|Q9Y2E6-2|DTX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7689514160156	2	469.768917	937.523281	-0.1295	-6.0834E-05	0.61713	0.00028991	0.48763	0.00022907	469.76904955918627	23.408	0.53632	23.408	23.197	23.734	0					37	18	3	0	0	0	0.27059	1	3449	3449		24.021	2.4836	1	142730	+		14414	14659	8106	8106	18350	18350					0.0520207141452147
IGALAPNVPS	10	Unmodified	_IGALAPNVPS_					0	0	0			REV__nc|ENSG00000110042|Q9Y2E6-2|DTX4	REV__nc|ENSG00000110042|Q9Y2E6-2|DTX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.76910400390625	2	469.768917	937.523281	-0.0071723	-3.3693E-06	0.40983	0.00019252	0.40266	0.00018915	469.7689812728628	23.522	0.61137	23.449	23.18	23.791	-0.072559					40	21	3	0	0	0	0.31867	1	3472	3472		18.146	2.8979	1	179300	+		14415	14659	8106	8106	18351	18351					0.0520207141452147
IGALAPNVPS	10	Unmodified	_IGALAPNVPS_					0	0	0			REV__nc|ENSG00000110042|Q9Y2E6-2|DTX4	REV__nc|ENSG00000110042|Q9Y2E6-2|DTX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7690734863281	2	469.768917	937.523281	0.24148	0.00011344	-0.0094145	-4.4226E-06	0.23207	0.00010902	469.76879890242077	23.479	0.6454	23.44	23.202	23.848	-0.038927					46	22	3	0	0	0	0.27059	1	3479	3479		24.021	1.2843	1	159240	+		14416	14659	8106	8106	18352	18352					0.0520207141452147
IGALDARLI	9	Unmodified	_IGALDARLI_					0	0	0			REV__ENST00000443526.5_1_7:99950215-99952796:+|nuORF	REV__ENST00000443526.5_1_7:99950215-99952796:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2926330566406	2	471.292559	940.570566	0.035372	1.6671E-05	0.24743	0.00011661	0.28281	0.00013328	471.2926112688346	42.852	1.2503	42.852	42.543	43.793	0					109	45	4	0	0	0	0.041175	1	9409	9409		56.177	0	1	6480700	+		14417	19037	8107	8107	18353	18353					0.09790350685523208
IGANKVLIQ	9	Unmodified	_IGANKVLIQ_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.8028564453125	2	478.300384	954.586216	0.51048	0.00024416	-0.55961	-0.00026766	-0.049127	-2.3497E-05	478.3000043932595	45.637	0.49783	45.637	45.476	45.974	0					27	17	2	0	0	0	0.17611	1	10172	10172		26.884	0	1	830350	+		14418	15354	8108	8108	18354	18354					0.10710637202555517
IGDLLEFDV	9	Unmodified	_IGDLLEFDV_					0	0	0			REV__nc|ENSG00000012779|P09917-5|ALOX5	REV__nc|ENSG00000012779|P09917-5|ALOX5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.28887939453125	2	510.76604	1019.51753	-0.084577	-4.3199E-05	1.0351	0.00052868	0.9505	0.00048548	510.7665380264566	13.386	0.58964	13.287	13.129	13.718	-0.099291					44	20	4	0	0	0	0.25066	1	423	423		11.64	0	1	468070	+		14419	13441	8109	8109	18355	18355					0.00854928112187281
IGDQGIYNYLF	11	Unmodified	_IGDQGIYNYLF_					0	0	0			REV__nc|ENSG00000134955|Q8TED4-2|SLC37A2	REV__nc|ENSG00000134955|Q8TED4-2|SLC37A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.8821105957031	3	434.883677	1301.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.809	1	24.753	24.253	25.253	-0.055931								0	0	0	0.37452	1	3865	3865		2.8433	0.21205	1		+		14420	15713	8110	8110	18356	18356					-0.009546375306854316
IGEKNRVP	8	Unmodified	_IGEKNRVP_					0	0	0			REV__ENSG00000204856|ENST00000377673|FAM216A	REV__ENSG00000204856|ENST00000377673|FAM216A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.30108642578125	2	456.766709	911.518865	-0.099334	-4.5372E-05	-0.1299	-5.9336E-05	-0.22924	-0.00010471	456.766678261088	28.295	0.65958	28.291	27.94	28.599	-0.0042572					37	23	2	0	0	0	0.34319	1	4925	4925		5.7604	0	1	144320	+		14421	18968	8111	8111	18357	18357					0.05956606991605895
IGEKRRIV	8	Unmodified	_IGEKRRIV_					0	0	0		ENST00000494374.5_1_7:32997059-33028356:+|nuORF;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000489038.5_1_7:33016023-33032371:+|nuORF;nc|ENSG00000122642|O95302-2|FKBP9	ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENST00000494374.5_1_7:32997059-33028356:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2564392089844	2	485.811451	969.608348	0.19951	9.6926E-05	0.21597	0.00010492	0.41548	0.00020185	485.8113647444658	31.023	0.2986	31.05	30.893	31.192	0.027157					14	10	2	0	0	0	0.3366	1	5761	5761		18.135	10.846	1	64553			14422	3056	8112	8112	18358	18358					0.12232861670986495
IGESTVRDIKK	11	Unmodified	_IGESTVRDIKK_					0	0	0		ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.18292236328125	3	415.910227	1244.70885	-0.20407	-8.4875E-05	-3.0054	-0.00125	-3.2094	-0.0013348	415.9092296890603	25.073	0.37431	25.042	24.862	25.237	-0.031408					15	12	2	0	0	0	0.33236	1	3932	3932		2.4348	0.69251	1	59836			14423	7182	8113	8113	18359	18359					0.096284291432994
IGEVVALGL	9	Unmodified	_IGEVVALGL_					0	0	0		ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.77398681640625	2	435.768386	869.522219	-0.068499	-2.985E-05	-0.39738	-0.00017317	-0.46588	-0.00020302	435.76812954780974	66.914	0.56266	66.914	66.63	67.193	0					51	19	3	0	0	0	0.013276	3	16853	16840;16853;16859		74.396	3.6808	1	1162300			14424	7162	8114	8114	18360;18361;18362	18361					0.08223857045607019
IGEVVALGL	9	Unmodified	_IGEVVALGL_					0	0	0		ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.76708984375	2	435.768386	869.522219	-0.014506	-6.321E-06	-0.50514	-0.00022013	-0.51965	-0.00022645	435.767999658969	66.823	0.64706	66.907	66.572	67.219	0.083832					67	22	4	0	0	0	0.021303	3	16798	16798;16815;16823		63.563	3.1733	1	1278100			14425	7162	8114	8114	18363;18364;18365	18363					0.08223857045607019
IGEVVALGL	9	Unmodified	_IGEVVALGL_					0	0	0		ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.7745361328125	2	435.768386	869.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.284	1	67.362	66.862	67.862	0.078041								0	0	0	0.074381	1	16879	16879		53.576	11.481	1				14426	7162	8114	8114	18366	18366					0.08223857045607019
IGEVVALGL	9	Unmodified	_IGEVVALGL_					0	0	0		ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.7669982910156	2	435.768386	869.522219	-0.21861	-9.5263E-05	-0.31663	-0.00013798	-0.53524	-0.00023324	435.7681377756292	66.955	0.57924	66.941	66.634	67.213	-0.013588					52	20	3	0	0	0	0.021303	2	16827	16827;16847		63.563	3.1733	1	1166800			14427	7162	8114	8114	18367;18368	18367					0.08223857045607019
IGFGSLLRCF	10	Unmodified	_IGFGSLLRCF_					0	0	0			REV__SV2C|p.S634Ifs*22|1|0.13|ENSG00000122012|chr5:76301442-76301443|-/A|frameshift_variant	REV__SV2C|p.S634Ifs*22|1|0.13|ENSG00000122012|chr5:76301442-76301443|-/A|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8091430664062	2	556.799694	1111.58484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.488	1	80.553	80.053	81.053	0.065094								0	0	0	0.36126	1	20911	20911		10.074	2.1638	1		+		14428	15143	8115	8115	18369	18369					0.03350679842151294
IGGAGGHHHE	10	Unmodified	_IGGAGGHHHE_					0	0	0		ENST00000532027.5_1_11:6565893-6566254:+|nuORF	ENST00000532027.5_1_11:6565893-6566254:+|nuORF	ENST00000532027.5_1_11:6565893-6566254:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.290771484375	2	486.225739	970.436926	0.28259	0.0001374	-1.4689	-0.00071424	-1.1864	-0.00057684	486.2249326467148	20.343	0.47053	20.343	20.18	20.65	0					24	16	2	0	0	0	0.31395	1	2567	2567		12.532	5.2423	1	60704			14429	11632	8116	8116	18370	18370					-0.049474953674803146
IGGAGGHHHE	10	Unmodified	_IGGAGGHHHE_					0	0	0		ENST00000532027.5_1_11:6565893-6566254:+|nuORF	ENST00000532027.5_1_11:6565893-6566254:+|nuORF	ENST00000532027.5_1_11:6565893-6566254:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2907409667969	2	486.225739	970.436926	0.5973	0.00029042	-1.7411	-0.00084658	-1.1438	-0.00055616	486.2247285277783	20.445	0.44849	20.392	20.275	20.723	-0.052912					25	15	2	0	0	0	0.31745	1	2596	2596		7.9102	0.62092	1	80646			14430	11632	8116	8116	18371	18371					-0.049474953674803146
IGGEALIKAF	10	Unmodified	_IGGEALIKAF_					0	0	0			REV__nc|ENSG00000153291|O95847-2|SLC25A27	REV__nc|ENSG00000153291|O95847-2|SLC25A27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7982177734375	2	509.800217	1017.58588	0.34595	0.00017637	0.16468	8.3952E-05	0.51063	0.00026032	509.8002577607538	52.372	0.92487	52.423	52.036	52.96	0.050571					100	31	4	0	0	0	0.33817	1	12254	12254		14.838	1.3304	1	7121900	+		14431	16622	8117	8117	18372	18372					0.07779217482720924
IGGNKLPH	8	Unmodified	_IGGNKLPH_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.578369140625	2	418.24287	834.471186	-0.028661	-1.1987E-05	-0.40722	-0.00017032	-0.43588	-0.00018231	418.24257467725084	23.118	1.5743	23.031	22.435	24.009	-0.087608					68	55	2	0	0	0	0.33245	1	3450	3450		19.439	3.6708	1	136860	+		14432	18241	8118	8118	18373	18373					0.047329527914257596
IGHYYLLM	8	Unmodified	_IGHYYLLM_					0	0	0			REV__ENST00000446828.5_1_3:185003371-185161391:+|nuORF	REV__ENST00000446828.5_1_3:185003371-185161391:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.8091735839844	2	505.262413	1008.51027	0.07745	3.9133E-05	0.089529	4.5236E-05	0.16698	8.4368E-05	505.26272991796907	31.121	0.41276	31.148	30.841	31.253	0.027946					19	14	2	0	0	0	0.34147	1	5728	5728		11.114	3.2043	1	97481	+		14433	21085	8119	8119	18374	18374					0.006359170307632667
IGIDALLEL	9	Unmodified	_IGIDALLEL_					0	0	0		ENSG00000118507|ENST00000431975|AKAP7;ENST00000543815.5_1_6:131486241-131540820:+|nuORF	ENSG00000118507|ENST00000431975|AKAP7	ENSG00000118507|ENST00000431975|AKAP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7794189453125	2	478.786776	955.558998	0.06512	3.1178E-05	2.3602	0.00113	2.4254	0.0011612	478.7877063437601	42.728	0.41282	42.728	42.595	43.008	0					25	14	2	0	0	0	0.20344	1	9326	9326		23.148	0	1	461360			14434	2829	8120	8120	18375	18375					0.0794410887151571
IGIDALLEL	9	Unmodified	_IGIDALLEL_					0	0	0		ENSG00000118507|ENST00000431975|AKAP7;ENST00000543815.5_1_6:131486241-131540820:+|nuORF	ENSG00000118507|ENST00000431975|AKAP7	ENSG00000118507|ENST00000431975|AKAP7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7797546386719	2	478.786776	955.558998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.627	1	42.712	42.212	43.212	0.085197								0	0	0	0.20238	1	9291	9291		21.747	1.293	1				14435	2829	8120	8120	18376	18376					0.0794410887151571
IGIDALLEL	9	Unmodified	_IGIDALLEL_					0	0	0		ENSG00000118507|ENST00000431975|AKAP7;ENST00000543815.5_1_6:131486241-131540820:+|nuORF	ENSG00000118507|ENST00000431975|AKAP7	ENSG00000118507|ENST00000431975|AKAP7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	478.786776	955.558998	0.15161	7.2591E-05	1.4749	0.00070615	1.6265	0.00077875	478.7874009953744	42.476	0.24481	42.567	42.527	42.772	0.091362	-0.080528	-0.00046259	NaN	23.148	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248060			14436	2829	8120	8120							0.0794410887151571
IGIGIGNADIT	11	Unmodified	_IGIGIGNADIT_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2835083007812	2	522.290214	1042.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.498	1	54.498	53.998	54.998	0								0	0	0	0.30488	1	12946	12946		18.146	1.0335	1				14437	5669	8121	8121	18377	18377					0.04629421752088092
IGILCLPLF	9	Unmodified	_IGILCLPLF_					0	0	0		ENSG00000198398|ENST00000354905|TMEM207	ENSG00000198398|ENST00000354905|TMEM207	ENSG00000198398|ENST00000354905|TMEM207	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7982177734375	2	494.798632	987.582711	0.39858	0.00019722	-0.27364	-0.0001354	0.12494	6.1818E-05	494.79831672026955	79.884	0.88776	79.884	79.55	80.438	0					55	33	2	0	0	0	0.29662	1	20722	20722		9.3474	2.0582	1	298300			14438	8069	8122	8122	18378	18378					0.08842251104363186
IGIQVVISK	9	Unmodified	_IGIQVVISK_					0	0	0			REV__ENSG00000163013|ENST00000520530|FBXO41	REV__ENSG00000163013|ENST00000520530|FBXO41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.8106384277344	2	478.810585	955.606617	0.3668	0.00017563	-0.30115	-0.00014419	0.065653	3.1435E-05	478.8104119220667	44.725	0.55358	44.794	44.54	45.093	0.068569					49	19	3	0	0	0	0.12563	1	9958	9958		47.749	0	1	1191900	+		14439	17031	8123	8123	18379	18379					0.12703807862374106
IGIWDKRRPI	10	Unmodified	_IGIWDKRRPI_					0	0	0			REV__ENST00000510356.5_1_17:46908399-46919258:+|nuORF	REV__ENST00000510356.5_1_17:46908399-46919258:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2335510253906	3	418.587418	1252.74043	0.012317	5.1558E-06	-0.90973	-0.0003808	-0.89741	-0.00037565	418.58690771117574	33.192	0.49465	33.246	33.042	33.537	0.054371					34	17	3	0	0	0	0.31942	1	6448	6448		6.1918	1.1443	1	361830	+		14440	15808	8124	8124	18380	18380					0.1241646668793237
IGIWLQPLIW	10	Unmodified	_IGIWLQPLIW_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8684692382812	2	619.868434	1237.72232	-0.082645	-5.1229E-05	0.8767	0.00054344	0.79405	0.00049221	619.8685964531223	98.448	0.17005	98.51	98.402	98.572	0.061523					29	19	2	0	0	0	0.40888	1	26345	26345		1.8442	0.36234	1	136350	+		14441	14227	8125	8125	18381	18381					0.11296331713219843
IGKLNMIL	8	Unmodified	_IGKLNMIL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF;XPO1|p.F287Lfs*3|1|0.34|ENSG00000082898|chr2:61496906-61496906|A/-|frameshift_variant	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.26220703125	2	451.280606	900.546659	0.23146	0.00010445	-1.4343	-0.00064729	-1.2029	-0.00054284	451.27994939690996	29.975	0.42682	29.988	29.803	30.23	0.012266					23	14	3	0	0	0	0.33995	1	5403	5403		15.768	1.1865	1	338240			14442	1211	8126	8126	18382	18382					0.09240793927506274
IGKLYPLVK	9	Unmodified	_IGKLYPLVK_					0	0	0			REV__ENST00000523504.5_1_8:22880186-22926453:-|nuORF	REV__ENST00000523504.5_1_8:22880186-22926453:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2507934570312	2	515.836603	1029.65865	0.32088	0.00016552	-0.10961	-5.6543E-05	0.21127	0.00010898	515.8364849568655	43.313	0.59423	43.313	43.008	43.602	0					46	21	3	0	0	0	0.25706	1	9413	9413		6.7232	2.3939	1	624410	+		14443	15098	8127	8127	18383	18383					0.14500971276129349
IGKPLKGP	8	Unmodified	_IGKPLKGP_					0	0	0			REV__NOP2|p.H441Afs*36|1|0.29|ENSG00000111641|chr12:6560961-6560962|-/AT|frameshift_variant	REV__NOP2|p.H441Afs*36|1|0.29|ENSG00000111641|chr12:6560961-6560962|-/AT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5717468261719	2	405.265813	808.517074	-0.16983	-6.8827E-05	-0.015049	-6.0989E-06	-0.18488	-7.4926E-05	405.265605342701	33.12	0.61213	33.175	32.973	33.585	0.055309					29	21	2	0	0	0	0.33245	1	6330	6330		19.439	10.846	1	60648	+		14444	14727	8128	8128	18384	18384					0.1051559797366508
IGLLWRFPPF	10	Unmodified	_IGLLWRFPPF_					0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.18292236328125	3	415.90961	1244.707	0.10141	4.2179E-05	-0.71333	-0.00029668	-0.61192	-0.0002545	415.90943192733897	25.126	0.43768	25.07	24.748	25.186	-0.055931					19	15	2	0	0	0	0.31911	1	3953	3953		3.8763	0.28927	1	50312	+		14445	21195	8129	8129	18385	18385					0.0944346491601209
IGLLYLERDFK	11	Unmodified	_IGLLYLERDFK_					0	0	0			REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.92193603515625	3	456.262489	1365.76564	0.19848	9.0559E-05	0.87042	0.00039714	1.0689	0.0004877	456.262747321564	75.188	0.51488	75.188	74.934	75.449	0					43	18	3	0	0	0	0.28064	2	19324	19324;19330		23.964	9.0138	1	421170	+		14446	16424	8130	8130	18386;18387	18386					0.09738476699840248
IGLLYLERDFK	11	Unmodified	_IGLLYLERDFK_					0	0	0			REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.9217834472656	3	456.262489	1365.76564	0.20125	9.1824E-05	1.2836	0.00058566	1.4849	0.00067749	456.26335326378904	75.13	0.48456	75.183	75.051	75.536	0.052361					35	17	3	0	0	0	0.258	1	19275	19275		25.997	8.1342	1	510770	+		14447	16424	8130	8130	18388	18388					0.09738476699840248
IGLLYLERDFK	11	Unmodified	_IGLLYLERDFK_					0	0	0			REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.9215087890625	3	456.262489	1365.76564	0.38584	0.00017605	-0.31788	-0.00014504	0.067965	3.101E-05	456.26255569617905	75.26	0.52078	75.229	75.005	75.525	-0.031479					48	19	3	0	0	0	0.33432	1	19300	19300		19.144	6.9164	1	378280	+		14448	16424	8130	8130	18389	18389					0.09738476699840248
IGLLYLERDFK	11	Unmodified	_IGLLYLERDFK_					0	0	0			REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	456.262489	1365.76564	0.20125	9.1824E-05	1.2836	0.00058566	1.4849	0.00067749	456.26335326378904	75.13	0.48456	75.183	75.051	75.536	0.052361	-0.016923	0.00079405	NaN	25.997	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	510770	+		14449	16424	8130	8130							0.09738476699840248
IGLLYLERDFK	11	Unmodified	_IGLLYLERDFK_					0	0	0			REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	456.262489	1365.76564	0.38584	0.00017605	-0.31788	-0.00014504	0.067965	3.101E-05	456.26255569617905	75.26	0.52078	75.229	75.005	75.525	-0.031479	0.028905	-0.001398	NaN	25.997	48	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378280	+		14450	16424	8130	8130							0.09738476699840248
IGLSPYTFPQK	11	Unmodified	_IGLSPYTFPQK_					0	0	0		nc|ENSG00000164741|Q96QB1-3|DLC1	nc|ENSG00000164741|Q96QB1-3|DLC1	nc|ENSG00000164741|Q96QB1-3|DLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.8429565429688	2	625.842613	1249.67067	0.10403	6.5103E-05	0.82191	0.00051439	0.92594	0.00057949	625.8432631051721	65.218	0.5294	65.218	65.047	65.577	0					43	18	3	0	0	0	0.36266	1	16275	16275		24.882	5.5196	1	723960			14451	12807	8131	8131	18390	18390					0.05582543228638315
IGLTAFQTF	9	Unmodified	_IGLTAFQTF_					0	0	0			REV__Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|117|1|anti-sense	REV__Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|117|1|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2615051269531	2	499.271293	996.528032	0.57866	0.00028891	0.69076	0.00034488	1.2694	0.00063379	499.2713684484769	48.131	0.71667	48.174	47.926	48.643	0.04332					75	26	5	0	0	0	0.18803	1	10951	10951		25.399	3.6527	1	2950500	+		14452	22722	8132	8132	18391	18391					0.02962955557291025
IGMEKFFNI	9	Oxidation (M)	_IGM(Oxidation (M))EKFFNI_		IGM(1)EKFFNI		IGM(59)EKFFNI	0	0	1		ENST00000556771.5_1_14:64906939-64911458:+|nuORF;ENSG00000100714|ENST00000652337|MTHFD1;ENSG00000120254|ENST00000367321|MTHFD1L	ENST00000556771.5_1_14:64906939-64911458:+|nuORF	ENST00000556771.5_1_14:64906939-64911458:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7835693359375	2	557.78371	1113.55287	0.29949	0.00016705	-0.81977	-0.00045726	-0.52029	-0.00029021	557.7831601706079	58.904	0.64067	58.904	58.739	59.38	0					56	22	3	0	0	0	0.032589	1	14321	14321		59.368	28.1	1	808060			14453	1624	8133	8133	18392	18392		200			0.0006326736834125768
IGMEKFFNI	9	Oxidation (M)	_IGM(Oxidation (M))EKFFNI_		IGM(1)EKFFNI		IGM(62)EKFFNI	0	0	1		ENST00000556771.5_1_14:64906939-64911458:+|nuORF;ENSG00000100714|ENST00000652337|MTHFD1;ENSG00000120254|ENST00000367321|MTHFD1L	ENST00000556771.5_1_14:64906939-64911458:+|nuORF	ENST00000556771.5_1_14:64906939-64911458:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.783203125	2	557.78371	1113.55287	0.38364	0.00021399	-0.9005	-0.00050228	-0.51686	-0.0002883	557.7831317841398	58.772	0.73489	58.864	58.586	59.321	0.091305					39	25	2	0	0	0	0.026579	2	14294	14248;14294		61.602	30.334	1	680770			14454	1624	8133	8133	18393;18394	18394		200			0.0006326736834125768
IGMEKFFNI	9	Oxidation (M)	_IGM(Oxidation (M))EKFFNI_		IGM(1)EKFFNI		IGM(62)EKFFNI	0	0	1		ENST00000556771.5_1_14:64906939-64911458:+|nuORF;ENSG00000100714|ENST00000652337|MTHFD1;ENSG00000120254|ENST00000367321|MTHFD1L	ENST00000556771.5_1_14:64906939-64911458:+|nuORF	ENST00000556771.5_1_14:64906939-64911458:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.783447265625	2	557.78371	1113.55287	0.33364	0.0001861	-0.98063	-0.00054698	-0.64699	-0.00036088	557.7830999151123	58.978	0.56332	58.964	58.746	59.309	-0.014267					35	19	2	0	0	0	0.026579	1	14321	14321		61.602	23.426	1	899740			14455	1624	8133	8133	18395	18395		200			0.0006326736834125768
IGMFSLGWRST	11	Unmodified	_IGMFSLGWRST_					0	0	0			REV__ENST00000467873.1_1_3:183882564-183882771:+|nuORF	REV__ENST00000467873.1_1_3:183882564-183882771:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.2035827636719	3	418.881502	1253.62268	0.53355	0.0002235	-2.9411	-0.001232	-2.4075	-0.0010085	418.88020470810716	55.887	0.39133	55.887	55.682	56.074	0					15	13	2	0	0	0	0.33094	1	13427	13427		7.4771	0.43998	1	221360	+		14456	21310	8134	8134	18396	18396					0.0060114603695637925
IGNFHQEEKSN	11	Unmodified	_IGNFHQEEKSN_					0	0	0		nc|ENSG00000159788|O14924-5|RGS12;ENST00000502947.1_1_4:3317897-3344786:+|nuORF;nc|ENSG00000159788|O14924-4|RGS12;ENSG00000159788|ENST00000336727|RGS12	nc|ENSG00000159788|O14924-5|RGS12	nc|ENSG00000159788|O14924-5|RGS12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8822021484375	3	434.873953	1301.60003	-0.23491	-0.00010216	-1.8689	-0.00081275	-2.1038	-0.0009149	434.87460504852544	23.75	0.15839	23.75	23.699	23.857	0					6	4	2	0	0	0	0.33287	1	3527	3527		2.8433	1.101	1	11605			14457	12786	8135	8135	18397	18397					-0.03870781826935854
IGNRISPI	8	Unmodified	_IGNRISPI_					0	0	0			REV__ENSG00000124486|ENST00000378308|USP9X	REV__ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7797546386719	2	435.263802	868.513051	0.058833	2.5608E-05	-0.27864	-0.00012128	-0.21981	-9.5676E-05	435.26355167983735	37.599	0.4889	37.687	37.442	37.93	0.087406					26	17	2	0	0	0	0.31934	1	7762	7762		18.135	0	1	220990	+		14458	15234	8136	8136	18398	18398					0.07353508479945958
IGNRISPI	8	Unmodified	_IGNRISPI_					0	0	0			REV__ENSG00000124486|ENST00000378308|USP9X	REV__ENSG00000124486|ENST00000378308|USP9X	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	435.263802	868.513051	-0.048919	-2.1293E-05	-0.66795	-0.00029074	-0.71687	-0.00031203	435.26349752531	37.529	0.47116	37.622	37.423	37.894	0.093014	-0.028602	-0.00013759	NaN	18.135	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172180	+		14459	15234	8136	8136							0.07353508479945958
IGPGYAIAKK	10	Unmodified	_IGPGYAIAKK_					0	0	0			REV__nc|ENSG00000128591|Q14315-2|FLNC	REV__nc|ENSG00000128591|Q14315-2|FLNC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.767333984375	2	509.30821	1016.60187	-0.092843	-4.7285E-05	-4.4434	-0.002263	-4.5362	-0.0023103	509.30599201912634	13.665	0.32936	13.566	13.389	13.718	-0.099291					16	10	2	0	0	0	0.32009	1	496	496		3.9444	0.3479	1	34012	+		14460	15377	8137	8137	18399	18399					0.09422923719603205
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8426513671875	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.9	1	113.9	113.4	114.4	0								0	0	0	0.37382	1	29571	29571		2.9952	0	1		+		14461	17301	8138	8138	18400	18400					0.10690847091268552
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.843017578125	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.31	1	114.31	113.81	114.81	0								0	0	0	0.37382	1	29659	29659		2.9952	0	1		+		14462	17301	8138	8138	18401	18401					0.10690847091268552
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8427734375	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.86	1	116.86	116.36	117.36	0								0	0	0	0.37382	1	30241	30241		2.9952	0	1		+		14463	17301	8138	8138	18402	18402					0.10690847091268552
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8443603515625	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.511	1	91.602	91.102	92.102	0.090668								0	0	0	0.37382	1	24293	24293		2.9952	0	1		+		14464	17301	8138	8138	18403	18403					0.10690847091268552
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8428344726562	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.81	1	111.8	111.3	112.3	-0.015625								0	0	0	0.37382	1	29086	29086		2.9952	0	1		+		14465	17301	8138	8138	18404	18404					0.10690847091268552
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8430786132812	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.83	1	112.81	112.31	113.31	-0.017303								0	0	0	0.37382	1	29342	29342		2.9952	0	1		+		14466	17301	8138	8138	18405	18405					0.10690847091268552
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8433227539062	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.96	1	113.94	113.44	114.44	-0.019096								0	0	0	0.37382	1	29607	29607		2.9952	0	1		+		14467	17301	8138	8138	18406	18406					0.10690847091268552
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8432006835938	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.59	1	114.57	114.07	115.07	-0.019096								0	0	0	0.37382	1	29746	29746		2.9952	0	1		+		14468	17301	8138	8138	18407	18407					0.10690847091268552
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8427124023438	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.12	1	115.1	114.6	115.6	-0.020988								0	0	0	0.37382	1	29862	29862		2.9952	0	1		+		14469	17301	8138	8138	18408	18408					0.10690847091268552
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8429565429688	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.93	1	117.91	117.41	118.41	-0.024147								0	0	0	0.37382	1	30508	30508		2.9952	0	1		+		14470	17301	8138	8138	18409	18409					0.10690847091268552
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8428955078125	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.59	1	119.57	119.07	120.07	-0.024361								0	0	0	0.37382	1	30869	30869		2.9952	0	1		+		14471	17301	8138	8138	18410	18410					0.10690847091268552
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8434448242188	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120	1	119.97	119.47	120.47	-0.030464								0	0	0	0.37382	1	30961	30961		2.9952	0	1		+		14472	17301	8138	8138	18411	18411					0.10690847091268552
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.84326171875	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.07	1	111.08	110.58	111.58	0.01152								0	0	0	0.36137	1	28947	28947		5.7319	0	1		+		14473	17301	8138	8138	18412	18412					0.10690847091268552
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.792236328125	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.97	1	111.98	111.48	112.48	0.0131								0	0	0	0.37382	1	29149	29149		2.9952	0	1		+		14474	17301	8138	8138	18413	18413					0.10690847091268552
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.84326171875	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.21	1	112.23	111.73	112.73	0.0131								0	0	0	0.37382	1	29210	29210		2.9952	0	1		+		14475	17301	8138	8138	18414	18414					0.10690847091268552
IGPIVLEKQPG	11	Unmodified	_IGPIVLEKQPG_					0	0	0			REV__nc|ENSG00000166220|Q96M53-2|TBATA	REV__nc|ENSG00000166220|Q96M53-2|TBATA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8433227539062	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.32	1	113.34	112.84	113.84	0.014824								0	0	0	0.37382	1	29487	29487		2.9952	0	1		+		14476	17301	8138	8138	18415	18415					0.10690847091268552
IGPLVKTI	8	Unmodified	_IGPLVKTI_					0	0	0		nc|ENSG00000023228|P28331-3|NDUFS1;nc|ENSG00000023228|P28331-4|NDUFS1;nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1	nc|ENSG00000023228|P28331-3|NDUFS1	nc|ENSG00000023228|P28331-3|NDUFS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.18463134765625	2	420.781296	839.54804	-0.11003	-4.6299E-05	-0.28116	-0.00011831	-0.39119	-0.00016461	420.78102879393896	46.135	0.70262	46.194	45.984	46.686	0.059834					30	25	2	0	0	0	0.32435	1	10515	10515		16.942	0	1	298510			14477	520	8139	8139	18416	18416					0.1218475128788441
IGPLVKTI	8	Unmodified	_IGPLVKTI_					0	0	0		nc|ENSG00000023228|P28331-3|NDUFS1;nc|ENSG00000023228|P28331-4|NDUFS1;nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1	nc|ENSG00000023228|P28331-3|NDUFS1	nc|ENSG00000023228|P28331-3|NDUFS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	420.781296	839.54804	0.078324	3.2957E-05	-0.51786	-0.00021791	-0.43954	-0.00018495	420.78091529155705	46.13	0.32816	46.195	46.008	46.336	0.065048	0.0004527	-0.00011811	NaN	16.942	18	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279790			14478	520	8139	8139							0.1218475128788441
IGPQQRRRLS	10	Unmodified	_IGPQQRRRLS_					0	0	0			REV__nc|ENSG00000243943|Q96ME7-2|ZNF512	REV__nc|ENSG00000243943|Q96ME7-2|ZNF512	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.2425231933594	3	404.242422	1209.70544	-0.27784	-0.00011232	0.11234	4.5413E-05	-0.1655	-6.6903E-05	404.2424028560341	18.755	0.59047	18.755	18.535	19.125	0					41	20	3	0	0	0	0.32137	1	2039	2039		1.7423	0	1	117460	+		14479	19196	8140	8140	18417	18417					0.10897223879987905
IGPQQRRRLS	10	Unmodified	_IGPQQRRRLS_					0	0	0			REV__nc|ENSG00000243943|Q96ME7-2|ZNF512	REV__nc|ENSG00000243943|Q96ME7-2|ZNF512	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	404.242422	1209.70544	-0.33042	-0.00013357	1.169	0.00047256	0.83858	0.00033899	404.2425182783188	18.989	0.61959	18.871	18.556	19.175	-0.11739	0.028566	0.00091664	NaN	1.7423	76	21	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151180	+		14480	19196	8140	8140							0.10897223879987905
IGPQQRRRLS	10	Unmodified	_IGPQQRRRLS_					0	0	0			REV__nc|ENSG00000243943|Q96ME7-2|ZNF512	REV__nc|ENSG00000243943|Q96ME7-2|ZNF512	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	404.242422	1209.70544	-0.38324	-0.00015492	0.44806	0.00018113	0.064826	2.6206E-05	404.24253136546884	18.96	0.57	18.902	18.628	19.198	-0.058174	0.059051	4.2345E-05	NaN	1.7423	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99968	+		14481	19196	8140	8140							0.10897223879987905
IGPRFKLLT	9	Unmodified	_IGPRFKLLT_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000450651.5_1_22:21841260-21846319:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.283447265625	2	522.831852	1043.64915	0.78963	0.00041284	-1.0201	-0.00053334	-0.23047	-0.0001205	522.8312702612401	54.548	0.5692	54.548	54.268	54.837	0					33	20	2	0	0	0	0.24311	1	13001	13001		7.2892	2.5332	1	363630			14482	8538	8141	8141	18418	18418					0.12907202990618316
IGPRFKLLT	9	Unmodified	_IGPRFKLLT_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000450651.5_1_22:21841260-21846319:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2832641601562	2	522.831852	1043.64915	0.70236	0.00036721	-0.58898	-0.00030794	0.11338	5.9277E-05	522.8314112119771	54.479	0.50698	54.543	54.327	54.834	0.063206					39	18	3	0	0	0	0.24311	1	12963	12963		16.942	8.349	1	360470			14483	8538	8141	8141	18419	18419					0.12907202990618316
IGPRFKLLT	9	Unmodified	_IGPRFKLLT_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000450651.5_1_22:21841260-21846319:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3162841796875	2	522.831852	1043.64915	0.77769	0.0004066	-0.99407	-0.00051973	-0.21638	-0.00011313	522.8311715343526	54.753	0.51567	54.737	54.49	55.006	-0.015919					39	18	3	0	0	0	0.24311	1	13035	13035		16.942	8.349	1	362440			14484	8538	8141	8141	18420	18420					0.12907202990618316
IGQALKLK	8	Unmodified	_IGQALKLK_					0	0	0		nc|ENSG00000136895|Q5VVW2-5|GARNL3;ENSG00000136895|ENST00000373387|GARNL3;nc|ENSG00000136895|Q5VVW2-2|GARNL3	nc|ENSG00000136895|Q5VVW2-5|GARNL3	nc|ENSG00000136895|Q5VVW2-5|GARNL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.9347229003906	2	435.792195	869.569838	-0.24602	-0.00010722	-0.23364	-0.00010182	-0.47967	-0.00020904	435.7918951401093	27.45	0.29418	27.429	27.321	27.615	-0.021412					17	9	2	0	0	0	0.34131	1	4684	4684		12.532	0	1	39063			14485	4011	8142	8142	18421	18421					0.12983556036465416
IGQFTHIL	8	Unmodified	_IGQFTHIL_					0	0	0			REV__nc|ENSG00000205494|A6NMU1|OR52A4P	REV__nc|ENSG00000205494|A6NMU1|OR52A4P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7860107421875	2	464.766178	927.517802	-0.56295	-0.00026164	-2.4573	-0.0011421	-3.0203	-0.0014037	464.76390737377784	34.37	0.70115	34.37	34.074	34.775	0					47	24	3	0	0	0	0.31088	1	6794	6794		21.747	3.6117	1	261250	+		14486	23172	8143	8143	18422	18422					0.051143926227155134
IGQLRWTESF	10	Unmodified	_IGQLRWTESF_					0	0	0			REV__ENST00000427491.1_1_21:37514170-37514242:-|nuORF	REV__ENST00000427491.1_1_21:37514170-37514242:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.7351379394531	3	412.8839	1235.62987	-0.35768	-0.00014768	4.1739	0.0017233	3.8162	0.0015757	412.8862455543679	42.455	0.26187	42.455	42.306	42.567	0					14	9	2	0	0	0	0.3179	1	9236	9236		5.7834	0	1	105060	+		14487	20912	8144	8144	18423	18423					0.02148201909017189
IGRERLDGG	9	Unmodified	_IGRERLDGG_					0	0	0		ENST00000568593.1_1_3:47421869-47422184:-|nuORF	ENST00000568593.1_1_3:47421869-47422184:-|nuORF	ENST00000568593.1_1_3:47421869-47422184:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7646789550781	2	486.764697	971.514842	-0.062226	-3.0289E-05	-0.14075	-6.8511E-05	-0.20297	-9.8801E-05	486.76476625052055	13.86	0.79807	13.86	13.567	14.365	0					56	27	3	0	0	0	0.29638	1	602	602		9.3831	0.035688	1	454830			14488	12002	8145	8145	18424	18424					0.0279451749790951
IGRHKNII	8	Unmodified	_IGRHKNII_					0	0	0		ENSG00000160867|ENST00000292408|FGFR4;nc|ENSG00000160867|P22455-2|FGFR4	ENSG00000160867|ENST00000292408|FGFR4	ENSG00000160867|ENST00000292408|FGFR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7983703613281	2	475.798343	949.582134	0.26005	0.00012373	-1.219	-0.00057999	-0.95893	-0.00045626	475.7980710464559	26.23	0.61489	26.208	25.97	26.584	-0.022236					78	21	5	0	0	0	0.45015	1	4349	4349		5.7604	0.52976	1	394910			14489	5494	8146	8146	18425	18425					0.10532592499521343
IGRLHLVK	8	Unmodified	_IGRLHLVK_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.2371520996094	2	468.311087	934.60762	0.072078	3.3755E-05	0.2801	0.00013118	0.35218	0.00016493	468.3110190201778	33.841	0.6407	33.908	33.711	34.352	0.066704					30	22	3	0	0	0	0.34218	1	6586	6586		5.2307	0.90143	1	112250	+		14490	15198	8147	8147	18426	18426					0.13770067021948762
IGRLPAAF	8	Unmodified	_IGRLPAAF_					0	0	0			REV__nc|ENSG00000133466|Q9BXI9-3|C1QTNF6	REV__nc|ENSG00000133466|Q9BXI9-3|C1QTNF6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.76806640625	2	422.755613	843.496673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.491	1	62.483	61.983	62.983	-0.0085526								0	0	0	0.34461	1	15410	15410		17.087	0	1		+		14491	15624	8148	8148	18427	18427					0.06866427313843815
IGRRQLWK	8	Unmodified	_IGRRQLWK_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2989501953125	2	528.824892	1055.63523	0.37114	0.00019627	-2.7923	-0.0014766	-2.4212	-0.0012804	528.8241992038169	23.799	0.55078	23.799	23.643	24.194	0					28	18	2	0	0	0	0.34272	1	3593	3593		7.9102	0	1	61095			14492	595	8149	8149	18428	18428					0.10963970282159607
IGRSAKTVREF	11	Unmodified	_IGRSAKTVREF_					0	0	0		nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8	nc|ENSG00000154611|Q8TAA3-2|PSMA8	nc|ENSG00000154611|Q8TAA3-2|PSMA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.361572265625	2	632.362036	1262.70952	0.36471	0.00023063	-0.77582	-0.0004906	-0.41111	-0.00025997	632.3614122477703	90.943	0.60844	91.033	90.827	91.435	0.090668					116	43	4	0	0	0	0.46971	1	24177	24177		4.5289	2.8762	1	4420300			14493	5139	8150	8150	18429	18429					0.08867268583026089
IGRSTEKASP	10	Unmodified	_IGRSTEKASP_					0	0	0			REV__nc|ENSG00000117616|Q9BUV0-3|RSRP1	REV__nc|ENSG00000117616|Q9BUV0-3|RSRP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.804931640625	2	523.285463	1044.55637	0.16846	8.8154E-05	-0.43345	-0.00022682	-0.26498	-0.00013866	523.2853312579557	14.368	0.25569	14.368	14.249	14.505	0					14	8	2	0	0	0	0.3144	1	736	736		13.042	2.2185	1	35670	+		14494	14981	8151	8151	18430	18430					0.03587653466570373
IGSAMGYLS	9	Unmodified	_IGSAMGYLS_					0	0	0			REV__ENSG00000161021|ENST00000292599|MAML1	REV__ENSG00000161021|ENST00000292599|MAML1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2997741699219	2	449.720578	897.426604	0.467	0.00021002	-0.91179	-0.00041005	-0.44479	-0.00020003	449.7203897633951	45.395	0.25224	45.455	45.253	45.505	0.059834					9	8	2	0	0	0	0.23783	1	10096	10096		18.135	6.4947	1	76033	+		14495	16932	8152	8152	18431	18431					-0.02621239136931308
IGSEQLYSL	9	Unmodified	_IGSEQLYSL_					0	0	0			REV__ENST00000295736.9_1_3:27460002-27460044:-|nuORF	REV__ENST00000295736.9_1_3:27460002-27460044:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.80902099609375	2	505.263665	1008.51278	0.23235	0.0001174	-2.0678	-0.0010448	-1.8355	-0.00092739	505.2625769616117	31.056	0.39857	31.083	30.893	31.292	0.027157					21	14	2	0	0	0	0.24848	1	5770	5770		13.906	0.86358	1	93913	+		14496	19779	8153	8153	18432	18432					0.008860439694331035
IGSGAIQTTV	10	Unmodified	_IGSGAIQTTV_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.74981689453125	2	473.763832	945.513111	-0.08423	-3.9905E-05	0.12421	5.8847E-05	0.039981	1.8942E-05	473.76395631341165	23.326	0.77901	23.326	23.021	23.8	0					60	26	3	0	0	0	0.29978	1	3421	3421		20.454	1.1966	1	397520			14497	1848	8154	8154	18433	18433					0.03817463689267697
IGSGSAYISGP	11	Unmodified	_IGSGSAYISGP_					0	0	0		TRMT2B|p.L360Sfs*12|1|0.63|ENSG00000188917|chrX:101020573-101020577|GAGAG/-|frameshift_variant	TRMT2B|p.L360Sfs*12|1|0.63|ENSG00000188917|chrX:101020573-101020577|GAGAG/-|frameshift_variant	TRMT2B|p.L360Sfs*12|1|0.63|ENSG00000188917|chrX:101020573-101020577|GAGAG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7537841796875	2	504.753464	1007.49238	0.40574	0.0002048	0.76342	0.00038534	1.1692	0.00059014	504.7539292539555	20.066	0.59758	19.95	19.612	20.209	-0.11592					45	20	3	0	0	0	0.32017	1	2452	2452		20.415	2.0414	1	118840			14498	23402	8155	8155	18434	18434					-0.011071266903854848
IGSKPLQI	8	Unmodified	_IGSKPLQI_					0	0	0		ENST00000567660.1_1_16:58150774-58163019:-|nuORF;ENST00000567092.1_1_16:58149929-58163019:-|nuORF;ENST00000562622.5_1_16:58149118-58163019:-|nuORF;ENSG00000070761|ENST00000262498|CFAP20	ENST00000567660.1_1_16:58150774-58163019:-|nuORF	ENST00000567660.1_1_16:58150774-58163019:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2684020996094	2	428.268553	854.522553	-0.011446	-4.902E-06	0.060598	2.5952E-05	0.049152	2.105E-05	428.26853558433174	38.179	1.3057	38.27	37.609	38.915	0.090885					73	47	3	0	0	0	0.077335	1	7999	7999		65.235	0	1	601130			14499	940	8156	8156	18435	18435					0.08947276765479728
IGSKPLQI	8	Unmodified	_IGSKPLQI_					0	0	0		ENST00000567660.1_1_16:58150774-58163019:-|nuORF;ENST00000567092.1_1_16:58149929-58163019:-|nuORF;ENST00000562622.5_1_16:58149118-58163019:-|nuORF;ENSG00000070761|ENST00000262498|CFAP20	ENST00000567660.1_1_16:58150774-58163019:-|nuORF	ENST00000567660.1_1_16:58150774-58163019:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2685546875	2	428.268553	854.522553	-0.061815	-2.6473E-05	-0.11238	-4.8131E-05	-0.1742	-7.4604E-05	428.2685334515666	38.181	1.1537	38.279	37.74	38.893	0.097527					74	41	3	0	0	0	0.12475	1	7960	7960		56.177	0	1	497880			14500	940	8156	8156	18436	18436					0.08947276765479728
IGSKPLQI	8	Unmodified	_IGSKPLQI_					0	0	0		ENST00000567660.1_1_16:58150774-58163019:-|nuORF;ENST00000567092.1_1_16:58149929-58163019:-|nuORF;ENST00000562622.5_1_16:58149118-58163019:-|nuORF;ENSG00000070761|ENST00000262498|CFAP20	ENST00000567660.1_1_16:58150774-58163019:-|nuORF	ENST00000567660.1_1_16:58150774-58163019:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	428.268553	854.522553	-0.19934	-8.5373E-05	-0.26882	-0.00011513	-0.46817	-0.0002005	428.2686041766215	38.374	1.0027	38.374	37.956	38.958	0	0.066779	-0.00019633	NaN	65.235	67	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420400			14501	940	8156	8156							0.08947276765479728
IGSLRPFVQK	10	Unmodified	_IGSLRPFVQK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.8453979492188	2	572.84549	1143.67643	0.57025	0.00032666	-0.40366	-0.00023123	0.16659	9.5429E-05	572.8451458932607	36.94	0.50898	37.033	36.661	37.17	0.093018					30	18	2	0	0	0	0.34483	1	7559	7559		13.615	4.2317	1	216470			14502	2429	8157	8157	18437	18437					0.11033686530981868
IGSLRPFVQK	10	Unmodified	_IGSLRPFVQK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	572.84549	1143.67643	0.45179	0.00025881	-0.24423	-0.00013991	0.20756	0.0001189	572.8453494086185	36.838	0.45907	36.925	36.734	37.193	0.087406	-0.083843	-1.4076E-05	NaN	13.615	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148470			14503	2429	8157	8157							0.11033686530981868
IGSVRGYVP	9	Unmodified	_IGSVRGYVP_					0	0	0			REV__ENST00000476448.1_1_6:52141011-52144220:-|nuORF	REV__ENST00000476448.1_1_6:52141011-52144220:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.779296875	2	474.269084	946.523616	0.20437	9.6928E-05	0.25773	0.00012223	0.4621	0.00021916	474.2693540432724	49.254	0.57765	49.299	48.989	49.566	0.044888					33	20	2	0	0	0	0.24311	1	11265	11265		16.942	0	1	355110	+		14504	21426	8158	8158	18438	18438					0.048214911343848144
IGSVRGYVP	9	Unmodified	_IGSVRGYVP_					0	0	0			REV__ENST00000476448.1_1_6:52141011-52144220:-|nuORF	REV__ENST00000476448.1_1_6:52141011-52144220:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	474.269084	946.523616	0.084035	3.9855E-05	0.53938	0.00025581	0.62341	0.00029567	474.2695554331475	49.214	0.45434	49.246	49.014	49.468	0.032043	0.010289	0.00024823	NaN	16.942	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291950	+		14505	21426	8158	8158							0.048214911343848144
IGTFLYMD	8	Unmodified	_IGTFLYMD_					0	0	0		ENSG00000017483|ENST00000620913|SLC38A5;nc|ENSG00000017483|Q8WUX1-2|SLC38A5;ENST00000497336.1_1_X:48316945-48325440:-|nuORF	ENSG00000017483|ENST00000620913|SLC38A5	ENSG00000017483|ENST00000620913|SLC38A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.75335693359375	2	480.230779	958.447005	0.3033	0.00014565	0.14176	6.808E-05	0.44506	0.00021373	480.23078794207026	58.609	0.62943	58.7	58.418	59.047	0.091301					36	21	2	0	0	0	0.34046	1	14299	14299		9.3474	9.3474	1	157670			14506	489	8159	8159	18439	18439					-0.033880684771247616
IGVAHQAVSCV	11	Unmodified	_IGVAHQAVSCV_					0	0	0			REV__ENST00000471393.1_1_8:54445924-54446098:+|nuORF	REV__ENST00000471393.1_1_8:54445924-54446098:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7860107421875	2	542.284408	1082.55426	0.3906	0.00021182	-0.45842	-0.00024859	-0.067815	-3.6775E-05	542.2842898229012	22.509	0.96337	22.422	22.03	22.993	-0.08761					80	34	3	0	0	0	0.43831	1	3177	3177		6.2058	1.4498	1	131230	+		14507	21357	8160	8160	18440	18440					0.016289014570929794
IGVAHQAVSCV	11	Unmodified	_IGVAHQAVSCV_					0	0	0			REV__ENST00000471393.1_1_8:54445924-54446098:+|nuORF	REV__ENST00000471393.1_1_8:54445924-54446098:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7860107421875	2	542.284408	1082.55426	0.3906	0.00021182	-0.45842	-0.00024859	-0.067815	-3.6775E-05	542.2842898229012	22.509	0.96337	22.422	22.03	22.993	-0.08761					80	34	3	0	0	0	0.33085	1	3177	3177		6.2058	1.4498	1	131230	+		14508	21357	8160	8160	18441	18441					0.016289014570929794
IGVLEVPGWM	10	Unmodified	_IGVLEVPGWM_					0	0	0			REV__ACVR1B|p.K337Vfs*24|1|0.28|ENSG00000135503|chr12:51985220-51985221|AA/-|frameshift_variant	REV__ACVR1B|p.K337Vfs*24|1|0.28|ENSG00000135503|chr12:51985220-51985221|AA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.7942504882812	2	550.794078	1099.5736	0.64632	0.00035599	-0.12307	-6.7789E-05	0.52325	0.0002882	550.7939466925086	58.169	0.64499	58.152	57.848	58.493	-0.017197					46	23	4	0	0	0	0.2892	1	14094	14094		21.747	0	1	1148800	+		14509	13077	8161	8161	18442	18442					0.027798577480098174
IGVLEVPGWM	10	Unmodified	_IGVLEVPGWM_					0	0	0			REV__ACVR1B|p.K337Vfs*24|1|0.28|ENSG00000135503|chr12:51985220-51985221|AA/-|frameshift_variant	REV__ACVR1B|p.K337Vfs*24|1|0.28|ENSG00000135503|chr12:51985220-51985221|AA/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	550.794078	1099.5736	0.47108	0.00025947	0.5486	0.00030217	1.0197	0.00056163	550.7941498303232	57.907	0.53794	57.992	57.714	58.252	0.085621	-0.079639	0.00045664	NaN	21.747	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	883270	+		14510	13077	8161	8161							0.027798577480098174
IGVQVSVKK	9	Unmodified	_IGVQVSVKK_					0	0	0			REV__ENST00000423380.1_1_9:93868803-93868941:-|nuORF	REV__ENST00000423380.1_1_9:93868803-93868941:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2649230957031	2	479.30821	956.601866	-0.078619	-3.7683E-05	0.33523	0.00016068	0.25661	0.000123	479.30826211532167	14.289	0.279	14.223	14.07	14.349	-0.066067					19	9	3	0	0	0	0.26068	1	669	669		3.2813	0	1	56975	+		14511	20879	8162	8162	18443	18443					0.12182923719615246
IGVRFNKN	8	Unmodified	_IGVRFNKN_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENST00000489736.5_1_3:148904295-148925363:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7823791503906	2	474.274701	946.534849	0.2643	0.00012535	-2.9632	-0.0014054	-2.6989	-0.00128	474.2741722028651	29.344	0.45486	29.356	29.134	29.589	0.012266					30	15	3	0	0	0	0.33245	1	5231	5231		19.439	1.304	1	154190			14512	632	8163	8163	18444	18444					0.05944313228519604
IGVTKMNINSR	11	Unmodified	_IGVTKMNINSR_					0	0	0		ENST00000531564.1_1_8:11281884-11301161:-|nuORF;ENSG00000154319|ENST00000284486|FAM167A	ENST00000531564.1_1_8:11281884-11301161:-|nuORF	ENST00000531564.1_1_8:11281884-11301161:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2214660644531	3	411.564173	1231.67069	-0.805	-0.00033131	-1.3499	-0.00055557	-2.1549	-0.00088688	411.56391894501286	34.879	0.80243	34.956	34.587	35.39	0.077377					94	28	5	0	0	0	0.32855	1	7020	7020		8.7518	2.1214	1	642160			14513	5123	8164	8164	18445	18445					0.06412219956973786
IGVWKSREV	9	Unmodified	_IGVWKSREV_					0	0	0		NPPB|p.T74I|1|0.21|ENSG00000120937|chr1:11858381-11858381|G/A|missense_variant	NPPB|p.T74I|1|0.21|ENSG00000120937|chr1:11858381-11858381|G/A|missense_variant	NPPB|p.T74I|1|0.21|ENSG00000120937|chr1:11858381-11858381|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.8599853515625	2	537.308741	1072.60293	0.77983	0.00041901	1.239	0.00066571	2.0188	0.0010847	537.3093911059188	54.649	0.39344	54.633	54.451	54.845	-0.015923					22	13	2	0	0	0	0.24688	1	12971	12971		14.838	10.509	1	292620			14514	13034	8165	8165	18446	18446					0.06953138088510968
IGWAWFLM	8	Unmodified	_IGWAWFLM_					0	0	0		ENST00000320805.8_2_16:28977785-28977899:+|nuORF	ENST00000320805.8_2_16:28977785-28977899:+|nuORF	ENST00000320805.8_2_16:28977785-28977899:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2791748046875	2	512.259674	1022.50479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.279	1	63.375	62.875	63.875	0.095722								0	0	0	0.32888	1	15656	15656		24.21	4.771	1				14515	9377	8166	8166	18447	18447					-0.005557617610520538
IGYNKAFTPE	10	Unmodified	_IGYNKAFTPE_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1;PKHD1|p.A1797Gfs*9|1|0.23|ENSG00000170927|chr6:52017624-52017625|-/G|frameshift_variant	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8219604492188	2	570.290214	1138.56587	0.50704	0.00028916	0.32754	0.00018679	0.83457	0.00047595	570.2902207305227	44.28	0.2648	44.349	44.199	44.463	0.068569					13	9	2	0	0	0	0.30093	1	9774	9774		16.149	0	1	213850			14516	6498	8167	8167	18448	18448					0.0021342175207337277
IHAECPMH	8	Unmodified	_IHAECPMH_					0	0	0		ENSG00000011677|ENST00000370314|GABRA3	ENSG00000011677|ENST00000370314|GABRA3	ENSG00000011677|ENST00000370314|GABRA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.83380126953125	2	469.204573	936.394592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.482	1	74.534	74.034	75.034	0.052361								0	0	0	0.36961	1	19081	19081		5.7604	0	1				14517	449	8168	8168	18449	18449					-0.07614930091722272
IHAHIFIIL	9	Unmodified	_IHAHIFIIL_					0	0	0		ENST00000429962.1_1_22:21356738-21357321:+|nuORF	ENST00000429962.1_1_22:21356738-21357321:+|nuORF	ENST00000429962.1_1_22:21356738-21357321:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2817993164062	2	538.834394	1075.65424	0.075781	4.0834E-05	-1.235	-0.00066547	-1.1592	-0.00062463	538.833577738553	12.394	0.47268	12.326	12.167	12.64	-0.06806					27	15	3	0	0	0	0.26251	1	150	150		0.6015	0.076735	1	81287			14518	10458	8169	8169	18450	18450					0.11943506853231156
IHAQLKSIL	9	Unmodified	_IHAQLKSIL_					0	0	0		ENST00000543147.1_1_12:9908815-9913428:-|nuORF	ENST00000543147.1_1_12:9908815-9913428:-|nuORF	ENST00000543147.1_1_12:9908815-9913428:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.7745666503906	2	511.821484	1021.62842	0.52163	0.00026698	-0.46068	-0.00023579	0.060945	3.1193E-05	511.8210088077241	58.663	0.58131	58.649	58.278	58.86	-0.014267					41	20	3	0	0	0	0.22674	1	14261	14261		22.736	1.1993	1	226810			14519	11740	8170	8170	18451	18451					0.11846612610952434
IHDELSSELVQ	11	Unmodified	_IHDELSSELVQ_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.9212646484375	3	423.882225	1268.62485	-0.26717	-0.00011325	-1.7648	-0.00074806	-2.032	-0.00086131	423.8819428729604	18.767	0.95806	18.65	18.325	19.283	-0.11739					89	33	4	0	0	0	0.33189	1	2112	2112		3.5927	1.3099	1	170650	+		14520	14742	8171	8171	18452	18452					0.0012785325575350726
IHESARRHIEA	11	Unmodified	_IHESARRHIEA_					0	0	0			REV__ENSG00000188408|ENST00000602297|MAGEB5	REV__ENSG00000188408|ENST00000602297|MAGEB5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.7512512207031	3	440.237337	1317.69018	-0.19506	-8.5874E-05	-0.43855	-0.00019307	-0.63361	-0.00027894	440.5714777418837	14.575	0.40315	14.471	14.308	14.711	-0.10466					19	13	2	0	0	0	0.33316	1	775	775		2.084	0	1	46219	+		14521	18553	8172	8172	18453	18453					0.04404312292126633
IHFHVWPP	8	Unmodified	_IHFHVWPP_					0	0	0			REV__ENST00000570116.6_1_16:89971082-89977643:+|nuORF	REV__ENST00000570116.6_1_16:89971082-89977643:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7755126953125	2	516.774337	1031.53412	0.084314	4.3571E-05	2.6554	0.0013722	2.7397	0.0014158	516.7752075651933	17.246	0.329	17.129	17.026	17.355	-0.11739					14	11	2	0	0	0	0.45851	1	1599	1599		2.8892	0.15402	1	22878	+		14522	22410	8173	8173	18454	18454					0.01961518579469157
IHFHVWPP	8	Unmodified	_IHFHVWPP_					0	0	0			REV__ENST00000570116.6_1_16:89971082-89977643:+|nuORF	REV__ENST00000570116.6_1_16:89971082-89977643:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	516.774337	1031.53412	0.084314	4.3571E-05	2.6554	0.0013722	2.7397	0.0014158	516.7752075651933	17.246	0.329	17.129	17.026	17.355	-0.11739	0	0	NaN	2.8892	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22878	+		14523	22410	8173	8173							0.01961518579469157
IHFIMHHLL	9	Unmodified	_IHFIMHHLL_					0	0	0		ENST00000377191.4_1_20:21328787-21328991:+|nuORF	ENST00000377191.4_1_20:21328787-21328991:+|nuORF	ENST00000377191.4_1_20:21328787-21328991:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8230590820312	2	580.823504	1159.63245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.431	1	28.431	27.931	28.931	0								0	0	0	0.26258	1	4958	4958		2.3027	0.24298	1				14524	9931	8174	8174	18455	18455					0.05902378833025068
IHHERHRLE	9	Unmodified	_IHHERHRLE_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	REV__nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.555419921875	3	409.554889	1225.64284	-0.077158	-3.16E-05	1.5892	0.00065088	1.5121	0.00061928	409.5555736487821	17.886	0.72274	17.825	17.53	18.253	-0.060429					56	25	3	0	0	0	0.25949	1	1749	1749		4.897	1.31	1	128850	+		14525	14742	8175	8175	18456	18456					0.03904077811807838
IHHIRAKNT	9	Unmodified	_IHHIRAKNT_					0	0	0		ENST00000440535.5_1_3:197342537-197350198:-|nuORF;ENST00000414207.5_1_3:197342537-197350198:-|nuORF	ENST00000440535.5_1_3:197342537-197350198:-|nuORF	ENST00000440535.5_1_3:197342537-197350198:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3175048828125	2	545.317432	1088.62031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.14	1	117.12	116.62	117.62	-0.024147								0	0	0	0.26704	1	30331	30331		0.6015	0	1				14526	10299	8176	8176	18457	18457					0.07954478414171717
IHHLARHA	8	Unmodified	_IHHLARHA_					0	0	0		ENSG00000008405|ENST00000008527|CRY1;nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2	ENSG00000008405|ENST00000008527|CRY1	ENSG00000008405|ENST00000008527|CRY1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7297668457031	2	477.77266	953.530767	-0.094873	-4.5328E-05	-0.048419	-2.3133E-05	-0.14329	-6.8461E-05	477.77279313084176	15.463	0.38361	15.463	15.207	15.591	0					17	12	2	0	0	0	0.34437	1	1061	1061		0.69038	0	1	40012			14527	397	8177	8177	18458	18458					0.052142685254466414
IHHLARHA	8	Unmodified	_IHHLARHA_					0	0	0		ENSG00000008405|ENST00000008527|CRY1;nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2	ENSG00000008405|ENST00000008527|CRY1	ENSG00000008405|ENST00000008527|CRY1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	477.77266	953.530767	0.03888	1.8576E-05	-0.85292	-0.0004075	-0.81404	-0.00038892	477.7722005985445	15.579	0.38453	15.469	15.312	15.696	-0.10981	0.0044727	-0.00033244	NaN	0.69038	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35713			14528	397	8177	8177							0.052142685254466414
IHHLARHA	8	Unmodified	_IHHLARHA_					0	0	0		ENSG00000008405|ENST00000008527|CRY1;nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2	ENSG00000008405|ENST00000008527|CRY1	ENSG00000008405|ENST00000008527|CRY1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	477.77266	953.530767	-0.0027376	-1.3079E-06	-0.23245	-0.00011106	-0.23519	-0.00011237	477.7727000012368	15.526	0.33482	15.461	15.333	15.668	-0.064413	-0.0030565	0.00026044	NaN	0.69038	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32058			14529	397	8177	8177							0.052142685254466414
IHIVHEKKN	9	Unmodified	_IHIVHEKKN_					0	0	0			REV__nc|ENSG00000169118|Q9HCP0-2|CSNK1G1	REV__nc|ENSG00000169118|Q9HCP0-2|CSNK1G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.3271484375	2	559.327465	1116.64038	0.35907	0.00020084	-0.56535	-0.00031622	-0.20628	-0.00011538	559.3271371371479	21.367	0.74222	21.367	21.052	21.795	0					60	25	3	0	0	0	0.28674	1	2793	2793		10.824	0.75	1	348270	+		14530	17498	8178	8178	18459	18459					0.08672229354147021
IHKALQGI	8	Unmodified	_IHKALQGI_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.234619140625	2	440.27417	878.533787	-0.69536	-0.00030615	0.32595	0.00014351	-0.36941	-0.00016264	440.27418685029323	35.222	0.57685	35.222	34.943	35.52	0					34	20	2	0	0	0	0.34046	1	6972	6972		9.3474	3.587	1	633360			14531	1368	8179	8179	18460	18460					0.08966098859605154
IHKALQGI	8	Unmodified	_IHKALQGI_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2345275878906	2	440.27417	878.533787	-0.83142	-0.00036605	0.33672	0.00014825	-0.4947	-0.0002178	440.27422025264406	35.077	0.54823	35.152	34.933	35.481	0.075306					45	19	3	0	0	0	0.34046	1	6934	6934		14.582	5.9884	1	754250			14532	1368	8179	8179	18461	18461					0.08966098859605154
IHLCLALRIPF	11	Unmodified	_IHLCLALRIPF_					0	0	0		ENSG00000279395|ENST00000625203|OR5L1	ENSG00000279395|ENST00000625203|OR5L1	ENSG00000279395|ENST00000625203|OR5L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.8769226074219	3	432.593404	1294.75838	-0.22863	-9.8906E-05	3.7949	0.0016416	3.5662	0.0015427	432.92959303283607	33.617	0.13669	33.684	33.633	33.77	0.0667					6	4	2	0	0	0	0.33277	1	6534	6534		3.0723	1.8574	1	92520			14533	8751	8180	8180	18462	18462					0.12279465618416907
IHLILCFKF	9	Unmodified	_IHLILCFKF_					0	0	0			REV__ENST00000238831.8_1_2:32530875-32530977:+|nuORF	REV__ENST00000238831.8_1_2:32530875-32530977:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3297729492188	2	567.33063	1132.64671	0.26897	0.0001526	-0.60987	-0.000346	-0.3409	-0.0001934	567.3300574984545	80.382	2.87	80.447	78.587	81.457	0.065102					380	122	5	0	0	0	0.30623	1	20508	20508		7.9102	7.9102	1	6235000	+		14534	19487	8181	8181	18463	18463					0.08569031261299642
IHLILCFKF	9	Unmodified	_IHLILCFKF_					0	0	0			REV__ENST00000238831.8_1_2:32530875-32530977:+|nuORF	REV__ENST00000238831.8_1_2:32530875-32530977:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3297119140625	2	567.33063	1132.64671	0.28491	0.00016164	-0.96386	-0.00054683	-0.67894	-0.00038519	567.3299030070093	80.442	2.8672	80.416	78.604	81.472	-0.026825					370	113	5	0	0	0	0.30623	1	20528	20528		7.9102	7.9102	1	5958500	+		14535	19487	8181	8181	18464	18464					0.08569031261299642
IHLYLLNQ	8	Unmodified	_IHLYLLNQ_					0	0	0			REV__ENST00000338372.6_1_19:54567073-54567187:-|nuORF	REV__ENST00000338372.6_1_19:54567073-54567187:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.28375244140625	2	507.292559	1012.57057	0.34209	0.00017354	0.15185	7.7035E-05	0.49395	0.00025058	507.2924301464364	38.341	0.81503	38.432	38.127	38.942	0.090881					78	29	3	0	0	0	0.42446	1	7957	7957		14.582	3.7578	1	648890	+		14536	20093	8182	8182	18465	18465					0.06478350685529222
IHMGLHLL	8	Unmodified	_IHMGLHLL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.27716064453125	2	467.270573	932.526593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.976	1	96.054	95.554	96.554	0.077408								0	0	0	0.35779	1	25647	25647		11.114	0.93107	1				14537	2153	8183	8183	18466	18466					0.05763042987553035
IHMLTHLAEAL	11	Unmodified	_IHMLTHLAEAL_					0	0	0		ENST00000524832.5_1_11:882499-902261:-|nuORF;ENST00000526714.5_1_11:870485-904855:-|nuORF;ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1	ENST00000524832.5_1_11:882499-902261:-|nuORF	ENST00000524832.5_1_11:882499-902261:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.90338134765625	3	416.897152	1247.66963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.832	1	19.716	19.216	20.216	-0.11592								0	0	0	0.35543	1	2356	2356		7.0371	0.41363	1				14538	7017	8184	8184	18467	18467					0.05570005588128879
IHPKAGLQ	8	Unmodified	_IHPKAGLQ_					0	0	0		ENST00000559598.6_1_16:54954310-54959048:-|nuORF;ENST00000558952.1_1_16:54957460-54959048:-|nuORF;ENST00000560912.5_1_16:54954310-54959048:-|nuORF;ENST00000501177.7_1_16:54953001-54959048:-|nuORF	ENST00000559598.6_1_16:54954310-54959048:-|nuORF	ENST00000559598.6_1_16:54954310-54959048:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.2591857910156	2	432.25852	862.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.21	1	99.21	98.71	99.71	0								0	0	0	0.37724	1	26547	26547		2.3027	0	1				14539	11268	8185	8185	18468	18468					0.06573525825524484
IHPKAGLQ	8	Unmodified	_IHPKAGLQ_					0	0	0		ENST00000559598.6_1_16:54954310-54959048:-|nuORF;ENST00000558952.1_1_16:54957460-54959048:-|nuORF;ENST00000560912.5_1_16:54954310-54959048:-|nuORF;ENST00000501177.7_1_16:54953001-54959048:-|nuORF	ENST00000559598.6_1_16:54954310-54959048:-|nuORF	ENST00000559598.6_1_16:54954310-54959048:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.2591857910156	2	432.25852	862.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.033	1	99.084	98.584	99.584	0.050888								0	0	0	0.37724	1	26506	26506		2.3027	0	1				14540	11268	8185	8185	18469	18469					0.06573525825524484
IHPPKLVL	8	Unmodified	_IHPPKLVL_					0	0	0		ENSG00000163848|ENST00000360647|ZNF148;ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ZNF148|p.Q640Sfs*7|1|0.36|ENSG00000163848|chr3:125232809-125232809|A/-|frameshift_variant	ENSG00000163848|ENST00000360647|ZNF148	ENSG00000163848|ENST00000360647|ZNF148	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.9346008300781	2	458.802563	915.590573	0.32173	0.00014761	0.011436	5.2468E-06	0.33317	0.00015286	458.8024780266135	45.466	0.89766	45.525	45.053	45.951	0.059834					51	31	2	0	0	0	0.34185	1	10128	10128		10.183	3.8293	1	335140			14541	5744	8186	8186	18470	18470					0.12940146416133302
IHPPKLVL	8	Unmodified	_IHPPKLVL_					0	0	0		ENSG00000163848|ENST00000360647|ZNF148;ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ZNF148|p.Q640Sfs*7|1|0.36|ENSG00000163848|chr3:125232809-125232809|A/-|frameshift_variant	ENSG00000163848|ENST00000360647|ZNF148	ENSG00000163848|ENST00000360647|ZNF148	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2691345214844	2	458.802563	915.590573	0.30504	0.00013995	0.17539	8.0471E-05	0.48044	0.00022042	458.8024869272219	45.584	0.99931	45.649	44.952	45.951	0.065048					57	36	2	0	0	0	0.34046	1	10126	10126		14.582	4.3983	1	278350			14542	5744	8186	8186	18471	18471					0.12940146416133302
IHQLILLLSY	10	Unmodified	_IHQLILLLSY_					0	0	0			REV__ENSG00000182938|ENST00000328801|OTOP3	REV__ENSG00000182938|ENST00000328801|OTOP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.7702026367188	2	606.871174	1211.72779	0.26949	0.00016355	-0.11968	-7.2628E-05	0.14982	9.0919E-05	606.8709478750562	65.209	0.44883	65.209	65.128	65.577	0					23	15	2	0	0	0	0.32051	1	16341	16341		7.2892	1.9923	1	126150	+		14543	18227	8187	8187	18472	18472					0.1304001050507395
IHQQLRKKETQ	11	Unmodified	_IHQQLRKKETQ_					0	0	0			REV__nc|ENSG00000105357|Q7Z406-5|MYH14	REV__nc|ENSG00000105357|Q7Z406-5|MYH14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7925720214844	3	470.272158	1407.79465	0.030507	1.4347E-05	-0.054722	-2.5734E-05	-0.024215	-1.1388E-05	470.27205491616354	24.914	0.77933	24.914	24.548	25.328	0					54	26	3	0	0	0	0.33326	1	3787	3787		1.4551	0.67859	1	177700	+		14544	14451	8188	8188	18473	18473					0.10706014048810175
IHRKITSLK	9	Unmodified	_IHRKITSLK_					0	0	0			REV__ENSG00000188070|ENST00000433688|ZFTA	REV__ENSG00000188070|ENST00000433688|ZFTA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2826538085938	2	548.353483	1094.69241	0.40747	0.00022344	-0.050238	-2.7548E-05	0.35723	0.00019589	548.3534253029395	43.184	0.54364	43.184	42.871	43.414	0					31	19	2	0	0	0	0.25526	1	9427	9427		7.9102	0	1	467230			14545	18540	8189	8189	18474	18474					0.14885392767882877
IHRPEQTIN	9	Unmodified	_IHRPEQTIN_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.299560546875	2	554.298904	1106.58326	0.086522	4.7959E-05	0.18147	0.00010059	0.26799	0.00014854	554.2988795358211	22.322	0.46173	22.272	22.005	22.467	-0.049377					23	15	2	0	0	0	0.31763	1	3092	3092		6.2058	0.47393	1	68432	+		14546	16705;23038	8190	8190	18475	18475					0.034227620777755874
IHRPEQTIN	9	Unmodified	_IHRPEQTIN_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	554.298904	1106.58326	0.21235	0.0001177	0.19999	0.00011086	0.41234	0.00022856	554.2989989631744	22.255	0.45885	22.255	22.017	22.476	0	0.031187	0.00013932	NaN	6.2058	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92759	+		14547	16705;23038	8190	8190							0.034227620777755874
IHRPEQTIN	9	Unmodified	_IHRPEQTIN_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	554.298904	1106.58326	0.2633	0.00014595	-0.17936	-9.9418E-05	0.083938	4.6527E-05	554.2986953658913	22.244	0.5031	22.144	21.968	22.471	-0.10034	-0.079827	-0.00028123	NaN	6.2058	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77476	+		14548	16705;23038	8190	8190							0.034227620777755874
IHRQRRFQK	9	Unmodified	_IHRQRRFQK_					0	0	0		ENST00000446425.2_1_2:24199858-24205795:+|nuORF;ENST00000479859.1_1_2:24199858-24199963:+|nuORF	ENST00000446425.2_1_2:24199858-24205795:+|nuORF	ENST00000446425.2_1_2:24199858-24205795:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.8756713867188	2	634.875979	1267.73741	0.27839	0.00017674	-0.97631	-0.00061984	-0.69793	-0.0004431	634.875384679991	18.391	0.46626	18.274	18.065	18.531	-0.11739					32	15	3	0	0	0	0.35563	1	1982	1982		0.52476	0	1	124890			14549	10596	8191	8191	18476	18476					0.114246363537859
IHSKQSIYKE	10	Unmodified	_IHSKQSIYKE_					0	0	0		ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	ENSG00000215529|ENST00000400522|EFCAB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.8356323242188	2	616.83532	1231.65609	0.40151	0.00024766	-0.048542	-2.9942E-05	0.35296	0.00021772	616.8353051348573	35.913	1.1357	35.999	35.73	36.865	0.08625					125	40	5	0	0	0	0.29637	2	7192	7192;7348		29.841	4.5899	1	8295600			14550	8410	8192	8192	18477;18478	18477					0.0495247108053718
IHSQGKTSIMA	11	Unmodified	_IHSQGKTSIMA_					0	0	0			REV__ENSG00000175518|ENST00000380184|UBQLNL	REV__ENSG00000175518|ENST00000380184|UBQLNL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.808349609375	2	586.808248	1171.60194	0.30109	0.00017668	0.67753	0.00039758	0.97862	0.00057426	586.8082484621843	43.126	1.7087	43.126	42.33	44.039	0					140	62	3	0	0	0	0.25499	2	9568	9546;9568		26.268	4.5215	1	730440	+		14551	17894	8193	8193	18479;18480	18480					0.02300555657325276
IHSQGKTSIMA	11	Unmodified	_IHSQGKTSIMA_					0	0	0			REV__ENSG00000175518|ENST00000380184|UBQLNL	REV__ENSG00000175518|ENST00000380184|UBQLNL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.80859375	2	586.808248	1171.60194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.028	1	42.028	41.528	42.528	0								0	0	0	0.12653	1	9110	9110		41.956	0.11592	1		+		14552	17894	8193	8193	18481	18481					0.02300555657325276
IHSQGKTSIMA	11	Unmodified	_IHSQGKTSIMA_					0	0	0			REV__ENSG00000175518|ENST00000380184|UBQLNL	REV__ENSG00000175518|ENST00000380184|UBQLNL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8087768554688	2	586.808248	1171.60194	0.19943	0.00011703	0.99883	0.00058612	1.1983	0.00070315	586.8087981989601	41.392	0.76139	41.482	40.85	41.611	0.090252					60	28	3	0	0	0	0.12239	2	8873	8873;8928		38.176	5.8701	1	818240	+		14553	17894	8193	8193	18482;18483	18482					0.02300555657325276
IHSQGKTSIMA	11	Unmodified	_IHSQGKTSIMA_					0	0	0			REV__ENSG00000175518|ENST00000380184|UBQLNL	REV__ENSG00000175518|ENST00000380184|UBQLNL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8089599609375	2	586.808248	1171.60194	0.2642	0.00015503	1.0205	0.00059887	1.2847	0.0007539	586.8086584578151	41.187	0.85973	41.283	40.721	41.581	0.096626					65	31	3	0	0	0	0.12239	2	8862	8814;8862		38.176	6.9072	1	512560	+		14554	17894	8193	8193	18484;18485	18485					0.02300555657325276
IHSQGKTSIMA	11	Unmodified	_IHSQGKTSIMA_					0	0	0			REV__ENSG00000175518|ENST00000380184|UBQLNL	REV__ENSG00000175518|ENST00000380184|UBQLNL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8084106445312	2	586.808248	1171.60194	0.2644	0.00015515	0.49624	0.0002912	0.76063	0.00044634	586.808186799495	42.703	1.7988	42.794	41.784	43.583	0.091362					134	64	3	0	0	0	0.15851	1	9376	9376		34.932	2.6266	1	657760	+		14555	17894	8193	8193	18486	18486					0.02300555657325276
IHSQGKTSIMA	11	Unmodified	_IHSQGKTSIMA_					0	0	0			REV__ENSG00000175518|ENST00000380184|UBQLNL	REV__ENSG00000175518|ENST00000380184|UBQLNL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.810546875	2	586.808248	1171.60194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.633	1	41.73	41.23	42.23	0.096626								0	0	0	0.094377	1	8984	8984		45.7	3.86	1		+		14556	17894	8193	8193	18487	18487					0.02300555657325276
IHSQGKTSIMA	11	Unmodified	_IHSQGKTSIMA_					0	0	0			REV__ENSG00000175518|ENST00000380184|UBQLNL	REV__ENSG00000175518|ENST00000380184|UBQLNL	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	586.808248	1171.60194	0.21113	0.0001239	1.2149	0.00071293	1.4261	0.00083682	586.808963994419	41.521	0.52038	41.521	41.01	41.531	0	0.09225	0.0002044	NaN	38.176	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1329700	+		14557	17894	8193	8193							0.02300555657325276
IHSQGKTSIMA	11	Unmodified	_IHSQGKTSIMA_					0	0	0			REV__ENSG00000175518|ENST00000380184|UBQLNL	REV__ENSG00000175518|ENST00000380184|UBQLNL	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	586.808248	1171.60194	0.2642	0.00015503	1.0205	0.00059887	1.2847	0.0007539	586.8086584578151	41.187	0.85973	41.283	40.721	41.581	0.096626	-0.14543	-2.3723E-05	NaN	38.176	65	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	512560	+		14558	17894	8193	8193							0.02300555657325276
IHSSTHTLSQ	10	Unmodified	_IHSSTHTLSQ_					0	0	0		L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|56|2|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|56|2|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|56|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2709350585938	2	555.780544	1109.54654	0.38946	0.00021645	1.1274	0.00062658	1.5168	0.00084303	555.7806080615634	30.388	0.4768	30.416	30.189	30.665	0.027948					38	16	3	0	0	0	0.31358	1	5522	5522		13.906	1.6654	1	245700			14559	12437	8194	8194	18488	18488					-0.0038553453880467714
IHSSTHTLSQ	10	Unmodified	_IHSSTHTLSQ_					0	0	0		L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|56|2|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|56|2|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|56|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2713623046875	2	555.780544	1109.54654	-0.030673	-1.7047E-05	1.5085	0.00083841	1.4779	0.00082137	555.7809135250696	30.391	0.5602	30.418	30.109	30.669	0.027159					31	19	2	0	0	0	0.31691	1	5526	5526		9.3831	1.2276	1	220130			14560	12437	8194	8194	18489	18489					-0.0038553453880467714
IHTLEAQSSF	10	Unmodified	_IHTLEAQSSF_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3268432617188	2	566.785296	1131.55604	0.69268	0.0003926	-4.4362	-0.0025144	-3.7436	-0.0021218	566.7843724892541	50.789	0.26243	50.799	50.675	50.937	0.0095673					13	9	2	0	0	0	0.31165	1	11808	11808		15.847	1.0089	1	203140			14561	3524	8195	8195	18490	18490					-0.004477662532735849
IHTLELKLE	9	Unmodified	_IHTLELKLE_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2;ENST00000521436.5_1_8:22475932-22477192:+|nuORF;ENST00000520536.1_1_8:22475798-22477192:+|nuORF	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2449951171875	2	548.324057	1094.63356	0.56234	0.00030834	0.81205	0.00044527	1.3744	0.00075361	548.3245036155475	49.326	0.60115	49.326	48.97	49.572	0					49	21	3	0	0	0	0.2451	1	11298	11298		15.847	4.2069	1	344230			14562	5381	8196	8196	18491	18491					0.09002871682901059
IHTLELKLE	9	Unmodified	_IHTLELKLE_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2;ENST00000521436.5_1_8:22475932-22477192:+|nuORF;ENST00000520536.1_1_8:22475798-22477192:+|nuORF	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.2450561523438	2	548.324057	1094.63356	0.35552	0.00019494	1.0031	0.00055004	1.3587	0.00074499	548.324656361976	49.286	0.59119	49.318	48.983	49.574	0.032043					46	20	3	0	0	0	0.22596	1	11262	11262		21.747	4.8044	1	341550			14563	5381	8196	8196	18492	18492					0.09002871682901059
IHTVDHHPYK	10	Unmodified	_IHTVDHHPYK_					0	0	0			REV__ENST00000537992.5_1_7:20449736-20449868:+|nuORF	REV__ENST00000537992.5_1_7:20449736-20449868:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.215576171875	3	416.215761	1245.62546	0.11782	4.904E-05	-0.45701	-0.00019021	-0.33918	-0.00014117	416.21550112353066	22.369	1.3197	22.268	21.832	23.152	-0.10034					111	47	4	0	0	0	0.3179	1	3157	3157		8.9762	1.4992	1	576940	+		14564	22098	8197	8197	18493	18493					0.01246737486121674
IHTVDHHPYK	10	Unmodified	_IHTVDHHPYK_					0	0	0			REV__ENST00000537992.5_1_7:20449736-20449868:+|nuORF	REV__ENST00000537992.5_1_7:20449736-20449868:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	416.215761	1245.62546	-0.006337	-2.6376E-06	-0.1829	-7.6126E-05	-0.18924	-7.8763E-05	416.21555406045724	22.412	1.4428	22.367	21.835	23.277	-0.044865	0.038031	8.0505E-05	NaN	8.9762	124	51	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	408670	+		14565	22098	8197	8197							0.01246737486121674
IHVGDQLKVRT	11	Unmodified	_IHVGDQLKVRT_					0	0	0			REV__nc|ENSG00000183520|Q9Y3A2-2|UTP11	REV__nc|ENSG00000183520|Q9Y3A2-2|UTP11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3690185546875	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.66	1	114.67	114.17	115.17	0.016708								0	0	0	0.38126	1	29812	29812		1.1933	0.39971	1		+		14566	18268	8198	8198	18494	18494					0.1033955510006308
IHVWEPQECWR	11	Unmodified	_IHVWEPQECWR_					0	0	0			REV__ENSG00000131482|ENST00000253801|G6PC1	REV__ENSG00000131482|ENST00000253801|G6PC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2669677734375	3	494.903078	1481.6874	0.35381	0.0001751	-0.32307	-0.00015989	0.030732	1.521E-05	494.90280804062013	16.725	0.31577	16.662	16.414	16.729	-0.062534					23	10	3	0	0	0	0.33346	1	1383	1383		0.50596	0	1	38452	+		14567	15521	8199	8199	18495	18495					-0.03417279157042685
IHYCRATV	8	Unmodified	_IHYCRATV_					0	0	0		nc|ENSG00000163832|Q0PNE2-2|ELP6;ENSG00000163832|ENST00000296149|ELP6	nc|ENSG00000163832|Q0PNE2-2|ELP6	nc|ENSG00000163832|Q0PNE2-2|ELP6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7542419433594	2	481.747462	961.480371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.387	1	14.32	13.82	14.82	-0.066068								0	0	0	0.35466	1	709	709		12.532	3.9383	1				14568	5742	8200	8200	18496	18496					-0.0019102191455431239
IHYIVFAF	8	Unmodified	_IHYIVFAF_					0	0	0		ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.97479248046875	2	505.278921	1008.54329	0.085378	4.3139E-05	-4.0228	-0.0020326	-3.9374	-0.0019895	505.2767180531399	105.51	0.065384	105.51	105.48	105.54	-0.0027847					11	8	2	0	0	0	0.31651	1	27958	27958		2.8892	0	1	70402			14569	1152	8201	8201	18497	18497					0.03935867145139582
IHYLDIVDC	9	Unmodified	_IHYLDIVDC_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2957153320312	2	545.765517	1089.51648	0.39363	0.00021483	0.37194	0.00020299	0.76557	0.00041782	545.7656861140341	17.673	0.39742	17.556	17.414	17.812	-0.11739					21	13	2	0	0	0	0.26117	1	1743	1743		2.3027	0	1	30454			14570	5186;12769	8202	8202	18498	18498					-0.02469609528361616
IIAFVLEGK	9	Unmodified	_IIAFVLEGK_					0	0	0		nc|ENSG00000152291|O43493-6|TGOLN2;nc|ENSG00000152291|O43493-4|TGOLN2;ENSG00000152291|ENST00000377386|TGOLN2;nc|ENSG00000152291|O43493-5|TGOLN2;nc|ENSG00000152291|O43493-3|TGOLN2;nc|ENSG00000152291|O43493-7|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.3045654296875	2	495.305136	988.595718	0.48613	0.00024078	-1.0964	-0.00054304	-0.61025	-0.00030226	495.3045611014557	58.247	1.0117	58.247	57.88	58.891	0					66	34	3	0	0	0	0.014206	2	14152	14100;14152		72.968	15.246	1	1003800			14571	5013	8203	8203	18499;18500	18500					0.10096405488081928
IIAFVLEGK	9	Unmodified	_IIAFVLEGK_					0	0	0		nc|ENSG00000152291|O43493-6|TGOLN2;nc|ENSG00000152291|O43493-4|TGOLN2;ENSG00000152291|ENST00000377386|TGOLN2;nc|ENSG00000152291|O43493-5|TGOLN2;nc|ENSG00000152291|O43493-3|TGOLN2;nc|ENSG00000152291|O43493-7|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.30523681640625	2	495.305136	988.595718	0.4453	0.00022056	-1.0182	-0.00050434	-0.57294	-0.00028378	495.30454174121917	58.127	0.97848	58.212	57.891	58.87	0.085617					73	34	3	0	0	0	0.0098873	2	14052	14052;14101		79.596	13.14	1	928430			14572	5013	8203	8203	18501;18502	18501					0.10096405488081928
IIAFVLEGK	9	Unmodified	_IIAFVLEGK_					0	0	0		nc|ENSG00000152291|O43493-6|TGOLN2;nc|ENSG00000152291|O43493-4|TGOLN2;ENSG00000152291|ENST00000377386|TGOLN2;nc|ENSG00000152291|O43493-5|TGOLN2;nc|ENSG00000152291|O43493-3|TGOLN2;nc|ENSG00000152291|O43493-7|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	nc|ENSG00000152291|O43493-6|TGOLN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.30517578125	2	495.305136	988.595718	0.69318	0.00034333	-1.0345	-0.00051241	-0.34135	-0.00016907	495.30455344962803	58.255	0.8518	58.238	58.005	58.857	-0.017197					63	30	3	0	0	0	0.014206	1	14095	14095		72.968	6.5113	1	1043800			14573	5013	8203	8203	18503	18503					0.10096405488081928
IIAFVPLSK	9	Unmodified	_IIAFVPLSK_					0	0	0			REV__nc|ENSG00000155659|Q9Y279-3|VSIG4	REV__nc|ENSG00000155659|Q9Y279-3|VSIG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.3049011230469	2	494.315503	986.616454	0.76456	0.00037793	-2.5708	-0.0012708	-1.8062	-0.00089285	494.314143288502	58.481	0.41312	58.466	58.195	58.608	-0.014267					26	14	3	0	0	0	0.2616	1	14143	14143		14.582	1.0738	1	169760	+		14574	16706	8204	8204	18504	18504					0.12260995867745805
IIAFVPLSK	9	Unmodified	_IIAFVPLSK_					0	0	0			REV__nc|ENSG00000155659|Q9Y279-3|VSIG4	REV__nc|ENSG00000155659|Q9Y279-3|VSIG4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	494.315503	986.616454	0.53243	0.00026319	-2.0479	-0.0010123	-1.5155	-0.00074914	494.3143466881893	58.465	0.35416	58.465	58.328	58.682	0	-0.00053929	0.00023797	NaN	14.582	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202140	+		14575	16706	8204	8204							0.12260995867745805
IIAFVPLSK	9	Unmodified	_IIAFVPLSK_					0	0	0			REV__nc|ENSG00000155659|Q9Y279-3|VSIG4	REV__nc|ENSG00000155659|Q9Y279-3|VSIG4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	494.315503	986.616454	0.76456	0.00037793	-2.5708	-0.0012708	-1.8062	-0.00089285	494.314143288502	58.481	0.41312	58.466	58.195	58.608	-0.014267	0.00053929	-0.00027892	NaN	14.582	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169760	+		14576	16706	8204	8204							0.12260995867745805
IIAKIQQV	8	Unmodified	_IIAKIQQV_					0	0	0		ENST00000483315.1_1_21:33975401-33976611:-|nuORF	ENST00000483315.1_1_21:33975401-33976611:-|nuORF	ENST00000483315.1_1_21:33975401-33976611:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2899169921875	2	456.797478	911.580402	0.28961	0.00013229	-0.048092	-2.1968E-05	0.24151	0.00011032	456.7975799932079	58.796	0.30918	58.782	58.608	58.917	-0.014267					14	10	2	0	0	0	0.30503	1	14245	14245		30.225	5.5509	1	125890			14577	11059	8205	8205	18505	18505					0.1210753869089558
IIAKSLKNK	9	Unmodified	_IIAKSLKNK_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.7882080078125	2	507.837134	1013.65972	-0.061226	-3.1093E-05	0.43393	0.00022037	0.3727	0.00018927	507.8374641814317	14.114	0.12085	14.048	13.949	14.07	-0.066067					5	3	2	0	0	0	0.26031	1	623	623		3.5965	0	1	40512			14578	5917	8206	8206	18506	18506					0.15343185645042468
IIAPRSLKL	9	Unmodified	_IIAPRSLKL_					0	0	0			REV__CON__P06868	REV__CON__P06868	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8523864746094	2	505.839677	1009.6648	0.085402	4.32E-05	-0.44439	-0.00022479	-0.35899	-0.00018159	505.83937389399296	46.463	0.54309	46.463	46.246	46.789	0					32	19	2	0	0	0	0.25706	1	10421	10421		6.7232	0	1	540970	+	+	14579	13253	8207	8207	18507	18507					0.16035489507646616
IIASWTITI	9	Unmodified	_IIASWTITI_					0	0	0		nc|ENSG00000174970|Q8NH19|OR10AG1;ENSG00000174970|ENST00000641071|OR10AG1	nc|ENSG00000174970|Q8NH19|OR10AG1	nc|ENSG00000174970|Q8NH19|OR10AG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3025817871094	2	509.302593	1016.59063	0.34125	0.0001738	0.047091	2.3984E-05	0.38834	0.00019779	509.30254491948915	87.532	1.102	87.619	87.142	88.244	0.087097					149	57	3	0	0	0	0.055495	1	23143	23143		50.855	4.8341	1	956080			14580	6832	8208	8208	18508	18508					0.08300101625468415
IICLFPTVI	9	Unmodified	_IICLFPTVI_					0	0	0			REV__ENSG00000171459|ENST00000304720|OR1L6	REV__ENSG00000171459|ENST00000304720|OR1L6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8038330078125	2	509.803914	1017.59328	0.42826	0.00021833	-0.35251	-0.00017971	0.075749	3.8617E-05	509.8036382599112	74.281	2.861	74.281	72.534	75.395	0					173	101	3	0	0	0	0.20344	3	18779	18686;18779;18892		23.148	12.532	1	1842200	+		14581	17638	8209	8209	18509;18510;18511	18510					0.08518233758763927
IICLFPTVI	9	Unmodified	_IICLFPTVI_					0	0	0			REV__ENSG00000171459|ENST00000304720|OR1L6	REV__ENSG00000171459|ENST00000304720|OR1L6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8040466308594	2	509.803914	1017.59328	0.2354	0.00012001	-0.11861	-6.0466E-05	0.1168	5.9543E-05	509.80377964624006	74.358	2.6692	74.41	72.68	75.349	0.052361					188	95	3	0	0	0	0.24581	2	18700	18655;18700		16.942	3.4344	1	2312800	+		14582	17638	8209	8209	18512;18513	18513					0.08518233758763927
IICLFPTVI	9	Unmodified	_IICLFPTVI_					0	0	0			REV__ENSG00000171459|ENST00000304720|OR1L6	REV__ENSG00000171459|ENST00000304720|OR1L6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8043212890625	2	509.803914	1017.59328	0.36866	0.00018795	-0.12705	-6.4768E-05	0.24162	0.00012318	509.803738168651	74.265	2.9138	74.235	72.454	75.367	-0.030655					196	105	3	0	0	0	0.30623	1	18680	18680		7.9102	0.62092	1	2074000	+		14583	17638	8209	8209	18514	18514					0.08518233758763927
IICTRVRNS	9	Unmodified	_IICTRVRNS_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.81689453125	2	531.29785	1060.58115	0.40961	0.00021762	-0.56849	-0.00030204	-0.15888	-8.4413E-05	531.2971880683037	76.392	1.3012	76.392	75.903	77.204	0					95	47	3	0	0	0	0.26612	1	19808	19808		13.906	0.86358	1	1246300			14584	6248	8210	8210	18515	18515					0.05328010068296862
IICTRVRNS	9	Unmodified	_IICTRVRNS_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8170166015625	2	531.29785	1060.58115	0.21093	0.00011207	-1.2511	-0.00066473	-1.0402	-0.00055266	531.2972365509039	76.33	1.3163	76.384	75.862	77.178	0.053413					120	46	4	0	0	0	0.24467	1	19786	19786		17.113	3.2068	1	1396100			14585	6248	8210	8210	18516	18516					0.05328010068296862
IIDANERE	8	Unmodified	_IIDANERE_					0	0	0			REV__nc|ENSG00000160072|Q5T9A4-2|ATAD3B	REV__nc|ENSG00000160072|Q5T9A4-2|ATAD3B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2557678222656	2	480.243264	958.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.717	1	70.717	70.217	71.217	0								0	0	0	0.33432	1	17937	17937		21.747	3.6003	1		+		14586	16877	8211	8211	18517	18517					-0.008922973501853448
IIDANERE	8	Unmodified	_IIDANERE_					0	0	0			REV__nc|ENSG00000160072|Q5T9A4-2|ATAD3B	REV__nc|ENSG00000160072|Q5T9A4-2|ATAD3B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2558898925781	2	480.243264	958.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.769	1	70.744	70.244	71.244	-0.024872								0	0	0	0.34734	1	17940	17940		15.847	4.2069	1		+		14587	16877	8211	8211	18518	18518					-0.008922973501853448
IIDDYDDEE	9	Unmodified	_IIDDYDDEE_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.33984375	2	563.724766	1125.43498	0.3795	0.00021393	-0.66901	-0.00037714	-0.28951	-0.00016321	563.724369245105	49.614	0.81798	49.614	49.05	49.868	0					50	29	2	0	0	0	0.26117	1	11289	11289		2.3027	0.4585	1	185080	+		14588	22330	8212	8212	18519	18519					-0.12272058477265091
IIDPRMAVHIF	11	Unmodified	_IIDPRMAVHIF_					0	0	0			REV__ENST00000445099.2_1_9:90431423-90431870:+|nuORF	REV__ENST00000445099.2_1_9:90431423-90431870:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2674865722656	3	437.912914	1310.71691	-0.0076794	-3.3629E-06	2.429	0.0010637	2.4213	0.0010603	438.24796962507287	46.619	0.33131	46.619	46.458	46.789	0					15	11	2	0	0	0	0.3266	1	10506	10506		7.4771	6.7794	1	142450	+		14589	21072	8213	8213	18520	18520					0.07398284859095838
IIEPVYSAFM	10	Unmodified	_IIEPVYSAFM_					0	0	0			REV__nc|ENSG00000156113|Q12791-5|KCNMA1	REV__nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.299072265625	2	585.299193	1168.58383	0.20203	0.00011825	-1.2339	-0.00072217	-1.0318	-0.00060393	585.2989928530284	93.766	0.87701	93.852	93.525	94.402	0.086678					143	68	3	0	0	0	0.33817	1	24984	24984		14.838	0.93222	1	241860	+		14590	16731	8214	8214	18521	18521					0.006284206825739602
IIERVREES	9	Unmodified	_IIERVREES_					0	0	0			REV__nc|ENSG00000048392|Q7LG56-3|RRM2B	REV__nc|ENSG00000048392|Q7LG56-3|RRM2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7631225585938	2	565.811845	1129.60914	0.23338	0.00013205	-0.8149	-0.00046108	-0.58152	-0.00032903	565.8124528809433	52.219	0.38533	52.219	51.969	52.354	0					29	13	4	0	0	0	0.21389	1	12251	12251		25.399	3.6527	1	165470	+		14591	13548	8215	8215	18522	18522					0.049516115293727125
IIERVREES	9	Unmodified	_IIERVREES_					0	0	0			REV__nc|ENSG00000048392|Q7LG56-3|RRM2B	REV__nc|ENSG00000048392|Q7LG56-3|RRM2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.7632446289062	2	565.811845	1129.60914	0.40511	0.00022922	0.41374	0.0002341	0.81885	0.00046332	566.3132827459722	52.121	0.27254	52.171	52.009	52.282	0.050571					16	9	2	0	0	0	0.21389	1	12230	12230		25.399	3.6527	1	207610	+		14592	13548	8215	8215	18523	18523					0.049516115293727125
IIERVREES	9	Unmodified	_IIERVREES_					0	0	0			REV__nc|ENSG00000048392|Q7LG56-3|RRM2B	REV__nc|ENSG00000048392|Q7LG56-3|RRM2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7631225585938	2	565.811845	1129.60914	0.088321	4.9973E-05	1.6238	0.00091874	1.7121	0.00096871	565.8127891024182	52.322	0.40632	52.321	52.034	52.44	-0.00080872					23	14	2	0	0	0	0.21389	1	12276	12276		25.399	3.6527	1	165120	+		14593	13548	8215	8215	18524	18524					0.049516115293727125
IIFDIPPE	8	Unmodified	_IIFDIPPE_					0	0	0		ENSG00000110975|ENST00000228567|SYT10;nc|ENSG00000134207|Q5T7P8-2|SYT6;ENSG00000134207|ENST00000610222|SYT6	ENSG00000110975|ENST00000228567|SYT10	ENSG00000110975|ENST00000228567|SYT10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2835693359375	2	472.260394	942.506234	0.033914	1.6016E-05	2.8344	0.0013386	2.8683	0.0013546	472.26236166274583	92.479	0.25793	92.479	92.342	92.6	0					33	20	2	0	0	0	0.3366	1	24632	24632		18.135	1.1927	1	78602			14594	2340	8216	8216	18525	18525					0.03268150808696646
IIFDRPLLY	9	Unmodified	_IIFDRPLLY_					0	0	0		ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8164672851562	2	575.336967	1148.65938	0.30786	0.00017713	0.19203	0.00011048	0.49989	0.00028761	575.337155747808	68.889	0.33099	68.889	68.675	69.006	0					20	11	2	0	0	0	0.18936	1	17401	17401		32.786	3.7041	1	290750			14595	6855	8217	8217	18526	18526					0.09099765925202519
IIFDRPLLY	9	Unmodified	_IIFDRPLLY_					0	0	0		ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3370971679688	2	575.336967	1148.65938	0.44916	0.00025842	0.21723	0.00012498	0.66639	0.0003834	575.3370039772524	68.835	0.36694	68.907	68.677	69.044	0.071938					22	13	2	0	0	0	0.073988	1	17362	17362		43.982	22.235	1	364360			14596	6855	8217	8217	18527	18527					0.09099765925202519
IIFDRPLLY	9	Unmodified	_IIFDRPLLY_					0	0	0		ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3374633789062	2	575.336967	1148.65938	0.26055	0.00014991	0.41674	0.00023977	0.6773	0.00038967	575.3372117469997	68.916	0.34947	68.897	68.68	69.029	-0.01915					23	12	2	0	0	0	0.11201	1	17387	17387		36.506	13.358	1	312620			14597	6855	8217	8217	18528	18528					0.09099765925202519
IIFEQIRFV	9	Unmodified	_IIFEQIRFV_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3056640625	2	582.842416	1163.67028	0.34026	0.00019832	0.24599	0.00014337	0.58625	0.00034169	582.842648160746	73.111	0.45374	73.111	72.881	73.335	0					25	15	2	0	0	0	0.17263	1	18668	18668		38.615	21.502	1	160530			14598	719	8218	8218	18529	18529					0.09499168299475969
IIFEQIRFV	9	Unmodified	_IIFEQIRFV_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3056030273438	2	582.842416	1163.67028	0.21658	0.00012623	0.1959	0.00011418	0.41249	0.00024041	582.8426610188918	73.028	0.41101	73.082	72.898	73.309	0.053833					29	14	3	0	0	0	0.17263	1	18654	18654		38.615	21.502	1	183790			14599	719	8218	8218	18530	18530					0.09499168299475969
IIFEQIRFV	9	Unmodified	_IIFEQIRFV_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3057250976562	2	582.842416	1163.67028	0.43362	0.00025273	0.02048	1.1937E-05	0.4541	0.00026467	582.8425595466892	73.151	0.38804	73.122	72.927	73.315	-0.029305					26	13	3	0	0	0	0.17263	1	18643	18643		38.615	21.502	1	160320			14600	719	8218	8218	18531	18531					0.09499168299475969
IIFFFTGPLAH	11	Unmodified	_IIFFFTGPLAH_					0	0	0			REV__ENSG00000181458|ENST00000323523|TMEM45A	REV__ENSG00000181458|ENST00000323523|TMEM45A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5774230957031	3	421.569253	1261.68593	-0.11213	-4.7269E-05	0.53551	0.00022575	0.42338	0.00017849	421.5694231533343	15.968	0.13739	15.905	15.838	15.975	-0.062534					6	4	2	0	0	0	0.33219	1	1173	1173		1.4551	0.12547	1	15368	+		14601	18149	8219	8219	18532	18532					0.06555454816520978
IIFGLSTLK	9	Unmodified	_IIFGLSTLK_					0	0	0			REV__ENSG00000164604|ENST00000424100|GPR85	REV__ENSG00000164604|ENST00000424100|GPR85	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.31304931640625	2	496.312961	990.611368	0.30278	0.00015028	-0.13484	-6.6925E-05	0.16794	8.3351E-05	496.3127859113225	61.853	0.98315	61.853	61.569	62.552	0					86	36	4	0	0	0	0.0046246	2	15224	15182;15224		89.401	20.296	1	2304300	+		14602	17168	8220	8220	18533;18534	18534					0.11568692005141656
IIFGLSTLK	9	Unmodified	_IIFGLSTLK_					0	0	0			REV__ENSG00000164604|ENST00000424100|GPR85	REV__ENSG00000164604|ENST00000424100|GPR85	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3131103515625	2	496.312961	990.611368	-0.023009	-1.142E-05	0.26907	0.00013354	0.24606	0.00012212	496.3129802624534	61.742	1.1512	61.839	61.538	62.689	0.096985					88	41	4	0	0	0	0.0059482	2	15180	15135;15180		85.642	20.406	1	2413500	+		14603	17168	8220	8220	18535;18536	18536					0.11568692005141656
IIFGLSTLK	9	Unmodified	_IIFGLSTLK_					0	0	0			REV__ENSG00000164604|ENST00000424100|GPR85	REV__ENSG00000164604|ENST00000424100|GPR85	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3128356933594	2	496.312961	990.611368	0.041624	2.0659E-05	0.11275	5.5957E-05	0.15437	7.6616E-05	496.3129090112499	61.796	0.93692	61.788	61.528	62.465	-0.0085526					81	33	4	0	0	0	0.018449	2	15172	15172;15223		66.457	18.708	1	2540300	+		14604	17168	8220	8220	18537;18538	18537					0.11568692005141656
IIFGLSTLK	9	Unmodified	_IIFGLSTLK_					0	0	0			REV__ENSG00000164604|ENST00000424100|GPR85	REV__ENSG00000164604|ENST00000424100|GPR85	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	496.312961	990.611368	0.30278	0.00015028	-0.13484	-6.6925E-05	0.16794	8.3351E-05	496.3127859113225	61.853	0.98315	61.853	61.569	62.552	0	0.026099	-0.00021564	NaN	89.401	86	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2304300	+		14605	17168	8220	8220							0.11568692005141656
IIFGLSTLK	9	Unmodified	_IIFGLSTLK_					0	0	0			REV__ENSG00000164604|ENST00000424100|GPR85	REV__ENSG00000164604|ENST00000424100|GPR85	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	496.312961	990.611368	-0.023009	-1.142E-05	0.26907	0.00013354	0.24606	0.00012212	496.3129802624534	61.742	1.1512	61.839	61.538	62.689	0.096985	0.012701	0.00018529	NaN	89.401	88	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2413500	+		14606	17168	8220	8220							0.11568692005141656
IIFGLSTLK	9	Unmodified	_IIFGLSTLK_					0	0	0			REV__ENSG00000164604|ENST00000424100|GPR85	REV__ENSG00000164604|ENST00000424100|GPR85	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	496.312961	990.611368	0.041624	2.0659E-05	0.11275	5.5957E-05	0.15437	7.6616E-05	496.3129090112499	61.796	0.93692	61.788	61.528	62.465	-0.0085526	-0.038801	3.0121E-05	NaN	89.401	81	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2540300	+		14607	17168	8220	8220							0.11568692005141656
IIFPLVDLWGP	11	Unmodified	_IIFPLVDLWGP_					0	0	0			REV__ENSG00000154269|ENST00000357639|ENPP3	REV__ENSG00000154269|ENST00000357639|ENPP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	635.366943359375	2	635.365724	1268.7169	0.62139	0.00039481	-0.39925	-0.00025367	0.22214	0.00014114	635.365364815122	47.231	0.66643	47.231	46.992	47.658	0					47	23	3	0	0	0	0.41411	2	10705	10705;10768		9.3831	2.2814	1	233960	+		14608	16657	8221	8221	18539;18540	18539					0.09328608130726934
IIFPLVDLWGP	11	Unmodified	_IIFPLVDLWGP_					0	0	0			REV__ENSG00000154269|ENST00000357639|ENPP3	REV__ENSG00000154269|ENST00000357639|ENPP3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	635.365724	1268.7169	0.62139	0.00039481	-0.39925	-0.00025367	0.22214	0.00014114	635.365364815122	47.231	0.66643	47.231	46.992	47.658	0	-0.054242	0.00050562	NaN	9.3831	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233960	+		14609	16657	8221	8221							0.09328608130726934
IIFPLVDLWGP	11	Unmodified	_IIFPLVDLWGP_					0	0	0			REV__ENSG00000154269|ENST00000357639|ENPP3	REV__ENSG00000154269|ENST00000357639|ENPP3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	635.365724	1268.7169	0.48747	0.00030972	-0.53091	-0.00033732	-0.043447	-2.7605E-05	635.3653853721468	47.276	0.55642	47.329	47.014	47.57	0.05257	0.043665	0.00033831	NaN	9.3831	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293190	+		14610	16657	8221	8221							0.09328608130726934
IIFPLVDLWGP	11	Unmodified	_IIFPLVDLWGP_					0	0	0			REV__ENSG00000154269|ENST00000357639|ENPP3	REV__ENSG00000154269|ENST00000357639|ENPP3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	635.365724	1268.7169	1.1803	0.00074989	-1.1981	-0.00076122	-0.017832	-1.133E-05	635.3649938531607	47.241	0.50508	47.296	47.117	47.622	0.054375	0.010577	-0.00050949	NaN	9.3831	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230650	+		14611	16657	8221	8221							0.09328608130726934
IIFWEKTV	8	Unmodified	_IIFWEKTV_					0	0	0			REV__ENSG00000113269|ENST00000521389|RNF130	REV__ENSG00000113269|ENST00000521389|RNF130	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7798461914062	2	518.29731	1034.58007	0.38716	0.00020067	2.2456	0.0011639	2.6327	0.0013645	518.2987829690065	59.067	0.44616	59.052	58.831	59.278	-0.014267					25	15	2	0	0	0	0.31088	1	14360	14360		10.824	0	1	431060	+		14612	14801	8222	8222	18541	18541					0.06416118971037577
IIGDLMWLLL	10	Unmodified	_IIGDLMWLLL_					0	0	0			REV__ENST00000556434.5_1_14:50394420-50412914:-|nuORF	REV__ENST00000556434.5_1_14:50394420-50412914:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8343505859375	2	593.848853	1185.68315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.176	1	50.221	49.721	50.721	0.044891								0	0	0	0.35754	1	11616	11616		11.64	0.14559	1		+		14613	22257	8223	8223	18542	18542					0.09773863367331614
IIGILQLAF	9	Unmodified	_IIGILQLAF_					0	0	0		ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.3029479980469	2	494.315503	986.616454	0.76637	0.00037883	-1.9534	-0.0009656	-1.187	-0.00058677	494.3145846031239	60.611	0.4953	60.611	60.441	60.936	0					24	17	2	0	0	0	0.2616	1	14929	14929		14.582	5.2343	1	290420			14614	4087	8224	8224	18543	18543					0.12260995867757174
IIGLPLVYLIL	11	Unmodified	_IIGLPLVYLIL_					0	0	0			REV__ENSG00000185149|ENST00000329476|NPY2R	REV__ENSG00000185149|ENST00000329476|NPY2R	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.60797119140625	3	409.608937	1225.80498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.52	1	55.52	55.02	56.02	0								0	0	0	0.34903	1	13266	13266		8.4443	0	1		+		14615	18359	8225	8225	18544	18544					0.20111228721384578
IIGRLLEV	8	Unmodified	_IIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7974853515625	2	456.797478	911.580402	0.36088	0.00016485	-0.24618	-0.00011245	0.11469	5.2392E-05	456.7973397911894	55.669	2.175	55.669	55.35	57.525	0					151	79	4	0	0	0	0.029711	4	13307	13259;13307;13355;13400		88.954	27.596	1	9185500			14616	6643	8226	8226	18545;18546;18547;18548	18546					0.1210753869090695
IIGRLLEV	8	Unmodified	_IIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7975158691406	2	456.797478	911.580402	0.44397	0.00020281	-0.31574	-0.00014423	0.12823	5.8576E-05	456.7973113217156	55.605	2.1287	55.676	55.347	57.476	0.070885					150	78	4	0	0	0	0.029711	4	13293	13246;13293;13340;13406		88.954	27.596	1	9289200			14617	6643	8226	8226	18549;18550;18551;18552	18550					0.1210753869090695
IIGRLLEV	8	Unmodified	_IIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7975769042969	2	456.797478	911.580402	0.42979	0.00019633	-0.22505	-0.0001028	0.20473	9.3522E-05	456.79732727266776	55.75	2.3868	55.731	55.379	57.765	-0.019081					159	87	4	0	0	0	0.029711	5	13315	13270;13315;13364;13408;13456		88.954	27.596	1	8834300			14618	6643	8226	8226	18553;18554;18555;18556;18557	18554					0.1210753869090695
IIGSLWDKER	10	Unmodified	_IIGSLWDKER_					0	0	0		ENSG00000129673|ENST00000392492|AANAT;nc|ENSG00000129673|Q16613-2|AANAT	ENSG00000129673|ENST00000392492|AANAT	ENSG00000129673|ENST00000392492|AANAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8377685546875	2	608.837862	1215.66117	-0.013757	-8.376E-06	-0.033989	-2.0694E-05	-0.047747	-2.907E-05	608.8376537357569	105.7	0.97192	105.7	105.33	106.3	0					340	139	3	0	0	0	0.39009	1	28018	28018		5.2969	1.7004	1	931180			14619	3435	8227	8227	18558	18558					0.06196774943123273
IIGTIFIIK	9	Unmodified	_IIGTIFIIK_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3391418457031	2	509.338978	1016.6634	0.31531	0.0001606	-0.040212	-2.0482E-05	0.27509	0.00014012	509.3390696123774	67.544	3.9644	67.544	67.193	71.157	0					340	143	5	0	0	0	9.2305E-05	4	16935	16935;16987;17029;17169		142.08	42.281	1	17206000			14620	8212	8228	8228	18559;18560;18561;18562	18559					0.1557385541890426
IIGTIFIIK	9	Unmodified	_IIGTIFIIK_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.339111328125	2	509.338978	1016.6634	0.33722	0.00017176	-0.086774	-4.4197E-05	0.25044	0.00012756	509.3390352348149	67.451	3.191	67.529	67.094	70.285	0.078041					297	114	5	0	0	0	0.0010463	5	16890	16890;16941;16983;17029;17190		122.18	40.289	1	16788000			14621	8212	8228	8228	18563;18564;18565;18566;18567	18563					0.1557385541890426
IIGTIFIIK	9	Unmodified	_IIGTIFIIK_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3391418457031	2	509.338978	1016.6634	0.18734	9.5422E-05	0.11167	5.6877E-05	0.29901	0.0001523	509.3391408322879	67.561	3.8523	67.545	67.181	71.033	-0.016296					324	137	5	0	0	0	9.2305E-05	5	16928	16928;16979;17031;17130;17190		142.08	42.281	1	18600000			14622	8212	8228	8228	18568;18569;18570;18571;18572	18568					0.1557385541890426
IIHEESFF	8	Unmodified	_IIHEESFF_					0	0	0		ENST00000427704.6_1_6:144150070-144150364:+|nuORF	ENST00000427704.6_1_6:144150070-144150364:+|nuORF	ENST00000427704.6_1_6:144150070-144150364:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.25238037109375	2	511.2531	1020.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.355	1	92.355	91.855	92.855	0								0	0	0	0.36169	1	24560	24560		9.3474	4.1168	1				14623	10437	8229	8229	18573	18573					-0.01777921339430577
IIHEESFF	8	Unmodified	_IIHEESFF_					0	0	0		ENST00000427704.6_1_6:144150070-144150364:+|nuORF	ENST00000427704.6_1_6:144150070-144150364:+|nuORF	ENST00000427704.6_1_6:144150070-144150364:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.25390625	2	511.2531	1020.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.64	1	114.62	114.12	115.12	-0.019096								0	0	0	0.37664	1	29757	29757		2.5775	0	1				14624	10437	8229	8229	18574	18574					-0.01777921339430577
IIHEESFF	8	Unmodified	_IIHEESFF_					0	0	0		ENST00000427704.6_1_6:144150070-144150364:+|nuORF	ENST00000427704.6_1_6:144150070-144150364:+|nuORF	ENST00000427704.6_1_6:144150070-144150364:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2542724609375	2	511.2531	1020.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.59	1	119.56	119.06	120.06	-0.024361								0	0	0	0.37664	1	30867	30867		2.5775	0	1				14625	10437	8229	8229	18575	18575					-0.01777921339430577
IIHEESFF	8	Unmodified	_IIHEESFF_					0	0	0		ENST00000427704.6_1_6:144150070-144150364:+|nuORF	ENST00000427704.6_1_6:144150070-144150364:+|nuORF	ENST00000427704.6_1_6:144150070-144150364:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2526550292969	2	511.2531	1020.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.618	1	91.619	91.119	92.119	0.00046539								0	0	0	0.36961	1	24327	24327		5.7604	0.028577	1				14626	10437	8229	8229	18576	18576					-0.01777921339430577
IIHEESFF	8	Unmodified	_IIHEESFF_					0	0	0		ENST00000427704.6_1_6:144150070-144150364:+|nuORF	ENST00000427704.6_1_6:144150070-144150364:+|nuORF	ENST00000427704.6_1_6:144150070-144150364:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.25408935546875	2	511.2531	1020.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.13	1	116.15	115.65	116.65	0.020988								0	0	0	0.37664	1	30140	30140		2.5775	0	1				14627	10437	8229	8229	18577	18577					-0.01777921339430577
IIHEESFF	8	Unmodified	_IIHEESFF_					0	0	0		ENST00000427704.6_1_6:144150070-144150364:+|nuORF	ENST00000427704.6_1_6:144150070-144150364:+|nuORF	ENST00000427704.6_1_6:144150070-144150364:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2542724609375	2	511.2531	1020.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.45	1	118.48	117.98	118.98	0.026253								0	0	0	0.37664	1	30673	30673		2.5775	0	1				14628	10437	8229	8229	18578	18578					-0.01777921339430577
IIHGHIDIV	9	Unmodified	_IIHGHIDIV_					0	0	0			REV__ENST00000459905.5_1_9:139835382-139837220:-|nuORF	REV__ENST00000459905.5_1_9:139835382-139837220:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7273254394531	2	508.798009	1015.58147	0.29546	0.00015033	3.593	0.0018281	3.8884	0.0019784	509.30242057891394	81.042	0.10722	81.042	80.979	81.086	0					7	4	2	0	0	0	0.25879	1	21077	21077		4.756	0.42677	1	47463	+		14629	16832	8230	8230	18579	18579					0.07429753059795985
IIHPWGPCLLP	11	Unmodified	_IIHPWGPCLLP_					0	0	0		nc|ENSG00000154639|P78310-4|CXADR;nc|ENSG00000154639|P78310-5|CXADR	nc|ENSG00000154639|P78310-4|CXADR	nc|ENSG00000154639|P78310-4|CXADR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.893798828125	2	623.344269	1244.67399	0.13341	8.3161E-05	-1.3704	-0.00085426	-1.237	-0.0007711	623.3431261041645	72.741	0.40825	72.795	72.601	73.01	0.053833					19	14	2	0	0	0	0.33046	1	18555	18555		6.7232	0	1	123410			14630	12768	8231	8231	18580	18580					0.061435148016698804
IIHVRNDKQF	10	Unmodified	_IIHVRNDKQF_					0	0	0			REV__ENST00000334421.5_1_5:180630399-180630450:-|nuORF	REV__ENST00000334421.5_1_5:180630399-180630450:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.20660400390625	3	423.906928	1268.69895	-1.7073	-0.00072372	-0.28046	-0.00011889	-1.9877	-0.00084261	423.9068912755927	34.783	0.54662	34.858	34.604	35.151	0.075306					29	19	2	0	0	0	0.31994	1	6985	6985		5.4027	2.9042	1	209400	+		14631	20061	8232	8232	18581	18581					0.07535285928588564
IIIDKLDL	8	Unmodified	_IIIDKLDL_					0	0	0			REV__nc|ENSG00000155719|Q7RTW8-4|OTOA	REV__nc|ENSG00000155719|Q7RTW8-4|OTOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.78662109375	2	471.797143	941.579734	0.54072	0.00025511	-0.51765	-0.00024422	0.023074	1.0886E-05	471.79685263997357	78.058	0.59319	78.058	77.822	78.415	0					37	21	2	0	0	0	0.23736	1	20230	20230		37.974	3.8716	1	309590	+		14632	16707	8233	8233	18582	18582					0.10660699251184269
IIILKKRYSI	10	Unmodified	_IIILKKRYSI_					0	0	0		nc|ENSG00000205060|Q969S0-2|SLC35B4;nc|ENSG00000205060|Q969S0-3|SLC35B4;ENSG00000205060|ENST00000378509|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.9161376953125	2	623.915916	1245.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.94	1	103.94	103.44	104.44	0								0	0	0	0.38201	1	27602	27602		0.45834	0	1				14633	8268	8234	8234	18583	18583					0.2042026518442981
IIIQPVVVK	9	Unmodified	_IIIQPVVVK_					0	0	0			REV__ENST00000565890.1_1_16:89724550-89735902:+|nuORF	REV__ENST00000565890.1_1_16:89724550-89735902:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.3421325683594	2	504.844428	1007.6743	0.54409	0.00027468	-2.7676	-0.0013972	-2.2235	-0.0011225	504.84426159299676	74.386	1.5364	74.386	73.998	75.534	0					139	53	5	0	0	0	0.32733	1	18983	18983		4.756	0.42677	1	6508000	+		14634	17389	8235	8235	18584	18584					0.17077257793187073
IIIYLGPMV	9	Unmodified	_IIIYLGPMV_					0	0	0		ENSG00000101290|ENST00000460006|CDS2;ENST00000486875.1_1_20:5107738-5156066:+|nuORF;ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2;ENST00000468817.5_1_20:5109393-5167506:+|nuORF	ENSG00000101290|ENST00000460006|CDS2	ENSG00000101290|ENST00000460006|CDS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.80426025390625	2	509.803914	1017.59328	0.35113	0.00017901	-0.44889	-0.00022885	-0.097764	-4.984E-05	509.8036251944592	79.352	1.8785	79.414	79.141	81.02	0.061417					166	76	4	0	0	0	0.29662	1	20792	20792		9.3474	0.75416	1	1437200			14635	1679	8236	8236	18585	18585					0.08518233758775295
IIKGISVHIS	10	Unmodified	_IIKGISVHIS_					0	0	0		ENSG00000120948|ENST00000240185|TARDBP;nc|ENSG00000120948|Q13148-4|TARDBP	ENSG00000120948|ENST00000240185|TARDBP	ENSG00000120948|ENST00000240185|TARDBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.308349609375	2	533.834591	1065.65463	0.11162	5.9587E-05	0.5175	0.00027626	0.62912	0.00033585	533.8346845108412	65.44	0.35146	65.528	65.38	65.732	0.088882					19	12	2	0	0	0	0.31847	1	16276	16276		3.5965	3.5965	1	138970			14636	2976	8237	8237	18586	18586					0.12442881782430959
IIKISNSTFKI	11	Unmodified	_IIKISNSTFKI_					0	0	0		ENST00000445930.6_1_14:53194439-53194556:+|nuORF	ENST00000445930.6_1_14:53194439-53194556:+|nuORF	ENST00000445930.6_1_14:53194439-53194556:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.53497314453125	3	421.927218	1262.75982	-0.37218	-0.00015703	-1.9671	-0.00082997	-2.3393	-0.000987	421.9262641449371	27.738	0.39566	27.726	27.527	27.923	-0.01156					20	13	2	0	0	0	0.33094	1	4783	4783		7.4771	2.4295	1	86556			14637	10590	8238	8238	18587	18587					0.13895378188180985
IIKKKQKH	8	Unmodified	_IIKKKQKH_					0	0	0		ENSG00000233670|ENST00000580256|PIRT	ENSG00000233670|ENST00000580256|PIRT	ENSG00000233670|ENST00000580256|PIRT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.28466796875	2	511.845294	1021.67603	0.24739	0.00012663	0.55335	0.00028323	0.80074	0.00040985	511.8451941303171	52.985	0.29447	52.975	52.761	53.056	-0.0096054					11	10	2	0	0	0	0.34319	1	12414	12414		5.7604	1.0044	1	63129			14638	8481	8239	8239	18588	18588					0.16606311601799462
IILCKKSQP	9	Unmodified	_IILCKKSQP_					0	0	0		nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43;nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.Y1031Lfs*2|1|0.43|ENSG00000197748|chr10:104164248-104164249|-/A|frameshift_variant;nc|ENSG00000197748|Q8NDM7-5|CFAP43;nc|ENSG00000197748|Q8NDM7-4|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.8211669921875	2	515.309895	1028.60524	0.22037	0.00011356	0.94063	0.00048472	1.161	0.00059828	515.8115729670549	62.391	1.93	62.383	61.505	63.435	-0.0085526					145	70	4	0	0	0	0.22596	1	15453	15453		21.747	0.20967	1	894100			14639	7996	8240	8240	18589	18589					0.0920785050197992
IILLTQVSPA	10	Unmodified	_IILLTQVSPA_					0	0	0		ENSG00000175398|ENST00000309675|OR10P1	ENSG00000175398|ENST00000309675|OR10P1	ENSG00000175398|ENST00000309675|OR10P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.8196411132812	2	527.828975	1053.6434	0.59333	0.00031317	0.75529	0.00039866	1.3486	0.00071184	527.8296007838748	45.089	0.96138	45.157	44.867	45.828	0.068569					117	33	5	0	0	0	0.37133	1	10130	10130		8.7454	0.15213	1	3839700			14640	6862	8241	8241	18590	18590					0.11872059688289482
IILPLLFAML	10	Unmodified	_IILPLLFAML_					0	0	0			REV__ENST00000438435.6_1_1:181003152-181006146:+|nuORF	REV__ENST00000438435.6_1_1:181003152-181006146:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.7914428710938	2	572.364139	1142.71372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.1	1	114.11	113.61	114.61	0.016708								0	0	0	0.3808	1	29677	29677		1.8442	0	1		+		14641	16607	8242	8242	18591	18591					0.14807641752395284
IILQERFLYA	10	Unmodified	_IILQERFLYA_					0	0	0		ENSG00000138823|ENST00000265517|MTTP	ENSG00000138823|ENST00000265517|MTTP	ENSG00000138823|ENST00000265517|MTTP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.370849609375	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.7	1	105.7	105.2	106.2	0								0	0	0	0.37664	1	27979	27979		3.5965	0.60125	1				14642	4201	8243	8243	18592	18592					0.09618822499669477
IILSKMMLM	9	3 Oxidation (M)	_IILSKM(Oxidation (M))M(Oxidation (M))LM(Oxidation (M))_		IILSKM(1)M(1)LM(1)		IILSKM(56)M(56)LM(56)	0	0	3		ENSG00000008394|ENST00000396210|MGST1;ENST00000537878.5_1_12:16500588-16507345:+|nuORF;nc|ENSG00000008394|P10620-2|MGST1;ENST00000539708.5_1_12:16507186-16513330:+|nuORF;ENST00000539036.5_1_12:16500588-16536519:+|nuORF;ENST00000538857.1_1_12:16507186-16536519:+|nuORF	ENSG00000008394|ENST00000396210|MGST1	ENSG00000008394|ENST00000396210|MGST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.2969970703125	2	564.297281	1126.58001	0.26118	0.00014738	-0.0104	-5.8689E-06	0.25078	0.00014151	564.2971827431296	39	1.2609	39.092	38.862	40.123	0.09267					65	44	2	0	0	0	0.041175	1	8423	8423		56.177	33.441	1	669280			14643	396	8244	8244	18593	18593		36;37;38			0.021782915928724833
IILSKMMLM	9	3 Oxidation (M)	_IILSKM(Oxidation (M))M(Oxidation (M))LM(Oxidation (M))_		IILSKM(1)M(1)LM(1)		IILSKM(46)M(46)LM(46)	0	0	3		ENSG00000008394|ENST00000396210|MGST1;ENST00000537878.5_1_12:16500588-16507345:+|nuORF;nc|ENSG00000008394|P10620-2|MGST1;ENST00000539708.5_1_12:16507186-16513330:+|nuORF;ENST00000539036.5_1_12:16500588-16536519:+|nuORF;ENST00000538857.1_1_12:16507186-16536519:+|nuORF	ENSG00000008394|ENST00000396210|MGST1	ENSG00000008394|ENST00000396210|MGST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.297607421875	2	564.297281	1126.58001	0.37313	0.00021056	-0.17476	-9.8615E-05	0.19838	0.00011194	564.2972172211774	39.007	1.4199	39.106	38.81	40.23	0.099407					85	50	3	0	0	0	0.069366	1	8179	8179		45.7	7.0849	1	688080			14644	396	8244	8244	18594	18594		36;37;38			0.021782915928724833
IILVPSTIKS	10	Unmodified	_IILVPSTIKS_					0	0	0			REV__ENSG00000129968|ENST00000292577|ABHD17A	REV__ENSG00000129968|ENST00000292577|ABHD17A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7705688476562	2	535.844625	1069.6747	1.1339	0.00060759	0.0093598	5.0154E-06	1.1432	0.0006126	535.8445358136013	47.277	0.31922	47.331	47.093	47.412	0.054375					23	11	3	0	0	0	0.31794	1	10713	10713		8.1555	8.1555	1	345840	+		14645	15435	8245	8245	18595	18595					0.14264632722370152
IIMKFYSI	8	Unmodified	_IIMKFYSI_					0	0	0		ENST00000540817.1_1_2:44571042-44588692:-|nuORF	ENST00000540817.1_1_2:44571042-44588692:-|nuORF	ENST00000540817.1_1_2:44571042-44588692:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.78045654296875	2	507.788264	1013.56198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.859	1	71.832	71.332	72.332	-0.027275								0	0	0	0.33941	1	18275	18275		19.439	2.4967	1				14646	11726	8246	8246	18596	18596					0.05573660724689944
IIMLLKNF	8	Unmodified	_IIMLLKNF_					0	0	0		nc|ENSG00000095627|Q9BXT4-2|TDRD1;ENSG00000095627|ENST00000695399|TDRD1;nc|ENSG00000095627|Q9BXT4-3|TDRD1	nc|ENSG00000095627|Q9BXT4-2|TDRD1	nc|ENSG00000095627|Q9BXT4-2|TDRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.30389404296875	2	496.304081	990.59361	0.41687	0.0002069	-0.18064	-8.9651E-05	0.23624	0.00011725	496.30387669744533	74.068	3.1764	74.068	73.191	76.367	0					302	112	4	0	0	0	0.44842	1	18758	18758		6.3541	0	1	4670700			14647	1454	8247	8247	18597	18597					0.09793653478629949
IINANSNYKRV	11	Unmodified	_IINANSNYKRV_					0	0	0			REV__ENSG00000118407|ENST00000237172|FILIP1	REV__ENSG00000118407|ENST00000237172|FILIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	648.3642578125	2	646.359493	1290.70443	0.17175	0.00011101	-0.29584	-0.00019122	-0.12409	-8.0207E-05	646.3595955395996	103.61	0.60604	103.61	103.53	104.13	0.0082626					252	83	5	0	0	0	0.46475	1	27571	27571		2.7352	0.23671	1	7080200	+		14648	15009	8248	8248	18598	18598					0.0707096472037847
IINEVVLKL	9	Unmodified	_IINEVVLKL_					0	0	0		nc|ENSG00000186283|Q9H497-3|TOR3A;nc|ENSG00000186283|Q9H497-2|TOR3A;ENSG00000186283|ENST00000367627|TOR3A	nc|ENSG00000186283|Q9H497-3|TOR3A	nc|ENSG00000186283|Q9H497-3|TOR3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2665405273438	2	520.839342	1039.66413	0.47387	0.00024681	-0.50955	-0.00026539	-0.035683	-1.8585E-05	520.8390685250073	62.242	0.80437	62.242	61.971	62.776	0					68	29	3	0	0	0	0.1558	1	15313	15313		41.956	7.5538	1	1111500			14649	7606	8249	8249	18599	18599					0.14588650067935305
IINEVVLKL	9	Unmodified	_IINEVVLKL_					0	0	0		nc|ENSG00000186283|Q9H497-3|TOR3A;nc|ENSG00000186283|Q9H497-2|TOR3A;ENSG00000186283|ENST00000367627|TOR3A	nc|ENSG00000186283|Q9H497-3|TOR3A	nc|ENSG00000186283|Q9H497-3|TOR3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2664184570312	2	520.839342	1039.66413	0.31658	0.00016489	-0.18505	-9.6381E-05	0.13153	6.8508E-05	520.8391376505367	62.159	1.0133	62.256	62.004	63.017	0.096985					71	36	3	0	0	0	0.099099	1	15284	15284		55.503	13.663	1	1037300			14650	7606	8249	8249	18600	18600					0.14588650067935305
IINEVVLKL	9	Unmodified	_IINEVVLKL_					0	0	0		nc|ENSG00000186283|Q9H497-3|TOR3A;nc|ENSG00000186283|Q9H497-2|TOR3A;ENSG00000186283|ENST00000367627|TOR3A	nc|ENSG00000186283|Q9H497-3|TOR3A	nc|ENSG00000186283|Q9H497-3|TOR3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2666015625	2	520.839342	1039.66413	0.39764	0.00020711	-0.23424	-0.000122	0.16339	8.5102E-05	520.8391132886004	62.237	0.929	62.228	61.931	62.86	-0.0085564					68	34	3	0	0	0	0.18479	1	15303	15303		34.932	7.3033	1	1061400			14651	7606	8249	8249	18601	18601					0.14588650067935305
IINKPTAAAI	10	Unmodified	_IINKPTAAAI_					0	0	0		ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENST00000442006.2_1_1:39174637-39175513:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.3135681152344	2	506.313492	1010.61243	0.30664	0.00015525	-0.24209	-0.00012257	0.064547	3.2681E-05	506.3133638909481	57.157	0.68274	57.235	56.909	57.591	0.078674					69	24	4	0	0	0	0.27059	1	13832	13832		24.021	6.9077	1	1961500			14652	10560	8250	8250	18602	18602					0.10754906374006623
IINLEEVN	8	Unmodified	_IINLEEVN_					0	0	0		nc|ENSG00000148187|Q96E11-7|MRRF;nc|ENSG00000148187|Q96E11-5|MRRF;nc|ENSG00000148187|Q96E11-6|MRRF;ENST00000373728.6_1_9:125027203-125047581:+|nuORF;nc|ENSG00000148187|Q96E11-4|MRRF;nc|ENSG00000148187|Q96E11-2|MRRF;nc|ENSG00000148187|Q96E11-3|MRRF;ENSG00000148187|ENST00000344641|MRRF;ENST00000435941.1_1_X:122250823-122251621:-|nuORF	nc|ENSG00000148187|Q96E11-7|MRRF	nc|ENSG00000148187|Q96E11-7|MRRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.7719421386719	2	472.258382	942.502212	0.2571	0.00012142	0.32221	0.00015216	0.5793	0.00027358	472.2575192681091	32.471	0.16237	32.525	32.441	32.603	0.054371					8	5	2	0	0	0	0.33993	1	6176	6176		16.942	3.4344	1	35413			14653	4795	8251	8251	18603	18603					0.02866061315000934
IINNDMNVL	9	Unmodified	_IINNDMNVL_					0	0	0			REV__nc|ENSG00000158055|Q8TE85-4|GRHL3	REV__nc|ENSG00000158055|Q8TE85-4|GRHL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2642822265625	2	523.270967	1044.52738	0.56405	0.00029515	-0.717	-0.00037518	-0.15295	-8.0035E-05	523.2705994938141	53.047	1.232	53.047	52.767	53.999	0					72	45	3	0	0	0	0.27726	1	12503	12503		12.241	0.60036	1	2506000	+		14654	16801	8252	8252	18604	18604					0.006897928459238756
IINNKCTAF	9	Unmodified	_IINNKCTAF_					0	0	0			REV__ENST00000281141.8_1_10:12292344-12292536:+|nuORF	REV__ENST00000281141.8_1_10:12292344-12292536:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2867431640625	2	512.268227	1022.5219	0.53101	0.00027202	-1.4223	-0.00072859	-0.89127	-0.00045657	512.267499396953	48.591	0.73359	48.635	48.255	48.989	0.044891					59	26	3	0	0	0	0.26879	1	11100	11100		13.508	0	1	853340	+		14655	19711	8253	8253	18605	18605					0.01154114054099864
IINNKCTAF	9	Unmodified	_IINNKCTAF_					0	0	0			REV__ENST00000281141.8_1_10:12292344-12292536:+|nuORF	REV__ENST00000281141.8_1_10:12292344-12292536:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	512.268227	1022.5219	0.45037	0.00023071	-1.8307	-0.00093783	-1.3804	-0.00070712	512.2673643378248	48.691	0.84438	48.691	48.205	49.05	0	0.038049	-0.00030804	NaN	13.508	50	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	730380	+		14656	19711	8253	8253							0.01154114054099864
IINNKCTAF	9	Unmodified	_IINNKCTAF_					0	0	0			REV__ENST00000281141.8_1_10:12292344-12292536:+|nuORF	REV__ENST00000281141.8_1_10:12292344-12292536:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	512.268227	1022.5219	0.53101	0.00027202	-1.4223	-0.00072859	-0.89127	-0.00045657	512.267499396953	48.591	0.73359	48.635	48.255	48.989	0.044891	-0.017464	0.00011045	NaN	13.508	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	853340	+		14657	19711	8253	8253							0.01154114054099864
IINSNPIEL	9	Unmodified	_IINSNPIEL_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2972106933594	2	506.787307	1011.56006	0.19574	9.9198E-05	0.20137	0.00010205	0.39711	0.00020125	506.7873425217328	61.784	0.51394	61.784	61.537	62.051	0					35	18	3	0	0	0	0.16853	1	15196	15196		31.268	3.6395	1	249070			14658	1049	8254	8254	18606	18606					0.05474323240423473
IINSSITTK	9	Unmodified	_IINSSITTK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7873840332031	2	488.787307	975.560061	0.20712	0.00010124	0.55064	0.00026914	0.75775	0.00037038	488.7873152662568	26.627	0.94476	26.627	26.379	27.324	0					104	32	6	0	0	0	0.037402	1	4395	4395		81.915	25.738	1	1433600			14659	5683	8255	8255	18607	18607					0.07130323240414782
IINSSITTK	9	Unmodified	_IINSSITTK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.787353515625	2	488.787307	975.560061	0.23874	0.00011669	0.18177	8.8845E-05	0.4205	0.00020554	488.7872762528573	26.611	0.95782	26.572	26.316	27.274	-0.038671					88	33	4	0	0	0	0.045138	1	4433	4433		79.427	25.594	1	1468400			14660	5683	8255	8255	18608	18608					0.07130323240414782
IINSSITTK	9	Unmodified	_IINSSITTK_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.78741455078125	2	488.787307	975.560061	0.47504	0.0002322	0.44004	0.00021509	0.91509	0.00044728	488.7871653171705	26.629	0.9233	26.607	26.356	27.28	-0.022238					108	32	6	0	0	0	0.063898	1	4469	4469		47.732	16.464	1	1354500			14661	5683	8255	8255	18609	18609					0.07130323240414782
IINTHTLLL	9	Unmodified	_IINTHTLLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.3214111328125	2	519.321317	1036.62808	0.40131	0.00020841	-0.061039	-3.1699E-05	0.34027	0.00017671	519.3212945845376	57.755	2.2935	57.755	57.435	59.728	0					184	80	4	0	0	0	0.0013683	5	13961	13961;14011;14059;14110;14136		118.07	39.34	1	9073800			14662	4321	8256	8256	18610;18611;18612;18613;18614	18610					0.11123192891091094
IINTHTLLL	9	Unmodified	_IINTHTLLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3214721679688	2	519.321317	1036.62808	0.37267	0.00019354	-0.18074	-9.3863E-05	0.19193	9.9674E-05	519.321267659886	57.646	1.716	57.732	57.404	59.12	0.085621					157	61	5	0	0	0	0.00045155	5	13920	13870;13920;13969;14020;14064		129.77	40.818	1	8671400			14663	4321	8256	8256	18615;18616;18617;18618;18619	18616					0.11123192891091094
IINTHTLLL	9	Unmodified	_IINTHTLLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.3214111328125	2	519.321317	1036.62808	0.2989	0.00015523	0.12739	6.6156E-05	0.42629	0.00022138	519.3214119607374	57.758	2.366	57.741	57.416	59.782	-0.0172					181	85	3	0	0	0	0.0013683	5	13959	13913;13959;14010;14064;14115		118.07	39.34	1	8964400			14664	4321	8256	8256	18620;18621;18622;18623;18624	18621					0.11123192891091094
IIPALKRLS	9	Unmodified	_IIPALKRLS_					0	0	0		nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.8272399902344	2	505.839677	1009.6648	0.46569	0.00023556	1.0694	0.00054093	1.5351	0.0007765	505.84001335215333	38.915	0.75452	39.015	38.81	39.565	0.099407					34	26	2	0	0	0	0.24913	1	8099	8099		7.9102	1.187	1	311610			14665	12650	8257	8257	18625	18625					0.16035489507646616
IIPCLLISF	9	Unmodified	_IIPCLLISF_					0	0	0		ENSG00000080644|ENST00000326828|CHRNA3;nc|ENSG00000080644|P32297-1|CHRNA3;nc|ENSG00000080644|P32297-3|CHRNA3	ENSG00000080644|ENST00000326828|CHRNA3	ENSG00000080644|ENST00000326828|CHRNA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8039855957031	2	509.803914	1017.59328	0.44345	0.00022607	-0.15903	-8.1072E-05	0.28442	0.000145	509.80377434116815	88.775	1.2674	88.775	88.273	89.541	0					136	62	3	0	0	0	0.24311	1	23557	23557		16.942	9.0321	1	448110			14666	1163	8258	8258	18626	18626					0.08518233758775295
IIPCLLISF	9	Unmodified	_IIPCLLISF_					0	0	0		ENSG00000080644|ENST00000326828|CHRNA3;nc|ENSG00000080644|P32297-1|CHRNA3;nc|ENSG00000080644|P32297-3|CHRNA3	ENSG00000080644|ENST00000326828|CHRNA3	ENSG00000080644|ENST00000326828|CHRNA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.80401611328125	2	509.803914	1017.59328	0.34613	0.00017646	0.004175	2.1284E-06	0.35031	0.00017859	509.8038821588643	88.709	1.0586	88.798	88.246	89.304	0.089195					97	45	3	0	0	0	0.31038	1	23506	23506		7.2892	0	1	550170			14667	1163	8258	8258	18627	18627					0.08518233758775295
IIPCLLISF	9	Unmodified	_IIPCLLISF_					0	0	0		ENSG00000080644|ENST00000326828|CHRNA3;nc|ENSG00000080644|P32297-1|CHRNA3;nc|ENSG00000080644|P32297-3|CHRNA3	ENSG00000080644|ENST00000326828|CHRNA3	ENSG00000080644|ENST00000326828|CHRNA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2828369140625	2	509.803914	1017.59328	0.34335	0.00017504	0.52047	0.00026534	0.86382	0.00044038	509.8039555347915	89.263	0.79619	89.354	89.168	89.964	0.090569					86	54	2	0	0	0	0.25622	1	23593	23593		7.2892	0	1	104320			14668	1163	8258	8258	18628	18628					0.08518233758775295
IIPGHPATFL	10	Unmodified	_IIPGHPATFL_					0	0	0		nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.8060913085938	2	533.30821	1064.60187	0.50698	0.00027038	-1.2115	-0.0006461	-0.7045	-0.00037572	533.3074988421226	58.074	2.4568	58.074	57.246	59.702	0					167	86	4	0	0	0	0.2291	1	14274	14274		39.957	7.6518	1	12546000			14669	7627	8259	8259	18629	18629					0.07214923719607214
IIPGHPATFL	10	Unmodified	_IIPGHPATFL_					0	0	0		nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	533.30821	1064.60187	0.37487	0.00019992	-1.1927	-0.00063607	-0.81781	-0.00043615	533.3075219199558	57.896	1.858	57.982	57.571	59.429	0.085621	-0.069452	7.9671E-05	NaN	39.957	150	66	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13641000			14670	7627	8259	8259							0.07214923719607214
IIPGHPATFL	10	Unmodified	_IIPGHPATFL_					0	0	0		nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	533.30821	1064.60187	0.68427	0.00036493	-1.388	-0.00074023	-0.70373	-0.0003753	533.3074269867102	58.115	2.1032	58.098	57.741	59.844	-0.0172	0.046763	-0.00012865	NaN	39.957	156	75	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13680000			14671	7627	8259	8259							0.07214923719607214
IIPLEHYM	8	Unmodified	_IIPLEHYM_					0	0	0		ENSG00000205593|ENST00000413817|DENND6B;ENST00000495607.5_1_22:50750570-50752368:-|nuORF	ENSG00000205593|ENST00000413817|DENND6B	ENSG00000205593|ENST00000413817|DENND6B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8105163574219	2	508.267696	1014.52084	0.064622	3.2845E-05	-2.3565	-0.0011978	-2.2919	-0.0011649	508.2659138138394	65.27	0.10242	65.27	65.19	65.293	0					5	3	2	0	0	0	0.34185	1	16280	16280		10.183	0	1	52881			14672	8297	8260	8260	18630	18630					0.014158996851961092
IIPTIMATI	9	Unmodified	_IIPTIMATI_					0	0	0		ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7919921875	2	486.793546	971.57254	0.42237	0.00020561	-0.60146	-0.00029279	-0.17908	-8.7176E-05	486.7918570947932	87.937	1.5582	87.937	87.093	88.651	0					178	77	4	0	0	0	0.068501	1	23204	23204		46.021	0	1	447950			14673	8121	8261	8261	18631	18631					0.08561643379107409
IIPVKKCF	8	Unmodified	_IIPVKKCF_					0	0	0			REV__ENSG00000173156|ENST00000308831|RHOD	REV__ENSG00000173156|ENST00000308831|RHOD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2909240722656	2	474.290974	946.567395	0.11852	5.6214E-05	-0.015725	-7.458E-06	0.1028	4.8756E-05	474.29087456331933	73.091	2.012	73.091	72.667	74.679	0					175	70	4	0	0	0	0.45942	2	18561	18561;19085		2.5775	2.5775	1	1679500	+		14674	17763	8262	8262	18632;18633	18632					0.09197384307151424
IIREAPVLL	9	Unmodified	_IIREAPVLL_					0	0	0		ENST00000600987.1_1_19:16954983-16957229:+|nuORF	ENST00000600987.1_1_19:16954983-16957229:+|nuORF	ENST00000600987.1_1_19:16954983-16957229:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.8132934570312	2	512.331685	1022.64882	0.49427	0.00025323	-0.28203	-0.00014449	0.21224	0.00010874	512.3314323218435	65.775	0.48463	65.864	65.628	66.113	0.088882					34	17	3	0	0	0	0.2451	1	16387	16387		10.824	2.9138	1	371370			14675	12252	8263	8263	18634	18634					0.13839783270759654
IIREEAVLF	9	Unmodified	_IIREEAVLF_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3170166015625	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.61	1	112.6	112.1	113.1	-0.015625								0	0	0	0.25499	1	29290	29290		4.756	0.81161	1				14676	1866	8264	8264	18635	18635					0.08222889028456848
IIRGAHQN	8	Unmodified	_IIRGAHQN_					0	0	0		nc|ENSG00000101181|Q9H4K7-2|MTG2;ENSG00000101181|ENST00000370823|MTG2	nc|ENSG00000101181|Q9H4K7-2|MTG2	nc|ENSG00000101181|Q9H4K7-2|MTG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.74688720703125	2	454.756675	907.498798	0.16193	7.3637E-05	-1.7157	-0.00078022	-1.5538	-0.00070659	454.7557263804339	70.702	0.85829	70.702	70.325	71.183	0					42	30	2	0	0	0	0.34218	1	17839	17839		9.3474	0	1	169680			14677	1671	8265	8265	18636	18636					0.041348560516553334
IIRHGAKL	8	Unmodified	_IIRHGAKL_					0	0	0		ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB;ENST00000473073.1_1_3:136045962-136048865:+|nuORF	ENSG00000114054|ENST00000251654|PCCB	ENSG00000114054|ENST00000251654|PCCB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2953186035156	2	454.295436	906.57632	0.23328	0.00010598	-1.6837	-0.00076491	-1.4504	-0.00065893	454.2953576360948	53.168	2.6396	53.158	52.631	55.27	-0.0096054					237	97	4	0	0	0	0.33916	1	12573	12573		26.341	1.6674	1	6955500			14678	2543	8266	8266	18637	18637					0.11929493987850037
IIRKEEVKKP	10	Unmodified	_IIRKEEVKKP_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.93267822265625	3	413.930962	1238.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.182	1	38.279	37.779	38.779	0.097527								0	0	0	0.3794	1	7928	7928		2.4348	0.18206	1		+		14679	16705;23038	8267	8267	18638	18638					0.161222002823024
IISEPPSGVP	10	Unmodified	_IISEPPSGVP_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.2652893066406	2	498.274032	994.533512	0.36928	0.000184	0.10444	5.2041E-05	0.47373	0.00023605	498.2736666557352	39.794	0.52334	39.893	39.622	40.146	0.099407					51	18	4	0	0	0	0.31165	1	8495	8495		15.847	0	1	271400	+		14680	16599	8268	8268	18639	18639					0.03602634349101663
IISERPKQ	8	Unmodified	_IISERPKQ_					0	0	0			REV__ENSG00000149021|ENST00000278282|SCGB1A1	REV__ENSG00000149021|ENST00000278282|SCGB1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8004455566406	2	485.787641	969.56073	0.78383	0.00038077	1.2818	0.00062268	2.0656	0.0010035	485.7880933724163	50.767	0.37041	50.777	50.567	50.937	0.0095634					21	13	2	0	0	0	0.3671	1	11832	11832		23.148	1.4018	1	134210	+		14681	16448	8269	8269	18640	18640					0.07473162680139467
IISNIYHNF	9	Unmodified	_IISNIYHNF_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8056640625	2	560.792924	1119.57129	0.456	0.00025572	0.42781	0.00023991	0.88381	0.00049563	560.7927076466989	51.231	0.40186	51.231	51.055	51.456	0					21	14	2	0	0	0	0.16283	1	11962	11962		29.082	5.9332	1	176870			14682	511	8270	8270	18641	18641					0.016291453345502305
IISNIYHNF	9	Unmodified	_IISNIYHNF_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8054809570312	2	560.792924	1119.57129	0.34271	0.00019219	0.44044	0.00024699	0.78315	0.00043918	560.7927782067254	51.405	0.38829	51.415	51.145	51.533	0.0095634					20	14	2	0	0	0	0.088443	1	11973	11973		39.95	9.7249	1	162210			14683	511	8270	8270	18642	18642					0.016291453345502305
IISSSRRSL	9	Unmodified	_IISSSRRSL_					0	0	0		nc|ENSG00000134278|Q08AE8-3|SPIRE1;nc|ENSG00000134278|Q08AE8-5|SPIRE1;nc|ENSG00000134278|Q08AE8-2|SPIRE1;ENSG00000134278|ENST00000409402|SPIRE1;ENST00000498803.5_1_18:12449639-12452543:-|nuORF	nc|ENSG00000134278|Q08AE8-3|SPIRE1	nc|ENSG00000134278|Q08AE8-3|SPIRE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8035583496094	2	509.803823	1017.59309	0.44765	0.00022821	0.22145	0.0001129	0.6691	0.00034111	509.8037417538526	76.612	3.1368	76.581	75.342	78.479	-0.031479					358	115	5	0	0	0	0.25314	1	19389	19389		15.847	2.3393	1	9050300			14684	3770	8271	8271	18643	18643					0.08499950083148633
IISTVEVLK	9	Unmodified	_IISTVEVLK_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000531486.1_1_17:45681241-45696545:+|nuORF;ENST00000530514.5_1_17:45668242-45699283:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3152770996094	2	501.3157	1000.61685	0.27191	0.00013631	-1.4294	-0.00071657	-1.1575	-0.00058026	501.3147284028278	46.583	0.47077	46.583	46.402	46.873	0					39	16	4	0	0	0	0.10059	1	10533	10533		38.176	3.7738	1	628160			14685	4363	8272	8272	18644	18644					0.11656370796936244
IISTVEVLK	9	Unmodified	_IISTVEVLK_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000531486.1_1_17:45681241-45696545:+|nuORF;ENST00000530514.5_1_17:45668242-45699283:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.3155517578125	2	501.3157	1000.61685	0.51141	0.00025638	-0.9511	-0.0004768	-0.43969	-0.00022043	501.31509322048043	46.537	0.48794	46.589	46.358	46.846	0.052574					39	17	3	0	0	0	0.0054984	1	10507	10507		86.332	19.875	1	709130			14686	4363	8272	8272	18645	18645					0.11656370796936244
IISTVEVLK	9	Unmodified	_IISTVEVLK_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000531486.1_1_17:45681241-45696545:+|nuORF;ENST00000530514.5_1_17:45668242-45699283:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.3152160644531	2	501.3157	1000.61685	0.20533	0.00010294	-0.8377	-0.00041995	-0.63237	-0.00031702	501.3150153641893	46.57	0.49382	46.624	46.383	46.877	0.054371					38	17	3	0	0	0	0.15763	1	10516	10516		29.841	3.5724	1	765520			14687	4363	8272	8272	18646	18646					0.11656370796936244
IITKVKAKN	9	Unmodified	_IITKVKAKN_					0	0	0		ASXL2|p.E430Vfs*91|1|0.28|ENSG00000143970|chr2:25750264-25750267|CACT/-|frameshift_variant	ASXL2|p.E430Vfs*91|1|0.28|ENSG00000143970|chr2:25750264-25750267|CACT/-|frameshift_variant	ASXL2|p.E430Vfs*91|1|0.28|ENSG00000143970|chr2:25750264-25750267|CACT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7881774902344	2	507.837134	1013.65972	-0.00080112	-4.0684E-07	-0.0094559	-4.802E-06	-0.010257	-5.2089E-06	507.8368496762498	14.007	0.15354	14.007	13.932	14.086	0					5	4	2	0	0	0	0.26031	1	601	601		3.5965	0	1	41390			14688	60	8273	8273	18647	18647					0.15343185645042468
IITLTMLYIF	10	Unmodified	_IITLTMLYIF_					0	0	0		ENST00000479107.1_1_6:33035769-33035865:-|nuORF	ENST00000479107.1_1_6:33035769-33035865:-|nuORF	ENST00000479107.1_1_6:33035769-33035865:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.8878479003906	3	409.906766	1226.69847	-0.22704	-9.3067E-05	0.94517	0.00038743	0.71812	0.00029436	409.9070468007641	23.555	0.52137	23.555	23.336	23.857	0					24	17	2	0	0	0	0.3198	1	3488	3488		2.086	0	1	53673			14689	10988	8274	8274	18648	18648					0.09418730164520639
IITLTMLYIF	10	Unmodified	_IITLTMLYIF_					0	0	0		ENST00000479107.1_1_6:33035769-33035865:-|nuORF	ENST00000479107.1_1_6:33035769-33035865:-|nuORF	ENST00000479107.1_1_6:33035769-33035865:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.8878173828125	3	409.906766	1226.69847	0.16346	6.7003E-05	0.50003	0.00020497	0.66349	0.00027197	409.906701966629	23.8	0.46243	23.761	23.476	23.939	-0.038927					28	15	2	0	0	0	0.3198	1	3494	3494		4.1895	2.4472	1	50951			14690	10988	8274	8274	18649	18649					0.09418730164520639
IITSENFIFR	10	Unmodified	_IITSENFIFR_					0	0	0			REV__ENSG00000274209|ENST00000620264|ANTXRL	REV__ENSG00000274209|ENST00000620264|ANTXRL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.32958984375	2	620.340238	1238.66592	-0.13435	-8.3345E-05	-0.99706	-0.00061851	-1.1314	-0.00070186	620.3397280268285	101.71	0.1967	101.71	101.63	101.83	0					31	24	2	0	0	0	0.40943	1	27119	27119		3.5965	1.9439	1	44250	+		14691	19324	8275	8275	18650	18650					0.05613659085884137
IIVNRLLPS	9	Unmodified	_IIVNRLLPS_					0	0	0			REV__ENSG00000222018|ENST00000410005|C21orf140	REV__ENSG00000222018|ENST00000410005|C21orf140	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7550048828125	2	512.829309	1023.64407	0.49423	0.00025346	0.57969	0.00029728	1.0739	0.00055074	512.8295675261155	56.927	0.1388	56.908	56.865	57.004	-0.019081					6	4	2	0	0	0	0.2322	1	13714	13714		20.454	3.5113	1	49584	+		14692	19104	8276	8276	18651	18651					0.13318899127989425
IIVPFFNPA	9	Unmodified	_IIVPFFNPA_					0	0	0		ENSG00000186440|ENST00000641540|OR6P1	ENSG00000186440|ENST00000641540|OR6P1	ENSG00000186440|ENST00000641540|OR6P1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2936706542969	2	509.292028	1016.5695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.668	1	12.569	12.069	13.069	-0.099291								0	0	0	0.22789	1	197	197		13.508	2.684	1				14693	7615	8277	8277	18652	18652					0.06188136316609416
IIWFHVVPAA	10	Unmodified	_IIWFHVVPAA_					0	0	0		nc|ENSG00000148498|Q8TEW0-9|PARD3;nc|ENSG00000148498|Q8TEW0-8|PARD3;nc|ENSG00000148498|Q8TEW0-3|PARD3;nc|ENSG00000148498|Q8TEW0-7|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-4|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3;nc|ENSG00000148498|Q8TEW0-10|PARD3;nc|ENSG00000148498|Q8TEW0-5|PARD3	nc|ENSG00000148498|Q8TEW0-9|PARD3	nc|ENSG00000148498|Q8TEW0-9|PARD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3192138671875	2	576.831852	1151.64915	0.36074	0.00020809	-2.4962	-0.0014399	-2.1354	-0.0012318	576.8301805442012	45.19	0.40395	45.265	45.042	45.446	0.075047					31	14	3	0	0	0	0.31395	1	10026	10026		12.532	4.6214	1	887130			14694	4817	8278	8278	18653	18653					0.07939202990610283
IIYIFSWF	8	Unmodified	_IIYIFSWF_					0	0	0		ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3170776367188	2	544.794404	1087.57425	0.46515	0.00025341	-2.846	-0.0015505	-2.3809	-0.0012971	545.294588848296	91.351	0.2278	91.351	91.279	91.507	0					25	16	2	0	0	0	0.33995	1	24284	24284		15.768	7.0228	1	115250			14695	8325	8279	8279	18654	18654					0.03397020459374289
IIYIFSWF	8	Unmodified	_IIYIFSWF_					0	0	0		ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.81591796875	2	544.794404	1087.57425	0.47206	0.00025717	-2.4539	-0.0013369	-1.9819	-0.0010797	544.7928627397973	91.256	0.064049	91.256	91.215	91.279	0					7	5	2	0	0	0	0.34046	1	24220	24220		14.582	2.0501	1	111710			14696	8325	8279	8279	18655	18655					0.03397020459374289
IIYKHHLYNE	10	Unmodified	_IIYKHHLYNE_					0	0	0			REV__ENST00000345732.8_1_11:60237005-60237254:+|nuORF	REV__ENST00000345732.8_1_11:60237005-60237254:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.2794494628906	3	443.903183	1328.68772	0.12252	5.4387E-05	-2.735	-0.0012141	-2.6125	-0.0011597	444.2360505811508	33.132	0.61861	33.132	32.837	33.456	0					28	21	2	0	0	0	0.31911	1	6402	6402		6.6304	0	1	80288	+		14697	20148	8280	8280	18656	18656					0.036524638344872074
IIYLGPMVL	9	Unmodified	_IIYLGPMVL_					0	0	0		ENSG00000101290|ENST00000460006|CDS2;ENST00000486875.1_1_20:5107738-5156066:+|nuORF;ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2;ENST00000468817.5_1_20:5109393-5167506:+|nuORF	ENSG00000101290|ENST00000460006|CDS2	ENSG00000101290|ENST00000460006|CDS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8044738769531	2	509.803914	1017.59328	0.2354	0.00012001	-0.11861	-6.0466E-05	0.1168	5.9543E-05	509.80377964624006	74.358	2.6692	74.41	72.68	75.349	0.052361					188	95	3	0	0	0	0.29662	1	18650	18650		9.3474	1.4373	1	2312800			14698	1679	8281	8281	18657	18657					0.08518233758786664
IIYNFKASMRK	11	Unmodified	_IIYNFKASMRK_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.5919189453125	3	457.591952	1369.75403	0.0080425	3.6802E-06	-0.19374	-8.8652E-05	-0.18569	-8.4972E-05	457.59186257190294	24.145	1.1286	24.145	23.857	24.986	0					116	38	4	0	0	0	0.37764	2	3627	3627;3676		14.171	4.4065	1	493450	+		14699	15247	8282	8282	18658;18659	18658					0.08393956404847813
IIYNFKASMRK	11	Unmodified	_IIYNFKASMRK_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.5919189453125	3	457.591952	1369.75403	0.12869	5.8885E-05	-0.26783	-0.00012256	-0.13915	-6.3672E-05	457.5918191976202	24.364	1.4435	24.292	23.935	25.378	-0.072559					125	49	4	0	0	0	0.36722	1	3741	3741		15.538	2.0198	1	568400	+		14700	15247	8282	8282	18660	18660					0.08393956404847813
IIYNFKASMRK	11	Unmodified	_IIYNFKASMRK_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.5919494628906	3	457.591952	1369.75403	0.043875	2.0077E-05	-0.20007	-9.1551E-05	-0.1562	-7.1474E-05	457.59190515904766	24.308	1.2641	24.269	23.965	25.229	-0.038927					116	43	4	0	0	0	0.2912	1	3702	3702		23.016	5.1525	1	572100	+		14701	15247	8282	8282	18661	18661					0.08393956404847813
IKCDFPFIRLK	11	Unmodified	_IKCDFPFIRLK_					0	0	0		ENST00000244769.8_1_6:16328575-16486211:-|nuORF	ENST00000244769.8_1_6:16328575-16486211:-|nuORF	ENST00000244769.8_1_6:16328575-16486211:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.6005554199219	3	460.600447	1378.77951	-0.040391	-1.8604E-05	-1.1213	-0.00051647	-1.1617	-0.00053508	460.60046517531293	27.125	2.8179	27.104	26.45	29.268	-0.02141					310	94	6	0	0	0	0.35732	1	4560	4560		16.838	1.2999	1	6544400			14702	8897	8283	8283	18662	18662					0.10527430927277237
IKCDFPFIRLK	11	Unmodified	_IKCDFPFIRLK_					0	0	0		ENST00000244769.8_1_6:16328575-16486211:-|nuORF	ENST00000244769.8_1_6:16328575-16486211:-|nuORF	ENST00000244769.8_1_6:16328575-16486211:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.6007385253906	3	460.600447	1378.77951	0.14301	6.5872E-05	-1.2747	-0.00058711	-1.1316	-0.00052124	460.6004363307771	27.157	2.3135	27.145	26.541	28.854	-0.011562					240	81	6	0	0	0	0.37764	1	4509	4509		14.171	0.63579	1	6753000			14703	8897	8283	8283	18663	18663					0.10527430927277237
IKDLNENSR	9	Unmodified	_IKDLNENSR_					0	0	0			REV__nc|ENSG00000122068|Q96QD9-4|FYTTD1	REV__nc|ENSG00000122068|Q96QD9-4|FYTTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7886962890625	2	544.78837	1087.56219	0.39643	0.00021597	0.0064636	3.5213E-06	0.4029	0.00021949	544.7885254911457	16.844	0.78569	16.73	16.476	17.262	-0.11434					49	28	2	0	0	0	0.3208	1	1431	1431		5.7319	0.97584	1	142060	+		14704	15147	8284	8284	18664	18664					0.021907519782416784
IKDPVGLGGQ	10	Unmodified	_IKDPVGLGGQ_					0	0	0			REV__ENST00000595775.5_1_19:42817488-42818494:+|nuORF	REV__ENST00000595775.5_1_19:42817488-42818494:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2640686035156	2	492.279649	982.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.441	1	59.429	58.929	59.929	-0.011486								0	0	0	0.34897	1	14467	14467		15.248	0	1		+		14705	22596	8285	8285	18665	18665					0.052774564432638726
IKEHRVFF	8	Unmodified	_IKEHRVFF_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2952880859375	2	538.306001	1074.59745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.449	1	63.441	62.941	63.941	-0.0085526								0	0	0	0.35985	1	15703	15703		10.183	1.5901	1				14706	3536	8286	8286	18666	18666					0.06313459296711699
IKEIKEVSRI	10	Unmodified	_IKEIKEVSRI_					0	0	0			REV__nc|ENSG00000135775|Q14746-2|COG2	REV__nc|ENSG00000135775|Q14746-2|COG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.1853332519531	3	405.587084	1213.73942	0.37275	0.00015118	0.74025	0.00030023	1.113	0.00045142	405.58729435426693	36.363	0.33311	36.449	36.4	36.733	0.08625					16	11	2	0	0	0	0.32034	1	7421	7421		4.7159	0.83959	1	133930	+		14707	15763	8287	8287	18667	18667					0.14110207528369756
IKEIKEVSRI	10	Unmodified	_IKEIKEVSRI_					0	0	0			REV__nc|ENSG00000135775|Q14746-2|COG2	REV__nc|ENSG00000135775|Q14746-2|COG2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	405.587084	1213.73942	0.013752	5.5777E-06	0.98307	0.00039872	0.99682	0.0004043	405.5874509042219	36.429	0.42334	36.429	36.332	36.756	0	-0.010003	0.00021056	NaN	4.7159	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138140	+		14708	15763	8287	8287							0.14110207528369756
IKEMWAIVAR	10	Unmodified	_IKEMWAIVAR_					0	0	0			REV__ENSG00000121898|ENST00000241305|CPXM2	REV__ENSG00000121898|ENST00000241305|CPXM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8472900390625	2	608.847176	1215.6798	0.50749	0.00030899	-0.27175	-0.00016546	0.23574	0.00014353	608.8470185079906	84.018	2.8329	84.001	83.288	86.121	-0.016823					302	115	3	0	0	0	0.38773	1	22286	22286		5.7319	0.83484	1	2678900	+		14709	15135	8288	8288	18668	18668					0.08058613313323804
IKFFVKGC	8	Unmodified	_IKFFVKGC_					0	0	0			REV__nc|ENSG00000124496|Q96PN7-2|TRERF1	REV__nc|ENSG00000124496|Q96PN7-2|TRERF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.31060791015625	2	471.267499	940.520445	-0.19376	-9.1313E-05	-1.3412	-0.00063204	-1.5349	-0.00072336	471.26689011726063	14.078	0.23404	13.973	13.845	14.079	-0.10466					15	7	3	0	0	0	0.34353	1	641	641		4.756	1.8668	1	129010	+		14710	15237	8289	8289	18669	18669					0.04780524756017712
IKFFVKGC	8	Unmodified	_IKFFVKGC_					0	0	0			REV__nc|ENSG00000124496|Q96PN7-2|TRERF1	REV__nc|ENSG00000124496|Q96PN7-2|TRERF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	471.267499	940.520445	-0.24066	-0.00011342	-1.3312	-0.00062734	-1.5718	-0.00074076	471.26686111199166	13.975	0.18272	13.975	13.872	14.055	0	0.0056433	-4.5417E-06	NaN	4.756	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124940	+		14711	15237	8289	8289							0.04780524756017712
IKFIMSLKSF	10	Unmodified	_IKFIMSLKSF_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.239013671875	3	405.238627	1212.69405	0.029306	1.1876E-05	-0.99666	-0.00040389	-0.96736	-0.00039201	405.2385624516901	21.084	1.5948	21.084	20.594	22.189	0					186	56	6	0	0	0	0.38952	1	2942	2942		5.4027	0.68679	1	8354000			14712	6639	8290	8290	18670	18670					0.09621265741611751
IKFIMSLKSF	10	Unmodified	_IKFIMSLKSF_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.23858642578125	3	405.238627	1212.69405	0.033705	1.3658E-05	-0.97721	-0.000396	-0.9435	-0.00038234	405.23859081602035	21.15	1.9038	21.097	20.355	22.258	-0.052912					215	67	6	0	0	0	0.37823	1	2931	2931		7.4771	0	1	9841900			14713	6639	8290	8290	18671	18671					0.09621265741611751
IKFLNPPPKKL	11	Unmodified	_IKFLNPPPKKL_					0	0	0			REV__nc|ENSG00000162909|P17655-2|CAPN2	REV__nc|ENSG00000162909|P17655-2|CAPN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.2802429199219	3	432.279703	1293.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.574	1	49.607	49.107	50.107	0.032043								0	0	0	0.37452	1	11422	11422		2.8433	0.93691	1		+		14714	17021	8291	8291	18672	18672					0.1821226518441108
IKFLNPPPKKL	11	Unmodified	_IKFLNPPPKKL_					0	0	0			REV__nc|ENSG00000162909|P17655-2|CAPN2	REV__nc|ENSG00000162909|P17655-2|CAPN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.2801513671875	3	432.279703	1293.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.734	1	49.755	49.255	50.255	0.020691								0	0	0	0.37548	1	11471	11471		2.6312	1.6177	1		+		14715	17021	8291	8291	18673	18673					0.1821226518441108
IKFVEMKKKKY	11	Unmodified	_IKFVEMKKKKY_					0	0	0			REV__ENST00000550589.1_1_12:82746932-82748399:-|nuORF	REV__ENST00000550589.1_1_12:82746932-82748399:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.28265380859375	3	481.291502	1440.85268	0.01429	6.8779E-06	0.073752	3.5496E-05	0.088043	4.2374E-05	481.62582226109276	28.539	0.41911	28.539	28.31	28.729	0					21	14	2	0	0	0	0.45422	1	4993	4993		4.1166	1.2733	1	131940	+		14716	15635	8292	8292	18674	18674					0.14988559649918898
IKFVEMKKKKY	11	Unmodified	_IKFVEMKKKKY_					0	0	0			REV__ENST00000550589.1_1_12:82746932-82748399:-|nuORF	REV__ENST00000550589.1_1_12:82746932-82748399:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	481.291502	1440.85268	0.01429	6.8779E-06	0.073752	3.5496E-05	0.088043	4.2374E-05	481.62582226109276	28.539	0.41911	28.539	28.31	28.729	0	-0.026229	0.00016048	NaN	4.1166	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131940	+		14717	15635	8292	8292							0.14988559649918898
IKFVEMKKKKY	11	Unmodified	_IKFVEMKKKKY_					0	0	0			REV__ENST00000550589.1_1_12:82746932-82748399:-|nuORF	REV__ENST00000550589.1_1_12:82746932-82748399:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	481.291502	1440.85268	0.093801	4.5146E-05	-0.25896	-0.00012463	-0.16516	-7.9489E-05	481.2914083892703	28.57	0.33015	28.566	28.359	28.689	-0.0042572	0.0013668	-0.00031991	NaN	4.1166	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196130	+		14718	15635	8292	8292							0.14988559649918898
IKFVEMKKKKY	11	Unmodified	_IKFVEMKKKKY_					0	0	0			REV__ENST00000550589.1_1_12:82746932-82748399:-|nuORF	REV__ENST00000550589.1_1_12:82746932-82748399:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	481.291502	1440.85268	0.016383	7.8849E-06	0.098727	4.7516E-05	0.11511	5.5401E-05	481.6259287911918	28.589	0.423	28.59	28.322	28.745	0.0004673	0.024862	0.00019654	NaN	4.1166	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87283	+		14719	15635	8292	8292							0.14988559649918898
IKGFGGIGSAF	11	Unmodified	_IKGFGGIGSAF_					0	0	0		ENST00000424266.6_1_6:41040043-41040205:-|nuORF;ENST00000479950.5_1_6:41039388-41040205:-|nuORF;ENST00000486443.5_1_6:41038950-41040205:-|nuORF;ENST00000463088.5_1_6:41039005-41040205:-|nuORF	ENST00000424266.6_1_6:41040043-41040205:-|nuORF	ENST00000424266.6_1_6:41040043-41040205:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2718505859375	2	527.290017	1052.56548	0.46897	0.00024728	-0.084206	-4.4401E-05	0.38476	0.00020288	527.2902110797512	52.019	0.8652	52.07	51.846	52.711	0.050575					59	31	3	0	0	0	0.39802	1	12352	12352		11.495	0.67078	1	1212800			14720	10395	8293	8293	18675	18675					0.04130046822888289
IKHDPNYNYD	10	Unmodified	_IKHDPNYNYD_					0	0	0		nc|ENSG00000144712|O75155-2|CAND2;ENSG00000144712|ENST00000456430|CAND2	nc|ENSG00000144712|O75155-2|CAND2	nc|ENSG00000144712|O75155-2|CAND2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.26434326171875	3	426.863165	1277.56767	-0.0044276	-1.89E-06	-0.28255	-0.00012061	-0.28698	-0.0001225	426.86304771625635	17.317	0.67312	17.257	16.945	17.618	-0.060429					40	23	2	0	0	0	0.32168	1	1513	1513		0.56317	0	1	99153			14721	4605	8294	8294	18676	18676					-0.06001569229965753
IKHLQAAV	8	Unmodified	_IKHLQAAV_					0	0	0		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.2345886230469	2	440.27417	878.533787	-0.8416	-0.00037053	0.64609	0.00028446	-0.19551	-8.6078E-05	440.2743081692887	35.09	0.52493	35.167	34.893	35.418	0.077377					47	18	4	0	0	0	0.3366	1	6914	6914		18.135	3.5533	1	595360			14722	7574	8295	8295	18677	18677					0.08966098859605154
IKITTVIQHVF	11	Unmodified	_IKITTVIQHVF_					0	0	0		ENST00000510742.1_1_5:68503946-68505623:+|nuORF;ENSG00000153044|ENST00000283006|CENPH	ENST00000510742.1_1_5:68503946-68505623:+|nuORF	ENST00000510742.1_1_5:68503946-68505623:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.9302978515625	3	433.599212	1297.77581	0.015971	6.9249E-06	0.45092	0.00019552	0.4669	0.00020245	433.5993472640299	41.925	1.4628	42.022	41.716	43.179	0.096626					111	47	4	0	0	0	0.33277	1	9203	9203		3.0723	3.0723	1	731930			14723	5053	8296	8296	18678	18678					0.13883084425060588
IKKAQHKEK	9	Unmodified	_IKKAQHKEK_					0	0	0			REV__ENSG00000102313|ENST00000218436|ITIH6	REV__ENSG00000102313|ENST00000218436|ITIH6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.7779541015625	2	555.343115	1108.67168	0.12223	6.7879E-05	-0.15245	-8.4661E-05	-0.030221	-1.6783E-05	555.3431156119015	17.707	0.25834	17.59	17.467	17.726	-0.11739					13	8	2	0	0	0	0.25988	1	1734	1734		3.9444	0	1	45124	+		14724	14318	8297	8297	18679	18679					0.12168802388214317
IKKHVSFYR	9	Unmodified	_IKKHVSFYR_					0	0	0			REV__nc|ENSG00000171606|Q96GC6-4|ZNF274	REV__nc|ENSG00000171606|Q96GC6-4|ZNF274	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.342041015625	2	589.345658	1176.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.75	1	114.73	114.23	115.23	-0.019096								0	0	0	0.26734	1	29781	29781		0.45834	0	1		+		14725	17655	8298	8298	18680	18680					0.09549106250847217
IKLKGLYMLF	10	Unmodified	_IKLKGLYMLF_					0	0	0			REV__ENST00000505189.5_3_4:159133255-159133342:+|nuORF	REV__ENST00000505189.5_3_4:159133255-159133342:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.87542724609375	3	409.250756	1224.73044	-0.20466	-8.3757E-05	-0.47934	-0.00019617	-0.684	-0.00027993	409.25044991705903	26.216	0.40112	26.216	26.009	26.41	0					22	13	2	0	0	0	0.32122	1	4232	4232		0.77653	0	1	44321	+		14726	21734	8299	8299	18681	18681					0.12706142638330675
IKLQKQLW	8	Unmodified	_IKLQKQLW_					0	0	0			REV__ENST00000488174.5_1_X:70766398-70766500:+|nuORF	REV__ENST00000488174.5_1_X:70766398-70766500:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8298950195312	2	528.831852	1055.64915	0.14752	7.8014E-05	-3.2842	-0.0017368	-3.1367	-0.0016588	528.8302177284269	12.073	0.15968	12.073	12.011	12.171	0					12	8	2	0	0	0	0.45942	1	26	26		2.5775	0.27475	1	30019	+		14727	21572	8300	8300	18682	18682					0.12355202990602265
IKLQKQLW	8	Unmodified	_IKLQKQLW_					0	0	0			REV__ENST00000488174.5_1_X:70766398-70766500:+|nuORF	REV__ENST00000488174.5_1_X:70766398-70766500:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	528.831852	1055.64915	0.14752	7.8014E-05	-3.2842	-0.0017368	-3.1367	-0.0016588	528.8302177284269	12.073	0.15968	12.073	12.011	12.171	0	0.045236	0.00010081	NaN	2.5775	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30019	+		14728	21572	8300	8300							0.12355202990602265
IKLRYYKLL	9	Unmodified	_IKLRYYKLL_					0	0	0			REV__ENST00000371728.7_1_10:91477194-91477239:+|nuORF	REV__ENST00000371728.7_1_10:91477194-91477239:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.3905639648438	2	605.389534	1208.76451	0.58844	0.00035623	0.95088	0.00057566	1.5393	0.00093189	605.3900546418665	41.771	0.89936	41.862	41.754	42.653	0.090252					54	33	2	0	0	0	0.34681	1	9046	9046		1.8442	0.36234	1	1081100	+		14729	20402	8301	8301	18683	18683					0.16848307121586004
IKLRYYKLL	9	Unmodified	_IKLRYYKLL_					0	0	0			REV__ENST00000371728.7_1_10:91477194-91477239:+|nuORF	REV__ENST00000371728.7_1_10:91477194-91477239:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	605.389534	1208.76451	0.32561	0.00019712	1.418	0.00085842	1.7436	0.0010555	605.3902182307384	41.98	0.77365	41.98	41.851	42.624	0	0.10768	0.0002409	NaN	1.8442	35	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	526150	+		14730	20402	8301	8301							0.16848307121586004
IKLRYYKLL	9	Unmodified	_IKLRYYKLL_					0	0	0			REV__ENST00000371728.7_1_10:91477194-91477239:+|nuORF	REV__ENST00000371728.7_1_10:91477194-91477239:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	605.389534	1208.76451	0.58844	0.00035623	0.95088	0.00057566	1.5393	0.00093189	605.3900546418665	41.771	0.89936	41.862	41.754	42.653	0.090252	-0.010872	-0.00032463	NaN	1.8442	54	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1081100	+		14731	20402	8301	8301							0.16848307121586004
IKLRYYKLL	9	Unmodified	_IKLRYYKLL_					0	0	0			REV__ENST00000371728.7_1_10:91477194-91477239:+|nuORF	REV__ENST00000371728.7_1_10:91477194-91477239:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	605.389534	1208.76451	0.58681	0.00035525	1.1669	0.00070641	1.7537	0.0010617	605.8917232093181	41.679	1.1223	41.776	41.6	42.723	0.096626	-0.096805	-6.3132E-05	NaN	1.8442	59	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1573100	+		14732	20402	8301	8301							0.16848307121586004
IKLVSELGEQ	10	Unmodified	_IKLVSELGEQ_					0	0	0			REV__ENSG00000173801|ENST00000393931|JUP	REV__ENSG00000173801|ENST00000393931|JUP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2957153320312	2	558.318971	1114.62339	0.41892	0.00023389	1.3341	0.00074486	1.753	0.00097875	558.3197468427295	35.895	0.56397	35.895	35.604	36.168	0					35	20	2	0	0	0	0.31794	1	7305	7305		8.1555	1.0538	1	258740	+		14733	17803	8302	8302	18684	18684					0.0706626395767671
IKMWIFTYIK	10	Unmodified	_IKMWIFTYIK_					0	0	0		Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|25|2|sense	Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|25|2|sense	Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|25|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.7779235839844	3	448.25791	1341.7519	-0.092014	-4.1246E-05	-1.156	-0.00051817	-1.248	-0.00055941	448.25736280553036	28.277	0.48832	28.277	28.008	28.496	0					34	16	3	0	0	0	0.31497	1	4929	4929		14.218	2.5868	1	198210			14734	12354	8303	8303	18685	18685					0.09469527667056354
IKMWIFTYIK	10	Unmodified	_IKMWIFTYIK_					0	0	0		Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|25|2|sense	Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|25|2|sense	Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|25|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.7778625488281	3	448.25791	1341.7519	-0.085652	-3.8394E-05	-0.7627	-0.00034189	-0.84835	-0.00038028	448.2575279389779	28.297	0.52686	28.297	28.023	28.55	0.00046921					33	18	2	0	0	0	0.31867	1	4903	4903		7.9454	3.8288	1	189730			14735	12354	8303	8303	18686	18686					0.09469527667056354
IKPEDYACGG	10	Unmodified	_IKPEDYACGG_					0	0	0		ENSG00000072858|ENST00000264852|SIDT1;nc|ENSG00000072858|Q9NXL6-2|SIDT1	ENSG00000072858|ENST00000264852|SIDT1	ENSG00000072858|ENST00000264852|SIDT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3162841796875	2	526.739499	1051.46445	0.23608	0.00012435	-3.6341	-0.0019142	-3.3981	-0.0017899	526.7379065710509	15.279	0.27488	15.169	15.01	15.285	-0.10981					15	9	2	0	0	0	0.32011	1	969	969		4.5289	1.2476	1	19695			14736	992	8304	8304	18687	18687					-0.059227729421081676
IKPQLESQEIK	11	Unmodified	_IKPQLESQEIK_					0	0	0			REV__ENST00000320027.9_1_13:31729697-31735637:-|nuORF	REV__ENST00000320027.9_1_13:31729697-31735637:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.9331970214844	3	438.253882	1311.73982	-0.23085	-0.00010117	-1.5214	-0.00066674	-1.7522	-0.00076791	438.2533776323074	27.573	0.37109	27.551	27.349	27.72	-0.02141					23	12	3	0	0	0	0.44351	1	4743	4743		5.5233	0.12058	1	111560	+		14737	19960	8305	8305	18688	18688					0.09641582457561526
IKPREMAIT	9	Unmodified	_IKPREMAIT_					0	0	0			REV__ENSG00000006283|ENST00000359106|CACNA1G	REV__ENSG00000006283|ENST00000359106|CACNA1G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.804931640625	2	529.804977	1057.5954	0.76161	0.00040351	-0.60273	-0.00031933	0.15888	8.4178E-05	529.8046422638259	48.347	0.72506	48.395	48.101	48.826	0.04752					63	26	3	0	0	0	0.07432	1	11111	11111		43.858	7.7313	1	823850	+		14738	13357	8306	8306	18689	18689					0.06890662496562072
IKPRQRTLA	9	Unmodified	_IKPRQRTLA_					0	0	0		ENSG00000088808|ENST00000202556|PPP1R13B;ENST00000555391.5_1_14:104201493-104210315:-|nuORF;ENST00000555825.5_1_14:104201493-104202681:-|nuORF;ENST00000556334.5_1_14:104201493-104205387:-|nuORF	ENSG00000088808|ENST00000202556|PPP1R13B	ENSG00000088808|ENST00000202556|PPP1R13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.8433227539062	2	541.843282	1081.67201	0.1332	7.2176E-05	0.037608	2.0377E-05	0.17081	9.2553E-05	541.8432864165859	12.794	0.3562	12.727	12.58	12.936	-0.067496					21	11	3	0	0	0	0.31417	1	245	245		6.7232	0	1	80884			14739	1329	8307	8307	18690	18690					0.13444222108091708
IKPRRRLT	8	Unmodified	_IKPRRRLT_					0	0	0			REV__ENSG00000116668|ENST00000367500|SWT1	REV__ENSG00000116668|ENST00000367500|SWT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7946166992188	2	520.345992	1038.67743	0.25021	0.00013019	1.2836	0.00066794	1.5338	0.00079813	520.8484940293723	76.091	0.085136	76.145	76.076	76.161	0.053413					4	2	2	0	0	0	0.34353	1	19561	19561		2.0598	0.40713	1	36331	+		14740	14928	8308	8308	18691	18691					0.15963945690555192
IKQEKLGTV	9	Unmodified	_IKQEKLGTV_					0	0	0		nc|ENSG00000113580|P04150-7|NR3C1;nc|ENSG00000113580|P04150-5|NR3C1;nc|ENSG00000113580|P04150-13|NR3C1;nc|ENSG00000113580|P04150-12|NR3C1;nc|ENSG00000113580|P04150-11|NR3C1;nc|ENSG00000113580|P04150-9|NR3C1;nc|ENSG00000113580|P04150-2|NR3C1;nc|ENSG00000113580|P04150-6|NR3C1;nc|ENSG00000113580|P04150-8|NR3C1;nc|ENSG00000113580|P04150-10|NR3C1;ENSG00000113580|ENST00000394464|NR3C1;nc|ENSG00000113580|P04150-3|NR3C1	nc|ENSG00000113580|P04150-7|NR3C1	nc|ENSG00000113580|P04150-7|NR3C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8026428222656	2	508.310949	1014.60735	-0.027966	-1.4215E-05	0.11282	5.7347E-05	0.084854	4.3132E-05	508.31090181923724	28.336	0.58175	28.336	28.104	28.686	0.0004673					30	20	3	0	0	0	0.22596	1	4867	4867		6.7232	0	1	166830			14741	2513	8309	8309	18692	18692					0.10062602511425212
IKQEKLGTV	9	Unmodified	_IKQEKLGTV_					0	0	0		nc|ENSG00000113580|P04150-7|NR3C1;nc|ENSG00000113580|P04150-5|NR3C1;nc|ENSG00000113580|P04150-13|NR3C1;nc|ENSG00000113580|P04150-12|NR3C1;nc|ENSG00000113580|P04150-11|NR3C1;nc|ENSG00000113580|P04150-9|NR3C1;nc|ENSG00000113580|P04150-2|NR3C1;nc|ENSG00000113580|P04150-6|NR3C1;nc|ENSG00000113580|P04150-8|NR3C1;nc|ENSG00000113580|P04150-10|NR3C1;ENSG00000113580|ENST00000394464|NR3C1;nc|ENSG00000113580|P04150-3|NR3C1	nc|ENSG00000113580|P04150-7|NR3C1	nc|ENSG00000113580|P04150-7|NR3C1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	508.310949	1014.60735	0.072752	3.6981E-05	0.60426	0.00030715	0.67701	0.00034413	508.31118577142837	28.372	0.32818	28.367	28.167	28.495	-0.0042572	0.01519	0.00032543	NaN	6.7232	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175390			14742	2513	8309	8309							0.10062602511425212
IKQELHARRLS	11	Unmodified	_IKQELHARRLS_					0	0	0			REV__ENSG00000135090|ENST00000392533|TAOK3	REV__ENSG00000135090|ENST00000392533|TAOK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.57037353515625	3	450.936999	1349.78917	-0.11102	-5.0062E-05	-0.45529	-0.00020531	-0.56631	-0.00025537	450.9367313515311	31.294	0.51904	31.336	31.024	31.543	0.042364					46	18	3	0	0	0	0.33169	1	5818	5818		6.2344	0	1	703250	+		14743	15720	8310	8310	18693	18693					0.12826335257022947
IKQSKVVLL	9	Unmodified	_IKQSKVVLL_					0	0	0		ENST00000470203.1_1_20:3171462-3175942:-|nuORF;nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	ENST00000470203.1_1_20:3171462-3175942:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8092041015625	2	514.347335	1026.68012	0.25692	0.00013215	0.29383	0.00015113	0.55075	0.00028328	514.3472348018748	44.316	0.22427	44.391	44.307	44.531	0.07505					13	7	2	0	0	0	0.26031	1	9840	9840		3.5965	0	1	76939			14744	8045	8311	8311	18694	18694					0.16784356304856374
IKRATFSYVF	10	Unmodified	_IKRATFSYVF_					0	0	0		ENST00000366663.9_1_1:230975176-230975578:-|nuORF	ENST00000366663.9_1_1:230975176-230975578:-|nuORF	ENST00000366663.9_1_1:230975176-230975578:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.216796875	3	411.232641	1230.67609	0.078439	3.2257E-05	-0.29381	-0.00012083	-0.21537	-8.8568E-05	411.23245962733915	46.559	1.0082	46.613	46.326	47.334	0.054371					85	35	4	0	0	0	0.31358	1	10487	10487		12.175	5.5513	1	2323900			14745	9709	8312	8312	18695	18695					0.06998266811115172
IKRLFYTLDL	10	Unmodified	_IKRLFYTLDL_					0	0	0			REV__ENST00000282999.7_1_5:112200154-112203077:+|nuORF	REV__ENST00000282999.7_1_5:112200154-112203077:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3857421875	2	641.381906	1280.74926	0.47875	0.00030706	0.0022317	1.4314E-06	0.48099	0.0003085	641.8823360423124	97.889	0.66091	97.882	97.366	98.027	-0.0068283					155	72	3	0	0	0	0.40992	1	26212	26212		1.6526	0	1	297020	+		14746	19721	8313	8313	18696	18696					0.12011395533750147
IKRRSRPWF	9	Unmodified	_IKRRSRPWF_					0	0	0			REV__ENST00000558084.5_1_7:151927011-151927098:-|nuORF	REV__ENST00000558084.5_1_7:151927011-151927098:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.73406982421875	3	415.915758	1244.72544	-0.51771	-0.00021532	2.9674	0.0012342	2.4497	0.0010189	415.9171413695635	35.361	1.7009	35.361	34.556	36.256	0					136	61	4	0	0	0	0.25441	1	6986	6986		10.151	2.6735	1	699350	+		14747	22276	8314	8314	18697	18697					0.11287019610585958
IKRVSCLAPPR	11	Unmodified	_IKRVSCLAPPR_					0	0	0			REV__ENST00000591299.1_2_22:17082945-17094937:+|nuORF	REV__ENST00000591299.1_2_22:17082945-17094937:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3699951171875	2	620.371349	1238.72815	-0.10965	-6.8026E-05	-1.7492	-0.0010851	-1.8588	-0.0011532	620.3698980214791	111.73	0.041298	111.71	111.69	111.73	-0.015625					5	4	2	0	0	0	0.46655	1	29068	29068		2.4985	0	1	68760	+		14748	22563	8315	8315	18698	18698					0.11833106953213246
IKSEKGPV	8	Unmodified	_IKSEKGPV_					0	0	0			REV__nc|ENSG00000101639|Q8TEP8-2|CEP192	REV__nc|ENSG00000101639|Q8TEP8-2|CEP192	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.92572021484375	2	429.258185	856.501818	-0.042987	-1.8453E-05	-0.49519	-0.00021257	-0.53818	-0.00023102	429.25786116555906	24.499	0.4043	24.427	24.207	24.612	-0.072559					21	13	2	0	0	0	0.33993	1	3826	3826		16.942	1.0951	1	80509	+		14749	14281	8316	8316	18699	18699					0.06782686385804482
IKSKLDSS	8	Unmodified	_IKSKLDSS_					0	0	0			REV__ENSG00000187815|ENST00000372706|ZFP69	REV__ENSG00000187815|ENST00000372706|ZFP69	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.25274658203125	2	439.2531	876.491647	0.09915	4.3552E-05	-1.5337	-0.00067369	-1.4346	-0.00063014	439.2522541002184	80.59	0.85472	80.563	80.233	81.088	-0.026825					49	32	2	0	0	0	0.44389	1	20985	20985		7.9102	2.6795	1	781730	+		14750	18523	8317	8317	18700	18700					0.04846078660580133
IKSKLDSS	8	Unmodified	_IKSKLDSS_					0	0	0			REV__ENSG00000187815|ENST00000372706|ZFP69	REV__ENSG00000187815|ENST00000372706|ZFP69	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	439.2531	876.491647	0.052723	2.3159E-05	-1.4122	-0.00062033	-1.3595	-0.00059717	439.2523508396849	80.524	0.91114	80.524	80.267	81.178	0	-0.021776	-0.0001598	NaN	7.9102	64	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	749440	+		14751	18523	8317	8317							0.04846078660580133
IKSKLDSS	8	Unmodified	_IKSKLDSS_					0	0	0			REV__ENSG00000187815|ENST00000372706|ZFP69	REV__ENSG00000187815|ENST00000372706|ZFP69	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	439.2531	876.491647	-0.061094	-2.6836E-05	-0.86729	-0.00038096	-0.92838	-0.0004078	439.2525531477671	80.485	0.89249	80.55	80.241	81.133	0.065094	0.0044268	0.00031894	NaN	7.9102	66	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	577220	+		14752	18523	8317	8317							0.04846078660580133
IKSKQKQERFF	11	Unmodified	_IKSKQKQERFF_					0	0	0			REV__ENST00000370872.7_1_1:75171763-75171883:-|nuORF	REV__ENST00000370872.7_1_1:75171763-75171883:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.27740478515625	3	480.277021	1437.80923	0.36436	0.00017499	0.20084	9.6458E-05	0.5652	0.00027145	480.2772686648052	47.493	0.70605	47.54	47.187	47.893	0.04752					55	25	3	0	0	0	0.32466	1	10796	10796		19.144	10.7	1	895410	+		14753	20392	8318	8318	18701	18701					0.10784086196963472
IKSKQKQERFF	11	Unmodified	_IKSKQKQERFF_					0	0	0			REV__ENST00000370872.7_1_1:75171763-75171883:-|nuORF	REV__ENST00000370872.7_1_1:75171763-75171883:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2777404785156	3	480.277021	1437.80923	0.69855	0.0003355	0.089734	4.3097E-05	0.78828	0.00037859	480.2772625814088	47.51	0.47233	47.554	47.298	47.771	0.04332					41	17	3	0	0	0	0.3287	1	10810	10810		12.228	3.7833	1	874540	+		14754	20392	8318	8318	18702	18702					0.10784086196963472
IKSPSLRIP	9	Unmodified	_IKSPSLRIP_					0	0	0			REV__ENSG00000182095|ENST00000430969|TNRC18	REV__ENSG00000182095|ENST00000430969|TNRC18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.811279296875	2	505.821484	1009.62842	0.45286	0.00022907	0.15866	8.0254E-05	0.61152	0.00030932	505.82138361891043	36.196	1.0176	36.278	35.874	36.891	0.082355					93	36	3	0	0	0	0.2869	1	7426	7426		10.8	0.72558	1	2160600	+		14755	18177	8319	8319	18703	18703					0.1239861261092301
IKTHMLKIQSV	11	Unmodified	_IKTHMLKIQSV_					0	0	0			REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.3885498046875	2	649.386665	1296.75878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.418	1	95.418	94.918	95.918	0								0	0	0	0.37609	1	25470	25470		2.4985	0	1		+		14756	15910	8320	8320	18704	18704					0.12226840547600659
IKVDKGFKQR	10	Unmodified	_IKVDKGFKQR_					0	0	0			REV__ENSG00000116005|ENST00000433351|PCYOX1	REV__ENSG00000116005|ENST00000433351|PCYOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.8696899414062	2	609.869497	1217.72444	0.90391	0.00055127	-0.11654	-7.1076E-05	0.78737	0.00048019	609.8693341912756	33.854	0.72403	33.92	33.65	34.374	0.06636					59	25	3	0	0	0	0.36368	1	6703	6703		10.151	0.6066	1	663720	+		14757	14907	8321	8321	18705	18705					0.1242876045103003
IKVSCQHLS	9	Unmodified	_IKVSCQHLS_					0	0	0			REV__LRRC8C|p.D786Vfs*18|1|0.03|ENSG00000171488|chr1:89714926-89714927|-/TAGAGTTC|frameshift_variant	REV__LRRC8C|p.D786Vfs*18|1|0.03|ENSG00000171488|chr1:89714926-89714927|-/TAGAGTTC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7595520019531	2	507.773677	1013.5328	0.26885	0.00013651	-0.47004	-0.00023867	-0.20119	-0.00010216	507.77325311060815	24.172	1.0018	24.099	23.791	24.793	-0.072559					70	33	3	0	0	0	0.28674	1	3733	3733		10.824	0	1	239590	+		14758	17640	8322	8322	18706	18706					0.02657516428382678
IKVWDLRK	8	Unmodified	_IKVWDLRK_					0	0	0		ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3214111328125	2	529.329476	1056.6444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.284	1	28.28	27.78	28.78	-0.0042572								0	0	0	0.29147	1	4916	4916		30.225	4.8255	1				14759	4519	8323	8323	18707	18707					0.11834318847832037
IKWKHRRKN	9	Unmodified	_IKWKHRRKN_					0	0	0		ENST00000551685.2_1_12:43963803-43964301:-|nuORF	ENST00000551685.2_1_12:43963803-43964301:-|nuORF	ENST00000551685.2_1_12:43963803-43964301:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.9293212890625	3	422.594907	1264.76289	-0.45021	-0.00019026	-0.030267	-1.279E-05	-0.48048	-0.00020305	422.59473391182246	104.61	0.72551	104.61	104.3	105.02	0					231	101	3	0	0	0	0.26238	1	27749	27749		1.0715	0	1	408270			14760	11805	8324	8324	18708	18708					0.14110110876208637
IKYPENFFLL	10	Unmodified	_IKYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.3558959960938	2	642.355357	1282.69616	0.66982	0.00043026	-0.27863	-0.00017898	0.39119	0.00025128	642.3551193741985	78.739	0.6647	78.739	78.438	79.103	0					45	26	2	0	0	0	0.048379	2	20407	20407;20472		59.368	33.969	1	241550			14761	6643;7608;8358	8325	8325	18709;18710	18709					0.06612017751081112
IKYPENFFLL	10	Unmodified	_IKYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.8572998046875	2	642.355357	1282.69616	0.67794	0.00043548	1.8646	0.0011977	2.5425	0.0016332	643.361850341912	78.691	1.2805	78.749	78.03	79.311	0.058151					99	51	3	0	0	0	0.084702	2	20373	20373;20424		51.415	27.625	1	370770			14762	6643;7608;8358	8325	8325	18711;18712	18711					0.06612017751081112
IKYPENFFLL	10	Unmodified	_IKYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.857177734375	2	642.355357	1282.69616	0.82473	0.00052977	1.2706	0.00081618	2.0953	0.001346	642.354705867261	78.8	1.325	78.769	77.926	79.251	-0.030434					112	52	3	0	0	0	0.048379	2	20400	20400;20444		59.368	29.528	1	385000			14763	6643;7608;8358	8325	8325	18713;18714	18713					0.06612017751081112
ILAGGLLTL	9	Unmodified	_ILAGGLLTL_					0	0	0			REV__nc|ENSG00000171121|Q9NPA1-4|KCNMB3	REV__nc|ENSG00000171121|Q9NPA1-4|KCNMB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.7501525878906	2	435.786579	869.558604	0.19412	8.4596E-05	-0.10401	-4.5326E-05	0.090113	3.927E-05	435.7864426985192	53.957	0.64817	53.957	53.674	54.322	0					56	23	3	0	0	0	0.031932	1	12800	12800		63.563	0	1	852080	+		14764	17623	8326	8326	18715	18715					0.11860733942330626
ILAGGLLTL	9	Unmodified	_ILAGGLLTL_					0	0	0			REV__nc|ENSG00000171121|Q9NPA1-4|KCNMB3	REV__nc|ENSG00000171121|Q9NPA1-4|KCNMB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.7501220703125	2	435.786579	869.558604	0.026215	1.1424E-05	0.017199	7.4951E-06	0.043414	1.8919E-05	435.78650892512513	53.905	0.73837	53.962	53.664	54.403	0.056255					63	27	3	0	0	0	0.031932	1	12775	12775		63.563	0	1	901160	+		14765	17623	8326	8326	18716	18716					0.11860733942330626
ILAHGKLR	8	Unmodified	_ILAHGKLR_					0	0	0		ENST00000547851.1_1_12:47600278-47609950:-|nuORF;ENST00000550426.5_1_12:47599871-47609950:-|nuORF	ENST00000547851.1_1_12:47600278-47609950:-|nuORF	ENST00000547851.1_1_12:47600278-47609950:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2955322265625	2	454.295436	906.57632	0.25183	0.00011441	-1.5645	-0.00071076	-1.3127	-0.00059636	454.29534378202345	52.964	2.7439	52.964	52.63	55.374	0					251	101	4	0	0	0	0.33916	2	12428	12428;12467		26.341	0	1	7242100			14766	11773	8327	8327	18717;18718	18717					0.11929493987838669
ILAHGKLR	8	Unmodified	_ILAHGKLR_					0	0	0		ENST00000547851.1_1_12:47600278-47609950:-|nuORF;ENST00000550426.5_1_12:47599871-47609950:-|nuORF	ENST00000547851.1_1_12:47600278-47609950:-|nuORF	ENST00000547851.1_1_12:47600278-47609950:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.29559326171875	2	454.295436	906.57632	0.38717	0.00017589	-1.6719	-0.00075955	-1.2848	-0.00058366	454.2952786152763	52.879	3.1282	52.93	52.603	55.731	0.050575					232	116	3	0	0	0	0.33916	2	12418	12418;12506		26.341	0	1	7766000			14767	11773	8327	8327	18719;18720	18719					0.11929493987838669
ILAHGKLR	8	Unmodified	_ILAHGKLR_					0	0	0		ENST00000547851.1_1_12:47600278-47609950:-|nuORF;ENST00000550426.5_1_12:47599871-47609950:-|nuORF	ENST00000547851.1_1_12:47600278-47609950:-|nuORF	ENST00000547851.1_1_12:47600278-47609950:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.29547119140625	2	454.295436	906.57632	0.23328	0.00010598	-1.6837	-0.00076491	-1.4504	-0.00065893	454.2953576360948	53.168	2.6396	53.158	52.631	55.27	-0.0096054					237	97	4	0	0	0	0.39956	1	12480	12480		19.439	0	1	6955500			14768	11773	8327	8327	18721	18721					0.11929493987838669
ILAIAILIRKR	11	Unmodified	_ILAIAILIRKR_					0	0	0			REV__nc|ENSG00000129353|Q8IWA5-3|SLC44A2	REV__nc|ENSG00000129353|Q8IWA5-3|SLC44A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.3027648925781	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.482	1	41.573	41.073	42.073	0.090252								0	0	0	0.38223	1	8946	8946		0.08335	0	1		+		14769	15413	8328	8328	18722	18722					0.25807349203978447
ILAILTTSF	9	Unmodified	_ILAILTTSF_					0	0	0		nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.3369140625	2	489.797143	977.579734	0.14623	7.1625E-05	1.9844	0.00097194	2.1306	0.0010436	489.7972056844957	75.474	0.74893	75.474	75.128	75.877	0					36	26	2	0	0	0	0.24542	1	19332	19332		9.3474	0	1	83712			14770	4286	8329	8329	18723	18723					0.09004699251170223
ILAIPERKE	9	Unmodified	_ILAIPERKE_					0	0	0			REV__nc|ENSG00000101639|Q8TEP8-2|CEP192	REV__nc|ENSG00000101639|Q8TEP8-2|CEP192	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2939453125	2	534.824224	1067.63389	0.64892	0.00034706	-0.17736	-9.4856E-05	0.47156	0.0002522	534.8241102340265	53.522	0.5479	53.522	53.286	53.834	0					34	20	2	0	0	0	0.23783	1	12741	12741		18.135	4.2289	1	554180	+		14771	14281	8330	8330	18724	18724					0.10278291402732975
ILAKKVYTLYS	11	Unmodified	_ILAKKVYTLYS_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;ENST00000574518.1_1_17:7674005-7689702:+|nuORF	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8917846679688	2	649.889564	1297.76457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.98	1	119.96	119.46	120.46	-0.024361								0	0	0	0.38114	1	30957	30957		1.3295	0.87119	1				14772	7418	8331	8331	18725	18725					0.12760262330948535
ILALAPRLL	9	Unmodified	_ILALAPRLL_					0	0	0		ENST00000482974.1_1_3:50614485-50617422:+|nuORF;ENST00000448997.5_1_3:50608680-50617422:+|nuORF;ENSG00000114735|ENST00000232854|HEMK1	ENST00000482974.1_1_3:50614485-50617422:+|nuORF	ENST00000482974.1_1_3:50614485-50617422:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.79443359375	2	490.33677	978.658987	0.058	2.8439E-05	0.33364	0.00016359	0.39163	0.00019203	490.3368915814053	81.054	0.72712	81.119	80.776	81.503	0.065102					46	35	2	0	0	0	0.25526	1	21119	21119		7.9102	0	1	92894			14773	2579	8332	8332	18726	18726					0.16880390995981998
ILALLNDLLKL	11	Unmodified	_ILALLNDLLKL_					0	0	0			REV__ENSG00000124571|ENST00000265351|XPO5	REV__ENSG00000124571|ENST00000265351|XPO5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8201904296875	2	619.907756	1237.80096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.306	1	12.21	11.71	12.71	-0.096607								0	0	0	0.38126	1	89	89		1.1933	0	1		+		14774	15241	8333	8333	18727	18727					0.1915713922762734
ILALTRSLE	9	Unmodified	_ILALTRSLE_					0	0	0			REV__ENST00000253401.10_1_X:62974200-62974368:-|nuORF	REV__ENST00000253401.10_1_X:62974200-62974368:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.78033447265625	2	508.310949	1014.60735	0.36718	0.00018664	-0.66608	-0.00033858	-0.2989	-0.00015193	508.3119446250046	71.893	0.1096	71.95	71.896	72.005	0.056572					5	3	2	0	0	0	0.25879	1	18302	18302		4.756	0	1	44232	+		14775	19538	8334	8334	18728	18728					0.10062602511425212
ILASPLPKI	9	Unmodified	_ILASPLPKI_					0	0	0			REV__ENST00000490912.5_1_7:26240494-26240701:-|nuORF	REV__ENST00000490912.5_1_7:26240494-26240701:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7528076171875	2	476.315503	950.616454	-0.063937	-3.0454E-05	-0.017779	-8.4684E-06	-0.081716	-3.8923E-05	476.315496733946	59.641	0.72219	59.736	59.354	60.077	0.095089					40	25	2	0	0	0	0.24688	1	14499	14499		14.838	10.082	1	371980	+		14776	21606	8335	8335	18729	18729					0.13916995867737114
ILASPLPKI	9	Unmodified	_ILASPLPKI_					0	0	0			REV__ENST00000490912.5_1_7:26240494-26240701:-|nuORF	REV__ENST00000490912.5_1_7:26240494-26240701:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7528991699219	2	476.315503	950.616454	0.26551	0.00012647	-0.23221	-0.0001106	0.033306	1.5864E-05	476.31531818241683	59.748	0.62466	59.737	59.372	59.997	-0.011486					35	21	2	0	0	0	0.24688	1	14519	14519		14.838	6.245	1	455460	+		14777	21606	8335	8335	18730	18730					0.13916995867737114
ILAVDFPLFP	10	Unmodified	_ILAVDFPLFP_					0	0	0		ENSG00000277161|ENST00000614443|PIGW	ENSG00000277161|ENST00000614443|PIGW	ENSG00000277161|ENST00000614443|PIGW	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.3251953125	2	566.326068	1130.63758	-0.11547	-6.5393E-05	-1.1763	-0.00066615	-1.2917	-0.00073154	566.3256411425983	27.77	0.96424	27.758	27.239	28.203	-0.01156					63	33	3	0	0	0	0.20278	1	4755	4755		32.305	10.559	1	213690			14778	8731	8336	8336	18731	18731					0.07748961176594094
ILAVHIEAP	9	Unmodified	_ILAVHIEAP_					0	0	0			REV__nc|ENSG00000160145|O60229-2|KALRN	REV__nc|ENSG00000160145|O60229-2|KALRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.27178955078125	2	481.78711	961.559667	0.24274	0.00011695	0.13657	6.5799E-05	0.37932	0.00018275	481.7873971348951	43.804	0.47171	43.881	43.684	44.155	0.077515					26	17	2	0	0	0	0.23147	1	9592	9592		13.508	0	1	211330	+		14779	16880	8337	8337	18732	18732					0.07734948311224343
ILAVHIEAP	9	Unmodified	_ILAVHIEAP_					0	0	0			REV__nc|ENSG00000160145|O60229-2|KALRN	REV__nc|ENSG00000160145|O60229-2|KALRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.271728515625	2	481.78711	961.559667	0.30544	0.00014716	-0.56582	-0.00027261	-0.26038	-0.00012545	481.78720070050997	43.803	0.41734	43.887	43.631	44.049	0.083996					21	15	2	0	0	0	0.23147	1	9573	9573		19.439	3.6708	1	297220	+		14780	16880	8337	8337	18733	18733					0.07734948311224343
ILAVHIEAP	9	Unmodified	_ILAVHIEAP_					0	0	0			REV__nc|ENSG00000160145|O60229-2|KALRN	REV__nc|ENSG00000160145|O60229-2|KALRN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	481.78711	961.559667	0.13177	6.3484E-05	-0.39996	-0.0001927	-0.2682	-0.00012921	481.78727644883236	44.016	0.41243	44.016	43.793	44.206	0	0.087485	-0.00025278	NaN	4.756	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214420	+		14781	16880	8337	8337							0.07734948311224343
ILCIPANPK	9	Unmodified	_ILCIPANPK_					0	0	0			REV__TTC17|p.W619C|1|0.34|ENSG00000052841|chr11:43407370-43407370|G/C|missense_variant	REV__TTC17|p.W619C|1|0.34|ENSG00000052841|chr11:43407370-43407370|G/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7882995605469	2	484.783513	967.552473	0.52356	0.00025381	3.9883	0.0019335	4.5119	0.0021873	484.7880193184683	36.025	0.92458	36.111	35.73	36.654	0.086246					131	32	6	0	0	0	0.28128	1	7215	7215		11.64	1.4569	1	3060400	+		14782	23346	8338	8338	18734	18734					0.06739892439145478
ILDRFILK	8	Unmodified	_ILDRFILK_					0	0	0		ENSG00000107187|ENST00000371748|LHX3;nc|ENSG00000107187|Q9UBR4-2|LHX3	ENSG00000107187|ENST00000371748|LHX3	ENSG00000107187|ENST00000371748|LHX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3389587402344	2	509.326402	1016.63825	0.31991	0.00016294	-1.2547	-0.00063908	-0.93484	-0.00047614	509.3254798606982	68.002	0.31534	68.002	67.809	68.124	0					18	10	2	0	0	0	0.3474	2	17118	17076;17118		25.399	4.8044	1	125570			14783	2116	8339	8339	18735;18736	18736					0.1305980061632681
ILDRFILK	8	Unmodified	_ILDRFILK_					0	0	0		ENSG00000107187|ENST00000371748|LHX3;nc|ENSG00000107187|Q9UBR4-2|LHX3	ENSG00000107187|ENST00000371748|LHX3	ENSG00000107187|ENST00000371748|LHX3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3388366699219	2	509.326402	1016.63825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.939	1	68.017	67.517	68.517	0.078041								0	0	0	0.3229	1	17080	17080		25.399	2.2509	1				14784	2116	8339	8339	18737	18737					0.1305980061632681
ILDRFILK	8	Unmodified	_ILDRFILK_					0	0	0		ENSG00000107187|ENST00000371748|LHX3;nc|ENSG00000107187|Q9UBR4-2|LHX3	ENSG00000107187|ENST00000371748|LHX3	ENSG00000107187|ENST00000371748|LHX3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3390808105469	2	509.326402	1016.63825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.099	1	68.177	67.677	68.677	0.078041								0	0	0	0.34492	1	17130	17130		16.942	3.0362	1				14785	2116	8339	8339	18738	18738					0.1305980061632681
ILDRFILK	8	Unmodified	_ILDRFILK_					0	0	0		ENSG00000107187|ENST00000371748|LHX3;nc|ENSG00000107187|Q9UBR4-2|LHX3	ENSG00000107187|ENST00000371748|LHX3	ENSG00000107187|ENST00000371748|LHX3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3389892578125	2	509.326402	1016.63825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.958	1	67.941	67.441	68.441	-0.016296								0	0	0	0.33432	1	17081	17081		21.747	3.6117	1				14786	2116	8339	8339	18739	18739					0.1305980061632681
ILEAHRLF	8	Unmodified	_ILEAHRLF_					0	0	0			REV__ENST00000483549.5_1_22:46114317-46136469:+|nuORF	REV__ENST00000483549.5_1_22:46114317-46136469:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7928466796875	2	499.792727	997.5709	0.54866	0.00027421	-0.16381	-8.1869E-05	0.38485	0.00019235	499.792630169108	55.185	0.46077	55.166	54.947	55.408	-0.019077					28	16	2	0	0	0	0.2157	1	13186	13186		40.449	2.2974	1	712540	+		14787	15468	8340	8340	18740	18740					0.07201770405356456
ILEDDSCI	8	Unmodified	_ILEDDSCI_					0	0	0			REV__nc|ENSG00000120910|P48454-2|PPP3CC	REV__nc|ENSG00000120910|P48454-2|PPP3CC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.739990234375	2	454.207501	906.400449	0.3978	0.00018068	1.3239	0.00060131	1.7217	0.000782	454.2078907322307	64.197	0.53862	64.197	63.915	64.454	0					34	19	2	0	0	0	0.34147	1	15895	15895		2.8892	0	1	268700	+		14788	15101	8341	8341	18741	18741					-0.056495530990673615
ILEKVIDI	8	Unmodified	_ILEKVIDI_					0	0	0			REV__ENSG00000169018|ENST00000306917|FEM1B	REV__ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.7969665527344	2	471.797143	941.579734	0.54072	0.00025511	-0.51765	-0.00024422	0.023074	1.0886E-05	471.79685263997357	78.058	0.59319	78.058	77.822	78.415	0					37	21	2	0	0	0	0.20663	2	20172	20131;20172		41.84	3.8716	1	309590	+		14789	17494	8342	8342	18742;18743	18743					0.10660699251184269
ILEKVIDI	8	Unmodified	_ILEKVIDI_					0	0	0			REV__ENSG00000169018|ENST00000306917|FEM1B	REV__ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7866516113281	2	471.797143	941.579734	0.51222	0.00024167	-0.40325	-0.00019025	0.10897	5.1413E-05	471.79686679299664	77.985	0.57082	78.043	77.819	78.39	0.058151					31	20	2	0	0	0	0.33441	1	20101	20101		26.884	5.137	1	313560	+		14790	17494	8342	8342	18744	18744					0.10660699251184269
ILEKVIDI	8	Unmodified	_ILEKVIDI_					0	0	0			REV__ENSG00000169018|ENST00000306917|FEM1B	REV__ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.797119140625	2	471.797143	941.579734	0.77292	0.00036466	-0.61603	-0.00029064	0.15689	7.4021E-05	471.796743788764	78.082	0.54188	78.051	77.759	78.301	-0.030434					43	19	3	0	0	0	0.20663	2	20183	20163;20183		41.84	2.0962	1	280670	+		14791	17494	8342	8342	18745;18746	18746					0.10660699251184269
ILEKVIDI	8	Unmodified	_ILEKVIDI_					0	0	0			REV__ENSG00000169018|ENST00000306917|FEM1B	REV__ENSG00000169018|ENST00000306917|FEM1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	471.797143	941.579734	0.54072	0.00025511	-0.51765	-0.00024422	0.023074	1.0886E-05	471.79685263997357	78.058	0.59319	78.058	77.822	78.415	0	0.0073819	3.6066E-06	NaN	41.84	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309590	+		14792	17494	8342	8342							0.10660699251184269
ILEKVIDI	8	Unmodified	_ILEKVIDI_					0	0	0			REV__ENSG00000169018|ENST00000306917|FEM1B	REV__ENSG00000169018|ENST00000306917|FEM1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	471.797143	941.579734	0.77292	0.00036466	-0.61603	-0.00029064	0.15689	7.4021E-05	471.796743788764	78.082	0.54188	78.051	77.759	78.301	-0.030434	0.00031933	-8.9227E-05	NaN	41.84	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280670	+		14793	17494	8342	8342							0.10660699251184269
ILEKVLYKC	9	Unmodified	_ILEKVLYKC_					0	0	0		L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|5|1|sense	L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|5|1|sense	L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|5|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3555297851562	2	554.825378	1107.6362	0.52523	0.00029141	1.7857	0.00099074	2.3109	0.0012822	554.826240320474	36.812	0.2562	36.812	36.673	36.93	0					15	8	2	0	0	0	0.25938	1	7504	7504		1.8442	0	1	83392			14794	12463	8343	8343	18747	18747					0.08669003816203258
ILEPGRYT	8	Unmodified	_ILEPGRYT_					0	0	0		ENST00000437420.5_1_2:207078065-207082099:-|nuORF;ENST00000407325.6_1_2:207078065-207082592:-|nuORF;ENST00000451790.5_2_2:207078065-207078338:-|nuORF	ENST00000437420.5_1_2:207078065-207082099:-|nuORF	ENST00000437420.5_1_2:207078065-207082099:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7735290527344	2	474.761092	947.507631	0.21936	0.00010415	1.1951	0.00056741	1.4145	0.00067155	474.76126004455284	89.592	0.11703	89.592	89.511	89.628	0					9	8	2	0	0	0	0.4397	2	23702	23702;23718		9.3474	1.4373	1	42188			14795	10230	8344	8344	18748;18749	18748					0.031777848974684275
ILEPGRYT	8	Unmodified	_ILEPGRYT_					0	0	0		ENST00000437420.5_1_2:207078065-207082099:-|nuORF;ENST00000407325.6_1_2:207078065-207082592:-|nuORF;ENST00000451790.5_2_2:207078065-207078338:-|nuORF	ENST00000437420.5_1_2:207078065-207082099:-|nuORF	ENST00000437420.5_1_2:207078065-207082099:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.77362060546875	2	474.761092	947.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.704	1	89.704	89.204	90.204	0								0	0	0	0.36169	1	23749	23749		9.3474	3.587	1				14796	10230	8344	8344	18750	18750					0.031777848974684275
ILEPGRYT	8	Unmodified	_ILEPGRYT_					0	0	0		ENST00000437420.5_1_2:207078065-207082099:-|nuORF;ENST00000407325.6_1_2:207078065-207082592:-|nuORF;ENST00000451790.5_2_2:207078065-207078338:-|nuORF	ENST00000437420.5_1_2:207078065-207082099:-|nuORF	ENST00000437420.5_1_2:207078065-207082099:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.7734680175781	2	474.761092	947.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.53	1	89.529	89.029	90.029	-0.00080872								0	0	0	0.36169	1	23683	23683		9.3474	0.75416	1				14797	10230	8344	8344	18751	18751					0.031777848974684275
ILEQPHAVLFV	11	Unmodified	_ILEQPHAVLFV_					0	0	0		ENSG00000083799|ENST00000427738|CYLD;nc|ENSG00000083799|Q9NQC7-2|CYLD;ENST00000569891.5_1_16:50783609-50818363:+|nuORF	ENSG00000083799|ENST00000427738|CYLD	ENSG00000083799|ENST00000427738|CYLD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.369140625	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.41	1	116.41	115.91	116.91	0								0	0	0	0.38126	1	30139	30139		1.1933	0.66858	1				14798	1228	8345	8345	18752	18752					0.09618822499624002
ILERNPMNLLN	11	Unmodified	_ILERNPMNLLN_					0	0	0		ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.51824951171875	3	442.911462	1325.71256	0.18132	8.0308E-05	-0.046894	-2.077E-05	0.13442	5.9538E-05	442.9115113105782	46.661	0.35905	46.661	46.43	46.789	0					23	12	3	0	0	0	0.32774	1	10471	10471		9.7643	3.1408	1	375850			14799	10697	8346	8346	18753	18753					0.06272775645538786
ILFDGIPLEK	10	Unmodified	_ILFDGIPLEK_					0	0	0		ENSG00000146085|ENST00000274813|MMUT;MUT|p.N198Ifs*3|1|0.37|ENSG00000146085|chr6:49457851-49457851|T/-|frameshift_variant	ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.8340454101562	2	572.834257	1143.65396	0.30639	0.00017551	-0.33668	-0.00019286	-0.030294	-1.7353E-05	572.8340369894233	66.649	0.82593	66.649	66.396	67.222	0					68	28	4	0	0	0	0.040516	1	16681	16681		61.09	37.069	1	776920			14800	4690	8347	8347	18754	18754					0.08788042342712288
ILFDGIPLEK	10	Unmodified	_ILFDGIPLEK_					0	0	0		ENSG00000146085|ENST00000274813|MMUT;MUT|p.N198Ifs*3|1|0.37|ENSG00000146085|chr6:49457851-49457851|T/-|frameshift_variant	ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.834228515625	2	572.834257	1143.65396	0.38413	0.00022004	-0.22847	-0.00013088	0.15566	8.9165E-05	572.8340797692919	66.497	0.82913	66.581	66.327	67.156	0.083832					65	29	3	0	0	0	0.067258	2	16655	16655;16706		55.235	31.214	1	766550			14801	4690	8347	8347	18755;18756	18755					0.08788042342712288
ILFDGIPLEK	10	Unmodified	_ILFDGIPLEK_					0	0	0		ENSG00000146085|ENST00000274813|MMUT;MUT|p.N198Ifs*3|1|0.37|ENSG00000146085|chr6:49457851-49457851|T/-|frameshift_variant	ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.8341064453125	2	572.834257	1143.65396	0.14244	8.1595E-05	-0.16321	-9.3493E-05	-0.020771	-1.1898E-05	572.8342459786204	66.627	0.63066	66.613	66.353	66.984	-0.013588					64	22	4	0	0	0	0.067258	1	16698	16698		55.235	31.214	1	792480			14802	4690	8347	8347	18757	18757					0.08788042342712288
ILFFFMFL	8	Unmodified	_ILFFFMFL_					0	0	0			REV__ENST00000295754.9_1_3:30735309-30735375:+|nuORF	REV__ENST00000295754.9_1_3:30735309-30735375:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7965698242188	2	539.295725	1076.5769	0.41741	0.00022511	-0.18719	-0.00010095	0.23022	0.00012416	539.2950357590714	82.203	1.4205	82.272	81.95	83.37	0.068993					84	51	3	0	0	0	0.28567	1	21390	21390		32.454	1.8171	1	481430	+		14803	19781	8348	8348	18758	18758					0.04167152592685852
ILFFHIENRL	10	Unmodified	_ILFFHIENRL_					0	0	0			REV__ENSG00000237765|ENST00000422728|FAM200B	REV__ENSG00000237765|ENST00000422728|FAM200B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2192077636719	3	434.583674	1300.72919	-0.0028505	-1.2388E-06	0.061409	2.6687E-05	0.058559	2.5449E-05	434.58367576660686	51.662	0.57689	51.709	51.479	52.056	0.046574					40	19	3	0	0	0	0.31696	1	12072	12072		10.151	0	1	366490	+		14804	19158	8349	8349	18759	18759					0.0908564459380159
ILFHQTLYQK	10	Unmodified	_ILFHQTLYQK_					0	0	0		ENST00000398050.3_1_10:127355985-127356390:-|nuORF	ENST00000398050.3_1_10:127355985-127356390:-|nuORF	ENST00000398050.3_1_10:127355985-127356390:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	645.8638305664062	2	645.86388	1289.71321	0.23099	0.00014919	-0.20579	-0.00013291	0.025204	1.6278E-05	645.8636081167094	16.038	0.42417	15.975	15.781	16.205	-0.062534					25	14	3	0	0	0	0.4046	1	1218	1218		2.4985	1.0166	1	41955			14805	10152	8350	8350	18760	18760					0.07993938356912622
ILFHQTLYQK	10	Unmodified	_ILFHQTLYQK_					0	0	0		ENST00000398050.3_1_10:127355985-127356390:-|nuORF	ENST00000398050.3_1_10:127355985-127356390:-|nuORF	ENST00000398050.3_1_10:127355985-127356390:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	645.86388	1289.71321	0.24535	0.00015846	0.27245	0.00017597	0.5178	0.00033443	645.8635217428114	15.981	0.30687	15.981	15.816	16.123	0	0.025905	0.00056948	NaN	2.4985	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38465			14806	10152	8350	8350							0.07993938356912622
ILFHQTLYQK	10	Unmodified	_ILFHQTLYQK_					0	0	0		ENST00000398050.3_1_10:127355985-127356390:-|nuORF	ENST00000398050.3_1_10:127355985-127356390:-|nuORF	ENST00000398050.3_1_10:127355985-127356390:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	645.86388	1289.71321	0.2004	0.00012943	-0.20382	-0.00013164	-0.0034212	-2.2096E-06	645.8635656678991	16.024	0.43598	15.91	15.811	16.247	-0.11434	-0.04583	-4.5735E-05	NaN	2.4985	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26654			14807	10152	8350	8350							0.07993938356912622
ILFLLLYR	8	Unmodified	_ILFLLLYR_					0	0	0			REV__ENST00000507175.5_1_5:145838810-145843302:+|nuORF	REV__ENST00000507175.5_1_5:145838810-145843302:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8193359375	2	525.839146	1049.66374	0.64024	0.00033666	2.8737	0.0015111	3.5139	0.0018477	525.8420010551359	49.5	0.48579	49.5	49.243	49.729	0					35	17	3	0	0	0	0.32435	1	11338	11338		23.148	5.0134	1	223230	+		14808	21757	8351	8351	18761	18761					0.1408927513875824
ILFLLYHF	8	Unmodified	_ILFLLYHF_					0	0	0		nc|ENSG00000150275|Q96QU1|PCDH15;nc|ENSG00000150275|Q96QU1-2|PCDH15;ENST00000463095.2_1_10:55581620-55664971:-|nuORF	nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1|PCDH15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2090454101562	2	533.310221	1064.60589	0.58188	0.00031032	2.4166	0.0012888	2.9985	0.0015991	533.8118650801899	93.903	0.17862	93.903	93.8	93.979	-0.00051117					15	12	2	0	0	0	0.34297	1	25043	25043		6.3541	2.0249	1	96618			14809	12756	8352	8352	18762	18762					0.07617013213325663
ILFLTDLHW	9	Unmodified	_ILFLTDLHW_					0	0	0		nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1;nc|ENSG00000166311|P17405-3|SMPD1;nc|ENSG00000166311|P17405-2|SMPD1	nc|ENSG00000166311|P17405-4|SMPD1	nc|ENSG00000166311|P17405-4|SMPD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.7970581054688	2	579.321317	1156.62808	0.50119	0.00029035	-0.83529	-0.0004839	-0.3341	-0.00019355	579.3206118835228	64.301	0.39828	64.292	64.017	64.415	-0.0095367					21	14	2	0	0	0	0.25066	1	15912	15912		7.2892	5.9597	1	137420			14810	6060	8353	8353	18763	18763					0.056031928910670104
ILFRKAVFQRL	11	Unmodified	_ILFRKAVFQRL_					0	0	0		ENSG00000160013|ENST00000291294|PTGIR	ENSG00000160013|ENST00000291294|PTGIR	ENSG00000160013|ENST00000291294|PTGIR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.62890625	3	464.294235	1389.86087	-0.27782	-0.00012899	0.29555	0.00013722	0.017734	8.2337E-06	464.6286811179127	42.222	0.59669	42.222	42.055	42.652	0					32	21	2	0	0	0	0.47633	1	9187	9187		1.2148	0	1	608050			14811	5432	8354	8354	18764	18764					0.18153874681547677
ILFRKAVFQRL	11	Unmodified	_ILFRKAVFQRL_					0	0	0		ENSG00000160013|ENST00000291294|PTGIR	ENSG00000160013|ENST00000291294|PTGIR	ENSG00000160013|ENST00000291294|PTGIR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.29437255859375	3	464.294235	1389.86087	0.32835	0.00015245	0.26867	0.00012474	0.59701	0.00027719	464.2946076421353	42.102	0.43167	42.193	41.981	42.413	0.091362					32	14	3	0	0	0	0.47633	1	9133	9133		1.2148	0	1	407100			14812	5432	8354	8354	18765	18765					0.18153874681547677
ILFRKAVFQRL	11	Unmodified	_ILFRKAVFQRL_					0	0	0		ENSG00000160013|ENST00000291294|PTGIR	ENSG00000160013|ENST00000291294|PTGIR	ENSG00000160013|ENST00000291294|PTGIR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	464.294235	1389.86087	0.096372	4.4745E-05	0.011626	5.3978E-06	0.108	5.0143E-05	464.2943077005423	42.163	0.6062	42.249	41.959	42.565	0.085197	0.027242	-0.00023075	NaN	1.2148	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384270			14813	5432	8354	8354							0.18153874681547677
ILFRRKLM	8	Unmodified	_ILFRRKLM_					0	0	0			REV__ENST00000424989.1_1_1:37921191-37921512:-|nuORF	REV__ENST00000424989.1_1_1:37921191-37921512:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.86328125	2	538.841697	1075.66884	0.25441	0.00013709	4.4249	0.0023843	4.6793	0.0025214	538.8441761134058	73.639	0.19339	73.639	73.468	73.661	0					11	6	2	0	0	0	0.33995	1	18813	18813		15.768	1.1865	1	339910	+		14814	20893	8355	8355	18766	18766					0.13403255729713237
ILFSYLSVWF	10	Unmodified	_ILFSYLSVWF_					0	0	0		ENST00000372718.7_1_1:40887792-40887975:+|nuORF	ENST00000372718.7_1_1:40887792-40887975:+|nuORF	ENST00000372718.7_1_1:40887792-40887975:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.5663757324219	3	425.565509	1273.6747	0.10765	4.5814E-05	1.4779	0.00062894	1.5855	0.00067475	425.5662810615157	58.031	0.61597	58.014	57.767	58.383	-0.0172					51	22	3	0	0	0	0.33268	1	14045	14045		9.544	1.0997	1	494250			14815	9851	8356	8356	18767	18767					0.048806327223474
ILFSYLSVWF	10	Unmodified	_ILFSYLSVWF_					0	0	0		ENST00000372718.7_1_1:40887792-40887975:+|nuORF	ENST00000372718.7_1_1:40887792-40887975:+|nuORF	ENST00000372718.7_1_1:40887792-40887975:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	425.565509	1273.6747	-0.03913	-1.6652E-05	1.7873	0.0007606	1.7481	0.00074395	425.56638233687437	58.055	0.69484	58.055	57.718	58.413	0	0.026897	0.00023411	NaN	9.544	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	386580			14816	9851	8356	8356							0.048806327223474
ILFSYLSVWF	10	Unmodified	_ILFSYLSVWF_					0	0	0		ENST00000372718.7_1_1:40887792-40887975:+|nuORF	ENST00000372718.7_1_1:40887792-40887975:+|nuORF	ENST00000372718.7_1_1:40887792-40887975:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	425.565509	1273.6747	-0.062005	-2.6387E-05	1.6546	0.00070413	1.5926	0.00067774	425.5663776399921	57.931	0.57519	58.016	57.812	58.387	0.085621	-0.012274	6.4685E-05	NaN	9.544	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374250			14817	9851	8356	8356							0.048806327223474
ILFTDNCEV	9	Unmodified	_ILFTDNCEV_					0	0	0		nc|ENSG00000005189|Q96IC2-2|REXO5;ENSG00000005189|ENST00000261377|REXO5;ENST00000567297.5_1_16:20818275-20837201:+|nuORF;ENST00000566276.5_1_16:20818034-20826310:+|nuORF	nc|ENSG00000005189|Q96IC2-2|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7704467773438	2	527.2497	1052.48485	0.42893	0.00022615	-2.1947	-0.0011572	-1.7658	-0.00093101	527.2489129555627	82.407	0.2027	82.481	82.314	82.517	0.073097					11	8	2	0	0	0	0.23784	1	21497	21497		19.257	4.4187	1	136700			14818	328	8357	8357	18768	18768					-0.03929602282300948
ILFVMFPVLR	10	Unmodified	_ILFVMFPVLR_					0	0	0			REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.250732421875	3	412.250867	1233.73077	-0.15462	-6.3743E-05	-0.81624	-0.0003365	-0.97087	-0.00040024	412.25048038339486	18.133	0.55555	18.133	17.835	18.391	0					42	18	3	0	0	0	0.39782	1	1837	1837		3.8763	0.55669	1	87975	+		14819	17202	8358	8358	18769	18769					0.12325562358182651
ILFVMFPVLR	10	Unmodified	_ILFVMFPVLR_					0	0	0			REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	412.250867	1233.73077	-0.15462	-6.3743E-05	-0.81624	-0.0003365	-0.97087	-0.00040024	412.25048038339486	18.133	0.55555	18.133	17.835	18.391	0	-0.10864	0.00048196	NaN	3.8763	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87975	+		14820	17202	8358	8358							0.12325562358182651
ILFVMFPVLR	10	Unmodified	_ILFVMFPVLR_					0	0	0			REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	412.250867	1233.73077	0.025432	1.0484E-05	-1.2561	-0.00051785	-1.2307	-0.00050736	412.25032298746453	18.32	0.48441	18.202	17.985	18.47	-0.11739	-0.039019	-6.2089E-05	NaN	3.8763	48	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117340	+		14821	17202	8358	8358							0.12325562358182651
ILFVMFPVLR	10	Unmodified	_ILFVMFPVLR_					0	0	0			REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	412.250867	1233.73077	-0.15965	-6.5814E-05	-2.6053	-0.001074	-2.7649	-0.0011398	412.24957097167515	18.447	0.5924	18.389	18.115	18.707	-0.058174	0.14765	-0.0017306	NaN	3.8763	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124010	+		14822	17202	8358	8358							0.12325562358182651
ILGDRGKTGK	10	Unmodified	_ILGDRGKTGK_					0	0	0			REV__ENSG00000197565|ENST00000334504|COL4A6	REV__ENSG00000197565|ENST00000334504|COL4A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.303955078125	2	522.811648	1043.60874	0.11458	5.9905E-05	-0.54413	-0.00028448	-0.42955	-0.00022457	522.81110904033	12.351	0.42105	12.351	12.219	12.641	0					24	12	3	0	0	0	0.32146	1	75	75		1.1933	0	1	56561	+		14823	18745	8359	8359	18770	18770					0.08868236600187629
ILGLPILNM	9	Unmodified	_ILGLPILNM_					0	0	0		SLC22A8|p.L74Sfs*36|1|0.18|ENSG00000149452|chr11:63014739-63014739|G/-|frameshift_variant;SLC22A8|p.M346Yfs*90|1|0.34|ENSG00000149452|chr11:62994722-62994723|-/A|frameshift_variant;ENSG00000149452|ENST00000336232|SLC22A8;nc|ENSG00000149452|Q8TCC7-2|SLC22A8	SLC22A8|p.L74Sfs*36|1|0.18|ENSG00000149452|chr11:63014739-63014739|G/-|frameshift_variant	SLC22A8|p.L74Sfs*36|1|0.18|ENSG00000149452|chr11:63014739-63014739|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.30133056640625	2	492.301539	982.588524	0.38541	0.00018974	-0.02512	-1.2367E-05	0.36029	0.00017737	492.3012362356734	63.15	0.80898	63.15	62.856	63.665	0					48	29	3	0	0	0	0.079066	1	15648	15648		42.095	9.9776	1	284420			14824	4866	8360	8360	18771	18771					0.09653349616019113
ILGLPILNM	9	Unmodified	_ILGLPILNM_					0	0	0		SLC22A8|p.L74Sfs*36|1|0.18|ENSG00000149452|chr11:63014739-63014739|G/-|frameshift_variant;SLC22A8|p.M346Yfs*90|1|0.34|ENSG00000149452|chr11:62994722-62994723|-/A|frameshift_variant;ENSG00000149452|ENST00000336232|SLC22A8;nc|ENSG00000149452|Q8TCC7-2|SLC22A8	SLC22A8|p.L74Sfs*36|1|0.18|ENSG00000149452|chr11:63014739-63014739|G/-|frameshift_variant	SLC22A8|p.L74Sfs*36|1|0.18|ENSG00000149452|chr11:63014739-63014739|G/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	492.301539	982.588524	0.43231	0.00021283	-0.077205	-3.8008E-05	0.3551	0.00017482	492.30124425702707	63.014	0.68366	63.109	62.88	63.564	0.095726	-0.0053252	-2.3968E-05	NaN	42.095	44	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368670			14825	4866	8360	8360							0.09653349616019113
ILGLPILNM	9	Unmodified	_ILGLPILNM_					0	0	0		SLC22A8|p.L74Sfs*36|1|0.18|ENSG00000149452|chr11:63014739-63014739|G/-|frameshift_variant;SLC22A8|p.M346Yfs*90|1|0.34|ENSG00000149452|chr11:62994722-62994723|-/A|frameshift_variant;ENSG00000149452|ENST00000336232|SLC22A8;nc|ENSG00000149452|Q8TCC7-2|SLC22A8	SLC22A8|p.L74Sfs*36|1|0.18|ENSG00000149452|chr11:63014739-63014739|G/-|frameshift_variant	SLC22A8|p.L74Sfs*36|1|0.18|ENSG00000149452|chr11:63014739-63014739|G/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	492.301539	982.588524	0.32124	0.00015815	-0.058664	-2.888E-05	0.26258	0.00012927	492.30125014153305	63.093	0.51905	63.084	62.86	63.379	-0.0085564	-0.030545	-5.7125E-06	NaN	42.095	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327570			14826	4866	8360	8360							0.09653349616019113
ILGPPPPSF	9	Unmodified	_ILGPPPPSF_					0	0	0		ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000511978.5_1_5:138651425-138655027:+|nuORF;ENST00000509918.5_1_5:138651425-138657594:+|nuORF	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.76318359375	2	462.763104	923.511654	0.22406	0.00010369	0.17988	8.3241E-05	0.40394	0.00018693	462.7630789500032	64.182	1.7661	64.182	63.722	65.488	0					144	64	3	0	0	0	4.2225E-11	5	16020	15877;15923;15971;16020;16074		189.49	115.1	1	1974500			14827	481	8361	8361	18772;18773;18774;18775;18776	18775					0.046838743911848724
ILGPPPPSF	9	Unmodified	_ILGPPPPSF_					0	0	0		ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000511978.5_1_5:138651425-138655027:+|nuORF;ENST00000509918.5_1_5:138651425-138657594:+|nuORF	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.7632141113281	2	462.763104	923.511654	0.18486	8.5544E-05	0.2094	9.69E-05	0.39425	0.00018244	462.76308782924735	64.117	1.6192	64.21	63.765	65.384	0.09288					145	59	3	0	0	0	2.4965E-07	5	15892	15846;15892;15934;15982;16034		170.4	106.83	1	1988000			14828	481	8361	8361	18777;18778;18779;18780;18781	18778					0.046838743911848724
ILGPPPPSF	9	Unmodified	_ILGPPPPSF_					0	0	0		ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000511978.5_1_5:138651425-138655027:+|nuORF;ENST00000509918.5_1_5:138651425-138657594:+|nuORF	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.7630920410156	2	462.763104	923.511654	0.37896	0.00017537	0.018842	8.7194E-06	0.3978	0.00018409	462.76298441140324	64.192	1.7051	64.183	63.745	65.45	-0.0095367					149	62	4	0	0	0	4.2225E-11	5	16020	15874;15921;15971;16020;16070		189.49	115.1	1	1883500			14829	481	8361	8361	18782;18783;18784;18785;18786	18785					0.046838743911848724
ILGSERKKT	9	Unmodified	_ILGSERKKT_					0	0	0		ENSG00000102174|ENST00000379374|PHEX	ENSG00000102174|ENST00000379374|PHEX	ENSG00000102174|ENST00000379374|PHEX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.3141479492188	2	516.314023	1030.61349	0.46504	0.00024011	-0.080923	-4.1782E-05	0.38412	0.00019833	516.314063938278	88.922	2.1153	88.922	88.403	90.518	0					346	134	7	0	0	0	0.31038	1	23442	23442		7.2892	7.2892	1	6571200			14830	1750	8362	8362	18787	18787					0.0994112074295117
ILGSERKKT	9	Unmodified	_ILGSERKKT_					0	0	0		ENSG00000102174|ENST00000379374|PHEX	ENSG00000102174|ENST00000379374|PHEX	ENSG00000102174|ENST00000379374|PHEX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.3142700195312	2	516.314023	1030.61349	0.34612	0.00017871	0.26627	0.00013748	0.61239	0.00031618	516.3141156803164	88.845	1.513	88.935	88.495	90.008	0.090569					232	85	4	0	0	0	0.33276	1	23652	23652		3.9444	0	1	6243700			14831	1750	8362	8362	18788	18788					0.0994112074295117
ILGSERKKT	9	Unmodified	_ILGSERKKT_					0	0	0		ENSG00000102174|ENST00000379374|PHEX	ENSG00000102174|ENST00000379374|PHEX	ENSG00000102174|ENST00000379374|PHEX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.3143310546875	2	516.314023	1030.61349	0.32446	0.00016752	0.28251	0.00014586	0.60696	0.00031338	516.3141153441646	88.954	1.452	88.953	88.541	89.993	-0.00080872					230	86	4	0	0	0	0.33276	1	23695	23695		3.9444	3.9444	1	7062300			14832	1750	8362	8362	18789	18789					0.0994112074295117
ILGVEPQALL	10	Unmodified	_ILGVEPQALL_					0	0	0			REV__ENSG00000001617|ENST00000002829|SEMA3F	REV__ENSG00000001617|ENST00000002829|SEMA3F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.8214111328125	2	526.82115	1051.62775	0.48663	0.00025637	0.15461	8.1449E-05	0.64123	0.00033782	526.8212174616017	80.524	0.59358	80.524	80.294	80.888	0					44	24	2	0	0	0	0.31867	1	20930	20930		18.146	1.9972	1	494150	+		14833	13316	8363	8363	18790	18790					0.10399773171252491
ILHFIQLFF	9	Unmodified	_ILHFIQLFF_					0	0	0		ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3439331054688	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.45	1	115.43	114.93	115.93	-0.020988								0	0	0	0.26334	1	29941	29941		2.0598	0.40713	1				14834	2648	8364	8364	18791	18791					0.08828373650385402
ILHGVAKKMVR	11	Unmodified	_ILHGVAKKMVR_					0	0	0			REV__nc|ENSG00000116984|Q99707-2|MTR	REV__nc|ENSG00000116984|Q99707-2|MTR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.3888549804688	2	626.389542	1250.76453	-0.03195	-2.0013E-05	-0.06896	-4.3196E-05	-0.10091	-6.3209E-05	626.8901724686411	104.43	0.13857	104.43	104.4	104.54	0					27	18	2	0	0	0	0.47546	1	27727	27727		1.3295	0	1	182430	+		14835	14951	8365	8365	18792	18792					0.1491798384993217
ILHIDDIRYYI	11	Unmodified	_ILHIDDIRYYI_					0	0	0		nc|ENSG00000006634|Q9UBU7-2|DBF4;ENSG00000006634|ENST00000265728|DBF4	nc|ENSG00000006634|Q9UBU7-2|DBF4	nc|ENSG00000006634|Q9UBU7-2|DBF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.79229736328125	3	478.59776	1432.77145	0.20747	9.9293E-05	4.1187	0.0019712	4.3262	0.0020705	478.5998876033806	43.202	0.16527	43.286	43.19	43.356	0.083996					8	5	2	0	0	0	0.33316	1	9454	9454		2.084	0.15646	1	128500			14836	365	8366	8366	18793	18793					0.07237575211524927
ILHIDDIRYYI	11	Unmodified	_ILHIDDIRYYI_					0	0	0		nc|ENSG00000006634|Q9UBU7-2|DBF4;ENSG00000006634|ENST00000265728|DBF4	nc|ENSG00000006634|Q9UBU7-2|DBF4	nc|ENSG00000006634|Q9UBU7-2|DBF4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	478.59776	1432.77145	0.14815	7.0903E-05	4.8261	0.0023098	4.9743	0.0023807	478.6002280715755	43.454	0.16173	43.454	43.414	43.576	0	0.083857	0.00021396	NaN	2.084	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171800			14837	365	8366	8366							0.07237575211524927
ILHVKSNLT	9	Unmodified	_ILHVKSNLT_					0	0	0		ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2867431640625	2	512.811116	1023.60768	0.54421	0.00027908	-1.8239	-0.0009353	-1.2797	-0.00065622	512.8108061822602	48.623	0.38202	48.668	48.442	48.824	0.044891					19	13	2	0	0	0	0.16284	1	11100	11100		30.637	6.616	1	275770			14838	6548	8367	8367	18794	18794					0.09682022231265819
ILHYDVMNRS	10	Unmodified	_ILHYDVMNRS_					0	0	0			REV__nc|ENSG00000135372|Q9H0A0-2|NAT10	REV__nc|ENSG00000135372|Q9H0A0-2|NAT10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.3124389648438	2	624.313697	1246.61284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.935	1	82.004	81.504	82.504	0.068993								0	0	0	0.37807	1	21356	21356		2.9952	0	1		+		14839	15737	8368	8368	18795	18795					-0.0006004196843605314
ILIDPLTW	8	Unmodified	_ILIDPLTW_					0	0	0			REV__nc|ENSG00000154914|Q70EL4-4|USP43	REV__nc|ENSG00000154914|Q70EL4-4|USP43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.783447265625	2	485.784036	969.553519	0.32171	0.00015628	-1.2702	-0.00061704	-0.94848	-0.00046076	485.78332665940366	88.762	0.56796	88.851	88.574	89.142	0.089195					42	23	3	0	0	0	0.41758	1	23440	23440		16.942	1.0951	1	226190	+		14840	16683	8369	8369	18796	18796					0.06752430079700389
ILIDPLTW	8	Unmodified	_ILIDPLTW_					0	0	0			REV__nc|ENSG00000154914|Q70EL4-4|USP43	REV__nc|ENSG00000154914|Q70EL4-4|USP43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7831115722656	2	485.784036	969.553519	0.3756	0.00018246	-1.0759	-0.00052266	-0.70031	-0.0003402	485.7835318559078	88.839	0.63873	88.838	88.562	89.201	-0.00080872					33	24	2	0	0	0	0.41758	1	23488	23488		16.942	1.0951	1	233200	+		14841	16683	8369	8369	18797	18797					0.06752430079700389
ILIETYTG	8	Unmodified	_ILIETYTG_					0	0	0		ENSG00000188001|ENST00000345063|TPRG1	ENSG00000188001|ENST00000345063|TPRG1	ENSG00000188001|ENST00000345063|TPRG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2774353027344	2	455.250026	908.485499	0.66959	0.00030483	0.97938	0.00044586	1.649	0.00075069	455.24839923673807	78.059	1.2015	78.029	77.542	78.744	-0.030426					87	44	3	0	0	0	0.34218	1	20154	20154		5.2307	0	1	391430			14842	7724	8370	8370	18798	18798					0.027595604290581832
ILIKEDYFPR	10	Unmodified	_ILIKEDYFPR_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.3623657226562	2	647.363713	1292.71287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.49	1	103.5	103	104	0.0082703								0	0	0	0.36581	1	27503	27503		8.1555	0	1				14843	2872	8371	8371	18799	18799					0.07822518637021858
ILIPFPYKQF	10	Unmodified	_ILIPFPYKQF_					0	0	0			REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3689575195312	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.83	1	119.86	119.36	120.36	0.027756								0	0	0	0.38201	1	30979	30979		0.45834	0	1		+		14844	16183	8372	8372	18800	18800					0.10020911993342452
ILIVFDVEF	9	Unmodified	_ILIVFDVEF_					0	0	0		ENST00000605778.1_1_7:35737925-35738120:+|nuORF	ENST00000605778.1_1_7:35737925-35738120:+|nuORF	ENST00000605778.1_1_7:35737925-35738120:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.797607421875	2	547.810251	1093.60595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.031	1	56.012	55.512	56.512	-0.019081								0	0	0	0.22789	1	13417	13417		13.508	0	1				14845	12289	8373	8373	18801	18801					0.06288968422654762
ILKATRSII	9	Unmodified	_ILKATRSII_					0	0	0			REV__nc|ENSG00000067141|Q92859-3|NEO1	REV__nc|ENSG00000067141|Q92859-3|NEO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.788330078125	2	507.837134	1013.65972	-0.066686	-3.3866E-05	-0.11024	-5.5985E-05	-0.17693	-8.9851E-05	507.8369836259649	14.061	0.17611	13.957	13.873	14.049	-0.10466					8	5	2	0	0	0	0.26031	1	633	633		3.5965	0	1	24547	+		14846	13685	8374	8374	18802	18802					0.153431856450311
ILKHKKSL	8	Unmodified	_ILKHKKSL_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.8269348144531	2	483.826569	965.638586	0.28488	0.00013783	0.4661	0.00022551	0.75098	0.00036335	483.8266687752389	39.679	1.0614	39.771	39.47	40.531	0.09267					89	37	4	0	0	0	0.28088	1	8385	8385		39.957	7.6518	1	2579700			14847	1530	8375	8375	18803	18803					0.1543922033616809
ILKKILDI	8	Unmodified	_ILKKILDI_					0	0	0		ENSG00000258484|ENST00000310673|SPESP1	ENSG00000258484|ENST00000310673|SPESP1	ENSG00000258484|ENST00000310673|SPESP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.78173828125	2	478.331153	954.647754	0.17264	8.2581E-05	0.070425	3.3686E-05	0.24307	0.00011627	478.33114629363786	57.649	0.89038	57.649	57.578	58.468	0					45	31	2	0	0	0	0.32778	1	14033	14033		14.582	0	1	242210			14848	8642	8376	8376	18804	18804					0.16861568901856572
ILKLKKGKFPF	11	Unmodified	_ILKLKKGKFPF_					0	0	0		nc|ENSG00000141562|Q9UHQ1-4|NARF;nc|ENSG00000141562|Q9UHQ1-3|NARF;ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;ENST00000577812.5_1_17:80442656-80446030:+|nuORF	nc|ENSG00000141562|Q9UHQ1-4|NARF	nc|ENSG00000141562|Q9UHQ1-4|NARF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.2685546875	3	440.291831	1317.85366	0.17507	7.7083E-05	0.8456	0.00037231	1.0207	0.0004494	440.2922929437704	51.618	0.87591	51.618	51.222	52.098	0					56	32	2	0	0	0	0.3333	1	12190	12190		1.3296	1.3296	1	368610			14849	4394	8377	8377	18805	18805					0.20745142081091217
ILKLKKGKFPF	11	Unmodified	_ILKLKKGKFPF_					0	0	0		nc|ENSG00000141562|Q9UHQ1-4|NARF;nc|ENSG00000141562|Q9UHQ1-3|NARF;ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;ENST00000577812.5_1_17:80442656-80446030:+|nuORF	nc|ENSG00000141562|Q9UHQ1-4|NARF	nc|ENSG00000141562|Q9UHQ1-4|NARF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.2685546875	3	440.291831	1317.85366	0.04285	1.8866E-05	1.0893	0.00047962	1.1322	0.00049849	440.29238392351965	51.657	0.69699	51.667	51.347	52.044	0.0095634					43	25	2	0	0	0	0.3333	1	12173	12173		1.3296	1.2463	1	310730			14850	4394	8377	8377	18806	18806					0.20745142081091217
ILKLKKGKFPF	11	Unmodified	_ILKLKKGKFPF_					0	0	0		nc|ENSG00000141562|Q9UHQ1-4|NARF;nc|ENSG00000141562|Q9UHQ1-3|NARF;ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;ENST00000577812.5_1_17:80442656-80446030:+|nuORF	nc|ENSG00000141562|Q9UHQ1-4|NARF	nc|ENSG00000141562|Q9UHQ1-4|NARF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	440.291831	1317.85366	0.092717	4.0823E-05	1.32	0.00058117	1.4127	0.00062199	440.2925352494775	51.514	0.73555	51.56	51.245	51.981	0.046574	-0.054547	0.00027645	NaN	1.3296	54	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354130			14851	4394	8377	8377							0.20745142081091217
ILKMFVDLN	9	Unmodified	_ILKMFVDLN_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENSG00000156052|ENST00000286548|GNAQ;ENST00000444815.2_1_2:132181395-132181932:-|nuORF	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.3480224609375	2	546.809728	1091.6049	0.94303	0.00051566	0.36804	0.00020125	1.3111	0.0007169	546.8098352616126	56.378	0.8199	56.457	56.221	57.04	0.078674					39	30	2	0	0	0	0.24311	1	13702	13702		11.64	0.81637	1	538850			14852	1319	8378	8378	18807	18807					0.06276430782122588
ILKMFVDLN	9	Unmodified	_ILKMFVDLN_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENSG00000156052|ENST00000286548|GNAQ;ENST00000444815.2_1_2:132181395-132181932:-|nuORF	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	546.809728	1091.6049	0.65064	0.00035577	0.60367	0.00033009	1.2543	0.00068587	547.3118117216349	56.5	0.77444	56.5	56.212	56.986	0	-0.010537	0.00025431	NaN	11.64	41	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485270			14853	1319	8378	8378							0.06276430782122588
ILKMFVDLN	9	Unmodified	_ILKMFVDLN_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENSG00000156052|ENST00000286548|GNAQ;ENST00000444815.2_1_2:132181395-132181932:-|nuORF	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	546.809728	1091.6049	1.1988	0.00065549	0.068705	3.7569E-05	1.2675	0.00069306	546.8094394927574	56.593	0.5653	56.574	56.379	56.944	-0.019081	0.063945	-0.00033074	NaN	11.64	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	470620			14854	1319	8378	8378							0.06276430782122588
ILKQGKDPL	9	Unmodified	_ILKQGKDPL_					0	0	0			REV__nc|ENSG00000116830|Q9UNY4-2|TTF2	REV__nc|ENSG00000116830|Q9UNY4-2|TTF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.3133850097656	2	506.313492	1010.61243	0.30664	0.00015525	-0.24209	-0.00012257	0.064547	3.2681E-05	506.3133638909481	57.157	0.68274	57.235	56.909	57.591	0.078674					69	24	4	0	0	0	0.18803	1	13779	13779		25.399	1.3787	1	1961500	+		14855	14943	8379	8379	18808	18808					0.1075490637402936
ILKQNAPLI	9	Unmodified	_ILKQNAPLI_					0	0	0			REV__ENST00000498171.5_1_22:20077477-20097628:+|nuORF	REV__ENST00000498171.5_1_22:20077477-20097628:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2771911621094	2	505.32386	1008.63317	0.31775	0.00016057	-0.9318	-0.00047086	-0.61405	-0.0003103	505.32369910699083	57.251	0.27859	57.332	57.235	57.513	0.0807					16	9	3	0	0	0	0.25202	1	13846	13846		6.7232	0.51738	1	229520	+		14856	15364	8380	8380	18809	18809					0.12919496753693238
ILKQVVKIF	9	Unmodified	_ILKQVVKIF_					0	0	0			REV__RRAGC|p.S230I|1|0.05|ENSG00000116954|chr1:38852441-38852441|C/A|missense_variant	REV__RRAGC|p.S230I|1|0.05|ENSG00000116954|chr1:38852441-38852441|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3474731445312	2	544.365527	1086.7165	1.1845	0.0006448	-0.07349	-4.0006E-05	1.111	0.0006048	544.365603676021	50.279	0.13525	50.299	50.252	50.387	0.020691					5	4	2	0	0	0	0.25417	1	11636	11636		4.756	0	1	58423	+		14857	23302	8381	8381	18810	18810					0.1766123320155657
ILKTHLPF	8	Unmodified	_ILKTHLPF_					0	0	0		ENSG00000198075|ENST00000272452|SULT1C4	ENSG00000198075|ENST00000272452|SULT1C4	ENSG00000198075|ENST00000272452|SULT1C4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7597961425781	2	484.80002	967.585488	0.46504	0.00022545	2.2525	0.001092	2.7175	0.0013175	484.8007416115141	53.84	0.16167	53.84	53.723	53.884	0					6	5	2	0	0	0	0.34185	1	12723	12723		10.183	3.8293	1	58293			14858	8035	8382	8382	18811	18811					0.10039842553521794
ILLCEKYTQ	9	Unmodified	_ILLCEKYTQ_					0	0	0		ENST00000505896.5_1_5:49695109-49707239:-|nuORF;nc|ENSG00000170571|Q6PCB8-2|EMB;ENSG00000170571|ENST00000303221|EMB	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7974853515625	2	555.796817	1109.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.68	1	118.68	118.18	119.18	0								0	0	0	0.264	1	30647	30647		1.8442	0	1				14859	6465	8383	8383	18812	18812					0.028675365398157737
ILLCFEGLLF	10	Unmodified	_ILLCFEGLLF_					0	0	0		ENST00000479314.1_1_3:44968183-44974766:-|nuORF;ENSG00000163812|ENST00000424952|ZDHHC3;nc|ENSG00000163812|Q9NYG2-2|ZDHHC3	ENST00000479314.1_1_3:44968183-44974766:-|nuORF	ENST00000479314.1_1_3:44968183-44974766:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3566284179688	2	584.327753	1166.64095	0.44503	0.00026004	-0.6767	-0.00039541	-0.23167	-0.00013537	584.3268118275391	79.678	0.30849	79.649	79.443	79.751	-0.028931					17	11	2	0	0	0	0.28898	1	20616	20616		23.148	2.2772	1	86159			14860	5737	8384	8384	18813	18813					0.06429887958961444
ILLCMSLLLF	10	Unmodified	_ILLCMSLLLF_					0	0	0		nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P;nc|ENSG00000290456|Q8N1L4|CYP4Z2P;ENSG00000186160|ENST00000334194|CYP4Z1	nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P	nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3565673828125	2	583.339806	1164.66506	0.47752	0.00027856	0.11875	6.9269E-05	0.59627	0.00034783	583.3397837558309	79.194	0.51171	79.194	78.929	79.441	0					47	21	3	0	0	0	0.33268	1	20543	20543		15.847	1.0089	1	332130			14861	7596	8385	8385	18814	18814					0.08931405120983982
ILLCMSLLLF	10	Unmodified	_ILLCMSLLLF_					0	0	0		nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P;nc|ENSG00000290456|Q8N1L4|CYP4Z2P;ENSG00000186160|ENST00000334194|CYP4Z1	nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P	nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3563232421875	2	583.339806	1164.66506	0.41722	0.00024338	0.33022	0.00019263	0.74744	0.00043601	583.3399293857971	79.177	0.54423	79.238	78.971	79.516	0.061417					58	25	3	0	0	0	0.32673	1	20531	20531		16.942	1.0951	1	270050			14862	7596	8385	8385	18815	18815					0.08931405120983982
ILLDIDTKR	9	Unmodified	_ILLDIDTKR_					0	0	0			REV__ENST00000433477.3_1_4:156845437-156845545:-|nuORF	REV__ENST00000433477.3_1_4:156845437-156845545:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.8167724609375	2	543.829506	1085.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.281	1	23.281	22.781	23.781	0								0	0	0	0.2575	1	3400	3400		3.9444	0.3479	1		+		14863	20967	8386	8386	18816	18816					0.10506274057183873
ILLHSKWSF	9	Unmodified	_ILLHSKWSF_					0	0	0			REV__ENSG00000164256|ENST00000296682|PRDM9	REV__ENSG00000164256|ENST00000296682|PRDM9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.234619140625	2	565.821484	1129.62842	0.21073	0.00011924	0.30231	0.00017105	0.51304	0.00029029	565.8211320442693	39.348	0.49817	39.441	39.137	39.635	0.092674					32	17	3	0	0	0	0.24913	1	8231	8231		12.532	0.89125	1	273710	+		14864	17142	8387	8387	18817	18817					0.06878612610944401
ILLHSKWSF	9	Unmodified	_ILLHSKWSF_					0	0	0			REV__ENSG00000164256|ENST00000296682|PRDM9	REV__ENSG00000164256|ENST00000296682|PRDM9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.2348022460938	2	565.821484	1129.62842	0.30633	0.00017333	-0.80364	-0.00045472	-0.49731	-0.00028139	565.8211861150947	39.312	0.41362	39.411	39.236	39.65	0.099407					25	14	2	0	0	0	0.25526	1	8294	8294		7.9102	7.9102	1	331430	+		14865	17142	8387	8387	18818	18818					0.06878612610944401
ILLIPVDGSH	10	Unmodified	_ILLIPVDGSH_					0	0	0		ENSG00000241635|ENST00000305208|UGT1A1	ENSG00000241635|ENST00000305208|UGT1A1	ENSG00000241635|ENST00000305208|UGT1A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3111572265625	2	532.310949	1062.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.82	1	119.82	119.32	120.32	0								0	0	0	0.38126	1	30897	30897		1.6526	0	1				14866	8535	8388	8388	18819	18819					0.0785460251142922
ILLMSSWSL	9	Unmodified	_ILLMSSWSL_					0	0	0		ENSG00000189362|ENST00000409150|NEMP2	ENSG00000189362|ENST00000409150|NEMP2	ENSG00000189362|ENST00000409150|NEMP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2743530273438	2	525.288628	1048.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.584	1	69.65	69.15	70.15	0.066048								0	0	0	0.22377	1	17586	17586		14.838	0	1				14867	7814	8389	8389	18820	18820					0.04036455373739045
ILLVALVMFAW	11	Unmodified	_ILLVALVMFAW_					0	0	0		ENSG00000141574|ENST00000269389|SECTM1	ENSG00000141574|ENST00000269389|SECTM1	ENSG00000141574|ENST00000269389|SECTM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.8296508789062	2	638.38032	1274.74609	0.34777	0.00022201	1.617	0.0010323	1.9648	0.0012543	638.3815059569299	62.944	0.15859	62.944	62.881	63.039	0					8	5	2	0	0	0	0.3241	1	15568	15568		15.847	3.3156	1	105480			14868	4397	8390	8390	18821	18821					0.11970429155394413
ILLVALVMFAW	11	Unmodified	_ILLVALVMFAW_					0	0	0		ENSG00000141574|ENST00000269389|SECTM1	ENSG00000141574|ENST00000269389|SECTM1	ENSG00000141574|ENST00000269389|SECTM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	638.38032	1274.74609	0.58841	0.00037563	2.1997	0.0014042	2.7881	0.0017799	638.3812937034892	62.874	0.11087	62.97	62.931	63.042	0.095722	-0.0088178	0.00053426	NaN	15.847	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103370			14869	4397	8390	8390							0.11970429155394413
ILLVALVMFAW	11	Unmodified	_ILLVALVMFAW_					0	0	0		ENSG00000141574|ENST00000269389|SECTM1	ENSG00000141574|ENST00000269389|SECTM1	ENSG00000141574|ENST00000269389|SECTM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	638.38032	1274.74609	0.50234	0.00032068	2.0837	0.0013302	2.586	0.0016509	638.8833129505872	63.031	0.21921	63.023	62.832	63.051	-0.0085526	0.043637	0.00038614	NaN	15.847	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92270			14870	4397	8390	8390							0.11970429155394413
ILMLFVSCV	9	Unmodified	_ILMLFVSCV_					0	0	0			REV__ENSG00000115602|ENST00000233954|IL1RL1	REV__ENSG00000115602|ENST00000233954|IL1RL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2717895507812	2	512.782124	1023.5497	0.41853	0.00021462	1.0504	0.00053862	1.4689	0.00075324	512.7825363079756	43.345	0.44421	43.422	43.182	43.626	0.077515					23	15	2	0	0	0	0.21137	1	9552	9552		18.135	0	1	258970	+		14871	14887	8391	8391	18822	18822					0.03886300989984193
ILMRWSSRQS	10	Unmodified	_ILMRWSSRQS_					0	0	0			REV__nc|ENSG00000147475|O94905-3|ERLIN2	REV__nc|ENSG00000147475|O94905-3|ERLIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2564392089844	3	421.892401	1262.65538	-0.17353	-7.3212E-05	0.022502	9.4936E-06	-0.15103	-6.3718E-05	421.8925040550543	16.374	0.59771	16.374	16.035	16.632	0					45	20	3	0	0	0	0.31969	1	1219	1219		5.7834	5.7834	1	239600	+		14872	23025	8392	8392	18823	18823					0.03455353159824881
ILMVNRLFTA	10	Unmodified	_ILMVNRLFTA_					0	0	0			REV__ENSG00000180988|ENST00000317037|OR52N2	REV__ENSG00000180988|ENST00000317037|OR52N2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.342041015625	2	589.341726	1176.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.95	1	113.95	113.45	114.45	0								0	0	0	0.38166	1	29581	29581		1.4819	0.95714	1		+		14873	18128	8393	8393	18824	18824					0.08763210939082455
ILNEHNIG	8	Unmodified	_ILNEHNIG_					0	0	0			REV__nc|ENSG00000171587|O60469-2|DSCAM	REV__nc|ENSG00000171587|O60469-2|DSCAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2426452636719	2	455.243067	908.47158	-0.18556	-8.4474E-05	-1.3943	-0.00063473	-1.5798	-0.0007192	455.242332639218	14.37	0.51818	14.304	14.07	14.588	-0.066068					43	18	3	0	0	0	0.45431	1	775	775		4.3292	0	1	447620	+		14874	17654	8394	8394	18825	18825					0.013683277206041566
ILNFDEYAL	9	Unmodified	_ILNFDEYAL_					0	0	0		nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3;FHOD3|p.S1039Lfs*29|1|0.07|ENSG00000134775|chr18:36740769-36740770|-/CTTCAATGTTATAAAATTCATATTATAATTT|frameshift_variant	nc|ENSG00000134775|Q2V2M9-2|FHOD3	nc|ENSG00000134775|Q2V2M9-2|FHOD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7594604492188	2	549.279315	1096.54408	0.7747	0.00042552	-1.9061	-0.001047	-1.1314	-0.00062144	549.2793142584244	78.271	0.43922	78.329	78.115	78.554	0.058151					27	15	2	0	0	0	0.26612	1	20293	20293		13.906	1.6654	1	219510			14875	3812	8395	8395	18826	18826					-0.00033382996502950846
ILNFGGIF	8	Unmodified	_ILNFGGIF_					0	0	0		ENST00000478753.4_3_16:30455432-30455570:-|nuORF	ENST00000478753.4_3_16:30455432-30455570:-|nuORF	ENST00000478753.4_3_16:30455432-30455570:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.26171875	2	440.749996	879.485439	0.17897	7.8883E-05	0.0077754	3.427E-06	0.18675	8.231E-05	440.74987853856004	62.347	2.2983	62.347	61.727	64.026	0					227	84	4	0	0	0	0.42446	1	15757	15757		14.582	0	1	2387400			14876	10979	8396	8396	18827	18827					0.04087605219717716
ILNHQVFLF	9	Unmodified	_ILNHQVFLF_					0	0	0			REV__ENSG00000166897|ENST00000402918|ELFN2	REV__ENSG00000166897|ENST00000402918|ELFN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.2347412109375	2	565.821484	1129.62842	-0.0846	-4.7868E-05	-0.27749	-0.00015701	-0.36209	-0.00020488	565.8213729692444	39.389	0.47986	39.389	39.215	39.695	0					30	17	2	0	0	0	0.25417	1	8274	8274		8.5933	0.68312	1	344020	+		14877	17346	8397	8397	18828	18828					0.06878612610921664
ILNHVDVLF	9	Unmodified	_ILNHVDVLF_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;ENST00000534357.1_1_11:128850446-128851410:-|nuORF	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.83984375	2	535.305667	1068.59678	0.37594	0.00020124	-1.2352	-0.00066121	-0.85927	-0.00045997	535.8058173787375	75.421	0.37634	75.473	75.131	75.508	0.052368					18	13	2	0	0	0	0.24542	1	19271	19271		14.582	1.0738	1	60167			14878	3829	8398	8398	18829	18829					0.06522619856968959
ILNKPLQL	8	Unmodified	_ILNKPLQL_					0	0	0		ENST00000474427.6_1_6:134492115-134492442:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1	ENST00000474427.6_1_6:134492115-134492442:-|nuORF	ENST00000474427.6_1_6:134492115-134492442:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7528076171875	2	469.805303	937.596052	0.32568	0.00015301	-0.16977	-7.9757E-05	0.15591	7.325E-05	469.80506195546883	47.297	0.42014	47.297	47.187	47.608	0					25	14	2	0	0	0	0.26527	1	10772	10772		44.407	4.4497	1	319570			14879	2833	8399	8399	18830	18830					0.12475825207945945
ILNKPLQL	8	Unmodified	_ILNKPLQL_					0	0	0		ENST00000474427.6_1_6:134492115-134492442:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1	ENST00000474427.6_1_6:134492115-134492442:-|nuORF	ENST00000474427.6_1_6:134492115-134492442:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.75274658203125	2	469.805303	937.596052	0.15785	7.4159E-05	-0.019514	-9.1678E-06	0.13834	6.4992E-05	469.8051937617794	47.315	0.50865	47.368	47.142	47.651	0.052574					30	18	2	0	0	0	0.26527	1	10750	10750		44.407	10.305	1	374800			14880	2833	8399	8399	18831	18831					0.12475825207945945
ILNKPLQL	8	Unmodified	_ILNKPLQL_					0	0	0		ENST00000474427.6_1_6:134492115-134492442:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1	ENST00000474427.6_1_6:134492115-134492442:-|nuORF	ENST00000474427.6_1_6:134492115-134492442:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7527160644531	2	469.805303	937.596052	0.77855	0.00036577	-0.793	-0.00037256	-0.01445	-6.7885E-06	469.8049077022965	47.313	0.50526	47.367	47.168	47.673	0.054375					34	18	2	0	0	0	0.26527	1	10745	10745		44.407	10.305	1	415200			14881	2833	8399	8399	18832	18832					0.12475825207945945
ILNNIKGHTKQ	11	Unmodified	_ILNNIKGHTKQ_					0	0	0			REV__ENSG00000165953|ENST00000677451|SERPINA12	REV__ENSG00000165953|ENST00000677451|SERPINA12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8901977539062	2	633.369861	1264.72517	-0.059846	-3.7904E-05	1.0073	0.00063802	0.9475	0.00060012	633.3700924003698	104.67	0.2907	104.67	104.51	104.8	0					66	40	2	0	0	0	0.45605	1	27766	27766		3.8763	0.88109	1	91032	+		14882	17282	8400	8400	18833	18833					0.1033955510006308
ILNNIKGHTKQ	11	Unmodified	_ILNNIKGHTKQ_					0	0	0			REV__ENSG00000165953|ENST00000677451|SERPINA12	REV__ENSG00000165953|ENST00000677451|SERPINA12	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	633.369861	1264.72517	0.41476	0.0002627	-0.23239	-0.00014719	0.18237	0.00011551	633.3689211210522	104.76	0.10362	104.76	104.72	104.82	0.0011444	0.042844	-0.0012265	NaN	3.8763	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98648	+		14883	17282	8400	8400							0.1033955510006308
ILNQQEVI	8	Unmodified	_ILNQQEVI_					0	0	0			REV__nc|ENSG00000188385|Q5VZ66|JAKMIP3	REV__nc|ENSG00000188385|Q5VZ66|JAKMIP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.29766845703125	2	478.7742	955.533846	0.23798	0.00011394	-0.13641	-6.5311E-05	0.10156	4.8626E-05	478.77401600948224	63.368	0.46974	63.368	63.195	63.665	0					22	16	2	0	0	0	0.34092	1	15643	15643		13.508	0	1	196360	+		14884	18552	8401	8401	18834	18834					0.054300540689382615
ILNTFYPKF	9	Unmodified	_ILNTFYPKF_					0	0	0		ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.8156127929688	2	571.815867	1141.61718	0.4702	0.00026887	-0.094107	-5.3812E-05	0.37609	0.00021505	571.8157349690692	64.401	0.98039	64.401	63.826	64.807	0					88	35	3	0	0	0	0.00033489	1	15979	15979		140.63	90.7	1	4229700			14885	3443	8402	8402	18835	18835					0.052037905167935605
ILNTFYPKF	9	Unmodified	_ILNTFYPKF_					0	0	0		ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.8155517578125	2	571.815867	1141.61718	0.51922	0.0002969	-0.2001	-0.00011442	0.31912	0.00018248	571.8157014187743	64.302	1.0035	64.395	63.794	64.798	0.09288					116	36	4	0	0	0	0.0015055	1	15941	15941		106.94	61.241	1	4134300			14886	3443	8402	8402	18836	18836					0.052037905167935605
ILNTFYPKF	9	Unmodified	_ILNTFYPKF_					0	0	0		ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	ENSG00000129988|ENST00000217407|LBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.8157348632812	2	571.815867	1141.61718	0.44277	0.00025319	-0.17529	-0.00010023	0.26749	0.00015295	571.8157366409204	64.422	0.87137	64.412	63.91	64.781	-0.0095291					101	31	4	0	0	0	0.0056456	1	15979	15979		93.166	54.99	1	4007800			14887	3443	8402	8402	18837	18837					0.052037905167935605
ILPCIVLTF	9	Unmodified	_ILPCIVLTF_					0	0	0			REV__ENSG00000004700|ENST00000444129|RECQL	REV__ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8038024902344	2	509.803914	1017.59328	0.22616	0.0001153	-0.035551	-1.8124E-05	0.19061	9.7175E-05	509.80383599795044	76.259	3.0687	76.313	75.455	78.523	0.053421					204	110	4	0	0	0	0.32733	1	20050	20050		4.756	4.756	1	8134600	+		14888	13333	8403	8403	18838	18838					0.08518233758752558
ILPFTMPAF	9	Oxidation (M)	_ILPFTM(Oxidation (M))PAF_		ILPFTM(1)PAF		ILPFTM(51)PAF	0	0	1		nc|ENSG00000255561|Q9BRP7-2|FDXACB1;ENSG00000255561|ENST00000260257|FDXACB1	nc|ENSG00000255561|Q9BRP7-2|FDXACB1	nc|ENSG00000255561|Q9BRP7-2|FDXACB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.8214111328125	2	526.777896	1051.54124	0.48779	0.00025696	3.3823	0.0017817	3.8701	0.0020387	527.2828421596756	80.303	0.75798	80.303	79.872	80.63	0					46	27	2	0	0	0	0.10111	1	20930	20930		50.855	26.181	1	221340			14889	8619	8404	8404	18839	18839		919			0.0175307034501202
ILPFTMPAF	9	Oxidation (M)	_ILPFTM(Oxidation (M))PAF_		ILPFTM(1)PAF		ILPFTM(60)PAF	0	0	1		nc|ENSG00000255561|Q9BRP7-2|FDXACB1;ENSG00000255561|ENST00000260257|FDXACB1	nc|ENSG00000255561|Q9BRP7-2|FDXACB1	nc|ENSG00000255561|Q9BRP7-2|FDXACB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7778930664062	2	526.777896	1051.54124	0.38805	0.00020442	3.6509	0.0019232	4.0389	0.0021276	526.7777261644657	80.218	0.92945	80.283	79.699	80.628	0.065094					58	34	3	0	0	0	0.029841	1	20860	20860		60.39	31.903	1	180160			14890	8619	8404	8404	18840	18840		919			0.0175307034501202
ILPGQVSK	8	Unmodified	_ILPGQVSK_					0	0	0		ENST00000256383.8_1_14:67852335-67852467:+|nuORF	ENST00000256383.8_1_14:67852335-67852467:+|nuORF	ENST00000256383.8_1_14:67852335-67852467:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.7512512207031	2	421.260728	840.506903	0.010974	4.6227E-06	-3.1996	-0.0013479	-3.1886	-0.0013432	421.25946204431625	80.016	1.1232	80.078	79.394	80.517	0.061409					55	42	2	0	0	0	0.34353	1	20691	20691		4.756	0	1	204940			14891	8928	8405	8405	18841	18841					0.08026990248424681
ILPGSLFRF	9	Unmodified	_ILPGSLFRF_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.310791015625	2	525.310752	1048.60695	0.40027	0.00021026	-0.65761	-0.00034545	-0.25734	-0.00013518	525.3102302219638	73.391	1.6992	73.391	72.586	74.286	0					174	59	4	0	0	0	0.0042138	2	18719	18667;18719		92.653	36.476	1	3253900			14892	3981	8406	8406	18842;18843	18843					0.08459227582216045
ILPGSLFRF	9	Unmodified	_ILPGSLFRF_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.309814453125	2	525.310752	1048.60695	0.3683	0.00019347	-0.6189	-0.00032512	-0.2506	-0.00013164	525.3102955760825	73.313	2.134	73.367	72.57	74.704	0.053833					205	75	4	0	0	0	0.012386	3	18640	18633;18640;18687		75.761	29.858	1	3426900			14893	3981	8406	8406	18844;18845;18846	18845					0.08459227582216045
ILPGSLFRF	9	Unmodified	_ILPGSLFRF_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.310791015625	2	525.310752	1048.60695	0.52198	0.0002742	-0.74637	-0.00039208	-0.22439	-0.00011787	525.3101953613317	73.404	2.4127	73.375	72.594	75.007	-0.029305					214	86	4	0	0	0	0.0042138	4	18710	18657;18664;18710;18954		92.653	44.905	1	3600300			14894	3981	8406	8406	18847;18848;18849;18850	18849					0.08459227582216045
ILPGVLIL	8	Unmodified	_ILPGVLIL_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.29388427734375	2	419.29404	836.573526	-0.063595	-2.6665E-05	-0.08186	-3.4324E-05	-0.14546	-6.0989E-05	419.2938985930745	91.793	1.0918	91.793	91.251	92.342	0					195	77	3	0	0	0	0.1467	2	24351	24351;24392		52.334	10.517	1	1399600			14895	719	8407	8407	18851;18852	18851					0.14870225810318516
ILPGVLIL	8	Unmodified	_ILPGVLIL_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.29388427734375	2	419.29404	836.573526	0.11169	4.6829E-05	-0.3163	-0.00013262	-0.20461	-8.5792E-05	419.29381596096187	91.61	1.2871	91.701	91.179	92.466	0.090668					220	90	3	0	0	0	0.1467	2	24313	24313;24357		52.334	10.517	1	1649600			14896	719	8407	8407	18853;18854	18853					0.14870225810318516
ILPGVLIL	8	Unmodified	_ILPGVLIL_					0	0	0		nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.2938537597656	2	419.29404	836.573526	0.27554	0.00011553	-0.41945	-0.00017587	-0.14391	-6.034E-05	419.29374149942333	91.751	1.3036	91.751	91.205	92.509	0.00046539					197	87	4	0	0	0	0.079765	2	24387	24340;24387		64.081	22.264	1	1590600			14897	719	8407	8407	18855;18856	18856					0.14870225810318516
ILPGVVTSP	9	Unmodified	_ILPGVVTSP_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.76806640625	2	441.768386	881.522219	-0.074926	-3.31E-05	-0.19397	-8.5688E-05	-0.26889	-0.00011879	441.7680973684311	96.114	0.78732	96.114	95.821	96.608	0					145	75	3	0	0	0	0.30623	1	25675	25675		7.9102	0	1	410200			14898	7030	8408	8408	18857	18857					0.07671857045602337
ILPGVVTSP	9	Unmodified	_ILPGVVTSP_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.76812744140625	2	441.768386	881.522219	-0.0059567	-2.6315E-06	-0.25169	-0.00011119	-0.25765	-0.00011382	441.76807168123884	96.012	0.68619	96.09	95.817	96.503	0.077408					139	61	3	0	0	0	0.32733	3	25627	25627;25704;25715		4.756	0	1	932960			14899	7030	8408	8408	18858;18859;18860	18858					0.07671857045602337
ILPGVVTSP	9	Unmodified	_ILPGVVTSP_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7680358886719	2	441.768386	881.522219	0.23425	0.00010348	-0.52326	-0.00023116	-0.28901	-0.00012768	441.76796550975104	96.151	0.78042	96.147	95.829	96.61	-0.0038147					172	74	3	0	0	0	0.32733	3	25666	25666;25704;25743		4.756	0	1	1022300			14900	7030	8408	8408	18861;18862;18863	18861					0.07671857045602337
ILPIKSPKV	9	Unmodified	_ILPIKSPKV_					0	0	0		ENST00000283635.7_2_2:87016528-87018429:-|nuORF	ENST00000283635.7_2_2:87016528-87018429:-|nuORF	ENST00000283635.7_2_2:87016528-87018429:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2920227050781	2	497.836603	993.658653	0.59425	0.00029584	0.074467	3.7073E-05	0.66872	0.00033291	497.83650751159826	66.224	0.4689	66.224	65.955	66.423	0					27	16	2	0	0	0	0.22061	1	16579	16579		24.021	5.8742	1	239990			14901	9134	8409	8409	18864	18864					0.16156971276120657
ILPIKSPKV	9	Unmodified	_ILPIKSPKV_					0	0	0		ENST00000283635.7_2_2:87016528-87018429:-|nuORF	ENST00000283635.7_2_2:87016528-87018429:-|nuORF	ENST00000283635.7_2_2:87016528-87018429:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.29217529296875	2	497.836603	993.658653	0.40112	0.00019969	-0.15843	-7.8874E-05	0.24268	0.00012082	497.8364213105267	66.237	0.51402	66.223	65.919	66.433	-0.013588					29	18	2	0	0	0	0.24289	1	16556	16556		18.146	3.3081	1	141430			14902	9134	8409	8409	18865	18865					0.16156971276120657
ILPKMPDF	8	Unmodified	_ILPKMPDF_					0	0	0		ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2516174316406	2	480.764789	959.515025	-0.13522	-6.501E-05	-1.1212	-0.00053902	-1.2564	-0.00060403	480.76426264565094	13.728	0.39536	13.728	13.597	13.992	0					31	13	3	0	0	0	0.44389	1	531	531		7.9102	1.187	1	89033			14903	3495	8410	8410	18866	18866					0.033648011735408545
ILPKMPDF	8	Unmodified	_ILPKMPDF_					0	0	0		ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2519836425781	2	480.764789	959.515025	-0.13191	-6.3416E-05	-1.1487	-0.00055223	-1.2806	-0.00061565	480.7642700884373	13.806	0.45474	13.701	13.568	14.023	-0.10466					41	15	4	0	0	0	0.44389	1	566	566		7.9102	7.9102	1	96844			14904	3495	8410	8410	18867	18867					0.033648011735408545
ILPKMPDF	8	Unmodified	_ILPKMPDF_					0	0	0		ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.251708984375	2	480.764789	959.515025	-0.094091	-4.5236E-05	-0.8851	-0.00042553	-0.97919	-0.00047076	480.764329830906	13.8	0.40497	13.734	13.632	14.037	-0.066068					32	13	4	0	0	0	0.43043	1	567	567		12.532	12.532	1	107570			14905	3495	8410	8410	18868	18868					0.033648011735408545
ILPKMPDF	8	Unmodified	_ILPKMPDF_					0	0	0		ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	480.764789	959.515025	-0.13522	-6.501E-05	-1.1212	-0.00053902	-1.2564	-0.00060403	480.76426264565094	13.728	0.39536	13.728	13.597	13.992	0	0.0067567	-4.9433E-05	NaN	12.532	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89033			14906	3495	8410	8410							0.033648011735408545
ILPKMPDF	8	Unmodified	_ILPKMPDF_					0	0	0		ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	480.764789	959.515025	-0.13191	-6.3416E-05	-1.1487	-0.00055223	-1.2806	-0.00061565	480.7642700884373	13.806	0.45474	13.701	13.568	14.023	-0.10466	-0.01993	-7.5855E-05	NaN	12.532	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96844			14907	3495	8410	8410							0.033648011735408545
ILPKMPDF	8	Unmodified	_ILPKMPDF_					0	0	0		ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	480.764789	959.515025	-0.094091	-4.5236E-05	-0.8851	-0.00042553	-0.97919	-0.00047076	480.764329830906	13.8	0.40497	13.734	13.632	14.037	-0.066068	0.013174	0.00017755	NaN	12.532	32	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107570			14908	3495	8410	8410							0.033648011735408545
ILPKVIYRF	9	Unmodified	_ILPKVIYRF_					0	0	0		L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense;nc|ENSG999|O00370|L1_ORF2;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|9|1|sense;L1PA3_dup8093|chr11:58696286-58700694:-|8.889446604907338|0.3518458624306171|4.66|529.0|119|3|sense;L1PA3_dup1464|chr2:208773458-208776294:+|1.730898577886428|0.207304446788351|3.06|523.0|35|2|sense;L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|109|2|sense;L1PA4_dup1160|chr2:91782775-91784994:+|2.5253371533198647|0.3095922205464006|3.03|525.0|62|3|sense;L1PA3_dup6831|chrX:106827828-106830948:+|1.112501382732906|0.4076652707632567|1.45|539.0|16|1|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3114624023438	2	574.863152	1147.71175	0.46433	0.00026693	0.004426	2.5443E-06	0.46876	0.00026947	574.863041435795	53.882	0.54039	53.882	53.622	54.162	0					43	19	3	0	0	0	0.2322	1	12732	12732		20.454	3.5113	1	440920			14909	12439	8411	8411	18869	18869					0.14380349058797037
ILPKVIYRF	9	Unmodified	_ILPKVIYRF_					0	0	0		L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense;nc|ENSG999|O00370|L1_ORF2;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|9|1|sense;L1PA3_dup8093|chr11:58696286-58700694:-|8.889446604907338|0.3518458624306171|4.66|529.0|119|3|sense;L1PA3_dup1464|chr2:208773458-208776294:+|1.730898577886428|0.207304446788351|3.06|523.0|35|2|sense;L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|109|2|sense;L1PA4_dup1160|chr2:91782775-91784994:+|2.5253371533198647|0.3095922205464006|3.03|525.0|62|3|sense;L1PA3_dup6831|chrX:106827828-106830948:+|1.112501382732906|0.4076652707632567|1.45|539.0|16|1|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3115844726562	2	574.863152	1147.71175	0.28975	0.00016657	0.12057	6.9311E-05	0.41032	0.00023588	574.8631352376672	53.769	0.52464	53.826	53.611	54.136	0.056255					44	19	3	0	0	0	0.14961	1	12749	12749		41.84	20.093	1	465220			14910	12439	8411	8411	18870	18870					0.14380349058797037
ILPKVIYRF	9	Unmodified	_ILPKVIYRF_					0	0	0		L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense;nc|ENSG999|O00370|L1_ORF2;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|9|1|sense;L1PA3_dup8093|chr11:58696286-58700694:-|8.889446604907338|0.3518458624306171|4.66|529.0|119|3|sense;L1PA3_dup1464|chr2:208773458-208776294:+|1.730898577886428|0.207304446788351|3.06|523.0|35|2|sense;L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|109|2|sense;L1PA4_dup1160|chr2:91782775-91784994:+|2.5253371533198647|0.3095922205464006|3.03|525.0|62|3|sense;L1PA3_dup6831|chrX:106827828-106830948:+|1.112501382732906|0.4076652707632567|1.45|539.0|16|1|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3115844726562	2	574.863152	1147.71175	0.37948	0.00021815	0.27477	0.00015795	0.65425	0.0003761	574.8631348072464	54.017	0.57375	54.001	53.787	54.361	-0.015923					41	20	3	0	0	0	0.17242	1	12799	12799		36.127	9.2434	1	448000			14911	12439	8411	8411	18871	18871					0.14380349058797037
ILPKYVQQV	9	Unmodified	_ILPKYVQQV_					0	0	0		ENST00000533105.1_1_11:47600795-47602306:+|nuORF;nc|ENSG00000213619|O75489-2|NDUFS3;ENSG00000213619|ENST00000263774|NDUFS3	ENST00000533105.1_1_11:47600795-47602306:+|nuORF	ENST00000533105.1_1_11:47600795-47602306:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.82080078125	2	544.329142	1086.64373	0.70016	0.00038112	0.028843	1.57E-05	0.729	0.00039682	544.329061904331	65.556	0.4892	65.545	65.372	65.861	-0.011337					25	17	3	0	0	0	0.1659	1	16417	16417		36.044	12.896	1	232880			14912	8356	8412	8412	18872	18872					0.10387479408132094
ILPNAQLVF	9	Unmodified	_ILPNAQLVF_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.8027648925781	2	507.80276	1013.59097	0.23105	0.00011733	-0.36884	-0.0001873	-0.13778	-6.9968E-05	507.8025876019003	75.419	1.1503	75.419	75.043	76.193	0					113	41	4	0	0	0	0.0046213	3	19341	19341;19385;19437		89.427	29.037	1	2668400			14913	5280	8413	8413	18873;18874;18875	18873					0.08471521345325073
ILPNAQLVF	9	Unmodified	_ILPNAQLVF_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.802734375	2	507.80276	1013.59097	0.31857	0.00016177	-0.36873	-0.00018724	-0.050152	-2.5467E-05	507.8025684098443	75.333	1.1356	75.386	75.024	76.16	0.052368					119	41	4	0	0	0	0.0046213	3	19307	19307;19355;19403		89.427	22.083	1	2561100			14914	5280	8413	8413	18876;18877;18878	18876					0.08471521345325073
ILPNAQLVF	9	Unmodified	_ILPNAQLVF_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.80276	1013.59097	0.42239	0.00021449	-0.54945	-0.00027901	-0.12706	-6.4519E-05	507.8024884716421	75.465	1.1563	75.433	75.059	76.216	-0.031487	0.020697	-0.00012025	NaN	89.427	116	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2431600			14915	5280	8413	8413							0.08471521345325073
ILPPQLALF	9	Unmodified	_ILPPQLALF_					0	0	0		ENSG00000106546|ENST00000242057|AHR;AHR|p.Q667Pfs*7|1|0.3|ENSG00000106546|chr7:17339823-17339824|-/C|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3154602050781	2	506.315503	1010.61645	0.42575	0.00021557	-0.074201	-3.7569E-05	0.35155	0.000178	506.31530740726197	89.12	1.7581	89.12	88.584	90.342	0					224	110	3	0	0	0	0.0061338	5	23526	23480;23526;23572;23619;23664		85.357	67.344	1	1004100			14916	2082	8414	8414	18879;18880;18881;18882;18883	18880					0.1115699586774781
ILPPQLALF	9	Unmodified	_ILPPQLALF_					0	0	0		ENSG00000106546|ENST00000242057|AHR;AHR|p.Q667Pfs*7|1|0.3|ENSG00000106546|chr7:17339823-17339824|-/C|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.3155822753906	2	506.315503	1010.61645	0.39794	0.00020148	0.027447	1.3897E-05	0.42538	0.00021538	506.31532971660295	89.008	1.6225	89.007	88.562	90.184	-0.00080872					209	101	4	0	0	0	0.0061338	5	23506	23460;23506;23553;23595;23640		85.357	55.132	1	1057300			14917	2082	8414	8414	18884;18885;18886;18887;18888	18885					0.1115699586774781
ILPPTSYIF	9	Unmodified	_ILPPTSYIF_					0	0	0		ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7975463867188	2	525.797143	1049.57973	0.4885	0.00025685	-0.10059	-5.2892E-05	0.3879	0.00020396	525.7972113013308	80.665	0.90833	80.665	80.322	81.23	0					89	40	3	0	0	0	0.017871	3	20989	20939;20989;21038		67.344	31.3	1	402140			14918	10910	8415	8415	18889;18890;18891	18890					0.05692699251153499
ILPPTSYIF	9	Unmodified	_ILPPTSYIF_					0	0	0		ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7969360351562	2	525.797143	1049.57973	0.30631	0.00016106	0.080173	4.2155E-05	0.38649	0.00020321	525.7973700770295	80.588	0.78757	80.653	80.346	81.133	0.065102					79	32	3	0	0	0	0.029841	3	20923	20923;20981;21029		60.39	30.165	1	499300			14919	10910	8415	8415	18892;18893;18894	18892					0.05692699251153499
ILPPTSYIF	9	Unmodified	_ILPPTSYIF_					0	0	0		ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	ENST00000473764.5_1_X:48755552-48755627:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7972412109375	2	525.797143	1049.57973	0.51087	0.00026861	0.10176	5.3507E-05	0.61263	0.00032212	525.7972785047237	80.728	1.1953	80.701	80.32	81.515	-0.026817					80	48	3	0	0	0	0.010938	3	20993	20943;20993;21052		77.984	33.577	1	556450			14920	10910	8415	8415	18895;18896;18897	18896					0.05692699251153499
ILPQVQELL	9	Unmodified	_ILPQVQELL_					0	0	0			REV__ENST00000477167.5_1_1:20991079-21011627:-|nuORF	REV__ENST00000477167.5_1_1:20991079-21011627:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8209838867188	2	526.82115	1051.62775	0.50575	0.00026644	-0.37596	-0.00019806	0.12979	6.8377E-05	526.821024863722	80.602	0.60729	80.575	80.294	80.901	-0.026825					36	22	2	0	0	0	0.1669	1	20933	20933		28.487	3.0875	1	410990	+		14921	14961	8416	8416	18898	18898					0.10399773171252491
ILPQVQELL	9	Unmodified	_ILPQVQELL_					0	0	0			REV__ENST00000477167.5_1_1:20991079-21011627:-|nuORF	REV__ENST00000477167.5_1_1:20991079-21011627:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	526.82115	1051.62775	0.50575	0.00026644	-0.37596	-0.00019806	0.12979	6.8377E-05	526.821024863722	80.602	0.60729	80.575	80.294	80.901	-0.026825	0.028448	-0.00054444	NaN	28.487	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	410990	+		14922	14961	8416	8416							0.10399773171252491
ILPSRHLL	8	Unmodified	_ILPSRHLL_					0	0	0		ENST00000491491.1_1_13:77900653-77900983:-|nuORF	ENST00000491491.1_1_13:77900653-77900983:-|nuORF	ENST00000491491.1_1_13:77900653-77900983:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.80255126953125	2	474.803094	947.591636	0.25384	0.00012053	-0.52462	-0.00024909	-0.27077	-0.00012856	474.80276988260175	47.27	0.63594	47.322	47.114	47.75	0.052574					53	23	3	0	0	0	0.3474	1	10754	10754		25.399	0	1	729540			14923	11181	8417	8417	18899	18899					0.11574360785039062
ILPSTTLTF	9	Unmodified	_ILPSTTLTF_					0	0	0		ENST00000519683.1_1_5:153830726-153830774:+|nuORF	ENST00000519683.1_1_5:153830726-153830774:+|nuORF	ENST00000519683.1_1_5:153830726-153830774:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.30413818359375	2	496.786776	991.558998	0.46419	0.00023061	-0.0047791	-2.3742E-06	0.45942	0.00022823	496.786860920365	71.887	1.1243	71.887	71.462	72.586	0					74	40	3	0	0	0	0.0082143	1	18305	18305		88.904	46.809	1	283660			14924	11463	8418	8418	18900	18900					0.06288108871513032
ILPSTTLTF	9	Unmodified	_ILPSTTLTF_					0	0	0		ENST00000519683.1_1_5:153830726-153830774:+|nuORF	ENST00000519683.1_1_5:153830726-153830774:+|nuORF	ENST00000519683.1_1_5:153830726-153830774:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3041687011719	2	496.786776	991.558998	0.4713	0.00023414	0.042267	2.0998E-05	0.51357	0.00025513	496.7867854326226	71.82	0.97511	71.876	71.537	72.513	0.056572					72	35	3	0	0	0	0.0082143	1	18266	18266		78.149	47.513	1	349630			14925	11463	8418	8418	18901	18901					0.06288108871513032
ILPSTTLTF	9	Unmodified	_ILPSTTLTF_					0	0	0		ENST00000519683.1_1_5:153830726-153830774:+|nuORF	ENST00000519683.1_1_5:153830726-153830774:+|nuORF	ENST00000519683.1_1_5:153830726-153830774:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3038024902344	2	496.786776	991.558998	0.44839	0.00022276	-0.051165	-2.5418E-05	0.39723	0.00019734	496.7867908172684	71.862	0.97382	71.835	71.57	72.544	-0.027275					52	34	2	0	0	0	0.11486	1	18234	18234		48.346	18.121	1	313840			14926	11463	8418	8418	18902	18902					0.06288108871513032
ILPTFMLLF	9	Unmodified	_ILPTFMLLF_					0	0	0			REV__ENST00000566239.1_1_15:65822954-65844187:+|nuORF	REV__ENST00000566239.1_1_15:65822954-65844187:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8341674804688	2	547.819564	1093.62458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.894	1	68.875	68.375	69.375	-0.019157								0	0	0	0.22457	1	17369	17369		14.582	0	1		+		14927	22366	8419	8419	18903	18903					0.08150806792855292
ILPTVPAL	8	Unmodified	_ILPTVPAL_					0	0	0		ENSG00000143390|ENST00000452671|RFX5;nc|ENSG00000143390|P48382-2|RFX5	ENSG00000143390|ENST00000452671|RFX5	ENSG00000143390|ENST00000452671|RFX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2679443359375	2	412.268022	822.521491	-0.016475	-6.7922E-06	0.11619	4.79E-05	0.099712	4.1108E-05	412.26790370457036	71.045	0.89892	71.045	70.683	71.582	0					84	31	4	0	0	0	0.018305	1	17984	17984		104.31	8.1916	1	3960300			14928	4511	8420	8420	18904	18904					0.103130623965626
ILPTYLPF	8	Unmodified	_ILPTYLPF_					0	0	0		ENST00000232496.4_1_3:50362844-50363069:-|nuORF	ENST00000232496.4_1_3:50362844-50363069:-|nuORF	ENST00000232496.4_1_3:50362844-50363069:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.3030090332031	2	482.281129	962.547705	0.72074	0.0003476	-3.758	-0.0018124	-3.0373	-0.0014648	482.27934494465643	50.667	0.46754	50.711	50.403	50.871	0.044888					25	16	2	0	0	0	0.33618	1	11775	11775		11.114	0	1	206420			14929	8864	8421	8421	18905	18905					0.06493331568049143
ILPVRPLRF	9	Unmodified	_ILPVRPLRF_					0	0	0		nc|ENSG00000133619|A5PL33-3|KRBA1;nc|ENSG00000133619|A5PL33-2|KRBA1;nc|ENSG00000133619|A5PL33|KRBA1;ENSG00000133619|ENST00000496259|KRBA1;ENST00000489951.1_1_7:149427187-149427675:+|nuORF	nc|ENSG00000133619|A5PL33-3|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.861572265625	2	555.860944	1109.70733	0.33486	0.00018614	0.12524	6.9616E-05	0.4601	0.00025575	555.8611155310205	51.664	0.52798	51.711	51.528	52.056	0.046577					41	18	3	0	0	0	0.088391	1	12078	12078		39.957	9.7325	1	469200			14930	3718	8422	8422	18906	18906					0.15686884635897513
ILPVRPLRF	9	Unmodified	_ILPVRPLRF_					0	0	0		nc|ENSG00000133619|A5PL33-3|KRBA1;nc|ENSG00000133619|A5PL33-2|KRBA1;nc|ENSG00000133619|A5PL33|KRBA1;ENSG00000133619|ENST00000496259|KRBA1;ENST00000489951.1_1_7:149427187-149427675:+|nuORF	nc|ENSG00000133619|A5PL33-3|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8613891601562	2	555.860944	1109.70733	0.12467	6.9297E-05	0.093995	5.2248E-05	0.21866	0.00012155	555.8610025036049	51.751	0.56684	51.761	51.612	52.179	0.0095634					42	20	3	0	0	0	0.14076	1	12088	12088		32.305	3.8186	1	738990			14931	3718	8422	8422	18907	18907					0.15686884635897513
ILPVRPLRF	9	Unmodified	_ILPVRPLRF_					0	0	0		nc|ENSG00000133619|A5PL33-3|KRBA1;nc|ENSG00000133619|A5PL33-2|KRBA1;nc|ENSG00000133619|A5PL33|KRBA1;ENSG00000133619|ENST00000496259|KRBA1;ENST00000489951.1_1_7:149427187-149427675:+|nuORF	nc|ENSG00000133619|A5PL33-3|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	555.860944	1109.70733	0.33249	0.00018482	0.074947	4.166E-05	0.40743	0.00022648	555.8610324202759	51.667	0.5415	51.667	51.508	52.049	0	-0.046205	-2.2046E-05	NaN	39.957	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	676260			14932	3718	8422	8422							0.15686884635897513
ILQEAVKPV	9	Unmodified	_ILQEAVKPV_					0	0	0			REV__ENST00000524877.5_1_11:61726936-61727579:+|nuORF	REV__ENST00000524877.5_1_11:61726936-61727579:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3240051269531	2	498.808042	995.601532	0.59834	0.00029846	-0.71288	-0.00035559	-0.11453	-5.7131E-05	498.8077200988138	56.65	0.42129	56.729	56.513	56.935	0.078671					24	15	2	0	0	0	0.16283	1	13646	13646		29.082	0	1	279720	+		14933	21944	8423	8423	18908	18908					0.1035550399975591
ILQIKAVE	8	Unmodified	_ILQIKAVE_					0	0	0		nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1639209-1640976:+|nuORF	nc|ENSG00000167716|Q562E7-2|WDR81	nc|ENSG00000167716|Q562E7-2|WDR81	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7767028808594	2	457.289485	912.564418	0.39615	0.00018115	-0.1565	-7.1564E-05	0.23965	0.00010959	457.28948568373096	55.071	0.58657	55.139	54.945	55.532	0.067646					36	21	2	0	0	0	0.43727	1	13236	13236		10.183	0	1	742900			14934	6205	8424	8424	18909	18909					0.10463832453990562
ILQIKCFLN	9	Unmodified	_ILQIKCFLN_					0	0	0		CLCN7|p.P207L|1|0.34|ENSG00000103249|chr16:1459162-1459162|G/A|missense_variant	CLCN7|p.P207L|1|0.34|ENSG00000103249|chr16:1459162-1459162|G/A|missense_variant	CLCN7|p.P207L|1|0.34|ENSG00000103249|chr16:1459162-1459162|G/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.3322143554688	2	546.31772	1090.62089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.432	1	42.432	41.932	42.932	0								0	0	0	0.21357	1	9234	9234		18.135	1.0221	1				14935	185	8425	8425	18910	18910					0.07920137019027607
ILQKANLLS	9	Unmodified	_ILQKANLLS_					0	0	0		nc|ENSG00000138386|Q13506-2|NAB1;ENSG00000138386|ENST00000337386|NAB1	nc|ENSG00000138386|Q13506-2|NAB1	nc|ENSG00000138386|Q13506-2|NAB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.8238525390625	2	500.313492	998.612431	0.013251	6.6298E-06	0.62694	0.00031366	0.64019	0.00032029	500.31371730146714	65.384	0.54094	65.473	65.243	65.784	0.088882					30	19	2	0	0	0	0.1854	1	16274	16274		32.305	9.5692	1	520460			14936	4146	8426	8426	18911	18911					0.11306906374034043
ILQKEVYLF	9	Unmodified	_ILQKEVYLF_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45;ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000460366.5_1_1:150039914-150049098:+|nuORF;ENST00000478999.1_1_1:150039540-150040875:+|nuORF	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.8243408203125	2	576.8368	1151.65905	0.65497	0.00037781	-0.95429	-0.00055047	-0.29932	-0.00017266	576.8360896602172	60.582	0.35082	60.582	60.469	60.819	0					23	12	2	0	0	0	0.069258	1	14842	14842		45.74	9.6957	1	334940			14937	3986	8427	8427	18912	18912					0.08928346205311755
ILQKEVYLF	9	Unmodified	_ILQKEVYLF_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45;ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000460366.5_1_1:150039914-150049098:+|nuORF;ENST00000478999.1_1_1:150039540-150040875:+|nuORF	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8250122070312	2	576.8368	1151.65905	0.74556	0.00043007	-0.7032	-0.00040563	0.042354	2.4431E-05	577.3378227220617	60.571	0.39317	60.667	60.503	60.896	0.096985					30	13	3	0	0	0	0.10059	2	14801	14801;14863		38.176	11.039	1	454880			14938	3986	8427	8427	18913;18914	18913					0.08928346205311755
ILQKEVYLF	9	Unmodified	_ILQKEVYLF_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45;ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000460366.5_1_1:150039914-150049098:+|nuORF;ENST00000478999.1_1_1:150039540-150040875:+|nuORF	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3058471679688	2	576.8368	1151.65905	0.70676	0.00040769	-0.61527	-0.00035491	0.09149	5.2775E-05	576.8365159921725	60.657	0.37478	60.647	60.487	60.862	-0.0094566					30	13	3	0	0	0	0.13643	1	14862	14862		45.7	17.213	1	437500			14939	3986	8427	8427	18915	18915					0.08928346205311755
ILQKRKGF	8	Unmodified	_ILQKRKGF_					0	0	0		ENSG00000204195|ENST00000374521|AWAT1	ENSG00000204195|ENST00000374521|AWAT1	ENSG00000204195|ENST00000374521|AWAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7642517089844	2	495.316369	988.618185	0.52744	0.00026125	0.73272	0.00036293	1.2602	0.00062418	495.31648226485953	48.674	1.1854	48.674	48.386	49.572	0					71	42	3	0	0	0	0.34297	1	11076	11076		0	0	1	1362600			14940	8204	8428	8428	18916	18916					0.12342049676374245
ILQQRQKP	8	Unmodified	_ILQQRQKP_					0	0	0		ENSG00000206262|ENST00000383165|FOXL2NB	ENSG00000206262|ENST00000383165|FOXL2NB	ENSG00000206262|ENST00000383165|FOXL2NB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.80902099609375	2	505.808908	1009.60326	0.19938	0.00010085	0.28727	0.0001453	0.48665	0.00024615	505.80900655299524	30.979	0.50939	31.006	30.758	31.267	0.027157					40	18	3	0	0	0	0.4419	1	5770	5770		8.5933	0.43775	1	404980			14941	8318	8429	8429	18917	18917					0.098845578083683
ILQSRLLEV	9	Unmodified	_ILQSRLLEV_					0	0	0			REV__ENSG00000100982|ENST00000372409|PCIF1	REV__ENSG00000100982|ENST00000372409|PCIF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.8057250976562	2	535.832049	1069.64954	0.58277	0.00031227	-0.39579	-0.00021207	0.18699	0.00010019	535.831762764495	72.53	0.34824	72.53	72.348	72.696	0					22	12	2	0	0	0	0.22674	1	18462	18462		17.113	0	1	153600	+		14942	14240	8430	8430	18918	18918					0.11750577919792704
ILRFPEILQKI	11	Unmodified	_ILRFPEILQKI_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.27679443359375	3	457.290379	1368.84931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.24	1	13.14	12.64	13.64	-0.099291								0	0	0	0.37548	1	367	367		2.6312	1.3016	1				14943	2519	8431	8431	18919	18919					0.17963632867554225
ILRHAADLL	9	Unmodified	_ILRHAADLL_					0	0	0		ENST00000442255.5_1_3:16313687-16345066:+|nuORF;ENSG00000154814|ENST00000285083|OXNAD1	ENST00000442255.5_1_3:16313687-16345066:+|nuORF	ENST00000442255.5_1_3:16313687-16345066:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.3115234375	2	511.311284	1020.60801	0.32628	0.00016683	0.45558	0.00023295	0.78186	0.00039977	511.3113654736031	37.808	0.59882	37.899	37.638	38.237	0.090881					62	21	5	0	0	0	0.17787	1	7850	7850		26.884	2.8631	1	758680			14944	5146	8432	8432	18920	18920					0.09853441951122477
ILRKLPWMR	9	Unmodified	_ILRKLPWMR_					0	0	0		ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8719482421875	2	606.873528	1211.7325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.67	1	113.67	113.17	114.17	0								0	0	0	0.2672	1	29517	29517		0.52476	0.066424	1				14945	10574	8433	8433	18921	18921					0.1351061616678635
ILRKLPWMR	9	Unmodified	_ILRKLPWMR_					0	0	0		ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.872314453125	2	606.873528	1211.7325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.87	1	113.87	113.37	114.37	0								0	0	0	0.2672	1	29564	29564		0.52476	0.12405	1				14946	10574	8433	8433	18922	18922					0.1351061616678635
ILRKLPWMR	9	Unmodified	_ILRKLPWMR_					0	0	0		ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8721313476562	2	606.873528	1211.7325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.63	1	115.63	115.13	116.13	0								0	0	0	0.2672	1	29961	29961		0.52476	0.066424	1				14947	10574	8433	8433	18923	18923					0.1351061616678635
ILRKLPWMR	9	Unmodified	_ILRKLPWMR_					0	0	0		ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8720092773438	2	606.873528	1211.7325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.9	1	112.88	112.38	113.38	-0.017303								0	0	0	0.2672	1	29357	29357		0.52476	0.066424	1				14948	10574	8433	8433	18924	18924					0.1351061616678635
ILRKLPWMR	9	Unmodified	_ILRKLPWMR_					0	0	0		ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8728637695312	2	606.873528	1211.7325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.61	1	113.59	113.09	114.09	-0.017303								0	0	0	0.2672	1	29527	29527		0.52476	0.12405	1				14949	10574	8433	8433	18925	18925					0.1351061616678635
ILRKLPWMR	9	Unmodified	_ILRKLPWMR_					0	0	0		ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8720703125	2	606.873528	1211.7325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.01	1	115.99	115.49	116.49	-0.020988								0	0	0	0.2672	1	30067	30067		0.52476	0.12405	1				14950	10574	8433	8433	18926	18926					0.1351061616678635
ILRKLPWMR	9	Unmodified	_ILRKLPWMR_					0	0	0		ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.872314453125	2	606.873528	1211.7325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.11	1	113.13	112.63	113.63	0.014824								0	0	0	0.2672	1	29432	29432		0.52476	0	1				14951	10574	8433	8433	18927	18927					0.1351061616678635
ILRKLPWMR	9	Unmodified	_ILRKLPWMR_					0	0	0		ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	ENST00000444488.1_1_3:188665129-188665324:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8726196289062	2	606.873528	1211.7325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.14	1	113.16	112.66	113.66	0.014824								0	0	0	0.2672	1	29439	29439		0.52476	0.12405	1				14952	10574	8433	8433	18928	18928					0.1351061616678635
ILRLVQLRSM	10	Unmodified	_ILRLVQLRSM_					0	0	0			REV__ENST00000264607.8_1_2:239355144-239355219:+|nuORF	REV__ENST00000264607.8_1_2:239355144-239355219:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.7185974121094	3	410.256792	1227.74855	0.13916	5.709E-05	1.5961	0.00065481	1.7353	0.0007119	410.2574252732573	82.368	0.591	82.441	82.187	82.778	0.073097					33	23	2	0	0	0	0.32167	1	21569	21569		0.62683	0.51889	1	176970	+		14953	19640	8434	8434	18929	18929					0.14378277613036516
ILRQLMDV	8	Unmodified	_ILRQLMDV_					0	0	0			REV__FNIP1|p.A494Qfs*26|1|0.37|ENSG00000217128|chr5:131677742-131677742|C/-|frameshift_variant	REV__FNIP1|p.A494Qfs*26|1|0.37|ENSG00000217128|chr5:131677742-131677742|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.29559326171875	2	494.28642	986.558287	0.56406	0.00027881	-2.3065	-0.0011401	-1.7425	-0.00086128	494.28519006708706	48.466	0.34936	48.509	48.294	48.643	0.04332					18	12	2	0	0	0	0.31934	1	11025	11025		18.135	4.6271	1	251350	+		14954	22687	8435	8435	18930	18930					0.0644699095081478
ILRRAAAHLE	10	Unmodified	_ILRRAAAHLE_					0	0	0		ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8432006835938	2	575.346189	1148.67783	0.415	0.00023877	-2.6241	-0.0015098	-2.2091	-0.001271	575.3454592594685	88.398	2.6001	88.487	87.352	89.952	0.089195					247	141	4	0	0	0	0.39935	1	23702	23702		3.5965	1.5367	1	1377600			14955	8165	8436	8436	18931	18931					0.10943320619730912
ILRRARSL	8	Unmodified	_ILRRARSL_					0	0	0		ENSG00000132825|ENST00000370996|PPP1R3D	ENSG00000132825|ENST00000370996|PPP1R3D	ENSG00000132825|ENST00000370996|PPP1R3D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.81756591796875	2	492.824892	983.635232	0.52237	0.00025744	1.0957	0.00053997	1.618	0.00079741	492.82566365356814	63.822	1.2863	63.915	63.536	64.822	0.09288					66	46	3	0	0	0	0.43302	1	16066	16066		11.64	1.5664	1	192850			14956	3668	8437	8437	18932	18932					0.1427597028217633
ILRRLCHED	9	Unmodified	_ILRRLCHED_					0	0	0			REV__nc|ENSG00000162843|B1ANS9-2|WDR64	REV__nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3688354492188	2	577.808582	1153.60261	0.21678	0.00012526	-0.71424	-0.00041269	-0.49745	-0.00028743	577.808401306954	69.193	0.45956	69.174	68.921	69.38	-0.019783					30	15	3	0	0	0	0.25202	1	17502	17502		10.824	1.4765	1	213310	+		14957	17014	8438	8438	18933	18933					0.03195395097009168
ILRSCKIN	8	Unmodified	_ILRSCKIN_					0	0	0		nc|ENSG00000140848|Q96FN4-2|CPNE2;ENSG00000140848|ENST00000290776|CPNE2	nc|ENSG00000140848|Q96FN4-2|CPNE2	nc|ENSG00000140848|Q96FN4-2|CPNE2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7658386230469	2	473.778762	945.542971	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.768	1	66.768	66.268	67.268	0								0	0	0	0.36486	1	16730	16730		7.9102	0.62092	1				14958	4339	8439	8439	18934	18934					0.06802124153625755
ILRWETPW	8	Unmodified	_ILRWETPW_					0	0	0		ENST00000323786.9_2_16:70534866-70534908:-|nuORF	ENST00000323786.9_2_16:70534866-70534908:-|nuORF	ENST00000323786.9_2_16:70534866-70534908:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2789306640625	2	550.798009	1099.58147	0.43252	0.00023823	4.3394	0.0023901	4.7719	0.0026283	551.3011643054913	68.148	0.59093	68.129	67.754	68.345	-0.019157					37	20	2	0	0	0	0.34046	1	17185	17185		9.3474	0	1	1083800			14959	9398	8440	8440	18935	18935					0.035657530597973164
ILSANNKLF	9	Unmodified	_ILSANNKLF_					0	0	0		ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.80804443359375	2	510.297842	1018.58113	0.37047	0.00018905	0.35345	0.00018036	0.72391	0.00036941	510.29826751372366	53.818	0.45294	53.809	53.611	54.064	-0.0096054					25	16	2	0	0	0	0.1939	1	12708	12708		18.146	0.011366	1	358250			14960	9202	8441	8441	18936	18936					0.07258333339950696
ILSASDML	8	Unmodified	_ILSASDML_					0	0	0		nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-2|CES5A;ENSG00000159398|ENST00000290567|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A	nc|ENSG00000159398|Q6NT32-3|CES5A	nc|ENSG00000159398|Q6NT32-3|CES5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.9224548339844	2	425.222954	848.431355	-0.073689	-3.1334E-05	-0.32027	-0.00013619	-0.39396	-0.00016752	425.22271846411326	42.433	0.76875	42.518	42.093	42.861	0.085197					35	27	2	0	0	0	0.33995	1	9170	9170		10.183	0	1	171950			14961	5404	8442	8442	18937	18937					0.00107645005834911
ILSEVTAVF	9	Unmodified	_ILSEVTAVF_					0	0	0		nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2678527832031	2	489.778951	977.543348	0.06047	2.9617E-05	-0.5457	-0.00026727	-0.48524	-0.00023766	489.77881028159686	73.716	0.52725	73.716	73.392	73.92	0					27	18	2	0	0	0	0.24311	1	18873	18873		16.942	0	1	157660			14962	4010	8443	8443	18938	18938					0.05367822354469354
ILSGKSREK	9	Unmodified	_ILSGKSREK_					0	0	0		ENSG00000101751|ENST00000579534|POLI	ENSG00000101751|ENST00000579534|POLI	ENSG00000101751|ENST00000579534|POLI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3061828613281	2	509.306198	1016.59784	0.53133	0.00027061	-1.2632	-0.00064338	-0.73192	-0.00037277	509.30558761843713	82.958	1.3261	82.958	82.262	83.588	0					119	50	3	0	0	0	0.31038	1	21659	21659		7.2892	1.0834	1	674410			14963	1719	8444	8444	18939	18939					0.09020834225896124
ILSGKSREK	9	Unmodified	_ILSGKSREK_					0	0	0		ENSG00000101751|ENST00000579534|POLI	ENSG00000101751|ENST00000579534|POLI	ENSG00000101751|ENST00000579534|POLI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3059387207031	2	509.306198	1016.59784	0.42964	0.00021882	-1.3833	-0.00070452	-0.95365	-0.0004857	509.30566038754375	82.971	1.4337	82.95	82.224	83.657	-0.020584					114	57	3	0	0	0	0.31038	1	21704	21704		7.2892	7.2892	1	913370			14964	1719	8444	8444	18940	18940					0.09020834225896124
ILSGKSREK	9	Unmodified	_ILSGKSREK_					0	0	0		ENSG00000101751|ENST00000579534|POLI	ENSG00000101751|ENST00000579534|POLI	ENSG00000101751|ENST00000579534|POLI	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	509.306198	1016.59784	0.53133	0.00027061	-1.2632	-0.00064338	-0.73192	-0.00037277	509.30558761843713	82.958	1.3261	82.958	82.262	83.588	0	0.0105	-1.1713E-05	NaN	7.2892	119	50	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	674410			14965	1719	8444	8444							0.09020834225896124
ILSGKSREK	9	Unmodified	_ILSGKSREK_					0	0	0		ENSG00000101751|ENST00000579534|POLI	ENSG00000101751|ENST00000579534|POLI	ENSG00000101751|ENST00000579534|POLI	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	509.306198	1016.59784	0.42964	0.00021882	-1.3833	-0.00070452	-0.95365	-0.0004857	509.30566038754375	82.971	1.4337	82.95	82.224	83.657	-0.020584	0.0033713	-0.000134	NaN	7.2892	114	57	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	913370			14966	1719	8444	8444							0.09020834225896124
ILSGVILEV	9	Unmodified	_ILSGVILEV_					0	0	0		ENSG00000161544|ENST00000293230|CYGB	ENSG00000161544|ENST00000293230|CYGB	ENSG00000161544|ENST00000293230|CYGB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2188720703125	2	471.797143	941.579734	0.51222	0.00024167	-0.40325	-0.00019025	0.10897	5.1413E-05	471.79686679299664	77.985	0.57082	78.043	77.819	78.39	0.058151					31	20	2	0	0	0	0.1854	1	20152	20152		32.305	1.6689	1	313560			14967	5517	8445	8445	18941	18941					0.10660699251184269
ILSKMVILY	9	Unmodified	_ILSKMVILY_					0	0	0			REV__ENST00000278520.9_2_11:96117649-96117892:-|nuORF	REV__ENST00000278520.9_2_11:96117649-96117892:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8145141601562	2	540.330296	1078.64604	0.7295	0.00039417	0.49164	0.00026565	1.2211	0.00065982	540.832124113459	85.92	0.56664	85.911	85.644	86.211	-0.0090027					38	20	3	0	0	0	0.25879	1	22521	22521		4.756	0	1	125790	+		14968	19700	8446	8446	18942	18942					0.10986191821598368
ILSLHTLFF	9	Unmodified	_ILSLHTLFF_					0	0	0			REV__ENSG00000221954|ENST00000335238|OR4C12	REV__ENSG00000221954|ENST00000335238|OR4C12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.8182373046875	2	545.81841	1089.62227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.32	1	116.32	115.82	116.82	0								0	0	0	0.2672	1	30116	30116		0.52476	0	1		+		14969	19102	8447	8447	18943	18943					0.08104094379427806
ILSLPRQLVT	10	Unmodified	_ILSLPRQLVT_					0	0	0			REV__ENSG00000005007|ENST00000262803|UPF1	REV__ENSG00000005007|ENST00000262803|UPF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8222045898438	2	570.360973	1138.70739	0.5407	0.00030839	-0.40282	-0.00022975	0.13788	7.8639E-05	570.3608281861088	43.212	0.66111	43.289	43.075	43.736	0.077518					34	23	2	0	0	0	0.29038	1	9573	9573		13.042	3.6593	1	451320	+		14970	13338	8448	8448	18944	18944					0.14358839845203875
ILSLPRQLVT	10	Unmodified	_ILSLPRQLVT_					0	0	0			REV__ENSG00000005007|ENST00000262803|UPF1	REV__ENSG00000005007|ENST00000262803|UPF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	570.360973	1138.70739	0.22549	0.00012861	0.024404	1.3919E-05	0.2499	0.00014253	570.3610231613015	43.41	0.5436	43.41	43.087	43.63	0	0.078128	0.00018773	NaN	13.042	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	532920	+		14971	13338	8448	8448							0.14358839845203875
ILSSHRSNFK	10	Unmodified	_ILSSHRSNFK_					0	0	0		nc|ENSG00000254838|Q7Z2Y8|GVINP1	nc|ENSG00000254838|Q7Z2Y8|GVINP1	nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.3162841796875	2	594.827829	1187.64111	0.7011	0.00041703	-0.061409	-3.6528E-05	0.63969	0.0003805	594.8277535306148	40.056	0.9948	40.149	39.83	40.824	0.09267					90	35	4	0	0	0	0.33104	1	8602	8602		16.149	0.30192	1	2310300			14972	12981	8449	8449	18945	18945					0.05479024003170707
ILSSRLRSS	9	Unmodified	_ILSSRLRSS_					0	0	0			REV__ENSG00000180921|ENST00000388913|FAM83H	REV__ENSG00000180921|ENST00000388913|FAM83H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.80401611328125	2	509.803823	1017.59309	0.42826	0.00021833	-0.17311	-8.8252E-05	0.25515	0.00013008	509.8036382599112	74.281	2.861	74.281	72.534	75.395	0					173	101	3	0	0	0	0.30623	1	19206	19206		7.9102	7.9102	1	1842200	+		14973	18126	8450	8450	18946	18946					0.08499950083137264
ILTATETNTF	10	Unmodified	_ILTATETNTF_					0	0	0			REV__ENST00000489369.5_1_9:676972-732786:+|nuORF	REV__ENST00000489369.5_1_9:676972-732786:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8140258789062	2	555.787504	1109.56045	0.79578	0.00044229	0.054008	3.0017E-05	0.84979	0.0004723	555.7876643180563	60.692	0.21555	60.692	60.635	60.851	0					9	7	2	0	0	0	0.30079	1	14907	14907		20.454	9.6297	1	248610	+		14974	21588	8451	8451	18947	18947					0.010056981696152434
ILTERGYSF	9	Unmodified	_ILTERGYSF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000436287.1_1_1:224051789-224052101:-|nuORF;ENST00000570019.1_1_15:34666200-34666557:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2858276367188	2	543.284931	1084.55531	0.65354	0.00035506	1.4726	0.00080006	2.1262	0.0011551	543.2861566091623	48.27	1.2315	48.27	47.987	49.218	0					87	43	3	0	0	0	0.003673	2	11014	11014;11079		96.936	32.699	1	881530			14975	1050;2147	8452	8452	18948;18949	18948					0.016414390976706272
ILTERGYSF	9	Unmodified	_ILTERGYSF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000436287.1_1_1:224051789-224052101:-|nuORF;ENST00000570019.1_1_15:34666200-34666557:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.28564453125	2	543.284931	1084.55531	0.89959	0.00048873	1.182	0.00064218	2.0816	0.0011309	543.2862139591796	48.208	1.2422	48.255	47.945	49.187	0.04752					79	45	3	0	0	0	0.0048951	2	11005	11005;11054		87.258	23.022	1	980440			14976	1050;2147	8452	8452	18950;18951	18950					0.016414390976706272
ILTERGYSF	9	Unmodified	_ILTERGYSF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000436287.1_1_1:224051789-224052101:-|nuORF;ENST00000570019.1_1_15:34666200-34666557:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.284912109375	2	543.284931	1084.55531	0.76175	0.00041385	0.90541	0.0004919	1.6672	0.00090574	543.2860278975916	48.162	1.3201	48.205	47.987	49.307	0.04332					80	48	3	0	0	0	0.0023895	1	10988	10988		107.1	42.863	1	956850			14977	1050;2147	8452	8452	18952	18952					0.016414390976706272
ILTFCLPVL	9	Unmodified	_ILTFCLPVL_					0	0	0		ENST00000333957.8_1_12:22602475-22602664:-|nuORF	ENST00000333957.8_1_12:22602475-22602664:-|nuORF	ENST00000333957.8_1_12:22602475-22602664:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8038024902344	2	509.803914	1017.59328	0.42826	0.00021833	-0.35251	-0.00017971	0.075749	3.8617E-05	509.8036382599112	74.281	2.861	74.281	72.534	75.395	0					173	101	3	0	0	0	0.23775	1	18840	18840		18.135	0	1	1842200			14978	9461	8453	8453	18953	18953					0.08518233758763927
ILTFCLPVL	9	Unmodified	_ILTFCLPVL_					0	0	0		ENST00000333957.8_1_12:22602475-22602664:-|nuORF	ENST00000333957.8_1_12:22602475-22602664:-|nuORF	ENST00000333957.8_1_12:22602475-22602664:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8038635253906	2	509.803914	1017.59328	0.36866	0.00018795	-0.12705	-6.4768E-05	0.24162	0.00012318	509.803738168651	74.265	2.9138	74.235	72.454	75.367	-0.030655					196	105	3	0	0	0	0.27532	1	18859	18859		12.532	0	1	2074000			14979	9461	8453	8453	18954	18954					0.08518233758763927
ILTFQWRFYLS	11	Unmodified	_ILTFQWRFYLS_					0	0	0		ENSG00000171451|ENST00000310045|DSEL	ENSG00000171451|ENST00000310045|DSEL	ENSG00000171451|ENST00000310045|DSEL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.3086242675781	3	491.934484	1472.78162	0.91727	0.00045123	2.1267	0.0010462	3.0439	0.0014974	491.93524279459973	50.611	0.58514	50.656	50.343	50.928	0.044891					45	20	3	0	0	0	0.33287	1	11825	11825		0.45452	0	1	220820			14980	6542	8454	8454	18955	18955					0.06414182936782709
ILTSNKQGKT	10	Unmodified	_ILTSNKQGKT_					0	0	0			REV__ENSG00000205929|ENST00000479548|C21orf62	REV__ENSG00000205929|ENST00000479548|C21orf62	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.660888671875	2	545.316763	1088.61897	0.42754	0.00023314	0.2428	0.0001324	0.67033	0.00036554	545.3165857296723	97.648	0.32906	97.709	97.561	97.89	0.061516					53	39	2	0	0	0	0.31889	1	26141	26141		6.2058	1.8765	1	104190	+		14981	19010	8455	8455	18956	18956					0.07820799534783873
ILTSRDKF	8	Unmodified	_ILTSRDKF_					0	0	0			REV__nc|ENSG00000088876|Q6P1L6-2|ZNF343	REV__nc|ENSG00000088876|Q6P1L6-2|ZNF343	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.8086242675781	2	490.282192	978.549831	0.18035	8.842E-05	-0.51566	-0.00025282	-0.33531	-0.0001644	490.28180370351714	57.408	0.48924	57.391	57.117	57.606	-0.0172					40	17	3	0	0	0	0.33995	1	13780	13780		5.7604	0	1	474640	+		14982	14016	8456	8456	18957	18957					0.05969760305856653
ILVAMAKVF	9	Unmodified	_ILVAMAKVF_					0	0	0			REV__nc|ENSG00000164180|Q8NDZ6-2|TMEM161B	REV__nc|ENSG00000164180|Q8NDZ6-2|TMEM161B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.30413818359375	2	496.304081	990.59361	0.47767	0.00023707	-0.065784	-3.2649E-05	0.41189	0.00020442	496.3039220074158	72.104	1.8162	72.104	71.402	73.218	0					151	65	3	0	0	0	0.30166	1	18305	18305		8.5933	2.2392	1	1130700	+		14983	17134	8457	8457	18958	18958					0.09793653478629949
ILVCPRLW	8	Unmodified	_ILVCPRLW_					0	0	0		ENST00000359766.7_1_2:171862696-171862762:-|nuORF	ENST00000359766.7_1_2:171862696-171862762:-|nuORF	ENST00000359766.7_1_2:171862696-171862762:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2955017089844	2	500.294048	998.573543	0.41667	0.00020846	2.0944	0.0010478	2.5111	0.0012563	500.2951710719141	17.143	0.32692	17.082	16.971	17.298	-0.060431					18	11	2	0	0	0	0.344	1	1540	1540		0.69038	0.16561	1	32764			14984	9667	8458	8458	18959	18959					0.07419902538663337
ILVKCAQRF	9	Unmodified	_ILVKCAQRF_					0	0	0		ENSG00000186335|ENST00000335244|SLC36A2	ENSG00000186335|ENST00000335244|SLC36A2	ENSG00000186335|ENST00000335244|SLC36A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8289184570312	2	539.315512	1076.61647	0.85225	0.00045963	0.64569	0.00034823	1.4979	0.00080786	539.3155657657123	60.544	0.7427	60.534	60.249	60.992	-0.0094566					54	27	3	0	0	0	0.25417	1	14722	14722		8.5933	0.68312	1	3062600			14985	7609	8459	8459	18960	18960					0.08122672596095981
ILVKCAQRF	9	Unmodified	_ILVKCAQRF_					0	0	0		ENSG00000186335|ENST00000335244|SLC36A2	ENSG00000186335|ENST00000335244|SLC36A2	ENSG00000186335|ENST00000335244|SLC36A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	539.315512	1076.61647	0.72052	0.00038859	1.1277	0.00060821	1.8483	0.0009968	539.3159633309442	60.506	0.79861	60.506	60.281	61.08	0	-0.014232	0.00020967	NaN	8.5933	53	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2880800			14986	7609	8459	8459							0.08122672596095981
ILVLTLWRP	9	Unmodified	_ILVLTLWRP_					0	0	0		ENST00000375911.1_1_6:31628311-31628413:-|nuORF	ENST00000375911.1_1_6:31628311-31628413:-|nuORF	ENST00000375911.1_1_6:31628311-31628413:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2704467773438	2	555.855327	1109.6961	0.24342	0.00013531	-0.031865	-1.7713E-05	0.21156	0.0001176	555.8552590206743	32.956	0.44079	33.011	32.814	33.255	0.055309					27	15	3	0	0	0	0.25066	1	6380	6380		11.64	0	1	152150			14987	9918	8460	8460	18961	18961					0.1456406254171725
ILVNTSKRN	9	Unmodified	_ILVNTSKRN_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.3287963867188	2	522.811648	1043.60874	0.49209	0.00025727	1.0516	0.00054977	1.5437	0.00080704	522.8122942018908	88.474	0.62189	88.563	88.347	88.969	0.089195					46	26	2	0	0	0	0.25526	1	23337	23337		7.9102	0	1	184970			14988	4101	8461	8461	18962	18962					0.08868236600187629
ILVNTSKRN	9	Unmodified	_ILVNTSKRN_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	522.811648	1043.60874	0.6057	0.00031667	0.78181	0.00040874	1.3875	0.00072541	522.8122313287713	88.659	0.56334	88.659	88.38	88.943	0	0.048103	-0.00016995	NaN	15.847	38	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125670			14989	4101	8461	8461							0.08868236600187629
ILVPVCSLK	9	Unmodified	_ILVPVCSLK_					0	0	0			REV__ENSG00000138175|ENST00000260746|ARL3	REV__ENSG00000138175|ENST00000260746|ARL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8005676269531	2	486.301539	970.588524	0.49302	0.00023975	-0.14924	-7.2575E-05	0.34378	0.00016718	486.30148240115767	64.534	1.278	64.525	63.503	64.781	-0.0095291					60	45	2	0	0	0	0.24311	1	16107	16107		16.942	0	1	288600	+		14990	15908	8462	8462	18963	18963					0.10205349616012427
ILVQHMYLNL	10	Unmodified	_ILVQHMYLNL_					0	0	0			REV__ENSG00000135108|ENST00000622495|FBXO21	REV__ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.34716796875	2	622.347009	1242.67946	0.19645	0.00012226	0.51749	0.00032206	0.71394	0.00044432	622.3471316749807	85.769	2.5488	85.854	85.024	87.573	0.084251					256	102	3	0	0	0	0.38515	1	22395	22395		6.2058	0.9089	1	1032600	+		14991	15722	8463	8463	18964	18964					0.06783193593491887
ILVSKGPSL	9	Unmodified	_ILVSKGPSL_					0	0	0			REV__ENST00000490714.1_1_21:34975667-35014025:-|nuORF	REV__ENST00000490714.1_1_21:34975667-35014025:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7506103515625	2	457.289485	912.564418	0.12555	5.7411E-05	0.14518	6.6391E-05	0.27073	0.0001238	457.2894055799685	47.235	0.71594	47.287	46.984	47.7	0.052574					55	26	3	0	0	0	0.21389	1	10702	10702		19.257	0	1	680530	+		14992	19001	8464	8464	18965	18965					0.10463832454001931
ILVTIKQGF	9	Unmodified	_ILVTIKQGF_					0	0	0			REV__nc|ENSG00000102125|Q16635-9|TAFAZZIN	REV__nc|ENSG00000102125|Q16635-9|TAFAZZIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8040771484375	2	509.81841	1017.62227	0.64975	0.00033125	-2.0265	-0.0010332	-1.3768	-0.00070191	509.8174415178288	78.684	0.49936	78.653	78.37	78.87	-0.030426					30	18	2	0	0	0	0.24581	1	20322	20322		16.942	4.4107	1	172840	+		14993	14306	8465	8465	18966	18966					0.11416094379421793
ILWEEERAE	9	Unmodified	_ILWEEERAE_					0	0	0		nc|ENSG00000155275|Q8IYL2-2|TRMT44;ENSG00000155275|ENST00000389737|TRMT44	nc|ENSG00000155275|Q8IYL2-2|TRMT44	nc|ENSG00000155275|Q8IYL2-2|TRMT44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.81640625	2	587.790578	1173.5666	0.33264	0.00019552	-3.8262	-0.002249	-3.4936	-0.0020535	587.7882717375838	62.142	0.34615	62.142	61.92	62.266	0					17	12	2	0	0	0	0.25066	1	15252	15252		11.64	1.5664	1	221750			14994	5165	8466	8466	18967	18967					-0.013237835988320512
ILWGHIFK	8	Unmodified	_ILWGHIFK_					0	0	0			REV__nc|ENSG00000288674|P49810-2|PSEN2	REV__nc|ENSG00000288674|P49810-2|PSEN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.3095397949219	2	507.300188	1012.58582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.439	1	93.439	92.939	93.939	-0.00051117								0	0	0	0.36961	1	24884	24884		5.7604	0.52976	1		+		14995	16202	8467	8467	18968	18968					0.08003262273359724
ILWHEMWHEGL	11	Unmodified	_ILWHEMWHEGL_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7881774902344	3	484.236057	1449.68634	0.67099	0.00032492	-0.92823	-0.00044948	-0.25723	-0.00012456	484.2357571419033	36.719	0.54019	36.812	36.602	37.142	0.093014					48	19	3	0	0	0	0.3322	1	7507	7507		4.7159	0	1	549160			14996	8126	8468	8468	18969	18969					-0.020514935259598133
ILWNQKELIPF	11	Unmodified	_ILWNQKELIPF_					0	0	0			REV__ENSG00000140463|ENST00000268057|BBS4	REV__ENSG00000140463|ENST00000268057|BBS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.226806640625	3	467.602734	1399.78637	-0.11712	-5.4767E-05	-2.2506	-0.0010524	-2.3677	-0.0011071	467.60151119351343	18.994	0.27248	18.876	18.784	19.056	-0.11739					13	9	2	0	0	0	0.33334	1	2136	2136		1.2148	0	1	33918	+		14997	16035	8469	8469	18970	18970					0.1024706707949008
ILYFDVYA	8	Unmodified	_ILYFDVYA_					0	0	0		ENST00000434555.6_1_1:44446805-44447499:+|nuORF;ENSG00000117411|ENST00000372324|B4GALT2;nc|ENSG00000117411|O60909-3|B4GALT2	ENST00000434555.6_1_1:44446805-44447499:+|nuORF	ENST00000434555.6_1_1:44446805-44447499:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.8106384277344	2	502.260394	1002.50623	-0.070816	-3.5568E-05	-0.2976	-0.00014947	-0.36842	-0.00018504	502.25992456897956	61.838	0.49525	61.935	61.759	62.254	0.096985					20	17	2	0	0	0	0.30043	1	15219	15219		30.198	9.3272	1	174610			14998	2792	8470	8470	18971	18971					0.0050815080869597296
ILYISGALSL	10	Unmodified	_ILYISGALSL_					0	0	0			REV__ENSG00000188869|ENST00000359440|TMC3	REV__ENSG00000188869|ENST00000359440|TMC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8275756835938	2	525.3157	1048.61685	0.54309	0.00028529	-0.60811	-0.00031945	-0.06502	-3.4156E-05	525.3152526217608	88.547	0.33007	88.636	88.394	88.724	0.089195					16	13	2	0	0	0	0.29589	1	23391	23391		22.736	5.6234	1	116320	+		14999	18577	8471	8471	18972	18972					0.09448370796940253
ILYKLLLAFH	10	Unmodified	_ILYKLLLAFH_					0	0	0			REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.8522644042969	3	410.925148	1229.75362	-0.3846	-0.00015804	0.031327	1.2873E-05	-0.35327	-0.00014517	410.9252549369084	13.402	0.14512	13.402	13.282	13.427	0					5	4	2	0	0	0	0.32162	1	396	396		0.77653	0.50751	1	9200.9	+		15000	13796	8472	8472	18973	18973					0.14792904747332614
ILYTILFMVF	10	Unmodified	_ILYTILFMVF_					0	0	0			REV__nc|ENSG00000260811|A6NMZ5|OR4C45	REV__nc|ENSG00000260811|A6NMZ5|OR4C45	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.91998291015625	3	420.575128	1258.70355	-0.018149	-7.6332E-06	-0.018353	-7.7187E-06	-0.036502	-1.5352E-05	420.5752599510675	23.907	0.40949	23.834	23.588	23.997	-0.072559					21	13	2	0	0	0	0.31745	1	3632	3632		4.1895	0.60244	1	48422	+		15001	23227	8473	8473	18974	18974					0.08455034027156216
ILYTWLIY	8	Unmodified	_ILYTWLIY_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8079833984375	2	542.807511	1083.60047	0.93496	0.0005075	-0.0086134	-4.6754E-06	0.92634	0.00050283	542.8073887217688	78.34	3.3554	78.31	77.238	80.594	-0.030434					321	127	4	0	0	0	0.45015	1	20155	20155		5.7604	0.52976	1	1617500			15002	3647	8474	8474	18975	18975					0.062012896308715426
ILYVEPIH	8	Unmodified	_ILYVEPIH_					0	0	0			REV__ENST00000374161.7_3_10:50011336-50031259:+|nuORF	REV__ENST00000374161.7_3_10:50011336-50031259:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2638854980469	2	492.28166	982.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.574	1	59.669	59.169	60.169	0.095093								0	0	0	0.33276	1	14509	14509		22.453	3.1956	1		+		15003	15388	8475	8475	18976	18976					0.05679545936936847
ILYVMPLTL	9	Unmodified	_ILYVMPLTL_					0	0	0			REV__ENSG00000205495|ENST00000380370|OR52J3	REV__ENSG00000205495|ENST00000380370|OR52J3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.302734375	2	531.817021	1061.61949	0.47942	0.00025496	-2.119	-0.0011269	-1.6395	-0.00087193	531.8167311126964	81.476	1.705	81.476	81.108	82.813	0					198	67	6	0	0	0	0.193	1	21213	21213		24.674	12.142	1	1710600	+		15004	18993	8476	8476	18977	18977					0.09114502930242452
ILYWQDIM	8	Unmodified	_ILYWQDIM_					0	0	0			REV__ENST00000555815.5_1_15:25924490-25961922:-|nuORF	REV__ENST00000555815.5_1_15:25924490-25961922:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7830200195312	2	541.272978	1080.5314	0.48833	0.00026432	0.0049867	2.6992E-06	0.49331	0.00026702	541.2728458567627	68.383	0.36282	68.383	68.178	68.541	0					23	13	3	0	0	0	0.31617	1	17210	17210		26.884	3.7352	1	271060	+		15005	19016	8477	8477	18978	18978					-0.005641176603603526
IMALLHSLD	9	Unmodified	_IMALLHSLD_					0	0	0			REV__ENSG00000100196|ENST00000216014|KDELR3	REV__ENSG00000100196|ENST00000216014|KDELR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2957458496094	2	506.778428	1011.5423	0.035304	1.7891E-05	1.2754	0.00064633	1.3107	0.00066422	507.2801772068883	96.839	0.12399	96.839	96.777	96.901	0					14	11	2	0	0	0	0.25938	1	25875	25875		4.3292	2.0265	1	77139	+		15006	14167	8478	8478	18979	18979					0.036992847139231344
IMALLHSLD	9	Unmodified	_IMALLHSLD_					0	0	0			REV__ENSG00000100196|ENST00000216014|KDELR3	REV__ENSG00000100196|ENST00000216014|KDELR3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.778428	1011.5423	0.31905	0.00016169	1.1965	0.00060635	1.5155	0.00076804	507.2802801192829	96.925	0.21655	96.92	96.777	96.993	-0.0055466	0.040407	-2.9292E-05	NaN	4.3292	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57666	+		15007	14167	8478	8478							0.036992847139231344
IMAPVPVE	8	Unmodified	_IMAPVPVE_					0	0	0			REV__ENSG00000078098|ENST00000188790|FAP	REV__ENSG00000078098|ENST00000188790|FAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2342529296875	2	428.235864	854.457176	-0.017228	-7.3776E-06	-2.5704	-0.0011007	-2.5876	-0.0011081	428.234210465095	62.334	0.89707	62.431	62.12	63.017	0.096985					88	32	5	0	0	0	0.28326	1	15343	15343		36.466	2.2788	1	1087000	+		15008	13852	8479	8479	18980	18980					0.02412539248120993
IMCATIAMVL	10	Unmodified	_IMCATIAMVL_					0	0	0		ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000588867.1_1_18:21114346-21115663:-|nuORF	ENSG00000141458|ENST00000269228|NPC1	ENSG00000141458|ENST00000269228|NPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3082885742188	2	533.278892	1064.54323	0.34051	0.00018158	-2.7273	-0.0014544	-2.3868	-0.0012728	533.7794259097631	61.578	0.34723	61.578	61.437	61.784	0					19	12	2	0	0	0	0.29519	1	15193	15193		10.824	0	1	127170			15009	4383	8480	8480	18981	18981					0.013540397669657978
IMDAGHDTCQ	10	Unmodified	_IMDAGHDTCQ_					0	0	0			REV__nc|ENSG00000054219|O60449-3|LY75	REV__nc|ENSG00000054219|O60449-3|LY75	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.26611328125	2	545.718241	1089.42193	0.47841	0.00026108	-2.228	-0.0012159	-1.7496	-0.00095479	545.7170249804143	64.87	0.31818	64.858	64.78	65.098	-0.011337					14	11	2	0	0	0	0.31847	1	16116	16116		3.5965	1.019	1	111470	+		15010	22885	8481	8481	18982	18982					-0.11920491342016248
IMDAGHDTCQ	10	Unmodified	_IMDAGHDTCQ_					0	0	0			REV__nc|ENSG00000054219|O60449-3|LY75	REV__nc|ENSG00000054219|O60449-3|LY75	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	545.718241	1089.42193	0.59961	0.00032722	-2.8268	-0.0015426	-2.2272	-0.0012154	545.7166490923938	64.85	0.29079	64.943	64.773	65.064	0.09288	0.042063	-0.00024813	NaN	3.5965	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108520	+		15011	22885	8481	8481							-0.11920491342016248
IMDNPFQKKS	10	Unmodified	_IMDNPFQKKS_					0	0	0			REV__ENST00000591330.5_1_17:40855746-40879722:-|nuORF	REV__ENST00000591330.5_1_17:40855746-40879722:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2158203125	3	403.209508	1206.60669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.355	1	22.355	21.855	22.855	0								0	0	0	0.37157	1	3120	3120		3.0723	1.48	1		+		15012	14608	8482	8482	18983	18983					0.011654398000700894
IMDQIQITAAL	11	Unmodified	_IMDQIQITAAL_					0	0	0		ENST00000582740.1_1_17:56700236-56725433:-|nuORF	ENST00000582740.1_1_17:56700236-56725433:-|nuORF	ENST00000582740.1_1_17:56700236-56725433:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.7532043457031	3	406.225046	1215.65331	-0.010262	-4.1688E-06	0.43593	0.00017709	0.42567	0.00017292	406.225290661214	37.836	0.706	37.927	37.693	38.399	0.090881					31	25	2	0	0	0	0.329	1	7761	7761		4.7159	2.6299	1	131170			15013	12089	8483	8483	18984	18984					0.05410879631381249
IMDVIGCL	8	Unmodified	_IMDVIGCL_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.2229919433594	2	432.2219	862.429246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.465	1	57.551	57.051	58.051	0.085621								0	0	0	0.3683	1	13865	13865		6.3541	0	1				15014	1632	8484	8484	18985	18985					-0.0074710700362174975
IMEKALVICVD	11	Unmodified	_IMEKALVICVD_					0	0	0			REV__ENST00000466032.1_1_2:86754275-86769420:-|nuORF	REV__ENST00000466032.1_1_2:86754275-86769420:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.8983154296875	3	411.890899	1232.65087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.817	1	13.817	13.317	14.317	0								0	0	0	0.3772	1	538	538		2.2527	0.16672	1		+		15015	14884	8485	8485	18986	18986					0.043847079020224555
IMEPTASSV	9	Unmodified	_IMEPTASSV_					0	0	0		ENSG00000007968|ENST00000361729|E2F2	ENSG00000007968|ENST00000361729|E2F2	ENSG00000007968|ENST00000361729|E2F2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.72906494140625	2	467.731143	933.447733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.937	1	45.997	45.497	46.497	0.059834								0	0	0	0.17683	1	10305	10305		28.487	1.6032	1				15016	387	8486	8486	18987	18987					-0.021652738280636186
IMFFRQSF	8	Unmodified	_IMFFRQSF_					0	0	0			REV__ENST00000422221.1_1_X:40936263-40936386:+|nuORF	REV__ENST00000422221.1_1_X:40936263-40936386:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.3186645507812	2	538.273312	1074.53207	0.66568	0.00035832	4.1041	0.0022091	4.7698	0.0025674	538.2760277347419	72.89	0.13576	72.86	72.818	72.954	-0.029305					7	4	2	0	0	0	0.3366	1	18615	18615		18.135	4.6271	1	62261	+		15017	20871	8487	8487	18988	18988					-0.0022127822066977387
IMGVVTITV	9	Unmodified	_IMGVVTITV_					0	0	0			REV__ENST00000464583.5_1_6:4126435-4126468:-|nuORF	REV__ENST00000464583.5_1_6:4126435-4126468:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7652893066406	2	466.777896	931.54124	0.10603	4.9493E-05	-0.36431	-0.00017005	-0.25828	-0.00012056	466.7775968772747	53.237	0.87362	53.237	52.824	53.698	0					56	32	2	0	0	0	0.24581	1	12667	12667		16.942	1.0951	1	755160	+		15018	21267	8488	8488	18989	18989					0.07273070345013366
IMLMYKQLII	10	Unmodified	_IMLMYKQLII_					0	0	0			REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|175|3|sense	REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|175|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.2121276855469	3	422.583517	1264.72872	0.31766	0.00013424	-0.021531	-9.0986E-06	0.29613	0.00012514	422.9179472902341	54.686	0.49889	54.67	54.451	54.95	-0.015923					31	17	2	0	0	0	0.31847	1	13060	13060		3.5871	0	1	557620	+		15019	22746	8489	8489	18990	18990					0.10694765558105246
IMLRSHVLV	9	Unmodified	_IMLRSHVLV_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.31591796875	2	534.323337	1066.63212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.977	1	60.977	60.477	61.477	0								0	0	0	0.091794	1	14949	14949		48.346	22.947	1				15020	3181	8490	8490	18991	18991					0.10146959113149023
IMLSRHLPL	9	Unmodified	_IMLSRHLPL_					0	0	0		ENST00000409875.5_1_2:114384945-114385508:+|nuORF	ENST00000409875.5_1_2:114384945-114385508:+|nuORF	ENST00000409875.5_1_2:114384945-114385508:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2630004882812	2	540.323337	1078.63212	0.71392	0.00038575	0.86343	0.00046653	1.5773	0.00085228	540.3236727666031	20.921	0.39316	20.868	20.695	21.088	-0.05291					22	13	2	0	0	0	0.25526	1	2704	2704		7.9102	1.5561	1	72673			15021	10260	8491	8491	18992	18992					0.0959495911315571
IMMLSYLMI	9	Unmodified	_IMMLSYLMI_					0	0	0			REV__ENST00000551727.5_1_12:104520004-104522249:-|nuORF	REV__ENST00000551727.5_1_12:104520004-104522249:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7908935546875	2	557.789092	1113.56363	0.34137	0.00019041	3.4496	0.0019241	3.791	0.0021146	557.7909016133495	71.264	0.41577	71.264	71.015	71.431	0					21	14	2	0	0	0	0.18158	1	18126	18126		26.341	2.3207	1	364650	+		15022	22210	8492	8492	18993	18993					0.01139210426754289
IMMLSYLMI	9	Unmodified	_IMMLSYLMI_					0	0	0			REV__ENST00000551727.5_1_12:104520004-104522249:-|nuORF	REV__ENST00000551727.5_1_12:104520004-104522249:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	557.789092	1113.56363	0.34137	0.00019041	3.4496	0.0019241	3.791	0.0021146	557.7909016133495	71.264	0.41577	71.264	71.015	71.431	0	-0.018088	-0.00032154	NaN	26.341	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	364650	+		15023	22210	8492	8492							0.01139210426754289
IMNVEWKQ	8	Unmodified	_IMNVEWKQ_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2846069335938	2	524.268227	1046.5219	0.3129	0.00016404	-0.1131	-5.9294E-05	0.1998	0.00010475	524.2684464547259	42.577	0.4838	42.663	42.407	42.891	0.085197					45	17	3	0	0	0	0.34167	1	9205	9205		7.2892	0	1	693250	+		15024	19088	8493	8493	18994	18994					0.0005011405410186853
IMPFLMNKF	9	Unmodified	_IMPFLMNKF_					0	0	0			REV__ENSG00000158125|ENST00000379416|XDH	REV__ENSG00000158125|ENST00000379416|XDH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.280029296875	2	570.800848	1139.58714	0.47657	0.00027203	-1.6098	-0.00091885	-1.1332	-0.00064682	570.7995436111866	54.553	0.16081	54.537	54.389	54.55	-0.015923					6	4	2	0	0	0	0.24913	1	12932	12932		12.532	0	1	160920	+		15025	16803	8494	8494	18995	18995					0.0229339225561489
IMPFLMNKF	9	Unmodified	_IMPFLMNKF_					0	0	0			REV__ENSG00000158125|ENST00000379416|XDH	REV__ENSG00000158125|ENST00000379416|XDH	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	570.800848	1139.58714	0.49709	0.00028374	-2.6955	-0.0015386	-2.1984	-0.0012548	571.3012580053336	54.387	0.16482	54.387	54.24	54.405	0	-0.074982	-0.00090926	NaN	12.532	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281540	+		15026	16803	8494	8494							0.0229339225561489
IMPIITESF	9	Oxidation (M)	_IM(Oxidation (M))PIITESF_		IM(1)PIITESF		IM(120)PIITESF	0	0	1		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7783203125	2	533.778093	1065.54163	0.36954	0.00019725	0.033187	1.7715E-05	0.40273	0.00021497	533.7781265845787	69.32	0.58412	69.32	69.006	69.59	0					42	20	3	0	0	0	0.00097449	2	17487	17487;17538		123.1	87.052	1	511750			15027	6992	8495	8495	18996;18997	18996		785			0.011484452742024587
IMPIITESF	9	Oxidation (M)	_IM(Oxidation (M))PIITESF_		IM(1)PIITESF		IM(110)PIITESF	0	0	1		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7781372070312	2	533.778093	1065.54163	0.34366	0.00018344	-0.32353	-0.00017269	0.020128	1.0744E-05	533.777898361225	69.261	0.59025	69.327	68.958	69.548	0.066048					33	20	2	0	0	0	0.00207	2	17471	17471;17523		109.63	65.222	1	469360			15028	6992	8495	8495	18998;18999	18998		785			0.011484452742024587
IMPIITESF	9	Oxidation (M)	_IM(Oxidation (M))PIITESF_		IM(1)PIITESF		IM(110)PIITESF	0	0	1		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7781982421875	2	533.778093	1065.54163	0.37754	0.00020152	-0.11589	-6.1857E-05	0.26165	0.00013967	533.7781235660376	69.37	0.64182	69.347	69.059	69.701	-0.022087					43	22	3	0	0	0	0.00207	2	17484	17484;17533		109.63	79.404	1	407890			15029	6992	8495	8495	19000;19001	19000		785			0.011484452742024587
IMPLNKGAEL	10	Unmodified	_IMPLNKGAEL_					0	0	0			REV__ENSG00000007314|ENST00000435607|SCN4A	REV__ENSG00000007314|ENST00000435607|SCN4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3163452148438	2	543.30481	1084.59507	0.4437	0.00024106	1.3843	0.00075208	1.828	0.00099314	543.3054273445589	33.788	0.49251	33.855	33.607	34.099	0.066704					23	17	2	0	0	0	0.3001	1	6571	6571		20.415	1.1575	1	198830	+		15030	13384	8496	8496	19002	19002					0.05615242776730156
IMPWTWWFGV	10	Unmodified	_IMPWTWWFGV_					0	0	0		ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.88623046875	3	441.551205	1321.63179	-0.16088	-7.1036E-05	-2.6882	-0.001187	-2.849	-0.001258	441.54957619999755	13.972	0.17654	13.972	13.847	14.024	0					7	5	2	0	0	0	0.32137	1	548	548		1.7423	0.63252	1	38898			15031	5806	8497	8497	19003	19003					-0.016164606067377463
IMPWTWWFGV	10	Unmodified	_IMPWTWWFGV_					0	0	0		ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	441.551205	1321.63179	-0.24056	-0.00010622	-2.399	-0.0010593	-2.6396	-0.0011655	441.5512422340123	14.094	0.14985	13.99	13.873	14.023	-0.10466	0.0087929	0.00022476	NaN	1.7423	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48859			15032	5806	8497	8497							-0.016164606067377463
IMQLRVTFAF	10	Unmodified	_IMQLRVTFAF_					0	0	0			REV__ENST00000526991.2_1_18:11852584-11852803:+|nuORF	REV__ENST00000526991.2_1_18:11852584-11852803:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.55572509765625	3	409.230243	1224.6689	0.10484	4.2902E-05	2.1772	0.00089099	2.2821	0.00093389	409.2303450404392	43.796	0.49864	43.88	43.522	44.02	0.083992					27	18	2	0	0	0	0.32033	1	9566	9566		2.086	1.3883	1	267360	+		15033	21969	8498	8498	19004	19004					0.0655521093904099
IMQQITGKE	9	Unmodified	_IMQQITGKE_					0	0	0			REV__ENST00000451029.5_1_7:89905415-89916830:+|nuORF	REV__ENST00000451029.5_1_7:89905415-89916830:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2684326171875	2	524.278792	1046.54303	-0.66595	-0.00034914	0.15367	8.0565E-05	-0.51228	-0.00026858	524.2788026644038	35.11	0.98645	35.11	34.618	35.604	0					101	35	4	0	0	0	0.12642	1	7118	7118		34.402	1.616	1	1593900	+		15034	14487	8499	8499	19005	19005					0.02162079362960867
IMRAFGGL	8	Unmodified	_IMRAFGGL_					0	0	0		L1ME3A_dup1407|chr2:34736108-34736263:-|1.5285646076903014|0.1479222107584751|3.37|525.0|7|3|sense	L1ME3A_dup1407|chr2:34736108-34736263:-|1.5285646076903014|0.1479222107584751|3.37|525.0|7|3|sense	L1ME3A_dup1407|chr2:34736108-34736263:-|1.5285646076903014|0.1479222107584751|3.37|525.0|7|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.21075439453125	2	432.741648	863.468743	-0.005805	-2.5121E-06	1.0469	0.00045304	1.0411	0.00045053	432.7421535964985	66.82	1.2997	66.82	66.099	67.398	0					68	45	2	0	0	0	0.34297	1	16691	16691		6.3541	0	1	136530			15035	12461	8500	8500	19006	19006					0.031547810621191275
IMRAFGGL	8	Unmodified	_IMRAFGGL_					0	0	0		L1ME3A_dup1407|chr2:34736108-34736263:-|1.5285646076903014|0.1479222107584751|3.37|525.0|7|3|sense	L1ME3A_dup1407|chr2:34736108-34736263:-|1.5285646076903014|0.1479222107584751|3.37|525.0|7|3|sense	L1ME3A_dup1407|chr2:34736108-34736263:-|1.5285646076903014|0.1479222107584751|3.37|525.0|7|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.2107238769531	2	432.741648	863.468743	-0.050656	-2.1921E-05	0.9609	0.00041582	0.91024	0.0003939	432.7420471174645	66.316	0.42205	66.303	66.063	66.485	-0.013596					23	15	2	0	0	0	0.34297	1	16622	16622		6.3541	0	1	118030			15036	12461	8500	8500	19007	19007					0.031547810621191275
IMSITFGSVF	10	Oxidation (M)	_IM(Oxidation (M))SITFGSVF_		IM(1)SITFGSVF		IM(48)SITFGSVF	0	0	1			REV__ENSG00000182083|ENST00000319423|OR6B2	REV__ENSG00000182083|ENST00000319423|OR6B2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.291259765625	2	559.283543	1116.55253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.045	1	66.129	65.629	66.629	0.083832								0	0	0	0.13233	1	16501	16501		48.346	14.243	1		+		15037	18176	8501	8501	19008	19008		1005			-0.0010815235150403169
IMSTIFVIK	9	Unmodified	_IMSTIFVIK_					0	0	0			REV__ENST00000529637.5_1_1:22083176-22084208:-|nuORF	REV__ENST00000529637.5_1_1:22083176-22084208:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3048095703125	2	526.314646	1050.61474	0.36596	0.00019261	-1.8508	-0.00097409	-1.4848	-0.00078148	526.3136840424407	57.645	0.50825	57.627	57.285	57.793	-0.017197					42	18	3	0	0	0	0.12846	1	13948	13948		34.102	17.16	1	1009600	+		15038	21998	8502	8502	19009	19009					0.09145618787465537
IMTRREPSL	9	Unmodified	_IMTRREPSL_					0	0	0		ENST00000377669.6_1_13:74269403-74269595:-|nuORF	ENST00000377669.6_1_13:74269403-74269595:-|nuORF	ENST00000377669.6_1_13:74269403-74269595:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8062133789062	2	551.805508	1101.59646	0.56659	0.00031265	0.53682	0.00029622	1.1034	0.00060886	551.8056748285894	64.383	1.182	64.476	64.012	65.194	0.09288					93	43	3	0	0	0	0.18208	1	15990	15990		26.268	1.5943	1	1015500			15039	9941	8503	8503	19010	19010					0.04972876865485887
IMTRREPSL	9	Unmodified	_IMTRREPSL_					0	0	0		ENST00000377669.6_1_13:74269403-74269595:-|nuORF	ENST00000377669.6_1_13:74269403-74269595:-|nuORF	ENST00000377669.6_1_13:74269403-74269595:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	551.805508	1101.59646	0.58453	0.00032255	0.63284	0.0003492	1.2174	0.00067175	551.8057047026017	64.42	0.93435	64.42	64.053	64.988	0	-0.032546	-2.0374E-05	NaN	26.268	81	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1109900			15040	9941	8503	8503							0.04972876865485887
IMTRREPSL	9	Unmodified	_IMTRREPSL_					0	0	0		ENST00000377669.6_1_13:74269403-74269595:-|nuORF	ENST00000377669.6_1_13:74269403-74269595:-|nuORF	ENST00000377669.6_1_13:74269403-74269595:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	551.805508	1101.59646	0.56659	0.00031265	0.53682	0.00029622	1.1034	0.00060886	551.8056748285894	64.383	1.182	64.476	64.012	65.194	0.09288	0.023821	-0.00012635	NaN	26.268	93	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1015500			15041	9941	8503	8503							0.04972876865485887
IMVEMMLL	8	Unmodified	_IMVEMMLL_					0	0	0		nc|ENSG00000047346|Q32MH5-2|ATOSA;ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-3|ATOSA	nc|ENSG00000047346|Q32MH5-2|ATOSA	nc|ENSG00000047346|Q32MH5-2|ATOSA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2646789550781	2	490.254885	978.495217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.442	1	91.442	90.942	91.942	0								0	0	0	0.36961	1	24282	24282		5.7604	2.1639	1				15042	629	8504	8504	19011	19011					0.005109658469223177
IMVTLAIYHV	10	Unmodified	_IMVTLAIYHV_					0	0	0		nc|ENSG00000125869|Q9UJQ1-2|LAMP5;ENSG00000125869|ENST00000246070|LAMP5	nc|ENSG00000125869|Q9UJQ1-2|LAMP5	nc|ENSG00000125869|Q9UJQ1-2|LAMP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8452758789062	2	580.330827	1158.6471	0.36951	0.00021444	2.0223	0.0011736	2.3918	0.001388	580.3339039215363	88.206	0.413	88.295	88.107	88.52	0.089195					45	19	3	0	0	0	0.39935	1	23284	23284		3.5965	0.31518	1	86337			15043	3241	8505	8505	19012	19012					0.0741240619047403
IMWKFLTN	8	Unmodified	_IMWKFLTN_					0	0	0			REV__nc|ENSG00000134363|P19883-2|FST	REV__nc|ENSG00000134363|P19883-2|FST	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2576904296875	2	526.783513	1051.55247	0.53815	0.00028349	-2.7259	-0.001436	-2.1878	-0.0011525	527.2837994384104	16.859	0.18175	16.797	16.703	16.885	-0.062534					9	6	2	0	0	0	0.34419	1	1458	1458		1.8442	0.51471	1	32889	+		15044	15669	8506	8506	19013	19013					0.0287589243914681
IMWKFLTN	8	Unmodified	_IMWKFLTN_					0	0	0			REV__nc|ENSG00000134363|P19883-2|FST	REV__nc|ENSG00000134363|P19883-2|FST	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	526.783513	1051.55247	0.24839	0.00013085	-3.059	-0.0016114	-2.8106	-0.0014806	526.7815503168238	16.889	0.080139	16.775	16.723	16.803	-0.11434	-0.010921	-0.00022885	NaN	1.8442	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43719	+		15045	15669	8506	8506							0.0287589243914681
IMWPIIAK	8	Unmodified	_IMWPIIAK_					0	0	0		nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY;ENST00000591753.1_2_17:40715869-40717983:+|nuORF	nc|ENSG00000068120|Q13057-2|COASY	nc|ENSG00000068120|Q13057-2|COASY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.29071044921875	2	486.290974	970.567395	-0.098292	-4.7798E-05	-0.34941	-0.00016992	-0.4477	-0.00021771	486.290722652264	12.652	0.28854	12.652	12.526	12.815	0					16	9	2	0	0	0	0.45169	1	203	203		5.2307	5.2307	1	155520			15046	877	8507	8507	19014	19014					0.08093384307164797
IMYIFFKK	8	Unmodified	_IMYIFFKK_					0	0	0		ENST00000373670.5_1_9:125611733-125611871:-|nuORF	ENST00000373670.5_1_9:125611733-125611871:-|nuORF	ENST00000373670.5_1_9:125611733-125611871:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2953491210938	2	545.311906	1088.60926	0.38841	0.0002118	-0.0060899	-3.3209E-06	0.38232	0.00020848	545.3118717704809	15.776	0.99331	15.666	15.151	16.144	-0.10981					73	33	4	0	0	0	0.46491	1	1253	1253		0.69038	0	1	526870			15047	9875	8508	8508	19015	19015					0.06849939995686327
IMYIYPNF	8	Unmodified	_IMYIYPNF_					0	0	0			REV__ENST00000451653.5_2_3:42589735-42590053:-|nuORF	REV__ENST00000451653.5_2_3:42589735-42590053:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2783203125	2	530.762246	1059.50994	0.5931	0.0003148	-0.6146	-0.00032621	-0.021497	-1.141E-05	531.2637865418625	89.734	0.3062	89.733	89.659	89.965	-0.00080872					47	28	2	0	0	0	0.34185	1	23761	23761		10.183	0	1	85464	+		15048	21121	8509	8509	19016	19016					-0.01743502689100751
IMYKERKLI	9	Unmodified	_IMYKERKLI_					0	0	0			REV__ENST00000370763.5_1_1:78470960-78478740:+|nuORF	REV__ENST00000370763.5_1_1:78470960-78478740:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.2492065429688	2	597.357376	1192.7002	0.83365	0.00049799	-2.4712	-0.0014762	-1.6376	-0.00097821	597.3559772930545	54.688	0.51749	54.688	54.374	54.891	0					30	18	2	0	0	0	0.24739	1	12915	12915		8.5933	1.8701	1	231990	+		15049	20389	8510	8510	19017	19017					0.11155783973163125
IMYKERKLI	9	Unmodified	_IMYKERKLI_					0	0	0			REV__ENST00000370763.5_1_1:78470960-78478740:+|nuORF	REV__ENST00000370763.5_1_1:78470960-78478740:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.2493896484375	2	597.357376	1192.7002	0.77323	0.00046189	-2.1412	-0.001279	-1.3679	-0.00081714	597.3561443398435	54.998	0.4525	54.982	54.575	55.028	-0.015923					24	16	2	0	0	0	0.25417	1	12984	12984		4.756	3.1034	1	254360	+		15050	20389	8510	8510	19018	19018					0.11155783973163125
IMYVIESVW	9	Unmodified	_IMYVIESVW_					0	0	0			REV__ENST00000504002.1_1_4:70715089-70723308:-|nuORF	REV__ENST00000504002.1_1_4:70715089-70723308:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.295166015625	2	570.293911	1138.57327	0.43892	0.00025031	0.98113	0.00055953	1.4201	0.00080985	570.2945474590931	53.255	1.493	53.311	52.772	54.265	0.056259					136	55	4	0	0	0	0.193	1	12692	12692		24.674	3.1369	1	5309900	+		15051	14633	8511	8511	19019	19019					0.009524380281618505
INAIVRSPRG	10	Unmodified	_INAIVRSPRG_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.8248291015625	2	541.825089	1081.63563	0.24712	0.0001339	-0.21887	-0.00011859	0.02825	1.5307E-05	541.8249517590007	28.218	0.55525	28.214	27.882	28.438	-0.0042572					29	19	2	0	0	0	0.38773	1	4901	4901		5.7319	5.7319	1	123330			15052	4426	8512	8512	19020	19020					0.09807345211356733
INAKSRAEAAL	11	Unmodified	_INAKSRAEAAL_					0	0	0		nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|539|37.17|0.3|6.96|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1;ENST00000493660.5_1_17:38792069-38802054:-|nuORF;ENST00000469334.5_1_17:38788437-38802054:-|nuORF	nc|ENSG00000073584|Q969G3-6|SMARCE1	nc|ENSG00000073584|Q969G3-6|SMARCE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.32763671875	2	572.327662	1142.64077	0.14422	8.2543E-05	-0.64207	-0.00036748	-0.49785	-0.00028493	572.3273409851398	25.98	0.31358	25.941	25.813	26.126	-0.038671					16	10	2	0	0	0	0.31508	1	4234	4234		20.871	7.2563	1	104210			15053	141	8513	8513	19021	19021					0.07515604283344146
INAKSRAEAAL	11	Unmodified	_INAKSRAEAAL_					0	0	0		nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|539|37.17|0.3|6.96|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1;ENST00000493660.5_1_17:38792069-38802054:-|nuORF;ENST00000469334.5_1_17:38788437-38802054:-|nuORF	nc|ENSG00000073584|Q969G3-6|SMARCE1	nc|ENSG00000073584|Q969G3-6|SMARCE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3289794921875	2	572.327662	1142.64077	0.17575	0.00010059	0.21987	0.00012584	0.39562	0.00022642	572.3279573167346	26.042	0.39934	26.019	25.867	26.266	-0.022238					22	14	2	0	0	0	0.40701	1	4251	4251		10.315	0.16466	1	83583			15054	141	8513	8513	19022	19022					0.07515604283344146
INAKSRAEAAL	11	Unmodified	_INAKSRAEAAL_					0	0	0		nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|539|37.17|0.3|6.96|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1;ENST00000493660.5_1_17:38792069-38802054:-|nuORF;ENST00000469334.5_1_17:38788437-38802054:-|nuORF	nc|ENSG00000073584|Q969G3-6|SMARCE1	nc|ENSG00000073584|Q969G3-6|SMARCE1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	572.327662	1142.64077	0.064871	3.7128E-05	-0.10517	-6.0192E-05	-0.0403	-2.3065E-05	572.3278899739317	25.911	0.36239	25.911	25.798	26.161	0	-0.04618	0.00013549	NaN	20.871	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109780			15055	141	8513	8513							0.07515604283344146
INCLKKYPKA	10	Unmodified	_INCLKKYPKA_					0	0	0		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3447265625	2	589.341726	1176.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.63	1	111.63	111.13	112.13	0								0	0	0	0.38166	1	29027	29027		1.4819	0.28856	1				15056	3928	8514	8514	19023	19023					0.08763210939059718
INDILKHF	8	Unmodified	_INDILKHF_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.3136901855469	2	500.284734	998.554916	0.30343	0.0001518	-1.9164	-0.00095876	-1.613	-0.00080696	500.2839788383234	25.077	0.33645	25.077	24.902	25.239	0					19	11	3	0	0	0	0.31617	1	3928	3928		20.454	0	1	68680			15057	644	8515	8515	19024	19024					0.05558064168474175
INDKRKKQ	8	Unmodified	_INDKRKKQ_					0	0	0		nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	nc|ENSG00000241119|O60656-2|UGT1A9	nc|ENSG00000241119|O60656-2|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3115234375	2	515.311815	1028.60908	0.031627	1.6298E-05	-0.25352	-0.00013064	-0.22189	-0.00011434	515.3115729767983	15.148	0.56041	15.039	14.847	15.408	-0.10981					43	19	3	0	0	0	0.4354	1	923	923		10.824	0.75	1	323610			15058	12963	8516	8516	19025	19025					0.09591656320048969
INDTDTACTF	10	Unmodified	_INDTDTACTF_					0	0	0			REV__ENSG00000156049|ENST00000341700|GNA14	REV__ENSG00000156049|ENST00000341700|GNA14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.3238525390625	2	550.731871	1099.44919	0.39449	0.00021726	-0.13488	-7.4281E-05	0.25962	0.00014298	550.7318871345927	59.339	0.44574	59.43	59.211	59.657	0.091305					21	15	2	0	0	0	0.31143	1	14471	14471		12.241	1.4167	1	218310	+		15059	16727	8517	8517	19026	19026					-0.09655684529980135
INDVVTQNGF	10	Unmodified	_INDVVTQNGF_					0	0	0			REV__nc|ENSG00000054796|Q9Y5K1-2|SPO11	REV__nc|ENSG00000054796|Q9Y5K1-2|SPO11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3163452148438	2	553.77747	1105.54039	0.51761	0.00028664	2.2567	0.0012497	2.7743	0.0015364	553.7799400079435	64.003	0.46767	63.994	63.822	64.289	-0.0095291					30	16	3	0	0	0	0.31358	1	15822	15822		9.3831	0	1	248030	+		15060	13587	8518	8518	19027	19027					-0.008160527703466869
INHDLRHRVT	10	Unmodified	_INHDLRHRVT_					0	0	0		nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF;nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1	nc|ENSG00000188026|Q5EBL4-3|RILPL1	nc|ENSG00000188026|Q5EBL4-3|RILPL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.8499145507812	2	630.849627	1259.6847	0.036274	2.2883E-05	0.68255	0.00043059	0.71882	0.00045347	630.8499546668488	106.69	0.40962	106.68	106.5	106.91	-0.0060501					130	61	3	0	0	0	0.39935	1	28205	28205		3.5965	3.5965	1	1526000			15061	7726	8519	8519	19028	19028					0.06524633500316668
INHSQSLALV	10	Unmodified	_INHSQSLALV_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.75146484375	2	541.303655	1080.59276	0.77642	0.00042028	1.1536	0.00062443	1.93	0.0010447	541.3040474981037	60.486	0.4328	60.475	60.273	60.706	-0.01141					25	15	2	0	0	0	0.31039	1	14776	14776		13.042	13.042	1	548180			15062	4431	8520	8520	19029	19029					0.05568530363279933
INHTGTLKKKK	11	Unmodified	_INHTGTLKKKK_					0	0	0		ENST00000446401.1_1_2:114589148-114600928:-|nuORF	ENST00000446401.1_1_2:114589148-114600928:-|nuORF	ENST00000446401.1_1_2:114589148-114600928:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.9395751953125	3	423.266345	1266.7772	0.062509	2.6458E-05	-3.8685	-0.0016374	-3.806	-0.001611	423.26488209225244	42.098	0.31409	42.183	42.093	42.407	0.085197					11	10	2	0	0	0	0.33085	1	9113	9113		8.2864	2.503	1	102720			15063	10594	8521	8521	19030	19030					0.15448718513835047
ININLKKQLE	10	Unmodified	_ININLKKQLE_					0	0	0			REV__ENST00000475640.1_1_3:122437249-122439770:+|nuORF	REV__ENST00000475640.1_1_3:122437249-122439770:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2470397949219	3	404.915201	1211.72377	-0.1474	-5.9684E-05	-2.0497	-0.00082996	-2.1971	-0.00088964	404.9155179217999	16.905	2.0566	16.905	16.242	18.299	0					252	71	5	0	0	0	0.36279	1	1390	1390		10.315	2.3698	1	1214500	+		15064	17766	8522	8522	19031	19031					0.12637921011332764
INIVHPKL	8	Unmodified	_INIVHPKL_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1;PSAT1|p.G218Lfs*87|1|0.05|ENSG00000135069|chr9:78308494-78308495|-/CTTAAGAA|frameshift_variant	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2683410644531	2	467.297645	932.580737	-0.15126	-7.0683E-05	0.039852	1.8623E-05	-0.11141	-5.206E-05	467.29751591135715	42.153	0.45464	42.153	41.9	42.355	0					17	15	2	0	0	0	0.20083	1	9138	9138		61.357	13.012	1	404220			15065	3842	8523	8523	19032	19032					0.11174958410742875
INIVHPKL	8	Unmodified	_INIVHPKL_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1;PSAT1|p.G218Lfs*87|1|0.05|ENSG00000135069|chr9:78308494-78308495|-/CTTAAGAA|frameshift_variant	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.6023254394531	2	467.297645	932.580737	0.19395	9.0631E-05	-0.49759	-0.00023252	-0.30364	-0.00014189	467.297235990423	41.928	0.50327	42.018	41.853	42.357	0.090248					26	17	2	0	0	0	0.10754	1	9082	9082		78.149	13.913	1	374960			15066	3842	8523	8523	19033	19033					0.11174958410742875
INIVHPKL	8	Unmodified	_INIVHPKL_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1;PSAT1|p.G218Lfs*87|1|0.05|ENSG00000135069|chr9:78308494-78308495|-/CTTAAGAA|frameshift_variant	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.26837158203125	2	467.297645	932.580737	0.43563	0.00020357	-0.35775	-0.00016718	0.077877	3.6392E-05	467.29731501131386	41.884	0.42043	41.98	41.814	42.235	0.096622					24	14	2	0	0	0	0.052835	1	9059	9059		96.285	32.048	1	382460			15067	3842	8523	8523	19034	19034					0.11174958410742875
INKHRGIL	8	Unmodified	_INKHRGIL_					0	0	0			REV__ENSG00000160867|ENST00000292408|FGFR4	REV__ENSG00000160867|ENST00000292408|FGFR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.79833984375	2	475.798343	949.582134	-0.0016108	-7.6643E-07	-0.07785	-3.7041E-05	-0.079461	-3.7807E-05	475.7982003658141	26.19	0.62829	26.19	25.9	26.528	0					50	21	3	0	0	0	0.42446	1	4233	4233		14.582	0	1	306940	+		15068	16920	8524	8524	19035	19035					0.10532592499521343
INKMHKVL	8	Unmodified	_INKMHKVL_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.7899169921875	2	491.796955	981.579357	0.32757	0.0001611	-1.5068	-0.00074104	-1.1792	-0.00057994	491.79579574214006	43.357	1.3845	43.357	42.871	44.255	0					98	50	3	0	0	0	0.42758	1	9559	9559		13.508	1.8676	1	331630	+		15069	15965	8525	8525	19036	19036					0.08783001050358052
INKQNLILRNQ	11	Unmodified	_INKQNLILRNQ_					0	0	0		nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3;ENST00000589040.1_1_19:12963033-12975643:+|nuORF;ENST00000467367.5_1_1:46487726-46489696:+|nuORF;ENSG00000105613|ENST00000251472|MAST1;MAST4|p.S850Ffs*20|1|0.24|ENSG00000069020|chr5:67142153-67142154|-/CTTTAGACTGGAA|frameshift_variant;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4;ENSG00000086015|ENST00000361297|MAST2;nc|ENSG00000086015|Q6P0Q8-2|MAST2	nc|ENSG00000099308|O60307|MAST3;MAST4|p.S850Ffs*20|1|0.24|ENSG00000069020|chr5:67142153-67142154|-/CTTTAGACTGGAA|frameshift_variant;ENSG00000086015|ENST00000361297|MAST2	nc|ENSG00000099308|O60307|MAST3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2538757324219	3	451.936887	1352.78883	-0.047634	-2.1527E-05	0.053469	2.4165E-05	0.0058353	2.6372E-06	451.9368818275891	15.077	0.41102	14.968	14.765	15.176	-0.10981					25	14	2	0	0	0	0.33334	1	866	866		1.2148	0.51716	1	71582			15070	1482;1273;898	8526	8526	19037	19037					0.12654915537200395
INKSINVFL	9	Unmodified	_INKSINVFL_					0	0	0			REV__ENSG00000109323|ENST00000647097|MANBA	REV__ENSG00000109323|ENST00000647097|MANBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.8054809570312	2	524.313492	1046.61243	0.74714	0.00039174	-0.20111	-0.00010544	0.54603	0.00028629	524.3131689103066	64.187	0.78399	64.187	63.915	64.699	0					53	28	3	0	0	0	0.24688	1	15874	15874		14.838	0	1	683360	+		15071	14636	8527	8527	19038	19038					0.09098906374038052
INLLFQPGIL	10	Unmodified	_INLLFQPGIL_					0	0	0			REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3265991210938	2	564.344792	1126.67503	0.22982	0.0001297	-0.19944	-0.00011255	0.030384	1.7147E-05	564.3446955617075	67.153	0.45903	67.153	66.909	67.368	0					28	15	2	0	0	0	0.30958	1	16876	16876		19.257	2.1441	1	175180	+		15072	21798	8528	8528	19039	19039					0.11676052442226137
INLNSFFTQF	10	Unmodified	_INLNSFFTQF_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.23236083984375	3	410.876634	1229.60807	0.047182	1.9386E-05	-0.12538	-5.1514E-05	-0.078194	-3.2128E-05	410.8767474396079	26.394	0.45683	26.355	26.235	26.692	-0.038671					20	15	2	0	0	0	0.31899	1	4324	4324		7.4771	1.7452	1	43420			15073	6752	8529	8529	19040	19040					0.002453971604609251
INLTPSVRK	9	Unmodified	_INLTPSVRK_					0	0	0			REV__ENSG00000181961|ENST00000314721|OR4A16	REV__ENSG00000181961|ENST00000314721|OR4A16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2987670898438	2	514.316566	1026.61858	0.19589	0.00010075	0.070126	3.6067E-05	0.26602	0.00013682	514.3164745567466	24.602	1.0573	24.54	24.217	25.274	-0.062593					57	36	2	0	0	0	0.30824	1	3965	3965		7.609	0.88579	1	134780	+		15074	18173	8530	8530	19041	19041					0.10633424605566688
INMTSDCSSF	10	Unmodified	_INMTSDCSSF_					0	0	0		ENSG00000187210|ENST00000376730|GCNT1	ENSG00000187210|ENST00000376730|GCNT1	ENSG00000187210|ENST00000376730|GCNT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3004150390625	2	552.720449	1103.42635	0.16879	9.3293E-05	-1.9068	-0.0010539	-1.738	-0.00096062	552.7196172354085	64.956	0.33227	64.945	64.69	65.022	-0.011337					14	11	2	0	0	0	0.31691	1	16176	16176		5.7319	0	1	112890			15075	7670	8531	8531	19042	19042					-0.1212302691910736
INNFLLAGK	9	Unmodified	_INNFLLAGK_					0	0	0			REV__nc|ENSG00000142583|P22732-2|SLC2A5	REV__nc|ENSG00000142583|P22732-2|SLC2A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.79486083984375	2	495.292559	988.570566	0.26751	0.0001325	0.88433	0.000438	1.1518	0.0005705	495.29251715248756	25.97	1.0601	25.948	25.524	26.584	-0.022236					76	37	4	0	0	0	0.21303	1	4161	4161		21.747	0	1	534480	+		15076	16127	8532	8532	19043	19043					0.07582350685527217
INNGLTQKM	9	Oxidation (M)	_INNGLTQKM(Oxidation (M))_		INNGLTQKM(1)		INNGLTQKM(59)	0	0	1			REV__ENST00000560489.2_1_15:49658263-49658881:-|nuORF	REV__ENST00000560489.2_1_15:49658263-49658881:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.784423828125	2	517.768591	1033.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.541	1	33.541	33.041	34.041	0								0	0	0	0.057388	1	6517	6517		58.679	16.584	1		+		15077	22296	8533	8533	19044	19044		1009			0.007209087031696981
INNGLTQKM	9	Oxidation (M)	_INNGLTQKM(Oxidation (M))_		INNGLTQKM(1)		INNGLTQKM(42)	0	0	1			REV__ENST00000560489.2_1_15:49658263-49658881:-|nuORF	REV__ENST00000560489.2_1_15:49658263-49658881:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7848510742188	2	517.768591	1033.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.372	1	33.438	32.938	33.938	0.06636								0	0	0	0.11932	1	6466	6466		41.84	14.956	1		+		15078	22296	8533	8533	19045	19045		1009			0.007209087031696981
INPHGAVK	8	Unmodified	_INPHGAVK_					0	0	0			REV__ENST00000521603.5_1_8:91031140-91049169:+|nuORF	REV__ENST00000521603.5_1_8:91031140-91049169:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.2577819824219	2	418.24287	834.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.949	1	26.928	26.428	27.428	-0.021412								0	0	0	0.36336	1	4511	4511		8.5933	0	1		+		15079	14404	8534	8534	19046	19046					0.047329527914257596
INPHPALQK	9	Unmodified	_INPHPALQK_					0	0	0			REV__ENST00000492302.1_1_1:20966360-20975203:+|nuORF	REV__ENST00000492302.1_1_1:20966360-20975203:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.28106689453125	2	509.295633	1016.57671	0.33851	0.0001724	-1.6049	-0.00081736	-1.2664	-0.00064496	509.29496613813626	30.06	0.70876	30.087	29.699	30.408	0.026222					40	24	3	0	0	0	0.25314	1	5444	5444		15.847	2.3393	1	259750	+		15080	16825	8535	8535	19047	19047					0.06908868917025757
INPRFSPSI	9	Unmodified	_INPRFSPSI_					0	0	0		ENST00000529847.1_1_11:6501462-6502550:-|nuORF	ENST00000529847.1_1_11:6501462-6502550:-|nuORF	ENST00000529847.1_1_11:6501462-6502550:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2659301757812	2	515.787641	1029.56073	0.36596	0.00018876	-0.070668	-3.645E-05	0.29529	0.00015231	515.7877426719149	59.311	0.53479	59.297	59.031	59.566	-0.014267					47	18	3	0	0	0	0.2322	1	14487	14487		10.074	2.7847	1	842370			15081	11608	8536	8536	19048	19048					0.047131626801501625
INPVKRRLVG	10	Unmodified	_INPVKRRLVG_					0	0	0			REV__ENST00000327619.9_1_20:45816714-45817023:+|nuORF	REV__ENST00000327619.9_1_20:45816714-45817023:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3721923828125	2	576.372207	1150.72986	0.1196	6.8935E-05	0.31897	0.00018384	0.43857	0.00025278	576.3722910761951	25.261	0.67816	25.205	24.972	25.65	-0.055931					54	23	3	0	0	0	0.39745	1	4051	4051		3.9444	0	1	403980	+		15082	20010	8537	8537	19049	19049					0.16052484033502878
INQAGPKR	8	Unmodified	_INQAGPKR_					0	0	0		ENST00000302351.8_1_5:73936805-73937162:-|nuORF	ENST00000302351.8_1_5:73936805-73937162:-|nuORF	ENST00000302351.8_1_5:73936805-73937162:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.5690612792969	2	442.259051	882.503549	0.17054	7.5424E-05	-1.3807	-0.00061063	-1.2102	-0.0005352	442.25823451002213	16.573	1.2503	16.51	15.607	16.857	-0.062532					73	43	3	0	0	0	0.34218	1	1326	1326		9.3474	1.4373	1	190890			15083	9234	8538	8538	19050	19050					0.05759740194423557
INQLRNRRYII	11	Unmodified	_INQLRNRRYII_					0	0	0		ENSG00000183476|ENST00000328828|SH2D7	ENSG00000183476|ENST00000328828|SH2D7	ENSG00000183476|ENST00000328828|SH2D7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.9588928222656	3	486.959915	1457.85791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.521	1	92.521	92.021	93.021	0.00046539								0	0	0	0.3674	1	24606	24606		4.4062	0.56024	1				15084	7369	8539	8539	19051	19051					0.14729999556743678
INQYKIIVE	9	Unmodified	_INQYKIIVE_					0	0	0			REV__nc|ENSG00000185261|Q8IV33|KIAA0825	REV__nc|ENSG00000185261|Q8IV33|KIAA0825	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3245239257812	2	560.324057	1118.63356	0.38496	0.0002157	0.65429	0.00036661	1.0392	0.00058231	560.3245511545834	76.983	0.78323	77.038	76.758	77.541	0.055412					52	27	3	0	0	0	0.16284	1	19858	19858		30.637	0	1	449470	+		15085	18367	8540	8540	19052	19052					0.07898871682914432
INQYKIIVE	9	Unmodified	_INQYKIIVE_					0	0	0			REV__nc|ENSG00000185261|Q8IV33|KIAA0825	REV__nc|ENSG00000185261|Q8IV33|KIAA0825	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.3244018554688	2	560.324057	1118.63356	0.55086	0.00030866	0.36674	0.00020549	0.9176	0.00051415	560.324256757747	77.035	0.48369	77.003	76.804	77.287	-0.031334					40	17	3	0	0	0	0.16284	1	19849	19849		30.637	4.3684	1	287480	+		15086	18367	8540	8540	19053	19053					0.07898871682914432
INRLVAAVAF	10	Unmodified	_INRLVAAVAF_					0	0	0			REV__nc|ENSG00000116120|Q9NSD9-2|FARSB	REV__nc|ENSG00000116120|Q9NSD9-2|FARSB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7684326171875	2	537.326934	1072.63931	0.45912	0.0002467	-0.36705	-0.00019723	0.09207	4.9472E-05	537.3269662310181	42.882	0.60533	42.882	42.652	43.257	0					52	21	4	0	0	0	0.318	1	9319	9319		7.2892	6.6877	1	436800	+		15087	14910	8541	8541	19054	19054					0.10590014985223206
INRLVAAVAF	10	Unmodified	_INRLVAAVAF_					0	0	0			REV__nc|ENSG00000116120|Q9NSD9-2|FARSB	REV__nc|ENSG00000116120|Q9NSD9-2|FARSB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	537.326934	1072.63931	0.23062	0.00012392	0.31493	0.00016922	0.54555	0.00029314	537.327062359897	42.689	0.54438	42.774	42.514	43.058	0.085201	-0.0010251	0.00021783	NaN	7.2892	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	480660	+		15088	14910	8541	8541							0.10590014985223206
INRLVAAVAF	10	Unmodified	_INRLVAAVAF_					0	0	0			REV__nc|ENSG00000116120|Q9NSD9-2|FARSB	REV__nc|ENSG00000116120|Q9NSD9-2|FARSB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	537.326934	1072.63931	0.3512	0.00018871	0.12444	6.6866E-05	0.47564	0.00025557	537.3269375802656	42.577	0.48581	42.668	42.499	42.985	0.091362	-0.10666	1.3128E-05	NaN	7.2892	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399060	+		15089	14910	8541	8541							0.10590014985223206
INRPATNI	8	Unmodified	_INRPATNI_					0	0	0			REV__DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant	REV__DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.7588806152344	2	449.758884	897.503215	0.42929	0.00019308	-0.34996	-0.0001574	0.079322	3.5676E-05	449.758610812913	37.002	1.0762	37.095	36.79	37.866	0.093014					88	39	3	0	0	0	0.25425	1	7637	7637		36.044	0	1	1439700	+		15090	13294	8542	8542	19055	19055					0.05036320474550848
INSDHNFNIQ	10	Unmodified	_INSDHNFNIQ_					0	0	0			REV__ENSG00000175322|ENST00000590202|ZNF519	REV__ENSG00000175322|ENST00000590202|ZNF519	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.3002319335938	2	601.283451	1200.55235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.27	1	54.254	53.754	54.754	-0.015923								0	0	0	0.33119	1	12870	12870		22.736	3.4793	1		+		15091	17886	8543	8543	19056	19056					-0.039904360271521
INSHRKLS	8	Unmodified	_INSHRKLS_					0	0	0			REV__ENSG00000185798|ENST00000332629|WDR53	REV__ENSG00000185798|ENST00000332629|WDR53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.3004150390625	2	477.777608	953.540663	0.14918	7.1274E-05	0.17944	8.573E-05	0.32861	0.000157	477.77740445550256	23.643	0.71057	23.57	23.313	24.024	-0.072559					44	24	2	0	0	0	0.32886	1	3646	3646		21.747	3.6117	1	110330	+		15092	18409	8544	8544	19057	19057					0.06203411740193587
INSKRAKQ	8	Unmodified	_INSKRAKQ_					0	0	0		ENSG00000139572|ENST00000267015|GPR84	ENSG00000139572|ENST00000267015|GPR84	ENSG00000139572|ENST00000267015|GPR84	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.78533935546875	2	472.785433	943.556313	-0.096376	-4.5565E-05	-0.27278	-0.00012897	-0.36916	-0.00017453	472.78531397927753	12.544	0.95639	12.448	12.295	13.252	-0.096607					64	32	3	0	0	0	0.45431	1	207	207		4.3292	4.3292	1	1219900			15093	4246	8545	8545	19058	19058					0.08227698257235261
INTKRYVLIY	10	Unmodified	_INTKRYVLIY_					0	0	0			REV__nc|ENSG00000134343|Q9BYT9-2|ANO3	REV__nc|ENSG00000134343|Q9BYT9-2|ANO3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8826293945312	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.862	1	97.924	97.424	98.424	0.061516								0	0	0	0.38166	1	26186	26186		1.4819	0.15237	1		+		15094	15668	8546	8546	19059	19059					0.11490511391002656
INTLKNMAL	9	Unmodified	_INTLKNMAL_					0	0	0			REV__ENST00000506579.5_1_5:140058520-140070889:-|nuORF	REV__ENST00000506579.5_1_5:140058520-140070889:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.29364013671875	2	509.291702	1016.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.663	1	12.663	12.163	13.163	0								0	0	0	0.23182	1	193	193		12.241	1.4167	1		+		15095	17580	8547	8547	19060	19060					0.06122973605260995
INVIQHINRA	10	Unmodified	_INVIQHINRA_					0	0	0		L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense;nc|ENSG999|O00370|L1_ORF2;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|9|1|sense;L1PA3_dup6831|chrX:106827828-106830948:+|1.112501382732906|0.4076652707632567|1.45|539.0|68|3|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3421020507812	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.839	1	94.839	94.339	95.339	0								0	0	0	0.37739	1	25306	25306		3.2813	0	1				15096	12439	8548	8548	19061	19061					0.09147016757151505
INVIQHINRA	10	Unmodified	_INVIQHINRA_					0	0	0		L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense;nc|ENSG999|O00370|L1_ORF2;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|9|1|sense;L1PA3_dup6831|chrX:106827828-106830948:+|1.112501382732906|0.4076652707632567|1.45|539.0|68|3|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3435668945312	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.872	1	97.872	97.372	98.372	0								0	0	0	0.37157	1	26181	26181		5.7319	2.4505	1				15097	12439	8548	8548	19062	19062					0.09147016757151505
INVIQHINRA	10	Unmodified	_INVIQHINRA_					0	0	0		L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense;nc|ENSG999|O00370|L1_ORF2;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|9|1|sense;L1PA3_dup6831|chrX:106827828-106830948:+|1.112501382732906|0.4076652707632567|1.45|539.0|68|3|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3436279296875	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.395	1	91.486	90.986	91.986	0.090668								0	0	0	0.37739	1	24258	24258		3.2813	0	1				15098	12439	8548	8548	19063	19063					0.09147016757151505
INVIQHINRA	10	Unmodified	_INVIQHINRA_					0	0	0		L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense;nc|ENSG999|O00370|L1_ORF2;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|9|1|sense;L1PA3_dup6831|chrX:106827828-106830948:+|1.112501382732906|0.4076652707632567|1.45|539.0|68|3|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3427124023438	2	589.343646	1176.67274	0.53659	0.00031623	-1.6027	-0.00094455	-1.0661	-0.00062831	589.3424349894842	92.188	0.83817	92.189	91.685	92.523	0.00046539					82	55	2	0	0	0	0.38773	1	24510	24510		5.7319	0	1	256790			15099	12439	8548	8548	19064	19064					0.09147016757151505
INVKNHIAK	9	Unmodified	_INVKNHIAK_					0	0	0			REV__ENSG00000168385|ENST00000391971|SEPTIN2	REV__ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2786865234375	2	518.816733	1035.61891	0.2726	0.00014143	-0.069446	-3.603E-05	0.20315	0.0001054	518.8167486225462	26.709	0.47937	26.671	26.37	26.85	-0.038671					27	16	2	0	0	0	0.25066	1	4382	4382		11.64	4.3511	1	214610	+		15100	17454	8549	8549	19065	19065					0.10252844325418664
INVKNHIAK	9	Unmodified	_INVKNHIAK_					0	0	0			REV__ENSG00000168385|ENST00000391971|SEPTIN2	REV__ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2786865234375	2	518.816733	1035.61891	0.48037	0.00024922	-0.72786	-0.00037763	-0.2475	-0.00012841	518.8164627184717	26.653	0.56412	26.631	26.439	27.003	-0.022236					40	19	3	0	0	0	0.2451	1	4386	4386		6.7232	0	1	165000	+		15101	17454	8549	8549	19066	19066					0.10252844325418664
INVLKDIISY	10	Unmodified	_INVLKDIISY_					0	0	0			REV__nc|ENSG00000049130|P21583-3|KITLG	REV__nc|ENSG00000049130|P21583-3|KITLG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3423461914062	2	589.344989	1176.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.51	1	114.53	114.03	115.03	0.016708								0	0	0	0.37739	1	29778	29778		3.2813	0.28607	1		+		15102	13553	8550	8550	19067	19067					0.09415427371436635
INVLQRHNLA	10	Unmodified	_INVLQRHNLA_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3427734375	2	589.343646	1176.67274	0.15567	9.1743E-05	-0.85543	-0.00050414	-0.69976	-0.0004124	589.3431447161827	98.141	0.13189	98.203	98.141	98.273	0.061523					19	14	2	0	0	0	0.40106	1	26275	26275		3.2813	0	1	137130	+		15103	13958	8551	8551	19068	19068					0.09147016757151505
INVPWNQV	8	Unmodified	_INVPWNQV_					0	0	0		nc|ENSG00000094631|Q9UBN7-2|HDAC6;ENSG00000094631|ENST00000334136|HDAC6;ENST00000486227.5_1_X:48672769-48673201:+|nuORF	nc|ENSG00000094631|Q9UBN7-2|HDAC6	nc|ENSG00000094631|Q9UBN7-2|HDAC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7818298339844	2	485.261259	968.507966	0.51762	0.00025118	-0.22234	-0.0001079	0.29528	0.00014329	485.26122620614154	55.14	0.61539	55.121	54.793	55.408	-0.019081					38	22	3	0	0	0	0.31934	1	13122	13122		24.674	12.142	1	478520			15104	1438	8552	8552	19069	19069					0.0224520461732709
IPAAERKQKH	10	Unmodified	_IPAAERKQKH_					0	0	0		ENST00000437111.1_1_10:52390343-52390514:-|nuORF	ENST00000437111.1_1_10:52390343-52390514:-|nuORF	ENST00000437111.1_1_10:52390343-52390514:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3429565429688	2	589.343646	1176.67274	0.38128	0.00022471	-0.79684	-0.00046961	-0.41556	-0.00024491	589.3432116322725	96.957	1.2457	96.952	96.744	97.99	-0.0055466					169	129	2	0	0	0	0.39009	1	26017	26017		5.2969	0.066215	1	176000			15105	10528	8553	8553	19070	19070					0.09147016757128767
IPAASLHFPLL	11	Unmodified	_IPAASLHFPLL_					0	0	0		ENST00000482791.1_1_1:151638429-151641724:+|nuORF	ENST00000482791.1_1_1:151638429-151641724:+|nuORF	ENST00000482791.1_1_1:151638429-151641724:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3223266601562	2	589.850242	1177.68593	0.25783	0.00015208	-0.023699	-1.3979E-05	0.23413	0.0001381	589.8499927554886	59.512	0.46052	59.512	59.215	59.675	0					25	15	2	0	0	0	0.32778	1	14420	14420		10.824	6.4947	1	280250			15106	11051	8554	8554	19071	19071					0.10419454816496909
IPAASLHFPLL	11	Unmodified	_IPAASLHFPLL_					0	0	0		ENST00000482791.1_1_1:151638429-151641724:+|nuORF	ENST00000482791.1_1_1:151638429-151641724:+|nuORF	ENST00000482791.1_1_1:151638429-151641724:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.322998046875	2	589.850242	1177.68593	0.53796	0.00031732	0.1044	6.1582E-05	0.64237	0.0003789	589.8499939967396	59.467	0.56451	59.455	59.199	59.763	-0.011486					33	19	3	0	0	0	0.33046	1	14411	14411		6.7232	6.7232	1	425480			15107	11051	8554	8554	19072	19072					0.10419454816496909
IPADLRII	8	Unmodified	_IPADLRII_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.7895202636719	2	455.789653	909.564752	0.10966	4.9982E-05	1.5163	0.00069109	1.6259	0.00074107	455.7895591574993	57.847	1.0044	57.847	57.495	58.5	0					86	35	4	0	0	0	0.18459	1	13965	13965		45.7	5.7499	1	845560			15108	5675	8555	8555	19073	19073					0.1063525217384722
IPADLRII	8	Unmodified	_IPADLRII_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.7896728515625	2	455.789653	909.564752	0.19253	8.7753E-05	-0.11042	-5.0328E-05	0.08211	3.7425E-05	455.7895223358201	57.705	0.86983	57.791	57.491	58.36	0.085621					52	31	2	0	0	0	0.18459	1	13918	13918		45.7	5.7499	1	736300			15109	5675	8555	8555	19074	19074					0.1063525217384722
IPADLRII	8	Unmodified	_IPADLRII_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.7896728515625	2	455.789653	909.564752	0.14134	6.4422E-05	0.0039518	1.8012E-06	0.14529	6.6224E-05	455.78957846707505	57.815	0.93985	57.798	57.443	58.383	-0.017197					61	34	2	0	0	0	0.18459	1	13973	13973		45.7	5.7499	1	881330			15110	5675	8555	8555	19075	19075					0.1063525217384722
IPAEGKKN	8	Unmodified	_IPAEGKKN_					0	0	0		nc|ENSG00000125454|Q9HC21-2|SLC25A19;ENSG00000125454|ENST00000416858|SLC25A19	nc|ENSG00000125454|Q9HC21-2|SLC25A19	nc|ENSG00000125454|Q9HC21-2|SLC25A19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2684020996094	2	428.747985	855.481417	-0.055498	-2.3795E-05	-0.17783	-7.6243E-05	-0.23332	-0.00010004	428.7478960657001	38.611	0.67656	38.702	38.427	39.104	0.090881					57	24	3	0	0	0	0.34185	1	7999	7999		10.183	0	1	548010			15111	3209	8556	8556	19076	19076					0.047895157259858934
IPAEGRVAL	9	Unmodified	_IPAEGRVAL_					0	0	0		ENSG00000137106|ENST00000318158|GRHPR;ENST00000377824.8_1_9:37422741-37431094:+|nuORF	ENSG00000137106|ENST00000318158|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.2770080566406	2	463.276909	924.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.641	1	39.641	39.141	40.141	0								0	0	0	0.080859	1	8381	8381		51.63	3.284	1				15112	4028	8557	8557	19077	19077					0.07397777651419801
IPAKLHNSL	9	Unmodified	_IPAKLHNSL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7981872558594	2	496.798009	991.581465	0.32476	0.00016134	0.067104	3.3337E-05	0.39187	0.00019468	496.7979060900493	26.895	0.85993	26.895	26.614	27.474	0					82	29	4	0	0	0	0.003673	2	4482	4482;4533		96.936	36.862	1	713850			15113	2669	8558	8558	19078;19079	19078					0.0853375305979398
IPAKLHNSL	9	Unmodified	_IPAKLHNSL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7981872558594	2	496.798009	991.581465	0.32283	0.00016038	0.087316	4.3378E-05	0.41014	0.00020376	496.79794016230204	26.887	1.0527	26.866	26.506	27.559	-0.021412					86	36	4	0	0	0	0.00051734	2	4490	4490;4539		128.93	50.204	1	739350			15114	2669	8558	8558	19080;19081	19080					0.0853375305979398
IPAKLHNSL	9	Unmodified	_IPAKLHNSL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7982482910156	2	496.798009	991.581465	0.41764	0.00020748	-0.023714	-1.1781E-05	0.39392	0.0001957	496.7978930981807	26.897	0.87423	26.886	26.625	27.499	-0.011562					79	30	4	0	0	0	2.5511E-05	2	4487	4487;4536		152.89	63.932	1	717640			15115	2669	8558	8558	19082;19083	19082					0.0853375305979398
IPAKPPVSF	9	Unmodified	_IPAKPPVSF_					0	0	0		nc|ENSG00000153066|Q6PKC3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3-3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.28411865234375	2	478.284203	954.553853	0.35657	0.00017054	0.10035	4.7995E-05	0.45691	0.00021853	478.2840686109663	48.382	0.9782	48.382	47.934	48.912	0					90	34	4	0	0	0	0.074552	1	11166	11166		43.772	15.286	1	2023900			15116	5057	8559	8559	19084	19084					0.07475849799573098
IPAKPPVSF	9	Unmodified	_IPAKPPVSF_					0	0	0		nc|ENSG00000153066|Q6PKC3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3-3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.755859375	2	478.284203	954.553853	0.61626	0.00029475	-0.16993	-8.1275E-05	0.44633	0.00021347	478.28397144606936	48.387	0.93611	48.434	47.945	48.881	0.04752					89	34	4	0	0	0	0.08298	1	11099	11099		51.63	15.586	1	1975100			15117	5057	8559	8559	19085	19085					0.07475849799573098
IPAKPPVSF	9	Unmodified	_IPAKPPVSF_					0	0	0		nc|ENSG00000153066|Q6PKC3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3-3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7558898925781	2	478.284203	954.553853	0.46159	0.00022077	0.0072297	3.4578E-06	0.46882	0.00022423	478.2840393709061	48.36	0.85273	48.404	48.011	48.864	0.04332					81	31	4	0	0	0	0.08298	1	11087	11087		60.074	24.03	1	2032100			15118	5057	8559	8559	19086	19086					0.07475849799573098
IPAKPPVSFF	10	Unmodified	_IPAKPPVSFF_					0	0	0		nc|ENSG00000153066|Q6PKC3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3-3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2981567382812	2	551.81841	1101.62227	0.39207	0.00021635	-1.2237	-0.00067526	-0.83163	-0.00045891	551.8179900923969	62.889	0.67302	62.889	62.552	63.225	0					37	24	2	0	0	0	0.28108	1	15488	15488		28.495	14.987	1	285390			15119	5057	8560	8560	19087	19087					0.07552094379434493
IPAKPPVSFF	10	Unmodified	_IPAKPPVSFF_					0	0	0		nc|ENSG00000153066|Q6PKC3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3-3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2981567382812	2	551.81841	1101.62227	0.33438	0.00018452	-1.2508	-0.00069023	-0.91644	-0.00050571	551.8176796498177	62.777	0.63487	62.768	62.441	63.076	-0.0085526					35	23	2	0	0	0	0.24359	1	15457	15457		38.176	6.9072	1	280390			15120	5057	8560	8560	19088	19088					0.07552094379434493
IPALDISVF	9	Unmodified	_IPALDISVF_					0	0	0		ENST00000609837.1_1_2:44394768-44394981:-|nuORF	ENST00000609837.1_1_2:44394768-44394981:-|nuORF	ENST00000609837.1_1_2:44394768-44394981:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7907409667969	2	487.781493	973.548434	0.40022	0.00019522	1.2033	0.00058695	1.6035	0.00078217	487.78149509027685	71.765	0.08017	71.738	71.685	71.765	-0.027275					4	2	2	0	0	0	0.24913	1	18241	18241		7.9102	0	1	41902			15121	12333	8561	8561	19089	19089					0.06060126217107609
IPALLDEHCSL	11	Unmodified	_IPALLDEHCSL_					0	0	0			REV__ENST00000527227.1_1_11:71191827-71192067:+|nuORF	REV__ENST00000527227.1_1_11:71191827-71192067:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.8124389648438	2	605.810456	1209.60636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.494	1	87.494	86.994	87.994	0								0	0	0	0.37452	1	23073	23073		3.2813	1.6287	1		+		15122	17743	8562	8562	19090	19090					0.009940200802020627
IPALPRLQI	9	Unmodified	_IPALPRLQI_					0	0	0		ENST00000521667.5_1_8:140743306-141301208:-|nuORF;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9	ENST00000521667.5_1_8:140743306-141301208:-|nuORF	ENST00000521667.5_1_8:140743306-141301208:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.25494384765625	2	510.831852	1019.64915	0.20996	0.00010725	-0.0085583	-4.3718E-06	0.2014	0.00010288	510.8321526519673	67.133	0.44746	67.211	66.986	67.434	0.078041					26	15	2	0	0	0	0.1659	1	16848	16848		36.044	5.8194	1	135090			15123	6192	8563	8563	19091	19091					0.14011202990604943
IPALRDISI	9	Unmodified	_IPALRDISI_					0	0	0		nc|ENSG00000185808|P57054-3|PIGP;ENSG00000185808|ENST00000360525|PIGP;nc|ENSG00000185808|P57054|PIGP	nc|ENSG00000185808|P57054-3|PIGP	nc|ENSG00000185808|P57054-3|PIGP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.3057861328125	2	499.305667	996.596781	0.74976	0.00037436	-0.58143	-0.00029031	0.16833	8.4049E-05	499.3053341604063	60.614	0.49139	60.614	60.359	60.851	0					42	17	3	0	0	0	0.097101	1	14851	14851		42.312	8.8676	1	979290			15124	7558	8564	8564	19092	19092					0.09834619856997051
IPALRDISI	9	Unmodified	_IPALRDISI_					0	0	0		nc|ENSG00000185808|P57054-3|PIGP;ENSG00000185808|ENST00000360525|PIGP;nc|ENSG00000185808|P57054|PIGP	nc|ENSG00000185808|P57054-3|PIGP	nc|ENSG00000185808|P57054-3|PIGP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3056945800781	2	499.305667	996.596781	0.67993	0.00033949	-0.44611	-0.00022274	0.23382	0.00011675	499.30540039663003	60.538	0.62601	60.635	60.27	60.896	0.096985					37	22	2	0	0	0	0.097101	1	14805	14805		57.249	9.6547	1	950530			15125	7558	8564	8564	19093	19093					0.09834619856997051
IPALRDISI	9	Unmodified	_IPALRDISI_					0	0	0		nc|ENSG00000185808|P57054-3|PIGP;ENSG00000185808|ENST00000360525|PIGP;nc|ENSG00000185808|P57054|PIGP	nc|ENSG00000185808|P57054-3|PIGP	nc|ENSG00000185808|P57054-3|PIGP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.31793212890625	2	499.305667	996.596781	0.74673	0.00037285	-0.30921	-0.00015439	0.43752	0.00021845	499.30554180969375	60.573	0.53625	60.563	60.352	60.888	-0.0094566					42	19	3	0	0	0	0.16039	1	14803	14803		42.312	7.9108	1	1298100			15126	7558	8564	8564	19094	19094					0.09834619856997051
IPALWEAK	8	Unmodified	_IPALWEAK_					0	0	0		ENST00000592434.5_2_19:45404483-45404828:+|nuORF;ENST00000369980.7_2_X:153276741-153276987:-|nuORF;chr14:57471590-57477947|244|14.41|0.71|4.34|-|0|TE_info:AluSx1,AluSx1_dup82788,Alu,SINE,donor,-,57477947,57477981|CCDC198,None|1;ENST00000355192.7_1_12:65857727-65857889:+|nuORF;ENST00000476245.5_1_3:125869637-125874346:-|nuORF;nc|nan|Q96CB5|C8orf44;ENST00000546516.5_1_16:712885-713302:+|nuORF;nc|ENSG00000267106|K7EIQ3|ZNF561-AS1;ENST00000521460.1_1_8:126375432-126379124:+|nuORF;nc|ENSG00000267106|K7EIQ3-2|ZNF561-AS1;ENST00000595125.5_1_19:50436342-50436534:+|nuORF;ENST00000500949.6_1_15:41594363-41594528:+|nuORF;AluSc_dup31764|chr19:8368578-8368876:+|1.0662085115734552|0.3059177605417522|1.8|525.0|7|3|sense;AluSq2_dup18061|chr5:139546037-139546340:-|2.2684182816549257|0.1342600248197837|4.08|522.0|7|3|sense;ENST00000407325.6_1_2:207040430-207040571:-|nuORF;ENST00000366264.6_1_3:10028614-10028719:+|nuORF;AluSz_dup29988|chr5:139546488-139546785:-|3.318666587420066|0.200378819868662|4.05|524.0|1|1|sense;AluSx_dup46550|chr7:128464363-128464662:+|1.3635279289012248|0.2785643736890567|2.29|533.0|1|1|sense;ENST00000307149.9_1_16:23400057-23400153:-|nuORF;AluJo_dup25346|chr6:106767175-106767497:+|3.418251474062376|0.3778021136602827|3.18|537.0|1|1|sense;chr14:103574170-103584864|143|10.5|0.0|20.0|+|0|TE_info:AluSg,AluSg_dup27341,Alu,SINE,acceptor,+,103584864,103585153|COA8,None|2;AluSx1_dup35892|chr6:31167962-31168233:-|1.1737052826622367|0.3160317026996443|1.89|538.0|1|1|sense;ENST00000396403.8_1_19:53996005-53996560:+|nuORF;ENST00000480582.1_1_7:150555040-150557681:+|nuORF	ENST00000592434.5_2_19:45404483-45404828:+|nuORF;ENST00000480582.1_1_7:150555040-150557681:+|nuORF	ENST00000592434.5_2_19:45404483-45404828:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7533264160156	2	464.268553	926.522553	0.02221	1.0311E-05	-1.6029	-0.00074419	-1.5807	-0.00073388	464.26578238253734	27.358	0.62992	27.347	26.984	27.614	-0.011562					42	21	3	0	0	0	0.34319	1	4548	4548		5.7604	0	1	91630			15127	9787;11010	8565	8565	19095	19095					0.05635276765474373
IPAMAIPPLI	10	Unmodified	_IPAMAIPPLI_					0	0	0		ENST00000487721.1_1_10:102796491-102797279:+|nuORF;ENSG00000107819|ENST00000393459|SFXN3	ENST00000487721.1_1_10:102796491-102797279:+|nuORF	ENST00000487721.1_1_10:102796491-102797279:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3171997070312	2	518.317189	1034.61982	0.28269	0.00014652	-0.06463	-3.3499E-05	0.21806	0.00011303	518.3170450969914	74.204	2.9158	74.256	72.538	75.454	0.052361					235	104	4	0	0	0	0.39536	1	19103	19103		4.3292	4.3292	1	1660300			15128	2150	8566	8566	19096	19096					0.10389922650119843
IPAMAIPPLI	10	Oxidation (M)	_IPAM(Oxidation (M))AIPPLI_		IPAM(1)AIPPLI		IPAM(40)AIPPLI	0	0	1		ENST00000487721.1_1_10:102796491-102797279:+|nuORF;ENSG00000107819|ENST00000393459|SFXN3	ENST00000487721.1_1_10:102796491-102797279:+|nuORF	ENST00000487721.1_1_10:102796491-102797279:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3101806640625	2	526.314646	1050.61474	0.29272	0.00015406	0.011352	5.9749E-06	0.30407	0.00016004	526.3145612779301	76.177	0.89851	76.231	76.189	77.088	0.053413					58	31	2	0	0	0	0.13612	1	19610	19610		40.449	8.1431	1	1865800			15129	2150	8566	8567	19097	19097		262			0.09145618787488274
IPAMAIPPLI	10	Oxidation (M)	_IPAM(Oxidation (M))AIPPLI_		IPAM(1)AIPPLI		IPAM(40)AIPPLI	0	0	1		ENST00000487721.1_1_10:102796491-102797279:+|nuORF;ENSG00000107819|ENST00000393459|SFXN3	ENST00000487721.1_1_10:102796491-102797279:+|nuORF	ENST00000487721.1_1_10:102796491-102797279:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3150024414062	2	526.314646	1050.61474	0.53136	0.00027966	2.4417	0.0012851	2.9731	0.0015648	526.3157360476769	76.266	1.4029	76.234	75.588	76.991	-0.031479					125	51	3	0	0	0	0.13612	1	19572	19572		40.449	11.367	1	1741400			15130	2150	8566	8567	19098	19098		262			0.09145618787488274
IPAMPPLP	8	Unmodified	_IPAMPPLP_					0	0	0		RBM12|p.S198P|1|0.23|ENSG00000244462|chr20:35654731-35654731|A/G|missense_variant	RBM12|p.S198P|1|0.23|ENSG00000244462|chr20:35654731-35654731|A/G|missense_variant	RBM12|p.S198P|1|0.23|ENSG00000244462|chr20:35654731-35654731|A/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.9275817871094	2	418.24095	834.467346	0.54564	0.00022821	-0.0089026	-3.7234E-06	0.53673	0.00022448	418.24104161437	55.854	0.74018	55.925	55.422	56.162	0.070885					39	26	2	0	0	0	0.34297	1	13266	13266		6.3541	3.4649	1	1364000			15131	13059	8567	8568	19099	19099					0.043491469733453414
IPAQFRSIK	9	Unmodified	_IPAQFRSIK_					0	0	0			REV__ENST00000436791.1_1_2:228195441-228210989:+|nuORF	REV__ENST00000436791.1_1_2:228195441-228210989:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3011474609375	2	530.319109	1058.62366	0.51672	0.00027403	-1.1764	-0.00062388	-0.65971	-0.00034986	530.3181895692832	23.544	0.59255	23.505	23.255	23.848	-0.038927					41	20	3	0	0	0	0.2719	1	3485	3485		13.042	0.80181	1	125230	+		15132	21010	8568	8569	19100	19100					0.09669728468179528
IPAQGKREG	9	Unmodified	_IPAQGKREG_					0	0	0		nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3	nc|ENSG00000164796|Q7Z407-4|CSMD3	nc|ENSG00000164796|Q7Z407-4|CSMD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2696533203125	2	478.269616	954.524678	-0.14788	-7.0727E-05	0.010173	4.8657E-06	-0.13771	-6.5862E-05	478.2696615154343	25.339	0.5786	25.308	25.021	25.599	-0.03141					57	20	4	0	0	0	0.057976	1	3999	3999		49.933	3.912	1	531480			15133	5877	8569	8570	19101	19101					0.045597055032772005
IPARFAGVL	9	Unmodified	_IPARFAGVL_					0	0	0		ENSG00000110799|ENST00000261405|VWF;chr12:6123196-6124879|152|23.53|0.37|5.99|-|0|VWF,None|1;chr12:6123196-6123541|199|25.01|0.58|5.44|-|0|VWF,None|1;chr12:6123196-6123428|166|28.03|0.59|5.57|-|0|VWF,None|1	ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2898254394531	2	472.28982	942.565087	0.25715	0.00012145	-0.053883	-2.5449E-05	0.20327	9.6002E-05	472.2896743800034	53.506	1.2895	53.506	53.173	54.462	0					104	47	3	0	0	0	0.0085732	4	12602	12602;12650;12702;12761		81.613	53.126	1	4124300			15134	2330	8570	8571	19102;19103;19104;19105	19102					0.09150671893701201
IPARFAGVL	9	Unmodified	_IPARFAGVL_					0	0	0		ENSG00000110799|ENST00000261405|VWF;chr12:6123196-6124879|152|23.53|0.37|5.99|-|0|VWF,None|1;chr12:6123196-6123541|199|25.01|0.58|5.44|-|0|VWF,None|1;chr12:6123196-6123428|166|28.03|0.59|5.57|-|0|VWF,None|1	ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2897644042969	2	472.28982	942.565087	0.14896	7.0353E-05	0.12376	5.8452E-05	0.27273	0.00012881	472.2897456470088	53.436	1.1532	53.493	53.193	54.346	0.056255					104	43	4	0	0	0	0.0085732	3	12590	12590;12638;12738		81.613	45.569	1	4521500			15135	2330	8570	8571	19106;19107;19108	19106					0.09150671893701201
IPARFAGVL	9	Unmodified	_IPARFAGVL_					0	0	0		ENSG00000110799|ENST00000261405|VWF;chr12:6123196-6124879|152|23.53|0.37|5.99|-|0|VWF,None|1;chr12:6123196-6123541|199|25.01|0.58|5.44|-|0|VWF,None|1;chr12:6123196-6123428|166|28.03|0.59|5.57|-|0|VWF,None|1	ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2899169921875	2	472.28982	942.565087	0.3261	0.00015401	-0.076021	-3.5904E-05	0.25008	0.00011811	472.2896505133624	53.61	1.1166	53.6	53.305	54.421	-0.0096054					112	41	4	0	0	0	0.0085732	2	12674	12674;12725		81.613	53.126	1	3949600			15136	2330	8570	8571	19109;19110	19109					0.09150671893701201
IPARVTLMQLP	11	Unmodified	_IPARVTLMQLP_					0	0	0		ENST00000466199.1_1_7:2406190-2411546:+|nuORF;ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENST00000466199.1_1_7:2406190-2411546:+|nuORF	ENST00000466199.1_1_7:2406190-2411546:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8687744140625	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.906	1	94.906	94.406	95.406	0								0	0	0	0.38137	1	25326	25326		1.0715	0.10919	1				15137	2065	8571	8572	19111	19111					0.11231169001871422
IPARVTLMQLP	11	Unmodified	_IPARVTLMQLP_					0	0	0		ENST00000466199.1_1_7:2406190-2411546:+|nuORF;ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENST00000466199.1_1_7:2406190-2411546:+|nuORF	ENST00000466199.1_1_7:2406190-2411546:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8690795898438	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.62	1	101.64	101.14	102.14	0.027206								0	0	0	0.37501	1	27101	27101		2.7352	0.23671	1				15138	2065	8571	8572	19112	19112					0.11231169001871422
IPARVTLMQLP	11	Unmodified	_IPARVTLMQLP_					0	0	0		ENST00000466199.1_1_7:2406190-2411546:+|nuORF;ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENST00000466199.1_1_7:2406190-2411546:+|nuORF	ENST00000466199.1_1_7:2406190-2411546:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.867919921875	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.224	1	98.217	97.717	98.717	-0.0068283								0	0	0	0.37501	1	26309	26309		2.7352	0	1				15139	2065	8571	8572	19113	19113					0.11231169001871422
IPARVTLMQLP	11	Unmodified	_IPARVTLMQLP_					0	0	0		ENST00000466199.1_1_7:2406190-2411546:+|nuORF;ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENST00000466199.1_1_7:2406190-2411546:+|nuORF	ENST00000466199.1_1_7:2406190-2411546:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8699340820312	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.61	1	100.6	100.1	101.1	-0.006897								0	0	0	0.37501	1	26909	26909		2.7352	1.0826	1				15140	2065	8571	8572	19114	19114					0.11231169001871422
IPASHNIIHN	10	Unmodified	_IPASHNIIHN_					0	0	0		ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3121337890625	2	558.301447	1114.58834	-0.12682	-7.0802E-05	0.19809	0.0001106	0.071278	3.9794E-05	558.3014105658428	25.405	0.47143	25.374	25.098	25.57	-0.03141					40	16	3	0	0	0	0.3001	1	4006	4006		20.415	0	1	277100			15141	8392	8572	8573	19115	19115					0.03563065940375054
IPATVRSSF	9	Unmodified	_IPATVRSSF_					0	0	0		nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1;nc|ENSG00000118514|Q9H2A2-2|ALDH8A1;ENST00000349305.8_1_6:135239555-135263608:-|nuORF	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2742004394531	2	489.274367	976.53418	-0.0012689	-6.2084E-07	-0.03679	-1.8E-05	-0.038059	-1.8621E-05	489.27434194336655	38.622	0.81634	38.622	38.347	39.164	0					91	28	4	0	0	0	0.015924	2	8046	8046;8094		70.332	28.492	1	2740300			15142	2832	8573	8574	19116;19117	19116					0.04497473788808293
IPATVRSSF	9	Unmodified	_IPATVRSSF_					0	0	0		nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1;nc|ENSG00000118514|Q9H2A2-2|ALDH8A1;ENST00000349305.8_1_6:135239555-135263608:-|nuORF	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2743225097656	2	489.274367	976.53418	0.3423	0.00016748	-0.38283	-0.00018731	-0.040525	-1.9828E-05	489.27414278179134	38.542	0.85145	38.633	38.373	39.225	0.090881					98	30	4	0	0	0	0.0091837	2	8063	8016;8063		80.676	38.836	1	3250500			15143	2832	8573	8574	19118;19119	19119					0.04497473788808293
IPATVRSSF	9	Unmodified	_IPATVRSSF_					0	0	0		nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1;nc|ENSG00000118514|Q9H2A2-2|ALDH8A1;ENST00000349305.8_1_6:135239555-135263608:-|nuORF	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	489.274367	976.53418	0.42058	0.00020578	-0.4924	-0.00024092	-0.071816	-3.5138E-05	489.27409396317614	38.521	0.88597	38.619	38.348	39.234	0.097527	-0.0057339	-0.00013296	NaN	80.676	97	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3055600			15144	2832	8573	8574							0.04497473788808293
IPAVHLGDGVF	11	Unmodified	_IPAVHLGDGVF_					0	0	0		ENST00000566735.1_1_16:19125342-19127388:+|nuORF;ENSG00000205730|ENST00000381440|ITPRIPL2	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8265991210938	2	562.808574	1123.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.567	1	53.624	53.124	54.124	0.056255								0	0	0	0.32418	1	12658	12658		13.906	0.39817	1				15145	8300	8574	8575	19120	19120					0.04573718368669688
IPAVSWLT	8	Unmodified	_IPAVSWLT_					0	0	0			REV__RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	REV__RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.7644348144531	2	443.755278	885.496004	0.31083	0.00013793	0.073667	3.269E-05	0.3845	0.00017062	443.7551738124048	70.351	0.72912	70.327	70.015	70.744	-0.024864					59	25	3	0	0	0	0.41097	1	17900	17900		18.135	4.6271	1	684300	+		15146	18840	8575	8576	19121	19121					0.04867587874127821
IPAVVLYCC	9	Unmodified	_IPAVVLYCC_					0	0	0		ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7509765625	2	490.750824	979.487096	0.17407	8.5423E-05	-0.37158	-0.00018235	-0.19751	-9.693E-05	490.7509108125901	76.269	0.78555	76.323	76.02	76.806	0.053421					40	27	2	0	0	0	0.11229	1	19644	19644		36.466	4.0125	1	401990			15147	1314	8576	8577	19122	19122					-0.003468450782065702
IPAVVLYCC	9	Unmodified	_IPAVVLYCC_					0	0	0		ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.75048828125	2	490.750824	979.487096	0.39952	0.00019607	-0.18919	-9.2844E-05	0.21034	0.00010322	490.75094044696436	76.276	0.68514	76.245	76.049	76.734	-0.031487					44	24	2	0	0	0	0.11229	1	19648	19648		36.466	7.9793	1	471630			15148	1314	8576	8577	19123	19123					-0.003468450782065702
IPAWTSLIT	9	Unmodified	_IPAWTSLIT_					0	0	0		ENST00000564980.1_1_16:29830785-29832247:-|nuORF	ENST00000564980.1_1_16:29830785-29832247:-|nuORF	ENST00000564980.1_1_16:29830785-29832247:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.3034973144531	2	501.286943	1000.55933	0.48766	0.00024446	0.83648	0.00041931	1.3241	0.00066377	501.28740394181506	72.052	0.48889	72.108	71.922	72.411	0.056572					31	17	2	0	0	0	0.193	1	18381	18381		24.674	2.9272	1	165590			15149	11958	8577	8578	19124	19124					0.059075285913763764
IPAWTSLIT	9	Unmodified	_IPAWTSLIT_					0	0	0		ENST00000564980.1_1_16:29830785-29832247:-|nuORF	ENST00000564980.1_1_16:29830785-29832247:-|nuORF	ENST00000564980.1_1_16:29830785-29832247:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	501.286943	1000.55933	0.42905	0.00021508	1.0239	0.00051325	1.4529	0.00072833	501.2874915572467	72.183	0.46313	72.183	71.911	72.374	0	0.024413	8.1972E-05	NaN	24.674	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188190			15150	11958	8577	8578							0.059075285913763764
IPAWTSLIT	9	Unmodified	_IPAWTSLIT_					0	0	0		ENST00000564980.1_1_16:29830785-29832247:-|nuORF	ENST00000564980.1_1_16:29830785-29832247:-|nuORF	ENST00000564980.1_1_16:29830785-29832247:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	501.286943	1000.55933	0.48766	0.00024446	0.83648	0.00041931	1.3241	0.00066377	501.28740394181506	72.052	0.48889	72.108	71.922	72.411	0.056572	-0.050116	-0.0001059	NaN	24.674	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165590			15151	11958	8577	8578							0.059075285913763764
IPAWTSLIT	9	Unmodified	_IPAWTSLIT_					0	0	0		ENST00000564980.1_1_16:29830785-29832247:-|nuORF	ENST00000564980.1_1_16:29830785-29832247:-|nuORF	ENST00000564980.1_1_16:29830785-29832247:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	501.286943	1000.55933	0.42933	0.00021522	0.94237	0.0004724	1.3717	0.00068762	501.28736881138354	72.211	0.53196	72.184	71.925	72.457	-0.027275	0.025703	2.7286E-07	NaN	24.674	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136780			15152	11958	8577	8578							0.059075285913763764
IPCSIFGFTIR	11	Unmodified	_IPCSIFGFTIR_					0	0	0			REV__nc|ENSG00000005810|O75592-2|MYCBP2	REV__nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.3397827148438	2	627.339184	1252.66381	0.38632	0.00024235	0.68642	0.00043062	1.0727	0.00067297	627.3397610268013	63.137	0.62114	63.137	62.881	63.502	0					31	22	2	0	0	0	0.46475	1	15650	15650		2.7352	1.2533	1	358720	+		15153	13346	8578	8579	19125	19125					0.047589070764615826
IPDASKLQFIL	11	Unmodified	_IPDASKLQFIL_					0	0	0		nc|ENSG00000137100|O75935-3|DCTN3;nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.8658447265625	2	622.866089	1243.71762	0.19909	0.00012401	-0.01944	-1.2109E-05	0.17965	0.0001119	622.865841760513	73.971	0.71584	73.971	73.689	74.405	0					56	23	3	0	0	0	5.4554E-06	3	18934	18882;18934;18978		128.58	63.105	1	1199300			15154	4026	8579	8580	19126;19127;19128	19127					0.10551402779788077
IPDASKLQFIL	11	Unmodified	_IPDASKLQFIL_					0	0	0		nc|ENSG00000137100|O75935-3|DCTN3;nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.8662109375	2	622.866089	1243.71762	-0.0086946	-5.4156E-06	0.093224	5.8066E-05	0.08453	5.2651E-05	622.8661125896639	73.948	0.63133	74.001	73.693	74.324	0.052368					56	21	3	0	0	0	2.3802E-05	3	18917	18866;18917;18971		111.31	45.835	1	1294300			15155	4026	8579	8580	19129;19130;19131	19130					0.10551402779788077
IPDASKLQFIL	11	Unmodified	_IPDASKLQFIL_					0	0	0		nc|ENSG00000137100|O75935-3|DCTN3;nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.367431640625	2	622.866089	1243.71762	0.1545	9.6231E-05	-0.20687	-0.00012885	-0.05237	-3.262E-05	622.8659438661643	74.021	0.61153	73.99	73.716	74.328	-0.030663					49	21	3	0	0	0	0.0013351	3	18894	18894;18947;18992		92.201	40.965	1	1584000			15156	4026	8579	8580	19132;19133;19134	19132					0.10551402779788077
IPDASKLQFIL	11	Unmodified	_IPDASKLQFIL_					0	0	0		nc|ENSG00000137100|O75935-3|DCTN3;nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8663940429688	2	622.866089	1243.71762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.389	1	74.358	73.858	74.858	-0.030655								0	0	0	0.27915	1	19047	19047		23.801	1.0648	1				15157	4026	8579	8580	19135	19135					0.10551402779788077
IPDDLPLV	8	Unmodified	_IPDDLPLV_					0	0	0			REV__ENST00000273146.6_1_3:43020947-43074030:+|nuORF	REV__ENST00000273146.6_1_3:43020947-43074030:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.26568603515625	2	441.252569	880.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.075	1	66.158	65.658	66.658	0.083832								0	0	0	0.35779	1	16510	16510		11.114	0	1		+		15158	19682	8580	8581	19136	19136					0.045558642916603276
IPDDLPLV	8	Unmodified	_IPDDLPLV_					0	0	0			REV__ENST00000273146.6_1_3:43020947-43074030:+|nuORF	REV__ENST00000273146.6_1_3:43020947-43074030:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.26568603515625	2	441.252569	880.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.236	1	66.319	65.819	66.819	0.083832								0	0	0	0.35779	1	16560	16560		11.114	0	1		+		15159	19682	8580	8581	19137	19137					0.045558642916603276
IPDDLPLV	8	Unmodified	_IPDDLPLV_					0	0	0			REV__ENST00000273146.6_1_3:43020947-43074030:+|nuORF	REV__ENST00000273146.6_1_3:43020947-43074030:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2656555175781	2	441.252569	880.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.164	1	66.151	65.651	66.651	-0.013588								0	0	0	0.35779	1	16534	16534		11.114	0	1		+		15160	19682	8580	8581	19138	19138					0.045558642916603276
IPDDLPLV	8	Unmodified	_IPDDLPLV_					0	0	0			REV__ENST00000273146.6_1_3:43020947-43074030:+|nuORF	REV__ENST00000273146.6_1_3:43020947-43074030:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.26580810546875	2	441.252569	880.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.316	1	66.302	65.802	66.802	-0.013588								0	0	0	0.35779	1	16581	16581		11.114	0	1		+		15161	19682	8580	8581	19139	19139					0.045558642916603276
IPDDPEILM	9	Unmodified	_IPDDPEILM_					0	0	0		nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3	nc|ENSG00000196338|Q9NZ94-3|NLGN3	nc|ENSG00000196338|Q9NZ94-3|NLGN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.7598266601562	2	521.759901	1041.50525	0.25558	0.00013335	0.22938	0.00011968	0.48496	0.00025303	521.759878288605	73.945	0.52055	73.945	73.578	74.098	0					29	17	2	0	0	0	0.22883	1	18924	18924		19.439	5.9311	1	355140			15162	7849	8581	8582	19140	19140					-0.01384431622500415
IPDEPSKP	8	Unmodified	_IPDEPSKP_					0	0	0		nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF	nc|ENSG00000166348|Q70EL1-7|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.9396057128906	2	441.732	881.449448	0.087075	3.8464E-05	4.1544	0.0018351	4.2414	0.0018736	441.73472220617464	49.437	0.32729	49.482	49.293	49.621	0.044888					17	11	2	0	0	0	0.34185	1	11363	11363		5.7604	1.4312	1	94702			15163	6066	8582	8583	19141	19141					0.003981032521892303
IPDGGVHI	8	Unmodified	_IPDGGVHI_					0	0	0		ENSG00000183808|ENST00000520560|RBM12B;RBM12B|p.V521*|1|0.34|ENSG00000183808|chr8:93734840-93734850|AAAGCACCAAC/-|frameshift_variant;ENST00000454607.5_1_20:34220607-34246883:-|nuORF;ENST00000352393.8_2_20:34220804-34246883:-|nuORF;ENST00000440240.5_1_20:34220804-34252800:-|nuORF;ENSG00000244462|ENST00000374114|RBM12	ENSG00000183808|ENST00000520560|RBM12B;ENSG00000244462|ENST00000374114|RBM12	ENSG00000183808|ENST00000520560|RBM12B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.5645751953125	2	404.221603	806.428653	-1.2919	-0.00052221	-0.17799	-7.1948E-05	-1.4699	-0.00059416	404.2214375087225	34.48	0.31951	34.555	34.444	34.763	0.075306					17	11	2	0	0	0	0.31375	1	6851	6851		19.439	4.8573	1	95711			15164	7410;8570	8583	8584	19142	19142					0.017695576631808763
IPDGGVHII	9	Unmodified	_IPDGGVHII_					0	0	0		ENSG00000183808|ENST00000520560|RBM12B;RBM12B|p.V521*|1|0.34|ENSG00000183808|chr8:93734840-93734850|AAAGCACCAAC/-|frameshift_variant	ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.7635192871094	2	460.763635	919.512717	0.17557	8.0896E-05	0.086647	3.9924E-05	0.26222	0.00012082	460.76355845021175	50.183	0.86176	50.183	49.793	50.654	0					82	31	3	0	0	0	0.0046213	3	11572	11572;11621;11699		89.427	28.069	1	1546700			15165	7410	8584	8585	19143;19144;19145	19143					0.04974088760093309
IPDGGVHII	9	Unmodified	_IPDGGVHII_					0	0	0		ENSG00000183808|ENST00000520560|RBM12B;RBM12B|p.V521*|1|0.34|ENSG00000183808|chr8:93734840-93734850|AAAGCACCAAC/-|frameshift_variant	ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.7635803222656	2	460.763635	919.512717	0.53034	0.00024436	-0.14257	-6.5691E-05	0.38777	0.00017867	460.7634836906524	50.179	1.2656	50.224	49.825	51.09	0.044891					105	46	3	0	0	0	0.0030686	3	11575	11575;11624;11674		101.72	30.588	1	1683300			15166	7410	8584	8585	19146;19147;19148	19146					0.04974088760093309
IPDGGVHII	9	Unmodified	_IPDGGVHII_					0	0	0		ENSG00000183808|ENST00000520560|RBM12B;RBM12B|p.V521*|1|0.34|ENSG00000183808|chr8:93734840-93734850|AAAGCACCAAC/-|frameshift_variant	ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.7635498046875	2	460.763635	919.512717	0.63813	0.00029403	-0.27687	-0.00012757	0.36126	0.00016646	460.7633668322199	50.175	1.1227	50.195	49.802	50.924	0.020691					104	41	4	0	0	0	0.010938	4	11559	11559;11608;11658;11710		77.984	25.716	1	1511800			15167	7410	8584	8585	19149;19150;19151;19152	19149					0.04974088760093309
IPDHYVFA	8	Unmodified	_IPDHYVFA_					0	0	0		ENST00000514498.1_1_4:166325831-166326179:-|nuORF	ENST00000514498.1_1_4:166325831-166326179:-|nuORF	ENST00000514498.1_1_4:166325831-166326179:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2409973144531	2	481.242535	960.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.764	1	88.761	88.261	89.261	-0.0028381								0	0	0	0.36169	1	23449	23449		9.3474	0	1				15168	11416	8585	8586	19153	19153					-0.011298866482889025
IPDLCDSSSS	10	Unmodified	_IPDLCDSSSS_					0	0	0		ENSG00000137674|ENST00000260228|MMP20	ENSG00000137674|ENST00000260228|MMP20	ENSG00000137674|ENST00000260228|MMP20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.8292846679688	2	512.218597	1022.42264	0.25702	0.00013165	-0.094658	-4.8485E-05	0.16236	8.3166E-05	512.2190056470483	44.276	0.40968	44.351	44.174	44.583	0.075047					34	14	3	0	0	0	0.3156	1	9801	9801		10.824	4.4698	1	392550			15169	4066	8586	8587	19154	19154					-0.08767373421289903
IPDLCDSSSS	10	Unmodified	_IPDLCDSSSS_					0	0	0		ENSG00000137674|ENST00000260228|MMP20	ENSG00000137674|ENST00000260228|MMP20	ENSG00000137674|ENST00000260228|MMP20	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	512.218597	1022.42264	0.52687	0.00026987	0.4933	0.00025268	1.0202	0.00052255	512.2189762348263	44.531	0.49944	44.531	44.33	44.829	0	0.10299	0.00015609	NaN	10.824	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360130			15170	4066	8586	8587							-0.08767373421289903
IPDLCDSSSS	10	Unmodified	_IPDLCDSSSS_					0	0	0		ENSG00000137674|ENST00000260228|MMP20	ENSG00000137674|ENST00000260228|MMP20	ENSG00000137674|ENST00000260228|MMP20	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	512.218597	1022.42264	0.42634	0.00021838	0.34407	0.00017624	0.77042	0.00039462	512.2189103309454	44.334	0.59252	44.402	44.147	44.739	0.068569	-0.02581	3.2106E-06	NaN	10.824	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	471450			15171	4066	8586	8587							-0.08767373421289903
IPDLNDILDR	10	Unmodified	_IPDLNDILDR_					0	0	0		ENSG00000111713|ENST00000261195|GYS2	ENSG00000111713|ENST00000261195|GYS2	ENSG00000111713|ENST00000261195|GYS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.80126953125	2	592.319502	1182.62445	0.44882	0.00026584	1.5459	0.00091569	1.9948	0.0011815	592.320327250708	59.721	0.50846	59.709	59.459	59.968	-0.011486					40	17	3	0	0	0	0.19345	1	14565	14565		33.445	4.9504	1	992840			15172	2383	8587	8588	19155	19155					0.04044478326568424
IPDLPKDLR	9	Unmodified	_IPDLPKDLR_					0	0	0		nc|ENSG00000151572|Q32M45-3|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4;ENSG00000151572|ENST00000392977|ANO4;chr12:100740105-100901646|299|10.57|0.2|5.71|+|ENST00000644049|ANO4,ANO4;chr12:100733857-100739854|321|10.37|0.22|5.55|+|ENST00000644049|ANO4,ANO4	nc|ENSG00000151572|Q32M45-3|ANO4	nc|ENSG00000151572|Q32M45-3|ANO4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.79931640625	2	533.816399	1065.61824	0.63911	0.00034117	0.075282	4.0187E-05	0.71439	0.00038135	533.8161884731653	49.46	0.40742	49.46	49.218	49.626	0					26	14	2	0	0	0	0.20626	1	11337	11337		22.736	2.2827	1	229340			15173	129	8588	8589	19156	19156					0.08806004885673246
IPDSRRENEL	10	Unmodified	_IPDSRRENEL_					0	0	0		ENSG00000170903|ENST00000301919|MSANTD4	ENSG00000170903|ENST00000301919|MSANTD4	ENSG00000170903|ENST00000301919|MSANTD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.8880615234375	3	410.214198	1227.62076	0.10003	4.1035E-05	-1.1252	-0.00046158	-1.0252	-0.00042055	410.2138982849105	24.078	0.71249	24.039	23.765	24.478	-0.038927					51	24	3	0	0	0	0.32068	1	3680	3680		1.7423	0	1	109290			15174	6493	8589	8590	19157	19157					0.0160580855272201
IPDTRGYL	8	Unmodified	_IPDTRGYL_					0	0	0			REV__ENSG00000165632|ENST00000344293|TAF3	REV__ENSG00000165632|ENST00000344293|TAF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2738952636719	2	467.753267	933.491981	0.1473	6.8902E-05	0.0099591	4.6584E-06	0.15726	7.3561E-05	467.7532375448172	49.1	0.65871	49.1	48.883	49.542	0					36	23	2	0	0	0	0.34131	1	11359	11359		7.9102	0	1	360240	+		15175	17247	8590	8591	19158	19158					0.022574983804247495
IPDTRGYL	8	Unmodified	_IPDTRGYL_					0	0	0			REV__ENSG00000165632|ENST00000344293|TAF3	REV__ENSG00000165632|ENST00000344293|TAF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2738952636719	2	467.753267	933.491981	0.041936	1.9616E-05	0.20624	9.6469E-05	0.24817	0.00011608	467.7531679951683	49.099	0.78784	49.144	48.989	49.776	0.044891					41	28	2	0	0	0	0.34247	1	11366	11366		8.5933	2.2392	1	354270	+		15176	17247	8590	8591	19159	19159					0.022574983804247495
IPDTRGYL	8	Unmodified	_IPDTRGYL_					0	0	0			REV__ENSG00000165632|ENST00000344293|TAF3	REV__ENSG00000165632|ENST00000344293|TAF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.27386474609375	2	467.753267	933.491981	0.048811	2.2831E-05	0.12951	6.0578E-05	0.17832	8.3409E-05	467.7531825425869	49.052	0.80271	49.084	48.878	49.681	0.032043					46	28	3	0	0	0	0.34131	1	11348	11348		12.532	7.3009	1	328980	+		15177	17247	8590	8591	19160	19160					0.022574983804247495
IPEAQEEKN	9	Unmodified	_IPEAQEEKN_					0	0	0		ENST00000518860.1_1_8:67591882-67592170:+|nuORF	ENST00000518860.1_1_8:67591882-67592170:+|nuORF	ENST00000518860.1_1_8:67591882-67592170:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2508544921875	2	529.261653	1056.50875	-0.54756	-0.0002898	-0.75867	-0.00040153	-1.3062	-0.00069134	529.2610694073372	35.106	0.30853	35.106	34.943	35.251	0					20	10	3	0	0	0	0.19747	1	6997	6997		24.021	1.2843	1	279100			15178	11450	8591	8592	19161	19161					-0.01724045524269968
IPEAQEEKN	9	Unmodified	_IPEAQEEKN_					0	0	0		ENST00000518860.1_1_8:67591882-67592170:+|nuORF	ENST00000518860.1_1_8:67591882-67592170:+|nuORF	ENST00000518860.1_1_8:67591882-67592170:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	529.261653	1056.50875	-0.66295	-0.00035087	-0.32346	-0.00017119	-0.9864	-0.00052207	529.2612559769101	35.015	0.41418	35.09	34.874	35.288	0.075306	-0.015116	0.00016643	NaN	24.021	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227670			15179	11450	8591	8592							-0.01724045524269968
IPEEQRAQL	9	Unmodified	_IPEEQRAQL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.794921875	2	542.293288	1082.57202	0.71008	0.00038507	-0.40259	-0.00021832	0.30748	0.00016675	542.2930670656721	32.238	0.65248	32.238	32.01	32.662	0					58	23	5	0	0	0	0.073988	1	6117	6117		43.982	9.0498	1	390560			15180	12859	8592	8593	19162	19162					0.03403939983604687
IPEEQRAQL	9	Unmodified	_IPEEQRAQL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2937622070312	2	542.293288	1082.57202	0.84741	0.00045955	0.029339	1.591E-05	0.87675	0.00047546	542.293208931441	32.142	0.58245	32.184	31.994	32.577	0.042366					52	20	4	0	0	0	0.04299	1	6073	6073		55.503	9.8031	1	455270			15181	12859	8592	8593	19163	19163					0.03403939983604687
IPEEQRAQL	9	Unmodified	_IPEEQRAQL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2935791015625	2	542.293288	1082.57202	0.6036	0.00032733	0.28745	0.00015588	0.89105	0.00048321	542.2933029641063	32.206	0.64127	32.26	31.961	32.602	0.053143					48	22	3	0	0	0	0.053988	1	6095	6095		51.415	9.4597	1	431200			15182	12859	8592	8593	19164	19164					0.03403939983604687
IPEEQRLNLKI	11	Unmodified	_IPEEQRLNLKI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2585754394531	3	451.601393	1351.78235	-0.00226	-1.0206E-06	-0.41082	-0.00018553	-0.41308	-0.00018655	451.6012743649153	26.103	0.38533	26.064	25.931	26.316	-0.038671					24	13	2	0	0	0	0.33263	1	4290	4290		3.8459	1.0026	1	86719			15183	5186	8593	8594	19165	19165					0.12052977585790359
IPEEQRLNLKI	11	Unmodified	_IPEEQRLNLKI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	451.601393	1351.78235	0.036906	1.6667E-05	-0.57477	-0.00025957	-0.53787	-0.0002429	451.6011386845118	26.118	0.39571	26.118	25.955	26.35	0	-0.019466	5.2884E-05	NaN	3.8459	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75950			15184	5186	8593	8594							0.12052977585790359
IPEEQRLNLKI	11	Unmodified	_IPEEQRLNLKI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	451.601393	1351.78235	0.18567	8.3847E-05	-0.93978	-0.0004244	-0.75411	-0.00034056	451.6011273423713	26.252	0.3901	26.23	25.991	26.381	-0.022236	0.09228	-0.00044162	NaN	3.8459	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113770			15185	5186	8593	8594							0.12052977585790359
IPEEYLVLE	9	Unmodified	_IPEEYLVLE_					0	0	0		ENST00000552666.1_1_14:36235117-36235897:+|nuORF	ENST00000552666.1_1_14:36235117-36235897:+|nuORF	ENST00000552666.1_1_14:36235117-36235897:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7936401367188	2	552.794798	1103.57504	-0.99129	-0.00054798	-0.41502	-0.00022942	-1.4063	-0.0007774	552.7944376886842	34.704	0.78256	34.704	34.418	35.2	0					56	27	3	0	0	0	0.22188	1	6911	6911		20.454	1.1966	1	734450			15186	11811	8594	8595	19166	19166					0.027397703177712174
IPEIAMHLL	9	Unmodified	_IPEIAMHLL_					0	0	0			REV__ENST00000422342.2_1_12:121746285-121747708:-|nuORF	REV__ENST00000422342.2_1_12:121746285-121747708:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3317260742188	2	518.79662	1035.57869	0.20839	0.00010811	-0.53423	-0.00027716	-0.32584	-0.00016905	518.7962736209846	67.556	0.14218	67.539	67.451	67.593	-0.016296					6	4	2	0	0	0	0.25291	1	16973	16973		9.3474	2.9933	1	82884	+		15187	14023	8595	8596	19167	19167					0.06232161610660114
IPEIAMHLL	9	Unmodified	_IPEIAMHLL_					0	0	0			REV__ENST00000422342.2_1_12:121746285-121747708:-|nuORF	REV__ENST00000422342.2_1_12:121746285-121747708:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	518.79662	1035.57869	0.35728	0.00018536	0.25108	0.00013026	0.60836	0.00031562	518.7971374426583	67.251	0.086746	67.251	67.193	67.279	0	-0.14428	0.00066431	NaN	9.3474	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48220	+		15188	14023	8595	8596							0.06232161610660114
IPELAARGII	10	Unmodified	_IPELAARGII_					0	0	0		ENSG00000074855|ENST00000159087|ANO8;nc|ENSG00000074855|Q9HCE9-2|ANO8	ENSG00000074855|ENST00000159087|ANO8	ENSG00000074855|ENST00000159087|ANO8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.290283203125	2	526.826766	1051.63898	0.61168	0.00032225	-0.75506	-0.00039779	-0.14338	-7.5534E-05	526.8262263802496	54.196	0.87513	54.259	53.902	54.777	0.063206					49	32	3	0	0	0	0.27979	1	12816	12816		21.537	10.737	1	387580			15189	1031	8596	8597	19168	19168					0.11522595265387281
IPELAARGII	10	Unmodified	_IPELAARGII_					0	0	0		ENSG00000074855|ENST00000159087|ANO8;nc|ENSG00000074855|Q9HCE9-2|ANO8	ENSG00000074855|ENST00000159087|ANO8	ENSG00000074855|ENST00000159087|ANO8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2902221679688	2	526.826766	1051.63898	0.66775	0.00035179	-0.99225	-0.00052275	-0.32451	-0.00017096	526.8265918173437	54.301	0.94507	54.285	53.604	54.55	-0.015923					44	33	2	0	0	0	0.29589	1	12894	12894		17.113	9.5039	1	426140			15190	1031	8596	8597	19169	19169					0.11522595265387281
IPELEQEKL	9	Unmodified	_IPELEQEKL_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7559204101562	2	549.805697	1097.59684	0.57679	0.00031712	0.32946	0.00018114	0.90625	0.00049826	549.8057087796154	42.09	0.3757	42.181	42.037	42.413	0.091362					18	12	2	0	0	0	0.25202	1	9084	9084		10.824	0	1	114750			15191	7771	8597	8598	19170	19170					0.05194575066343532
IPELRLGVL	9	Unmodified	_IPELRLGVL_					0	0	0		nc|ENSG00000135439|Q99490-2|AGAP2;nc|ENSG00000135439|Q99490|AGAP2;ENSG00000135439|ENST00000547588|AGAP2	nc|ENSG00000135439|Q99490-2|AGAP2	nc|ENSG00000135439|Q99490-2|AGAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.3238220214844	2	505.32386	1008.63317	0.40491	0.00020461	-0.90858	-0.00045913	-0.50368	-0.00025452	505.3235526329127	68.773	0.74689	68.773	68.566	69.313	0					53	26	3	0	0	0	0.09758	1	17360	17360		38.615	7.9782	1	370760			15192	3876	8598	8599	19171	19171					0.12919496753715976
IPEPEDMETL	10	Unmodified	_IPEPEDMETL_					0	0	0		nc|ENSG00000205111|Q5MAI5-2|CDKL4;ENSG00000205111|ENST00000699627|CDKL4;nc|ENSG00000205111|Q5MAI5|CDKL4	nc|ENSG00000205111|Q5MAI5-2|CDKL4	nc|ENSG00000205111|Q5MAI5-2|CDKL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.3272705078125	2	587.270829	1172.52711	0.19789	0.00011621	1.1374	0.00066794	1.3353	0.00078416	587.2718401472086	59.577	0.1106	59.577	59.479	59.59	0					6	3	2	0	0	0	0.3156	1	14507	14507		3.5965	0	1	177270			15193	12911	8599	8600	19172	19172					-0.05225671664584297
IPEPPKLLA	9	Unmodified	_IPEPPKLLA_					0	0	0			REV__nc|ENSG00000173093|Q8NA47-2|CCDC63	REV__nc|ENSG00000173093|Q8NA47-2|CCDC63	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.7792053222656	2	489.305136	976.595718	0.2411	0.00011797	0.044047	2.1553E-05	0.28515	0.00013952	489.3051422268682	73.253	1.1758	73.253	72.428	73.604	0					49	42	2	0	0	0	0.25417	1	18527	18527		8.5933	0.68312	1	158960	+		15194	17758	8600	8601	19173	19173					0.1064840548808661
IPEPPKLLA	9	Unmodified	_IPEPPKLLA_					0	0	0			REV__nc|ENSG00000173093|Q8NA47-2|CCDC63	REV__nc|ENSG00000173093|Q8NA47-2|CCDC63	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	489.305136	976.595718	0.19225	9.4071E-05	0.45563	0.00022294	0.64789	0.00031701	489.3052176200844	73.203	0.84914	73.256	72.948	73.797	0.053833	-0.039567	0.00034679	NaN	8.5933	46	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148430	+		15195	17758	8600	8601							0.1064840548808661
IPEPPKLLA	9	Unmodified	_IPEPPKLLA_					0	0	0			REV__nc|ENSG00000173093|Q8NA47-2|CCDC63	REV__nc|ENSG00000173093|Q8NA47-2|CCDC63	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	489.305136	976.595718	0.35786	0.0001751	-0.11729	-5.7393E-05	0.24056	0.00011771	489.30509716389486	73.408	0.76403	73.378	72.98	73.744	-0.029305	0.082242	-0.00021388	NaN	8.5933	42	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160130	+		15196	17758	8600	8601							0.1064840548808661
IPEPPSYLL	9	Unmodified	_IPEPPSYLL_					0	0	0		nc|ENSG00000156925|O60481-2|ZIC3;ENSG00000156925|ENST00000287538|ZIC3	nc|ENSG00000156925|O60481-2|ZIC3	nc|ENSG00000156925|O60481-2|ZIC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7967529296875	2	514.786776	1027.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.351	1	76.319	75.819	76.819	-0.031487								0	0	0	0.23091	1	19646	19646		12.532	0.29089	1				15197	5265	8601	8602	19174	19174					0.04632108871510354
IPEPQKPQL	9	Unmodified	_IPEPQKPQL_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3033447265625	2	525.303124	1048.5917	0.68611	0.00036042	-0.94852	-0.00049826	-0.26241	-0.00013784	525.3029623515453	40.349	0.91411	40.442	39.803	40.718	0.09267					74	32	3	0	0	0	0.1335	1	8607	8607		47.594	11.55	1	631620			15198	1866	8602	8603	19175	19175					0.06934315994362805
IPEQGPGNSL	10	Unmodified	_IPEQGPGNSL_					0	0	0			REV__nc|ENSG00000129214|P04278-4|SHBG	REV__nc|ENSG00000129214|P04278-4|SHBG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.27996826171875	2	506.258914	1010.50327	0.14588	7.3851E-05	-0.031345	-1.5869E-05	0.11453	5.7982E-05	506.2588725232812	42.078	1.0179	42.078	41.825	42.842	0					93	36	3	0	0	0	0.36786	1	9265	9265		9.3831	9.3831	1	3826700	+		15199	15404	8603	8604	19176	19176					-0.0015572431608461557
IPESRPAL	8	Unmodified	_IPESRPAL_					0	0	0		nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3	nc|ENSG00000105289|O95049-5|TJP3	nc|ENSG00000105289|O95049-5|TJP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.787841796875	2	441.75581	881.497067	0.18303	8.0854E-05	0.11663	5.1523E-05	0.29966	0.00013238	441.75583547983194	37.836	0.51874	37.927	37.718	38.237	0.090881					28	18	3	0	0	0	0.3366	1	7801	7801		12.532	0	1	165980			15200	1963	8604	8605	19177	19177					0.05157802243047627
IPESRPAL	8	Unmodified	_IPESRPAL_					0	0	0		nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3	nc|ENSG00000105289|O95049-5|TJP3	nc|ENSG00000105289|O95049-5|TJP3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	441.75581	881.497067	0.28472	0.00012578	-0.2373	-0.00010483	0.047415	2.0946E-05	441.7556610069012	37.895	0.56042	37.895	37.735	38.295	0	0.0043936	-0.00017842	NaN	12.532	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213770			15201	1963	8604	8605							0.05157802243047627
IPESRPAL	8	Unmodified	_IPESRPAL_					0	0	0		nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3	nc|ENSG00000105289|O95049-5|TJP3	nc|ENSG00000105289|O95049-5|TJP3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	441.75581	881.497067	0.16834	7.4364E-05	-0.089428	-3.9505E-05	0.078908	3.4858E-05	441.75582744917097	37.753	0.40993	37.85	37.654	38.064	0.097527	-0.040423	-4.777E-05	NaN	12.532	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197410			15202	1963	8604	8605							0.05157802243047627
IPFEFPLHL	9	Unmodified	_IPFEFPLHL_					0	0	0		ENST00000492514.1_1_21:38610748-38639601:-|nuORF;ENST00000475009.1_1_21:38610748-38639643:-|nuORF;ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;nc|ENSG00000157538|O14972-2|VPS26C;ENSG00000157538|ENST00000309117|VPS26C	ENST00000492514.1_1_21:38610748-38639601:-|nuORF	ENST00000492514.1_1_21:38610748-38639601:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.8121948242188	2	556.810585	1111.60662	0.58613	0.00032636	0.32868	0.00018301	0.91481	0.00050937	556.8105218298525	83.587	0.59394	83.587	83.2	83.794	0					29	21	2	0	0	0	0.17787	1	21876	21876		26.884	16.06	1	161400			15203	5312	8605	8606	19178	19178					0.055278078623587135
IPFEFPLHL	9	Unmodified	_IPFEFPLHL_					0	0	0		ENST00000492514.1_1_21:38610748-38639601:-|nuORF;ENST00000475009.1_1_21:38610748-38639643:-|nuORF;ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;nc|ENSG00000157538|O14972-2|VPS26C;ENSG00000157538|ENST00000309117|VPS26C	ENST00000492514.1_1_21:38610748-38639601:-|nuORF	ENST00000492514.1_1_21:38610748-38639601:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7355346679688	2	556.810585	1111.60662	0.45731	0.00025463	-0.41034	-0.00022848	0.046962	2.6149E-05	556.810367078354	83.511	0.68452	83.495	83.082	83.767	-0.01683					44	28	3	0	0	0	0.20651	1	21819	21819		26.884	12.045	1	209220			15204	5312	8605	8606	19179	19179					0.055278078623587135
IPFFDDFCVNK	11	Unmodified	_IPFFDDFCVNK_					0	0	0			REV__ENSG00000164411|ENST00000525899|GJB7	REV__ENSG00000164411|ENST00000525899|GJB7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.8811340332031	3	448.88128	1343.62201	0.060162	2.7006E-05	-0.79838	-0.00035838	-0.73822	-0.00033137	448.8811345437668	26.025	0.72997	26.025	25.769	26.499	0					68	25	4	0	0	0	0.4112	1	4264	4264		9.7643	0	1	313840	+		15205	17156	8606	8607	19180	19180					-0.036056934027556053
IPFGTLVAI	9	Unmodified	_IPFGTLVAI_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7868347167969	2	465.786579	929.558604	0.21841	0.00010173	0.79897	0.00037215	1.0174	0.00047389	465.78688047751405	84.868	0.8357	84.868	84.555	85.39	0					48	31	2	0	0	0	0.21303	2	22268	22268;22300		21.747	0	1	331240			15206	3196	8607	8608	19181;19182	19181					0.09100733942329953
IPFGTLVAI	9	Unmodified	_IPFGTLVAI_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.786865234375	2	465.786579	929.558604	0.25021	0.00011655	0.7371	0.00034333	0.98731	0.00045988	465.7868536824466	84.751	0.71919	84.832	84.618	85.337	0.080887					46	27	2	0	0	0	0.21905	1	22228	22228		23.148	5.0134	1	244930			15207	3196	8607	8608	19183	19183					0.09100733942329953
IPFGTLVAI	9	Unmodified	_IPFGTLVAI_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.777587890625	2	465.786579	929.558604	0.41157	0.0001917	0.44721	0.00020831	0.85878	0.00040001	465.78676019208797	84.919	0.63903	84.906	84.557	85.196	-0.01284					46	25	2	0	0	0	0.21303	2	22257	22221;22257		21.747	0	1	241100			15208	3196	8607	8608	19184;19185	19185					0.09100733942329953
IPFGTPIVV	9	Unmodified	_IPFGTPIVV_					0	0	0		ENST00000416579.5_1_2:73200539-73298852:-|nuORF;ENSG00000144040|ENST00000272433|SFXN5;ENST00000450185.5_1_2:73225858-73250341:-|nuORF;ENST00000474528.5_1_2:73172153-73286292:-|nuORF	ENST00000416579.5_1_2:73200539-73298852:-|nuORF	ENST00000416579.5_1_2:73200539-73298852:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.78668212890625	2	471.786579	941.558604	0.46871	0.00022113	-1.1223	-0.00052948	-0.65357	-0.00030835	471.78648366977774	77.7	0.99191	77.7	77.336	78.328	0					104	36	4	0	0	0	0.155	2	20081	20033;20081		30.225	12.09	1	1299200			15209	4561	8608	8609	19186;19187	19187					0.0854873394232527
IPFGTPIVV	9	Unmodified	_IPFGTPIVV_					0	0	0		ENST00000416579.5_1_2:73200539-73298852:-|nuORF;ENSG00000144040|ENST00000272433|SFXN5;ENST00000450185.5_1_2:73225858-73250341:-|nuORF;ENST00000474528.5_1_2:73172153-73286292:-|nuORF	ENST00000416579.5_1_2:73200539-73298852:-|nuORF	ENST00000416579.5_1_2:73200539-73298852:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7866516113281	2	471.786579	941.558604	0.54243	0.00025591	-2.0414	-0.0009631	-1.499	-0.00070719	471.7864603247411	77.643	0.98684	77.699	77.346	78.333	0.05542					137	35	5	0	0	0	0.20344	2	20052	20006;20052		23.148	5.8995	1	1273500			15210	4561	8608	8609	19188;19189	19189					0.0854873394232527
IPFGTPIVV	9	Unmodified	_IPFGTPIVV_					0	0	0		ENST00000416579.5_1_2:73200539-73298852:-|nuORF;ENSG00000144040|ENST00000272433|SFXN5;ENST00000450185.5_1_2:73225858-73250341:-|nuORF;ENST00000474528.5_1_2:73172153-73286292:-|nuORF	ENST00000416579.5_1_2:73200539-73298852:-|nuORF	ENST00000416579.5_1_2:73200539-73298852:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.7866516113281	2	471.786579	941.558604	0.71848	0.00033897	-3.0164	-0.0014231	-2.2979	-0.0010841	471.78637863518435	77.732	1.0007	77.701	77.346	78.347	-0.031334					144	36	6	0	0	0	0.20344	2	20015	20015;20062		23.148	1.4018	1	1365000			15211	4561	8608	8609	19190;19191	19190					0.0854873394232527
IPFIGVVKV	9	Unmodified	_IPFIGVVKV_					0	0	0		nc|ENSG00000175115|Q6VY07-2|PACS1;ENSG00000175115|ENST00000320580|PACS1	nc|ENSG00000175115|Q6VY07-2|PACS1	nc|ENSG00000175115|Q6VY07-2|PACS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.800537109375	2	486.318046	970.621539	0.20144	9.7964E-05	1.3471	0.00065512	1.5485	0.00075308	486.31852911082353	68.416	0.82729	68.488	68.078	68.905	0.071938					58	30	2	0	0	0	0.1659	1	17146	17146		21.747	10.106	1	994770			15212	6839	8609	8610	19192	19192					0.13505299730377374
IPFKQLSIQ	9	Unmodified	_IPFKQLSIQ_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.243408203125	2	537.321317	1072.62808	0.42181	0.00022665	-0.17504	-9.4055E-05	0.24676	0.00013259	537.3214785897053	65.572	0.37445	65.661	65.519	65.893	0.088882					17	13	2	0	0	0	0.1939	1	16355	16355		30.637	10.183	1	197090	+		15213	15219	8610	8611	19193	19193					0.09467192891088416
IPFLAYIF	8	Unmodified	_IPFLAYIF_					0	0	0		ENST00000464362.5_1_22:26861779-26861875:-|nuORF	ENST00000464362.5_1_22:26861779-26861875:-|nuORF	ENST00000464362.5_1_22:26861779-26861875:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7840881347656	2	492.283672	982.552791	0.38064	0.00018738	-2.0923	-0.00103	-1.7116	-0.00084261	492.28175461023744	57.161	1.3523	57.24	56.829	58.182	0.078674					174	49	7	0	0	0	0.41716	1	13797	13797		17.087	0.14425	1	11966000			15214	10784	8611	8612	19194	19194					0.06081635430643928
IPFLGAGIKI	10	Unmodified	_IPFLGAGIKI_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000520450.5_1_5:169484535-169509859:+|nuORF;ENST00000519868.1_1_5:169502602-169506159:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.828857421875	2	514.828778	1027.643	0.38964	0.0002006	0.15981	8.2273E-05	0.54944	0.00028287	514.8287248145626	72.966	0.99113	72.966	72.613	73.604	0					82	35	3	0	0	0	0.017063	2	18616	18616;18666		74.929	28.123	1	921390			15215	3792	8612	8613	19195;19196	19195					0.13028684759092357
IPFLGAGIKI	10	Unmodified	_IPFLGAGIKI_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000520450.5_1_5:169484535-169509859:+|nuORF;ENST00000519868.1_1_5:169502602-169506159:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.828857421875	2	514.828778	1027.643	0.21359	0.00010996	0.28401	0.00014622	0.49761	0.00025618	514.8287852550745	72.975	1.034	73.028	72.629	73.663	0.053841					84	37	3	0	0	0	0.0054722	2	18586	18586;18631		88.904	31.432	1	965150			15216	3792	8612	8613	19197;19198	19197					0.13028684759092357
IPFLGAGIKI	10	Unmodified	_IPFLGAGIKI_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000520450.5_1_5:169484535-169509859:+|nuORF;ENST00000519868.1_1_5:169502602-169506159:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.8289184570312	2	514.828778	1027.643	0.32688	0.00016829	0.17725	9.1253E-05	0.50413	0.00025954	514.8287703831695	73.051	0.95385	73.022	72.657	73.611	-0.029305					84	34	3	0	0	0	0.014109	2	18603	18603;18654		78.149	29.804	1	1000700			15217	3792	8612	8613	19199;19200	19199					0.13028684759092357
IPFLVSSI	8	Unmodified	_IPFLVSSI_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENST00000492058.1_1_2:183799470-183800113:-|nuORF	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.26531982421875	2	438.265479	874.516405	0.066376	2.909E-05	-0.34009	-0.00014905	-0.27372	-0.00011996	438.2650726555699	81.065	0.70644	81.038	80.731	81.438	-0.026817					75	29	3	0	0	0	0.058048	1	21097	21097		74.396	0	1	1093900			15218	760	8613	8614	19201	19201					0.0741275853396246
IPFLVSSI	8	Unmodified	_IPFLVSSI_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENST00000492058.1_1_2:183799470-183800113:-|nuORF	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	438.265479	874.516405	0.017946	7.8651E-06	-0.12259	-5.3725E-05	-0.10464	-4.586E-05	438.26526223783327	81.018	0.6797	81.018	80.733	81.412	0	0.0086011	2.0202E-05	NaN	74.396	90	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1184600			15219	760	8613	8614							0.0741275853396246
IPFLVSSI	8	Unmodified	_IPFLVSSI_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENST00000492058.1_1_2:183799470-183800113:-|nuORF	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	438.265479	874.516405	-0.16753	-7.3424E-05	-0.027918	-1.2235E-05	-0.19545	-8.5659E-05	438.265195458103	80.908	0.82481	80.973	80.701	81.526	0.065102	-0.03668	0.00010318	NaN	74.396	90	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1151500			15220	760	8613	8614							0.0741275853396246
IPFPQHLNI	9	Unmodified	_IPFPQHLNI_					0	0	0		ENSG00000130962|ENST00000378628|PRRG1	ENSG00000130962|ENST00000378628|PRRG1	ENSG00000130962|ENST00000378628|PRRG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.3038940429688	2	539.805834	1077.59712	0.69288	0.00037402	-0.8578	-0.00046305	-0.16493	-8.9028E-05	539.80559556729	92.206	0.56277	92.207	92.056	92.619	0.00047302					62	39	2	0	0	0	0.25417	1	24490	24490		8.5933	0	1	310410			15221	3532	8614	8615	19202	19202					0.061420395768209346
IPFPVEKI	8	Unmodified	_IPFPVEKI_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.78662109375	2	471.786579	941.558604	0.067508	3.1849E-05	-0.16195	-7.6405E-05	-0.094441	-4.4556E-05	471.7865330172591	57.907	1.4985	57.907	57.634	59.133	0					126	52	4	0	0	0	0.0016019	4	14010	13962;14010;14057;14109		136.33	34.611	1	6896600			15222	2700	8615	8616	19203;19204;19205;19206	19204					0.0854873394232527
IPFPVEKI	8	Unmodified	_IPFPVEKI_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.78656005859375	2	471.786579	941.558604	0.20389	9.6193E-05	-0.35728	-0.00016856	-0.15339	-7.2369E-05	471.78644851086847	57.782	1.158	57.868	57.544	58.702	0.085617					116	41	4	0	0	0	0.00054609	3	13931	13931;13977;14030		149.99	45.195	1	7255300			15223	2700	8615	8616	19207;19208;19209	19207					0.0854873394232527
IPFPVEKI	8	Unmodified	_IPFPVEKI_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.78668212890625	2	471.786579	941.558604	0.28074	0.00013245	-0.28212	-0.0001331	-0.0013767	-6.495E-07	471.7864556360115	57.933	1.226	57.916	57.631	58.857	-0.0172					111	44	4	0	0	0	0.00054609	5	14001	13956;14001;14051;14100;14153		149.99	45.195	1	7231200			15224	2700	8615	8616	19210;19211;19212;19213;19214	19211					0.0854873394232527
IPFREISP	8	Unmodified	_IPFREISP_					0	0	0			REV__nc|ENSG00000143494|Q86V25-3|VASH2	REV__nc|ENSG00000143494|Q86V25-3|VASH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.32086181640625	2	479.77146	957.528367	0.25904	0.00012428	-1.2528	-0.00060107	-0.9938	-0.0004768	479.77104539841645	53.868	0.62708	53.925	53.638	54.265	0.056259					34	23	2	0	0	0	0.34039	1	12676	12676		15.847	2.3393	1	208620	+		15225	16184	8616	8617	19215	19215					0.04790375277127623
IPFREISP	8	Unmodified	_IPFREISP_					0	0	0			REV__nc|ENSG00000143494|Q86V25-3|VASH2	REV__nc|ENSG00000143494|Q86V25-3|VASH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.77146	957.528367	0.40191	0.00019282	-0.91028	-0.00043672	-0.50837	-0.0002439	479.7711497860187	54.086	0.57357	54.07	53.709	54.282	-0.015923	0.077806	0.00020583	NaN	15.847	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260350	+		15226	16184	8616	8617							0.04790375277127623
IPFRLREI	8	Unmodified	_IPFRLREI_					0	0	0		ENSG00000185298|ENST00000329214|CCDC137	ENSG00000185298|ENST00000329214|CCDC137	ENSG00000185298|ENST00000329214|CCDC137	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.32177734375	2	522.321651	1042.62875	0.72414	0.00037823	0.22118	0.00011553	0.94532	0.00049376	522.3215826216032	47.879	0.92248	47.879	47.634	48.556	0					69	32	3	0	0	0	0.095164	2	10883	10883;10934		61.357	19.263	1	6104000			15227	7522	8617	8618	19216;19217	19216					0.10914032330811096
IPFRLREI	8	Unmodified	_IPFRLREI_					0	0	0		ENSG00000185298|ENST00000329214|CCDC137	ENSG00000185298|ENST00000329214|CCDC137	ENSG00000185298|ENST00000329214|CCDC137	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.3218994140625	2	522.321651	1042.62875	0.80165	0.00041872	0.12634	6.5992E-05	0.92799	0.00048471	522.3215831451382	47.828	0.87776	47.876	47.594	48.472	0.04752					71	32	3	0	0	0	0.14707	3	10853	10853;10902;10963		52.268	19.185	1	6453700			15228	7522	8617	8618	19218;19219;19220	19218					0.10914032330811096
IPFRLREI	8	Unmodified	_IPFRLREI_					0	0	0		ENSG00000185298|ENST00000329214|CCDC137	ENSG00000185298|ENST00000329214|CCDC137	ENSG00000185298|ENST00000329214|CCDC137	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3218994140625	2	522.321651	1042.62875	0.64436	0.00033656	0.34685	0.00018117	0.99121	0.00051773	522.3216587892914	47.786	0.92162	47.83	47.587	48.509	0.043324					79	34	3	0	0	0	0.14707	2	10853	10853;10909		52.268	10.174	1	5151600			15229	7522	8617	8618	19221;19222	19221					0.10914032330811096
IPFRSLVNL	9	Unmodified	_IPFRSLVNL_					0	0	0			REV__nc|ENSG00000173124|Q6P461-2|ACSM6	REV__nc|ENSG00000173124|Q6P461-2|ACSM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.8221435546875	2	529.821484	1057.62842	0.71434	0.00037847	0.81213	0.00043029	1.5265	0.00080876	529.8215459586107	63.99	0.62094	63.99	63.695	64.316	0					46	22	3	0	0	0	0.20626	1	15935	15935		22.736	2.2827	1	720530	+		15230	17760	8618	8619	19223	19223					0.10190612610949756
IPFRSLVNL	9	Unmodified	_IPFRSLVNL_					0	0	0			REV__nc|ENSG00000173124|Q6P461-2|ACSM6	REV__nc|ENSG00000173124|Q6P461-2|ACSM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.8214721679688	2	529.821484	1057.62842	0.54339	0.0002879	0.55705	0.00029514	1.1004	0.00058304	529.821488301112	63.87	0.87572	63.963	63.678	64.554	0.09288					58	31	3	0	0	0	0.0098873	1	15824	15824		79.596	17.024	1	686000	+		15231	17760	8618	8619	19224	19224					0.10190612610949756
IPFRSLVNL	9	Unmodified	_IPFRSLVNL_					0	0	0			REV__nc|ENSG00000173124|Q6P461-2|ACSM6	REV__nc|ENSG00000173124|Q6P461-2|ACSM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.8218383789062	2	529.821484	1057.62842	0.70845	0.00037535	0.5801	0.00030735	1.2886	0.0006827	529.8214779292073	64.025	0.6436	64.016	63.745	64.389	-0.0095291					51	23	3	0	0	0	0.0098873	1	15872	15872		79.596	29.663	1	605300	+		15232	17760	8618	8619	19225	19225					0.10190612610949756
IPFSGALEL	9	Unmodified	_IPFSGALEL_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000396387.2_1_22:42503789-42504386:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7656555175781	2	473.765843	945.517133	0.55172	0.00026139	1.1233	0.0005322	1.6751	0.00079358	473.7657640133571	77.927	0.93062	77.927	77.555	78.486	0					61	34	2	0	0	0	0.22188	1	20179	20179		20.454	1.1966	1	405950			15233	4149	8619	8620	19226	19226					0.042195531829861466
IPFSGALEL	9	Unmodified	_IPFSGALEL_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000396387.2_1_22:42503789-42504386:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.76580810546875	2	473.765843	945.517133	0.55369	0.00026232	0.95644	0.00045313	1.5101	0.00071545	473.76576062049384	77.892	1.4657	77.947	77.06	78.525	0.055412					72	52	2	0	0	0	0.18803	1	20140	20140		25.399	2.2509	1	398190			15234	4149	8619	8620	19227	19227					0.042195531829861466
IPFSGALEL	9	Unmodified	_IPFSGALEL_					0	0	0		ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000396387.2_1_22:42503789-42504386:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	ENST00000462000.1_1_2:174945834-174988397:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7657165527344	2	473.765843	945.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.097	1	78.066	77.566	78.566	-0.030434								0	0	0	0.19013	1	20173	20173		25.399	2.663	1				15235	4149	8619	8620	19228	19228					0.042195531829861466
IPFTKIKSKWI	11	Unmodified	_IPFTKIKSKWI_					0	0	0		L1MC1_dup4818|chr5:157018062-157020331:+|1.2048631609900489|0.0442921674053822|4.77|515.0|9|1|sense	L1MC1_dup4818|chr5:157018062-157020331:+|1.2048631609900489|0.0442921674053822|4.77|515.0|9|1|sense	L1MC1_dup4818|chr5:157018062-157020331:+|1.2048631609900489|0.0442921674053822|4.77|515.0|9|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2669677734375	3	454.283224	1359.82784	0.31982	0.00014529	1.1349	0.00051558	1.4548	0.00066087	454.2835909194607	87.081	0.23149	87.081	86.938	87.17	0					26	8	4	0	0	0	0.33277	1	22922	22922		3.0723	1.6171	1	958990			15236	12458	8620	8621	19229	19229					0.1623224783884325
IPFTPVQLF	9	Unmodified	_IPFTPVQLF_					0	0	0		nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6;nc|ENSG00000119121|Q9BX84-5|TRPM6;nc|ENSG00000119121|Q9BX84-6|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3193969726562	2	531.305136	1060.59572	0.7361	0.00039109	0.015564	8.2692E-06	0.75166	0.00039936	531.3047520106758	84.537	0.73356	84.537	84.137	84.871	0					89	27	5	0	0	0	0.1669	2	22228	22222;22228		28.487	5.3384	1	472330			15237	2859	8621	8622	19230;19231	19231					0.06784405488065204
IPFTPVQLF	9	Unmodified	_IPFTPVQLF_					0	0	0		nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6;nc|ENSG00000119121|Q9BX84-5|TRPM6;nc|ENSG00000119121|Q9BX84-6|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3050537109375	2	531.305136	1060.59572	0.60293	0.00032034	0.38052	0.00020217	0.98346	0.00052251	531.3050452051087	84.356	1.0015	84.434	84.123	85.125	0.077095					112	39	5	0	0	0	0.155	2	22090	22090;22192		30.225	5.5509	1	405020			15238	2859	8621	8622	19232;19233	19232					0.06784405488065204
IPFTPVQLF	9	Unmodified	_IPFTPVQLF_					0	0	0		nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6;nc|ENSG00000119121|Q9BX84-5|TRPM6;nc|ENSG00000119121|Q9BX84-6|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3187255859375	2	531.305136	1060.59572	0.6893	0.00036623	0.32259	0.00017139	1.0119	0.00053762	531.3049542209161	84.422	0.87943	84.407	84.135	85.014	-0.015457					97	36	5	0	0	0	0.21303	1	22212	22212		21.747	9.2151	1	463870			15239	2859	8621	8622	19234	19234					0.06784405488065204
IPFTRLPI	8	Unmodified	_IPFTRLPI_					0	0	0		nc|ENSG00000157765|O95436-2|SLC34A2;ENSG00000157765|ENST00000382051|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.79998779296875	2	478.80002	955.585488	0.39705	0.00019011	-0.085219	-4.0803E-05	0.31184	0.00014931	478.8000870356644	64.14	0.67789	64.233	63.822	64.5	0.09288					40	24	2	0	0	0	0.16948	1	15900	15900		48.346	2.5959	1	595040			15240	5324	8622	8623	19235	19235					0.10591842553515107
IPFTSINIS	9	Unmodified	_IPFTSINIS_					0	0	0			REV__ENST00000541475.5_1_11:114278100-114278526:+|nuORF	REV__ENST00000541475.5_1_11:114278100-114278526:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.26580810546875	2	496.276575	990.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.389	1	79.36	78.86	79.86	-0.028931								0	0	0	0.23367	1	20568	20568		11.64	0.81637	1		+		15241	22128	8623	8624	19236	19236					0.04294938211717181
IPFTTPTTI	9	Unmodified	_IPFTTPTTI_					0	0	0		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.77923583984375	2	495.778951	989.543348	0.44774	0.00022198	-0.6309	-0.00031279	-0.18316	-9.0805E-05	495.7788587419946	66.773	0.95374	66.773	66.211	67.165	0					88	33	5	0	0	0	0.1669	1	16708	16708		28.487	5.3384	1	874580			15242	6397	8624	8625	19237	19237					0.04815822354464672
IPFTTPTTI	9	Unmodified	_IPFTTPTTI_					0	0	0		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7790222167969	2	495.778951	989.543348	0.41908	0.00020777	-0.81482	-0.00040397	-0.39573	-0.0001962	495.7788366916165	66.681	1.1695	66.765	66.05	67.219	0.083832					101	41	5	0	0	0	0.12846	1	16679	16679		34.102	9.4286	1	787880			15243	6397	8624	8625	19238	19238					0.04815822354464672
IPFTTPTTI	9	Unmodified	_IPFTTPTTI_					0	0	0		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7793273925781	2	495.778951	989.543348	0.22561	0.00011185	-0.27187	-0.00013479	-0.046263	-2.2936E-05	495.7790274900912	66.783	0.92487	66.769	66.193	67.118	-0.013596					93	33	4	0	0	0	0.10197	1	16706	16706		37.974	19.839	1	876540			15244	6397	8624	8625	19239	19239					0.04815822354464672
IPFVAPPLV	9	Unmodified	_IPFVAPPLV_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7971496582031	2	476.796946	951.57934	0.43032	0.00020517	-0.083807	-3.9959E-05	0.34651	0.00016522	476.79679864643	83.564	0.75983	83.564	83.148	83.908	0					82	28	4	0	0	0	0.069231	2	21856	21856;21912		45.75	17.577	1	634350			15245	5416	8625	8626	19240;19241	19240					0.10161324321973098
IPFVAPPLV	9	Unmodified	_IPFVAPPLV_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7969665527344	2	476.796946	951.57934	0.41864	0.00019961	-0.10807	-5.1526E-05	0.31058	0.00014808	476.79689820477745	83.424	0.86931	83.501	83.056	83.925	0.077095					89	33	4	0	0	0	0.11229	2	21825	21825;21871		36.466	15.595	1	578910			15246	5416	8625	8626	19242;19243	19242					0.10161324321973098
IPFVAPPLV	9	Unmodified	_IPFVAPPLV_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.797119140625	2	476.796946	951.57934	0.45511	0.000217	-0.17796	-8.4849E-05	0.27716	0.00013215	476.7968557049054	83.563	0.62905	83.546	83.267	83.896	-0.01683					89	26	4	0	0	0	0.11229	2	21851	21851;21895		36.466	15.595	1	674290			15247	5416	8625	8626	19244;19245	19244					0.10161324321973098
IPFVGVVKV	9	Unmodified	_IPFVGVVKV_					0	0	0		ENST00000549030.1_1_14:105856139-105857603:+|nuORF;ENST00000547903.1_1_14:105848293-105857603:+|nuORF;ENST00000551743.5_1_14:105849507-105861006:+|nuORF;nc|ENSG00000179364|Q86VP3-4|PACS2;nc|ENSG00000179364|Q86VP3|PACS2;ENSG00000179364|ENST00000447393|PACS2	ENST00000549030.1_1_14:105856139-105857603:+|nuORF	ENST00000549030.1_1_14:105856139-105857603:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.79998779296875	2	479.310221	956.605889	0.48458	0.00023226	-0.45399	-0.0002176	0.030591	1.4662E-05	479.3100779751061	64.159	0.4261	64.149	64.017	64.443	-0.0095367					23	15	2	0	0	0	0.19839	1	15930	15930		21.747	0.87544	1	147000			15248	7118	8626	8627	19246	19246					0.12585013213333696
IPFVKPAP	8	Unmodified	_IPFVKPAP_					0	0	0		ENSG00000031698|ENST00000234677|SARS1;ENST00000468588.1_1_1:109779820-109780507:+|nuORF	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.779296875	2	434.768189	867.521825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.928	1	34.928	34.428	35.428	0								0	0	0	0.33941	1	6941	6941		19.439	4.8573	1				15249	552	8627	8628	19247	19247					0.08276482116411898
IPFVKPAP	8	Unmodified	_IPFVKPAP_					0	0	0		ENSG00000031698|ENST00000234677|SARS1;ENST00000468588.1_1_1:109779820-109780507:+|nuORF	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.77960205078125	2	434.768189	867.521825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.081	1	35.081	34.581	35.581	0								0	0	0	0.34229	1	6987	6987		18.135	6.4947	1				15250	552	8627	8628	19248	19248					0.08276482116411898
IPFYIQALL	9	Unmodified	_IPFYIQALL_					0	0	0		nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF	nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3027954101562	2	539.320786	1076.62702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.792	1	89.792	89.292	90.292	0								0	0	0	0.24077	1	23775	23775		9.3474	0.75416	1				15251	2692	8628	8629	19249	19249					0.0917697852216861
IPGELLTL	8	Unmodified	_IPGELLTL_					0	0	0		nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6	nc|ENSG00000225697|Q9BXS9-6|SLC26A6	nc|ENSG00000225697|Q9BXS9-6|SLC26A6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2499694824219	2	428.262936	854.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.45	1	33.516	33.016	34.016	0.066704								0	0	0	0.35985	1	6484	6484		10.183	3.8293	1				15252	8447	8629	8630	19250	19250					0.0782445467133357
IPGELLTLI	9	Unmodified	_IPGELLTLI_					0	0	0		nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6	nc|ENSG00000225697|Q9BXS9-6|SLC26A6	nc|ENSG00000225697|Q9BXS9-6|SLC26A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.8160095214844	2	484.804968	967.595384	0.09609	4.6585E-05	0.3851	0.0001867	0.48119	0.00023328	484.80578083307944	26.393	0.30356	26.393	26.106	26.41	0					14	10	2	0	0	0	0.30623	1	4344	4344		7.9102	0	1	49342			15253	8447	8630	8631	19251	19251					0.11028985768246002
IPGERTGRLL	10	Unmodified	_IPGERTGRLL_					0	0	0			REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3328857421875	2	556.332747	1110.65094	0.28343	0.00015768	0.0074027	4.1183E-06	0.29083	0.0001618	556.3326015585834	32.405	0.46239	32.46	32.247	32.71	0.054371					40	16	3	0	0	0	0.37133	1	6197	6197		8.7454	0	1	423560	+		15254	15605	8631	8632	19252	19252					0.10004212008584545
IPGEVVLVL	9	Unmodified	_IPGEVVLVL_					0	0	0		nc|ENSG00000135502|Q8NG04-2|SLC26A10P;nc|ENSG00000135502|Q8NG04|SLC26A10P	nc|ENSG00000135502|Q8NG04-2|SLC26A10P	nc|ENSG00000135502|Q8NG04-2|SLC26A10P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7995910644531	2	469.799686	937.584819	0.24662	0.00011586	0.024128	1.1335E-05	0.27075	0.0001272	469.7995115860222	86.191	0.64021	86.191	85.931	86.571	0					49	25	3	0	0	0	0.1669	1	22671	22671		28.487	0	1	272940			15255	12713	8632	8633	19253	19253					0.11353003113799787
IPGEVVLVL	9	Unmodified	_IPGEVVLVL_					0	0	0		nc|ENSG00000135502|Q8NG04-2|SLC26A10P;nc|ENSG00000135502|Q8NG04|SLC26A10P	nc|ENSG00000135502|Q8NG04-2|SLC26A10P	nc|ENSG00000135502|Q8NG04-2|SLC26A10P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7996826171875	2	469.799686	937.584819	0.22743	0.00010685	0.057389	2.6961E-05	0.28482	0.00013381	469.799509867287	86.094	0.55409	86.178	85.888	86.442	0.084251					40	20	3	0	0	0	0.072844	2	22632	22632;22681		44.407	0	1	264470			15256	12713	8632	8633	19254;19255	19254					0.11353003113799787
IPGEVVLVL	9	Unmodified	_IPGEVVLVL_					0	0	0		nc|ENSG00000135502|Q8NG04-2|SLC26A10P;nc|ENSG00000135502|Q8NG04|SLC26A10P	nc|ENSG00000135502|Q8NG04-2|SLC26A10P	nc|ENSG00000135502|Q8NG04-2|SLC26A10P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.24285888671875	2	469.799686	937.584819	0.39025	0.00018334	-0.082897	-3.8945E-05	0.30735	0.00014439	469.79944630476507	86.201	0.56367	86.192	85.938	86.501	-0.0090027					36	21	2	0	0	0	0.19839	1	22658	22658		28.487	0	1	191410			15257	12713	8632	8633	19256	19256					0.11353003113799787
IPGFIPPK	8	Unmodified	_IPGFIPPK_					0	0	0			REV__ENSG00000244476|ENST00000472091|ERVFRD-1	REV__ENSG00000244476|ENST00000472091|ERVFRD-1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7794189453125	2	434.768189	867.521825	-1.1098	-0.00048249	-2.8363	-0.0012331	-3.946	-0.0017156	434.7670661010257	34.924	0.87716	34.999	34.576	35.454	0.075306					45	31	2	0	0	0	0.42446	1	6935	6935		14.582	1.0738	1	173490	+		15258	19203	8633	8634	19257	19257					0.08276482116423267
IPGFIPPK	8	Unmodified	_IPGFIPPK_					0	0	0			REV__ENSG00000244476|ENST00000472091|ERVFRD-1	REV__ENSG00000244476|ENST00000472091|ERVFRD-1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	434.768189	867.521825	-1.1098	-0.00048249	-2.8363	-0.0012331	-3.946	-0.0017156	434.7670661010257	34.924	0.87716	34.999	34.576	35.454	0.075306	0	0	NaN	14.582	45	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173490	+		15259	19203	8633	8634							0.08276482116423267
IPGFWVKAFL	10	Unmodified	_IPGFWVKAFL_					0	0	0		ENST00000556808.1_1_X:53112313-53114116:+|nuORF;TSPYL2|p.D585Gfs*41|1|0.04|ENSG00000184205|chrX:53086145-53086146|-/GTTTC|frameshift_variant;ENSG00000184205|ENST00000375442|TSPYL2	ENST00000556808.1_1_X:53112313-53114116:+|nuORF	ENST00000556808.1_1_X:53112313-53114116:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3431396484375	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.504	1	97.574	97.074	98.074	0.070465								0	0	0	0.3749	1	26092	26092		4.3292	0.73274	1				15260	7436	8634	8635	19258	19258					0.08828373650408139
IPGLATAYIHR	11	Unmodified	_IPGLATAYIHR_					0	0	0		ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3706665039062	2	606.348397	1210.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.16	1	113.15	112.65	113.65	-0.017303								0	0	0	0.38114	1	29419	29419		1.3295	0.80477	1				15261	3199	8635	8636	19259	19259					0.08532785042643809
IPGLYRGIT	9	Unmodified	_IPGLYRGIT_					0	0	0		nc|ENSG00000085491|Q6NUK1-2|SLC25A24;ENSG00000085491|ENST00000565488|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7502136230469	2	495.292559	988.570566	0.3454	0.00017108	3.7401	0.0018525	4.0855	0.0020235	495.29438664787574	67.069	0.28571	67.147	67.068	67.354	0.078041					13	9	2	0	0	0	0.25066	1	16827	16827		11.64	1.4569	1	107930			15262	12599	8636	8637	19260	19260					0.07582350685515848
IPGLYRGIT	9	Unmodified	_IPGLYRGIT_					0	0	0		nc|ENSG00000085491|Q6NUK1-2|SLC25A24;ENSG00000085491|ENST00000565488|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	495.292559	988.570566	0.18508	9.1669E-05	4.1692	0.002065	4.3543	0.0021567	495.29460253419603	67.171	0.50052	67.154	66.893	67.393	-0.016296	0.0033734	6.3776E-05	NaN	11.64	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87485			15263	12599	8636	8637							0.07582350685515848
IPGSSRDFRWK	11	Unmodified	_IPGSSRDFRWK_					0	0	0			REV__nc|ENSG00000155890|Q8IWZ5-2|TRIM42	REV__nc|ENSG00000155890|Q8IWZ5-2|TRIM42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.26910400390625	3	450.242199	1347.70477	0.21397	9.6336E-05	1.0001	0.00045027	1.214	0.0005466	450.24265690040085	30.637	0.44393	30.637	30.418	30.862	0					22	15	2	0	0	0	0.33169	1	5651	5651		3.8459	2.6311	1	107850	+		15264	16716	8637	8638	19261	19261					0.04482384440257192
IPGSSRDFRWK	11	Unmodified	_IPGSSRDFRWK_					0	0	0			REV__nc|ENSG00000155890|Q8IWZ5-2|TRIM42	REV__nc|ENSG00000155890|Q8IWZ5-2|TRIM42	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	450.242199	1347.70477	-0.0089654	-4.0366E-06	1.6017	0.00072117	1.5928	0.00071713	450.2429406619706	30.666	0.44523	30.694	30.448	30.893	0.027159	-0.0021858	0.00048929	NaN	3.8459	25	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111350	+		15265	16716	8637	8638							0.04482384440257192
IPGTMRLL	8	Unmodified	_IPGTMRLL_					0	0	0			REV__nc|ENSG00000127152|Q9C0K0-2|BCL11B	REV__nc|ENSG00000127152|Q9C0K0-2|BCL11B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2472839355469	2	450.770406	899.526258	0.26452	0.00011924	0.49224	0.00022189	0.75676	0.00034113	450.7702700103696	68.209	0.67612	68.19	67.808	68.484	-0.019157					26	23	2	0	0	0	0.3366	1	17066	17066		18.135	0	1	136180	+		15266	15331	8638	8639	19262	19262					0.07247623267699055
IPHAVFSLL	9	Unmodified	_IPHAVFSLL_					0	0	0		LRRC8C|p.D786Vfs*18|1|0.03|ENSG00000171488|chr1:89714926-89714927|-/TAGAGTTC|frameshift_variant;ENSG00000171488|ENST00000370454|LRRC8C	LRRC8C|p.D786Vfs*18|1|0.03|ENSG00000171488|chr1:89714926-89714927|-/TAGAGTTC|frameshift_variant	LRRC8C|p.D786Vfs*18|1|0.03|ENSG00000171488|chr1:89714926-89714927|-/TAGAGTTC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.22943115234375	2	498.797478	995.580402	0.23414	0.00011679	-0.45077	-0.00022484	-0.21663	-0.00010805	498.7972355703792	69.385	0.89082	69.385	68.924	69.815	0					50	31	2	0	0	0	0.18943	1	17525	17525		30.225	5.5509	1	465860			15267	6546	8639	8640	19263	19263					0.08243538690908281
IPHDETSILSL	11	Unmodified	_IPHDETSILSL_					0	0	0			REV__ENSG00000066185|ENST00000372565|ZMYND12	REV__ENSG00000066185|ENST00000372565|ZMYND12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.80615234375	2	612.82716	1223.63977	0.63475	0.00038899	-1.141	-0.00069921	-0.5062	-0.00031022	612.8261776640766	60.535	0.49298	60.535	60.387	60.88	0					27	17	2	0	0	0	0.32017	1	14875	14875		20.415	0	1	593370	+		15268	13677	8640	8641	19264	19264					0.036893451237801855
IPHDETSILSL	11	Unmodified	_IPHDETSILSL_					0	0	0			REV__ENSG00000066185|ENST00000372565|ZMYND12	REV__ENSG00000066185|ENST00000372565|ZMYND12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.82763671875	2	612.82716	1223.63977	0.61638	0.00037774	-0.86906	-0.00053258	-0.25268	-0.00015485	612.8265268167577	60.542	0.51192	60.533	60.326	60.838	-0.0094566					29	18	2	0	0	0	0.18241	1	14826	14826		32.786	0	1	712220	+		15269	13677	8640	8641	19265	19265					0.036893451237801855
IPHHKHAGHEQ	11	Unmodified	_IPHHKHAGHEQ_					0	0	0			REV__ENSG00000144015|ENST00000272395|TRIM43	REV__ENSG00000144015|ENST00000272395|TRIM43	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8880310058594	3	430.886527	1289.63775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.115	1	72.115	71.615	72.615	0								0	0	0	0.36137	1	18367	18367		2.6312	0.72486	1		+		15270	16214	8641	8642	19266	19266					0.004517739491802786
IPHIHKSLI	9	Unmodified	_IPHIHKSLI_					0	0	0		nc|ENSG00000105968|Q71UI9-4|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF;nc|ENSG00000105968|Q71UI9-3|H2AZ2	nc|ENSG00000105968|Q71UI9-4|H2AZ2	nc|ENSG00000105968|Q71UI9-4|H2AZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.329833984375	2	529.329476	1056.6444	0.59291	0.00031385	-0.18388	-9.7334E-05	0.40903	0.00021651	529.3293707473927	31.992	0.74999	31.992	31.719	32.469	0					57	26	3	0	0	0	0.0098873	1	6050	6050		79.596	43.469	1	703160			15271	2041	8642	8643	19267	19267					0.11834318847832037
IPHIHKSLI	9	Unmodified	_IPHIHKSLI_					0	0	0		nc|ENSG00000105968|Q71UI9-4|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF;nc|ENSG00000105968|Q71UI9-3|H2AZ2	nc|ENSG00000105968|Q71UI9-4|H2AZ2	nc|ENSG00000105968|Q71UI9-4|H2AZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3295288085938	2	529.329476	1056.6444	0.56869	0.00030103	-0.26127	-0.0001383	0.30742	0.00016273	529.3294153610321	31.901	0.75444	31.943	31.683	32.437	0.042366					47	26	2	0	0	0	0.018449	2	6063	6009;6063		66.457	18.708	1	1111700			15272	2041	8642	8643	19268;19269	19269					0.11834318847832037
IPHIHKSLI	9	Unmodified	_IPHIHKSLI_					0	0	0		nc|ENSG00000105968|Q71UI9-4|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF;nc|ENSG00000105968|Q71UI9-3|H2AZ2	nc|ENSG00000105968|Q71UI9-4|H2AZ2	nc|ENSG00000105968|Q71UI9-4|H2AZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3294677734375	2	529.329476	1056.6444	0.52423	0.00027749	-0.28605	-0.00015142	0.23818	0.00012607	529.3293420406795	31.891	0.89422	31.932	31.722	32.616	0.040991					57	31	2	0	0	0	0.015924	2	6024	6024;6078		70.332	25.475	1	762190			15273	2041	8642	8643	19270;19271	19270					0.11834318847832037
IPHPFGVSL	9	Unmodified	_IPHPFGVSL_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7745056152344	2	483.774003	965.533452	0.46334	0.00022415	-0.1096	-5.3022E-05	0.35374	0.00017113	483.7738838639353	60.56	0.56434	60.56	60.255	60.819	0					36	20	2	0	0	0	0.0030686	1	14798	14798		101.72	51.789	1	712270			15274	1183	8643	8644	19272	19272					0.04930679139772565
IPHPFGVSL	9	Unmodified	_IPHPFGVSL_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7739562988281	2	483.774003	965.533452	0.44112	0.0002134	-0.36616	-0.00017714	0.074967	3.6267E-05	483.77378248279143	60.434	0.52218	60.529	60.317	60.839	0.095093					31	18	2	0	0	0	0.015674	1	14777	14777		70.716	32.564	1	925070			15275	1183	8643	8644	19273	19273					0.04930679139772565
IPHPFGVSL	9	Unmodified	_IPHPFGVSL_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7740783691406	2	483.774003	965.533452	0.59731	0.00028896	-0.4241	-0.00020517	0.17321	8.3794E-05	483.77367697579615	60.508	0.61296	60.499	60.275	60.888	-0.0094566					42	22	2	0	0	0	0.0036555	1	14802	14802		97.075	52.668	1	1020900			15276	1183	8643	8644	19274	19274					0.04930679139772565
IPHPLVPFDGP	11	Unmodified	_IPHPLVPFDGP_					0	0	0		nc|ENSG00000118482|Q92576-2|PHF3;PHF3|p.K1984Vfs*4|1|0.04|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACT|frameshift_variant;PHF3|p.K1984Vfs*10|1|0.06|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACTAT|frameshift_variant;ENSG00000118482|ENST00000262043|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.2826538085938	2	594.824224	1187.63389	0.52412	0.00031176	0.10437	6.2082E-05	0.62849	0.00037384	594.8242309233789	38.507	0.51361	38.598	38.373	38.887	0.090881					30	18	3	0	0	0	0.32293	1	8102	8102		18.146	8.0724	1	288120			15277	2826	8644	8645	19275	19275					0.04758291402731629
IPHPLVPFDGP	11	Unmodified	_IPHPLVPFDGP_					0	0	0		nc|ENSG00000118482|Q92576-2|PHF3;PHF3|p.K1984Vfs*4|1|0.04|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACT|frameshift_variant;PHF3|p.K1984Vfs*10|1|0.06|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACTAT|frameshift_variant;ENSG00000118482|ENST00000262043|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	594.824224	1187.63389	0.18541	0.00011029	0.020185	1.2007E-05	0.2056	0.00012229	594.824196234372	38.527	0.41806	38.527	38.347	38.765	0	-0.046175	4.2231E-05	NaN	18.146	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196050			15278	2826	8644	8645							0.04758291402731629
IPHPLVPFDGP	11	Unmodified	_IPHPLVPFDGP_					0	0	0		nc|ENSG00000118482|Q92576-2|PHF3;PHF3|p.K1984Vfs*4|1|0.04|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACT|frameshift_variant;PHF3|p.K1984Vfs*10|1|0.06|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACTAT|frameshift_variant;ENSG00000118482|ENST00000262043|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	594.824224	1187.63389	0.49438	0.00029407	-0.1927	-0.00011462	0.30168	0.00017945	594.824153202731	38.497	0.46009	38.594	38.378	38.838	0.097527	0.021059	-0.00021103	NaN	18.146	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168780			15279	2826	8644	8645							0.04758291402731629
IPHRVFTL	8	Unmodified	_IPHRVFTL_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7960510253906	2	491.795269	981.575986	0.41999	0.00020655	1.1594	0.00057021	1.5794	0.00077676	491.7957679346913	46.916	1.2863	46.968	46.554	47.841	0.052574					73	47	2	0	0	0	0.43727	1	10664	10664		10.183	0	1	966680			15280	4967	8645	8646	19276	19276					0.08446074267999393
IPHRVFTL	8	Unmodified	_IPHRVFTL_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	491.795269	981.575986	0.65019	0.00031976	1.159	0.00056998	1.8092	0.00088974	491.79574230289245	47.027	0.98289	47.027	46.566	47.549	0	0.023993	0.00018293	NaN	10.183	66	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	941850			15281	4967	8645	8646							0.08446074267999393
IPHTHVPT	8	Unmodified	_IPHTHVPT_					0	0	0			REV__ENST00000233121.6_1_2:27249234-27249549:+|nuORF	REV__ENST00000233121.6_1_2:27249234-27249549:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.2489013671875	2	451.248152	900.481751	0.25647	0.00011573	1.1053	0.00049876	1.3618	0.00061449	451.24874498649467	58.704	0.75428	58.704	58.269	59.024	0					53	25	3	0	0	0	0.4397	1	14289	14289		9.3474	0.75416	1	347750	+		15282	19469	8646	8647	19277	19277					0.02752935445869298
IPHTIDVL	8	Unmodified	_IPHTIDVL_					0	0	0			REV__ENST00000523482.5_1_8:20073892-20074135:+|nuORF	REV__ENST00000523482.5_1_8:20073892-20074135:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2669677734375	2	454.26601	906.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.999	1	86.999	86.499	87.499	0								0	0	0	0.29147	1	22922	22922		30.225	5.5509	1		+		15283	21931	8647	8648	19278	19278					0.06046972902856851
IPIDHTVI	8	Unmodified	_IPIDHTVI_					0	0	0			REV__HUS1|p.L192*|1|0.16|ENSG00000136273|chr7:47969284-47969284|A/-|frameshift_variant	REV__HUS1|p.L192*|1|0.16|ENSG00000136273|chr7:47969284-47969284|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.73974609375	2	454.26601	906.517468	0.36402	0.00016536	-0.95812	-0.00043524	-0.5941	-0.00026988	454.2654412576234	64.496	0.56918	64.496	64.238	64.807	0					24	20	2	0	0	0	0.33618	1	16000	16000		17.087	5.9721	1	118500	+		15284	15803	8648	8649	19279	19279					0.060469729028341135
IPIDHTVI	8	Unmodified	_IPIDHTVI_					0	0	0			REV__HUS1|p.L192*|1|0.16|ENSG00000136273|chr7:47969284-47969284|A/-|frameshift_variant	REV__HUS1|p.L192*|1|0.16|ENSG00000136273|chr7:47969284-47969284|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2669372558594	2	454.26601	906.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.901	1	86.988	86.488	87.488	0.08709								0	0	0	0.27914	1	22884	22884		32.117	0	1		+		15285	15803	8648	8649	19280	19280					0.060469729028341135
IPIDHTVI	8	Unmodified	_IPIDHTVI_					0	0	0			REV__HUS1|p.L192*|1|0.16|ENSG00000136273|chr7:47969284-47969284|A/-|frameshift_variant	REV__HUS1|p.L192*|1|0.16|ENSG00000136273|chr7:47969284-47969284|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2669372558594	2	454.26601	906.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.033	1	87.027	86.527	87.527	-0.0056229								0	0	0	0.27914	1	22915	22915		32.117	0	1		+		15286	15803	8648	8649	19281	19281					0.060469729028341135
IPIDWAVVG	9	Unmodified	_IPIDWAVVG_					0	0	0			REV__nc|ENSG00000172534|P51610-2|HCFC1	REV__nc|ENSG00000172534|P51610-2|HCFC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.800537109375	2	485.273835	968.533118	0.30235	0.00014672	0.29898	0.00014509	0.60133	0.00029181	485.27400536768164	81.647	1.5655	81.623	80.627	82.193	-0.02404					79	65	2	0	0	0	0.17949	1	21306	21306		24.674	3.8027	1	160980	+		15287	17721	8649	8650	19282	19282					0.04759259419893169
IPIFKRVF	8	Unmodified	_IPIFKRVF_					0	0	0		ENST00000441800.5_1_2:190593140-190625849:+|nuORF	ENST00000441800.5_1_2:190593140-190625849:+|nuORF	ENST00000441800.5_1_2:190593140-190625849:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.3343505859375	2	510.323663	1018.63277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.542	1	64.533	64.033	65.033	-0.0095291								0	0	0	0.35779	1	16038	16038		11.114	0	1				15288	10557	8650	8651	19283	19283					0.12420121824516173
IPIFWVSK	8	Unmodified	_IPIFWVSK_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.304443359375	2	495.294571	988.574589	0.58355	0.00028903	0.074743	3.702E-05	0.65829	0.00032605	495.2945288918069	79.253	0.070084	79.225	79.182	79.252	-0.028923					4	2	2	0	0	0	0.30749	1	20522	20522		28.173	1.832	1	19482			15289	6121	8651	8652	19284	19284					0.07984440179234298
IPIIRRRGSSL	11	Unmodified	_IPIIRRRGSSL_					0	0	0			REV__ENST00000357992.8_1_1:205585138-205585186:-|nuORF	REV__ENST00000357992.8_1_1:205585138-205585186:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.2701416015625	3	423.270089	1266.78844	-0.087113	-3.6872E-05	-0.082619	-3.497E-05	-0.16973	-7.1842E-05	423.27005456057555	22.118	0.90184	22.017	21.744	22.645	-0.10034					64	32	3	0	0	0	0.33025	1	3029	3029		9.2438	1.2984	1	246590	+		15290	20226	8652	8653	19285	19285					0.16571540607969837
IPIKRADML	9	Unmodified	_IPIKRADML_					0	0	0		ENST00000481096.6_1_X:51808851-51809606:-|nuORF;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4	ENST00000481096.6_1_X:51808851-51809606:-|nuORF	ENST00000481096.6_1_X:51808851-51809606:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8319702148438	2	528.815344	1055.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.765	1	43.842	43.342	44.342	0.077515								0	0	0	0.20953	1	9639	9639		19.439	3.5918	1				15291	5135	8653	8654	19286	19286					0.09055252876260056
IPIKRADML	9	Unmodified	_IPIKRADML_					0	0	0		ENST00000481096.6_1_X:51808851-51809606:-|nuORF;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4	ENST00000481096.6_1_X:51808851-51809606:-|nuORF	ENST00000481096.6_1_X:51808851-51809606:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8319091796875	2	528.815344	1055.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.756	1	43.84	43.34	44.34	0.083996								0	0	0	0.20953	1	9628	9628		19.439	5.9311	1				15292	5135	8653	8654	19287	19287					0.09055252876260056
IPIKRQDKER	10	Unmodified	_IPIKRQDKER_					0	0	0			REV__nc|ENSG00000002745|Q9UBV4-2|WNT16	REV__nc|ENSG00000002745|Q9UBV4-2|WNT16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8833618164062	2	641.883136	1281.75172	0.010778	6.918E-06	0.051593	3.3117E-05	0.062371	4.0035E-05	641.8829400044114	98.645	0.61124	98.645	98.334	98.945	0					113	70	2	0	0	0	0.41673	1	26431	26431		0.40072	0	1	117030	+		15293	13319	8654	8655	19288	19288					0.12211243991396259
IPIPTLPSV	9	Unmodified	_IPIPTLPSV_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.22125244140625	2	468.791861	935.569169	0.43951	0.00020604	-0.5432	-0.00025465	-0.1037	-4.8613E-05	468.79162888826085	78.354	0.63627	78.354	78.062	78.699	0					35	23	2	0	0	0	0.25066	1	20215	20215		11.64	3.7301	1	163040			15294	818	8655	8656	19289	19289					0.09880716596751427
IPIPTLPSV	9	Unmodified	_IPIPTLPSV_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7916564941406	2	468.791861	935.569169	0.38442	0.00018021	-0.32061	-0.0001503	0.063813	2.9915E-05	468.79167682042845	78.307	0.73029	78.365	78.03	78.76	0.058151					41	26	2	0	0	0	0.019896	1	20246	20246		64.236	31.931	1	214400			15295	818	8655	8656	19290	19290					0.09880716596751427
IPIPTLPSV	9	Unmodified	_IPIPTLPSV_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7921447753906	2	468.791861	935.569169	0.68832	0.00032268	-0.6154	-0.00028849	0.072923	3.4186E-05	468.79156702320995	78.39	0.53751	78.359	78.093	78.63	-0.030434					37	20	3	0	0	0	0.062246	1	20287	20287		48.346	26.599	1	214500			15296	818	8655	8656	19291	19291					0.09880716596751427
IPISFAAPAL	10	Unmodified	_IPISFAAPAL_					0	0	0		ENST00000326956.11_1_1:54692806-54822351:-|nuORF	ENST00000326956.11_1_1:54692806-54822351:-|nuORF	ENST00000326956.11_1_1:54692806-54822351:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.79876708984375	2	500.29731	998.580068	0.46677	0.00023352	-0.73843	-0.00036944	-0.27166	-0.00013591	500.79848605605815	89.248	0.67709	89.248	88.863	89.541	0					42	32	2	0	0	0	0.38233	1	23603	23603		6.7232	6.7232	1	244370			15297	9421	8656	8657	19292	19292					0.08072118971040254
IPISFAAPAL	10	Unmodified	_IPISFAAPAL_					0	0	0		ENST00000326956.11_1_1:54692806-54822351:-|nuORF	ENST00000326956.11_1_1:54692806-54822351:-|nuORF	ENST00000326956.11_1_1:54692806-54822351:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	500.29731	998.580068	0.46677	0.00023352	-0.73843	-0.00036944	-0.27166	-0.00013591	500.79848605605815	89.248	0.67709	89.248	88.863	89.541	0	0	0	NaN	6.7232	42	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244370			15298	9421	8656	8657							0.08072118971040254
IPISLHTSL	9	Unmodified	_IPISLHTSL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7416076660156	2	490.792392	979.570232	0.66346	0.00032562	0.33397	0.00016391	0.99743	0.00048953	490.7923888639979	54.577	0.6236	54.577	54.268	54.891	0					52	22	4	0	0	0	0.0031412	1	12954	12954		108	47.607	1	631040			15299	13007	8657	8658	19293	19293					0.07962930965663872
IPISLHTSL	9	Unmodified	_IPISLHTSL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.74188232421875	2	490.792392	979.570232	0.62113	0.00030484	0.11357	5.574E-05	0.7347	0.00036058	490.79234437317285	54.534	0.7226	54.597	54.382	55.105	0.063206					53	26	3	0	0	0	0.0031412	1	12929	12929		108	47.607	1	725680			15300	13007	8657	8658	19294	19294					0.07962930965663872
IPISLHTSL	9	Unmodified	_IPISLHTSL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7418212890625	2	490.792392	979.570232	0.61245	0.00030058	0.021023	1.0318E-05	0.63347	0.0003109	490.79238111342164	54.587	0.66651	54.571	54.361	55.028	-0.015923					39	23	2	0	0	0	0.00072007	1	12951	12951		120.45	49.317	1	763010			15301	13007	8657	8658	19295	19295					0.07962930965663872
IPKALAGPLS	10	Unmodified	_IPKALAGPLS_					0	0	0			REV__nc|ENSG00000135111|O15119-3|TBX3	REV__nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.3023681640625	2	483.80276	965.590967	0.052608	2.5452E-05	-1.3027	-0.00063027	-1.2501	-0.00060482	483.80284938448915	64.982	1.2484	64.971	64.578	65.827	-0.01133					121	45	4	0	0	0	0.36002	1	16115	16115		10.824	0	1	2069500	+		15302	15723	8658	8659	19296	19296					0.10679521345332432
IPKDNRLYL	9	Unmodified	_IPKDNRLYL_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.3297729492188	2	566.329673	1130.64479	0.43912	0.00024868	-0.28481	-0.0001613	0.1543	8.7387E-05	566.3296562050101	37.694	0.79174	37.785	37.362	38.153	0.090881					49	28	2	0	0	0	0.053988	1	7778	7778		51.415	11.466	1	438230			15303	7453	8659	8660	19297	19297					0.08469693777033172
IPKDNRLYL	9	Unmodified	_IPKDNRLYL_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.3296508789062	2	566.329673	1130.64479	0.25659	0.00014532	-0.0043627	-2.4707E-06	0.25223	0.00014285	566.3299454364438	37.641	0.75651	37.739	37.28	38.037	0.097527					53	27	3	0	0	0	0.13296	1	7741	7741		33.445	7.1768	1	317200			15304	7453	8659	8660	19298	19298					0.08469693777033172
IPKDNRLYL	9	Unmodified	_IPKDNRLYL_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	566.329673	1130.64479	0.46306	0.00026224	-0.44579	-0.00025246	0.017265	9.7777E-06	566.3297723822096	37.858	1.0103	37.858	37.285	38.295	0	0.064254	-0.00020998	NaN	51.415	60	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318070			15305	7453	8659	8660							0.08469693777033172
IPKEHHRF	8	Unmodified	_IPKEHHRF_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8172607421875	2	532.293425	1062.5723	0.92724	0.00049356	2.6587	0.0014152	3.586	0.0019088	532.2945440422286	77.627	0.43932	77.596	77.43	77.869	-0.031334					17	15	2	0	0	0	0.34092	1	20027	20027		8.5933	0	1	79798			15306	2669	8660	8661	19299	19299					0.04351404494127564
IPKEVDKI	8	Unmodified	_IPKEVDKI_					0	0	0		nc|ENSG00000126787|Q15398-1|DLGAP5;nc|ENSG00000126787|Q15398-3|DLGAP5;ENSG00000126787|ENST00000247191|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.28692626953125	2	471.286943	940.559333	0.37987	0.00017903	-0.99574	-0.00046928	-0.61587	-0.00029025	471.2867271769	59.513	0.56522	59.502	59.174	59.739	-0.011486					30	19	2	0	0	0	0.34039	1	14536	14536		15.847	1.0089	1	276230			15307	3290	8661	8662	19300	19300					0.0866752859137705
IPKEVDKI	8	Unmodified	_IPKEVDKI_					0	0	0		nc|ENSG00000126787|Q15398-1|DLGAP5;nc|ENSG00000126787|Q15398-3|DLGAP5;ENSG00000126787|ENST00000247191|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	nc|ENSG00000126787|Q15398-1|DLGAP5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	471.286943	940.559333	0.050444	2.3774E-05	-0.62345	-0.00029383	-0.57301	-0.00027005	471.2867389662998	59.486	0.55608	59.581	59.242	59.798	0.095089	0.039681	0.00012139	NaN	15.847	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197830			15308	3290	8661	8662							0.0866752859137705
IPKFAVATL	9	Unmodified	_IPKFAVATL_					0	0	0		ENST00000575643.1_1_17:4701246-4701714:+|nuORF;ENSG00000142507|ENST00000270586|PSMB6	ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENST00000575643.1_1_17:4701246-4701714:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2999572753906	2	480.299853	958.585153	0.23284	0.00011184	-0.22398	-0.00010758	0.0088675	4.259E-06	480.2998297491317	58.692	1.032	58.692	58.413	59.445	0					78	35	3	0	0	0	0.003317	2	14232	14232;14285		99.755	53.734	1	1504300			15309	4445	8662	8663	19301;19302	19301					0.10420422833658449
IPKFAVATL	9	Unmodified	_IPKFAVATL_					0	0	0		ENST00000575643.1_1_17:4701246-4701714:+|nuORF;ENSG00000142507|ENST00000270586|PSMB6	ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENST00000575643.1_1_17:4701246-4701714:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2999572753906	2	480.299853	958.585153	0.29682	0.00014256	-0.35373	-0.0001699	-0.056915	-2.7336E-05	480.29976872953665	58.597	0.89615	58.689	58.366	59.262	0.091305					76	31	3	0	0	0	0.003317	2	14176	14176;14227		99.755	53.734	1	1293500			15310	4445	8662	8663	19303;19304	19303					0.10420422833658449
IPKFAVATL	9	Unmodified	_IPKFAVATL_					0	0	0		ENST00000575643.1_1_17:4701246-4701714:+|nuORF;ENSG00000142507|ENST00000270586|PSMB6	ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENST00000575643.1_1_17:4701246-4701714:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2999267578125	2	480.299853	958.585153	0.44471	0.00021359	-0.50326	-0.00024172	-0.058552	-2.8123E-05	480.2996596493443	58.666	0.83197	58.652	58.416	59.248	-0.014267					70	29	4	0	0	0	0.003317	2	14222	14222;14272		99.755	53.734	1	1434100			15311	4445	8662	8663	19305;19306	19305					0.10420422833658449
IPKKHISQI	9	Unmodified	_IPKKHISQI_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3346557617188	2	532.334759	1062.65496	0.41938	0.00022325	-0.075508	-4.0195E-05	0.34388	0.00018306	532.3347208235074	17.755	0.6793	17.755	17.537	18.216	0					45	22	3	0	0	0	0.18378	2	1709	1709;1761		26.021	12.978	1	155030			15312	6365	8663	8664	19307;19308	19307					0.12614301502276248
IPKKHISQI	9	Unmodified	_IPKKHISQI_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.334716796875	2	532.334759	1062.65496	0.16913	9.0035E-05	-0.015916	-8.4729E-06	0.15322	8.1562E-05	532.3347371445178	17.946	0.54413	17.828	17.573	18.117	-0.11739					42	18	3	0	0	0	0.24247	1	1754	1754		17.443	8.0595	1	169980			15313	6365	8663	8664	19309	19309					0.12614301502276248
IPKKHISQI	9	Unmodified	_IPKKHISQI_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3350219726562	2	532.334759	1062.65496	0.29693	0.00015807	0.058911	3.136E-05	0.35584	0.00018943	532.3347574262204	17.937	0.63484	17.877	17.618	18.253	-0.060429					51	22	3	0	0	0	0.2141	1	1803	1803		21.59	8.5477	1	163170			15314	6365	8663	8664	19310	19310					0.12614301502276248
IPKNLLDSKSL	11	Unmodified	_IPKNLLDSKSL_					0	0	0		ENSG00000099331|ENST00000682292|MYO9B;nc|ENSG00000099331|Q13459-2|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	ENSG00000099331|ENST00000682292|MYO9B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.90533447265625	3	409.915089	1226.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.663	1	30.663	30.163	31.163	0								0	0	0	0.32276	1	5639	5639		14.218	1.9906	1				15315	1483	8664	8665	19311	19311					0.11914501291471424
IPKPLNPAL	9	Unmodified	_IPKPLNPAL_					0	0	0		ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2273864746094	2	481.805303	961.596052	-0.079117	-3.8119E-05	-0.73182	-0.00035259	-0.81094	-0.00039071	481.8048408127309	46.38	0.56421	46.38	46.111	46.675	0					33	20	2	0	0	0	0.16284	1	10419	10419		37.974	11.09	1	868820			15316	6100	8665	8666	19312	19312					0.11371825207925212
IPKPLNPAL	9	Unmodified	_IPKPLNPAL_					0	0	0		ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.8050231933594	2	481.805303	961.596052	0.26355	0.00012698	-0.76991	-0.00037095	-0.50637	-0.00024397	481.804783096036	46.367	0.45799	46.423	46.255	46.713	0.055565					38	16	3	0	0	0	0.019896	1	10465	10465		64.236	30.134	1	724450			15317	6100	8665	8666	19313	19313					0.11371825207925212
IPKPLNPAL	9	Unmodified	_IPKPLNPAL_					0	0	0		ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.8049621582031	2	481.805303	961.596052	0.08659	4.1719E-05	-0.51602	-0.00024862	-0.42943	-0.0002069	481.8048723904049	46.371	0.51967	46.425	46.189	46.709	0.054371					37	18	3	0	0	0	0.027237	1	10450	10450		61.357	23.383	1	889850			15318	6100	8665	8666	19314	19314					0.11371825207925212
IPKPPDLLQL	10	Unmodified	_IPKPPDLLQL_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.350341796875	2	567.350074	1132.6856	0.10245	5.8125E-05	0.17654	0.00010016	0.27899	0.00015829	567.3501733439858	69.407	0.9153	69.407	68.9	69.815	0					73	32	3	0	0	0	0.040516	2	17546	17546;17569		61.09	13.358	1	686640			15319	3785	8666	8667	19315;19316	19315					0.12456035096670348
IPKPPDLLQL	10	Unmodified	_IPKPPDLLQL_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.8317260742188	2	567.350074	1132.6856	0.31862	0.00018077	-0.1817	-0.00010308	0.13693	7.7687E-05	567.3499723046274	69.409	1.0093	69.475	68.958	69.967	0.06604					74	35	3	0	0	0	0.19793	1	17554	17554		32.898	4.6641	1	499640			15320	3785	8666	8667	19317	19317					0.12456035096670348
IPKPPDLLQL	10	Unmodified	_IPKPPDLLQL_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2794189453125	2	567.350074	1132.6856	0.15894	9.0172E-05	-0.0037342	-2.1186E-06	0.1552	8.8054E-05	567.3500357306059	69.431	0.85771	69.409	68.946	69.804	-0.022087					70	30	3	0	0	0	0.12729	1	17550	17550		46.022	8.9477	1	512330			15321	3785	8666	8667	19318	19318					0.12456035096670348
IPKQFVPA	8	Unmodified	_IPKQFVPA_					0	0	0		nc|ENSG00000168827|Q96RP9-2|GFM1;ENST00000477721.1_1_3:158399847-158408148:+|nuORF;ENSG00000168827|ENST00000486715|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.26959228515625	2	450.271096	898.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.633	1	78.602	78.102	79.102	-0.030434								0	0	0	0.34752	1	20338	20338		15.768	6.4208	1				15322	12833	8667	8668	19319	19319					0.07431580628076517
IPKQLLTR	8	Unmodified	_IPKQLLTR_					0	0	0		ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.81646728515625	2	484.816202	967.617851	0.42077	0.00020399	-0.1269	-6.1523E-05	0.29387	0.00014247	484.8160714190799	26.498	0.65667	26.476	26.236	26.893	-0.022238					59	22	3	0	0	0	0.42077	1	4430	4430		15.847	3.3156	1	493260			15323	2101	8668	8669	19320	19320					0.13274629956504214
IPKQVSISF	9	Unmodified	_IPKQVSISF_					0	0	0		ENSG00000169251|ENST00000351193|NMD3;NMD3|p.Q70Rfs*4|1|0.26|ENSG00000169251|chr3:161227276-161227276|A/-|frameshift_variant;ENST00000473909.5_1_3:160939100-160952664:+|nuORF	ENSG00000169251|ENST00000351193|NMD3	ENSG00000169251|ENST00000351193|NMD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8003845214844	2	509.800217	1017.58588	0.36481	0.00018598	0.11504	5.8646E-05	0.47985	0.00024463	509.8002457989355	52.449	0.96308	52.449	51.997	52.96	0					89	31	4	0	0	0	0.0010968	4	12342	12292;12324;12342;12399		121.53	32.133	1	7746300			15324	6344	8669	8670	19321;19322;19323;19324	19323					0.07779217482720924
IPKQVSISF	9	Unmodified	_IPKQVSISF_					0	0	0		ENSG00000169251|ENST00000351193|NMD3;NMD3|p.Q70Rfs*4|1|0.26|ENSG00000169251|chr3:161227276-161227276|A/-|frameshift_variant;ENST00000473909.5_1_3:160939100-160952664:+|nuORF	ENSG00000169251|ENST00000351193|NMD3	ENSG00000169251|ENST00000351193|NMD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7879943847656	2	509.800217	1017.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.108	1	53.108	52.608	53.608	0								0	0	0	0.171	1	12518	12518		29.841	3.5724	1				15325	6344	8669	8670	19325	19325					0.07779217482720924
IPKQVSISF	9	Unmodified	_IPKQVSISF_					0	0	0		ENSG00000169251|ENST00000351193|NMD3;NMD3|p.Q70Rfs*4|1|0.26|ENSG00000169251|chr3:161227276-161227276|A/-|frameshift_variant;ENST00000473909.5_1_3:160939100-160952664:+|nuORF	ENSG00000169251|ENST00000351193|NMD3	ENSG00000169251|ENST00000351193|NMD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8002624511719	2	509.800217	1017.58588	0.34595	0.00017637	0.16468	8.3952E-05	0.51063	0.00026032	509.8002577607538	52.372	0.92487	52.423	52.036	52.96	0.050571					100	31	4	0	0	0	0.001957	5	12293	12268;12293;12316;12422;12453		110.55	30.956	1	7121900			15326	6344	8669	8670	19326;19327;19328;19329;19330	19327					0.07779217482720924
IPKQVSISF	9	Unmodified	_IPKQVSISF_					0	0	0		ENSG00000169251|ENST00000351193|NMD3;NMD3|p.Q70Rfs*4|1|0.26|ENSG00000169251|chr3:161227276-161227276|A/-|frameshift_variant;ENST00000473909.5_1_3:160939100-160952664:+|nuORF	ENSG00000169251|ENST00000351193|NMD3	ENSG00000169251|ENST00000351193|NMD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8007507324219	2	509.800217	1017.58588	0.15714	8.011E-05	0.45655	0.00023275	0.61369	0.00031286	509.8004367746199	52.534	1.117	52.533	52.034	53.151	-0.00081253					108	35	4	0	0	0	0.0010968	4	12311	12311;12325;12411;12514		121.53	32.133	1	9005400			15327	6344	8669	8670	19331;19332;19333;19334	19331					0.07779217482720924
IPKRIRSAL	9	Unmodified	_IPKRIRSAL_					0	0	0		ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.30615234375	2	527.3482	1052.68185	0.25061	0.00013216	-0.1443	-7.6094E-05	0.10632	5.6067E-05	527.3480115600456	25.199	0.44721	25.143	24.918	25.365	-0.055931					32	15	3	0	0	0	0.25431	1	3969	3969		9.3831	0	1	134320			15328	3855	8670	8671	19335	19335					0.1576141011346408
IPKRIRSAL	9	Unmodified	_IPKRIRSAL_					0	0	0		ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3062744140625	2	527.3482	1052.68185	0.065151	3.4357E-05	-0.015745	-8.3031E-06	0.049406	2.6054E-05	527.3481579680367	25.182	0.42544	25.15	24.953	25.378	-0.031408					31	14	3	0	0	0	0.25779	1	3992	3992		6.2058	0	1	118060			15329	3855	8670	8671	19336	19336					0.1576141011346408
IPKRRMYF	8	Unmodified	_IPKRRMYF_					0	0	0		ENST00000465270.5_1_1:156374320-156391357:-|nuORF	ENST00000465270.5_1_1:156374320-156391357:-|nuORF	ENST00000465270.5_1_1:156374320-156391357:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8154296875	2	555.815679	1109.6168	0.33031	0.00018359	-0.90123	-0.00050092	-0.57093	-0.00031733	555.8152414162853	88.208	0.43037	88.206	87.952	88.382	-0.0028381					31	20	2	0	0	0	0.34297	1	23292	23292		6.3541	0	1	113160			15330	10794	8671	8672	19337	19337					0.0663809231596133
IPKSAVGEL	9	Unmodified	_IPKSAVGEL_					0	0	0		nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7;ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF	nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000160255|ENST00000652462|ITGB2	nc|ENSG00000139626|P26010-2|ITGB7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2712097167969	2	457.271293	912.528032	0.51298	0.00023457	-0.2772	-0.00012675	0.23579	0.00010782	457.2710113914765	37.33	0.78262	37.33	37.063	37.846	0					64	27	3	0	0	0	0.01909	2	7654	7654;7732		65.474	17.725	1	1178700			15331	4250;5453	8672	8673	19338;19339	19338					0.06826955557278325
IPKSAVGEL	9	Unmodified	_IPKSAVGEL_					0	0	0		nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7;ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF	nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000160255|ENST00000652462|ITGB2	nc|ENSG00000139626|P26010-2|ITGB7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.271240234375	2	457.271293	912.528032	0.20002	9.1464E-05	0.12405	5.6724E-05	0.32407	0.00014819	457.2712440290142	37.25	0.83745	37.338	36.98	37.817	0.08741					64	30	3	0	0	0	0.017549	1	7609	7609		67.838	20.089	1	1063100			15332	4250;5453	8672	8673	19340	19340					0.06826955557278325
IPKSAVGEL	9	Unmodified	_IPKSAVGEL_					0	0	0		nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7;ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF	nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000160255|ENST00000652462|ITGB2	nc|ENSG00000139626|P26010-2|ITGB7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2712707519531	2	457.271293	912.528032	0.28844	0.00013189	0.040716	1.8618E-05	0.32915	0.00015051	457.2711641040547	37.204	0.73082	37.297	37.06	37.791	0.093014					57	26	3	0	0	0	0.20381	1	7608	7608		29.841	7.1043	1	1186600			15333	4250;5453	8672	8673	19341	19341					0.06826955557278325
IPKSAVGTL	9	Unmodified	_IPKSAVGTL_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.27374267578125	2	443.273835	884.533118	0.27144	0.00012032	-0.22543	-9.9927E-05	0.046014	2.0397E-05	443.27360640520044	35.621	0.98074	35.621	35.276	36.256	0					78	35	3	0	0	0	0.0028542	1	7136	7136		103.42	31.497	1	2403500			15334	4903	8673	8674	19342	19342					0.08623259419891838
IPKSAVGTL	9	Unmodified	_IPKSAVGTL_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.2738952636719	2	443.273835	884.533118	0.14043	6.2247E-05	-0.071527	-3.1706E-05	0.068898	3.0541E-05	443.2736845297119	35.543	0.82187	35.625	35.268	36.09	0.082359					70	29	3	0	0	0	0.0054984	2	7093	7093;7144		86.332	13.364	1	2221600			15335	4903	8673	8674	19343;19344	19343					0.08623259419891838
IPKSAVGTL	9	Unmodified	_IPKSAVGTL_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.2738952636719	2	443.273835	884.533118	-0.085178	-3.7757E-05	0.16146	7.1572E-05	0.076283	3.3814E-05	443.2737918358069	35.475	0.79602	35.561	35.263	36.059	0.08625					66	28	3	0	0	0	0.0037449	1	7099	7099		96.367	21.944	1	2337900			15336	4903	8673	8674	19345	19345					0.08623259419891838
IPKSETTITS	10	Unmodified	_IPKSETTITS_					0	0	0		ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7869262695312	2	538.795329	1075.5761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.743	1	83.82	83.32	84.32	0.077095								0	0	0	0.35788	1	21914	21914		11.495	0.67078	1				15337	4641	8674	8675	19346	19346					0.041339846866549124
IPKSKFLAL	9	Unmodified	_IPKSKFLAL_					0	0	0		nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-7|EPB41	nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.82879638671875	2	508.828778	1015.643	0.42944	0.00021851	0.04572	2.3264E-05	0.47516	0.00024177	508.828694529005	45.069	0.91808	45.069	44.802	45.72	0					85	33	4	0	0	0	0.0073667	1	10036	10036		86.332	34.063	1	1814200			15338	12784	8675	8676	19347	19347					0.13580684759062933
IPKSKFLAL	9	Unmodified	_IPKSKFLAL_					0	0	0		nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-7|EPB41	nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8288269042969	2	508.828778	1015.643	0.36489	0.00018567	-0.12383	-6.3008E-05	0.24106	0.00012266	508.82863575590795	44.921	0.97414	44.99	44.682	45.656	0.068569					84	34	4	0	0	0	0.018737	1	9973	9973		86.332	34.063	1	2248900			15339	12784	8675	8676	19348	19348					0.13580684759062933
IPKSKFLAL	9	Unmodified	_IPKSKFLAL_					0	0	0		nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-7|EPB41	nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.253662109375	2	508.828778	1015.643	0.43447	0.00022107	-0.079388	-4.0395E-05	0.35508	0.00018068	508.82864903238936	44.955	0.8003	45.03	44.697	45.497	0.07505					81	29	4	0	0	0	0.18479	1	9939	9939		34.932	21.89	1	2130100			15340	12784	8675	8676	19349	19349					0.13580684759062933
IPKSPRSPK	9	Unmodified	_IPKSPRSPK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.8211975097656	2	505.311284	1008.60801	0.081946	4.1408E-05	-0.96406	-0.00048715	-0.88211	-0.00044574	505.31090990868296	29.736	0.4358	29.749	29.507	29.943	0.013474					25	14	2	0	0	0	0.25323	1	5296	5296		10.074	2.1638	1	141580	+		15341	16705;23038	8676	8677	19350	19350					0.10405441951127159
IPKSRDSL	8	Unmodified	_IPKSRDSL_					0	0	0		nc|ENSG00000166478|P52747-3|ZNF143	nc|ENSG00000166478|P52747-3|ZNF143	nc|ENSG00000166478|P52747-3|ZNF143	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2789001464844	2	458.266542	914.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.619	1	39.718	39.218	40.218	0.099407								0	0	0	0.33625	1	8367	8367		20.871	0.41758	1				15342	12818	8677	8678	19351	19351					0.05785187271760606
IPKVWLLVM	9	Unmodified	_IPKVWLLVM_					0	0	0			REV__nc|ENSG00000164180|Q8NDZ6-2|TMEM161B	REV__nc|ENSG00000164180|Q8NDZ6-2|TMEM161B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7643432617188	2	549.840831	1097.66711	0.27866	0.00015322	-0.33959	-0.00018672	-0.060929	-3.3501E-05	549.8406175201619	18.41	0.61339	18.292	18.065	18.678	-0.11739					43	20	3	0	0	0	0.25879	1	1944	1944		4.756	0.42677	1	126420	+		15343	17134	8678	8679	19352	19352					0.1221820192110954
IPLAWGEAL	9	Unmodified	_IPLAWGEAL_					0	0	0			REV__ENSG00000160218|ENST00000291574|TRAPPC10	REV__ENSG00000160218|ENST00000291574|TRAPPC10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.273835	968.533118	0.21599	0.00010481	0.26929	0.00013068	0.48528	0.00023549	485.2739612306273	81.686	0.87944	81.686	81.23	82.11	0					48	36	2	0	0	0	0.18943	1	21331	21331		30.225	3.8835	1	136940	+		15344	16890	8679	8680	19353	19353					0.04759259419893169
IPLAYRLIS	9	Unmodified	_IPLAYRLIS_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.32421875	2	523.32386	1044.63317	0.45781	0.00023958	0.35887	0.00018781	0.81668	0.00042739	523.3238640238037	70.516	0.83552	70.576	70.181	71.017	0.060783					69	29	3	0	0	0	0.008707	1	17875	17875		88.954	1.6957	1	889920	+		15345	19084	8680	8681	19354	19354					0.1126349675369056
IPLAYRLIS	9	Unmodified	_IPLAYRLIS_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3239135742188	2	523.32386	1044.63317	0.52961	0.00027716	0.25188	0.00013181	0.78149	0.00040897	523.3238995140204	70.623	0.91788	70.598	70.185	71.103	-0.024872					68	32	3	0	0	0	0.004681	1	17911	17911		88.954	1.6957	1	701880	+		15346	19084	8680	8681	19355	19355					0.1126349675369056
IPLDHGTLLI	10	Unmodified	_IPLDHGTLLI_					0	0	0		ENSG00000166199|ENST00000302708|ALKBH3;ENST00000532962.5_1_11:43918877-43941557:+|nuORF	ENSG00000166199|ENST00000302708|ALKBH3	ENSG00000166199|ENST00000302708|ALKBH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.834716796875	2	546.326599	1090.63865	0.60572	0.00033092	0.21669	0.00011838	0.82241	0.0004493	546.3261915751428	64.639	2.337	64.629	64.152	66.489	-0.0095367					144	85	3	0	0	0	0.24708	1	16078	16078		22.736	0	1	480940			15347	6043	8681	8682	19356	19356					0.09695175545539314
IPLERNILF	9	Unmodified	_IPLERNILF_					0	0	0		ENST00000480655.5_1_20:34262894-34263203:-|nuORF	ENST00000480655.5_1_20:34262894-34263203:-|nuORF	ENST00000480655.5_1_20:34262894-34263203:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.272216796875	2	557.834591	1113.65463	0.81179	0.00045284	-3.9184	-0.0021858	-3.1066	-0.001733	557.831636623488	50.677	0.26603	50.698	50.552	50.818	0.020691					11	9	2	0	0	0	0.24311	1	11764	11764		3.9444	2.1002	1	145010			15348	11012	8682	8683	19357	19357					0.1023488178241223
IPLFQQPLV	9	Unmodified	_IPLFQQPLV_					0	0	0		ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.8184204101562	2	527.81841	1053.62227	0.57187	0.00030185	-0.51378	-0.00027118	0.058091	3.0662E-05	527.818117227026	79.571	0.64287	79.571	79.23	79.872	0					39	24	2	0	0	0	0.17787	2	20619	20619;20672		26.884	5.137	1	289180			15349	816	8683	8684	19358;19359	19358					0.09760094379407747
IPLFQQPLV	9	Unmodified	_IPLFQQPLV_					0	0	0		ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.8185424804688	2	527.81841	1053.62227	0.51194	0.00027021	-0.53131	-0.00028044	-0.019371	-1.0224E-05	527.8181374821604	79.534	0.63351	79.596	79.314	79.947	0.061417					43	24	2	0	0	0	0.17787	1	20620	20620		26.884	0	1	295340			15350	816	8683	8684	19360	19360					0.09760094379407747
IPLFQQPLV	9	Unmodified	_IPLFQQPLV_					0	0	0		ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.818359375	2	527.81841	1053.62227	0.61078	0.00032238	-0.65292	-0.00034462	-0.042138	-2.2241E-05	527.818059784367	79.638	0.64264	79.609	79.305	79.947	-0.028923					43	24	2	0	0	0	0.1669	2	20675	20619;20675		28.487	5.3384	1	281520			15351	816	8683	8684	19361;19362	19362					0.09760094379407747
IPLFQQPLV	9	Unmodified	_IPLFQQPLV_					0	0	0		ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	527.81841	1053.62227	0.56453	0.00029797	-3.5067	-0.0018509	-2.9421	-0.0015529	528.3169972615734	79.194	0.098007	79.255	79.216	79.314	0.061409	-0.15783	-0.0031485	NaN	26.884	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38553			15352	816	8683	8684							0.09760094379407747
IPLHKFTSI	9	Unmodified	_IPLHKFTSI_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7716674804688	2	528.316035	1054.61752	0.33858	0.00017888	-2.08	-0.0010989	-1.7415	-0.00092005	528.315771265702	42.451	0.79888	42.536	42.063	42.861	0.085197					70	28	4	0	0	0	0.059987	1	9234	9234		70.332	24.311	1	669730			15353	2812	8684	8685	19363	19363					0.09239210236660256
IPLHKFTSI	9	Unmodified	_IPLHKFTSI_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7715454101562	2	528.316035	1054.61752	0.46626	0.00024633	-2.9236	-0.0015446	-2.4573	-0.0012982	528.3156668456254	42.394	1.0055	42.485	42.037	43.043	0.091362					78	35	3	0	0	0	0.082647	1	9193	9193		61.602	15.581	1	465080			15354	2812	8684	8685	19364	19364					0.09239210236660256
IPLLGKSSL	9	Unmodified	_IPLLGKSSL_					0	0	0		ENSG00000159147|ENST00000303071|DONSON	ENSG00000159147|ENST00000303071|DONSON	ENSG00000159147|ENST00000303071|DONSON	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.2550048828125	2	464.29731	926.580068	0.1293	6.0035E-05	0.055156	2.5609E-05	0.18446	8.5644E-05	464.297355714488	53.434	0.51775	53.434	53.259	53.776	0					25	19	2	0	0	0	0.15943	1	12615	12615		32.786	12.332	1	367760			15355	5389	8685	8686	19365	19365					0.1138411897103424
IPLLGKSSL	9	Unmodified	_IPLLGKSSL_					0	0	0		ENSG00000159147|ENST00000303071|DONSON	ENSG00000159147|ENST00000303071|DONSON	ENSG00000159147|ENST00000303071|DONSON	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	464.29731	926.580068	0.2799	0.00012996	-0.13265	-6.159E-05	0.14725	6.8366E-05	464.2971900267779	53.487	0.46614	53.477	53.305	53.771	-0.0096054	0.021858	-4.0101E-05	NaN	32.786	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264660			15356	5389	8685	8686							0.1138411897103424
IPLLRPLPCQ	10	Unmodified	_IPLLRPLPCQ_					0	0	0		ENST00000391770.8_1_19:54371192-54376790:+|nuORF	ENST00000391770.8_1_19:54371192-54376790:+|nuORF	ENST00000391770.8_1_19:54371192-54376790:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3458862304688	2	575.344269	1148.67399	0.36616	0.00021067	1.5097	0.00086857	1.8758	0.0010792	575.3454640549686	88.497	1.7325	88.497	87.398	89.131	0					189	84	4	0	0	0	0.40992	1	23544	23544		1.6526	0.17072	1	1263200			15357	10025	8686	8687	19366	19366					0.10559514801661862
IPLLSSVNV	9	Unmodified	_IPLLSSVNV_					0	0	0		nc|ENSG00000065413|Q8N8A2-5|ANKRD44;ANKRD44|p.F404Ifs*14|1|0.34|ENSG00000065413|chr2:197088748-197088749|-/T|frameshift_variant;nc|ENSG00000065413|Q8N8A2-3|ANKRD44;nc|ENSG00000065413|Q8N8A2-4|ANKRD44;ENSG00000065413|ENST00000282272|ANKRD44;nc|ENSG00000065413|Q8N8A2-2|ANKRD44	nc|ENSG00000065413|Q8N8A2-5|ANKRD44	nc|ENSG00000065413|Q8N8A2-5|ANKRD44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2865905761719	2	471.286943	940.559333	0.057448	2.7074E-05	-0.19014	-8.9608E-05	-0.13269	-6.2534E-05	471.2868042853429	73.178	0.67193	73.178	72.855	73.527	0					41	23	2	0	0	0	0.041175	1	18689	18689		56.177	30.778	1	260920			15358	45	8687	8688	19367	19367					0.0866752859137705
IPLLSSVNV	9	Unmodified	_IPLLSSVNV_					0	0	0		nc|ENSG00000065413|Q8N8A2-5|ANKRD44;ANKRD44|p.F404Ifs*14|1|0.34|ENSG00000065413|chr2:197088748-197088749|-/T|frameshift_variant;nc|ENSG00000065413|Q8N8A2-3|ANKRD44;nc|ENSG00000065413|Q8N8A2-4|ANKRD44;ENSG00000065413|ENST00000282272|ANKRD44;nc|ENSG00000065413|Q8N8A2-2|ANKRD44	nc|ENSG00000065413|Q8N8A2-5|ANKRD44	nc|ENSG00000065413|Q8N8A2-5|ANKRD44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2871398925781	2	471.286943	940.559333	0.063043	2.9711E-05	-0.30481	-0.00014365	-0.24177	-0.00011394	471.28675120972355	73.18	0.57226	73.234	72.924	73.496	0.053833					37	20	2	0	0	0	0.03069	1	18658	18658		60.074	30.992	1	198920			15359	45	8687	8688	19368	19368					0.0866752859137705
IPLLSSVNV	9	Unmodified	_IPLLSSVNV_					0	0	0		nc|ENSG00000065413|Q8N8A2-5|ANKRD44;ANKRD44|p.F404Ifs*14|1|0.34|ENSG00000065413|chr2:197088748-197088749|-/T|frameshift_variant;nc|ENSG00000065413|Q8N8A2-3|ANKRD44;nc|ENSG00000065413|Q8N8A2-4|ANKRD44;ENSG00000065413|ENST00000282272|ANKRD44;nc|ENSG00000065413|Q8N8A2-2|ANKRD44	nc|ENSG00000065413|Q8N8A2-5|ANKRD44	nc|ENSG00000065413|Q8N8A2-5|ANKRD44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2867431640625	2	471.286943	940.559333	0.30683	0.00014461	-0.38229	-0.00018017	-0.075461	-3.5564E-05	471.28649446359486	73.242	0.60207	73.213	72.927	73.529	-0.029305					42	21	3	0	0	0	0.088443	1	18689	18689		39.95	20.693	1	190170			15360	45	8687	8688	19369	19369					0.0866752859137705
IPLLVQGV	8	Unmodified	_IPLLVQGV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.77337646484375	2	419.773471	837.53239	-0.022806	-9.5732E-06	0.025652	1.0768E-05	0.0028467	1.195E-06	419.773433185157	70.802	0.55856	70.802	70.54	71.098	0					46	19	3	0	0	0	0.065483	2	17952	17952;18004		70.865	25.115	1	689450			15361	4024	8688	8689	19370;19371	19370					0.10712464770847419
IPLLVQGV	8	Unmodified	_IPLLVQGV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.7733459472656	2	419.773471	837.53239	0.09587	4.0244E-05	-0.21351	-8.9626E-05	-0.11764	-4.9383E-05	419.773322772168	70.748	0.54597	70.808	70.546	71.092	0.060783					44	19	3	0	0	0	0.065483	2	17921	17921;17970		70.865	25.115	1	645350			15362	4024	8688	8689	19372;19373	19372					0.10712464770847419
IPLLVQGV	8	Unmodified	_IPLLVQGV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.7734069824219	2	419.773471	837.53239	0.18464	7.7505E-05	-0.17512	-7.3512E-05	0.0095134	3.9935E-06	419.7733131806263	70.819	0.60946	70.795	70.521	71.13	-0.024872					46	21	3	0	0	0	0.049524	2	17980	17934;17980		78.445	22.396	1	691710			15363	4024	8688	8689	19374;19375	19375					0.10712464770847419
IPLNLPMAF	9	Unmodified	_IPLNLPMAF_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.8134765625	2	508.285889	1014.55722	0.39159	0.00019904	-0.42588	-0.00021647	-0.034297	-1.7433E-05	508.285466478973	58.413	0.99615	58.413	57.743	58.739	0					57	34	2	0	0	0	0.23783	1	14123	14123		12.532	12.532	1	324000			15364	4756	8689	8690	19376	19376					0.05052776581908347
IPLPAHGRPLR	11	Unmodified	_IPLPAHGRPLR_					0	0	0			REV__ENST00000598497.1_1_19:58598201-58598612:-|nuORF	REV__ENST00000598497.1_1_19:58598201-58598612:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5875549316406	3	409.58753	1225.74076	-1.1623	-0.00047608	0.27908	0.00011431	-0.88326	-0.00036177	409.587654724892	34.591	0.9124	34.666	34.158	35.071	0.075306					87	32	4	0	0	0	0.45202	1	6788	6788		4.4062	4.4062	1	727980	+		15365	22619	8690	8691	19377	19377					0.13691886407764287
IPLPLAVL	8	Unmodified	_IPLPLAVL_					0	0	0		TAPT1|p.I414M|1|0.27|ENSG00000169762|chr4:16170724-16170724|G/C|missense_variant;nc|ENSG00000169762|Q6NXT6-2|TAPT1;ENSG00000169762|ENST00000405303|TAPT1;ENST00000508886.1_1_4:16168395-16175964:-|nuORF	TAPT1|p.I414M|1|0.27|ENSG00000169762|chr4:16170724-16170724|G/C|missense_variant	TAPT1|p.I414M|1|0.27|ENSG00000169762|chr4:16170724-16170724|G/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.28619384765625	2	418.286214	834.557876	0.14088	5.8928E-05	0.23421	9.7968E-05	0.37509	0.0001569	418.28620910663386	86.768	1.6253	86.768	86.125	87.75	0					152	68	4	0	0	0	0.1467	1	22862	22862		52.334	0	1	2646100			15366	6385	8691	8692	19378	19378					0.13397939293281524
IPLPLGTVTI	10	Unmodified	_IPLPLGTVTI_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.3156127929688	2	512.326068	1022.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.305	1	85.305	84.805	85.805	0								0	0	0	0.32028	1	22400	22400		25.399	2.9467	1				15367	5675	8692	8693	19379	19379					0.12716961176636232
IPLPLGTVTI	10	Unmodified	_IPLPLGTVTI_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.315673828125	2	512.326068	1022.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.617	1	85.617	85.117	86.117	0								0	0	0	0.27706	1	22496	22496		30.637	11.38	1				15368	5675	8692	8693	19380	19380					0.12716961176636232
IPLPLGTVTI	10	Unmodified	_IPLPLGTVTI_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.3154907226562	2	512.326068	1022.63758	0.42678	0.00021865	-0.36735	-0.0001882	0.059429	3.0447E-05	512.3257974304635	85.322	0.78678	85.402	85.229	86.016	0.080887					35	29	2	0	0	0	0.2593	1	22379	22379		25.399	8.457	1	111360			15369	5675	8692	8693	19381	19381					0.12716961176636232
IPLPLGTVTI	10	Unmodified	_IPLPLGTVTI_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.3259887695312	2	512.326068	1022.63758	0.43946	0.00022515	-0.31825	-0.00016305	0.12122	6.2103E-05	512.3258287926096	84.523	0.75414	84.51	84.207	84.961	-0.01284					109	30	5	0	0	0	7.0725E-09	5	22141	22094;22141;22183;22233;22264		171.47	86.11	1	5336600			15370	5675	8692	8693	19382;19383;19384;19385;19386	19383					0.12716961176636232
IPLPLGTVTI	10	Unmodified	_IPLPLGTVTI_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.3156127929688	2	512.326068	1022.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.364	1	85.351	84.851	85.851	-0.01284								0	0	0	0.32814	1	22406	22406		24.021	7.0783	1				15371	5675	8692	8693	19387	19387					0.12716961176636232
IPLPLGTVTI	10	Unmodified	_IPLPLGTVTI_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.3157958984375	2	512.326068	1022.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.527	1	85.517	85.017	86.017	-0.0099792								0	0	0	0.32814	1	22456	22456		24.021	1.5679	1				15372	5675	8692	8693	19388	19388					0.12716961176636232
IPLPLGTVTI	10	Unmodified	_IPLPLGTVTI_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	512.326068	1022.63758	0.55741	0.00028557	-0.44277	-0.00022684	0.11464	5.8732E-05	512.3257853863436	84.517	0.74054	84.517	84.205	84.946	0	0.0034518	-2.5988E-05	NaN	171.47	94	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5946300			15373	5675	8692	8693							0.12716961176636232
IPLPLGTVTI	10	Unmodified	_IPLPLGTVTI_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENST00000472488.5_1_1:160085570-160106822:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	512.326068	1022.63758	0.49151	0.00025181	-0.47149	-0.00024156	0.020018	1.0256E-05	512.3257765235347	84.437	0.77056	84.514	84.201	84.971	0.077095	0.00051332	-5.5421E-05	NaN	171.47	107	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5434300			15374	5675	8692	8693							0.12716961176636232
IPLPTPPII	9	Unmodified	_IPLPTPPII_					0	0	0		nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	nc|ENSG00000104413|Q6NXG1-2|ESRP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.79742431640625	2	480.810054	959.605554	0.20928	0.00010063	-0.014237	-6.8452E-06	0.19505	9.3781E-05	480.80992049255394	58.107	0.55998	58.107	57.88	58.439	0					41	19	3	0	0	0	0.18943	1	14019	14019		30.225	5.5509	1	389160			15375	1889	8693	8694	19389	19389					0.12413593493465669
IPLQAYAKEYR	11	Unmodified	_IPLQAYAKEYR_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7704772949219	3	451.250472	1350.72959	0.44981	0.00020298	0.21536	9.7183E-05	0.66517	0.00030016	451.2506384537157	47.832	0.60928	47.832	47.468	48.077	0					39	21	3	0	0	0	0.33094	1	10946	10946		7.4771	3.0709	1	1447900			15376	2585	8694	8695	19390	19390					0.06825019522966613
IPLQLVTV	8	Unmodified	_IPLQLVTV_					0	0	0		nc|ENSG00000172845|Q02447-6|SP3;ENSG00000172845|ENST00000310015|SP3;nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-2|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;ENST00000465379.1_1_2:174774671-174778005:-|nuORF	nc|ENSG00000172845|Q02447-6|SP3	nc|ENSG00000172845|Q02447-6|SP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.78662109375	2	441.786579	881.558604	-0.083498	-3.6888E-05	0.066746	2.9488E-05	-0.016752	-7.4009E-06	441.78654296002884	73.727	0.71712	73.727	73.281	73.998	0					52	25	3	0	0	0	0.20518	2	18841	18841;18889		42.095	9.9776	1	551050			15377	6667	8695	8696	19391;19392	19391					0.11308733942337312
IPLQLVTV	8	Unmodified	_IPLQLVTV_					0	0	0		nc|ENSG00000172845|Q02447-6|SP3;ENSG00000172845|ENST00000310015|SP3;nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-2|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;ENST00000465379.1_1_2:174774671-174778005:-|nuORF	nc|ENSG00000172845|Q02447-6|SP3	nc|ENSG00000172845|Q02447-6|SP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7864990234375	2	441.786579	881.558604	0.017624	7.7861E-06	0.068994	3.0481E-05	0.086618	3.8267E-05	441.78656360763136	73.667	0.86083	73.72	73.17	74.031	0.052368					45	30	2	0	0	0	0.27124	2	18875	18814;18875		34.102	5.3384	1	536930			15378	6667	8695	8696	19393;19394	19394					0.11308733942337312
IPLQLVTV	8	Unmodified	_IPLQLVTV_					0	0	0		nc|ENSG00000172845|Q02447-6|SP3;ENSG00000172845|ENST00000310015|SP3;nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-2|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;ENST00000465379.1_1_2:174774671-174778005:-|nuORF	nc|ENSG00000172845|Q02447-6|SP3	nc|ENSG00000172845|Q02447-6|SP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.78662109375	2	441.786579	881.558604	0.11632	5.1387E-05	0.074116	3.2743E-05	0.19043	8.4131E-05	441.7865636985844	73.815	0.98691	73.785	73.072	74.059	-0.030663					69	35	3	0	0	0	0.27124	2	18836	18836;18882		34.102	3.8776	1	653430			15379	6667	8695	8696	19395;19396	19395					0.11308733942337312
IPLQTLLK	8	Unmodified	_IPLQTLLK_					0	0	0		ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.21051025390625	2	463.307678	924.600803	0.066946	3.1016E-05	0.17439	8.0797E-05	0.24134	0.00011181	463.307700268659	58.256	0.22767	58.256	58.1	58.328	0					9	7	2	0	0	0	0.32886	1	14099	14099		21.747	0.20967	1	88678			15380	5065	8696	8697	19397	19397					0.13548709350709487
IPLRKGPLAPF	11	Unmodified	_IPLRKGPLAPF_					0	0	0		ENST00000479305.5_1_9:126200042-126224279:-|nuORF	ENST00000479305.5_1_9:126200042-126224279:-|nuORF	ENST00000479305.5_1_9:126200042-126224279:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.5653076171875	3	403.588648	1207.74411	-1.1227	-0.00045311	-3.6931	-0.0014905	-4.8158	-0.0019436	403.58719667951505	34.827	0.41679	34.904	34.837	35.254	0.077377					20	14	2	0	0	0	0.33202	1	6905	6905		2.8433	0.93691	1	297890			15381	10990	8697	8698	19398	19398					0.14855136461778784
IPLRVLVV	8	Unmodified	_IPLRVLVV_					0	0	0		ENSG00000205808|ENST00000381883|PLPP6	ENSG00000205808|ENST00000381883|PLPP6	ENSG00000205808|ENST00000381883|PLPP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.9045715332031	2	454.818213	907.621873	0.041335	1.88E-05	0.29539	0.00013435	0.33672	0.00015315	454.8182392268238	61.851	0.56407	61.851	61.623	62.187	0					34	20	2	0	0	0	0.3366	1	15294	15294		18.135	4.6271	1	261490			15382	8304	8698	8699	19399	19399					0.16436719450234705
IPLRVLVV	8	Unmodified	_IPLRVLVV_					0	0	0		ENSG00000205808|ENST00000381883|PLPP6	ENSG00000205808|ENST00000381883|PLPP6	ENSG00000205808|ENST00000381883|PLPP6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	454.818213	907.621873	-0.26104	-0.00011873	0.44171	0.0002009	0.18066	8.2169E-05	454.8183937781104	61.711	0.52337	61.808	61.566	62.089	0.096985	-0.011861	3.9383E-05	NaN	18.135	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298100			15383	8304	8698	8699							0.16436719450234705
IPLSEILRI	9	Unmodified	_IPLSEILRI_					0	0	0		nc|ENSG00000115825|O94806-2|PRKD3;ENST00000494667.5_1_2:37496701-37543667:-|nuORF;PRKD3|p.N811Tfs*8|1|0.05|ENSG00000115825|chr2:37254271-37254272|-/AATAAAAG|frameshift_variant;PRKD3|p.L812Sfs*13|1|0.05|ENSG00000115825|chr2:37254269-37254270|-/A|frameshift_variant;ENSG00000115825|ENST00000234179|PRKD3	nc|ENSG00000115825|O94806-2|PRKD3	nc|ENSG00000115825|O94806-2|PRKD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3370971679688	2	527.336967	1052.65938	0.8751	0.00046147	-0.31011	-0.00016353	0.56499	0.00029794	527.3367129530847	74.693	0.80448	74.693	74.374	75.178	0					43	28	2	0	0	0	0.013404	1	19161	19161		74.2	26.605	1	718380			15384	2678	8699	8700	19400	19400					0.13515765925171763
IPLSEILRI	9	Unmodified	_IPLSEILRI_					0	0	0		nc|ENSG00000115825|O94806-2|PRKD3;ENST00000494667.5_1_2:37496701-37543667:-|nuORF;PRKD3|p.N811Tfs*8|1|0.05|ENSG00000115825|chr2:37254271-37254272|-/AATAAAAG|frameshift_variant;PRKD3|p.L812Sfs*13|1|0.05|ENSG00000115825|chr2:37254269-37254270|-/A|frameshift_variant;ENSG00000115825|ENST00000234179|PRKD3	nc|ENSG00000115825|O94806-2|PRKD3	nc|ENSG00000115825|O94806-2|PRKD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3372802734375	2	527.336967	1052.65938	0.43032	0.00022692	0.32805	0.00017299	0.75837	0.00039992	527.3370330426945	74.649	0.81294	74.701	74.405	75.218	0.052368					52	28	3	0	0	0	0.01909	1	19141	19141		65.474	25.234	1	650450			15385	2678	8699	8700	19401	19401					0.13515765925171763
IPLSEILRI	9	Unmodified	_IPLSEILRI_					0	0	0		nc|ENSG00000115825|O94806-2|PRKD3;ENST00000494667.5_1_2:37496701-37543667:-|nuORF;PRKD3|p.N811Tfs*8|1|0.05|ENSG00000115825|chr2:37254271-37254272|-/AATAAAAG|frameshift_variant;PRKD3|p.L812Sfs*13|1|0.05|ENSG00000115825|chr2:37254269-37254270|-/A|frameshift_variant;ENSG00000115825|ENST00000234179|PRKD3	nc|ENSG00000115825|O94806-2|PRKD3	nc|ENSG00000115825|O94806-2|PRKD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.337158203125	2	527.336967	1052.65938	0.73221	0.00038612	-0.05589	-2.9473E-05	0.67632	0.00035665	527.3368754729781	74.708	0.6449	74.676	74.387	75.031	-0.031479					37	22	2	0	0	0	0.01909	1	19168	19168		65.474	25.234	1	563050			15386	2678	8699	8700	19402	19402					0.13515765925171763
IPLSEILTV	9	Unmodified	_IPLSEILTV_					0	0	0		ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8024597167969	2	492.802426	983.590298	0.42899	0.0002114	-0.58847	-0.00029	-0.15948	-7.8595E-05	492.80201042442883	82.538	1.2427	82.611	82.215	83.458	0.073097					117	48	4	0	0	0	0.0017972	2	21534	21534;21585		112.59	10.479	1	1882100			15387	1962	8700	8701	19403;19404	19403					0.09784681905614434
IPLSEILTV	9	Unmodified	_IPLSEILTV_					0	0	0		ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8023681640625	2	492.802426	983.590298	0.47476	0.00023396	-0.61166	-0.00030143	-0.13689	-6.746E-05	492.8019971505614	82.663	1.4168	82.643	82.278	83.695	-0.020584					120	57	4	0	0	0	0.0014051	3	21567	21518;21567;21613		117.6	11.209	1	1876700			15388	1962	8700	8701	19405;19406;19407	19406					0.09784681905614434
IPLSEILTV	9	Unmodified	_IPLSEILTV_					0	0	0		ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	ENST00000597589.5_1_19:47177782-47200527:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	492.802426	983.590298	0.52655	0.00025949	-0.77897	-0.00038388	-0.25242	-0.00012439	492.8019674408378	82.604	1.2708	82.604	82.287	83.558	0	-0.015268	-0.00011114	NaN	117.6	121	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1910100			15389	1962	8700	8701							0.09784681905614434
IPLSHELV	8	Unmodified	_IPLSHELV_					0	0	0			REV__ENSG00000062822|ENST00000440232|POLD1	REV__ENSG00000062822|ENST00000440232|POLD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2668762207031	2	454.26601	906.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.191	1	87.191	86.691	87.691	0								0	0	0	0.32762	1	22980	22980		24.674	5.2349	1		+		15390	13636	8701	8702	19408	19408					0.06046972902845482
IPLVSVPLLM	10	Unmodified	_IPLVSVPLLM_					0	0	0		ENST00000354179.8_2_5:176637270-176637354:+|nuORF	ENST00000354179.8_2_5:176637270-176637354:+|nuORF	ENST00000354179.8_2_5:176637270-176637354:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7731323242188	2	541.338121	1080.66169	0.65987	0.00035721	-0.11493	-6.2217E-05	0.54494	0.000295	541.3378836631625	86.544	0.89565	86.544	86.013	86.909	0					73	34	3	0	0	0	0.3198	1	22807	22807		4.3292	4.3292	1	252020			15391	9589	8702	8703	19409	19409					0.12458478338635359
IPLVTILI	8	Unmodified	_IPLVTILI_					0	0	0		ENSG00000140030|ENST00000267549|GPR65	ENSG00000140030|ENST00000267549|GPR65	ENSG00000140030|ENST00000267549|GPR65	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.3070068359375	2	441.307147	880.599741	0.047662	2.1033E-05	0.032126	1.4177E-05	0.079788	3.5211E-05	441.30702962537873	93.939	0.97607	94.025	93.682	94.658	0.08667					163	79	3	0	0	0	0.065483	1	25028	25028		70.865	11.069	1	843530			15392	4278	8703	8704	19410	19410					0.15466494981819778
IPLVTILI	8	Unmodified	_IPLVTILI_					0	0	0		ENSG00000140030|ENST00000267549|GPR65	ENSG00000140030|ENST00000267549|GPR65	ENSG00000140030|ENST00000267549|GPR65	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	441.307147	880.599741	0.28281	0.00012481	-0.21049	-9.2891E-05	0.072321	3.1916E-05	441.3069299465608	94.054	0.87537	94.053	93.676	94.551	-0.00051117	0.006344	-0.0001268	NaN	70.865	142	65	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	654460			15393	4278	8703	8704							0.15466494981819778
IPMGKSMLV	9	2 Oxidation (M)	_IPM(Oxidation (M))GKSM(Oxidation (M))LV_		IPM(1)GKSM(1)LV		IPM(68)GKSM(68)LV	0	0	2		ENSG00000167244|ENST00000416167|IGF2;nc|ENSG00000167244|P01344-2|IGF2;nc|ENSG00000167244|P01344-3|IGF2	ENSG00000167244|ENST00000416167|IGF2	ENSG00000167244|ENST00000416167|IGF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2672119140625	2	504.266838	1006.51912	0.30011	0.00015134	0.24419	0.00012314	0.54431	0.00027448	504.26686486265555	31.907	1.837	31.907	31.202	33.039	0					137	65	3	0	0	0	0.017549	5	5906	5861;5906;5953;6001;6047		67.838	35.533	1	2447800			15394	6161	8704	8705	19411;19412;19413;19414;19415	19412		722;723			0.01612522604955302
IPMGKSMLV	9	2 Oxidation (M)	_IPM(Oxidation (M))GKSM(Oxidation (M))LV_		IPM(1)GKSM(1)LV		IPM(64)GKSM(64)LV	0	0	2		ENSG00000167244|ENST00000416167|IGF2;nc|ENSG00000167244|P01344-2|IGF2;nc|ENSG00000167244|P01344-3|IGF2	ENSG00000167244|ENST00000416167|IGF2	ENSG00000167244|ENST00000416167|IGF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2673034667969	2	504.266838	1006.51912	0.29607	0.0001493	0.14831	7.4789E-05	0.44439	0.00022409	504.26684461193184	31.794	1.6706	31.836	31.13	32.801	0.042364					128	59	3	0	0	0	0.020233	4	5891	5891;5944;5995;6039		63.961	33.736	1	3163200			15395	6161	8704	8705	19416;19417;19418;19419	19416		722;723			0.01612522604955302
IPMGKSMLV	9	2 Oxidation (M)	_IPM(Oxidation (M))GKSM(Oxidation (M))LV_		IPM(1)GKSM(1)LV		IPM(73)GKSM(73)LV	0	0	2		ENSG00000167244|ENST00000416167|IGF2;nc|ENSG00000167244|P01344-2|IGF2;nc|ENSG00000167244|P01344-3|IGF2	ENSG00000167244|ENST00000416167|IGF2	ENSG00000167244|ENST00000416167|IGF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.26715087890625	2	504.266838	1006.51912	0.33314	0.00016799	0.11951	6.0264E-05	0.45264	0.00022825	504.26680474755403	31.842	2.0351	31.883	30.907	32.942	0.040989					157	73	3	0	0	0	0.014206	4	5877	5877;5930;5977;6030		72.968	42.331	1	2989500			15396	6161	8704	8705	19420;19421;19422;19423	19420		722;723			0.01612522604955302
IPMKLIVSS	9	Unmodified	_IPMKLIVSS_					0	0	0			REV__ENSG00000129315|ENST00000261900|CCNT1	REV__ENSG00000129315|ENST00000261900|CCNT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7825012207031	2	494.298996	986.583439	0.3902	0.00019288	-0.099307	-4.9087E-05	0.2909	0.00014379	494.2989213473156	32.324	0.63706	32.379	32.02	32.658	0.054371					37	22	2	0	0	0	0.2322	1	6079	6079		14.838	1.7958	1	215390	+		15397	15410	8705	8706	19424	19424					0.08961045753403596
IPMKLIVSS	9	Unmodified	_IPMKLIVSS_					0	0	0			REV__ENSG00000129315|ENST00000261900|CCNT1	REV__ENSG00000129315|ENST00000261900|CCNT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	494.298996	986.583439	0.65952	0.000326	-0.73996	-0.00036576	-0.080435	-3.9759E-05	494.29863183453404	32.394	0.56908	32.394	32.064	32.633	0	0.037661	-0.00025945	NaN	14.838	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119480	+		15398	15410	8705	8706							0.08961045753403596
IPMKLIVSS	9	Unmodified	_IPMKLIVSS_					0	0	0			REV__ENSG00000129315|ENST00000261900|CCNT1	REV__ENSG00000129315|ENST00000261900|CCNT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	494.298996	986.583439	0.71701	0.00035442	-0.50558	-0.00024991	0.21143	0.00010451	494.2987648273837	32.242	0.58245	32.297	32.007	32.59	0.055309	-0.059581	-2.774E-05	NaN	14.838	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189340	+		15399	15410	8705	8706							0.08961045753403596
IPMRLFMQ	8	Unmodified	_IPMRLFMQ_					0	0	0		ENSG00000164645|ENST00000297203|TEX47	ENSG00000164645|ENST00000297203|TEX47	ENSG00000164645|ENST00000297203|TEX47	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7876586914062	2	518.277541	1034.54053	0.48309	0.00025037	0.78734	0.00040806	1.2704	0.00065844	518.2781368807185	64.628	1.0033	64.628	64.37	65.373	0					38	36	2	0	0	0	0.33245	1	16156	16156		13.508	0	1	129340			15400	5859	8706	8707	19425	19425					0.024639524243184496
IPMTPTSSF	9	Oxidation (M)	_IPM(Oxidation (M))TPTSSF_		IPM(1)TPTSSF		IPM(110)TPTSSF	0	0	1		ENSG00000168264|ENST00000366609|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7391357421875	2	498.738968	995.463383	0.51149	0.0002551	0.091109	4.5439E-05	0.6026	0.00030054	498.73885179183475	49.234	0.8806	49.234	48.912	49.793	0					73	31	3	0	0	0	0.00207	2	11381	11329;11381		109.63	27.765	1	1100700			15401	6260	8707	8708	19426;19427	19427		738			-0.034529873110159315
IPMTPTSSF	9	Oxidation (M)	_IPM(Oxidation (M))TPTSSF_		IPM(1)TPTSSF		IPM(85)TPTSSF	0	0	1		ENSG00000168264|ENST00000366609|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7391052246094	2	498.738968	995.463383	0.34609	0.00017261	0.2343	0.00011686	0.58039	0.00028947	498.73895038456493	49.255	0.84124	49.3	48.935	49.776	0.044891					64	30	3	0	0	0	0.0061338	1	11346	11346		85.357	7.3724	1	1338000			15402	6260	8707	8708	19428	19428		738			-0.034529873110159315
IPMTPTSSF	9	Oxidation (M)	_IPM(Oxidation (M))TPTSSF_		IPM(1)TPTSSF		IPM(110)TPTSSF	0	0	1		ENSG00000168264|ENST00000366609|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.73919677734375	2	498.738968	995.463383	0.20781	0.00010364	0.72022	0.0003592	0.92803	0.00046284	498.7390098864953	49.173	0.98283	49.205	48.878	49.861	0.032043					90	35	4	0	0	0	0.00207	1	11312	11312		109.63	27.765	1	1252200			15403	6260	8707	8708	19429	19429		738			-0.034529873110159315
IPNARIEL	8	Unmodified	_IPNARIEL_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1;ENST00000397477.2_1_22:32667789-32668191:+|nuORF	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2768249511719	2	463.276909	924.539266	0.042671	1.9769E-05	0.64675	0.00029963	0.68942	0.00031939	463.27705056781394	47.041	0.67043	47.094	46.817	47.487	0.052574					40	24	2	0	0	0	0.28276	1	10657	10657		32.786	2.5609	1	515530			15404	964	8708	8709	19430	19430					0.07397777651419801
IPNARIEL	8	Unmodified	_IPNARIEL_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1;ENST00000397477.2_1_22:32667789-32668191:+|nuORF	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.277099609375	2	463.276909	924.539266	0.72405	0.00033543	-0.12583	-5.8293E-05	0.59822	0.00027714	463.2767308956679	46.977	0.66991	47.032	46.796	47.466	0.054371					46	23	3	0	0	0	0.23559	1	10657	10657		38.176	7.539	1	636070			15405	964	8708	8709	19431	19431					0.07397777651419801
IPNAWAKIT	9	Unmodified	_IPNAWAKIT_					0	0	0		nc|ENSG00000254838|Q7Z2Y8|GVINP1;ENST00000526769.3_1_11:6735844-6741409:-|nuORF	nc|ENSG00000254838|Q7Z2Y8|GVINP1	nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.80181884765625	2	507.292559	1012.57057	0.30666	0.00015557	0.22985	0.0001166	0.53651	0.00027217	507.2925731334804	38.278	0.9947	38.375	37.899	38.893	0.097527					69	35	3	0	0	0	0.2451	1	7846	7846		10.824	2.2306	1	498790			15406	12981	8709	8710	19432	19432					0.06478350685495116
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7716369628906	2	510.297842	1018.58113	1.038	0.00052968	-1.3915	-0.00071009	-0.35355	-0.00018041	510.2969743514181	56.063	0.53541	56.063	55.732	56.267	0					29	18	2	0	0	0	0.067563	1	13425	13425		66.457	35.188	1	1437500			15407	1493	8710	8711	19433	19433					0.07258333339939327
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7715759277344	2	510.297842	1018.58113	0.75909	0.00038736	-1.3135	-0.00067029	-0.55443	-0.00028292	510.29705721472226	55.991	0.57241	56.062	55.777	56.35	0.070885					34	20	2	0	0	0	0.067563	1	13392	13392		57.722	19.546	1	1646700			15408	1493	8710	8711	19434	19434					0.07258333339939327
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	ENSG00000099783|ENST00000325495|HNRNPM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.771484375	2	510.297842	1018.58113	0.78844	0.00040234	-0.47857	-0.00024421	0.30987	0.00015813	510.2975960986925	56.102	0.55413	56.083	55.798	56.352	-0.019081					41	19	3	0	0	0	0.067563	1	13443	13443		57.722	29.549	1	987260			15409	1493	8710	8711	19435	19435					0.07258333339939327
IPNERTMQL	9	Oxidation (M)	_IPNERTM(Oxidation (M))QL_		IPNERTM(1)QL		IPNERTM(76)QL	0	0	1		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52;ENST00000471309.1_1_6:33231312-33232261:-|nuORF	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2869873046875	2	559.287148	1116.55974	0.45604	0.00025506	-0.1923	-0.00010755	0.26375	0.00014751	559.2868954094531	29.788	1.0859	29.788	29.273	30.359	0					96	38	4	0	0	0	0.01251	3	5371	5273;5324;5371		75.571	41.169	1	606630			15410	8435	8711	8712	19436;19437;19438	19438		904			0.006125802489123089
IPNERTMQL	9	Oxidation (M)	_IPNERTM(Oxidation (M))QL_		IPNERTM(1)QL		IPNERTM(71)QL	0	0	1		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52;ENST00000471309.1_1_6:33231312-33232261:-|nuORF	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2870483398438	2	559.287148	1116.55974	0.38298	0.00021419	-0.10167	-5.6861E-05	0.28131	0.00015733	559.2869333138203	29.7	1.3463	29.713	29.19	30.537	0.012266					100	46	3	0	0	0	0.015535	4	5355	5260;5308;5355;5397		70.929	34.837	1	659490			15411	8435	8711	8712	19439;19440;19441;19442	19441		904			0.006125802489123089
IPNERTMQL	9	Oxidation (M)	_IPNERTM(Oxidation (M))QL_		IPNERTM(1)QL		IPNERTM(79)QL	0	0	1		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52;ENST00000471309.1_1_6:33231312-33232261:-|nuORF	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2872924804688	2	559.287148	1116.55974	0.027417	1.5334E-05	0.24692	0.0001381	0.27433	0.00015343	559.2871269330279	29.609	1.162	29.622	29.3	30.462	0.013475					89	39	3	0	0	0	0.0099976	4	5312	5267;5312;5358;5410		79.427	33.727	1	612340			15412	8435	8711	8712	19443;19444;19445;19446	19444		904			0.006125802489123089
IPNFKVSSI	9	Unmodified	_IPNFKVSSI_					0	0	0			REV__ENSG00000164934|ENST00000612750|DCAF13	REV__ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7931213378906	2	502.792392	1003.57023	0.31688	0.00015933	0.94057	0.00047291	1.2575	0.00063224	502.79290718110644	81.607	0.46066	81.607	81.434	81.894	0					32	18	2	0	0	0	0.1669	1	21267	21267		28.487	8.0332	1	335380	+		15413	17191	8712	8713	19447	19447					0.06858930965665877
IPNFKVSSI	9	Unmodified	_IPNFKVSSI_					0	0	0			REV__ENSG00000164934|ENST00000612750|DCAF13	REV__ENSG00000164934|ENST00000612750|DCAF13	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	502.792392	1003.57023	0.31688	0.00015933	0.94057	0.00047291	1.2575	0.00063224	502.79290718110644	81.607	0.46066	81.607	81.434	81.894	0	-0.0042891	-1.062E-05	NaN	28.487	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335380	+		15414	17191	8712	8713							0.06858930965665877
IPNFKVSSI	9	Unmodified	_IPNFKVSSI_					0	0	0			REV__ENSG00000164934|ENST00000612750|DCAF13	REV__ENSG00000164934|ENST00000612750|DCAF13	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	502.792392	1003.57023	0.054792	2.7549E-05	1.2017	0.00060418	1.2564	0.00063173	502.7930382434117	81.525	0.45655	81.594	81.417	81.874	0.068993	-0.01676	0.00025192	NaN	28.487	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336340	+		15415	17191	8712	8713							0.06858930965665877
IPNFKVSSI	9	Unmodified	_IPNFKVSSI_					0	0	0			REV__ENSG00000164934|ENST00000612750|DCAF13	REV__ENSG00000164934|ENST00000612750|DCAF13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	502.792392	1003.57023	0.3418	0.00017186	0.75878	0.00038151	1.1006	0.00055336	502.79288944101563	81.656	0.46532	81.632	81.44	81.906	-0.02404	0.021049	-0.00019343	NaN	28.487	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400390	+		15416	17191	8712	8713							0.06858930965665877
IPNFQILF	8	Unmodified	_IPNFQILF_					0	0	0		nc|ENSG00000100427|Q15049-2|MLC1;ENSG00000100427|ENST00000311597|MLC1	nc|ENSG00000100427|Q15049-2|MLC1	nc|ENSG00000100427|Q15049-2|MLC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7973937988281	2	496.284203	990.553853	0.43003	0.00021342	1.0043	0.00049841	1.4343	0.00071183	496.2849227185132	88.329	0.26656	88.326	88.224	88.491	-0.0028458					13	12	2	0	0	0	0.34092	1	23331	23331		13.508	0.97634	1	66293			15417	1596	8713	8714	19448	19448					0.0581984979957042
IPNIILTV	8	Unmodified	_IPNIILTV_					0	0	0		nc|ENSG00000105662|Q6UUV9-3|CRTC1;ENSG00000105662|ENST00000321949|CRTC1;nc|ENSG00000105662|Q6UUV9-2|CRTC1	nc|ENSG00000105662|Q6UUV9-3|CRTC1	nc|ENSG00000105662|Q6UUV9-3|CRTC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.78662109375	2	441.786579	881.558604	0.38997	0.00017228	-0.21946	-9.6956E-05	0.17051	7.5327E-05	441.78644098014917	78.41	1.031	78.468	78.058	79.089	0.058151					67	39	3	0	0	0	0.20518	1	20286	20286		42.095	3.9434	1	473900			15418	2004	8714	8715	19449	19449					0.11308733942314575
IPNKNRAEQL	10	Unmodified	_IPNKNRAEQL_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8226928710938	2	591.833111	1181.65167	0.68304	0.00040425	0.46626	0.00027595	1.1493	0.0006802	591.8334565955	21.024	0.51387	20.914	20.637	21.15	-0.11003					28	17	2	0	0	0	0.34483	1	2685	2685		13.615	4.8695	1	76427			15419	1866	8715	8716	19450	19450					0.06811006657608232
IPNKNRAEQL	10	Unmodified	_IPNKNRAEQL_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.8225708007812	2	591.833111	1181.65167	0.58445	0.0003459	0.86967	0.0005147	1.4541	0.0008606	591.8334526995062	20.801	0.59299	20.748	20.553	21.146	-0.052912					31	20	2	0	0	0	0.34483	1	2638	2638		13.615	4.8695	1	85602			15420	1866	8715	8716	19451	19451					0.06811006657608232
IPNNKGQLI	9	Unmodified	_IPNNKGQLI_					0	0	0		ENST00000493260.5_1_19:48981039-48982464:+|nuORF;ENSG00000105443|ENST00000452733|CYTH2;nc|ENSG00000105443|Q99418|CYTH2	ENST00000493260.5_1_19:48981039-48982464:+|nuORF	ENST00000493260.5_1_19:48981039-48982464:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8137512207031	2	498.795466	995.57638	0.5216	0.00026017	0.99869	0.00049814	1.5203	0.00075831	498.7961055797631	51.008	0.63148	51.055	50.848	51.479	0.046574					37	23	2	0	0	0	0.24581	1	11921	11921		16.942	2.104	1	570810			15421	1981	8716	8717	19452	19452					0.07841449197189831
IPNQGPAASF	10	Unmodified	_IPNQGPAASF_					0	0	0			REV__nc|ENSG00000145934|Q9NT68-2|TENM2	REV__nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8189697265625	2	501.256174	1000.49779	0.31189	0.00015634	1.5349	0.0007694	1.8468	0.00092574	501.2571275366026	43.677	0.43764	43.677	43.441	43.878	0					22	15	2	0	0	0	0.27979	1	9599	9599		16.149	10.417	1	102650	+		15422	16318	8717	8718	19453	19453					-0.0024340310790194053
IPNRIPKI	8	Unmodified	_IPNRIPKI_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97;nc|ENSG00000164323|Q9P2B7-2|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.81097412109375	2	475.810919	949.607286	0.31544	0.00015009	-0.18353	-8.7324E-05	0.13192	6.2767E-05	475.81075746447857	37.809	1.0674	37.9	37.197	38.264	0.090881					76	38	3	0	0	0	0.079438	2	7858	7810;7858		64.236	17.315	1	490070			15423	5830	8718	8719	19454;19455	19455					0.13046647302076053
IPNRIPKI	8	Unmodified	_IPNRIPKI_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97;nc|ENSG00000164323|Q9P2B7-2|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.8110046386719	2	475.810919	949.607286	0.22918	0.00010905	-0.021804	-1.0374E-05	0.20737	9.8671E-05	475.8108048553677	37.801	1.2869	37.899	37.091	38.378	0.097527					90	46	3	0	0	0	0.18275	2	7816	7740;7816		46.021	15.211	1	410710			15424	5830	8718	8719	19456;19457	19457					0.13046647302076053
IPNRIPKI	8	Unmodified	_IPNRIPKI_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97;nc|ENSG00000164323|Q9P2B7-2|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	475.810919	949.607286	0.291	0.00013846	0.020221	9.6212E-06	0.31122	0.00014808	475.8107994549806	37.943	1.0875	37.943	37.181	38.269	0	0.028825	8.4179E-05	NaN	64.236	54	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487860			15425	5830	8718	8719							0.13046647302076053
IPNTEVQYI	9	Unmodified	_IPNTEVQYI_					0	0	0			REV__ENSG00000147183|ENST00000276127|CPXCR1	REV__ENSG00000147183|ENST00000276127|CPXCR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7860107421875	2	538.784764	1075.55498	0.52706	0.00028397	0.63979	0.00034471	1.1668	0.00062868	538.7857271075144	86.071	0.91553	86.155	85.809	86.725	0.084251					70	35	3	0	0	0	0.28128	1	22682	22682		11.64	1.4569	1	165920	+		15426	16378	8719	8720	19458	19458					0.020220193778186513
IPNYQGPL	8	Unmodified	_IPNYQGPL_					0	0	0		ENST00000487700.1_1_1:46714192-46733228:+|nuORF;ENST00000463715.5_3_1:46714207-46726591:+|nuORF;RAD54L|p.P155Lfs*7|1|0.36|ENSG00000085999|chr1:46260597-46260597|C/-|frameshift_variant;ENSG00000085999|ENST00000371975|RAD54L	ENST00000487700.1_1_1:46714192-46733228:+|nuORF	ENST00000487700.1_1_1:46714192-46733228:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7700500488281	2	451.242535	900.470518	0.23655	0.00010674	-0.71228	-0.00032141	-0.47573	-0.00021467	451.24220022388994	50.027	0.64052	50.027	49.793	50.433	0					35	23	2	0	0	0	0.31375	1	11588	11588		19.439	4.8573	1	296720			15427	1272	8720	8721	19459	19459					0.016301133517231392
IPNYYKIIKK	10	Unmodified	_IPNYYKIIKK_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.902099609375	3	427.263941	1278.76999	0.11916	5.0911E-05	0.76978	0.0003289	0.88894	0.00037981	427.2641322468261	51.224	0.66872	51.224	50.896	51.565	0					37	24	2	0	0	0	0.32068	1	11959	11959		1.7423	0	1	233300			15428	7953	8721	8722	19460	19460					0.14175985913379918
IPNYYKIIKK	10	Unmodified	_IPNYYKIIKK_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.9017639160156	3	427.263941	1278.76999	-0.060168	-2.5708E-05	0.82659	0.00035317	0.76642	0.00032746	427.26408958119316	51.626	0.76909	51.673	51.429	52.198	0.046574					39	27	2	0	0	0	0.31942	1	12002	12002		1.7423	0	1	296540			15429	7953	8721	8722	19461	19461					0.14175985913379918
IPPDQQRLI	9	Unmodified	_IPPDQQRLI_					0	0	0		ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3145141601562	2	540.314023	1078.61349	0.61766	0.00033373	0.1423	7.6887E-05	0.75996	0.00041062	540.3140712059003	40.505	1.4956	40.505	39.886	41.382	0					105	54	2	0	0	0	0.058995	4	8725	8539;8680;8725;8777		49.554	14.622	1	3210100			15430	11224	8722	8723	19462;19463;19464;19465	19464					0.0773312074295518
IPPDQQRLI	9	Unmodified	_IPPDQQRLI_					0	0	0		ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3143920898438	2	540.314023	1078.61349	0.65706	0.00035502	0.11517	6.223E-05	0.77223	0.00041725	540.3140535771036	40.362	1.6013	40.454	39.83	41.431	0.09267					101	58	2	0	0	0	0.05341	2	8674	8674;8725		51.63	9.3173	1	3489600			15431	11224	8722	8723	19466;19467	19466					0.0773312074295518
IPPDQQRLI	9	Unmodified	_IPPDQQRLI_					0	0	0		ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.314453125	2	540.314023	1078.61349	0.64237	0.00034708	0.16368	8.8437E-05	0.80605	0.00043552	540.3140826911565	40.313	1.3635	40.412	39.817	41.18	0.099407					93	49	2	0	0	0	0.037019	3	8598	8598;8648;8700		57.722	15.409	1	3864300			15432	11224	8722	8723	19468;19469;19470	19468					0.0773312074295518
IPPEAKMYL	9	Unmodified	_IPPEAKMYL_					0	0	0			REV__nc|ENSG00000124920|Q9Y2G1-2|MYRF	REV__nc|ENSG00000124920|Q9Y2G1-2|MYRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3193359375	2	531.288628	1060.5627	0.71602	0.00038041	0.60522	0.00032154	1.3212	0.00070196	531.2891906706501	84.958	0.38493	84.958	84.871	85.256	0					18	14	2	0	0	0	0.2451	1	22273	22273		6.7232	2.7788	1	75438	+		15433	15253	8723	8724	19471	19471					0.03484455373745732
IPPELKTV	8	Unmodified	_IPPELKTV_					0	0	0		nc|ENSG00000152763|Q5VTH9-2|DNAI4;ENSG00000152763|ENST00000371026|DNAI4	nc|ENSG00000152763|Q5VTH9-2|DNAI4	nc|ENSG00000152763|Q5VTH9-2|DNAI4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.777587890625	2	448.776211	895.537869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.926	1	32.98	32.48	33.48	0.054371								0	0	0	0.36961	1	6324	6324		5.7604	0	1				15434	5038	8724	8725	19472	19472					0.08592143562680121
IPPEVQRI	8	Unmodified	_IPPEVQRI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.2857666015625	2	476.284734	950.554916	0.183	8.716E-05	0.84025	0.0004002	1.0233	0.00048736	476.2850211557773	38.885	2.1583	38.978	38.211	40.369	0.09267					166	77	4	0	0	0	0.11593	4	8208	8057;8104;8156;8208		57.722	19.748	1	3691600			15435	3320	8725	8726	19473;19474;19475;19476	19476					0.07766064168481535
IPPEVQRI	8	Unmodified	_IPPEVQRI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.284912109375	2	476.284734	950.554916	0.38142	0.00018167	0.54986	0.00026189	0.93129	0.00044356	476.28491179425987	38.795	2.2404	38.895	38.322	40.563	0.099407					179	80	4	0	0	0	0.088223	5	8122	8034;8080;8122;8169;8218		62.573	11.107	1	3472500			15436	3320	8725	8726	19477;19478;19479;19480;19481	19479					0.07766064168481535
IPPEVQRI	8	Unmodified	_IPPEVQRI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	476.284734	950.554916	-0.20136	-9.5903E-05	1.0439	0.00049719	0.84253	0.00040128	476.2851745044352	38.918	2.6731	38.918	38.149	40.822	0	-0.011934	0.00020509	NaN	62.573	200	96	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3321000			15437	3320	8725	8726							0.07766064168481535
IPPGSILL	8	Unmodified	_IPPGSILL_					0	0	0		nc|ENSG00000172995|Q9UBL0-4|ARPP21;nc|ENSG00000172995|Q9UBL0|ARPP21;nc|ENSG00000172995|Q9UBL0-3|ARPP21;ENSG00000172995|ENST00000684406|ARPP21	nc|ENSG00000172995|Q9UBL0-4|ARPP21	nc|ENSG00000172995|Q9UBL0-4|ARPP21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.25982666015625	2	405.260197	808.50584	-0.032613	-1.3217E-05	0.16198	6.5643E-05	0.12937	5.2427E-05	405.26013315893414	71.524	2.5373	71.524	70.797	73.335	0					206	91	3	0	0	0	0.040061	2	18081	18081;18230		82.939	0	1	2314400			15438	6685	8726	8727	19482;19483	19482					0.09392775879518922
IPPGSILL	8	Unmodified	_IPPGSILL_					0	0	0		nc|ENSG00000172995|Q9UBL0-4|ARPP21;nc|ENSG00000172995|Q9UBL0|ARPP21;nc|ENSG00000172995|Q9UBL0-3|ARPP21;ENSG00000172995|ENST00000684406|ARPP21	nc|ENSG00000172995|Q9UBL0-4|ARPP21	nc|ENSG00000172995|Q9UBL0-4|ARPP21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2601318359375	2	405.260197	808.50584	-0.083373	-3.3788E-05	0.23964	9.7116E-05	0.15627	6.3328E-05	405.2601608529555	71.47	2.5689	71.526	70.795	73.364	0.056572					203	93	3	0	0	0	0.028313	3	18121	18121;18162;18208		90.836	0	1	2023300			15439	6685	8726	8727	19484;19485;19486	19484					0.09392775879518922
IPPIQVTKV	9	Unmodified	_IPPIQVTKV_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.81915283203125	2	497.81841	993.622267	0.52189	0.0002598	0.13202	6.5723E-05	0.65391	0.00032553	497.8184101123611	46.791	1.3415	46.791	46.43	47.771	0					68	47	3	0	0	0	0.01909	1	10619	10619		65.474	34.205	1	1512100			15440	7872	8727	8728	19487	19487					0.12520094379431157
IPPIQVTKV	9	Unmodified	_IPPIQVTKV_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.81890869140625	2	497.81841	993.622267	0.49371	0.00024578	-1.3132	-0.00065373	-0.81948	-0.00040795	497.81847749941323	46.862	1.2338	46.915	46.44	47.674	0.052574					108	45	3	0	0	0	0.003673	1	10570	10570		96.936	55.096	1	1492100			15441	7872	8727	8728	19488	19488					0.12520094379431157
IPPIQVTKV	9	Unmodified	_IPPIQVTKV_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.8188171386719	2	497.81841	993.622267	0.50286	0.00025033	0.30499	0.00015183	0.80785	0.00040216	497.8184720056711	46.723	1.2085	46.778	46.44	47.648	0.054375					57	43	2	0	0	0	0.052436	1	10556	10556		74.2	39.268	1	1578600			15442	7872	8727	8728	19489	19489					0.12520094379431157
IPPLATHTI	9	Unmodified	_IPPLATHTI_					0	0	0		nc|ENSG00000117335|P15529-2|CD46;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-13|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-15|CD46;ENST00000469535.5_1_1:207925470-207933074:+|nuORF	nc|ENSG00000117335|P15529-2|CD46	nc|ENSG00000117335|P15529-2|CD46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.78717041015625	2	481.78711	961.559667	0.32501	0.00015658	0.2534	0.00012209	0.57841	0.00027867	481.7870728759208	45.12	1.117	45.12	44.771	45.888	0					99	40	3	0	0	0	0.00077644	4	10063	10023;10063;10110;10160		125.62	68.153	1	2585200			15443	2789	8728	8729	19490;19491;19492;19493	19491					0.07734948311224343
IPPLATHTI	9	Unmodified	_IPPLATHTI_					0	0	0		nc|ENSG00000117335|P15529-2|CD46;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-13|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-15|CD46;ENST00000469535.5_1_1:207925470-207933074:+|nuORF	nc|ENSG00000117335|P15529-2|CD46	nc|ENSG00000117335|P15529-2|CD46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.787353515625	2	481.78711	961.559667	0.39937	0.00019241	0.29386	0.00014158	0.69323	0.00033399	481.7870782737787	45.075	1.0095	45.143	44.791	45.801	0.068569					99	35	4	0	0	0	0.00010798	4	10050	10002;10050;10093;10143		139.54	75.981	1	2794800			15444	2789	8728	8729	19494;19495;19496;19497	19495					0.07734948311224343
IPPLATHTI	9	Unmodified	_IPPLATHTI_					0	0	0		nc|ENSG00000117335|P15529-2|CD46;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-13|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-15|CD46;ENST00000469535.5_1_1:207925470-207933074:+|nuORF	nc|ENSG00000117335|P15529-2|CD46	nc|ENSG00000117335|P15529-2|CD46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7875061035156	2	481.78711	961.559667	0.39724	0.00019139	0.36458	0.00017565	0.76182	0.00036704	481.7871008850563	45.103	1.0413	45.178	44.78	45.821	0.07505					108	38	4	0	0	0	0.00077644	4	10001	10001;10053;10100;10149		125.62	62.062	1	2461100			15445	2789	8728	8729	19498;19499;19500;19501	19498					0.07734948311224343
IPPLCLFLL	9	Unmodified	_IPPLCLFLL_					0	0	0			REV__ENST00000258962.4_1_17:56084436-56084706:-|nuORF	REV__ENST00000258962.4_1_17:56084436-56084706:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8140869140625	2	514.814282	1027.61401	0.34397	0.00017708	1.9076	0.00098208	2.2516	0.0011592	514.8147994486816	70.247	1.1998	70.247	69.703	70.902	0					85	43	4	0	0	0	0.16905	1	17815	17815		28.173	1.2896	1	2623600	+		15446	19570	8729	8730	19502	19502					0.1013082413844586
IPPLLLNV	8	Unmodified	_IPPLLLNV_					0	0	0		nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;NSUN2|p.V238Wfs*14|1|0.3|ENSG00000037474|chr5:6620209-6620209|C/-|frameshift_variant	nc|ENSG00000037474|Q08J23-2|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.2305908203125	2	439.789121	877.56369	0.093794	4.125E-05	-0.41571	-0.00018282	-0.32191	-0.00014157	439.78884230139056	81.851	0.41592	81.851	81.608	82.024	0					25	16	2	0	0	0	0.32778	1	21327	21327		14.582	4.3983	1	80736			15447	585	8730	8731	19503	19503					0.1200103780495283
IPPPKRPLK	9	Unmodified	_IPPPKRPLK_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7538452148438	2	523.347669	1044.68079	0.45776	0.00023957	-0.58598	-0.00030667	-0.12822	-6.7101E-05	523.347456067693	55.279	0.21016	55.279	55.221	55.431	0					10	7	2	0	0	0	0.25622	1	13184	13184		7.2892	2.5332	1	90391			15448	12810	8731	8732	19504	19504					0.16023195744537588
IPPPVPSEFN	10	Unmodified	_IPPPVPSEFN_					0	0	0		nc|ENSG00000132952|Q5W0Q7-2|USPL1;ENSG00000132952|ENST00000255304|USPL1	nc|ENSG00000132952|Q5W0Q7-2|USPL1	nc|ENSG00000132952|Q5W0Q7-2|USPL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2342529296875	2	548.787307	1095.56006	0.094351	5.1779E-05	1.4644	0.00080362	1.5587	0.0008554	548.7880628835323	61.606	0.67313	61.703	61.385	62.058	0.096985					38	24	2	0	0	0	0.27337	1	15196	15196		22.736	0	1	497080			15449	3680	8732	8733	19505	19505					0.01610323240447542
IPPQLRFPL	9	Unmodified	_IPPQLRFPL_					0	0	0			REV__ENST00000449946.5_1_15:43885850-43886314:+|nuORF	REV__ENST00000449946.5_1_15:43885850-43886314:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8323974609375	2	540.831852	1079.64915	0.46712	0.00025263	-0.49331	-0.0002668	-0.026195	-1.4167E-05	540.8325338539388	68.534	2.4612	68.606	68.24	70.701	0.071938					290	88	6	0	0	0	0.20344	1	17243	17243		23.148	0.41214	1	80195000	+		15450	21109	8733	8734	19506	19506					0.11251202990615639
IPPRARLTL	9	Unmodified	_IPPRARLTL_					0	0	0			REV__EPS8L2|p.S310Ifs*2|1|0.2|ENSG00000177106|chr11:721934-721935|-/A|frameshift_variant	REV__EPS8L2|p.S310Ifs*2|1|0.2|ENSG00000177106|chr11:721934-721935|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2852783203125	2	518.834926	1035.6553	0.35206	0.00018266	-0.31122	-0.00016147	0.040836	2.1187E-05	518.8347837717745	40.548	0.51623	40.648	40.368	40.884	0.099403					35	18	3	0	0	0	0.25066	1	8615	8615		7.2892	1.0834	1	394730	+		15451	22680	8734	8735	19507	19507					0.13889721222130902
IPPSDTRSLIS	11	Unmodified	_IPPSDTRSLIS_					0	0	0		nc|ENSG00000107249|Q8NEA6|GLIS3;ENSG00000107249|ENST00000381971|GLIS3	nc|ENSG00000107249|Q8NEA6|GLIS3	nc|ENSG00000107249|Q8NEA6|GLIS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.3134155273438	2	593.327328	1184.6401	0.50177	0.00029772	0.5962	0.00035374	1.098	0.00065146	593.327838424544	89.578	0.9143	89.577	89.051	89.965	-0.00080872					102	63	2	0	0	0	0.44192	1	23705	23705		5.7319	0.50118	1	154260			15452	2118	8735	8736	19508	19508					0.055167648436281524
IPPSGPAGEL	10	Unmodified	_IPPSGPAGEL_					0	0	0		nc|ENSG00000070081|P80303-2|NUCB2;ENSG00000070081|ENST00000529010|NUCB2	nc|ENSG00000070081|P80303-2|NUCB2	nc|ENSG00000070081|P80303-2|NUCB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2769775390625	2	469.2531	936.491647	0.12826	6.0185E-05	0.77654	0.00036439	0.9048	0.00042458	469.253423659543	40.7	1.0478	40.7	40.307	41.355	0					69	38	3	0	0	0	0.20667	1	8748	8748		46.021	22	1	335350			15453	918	8736	8737	19509	19509					0.0208607866057946
IPPVAVRL	8	Unmodified	_IPPVAVRL_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENST00000535717.1_1_12:6679844-6680280:-|nuORF	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.78717041015625	2	432.786913	863.559273	0.082423	3.5672E-05	0.40309	0.00017445	0.48551	0.00021012	432.7869156342635	51.176	1.5582	51.176	50.766	52.324	0					124	57	3	0	0	0	0.033363	6	11871	11871;11920;11968;12017;12069;12095		86.121	19.086	1	2350300			15454	2373	8737	8738	19510;19511;19512;19513;19514;19515	19510					0.12203573382032573
IPPVAVRL	8	Unmodified	_IPPVAVRL_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENST00000535717.1_1_12:6679844-6680280:-|nuORF	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.786865234375	2	432.786913	863.559273	0.039884	1.7261E-05	0.30387	0.00013151	0.34375	0.00014877	432.7869120279337	51.157	1.5923	51.204	50.741	52.333	0.046574					125	58	3	0	0	0	0.042326	4	11957	11866;11913;11957;12009		81.864	14.829	1	2640000			15455	2373	8737	8738	19516;19517;19518;19519	19518					0.12203573382032573
IPPVAVRL	8	Unmodified	_IPPVAVRL_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENST00000535717.1_1_12:6679844-6680280:-|nuORF	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.7870788574219	2	432.786913	863.559273	0.049358	2.1361E-05	0.45779	0.00019813	0.50715	0.00021949	432.7869623163893	51.177	1.723	51.187	50.757	52.48	0.0095673					138	64	3	0	0	0	0.042326	4	11899	11899;11945;11995;12048		81.864	18.301	1	2817100			15456	2373	8737	8738	19520;19521;19522;19523	19520					0.12203573382032573
IPPVTPSI	8	Unmodified	_IPPVTPSI_					0	0	0		ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2497863769531	2	412.249829	822.485105	0.019247	7.9344E-06	-0.16479	-6.7934E-05	-0.14554	-5.9999E-05	412.24965107245384	57.585	1.6582	57.585	56.937	58.595	0					104	59	2	0	0	0	0.016422	1	13804	13804		106.85	20.724	1	831820			15457	4303	8738	8739	19524	19524					0.06676185499861731
IPPVTPSI	8	Unmodified	_IPPVTPSI_					0	0	0		ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2494201660156	2	412.249829	822.485105	0.093006	3.8342E-05	-0.1864	-7.6843E-05	-0.093394	-3.8502E-05	412.2495545860235	57.364	1.6019	57.347	56.811	58.413	-0.0172					97	58	2	0	0	0	0.016422	1	13822	13822		106.85	17.419	1	757070			15458	4303	8738	8739	19525	19525					0.06676185499861731
IPPVTPSI	8	Unmodified	_IPPVTPSI_					0	0	0		ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	412.249829	822.485105	0.2327	9.593E-05	-0.32734	-0.00013495	-0.094641	-3.9016E-05	412.2495585254074	57.396	1.5879	57.481	56.966	58.554	0.085621	0.010329	-8.5066E-05	NaN	106.85	97	57	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	850750			15459	4303	8738	8739							0.06676185499861731
IPPYVPRF	8	Unmodified	_IPPYVPRF_					0	0	0		nc|ENSG00000151491|Q12929-2|EPS8;ENSG00000151491|ENST00000281172|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7843322753906	2	494.78437	987.554188	0.45105	0.00022317	-0.41792	-0.00020678	0.033132	1.6393E-05	494.78415794426724	57.592	1.4795	57.592	57.116	58.595	0					149	52	4	0	0	0	0.12267	3	13990	13885;13937;13990		56.541	28.368	1	2984400			15460	4966	8739	8740	19526;19527;19528	19528					0.05991269519427078
IPPYVPRF	8	Unmodified	_IPPYVPRF_					0	0	0		nc|ENSG00000151491|Q12929-2|EPS8;ENSG00000151491|ENST00000281172|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7845458984375	2	494.78437	987.554188	0.43229	0.00021389	-0.41514	-0.0002054	0.017153	8.4871E-06	494.7841586612577	57.422	1.5306	57.507	57.075	58.606	0.085621					142	55	4	0	0	0	0.17761	2	13844	13844;13897		46.921	26.05	1	3643800			15461	4966	8739	8740	19529;19530	19529					0.05991269519427078
IPPYVPRF	8	Unmodified	_IPPYVPRF_					0	0	0		nc|ENSG00000151491|Q12929-2|EPS8;ENSG00000151491|ENST00000281172|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7843933105469	2	494.78437	987.554188	0.27894	0.00013801	-0.11866	-5.8713E-05	0.16027	7.93E-05	494.78421842717364	57.603	1.4606	57.585	57.144	58.605	-0.0172					139	53	4	0	0	0	0.10409	2	13892	13892;13944		59.795	26.05	1	3513000			15462	4966	8739	8740	19531;19532	19531					0.05991269519427078
IPQAPISPL	9	Unmodified	_IPQAPISPL_					0	0	0			REV__nc|ENSG00000106327|Q9UP52-2|TFR2	REV__nc|ENSG00000106327|Q9UP52-2|TFR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.2891845703125	2	468.28166	934.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.23	1	73.23	72.73	73.73	0								0	0	0	0.22065	1	18706	18706		15.847	1.0089	1		+		15463	14514	8740	8741	19533	19533					0.07887545936955576
IPQEALVRF	9	Unmodified	_IPQEALVRF_					0	0	0		ENST00000508173.5_1_5:149240460-149276122:-|nuORF;ENSG00000132915|ENST00000255266|PDE6A	ENST00000508173.5_1_5:149240460-149276122:-|nuORF	ENST00000508173.5_1_5:149240460-149276122:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2910766601562	2	536.811116	1071.60768	0.50616	0.00027171	-2.9735	-0.0015962	-2.4673	-0.0013245	536.8093191679491	44.266	0.35726	44.341	44.174	44.531	0.075047					20	12	2	0	0	0	0.25526	1	9747	9747		7.9102	0	1	159750			15464	3677	8741	8742	19534	19534					0.07474022231258459
IPQEALVRF	9	Unmodified	_IPQEALVRF_					0	0	0		ENST00000508173.5_1_5:149240460-149276122:-|nuORF;ENSG00000132915|ENST00000255266|PDE6A	ENST00000508173.5_1_5:149240460-149276122:-|nuORF	ENST00000508173.5_1_5:149240460-149276122:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	536.811116	1071.60768	0.69705	0.00037418	-3.8232	-0.0020523	-3.1262	-0.0016782	537.3105483110717	44.548	0.30185	44.548	44.408	44.71	0	0.11205	-0.00028839	NaN	10.824	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127700			15465	3677	8741	8742							0.07474022231258459
IPQEALVRF	9	Unmodified	_IPQEALVRF_					0	0	0		ENST00000508173.5_1_5:149240460-149276122:-|nuORF;ENSG00000132915|ENST00000255266|PDE6A	ENST00000508173.5_1_5:149240460-149276122:-|nuORF	ENST00000508173.5_1_5:149240460-149276122:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	536.811116	1071.60768	0.53113	0.00028512	-3.4644	-0.0018597	-2.9333	-0.0015746	536.8089769086608	44.351	0.42776	44.419	44.223	44.651	0.068569	-0.016722	9.6832E-05	NaN	10.824	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222590			15466	3677	8741	8742							0.07474022231258459
IPQERGLSSL	10	Unmodified	_IPQERGLSSL_					0	0	0		GGCX|p.D614Wfs*7|1|0.08|ENSG00000115486|chr2:85550970-85550973|GGTC/-|frameshift_variant;ENSG00000115486|ENST00000233838|GGCX;ENST00000496962.1_1_2:85786016-85788551:-|nuORF;nc|ENSG00000115486|P38435-2|GGCX;ENST00000465637.5_1_2:85775111-85788551:-|nuORF;ENST00000481541.1_1_2:85786016-85788551:-|nuORF	GGCX|p.D614Wfs*7|1|0.08|ENSG00000115486|chr2:85550970-85550973|GGTC/-|frameshift_variant	GGCX|p.D614Wfs*7|1|0.08|ENSG00000115486|chr2:85550970-85550973|GGTC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3089599609375	2	550.308938	1098.60332	0.27572	0.00015173	0.37943	0.0002088	0.65515	0.00036053	550.3090913395304	42.717	0.71393	42.717	42.435	43.149	0					60	25	3	0	0	0	0.18007	1	9371	9371		35.08	3.0422	1	532250			15467	2652	8742	8743	19535	19535					0.05796513017708094
IPQGGRGAIQF	11	Unmodified	_IPQGGRGAIQF_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.317138671875	2	572.317097	1142.61964	0.21477	0.00012292	-0.6922	-0.00039616	-0.47742	-0.00027324	572.3166449916407	44.006	0.89228	44.006	43.741	44.633	0					79	32	3	0	0	0	0.002127	1	9702	9702		86.332	42.559	1	1508400			15468	1682	8743	8744	19536	19536					0.0540363897446241
IPQGGRGAIQF	11	Unmodified	_IPQGGRGAIQF_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.317138671875	2	572.317097	1142.61964	0.38793	0.00022202	-0.8281	-0.00047393	-0.44017	-0.00025192	572.3165587817787	43.808	1.3932	43.886	43.567	44.961	0.077515					94	51	3	0	0	0	0.0002783	1	9638	9638		106.94	61.241	1	1438100			15469	1682	8743	8744	19537	19537					0.0540363897446241
IPQHMIQK	8	Unmodified	_IPQHMIQK_					0	0	0		ENST00000519132.5_1_5:178032263-178039506:-|nuORF;ENST00000519583.5_1_5:178030620-178044013:-|nuORF;ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENSG00000113240|ENST00000316308|CLK4	ENST00000519132.5_1_5:178032263-178039506:-|nuORF	ENST00000519132.5_1_5:178032263-178039506:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2928466796875	2	497.778762	993.542971	0.35939	0.00017889	0.17354	8.6383E-05	0.53292	0.00026528	497.7788005971765	41.697	0.58617	41.697	41.555	42.141	0					38	25	2	0	0	0	0.31375	1	9003	9003		19.439	1.304	1	4284700			15470	2482	8744	8745	19538	19538					0.04594124153618395
IPQIILKVF	9	Unmodified	_IPQIILKVF_					0	0	0		ENST00000440835.6_1_12:71032743-71032788:-|nuORF	ENST00000440835.6_1_12:71032743-71032788:-|nuORF	ENST00000440835.6_1_12:71032743-71032788:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.852294921875	2	535.852253	1069.68995	0.54494	0.00029201	0.078796	4.2223E-05	0.62374	0.00033423	535.8522126756276	71.711	0.55697	71.711	71.491	72.048	0					42	19	3	0	0	0	0.28128	1	18271	18271		11.64	0.81637	1	666230			15471	10551	8745	8746	19539	19539					0.1578954431022339
IPQIILKVF	9	Unmodified	_IPQIILKVF_					0	0	0		ENST00000440835.6_1_12:71032743-71032788:-|nuORF	ENST00000440835.6_1_12:71032743-71032788:-|nuORF	ENST00000440835.6_1_12:71032743-71032788:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	535.852253	1069.68995	0.54494	0.00029201	0.078796	4.2223E-05	0.62374	0.00033423	535.8522126756276	71.711	0.55697	71.711	71.491	72.048	0	-0.0064609	-6.8151E-05	NaN	11.64	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	666230			15472	10551	8745	8746							0.1578954431022339
IPQIILKVF	9	Unmodified	_IPQIILKVF_					0	0	0		ENST00000440835.6_1_12:71032743-71032788:-|nuORF	ENST00000440835.6_1_12:71032743-71032788:-|nuORF	ENST00000440835.6_1_12:71032743-71032788:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	535.852253	1069.68995	0.36652	0.0001964	0.39625	0.00021233	0.76277	0.00040873	535.8523092808297	71.686	0.5444	71.743	71.513	72.057	0.056572	0.025609	0.00027206	NaN	11.64	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	563310			15473	10551	8745	8746							0.1578954431022339
IPQIMPSI	8	Oxidation (M)	_IPQIM(Oxidation (M))PSI_		IPQIM(1)PSI		IPQIM(82)PSI	0	0	1		ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7544860839844	2	457.754421	913.494289	0.069651	3.1883E-05	0.27063	0.00012388	0.34028	0.00015576	457.75443453779616	59.02	0.55465	59.02	58.712	59.267	0					52	19	3	0	0	0	0.042854	1	14315	14315		81.613	7.1903	1	2848100			15474	2522	8746	8747	19540	19540		312			0.03408210793872968
IPQIMPSI	8	Oxidation (M)	_IPQIM(Oxidation (M))PSI_		IPQIM(1)PSI		IPQIM(82)PSI	0	0	1		ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7544860839844	2	457.754421	913.494289	-0.072607	-3.3236E-05	0.54711	0.00025044	0.4745	0.0002172	457.7545501019626	59.52	0.79457	59.52	59.241	60.035	0					73	27	4	0	0	0	0.042854	1	14463	14463		81.613	7.1903	1	3337200			15475	2522	8746	8747	19541	19541		312			0.03408210793872968
IPQIMPSI	8	Oxidation (M)	_IPQIM(Oxidation (M))PSI_		IPQIM(1)PSI		IPQIM(85)PSI	0	0	1		ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7543640136719	2	457.754421	913.494289	0.16618	7.6068E-05	0.04055	1.8562E-05	0.20673	9.4631E-05	457.7543847194833	58.9	0.61349	58.992	58.677	59.29	0.091301					69	21	4	0	0	0	0.035151	1	14261	14261		85.272	7.1226	1	2967800			15476	2522	8746	8747	19542	19542		312			0.03408210793872968
IPQIMPSI	8	Oxidation (M)	_IPQIM(Oxidation (M))PSI_		IPQIM(1)PSI		IPQIM(64)PSI	0	0	1		ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7544860839844	2	457.754421	913.494289	0.027906	1.2774E-05	0.38407	0.00017581	0.41198	0.00018859	457.7545284224595	59.392	0.8045	59.483	59.238	60.043	0.091305					85	28	4	0	0	0	0.079438	1	14405	14405		64.236	6.765	1	3518200			15477	2522	8746	8747	19543	19543		312			0.03408210793872968
IPQIMPSI	8	Oxidation (M)	_IPQIM(Oxidation (M))PSI_		IPQIM(1)PSI		IPQIM(61)PSI	0	0	1		ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7544250488281	2	457.754421	913.494289	0.23561	0.00010785	0.10633	4.8671E-05	0.34194	0.00015652	457.75436881720276	58.963	0.56471	58.949	58.631	59.196	-0.014267					49	19	3	0	0	0	0.095164	1	14285	14285		61.357	6.5839	1	2873100			15478	2522	8746	8747	19544	19544		312			0.03408210793872968
IPQIMPSI	8	Oxidation (M)	_IPQIM(Oxidation (M))PSI_		IPQIM(1)PSI		IPQIM(93)PSI	0	0	1		ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7544860839844	2	457.754421	913.494289	0.31039	0.00014208	0.24852	0.00011376	0.5589	0.00025584	457.7544016020021	59.458	0.74156	59.446	59.199	59.94	-0.011486					67	25	3	0	0	0	0.026838	1	14441	14441		92.822	6.7008	1	3584900			15479	2522	8746	8747	19545	19545		312			0.03408210793872968
IPQKQREITL	10	Unmodified	_IPQKQREITL_					0	0	0		nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2472839355469	3	409.24695	1224.71902	-0.053694	-2.1974E-05	0.8576	0.00035097	0.80391	0.000329	409.2473696484088	30.602	1.8427	30.602	29.659	31.502	0					105	65	2	0	0	0	0.067258	2	5621	5573;5621		48.561	31.512	1	3283100			15480	5998	8747	8748	19546;19547	19547					0.11565036868546485
IPQKQREITL	10	Unmodified	_IPQKQREITL_					0	0	0		nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.24737548828125	3	409.24695	1224.71902	0.067118	2.7468E-05	0.3642	0.00014905	0.43132	0.00017652	409.247296182692	30.566	1.8503	30.594	29.735	31.586	0.027946					163	65	6	0	0	0	0.11865	3	5619	5572;5619;5645		44.945	27.896	1	3308800			15481	5998	8747	8748	19548;19549;19550	19549					0.11565036868546485
IPQKQREITL	10	Unmodified	_IPQKQREITL_					0	0	0		nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	613.8463745117188	2	613.366787	1224.71902	0.2431	0.00014911	-0.25595	-0.00015699	-0.012854	-7.8842E-06	613.3669882268798	30.562	1.119	30.59	30.189	31.308	0.027946					84	39	3	0	0	0	0.17727	1	5594	5594		59.052	39.691	1	731680			15482	5998	8747	8748	19551	19551					0.11565036868546485
IPQKQREITL	10	Unmodified	_IPQKQREITL_					0	0	0		nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.2461853027344	3	409.24695	1224.71902	-0.15244	-6.2384E-05	0.53189	0.00021767	0.37945	0.00015529	409.24730793060115	30.521	1.7344	30.548	29.759	31.493	0.027157					161	61	5	0	0	0	0.15113	3	5554	5554;5598;5644		33.821	16.913	1	3051500			15483	5998	8747	8748	19552;19553;19554	19552					0.11565036868546485
IPQKQREITL	10	Unmodified	_IPQKQREITL_					0	0	0		nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	613.8465576171875	2	613.366787	1224.71902	0.02939	1.8027E-05	-0.13047	-8.0025E-05	-0.10108	-6.1998E-05	613.3669745028169	30.587	1.0421	30.614	30.25	31.292	0.027157					82	37	3	0	0	0	0.16602	1	5636	5636		61.09	37.3	1	644540			15484	5998	8747	8748	19555	19555					0.11565036868546485
IPQKQREITL	10	Unmodified	_IPQKQREITL_					0	0	0		nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	613.366787	1224.71902	0.27174	0.00016668	-0.36407	-0.00022331	-0.092321	-5.6627E-05	613.3667385971746	30.585	0.94897	30.585	30.282	31.231	0	-0.011361	-0.00011197	NaN	61.09	80	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	580300			15485	5998	8747	8748							0.11565036868546485
IPQKTKGQ	8	Unmodified	_IPQKTKGQ_					0	0	0		ENSG00000255393|ENST00000642343|OOSP4B	ENSG00000255393|ENST00000642343|OOSP4B	ENSG00000255393|ENST00000642343|OOSP4B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.26934814453125	2	450.269084	898.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.993	1	80.966	80.466	81.466	-0.026825								0	0	0	0.36169	1	21060	21060		9.3474	0	1				15486	8617	8748	8749	19556	19556					0.07029491134380805
IPQKVQYK	8	Unmodified	_IPQKVQYK_					0	0	0			REV__ENSG00000155495|ENST00000285879|MAGEC1	REV__ENSG00000155495|ENST00000285879|MAGEC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.80859375	2	502.300384	1002.58622	0.45914	0.00023063	-3.0512	-0.0015326	-2.592	-0.001302	502.29906145167917	32.039	0.10912	32.039	31.982	32.091	0					5	3	2	0	0	0	0.34218	1	6044	6044		9.3474	2.0582	1	199400	+		15487	16699	8749	8750	19557	19557					0.08502637202559526
IPQLLSKLQIY	11	Unmodified	_IPQLLSKLQIY_					0	0	0			REV__nc|ENSG00000172987|Q8WWQ2-2|HPSE2	REV__nc|ENSG00000172987|Q8WWQ2-2|HPSE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.5740051269531	3	439.270984	1314.79112	0.028182	1.238E-05	0.81599	0.00035844	0.84418	0.00037082	439.2714085557385	32.914	0.75388	32.914	32.582	33.336	0					39	26	2	0	0	0	0.33287	1	6277	6277		2.8433	1.7335	1	146380	+		15488	17754	8750	8751	19558	19558					0.14631951222281714
IPQPAKVP	8	Unmodified	_IPQPAKVP_					0	0	0		nc|ENSG00000168334|Q702N8-3|XIRP1;ENSG00000168334|ENST00000340369|XIRP1	nc|ENSG00000168334|Q702N8-3|XIRP1	nc|ENSG00000168334|Q702N8-3|XIRP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.77398681640625	2	425.263271	848.511988	-0.95143	-0.00040461	0.65986	0.00028062	-0.29157	-0.00012399	425.2633347952194	35.175	0.906	35.251	34.657	35.563	0.075302					61	32	3	0	0	0	0.3671	1	6857	6857		23.148	1.4018	1	327520			15489	6269	8751	8752	19559	19559					0.08167294111046886
IPQQTQSWY	9	Unmodified	_IPQQTQSWY_					0	0	0		nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA	nc|ENSG00000162599|Q12857-3|NFIA	nc|ENSG00000162599|Q12857-3|NFIA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3192138671875	2	575.780013	1149.54547	0.3421	0.00019698	0.41543	0.0002392	0.75753	0.00043617	575.779794689292	45.26	0.58521	45.325	45.062	45.647	0.065048					60	21	4	0	0	0	0.25323	1	10026	10026		10.074	2.1638	1	765080			15490	5584	8752	8753	19560	19560					-0.023317489077271603
IPQRRITK	8	Unmodified	_IPQRRITK_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7695007324219	2	506.324725	1010.6349	0.53863	0.00027272	-0.37213	-0.00018842	0.1665	8.4304E-05	506.32447701877385	45.28	0.70771	45.342	45.087	45.795	0.062782					57	24	3	0	0	0	0.34247	1	10173	10173		4.756	0.42677	1	1228100	+		15491	17474	8753	8754	19561	19561					0.1300055056231031
IPQSRLRYTPH	11	Unmodified	_IPQSRLRYTPH_					0	0	0		nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1	nc|ENSG00000164951|Q9P0J1-2|PDP1	nc|ENSG00000164951|Q9P0J1-2|PDP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2769775390625	3	456.589599	1366.74697	0.27811	0.00012698	-0.39678	-0.00018117	-0.11868	-5.4186E-05	456.58921326618974	42.137	0.25695	42.228	42.067	42.324	0.091362					16	8	2	0	0	0	0.33056	1	9135	9135		8.7518	5.1591	1	200640			15492	5907	8754	8755	19562	19562					0.07826359848627362
IPQYLGQL	8	Unmodified	_IPQYLGQL_					0	0	0		nc|ENSG00000157343|Q5T9G4-3|ARMC12;ENSG00000157343|ENST00000373866|ARMC12;nc|ENSG00000157343|Q5T9G4-2|ARMC12	nc|ENSG00000157343|Q5T9G4-3|ARMC12	nc|ENSG00000157343|Q5T9G4-3|ARMC12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2646789550781	2	466.26601	930.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.64	1	80.64	80.14	81.14	0								0	0	0	0.36169	1	20969	20969		9.3474	0.75416	1				15493	5296	8755	8756	19563	19563					0.049429729028588554
IPRAALLPL	9	Unmodified	_IPRAALLPL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.3212585449219	2	482.32112	962.627687	0.031361	1.5126E-05	0.15641	7.5439E-05	0.18777	9.0565E-05	482.3210295910176	61.486	1.1125	61.486	61.18	62.292	0					117	41	4	0	0	0	0.019896	4	15100	15055;15100;15151;15205		64.236	35.749	1	5547200			15494	6024	8756	8757	19564;19565;19566;19567	19565					0.14487817961901328
IPRAALLPL	9	Unmodified	_IPRAALLPL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.3211669921875	2	482.32112	962.627687	-0.081853	-3.9479E-05	0.50413	0.00024315	0.42228	0.00020367	482.3212568053046	61.349	0.80839	61.446	61.169	61.978	0.096985					87	29	4	0	0	0	0.0085732	3	15061	15011;15061;15105		81.613	41.656	1	6196500			15495	6024	8756	8757	19568;19569;19570	19569					0.14487817961901328
IPRAALLPL	9	Unmodified	_IPRAALLPL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.3212890625	2	482.32112	962.627687	0.0045591	2.1989E-06	0.26336	0.00012702	0.26792	0.00012922	482.3210932440122	61.463	1.1145	61.453	61.162	62.277	-0.0094566					110	40	5	0	0	0	0.015402	4	15080	15037;15080;15129;15180		71.134	38.828	1	5770500			15496	6024	8756	8757	19571;19572;19573;19574	19572					0.14487817961901328
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8638305664062	2	538.863152	1075.71175	0.30636	0.00016509	-0.13898	-7.489E-05	0.16739	9.0199E-05	538.8636576924124	73.809	7.976	73.809	73.417	81.393	0					609	304	6	0	0	0	0.010678	16	18858	18813;18858;18904;18946;18995;19042;19214;19466;19597;19703;19772;20304;20378;20603;20839;20968		81.89	40.051	1	83005000			15497	6024	8757	8758	19575;19576;19577;19578;19579;19580;19581;19582;19583;19584;19585;19586;19587;19588;19589;19590	19576					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8634033203125	2	538.863152	1075.71175	0.61507	0.00033144	-0.35498	-0.00019129	0.26009	0.00014015	538.862979226723	82.292	0.99561	82.292	82.11	83.105	0					53	36	2	0	0	0	0.20278	1	21553	21553		32.305	13.049	1	175760			15498	6024	8757	8758	19591	19591					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8634643554688	2	538.863152	1075.71175	0.63927	0.00034448	-0.0066351	-3.5754E-06	0.63263	0.0003409	538.8632093999281	87.695	0.67365	87.695	87.278	87.951	0					45	32	2	0	0	0	0.33268	1	23162	23162		15.847	9.124	1	112320			15499	6024	8757	8758	19592	19592					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8638305664062	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.455	1	84.455	83.955	84.955	0								0	0	0	0.26329	1	22138	22138		32.305	13.049	1				15500	6024	8757	8758	19593	19593					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.863525390625	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.888	1	86.888	86.388	87.388	0								0	0	0	0.26329	1	22888	22888		32.305	13.049	1				15501	6024	8757	8758	19594	19594					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8634643554688	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.167	1	90.167	89.667	90.667	0								0	0	0	0.33945	1	23891	23891		19.257	9.8739	1				15502	6024	8757	8758	19595	19595					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.86376953125	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.849	1	91.849	91.349	92.349	0								0	0	0	0.32028	1	24405	24405		25.399	11.493	1				15503	6024	8757	8758	19596	19596					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.769287109375	2	538.863152	1075.71175	0.702	0.00037828	-0.2477	-0.00013347	0.4543	0.00024481	538.8629925236401	84.921	0.72522	84.921	84.691	85.417	0					35	27	2	0	0	0	0.25875	1	22377	22377		32.305	13.049	1	102230			15504	6024	8757	8758	19597	19597					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3030395507812	2	538.863152	1075.71175	0.46595	0.00025109	0.025713	1.3856E-05	0.49167	0.00026494	538.8631356064392	91.486	0.53279	91.486	91.353	91.885	0					59	39	2	0	0	0	0.31358	1	24346	24346		13.906	4.5229	1	85983			15505	6024	8757	8758	19598	19598					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7869262695312	2	538.863152	1075.71175	0.75134	0.00040487	-0.5204	-0.00028042	0.23094	0.00012445	538.8627021456942	83.66	0.77957	83.66	83.105	83.885	0					47	29	2	0	0	0	0.25875	1	21948	21948		25.399	11.493	1	160340			15506	6024	8757	8758	19599	19599					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8637084960938	2	538.863152	1075.71175	0.34621	0.00018656	-0.079795	-4.2999E-05	0.26641	0.00014356	538.8636589420145	73.792	2.8279	73.844	73.36	76.188	0.052361					341	101	5	0	0	0	0.0048568	8	18838	18790;18838;18891;18942;18986;19031;19181;19282		92.491	42.558	1	96508000			15507	6024	8757	8758	19600;19601;19602;19603;19604;19605;19606;19607	19601					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8632202148438	2	538.863152	1075.71175	0.45428	0.0002448	-0.030971	-1.6689E-05	0.42331	0.00022811	538.8630341687838	76.311	2.0003	76.364	76.189	78.189	0.053413					177	71	3	0	0	0	0.15638	2	19748	19668;19748		37.974	13.953	1	547590			15508	6024	8757	8758	19608;19609	19609					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8634643554688	2	538.863152	1075.71175	0.16331	8.7999E-05	0.75611	0.00040744	0.91941	0.00049544	538.8635334418792	81.257	1.0779	81.326	81.027	82.105	0.068993					86	51	3	0	0	0	0.20278	1	21186	21186		32.305	13.049	1	202750			15509	6024	8757	8758	19610	19610					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8632202148438	2	538.863152	1075.71175	0.5226	0.00028161	-0.2181	-0.00011752	0.3045	0.00016408	538.8629270243272	86.463	1.6263	86.547	85.462	87.088	0.084251					110	63	2	0	0	0	0.20278	3	22564	22564;22698;22854		32.305	13.049	1	154750			15510	6024	8757	8758	19611;19612;19613	19611					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8633422851562	2	538.863152	1075.71175	0.49897	0.00026888	-0.25038	-0.00013492	0.24859	0.00013396	538.8628989410241	88.812	0.5628	88.902	88.646	89.209	0.089195					36	23	2	0	0	0	0.2593	2	23430	23430;23508		25.399	11.493	1	111520			15511	6024	8757	8758	19614;19615	19614					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8637084960938	2	538.863152	1075.71175	0.33393	0.00017994	0.011196	6.0333E-06	0.34513	0.00018598	538.8631048782506	95.053	0.49952	95.136	94.748	95.248	0.082779					62	43	2	0	0	0	0.20278	2	25401	25331;25401		32.305	13.049	1	127300			15512	6024	8757	8758	19616;19617	19617					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.863525390625	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.39	1	78.449	77.949	78.949	0.058151								0	0	0	0.26329	1	20269	20269		32.305	13.049	1				15513	6024	8757	8758	19618	19618					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8638916015625	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.894	1	78.952	78.452	79.452	0.058151								0	0	0	0.26329	1	20423	20423		32.305	13.049	1				15514	6024	8757	8758	19619	19619					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8632202148438	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.231	1	79.292	78.792	79.792	0.061417								0	0	0	0.26329	1	20525	20525		32.305	13.049	1				15515	6024	8757	8758	19620	19620					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8631591796875	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.476	1	82.549	82.049	83.049	0.073097								0	0	0	0.26329	1	21522	21522		32.305	13.049	1				15516	6024	8757	8758	19621	19621					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8634033203125	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.368	1	84.445	83.945	84.945	0.077095								0	0	0	0.26329	1	22107	22107		32.305	13.049	1				15517	6024	8757	8758	19622	19622					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8634643554688	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.069	1	93.159	92.659	93.659	0.089195								0	0	0	0.33661	1	24771	24771		20.454	8.8133	1				15518	6024	8757	8758	19623	19623					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2950439453125	2	538.863152	1075.71175	0.52992	0.00028556	-0.72597	-0.0003912	-0.19605	-0.00010564	538.8626885852432	82.469	1.2123	82.542	82.215	83.427	0.07309					69	47	2	0	0	0	0.25875	1	21457	21457		32.305	13.049	1	167580			15519	6024	8757	8758	19624	19624					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2846069335938	2	538.863152	1075.71175	0.30837	0.00016617	0.58694	0.00031628	0.89531	0.00048245	538.8633669443557	95.789	0.39696	95.867	95.726	96.123	0.077415					43	32	2	0	0	0	0.30586	1	25643	25643		19.257	5.3509	1	99584			15520	6024	8757	8758	19625	19625					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2831420898438	2	538.863152	1075.71175	0.2085	0.00011235	0.44905	0.00024198	0.65756	0.00035433	538.8632413959887	100.13	0.14468	100.17	100.08	100.23	0.038994					25	19	2	0	0	0	0.30586	1	26765	26765		13.906	4.5229	1	109310			15521	6024	8757	8758	19626	19626					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8640747070312	2	538.863152	1075.71175	0.4674	0.00025186	-0.25863	-0.00013936	0.20877	0.0001125	538.8635128684075	73.891	6.5153	73.861	73.344	79.859	-0.030655					531	244	6	0	0	0	0.0048568	17	18896	18812;18854;18896;18943;18988;19034;19218;19317;19689;19750;19842;19899;20216;20333;20418;20516;20697		92.491	42.558	1	81453000			15522	6024	8757	8758	19627;19628;19629;19630;19631;19632;19633;19634;19635;19636;19637;19638;19639;19640;19641;19642;19643	19629					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8634033203125	2	538.863152	1075.71175	0.52517	0.00028299	0.36116	0.00019461	0.88633	0.00047761	538.8634175418118	81.455	1.0368	81.431	80.992	82.028	-0.02404					78	44	2	0	0	0	0.20278	1	21259	21259		32.305	13.049	1	188690			15523	6024	8757	8758	19644	19644					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8632202148438	2	538.863152	1075.71175	0.60181	0.0003243	0.036618	1.9732E-05	0.63843	0.00034403	538.8631374253018	88.757	1.221	88.755	88.192	89.413	-0.0028458					83	55	2	0	0	0	0.20278	2	23509	23509;23592		32.305	13.049	1	88236			15524	6024	8757	8758	19645;19646	19645					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.86181640625	2	538.863152	1075.71175	0.46327	0.00024964	-1.0314	-0.00055577	-0.56811	-0.00030613	538.8622161838898	113.78	0.12979	113.79	113.74	113.87	0.014832					22	16	2	0	0	0	0.38233	1	29604	29604		6.7232	3.1267	1	19387			15525	6024	8757	8758	19647	19647					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.863525390625	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.984	1	79.955	79.455	80.455	-0.028931								0	0	0	0.26329	1	20751	20751		32.305	13.049	1				15526	6024	8757	8758	19648	19648					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8635864257812	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.206	1	80.179	79.679	80.679	-0.026825								0	0	0	0.26329	1	20819	20819		32.305	13.049	1				15527	6024	8757	8758	19649	19649					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8632202148438	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.515	1	84.503	84.003	85.003	-0.01284								0	0	0	0.32028	1	22147	22147		25.399	11.493	1				15528	6024	8757	8758	19650	19650					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.86328125	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.377	1	86.368	85.868	86.868	-0.0090027								0	0	0	0.26329	1	22714	22714		32.305	13.049	1				15529	6024	8757	8758	19651	19651					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8632202148438	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.772	1	91.772	91.272	92.272	0.00046539								0	0	0	0.32028	1	24374	24374		25.399	11.493	1				15530	6024	8757	8758	19652	19652					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8634033203125	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.174	1	93.173	92.673	93.673	-0.00051117								0	0	0	0.32028	1	24804	24804		25.399	9.5521	1				15531	6024	8757	8758	19653	19653					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8632202148438	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.01	1	95.008	94.508	95.508	-0.0020142								0	0	0	0.32028	1	25367	25367		25.399	11.493	1				15532	6024	8757	8758	19654	19654					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.86328125	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.83	1	102.83	102.33	103.33	-0.0033646								0	0	0	0.32028	1	27368	27368		25.399	11.493	1				15533	6024	8757	8758	19655	19655					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.295166015625	2	538.863152	1075.71175	0.63373	0.00034149	-0.42089	-0.0002268	0.21283	0.00011469	538.8629784964282	82.481	0.70074	82.461	82.224	82.924	-0.020584					41	27	2	0	0	0	0.25875	1	21483	21483		32.305	13.049	1	213380			15534	6024	8757	8758	19656	19656					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7869873046875	2	538.863152	1075.71175	0.70472	0.00037975	-1.266	-0.00068221	-0.5613	-0.00030246	538.8622720062937	83.102	0.85248	83.082	82.842	83.695	-0.020584					53	34	2	0	0	0	0.25875	1	21892	21892		32.305	13.049	1	150060			15535	6024	8757	8758	19657	19657					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	538.863152	1075.71175	0.077596	4.1814E-05	-0.12389	-6.6762E-05	-0.046298	-2.4948E-05	538.8627659624703	113.63	0.082779	113.63	113.6	113.69	0	-0.022136	0.0003548	NaN	6.7232	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25581			15536	6024	8757	8758							0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	538.863152	1075.71175	0.23277	0.00012543	0.30052	0.00016194	0.53329	0.00028737	538.863211733385	96.095	0.45448	96.095	95.906	96.36	0	0.11405	-0.00012715	NaN	19.257	63	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76234			15537	6024	8757	8758							0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	538.863152	1075.71175	0.21173	0.00011409	-0.31091	-0.00016754	-0.099181	-5.3445E-05	539.3648232989417	113.55	0.073898	113.53	113.46	113.54	-0.017311	-0.12015	0.00015325	NaN	6.7232	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29533			15538	6024	8757	8758							0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	538.863152	1075.71175	0.6638	0.0003577	-0.62769	-0.00033824	0.036111	1.9459E-05	538.8626967377045	86.854	0.59608	86.848	86.482	87.078	-0.0056229	0.15074	-0.00034838	NaN	32.305	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118390			15539	6024	8757	8758							0.17692349058802392
IPRAALLPLLL	11	Unmodified	_IPRAALLPLLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.4055786132812	2	595.405184	1188.79581	0.72716	0.00043295	0.35265	0.00020997	1.0798	0.00064292	595.4051572852952	83.904	0.90961	83.904	83.617	84.527	0					82	35	3	0	0	0	0.010268	4	21972	21923;21972;22019;22074		69.105	30.929	1	1350200			15540	6024	8758	8759	19658;19659;19660;19661	19659					0.20896880155714825
IPRAALLPLLL	11	Unmodified	_IPRAALLPLLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.4055786132812	2	595.405184	1188.79581	0.6771	0.00040315	0.25817	0.00015371	0.93527	0.00055686	595.4050905405293	83.832	0.88501	83.909	83.652	84.537	0.077095					84	36	3	0	0	0	0.076087	3	21946	21899;21946;21992		45.7	14.431	1	1155400			15541	6024	8758	8759	19662;19663;19664	19663					0.20896880155714825
IPRAALLPLLL	11	Unmodified	_IPRAALLPLLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.4056396484375	2	595.405184	1188.79581	0.61621	0.00036689	0.45974	0.00027373	1.076	0.00064063	595.4051600565065	83.94	0.63553	83.923	83.643	84.279	-0.016823					63	29	3	0	0	0	0.069	2	21934	21934;21978		47.749	19.431	1	1093300			15542	6024	8758	8759	19665;19666	19665					0.20896880155714825
IPRDVRDTVL	10	Unmodified	_IPRDVRDTVL_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18;ENST00000568072.1_1_16:88666261-88675531:+|nuORF;ZC3H18|p.E930Sfs*3|1|0.25|ENSG00000158545|chr16:88631224-88631224|G/-|frameshift_variant	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.3436279296875	2	592.343312	1182.67207	0.48923	0.00028979	-0.2271	-0.00013452	0.26214	0.00015527	592.3432732875638	39.123	0.41077	39.223	39.1	39.511	0.099407					18	14	2	0	0	0	0.33753	1	8240	8240		14.957	2.7824	1	173440			15543	5361	8759	8760	19667	19667					0.08804177317415451
IPRDVRDTVL	10	Unmodified	_IPRDVRDTVL_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18;ENST00000568072.1_1_16:88666261-88675531:+|nuORF;ZC3H18|p.E930Sfs*3|1|0.25|ENSG00000158545|chr16:88631224-88631224|G/-|frameshift_variant	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	592.343312	1182.67207	0.063308	3.75E-05	0.12005	7.1108E-05	0.18335	0.00010861	592.3433849409881	39.292	0.46697	39.292	39.073	39.54	0	0.053964	0.00022775	NaN	14.957	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149390			15544	5361	8759	8760							0.08804177317415451
IPRDVRDTVL	10	Unmodified	_IPRDVRDTVL_					0	0	0		ENSG00000158545|ENST00000301011|ZC3H18;ENST00000568072.1_1_16:88666261-88675531:+|nuORF;ZC3H18|p.E930Sfs*3|1|0.25|ENSG00000158545|chr16:88631224-88631224|G/-|frameshift_variant	ENSG00000158545|ENST00000301011|ZC3H18	ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	592.343312	1182.67207	0.2229	0.00013203	-0.10209	-6.047E-05	0.12081	7.1563E-05	592.3433767095586	39.107	0.36416	39.2	39.105	39.47	0.09267	-0.038614	-3.5402E-05	NaN	14.957	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130540			15545	5361	8759	8760							0.08804177317415451
IPRENAQI	8	Unmodified	_IPRENAQI_					0	0	0		nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.76397705078125	2	470.764166	939.513779	-0.08453	-3.9794E-05	0.14753	6.9453E-05	0.063003	2.966E-05	470.7641806843539	28.539	0.70039	28.539	28.277	28.978	0					55	24	3	0	0	0	0.22007	1	5013	5013		39.95	3.8227	1	583320			15546	1768	8760	8761	19668	19668					0.04160303128992382
IPRENAQI	8	Unmodified	_IPRENAQI_					0	0	0		nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.7640380859375	2	470.764166	939.513779	-0.001262	-5.9408E-07	0.21977	0.00010346	0.21851	0.00010287	470.76413863734666	28.51	0.67792	28.506	28.306	28.984	-0.0042572					51	23	3	0	0	0	0.088223	2	5024	4974;5024		62.573	7.7991	1	624880			15547	1768	8760	8761	19669;19670	19670					0.04160303128992382
IPRENAQI	8	Unmodified	_IPRENAQI_					0	0	0		nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.7642822265625	2	470.764166	939.513779	-0.036378	-1.7125E-05	0.20823	9.8029E-05	0.17186	8.0904E-05	470.76418826186824	28.521	0.60013	28.521	28.294	28.894	0.0004673					46	20	3	0	0	0	0.12475	2	5014	4967;5014		56.177	10.156	1	611320			15548	1768	8760	8761	19671;19672	19672					0.04160303128992382
IPRENAQISL	10	Unmodified	_IPRENAQISL_					0	0	0		nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8226928710938	2	570.822212	1139.62987	0.24712	0.00014106	-0.025407	-1.4503E-05	0.22171	0.00012656	570.8222027119998	44.156	1.6299	44.156	43.545	45.175	0					144	59	3	0	0	0	0.040516	2	9636	9636;9685		61.09	17.108	1	5779000			15549	1768	8761	8762	19673;19674	19673					0.06564201909031908
IPRENAQISL	10	Unmodified	_IPRENAQISL_					0	0	0		nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8220825195312	2	570.822212	1139.62987	0.42375	0.00024189	-0.63878	-0.00036463	-0.21503	-0.00012274	570.8221009134619	43.615	0.5216	43.692	43.319	43.841	0.077515					45	18	3	0	0	0	0.17942	1	9627	9627		57.249	9.5004	1	1582900			15550	1768	8761	8762	19675	19675					0.06564201909031908
IPRENAQISL	10	Unmodified	_IPRENAQISL_					0	0	0		nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8224487304688	2	570.822212	1139.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.55	1	43.634	43.134	44.134	0.083996								0	0	0	0.0064893	1	9565	9565		77.049	19.327	1				15551	1768	8761	8762	19676	19676					0.06564201909031908
IPRFIKESL	9	Unmodified	_IPRFIKESL_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8347778320312	2	551.834591	1101.65463	0.57669	0.00031824	-0.041695	-2.3009E-05	0.535	0.00029523	551.8344452321827	46.806	0.54635	46.806	46.566	47.112	0					30	18	2	0	0	0	0.01909	2	10597	10588;10597		65.474	21.701	1	916770			15552	4671	8762	8763	19677;19678	19678					0.10786881782428281
IPRFIKESL	9	Unmodified	_IPRFIKESL_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8342895507812	2	551.834591	1101.65463	0.58757	0.00032424	-0.18808	-0.00010379	0.39949	0.00022045	551.8343459373123	46.685	0.59676	46.738	46.417	47.014	0.052574					50	21	3	0	0	0	0.038291	2	10530	10530;10580		57.249	20.743	1	1032400			15553	4671	8762	8763	19679;19680	19679					0.10786881782428281
IPRFIKESL	9	Unmodified	_IPRFIKESL_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8350219726562	2	551.834591	1101.65463	0.4536	0.00025031	0.083203	4.5914E-05	0.5368	0.00029622	551.8346077547812	46.672	0.68007	46.726	46.383	47.064	0.054371					48	23	3	0	0	0	0.038291	2	10538	10538;10593		57.249	20.743	1	1031400			15554	4671	8762	8763	19681;19682	19681					0.10786881782428281
IPRGAIIRV	9	Unmodified	_IPRGAIIRV_					0	0	0			REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2655944824219	2	497.829643	993.644734	0.23702	0.000118	-0.1655	-8.239E-05	0.071524	3.5607E-05	497.8294020021704	42.717	0.59659	42.717	42.49	43.087	0					24	21	2	0	0	0	0.25066	1	9370	9370		11.64	2.2929	1	185860	+		15555	13407	8763	8764	19683	19683					0.14765738567689368
IPRGLRAQI	9	Unmodified	_IPRGLRAQI_					0	0	0			REV__nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	REV__nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.324951171875	2	512.324725	1022.6349	0.010734	5.4991E-06	0.007239	3.7087E-06	0.017973	9.2078E-06	512.3246474059627	30.598	0.44523	30.625	30.448	30.893	0.027157					23	15	2	0	0	0	0.31038	1	5619	5619		7.2892	1.0834	1	158890	+		15556	16910	8764	8765	19684	19684					0.12448550562328364
IPRGLRAQI	9	Unmodified	_IPRGLRAQI_					0	0	0			REV__nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	REV__nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	512.324725	1022.6349	0.34969	0.00017915	0.050299	2.5769E-05	0.39999	0.00020492	512.3245817462371	30.597	0.44734	30.597	30.391	30.838	0	-0.01869	0.00016521	NaN	7.2892	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108540	+		15557	16910	8764	8765							0.12448550562328364
IPRHARQINTL	11	Unmodified	_IPRHARQINTL_					0	0	0		nc|ENSG00000140332|Q04726-7|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;nc|ENSG00000140332|Q04726|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;nc|ENSG00000140332|Q04726-2|TLE3;ENSG00000106829|ENST00000376552|TLE4;nc|ENSG00000106829|Q04727-3|TLE4;nc|ENSG00000106829|Q04727-4|TLE4;nc|ENSG00000106829|Q04727-2|TLE4;ENST00000462803.5_1_9:82286241-82340056:+|nuORF;ENSG00000196781|ENST00000376499|TLE1;ENST00000557815.1_1_15:70347348-70347768:-|nuORF	nc|ENSG00000140332|Q04726-7|TLE3	nc|ENSG00000140332|Q04726-7|TLE3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.2613220214844	3	440.261594	1317.76295	0.21452	9.4447E-05	-0.50108	-0.00022061	-0.28656	-0.00012616	440.26138460540614	23.883	0.71638	23.844	23.562	24.278	-0.038927					61	24	4	0	0	0	0.33207	1	3576	3576		5.5233	0.80737	1	90785			15558	4295	8765	8766	19685	19685					0.11678066085573846
IPRKVQIR	8	Unmodified	_IPRKVQIR_					0	0	0		nc|ENSG00000174672|Q8IWQ3-6|BRSK2;nc|ENSG00000174672|Q8IWQ3-3|BRSK2;nc|ENSG00000174672|Q8IWQ3-2|BRSK2;nc|ENSG00000174672|Q8IWQ3-4|BRSK2;ENSG00000174672|ENST00000528841|BRSK2;nc|ENSG00000174672|Q8IWQ3-5|BRSK2	nc|ENSG00000174672|Q8IWQ3-6|BRSK2	nc|ENSG00000174672|Q8IWQ3-6|BRSK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.3350524902344	2	505.335093	1008.65563	0.27171	0.0001373	-0.27738	-0.00014017	-0.0056757	-2.8681E-06	505.33496086073774	24.614	0.82413	24.558	24.25	25.074	-0.055931					84	28	4	0	0	0	0.37937	1	3861	3861		21.747	2.4897	1	677160			15559	6810	8766	8767	19686	19686					0.15165140941974187
IPRKVQIR	8	Unmodified	_IPRKVQIR_					0	0	0		nc|ENSG00000174672|Q8IWQ3-6|BRSK2;nc|ENSG00000174672|Q8IWQ3-3|BRSK2;nc|ENSG00000174672|Q8IWQ3-2|BRSK2;nc|ENSG00000174672|Q8IWQ3-4|BRSK2;ENSG00000174672|ENST00000528841|BRSK2;nc|ENSG00000174672|Q8IWQ3-5|BRSK2	nc|ENSG00000174672|Q8IWQ3-6|BRSK2	nc|ENSG00000174672|Q8IWQ3-6|BRSK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.335205078125	2	505.335093	1008.65563	0.095093	4.8054E-05	-0.058469	-2.9547E-05	0.036624	1.8507E-05	505.3350849427909	24.615	0.89469	24.584	24.286	25.181	-0.03141					82	30	4	0	0	0	0.43043	1	3855	3855		12.532	1.7076	1	758330			15560	6810	8766	8767	19687	19687					0.15165140941974187
IPRKVVGKF	9	Unmodified	_IPRKVVGKF_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.247314453125	2	522.339844	1042.66514	0.83936	0.00043843	1.8519	0.00096732	2.6913	0.0014057	522.8439344018849	56.851	0.24437	56.832	56.729	56.973	-0.019081					11	8	2	0	0	0	0.25417	1	13643	13643		2.0598	1.2661	1	93462			15561	3705	8767	8768	19688	19688					0.14550909227500597
IPRLAVISI	9	Unmodified	_IPRLAVISI_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.3269348144531	2	491.326402	980.638252	0.57912	0.00028454	-0.32028	-0.00015736	0.25884	0.00012718	491.32618544843257	66.051	0.92013	66.051	65.739	66.659	0					74	32	3	0	0	0	0.037019	2	16467	16467;16513		57.722	9.9733	1	2284800			15562	5202	8768	8769	19689;19690	19689					0.1471580061631812
IPRLAVISI	9	Unmodified	_IPRLAVISI_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.3263854980469	2	491.326402	980.638252	0.59934	0.00029447	-0.52435	-0.00025763	0.074994	3.6847E-05	491.326147769982	65.952	0.98355	66.04	65.731	66.714	0.088181					97	35	4	0	0	0	0.020233	2	16485	16437;16485		63.961	12.331	1	2408700			15563	5202	8768	8769	19691;19692	19692					0.1471580061631812
IPRLAVISI	9	Unmodified	_IPRLAVISI_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.32659912109375	2	491.326402	980.638252	0.41992	0.00020632	-0.47053	-0.00023119	-0.050614	-2.4868E-05	491.3262259830678	66.025	0.94195	66.012	65.748	66.69	-0.013588					85	33	5	0	0	0	0.04299	2	16472	16472;16522		55.503	5.9485	1	2390500			15564	5202	8768	8769	19693;19694	19693					0.1471580061631812
IPRLDLVI	8	Unmodified	_IPRLDLVI_					0	0	0		ENSG00000123643|ENST00000243389|SLC36A1;nc|ENSG00000186335|Q495M3-3|SLC36A2;nc|ENSG00000186335|Q495M3-2|SLC36A2;nc|ENSG00000186334|Q495N2-2|SLC36A3;ENSG00000186334|ENST00000335230|SLC36A3;nc|ENSG00000186334|Q495N2-3|SLC36A3;ENSG00000186335|ENST00000335244|SLC36A2	ENSG00000123643|ENST00000243389|SLC36A1;ENSG00000186335|ENST00000335244|SLC36A2	ENSG00000123643|ENST00000243389|SLC36A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.80548095703125	2	469.805303	937.596052	0.1449	6.8075E-05	0.4818	0.00022635	0.6267	0.00029443	469.80545248951427	68.801	0.7209	68.801	68.592	69.313	0					52	25	3	0	0	0	0.22007	1	17355	17355		39.95	0	1	698130			15565	3120;7609	8769	8770	19695	19695					0.12475825207923208
IPRLDLVI	8	Unmodified	_IPRLDLVI_					0	0	0		ENSG00000123643|ENST00000243389|SLC36A1;nc|ENSG00000186335|Q495M3-3|SLC36A2;nc|ENSG00000186335|Q495M3-2|SLC36A2;nc|ENSG00000186334|Q495N2-2|SLC36A3;ENSG00000186334|ENST00000335230|SLC36A3;nc|ENSG00000186334|Q495N2-3|SLC36A3;ENSG00000186335|ENST00000335244|SLC36A2	ENSG00000123643|ENST00000243389|SLC36A1;ENSG00000186335|ENST00000335244|SLC36A2	ENSG00000123643|ENST00000243389|SLC36A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.8056335449219	2	469.805303	937.596052	0.19639	9.2265E-05	0.32791	0.00015405	0.5243	0.00024632	469.80537440291687	68.792	0.61975	68.864	68.618	69.237	0.071938					49	22	3	0	0	0	0.32789	1	17331	17331		27.629	0	1	674230			15566	3120;7609	8769	8770	19696	19696					0.12475825207923208
IPRLDLVI	8	Unmodified	_IPRLDLVI_					0	0	0		ENSG00000123643|ENST00000243389|SLC36A1;nc|ENSG00000186335|Q495M3-3|SLC36A2;nc|ENSG00000186335|Q495M3-2|SLC36A2;nc|ENSG00000186334|Q495N2-2|SLC36A3;ENSG00000186334|ENST00000335230|SLC36A3;nc|ENSG00000186334|Q495N2-3|SLC36A3;ENSG00000186335|ENST00000335244|SLC36A2	ENSG00000123643|ENST00000243389|SLC36A1;ENSG00000186335|ENST00000335244|SLC36A2	ENSG00000123643|ENST00000243389|SLC36A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.8056945800781	2	469.805303	937.596052	0.24761	0.00011633	0.31789	0.00014935	0.5655	0.00026567	469.80537058204	68.874	0.6976	68.855	68.598	69.296	-0.01915					51	24	3	0	0	0	0.26862	1	17353	17353		34.402	0	1	666140			15567	3120;7609	8769	8770	19697	19697					0.12475825207923208
IPRLERILL	9	Unmodified	_IPRLERILL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.87158203125	2	561.871508	1121.72846	0.41527	0.00023333	-0.20067	-0.00011275	0.2146	0.00012058	561.8713040555463	57.108	0.75473	57.108	56.823	57.578	0					80	27	4	0	0	0	0.0046246	3	13732	13732;13776;13828		89.401	39.468	1	2577500			15568	8667	8770	8771	19698;19699;19700	19698					0.1724684994474046
IPRLERILL	9	Unmodified	_IPRLERILL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.8715209960938	2	561.871508	1121.72846	0.36811	0.00020683	-0.13922	-7.8225E-05	0.22888	0.0001286	561.871346862708	57.001	0.70519	57.079	56.778	57.484	0.078671					74	25	4	0	0	0	0.003317	3	13740	13688;13740;13791		99.755	55.897	1	2565200			15569	8667	8770	8771	19701;19702;19703	19702					0.1724684994474046
IPRLERILL	9	Unmodified	_IPRLERILL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.8718872070312	2	561.871508	1121.72846	0.18386	0.00010331	0.0274	1.5395E-05	0.21126	0.0001187	561.8714231909547	57.189	0.87734	57.17	56.78	57.657	-0.019077					70	31	3	0	0	0	0.0098873	2	13747	13747;13807		79.596	35.738	1	2286800			15570	8667	8770	8771	19704;19705	19704					0.1724684994474046
IPRLERIV	8	Unmodified	_IPRLERIV_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF;ENST00000473333.1_1_7:74159164-74160345:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2655944824219	2	498.321651	994.62875	0.29846	0.00014873	-0.54389	-0.00027103	-0.24544	-0.00012231	498.32144834308883	42.796	0.3344	42.796	42.595	42.93	0					24	11	3	0	0	0	0.34167	1	9370	9370		11.64	3.047	1	215080			15571	8667	8771	8772	19706	19706					0.1312203233079572
IPRLPERMTTL	11	Oxidation (M)	_IPRLPERM(Oxidation (M))TTL_		IPRLPERM(1)TTL		IPRLPERM(53)TTL	0	0	1		ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.255126953125	3	448.255228	1341.74386	0.075206	3.3712E-05	-0.21078	-9.4481E-05	-0.13557	-6.077E-05	448.2552167073775	41.344	0.91096	41.344	40.74	41.651	0					108	33	5	0	0	0	0.051754	2	8855	8855;8903		52.735	33.591	1	4720400			15572	7482	8772	8773	19707;19708	19707		828			0.08665348679619456
IPRLPERMTTL	11	Oxidation (M)	_IPRLPERM(Oxidation (M))TTL_		IPRLPERM(1)TTL		IPRLPERM(47)TTL	0	0	1		ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.255126953125	3	448.255228	1341.74386	0.12864	5.7664E-05	-0.31614	-0.00014171	-0.1875	-8.4048E-05	448.25512628310753	41.138	0.92066	41.228	40.691	41.611	0.090252					114	34	5	0	0	0	0.071108	2	8859	8808;8859		47.139	32.301	1	5269500			15573	7482	8772	8773	19709;19710	19710		828			0.08665348679619456
IPRLPERMTTL	11	Oxidation (M)	_IPRLPERM(Oxidation (M))TTL_		IPRLPERM(1)TTL		IPRLPERM(58)TTL	0	0	1		ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	ENSG00000184922|ENST00000331495|FMNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.255126953125	3	448.255228	1341.74386	0.070128	3.1435E-05	-0.26265	-0.00011774	-0.19253	-8.63E-05	448.2551382574236	41.033	0.93966	41.129	40.589	41.529	0.096626					113	34	5	0	0	0	0.032167	2	8821	8777;8821		58.398	43.56	1	5149900			15574	7482	8772	8773	19711;19712	19712		828			0.08665348679619456
IPRLQDRLLSL	11	Unmodified	_IPRLQDRLLSL_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.27581787109375	3	441.94175	1322.80342	-0.11744	-5.19E-05	-0.44561	-0.00019693	-0.56305	-0.00024883	442.275718557402	59.877	0.27403	59.877	59.675	59.949	0					20	9	3	0	0	0	0.2912	1	14622	14622		23.016	8.1777	1	410410			15575	6020	8773	8774	19713	19713					0.15492987685342996
IPRLQDRLLSL	11	Unmodified	_IPRLQDRLLSL_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.2761535644531	3	441.94175	1322.80342	-0.23678	-0.00010465	-0.031613	-1.3971E-05	-0.2684	-0.00011862	442.27605371742777	59.709	0.46825	59.804	59.55	60.019	0.095089					26	16	2	0	0	0	0.2912	1	14534	14534		23.016	8.1777	1	267560			15576	6020	8773	8774	19714	19714					0.15492987685342996
IPRLQDRLLSL	11	Unmodified	_IPRLQDRLLSL_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	441.94175	1322.80342	0.16291	7.1997E-05	-0.70719	-0.00031254	-0.54427	-0.00024054	441.941531081073	59.81	0.37621	59.798	59.621	59.997	-0.011486	-0.028147	-0.00052447	NaN	23.016	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223910			15577	6020	8773	8774							0.15492987685342996
IPRLQKIWKNY	11	Unmodified	_IPRLQKIWKNY_					0	0	0		ENSG00000073849|ENST00000169298|ST6GAL1	ENSG00000073849|ENST00000169298|ST6GAL1	ENSG00000073849|ENST00000169298|ST6GAL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.9587707519531	3	486.957511	1457.8507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.251	1	92.252	91.752	92.752	0.00046539								0	0	0	0.37548	1	24523	24523		2.6312	0.37851	1				15578	1007	8774	8775	19715	19715					0.14009266956327338
IPRLYWVP	8	Unmodified	_IPRLYWVP_					0	0	0		ENST00000324685.10_1_16:30786138-30786306:+|nuORF	ENST00000324685.10_1_16:30786138-30786306:+|nuORF	ENST00000324685.10_1_16:30786138-30786306:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.283447265625	2	522.30547	1042.59639	0.73669	0.00038478	0.44061	0.00023013	1.1773	0.00061491	522.3057222670319	54.397	0.49143	54.397	54.188	54.68	0					24	17	2	0	0	0	0.34147	1	13001	13001		6.3541	6.3541	1	191830			15579	9403	8775	8776	19716	19716					0.0767924492779457
IPRNLIGSEL	10	Unmodified	_IPRNLIGSEL_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN;nc|ENSG00000205978|Q9P2P1-2|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7845458984375	2	556.327131	1110.63971	0.41186	0.00022913	-1.334	-0.00074215	-0.92216	-0.00051302	556.3264198571593	53.234	0.6609	53.234	52.987	53.648	0					45	24	3	0	0	0	0.27529	1	12585	12585		23.79	2.2528	1	821120			15580	8310	8776	8777	19717	19717					0.08881389914427018
IPRNLIGSEL	10	Unmodified	_IPRNLIGSEL_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN;nc|ENSG00000205978|Q9P2P1-2|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7847290039062	2	556.327131	1110.63971	0.33782	0.00018794	-1.0905	-0.00060667	-0.75266	-0.00041872	556.3265181741467	53.411	0.78318	53.402	53.142	53.925	-0.0096054					49	29	3	0	0	0	0.25117	1	12581	12581		29.841	17.6	1	667100			15581	8310	8776	8777	19718	19718					0.08881389914427018
IPRNLIGSEL	10	Unmodified	_IPRNLIGSEL_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN;nc|ENSG00000205978|Q9P2P1-2|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	556.327131	1110.63971	0.46171	0.00025686	-1.4001	-0.00077892	-0.9384	-0.00052206	556.3263855756712	53.218	0.77806	53.274	53.043	53.821	0.056255	-0.029241	-0.00011996	NaN	29.841	45	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	771410			15582	8310	8776	8777							0.08881389914427018
IPRNPPPRL	9	Unmodified	_IPRNPPPRL_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000476609.1_1_2:102441885-102476398:+|nuORF;ENST00000572330.5_1_17:4736842-4793277:+|nuORF;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000141503|Q8N4C8-5|MINK1	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3062133789062	2	530.324725	1058.6349	0.17232	9.1385E-05	-0.76998	-0.00040834	-0.59767	-0.00031696	530.3240490497001	27.928	0.50628	27.928	27.615	28.121	0					28	17	2	0	0	0	0.25323	1	4736	4736		10.074	2.1638	1	76048			15583	949;4386	8777	8778	19719	19719					0.10792550562291581
IPRNPPPRL	9	Unmodified	_IPRNPPPRL_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000476609.1_1_2:102441885-102476398:+|nuORF;ENST00000572330.5_1_17:4736842-4793277:+|nuORF;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000141503|Q8N4C8-5|MINK1	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7437133789062	2	530.324725	1058.6349	0.057652	3.0574E-05	-0.48995	-0.00025983	-0.4323	-0.00022926	530.3241741469185	27.85	0.7973	27.834	27.47	28.267	-0.015581					39	27	2	0	0	0	0.24848	1	4737	4737		13.906	5.9959	1	73397			15584	949;4386	8777	8778	19720	19720					0.10792550562291581
IPRNPPPRL	9	Unmodified	_IPRNPPPRL_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000476609.1_1_2:102441885-102476398:+|nuORF;ENST00000572330.5_1_17:4736842-4793277:+|nuORF;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000141503|Q8N4C8-5|MINK1	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.74365234375	2	530.324725	1058.6349	0.070845	3.7571E-05	-0.54273	-0.00028782	-0.47188	-0.00025025	530.3243137184	27.757	0.51239	27.746	27.527	28.039	-0.01156					24	17	2	0	0	0	0.25323	1	4741	4741		10.074	2.1638	1	80143			15585	949;4386	8777	8778	19721	19721					0.10792550562291581
IPRNQLQSV	9	Unmodified	_IPRNQLQSV_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.8049926757812	2	527.803823	1053.59309	0.45181	0.00023847	0.58516	0.00030885	1.037	0.00054732	527.804083398282	31.723	0.16947	31.765	31.683	31.852	0.042364					9	5	2	0	0	0	0.15763	1	5975	5975		29.841	4.8496	1	239170			15586	3321	8778	8779	19722	19722					0.06843950083134587
IPRNQLQSV	9	Unmodified	_IPRNQLQSV_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	527.803823	1053.59309	0.51693	0.00027284	0.63553	0.00033544	1.1525	0.00060827	527.804167592407	31.744	0.24435	31.785	31.672	31.916	0.040991	0.0099866	2.3297E-05	NaN	29.841	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261290			15587	3321	8778	8779							0.06843950083134587
IPRPILVLL	9	Unmodified	_IPRPILVLL_					0	0	0		ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3602294921875	2	517.360245	1032.70594	0.1295	6.6996E-05	0.22536	0.00011659	0.35486	0.00018359	517.3604047842521	75.686	1.6176	75.686	75.339	76.957	0					163	58	5	0	0	0	0.015402	2	19418	19418;19464		71.134	22.788	1	6752500			15588	10757;12577	8779	8780	19723;19724	19723					0.1908925054710835
IPRPILVLL	9	Unmodified	_IPRPILVLL_					0	0	0		ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3601684570312	2	517.360245	1032.70594	0.27172	0.00014058	0.085331	4.4147E-05	0.35705	0.00018472	517.3603379784245	75.657	1.6841	75.709	75.323	77.007	0.052368					140	60	5	0	0	0	0.015402	2	19395	19395;19442		71.134	22.788	1	7979000			15589	10757;12577	8779	8780	19725;19726	19725					0.1908925054710835
IPRPILVLL	9	Unmodified	_IPRPILVLL_					0	0	0		ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.3605346679688	2	517.360245	1032.70594	0.30385	0.0001572	0.1521	7.869E-05	0.45595	0.00023589	517.3603114678589	75.709	1.8955	75.678	75.367	77.262	-0.031487					152	69	4	0	0	0	0.015402	2	19468	19424;19468		71.134	22.788	1	6547400			15590	10757;12577	8779	8780	19727;19728	19728					0.1908925054710835
IPRPLAYVF	9	Unmodified	_IPRPLAYVF_					0	0	0		ENSG00000270765|ENST00000604641|GAS2L2	ENSG00000270765|ENST00000604641|GAS2L2	ENSG00000270765|ENST00000604641|GAS2L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.295166015625	2	538.318577	1074.6226	0.61774	0.00033254	-0.72588	-0.00039076	-0.10815	-5.8218E-05	538.3183095071925	74.212	0.55611	74.212	74.098	74.654	0					21	18	2	0	0	0	0.24311	1	19109	19109		11.64	0	1	316750			15591	8695	8780	8781	19729	19729					0.08827514099266409
IPRPPGGVL	9	Unmodified	_IPRPPGGVL_					0	0	0		ENST00000490812.5_1_2:131128247-131129758:+|nuORF;nc|ENSG00000072135|Q99952-2|PTPN18;ENSG00000072135|ENST00000175756|PTPN18	ENST00000490812.5_1_2:131128247-131129758:+|nuORF	ENST00000490812.5_1_2:131128247-131129758:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.28204345703125	2	453.281995	904.549437	0.49119	0.00022265	-0.27888	-0.00012641	0.21231	9.6237E-05	453.28172815022293	45.837	0.87765	45.837	45.291	46.168	0					69	31	3	0	0	0	0.068501	1	10283	10283		46.021	3.9264	1	996420			15592	973	8781	8782	19730	19730					0.09334385376666887
IPRPPGGVL	9	Unmodified	_IPRPPGGVL_					0	0	0		ENST00000490812.5_1_2:131128247-131129758:+|nuORF;nc|ENSG00000072135|Q99952-2|PTPN18;ENSG00000072135|ENST00000175756|PTPN18	ENST00000490812.5_1_2:131128247-131129758:+|nuORF	ENST00000490812.5_1_2:131128247-131129758:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.28192138671875	2	453.281995	904.549437	0.16128	7.3106E-05	0.072317	3.278E-05	0.2336	0.00010589	453.28193362077633	45.732	1.1247	45.792	45.026	46.15	0.059837					78	39	3	0	0	0	0.062246	1	10222	10222		48.346	3.9388	1	970690			15593	973	8781	8782	19731	19731					0.09334385376666887
IPRPPPPPSV	10	Unmodified	_IPRPPPPPSV_					0	0	0			REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1	REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8318481445312	2	528.813659	1055.61277	0.47499	0.00025118	1.7104	0.00090446	2.1853	0.0011556	528.8143018896478	43.409	0.94844	43.409	43.116	44.065	0					49	34	2	0	0	0	0.33817	1	9653	9653		14.838	1.3304	1	253110	+		15594	17544	8782	8783	19732	19732					0.08718326093890028
IPRQLFKP	8	Unmodified	_IPRQLFKP_					0	0	0		ENSG00000127311|ENST00000247815|HELB	ENSG00000127311|ENST00000247815|HELB	ENSG00000127311|ENST00000247815|HELB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.8090515136719	2	499.810919	997.607286	0.21474	0.00010733	-1.3077	-0.00065358	-1.0929	-0.00054625	499.8087869712816	30.886	0.76676	30.914	30.584	31.351	0.027157					66	27	3	0	0	0	0.4419	1	5732	5732		8.5933	0	1	224320			15595	3311	8783	8784	19733	19733					0.10838647302068694
IPRQQNSSV	9	Unmodified	_IPRQQNSSV_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.77783203125	2	514.777805	1027.54106	0.29114	0.00014987	1.1034	0.00056802	1.3946	0.00071789	514.7780294912969	17.345	0.77852	17.345	17.151	17.93	0					63	26	4	0	0	0	0.07944	1	1623	1623		41.956	19.219	1	217460			15596	7169	8784	8785	19734	19734					0.028387866693719843
IPRQQNSSV	9	Unmodified	_IPRQQNSSV_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7778930664062	2	514.777805	1027.54106	0.050058	2.5769E-05	0.97926	0.0005041	1.0293	0.00052987	514.7781415533739	17.605	0.60898	17.487	17.231	17.84	-0.11739					53	20	3	0	0	0	0.026579	1	1667	1667		61.602	27.2	1	253800			15597	7169	8784	8785	19735	19735					0.028387866693719843
IPRQRGKRRRR	11	Unmodified	_IPRQRGKRRRR_					0	0	0			REV__ENST00000308664.10_1_12:110719006-110719138:+|nuORF	REV__ENST00000308664.10_1_12:110719006-110719138:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.650390625	3	493.650297	1477.92906	0.17029	8.4066E-05	0.22175	0.00010947	0.39205	0.00019353	493.6503936175192	102.91	0.34828	102.92	102.61	102.96	0.016685					93	48	2	0	0	0	0.48486	1	27343	27343		0.094841	0.011491	1	1281200	+		15598	19883	8785	8786	19736	19736					0.20921557104770727
IPRQRGKRRRR	11	Unmodified	_IPRQRGKRRRR_					0	0	0			REV__ENST00000308664.10_1_12:110719006-110719138:+|nuORF	REV__ENST00000308664.10_1_12:110719006-110719138:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.6510009765625	3	493.650297	1477.92906	0.29872	0.00014746	0.34611	0.00017086	0.64483	0.00031832	493.6504642742409	103.06	0.38036	103.05	102.72	103.1	-0.0011139					85	47	2	0	0	0	0.48486	1	27417	27417		0.094841	0.011491	1	3282200	+		15599	19883	8785	8786	19737	19737					0.20921557104770727
IPRQRGKRRRR	11	Unmodified	_IPRQRGKRRRR_					0	0	0			REV__ENST00000308664.10_1_12:110719006-110719138:+|nuORF	REV__ENST00000308664.10_1_12:110719006-110719138:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	493.650297	1477.92906	-0.014171	-6.9954E-06	0.39048	0.00019276	0.37631	0.00018577	493.98495643467515	102.92	0.21131	102.92	102.73	102.95	0	-0.044334	0.00017539	NaN	0.094841	60	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	835700	+		15600	19883	8785	8786							0.20921557104770727
IPRQRGKRRRR	11	Unmodified	_IPRQRGKRRRR_					0	0	0			REV__ENST00000308664.10_1_12:110719006-110719138:+|nuORF	REV__ENST00000308664.10_1_12:110719006-110719138:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	493.650297	1477.92906	0.17029	8.4066E-05	0.22175	0.00010947	0.39205	0.00019353	493.6503936175192	102.91	0.34828	102.92	102.61	102.96	0.016685	-0.042466	-7.4489E-05	NaN	0.094841	93	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1281200	+		15601	19883	8785	8786							0.20921557104770727
IPRRAHALM	9	Unmodified	_IPRRAHALM_					0	0	0			REV__ENST00000424556.2_1_11:1856509-1858658:+|nuORF	REV__ENST00000424556.2_1_11:1856509-1858658:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2820434570312	2	532.810928	1063.6073	0.5873	0.00031292	-1.9422	-0.0010348	-1.3549	-0.00072188	532.8105258513532	57.448	0.68811	57.448	57.165	57.854	0					39	24	2	0	0	0	0.23783	1	13954	13954		18.135	1.1927	1	842930	+		15602	16449	8786	8787	19738	19738					0.07804324030416865
IPRRPGALDGL	11	Unmodified	_IPRRPGALDGL_					0	0	0		ENSG00000161671|ENST00000334976|EMC10;nc|ENSG00000161671|Q5UCC4-2|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3771362304688	2	582.846022	1163.67749	0.24995	0.00014568	0.058974	3.4373E-05	0.30892	0.00018005	582.8460575729639	38.785	0.40518	38.878	38.622	39.027	0.09267					24	14	2	0	0	0	0.32757	1	8133	8133		12.873	2.0731	1	289060			15603	5524	8787	8788	19739	19739					0.10219900899892309
IPRRPGALDGL	11	Unmodified	_IPRRPGALDGL_					0	0	0		ENSG00000161671|ENST00000334976|EMC10;nc|ENSG00000161671|Q5UCC4-2|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3773803710938	2	582.846022	1163.67749	0.49058	0.00028593	-0.29952	-0.00017457	0.19106	0.00011136	582.8459323546457	38.746	0.50393	38.845	38.624	39.128	0.099407					35	17	3	0	0	0	0.32344	1	8098	8098		19.626	8.8264	1	274940			15604	5524	8787	8788	19740	19740					0.10219900899892309
IPRRQEHDISL	11	Unmodified	_IPRRQEHDISL_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2528991699219	3	455.252875	1362.7368	-0.050586	-2.3029E-05	-0.034689	-1.5792E-05	-0.085275	-3.8822E-05	455.25272204951835	27.391	0.97408	27.391	26.979	27.954	0					99	33	4	0	0	0	0.3013	2	4618	4618;4665		22.109	5.8343	1	1065500			15605	3229	8788	8789	19741;19742	19741					0.06993752123435115
IPRRQEHDISL	11	Unmodified	_IPRRQEHDISL_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2529602050781	3	455.252875	1362.7368	-0.059963	-2.7298E-05	-0.019261	-8.7685E-06	-0.079224	-3.6067E-05	455.25275691894603	27.355	0.93987	27.334	26.955	27.895	-0.021412					94	32	4	0	0	0	0.26738	2	4664	4620;4664		25.155	9.8813	1	1271000			15606	3229	8788	8789	19743;19744	19744					0.06993752123435115
IPRRTSASRAP	11	Unmodified	_IPRRTSASRAP_					0	0	0		ENST00000464112.5_1_6:35436764-35437267:+|nuORF	ENST00000464112.5_1_6:35436764-35437267:+|nuORF	ENST00000464112.5_1_6:35436764-35437267:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3699951171875	2	606.352003	1210.68945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.38	1	109.38	108.88	109.88	0								0	0	0	0.36839	1	28628	28628		4.1895	1.1943	1				15607	10781	8789	8790	19745	19745					0.09253517643082887
IPRSALNQPQK	11	Unmodified	_IPRSALNQPQK_					0	0	0		ENST00000278071.6_1_10:106072491-106072860:-|nuORF	ENST00000278071.6_1_10:106072491-106072860:-|nuORF	ENST00000278071.6_1_10:106072491-106072860:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.91033935546875	3	417.910449	1250.70952	-0.33166	-0.00013861	-0.014787	-6.1798E-06	-0.34645	-0.00014478	417.91047920193597	14.929	0.76881	14.929	14.729	15.498	0					78	26	5	0	0	0	0.43513	1	917	917		6.6235	1.2207	1	1278800			15608	9105	8790	8791	19746	19746					0.09419268583019402
IPRSERAPI	9	Unmodified	_IPRSERAPI_					0	0	0		ENST00000259523.10_1_8:128747712-128748060:+|nuORF	ENST00000259523.10_1_8:128747712-128748060:+|nuORF	ENST00000259523.10_1_8:128747712-128748060:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2685546875	2	519.806365	1037.59818	0.16907	8.7886E-05	-0.25382	-0.00013193	-0.084741	-4.4049E-05	519.8063684580306	25.206	0.76669	25.15	24.628	25.395	-0.055931					44	26	3	0	0	0	0.24913	1	3954	3954		12.532	1.7076	1	211430			15609	8953	8791	8792	19747	19747					0.08088253945743418
IPRSFMMEV	9	2 Oxidation (M)	_IPRSFM(Oxidation (M))M(Oxidation (M))EV_		IPRSFM(1)M(1)EV		IPRSFM(100)M(100)EV	0	0	2		ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;nc|ENSG00000122257|Q7Z6E9-4|RBBP6	ENSG00000122257|ENST00000319715|RBBP6	ENSG00000122257|ENST00000319715|RBBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2726440429688	2	571.272652	1140.53075	0.3545	0.00020252	-0.94523	-0.00053999	-0.59073	-0.00033747	571.2724604201344	40.367	1.2656	40.367	39.831	41.096	0					126	45	4	0	0	0	0.0028032	4	8635	8531;8587;8635;8685		103.82	78.424	1	991030			15610	3036	8792	8793	19748;19749;19750;19751	19750		380;381			-0.03389280371698078
IPRSFMMEV	9	2 Oxidation (M)	_IPRSFM(Oxidation (M))M(Oxidation (M))EV_		IPRSFM(1)M(1)EV		IPRSFM(87)M(87)EV	0	0	2		ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;nc|ENSG00000122257|Q7Z6E9-4|RBBP6	ENSG00000122257|ENST00000319715|RBBP6	ENSG00000122257|ENST00000319715|RBBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2728881835938	2	571.272652	1140.53075	0.56757	0.00032424	-1.1348	-0.00064829	-0.56724	-0.00032405	571.2724068245643	40.135	1.1883	40.228	39.69	40.879	0.09267					126	42	4	0	0	0	0.0048951	3	8569	8518;8569;8618		87.258	61.859	1	983160			15611	3036	8792	8793	19752;19753;19754	19753		380;381			-0.03389280371698078
IPRSFMMEV	9	2 Oxidation (M)	_IPRSFM(Oxidation (M))M(Oxidation (M))EV_		IPRSFM(1)M(1)EV		IPRSFM(69)M(69)EV	0	0	2		ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;nc|ENSG00000122257|Q7Z6E9-4|RBBP6	ENSG00000122257|ENST00000319715|RBBP6	ENSG00000122257|ENST00000319715|RBBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2728881835938	2	571.272652	1140.53075	0.35338	0.00020188	-1.0098	-0.00057685	-0.65639	-0.00037498	571.2725464676793	40.138	1.1006	40.237	39.65	40.75	0.099407					121	39	4	0	0	0	0.016571	3	8432	8432;8542;8614		69.338	45.318	1	886090			15612	3036	8792	8793	19755;19756;19757	19755		380;381			-0.03389280371698078
IPRSFRHLSF	10	Unmodified	_IPRSFRHLSF_					0	0	0		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.5717468261719	3	420.571768	1258.69348	-0.19512	-8.2061E-05	0.3171	0.00013336	0.12198	5.1303E-05	420.57189998950423	41.325	0.71487	41.325	40.96	41.675	0					90	26	5	0	0	0	0.083104	3	8896	8843;8896;8950		51.765	25.768	1	5960700			15613	7579	8793	8794	19758;19759;19760	19759					0.07447607136782608
IPRSFRHLSF	10	Unmodified	_IPRSFRHLSF_					0	0	0		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.5716857910156	3	420.571768	1258.69348	0.0828	3.4824E-05	-0.073534	-3.0926E-05	0.0092664	3.8972E-06	420.57175918206565	40.932	0.98391	41.024	40.556	41.54	0.09198					112	36	4	0	0	0	0.097738	4	8776	8731;8776;8825;8872		48.561	30.431	1	6320700			15614	7579	8793	8794	19761;19762;19763;19764	19762					0.07447607136782608
IPRSFRHLSF	10	Unmodified	_IPRSFRHLSF_					0	0	0		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.5716857910156	3	420.571768	1258.69348	-0.11643	-4.8968E-05	0.10349	4.3526E-05	-0.01294	-5.4423E-06	420.57181618691277	40.861	0.81419	40.96	40.666	41.48	0.099407					96	29	4	0	0	0	0.11425	4	8752	8707;8752;8801;8857		44.945	36.395	1	6258100			15615	7579	8793	8794	19765;19766;19767;19768	19766					0.07447607136782608
IPRSILMTTF	10	Oxidation (M)	_IPRSILM(Oxidation (M))TTF_		IPRSILM(1)TTF		IPRSILM(82)TTF	0	0	1		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8314208984375	2	597.831191	1193.64783	0.30962	0.0001851	0.0085833	5.1314E-06	0.3182	0.00019023	597.8312511192847	59.527	0.76462	59.527	59.133	59.897	0					84	26	5	0	0	0	0.010655	3	14524	14471;14524;14568		81.915	49.13	1	5854500			15616	259	8794	8795	19769;19770;19771	19770		14			0.058752008395231314
IPRSILMTTF	10	Oxidation (M)	_IPRSILM(Oxidation (M))TTF_		IPRSILM(1)TTF		IPRSILM(76)TTF	0	0	1		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.83154296875	2	597.831191	1193.64783	0.41689	0.00024923	-0.10349	-6.1869E-05	0.3134	0.00018736	597.8312234827822	59.384	0.77671	59.475	59.101	59.878	0.091301					84	26	5	0	0	0	0.016475	3	14412	14412;14459;14504		75.571	44.867	1	5592700			15617	259	8794	8795	19772;19773;19774	19772		14			0.058752008395231314
IPRSILMTTF	10	Oxidation (M)	_IPRSILM(Oxidation (M))TTF_		IPRSILM(1)TTF		IPRSILM(86)TTF	0	0	1		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8314208984375	2	597.831191	1193.64783	0.54438	0.00032544	-0.16213	-9.6925E-05	0.38225	0.00022852	597.8311295078075	59.522	0.83403	59.511	58.979	59.813	-0.011486					80	29	4	0	0	0	0.0071242	3	14498	14452;14498;14554		85.764	51.659	1	5656700			15618	259	8794	8795	19775;19776;19777	19776		14			0.058752008395231314
IPRSITVLV	9	Unmodified	_IPRSITVLV_					0	0	0		nc|ENSG00000166508|P33993-2|MCM7;ENSG00000166508|ENST00000303887|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF;nc|ENSG00000166508|P33993-3|MCM7	nc|ENSG00000166508|P33993-2|MCM7	nc|ENSG00000166508|P33993-2|MCM7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.323974609375	2	499.32386	996.633166	0.56533	0.00028228	-0.17054	-8.5156E-05	0.39479	0.00019713	499.32368257549376	56.952	0.90652	56.932	56.646	57.553	-0.019081					73	32	3	0	0	0	0.067563	1	13727	13727		66.457	20.757	1	2606400			15619	6088	8795	8796	19778	19778					0.13471496753686552
IPRSPFKVKVL	11	Unmodified	_IPRSPFKVKVL_					0	0	0		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.61138916015625	3	428.611452	1282.81253	0.058945	2.5264E-05	0.034774	1.4904E-05	0.093719	4.0169E-05	428.6113748630186	45.043	0.902	45.043	44.684	45.586	0					83	32	4	0	0	0	0.098551	2	10022	10022;10065		40.317	18.745	1	1188500			15620	3941	8796	8797	19779;19780	19779					0.18243381041634166
IPRSPFKVKVL	11	Unmodified	_IPRSPFKVKVL_					0	0	0		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.61138916015625	3	428.611452	1282.81253	0.017928	7.6841E-06	-0.066713	-2.8594E-05	-0.048785	-2.091E-05	428.6113725598018	44.901	0.7431	44.97	44.627	45.37	0.068569					66	26	3	0	0	0	0.14892	2	9967	9967;10016		35.793	16.545	1	1570100			15621	3941	8796	8797	19781;19782	19781					0.18243381041634166
IPRSPFKVKVL	11	Unmodified	_IPRSPFKVKVL_					0	0	0		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.6114196777344	3	428.611452	1282.81253	0.1129	4.8392E-05	-0.01832	-7.8524E-06	0.094583	4.054E-05	428.611359506295	44.916	0.88381	44.991	44.697	45.58	0.075047					83	32	4	0	0	0	0.073872	2	10009	9963;10009		46.34	24.541	1	1326400			15622	3941	8796	8797	19783;19784	19784					0.18243381041634166
IPRVQVAQI	9	Unmodified	_IPRVQVAQI_					0	0	0		nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.3187866210938	2	512.319109	1022.62366	0.58345	0.00029891	-0.65962	-0.00033794	-0.076165	-3.9021E-05	512.3186833099128	47.907	1.0871	47.907	47.549	48.636	0					92	38	3	0	0	0	0.0059482	3	10941	10890;10941;10990		85.642	39.621	1	9268200			15623	3823	8797	8798	19785;19786;19787	19786					0.11325728468182206
IPRVQVAQI	9	Unmodified	_IPRVQVAQI_					0	0	0		nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.3190307617188	2	512.319109	1022.62366	0.65563	0.00033589	-0.76823	-0.00039358	-0.1126	-5.7687E-05	512.3186166865053	47.866	1.0981	47.914	47.594	48.693	0.04752					95	40	3	0	0	0	0.0059482	3	10888	10888;10936;10987		85.642	47.668	1	7974100			15624	3823	8797	8798	19788;19789;19790	19788					0.11325728468182206
IPRVQVAQI	9	Unmodified	_IPRVQVAQI_					0	0	0		nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	nc|ENSG00000134882|Q8NBM4-3|UBAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.3186645507812	2	512.319109	1022.62366	0.44832	0.00022969	-0.62946	-0.00032249	-0.18114	-9.2801E-05	512.3186731466408	47.875	0.97617	47.918	47.611	48.588	0.04332					87	36	3	0	0	0	0.0037772	3	10926	10871;10926;10976		96.111	50.09	1	9137400			15625	3823	8797	8798	19791;19792;19793	19792					0.11325728468182206
IPRVVQEGDVL	11	Unmodified	_IPRVVQEGDVL_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.8508911132812	2	612.85097	1223.68739	0.22363	0.00013705	-2.5031	-0.001534	-2.2794	-0.0013969	612.8493663061166	51.917	0.5371	51.917	51.702	52.239	0					52	19	3	0	0	0	0.023517	1	12186	12186		60.899	40.485	1	765300			15626	3170	8798	8799	19794	19794					0.08449044114627213
IPRVVQEGDVL	11	Unmodified	_IPRVVQEGDVL_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.8495483398438	2	612.85097	1223.68739	0.29086	0.00017825	-2.2588	-0.0013843	-1.9679	-0.001206	612.8494242334422	51.892	0.60345	51.942	51.651	52.254	0.050575					51	21	3	0	0	0	0.10294	1	12158	12158		39.923	17.187	1	849020			15627	3170	8798	8799	19795	19795					0.08449044114627213
IPRVVQEGDVL	11	Unmodified	_IPRVVQEGDVL_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.8497924804688	2	612.85097	1223.68739	0.034914	2.1397E-05	-2.1143	-0.0012958	-2.0794	-0.0012744	612.8497581699771	52.025	0.59175	52.024	51.793	52.385	-0.00080872					50	21	3	0	0	0	0.067879	1	12197	12197		48.073	30.96	1	812820			15628	3170	8798	8799	19796	19796					0.08449044114627213
IPRYIISQL	9	Unmodified	_IPRYIISQL_					0	0	0		MAST4|p.S850Ffs*20|1|0.24|ENSG00000069020|chr5:67142153-67142154|-/CTTTAGACTGGAA|frameshift_variant;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	MAST4|p.S850Ffs*20|1|0.24|ENSG00000069020|chr5:67142153-67142154|-/CTTTAGACTGGAA|frameshift_variant	MAST4|p.S850Ffs*20|1|0.24|ENSG00000069020|chr5:67142153-67142154|-/CTTTAGACTGGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8341674804688	2	551.834591	1101.65463	0.020088	1.1085E-05	-0.53979	-0.00029788	-0.51971	-0.00028679	551.8342857180388	59.903	0.82036	59.903	59.621	60.441	0					74	29	4	0	0	0	0.0048951	2	14628	14628;14686		87.258	54.473	1	3404500			15629	898	8799	8800	19797;19798	19797					0.10786881782428281
IPRYIISQL	9	Unmodified	_IPRYIISQL_					0	0	0		MAST4|p.S850Ffs*20|1|0.24|ENSG00000069020|chr5:67142153-67142154|-/CTTTAGACTGGAA|frameshift_variant;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	MAST4|p.S850Ffs*20|1|0.24|ENSG00000069020|chr5:67142153-67142154|-/CTTTAGACTGGAA|frameshift_variant	MAST4|p.S850Ffs*20|1|0.24|ENSG00000069020|chr5:67142153-67142154|-/CTTTAGACTGGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8340454101562	2	551.834591	1101.65463	-0.06845	-3.7773E-05	-0.54362	-0.00029999	-0.61207	-0.00033776	551.8342713493342	59.792	0.81744	59.887	59.578	60.395	0.095093					74	29	4	0	0	0	0.0048951	3	14583	14531;14583;14636		87.258	47.309	1	3544300			15630	898	8799	8800	19799;19800;19801	19800					0.10786881782428281
IPRYIISQL	9	Unmodified	_IPRYIISQL_					0	0	0		MAST4|p.S850Ffs*20|1|0.24|ENSG00000069020|chr5:67142153-67142154|-/CTTTAGACTGGAA|frameshift_variant;nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	MAST4|p.S850Ffs*20|1|0.24|ENSG00000069020|chr5:67142153-67142154|-/CTTTAGACTGGAA|frameshift_variant	MAST4|p.S850Ffs*20|1|0.24|ENSG00000069020|chr5:67142153-67142154|-/CTTTAGACTGGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8342895507812	2	551.834591	1101.65463	0.27758	0.00015318	-0.7773	-0.00042894	-0.49972	-0.00027576	551.8341422093359	59.9	0.75702	59.888	59.621	60.378	-0.011486					78	26	4	0	0	0	0.0048951	2	14580	14580;14628		87.258	47.309	1	3437600			15631	898	8799	8800	19802;19803	19802					0.10786881782428281
IPSADRHKSKL	11	Unmodified	_IPSADRHKSKL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.91064453125	3	417.910449	1250.70952	-0.33166	-0.00013861	-0.014787	-6.1798E-06	-0.34645	-0.00014478	417.91047920193597	14.929	0.76881	14.929	14.729	15.498	0					78	26	5	0	0	0	0.19733	1	862	862		31.446	16.489	1	1278800			15632	3533	8800	8801	19804	19804					0.0941926858304214
IPSADRHKSKL	11	Unmodified	_IPSADRHKSKL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.362548828125	2	626.362036	1250.70952	0.074397	4.6599E-05	0.18117	0.00011348	0.25557	0.00016008	626.3621877508558	14.932	0.28569	14.932	14.759	15.044	0					19	9	3	0	0	0	0.30623	1	867	867		20.871	11.895	1	120000			15633	3533	8800	8801	19805	19805					0.0941926858304214
IPSADRHKSKL	11	Unmodified	_IPSADRHKSKL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.9106750488281	3	417.910449	1250.70952	-0.06461	-2.7001E-05	-0.36275	-0.0001516	-0.42736	-0.0001786	417.91036784729096	15.032	1.0216	14.922	14.618	15.64	-0.10982					89	35	4	0	0	0	0.32907	2	892	892;940		19.615	7.4406	1	1284500			15634	3533	8800	8801	19806;19807	19806					0.0941926858304214
IPSADRHKSKL	11	Unmodified	_IPSADRHKSKL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.36181640625	2	626.362036	1250.70952	-0.20588	-0.00012896	0.19056	0.00011936	-0.015321	-9.5968E-06	626.3621239174156	15.028	0.3314	14.919	14.789	15.121	-0.10981					18	11	2	0	0	0	0.43485	1	919	919		11.518	6.6209	1	116550			15635	3533	8800	8801	19808	19808					0.0941926858304214
IPSADRHKSKL	11	Unmodified	_IPSADRHKSKL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.91046142578125	3	417.910449	1250.70952	-0.14954	-6.2494E-05	-0.33912	-0.00014172	-0.48866	-0.00020422	417.9103574833201	15.108	1.3653	15.044	14.208	15.573	-0.064413					91	47	4	0	0	0	0.18539	1	916	916		32.518	20.887	1	1447200			15636	3533	8800	8801	19809	19809					0.0941926858304214
IPSADRHKSKL	11	Unmodified	_IPSADRHKSKL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	626.362036	1250.70952	-0.11881	-7.4417E-05	0.51646	0.00032349	0.39765	0.00024907	626.3623991202173	15.097	0.34446	15.033	14.871	15.216	-0.064413	0.071691	0.00024437	NaN	20.871	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123560			15637	3533	8800	8801							0.0941926858304214
IPSALINKTKY	11	Unmodified	_IPSALINKTKY_					0	0	0			REV__ENSG00000132915|ENST00000255266|PDE6A	REV__ENSG00000132915|ENST00000255266|PDE6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.3709716796875	2	624.371538	1246.72852	-0.020231	-1.2632E-05	1.5248	0.00095205	1.5046	0.00093941	624.3721950812269	98.273	0.2373	98.273	98.131	98.368	0					40	27	2	0	0	0	0.46475	1	26286	26286		2.7352	0	1	257370	+		15638	15595	8801	8802	19810	19810					0.11502805154077578
IPSALINKTKY	11	Unmodified	_IPSALINKTKY_					0	0	0			REV__ENSG00000132915|ENST00000255266|PDE6A	REV__ENSG00000132915|ENST00000255266|PDE6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.3720703125	2	624.371538	1246.72852	-0.13678	-8.5401E-05	1.3699	0.00085531	1.2331	0.00076991	624.3721804327952	98.187	0.34353	98.249	98.032	98.375	0.061516					55	39	2	0	0	0	0.47546	1	26272	26272		1.3295	0.80477	1	411790	+		15639	15595	8801	8802	19811	19811					0.11502805154077578
IPSALINKTKY	11	Unmodified	_IPSALINKTKY_					0	0	0			REV__ENSG00000132915|ENST00000255266|PDE6A	REV__ENSG00000132915|ENST00000255266|PDE6A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	624.371538	1246.72852	0.16573	0.00010347	0.91672	0.00057237	1.0824	0.00067585	624.3719809890532	98.314	0.38582	98.307	98.089	98.475	-0.0068283	0.030759	-0.00030148	NaN	2.7352	82	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	584610	+		15640	15595	8801	8802							0.11502805154077578
IPSAPGVPSGP	11	Unmodified	_IPSAPGVPSGP_					0	0	0			REV__ENSG00000167548|ENST00000301067|KMT2D	REV__ENSG00000167548|ENST00000301067|KMT2D	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.74981689453125	2	489.766374	977.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.542	1	14.476	13.976	14.976	-0.066068								0	0	0	0.34766	1	756	756		8.7454	0	1		+		15641	17391	8802	8803	19812	19812					0.028537675519146433
IPSDPLVSI	9	Unmodified	_IPSDPLVSI_					0	0	0		nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.77099609375	2	470.771126	939.527698	-0.020652	-9.7221E-06	-0.035208	-1.6575E-05	-0.055859	-2.6297E-05	470.77102421289254	69.85	0.64645	69.85	69.511	70.157	0					70	23	4	0	0	0	0.17787	1	17694	17694		26.884	6.43	1	481670			15642	2832	8803	8804	19813	19813					0.05551535837423671
IPSDPLVSI	9	Unmodified	_IPSDPLVSI_					0	0	0		nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.77081298828125	2	470.771126	939.527698	0.17549	8.2616E-05	-0.15676	-7.3797E-05	0.018733	8.8188E-06	470.77091676319463	69.827	0.64848	69.805	69.539	70.188	-0.022087					71	23	4	0	0	0	0.21303	1	17704	17704		21.747	4.8044	1	382870			15643	2832	8803	8804	19814	19814					0.05551535837423671
IPSDQQVIN	9	Unmodified	_IPSDQQVIN_					0	0	0		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7543640136719	2	507.266739	1012.51892	0.38747	0.00019655	3.8774	0.0019669	4.2649	0.0021634	507.26865999572465	71.101	0.38494	71.076	70.718	71.103	-0.024864					15	13	2	0	0	0	0.20651	1	18005	18005		26.884	0	1	203940			15644	3799	8804	8805	19815	19815					0.013165622009637445
IPSEGPRKLK	10	Unmodified	_IPSEGPRKLK_					0	0	0			REV__ENST00000457013.6_1_19:53456123-53466148:-|nuORF	REV__ENST00000457013.6_1_19:53456123-53466148:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.322509765625	2	562.842948	1123.67134	0.075566	4.2532E-05	3.3057	0.0018606	3.3813	0.0019031	562.844544977082	27.475	0.37819	27.475	27.294	27.673	0					19	12	2	0	0	0	0.30978	1	4673	4673		19.362	4.5237	1	68342	+		15645	21177	8805	8806	19816	19816					0.11445382668375714
IPSIGWGAVI	10	Unmodified	_IPSIGWGAVI_					0	0	0		ENST00000373573.7_1_X:71792621-71792867:-|nuORF	ENST00000373573.7_1_X:71792621-71792867:-|nuORF	ENST00000373573.7_1_X:71792621-71792867:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7951965332031	2	506.794935	1011.57532	0.29666	0.00015035	0.28026	0.00014203	0.57692	0.00029238	506.7949364824223	70.257	1.1662	70.323	69.856	71.022	0.066048					121	41	4	0	0	0	0.24715	1	17879	17879		26.884	8.7487	1	1848800			15646	9870	8806	8807	19817	19817					0.06999234828265344
IPSIGWGAVI	10	Unmodified	_IPSIGWGAVI_					0	0	0		ENST00000373573.7_1_X:71792621-71792867:-|nuORF	ENST00000373573.7_1_X:71792621-71792867:-|nuORF	ENST00000373573.7_1_X:71792621-71792867:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.794921875	2	506.794935	1011.57532	0.33564	0.0001701	0.30084	0.00015246	0.63648	0.00032257	506.79491684052283	70.338	1.1698	70.313	69.801	70.971	-0.024864					105	41	4	0	0	0	0.14015	1	17892	17892		39.957	7.8404	1	1831700			15647	9870	8806	8807	19818	19818					0.06999234828265344
IPSIRNGIL	9	Unmodified	_IPSIRNGIL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.805908203125	2	491.805834	981.597115	0.43792	0.00021537	-0.24837	-0.00012215	0.18956	9.3225E-05	491.80561894437915	52.996	1.3639	52.996	52.686	54.05	0					112	50	4	0	0	0	0.0037449	2	12483	12438;12483		96.367	32.406	1	7556800			15648	3159	8807	8808	19819;19820	19820					0.10558039576847023
IPSIRNGIL	9	Unmodified	_IPSIRNGIL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.80596923828125	2	491.805834	981.597115	0.6332	0.00031141	-0.37844	-0.00018612	0.25476	0.00012529	491.8055531726279	52.954	1.4694	53.01	52.558	54.028	0.056255					127	54	4	0	0	0	0.0098873	1	12467	12467		79.596	15.636	1	7436600			15649	3159	8807	8808	19821	19821					0.10558039576847023
IPSIRNGIL	9	Unmodified	_IPSIRNGIL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.8058166503906	2	491.805834	981.597115	0.39132	0.00019245	-0.36032	-0.00017721	0.030997	1.5244E-05	491.8055840612504	53.111	1.0658	53.101	52.679	53.745	-0.0096092					104	39	4	0	0	0	0.0037449	3	12513	12513;12614;12623		96.367	32.406	1	7241000			15650	3159	8807	8808	19822;19823;19824	19822					0.10558039576847023
IPSLRFLSL	9	Unmodified	_IPSLRFLSL_					0	0	0		ENST00000584580.1_1_17:45912634-45914483:+|nuORF;ENSG00000141294|ENST00000269025|LRRC46	ENST00000584580.1_1_17:45912634-45914483:+|nuORF	ENST00000584580.1_1_17:45912634-45914483:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3036499023438	2	523.32386	1044.63317	0.47928	0.00025082	-0.89927	-0.00047061	-0.41999	-0.00021979	523.3234380939613	75.378	0.37357	75.43	75.244	75.618	0.052368					17	13	2	0	0	0	0.24787	1	19372	19372		10.8	2.0541	1	96145			15651	4364	8808	8809	19825	19825					0.11263496753713298
IPSMVIMQK	9	Unmodified	_IPSMVIMQK_					0	0	0		ENST00000495810.1_1_7:26236236-26236504:-|nuORF	ENST00000495810.1_1_7:26236236-26236504:-|nuORF	ENST00000495810.1_1_7:26236236-26236504:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.8032836914062	2	523.790481	1045.56641	0.40779	0.0002136	-0.88273	-0.00046236	-0.47494	-0.00024877	523.7898514839517	24.777	2.6044	24.777	23.11	25.714	0					115	89	2	0	0	0	0.31417	1	4037	4037		6.7232	0.51738	1	103530			15652	11223	8809	8810	19826	19826					0.04544801875954363
IPSPKLQVP	9	Unmodified	_IPSPKLQVP_					0	0	0		nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10;ENSG00000144290|ENST00000446997|SLC4A10;ENST00000446228.5_1_2:162758621-162834241:+|nuORF	nc|ENSG00000144290|Q6U841-2|SLC4A10	nc|ENSG00000144290|Q6U841-2|SLC4A10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.278076171875	2	489.80276	977.590967	0.25663	0.0001257	-1.3551	-0.00066375	-1.0985	-0.00053805	489.80208932556104	51.971	0.34447	51.971	51.836	52.18	0					20	12	2	0	0	0	0.2451	1	12222	12222		10.824	2.2306	1	176180			15653	4574	8810	8811	19827	19827					0.10127521345316381
IPSPKLQVP	9	Unmodified	_IPSPKLQVP_					0	0	0		nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10;ENSG00000144290|ENST00000446997|SLC4A10;ENST00000446228.5_1_2:162758621-162834241:+|nuORF	nc|ENSG00000144290|Q6U841-2|SLC4A10	nc|ENSG00000144290|Q6U841-2|SLC4A10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	489.80276	977.590967	0.34929	0.00017108	-0.33825	-0.00016567	0.011045	5.4099E-06	489.8027065238612	51.932	0.40834	51.983	51.846	52.254	0.050575	-0.022222	0.00062176	NaN	15.847	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283940			15654	4574	8810	8811							0.10127521345316381
IPSPKLQVP	9	Unmodified	_IPSPKLQVP_					0	0	0		nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10;ENSG00000144290|ENST00000446997|SLC4A10;ENST00000446228.5_1_2:162758621-162834241:+|nuORF	nc|ENSG00000144290|Q6U841-2|SLC4A10	nc|ENSG00000144290|Q6U841-2|SLC4A10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	489.80276	977.590967	0.10808	5.2938E-05	-0.047229	-2.3133E-05	0.060851	2.9805E-05	489.8031181740652	52.062	0.53625	52.061	51.848	52.385	-0.00081253	0.056199	0.00090684	NaN	15.847	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247790			15655	4574	8810	8811							0.10127521345316381
IPSQISYPASQ	11	Unmodified	_IPSQISYPASQ_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.3522338867188	2	595.806228	1189.5979	0.27629	0.00016462	0.90319	0.00053812	1.1795	0.00070274	595.8066501629878	49.316	0.55701	49.348	49.045	49.602	0.032043					26	19	2	0	0	0	0.32855	1	11400	11400		10.8	2.644	1	182800			15656	2591	8811	8812	19828	19828					0.010687894352258809
IPSRLSTVF	9	Unmodified	_IPSRLSTVF_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8077392578125	2	510.297842	1018.58113	0.15524	7.9218E-05	0.84045	0.00042888	0.99569	0.0005081	510.2985196692834	53.705	0.36336	53.762	53.56	53.923	0.056259					20	12	2	0	0	0	0.20167	1	12654	12654		17.113	0	1	208060	+		15657	13406	8812	8813	19829	19829					0.07258333339939327
IPSRVALIL	9	Unmodified	_IPSRVALIL_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.3263854980469	2	491.326402	980.638252	-0.20972	-0.00010304	0.25805	0.00012679	0.048337	2.3749E-05	491.3264165900822	60.118	0.93295	60.213	59.961	60.894	0.095093					66	33	3	0	0	0	0.17555	1	14750	14750		27.223	27.223	1	2100300			15658	2568	8813	8814	19830	19830					0.1471580061631812
IPSSQLAAK	9	Unmodified	_IPSSQLAAK_					0	0	0		ENSG00000068831|ENST00000394432|RASGRP2;nc|ENSG00000068831|Q7LDG7-4|RASGRP2;nc|ENSG00000068831|Q7LDG7-2|RASGRP2;nc|ENSG00000068831|Q7LDG7-3|RASGRP2	ENSG00000068831|ENST00000394432|RASGRP2	ENSG00000068831|ENST00000394432|RASGRP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7561950683594	2	457.768917	913.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.156	1	25.156	24.656	25.656	0								0	0	0	0.22065	1	3967	3967		15.847	1.0089	1				15659	890	8814	8815	19831	19831					0.06306071414519465
IPSSQSSLY	9	Unmodified	_IPSSQSSLY_					0	0	0			REV__ZGRF1|p.D357Afs*7|1|0.03|ENSG00000138658|chr4:112618972-112618973|-/TCAATGAAAGCAGTAG|frameshift_variant	REV__ZGRF1|p.D357Afs*7|1|0.03|ENSG00000138658|chr4:112618972-112618973|-/TCAATGAAAGCAGTAG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.636474609375	2	491.248015	980.481476	0.46567	0.00022876	0.64242	0.00031559	1.1081	0.00054435	491.248025222667	57.054	0.4748	57.054	56.799	57.273	0					25	17	3	0	0	0	0.19839	1	13737	13737		10.824	0	1	170130	+		15660	15941	8815	8816	19832	19832					-0.009545290646542526
IPSSTKLL	8	Unmodified	_IPSSTKLL_					0	0	0			REV__ENST00000565971.5_1_16:28837630-28838212:+|nuORF	REV__ENST00000565971.5_1_16:28837630-28838212:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.7664489746094	2	429.768386	857.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.126	1	74.179	73.679	74.679	0.052361								0	0	0	0.36961	1	18972	18972		5.7604	0	1		+		15661	22364	8816	8817	19833	19833					0.08775857045600333
IPSTKSALGAR	11	Unmodified	_IPSTKSALGAR_					0	0	0		ENST00000604929.1_1_9:140135770-140136775:+|nuORF	ENST00000604929.1_1_9:140135770-140136775:+|nuORF	ENST00000604929.1_1_9:140135770-140136775:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2802124023438	2	550.824755	1099.63496	0.67024	0.00036919	-0.046543	-2.5637E-05	0.6237	0.00034355	550.8247555259387	40.19	0.41194	40.283	40.09	40.502	0.09267					25	14	2	0	0	0	0.329	1	8606	8606		2.9952	0	1	241520			15662	12285	8817	8818	19834	19834					0.08912505771650103
IPSTLIQR	8	Unmodified	_IPSTLIQR_					0	0	0		ENSG00000134545|ENST00000359151|KLRC1	ENSG00000134545|ENST00000359151|KLRC1	ENSG00000134545|ENST00000359151|KLRC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.8005676269531	2	464.284734	926.554916	0.058396	2.7112E-05	0.15083	7.0027E-05	0.20922	9.714E-05	464.2846505392792	35.612	0.66438	35.698	35.476	36.14	0.08625					48	23	3	0	0	0	0.34092	1	7265	7265		4.756	0	1	1499800			15663	3795	8818	8819	19835	19835					0.08870064168468161
IPSVVISRKQ	10	Unmodified	_IPSVVISRKQ_					0	0	0			REV__nc|ENSG00000140945|P55290-3|CDH13	REV__nc|ENSG00000140945|P55290-3|CDH13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3225708007812	2	563.850773	1125.68699	0.10167	5.7326E-05	-1.5395	-0.00086806	-1.4379	-0.00081073	563.8497842591428	27.376	0.32252	27.376	27.266	27.589	0					17	10	2	0	0	0	0.31629	1	4627	4627		6.2058	1.3088	1	119570	+		15664	16059	8819	8820	19836	19836					0.12917669185435443
IPTADMPKSP	10	Unmodified	_IPTADMPKSP_					0	0	0		RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant;ENSG00000081019|ENST00000261441|RSBN1;ENST00000476412.5_1_1:114308604-114340019:-|nuORF	RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant	RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3159790039062	2	528.773342	1055.53213	0.78441	0.00041477	0.96116	0.00050823	1.7456	0.00092301	528.7737166899827	37.017	0.53337	37.017	36.7	37.233	0					32	18	2	0	0	0	0.27979	1	7498	7498		11.495	3.3392	1	459020			15665	1174	8820	8821	19837	19837					0.00658676988678053
IPTADMPKSP	10	Unmodified	_IPTADMPKSP_					0	0	0		RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant;ENSG00000081019|ENST00000261441|RSBN1;ENST00000476412.5_1_1:114308604-114340019:-|nuORF	RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant	RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.773342	1055.53213	0.81631	0.00043164	0.99151	0.00052428	1.8078	0.00095593	528.7740163307948	36.846	0.50999	36.939	36.687	37.197	0.093018	-0.02267	-9.0488E-05	NaN	11.495	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	474750			15666	1174	8820	8821							0.00658676988678053
IPTAENCVGCK	11	Unmodified	_IPTAENCVGCK_					0	0	0			REV__ENSG00000165782|ENST00000250489|PIP4P1	REV__ENSG00000165782|ENST00000250489|PIP4P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.7676391601562	2	567.767734	1133.52091	0.15161	8.608E-05	-0.21039	-0.00011945	-0.058775	-3.3371E-05	567.7677179966888	25.374	0.53273	25.374	25.12	25.652	0					40	17	3	0	0	0	0.46819	1	4074	4074		2.2828	0.22302	1	282340	+		15667	17265	8821	8822	19838	19838					-0.04050468377113248
IPTAENCVGCK	11	Unmodified	_IPTAENCVGCK_					0	0	0			REV__ENSG00000165782|ENST00000250489|PIP4P1	REV__ENSG00000165782|ENST00000250489|PIP4P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.7680053710938	2	567.767734	1133.52091	0.1165	6.6144E-05	-0.16227	-9.2129E-05	-0.045766	-2.5985E-05	567.7677055674035	25.401	0.45838	25.345	25.134	25.592	-0.055931					37	15	3	0	0	0	0.40332	1	4057	4057		10.8	0	1	272360	+		15668	17265	8821	8822	19839	19839					-0.04050468377113248
IPTAIDFTL	9	Unmodified	_IPTAIDFTL_					0	0	0		nc|ENSG00000242520|P43359|MAGEA5P	nc|ENSG00000242520|P43359|MAGEA5P	nc|ENSG00000242520|P43359|MAGEA5P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2762756347656	2	495.778951	989.543348	0.41908	0.00020777	-0.81482	-0.00040397	-0.39573	-0.0001962	495.7788366916165	66.681	1.1695	66.765	66.05	67.219	0.083832					101	41	5	0	0	0	0.062246	1	16649	16649		48.346	19.859	1	787880			15669	12966	8822	8823	19840	19840					0.04815822354487409
IPTAQWKAF	9	Unmodified	_IPTAQWKAF_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000488791.1_1_21:34904635-34906961:-|nuORF;ENST00000497313.5_1_21:34903034-34906961:-|nuORF;ENST00000476524.1_1_21:34903719-34911621:-|nuORF;nc|ENSG00000159131|P22102-2|GART	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3050537109375	2	531.292559	1060.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.697	1	84.684	84.184	85.184	-0.01284								0	0	0	0.22933	1	22203	22203		13.042	1.4022	1				15670	5387	8823	8824	19841	19841					0.04270350685487756
IPTDKLLVI	9	Unmodified	_IPTDKLLVI_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3265075683594	2	506.326068	1010.63758	0.33292	0.00016856	-0.45533	-0.00023055	-0.12242	-6.1983E-05	506.3262182601263	63.094	1.2486	63.094	62.611	63.859	0					157	45	5	0	0	0	0.0073901	4	15624	15576;15624;15672;15721		83.429	25.957	1	24517000			15671	5048	8824	8825	19842;19843;19844;19845	19843					0.13268961176606808
IPTDKLLVI	9	Unmodified	_IPTDKLLVI_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.32684326171875	2	506.326068	1010.63758	0.35998	0.00018227	-0.22531	-0.00011408	0.13466	6.8183E-05	506.3262402412009	62.985	1.1142	63.081	62.736	63.851	0.095722					134	39	5	0	0	0	0.0041491	4	15631	15541;15582;15631;15685		93.166	35.444	1	24414000			15672	5048	8824	8825	19846;19847;19848;19849	19848					0.13268961176606808
IPTDKLLVI	9	Unmodified	_IPTDKLLVI_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.32635498046875	2	506.326068	1010.63758	0.28863	0.00014614	-0.43714	-0.00022134	-0.14851	-7.5196E-05	506.32610855120845	63.076	1.1769	63.068	62.675	63.852	-0.0085526					143	42	5	0	0	0	0.0041491	4	15607	15563;15607;15656;15700		93.166	35.695	1	24632000			15673	5048	8824	8825	19850;19851;19852;19853	19851					0.13268961176606808
IPTEVTLR	8	Unmodified	_IPTEVTLR_					0	0	0		ENST00000550184.5_1_12:56552185-56552566:+|nuORF	ENST00000550184.5_1_12:56552185-56552566:+|nuORF	ENST00000550184.5_1_12:56552185-56552566:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2634582519531	2	464.776742	927.538931	-0.062045	-2.8837E-05	0.99765	0.00046369	0.93561	0.00043485	464.7772390486353	19.343	1.2068	19.227	18.919	20.126	-0.11592					61	41	2	0	0	0	0.44569	1	2165	2165		7.2892	0.56607	1	74404			15674	11794	8825	8826	19854	19854					0.07226357931574512
IPTKKRLQK	9	Unmodified	_IPTKKRLQK_					0	0	0		ENST00000482499.1_1_3:28358339-28361117:+|nuORF;ENST00000477739.1_1_3:28360970-28361117:+|nuORF;ENSG00000187118|ENST00000466830|CMC1	ENST00000482499.1_1_3:28358339-28361117:+|nuORF	ENST00000482499.1_1_3:28358339-28361117:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3699951171875	2	556.369133	1110.72371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.059	1	88.059	87.559	88.559	0								0	0	0	0.24311	1	23245	23245		8.5933	3.3626	1				15675	7665	8826	8827	19855	19855					0.17277965801986284
IPTLHPQPIH	10	Unmodified	_IPTLHPQPIH_					0	0	0			REV__ENSG00000186566|ENST00000591680|GPATCH8	REV__ENSG00000186566|ENST00000591680|GPATCH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.319091796875	2	576.82984	1151.64513	0.50854	0.00029334	0.71262	0.00041106	1.2212	0.0007044	576.8300045862089	45.185	0.391	45.253	45.006	45.397	0.068573					30	13	3	0	0	0	0.31358	1	10033	10033		13.906	0.86358	1	832960	+		15676	18453	8827	8828	19856	19856					0.07537113496891834
IPTRLFASL	9	Unmodified	_IPTRLFASL_					0	0	0			REV__ENST00000392325.8_1_17:80573596-80573788:-|nuORF	REV__ENST00000392325.8_1_17:80573596-80573788:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7878112792969	2	509.30821	1016.60187	0.53872	0.00027438	-0.21869	-0.00011138	0.32003	0.000163	509.30805199638655	53.771	0.58454	53.771	53.441	54.026	0					41	21	3	0	0	0	0.18943	1	12776	12776		30.225	6.2042	1	740600	+		15677	20592	8828	8829	19857	19857					0.09422923719614573
IPTSARSML	9	Oxidation (M)	_IPTSARSM(Oxidation (M))L_		IPTSARSM(1)L		IPTSARSM(90)L	0	0	1		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2656555175781	2	496.265684	990.516816	0.54747	0.00027169	-0.85551	-0.00042456	-0.30804	-0.00015287	496.2653189356	29.771	1.0073	29.771	29.492	30.499	0					83	35	4	0	0	0	0.0045319	1	5391	5391		90.135	17.167	1	1647600			15678	4533	8829	8830	19858	19858		570			0.021178101915097614
IPTSARSML	9	Oxidation (M)	_IPTSARSM(Oxidation (M))L_		IPTSARSM(1)L		IPTSARSM(90)L	0	0	1		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2654113769531	2	496.265684	990.516816	0.44824	0.00022245	-0.73576	-0.00036513	-0.28752	-0.00014269	496.26533431698317	29.74	1.1478	29.752	29.389	30.537	0.012266					83	39	4	0	0	0	0.0045319	2	5335	5335;5378		90.135	26.174	1	1600700			15679	4533	8829	8830	19859;19860	19859		570			0.021178101915097614
IPTSARSML	9	Oxidation (M)	_IPTSARSM(Oxidation (M))L_		IPTSARSM(1)L		IPTSARSM(94)L	0	0	1		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2655334472656	2	496.265684	990.516816	0.11088	5.5024E-05	-0.44102	-0.00021886	-0.33014	-0.00016384	496.26550109957685	29.773	0.98007	29.787	29.454	30.434	0.013475					85	33	4	0	0	0	0.0040516	2	5347	5347;5398		93.938	17.113	1	1624700			15680	4533	8829	8830	19861;19862	19861		570			0.021178101915097614
IPTSGGVLVI	10	Unmodified	_IPTSGGVLVI_					0	0	0			REV__HSPA8|p.R342P|1|0.14|ENSG00000109971|chr11:123059568-123059568|C/G|missense_variant	REV__HSPA8|p.R342P|1|0.14|ENSG00000109971|chr11:123059568-123059568|C/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2947998046875	2	478.294768	954.574983	0.84711	0.00040517	-0.78203	-0.00037404	0.065086	3.113E-05	478.29427369270604	50.542	0.68571	50.587	50.242	50.928	0.044891					49	24	3	0	0	0	0.080806	1	11718	11718		52.268	0.85311	1	864150	+		15681	22765	8830	8831	19863	19863					0.09587815108409359
IPTSRRACR	9	Unmodified	_IPTSRRACR_					0	0	0		ENSG00000162641|ENST00000370001|AKNAD1;nc|ENSG00000162641|Q5T1N1-3|AKNAD1;nc|ENSG00000162641|Q5T1N1-4|AKNAD1;ENST00000461774.5_1_1:109365950-109373230:-|nuORF	ENSG00000162641|ENST00000370001|AKNAD1	ENSG00000162641|ENST00000370001|AKNAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.279052734375	2	530.295642	1058.57673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.672	1	62.664	62.164	63.164	-0.0085526								0	0	0	0.23091	1	15466	15466		12.532	1.7076	1				15682	5592	8831	8832	19864	19864					0.04978545645394661
IPVAEFKQF	9	Unmodified	_IPVAEFKQF_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8185424804688	2	539.800217	1077.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.575	1	75.575	75.075	76.075	0								0	0	0	0.23091	1	19424	19424		12.532	0	1				15683	6503	8832	8833	19865	19865					0.05019217482708882
IPVDYYGKL	9	Unmodified	_IPVDYYGKL_					0	0	0			REV__ENSG00000062822|ENST00000440232|POLD1	REV__ENSG00000062822|ENST00000440232|POLD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.8090209960938	2	534.292225	1066.5699	0.623	0.00033286	-2.8718	-0.0015344	-2.2488	-0.0012015	534.2905418832084	49.533	0.40741	49.533	49.267	49.675	0					22	14	2	0	0	0	0.21303	1	11397	11397		21.747	0.15649	1	246310	+		15684	13636	8833	8834	19866	19866					0.039275112458199146
IPVEALGQLL	10	Unmodified	_IPVEALGQLL_					0	0	0			REV__nc|ENSG00000144290|Q6U841-4|SLC4A10	REV__nc|ENSG00000144290|Q6U841-4|SLC4A10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8212280273438	2	526.82115	1051.62775	0.32663	0.00017207	0.47165	0.00024847	0.79827	0.00042055	526.8214514775206	80.476	0.56712	80.541	80.264	80.831	0.065094					46	21	3	0	0	0	0.29092	1	20926	20926		21.537	3.3906	1	455670	+		15685	16226	8834	8835	19867	19867					0.10399773171252491
IPVEFKLVI	9	Unmodified	_IPVEFKLVI_					0	0	0		ENST00000469641.5_1_19:19756233-19756668:-|nuORF;nc|ENSG00000105726|Q9HD20-3|ATP13A1;nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1	ENST00000469641.5_1_19:19756233-19756668:-|nuORF	ENST00000469641.5_1_19:19756233-19756668:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3364868164062	2	529.336436	1056.65832	0.38064	0.00020149	-0.073099	-3.8694E-05	0.30754	0.00016279	529.3362496298857	74.449	0.815	74.501	74.236	75.051	0.052361					56	28	3	0	0	0	0.017549	1	19099	19099		67.838	27.39	1	1623100			15686	2018	8835	8836	19868	19868					0.13225551556274695
IPVGQIVTI	9	Unmodified	_IPVGQIVTI_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2972412109375	2	470.29731	938.580068	-0.094438	-4.4414E-05	0.26132	0.0001229	0.16688	7.8483E-05	470.2972985195592	69.372	0.95608	69.372	69.067	70.023	0					65	34	3	0	0	0	0.012929	1	17527	17527		74.929	28.908	1	579820			15687	8145	8836	8837	19869	19869					0.10832118971052296
IPVGQIVTI	9	Unmodified	_IPVGQIVTI_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2972106933594	2	470.29731	938.580068	0.074382	3.4982E-05	0.088443	4.1594E-05	0.16283	7.6576E-05	470.29723834926494	69.289	0.97792	69.355	69.123	70.101	0.06604					64	34	3	0	0	0	0.012929	1	17501	17501		74.929	33.089	1	627530			15688	8145	8836	8837	19870	19870					0.10832118971052296
IPVGQIVTI	9	Unmodified	_IPVGQIVTI_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2973937988281	2	470.29731	938.580068	0.11838	5.5675E-05	0.32425	0.00015249	0.44263	0.00020817	470.2972360592112	69.416	0.92575	69.394	69.092	70.018	-0.022087					73	33	4	0	0	0	0.006189	1	17516	17516		85.272	35.339	1	636500			15689	8145	8836	8837	19871	19871					0.10832118971052296
IPVHLPNI	8	Unmodified	_IPVHLPNI_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7766418457031	2	451.776545	901.538538	0.22183	0.00010022	-0.20323	-9.1816E-05	0.018593	8.3997E-06	451.7764106113509	58.199	1.3666	58.199	57.525	58.891	0					100	47	3	0	0	0	0.022392	3	14125	14075;14125;14178		98.807	39.012	1	1205700			15690	455;3253	8837	8838	19872;19873;19874	19873					0.08382983002377387
IPVHLPNI	8	Unmodified	_IPVHLPNI_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.77655029296875	2	451.776545	901.538538	0.20595	9.3042E-05	-0.20624	-9.3173E-05	-0.00028931	-1.307E-07	451.77640015712166	58.073	1.2155	58.158	57.518	58.734	0.085621					98	43	3	0	0	0	0.028313	3	14062	14016;14062;14109		90.836	47.868	1	1092600			15691	455;3253	8837	8838	19875;19876;19877	19876					0.08382983002377387
IPVHLPNI	8	Unmodified	_IPVHLPNI_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7763977050781	2	451.776545	901.538538	0.43587	0.00019691	-0.44908	-0.00020288	-0.013211	-5.9684E-06	451.77630148787574	58.215	1.071	58.198	57.582	58.653	-0.0172					84	39	3	0	0	0	0.028313	3	14112	14056;14112;14162		90.836	38.143	1	1097100			15692	455;3253	8837	8838	19878;19879;19880	19879					0.08382983002377387
IPVINRQRKD	10	Unmodified	_IPVINRQRKD_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7;nc|ENSG00000083223|Q5VYS8-5|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8693237304688	2	619.870028	1237.7255	0.12236	7.5846E-05	-0.35072	-0.0002174	-0.22836	-0.00014155	619.8691099845951	93.934	1.0034	93.934	93.572	94.575	0					131	82	2	0	0	0	0.40888	1	25057	25057		1.8442	0.19162	1	117470			15693	1217	8838	8839	19881	19881					0.11614974819917734
IPVINRQRKD	10	Unmodified	_IPVINRQRKD_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7;nc|ENSG00000083223|Q5VYS8-5|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8693237304688	2	619.870028	1237.7255	0.051888	3.2164E-05	0.26033	0.00016137	0.31222	0.00019354	619.8694063718847	93.874	0.35543	93.961	93.749	94.104	0.08667					38	27	2	0	0	0	0.39536	1	25043	25043		4.3292	0.73274	1	154910			15694	1217	8838	8839	19882	19882					0.11614974819917734
IPVKKGEGAEL	11	Unmodified	_IPVKKGEGAEL_					0	0	0		ENSG00000163453|ENST00000295666|IGFBP7;ENST00000512512.3_1_4:57897485-57931766:-|nuORF	ENSG00000163453|ENST00000295666|IGFBP7	ENSG00000163453|ENST00000295666|IGFBP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.834716796875	2	570.834788	1139.65502	0.13538	7.7281E-05	0.1837	0.00010486	0.31909	0.00018215	570.8348835808214	25.382	0.5003	25.382	25.182	25.683	0					23	16	2	0	0	0	0.35571	1	4047	4047		17.049	6.2491	1	186680			15695	5680	8839	8840	19883	19883					0.09078256711609356
IPVLVTGITV	10	Unmodified	_IPVLVTGITV_					0	0	0			REV__ENSG00000073150|ENST00000395842|PANX2	REV__ENSG00000073150|ENST00000395842|PANX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.805419921875	2	506.326068	1010.63758	0.35717	0.00018085	-1.1093	-0.00056169	-0.75218	-0.00038085	506.32541618297546	64.473	2.1297	64.463	64.152	66.282	-0.0095367					111	77	2	0	0	0	0.30079	1	16131	16131		10.074	0	1	239630	+		15696	13773	8840	8841	19884	19884					0.1326896117659544
IPVNGPRL	8	Unmodified	_IPVNGPRL_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.2662658691406	2	433.266345	864.518136	-0.45725	-0.00019811	-0.19295	-8.3598E-05	-0.6502	-0.00028171	433.2664039854988	39.236	0.87235	39.236	38.931	39.803	0					73	31	4	0	0	0	0.082568	1	8261	8261		63.563	13.894	1	1082000			15697	5595	8841	8842	19885	19885					0.08045812342561476
IPVNGPRL	8	Unmodified	_IPVNGPRL_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.57159423828125	2	433.266345	864.518136	-0.20172	-8.74E-05	-0.24728	-0.00010714	-0.44901	-0.00019454	433.2663250502243	39.145	0.86111	39.238	38.916	39.777	0.09267					70	30	4	0	0	0	0.3366	1	8291	8291		18.135	0	1	1067000			15698	5595	8841	8842	19886	19886					0.08045812342561476
IPVNGPRL	8	Unmodified	_IPVNGPRL_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.2660217285156	2	433.266345	864.518136	0.033573	1.4546E-05	-0.054011	-2.3401E-05	-0.020438	-8.8552E-06	433.2662187613307	39.128	0.72701	39.228	38.923	39.65	0.099407					55	25	3	0	0	0	0.065797	1	8187	8187		70.716	21.047	1	1222900			15699	5595	8841	8842	19887	19887					0.08045812342561476
IPVNVPEAQE	10	Unmodified	_IPVNVPEAQE_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.8035278320312	2	548.287671	1094.56079	0.47264	0.00025914	-1.7905	-0.00098168	-1.3178	-0.00072254	548.2853138758542	30.547	0.47031	30.547	30.282	30.753	0					25	16	3	0	0	0	0.31847	1	5649	5649		6.7232	0.51738	1	57084			15700	3985	8842	8843	19888	19888					0.017291178894765835
IPVNVPEAQE	10	Unmodified	_IPVNVPEAQE_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.287671	1094.56079	0.58078	0.00031843	-0.62387	-0.00034206	-0.043096	-2.3629E-05	548.2869566317042	30.45	0.39163	30.478	30.274	30.665	0.027946	-0.034691	0.00047542	NaN	6.7232	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67985			15701	3985	8842	8843							0.017291178894765835
IPVRALNNL	9	Unmodified	_IPVRALNNL_					0	0	0		nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6;ENST00000506931.1_1_1:202245458-202249981:+|nuORF;ENST00000308543.3_1_1:202245458-202272411:+|nuORF	nc|ENSG00000133067|Q9HBX8-2|LGR6	nc|ENSG00000133067|Q9HBX8-2|LGR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8214111328125	2	505.311284	1008.60801	0.47279	0.00023891	-1.4006	-0.00070774	-0.92782	-0.00046884	505.3107670116096	29.78	0.42412	29.78	29.521	29.945	0					28	14	3	0	0	0	0.25066	1	5299	5299		7.2892	0	1	126650			15702	3691	8843	8844	19889	19889					0.1040544195111579
IPVSGRVGDN	10	Unmodified	_IPVSGRVGDN_					0	0	0		ENST00000343376.8_1_19:10421250-10426607:-|nuORF;nc|ENSG00000267673|Q6P4F2-2|FDX2;ENSG00000267673|ENST00000393708|FDX2	ENST00000343376.8_1_19:10421250-10426607:-|nuORF	ENST00000343376.8_1_19:10421250-10426607:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7927551269531	2	507.272355	1012.53016	0.22322	0.00011323	-0.35578	-0.00018048	-0.13256	-6.7242E-05	507.27213242806243	24.843	0.40369	24.787	24.514	24.918	-0.055931					25	13	2	0	0	0	0.31691	1	3893	3893		9.3831	1.473	1	78944			15703	9544	8844	8845	19890	19890					0.024393842950871658
IPVSGRVGDN	10	Unmodified	_IPVSGRVGDN_					0	0	0		ENST00000343376.8_1_19:10421250-10426607:-|nuORF;nc|ENSG00000267673|Q6P4F2-2|FDX2;ENSG00000267673|ENST00000393708|FDX2	ENST00000343376.8_1_19:10421250-10426607:-|nuORF	ENST00000343376.8_1_19:10421250-10426607:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.79278564453125	2	507.272355	1012.53016	0.033134	1.6808E-05	-0.71432	-0.00036235	-0.68119	-0.00034555	507.2719971945103	24.701	0.67384	24.669	24.373	25.047	-0.031408					34	22	2	0	0	0	0.31691	1	3868	3868		9.3831	1.473	1	104890			15704	9544	8844	8845	19891	19891					0.024393842950871658
IPVSINPAP	9	Unmodified	_IPVSINPAP_					0	0	0			REV__ENSG00000178015|ENST00000380007|GPR150	REV__ENSG00000178015|ENST00000380007|GPR150	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2653503417969	2	454.26601	906.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.317	1	67.317	66.817	67.817	0								0	0	0	0.24311	1	16897	16897		8.5933	0	1		+		15705	18010	8845	8846	19892	19892					0.060469729028341135
IPVSKPLSL	9	Unmodified	_IPVSKPLSL_					0	0	0		ENSG00000123405|ENST00000435572|NFE2	ENSG00000123405|ENST00000435572|NFE2	ENSG00000123405|ENST00000435572|NFE2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.2926025390625	2	477.305136	952.595718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.116	1	48.163	47.663	48.663	0.047523								0	0	0	0.18053	1	10982	10982		27.629	0.74515	1				15706	3103	8846	8847	19893	19893					0.11752405488095974
IPWANLRAAD	10	Unmodified	_IPWANLRAAD_					0	0	0		ENSG00000173572|ENST00000342929|NLRP13	ENSG00000173572|ENST00000342929|NLRP13	ENSG00000173572|ENST00000342929|NLRP13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3224487304688	2	563.803823	1125.59309	0.20813	0.00011735	1.0357	0.00058392	1.2438	0.00070127	563.8046905316379	27.022	0.36542	27.022	26.841	27.207	0					19	12	2	0	0	0	0.31358	1	4583	4583		13.906	0	1	56799			15707	6729	8847	8848	19894	19894					0.035319500831292316
IPWFIKTAF	9	Unmodified	_IPWFIKTAF_					0	0	0		nc|ENSG00000188467|Q71RS6-2|SLC24A5;ENSG00000188467|ENST00000341459|SLC24A5	nc|ENSG00000188467|Q71RS6-2|SLC24A5	nc|ENSG00000188467|Q71RS6-2|SLC24A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3434448242188	2	561.820953	1121.62735	0.3927	0.00022062	3.6196	0.0020336	4.0123	0.0022542	561.8234010636476	82.782	0.24844	82.762	82.569	82.818	-0.020584					17	9	2	0	0	0	0.2451	1	21621	21621		10.824	0	1	78008			15708	7751	8848	8849	19895	19895					0.07140398242040646
IPWKNSYMN	9	Unmodified	_IPWKNSYMN_					0	0	0		ENST00000515403.5_2_5:175602049-175603287:-|nuORF;ENST00000508056.5_2_5:175600468-175603287:-|nuORF	ENST00000515403.5_2_5:175602049-175603287:-|nuORF	ENST00000515403.5_2_5:175602049-175603287:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.251220703125	2	576.778959	1151.54336	0.2502	0.00014431	-1.4467	-0.00083444	-1.1965	-0.00069012	576.7784384046785	26.571	0.37411	26.532	26.29	26.664	-0.038671					15	12	2	0	0	0	0.26068	1	4430	4430		3.2813	0	1	68306			15709	11346	8849	8850	19896	19896					-0.02634500917179139
IPWPGTLAI	9	Unmodified	_IPWPGTLAI_					0	0	0		ENST00000527401.5_1_11:45957138-45987102:-|nuORF;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A;nc|ENSG00000135365|Q96BD5-2|PHF21A	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.26116943359375	2	484.284203	966.553853	0.45748	0.00022155	2.3205	0.0011238	2.778	0.0013453	484.28539621950375	84.284	0.36353	84.361	84.174	84.537	0.077095					23	14	2	0	0	0	0.25066	1	22106	22106		11.64	3.047	1	119730			15710	3867	8850	8851	19897	19897					0.06923849799557047
IPWPGTLAI	9	Unmodified	_IPWPGTLAI_					0	0	0		ENST00000527401.5_1_11:45957138-45987102:-|nuORF;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A;nc|ENSG00000135365|Q96BD5-2|PHF21A	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	484.284203	966.553853	0.4667	0.00022602	1.6901	0.0008185	2.1568	0.0010445	484.28499938720194	84.345	0.47653	84.345	84.186	84.663	0	-0.0082709	-0.00028324	NaN	11.64	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109540			15711	3867	8850	8851							0.06923849799557047
IPYALRVEL	9	Unmodified	_IPYALRVEL_					0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.3216552734375	2	537.321317	1072.62808	0.73034	0.00039243	-0.22295	-0.0001198	0.50739	0.00027263	537.3211946039697	64.19	1.0369	64.19	63.797	64.834	0					88	37	4	0	0	0	0.015924	2	15929	15929;15978		70.332	26.474	1	5244900			15712	6556	8851	8852	19898;19899	19898					0.09467192891065679
IPYALRVEL	9	Unmodified	_IPYALRVEL_					0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.3216552734375	2	537.321317	1072.62808	0.5272	0.00028328	-0.060722	-3.2627E-05	0.46648	0.00025065	537.3212750902533	64.052	1.7578	64.145	63.765	65.523	0.09288					122	64	4	0	0	0	0.048637	1	15932	15932		53.404	24.322	1	4885100			15713	6556	8851	8852	19900	19900					0.09467192891065679
IPYALRVEL	9	Unmodified	_IPYALRVEL_					0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.3216552734375	2	537.321317	1072.62808	0.7199	0.00038682	-0.23879	-0.00012831	0.4811	0.00025851	537.3211925040413	64.161	0.93027	64.151	63.822	64.752	-0.0095291					94	33	5	0	0	0	0.0098873	2	15920	15920;15969		79.596	27.328	1	5074400			15714	6556	8851	8852	19901;19902	19901					0.09467192891065679
IPYARDAVI	9	Unmodified	_IPYARDAVI_					0	0	0		ENST00000487841.5_1_6:166733707-166736391:-|nuORF;ENSG00000198818|ENST00000361731|SFT2D1	ENST00000487841.5_1_6:166733707-166736391:-|nuORF	ENST00000487841.5_1_6:166733707-166736391:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2895812988281	2	509.290017	1016.56548	0.26502	0.00013497	-0.32456	-0.00016529	-0.059535	-3.0321E-05	509.2896990080586	46.593	0.60645	46.593	46.298	46.904	0					56	21	4	0	0	0	0.069258	2	10505	10505;10556		45.74	12.954	1	1292200			15715	8133	8852	8853	19903;19904	19903					0.05786046822890967
IPYARDAVI	9	Unmodified	_IPYARDAVI_					0	0	0		ENST00000487841.5_1_6:166733707-166736391:-|nuORF;ENSG00000198818|ENST00000361731|SFT2D1	ENST00000487841.5_1_6:166733707-166736391:-|nuORF	ENST00000487841.5_1_6:166733707-166736391:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2899169921875	2	509.290017	1016.56548	0.41228	0.00020997	-0.28235	-0.0001438	0.12993	6.6171E-05	509.2898318258004	46.521	0.91851	46.573	46.3	47.219	0.052574					63	33	3	0	0	0	0.026579	2	10476	10476;10521		61.602	17.744	1	1370400			15716	8133	8852	8853	19905;19906	19905					0.05786046822890967
IPYARDAVI	9	Unmodified	_IPYARDAVI_					0	0	0		ENST00000487841.5_1_6:166733707-166736391:-|nuORF;ENSG00000198818|ENST00000361731|SFT2D1	ENST00000487841.5_1_6:166733707-166736391:-|nuORF	ENST00000487841.5_1_6:166733707-166736391:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.2898864746094	2	509.290017	1016.56548	0.13292	6.7696E-05	-0.090403	-4.6041E-05	0.04252	2.1655E-05	509.2898759758482	46.572	0.55337	46.626	46.355	46.908	0.054375					49	19	3	0	0	0	0.1426	1	10513	10513		32.037	5.7693	1	1286500			15717	8133	8852	8853	19907	19907					0.05786046822890967
IPYARDAVI	9	Unmodified	_IPYARDAVI_					0	0	0		ENST00000487841.5_1_6:166733707-166736391:-|nuORF;ENSG00000198818|ENST00000361731|SFT2D1	ENST00000487841.5_1_6:166733707-166736391:-|nuORF	ENST00000487841.5_1_6:166733707-166736391:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	509.290017	1016.56548	0.13292	6.7696E-05	-0.090403	-4.6041E-05	0.04252	2.1655E-05	509.2898759758482	46.572	0.55337	46.626	46.355	46.908	0.054375	0.028627	0.00014285	NaN	61.602	49	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1286500			15718	8133	8852	8853							0.05786046822890967
IPYDWEIL	8	Unmodified	_IPYDWEIL_					0	0	0		HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|123|3|sense;nc|ENSG816|P62685|ERVK-8_gag;nc|ENSG846|Q9YNA8|ERVK-19_gag;nc|ENSG841|P62683|ERVK-21_gag;nc|ENSG838|P63145|ERVK-24_gag;nc|ENSG827|Q7LDI9|ERVK-6_gag;nc|ENSG820|P63130|ERVK-7_gag;nc|ENSG810|P63126|ERVK-9_gag;nc|ENSG800|P62684|HERVK_113_gag;HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|126|3|sense;nc|ENSG809|P63128|ERVK-9_pol;nc|ENSG856|P87889|ERVK-10_gag	HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|123|3|sense	HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|123|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3074340820312	2	524.771126	1047.5277	0.69675	0.00036563	2.2882	0.0012008	2.985	0.0015664	524.7718289643004	84.405	0.52946	84.482	84.247	84.776	0.077095					32	20	3	0	0	0	0.34218	1	22203	22203		9.3474	0	1	219070			15719	12406	8853	8854	19908	19908					0.005835358374270072
IPYEGFASL	9	Unmodified	_IPYEGFASL_					0	0	0		ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7555236816406	2	498.755475	995.496398	0.39596	0.00019749	0.50388	0.00025131	0.89984	0.0004488	498.75558407479843	70.832	0.64509	70.832	70.512	71.157	0					60	22	4	0	0	0	0.019896	3	18003	17953;18003;18068		64.236	30.134	1	585800			15720	4148	8854	8855	19909;19910;19911	19910					-0.001530371966509847
IPYEGFASL	9	Unmodified	_IPYEGFASL_					0	0	0		ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7555847167969	2	498.755475	995.496398	0.37896	0.00018901	0.21548	0.00010747	0.59445	0.00029648	498.75548964372626	70.829	0.66403	70.89	70.546	71.21	0.060776					53	23	3	0	0	0	0.037693	2	17983	17940;17983		57.471	28.985	1	766000			15721	4148	8854	8855	19912;19913	19913					-0.001530371966509847
IPYEGFASL	9	Unmodified	_IPYEGFASL_					0	0	0		ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.755615234375	2	498.755475	995.496398	0.43861	0.00021876	0.26423	0.00013179	0.70284	0.00035055	498.7554909308592	70.968	0.71706	70.943	70.521	71.238	-0.024872					56	25	3	0	0	0	0.019896	2	17978	17978;18027		64.236	30.134	1	661180			15722	4148	8854	8855	19914;19915	19914					-0.001530371966509847
IPYEITLL	8	Unmodified	_IPYEITLL_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000451871.1_1_13:42499863-42500601:+|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2632141113281	2	481.283869	960.553185	0.22367	0.00010765	0.29727	0.00014307	0.52093	0.00025072	481.28399040651516	82.03	0.52045	82.03	81.741	82.262	0					40	18	3	0	0	0	0.32435	1	21423	21423		23.148	5.0134	1	433640			15723	814	8855	8856	19916	19916					0.07133010359848413
IPYFTTSGI	9	Unmodified	_IPYFTTSGI_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.3138732910156	2	499.7633	997.512048	0.39318	0.0001965	-0.57665	-0.00028819	-0.18346	-9.1689E-05	499.7625301801727	70.457	0.35629	70.457	70.183	70.54	0					16	12	2	0	0	0	0.1524	1	17867	17867		39.957	19.504	1	133860			15724	993	8856	8857	19917	19917					0.013192493203860067
IPYGMRFI	8	Oxidation (M)	_IPYGM(Oxidation (M))RFI_		IPYGM(1)RFI		IPYGM(94)RFI	0	0	1		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.76788330078125	2	506.767863	1011.52117	0.32892	0.00016668	-0.25514	-0.0001293	0.07378	3.7389E-05	506.7676931091822	49.865	1.0287	49.865	49.516	50.544	0					122	37	4	0	0	0	0.026049	3	11533	11533;11575;11622		93.883	37.342	1	8241100			15725	4321	8857	8858	19918;19919;19920	19918		547			0.01587319405064136
IPYGMRFI	8	Oxidation (M)	_IPYGM(Oxidation (M))RFI_		IPYGM(1)RFI		IPYGM(82)RFI	0	0	1		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7679748535156	2	506.767863	1011.52117	0.41955	0.00021261	-0.37354	-0.0001893	0.046007	2.3315E-05	506.76768519696367	49.844	1.0881	49.889	49.54	50.628	0.044891					133	40	6	0	0	0	0.042326	1	11524	11524		81.864	34.943	1	9025400			15726	4321	8857	8858	19921	19921		547			0.01587319405064136
IPYGMRFI	8	Oxidation (M)	_IPYGM(Oxidation (M))RFI_		IPYGM(1)RFI		IPYGM(94)RFI	0	0	1		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.76788330078125	2	506.767863	1011.52117	0.4358	0.00022085	-0.31907	-0.00016169	0.11673	5.9156E-05	506.76765514259904	49.846	1.0937	49.867	49.511	50.604	0.020691					132	40	4	0	0	0	0.051678	1	11526	11526		93.883	37.342	1	8380000			15727	4321	8857	8858	19922	19922		547			0.01587319405064136
IPYGNLLI	8	Unmodified	_IPYGNLLI_					0	0	0		ENST00000257287.4_1_4:56899213-56899264:+|nuORF	ENST00000257287.4_1_4:56899213-56899264:+|nuORF	ENST00000257287.4_1_4:56899213-56899264:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7705383300781	2	451.770929	901.527304	0.15248	6.8887E-05	-0.80948	-0.0003657	-0.657	-0.00029681	451.7705105209226	75.697	0.78677	75.75	75.401	76.188	0.052361					39	28	2	0	0	0	0.33916	1	19482	19482		26.341	5.4701	1	253890			15728	8936	8858	8859	19923	19923					0.07260160908253965
IPYGNLLI	8	Unmodified	_IPYGNLLI_					0	0	0		ENST00000257287.4_1_4:56899213-56899264:+|nuORF	ENST00000257287.4_1_4:56899213-56899264:+|nuORF	ENST00000257287.4_1_4:56899213-56899264:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7707214355469	2	451.770929	901.527304	0.23182	0.00010473	-0.90261	-0.00040777	-0.67079	-0.00030304	451.7705007538264	75.701	0.74612	75.669	75.391	76.137	-0.031479					40	26	2	0	0	0	0.2705	1	19523	19523		34.187	6.0141	1	283640			15729	8936	8858	8859	19924	19924					0.07260160908253965
IPYHIVNI	8	Unmodified	_IPYHIVNI_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7819519042969	2	484.781828	967.549102	0.40177	0.00019477	-0.12367	-5.9954E-05	0.2781	0.00013482	484.7817002955551	55.163	0.98299	55.163	54.837	55.82	0					58	35	2	0	0	0	0.016422	2	13154	13102;13154		106.85	62.438	1	3728100			15730	552	8859	8860	19925;19926	19926					0.06402965656809556
IPYHIVNI	8	Unmodified	_IPYHIVNI_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7817687988281	2	484.781828	967.549102	0.49667	0.00024078	-0.16615	-8.0545E-05	0.33052	0.00016023	484.7816771904001	55.064	0.85647	55.13	54.865	55.722	0.065582					57	31	2	0	0	0	0.016422	2	13087	13087;13134		106.85	62.438	1	3945400			15731	552	8859	8860	19927;19928	19927					0.06402965656809556
IPYHIVNI	8	Unmodified	_IPYHIVNI_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7819519042969	2	484.781828	967.549102	0.47479	0.00023017	-0.19063	-9.2416E-05	0.28416	0.00013776	484.7817100166546	55.198	0.93083	55.179	54.793	55.723	-0.019081					62	34	2	0	0	0	0.0083969	3	13163	13122;13163;13217		120.86	70.002	1	3585000			15732	552	8859	8860	19929;19930;19931	19930					0.06402965656809556
IPYHIVNIV	9	Unmodified	_IPYHIVNIV_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2947387695312	2	534.316035	1066.61752	0.79382	0.00042415	-0.37622	-0.00020102	0.4176	0.00022313	534.8176985894753	78.701	0.1097	78.701	78.615	78.725	0					5	3	2	0	0	0	0.25526	1	20381	20381		7.9102	0	1	58547			15733	552	8860	8861	19932	19932					0.08687210236666942
IPYHIVNIV	9	Unmodified	_IPYHIVNIV_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.3171997070312	2	534.316035	1066.61752	0.65833	0.00035176	0.92407	0.00049375	1.5824	0.0008455	534.3166724634262	60.485	1.589	60.473	60.108	61.697	-0.011486					191	58	5	0	0	0	6.8028E-05	6	14823	14732;14780;14823;14866;14914;15142		146.01	93.739	1	77794000			15734	552	8860	8861	19933;19934;19935;19936;19937;19938	19935					0.08687210236666942
IPYHIVNIV	9	Unmodified	_IPYHIVNIV_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7716064453125	2	534.316035	1066.61752	0.51155	0.00027333	-0.18141	-9.6928E-05	0.33014	0.0001764	534.3156775569607	64.709	1.4094	64.7	63.794	65.203	-0.0095367					72	51	2	0	0	0	0.1659	1	16113	16113		15.847	0	1	240820			15735	552	8860	8861	19939	19939					0.08687210236666942
IPYHIVNIV	9	Unmodified	_IPYHIVNIV_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	534.316035	1066.61752	0.65271	0.00034875	0.98273	0.00052509	1.6354	0.00087384	534.3166885453431	60.506	1.5775	60.506	60.15	61.727	0	0.026376	-5.1709E-05	NaN	146.01	181	58	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84025000			15736	552	8860	8861							0.08687210236666942
IPYHIVNIV	9	Unmodified	_IPYHIVNIV_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	534.316035	1066.61752	0.83777	0.00044764	-1.0872	-0.00058089	-0.24939	-0.00013325	534.3148351599457	78.756	0.11374	78.726	78.63	78.744	-0.030434	0.012595	-0.00033682	NaN	7.9102	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50849			15737	552	8860	8861							0.08687210236666942
IPYHSEVPVSL	11	Unmodified	_IPYHSEVPVSL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.8324584960938	2	620.832246	1239.64994	0.361	0.00022412	0.058278	3.6181E-05	0.41928	0.0002603	620.832210066924	55.21	0.99003	55.21	54.917	55.907	0					122	35	5	0	0	0	1.2284E-08	4	13168	13107;13122;13168;13218		140.63	54.992	1	9684600			15738	2631	8861	8862	19940;19941;19942;19943	19942					0.039699528490018565
IPYHSEVPVSL	11	Unmodified	_IPYHSEVPVSL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.8323364257812	2	620.832246	1239.64994	0.33701	0.00020923	0.13193	8.1908E-05	0.46894	0.00029113	620.8322563382461	55.137	0.98741	55.208	54.971	55.958	0.070885					126	36	5	0	0	0	1.0468E-12	4	13153	13100;13153;13201;13257		165.72	69.609	1	9128200			15739	2631	8861	8862	19944;19945;19946;19947	19945					0.039699528490018565
IPYHSEVPVSL	11	Unmodified	_IPYHSEVPVSL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.8323364257812	2	620.832246	1239.64994	0.33119	0.00020561	0.095855	5.951E-05	0.42704	0.00026512	620.8322259026338	55.252	1.1827	55.233	54.976	56.159	-0.019077					121	43	4	0	0	0	1.2284E-08	4	13179	13132;13179;13226;13276		140.63	54.992	1	8491200			15740	2631	8861	8862	19948;19949;19950;19951	19949					0.039699528490018565
IPYIPTLI	8	Unmodified	_IPYIPTLI_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2889404296875	2	465.288954	928.563355	0.17602	8.19E-05	0.088502	4.1179E-05	0.26452	0.00012308	465.28885583062174	86.285	1.347	86.285	85.931	87.278	0					118	53	4	0	0	0	0.10409	4	22655	22655;22699;22747;22799		59.795	34.187	1	1714600			15741	3141	8862	8863	19952;19953;19954;19955	19952					0.09621618085100181
IPYIPTLI	8	Unmodified	_IPYIPTLI_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2889404296875	2	465.288954	928.563355	0.10727	4.991E-05	0.055454	2.5802E-05	0.16272	7.5712E-05	465.28887079256475	86.162	1.2999	86.246	85.888	87.188	0.084251					106	51	3	0	0	0	0.065483	4	22657	22618;22657;22703;22751		70.865	42.968	1	2273600			15742	3141	8862	8863	19956;19957;19958;19959	19957					0.09621618085100181
IPYIPTLI	8	Unmodified	_IPYIPTLI_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.28887939453125	2	465.288954	928.563355	0.3658	0.0001702	-0.15791	-7.3474E-05	0.20789	9.673E-05	465.28876937362725	86.241	1.1774	86.232	85.918	87.096	-0.0090027					108	45	4	0	0	0	0.10409	4	22678	22635;22678;22725;22778		59.795	34.187	1	1863600			15743	3141	8862	8863	19960;19961;19962;19963	19961					0.09621618085100181
IPYITNVL	8	Unmodified	_IPYITNVL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.77618408203125	2	466.776211	931.537869	-0.24373	-0.00011377	0.29252	0.00013654	0.048789	2.2774E-05	466.7762721910262	75.968	1.6564	75.968	75.012	76.668	0					139	59	4	0	0	0	0.064917	3	19528	19484;19528;19573		71.134	22.788	1	2454400			15744	4369	8863	8864	19964;19965;19966	19965					0.06936143562666075
IPYITNVL	8	Unmodified	_IPYITNVL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7761535644531	2	466.776211	931.537869	-0.026126	-1.2195E-05	0.090279	4.214E-05	0.064154	2.9945E-05	466.7761787715835	75.903	1.1287	75.956	75.537	76.665	0.053413					101	40	4	0	0	0	0.072895	3	19509	19463;19509;19558		67.344	13.768	1	2569900			15745	4369	8863	8864	19967;19968;19969	19968					0.06936143562666075
IPYITNVL	8	Unmodified	_IPYITNVL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7761535644531	2	466.776211	931.537869	0.18841	8.7947E-05	-0.081226	-3.7915E-05	0.10719	5.0032E-05	466.77606765581953	76.013	1.5931	75.981	75.184	76.777	-0.031479					121	58	4	0	0	0	0.042854	3	19536	19490;19536;19588		81.613	24.142	1	2648000			15746	4369	8863	8864	19970;19971;19972	19971					0.06936143562666075
IPYLVVKV	8	Unmodified	_IPYLVVKV_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.8048095703125	2	465.804771	929.59499	-0.17451	-8.1287E-05	0.55367	0.0002579	0.37916	0.00017661	465.80487635074746	61.498	1.0336	61.498	61.207	62.24	0					92	38	4	0	0	0	0.026049	2	15134	15082;15134		93.883	34.088	1	3402000			15747	6847	8864	8865	19973;19974	19974					0.1273761083904219
IPYLVVKV	8	Unmodified	_IPYLVVKV_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.8047790527344	2	465.804771	929.59499	-0.30716	-0.00014308	0.6147	0.00028633	0.30753	0.00014325	465.80492075983733	61.369	1.0331	61.466	61.221	62.254	0.096985					80	37	3	0	0	0	0.026049	4	15077	15030;15077;15119;15171		93.883	44.214	1	3658500			15748	6847	8864	8865	19975;19976;19977;19978	19976					0.1273761083904219
IPYLVVKV	8	Unmodified	_IPYLVVKV_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.80517578125	2	465.804771	929.59499	-0.080919	-3.7692E-05	0.34335	0.00015994	0.26243	0.00012224	465.80480220831384	61.455	0.84541	61.446	61.162	62.008	-0.0094528					80	30	3	0	0	0	0.016422	3	15054	15054;15096;15149		106.85	54.152	1	3663900			15749	6847	8864	8865	19979;19980;19981	19979					0.1273761083904219
IPYMQVILM	9	2 Oxidation (M)	_IPYM(Oxidation (M))QVILM(Oxidation (M))_		IPYM(1)QVILM(1)		IPYM(67)QVILM(67)	0	0	2		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.2955322265625	2	570.295596	1138.57664	0.47258	0.00026951	-0.56786	-0.00032385	-0.095283	-5.434E-05	570.2954512149536	64.256	1.8009	64.256	63.859	65.66	0					109	65	4	0	0	0	0.017871	1	15931	15931		67.344	31.3	1	2154300			15750	3321	8865	8866	19982	19982		420;421			0.012893648105318789
IPYMQVILM	9	2 Oxidation (M)	_IPYM(Oxidation (M))QVILM(Oxidation (M))_		IPYM(1)QVILM(1)		IPYM(47)QVILM(47)	0	0	2		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2954711914062	2	570.295596	1138.57664	0.51104	0.00029144	-0.91509	-0.00052187	-0.40405	-0.00023043	570.2953638975972	64.158	1.4522	64.251	63.822	65.274	0.09288					113	53	5	0	0	0	0.11466	1	15893	15893		46.921	26.467	1	2005700			15751	3321	8865	8866	19983	19983		420;421			0.012893648105318789
IPYMQVILM	9	2 Oxidation (M)	_IPYM(Oxidation (M))QVILM(Oxidation (M))_		IPYM(1)QVILM(1)		IPYM(57)QVILM(57)	0	0	2		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.2955322265625	2	570.295596	1138.57664	0.46759	0.00026667	-0.45331	-0.00025852	0.014281	8.1445E-06	570.2952904139058	64.29	1.0415	64.28	63.769	64.811	-0.0095291					80	37	3	0	0	0	0.037693	2	15922	15922;15970		57.471	28.985	1	1933400			15752	3321	8865	8866	19984;19985	19984		420;421			0.012893648105318789
IPYPLPKQDL	10	Unmodified	_IPYPLPKQDL_					0	0	0		ERAP1|p.P833Hfs*12|1|0.14|ENSG00000164307|chr5:96781150-96781150|A/-|frameshift_variant;ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1	ERAP1|p.P833Hfs*12|1|0.14|ENSG00000164307|chr5:96781150-96781150|A/-|frameshift_variant	ERAP1|p.P833Hfs*12|1|0.14|ENSG00000164307|chr5:96781150-96781150|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.2924194335938	2	592.339707	1182.66486	0.77886	0.00046135	0.60611	0.00035903	1.385	0.00082038	592.3399698124036	54.95	0.27377	54.934	54.706	54.98	-0.015923					16	9	2	0	0	0	0.27086	1	13076	13076		32.037	11.584	1	288140			15753	5826	8866	8867	19986	19986					0.08083444717021848
IPYPLSENNQV	11	Unmodified	_IPYPLSENNQV_					0	0	0		ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.7899169921875	2	637.324785	1272.63502	0.33621	0.00021428	-1.145	-0.00072974	-0.80879	-0.00051546	637.8257317277722	58.958	0.42345	58.958	58.739	59.162	0					24	14	2	0	0	0	0.30327	1	14347	14347		26.021	16.638	1	197080			15754	1899	8867	8868	19987	19987					0.009604609810139664
IPYPLSENNQV	11	Unmodified	_IPYPLSENNQV_					0	0	0		ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	637.324785	1272.63502	0.59601	0.00037985	-0.87116	-0.00055521	-0.27515	-0.00017536	637.3237184581136	58.869	0.44888	58.96	58.677	59.126	0.091305	0.01995	0.00020574	NaN	30.703	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226050			15755	1899	8867	8868							0.009604609810139664
IPYPLSENNQV	11	Unmodified	_IPYPLSENNQV_					0	0	0		ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	ENSG00000104549|ENST00000265896|SQLE	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	637.324785	1272.63502	0.66575	0.0004243	-1.2681	-0.00080818	-0.60233	-0.00038388	637.3236391478052	58.917	0.37182	58.903	58.712	59.084	-0.014267	-0.037412	-0.0003002	NaN	30.703	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219580			15756	1899	8867	8868							0.009604609810139664
IPYPRPIHL	9	Unmodified	_IPYPRPIHL_					0	0	0		ENSG00000102897|ENST00000567954|LYRM1	ENSG00000102897|ENST00000567954|LYRM1	ENSG00000102897|ENST00000567954|LYRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3300170898438	2	553.329476	1104.6444	0.60513	0.00033483	0.19116	0.00010578	0.79629	0.00044061	553.3295904338123	47.87	1.3641	47.87	47.084	48.448	0					130	48	3	0	0	0	0.027237	3	10790	10790;10839;10889		61.357	61.357	1	6631100			15757	1790	8868	8869	19988;19989;19990	19988					0.09626318847836046
IPYPRPIHL	9	Unmodified	_IPYPRPIHL_					0	0	0		ENSG00000102897|ENST00000567954|LYRM1	ENSG00000102897|ENST00000567954|LYRM1	ENSG00000102897|ENST00000567954|LYRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.329833984375	2	553.329476	1104.6444	0.71609	0.00039623	0.066917	3.7027E-05	0.783	0.00043326	553.329502971658	47.83	1.4394	47.878	47.033	48.472	0.047523					135	53	3	0	0	0	0.0085732	4	10811	10762;10811;10856;10903		81.613	81.613	1	6942900			15758	1790	8868	8869	19991;19992;19993;19994	19992					0.09626318847836046
IPYPRPIHL	9	Unmodified	_IPYPRPIHL_					0	0	0		ENSG00000102897|ENST00000567954|LYRM1	ENSG00000102897|ENST00000567954|LYRM1	ENSG00000102897|ENST00000567954|LYRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3299560546875	2	553.329476	1104.6444	0.5629	0.00031147	0.24766	0.00013704	0.81056	0.00044851	553.3295749986019	47.854	1.3776	47.897	47.052	48.43	0.04332					150	51	4	0	0	0	0.015402	4	10809	10763;10809;10858;10907		71.134	71.134	1	6726400			15759	1790	8868	8869	19995;19996;19997;19998	19996					0.09626318847836046
IPYQDLPHL	9	Unmodified	_IPYQDLPHL_					0	0	0		nc|ENSG00000074416|Q99685-2|MGLL;nc|ENSG00000074416|Q99685|MGLL;ENSG00000074416|ENST00000265052|MGLL;ENST00000479967.5_1_3:127434467-127541990:-|nuORF	nc|ENSG00000074416|Q99685-2|MGLL	nc|ENSG00000074416|Q99685-2|MGLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.29638671875	2	548.295299	1094.57605	0.22609	0.00012396	-0.38062	-0.00020869	-0.15453	-8.4726E-05	548.2958033327168	59.602	2.8135	59.602	58.941	61.755	0					299	102	6	0	0	0	6.1879E-11	4	14523	14480;14523;14566;14585		183.04	97.767	1	79185000			15760	1021	8869	8870	19999;20000;20001;20002	20000					0.03254029477329823
IPYQDLPHL	9	Unmodified	_IPYQDLPHL_					0	0	0		nc|ENSG00000074416|Q99685-2|MGLL;nc|ENSG00000074416|Q99685|MGLL;ENSG00000074416|ENST00000265052|MGLL;ENST00000479967.5_1_3:127434467-127541990:-|nuORF	nc|ENSG00000074416|Q99685-2|MGLL	nc|ENSG00000074416|Q99685-2|MGLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2960815429688	2	548.295299	1094.57605	0.35614	0.00019527	-0.48145	-0.00026398	-0.12531	-6.8707E-05	548.2957626583893	59.467	2.8579	59.562	58.957	61.815	0.095093					324	103	6	0	0	0	2.942E-07	3	14436	14436;14477;14520		168.66	89.791	1	77857000			15761	1021	8869	8870	20003;20004;20005	20003					0.03254029477329823
IPYQDLPHL	9	Unmodified	_IPYQDLPHL_					0	0	0		nc|ENSG00000074416|Q99685-2|MGLL;nc|ENSG00000074416|Q99685|MGLL;ENSG00000074416|ENST00000265052|MGLL;ENST00000479967.5_1_3:127434467-127541990:-|nuORF	nc|ENSG00000074416|Q99685-2|MGLL	nc|ENSG00000074416|Q99685-2|MGLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.29638671875	2	548.295299	1094.57605	0.58553	0.00032104	-0.46604	-0.00025553	0.11949	6.5518E-05	548.2957932085444	59.59	2.8884	59.578	58.892	61.781	-0.011486					269	104	6	0	0	0	2.942E-07	3	14507	14463;14507;14549		168.66	93.73	1	79341000			15762	1021	8869	8870	20006;20007;20008	20007					0.03254029477329823
IPYQDLPHL	9	Unmodified	_IPYQDLPHL_					0	0	0		nc|ENSG00000074416|Q99685-2|MGLL;nc|ENSG00000074416|Q99685|MGLL;ENSG00000074416|ENST00000265052|MGLL;ENST00000479967.5_1_3:127434467-127541990:-|nuORF	nc|ENSG00000074416|Q99685-2|MGLL	nc|ENSG00000074416|Q99685-2|MGLL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3193359375	2	548.295299	1094.57605	0.52151	0.00028594	0.67546	0.00037035	1.197	0.00065629	548.2955894425124	62.241	2.3256	62.232	61.878	64.204	-0.0085526					139	85	2	0	0	0	0.059987	1	15558	15558		70.332	35.93	1	459850			15763	1021	8869	8870	20009	20009					0.03254029477329823
IPYRSVII	8	Unmodified	_IPYRSVII_					0	0	0		DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant;ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B	DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant	DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2896728515625	2	480.797478	959.580402	0.37958	0.0001825	-0.39595	-0.00019037	-0.016379	-7.875E-06	480.7970349329803	51.264	0.71928	51.264	50.846	51.565	0					47	26	2	0	0	0	0.2564	1	11936	11936		48.346	19.264	1	291640			15764	262	8870	8871	20010	20010					0.09899538690910958
IPYSPFRI	8	Unmodified	_IPYSPFRI_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7818908691406	2	496.781828	991.549102	0.82123	0.00040797	-0.4278	-0.00021252	0.39343	0.00019545	496.78152981838946	60.7	0.49377	60.7	60.469	60.962	0					31	17	2	0	0	0	0.077335	1	14872	14872		65.235	6.5562	1	1394500			15765	3377	8871	8872	20011	20011					0.052989656568115606
IPYSPFRI	8	Unmodified	_IPYSPFRI_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.78179931640625	2	496.781828	991.549102	0.77275	0.00038389	-0.38108	-0.00018931	0.39167	0.00019458	496.78159516047083	60.571	0.61641	60.668	60.449	61.065	0.096985					34	21	2	0	0	0	0.063256	1	14850	14850		71.922	13.243	1	1511900			15766	3377	8871	8872	20012	20012					0.052989656568115606
IPYSPFRI	8	Unmodified	_IPYSPFRI_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.78179931640625	2	496.781828	991.549102	0.77066	0.00038285	-0.35229	-0.00017501	0.41837	0.00020784	496.7815604398997	60.715	0.53675	60.706	60.431	60.968	-0.0094566					35	19	2	0	0	0	0.063256	1	14859	14859		71.922	6.6873	1	1430800			15767	3377	8871	8872	20013	20013					0.052989656568115606
IPYVPAFEK	9	Unmodified	_IPYVPAFEK_					0	0	0			REV__ENSG00000164597|ENST00000297135|COG5	REV__ENSG00000164597|ENST00000297135|COG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.29443359375	2	532.294768	1062.57498	0.65703	0.00034973	-0.11046	-5.8799E-05	0.54656	0.00029093	532.2943836881452	86.006	0.78557	85.997	85.644	86.43	-0.0090103					34	29	2	0	0	0	0.30166	1	22586	22586		8.5933	0.68312	1	110950	+		15768	17167	8872	8873	20014	20014					0.04619815108412695
IPYYFSAHAL	10	Unmodified	_IPYYFSAHAL_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;FAM120A|p.G386Afs*27|1|0.58|ENSG00000048828|chr9:93516004-93516004|G/-|frameshift_variant	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8052368164062	2	591.303124	1180.5917	0.06753	3.9931E-05	0.43451	0.00025693	0.50204	0.00029686	591.303035262348	61.344	0.40163	61.441	61.299	61.701	0.096985					36	14	3	0	0	0	0.10145	1	15083	15083		47.749	20.865	1	370680			15769	12572	8873	8874	20015	20015					0.008623159943681458
IPYYFSAHAL	10	Unmodified	_IPYYFSAHAL_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;FAM120A|p.G386Afs*27|1|0.58|ENSG00000048828|chr9:93516004-93516004|G/-|frameshift_variant	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	591.303124	1180.5917	0.22787	0.00013474	-0.31141	-0.00018414	-0.083538	-4.9396E-05	591.8046471390456	61.499	0.53	61.499	61.254	61.784	0	0.040001	-0.00035226	NaN	47.749	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422950			15770	12572	8873	8874							0.008623159943681458
IPYYFSAHAL	10	Unmodified	_IPYYFSAHAL_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;FAM120A|p.G386Afs*27|1|0.58|ENSG00000048828|chr9:93516004-93516004|G/-|frameshift_variant	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	591.303124	1180.5917	0.10181	6.0202E-05	0.075396	4.4582E-05	0.17721	0.00010478	591.805068919058	61.446	0.45603	61.436	61.271	61.727	-0.0094566	-0.022285	0.00010518	NaN	47.749	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307780			15771	12572	8873	8874							0.008623159943681458
IQAAQLLQLK	10	Unmodified	_IQAAQLLQLK_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3514404296875	2	563.353148	1124.69174	0.47294	0.00026643	-2.3464	-0.0013218	-1.8734	-0.0010554	563.351358300846	85.668	0.96325	85.668	85.39	86.354	0					94	34	3	0	0	0	0.38515	1	22525	22525		6.2058	0.47393	1	722760			15772	6167	8874	8875	20016	20016					0.13438553328182934
IQAAQLLQLK	10	Unmodified	_IQAAQLLQLK_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	563.353148	1124.69174	0.51618	0.00029079	-3.2464	-0.0018289	-2.7302	-0.0015381	563.351380887641	85.542	0.97509	85.623	85.308	86.283	0.080887	0.020976	-0.00014167	NaN	6.2058	68	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	640460			15773	6167	8874	8875							0.13438553328182934
IQAAQLLQLK	10	Unmodified	_IQAAQLLQLK_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	563.353148	1124.69174	0.4599	0.00025909	-3.0442	-0.001715	-2.5843	-0.0014559	563.3514307656276	85.524	0.9291	85.514	85.326	86.255	-0.010429	-0.087738	8.6175E-05	NaN	6.2058	61	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	589220			15774	6167	8874	8875							0.13438553328182934
IQAEIYQKNL	10	Unmodified	_IQAEIYQKNL_					0	0	0		ENSG00000137814|ENST00000260372|HAUS2	ENSG00000137814|ENST00000260372|HAUS2	ENSG00000137814|ENST00000260372|HAUS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.23651123046875	3	407.227556	1218.66084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.159	1	32.201	31.701	32.701	0.042366								0	0	0	0.36199	1	6096	6096		9.7643	3.5724	1				15775	4079	8875	8876	20017	20017					0.06025355223300721
IQALESWLPR	10	Unmodified	_IQALESWLPR_					0	0	0		ENST00000265450.5_1_10:82275833-82277729:+|nuORF;nc|ENSG00000108219|Q8NG11-3|TSPAN14;nc|ENSG00000108219|Q8NG11-2|TSPAN14;ENSG00000108219|ENST00000429989|TSPAN14	ENST00000265450.5_1_10:82275833-82277729:+|nuORF	ENST00000265450.5_1_10:82275833-82277729:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5525817871094	3	404.896029	1211.66626	-0.28973	-0.00011731	0.28389	0.00011494	-0.0058451	-2.3667E-06	405.23079843427655	22.598	0.14493	22.553	22.438	22.583	-0.044867					6	4	2	0	0	0	0.31267	1	3164	3164		8.9762	3.9287	1	8593.2			15776	2167	8876	8877	20018	20018					0.06889078805738791
IQARSKPKP	9	Unmodified	_IQARSKPKP_					0	0	0		Harlequin-int_dup68|chr1:206053001-206053902:+|4.829576727494633|0.4316687424735471|3.48|537.0|42|2|anti-sense	Harlequin-int_dup68|chr1:206053001-206053902:+|4.829576727494633|0.4316687424735471|3.48|537.0|42|2|anti-sense	Harlequin-int_dup68|chr1:206053001-206053902:+|4.829576727494633|0.4316687424735471|3.48|537.0|42|2|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.332763671875	2	512.816733	1023.61891	0.26837	0.00013762	0.41162	0.00021108	0.67998	0.00034871	512.8168444062134	32.812	0.46823	32.868	32.675	33.143	0.055309					25	16	2	0	0	0	0.25112	1	6343	6343		16.149	3.9084	1	160480			15777	12393	8877	8878	20019	20019					0.10804844325423346
IQCLDLLT	8	Unmodified	_IQCLDLLT_					0	0	0			REV__ENSG00000162460|ENST00000375782|TMEM82	REV__ENSG00000162460|ENST00000375782|TMEM82	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7605895996094	2	459.751879	917.489204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.498	1	65.498	64.998	65.998	0								0	0	0	0.29147	1	16342	16342		30.225	0	1		+		15778	16985	8878	8879	20020	20020					0.027159069312460815
IQEEKRRPR	9	Unmodified	_IQEEKRRPR_					0	0	0		ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.8918762207031	3	404.570427	1210.68945	-0.29568	-0.00011962	-0.84447	-0.00034165	-1.1402	-0.00046127	404.57009262777336	23.397	0.91475	23.309	22.658	23.573	-0.087608					81	32	4	0	0	0	0.25817	1	3421	3421		6.6304	6.6304	1	190600			15779	1456	8879	8880	20021	20021					0.0925351764306015
IQFADYIFP	9	Unmodified	_IQFADYIFP_					0	0	0		ENSG00000083123|ENST00000320393|BCKDHB;nc|ENSG00000083123|P21953-2|BCKDHB	ENSG00000083123|ENST00000320393|BCKDHB	ENSG00000083123|ENST00000320393|BCKDHB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.28369140625	2	557.2844	1112.55425	0.42166	0.00023498	-0.13259	-7.3888E-05	0.28907	0.0001611	557.2842017715668	89.069	0.73987	89.069	88.702	89.442	0					51	32	2	0	0	0	0.32415	1	23622	23622		5.2307	0	1	143880			15780	1215	8880	8881	20022	20022					0.0024722472871872014
IQFATRQTV	9	Unmodified	_IQFATRQTV_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8138427734375	2	532.298373	1062.58219	0.29198	0.00015542	-1.0132	-0.00053932	-0.72121	-0.0003839	532.294489149124	17.968	0.43291	17.907	17.736	18.169	-0.060431					39	15	3	0	0	0	0.30459	1	1786	1786		8.1555	0.8663	1	83834	+		15781	23013	8881	8882	20023	20023					0.053405477088290354
IQFNPPLSEK	10	Unmodified	_IQFNPPLSEK_					0	0	0		nc|ENSG00000165097|Q8NB78-2|KDM1B;ENSG00000165097|ENST00000650836|KDM1B	nc|ENSG00000165097|Q8NB78-2|KDM1B	nc|ENSG00000165097|Q8NB78-2|KDM1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8198852539062	2	586.819138	1171.62372	0.56697	0.00033271	-0.19489	-0.00011437	0.37207	0.00021834	586.819466117491	48.268	0.65263	48.268	48.012	48.665	0					62	22	4	0	0	0	0.032393	1	11022	11022		62.869	36.6	1	1008700			15782	5923	8882	8883	20024	20024					0.04477683677509958
IQFNPPLSEK	10	Unmodified	_IQFNPPLSEK_					0	0	0		nc|ENSG00000165097|Q8NB78-2|KDM1B;ENSG00000165097|ENST00000650836|KDM1B	nc|ENSG00000165097|Q8NB78-2|KDM1B	nc|ENSG00000165097|Q8NB78-2|KDM1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8192138671875	2	586.819138	1171.62372	0.67165	0.00039414	0.46067	0.00027033	1.1323	0.00066446	586.8192104720767	48.28	0.77706	48.327	47.994	48.771	0.047523					62	28	3	0	0	0	0.08437	1	11008	11008		51.488	25.22	1	1198400			15783	5923	8882	8883	20025	20025					0.04477683677509958
IQFNPPLSEK	10	Unmodified	_IQFNPPLSEK_					0	0	0		nc|ENSG00000165097|Q8NB78-2|KDM1B;ENSG00000165097|ENST00000650836|KDM1B	nc|ENSG00000165097|Q8NB78-2|KDM1B	nc|ENSG00000165097|Q8NB78-2|KDM1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.820068359375	2	586.819138	1171.62372	0.5893	0.00034581	0.63915	0.00037507	1.2285	0.00072088	586.8193769049534	48.267	0.76807	48.31	47.875	48.643	0.043324					60	28	3	0	0	0	0.099967	1	10995	10995		48.073	21.805	1	990500			15784	5923	8882	8883	20026	20026					0.04477683677509958
IQFNWCHPQ	9	Unmodified	_IQFNWCHPQ_					0	0	0		ENST00000441188.2_1_X:92477682-92478501:-|nuORF	ENST00000441188.2_1_X:92477682-92478501:-|nuORF	ENST00000441188.2_1_X:92477682-92478501:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3695678710938	2	586.768926	1171.5233	0.56939	0.0003341	1.8128	0.0010637	2.3822	0.0013978	587.2717180296823	48.347	0.45316	48.391	48.218	48.672	0.043324					28	16	2	0	0	0	0.24311	1	11023	11023		16.942	12.186	1	381280			15785	10552	8883	8884	20027	20027					-0.05560251857127696
IQGIMRIRNN	10	Unmodified	_IQGIMRIRNN_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.5525817871094	3	405.564396	1213.67136	-0.17915	-7.2657E-05	-3.9445	-0.0015998	-4.1237	-0.0016724	405.56329627748426	22.149	0.17766	22.149	22.045	22.222	0					7	5	2	0	0	0	0.35267	1	3068	3068		12.175	6.3913	1	30888	+		15786	14358	8884	8885	20028	20028					0.0730705939672589
IQGKDLKADR	10	Unmodified	_IQGKDLKADR_					0	0	0			REV__ENSG00000126803|ENST00000247207|HSPA2	REV__ENSG00000126803|ENST00000247207|HSPA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3280639648438	2	572.327662	1142.64077	0.064871	3.7128E-05	-0.10517	-6.0192E-05	-0.0403	-2.3065E-05	572.3278899739317	25.911	0.36239	25.911	25.798	26.161	0					19	12	2	0	0	0	0.40403	1	4237	4237		2.7352	0	1	109780	+		15787	15324	8885	8886	20029	20029					0.07515604283321409
IQHAYRLL	8	Unmodified	_IQHAYRLL_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.29638671875	2	507.298176	1012.5818	0.40022	0.00020303	-3.3371	-0.0016929	-2.9369	-0.0014899	507.29615958957334	20.571	0.71612	20.571	20.31	21.026	0					40	24	2	0	0	0	0.43043	1	2621	2621		12.532	0.29089	1	116480			15788	7645	8886	8887	20030	20030					0.07601172779664012
IQHGTKRNR	9	Unmodified	_IQHGTKRNR_					0	0	0			REV__ENSG00000168772|ENST00000394767|CXXC4	REV__ENSG00000168772|ENST00000394767|CXXC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3159790039062	2	555.317963	1108.62137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.6	1	114.6	114.1	115.1	0								0	0	0	0.26513	1	29728	29728		1.4819	0.79152	1		+		15789	17477	8887	8888	20031	20031					0.07140692783082159
IQHGTKRNR	9	Unmodified	_IQHGTKRNR_					0	0	0			REV__ENSG00000168772|ENST00000394767|CXXC4	REV__ENSG00000168772|ENST00000394767|CXXC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.31640625	2	555.317963	1108.62137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.36	1	114.37	113.87	114.87	0.016708								0	0	0	0.26513	1	29739	29739		1.4819	0.79152	1		+		15790	17477	8887	8888	20032	20032					0.07140692783082159
IQIISTILK	9	Unmodified	_IQIISTILK_					0	0	0		ENSG00000213215|ENST00000641412|OR2F1	ENSG00000213215|ENST00000641412|OR2F1	ENSG00000213215|ENST00000641412|OR2F1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8394165039062	2	514.839342	1027.66413	0.50466	0.00025982	0.055241	2.844E-05	0.5599	0.00028826	514.8393044768607	65.656	0.86529	65.656	65.373	66.239	0					69	30	3	0	0	0	0.05341	2	16384	16384;16434		51.63	3.8811	1	1473300			15791	8337	8888	8889	20033;20034	20033					0.15140650067951356
IQIISTILK	9	Unmodified	_IQIISTILK_					0	0	0		ENSG00000213215|ENST00000641412|OR2F1	ENSG00000213215|ENST00000641412|OR2F1	ENSG00000213215|ENST00000641412|OR2F1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.839599609375	2	514.839342	1027.66413	0.1534	7.8977E-05	0.40399	0.00020799	0.55739	0.00028697	514.8394793066803	65.539	0.87153	65.628	65.352	66.224	0.088882					70	31	3	0	0	0	0.13748	1	16388	16388		32.786	3.7041	1	1594400			15792	8337	8888	8889	20035	20035					0.15140650067951356
IQILSIKLT	9	Unmodified	_IQILSIKLT_					0	0	0			REV__ENST00000573681.1_1_17:1563133-1564615:-|nuORF	REV__ENST00000573681.1_1_17:1563133-1564615:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.8395385742188	2	514.839342	1027.66413	0.1534	7.8977E-05	0.40399	0.00020799	0.55739	0.00028697	514.8394793066803	65.539	0.87153	65.628	65.352	66.224	0.088882					70	31	3	0	0	0	0.074552	1	16337	16337		43.772	7.2662	1	1594400	+		15793	17820	8889	8890	20036	20036					0.15140650067928618
IQILSIKLT	9	Unmodified	_IQILSIKLT_					0	0	0			REV__ENST00000573681.1_1_17:1563133-1564615:-|nuORF	REV__ENST00000573681.1_1_17:1563133-1564615:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.8394165039062	2	514.839342	1027.66413	0.34465	0.00017744	0.17672	9.0983E-05	0.52137	0.00026842	514.8393556954964	65.662	0.79731	65.651	65.372	66.169	-0.011337					69	28	4	0	0	0	0.05341	1	16379	16379		51.63	7.8574	1	1451000	+		15794	17820	8889	8890	20037	20037					0.15140650067928618
IQKELKNTSLS	11	Unmodified	_IQKELKNTSLS_					0	0	0			REV__nc|ENSG00000091879|O15123-2|ANGPT2	REV__nc|ENSG00000091879|O15123-2|ANGPT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8602294921875	2	630.861534	1259.70852	0.61954	0.00039084	-1.3118	-0.00082756	-0.69226	-0.00043672	630.8600905460387	83.905	0.86528	83.905	83.298	84.163	0					84	33	3	0	0	0	0.43149	1	22033	22033		7.1017	2.2047	1	1030800	+		15795	14071	8890	8891	20038	20038					0.08905009423483534
IQKKSSSKR	9	Unmodified	_IQKKSSSKR_					0	0	0			REV__ENST00000563581.1_1_16:34640595-34641290:-|nuORF	REV__ENST00000563581.1_1_16:34640595-34641290:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3258666992188	2	531.324922	1060.63529	0.47429	0.000252	0.2662	0.00014144	0.74049	0.00039344	531.3249179068306	86.158	1.0252	86.242	85.726	86.751	0.084251					106	39	5	0	0	0	0.31417	1	22600	22600		6.7232	6.7232	1	1624300	+		15796	22331	8891	8892	20039	20039					0.10739925491520808
IQKLFMIV	8	Unmodified	_IQKLFMIV_					0	0	0			REV__nc|ENSG00000134343|Q9BYT9-2|ANO3	REV__nc|ENSG00000134343|Q9BYT9-2|ANO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3034362792969	2	496.304081	990.59361	0.46001	0.00022831	-0.42119	-0.00020904	0.038821	1.9267E-05	496.3036602299369	86.619	0.78973	86.703	86.461	87.251	0.084251					70	32	3	0	0	0	0.45851	1	22768	22768		2.8892	0	1	440520	+		15797	15668	8892	8893	20040	20040					0.09793653478629949
IQKMNPPKK	9	Unmodified	_IQKMNPPKK_					0	0	0		HEBP2|p.N198Mfs*26|1|0.34|ENSG00000051620|chr6:138413047-138413047|A/-|frameshift_variant	HEBP2|p.N198Mfs*26|1|0.34|ENSG00000051620|chr6:138413047-138413047|A/-|frameshift_variant	HEBP2|p.N198Mfs*26|1|0.34|ENSG00000051620|chr6:138413047-138413047|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2839965820312	2	542.320794	1082.62703	0.24835	0.00013469	3.7981	0.0020598	4.0464	0.0021945	542.3232251979493	15.693	0.28812	15.693	15.528	15.816	0					14	9	2	0	0	0	0.26168	1	1125	1125		1.8442	0.36234	1	18331			15798	12394	8893	8894	20041	20041					0.08902655250517455
IQKRPKPSL	9	Unmodified	_IQKRPKPSL_					0	0	0			REV__ENSG00000215356|ENST00000400120|ZNF705B	REV__ENSG00000215356|ENST00000400120|ZNF705B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.818603515625	2	533.840208	1065.66586	0.62895	0.00033576	-0.23223	-0.00012398	0.39672	0.00021178	533.8401237045929	45.565	0.40286	45.63	45.408	45.811	0.065048					21	14	2	0	0	0	0.25202	1	10145	10145		10.824	2.2306	1	136960	+		15799	19079	8894	8895	20042	20042					0.13565703876543012
IQKRPKPSL	9	Unmodified	_IQKRPKPSL_					0	0	0			REV__ENSG00000215356|ENST00000400120|ZNF705B	REV__ENSG00000215356|ENST00000400120|ZNF705B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	533.840208	1065.66586	0.86535	0.00046196	-0.60405	-0.00032247	0.26129	0.00013949	533.8399012387134	45.759	0.41457	45.759	45.53	45.945	0	0.088209	-0.00034281	NaN	10.824	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197260	+		15800	19079	8894	8895							0.13565703876543012
IQKRPKPSL	9	Unmodified	_IQKRPKPSL_					0	0	0			REV__ENSG00000215356|ENST00000400120|ZNF705B	REV__ENSG00000215356|ENST00000400120|ZNF705B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	533.840208	1065.66586	0.48439	0.00025859	-0.01502	-8.0184E-06	0.46937	0.00025057	533.8400990238207	45.563	0.48219	45.623	45.418	45.9	0.059837	-0.047651	0.00028609	NaN	10.824	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228170	+		15801	19079	8894	8895							0.13565703876543012
IQKTEWKRK	9	Unmodified	_IQKTEWKRK_					0	0	0		nc|ENSG00000158163|Q8IYY4-2|DZIP1L;ENSG00000158163|ENST00000327532|DZIP1L	nc|ENSG00000158163|Q8IYY4-2|DZIP1L	nc|ENSG00000158163|Q8IYY4-2|DZIP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5526123046875	3	406.24354	1215.70879	-0.24489	-9.9484E-05	-0.099268	-4.0327E-05	-0.34415	-0.00013981	406.24342554329644	22.344	0.93031	22.294	21.855	22.785	-0.049377					58	32	3	0	0	0	0.2524	1	3119	3119		7.609	0.97858	1	153840			15802	5345	8895	8896	20043	20043					0.10956473933970301
IQLDKSLPAPL	11	Unmodified	_IQLDKSLPAPL_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8562622070312	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.56	1	97.56	97.06	98.06	0								0	0	0	0.37382	1	26094	26094		2.9952	0.26005	1				15803	3536	8896	8897	20044	20044					0.11287116262769814
IQLFLILIC	9	Unmodified	_IQLFLILIC_					0	0	0			REV__MER72B_dup8|chr1:206066627-206067269:-|1.6590386670019752|0.1593671915957709|3.38|525.0|22|3|sense	REV__MER72B_dup8|chr1:206066627-206067269:-|1.6590386670019752|0.1593671915957709|3.38|525.0|22|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.8316040039062	2	538.332839	1074.65112	0.43432	0.00023381	0.51562	0.00027758	0.94994	0.00051138	538.333100428202	65.251	2.234	65.251	63.665	65.899	0					191	81	3	0	0	0	0.19839	1	16265	16265		21.747	5.8995	1	1424900	+		15804	22862	8897	8898	20045	20045					0.11678495684213885
IQLSSNLQSK	10	Unmodified	_IQLSSNLQSK_					0	0	0		nc|ENSG00000138346|P51530-2|DNA2	nc|ENSG00000138346|P51530-2|DNA2	nc|ENSG00000138346|P51530-2|DNA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.3141479492188	2	559.31422	1116.61389	-0.0063559	-3.5549E-06	-0.25533	-0.00014281	-0.26169	-0.00014637	559.3140039863879	13.333	0.37201	13.234	13.069	13.441	-0.099291					24	12	3	0	0	0	0.31942	1	408	408		6.1918	0.78914	1	166130			15805	12723	8898	8899	20046	20046					0.06024495672136254
IQLVRVLL	8	Unmodified	_IQLVRVLL_					0	0	0			REV__CENPM|p.R145L|1|0.4|ENSG00000100162|chr22:41939165-41939165|C/A|missense_variant	REV__CENPM|p.R145L|1|0.4|ENSG00000100162|chr22:41939165-41939165|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7684020996094	2	477.328945	952.643337	0.39246	0.00018733	-0.37039	-0.0001768	0.022074	1.0537E-05	477.3287486566095	72.086	0.617	72.142	71.896	72.513	0.056572					45	22	3	0	0	0	0.34247	1	18301	18301		4.756	0	1	160380	+		15806	13147	8899	8900	20047	20047					0.16512104478943002
IQLYVSFS	8	Unmodified	_IQLYVSFS_					0	0	0		ENST00000304661.5_1_X:119759908-119760061:-|nuORF	ENST00000304661.5_1_X:119759908-119760061:-|nuORF	ENST00000304661.5_1_X:119759908-119760061:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.27691650390625	2	478.758018	955.501483	0.10974	5.2537E-05	2.6022	0.0012458	2.712	0.0012984	478.75814075797075	76.439	0.63755	76.439	76.22	76.858	0					63	22	4	0	0	0	0.42077	1	19749	19749		15.847	2.3393	1	465070			15807	9258	8900	8901	20048	20048					0.021952666659558417
IQNDRQLQY	9	Unmodified	_IQNDRQLQY_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3019409179688	2	589.301644	1176.58874	0.31035	0.00018289	0.19369	0.00011414	0.50404	0.00029703	589.301738483401	30.914	0.66525	30.914	30.619	31.284	0					60	23	4	0	0	0	0.015027	2	5736	5687;5736		71.708	43.818	1	524460			15808	1535	8901	8902	20049;20050	20050					0.0075044086956950196
IQNDRQLQY	9	Unmodified	_IQNDRQLQY_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3018798828125	2	589.301644	1176.58874	0.19079	0.00011243	0.52487	0.00030931	0.71566	0.00042174	589.3018462280284	30.956	0.63889	30.984	30.693	31.332	0.027948					54	22	3	0	0	0	0.0047555	2	5739	5688;5739		88.364	53.962	1	597430			15809	1535	8901	8902	20051;20052	20052					0.0075044086956950196
IQNDRQLQY	9	Unmodified	_IQNDRQLQY_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3017578125	2	589.301644	1176.58874	0.23169	0.00013653	0.35155	0.00020717	0.58324	0.0003437	589.3018234885734	30.81	0.82743	30.838	30.638	31.466	0.027159					53	29	3	0	0	0	0.0047555	2	5676	5676;5730		88.364	53.962	1	638800			15810	1535	8901	8902	20053;20054	20053					0.0075044086956950196
IQNLNEERILA	11	Unmodified	_IQNLNEERILA_					0	0	0		ENST00000493227.1_1_7:7622738-7646720:+|nuORF;nc|ENSG00000164654|Q9NXC5-2|MIOS;ENSG00000164654|ENST00000340080|MIOS	ENST00000493227.1_1_7:7622738-7646720:+|nuORF	ENST00000493227.1_1_7:7622738-7646720:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.9330139160156	3	438.245498	1311.71466	-0.2415	-0.00010584	1.5751	0.00069029	1.3336	0.00058445	438.24654108440006	27.731	0.14614	27.731	27.643	27.789	0					6	4	2	0	0	0	0.33321	1	4746	4746		1.0136	0	1	37382			15811	5861	8902	8903	20055	20055					0.07127527655006816
IQNPTMINK	9	Oxidation (M)	_IQNPTM(Oxidation (M))INK_		IQNPTM(1)INK		IQNPTM(51)INK	0	0	1		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7842407226562	2	537.784241	1073.55393	0.40607	0.00021838	-0.18189	-9.7817E-05	0.22418	0.00012056	537.783988101961	27.023	0.94547	27.023	26.528	27.474	0					81	32	3	0	0	0	0.053988	2	4551	4500;4551		51.415	15.288	1	561380			15812	6156	8903	8904	20056;20057	20057		721			0.020094817372410034
IQNPTMINK	9	Oxidation (M)	_IQNPTM(Oxidation (M))INK_		IQNPTM(1)INK		IQNPTM(87)INK	0	0	1		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7843017578125	2	537.784241	1073.55393	0.30663	0.0001649	-0.07446	-4.0044E-05	0.23217	0.00012486	537.7840724984053	27.047	0.9592	27.026	26.478	27.437	-0.02141					75	33	3	0	0	0	0.0048951	2	4549	4509;4549		87.258	34.99	1	676270			15813	6156	8903	8904	20058;20059	20059		721			0.020094817372410034
IQNPTMINK	9	Oxidation (M)	_IQNPTM(Oxidation (M))INK_		IQNPTM(1)INK		IQNPTM(68)INK	0	0	1		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7841186523438	2	537.784241	1073.55393	0.52514	0.00028241	-0.1766	-9.4975E-05	0.34854	0.00018744	537.7840590182008	27.032	1.1048	27.02	26.541	27.645	-0.01156					97	38	4	0	0	0	0.017549	3	4517	4470;4517;4563		67.838	23.98	1	653050			15814	6156	8903	8904	20060;20061;20062	20061		721			0.020094817372410034
IQPAPLTECW	10	Unmodified	_IQPAPLTECW_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.8565063476562	2	579.286617	1156.55868	0.37232	0.00021568	-1.5925	-0.00092249	-1.2201	-0.0007068	579.2866205825829	37.925	0.70589	38.016	37.667	38.373	0.090885					53	25	3	0	0	0	0.31926	1	7916	7916		5.7319	1.4026	1	217500	+		15815	17609	8904	8905	20063	20063					-0.013336341199874369
IQPHNFEL	8	Unmodified	_IQPHNFEL_					0	0	0			REV__ENSG00000133116|ENST00000380099|KL	REV__ENSG00000133116|ENST00000380099|KL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.25885009765625	2	499.258717	996.50288	0.3498	0.00017464	0.040913	2.0426E-05	0.39071	0.00019506	499.2593247082668	55.403	3.3198	55.403	55.008	58.328	0					295	121	5	0	0	0	0.32038	1	13674	13674		28.487	3.813	1	73217000	+		15816	15609	8905	8906	20064	20064					0.004489007547249457
IQPYWIGDGV	10	Unmodified	_IQPYWIGDGV_					0	0	0		ENSG00000187416|ENST00000424859|LHFPL3	ENSG00000187416|ENST00000424859|LHFPL3	ENSG00000187416|ENST00000424859|LHFPL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2936401367188	2	574.292756	1146.57096	0.15786	9.0661E-05	-0.38182	-0.00021928	-0.22396	-0.00012862	574.2924605287484	17.943	0.69708	17.826	17.545	18.242	-0.11739					46	23	3	0	0	0	0.40106	1	1873	1873		3.2813	0.54611	1	200020			15817	7679	8906	8907	20065	20065					0.003537256147183143
IQQQGIHFME	10	Unmodified	_IQQQGIHFME_					0	0	0			REV__nc|ENSG00000166073|Q14439-2|GPR176	REV__nc|ENSG00000166073|Q14439-2|GPR176	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8840026855469	3	410.869374	1229.58629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.885	1	19.829	19.329	20.329	-0.055693								0	0	0	0.35216	1	2368	2368		8.4443	4.8572	1		+		15818	17289	8907	8908	20066	20066					-0.019317308597464944
IQQQGIHFME	10	Unmodified	_IQQQGIHFME_					0	0	0			REV__nc|ENSG00000166073|Q14439-2|GPR176	REV__nc|ENSG00000166073|Q14439-2|GPR176	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8838806152344	3	410.869374	1229.58629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.029	1	19.973	19.473	20.473	-0.055693								0	0	0	0.35216	1	2411	2411		8.4443	2.6609	1		+		15819	17289	8907	8908	20067	20067					-0.019317308597464944
IQQRVRPRS	9	Unmodified	_IQQRVRPRS_					0	0	0		ENST00000472541.5_1_1:1235057-1244982:-|nuORF	ENST00000472541.5_1_1:1235057-1244982:-|nuORF	ENST00000472541.5_1_1:1235057-1244982:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.35888671875	2	570.341438	1138.66832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.798	1	86.792	86.292	87.292	-0.0056229								0	0	0	0.22377	1	22843	22843		14.838	5.4551	1				15820	10895	8908	8909	20068	20068					0.10453552334229244
IQRHLAFDI	9	Unmodified	_IQRHLAFDI_					0	0	0		nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.8123168945312	2	556.81419	1111.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.742	1	14.742	14.242	15.242	0								0	0	0	0.24066	1	817	817		9.3831	0	1				15821	6430	8909	8910	20069	20069					0.062485404627977914
IQRLHHKF	8	Unmodified	_IQRLHHKF_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3300170898438	2	539.817067	1077.61958	0.4251	0.00022947	0.76936	0.00041531	1.1945	0.00064479	539.8177910620582	75.765	1.7292	75.818	74.783	76.512	0.053314					85	62	2	0	0	0	0.42758	1	19550	19550		13.508	0	1	1895600	+		15822	15623	8910	8911	20070	20070					0.08387683765113252
IQRTHVST	8	Unmodified	_IQRTHVST_					0	0	0		nc|ENSG00000183833|Q7Z4T9-6|CFAP91;nc|ENSG00000183833|Q7Z4T9-3|CFAP91;nc|ENSG00000183833|Q7Z4T9-8|CFAP91;ENST00000482927.5_1_3:119422024-119469941:+|nuORF;ENSG00000183833|ENST00000273390|CFAP91	nc|ENSG00000183833|Q7Z4T9-6|CFAP91	nc|ENSG00000183833|Q7Z4T9-6|CFAP91	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.787841796875	2	471.261791	940.509028	0.10564	4.9783E-05	-0.62533	-0.00029469	-0.51969	-0.00024491	471.26139462041795	17.706	0.61437	17.646	17.414	18.028	-0.060431					36	21	2	0	0	0	0.3408	1	1682	1682		14.838	0	1	52950			15823	7413	8911	8912	20071	20071					0.03639418986244891
IQRTKPFH	8	Unmodified	_IQRTKPFH_					0	0	0		ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2991333007812	2	513.795801	1025.57705	0.1149	5.9037E-05	0.55735	0.00028637	0.67226	0.0003454	514.2979497525108	19.24	1.0692	19.24	18.864	19.933	0					96	37	5	0	0	0	0.45431	1	2240	2240		4.3292	0	1	408390			15824	8117	8912	8913	20072	20072					0.0652828863690047
IQRTPKIQVY	10	Unmodified	_IQRTPKIQVY_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.7855224609375	2	623.36933	1244.72411	-0.26826	-0.00016723	1.1168	0.0006962	0.84858	0.00052898	623.3699592520427	35.295	0.34814	35.295	35.118	35.466	0					17	12	2	0	0	0	0.31859	1	7042	7042		9.544	3.8121	1	104930			15825	6103	8913	8914	20073	20073					0.11153340731175376
IQRTPKIQVY	10	Unmodified	_IQRTPKIQVY_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.2835083007812	2	623.36933	1244.72411	-0.58842	-0.0003668	1.3516	0.00084258	0.76322	0.00047577	623.3701988436488	35.254	0.37877	35.331	35.088	35.467	0.077377					17	13	2	0	0	0	0.32106	1	6974	6974		2.7352	2.3846	1	98288			15826	6103	8913	8914	20074	20074					0.11153340731175376
IQSFFLFSISG	11	Unmodified	_IQSFFLFSISG_					0	0	0			REV__nc|ENSG00000175426|P29120-2|PCSK1	REV__nc|ENSG00000175426|P29120-2|PCSK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.3447265625	2	623.329339	1244.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.164	1	72.164	71.664	72.664	0								0	0	0	0.34539	1	18382	18382		11.495	4.7715	1		+		15827	23096	8914	8915	20075	20075					0.0315885433733456
IQSIISTVEP	10	Unmodified	_IQSIISTVEP_					0	0	0		ENSG00000079739|ENST00000371084|PGM1	ENSG00000079739|ENST00000371084|PGM1	ENSG00000079739|ENST00000371084|PGM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.795166015625	2	543.805697	1085.59684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.232	1	35.232	34.732	35.732	0								0	0	0	0.3392	1	7033	7033		19.362	6.8304	1				15828	1139	8915	8916	20076	20076					0.05746575066336845
IQSRQLVR	8	Unmodified	_IQSRQLVR_					0	0	0		nc|ENSG00000152556|P08237-3|PFKM	nc|ENSG00000152556|P08237-3|PFKM	nc|ENSG00000152556|P08237-3|PFKM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2646484375	2	500.306532	998.598512	0.4443	0.00022229	0.85423	0.00042737	1.2985	0.00064966	500.3072043709945	30.304	0.4369	30.304	30.088	30.525	0					29	15	2	0	0	0	0.34068	1	5563	5563		16.149	1.3108	1	196250			15829	12764	8916	8917	20077	20077					0.09915673665602753
IQSTVMLDK	9	Oxidation (M)	_IQSTVM(Oxidation (M))LDK_		IQSTVM(1)LDK		IQSTVM(69)LDK	0	0	1		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7785034179688	2	525.778625	1049.5427	0.68063	0.00035786	-0.36388	-0.00019132	0.31675	0.00016654	525.7782711266494	29.617	0.90088	29.617	29.324	30.225	0					74	31	4	0	0	0	0.016571	1	5337	5337		69.338	34.406	1	856790			15830	2643	8917	8918	20078	20078		330			0.019906596430928403
IQSTVMLDK	9	Oxidation (M)	_IQSTVM(Oxidation (M))LDK_		IQSTVM(1)LDK		IQSTVM(57)LDK	0	0	1		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7786254882812	2	525.778625	1049.5427	0.50204	0.00026396	-0.25024	-0.00013157	0.25181	0.00013239	525.778443129714	29.558	0.87115	29.571	29.272	30.143	0.012266					72	29	4	0	0	0	0.038291	2	5273	5273;5325		57.249	22.847	1	873130			15831	2643	8917	8918	20079;20080	20079		330			0.019906596430928403
IQSTVMLDK	9	Oxidation (M)	_IQSTVM(Oxidation (M))LDK_		IQSTVM(1)LDK		IQSTVM(61)LDK	0	0	1		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.778564453125	2	525.778625	1049.5427	0.2915	0.00015326	0.098633	5.1859E-05	0.39013	0.00020512	525.7785021386528	29.603	1.0209	29.616	29.3	30.321	0.013474					68	34	3	0	0	0	0.02847	1	5330	5330		60.899	19.06	1	822580			15832	2643	8917	8918	20081	20081		330			0.019906596430928403
IQTIHPQEL	9	Unmodified	_IQTIHPQEL_					0	0	0		nc|ENSG00000162006|Q96KJ4|MSLNL;ENSG00000162006|ENST00000543963|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	nc|ENSG00000162006|Q96KJ4|MSLNL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3143310546875	2	539.798206	1077.58186	0.48952	0.00026424	-0.91152	-0.00049204	-0.422	-0.0002278	539.7981939572952	46.595	0.84082	46.649	46.355	47.196	0.054371					44	29	2	0	0	0	0.22674	1	10648	10648		12.241	1.4167	1	648880			15833	5542	8918	8919	20082	20082					0.046171279889904326
IQTPELGEVFQ	11	Unmodified	_IQTPELGEVFQ_					0	0	0		ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;nc|ENSG00000154305|Q5JRA6-2|MIA3	ENSG00000154305|ENST00000344922|MIA3	ENSG00000154305|ENST00000344922|MIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	631.3269653320312	2	630.82716	1259.63977	0.6696	0.0004224	0.13822	8.7191E-05	0.80782	0.00050959	630.8285484291533	50.4	0.66051	50.4	50.077	50.738	0					73	23	4	0	0	0	0.3429	1	11658	11658		18.373	1.2602	1	834780			15834	5120	8919	8920	20083	20083					0.02033345123777508
IQTQPRAL	8	Unmodified	_IQTQPRAL_					0	0	0		ENST00000514254.2_1_12:124412777-124412945:-|nuORF	ENST00000514254.2_1_12:124412777-124412945:-|nuORF	ENST00000514254.2_1_12:124412777-124412945:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.79266357421875	2	463.774534	925.534515	-0.17453	-8.0941E-05	0.5339	0.00024761	0.35937	0.00016667	463.774788359834	25.952	0.31492	25.952	25.846	26.161	0					16	10	2	0	0	0	0.34117	1	4196	4196		9.3831	0	1	85497			15835	11414	8920	8921	20084	20084					0.06876893508649573
IQTQPRAL	8	Unmodified	_IQTQPRAL_					0	0	0		ENST00000514254.2_1_12:124412777-124412945:-|nuORF	ENST00000514254.2_1_12:124412777-124412945:-|nuORF	ENST00000514254.2_1_12:124412777-124412945:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.792724609375	2	463.774534	925.534515	0.087636	4.0643E-05	-0.24595	-0.00011407	-0.15832	-7.3424E-05	463.77444739962226	26.034	0.3446	26.012	25.867	26.212	-0.022236					17	12	2	0	0	0	0.34117	1	4202	4202		9.3831	0	1	74725			15836	11414	8920	8921	20085	20085					0.06876893508649573
IQVLARRKS	9	Unmodified	_IQVLARRKS_					0	0	0		ENST00000525312.1_1_11:12886306-12886516:+|nuORF;nc|ENSG00000187079|P28347-2|TEAD1;ENSG00000187079|ENST00000527636|TEAD1;nc|ENSG00000074219|Q15562|TEAD2;nc|ENSG00000074219|Q15562-2|TEAD2;ENSG00000074219|ENST00000593945|TEAD2	ENST00000525312.1_1_11:12886306-12886516:+|nuORF	ENST00000525312.1_1_11:12886306-12886516:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.770751953125	2	535.843282	1069.67201	0.78118	0.00041859	3.3234	0.0017808	4.1046	0.0021994	535.844823405545	47.248	0.38708	47.248	47.053	47.44	0					22	13	2	0	0	0	0.24848	1	10727	10727		5.7319	2.4505	1	268360			15837	11537	8921	8922	20086	20086					0.13996222108062284
IQVLHAFVEL	10	Unmodified	_IQVLHAFVEL_					0	0	0		ENST00000591574.5_1_17:76677122-76698292:-|nuORF;nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1	ENST00000591574.5_1_17:76677122-76698292:-|nuORF	ENST00000591574.5_1_17:76677122-76698292:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.2879638671875	2	584.839874	1167.66519	0.24977	0.00014608	-1.1742	-0.00068673	-0.92444	-0.00054065	584.8392987281627	57.749	0.75	57.732	57.497	58.247	-0.0172					46	27	3	0	0	0	0.29038	1	14091	14091		18.146	3.3081	1	1037400			15838	2206	8922	8923	20087	20087					0.08806864436837714
IQYMRRMY	8	Unmodified	_IQYMRRMY_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;ENST00000484626.1_1_6:7404210-7405259:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.7882080078125	2	580.788804	1159.56305	0.13226	7.6812E-05	-0.37717	-0.00021905	-0.24491	-0.00014224	580.7883333659124	26.18	0.35693	26.142	25.985	26.342	-0.038671					21	12	2	0	0	0	0.43043	1	4292	4292		12.532	1.0368	1	112480			15839	3181	8923	8924	20088	20088					-0.010344481780521164
IQYMRRMY	8	Unmodified	_IQYMRRMY_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;ENST00000484626.1_1_6:7404210-7405259:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2656860351562	2	580.788804	1159.56305	0.31989	0.00018579	-0.60018	-0.00034858	-0.28029	-0.00016279	580.7884750938456	26.284	0.36649	26.262	26.073	26.439	-0.022238					19	12	2	0	0	0	0.34353	1	4275	4275		4.756	0.42677	1	92904			15840	3181	8923	8924	20089	20089					-0.010344481780521164
IQYMRRMY	8	Unmodified	_IQYMRRMY_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;ENST00000484626.1_1_6:7404210-7405259:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	580.788804	1159.56305	0.12902	7.4934E-05	-0.37125	-0.00021562	-0.24223	-0.00014069	580.7882678775762	26.134	0.31516	26.134	25.981	26.296	0	-0.045355	9.3017E-05	NaN	4.756	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90645			15841	3181	8923	8924							-0.010344481780521164
IQYNVRAFMN	10	Unmodified	_IQYNVRAFMN_					0	0	0		ENSG00000133020|ENST00000403437|MYH8;ENSG00000109061|ENST00000226207|MYH1	ENSG00000133020|ENST00000403437|MYH8	ENSG00000133020|ENST00000403437|MYH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.56451416015625	3	419.213252	1254.61793	0.43902	0.00018404	2.0324	0.00085202	2.4714	0.0010361	419.2146882354817	32.197	0.24696	32.243	32.087	32.334	0.04541					13	8	2	0	0	0	0.32051	1	6127	6127		0.69767	0	1	78893			15842	2229	8924	8925	20090	20090					0.0008026189420888841
IRAEYQRR	8	Unmodified	_IRAEYQRR_					0	0	0			REV__ENSG00000166813|ENST00000394412|KIF7	REV__ENSG00000166813|ENST00000394412|KIF7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.9137573242188	2	546.307064	1090.59957	0.86666	0.00047346	-2.3578	-0.0012881	-1.4911	-0.00081461	546.8068516841844	20.297	0.78885	20.244	19.906	20.695	-0.052912					60	28	3	0	0	0	0.34272	1	2444	2444		7.9102	1.187	1	188990	+		15843	17341	8925	8926	20091	20091					0.05789888034496471
IRAKNKINK	9	Unmodified	_IRAKNKINK_					0	0	0			REV__ENSG00000131437|ENST00000403231|KIF3A	REV__ENSG00000131437|ENST00000403231|KIF3A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8522338867188	2	542.851107	1083.68766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.957	1	13.957	13.457	14.457	0								0	0	0	0.2362	1	580	580		10.824	0	1		+		15844	15513	8926	8927	20092	20092					0.149165086251287
IRCAPLLSF	9	Unmodified	_IRCAPLLSF_					0	0	0			REV__ENST00000399300.6_1_8:94745166-94745250:-|nuORF	REV__ENST00000399300.6_1_8:94745166-94745250:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2825622558594	2	510.288963	1018.56337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.091	1	89.09	88.59	89.59	-0.00080872								0	0	0	0.22377	1	23549	23549		14.838	1.3304	1		+		15845	20689	8927	8928	20093	20093					0.05483294813450357
IRDRNWYV	8	Unmodified	_IRDRNWYV_					0	0	0		ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	ENSG00000165527|ENST00000298316|ARF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.77783203125	2	561.296165	1120.57778	0.46697	0.00026211	-1.7867	-0.0010029	-1.3197	-0.00074075	561.7946782406858	66.34	0.91032	66.424	65.916	66.826	0.083832					64	32	3	0	0	0	0.34039	1	16469	16469		15.847	9.124	1	234110			15846	5974	8928	8929	20094	20094					0.022310832859375296
IREEAVLFL	9	Unmodified	_IREEAVLFL_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.316650390625	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.46	1	117.43	116.93	117.93	-0.024147								0	0	0	0.264	1	30401	30401		1.8442	0	1				15847	1866	8929	8930	20095	20095					0.08222889028479585
IRFCYVHKQL	10	Unmodified	_IRFCYVHKQL_					0	0	0			REV__ENST00000557184.1_1_14:54976944-54997777:+|nuORF	REV__ENST00000557184.1_1_14:54976944-54997777:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.24102783203125	3	436.241142	1305.7016	-0.37398	-0.00016314	0.07391	3.2242E-05	-0.30007	-0.0001309	436.24123157694186	13.894	0.85465	13.828	13.494	14.349	-0.066067					57	29	4	0	0	0	0.324	1	551	551		17.443	2.4855	1	694310	+		15848	14207	8930	8931	20096	20096					0.06097418061904136
IRFCYVHKQL	10	Unmodified	_IRFCYVHKQL_					0	0	0			REV__ENST00000557184.1_1_14:54976944-54997777:+|nuORF	REV__ENST00000557184.1_1_14:54976944-54997777:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	436.241142	1305.7016	-0.36239	-0.00015809	0.028838	1.258E-05	-0.33355	-0.00014551	436.241207882515	13.777	0.42685	13.777	13.597	14.024	0	-0.019977	-2.8367E-05	NaN	17.443	39	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	624940	+		15849	14207	8930	8931							0.06097418061904136
IRFCYVHKQL	10	Unmodified	_IRFCYVHKQL_					0	0	0			REV__ENST00000557184.1_1_14:54976944-54997777:+|nuORF	REV__ENST00000557184.1_1_14:54976944-54997777:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	436.241142	1305.7016	-0.36019	-0.00015713	0.053825	2.3481E-05	-0.30637	-0.00013365	436.24120449666907	13.89	0.53667	13.786	13.568	14.105	-0.10466	-0.011034	4.3352E-06	NaN	17.443	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	588190	+		15850	14207	8930	8931							0.06097418061904136
IRFCYVHKQL	10	Unmodified	_IRFCYVHKQL_					0	0	0			REV__ENST00000557184.1_1_14:54976944-54997777:+|nuORF	REV__ENST00000557184.1_1_14:54976944-54997777:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	436.241142	1305.7016	-0.37398	-0.00016314	0.07391	3.2242E-05	-0.30007	-0.0001309	436.24123157694186	13.894	0.85465	13.828	13.494	14.349	-0.066067	0.031011	3.062E-05	NaN	17.443	57	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	694310	+		15851	14207	8930	8931							0.06097418061904136
IRFLRRCVLAP	11	Unmodified	_IRFLRRCVLAP_					0	0	0		ENST00000565877.5_1_16:89284121-89284316:+|nuORF;ENST00000433976.6_1_16:89284121-89287408:+|nuORF;ENST00000564906.5_2_16:89284121-89287460:+|nuORF	ENST00000565877.5_1_16:89284121-89284316:+|nuORF	ENST00000565877.5_1_16:89284121-89284316:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.6082458496094	3	448.607936	1342.80198	0.35393	0.00015878	0.40151	0.00018012	0.75544	0.0003389	448.60814547293876	87.48	2.5537	87.474	85.826	88.379	-0.0056229					336	115	4	0	0	0	0.47545	1	23028	23028		1.3296	1.3296	1	1141000			15852	10495	8931	8932	20097	20097					0.1442907511559497
IRFLVLQLT	9	Unmodified	_IRFLVLQLT_					0	0	0			REV__nc|ENSG00000105778|Q8NBF6-2|AVL9	REV__nc|ENSG00000105778|Q8NBF6-2|AVL9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2578125	2	551.852784	1101.69102	0.15584	8.6002E-05	-0.73206	-0.00040399	-0.57622	-0.00031799	551.8523175952116	65.465	0.16865	65.554	65.46	65.628	0.088882					8	5	2	0	0	0	0.25779	1	16301	16301		6.2058	0.97511	1	87213	+		15853	22928	8932	8933	20098	20098					0.14423758679117782
IRFTWNAPS	9	Unmodified	_IRFTWNAPS_					0	0	0		ENST00000479356.1_1_17:71354047-71433905:-|nuORF;nc|ENSG00000069188|Q58EX2-2|SDK2;nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2	ENST00000479356.1_1_17:71354047-71433905:-|nuORF	ENST00000479356.1_1_17:71354047-71433905:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8309326171875	2	546.285266	1090.55598	0.56637	0.0003094	0.40384	0.00022061	0.97021	0.00053001	546.2854989769332	28.995	0.50336	29.007	28.769	29.272	0.012266					32	17	3	0	0	0	0.25323	1	5108	5108		10.074	3.3508	1	219210			15854	900	8933	8934	20099	20099					0.014322785373678926
IRGPVWSVLL	10	Unmodified	_IRGPVWSVLL_					0	0	0		ENSG00000129204|ENST00000574788|USP6;ENST00000357482.5_1_17:5035679-5037292:+|nuORF;nc|ENSG00000129204|P35125-3|USP6	ENSG00000129204|ENST00000574788|USP6	ENSG00000129204|ENST00000574788|USP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3106689453125	2	570.350409	1138.68626	0.21213	0.00012099	-0.35623	-0.00020318	-0.1441	-8.2185E-05	570.3500265956229	67.32	0.23343	67.32	67.165	67.398	0					11	7	2	0	0	0	0.31847	1	16902	16902		6.7232	1.9672	1	80645			15855	3415	8934	8935	20100	20100					0.12246874536390351
IRGVVPWTL	9	Unmodified	_IRGVVPWTL_					0	0	0			REV__ENSG00000255307|ENST00000530810|OR52B2	REV__ENSG00000255307|ENST00000530810|OR52B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2100219726562	2	520.816202	1039.61785	0.1893	9.8591E-05	-0.81456	-0.00042423	-0.62525	-0.00032564	520.8156864516114	23.034	0.23505	23.034	22.875	23.11	0					10	7	2	0	0	0	0.25706	1	3295	3295		6.7232	2.3939	1	38350	+		15856	19243	8935	8936	20101	20101					0.09962629956521596
IRHATVSGVRV	11	Unmodified	_IRHATVSGVRV_					0	0	0		ENST00000466618.1_1_2:242002912-242027813:+|nuORF;nc|ENSG00000162804|Q8TER0-5|SNED1;nc|ENSG00000162804|Q8TER0-3|SNED1;nc|ENSG00000162804|Q8TER0-4|SNED1;ENSG00000162804|ENST00000310397|SNED1	ENST00000466618.1_1_2:242002912-242027813:+|nuORF	ENST00000466618.1_1_2:242002912-242027813:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8551025390625	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.725	1	96.72	96.22	97.22	-0.0055466								0	0	0	0.36335	1	25874	25874		5.2969	1.7004	1				15857	5620	8936	8937	20102	20102					0.11018705648461946
IRHDTVRNQ	9	Unmodified	_IRHDTVRNQ_					0	0	0			REV__nc|ENSG00000112031|Q9UGC7-3|MTRF1L	REV__nc|ENSG00000112031|Q9UGC7-3|MTRF1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.8359985351562	2	569.807428	1137.6003	-0.09019	-5.1391E-05	0.58355	0.00033251	0.49336	0.00028112	569.8080779559494	13.239	0.21826	13.239	13.147	13.365	0					13	7	2	0	0	0	0.25843	1	379	379		2.9952	0	1	73203	+		15858	14749	8937	8938	20103	20103					0.03700682683552259
IRHIHSEI	8	Unmodified	_IRHIHSEI_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7869567871094	2	502.785433	1003.55631	0.56799	0.00028558	1.1395	0.0005729	1.7074	0.00085848	502.7865435502477	84.725	1.1447	84.725	84.137	85.282	0					85	43	3	0	0	0	0.33441	1	22211	22211		26.884	0	1	391800	+		15859	14730	8938	8939	20104	20104					0.05467698257234588
IRHRKMRESL	10	Unmodified	_IRHRKMRESL_					0	0	0		ENST00000495954.5_1_3:159557968-159614560:+|nuORF	ENST00000495954.5_1_3:159557968-159614560:+|nuORF	ENST00000495954.5_1_3:159557968-159614560:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.93975830078125	3	442.590945	1324.75101	0.1526	6.7541E-05	-1.4416	-0.00063804	-1.289	-0.0005705	442.59039925977265	49.703	0.15938	49.723	49.617	49.776	0.020695					6	5	2	0	0	0	0.31911	1	11454	11454		1.9064	0	1	77787			15860	11225	8939	8940	20105	20105					0.10162126070713384
IRILYLTMFL	10	Unmodified	_IRILYLTMFL_					0	0	0		ENST00000505284.5_1_4:128842916-128886288:-|nuORF;ENST00000515130.5_1_4:128842916-128886236:-|nuORF;MFSD8|p.Q474Kfs*18|1|0.09|ENSG00000164073|chr4:127920767-127920767|G/-|frameshift_variant;ENSG00000164073|ENST00000641686|MFSD8	ENST00000505284.5_1_4:128842916-128886288:-|nuORF	ENST00000505284.5_1_4:128842916-128886288:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8605346679688	2	641.883227	1281.7519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.65	1	104.65	104.15	105.15	0.0018463								0	0	0	0.37739	1	27785	27785		3.2813	0.78282	1				15861	5780	8940	8941	20106	20106					0.12229527667045659
IRKAAKREL	9	Unmodified	_IRKAAKREL_					0	0	0		ENSG00000171163|ENST00000306601|ZNF692;nc|ENSG00000171163|Q9BU19-5|ZNF692;nc|ENSG00000171163|Q9BU19-3|ZNF692;nc|ENSG00000171163|Q9BU19-2|ZNF692;ENST00000470787.6_1_1:249144674-249149911:-|nuORF;ENST00000533927.5_1_1:249144411-249149911:-|nuORF	ENSG00000171163|ENST00000306601|ZNF692	ENSG00000171163|ENST00000306601|ZNF692	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.85205078125	2	542.851107	1083.68766	0.22695	0.0001232	0.38199	0.00020737	0.60894	0.00033056	542.8516359604893	13.98	0.32232	13.914	13.747	14.07	-0.066068					27	10	4	0	0	0	0.30064	1	605	605		8.7454	1.4562	1	149660			15862	6520	8941	8942	20107	20107					0.14916508625105962
IRKDPASI	8	Unmodified	_IRKDPASI_					0	0	0			REV__ENSG00000005020|ENST00000345317|SKAP2	REV__ENSG00000005020|ENST00000345317|SKAP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2699279785156	2	450.269084	898.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.455	1	76.424	75.924	76.924	-0.031487								0	0	0	0.35014	1	19678	19678		14.582	2.0501	1		+		15863	13339	8942	8943	20108	20108					0.07029491134358068
IRKEITKI	8	Unmodified	_IRKEITKI_					0	0	0		L1PBa_dup1914|chr16:20454552-20458311:+|1.873729371871474|0.2397336971051269|2.97|524.0|61|2|sense	L1PBa_dup1914|chr16:20454552-20458311:+|1.873729371871474|0.2397336971051269|2.97|524.0|61|2|sense	L1PBa_dup1914|chr16:20454552-20458311:+|1.873729371871474|0.2397336971051269|2.97|524.0|61|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8293151855469	2	500.829309	999.644065	0.34159	0.00017108	-0.53313	-0.00026701	-0.19154	-9.5927E-05	500.82894071708176	38.282	0.85649	38.379	38.064	38.921	0.097527					83	30	4	0	0	0	0.16257	1	7923	7923		49.554	1.9599	1	1917300			15864	12499	8943	8944	20109	20109					0.14422899127964683
IRKKLGGANK	10	Unmodified	_IRKKLGGANK_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8518676757812	2	542.851107	1083.68766	0.18209	9.8846E-05	0.6832	0.00037088	0.86529	0.00046972	542.8514047478318	14.023	0.23289	13.918	13.816	14.049	-0.10466					12	7	2	0	0	0	0.34795	1	614	614		13.042	2.2185	1	118740			15865	983	8944	8945	20110	20110					0.14916508625105962
IRKKLGGANK	10	Unmodified	_IRKKLGGANK_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8506469726562	2	542.851107	1083.68766	0.22695	0.0001232	0.38199	0.00020737	0.60894	0.00033056	542.8516359604893	13.98	0.32232	13.914	13.747	14.07	-0.066068					27	10	4	0	0	0	0.34795	1	599	599		13.042	2.2185	1	149660			15866	983	8944	8945	20111	20111					0.14916508625105962
IRKPYIWEY	9	Unmodified	_IRKPYIWEY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3456420898438	2	634.345323	1266.67609	0.49474	0.00031384	-0.060097	-3.8122E-05	0.43465	0.00027572	634.3453333077208	48.512	0.65061	48.512	48.205	48.856	0					48	22	3	0	0	0	0.03069	1	11144	11144		60.074	30.233	1	924260			15867	3985	8945	8946	20112	20112					0.05342266811112495
IRKPYIWEY	9	Unmodified	_IRKPYIWEY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3455810546875	2	634.345323	1266.67609	0.79046	0.00050142	-0.182	-0.00011545	0.60846	0.00038597	634.3451888528656	48.481	0.62224	48.528	48.204	48.826	0.047523					54	22	3	0	0	0	0.010453	1	11103	11103		78.728	45.942	1	791500			15868	3985	8945	8946	20113	20113					0.05342266811112495
IRKPYIWEY	9	Unmodified	_IRKPYIWEY_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	634.345323	1266.67609	0.72164	0.00045777	-0.1401	-8.8871E-05	0.58154	0.0003689	634.3452752074962	48.386	0.58629	48.43	48.168	48.754	0.04332	-0.060383	-1.4184E-05	NaN	78.728	53	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	872660			15869	3985	8945	8946							0.05342266811112495
IRKRKHAEKI	10	Unmodified	_IRKRKHAEKI_					0	0	0			REV__ENSG00000108239|ENST00000225235|TBC1D12	REV__ENSG00000108239|ENST00000225235|TBC1D12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.9419250488281	3	426.942084	1277.80442	-0.019299	-8.2396E-06	-0.27445	-0.00011717	-0.29375	-0.00012541	426.94206110226315	37.484	1.5871	37.572	37.193	38.78	0.087406					185	57	5	0	0	0	0.30656	1	7839	7839		19.626	1.2529	1	9992500	+		15870	14585	8946	8947	20114	20114					0.17663246844881542
IRLAFVIV	8	Unmodified	_IRLAFVIV_					0	0	0		ENSG00000146205|ENST00000674324|ANO7;nc|ENSG00000146205|Q6IWH7-3|ANO7;nc|ENSG00000146205|Q6IWH7|ANO7	ENSG00000146205|ENST00000674324|ANO7	ENSG00000146205|ENST00000674324|ANO7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7774963378906	2	465.810388	929.606223	-0.024721	-1.1515E-05	-0.39851	-0.00018563	-0.42323	-0.00019714	465.8101556409187	72.962	0.30138	73.016	72.898	73.2	0.053841					17	10	2	0	0	0	0.34247	1	18630	18630		8.5933	0	1	77770			15871	4698	8947	8948	20115	20115					0.1386043293318835
IRLSSGPRLA	10	Unmodified	_IRLSSGPRLA_					0	0	0			REV__ENSG00000239697|ENST00000293825|TNFSF12	REV__ENSG00000239697|ENST00000293825|TNFSF12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.3278198242188	2	535.327465	1068.64038	0.33512	0.0001794	0.32544	0.00017422	0.66055	0.00035361	535.3275493313588	28.988	1.0346	29	28.769	29.803	0.012266					101	35	4	0	0	0	0.3001	1	5213	5213		20.415	0	1	1376400	+		15872	19163	8948	8949	20116	20116					0.10880229354143012
IRLVEKVVYE	10	Unmodified	_IRLVEKVVYE_					0	0	0			REV__ENSG00000118898|ENST00000345988|PPL	REV__ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.8745727539062	2	624.371538	1246.72852	-0.020231	-1.2632E-05	1.5248	0.00095205	1.5046	0.00093941	624.3721950812269	98.273	0.2373	98.273	98.131	98.368	0					40	27	2	0	0	0	0.41085	1	26268	26268		1.4819	0	1	257370	+		15873	15023	8949	8950	20117	20117					0.11502805154100315
IRLVPYRCR	9	Unmodified	_IRLVPYRCR_					0	0	0			REV__ENSG00000175809|ENST00000323684|CBLL2	REV__ENSG00000175809|ENST00000323684|CBLL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.3453369140625	2	588.345135	1174.67572	-0.0044434	-2.6142E-06	-0.1003	-5.901E-05	-0.10474	-6.1624E-05	588.3458112150524	13.044	0.28318	12.945	12.814	13.097	-0.099291					21	9	3	0	0	0	0.26257	1	331	331		0.52476	0	1	63664	+		15874	17911	8950	8951	20118	20118					0.09536568610292306
IRLVPYRCR	9	Unmodified	_IRLVPYRCR_					0	0	0			REV__ENSG00000175809|ENST00000323684|CBLL2	REV__ENSG00000175809|ENST00000323684|CBLL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	588.345135	1174.67572	0.027433	1.614E-05	0.99315	0.00058432	1.0206	0.00060046	588.3454180621487	12.989	0.32684	12.989	12.874	13.2	0	0.044215	0.00079774	NaN	0.52476	29	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66952	+		15875	17911	8950	8951							0.09536568610292306
IRNTVVMRRL	10	Unmodified	_IRNTVVMRRL_					0	0	0		Tigger6a_dup51|chr2:34785001-34785808:+|2.105089876760541|0.2357752546398106|3.16|529.0|15|2|sense	Tigger6a_dup51|chr2:34785001-34785808:+|2.105089876760541|0.2357752546398106|3.16|529.0|15|2|sense	Tigger6a_dup51|chr2:34785001-34785808:+|2.105089876760541|0.2357752546398106|3.16|529.0|15|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.3824462890625	2	629.382249	1256.74994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.55	1	118.52	118.02	119.02	-0.024147								0	0	0	0.38166	1	30638	30638		1.4819	0.15237	1				15876	23397	8951	8952	20119	20119					0.1318391170182167
IRPENVIIY	9	Unmodified	_IRPENVIIY_					0	0	0		ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8240966796875	2	558.824224	1115.63389	0.37466	0.00020937	-0.50053	-0.00027971	-0.12587	-7.0338E-05	558.8238206672563	52.1	0.92228	52.15	51.926	52.848	0.050575					61	33	3	0	0	0	0.05341	1	12257	12257		51.63	20.993	1	1297100			15877	2122	8952	8953	20120	20120					0.08070291402759722
IRPENVIIY	9	Unmodified	_IRPENVIIY_					0	0	0		ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	ENSG00000107362|ENST00000333421|ABHD17B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.8240356445312	2	558.824224	1115.63389	0.089823	5.0195E-05	-0.29049	-0.00016233	-0.20067	-0.00011214	558.8239508374983	52.268	1.0309	52.267	52.008	53.039	-0.00080872					66	37	3	0	0	0	0.058995	1	12232	12232		49.554	18.918	1	1345400			15878	2122	8952	8953	20121	20121					0.08070291402759722
IRPGTAFEL	9	Unmodified	_IRPGTAFEL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.28253173828125	2	502.282192	1002.54983	0.71187	0.00035756	-0.12765	-6.4118E-05	0.58422	0.00029344	502.28214136984366	50.847	1.0473	50.847	50.489	51.536	0					126	38	5	0	0	0	0.0073901	2	11842	11842;11891		83.429	35.083	1	4867200			15879	12859	8953	8954	20122;20123	20122					0.0486576030583592
IRPGTAFEL	9	Unmodified	_IRPGTAFEL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.282470703125	2	502.282192	1002.54983	0.59535	0.00029903	-0.053162	-2.6702E-05	0.54218	0.00027233	502.282154380269	50.811	1.4068	50.857	50.463	51.87	0.046577					152	51	5	0	0	0	0.044188	1	11829	11829		76.825	34.73	1	4970100			15880	12859	8953	8954	20124	20124					0.0486576030583592
IRPGTAFEL	9	Unmodified	_IRPGTAFEL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2824401855469	2	502.282192	1002.54983	0.64747	0.00032521	-0.0059565	-2.9918E-06	0.64151	0.00032222	502.28218892095254	50.91	0.99241	50.919	50.541	51.533	0.0095634					124	37	5	0	0	0	0.082647	1	11860	11860		61.602	19.507	1	5039200			15881	12859	8953	8954	20125	20125					0.0486576030583592
IRPNIILVL	9	Unmodified	_IRPNIILVL_					0	0	0		ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2;ENST00000463221.2_1_20:46318868-46386107:-|nuORF;ENSG00000137573|ENST00000402687|SULF1	ENSG00000196562|ENST00000688720|SULF2;ENSG00000137573|ENST00000402687|SULF1	ENSG00000196562|ENST00000688720|SULF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.85546875	2	525.855327	1049.6961	0.5336	0.0002806	-0.052987	-2.7864E-05	0.48062	0.00025273	525.8552252307987	70.486	0.99501	70.486	70.103	71.098	0					95	35	4	0	0	0	0.037693	3	17873	17827;17873;17919		57.471	11.45	1	3091400			15882	7880;4061	8954	8955	20126;20127;20128	20127					0.17324062541752028
IRPNIILVL	9	Unmodified	_IRPNIILVL_					0	0	0		ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2;ENST00000463221.2_1_20:46318868-46386107:-|nuORF;ENSG00000137573|ENST00000402687|SULF1	ENSG00000196562|ENST00000688720|SULF2;ENSG00000137573|ENST00000402687|SULF1	ENSG00000196562|ENST00000688720|SULF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8552856445312	2	525.855327	1049.6961	0.48837	0.00025681	-0.039971	-2.1019E-05	0.44839	0.00023579	525.8552325735159	70.409	0.93726	70.47	70.155	71.092	0.060783					101	33	4	0	0	0	0.062246	3	17808	17808;17851;17906		48.346	10.372	1	3426700			15883	7880;4061	8954	8955	20129;20130;20131	20129					0.17324062541752028
IRPNIILVL	9	Unmodified	_IRPNIILVL_					0	0	0		ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2;ENST00000463221.2_1_20:46318868-46386107:-|nuORF;ENSG00000137573|ENST00000402687|SULF1	ENSG00000196562|ENST00000688720|SULF2;ENSG00000137573|ENST00000402687|SULF1	ENSG00000196562|ENST00000688720|SULF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8553466796875	2	525.855327	1049.6961	0.56637	0.00029783	-0.060816	-3.1981E-05	0.50555	0.00026585	525.8552147485838	70.475	1.0273	70.45	70.16	71.188	-0.024872					98	36	4	0	0	0	0.062246	3	17824	17824;17868;17917		48.346	10.372	1	2655600			15884	7880;4061	8954	8955	20132;20133;20134	20132					0.17324062541752028
IRPNYIDIY	9	Unmodified	_IRPNYIDIY_					0	0	0		PCSK6|p.G336Afs*99|1|0.4|ENSG00000140479|chr15:101393414-101393414|C/-|frameshift_variant;nc|ENSG00000140479|P29122-3|PCSK6;nc|ENSG00000140479|P29122-6|PCSK6;nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6	PCSK6|p.G336Afs*99|1|0.4|ENSG00000140479|chr15:101393414-101393414|C/-|frameshift_variant	PCSK6|p.G336Afs*99|1|0.4|ENSG00000140479|chr15:101393414-101393414|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3297729492188	2	583.813856	1165.61316	0.56674	0.00033087	0.34223	0.0001998	0.90897	0.00053067	583.8139371337579	54.164	0.79272	54.164	53.858	54.651	0					66	28	4	0	0	0	0.012929	3	12883	12836;12883;12934		74.929	22.661	1	1145200			15885	4308	8955	8956	20135;20136;20137	20136					0.03697701023111222
IRPNYIDIY	9	Unmodified	_IRPNYIDIY_					0	0	0		PCSK6|p.G336Afs*99|1|0.4|ENSG00000140479|chr15:101393414-101393414|C/-|frameshift_variant;nc|ENSG00000140479|P29122-3|PCSK6;nc|ENSG00000140479|P29122-6|PCSK6;nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6	PCSK6|p.G336Afs*99|1|0.4|ENSG00000140479|chr15:101393414-101393414|C/-|frameshift_variant	PCSK6|p.G336Afs*99|1|0.4|ENSG00000140479|chr15:101393414-101393414|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3294677734375	2	583.813856	1165.61316	0.42178	0.00024624	0.41735	0.00024366	0.83913	0.0004899	583.813998372616	54.121	0.76453	54.185	53.902	54.667	0.063202					62	28	3	0	0	0	0.014888	2	12817	12817;12867		71.922	24.174	1	1202000			15886	4308	8955	8956	20138;20139	20138					0.03697701023111222
IRPNYIDIY	9	Unmodified	_IRPNYIDIY_					0	0	0		PCSK6|p.G336Afs*99|1|0.4|ENSG00000140479|chr15:101393414-101393414|C/-|frameshift_variant;nc|ENSG00000140479|P29122-3|PCSK6;nc|ENSG00000140479|P29122-6|PCSK6;nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6	PCSK6|p.G336Afs*99|1|0.4|ENSG00000140479|chr15:101393414-101393414|C/-|frameshift_variant	PCSK6|p.G336Afs*99|1|0.4|ENSG00000140479|chr15:101393414-101393414|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3296508789062	2	583.813856	1165.61316	0.53344	0.00031143	0.499	0.00029132	1.0324	0.00060275	583.8139217075222	54.346	0.97762	54.33	54.002	54.98	-0.015923					75	34	4	0	0	0	0.019245	2	12886	12886;12943		65.235	11.402	1	1318500			15887	4308	8955	8956	20140;20141	20140					0.03697701023111222
IRPQDLHLL	9	Unmodified	_IRPQDLHLL_					0	0	0		ENST00000263370.2_1_19:41246057-41246498:+|nuORF	ENST00000263370.2_1_19:41246057-41246498:+|nuORF	ENST00000263370.2_1_19:41246057-41246498:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2982788085938	2	552.82984	1103.64513	1.0281	0.00056838	2.3133	0.0012789	3.3414	0.0018472	552.8312754274085	50.387	0.41447	50.432	50.213	50.628	0.044888					21	14	2	0	0	0	0.24913	1	11630	11630		7.9102	0.62092	1	101420			15888	9006	8956	8957	20142	20142					0.09745113496887825
IRPRSRFVFK	10	Unmodified	_IRPRSRFVFK_					0	0	0		ENST00000438998.6_1_6:3267950-3268064:+|nuORF	ENST00000438998.6_1_6:3267950-3268064:+|nuORF	ENST00000438998.6_1_6:3267950-3268064:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.9347839355469	3	435.934929	1304.78296	-0.26753	-0.00011663	-0.11555	-5.0373E-05	-0.38308	-0.000167	435.93481696853127	27.486	0.97327	27.486	27.121	28.094	0					85	33	3	0	0	0	0.4022	1	4682	4682		3.0723	3.0723	1	313300			15889	10541	8957	8958	20143	20143					0.14275861816145152
IRPRSRFVFK	10	Unmodified	_IRPRSRFVFK_					0	0	0		ENST00000438998.6_1_6:3267950-3268064:+|nuORF	ENST00000438998.6_1_6:3267950-3268064:+|nuORF	ENST00000438998.6_1_6:3267950-3268064:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	435.934929	1304.78296	-0.26753	-0.00011663	-0.11555	-5.0373E-05	-0.38308	-0.000167	435.93481696853127	27.486	0.97327	27.486	27.121	28.094	0	-0.013121	1.5292E-05	NaN	3.0723	85	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313300			15890	10541	8957	8958							0.14275861816145152
IRPRSRFVFK	10	Unmodified	_IRPRSRFVFK_					0	0	0		ENST00000438998.6_1_6:3267950-3268064:+|nuORF	ENST00000438998.6_1_6:3267950-3268064:+|nuORF	ENST00000438998.6_1_6:3267950-3268064:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	435.934929	1304.78296	-0.34158	-0.0001489	-0.090503	-3.9453E-05	-0.43208	-0.00018836	435.93487876727687	27.547	1.0168	27.535	27.187	28.203	-0.01156	0.036225	4.8052E-05	NaN	3.0723	95	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340760			15891	10541	8957	8958							0.14275861816145152
IRQHPPYLLF	10	Unmodified	_IRQHPPYLLF_					0	0	0			REV__ENST00000603475.1_1_9:90584039-90584273:-|nuORF	REV__ENST00000603475.1_1_9:90584039-90584273:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.58001708984375	3	428.580152	1282.71863	-0.018184	-7.7933E-06	-0.13741	-5.8893E-05	-0.1556	-6.6686E-05	428.580049715489	57.048	1.5156	57.029	56.7	58.216	-0.019081					165	55	4	0	0	0	0.31867	1	13742	13742		11.518	3.0736	1	3683700	+		15892	16743	8958	8959	20144	20144					0.08857661939350692
IRQIIPPGF	9	Unmodified	_IRQIIPPGF_					0	0	0		nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1	nc|ENSG00000128708|O14929-2|HAT1	nc|ENSG00000128708|O14929-2|HAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2102661132812	2	520.816202	1039.61785	0.16914	8.8089E-05	-0.081551	-4.2473E-05	0.087585	4.5616E-05	520.8162476447523	23.123	0.28535	23.035	22.853	23.138	-0.087608					12	9	2	0	0	0	0.25879	1	3351	3351		4.756	0.81161	1	38670			15893	3387	8959	8960	20145	20145					0.09962629956521596
IRQPTVGVTQ	10	Unmodified	_IRQPTVGVTQ_					0	0	0			REV__nc|ENSG00000106410|O60393-2|NOBOX	REV__nc|ENSG00000106410|O60393-2|NOBOX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.8170776367188	2	549.81693	1097.61931	0.5872	0.00032285	-0.45185	-0.00024844	0.13535	7.4416E-05	549.8166240039728	21.513	0.72929	21.412	21.188	21.917	-0.10034					55	25	3	0	0	0	0.38522	1	2913	2913		6.1918	0.46	1	237070	+		15894	14520	8960	8961	20146	20146					0.07440219254635849
IRRAPRRRM	9	Unmodified	_IRRAPRRRM_					0	0	0			REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3709106445312	2	606.372549	1210.73055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.12	1	116.14	115.64	116.64	0.020988								0	0	0	0.2672	1	30136	30136		0.52476	0	1		+		15895	16081	8961	8962	20147	20147					0.13361000201552997
IRRCRRLIVI	10	Unmodified	_IRRCRRLIVI_					0	0	0		ENSG00000131459|ENST00000253778|GFPT2	ENSG00000131459|ENST00000253778|GFPT2	ENSG00000131459|ENST00000253778|GFPT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5959777832031	3	433.283564	1296.82886	0.0026422	1.1448E-06	-0.7709	-0.00033402	-0.76825	-0.00033287	433.2831562195343	43.686	0.61228	43.77	43.463	44.075	0.083996					46	22	3	0	0	0	0.31942	1	9630	9630		6.1918	0	1	680450			15896	3566	8962	8963	20148	20148					0.19232183726740004
IRREYAEMQ	9	Unmodified	_IRREYAEMQ_					0	0	0			REV__ENSG00000198752|ENST00000361246|CDC42BPB	REV__ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.2982788085938	2	598.298047	1194.58154	0.49144	0.00029403	-0.05132	-3.0705E-05	0.44012	0.00026332	598.297959704898	24.209	0.59104	24.136	23.852	24.443	-0.072559					45	19	3	0	0	0	0.33508	1	3715	3715		3.5965	0	1	125060	+		15897	18854	8963	8964	20149	20149					-0.007966150025367824
IRREYAEMQ	9	Unmodified	_IRREYAEMQ_					0	0	0			REV__ENSG00000198752|ENST00000361246|CDC42BPB	REV__ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	598.298047	1194.58154	0.49144	0.00029403	-0.05132	-3.0705E-05	0.44012	0.00026332	598.297959704898	24.209	0.59104	24.136	23.852	24.443	-0.072559	0.026565	-2.4761E-05	NaN	3.5965	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125060	+		15898	18854	8963	8964							-0.007966150025367824
IRREYAEMQ	9	Unmodified	_IRREYAEMQ_					0	0	0			REV__ENSG00000198752|ENST00000361246|CDC42BPB	REV__ENSG00000198752|ENST00000361246|CDC42BPB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	598.298047	1194.58154	0.33916	0.00020292	-0.0079798	-4.7743E-06	0.33118	0.00019815	598.2980153320509	24.237	0.6247	24.198	23.939	24.563	-0.038927	0.08824	2.71E-05	NaN	3.5965	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131580	+		15899	18854	8963	8964							-0.007966150025367824
IRRLICIMHL	10	Unmodified	_IRRLICIMHL_					0	0	0			REV__ENST00000544844.5_1_11:64085187-64085430:-|nuORF	REV__ENST00000544844.5_1_11:64085187-64085430:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.378662109375	2	634.37812	1266.74169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.04	1	112.03	111.53	112.53	-0.015625								0	0	0	0.38201	1	29148	29148		0.45834	0	1		+		15900	22161	8964	8965	20150	20150					0.11898641460857107
IRRLSRYFL	9	Unmodified	_IRRLSRYFL_					0	0	0			REV__nc|ENSG00000152784|Q9NQV8-2|PRDM8	REV__nc|ENSG00000152784|Q9NQV8-2|PRDM8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.58380126953125	3	408.583897	1222.72986	0.017475	7.1399E-06	-0.11081	-4.5274E-05	-0.093333	-3.8134E-05	408.58377301134266	49.1	0.58006	49.145	48.935	49.515	0.044891					48	20	3	0	0	0	0.2869	1	11301	11301		10.8	3.6978	1	547200	+		15901	16596	8965	8966	20151	20151					0.12740484033497523
IRRLSRYFL	9	Unmodified	_IRRLSRYFL_					0	0	0			REV__nc|ENSG00000152784|Q9NQV8-2|PRDM8	REV__nc|ENSG00000152784|Q9NQV8-2|PRDM8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	408.583897	1222.72986	0.017475	7.1399E-06	-0.11081	-4.5274E-05	-0.093333	-3.8134E-05	408.58377301134266	49.1	0.58006	49.145	48.935	49.515	0.044891	0.059567	3.7208E-05	NaN	10.8	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	547200	+		15902	16596	8965	8966							0.12740484033497523
IRRLSRYFL	9	Unmodified	_IRRLSRYFL_					0	0	0			REV__nc|ENSG00000152784|Q9NQV8-2|PRDM8	REV__nc|ENSG00000152784|Q9NQV8-2|PRDM8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	408.583897	1222.72986	-0.11691	-4.7769E-05	-0.024129	-9.8589E-06	-0.14104	-5.7628E-05	408.5837535256031	48.99	0.56227	49.022	48.878	49.441	0.032043	-0.063659	0.00014345	NaN	10.8	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350690	+		15903	16596	8965	8966							0.12740484033497523
IRRRNYFDK	9	Unmodified	_IRRRNYFDK_					0	0	0		ENSG00000139168|ENST00000266529|ZCRB1	ENSG00000139168|ENST00000266529|ZCRB1	ENSG00000139168|ENST00000266529|ZCRB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3535766601562	2	634.354545	1266.69454	0.069583	4.414E-05	-2.0684	-0.0013121	-1.9988	-0.001268	634.3534973876427	12.353	0.14923	12.285	12.196	12.345	-0.068059					7	4	2	0	0	0	0.26257	1	112	112		0.52476	0	1	32730			15904	4212	8966	8967	20152	20152					0.07185821505686363
IRRRNYFDK	9	Unmodified	_IRRRNYFDK_					0	0	0		ENSG00000139168|ENST00000266529|ZCRB1	ENSG00000139168|ENST00000266529|ZCRB1	ENSG00000139168|ENST00000266529|ZCRB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	634.354545	1266.69454	-0.01793	-1.1374E-05	-2.4016	-0.0015235	-2.4196	-0.0015349	634.3528162369736	12.317	0.22301	12.317	12.245	12.468	0	0.044223	0.00046829	NaN	0.52476	10	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30500			15905	4212	8966	8967							0.07185821505686363
IRRRNYFDK	9	Unmodified	_IRRRNYFDK_					0	0	0		ENSG00000139168|ENST00000266529|ZCRB1	ENSG00000139168|ENST00000266529|ZCRB1	ENSG00000139168|ENST00000266529|ZCRB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	634.354545	1266.69454	0.16144	0.00010241	-3.0527	-0.0019365	-2.8912	-0.0018341	634.3527858988485	12.313	0.14675	12.216	12.148	12.295	-0.096607	-0.05642	-0.00035769	NaN	0.52476	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27705			15906	4212	8966	8967							0.07185821505686363
IRSDTSFMF	9	Oxidation (M)	_IRSDTSFM(Oxidation (M))F_		IRSDTSFM(1)F		IRSDTSFM(53)F	0	0	1		ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2604370117188	2	560.260599	1118.50665	0.4532	0.00025391	-0.34487	-0.00019322	0.10833	6.0693E-05	560.2600402821286	48.562	0.67147	48.562	48.156	48.827	0					54	23	3	0	0	0	0.048637	1	11137	11137		53.404	24.322	1	825600			15907	7921	8967	8968	20153	20153		867			-0.04786797533756726
IRSDTSFMF	9	Oxidation (M)	_IRSDTSFM(Oxidation (M))F_		IRSDTSFM(1)F		IRSDTSFM(50)F	0	0	1		ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.2606201171875	2	560.260599	1118.50665	0.69179	0.00038758	-0.33201	-0.00018601	0.35978	0.00020157	560.2600295391333	48.488	0.69947	48.536	48.181	48.881	0.04752					60	25	3	0	0	0	0.058995	1	11105	11105		49.554	24.155	1	723260			15908	7921	8967	8968	20154	20154		867			-0.04786797533756726
IRSDTSFMF	9	Oxidation (M)	_IRSDTSFM(Oxidation (M))F_		IRSDTSFM(1)F		IRSDTSFM(66)F	0	0	1		ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2604370117188	2	560.260599	1118.50665	0.45696	0.00025602	-0.016569	-9.2829E-06	0.44039	0.00024674	560.2602486938446	48.384	0.82838	48.427	48.011	48.839	0.04332					60	30	3	0	0	0	0.018449	2	11044	11044;11108		66.457	34.151	1	801660			15909	7921	8967	8968	20155;20156	20155		867			-0.04786797533756726
IRSPRHEKK	9	Unmodified	_IRSPRHEKK_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8430786132812	2	575.843813	1149.67307	0.3278	0.00018876	-0.25487	-0.00014676	0.072935	4.1999E-05	575.8432300545384	89.2	0.72575	89.2	88.965	89.69	0					84	38	3	0	0	0	0.34681	1	23700	23700		1.8442	0.19162	1	212790			15910	774	8968	8969	20157	20157					0.10422436476960684
IRSPRHEKK	9	Unmodified	_IRSPRHEKK_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8432006835938	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.02	1	112.02	111.52	112.52	0								0	0	0	0.264	1	29128	29128		1.8442	0.19162	1				15911	774	8968	8969	20158	20158					0.10422436476960684
IRSPRHEKK	9	Unmodified	_IRSPRHEKK_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8429565429688	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.87	1	112.87	112.37	113.37	0								0	0	0	0.264	1	29325	29325		1.8442	0.19162	1				15912	774	8968	8969	20159	20159					0.10422436476960684
IRSPRHEKK	9	Unmodified	_IRSPRHEKK_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.843017578125	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.49	1	113.49	112.99	113.99	0								0	0	0	0.264	1	29475	29475		1.8442	0.19162	1				15913	774	8968	8969	20160	20160					0.10422436476960684
IRSPRHEKK	9	Unmodified	_IRSPRHEKK_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8434448242188	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.45	1	116.45	115.95	116.95	0								0	0	0	0.264	1	30147	30147		1.8442	0.19162	1				15914	774	8968	8969	20161	20161					0.10422436476960684
IRSPRHEKK	9	Unmodified	_IRSPRHEKK_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8428955078125	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.15	1	112.13	111.63	112.63	-0.015625								0	0	0	0.264	1	29174	29174		1.8442	0.19162	1				15915	774	8968	8969	20162	20162					0.10422436476960684
IRSPRHEKK	9	Unmodified	_IRSPRHEKK_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8428955078125	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.81	1	114.79	114.29	115.29	-0.019096								0	0	0	0.264	1	29795	29795		1.8442	0.19162	1				15916	774	8968	8969	20163	20163					0.10422436476960684
IRSPRHEKK	9	Unmodified	_IRSPRHEKK_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8428955078125	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.56	1	115.53	115.03	116.03	-0.020988								0	0	0	0.264	1	29963	29963		1.8442	0	1				15917	774	8968	8969	20164	20164					0.10422436476960684
IRSPRHEKK	9	Unmodified	_IRSPRHEKK_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8429565429688	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.81	1	115.79	115.29	116.29	-0.020988								0	0	0	0.264	1	30020	30020		1.8442	0.19162	1				15918	774	8968	8969	20165	20165					0.10422436476960684
IRSPRHEKK	9	Unmodified	_IRSPRHEKK_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8432006835938	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.43	1	114.45	113.95	114.95	0.016708								0	0	0	0.264	1	29758	29758		1.8442	0.19162	1				15919	774	8968	8969	20166	20166					0.10422436476960684
IRSPRHEKK	9	Unmodified	_IRSPRHEKK_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8427124023438	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.05	1	117.07	116.57	117.57	0.020988								0	0	0	0.264	1	30353	30353		1.8442	0.19162	1				15920	774	8968	8969	20167	20167					0.10422436476960684
IRSSYIRVL	9	Unmodified	_IRSSYIRVL_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF;CAMK1D-MCM5|1|fusion	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.837646484375	2	553.837665	1105.66078	0.13893	7.6945E-05	-0.38987	-0.00021593	-0.25094	-0.00013898	553.8373143720788	40.987	0.6415	40.987	40.74	41.382	0					48	23	3	0	0	0	0.0091837	1	8799	8799		80.676	38.836	1	579230			15921	1562	8969	8970	20168	20168					0.11217400013947554
IRSSYIRVL	9	Unmodified	_IRSSYIRVL_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF;CAMK1D-MCM5|1|fusion	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8375854492188	2	553.837665	1105.66078	0.44119	0.00024435	-0.55631	-0.00030811	-0.11512	-6.3759E-05	553.8371683078673	40.8	0.63433	40.892	40.611	41.246	0.09267					49	22	3	0	0	0	0.011693	1	8749	8749		76.825	42.423	1	497610			15922	1562	8969	8970	20169	20169					0.11217400013947554
IRSSYIRVL	9	Unmodified	_IRSSYIRVL_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF;CAMK1D-MCM5|1|fusion	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	553.837665	1105.66078	0.1714	9.4928E-05	-0.38505	-0.00021326	-0.21365	-0.00011833	553.837362876841	40.713	0.64799	40.812	40.563	41.211	0.099407	-0.084856	5.8392E-05	NaN	80.676	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	585380			15923	1562	8969	8970							0.11217400013947554
IRSVNLLGR	9	Unmodified	_IRSVNLLGR_					0	0	0			REV__nc|ENSG00000196364|A6NIE9|PRSS29P	REV__nc|ENSG00000196364|A6NIE9|PRSS29P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2642822265625	2	514.322183	1026.62981	-1.3861	-0.00071289	-0.022309	-1.1474E-05	-1.4084	-0.00072436	514.3219867955377	34.652	0.57453	34.727	34.549	35.123	0.075306					46	20	3	0	0	0	0.25779	1	6804	6804		6.2058	0	1	487580	+		15924	23147	8970	8971	20170	20170					0.11756246699701478
IRTIPQTTYK	10	Unmodified	_IRTIPQTTYK_					0	0	0		ENST00000487739.1_1_3:56595040-56595103:+|nuORF	ENST00000487739.1_1_3:56595040-56595103:+|nuORF	ENST00000487739.1_1_3:56595040-56595103:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.2263488769531	3	407.571434	1219.69247	-0.33185	-0.00013525	0.82051	0.00033442	0.48867	0.00019917	407.57176376452645	25.532	0.77664	25.5	25.047	25.824	-0.031408					48	27	2	0	0	0	0.3183	1	3989	3989		8.4443	2.2525	1	797570			15925	11123	8971	8972	20171	20171					0.09141347977219993
IRTNEAVPK	9	Unmodified	_IRTNEAVPK_					0	0	0		ENSG00000149972|ENST00000524871|CNTN5;nc|ENSG00000149972|O94779-2|CNTN5;nc|ENSG00000149972|O94779-4|CNTN5	ENSG00000149972|ENST00000524871|CNTN5	ENSG00000149972|ENST00000524871|CNTN5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2988891601562	2	514.298373	1026.58219	0.16277	8.3711E-05	-0.0058121	-2.9892E-06	0.15696	8.0722E-05	514.2981042619774	19.408	1.0036	19.292	18.977	19.981	-0.11592					81	34	4	0	0	0	0.32371	1	2303	2303		5.2969	2.0156	1	338320			15926	4901	8972	8973	20172	20172					0.06996547708831713
IRVCCTLWNAI	11	Unmodified	_IRVCCTLWNAI_					0	0	0			REV__ENST00000463543.5_1_1:151143496-151146942:-|nuORF	REV__ENST00000463543.5_1_1:151143496-151146942:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.3597412109375	2	646.336118	1290.65768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.84	1	103.85	103.35	104.35	0.0082703								0	0	0	0.36517	1	27591	27591		4.897	1.3005	1		+		15927	21253	8973	8974	20173	20173					0.02398065573288477
IRYFIRKMR	9	Unmodified	_IRYFIRKMR_					0	0	0			REV__ENSG00000111536|ENST00000229134|IL26	REV__ENSG00000111536|ENST00000229134|IL26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8825073242188	2	641.881884	1281.74922	0.33589	0.0002156	1.0458	0.00067127	1.3817	0.00088687	641.882430388857	96.394	0.58043	96.472	96.248	96.828	0.077415					94	58	2	0	0	0	0.35563	1	25791	25791		0.52476	0.12405	1	179320	+		15928	14724	8974	8975	20174	20174					0.11961117052760528
ISAAVHRQ	8	Unmodified	_ISAAVHRQ_					0	0	0			REV__ENST00000522362.6_1_8:26366474-26366684:-|nuORF	REV__ENST00000522362.6_1_8:26366474-26366684:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2637023925781	2	441.251226	880.487899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.754	1	19.638	19.138	20.138	-0.11592								0	0	0	0.29147	1	2332	2332		30.225	1.738	1		+		15929	21915	8975	8976	20175	20175					0.04287453677375197
ISAFAVDIP	9	Unmodified	_ISAFAVDIP_					0	0	0		ENST00000467850.1_1_2:206629136-206659779:+|nuORF;ENSG00000118257|ENST00000357785|NRP2	ENST00000467850.1_1_2:206629136-206659779:+|nuORF	ENST00000467850.1_1_2:206629136-206659779:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7652893066406	2	466.758018	931.501483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.748	1	53.748	53.248	54.248	0								0	0	0	0.20238	1	12716	12716		21.747	0	1				15930	2822	8976	8977	20176	20176					0.032992666659424685
ISAIELNKQ	9	Unmodified	_ISAIELNKQ_					0	0	0		L1PBa_dup1647|chr11:58706535-58707863:+|2.5297567789786584|0.2468509632104079|3.36|517.0|37|3|sense	L1PBa_dup1647|chr11:58706535-58707863:+|2.5297567789786584|0.2468509632104079|3.36|517.0|37|3|sense	L1PBa_dup1647|chr11:58706535-58707863:+|2.5297567789786584|0.2468509632104079|3.36|517.0|37|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2763366699219	2	508.292756	1014.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.911	1	47.911	47.411	48.411	0								0	0	0	0.20639	1	10919	10919		20.454	1.0917	1				15931	12497	8977	8978	20177	20177					0.06425725614712974
ISAIELNKQ	9	Unmodified	_ISAIELNKQ_					0	0	0		L1PBa_dup1647|chr11:58706535-58707863:+|2.5297567789786584|0.2468509632104079|3.36|517.0|37|3|sense	L1PBa_dup1647|chr11:58706535-58707863:+|2.5297567789786584|0.2468509632104079|3.36|517.0|37|3|sense	L1PBa_dup1647|chr11:58706535-58707863:+|2.5297567789786584|0.2468509632104079|3.36|517.0|37|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.27557373046875	2	508.292756	1014.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.877	1	47.925	47.425	48.425	0.047523								0	0	0	0.18374	1	10907	10907		26.884	4.1474	1				15932	12497	8977	8978	20178	20178					0.06425725614712974
ISAKPLEM	8	Oxidation (M)	_ISAKPLEM(Oxidation (M))_		ISAKPLEM(1)		ISAKPLEM(100)	0	0	1		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.743896484375	2	452.744053	903.473554	-0.19313	-8.7437E-05	0.072511	3.2829E-05	-0.12061	-5.4608E-05	452.74397231594855	28.09	1.0838	28.09	27.789	28.873	0					78	37	3	0	0	0	0.019016	2	4836	4836;4886		103.35	25.369	1	1770300			15933	1238	8978	8979	20179;20180	20179		146			0.01795620414213772
ISAKPLEM	8	Oxidation (M)	_ISAKPLEM(Oxidation (M))_		ISAKPLEM(1)		ISAKPLEM(130)	0	0	1		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.743896484375	2	452.744053	903.473554	-0.13022	-5.8957E-05	0.094871	4.2952E-05	-0.03535	-1.6005E-05	452.74398541789697	28.063	1.1293	28.059	27.308	28.438	-0.0042572					82	39	3	0	0	0	0.0054663	3	4828	4828;4871;4924		126.57	48.582	1	1878800			15934	1238	8978	8979	20181;20182;20183	20181		146			0.01795620414213772
ISAKPLEM	8	Oxidation (M)	_ISAKPLEM(Oxidation (M))_		ISAKPLEM(1)		ISAKPLEM(110)	0	0	1		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7439270019531	2	452.744053	903.473554	-0.20635	-9.3425E-05	0.14603	6.6114E-05	-0.060322	-2.731E-05	452.7439998054949	28.028	1.1546	28.029	27.739	28.894	0.0004673					84	40	3	0	0	0	0.011583	2	4819	4819;4861		114.65	36.665	1	1815700			15935	1238	8978	8979	20184;20185	20184		146			0.01795620414213772
ISAPHMHAY	9	Unmodified	_ISAPHMHAY_					0	0	0		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.25830078125	2	513.744919	1025.47529	0.18111	9.3045E-05	0.013911	7.1468E-06	0.19502	0.00010019	513.7450198250058	68.431	1.077	68.503	68.213	69.29	0.071938					111	39	5	0	0	0	0.21905	1	17446	17446		23.148	2.2772	1	1900400			15936	2935	8979	8980	20186	20186					-0.03643325777170503
ISAPHMHAY	9	Unmodified	_ISAPHMHAY_					0	0	0		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.744919	1025.47529	0.36341	0.0001867	-0.16898	-8.6811E-05	0.19443	9.9889E-05	513.7449092965229	68.443	0.64607	68.443	68.226	68.872	0	-0.035872	-0.00011398	NaN	23.148	57	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1413900			15937	2935	8979	8980							-0.03643325777170503
ISAPSRLAL	9	Unmodified	_ISAPSRLAL_					0	0	0			REV__nc|ENSG00000163938|Q9BVP2-2|GNL3	REV__nc|ENSG00000163938|Q9BVP2-2|GNL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.2846374511719	2	464.284734	926.554916	0.058396	2.7112E-05	0.15083	7.0027E-05	0.20922	9.714E-05	464.2846505392792	35.612	0.66438	35.698	35.476	36.14	0.08625					48	23	3	0	0	0	0.18803	1	7123	7123		25.399	0.72543	1	1499800	+		15938	17105	8980	8981	20187	20187					0.08870064168456793
ISAPTARIPG	10	Unmodified	_ISAPTARIPG_					0	0	0			REV__nc|ENSG00000144331|Q569K4-3|ZNF385B	REV__nc|ENSG00000144331|Q569K4-3|ZNF385B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.29705810546875	2	491.787641	981.56073	-0.66065	-0.0003249	0.19253	9.4686E-05	-0.46812	-0.00023021	491.78773351630167	35.012	0.65915	35.09	34.704	35.364	0.077381					55	23	3	0	0	0	0.31515	1	6857	6857		12.241	1.4167	1	310960	+		15939	16228	8981	8982	20188	20188					0.06921162680134785
ISAPVVFFVDY	11	Unmodified	_ISAPVVFFVDY_					0	0	0		ENSG00000172315|ENST00000372114|TP53RK	ENSG00000172315|ENST00000372114|TP53RK	ENSG00000172315|ENST00000372114|TP53RK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.2095642089844	3	419.556902	1255.64888	-0.21754	-9.1269E-05	1.96	0.00082233	1.7425	0.00073106	419.55791724368106	31.548	0.35805	31.548	31.309	31.667	0					21	12	2	0	0	0	0.33122	1	5888	5888		7.0371	3.45	1	147660			15940	6619	8982	8983	20189	20189					0.03127738480111475
ISAQQNRVV	9	Unmodified	_ISAQQNRVV_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTC|p.V305Cfs*6|1|0.38|ENSG00000141367|chr17:59655965-59655966|-/T|frameshift_variant;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7880859375	2	507.788173	1013.56179	0.24297	0.00012338	-0.38347	-0.00019472	-0.1405	-7.1343E-05	507.7879217177005	24.751	0.32314	24.695	24.486	24.809	-0.055931					20	10	2	0	0	0	0.28674	1	3858	3858		10.824	3.5347	1	98114			15941	4369;923	8983	8984	20190	20190					0.05555377049051913
ISAQQNRVV	9	Unmodified	_ISAQQNRVV_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTC|p.V305Cfs*6|1|0.38|ENSG00000141367|chr17:59655965-59655966|-/T|frameshift_variant;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.8006591796875	2	507.788173	1013.56179	0.059504	3.0215E-05	-0.063059	-3.2021E-05	-0.0035553	-1.8054E-06	507.788107510107	24.671	0.37711	24.64	24.456	24.833	-0.031408					21	12	2	0	0	0	0.13748	1	3835	3835		32.786	17.537	1	115070			15942	4369;923	8983	8984	20191	20191					0.05555377049051913
ISAQQNRVV	9	Unmodified	_ISAQQNRVV_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTC|p.V305Cfs*6|1|0.38|ENSG00000141367|chr17:59655965-59655966|-/T|frameshift_variant;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.788173	1013.56179	0.27975	0.00014205	-0.27813	-0.00014123	0.0016169	8.2103E-07	507.788097571791	24.597	0.3953	24.597	24.367	24.762	0	-0.047254	-4.9193E-05	NaN	32.786	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84476			15943	4369;923	8983	8984							0.05555377049051913
ISATLVVQK	9	Unmodified	_ISATLVVQK_					0	0	0			REV__nc|ENSG00000162843|B1ANS9-2|WDR64	REV__nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.8007507324219	2	479.800217	957.585882	0.24233	0.00011627	0.47674	0.00022874	0.71907	0.00034501	479.80047823332075	43.946	0.47886	44.03	43.815	44.294	0.083996					37	17	3	0	0	0	0.063853	1	9704	9704		47.749	9.5731	1	750110	+		15944	17014	8984	8985	20192	20192					0.10539217482710228
ISATLVVQK	9	Unmodified	_ISATLVVQK_					0	0	0			REV__nc|ENSG00000162843|B1ANS9-2|WDR64	REV__nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	479.800217	957.585882	0.14791	7.0968E-05	0.72921	0.00034988	0.87712	0.00042084	479.80064212025457	44.123	0.45155	44.123	43.878	44.33	0	0.027372	0.00017823	NaN	47.749	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	539370	+		15945	17014	8984	8985							0.10539217482710228
ISATLVVQK	9	Unmodified	_ISATLVVQK_					0	0	0			REV__nc|ENSG00000162843|B1ANS9-2|WDR64	REV__nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.800217	957.585882	0.28698	0.00013769	0.51364	0.00024644	0.80062	0.00038414	479.8005806661297	44.056	0.51801	44.134	43.816	44.334	0.077515	0.038088	-2.8631E-05	NaN	47.749	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	745740	+		15946	17014	8984	8985							0.10539217482710228
ISATLVVQK	9	Unmodified	_ISATLVVQK_					0	0	0			REV__nc|ENSG00000162843|B1ANS9-2|WDR64	REV__nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.800217	957.585882	0.24233	0.00011627	0.47674	0.00022874	0.71907	0.00034501	479.80047823332075	43.946	0.47886	44.03	43.815	44.294	0.083996	-0.06546	-6.4044E-05	NaN	47.749	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	750110	+		15947	17014	8984	8985							0.10539217482710228
ISCPDMDDFK	10	Unmodified	_ISCPDMDDFK_					0	0	0		ENSG00000189108|ENST00000372582|IL1RAPL2	ENSG00000189108|ENST00000372582|IL1RAPL2	ENSG00000189108|ENST00000372582|IL1RAPL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3351440429688	2	585.743924	1169.4733	0.2071	0.00012131	-2.6628	-0.0015597	-2.4557	-0.0014384	585.7424573782025	55.502	0.30849	55.502	55.35	55.658	0					16	10	2	0	0	0	0.31629	1	13227	13227		10.074	3.3508	1	187570			15948	7802	8985	8986	20193	20193					-0.10466167367962953
ISCPPKSRL	9	Unmodified	_ISCPPKSRL_					0	0	0			REV__ENST00000356956.5_2_6:160527199-160527481:+|nuORF	REV__ENST00000356956.5_2_6:160527199-160527481:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8293762207031	2	500.784044	999.553536	0.26491	0.00013267	-0.93727	-0.00046937	-0.67235	-0.0003367	500.7843382316059	38.322	0.51189	38.322	38.007	38.518	0					25	16	2	0	0	0	0.18123	1	7964	7964		21.537	7.6309	1	328580	+		15949	20205	8986	8987	20194	20194					0.05374106808073975
ISCYLRCL	8	Unmodified	_ISCYLRCL_					0	0	0		nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61435991-61439052:-|nuORF	nc|ENSG00000115464|Q70CQ2-2|USP34	nc|ENSG00000115464|Q70CQ2-2|USP34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8003845214844	2	485.746073	969.477594	0.35865	0.00017421	2.2028	0.00107	2.5614	0.0012442	485.7472984489591	65.674	0.42663	65.763	65.547	65.973	0.088875					21	15	2	0	0	0	0.29634	1	16380	16380		26.884	3.7352	1	131860			15950	2650	8987	8988	20195	20195					-0.008366133637309758
ISDKITISKNF	11	Unmodified	_ISDKITISKNF_					0	0	0		ENST00000538021.5_2_11:72004413-72018253:-|nuORF;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB	ENST00000538021.5_2_11:72004413-72018253:-|nuORF	ENST00000538021.5_2_11:72004413-72018253:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5746765136719	3	422.574844	1264.7027	-0.23835	-0.00010072	0.54237	0.00022919	0.30401	0.00012847	422.5751216892471	18.906	1.9427	18.848	17.678	19.621	-0.058174					208	68	4	0	0	0	0.41896	1	2240	2240		4.4062	0	1	904960			15951	5550	8988	8989	20196	20196					0.08093910911816238
ISDLKKLIF	9	Unmodified	_ISDLKKLIF_					0	0	0			REV__ENST00000354833.7_1_5:70213930-70214023:+|nuORF	REV__ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.294921875	2	538.839342	1075.66413	0.53058	0.0002859	-0.025067	-1.3507E-05	0.50551	0.00027239	538.8391774213538	62.269	0.44142	62.269	62.084	62.526	0					29	16	2	0	0	0	0.24993	1	15422	15422		13.042	5.7532	1	333940	+		15952	17907	8989	8990	20197	20197					0.12932650067932627
ISDLKKLIF	9	Unmodified	_ISDLKKLIF_					0	0	0			REV__ENST00000354833.7_1_5:70213930-70214023:+|nuORF	REV__ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2950439453125	2	538.839342	1075.66413	0.4091	0.00022044	0.059007	3.1795E-05	0.46811	0.00025224	538.8393348739628	62.243	0.42223	62.34	62.149	62.572	0.096985					28	15	2	0	0	0	0.24993	1	15379	15379		13.042	5.7532	1	322750	+		15953	17907	8989	8990	20198	20198					0.12932650067932627
ISDPDLTLK	9	Unmodified	_ISDPDLTLK_					0	0	0		ENSG00000086967|ENST00000357701|MYBPC2	REV__TMEM192|p.D25Vfs*27|1|0.05|ENSG00000170088|chr4:165103050-165103051|-/GA|frameshift_variant	REV__TMEM192|p.D25Vfs*27|1|0.05|ENSG00000170088|chr4:165103050-165103051|-/GA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.80511474609375	2	501.279315	1000.54408	0.19638	9.844E-05	1.2622	0.00063272	1.4586	0.00073116	501.27974167136625	38.326	0.27922	38.326	38.239	38.518	0					12	9	2	0	0	0	0.1939	1	8035	8035		13.042	6.3193	1	249280			15954	1289	8990	8991	20199	20199					0.04382617003523137
ISDPDLTLK	9	Unmodified	_ISDPDLTLK_					0	0	0		ENSG00000086967|ENST00000357701|MYBPC2	REV__TMEM192|p.D25Vfs*27|1|0.05|ENSG00000170088|chr4:165103050-165103051|-/GA|frameshift_variant	REV__TMEM192|p.D25Vfs*27|1|0.05|ENSG00000170088|chr4:165103050-165103051|-/GA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8052062988281	2	501.279315	1000.54408	0.32939	0.00016512	1.6565	0.00083035	1.9859	0.00099547	501.28007855537385	38.22	0.39198	38.318	38.176	38.568	0.097527					20	13	2	0	0	0	0.21389	1	7990	7990		19.257	8.4331	1	228540			15955	1289	8990	8991	20200	20200					0.04382617003523137
ISDPTSPLRTR	11	Unmodified	_ISDPTSPLRTR_					0	0	0		ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	ENSG00000132465|ENST00000254801|JCHAIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.24664306640625	3	414.89821	1241.6728	0.1337	5.5472E-05	-0.95886	-0.00039783	-0.82516	-0.00034236	414.8977028811072	32.089	0.56873	32.089	31.9	32.469	0					32	20	2	0	0	0	0.30814	1	6052	6052		19.144	1.572	1	242200			15956	3636	8991	8992	20201	20201					0.06162971966477926
ISDVKTQI	8	Unmodified	_ISDVKTQI_					0	0	0			REV__nc|ENSG00000122223|Q9BZW8-4|CD244	REV__nc|ENSG00000122223|Q9BZW8-4|CD244	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2486267089844	2	452.260925	902.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.302	1	76.271	75.771	76.771	-0.031487								0	0	0	0.36336	1	19631	19631		8.5933	0.68312	1		+		15957	15152	8992	8993	20202	20202					0.05214365177630498
ISDYDQIDR	9	Unmodified	_ISDYDQIDR_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.7647705078125	2	562.76456	1123.51457	0.071067	3.9994E-05	0.071427	4.0197E-05	0.14249	8.019E-05	562.7645895497214	22.602	0.63521	22.557	22.238	22.873	-0.044867					51	21	3	0	0	0	0.25527	1	3209	3209		8.7454	0.58988	1	196900	+		15958	18736	8993	8994	20203	20203					-0.04224947012630764
ISDYFERRVEQ	11	Unmodified	_ISDYFERRVEQ_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7513122558594	3	481.240524	1440.69974	0.47289	0.00022757	2.041	0.0009822	2.5139	0.0012098	481.2414359942978	53.122	0.38845	53.178	53.043	53.431	0.056255					17	13	2	0	0	0	0.32824	1	12492	12492		12.856	6.2325	1	376770			15959	12746	8994	8995	20204	20204					-0.002979642129957938
ISELDRRCHS	10	Unmodified	_ISELDRRCHS_					0	0	0		ENSG00000132109|ENST00000254436|TRIM21	ENSG00000132109|ENST00000254436|TRIM21	ENSG00000132109|ENST00000254436|TRIM21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.299072265625	2	608.298578	1214.5826	0.43655	0.00026555	0.15706	9.5538E-05	0.59361	0.00036109	608.2987886460102	51.197	1.0789	51.207	50.913	51.992	0.0095634					95	40	5	0	0	0	0.013578	1	11893	11893		78.728	34.956	1	5358700			15960	3609	8995	8996	20205	20205					-0.016104006336036036
ISEREIKYFT	10	Unmodified	_ISEREIKYFT_					0	0	0		L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|135|3|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|135|3|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|135|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.61138916015625	3	429.231077	1284.6714	0.093303	4.0049E-05	-1.6702	-0.00071689	-1.5769	-0.00067684	429.5651000862904	44.952	0.21423	44.952	44.881	45.095	0					11	7	2	0	0	0	0.32082	1	10022	10022		3.3196	0	1	78970			15961	12480	8996	8997	20206	20206					0.04045337877687416
ISERREVMKQ	10	Unmodified	_ISERREVMKQ_					0	0	0			REV__ENSG00000109061|ENST00000226207|MYH1	REV__ENSG00000109061|ENST00000226207|MYH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.88720703125	3	425.899445	1274.6765	-0.050359	-2.1448E-05	0.66717	0.00028415	0.61681	0.0002627	426.23423380481034	43.991	0.63585	44.075	43.736	44.371	0.083992					29	23	2	0	0	0	0.31994	1	9788	9788		5.4027	1.2132	1	375510	+		15962	14623	8997	8998	20207	20207					0.05015318468667829
ISERVCREIDI	11	Unmodified	_ISERVCREIDI_					0	0	0			REV__nc|ENSG00000145348|Q8TEA7-2|TBCK	REV__nc|ENSG00000145348|Q8TEA7-2|TBCK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	444.25091552734375	3	444.902855	1331.68673	0.24657	0.0001097	-3.1902	-0.0014193	-2.9436	-0.0013096	445.23586937370914	31.323	0.3817	31.364	31.098	31.479	0.040989					24	13	3	0	0	0	0.32563	1	5806	5806		17.049	3.5299	1	59789	+		15963	16289	8998	8999	20208	20208					0.03415881403248022
ISERVCREIDI	11	Unmodified	_ISERVCREIDI_					0	0	0			REV__nc|ENSG00000145348|Q8TEA7-2|TBCK	REV__nc|ENSG00000145348|Q8TEA7-2|TBCK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	444.902855	1331.68673	-0.13653	-6.0744E-05	-4.5197	-0.0020108	-4.6562	-0.0020716	444.9005546290019	31.25	0.085297	31.292	31.237	31.322	0.042366	-0.035765	-0.00064423	NaN	17.049	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57268	+		15964	16289	8998	8999							0.03415881403248022
ISERVNSVFNY	11	Unmodified	_ISERVNSVFNY_					0	0	0			REV__nc|ENSG00000173421|Q8IYA8-2|IHO1	REV__nc|ENSG00000173421|Q8IYA8-2|IHO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.6019592285156	3	443.226215	1326.65681	0.036764	1.6295E-05	-0.021761	-9.645E-06	0.015003	6.6496E-06	443.2260925925131	22.339	0.68521	22.289	21.926	22.612	-0.049377					43	23	3	0	0	0	0.3322	1	3083	3083		2.6312	1.1761	1	81931	+		15965	17782	8999	9000	20209	20209					0.006552657295969766
ISERVNSVFNY	11	Unmodified	_ISERVNSVFNY_					0	0	0			REV__nc|ENSG00000173421|Q8IYA8-2|IHO1	REV__nc|ENSG00000173421|Q8IYA8-2|IHO1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	443.226215	1326.65681	0.097473	4.3203E-05	-0.2358	-0.00010451	-0.13833	-6.131E-05	443.2260835629298	22.309	0.51657	22.309	22.017	22.533	0	0.008675	-0.0002081	NaN	2.6312	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102950	+		15966	17782	8999	9000							0.006552657295969766
ISERVNSVFNY	11	Unmodified	_ISERVNSVFNY_					0	0	0			REV__nc|ENSG00000173421|Q8IYA8-2|IHO1	REV__nc|ENSG00000173421|Q8IYA8-2|IHO1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	443.226215	1326.65681	0.044545	1.9743E-05	0.096714	4.2866E-05	0.14126	6.2609E-05	443.2263804945135	22.4	0.57102	22.302	22.047	22.618	-0.098181	0.0017845	0.00023404	NaN	2.6312	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108960	+		15967	17782	8999	9000							0.006552657295969766
ISESFFPPK	9	Unmodified	_ISESFFPPK_					0	0	0			REV__ENSG00000168038|ENST00000301831|ULK4	REV__ENSG00000168038|ENST00000301831|ULK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2772827148438	2	526.276575	1050.5386	0.47624	0.00025063	0.53831	0.0002833	1.0145	0.00053393	526.2765378544667	58.997	0.72603	59.088	58.708	59.434	0.091301					55	25	3	0	0	0	0.11461	1	14313	14313		36.127	3.8215	1	530600	+		15968	17434	9000	9001	20210	20210					0.015349382117165078
ISESQRTFFTS	11	Unmodified	_ISESQRTFFTS_					0	0	0		ENST00000575606.5_1_18:3594122-3597210:+|nuORF	ENST00000575606.5_1_18:3594122-3597210:+|nuORF	ENST00000575606.5_1_18:3594122-3597210:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.8822937011719	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.73	1	111.71	111.21	112.21	-0.015625								0	0	0	0.38124	1	29064	29064		1.2148	0.51716	1				15969	12048	9001	9002	20211	20211					-0.013567270243811436
ISETTVTIN	9	Unmodified	_ISETTVTIN_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4;FAT4|p.I3381Kfs*8|1|0.06|ENSG00000196159|chr4:125451157-125451158|-/AACACTTCTCCAACAATAG|frameshift_variant	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2741394042969	2	489.261122	976.507691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.364	1	31.364	30.864	31.864	0								0	0	0	0.23367	1	5852	5852		11.64	3.047	1				15970	7830	9002	9003	20212	20212					0.018497401068202635
ISFGAFVAK	9	Unmodified	_ISFGAFVAK_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2690124511719	2	470.268553	938.522553	0.033312	1.5666E-05	0.3734	0.0001756	0.40671	0.00019126	470.26866796431307	55.354	0.84649	55.354	55.008	55.854	0					67	30	3	0	0	0	0.003317	1	13173	13173		99.755	41.076	1	1476000			15971	4510	9003	9004	20213	20213					0.05083276765469691
ISFGAFVAK	9	Unmodified	_ISFGAFVAK_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.26861572265625	2	470.268553	938.522553	0.356	0.00016742	0.23517	0.00011059	0.59118	0.00027801	470.2685797485518	55.263	0.8004	55.334	55.028	55.828	0.070885					66	29	3	0	0	0	0.0042138	1	13156	13156		92.653	33.975	1	1651500			15972	4510	9003	9004	20214	20214					0.05083276765469691
ISFGAFVAK	9	Unmodified	_ISFGAFVAK_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2687683105469	2	470.268553	938.522553	0.23086	0.00010857	0.16205	7.6206E-05	0.39291	0.00018477	470.26858761269676	55.43	0.83669	55.411	55.129	55.965	-0.019077					63	30	3	0	0	0	0.0042138	1	13202	13202		92.653	33.975	1	1916900			15973	4510	9003	9004	20215	20215					0.05083276765469691
ISFIMQYQLQF	11	Unmodified	_ISFIMQYQLQF_					0	0	0			REV__ENST00000523426.1_1_8:54669186-54714423:-|nuORF	REV__ENST00000523426.1_1_8:54669186-54714423:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.79248046875	3	473.244329	1416.71116	-0.11699	-5.5365E-05	-0.31095	-0.00014716	-0.42794	-0.00020252	473.2441825101281	34.314	0.69914	34.381	33.995	34.694	0.066704					63	24	4	0	0	0	0.33287	1	6671	6671		2.8433	0.4085	1	344520	+		15974	13540	9004	9005	20216	20216					0.019471415567750228
ISFIMQYQLQF	11	Unmodified	_ISFIMQYQLQF_					0	0	0			REV__ENST00000523426.1_1_8:54669186-54714423:-|nuORF	REV__ENST00000523426.1_1_8:54669186-54714423:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	473.244329	1416.71116	-0.74379	-0.00035199	0.60951	0.00028845	-0.13428	-6.3547E-05	473.24457772630757	34.511	0.46889	34.511	34.306	34.775	0	0.061755	0.00028425	NaN	2.8433	42	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484950	+		15975	13540	9004	9005							0.019471415567750228
ISFIMQYQLQF	11	Unmodified	_ISFIMQYQLQF_					0	0	0			REV__ENST00000523426.1_1_8:54669186-54714423:-|nuORF	REV__ENST00000523426.1_1_8:54669186-54714423:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	473.244329	1416.71116	-0.67819	-0.00032095	0.48033	0.00022731	-0.19786	-9.3637E-05	473.24457574573205	34.387	0.50014	34.455	34.205	34.705	0.068039	0.006248	0.00010086	NaN	2.8433	45	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428780	+		15976	13540	9004	9005							0.019471415567750228
ISFITDDPMPL	11	Unmodified	_ISFITDDPMPL_					0	0	0		ENSG00000166912|ENST00000435680|MTMR10;nc|ENSG00000166912|Q9NXD2-3|MTMR10	ENSG00000166912|ENST00000435680|MTMR10	ENSG00000166912|ENST00000435680|MTMR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.8129272460938	2	624.812664	1247.61078	0.5933	0.0003707	0.23947	0.00014963	0.83277	0.00052033	624.8129360891062	74.967	0.96263	74.967	74.432	75.395	0					54	25	3	0	0	0	0.41896	1	19270	19270		8.7454	8.7454	1	579400			15977	6130	9005	9006	20217	20217					-0.0031251549687567604
ISFITDDPMPL	11	Unmodified	_ISFITDDPMPL_					0	0	0		ENSG00000166912|ENST00000435680|MTMR10;nc|ENSG00000166912|Q9NXD2-3|MTMR10	ENSG00000166912|ENST00000435680|MTMR10	ENSG00000166912|ENST00000435680|MTMR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.8126831054688	2	624.812664	1247.61078	0.064166	4.0092E-05	0.77905	0.00048676	0.84322	0.00052685	624.8131584519547	74.861	1.448	74.914	74.519	75.967	0.052361					59	27	3	0	0	0	0.44192	1	19255	19255		5.7319	5.7319	1	742120			15978	6130	9005	9006	20218	20218					-0.0031251549687567604
ISFLQEKLQE	10	Unmodified	_ISFLQEKLQE_					0	0	0		nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A;ENSG00000032219|ENST00000355431|ARID4A	nc|ENSG00000032219|P29374-3|ARID4A	nc|ENSG00000032219|P29374-3|ARID4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.5486145019531	3	412.227444	1233.6605	0.19633	8.0932E-05	0.33973	0.00014005	0.53606	0.00022098	412.2273777894813	16.805	0.92177	16.743	16.205	17.127	-0.062534					74	32	4	0	0	0	0.34155	1	1505	1505		14.218	3.9029	1	261790			15979	554	9006	9007	20219	20219					0.05301935503439381
ISFPKDTV	8	Unmodified	_ISFPKDTV_					0	0	0			REV__nc|ENSG00000257743|Q2M2H8-3|MGAM2	REV__nc|ENSG00000257743|Q2M2H8-3|MGAM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.7503356933594	2	453.750193	905.485833	0.32826	0.00014895	-0.15224	-6.9077E-05	0.17603	7.9872E-05	453.75001019637403	59.497	0.48416	59.486	59.199	59.683	-0.011486					26	16	2	0	0	0	0.42371	1	14471	14471		14.838	1.3304	1	256380	+		15980	19265	9007	9008	20220	20220					0.02930980148892104
ISFPRPFF	8	Unmodified	_ISFPRPFF_					0	0	0			REV__ENST00000395111.7_1_19:3452656-3462859:+|nuORF	REV__ENST00000395111.7_1_19:3452656-3462859:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.76519775390625	2	505.776545	1009.53854	0.36911	0.00018669	2.5125	0.0012708	2.8816	0.0014575	505.7779514173933	68.233	0.27016	68.213	68.014	68.284	-0.019157					14	9	2	0	0	0	0.34092	1	17161	17161		4.756	0	1	188080	+		15981	20626	9008	9009	20221	20221					0.03414983002369354
ISFWRRNWTK	10	Unmodified	_ISFWRRNWTK_					0	0	0			REV__ENSG00000114331|ENST00000326793|ACAP2;REV__ENSG00000131584|ENST00000354700|ACAP3	REV__ENSG00000114331|ENST00000326793|ACAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.78607177734375	3	465.254439	1392.74149	-0.45552	-0.00021193	-0.41852	-0.00019472	-0.87404	-0.00040665	465.25420012981357	34.329	0.55581	34.395	34.04	34.595	0.06636					48	19	3	0	0	0	0.31969	1	6762	6762		5.7834	2.1908	1	267850	+		15982	14830;15524	9009	9010	20222	20222					0.060826810568187284
ISFWRRNWTK	10	Unmodified	_ISFWRRNWTK_					0	0	0			REV__ENSG00000114331|ENST00000326793|ACAP2;REV__ENSG00000131584|ENST00000354700|ACAP3	REV__ENSG00000114331|ENST00000326793|ACAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.76373291015625	3	465.254439	1392.74149	-0.043047	-2.0028E-05	-0.80227	-0.00037326	-0.84532	-0.00039329	465.2541072292429	34.238	0.58368	34.305	33.967	34.55	0.066704					44	20	3	0	0	0	0.32051	1	6755	6755		3.8763	0	1	258100	+		15983	14830;15524	9009	9010	20223	20223					0.060826810568187284
ISFYTSSSF	9	Unmodified	_ISFYTSSSF_					0	0	0		nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1;nc|ENSG00000187908|Q9UGM3-9|DMBT1;nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1	nc|ENSG00000187908|Q9UGM3-5|DMBT1	nc|ENSG00000187908|Q9UGM3-5|DMBT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3005981445312	2	519.742565	1037.47058	0.51392	0.00026711	1.2121	0.00062998	1.726	0.00089709	519.7435001611334	64.337	1.0363	64.43	63.737	64.773	0.09288					69	37	3	0	0	0	0.074331	1	15936	15936		61.357	15.337	1	549170			15984	7718	9010	9011	20224	20224					-0.046659314389671636
ISGAKAHNL	9	Unmodified	_ISGAKAHNL_					0	0	0			REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2870788574219	2	455.758884	909.503215	0.22646	0.00010321	-0.38535	-0.00017563	-0.15889	-7.2415E-05	455.7586607306068	38.033	0.41721	38.124	37.877	38.294	0.090885					22	14	2	0	0	0	0.23784	1	7935	7935		5.7319	1.7875	1	119060	+		15985	13184	9011	9012	20225	20225					0.04484320474546166
ISGAKAHNL	9	Unmodified	_ISGAKAHNL_					0	0	0			REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	455.758884	909.503215	0.13708	6.2476E-05	0.42025	0.00019153	0.55733	0.00025401	455.75907286581025	38.093	0.42443	38.093	37.895	38.32	0	0.0255	0.00048055	NaN	2.9952	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131820	+		15986	13184	9011	9012							0.04484320474546166
ISGAKAHNL	9	Unmodified	_ISGAKAHNL_					0	0	0			REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	455.758884	909.503215	0.10332	4.7088E-05	0.18617	8.4849E-05	0.28949	0.00013194	455.7589958022396	37.888	0.40654	37.986	37.796	38.202	0.097527	-0.081981	0.00026719	NaN	2.9952	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135070	+		15987	13184	9011	9012							0.04484320474546166
ISGAPLSPVL	10	Unmodified	_ISGAPLSPVL_					0	0	0			REV__ENST00000546516.5_1_16:712885-713302:+|nuORF	REV__ENST00000546516.5_1_16:712885-713302:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.8404235839844	2	477.286943	952.559333	0.26684	0.00012736	-0.39968	-0.00019076	-0.13283	-6.3399E-05	477.28667643714385	46.783	0.68227	46.783	46.43	47.112	0					39	23	2	0	0	0	0.26638	1	10618	10618		24.021	4.7636	1	536950	+		15988	22168	9012	9013	20226	20226					0.08115528591372367
ISGEALTPK	9	Unmodified	_ISGEALTPK_					0	0	0		ENST00000266542.8_1_12:7260992-7261829:-|nuORF	ENST00000266542.8_1_12:7260992-7261829:-|nuORF	ENST00000266542.8_1_12:7260992-7261829:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.1944580078125	2	458.260925	914.507297	-0.28133	-0.00012892	-3.9405	-0.0018058	-4.2219	-0.0019347	458.26037258910657	28.231	0.4354	28.231	27.954	28.389	0					22	14	2	0	0	0	0.2422	1	4860	4860		14.405	0.49933	1	100520			15989	9059	9013	9014	20227	20227					0.04662365177603078
ISGEALTPK	9	Unmodified	_ISGEALTPK_					0	0	0		ENST00000266542.8_1_12:7260992-7261829:-|nuORF	ENST00000266542.8_1_12:7260992-7261829:-|nuORF	ENST00000266542.8_1_12:7260992-7261829:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.1945495605469	2	458.260925	914.507297	-0.16541	-7.5801E-05	-3.7943	-0.0017388	-3.9597	-0.0018146	458.25999010753293	28.156	0.45091	28.152	27.882	28.333	-0.0042572					25	15	2	0	0	0	0.23749	1	4863	4863		15.248	0.41021	1	133350			15990	9059	9013	9014	20228	20228					0.04662365177603078
ISGFFSGWF	9	Unmodified	_ISGFFSGWF_					0	0	0			REV__nc|ENSG00000172954|Q6UWP7-2|LCLAT1	REV__nc|ENSG00000172954|Q6UWP7-2|LCLAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.811279296875	2	524.25036	1046.48617	0.84117	0.00044099	1.3945	0.00073107	2.2357	0.0011721	524.7527362322596	48.355	0.25888	48.402	48.314	48.573	0.04752					13	9	2	0	0	0	0.24913	1	11035	11035		4.3292	0	1	178120	+		15991	17751	9014	9015	20229	20229					-0.03521600131239211
ISGQKIGLNK	10	Unmodified	_ISGQKIGLNK_					0	0	0		HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|131|3|sense;HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|128|3|sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|131|3|sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|131|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3111572265625	2	529.321848	1056.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.469	1	29.469	28.969	29.969	0								0	0	0	0.34994	1	5275	5275		14.838	0.93222	1				15992	12407	9015	9016	20230	20230					0.10309407260001535
ISGQVHGFYSL	11	Unmodified	_ISGQVHGFYSL_					0	0	0		ENSG00000033327|ENST00000361507|GAB2;nc|ENSG00000033327|Q9UQC2-2|GAB2	ENSG00000033327|ENST00000361507|GAB2	ENSG00000033327|ENST00000361507|GAB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.308837890625	2	604.308938	1206.60332	0.15862	9.5856E-05	0.055065	3.3277E-05	0.21369	0.00012913	604.3088982783711	14.05	0.26237	13.945	13.816	14.079	-0.10466					16	8	3	0	0	0	0.47545	1	624	624		0.30703	0.30703	1	80242			15993	561	9016	9017	20231	20231					0.008285130177227984
ISGQVNKEF	9	Unmodified	_ISGQVNKEF_					0	0	0			REV__ENSG00000164023|ENST00000690982|SGMS2	REV__ENSG00000164023|ENST00000690982|SGMS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8009033203125	2	511.269281	1020.52401	0.32084	0.00016403	0.78102	0.00039931	1.1019	0.00056335	511.2689830067349	38.477	0.71907	38.568	38.011	38.73	0.090881					46	25	4	0	0	0	0.2451	1	7998	7998		3.5965	0	1	249780	+		15994	17114	9017	9018	20232	20232					0.0145686606357458
ISHALKQKFAF	11	Unmodified	_ISHALKQKFAF_					0	0	0		ENSG00000146410|ENST00000420702|MTFR2	ENSG00000146410|ENST00000420702|MTFR2	ENSG00000146410|ENST00000420702|MTFR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8882751464844	3	430.583674	1288.72919	-0.43327	-0.00018656	-2.873	-0.0012371	-3.3063	-0.0014236	430.5825258284418	34.394	0.2524	34.394	34.22	34.472	0					10	8	2	0	0	0	0.32736	1	6726	6726		4.1166	0	1	65033			15995	4710	9018	9019	20233	20233					0.09637644593794903
ISHEVHAD	8	Unmodified	_ISHEVHAD_					0	0	0			REV__TREM2|p.A180Pfs*9|1|0.3|ENSG00000095970|chr6:41159011-41159011|C/-|frameshift_variant	REV__TREM2|p.A180Pfs*9|1|0.3|ENSG00000095970|chr6:41159011-41159011|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.25872802734375	2	454.217049	906.419545	-0.039983	-1.8161E-05	-0.35422	-0.00016089	-0.39421	-0.00017906	454.2166124639358	17.994	0.54682	17.934	17.736	18.283	-0.060429					32	19	2	0	0	0	0.34092	1	1780	1780		13.508	0.97634	1	69742	+		15996	14109	9019	9020	20234	20234					-0.03740835693156441
ISHIAEDYYVR	11	Unmodified	_ISHIAEDYYVR_					0	0	0			REV__ENSG00000145087|ENST00000471454|STXBP5L	REV__ENSG00000145087|ENST00000471454|STXBP5L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.884521484375	3	455.898098	1364.67246	0.15313	6.9813E-05	-0.33886	-0.00015449	-0.18573	-8.4673E-05	455.8978899957334	20.333	0.47053	20.333	20.18	20.65	0					35	16	3	0	0	0	0.33263	1	2520	2520		3.8459	3.8459	1	116660	+		15997	16276	9020	9021	20235	20235					0.004715522465858157
ISHLILRKA	9	Unmodified	_ISHLILRKA_					0	0	0		nc|ENSG00000105737|Q16478-2|GRIK5;ENSG00000105737|ENST00000593562|GRIK5	nc|ENSG00000105737|Q16478-2|GRIK5	nc|ENSG00000105737|Q16478-2|GRIK5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8004760742188	2	525.842751	1049.67095	0.41352	0.00021745	-2.9074	-0.0015288	-2.4939	-0.0013114	525.8421858077106	49.537	0.46251	49.569	49.295	49.758	0.032043					27	16	2	0	0	0	0.25622	1	11467	11467		7.2892	2.0586	1	233190			15998	2019	9021	9022	20236	20236					0.14810007739197317
ISHLILRKA	9	Unmodified	_ISHLILRKA_					0	0	0		nc|ENSG00000105737|Q16478-2|GRIK5;ENSG00000105737|ENST00000593562|GRIK5	nc|ENSG00000105737|Q16478-2|GRIK5	nc|ENSG00000105737|Q16478-2|GRIK5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	525.842751	1049.67095	0.42944	0.00022582	-2.7084	-0.0014242	-2.279	-0.0011984	525.8420858127608	49.531	0.40697	49.575	49.342	49.749	0.044888	0.027034	0.00043948	NaN	7.2892	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270630			15999	2019	9021	9022							0.14810007739197317
ISHLLAASV	9	Unmodified	_ISHLLAASV_					0	0	0		chr7:27632445-27647152|148|20.18|0.42|5.6|-|2|TE_info:MER44B,MER44B_dup957,TcMar-Tigger,DNA,donor,-,27647152,27647430|HIBADH,None|3	chr7:27632445-27647152|148|20.18|0.42|5.6|-|2|TE_info:MER44B,MER44B_dup957,TcMar-Tigger,DNA,donor,-,27647152,27647430|HIBADH,None|3	chr7:27632445-27647152|148|20.18|0.42|5.6|-|2|TE_info:MER44B,MER44B_dup957,TcMar-Tigger,DNA,donor,-,27647152,27647430|HIBADH,None|3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.7588806152344	2	455.77146	909.528367	-0.15496	-7.0625E-05	-0.39528	-0.00018016	-0.55024	-0.00025078	455.7710920992589	24.822	0.83878	24.791	24.456	25.294	-0.031408					39	28	2	0	0	0	0.28674	1	3849	3849		10.824	0	1	96373			16000	177	9022	9023	20237	20237					0.06998375277134983
ISHSIGSFF	9	Unmodified	_ISHSIGSFF_					0	0	0			REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	REV__nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.765869140625	2	497.753267	993.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.903	1	30.931	30.431	31.431	0.027946								0	0	0	0.22065	1	5712	5712		15.847	0	1		+		16001	16681	9023	9024	20238	20238					-0.005025016195645549
ISHTEEKLYK	10	Unmodified	_ISHTEEKLYK_					0	0	0		ENSG00000213988|ENST00000418063|ZNF90	ENSG00000213988|ENST00000418063|ZNF90	ENSG00000213988|ENST00000418063|ZNF90	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.9028625488281	3	416.559194	1246.65575	-0.039573	-1.6484E-05	-1.1988	-0.00049938	-1.2384	-0.00051586	416.55852687922476	18.092	0.57311	18.034	17.768	18.341	-0.058174					40	20	3	0	0	0	0.37568	1	1830	1830		7.9454	0.33645	1	195670			16002	8371	9024	9025	20239	20239					0.042290513606758395
ISHTYYYNDS	10	Unmodified	_ISHTYYYNDS_					0	0	0			REV__ENSG00000129925|ENST00000431232|PGAP6	REV__ENSG00000129925|ENST00000431232|PGAP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.5144348144531	3	421.515654	1261.52513	-0.11269	-4.7502E-05	-1.6526	-0.0006966	-1.7653	-0.0007441	421.51493282692763	26.332	0.83983	26.294	26.069	26.909	-0.03867					41	29	2	0	0	0	0.3994	1	4334	4334		3.5871	0.74377	1	291710	+		16003	15432	9025	9026	20240	20240					-0.09516964358181212
ISHVFGVVWS	10	Unmodified	_ISHVFGVVWS_					0	0	0			REV__ENSG00000169484|ENST00000641793|OR4K14	REV__ENSG00000169484|ENST00000641793|OR4K14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.7614135742188	2	565.803291	1129.59203	0.021362	1.2087E-05	-1.5376	-0.00086995	-1.5162	-0.00085787	565.8031709924215	65.177	1.1792	65.266	64.876	66.055	0.088882					120	43	5	0	0	0	0.31358	1	16132	16132		9.3831	0	1	890520	+		16004	17517	9026	9027	20241	20241					0.032417357142321634
ISHVLKQLILF	11	Unmodified	_ISHVLKQLILF_					0	0	0		ENST00000468435.6_1_9:6506198-6506309:+|nuORF	ENST00000468435.6_1_9:6506198-6506309:+|nuORF	ENST00000468435.6_1_9:6506198-6506309:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2232360839844	3	437.611341	1309.81219	-0.14902	-6.5211E-05	-0.94868	-0.00041515	-1.0977	-0.00048037	437.6109385218005	18.104	0.72155	17.987	17.603	18.325	-0.11739					29	24	2	0	0	0	0.33346	1	1880	1880		0.50596	0.34663	1	40226			16005	10839	9027	9028	20242	20242					0.16967961321779512
ISHWYMTWL	9	Unmodified	_ISHWYMTWL_					0	0	0		Tigger1_dup3125|chr4:68946744-68948416:-|1.16044740011086|0.0637849449006259|4.19|511.0|47|3|sense	Tigger1_dup3125|chr4:68946744-68948416:-|1.16044740011086|0.0637849449006259|4.19|511.0|47|3|sense	Tigger1_dup3125|chr4:68946744-68948416:-|1.16044740011086|0.0637849449006259|4.19|511.0|47|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.1806945800781	3	412.867193	1235.57975	-0.20114	-8.3043E-05	1.7758	0.00073318	1.5747	0.00065013	412.8679131660092	27.91	0.66769	27.91	27.626	28.294	0.0004673					27	23	2	0	0	0	0.259	1	4722	4722		2.7352	0	1	53807			16006	23394	9028	9029	20243	20243					-0.028616240204655696
ISIAYTITHT	10	Unmodified	_ISIAYTITHT_					0	0	0		ENSG00000179546|ENST00000374619|HTR1D	ENSG00000179546|ENST00000374619|HTR1D	ENSG00000179546|ENST00000374619|HTR1D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7404174804688	2	560.305864	1118.59717	0.56616	0.00031722	-3.6645	-0.0020532	-3.0983	-0.001736	560.8054823155298	54.671	0.29528	54.655	54.55	54.845	-0.015923					14	10	2	0	0	0	0.31039	1	13022	13022		18.146	5.1039	1	111670			16007	7129	9029	9030	20244	20244					0.0426199478615672
ISIFMPRF	8	Unmodified	_ISIFMPRF_					0	0	0		NEK1|p.I1230Ffs*16|1|0.31|ENSG00000137601|chr4:169400300-169400300|T/-|frameshift_variant	NEK1|p.I1230Ffs*16|1|0.31|ENSG00000137601|chr4:169400300-169400300|T/-|frameshift_variant	NEK1|p.I1230Ffs*16|1|0.31|ENSG00000137601|chr4:169400300-169400300|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.82135009765625	2	505.778231	1009.54191	0.56701	0.00028678	0.10739	5.4315E-05	0.6744	0.0003411	505.7784337154285	55.011	1.4236	55.074	54.589	56.013	0.063202					82	52	2	0	0	0	0.33245	1	13306	13306		13.508	7.1538	1	332900			16008	13030	9030	9031	20245	20245					0.037519097847280136
ISIKPALAK	9	Unmodified	_ISIKPALAK_					0	0	0			REV__ENSG00000124275|ENST00000440940|MTRR	REV__ENSG00000124275|ENST00000440940|MTRR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.3028259277344	2	470.813128	939.611703	0.36813	0.00017332	0.12162	5.7263E-05	0.48975	0.00023058	470.8131675470523	60.868	0.2583	60.965	60.752	61.01	0.096985					9	8	2	0	0	0	0.25323	1	14874	14874		10.074	2.1638	1	192240	+		16009	15227	9031	9032	20246	20246					0.13948111724982937
ISILFSVNFVS	11	Unmodified	_ISILFSVNFVS_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|253|1|anti-sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|253|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.51434326171875	3	409.232418	1224.67542	-0.58349	-0.00023878	0.70163	0.00028713	0.11813	4.8344E-05	409.2326545894521	35.203	0.57596	35.278	34.933	35.509	0.075306					43	20	3	0	0	0	0.33085	1	6999	6999		3.3557	1.2718	1	208620	+		16010	22751	9032	9033	20247	20247					0.0720742737139517
ISILQDKTL	9	Unmodified	_ISILQDKTL_					0	0	0			REV__ENSG00000163376|ENST00000417314|KBTBD8	REV__ENSG00000163376|ENST00000417314|KBTBD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2772216796875	2	515.810782	1029.60701	0.057728	2.9777E-05	0.75879	0.00039139	0.81652	0.00042117	515.8110683302604	33.401	0.77932	33.468	33.187	33.967	0.066704					58	27	3	0	0	0	0.24688	1	6429	6429		14.838	2.3067	1	390800	+		16011	17048	9033	9034	20248	20248					0.09339182791563871
ISITWPLLF	9	Unmodified	_ISITWPLLF_					0	0	0		nc|ENSG00000084734|Q14397|GCKR;ENSG00000084734|ENST00000264717|GCKR	nc|ENSG00000084734|Q14397|GCKR	nc|ENSG00000084734|Q14397|GCKR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.315673828125	2	545.320786	1088.62702	0.54327	0.00029626	-0.59842	-0.00032633	-0.05514	-3.0069E-05	545.319839345998	93.617	1.1566	93.703	93.06	94.217	0.08667					249	97	4	0	0	0	0.30166	1	24757	24757		8.5933	1.304	1	1281000			16012	1250	9034	9035	20249	20249					0.08624978522175297
ISIVLSLAW	9	Unmodified	_ISIVLSLAW_					0	0	0			REV__nc|ENSG00000120907|P35348-9|ADRA1A	REV__nc|ENSG00000120907|P35348-9|ADRA1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.78485107421875	2	501.305136	1000.59572	0.068185	3.4181E-05	-3.8271	-0.0019185	-3.7589	-0.0018844	501.3032949113331	35.524	0.28585	35.611	35.504	35.79	0.08625					12	9	2	0	0	0	0.21905	1	7098	7098		23.148	1.4018	1	186310	+		16013	22970	9035	9036	20250	20250					0.09544405488088614
ISIYTKSLV	9	Unmodified	_ISIYTKSLV_					0	0	0		ENSG00000134827|ENST00000257264|TCN1	ENSG00000134827|ENST00000257264|TCN1	ENSG00000134827|ENST00000257264|TCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2802734375	2	512.307875	1022.6012	0.047642	2.4407E-05	2.4572	0.0012588	2.5048	0.0012832	512.8120327886046	76.577	0.15463	76.63	76.539	76.694	0.053413					8	5	2	0	0	0	0.25526	1	19715	19715		4.3292	2.6766	1	78518			16014	3817	9036	9037	20251	20251					0.09080084279901257
ISKAEVLEV	9	Unmodified	_ISKAEVLEV_					0	0	0			REV__nc|ENSG00000087237|P11597-2|CETP	REV__nc|ENSG00000087237|P11597-2|CETP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7347106933594	2	494.289682	986.564812	0.50398	0.00024911	-0.67105	-0.00033169	-0.16707	-8.2581E-05	494.2889117337378	72.794	0.58703	72.765	72.455	73.042	-0.029305					35	20	3	0	0	0	0.17696	1	18573	18573		23.79	3.3752	1	183490	+		16015	13991	9037	9038	20252	20252					0.07099207383191697
ISKEDLIVD	9	Unmodified	_ISKEDLIVD_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7734985351562	2	516.284597	1030.55464	-0.09653	-4.9837E-05	1.4399	0.00074342	1.3434	0.00069358	516.2856246183314	24.86	0.42023	24.829	24.627	25.047	-0.03141					18	13	2	0	0	0	0.24848	1	3854	3854		13.906	0	1	76092	+		16016	23008	9038	9039	20253	20253					0.04058599657969353
ISKEKDVLWF	10	Unmodified	_ISKEKDVLWF_					0	0	0		nc|ENSG00000196083|Q9NPH3-3|IL1RAP;nc|ENSG00000196083|Q9NPH3-2|IL1RAP;ENSG00000196083|ENST00000447382|IL1RAP;nc|ENSG00000196083|Q9NPH3-5|IL1RAP	nc|ENSG00000196083|Q9NPH3-3|IL1RAP	nc|ENSG00000196083|Q9NPH3-3|IL1RAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.59246826171875	3	422.236051	1263.68632	0.15096	6.3741E-05	3.6329	0.0015339	3.7839	0.0015977	422.2381133508794	48.203	0.45077	48.203	48.156	48.606	0					23	15	2	0	0	0	0.31237	1	11039	11039		7.0371	4.6023	1	150300			16017	7820	9039	9040	20254	20254					0.0650282974570473
ISKGFHTI	8	Unmodified	_ISKGFHTI_					0	0	0		ENSG00000006116|ENST00000005284|CACNG3	ENSG00000006116|ENST00000005284|CACNG3	ENSG00000006116|ENST00000005284|CACNG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.27142333984375	2	451.758352	901.502152	0.14338	6.4771E-05	0.66	0.00029816	0.80337	0.00036293	451.7586002768054	49.358	0.32816	49.403	49.238	49.566	0.044891					20	11	2	0	0	0	0.34046	1	11406	11406		5.2307	0	1	89797			16018	353	9040	9041	20255	20255					0.0474610610565378
ISKKADLLF	9	Unmodified	_ISKKADLLF_					0	0	0		nc|ENSG00000163728|Q96N46-3|TTC14;nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8037109375	2	517.815867	1033.61718	0.34839	0.0001804	0.13375	6.926E-05	0.48214	0.00024966	517.8159099960898	58.291	0.9575	58.377	58.084	59.041	0.085621					82	33	3	0	0	0	0.17787	1	14291	14291		26.884	2.8631	1	5066800			16019	5723	9041	9042	20256	20256					0.10171790516778856
ISKKADLLF	9	Unmodified	_ISKKADLLF_					0	0	0		nc|ENSG00000163728|Q96N46-3|TTC14;nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	nc|ENSG00000163728|Q96N46-3|TTC14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8034057617188	2	517.815867	1033.61718	0.66547	0.00034459	-0.15225	-7.8837E-05	0.51322	0.00026576	517.8157585671908	58.481	0.91559	58.466	58.169	59.084	-0.014267					76	32	3	0	0	0	0.22188	1	14304	14304		20.454	0.039092	1	5812400			16020	5723	9041	9042	20257	20257					0.10171790516778856
ISKKMQPKP	9	Unmodified	_ISKKMQPKP_					0	0	0		ENSG00000166415|ENST00000360509|WDR72;WDR72|p.D837Mfs*7|1|0.32|ENSG00000166415|chr15:53615697-53615698|-/TTCAT|frameshift_variant	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.78759765625	2	528.815344	1055.61614	0.4011	0.00021211	0.42828	0.00022648	0.82938	0.00043859	528.8154450026213	28.981	0.59582	28.993	28.706	29.302	0.012266					32	20	2	0	0	0	0.25323	1	5172	5172		10.074	1.3285	1	217470			16021	6076	9042	9043	20258	20258					0.09055252876260056
ISKKMQPKP	9	Unmodified	_ISKKMQPKP_					0	0	0		ENSG00000166415|ENST00000360509|WDR72;WDR72|p.D837Mfs*7|1|0.32|ENSG00000166415|chr15:53615697-53615698|-/TTCAT|frameshift_variant	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3038330078125	2	528.815344	1055.61614	0.63514	0.00033587	-1.2543	-0.0006633	-0.61917	-0.00032743	528.8147998468756	40.365	0.55135	40.464	40.09	40.641	0.099407					35	19	2	0	0	0	0.22596	1	8632	8632		6.7232	0	1	389640			16022	6076	9042	9043	20259	20259					0.09055252876260056
ISKKMQPKP	9	Unmodified	_ISKKMQPKP_					0	0	0		ENSG00000166415|ENST00000360509|WDR72;WDR72|p.D837Mfs*7|1|0.32|ENSG00000166415|chr15:53615697-53615698|-/TTCAT|frameshift_variant	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	528.815344	1055.61614	0.59153	0.00031281	0.43902	0.00023216	1.0305	0.00054497	528.815225105568	28.988	0.77113	28.988	28.67	29.441	0	0.0029259	8.7958E-05	NaN	10.074	38	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167250			16023	6076	9042	9043							0.09055252876260056
ISKKMQPKP	9	Unmodified	_ISKKMQPKP_					0	0	0		ENSG00000166415|ENST00000360509|WDR72;WDR72|p.D837Mfs*7|1|0.32|ENSG00000166415|chr15:53615697-53615698|-/TTCAT|frameshift_variant	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.815344	1055.61614	0.34453	0.00018219	0.22951	0.00012137	0.57404	0.00030356	528.8153451651972	28.96	0.75559	28.974	28.699	29.454	0.013474	-0.011054	-0.00013363	NaN	10.074	36	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214020			16024	6076	9042	9043							0.09055252876260056
ISKLITRH	8	Unmodified	_ISKLITRH_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|3.544250815784157|0.2927699401366612|3.6|541.0|16|1|sense	L1PA6_dup546|chr2:49227587-49231532:-|3.544250815784157|0.2927699401366612|3.6|541.0|16|1|sense	L1PA6_dup546|chr2:49227587-49231532:-|3.544250815784157|0.2927699401366612|3.6|541.0|16|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7741394042969	2	484.306001	966.597449	0.4321	0.00020927	-0.18011	-8.7228E-05	0.25199	0.00012204	484.30587891616074	40.376	0.4952	40.376	40.193	40.688	0					28	17	2	0	0	0	0.34092	1	8627	8627		8.5933	0	1	241970			16025	12490	9043	9044	20260	20260					0.11281459296696994
ISKLRPCTWL	10	Unmodified	_ISKLRPCTWL_					0	0	0		ENST00000358912.4_1_2:64322136-64322178:-|nuORF	ENST00000358912.4_1_2:64322136-64322178:-|nuORF	ENST00000358912.4_1_2:64322136-64322178:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8474731445312	2	608.847176	1215.6798	0.60993	0.00037135	-0.4679	-0.00028488	0.14203	8.6475E-05	608.8469691643318	84.631	1.7943	84.631	84.405	86.2	0					202	67	4	0	0	0	0.40106	2	22159	22159;22506		3.2813	3.2813	1	2172800			16026	9654	9044	9045	20261;20262	20261					0.08058613313323804
ISKLRPCTWL	10	Unmodified	_ISKLRPCTWL_					0	0	0		ENST00000358912.4_1_2:64322136-64322178:-|nuORF	ENST00000358912.4_1_2:64322136-64322178:-|nuORF	ENST00000358912.4_1_2:64322136-64322178:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8475341796875	2	608.847176	1215.6798	0.10919	6.6482E-05	0.12936	7.876E-05	0.23855	0.00014524	608.8475197362113	81.286	1.0107	81.355	80.863	81.874	0.068993					116	48	4	0	0	0	0.40106	2	21125	21125;21190		3.2813	0.28607	1	330060			16027	9654	9044	9045	20263;20264	20263					0.08058613313323804
ISKLRPCTWL	10	Unmodified	_ISKLRPCTWL_					0	0	0		ENST00000358912.4_1_2:64322136-64322178:-|nuORF	ENST00000358912.4_1_2:64322136-64322178:-|nuORF	ENST00000358912.4_1_2:64322136-64322178:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8470458984375	2	608.847176	1215.6798	0.60642	0.00036922	-0.21119	-0.00012858	0.39523	0.00024063	608.8470173384787	83.949	2.9587	84.026	83.243	86.202	0.077095					317	115	4	0	0	0	0.40106	1	22183	22183		3.2813	3.2813	1	2064800			16028	9654	9044	9045	20265	20265					0.08058613313323804
ISKLRPCTWL	10	Unmodified	_ISKLRPCTWL_					0	0	0		ENST00000358912.4_1_2:64322136-64322178:-|nuORF	ENST00000358912.4_1_2:64322136-64322178:-|nuORF	ENST00000358912.4_1_2:64322136-64322178:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.3486328125	2	608.847176	1215.6798	0.38361	0.00023356	-0.15507	-9.4413E-05	0.22854	0.00013914	608.8471235616498	82.21	1.8068	82.186	81.474	83.281	-0.024048					154	73	3	0	0	0	0.40106	3	21266	21266;21346;21615		3.2813	3.2813	1	827070			16029	9654	9044	9045	20266;20267;20268	20266					0.08058613313323804
ISKLRYNPRF	10	Unmodified	_ISKLRYNPRF_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.90667724609375	3	431.919056	1292.73534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.688	1	42.688	42.188	43.188	0								0	0	0	0.3629	1	9313	9313		5.4027	0	1				16030	2162	9045	9046	20269	20269					0.10068162825291438
ISKLRYNPRF	10	Unmodified	_ISKLRYNPRF_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.2820739746094	3	431.919056	1292.73534	-0.072165	-3.1169E-05	1.8588	0.00080284	1.7866	0.00077167	432.25414726165883	42.323	0.35303	42.408	42.295	42.648	0.085197					18	12	2	0	0	0	0.31911	1	9201	9201		6.6304	6.1244	1	128610			16031	2162	9045	9046	20270	20270					0.10068162825291438
ISKNLTNPRGL	11	Unmodified	_ISKNLTNPRGL_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.9068603515625	3	404.906816	1211.69862	-0.20364	-8.2457E-05	0.2897	0.0001173	0.086056	3.4845E-05	404.9069229166114	16.149	0.77667	16.086	15.781	16.558	-0.062534					68	26	5	0	0	0	0.36257	1	1241	1241		9.2438	0.49199	1	392730			16032	1183	9046	9047	20271	20271					0.10123866208732579
ISKNLTNPRGL	11	Unmodified	_ISKNLTNPRGL_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	404.906816	1211.69862	-0.33336	-0.00013498	0.43182	0.00017485	0.098452	3.9864E-05	404.90695720290637	16.29	0.77163	16.176	15.866	16.638	-0.11434	0.041457	0.00010026	NaN	9.2438	63	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362850			16033	1183	9046	9047							0.10123866208732579
ISKNLTNPRGL	11	Unmodified	_ISKNLTNPRGL_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	404.906816	1211.69862	-0.20364	-8.2457E-05	0.2897	0.0001173	0.086056	3.4845E-05	404.9069229166114	16.149	0.77667	16.086	15.781	16.558	-0.062534	-0.048084	-7.2372E-05	NaN	9.2438	68	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392730			16034	1183	9046	9047							0.10123866208732579
ISKPNVISY	9	Unmodified	_ISKPNVISY_					0	0	0		ENSG00000186017|ENST00000452939|ZNF566;nc|ENSG00000186017|Q969W8-2|ZNF566	ENSG00000186017|ENST00000452939|ZNF566	ENSG00000186017|ENST00000452939|ZNF566	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8079833984375	2	510.78985	1019.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.587	1	53.587	53.087	54.087	0								0	0	0	0.18374	1	12666	12666		26.884	4.1474	1				16035	7581	9047	9048	20272	20272					0.05614627103034309
ISKPNVISY	9	Unmodified	_ISKPNVISY_					0	0	0		ENSG00000186017|ENST00000452939|ZNF566;nc|ENSG00000186017|Q969W8-2|ZNF566	ENSG00000186017|ENST00000452939|ZNF566	ENSG00000186017|ENST00000452939|ZNF566	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8077392578125	2	510.78985	1019.56515	0.50924	0.00026011	1.6422	0.00083884	2.1515	0.0010989	511.29157244782857	53.091	0.94031	53.147	52.8	53.74	0.056255					97	34	5	0	0	0	0.17787	1	12654	12654		26.884	4.1474	1	1424400			16036	7581	9047	9048	20273	20273					0.05614627103034309
ISKPNVISY	9	Unmodified	_ISKPNVISY_					0	0	0		ENSG00000186017|ENST00000452939|ZNF566;nc|ENSG00000186017|Q969W8-2|ZNF566	ENSG00000186017|ENST00000452939|ZNF566	ENSG00000186017|ENST00000452939|ZNF566	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.80804443359375	2	510.78985	1019.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.749	1	53.739	53.239	54.239	-0.0096054								0	0	0	0.19804	1	12708	12708		23.148	0.41214	1				16037	7581	9047	9048	20274	20274					0.05614627103034309
ISKPSVSAFFT	11	Unmodified	_ISKPSVSAFFT_					0	0	0		ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.3055419921875	2	592.321514	1182.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.525	1	85.525	85.025	86.025	0								0	0	0	0.34766	1	22468	22468		8.7454	0.83525	1				16038	2958	9048	9049	20275	20275					0.04446567820264136
ISKPSVSAFFT	11	Unmodified	_ISKPSVSAFFT_					0	0	0		ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.3065795898438	2	592.321514	1182.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.318	1	85.305	84.805	85.805	-0.01284								0	0	0	0.34766	1	22392	22392		8.7454	0.83525	1				16039	2958	9048	9049	20276	20276					0.04446567820264136
ISKPSVSAFFT	11	Unmodified	_ISKPSVSAFFT_					0	0	0		ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.3055419921875	2	592.321514	1182.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.622	1	85.613	85.113	86.113	-0.0090027								0	0	0	0.34766	1	22485	22485		8.7454	1.4562	1				16040	2958	9048	9049	20277	20277					0.04446567820264136
ISKQTREL	8	Unmodified	_ISKQTREL_					0	0	0		nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C;ENST00000598457.5_1_19:48593588-48602975:-|nuORF;ENST00000599063.5_1_19:48601366-48609786:-|nuORF	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.29779052734375	2	487.785099	973.555644	0.33037	0.00016115	3.2782	0.0015991	3.6086	0.0017602	487.7870091294519	58.201	0.48635	58.201	57.953	58.439	0					32	16	3	0	0	0	0.33293	1	14144	14144		14.838	1.7958	1	273270			16041	1988	9049	9050	20278	20278					0.06780858817523949
ISKTVVLGLA	10	Unmodified	_ISKTVVLGLA_					0	0	0		nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000157833|Q75VX8-2|GAREM2;ENSG00000157833|ENST00000401533|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2794189453125	2	500.823692	999.632832	0.42531	0.00021301	1.0026	0.00050212	1.4279	0.00071513	500.8241681948977	59.653	0.51321	59.642	59.372	59.886	-0.011486					21	17	2	0	0	0	0.31143	1	14557	14557		17.113	2.5312	1	161030			16042	5328	9050	9051	20279	20279					0.13300077033829893
ISKYARRF	8	Unmodified	_ISKYARRF_					0	0	0		nc|ENSG00000143951|O95876-3|WDPCP;nc|ENSG00000143951|O95876-2|WDPCP;ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP	nc|ENSG00000143951|O95876-3|WDPCP	nc|ENSG00000143951|O95876-3|WDPCP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2684326171875	2	520.803626	1039.5927	0.84498	0.00044007	3.3269	0.0017327	4.1719	0.0021728	520.8054897140055	37.258	0.46745	37.258	37.093	37.56	0					24	16	2	0	0	0	0.33293	1	7649	7649		10.074	0	1	231190			16043	4556	9051	9052	20280	20280					0.07448575153944148
ISKYNWIKQW	10	Unmodified	_ISKYNWIKQW_					0	0	0		ENST00000508678.1_1_5:14681688-14687767:+|nuORF;ENSG00000154124|ENST00000284274|OTULIN	ENST00000508678.1_1_5:14681688-14687767:+|nuORF	ENST00000508678.1_1_5:14681688-14687767:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.5710754394531	3	455.915312	1364.72411	-0.07737	-3.5274E-05	1.2223	0.00055727	1.1449	0.000522	455.9159112871684	18.912	0.41503	18.912	18.71	19.125	0					34	14	3	0	0	0	0.32148	1	2067	2067		1.4551	0.12547	1	96993			16044	5105	9052	9053	20281	20281					0.05633340731151293
ISKYNWIKQW	10	Unmodified	_ISKYNWIKQW_					0	0	0		ENST00000508678.1_1_5:14681688-14687767:+|nuORF;ENSG00000154124|ENST00000284274|OTULIN	ENST00000508678.1_1_5:14681688-14687767:+|nuORF	ENST00000508678.1_1_5:14681688-14687767:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.5711669921875	3	455.915312	1364.72411	-0.015738	-7.1751E-06	0.93633	0.00042689	0.92059	0.00041971	455.91578897788503	19.048	0.54848	18.93	18.734	19.283	-0.11739					39	19	3	0	0	0	0.32095	1	2096	2096		3.0723	1.7426	1	73785			16045	5105	9052	9053	20282	20282					0.05633340731151293
ISLCLFPLF	9	Unmodified	_ISLCLFPLF_					0	0	0			REV__nc|ENSG00000102539|O43193-2|MLNR	REV__nc|ENSG00000102539|O43193-2|MLNR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3484497070312	2	526.796089	1051.57763	0.33319	0.00017553	-1.052	-0.00055419	-0.71881	-0.00037866	526.7954012288134	27.433	0.43643	27.433	27.207	27.643	0					20	14	2	0	0	0	0.25417	1	4660	4660		8.5933	1.8701	1	76827	+		16046	14324	9053	9054	20283	20283					0.053899472417015204
ISLEDFMEKL	10	Unmodified	_ISLEDFMEKL_					0	0	0		nc|ENSG00000101346|Q9H488-2|POFUT1;ENSG00000101346|ENST00000375749|POFUT1	nc|ENSG00000101346|Q9H488-2|POFUT1	nc|ENSG00000101346|Q9H488-2|POFUT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.2262878417969	3	408.877535	1223.61078	-0.14432	-5.901E-05	1.2843	0.0005251	1.1399	0.00046609	408.87782792724204	24.244	0.42722	24.244	24.058	24.486	0					22	14	2	0	0	0	0.32082	1	3730	3730		3.3196	0.58445	1	31695			16047	1687	9054	9055	20284	20284					0.007914845031109508
ISLGAWITEI	10	Unmodified	_ISLGAWITEI_					0	0	0			REV__ENST00000537298.5_1_12:65952522-65981187:-|nuORF	REV__ENST00000537298.5_1_12:65952522-65981187:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8112182617188	2	551.810782	1101.60701	0.3832	0.00021145	-0.69966	-0.00038608	-0.31646	-0.00017463	551.8100096606204	23.385	1.0444	23.341	23.084	24.129	-0.044867					39	36	2	0	0	0	0.39935	1	3455	3455		3.5965	0	1	55009	+		16048	22092	9055	9056	20285	20285					0.06027182791558516
ISLGAWITEI	10	Unmodified	_ISLGAWITEI_					0	0	0			REV__ENST00000537298.5_1_12:65952522-65981187:-|nuORF	REV__ENST00000537298.5_1_12:65952522-65981187:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	551.810782	1101.60701	0.25766	0.00014218	-0.26582	-0.00014668	-0.0081585	-4.502E-06	551.8101839314205	23.383	0.35053	23.295	23.108	23.459	-0.08761	-0.022677	0.00030516	NaN	3.5965	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54158	+		16049	22092	9055	9056							0.06027182791558516
ISLGFPLLFFK	11	Unmodified	_ISLGFPLLFFK_					0	0	0		ENST00000589060.1_1_19:44598853-44598943:+|nuORF	ENST00000589060.1_1_19:44598853-44598943:+|nuORF	ENST00000589060.1_1_19:44598853-44598943:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.3848876953125	2	641.383917	1280.75328	0.61802	0.00039639	-0.63718	-0.00040868	-0.019165	-1.2292E-05	641.384807268107	93.247	1.8269	93.247	92.734	94.561	-0.00051117					305	153	3	0	0	0	0.44192	2	24790	24790;24900		5.7319	0.83484	1	573760			16050	12155	9056	9057	20286;20287	20286					0.12413485027445859
ISLIINTFY	9	Unmodified	_ISLIINTFY_					0	0	0		nc|ENSG00000183199|Q58FF7|HSP90AB3P	nc|ENSG00000183199|Q58FF7|HSP90AB3P	nc|ENSG00000183199|Q58FF7|HSP90AB3P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.76953125	2	542.307875	1082.6012	0.96609	0.00052392	0.62698	0.00034002	1.5931	0.00086393	542.3079056029262	55.923	0.48732	55.994	55.751	56.239	0.070885					37	17	3	0	0	0	0.24688	1	13312	13312		14.838	3.198	1	1315000			16051	12874	9057	9058	20288	20288					0.06320084279900584
ISLKELNARPL	11	Unmodified	_ISLKELNARPL_					0	0	0		ENSG00000152700|ENST00000402673|SAR1B	ENSG00000152700|ENST00000402673|SAR1B	ENSG00000152700|ENST00000402673|SAR1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.884033203125	2	627.382437	1252.75032	-0.033487	-2.1009E-05	-0.6194	-0.0003886	-0.65289	-0.00040961	627.3816317037266	103.61	1.0906	103.61	103.49	104.58	0					325	150	3	0	0	0	0.45108	1	27620	27620		4.5289	1.5336	1	28103000			16052	5036	9058	9059	20289	20289					0.1340560990265658
ISLKELNARPL	11	Unmodified	_ISLKELNARPL_					0	0	0		ENSG00000152700|ENST00000402673|SAR1B	ENSG00000152700|ENST00000402673|SAR1B	ENSG00000152700|ENST00000402673|SAR1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5907287597656	3	418.590717	1252.75032	0.050899	2.1306E-05	0.34955	0.00014632	0.40045	0.00016762	418.5908200967258	24.291	1.1659	24.252	23.592	24.758	-0.038927					118	40	4	0	0	0	0.40332	1	3703	3703		5.8681	1.462	1	396860			16053	5036	9058	9059	20290	20290					0.1340560990265658
ISLMEWALI	9	Oxidation (M)	_ISLM(Oxidation (M))EWALI_		ISLM(1)EWALI		ISLM(42)EWALI	0	0	1			REV__ENST00000485037.5_1_22:29664325-29670342:+|nuORF	REV__ENST00000485037.5_1_22:29664325-29670342:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.2925415039062	2	546.293911	1090.57327	0.17038	9.3077E-05	2.3109	0.0012625	2.4813	0.0013555	546.7964769037816	59.74	4.0388	59.835	59.325	63.364	0.095093					219	147	3	0	0	0	0.079066	1	14906	14906		42.095	9.3089	1	65158000	+		16054	21538	9059	9060	20291	20291		1008			0.031604380281578415
ISLQTLKKE	9	Unmodified	_ISLQTLKKE_					0	0	0		ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF	ENSG00000171490|ENST00000571133|RSL1D1	ENSG00000171490|ENST00000571133|RSL1D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2425537109375	2	530.324057	1058.63356	0.39209	0.00020794	1.4566	0.00077248	1.8487	0.00098041	530.324649932022	27.101	0.51472	27.09	26.984	27.499	-0.01156					24	17	2	0	0	0	0.25706	1	4647	4647		6.7232	0	1	52950			16055	6547	9060	9061	20292	20292					0.10658871682903737
ISLTSVLH	8	Unmodified	_ISLTSVLH_					0	0	0		ENSG00000138109|ENST00000260682|CYP2C9	ENSG00000138109|ENST00000260682|CYP2C9	ENSG00000138109|ENST00000260682|CYP2C9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2768249511719	2	435.258185	868.501818	-0.29909	-0.00013018	1.3567	0.00059052	1.0576	0.00046033	435.2587104098706	27.674	1.2234	27.653	26.926	28.15	-0.021412					66	42	2	0	0	0	0.33245	1	4795	4795		19.439	4.8573	1	99077			16056	4118	9061	9062	20293	20293					0.062306863857997996
ISMDLQLTNK	10	Oxidation (M)	_ISM(Oxidation (M))DLQLTNK_		ISM(1)DLQLTNK		ISM(250)DLQLTNK	0	0	1		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000472057.1_1_22:29727525-29736761:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.80810546875	2	589.807913	1177.60127	0.47909	0.00028257	-0.37482	-0.00022107	0.10428	6.1503E-05	589.8077589216431	36.712	1.328	36.8	36.336	37.664	0.08741					136	47	5	0	0	0	1.6624999999999999E-38	2	7489	7489;7540		253.32	166.99	1	3332400			16057	1556	9062	9063	20294;20295	20294		192			0.019577162175664853
ISMDLQLTNK	10	Oxidation (M)	_ISM(Oxidation (M))DLQLTNK_					0	0	1		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000472057.1_1_22:29727525-29736761:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	589.807913	1177.60127	0.5674	0.00033466	-0.42091	-0.00024825	0.1465	8.6406E-05	589.8076616231724	36.631	1.147	36.631	36.385	37.532	0	-0.10535	9.0199E-05	NaN	253.32	113	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3098600			16058	1556	9062	9063				192			0.019577162175664853
ISMDLQLTNK	10	Oxidation (M)	_ISM(Oxidation (M))DLQLTNK_					0	0	1		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000472057.1_1_22:29727525-29736761:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	589.807913	1177.60127	0.7898	0.00046583	-0.66055	-0.0003896	0.12926	7.6237E-05	589.8075537998526	36.685	1.0557	36.778	36.339	37.395	0.093014	0.041719	-0.00019249	NaN	253.32	115	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3391200			16059	1556	9062	9063				192			0.019577162175664853
ISMFRHSF	8	Unmodified	_ISMFRHSF_					0	0	0			REV__ENSG00000178814|ENST00000618853|OPLAH	REV__ENSG00000178814|ENST00000618853|OPLAH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7548217773438	2	512.755287	1023.49602	0.078115	4.0054E-05	-0.50935	-0.00026117	-0.43124	-0.00022112	512.7547485741194	29.165	0.72481	29.179	28.959	29.684	0.013474					54	25	3	0	0	0	0.42371	1	5256	5256		14.838	0	1	699670	+		16060	18047	9063	9064	20296	20296					-0.014787353975066253
ISMPDVDLHLK	11	Oxidation (M)	_ISM(Oxidation (M))PDVDLHLK_		ISM(1)PDVDLHLK		ISM(74)PDVDLHLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.5601806640625	3	428.560317	1282.65912	-0.048509	-2.0789E-05	-0.2285	-9.7928E-05	-0.27701	-0.00011872	428.5601732254851	44.253	0.58853	44.253	43.904	44.493	0					53	21	4	0	0	0	0.0079184	1	9790	9790		74.077	51.061	1	2353800			16061	3189	9064	9065	20297	20297		395			0.029099781429977156
ISMPDVDLHLK	11	Oxidation (M)	_ISM(Oxidation (M))PDVDLHLK_		ISM(1)PDVDLHLK		ISM(87)PDVDLHLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.56011962890625	3	428.560317	1282.65912	0.18112	7.7622E-05	-0.92773	-0.00039759	-0.7466	-0.00031996	428.5600653696975	44.708	0.85587	44.708	44.383	45.238	0					77	30	4	0	0	0	0.0016763	2	9949	9901;9949		87.442	52.652	1	1825700			16062	3189	9064	9065	20298;20299	20299		395			0.029099781429977156
ISMPDVDLHLK	11	Oxidation (M)	_ISM(Oxidation (M))PDVDLHLK_		ISM(1)PDVDLHLK		ISM(84)PDVDLHLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.5600891113281	3	428.560317	1282.65912	0.01865	7.9928E-06	-0.37284	-0.00015978	-0.35419	-0.00015179	428.5600731199937	44.138	0.47097	44.215	43.975	44.446	0.077515					45	17	3	0	0	0	0.0033936	2	9784	9738;9784		83.652	55.47	1	2096000			16063	3189	9064	9065	20300;20301	20301		395			0.029099781429977156
ISMPDVDLHLK	11	Oxidation (M)	_ISM(Oxidation (M))PDVDLHLK_		ISM(1)PDVDLHLK		ISM(65)PDVDLHLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.5599060058594	3	428.560317	1282.65912	0.11098	4.7561E-05	-1.4082	-0.00060352	-1.2973	-0.00055596	428.5600409999172	44.625	1.3622	44.694	44.349	45.712	0.068569					96	48	4	0	0	0	0.012127	2	9874	9874;9925		65.172	40.943	1	1840400			16064	3189	9064	9065	20302;20303	20302		395			0.029099781429977156
ISMPDVDLHLK	11	Oxidation (M)	_ISM(Oxidation (M))PDVDLHLK_		ISM(1)PDVDLHLK		ISM(70)PDVDLHLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.55999755859375	3	428.560317	1282.65912	-0.072677	-3.1146E-05	-1.3572	-0.00058166	-1.4299	-0.00061281	428.56009877620744	44.056	1.3428	44.14	43.115	44.458	0.083996					80	49	3	0	0	0	0.0096821	2	9761	9713;9761		70.345	45.388	1	2352100			16065	3189	9064	9065	20304;20305	20305		395			0.029099781429977156
ISMPDVDLHLK	11	Oxidation (M)	_ISM(Oxidation (M))PDVDLHLK_		ISM(1)PDVDLHLK		ISM(96)PDVDLHLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.55975341796875	3	428.560317	1282.65912	0.099113	4.2476E-05	-0.64691	-0.00027724	-0.5478	-0.00023477	428.56008915301794	44.586	0.73882	44.661	44.418	45.157	0.075047					69	26	4	0	0	0	0.001098	2	9863	9863;9909		95.507	60.717	1	1750100			16066	3189	9064	9065	20306;20307	20306		395			0.029099781429977156
ISMPDVDLNLK	11	Oxidation (M)	_ISM(Oxidation (M))PDVDLNLK_		ISM(1)PDVDLNLK		ISM(91)PDVDLNLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8287963867188	2	630.828846	1259.64314	0.6696	0.0004224	-2.5335	-0.0015982	-1.8639	-0.0011758	630.8285484291533	50.4	0.66051	50.4	50.077	50.738	0					73	23	4	0	0	0	0.0014237	1	11707	11707		90.964	68.306	1	834780			16067	3189	9065	9066	20308	20308		396			0.023702719060793243
ISMPDVDLNLK	11	Oxidation (M)	_ISM(Oxidation (M))PDVDLNLK_		ISM(1)PDVDLNLK		ISM(91)PDVDLNLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.8291625976562	2	630.828846	1259.64314	0.87825	0.00055403	-2.6408	-0.0016659	-1.7626	-0.0011119	630.8285401331626	50.383	0.71222	50.428	50.108	50.82	0.044891					71	25	4	0	0	0	0.0014237	1	11700	11700		90.964	62.47	1	704520			16068	3189	9065	9066	20309	20309		396			0.023702719060793243
ISMPDVDLNLK	11	Oxidation (M)	_ISM(Oxidation (M))PDVDLNLK_		ISM(1)PDVDLNLK		ISM(85)PDVDLNLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.3281860351562	2	630.828846	1259.64314	1.0203	0.0006436	-3.13	-0.0019745	-2.1098	-0.0013309	630.828384317286	50.463	0.75394	50.484	50.064	50.818	0.020691					80	27	4	0	0	0	0.0028803	2	11691	11691;11742		84.738	58.47	1	792890			16069	3189	9065	9066	20310;20311	20310		396			0.023702719060793243
ISMPDVDLNLK	11	Oxidation (M)	_ISM(Oxidation (M))PDVDLNLK_		ISM(1)PDVDLNLK		ISM(43)PDVDLNLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.3067016601562	2	630.828846	1259.64314	0.60842	0.00038381	0.55585	0.00035064	1.1643	0.00073445	630.8291167115009	50.99	0.62118	51	50.807	51.428	0.0095673					52	23	3	0	0	0	0.24928	1	11880	11880		42.835	32.761	1	768040			16070	3189	9065	9066	20312	20312		396			0.023702719060793243
ISMPDVGLNLK	11	Oxidation (M)	_ISM(Oxidation (M))PDVGLNLK_		ISM(1)PDVGLNLK		ISM(83)PDVGLNLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8262939453125	2	601.826106	1201.63766	0.5919	0.00035622	-0.67409	-0.00040568	-0.082186	-4.9462E-05	601.8258691208325	49.057	0.40864	49.057	48.883	49.292	0					38	14	3	0	0	0	0.0035703	1	11265	11265		83.278	61.688	1	507790			16071	3189	9066	9067	20313	20313		397			0.04490593114269359
ISMPDVGLNLK	11	Oxidation (M)	_ISM(Oxidation (M))PDVGLNLK_		ISM(1)PDVGLNLK		ISM(90)PDVGLNLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.826416015625	2	601.826106	1201.63766	0.60443	0.00036376	-0.32265	-0.00019418	0.28178	0.00016958	601.8259797094868	49.501	0.52701	49.501	49.292	49.819	0					41	18	3	0	0	0	0.0015209	1	11425	11425		89.609	66.951	1	448590			16072	3189	9066	9067	20314	20314		397			0.04490593114269359
ISMPDVGLNLK	11	Oxidation (M)	_ISM(Oxidation (M))PDVGLNLK_		ISM(1)PDVGLNLK		ISM(87)PDVGLNLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.826171875	2	601.826106	1201.63766	0.50384	0.00030323	-0.36819	-0.00022159	0.13565	8.1639E-05	601.825812375959	49.041	0.43588	49.086	48.906	49.342	0.044888					27	15	2	0	0	0	0.0017529	1	11275	11275		87.123	62.132	1	423410			16073	3189	9066	9067	20315	20315		397			0.04490593114269359
ISMPDVGLNLK	11	Oxidation (M)	_ISM(Oxidation (M))PDVGLNLK_		ISM(1)PDVGLNLK		ISM(42)PDVGLNLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.826171875	2	601.826106	1201.63766	0.26718	0.0001608	-0.30397	-0.00018294	-0.036784	-2.2137E-05	601.826065192176	49.512	0.56843	49.544	49.268	49.837	0.032043					46	20	4	0	0	0	0.087802	1	11432	11432		42.312	30.818	1	481290			16074	3189	9066	9067	20316	20316		397			0.04490593114269359
ISMPDVGLNLK	11	Oxidation (M)	_ISM(Oxidation (M))PDVGLNLK_					0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	601.826106	1201.63766	0.47639	0.00028671	-0.46172	-0.00027788	0.014671	8.8293E-06	601.8258035861226	49.502	0.50867	49.547	49.342	49.85	0.044891	0.01633	-0.00011128	NaN	89.609	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	481020			16075	3189	9066	9067				397			0.04490593114269359
ISMSDIDLNLK	11	Oxidation (M)	_ISM(Oxidation (M))SDIDLNLK_		ISM(1)SDIDLNLK		ISM(120)SDIDLNLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.8264770507812	2	632.826303	1263.63805	0.70551	0.00044646	-0.19518	-0.00012351	0.51033	0.00032295	632.8262906331291	50.029	0.37643	50.05	49.825	50.202	0.020695					22	13	2	0	0	0	1.1839E-05	1	11570	11570		122.57	74.821	1	358390			16076	3189	9067	9068	20317	20317		398			0.016779680434638067
ISMSDIDLNLK	11	Oxidation (M)	_ISM(Oxidation (M))SDIDLNLK_					0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	632.826303	1263.63805	0.33645	0.00021291	0.22587	0.00014294	0.56232	0.00035585	632.8262315516419	50.021	0.31938	50.021	49.819	50.138	0	0.014765	0.00051913	NaN	122.57	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270710			16077	3189	9067	9068				398			0.016779680434638067
ISMSDIDLNLK	11	Oxidation (M)	_ISM(Oxidation (M))SDIDLNLK_					0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	632.826303	1263.63805	0.60187	0.00038088	-0.41758	-0.00026426	0.18429	0.00011662	632.825957360472	49.904	0.44112	49.948	49.801	50.242	0.044888	-0.058086	-0.00029526	NaN	122.57	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279940			16078	3189	9067	9068				398			0.016779680434638067
ISMSRSTSF	9	Unmodified	_ISMSRSTSF_					0	0	0		ENST00000453838.2_1_1:182929095-182929497:-|nuORF	ENST00000453838.2_1_1:182929095-182929497:-|nuORF	ENST00000453838.2_1_1:182929095-182929497:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2840270996094	2	508.247492	1014.48043	0.22028	0.00011196	-3.089	-0.00157	-2.8687	-0.001458	508.2459165651534	38.06	0.19845	38.157	38.037	38.235	0.097527					8	6	2	0	0	0	0.24688	1	7892	7892		14.838	2.3067	1	55775			16079	10675	9068	9069	20318	20318					-0.026230667052118406
ISNARHFH	8	Unmodified	_ISNARHFH_					0	0	0		HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|80|2|sense	HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|80|2|sense	HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|80|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.27191162109375	2	491.2543	980.494047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.783	1	36.87	36.37	37.37	0.08741								0	0	0	0.33122	1	7508	7508		23.148	2.6948	1				16080	12423	9069	9070	20319	20319					0.003019719089024875
ISNDLLGEFF	10	Unmodified	_ISNDLLGEFF_					0	0	0			REV__nc|ENSG00000135899|Q9HB58-5|SP110	REV__nc|ENSG00000135899|Q9HB58-5|SP110	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3346557617188	2	577.790047	1153.56554	0.32083	0.00018538	0.71313	0.00041204	1.034	0.00059741	577.7901845552002	70.492	1.09	70.467	69.935	71.025	-0.024872					63	38	2	0	0	0	0.31267	1	17751	17751		10.074	0	1	1151100	+		16081	15768	9070	9071	20320	20320					-0.005099979677424926
ISNEEGYRHI	10	Unmodified	_ISNEEGYRHI_					0	0	0		ENST00000434918.6_1_2:162849795-162888681:-|nuORF;ENSG00000197635|ENST00000360534|DPP4	ENST00000434918.6_1_2:162849795-162888681:-|nuORF	ENST00000434918.6_1_2:162849795-162888681:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.5352478027344	3	406.53516	1216.58365	-0.35701	-0.00014514	1.7428	0.00070853	1.3858	0.00056339	406.53563971868317	18.748	0.66066	18.689	18.509	19.17	-0.058174					40	22	2	0	0	0	0.36786	1	2029	2029		5.4027	1.5568	1	141650			16082	7987	9071	9072	20321	20321					-0.015978629930259558
ISNFHVLLL	9	Unmodified	_ISNFHVLLL_					0	0	0		ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENST00000528388.5_1_11:47753749-47758242:-|nuORF;ENST00000525792.5_1_11:47746320-47755666:-|nuORF	ENSG00000109920|ENST00000263773|FNBP4	ENSG00000109920|ENST00000263773|FNBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.31640625	2	528.316035	1054.61752	0.33905	0.00017913	-0.48262	-0.00025498	-0.14358	-7.5853E-05	528.3161122657576	69.917	0.66784	69.983	69.637	70.304	0.066048					53	23	4	0	0	0	0.05341	1	17692	17692		51.63	11.68	1	417570			16083	2280	9072	9073	20322	20322					0.09239210236660256
ISNFHVLLL	9	Unmodified	_ISNFHVLLL_					0	0	0		ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENST00000528388.5_1_11:47753749-47758242:-|nuORF;ENST00000525792.5_1_11:47746320-47755666:-|nuORF	ENSG00000109920|ENST00000263773|FNBP4	ENSG00000109920|ENST00000263773|FNBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3161010742188	2	528.316035	1054.61752	0.4748	0.00025084	-0.45156	-0.00023857	0.02324	1.2278E-05	528.3160096860958	69.976	0.5471	69.953	69.701	70.248	-0.022087					46	19	3	0	0	0	0.074552	1	17703	17703		43.772	17.504	1	367420			16084	2280	9072	9073	20323	20323					0.09239210236660256
ISNGRIEV	8	Unmodified	_ISNGRIEV_					0	0	0			REV__nc|ENSG00000224543|A8MWD9|SNRPGP15	REV__nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	444.25091552734375	2	444.250892	886.48723	0.22975	0.00010207	-0.047884	-2.1273E-05	0.18186	8.0793E-05	444.250721904717	31.22	0.83959	31.261	30.933	31.772	0.040991					78	30	4	0	0	0	0.18275	1	5806	5806		46.021	7.8454	1	1811400	+		16085	23196	9073	9074	20324	20324					0.03944614237661881
ISNIYLNVF	9	Unmodified	_ISNIYLNVF_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7882080078125	2	541.797675	1081.5808	0.47294	0.00025624	1.1155	0.00060439	1.5885	0.00086063	541.7984138634599	67.574	0.85503	67.574	67.193	68.048	0					58	29	3	0	0	0	0.20626	1	16971	16971		22.736	3.4793	1	695730	+		16086	17857	9074	9075	20325	20325					0.04326913620070627
ISNLPTVKK	9	Unmodified	_ISNLPTVKK_					0	0	0		ENSG00000174156|ENST00000211122|GSTA3;ENSG00000243955|ENST00000334575|GSTA1;ENSG00000244067|ENST00000493422|GSTA2;ENSG00000182793|ENST00000370989|GSTA5	ENSG00000174156|ENST00000211122|GSTA3;ENSG00000243955|ENST00000334575|GSTA1	ENSG00000243955|ENST00000334575|GSTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.3135070800781	2	500.313492	998.612431	0.31824	0.00015922	0.17619	8.8152E-05	0.49443	0.00024737	500.31342857143414	24.97	1.6346	24.97	24.134	25.769	0					177	55	5	0	0	0	1.597E-16	5	3886	3838;3886;3928;3972;4017		208.35	67.721	1	3875900			16087	8563;6775	9075	9076	20326;20327;20328;20329;20330	20327					0.11306906374045411
ISNLPTVKK	9	Unmodified	_ISNLPTVKK_					0	0	0		ENSG00000174156|ENST00000211122|GSTA3;ENSG00000243955|ENST00000334575|GSTA1;ENSG00000244067|ENST00000493422|GSTA2;ENSG00000182793|ENST00000370989|GSTA5	ENSG00000174156|ENST00000211122|GSTA3;ENSG00000243955|ENST00000334575|GSTA1	ENSG00000243955|ENST00000334575|GSTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.31353759765625	2	500.313492	998.612431	0.2197	0.00010992	0.13471	6.7399E-05	0.35442	0.00017732	500.3135136724327	25.028	1.664	24.972	24.102	25.766	-0.055931					151	57	4	0	0	0	2.6179E-07	4	3920	3871;3920;3967;4013		169.92	52.163	1	4382100			16088	8563;6775	9075	9076	20331;20332;20333;20334	20332					0.11306906374045411
ISNLPTVKK	9	Unmodified	_ISNLPTVKK_					0	0	0		ENSG00000174156|ENST00000211122|GSTA3;ENSG00000243955|ENST00000334575|GSTA1;ENSG00000244067|ENST00000493422|GSTA2;ENSG00000182793|ENST00000370989|GSTA5	ENSG00000174156|ENST00000211122|GSTA3;ENSG00000243955|ENST00000334575|GSTA1	ENSG00000243955|ENST00000334575|GSTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3135986328125	2	500.313492	998.612431	-0.018221	-9.1164E-06	0.43829	0.00021928	0.42007	0.00021017	500.31363083575667	24.982	1.6222	24.951	24.142	25.764	-0.031408					160	56	4	0	0	0	2.1937E-08	5	3910	3815;3863;3910;3954;3996		179.28	48.06	1	3732900			16089	8563;6775	9075	9076	20335;20336;20337;20338;20339	20337					0.11306906374045411
ISNNYIFQ	8	Unmodified	_ISNNYIFQ_					0	0	0			REV__ENSG00000073756|ENST00000367468|PTGS2	REV__ENSG00000073756|ENST00000367468|PTGS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.32366943359375	2	499.750724	997.486896	0.42501	0.0002124	-0.025309	-1.2648E-05	0.3997	0.00019975	499.75067720128555	56.822	0.6838	56.901	56.652	57.336	0.078674					58	25	3	0	0	0	0.29855	1	13746	13746		24.674	12.142	1	1108900	+		16090	13781	9076	9077	20340	20340					-0.011948054821800724
ISNNYIFQ	8	Unmodified	_ISNNYIFQ_					0	0	0			REV__ENSG00000073756|ENST00000367468|PTGS2	REV__ENSG00000073756|ENST00000367468|PTGS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	499.750724	997.486896	0.48176	0.00024076	-0.13165	-6.5792E-05	0.35011	0.00017497	499.75064007224483	56.976	0.8356	56.976	56.66	57.495	0	-0.021868	-0.00010376	NaN	24.674	64	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1216100	+		16091	13781	9076	9077							-0.011948054821800724
ISNPACLVNVL	11	Unmodified	_ISNPACLVNVL_					0	0	0		nc|ENSG00000288460|A0A5F9ZH02|SMIM42	nc|ENSG00000288460|A0A5F9ZH02|SMIM42	nc|ENSG00000288460|A0A5F9ZH02|SMIM42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.8157958984375	2	571.815541	1141.61653	0.28246	0.00016152	0.10966	6.2705E-05	0.39212	0.00022422	571.8155339279784	63.187	1.1034	63.178	62.86	63.963	-0.0085526					125	39	5	0	0	0	0.2981	1	15640	15640		21.59	0	1	5247800			16092	13005	9077	9078	20341	20341					0.051386278054451395
ISNPFATKE	9	Unmodified	_ISNPFATKE_					0	0	0			REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.27398681640625	2	503.763832	1005.51311	0.3336	0.00016805	-0.70027	-0.00035277	-0.36668	-0.00018472	504.2648916110209	75.487	0.99686	75.539	74.946	75.943	0.052361					46	36	2	0	0	0	0.24289	1	19281	19281		13.042	0	1	277620	+		16093	16697	9078	9079	20342	20342					0.010574636892783928
ISNPIPIKV	9	Unmodified	_ISNPIPIKV_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7415466308594	2	490.810585	979.606617	0.69217	0.00033973	-0.59426	-0.00029167	0.097916	4.8058E-05	490.8102162519743	54.675	0.40192	54.675	54.462	54.864	0					27	14	2	0	0	0	0.042824	1	13000	13000		66.457	30.33	1	456120			16094	7876	9079	9080	20343	20343					0.11599807862364742
ISNPIPIKV	9	Unmodified	_ISNPIPIKV_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.74176025390625	2	490.810585	979.606617	0.6318	0.00031009	-0.49228	-0.00024162	0.13951	6.8475E-05	490.8101771188602	54.645	0.48172	54.709	54.459	54.941	0.063202					29	17	2	0	0	0	0.0080395	1	12979	12979		82.529	38.671	1	457130			16095	7876	9079	9080	20344	20344					0.11599807862364742
ISNPIPIKV	9	Unmodified	_ISNPIPIKV_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7416076660156	2	490.810585	979.606617	0.63854	0.0003134	-0.61642	-0.00030255	0.022118	1.0856E-05	490.8101562539484	54.717	0.5281	54.701	54.451	54.98	-0.015923					33	18	2	0	0	0	0.026033	1	12999	12999		72.968	36.841	1	541200			16096	7876	9079	9080	20345	20345					0.11599807862364742
ISNSHPLSL	9	Unmodified	_ISNSHPLSL_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;ENST00000599680.1_1_19:50162907-50164763:-|nuORF;ENST00000597636.5_1_19:50162907-50164809:-|nuORF;nc|ENSG00000126456|Q14653-3|IRF3;nc|ENSG00000126456|Q14653-2|IRF3	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2642822265625	2	484.263999	966.513445	0.13953	6.7571E-05	0.28154	0.00013634	0.42107	0.00020391	484.26405871077776	38.224	0.42607	38.224	38.034	38.46	0					27	14	2	0	0	0	0.0041491	2	7944	7944;7954		93.166	34.487	1	899680			16097	3272	9080	9081	20346;20347	20346					0.028848834091377284
ISNSHPLSL	9	Unmodified	_ISNSHPLSL_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;ENST00000599680.1_1_19:50162907-50164763:-|nuORF;ENST00000597636.5_1_19:50162907-50164809:-|nuORF;nc|ENSG00000126456|Q14653-3|IRF3;nc|ENSG00000126456|Q14653-2|IRF3	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2639465332031	2	484.263999	966.513445	0.29767	0.00014415	-0.0043488	-2.1059E-06	0.29332	0.00014205	484.26389501994237	38.201	0.47195	38.292	37.983	38.455	0.090881					30	16	2	0	0	0	0.0073901	2	7928	7928;7943		83.429	24.75	1	923340			16098	3272	9080	9081	20348;20349	20348					0.028848834091377284
ISNSHPLSL	9	Unmodified	_ISNSHPLSL_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;ENST00000599680.1_1_19:50162907-50164763:-|nuORF;ENST00000597636.5_1_19:50162907-50164809:-|nuORF;nc|ENSG00000126456|Q14653-3|IRF3;nc|ENSG00000126456|Q14653-2|IRF3	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.263916015625	2	484.263999	966.513445	0.23599	0.00011428	0.19028	9.2144E-05	0.42627	0.00020643	484.2640232102484	38.111	0.51183	38.209	37.953	38.465	0.097527					32	17	2	0	0	0	0.0073901	3	7893	7893;7898;7902		83.429	24.75	1	804850			16099	3272	9080	9081	20350;20351;20352	20350					0.028848834091377284
ISNTGGGDKV	10	Unmodified	_ISNTGGGDKV_					0	0	0			REV__nc|ENSG00000103222|P33527-8|ABCC1	REV__nc|ENSG00000103222|P33527-8|ABCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2430114746094	2	474.243264	946.471974	0.26586	0.00012608	-0.35901	-0.00017026	-0.093143	-4.4172E-05	474.24295385928014	21.418	0.56745	21.369	21.15	21.717	-0.049376					33	19	2	0	0	0	0.33594	1	2896	2896		15.248	0.8431	1	159660	+		16100	14359	9081	9082	20353	20353					-0.0034029735018066276
ISNVTLQW	8	Unmodified	_ISNVTLQW_					0	0	0		ENST00000072869.8_1_7:140394627-140394756:+|nuORF	ENST00000072869.8_1_7:140394627-140394756:+|nuORF	ENST00000072869.8_1_7:140394627-140394756:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7710876464844	2	480.761092	959.507631	0.35997	0.00017306	1.096	0.00052693	1.456	0.00069999	480.76126247086216	40.048	0.47619	40.148	39.977	40.453	0.099403					20	16	2	0	0	0	0.41087	1	8569	8569		18.146	1.2041	1	147330			16101	8778	9082	9083	20354	20354					0.026257848974637454
ISNVTLQW	8	Unmodified	_ISNVTLQW_					0	0	0		ENST00000072869.8_1_7:140394627-140394756:+|nuORF	ENST00000072869.8_1_7:140394627-140394756:+|nuORF	ENST00000072869.8_1_7:140394627-140394756:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	480.761092	959.507631	0.30571	0.00014697	-0.0027827	-1.3378E-06	0.30292	0.00014563	480.7610833449449	40.294	0.52634	40.294	40.078	40.604	0	0.073238	-0.0003005	NaN	18.146	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92537			16102	8778	9082	9083							0.026257848974637454
ISNYIRYH	8	Unmodified	_ISNYIRYH_					0	0	0		ENSG00000132010|ENST00000334213|ZNF20	ENSG00000132010|ENST00000334213|ZNF20	ENSG00000132010|ENST00000334213|ZNF20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2644653320312	2	533.277441	1064.54033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.582	1	24.551	24.051	25.051	-0.031408								0	0	0	0.36336	1	3792	3792		8.5933	1.8701	1				16103	3607	9083	9084	20355	20355					0.01063992020317528
ISPCLDEENC	10	Unmodified	_ISPCLDEENC_					0	0	0		ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS	ENSG00000188107|ENST00000503581|EYS	ENSG00000188107|ENST00000503581|EYS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.31640625	2	561.725732	1121.43691	0.69507	0.00039044	0.70036	0.00039341	1.3954	0.00078384	561.7259976998304	36.654	0.55878	36.747	36.339	36.898	0.093018					33	19	2	0	0	0	0.31358	1	7387	7387		9.3831	5.0539	1	169710			16104	7729	9084	9085	20356	20356					-0.11895044264656462
ISPGLSATSI	10	Unmodified	_ISPGLSATSI_					0	0	0		ENST00000367602.7_1_1:180168067-180168433:+|nuORF	ENST00000367602.7_1_1:180168067-180168433:+|nuORF	ENST00000367602.7_1_1:180168067-180168433:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7559509277344	2	473.266207	944.517862	0.036999	1.7511E-05	-2.3624	-0.001118	-2.3254	-0.0011005	473.2663162832008	30.919	0.60943	30.919	30.674	31.284	0					44	21	3	0	0	0	0.29038	1	5699	5699		24.021	2.2739	1	94450			16105	9743	9085	9086	20357	20357					0.04338347832049294
ISPGRYFLL	9	Unmodified	_ISPGRYFLL_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.F753Sfs*5|1|0.07|ENSG00000173193|chr3:122700811-122700812|-/C|frameshift_variant	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3084106445312	2	533.30821	1064.60187	0.43879	0.00023401	0.16515	8.8078E-05	0.60395	0.00032209	533.3081670194999	65.392	1.7781	65.392	64.91	66.688	0					126	63	4	0	0	0	0.04299	3	16319	16270;16319;16362		55.503	15.545	1	7245200			16106	6700	9086	9087	20358;20359;20360	20359					0.07214923719629951
ISPGRYFLL	9	Unmodified	_ISPGRYFLL_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.F753Sfs*5|1|0.07|ENSG00000173193|chr3:122700811-122700812|-/C|frameshift_variant	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.308349609375	2	533.30821	1064.60187	-0.028854	-1.5388E-05	0.88604	0.00047253	0.85719	0.00045715	533.3083996821895	65.274	2.3861	65.363	65.006	67.392	0.088882					184	86	3	0	0	0	0.04299	3	16276	16228;16276;16318		55.503	13.408	1	8035500			16107	6700	9086	9087	20361;20362;20363	20362					0.07214923719629951
ISPGRYFLL	9	Unmodified	_ISPGRYFLL_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.F753Sfs*5|1|0.07|ENSG00000173193|chr3:122700811-122700812|-/C|frameshift_variant	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.308349609375	2	533.30821	1064.60187	0.40117	0.00021395	0.29077	0.00015507	0.69194	0.00036902	533.3081723282213	65.4	1.4096	65.389	64.972	66.382	-0.011337					137	51	4	0	0	0	0.03069	2	16315	16267;16315		60.074	17.979	1	7499500			16108	6700	9086	9087	20364;20365	20365					0.07214923719629951
ISPKDIIHLQF	11	Unmodified	_ISPKDIIHLQF_					0	0	0			REV__nc|ENSG997|Q9N2J8|HERV-H-ENH3	REV__nc|ENSG997|Q9N2J8|HERV-H-ENH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.5871887207031	3	437.587084	1309.73942	0.13156	5.7569E-05	-0.30886	-0.00013515	-0.1773	-7.7585E-05	437.58693069624735	53.611	0.5965	53.602	53.329	53.925	-0.0096054					55	22	3	0	0	0	0.43513	1	12679	12679		6.6235	0.3891	1	611330	+		16109	23266	9087	9088	20366	20366					0.09694207528355037
ISPKSYTDKSF	11	Unmodified	_ISPKSYTDKSF_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8872985839844	3	424.887199	1271.63977	0.081961	3.4824E-05	-0.032577	-1.3842E-05	0.049384	2.0983E-05	424.8873499862606	30.029	1.5142	30.029	28.845	30.359	0					169	54	5	0	0	0	0.33189	2	5340	5340;5392		15.538	14.171	1	1340200	+		16110	18848	9088	9089	20367;20368	20367					0.014813451237387198
ISPKSYTDKSF	11	Unmodified	_ISPKSYTDKSF_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.887451171875	3	424.887199	1271.63977	-0.046473	-1.9746E-05	-0.19645	-8.3471E-05	-0.24293	-0.00010322	424.887375588714	29.782	1.6856	29.794	28.769	30.454	0.012266					244	58	7	0	0	0	0.23019	2	5396	5317;5396		23.016	8.2864	1	1429600	+		16111	18848	9088	9089	20369;20370	20370					0.014813451237387198
ISPMKELKS	9	Unmodified	_ISPMKELKS_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.80126953125	2	516.791535	1031.56852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.614	1	30.642	30.142	31.142	0.027946								0	0	0	0.23413	1	5624	5624		11.495	0	1		+		16112	13757	9089	9090	20371	20371					0.053995538853769176
ISPMKELKS	9	Unmodified	_ISPMKELKS_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.8014526367188	2	516.791535	1031.56852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.522	1	30.549	30.049	31.049	0.027157								0	0	0	0.21353	1	5591	5591		18.146	3.3081	1		+		16113	13757	9089	9090	20372	20372					0.053995538853769176
ISPNFHFH	8	Unmodified	_ISPNFHFH_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.24017333984375	2	499.745776	997.477	0.4356	0.00021769	-1.8054	-0.00090223	-1.3698	-0.00068454	499.74501178969626	39.687	0.5122	39.779	39.577	40.09	0.09267					27	17	2	0	0	0	0.34092	1	8471	8471		4.756	0	1	182920			16114	2464	9090	9091	20373	20373					-0.021839486969156496
ISPPVYVTL	9	Unmodified	_ISPPVYVTL_					0	0	0			REV__HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	REV__HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7889709472656	2	494.789318	987.564084	0.4838	0.00023938	-0.76675	-0.00037938	-0.28295	-0.00014	494.78890103091874	82.198	0.7393	82.198	81.968	82.708	0					52	26	3	0	0	0	0.14076	1	21507	21507		32.305	5.4218	1	364960	+		16115	16164	9091	9092	20374	20374					0.06980412734139918
ISPPVYVTL	9	Unmodified	_ISPPVYVTL_					0	0	0			REV__HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	REV__HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7890319824219	2	494.789318	987.564084	0.3298	0.00016318	-0.35031	-0.00017333	-0.020509	-1.0148E-05	494.78909719129814	82.122	0.71608	82.191	81.931	82.647	0.068993					61	29	3	0	0	0	0.088391	1	21404	21404		39.957	0	1	452370	+		16116	16164	9091	9092	20375	20375					0.06980412734139918
ISPRERRRASR	11	Unmodified	_ISPRERRRASR_					0	0	0		ENST00000374580.8_1_2:203242075-203242198:+|nuORF	ENST00000374580.8_1_2:203242075-203242198:+|nuORF	ENST00000374580.8_1_2:203242075-203242198:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.1462097167969	3	461.939514	1382.79671	0.0064598	2.984E-06	-1.2961	-0.0005987	-1.2896	-0.00059572	461.93843626951264	27.349	0.314	27.338	27.213	27.527	-0.01156					15	10	2	0	0	0	0.33303	1	4627	4627		2.4348	0.97967	1	87293			16117	9896	9092	9093	20376	20376					0.12062487577304637
ISPSRDNHYEF	11	Unmodified	_ISPSRDNHYEF_					0	0	0		nc|ENSG00000189180|Q06730|ZNF33A;ENSG00000189180|ENST00000432900|ZNF33A;nc|ENSG00000189180|Q06730-3|ZNF33A	nc|ENSG00000189180|Q06730|ZNF33A	nc|ENSG00000189180|Q06730|ZNF33A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.9330749511719	3	455.545836	1363.61568	0.26425	0.00012038	0.93519	0.00042602	1.1994	0.0005464	455.54631739441436	44.878	0.66416	44.946	44.567	45.232	0.068569					56	23	3	0	0	0	0.33122	1	10017	10017		4.4062	0	1	366460			16118	7805	9093	9094	20377	20377					-0.05158495309910904
ISQCEQLE	8	Unmodified	_ISQCEQLE_					0	0	0		nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant;nc|ENSG00000157106|Q96Q15-4|SMG1	nc|ENSG00000157106|Q96Q15-3|SMG1	nc|ENSG00000157106|Q96Q15-3|SMG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.2713317871094	2	475.2184	948.422247	0.36234	0.00017219	3.9563	0.0018801	4.3187	0.0020523	475.22069002040746	36.77	0.27337	36.858	36.706	36.98	0.087406					12	9	2	0	0	0	0.34092	1	7509	7509		13.508	0.97634	1	80142			16119	5279	9094	9095	20378	20378					-0.054027483505024065
ISQEQRKMIQ	10	Unmodified	_ISQEQRKMIQ_					0	0	0		ENST00000381215.3_1_12:133521939-133522296:-|nuORF	ENST00000381215.3_1_12:133521939-133522296:-|nuORF	ENST00000381215.3_1_12:133521939-133522296:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.9273681640625	3	420.895812	1259.66561	0.18848	7.9331E-05	0.022722	9.5638E-06	0.2112	8.8895E-05	420.8958830679519	36.399	0.50499	36.481	36.331	36.836	0.082355					28	17	2	0	0	0	0.31929	1	7405	7405		7.0371	0	1	334260			16120	9994	9095	9096	20379	20379					0.04615916094394379
ISQILPMP	8	Unmodified	_ISQILPMP_					0	0	0			REV__ENSG00000189350|ENST00000379558|TOGARAM2	REV__ENSG00000189350|ENST00000379558|TOGARAM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.7791442871094	2	449.756964	897.499375	-0.22024	-9.9055E-05	4.3636	0.0019626	4.1433	0.0018635	449.7586858408301	34.489	0.36807	34.567	34.336	34.704	0.077377					15	12	2	0	0	0	0.34185	1	6835	6835		10.183	0	1	54661	+		16121	18606	9096	9097	20380	20380					0.046525146564931674
ISQILTTSPS	10	Unmodified	_ISQILTTSPS_					0	0	0		ENSG00000171487|ENST00000390649|NLRP5	ENSG00000171487|ENST00000390649|NLRP5	ENSG00000171487|ENST00000390649|NLRP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.7899780273438	2	523.790047	1045.56554	0.45532	0.00023849	-0.48924	-0.00025626	-0.033922	-1.7768E-05	523.789693247548	24.254	1.58	24.215	23.039	24.619	-0.038927					96	55	2	0	0	0	0.37133	1	3594	3594		8.7454	0.58988	1	129600			16122	6545	9097	9098	20381	20381					0.04458002032242803
ISQLCLRRVF	10	Unmodified	_ISQLCLRRVF_					0	0	0			REV__ENSG00000109133|ENST00000504986|TMEM33	REV__ENSG00000109133|ENST00000504986|TMEM33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.7669677734375	3	412.241142	1233.7016	0.13694	5.6453E-05	-0.037341	-1.5394E-05	0.0996	4.1059E-05	412.24123012723675	31.442	0.25381	31.483	31.281	31.535	0.040991					15	8	2	0	0	0	0.32068	1	5887	5887		1.7423	0.67081	1	132660	+		16123	14630	9098	9099	20382	20382					0.09409418061886754
ISQLKEQIFE	10	Unmodified	_ISQLKEQIFE_					0	0	0		nc|ENSG00000260565|Q9NX77|ERVK13-1	nc|ENSG00000260565|Q9NX77|ERVK13-1	nc|ENSG00000260565|Q9NX77|ERVK13-1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.548828125	3	412.227444	1233.6605	0.19633	8.0932E-05	0.33973	0.00014005	0.53606	0.00022098	412.2273777894813	16.805	0.92177	16.743	16.205	17.127	-0.062534					74	32	4	0	0	0	0.37568	1	1456	1456		7.9454	0.84368	1	261790			16124	12983	9099	9100	20383	20383					0.053019355033939064
ISQLTKETFMF	11	Unmodified	_ISQLTKETFMF_					0	0	0			REV__nc|ENSG00000183977|A8MPX8-2|PP2D1	REV__nc|ENSG00000183977|A8MPX8-2|PP2D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.58612060546875	3	448.900451	1343.67952	0.14688	6.5935E-05	0.21078	9.4618E-05	0.35766	0.00016055	448.9006053544718	49.618	0.53159	49.663	49.425	49.957	0.044891					42	19	4	0	0	0	0.32912	1	11528	11528		11.631	6.5839	1	421980	+		16125	18297	9100	9101	20384	20384					0.021431488027928935
ISQLTKETFMF	11	Unmodified	_ISQLTKETFMF_					0	0	0			REV__nc|ENSG00000183977|A8MPX8-2|PP2D1	REV__nc|ENSG00000183977|A8MPX8-2|PP2D1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	448.900451	1343.67952	0.30962	0.00013899	0.23023	0.00010335	0.53985	0.00024234	448.90044753616587	49.613	0.54307	49.613	49.351	49.894	0	-0.029632	-1.1674E-05	NaN	11.631	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366390	+		16126	18297	9100	9101							0.021431488027928935
ISQLTKETFMF	11	Unmodified	_ISQLTKETFMF_					0	0	0			REV__nc|ENSG00000183977|A8MPX8-2|PP2D1	REV__nc|ENSG00000183977|A8MPX8-2|PP2D1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	448.900451	1343.67952	0.1591	7.1419E-05	0.27957	0.0001255	0.43867	0.00019692	448.90056583954123	49.632	0.45006	49.652	49.4	49.85	0.020695	0.0093735	5.4775E-05	NaN	11.631	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431260	+		16127	18297	9100	9101							0.021431488027928935
ISQMDKLLQ	9	Unmodified	_ISQMDKLLQ_					0	0	0			REV__ENST00000539855.5_1_11:95532492-95564417:+|nuORF	REV__ENST00000539855.5_1_11:95532492-95564417:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8164672851562	2	538.294442	1074.57433	0.7371	0.00039678	1.7911	0.00096414	2.5282	0.0013609	538.2964742147142	60.487	5.0164	60.476	59.763	64.78	-0.011341					631	183	6	0	0	0	0.068501	1	15163	15163		46.021	2.1627	1	228850000	+		16128	17288	9101	9102	20385	20385					0.040026523970709604
ISQNLVFKY	9	Unmodified	_ISQNLVFKY_					0	0	0		ENST00000377403.6_1_1:9328830-9329223:+|nuORF	ENST00000377403.6_1_1:9328830-9329223:+|nuORF	ENST00000377403.6_1_1:9328830-9329223:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2929077148438	2	556.310949	1110.60735	0.25606	0.00014245	-0.14742	-8.201E-05	0.10864	6.0438E-05	556.3109607715833	65.6	0.89647	65.688	65.243	66.139	0.088882					55	32	3	0	0	0	0.2322	1	16286	16286		20.454	8.8133	1	666900			16129	9935	9102	9103	20386	20386					0.05646602511410492
ISQRYQKF	8	Unmodified	_ISQRYQKF_					0	0	0		CON__P02663	CON__P02663	CON__P02663	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.2670288085938	2	535.293091	1068.57163	0.46225	0.00024744	-0.97287	-0.00052077	-0.51062	-0.00027333	535.2925586327452	38.28	0.61333	38.378	38.037	38.65	0.097527					38	21	3	0	0	0	0.32435	1	8003	8003		23.148	10.617	1	158890		+	16130	208	9103	9104	20387	20387					0.04008565054414248
ISQSSVHSCL	10	Unmodified	_ISQSSVHSCL_					0	0	0		nc|ENSG00000088448|Q9NXR5-2|ANKRD10;ENST00000489973.6_1_13:111545499-111546642:-|nuORF	nc|ENSG00000088448|Q9NXR5-2|ANKRD10	nc|ENSG00000088448|Q9NXR5-2|ANKRD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7606811523438	2	530.758223	1059.50189	0.52271	0.00027743	1.8642	0.00098946	2.387	0.0012669	530.7600415075926	40.027	1.3853	40.12	39.36	40.745	0.09267					81	49	2	0	0	0	0.091471	1	8470	8470		49.933	2.1843	1	369930			16131	12602	9104	9105	20388	20388					-0.02547681676492175
ISRLSRSSF	9	Unmodified	_ISRLSRSSF_					0	0	0			REV__nc|ENSG00000158805|Q8N554-2|ZNF276	REV__nc|ENSG00000158805|Q8N554-2|ZNF276	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3614501953125	2	526.795998	1051.57744	0.60649	0.0003195	-1.9789	-0.0010425	-1.3724	-0.00072299	526.7948331033673	30.206	0.33874	30.206	29.97	30.309	0					16	11	2	0	0	0	0.25417	1	5520	5520		0.52476	0	1	65451	+		16132	16824	9105	9106	20389	20389					0.05371663566097595
ISRNFFFYF	9	Unmodified	_ISRNFFFYF_					0	0	0		ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENST00000514335.1_1_5:37051847-37064632:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.883544921875	3	414.209836	1239.60768	0.21457	8.8876E-05	-1.4873	-0.00061606	-1.2728	-0.00052719	414.20923334508444	28.643	0.84229	28.639	28.359	29.202	-0.0042572					42	29	2	0	0	0	0.25123	1	4946	4946		8.1555	1.1184	1	115850			16133	11415	9106	9107	20390	20390					-0.002539777687388778
ISRNFFFYF	9	Unmodified	_ISRNFFFYF_					0	0	0		ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENST00000514335.1_1_5:37051847-37064632:+|nuORF	ENST00000514335.1_1_5:37051847-37064632:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8836669921875	3	414.209836	1239.60768	-0.012935	-5.3577E-06	-1.3179	-0.00054587	-1.3308	-0.00055123	414.2092153994584	28.645	0.5376	28.646	28.268	28.805	0.00046921					29	18	2	0	0	0	0.25123	1	4921	4921		12.241	2.0901	1	126110			16134	11415	9106	9107	20391	20391					-0.002539777687388778
ISRQQYRRALL	11	Unmodified	_ISRQQYRRALL_					0	0	0		ENST00000513432.5_1_18:13059017-13124766:+|nuORF;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENSG00000101639|ENST00000506447|CEP192	ENST00000513432.5_1_18:13059017-13124766:+|nuORF	ENST00000513432.5_1_18:13059017-13124766:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.2364807128906	3	468.612515	1402.81572	0.039236	1.8387E-05	-0.035921	-1.6833E-05	0.0033157	1.5538E-06	468.61252504968667	34.092	0.89449	34.159	33.824	34.718	0.066704					83	31	4	0	0	0	0.33236	1	6729	6729		4.4062	0.56024	1	862920			16135	1714	9107	9108	20392	20392					0.13042024148376186
ISRRASTTRCL	11	Unmodified	_ISRRASTTRCL_					0	0	0		ENST00000492039.6_1_2:68352461-68384592:-|nuORF	ENST00000492039.6_1_2:68352461-68384592:-|nuORF	ENST00000492039.6_1_2:68352461-68384592:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.5747375488281	3	421.903189	1262.68774	-0.24581	-0.00010371	3.3645	0.0014195	3.1187	0.0013158	422.23841397100244	19.317	0.50814	19.317	19.066	19.574	0					30	17	2	0	0	0	0.33025	1	2172	2172		3.8459	0	1	57933			16136	11188	9108	9109	20393	20393					0.0669014056281867
ISRRLKTCKS	10	Unmodified	_ISRRLKTCKS_					0	0	0			REV__ENSG00000122483|ENST00000690025|CCDC18	REV__ENSG00000122483|ENST00000690025|CCDC18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.7672119140625	2	596.353157	1190.69176	0.20015	0.00011936	0.77524	0.00046232	0.9754	0.00058168	596.3535761134706	52.055	0.62095	52.054	51.764	52.385	-0.00080872					37	22	2	0	0	0	0.31926	1	12153	12153		5.7319	1.4026	1	270160	+		16137	15159	9109	9110	20394	20394					0.10404230056542474
ISRRLKTCKS	10	Unmodified	_ISRRLKTCKS_					0	0	0			REV__ENSG00000122483|ENST00000690025|CCDC18	REV__ENSG00000122483|ENST00000690025|CCDC18	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	596.353157	1190.69176	0.42608	0.0002541	0.48879	0.00029149	0.91487	0.00054559	596.3534308159518	51.93	0.44875	51.93	51.702	52.151	0	-0.04637	-0.00015578	NaN	5.7319	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312390	+		16138	15159	9109	9110							0.10404230056542474
ISRRLKTCKS	10	Unmodified	_ISRRLKTCKS_					0	0	0			REV__ENSG00000122483|ENST00000690025|CCDC18	REV__ENSG00000122483|ENST00000690025|CCDC18	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	596.353157	1190.69176	0.51874	0.00030935	0.3644	0.00021731	0.88314	0.00052666	596.3533811230913	51.895	0.44334	51.946	51.729	52.172	0.050571	-0.031191	-0.00030415	NaN	5.7319	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278350	+		16139	15159	9109	9110							0.10404230056542474
ISRRLSRPLGI	11	Unmodified	_ISRRLSRPLGI_					0	0	0			REV__ENSG00000171495|ENST00000399564|MROH2B	REV__ENSG00000171495|ENST00000399564|MROH2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.27001953125	3	423.270089	1266.78844	-0.11765	-4.9799E-05	-0.13355	-5.6529E-05	-0.25121	-0.00010633	423.2700181808239	22.006	0.6563	22.006	21.763	22.42	0					51	23	3	0	0	0	0.33122	1	3045	3045		4.4062	0	1	299540	+		16140	17643	9110	9111	20395	20395					0.16571540607969837
ISRRTLWW	8	Unmodified	_ISRRTLWW_					0	0	0		ENST00000263360.10_1_11:85975216-85975276:+|nuORF	ENST00000263360.10_1_11:85975216-85975276:+|nuORF	ENST00000263360.10_1_11:85975216-85975276:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.327392578125	2	559.3169	1116.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.339	1	24.267	23.767	24.767	-0.072559								0	0	0	0.35843	1	3723	3723		10.824	0.75	1				16141	9005	9111	9112	20396	20396					0.06560264045265285
ISSDLFLYP	9	Unmodified	_ISSDLFLYP_					0	0	0		HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|447|3|anti-sense	HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|447|3|anti-sense	HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|447|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2828369140625	2	527.776408	1053.53826	0.46131	0.00024347	-0.57955	-0.00030587	-0.11824	-6.2405E-05	527.7757489141148	17.475	0.44966	17.475	17.296	17.746	0					25	15	2	0	0	0	0.26145	1	1673	1673		2.0598	0	1	31022			16142	12414	9112	9113	20397	20397					0.013635184918257437
ISSEGRDIP	9	Unmodified	_ISSEGRDIP_					0	0	0		ENST00000305366.7_1_3:149095461-149095638:-|nuORF	ENST00000305366.7_1_3:149095461-149095638:-|nuORF	ENST00000305366.7_1_3:149095461-149095638:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2512512207031	2	487.251089	972.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.278	1	20.168	19.668	20.668	-0.11003								0	0	0	0.22666	1	2490	2490		13.906	3.8321	1				16143	9264	9113	9114	20398	20398					0.0002798916684696451
ISSEWEYF	8	Unmodified	_ISSEWEYF_					0	0	0			REV__HECA|p.Q472Yfs*20|1|0.23|ENSG00000112406|chr6:139174481-139174491|GGCACCAGCTG/-|frameshift_variant	REV__HECA|p.Q472Yfs*20|1|0.23|ENSG00000112406|chr6:139174481-139174491|GGCACCAGCTG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.769287109375	2	530.73474	1059.45493	0.40882	0.00021697	0.84277	0.00044729	1.2516	0.00066426	530.7350687317082	47.378	0.64118	47.43	46.984	47.626	0.052574					41	23	2	0	0	0	0.34319	1	10804	10804		5.7604	0.52976	1	317150	+		16144	14776	9114	9115	20399	20399					-0.07242217955990782
ISSGWCHA	8	Unmodified	_ISSGWCHA_					0	0	0			REV__ENSG00000100453|ENST00000216341|GZMB	REV__ENSG00000100453|ENST00000216341|GZMB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.96051025390625	2	430.689613	859.364672	0.027735	1.1945E-05	-3.6891	-0.0015889	-3.6614	-0.0015769	430.6877343867389	37.082	0.32609	37.169	37.006	37.332	0.08741					15	11	2	0	0	0	0.34319	1	7624	7624		0.69038	0	1	52397	+		16145	14201	9115	9116	20400	20400					-0.07063545765424806
ISSIVSRRVQ	10	Unmodified	_ISSIVSRRVQ_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.8435668945312	2	572.843479	1143.67241	0.09268	5.3091E-05	-0.081662	-4.678E-05	0.011018	6.3113E-06	572.8434388252448	18.325	0.48721	18.325	18.127	18.614	0					26	16	2	0	0	0	0.40106	1	1913	1913		3.2813	0.97858	1	68353			16146	7771	9116	9117	20401	20401					0.10631597037263418
ISSLRANSLS	10	Unmodified	_ISSLRANSLS_					0	0	0			REV__ENST00000571347.1_1_17:4594671-4607406:-|nuORF	REV__ENST00000571347.1_1_17:4594671-4607406:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7404174804688	2	524.293288	1046.57202	0.21699	0.00011377	2.0905	0.001096	2.3074	0.0012098	524.294633696818	39.836	0.19076	39.836	39.723	39.914	0					9	6	2	0	0	0	0.31143	1	8413	8413		17.113	2.5312	1	60800	+		16147	16077	9117	9118	20402	20402					0.050599399836073644
ISSLSEELLHF	11	Unmodified	_ISSLSEELLHF_					0	0	0		ENST00000534336.1_1_11:65270530-65270659:+|nuORF	ENST00000534336.1_1_11:65270530-65270659:+|nuORF	ENST00000534336.1_1_11:65270530-65270659:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.22027587890625	3	425.559082	1273.65542	-0.13445	-5.7218E-05	-1.4859	-0.00063233	-1.6203	-0.00068955	425.55841703268806	26.775	0.56277	26.754	26.506	27.069	-0.021412					32	19	3	0	0	0	0.33094	1	4416	4416		7.4771	7.4771	1	140630			16148	11657	9118	9119	20403	20403					0.029536316407984486
ISSLVKPRVS	10	Unmodified	_ISSLVKPRVS_					0	0	0			REV__TNFRSF21|p.L570Sfs*3|1|0.07|ENSG00000146072|chr6:47234700-47234701|-/GAAGA|frameshift_variant	REV__TNFRSF21|p.L570Sfs*3|1|0.07|ENSG00000146072|chr6:47234700-47234701|-/GAAGA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3160400390625	2	543.337498	1084.66044	1.0096	0.00054856	1.8308	0.00099473	2.8404	0.0015433	543.3387467757984	33.696	0.65963	33.763	33.295	33.955	0.06636					39	23	2	0	0	0	0.31267	1	6530	6530		10.074	0	1	227770	+		16149	16327	9119	9120	20404	20404					0.12149980294066154
ISSQLFAEK	9	Unmodified	_ISSQLFAEK_					0	0	0			REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7694091796875	2	511.779482	1021.54441	0.16086	8.2324E-05	0.89662	0.00045887	1.0575	0.0005412	511.7812750505967	16.117	0.70717	16.117	15.867	16.574	0					96	24	5	0	0	0	0.23767	1	1204	1204		18.146	0.011366	1	622220	+		16150	18473	9120	9121	20405	20405					0.034500367233818
ISSSSSTVLQ	10	Unmodified	_ISSSSSTVLQ_					0	0	0		ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant;nc|ENSG00000153930|Q8N957-2|ANKFN1;ENSG00000153930|ENST00000682825|ANKFN1	ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant	ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.76458740234375	2	504.764029	1007.5135	0.12256	6.1866E-05	2.2242	0.0011227	2.3468	0.0011846	504.7652442866605	22.332	0.80756	22.283	21.948	22.755	-0.049377					41	27	2	0	0	0	0.25219	1	3091	3091		26.268	1.2772	1	94475			16151	43	9121	9122	20406	20406					0.010048386184735136
ISSWKAATI	9	Unmodified	_ISSWKAATI_					0	0	0		ENSG00000113749|ENST00000636584|HRH2;nc|ENSG00000113749|P25021|HRH2;nc|ENSG00000113749|P25021-2|HRH2	ENSG00000113749|ENST00000636584|HRH2	ENSG00000113749|ENST00000636584|HRH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7769775390625	2	488.776742	975.538931	0.41791	0.00020427	0.39382	0.00019249	0.81173	0.00039676	488.77666263451067	36.451	1.0002	36.451	36.093	37.093	0					67	35	3	0	0	0	0.15219	1	7435	7435		30.637	3.0077	1	476980			16152	2529	9122	9123	20407	20407					0.05018357931567152
ISSYYVQR	8	Unmodified	_ISSYYVQR_					0	0	0		nc|ENSG00000093217|O75191-2|XYLB;ENSG00000093217|ENST00000207870|XYLB	nc|ENSG00000093217|O75191-2|XYLB	nc|ENSG00000093217|O75191-2|XYLB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.274658203125	2	508.263999	1014.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.222	1	25.19	24.69	25.69	-0.031408								0	0	0	0.34492	1	3985	3985		16.942	0.79319	1				16153	1437	9123	9124	20408	20408					0.006768834091303688
ISTAAFFKH	9	Unmodified	_ISTAAFFKH_					0	0	0			REV__nc|ENSG00000134183|P19087|GNAT2	REV__nc|ENSG00000134183|P19087|GNAT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.30010986328125	2	511.276909	1020.53927	0.6729	0.00034404	0.88014	0.00044999	1.553	0.00079403	511.27694181174667	56.79	0.73957	56.771	56.568	57.308	-0.019077					37	26	3	0	0	0	0.17611	1	13622	13622		20.454	0	1	670870	+		16154	22993	9124	9125	20409	20409					0.029817776514164507
ISTAHSSTL	9	Unmodified	_ISTAHSSTL_					0	0	0		ENST00000589389.5_1_16:4854724-4855165:-|nuORF	ENST00000589389.5_1_16:4854724-4855165:-|nuORF	ENST00000589389.5_1_16:4854724-4855165:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.9345703125	2	458.740357	915.46616	0.32323	0.00014828	-0.32829	-0.0001506	-0.0050636	-2.3229E-06	458.7402834020631	44.636	0.51733	44.711	44.418	44.935	0.075047					28	18	2	0	0	0	0.1524	1	9910	9910		39.957	13.074	1	158040			16155	12163	9125	9126	20410	20410					0.005046041381433497
ISTATLENLL	10	Unmodified	_ISTATLENLL_					0	0	0		ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.8057250976562	2	537.805697	1073.59684	0.87771	0.00047204	-0.89186	-0.00047965	-0.014154	-7.6119E-06	537.8052881244512	37.487	0.67142	37.487	37.124	37.795	0					42	23	2	0	0	0	0.21126	1	7706	7706		31.268	5.0002	1	768490			16156	8231	9126	9127	20411	20411					0.06298575066330159
ISTATLENLL	10	Unmodified	_ISTATLENLL_					0	0	0		ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.3173217773438	2	537.805697	1073.59684	0.45602	0.00024525	-0.32124	-0.00017276	0.13479	7.2489E-05	537.8055909631605	37.409	0.62396	37.497	37.193	37.817	0.08741					55	22	3	0	0	0	0.24105	1	7682	7682		27.629	27.629	1	750170			16157	8231	9126	9127	20412	20412					0.06298575066330159
ISTKHTKIS	9	Unmodified	_ISTKHTKIS_					0	0	0		AluSg_dup22705|chr11:63582852-63583140:+|1.6660853550735777|0.0376293536133263|5.47|502.0|3|1|sense	AluSg_dup22705|chr11:63582852-63583140:+|1.6660853550735777|0.0376293536133263|5.47|502.0|3|1|sense	AluSg_dup22705|chr11:63582852-63583140:+|1.6660853550735777|0.0376293536133263|5.47|502.0|3|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.80072021484375	2	507.800749	1013.58694	0.19332	9.817E-05	-0.44957	-0.00022829	-0.25624	-0.00013012	507.8004913355174	26.337	0.91639	26.337	26.009	26.925	0					83	31	4	0	0	0	0.064268	1	4293	4293		47.594	0	1	1210600			16158	31	9127	9128	20413	20413					0.08069431851606623
ISTKRKKS	8	Unmodified	_ISTKRKKS_					0	0	0			REV__nc|ENSG00000163535|Q562F6-2|SGO2	REV__nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7659912109375	2	474.303458	946.592364	0.25762	0.00012219	0.75466	0.00035794	1.0123	0.00048012	474.30382144642147	63.715	0.38712	63.715	63.502	63.889	0					22	13	2	0	0	0	0.34247	1	15791	15791		8.5933	8.5933	1	439440	+		16159	17068	9128	9129	20414	20414					0.1169315543409084
ISTKRKKS	8	Unmodified	_ISTKRKKS_					0	0	0			REV__nc|ENSG00000163535|Q562F6-2|SGO2	REV__nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.8023376464844	2	474.303458	946.592364	0.36837	0.00017472	0.64701	0.00030688	1.0154	0.0004816	474.3037939381722	63.639	0.42513	63.735	63.477	63.902	0.095722					23	14	2	0	0	0	0.34247	1	15768	15768		8.5933	0	1	418690	+		16160	17068	9128	9129	20415	20415					0.1169315543409084
ISTRNSRK	8	Unmodified	_ISTRNSRK_					0	0	0		ENST00000182527.3_1_6:52362386-52362449:-|nuORF	ENST00000182527.3_1_6:52362386-52362449:-|nuORF	ENST00000182527.3_1_6:52362386-52362449:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2726745605469	2	481.280515	960.546476	0.14205	6.8364E-05	2.1715	0.0010451	2.3136	0.0011135	481.2811831994318	24.511	0.4877	24.511	24.248	24.736	0					25	15	2	0	0	0	0.34247	1	3702	3702		8.5933	1.304	1	53949			16161	8790	9129	9130	20416	20416					0.06462510251856202
ISTSFNPATL	10	Unmodified	_ISTSFNPATL_					0	0	0			REV__ENST00000469632.1_1_3:3170712-3173035:+|nuORF	REV__ENST00000469632.1_1_3:3170712-3173035:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3102416992188	2	525.776939	1049.53933	0.61304	0.00032232	-0.58488	-0.00030752	0.028159	1.4805E-05	525.7767469178129	72.638	0.81665	72.638	72.374	73.191	0					56	29	3	0	0	0	0.31629	1	18667	18667		10.074	0	1	339160	+		16162	21343	9130	9131	20417	20417					0.016537328607682866
ISTSQLKQF	9	Unmodified	_ISTSQLKQF_					0	0	0			REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	REV__nc|ENSG00000143493|Q9NVH2-4|INTS7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.2832641601562	2	526.292756	1050.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.325	1	44.4	43.9	44.9	0.075047								0	0	0	0.20639	1	9805	9805		20.454	3.3407	1		+		16163	16183	9131	9132	20418	20418					0.04769725614710296
ISTSSVFAK	9	Unmodified	_ISTSSVFAK_					0	0	0			REV__ENSG00000196646|ENST00000343979|ZNF136	REV__ENSG00000196646|ENST00000343979|ZNF136	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2687683105469	2	470.260925	938.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.327	1	55.398	54.898	55.898	0.070885								0	0	0	0.093871	1	13203	13203		47.749	5.9091	1		+		16164	18671	9132	9133	20419	20419					0.0355836517762782
ISTTDAIFV	9	Unmodified	_ISTTDAIFV_					0	0	0		nc|ENSG00000106366|P05121-2|SERPINE1;ENSG00000106366|ENST00000223095|SERPINE1	nc|ENSG00000106366|P05121-2|SERPINE1	nc|ENSG00000106366|P05121-2|SERPINE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7603759765625	2	483.760758	965.506963	0.2317	0.00011209	-0.81385	-0.00039371	-0.58215	-0.00028162	483.7602662799559	73.66	0.56685	73.629	73.314	73.881	-0.030655					47	20	3	0	0	0	0.1659	1	18819	18819		36.044	0	1	410190			16165	2076	9133	9134	20420	20420					0.02282945457761798
ISTTPKCFLEK	11	Unmodified	_ISTTPKCFLEK_					0	0	0		ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.89666748046875	3	422.89693	1265.66896	0.0099766	4.2191E-06	0.073508	3.1086E-05	0.083485	3.5305E-05	422.89685351488265	31.575	0.84164	31.616	31.281	32.123	0.040991					53	29	3	0	0	0	0.33432	1	5903	5903		19.144	1.572	1	853100			16166	8738	9134	9135	20421	20421					0.04675166148376775
ISTTVPTNVN	10	Unmodified	_ISTTVPTNVN_					0	0	0		ENST00000540714.1_1_9:5919686-5933837:-|nuORF;ENSG00000183354|ENST00000399933|KIAA2026;KIAA2026|p.N1948Kfs*5|1|0.04|ENSG00000183354|chr9:5920152-5920153|-/AGTCTCCAGC|frameshift_variant	ENST00000540714.1_1_9:5919686-5933837:-|nuORF	ENST00000540714.1_1_9:5919686-5933837:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2792358398438	2	523.279846	1044.54514	0.28276	0.00014796	-0.66245	-0.00034665	-0.3797	-0.00019869	523.2794476962251	29.34	0.68451	29.354	29.113	29.798	0.013474					49	23	3	0	0	0	0.27248	1	5266	5266		23.79	2.2528	1	313110			16167	7363	9135	9136	20422	20422					0.02464831372435583
ISTVDPSALMY	11	Unmodified	_ISTVDPSALMY_					0	0	0			REV__ENSG00000198743|ENST00000381151|SLC5A3	REV__ENSG00000198743|ENST00000381151|SLC5A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.3826293945312	2	598.797014	1195.57948	0.78676	0.00047111	0.21346	0.00012782	1.0002	0.00059893	598.7973173322824	37.076	0.41433	37.076	36.844	37.259	0					22	14	2	0	0	0	0.3239	1	7565	7565		12.241	2.8575	1	176640	+		16168	18853	9136	9137	20423	20423					-0.010490885309764053
ISTYRWLLVRF	11	Unmodified	_ISTYRWLLVRF_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.75994873046875	3	485.281995	1452.82415	0.37106	0.00018007	-0.064997	-3.1542E-05	0.30607	0.00014853	485.2819887689254	53.298	0.44493	53.289	53.166	53.611	-0.0096054					28	16	2	0	0	0	0.33287	1	12594	12594		1.3296	0.87513	1	339210	+		16169	23013	9137	9138	20424	20424					0.11585578064955371
ISVALLKPV	9	Unmodified	_ISVALLKPV_					0	0	0			REV__ENST00000576980.1_1_17:7255325-7255865:+|nuORF	REV__ENST00000576980.1_1_17:7255325-7255865:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.31549072265625	2	470.315503	938.616454	0.105	4.9381E-05	0.092905	4.3695E-05	0.1979	9.3076E-05	470.31540801950587	57.606	0.91311	57.606	57.246	58.159	0					57	32	2	0	0	0	0.14786	1	13940	13940		31.268	2.1868	1	1190600	+		16170	22454	9138	9139	20425	20425					0.14468995867741796
ISVALLKPV	9	Unmodified	_ISVALLKPV_					0	0	0			REV__ENST00000576980.1_1_17:7255325-7255865:+|nuORF	REV__ENST00000576980.1_1_17:7255325-7255865:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.31561279296875	2	470.315503	938.616454	0.16367	7.6975E-05	-0.010706	-5.0352E-06	0.15296	7.194E-05	470.31542253712274	57.47	0.89819	57.556	57.24	58.138	0.085621					65	32	3	0	0	0	0.10059	1	13849	13849		38.176	5.3899	1	1167300	+		16171	22454	9138	9139	20426	20426					0.14468995867741796
ISVALLKPV	9	Unmodified	_ISVALLKPV_					0	0	0			REV__ENST00000576980.1_1_17:7255325-7255865:+|nuORF	REV__ENST00000576980.1_1_17:7255325-7255865:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.3155212402344	2	470.315503	938.616454	0.087786	4.1287E-05	0.14231	6.6932E-05	0.2301	0.00010822	470.3154606842704	57.574	0.90938	57.556	57.229	58.138	-0.0172					63	33	3	0	0	0	0.069366	2	13914	13863;13914		45.7	5.7499	1	1281700	+		16172	22454	9138	9139	20427;20428	20428					0.14468995867741796
ISVEVFTIL	9	Unmodified	_ISVEVFTIL_					0	0	0		ENST00000409003.4_2_8:119209465-119209606:-|nuORF	ENST00000409003.4_2_8:119209465-119209606:-|nuORF	ENST00000409003.4_2_8:119209465-119209606:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.81402587890625	2	510.802426	1019.5903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.273	1	50.273	49.773	50.773	0								0	0	0	0.22065	1	11647	11647		15.847	1.2655	1				16173	10237	9139	9140	20429	20429					0.08128681905623125
ISVLLQVPF	9	Unmodified	_ISVLLQVPF_					0	0	0		ENSG00000176571|ENST00000518476|CNBD1	ENSG00000176571|ENST00000518476|CNBD1	ENSG00000176571|ENST00000518476|CNBD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2745361328125	2	508.312961	1014.61137	-0.1283	-6.5217E-05	-3.1435	-0.0015979	-3.2718	-0.0016631	508.3115022973953	25.088	0.37431	25.057	24.862	25.237	-0.03141					21	12	2	0	0	0	0.25622	1	3994	3994		7.2892	4.0079	1	58578			16174	6936	9140	9141	20430	20430					0.10464692005132292
ISVLLQVPF	9	Unmodified	_ISVLLQVPF_					0	0	0		ENSG00000176571|ENST00000518476|CNBD1	ENSG00000176571|ENST00000518476|CNBD1	ENSG00000176571|ENST00000518476|CNBD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	508.312961	1014.61137	0.26699	0.00013571	-3.6147	-0.0018374	-3.3477	-0.0017017	508.3110833530599	25.038	0.33645	25.038	24.902	25.239	0	-0.0020123	-9.6172E-05	NaN	10.824	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67444			16175	6936	9140	9141							0.10464692005132292
ISVLLQVPF	9	Unmodified	_ISVLLQVPF_					0	0	0		ENSG00000176571|ENST00000518476|CNBD1	ENSG00000176571|ENST00000518476|CNBD1	ENSG00000176571|ENST00000518476|CNBD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	508.312961	1014.61137	0.12097	6.1493E-05	-3.633	-0.0018467	-3.5121	-0.0017852	508.3111348568345	25.081	0.36134	25.025	24.888	25.25	-0.055931	-0.014901	-0.00011481	NaN	10.824	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83855			16176	6936	9140	9141							0.10464692005132292
ISVLVLPLF	9	Unmodified	_ISVLVLPLF_					0	0	0		ENSG00000121797|ENST00000399036|CCRL2;nc|ENSG00000121797|O00421-2|CCRL2	ENSG00000121797|ENST00000399036|CCRL2	ENSG00000121797|ENST00000399036|CCRL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.28955078125	2	500.825704	999.636855	0.50354	0.00025219	-2.6888	-0.0013466	-2.1853	-0.0010944	500.8248127815849	57.207	0.3637	57.207	56.986	57.35	0					21	13	2	0	0	0	0.18943	1	13803	13803		30.225	8.4782	1	150680			16177	3009	9141	9142	20431	20431					0.13702166527548343
ISVLVLPLF	9	Unmodified	_ISVLVLPLF_					0	0	0		ENSG00000121797|ENST00000399036|CCRL2;nc|ENSG00000121797|O00421-2|CCRL2	ENSG00000121797|ENST00000399036|CCRL2	ENSG00000121797|ENST00000399036|CCRL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.28973388671875	2	500.825704	999.636855	0.3577	0.00017914	-3.6113	-0.0018086	-3.2536	-0.0016295	500.8238816046709	57.144	0.30032	57.223	57.011	57.311	0.078674					18	10	2	0	0	0	0.18943	1	13762	13762		30.225	3.8835	1	188480			16178	3009	9141	9142	20432	20432					0.13702166527548343
ISVPVQSSL	9	Unmodified	_ISVPVQSSL_					0	0	0			REV__nc|ENSG00000198728|Q86U70-3|LDB1	REV__nc|ENSG00000198728|Q86U70-3|LDB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2712097167969	2	465.26875	928.522947	-0.014657	-6.8193E-06	0.045259	2.1057E-05	0.030602	1.4238E-05	465.2685423480969	28.831	0.69666	28.831	28.472	29.169	0					70	24	4	0	0	0	0.31038	1	5033	5033		7.2892	0	1	235540	+		16179	23163	9142	9143	20433	20433					0.05582651694669494
ISVRRLTPA	9	Unmodified	_ISVRRLTPA_					0	0	0		ENSG00000021488|ENST00000023064|SLC7A9	ENSG00000021488|ENST00000023064|SLC7A9	ENSG00000021488|ENST00000023064|SLC7A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2835998535156	2	506.816733	1011.61891	-0.079802	-4.0445E-05	0.20983	0.00010635	0.13003	6.5901E-05	506.8170461638652	13.696	0.71961	13.596	13.188	13.907	-0.10026					37	25	3	0	0	0	0.24848	1	396	396		13.906	7.1829	1	56855			16180	508	9143	9144	20434	20434					0.11356844325393922
ISVSIFSLVF	10	Unmodified	_ISVSIFSLVF_					0	0	0		nc|ENSG00000293504|Q99463|NPY6R	nc|ENSG00000293504|Q99463|NPY6R	nc|ENSG00000293504|Q99463|NPY6R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3053588867188	2	556.323525	1110.6325	0.5037	0.00028022	0.34232	0.00019044	0.84602	0.00047066	556.3234106986116	74.788	0.36631	74.757	74.585	74.951	-0.031487					20	12	2	0	0	0	0.2593	1	19148	19148		25.399	0	1	210980			16181	13020	9144	9145	20435	20435					0.0816065731398794
ISVSIFSLVF	10	Unmodified	_ISVSIFSLVF_					0	0	0		nc|ENSG00000293504|Q99463|NPY6R	nc|ENSG00000293504|Q99463|NPY6R	nc|ENSG00000293504|Q99463|NPY6R	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	556.323525	1110.6325	0.67877	0.00037762	0.81626	0.0004541	1.495	0.00083172	556.3239943749826	74.719	0.36819	74.719	74.566	74.934	0	-0.01894	3.3812E-05	NaN	25.399	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152710			16182	13020	9144	9145							0.0816065731398794
ISVYVDKL	8	Unmodified	_ISVYVDKL_					0	0	0			REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2522888183594	2	468.773668	935.532783	-0.19422	-9.1044E-05	0.44044	0.00020647	0.24622	0.00011542	468.77230439244835	14.55	0.23262	14.445	14.308	14.54	-0.10466					11	7	2	0	0	0	0.34367	1	721	721		1.8442	0	1	13277	+		16183	14576	9145	9146	20436	20436					0.06243839700039189
ISWAQAAWYR	10	Unmodified	_ISWAQAAWYR_					0	0	0			REV__ENST00000412025.5_1_2:158674937-158694792:-|nuORF	REV__ENST00000412025.5_1_2:158674937-158694792:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.91064453125	3	417.88049	1250.61964	-0.33125	-0.00013842	-0.25642	-0.00010715	-0.58767	-0.00024558	417.8802868487174	15.002	0.64783	15.002	14.701	15.348	0					47	22	3	0	0	0	0.31969	1	862	862		5.7834	0	1	240600	+		16184	20778	9146	9147	20437	20437					0.004356389744543776
ISWERKNCSAE	11	Unmodified	_ISWERKNCSAE_					0	0	0		ENST00000367059.3_2_1:207648258-207648378:+|nuORF	ENST00000367059.3_2_1:207648258-207648378:+|nuORF	ENST00000367059.3_2_1:207648258-207648378:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7433166503906	3	441.543438	1321.60848	-0.1987	-8.7734E-05	0.71226	0.00031449	0.51356	0.00022676	441.543647130789	12.858	0.31323	12.758	12.611	12.924	-0.099291					20	10	3	0	0	0	0.33349	1	277	277		0.36667	0	1	50638			16185	9721	9147	9148	20438	20438					-0.03945551181959672
ISWFHNGHRI	10	Unmodified	_ISWFHNGHRI_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.22900390625	3	422.887868	1265.64177	0.24326	0.00010287	1.9149	0.00080979	2.1582	0.00091266	423.2231989355131	54.461	0.46844	54.461	54.268	54.736	0					25	16	2	0	0	0	0.31696	1	12907	12907		10.151	0	1	358630			16186	975	9148	9149	20439	20439					0.019578634428853547
ISWIMIIMKLC	11	Unmodified	_ISWIMIIMKLC_					0	0	0			REV__ENSG00000204704|ENST00000377175|OR2W1	REV__ENSG00000204704|ENST00000377175|OR2W1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.91632080078125	3	450.916391	1349.72734	0.097729	4.4067E-05	-0.28288	-0.00012756	-0.18515	-8.3488E-05	450.91615416891904	17.723	1.4565	17.663	16.999	18.456	-0.060429					131	51	5	0	0	0	0.45202	1	1760	1760		4.4062	0	1	791950	+		16187	18961	9149	9150	20440	20440					0.0664680819768364
ISWLWLAAA	9	Unmodified	_ISWLWLAAA_					0	0	0			REV__ENSG00000156076|ENST00000286574|WIF1	REV__ENSG00000156076|ENST00000286574|WIF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.295654296875	2	515.789653	1029.56475	0.40321	0.00020797	3.866	0.001994	4.2692	0.002202	515.7923774240496	30.323	0.50771	30.323	30.167	30.674	0					29	17	2	0	0	0	0.24913	1	5636	5636		12.532	1.7076	1	282340	+		16188	16729	9150	9151	20441	20441					0.051152521738458745
ISWVCVHIR	9	Unmodified	_ISWVCVHIR_					0	0	0			REV__ENST00000493458.2_1_16:74346962-74347061:-|nuORF	REV__ENST00000493458.2_1_16:74346962-74347061:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2697143554688	2	556.805311	1111.59607	0.21886	0.00012186	2.1336	0.001188	2.3524	0.0013099	556.8062228601434	37.876	0.54767	37.974	37.654	38.202	0.097527					31	19	2	0	0	0	0.25938	1	7891	7891		4.3292	4.3292	1	219240	+		16189	21639	9151	9152	20442	20442					0.044735019362633466
ISWYKEHT	8	Unmodified	_ISWYKEHT_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2763671875	2	532.263999	1062.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.457	1	91.548	91.048	92.048	0.090668								0	0	0	0.36336	1	24276	24276		8.5933	0.68312	1				16190	5186	9152	9153	20443	20443					-0.015311165908542534
ISYAMVVSF	9	Unmodified	_ISYAMVVSF_					0	0	0			REV__ENSG00000165548|ENST00000298351|TMEM63C	REV__ENSG00000165548|ENST00000298351|TMEM63C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2825622558594	2	508.759704	1015.50485	0.17146	8.7231E-05	3.2621	0.0016596	3.4336	0.0017469	508.76081014482475	23.657	0.64783	23.584	23.257	23.905	-0.072559					29	22	2	0	0	0	0.25938	1	3420	3420		4.3292	1.44	1	74569	+		16191	17245	9153	9154	20444	20444					-0.002278065516861716
ISYAMVVSF	9	Unmodified	_ISYAMVVSF_					0	0	0			REV__ENSG00000165548|ENST00000298351|TMEM63C	REV__ENSG00000165548|ENST00000298351|TMEM63C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	508.759704	1015.50485	0.14167	7.2074E-05	3.4236	0.0017418	3.5653	0.0018139	508.76099746494486	23.442	0.66666	23.442	23.25	23.917	0	-0.085192	0.00036195	NaN	4.3292	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88887	+		16192	17245	9153	9154							-0.002278065516861716
ISYAMVVSF	9	Unmodified	_ISYAMVVSF_					0	0	0			REV__ENSG00000165548|ENST00000298351|TMEM63C	REV__ENSG00000165548|ENST00000298351|TMEM63C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.759704	1015.50485	0.33421	0.00017003	2.0254	0.0010304	2.3596	0.0012005	508.7604365181885	23.595	0.60083	23.556	23.364	23.965	-0.038927	0.028504	-0.0010608	NaN	4.3292	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102210	+		16193	17245	9153	9154							-0.002278065516861716
ISYDLSFDK	9	Unmodified	_ISYDLSFDK_					0	0	0		ENST00000366857.9_1_1:224548243-224563520:+|nuORF	ENST00000366857.9_1_1:224548243-224563520:+|nuORF	ENST00000366857.9_1_1:224548243-224563520:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2691040039062	2	544.268947	1086.52334	0.51296	0.00027919	0.13658	7.4334E-05	0.64954	0.00035352	544.2689888591195	52.454	0.60995	52.454	52.239	52.849	0					33	21	2	0	0	0	0.0028032	1	12310	12310		103.82	47.647	1	1230700			16194	9715	9154	9155	20445	20445					-0.01645973376139409
ISYDLSFDK	9	Unmodified	_ISYDLSFDK_					0	0	0		ENST00000366857.9_1_1:224548243-224563520:+|nuORF	ENST00000366857.9_1_1:224548243-224563520:+|nuORF	ENST00000366857.9_1_1:224548243-224563520:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2691650390625	2	544.268947	1086.52334	0.63768	0.00034707	-0.12119	-6.5961E-05	0.51649	0.00028111	544.2689497401307	52.35	0.75864	52.4	52.202	52.96	0.050575					43	27	2	0	0	0	0.016571	1	12290	12290		69.338	36.553	1	1036000			16195	9715	9154	9155	20446	20446					-0.01645973376139409
ISYQLLGTF	9	Unmodified	_ISYQLLGTF_					0	0	0		ENST00000457388.1_1_10:37626656-37627235:+|nuORF	ENST00000457388.1_1_10:37626656-37627235:+|nuORF	ENST00000457388.1_1_10:37626656-37627235:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7945556640625	2	521.2844	1040.55425	0.68857	0.00035894	-0.45082	-0.00023501	0.23775	0.00012393	521.2844258656562	77.23	3.3993	77.23	76.725	80.124	0					366	130	5	0	0	0	0.069366	1	19841	19841		45.7	1.8413	1	23301000			16196	10704	9155	9156	20447	20447					0.0355922472876955
ISYSDLRD	8	Unmodified	_ISYSDLRD_					0	0	0			REV__ENSG00000182348|ENST00000333190|ZNF804B	REV__ENSG00000182348|ENST00000333190|ZNF804B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.30206298828125	2	484.737814	967.461075	0.22914	0.00011107	2.1776	0.0010556	2.4067	0.0011666	484.73981375637186	70.396	1.2834	70.396	69.485	70.768	0					61	46	2	0	0	0	0.29634	1	17627	17627		14.838	0.93222	1	268770	+		16197	18193	9156	9157	20448	20448					-0.023956997244681588
ISYSDLRD	8	Unmodified	_ISYSDLRD_					0	0	0			REV__ENSG00000182348|ENST00000333190|ZNF804B	REV__ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	484.737814	967.461075	0.26398	0.00012796	3.219	0.0015604	3.483	0.0016883	484.739753941716	70.338	0.39291	70.399	70.209	70.602	0.060783	0.0090522	4.4833E-05	NaN	14.838	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178690	+		16198	18193	9156	9157							-0.023956997244681588
ISYSDLRD	8	Unmodified	_ISYSDLRD_					0	0	0			REV__ENSG00000182348|ENST00000333190|ZNF804B	REV__ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	484.737814	967.461075	0.33133	0.00016061	3.5227	0.0017076	3.8541	0.0018682	484.73966052228235	70.399	0.45019	70.374	70.16	70.611	-0.024872	-0.015275	0.00033931	NaN	14.838	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212900	+		16199	18193	9156	9157							-0.023956997244681588
ISYWWLGLIF	10	Unmodified	_ISYWWLGLIF_					0	0	0		HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|451|3|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|451|3|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|451|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.9295349121094	3	433.237504	1296.69068	-0.084534	-3.6623E-05	2.379	0.0010307	2.2945	0.00099407	433.2385337865389	32.702	1.6266	32.757	32.072	33.699	0.054375					98	58	3	0	0	0	0.31847	1	6256	6256		3.5871	2.1319	1	247680			16200	12418	9157	9158	20449	20449					0.05420338959265791
ITAELQKWLI	10	Unmodified	_ITAELQKWLI_					0	0	0			REV__ENSG00000155085|ENST00000424296|AK9	REV__ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.3134155273438	2	607.860806	1213.70706	0.44218	0.00026879	0.18405	0.00011188	0.62623	0.00038066	607.8608157253635	59.264	0.7338	59.25	58.806	59.54	-0.014267					46	19	3	0	0	0	0.318	1	14499	14499		3.9444	3.9444	1	570640	+		16201	16689	9158	9159	20450	20450					0.10875420125375967
ITAEQVKKV	9	Unmodified	_ITAEQVKKV_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.767578125	2	508.310949	1014.60735	0.28868	0.00014674	0.73437	0.00037329	1.023	0.00052003	508.31130431506915	17.359	0.29233	17.299	17.18	17.472	-0.060429					15	9	2	0	0	0	0.26188	1	1580	1580		1.6526	0	1	38443			16202	2434	9159	9160	20451	20451					0.10062602511425212
ITAEQVKKV	9	Unmodified	_ITAEQVKKV_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	508.310949	1014.60735	0.30139	0.0001532	0.19891	0.00010111	0.50031	0.00025431	508.3109753703789	17.294	0.29873	17.294	17.097	17.396	0	-0.013276	-0.00038005	NaN	1.6526	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27157			16203	2434	9159	9160							0.10062602511425212
ITALHVKLW	9	Unmodified	_ITALHVKLW_					0	0	0		ENST00000455621.1_1_1:178380756-178381056:+|nuORF	ENST00000455621.1_1_1:178380756-178381056:+|nuORF	ENST00000455621.1_1_1:178380756-178381056:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3198852539062	2	540.831852	1079.64915	0.49498	0.0002677	0.90123	0.00048741	1.3962	0.00075511	540.8320510277944	99.226	0.21262	99.219	99.056	99.269	-0.006897					42	27	2	0	0	0	0.25706	1	26548	26548		6.7232	1.4925	1	61294			16204	10689	9160	9161	20452	20452					0.11251202990615639
ITALHVKLW	9	Unmodified	_ITALHVKLW_					0	0	0		ENST00000455621.1_1_1:178380756-178381056:+|nuORF	ENST00000455621.1_1_1:178380756-178381056:+|nuORF	ENST00000455621.1_1_1:178380756-178381056:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	540.831852	1079.64915	0.074592	4.0342E-05	1.234	0.00066741	1.3086	0.00070775	540.8320878645911	99.131	0.21926	99.131	99.1	99.319	0	-0.044139	0.00027578	NaN	6.7232	36	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31891			16205	10689	9160	9161							0.11251202990615639
ITALLNVSR	9	Unmodified	_ITALLNVSR_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2789001464844	2	493.803291	985.59203	0.18541	9.1556E-05	0.71076	0.00035097	0.89617	0.00044253	493.80359213839404	31.32	0.54542	31.32	31.09	31.636	0					27	19	2	0	0	0	0.23784	1	5908	5908		19.257	3.4098	1	199580			16206	4126	9161	9162	20453	20453					0.09865735714242874
ITALLNVSR	9	Unmodified	_ITALLNVSR_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.803291	985.59203	0.30551	0.00015086	0.71944	0.00035526	1.0249	0.00050612	493.8035503021391	31.269	0.43726	31.31	31.098	31.535	0.040989	-0.0060612	-1.6549E-05	NaN	19.257	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237020			16207	4126	9161	9162							0.09865735714242874
ITALNRKQL	9	Unmodified	_ITALNRKQL_					0	0	0		ENSG00000277161|ENST00000614443|PIGW	ENSG00000277161|ENST00000614443|PIGW	ENSG00000277161|ENST00000614443|PIGW	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7931518554688	2	528.82984	1055.64513	0.81348	0.00043019	0.41981	0.00022201	1.2333	0.0006522	528.8304056826893	37.65	0.091324	37.65	37.587	37.679	0					4	2	2	0	0	0	0.24848	1	7774	7774		9.3831	2.66	1	41220			16208	8731	9162	9163	20454	20454					0.11953113496883816
ITAPPSRVL	9	Unmodified	_ITAPPSRVL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.29278564453125	2	477.292559	952.570566	-0.16467	-7.8595E-05	-0.1675	-7.9949E-05	-0.33217	-0.00015854	477.2929299893967	39.371	1.6479	39.371	39.04	40.688	0					158	59	5	0	0	0	0.064268	2	8328	8283;8328		47.594	17.37	1	2025300			16209	1476	9163	9164	20455;20456	20456					0.09238350685518526
ITAPPSRVL	9	Unmodified	_ITAPPSRVL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.2929382324219	2	477.292559	952.570566	0.12682	6.0533E-05	-0.4278	-0.00020419	-0.30098	-0.00014365	477.2927755122297	39.3	1.5073	39.392	39.078	40.585	0.09267					140	53	6	0	0	0	0.086462	2	8250	8250;8299		40.239	11.731	1	2014800			16210	1476	9163	9164	20457;20458	20457					0.09238350685518526
ITAPPSRVL	9	Unmodified	_ITAPPSRVL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.2928161621094	2	477.292559	952.570566	0.311	0.00014844	-0.68408	-0.00032651	-0.37308	-0.00017807	477.2927486466678	39.232	1.5459	39.331	39.017	40.563	0.099403					154	55	6	0	0	0	0.086462	2	8283	8234;8283		40.239	14.84	1	2125500			16211	1476	9163	9164	20459;20460	20460					0.09238350685518526
ITAQIQDI	8	Unmodified	_ITAQIQDI_					0	0	0			REV__nc|ENSG00000135387|Q14444-2|CAPRIN1	REV__nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.5701904296875	2	451.2531	900.491647	-0.083251	-3.7567E-05	0.92713	0.00041837	0.84388	0.0003808	451.25338733894876	30.277	0.86227	30.304	30.083	30.945	0.027157					49	30	2	0	0	0	0.34131	1	5707	5707		4.3292	0	1	478510	+		16212	15739	9164	9165	20461	20461					0.03742078660570769
ITAQIQDI	8	Unmodified	_ITAQIQDI_					0	0	0			REV__nc|ENSG00000135387|Q14444-2|CAPRIN1	REV__nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	451.2531	900.491647	0.23613	0.00010656	0.52033	0.0002348	0.75646	0.00034136	451.2531786237012	30.309	0.73733	30.337	30.103	30.841	0.027946	0.028024	-0.00012374	NaN	4.3292	46	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487640	+		16213	15739	9164	9165							0.03742078660570769
ITATNWCVT	9	Unmodified	_ITATNWCVT_					0	0	0			REV__ENST00000506603.5_1_5:79058805-79095436:+|nuORF	REV__ENST00000506603.5_1_5:79058805-79095436:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7838439941406	2	504.744585	1007.47462	0.30227	0.00015257	0.43418	0.00021915	0.73645	0.00037172	504.7446288798689	71.262	0.25824	71.323	71.148	71.407	0.060783					12	8	2	0	0	0	0.2451	1	18085	18085		10.824	0	1	160810	+		16214	17148	9165	9166	20462	20462					-0.028821652168971923
ITATVATFLL	10	Unmodified	_ITATVATFLL_					0	0	0		nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2	nc|ENSG00000107331|Q9BZC7|ABCA2	nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.29736328125	2	525.3157	1048.61685	0.3278	0.0001722	-0.0063231	-3.3216E-06	0.32147	0.00016887	525.3156028253898	67.182	0.47269	67.166	66.921	67.393	-0.016296					26	15	2	0	0	0	0.28434	1	16913	16913		25.399	1.3787	1	357090			16215	2121	9166	9167	20463	20463					0.09448370796940253
ITDLGQYYINI	11	Unmodified	_ITDLGQYYINI_					0	0	0			REV__ENSG00000197056|ENST00000359858|ZMYM1	REV__ENSG00000197056|ENST00000359858|ZMYM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2301025390625	3	438.230966	1311.67107	-0.013016	-5.7039E-06	-1.4426	-0.00063219	-1.4556	-0.00063789	438.2305316330414	21.928	0.78614	21.928	21.545	22.331	0					70	28	3	0	0	0	0.32493	1	3017	3017		19.987	0.84296	1	496150	+		16216	18705	9167	9168	20464	20464					0.027699181578782373
ITDLGQYYINI	11	Unmodified	_ITDLGQYYINI_					0	0	0			REV__ENSG00000197056|ENST00000359858|ZMYM1	REV__ENSG00000197056|ENST00000359858|ZMYM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.23004150390625	3	438.230966	1311.67107	-0.040203	-1.7618E-05	-1.3629	-0.00059727	-1.4031	-0.00061488	438.23060602112974	21.924	0.93805	21.875	21.405	22.343	-0.049376					79	33	4	0	0	0	0.39698	1	3017	3017		11.631	0.56609	1	479980	+		16217	18705	9167	9168	20465	20465					0.027699181578782373
ITDMPPLL	8	Unmodified	_ITDMPPLL_					0	0	0		ENSG00000115827|ENST00000375255|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2633361816406	2	450.248972	898.48339	-0.1549	-6.9742E-05	3.2571	0.0014665	3.1022	0.0013968	450.2509567355075	38.766	0.49638	38.766	38.434	38.931	0					37	17	3	0	0	0	0.2157	1	8148	8148		40.449	9.812	1	313590			16218	2679	9168	9169	20466	20466					0.03008808419599518
ITDMPPLL	8	Unmodified	_ITDMPPLL_					0	0	0		ENSG00000115827|ENST00000375255|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2632141113281	2	450.248972	898.48339	0.3415	0.00015376	2.9189	0.0013142	3.2604	0.001468	450.2506832755692	38.622	0.51356	38.72	38.407	38.921	0.097527					43	18	3	0	0	0	0.20019	1	8110	8110		42.968	10.663	1	371320			16219	2679	9168	9169	20467	20467					0.03008808419599518
ITDMPPLL	8	Unmodified	_ITDMPPLL_					0	0	0		ENSG00000115827|ENST00000375255|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	450.248972	898.48339	0.18751	8.4426E-05	4.3151	0.0019429	4.5026	0.0020273	450.25081510451025	38.69	0.48731	38.78	38.455	38.942	0.090881	0.024898	0.00022806	NaN	42.968	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288250			16220	2679	9168	9169							0.03008808419599518
ITDPHSPSRFR	11	Unmodified	_ITDPHSPSRFR_					0	0	0		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;nc|ENSG00000117298|P42892-2|ECE1;ENST00000531334.1_1_1:21546450-21548377:-|nuORF	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2300720214844	3	438.230071	1311.66838	-0.013016	-5.7039E-06	0.59998	0.00026293	0.58696	0.00025722	438.2305316330414	21.928	0.78614	21.928	21.545	22.331	0					70	28	3	0	0	0	0.2454	1	2972	2972		27.129	3.1647	1	496150			16221	2786	9169	9170	20468	20468					0.025015075435703693
ITDPHSPSRFR	11	Unmodified	_ITDPHSPSRFR_					0	0	0		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;nc|ENSG00000117298|P42892-2|ECE1;ENST00000531334.1_1_1:21546450-21548377:-|nuORF	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2300720214844	3	438.230071	1311.66838	0.066531	2.9156E-05	0.61542	0.0002697	0.68195	0.00029885	438.23062499159164	21.962	0.81042	21.862	21.498	22.308	-0.10034					78	29	4	0	0	0	0.2454	1	2984	2984		27.129	6.2577	1	533720			16222	2786	9169	9170	20469	20469					0.025015075435703693
ITDPHSPSRFR	11	Unmodified	_ITDPHSPSRFR_					0	0	0		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;nc|ENSG00000117298|P42892-2|ECE1;ENST00000531334.1_1_1:21546450-21548377:-|nuORF	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.2301330566406	3	438.230071	1311.66838	-0.040203	-1.7618E-05	0.67966	0.00029785	0.63946	0.00028023	438.23060602112974	21.924	0.93805	21.875	21.405	22.343	-0.049376					79	33	4	0	0	0	0.31096	1	2973	2973		21.241	2.0974	1	479980			16223	2786	9169	9170	20470	20470					0.025015075435703693
ITEAGYESQI	10	Unmodified	_ITEAGYESQI_					0	0	0			REV__ENST00000461622.1_1_7:65429142-65432870:-|nuORF	REV__ENST00000461622.1_1_7:65429142-65432870:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.258544921875	2	555.769311	1109.52407	0.18201	0.00010116	0.60019	0.00033357	0.7822	0.00043472	555.7696276260032	69.27	0.66707	69.27	69.006	69.673	0					53	23	3	0	0	0	0.33594	1	17441	17441		15.248	0.41021	1	915830	+		16224	17551	9170	9171	20471	20471					-0.02631178727074257
ITEAGYESQI	10	Unmodified	_ITEAGYESQI_					0	0	0			REV__ENST00000461622.1_1_7:65429142-65432870:-|nuORF	REV__ENST00000461622.1_1_7:65429142-65432870:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.258544921875	2	555.769311	1109.52407	0.18201	0.00010116	0.60019	0.00033357	0.7822	0.00043472	555.7696276260032	69.27	0.66707	69.27	69.006	69.673	0					53	23	3	0	0	0	0.30555	1	17441	17441		15.248	15.248	1	915830	+		16225	17551	9170	9171	20472	20472					-0.02631178727074257
ITERDQQYAP	10	Unmodified	_ITERDQQYAP_					0	0	0			REV__ENST00000511141.1_1_4:153717696-153717858:-|nuORF	REV__ENST00000511141.1_1_4:153717696-153717858:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9035339355469	3	407.535048	1219.58332	-0.3592	-0.00014639	-0.13112	-5.3435E-05	-0.49032	-0.00019982	407.5348368157894	25.479	0.36259	25.448	25.181	25.543	-0.031408					17	12	2	0	0	0	0.31597	1	4080	4080		5.4027	0	1	57319	+		16226	21806	9171	9172	20473	20473					-0.017692827128939825
ITFEKHEEWLT	11	Unmodified	_ITFEKHEEWLT_					0	0	0		nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.73980712890625	3	478.241753	1431.70343	0.0055449	2.6518E-06	0.095783	4.5808E-05	0.10133	4.8459E-05	478.2417711257253	61.199	0.6343	61.199	60.962	61.597	0					46	23	3	0	0	0	0.33296	1	15106	15106		0.40827	0	1	842200			16227	6570	9172	9173	20474	20474					0.0048470556084794225
ITFGSPFNK	9	Unmodified	_ITFGSPFNK_					0	0	0		nc|ENSG00000069431|O60706|ABCC9;ENSG00000069431|ENST00000261200|ABCC9	nc|ENSG00000069431|O60706|ABCC9	nc|ENSG00000069431|O60706|ABCC9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.27703857421875	2	505.768917	1009.52328	0.86675	0.00043838	-1.0159	-0.0005138	-0.14913	-7.5425E-05	505.76828770601713	50.215	0.41227	50.26	50.108	50.52	0.044891					24	14	2	0	0	0	0.18936	1	11613	11613		32.786	4.2988	1	416720			16228	906	9173	9174	20475	20475					0.018900714145161146
ITFTKTSK	8	Unmodified	_ITFTKTSK_					0	0	0			REV__FRYL|p.E2601Dfs*12|1|0.03|ENSG00000075539|chr4:48515162-48515163|-/TACTTTCA|frameshift_variant	REV__FRYL|p.E2601Dfs*12|1|0.03|ENSG00000075539|chr4:48515162-48515163|-/TACTTTCA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.2835388183594	2	463.271293	924.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.507	1	89.506	89.006	90.006	-0.00080872								0	0	0	0.36748	1	23676	23676		6.7232	1.4925	1		+		16229	13814	9174	9175	20476	20476					0.06274955557285011
ITFVPGLLP	9	Unmodified	_ITFVPGLLP_					0	0	0			REV__ENST00000487017.5_1_3:48608910-48609324:-|nuORF	REV__ENST00000487017.5_1_3:48608910-48609324:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7852783203125	2	478.794404	955.574254	0.1676	8.0248E-05	0.24947	0.00011944	0.41707	0.00019969	478.794444558141	82.137	0.78187	82.206	81.992	82.774	0.068985					49	31	2	0	0	0	0.155	1	21507	21507		30.225	7.0764	1	640560	+		16230	21559	9175	9176	20477	20477					0.09469020459391686
ITFYVKPLFII	11	Unmodified	_ITFYVKPLFII_					0	0	0			REV__Harlequin-int_dup372|chr10:84170027-84170994:-|2.229433011874135|0.252139802420439|3.14|509.0|51|1|anti-sense	REV__Harlequin-int_dup372|chr10:84170027-84170994:-|2.229433011874135|0.252139802420439|3.14|509.0|51|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.5541076660156	3	451.944209	1352.8108	0.36335	0.00016421	-2.0728	-0.00093678	-1.7094	-0.00077257	452.277807542908	48.495	0.67717	48.495	48.044	48.721	0					41	23	2	0	0	0	0.3322	1	11130	11130		1.2148	0.10508	1	243300	+		16231	22716	9176	9177	20478	20478					0.14850327233034477
ITGNMGLAMK	10	2 Oxidation (M)	_ITGNM(Oxidation (M))GLAM(Oxidation (M))K_		ITGNM(1)GLAM(1)K		ITGNM(72)GLAM(72)K	0	0	2		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2;nc|ENSG00000116171|P22307-4|SCP2;ENST00000488965.1_1_1:53516256-53516373:+|nuORF	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2652587890625	2	534.264827	1066.5151	0.53742	0.00028712	-0.078379	-4.1875E-05	0.45904	0.00024525	534.264788997315	20.383	0.98809	20.383	20.092	21.08	0					96	35	4	0	0	0	0.020018	2	2552	2499;2552		71.708	38.922	1	414670			16232	2710	9177	9178	20479;20480	20480		339;340			-0.01549566888775189
ITGNMGLAMK	10	2 Oxidation (M)	_ITGNM(Oxidation (M))GLAM(Oxidation (M))K_		ITGNM(1)GLAM(1)K		ITGNM(72)GLAM(72)K	0	0	2		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2;nc|ENSG00000116171|P22307-4|SCP2;ENST00000488965.1_1_1:53516256-53516373:+|nuORF	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.26513671875	2	534.264827	1066.5151	0.58996	0.00031519	-0.10054	-5.3716E-05	0.48941	0.00026148	534.2647726882273	20.637	0.96289	20.527	20.188	21.15	-0.11003					90	34	4	0	0	0	0.020018	2	2608	2557;2608		71.708	31.758	1	449950			16233	2710	9177	9178	20481;20482	20482		339;340			-0.01549566888775189
ITGNMGLAMK	10	2 Oxidation (M)	_ITGNM(Oxidation (M))GLAM(Oxidation (M))K_		ITGNM(1)GLAM(1)K		ITGNM(97)GLAM(97)K	0	0	2		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2;nc|ENSG00000116171|P22307-4|SCP2;ENST00000488965.1_1_1:53516256-53516373:+|nuORF	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2647705078125	2	534.264827	1066.5151	0.75	0.0004007	-0.12467	-6.6609E-05	0.62533	0.00033409	534.2647450427831	20.516	0.93707	20.463	20.151	21.088	-0.052912					83	33	3	0	0	0	0.0040945	2	2523	2523;2570		96.936	49.187	1	414500			16234	2710	9177	9178	20483;20484	20483		339;340			-0.01549566888775189
ITGSGSAADLF	11	Unmodified	_ITGSGSAADLF_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.275634765625	2	519.758746	1037.50294	0.48522	0.0002522	-1.6548	-0.00086009	-1.1696	-0.0006079	520.2600886216857	82.204	0.84952	82.204	81.995	82.844	0					39	30	2	0	0	0	0.29431	1	21424	21424		22.736	2.2827	1	419700			16235	4265	9178	9179	20485	20485					-0.014311440359733751
ITGTLKRPSL	10	Unmodified	_ITGTLKRPSL_					0	0	0		ENSG00000181790|ENST00000517894|ADGRB1	ENSG00000181790|ENST00000517894|ADGRB1	ENSG00000181790|ENST00000517894|ADGRB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8056030273438	2	543.337498	1084.66044	0.61429	0.00033377	-0.50203	-0.00027277	0.11226	6.0993E-05	543.337304575163	38.29	0.13506	38.381	38.32	38.455	0.090881					5	4	2	0	0	0	0.31642	1	7980	7980		10.8	2.8894	1	58392			16236	7249	9179	9180	20486	20486					0.12149980294088891
ITGTNFLGF	9	Unmodified	_ITGTNFLGF_					0	0	0			REV__nc|ENSG00000134765|Q08554-2|DSC1	REV__nc|ENSG00000134765|Q08554-2|DSC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80035400390625	2	485.255643	968.496732	0.26563	0.0001289	-0.023908	-1.1601E-05	0.24172	0.00011729	485.25547394251475	52.058	0.51716	52.108	51.846	52.363	0.050571					25	18	2	0	0	0	0.23783	1	12214	12214		7.9102	0	1	168930	+		16237	15700	9180	9181	20487	20487					0.011223825231923001
ITGWREQF	8	Unmodified	_ITGWREQF_					0	0	0			REV__nc|ENSG00000177675|Q9NR16-3|CD163L1	REV__nc|ENSG00000177675|Q9NR16-3|CD163L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.80078125	2	518.764166	1035.51378	0.4129	0.0002142	0.028202	1.463E-05	0.44111	0.00022883	518.7640835903825	45.986	0.35363	46.051	45.9	46.253	0.065048					17	12	2	0	0	0	0.3366	1	10269	10269		12.532	0.89125	1	137970	+		16238	18001	9181	9182	20488	20488					-0.002556968710223373
ITHAVVIKK	9	Unmodified	_ITHAVVIKK_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.80133056640625	2	504.831852	1007.64915	0.24594	0.00012416	-0.12732	-6.4277E-05	0.11862	5.9882E-05	504.8316796410865	16.364	0.321	16.301	16.121	16.442	-0.062532					22	10	3	0	0	0	0.25323	1	1310	1310		6.2058	4.146	1	44519			16239	7428	9182	9183	20489	20489					0.14563202990609625
ITHGMPALTLL	11	Oxidation (M)	_ITHGM(Oxidation (M))PALTLL_		ITHGM(1)PALTLL		ITHGM(44)PALTLL	0	0	1		Harlequin-int_dup373|chr10:84170978-84171612:-|2.1942972251223907|0.2294773950638092|3.26|500.0|1|1|sense	Harlequin-int_dup373|chr10:84170978-84171612:-|2.1942972251223907|0.2294773950638092|3.26|500.0|1|1|sense	Harlequin-int_dup373|chr10:84170978-84171612:-|2.1942972251223907|0.2294773950638092|3.26|500.0|1|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8313598632812	2	591.831191	1181.64783	0.56698	0.00033556	-0.97328	-0.00057602	-0.4063	-0.00024046	591.8306304272363	64.653	1.4343	64.653	63.997	65.431	0					109	52	4	0	0	0	0.082753	1	16143	16143		43.772	12.504	1	1062000			16240	12371	9183	9184	20490	20490		963			0.06427200839516445
ITHGMPALTLL	11	Oxidation (M)	_ITHGM(Oxidation (M))PALTLL_		ITHGM(1)PALTLL		ITHGM(69)PALTLL	0	0	1		Harlequin-int_dup373|chr10:84170978-84171612:-|2.1942972251223907|0.2294773950638092|3.26|500.0|1|1|sense	Harlequin-int_dup373|chr10:84170978-84171612:-|2.1942972251223907|0.2294773950638092|3.26|500.0|1|1|sense	Harlequin-int_dup373|chr10:84170978-84171612:-|2.1942972251223907|0.2294773950638092|3.26|500.0|1|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.8311767578125	2	591.831191	1181.64783	0.499	0.00029533	-0.95313	-0.00056409	-0.45413	-0.00026877	591.8306181282743	64.711	1.684	64.701	63.822	65.506	-0.0095291					120	61	3	0	0	0	0.010268	1	16035	16035		69.105	13.602	1	935490			16241	12371	9183	9184	20491	20491		963			0.06427200839516445
ITHLLSQIV	9	Unmodified	_ITHLLSQIV_					0	0	0		ENSG00000182606|ENST00000327628|TRAK1;nc|ENSG00000182606|Q9UPV9-2|TRAK1;nc|ENSG00000182606|Q9UPV9-3|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.8453674316406	2	512.313492	1022.61243	0.29522	0.00015125	-1.4477	-0.00074169	-1.1525	-0.00059045	512.3135825219706	43.536	0.29265	43.536	43.388	43.681	0					19	10	3	0	0	0	0.23783	1	9587	9587		12.532	4.6214	1	210620			16242	7303	9184	9185	20492	20492					0.10202906374047416
ITHLLSQIV	9	Unmodified	_ITHLLSQIV_					0	0	0		ENSG00000182606|ENST00000327628|TRAK1;nc|ENSG00000182606|Q9UPV9-2|TRAK1;nc|ENSG00000182606|Q9UPV9-3|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.8453369140625	2	512.313492	1022.61243	0.42453	0.00021749	-1.8687	-0.00095736	-1.4442	-0.00073987	512.313199785945	43.314	0.44983	43.392	43.234	43.684	0.077515					30	15	3	0	0	0	0.23783	1	9503	9503		12.532	0	1	145440			16243	7303	9184	9185	20493	20493					0.10202906374047416
ITHTSRNDEF	10	Unmodified	_ITHTSRNDEF_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.5870666503906	3	407.194915	1218.56291	-0.005674	-2.3104E-06	0.41183	0.00016769	0.40615	0.00016538	407.1951135426555	19.516	0.62406	19.46	19.253	19.877	-0.055693					46	21	3	0	0	0	0.32082	1	2279	2279		3.3196	0.58445	1	114080			16244	2916	9185	9186	20494	20494					-0.037624533727239395
ITHYIRAGV	9	Unmodified	_ITHYIRAGV_					0	0	0			REV__ENST00000539708.5_1_12:16513351-16516972:+|nuORF	REV__ENST00000539708.5_1_12:16513351-16516972:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2960205078125	2	515.295633	1028.57671	0.031395	1.6178E-05	0.45186	0.00023284	0.48325	0.00024902	515.2958054296683	30.74	1.0715	30.767	30.422	31.493	0.027157					86	38	3	0	0	0	0.13748	1	5617	5617		32.786	0.4802	1	2856600	+		16245	13401	9186	9187	20495	20495					0.06356868917032443
ITHYIVERRET	11	Unmodified	_ITHYIVERRET_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2916259765625	3	472.924647	1415.75211	0.21845	0.00010331	-0.76329	-0.00036098	-0.54484	-0.00025767	472.92425883130244	29.192	0.85191	29.204	28.802	29.654	0.012266					67	29	3	0	0	0	0.33316	1	5240	5240		2.084	2.084	1	576570			16246	5186	9187	9188	20496	20496					0.060866189205853516
ITIEPGLLL	9	Unmodified	_ITIEPGLLL_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.26116943359375	2	484.804968	967.595384	0.4572	0.00022165	0.087494	4.2418E-05	0.54469	0.00026407	484.80500623256955	84.256	0.41326	84.333	84.201	84.614	0.077095					25	16	2	0	0	0	0.2451	1	22106	22106		15.847	4.2069	1	119720			16247	1129;12595	9188	9189	20497	20497					0.11028985768246002
ITIEPGLLLK	10	Unmodified	_ITIEPGLLLK_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.8526611328125	2	548.85245	1095.69035	0.18206	9.9927E-05	0.24754	0.00013586	0.42961	0.00023579	548.852506929896	65.228	0.88499	65.228	64.96	65.845	0					93	31	4	0	0	0	0.0017661	3	16285	16237;16285;16329		110.55	44.096	1	3983000			16248	1129;12595	9189	9190	20498;20499;20500	20499					0.14632919239420517
ITIEPGLLLK	10	Unmodified	_ITIEPGLLLK_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.852783203125	2	548.85245	1095.69035	0.13807	7.5782E-05	0.31385	0.00017226	0.45193	0.00024804	548.8525441088863	65.162	1.0959	65.251	64.905	66.001	0.088882					109	40	4	0	0	0	0.0035533	3	16205	16205;16250;16296		100.09	47.381	1	3888200			16249	1129;12595	9189	9190	20501;20502;20503	20501					0.14632919239420517
ITIEPGLLLK	10	Unmodified	_ITIEPGLLLK_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8526611328125	2	548.85245	1095.69035	0.2217	0.00012168	0.23991	0.00013167	0.46161	0.00025336	548.8524912657468	65.239	0.88905	65.227	64.972	65.861	-0.011337					97	32	4	0	0	0	0.00039324	3	16277	16228;16277;16316		128.93	53.172	1	3978400			16250	1129;12595	9189	9190	20504;20505;20506	20505					0.14632919239420517
ITIEVFDKF	9	Unmodified	_ITIEVFDKF_					0	0	0		ENSG00000132182|ENST00000254508|NUP210;nc|ENSG00000132182|Q8TEM1-2|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8029174804688	2	556.305332	1110.59611	0.30046	0.00016715	-0.29674	-0.00016508	0.0037231	2.0712E-06	556.305329750293	74.435	1.8003	74.487	74.007	75.807	0.052361					194	64	4	0	0	0	0.25989	1	18965	18965		14.838	0	1	6811200			16251	3613	9190	9191	20507	20507					0.0452378041729844
ITIFGPIKN	9	Unmodified	_ITIFGPIKN_					0	0	0		ENST00000371142.8_1_10:98321826-98325078:-|nuORF	ENST00000371142.8_1_10:98321826-98325078:-|nuORF	ENST00000371142.8_1_10:98321826-98325078:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2936096191406	2	501.80276	1001.59097	0.15053	7.5536E-05	-3.7217	-0.0018676	-3.5712	-0.001792	501.8006368657025	22.646	0.31014	22.646	22.505	22.815	0					13	10	2	0	0	0	0.33018	1	3204	3204		4.3292	0	1	49341			16252	9812	9191	9192	20508	20508					0.09023521345329755
ITIFGPIKN	9	Unmodified	_ITIFGPIKN_					0	0	0		ENST00000371142.8_1_10:98321826-98325078:-|nuORF	ENST00000371142.8_1_10:98321826-98325078:-|nuORF	ENST00000371142.8_1_10:98321826-98325078:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	501.80276	1001.59097	0.11909	5.9761E-05	-3.5076	-0.0017601	-3.3885	-0.0017003	501.8010156764664	22.794	0.34271	22.707	22.54	22.883	-0.08761	0.030219	3.6335E-05	NaN	4.3292	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48131			16253	9812	9191	9192							0.09023521345329755
ITIIAMSAL	9	Unmodified	_ITIIAMSAL_					0	0	0		ENSG00000099250|ENST00000374867|NRP1	ENSG00000099250|ENST00000374867|NRP1	ENSG00000099250|ENST00000374867|NRP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.76348876953125	2	466.777896	931.54124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.495	1	23.456	22.956	23.956	-0.038927								0	0	0	0.21726	1	3463	3463		16.942	0	1				16254	1479	9192	9193	20509	20509					0.07273070345024735
ITIPITPAF	9	Unmodified	_ITIPITPAF_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.79217529296875	2	486.791861	971.569169	0.33163	0.00016144	-1.5434	-0.00075129	-1.2117	-0.00058986	486.7919657033583	87.83	0.62875	87.919	87.602	88.231	0.089195					59	35	2	0	0	0	0.22596	1	23172	23172		21.747	4.8044	1	272830			16255	8289	9193	9194	20510	20510					0.0822471659673738
ITIPITPAF	9	Unmodified	_ITIPITPAF_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7921142578125	2	486.791861	971.569169	0.39048	0.00019008	-2.6438	-0.001287	-2.2534	-0.0010969	486.79184965066486	87.956	1.2766	87.953	87.126	88.403	-0.0028381					91	65	2	0	0	0	0.1524	1	23196	23196		32.305	2.0807	1	268940			16256	8289	9193	9194	20511	20511					0.0822471659673738
ITIPLACKI	9	Unmodified	_ITIPLACKI_					0	0	0		ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.79217529296875	2	486.301539	970.588524	0.40112	0.00019506	-0.23181	-0.00011273	0.16931	8.2338E-05	486.3014678599158	88.153	0.27144	88.153	88.002	88.273	0					16	12	2	0	0	0	0.2451	1	23251	23251		15.847	6.4997	1	122570			16257	3294	9194	9195	20512	20512					0.10205349616001058
ITIPRRLPD	9	Unmodified	_ITIPRRLPD_					0	0	0			REV__ENST00000276960.7_1_9:37515899-37521812:-|nuORF	REV__ENST00000276960.7_1_9:37515899-37521812:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8322143554688	2	540.82984	1079.64513	0.54433	0.00029439	3.2594	0.0017628	3.8037	0.0020571	540.8325368674184	68.612	2.737	68.612	68.226	70.963	0					296	99	6	0	0	0	0.25112	1	17562	17562		16.149	1.3108	1	81383000	+		16258	16410	9195	9196	20513	20513					0.10849113496897189
ITIPRRLPD	9	Unmodified	_ITIPRRLPD_					0	0	0			REV__ENST00000276960.7_1_9:37515899-37521812:-|nuORF	REV__ENST00000276960.7_1_9:37515899-37521812:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.832275390625	2	540.82984	1079.64513	0.46712	0.00025263	3.2257	0.0017446	3.6929	0.0019972	540.8325338539388	68.534	2.4612	68.606	68.24	70.701	0.071938					290	88	6	0	0	0	0.2719	1	17694	17694		13.042	0.80181	1	80195000	+		16259	16410	9195	9196	20514	20514					0.10849113496897189
ITIPRRLPD	9	Unmodified	_ITIPRRLPD_					0	0	0			REV__ENST00000276960.7_1_9:37515899-37521812:-|nuORF	REV__ENST00000276960.7_1_9:37515899-37521812:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.83154296875	2	540.82984	1079.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.111	1	84.189	83.689	84.689	0.077095								0	0	0	0.24066	1	22028	22028		9.3831	0	1		+		16260	16410	9195	9196	20515	20515					0.10849113496897189
ITIPRRLPD	9	Unmodified	_ITIPRRLPD_					0	0	0			REV__ENST00000276960.7_1_9:37515899-37521812:-|nuORF	REV__ENST00000276960.7_1_9:37515899-37521812:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8320922851562	2	540.82984	1079.64513	0.60208	0.00032562	3.1189	0.0016868	3.721	0.0020124	540.8324534392195	68.627	2.7535	68.608	68.223	70.976	-0.01915					310	98	6	0	0	0	0.21447	3	17507	17507;17558;17615		21.537	2.175	1	81405000	+		16261	16410	9195	9196	20516;20517;20518	20516					0.10849113496897189
ITIQNPLARHR	11	Unmodified	_ITIQNPLARHR_					0	0	0		nc|ENSG00000145103|Q86SU0-5|ILDR1	nc|ENSG00000145103|Q86SU0-5|ILDR1	nc|ENSG00000145103|Q86SU0-5|ILDR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.1979675292969	3	440.261594	1317.76295	0.017847	7.8572E-06	-0.075071	-3.3051E-05	-0.057225	-2.5194E-05	440.2615400576768	23.798	0.76602	23.725	23.501	24.267	-0.072559					43	25	2	0	0	0	0.33236	1	3554	3554		4.4062	1.0865	1	126790			16262	12741	9196	9197	20519	20519					0.11678066085551109
ITIQVIKP	8	Unmodified	_ITIQVIKP_					0	0	0		chr10:16896411-16898996|348|15.53|0.79|4.29|-|0|TE_info:L1MDb,L1MDb_dup774,L1,LINE,acceptor,-,16895384,16896411|None,CUBN|13	chr10:16896411-16898996|348|15.53|0.79|4.29|-|0|TE_info:L1MDb,L1MDb_dup774,L1,LINE,acceptor,-,16895384,16896411|None,CUBN|13	chr10:16896411-16898996|348|15.53|0.79|4.29|-|0|TE_info:L1MDb,L1MDb_dup774,L1,LINE,acceptor,-,16895384,16896411|None,CUBN|13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2870788574219	2	456.299853	910.585153	0.21663	9.885E-05	2.2462	0.001025	2.4629	0.0011238	456.30087546098383	37.985	0.66531	38.076	37.877	38.542	0.090881					39	23	2	0	0	0	0.4354	1	7935	7935		10.824	0	1	139880			16263	116	9197	9198	20520	20520					0.1262842283366581
ITISWNPPEY	10	Unmodified	_ITISWNPPEY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.5870666503906	3	407.20464	1218.59209	-0.26078	-0.00010619	-0.64349	-0.00026203	-0.90428	-0.00036823	407.20426009968105	18.781	1.7466	18.723	18.285	20.031	-0.058172					76	61	2	0	0	0	0.32068	1	2279	2279		3.5871	0.85186	1	86279			16264	5186	9198	9199	20521	20521					-0.00846309076405305
ITKAWKKLF	9	Unmodified	_ITKAWKKLF_					0	0	0		ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2882080078125	2	567.855327	1133.6961	0.58427	0.00033178	-0.72222	-0.00041011	-0.13794	-7.8331E-05	567.8547911006495	78.58	0.70854	78.58	78.328	79.036	0					60	27	3	0	0	0	0.25706	1	20427	20427		6.7232	1.4925	1	427830			16265	7182	9199	9200	20522	20522					0.13460062541730622
ITKAWKKLF	9	Unmodified	_ITKAWKKLF_					0	0	0		ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	ENSG00000180346|ENST00000603357|TIGD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2880859375	2	567.855327	1133.6961	0.61259	0.00034786	-0.68497	-0.00038896	-0.072382	-4.1103E-05	567.8548055023167	78.466	0.82138	78.524	78.336	79.157	0.058151					67	32	3	0	0	0	0.25323	1	20405	20405		10.074	0	1	303660			16266	7182	9199	9200	20523	20523					0.13460062541730622
ITKDNKLYL	9	Unmodified	_ITKDNKLYL_					0	0	0		nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38	nc|ENSG00000170185|Q8NB14-2|USP38	nc|ENSG00000170185|Q8NB14-2|USP38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2764282226562	2	554.324057	1106.63356	0.060563	3.3572E-05	-1.9311	-0.0010705	-1.8706	-0.0010369	554.323001226607	28.603	0.42782	28.603	28.466	28.894	0.0004673					20	14	2	0	0	0	0.25706	1	5004	5004		6.7232	0	1	127630			16267	6429	9200	9201	20524	20524					0.08450871682885008
ITKEDLRY	8	Unmodified	_ITKEDLRY_					0	0	0		nc|ENSG00000180815|Q6ZN16-2|MAP3K15;nc|ENSG00000180815|Q6ZN16-3|MAP3K15;ENST00000518578.5_1_X:19378869-19431499:-|nuORF;ENSG00000180815|ENST00000338883|MAP3K15;ENST00000470101.1_1_X:19378869-19390989:-|nuORF	nc|ENSG00000180815|Q6ZN16-2|MAP3K15	nc|ENSG00000180815|Q6ZN16-2|MAP3K15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2852783203125	2	519.284931	1036.55531	0.53832	0.00027954	0.61257	0.0003181	1.1509	0.00059764	519.2851115432926	49.171	0.75821	49.171	48.97	49.729	0					55	27	3	0	0	0	0.029748	1	11346	11346		88.904	16.981	1	441450			16268	7203	9201	9202	20525	20525					0.03849439097643881
ITKEDLRY	8	Unmodified	_ITKEDLRY_					0	0	0		nc|ENSG00000180815|Q6ZN16-2|MAP3K15;nc|ENSG00000180815|Q6ZN16-3|MAP3K15;ENST00000518578.5_1_X:19378869-19431499:-|nuORF;ENSG00000180815|ENST00000338883|MAP3K15;ENST00000470101.1_1_X:19378869-19390989:-|nuORF	nc|ENSG00000180815|Q6ZN16-2|MAP3K15	nc|ENSG00000180815|Q6ZN16-2|MAP3K15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2850952148438	2	519.284931	1036.55531	0.30984	0.00016089	0.68027	0.00035325	0.99011	0.00051415	519.2851735896068	49.259	0.59974	49.304	49.045	49.645	0.044891					47	21	3	0	0	0	0.16041	1	11350	11350		49.933	4.2334	1	556290			16269	7203	9201	9202	20526	20526					0.03849439097643881
ITKFHFRML	9	Unmodified	_ITKFHFRML_					0	0	0			REV__ENST00000064778.8_1_11:73115379-73115817:-|nuORF	REV__ENST00000064778.8_1_11:73115379-73115817:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.8377685546875	2	596.836611	1191.65867	0.11454	6.836E-05	1.9299	0.0011518	2.0444	0.0012202	596.8378219544236	12.285	0.16954	12.285	12.194	12.364	0					12	5	3	0	0	0	0.35563	1	95	95		0.52476	0	1	49805	+		16270	19379	9202	9203	20527	20527					0.07050648004496907
ITKKANKVL	9	Unmodified	_ITKKANKVL_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.30218505859375	2	507.837134	1013.65972	0.42011	0.00021335	-0.52146	-0.00026482	-0.10136	-5.1472E-05	507.83681090894055	48.959	0.46957	48.959	48.798	49.267	0					24	16	2	0	0	0	0.23784	1	11252	11252		19.257	3.4098	1	420110	+		16271	22909	9203	9204	20528	20528					0.153431856450311
ITKLFNYHKV	10	Unmodified	_ITKLFNYHKV_					0	0	0		ENSG00000065154|ENST00000368845|OAT;ENST00000476917.5_1_10:126095965-126100767:-|nuORF	ENSG00000065154|ENST00000368845|OAT	ENSG00000065154|ENST00000368845|OAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.23492431640625	3	421.580041	1261.71829	0.13409	5.6531E-05	2.7507	0.0011596	2.8848	0.0012162	421.581417428962	20.166	0.17117	20.05	19.927	20.098	-0.11592					6	5	2	0	0	0	0.3213	1	2444	2444		1.9064	0.1641	1	33078			16272	807	9204	9205	20529	20529					0.09790242219469292
ITKLFNYHKV	10	Unmodified	_ITKLFNYHKV_					0	0	0		ENSG00000065154|ENST00000368845|OAT;ENST00000476917.5_1_10:126095965-126100767:-|nuORF	ENSG00000065154|ENST00000368845|OAT	ENSG00000065154|ENST00000368845|OAT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	421.580041	1261.71829	0.27134	0.00011439	2.0708	0.00087299	2.3421	0.00098739	421.5809386405211	20.059	0.18468	20.003	19.877	20.062	-0.055693	-0.023267	-9.2563E-05	NaN	1.9064	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21716			16273	807	9204	9205							0.09790242219469292
ITKLIFAKP	9	Unmodified	_ITKLIFAKP_					0	0	0		nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.8368530273438	2	515.836603	1029.65865	0.47677	0.00024593	-0.0093732	-4.8351E-06	0.46739	0.0002411	515.8364725720928	49.382	0.94431	49.382	49.105	50.05	0					86	34	4	0	0	0	0.18208	2	11386	11340;11386		26.268	7.895	1	2371700			16274	7811	9205	9206	20530;20531	20531					0.14500971276129349
ITKLIFAKP	9	Unmodified	_ITKLIFAKP_					0	0	0		nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.836669921875	2	515.836603	1029.65865	0.23118	0.00011925	0.29799	0.00015372	0.52917	0.00027297	515.83662143023	49.426	0.7473	49.471	49.184	49.932	0.044891					81	27	4	0	0	0	0.22215	2	11353	11353;11398		20.415	3.3016	1	2228600			16275	7811	9205	9206	20532;20533	20532					0.14500971276129349
ITKLIFAKP	9	Unmodified	_ITKLIFAKP_					0	0	0		nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.8368530273438	2	515.836603	1029.65865	0.10981	5.6642E-05	0.41826	0.00021576	0.52807	0.0002724	515.8366903074565	49.35	0.85171	49.382	49.149	50	0.032043					84	30	4	0	0	0	0.18208	2	11378	11330;11378		26.268	9.1552	1	2296100			16276	7811	9205	9206	20534;20535	20535					0.14500971276129349
ITKVVVSA	8	Unmodified	_ITKVVVSA_					0	0	0			REV__ENSG00000126467|ENST00000246801|TSKS	REV__ENSG00000126467|ENST00000246801|TSKS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2048645019531	2	408.763104	815.511654	0.115	4.7007E-05	-0.38827	-0.00015871	-0.27327	-0.0001117	408.7629982556966	37.791	0.47647	37.791	37.587	38.064	0					24	16	2	0	0	0	0.2646	1	7820	7820		37.974	3.5723	1	122770	+		16277	15312	9206	9207	20536	20536					0.09651874391192905
ITKVVVSA	8	Unmodified	_ITKVVVSA_					0	0	0			REV__ENSG00000126467|ENST00000246801|TSKS	REV__ENSG00000126467|ENST00000246801|TSKS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.2046203613281	2	408.763104	815.511654	0.030467	1.2454E-05	-0.15606	-6.3792E-05	-0.12559	-5.1338E-05	408.7629970690559	37.685	0.48957	37.782	37.604	38.093	0.097527					26	17	2	0	0	0	0.2646	1	7776	7776		46.021	8.047	1	144920	+		16278	15312	9206	9207	20537	20537					0.09651874391192905
ITLFCFPW	8	Unmodified	_ITLFCFPW_					0	0	0			REV__ENSG00000137343|ENST00000330083|ATAT1	REV__ENSG00000137343|ENST00000330083|ATAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.3291625976562	2	513.759507	1025.50446	0.13836	7.1085E-05	1.5866	0.00081513	1.725	0.00088622	514.2618330778275	27.162	0.38973	27.15	26.928	27.318	-0.01156					15	13	2	0	0	0	0.34319	1	4572	4572		5.7604	0	1	70441	+		16279	15857	9207	9208	20538	20538					-0.007271814808973431
ITLMYFHTI	9	Unmodified	_ITLMYFHTI_					0	0	0			REV__nc|ENSG00000109685|O96028-4|NSD2	REV__nc|ENSG00000109685|O96028-4|NSD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.2850952148438	2	569.801903	1137.58925	0.23496	0.00013388	-0.28116	-0.0001602	-0.046199	-2.6324E-05	569.8016825165187	16.614	0.37872	16.552	16.351	16.729	-0.062532					35	12	4	0	0	0	0.31038	1	1419	1419		7.2892	0.18751	1	156010	+		16280	14648	9208	9209	20539	20539					0.025961442650668687
ITLMYPFFYR	10	Unmodified	_ITLMYPFFYR_					0	0	0		ENSG00000104643|ENST00000221086|MTMR9;ENST00000528389.1_1_8:11152715-11157663:+|nuORF;nc|ENSG00000104643|Q96QG7-2|MTMR9;ENST00000530200.1_1_8:11152806-11180294:+|nuORF	ENSG00000104643|ENST00000221086|MTMR9	ENSG00000104643|ENST00000221086|MTMR9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.770263671875	3	450.902015	1349.68422	0.44338	0.00019992	2.0901	0.00094242	2.5334	0.0011423	450.9030675492019	48.172	0.33346	48.216	48.065	48.398	0.043324					13	12	2	0	0	0	0.3179	1	10983	10983		8.9762	1.0308	1	238500			16281	1903	9209	9210	20540	20540					0.023360777362313456
ITLPLALLFLI	11	Unmodified	_ITLPLALLFLI_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.25750732421875	3	409.608937	1225.80498	0.289	0.00011838	-2.5799	-0.0010567	-2.2908	-0.00093835	409.942175226679	84.352	0.14788	84.335	84.263	84.411	-0.016823					8	5	2	0	0	0	0.33202	1	22110	22110		5.0475	0	1	79440			16282	4514	9210	9211	20541	20541					0.2011122872136184
ITLRIQEQQNA	11	Unmodified	_ITLRIQEQQNA_					0	0	0			REV__ENSG00000106125|ENST00000265299|MINDY4	REV__ENSG00000106125|ENST00000265299|MINDY4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2453918457031	3	438.577247	1312.70991	0.39932	0.00017513	1.2013	0.00052688	1.6007	0.00070201	438.57775501741816	50.85	0.46088	50.897	50.604	51.064	0.046577					27	16	2	0	0	0	0.33169	1	11833	11833		6.2344	2.358	1	339860	+		16283	14511	9211	9212	20542	20542					0.06606643512259325
ITLSLGLKY	9	Unmodified	_ITLSLGLKY_					0	0	0			REV__nc|ENSG00000144369|Q6P995-2|FAM171B	REV__nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.75335693359375	2	504.310418	1006.60628	0.32258	0.00016268	0.11191	5.6439E-05	0.4345	0.00021912	504.31030038954964	57.697	0.7179	57.697	57.525	58.243	0					41	25	2	0	0	0	0.24913	1	13888	13888		7.9102	0	1	416660	+		16284	16230	9212	9213	20543	20543					0.10324388142510088
ITLTNLFVLF	10	Unmodified	_ITLTNLFVLF_					0	0	0			REV__nc|ENSG00000151067|Q13936-26|CACNA1C	REV__nc|ENSG00000151067|Q13936-26|CACNA1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.8512573242188	2	590.85245	1179.69035	0.30493	0.00018017	-1.6519	-0.00097603	-1.347	-0.00079586	590.8512971960082	41.948	0.5064	41.948	41.799	42.306	0					35	18	3	0	0	0	0.25219	1	9074	9074		26.268	8.1218	1	943890	+		16285	23030	9213	9214	20544	20544					0.10768919239421848
ITLTNLFVLF	10	Unmodified	_ITLTNLFVLF_					0	0	0			REV__nc|ENSG00000151067|Q13936-26|CACNA1C	REV__nc|ENSG00000151067|Q13936-26|CACNA1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.3069458007812	2	590.85245	1179.69035	0.30493	0.00018017	-1.6519	-0.00097603	-1.347	-0.00079586	590.8512971960082	41.948	0.5064	41.948	41.799	42.306	0					35	18	3	0	0	0	0.31143	1	9058	9058		17.113	3.2068	1	943890	+		16286	23030	9213	9214	20545	20545					0.10768919239421848
ITLVVIRNRR	10	Unmodified	_ITLVVIRNRR_					0	0	0			REV__ENSG00000138075|ENST00000405322|ABCG5	REV__ENSG00000138075|ENST00000405322|ABCG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.8959045410156	3	413.938451	1238.79352	0.00738	3.0549E-06	0.72518	0.00030018	0.73256	0.00030323	413.9387092028933	20.385	0.54215	20.385	20.136	20.678	0					51	19	4	0	0	0	0.31994	1	2582	2582		5.4027	1.2861	1	291690	+		16287	15899	9214	9215	20546	20546					0.1836784447057198
ITMGSVRPS	9	Unmodified	_ITMGSVRPS_					0	0	0		nc|ENSG00000015520|Q9UHC9-2|NPC1L1;ENSG00000015520|ENST00000381160|NPC1L1;nc|ENSG00000015520|Q9UHC9|NPC1L1;nc|ENSG00000015520|Q9UHC9-4|NPC1L1	nc|ENSG00000015520|Q9UHC9-2|NPC1L1	nc|ENSG00000015520|Q9UHC9-2|NPC1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7823791503906	2	474.252577	946.490601	0.26705	0.00012665	-2.5142	-0.0011924	-2.2472	-0.0010657	474.2512588241165	29.357	0.39908	29.369	29.19	29.589	0.012266					27	13	4	0	0	0	0.24471	1	5231	5231		17.113	1.2657	1	116320			16288	482	9215	9216	20547	20547					0.015215410200198676
ITNDGATILK	10	Unmodified	_ITNDGATILK_					0	0	0		ENSG00000120438|ENST00000321394|TCP1;ENST00000544255.5_1_6:160205081-160210586:-|nuORF;ENST00000538128.5_2_6:160206507-160210586:-|nuORF;ENST00000543532.5_1_6:160205081-160210626:-|nuORF;CCT4|p.R240Kfs*3|1|0.18|ENSG00000115484|chr2:61876978-61876979|-/T|frameshift_variant;ENSG00000115484|ENST00000394440|CCT4	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2802734375	2	523.298039	1044.58152	0.77291	0.00040446	-2.175	-0.0011382	-1.4021	-0.00073371	523.29706602863	33.552	0.57944	33.618	33.295	33.875	0.06636					35	20	3	0	0	0	0.1693	1	6536	6536		36.395	2.2926	1	286870			16289	2942	9216	9217	20548	20548					0.06101708269147821
ITNIVSKLK	9	Unmodified	_ITNIVSKLK_					0	0	0		nc|ENSG00000126838|P20742-2|PZP;ENSG00000126838|ENST00000261336|PZP	nc|ENSG00000126838|P20742-2|PZP	nc|ENSG00000126838|P20742-2|PZP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.801025390625	2	508.329142	1014.64373	0.54608	0.00027759	-1.2041	-0.00061208	-0.65803	-0.0003345	508.3285201660052	36.889	0.4767	36.889	36.616	37.093	0					29	16	3	0	0	0	0.20167	1	7503	7503		17.113	2.2746	1	155280			16290	3295	9217	9218	20549	20549					0.13699479408148818
ITNKYQLVF	9	Unmodified	_ITNKYQLVF_					0	0	0		ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;ENST00000563573.5_1_16:22361166-22444153:-|nuORF;ENST00000551766.5_1_16:22437686-22447115:-|nuORF;ENST00000569045.1_1_16:22376319-22447115:-|nuORF;nc|ENSG00000085721|Q9NYV6-4|RRN3	ENST00000427965.6_1_16:29086353-29124388:+|nuORF	ENST00000427965.6_1_16:29086353-29124388:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7822265625	2	563.318774	1124.623	0.3844	0.00021654	-0.029081	-1.6382E-05	0.35532	0.00020016	563.318659761369	55.319	0.51146	55.299	55.025	55.536	-0.019081					35	18	2	0	0	0	0.1558	1	13216	13216		34.932	17.819	1	1509500			16291	1262	9218	9219	20550	20550					0.06566889028476908
ITNNTAEEYV	10	Unmodified	_ITNNTAEEYV_					0	0	0		nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;ENSG00000198959|ENST00000361475|TGM2	nc|ENSG00000198959|P21980-2|TGM2	nc|ENSG00000198959|P21980-2|TGM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.27294921875	2	577.272218	1152.52988	0.25243	0.00014572	0.62146	0.00035875	0.87389	0.00050447	577.2727408515377	21.589	1.136	21.589	21.254	22.39	0					130	40	5	0	0	0	0.34795	1	2878	2878		13.042	1.4022	1	2765200			16292	8174	9219	9220	20551	20551					-0.04028080215448426
ITNQIDQYT	9	Unmodified	_ITNQIDQYT_					0	0	0			REV__ENSG00000181222|ENST00000674977|POLR2A	REV__ENSG00000181222|ENST00000674977|POLR2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3746948242188	2	548.269478	1094.5244	0.50551	0.00027715	0.35893	0.00019679	0.86444	0.00047395	548.2697765371556	32.799	0.6665	32.854	32.645	33.312	0.055309					36	23	2	0	0	0	0.25123	1	6398	6398		12.241	2.8932	1	149050	+		16293	18138	9220	9221	20552	20552					-0.019077590072356543
ITPFLDSVIG	10	Unmodified	_ITPFLDSVIG_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.750244140625	2	531.297507	1060.58046	0.3414	0.00018138	-3.5798	-0.0019019	-3.2384	-0.0017206	531.2953713579626	34.173	0.35729	34.24	33.995	34.352	0.0667					17	12	2	0	0	0	0.31267	1	6645	6645		14.838	4.7643	1	109510	+		16294	14849	9221	9222	20553	20553					0.05259493900234702
ITPKRTIIK	9	Unmodified	_ITPKRTIIK_					0	0	0			REV__chr10:16896411-16898996|348|15.53|0.79|4.29|-|0|TE_info:L1MDb,L1MDb_dup774,L1,LINE,acceptor,-,16895384,16896411|None,CUBN|2	REV__chr10:16896411-16898996|348|15.53|0.79|4.29|-|0|TE_info:L1MDb,L1MDb_dup774,L1,LINE,acceptor,-,16895384,16896411|None,CUBN|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.8110961914062	2	535.358234	1068.70191	0.69279	0.00037089	-0.40646	-0.0002176	0.28633	0.00015329	535.3578214566301	48.342	0.3446	48.385	48.243	48.588	0.04332					16	12	2	0	0	0	0.25622	1	11072	11072		3.9444	0.3479	1	167640	+		16295	13162	9222	9223	20554	20554					0.1703116105340996
ITPLIIICS	9	Unmodified	_ITPLIIICS_					0	0	0			REV__ENSG00000170605|ENST00000641329|OR9K2	REV__ENSG00000170605|ENST00000641329|OR9K2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.79217529296875	2	486.793546	971.57254	0.42237	0.00020561	-0.60146	-0.00029279	-0.17908	-8.7176E-05	486.7918570947932	87.937	1.5582	87.937	87.093	88.651	0					178	77	4	0	0	0	0.088391	1	23251	23251		39.957	0	1	447950	+		16296	17589	9223	9224	20555	20555					0.08561643379118777
ITQALIWLS	9	Unmodified	_ITQALIWLS_					0	0	0		ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2468872070312	2	522.808042	1043.60153	0.6666	0.0003485	-0.63572	-0.00033236	0.030883	1.6146E-05	522.8076355450066	65.66	0.58193	65.66	65.345	65.927	0					52	20	3	0	0	0	0.20881	1	16347	16347		27.629	1.3607	1	1084500			16297	6891	9224	9225	20556	20556					0.08147503999771288
ITQALIWLS	9	Unmodified	_ITQALIWLS_					0	0	0		ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2468872070312	2	522.808042	1043.60153	0.36141	0.00018895	1.541	0.00080564	1.9024	0.00099459	522.809499226107	65.568	0.98273	65.657	65.323	66.305	0.088882					62	35	3	0	0	0	0.18123	1	16295	16295		34.402	5.9072	1	993560			16298	6891	9224	9225	20557	20557					0.08147503999771288
ITQEALPKV	9	Unmodified	_ITQEALPKV_					0	0	0		CON__ENSEMBL:ENSBTAP00000023402	CON__ENSEMBL:ENSBTAP00000023402	CON__ENSEMBL:ENSBTAP00000023402	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2530822753906	2	499.797675	997.580796	0.1626	8.1269E-05	0.55963	0.0002797	0.72223	0.00036097	499.7978179719869	61.286	0.53569	61.276	61.046	61.581	-0.0094566					28	19	2	0	0	0	0.1939	1	14973	14973		24.021	5.8742	1	421340		+	16299	201	9225	9226	20558	20558					0.08190913620080664
ITQEALPKV	9	Unmodified	_ITQEALPKV_					0	0	0		CON__ENSEMBL:ENSBTAP00000023402	CON__ENSEMBL:ENSBTAP00000023402	CON__ENSEMBL:ENSBTAP00000023402	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	499.797675	997.580796	0.10458	5.2268E-05	0.44797	0.00022389	0.55255	0.00027616	499.79785599671277	61.199	0.4255	61.296	61.14	61.566	0.096989	-0.010937	-4.1614E-05	NaN	18.146	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	515110		+	16300	201	9225	9226							0.08190913620080664
ITQGKDAAVSK	11	Unmodified	_ITQGKDAAVSK_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.3140869140625	2	559.31422	1116.61389	-0.039863	-2.2296E-05	-0.15933	-8.9113E-05	-0.19919	-0.00011141	559.3141066650951	13.251	0.33908	13.251	13.118	13.457	0					23	11	3	0	0	0	0.32909	1	387	387		10.899	1.355	1	144920			16301	4306	9226	9227	20559	20559					0.06024495672136254
ITQGKDAAVSK	11	Unmodified	_ITQGKDAAVSK_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.3141479492188	2	559.31422	1116.61389	-0.13752	-7.6918E-05	-0.13736	-7.6829E-05	-0.27489	-0.00015375	559.3140981225605	13.344	0.33401	13.276	13.134	13.468	-0.067496					27	11	4	0	0	0	0.33432	1	406	406		19.144	9.6	1	142860			16302	4306	9226	9227	20560	20560					0.06024495672136254
ITQLIVESF	9	Unmodified	_ITQLIVESF_					0	0	0		nc|ENSG00000157765|O95436-2|SLC34A2;ENSG00000157765|ENST00000382051|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.310546875	2	525.297507	1048.58046	0.29182	0.00015329	0.53092	0.00027889	0.82274	0.00043218	525.2978208144337	73.59	0.82031	73.59	73.307	74.127	0					77	28	4	0	0	0	0.0032746	6	18801	18761;18801;18826;18854;18910;18963		100.09	48.461	1	1769400			16303	5324	9227	9228	20561;20562;20563;20564;20565;20566	20562					0.05811493900228015
ITQLIVESF	9	Unmodified	_ITQLIVESF_					0	0	0		nc|ENSG00000157765|O95436-2|SLC34A2;ENSG00000157765|ENST00000382051|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.310791015625	2	525.297507	1048.58046	0.35973	0.00018896	0.52291	0.00027468	0.88263	0.00046364	525.2977952480225	73.545	0.78313	73.599	73.335	74.119	0.053833					77	27	5	0	0	0	0.011693	4	18830	18736;18785;18830;18883		76.825	33.052	1	1964200			16304	5324	9227	9228	20567;20568;20569;20570	20569					0.05811493900228015
ITQTHFGIS	9	Unmodified	_ITQTHFGIS_					0	0	0			REV__ENSG00000213420|ENST00000292377|GPC2	REV__ENSG00000213420|ENST00000292377|GPC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2474365234375	2	502.263999	1002.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.789	1	25.767	25.267	26.267	-0.022238								0	0	0	0.22065	1	4157	4157		15.847	2.3393	1		+		16305	19038	9228	9229	20571	20571					0.012288834091577883
ITQVASHLS	9	Unmodified	_ITQVASHLS_					0	0	0			REV__ENSG00000236981|ENST00000375024|OR10G9	REV__ENSG00000236981|ENST00000375024|OR10G9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.265625	2	478.263999	954.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.252	1	68.233	67.733	68.733	-0.019157								0	0	0	0.23367	1	17172	17172		11.64	2.2929	1		+		16306	19153	9229	9230	20572	20572					0.03436883409131042
ITQWLFLRYK	10	Unmodified	_ITQWLFLRYK_					0	0	0		ENSG00000164023|ENST00000690982|SGMS2	ENSG00000164023|ENST00000690982|SGMS2	ENSG00000164023|ENST00000690982|SGMS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.1642761230469	3	456.599324	1366.77614	0.082065	3.7471E-05	2.1416	0.00097784	2.2236	0.0010153	456.6005044050699	26.6	0.37568	26.562	26.37	26.746	-0.038671					21	12	2	0	0	0	0.32068	1	4381	4381		1.7423	0.52744	1	66457			16307	5770	9230	9231	20573	20573					0.10742504144900522
ITRARFEEL	9	Unmodified	_ITRARFEEL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8167724609375	2	567.81693	1133.61931	-1.091	-0.00061949	-0.16352	-9.2847E-05	-1.2545	-0.00071234	567.8168374026603	34.694	0.49861	34.694	34.472	34.971	0					39	17	3	0	0	0	0.059067	1	6872	6872		49.527	3.8276	1	401330			16308	2285;8222	9231	9232	20574	20574					0.05784219254610434
ITRARFEEL	9	Unmodified	_ITRARFEEL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.81640625	2	567.81693	1133.61931	-1.0739	-0.0006098	0.03681	2.0901E-05	-1.0371	-0.0005889	567.8167777541335	34.602	0.57631	34.678	34.414	34.99	0.075306					42	20	3	0	0	0	0.086462	1	6838	6838		40.239	13.971	1	456670			16309	2285;8222	9231	9232	20575	20575					0.05784219254610434
ITRARFEEL	9	Unmodified	_ITRARFEEL_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7;ENSG00000126803|ENST00000247207|HSPA2;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.8160400390625	2	567.81693	1133.61931	-0.35843	-0.00020352	-0.53182	-0.00030198	-0.89025	-0.0005055	567.8164845428453	34.537	0.58478	34.615	34.39	34.975	0.077377					44	20	3	0	0	0	0.18208	1	6823	6823		26.268	7.0112	1	292960			16310	2285;8222	9231	9232	20576	20576					0.05784219254610434
ITRDIQFI	8	Unmodified	_ITRDIQFI_					0	0	0			REV__nc|ENSG00000038295|O43897-2|TLL1	REV__nc|ENSG00000038295|O43897-2|TLL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7534484863281	2	503.290017	1004.56548	0.33644	0.00016933	-3.4879	-0.0017554	-3.1514	-0.0015861	503.2877845908423	57.233	0.13242	57.312	57.233	57.365	0.078674					6	4	2	0	0	0	0.3408	1	13799	13799		14.838	3.198	1	38791	+		16311	13514	9232	9233	20577	20577					0.06338046822895649
ITRIPSSKM	9	Unmodified	_ITRIPSSKM_					0	0	0		ENST00000371513.9_1_1:53427298-53442386:+|nuORF	ENST00000371513.9_1_1:53427298-53442386:+|nuORF	ENST00000371513.9_1_1:53427298-53442386:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.77197265625	2	516.797152	1031.57975	0.026531	1.3711E-05	-3.9505	-0.0020416	-3.9239	-0.0020279	516.7955186979316	31.414	0.16844	31.456	31.347	31.515	0.042364					6	5	2	0	0	0	0.2322	1	5840	5840		10.074	1.3285	1	62240			16312	9823	9233	9234	20578	20578					0.06522375979557182
ITRRPSLK	8	Unmodified	_ITRRPSLK_					0	0	0		ENST00000552289.1_1_2:144244940-144276938:+|nuORF;ENSG00000075884|ENST00000295095|ARHGAP15	ENST00000552289.1_1_2:144244940-144276938:+|nuORF	ENST00000552289.1_1_2:144244940-144276938:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2551574707031	2	485.811451	969.608348	0.010694	5.1951E-06	1.2302	0.00059767	1.2409	0.00060286	485.81195117858937	27.585	0.4059	27.585	27.408	27.814	0					24	13	2	0	0	0	0.32435	1	4656	4656		23.148	3.7094	1	208830			16313	1054	9234	9235	20579	20579					0.12232861670986495
ITRRPSLK	8	Unmodified	_ITRRPSLK_					0	0	0		ENST00000552289.1_1_2:144244940-144276938:+|nuORF;ENSG00000075884|ENST00000295095|ARHGAP15	ENST00000552289.1_1_2:144244940-144276938:+|nuORF	ENST00000552289.1_1_2:144244940-144276938:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	485.811451	969.608348	-0.038049	-1.8485E-05	1.384	0.00067237	1.346	0.00065388	485.8120692957962	27.575	0.33815	27.553	27.382	27.72	-0.021412	-0.0095878	8.9186E-05	NaN	23.148	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232080			16314	1054	9234	9235							0.12232861670986495
ITRRPSLK	8	Unmodified	_ITRRPSLK_					0	0	0		ENST00000552289.1_1_2:144244940-144276938:+|nuORF;ENSG00000075884|ENST00000295095|ARHGAP15	ENST00000552289.1_1_2:144244940-144276938:+|nuORF	ENST00000552289.1_1_2:144244940-144276938:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	485.811451	969.608348	-0.011463	-5.569E-06	1.2782	0.00062098	1.2668	0.00061541	485.811967962942	27.562	0.37796	27.55	27.374	27.752	-0.011562	-0.012954	-1.3587E-05	NaN	23.148	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256580			16315	1054	9234	9235							0.12232861670986495
ITRSAFPAF	9	Unmodified	_ITRSAFPAF_					0	0	0		ENST00000562945.2_1_16:34428948-34429212:-|nuORF	ENST00000562945.2_1_16:34428948-34429212:-|nuORF	ENST00000562945.2_1_16:34428948-34429212:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.805419921875	2	505.276909	1008.53927	0.19918	0.00010064	-0.25696	-0.00012984	-0.057782	-2.9196E-05	505.276775407662	65.139	1.1168	65.128	64.413	65.53	-0.011337					91	40	3	0	0	0	0.2322	1	16131	16131		14.838	4.0143	1	289170			16316	11928	9235	9236	20580	20580					0.03533777651421133
ITSDRLLIR	9	Unmodified	_ITSDRLLIR_					0	0	0		ENST00000493927.5_1_10:134000567-134005790:+|nuORF;ENSG00000151640|ENST00000338492|DPYSL4	ENST00000493927.5_1_10:134000567-134005790:+|nuORF	ENST00000493927.5_1_10:134000567-134005790:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7830810546875	2	543.835123	1085.65569	0.73422	0.00039929	-0.27639	-0.00015031	0.45783	0.00024898	543.8348808803571	44.68	0.52892	44.68	44.462	44.991	0					41	18	3	0	0	0	0.21538	1	9970	9970		26.268	5.8536	1	484490			16317	4970	9236	9237	20581	20581					0.11629096151318663
ITSDRLLIR	9	Unmodified	_ITSDRLLIR_					0	0	0		ENST00000493927.5_1_10:134000567-134005790:+|nuORF;ENSG00000151640|ENST00000338492|DPYSL4	ENST00000493927.5_1_10:134000567-134005790:+|nuORF	ENST00000493927.5_1_10:134000567-134005790:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.835123	1085.65569	0.72775	0.00039578	-0.34034	-0.00018509	0.38741	0.00021069	543.8348296124473	44.524	0.57305	44.599	44.389	44.962	0.075047	-0.034177	-3.4401E-05	NaN	26.268	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	460090			16318	4970	9236	9237							0.11629096151318663
ITSFGLTL	8	Unmodified	_ITSFGLTL_					0	0	0		ENST00000521972.1_1_8:59496667-59498469:-|nuORF	ENST00000521972.1_1_8:59496667-59498469:-|nuORF	ENST00000521972.1_1_8:59496667-59498469:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.24700927734375	2	426.247286	850.48002	-0.039081	-1.6658E-05	0.11001	4.6889E-05	0.070924	3.0231E-05	426.24724389152914	70.981	1.0252	70.981	70.406	71.431	0					71	36	3	0	0	0	0.050494	1	18039	18039		77.984	7.2688	1	553020			16319	11496	9237	9238	20582	20582					0.04879881637236849
ITSFGLTL	8	Unmodified	_ITSFGLTL_					0	0	0		ENST00000521972.1_1_8:59496667-59498469:-|nuORF	ENST00000521972.1_1_8:59496667-59498469:-|nuORF	ENST00000521972.1_1_8:59496667-59498469:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.24755859375	2	426.247286	850.48002	-0.078976	-3.3663E-05	0.32554	0.00013876	0.24656	0.0001051	426.2473369401592	70.963	1.1113	71.024	70.351	71.463	0.060783					78	39	3	0	0	0	0.072895	1	17897	17897		67.344	6.9543	1	499770			16320	11496	9237	9238	20583	20583					0.04879881637236849
ITSHPGQIVK	10	Unmodified	_ITSHPGQIVK_					0	0	0		ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000086061|P31689-2|DNAJA1;ENST00000465677.1_1_9:33034269-33037131:+|nuORF	ENSG00000086061|ENST00000330899|DNAJA1	ENSG00000086061|ENST00000330899|DNAJA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7420043945312	2	540.314023	1078.61349	0.38786	0.00020956	-0.44122	-0.0002384	-0.053361	-2.8832E-05	540.3137949364994	59.324	0.51237	59.324	58.996	59.508	0					29	17	2	0	0	0	0.30586	1	14449	14449		9.3831	0	1	164490			16321	1274	9238	9239	20584	20584					0.0773312074295518
ITSKILFV	8	Unmodified	_ITSKILFV_					0	0	0		ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.7943115234375	2	460.794404	919.574254	0.16853	7.7656E-05	0.28786	0.00013265	0.45639	0.0002103	460.7944236902085	56.611	0.69413	56.611	56.37	57.064	0					56	25	3	0	0	0	0.056926	1	13619	13619		74.929	20.155	1	832230			16322	2271	9239	9240	20585	20585					0.11125020459382995
ITSKILFV	8	Unmodified	_ITSKILFV_					0	0	0		ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.794677734375	2	460.794404	919.574254	0.34642	0.00015963	0.31523	0.00014526	0.66165	0.00030488	460.7944515877692	56.494	0.7676	56.573	56.358	57.125	0.078674					58	28	3	0	0	0	0.077335	1	13600	13600		65.235	19.214	1	674430			16323	2271	9239	9240	20586	20586					0.11125020459382995
ITSKILFV	8	Unmodified	_ITSKILFV_					0	0	0		ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.7943115234375	2	460.794404	919.574254	0.80376	0.00037037	-0.29315	-0.00013508	0.51061	0.00023528	460.79422489093287	56.677	0.57041	56.658	56.403	56.973	-0.019077					45	20	3	0	0	0	0.12475	2	13610	13610;13659		56.177	18.203	1	826480			16324	2271	9239	9240	20587;20588	20587					0.11125020459382995
ITSQRPTCI	9	Unmodified	_ITSQRPTCI_					0	0	0		ENST00000295731.6_1_2:219920497-219922208:-|nuORF	ENST00000295731.6_1_2:219920497-219922208:-|nuORF	ENST00000295731.6_1_2:219920497-219922208:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7714538574219	2	509.771134	1017.52771	0.8665	0.00044172	0.090795	4.6285E-05	0.9573	0.000488	509.7710965564077	55.884	1.5772	55.884	55.539	57.116	0					125	57	5	0	0	0	0.17277	1	13479	13479		27.629	3.6082	1	11472000			16325	9174	9240	9241	20589	20589					0.019652125657671604
ITSQVFGKL	9	Unmodified	_ITSQVFGKL_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7724914550781	2	496.792392	991.570232	0.16126	8.0113E-05	0.81339	0.00040409	0.97465	0.0004842	496.7927907628124	15.822	0.42806	15.757	15.545	15.973	-0.064414					25	14	2	0	0	0	0.25779	1	1141	1141		6.2058	0	1	71430			16326	342	9241	9242	20590	20590					0.07410930965670559
ITSRLPPSSGP	11	Unmodified	_ITSRLPPSSGP_					0	0	0			REV__ENST00000451318.2_1_9:135645025-135645512:-|nuORF	REV__ENST00000451318.2_1_9:135645025-135645512:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.8211059570312	2	556.308938	1110.60332	0.36064	0.00020063	-0.43266	-0.00024069	-0.072016	-4.0063E-05	556.3087858165076	62.678	0.27658	62.678	62.58	62.856	0					16	9	3	0	0	0	0.28004	1	15466	15466		24.991	2.2547	1	758100	+		16327	21116	9242	9243	20591	20591					0.0524451301771478
ITSSSCSLN	9	Unmodified	_ITSSSCSLN_					0	0	0		nc|ENSG00000100722|Q6PJT7-8|ZC3H14;nc|ENSG00000100722|Q6PJT7-6|ZC3H14	nc|ENSG00000100722|Q6PJT7-8|ZC3H14	nc|ENSG00000100722|Q6PJT7-8|ZC3H14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2690734863281	2	456.210575	910.406597	0.2451	0.00011182	2.0751	0.0009467	2.3202	0.0010585	456.21140062767716	40.31	0.42318	40.31	40.078	40.501	0					23	14	2	0	0	0	0.25526	1	8515	8515		7.9102	2.1497	1	184930			16328	12619	9243	9244	20592	20592					-0.052190348675367204
ITSYIVEKR	9	Unmodified	_ITSYIVEKR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2578735351562	2	554.821681	1107.62881	0.5982	0.0003319	0.034341	1.9053E-05	0.63255	0.00035095	555.3222687584661	45.401	0.36485	45.461	45.282	45.647	0.059837					21	12	2	0	0	0	0.22596	1	10104	10104		21.747	2.3076	1	97698			16329	5186	9244	9245	20593	20593					0.07929987540137517
ITTGSAWF	8	Unmodified	_ITTGSAWF_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7212219238281	2	441.721436	881.428318	0.33761	0.00014913	-0.49156	-0.00021713	-0.15396	-6.8007E-05	441.7211562487365	91.15	0.62205	91.151	90.859	91.481	0.00047302					76	41	2	0	0	0	0.45942	1	24194	24194		2.5775	0	1	1178700			16330	5606	9245	9246	20594	20594					-0.017138620566697682
ITTKHLDRRV	10	Unmodified	_ITTKHLDRRV_					0	0	0			REV__ENSG00000179698|ENST00000323662|WDR97	REV__ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8693237304688	2	619.870028	1237.7255	-0.018719	-1.1603E-05	0.060523	3.7516E-05	0.041804	2.5913E-05	619.8691569591535	96.085	0.7596	96.163	95.962	96.722	0.077415					109	72	2	0	0	0	0.41168	1	25712	25712		1.3295	0.13619	1	188500	+		16331	18088	9246	9247	20595	20595					0.11614974819917734
ITTLFLFSK	9	Unmodified	_ITTLFLFSK_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.320068359375	2	535.318243	1068.62193	0.34952	0.0001871	1.6245	0.0008696	1.974	0.0010567	535.3190361629571	68.61	0.83513	68.682	68.51	69.346	0.071938					55	30	3	0	0	0	0.016571	1	17299	17299		69.338	19.405	1	464480			16332	5810	9247	9248	20596	20596					0.09036674659569144
ITTLFLFSK	9	Unmodified	_ITTLFLFSK_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	535.318243	1068.62193	0.57512	0.00030787	1.3719	0.00073442	1.9471	0.0010423	535.3188036059863	68.669	0.71664	68.669	68.541	69.257	0	-0.018179	-8.4334E-05	NaN	69.338	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438110			16333	5810	9247	9248							0.09036674659569144
ITTLFLFSK	9	Unmodified	_ITTLFLFSK_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	535.318243	1068.62193	0.51325	0.00027475	1.468	0.00078583	1.9812	0.0010606	535.3189482767236	68.729	0.51269	68.71	68.516	69.029	-0.019157	0.023426	1.8475E-05	NaN	69.338	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	439600			16334	5810	9247	9248							0.09036674659569144
ITTQEITQL	9	Unmodified	_ITTQEITQL_					0	0	0		nc|ENSG00000124222|O14662-6|STX16;nc|ENSG00000124222|O14662-2|STX16;nc|ENSG00000124222|O14662-4|STX16;nc|ENSG00000124222|O14662-5|STX16;ENSG00000124222|ENST00000371141|STX16	nc|ENSG00000124222|O14662-6|STX16	nc|ENSG00000124222|O14662-6|STX16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3134765625	2	523.790047	1045.56554	0.15363	8.0467E-05	1.2861	0.00067365	1.4397	0.00075411	523.7903563645276	27.549	0.60362	27.528	27.291	27.895	-0.021412					24	20	2	0	0	0	0.24993	1	4699	4699		13.042	1.4022	1	187520			16335	3146	9248	9249	20597	20597					0.04458002032242803
ITTRAHHF	8	Unmodified	_ITTRAHHF_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.2463684082031	2	491.764501	981.514448	0.41581	0.00020448	-1.7955	-0.00088298	-1.3797	-0.00067849	491.7635478985406	38.057	0.33524	38.148	37.959	38.294	0.090881					15	11	2	0	0	0	0.33995	1	7869	7869		15.768	4.9443	1	104010	+		16336	15947	9249	9250	20598	20598					0.02295142568709707
ITTVPYSLI	9	Unmodified	_ITTVPYSLI_					0	0	0		nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1;ENSG00000183655|ENST00000337975|KLHL25	nc|ENSG00000171617|O14682-2|ENC1;ENSG00000183655|ENST00000337975|KLHL25	ENSG00000183655|ENST00000337975|KLHL25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.7946472167969	2	503.794601	1005.57465	0.39939	0.00020121	-0.23443	-0.00011811	0.16496	8.3106E-05	503.7943430502296	82.235	0.52023	82.235	81.968	82.489	0					27	18	2	0	0	0	0.21303	1	21477	21477		21.747	1.293	1	215330			16337	6564;7386	9250	9251	20599	20599					0.07208395388579447
ITTYSLVAK	9	Unmodified	_ITTYSLVAK_					0	0	0		ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7294006347656	2	498.292225	994.569897	0.37897	0.00018884	-4.4745	-0.0022296	-4.0955	-0.0020408	498.2908027689416	72.956	0.27772	73.01	72.814	73.091	0.053841					11	9	2	0	0	0	0.25066	1	18608	18608		11.64	3.7301	1	32926			16338	2756	9251	9252	20600	20600					0.07239511245802532
ITVAEKHNIS	10	Unmodified	_ITVAEKHNIS_					0	0	0			REV__ENSG00000167914|ENST00000301659|GSDMA	REV__ENSG00000167914|ENST00000301659|GSDMA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.8212280273438	2	556.308938	1110.60332	0.23942	0.00013319	-0.77498	-0.00043113	-0.53556	-0.00029794	556.3082820512053	62.689	0.34512	62.68	62.542	62.887	-0.0085526					30	12	3	0	0	0	0.255	1	15492	15492		27.629	0	1	849420	+		16339	17421	9252	9253	20601	20601					0.0524451301771478
ITVFVFCF	8	Unmodified	_ITVFVFCF_					0	0	0		ENST00000580151.5_1_17:73282751-73284642:-|nuORF	ENST00000580151.5_1_17:73282751-73284642:-|nuORF	ENST00000580151.5_1_17:73282751-73284642:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.8160705566406	2	488.254057	974.493561	0.1323	6.4595E-05	-0.76361	-0.00037284	-0.63131	-0.00030824	488.25145032635874	28.555	0.24342	28.551	28.385	28.629	-0.0042572					10	8	2	0	0	0	0.34247	1	4960	4960		8.5933	0	1	51998			16340	12073	9253	9254	20602	20602					0.005294161448318846
ITVGDIGPK	9	Unmodified	_ITVGDIGPK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2633361816406	2	450.263468	898.512382	-0.17418	-7.8426E-05	0.25004	0.00011258	0.075861	3.4158E-05	450.2634343880216	39.031	0.98221	39.031	38.741	39.723	0					101	35	4	0	0	0	0.0010968	3	8195	8195;8242;8291		121.53	56.299	1	4395100			16341	5516	9254	9255	20603;20604;20605	20603					0.05906669040234647
ITVGDIGPK	9	Unmodified	_ITVGDIGPK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2633056640625	2	450.263468	898.512382	0.055643	2.5054E-05	-0.034079	-1.5344E-05	0.021564	9.7094E-06	450.2633116828613	38.966	0.93076	39.058	38.76	39.69	0.09267					89	33	4	0	0	0	0.001957	2	8177	8177;8225		110.55	54.376	1	4952400			16342	5516	9254	9255	20606;20607	20606					0.05906669040234647
ITVGDIGPK	9	Unmodified	_ITVGDIGPK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.263427734375	2	450.263468	898.512382	0.37533	0.000169	-0.39876	-0.00017955	-0.023434	-1.0551E-05	450.2631696852189	38.94	0.82958	39.039	38.735	39.565	0.099403					85	29	4	0	0	0	0.0016712	3	8157	8157;8202;8257		114.2	55.523	1	5063600			16343	5516	9254	9255	20608;20609;20610	20608					0.05906669040234647
ITVGLIVNQ	9	Unmodified	_ITVGLIVNQ_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7857360839844	2	478.792392	955.570232	0.34634	0.00016583	2.6626	0.0012748	3.009	0.0014407	478.7944292616831	82.296	0.91382	82.275	82.061	82.975	-0.020584					89	35	4	0	0	0	0.13748	3	21417	21417;21468;21516		32.786	4.2988	1	825250			16344	2965	9255	9256	20611;20612;20613	20611					0.09066930965661868
ITVGPAFRPR	10	Unmodified	_ITVGPAFRPR_					0	0	0			REV__ENSG00000134780|ENST00000257215|DAGLA	REV__ENSG00000134780|ENST00000257215|DAGLA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3463134765625	2	557.330008	1112.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.471	1	98.533	98.033	99.033	0.061516								0	0	0	0.37739	1	26357	26357		3.2813	0.39209	1		+		16345	15702	9256	9257	20614	20614					0.09364533216739801
ITVGVDGTLYK	11	Unmodified	_ITVGVDGTLYK_					0	0	0		ENSG00000156510|ENST00000354624|HKDC1	ENSG00000156510|ENST00000354624|HKDC1	ENSG00000156510|ENST00000354624|HKDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3268432617188	2	583.326796	1164.63904	0.42585	0.00024841	-1.178	-0.00068713	-0.7521	-0.00043872	583.3265539856112	49.049	0.79864	49.049	48.827	49.626	0					108	28	5	0	0	0	1.3231E-08	1	11280	11280		139.38	83.875	1	1464300			16346	5240	9257	9258	20615	20615					0.06330550474694974
ITVGVDGTLYK	11	Unmodified	_ITVGVDGTLYK_					0	0	0		ENSG00000156510|ENST00000354624|HKDC1	ENSG00000156510|ENST00000354624|HKDC1	ENSG00000156510|ENST00000354624|HKDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.32666015625	2	583.326796	1164.63904	0.25248	0.00014728	-1.0822	-0.00063129	-0.82974	-0.00048401	583.3265782241743	49.127	0.84124	49.172	48.935	49.776	0.044891					99	30	5	0	0	0	1.6471E-05	1	11285	11285		118.21	62.707	1	1845800			16347	5240	9257	9258	20616	20616					0.06330550474694974
ITVGVDGTLYK	11	Unmodified	_ITVGVDGTLYK_					0	0	0		ENSG00000156510|ENST00000354624|HKDC1	ENSG00000156510|ENST00000354624|HKDC1	ENSG00000156510|ENST00000354624|HKDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3268432617188	2	583.326796	1164.63904	0.16764	9.7789E-05	-1.1097	-0.00064729	-0.94202	-0.0005495	583.3266404973747	49.067	0.72208	49.099	48.852	49.574	0.032043					106	25	6	0	0	0	1.9818E-05	2	11252	11252;11302		115.06	59.556	1	1718200			16348	5240	9257	9258	20617;20618	20617					0.06330550474694974
ITVHAITA	8	Unmodified	_ITVHAITA_					0	0	0		ENST00000424043.3_1_1:92580813-92580855:-|nuORF	ENST00000424043.3_1_1:92580813-92580855:-|nuORF	ENST00000424043.3_1_1:92580813-92580855:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.5665588378906	2	413.245078	824.475603	0.073739	3.0472E-05	-0.46191	-0.00019088	-0.38817	-0.00016041	413.2448099487011	27.299	0.87894	27.278	26.897	27.776	-0.02141					66	30	3	0	0	0	0.3366	1	4550	4550		18.135	0	1	522960			16349	10392	9258	9259	20619	20619					0.05634417214309906
ITVHSVLDFL	10	Unmodified	_ITVHSVLDFL_					0	0	0		ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1;ENST00000479501.5_1_20:61926459-61943880:+|nuORF	ENSG00000101203|ENST00000358894|COL20A1	ENSG00000101203|ENST00000358894|COL20A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7957153320312	2	572.324057	1142.63356	0.47322	0.00027084	-1.0331	-0.00059128	-0.55989	-0.00032044	572.3232642916847	53.832	0.51089	53.832	53.595	54.105	0					28	18	2	0	0	0	0.30586	1	12765	12765		19.257	5.3509	1	190610			16350	1675	9259	9260	20620	20620					0.06794871682882331
ITVHSVLDFL	10	Unmodified	_ITVHSVLDFL_					0	0	0		ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1;ENST00000479501.5_1_20:61926459-61943880:+|nuORF	ENSG00000101203|ENST00000358894|COL20A1	ENSG00000101203|ENST00000358894|COL20A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	572.324057	1142.63356	0.31701	0.00018143	-0.96832	-0.00055419	-0.65131	-0.00037276	572.3237650679724	53.779	0.54721	53.835	53.638	54.185	0.056259	-0.024498	-0.00044073	NaN	19.257	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214960			16351	1675	9259	9260							0.06794871682882331
ITVNSQLLFKF	11	Unmodified	_ITVNSQLLFKF_					0	0	0			REV__ENST00000216455.8_1_14:58738631-58738670:+|nuORF	REV__ENST00000216455.8_1_14:58738631-58738670:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.8943176269531	3	437.255334	1308.74417	-0.13273	-5.8039E-05	-1.6907	-0.00073928	-1.8235	-0.00079732	437.255595959164	52.372	0.4072	52.371	52.141	52.548	-0.00080872					36	14	4	0	0	0	0.32824	1	12281	12281		6.2344	1.1868	1	235050	+		16352	19413	9260	9261	20621	20621					0.10215091671102527
ITVRYEKC	8	Unmodified	_ITVRYEKC_					0	0	0			REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF	REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.82177734375	2	506.268227	1010.5219	0.54694	0.0002769	-4.4628	-0.0022594	-3.9159	-0.0019825	506.26654278937065	36.117	0.23568	36.203	36.009	36.244	0.086246					11	8	2	0	0	0	0.33245	1	7296	7296		19.439	2.4967	1	105120	+		16353	14176	9261	9262	20622	20622					0.01706114054104546
ITVSTTMIF	9	Unmodified	_ITVSTTMIF_					0	0	0		ENST00000308769.12_2_1:175958519-175996767:-|nuORF	ENST00000308769.12_2_1:175958519-175996767:-|nuORF	ENST00000308769.12_2_1:175958519-175996767:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7731018066406	2	506.772811	1011.53107	0.3895	0.00019739	0.20175	0.00010224	0.59125	0.00029963	506.7728990286422	82.127	0.83688	82.127	81.919	82.756	0					69	30	3	0	0	0	0.24581	1	21474	21474		16.942	1.0951	1	1866700			16354	9298	9262	9263	20623	20623					0.02576462619765607
ITVSTTMIF	9	Unmodified	_ITVSTTMIF_					0	0	0		ENST00000308769.12_2_1:175958519-175996767:-|nuORF	ENST00000308769.12_2_1:175958519-175996767:-|nuORF	ENST00000308769.12_2_1:175958519-175996767:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.77301025390625	2	506.772811	1011.53107	0.19992	0.00010131	0.24484	0.00012408	0.44476	0.00022539	506.77296164800947	82.05	1.8896	82.119	80.95	82.84	0.068993					159	85	4	0	0	0	0.24581	1	21377	21377		16.942	1.0951	1	2081700			16355	9298	9262	9263	20624	20624					0.02576462619765607
ITVTANRLF	9	Unmodified	_ITVTANRLF_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8037719726562	2	517.803291	1033.59203	0.37835	0.00019591	-0.34362	-0.00017793	0.034733	1.7985E-05	517.8033306168868	58.964	0.67716	58.964	58.564	59.241	0					55	23	4	0	0	0	0.1854	1	14308	14308		32.305	2.0807	1	1244700			16356	8091	9263	9264	20625	20625					0.07657735714224145
ITVTKELLKKI	11	Unmodified	_ITVTKELLKKI_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92;nc|ENSG00000114656|Q9ULG3-2|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.2731018066406	3	429.286634	1284.83807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.149	1	97.219	96.719	97.719	0.070465								0	0	0	0.3819	1	25991	25991		0.45452	0.29519	1				16357	2578	9264	9265	20626	20626					0.20704810773395366
ITWAALLSK	9	Unmodified	_ITWAALLSK_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2582702636719	2	501.80276	1001.59097	0.32509	0.00016313	-0.48697	-0.00024436	-0.16188	-8.1231E-05	501.80490525954673	81.159	0.39834	81.159	80.904	81.302	0					24	18	2	0	0	0	0.25202	1	21074	21074		6.7232	0	1	57236	+		16358	18751	9265	9266	20627	20627					0.09023521345318386
ITWNRKKLGEF	11	Unmodified	_ITWNRKKLGEF_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF;ENST00000590977.5_1_17:42931463-42936567:-|nuORF;ENST00000586276.5_1_17:42931463-42937758:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.27593994140625	3	464.597983	1390.77212	0.25608	0.00011897	-0.1937	-8.9994E-05	0.062375	2.8979E-05	464.59789787920596	49.967	0.38862	50.012	49.825	50.213	0.044891					26	14	2	0	0	0	0.33287	1	11514	11514		2.8433	1.6285	1	213210			16359	2224	9266	9267	20628	20628					0.09236414651195446
ITWSRPGGL	9	Unmodified	_ITWSRPGGL_					0	0	0			REV__ENST00000394518.6_1_15:86287920-86288064:+|nuORF	REV__ENST00000394518.6_1_15:86287920-86288064:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7724914550781	2	493.774534	985.534515	0.10626	5.2467E-05	-2.9765	-0.0014697	-2.8702	-0.0014172	493.77278187716365	14.566	0.60927	14.461	14.273	14.882	-0.10466					35	20	2	0	0	0	0.28674	1	749	749		10.824	1.4408	1	340660	+		16360	20621	9267	9268	20629	20629					0.041168935086716374
ITYDNGFLFI	10	Unmodified	_ITYDNGFLFI_					0	0	0		ENSG00000106804|ENST00000223642|C5	ENSG00000106804|ENST00000223642|C5	ENSG00000106804|ENST00000223642|C5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8081665039062	2	601.808239	1201.60193	0.61854	0.00037224	-0.52405	-0.00031538	0.094496	5.6868E-05	601.8080491298982	74.485	1.4116	74.485	73.632	75.043	0					93	48	3	0	0	0	0.2811	2	18925	18925;19104		22.736	5.6234	1	772990			16361	2103	9268	9269	20630;20631	20630					0.009188789289510169
ITYDNGFLFI	10	Unmodified	_ITYDNGFLFI_					0	0	0		ENSG00000106804|ENST00000223642|C5	ENSG00000106804|ENST00000223642|C5	ENSG00000106804|ENST00000223642|C5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.8084106445312	2	601.808239	1201.60193	0.4712	0.00028357	-0.35532	-0.00021383	0.11589	6.9741E-05	601.8081501541831	74.314	1.6664	74.367	73.578	75.244	0.052361					113	58	3	0	0	0	0.30872	1	19074	19074		19.362	1.227	1	909440			16362	2103	9268	9269	20632	20632					0.009188789289510169
ITYDNGFLFI	10	Unmodified	_ITYDNGFLFI_					0	0	0		ENSG00000106804|ENST00000223642|C5	ENSG00000106804|ENST00000223642|C5	ENSG00000106804|ENST00000223642|C5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.8086547851562	2	601.808239	1201.60193	0.48202	0.00029008	-0.36562	-0.00022003	0.1164	7.0052E-05	601.8081647331855	74.292	1.7331	74.261	73.61	75.343	-0.030655					119	62	3	0	0	0	0.26265	1	19109	19109		24.991	3.454	1	839680			16363	2103	9268	9269	20633	20633					0.009188789289510169
ITYDTPFKR	9	Unmodified	_ITYDTPFKR_					0	0	0		ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000366583.6_1_1:236689310-236706138:+|nuORF;ENST00000532826.5_1_1:236689310-236702461:+|nuORF	ENSG00000116977|ENST00000366584|LGALS8	ENSG00000116977|ENST00000366584|LGALS8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.234619140625	2	570.806031	1139.59751	0.64043	0.00036556	-1.6725	-0.00095466	-1.032	-0.00058909	570.8047038018326	36.292	0.3543	36.378	36.272	36.626	0.08625					17	11	2	0	0	0	0.23749	1	7327	7327		15.248	0.66679	1	276340			16364	2765	9269	9270	20634	20634					0.0332941450603812
ITYEREGF	8	Unmodified	_ITYEREGF_					0	0	0			REV__ENST00000468573.5_1_1:239550009-239550420:+|nuORF	REV__ENST00000468573.5_1_1:239550009-239550420:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.30224609375	2	507.748182	1013.48181	0.3121	0.00015847	0.15406	7.8222E-05	0.46616	0.00023669	507.74802305269174	43.653	0.55935	43.73	43.515	44.074	0.077515					22	20	2	0	0	0	0.34185	1	9702	9702		2.5775	0	1	183160	+		16365	21331	9270	9271	20635	20635					-0.02439109344800272
ITYFLPKRR	9	Unmodified	_ITYFLPKRR_					0	0	0			REV__ENSG00000160716|ENST00000368476|CHRNB2	REV__ENSG00000160716|ENST00000368476|CHRNB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.3594360351562	2	597.361308	1192.70806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.881	1	90.972	90.472	91.472	0.090668								0	0	0	0.25631	1	24098	24098		4.3292	0.73274	1		+		16366	16914	9271	9272	20636	20636					0.11941679284927886
ITYIKDVTF	9	Unmodified	_ITYIKDVTF_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2946166992188	2	550.305332	1098.59611	0.27751	0.00015271	0.078229	4.305E-05	0.35574	0.00019576	550.305276031685	61.784	0.65244	61.784	61.51	62.162	0					41	23	2	0	0	0	0.17787	1	15184	15184		26.884	7.6267	1	525020			16367	1402	9272	9273	20637	20637					0.05075780417269016
ITYIKDVTF	9	Unmodified	_ITYIKDVTF_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2942504882812	2	550.305332	1098.59611	0.03691	2.0312E-05	-0.03396	-1.8689E-05	0.0029497	1.6232E-06	550.3050786360494	61.689	0.69315	61.786	61.507	62.2	0.096985					41	24	2	0	0	0	0.17787	2	15113	15113;15192		26.884	8.7487	1	421310			16368	1402	9272	9273	20638;20639	20638					0.05075780417269016
ITYIKDVTF	9	Unmodified	_ITYIKDVTF_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2947387695312	2	550.305332	1098.59611	0.081808	4.502E-05	0.029337	1.6145E-05	0.11115	6.1164E-05	550.3053075155439	61.73	0.54103	61.721	61.553	62.094	-0.0085526					32	18	2	0	0	0	0.17787	1	15203	15203		26.884	7.6267	1	528670			16369	1402	9272	9273	20640	20640					0.05075780417269016
ITYITELSI	9	Unmodified	_ITYITELSI_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7792358398438	2	526.79734	1051.58013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.196	1	85.196	84.696	85.696	0								0	0	0	0.20238	1	22368	22368		21.747	0	1				16370	1775	9273	9274	20641	20641					0.05640074180382726
ITYNVNDTFHK	11	Unmodified	_ITYNVNDTFHK_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-2|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.2261962890625	3	451.226215	1350.65681	0.49382	0.00022282	-0.53621	-0.00024195	-0.042397	-1.9131E-05	451.22597779008856	37.644	0.92719	37.644	37.342	38.269	0					85	32	4	0	0	0	0.061759	1	7809	7809		49.842	35.672	1	2146100			16371	2642	9274	9275	20642	20642					-0.004487342704578623
ITYNVNDTFHK	11	Unmodified	_ITYNVNDTFHK_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-2|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2261962890625	3	451.226215	1350.65681	0.21837	9.8534E-05	-0.30205	-0.0001363	-0.083685	-3.7761E-05	451.2260672204665	37.473	0.84221	37.566	37.275	38.118	0.093018					94	30	5	0	0	0	0.32345	1	7744	7744		20.12	13.886	1	2624400			16372	2642	9274	9275	20643	20643					-0.004487342704578623
ITYPYTPQFK	10	Unmodified	_ITYPYTPQFK_					0	0	0		NFAM1|p.N107Efs*131|1|0.49|ENSG00000235568|chr22:42411539-42411540|-/C|frameshift_variant;ENSG00000235568|ENST00000329021|NFAM1	NFAM1|p.N107Efs*131|1|0.49|ENSG00000235568|chr22:42411539-42411540|-/C|frameshift_variant	NFAM1|p.N107Efs*131|1|0.49|ENSG00000235568|chr22:42411539-42411540|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.8312377929688	2	629.329339	1256.64412	0.42722	0.00026886	-0.12979	-8.168E-05	0.29743	0.00018718	629.3291542151642	52.778	0.60353	52.778	52.408	53.012	0					62	21	4	0	0	0	0.025736	1	12380	12380		65.474	32.688	1	1299100			16373	8494	9275	9276	20644	20644					0.02606854337295772
ITYPYTPQFK	10	Unmodified	_ITYPYTPQFK_					0	0	0		NFAM1|p.N107Efs*131|1|0.49|ENSG00000235568|chr22:42411539-42411540|-/C|frameshift_variant;ENSG00000235568|ENST00000329021|NFAM1	NFAM1|p.N107Efs*131|1|0.49|ENSG00000235568|chr22:42411539-42411540|-/C|frameshift_variant	NFAM1|p.N107Efs*131|1|0.49|ENSG00000235568|chr22:42411539-42411540|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.3294677734375	2	629.329339	1256.64412	0.36322	0.00022858	0.0091106	5.7336E-06	0.37233	0.00023432	629.3293099682506	52.706	0.63208	52.757	52.441	53.073	0.050575					60	22	4	0	0	0	0.0082636	2	12372	12372;12420		84.522	51.737	1	1311900			16374	8494	9275	9276	20645;20646	20645					0.02606854337295772
ITYPYTPQFK	10	Unmodified	_ITYPYTPQFK_					0	0	0		NFAM1|p.N107Efs*131|1|0.49|ENSG00000235568|chr22:42411539-42411540|-/C|frameshift_variant;ENSG00000235568|ENST00000329021|NFAM1	NFAM1|p.N107Efs*131|1|0.49|ENSG00000235568|chr22:42411539-42411540|-/C|frameshift_variant	NFAM1|p.N107Efs*131|1|0.49|ENSG00000235568|chr22:42411539-42411540|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.3295288085938	2	629.329339	1256.64412	0.28875	0.00018172	0.12724	8.0075E-05	0.41599	0.00026179	629.3292455635578	52.88	0.6487	52.872	52.571	53.219	-0.007946					65	23	4	0	0	0	0.0046086	2	12452	12405;12452		93.938	61.152	1	1326200			16375	8494	9275	9276	20647;20648	20648					0.02606854337295772
ITYSVFYIHK	10	Unmodified	_ITYSVFYIHK_					0	0	0		ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP;GSAP|p.N794Kfs*6|1|0.07|ENSG00000186088|chr7:77311932-77311933|-/GTAGACCC|frameshift_variant;ENSG00000186088|ENST00000257626|GSAP	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.23284912109375	3	424.23253	1269.67576	0.086597	3.6737E-05	-0.2018	-8.5608E-05	-0.1152	-4.8871E-05	424.23235015735844	51.293	0.43887	51.303	51.094	51.533	0.0095634					32	16	3	0	0	0	0.34896	1	11974	11974		12.856	4.4116	1	295020			16376	7586	9276	9277	20649	20649					0.051708470912672055
ITYSVFYIHK	10	Unmodified	_ITYSVFYIHK_					0	0	0		ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP;GSAP|p.N794Kfs*6|1|0.07|ENSG00000186088|chr7:77311932-77311933|-/GTAGACCC|frameshift_variant;ENSG00000186088|ENST00000257626|GSAP	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	424.23253	1269.67576	0.14327	6.078E-05	-0.22136	-9.391E-05	-0.078094	-3.313E-05	424.56665298505726	51.173	0.4817	51.173	50.949	51.43	0	-0.064848	-1.3934E-05	NaN	12.856	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295790			16377	7586	9276	9277							0.051708470912672055
ITYVCVNLF	9	Unmodified	_ITYVCVNLF_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2901611328125	2	536.280803	1070.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.221	1	59.312	58.812	59.812	0.091301								0	0	0	0.16757	1	14401	14401		30.637	1.555	1				16378	4586	9277	9278	20650	20650					0.014601688566699522
IVAGSLITK	9	Unmodified	_IVAGSLITK_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.2894592285156	2	451.289485	900.564418	0.53544	0.00024164	-0.4828	-0.00021788	0.05264	2.3756E-05	451.28915598749796	37.557	0.86434	37.557	37.285	38.149	0					69	30	4	0	0	0	0.048637	1	7736	7736		53.404	7.7044	1	1304800			16379	7873	9278	9279	20651	20651					0.11015832453983876
IVAGVNYF	8	Unmodified	_IVAGVNYF_					0	0	0		CST3|p.T97Mfs*19|1|0.06|ENSG00000101439|chr20:23635321-23635322|-/AGATGCA|frameshift_variant;ENSG00000101439|ENST00000376925|CST3	CST3|p.T97Mfs*19|1|0.06|ENSG00000101439|chr20:23635321-23635322|-/AGATGCA|frameshift_variant	CST3|p.T97Mfs*19|1|0.06|ENSG00000101439|chr20:23635321-23635322|-/AGATGCA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.787841796875	2	441.739628	881.464704	0.18059	7.9776E-05	0.41194	0.00018197	0.59253	0.00026174	441.7397697287144	37.652	0.26722	37.741	37.58	37.847	0.088978					10	9	2	0	0	0	0.33618	1	7801	7801		17.087	2.5049	1	55761			16380	245	9279	9280	20652	20652					0.019230148400424696
IVAGVNYF	8	Unmodified	_IVAGVNYF_					0	0	0		CST3|p.T97Mfs*19|1|0.06|ENSG00000101439|chr20:23635321-23635322|-/AGATGCA|frameshift_variant;ENSG00000101439|ENST00000376925|CST3	CST3|p.T97Mfs*19|1|0.06|ENSG00000101439|chr20:23635321-23635322|-/AGATGCA|frameshift_variant	CST3|p.T97Mfs*19|1|0.06|ENSG00000101439|chr20:23635321-23635322|-/AGATGCA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	441.739628	881.464704	0.39328	0.00017373	-0.15845	-6.9992E-05	0.23483	0.00010374	441.7391626165253	37.782	0.28015	37.782	37.646	37.926	0	0.032329	-0.00035745	NaN	17.087	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79732			16381	245	9279	9280							0.019230148400424696
IVAGVNYF	8	Unmodified	_IVAGVNYF_					0	0	0		CST3|p.T97Mfs*19|1|0.06|ENSG00000101439|chr20:23635321-23635322|-/AGATGCA|frameshift_variant;ENSG00000101439|ENST00000376925|CST3	CST3|p.T97Mfs*19|1|0.06|ENSG00000101439|chr20:23635321-23635322|-/AGATGCA|frameshift_variant	CST3|p.T97Mfs*19|1|0.06|ENSG00000101439|chr20:23635321-23635322|-/AGATGCA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	441.739628	881.464704	0.17804	7.865E-05	1.8947	0.00083695	2.0727	0.0009156	441.7391102984562	37.629	0.08535	37.727	37.682	37.768	0.097527	-0.023232	0.0014564	NaN	17.087	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53011			16382	245	9279	9280							0.019230148400424696
IVAKRLESL	9	Unmodified	_IVAKRLESL_					0	0	0		nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;SBNO1|p.N1108Efs*3|1|0.22|ENSG00000139697|chr12:123309827-123309830|TATT/-|frameshift_variant;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000064932|Q9Y2G9-3|SBNO2;SBNO1|p.N1108Efs*3|1|0.22|ENSG00000139697|chr12:123309827-123309830|TATT/-|frameshift_variant	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8270874023438	2	514.826766	1027.63898	0.46902	0.00024146	-0.075017	-3.8621E-05	0.394	0.00020284	514.8268101266651	32.727	0.5695	32.727	32.415	32.985	0					31	19	3	0	0	0	0.25714	1	6243	6243		15.248	0	1	222220			16383	798;4259	9280	9281	20653	20653					0.12626595265373908
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.32086181640625	2	479.320786	956.627018	0.34628	0.00016598	-0.059323	-2.8435E-05	0.28696	0.00013755	479.3206746519181	53.511	1.6915	53.511	53.173	54.864	0					165	62	4	0	0	0	0.00012108	3	12636	12583;12636;12686		137.42	55.534	1	5469200			16384	7564	9281	9282	20654;20655;20656	20655					0.14696978522181325
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.3209533691406	2	479.320786	956.627018	0.21329	0.00010223	0.11684	5.6002E-05	0.33012	0.00015824	479.32075138885904	53.441	1.5208	53.497	53.167	54.688	0.056255					155	57	4	0	0	0	0.0013683	3	12628	12577;12628;12676		118.07	40.847	1	6202900			16385	7564	9281	9282	20657;20658;20659	20658					0.14696978522181325
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.3207092285156	2	479.320786	956.627018	0.35739	0.0001713	-0.047146	-2.2598E-05	0.31024	0.00014871	479.3206655733141	53.486	1.6853	53.476	53.166	54.851	-0.0096092					144	61	4	0	0	0	0.00012108	3	12635	12584;12635;12683		137.42	55.534	1	5769500			16386	7564	9281	9282	20660;20661;20662	20661					0.14696978522181325
IVALLKSLV	9	Unmodified	_IVALLKSLV_					0	0	0			REV__ENSG00000197275|ENST00000336148|RAD54B	REV__ENSG00000197275|ENST00000336148|RAD54B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.739990234375	2	478.331153	954.647754	-0.05649	-2.7021E-05	0.24265	0.00011607	0.18616	8.9047E-05	478.3310931844495	62.164	0.79087	62.261	61.592	62.383	0.096985					37	28	2	0	0	0	0.25202	1	15183	15183		6.7232	2.3939	1	114100	+		16387	18723	9282	9283	20663	20663					0.16861568901845203
IVALLKSLV	9	Unmodified	_IVALLKSLV_					0	0	0			REV__ENSG00000197275|ENST00000336148|RAD54B	REV__ENSG00000197275|ENST00000336148|RAD54B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	478.331153	954.647754	0.32338	0.00015468	-0.28435	-0.00013602	0.039027	1.8668E-05	478.33088974017113	62.353	0.42533	62.345	62.25	62.675	-0.0085526	0.042038	-0.00034955	NaN	6.7232	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106750	+		16388	18723	9282	9283							0.16861568901845203
IVAPPMLPSF	10	Unmodified	_IVAPPMLPSF_					0	0	0			REV__ENSG00000103365|ENST00000309859|GGA2	REV__ENSG00000103365|ENST00000309859|GGA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.790771484375	2	536.298996	1070.58344	0.25409	0.00013627	-0.46461	-0.00024917	-0.21052	-0.0001129	536.2987514417185	26.993	0.64463	26.972	26.737	27.382	-0.021412					57	22	3	0	0	0	0.31847	1	4638	4638		6.7232	1.9672	1	594480	+		16389	14371	9283	9284	20664	20664					0.050970457534049274
IVARTQRP	8	Unmodified	_IVARTQRP_					0	0	0		ENST00000581655.1_1_17:80231026-80231098:-|nuORF	ENST00000581655.1_1_17:80231026-80231098:-|nuORF	ENST00000581655.1_1_17:80231026-80231098:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.80029296875	2	470.787976	939.561398	0.041554	1.9563E-05	-0.61095	-0.00028763	-0.56939	-0.00026806	470.78800307003576	17.02	1.4385	17.02	16.72	18.158	0					141	49	6	0	0	0	0.45942	1	1824	1824		2.5775	0.27475	1	6838000			16390	12085	9284	9285	20665	20665					0.08920002119850778
IVASFFILK	9	Unmodified	_IVASFFILK_					0	0	0		ENST00000467733.1_1_3:156262080-156272878:-|nuORF;ENSG00000114850|ENST00000265044|SSR3;nc|ENSG00000114850|Q9UNL2-2|SSR3;ENST00000498205.5_1_3:156260994-156266845:-|nuORF;ENST00000464138.1_1_3:156260994-156266628:-|nuORF	ENST00000467733.1_1_3:156262080-156272878:-|nuORF	ENST00000467733.1_1_3:156262080-156272878:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.3233642578125	2	519.323328	1036.6321	0.41981	0.00021802	-0.73071	-0.00037948	-0.31091	-0.00016146	519.3228922841562	70.196	0.68676	70.196	69.946	70.633	0					45	24	2	0	0	0	0.063853	1	17767	17767		47.749	11.622	1	749350			16391	2586	9285	9286	20666	20666					0.11525282384786806
IVASFFILK	9	Unmodified	_IVASFFILK_					0	0	0		ENST00000467733.1_1_3:156262080-156272878:-|nuORF;ENSG00000114850|ENST00000265044|SSR3;nc|ENSG00000114850|Q9UNL2-2|SSR3;ENST00000498205.5_1_3:156260994-156266845:-|nuORF;ENST00000464138.1_1_3:156260994-156266628:-|nuORF	ENST00000467733.1_1_3:156262080-156272878:-|nuORF	ENST00000467733.1_1_3:156262080-156272878:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3233032226562	2	519.323328	1036.6321	0.33843	0.00017576	-0.64259	-0.00033371	-0.30416	-0.00015796	519.3229677126434	70.211	0.78377	70.277	69.939	70.723	0.066048					48	27	2	0	0	0	0.03069	1	17760	17760		60.074	18.234	1	744130			16392	2586	9285	9286	20667	20667					0.11525282384786806
IVASFFILK	9	Unmodified	_IVASFFILK_					0	0	0		ENST00000467733.1_1_3:156262080-156272878:-|nuORF;ENSG00000114850|ENST00000265044|SSR3;nc|ENSG00000114850|Q9UNL2-2|SSR3;ENST00000498205.5_1_3:156260994-156266845:-|nuORF;ENST00000464138.1_1_3:156260994-156266628:-|nuORF	ENST00000467733.1_1_3:156262080-156272878:-|nuORF	ENST00000467733.1_1_3:156262080-156272878:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.3234252929688	2	519.323328	1036.6321	0.36202	0.000188	-0.59046	-0.00030664	-0.22844	-0.00011864	519.322993114862	70.295	0.84431	70.272	69.99	70.835	-0.02301					47	29	2	0	0	0	0.082808	1	17789	17789		49.933	13.806	1	758510			16393	2586	9285	9286	20668	20668					0.11525282384786806
IVASKSPQPRR	11	Unmodified	_IVASKSPQPRR_					0	0	0			REV__ENSG00000125378|ENST00000245451|BMP4	REV__ENSG00000125378|ENST00000245451|BMP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8695068359375	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.095	1	95.095	94.595	95.595	0								0	0	0	0.38114	1	25381	25381		1.3295	0	1		+		16394	15261	9286	9287	20669	20669					0.11614974819917734
IVATKPLYV	9	Unmodified	_IVATKPLYV_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;PABPC3|p.S464Lfs*77|1|0.19|ENSG00000151846|chr13:25097587-25097587|T/-|frameshift_variant	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.77984619140625	2	502.312961	1002.61137	0.59616	0.00029946	-0.33287	-0.0001672	0.2633	0.00013226	502.31272651866425	44.657	0.65884	44.657	44.383	45.041	0					52	23	3	0	0	0	0.12563	1	9940	9940		47.749	20.865	1	525690			16395	938	9287	9288	20670	20670					0.11016692005136974
IVATKPLYV	9	Unmodified	_IVATKPLYV_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;PABPC3|p.S464Lfs*77|1|0.19|ENSG00000151846|chr13:25097587-25097587|T/-|frameshift_variant	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7800598144531	2	502.312961	1002.61137	0.50457	0.00025345	-0.024822	-1.2468E-05	0.47975	0.00024099	502.312892262451	44.572	0.60241	44.641	44.349	44.952	0.068573					51	21	3	0	0	0	0.20167	1	9862	9862		29.082	4.4077	1	620770			16396	938	9287	9288	20671	20671					0.11016692005136974
IVATKPLYV	9	Unmodified	_IVATKPLYV_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;PABPC3|p.S464Lfs*77|1|0.19|ENSG00000151846|chr13:25097587-25097587|T/-|frameshift_variant	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.31304931640625	2	502.312961	1002.61137	0.47873	0.00024047	-0.024309	-1.221E-05	0.45442	0.00022826	502.3128758600926	44.583	0.68325	44.658	44.389	45.072	0.075047					57	24	3	0	0	0	0.08298	1	9911	9911		60.074	23.947	1	535760			16397	938	9287	9288	20672	20672					0.11016692005136974
IVCVFFKI	8	Unmodified	_IVCVFFKI_					0	0	0		ENST00000229595.5_1_6:119215395-119215593:+|nuORF	ENST00000229595.5_1_6:119215395-119215593:+|nuORF	ENST00000229595.5_1_6:119215395-119215593:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.788330078125	2	484.785524	967.556496	0.52356	0.00025381	-0.16067	-7.7892E-05	0.36288	0.00017592	484.7880193184683	36.025	0.92458	36.111	35.73	36.654	0.086246					131	32	6	0	0	0	0.43727	1	7308	7308		10.183	0	1	3060400			16398	8856	9288	9289	20673	20673					0.07141981932875296
IVDDRTLKL	9	Unmodified	_IVDDRTLKL_					0	0	0			REV__nc|ENSG00000135457|Q12800-2|TFCP2	REV__nc|ENSG00000135457|Q12800-2|TFCP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2963256835938	2	536.821681	1071.62881	0.32645	0.00017525	-3.0467	-0.0016355	-2.7202	-0.0014603	536.82142378395	30.801	0.72583	30.829	30.496	31.222	0.027948					52	25	4	0	0	0	0.25123	1	5683	5683		12.241	2.8575	1	282730	+		16399	15743	9289	9290	20674	20674					0.09585987540140195
IVDFYPED	8	Unmodified	_IVDFYPED_					0	0	0		ENSG00000184162|ENST00000331552|NR2C2AP;ENST00000539693.1_1_19:19312736-19313791:-|nuORF;nc|ENSG00000184162|Q86WQ0-2|NR2C2AP	ENSG00000184162|ENST00000331552|NR2C2AP	ENSG00000184162|ENST00000331552|NR2C2AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2289733886719	2	499.22929	996.444028	0.23701	0.00011832	-0.18421	-9.1961E-05	0.052798	2.6359E-05	499.22910086728496	69.454	1.014	69.432	69.123	70.137	-0.022087					77	36	3	0	0	0	0.39956	1	17621	17621		19.439	4.8573	1	1664600			16400	7432	9290	9291	20675	20675					-0.05433620330279609
IVDPKRPLM	9	Unmodified	_IVDPKRPLM_					0	0	0		ENSG00000164161|ENST00000296575|HHIP	ENSG00000164161|ENST00000296575|HHIP	ENSG00000164161|ENST00000296575|HHIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7774047851562	2	534.815344	1067.61614	0.6568	0.00035127	-0.53214	-0.0002846	0.12466	6.667E-05	534.8150031826027	51.133	0.56725	51.143	50.861	51.428	0.0095673					32	21	2	0	0	0	0.24688	1	11985	11985		10.074	5.7447	1	185260			16401	5801	9291	9292	20676	20676					0.08503252876244005
IVDPKRPLM	9	Unmodified	_IVDPKRPLM_					0	0	0		ENSG00000164161|ENST00000296575|HHIP	ENSG00000164161|ENST00000296575|HHIP	ENSG00000164161|ENST00000296575|HHIP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	534.815344	1067.61614	0.71309	0.00038137	-1.1858	-0.00063418	-0.47271	-0.00025281	534.8147213615777	51.112	0.5845	51.112	50.872	51.456	0	-0.015291	-0.00057911	NaN	10.074	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122830			16402	5801	9291	9292							0.08503252876244005
IVDQWIRFFLK	11	Unmodified	_IVDQWIRFFLK_					0	0	0		ENSG00000268235|ENST00000622971|TCP11X1;ENSG00000215029|ENST00000642911|TCP11X2	ENSG00000268235|ENST00000622971|TCP11X1	ENSG00000268235|ENST00000622971|TCP11X1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.30291748046875	3	488.950245	1463.82891	0.34484	0.00016861	1.5801	0.00077261	1.925	0.00094122	488.9508499330683	29.677	0.58559	29.69	29.331	29.917	0.012266					38	19	3	0	0	0	0.3331	1	5351	5351		2.2527	1.7982	1	180160			16403	8398	9292	9293	20677	20677					0.11554462207732286
IVEAVNHLTLF	11	Unmodified	_IVEAVNHLTLF_					0	0	0			REV__nc|ENSG00000134490|Q24JQ0-3|TMEM241	REV__nc|ENSG00000134490|Q24JQ0-3|TMEM241	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.5241394042969	3	419.239684	1254.69722	-0.40938	-0.00017163	0.070484	2.955E-05	-0.33889	-0.00014208	419.23966227373353	39.124	0.63663	39.124	38.844	39.48	0					46	22	3	0	0	0	0.33169	1	8259	8259		6.2344	0.83165	1	369350	+		16404	15678	9293	9294	20678	20678					0.08006232119987544
IVEELDMMKY	10	Unmodified	_IVEELDMMKY_					0	0	0			REV__nc|ENSG00000170242|Q96K76-2|USP47	REV__nc|ENSG00000170242|Q96K76-2|USP47	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.30572509765625	3	424.206775	1269.5985	0.031362	1.3304E-05	0.078945	3.3489E-05	0.11031	4.6793E-05	424.20674524821817	23.615	0.42915	23.576	23.364	23.793	-0.038927					26	14	2	0	0	0	0.32122	1	3565	3565		2.086	0.34373	1	151100	+		16405	17566	9294	9295	20679	20679					-0.025518752315747406
IVEIKRRH	8	Unmodified	_IVEIKRRH_					0	0	0			REV__L1MEc_dup2393|chr2:91786407-91787312:+|1.5245654449372528|0.182273929221285|3.06|513.0|37|3|sense	REV__L1MEc_dup2393|chr2:91786407-91787312:+|1.5245654449372528|0.182273929221285|3.06|513.0|37|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7785034179688	2	525.830175	1049.6458	0.68532	0.00036036	-0.30141	-0.00015849	0.38391	0.00020187	525.8298911047684	29.626	0.53559	29.626	29.324	29.86	0					27	18	2	0	0	0	0.34167	1	5337	5337		11.64	2.2572	1	130260	+		16406	22800	9295	9296	20680	20680					0.1229595293661987
IVEKIQAK	8	Unmodified	_IVEKIQAK_					0	0	0		nc|ENSG00000133318|O95197-3|RTN3;nc|ENSG00000133318|O95197-4|RTN3;nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3	nc|ENSG00000133318|O95197-3|RTN3	nc|ENSG00000133318|O95197-3|RTN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.16168212890625	2	464.794935	927.575317	0.16884	7.8477E-05	-0.25565	-0.00011883	-0.086811	-4.0349E-05	464.7947479376132	24.178	0.57054	24.139	23.848	24.418	-0.038927					34	19	2	0	0	0	0.3366	1	3710	3710		7.9102	0	1	185000			16407	3706	9296	9297	20681	20681					0.10863234828264012
IVELWVLT	8	Unmodified	_IVELWVLT_					0	0	0		ENST00000461409.1_1_7:18542099-18542232:+|nuORF	ENST00000461409.1_1_7:18542099-18542232:+|nuORF	ENST00000461409.1_1_7:18542099-18542232:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7997131347656	2	486.791861	971.569169	0.42241	0.00020563	-3.7301	-0.0018158	-3.3077	-0.0016102	486.79176348244704	83.261	0.93842	83.334	82.956	83.894	0.073097					75	36	3	0	0	0	0.42758	1	21860	21860		13.508	0	1	212230			16408	10745	9297	9298	20682	20682					0.0822471659673738
IVEQDTMPPK	10	Oxidation (M)	_IVEQDTM(Oxidation (M))PPK_		IVEQDTM(1)PPK		IVEQDTM(67)PPK	0	0	1		nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.2947387695312	2	587.294639	1172.57472	0.1467	8.6158E-05	0.22319	0.00013108	0.36989	0.00021723	587.2946709027232	23.294	0.68887	23.294	22.791	23.48	0					68	23	4	0	0	0	0.024262	2	3432	3388;3432		67.081	25.125	1	626420			16409	852	9298	9299	20683;20684	20684		107			-0.004659726737600067
IVEQDTMPPK	10	Oxidation (M)	_IVEQDTM(Oxidation (M))PPK_		IVEQDTM(1)PPK		IVEQDTM(51)PPK	0	0	1		nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.2947387695312	2	587.294639	1172.57472	0.19889	0.00011681	-0.25507	-0.0001498	-0.05618	-3.2994E-05	587.29445993056	23.676	0.54925	23.676	23.48	24.029	0					55	18	4	0	0	0	0.08437	2	3489	3489;3547		51.488	19.237	1	396260			16410	852	9298	9299	20685;20686	20685		107			-0.004659726737600067
IVEQDTMPPK	10	Oxidation (M)	_IVEQDTM(Oxidation (M))PPK_		IVEQDTM(1)PPK		IVEQDTM(59)PPK	0	0	1		nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.2946166992188	2	587.294639	1172.57472	0.13811	8.1109E-05	0.28557	0.00016772	0.42368	0.00024882	587.2947190386636	23.366	0.77456	23.279	22.711	23.486	-0.087608					72	27	4	0	0	0	0.049822	3	3403	3403;3447;3490		59.052	26.74	1	600850			16411	852	9298	9299	20687;20688;20689	20687		107			-0.004659726737600067
IVEQDTMPPK	10	Oxidation (M)	_IVEQDTM(Oxidation (M))PPK_		IVEQDTM(1)PPK		IVEQDTM(59)PPK	0	0	1		nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.294677734375	2	587.294639	1172.57472	0.21742	0.00012769	-0.26194	-0.00015384	-0.044514	-2.6143E-05	587.2943691355541	23.741	0.83958	23.668	23.368	24.207	-0.072559					76	28	4	0	0	0	0.049822	2	3543	3543;3596		59.052	22.741	1	382280			16412	852	9298	9299	20690;20691	20690		107			-0.004659726737600067
IVEQDTMPPK	10	Oxidation (M)	_IVEQDTM(Oxidation (M))PPK_		IVEQDTM(1)PPK		IVEQDTM(63)PPK	0	0	1		nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.2944946289062	2	587.294639	1172.57472	0.34598	0.00020319	-0.027383	-1.6082E-05	0.3186	0.00018711	587.2944982549064	23.378	0.85071	23.333	22.735	23.586	-0.044867					85	30	4	0	0	0	0.032393	2	3397	3397;3441		62.869	26.362	1	568330			16413	852	9298	9299	20692;20693	20692		107			-0.004659726737600067
IVEQDTMPPK	10	Oxidation (M)	_IVEQDTM(Oxidation (M))PPK_		IVEQDTM(1)PPK		IVEQDTM(59)PPK	0	0	1		nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.29443359375	2	587.294639	1172.57472	0.44178	0.00025946	-0.45819	-0.00026909	-0.016406	-9.6349E-06	587.2943048370328	23.782	0.57454	23.743	23.534	24.108	-0.038927					58	19	4	0	0	0	0.049822	3	3546	3497;3502;3546		59.052	22.546	1	432160			16414	852	9298	9299	20694;20695;20696	20696		107			-0.004659726737600067
IVEYAYTGTV	10	Unmodified	_IVEYAYTGTV_					0	0	0		nc|ENSG00000179454|Q9NXS3-2|KLHL28;ENSG00000179454|ENST00000396128|KLHL28	nc|ENSG00000179454|Q9NXS3-2|KLHL28	nc|ENSG00000179454|Q9NXS3-2|KLHL28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8024291992188	2	558.284597	1114.55464	0.27478	0.00015341	-4.4898	-0.0025066	-4.2151	-0.0023532	558.2819626941525	93.847	0.093498	93.933	93.872	93.965	0.08667					9	6	2	0	0	0	0.3156	1	24989	24989		10.824	2.2306	1	58084			16415	7125	9299	9300	20697	20697					0.0019459965794794698
IVFGLLFDT	9	Unmodified	_IVFGLLFDT_					0	0	0			REV__nc|ENSG00000290584|Q9P1P4|TAAR3P	REV__nc|ENSG00000290584|Q9P1P4|TAAR3P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.9854125976562	2	512.789318	1023.56408	0.090133	4.6219E-05	0.4187	0.00021471	0.50884	0.00026093	513.2909939537188	95.812	0.056679	95.812	95.774	95.831	0					8	5	2	0	0	0	0.25526	1	25580	25580		7.9102	0	1	59143	+		16416	23249	9300	9301	20698	20698					0.05324412734148609
IVFGLLFDT	9	Unmodified	_IVFGLLFDT_					0	0	0			REV__nc|ENSG00000290584|Q9P1P4|TAAR3P	REV__nc|ENSG00000290584|Q9P1P4|TAAR3P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.9855346679688	2	512.789318	1023.56408	0.31447	0.00016126	0.22526	0.00011551	0.53973	0.00027677	512.7893529907259	94.632	0.20394	94.63	94.479	94.683	-0.0020065					31	20	2	0	0	0	0.25066	1	25214	25214		11.64	0	1	56360	+		16417	23249	9300	9301	20699	20699					0.05324412734148609
IVFNIYHSK	9	Unmodified	_IVFNIYHSK_					0	0	0		SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant;SEC14L1|p.V620Efs*51|1|0.16|ENSG00000129657|chr17:77212192-77212193|-/TCTGAAAAAG|frameshift_variant;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.3638916015625	2	560.811116	1119.60768	0.082153	4.6073E-05	0.15661	8.7829E-05	0.23876	0.0001339	560.8112551023969	41.182	0.37152	41.182	41.01	41.382	0					31	13	3	0	0	0	0.11018	1	8833	8833		45.74	21.719	1	339910			16418	3434	9301	9302	20700	20700					0.05266022231262468
IVFNKELTF	9	Unmodified	_IVFNKELTF_					0	0	0			REV__nc|ENSG00000142173|P12110-3|COL6A2	REV__nc|ENSG00000142173|P12110-3|COL6A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2694091796875	2	555.813325	1109.6121	0.34397	0.00019118	-2.8528	-0.0015856	-2.5088	-0.0013944	556.3122916022618	71.082	0.52849	71.082	70.902	71.431	0					31	18	2	0	0	0	0.21137	1	18045	18045		24.674	11.166	1	306880	+		16419	16102	9302	9303	20701	20701					0.06167486654157983
IVFNKELTF	9	Unmodified	_IVFNKELTF_					0	0	0			REV__nc|ENSG00000142173|P12110-3|COL6A2	REV__nc|ENSG00000142173|P12110-3|COL6A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8019409179688	2	555.813325	1109.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.734	1	70.794	70.294	71.294	0.060783								0	0	0	0.16935	1	17936	17936		30.225	3.8835	1		+		16420	16102	9302	9303	20702	20702					0.06167486654157983
IVFNKELTF	9	Unmodified	_IVFNKELTF_					0	0	0			REV__nc|ENSG00000142173|P12110-3|COL6A2	REV__nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.802001953125	2	555.813325	1109.6121	0.30801	0.0001712	-1.496	-0.00083148	-1.188	-0.00066029	555.8129745210321	70.508	0.95596	70.483	70.015	70.971	-0.024872					42	33	2	0	0	0	0.20344	1	17949	17949		23.148	5.0134	1	196920	+		16421	16102	9302	9303	20703	20703					0.06167486654157983
IVFNKELTF	9	Unmodified	_IVFNKELTF_					0	0	0			REV__nc|ENSG00000142173|P12110-3|COL6A2	REV__nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	555.813325	1109.6121	0.33645	0.000187	-1.1098	-0.00061686	-0.77338	-0.00042986	555.8130135990427	70.452	0.68475	70.452	69.972	70.657	0	-0.003182	0.00045941	NaN	23.148	35	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244200	+		16422	16102	9302	9303							0.06167486654157983
IVFNKELTF	9	Unmodified	_IVFNKELTF_					0	0	0			REV__nc|ENSG00000142173|P12110-3|COL6A2	REV__nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	555.813325	1109.6121	0.34687	0.0001928	-1.8888	-0.0010498	-1.542	-0.00085705	555.8125897558764	70.369	0.42236	70.43	70.237	70.659	0.060783	-0.024736	-0.00040657	NaN	23.148	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207530	+		16423	16102	9302	9303							0.06167486654157983
IVFNKELTF	9	Unmodified	_IVFNKELTF_					0	0	0			REV__nc|ENSG00000142173|P12110-3|COL6A2	REV__nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	555.813325	1109.6121	0.30801	0.0001712	-1.496	-0.00083148	-1.188	-0.00066029	555.8129745210321	70.508	0.95596	70.483	70.015	70.971	-0.024872	0.027918	3.0162E-05	NaN	23.148	42	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196920	+		16424	16102	9302	9303							0.06167486654157983
IVFNKPLI	8	Unmodified	_IVFNKPLI_					0	0	0			REV__ENST00000540714.1_1_9:5919686-5933837:-|nuORF	REV__ENST00000540714.1_1_9:5919686-5933837:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7818603515625	2	472.302396	942.590239	0.57883	0.00027338	-0.56197	-0.00026542	0.016857	7.9614E-06	472.3020552055409	48.142	0.23963	48.19	48.101	48.341	0.04752					11	8	2	0	0	0	0.34297	1	11031	11031		0.79363	0.79363	1	144840	+		16425	18258	9303	9304	20704	20704					0.11664726696278649
IVFTYGQK	8	Unmodified	_IVFTYGQK_					0	0	0			REV__ENST00000525379.1_1_11:66985159-66986889:+|nuORF	REV__ENST00000525379.1_1_11:66985159-66986889:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2639465332031	2	478.26601	954.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.916	1	95.912	95.412	96.412	-0.0038147								0	0	0	0.35251	1	25636	25636		13.508	0.97634	1		+		16426	17759	9304	9305	20705	20705					0.0383897290286086
IVFVLELPTE	10	Unmodified	_IVFVLELPTE_					0	0	0			REV__ENSG00000215018|ENST00000399429|COL28A1	REV__ENSG00000215018|ENST00000399429|COL28A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3349609375	2	580.33409	1158.65363	0.48551	0.00028176	0.82415	0.00047828	1.3097	0.00076004	580.3352388400133	58.691	2.7441	58.676	58.169	60.913	-0.014267					295	98	6	0	0	0	0.20278	1	14352	14352		32.305	1.6689	1	61730000	+		16427	19072	9305	9306	20706	20706					0.0806462262282821
IVGALIGSLV	10	Unmodified	_IVGALIGSLV_					0	0	0		ENSG00000101842|ENST00000217957|VSIG1;nc|ENSG00000101842|Q86XK7-2|VSIG1	ENSG00000101842|ENST00000217957|VSIG1	ENSG00000101842|ENST00000217957|VSIG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.28692626953125	2	471.305136	940.595718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.67	1	59.658	59.158	60.158	-0.011486								0	0	0	0.33354	1	14536	14536		21.747	2.4897	1				16428	1723	9306	9307	20707	20707					0.12304405488089287
IVGDWWEQPGQ	11	Unmodified	_IVGDWWEQPGQ_					0	0	0		ENSG00000249115|ENST00000203166|HAUS5	ENSG00000249115|ENST00000203166|HAUS5	ENSG00000249115|ENST00000203166|HAUS5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.2573547363281	3	438.875293	1313.60405	0.15907	6.9814E-05	2.5011	0.0010977	2.6601	0.0011675	439.21017901951717	23.734	0.2314	23.695	23.562	23.793	-0.038927					10	7	2	0	0	0	0.33296	1	3522	3522		2.6312	0.88896	1	12535			16429	8583	9307	9308	20708	20708					-0.04020692333256193
IVGPMFLYL	9	Oxidation (M)	_IVGPM(Oxidation (M))FLYL_		IVGPM(1)FLYL		IVGPM(67)FLYL	0	0	1		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.783935546875	2	534.793546	1067.57254	0.38226	0.00020443	0.21281	0.00011381	0.59507	0.00031824	534.7934368349569	86.638	0.61125	86.723	86.6	87.212	0.085335					46	24	2	0	0	0	0.044139	1	22819	22819		67.413	44.265	1	253460			16430	5933	9308	9309	20709	20709		701			0.041456433790926894
IVGTIAGIVI	10	Unmodified	_IVGTIAGIVI_					0	0	0		ENSG00000173702|ENST00000616727|MUC13	ENSG00000173702|ENST00000616727|MUC13	ENSG00000173702|ENST00000616727|MUC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.31304931640625	2	478.312961	954.611368	0.34335	0.00016423	-0.16977	-8.1202E-05	0.17358	8.3026E-05	478.3127986167787	70.816	1.9933	70.791	70.407	72.401	-0.024864					137	71	4	0	0	0	0.29978	1	18104	18104		20.454	1.1966	1	5914400			16431	6743	9309	9310	20710	20710					0.13224692005132965
IVGTVLIIK	9	Unmodified	_IVGTVLIIK_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.3317565917969	2	478.331153	954.647754	0.41999	0.0002009	-0.27752	-0.00013275	0.14247	6.815E-05	478.3313590416564	53.978	2.617	53.978	53.595	56.212	0					258	95	5	0	0	0	1.2283E-05	13	12772	12725;12772;12821;12863;12914;12964;13021;13071;13132;13178;13232;13289;13342		155.03	28.46	1	38097000			16432	8471	9310	9311	20711;20712;20713;20714;20715;20716;20717;20718;20719;20720;20721;20722;20723	20712					0.16861568901845203
IVGTVLIIK	9	Unmodified	_IVGTVLIIK_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.33099365234375	2	478.331153	954.647754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.768	1	59.768	59.268	60.268	0								0	0	0	0.21009	1	14573	14573		19.257	4.4187	1				16433	8471	9310	9311	20724	20724					0.16861568901845203
IVGTVLIIK	9	Unmodified	_IVGTVLIIK_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.3319091796875	2	478.331153	954.647754	0.29828	0.00014268	-0.14	-6.6967E-05	0.15828	7.5709E-05	478.3314213005654	53.916	2.3586	53.972	53.585	55.944	0.056255					259	88	5	0	0	0	1.2283E-05	10	12764	12717;12764;12813;12863;12916;13016;13065;13116;13194;13247		155.03	28.46	1	37202000			16434	8471	9310	9311	20725;20726;20727;20728;20729;20730;20731;20732;20733;20734	20726					0.16861568901845203
IVGTVLIIK	9	Unmodified	_IVGTVLIIK_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.3311462402344	2	478.331153	954.647754	0.40038	0.00019151	-0.20759	-9.9298E-05	0.19279	9.2216E-05	478.331321799413	53.948	2.5577	53.938	53.611	56.168	-0.0096359					256	93	5	0	0	0	9.2305E-05	12	12724	12724;12771;12814;12859;12901;12954;13000;13053;13105;13153;13210;13371		142.08	27.109	1	40579000			16435	8471	9310	9311	20735;20736;20737;20738;20739;20740;20741;20742;20743;20744;20745;20746	20735					0.16861568901845203
IVHMESEI	8	Unmodified	_IVHMESEI_					0	0	0		ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.29376220703125	2	479.239135	956.463718	0.69584	0.00033347	2.1291	0.0010203	2.8249	0.0013538	479.24019230685315	56.328	0.48361	56.406	56.221	56.704	0.078674					25	17	2	0	0	0	0.33995	1	13594	13594		15.768	5.5848	1	366760			16436	5097	9311	9312	20747	20747					-0.016255675911679646
IVHMESEI	8	Unmodified	_IVHMESEI_					0	0	0		ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	ENSG00000153975|ENST00000368576|ZUP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	479.239135	956.463718	0.51129	0.00024503	2.1488	0.0010298	2.6601	0.0012748	479.2400768506401	56.463	0.53102	56.463	56.241	56.772	0	0.028229	5.0022E-06	NaN	15.768	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337230			16437	5097	9311	9312							-0.016255675911679646
IVHVHSEL	8	Unmodified	_IVHVHSEL_					0	0	0		ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000573832.1_1_16:70508742-70509675:+|nuORF;ENST00000464499.5_1_16:70508533-70512710:+|nuORF	ENSG00000157353|ENST00000288078|FCSK	ENSG00000157353|ENST00000288078|FCSK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.26385498046875	2	467.261259	932.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.36	1	114.34	113.84	114.84	-0.019096								0	0	0	0.37664	1	29698	29698		2.5775	0.27475	1				16438	5299	9312	9313	20748	20748					0.03901204617318399
IVHVHSEL	8	Unmodified	_IVHVHSEL_					0	0	0		ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000573832.1_1_16:70508742-70509675:+|nuORF;ENST00000464499.5_1_16:70508533-70512710:+|nuORF	ENSG00000157353|ENST00000288078|FCSK	ENSG00000157353|ENST00000288078|FCSK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.262451171875	2	467.261259	932.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.32	1	115.3	114.8	115.8	-0.020988								0	0	0	0.37664	1	29910	29910		2.5775	0.51773	1				16439	5299	9312	9313	20749	20749					0.03901204617318399
IVIDFDSINSR	11	Unmodified	_IVIDFDSINSR_					0	0	0		ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD	ENSG00000129187|ENST00000438320|DCTD	ENSG00000129187|ENST00000438320|DCTD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	639.838134765625	2	639.838059	1277.66157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.874	1	59.863	59.363	60.363	-0.011486								0	0	0	0.2684	1	14599	14599		30.431	14.282	1				16440	3414	9313	9314	20750	20750					0.033841498723404584
IVIHIRNK	8	Unmodified	_IVIHIRNK_					0	0	0		ENST00000490881.5_1_1:163291794-163297702:+|nuORF;ENST00000487578.2_1_1:163295841-163298095:+|nuORF;ENSG00000143228|ENST00000271452|NUF2	ENST00000490881.5_1_1:163291794-163297702:+|nuORF	ENST00000490881.5_1_1:163291794-163297702:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.29034423828125	2	496.821818	991.629084	0.37347	0.00018555	-0.49267	-0.00024477	-0.1192	-5.9223E-05	496.82153320367763	43.552	0.37866	43.552	43.388	43.767	0					14	13	2	0	0	0	0.34218	1	9588	9588		5.2307	0	1	133620			16441	4492	9314	9315	20751	20751					0.13293452050641008
IVIHKAKAF	9	Unmodified	_IVIHKAKAF_					0	0	0			REV__nc|ENSG00000124523|Q9NXA8-3|SIRT5	REV__nc|ENSG00000124523|Q9NXA8-3|SIRT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.3088989257812	2	513.826569	1025.63859	0.29552	0.00015185	-1.0692	-0.00054941	-0.77372	-0.00039756	513.8259383174046	40.599	0.54594	40.698	40.26	40.806	0.099407					28	19	2	0	0	0	0.25291	1	8599	8599		5.2307	0	1	109420	+		16442	15238	9315	9316	20752	20752					0.12679220336167418
IVIHLGTSLY	10	Unmodified	_IVIHLGTSLY_					0	0	0			REV__ENST00000233813.4_1_2:217540303-217540537:-|nuORF	REV__ENST00000233813.4_1_2:217540303-217540537:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.784423828125	2	558.326599	1114.63865	0.24869	0.00013885	-0.38545	-0.0002152	-0.13676	-7.6356E-05	558.325560711687	92.321	0.71499	92.321	91.885	92.6	0					73	51	3	0	0	0	0.318	1	24453	24453		7.2892	0.56607	1	83463	+		16443	19478	9316	9317	20753	20753					0.0859117554552995
IVILILSFLF	10	Unmodified	_IVILILSFLF_					0	0	0			REV__ENST00000463427.5_1_2:112843607-112863481:+|nuORF	REV__ENST00000463427.5_1_2:112843607-112863481:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3447875976562	2	589.383386	1176.75222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.069	1	98.131	97.631	98.631	0.061516								0	0	0	0.3749	1	26242	26242		4.3292	2.2695	1		+		16444	16615	9317	9318	20754	20754					0.17091270658556823
IVINNMITT	9	Unmodified	_IVINNMITT_					0	0	0			REV__ENSG00000083093|ENST00000261584|PALB2	REV__ENSG00000083093|ENST00000261584|PALB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.28228759765625	2	509.78371	1017.55287	0.18009	9.1809E-05	0.10913	5.5631E-05	0.28922	0.00014744	509.78384339594913	26.504	0.51326	26.466	26.206	26.72	-0.03867					32	17	2	0	0	0	0.25417	1	4395	4395		8.5933	0.68312	1	85648	+		16445	13928	9318	9319	20755	20755					0.04479267368344608
IVIQKKIT	8	Unmodified	_IVIQKKIT_					0	0	0		ENST00000484800.6_1_10:13212966-13213011:+|nuORF	ENST00000484800.6_1_10:13212966-13213011:+|nuORF	ENST00000484800.6_1_10:13212966-13213011:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7536926269531	2	471.820953	941.627353	0.17855	8.4241E-05	-0.099162	-4.6787E-05	0.079383	3.7455E-05	471.8208080397958	24.577	0.46863	24.504	24.234	24.702	-0.072559					26	15	2	0	0	0	0.34294	1	3837	3837		7.2892	0	1	108160			16446	11080	9319	9320	20756	20756					0.15420398242031297
IVKDEFNL	8	Unmodified	_IVKDEFNL_					0	0	0			REV__ENST00000533085.2_1_12:89894355-89894541:+|nuORF	REV__ENST00000533085.2_1_12:89894355-89894541:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.34173583984375	2	489.26875	976.522947	0.39129	0.00019145	1.1127	0.00054441	1.504	0.00073586	489.2693651768506	65.576	0.73846	65.576	65.242	65.981	0					37	26	2	0	0	0	0.32886	1	16332	16332		21.747	1.293	1	167230	+		16447	22040	9320	9321	20757	20757					0.033746516946507654
IVKEKVHL	8	Unmodified	_IVKEKVHL_					0	0	0		ENSG00000086712|ENST00000380122|TXLNG;nc|ENSG00000086712|Q9NUQ3-2|TXLNG	ENSG00000086712|ENST00000380122|TXLNG	ENSG00000086712|ENST00000380122|TXLNG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.8028259277344	2	483.310752	964.606951	0.097937	4.7334E-05	-0.111	-5.3647E-05	-0.013062	-6.3131E-06	483.31069109439596	65.328	0.43217	65.317	65.098	65.53	-0.011337					25	15	2	0	0	0	0.43043	1	16251	16251		12.532	1.7076	1	184230			16448	1285	9321	9322	20758	20758					0.12323227582214713
IVKFPRESFD	10	Unmodified	_IVKFPRESFD_					0	0	0		ENSG00000170832|ENST00000300896|USP32;ENST00000425211.5_1_17:18418869-18422825:-|nuORF	ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.555908203125	3	413.224034	1236.65027	0.16843	6.9598E-05	0.17786	7.3498E-05	0.34629	0.0001431	413.2241231481589	44.948	1.7166	44.948	44.115	45.832	0					105	62	3	0	0	0	0.31746	1	10088	10088		9.544	5.9569	1	834630			16449	6482	9322	9323	20759	20759					0.04141372568847146
IVKGKIALT	9	Unmodified	_IVKGKIALT_					0	0	0			REV__ENSG00000173208|ENST00000308666|ABCD2	REV__ENSG00000173208|ENST00000308666|ABCD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2943420410156	2	471.820953	941.627353	0.23988	0.00011318	0.15536	7.3301E-05	0.39524	0.00018648	471.8209329212374	49.39	0.35326	49.39	49.135	49.488	0					17	12	2	0	0	0	0.21905	1	11321	11321		23.148	5.0134	1	120920	+		16450	17768	9323	9324	20760	20760					0.1542039824200856
IVKGKIALT	9	Unmodified	_IVKGKIALT_					0	0	0			REV__ENSG00000173208|ENST00000308666|ABCD2	REV__ENSG00000173208|ENST00000308666|ABCD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2942199707031	2	471.820953	941.627353	0.14141	6.6718E-05	-0.0048712	-2.2983E-06	0.13653	6.442E-05	471.8208857517823	49.375	0.35597	49.42	49.21	49.566	0.044891					17	12	2	0	0	0	0.21905	1	11313	11313		23.148	5.0134	1	153490	+		16451	17768	9323	9324	20761	20761					0.1542039824200856
IVKGKIALT	9	Unmodified	_IVKGKIALT_					0	0	0			REV__ENSG00000173208|ENST00000308666|ABCD2	REV__ENSG00000173208|ENST00000308666|ABCD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.294189453125	2	471.820953	941.627353	0.097459	4.5983E-05	0.19832	9.3569E-05	0.29577	0.00013955	471.8210750980672	49.363	0.36845	49.395	49.18	49.548	0.032043					19	12	2	0	0	0	0.20651	1	11322	11322		26.884	13.376	1	154400	+		16452	17768	9323	9324	20762	20762					0.1542039824200856
IVKHEFECKVE	11	Unmodified	_IVKHEFECKVE_					0	0	0			REV__nc|ENSG00000182670|P53804-3|TTC3	REV__nc|ENSG00000182670|P53804-3|TTC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2356872558594	3	454.235834	1359.68567	-0.093996	-4.2696E-05	-0.53129	-0.00024133	-0.62528	-0.00028403	454.2355796749442	31.213	0.63201	31.255	30.911	31.543	0.042364					49	22	3	0	0	0	0.3322	1	5801	5801		4.7159	0.30977	1	374650	+		16453	18209	9324	9325	20763	20763					0.0202166703434159
IVKHEFECKVE	11	Unmodified	_IVKHEFECKVE_					0	0	0			REV__nc|ENSG00000182670|P53804-3|TTC3	REV__nc|ENSG00000182670|P53804-3|TTC3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	454.235834	1359.68567	-0.035987	-1.6346E-05	0.1509	6.8545E-05	0.11492	5.2199E-05	454.2357191560672	31.282	0.6313	31.282	30.979	31.61	0	0.042176	0.00077502	NaN	4.7159	54	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322490	+		16454	18209	9324	9325							0.0202166703434159
IVKHEFECKVE	11	Unmodified	_IVKHEFECKVE_					0	0	0			REV__nc|ENSG00000182670|P53804-3|TTC3	REV__nc|ENSG00000182670|P53804-3|TTC3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	454.235834	1359.68567	0.09326	4.2362E-05	-0.39189	-0.00017801	-0.29863	-0.00013565	454.23558365904955	31.142	0.5188	31.183	30.988	31.507	0.040991	-0.057369	3.5353E-05	NaN	4.7159	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286770	+		16455	18209	9324	9325							0.0202166703434159
IVKLEHPKP	9	Unmodified	_IVKLEHPKP_					0	0	0			REV__ENSG00000134109|ENST00000256497|EDEM1	REV__ENSG00000134109|ENST00000256497|EDEM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2871704101562	2	530.829309	1059.64407	0.28266	0.00015004	-2.3493	-0.0012471	-2.0666	-0.001097	530.8279706706918	38.97	0.71509	39.063	38.675	39.39	0.09267					42	25	2	0	0	0	0.22674	1	8199	8199		22.736	2.2827	1	353100	+		16456	15654	9325	9326	20764	20764					0.11662899127986748
IVKLIGVIT	9	Unmodified	_IVKLIGVIT_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;ENST00000519899.5_1_8:141756852-141774450:-|nuORF;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-3|PTK2;nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7818908691406	2	478.331153	954.647754	0.31464	0.0001505	-0.1303	-6.2325E-05	0.18435	8.8179E-05	478.3310687812841	56.536	1.3663	56.536	56.212	57.578	0					82	50	2	0	0	0	0.24311	1	13867	13867		16.942	0	1	305700			16457	6354	9326	9327	20765	20765					0.16861568901833834
IVKLVSVLS	9	Unmodified	_IVKLVSVLS_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.753173828125	2	479.320786	956.627018	0.26794	0.00012843	-0.15438	-7.3999E-05	0.11355	5.4429E-05	479.32063864519057	58.961	0.67001	59.052	58.764	59.434	0.091305					33	23	2	0	0	0	0.2451	1	14397	14397		10.824	0	1	197790			16458	595	9327	9328	20766	20766					0.14696978522169957
IVKNVPAI	8	Unmodified	_IVKNVPAI_					0	0	0			REV__CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant	REV__CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.26458740234375	2	427.278921	852.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.588	1	47.588	47.088	48.088	0								0	0	0	0.36961	1	10818	10818		5.7604	0	1		+		16459	13290	9328	9329	20767	20767					0.11111867145120868
IVKPAKGP	8	Unmodified	_IVKPAKGP_					0	0	0		ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-2|RBBP6	ENSG00000122257|ENST00000319715|RBBP6	ENSG00000122257|ENST00000319715|RBBP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.8389587402344	2	405.265813	808.517074	-0.21735	-8.8085E-05	0.25575	0.00010365	0.038404	1.5564E-05	405.265861208353	33.231	0.47275	33.231	33.039	33.512	0					24	16	2	0	0	0	0.31934	1	6501	6501		18.135	0	1	89070			16460	3036	9329	9330	20768	20768					0.10515597973653712
IVKPCRPHYI	10	Unmodified	_IVKPCRPHYI_					0	0	0			REV__ENST00000531050.5_1_6:128321419-128718758:-|nuORF	REV__ENST00000531050.5_1_6:128321419-128718758:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.9049072265625	3	409.233988	1224.68013	0.041998	1.7187E-05	1.1302	0.00046252	1.1722	0.00047971	409.2348136267474	36.428	0.73325	36.428	36.168	36.902	0					36	25	2	0	0	0	0.31746	1	7490	7490		9.544	1.0997	1	264820	+		16461	22017	9330	9331	20769	20769					0.07678033033198517
IVKRITFLK	9	Unmodified	_IVKRITFLK_					0	0	0		nc|ENSG00000170482|Q9UHI7-3|SLC23A1;ENSG00000170482|ENST00000348729|SLC23A1;nc|ENSG00000170482|Q9UHI7-2|SLC23A1	nc|ENSG00000170482|Q9UHI7-3|SLC23A1	nc|ENSG00000170482|Q9UHI7-3|SLC23A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8031616210938	2	559.376426	1116.7383	0.71267	0.00039865	-0.62082	-0.00034727	0.09185	5.1379E-05	559.3761378188044	37.462	0.42019	37.462	37.259	37.679	0					26	14	2	0	0	0	0.25323	1	7743	7743		10.074	2.1638	1	209840			16462	6456	9331	9332	20770	20770					0.1846003795010347
IVKRITFLK	9	Unmodified	_IVKRITFLK_					0	0	0		nc|ENSG00000170482|Q9UHI7-3|SLC23A1;ENSG00000170482|ENST00000348729|SLC23A1;nc|ENSG00000170482|Q9UHI7-2|SLC23A1	nc|ENSG00000170482|Q9UHI7-3|SLC23A1	nc|ENSG00000170482|Q9UHI7-3|SLC23A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.8031005859375	2	559.376426	1116.7383	0.40074	0.00022416	-0.43792	-0.00024496	-0.037178	-2.0797E-05	559.376253820613	37.401	0.65185	37.488	37.193	37.845	0.08741					32	23	2	0	0	0	0.25323	1	7705	7705		10.074	2.1638	1	321500			16463	6456	9331	9332	20771	20771					0.1846003795010347
IVKVEYEK	8	Unmodified	_IVKVEYEK_					0	0	0			REV__ENSG00000179002|ENST00000375371|TAS1R2	REV__ENSG00000179002|ENST00000375371|TAS1R2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2526550292969	2	504.292225	1006.5699	0.71613	0.00036114	0.53458	0.00026959	1.2507	0.00063072	504.2923903244385	36.751	0.32244	36.844	36.687	37.01	0.093014					15	11	2	0	0	0	0.32886	1	7465	7465		21.747	10.106	1	102800	+		16464	18055	9332	9333	20772	20772					0.0668751124579785
IVLALLRDA	9	Unmodified	_IVLALLRDA_					0	0	0			REV__nc|ENSG00000157343|Q5T9G4-3|ARMC12	REV__nc|ENSG00000157343|Q5T9G4-3|ARMC12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.3266906738281	2	492.316035	982.617516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.46	1	111.46	110.96	111.96	0								0	0	0	0.2575	1	28987	28987		3.9444	0	1		+		16465	16778	9333	9334	20773	20773					0.12551210236654242
IVLCLFYLK	9	Unmodified	_IVLCLFYLK_					0	0	0			REV__ENST00000396623.7_1_8:67380853-67381021:+|nuORF	REV__ENST00000396623.7_1_8:67380853-67381021:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2719116210938	2	556.332839	1110.65112	0.46916	0.00026101	-0.32622	-0.00018149	0.14294	7.9524E-05	556.3325137000706	29.748	0.25487	29.748	29.605	29.86	0					11	8	2	0	0	0	0.25938	1	5378	5378		4.3292	2.0265	1	64964	+		16466	20656	9334	9335	20774	20774					0.1002249568418847
IVLDVLVV	8	Unmodified	_IVLDVLVV_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2887268066406	2	435.288954	868.563355	0.11593	5.0462E-05	-0.95389	-0.00041522	-0.83797	-0.00036476	435.28865177171434	92.271	1.4523	92.272	91.636	93.089	0.00046539					197	101	3	0	0	0	0.26518	1	24541	24541		34.187	0	1	408160			16467	3408	9335	9336	20775	20775					0.12381618085100854
IVLNQDKNI	9	Unmodified	_IVLNQDKNI_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2818603515625	2	528.806031	1055.59751	0.6532	0.00034542	-0.83262	-0.0004403	-0.17942	-9.488E-05	528.8054915112818	54.118	0.68225	54.102	53.893	54.575	-0.015923					37	23	2	0	0	0	0.2451	1	12946	12946		10.824	0	1	232210	+		16468	17128	9336	9337	20776	20776					0.07193414506036788
IVLQSFGSHQ	10	Unmodified	_IVLQSFGSHQ_					0	0	0			REV__ENSG00000173285|ENST00000641535|OR10K1	REV__ENSG00000173285|ENST00000641535|OR10K1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2959594726562	2	558.29583	1114.57711	0.52851	0.00029506	0.030142	1.6828E-05	0.55865	0.00031189	558.2957387627167	36.134	1.2188	36.22	35.62	36.839	0.086246					108	43	4	0	0	0	0.28174	1	7206	7206		22.658	8.752	1	1680500	+		16469	17776	9337	9338	20777	20777					0.024402438462402642
IVLSAVITK	9	Unmodified	_IVLSAVITK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.3129577636719	2	472.312961	942.611368	0.21533	0.0001017	0.14958	7.0649E-05	0.36491	0.00017235	472.31287739449436	48.678	1.076	48.678	48.386	49.462	0					71	38	3	0	0	0	0.0045319	2	11181	11133;11181		90.135	36.302	1	2620000			16470	6752	9338	9339	20778;20779	20779					0.1377669200512628
IVLSAVITK	9	Unmodified	_IVLSAVITK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.3131103515625	2	472.312961	942.611368	0.40231	0.00019002	-0.01895	-8.9503E-06	0.38336	0.00018107	472.31282567339025	48.703	1.151	48.748	48.442	49.593	0.044888					77	41	3	0	0	0	0.0037449	2	11139	11139;11187		96.367	38.505	1	2500300			16471	6752	9338	9339	20780;20781	20780					0.1377669200512628
IVLSAVITK	9	Unmodified	_IVLSAVITK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.31292724609375	2	472.312961	942.611368	0.25451	0.00012021	0.12627	5.9641E-05	0.38078	0.00017985	472.31286279557855	48.696	1.1294	48.728	48.419	49.548	0.032043					79	40	3	0	0	0	0.0091837	2	11167	11114;11167		80.676	29.046	1	2614700			16472	6752	9338	9339	20782;20783	20783					0.1377669200512628
IVLVENFYK	9	Unmodified	_IVLVENFYK_					0	0	0		ENSG00000188643|ENST00000368706|S100A16;ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENSG00000188643|ENST00000368706|S100A16	ENSG00000188643|ENST00000368706|S100A16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8211669921875	2	562.82115	1123.62775	0.39856	0.00022432	-0.12842	-7.2278E-05	0.27013	0.00015204	562.8209725668111	58.174	0.92349	58.26	57.92	58.843	0.085621					89	32	4	0	0	0	0.04299	2	14072	14025;14072		55.503	23.465	1	1538700			16473	7763	9339	9340	20784;20785	20785					0.07087773171224399
IVLVENFYK	9	Unmodified	_IVLVENFYK_					0	0	0		ENSG00000188643|ENST00000368706|S100A16;ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENSG00000188643|ENST00000368706|S100A16	ENSG00000188643|ENST00000368706|S100A16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8211059570312	2	562.82115	1123.62775	0.63154	0.00035544	-0.46202	-0.00026004	0.16951	9.5407E-05	562.820817690193	58.333	1.127	58.318	57.931	59.058	-0.014267					89	40	4	0	0	0	0.04299	2	14149	14149;14203		55.503	17.731	1	2232500			16474	7763	9339	9340	20786;20787	20786					0.07087773171224399
IVLYMNGILK	10	Oxidation (M)	_IVLYM(Oxidation (M))NGILK_		IVLYM(1)NGILK		IVLYM(100)NGILK	0	0	1		nc|ENSG00000116815|P19256-3|CD58;ENSG00000116815|ENST00000369489|CD58	nc|ENSG00000116815|P19256-3|CD58	nc|ENSG00000116815|P19256-3|CD58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.3441162109375	2	590.343935	1178.67332	0.78881	0.00046567	-1.2323	-0.00072746	-0.44345	-0.00026179	590.3430777705105	54.84	0.64594	54.84	54.552	55.198	0					31	23	2	0	0	0	0.0036033	1	13054	13054		99.799	56.027	1	528900			16475	2754	9340	9341	20788	20788		349			0.09112675361939182
IVLYMNGILK	10	Oxidation (M)	_IVLYM(Oxidation (M))NGILK_		IVLYM(1)NGILK		IVLYM(110)NGILK	0	0	1		nc|ENSG00000116815|P19256-3|CD58;ENSG00000116815|ENST00000369489|CD58	nc|ENSG00000116815|P19256-3|CD58	nc|ENSG00000116815|P19256-3|CD58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.3441162109375	2	590.343935	1178.67332	0.67274	0.00039715	-0.90239	-0.00053272	-0.22965	-0.00013558	590.3431326965873	54.782	0.5386	54.845	54.642	55.181	0.063206					28	19	2	0	0	0	0.0023361	1	13031	13031		107.19	74.882	1	545990			16476	2754	9340	9341	20789	20789		349			0.09112675361939182
IVLYMNGILK	10	Oxidation (M)	_IVLYM(Oxidation (M))NGILK_					0	0	1		nc|ENSG00000116815|P19256-3|CD58;ENSG00000116815|ENST00000369489|CD58	nc|ENSG00000116815|P19256-3|CD58	nc|ENSG00000116815|P19256-3|CD58	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	590.343935	1178.67332	0.75695	0.00044686	-0.73586	-0.00043441	0.021087	1.2449E-05	590.3433790023945	54.931	0.37413	54.915	54.681	55.055	-0.015923	0.04817	8.9569E-05	NaN	107.19	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462560			16477	2754	9340	9341				349			0.09112675361939182
IVMFYYSK	8	Unmodified	_IVMFYYSK_					0	0	0			REV__Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|96|3|sense	REV__Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|96|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7786865234375	2	525.770071	1049.52559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.488	1	29.502	29.002	30.002	0.013474								0	0	0	0.34492	1	5277	5277		16.942	0.79319	1		+		16478	22707	9341	9342	20790	20790					0.0028078382797502854
IVNDFAYMK	9	Oxidation (M)	_IVNDFAYM(Oxidation (M))K_		IVNDFAYM(1)K		IVNDFAYM(91)K	0	0	1		ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENST00000534816.1_1_8:146220430-146220868:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.7733154296875	2	558.773342	1115.53213	0.67352	0.00037635	-1.0666	-0.00059597	-0.39304	-0.00021962	558.7729981768169	37.454	1.1449	37.454	37.124	38.269	0					124	40	5	0	0	0	0.0044119	1	7779	7779		91.085	25.611	1	2846100			16479	6446;11665	9342	9343	20791	20791		752			-0.021013230113112513
IVNDFAYMK	9	Oxidation (M)	_IVNDFAYM(Oxidation (M))K_		IVNDFAYM(1)K		IVNDFAYM(100)K	0	0	1		ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENST00000534816.1_1_8:146220430-146220868:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.7733154296875	2	558.773342	1115.53213	0.39925	0.00022309	-0.85389	-0.00047713	-0.45464	-0.00025404	558.7730852708809	37.398	1.3108	37.486	37.032	38.343	0.08741					155	47	5	0	0	0	0.0031966	2	7732	7732;7784		100.71	35.235	1	2847200			16480	6446;11665	9342	9343	20792;20793	20792		752			-0.021013230113112513
IVNDFAYMK	9	Oxidation (M)	_IVNDFAYM(Oxidation (M))K_		IVNDFAYM(1)K		IVNDFAYM(78)K	0	0	1		ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENSG00000170348|ENST00000303575|TMED10;ENST00000555036.1_1_14:75602424-75614456:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENST00000534816.1_1_8:146220430-146220868:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.7731323242188	2	558.773342	1115.53213	0.32422	0.00018116	-0.67577	-0.0003776	-0.35155	-0.00019644	558.7731896771411	37.336	1.247	37.429	36.951	38.198	0.093018					132	45	5	0	0	0	0.010888	1	7737	7737		78.06	20.811	1	3293800			16481	6446;11665	9342	9343	20794	20794		752			-0.021013230113112513
IVNEREVAF	9	Unmodified	_IVNEREVAF_					0	0	0			REV__ENSG00000096968|ENST00000381652|JAK2	REV__ENSG00000096968|ENST00000381652|JAK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2575073242188	2	538.790381	1075.56621	0.57325	0.00030886	-0.13162	-7.0914E-05	0.44164	0.00023795	538.7901420170436	48.875	0.49894	48.875	48.606	49.105	0					28	17	2	0	0	0	0.25526	1	11138	11138		7.9102	2.1497	1	432460	+		16482	14117	9343	9344	20795	20795					0.03144841471953441
IVNPTIVLL	9	Unmodified	_IVNPTIVLL_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-11|SORBS1;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;nc|ENSG00000095637|Q9BX66-3|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-4|SORBS1;nc|ENSG00000095637|Q9BX66-7|SORBS1;ENST00000474353.6_1_10:97106208-97250794:-|nuORF	nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7947082519531	2	491.320786	980.627018	0.32867	0.00016148	0.10452	5.1353E-05	0.43319	0.00021283	491.3207689120056	81.658	0.6761	81.658	81.434	82.11	0					46	26	2	0	0	0	0.15943	1	21275	21275		39.95	10.868	1	244710			16483	12607	9344	9345	20796	20796					0.1359297852217196
IVNQLNALSSL	11	Unmodified	_IVNQLNALSSL_					0	0	0		nc|ENSG00000115504|Q8NDI1|EHBP1	nc|ENSG00000115504|Q8NDI1|EHBP1	nc|ENSG00000115504|Q8NDI1|EHBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3591918945312	2	586.337695	1170.66084	0.17778	0.00010424	-0.0023478	-1.3766E-06	0.17543	0.00010286	586.3378219772993	67.038	1.4079	67.021	66.377	67.785	-0.016228					125	49	4	0	0	0	0.32905	1	16621	16621		6.6304	3.0433	1	1799000			16484	12662	9345	9346	20797	20797					0.08233355223296712
IVPEKKTLV	9	Unmodified	_IVPEKKTLV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.80908203125	2	513.831517	1025.64848	0.32036	0.00016461	0.34591	0.00017774	0.66627	0.00034235	513.8312998768706	43.076	0.34958	43.161	42.922	43.271	0.085197					19	12	2	0	0	0	0.24311	1	9369	9369		11.64	8.0438	1	166360			16485	5186	9346	9347	20798	20798					0.13668363550891627
IVPEPVQFP	9	Unmodified	_IVPEPVQFP_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.80908203125	2	513.286943	1024.55933	0.058487	3.0021E-05	0.58888	0.00030226	0.64737	0.00033229	513.2848062799212	43.02	0.080315	43.111	43.043	43.123	0.091362					4	2	2	0	0	0	0.24311	1	9390	9390		7.2892	3.6927	1	44893			16486	1848	9347	9348	20799	20799					0.04803528591378381
IVPETQVL	8	Unmodified	_IVPETQVL_					0	0	0		nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.765869140625	2	449.765843	897.517133	0.27434	0.00012339	0.38761	0.00017433	0.66195	0.00029772	449.76567259694076	63.366	1.5965	63.366	62.292	63.889	0					108	58	3	0	0	0	0.11736	2	15675	15675;15731		57.471	3.9388	1	1314500			16487	4681	9348	9349	20800;20801	20800					0.06427553183004875
IVPETQVL	8	Unmodified	_IVPETQVL_					0	0	0		nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.7657165527344	2	449.765843	897.517133	0.27577	0.00012403	0.36175	0.0001627	0.63752	0.00028674	449.7656489419325	63.298	0.97306	63.394	63.042	64.015	0.095726					94	34	4	0	0	0	0.11736	2	15635	15635;15686		57.471	3.9388	1	1239500			16488	4681	9348	9349	20802;20803	20802					0.06427553183004875
IVPETQVL	8	Unmodified	_IVPETQVL_					0	0	0		nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.7657470703125	2	449.765843	897.517133	0.32702	0.00014708	0.67194	0.00030221	0.99895	0.00044929	449.7656457061107	63.367	1.2964	63.358	62.994	64.29	-0.0085564					116	46	4	0	0	0	0.11736	2	15650	15650;15701		57.471	2.6978	1	1311700			16489	4681	9348	9349	20804;20805	20804					0.06427553183004875
IVPMKQDY	8	Unmodified	_IVPMKQDY_					0	0	0			REV__ENSG00000088179|ENST00000263708|PTPN4	REV__ENSG00000088179|ENST00000263708|PTPN4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2671203613281	2	497.257328	992.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.386	1	37.479	36.979	37.979	0.093018								0	0	0	0.35251	1	7685	7685		13.508	0.97634	1		+		16490	14000	9349	9350	20806	20806					0.00355309305530227
IVQASVSLK	9	Unmodified	_IVQASVSLK_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.79241943359375	2	472.792392	943.570232	0.13062	6.1758E-05	0.29207	0.00013809	0.42269	0.00019985	472.792336028186	34.191	0.50258	34.191	33.997	34.5	0					39	17	3	0	0	0	0.033439	1	6716	6716		59.052	19.103	1	462840			16491	1819	9350	9351	20807	20807					0.09618930965655181
IVQASVSLK	9	Unmodified	_IVQASVSLK_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.79248046875	2	472.792392	943.570232	0.2969	0.00014037	0.038253	1.8086E-05	0.33515	0.00015846	472.7922426565524	34.071	0.69127	34.138	33.904	34.595	0.06636					51	24	3	0	0	0	0.033439	1	6676	6676		59.052	19.103	1	538540			16492	1819	9350	9351	20808	20808					0.09618930965655181
IVQASVSLK	9	Unmodified	_IVQASVSLK_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.79248046875	2	472.792392	943.570232	0.09697	4.5847E-05	0.12718	6.0129E-05	0.22415	0.00010598	472.7923372249883	34.038	0.61509	34.105	33.879	34.495	0.066704					45	21	3	0	0	0	0.043711	1	6671	6671		55.235	13.395	1	534040			16493	1819	9350	9351	20809	20809					0.09618930965655181
IVQETSFEK	9	Unmodified	_IVQETSFEK_					0	0	0		ENSG00000198203|ENST00000251481|SULT1C2;nc|ENSG00000198203|O00338-2|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7822265625	2	540.782222	1079.54989	0.61449	0.00033231	-0.12913	-6.9829E-05	0.48537	0.00026248	540.7820733627792	29.831	0.50754	29.831	29.659	30.167	0					39	17	3	0	0	0	0.05849	1	5375	5375		49.742	19.517	1	370950			16494	8050	9351	9352	20810	20810					0.013297155151803963
IVQETSFEK	9	Unmodified	_IVQETSFEK_					0	0	0		ENSG00000198203|ENST00000251481|SULT1C2;nc|ENSG00000198203|O00338-2|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7823486328125	2	540.782222	1079.54989	0.53387	0.00028871	-0.63062	-0.00034103	-0.096755	-5.2323E-05	540.782098883453	29.802	0.67252	29.815	29.5	30.173	0.012266					46	22	3	0	0	0	0.038672	1	5364	5364		57.108	22.706	1	345060			16495	8050	9351	9352	20811	20811					0.013297155151803963
IVQETSFEK	9	Unmodified	_IVQETSFEK_					0	0	0		ENSG00000198203|ENST00000251481|SULT1C2;nc|ENSG00000198203|O00338-2|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7823486328125	2	540.782222	1079.54989	0.292	0.00015791	-0.77215	-0.00041757	-0.48016	-0.00025966	540.7820700437957	29.803	0.50155	29.816	29.594	30.095	0.013475					36	16	3	0	0	0	0.02847	1	5370	5370		60.899	26.498	1	395390			16496	8050	9351	9352	20812	20812					0.013297155151803963
IVQGNAGSDRD	11	Unmodified	_IVQGNAGSDRD_					0	0	0			REV__nc|ENSG00000251664|Q9UN75-2|PCDHA12	REV__nc|ENSG00000251664|Q9UN75-2|PCDHA12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7978515625	2	566.273084	1130.53161	0.35364	0.00020026	-0.0068178	-3.8607E-06	0.34683	0.0001964	566.2730232915278	65.581	1.3142	65.569	65.148	66.462	-0.01133					63	47	2	0	0	0	0.32667	1	16619	16619		8.7454	5.7502	1	396460	+		16497	19223	9352	9353	20813	20813					-0.02843026406799254
IVQNGRLIV	9	Unmodified	_IVQNGRLIV_					0	0	0		ENSG00000063978|ENST00000314289|RNF4	ENSG00000063978|ENST00000314289|RNF4	ENSG00000063978|ENST00000314289|RNF4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.3028259277344	2	506.319109	1010.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.42	1	40.513	40.013	41.013	0.09267								0	0	0	0.18374	1	8619	8619		26.884	2.8631	1				16498	781	9353	9354	20814	20814					0.11877728468186888
IVQVSPKIVEI	11	Unmodified	_IVQVSPKIVEI_					0	0	0		nc|ENSG00000182667|Q9P121-3|NTM;nc|ENSG00000182667|Q9P121|NTM;nc|ENSG00000182667|Q9P121-2|NTM;nc|ENSG00000182667|Q9P121-4|NTM;ENSG00000182667|ENST00000683400|NTM	nc|ENSG00000182667|Q9P121-3|NTM	nc|ENSG00000182667|Q9P121-3|NTM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.5887451171875	3	408.923585	1223.74892	-0.41215	-0.00016854	-0.33529	-0.00013711	-0.74744	-0.00030565	408.92339798250447	39.353	0.69585	39.353	39.135	39.831	0					40	25	2	0	0	0	0.32951	1	8334	8334		7.846	3.4399	1	289350			16499	7308	9354	9355	20815	20815					0.14599975813894162
IVRDGRQL	8	Unmodified	_IVRDGRQL_					0	0	0			REV__ACSM3|p.K363Nfs*21|1|0.33|ENSG00000005187|chr16:20785049-20785049|A/-|frameshift_variant	REV__ACSM3|p.K363Nfs*21|1|0.33|ENSG00000005187|chr16:20785049-20785049|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7369689941406	2	478.785433	955.556313	0.38853	0.00018602	-0.78912	-0.00037782	-0.40059	-0.00019179	478.78513324764936	79.583	0.87558	79.554	79.128	80.004	-0.028923					55	33	2	0	0	0	0.34185	1	20593	20593		10.183	4.9527	1	287580	+		16500	13075	9355	9356	20816	20816					0.07675698257230579
IVRFASGPV	9	Unmodified	_IVRFASGPV_					0	0	0		ENST00000349223.9_1_16:68262149-68262320:+|nuORF	ENST00000349223.9_1_16:68262149-68262320:+|nuORF	ENST00000349223.9_1_16:68262149-68262320:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.27935791015625	2	473.279452	944.544351	0.60765	0.00028759	0.4776	0.00022604	1.0853	0.00051363	473.27914770713744	48.036	0.68737	48.084	47.945	48.632	0.047523					47	25	3	0	0	0	0.15219	1	10966	10966		30.637	0.41173	1	1603300			16501	9572	9356	9357	20817	20817					0.06986081514037323
IVRFASGPV	9	Unmodified	_IVRFASGPV_					0	0	0		ENST00000349223.9_1_16:68262149-68262320:+|nuORF	ENST00000349223.9_1_16:68262149-68262320:+|nuORF	ENST00000349223.9_1_16:68262149-68262320:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.2791442871094	2	473.279452	944.544351	0.46307	0.00021916	0.60079	0.00028434	1.0639	0.0005035	473.27914726801623	48.071	0.68548	48.114	47.902	48.588	0.043324					42	25	3	0	0	0	0.19747	1	10957	10957		24.021	0.87215	1	1386200			16502	9572	9356	9357	20818	20818					0.06986081514037323
IVRFHPAK	8	Unmodified	_IVRFHPAK_					0	0	0		ENST00000326195.12_1_6:30558692-30558890:+|nuORF	ENST00000326195.12_1_6:30558692-30558890:+|nuORF	ENST00000326195.12_1_6:30558692-30558890:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.6683044433594	2	484.295436	966.57632	0.0893	4.3248E-05	-1.0028	-0.00048567	-0.91353	-0.00044242	484.2947768281011	35.534	1.3015	35.62	35.15	36.451	0.08625					56	46	2	0	0	0	0.33245	1	6994	6994		19.439	1.2926	1	224340			16503	9412	9357	9358	20819	20819					0.09169493987837996
IVRGQTAESL	10	Unmodified	_IVRGQTAESL_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7802734375	2	537.301113	1072.58767	0.14388	7.7308E-05	0.054276	2.9163E-05	0.19816	0.00010647	537.3011696392015	27.9	0.48017	27.9	27.7	28.181	0					26	16	2	0	0	0	0.31364	1	4786	4786		15.739	3.498	1	172430			16504	5933	9358	9359	20820	20820					0.05428226500657729
IVRGQTAESL	10	Unmodified	_IVRGQTAESL_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.780517578125	2	537.301113	1072.58767	0.03227	1.7339E-05	-0.45087	-0.00024225	-0.4186	-0.00022491	537.3009136508455	27.89	0.6213	27.886	27.684	28.306	-0.0042572					30	21	2	0	0	0	0.27655	1	4794	4794		30.703	17.661	1	200480			16505	5933	9358	9359	20821	20821					0.05428226500657729
IVRGQTAESL	10	Unmodified	_IVRGQTAESL_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7803344726562	2	537.301113	1072.58767	0.064218	3.4504E-05	0.047688	2.5623E-05	0.11191	6.0127E-05	537.3010829028976	27.815	0.47106	27.807	27.679	28.15	-0.0077629					27	16	2	0	0	0	0.26647	1	4787	4787		34.222	21.179	1	198030			16506	5933	9358	9359	20822	20822					0.05428226500657729
IVRGVYINPVH	11	Unmodified	_IVRGVYINPVH_					0	0	0			REV__ENST00000447263.1_1_1:39980824-39982159:+|nuORF	REV__ENST00000447263.1_1_1:39980824-39982159:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3535766601562	2	633.869497	1265.72444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.391	1	12.323	11.823	12.823	-0.06806								0	0	0	0.38114	1	112	112		1.3295	0.80477	1		+		16507	21088	9359	9360	20823	20823					0.10220760451034039
IVRKLVTAL	9	Unmodified	_IVRKLVTAL_					0	0	0		nc|ENSG00000176994|Q8TEV9-2|SMCR8;ENSG00000176994|ENST00000406438|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.84747314453125	2	506.847502	1011.68045	0.4887	0.00024769	-0.36245	-0.0001837	0.12625	6.399E-05	506.84724188557243	37.778	1.0907	37.778	37.532	38.623	0					78	38	4	0	0	0	0.041175	1	7826	7826		56.177	20.05	1	1013600			16508	6956	9360	9361	20824	20824					0.17507776024683608
IVRKLVTAL	9	Unmodified	_IVRKLVTAL_					0	0	0		nc|ENSG00000176994|Q8TEV9-2|SMCR8;ENSG00000176994|ENST00000406438|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.84765625	2	506.847502	1011.68045	0.35403	0.00017944	-0.2547	-0.0001291	0.099323	5.0342E-05	506.8472896989652	37.751	0.95927	37.841	37.609	38.568	0.090881					78	34	3	0	0	0	0.063853	1	7814	7814		47.749	18.667	1	920960			16509	6956	9360	9361	20825	20825					0.17507776024683608
IVRKLVTAL	9	Unmodified	_IVRKLVTAL_					0	0	0		nc|ENSG00000176994|Q8TEV9-2|SMCR8;ENSG00000176994|ENST00000406438|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.8475341796875	2	506.847502	1011.68045	0.27614	0.00013996	-0.13825	-7.007E-05	0.1379	6.9892E-05	506.84733673404975	37.673	1.1209	37.77	37.529	38.65	0.097527					87	40	3	0	0	0	0.05341	1	7798	7798		51.63	18.844	1	894690			16510	6956	9360	9361	20826	20826					0.17507776024683608
IVRLQQLLV	9	Unmodified	_IVRLQQLLV_					0	0	0		ENST00000392396.7_2_3:195796375-195798346:-|nuORF	ENST00000392396.7_2_3:195796375-195798346:-|nuORF	ENST00000392396.7_2_3:195796375-195798346:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7774658203125	2	541.358234	1080.70191	0.35209	0.0001906	-0.21944	-0.0001188	0.13264	7.1807E-05	541.3579015890982	26.348	0.54043	26.348	26.133	26.673	0					38	18	3	0	0	0	0.25526	1	4333	4333		7.9102	0	1	203170			16511	10032	9361	9362	20827	20827					0.1647916105339391
IVSAVRRSS	9	Unmodified	_IVSAVRRSS_					0	0	0		nc|ENSG00000155792|Q8TB45-2|DEPTOR;ENSG00000155792|ENST00000286234|DEPTOR	nc|ENSG00000155792|Q8TB45-2|DEPTOR	nc|ENSG00000155792|Q8TB45-2|DEPTOR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7913818359375	2	487.790715	973.566878	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.233	1	75.201	74.701	75.701	-0.031487								0	0	0	0.22933	1	19306	19306		13.042	1.4022	1				16512	5196	9362	9363	20828	20828					0.07903680911658739
IVSCSTSIK	9	Unmodified	_IVSCSTSIK_					0	0	0			REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7869567871094	2	469.254785	936.495018	-0.046815	-2.1968E-05	-0.59048	-0.00027709	-0.6373	-0.00029905	469.2544337003669	28.537	0.48375	28.537	28.322	28.805	0.0004673					18	16	2	0	0	0	0.25526	1	4931	4931		7.9102	1.5561	1	64741	+		16513	14284	9363	9364	20829	20829					0.02423005442926751
IVSCSTSIK	9	Unmodified	_IVSCSTSIK_					0	0	0			REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	469.254785	936.495018	-0.1145	-5.3728E-05	-0.63863	-0.00029968	-0.75312	-0.00035341	469.2543718324319	28.613	0.33973	28.613	28.389	28.729	0	0.053292	-7.3972E-05	NaN	7.9102	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75663	+		16514	14284	9363	9364							0.02423005442926751
IVSDFTIGR	9	Unmodified	_IVSDFTIGR_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.28009033203125	2	504.279649	1006.54475	0.40803	0.00020576	0.33164	0.00016724	0.73966	0.000373	504.2797755471048	46.025	0.90174	46.025	45.501	46.402	0					49	32	2	0	0	0	0.00051734	1	10323	10323		128.93	67.575	1	1384100			16515	2325	9364	9365	20830	20830					0.04173456443231771
IVSDFTIGR	9	Unmodified	_IVSDFTIGR_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.28009033203125	2	504.279649	1006.54475	0.12798	6.4539E-05	0.51536	0.00025988	0.64334	0.00032442	504.27984870425604	45.919	1.0829	45.978	45.282	46.365	0.059837					53	38	2	0	0	0	0.001957	1	10278	10278		110.55	64.532	1	1297900			16516	2325	9364	9365	20831	20831					0.04173456443231771
IVSDFTIGR	9	Unmodified	_IVSDFTIGR_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2799377441406	2	504.279649	1006.54475	0.48034	0.00024223	0.13367	6.7405E-05	0.61401	0.00030963	504.2796444902616	45.891	0.97861	45.956	45.33	46.309	0.065048					51	35	2	0	0	0	0.0010968	2	10277	10277;10330		121.53	71.601	1	1275400			16517	2325	9364	9365	20832;20833	20832					0.04173456443231771
IVSKLWPTF	9	Unmodified	_IVSKLWPTF_					0	0	0		ENSG00000198074|ENST00000359579|AKR1B10	ENSG00000198074|ENST00000359579|AKR1B10	ENSG00000198074|ENST00000359579|AKR1B10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.82958984375	2	545.81841	1089.62227	0.42216	0.00023042	-2.4922	-0.0013603	-2.07	-0.0011299	545.8170407634198	67.195	0.73535	67.195	66.825	67.561	0					43	25	2	0	0	0	0.24311	1	16930	16930		11.64	0.14559	1	451240			16518	8034	9365	9366	20834	20834					0.08104094379405069
IVSQVKVPK	9	Unmodified	_IVSQVKVPK_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.3238830566406	2	499.32386	996.633166	0.22861	0.00011415	-0.24367	-0.00012167	-0.015062	-7.5209E-06	499.32380718533994	25.64	0.38537	25.64	25.413	25.798	0					23	12	3	0	0	0	0.073988	1	4127	4127		43.982	17.714	1	177640			16519	3533	9366	9367	20835	20835					0.1347149675370929
IVSQVKVPK	9	Unmodified	_IVSQVKVPK_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7234191894531	2	499.32386	996.633166	0.083967	4.1927E-05	0.032792	1.6374E-05	0.11676	5.8301E-05	499.3239193590233	25.661	0.45142	25.639	25.416	25.867	-0.022238					32	15	3	0	0	0	0.22701	1	4153	4153		23.79	6.6769	1	181200			16520	3533	9366	9367	20836	20836					0.1347149675370929
IVSQVKVPK	9	Unmodified	_IVSQVKVPK_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	499.32386	996.633166	0.073424	3.6663E-05	0.13563	6.7725E-05	0.20906	0.00010439	499.32389411620403	25.644	0.3708	25.588	25.395	25.766	-0.055931	-0.034348	0.00016649	NaN	43.982	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202190			16521	3533	9366	9367							0.1347149675370929
IVSTYGVR	8	Unmodified	_IVSTYGVR_					0	0	0		ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7	ENSG00000166164|ENST00000394688|BRD7	ENSG00000166164|ENST00000394688|BRD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2845764160156	2	447.75581	893.497067	0.52971	0.00023718	-1.8463	-0.00082669	-1.3166	-0.00058951	447.75561808269003	45.909	0.84571	45.909	45.452	46.298	0					35	30	2	0	0	0	0.33245	1	10420	10420		13.508	0	1	205970			16522	6036	9367	9368	20837	20837					0.04605802243054313
IVTERVIAP	9	Unmodified	_IVTERVIAP_					0	0	0		nc|ENSG00000134760|Q02413-2|DSG1;ENSG00000134760|ENST00000257192|DSG1	nc|ENSG00000134760|Q02413-2|DSG1	nc|ENSG00000134760|Q02413-2|DSG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2896423339844	2	499.305667	996.596781	0.43143	0.00021541	-0.27356	-0.00013659	0.15787	7.8824E-05	499.3054396765582	62.93	0.6222	63.026	62.794	63.416	0.095726					38	22	2	0	0	0	0.22596	1	15496	15496		15.847	0	1	206880			16523	3808	9368	9369	20838	20838					0.09834619856985682
IVTGVQVSSR	10	Unmodified	_IVTGVQVSSR_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3035888671875	2	523.303655	1044.59276	0.45311	0.00023711	-0.3878	-0.00020293	0.065315	3.418E-05	523.303309180788	76.326	1.9064	76.326	75.649	77.555	0					243	69	5	0	0	0	0.36368	1	19467	19467		10.151	3.9448	1	3322100			16524	6018	9369	9370	20839	20839					0.07224530363282611
IVTGVQVSSR	10	Unmodified	_IVTGVQVSSR_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3035888671875	2	523.303655	1044.59276	0.40746	0.00021322	0.63294	0.00033122	1.0404	0.00054444	523.3035630147534	76.049	1.1371	76.102	75.052	76.189	0.053413					140	41	5	0	0	0	0.36368	2	19326	19326;19372		10.151	2.2404	1	2005200			16525	6018	9369	9370	20840;20841	20840					0.07224530363282611
IVTGVQVSSR	10	Unmodified	_IVTGVQVSSR_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3037109375	2	523.303655	1044.59276	0.61163	0.00032007	-0.42161	-0.00022063	0.19001	9.9435E-05	523.3032721893725	76.409	2.54	76.378	75.059	77.599	-0.031487					355	93	5	0	0	0	0.36368	2	19358	19358;19407		10.151	4.5289	1	3309700			16526	6018	9369	9370	20842;20843	20842					0.07224530363282611
IVTKKSTNVII	11	Unmodified	_IVTKKSTNVII_					0	0	0			REV__nc|ENSG00000198176|Q14186-2|TFDP1	REV__nc|ENSG00000198176|Q14186-2|TFDP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8340454101562	2	608.387188	1214.75982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.044	1	74.044	73.544	74.544	0								0	0	0	0.36517	1	18954	18954		4.897	2.3985	1		+		16527	18807	9370	9371	20844	20844					0.16103378188199713
IVTKYPARK	9	Unmodified	_IVTKYPARK_					0	0	0			REV__ENSG00000067704|ENST00000366922|IARS2	REV__ENSG00000067704|ENST00000366922|IARS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8033447265625	2	538.334759	1074.65496	0.35191	0.00018945	-0.42439	-0.00022847	-0.072479	-3.9018E-05	538.334340509052	53.499	0.38731	53.555	53.353	53.74	0.056259					21	14	2	0	0	0	0.25526	1	12593	12593		7.9102	6.4283	1	218750	+		16528	13693	9371	9372	20845	20845					0.12062301502260198
IVTNTHCWSF	10	Unmodified	_IVTNTHCWSF_					0	0	0			REV__Harlequin-int_dup273|chr7:135172192-135172846:+|1.0001858604204727|0.1424182930396835|2.81|542.0|31|2|anti-sense	REV__Harlequin-int_dup273|chr7:135172192-135172846:+|1.0001858604204727|0.1424182930396835|2.81|542.0|31|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.560791015625	3	403.190336	1206.54918	-0.27832	-0.00011221	2.5758	0.0010385	2.2975	0.00092631	403.19169268302966	23.504	0.71284	23.504	23.145	23.857	0					46	24	3	0	0	0	0.318	1	3418	3418		3.8763	0.80407	1	54244	+		16529	22711	9372	9373	20846	20846					-0.04583402405523884
IVTRQKLV	8	Unmodified	_IVTRQKLV_					0	0	0			REV__ENST00000371394.6_1_9:140611085-140686569:+|nuORF	REV__ENST00000371394.6_1_9:140611085-140686569:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.214111328125	2	478.816202	955.617851	-0.15565	-7.4525E-05	-0.41836	-0.00020032	-0.574	-0.00027484	478.81379522738735	59.886	0.15757	59.886	59.819	59.977	0					6	5	2	0	0	0	0.34185	1	14629	14629		10.183	0.83596	1	68404	+		16530	20397	9373	9374	20847	20847					0.13826629956520264
IVVCFVYLW	9	Unmodified	_IVVCFVYLW_					0	0	0		ABCC6|p.R987Lfs*25|1|0.2|ENSG00000091262|chr16:16169681-16169681|C/-|frameshift_variant;ABCC6|p.R1418Gfs*46|1|0.12|ENSG00000091262|chr16:16150729-16150729|G/-|frameshift_variant;ENSG00000091262|ENST00000205557|ABCC6;ENST00000574094.5_1_16:16275679-16317348:-|nuORF;nc|ENSG00000091262|O95255-3|ABCC6	ABCC6|p.R987Lfs*25|1|0.2|ENSG00000091262|chr16:16169681-16169681|C/-|frameshift_variant	ABCC6|p.R987Lfs*25|1|0.2|ENSG00000091262|chr16:16169681-16169681|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.309326171875	2	571.309364	1140.60417	0.078398	4.4789E-05	-0.69287	-0.00039584	-0.61447	-0.00035106	571.3089541682265	27.546	0.96202	27.524	27.188	28.15	-0.021412					87	33	4	0	0	0	0.2616	1	4755	4755		14.582	0.96682	1	740640			16531	2	9374	9375	20848	20848					0.03949636133052081
IVVEHIIMK	9	Oxidation (M)	_IVVEHIIM(Oxidation (M))K_		IVVEHIIM(1)K		IVVEHIIM(89)K	0	0	1		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3232421875	2	549.323002	1096.63145	0.25414	0.00013961	-0.043667	-2.3987E-05	0.21048	0.00011562	549.3232239562315	35.479	1.1127	35.479	35.17	36.282	0					112	40	4	0	0	0	0.0046246	4	7105	7057;7105;7156;7207		89.401	60.914	1	2615300			16532	2239	9375	9376	20849;20850;20851;20852	20850		277			0.08700119673426343
IVVEHIIMK	9	Oxidation (M)	_IVVEHIIM(Oxidation (M))K_		IVVEHIIM(1)K		IVVEHIIM(89)K	0	0	1		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3231811523438	2	549.323002	1096.63145	0.25793	0.00014169	-0.40185	-0.00022074	-0.14391	-7.9056E-05	549.323138492898	35.345	1.0133	35.42	35.123	36.136	0.075306					100	36	4	0	0	0	0.0046246	3	7077	7029;7077;7127		89.401	56.615	1	2221400			16533	2239	9375	9376	20853;20854;20855	20854		277			0.08700119673426343
IVVEHIIMK	9	Oxidation (M)	_IVVEHIIM(Oxidation (M))K_		IVVEHIIM(1)K		IVVEHIIM(89)K	0	0	1		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3228759765625	2	549.323002	1096.63145	-0.074136	-4.0725E-05	0.049692	2.7297E-05	-0.024444	-1.3428E-05	549.3233510945573	35.338	0.99075	35.415	35.141	36.131	0.077377					107	35	5	0	0	0	0.0046246	3	7019	7019;7066;7118		89.401	53.357	1	2558800			16534	2239	9375	9376	20856;20857;20858	20856		277			0.08700119673426343
IVVIPENGSVV	11	Unmodified	_IVVIPENGSVV_					0	0	0		ENST00000561773.1_1_15:66671752-66672088:-|nuORF	ENST00000561773.1_1_15:66671752-66672088:-|nuORF	ENST00000561773.1_1_15:66671752-66672088:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.7824096679688	2	563.329339	1124.64412	0.64952	0.00036589	-0.019713	-1.1105E-05	0.62981	0.00035479	563.329394453562	54.55	0.45343	54.613	54.41	54.863	0.063202					37	16	3	0	0	0	0.32367	1	13039	13039		18.373	1.2602	1	579080			16535	11914	9376	9377	20859	20859					0.08678854337335906
IVVKEVFNRLL	11	Unmodified	_IVVKEVFNRLL_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	444.2411193847656	3	443.946612	1328.81801	0.25779	0.00011444	-0.55113	-0.00024467	-0.29334	-0.00013023	444.28077264345416	51.133	0.47146	51.18	50.957	51.429	0.046574					29	17	2	0	0	0	0.33296	1	11929	11929		2.6312	1.1761	1	360540			16536	3229	9377	9378	20860	20860					0.1667505983348292
IVVKEVFNRLL	11	Unmodified	_IVVKEVFNRLL_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	443.946612	1328.81801	0.47742	0.00021195	-0.75165	-0.00033369	-0.27423	-0.00012175	443.9463793285194	51.188	0.43359	51.188	50.949	51.382	0	0.0041228	-0.00013695	NaN	2.6312	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260350			16537	3229	9377	9378							0.1667505983348292
IVVNLTGSL	9	Unmodified	_IVVNLTGSL_					0	0	0		ENST00000435088.1_1_10:71060267-71060456:-|nuORF	ENST00000435088.1_1_10:71060267-71060456:-|nuORF	ENST00000435088.1_1_10:71060267-71060456:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7870178222656	2	458.279118	914.543683	0.15953	7.3108E-05	0.0073728	3.3788E-06	0.1669	7.6487E-05	458.2790751370796	39.706	0.59229	39.799	39.497	40.09	0.09267					45	20	3	0	0	0	0.040595	1	8419	8419		74.929	16.25	1	507840			16538	10506	9378	9379	20861	20861					0.08299242074315316
IVVPFPLL	8	Unmodified	_IVVPFPLL_					0	0	0		ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.6241455078125	2	449.29404	896.573526	-0.022483	-1.0102E-05	0.053286	2.3941E-05	0.030803	1.3839E-05	449.2939452363981	98.387	0.6128	98.448	98.198	98.811	0.061516					116	71	2	0	0	0	0.33618	1	26402	26402		11.114	11.114	1	349640			16539	6867	9379	9380	20862	20862					0.12110225810317843
IVVPFPLL	8	Unmodified	_IVVPFPLL_					0	0	0		ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.6241149902344	2	449.29404	896.573526	0.19648	8.8277E-05	-0.13793	-6.1972E-05	0.058548	2.6305E-05	449.29384015154494	98.543	0.58064	98.536	98.318	98.899	-0.0068283					110	65	2	0	0	0	0.33618	1	26498	26498		6.3541	3.4649	1	328680			16540	6867	9379	9380	20863	20863					0.12110225810317843
IVVPFPLL	8	Unmodified	_IVVPFPLL_					0	0	0		ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	449.29404	896.573526	-0.15408	-6.9225E-05	0.06175	2.7744E-05	-0.092326	-4.1481E-05	449.29398093307725	98.57	0.57324	98.57	98.294	98.867	0	0.051884	5.1219E-05	NaN	11.114	106	65	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176120			16541	6867	9379	9380							0.12110225810317843
IVVPKAAIVAR	11	Unmodified	_IVVPKAAIVAR_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.8795166015625	2	568.879333	1135.74411	0.27659	0.00015734	0.086951	4.9465E-05	0.36354	0.00020681	568.8793215472932	40.177	0.77325	40.177	39.803	40.576	0					71	27	4	0	0	0	0.011984	1	8557	8557		65.474	41.453	1	1336300			16542	8673	9380	9381	20864	20864					0.18167136461761402
IVVPKAAIVAR	11	Unmodified	_IVVPKAAIVAR_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.87939453125	2	568.879333	1135.74411	0.60567	0.00034455	-0.26566	-0.00015113	0.34001	0.00019342	568.8791312657773	40.122	0.75539	40.215	39.83	40.585	0.09267					64	26	4	0	0	0	0.011984	1	8516	8516		65.474	47.327	1	1455600			16543	8673	9380	9381	20865	20865					0.18167136461761402
IVVPKAAIVAR	11	Unmodified	_IVVPKAAIVAR_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.87939453125	2	568.879333	1135.74411	0.35043	0.00019935	0.064797	3.6861E-05	0.41523	0.00023622	568.8792903847204	40.019	0.79723	40.118	39.844	40.641	0.099407					69	28	4	0	0	0	0.036142	2	8489	8489;8544		57.249	39.103	1	1291000			16544	8673	9380	9381	20866;20867	20866					0.18167136461761402
IVVPPLPEK	9	Unmodified	_IVVPPLPEK_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.3131103515625	2	496.312961	990.611368	0.50818	0.00025222	-0.39001	-0.00019357	0.11817	5.8649E-05	496.31265294862834	49.499	0.73368	49.499	49.243	49.976	0					62	26	3	0	0	0	0.24467	1	11416	11416		17.113	2.2746	1	741260			16545	2572	9381	9382	20868	20868					0.11568692005130288
IVVPPLPEK	9	Unmodified	_IVVPPLPEK_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3130798339844	2	496.312961	990.611368	0.37432	0.00018578	-0.29248	-0.00014516	0.081845	4.0621E-05	496.31266083325056	49.548	0.66349	49.593	49.293	49.957	0.044891					62	24	3	0	0	0	0.16283	1	11423	11423		29.082	8.628	1	848540			16546	2572	9381	9382	20869	20869					0.11568692005130288
IVVPPLPEK	9	Unmodified	_IVVPPLPEK_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3131408691406	2	496.312961	990.611368	0.27998	0.00013896	-0.20005	-9.9285E-05	0.07993	3.967E-05	496.3127415985792	49.499	0.83503	49.531	49.24	50.075	0.032043					64	30	3	0	0	0	0.18208	1	11410	11410		26.268	5.8145	1	785280			16547	2572	9381	9382	20870	20870					0.11568692005130288
IVVSLRFPIPK	11	Unmodified	_IVVSLRFPIPK_					0	0	0		nc|ENSG00000167528|Q96N77-2|ZNF641;ENSG00000167528|ENST00000547026|ZNF641;nc|ENSG00000167528|Q96N77|ZNF641	nc|ENSG00000167528|Q96N77-2|ZNF641	nc|ENSG00000167528|Q96N77-2|ZNF641	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3775024414062	2	634.908091	1267.80163	0.2575	0.00016349	0.90548	0.0005749	1.163	0.00073839	634.9092203473162	103.05	0.21861	103.05	102.89	103.11	0.0082703					43	29	3	0	0	0	0.33318	1	27383	27383		0.30703	0	1	7270000			16548	6184	9382	9383	20871	20871					0.17843978667360716
IVVTAVAYSF	10	Unmodified	_IVVTAVAYSF_					0	0	0		ENSG00000166292|ENST00000424486|TMEM100	ENSG00000166292|ENST00000424486|TMEM100	ENSG00000166292|ENST00000424486|TMEM100	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7393188476562	2	535.30005	1068.58555	0.2908	0.00015566	-0.31363	-0.00016789	-0.022834	-1.2223E-05	535.2998883985912	61.446	0.34276	61.446	61.254	61.597	0					22	12	2	0	0	0	0.2291	1	15145	15145		39.957	1.9833	1	372240			16549	6058	9383	9384	20872	20872					0.05399797762856906
IVVTLYKKS	9	Unmodified	_IVVTLYKKS_					0	0	0		nc|ENSG00000143147|Q8N6U8-2|GPR161;ENST00000493800.1_1_1:168059784-168074118:-|nuORF;ENSG00000143147|ENST00000682931|GPR161;nc|ENSG00000143147|Q8N6U8-6|GPR161	nc|ENSG00000143147|Q8N6U8-2|GPR161	nc|ENSG00000143147|Q8N6U8-2|GPR161	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7786254882812	2	525.831517	1049.64848	0.50157	0.00026374	-2.7816	-0.0014627	-2.28	-0.0011989	525.8299681049474	29.594	0.52815	29.606	29.389	29.917	0.012266					31	17	3	0	0	0	0.24471	1	5273	5273		17.113	3.2068	1	155370			16550	4481	9384	9385	20873	20873					0.12564363550882263
IVVTLYKKS	9	Unmodified	_IVVTLYKKS_					0	0	0		nc|ENSG00000143147|Q8N6U8-2|GPR161;ENST00000493800.1_1_1:168059784-168074118:-|nuORF;ENSG00000143147|ENST00000682931|GPR161;nc|ENSG00000143147|Q8N6U8-6|GPR161	nc|ENSG00000143147|Q8N6U8-2|GPR161	nc|ENSG00000143147|Q8N6U8-2|GPR161	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7786865234375	2	525.831517	1049.64848	0.28519	0.00014996	-2.3472	-0.0012342	-2.062	-0.0010843	525.8299983231461	29.639	0.48829	29.653	29.421	29.91	0.013474					26	16	3	0	0	0	0.24787	1	5277	5277		15.248	9.5166	1	138610			16551	4481	9384	9385	20874	20874					0.12564363550882263
IVVVHQLNSN	10	Unmodified	_IVVVHQLNSN_					0	0	0			REV__ENSG00000136205|ENST00000311160|TNS3	REV__ENSG00000136205|ENST00000311160|TNS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2853393554688	2	561.81693	1121.61931	0.58619	0.00032933	1.8318	0.0010291	2.418	0.0013584	561.8179112699355	54.465	0.62402	54.465	54.24	54.864	0					44	22	3	0	0	0	0.31143	1	12889	12889		12.241	1.4167	1	431580	+		16552	15796	9385	9386	20875	20875					0.06336219254603748
IVVYNLPLI	9	Unmodified	_IVVYNLPLI_					0	0	0		ENST00000265339.6_1_5:133726056-133726119:+|nuORF	ENST00000265339.6_1_5:133726056-133726119:+|nuORF	ENST00000265339.6_1_5:133726056-133726119:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3277587890625	2	522.328611	1042.64267	0.60093	0.00031388	-0.22575	-0.00011792	0.37518	0.00019597	522.3283899779809	88.347	2.3812	88.347	87.951	90.332	0					340	143	5	0	0	0	0.28128	1	23768	23768		11.64	0	1	2795300			16553	9043	9386	9387	20876	20876					0.12305265039231017
IVVYNLPLI	9	Unmodified	_IVVYNLPLI_					0	0	0		ENST00000265339.6_1_5:133726056-133726119:+|nuORF	ENST00000265339.6_1_5:133726056-133726119:+|nuORF	ENST00000265339.6_1_5:133726056-133726119:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3279418945312	2	522.328611	1042.64267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.982	1	91.982	91.482	92.482	0								0	0	0	0.24522	1	24446	24446		7.9102	0	1				16554	9043	9386	9387	20877	20877					0.12305265039231017
IVVYNLPLI	9	Unmodified	_IVVYNLPLI_					0	0	0		ENST00000265339.6_1_5:133726056-133726119:+|nuORF	ENST00000265339.6_1_5:133726056-133726119:+|nuORF	ENST00000265339.6_1_5:133726056-133726119:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3194580078125	2	522.328611	1042.64267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.002	1	94.001	93.501	94.501	-0.00051117								0	0	0	0.24522	1	25055	25055		7.9102	0	1				16555	9043	9386	9387	20878	20878					0.12305265039231017
IVWPCLLLV	9	Unmodified	_IVWPCLLLV_					0	0	0			REV__ENSG00000145740|ENST00000396591|SLC30A5	REV__ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.31982421875	2	528.319731	1054.62491	0.43049	0.00022744	-0.18473	-9.7598E-05	0.24576	0.00012984	528.3195713188496	26.934	0.8878	26.934	26.673	27.561	0					78	30	3	0	0	0	0.2616	1	4523	4523		14.582	2.0501	1	697200	+		16556	16305	9387	9388	20879	20879					0.09978226512725996
IVWPCLLLV	9	Unmodified	_IVWPCLLLV_					0	0	0			REV__ENSG00000145740|ENST00000396591|SLC30A5	REV__ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3200073242188	2	528.319731	1054.62491	0.32983	0.00017426	-0.27175	-0.00014357	0.058085	3.0688E-05	528.3196211063254	26.931	0.90942	26.91	26.65	27.559	-0.021412					92	31	4	0	0	0	0.2616	1	4484	4484		14.582	2.0501	1	630710	+		16557	16305	9387	9388	20880	20880					0.09978226512725996
IVYDTNTENI	10	Unmodified	_IVYDTNTENI_					0	0	0		ENSG00000196151|ENST00000359774|WDSUB1	ENSG00000196151|ENST00000359774|WDSUB1	ENSG00000196151|ENST00000359774|WDSUB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.2885131835938	2	591.287868	1180.56118	0.4186	0.00024751	0.57658	0.00034093	0.99518	0.00058844	591.2884241756541	70.338	0.8895	70.398	70.127	71.017	0.060783					100	31	5	0	0	0	0.18128	1	17885	17885		34.932	0.53034	1	2811700			16558	7827	9388	9389	20881	20881					-0.021875071813155955
IVYDWVFEQ	9	Unmodified	_IVYDWVFEQ_					0	0	0			REV__ENSG00000186871|ENST00000334463|ERCC6L	REV__ENSG00000186871|ENST00000334463|ERCC6L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.3021240234375	2	599.792589	1197.57063	0.35435	0.00021254	0.64444	0.00038653	0.99879	0.00059906	599.7917485648566	22.309	0.48727	22.309	22.076	22.563	0					22	16	2	0	0	0	0.26031	1	3117	3117		3.5965	0	1	48150	+		16559	18477	9389	9390	20882	20882					-0.020256941051457034
IVYFLQNY	8	Unmodified	_IVYFLQNY_					0	0	0		ENST00000540952.5_1_22:38982050-39003412:-|nuORF;nc|ENSG00000184949|F5H4B4-2|FAM227A;ENSG00000184949|ENST00000535113|FAM227A	ENST00000540952.5_1_22:38982050-39003412:-|nuORF	ENST00000540952.5_1_22:38982050-39003412:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2954711914062	2	530.279118	1058.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.25	1	116.27	115.77	116.77	0.020988								0	0	0	0.37078	1	30167	30167		5.2307	0	1				16560	7486	9390	9391	20883	20883					0.01675242074338712
IVYFLQNY	8	Unmodified	_IVYFLQNY_					0	0	0		ENST00000540952.5_1_22:38982050-39003412:-|nuORF;nc|ENSG00000184949|F5H4B4-2|FAM227A;ENSG00000184949|ENST00000535113|FAM227A	ENST00000540952.5_1_22:38982050-39003412:-|nuORF	ENST00000540952.5_1_22:38982050-39003412:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2794189453125	2	530.279118	1058.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.64	1	119.67	119.17	120.17	0.027756								0	0	0	0.37078	1	30935	30935		5.2307	0	1				16561	7486	9390	9391	20884	20884					0.01675242074338712
IVYKYLYLWFS	11	Unmodified	_IVYKYLYLWFS_					0	0	0			REV__MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|12|1|sense	REV__MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|12|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.9389953613281	3	498.939235	1493.79587	0.17692	8.8273E-05	-0.52366	-0.00026128	-0.34674	-0.000173	498.9388995734732	15.855	0.76944	15.855	15.498	16.267	0					58	26	4	0	0	0	0.48247	1	1163	1163		0.40827	0	1	147590	+		16562	22855	9391	9392	20885	20885					0.06872835365015817
IVYRRFRHGF	10	Unmodified	_IVYRRFRHGF_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2480773925781	3	450.922912	1349.74691	0.12237	5.518E-05	1.0882	0.00049071	1.2106	0.00054589	450.92346673590197	28.773	0.81813	28.769	28.438	29.256	-0.0042572					73	28	4	0	0	0	0.24437	1	5057	5057		27.223	14.367	1	310890			16563	4659	9392	9393	20886	20886					0.0860240463930495
IVYRRFRHGF	10	Unmodified	_IVYRRFRHGF_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2479553222656	3	450.922912	1349.74691	0.035071	1.5814E-05	1.2883	0.00058091	1.3233	0.00059673	450.92344991675844	28.785	0.90601	28.785	28.41	29.316	0.0004673					64	31	3	0	0	0	0.30504	1	5042	5042		21.59	11.275	1	334800			16564	4659	9392	9393	20887	20887					0.0860240463930495
IWAVFISYP	9	Unmodified	_IWAVFISYP_					0	0	0			REV__nc|ENSG00000042781|O75445-3|USH2A	REV__nc|ENSG00000042781|O75445-3|USH2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.306640625	2	548.29731	1094.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.264	1	16.149	15.649	16.649	-0.11434								0	0	0	0.26258	1	1277	1277		2.3027	0.24298	1		+		16565	22882	9393	9394	20888	20888					0.03656118971025535
IWCLIFAAM	9	Unmodified	_IWCLIFAAM_					0	0	0			REV__ENSG00000196639|ENST00000431010|HRH1	REV__ENSG00000196639|ENST00000431010|HRH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.81005859375	2	534.274467	1066.53438	0.33881	0.00018102	3.226	0.0017235	3.5648	0.0019046	534.7786007309924	33.959	0.13267	34.026	33.939	34.071	0.0667					6	4	2	0	0	0	0.25291	1	6648	6648		9.3474	2.9933	1	55433	+		16566	18670	9394	9395	20889	20889					0.003774341927964997
IWDLGLLIF	9	Unmodified	_IWDLGLLIF_					0	0	0		ENST00000423536.5_1_20:37049499-37055082:-|nuORF;ENST00000436764.5_1_20:37049499-37050843:-|nuORF	ENST00000423536.5_1_20:37049499-37055082:-|nuORF	ENST00000423536.5_1_20:37049499-37055082:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3161010742188	2	545.320786	1088.62702	0.54327	0.00029626	-0.59842	-0.00032633	-0.05514	-3.0069E-05	545.319839345998	93.617	1.1566	93.703	93.06	94.217	0.08667					249	97	4	0	0	0	0.30166	1	24776	24776		8.5933	0	1	1281000			16567	10387	9395	9396	20890	20890					0.08624978522175297
IWELIKLKEP	10	Unmodified	_IWELIKLKEP_					0	0	0			REV__nc|ENSG00000116675|O75061-4|DNAJC6	REV__nc|ENSG00000116675|O75061-4|DNAJC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.884765625	2	634.884281	1267.75401	0.46381	0.00029447	-0.64453	-0.0004092	-0.18072	-0.00011474	634.8838130084537	71.064	0.57951	71.125	70.718	71.297	0.060783					30	20	2	0	0	0	0.41673	1	17990	17990		0.40072	0	1	320930	+		16568	14930	9396	9397	20891	20891					0.13084279676513688
IWELIKLKEP	10	Unmodified	_IWELIKLKEP_					0	0	0			REV__nc|ENSG00000116675|O75061-4|DNAJC6	REV__nc|ENSG00000116675|O75061-4|DNAJC6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	634.884281	1267.75401	0.35834	0.00022751	-0.09377	-5.9533E-05	0.26457	0.00016797	634.884237852814	71.086	0.68852	71.086	70.573	71.262	0	0.0051737	0.00064626	NaN	0.40072	30	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300200	+		16569	14930	9396	9397							0.13084279676513688
IWELIKLKEP	10	Unmodified	_IWELIKLKEP_					0	0	0			REV__nc|ENSG00000116675|O75061-4|DNAJC6	REV__nc|ENSG00000116675|O75061-4|DNAJC6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	634.884281	1267.75401	0.46381	0.00029447	-0.64453	-0.0004092	-0.18072	-0.00011474	634.8838130084537	71.064	0.57951	71.125	70.718	71.297	0.060783	0.043386	-5.3085E-05	NaN	0.40072	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320930	+		16570	14930	9396	9397							0.13084279676513688
IWELIKLKEP	10	Unmodified	_IWELIKLKEP_					0	0	0			REV__nc|ENSG00000116675|O75061-4|DNAJC6	REV__nc|ENSG00000116675|O75061-4|DNAJC6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	634.884281	1267.75401	0.62942	0.00039961	-0.9125	-0.00057933	-0.28308	-0.00017973	634.883683182699	71.058	0.53955	71.033	70.804	71.344	-0.024872	-0.048559	-0.00039335	NaN	0.40072	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388000	+		16571	14930	9396	9397							0.13084279676513688
IWELSAPL	8	Unmodified	_IWELSAPL_					0	0	0			REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7603759765625	2	464.760561	927.506569	0.10815	5.0263E-05	0.7928	0.00036846	0.90094	0.00041872	464.7607866655946	69.336	1.0993	69.314	68.918	70.018	-0.022087					85	39	3	0	0	0	0.33916	2	17543	17529;17543		26.341	4.5946	1	500020	+		16572	16070	9397	9398	20892;20893	20893					0.03991570528569355
IWFLIQTNI	9	Unmodified	_IWFLIQTNI_					0	0	0			REV__ENSG00000151287|ENST00000376032|TEX30	REV__ENSG00000151287|ENST00000376032|TEX30	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.725341796875	2	574.329142	1146.64373	0.31645	0.00018174	3.1419	0.0018045	3.4583	0.0019862	574.3311028746283	49.6	0.20564	49.645	49.489	49.695	0.044891					10	7	2	0	0	0	0.24471	1	11432	11432		17.113	0	1	141770	+		16573	16533	9398	9399	20894	20894					0.07627479408165527
IWGGGRWMQ	9	Unmodified	_IWGGGRWMQ_					0	0	0		ENST00000352241.8_1_3:70016499-70016595:+|nuORF	ENST00000352241.8_1_3:70016499-70016595:+|nuORF	ENST00000352241.8_1_3:70016499-70016595:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2955932617188	2	545.766186	1089.51782	0.51936	0.00028345	-0.90055	-0.00049149	-0.38119	-0.00020804	545.7657277091124	17.604	0.37816	17.543	17.358	17.736	-0.060429					18	12	2	0	0	0	0.25879	1	1721	1721		4.756	1.1595	1	48296			16574	9580	9399	9400	20895	20895					-0.023359306489510345
IWINYLKDI	9	Unmodified	_IWINYLKDI_					0	0	0			REV__ENST00000486964.5_1_2:86305209-86332944:-|nuORF	REV__ENST00000486964.5_1_2:86305209-86332944:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.33447265625	2	589.334424	1176.6543	0.51033	0.00030076	-0.17453	-0.00010286	0.3358	0.0001979	589.3339868404069	57.08	0.58226	57.08	56.823	57.405	0					51	21	3	0	0	0	0.18208	1	13738	13738		26.268	3.6101	1	969160	+		16575	13703	9400	9401	20896	20896					0.07303462062577637
IWINYLKDI	9	Unmodified	_IWINYLKDI_					0	0	0			REV__ENST00000486964.5_1_2:86305209-86332944:-|nuORF	REV__ENST00000486964.5_1_2:86305209-86332944:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3341674804688	2	589.334424	1176.6543	0.37244	0.00021949	0.40831	0.00024063	0.78075	0.00046012	589.3340052548045	56.88	0.53032	56.959	56.756	57.287	0.078674					54	19	4	0	0	0	0.13748	1	13696	13696		32.786	7.7947	1	983330	+		16576	13703	9400	9401	20897	20897					0.07303462062577637
IWINYLKDI	9	Unmodified	_IWINYLKDI_					0	0	0			REV__ENST00000486964.5_1_2:86305209-86332944:-|nuORF	REV__ENST00000486964.5_1_2:86305209-86332944:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3336181640625	2	589.334424	1176.6543	0.24417	0.0001439	-0.42102	-0.00024812	-0.17685	-0.00010423	589.3337544511909	57.3	0.62489	57.283	57.006	57.631	-0.017197					58	22	3	0	0	0	0.18208	2	13787	13787;13840		26.268	20.415	1	797070	+		16577	13703	9400	9401	20898;20899	20898					0.07303462062577637
IWINYLKDI	9	Unmodified	_IWINYLKDI_					0	0	0			REV__ENST00000486964.5_1_2:86305209-86332944:-|nuORF	REV__ENST00000486964.5_1_2:86305209-86332944:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	589.334424	1176.6543	0.24417	0.0001439	-0.42102	-0.00024812	-0.17685	-0.00010423	589.3337544511909	57.3	0.62489	57.283	57.006	57.631	-0.017197	0.1752	-0.00037863	NaN	32.786	58	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	797070	+		16578	13703	9400	9401							0.07303462062577637
IWKLLITIHD	10	Unmodified	_IWKLLITIHD_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.3773803710938	2	626.376623	1250.73869	0.22133	0.00013864	2.5428	0.0015927	2.7641	0.0017314	626.3780333049775	39.784	1.3496	39.883	39.292	40.641	0.099407					92	48	2	0	0	0	0.40943	1	8441	8441		1.4819	0	1	306980			16579	8647	9401	9402	20900	20900					0.12335412879338037
IWKLLITIHD	10	Unmodified	_IWKLLITIHD_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	626.376623	1250.73869	0.15922	9.9731E-05	2.1565	0.0013508	2.3158	0.0014505	626.3782325480795	39.646	1.2781	39.739	39.307	40.585	0.09267	-0.072024	-0.00023497	NaN	1.4819	87	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288570			16580	8647	9401	9402							0.12335412879338037
IWKLYIKS	8	Unmodified	_IWKLYIKS_					0	0	0		ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2	ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7786254882812	2	525.820953	1049.62735	0.49734	0.00026151	-2.9625	-0.0015577	-2.4651	-0.0012962	526.3207094135806	29.605	0.47204	29.617	29.302	29.774	0.012266					30	15	3	0	0	0	0.34039	1	5273	5273		15.847	2.3393	1	151630			16581	11681;3807	9402	9403	20901	20901					0.10452398242023264
IWLTPDILKR	10	Unmodified	_IWLTPDILKR_					0	0	0		ENSG00000087116|ENST00000251582|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.6137084960938	2	627.882073	1253.74959	0.015254	9.5776E-06	-2.8881	-0.0018134	-2.8728	-0.0018038	627.8803958019711	28.637	0.22563	28.637	28.55	28.776	0.0004673					11	7	2	0	0	0	0.32132	1	5024	5024		1.4819	1.1749	1	56579			16582	1297	9403	9404	20902	20902					0.13286815253582063
IWPMLRGLC	9	Unmodified	_IWPMLRGLC_					0	0	0			REV__ENST00000483824.5_1_1:40420832-40434017:+|nuORF	REV__ENST00000483824.5_1_1:40420832-40434017:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.8096923828125	2	544.790815	1087.56708	0.37158	0.00020243	-1.0048	-0.00054741	-0.63322	-0.00034497	544.7901571447849	24.113	0.45171	24.113	23.943	24.395	0					25	15	2	0	0	0	0.26145	1	3732	3732		0.52476	0.066424	1	115330	+		16583	17456	9404	9405	20903	20903					0.02679641315671688
IWPMLRGLC	9	Unmodified	_IWPMLRGLC_					0	0	0			REV__ENST00000483824.5_1_1:40420832-40434017:+|nuORF	REV__ENST00000483824.5_1_1:40420832-40434017:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.790815	1087.56708	0.60921	0.00033189	-0.86876	-0.00047329	-0.25955	-0.0001414	544.7901179370604	24.302	0.43729	24.23	24.118	24.555	-0.072559	0.01341	6.2906E-05	NaN	0.52476	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112020	+		16584	17456	9404	9405							0.02679641315671688
IWPMLRGLC	9	Unmodified	_IWPMLRGLC_					0	0	0			REV__ENST00000483824.5_1_1:40420832-40434017:+|nuORF	REV__ENST00000483824.5_1_1:40420832-40434017:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	544.790815	1087.56708	0.51292	0.00027943	-0.86735	-0.00047252	-0.35443	-0.00019309	544.7901827545089	24.345	0.45816	24.306	24.049	24.507	-0.038927	0.089592	6.4441E-05	NaN	0.52476	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115070	+		16585	17456	9404	9405							0.02679641315671688
IWRRRRKMRRR	11	Unmodified	_IWRRRRKMRRR_					0	0	0			REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.0119018554688	3	557.346332	1669.01717	-0.085193	-4.7482E-05	-0.41132	-0.00022925	-0.49651	-0.00027673	557.3458739605776	98.943	0.16222	98.943	98.889	99.051	0					33	18	2	0	0	0	0.33352	1	26493	26493		0	0	1	129010	+		16586	19561	9405	9406	20904	20904					0.20941854423722361
IWRRRRKMRRR	11	Unmodified	_IWRRRRKMRRR_					0	0	0			REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.012451171875	3	557.346332	1669.01717	0.18488	0.00010304	-1.1644	-0.00064896	-0.97949	-0.00054591	557.3455355392956	96.695	0.25919	96.766	96.562	96.821	0.070465					38	26	2	0	0	0	0.33352	1	25843	25843		0	0	1	149650	+		16587	19561	9405	9406	20905	20905					0.20941854423722361
IWRRRRKMRRR	11	Unmodified	_IWRRRRKMRRR_					0	0	0			REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.0117797851562	3	557.346332	1669.01717	0.25787	0.00014372	-0.76362	-0.0004256	-0.50575	-0.00028188	557.3457155170187	97.333	0.66056	97.328	97.158	97.819	-0.0055466					150	69	4	0	0	0	0.33352	1	26114	26114		0	0	1	246050	+		16588	19561	9405	9406	20906	20906					0.20941854423722361
IWRRRRKMRRR	11	Unmodified	_IWRRRRKMRRR_					0	0	0			REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	557.346332	1669.01717	0.12134	6.763E-05	-0.69046	-0.00038483	-0.56912	-0.0003172	557.3458061105456	98.777	0.092979	98.828	98.793	98.886	0.050888	-0.057302	-0.00026466	NaN	0	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417600	+		16589	19561	9405	9406							0.20941854423722361
IWRYLLLM	8	Unmodified	_IWRYLLLM_					0	0	0		ENST00000436104.6_1_16:67862410-67864187:-|nuORF	ENST00000436104.6_1_16:67862410-67864187:-|nuORF	ENST00000436104.6_1_16:67862410-67864187:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3226318359375	2	554.322805	1106.63106	0.26603	0.00014746	0.36274	0.00020107	0.62877	0.00034854	554.3229902320293	28.766	0.50591	28.766	28.472	28.978	0					27	17	2	0	0	0	0.45015	1	5032	5032		5.7604	0.46354	1	94577			16590	10519	9406	9407	20907	20907					0.08200744744249278
IWSKLQLK	8	Unmodified	_IWSKLQLK_					0	0	0		ENSG00000175105|ENST00000636215|ZNF654;ZNF654|p.N73Efs*5|1|0.06|ENSG00000175105|chr3:88139526-88139527|-/GAAC|frameshift_variant;ENST00000473136.4_2_3:88108451-88184391:+|nuORF	ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.289794921875	2	508.318577	1014.6226	0.2315	0.00011768	-2.8146	-0.0014307	-2.5831	-0.001313	508.8182870421715	22.091	0.14281	22.091	22.017	22.16	0					7	4	2	0	0	0	0.3425	1	3024	3024		9.3831	1.473	1	28435			16591	6838	9407	9408	20908	20908					0.1158751409928982
IWTVGGSFSF	10	Unmodified	_IWTVGGSFSF_					0	0	0			REV__nc|ENSG00000197617|Q7Z5H4|VN1R5	REV__nc|ENSG00000197617|Q7Z5H4|VN1R5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.295166015625	2	550.7742	1099.53385	0.21129	0.00011637	3.5484	0.0019543	3.7596	0.0020707	550.7759155410364	61.3	0.17907	61.29	61.22	61.399	-0.0094566					8	6	2	0	0	0	0.30079	1	15046	15046		20.454	2.3073	1	234760	+		16592	23157	9408	9409	20909	20909					-0.01193945931026974
IWWHDPFR	8	Unmodified	_IWWHDPFR_					0	0	0			REV__ENST00000374466.3_1_10:43671448-43678704:+|nuORF	REV__ENST00000374466.3_1_10:43671448-43678704:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.7894287109375	2	578.787976	1155.5614	0.11146	6.4514E-05	0.99414	0.0005754	1.1056	0.00063991	578.7883168054213	16.33	0.66564	16.215	15.921	16.586	-0.11434					51	22	3	0	0	0	0.46517	1	1378	1378		0.6015	0	1	118470	+		16593	20461	9409	9410	20910	20910					-0.010159978801766556
IWWLKDEEI	9	Unmodified	_IWWLKDEEI_					0	0	0		ENSG00000108387|ENST00000672673|SEPTIN4	ENSG00000108387|ENST00000672673|SEPTIN4	ENSG00000108387|ENST00000672673|SEPTIN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2172546386719	3	411.216768	1230.62847	0.085866	3.5309E-05	0.54376	0.0002236	0.62963	0.00025891	411.2169311635563	46.765	1.2801	46.765	46.402	47.682	0					138	45	5	0	0	0	0.11461	1	10624	10624		27.223	2.3417	1	9264400			16594	2182	9410	9411	20911	20911					0.022385678202681447
IWYAIALF	8	Unmodified	_IWYAIALF_					0	0	0			REV__TRPC7|p.N767Sfs*4|1|0.04|ENSG00000069018|chr5:136225319-136225320|-/AGTCCCATGAC|frameshift_variant	REV__TRPC7|p.N767Sfs*4|1|0.04|ENSG00000069018|chr5:136225319-136225320|-/AGTCCCATGAC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7823486328125	2	498.781296	995.54804	0.3712	0.00018515	0.95666	0.00047717	1.3279	0.00066231	498.7819587374879	75.254	1.4893	75.254	74.731	76.22	0					94	53	3	0	0	0	0.43455	1	19450	19450		11.114	1.767	1	393130	+		16595	13710	9411	9412	20912	20912					0.050087512878803864
IWYAIALF	8	Unmodified	_IWYAIALF_					0	0	0			REV__TRPC7|p.N767Sfs*4|1|0.04|ENSG00000069018|chr5:136225319-136225320|-/AGTCCCATGAC|frameshift_variant	REV__TRPC7|p.N767Sfs*4|1|0.04|ENSG00000069018|chr5:136225319-136225320|-/AGTCCCATGAC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7826843261719	2	498.781296	995.54804	0.40006	0.00019954	1.0913	0.00054432	1.4914	0.00074386	498.7820088687504	74.957	1.2095	75.01	74.758	75.967	0.052361					71	44	2	0	0	0	0.43455	1	19421	19421		11.114	0.93107	1	439900	+		16596	13710	9411	9412	20913	20913					0.050087512878803864
IYAAAIRSL	9	Unmodified	_IYAAAIRSL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENST00000547085.1_1_12:112600816-112607652:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.8133544921875	2	489.292559	976.570566	0.54092	0.00026467	-0.32718	-0.00016009	0.21374	0.00010458	489.2922573909063	48.392	0.26649	48.436	48.294	48.56	0.04332					14	9	2	0	0	0	0.14646	1	11079	11079		36.506	18.36	1	220400			16597	6689	9412	9413	20914	20914					0.08134350685497793
IYAAEIEMQ	9	Unmodified	_IYAAEIEMQ_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7716064453125	2	534.257525	1066.5005	0.54214	0.00028964	-2.0612	-0.0011012	-1.5191	-0.00081157	534.2543076803574	64.775	0.11232	64.765	64.723	64.835	-0.0095291					5	3	2	0	0	0	0.25314	1	16113	16113		15.847	2.3393	1	53345	+		16598	19088	9413	9414	20915	20915					-0.030093157652800073
IYAAFWRF	8	Unmodified	_IYAAFWRF_					0	0	0		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.718017578125	2	537.281995	1072.54944	-0.96826	-0.00052023	-2.5926	-0.0013929	-3.5608	-0.0019132	537.2807814199778	34.894	0.27827	34.894	34.839	35.118	0					10	9	2	0	0	0	0.34147	1	6998	6998		11.114	2.5212	1	67438			16599	3006	9414	9415	20916	20916					0.01606385376635444
IYADNQVMHF	10	Oxidation (M)	_IYADNQVM(Oxidation (M))HF_		IYADNQVM(1)HF		IYADNQVM(190)HF	0	0	1		ENST00000537064.5_1_12:133201285-133234573:-|nuORF;ENSG00000177084|ENST00000320574|POLE	ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENST00000537064.5_1_12:133201285-133234573:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.2840576171875	2	627.284605	1252.55466	0.29466	0.00018484	-0.017499	-1.0977E-05	0.27717	0.00017386	627.2842293947405	41.589	0.50729	41.589	41.199	41.707	0					30	19	2	0	0	0	8.43E-14	2	8960	8960;8998		193.29	151.45	1	1552400			16600	6960	9415	9416	20917;20918	20917		783			-0.061517236137206055
IYADNQVMHF	10	Oxidation (M)	_IYADNQVM(Oxidation (M))HF_		IYADNQVM(1)HF		IYADNQVM(190)HF	0	0	1		ENST00000537064.5_1_12:133201285-133234573:-|nuORF;ENSG00000177084|ENST00000320574|POLE	ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENST00000537064.5_1_12:133201285-133234573:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.28466796875	2	627.284605	1252.55466	-0.052102	-3.2683E-05	0.58939	0.00036972	0.53729	0.00033703	627.2849009989027	41.288	0.51016	41.378	41.029	41.539	0.090252					40	18	3	0	0	0	1.0033E-13	1	8870	8870		191.38	165.98	1	1070900			16601	6960	9415	9416	20919	20919		783			-0.061517236137206055
IYADNQVMHF	10	Oxidation (M)	_IYADNQVM(Oxidation (M))HF_		IYADNQVM(1)HF		IYADNQVM(180)HF	0	0	1		ENST00000537064.5_1_12:133201285-133234573:-|nuORF;ENSG00000177084|ENST00000320574|POLE	ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENST00000537064.5_1_12:133201285-133234573:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.2848510742188	2	627.284605	1252.55466	0.17162	0.00010765	0.22106	0.00013867	0.39268	0.00024632	627.2847158341737	41.239	0.51736	41.336	40.987	41.505	0.096622					50	18	4	0	0	0	7.8588E-10	2	8847	8847;8896		179.17	141	1	1250300			16602	6960	9415	9416	20920;20921	20920		783			-0.061517236137206055
IYADYIAPLF	10	Unmodified	_IYADYIAPLF_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.3136596679688	2	593.313158	1184.61176	0.50749	0.0003011	0.34915	0.00020716	0.85664	0.00050825	593.3133177662504	89.715	1.0299	89.714	89.387	90.417	-0.00080872					211	82	4	0	0	0	0.012852	1	23740	23740		96.285	77.028	1	1235000			16603	1237	9416	9417	20922	20922					0.026840669343073387
IYADYIAPLF	10	Unmodified	_IYADYIAPLF_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	593.313158	1184.61176	0.5167	0.00030657	0.49808	0.00029552	1.0148	0.00060208	593.3134215352667	89.725	1.0563	89.725	89.369	90.425	0	0.022459	4.2576E-05	NaN	96.285	203	82	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	708130			16604	1237	9416	9417							0.026840669343073387
IYAEFEQSL	9	Unmodified	_IYAEFEQSL_					0	0	0			REV__nc|ENSG00000288702|P35503-3|UGT1A3	REV__nc|ENSG00000288702|P35503-3|UGT1A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.8211059570312	2	550.268947	1098.52334	0.62446	0.00034362	1.0682	0.00058778	1.6926	0.0009314	551.2732036146592	53.87	0.40391	53.87	53.622	54.026	0					29	14	4	0	0	0	0.25066	1	12715	12715		11.64	0	1	161700	+		16605	23246	9417	9418	20923	20923					-0.021979733761327225
IYAELGELSGF	11	Unmodified	_IYAELGELSGF_					0	0	0		ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3045654296875	2	599.803154	1197.59175	0.41786	0.00025063	-0.32299	-0.00019373	0.094867	5.6902E-05	599.8030106431509	80.355	0.28001	80.42	80.213	80.493	0.065094					15	10	2	0	0	0	0.2454	1	20858	20858		40.239	29.44	1	113010			16606	8395	9418	9419	20924	20924					0.0008627120371329511
IYAELGELSGF	11	Unmodified	_IYAELGELSGF_					0	0	0		ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	599.803154	1197.59175	0.45453	0.00027263	-0.1255	-7.5276E-05	0.32903	0.00019735	599.8030831372037	80.411	0.22598	80.411	80.24	80.466	0	-0.0044224	0.00011807	NaN	40.239	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64692			16607	8395	9418	9419							0.0008627120371329511
IYAEPVPE	8	Unmodified	_IYAEPVPE_					0	0	0		ENSG00000070526|ENST00000156626|ST6GALNAC1;ENST00000592042.5_1_17:74621414-74633692:-|nuORF;ENST00000590878.1_1_17:74623349-74639792:-|nuORF	ENSG00000070526|ENST00000156626|ST6GALNAC1	ENSG00000070526|ENST00000156626|ST6GALNAC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.79217529296875	2	459.234376	916.454199	-0.16353	-7.5097E-05	0.48551	0.00022297	0.32199	0.00014787	459.23454576110345	61.524	0.35074	61.514	61.376	61.727	-0.0094528					15	12	2	0	0	0	0.32778	1	15146	15146		14.582	9.8257	1	190710			16608	931	9419	9420	20925	20925					-0.007370126050432191
IYAEPVPE	8	Unmodified	_IYAEPVPE_					0	0	0		ENSG00000070526|ENST00000156626|ST6GALNAC1;ENST00000592042.5_1_17:74621414-74633692:-|nuORF;ENST00000590878.1_1_17:74623349-74639792:-|nuORF	ENSG00000070526|ENST00000156626|ST6GALNAC1	ENSG00000070526|ENST00000156626|ST6GALNAC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	459.234376	916.454199	-0.082598	-3.7932E-05	0.61985	0.00028465	0.53725	0.00024672	459.2346109806193	61.646	0.55825	61.646	61.413	61.971	0	0.065631	9.6624E-05	NaN	14.582	25	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125400			16609	931	9419	9420							-0.007370126050432191
IYAFCAGWF	9	Unmodified	_IYAFCAGWF_					0	0	0			REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2473754882812	2	539.246763	1076.47897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.061	1	88.15	87.65	88.65	0.089195								0	0	0	0.22457	1	23240	23240		14.582	3.4672	1		+		16610	15987	9420	9421	20926	20926					-0.05620656003316071
IYAFGIVLY	9	Unmodified	_IYAFGIVLY_					0	0	0		ENST00000445336.2_1_X:74804463-74804925:+|nuORF	ENST00000445336.2_1_X:74804463-74804925:+|nuORF	ENST00000445336.2_1_X:74804463-74804925:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.781494140625	2	529.799686	1057.58482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.603	1	91.694	91.194	92.194	0.090668								0	0	0	0.17818	1	24322	24322		28.173	3.4993	1				16611	10584	9421	9422	20927	20927					0.058330031137984406
IYAGFVAVSF	10	Unmodified	_IYAGFVAVSF_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.710693359375	2	537.286943	1072.55933	0.34467	0.00018519	-0.45522	-0.00024458	-0.11055	-5.9396E-05	537.7879959188417	66.817	1.0821	66.804	66.539	67.621	-0.013588					55	37	2	0	0	0	0.24123	1	16788	16788		28.487	10.352	1	241750	+		16612	17474	9422	9423	20928	20928					0.0259552859138239
IYAGVGEFSF	10	Unmodified	_IYAGVGEFSF_					0	0	0		nc|ENSG00000156970|O60566-2|BUB1B;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-2|BUB1B	nc|ENSG00000156970|O60566-2|BUB1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.316650390625	2	545.266207	1088.51786	0.9748	0.00053152	0.076628	4.1783E-05	1.0514	0.00057331	545.2663802290143	77.656	0.73854	77.711	77.541	78.28	0.05542					31	26	2	0	0	0	0.29589	1	20100	20100		8.1555	2.4237	1	150900			16613	5271	9423	9424	20929	20929					-0.022856521679386788
IYAHIFILK	9	Unmodified	_IYAHIFILK_					0	0	0		nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-3|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.6226806640625	2	559.342052	1116.66955	0.5882	0.000329	-2.7765	-0.001553	-2.1883	-0.001224	559.3410285533055	45.519	0.39428	45.579	45.282	45.677	0.059834					16	13	2	0	0	0	0.23147	1	10117	10117		19.439	1.2926	1	116750			16614	5150	9424	9425	20930	20930					0.11588373650397443
IYAHIFILK	9	Unmodified	_IYAHIFILK_					0	0	0		nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-3|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.803466796875	2	559.342052	1116.66955	0.38459	0.00021512	-3.041	-0.001701	-2.6564	-0.0014859	559.3407377263982	45.496	0.2892	45.561	45.358	45.647	0.065048					15	10	2	0	0	0	0.23147	1	10150	10150		19.439	0.18201	1	217440			16615	5150	9424	9425	20931	20931					0.11588373650397443
IYAIGVGKL	9	Unmodified	_IYAIGVGKL_					0	0	0		ENSG00000166278|ENST00000299367|C2;nc|ENSG00000166278|P06681-3|C2;nc|ENSG00000166278|P06681-2|C2;ENST00000486124.5_1_6:31905151-31913001:+|nuORF	ENSG00000166278|ENST00000299367|C2	ENSG00000166278|ENST00000299367|C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2375183105469	2	467.292028	932.569503	0.26665	0.0001246	-0.17516	-8.1849E-05	0.091494	4.2754E-05	467.2919491855078	53.964	0.40852	53.964	53.806	54.214	0					25	14	2	0	0	0	0.14099	1	12806	12806		42.095	7.9921	1	307130			16616	6056	9425	9426	20932	20932					0.10052136316619453
IYAKEGGFFGF	11	Unmodified	_IYAKEGGFFGF_					0	0	0		ENSG00000122912|ENST00000609923|SLC25A16	ENSG00000122912|ENST00000609923|SLC25A16	ENSG00000122912|ENST00000609923|SLC25A16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.2748413085938	2	618.308406	1234.60226	0.24419	0.00015098	-0.4356	-0.00026934	-0.19142	-0.00011835	618.3078138168402	67.658	0.46089	67.658	67.45	67.911	0					34	15	3	0	0	0	0.21482	1	17025	17025		51.488	36.24	1	251380			16617	3078	9426	9427	20933	20933					-0.005657013512063713
IYAKEGGFFGF	11	Unmodified	_IYAKEGGFFGF_					0	0	0		ENSG00000122912|ENST00000609923|SLC25A16	ENSG00000122912|ENST00000609923|SLC25A16	ENSG00000122912|ENST00000609923|SLC25A16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.275390625	2	618.308406	1234.60226	0.23646	0.00014621	-0.4681	-0.00028943	-0.23164	-0.00014322	618.3079206860596	67.498	0.54282	67.576	67.354	67.897	0.078041					40	18	3	0	0	0	0.22653	1	16970	16970		40.725	24.878	1	297800			16618	3078	9426	9427	20934	20934					-0.005657013512063713
IYAKEGGFFGF	11	Unmodified	_IYAKEGGFFGF_					0	0	0		ENSG00000122912|ENST00000609923|SLC25A16	ENSG00000122912|ENST00000609923|SLC25A16	ENSG00000122912|ENST00000609923|SLC25A16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.2754516601562	2	618.308406	1234.60226	0.13564	8.3868E-05	-0.16631	-0.00010283	-0.030665	-1.8961E-05	618.3080100618299	67.596	0.51803	67.58	67.423	67.941	-0.016296					38	17	3	0	0	0	0.24214	1	16998	16998		44.392	29.554	1	218630			16619	3078	9426	9427	20935	20935					-0.005657013512063713
IYALFYPWF	9	Unmodified	_IYALFYPWF_					0	0	0		ENSG00000146385|ENST00000275200|TAAR8;ENSG00000146383|ENST00000275198|TAAR6	ENSG00000146385|ENST00000275200|TAAR8	ENSG00000146385|ENST00000275200|TAAR8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5534362792969	3	407.211066	1218.61137	-0.081071	-3.3013E-05	0.66673	0.0002715	0.58566	0.00023849	407.2110943528038	30.753	1.1712	30.753	30.113	31.284	0					101	41	6	0	0	0	0.2616	1	5760	5760		13.906	7.6717	1	978830			16620	4708	9427	9428	20936	20936					0.01080692005120909
IYALFYPWF	9	Unmodified	_IYALFYPWF_					0	0	0		ENSG00000146385|ENST00000275200|TAAR8;ENSG00000146383|ENST00000275198|TAAR6	ENSG00000146385|ENST00000275200|TAAR8	ENSG00000146385|ENST00000275200|TAAR8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2108154296875	3	407.211066	1218.61137	-0.21786	-8.8716E-05	0.51455	0.00020953	0.29669	0.00012082	407.21112732250464	30.635	1.2433	30.662	30.189	31.433	0.027157					101	44	4	0	0	0	0.16905	1	5552	5552		19.257	19.257	1	973410			16621	4708	9427	9428	20937	20937					0.01080692005120909
IYALKAPKS	9	Unmodified	_IYALKAPKS_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.80364990234375	2	495.80276	989.590967	0.44976	0.00022299	0.54022	0.00026784	0.98998	0.00049084	495.80296765546035	68.49	0.70052	68.49	68.25	68.951	0					62	25	3	0	0	0	0.27532	1	17223	17223		12.532	3.1841	1	1515200			16622	2868	9428	9429	20938	20938					0.095755213453117
IYALKAPKS	9	Unmodified	_IYALKAPKS_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.80377197265625	2	495.80276	989.590967	0.33226	0.00016473	0.65046	0.0003225	0.98272	0.00048723	495.80299945120834	68.44	0.72363	68.512	68.24	68.964	0.071938					69	26	4	0	0	0	0.27532	1	17198	17198		12.532	3.1841	1	1524900			16623	2868	9428	9429	20939	20939					0.095755213453117
IYALKAPKS	9	Unmodified	_IYALKAPKS_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.8038024902344	2	495.80276	989.590967	0.43038	0.00021338	0.50734	0.00025154	0.93772	0.00046492	495.80290042987735	68.486	0.56429	68.467	68.252	68.816	-0.019157					51	19	3	0	0	0	0.27532	2	17215	17215;17270		12.532	3.1841	1	1787900			16624	2868	9428	9429	20940;20941	20940					0.095755213453117
IYAMSVFML	9	2 Oxidation (M)	_IYAM(Oxidation (M))SVFM(Oxidation (M))L_		IYAM(1)SVFM(1)L		IYAM(54)SVFM(54)L	0	0	2		ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.2877197265625	2	553.766671	1105.51879	0.36491	0.00020207	-1.3301	-0.00073659	-0.96523	-0.00053451	553.7657985373901	74.864	0.63348	74.917	74.585	75.218	0.052361					33	22	2	0	0	0	0.048175	1	19225	19225		53.576	19.473	1	192310			16625	3912	9429	9430	20942	20942		490;491			-0.029748971149047065
IYAMSVFML	9	2 Oxidation (M)	_IYAM(Oxidation (M))SVFM(Oxidation (M))L_		IYAM(1)SVFM(1)L		IYAM(44)SVFM(44)L	0	0	2		ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.2876586914062	2	553.766671	1105.51879	0.59395	0.00032891	-0.52707	-0.00029188	0.06688	3.7036E-05	553.7662219521301	74.909	0.45915	74.878	74.7	75.159	-0.031487					22	16	2	0	0	0	0.12846	1	19248	19248		44.407	14.182	1	154020			16626	3912	9429	9430	20943	20943		490;491			-0.029748971149047065
IYAMSVFML	9	2 Oxidation (M)	_IYAM(Oxidation (M))SVFM(Oxidation (M))L_					0	0	2		ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.766671	1105.51879	0.63206	0.00035001	-1.1909	-0.00065945	-0.55879	-0.00030944	553.7658127142264	74.864	0.60567	74.864	74.63	75.235	0	-0.022359	-0.00010562	NaN	53.576	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276170			16627	3912	9429	9430				490;491			-0.029748971149047065
IYANTINTF	9	Unmodified	_IYANTINTF_					0	0	0		nc|ENSG00000115380|Q12805-5|EFEMP1;nc|ENSG00000115380|Q12805-2|EFEMP1;nc|ENSG00000115380|Q12805-4|EFEMP1;nc|ENSG00000115380|Q12805-3|EFEMP1;ENSG00000115380|ENST00000355426|EFEMP1	nc|ENSG00000115380|Q12805-5|EFEMP1	nc|ENSG00000115380|Q12805-5|EFEMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.82470703125	2	528.771657	1055.52876	0.55407	0.00029298	-0.10634	-5.623E-05	0.44773	0.00023675	528.7715095008397	57.6	0.60433	57.6	57.299	57.904	0					39	21	2	0	0	0	0.020591	1	13870	13870		87.258	37.325	1	930600			16628	2641	9430	9431	20944	20944					0.00321750206330762
IYANTINTF	9	Unmodified	_IYANTINTF_					0	0	0		nc|ENSG00000115380|Q12805-5|EFEMP1;nc|ENSG00000115380|Q12805-2|EFEMP1;nc|ENSG00000115380|Q12805-4|EFEMP1;nc|ENSG00000115380|Q12805-3|EFEMP1;ENSG00000115380|ENST00000355426|EFEMP1	nc|ENSG00000115380|Q12805-5|EFEMP1	nc|ENSG00000115380|Q12805-5|EFEMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8248291015625	2	528.771657	1055.52876	0.44105	0.00023321	0.064016	3.385E-05	0.50506	0.00026706	528.771513500609	57.415	0.59764	57.5	57.268	57.865	0.085621					37	21	2	0	0	0	0.020591	1	13819	13819		78.06	28.127	1	842880			16629	2641	9430	9431	20945	20945					0.00321750206330762
IYAPKLQEF	9	Unmodified	_IYAPKLQEF_					0	0	0		ENSG00000175305|ENST00000308108|CCNE2	ENSG00000175305|ENST00000308108|CCNE2	ENSG00000175305|ENST00000308108|CCNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.8056640625	2	554.8055	1107.59645	0.63351	0.00035147	-0.36941	-0.00020495	0.2641	0.00014652	554.8051827408219	54.502	0.9025	54.502	54.105	55.008	0					68	32	3	0	0	0	0.0098873	1	12909	12909		79.596	31.848	1	2845400			16630	6856	9431	9432	20946	20946					0.04695200137143729
IYAPKLQEF	9	Unmodified	_IYAPKLQEF_					0	0	0		ENSG00000175305|ENST00000308108|CCNE2	ENSG00000175305|ENST00000308108|CCNE2	ENSG00000175305|ENST00000308108|CCNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.8057861328125	2	554.8055	1107.59645	0.59458	0.00032988	-0.12584	-6.9819E-05	0.46874	0.00026006	554.805267042553	54.463	0.72218	54.526	54.218	54.941	0.063202					61	26	3	0	0	0	0.014888	1	12978	12978		71.922	24.174	1	2935900			16631	6856	9431	9432	20947	20947					0.04695200137143729
IYAPKLQEF	9	Unmodified	_IYAPKLQEF_					0	0	0		ENSG00000175305|ENST00000308108|CCNE2	ENSG00000175305|ENST00000308108|CCNE2	ENSG00000175305|ENST00000308108|CCNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.8054809570312	2	554.8055	1107.59645	0.55888	0.00031007	-0.46433	-0.00025761	0.094556	5.246E-05	554.8051121691572	54.675	0.74772	54.659	54.335	55.083	-0.015923					66	26	4	0	0	0	0.0073901	1	13016	13016		83.429	43.479	1	3697200			16632	6856	9431	9432	20948	20948					0.04695200137143729
IYAPLIAVL	9	Unmodified	_IYAPLIAVL_					0	0	0		nc|ENSG00000107518|Q5VV63-2|ATRNL1;ENSG00000107518|ENST00000355044|ATRNL1	nc|ENSG00000107518|Q5VV63-2|ATRNL1	nc|ENSG00000107518|Q5VV63-2|ATRNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.8102722167969	2	486.810054	971.605554	0.26366	0.00012835	-0.21026	-0.00010236	0.053397	2.5994E-05	486.8100259328741	91.194	0.72988	91.194	90.995	91.725	0					133	54	3	0	0	0	0.041522	2	24195	24195;24244		56.048	27.875	1	963080			16633	2128	9432	9433	20949;20950	20949					0.11861593493460987
IYAPLIAVL	9	Unmodified	_IYAPLIAVL_					0	0	0		nc|ENSG00000107518|Q5VV63-2|ATRNL1;ENSG00000107518|ENST00000355044|ATRNL1	nc|ENSG00000107518|Q5VV63-2|ATRNL1	nc|ENSG00000107518|Q5VV63-2|ATRNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.8100891113281	2	486.810054	971.605554	0.28872	0.00014055	-0.22699	-0.0001105	0.061732	3.0052E-05	486.81003463152547	91.072	0.8623	91.162	90.929	91.792	0.090668					126	64	3	0	0	0	0.041522	2	24200	24151;24200		56.048	27.875	1	1297600			16634	2128	9432	9433	20951;20952	20952					0.11861593493460987
IYAPLIAVL	9	Unmodified	_IYAPLIAVL_					0	0	0		nc|ENSG00000107518|Q5VV63-2|ATRNL1;ENSG00000107518|ENST00000355044|ATRNL1	nc|ENSG00000107518|Q5VV63-2|ATRNL1	nc|ENSG00000107518|Q5VV63-2|ATRNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.80999755859375	2	486.810054	971.605554	0.45274	0.0002204	-0.51816	-0.00025224	-0.065418	-3.1846E-05	486.8098900417841	91.193	0.70609	91.194	90.995	91.701	0.00047302					111	47	3	0	0	0	0.16905	1	24207	24207		28.173	7.302	1	1260000			16635	2128	9432	9433	20953	20953					0.11861593493460987
IYAPLVAAF	9	Unmodified	_IYAPLVAAF_					0	0	0		ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000088812|O75882-3|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7798156738281	2	482.778754	963.542954	0.29421	0.00014204	0.81262	0.00039232	1.1068	0.00053436	482.7789748319871	82.273	0.73842	82.273	81.995	82.733	0					45	26	3	0	0	0	0.0096669	2	21461	21461;21538		79.935	43.468	1	604890			16636	1330	9433	9434	20954;20955	20954					0.059724474252675464
IYAPLVAAF	9	Unmodified	_IYAPLVAAF_					0	0	0		ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000088812|O75882-3|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7796936035156	2	482.778754	963.542954	0.18234	8.8031E-05	0.80035	0.00038639	0.98269	0.00047442	482.779041733278	82.214	0.68107	82.283	81.992	82.673	0.068985					52	27	3	0	0	0	0.0096669	2	21415	21415;21458		79.935	43.468	1	466470			16637	1330	9433	9434	20956;20957	20956					0.059724474252675464
IYAPLVAAF	9	Unmodified	_IYAPLVAAF_					0	0	0		ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000088812|O75882-3|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7789611816406	2	482.778754	963.542954	0.36298	0.00017524	0.72381	0.00034944	1.0868	0.00052468	482.7789807267334	82.306	0.66263	82.286	82.032	82.694	-0.020584					38	25	2	0	0	0	0.017826	2	21487	21487;21536		67.413	30.947	1	699470			16638	1330	9433	9434	20958;20959	20958					0.059724474252675464
IYAPPLPSL	9	Unmodified	_IYAPPLPSL_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.78424072265625	2	485.784036	969.553519	0.13471	6.5441E-05	0.53174	0.00025831	0.66646	0.00032375	485.78420341815	76.337	1.5866	76.337	75.618	77.204	0					131	57	4	0	0	0	6.8028E-05	2	19659	19610;19659		146.01	74.085	1	5779500			16639	2983	9434	9435	20960;20961	20961					0.06752430079700389
IYAPPLPSL	9	Unmodified	_IYAPPLPSL_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002014160156	2	485.784036	969.553519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.149	1	78.149	77.649	78.649	0								0	0	0	0.21726	1	20205	20205		16.942	1.0951	1				16640	2983	9434	9435	20962	20962					0.06752430079700389
IYAPPLPSL	9	Unmodified	_IYAPPLPSL_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7843322753906	2	485.784036	969.553519	0.083539	4.0582E-05	0.45266	0.00021989	0.5362	0.00026048	485.78418673773615	76.278	1.2629	76.331	75.968	77.231	0.053413					90	44	3	0	0	0	6.8028E-05	3	19586	19586;19608;19631		146.01	74.085	1	4843300			16641	2983	9434	9435	20963;20964;20965	20963					0.06752430079700389
IYAPPLPSL	9	Unmodified	_IYAPPLPSL_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.78411865234375	2	485.784036	969.553519	0.37696	0.00018312	0.33114	0.00016086	0.7081	0.00034399	485.7840947370352	76.348	1.3584	76.316	75.904	77.262	-0.031479					132	49	4	0	0	0	4.6753E-07	2	19652	19606;19652		161.89	80.004	1	5714700			16642	2983	9434	9435	20966;20967	20967					0.06752430079700389
IYAPQGLLL	9	Unmodified	_IYAPQGLLL_					0	0	0		ENST00000523128.1_1_8:41363387-41364622:+|nuORF;nc|ENSG00000147533|Q7Z5G4-3|GOLGA7;ENSG00000147533|ENST00000357743|GOLGA7	ENST00000523128.1_1_8:41363387-41364622:+|nuORF	ENST00000523128.1_1_8:41363387-41364622:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.76068115234375	2	494.29731	986.580068	0.48898	0.0002417	-0.43466	-0.00021485	0.054323	2.6852E-05	494.29702561677277	76.858	1.4397	76.858	76.252	77.691	0					93	52	4	0	0	0	0.081926	1	19816	19816		57.471	31.13	1	972100			16643	4771	9435	9436	20968	20968					0.08624118971056305
IYAPQGLLL	9	Unmodified	_IYAPQGLLL_					0	0	0		ENST00000523128.1_1_8:41363387-41364622:+|nuORF;nc|ENSG00000147533|Q7Z5G4-3|GOLGA7;ENSG00000147533|ENST00000357743|GOLGA7	ENST00000523128.1_1_8:41363387-41364622:+|nuORF	ENST00000523128.1_1_8:41363387-41364622:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7607116699219	2	494.29731	986.580068	0.3422	0.00016915	-0.2446	-0.00012091	0.097601	4.8244E-05	494.2971461938209	76.8	0.94571	76.853	76.482	77.428	0.053413					74	33	4	0	0	0	0.081926	1	19757	19757		57.471	28.985	1	1070600			16644	4771	9435	9436	20969	20969					0.08624118971056305
IYAPQGLLL	9	Unmodified	_IYAPQGLLL_					0	0	0		ENST00000523128.1_1_8:41363387-41364622:+|nuORF;nc|ENSG00000147533|Q7Z5G4-3|GOLGA7;ENSG00000147533|ENST00000357743|GOLGA7	ENST00000523128.1_1_8:41363387-41364622:+|nuORF	ENST00000523128.1_1_8:41363387-41364622:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7608947753906	2	494.29731	986.580068	0.60815	0.00030061	-0.50593	-0.00025008	0.10221	5.0524E-05	494.2969703688915	76.9	1.4939	76.868	76.346	77.84	-0.031334					98	54	4	0	0	0	0.090484	1	19811	19811		54.774	30.1	1	942950			16645	4771	9435	9436	20970	20970					0.08624118971056305
IYAPTLLVF	9	Unmodified	_IYAPTLLVF_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.8074340820312	2	518.807511	1035.60047	0.36992	0.00019192	-0.16268	-8.4402E-05	0.20724	0.00010752	518.8073792479563	91.767	1.0772	91.767	91.338	92.415	0					220	79	4	0	0	0	0.00097449	2	24396	24355;24396		123.1	48.7	1	1583500			16646	2705	9436	9437	20971;20972	20972					0.08409289630867534
IYAPTLLVF	9	Unmodified	_IYAPTLLVF_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.8075561523438	2	518.807511	1035.60047	0.33706	0.00017487	-0.19056	-9.8864E-05	0.1465	7.6007E-05	518.8073923344205	91.607	1.784	91.698	91.454	93.238	0.090668					296	134	4	0	0	0	0.0036555	3	24329	24288;24329;24373		97.075	33.512	1	1591300			16647	2705	9436	9437	20973;20974;20975	20974					0.08409289630867534
IYAPTLLVF	9	Unmodified	_IYAPTLLVF_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	518.807511	1035.60047	0.48378	0.00025099	-0.33379	-0.00017317	0.14998	7.7813E-05	518.8073287777852	91.752	1.4567	91.752	91.437	92.894	0.00046539	0.01327	-0.00011427	NaN	123.1	260	98	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1723200			16648	2705	9436	9437							0.08409289630867534
IYAQRRTDA	9	Unmodified	_IYAQRRTDA_					0	0	0		ENST00000481328.7_1_11:76905078-76923312:+|nuORF;nc|ENSG00000137474|Q13402-5|MYO7A;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A	ENST00000481328.7_1_11:76905078-76923312:+|nuORF	ENST00000481328.7_1_11:76905078-76923312:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7728881835938	2	547.291079	1092.56761	0.49147	0.00026898	0.44132	0.00024153	0.9328	0.00051051	547.2913735743061	26.856	0.79655	26.834	26.419	27.215	-0.02141					42	27	2	0	0	0	0.25123	1	4466	4466		12.241	8.9593	1	276460			16649	4049	9437	9438	20976	20976					0.02502475560709172
IYAQWHHQ	8	Unmodified	_IYAQWHHQ_					0	0	0		nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3081665039062	2	541.761958	1081.50936	0.72431	0.0003924	0.69731	0.00037777	1.4216	0.00077018	541.7623911768619	82.89	1.069	82.869	82.328	83.397	-0.020584					61	29	3	0	0	0	0.34337	1	21490	21490		5.2307	3.1709	1	449170			16650	4139	9438	9439	20977	20977					-0.028131612939205297
IYARAANMF	9	Oxidation (M)	_IYARAANM(Oxidation (M))F_		IYARAANM(1)F		IYARAANM(85)F	0	0	1		ENSG00000105402|ENST00000263354|NAPA;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;ENST00000593785.5_1_19:48000055-48018221:-|nuORF	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.7653198242188	2	536.765852	1071.51715	-0.80641	-0.00043285	-0.34958	-0.00018764	-1.156	-0.0006205	536.765636582229	34.762	1.0752	34.762	34.5	35.575	0					79	38	3	0	0	0	0.006189	1	6915	6915		85.272	53.155	1	486850			16651	1977	9439	9440	20978	20978		242			-0.01574770088677724
IYARAANMF	9	Oxidation (M)	_IYARAANM(Oxidation (M))F_		IYARAANM(1)F		IYARAANM(110)F	0	0	1		ENSG00000105402|ENST00000263354|NAPA;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;ENST00000593785.5_1_19:48000055-48018221:-|nuORF	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7650146484375	2	536.765852	1071.51715	-0.41692	-0.00022379	-0.52077	-0.00027953	-0.9377	-0.00050332	536.7655149918944	34.931	0.97306	35.009	34.444	35.418	0.077377					66	34	3	0	0	0	0.0022761	2	6865	6865;6923		108	75.88	1	491260			16652	1977	9439	9440	20979;20980	20979		242			-0.01574770088677724
IYASPHLVL	9	Unmodified	_IYASPHLVL_					0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000102001|O60840-5|CACNA1F	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.79290771484375	2	506.794935	1011.57532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.891	1	36.978	36.478	37.478	0.08741								0	0	0	0.14428	1	7541	7541		36.044	0	1		+		16653	14299	9440	9441	20981	20981					0.06999234828265344
IYASVMEYF	9	Oxidation (M)	_IYASVM(Oxidation (M))EYF_		IYASVM(1)EYF		IYASVM(100)EYF	0	0	1		ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.7604370117188	2	569.759901	1137.50525	0.41942	0.00023897	0.15755	8.9765E-05	0.57697	0.00032873	569.7599460091967	69.117	0.88882	69.188	68.781	69.67	0.071938					81	31	4	0	0	0	0.0050635	1	17502	17502		100.37	70.147	1	1236700			16654	6077	9441	9442	20982	20982		711			-0.05800431622492397
IYASVMEYF	9	Oxidation (M)	_IYASVM(Oxidation (M))EYF_					0	0	1		ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.759901	1137.50525	0.17811	0.00010148	0.34756	0.00019803	0.52567	0.0002995	569.7600475614947	69.153	0.88763	69.153	68.872	69.76	0	-0.0015247	7.7093E-05	NaN	100.37	91	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1363400			16655	6077	9441	9442				711			-0.05800431622492397
IYASVMEYF	9	Oxidation (M)	_IYASVM(Oxidation (M))EYF_					0	0	1		ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	569.759901	1137.50525	0.19672	0.00011208	0.35249	0.00020083	0.5492	0.00031291	569.7600803478463	69.141	1.0993	69.122	68.921	70.021	-0.019157	-0.032482	8.2708E-05	NaN	100.37	87	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1054000			16656	6077	9441	9442				711			-0.05800431622492397
IYASVRTLL	9	Unmodified	_IYASVRTLL_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.761962890625	2	518.313492	1034.61243	0.53126	0.00027536	0.20868	0.00010816	0.73994	0.00038352	518.3135051202534	55.661	0.50465	55.661	55.431	55.935	0					38	17	3	0	0	0	0.18936	1	13361	13361		32.786	4.2988	1	604620			16657	3451	9442	9443	20983	20983					0.09650906374054102
IYATLLRKP	9	Unmodified	_IYATLLRKP_					0	0	0			REV__nc|ENSG00000228970|P0CB48|UBTFL6	REV__nc|ENSG00000228970|P0CB48|UBTFL6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.718017578125	2	537.837134	1073.65972	-0.96134	-0.00051705	-0.40753	-0.00021918	-1.3689	-0.00073623	537.8368066145208	34.965	0.4223	35.04	34.788	35.21	0.075306					23	14	2	0	0	0	0.24311	1	6945	6945		11.64	0	1	128540	+		16658	23201	9443	9444	20984	20984					0.12583185645030426
IYCCCLSVLF	10	Unmodified	_IYCCCLSVLF_					0	0	0			REV__ENST00000508878.5_1_5:127412691-127417708:-|nuORF	REV__ENST00000508878.5_1_5:127412691-127417708:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.2683715820312	2	582.268524	1162.52249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.357	1	74.41	73.91	74.91	0.052361								0	0	0	0.34495	1	19043	19043		16.942	5.302	1		+		16659	21780	9444	9445	20985	20985					-0.05226550612724168
IYCNVTNVK	9	Unmodified	_IYCNVTNVK_					0	0	0		ENSG00000078589|ENST00000171757|P2RY10	ENSG00000078589|ENST00000171757|P2RY10	ENSG00000078589|ENST00000171757|P2RY10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7578735351562	2	527.273509	1052.53247	0.47683	0.00025142	-0.71834	-0.00037876	-0.24151	-0.00012734	527.2728586929201	38.194	0.42822	38.291	38.037	38.465	0.097527					17	14	2	0	0	0	0.23784	1	7966	7966		19.257	3.4098	1	108440			16660	1110	9445	9446	20986	20986					0.008300967085460798
IYCQQFSSING	11	Unmodified	_IYCQQFSSING_					0	0	0			REV__ENST00000260118.6_1_8:63927894-63927963:-|nuORF	REV__ENST00000260118.6_1_8:63927894-63927963:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.2897338867188	2	630.289888	1258.56522	0.37324	0.00023525	0.25734	0.0001622	0.63058	0.00039745	630.2900164106045	74.242	0.44414	74.212	74	74.444	-0.030663					34	15	3	0	0	0	0.37585	1	18976	18976		14.405	14.405	1	1031900	+		16661	15870	9446	9447	20987	20987					-0.05371740959253657
IYDAAIDLF	9	Unmodified	_IYDAAIDLF_					0	0	0		ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	ENSG00000121879|ENST00000263967|PIK3CA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.26513671875	2	520.768583	1039.52261	0.28968	0.00015086	-1.1913	-0.0006204	-0.90163	-0.00046954	520.7675756454544	73.909	0.28917	73.961	73.771	74.06	0.052361					14	9	2	0	0	0	0.24913	1	18913	18913		7.9102	0	1	282980			16662	3015	9447	9448	20988	20988					0.00443231974804803
IYDDDLVVFR	10	Unmodified	_IYDDDLVVFR_					0	0	0			REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2	REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.88311767578125	3	418.883677	1253.6292	0.22235	9.3139E-05	0.34512	0.00014457	0.56747	0.0002377	418.8828917999832	40.77	1.0916	40.862	40.313	41.405	0.09267					112	40	5	0	0	0	0.35961	1	8701	8701		10.899	0.099449	1	1019100	+		16663	16679	9448	9449	20989	20989					0.012533624693105594
IYDFIQSYKI	10	Unmodified	_IYDFIQSYKI_					0	0	0		nc|ENSG00000051341|O75417-2|POLQ;ENSG00000051341|ENST00000264233|POLQ	nc|ENSG00000051341|O75417-2|POLQ	nc|ENSG00000051341|O75417-2|POLQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.7835693359375	3	430.564056	1288.67034	0.026965	1.161E-05	-1.6788	-0.00072284	-1.6519	-0.00071123	430.5637318541231	53.466	0.22878	53.457	53.329	53.558	-0.0096054					13	8	2	0	0	0	0.31401	1	12639	12639		10.151	6.5635	1	116690			16664	668	9449	9450	20990	20990					0.03755123508813085
IYDFIQSYKI	10	Unmodified	_IYDFIQSYKI_					0	0	0		nc|ENSG00000051341|O75417-2|POLQ;ENSG00000051341|ENST00000264233|POLQ	nc|ENSG00000051341|O75417-2|POLQ	nc|ENSG00000051341|O75417-2|POLQ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	430.564056	1288.67034	0.16082	6.9243E-05	-0.76658	-0.00033006	-0.60576	-0.00026082	430.5637151753349	53.192	0.13227	53.248	53.141	53.273	0.056259	-0.10407	0.00081184	NaN	10.151	7	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109110			16665	668	9449	9450							0.03755123508813085
IYDFYNSY	8	Unmodified	_IYDFYNSY_					0	0	0			REV__ENST00000543571.5_1_6:149981860-149982013:-|nuORF	REV__ENST00000543571.5_1_6:149981860-149982013:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2852783203125	2	542.73474	1083.45493	0.59671	0.00032386	0.218	0.00011832	0.81472	0.00044217	542.7348578043272	58.539	0.56522	58.63	58.418	58.983	0.091305					27	19	2	0	0	0	0.34092	1	14154	14154		13.508	5.5977	1	146760	+		16666	22148	9450	9451	20991	20991					-0.08346217956000146
IYDFYNSY	8	Unmodified	_IYDFYNSY_					0	0	0			REV__ENST00000543571.5_1_6:149981860-149982013:-|nuORF	REV__ENST00000543571.5_1_6:149981860-149982013:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	542.73474	1083.45493	0.7486	0.00040629	0.2825	0.00015332	1.0311	0.00055961	542.7348529374461	58.687	0.48035	58.673	58.496	58.977	-0.014267	0.021262	5.044E-05	NaN	8.5933	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248000	+		16667	22148	9450	9451							-0.08346217956000146
IYDIQVEVC	9	Unmodified	_IYDIQVEVC_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2639770507812	2	541.26535	1080.51615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.406	1	87.406	86.906	87.906	0								0	0	0	0.2489	1	23046	23046		6.7232	1.4925	1				16668	615	9451	9452	20992	20992					-0.02089029248213592
IYDKFIAQL	9	Unmodified	_IYDKFIAQL_					0	0	0		nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	nc|ENSG00000160783|Q6P1K2-4|PMF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8133544921875	2	555.813325	1109.6121	0.39457	0.00021931	-0.0072095	-4.0071E-06	0.38736	0.0002153	555.8132691741821	62.406	2.0635	62.503	62.175	64.238	0.096985					92	74	2	0	0	0	0.00078897	1	15378	15378		125.04	59.803	1	3352500			16669	5486	9452	9453	20993	20993					0.061674866541807205
IYDLLDAFF	9	Unmodified	_IYDLLDAFF_					0	0	0			REV__ENSG00000165704|ENST00000298556|HPRT1	REV__ENSG00000165704|ENST00000298556|HPRT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7808837890625	2	558.784233	1115.55391	0.49722	0.00027784	-0.068914	-3.8508E-05	0.4283	0.00023933	558.7848097209055	83.326	2.7553	83.399	82.651	85.406	0.073097					338	108	7	0	0	0	0.22883	2	21917	21853;21917		19.439	8.3245	1	29011000	+		16670	17259	9453	9454	20994;20995	20995					0.0007580500889616815
IYDPNLAFL	9	Unmodified	_IYDPNLAFL_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2843627929688	2	533.2844	1064.55425	0.47	0.00025064	0.32518	0.00017341	0.79517	0.00042405	533.2842349383251	80.497	0.77237	80.497	80.207	80.979	0					81	33	3	0	0	0	0.09064	1	20929	20929		56.177	36.92	1	820840			16671	8016	9454	9455	20996	20996					0.024552247287601858
IYDPNLAFL	9	Unmodified	_IYDPNLAFL_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2843627929688	2	533.2844	1064.55425	0.22304	0.00011894	-0.021837	-1.1645E-05	0.2012	0.0001073	533.2843527206995	80.491	0.78648	80.556	80.213	80.999	0.065094					56	31	2	0	0	0	0.041175	1	20907	20907		56.177	32.156	1	788680			16672	8016	9454	9455	20997	20997					0.024552247287601858
IYDPNLAFL	9	Unmodified	_IYDPNLAFL_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2843017578125	2	533.2844	1064.55425	0.47191	0.00025166	0.028104	1.4987E-05	0.50001	0.00026665	533.2842112719476	80.569	0.96051	80.542	80.265	81.225	-0.026817					74	37	3	0	0	0	0.12563	1	20937	20937		47.749	28.492	1	773710			16673	8016	9454	9455	20998	20998					0.024552247287601858
IYDSVKVYF	9	Unmodified	_IYDSVKVYF_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547869.1_1_12:98994914-98995303:+|nuORF;SLC25A3|p.R344Sfs*33|1|0.19|ENSG00000075415|chr12:98601465-98601466|-/C|frameshift_variant	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2969360351562	2	567.297507	1132.58046	-0.13378	-7.5892E-05	-0.93395	-0.00052983	-1.0677	-0.00060572	567.2968216627124	60.1	0.92605	60.1	59.787	60.713	0					98	32	4	0	0	0	0.0024096	2	14723	14674;14723		106.94	49.469	1	9539900			16674	1046	9455	9456	20999;21000	21000					0.019474939002293468
IYDSVKVYF	9	Unmodified	_IYDSVKVYF_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547869.1_1_12:98994914-98995303:+|nuORF;SLC25A3|p.R344Sfs*33|1|0.19|ENSG00000075415|chr12:98601465-98601466|-/C|frameshift_variant	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.296630859375	2	567.297507	1132.58046	-0.26729	-0.00015164	-0.75839	-0.00043023	-1.0257	-0.00058187	567.2969592862212	59.978	1.0364	60.073	59.741	60.778	0.095089					108	37	4	0	0	0	0.0013683	3	14631	14631;14684;14837		118.07	60.597	1	8744800			16675	1046	9455	9456	21001;21002;21003	21001					0.019474939002293468
IYDSVKVYF	9	Unmodified	_IYDSVKVYF_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547869.1_1_12:98994914-98995303:+|nuORF;SLC25A3|p.R344Sfs*33|1|0.19|ENSG00000075415|chr12:98601465-98601466|-/C|frameshift_variant	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2969970703125	2	567.297507	1132.58046	0.092491	5.247E-05	-0.77475	-0.00043952	-0.68226	-0.00038705	567.2969641223551	60.077	1.0437	60.065	59.714	60.757	-0.011486					101	34	4	0	0	0	0.0024096	5	14656	14637;14656;14701;14752;14875		106.94	58.594	1	8276400			16676	1046	9455	9456	21004;21005;21006;21007;21008	21005					0.019474939002293468
IYDTCPIKI	9	Carbamidomethyl (C)	_IYDTC(Carbamidomethyl (C))PIKI_	IYDTC(1)PIKI		IYDTC(71)PIKI		0	1	0			REV__ENSG00000196743|ENST00000357164|GM2A	REV__ENSG00000196743|ENST00000357164|GM2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.795166015625	2	561.796817	1121.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.573	1	69.551	69.051	70.051	-0.022087								0	0	0	0.016116	1	17575	17575		71.134	14.957	1		+		16677	18684	9456	9457	21009	21009	29				0.023155365398224603
IYDTCPIKI	9	Carbamidomethyl (C)	_IYDTC(Carbamidomethyl (C))PIKI_	IYDTC(1)PIKI		IYDTC(61)PIKI		0	1	0			REV__ENSG00000196743|ENST00000357164|GM2A	REV__ENSG00000196743|ENST00000357164|GM2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.795166015625	2	561.796817	1121.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.719	1	69.697	69.197	70.197	-0.022087								0	0	0	0.048469	1	17620	17620		61.357	21.408	1		+		16678	18684	9456	9457	21010	21010	29				0.023155365398224603
IYDYAIVLF	9	Unmodified	_IYDYAIVLF_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.8026733398438	2	558.802426	1115.5903	0.16706	9.3356E-05	-0.44006	-0.00024591	-0.27299	-0.00015255	558.8022897502971	93.873	0.65054	93.873	93.605	94.256	0					104	49	3	0	0	0	0.1669	1	25027	25027		28.487	10.352	1	306970			16679	1403	9457	9458	21011	21011					0.03712681905608406
IYDYAIVLF	9	Unmodified	_IYDYAIVLF_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8024291992188	2	558.802426	1115.5903	0.28119	0.00015713	-0.52957	-0.00029592	-0.24838	-0.0001388	558.8022010630601	93.758	0.68607	93.845	93.586	94.272	0.08667					120	51	3	0	0	0	0.24311	1	24989	24989		16.942	4.4107	1	407160			16680	1403	9457	9458	21012	21012					0.03712681905608406
IYDYAIVLF	9	Unmodified	_IYDYAIVLF_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.8025512695312	2	558.802426	1115.5903	0.37062	0.0002071	-0.70571	-0.00039435	-0.3351	-0.00018725	558.8021360209511	93.834	0.63935	93.834	93.597	94.237	-0.00051117					91	44	3	0	0	0	0.1669	1	25031	25031		28.487	10.352	1	380090			16681	1403	9457	9458	21013	21013					0.03712681905608406
IYEEEPFNF	9	Unmodified	_IYEEEPFNF_					0	0	0		CON__Q2YDI2;ENST00000481488.1_1_2:148695657-148695951:-|nuORF;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENSG00000115947|ENST00000392857|ORC4	CON__Q2YDI2;nc|ENSG00000115947|O43929-2|ORC4	nc|ENSG00000115947|O43929-2|ORC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.2666625976562	2	594.266404	1186.51826	0.54495	0.00032384	0.066355	3.9433E-05	0.6113	0.00036328	594.2663372900744	72.423	0.97188	72.423	72.048	73.02	0					104	35	4	0	0	0	9.2305E-05	3	18483	18436;18483;18525		142.08	113	1	1548700		+	16682	229;2690	9458	9459	21014;21015;21016	21015					-0.06754277238746909
IYEEEPFNF	9	Unmodified	_IYEEEPFNF_					0	0	0		CON__Q2YDI2;ENST00000481488.1_1_2:148695657-148695951:-|nuORF;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENSG00000115947|ENST00000392857|ORC4	CON__Q2YDI2;nc|ENSG00000115947|O43929-2|ORC4	nc|ENSG00000115947|O43929-2|ORC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.266845703125	2	594.266404	1186.51826	0.62637	0.00037223	-0.15123	-8.987E-05	0.47515	0.00028236	594.2662446006664	72.356	1.1186	72.412	72.084	73.202	0.056572					112	40	4	0	0	0	9.2305E-05	4	18460	18415;18460;18508;18569		142.08	105.95	1	1573700		+	16683	229;2690	9458	9459	21017;21018;21019;21020	21018					-0.06754277238746909
IYEEEPFNF	9	Unmodified	_IYEEEPFNF_					0	0	0		CON__Q2YDI2;ENST00000481488.1_1_2:148695657-148695951:-|nuORF;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENSG00000115947|ENST00000392857|ORC4	CON__Q2YDI2;nc|ENSG00000115947|O43929-2|ORC4	nc|ENSG00000115947|O43929-2|ORC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2670288085938	2	594.266404	1186.51826	0.52408	0.00031144	0.11505	6.8372E-05	0.63913	0.00037982	594.2663699230181	72.459	1.011	72.431	72.115	73.126	-0.028633					108	35	4	0	0	0	0.0013683	3	18448	18448;18499;18543		118.07	95.332	1	1652800		+	16684	229;2690	9458	9459	21021;21022;21023	21021					-0.06754277238746909
IYEEEPFNF	9	Unmodified	_IYEEEPFNF_					0	0	0		CON__Q2YDI2;ENST00000481488.1_1_2:148695657-148695951:-|nuORF;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENSG00000115947|ENST00000392857|ORC4	CON__Q2YDI2;nc|ENSG00000115947|O43929-2|ORC4	nc|ENSG00000115947|O43929-2|ORC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7532958984375	2	594.266404	1186.51826	0.495	0.00029416	-0.012406	-7.3722E-06	0.48259	0.00028679	594.2660139483315	73.209	0.083458	73.18	73.126	73.209	-0.029305					4	2	2	0	0	0	0.25202	1	18687	18687		10.824	2.9138	1	59041		+	16685	229;2690	9458	9459	21024	21024					-0.06754277238746909
IYEEISDPEE	10	Unmodified	_IYEEISDPEE_					0	0	0		nc|ENSG00000290708|Q7RTT3|SSX9P;nc|ENSG00000171483|Q7RTT6|SSX6P;ENSG00000268447|ENST00000596480|SSX2B;ENSG00000241476|ENST00000337502|SSX2;ENSG00000187754|ENST00000298181|SSX7;ENSG00000165584|ENST00000298396|SSX3;ENSG00000126752|ENST00000376919|SSX1	nc|ENSG00000290708|Q7RTT3|SSX9P	nc|ENSG00000290708|Q7RTT3|SSX9P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.5150451660156	3	408.515319	1222.52413	-9.236E-05	-3.773E-08	-0.51801	-0.00021161	-0.5181	-0.00021165	408.51490391795573	74.061	3.7331	74.114	71.398	75.131	0.052361					274	134	4	0	0	0	0.39745	1	18959	18959		1.9064	0	1	1359800			16686	3285	9459	9460	21025	21025					-0.07823223517743827
IYEESQQVF	9	Unmodified	_IYEESQQVF_					0	0	0		nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000587673.5_1_19:1109414-1111598:-|nuORF	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7723999023438	2	571.771854	1141.52915	0.21911	0.00012528	-0.41605	-0.00023788	-0.19694	-0.0001126	571.7711631668208	80.373	2.5866	80.373	79.495	82.081	0					162	107	3	0	0	0	0.31763	1	20832	20832		6.2058	0.47393	1	475580			16687	798	9460	9461	21026	21026					-0.03594874864461417
IYEIIDNSQGF	11	Unmodified	_IYEIIDNSQGF_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8170776367188	2	649.816793	1297.61903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.73	1	69.73	69.23	70.23	0								0	0	0	5.1086E-34	1	17636	17636		190.03	157.73	1				16688	3842	9461	9462	21027	21027					-0.017872452559231533
IYEIIDNSQGF	11	Unmodified	_IYEIIDNSQGF_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8168334960938	2	649.816793	1297.61903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.9	1	69.9	69.4	70.4	0								0	0	0	2.2512E-10	1	17688	17688		125.18	103.64	1				16689	3842	9461	9462	21028	21028					-0.017872452559231533
IYEIIDNSQGF	11	Unmodified	_IYEIIDNSQGF_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.817138671875	2	649.816793	1297.61903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.697	1	69.764	69.264	70.264	0.066048								0	0	0	1.8601E-34	1	17621	17621		202.97	168.04	1				16690	3842	9461	9462	21029	21029					-0.017872452559231533
IYEIIDNSQGF	11	Unmodified	_IYEIIDNSQGF_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.81689453125	2	649.816793	1297.61903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.855	1	69.921	69.421	70.421	0.066048								0	0	0	1.1574E-05	1	17669	17669		102.55	83.292	1				16691	3842	9461	9462	21030	21030					-0.017872452559231533
IYEIIDNSQGF	11	Unmodified	_IYEIIDNSQGF_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.81689453125	2	649.816793	1297.61903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.736	1	69.714	69.214	70.214	-0.022087								0	0	0	1.2102E-24	1	17625	17625		165.58	134.95	1				16692	3842	9461	9462	21031	21031					-0.017872452559231533
IYEIIDNSQGF	11	Unmodified	_IYEIIDNSQGF_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8167114257812	2	649.816793	1297.61903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.913	1	69.89	69.39	70.39	-0.022087								0	0	0	1.2102E-24	1	17679	17679		165.58	127.61	1				16693	3842	9461	9462	21032	21032					-0.017872452559231533
IYELAAEISR	10	Unmodified	_IYELAAEISR_					0	0	0			REV__ENSG00000150457|ENST00000382592|LATS2	REV__ENSG00000150457|ENST00000382592|LATS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3057861328125	2	582.816596	1163.61864	0.44505	0.00025939	-0.49254	-0.00028706	-0.047483	-2.7674E-05	582.8164460376921	44.554	0.59921	44.629	44.362	44.962	0.075047					30	21	2	0	0	0	0.31165	1	9967	9967		15.847	2.8047	1	347580	+		16694	16498	9462	9463	21033	21033					0.04337379814865017
IYELAAEISR	10	Unmodified	_IYELAAEISR_					0	0	0			REV__ENSG00000150457|ENST00000382592|LATS2	REV__ENSG00000150457|ENST00000382592|LATS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	582.816596	1163.61864	0.56562	0.00032965	-0.76003	-0.00044296	-0.19441	-0.00011331	582.816246001204	44.674	0.49784	44.674	44.493	44.991	0	0.023811	-0.00015077	NaN	10.824	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311760	+		16695	16498	9462	9463							0.04337379814865017
IYELAAEISR	10	Unmodified	_IYELAAEISR_					0	0	0			REV__ENSG00000150457|ENST00000382592|LATS2	REV__ENSG00000150457|ENST00000382592|LATS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	582.816596	1163.61864	0.47016	0.00027402	-0.57092	-0.00033274	-0.10076	-5.8723E-05	582.8165680260099	44.578	0.42956	44.646	44.437	44.867	0.068569	-0.0035301	6.9669E-05	NaN	10.824	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331210	+		16696	16498	9462	9463							0.04337379814865017
IYELEKLWTL	10	Unmodified	_IYELEKLWTL_					0	0	0		ENST00000476623.1_1_7:23347480-23349159:+|nuORF;ENSG00000156928|ENST00000466681|MALSU1	ENST00000476623.1_1_7:23347480-23349159:+|nuORF	ENST00000476623.1_1_7:23347480-23349159:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.2475280761719	3	436.579706	1306.71729	0.196	8.557E-05	-2.6784	-0.0011693	-2.4824	-0.0010838	436.9125457324569	64.694	0.35478	64.786	64.582	64.937	0.09288					12	12	2	0	0	0	0.32051	1	16127	16127		3.8763	0.28366	1	75549			16697	5266	9463	9464	21034	21034					0.07619983059953483
IYELMQTEF	9	Oxidation (M)	_IYELM(Oxidation (M))QTEF_		IYELM(1)QTEF		IYELM(100)QTEF	0	0	1		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.2762451171875	2	595.275915	1188.53728	0.5157	0.00030699	-0.46567	-0.0002772	0.050037	2.9786E-05	595.2756370039518	63.365	0.70731	63.365	63.039	63.746	0					55	25	3	0	0	0	0.0028542	1	15699	15699		103.42	76.536	1	528980			16698	6477	9464	9465	21035	21035		756			-0.049450639393853635
IYELMQTEF	9	Oxidation (M)	_IYELM(Oxidation (M))QTEF_		IYELM(1)QTEF		IYELM(83)QTEF	0	0	1		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.27587890625	2	595.275915	1188.53728	0.56996	0.00033928	-0.31453	-0.00018723	0.25543	0.00015205	595.2756378495807	63.261	0.69644	63.357	62.985	63.681	0.095722					56	24	3	0	0	0	0.0073901	1	15638	15638		83.429	49.326	1	627560			16699	6477	9464	9465	21036	21036		756			-0.049450639393853635
IYELMQTEF	9	Oxidation (M)	_IYELM(Oxidation (M))QTEF_		IYELM(1)QTEF		IYELM(100)QTEF	0	0	1		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.2759399414062	2	595.275915	1188.53728	0.49551	0.00029497	-0.32767	-0.00019505	0.16784	9.9911E-05	595.2756865032803	63.438	0.75617	63.43	62.963	63.719	-0.0085564					65	26	4	0	0	0	0.0028542	1	15674	15674		103.42	69.317	1	495540			16700	6477	9464	9465	21037	21037		756			-0.049450639393853635
IYEMILHEF	9	Oxidation (M)	_IYEM(Oxidation (M))ILHEF_		IYEM(1)ILHEF		IYEM(120)ILHEF	0	0	1		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.7933959960938	2	605.794275	1209.574	0.48592	0.00029437	-0.23324	-0.00014129	0.25269	0.00015308	605.793818825253	63.063	0.70026	63.063	62.832	63.532	0					79	25	4	0	0	0	0.0013036	3	15584	15584;15620;15631		118.89	107.19	1	1334000			16701	368	9465	9466	21038;21039;21040	21038		34			-0.022407673227689884
IYEMILHEF	9	Oxidation (M)	_IYEM(Oxidation (M))ILHEF_		IYEM(1)ILHEF		IYEM(120)ILHEF	0	0	1		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.7940673828125	2	605.794275	1209.574	0.56847	0.00034438	-0.45551	-0.00027595	0.11296	6.8429E-05	605.7937218407316	62.946	0.71304	63.042	62.764	63.477	0.095722					71	25	4	0	0	0	0.0013036	4	15548	15526;15548;15579;15594		118.89	96.158	1	1480500			16702	368	9465	9466	21041;21042;21043;21044	21042		34			-0.022407673227689884
IYEMILHEF	9	Oxidation (M)	_IYEM(Oxidation (M))ILHEF_		IYEM(1)ILHEF		IYEM(120)ILHEF	0	0	1		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.7943115234375	2	605.794275	1209.574	0.32698	0.00019808	-0.26011	-0.00015757	0.066866	4.0507E-05	605.7938175762062	63.092	1.1861	63.084	62.804	63.99	-0.0085526					78	42	3	0	0	0	0.0013036	2	15567	15567;15619		118.89	93.495	1	1702300			16703	368	9465	9466	21045;21046	21045		34			-0.022407673227689884
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.3001098632812	2	595.30005	1188.58555	0.18597	0.00011071	0.18116	0.00010784	0.36713	0.00021855	595.2999225918852	96.689	1.252	96.689	96.343	97.595	0					338	121	4	0	0	0	0.0042138	5	25821	25778;25821;25858;25895;25937		92.653	92.653	1	1935400			16704	1306	9466	9467	21047;21048;21049;21050;21051	21048					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.2999877929688	2	595.30005	1188.58555	0.34176	0.00020345	0.037521	2.2336E-05	0.37928	0.00022578	595.2998294452353	96.581	1.3172	96.652	96.306	97.623	0.070465					351	132	4	0	0	0	0.00011048	5	25786	25747;25786;25822;25858;25899		139.14	139.14	1	2471500			16705	1306	9466	9467	21052;21053;21054;21055;21056	21053					-0.0012020223716717737
IYEPNFIFF	9	Unmodified	_IYEPNFIFF_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.30029296875	2	595.30005	1188.58555	0.43361	0.00025813	0.0068258	4.0634E-06	0.44043	0.00026219	595.2998372906223	96.719	1.1237	96.714	96.335	97.458	-0.0055466					356	109	4	0	0	0	0.00033443	6	25827	25792;25827;25866;25901;25939;25977		131.27	131.27	1	3291300			16706	1306	9466	9467	21057;21058;21059;21060;21061;21062	21058					-0.0012020223716717737
IYEPVIRLK	9	Unmodified	_IYEPVIRLK_					0	0	0		LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant;ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.3117065429688	2	565.850242	1129.68593	0.77444	0.00043822	-0.74693	-0.00042265	0.027512	1.5568E-05	565.8498277768828	48.088	0.34113	48.136	48.049	48.39	0.047523					19	12	2	0	0	0	0.25066	1	10989	10989		11.64	0.81637	1	367560			16707	4540	9467	9468	21063	21063					0.126274548164929
IYEPYLAMF	9	Oxidation (M)	_IYEPYLAM(Oxidation (M))F_		IYEPYLAM(1)F		IYEPYLAM(60)F	0	0	1		ENSG00000144481|ENST00000324695|TRPM8;nc|ENSG00000144481|Q7Z2W7-4|TRPM8;ENST00000444298.5_1_2:234856214-234923253:+|nuORF	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.7777709960938	2	581.778093	1161.54163	0.20882	0.00012149	0.11384	6.623E-05	0.32266	0.00018772	581.7778551887086	76.36	0.58527	76.36	76.168	76.754	0					50	20	3	0	0	0	0.029841	2	19665	19665;19714		60.39	48.215	1	376800			16708	4590	9468	9469	21064;21065	21064		580			-0.032675547258122606
IYEPYLAMF	9	Oxidation (M)	_IYEPYLAM(Oxidation (M))F_		IYEPYLAM(1)F		IYEPYLAM(67)F	0	0	1		ENSG00000144481|ENST00000324695|TRPM8;nc|ENSG00000144481|Q7Z2W7-4|TRPM8;ENST00000444298.5_1_2:234856214-234923253:+|nuORF	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7783203125	2	581.778093	1161.54163	0.10621	6.1789E-05	0.59482	0.00034606	0.70103	0.00040784	581.777957942825	76.361	0.66967	76.414	76.161	76.831	0.053413					46	23	3	0	0	0	0.017871	2	19652	19652;19717		67.344	49.209	1	336980			16709	4590	9468	9469	21066;21067	21066		580			-0.032675547258122606
IYEPYLAMF	9	Oxidation (M)	_IYEPYLAM(Oxidation (M))F_		IYEPYLAM(1)F		IYEPYLAM(78)F	0	0	1		ENSG00000144481|ENST00000324695|TRPM8;nc|ENSG00000144481|Q7Z2W7-4|TRPM8;ENST00000444298.5_1_2:234856214-234923253:+|nuORF	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.7788696289062	2	581.778093	1161.54163	0.41409	0.00024091	0.15568	9.0571E-05	0.56977	0.00033148	581.7780076009368	76.407	0.61407	76.376	76.19	76.804	-0.031479					55	22	3	0	0	0	0.010938	2	19672	19672;19725		77.984	53.103	1	406720			16710	4590	9468	9469	21068;21069	21068		580			-0.032675547258122606
IYEQVFAKL	9	Unmodified	_IYEQVFAKL_					0	0	0		ENST00000555903.1_1_14:90745249-90755225:-|nuORF;ENSG00000119720|ENST00000354366|NRDE2	ENST00000555903.1_1_14:90745249-90755225:-|nuORF	ENST00000555903.1_1_14:90745249-90755225:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8129272460938	2	555.813325	1109.6121	0.055746	3.0984E-05	-0.4886	-0.00027157	-0.43285	-0.00024058	555.812937408217	59.715	0.52718	59.715	59.508	60.035	0					50	18	4	0	0	0	0.0060093	1	14554	14554		75.571	26.016	1	1102400			16711	2902	9469	9470	21070	21070					0.061674866541807205
IYEQVFAKL	9	Unmodified	_IYEQVFAKL_					0	0	0		ENST00000555903.1_1_14:90745249-90755225:-|nuORF;ENSG00000119720|ENST00000354366|NRDE2	ENST00000555903.1_1_14:90745249-90755225:-|nuORF	ENST00000555903.1_1_14:90745249-90755225:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8130493164062	2	555.813325	1109.6121	0.039449	2.1927E-05	-0.36348	-0.00020203	-0.32403	-0.0001801	555.8130089108373	59.61	0.60871	59.705	59.438	60.047	0.095089					58	21	4	0	0	0	0.052657	1	14547	14547		67.081	25.125	1	1184600			16712	2902	9469	9470	21071	21071					0.061674866541807205
IYEQVFAKL	9	Unmodified	_IYEQVFAKL_					0	0	0		ENST00000555903.1_1_14:90745249-90755225:-|nuORF;ENSG00000119720|ENST00000354366|NRDE2	ENST00000555903.1_1_14:90745249-90755225:-|nuORF	ENST00000555903.1_1_14:90745249-90755225:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8131713867188	2	555.813325	1109.6121	0.26136	0.00014527	-0.45644	-0.0002537	-0.19508	-0.00010843	555.813032287864	59.767	0.59771	59.755	59.459	60.057	-0.011486					48	20	3	0	0	0	0.11018	1	14556	14556		53.404	20.618	1	1120700			16713	2902	9469	9470	21072	21072					0.061674866541807205
IYERIPGDF	9	Unmodified	_IYERIPGDF_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2850341796875	2	555.284931	1108.55531	0.10908	6.0571E-05	-0.30599	-0.00016991	-0.19691	-0.00010934	555.2846983064165	60.096	1.5433	60.084	59.372	60.916	-0.011486					136	55	4	0	0	0	0.15219	1	14526	14526		30.637	3.7529	1	6674400			16714	1216	9470	9471	21073	21073					0.0053743909768400044
IYFASLNVARE	11	Unmodified	_IYFASLNVARE_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ABCA10|p.S690Qfs*2|1|0.25|ENSG00000154263|chr17:69190421-69190421|A/-|frameshift_variant;nc|ENSG00000154263|Q8WWZ4-5|ABCA10;nc|ENSG00000154263|Q8WWZ4-4|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.23773193359375	3	428.231189	1281.67174	-0.1741	-7.4557E-05	-0.29201	-0.00012505	-0.46612	-0.00019961	428.2308988172969	22.366	0.53882	22.266	22.017	22.556	-0.10034					36	19	2	0	0	0	0.329	1	3081	3081		4.7159	0	1	143120			16715	5117	9471	9472	21074	21074					0.04216757597555443
IYFASLNVARE	11	Unmodified	_IYFASLNVARE_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ABCA10|p.S690Qfs*2|1|0.25|ENSG00000154263|chr17:69190421-69190421|A/-|frameshift_variant;nc|ENSG00000154263|Q8WWZ4-5|ABCA10;nc|ENSG00000154263|Q8WWZ4-4|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2378234863281	3	428.231189	1281.67174	-0.2607	-0.00011164	0.3623	0.00015515	0.1016	4.3509E-05	428.2311203867541	22.335	0.63974	22.285	22.005	22.645	-0.049377					48	21	3	0	0	0	0.329	1	3059	3059		4.7159	0.87001	1	138250			16716	5117	9471	9472	21075	21075					0.04216757597555443
IYFASVSETF	10	Unmodified	_IYFASVSETF_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.7627563476562	2	582.284597	1162.55464	0.62432	0.00036353	0.76323	0.00044442	1.3875	0.00080795	582.2850975938042	74.483	0.45191	74.483	74.313	74.765	0					22	15	2	0	0	0	0.10907	1	19098	19098		49.933	36.027	1	236250			16717	886	9472	9473	21076	21076					-0.02013400342048044
IYFASVSETF	10	Unmodified	_IYFASVSETF_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.2683715820312	2	582.284597	1162.55464	0.25812	0.0001503	1.1509	0.00067013	1.409	0.00082043	582.2853167758999	74.485	0.40439	74.537	74.353	74.758	0.052368					24	13	3	0	0	0	0.25875	1	19043	19043		32.305	13.049	1	322590			16718	886	9472	9473	21077	21077					-0.02013400342048044
IYFASVSETF	10	Unmodified	_IYFASVSETF_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	582.284597	1162.55464	0.49647	0.00028908	0.41623	0.00024236	0.9127	0.00053145	582.2849025473828	74.619	0.39816	74.588	74.358	74.756	-0.030663	0.05192	-0.00050269	NaN	49.933	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325730			16719	886	9472	9473							-0.02013400342048044
IYFDGDFGHF	10	Unmodified	_IYFDGDFGHF_					0	0	0		nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.2667846679688	2	609.266739	1216.51892	0.39453	0.00024038	-0.22777	-0.00013877	0.16677	0.0001016	609.2665573266455	70.22	0.63305	70.22	69.972	70.605	0					50	22	3	0	0	0	0.023345	1	17822	17822		68.081	54.175	1	462800			16720	12833	9473	9474	21078	21078					-0.08067437799059007
IYFDGDFGHF	10	Unmodified	_IYFDGDFGHF_					0	0	0		nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.2669677734375	2	609.266739	1216.51892	0.38862	0.00023677	-0.16568	-0.00010094	0.22295	0.00013583	609.2666027434934	70.235	0.55649	70.301	70.051	70.607	0.06604					52	19	4	0	0	0	0.2266	1	17813	17813		41.84	36.108	1	424470			16721	12833	9473	9474	21079	21079					-0.08067437799059007
IYFDGDFGHF	10	Unmodified	_IYFDGDFGHF_					0	0	0		nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	nc|ENSG00000168827|Q96RP9-2|GFM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.266845703125	2	609.266739	1216.51892	0.33144	0.00020193	0.01069	6.5133E-06	0.34213	0.00020845	609.2666634362594	70.331	0.75848	70.306	70.015	70.773	-0.024872					54	26	3	0	0	0	0.20505	1	17815	17815		47.749	42.017	1	569910			16722	12833	9473	9474	21080	21080					-0.08067437799059007
IYFDIWVSI	9	Unmodified	_IYFDIWVSI_					0	0	0		GGCX|p.D614Wfs*7|1|0.08|ENSG00000115486|chr2:85550970-85550973|GGTC/-|frameshift_variant;ENSG00000115486|ENST00000233838|GGCX;nc|ENSG00000115486|P38435-2|GGCX	GGCX|p.D614Wfs*7|1|0.08|ENSG00000115486|chr2:85550970-85550973|GGTC/-|frameshift_variant	GGCX|p.D614Wfs*7|1|0.08|ENSG00000115486|chr2:85550970-85550973|GGTC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.7796630859375	2	578.307875	1154.6012	0.32236	0.00018642	-2.4699	-0.0014283	-2.1475	-0.0012419	578.3061218476887	72.815	0.32836	72.869	72.789	73.118	0.053833					15	11	2	0	0	0	0.23783	1	18622	18622		18.135	2.2878	1	60559			16723	2652	9474	9475	21081	21081					0.03008084279895229
IYFEYSHAF	9	Unmodified	_IYFEYSHAF_					0	0	0		MSH3|p.R938Yfs*14|1|0.07|ENSG00000113318|chr5:80813738-80813739|-/TTATTGTACCAGA|frameshift_variant;ENSG00000113318|ENST00000265081|MSH3	MSH3|p.R938Yfs*14|1|0.07|ENSG00000113318|chr5:80813738-80813739|-/TTATTGTACCAGA|frameshift_variant	MSH3|p.R938Yfs*14|1|0.07|ENSG00000113318|chr5:80813738-80813739|-/TTATTGTACCAGA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.7716674804688	2	588.771657	1175.52876	0.54886	0.00032315	-0.18692	-0.00011006	0.36193	0.0002131	588.7714273473849	60.496	0.8208	60.496	60.202	61.022	0					84	29	4	0	0	0	8.7544E-17	3	14804	14757;14804;14849		216.59	178.61	1	5701500			16724	2492	9475	9476	21082;21083;21084	21083					-0.05198249793670584
IYFEYSHAF	9	Unmodified	_IYFEYSHAF_					0	0	0		MSH3|p.R938Yfs*14|1|0.07|ENSG00000113318|chr5:80813738-80813739|-/TTATTGTACCAGA|frameshift_variant;ENSG00000113318|ENST00000265081|MSH3	MSH3|p.R938Yfs*14|1|0.07|ENSG00000113318|chr5:80813738-80813739|-/TTATTGTACCAGA|frameshift_variant	MSH3|p.R938Yfs*14|1|0.07|ENSG00000113318|chr5:80813738-80813739|-/TTATTGTACCAGA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.771484375	2	588.771657	1175.52876	0.41818	0.00024621	-0.036533	-2.151E-05	0.38165	0.0002247	588.7714987168846	60.402	0.79731	60.497	60.211	61.008	0.095089					87	28	4	0	0	0	5.411E-24	3	14772	14723;14772;14829		239.41	203.37	1	4565300			16725	2492	9475	9476	21085;21086;21087	21086					-0.05198249793670584
IYFEYSHAF	9	Unmodified	_IYFEYSHAF_					0	0	0		MSH3|p.R938Yfs*14|1|0.07|ENSG00000113318|chr5:80813738-80813739|-/TTATTGTACCAGA|frameshift_variant;ENSG00000113318|ENST00000265081|MSH3	MSH3|p.R938Yfs*14|1|0.07|ENSG00000113318|chr5:80813738-80813739|-/TTATTGTACCAGA|frameshift_variant	MSH3|p.R938Yfs*14|1|0.07|ENSG00000113318|chr5:80813738-80813739|-/TTATTGTACCAGA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.7717895507812	2	588.771657	1175.52876	0.67064	0.00039486	-0.34143	-0.00020103	0.32921	0.00019383	588.7713557375425	60.532	0.74405	60.523	60.2	60.944	-0.0094566					91	27	4	0	0	0	1.9541E-11	3	14816	14762;14816;14870		196.94	162.84	1	4667800			16726	2492	9475	9476	21088;21089;21090	21089					-0.05198249793670584
IYFGDPQIF	9	Unmodified	_IYFGDPQIF_					0	0	0		GGT7|p.Q511Lfs*68|1|0.09|ENSG00000131067|chr20:34852210-34852211|-/TCTAGTATAAGGAA|frameshift_variant;ENSG00000131067|ENST00000336431|GGT7;nc|ENSG00000131067|Q9UJ14-4|GGT7;nc|ENSG00000131067|Q9UJ14-5|GGT7	GGT7|p.Q511Lfs*68|1|0.09|ENSG00000131067|chr20:34852210-34852211|-/TCTAGTATAAGGAA|frameshift_variant	GGT7|p.Q511Lfs*68|1|0.09|ENSG00000131067|chr20:34852210-34852211|-/TCTAGTATAAGGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2765502929688	2	550.276575	1098.5386	0.41007	0.00022565	0.70978	0.00039058	1.1199	0.00061623	550.2769273268561	82.046	0.97045	82.046	81.412	82.383	0					65	37	4	0	0	0	0.18208	1	21404	21404		26.268	5.3969	1	345560			16727	3541	9476	9477	21091	21091					-0.0067306178827948315
IYFGDPQIF	9	Unmodified	_IYFGDPQIF_					0	0	0		GGT7|p.Q511Lfs*68|1|0.09|ENSG00000131067|chr20:34852210-34852211|-/TCTAGTATAAGGAA|frameshift_variant;ENSG00000131067|ENST00000336431|GGT7;nc|ENSG00000131067|Q9UJ14-4|GGT7;nc|ENSG00000131067|Q9UJ14-5|GGT7	GGT7|p.Q511Lfs*68|1|0.09|ENSG00000131067|chr20:34852210-34852211|-/TCTAGTATAAGGAA|frameshift_variant	GGT7|p.Q511Lfs*68|1|0.09|ENSG00000131067|chr20:34852210-34852211|-/TCTAGTATAAGGAA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	550.276575	1098.5386	0.26756	0.00014723	1.1925	0.0006562	1.46	0.00080343	550.2770218580483	81.952	1.1094	82.021	81.265	82.374	0.068993	-0.0060833	0.0002104	NaN	26.268	95	50	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382940			16728	3541	9476	9477							-0.0067306178827948315
IYFGDPQIF	9	Unmodified	_IYFGDPQIF_					0	0	0		GGT7|p.Q511Lfs*68|1|0.09|ENSG00000131067|chr20:34852210-34852211|-/TCTAGTATAAGGAA|frameshift_variant;ENSG00000131067|ENST00000336431|GGT7;nc|ENSG00000131067|Q9UJ14-4|GGT7;nc|ENSG00000131067|Q9UJ14-5|GGT7	GGT7|p.Q511Lfs*68|1|0.09|ENSG00000131067|chr20:34852210-34852211|-/TCTAGTATAAGGAA|frameshift_variant	GGT7|p.Q511Lfs*68|1|0.09|ENSG00000131067|chr20:34852210-34852211|-/TCTAGTATAAGGAA|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	550.276575	1098.5386	0.46354	0.00025508	1.3616	0.00074928	1.8252	0.0010044	550.2770000514133	82.037	0.99168	82.013	81.351	82.343	-0.02404	-0.01352	0.00039656	NaN	26.268	74	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399940			16729	3541	9476	9477							-0.0067306178827948315
IYFIFQYWI	9	Unmodified	_IYFIFQYWI_					0	0	0			REV__ENST00000466187.2_1_10:70105306-70105504:-|nuORF	REV__ENST00000466187.2_1_10:70105306-70105504:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.8396606445312	2	646.839342	1291.66413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.016	1	23.943	23.443	24.443	-0.072559								0	0	0	0.2672	1	3625	3625		0.52476	0	1		+		16730	21282	9477	9478	21092	21092					0.029966500679392993
IYFIPIPYGLF	11	Unmodified	_IYFIPIPYGLF_					0	0	0			REV__ENSG00000176198|ENST00000641082|OR11H4	REV__ENSG00000176198|ENST00000641082|OR11H4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.289794921875	3	448.253042	1341.7373	0.20283	9.092E-05	-0.13246	-5.9375E-05	0.070373	3.1545E-05	448.2536430614384	52.069	0.76195	52.119	51.817	52.579	0.050571					30	27	2	0	0	0	0.3303	1	12159	12159		8.4443	0	1	121060	+		16731	17926	9478	9479	21093	21093					0.08009778790551536
IYFIPIPYGLF	11	Unmodified	_IYFIPIPYGLF_					0	0	0			REV__ENSG00000176198|ENST00000641082|OR11H4	REV__ENSG00000176198|ENST00000641082|OR11H4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	448.253042	1341.7373	0.064863	2.9075E-05	-1.053	-0.00047199	-0.9881	-0.00044292	448.25309546284836	52.332	0.76043	52.331	51.902	52.663	-0.00080872	0.10606	-0.00041047	NaN	12.175	38	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161650	+		16732	17926	9478	9479							0.08009778790551536
IYFIVMDPF	9	Unmodified	_IYFIVMDPF_					0	0	0		SCN9A|p.M1532*|1|0.27|ENSG00000169432|chr2:166204135-166204135|T/-|frameshift_variant;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	SCN9A|p.M1532*|1|0.27|ENSG00000169432|chr2:166204135-166204135|T/-|frameshift_variant	SCN9A|p.M1532*|1|0.27|ENSG00000169432|chr2:166204135-166204135|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3531494140625	2	572.791004	1143.56745	0.34863	0.00019969	0.83742	0.00047967	1.1861	0.00067936	572.7916955923382	71.693	1.3691	71.666	71.506	72.875	-0.027275					81	48	2	0	0	0	0.23783	1	18519	18519		18.135	0	1	224970			16733	6358	9479	9480	21094	21094					0.0014133951647181675
IYFKAQWK	8	Unmodified	_IYFKAQWK_					0	0	0		CON__Q9TTE1;CON__A2I7N1	CON__Q9TTE1	CON__Q9TTE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7937622070312	2	542.302927	1082.5913	0.19992	0.00010842	0.66994	0.00036331	0.86986	0.00047173	542.303277396035	14.211	0.4927	14.106	13.961	14.454	-0.10466					29	16	2	0	0	0	0.34408	1	659	659		2.3027	0	1	86183		+	16734	198	9480	9481	21095	21095					0.053309410651763756
IYFKKPLNI	9	Unmodified	_IYFKKPLNI_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.3477172851562	2	568.347335	1134.68012	0.54044	0.00030716	0.2573	0.00014623	0.79774	0.00045339	568.347346240739	47.258	0.72088	47.258	47.024	47.745	0					60	25	3	0	0	0	0.0015545	2	10695	10695;10743		115.69	67.346	1	1951300			16735	562	9481	9482	21096;21097	21096					0.11816356304825604
IYFKKPLNI	9	Unmodified	_IYFKKPLNI_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.3472290039062	2	568.347335	1134.68012	0.3401	0.00019329	0.43079	0.00024484	0.77089	0.00043813	568.3474705424796	47.218	0.82701	47.27	47.014	47.841	0.052574					61	30	3	0	0	0	0.0022761	2	10666	10666;10717		108	59.651	1	2064100			16736	562	9481	9482	21098;21099	21098					0.11816356304825604
IYFKKPLNI	9	Unmodified	_IYFKKPLNI_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.3475341796875	2	568.347335	1134.68012	0.88399	0.00050241	-0.0037319	-2.121E-06	0.88026	0.00050029	568.3471371949796	47.253	0.77545	47.308	47.006	47.782	0.054375					73	28	4	0	0	0	0.0015545	2	10718	10670;10718		115.69	67.346	1	1983100			16737	562	9481	9482	21100;21101	21101					0.11816356304825604
IYFKKPLNIYF	11	Unmodified	_IYFKKPLNIYF_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.9457702636719	3	482.611229	1444.81186	0.36863	0.00017791	-0.17852	-8.6158E-05	0.19011	9.1749E-05	482.611114986321	63.474	0.89104	63.57	63.282	64.173	0.095726					73	31	3	0	0	0	0.18116	1	15787	15787		32.898	25.421	1	421720			16738	562	9482	9483	21102	21102					0.10724541601916826
IYFKKPLNIYF	11	Unmodified	_IYFKKPLNIYF_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.6113586425781	3	482.611229	1444.81186	0.45977	0.00022189	-0.34373	-0.00016589	0.11604	5.6003E-05	482.6110757774113	63.734	1.1187	63.725	63.325	64.444	-0.0085564					81	40	3	0	0	0	0.2331	2	15824	15774;15824		28.234	23.186	1	558680			16739	562	9482	9483	21103;21104	21104					0.10724541601916826
IYFKKPLNIYF	11	Unmodified	_IYFKKPLNIYF_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	482.611229	1444.81186	0.33536	0.00016185	-0.13561	-6.5449E-05	0.19975	9.6399E-05	482.6111482483599	63.589	0.81516	63.589	63.315	64.13	0	-0.038841	0.00011585	NaN	32.898	63	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405940			16740	562	9482	9483							0.10724541601916826
IYFLHPDAF	9	Unmodified	_IYFLHPDAF_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7853393554688	2	561.784567	1121.55458	0.2906	0.00016326	0.77382	0.00043472	1.0644	0.00059798	561.7849037945882	67.805	0.45091	67.805	67.623	68.074	0					42	15	4	0	0	0	0.000573	1	17048	17048		123.1	94.609	1	625580			16741	7690	9483	9484	21105	21105					-0.0013335555140656652
IYFLHPDAF	9	Unmodified	_IYFLHPDAF_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7847290039062	2	561.784567	1121.55458	0.22377	0.00012571	1.0319	0.00057969	1.2556	0.0007054	561.7847903282299	67.84	0.66896	67.824	67.506	68.175	-0.016296					56	23	4	0	0	0	0.089551	1	17048	17048		53.576	33.122	1	694880			16742	7690	9483	9484	21106	21106					-0.0013335555140656652
IYFLHPDAF	9	Unmodified	_IYFLHPDAF_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.784567	1121.55458	0.51765	0.00029081	0.7846	0.00044078	1.3023	0.00073158	561.7848147829495	67.701	0.59297	67.779	67.576	68.169	0.078041	-0.023492	-7.4706E-05	NaN	123.1	53	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	541020			16743	7690	9483	9484							-0.0013335555140656652
IYFLNTNNAF	10	Unmodified	_IYFLNTNNAF_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.80517578125	2	608.803488	1215.59242	0.70019	0.00042628	1.4795	0.00090074	2.1797	0.001327	608.80467948568	77.474	1.8977	77.474	77.117	79.015	0					149	70	4	0	0	0	6.3952E-29	5	20012	19943;19989;20012;20064;20114		240.41	194.71	1	4160800			16744	1455	9484	9485	21107;21108;21109;21110;21111	21109					-0.0067488935658275295
IYFLNTNNAF	10	Unmodified	_IYFLNTNNAF_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.80517578125	2	608.803488	1215.59242	0.71492	0.00043524	1.3126	0.00079912	2.0275	0.0012344	608.8045723386209	77.441	2.0757	77.497	77.12	79.195	0.05542					156	76	4	0	0	0	1.2825E-38	5	19993	19918;19980;19993;20044;20094		257.82	192.59	1	5158100			16745	1455	9484	9485	21112;21113;21114;21115;21116	21114					-0.0067488935658275295
IYFLNTNNAF	10	Unmodified	_IYFLNTNNAF_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8048095703125	2	608.803488	1215.59242	0.73465	0.00044726	1.5353	0.00093469	2.2699	0.0013819	608.8047231017946	77.526	1.3543	77.494	77.125	78.479	-0.031334					141	49	4	0	0	0	6.273799999999999E-50	5	20022	19932;19978;20022;20070;20124		275.79	200.86	1	4521000			16746	1455	9484	9485	21117;21118;21119;21120;21121	21119					-0.0067488935658275295
IYFLPHCF	8	Unmodified	_IYFLPHCF_					0	0	0		ENST00000466187.2_1_10:70105306-70105504:-|nuORF	ENST00000466187.2_1_10:70105306-70105504:-|nuORF	ENST00000466187.2_1_10:70105306-70105504:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3473510742188	2	520.257131	1038.49971	0.39639	0.00020622	0.84562	0.00043994	1.242	0.00064616	520.7591018395601	72.899	0.60612	72.952	72.459	73.065	0.053833					39	21	3	0	0	0	0.31651	1	18456	18456		24.21	13.095	1	110700			16747	10809	9485	9486	21122	21122					-0.018000656236608847
IYFLWVIF	8	Unmodified	_IYFLWVIF_					0	0	0			REV__ENST00000246024.6_1_20:7960815-7961187:-|nuORF	REV__ENST00000246024.6_1_20:7960815-7961187:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2914428710938	2	550.812596	1099.61064	0.42976	0.00023671	2.4984	0.0013761	2.9281	0.0016129	550.8139252963964	32.916	0.41275	32.971	32.73	33.143	0.055309					23	14	2	0	0	0	0.34147	1	6319	6319		11.114	0	1	139130	+		16748	19505	9486	9487	21123	21123					0.06481897356070476
IYFNEVSPKL	10	Unmodified	_IYFNEVSPKL_					0	0	0			REV__ENSG00000120324|ENST00000239446|PCDHB10	REV__ENSG00000120324|ENST00000239446|PCDHB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.3287963867188	2	605.329339	1208.64412	0.039707	2.4036E-05	-0.017466	-1.0573E-05	0.022241	1.3463E-05	605.3290065301359	59.858	0.47045	59.953	59.661	60.131	0.095093					33	16	3	0	0	0	0.22753	1	14601	14601		40.239	12.61	1	445080	+		16749	15081	9487	9488	21124	21124					0.04814854337337238
IYFNEVSPKL	10	Unmodified	_IYFNEVSPKL_					0	0	0			REV__ENSG00000120324|ENST00000239446|PCDHB10	REV__ENSG00000120324|ENST00000239446|PCDHB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.3298950195312	2	605.329339	1208.64412	0.2494	0.00015097	-0.00077567	-4.6954E-07	0.24862	0.0001505	605.3291869322948	59.911	0.48577	59.899	59.683	60.168	-0.011486					28	16	3	0	0	0	0.29637	2	14642	14642;14651		23.79	8.9515	1	545540	+		16750	15081	9487	9488	21125;21126	21125					0.04814854337337238
IYFNEVSPKL	10	Unmodified	_IYFNEVSPKL_					0	0	0			REV__ENSG00000120324|ENST00000239446|PCDHB10	REV__ENSG00000120324|ENST00000239446|PCDHB10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	605.329339	1208.64412	0.13791	8.3482E-05	0.56498	0.000342	0.70289	0.00042548	605.329260195979	59.92	0.39735	59.92	59.728	60.126	0	-0.0039138	0.00047458	NaN	40.239	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461900	+		16751	15081	9487	9488							0.04814854337337238
IYFNEVSPKL	10	Unmodified	_IYFNEVSPKL_					0	0	0			REV__ENSG00000120324|ENST00000239446|PCDHB10	REV__ENSG00000120324|ENST00000239446|PCDHB10	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	605.329339	1208.64412	0.039707	2.4036E-05	-0.017466	-1.0573E-05	0.022241	1.3463E-05	605.3290065301359	59.858	0.47045	59.953	59.661	60.131	0.095093	0.028563	-0.00023056	NaN	40.239	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	445080	+		16752	15081	9487	9488							0.04814854337337238
IYFNEVSPKL	10	Unmodified	_IYFNEVSPKL_					0	0	0			REV__ENSG00000120324|ENST00000239446|PCDHB10	REV__ENSG00000120324|ENST00000239446|PCDHB10	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	605.329339	1208.64412	0.2494	0.00015097	-0.00077567	-4.6954E-07	0.24862	0.0001505	605.3291869322948	59.911	0.48577	59.899	59.683	60.168	-0.011486	-0.024649	-0.00021036	NaN	40.239	28	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	545540	+		16753	15081	9487	9488							0.04814854337337238
IYFPKKEAVTF	11	Unmodified	_IYFPKKEAVTF_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.25164794921875	3	448.251701	1341.73327	0.28564	0.00012804	-0.36366	-0.00016301	-0.07802	-3.4973E-05	448.25157881299594	50.034	1.8632	50.034	49.729	51.592	0					180	68	5	0	0	0	0.028371	2	11602	11549;11602		59.496	35.532	1	11648000			16754	4023	9488	9489	21127;21128	21128					0.07607689296833087
IYFPKKEAVTF	11	Unmodified	_IYFPKKEAVTF_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	448.251701	1341.73327	0.48823	0.00021885	-0.51725	-0.00023186	-0.029019	-1.3008E-05	448.2515203584718	50.005	1.597	50.05	49.749	51.346	0.044891	-0.0048887	-1.6313E-05	NaN	59.496	178	59	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13371000			16755	4023	9488	9489							0.07607689296833087
IYFPKKEAVTF	11	Unmodified	_IYFPKKEAVTF_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	448.251701	1341.73327	0.59616	0.00026723	-0.62088	-0.00027831	-0.024721	-1.1081E-05	448.25145824605124	50.061	1.7969	50.081	49.694	51.491	0.020691	0.026387	-0.00015567	NaN	59.496	196	67	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12126000			16756	4023	9488	9489							0.07607689296833087
IYFPSVTGI	9	Unmodified	_IYFPSVTGI_					0	0	0		ENST00000510943.3_1_5:1078727-1081764:-|nuORF;ENSG00000113504|ENST00000264930|SLC12A7;ENSG00000124140|ENST00000243964|SLC12A5;nc|ENSG00000124140|Q9H2X9|SLC12A5	ENST00000510943.3_1_5:1078727-1081764:-|nuORF	ENST00000510943.3_1_5:1078727-1081764:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2759094238281	2	498.773668	995.532783	0.63432	0.00031638	-0.11492	-5.7318E-05	0.5194	0.00025906	498.77353574051403	78.85	1.0324	78.85	78.462	79.495	0					82	41	4	0	0	0	0.0017972	3	20457	20411;20457;20486		112.59	52.204	1	524600			16757	2507	9489	9490	21129;21130;21131	21130					0.03483839700038516
IYFPSVTGI	9	Unmodified	_IYFPSVTGI_					0	0	0		ENST00000510943.3_1_5:1078727-1081764:-|nuORF;ENSG00000113504|ENST00000264930|SLC12A7;ENSG00000124140|ENST00000243964|SLC12A5;nc|ENSG00000124140|Q9H2X9|SLC12A5	ENST00000510943.3_1_5:1078727-1081764:-|nuORF	ENST00000510943.3_1_5:1078727-1081764:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7738037109375	2	498.773668	995.532783	0.57178	0.00028519	-0.18448	-9.2012E-05	0.3873	0.00019318	498.77353469907445	78.718	0.80365	78.776	78.528	79.332	0.058151					73	34	3	0	0	0	0.017871	2	20438	20438;20453		67.344	34.012	1	456180			16758	2507	9489	9490	21132;21133	21132					0.03483839700038516
IYFPSVTGI	9	Unmodified	_IYFPSVTGI_					0	0	0		ENST00000510943.3_1_5:1078727-1081764:-|nuORF;ENSG00000113504|ENST00000264930|SLC12A7;ENSG00000124140|ENST00000243964|SLC12A5;nc|ENSG00000124140|Q9H2X9|SLC12A5	ENST00000510943.3_1_5:1078727-1081764:-|nuORF	ENST00000510943.3_1_5:1078727-1081764:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.28173828125	2	498.773668	995.532783	0.67032	0.00033434	-0.13738	-6.8523E-05	0.53294	0.00026582	498.7734983543017	78.846	0.86861	78.816	78.601	79.469	-0.030434					75	35	4	0	0	0	0.0036289	1	20387	20387		81.613	37.206	1	623770			16759	2507	9489	9490	21134	21134					0.03483839700038516
IYFPYVLKI	9	Unmodified	_IYFPYVLKI_					0	0	0		ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.7738647460938	2	578.344261	1154.67397	0.23546	0.00013618	-0.49785	-0.00028793	-0.26239	-0.00015175	578.3437329638797	79.977	0.46978	79.977	79.77	80.24	0					36	16	3	0	0	0	0.14099	1	20756	20756		42.095	23.96	1	239790			16760	7787	9490	9491	21135	21135					0.10281838073319705
IYFPYVLKI	9	Unmodified	_IYFPYVLKI_					0	0	0		ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.7737426757812	2	578.344261	1154.67397	0.32028	0.00018523	-0.68654	-0.00039705	-0.36625	-0.00021182	578.343578821923	79.892	0.48608	79.953	79.723	80.209	0.061409					32	17	3	0	0	0	0.14099	1	20731	20731		42.095	20.348	1	280070			16761	7787	9490	9491	21136	21136					0.10281838073319705
IYFPYVLKI	9	Unmodified	_IYFPYVLKI_					0	0	0		ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.7738647460938	2	578.344261	1154.67397	0.27734	0.0001604	-0.61824	-0.00035756	-0.34091	-0.00019716	578.343630843485	80.03	0.54037	80.001	79.752	80.292	-0.028923					38	18	3	0	0	0	0.10111	1	20757	20757		50.855	27.707	1	347310			16762	7787	9490	9491	21137	21137					0.10281838073319705
IYFQAPVKI	9	Unmodified	_IYFQAPVKI_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8065795898438	2	539.81841	1077.62227	0.51678	0.00027897	-0.93425	-0.00050432	-0.41747	-0.00022536	539.8176752906959	62.233	0.52183	62.233	62.115	62.637	0					49	19	3	0	0	0	0.017391	2	15349	15349;15398		68.081	25.986	1	898280			16763	863	9491	9492	21138;21139	21138					0.0865609437942112
IYFQAPVKI	9	Unmodified	_IYFQAPVKI_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8067626953125	2	539.81841	1077.62227	0.3814	0.00020589	-0.59948	-0.00032361	-0.21808	-0.00011772	539.8179011692458	62.15	0.5758	62.247	62.089	62.665	0.096989					42	20	3	0	0	0	0.017391	2	15333	15283;15333		68.081	39.594	1	1006300			16764	863	9491	9492	21140;21141	21141					0.0865609437942112
IYFQAPVKI	9	Unmodified	_IYFQAPVKI_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8065185546875	2	539.81841	1077.62227	0.5554	0.00029982	-0.92497	-0.00049932	-0.36956	-0.0001995	539.8176720313025	62.219	0.53014	62.211	62.067	62.597	-0.0085526					45	19	3	0	0	0	0.017391	2	15337	15337;15389		68.081	33.978	1	899890			16765	863	9491	9492	21142;21143	21142					0.0865609437942112
IYFRDSSFL	9	Unmodified	_IYFRDSSFL_					0	0	0		ENSG00000129566|ENST00000262715|TEP1;nc|ENSG00000129566|Q99973-2|TEP1	ENSG00000129566|ENST00000262715|TEP1	ENSG00000129566|ENST00000262715|TEP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.2686157226562	2	574.292756	1146.57096	0.16095	9.2431E-05	0.23065	0.00013246	0.3916	0.00022489	574.2927954975785	62.165	0.60186	62.157	61.811	62.413	-0.0085526					34	21	2	0	0	0	0.21026	1	15259	15259		28.495	9.0555	1	377510			16766	3433	9492	9493	21144	21144					0.003537256147183143
IYFRDSSFL	9	Unmodified	_IYFRDSSFL_					0	0	0		ENSG00000129566|ENST00000262715|TEP1;nc|ENSG00000129566|Q99973-2|TEP1	ENSG00000129566|ENST00000262715|TEP1	ENSG00000129566|ENST00000262715|TEP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	574.292756	1146.57096	0.20363	0.00011694	0.21496	0.00012345	0.41858	0.00024039	574.2930016810739	62.081	0.50537	62.081	61.836	62.341	0	-0.066288	-4.1808E-05	NaN	28.495	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277820			16767	3433	9492	9493							0.003537256147183143
IYFRDSSFL	9	Unmodified	_IYFRDSSFL_					0	0	0		ENSG00000129566|ENST00000262715|TEP1;nc|ENSG00000129566|Q99973-2|TEP1	ENSG00000129566|ENST00000262715|TEP1	ENSG00000129566|ENST00000262715|TEP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	574.292756	1146.57096	0.13338	7.6601E-05	0.33076	0.00018995	0.46414	0.00026655	574.2926935368072	62.106	0.57469	62.203	61.867	62.442	0.096985	0.056301	9.1198E-05	NaN	28.495	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304280			16768	3433	9492	9493							0.003537256147183143
IYFSGNTYL	9	Unmodified	_IYFSGNTYL_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENST00000489736.5_1_3:148904295-148925363:-|nuORF;ENST00000497902.5_1_3:148903024-148905845:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.266845703125	2	539.266207	1076.51786	0.47397	0.0002556	0.70298	0.0003791	1.177	0.00063469	539.266455122733	68.109	0.67491	68.109	67.842	68.517	0					61	24	4	0	0	0	0.00023138	1	17167	17167		129.77	78.917	1	1058300			16769	632	9493	9494	21145	21145					-0.017336521679453654
IYFSGNTYL	9	Unmodified	_IYFSGNTYL_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENST00000489736.5_1_3:148904295-148925363:-|nuORF;ENST00000497902.5_1_3:148903024-148905845:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2667236328125	2	539.266207	1076.51786	0.47801	0.00025778	0.50935	0.00027467	0.98736	0.00053245	539.2663577372579	68.06	0.68298	68.138	67.834	68.517	0.078041					59	24	3	0	0	0	0.0015055	1	17129	17129		118.07	60.597	1	943400			16770	632	9493	9494	21146	21146					-0.017336521679453654
IYFSGNTYL	9	Unmodified	_IYFSGNTYL_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENST00000489736.5_1_3:148904295-148925363:-|nuORF;ENST00000497902.5_1_3:148903024-148905845:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.266845703125	2	539.266207	1076.51786	0.56826	0.00030644	0.49804	0.00026858	1.0663	0.00057502	539.2663695150268	68.173	0.64836	68.154	67.836	68.484	-0.01915					53	22	3	0	0	0	0.0013683	1	17154	17154		118.07	60.597	1	1171500			16771	632	9493	9494	21147	21147					-0.017336521679453654
IYFSNHPMCL	10	Unmodified	_IYFSNHPMCL_					0	0	0		ENST00000397928.5_2_21:45773469-45773502:+|nuORF	ENST00000397928.5_2_21:45773469-45773502:+|nuORF	ENST00000397928.5_2_21:45773469-45773502:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.78076171875	2	612.780644	1223.54674	0.46359	0.00028408	0.17235	0.00010561	0.63594	0.00038969	612.780730367592	64.291	0.70748	64.281	64.045	64.752	-0.0095291					44	25	2	0	0	0	0.34325	1	15955	15955		13.906	0	1	671370			16772	10148	9494	9495	21148	21148					-0.056095741348144657
IYFTTPEGVL	10	Unmodified	_IYFTTPEGVL_					0	0	0			REV__ENSG00000205277|ENST00000536621|MUC12	REV__ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3030395507812	2	570.30279	1138.59103	0.14938	8.519E-05	-0.74183	-0.00042307	-0.59245	-0.00033788	570.3023726082926	25.236	0.78584	25.18	24.918	25.704	-0.055931					66	27	3	0	0	0	0.39935	1	4089	4089		3.5965	0.31518	1	468190	+		16773	18984	9495	9496	21149	21149					0.02727476554673558
IYGASYVPF	9	Unmodified	_IYGASYVPF_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF;nc|ENSG00000163694|A0AV96-2|RBM47	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2533874511719	2	508.758018	1015.50148	0.45765	0.00023283	0.7851	0.00039942	1.2427	0.00063226	509.2596481147545	72.38	0.62182	72.436	72.224	72.846	0.056572					30	22	2	0	0	0	0.21137	1	18525	18525		24.674	6.5389	1	141320			16774	5722	9496	9497	21150	21150					-0.005647333340448313
IYGASYVPF	9	Unmodified	_IYGASYVPF_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF;nc|ENSG00000163694|A0AV96-2|RBM47	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	508.758018	1015.50148	0.41072	0.00020896	0.81155	0.00041288	1.2223	0.00062184	508.7585369522555	72.473	0.48431	72.473	72.241	72.726	0	0.018075	0.00018286	NaN	24.674	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141730			16775	5722	9496	9497							-0.005647333340448313
IYGASYVPF	9	Unmodified	_IYGASYVPF_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF;nc|ENSG00000163694|A0AV96-2|RBM47	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.758018	1015.50148	0.39145	0.00019915	0.51938	0.00026424	0.91083	0.00046339	509.2598735149624	72.484	0.48394	72.455	72.254	72.738	-0.029305	0.00018131	-0.00011443	NaN	24.674	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204690			16776	5722	9496	9497							-0.005647333340448313
IYGDAPVTSL	10	Unmodified	_IYGDAPVTSL_					0	0	0			REV__nc|ENSG00000100505|Q9C026-5|TRIM9	REV__nc|ENSG00000100505|Q9C026-5|TRIM9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3176879882812	2	518.27149	1034.52843	0.62654	0.00032472	-0.49992	-0.0002591	0.12661	6.562E-05	518.2712635417599	66.007	0.42094	66.007	65.845	66.266	0					30	14	3	0	0	0	0.25875	1	16474	16474		13.906	8.1742	1	257950	+		16777	14205	9497	9498	21151	21151					0.012543304864948368
IYGDAPVTSL	10	Unmodified	_IYGDAPVTSL_					0	0	0			REV__nc|ENSG00000100505|Q9C026-5|TRIM9	REV__nc|ENSG00000100505|Q9C026-5|TRIM9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.31787109375	2	518.27149	1034.52843	0.39786	0.0002062	-0.63891	-0.00033113	-0.24105	-0.00012493	518.2712819211242	66.004	0.52994	65.99	65.72	66.25	-0.013596					25	18	2	0	0	0	0.25875	1	16495	16495		25.399	1.3787	1	228580	+		16778	14205	9497	9498	21152	21152					0.012543304864948368
IYGECRRW	8	Unmodified	_IYGECRRW_					0	0	0			REV__ENST00000261366.9_1_5:126161747-126168414:+|nuORF	REV__ENST00000261366.9_1_5:126161747-126168414:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3002319335938	2	541.763643	1081.51273	0.62357	0.00033783	3.9068	0.0021166	4.5304	0.0024544	542.2671521081918	65.66	0.52647	65.66	65.268	65.795	0					25	18	2	0	0	0	0.33245	1	16382	16382		19.439	0	1	294200	+		16779	19590	9498	9499	21153	21153					-0.024762345115505013
IYGECRRW	8	Unmodified	_IYGECRRW_					0	0	0			REV__ENST00000261366.9_1_5:126161747-126168414:+|nuORF	REV__ENST00000261366.9_1_5:126161747-126168414:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.3003540039062	2	541.763643	1081.51273	0.69328	0.0003756	3.5837	0.0019415	4.277	0.0023171	541.7658975477557	65.723	0.54702	65.712	65.227	65.774	-0.011337					27	19	2	0	0	0	0.33245	1	16378	16378		19.439	0	1	286790	+		16780	19590	9498	9499	21154	21154					-0.024762345115505013
IYGEKTYAF	9	Unmodified	_IYGEKTYAF_					0	0	0		ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.765869140625	2	546.274032	1090.53351	0.14599	7.9748E-05	-0.077421	-4.2293E-05	0.068564	3.7455E-05	546.2736797605689	46.32	0.48526	46.32	46.055	46.54	0					28	17	3	0	0	0	0.011693	2	10436	10436;10454		76.825	30.334	1	1785900			16781	8549	9499	9500	21155;21156	21155					-0.008133656509244247
IYGEKTYAF	9	Unmodified	_IYGEKTYAF_					0	0	0		ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.7667846679688	2	546.274032	1090.53351	0.29359	0.00016038	-0.046488	-2.5395E-05	0.2471	0.00013498	546.273816957273	46.011	0.46377	46.071	45.844	46.307	0.059834					23	16	2	0	0	0	0.0098873	1	10336	10336		79.596	25.764	1	1664100			16782	8549	9499	9500	21157	21157					-0.008133656509244247
IYGEKTYAF	9	Unmodified	_IYGEKTYAF_					0	0	0		ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7659912109375	2	546.274032	1090.53351	0.65601	0.00035836	-0.72767	-0.00039751	-0.071657	-3.9144E-05	546.2735598036733	46.061	0.58281	46.126	45.811	46.394	0.065048					26	20	2	0	0	0	0.003317	1	10309	10309		99.755	30.65	1	1422900			16783	8549	9499	9500	21158	21158					-0.008133656509244247
IYGERCECR	9	Unmodified	_IYGERCECR_					0	0	0			REV__ENSG00000183287|ENST00000439986|CCBE1	REV__ENSG00000183287|ENST00000439986|CCBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.26513671875	2	564.749876	1127.4852	0.54409	0.00030728	0.86178	0.00048669	1.4059	0.00079397	564.7503042963676	74.488	0.53996	74.488	74.225	74.765	0					32	18	2	0	0	0	0.30623	1	19083	19083		7.9102	0.62092	1	504680	+		16784	18250	9500	9501	21159	21159					-0.0734450583411217
IYGEVHDD	8	Unmodified	_IYGEVHDD_					0	0	0		ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000104043|ENST00000284509|ATP8B4	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7658996582031	2	474.208889	946.403226	0.192	9.1048E-05	1.7525	0.00083107	1.9445	0.00092212	474.20974130130537	66.547	0.5692	66.534	66.222	66.791	-0.013588					30	20	2	0	0	0	0.34092	1	16714	16714		13.508	1.8676	1	127380			16785	1861	9501	9502	21160	21160					-0.07211961649909426
IYGEVHDD	8	Unmodified	_IYGEVHDD_					0	0	0		ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000104043|ENST00000284509|ATP8B4	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	474.208889	946.403226	0.31247	0.00014818	1.6966	0.00080456	2.0091	0.00095274	474.20959993360833	66.446	0.60373	66.53	66.134	66.738	0.083832	-0.010012	-2.7517E-05	NaN	13.508	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131350			16786	1861	9501	9502							-0.07211961649909426
IYGFCSQVPY	10	Unmodified	_IYGFCSQVPY_					0	0	0		nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43;nc|ENSG00000197748|Q8NDM7-3|CFAP43;CFAP43|p.Y1031Lfs*2|1|0.43|ENSG00000197748|chr10:104164248-104164249|-/A|frameshift_variant	nc|ENSG00000197748|Q8NDM7-2|CFAP43	nc|ENSG00000197748|Q8NDM7-2|CFAP43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.7730712890625	2	588.773342	1175.53213	0.4675	0.00027525	0.069806	4.11E-05	0.53731	0.00031635	588.7734665852734	72.268	0.55965	72.24	72.009	72.568	-0.027275					44	19	4	0	0	0	0.2593	1	18441	18441		25.399	1.3787	1	463360			16787	7996	9502	9503	21161	21161					-0.04861323011323293
IYGFFNQAF	9	Unmodified	_IYGFFNQAF_					0	0	0		nc|ENSG00000115295|Q8N3C7-4|CLIP4	nc|ENSG00000115295|Q8N3C7-4|CLIP4	nc|ENSG00000115295|Q8N3C7-4|CLIP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8306884765625	2	553.768917	1105.52328	0.49876	0.0002762	1.1523	0.00063809	1.651	0.00091429	553.7696330402492	83.314	0.27371	83.293	83.207	83.481	-0.020584					12	10	2	0	0	0	0.24311	1	21805	21805		11.64	6.8843	1	59508			16788	12661	9503	9504	21162	21162					-0.02525928585487236
IYGFSQGNGGN	11	Unmodified	_IYGFSQGNGGN_					0	0	0			REV__ENST00000529077.5_1_11:134236970-134242406:+|nuORF	REV__ENST00000529077.5_1_11:134236970-134242406:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7844848632812	2	557.25162	1112.48869	0.33091	0.0001844	-3.5889	-0.0019999	-3.258	-0.0018155	557.2497561355776	53.231	0.47827	53.221	53.004	53.482	-0.0096054					24	17	2	0	0	0	0.32736	1	12627	12627		8.1555	0.54658	1	350720	+		16789	16460	9504	9505	21163	21163					-0.06305796464221203
IYGGDYERF	9	Unmodified	_IYGGDYERF_					0	0	0		ENSG00000120137|ENST00000239231|PANK3;nc|ENSG00000125779|Q9BZ23-2|PANK2;nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2;ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1;PANK1|p.I539Tfs*17|1|0.19|ENSG00000152782|chr10:89588770-89588773|TCTA/-|frameshift_variant	ENSG00000120137|ENST00000239231|PANK3;ENSG00000152782|ENST00000307534|PANK1	ENSG00000120137|ENST00000239231|PANK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.8040771484375	2	560.258914	1118.50327	0.29245	0.00016385	0.7869	0.00044087	1.0794	0.00060472	560.259177960006	45.727	0.47823	45.787	45.593	46.072	0.059837					26	16	2	0	0	0	0.18479	1	10249	10249		34.932	16.786	1	409020			16790	2929;5040	9505	9506	21164	21164					-0.05123724316104017
IYGGDYERF	9	Unmodified	_IYGGDYERF_					0	0	0		ENSG00000120137|ENST00000239231|PANK3;nc|ENSG00000125779|Q9BZ23-2|PANK2;nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2;ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1;PANK1|p.I539Tfs*17|1|0.19|ENSG00000152782|chr10:89588770-89588773|TCTA/-|frameshift_variant	ENSG00000120137|ENST00000239231|PANK3;ENSG00000152782|ENST00000307534|PANK1	ENSG00000120137|ENST00000239231|PANK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.258914	1118.50327	0.31335	0.00017555	0.60711	0.00034014	0.92046	0.00051569	560.2589560065329	46.099	0.43657	46.099	45.888	46.324	0	0.20572	-0.00011591	NaN	34.932	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	401470			16791	2929;5040	9505	9506							-0.05123724316104017
IYGGDYERF	9	Unmodified	_IYGGDYERF_					0	0	0		ENSG00000120137|ENST00000239231|PANK3;nc|ENSG00000125779|Q9BZ23-2|PANK2;nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2;ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1;PANK1|p.I539Tfs*17|1|0.19|ENSG00000152782|chr10:89588770-89588773|TCTA/-|frameshift_variant	ENSG00000120137|ENST00000239231|PANK3;ENSG00000152782|ENST00000307534|PANK1	ENSG00000120137|ENST00000239231|PANK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	560.258914	1118.50327	0.4624	0.00025907	0.76273	0.00042733	1.2251	0.00068639	560.2589331340321	45.728	0.43783	45.793	45.57	46.008	0.065048	-0.10004	5.847E-05	NaN	34.932	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469300			16792	2929;5040	9505	9506							-0.05123724316104017
IYGGTYML	8	Oxidation (M)	_IYGGTYM(Oxidation (M))L_		IYGGTYM(1)L		IYGGTYM(86)L	0	0	1		ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2;ENST00000491154.1_1_X:153669338-153669692:+|nuORF;ENST00000471972.1_1_X:153668686-153669692:+|nuORF;ENST00000476540.1_1_X:153669338-153670248:+|nuORF;ENSG00000203879|ENST00000447750|GDI1	ENSG00000057608|ENST00000380191|GDI2;ENSG00000203879|ENST00000447750|GDI1	ENSG00000057608|ENST00000380191|GDI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2228088378906	2	467.222954	932.431355	0.31473	0.00014705	-0.065957	-3.0816E-05	0.24877	0.00011623	467.2228415391292	54.474	0.70089	54.474	54.136	54.837	0					59	25	3	0	0	0	0.059117	1	12919	12919		86.121	36.452	1	992290			16793	722;8190	9506	9507	21165	21165		93			-0.03756354994152389
IYGGTYML	8	Oxidation (M)	_IYGGTYM(Oxidation (M))L_		IYGGTYM(1)L		IYGGTYM(140)L	0	0	1		ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2;ENST00000491154.1_1_X:153669338-153669692:+|nuORF;ENST00000471972.1_1_X:153668686-153669692:+|nuORF;ENST00000476540.1_1_X:153669338-153670248:+|nuORF;ENSG00000203879|ENST00000447750|GDI1	ENSG00000057608|ENST00000380191|GDI2;ENSG00000203879|ENST00000447750|GDI1	ENSG00000057608|ENST00000380191|GDI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2229309082031	2	467.222954	932.431355	0.32462	0.00015167	-0.10832	-5.0608E-05	0.2163	0.00010106	467.2227725403841	54.43	0.69797	54.493	54.192	54.89	0.063202					60	25	3	0	0	0	0.0016215	1	12939	12939		136.08	76.285	1	996330			16794	722;8190	9506	9507	21166	21166		93			-0.03756354994152389
IYGGTYML	8	Oxidation (M)	_IYGGTYM(Oxidation (M))L_					0	0	1		ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2;ENST00000491154.1_1_X:153669338-153669692:+|nuORF;ENST00000471972.1_1_X:153668686-153669692:+|nuORF;ENST00000476540.1_1_X:153669338-153670248:+|nuORF;ENSG00000203879|ENST00000447750|GDI1	ENSG00000057608|ENST00000380191|GDI2;ENSG00000203879|ENST00000447750|GDI1	ENSG00000057608|ENST00000380191|GDI2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	467.222954	932.431355	0.49879	0.00023305	-0.34262	-0.00016008	0.15617	7.2967E-05	467.22276085782806	54.65	0.67063	54.634	54.335	55.006	-0.015919	0.10066	-0.00015199	NaN	136.08	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1036400			16795	722;8190	9506	9507				93			-0.03756354994152389
IYGKDVFEAF	10	Unmodified	_IYGKDVFEAF_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.2854614257812	2	594.800414	1187.58628	0.67465	0.00040128	0.025474	1.5152E-05	0.70013	0.00041644	594.8003374290056	63.982	0.57133	63.982	63.771	64.342	0					53	20	4	0	0	0	0.024262	2	15900	15851;15900		67.081	37.999	1	615680			16796	5350	9507	9508	21167;21168	21168					-1.4075880926611717E-05
IYGKDVFEAF	10	Unmodified	_IYGKDVFEAF_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.2857666015625	2	594.800414	1187.58628	0.61705	0.00036702	0.30618	0.00018212	0.92323	0.00054914	594.8005415129958	63.882	0.69556	63.975	63.588	64.284	0.09288					68	24	4	0	0	0	0.030754	3	15843	15796;15843;15902		63.227	34.146	1	722920			16797	5350	9507	9508	21169;21170;21171	21170					-1.4075880926611717E-05
IYGKDVFEAF	10	Unmodified	_IYGKDVFEAF_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.2857666015625	2	594.800414	1187.58628	0.63007	0.00037477	0.12652	7.5255E-05	0.75659	0.00045002	594.800492059025	63.989	0.51998	63.979	63.769	64.289	-0.0095291					60	18	4	0	0	0	0.015324	2	15849	15849;15895		76.825	40.698	1	872440			16798	5350	9507	9508	21172;21173	21172					-1.4075880926611717E-05
IYGKFRKTF	9	Unmodified	_IYGKFRKTF_					0	0	0		ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3347778320312	2	580.334759	1158.65496	0.22296	0.00012939	-0.36072	-0.00020934	-0.13776	-7.9947E-05	580.3342690903834	62.094	2.2532	62.191	61.429	63.683	0.096985					133	81	2	0	0	0	0.26879	1	15690	15690		13.508	7.1538	1	352690			16799	1543	9508	9509	21174	21174					0.08198301502261529
IYGLGKSQKL	10	Unmodified	_IYGLGKSQKL_					0	0	0		ENSG00000119684|ENST00000355774|MLH3;nc|ENSG00000119684|Q9UHC1-2|MLH3	ENSG00000119684|ENST00000355774|MLH3	ENSG00000119684|ENST00000355774|MLH3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8287963867188	2	553.832049	1105.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.202	1	90.293	89.793	90.793	0.090668								0	0	0	0.36922	1	23894	23894		6.7232	0.36906	1				16800	2896	9509	9510	21175	21175					0.10094577919812764
IYGLIKTGA	9	Unmodified	_IYGLIKTGA_					0	0	0		ENSG00000196475|ENST00000358842|GK2	ENSG00000196475|ENST00000358842|GK2	ENSG00000196475|ENST00000358842|GK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.26708984375	2	468.28166	934.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.801	1	76.77	76.27	77.27	-0.031448								0	0	0	0.22457	1	19782	19782		14.582	3.4672	1				16801	7869	9510	9511	21176	21176					0.07887545936955576
IYGLLCFLVT	10	Unmodified	_IYGLLCFLVT_					0	0	0			REV__ENSG00000231738|ENST00000532498|TSPAN19	REV__ENSG00000231738|ENST00000532498|TSPAN19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8055419921875	2	571.319928	1140.6253	0.45773	0.00026151	-0.93943	-0.00053671	-0.48169	-0.0002752	571.3189349601613	76.815	0.7052	76.783	76.395	77.1	-0.031372					66	25	4	0	0	0	0.27772	1	19856	19856		26.884	3.7352	1	204010	+		16802	19135	9511	9512	21177	21177					0.0606160144191108
IYGLLKNPF	9	Unmodified	_IYGLLKNPF_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF	nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3092041015625	2	532.810585	1063.60662	0.58657	0.00031253	0.13779	7.3418E-05	0.72436	0.00038595	532.8108645018	65.908	1.2901	65.997	65.677	66.968	0.088882					68	46	2	0	0	0	0.00010798	2	16414	16414;16461		139.54	91.198	1	1907900			16803	12721	9512	9513	21178;21179	21178					0.07735807862354704
IYGLLKNPF	9	Unmodified	_IYGLLKNPF_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF	nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.811279296875	2	532.810585	1063.60662	0.51505	0.00027442	-0.57511	-0.00030642	-0.060057	-3.1999E-05	532.8108136611602	65.99	2.1823	65.977	65.692	67.874	-0.013596					129	77	2	0	0	0	2.4571E-07	2	16457	16457;16504		170.55	113.08	1	1996300			16804	12721	9512	9513	21180;21181	21180					0.07735807862354704
IYGLLKNPF	9	Unmodified	_IYGLLKNPF_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF	nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8108520507812	2	532.810585	1063.60662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.392	1	74.362	73.862	74.862	-0.030655								0	0	0	0.24077	1	19048	19048		9.3474	0.75416	1				16805	12721	9512	9513	21182	21182					0.07735807862354704
IYGLMVALLI	10	Unmodified	_IYGLMVALLI_					0	0	0		ENSG00000181074|ENST00000641350|OR52N4;ENSG00000180988|ENST00000317037|OR52N2;ENSG00000181009|ENST00000641181|OR52N5	ENSG00000181074|ENST00000641350|OR52N4	ENSG00000181074|ENST00000641350|OR52N4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8300170898438	2	553.338121	1104.66169	0.38552	0.00021332	0.25085	0.00013881	0.63637	0.00035213	553.3381268718006	90.506	0.4393	90.506	90.319	90.758	0					37	32	2	0	0	0	0.31745	1	23944	23944		7.9102	2.6795	1	155300			16806	7214	9513	9514	21183	21183					0.11354478338625995
IYGQIFSF	8	Unmodified	_IYGQIFSF_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7524108886719	2	487.752736	973.490919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.795	1	80.769	80.269	81.269	-0.026825								0	0	0	0.035566	1	20999	20999		77.984	21.443	1				16807	2033	9514	9515	21184	21184					0.0031128401152500373
IYGSLHSALS	10	Unmodified	_IYGSLHSALS_					0	0	0			REV__ENST00000482655.2_1_13:28008892-28009731:+|nuORF	REV__ENST00000482655.2_1_13:28008892-28009731:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.8215942382812	2	524.277106	1046.53966	0.58676	0.00030763	0.51878	0.00027198	1.1055	0.00057961	524.2772511192161	51.538	0.53825	51.538	51.271	51.809	0					24	19	2	0	0	0	0.30079	1	12066	12066		14.838	4.0143	1	278560	+		16808	15145	9515	9516	21185	21185					0.01825152580613576
IYGSTFLYL	9	Unmodified	_IYGSTFLYL_					0	0	0		ENSG00000204178|ENST00000374343|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.786865234375	2	538.786776	1075.559	0.75015	0.00040417	-0.44223	-0.00023827	0.30792	0.0001659	538.7864820266988	83.702	0.68448	83.702	83.373	84.057	0					75	26	4	0	0	0	0.00207	1	21900	21900		109.63	49.24	1	1438700			16809	8202	9516	9517	21186	21186					0.02424108871491626
IYGSTFLYL	9	Unmodified	_IYGSTFLYL_					0	0	0		ENSG00000204178|ENST00000374343|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.786865234375	2	538.786776	1075.559	0.6061	0.00032656	-0.38769	-0.00020888	0.21841	0.00011767	538.786519461776	83.618	0.71883	83.695	83.379	84.097	0.077095					79	28	4	0	0	0	0.0014051	2	21868	21868;21965		117.6	57.209	1	1288700			16810	8202	9516	9517	21187;21188	21187					0.02424108871491626
IYGSTFLYL	9	Unmodified	_IYGSTFLYL_					0	0	0		ENSG00000204178|ENST00000374343|MACO1;nc|ENSG00000204178|Q8N5G2-3|MACO1	ENSG00000204178|ENST00000374343|MACO1	ENSG00000204178|ENST00000374343|MACO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7867431640625	2	538.786776	1075.559	0.72373	0.00038994	-0.48749	-0.00026265	0.23624	0.00012729	538.7864597602246	83.727	0.90374	83.71	83.375	84.279	-0.016823					88	40	4	0	0	0	0.0055862	1	21941	21941		97.075	43.499	1	1156800			16811	8202	9516	9517	21189	21189					0.02424108871491626
IYGSTGVYF	9	Unmodified	_IYGSTGVYF_					0	0	0		nc|ENSG00000144837|Q53H76-3|PLA1A;ENSG00000144837|ENST00000273371|PLA1A;nc|ENSG00000144837|Q53H76-2|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.80047607421875	2	503.74765	1005.48075	0.54947	0.0002768	-0.72021	-0.0003628	-0.17073	-8.6007E-05	503.7475498181455	64.252	0.39827	64.242	64.045	64.443	-0.0095291					20	14	2	0	0	0	0.15464	1	15935	15935		38.151	6.0342	1	214700			16812	12739	9517	9518	21190	21190					-0.021773237137153956
IYGYRVIF	8	Unmodified	_IYGYRVIF_					0	0	0			REV__nc|ENSG00000108370|O75916-2|RGS9	REV__nc|ENSG00000108370|O75916-2|RGS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.789306640625	2	515.789653	1029.56475	0.58422	0.00030133	-0.62316	-0.00032142	-0.038945	-2.0087E-05	515.7891795633885	64.256	0.70579	64.256	63.941	64.647	0					48	25	3	0	0	0	0.31375	1	15973	15973		26.341	5.4701	1	693270	+		16813	14589	9518	9519	21191	21191					0.051152521738458745
IYGYRVIF	8	Unmodified	_IYGYRVIF_					0	0	0			REV__nc|ENSG00000108370|O75916-2|RGS9	REV__nc|ENSG00000108370|O75916-2|RGS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7898559570312	2	515.789653	1029.56475	0.41374	0.0002134	-0.65273	-0.00033667	-0.23899	-0.00012327	515.789228456354	64.17	0.67434	64.263	63.986	64.66	0.09288					57	24	3	0	0	0	0.29855	1	15939	15939		32.117	5.7757	1	691040	+		16814	14589	9518	9519	21192	21192					0.051152521738458745
IYGYRVIF	8	Unmodified	_IYGYRVIF_					0	0	0			REV__nc|ENSG00000108370|O75916-2|RGS9	REV__nc|ENSG00000108370|O75916-2|RGS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.7896118164062	2	515.789653	1029.56475	0.43126	0.00022244	-0.55834	-0.00028799	-0.12708	-6.5544E-05	515.7893252115092	64.267	0.75512	64.258	63.936	64.691	-0.0095291					57	24	3	0	0	0	0.33916	1	16004	16004		26.341	4.5946	1	668510	+		16815	14589	9518	9519	21193	21193					0.051152521738458745
IYGYRVIF	8	Unmodified	_IYGYRVIF_					0	0	0			REV__nc|ENSG00000108370|O75916-2|RGS9	REV__nc|ENSG00000108370|O75916-2|RGS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.7894897460938	2	515.789653	1029.56475	0.43126	0.00022244	-0.55834	-0.00028799	-0.12708	-6.5544E-05	515.7893252115092	64.267	0.75512	64.258	63.936	64.691	-0.0095291					57	24	3	0	0	0	0.29855	1	15947	15947		32.117	3.9437	1	668510	+		16816	14589	9518	9519	21194	21194					0.051152521738458745
IYGYVAEQF	9	Unmodified	_IYGYVAEQF_					0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2671508789062	2	545.266207	1088.51786	0.67924	0.00037037	-0.18588	-0.00010136	0.49335	0.00026901	545.2665504002252	64.055	2.2855	64.055	63.695	65.981	0					256	83	6	0	0	0	6.7091E-11	7	15879	15879;15921;15969;16011;16054;16107;16283		181.33	113.98	1	22628000			16817	2592	9519	9520	21195;21196;21197;21198;21199;21200;21201	21195					-0.022856521679386788
IYGYVAEQF	9	Unmodified	_IYGYVAEQF_					0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7916870117188	2	545.266207	1088.51786	0.45379	0.00024744	0.5294	0.00028866	0.98319	0.0005361	545.2665759815328	69.061	0.74726	69.061	68.708	69.455	0					40	26	2	0	0	0	0.20881	1	17352	17352		16.149	0	1	111690			16818	2592	9519	9520	21202	21202					-0.022856521679386788
IYGYVAEQF	9	Unmodified	_IYGYVAEQF_					0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3170776367188	2	545.266207	1088.51786	0.85509	0.00046625	0.43297	0.00023608	1.2881	0.00070233	545.2663760425507	77.749	0.3992	77.749	77.58	77.979	0					21	14	2	0	0	0	0.1939	1	20084	20084		8.7454	0	1	109220			16819	2592	9519	9520	21203	21203					-0.022856521679386788
IYGYVAEQF	9	Unmodified	_IYGYVAEQF_					0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.82958984375	2	545.266207	1088.51786	0.45187	0.00024639	1.6859	0.00091924	2.1377	0.0011656	545.26708416381	67.466	0.89454	67.466	67.076	67.97	0					47	30	2	0	0	0	0.18123	1	16930	16930		34.402	18.555	1	136510			16820	2592	9519	9520	21204	21204					-0.022856521679386788
IYGYVAEQF	9	Unmodified	_IYGYVAEQF_					0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2671508789062	2	545.266207	1088.51786	0.73305	0.00039971	-0.25131	-0.00013703	0.48174	0.00026268	545.2665011022599	63.929	2.7162	64.022	63.678	66.395	0.092884					292	99	5	0	0	0	1.0901E-16	6	15872	15832;15872;15927;15974;16026;16078		214.14	136.15	1	22290000			16821	2592	9519	9520	21205;21206;21207;21208;21209;21210	21206					-0.022856521679386788
IYGYVAEQF	9	Unmodified	_IYGYVAEQF_					0	0	0		ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	ENST00000448693.2_1_3:52740223-52740934:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2672119140625	2	545.266207	1088.51786	0.80578	0.00043937	-0.355	-0.00019357	0.45078	0.00024579	545.2664762968943	64.04	2.7194	64.03	63.718	66.437	-0.0095367					282	99	5	0	0	0	6.7091E-11	7	15869	15869;15910;15960;16009;16061;16116;16256		181.33	120.94	1	23378000			16822	2592	9519	9520	21211;21212;21213;21214;21215;21216;21217	21211					-0.022856521679386788
IYGYVDATY	9	Unmodified	_IYGYVDATY_					0	0	0		ENST00000575643.1_1_17:4701246-4701714:+|nuORF;ENSG00000142507|ENST00000270586|PSMB6	ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENST00000575643.1_1_17:4701246-4701714:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2820434570312	2	532.75039	1063.48623	0.49052	0.00026132	0.096374	5.1343E-05	0.58689	0.00031267	532.7504710835917	57.709	0.49342	57.709	57.525	58.018	0					44	17	3	0	0	0	0.0007571	1	13954	13954		117.6	87.374	1	1023200			16823	4445	9520	9521	21218	21218					-0.042976449218940616
IYGYVDATY	9	Unmodified	_IYGYVDATY_					0	0	0		ENST00000575643.1_1_17:4701246-4701714:+|nuORF;ENSG00000142507|ENST00000270586|PSMB6	ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENST00000575643.1_1_17:4701246-4701714:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2822265625	2	532.75039	1063.48623	0.37991	0.0002024	0.18459	9.834E-05	0.5645	0.00030074	532.7506313811555	57.556	0.59803	57.642	57.372	57.97	0.085621					53	21	4	0	0	0	0.00035727	1	13906	13906		131.3	102.81	1	887840			16824	4445	9520	9521	21219	21219					-0.042976449218940616
IYGYVDATY	9	Unmodified	_IYGYVDATY_					0	0	0		ENST00000575643.1_1_17:4701246-4701714:+|nuORF;ENSG00000142507|ENST00000270586|PSMB6	ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENST00000575643.1_1_17:4701246-4701714:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2821655273438	2	532.75039	1063.48623	0.42903	0.00022857	0.38696	0.00020615	0.81599	0.00043472	532.7506217832175	57.841	0.48045	57.824	57.606	58.087	-0.0172					42	17	3	0	0	0	0.0007571	1	13969	13969		117.6	90.715	1	894790			16825	4445	9520	9521	21220	21220					-0.042976449218940616
IYHFAEEL	8	Unmodified	_IYHFAEEL_					0	0	0			REV__ENSG00000148700|ENST00000356080|ADD3	REV__ENSG00000148700|ENST00000356080|ADD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2528381347656	2	511.2531	1020.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.47	1	119.45	118.95	119.95	-0.024361								0	0	0	0.37724	1	30842	30842		2.3027	0	1		+		16826	16431	9521	9522	21221	21221					-0.01777921339430577
IYHKLKHFKF	10	Unmodified	_IYHKLKHFKF_					0	0	0		ENSG00000149231|ENST00000646818|CCDC82	ENSG00000149231|ENST00000646818|CCDC82	ENSG00000149231|ENST00000646818|CCDC82	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2480163574219	3	454.267797	1359.78156	-0.0068845	-3.1274E-06	0.3717	0.00016885	0.36482	0.00016573	454.26773637978675	27.41	0.43842	27.41	27.091	27.53	0					35	14	3	0	0	0	0.31473	1	4573	4573		13.615	10.543	1	230310			16827	4851	9522	9523	21222	21222					0.11606227727384066
IYHKLKHFKF	10	Unmodified	_IYHKLKHFKF_					0	0	0		ENSG00000149231|ENST00000646818|CCDC82	ENSG00000149231|ENST00000646818|CCDC82	ENSG00000149231|ENST00000646818|CCDC82	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	454.267797	1359.78156	-0.062847	-2.8549E-05	1.6505	0.00074977	1.5877	0.00072122	454.2686461493632	27.48	0.23348	27.469	27.266	27.499	-0.01156	0.037936	0.0012865	NaN	18.373	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104190			16828	4851	9522	9523							0.11606227727384066
IYHNGVLEF	9	Unmodified	_IYHNGVLEF_					0	0	0		ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8262939453125	2	546.279649	1090.54475	0.4943	0.00027003	0.48046	0.00026247	0.97476	0.00053249	546.2796909445839	62.212	0.56944	62.309	61.952	62.521	0.096985					27	20	2	0	0	0	0.23784	1	15328	15328		13.906	3.8321	1	180620			16829	2334	9523	9524	21223	21223					0.003094564432331026
IYHNGVLEF	9	Unmodified	_IYHNGVLEF_					0	0	0		ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8262939453125	2	546.279649	1090.54475	0.52726	0.00028803	-0.15915	-8.694E-05	0.36811	0.00020109	546.2794971796211	62.253	0.31807	62.244	62.008	62.327	-0.0085526					18	11	2	0	0	0	0.2451	1	15332	15332		10.824	0	1	145940			16830	2334	9523	9524	21224	21224					0.003094564432331026
IYHPDIQLL	9	Unmodified	_IYHPDIQLL_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000558088.1_1_15:62244166-62253867:-|nuORF	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3110961914062	2	556.310949	1110.60735	0.34145	0.00018995	-0.17203	-9.5703E-05	0.16942	9.4248E-05	556.3111914728593	63.166	1.4567	63.166	62.832	64.288	0					99	53	4	0	0	0	0.014888	2	15612	15612;15664		71.922	28.123	1	2487400			16831	3405	9524	9525	21225;21226	21225					0.0564660251143323
IYHPDIQLL	9	Unmodified	_IYHPDIQLL_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000558088.1_1_15:62244166-62253867:-|nuORF	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3108520507812	2	556.310949	1110.60735	0.39304	0.00021865	-0.4841	-0.00026931	-0.091057	-5.0656E-05	556.310938245606	63.038	1.0516	63.134	62.825	63.876	0.095722					84	37	4	0	0	0	0.014888	3	15577	15577;15625;15689		71.922	28.064	1	2295000			16832	3405	9524	9525	21227;21228;21229	21227					0.0564660251143323
IYHPDIQLL	9	Unmodified	_IYHPDIQLL_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000558088.1_1_15:62244166-62253867:-|nuORF	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.31103515625	2	556.310949	1110.60735	0.27299	0.00015187	-0.72023	-0.00040067	-0.44724	-0.0002488	556.3108945405903	63.184	0.93493	63.175	62.86	63.795	-0.0085526					74	33	3	0	0	0	0.0083926	2	15617	15617;15685		81.89	28.057	1	2444500			16833	3405	9524	9525	21230;21231	21230					0.0564660251143323
IYHPNVDKL	9	Unmodified	_IYHPNVDKL_					0	0	0		ENSG00000177889|ENST00000318066|UBE2N;nc|ENSG00000276380|Q5JXB2|UBE2NL	ENSG00000177889|ENST00000318066|UBE2N	ENSG00000177889|ENST00000318066|UBE2N	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2908325195312	2	549.800749	1097.58694	0.46827	0.00025746	0.84175	0.0004628	1.31	0.00072025	549.8011386296425	35.729	0.25984	35.816	35.698	35.958	0.08625					14	8	2	0	0	0	0.24289	1	7202	7202		18.146	4.6385	1	229760			16834	7023	9525	9526	21232	21232					0.04205431851596586
IYHREEKR	8	Unmodified	_IYHREEKR_					0	0	0		nc|ENSG00000258227|Q9NY25-2|CLEC5A;ENSG00000258227|ENST00000546910|CLEC5A	nc|ENSG00000258227|Q9NY25-2|CLEC5A	nc|ENSG00000258227|Q9NY25-2|CLEC5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.8075561523438	2	565.806897	1129.59924	0.24544	0.00013887	0.010679	6.0424E-06	0.25612	0.00014491	565.8067942660879	21.777	0.67469	21.777	21.401	22.076	0					44	24	2	0	0	0	0.45431	1	2933	2933		4.3292	0	1	123330			16835	8638	9526	9527	21233	21233					0.03962468314648504
IYHREEKR	8	Unmodified	_IYHREEKR_					0	0	0		nc|ENSG00000258227|Q9NY25-2|CLEC5A;ENSG00000258227|ENST00000546910|CLEC5A	nc|ENSG00000258227|Q9NY25-2|CLEC5A	nc|ENSG00000258227|Q9NY25-2|CLEC5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.8071899414062	2	565.806897	1129.59924	0.20196	0.00011427	0.10248	5.7985E-05	0.30444	0.00017226	565.806863948623	21.783	0.77447	21.734	21.316	22.09	-0.049377					58	27	3	0	0	0	0.45431	1	2908	2908		4.3292	0	1	149760			16836	8638	9526	9527	21234	21234					0.03962468314648504
IYHTGTFAQI	10	Unmodified	_IYHTGTFAQI_					0	0	0		nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF	nc|ENSG00000196365|P36776-2|LONP1	nc|ENSG00000196365|P36776-2|LONP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7982788085938	2	575.798206	1149.58186	0.48446	0.00027895	0.82596	0.00047559	1.3104	0.00075454	575.7981459822246	47.584	0.77111	47.584	47.137	47.908	0					102	27	5	0	0	0	3.1355E-05	3	10837	10795;10837;10886		137.42	80.175	1	3286400			16837	7853	9527	9528	21235;21236;21237	21236					0.013051279890078149
IYHTGTFAQI	10	Unmodified	_IYHTGTFAQI_					0	0	0		nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF	nc|ENSG00000196365|P36776-2|LONP1	nc|ENSG00000196365|P36776-2|LONP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7984619140625	2	575.798206	1149.58186	0.49537	0.00028523	0.82262	0.00047367	1.318	0.0007589	575.7981236993365	47.506	0.70332	47.554	47.163	47.866	0.047523					104	25	5	0	0	0	3.1355E-05	2	10784	10784;10834		137.42	87.897	1	4144100			16838	7853	9527	9528	21238;21239	21238					0.013051279890078149
IYHTGTFAQI	10	Unmodified	_IYHTGTFAQI_					0	0	0		nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF	nc|ENSG00000196365|P36776-2|LONP1	nc|ENSG00000196365|P36776-2|LONP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7986450195312	2	575.798206	1149.58186	0.64188	0.00036959	0.19267	0.00011094	0.83455	0.00048053	575.7980519687416	47.505	0.63052	47.548	47.244	47.875	0.04332					42	23	2	0	0	0	3.1355E-05	2	10775	10775;10824		137.42	87.897	1	3362700			16839	7853	9527	9528	21240;21241	21240					0.013051279890078149
IYIAATYTF	9	Unmodified	_IYIAATYTF_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7687377929688	2	531.778951	1061.54335	0.31324	0.00016658	0.52672	0.0002801	0.83996	0.00044667	531.7791039175885	73.017	0.4381	73.071	72.871	73.309	0.053833					33	15	3	0	0	0	0.24581	1	18625	18625		16.942	3.4344	1	179750			16840	644	9528	9529	21242	21242					0.015038223544479479
IYIAATYTF	9	Unmodified	_IYIAATYTF_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.778951	1061.54335	0.56062	0.00029812	-0.070997	-3.7755E-05	0.48962	0.00026037	531.7788458431736	73.073	0.39147	73.073	72.827	73.218	0	0.0048762	-0.00018463	NaN	16.942	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159440			16841	644	9528	9529							0.015038223544479479
IYIAATYTF	9	Unmodified	_IYIAATYTF_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	531.778951	1061.54335	0.60556	0.00032202	0.060429	3.2135E-05	0.66599	0.00035416	531.7790325614036	73.09	0.50099	73.061	72.873	73.374	-0.029305	-0.0076663	-4.4852E-05	NaN	16.942	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165690			16842	644	9528	9529							0.015038223544479479
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7663879394531	2	494.766178	987.517802	0.45204	0.00022365	-0.058975	-2.9179E-05	0.39306	0.00019447	494.7662321487841	49.748	2.1279	49.748	49.408	51.536	0					214	78	5	0	0	0	5.9846E-05	5	11439	11439;11484;11527;11576;11623		147.33	100.41	1	18723000			16843	1921	9529	9530	21243;21244;21245;21246;21247	21243					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.78436279296875	2	494.766178	987.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.025	1	58.025	57.525	58.525	0								0	0	0	0.14247	1	14042	14042		36.466	4.3492	1				16844	1921	9529	9530	21248	21248					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7949523925781	2	494.766178	987.517802	0.38181	0.00018891	0.74996	0.00037105	1.1318	0.00055996	494.76666379055945	51.714	0.76016	51.714	51.648	52.408	0					47	27	2	0	0	0	0.11279	1	12076	12076		45.75	19.409	1	250120			16845	1921	9529	9530	21249	21249					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2871398925781	2	494.766178	987.517802	0.2941	0.00014551	2.4328	0.0012037	2.7269	0.0013492	494.767100712635	59.36	0.29063	59.36	59.188	59.479	0					12	9	2	0	0	0	0.22431	1	14405	14405		20.871	1.4322	1	62275			16846	1921	9529	9530	21250	21250					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7664794921875	2	494.766178	987.517802	0.47292	0.00023399	-0.10123	-5.0085E-05	0.37169	0.0001839	494.7662040509469	49.757	2.251	49.802	49.394	51.645	0.044891					242	83	5	0	0	0	5.9846E-05	5	11474	11430;11474;11523;11573;11625		147.33	100.41	1	19215000			16847	1921	9529	9530	21251;21252;21253;21254;21255	21252					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7843322753906	2	494.766178	987.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.727	1	57.813	57.313	58.313	0.085621								0	0	0	0.14247	1	13947	13947		36.466	10.125	1				16848	1921	9529	9530	21256	21256					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.78424072265625	2	494.766178	987.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.892	1	57.978	57.478	58.478	0.085621								0	0	0	0.10248	1	13999	13999		45.75	13.633	1				16849	1921	9529	9530	21257	21257					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2859191894531	2	494.766178	987.517802	0.43373	0.00021459	0.54914	0.0002717	0.98287	0.00048629	494.7665200630558	51.949	0.54313	51.999	51.874	52.417	0.050575					28	19	2	0	0	0	0.11279	1	12241	12241		45.75	19.409	1	215060			16850	1921	9529	9530	21258	21258					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.76641845703125	2	494.766178	987.517802	0.41533	0.00020549	-0.040292	-1.9935E-05	0.37503	0.00018555	494.766239990746	49.738	2.2517	49.759	49.372	51.624	0.020695					250	84	5	0	0	0	5.9846E-05	5	11465	11420;11465;11514;11557;11603		147.33	100.41	1	19738000			16851	1921	9529	9530	21259;21260;21261;21262;21263	21260					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7844543457031	2	494.766178	987.517802	0.33736	0.00016691	2.7889	0.0013799	3.1263	0.0015468	494.7675588285248	57.809	0.37117	57.792	57.716	58.087	-0.0172					18	13	2	0	0	0	0.11229	2	14043	13997;14043		36.466	18.331	1	144440			16852	1921	9529	9530	21264;21265	21265					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.78424072265625	2	494.766178	987.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.413	1	57.396	56.896	57.896	-0.0172								0	0	0	0.14247	1	13847	13847		36.466	11.792	1				16853	1921	9529	9530	21266	21266					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.794921875	2	494.766178	987.517802	0.22233	0.00011	0.76583	0.0003789	0.98816	0.00048891	494.7666650620197	51.783	0.59266	51.791	51.585	52.178	0.0078926					33	21	2	0	0	0	0.076445	1	12086	12086		45.75	19.409	1	271280			16854	1921	9529	9530	21267	21267					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7950744628906	2	494.766178	987.517802	0.18369	9.0885E-05	0.98968	0.00048966	1.1734	0.00058055	494.7665169036698	52.43	0.53929	52.429	51.982	52.521	-0.00080872					27	19	2	0	0	0	0.11279	1	12190	12190		45.75	19.409	1	228510			16855	1921	9529	9530	21268	21268					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7950744628906	2	494.766178	987.517802	0.45488	0.00022506	1.6712	0.00082686	2.1261	0.0010519	494.76675089965164	53.632	0.13072	53.622	53.531	53.662	-0.0096054					5	4	2	0	0	0	0.22431	1	12651	12651		20.871	0	1	207710			16856	1921	9529	9530	21269	21269					0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	494.766178	987.517802	0.4624	0.00022878	-0.41087	-0.00020329	0.051527	2.5494E-05	494.7659872140622	52.469	0.35926	52.469	52.408	52.767	0	0.019973	-0.001161	NaN	45.75	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238050			16857	1921	9529	9530							0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	494.766178	987.517802	0.11479	5.6794E-05	0.87329	0.00043208	0.98808	0.00048887	494.76633524226565	59.655	0.083801	59.75	59.687	59.771	0.095093	0.26937	-0.0015466	NaN	20.871	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107280			16858	1921	9529	9530							0.023543926227148404
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENST00000568980.1_1_15:34781792-34782686:-|nuORF;nc|ENSG00000104824|P14866-2|HNRNPL;ENSG00000104824|ENST00000221419|HNRNPL	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENST00000568980.1_1_15:34781792-34782686:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	494.766178	987.517802	0.51807	0.00025632	3.0851	0.0015264	3.6032	0.0017827	494.7670634867408	59.346	0.26562	59.331	59.222	59.488	-0.014271	-0.14904	0.0006421	NaN	20.871	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62257			16859	1921	9529	9530							0.023543926227148404
IYIATVEAF	9	Unmodified	_IYIATVEAF_					0	0	0		nc|ENSG00000163071|Q8TC71-2|SPATA18;ENSG00000163071|ENST00000295213|SPATA18	nc|ENSG00000163071|Q8TC71-2|SPATA18	nc|ENSG00000163071|Q8TC71-2|SPATA18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.77783203125	2	513.778951	1025.54335	0.15011	7.7121E-05	-1.1868	-0.00060977	-1.0367	-0.00053265	513.7782710867522	73.946	0.74782	73.915	73.61	74.358	-0.030655					56	26	3	0	0	0	0.0032391	1	18900	18900		100.37	52.026	1	993830			16860	5644	9530	9531	21270	21270					0.03159822354473363
IYIATVEAF	9	Unmodified	_IYIATVEAF_					0	0	0		nc|ENSG00000163071|Q8TC71-2|SPATA18;ENSG00000163071|ENST00000295213|SPATA18	nc|ENSG00000163071|Q8TC71-2|SPATA18	nc|ENSG00000163071|Q8TC71-2|SPATA18	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	513.778951	1025.54335	0.1665	8.5544E-05	-1.2681	-0.00065154	-1.1016	-0.00056599	513.7781994351365	73.861	0.71977	73.913	73.604	74.324	0.052361	-0.014229	-0.00014398	NaN	100.37	46	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1097900			16861	5644	9530	9531							0.03159822354473363
IYIDRFEDL	9	Unmodified	_IYIDRFEDL_					0	0	0		ENSG00000152219|ENST00000282032|ARL14EP	ENSG00000152219|ENST00000282032|ARL14EP	ENSG00000152219|ENST00000282032|ARL14EP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.3031616210938	2	592.303321	1182.59209	0.46936	0.00027801	-1.3053	-0.00077314	-0.83594	-0.00049513	592.3026995758498	62.702	0.66669	62.702	62.45	63.117	0					62	24	3	0	0	0	0.016571	1	15499	15499		69.338	23.317	1	847490			16862	5006	9531	9532	21271	21271					0.008096909235973726
IYIDRFEDL	9	Unmodified	_IYIDRFEDL_					0	0	0		ENSG00000152219|ENST00000282032|ARL14EP	ENSG00000152219|ENST00000282032|ARL14EP	ENSG00000152219|ENST00000282032|ARL14EP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.302978515625	2	592.303321	1182.59209	0.49535	0.0002934	-1.1985	-0.00070988	-0.70315	-0.00041648	592.302784872264	62.603	0.68491	62.7	62.383	63.068	0.096985					59	24	3	0	0	0	0.0048951	1	15451	15451		87.258	41.559	1	864480			16863	5006	9531	9532	21272	21272					0.008096909235973726
IYIDRFEDL	9	Unmodified	_IYIDRFEDL_					0	0	0		ENSG00000152219|ENST00000282032|ARL14EP	ENSG00000152219|ENST00000282032|ARL14EP	ENSG00000152219|ENST00000282032|ARL14EP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	592.303321	1182.59209	0.37715	0.00022339	-1.0445	-0.00061866	-0.66735	-0.00039527	592.3027506528264	62.686	0.72242	62.677	62.413	63.136	-0.0085526	-0.015799	9.8204E-05	NaN	87.258	66	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	914660			16864	5006	9531	9532							0.008096909235973726
IYIDRGVVF	9	Unmodified	_IYIDRGVVF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3065795898438	2	541.305667	1080.59678	0.19972	0.00010811	1.7132	0.00092736	1.9129	0.0010355	541.3062969572164	59.755	0.74703	59.755	59.508	60.255	0					67	26	4	0	0	0	0.032589	2	14597	14550;14597		59.368	23.324	1	2785600			16865	1535	9532	9533	21273;21274	21274					0.059706198569983826
IYIDRGVVF	9	Unmodified	_IYIDRGVVF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.3062133789062	2	541.305667	1080.59678	0.56465	0.00030565	1.5093	0.00081701	2.074	0.0011227	541.3061311981937	59.749	0.81413	59.737	59.459	60.273	-0.011486					66	28	4	0	0	0	0.026579	2	14552	14552;14602		61.602	25.558	1	2795400			16866	1535	9532	9533	21275;21276	21275					0.059706198569983826
IYIDRGVVF	9	Unmodified	_IYIDRGVVF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.305667	1080.59678	0.19972	0.00010811	1.7132	0.00092736	1.9129	0.0010355	541.3062969572164	59.755	0.74703	59.755	59.508	60.255	0	0.027977	1.0898E-05	NaN	61.602	67	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2785600			16867	1535	9532	9533							0.059706198569983826
IYIDRGVVF	9	Unmodified	_IYIDRGVVF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	541.305667	1080.59678	0.20101	0.00010881	1.8377	0.00099476	2.0387	0.0011036	541.3063893702886	59.595	0.61359	59.69	59.491	60.105	0.095089	-0.037624	0.0001457	NaN	61.602	67	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2888000			16868	1535	9532	9533							0.059706198569983826
IYIDWKIIK	9	Unmodified	_IYIDWKIIK_					0	0	0			REV__ENST00000570109.1_1_15:43426051-43427957:+|nuORF	REV__ENST00000570109.1_1_15:43426051-43427957:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.324462890625	2	596.360442	1190.70633	0.16839	0.00010042	-0.059022	-3.5198E-05	0.10937	6.5224E-05	596.3602920240481	65.17	0.48963	65.17	64.884	65.373	0					38	17	3	0	0	0	0.25417	1	16190	16190		8.5933	3.3626	1	283760	+		16869	22409	9533	9534	21277	21277					0.11860625476310815
IYIDWKIIK	9	Unmodified	_IYIDWKIIK_					0	0	0			REV__ENST00000570109.1_1_15:43426051-43427957:+|nuORF	REV__ENST00000570109.1_1_15:43426051-43427957:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	596.360442	1190.70633	0.26075	0.0001555	-0.31309	-0.00018672	-0.052337	-3.1212E-05	596.3601884267448	65.078	0.53207	65.166	64.876	65.408	0.088882	0.0088512	-0.00032354	NaN	12.532	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306530	+		16870	22409	9533	9534							0.11860625476310815
IYIFPFTI	8	Unmodified	_IYIFPFTI_					0	0	0			REV__ENSG00000172769|ENST00000641865|OR5B3	REV__ENSG00000172769|ENST00000641865|OR5B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2901916503906	2	507.288954	1012.56336	0.69823	0.0003542	0.89526	0.00045415	1.5935	0.00080836	507.2896035515165	37.291	0.91333	37.291	37.013	37.926	0					77	32	3	0	0	0	0.33916	1	7671	7671		26.341	0.94196	1	904480	+		16871	17730	9534	9535	21278	21278					0.057576180851015124
IYIGGQEHF	9	Unmodified	_IYIGGQEHF_					0	0	0		ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2640380859375	2	532.263999	1062.51345	0.22147	0.00011788	-0.10438	-5.5556E-05	0.1171	6.2327E-05	532.2637260547847	46.301	0.84395	46.301	46.029	46.873	0					68	30	3	0	0	0	0.0013683	1	10405	10405		118.07	25.246	1	3320000			16872	5341	9535	9536	21279	21279					-0.015311165908542534
IYIGGQEHF	9	Unmodified	_IYIGGQEHF_					0	0	0		ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2640991210938	2	532.263999	1062.51345	0.13821	7.3565E-05	0.071365	3.7985E-05	0.20958	0.00011155	532.2638943635651	46.077	0.7923	46.137	45.844	46.636	0.059837					69	28	4	0	0	0	0.0045335	1	10330	10330		96.367	35.009	1	2722500			16873	5341	9535	9536	21280	21280					-0.015311165908542534
IYIGGQEHF	9	Unmodified	_IYIGGQEHF_					0	0	0		ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	ENSG00000158125|ENST00000379416|XDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.26416015625	2	532.263999	1062.51345	0.47758	0.0002542	-0.28921	-0.00015394	0.18837	0.00010026	532.2637083679124	46.14	0.96632	46.205	45.782	46.748	0.065048					82	34	4	0	0	0	0.014206	2	10328	10328;10377		72.968	15.497	1	3245900			16874	5341	9535	9536	21281;21282	21281					-0.015311165908542534
IYIHLTWQQ	9	Unmodified	_IYIHLTWQQ_					0	0	0			REV__nc|ENSG00000176018|Q7Z3D4-3|LYSMD3	REV__nc|ENSG00000176018|Q7Z3D4-3|LYSMD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.8262939453125	2	601.321848	1200.62914	0.47595	0.0002862	3.2713	0.0019671	3.7473	0.0022533	601.8265106750516	89.697	0.54736	89.696	89.387	89.935	-0.00081635					57	44	2	0	0	0	0.30166	1	23751	23751		8.5933	0.68312	1	94714	+		16875	23098	9536	9537	21283	21283					0.03685407259990825
IYIILTTTAFL	11	Unmodified	_IYIILTTTAFL_					0	0	0		ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.8778076171875	2	634.878665	1267.74278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.75	1	111.74	111.24	112.24	-0.015625								0	0	0	0.38114	1	29071	29071		1.3295	0	1				16876	8121	9537	9538	21284	21284					0.11961457582356161
IYIINVHSM	9	Oxidation (M)	_IYIINVHSM(Oxidation (M))_		IYIINVHSM(1)		IYIINVHSM(120)	0	0	1		ENSG00000105339|ENST00000519811|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;nc|ENSG00000105339|A2RUS2-3|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENSG00000105339|ENST00000519811|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENSG00000105339|ENST00000519811|DENND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.289794921875	2	553.289159	1104.56377	0.60218	0.00033318	-0.16352	-9.0472E-05	0.43866	0.00024271	553.2889475952786	48.027	1.1159	48.027	47.578	48.694	0					105	39	4	0	0	0	0.0013683	4	10932	10932;10978;11030;11051		118.07	49.988	1	9080500			16877	1967;11476	9538	9539	21285;21286;21287;21288	21285		241			0.015666697426240717
IYIINVHSM	9	Oxidation (M)	_IYIINVHSM(Oxidation (M))_		IYIINVHSM(1)		IYIINVHSM(110)	0	0	1		ENSG00000105339|ENST00000519811|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;nc|ENSG00000105339|A2RUS2-3|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENSG00000105339|ENST00000519811|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENSG00000105339|ENST00000519811|DENND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.2896118164062	2	553.289159	1104.56377	0.76262	0.00042195	-0.23012	-0.00012732	0.53249	0.00029462	553.288904728642	48.023	0.973	48.071	47.745	48.718	0.047523					106	35	4	0	0	0	0.0024096	5	10920	10920;10968;11018;11028;11071		106.94	59.495	1	8896300			16878	1967;11476	9538	9539	21289;21290;21291;21292;21293	21289		241			0.015666697426240717
IYIINVHSM	9	Oxidation (M)	_IYIINVHSM(Oxidation (M))_		IYIINVHSM(1)		IYIINVHSM(110)	0	0	1		ENSG00000105339|ENST00000519811|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;nc|ENSG00000105339|A2RUS2-3|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENSG00000105339|ENST00000519811|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENSG00000105339|ENST00000519811|DENND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.2893676757812	2	553.289159	1104.56377	0.5361	0.00029662	-0.33671	-0.0001863	0.19939	0.00011032	553.288972682431	47.969	0.98092	48.012	47.662	48.643	0.04332					123	36	5	0	0	0	0.0024096	4	10918	10918;10968;11019;11024		106.94	44.675	1	9371900			16879	1967;11476	9538	9539	21294;21295;21296;21297	21294		241			0.015666697426240717
IYIITVVGY	9	Unmodified	_IYIITVVGY_					0	0	0		ENSG00000185926|ENST00000328188|OR4C46	ENSG00000185926|ENST00000328188|OR4C46	ENSG00000185926|ENST00000328188|OR4C46	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2685546875	2	520.804968	1039.59538	0.54371	0.00028317	1.3225	0.00068879	1.8663	0.00097196	520.8056889788338	37.128	0.41187	37.221	37.06	37.472	0.093018					21	14	2	0	0	0	0.24739	1	7589	7589		4.756	0.42677	1	227990			16880	7569	9539	9540	21298	21298					0.07716985768252016
IYIKDYVTL	9	Unmodified	_IYIKDYVTL_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103553216-103586042:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3204956054688	2	564.320983	1126.62741	0.27494	0.00015515	-0.41502	-0.0002342	-0.14007	-7.9047E-05	564.3206889842664	62.141	0.93373	62.141	61.755	62.689	0					77	34	3	0	0	0	0.013404	1	15318	15318		74.2	32.36	1	782430			16881	2249	9540	9541	21299	21299					0.06916353451356372
IYIKDYVTL	9	Unmodified	_IYIKDYVTL_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103553216-103586042:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.320556640625	2	564.320983	1126.62741	0.20819	0.00011748	-0.1516	-8.5549E-05	0.056591	3.1936E-05	564.3208244893409	62.092	0.98461	62.189	61.729	62.713	0.096985					72	35	3	0	0	0	0.0041491	1	15304	15304		93.166	49.308	1	905020			16882	2249	9540	9541	21300	21300					0.06916353451356372
IYIKDYVTL	9	Unmodified	_IYIKDYVTL_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103553216-103586042:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.3208618164062	2	564.320983	1126.62741	0.22171	0.00012512	-0.12344	-6.9661E-05	0.098271	5.5456E-05	564.3208156568322	62.142	0.78591	62.133	61.811	62.597	-0.0085564					71	28	3	0	0	0	0.017549	1	15313	15313		67.838	21.817	1	869610			16883	2249	9540	9541	21301	21301					0.06916353451356372
IYIKHPHLF	9	Unmodified	_IYIKHPHLF_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3375244140625	2	584.337301	1166.66005	0.26625	0.00015558	0.23497	0.0001373	0.50123	0.00029289	584.3373467870792	41.643	0.88744	41.643	41.225	42.113	0					72	36	3	0	0	0	0.0085732	4	8939	8939;8982;9022;9076		81.613	81.613	1	4556700			16884	1702	9541	9542	21302;21303;21304;21305	21302					0.08338605364883733
IYIKHPHLF	9	Unmodified	_IYIKHPHLF_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3375244140625	2	584.337301	1166.66005	0.15448	9.0271E-05	0.33707	0.00019696	0.49156	0.00028724	584.3375094231187	41.362	0.60826	41.453	41.106	41.715	0.090252					66	23	4	0	0	0	0.0041925	3	8908	8862;8908;8959		92.822	92.822	1	3290300			16885	1702	9541	9542	21306;21307;21308	21307					0.08338605364883733
IYIKHPHLF	9	Unmodified	_IYIKHPHLF_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3375244140625	2	584.337301	1166.66005	0.40732	0.00023801	0.065608	3.8337E-05	0.47293	0.00027635	584.3372627279975	41.412	0.63527	41.508	41.065	41.7	0.096622					67	24	4	0	0	0	0.0085732	3	8840	8840;8887;8940		81.613	81.613	1	4047000			16886	1702	9541	9542	21309;21310;21311	21309					0.08338605364883733
IYIKHPHLF	9	Unmodified	_IYIKHPHLF_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3375854492188	2	584.337301	1166.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.751	1	41.847	41.347	42.347	0.096626								0	0	0	0.013942	1	9021	9021		74.423	43.786	1				16887	1702	9541	9542	21312	21312					0.08338605364883733
IYIKQIKTF	9	Unmodified	_IYIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3529663085938	2	577.352617	1152.69068	0.22734	0.00013126	0.20614	0.00011902	0.43348	0.00025027	577.3526285261372	44.077	1.7665	44.077	43.819	45.586	0					170	64	5	0	0	0	3.0646E-11	4	9703	9703;9747;9793;9841		193.29	118.37	1	9820400			16888	1836	9542	9543	21313;21314;21315;21316	21313					0.12044338959276502
IYIKQIKTF	9	Unmodified	_IYIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3530883789062	2	577.352617	1152.69068	0.35659	0.00020588	0.10641	6.1438E-05	0.463	0.00026732	577.352559107545	43.916	1.6441	43.993	43.684	45.328	0.077515					157	60	4	0	0	0	3.0646E-11	3	9643	9643;9686;9736		193.29	114.57	1	9641000			16889	1836	9542	9543	21317;21318;21319	21317					0.12044338959276502
IYIKQIKTF	9	Unmodified	_IYIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3526611328125	2	577.352617	1152.69068	0.26832	0.00015492	0.1533	8.8506E-05	0.42162	0.00024342	577.352622975856	43.862	1.6637	43.946	43.657	45.321	0.083996					178	61	5	0	0	0	1.6153E-16	3	9624	9624;9674;9727		208.15	133.22	1	11093000			16890	1836	9542	9543	21320;21321;21322	21320					0.12044338959276502
IYILDPELL	9	Unmodified	_IYILDPELL_					0	0	0		ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000529698.1_1_11:46396583-46398763:+|nuORF	ENST00000528173.5_1_11:46391373-46400221:+|nuORF	ENST00000528173.5_1_11:46391373-46400221:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.8157958984375	2	544.815533	1087.61651	0.48974	0.00026682	-0.097307	-5.3014E-05	0.39243	0.0002138	544.8154671385926	90.86	2.067	90.86	90.006	92.073	0					265	155	3	0	0	0	0.0014051	2	24108	24108;24399		117.6	79.625	1	2198900			16891	11581	9543	9544	21323;21324	21323					0.07620951077092286
IYILDPELL	9	Unmodified	_IYILDPELL_					0	0	0		ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000529698.1_1_11:46396583-46398763:+|nuORF	ENST00000528173.5_1_11:46391373-46400221:+|nuORF	ENST00000528173.5_1_11:46391373-46400221:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.8157958984375	2	544.815533	1087.61651	0.63031	0.0003434	-0.27983	-0.00015245	0.35049	0.00019095	544.8153900618117	90.689	1.1349	90.779	90.008	91.143	0.090668					204	88	4	0	0	0	0.00268	1	24056	24056		104.8	74.163	1	1959000			16892	11581	9543	9544	21325	21325					0.07620951077092286
IYILDPELL	9	Unmodified	_IYILDPELL_					0	0	0		ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000529698.1_1_11:46396583-46398763:+|nuORF	ENST00000528173.5_1_11:46391373-46400221:+|nuORF	ENST00000528173.5_1_11:46391373-46400221:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3165893554688	2	544.815533	1087.61651	0.61198	0.00033342	-0.58162	-0.00031688	0.030363	1.6542E-05	544.8151194442272	91.097	0.97628	91.188	91.11	92.087	0.090675					151	68	3	0	0	0	0.17611	1	24336	24336		34.102	21.571	1	482490			16893	11581	9543	9544	21326	21326					0.07620951077092286
IYILDPELL	9	Unmodified	_IYILDPELL_					0	0	0		ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000529698.1_1_11:46396583-46398763:+|nuORF	ENST00000528173.5_1_11:46391373-46400221:+|nuORF	ENST00000528173.5_1_11:46391373-46400221:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.81591796875	2	544.815533	1087.61651	0.74419	0.00040545	-0.21484	-0.00011705	0.52935	0.0002884	544.8153290420212	90.83	0.71232	90.83	90.524	91.236	0.0003891					153	54	4	0	0	0	0.0032391	1	24103	24103		100.37	64.244	1	2222800			16894	11581	9543	9544	21327	21327					0.07620951077092286
IYIPTLAVL	9	Unmodified	_IYIPTLAVL_					0	0	0		nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENST00000606782.1_1_20:44521054-44521549:+|nuORF;ENST00000485627.1_1_20:44520959-44522735:+|nuORF	nc|ENSG00000064601|P10619-2|CTSA	nc|ENSG00000064601|P10619-2|CTSA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.8152160644531	2	501.815336	1001.61612	0.34133	0.00017129	-0.39371	-0.00019757	-0.052381	-2.6285E-05	501.81510225487256	91.386	0.70261	91.386	91.163	91.866	0					139	52	4	0	0	0	0.0061338	3	24262	24223;24262;24302		85.357	34.502	1	726260			16895	789	9544	9545	21328;21329;21330	21329					0.11537576147907203
IYIPTLAVL	9	Unmodified	_IYIPTLAVL_					0	0	0		nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENST00000606782.1_1_20:44521054-44521549:+|nuORF;ENST00000485627.1_1_20:44520959-44522735:+|nuORF	nc|ENSG00000064601|P10619-2|CTSA	nc|ENSG00000064601|P10619-2|CTSA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.81536865234375	2	501.815336	1001.61612	0.355	0.00017814	-0.52373	-0.00026282	-0.16873	-8.4672E-05	501.8150572799962	91.172	0.68266	91.263	91.143	91.826	0.090675					109	50	3	0	0	0	0.010938	3	24210	24174;24210;24247		77.984	33.577	1	651840			16896	789	9544	9545	21331;21332;21333	21332					0.11537576147907203
IYIPTLAVL	9	Unmodified	_IYIPTLAVL_					0	0	0		nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENST00000606782.1_1_20:44521054-44521549:+|nuORF;ENST00000485627.1_1_20:44520959-44522735:+|nuORF	nc|ENSG00000064601|P10619-2|CTSA	nc|ENSG00000064601|P10619-2|CTSA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.8149719238281	2	501.815336	1001.61612	0.49143	0.00024661	-0.70094	-0.00035174	-0.20951	-0.00010514	501.8149462927886	91.339	0.68301	91.34	91.165	91.848	0.00046539					103	46	4	0	0	0	0.017871	2	24202	24202;24288		67.344	22.937	1	1070700			16897	789	9544	9545	21334;21335	21334					0.11537576147907203
IYIPVLPPHL	10	Unmodified	_IYIPVLPPHL_					0	0	0		nc|ENSG00000213047|Q6P3S1-3|DENND1B;nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B;ENSG00000213047|ENST00000620048|DENND1B	nc|ENSG00000213047|Q6P3S1-3|DENND1B	nc|ENSG00000213047|Q6P3S1-3|DENND1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7783203125	2	581.35516	1160.69577	0.10494	6.1008E-05	0.79954	0.00046482	0.90448	0.00052582	581.857407772927	76.426	0.349	76.479	76.345	76.694	0.053421					14	12	2	0	0	0	0.31395	1	19652	19652		12.532	3.9383	1	77893			16898	12940	9545	9546	21336	21336					0.12184642821898706
IYIQNSDY	8	Unmodified	_IYIQNSDY_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000480964.5_1_7:44801441-44805210:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF;ENST00000463056.5_1_7:44799906-44807219:+|nuORF	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3018798828125	2	508.24019	1014.46583	0.5525	0.0002808	1.4989	0.00076178	2.0514	0.0010426	508.24089384873633	48.156	0.649	48.156	47.987	48.636	0					34	22	2	0	0	0	0.34046	1	11106	11106		14.582	0.67564	1	552990			16899	3048	9546	9547	21337	21337					-0.04082815581716659
IYIRKAPR	8	Unmodified	_IYIRKAPR_					0	0	0		KCNQ1|p.K422Sfs*10|1|0.3|ENSG00000053918|chr11:2588719-2588719|A/-|frameshift_variant;nc|ENSG00000053918|P51787-2|KCNQ1;ENSG00000053918|ENST00000155840|KCNQ1	KCNQ1|p.K422Sfs*10|1|0.3|ENSG00000053918|chr11:2588719-2588719|A/-|frameshift_variant	KCNQ1|p.K422Sfs*10|1|0.3|ENSG00000053918|chr11:2588719-2588719|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.2537841796875	2	508.821818	1015.62908	0.42495	0.00021622	1.5277	0.00077731	1.9526	0.00099353	508.82257627766086	44.607	0.16531	44.682	44.583	44.749	0.075047					8	5	2	0	0	0	0.34092	1	9893	9893		4.756	0	1	87243			16900	682	9547	9548	21338	21338					0.12189452050643013
IYISSDYVF	9	Unmodified	_IYISSDYVF_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B;nc|ENSG00000038274|Q9NZL9-3|MAT2B;nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.7752685546875	2	553.773865	1105.53318	0.6874	0.00038066	1.5355	0.00085032	2.2229	0.001231	553.7750681183013	74.598	0.50398	74.598	74.343	74.847	0					38	17	3	0	0	0	0.015402	1	19116	19116		71.134	40.909	1	475030			16901	588	9548	9549	21339	21339					-0.015367853707630275
IYISSDYVF	9	Unmodified	_IYISSDYVF_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B;nc|ENSG00000038274|Q9NZL9-3|MAT2B;nc|ENSG00000038274|Q9NZL9-4|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.775390625	2	553.773865	1105.53318	0.47704	0.00026417	1.5583	0.00086294	2.0353	0.0011271	553.7750073726421	74.615	0.48138	74.584	74.358	74.839	-0.030663					35	16	3	0	0	0	0.0041925	1	19111	19111		92.822	56.778	1	605640			16902	588	9548	9549	21340	21340					-0.015367853707630275
IYISTLKTEF	10	Unmodified	_IYISTLKTEF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.837158203125	2	607.836997	1213.65944	0.84432	0.00051321	-0.46122	-0.00028035	0.3831	0.00023286	607.8365784259705	60.683	0.49707	60.683	60.495	60.992	0					55	17	4	0	0	0	1.4539E-08	3	14882	14837;14882;14938		162.31	55.127	1	2185500			16903	1609	9549	9550	21341;21342;21343	21342					0.061157211345062024
IYISTLKTEF	10	Unmodified	_IYISTLKTEF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.8370361328125	2	607.836997	1213.65944	0.82407	0.0005009	-0.50495	-0.00030693	0.31911	0.00019397	607.8365304112907	60.572	0.58779	60.669	60.477	61.065	0.096989					56	20	4	0	0	0	1.0144E-05	3	14840	14794;14840;14889		150.62	54.508	1	2438800			16904	1609	9549	9550	21344;21345;21346	21345					0.061157211345062024
IYISTLKTEF	10	Unmodified	_IYISTLKTEF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.8365478515625	2	607.836997	1213.65944	0.75373	0.00045814	-0.35674	-0.00021684	0.39699	0.00024131	607.8365835437072	60.719	0.45609	60.709	60.487	60.944	-0.0094566					52	16	4	0	0	0	2.8213E-05	2	14831	14831;14883		139.38	58.136	1	2455400			16905	1609	9549	9550	21347;21348	21347					0.061157211345062024
IYITELLKKLQ	11	Unmodified	_IYITELLKKLQ_					0	0	0		ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2835693359375	3	454.618273	1360.83299	0.22481	0.0001022	-0.45745	-0.00020796	-0.23264	-0.00010576	454.6180785269327	89.985	0.90075	90.075	89.964	90.865	0.090668					97	70	2	0	0	0	0.33347	1	23869	23869		0.08335	0.08335	1	954620			16906	1244	9550	9551	21349	21349					0.1670050691079723
IYITGSSII	9	Unmodified	_IYITGSSII_					0	0	0		nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B;ENST00000472277.5_1_1:44440756-44442727:+|nuORF;ENST00000496131.1_1_1:44440655-44442052:+|nuORF;ENST00000532072.1_1_1:44441705-44442052:+|nuORF	nc|ENSG00000117410|Q99437-2|ATP6V0B;ENST00000532072.1_1_1:44441705-44442052:+|nuORF	nc|ENSG00000117410|Q99437-2|ATP6V0B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.77899169921875	2	483.778951	965.543348	0.21438	0.00010371	-0.42689	-0.00020652	-0.21251	-0.00010281	483.7789500711074	68.026	0.51976	68.026	67.809	68.329	0					36	18	3	0	0	0	0.01083	1	17128	17128		78.149	13.913	1	406030			16907	2791;11633	9551	9552	21350	21350					0.059198223544854045
IYITGSSII	9	Unmodified	_IYITGSSII_					0	0	0		nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B;ENST00000472277.5_1_1:44440756-44442727:+|nuORF;ENST00000496131.1_1_1:44440655-44442052:+|nuORF;ENST00000532072.1_1_1:44441705-44442052:+|nuORF	nc|ENSG00000117410|Q99437-2|ATP6V0B;ENST00000532072.1_1_1:44441705-44442052:+|nuORF	nc|ENSG00000117410|Q99437-2|ATP6V0B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7791442871094	2	483.778951	965.543348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.965	1	68.043	67.543	68.543	0.078041								0	0	0	0.057388	1	17088	17088		58.679	3.9053	1				16908	2791;11633	9551	9552	21351	21351					0.059198223544854045
IYITMTYTR	9	Unmodified	_IYITMTYTR_					0	0	0		ENSG00000170293|ENST00000307526|CMTM8	ENSG00000170293|ENST00000307526|CMTM8	ENSG00000170293|ENST00000307526|CMTM8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.7843627929688	2	581.302267	1160.58998	0.2573	0.00014957	-3.4387	-0.0019989	-3.1814	-0.0018494	581.3001540605522	81.676	0.23747	81.676	81.504	81.741	0					11	9	2	0	0	0	0.25706	1	21287	21287		6.7232	2.3939	1	51132			16909	6440	9552	9553	21352	21352					0.016109389141092834
IYITMTYTR	9	Unmodified	_IYITMTYTR_					0	0	0		ENSG00000170293|ENST00000307526|CMTM8	ENSG00000170293|ENST00000307526|CMTM8	ENSG00000170293|ENST00000307526|CMTM8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	581.302267	1160.58998	0.0003734	2.1706E-07	-2.9589	-0.00172	-2.9585	-0.0017198	581.3007629947743	81.55	0.27517	81.619	81.4	81.675	0.068993	-0.028473	0.00020071	NaN	19.257	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64416			16910	6440	9552	9553							0.016109389141092834
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.30126953125	2	599.300581	1196.58661	0.45449	0.00027238	0.32718	0.00019608	0.78167	0.00046846	599.3008116327095	91.671	0.94029	91.671	91.38	92.32	0					166	66	4	0	0	0	5.0285E-07	6	24336	24295;24336;24375;24421;24460;24482		160.52	118.56	1	731950			16911	4177	9553	9554	21353;21354;21355;21356;21357;21358	21354					-0.003819878682406852
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.30078125	2	599.300581	1196.58661	0.50905	0.00030507	-0.09288	-5.5663E-05	0.41617	0.00024941	599.3004769557182	91.535	0.69294	91.625	91.378	92.071	0.090668					125	48	3	0	0	0	5.0285E-07	5	24307	24265;24307;24348;24369;24423		160.52	110.96	1	826130			16912	4177	9553	9554	21359;21360;21361;21362;21363	21360					-0.003819878682406852
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.3007202148438	2	599.300581	1196.58661	0.5479	0.00032835	-0.012211	-7.3183E-06	0.53569	0.00032104	599.3005656238939	91.629	0.93635	91.629	91.381	92.317	0.00046539					146	61	4	0	0	0	1.3869E-07	5	24341	24300;24341;24384;24434;24476		174.73	125.17	1	858980			16913	4177	9553	9554	21364;21365;21366;21367;21368	21365					-0.003819878682406852
IYIYININ	8	Unmodified	_IYIYININ_					0	0	0			REV__ENST00000293618.12_1_12:50869692-50869887:+|nuORF	REV__ENST00000293618.12_1_12:50869692-50869887:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2689819335938	2	513.286943	1024.55933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.313	1	72.313	71.813	72.813	0								0	0	0	0.35251	1	18427	18427		13.508	0	1		+		16914	19766	9554	9555	21369	21369					0.04803528591378381
IYKDLPFETL	10	Unmodified	_IYKDLPFETL_					0	0	0		ENSG00000154719|ENST00000352957|MRPL39;nc|ENSG00000154719|Q9NYK5-2|MRPL39	ENSG00000154719|ENST00000352957|MRPL39	ENSG00000154719|ENST00000352957|MRPL39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8380126953125	2	619.836997	1237.65944	0.3092	0.00019165	0.13797	8.5521E-05	0.44717	0.00027718	619.837246647124	66.025	0.5304	66.012	65.748	66.278	-0.013588					44	18	3	0	0	0	0.032393	1	16491	16491		62.869	22.919	1	269160			16915	5141	9555	9556	21370	21370					0.050117211345195756
IYKDLPFETL	10	Unmodified	_IYKDLPFETL_					0	0	0		ENSG00000154719|ENST00000352957|MRPL39;nc|ENSG00000154719|Q9NYK5-2|MRPL39	ENSG00000154719|ENST00000352957|MRPL39	ENSG00000154719|ENST00000352957|MRPL39	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	619.836997	1237.65944	0.37472	0.00023226	0.22652	0.0001404	0.60123	0.00037267	619.8370832674059	65.83	0.51997	65.919	65.732	66.251	0.088882	-0.046264	3.8709E-05	NaN	62.869	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271750			16916	5141	9555	9556							0.050117211345195756
IYKDRLRIN	9	Unmodified	_IYKDRLRIN_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2;EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	nc|ENSG00000079819|O43491-3|EPB41L2;EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.7916870117188	2	595.853847	1189.69314	0.28709	0.00017107	-0.25967	-0.00015473	0.02742	1.6338E-05	595.8536263838669	46.19	0.26953	46.19	46.055	46.324	0					13	9	2	0	0	0	0.22061	1	10413	10413		24.021	3.5669	1	395290			16917	1142;12336	9556	9557	21371	21371					0.10588187416942674
IYKDSSTFL	9	Unmodified	_IYKDSSTFL_					0	0	0		ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2794189453125	2	537.279315	1072.54408	0.61401	0.00032989	-0.044467	-2.3891E-05	0.56954	0.000306	537.2792152049815	45.057	0.87415	45.057	44.739	45.614	0					87	31	4	0	0	0	0.0054984	2	10052	10005;10052		86.332	44.519	1	1678700			16918	4646	9557	9558	21372;21373	21373					0.010706170035291507
IYKDSSTFL	9	Unmodified	_IYKDSSTFL_					0	0	0		ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2794799804688	2	537.279315	1072.54408	0.48468	0.00026041	0.1285	6.904E-05	0.61318	0.00032945	537.2792856690905	44.798	1.0017	44.867	44.627	45.628	0.068569					84	35	4	0	0	0	0.0041491	2	9943	9943;9992		93.166	57.039	1	1707700			16919	4646	9557	9558	21374;21375	21374					0.010706170035291507
IYKDSSTFL	9	Unmodified	_IYKDSSTFL_					0	0	0		ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2793579101562	2	537.279315	1072.54408	0.67407	0.00036217	-0.10881	-5.8463E-05	0.56526	0.0003037	537.2791997680517	44.808	0.91336	44.883	44.583	45.497	0.075047					98	33	5	0	0	0	0.0041491	2	9932	9932;9986		93.166	54.008	1	1723200			16920	4646	9557	9558	21376;21377	21376					0.010706170035291507
IYKDVMITY	9	Unmodified	_IYKDVMITY_					0	0	0			REV__ENST00000525964.6_1_11:134022841-134052943:-|nuORF	REV__ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.8598022460938	2	573.299193	1144.58383	0.38715	0.00022195	-0.96047	-0.00055064	-0.57331	-0.00032868	573.2997489936828	59.31	0.1476	59.296	59.222	59.37	-0.014267					6	4	2	0	0	0	0.25202	1	14415	14415		10.824	2.2306	1	33827	+		16921	16545	9558	9559	21378	21378					0.017324206825833244
IYKEEREYF	9	Unmodified	_IYKEEREYF_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2115478515625	3	426.211794	1275.61355	-0.76189	-0.00032473	0.4361	0.00018587	-0.32579	-0.00013886	426.21208607594565	35.26	0.63078	35.26	34.917	35.547	0					57	22	4	0	0	0	0.2141	1	7014	7014		21.59	12.046	1	728850			16922	5589	9559	9560	21379	21379					-0.013229240477357962
IYKEEREYF	9	Unmodified	_IYKEEREYF_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2114562988281	3	426.211794	1275.61355	-0.64027	-0.00027289	0.22849	9.7385E-05	-0.41178	-0.0001755	426.2119462479804	35.214	0.87626	35.289	34.99	35.867	0.075306					73	31	4	0	0	0	0.14535	1	7019	7019		31.636	16.679	1	843990			16923	5589	9559	9560	21380	21380					-0.013229240477357962
IYKEEREYF	9	Unmodified	_IYKEEREYF_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.2116394042969	3	426.211794	1275.61355	-0.87572	-0.00037324	0.6691	0.00028518	-0.20663	-8.8066E-05	426.2121350787736	35.163	0.52009	35.241	34.975	35.495	0.077377					59	18	4	0	0	0	0.12765	1	6984	6984		34.222	20.004	1	948240			16924	5589	9559	9560	21381	21381					-0.013229240477357962
IYKEEREYF	9	Unmodified	_IYKEEREYF_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	426.211794	1275.61355	-0.76189	-0.00032473	0.4361	0.00018587	-0.32579	-0.00013886	426.21208607594565	35.26	0.63078	35.26	34.917	35.547	0	-0.003098	-6.8064E-05	NaN	34.222	57	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	728850			16925	5589	9559	9560							-0.013229240477357962
IYKEEREYF	9	Unmodified	_IYKEEREYF_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	426.211794	1275.61355	-0.64027	-0.00027289	0.22849	9.7385E-05	-0.41178	-0.0001755	426.2119462479804	35.214	0.87626	35.289	34.99	35.867	0.075306	0.025699	-0.00033352	NaN	34.222	73	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	843990			16926	5589	9559	9560							-0.013229240477357962
IYKHEALV	8	Unmodified	_IYKHEALV_					0	0	0			REV__DCN|p.G287V|1|0.28|ENSG00000011465|chr12:91151679-91151679|C/A|missense_variant	REV__DCN|p.G287V|1|0.28|ENSG00000011465|chr12:91151679-91151679|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.28961181640625	2	486.779285	971.544017	0.36813	0.0001792	-0.015519	-7.5544E-06	0.35261	0.00017164	486.7793237072611	67.889	0.72546	67.968	67.715	68.44	0.078041					45	25	3	0	0	0	0.30503	1	17171	17171		23.148	0	1	394400	+		16927	13292	9560	9561	21382	21382					0.0571066179418267
IYKIDFVRF	9	Unmodified	_IYKIDFVRF_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119	ENSG00000109103|ENST00000335765|UNC119	ENSG00000109103|ENST00000335765|UNC119	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.8426513671875	2	600.842416	1199.67028	0.41061	0.00024671	-0.11452	-6.8808E-05	0.29609	0.0001779	600.8422056598373	61.945	0.7214	61.945	61.703	62.424	0					61	26	3	0	0	0	0.038672	2	15236	15236;15283		57.108	33.087	1	1333900			16928	2235	9561	9562	21383;21384	21383					0.07843168299450554
IYKIDFVRF	9	Unmodified	_IYKIDFVRF_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119	ENSG00000109103|ENST00000335765|UNC119	ENSG00000109103|ENST00000335765|UNC119	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.8423461914062	2	600.842416	1199.67028	0.14337	8.6146E-05	0.26121	0.00015694	0.40458	0.00024309	600.8423899730917	61.887	0.79239	61.984	61.729	62.521	0.096989					72	28	4	0	0	0	0.038672	2	15220	15220;15270		57.108	31.708	1	1119200			16929	2235	9561	9562	21385;21386	21385					0.07843168299450554
IYKIDFVRF	9	Unmodified	_IYKIDFVRF_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119	ENSG00000109103|ENST00000335765|UNC119	ENSG00000109103|ENST00000335765|UNC119	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8425903320312	2	600.842416	1199.67028	0.16933	0.00010174	0.13015	7.8198E-05	0.29948	0.00017994	600.8423500680876	61.953	0.70897	61.944	61.675	62.384	-0.0085526					65	25	3	0	0	0	0.038672	2	15226	15226;15275		57.108	33.087	1	1664300			16930	2235	9561	9562	21387;21388	21387					0.07843168299450554
IYKIGQGYLIK	11	Unmodified	_IYKIGQGYLIK_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000481985.5_1_22:39710087-39711482:-|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.90625	3	432.595579	1294.76491	-0.2273	-9.8328E-05	0.2364	0.00010227	0.0091062	3.9393E-06	432.59547973783856	41.476	1.2634	41.476	40.388	41.651	0					136	46	4	0	0	0	0.33146	1	8797	8797		2.2527	0	1	1987400			16931	1567	9562	9563	21389	21389					0.12931682050793825
IYKKEKRL	8	Unmodified	_IYKKEKRL_					0	0	0			REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7879028320312	2	539.342584	1076.67061	0.60407	0.0003258	3.3823	0.0018242	3.9864	0.00215	539.3442506776544	53.293	0.38932	53.283	53.142	53.531	-0.0096054					19	14	2	0	0	0	0.34092	1	12538	12538		13.508	1.8676	1	210670	+		16932	23203	9563	9564	21390	21390					0.13534588019319926
IYKKLFIF	8	Unmodified	_IYKKLFIF_					0	0	0			REV__ENSG00000137494|ENST00000533342|ANKRD42	REV__ENSG00000137494|ENST00000533342|ANKRD42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7393188476562	2	536.333696	1070.65284	0.5665	0.00030383	-0.5387	-0.00028892	0.027796	1.4908E-05	536.3333264031253	62.541	0.36861	62.541	62.292	62.661	0					19	13	2	0	0	0	0.34147	1	15410	15410		11.114	0	1	70954	+		16933	15865	9564	9565	21391	21391					0.12033872764459375
IYKKLFIF	8	Unmodified	_IYKKLFIF_					0	0	0			REV__ENSG00000137494|ENST00000533342|ANKRD42	REV__ENSG00000137494|ENST00000533342|ANKRD42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7394409179688	2	536.333696	1070.65284	0.43565	0.00023366	-0.85467	-0.00045839	-0.41901	-0.00022473	536.333281001234	62.299	0.3025	62.396	62.332	62.635	0.096985					15	10	2	0	0	0	0.34147	1	15367	15367		11.114	0	1	81823	+		16934	15865	9564	9565	21392	21392					0.12033872764459375
IYKKSAVQLF	10	Unmodified	_IYKKSAVQLF_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1;ENST00000473474.5_1_1:111715860-111726929:+|nuORF	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.3399658203125	2	598.855524	1195.69649	0.74443	0.00044581	-0.88465	-0.00052978	-0.14021	-8.3968E-05	598.8547548064464	40.064	0.29354	40.157	40.02	40.313	0.09267					13	9	2	0	0	0	0.31794	1	8517	8517		8.1555	8.1555	1	79380			16935	3767	9565	9566	21393	21393					0.10647437470947807
IYKKYPNMF	9	Oxidation (M)	_IYKKYPNM(Oxidation (M))F_		IYKKYPNM(1)F		IYKKYPNM(42)F	0	0	1		ENST00000492628.1_1_7:129040195-129045055:+|nuORF;nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2	ENST00000492628.1_1_7:129040195-129045055:+|nuORF	ENST00000492628.1_1_7:129040195-129045055:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.3125610351562	2	610.312635	1218.61072	0.20243	0.00012354	-0.87565	-0.00053442	-0.67323	-0.00041088	610.3124086562008	31.05	1.2254	31.078	30.218	31.443	0.027946					122	43	4	0	0	0	0.079752	1	5695	5695		41.84	27.934	1	740320			16936	5358	9566	9567	21394	21394		648			0.010155292937497507
IYKKYPNMF	9	Oxidation (M)	_IYKKYPNM(Oxidation (M))F_		IYKKYPNM(1)F		IYKKYPNM(42)F	0	0	1		ENST00000492628.1_1_7:129040195-129045055:+|nuORF;nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2	ENST00000492628.1_1_7:129040195-129045055:+|nuORF	ENST00000492628.1_1_7:129040195-129045055:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.312744140625	2	610.312635	1218.61072	0.14753	9.0042E-05	-0.92594	-0.00056512	-0.77841	-0.00047507	610.312405027868	31.029	1.1845	31.056	30.22	31.405	0.027157					122	42	4	0	0	0	0.079752	1	5671	5671		41.84	27.934	1	628520			16937	5358	9566	9567	21395	21395		648			0.010155292937497507
IYKLLAELFY	10	Unmodified	_IYKLLAELFY_					0	0	0			REV__ENSG00000174373|ENST00000680220|RALGAPA1	REV__ENSG00000174373|ENST00000680220|RALGAPA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.8533325195312	2	636.865557	1271.71656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.708	1	65.697	65.197	66.197	-0.011337								0	0	0	0.34755	1	16396	16396		15.847	0	1		+		16938	17829	9567	9568	21396	21396					0.09157188410904382
IYKLLWREL	9	Unmodified	_IYKLLWREL_					0	0	0		ENSG00000039987|ENST00000553030|BEST2	ENSG00000039987|ENST00000553030|BEST2	ENSG00000039987|ENST00000553030|BEST2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2204284667969	3	411.916653	1232.72813	-0.37523	-0.00015456	-2.3061	-0.0009499	-2.6813	-0.0011045	412.25007452645815	39.707	0.34873	39.707	39.454	39.803	0					18	12	2	0	0	0	0.25431	1	8406	8406		9.3831	0.40688	1	102000			16939	600	9568	9569	21397	21397					0.12107430224887139
IYKLLWREL	9	Unmodified	_IYKLLWREL_					0	0	0		ENSG00000039987|ENST00000553030|BEST2	ENSG00000039987|ENST00000553030|BEST2	ENSG00000039987|ENST00000553030|BEST2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2204895019531	3	411.916653	1232.72813	0.18384	7.5726E-05	1.1847	0.000488	1.3685	0.00056373	411.9167431240851	39.361	0.2732	39.46	39.292	39.565	0.099407					11	9	2	0	0	0	0.25431	1	8318	8318		9.3831	2.7528	1	77352			16940	600	9568	9569	21398	21398					0.12107430224887139
IYKLSPETT	9	Unmodified	_IYKLSPETT_					0	0	0		nc|ENSG00000142166|P17181-2|IFNAR1;nc|ENSG00000142166|P17181-4|IFNAR1;nc|ENSG00000142166|P17181-3|IFNAR1;ENSG00000142166|ENST00000270139|IFNAR1	nc|ENSG00000142166|P17181-2|IFNAR1	nc|ENSG00000142166|P17181-2|IFNAR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3035278320312	2	526.28714	1050.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.66	1	106.66	106.16	107.16	0								0	0	0	0.23852	1	28176	28176		10.074	2.1638	1				16941	4425	9569	9570	21399	21399					0.03646903520575506
IYKLSYAF	8	Unmodified	_IYKLSYAF_					0	0	0		nc|ENSG00000145428|Q8N4F7-2|RNF175;ENST00000503694.5_1_4:154636517-154669813:-|nuORF;ENSG00000145428|ENST00000347063|RNF175	nc|ENSG00000145428|Q8N4F7-2|RNF175	nc|ENSG00000145428|Q8N4F7-2|RNF175	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2805480957031	2	502.776211	1003.53787	0.38817	0.00019516	0.80912	0.0004068	1.1973	0.00060197	502.7769404692695	86.805	2.1129	86.892	85.812	87.925	0.08709					222	92	4	0	0	0	0.43727	1	22752	22752		10.183	4.423	1	1408400			16942	4652	9570	9571	21400	21400					0.03624143562649351
IYKNSVSII	9	Unmodified	_IYKNSVSII_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000490218.6_1_17:30212004-30222015:-|nuORF;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.8057861328125	2	518.8055	1035.59645	0.74239	0.00038516	-0.86855	-0.00045061	-0.12616	-6.5452E-05	518.8050512642517	54.628	0.51749	54.628	54.374	54.891	0					58	18	4	0	0	0	0.12846	1	13023	13023		34.102	5.0209	1	1025700			16943	2204	9571	9572	21401	21401					0.08007200137149084
IYKNSVSII	9	Unmodified	_IYKNSVSII_					0	0	0		ENSG00000108651|ENST00000261708|UTP6;ENST00000490218.6_1_17:30212004-30222015:-|nuORF;ENST00000583408.5_1_17:30207568-30228646:-|nuORF	ENSG00000108651|ENST00000261708|UTP6	ENSG00000108651|ENST00000261708|UTP6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	518.8055	1035.59645	0.6201	0.00032171	-0.56057	-0.00029082	0.059535	3.0887E-05	518.8052101460365	54.57	0.4808	54.633	54.382	54.863	0.063202	-0.019559	0.00022285	NaN	34.102	54	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	922500			16944	2204	9571	9572							0.08007200137149084
IYKPGQTVKF	10	Unmodified	_IYKPGQTVKF_					0	0	0		ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.8399658203125	2	590.839874	1179.66519	0.77173	0.00045597	-0.0024497	-1.4474E-06	0.76928	0.00045452	590.8396400224731	37.538	0.61206	37.538	37.314	37.926	0					43	21	3	0	0	0	0.032393	1	7739	7739		62.869	38.848	1	668160			16945	6891	9572	9573	21402	21402					0.082548644368444
IYKPGQTVKF	10	Unmodified	_IYKPGQTVKF_					0	0	0		ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.8401489257812	2	590.839874	1179.66519	0.44083	0.00026046	0.36818	0.00021754	0.80901	0.00047799	590.8400440215646	37.42	0.54535	37.508	37.247	37.793	0.08741					45	19	3	0	0	0	0.092344	1	7711	7711		49.742	25.721	1	520070			16946	6891	9572	9573	21403	21403					0.082548644368444
IYKPGQTVKF	10	Unmodified	_IYKPGQTVKF_					0	0	0		ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.8403930664062	2	590.839874	1179.66519	0.42752	0.0002526	0.37454	0.00022129	0.80206	0.00047389	590.839979533028	37.392	0.61845	37.485	37.197	37.816	0.093018					45	22	3	0	0	0	0.058704	1	7690	7690		57.108	26.471	1	605050			16947	6891	9572	9573	21404	21404					0.082548644368444
IYKPVTDFF	9	Unmodified	_IYKPVTDFF_					0	0	0		ENST00000472420.5_1_2:44123526-44126707:-|nuORF;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENSG00000138095|ENST00000260665|LRPPRC	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.3001708984375	2	565.30005	1128.58555	0.29008	0.00016398	-0.26984	-0.00015254	0.020237	1.144E-05	565.2998719015717	63.149	1.5997	63.149	62.689	64.288	0					135	58	4	0	0	0	9.2305E-05	2	15608	15608;15660		142.08	80.722	1	6377300			16948	4116	9573	9574	21405;21406	21405					0.026397977628448643
IYKPVTDFF	9	Unmodified	_IYKPVTDFF_					0	0	0		ENST00000472420.5_1_2:44123526-44126707:-|nuORF;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENSG00000138095|ENST00000260665|LRPPRC	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.3001708984375	2	565.30005	1128.58555	0.44642	0.00025236	-0.56068	-0.00031695	-0.11426	-6.4591E-05	565.2997615217294	63.032	1.6613	63.128	62.602	64.263	0.095722					148	59	5	0	0	0	1.2283E-05	1	15566	15566		155.03	93.669	1	7086500			16949	4116	9573	9574	21407	21407					0.026397977628448643
IYKPVTDFF	9	Unmodified	_IYKPVTDFF_					0	0	0		ENST00000472420.5_1_2:44123526-44126707:-|nuORF;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENSG00000138095|ENST00000260665|LRPPRC	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.3001708984375	2	565.30005	1128.58555	0.28675	0.0001621	-0.30557	-0.00017274	-0.01882	-1.0639E-05	565.2998481169794	63.155	1.664	63.147	62.597	64.261	-0.0085526					143	60	4	0	0	0	9.2305E-05	2	15608	15608;15657		142.08	80.722	1	7283700			16950	4116	9573	9574	21408;21409	21408					0.026397977628448643
IYKPVTDFFL	10	Unmodified	_IYKPVTDFFL_					0	0	0		ENST00000472420.5_1_2:44123526-44126707:-|nuORF;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENSG00000138095|ENST00000260665|LRPPRC	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.392333984375	2	621.842082	1241.66961	0.38603	0.00024005	-0.38146	-0.00023721	0.0045758	2.8454E-06	621.8424574124272	72.982	0.77815	72.982	72.639	73.417	0					57	27	4	0	0	0	0.26767	1	18630	18630		47.594	26.057	1	308240			16951	4116	9574	9575	21410	21410					0.05844328859757297
IYKPVTDFFL	10	Unmodified	_IYKPVTDFFL_					0	0	0		ENST00000472420.5_1_2:44123526-44126707:-|nuORF;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENSG00000138095|ENST00000260665|LRPPRC	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3922119140625	2	621.842082	1241.66961	0.060207	3.7439E-05	0.53318	0.00033156	0.59339	0.000369	621.8425076632394	72.902	0.62465	72.956	72.765	73.389	0.053841					46	22	3	0	0	0	0.2729	1	18603	18603		38.615	24.709	1	280700			16952	4116	9574	9575	21411	21411					0.05844328859757297
IYKPVTDFFL	10	Unmodified	_IYKPVTDFFL_					0	0	0		ENST00000472420.5_1_2:44123526-44126707:-|nuORF;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENSG00000138095|ENST00000260665|LRPPRC	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	ENST00000472420.5_1_2:44123526-44126707:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3921508789062	2	621.842082	1241.66961	0.33888	0.00021073	0.57322	0.00035645	0.91211	0.00056719	621.8424370427564	73.001	0.55158	72.971	72.793	73.345	-0.029305					39	19	3	0	0	0	0.25783	1	18629	18629		43.982	23.567	1	292310			16953	4116	9574	9575	21412	21412					0.05844328859757297
IYKQHAALA	9	Unmodified	_IYKQHAALA_					0	0	0		nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1;nc|ENSG00000099204|O14639-2|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.79034423828125	2	507.790184	1013.56581	0.58533	0.00029722	0.072078	3.66E-05	0.6574	0.00033382	507.790125059708	54.303	0.91781	54.303	53.946	54.864	0					92	33	3	0	0	0	0.079066	2	12906	12906;12957		42.095	11.458	1	2507900			16954	1477	9575	9576	21413;21414	21413					0.05957466542736256
IYKQHAALA	9	Unmodified	_IYKQHAALA_					0	0	0		nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1;nc|ENSG00000099204|O14639-2|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.79046630859375	2	507.790184	1013.56581	0.49056	0.0002491	0.118	5.9919E-05	0.60856	0.00030902	507.79018868133846	54.296	0.9038	54.359	53.93	54.834	0.063202					87	33	3	0	0	0	0.11517	2	12887	12887;12941		36.044	6.9626	1	2464600			16955	1477	9575	9576	21415;21416	21415					0.05957466542736256
IYKQHAALA	9	Unmodified	_IYKQHAALA_					0	0	0		nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1;nc|ENSG00000099204|O14639-2|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.790771484375	2	507.790184	1013.56581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.121	1	59.213	58.713	59.713	0.091301								0	0	0	0.19804	1	14370	14370		23.148	0.41214	1				16956	1477	9575	9576	21417	21417					0.05957466542736256
IYKQHAALA	9	Unmodified	_IYKQHAALA_					0	0	0		nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1;nc|ENSG00000099204|O14639-2|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.79034423828125	2	507.790184	1013.56581	0.50798	0.00025795	0.14405	7.3148E-05	0.65203	0.00033109	507.7901664188698	54.512	0.86675	54.496	54.057	54.924	-0.015923					58	30	2	0	0	0	0.10075	1	12977	12977		38.151	9.0696	1	2569700			16957	1477	9575	9576	21418	21418					0.05957466542736256
IYKREKLY	8	Unmodified	_IYKREKLY_					0	0	0		nc|ENSG00000189144|Q86YE8-2|ZNF573;nc|ENSG00000189144|Q86YE8-4|ZNF573;nc|ENSG00000189144|Q86YE8-3|ZNF573;ENSG00000189144|ENST00000536220|ZNF573	nc|ENSG00000189144|Q86YE8-2|ZNF573	nc|ENSG00000189144|Q86YE8-2|ZNF573	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2744750976562	2	556.826766	1111.63898	0.42713	0.00023784	-0.88115	-0.00049065	-0.45402	-0.00025281	556.826355050875	57.477	0.67671	57.477	56.876	57.552	0					28	24	2	0	0	0	0.34046	1	13774	13774		9.3474	0	1	143630			16958	7803	9576	9577	21419	21419					0.08762595265397977
IYKRVKGP	8	Unmodified	_IYKRVKGP_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.25244140625	2	480.803094	959.591636	-0.06894	-3.3147E-05	0.20567	9.8887E-05	0.13673	6.574E-05	480.8031432288159	27.641	0.090578	27.629	27.555	27.645	-0.01156					4	2	2	0	0	0	0.34319	1	4718	4718		5.7604	0	1	33918	+		16959	14737	9577	9578	21420	21420					0.11022360785045748
IYKSIMEQF	9	Oxidation (M)	_IYKSIM(Oxidation (M))EQF_		IYKSIM(1)EQF		IYKSIM(140)EQF	0	0	1		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.79443359375	2	587.794275	1173.574	0.29997	0.00017632	0.24246	0.00014252	0.54243	0.00031884	587.794411287286	43.931	0.75681	43.931	43.333	44.09	0					60	27	4	0	0	0	8.5298E-05	1	9686	9686		143.21	50.56	1	1288500			16960	3360	9578	9579	21421	21421		425			-0.005847673228117856
IYKSIMEQF	9	Oxidation (M)	_IYKSIM(Oxidation (M))EQF_		IYKSIM(1)EQF		IYKSIM(140)EQF	0	0	1		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.794677734375	2	587.794275	1173.574	0.41477	0.0002438	0.6083	0.00035755	1.0231	0.00060135	587.7946365631551	44.274	0.87054	44.274	44.065	44.935	0					62	31	3	0	0	0	0.00010651	2	9808	9808;9858		139.78	50.828	1	1534300			16961	3360	9578	9579	21422;21423	21422		425			-0.005847673228117856
IYKSIMEQF	9	Oxidation (M)	_IYKSIM(Oxidation (M))EQF_		IYKSIM(1)EQF		IYKSIM(150)EQF	0	0	1		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.794189453125	2	587.794275	1173.574	0.38478	0.00022617	0.28199	0.00016575	0.66677	0.00039192	587.7943995864968	43.61	0.46783	43.688	43.373	43.841	0.077518					48	16	4	0	0	0	1.3973E-05	1	9558	9558		154.75	62.099	1	1266500			16962	3360	9578	9579	21424	21424		425			-0.005847673228117856
IYKSIMEQF	9	Oxidation (M)	_IYKSIM(Oxidation (M))EQF_		IYKSIM(1)EQF		IYKSIM(130)EQF	0	0	1		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.7946166992188	2	587.794275	1173.574	0.34826	0.00020471	0.67998	0.00039969	1.0282	0.0006044	587.7946032607429	43.996	0.87455	44.074	43.816	44.691	0.077515					60	32	3	0	0	0	0.0008224	2	9699	9699;9771		125.04	32.384	1	1539800			16963	3360	9578	9579	21425;21426	21425		425			-0.005847673228117856
IYKSIMEQF	9	Oxidation (M)	_IYKSIM(Oxidation (M))EQF_		IYKSIM(1)EQF		IYKSIM(130)EQF	0	0	1		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.7946166992188	2	587.794275	1173.574	0.38015	0.00022345	0.56354	0.00033124	0.94368	0.00055469	587.7944535386599	43.904	1.5484	43.988	43.268	44.817	0.083996					98	56	4	0	0	0	0.00026652	3	9696	9550;9696;9755		132.13	59.468	1	1400700			16964	3360	9578	9579	21427;21428;21429	21428		425			-0.005847673228117856
IYKSPVCLME	10	Unmodified	_IYKSPVCLME_					0	0	0			REV__ENST00000415212.1_1_10:89578218-89578669:+|nuORF	REV__ENST00000415212.1_1_10:89578218-89578669:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.78759765625	2	591.798503	1181.58245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.439	1	62.536	62.036	63.036	0.096985								0	0	0	0.34454	1	15397	15397		17.113	0	1		+		16965	20806	9579	9580	21430	21430					-0.0010753667784229037
IYKTIAHFL	9	Unmodified	_IYKTIAHFL_					0	0	0		ENSG00000175105|ENST00000636215|ZNF654;ZNF654|p.N73Efs*5|1|0.06|ENSG00000175105|chr3:88139526-88139527|-/GAAC|frameshift_variant	ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.307373046875	2	553.32386	1104.63317	0.3997	0.00022116	-0.65374	-0.00036173	-0.25404	-0.00014057	553.3234932070108	49.831	0.29487	49.852	49.719	50.014	0.020695					18	10	2	0	0	0	0.22061	1	11462	11462		24.021	9.4389	1	211520			16966	6838	9580	9581	21431	21431					0.08503496753723994
IYKTIAHFL	9	Unmodified	_IYKTIAHFL_					0	0	0		ENSG00000175105|ENST00000636215|ZNF654;ZNF654|p.N73Efs*5|1|0.06|ENSG00000175105|chr3:88139526-88139527|-/GAAC|frameshift_variant	ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.32386	1104.63317	0.33612	0.00018599	0.008662	4.7929E-06	0.34479	0.00019078	553.3238277353585	49.874	0.27568	49.874	49.701	49.976	0	0.015031	0.00011989	NaN	18.146	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191200			16967	6838	9580	9581							0.08503496753723994
IYKTIAHFL	9	Unmodified	_IYKTIAHFL_					0	0	0		ENSG00000175105|ENST00000636215|ZNF654;ZNF654|p.N73Efs*5|1|0.06|ENSG00000175105|chr3:88139526-88139527|-/GAAC|frameshift_variant	ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.32386	1104.63317	0.40606	0.00022468	-0.093828	-5.1917E-05	0.31223	0.00017277	553.3238374503575	49.805	0.31261	49.85	49.695	50.007	0.044888	-0.0085953	6.4685E-06	NaN	18.146	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182470			16968	6838	9580	9581							0.08503496753723994
IYKTSILVF	9	Unmodified	_IYKTSILVF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;ENST00000264874.7_1_6:7397003-7402949:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.326171875	2	542.326068	1082.63758	0.71713	0.00038892	-0.25777	-0.0001398	0.45936	0.00024912	542.3257884710644	64.249	0.96701	64.249	63.967	64.934	0					91	35	4	0	0	0	0.020233	1	15999	15999		63.961	17.94	1	1714500			16969	3181	9581	9582	21432	21432					0.09956961176635559
IYKTSILVF	9	Unmodified	_IYKTSILVF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;ENST00000264874.7_1_6:7397003-7402949:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.326171875	2	542.326068	1082.63758	0.78128	0.00042371	-0.31849	-0.00017272	0.4628	0.00025099	542.325719390561	64.277	0.96175	64.268	63.962	64.924	-0.0095291					93	34	4	0	0	0	0.0079761	1	15982	15982		82.529	27.756	1	1561400			16970	3181	9581	9582	21433	21433					0.09956961176635559
IYKTSILVF	9	Unmodified	_IYKTSILVF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;ENST00000264874.7_1_6:7397003-7402949:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	542.326068	1082.63758	0.68559	0.00037181	-0.19551	-0.00010603	0.49008	0.00026578	542.3258125090011	64.166	0.86386	64.259	63.958	64.822	0.09288	0.00015511	7.1568E-05	NaN	82.529	87	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1538900			16971	3181	9581	9582							0.09956961176635559
IYKVLDFLL	9	Unmodified	_IYKVLDFLL_					0	0	0			REV__ENST00000436210.1_1_22:36293530-36293989:-|nuORF	REV__ENST00000436210.1_1_22:36293530-36293989:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3435668945312	2	562.341718	1122.66888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.622	1	77.622	77.122	78.122	0								0	0	0	0.24311	1	20044	20044		8.5933	3.3626	1		+		16972	21003	9582	9583	21434	21434					0.11245534210706865
IYKYISIF	8	Unmodified	_IYKYISIF_					0	0	0		ENST00000480440.5_1_1:86847891-86851212:-|nuORF	ENST00000480440.5_1_1:86847891-86851212:-|nuORF	ENST00000480440.5_1_1:86847891-86851212:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.7523803710938	2	523.799686	1045.58482	0.73626	0.00038565	-3.7791	-0.0019795	-3.0429	-0.0015939	523.7981055444317	47.511	0.16609	47.511	47.468	47.634	0					6	5	2	0	0	0	0.33245	1	10784	10784		13.508	0	1	106950			16973	11009	9583	9584	21435	21435					0.06385003113814491
IYLANINNF	9	Unmodified	_IYLANINNF_					0	0	0		ENST00000471256.1_1:206619445-206629134:+|nuORF	ENST00000471256.1_1:206619445-206629134:+|nuORF	ENST00000471256.1_1:206619445-206629134:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7720947265625	2	541.287474	1080.5604	0.53452	0.00028933	-0.56828	-0.0003076	-0.033764	-1.8276E-05	541.286842845214	71.673	0.30516	71.673	71.55	71.855	0					18	10	2	0	0	0	0.10135	1	18266	18266		52.268	26.869	1	150290			16974	10874	9584	9585	21436	21436					0.023337429602634074
IYLANINNF	9	Unmodified	_IYLANINNF_					0	0	0		ENST00000471256.1_1:206619445-206629134:+|nuORF	ENST00000471256.1_1:206619445-206629134:+|nuORF	ENST00000471256.1_1:206619445-206629134:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7720336914062	2	541.287474	1080.5604	0.5282	0.00028591	-0.47923	-0.0002594	0.048964	2.6504E-05	541.2866053868714	71.664	0.43196	71.72	71.601	72.033	0.056572					29	15	3	0	0	0	0.12743	1	18248	18248		46.021	19.137	1	148220			16975	10874	9584	9585	21437	21437					0.023337429602634074
IYLANINNF	9	Unmodified	_IYLANINNF_					0	0	0		ENST00000471256.1_1:206619445-206629134:+|nuORF	ENST00000471256.1_1:206619445-206629134:+|nuORF	ENST00000471256.1_1:206619445-206629134:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7720336914062	2	541.287474	1080.5604	0.64854	0.00035105	0.02472	1.3381E-05	0.67326	0.00036443	541.2872143073037	71.764	0.29816	71.737	71.602	71.901	-0.027275					22	10	3	0	0	0	0.081926	1	18268	18268		57.471	35.725	1	131750			16976	10874	9584	9585	21438	21438					0.023337429602634074
IYLAREPQI	9	Unmodified	_IYLAREPQI_					0	0	0			REV__nc|ENSG00000185989|Q14644-2|RASA3	REV__nc|ENSG00000185989|Q14644-2|RASA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3164672851562	2	551.816399	1101.61824	0.42737	0.00023583	2.819	0.0015556	3.2463	0.0017914	551.8162788401265	53.235	0.87845	53.225	52.837	53.715	-0.0096054					93	32	5	0	0	0	0.23007	1	12545	12545		19.257	3.1079	1	2435000	+		16977	18428	9585	9586	21439	21439					0.07150004885693306
IYLATANVPN	10	Unmodified	_IYLATANVPN_					0	0	0			REV__ENSG00000174579|ENST00000309993|MSL2	REV__ENSG00000174579|ENST00000309993|MSL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7182006835938	2	538.292756	1074.57096	-0.60073	-0.00032337	3.7004	0.0019919	3.0997	0.0016685	538.7944874028153	35.005	0.14098	35.083	34.975	35.116	0.077377					5	4	2	0	0	0	0.31691	1	6966	6966		9.3831	4.1525	1	50082	+		16978	17842	9586	9587	21440	21440					0.036657256147236694
IYLATSSSKF	10	Unmodified	_IYLATSSSKF_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.29150390625	2	558.800414	1115.58628	-0.08451	-4.7224E-05	1.673	0.00093487	1.5885	0.00088764	559.3031304769273	61.819	0.36118	61.916	61.759	62.12	0.096985					32	12	4	0	0	0	0.33268	1	15207	15207		15.847	0.078963	1	241890			16979	982	9587	9588	21441	21441					0.03310592411912694
IYLDDLPSL	9	Unmodified	_IYLDDLPSL_					0	0	0		ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7818603515625	2	524.78169	1047.54883	0.48642	0.00025526	-0.2405	-0.00012621	0.24591	0.00012905	524.7815299461877	81.594	0.772	81.594	81.338	82.11	0					66	31	3	0	0	0	0.0001234	1	21295	21295		141.83	56.47	1	572880			16980	3665	9588	9589	21442	21442					0.02695501146308743
IYLDDLPSL	9	Unmodified	_IYLDDLPSL_					0	0	0		ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7817993164062	2	524.78169	1047.54883	0.19682	0.00010329	0.10615	5.5705E-05	0.30297	0.00015899	524.7816913678827	81.548	0.75963	81.617	81.309	82.069	0.068993					78	34	3	0	0	0	5.2996E-06	1	21262	21262		156.16	78.172	1	674090			16981	3665	9588	9589	21443	21443					0.02695501146308743
IYLDDLPSL	9	Unmodified	_IYLDDLPSL_					0	0	0		ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.78169	1047.54883	0.5153	0.00027042	-0.25862	-0.00013572	0.25668	0.0001347	524.7815429728789	81.65	0.66277	81.625	81.395	82.058	-0.02404	0.013339	-0.00013618	NaN	156.16	66	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	637910			16982	3665	9588	9589							0.02695501146308743
IYLDELQVI	9	Unmodified	_IYLDELQVI_					0	0	0		ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF;ENST00000473034.5_1_2:219533245-219536693:-|nuORF	ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3109130859375	2	553.310615	1104.60668	0.52721	0.00029171	-0.046573	-2.5769E-05	0.48063	0.00026594	553.3104846352513	82.726	1.4488	82.726	82.436	83.885	0					141	54	4	0	0	0	0.0019475	9	21606	21577;21606;21663;21670;21720;21773;21824;21872;21919		110.67	66.816	1	1887900			16983	5686	9589	9590	21444;21445;21446;21447;21448;21449;21450;21451;21452	21445					0.05855763071713227
IYLDELQVI	9	Unmodified	_IYLDELQVI_					0	0	0		ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF;ENST00000473034.5_1_2:219533245-219536693:-|nuORF	ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3108520507812	2	553.310615	1104.60668	0.45879	0.00025385	-0.03339	-1.8475E-05	0.4254	0.00023538	553.3105263531787	82.635	1.4435	82.708	82.378	83.822	0.073097					138	56	4	0	0	0	0.003317	8	21547	21515;21547;21603;21640;21688;21735;21784;21834		99.755	55.897	1	2070600			16984	5686	9589	9590	21453;21454;21455;21456;21457;21458;21459;21460	21454					0.05855763071713227
IYLDELQVI	9	Unmodified	_IYLDELQVI_					0	0	0		ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF;ENST00000473034.5_1_2:219533245-219536693:-|nuORF	ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.830078125	2	553.310615	1104.60668	0.45825	0.00025355	0.0017242	9.5403E-07	0.45997	0.00025451	553.3105257703046	82.773	1.3825	82.752	82.45	83.833	-0.020584					139	56	4	0	0	0	0.012386	7	21574	21574;21663;21709;21755;21805;21847;21894		75.761	43.455	1	2036000			16985	5686	9589	9590	21461;21462;21463;21464;21465;21466;21467	21461					0.05855763071713227
IYLDGIITI	9	Unmodified	_IYLDGIITI_					0	0	0		ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000147996|ENST00000382405|ZNG1E;ENSG00000136682|ENST00000259199|ZNG1B	ENST00000431099.3_1_9:160122-173274:-|nuORF	ENST00000431099.3_1_9:160122-173274:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2896423339844	2	510.802426	1019.5903	0.47151	0.00024085	-0.59746	-0.00030518	-0.12595	-6.4334E-05	510.80222925859226	88.081	0.63293	88.081	87.87	88.503	0					40	32	2	0	0	0	0.10197	1	23249	23249		37.974	7.3375	1	372080			16986	3988	9590	9591	21468	21468					0.08128681905623125
IYLDIFYII	9	Unmodified	_IYLDIFYII_					0	0	0		ENSG00000282608|ENST00000241356|ADORA3	ENSG00000282608|ENST00000241356|ADORA3	ENSG00000282608|ENST00000241356|ADORA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8350219726562	2	586.833726	1171.6529	0.57207	0.00033571	0.99633	0.00058468	1.5684	0.00092039	586.8339873867267	85.264	0.58942	85.251	84.941	85.531	-0.01284					41	23	3	0	0	0	0.32415	1	22449	22449		5.2307	0	1	189280			16987	8756	9591	9592	21469	21469					0.07393827973828593
IYLDIFYII	9	Unmodified	_IYLDIFYII_					0	0	0		ENSG00000282608|ENST00000241356|ADORA3	ENSG00000282608|ENST00000241356|ADORA3	ENSG00000282608|ENST00000241356|ADORA3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	586.833726	1171.6529	0.55644	0.00032654	0.7481	0.00043901	1.3045	0.00076555	586.8338966190582	85.262	0.68922	85.262	84.92	85.609	0	0.021194	-0.00026426	NaN	5.2307	47	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195040			16988	8756	9591	9592							0.07393827973828593
IYLDIFYII	9	Unmodified	_IYLDIFYII_					0	0	0		ENSG00000282608|ENST00000241356|ADORA3	ENSG00000282608|ENST00000241356|ADORA3	ENSG00000282608|ENST00000241356|ADORA3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	586.833726	1171.6529	0.48492	0.00028457	1.2095	0.00070978	1.6944	0.00099435	586.8341508963268	85.129	0.67645	85.209	84.912	85.589	0.080887	-0.031553	0.00027728	NaN	5.2307	40	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241560			16989	8756	9591	9592							0.07393827973828593
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7958374023438	2	561.795132	1121.57571	0.46061	0.00025877	0.0069979	3.9314E-06	0.46761	0.0002627	561.7951167564293	86.762	1.4562	86.762	86.354	87.81	0					173	63	5	0	0	0	0.30623	1	23103	23103		7.9102	1.187	1	4967300			16990	468	9592	9593	21470	21470					0.019786097574751693
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7808227539062	2	561.795132	1121.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.735	1	83.735	83.235	84.235	0								0	0	0	0.21357	1	21918	21918		18.135	6.4947	1				16991	468	9592	9593	21471	21471					0.019786097574751693
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2796020507812	2	561.795132	1121.57571	0.37639	0.00021145	0.55116	0.00030964	0.92755	0.00052109	561.7954656326173	89.42	0.71985	89.42	89.111	89.831	0					61	43	2	0	0	0	0.25202	1	23635	23635		10.824	3.5347	1	57713			16992	468	9592	9593	21472	21472					0.019786097574751693
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7955322265625	2	561.795132	1121.57571	0.26248	0.00014746	1.6308	0.00091616	1.8933	0.0010636	561.7956619545413	80.279	2.4443	80.279	79.666	82.11	0					198	101	5	0	0	0	0.082808	1	20883	20883		49.933	25.259	1	7513500			16993	468	9592	9593	21473	21473					0.019786097574751693
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7950439453125	2	561.795132	1121.57571	0.5781	0.00032477	-0.96563	-0.00054248	-0.38753	-0.00021771	561.7944628763335	84.27	0.72971	84.347	84.097	84.827	0.077095					39	28	2	0	0	0	0.23775	1	22085	22085		18.135	9.3896	1	152710			16994	468	9592	9593	21474	21474					0.019786097574751693
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7953491210938	2	561.795132	1121.57571	0.41783	0.00023473	0.0065877	3.7009E-06	0.42441	0.00023843	561.7951157610962	86.611	2.1193	86.695	86.369	88.489	0.084251					204	100	5	0	0	0	0.28674	1	23029	23029		10.824	3.5347	1	5439400			16995	468	9592	9593	21475	21475					0.019786097574751693
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.343505859375	2	561.795132	1121.57571	0.34909	0.00019612	0.17868	0.00010038	0.52777	0.0002965	561.7947576772025	82.325	0.54732	82.398	82.158	82.705	0.073097					33	21	2	0	0	0	0.23783	1	21420	21420		12.532	1.7076	1	96810			16996	468	9592	9593	21476	21476					0.019786097574751693
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2797241210938	2	561.795132	1121.57571	0.43244	0.00024295	-0.11379	-6.3928E-05	0.31865	0.00017902	562.2969117121387	89.177	0.13466	89.268	89.187	89.322	0.090561					10	6	2	0	0	0	0.24913	1	23588	23588		12.532	2.3482	1	51227			16997	468	9592	9593	21477	21477					0.019786097574751693
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7955932617188	2	561.795132	1121.57571	0.40347	0.00022667	0.034073	1.9142E-05	0.43754	0.00024581	561.7951199755516	86.731	1.8309	86.725	86.342	88.173	-0.0056229					207	85	6	0	0	0	0.23775	1	22953	22953		18.135	2.2878	1	4990200			16998	468	9592	9593	21478	21478					0.019786097574751693
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7816772460938	2	561.795132	1121.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.903	1	83.887	83.387	84.387	-0.016823								0	0	0	0.23091	1	21957	21957		12.532	2.4576	1				16999	468	9592	9593	21479	21479					0.019786097574751693
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3427124023438	2	561.795132	1121.57571	0.26475	0.00014874	1.7468	0.00098132	2.0115	0.0011301	561.7956409218597	80.339	2.4606	80.312	79.646	82.107	-0.026817					236	97	6	0	0	0	0.10135	1	20867	20867		43.858	13.222	1	7978100			17000	468	9592	9593	21480	21480					0.019786097574751693
IYLDLPQNF	9	Unmodified	_IYLDLPQNF_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;ENST00000502341.5_1_5:141348723-141357950:+|nuORF	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	561.795132	1121.57571	0.52584	0.00029542	-0.28554	-0.00016041	0.2403	0.000135	561.7947692190771	84.302	0.76128	84.302	84.109	84.871	0	-0.0057017	0.00037977	NaN	18.135	38	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128250			17001	468	9592	9593							0.019786097574751693
IYLEKLKTI	9	Unmodified	_IYLEKLKTI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8529052734375	2	560.85245	1119.69035	0.60704	0.00034046	0.099315	5.5701E-05	0.70635	0.00039616	560.8523653928788	46.96	0.9848	46.96	46.76	47.745	0					66	34	3	0	0	0	0.0013864	1	10609	10609		117.84	62.335	1	2151000			17002	12859	9593	9594	21481	21481					0.13528919239411152
IYLEKLKTI	9	Unmodified	_IYLEKLKTI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8528442382812	2	560.85245	1119.69035	0.43022	0.00024129	0.25206	0.00014137	0.68227	0.00038266	560.8524326144416	46.871	1.0457	46.923	46.655	47.7	0.052574					84	38	4	0	0	0	0.0013864	1	10572	10572		117.84	62.335	1	2096000			17003	12859	9593	9594	21482	21482					0.13528919239411152
IYLEKLKTI	9	Unmodified	_IYLEKLKTI_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8525390625	2	560.85245	1119.69035	0.66018	0.00037026	-0.040741	-2.285E-05	0.61944	0.00034741	560.8523264650063	46.913	0.88923	46.967	46.709	47.598	0.054371					69	31	3	0	0	0	0.0013864	2	10621	10570;10621		117.84	62.335	1	2033800			17004	12859	9593	9594	21483;21484	21484					0.13528919239411152
IYLEKPVTV	9	Unmodified	_IYLEKPVTV_					0	0	0			REV__nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	REV__nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8167114257812	2	531.3157	1060.61685	0.37155	0.00019741	-0.11343	-6.0267E-05	0.25812	0.00013714	531.8167570909048	91.96	0.87518	92.051	91.705	92.581	0.090668					73	57	2	0	0	0	0.31038	1	24446	24446		7.2892	0.56607	1	132100	+		17005	18753	9594	9595	21485	21485					0.08896370796924202
IYLEKPVTV	9	Unmodified	_IYLEKPVTV_					0	0	0			REV__nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	REV__nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.3157	1060.61685	0.45548	0.000242	-0.42299	-0.00022474	0.032482	1.7258E-05	531.3158722784028	91.829	0.89455	91.829	91.644	92.538	0	-0.11075	-0.00014847	NaN	7.2892	90	63	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106790	+		17006	18753	9594	9595							0.08896370796924202
IYLEKPVTV	9	Unmodified	_IYLEKPVTV_					0	0	0			REV__nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	REV__nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	531.3157	1060.61685	0.37155	0.00019741	-0.11343	-6.0267E-05	0.25812	0.00013714	531.8167570909048	91.96	0.87518	92.051	91.705	92.581	0.090668	0.11075	0.00018049	NaN	7.2892	73	57	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132100	+		17007	18753	9594	9595							0.08896370796924202
IYLEVIHNL	9	Unmodified	_IYLEVIHNL_					0	0	0		nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000491074.5_1_2:183605037-183619453:+|nuORF;ENST00000418559.5_1_2:183605037-183617329:+|nuORF	nc|ENSG00000077232|Q8IXB1-2|DNAJC10	nc|ENSG00000077232|Q8IXB1-2|DNAJC10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2939453125	2	557.318774	1112.623	0.53923	0.00030052	1.5637	0.00087145	2.1029	0.001172	557.3195452332162	66.115	0.44534	66.115	65.871	66.317	0					33	15	3	0	0	0	0.11234	1	16492	16492		43.772	13.136	1	480000			17008	1081	9595	9596	21486	21486					0.07118889028447484
IYLEVIHNL	9	Unmodified	_IYLEVIHNL_					0	0	0		nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000491074.5_1_2:183605037-183619453:+|nuORF;ENST00000418559.5_1_2:183605037-183617329:+|nuORF	nc|ENSG00000077232|Q8IXB1-2|DNAJC10	nc|ENSG00000077232|Q8IXB1-2|DNAJC10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	557.318774	1112.623	0.60234	0.0003357	1.2496	0.00069642	1.8519	0.0010321	557.319348304127	65.946	0.35789	66.035	65.839	66.197	0.088882	-0.04018	-0.00011245	NaN	43.772	32	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395450			17009	1081	9595	9596							0.07118889028447484
IYLFDHTIE	9	Unmodified	_IYLFDHTIE_					0	0	0			REV__nc|ENSG00000165219|Q14C86-6|GAPVD1	REV__nc|ENSG00000165219|Q14C86-6|GAPVD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.79443359375	2	575.792589	1149.57063	0.029083	1.6746E-05	1.4477	0.00083355	1.4767	0.00085029	575.7943711579103	95.239	1.5202	95.239	94.376	95.896	0					419	144	4	0	0	0	0.155	1	25320	25320		30.225	5.5509	1	874170	+		17010	23070	9596	9597	21487	21487					0.0018230589482755022
IYLFKPFFA	9	Unmodified	_IYLFKPFFA_					0	0	0		ENST00000262815.12_2_19:19468297-19468426:+|nuORF	ENST00000262815.12_2_19:19468297-19468426:+|nuORF	ENST00000262815.12_2_19:19468297-19468426:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.3242797851562	2	573.323328	1144.6321	0.19018	0.00010903	0.60723	0.00034814	0.79741	0.00045717	573.3242715626437	101.23	1.9357	101.23	100.51	102.45	-0.0054703					557	273	3	0	0	0	0.32415	1	27060	27060		5.2307	2.3415	1	615640			17011	8991	9597	9598	21488	21488					0.0655728238480151
IYLFTAVTLS	10	Unmodified	_IYLFTAVTLS_					0	0	0		ENST00000497660.5_1_1:8390216-8404070:+|nuORF;ENSG00000162426|ENST00000471889|SLC45A1	ENST00000497660.5_1_1:8390216-8404070:+|nuORF	ENST00000497660.5_1_1:8390216-8404070:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3212280273438	2	564.320983	1126.62741	0.20819	0.00011748	-0.1516	-8.5549E-05	0.056591	3.1936E-05	564.3208244893409	62.092	0.98461	62.189	61.729	62.713	0.096985					72	35	3	0	0	0	0.069364	1	15251	15251		54.774	1.3695	1	905020			17012	5570	9598	9599	21489	21489					0.06916353451356372
IYLHADLFL	9	Unmodified	_IYLHADLFL_					0	0	0			REV__ENST00000410107.5_1_6:10627023-10627191:+|nuORF	REV__ENST00000410107.5_1_6:10627023-10627191:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.8370971679688	2	552.808042	1103.60153	0.51699	0.00028579	-0.47509	-0.00026264	0.041892	2.3158E-05	552.8078178978861	72.076	0.61864	72.132	71.868	72.486	0.056572					47	22	3	0	0	0	0.21137	1	18423	18423		24.674	6.5389	1	444390	+		17013	20771	9599	9600	21490	21490					0.05387503999736509
IYLHEAKL	8	Unmodified	_IYLHEAKL_					0	0	0			REV__ENST00000467269.5_1_19:54867963-54872541:-|nuORF	REV__ENST00000467269.5_1_19:54867963-54872541:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7873229980469	2	493.78711	985.559667	0.695	0.00034318	-0.15768	-7.7861E-05	0.53732	0.00026532	493.7869858477701	50.936	1.5886	50.936	49.976	51.565	0					136	58	3	0	0	0	0.32038	1	11666	11666		28.487	3.0875	1	1328400	+		17014	17395	9600	9601	21491	21491					0.06630948311226348
IYLHEAKL	8	Unmodified	_IYLHEAKL_					0	0	0			REV__ENST00000467269.5_1_19:54867963-54872541:-|nuORF	REV__ENST00000467269.5_1_19:54867963-54872541:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7873840332031	2	493.78711	985.559667	0.75256	0.00037161	-0.28074	-0.00013863	0.47182	0.00023298	493.78697927714376	50.927	1.6883	50.973	49.933	51.621	0.046574					136	62	3	0	0	0	0.32038	1	11733	11733		28.487	0.85804	1	1432900	+		17015	17395	9600	9601	21492	21492					0.06630948311226348
IYLIHWRVL	9	Unmodified	_IYLIHWRVL_					0	0	0		ENSG00000283288|ENST00000637503|SMIM33	ENSG00000283288|ENST00000637503|SMIM33	ENSG00000283288|ENST00000637503|SMIM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.91558837890625	3	404.913243	1211.7179	-0.1474	-5.9684E-05	2.7853	0.0011278	2.6379	0.0010681	404.9155179217999	16.905	2.0566	16.905	16.242	18.299	0					252	71	5	0	0	0	0.20626	2	1499	1447;1499		22.736	2.3217	1	1214500			17016	8757	9601	9602	21493;21494	21494					0.12050867290304268
IYLIHWRVL	9	Unmodified	_IYLIHWRVL_					0	0	0		ENSG00000283288|ENST00000637503|SMIM33	ENSG00000283288|ENST00000637503|SMIM33	ENSG00000283288|ENST00000637503|SMIM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.9156494140625	3	404.913243	1211.7179	-0.32349	-0.00013099	2.8973	0.0011732	2.5738	0.0010422	404.9156043489178	17.045	2.2834	16.928	16.272	18.556	-0.11739					237	80	4	0	0	0	0.13748	5	1540	1492;1540;1583;1613;1668		32.786	6.092	1	1148700			17017	8757	9601	9602	21495;21496;21497;21498;21499	21496					0.12050867290304268
IYLIHWRVL	9	Unmodified	_IYLIHWRVL_					0	0	0		ENSG00000283288|ENST00000637503|SMIM33	ENSG00000283288|ENST00000637503|SMIM33	ENSG00000283288|ENST00000637503|SMIM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.91552734375	3	404.913243	1211.7179	-0.062959	-2.5493E-05	2.7023	0.0010942	2.6393	0.0010687	404.91564620819906	16.984	2.2186	16.924	16.237	18.456	-0.060429					254	78	4	0	0	0	0.17277	3	1464	1464;1511;1569		27.629	6.0918	1	1262300			17018	8757	9601	9602	21500;21501;21502	21500					0.12050867290304268
IYLILMCTIF	10	Unmodified	_IYLILMCTIF_					0	0	0			REV__ENST00000527449.1_1_14:73574437-73577964:+|nuORF	REV__ENST00000527449.1_1_14:73574437-73577964:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.56036376953125	3	410.560601	1228.65997	0.15454	6.3448E-05	-0.023573	-9.6783E-06	0.13097	5.377E-05	410.5605898362784	53.657	1.2162	53.657	53.386	54.602	0					124	44	4	0	0	0	0.29048	1	12652	12652		21.59	21.59	1	6005700	+		17019	21976	9602	9603	21503	21503					0.054791012583564225
IYLILMCTIF	10	Unmodified	_IYLILMCTIF_					0	0	0			REV__ENST00000527449.1_1_14:73574437-73577964:+|nuORF	REV__ENST00000527449.1_1_14:73574437-73577964:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.5605773925781	3	410.560601	1228.65997	0.2611	0.0001072	-0.040211	-1.6509E-05	0.22089	9.0689E-05	410.56057494599406	54.047	1.2153	54.031	53.709	54.924	-0.015923					130	43	4	0	0	0	0.324	2	12750	12750;12844		17.443	16.566	1	6453300	+		17020	21976	9602	9603	21504;21505	21504					0.054791012583564225
IYLKQRLRH	9	Unmodified	_IYLKQRLRH_					0	0	0		nc|ENSG00000169247|Q8TF17-5|SH3TC2;ENSG00000169247|ENST00000515425|SH3TC2;nc|ENSG00000169247|Q8TF17-4|SH3TC2;ENST00000504517.5_1_5:148386573-148411207:-|nuORF;ENST00000510779.1_1_5:148384276-148408226:-|nuORF	nc|ENSG00000169247|Q8TF17-5|SH3TC2	nc|ENSG00000169247|Q8TF17-5|SH3TC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5867004394531	3	409.58753	1225.74076	-0.4737	-0.00019402	-0.57404	-0.00023512	-1.0477	-0.00042914	409.58730784704863	34.491	1.0028	34.569	34.164	35.167	0.077377					88	35	4	0	0	0	0.32371	1	6875	6875		5.2969	1.7098	1	689620			17021	6342	9603	9604	21506	21506					0.13691886407764287
IYLKTTLGLKT	11	Unmodified	_IYLKTTLGLKT_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.2471008300781	3	417.595468	1249.76457	0.12785	5.339E-05	-1.8483	-0.00077184	-1.7205	-0.00071845	417.5946396384473	28.861	0.54482	28.857	28.599	29.144	-0.0042572					33	18	3	0	0	0	0.33236	1	5015	5015		2.4348	0	1	190470	+		17022	18755	9604	9605	21507	21507					0.1496826233092179
IYLLIHNNF	9	Unmodified	_IYLLIHNNF_					0	0	0		ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.8189086914062	2	573.818941	1145.62333	0.40602	0.00023298	-0.48565	-0.00027868	-0.07963	-4.5693E-05	573.8187839634127	64.521	2.7199	64.521	64.105	66.825	0					250	96	6	0	0	0	1.6676E-16	6	15997	15997;16046;16087;16139;16153;16203		207.55	132.62	1	15465000			17023	4479	9605	9606	21508;21509;21510;21511;21512;21513	21508					0.05634308748312833
IYLLIHNNF	9	Unmodified	_IYLLIHNNF_					0	0	0		ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8191528320312	2	573.818941	1145.62333	0.48554	0.00027861	-0.5707	-0.00032748	-0.085164	-4.8869E-05	573.8187553262385	64.409	2.1654	64.502	64.17	66.336	0.09288					240	79	6	0	0	0	1.021E-23	3	16006	15963;16006;16055		230.2	148.31	1	14816000			17024	4479	9605	9606	21514;21515;21516	21515					0.05634308748312833
IYLLIHNNF	9	Unmodified	_IYLLIHNNF_					0	0	0		ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.801025390625	2	573.818941	1145.62333	0.4174	0.00023951	-0.69499	-0.0003988	-0.27759	-0.00015929	573.818179746528	66.36	1.158	66.444	65.916	67.074	0.083832					70	41	3	0	0	0	0.044071	1	16615	16615		70.716	45.316	1	266760			17025	4479	9605	9606	21517	21517					0.05634308748312833
IYLLIHNNF	9	Unmodified	_IYLLIHNNF_					0	0	0		ENST00000471220.5_1_1:111415857-111435203:+|nuORF;ENST00000476408.1_1_1:111422872-111441814:+|nuORF;ENSG00000143119|ENST00000271324|CD53	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	ENST00000471220.5_1_1:111415857-111435203:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.8189697265625	2	573.818941	1145.62333	0.37221	0.00021358	-0.42969	-0.00024656	-0.057475	-3.298E-05	573.8187622636879	64.515	2.8874	64.506	64.128	67.016	-0.0095367					281	105	6	0	0	0	1.6676E-16	3	15993	15993;16041;16092		207.55	132.62	1	13094000			17026	4479	9605	9606	21518;21519;21520	21518					0.05634308748312833
IYLLRSQA	8	Unmodified	_IYLLRSQA_					0	0	0		nc|ENSG00000186684|Q4G0S4-1|CYP27C1;ENSG00000186684|ENST00000664447|CYP27C1;nc|ENSG00000186684|Q4G0S4|CYP27C1	nc|ENSG00000186684|Q4G0S4-1|CYP27C1	nc|ENSG00000186684|Q4G0S4-1|CYP27C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7618408203125	2	482.284734	962.554916	-0.086177	-4.1562E-05	-2.3262	-0.0011219	-2.4124	-0.0011634	482.2836888055774	13.058	0.36847	12.959	12.729	13.097	-0.09929					15	12	2	0	0	0	0.34247	1	300	300		8.5933	1.304	1	24673			17027	7638	9606	9607	21521	21521					0.07214064168465484
IYLNAGPMLF	10	Oxidation (M)	_IYLNAGPM(Oxidation (M))LF_		IYLNAGPM(1)LF		IYLNAGPM(97)LF	0	0	1		nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;ENST00000465643.1_1_7:40132349-40134576:+|nuORF	nc|ENSG00000065883|Q14004-2|CDK13	nc|ENSG00000065883|Q14004-2|CDK13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.7994384765625	2	577.79936	1153.58417	0.61647	0.0003562	-1.0861	-0.00062756	-0.46965	-0.00027136	577.7990514238071	78.392	1.1985	78.392	78.062	79.261	0					120	47	5	0	0	0	0.0040706	2	20315	20271;20315		97.075	57.117	1	2015800			17028	827	9607	9608	21522;21523	21523		104			0.013518404024353003
IYLNAGPMLF	10	Oxidation (M)	_IYLNAGPM(Oxidation (M))LF_		IYLNAGPM(1)LF		IYLNAGPM(85)LF	0	0	1		nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;ENST00000465643.1_1_7:40132349-40134576:+|nuORF	nc|ENSG00000065883|Q14004-2|CDK13	nc|ENSG00000065883|Q14004-2|CDK13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.799560546875	2	577.79936	1153.58417	0.59296	0.00034261	-1.0815	-0.00062486	-0.48849	-0.00028225	577.7990838928102	78.342	1.2316	78.4	78.058	79.289	0.058151					136	49	5	0	0	0	0.0074981	2	20309	20243;20309		85.357	45.399	1	2014100			17029	827	9607	9608	21524;21525	21525		104			0.013518404024353003
IYLNAGPMLF	10	Oxidation (M)	_IYLNAGPM(Oxidation (M))LF_		IYLNAGPM(1)LF		IYLNAGPM(85)LF	0	0	1		nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;ENST00000465643.1_1_7:40132349-40134576:+|nuORF	nc|ENSG00000065883|Q14004-2|CDK13	nc|ENSG00000065883|Q14004-2|CDK13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.7994995117188	2	577.79936	1153.58417	0.70739	0.00040873	-1.2054	-0.00069649	-0.49803	-0.00028776	577.7990561484198	78.384	1.2853	78.354	78.062	79.347	-0.030434					130	51	5	0	0	0	0.0074981	2	20330	20274;20330		85.357	45.399	1	1725800			17030	827	9607	9608	21526;21527	21527		104			0.013518404024353003
IYLNITNTL	9	Unmodified	_IYLNITNTL_					0	0	0		ENST00000420833.5_1_7:12258097-12270062:+|nuORF;ENSG00000106460|ENST00000396668|TMEM106B	ENST00000420833.5_1_7:12258097-12270062:+|nuORF	ENST00000420833.5_1_7:12258097-12270062:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.8126220703125	2	532.802957	1063.59136	0.47312	0.00025208	-1.5162	-0.00080783	-1.0431	-0.00055575	532.8020014103981	74.115	0.39857	74.115	73.944	74.343	0					18	12	2	0	0	0	0.0016712	3	18973	18973;18982;18997		114.2	32.311	1	590130			17031	2079	9608	9609	21528;21529;21530	21528					0.062108962745242025
IYLNITNTL	9	Unmodified	_IYLNITNTL_					0	0	0		ENST00000420833.5_1_7:12258097-12270062:+|nuORF;ENSG00000106460|ENST00000396668|TMEM106B	ENST00000420833.5_1_7:12258097-12270062:+|nuORF	ENST00000420833.5_1_7:12258097-12270062:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.8029174804688	2	532.802957	1063.59136	0.28659	0.00015269	-1.4828	-0.00079004	-1.1962	-0.00063735	532.8017369129349	74.096	0.29103	74.148	73.977	74.268	0.052368					14	9	2	0	0	0	0.00010125	3	18955	18924;18955;18970		140.63	51.232	1	460860			17032	2079	9608	9609	21531;21532;21533	21532					0.062108962745242025
IYLNNIIPRF	10	Unmodified	_IYLNNIIPRF_					0	0	0		ENSG00000266028|ENST00000573034|SRGAP2;nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C	ENSG00000266028|ENST00000573034|SRGAP2	ENSG00000266028|ENST00000573034|SRGAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.8671264648438	2	631.866423	1261.71829	0.429	0.00027107	-0.16755	-0.00010587	0.26146	0.00016521	631.8663919176481	76.215	0.63556	76.183	75.931	76.567	-0.031479					26	22	2	0	0	0	0.045157	1	19630	19630		60.074	45.236	1	229730			17033	8674	9609	9610	21534	21534					0.09790242219492029
IYLNNIIPRF	10	Unmodified	_IYLNNIIPRF_					0	0	0		ENSG00000266028|ENST00000573034|SRGAP2;nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000171943|ENST00000367123|SRGAP2C	ENSG00000266028|ENST00000573034|SRGAP2	ENSG00000266028|ENST00000573034|SRGAP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	631.866423	1261.71829	0.18478	0.00011676	-0.52271	-0.00033028	-0.33793	-0.00021352	631.8665945193526	76.189	0.69436	76.242	75.594	76.289	0.053413	0.029536	-0.0004087	NaN	60.074	27	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304020			17034	8674	9609	9610							0.09790242219492029
IYLNNVIMRF	10	Oxidation (M)	_IYLNNVIM(Oxidation (M))RF_		IYLNNVIM(1)RF		IYLNNVIM(160)RF	0	0	1		SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant;ENSG00000196935|ENST00000355086|SRGAP1;SRGAP1|p.E394Rfs*4|1|0.24|ENSG00000196935|chr12:64078971-64078972|-/C|frameshift_variant;ENST00000537556.1_1_12:64238596-64474299:+|nuORF;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1	SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant	SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8499755859375	2	649.849916	1297.68528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.887	1	65.976	65.476	66.476	0.088882								0	0	0	4.8914E-15	1	16453	16453		155.03	118.9	1				17035	7914	9610	9611	21535	21535		864			0.04834292105147142
IYLNNVIMRF	10	Oxidation (M)	_IYLNNVIM(Oxidation (M))RF_		IYLNNVIM(1)RF		IYLNNVIM(160)RF	0	0	1		SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant;ENSG00000196935|ENST00000355086|SRGAP1;SRGAP1|p.E394Rfs*4|1|0.24|ENSG00000196935|chr12:64078971-64078972|-/C|frameshift_variant;ENST00000537556.1_1_12:64238596-64474299:+|nuORF;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1	SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant	SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8504638671875	2	649.849916	1297.68528	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.014	1	66.001	65.501	66.501	-0.013588								0	0	0	4.8914E-15	1	16488	16488		155.03	118.9	1				17036	7914	9610	9611	21536	21536		864			0.04834292105147142
IYLNNWNL	8	Unmodified	_IYLNNWNL_					0	0	0			REV__ENST00000417723.1_1_3:11874583-11886385:-|nuORF	REV__ENST00000417723.1_1_3:11874583-11886385:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8056640625	2	525.274367	1048.53418	0.67362	0.00035384	-0.14821	-7.7852E-05	0.52541	0.00027598	525.2746641104803	55.326	0.40157	55.397	55.216	55.618	0.070889					28	14	3	0	0	0	0.34046	1	13217	13217		14.582	0	1	369990	+		17037	16242	9611	9612	21537	21537					0.01185473788791569
IYLNSSCIF	9	Unmodified	_IYLNSSCIF_					0	0	0			REV__ENST00000588883.5_1_19:44679604-44681824:+|nuORF	REV__ENST00000588883.5_1_19:44679604-44681824:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2962036132812	2	530.26261	1058.51067	0.32702	0.00017341	-2.6571	-0.0014089	-2.33	-0.0012355	530.2614096573415	60.354	0.36887	60.354	60.126	60.495	0					24	13	3	0	0	0	0.1524	1	14782	14782		39.957	5.8549	1	427600	+		17038	17381	9612	9613	21538	21538					-0.016247080400262348
IYLNSSCIF	9	Unmodified	_IYLNSSCIF_					0	0	0			REV__ENST00000588883.5_1_19:44679604-44681824:+|nuORF	REV__ENST00000588883.5_1_19:44679604-44681824:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	530.26261	1058.51067	0.48137	0.00025526	-2.1566	-0.0011435	-1.6752	-0.00088829	530.2616387117803	60.404	0.34801	60.392	60.137	60.485	-0.011486	0.01725	0.00015987	NaN	39.957	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	600000	+		17039	17381	9612	9613							-0.016247080400262348
IYLNSSLVQF	10	Unmodified	_IYLNSSLVQF_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.3215942382812	2	592.321514	1182.62847	0.58342	0.00034557	-0.40706	-0.00024111	0.17637	0.00010447	592.3211044809025	79.202	0.92242	79.202	78.929	79.851	0					92	37	3	0	0	0	5.2621E-09	3	20528	20484;20528;20576		173.69	125.94	1	1406200			17040	441	9613	9614	21539;21540;21541	21540					0.04446567820264136
IYLNSSLVQF	10	Unmodified	_IYLNSSLVQF_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.321533203125	2	592.321514	1182.62847	0.54932	0.00032537	-0.41868	-0.00024799	0.13063	7.7377E-05	592.3210856596477	79.135	1.1827	79.196	78.896	80.079	0.061417					106	49	3	0	0	0	1.5864E-08	3	20507	20464;20507;20550		160.69	110.76	1	1432800			17041	441	9613	9614	21542;21543;21544	21543					0.04446567820264136
IYLNSSLVQF	10	Unmodified	_IYLNSSLVQF_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.3218383789062	2	592.321514	1182.62847	0.59625	0.00035317	-0.38062	-0.00022545	0.21563	0.00012773	592.3211133910647	79.241	1.1036	79.212	78.954	80.058	-0.028931					89	43	3	0	0	0	1.3455E-13	3	20491	20491;20532;20579		187.3	131.12	1	1563500			17042	441	9613	9614	21545;21546;21547	21545					0.04446567820264136
IYLPEADSILF	11	Unmodified	_IYLPEADSILF_					0	0	0		ENSG00000061918|ENST00000264424|GUCY1B1;nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.8429565429688	2	640.842279	1279.67001	0.34552	0.00022142	1.1083	0.00071026	1.4538	0.00093168	640.8419288504455	91.824	0.54486	91.824	91.673	92.218	0					89	35	4	0	0	0	0.082753	2	24427	24427;24475		43.772	34.389	1	253440			17043	761	9614	9615	21548;21549	21548					0.04135703788938372
IYLPEADSILF	11	Unmodified	_IYLPEADSILF_					0	0	0		ENSG00000061918|ENST00000264424|GUCY1B1;nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.8422241210938	2	640.842279	1279.67001	0.48724	0.00031224	2.2762	0.0014587	2.7634	0.0017709	640.8427264181735	91.705	0.54005	91.796	91.632	92.172	0.090668					76	32	4	0	0	0	0.062755	1	24408	24408		49.554	38.06	1	262790			17044	761	9614	9615	21550	21550					0.04135703788938372
IYLPIANVARI	11	Unmodified	_IYLPIANVARI_					0	0	0		ENSG00000120837|ENST00000240055|NFYB	ENSG00000120837|ENST00000240055|NFYB	ENSG00000120837|ENST00000240055|NFYB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.8822631835938	2	621.882073	1241.74959	0.18371	0.00011424	-0.95024	-0.00059094	-0.76653	-0.00047669	621.8818583867179	73.393	0.69975	73.393	72.989	73.689	0					36	24	3	0	0	0	0.076087	2	18773	18773;18780		45.7	34.876	1	372260			17045	2968	9615	9616	21551;21552	21551					0.13838815253598113
IYLPIANVARI	11	Unmodified	_IYLPIANVARI_					0	0	0		ENSG00000120837|ENST00000240055|NFYB	ENSG00000120837|ENST00000240055|NFYB	ENSG00000120837|ENST00000240055|NFYB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.88232421875	2	621.882073	1241.74959	-0.04144	-2.5771E-05	-0.75748	-0.00047106	-0.79892	-0.00049683	621.882077985482	73.262	0.63364	73.315	73.091	73.725	0.053841					41	22	3	0	0	0	0.01293	2	18765	18765;18816		63.961	53.137	1	340530			17046	2968	9615	9616	21553;21554	21553					0.13838815253598113
IYLPIANVARI	11	Unmodified	_IYLPIANVARI_					0	0	0		ENSG00000120837|ENST00000240055|NFYB	ENSG00000120837|ENST00000240055|NFYB	ENSG00000120837|ENST00000240055|NFYB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.8821411132812	2	621.882073	1241.74959	0.21761	0.00013533	-1.0341	-0.00064306	-0.81645	-0.00050773	621.8819026205155	73.431	0.6249	73.401	73.042	73.667	-0.029305					40	22	3	0	0	0	0.069534	1	18769	18769		47.594	36.77	1	369340			17047	2968	9615	9616	21555	21555					0.13838815253598113
IYLQLWRL	8	Unmodified	_IYLQLWRL_					0	0	0			REV__ENSG00000101323|ENST00000378789|HAO1	REV__ENSG00000101323|ENST00000378789|HAO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.8246459960938	2	552.831852	1103.64915	0.37308	0.00020625	-3.5913	-0.0019854	-3.2182	-0.0017791	552.829943361438	48.601	1.2687	48.633	48.359	49.628	0.032043					123	45	4	0	0	0	0.38703	1	11243	11243		20.871	0.29028	1	4354300	+		17048	14262	9616	9617	21556	21556					0.10147202990583537
IYLRDPVQV	9	Unmodified	_IYLRDPVQV_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2797241210938	2	551.816399	1101.61824	0.4592	0.00025339	-0.28796	-0.0001589	0.17124	9.4494E-05	551.8163007764766	53.176	0.56039	53.176	52.932	53.493	0					40	20	2	0	0	0	0.075068	1	12511	12511		57.249	22.847	1	1887500			17049	3826	9617	9618	21557	21557					0.07150004885693306
IYLRDPVQV	9	Unmodified	_IYLRDPVQV_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2797241210938	2	551.816399	1101.61824	0.62707	0.00034603	-0.37043	-0.00020441	0.25664	0.00014162	551.816280078258	53.164	0.59615	53.22	52.913	53.509	0.056259					37	21	2	0	0	0	0.082647	1	12500	12500		61.602	21.652	1	2035500			17050	3826	9617	9618	21558	21558					0.07150004885693306
IYLRLLVKLYR	11	Unmodified	_IYLRLLVKLYR_					0	0	0		ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENSG00000063177|ENST00000549920|RPL18	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2535705566406	3	483.981657	1448.92314	0.39662	0.00019196	-1.3013	-0.00062982	-0.90471	-0.00043786	483.98106546918166	44.903	1.1169	44.972	44.711	45.828	0.068569					59	39	2	0	0	0	0.33346	1	9941	9941		0.50596	0.41111	1	550290			17051	771	9618	9619	21559	21559					0.21663601029899837
IYLRRQFD	8	Unmodified	_IYLRRQFD_					0	0	0		nc|ENSG00000197410|Q6V1P9-5|DCHS2;DCHS2|p.F2297Lfs*40|1|0.22|ENSG00000197410|chr4:154236396-154236396|A/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2	nc|ENSG00000197410|Q6V1P9-5|DCHS2	nc|ENSG00000197410|Q6V1P9-5|DCHS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3536987304688	2	555.806365	1109.59818	0.33708	0.00018735	-1.0087	-0.00056065	-0.67165	-0.00037331	556.3066007285768	90.909	0.18702	90.909	90.747	90.934	0					21	16	2	0	0	0	0.34167	1	24111	24111		7.2892	1.0834	1	189780			17052	257	9619	9620	21560	21560					0.047762539457608
IYLRRQFD	8	Unmodified	_IYLRRQFD_					0	0	0		nc|ENSG00000197410|Q6V1P9-5|DCHS2;DCHS2|p.F2297Lfs*40|1|0.22|ENSG00000197410|chr4:154236396-154236396|A/-|frameshift_variant;ENSG00000197410|ENST00000357232|DCHS2	nc|ENSG00000197410|Q6V1P9-5|DCHS2	nc|ENSG00000197410|Q6V1P9-5|DCHS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3536987304688	2	555.806365	1109.59818	0.39266	0.00021824	-0.51677	-0.00028722	-0.12411	-6.8984E-05	556.307191818946	90.856	0.24945	90.857	90.665	90.915	0.00039673					33	21	2	0	0	0	0.32435	1	24101	24101		11.64	1.5664	1	122830			17053	257	9619	9620	21561	21561					0.047762539457608
IYLSIYLSV	9	Unmodified	_IYLSIYLSV_					0	0	0		ENST00000550329.1_1_12:51401937-51404511:-|nuORF	ENST00000550329.1_1_12:51401937-51404511:-|nuORF	ENST00000550329.1_1_12:51401937-51404511:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.8202514648438	2	535.810251	1069.60595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.392	1	45.392	44.892	45.892	0								0	0	0	0.21357	1	10142	10142		18.135	2.3668	1				17054	11796	9620	9621	21562	21562					0.07392968422641388
IYLSRQRK	8	Unmodified	_IYLSRQRK_					0	0	0			REV__nc|ENSG00000107968|P41279-2|MAP3K8	REV__nc|ENSG00000107968|P41279-2|MAP3K8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3114624023438	2	532.322183	1062.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.143	1	46.143	45.643	46.643	0								0	0	0	0.34229	1	10373	10373		18.135	4.2289	1		+		17055	14578	9621	9622	21563	21563					0.101002466996988
IYLTFPVAM	9	Oxidation (M)	_IYLTFPVAM(Oxidation (M))_		IYLTFPVAM(1)		IYLTFPVAM(190)	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.78369140625	2	535.783179	1069.5518	0.71421	0.00038266	-0.28033	-0.0001502	0.43388	0.00023247	535.78316270365	77.197	1.8278	77.197	76.53	78.358	0					200	67	6	0	0	0	4.2225E-11	4	19963	19866;19914;19963;20014		189.49	189.49	1	13917000			17056	8464	9622	9623	21564;21565;21566;21567	21566		908			0.019810529994401804
IYLTFPVAM	9	Oxidation (M)	_IYLTFPVAM(Oxidation (M))_		IYLTFPVAM(1)		IYLTFPVAM(190)	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7835693359375	2	535.783179	1069.5518	0.51459	0.00027571	-0.096712	-5.1817E-05	0.41788	0.00022389	535.783282413454	77.165	2.4752	77.221	76.833	79.308	0.055412					213	94	5	0	0	0	4.2225E-11	3	19942	19842;19889;19942		189.49	189.49	1	13187000			17057	8464	9622	9623	21568;21569;21570	21570		908			0.019810529994401804
IYLTFPVAM	9	Oxidation (M)	_IYLTFPVAM(Oxidation (M))_		IYLTFPVAM(1)		IYLTFPVAM(170)	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7836303710938	2	535.783179	1069.5518	0.84078	0.00045048	-0.27594	-0.00014785	0.56484	0.00030263	535.7831140543201	77.274	2.4474	77.242	76.829	79.276	-0.031334					247	93	5	0	0	0	2.4965E-07	3	19913	19859;19913;19961		170.4	170.4	1	13499000			17058	8464	9622	9623	21571;21572;21573	21572		908			0.019810529994401804
IYLTFPVAMF	10	Oxidation (M)	_IYLTFPVAM(Oxidation (M))F_		IYLTFPVAM(1)F		IYLTFPVAM(150)F	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.3172607421875	2	609.317386	1216.62022	0.28967	0.0001765	0.0166	1.0115E-05	0.30627	0.00018662	609.3173746593436	92.86	0.80591	92.86	92.584	93.39	0					189	65	4	0	0	0	1.4625E-05	3	24718	24679;24718;24756		147.83	121.41	1	1053200			17059	8464	9623	9624	21574;21575;21576	21575		908			0.02057297579290207
IYLTFPVAMF	10	Oxidation (M)	_IYLTFPVAM(Oxidation (M))F_		IYLTFPVAM(1)F		IYLTFPVAM(150)F	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.3173217773438	2	609.317386	1216.62022	0.35401	0.0002157	1.021	0.00062212	1.375	0.00083783	609.3186297244386	92.724	1.6231	92.814	92.524	94.147	0.089195					266	133	4	0	0	0	1.4625E-05	3	24675	24634;24675;24714		147.83	83.595	1	1171700			17060	8464	9623	9624	21577;21578;21579	21578		908			0.02057297579290207
IYLTFPVAMF	10	Oxidation (M)	_IYLTFPVAM(Oxidation (M))F_		IYLTFPVAM(1)F		IYLTFPVAM(150)F	0	0	1		ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	ENST00000601829.1_1_19:7694719-7695635:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.3172607421875	2	609.317386	1216.62022	0.43439	0.00026468	0.73512	0.00044792	1.1695	0.0007126	609.3183792953625	92.858	1.3901	92.858	92.589	93.98	0.00046539					244	116	4	0	0	0	1.4625E-05	3	24670	24670;24713;24751		147.83	83.595	1	1221300			17061	8464	9623	9624	21580;21581;21582	21580		908			0.02057297579290207
IYLVIDLFP	9	Unmodified	_IYLVIDLFP_					0	0	0			REV__nc|ENSG00000117528|P28288-3|ABCD3	REV__nc|ENSG00000117528|P28288-3|ABCD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.26220703125	2	546.820618	1091.62668	0.61286	0.00033512	4.3821	0.0023962	4.995	0.0027314	546.8247399465198	38.106	0.44413	38.197	38.011	38.455	0.090881					37	15	3	0	0	0	0.23783	1	7863	7863		18.135	0	1	281240	+		17062	14976	9624	9625	21583	21583					0.08453558802352745
IYLVSIPEL	9	Unmodified	_IYLVSIPEL_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.8106689453125	2	523.810251	1045.60595	0.51677	0.00027069	0.52362	0.00027428	1.0404	0.00054497	523.8103675061733	88.342	0.61765	88.432	88.107	88.724	0.089195					63	27	3	0	0	0	0.0085732	1	23334	23334		81.613	14.269	1	730980			17063	7526	9625	9626	21584	21584					0.08496968422650752
IYLVSIPEL	9	Unmodified	_IYLVSIPEL_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	523.810251	1045.60595	0.63454	0.00033238	0.30885	0.00016178	0.94339	0.00049416	523.8103216506129	88.459	0.67944	88.459	88.165	88.844	0	0.032293	-9.5932E-05	NaN	81.613	82	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	557980			17064	7526	9625	9626							0.08496968422650752
IYLVSIPEL	9	Unmodified	_IYLVSIPEL_					0	0	0		ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	ENSG00000185344|ENST00000330342|ATP6V0A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	523.810251	1045.60595	0.54636	0.00028619	0.39023	0.0002044	0.93658	0.00049059	523.8103065211646	88.393	0.60211	88.39	88.176	88.778	-0.0028381	-0.036736	-1.0676E-05	NaN	81.613	68	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	724290			17065	7526	9625	9626							0.08496968422650752
IYLWKWDDK	9	Unmodified	_IYLWKWDDK_					0	0	0		ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.2701416015625	3	422.888763	1265.64446	-0.15605	-6.599E-05	0.92433	0.00039089	0.76828	0.0003249	423.22311411538914	22.435	1.0358	22.347	21.817	22.853	-0.087608					74	37	3	0	0	0	0.259	1	3029	3029		5.2969	0	1	88245			17066	3665	9626	9627	21585	21585					0.022262740571704853
IYLWKWDDK	9	Unmodified	_IYLWKWDDK_					0	0	0		ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.26995849609375	3	422.888763	1265.64446	-0.17026	-7.2003E-05	0.81829	0.00034605	0.64802	0.00027404	423.22322706418873	22.475	1.1992	22.43	21.885	23.084	-0.044867					67	42	2	0	0	0	0.259	1	3087	3087		5.2969	2.3016	1	88816			17067	3665	9626	9627	21586	21586					0.022262740571704853
IYLYLPLLTN	10	Unmodified	_IYLYLPLLTN_					0	0	0			REV__ENST00000517976.5_1_8:96047742-96070162:+|nuORF	REV__ENST00000517976.5_1_8:96047742-96070162:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.9062805175781	3	408.240914	1221.70091	0.19806	8.0855E-05	-0.47886	-0.00019549	-0.28081	-0.00011464	408.2406904797832	83.859	1.0921	83.937	82.983	84.075	0.077095					56	42	2	0	0	0	0.32122	1	21993	21993		0.77653	0	1	209650	+		17068	16734	9627	9628	21587	21587					0.09892901893863382
IYMDTLNIF	9	Oxidation (M)	_IYM(Oxidation (M))DTLNIF_		IYM(1)DTLNIF		IYM(190)DTLNIF	0	0	1		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.2813720703125	2	573.281	1144.54745	0.31436	0.00018021	-0.76335	-0.00043761	-0.449	-0.0002574	573.2808525407091	76.805	1.9673	76.805	76.422	78.389	0					235	72	5	0	0	0	4.5012E-11	6	19783	19737;19783;19819;19864;19918;19971		188.58	131.11	1	16058000			17069	5990	9628	9629	21588;21589;21590;21591;21592;21593	21589		705			-0.019044562141289134
IYMDTLNIF	9	Oxidation (M)	_IYM(Oxidation (M))DTLNIF_		IYM(1)DTLNIF		IYM(52)DTLNIF	0	0	1		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.281494140625	2	573.281	1144.54745	0.51478	0.00029511	-0.90203	-0.00051712	-0.38725	-0.000222	573.2803031524579	78.701	1.1906	78.701	78.276	79.467	0					64	47	2	0	0	0	0.051692	1	20366	20366		52.268	12.311	1	162920			17070	5990	9628	9629	21594	21594		705			-0.019044562141289134
IYMDTLNIF	9	Oxidation (M)	_IYM(Oxidation (M))DTLNIF_		IYM(1)DTLNIF		IYM(190)DTLNIF	0	0	1		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.28125	2	573.281	1144.54745	0.28439	0.00016304	-0.71482	-0.0004098	-0.43043	-0.00024676	573.2809197253107	76.742	2.4375	76.795	76.451	78.888	0.053421					221	88	5	0	0	0	4.5012E-11	6	19762	19714;19762;19812;19865;19915;19970		188.58	131.11	1	17337000			17071	5990	9628	9629	21595;21596;21597;21598;21599;21600	21596		705			-0.019044562141289134
IYMDTLNIF	9	Oxidation (M)	_IYM(Oxidation (M))DTLNIF_		IYM(1)DTLNIF		IYM(44)DTLNIF	0	0	1		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.2800903320312	2	573.281	1144.54745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.452	1	78.51	78.01	79.01	0.058151								0	0	0	0.11063	1	20288	20288		43.858	11.553	1				17072	5990	9628	9629	21601	21601		705			-0.019044562141289134
IYMDTLNIF	9	Oxidation (M)	_IYM(Oxidation (M))DTLNIF_		IYM(1)DTLNIF		IYM(44)DTLNIF	0	0	1		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.281494140625	2	573.281	1144.54745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.628	1	78.687	78.187	79.187	0.058151								0	0	0	0.11063	1	20342	20342		43.858	11.553	1				17073	5990	9628	9629	21602	21602		705			-0.019044562141289134
IYMDTLNIF	9	Oxidation (M)	_IYM(Oxidation (M))DTLNIF_		IYM(1)DTLNIF		IYM(190)DTLNIF	0	0	1		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.281005859375	2	573.281	1144.54745	0.48294	0.00027686	-1.0393	-0.00059581	-0.55635	-0.00031895	573.2807481096695	76.823	1.556	76.792	76.452	78.008	-0.031334					197	56	5	0	0	0	4.5012E-11	6	19746	19746;19789;19834;19879;19928;19983		188.58	131.11	1	17079000			17074	5990	9628	9629	21603;21604;21605;21606;21607;21608	21603		705			-0.019044562141289134
IYMDTLNIF	9	Oxidation (M)	_IYM(Oxidation (M))DTLNIF_		IYM(1)DTLNIF		IYM(61)DTLNIF	0	0	1		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.2814331054688	2	573.281	1144.54745	0.60741	0.00034822	-0.29142	-0.00016707	0.31599	0.00018115	573.2801886731603	78.528	1.2185	78.497	78.301	79.519	-0.030434					82	49	3	0	0	0	0.027237	1	20340	20340		61.357	29.052	1	242370			17075	5990	9628	9629	21609	21609		705			-0.019044562141289134
IYMDTLNIFM	10	2 Oxidation (M)	_IYM(Oxidation (M))DTLNIFM(Oxidation (M))_		IYM(1)DTLNIFM(1)		IYM(180)DTLNIFM(180)	0	0	2		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.7986450195312	2	646.7987	1291.58285	0.31214	0.00020189	-0.65636	-0.00042453	-0.34422	-0.00022264	646.798435402808	75.466	0.72511	75.466	75.178	75.903	0					68	25	4	0	0	0	2.6916E-09	2	19378	19378;19431		176.84	146.2	1	782880			17076	5990	9629	9630	21610;21611	21610		705;706			-0.05128161748621096
IYMDTLNIFM	10	2 Oxidation (M)	_IYM(Oxidation (M))DTLNIFM(Oxidation (M))_		IYM(1)DTLNIFM(1)		IYM(150)DTLNIFM(150)	0	0	2		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.798095703125	2	646.7987	1291.58285	0.41755	0.00027007	-0.69465	-0.0004493	-0.2771	-0.00017923	646.7983382889853	75.43	0.58896	75.483	75.218	75.807	0.052361					65	21	4	0	0	0	1.5866E-05	2	19342	19342;19390		147.06	116.42	1	674110			17077	5990	9629	9630	21612;21613	21612		705;706			-0.05128161748621096
IYMDTLNIFM	10	2 Oxidation (M)	_IYM(Oxidation (M))DTLNIFM(Oxidation (M))_		IYM(1)DTLNIFM(1)		IYM(160)DTLNIFM(160)	0	0	2		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	646.7987670898438	2	646.7987	1291.58285	0.47467	0.00030702	-0.85857	-0.00055532	-0.3839	-0.00024831	646.798218891869	75.533	0.6458	75.502	75.235	75.881	-0.031487					64	23	4	0	0	0	1.6006E-08	3	19414	19364;19414;19462		160.52	112.77	1	860110			17078	5990	9629	9630	21614;21615;21616	21615		705;706			-0.05128161748621096
IYMGSFMLML	10	Unmodified	_IYMGSFMLML_					0	0	0		ENSG00000163624|ENST00000295887|CDS1;CDS1|p.F178Kfs*30|1|0.06|ENSG00000163624|chr4:84619484-84619485|-/AAGACCAATTCAAGATATAT|frameshift_variant	ENSG00000163624|ENST00000295887|CDS1	ENSG00000163624|ENST00000295887|CDS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.30322265625	2	603.291999	1204.56945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.4	1	63.4	62.9	63.9	0								0	0	0	0.34755	1	15700	15700		15.847	0	1				17079	5710	9630	9631	21617	21617					-0.024656910615703964
IYMPMIPEL	9	2 Oxidation (M)	_IYM(Oxidation (M))PM(Oxidation (M))IPEL_		IYM(1)PM(1)IPEL		IYM(44)PM(44)IPEL	0	0	2		ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.7801513671875	2	569.779779	1137.545	0.030604	1.7437E-05	-0.21258	-0.00012112	-0.18198	-0.00010369	569.7801025407231	73.73	0.94838	73.73	73.081	74.029	0					96	33	4	0	0	0	0.072844	2	18836	18836;18899		44.407	33.583	1	763460			17080	3542	9631	9632	21618;21619	21618		448;449			-0.018266279434101307
IYMPMIPEL	9	2 Oxidation (M)	_IYM(Oxidation (M))PM(Oxidation (M))IPEL_		IYM(1)PM(1)IPEL		IYM(78)PM(78)IPEL	0	0	2		ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.7800903320312	2	569.779779	1137.545	0.25491	0.00014524	-0.58294	-0.00033215	-0.32803	-0.00018691	569.7799902385531	73.652	1.1398	73.704	73.036	74.176	0.052361					111	40	5	0	0	0	0.010938	2	18823	18823;18872		77.984	63.146	1	692320			17081	3542	9631	9632	21620;21621	21620		448;449			-0.018266279434101307
IYMPMIPEL	9	2 Oxidation (M)	_IYM(Oxidation (M))PM(Oxidation (M))IPEL_		IYM(1)PM(1)IPEL		IYM(54)PM(54)IPEL	0	0	2		ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.7802124023438	2	569.779779	1137.545	0.19474	0.00011096	-0.24121	-0.00013744	-0.046469	-2.6477E-05	569.7799968493944	73.725	0.93215	73.694	73.1	74.032	-0.030655					95	33	4	0	0	0	0.048175	1	18928	18928		53.576	38.737	1	722440			17082	3542	9631	9632	21622	21622		448;449			-0.018266279434101307
IYMQVNSSF	9	Oxidation (M)	_IYM(Oxidation (M))QVNSSF_		IYM(1)QVNSSF		IYM(100)QVNSSF	0	0	1		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.Y1107Ifs*12|1|0.29|ENSG00000175054|chr3:142547763-142547763|A/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3299560546875	2	552.755149	1103.49575	0.60906	0.00033666	0.32024	0.00017701	0.92929	0.00051367	552.7553406037298	47.792	0.41257	47.792	47.411	47.823	0					28	14	3	0	0	0	0.0057766	1	10839	10839		99.799	61.623	1	481690			17083	6835	9632	9633	21623	21623		776			-0.051861999080074384
IYMQVNSSF	9	Oxidation (M)	_IYM(Oxidation (M))QVNSSF_		IYM(1)QVNSSF		IYM(89)QVNSSF	0	0	1		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.Y1107Ifs*12|1|0.29|ENSG00000175054|chr3:142547763-142547763|A/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.329833984375	2	552.755149	1103.49575	0.59843	0.00033079	0.34956	0.00019322	0.94799	0.00052401	552.7552806238047	47.604	0.4075	47.651	47.428	47.836	0.04752					23	14	2	0	0	0	0.0057766	1	10811	10811		88.954	50.778	1	297390			17084	6835	9632	9633	21624	21624		776			-0.051861999080074384
IYMQVNSSF	9	Oxidation (M)	_IYM(Oxidation (M))QVNSSF_		IYM(1)QVNSSF		IYM(100)QVNSSF	0	0	1		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.Y1107Ifs*12|1|0.29|ENSG00000175054|chr3:142547763-142547763|A/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3299560546875	2	552.755149	1103.49575	0.67031	0.00037052	0.41504	0.00022942	1.0854	0.00059994	552.7553470906475	47.71	0.36936	47.754	47.455	47.824	0.04332					23	13	2	0	0	0	0.0057766	1	10809	10809		99.799	61.623	1	524810			17085	6835	9632	9633	21625	21625		776			-0.051861999080074384
IYMRQEGF	8	Unmodified	_IYMRQEGF_					0	0	0		ENST00000472931.6_1_7:13946033-14025001:-|nuORF;nc|ENSG00000006468|P50549-4|ETV1;nc|ENSG00000006468|P50549-5|ETV1;nc|ENSG00000006468|P50549-6|ETV1;nc|ENSG00000006468|P50549-2|ETV1;ENSG00000006468|ENST00000430479|ETV1	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.253173828125	2	522.252577	1042.4906	0.61944	0.0003235	0.03921	2.0478E-05	0.65865	0.00034398	522.2528802927925	87.946	1.9624	87.946	87.045	89.007	0					295	94	7	0	0	0	0.35375	1	23268	23268		24.674	3.8027	1	5285100			17086	359	9633	9634	21626	21626					-0.028944589799721143
IYMRQEGF	8	Unmodified	_IYMRQEGF_					0	0	0		ENST00000472931.6_1_7:13946033-14025001:-|nuORF;nc|ENSG00000006468|P50549-4|ETV1;nc|ENSG00000006468|P50549-5|ETV1;nc|ENSG00000006468|P50549-6|ETV1;nc|ENSG00000006468|P50549-2|ETV1;ENSG00000006468|ENST00000430479|ETV1	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	ENST00000472931.6_1_7:13946033-14025001:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2530517578125	2	522.252577	1042.4906	0.4834	0.00025246	0.11159	5.8276E-05	0.59498	0.00031073	522.2529404948716	87.845	2.8795	87.934	86.862	89.741	0.089195					407	144	7	0	0	0	0.41097	1	23221	23221		18.135	0	1	5027300			17087	359	9633	9634	21627	21627					-0.028944589799721143
IYNCLHIF	8	Unmodified	_IYNCLHIF_					0	0	0			REV__ENSG00000157150|ENST00000287814|TIMP4	REV__ENSG00000157150|ENST00000287814|TIMP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2783813476562	2	511.760038	1021.50552	0.42092	0.00021541	-0.91895	-0.00047028	-0.49804	-0.00025488	512.2619288669252	83.377	0.23991	83.451	83.325	83.565	0.073959					11	8	2	0	0	0	0.37319	1	21787	21787		22.453	3.1956	1	73855	+		17088	16775	9634	9635	21628	21628					-0.004369671119775376
IYNDPTLEVC	10	Unmodified	_IYNDPTLEVC_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.744873046875	2	583.773539	1165.53253	0.51565	0.00030102	1.5171	0.00088567	2.0328	0.0011867	584.275976442488	64.459	0.3189	64.45	64.315	64.634	-0.0095367					13	11	2	0	0	0	0.31267	1	16017	16017		14.838	4.7643	1	285180			17089	787	9635	9636	21629	21629					-0.04361948082100753
IYNEYIYDL	9	Unmodified	_IYNEYIYDL_					0	0	0		nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.28857421875	2	603.289879	1204.56521	0.45368	0.0002737	-1.025	-0.0006184	-0.57137	-0.0003447	603.2889152586167	67.309	0.57008	67.309	67.022	67.592	0					46	19	3	0	0	0	0.18208	1	16950	16950		26.268	8.1218	1	302140			17090	4128	9636	9637	21630	21630					-0.028894176876065103
IYNEYIYDL	9	Unmodified	_IYNEYIYDL_					0	0	0		nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.289794921875	2	603.289879	1204.56521	0.45774	0.00027615	-1.4826	-0.00089442	-1.0248	-0.00061827	603.2888229334012	67.15	0.5029	67.228	67.012	67.515	0.078041					32	17	2	0	0	0	0.13748	1	16837	16837		32.786	1.5173	1	415680			17091	4128	9636	9637	21631	21631					-0.028894176876065103
IYNEYIYDL	9	Unmodified	_IYNEYIYDL_					0	0	0		nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.2894897460938	2	603.289879	1204.56521	0.19989	0.00012059	-0.68246	-0.00041172	-0.48257	-0.00029113	603.2891154991944	67.283	0.63505	67.267	67.009	67.644	-0.016296					44	21	3	0	0	0	0.13748	2	16884	16884;16940		32.786	8.7651	1	383590			17092	4128	9636	9637	21632;21633	21632					-0.028894176876065103
IYNEYIYDL	9	Unmodified	_IYNEYIYDL_					0	0	0		nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	603.289879	1204.56521	0.45368	0.0002737	-1.025	-0.0006184	-0.57137	-0.0003447	603.2889152586167	67.309	0.57008	67.309	67.022	67.592	0	0.041586	2.2258E-05	NaN	32.786	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302140			17093	4128	9636	9637							-0.028894176876065103
IYNEYIYDL	9	Unmodified	_IYNEYIYDL_					0	0	0		nc|ENSG00000138182|Q96Q89-4|KIF20B;nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	603.289879	1204.56521	0.45774	0.00027615	-1.4826	-0.00089442	-1.0248	-0.00061827	603.2888229334012	67.15	0.5029	67.228	67.012	67.515	0.078041	-0.040236	-0.00052978	NaN	32.786	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415680			17094	4128	9636	9637							-0.028894176876065103
IYNFLSGKF	9	Unmodified	_IYNFLSGKF_					0	0	0		ENSG00000121764|ENST00000403528|HCRTR1;ENSG00000137252|ENST00000370862|HCRTR2	ENSG00000121764|ENST00000403528|HCRTR1	ENSG00000121764|ENST00000403528|HCRTR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7907104492188	2	544.792392	1087.57023	0.363	0.00019776	-0.27427	-0.00014942	0.088726	4.8337E-05	544.7919684952257	73.265	1.3234	73.265	72.775	74.098	0					102	46	3	0	0	0	0.17787	1	18872	18872		26.884	3.7352	1	327320			17095	3007	9637	9638	21634	21634					0.0299493096565584
IYNFPIHAF	9	Unmodified	_IYNFPIHAF_					0	0	0		ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2921142578125	2	561.292559	1120.57057	0.30019	0.00016849	-0.051375	-2.8837E-05	0.24881	0.00013966	561.2921208258992	68.374	1.3645	68.374	67.809	69.174	0					132	49	4	0	0	0	0.0036555	1	17175	17175		97.075	70.733	1	1730600			17096	8030	9638	9639	21635	21635					0.01510350685521189
IYNFPIHAF	9	Unmodified	_IYNFPIHAF_					0	0	0		ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2694702148438	2	561.292559	1120.57057	0.30007	0.00016842	0.020601	1.1563E-05	0.32067	0.00017999	561.2922375246798	68.322	1.4101	68.394	67.827	69.237	0.071938					119	51	4	0	0	0	0.0007571	1	17195	17195		117.6	91.257	1	1943100			17097	8030	9638	9639	21636	21636					0.01510350685521189
IYNFPIHAF	9	Unmodified	_IYNFPIHAF_					0	0	0		ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2927856445312	2	561.292559	1120.57057	0.32732	0.00018372	-0.11112	-6.2374E-05	0.21619	0.00012135	561.2922589812994	68.394	1.254	68.375	67.988	69.242	-0.019157					117	44	4	0	0	0	6.8028E-05	1	17189	17189		146.01	111.82	1	1945800			17098	8030	9638	9639	21637	21637					0.01510350685521189
IYNGDMEKI	9	Oxidation (M)	_IYNGDM(Oxidation (M))EKI_		IYNGDM(1)EKI		IYNGDM(120)EKI	0	0	1		ENSG00000176171|ENST00000368636|BNIP3;ENST00000550043.1_1_14:28733783-28734191:+|nuORF	ENSG00000176171|ENST00000368636|BNIP3	ENSG00000176171|ENST00000368636|BNIP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7601318359375	2	549.760432	1097.50631	0.48364	0.00026589	-0.89004	-0.00048931	-0.4064	-0.00022342	549.7600510025069	30.178	1.4487	30.178	29.86	31.309	0					161	51	5	0	0	0	0.00082904	4	5492	5492;5537;5584;5635		124.95	66.274	1	11488000			17099	6905	9639	9640	21638;21639;21640;21641	21638		780			-0.03854217253592651
IYNGDMEKI	9	Oxidation (M)	_IYNGDM(Oxidation (M))EKI_		IYNGDM(1)EKI		IYNGDM(120)EKI	0	0	1		ENSG00000176171|ENST00000368636|BNIP3;ENST00000550043.1_1_14:28733783-28734191:+|nuORF	ENSG00000176171|ENST00000368636|BNIP3	ENSG00000176171|ENST00000368636|BNIP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7601318359375	2	549.760432	1097.50631	0.14057	7.7282E-05	-0.55179	-0.00030335	-0.41121	-0.00022607	549.7602445723068	30.207	1.6014	30.234	29.864	31.466	0.027157					169	56	5	0	0	0	0.00082904	5	5489	5437;5489;5532;5575;5626		124.95	66.274	1	11783000			17100	6905	9639	9640	21642;21643;21644;21645;21646	21643		780			-0.03854217253592651
IYNGDMEKI	9	Oxidation (M)	_IYNGDM(Oxidation (M))EKI_					0	0	1		ENSG00000176171|ENST00000368636|BNIP3;ENST00000550043.1_1_14:28733783-28734191:+|nuORF	ENSG00000176171|ENST00000368636|BNIP3	ENSG00000176171|ENST00000368636|BNIP3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	549.760432	1097.50631	0.5263	0.00028934	-0.93806	-0.00051571	-0.41176	-0.00022637	549.7600183231326	30.191	1.7141	30.219	29.845	31.559	0.027946	0.0087632	-0.00013167	NaN	124.95	174	60	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10749000			17101	6905	9639	9640				780			-0.03854217253592651
IYNGETLVF	9	Unmodified	_IYNGETLVF_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2742919921875	2	528.274032	1054.53351	0.43526	0.00022994	0.63482	0.00033536	1.0701	0.0005653	528.2740154663178	69.161	1.4613	69.161	68.812	70.273	0					177	52	7	0	0	0	3.5085E-07	2	17456	17456;17499		166.45	88.298	1	4659100			17102	2696	9640	9641	21647;21648	21647					0.008426343491009902
IYNGETLVF	9	Unmodified	_IYNGETLVF_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2744140625	2	528.274032	1054.53351	0.46844	0.00024746	-0.023726	-1.2534E-05	0.44471	0.00023493	528.2740257852574	69.097	1.6152	69.169	68.83	70.445	0.071938					147	57	4	0	0	0	0.00014042	2	17441	17441;17491		134.3	66.215	1	4483000			17103	2696	9640	9641	21649;21650	21649					0.008426343491009902
IYNGETLVF	9	Unmodified	_IYNGETLVF_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2742919921875	2	528.274032	1054.53351	0.4411	0.00023302	0.014339	7.5747E-06	0.45544	0.0002406	528.2740234114605	69.162	1.6227	69.142	68.79	70.413	-0.019157					162	58	4	0	0	0	5.0285E-07	2	17453	17453;17493		160.52	91.055	1	4351400			17104	2696	9640	9641	21651;21652	21651					0.008426343491009902
IYNGFSSVLQF	11	Unmodified	_IYNGFSSVLQF_					0	0	0		ENST00000477464.1_1_10:71921354-71921671:-|nuORF;ENSG00000079332|ENST00000373241|SAR1A	ENST00000477464.1_1_10:71921354-71921671:-|nuORF	ENST00000477464.1_1_10:71921354-71921671:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.8109130859375	2	637.824421	1273.63429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.561	1	85.561	85.061	86.061	0								0	0	0	0.30227	1	22479	22479		18.721	7.9217	1				17105	1131	9641	9642	21653	21653					0.008416663319394502
IYNGFSSVLQF	11	Unmodified	_IYNGFSSVLQF_					0	0	0		ENST00000477464.1_1_10:71921354-71921671:-|nuORF;ENSG00000079332|ENST00000373241|SAR1A	ENST00000477464.1_1_10:71921354-71921671:-|nuORF	ENST00000477464.1_1_10:71921354-71921671:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.8110961914062	2	637.824421	1273.63429	0.70805	0.00045161	1.2973	0.00082742	2.0053	0.001279	637.8255428163461	85.584	0.38792	85.668	85.367	85.755	0.084251					20	14	2	0	0	0	0.20863	1	22444	22444		30.431	13.866	1	114540			17106	1131	9641	9642	21654	21654					0.008416663319394502
IYNGFSSVLQF	11	Unmodified	_IYNGFSSVLQF_					0	0	0		ENST00000477464.1_1_10:71921354-71921671:-|nuORF;ENSG00000079332|ENST00000373241|SAR1A	ENST00000477464.1_1_10:71921354-71921671:-|nuORF	ENST00000477464.1_1_10:71921354-71921671:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.8114013671875	2	637.824421	1273.63429	0.78505	0.00050072	0.50924	0.00032481	1.2943	0.00082553	637.8249043639297	85.597	0.26884	85.588	85.43	85.699	-0.0090027					13	9	2	0	0	0	0.14222	2	22457	22457;22502		36.395	20.246	1	98418			17107	1131	9641	9642	21655;21656	21655					0.008416663319394502
IYNGLYNLQ	9	Unmodified	_IYNGLYNLQ_					0	0	0			REV__ENSG00000083444|ENST00000196061|PLOD1	REV__ENSG00000083444|ENST00000196061|PLOD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2977294921875	2	549.284931	1096.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.399	1	74.399	73.899	74.899	0								0	0	0	0.16935	1	19063	19063		30.225	7.4885	1		+		17108	13933	9642	9643	21657	21657					0.010894390976545765
IYNGLYNLQ	9	Unmodified	_IYNGLYNLQ_					0	0	0			REV__ENSG00000083444|ENST00000196061|PLOD1	REV__ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2979125976562	2	549.284931	1096.55531	0.61717	0.000339	1.6525	0.00090771	2.2697	0.0012467	549.2857256303055	74.628	0.45578	74.597	74.271	74.726	-0.030655					22	15	2	0	0	0	0.155	2	19108	19051;19108		30.225	2.0516	1	353040	+		17109	13933	9642	9643	21658;21659	21659					0.010894390976545765
IYNGQLFNNL	10	Unmodified	_IYNGQLFNNL_					0	0	0		nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.3092041015625	2	598.308938	1194.60332	0.31954	0.00019118	-0.2099	-0.00012559	0.10964	6.5596E-05	598.3090019291328	69.685	0.8129	69.685	69.428	70.24	0					45	29	2	0	0	0	1.5866E-05	2	17615	17584;17615		147.06	93.226	1	745100			17110	5975	9643	9644	21660;21661	21661					0.013805130177161118
IYNGQLFNNL	10	Unmodified	_IYNGQLFNNL_					0	0	0		nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.3094482421875	2	598.308938	1194.60332	0.34773	0.00020805	-0.090456	-5.4121E-05	0.25727	0.00015393	598.3089679792768	69.587	0.73562	69.653	69.366	70.101	0.066048					38	25	2	0	0	0	1.5866E-05	2	17592	17573;17592		147.06	101.36	1	882190			17111	5975	9643	9644	21662;21663	21663					0.013805130177161118
IYNGQLFNNL	10	Unmodified	_IYNGQLFNNL_					0	0	0		nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.8206787109375	2	598.308938	1194.60332	0.31144	0.00018634	-0.37162	-0.00022234	-0.060184	-3.6008E-05	598.3090051176032	69.721	0.78223	69.699	69.435	70.217	-0.022087					47	28	3	0	0	0	0.0072369	1	17577	17577		85.642	59.373	1	706330			17112	5975	9643	9644	21664	21664					0.013805130177161118
IYNHFYIY	8	Unmodified	_IYNHFYIY_					0	0	0		ENST00000258149.9_1_12:69235976-69236204:+|nuORF	ENST00000258149.9_1_12:69235976-69236204:+|nuORF	ENST00000258149.9_1_12:69235976-69236204:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.294921875	2	566.776742	1131.53893	0.38649	0.00021905	-0.46973	-0.00026623	-0.083243	-4.718E-05	567.2779435190566	42.16	0.6927	42.245	42.063	42.755	0.085197					52	24	3	0	0	0	0.34319	1	9240	9240		5.7604	0	1	241150			17113	8943	9644	9645	21665	21665					-0.021576420684368713
IYNHGCTGLF	10	Unmodified	_IYNHGCTGLF_					0	0	0		DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant;ENSG00000197653|ENST00000673944|DNAH10;nc|ENSG00000197653|Q8IVF4|DNAH10	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.763427734375	2	562.763309	1123.51206	0.43417	0.00024433	-0.43636	-0.00024557	-0.0021885	-1.2316E-06	562.7631768215518	67.447	0.50755	67.526	67.326	67.834	0.078041					42	17	3	0	0	0	0.24715	1	16956	16956		26.884	3.7352	1	332870			17114	267	9645	9646	21666	21666					-0.04475073951266495
IYNHITTRV	9	Unmodified	_IYNHITTRV_					0	0	0		ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000508684.5_1_4:2877642-2900342:+|nuORF	ENST00000509039.5_1_4:2877642-2901297:+|nuORF	ENST00000509039.5_1_4:2877642-2901297:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.812255859375	2	558.811648	1115.60874	0.49597	0.00027716	-0.069937	-3.9081E-05	0.42604	0.00023807	558.8114329486511	29.157	0.54331	29.157	28.978	29.521	0					32	19	2	0	0	0	0.053988	1	5201	5201		51.415	20.779	1	156510			17115	1302	9646	9647	21667	21667					0.055562366001595365
IYNHITTRV	9	Unmodified	_IYNHITTRV_					0	0	0		ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000508684.5_1_4:2877642-2900342:+|nuORF	ENST00000509039.5_1_4:2877642-2901297:+|nuORF	ENST00000509039.5_1_4:2877642-2901297:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8116455078125	2	558.811648	1115.60874	0.35567	0.00019875	0.23791	0.00013295	0.59358	0.0003317	558.8116538985257	29.12	0.4444	29.132	28.944	29.389	0.012266					29	15	3	0	0	0	0.073988	1	5183	5183		43.982	19.961	1	202370			17116	1302	9646	9647	21668	21668					0.055562366001595365
IYNHITTRV	9	Unmodified	_IYNHITTRV_					0	0	0		ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000508684.5_1_4:2877642-2900342:+|nuORF	ENST00000509039.5_1_4:2877642-2901297:+|nuORF	ENST00000509039.5_1_4:2877642-2901297:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	558.811648	1115.60874	0.11176	6.2456E-05	0.58431	0.00032652	0.69608	0.00038898	558.8118005798691	29.189	0.4211	29.203	29.033	29.454	0.013474	0.038564	0.00025234	NaN	51.415	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160940			17117	1302	9646	9647							0.055562366001595365
IYNLKNPTL	9	Unmodified	_IYNLKNPTL_					0	0	0		ENSG00000164237|ENST00000296658|CMBL	ENSG00000164237|ENST00000296658|CMBL	ENSG00000164237|ENST00000296658|CMBL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.826904296875	2	538.310949	1074.60735	0.66583	0.00035842	-0.17075	-9.1918E-05	0.49508	0.00026651	538.3104863536861	48.433	0.48469	48.433	48.18	48.665	0					34	16	3	0	0	0	0.038291	1	11057	11057		57.249	17.299	1	667500			17118	5815	9647	9648	21669	21669					0.0730260251141317
IYNLKNPTL	9	Unmodified	_IYNLKNPTL_					0	0	0		ENSG00000164237|ENST00000296658|CMBL	ENSG00000164237|ENST00000296658|CMBL	ENSG00000164237|ENST00000296658|CMBL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8267822265625	2	538.310949	1074.60735	0.78599	0.00042311	-0.16077	-8.6543E-05	0.62523	0.00033657	538.3105378108952	48.373	0.53706	48.421	48.181	48.718	0.047523					38	19	3	0	0	0	0.063898	2	11046	11046;11104		47.732	14.472	1	538780			17119	5815	9647	9648	21670;21671	21670					0.0730260251141317
IYNLKNPTL	9	Unmodified	_IYNLKNPTL_					0	0	0		ENSG00000164237|ENST00000296658|CMBL	ENSG00000164237|ENST00000296658|CMBL	ENSG00000164237|ENST00000296658|CMBL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8267211914062	2	538.310949	1074.60735	0.73753	0.00039702	-0.31704	-0.00017066	0.42049	0.00022636	538.3104100454425	48.271	0.46826	48.314	48.145	48.614	0.04332					38	17	3	0	0	0	0.0091837	2	11040	11040;11101		80.676	31.122	1	658040			17120	5815	9647	9648	21672;21673	21672					0.0730260251141317
IYNMWVSL	8	Unmodified	_IYNMWVSL_					0	0	0		nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2611083984375	2	513.259871	1024.50519	-0.83242	-0.00042725	3.0768	0.0015792	2.2443	0.0011519	513.2607011685775	35.038	1.0373	35.114	34.496	35.533	0.075306					105	37	4	0	0	0	0.39956	1	7013	7013		19.439	2.4967	1	749570			17121	1029	9648	9649	21674	21674					-0.006083868318455643
IYNMWVSLF	9	Unmodified	_IYNMWVSLF_					0	0	0		nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.2748413085938	2	586.794078	1171.5736	0.43611	0.0002559	0.17653	0.00010358	0.61263	0.00035949	586.7940916767888	53.092	0.64141	53.092	52.875	53.516	0					46	23	3	0	0	0	0.17242	1	12557	12557		36.127	1.7253	1	491530			17122	1029	9649	9650	21675	21675					-0.005321422519955377
IYNPTTGEFL	10	Unmodified	_IYNPTTGEFL_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.7900390625	2	577.790047	1153.56554	0.2456	0.00014191	0.075232	4.3468E-05	0.32084	0.00018538	577.789895298852	67.962	0.84335	67.962	67.673	68.517	0					67	30	3	0	0	0	0.0086382	1	17092	17092		86.332	50.205	1	1165400			17123	911	9650	9651	21676	21676					-0.0050999796776523
IYNPTTGEFL	10	Unmodified	_IYNPTTGEFL_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.7821044921875	2	577.790047	1153.56554	0.42749	0.000247	-0.080699	-4.6627E-05	0.34679	0.00020037	577.7898556475558	67.936	0.73222	68.014	67.657	68.39	0.078041					65	25	3	0	0	0	0.11062	1	17111	17111		45.74	21.719	1	1308500			17124	911	9650	9651	21677	21677					-0.0050999796776523
IYNPTTGEFL	10	Unmodified	_IYNPTTGEFL_					0	0	0		ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	ENSG00000069849|ENST00000286371|ATP1B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.7901000976562	2	577.790047	1153.56554	0.27927	0.00016136	0.19975	0.00011542	0.47903	0.00027678	577.7898897830825	67.974	0.78919	67.957	67.672	68.461	-0.016296					58	27	3	0	0	0	0.00017183	1	17084	17084		114.2	48.967	1	1302800			17125	911	9650	9651	21678	21678					-0.0050999796776523
IYNQVKQII	9	Unmodified	_IYNQVKQII_					0	0	0		nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1	nc|ENSG00000075711|Q12959-8|DLG1	nc|ENSG00000075711|Q12959-8|DLG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8322143554688	2	559.832049	1117.64954	0.60082	0.00033636	0.029834	1.6702E-05	0.63066	0.00035306	559.8318776502515	47.156	0.72946	47.156	46.904	47.634	0					57	25	3	0	0	0	0.0018995	3	10674	10667;10674;10734		111.29	53.816	1	1709300			17126	1053	9651	9652	21679;21680;21681	21680					0.09542577919796713
IYNQVKQII	9	Unmodified	_IYNQVKQII_					0	0	0		nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1	nc|ENSG00000075711|Q12959-8|DLG1	nc|ENSG00000075711|Q12959-8|DLG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.8322143554688	2	559.832049	1117.64954	0.32087	0.00017963	0.34003	0.00019036	0.6609	0.00036999	559.8320369268539	47.063	0.77368	47.115	46.901	47.674	0.052574					71	28	3	0	0	0	0.0018995	2	10646	10646;10693		111.29	53.816	1	1974500			17127	1053	9651	9652	21682;21683	21682					0.09542577919796713
IYNQVKQII	9	Unmodified	_IYNQVKQII_					0	0	0		nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1	nc|ENSG00000075711|Q12959-8|DLG1	nc|ENSG00000075711|Q12959-8|DLG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.8320922851562	2	559.832049	1117.64954	0.88116	0.0004933	-0.30299	-0.00016962	0.57817	0.00032368	559.8316721895353	47.119	0.79372	47.173	46.908	47.702	0.054371					69	28	4	0	0	0	0.00094673	2	10655	10655;10707		123.45	56.107	1	2352500			17128	1053	9651	9652	21684;21685	21684					0.09542577919796713
IYNQVNVVL	9	Unmodified	_IYNQVNVVL_					0	0	0		ENST00000523288.5_1_8:130864395-130891707:-|nuORF;ENSG00000153310|ENST00000694912|CYRIB	ENST00000523288.5_1_8:130864395-130891707:-|nuORF	ENST00000523288.5_1_8:130864395-130891707:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3034057617188	2	531.303124	1060.5917	0.58587	0.00031127	-0.61793	-0.00032831	-0.032056	-1.7031E-05	531.3030400274168	63.444	1.5529	63.444	62.93	64.483	0					143	56	4	0	0	0	0.0017972	2	15727	15727;15770		112.59	60.325	1	3843100			17129	5073	9652	9653	21686;21687	21686					0.06382315994369492
IYNQVNVVL	9	Unmodified	_IYNQVNVVL_					0	0	0		ENST00000523288.5_1_8:130864395-130891707:-|nuORF;ENSG00000153310|ENST00000694912|CYRIB	ENST00000523288.5_1_8:130864395-130891707:-|nuORF	ENST00000523288.5_1_8:130864395-130891707:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.30322265625	2	531.303124	1060.5917	0.48887	0.00025974	-0.49443	-0.00026269	-0.005562	-2.9551E-06	531.3030716802131	63.331	1.3271	63.427	63.066	64.393	0.095722					126	47	4	0	0	0	0.00077644	3	15674	15626;15674;15718		125.62	70.851	1	4120800			17130	5073	9652	9653	21688;21689;21690	21689					0.06382315994369492
IYNQVNVVL	9	Unmodified	_IYNQVNVVL_					0	0	0		ENST00000523288.5_1_8:130864395-130891707:-|nuORF;ENSG00000153310|ENST00000694912|CYRIB	ENST00000523288.5_1_8:130864395-130891707:-|nuORF	ENST00000523288.5_1_8:130864395-130891707:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3033447265625	2	531.303124	1060.5917	0.61052	0.00032437	-0.68207	-0.00036238	-0.071549	-3.8014E-05	531.3029835969351	63.455	1.4725	63.447	63.051	64.524	-0.0085564					143	53	4	0	0	0	0.00268	2	15699	15699;15747		104.8	43.442	1	3715600			17131	5073	9652	9653	21691;21692	21691					0.06382315994369492
IYNREEIF	8	Unmodified	_IYNREEIF_					0	0	0			REV__ENST00000469765.5_1_1:32745435-32751314:+|nuORF	REV__ENST00000469765.5_1_1:32745435-32751314:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2594604492188	2	542.277106	1082.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.611	1	56.689	56.189	57.189	0.078674								0	0	0	0.23984	1	13601	13601		38.151	5.8457	1		+		17132	18223	9653	9654	21693	21693					0.0016915258061089844
IYNRKSVLL	9	Unmodified	_IYNRKSVLL_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3408203125	2	553.340041	1104.66553	0.91115	0.00050417	0.60707	0.00033592	1.5182	0.00084009	553.3403796067562	33.705	0.6076	33.771	33.596	34.203	0.06636					43	21	3	0	0	0	0.016723	1	6590	6590		69.105	40.023	1	360040			17133	62	9654	9655	21694	21694					0.11738284156717782
IYNRKSVLL	9	Unmodified	_IYNRKSVLL_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3406372070312	2	553.340041	1104.66553	0.16146	8.934E-05	1.1291	0.00062478	1.2906	0.00071412	553.3406581008281	33.746	0.46964	33.813	33.577	34.047	0.066704					37	16	3	0	0	0	0.14786	1	6588	6588		31.268	17.362	1	319930			17134	62	9654	9655	21695	21695					0.11738284156717782
IYNRKSVLL	9	Unmodified	_IYNRKSVLL_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.340041	1104.66553	0.70407	0.00038959	0.42142	0.00023319	1.1255	0.00062278	553.3404301662057	33.913	0.60288	33.913	33.674	34.277	0	0.080235	-0.00027383	NaN	69.105	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335940			17135	62	9654	9655							0.11738284156717782
IYNVLKTF	8	Unmodified	_IYNVLKTF_					0	0	0		nc|ENSG00000068971|Q15173-2|PPP2R5B;ENSG00000068971|ENST00000164133|PPP2R5B	nc|ENSG00000068971|Q15173-2|PPP2R5B	nc|ENSG00000068971|Q15173-2|PPP2R5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7691650390625	2	499.289485	996.564418	0.52968	0.00026446	-2.6262	-0.0013112	-2.0965	-0.0010468	499.78927452728004	64.643	0.67001	64.736	64.42	65.09	0.09288					52	24	3	0	0	0	0.33995	1	16149	16149		15.768	0	1	384740			17136	895	9655	9656	21696	21696					0.06599832454003263
IYNVLKTF	8	Unmodified	_IYNVLKTF_					0	0	0		nc|ENSG00000068971|Q15173-2|PPP2R5B;ENSG00000068971|ENST00000164133|PPP2R5B	nc|ENSG00000068971|Q15173-2|PPP2R5B	nc|ENSG00000068971|Q15173-2|PPP2R5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.76910400390625	2	499.289485	996.564418	0.43409	0.00021674	-2.0915	-0.0010443	-1.6574	-0.00082753	499.78950927568553	64.748	0.58082	64.739	64.443	65.024	-0.0095291					44	20	3	0	0	0	0.33995	1	16174	16174		15.768	0	1	357970			17137	895	9655	9656	21697	21697					0.06599832454003263
IYNVQNASI	9	Unmodified	_IYNVQNASI_					0	0	0		ENST00000295087.12_1_2:152658001-152658127:-|nuORF	ENST00000295087.12_1_2:152658001-152658127:-|nuORF	ENST00000295087.12_1_2:152658001-152658127:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.74285888671875	2	511.269281	1020.52401	0.31223	0.00015963	-0.67145	-0.00034329	-0.35922	-0.00018366	511.26902411483417	47.177	0.66506	47.229	47.062	47.727	0.052574					31	24	2	0	0	0	0.21389	1	10695	10695		25.399	10.561	1	149140			17138	9169	9656	9657	21698	21698					0.0145686606357458
IYNYPEQLF	9	Unmodified	_IYNYPEQLF_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.792236328125	2	593.792589	1185.57063	0.19783	0.00011747	-0.46201	-0.00027434	-0.26418	-0.00015687	593.792328410705	73.76	0.69058	73.76	73.468	74.158	0					65	23	4	0	0	0	0.0079761	2	18843	18843;18898		82.529	57.94	1	943560			17139	6048	9657	9658	21699;21700	21699					-0.0147369410515239
IYNYPEQLF	9	Unmodified	_IYNYPEQLF_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.7925415039062	2	593.792589	1185.57063	0.35359	0.00020996	-0.565	-0.00033549	-0.21141	-0.00012554	593.7921528283034	73.742	0.68143	73.794	73.494	74.176	0.052361					57	23	4	0	0	0	0.0045319	1	18835	18835		90.135	61.053	1	994100			17140	6048	9657	9658	21701	21701					-0.0147369410515239
IYNYPEQLF	9	Unmodified	_IYNYPEQLF_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7924194335938	2	593.792589	1185.57063	0.3177	0.00018865	-0.61973	-0.00036799	-0.30203	-0.00017935	593.7922381102114	73.816	0.79337	73.785	73.448	74.241	-0.030655					64	28	3	0	0	0	0.0079761	1	18851	18851		82.529	57.13	1	974840			17141	6048	9657	9658	21702	21702					-0.0147369410515239
IYPALPQPNF	10	Unmodified	_IYPALPQPNF_					0	0	0		ENST00000487422.1_1_X:154753982-154774937:-|nuORF;nc|ENSG00000185973|Q9NVH6-4|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;nc|ENSG00000185973|Q9NVH6-2|TMLHE;nc|ENSG00000185973|Q9NVH6-5|TMLHE;nc|ENSG00000185973|Q9NVH6-3|TMLHE;ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE	ENST00000487422.1_1_X:154753982-154774937:-|nuORF	ENST00000487422.1_1_X:154753982-154774937:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.310791015625	2	580.310949	1158.60735	0.069435	4.0294E-05	0.56229	0.0003263	0.63173	0.0003666	580.3111456244211	73.552	0.70121	73.552	73.218	73.92	0					52	24	3	0	0	0	0.080806	2	18774	18774;18823		52.268	34.086	1	355400			17142	11119	9658	9659	21703;21704	21703					0.034386025114145014
IYPALPQPNF	10	Unmodified	_IYPALPQPNF_					0	0	0		ENST00000487422.1_1_X:154753982-154774937:-|nuORF;nc|ENSG00000185973|Q9NVH6-4|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;nc|ENSG00000185973|Q9NVH6-2|TMLHE;nc|ENSG00000185973|Q9NVH6-5|TMLHE;nc|ENSG00000185973|Q9NVH6-3|TMLHE;ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE	ENST00000487422.1_1_X:154753982-154774937:-|nuORF	ENST00000487422.1_1_X:154753982-154774937:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3113403320312	2	580.310949	1158.60735	0.18629	0.0001081	0.67665	0.00039267	0.86293	0.00050077	580.3112933295461	73.561	0.7795	73.615	73.172	73.951	0.053833					57	27	3	0	0	0	0.091471	2	18827	18772;18827		49.933	28.186	1	329590			17143	11119	9658	9659	21705;21706	21706					0.034386025114145014
IYPALPQPNF	10	Unmodified	_IYPALPQPNF_					0	0	0		ENST00000487422.1_1_X:154753982-154774937:-|nuORF;nc|ENSG00000185973|Q9NVH6-4|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;nc|ENSG00000185973|Q9NVH6-2|TMLHE;nc|ENSG00000185973|Q9NVH6-5|TMLHE;nc|ENSG00000185973|Q9NVH6-3|TMLHE;ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE	ENST00000487422.1_1_X:154753982-154774937:-|nuORF	ENST00000487422.1_1_X:154753982-154774937:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3108520507812	2	580.310949	1158.60735	0.24753	0.00014364	0.48016	0.00027864	0.72769	0.00042229	580.3109875747049	73.665	0.61768	73.634	73.237	73.855	-0.030655					51	22	3	0	0	0	0.091471	2	18826	18780;18826		49.933	32.991	1	418610			17144	11119	9658	9659	21707;21708	21708					0.034386025114145014
IYPDSFTVL	9	Unmodified	_IYPDSFTVL_					0	0	0		ENSG00000111832|ENST00000466444|RWDD1	ENSG00000111832|ENST00000466444|RWDD1	ENSG00000111832|ENST00000466444|RWDD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.776611328125	2	527.776408	1053.53826	0.40756	0.0002151	0.16442	8.6779E-05	0.57198	0.00030188	527.7763286668701	76.307	2.3495	76.307	75.794	78.144	0					243	86	5	0	0	0	4.4046E-07	7	19652	19602;19652;19700;19743;19786;19844;19952		162.95	116.93	1	6077300			17145	2392	9659	9660	21709;21710;21711;21712;21713;21714;21715	21710					0.01363518491848481
IYPDSFTVL	9	Unmodified	_IYPDSFTVL_					0	0	0		ENSG00000111832|ENST00000466444|RWDD1	ENSG00000111832|ENST00000466444|RWDD1	ENSG00000111832|ENST00000466444|RWDD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7765502929688	2	527.776408	1053.53826	0.29445	0.0001554	-0.050942	-2.6886E-05	0.2435	0.00012851	527.7763871324938	76.237	2.2972	76.29	75.756	78.053	0.053413					133	82	2	0	0	0	4.4046E-07	6	19626	19575;19626;19672;19723;19774;19850		162.95	116.03	1	5573400			17146	2392	9659	9660	21716;21717;21718;21719;21720;21721	21717					0.01363518491848481
IYPDSFTVL	9	Unmodified	_IYPDSFTVL_					0	0	0		ENSG00000111832|ENST00000466444|RWDD1	ENSG00000111832|ENST00000466444|RWDD1	ENSG00000111832|ENST00000466444|RWDD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7764892578125	2	527.776408	1053.53826	0.58533	0.00030892	0.025687	1.3557E-05	0.61101	0.00032248	527.776260567958	76.386	2.0663	76.355	75.803	77.869	-0.031487					227	75	5	0	0	0	2.3311E-08	7	19644	19597;19644;19694;19738;19784;19841;19900		179.23	125.65	1	5941500			17147	2392	9659	9660	21722;21723;21724;21725;21726;21727;21728	21723					0.01363518491848481
IYPELQIERF	10	Unmodified	_IYPELQIERF_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.5714416503906	3	436.571322	1306.69214	0.24113	0.00010527	-0.38733	-0.0001691	-0.1462	-6.3827E-05	436.5712251913112	65.862	0.63779	65.862	65.545	66.183	0					49	22	3	0	0	0	0.14043	1	16459	16459		39.923	27.067	1	534190			17148	1088	9660	9661	21729	21729					0.051059282573760356
IYPELQIERF	10	Unmodified	_IYPELQIERF_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.5712585449219	3	436.571322	1306.69214	0.15584	6.8034E-05	-0.10822	-4.7246E-05	0.047618	2.0789E-05	436.57125461857856	65.833	0.63924	65.822	65.53	66.169	-0.011337					52	22	4	0	0	0	0.1623	1	16435	16435		37.251	28.275	1	536480			17149	1088	9660	9661	21730	21730					0.051059282573760356
IYPEVVHMF	9	Oxidation (M)	_IYPEVVHM(Oxidation (M))F_		IYPEVVHM(1)F		IYPEVVHM(110)F	0	0	1		nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000553730.5_1_14:102276279-102348623:+|nuORF	nc|ENSG00000078304|Q13362-2|PPP2R5C	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7648315429688	2	575.78371	1149.55287	0.33136	0.00019079	-0.1327	-7.6404E-05	0.19866	0.00011439	575.7836587506356	53.15	1.7194	53.15	52.743	54.462	0					189	63	5	0	0	0	0.0020518	1	12525	12525		109.63	81.142	1	5628300			17150	1109	9661	9662	21731	21731		135			-0.0159273263166142
IYPEVVHMF	9	Oxidation (M)	_IYPEVVHM(Oxidation (M))F_		IYPEVVHM(1)F		IYPEVVHM(97)F	0	0	1		nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000553730.5_1_14:102276279-102348623:+|nuORF	nc|ENSG00000078304|Q13362-2|PPP2R5C	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7833862304688	2	575.78371	1149.55287	0.52456	0.00030203	-0.24339	-0.00014014	0.28117	0.00016189	575.7835666299336	53.13	1.6565	53.186	52.746	54.403	0.056255					180	61	5	0	0	0	0.0055862	1	12520	12520		97.075	68.588	1	5335200			17151	1109	9661	9662	21732	21732		135			-0.0159273263166142
IYPEVVHMF	9	Oxidation (M)	_IYPEVVHM(Oxidation (M))F_		IYPEVVHM(1)F		IYPEVVHM(97)F	0	0	1		nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000553730.5_1_14:102276279-102348623:+|nuORF	nc|ENSG00000078304|Q13362-2|PPP2R5C	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7832641601562	2	575.78371	1149.55287	0.31916	0.00018377	-0.21924	-0.00012623	0.09992	5.7533E-05	575.7835450632008	53.228	2.0076	53.218	52.654	54.662	-0.0096054					202	73	4	0	0	0	0.0055862	1	12580	12580		97.075	68.588	1	5630700			17152	1109	9661	9662	21733	21733		135			-0.0159273263166142
IYPGAFVDL	9	Unmodified	_IYPGAFVDL_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7658996582031	2	497.765843	993.517133	0.81014	0.00040326	-0.10774	-5.3627E-05	0.7024	0.00034963	497.7657461002868	77.914	0.66898	77.914	77.58	78.249	0					40	24	2	0	0	0	0.072844	1	20163	20163		44.407	19.733	1	347890			17153	451	9662	9663	21734	21734					0.020115531830015243
IYPGAFVDL	9	Unmodified	_IYPGAFVDL_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.76605224609375	2	497.765843	993.517133	0.75123	0.00037394	-0.082966	-4.1297E-05	0.66827	0.00033264	497.7657867975292	77.757	0.76274	77.813	77.571	78.333	0.05542					45	27	2	0	0	0	0.11517	1	20145	20145		36.044	17.909	1	251610			17154	451	9662	9663	21735	21735					0.020115531830015243
IYPGAFVDL	9	Unmodified	_IYPGAFVDL_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.765843	993.517133	0.75123	0.00037394	-0.082966	-4.1297E-05	0.66827	0.00033264	497.7657867975292	77.757	0.76274	77.813	77.571	78.333	0.05542	-0.050569	1.4333E-05	NaN	44.407	45	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251610			17155	451	9662	9663							0.020115531830015243
IYPGCKKPG	9	Unmodified	_IYPGCKKPG_					0	0	0			REV__ENSG00000125629|ENST00000245787|INSIG2	REV__ENSG00000125629|ENST00000245787|INSIG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7977600097656	2	481.760038	961.505523	0.057207	2.756E-05	1.5535	0.00074841	1.6107	0.00077596	481.7607346573854	22.314	0.45848	22.265	22.038	22.496	-0.049377					22	15	2	0	0	0	0.25622	1	3045	3045		7.2892	1.5288	1	89906	+		17156	15271	9663	9664	21736	21736					0.023230328880231355
IYPGCKKPG	9	Unmodified	_IYPGCKKPG_					0	0	0			REV__ENSG00000125629|ENST00000245787|INSIG2	REV__ENSG00000125629|ENST00000245787|INSIG2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	481.760038	961.505523	0.075693	3.6466E-05	1.5101	0.00072752	1.5858	0.00076398	481.76069649764884	22.287	0.28647	22.287	22.133	22.42	0	0.011152	-2.633E-05	NaN	7.2892	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75907	+		17157	15271	9663	9664							0.023230328880231355
IYPGRVTGF	9	Unmodified	_IYPGRVTGF_					0	0	0			REV__nc|ENSG00000183914|Q9P225-3|DNAH2;REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2771911621094	2	505.276909	1008.53927	0.61819	0.00031236	-0.4972	-0.00025122	0.12099	6.1135E-05	505.2765236500528	78.14	0.97575	78.198	77.682	78.657	0.058151					69	35	3	0	0	0	0.23783	1	20221	20221		18.135	1.0221	1	175690	+		17158	18293;23133	9664	9665	21737	21737					0.03533777651421133
IYPGRVTGF	9	Unmodified	_IYPGRVTGF_					0	0	0			REV__nc|ENSG00000183914|Q9P225-3|DNAH2;REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	505.276909	1008.53927	0.70266	0.00035504	-0.52822	-0.0002669	0.17443	8.8136E-05	505.2764566105054	78.068	1.3375	78.068	77.149	78.486	0	-0.06514	-1.655E-05	NaN	18.135	87	49	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196350	+		17159	18293;23133	9664	9665							0.03533777651421133
IYPHGLVLL	9	Unmodified	_IYPHGLVLL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.8131713867188	2	512.813128	1023.6117	0.17964	9.2124E-05	-0.16986	-8.7109E-05	0.0097796	5.0151E-06	512.8131062144835	65.203	3.19	65.203	64.858	68.048	0					245	113	4	0	0	0	0.017826	5	16311	16219;16311;16363;16424;16546		67.413	30.947	1	6429400			17160	1749	9665	9666	21738;21739;21740;21741;21742	21739					0.10084111724984268
IYPHGLVLL	9	Unmodified	_IYPHGLVLL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2899169921875	2	512.813128	1023.6117	0.37111	0.00019031	-0.32401	-0.00016616	0.047105	2.4156E-05	512.8130257740062	68.667	1.4632	68.667	68.048	69.511	0					72	53	2	0	0	0	0.15605	1	17329	17329		36.466	15.595	1	458660			17161	1749	9665	9666	21743	21743					0.10084111724984268
IYPHGLVLL	9	Unmodified	_IYPHGLVLL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.8133544921875	2	512.813128	1023.6117	-0.015762	-8.0831E-06	-0.0043112	-2.2109E-06	-0.020073	-1.0294E-05	512.8132082153813	65.121	3.0892	65.21	64.818	67.907	0.088882					272	111	4	0	0	0	0.017826	4	16225	16225;16267;16320;16489		67.413	36.776	1	7046400			17162	1749	9665	9666	21744;21745;21746;21747	21744					0.10084111724984268
IYPHGLVLL	9	Unmodified	_IYPHGLVLL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.289794921875	2	512.813128	1023.6117	0.25316	0.00012982	-0.095831	-4.9144E-05	0.15732	8.0678E-05	512.8131700009333	68.618	0.7963	68.69	68.304	69.1	0.071938					52	29	2	0	0	0	0.19319	1	17288	17288		28.173	7.302	1	395550			17163	1749	9665	9666	21748	21748					0.10084111724984268
IYPHGLVLL	9	Unmodified	_IYPHGLVLL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.8133544921875	2	512.813128	1023.6117	0.044236	2.2685E-05	-0.061629	-3.1604E-05	-0.017393	-8.9196E-06	512.8131619055205	65.253	3.6036	65.241	64.833	68.437	-0.011337					266	129	4	0	0	0	0.017826	5	16216	16216;16266;16311;16361;16409		67.413	30.947	1	7130400			17164	1749	9665	9666	21749;21750;21751;21752;21753	21749					0.10084111724984268
IYPHGLVLL	9	Unmodified	_IYPHGLVLL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2677612304688	2	512.813128	1023.6117	0.262	0.00013436	-0.20347	-0.00010434	0.058524	3.0012E-05	512.8131230427857	68.63	0.95192	68.611	68.429	69.381	-0.019157					59	33	2	0	0	0	0.15605	1	17330	17330		36.466	10.125	1	535530			17165	1749	9665	9666	21754	21754					0.10084111724984268
IYPHGLVLL	9	Unmodified	_IYPHGLVLL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7045288085938	2	512.813128	1023.6117	0.22414	0.00011494	0.32314	0.00016571	0.54728	0.00028065	512.8132318934335	70.011	0.49825	69.989	69.858	70.356	-0.022087					26	17	2	0	0	0	0.22431	1	17739	17739		20.871	1.4322	1	114240			17166	1749	9665	9666	21755	21755					0.10084111724984268
IYPITSFQL	9	Unmodified	_IYPITSFQL_					0	0	0		nc|ENSG00000139915|Q7Z553-2|MDGA2;nc|ENSG00000139915|Q7Z553|MDGA2;ENSG00000139915|ENST00000399232|MDGA2	nc|ENSG00000139915|Q7Z553-2|MDGA2	nc|ENSG00000139915|Q7Z553-2|MDGA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8425903320312	2	541.30005	1080.58555	0.57298	0.00031015	-0.095819	-5.1867E-05	0.47716	0.00025829	541.2998037204501	72.504	1.4087	72.504	71.612	73.02	0					69	51	2	0	0	0	0.21905	1	18520	18520		11.64	0	1	196450			17167	4271	9666	9667	21756	21756					0.04847797762840855
IYPKGKKEGTF	11	Unmodified	_IYPKGKKEGTF_					0	0	0			REV__ENST00000463543.5_1_1:151143496-151146942:-|nuORF	REV__ENST00000463543.5_1_1:151143496-151146942:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.2120056152344	3	423.239684	1266.69722	0.21904	9.2705E-05	1.5578	0.00065933	1.7768	0.00075203	423.5746146856801	54.202	0.90064	54.202	53.884	54.785	0					56	32	2	0	0	0	0.32798	1	12988	12988		6.2344	0.45093	1	428130	+		17168	21253	9667	9668	21757	21757					0.07454232119994231
IYPKLLDNF	9	Unmodified	_IYPKLLDNF_					0	0	0		nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-3|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1;ENST00000470265.1_1_6:143486230-143507836:+|nuORF	nc|ENSG00000146416|Q9NVV5-6|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.8143920898438	2	561.813325	1121.6121	0.15307	8.5996E-05	1.2917	0.00072571	1.4448	0.00081171	561.814093529883	64.958	0.70129	64.958	64.591	65.293	0					79	25	4	0	0	0	0.24471	1	16163	16163		8.1555	2.4237	1	2027700			17169	4712	9668	9669	21758	21758					0.05615486654187407
IYPKLLDNF	9	Unmodified	_IYPKLLDNF_					0	0	0		nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-3|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1;ENST00000470265.1_1_6:143486230-143507836:+|nuORF	nc|ENSG00000146416|Q9NVV5-6|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.8145751953125	2	561.813325	1121.6121	0.35692	0.00020052	1.2853	0.0007221	1.6422	0.00092262	561.8141309605218	64.847	0.69411	64.939	64.633	65.327	0.09288					69	25	4	0	0	0	0.073988	2	16135	16135;16182		43.982	13.345	1	2194900			17170	4712	9668	9669	21759;21760	21759					0.05615486654187407
IYPKLLDNF	9	Unmodified	_IYPKLLDNF_					0	0	0		nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-3|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1;ENST00000470265.1_1_6:143486230-143507836:+|nuORF	nc|ENSG00000146416|Q9NVV5-6|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.30322265625	2	561.813325	1121.6121	0.046611	2.6187E-05	1.2905	0.00072502	1.3371	0.00075121	561.813773505899	64.962	0.65555	64.95	64.632	65.288	-0.011337					70	23	4	0	0	0	0.15943	1	16186	16186		39.95	11.463	1	2073500			17171	4712	9668	9669	21761	21761					0.05615486654187407
IYPLIKLN	8	Unmodified	_IYPLIKLN_					0	0	0		ENST00000547879.5_1_14:75276485-75276660:+|nuORF	ENST00000547879.5_1_14:75276485-75276660:+|nuORF	ENST00000547879.5_1_14:75276485-75276660:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7898254394531	2	487.307678	972.600803	0.36631	0.0001785	-2.3162	-0.0011287	-1.9499	-0.00095019	487.3063607217254	56.87	0.29891	56.87	56.713	57.012	0					16	10	2	0	0	0	0.33995	1	13696	13696		2.5775	0	1	204690			17172	11774	9669	9670	21762	21762					0.11340709350702127
IYPLLGATL	9	Unmodified	_IYPLLGATL_					0	0	0		ENSG00000127804|ENST00000263092|METTL16;ENST00000571298.5_1_17:2367609-2378577:-|nuORF;nc|ENSG00000127804|Q86W50-2|METTL16	ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7916564941406	2	480.791861	959.569169	0.16939	8.1443E-05	-0.43561	-0.00020944	-0.26621	-0.00012799	480.79166514711375	80.309	0.82446	80.309	79.926	80.751	0					57	30	3	0	0	0	0.0034367	2	20909	20856;20909		98.807	66.69	1	290650			17173	3335	9670	9671	21763;21764	21764					0.087767165967648
IYPLLGATL	9	Unmodified	_IYPLLGATL_					0	0	0		ENSG00000127804|ENST00000263092|METTL16;ENST00000571298.5_1_17:2367609-2378577:-|nuORF;nc|ENSG00000127804|Q86W50-2|METTL16	ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.79180908203125	2	480.791861	959.569169	0.16493	7.9295E-05	-0.35066	-0.00016859	-0.18573	-8.9299E-05	480.7916436453355	80.263	0.90427	80.328	79.979	80.883	0.065094					62	34	3	0	0	0	0.0040585	2	20824	20824;20895		93.883	61.766	1	262360			17174	3335	9670	9671	21765;21766	21765					0.087767165967648
IYPLLGATL	9	Unmodified	_IYPLLGATL_					0	0	0		ENSG00000127804|ENST00000263092|METTL16;ENST00000571298.5_1_17:2367609-2378577:-|nuORF;nc|ENSG00000127804|Q86W50-2|METTL16	ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.79156494140625	2	480.791861	959.569169	0.2704	0.00013001	-0.6679	-0.00032112	-0.3975	-0.00019112	480.7915417216564	80.441	0.70315	80.414	79.949	80.652	-0.026825					53	24	3	0	0	0	0.0040585	1	20856	20856		93.883	61.766	1	316840			17175	3335	9670	9671	21767	21767					0.087767165967648
IYPLLIFSF	9	Unmodified	_IYPLLIFSF_					0	0	0		ENST00000395491.6_1_17:21218170-21218272:+|nuORF	ENST00000395491.6_1_17:21218170-21218272:+|nuORF	ENST00000395491.6_1_17:21218170-21218272:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.8212890625	2	556.823161	1111.63177	0.31507	0.00017544	-3.3079	-0.0018419	-2.9928	-0.0016665	556.8208635407979	82.1	0.75632	82.076	81.715	82.471	-0.02404					49	29	3	0	0	0	0.25291	1	21395	21395		9.3474	2.0582	1	398530			17176	10091	9671	9672	21768	21768					0.08041862664936161
IYPLPRCDGSL	11	Unmodified	_IYPLPRCDGSL_					0	0	0			REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2349853515625	3	411.881391	1232.62234	0.095997	3.9539E-05	2.826	0.001164	2.922	0.0012035	412.2181372419493	38.106	0.14426	38.204	38.15	38.294	0.097527					5	4	2	0	0	0	0.3259	1	7912	7912		7.4771	1.2852	1	61829	+		17177	13772	9672	9673	21769	21769					0.01533726317120454
IYPMNPEI	8	Unmodified	_IYPMNPEI_					0	0	0		ENST00000511730.2_1_5:40716249-40756023:-|nuORF;ENSG00000113638|ENST00000337702|TTC33	ENST00000511730.2_1_5:40716249-40756023:-|nuORF	ENST00000511730.2_1_5:40716249-40756023:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.74420166015625	2	488.744053	975.473554	0.3309	0.00016173	0.17067	8.3413E-05	0.50157	0.00024514	488.7440457439307	71.305	1.0378	71.305	70.512	71.55	0					43	36	2	0	0	0	0.3671	1	18143	18143		23.148	9.6405	1	413900			17178	2518	9673	9674	21770	21770					-0.01516379585791583
IYPMNPEI	8	Unmodified	_IYPMNPEI_					0	0	0		ENST00000511730.2_1_5:40716249-40756023:-|nuORF;ENSG00000113638|ENST00000337702|TTC33	ENST00000511730.2_1_5:40716249-40756023:-|nuORF	ENST00000511730.2_1_5:40716249-40756023:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7442932128906	2	488.744053	975.473554	0.29488	0.00014412	0.56159	0.00027447	0.85646	0.00041859	488.7443264200296	71.288	0.48412	71.349	71.148	71.633	0.060783					24	16	2	0	0	0	0.41758	1	18114	18114		16.942	1.0951	1	399330			17179	2518	9673	9674	21771	21771					-0.01516379585791583
IYPMNPEI	8	Unmodified	_IYPMNPEI_					0	0	0		ENST00000511730.2_1_5:40716249-40756023:-|nuORF;ENSG00000113638|ENST00000337702|TTC33	ENST00000511730.2_1_5:40716249-40756023:-|nuORF	ENST00000511730.2_1_5:40716249-40756023:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7448425292969	2	488.744053	975.473554	0.40797	0.00019939	0.26839	0.00013117	0.67635	0.00033056	488.7441789305372	71.274	0.96526	71.249	70.64	71.605	-0.024864					58	34	2	0	0	0	0.41758	1	18144	18144		16.942	1.0951	1	348750			17180	2518	9673	9674	21772	21772					-0.01516379585791583
IYPMNPEI	8	Unmodified	_IYPMNPEI_					0	0	0		ENST00000511730.2_1_5:40716249-40756023:-|nuORF;ENSG00000113638|ENST00000337702|TTC33	ENST00000511730.2_1_5:40716249-40756023:-|nuORF	ENST00000511730.2_1_5:40716249-40756023:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	488.744053	975.473554	0.29488	0.00014412	0.56159	0.00027447	0.85646	0.00041859	488.7443264200296	71.288	0.48412	71.349	71.148	71.633	0.060783	0.047656	0.00026949	NaN	23.148	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399330			17181	2518	9673	9674							-0.01516379585791583
IYPMNPEI	8	Unmodified	_IYPMNPEI_					0	0	0		ENST00000511730.2_1_5:40716249-40756023:-|nuORF;ENSG00000113638|ENST00000337702|TTC33	ENST00000511730.2_1_5:40716249-40756023:-|nuORF	ENST00000511730.2_1_5:40716249-40756023:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	488.744053	975.473554	0.40797	0.00019939	0.26839	0.00013117	0.67635	0.00033056	488.7441789305372	71.274	0.96526	71.249	70.64	71.605	-0.024864	-0.05194	-1.7116E-05	NaN	23.148	58	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348750			17182	2518	9673	9674							-0.01516379585791583
IYPPINVLPSL	11	Unmodified	_IYPPINVLPSL_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.3637084960938	2	613.363182	1224.71181	0.35774	0.00021943	0.27638	0.00016952	0.63413	0.00038895	613.3633644441346	89.255	2.1691	89.255	88.349	90.518	0					351	137	5	0	0	0	1.2926E-08	5	23637	23462;23501;23547;23592;23637		139.78	94.082	1	3461600			17183	4763	9674	9675	21773;21774;21775;21776;21777	21777					0.10844304268152882
IYPPINVLPSL	11	Unmodified	_IYPPINVLPSL_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	613.3634643554688	2	613.363182	1224.71181	0.33721	0.00020684	0.33842	0.00020758	0.67564	0.00041441	613.3634348798751	89.179	1.9798	89.178	88.289	90.269	-0.00080872					341	121	5	0	0	0	1.2926E-08	5	23543	23453;23499;23543;23585;23621		139.78	97.942	1	3146400			17184	4763	9674	9675	21778;21779;21780;21781;21782	21780					0.10844304268152882
IYPQHLKSLAF	11	Unmodified	_IYPQHLKSLAF_					0	0	0		ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.75274658203125	3	439.583562	1315.72886	0.21405	9.4093E-05	0.2733	0.00012014	0.48735	0.00021423	439.91802141145206	49.515	0.57599	49.515	49.243	49.819	0					34	20	2	0	0	0	0.33056	1	11364	11364		8.7518	1.2747	1	366360			17185	2190	9675	9676	21783	21783					0.0836222487394025
IYPQVLHSL	9	Unmodified	_IYPQVLHSL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.3057250976562	2	535.305667	1068.59678	0.97577	0.00052233	-0.31881	-0.00017066	0.65696	0.00035167	535.3053254403517	55.967	1.6838	55.967	55.302	56.986	0					174	61	4	0	0	0	0.0024096	1	13363	13363		106.94	63.082	1	6739700			17186	6752	9676	9677	21784	21784					0.06522619856991696
IYPQVLHSL	9	Unmodified	_IYPQVLHSL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.3058471679688	2	535.305667	1068.59678	0.71413	0.00038228	0.10262	5.4932E-05	0.81675	0.00043721	535.3055811467182	55.891	1.7869	55.962	55.216	57.003	0.070889					180	66	4	0	0	0	9.2305E-05	2	13310	13310;13355		142.08	89.811	1	7240100			17187	6752	9676	9677	21785;21786	21785					0.06522619856991696
IYPQVLHSL	9	Unmodified	_IYPQVLHSL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.3056640625	2	535.305667	1068.59678	0.9172	0.00049098	-0.20631	-0.00011044	0.71089	0.00038054	535.305384706178	56.073	1.7998	56.054	55.29	57.09	-0.019081					163	65	4	0	0	0	0.00045155	1	13395	13395		129.77	85.914	1	5920000			17188	6752	9676	9677	21787	21787					0.06522619856991696
IYPSIFHVL	9	Unmodified	_IYPSIFHVL_					0	0	0		nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.810791015625	2	544.810585	1087.60662	0.54155	0.00029504	0.090036	4.9052E-05	0.63158	0.00034409	544.8105573297725	72.965	1.0976	72.965	72.506	73.604	0					105	39	4	0	0	0	0.0061338	2	18631	18584;18631		85.357	21.794	1	730530			17189	6959	9677	9678	21788;21789	21789					0.06631807862390815
IYPSIFHVL	9	Unmodified	_IYPSIFHVL_					0	0	0		nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.8107299804688	2	544.810585	1087.60662	0.58403	0.00031818	0.038359	2.0898E-05	0.62239	0.00033908	544.8105449348249	72.901	1.1792	72.955	72.484	73.663	0.053833					109	42	4	0	0	0	0.029841	1	18612	18612		60.39	22.238	1	829700			17190	6959	9677	9678	21790	21790					0.06631807862390815
IYPSIFHVL	9	Unmodified	_IYPSIFHVL_					0	0	0		nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.8103637695312	2	544.810585	1087.60662	0.73635	0.00040117	-0.077206	-4.2063E-05	0.65914	0.00035911	544.8104186409602	72.992	1.0417	72.963	72.516	73.557	-0.029305					95	37	3	0	0	0	0.015674	1	18591	18591		70.716	7.1527	1	725320			17191	6959	9677	9678	21791	21791					0.06631807862390815
IYPSNMQTM	9	2 Oxidation (M)	_IYPSNM(Oxidation (M))QTM(Oxidation (M))_		IYPSNM(1)QTM(1)		IYPSNM(51)QTM(51)	0	0	2		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.73876953125	2	558.738642	1115.46273	0.037068	2.0711E-05	-0.15782	-8.8178E-05	-0.12075	-6.7467E-05	558.7386765975765	27.682	0.8841	27.682	27.237	28.121	0					61	30	3	0	0	0	0.053988	1	4711	4711		51.415	32.158	1	160960			17192	2170	9678	9679	21792	21792		265;266			-0.09038150022388436
IYPSNMQTM	9	2 Oxidation (M)	_IYPSNM(Oxidation (M))QTM(Oxidation (M))_		IYPSNM(1)QTM(1)		IYPSNM(55)QTM(55)	0	0	2		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.7384033203125	2	558.738642	1115.46273	0.031284	1.748E-05	-0.027531	-1.5383E-05	0.0037533	2.0971E-06	558.7386134256827	27.627	0.9882	27.606	27.215	28.204	-0.021412					56	34	2	0	0	0	0.043711	1	4695	4695		55.235	39.387	1	147620			17193	2170	9678	9679	21793	21793		265;266			-0.09038150022388436
IYPSNMQTM	9	2 Oxidation (M)	_IYPSNM(Oxidation (M))QTM(Oxidation (M))_		IYPSNM(1)QTM(1)		IYPSNM(55)QTM(55)	0	0	2		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2708129882812	2	558.738642	1115.46273	-0.077904	-4.3528E-05	0.17023	9.5116E-05	0.092329	5.1588E-05	558.7386716196768	27.69	0.93792	27.678	27.266	28.203	-0.01156					54	32	2	0	0	0	0.081941	1	4678	4678		55.235	35.978	1	185920			17194	2170	9678	9679	21794	21794		265;266			-0.09038150022388436
IYPSPTGVLI	10	Unmodified	_IYPSPTGVLI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7635498046875	2	530.307875	1058.6012	0.619	0.00032826	-0.39756	-0.00021083	0.22144	0.00011743	530.3075410782582	72.658	0.67705	72.629	72.332	73.009	-0.029305					55	23	3	0	0	0	0.27337	1	18574	18574		29.082	18.258	1	721120			17195	6781	9679	9680	21795	21795					0.07424084279909948
IYPTAPPRF	9	Unmodified	_IYPTAPPRF_					0	0	0		nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2927856445312	2	531.292559	1060.57057	0.59965	0.00031859	-0.18016	-9.5715E-05	0.4195	0.00022288	531.2925646092891	48.802	0.9318	48.802	48.448	49.38	0					76	33	3	0	0	0	0.079752	3	11226	11182;11226;11281		41.84	25.992	1	2540100			17196	12734	9680	9681	21796;21797;21798	21797					0.042703506855104933
IYPTAPPRF	9	Unmodified	_IYPTAPPRF_					0	0	0		nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2928466796875	2	531.292559	1060.57057	0.48863	0.0002596	0.18829	0.00010004	0.67692	0.00035964	531.2926446981782	48.813	1.3831	48.858	48.442	49.825	0.044891					107	50	3	0	0	0	0.088443	4	11263	11164;11210;11263;11316		39.95	21.815	1	3163000			17197	12734	9680	9681	21799;21800;21801;21802	21801					0.042703506855104933
IYPTAPPRF	9	Unmodified	_IYPTAPPRF_					0	0	0		nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2930908203125	2	531.292559	1060.57057	0.43404	0.0002306	0.015558	8.2656E-06	0.4496	0.00023887	531.2926456822914	48.74	1.0473	48.772	48.447	49.494	0.032043					89	37	3	0	0	0	0.079752	4	11182	11135;11182;11230;11282		41.84	27.258	1	2502600			17198	12734	9680	9681	21803;21804;21805;21806	21804					0.042703506855104933
IYPTTYVQF	9	Unmodified	_IYPTTYVQF_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.2901611328125	2	566.289682	1130.56481	0.2353	0.00013325	0.10181	5.7656E-05	0.33711	0.0001909	566.2898502495572	70.035	1.3975	70.035	69.618	71.015	0					194	50	7	0	0	0	5.0285E-07	4	17730	17730;17780;17831;17883		160.52	108.25	1	10146000			17199	7144	9681	9682	21807;21808;21809;21810	21807					0.004752073831923553
IYPTTYVQF	9	Unmodified	_IYPTTYVQF_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.2899780273438	2	566.289682	1130.56481	0.32657	0.00018493	0.033502	1.8972E-05	0.36007	0.00020391	566.2898488196523	69.975	1.5055	70.042	69.487	70.993	0.066048					194	53	7	0	0	0	5.0285E-07	5	17714	17714;17755;17800;17846;17878		160.52	118.68	1	10012000			17200	7144	9681	9682	21811;21812;21813;21814;21815	21811					0.004752073831923553
IYPTTYVQF	9	Unmodified	_IYPTTYVQF_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.2901000976562	2	566.289682	1130.56481	0.26508	0.00015011	0.16046	9.0867E-05	0.42554	0.00024098	566.2899669964014	70.07	1.617	70.048	69.435	71.052	-0.022087					172	58	6	0	0	0	1.3869E-07	4	17732	17687;17732;17775;17819		174.73	116.05	1	10321000			17201	7144	9681	9682	21816;21817;21818;21819	21817					0.004752073831923553
IYPVDLGDKF	10	Unmodified	_IYPVDLGDKF_					0	0	0		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.8084106445312	2	583.808239	1165.60193	0.28345	0.00016548	0.14552	8.4954E-05	0.42896	0.00025043	583.8082478591293	62.01	1.8449	62.01	61.569	63.413	0					178	68	4	0	0	0	0.0044422	4	15234	15234;15282;15324;15373		94.909	64.272	1	5203300			17202	5750	9682	9683	21820;21821;21822;21823	21820					0.02574878928930957
IYPVDLGDKF	10	Unmodified	_IYPVDLGDKF_					0	0	0		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.808349609375	2	583.808239	1165.60193	0.0093011	5.43E-06	0.38232	0.0002232	0.39162	0.00022863	583.8083511190351	61.963	1.9835	62.06	61.408	63.391	0.096985					193	72	5	0	0	0	0.0044422	4	15246	15198;15246;15291;15341		94.909	69.509	1	4961500			17203	5750	9682	9683	21824;21825;21826;21827	21825					0.02574878928930957
IYPVDLGDKF	10	Unmodified	_IYPVDLGDKF_					0	0	0		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.8084716796875	2	583.808239	1165.60193	0.19942	0.00011642	0.172	0.00010041	0.37142	0.00021684	583.808264842406	61.998	1.9504	61.989	61.613	63.564	-0.0085526					192	71	5	0	0	0	0.0044422	3	15272	15224;15272;15319		94.909	69.509	1	5756500			17204	5750	9682	9683	21828;21829;21830	21829					0.02574878928930957
IYPVEELEEE	10	Unmodified	_IYPVEELEEE_					0	0	0		ENSG00000114446|ENST00000264538|IFT57;ENST00000465024.1_1_3:107932768-107941190:-|nuORF	ENSG00000114446|ENST00000264538|IFT57	ENSG00000114446|ENST00000264538|IFT57	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.2471008300781	3	417.199331	1248.57616	-0.0040124	-1.674E-06	0.70968	0.00029608	0.70567	0.0002944	417.19956744577814	28.356	0.46535	28.352	28.193	28.658	-0.0042572					25	16	2	0	0	0	0.318	1	5015	5015		3.8763	2.1341	1	145260			17205	2566	9683	9684	21831	21831					-0.03818060104003962
IYPVEELEEE	10	Unmodified	_IYPVEELEEE_					0	0	0		ENSG00000114446|ENST00000264538|IFT57;ENST00000465024.1_1_3:107932768-107941190:-|nuORF	ENSG00000114446|ENST00000264538|IFT57	ENSG00000114446|ENST00000264538|IFT57	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	417.199331	1248.57616	-0.30295	-0.00012639	0.80998	0.00033792	0.50702	0.00021153	417.19963257182695	28.331	0.45634	28.331	28.121	28.578	0	6.6538E-05	-0.00010236	NaN	3.8763	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137180			17206	2566	9683	9684							-0.03818060104003962
IYPVEELEEE	10	Unmodified	_IYPVEELEEE_					0	0	0		ENSG00000114446|ENST00000264538|IFT57;ENST00000465024.1_1_3:107932768-107941190:-|nuORF	ENSG00000114446|ENST00000264538|IFT57	ENSG00000114446|ENST00000264538|IFT57	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	417.199331	1248.57616	-0.14344	-5.9844E-05	1.1546	0.00048169	1.0111	0.00042184	417.53409641085096	28.309	0.4754	28.309	28.13	28.606	0.0004673	-0.02135	0.00032894	NaN	3.8763	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185600			17207	2566	9683	9684							-0.03818060104003962
IYPVKYTQTF	10	Unmodified	_IYPVKYTQTF_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.3372192382812	2	630.337164	1258.65977	0.47089	0.00029682	0.045182	2.848E-05	0.51607	0.0003253	630.3369742077992	51.428	0.42577	51.428	51.222	51.648	0					39	15	3	0	0	0	0.01159	2	12002	12002;12053		80.896	51.814	1	1188000			17208	2433	9684	9685	21832;21833	21832					0.04079140854355501
IYPVKYTQTF	10	Unmodified	_IYPVKYTQTF_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.3372192382812	2	630.337164	1258.65977	0.21962	0.00013843	0.25225	0.000159	0.47187	0.00029743	630.3371281563892	51.403	0.45327	51.449	51.245	51.699	0.046574					37	16	3	0	0	0	0.0053513	2	12024	11978;12024		89.609	66.872	1	1189100			17209	2433	9684	9685	21834;21835	21835					0.04079140854355501
IYPVKYTQTF	10	Unmodified	_IYPVKYTQTF_					0	0	0		ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	ENSG00000112378|ENST00000421351|PERP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.83935546875	2	630.337164	1258.65977	0.35457	0.0002235	0.23384	0.0001474	0.58841	0.0003709	630.3369922064489	51.562	0.72137	51.571	51.297	52.018	0.0095634					49	26	3	0	0	0	0.0053513	2	12023	12023;12075		89.609	65.588	1	1166300			17210	2433	9684	9685	21836;21837	21836					0.04079140854355501
IYPVNAISF	9	Unmodified	_IYPVNAISF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.279296875	2	512.279118	1022.54368	0.61664	0.00031589	-0.25356	-0.00012989	0.36308	0.000186	512.278842290166	74.51	1.2678	74.51	74.127	75.395	0					95	44	3	0	0	0	4.3382E-05	2	19123	19123;19173		149.99	41.998	1	2915800			17211	5131	9685	9686	21838;21839	21838					0.03331242074318652
IYPVNAISF	9	Unmodified	_IYPVNAISF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2791137695312	2	512.279118	1022.54368	0.23589	0.00012084	0.034233	1.7537E-05	0.27013	0.00013838	512.2789942487595	74.457	1.4814	74.51	73.894	75.375	0.052361					106	52	3	0	0	0	6.7091E-11	1	19111	19111		181.33	60.877	1	3141700			17212	5131	9685	9686	21840	21840					0.03331242074318652
IYPVNAISF	9	Unmodified	_IYPVNAISF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2794189453125	2	512.279118	1022.54368	0.4115	0.0002108	-0.006945	-3.5578E-06	0.40456	0.00020725	512.2789924482569	74.591	1.3717	74.56	74.154	75.526	-0.030655					106	49	3	0	0	0	3.5085E-07	1	19122	19122		166.45	58.451	1	3168400			17213	5131	9685	9686	21841	21841					0.03331242074318652
IYPYIRTLL	9	Unmodified	_IYPYIRTLL_					0	0	0		nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;ENST00000492449.5_1_3:184603882-184769810:+|nuORF	nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.7338256835938	2	576.344792	1150.67503	0.26742	0.00015413	-0.78507	-0.00045247	-0.51765	-0.00029835	576.3444378343256	68.425	1.0447	68.425	68.022	69.067	0					72	38	2	0	0	0	0.16853	1	17289	17289		38.176	7.539	1	697210			17214	5267	9686	9687	21842	21842					0.1057205244223951
IYPYIRTLL	9	Unmodified	_IYPYIRTLL_					0	0	0		nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;ENST00000492449.5_1_3:184603882-184769810:+|nuORF	nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.7337646484375	2	576.344792	1150.67503	0.298	0.00017175	-0.67465	-0.00038883	-0.37665	-0.00021708	576.3443687883056	68.413	1.167	68.485	68.016	69.183	0.071938					97	42	3	0	0	0	0.1558	1	17271	17271		41.956	7.5538	1	638400			17215	5267	9686	9687	21843	21843					0.1057205244223951
IYPYIRTLL	9	Unmodified	_IYPYIRTLL_					0	0	0		nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;ENST00000492449.5_1_3:184603882-184769810:+|nuORF	nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3450317382812	2	576.344792	1150.67503	0.30956	0.00017841	-0.44706	-0.00025766	-0.1375	-7.9248E-05	576.3445906344432	68.584	1.107	68.564	67.988	69.095	-0.019157					97	39	3	0	0	0	0.14786	1	17318	17318		31.268	7.2478	1	705980			17216	5267	9686	9687	21844	21844					0.1057205244223951
IYPYLLPF	8	Unmodified	_IYPYLLPF_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1;nc|ENSG00000198862|O94822-2|LTN1;LTN1|p.S465Kfs*13|1|0.33|ENSG00000198862|chr21:28967099-28967100|-/A|frameshift_variant	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.26904296875	2	513.288954	1024.56336	0.38163	0.00019589	1.1452	0.00058782	1.5268	0.00078371	513.2894078059649	72.076	0.59845	72.133	71.812	72.411	0.056572					31	21	2	0	0	0	0.31651	1	18383	18383		24.21	7.1234	1	67186			17217	8145	9687	9688	21845	21845					0.05205618085074093
IYPYLLPF	8	Unmodified	_IYPYLLPF_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1;nc|ENSG00000198862|O94822-2|LTN1;LTN1|p.S465Kfs*13|1|0.33|ENSG00000198862|chr21:28967099-28967100|-/A|frameshift_variant	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.288954	1024.56336	0.39653	0.00020353	1.0606	0.00054442	1.4572	0.00074795	513.2897720648928	72.141	0.33153	72.141	71.963	72.295	0	0.053002	6.7865E-05	NaN	24.21	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75980			17218	8145	9687	9688							0.05205618085074093
IYPYLLPF	8	Unmodified	_IYPYLLPF_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1;nc|ENSG00000198862|O94822-2|LTN1;LTN1|p.S465Kfs*13|1|0.33|ENSG00000198862|chr21:28967099-28967100|-/A|frameshift_variant	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	513.288954	1024.56336	0.30299	0.00015552	0.28811	0.00014788	0.5911	0.0003034	513.7897751350584	72.017	0.29948	71.989	71.901	72.2	-0.027275	-0.098191	-0.0007252	NaN	24.21	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131550			17219	8145	9687	9688							0.05205618085074093
IYPYNRILF	9	Unmodified	_IYPYNRILF_					0	0	0		L1MB8_dup13464|chr15:84896708-84897093:+|1.771092530459868|0.084635510208519|4.39|524.0|2|1|sense	L1MB8_dup13464|chr15:84896708-84897093:+|1.771092530459868|0.084635510208519|4.39|524.0|2|1|sense	L1MB8_dup13464|chr15:84896708-84897093:+|1.771092530459868|0.084635510208519|4.39|524.0|2|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.32666015625	2	599.834591	1197.65463	0.47164	0.00028291	0.19068	0.00011437	0.66232	0.00039728	599.8345140173509	70.9	0.3085	70.875	70.69	70.999	-0.024872					14	10	2	0	0	0	0.25066	1	17950	17950		11.64	1.5664	1	215220			17220	12452	9688	9689	21846	21846					0.06370881782413562
IYPYVIQEL	9	Unmodified	_IYPYVIQEL_					0	0	0		ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.3128662109375	2	569.313158	1136.61176	0.60969	0.0003471	-1.0353	-0.0005894	-0.42559	-0.0002423	569.312451735248	77.623	1.3023	77.623	77.256	78.558	0					105	48	3	0	0	0	0.020233	1	20056	20056		63.961	34.879	1	996840			17221	7074	9689	9690	21847	21847					0.04892066934326067
IYPYVIQEL	9	Unmodified	_IYPYVIQEL_					0	0	0		ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	569.313158	1136.61176	0.72534	0.00041295	-1.1154	-0.00063499	-0.39002	-0.00022205	569.3122892665655	77.656	1.1402	77.625	77.186	78.326	-0.031334	-0.024306	9.7931E-05	NaN	63.961	87	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	971480			17222	7074	9689	9690							0.04892066934326067
IYQDQEQR	8	Unmodified	_IYQDQEQR_					0	0	0		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7879028320312	2	540.259445	1078.50434	0.6157	0.00033264	2.471	0.001335	3.0867	0.0016676	540.7617258953844	53.245	0.72174	53.235	52.889	53.611	-0.0096054					53	26	3	0	0	0	0.31088	1	12538	12538		28.487	14.581	1	636990			17223	5478	9690	9691	21848	21848					-0.03177509947181534
IYQDVTLKW	9	Unmodified	_IYQDVTLKW_					0	0	0		nc|ENSG00000122507|Q3SYG4-5|BBS9;nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9	nc|ENSG00000122507|Q3SYG4-5|BBS9	nc|ENSG00000122507|Q3SYG4-5|BBS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3167724609375	2	583.316232	1164.61791	0.24028	0.00014016	0.076945	4.4884E-05	0.31723	0.00018504	583.3162242597895	59.219	0.5559	59.31	59.101	59.657	0.091301					32	19	2	0	0	0	0.053988	1	14450	14450		51.415	20.147	1	349430			17224	3046	9691	9692	21849	21849					0.042185851658587126
IYQDVTLKW	9	Unmodified	_IYQDVTLKW_					0	0	0		nc|ENSG00000122507|Q3SYG4-5|BBS9;nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9	nc|ENSG00000122507|Q3SYG4-5|BBS9	nc|ENSG00000122507|Q3SYG4-5|BBS9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	583.316232	1164.61791	0.17483	0.00010198	0.20307	0.00011845	0.3779	0.00022044	583.316376144435	59.437	0.51382	59.437	59.215	59.728	0	0.063939	0.00015029	NaN	51.415	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346290			17225	3046	9691	9692							0.042185851658587126
IYQDVTLKW	9	Unmodified	_IYQDVTLKW_					0	0	0		nc|ENSG00000122507|Q3SYG4-5|BBS9;nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9	nc|ENSG00000122507|Q3SYG4-5|BBS9	nc|ENSG00000122507|Q3SYG4-5|BBS9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	583.316232	1164.61791	0.48727	0.00028423	-0.0020722	-1.2088E-06	0.4852	0.00028302	583.3163299439657	59.387	0.47379	59.372	59.144	59.618	-0.014267	-0.00077324	-8.9034E-05	NaN	51.415	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420070			17226	3046	9691	9692							0.042185851658587126
IYQFIMDRF	9	Oxidation (M)	_IYQFIM(Oxidation (M))DRF_		IYQFIM(1)DRF		IYQFIM(120)DRF	0	0	1		ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.8079833984375	2	624.807716	1247.60088	0.35834	0.00022389	-0.043369	-2.7097E-05	0.31497	0.0001968	624.8077566643047	62.166	1.2767	62.166	61.891	63.168	0					142	47	4	0	0	0	0.0011116	5	15316	15274;15316;15365;15419;15484		121.35	66.572	1	4751000			17227	690	9692	9693	21850;21851;21852;21853;21854	21851		83			-0.01301658711622622
IYQFIMDRF	9	Oxidation (M)	_IYQFIM(Oxidation (M))DRF_		IYQFIM(1)DRF		IYQFIM(130)DRF	0	0	1		ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.8080444335938	2	624.807716	1247.60088	-0.069279	-4.3286E-05	0.39781	0.00024855	0.32853	0.00020527	624.8080466497014	62.126	1.6375	62.223	61.841	63.479	0.096985					151	59	5	0	0	0	0.00024732	4	15300	15249;15300;15349;15394		132.38	84.034	1	5125900			17228	690	9692	9693	21855;21856;21857;21858	21856		83			-0.01301658711622622
IYQFIMDRF	9	Oxidation (M)	_IYQFIM(Oxidation (M))DRF_		IYQFIM(1)DRF		IYQFIM(130)DRF	0	0	1		ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.8080444335938	2	624.807716	1247.60088	0.16804	0.00010499	0.11656	7.283E-05	0.2846	0.00017782	624.8078532457728	62.168	1.4728	62.159	61.878	63.351	-0.0085526					152	54	5	0	0	0	0.00024732	5	15312	15263;15312;15352;15407;15481		132.38	92.422	1	5076500			17229	690	9692	9693	21859;21860;21861;21862;21863	21860		83			-0.01301658711622622
IYQGRINEL	9	Unmodified	_IYQGRINEL_					0	0	0		ENSG00000072071|ENST00000361434|ADGRL1;nc|ENSG00000072071|O94910|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3037109375	2	553.303655	1104.59276	0.85871	0.00047513	-0.30089	-0.00016648	0.55782	0.00030864	553.3032620297298	47.035	0.82637	47.089	46.796	47.622	0.054375					50	22	3	0	0	0	0.11461	1	10663	10663		36.127	0	1	1344500			17230	969	9693	9694	21864	21864					0.04464530363270569
IYQGRLWAF	9	Unmodified	_IYQGRLWAF_					0	0	0		ENSG00000240247|ENST00000382689|DEFA1B;ENSG00000239839|ENST00000327857|DEFA3;ENSG00000206047|ENST00000382692|DEFA1	ENSG00000240247|ENST00000382689|DEFA1B	ENSG00000240247|ENST00000382689|DEFA1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3110961914062	2	577.311284	1152.60801	0.12705	7.3347E-05	1.0602	0.00061206	1.1872	0.00068541	577.3110137523464	64.974	1.005	64.974	64.454	65.458	0					90	36	3	0	0	0	0.0082143	1	16196	16196		88.904	52.437	1	808450			17231	8311	9694	9695	21865	21865					0.037814419511278174
IYQGRLWAF	9	Unmodified	_IYQGRLWAF_					0	0	0		ENSG00000240247|ENST00000382689|DEFA1B;ENSG00000239839|ENST00000327857|DEFA3;ENSG00000206047|ENST00000382692|DEFA1	ENSG00000240247|ENST00000382689|DEFA1B	ENSG00000240247|ENST00000382689|DEFA1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.31103515625	2	577.311284	1152.60801	0.30955	0.00017871	0.90541	0.0005227	1.215	0.00070141	577.3109620980777	64.903	0.91172	64.992	64.441	65.352	0.088882					81	33	3	0	0	0	0.074331	1	16157	16157		61.357	40.486	1	864260			17232	8311	9694	9695	21866	21866					0.037814419511278174
IYQHRFNFF	9	Unmodified	_IYQHRFNFF_					0	0	0		ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.5490417480469	3	424.548852	1270.62473	-0.0071561	-3.0381E-06	0.43995	0.00018678	0.4328	0.00018374	424.8833753932572	51.646	0.66851	51.646	51.354	52.023	0					41	24	2	0	0	0	0.048175	1	12063	12063		39.95	12.321	1	410940			17233	4888	9695	9696	21867	21867					0.00023942837083268387
IYQHRFNFF	9	Unmodified	_IYQHRFNFF_					0	0	0		ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	424.548852	1270.62473	-0.096823	-4.1106E-05	0.36332	0.00015425	0.26649	0.00011314	424.5490497801587	51.655	0.70715	51.702	51.375	52.082	0.046574	-0.020669	-5.9539E-05	NaN	39.95	42	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378310			17234	4888	9695	9696							0.00023942837083268387
IYQHRFNFF	9	Unmodified	_IYQHRFNFF_					0	0	0		ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	424.548852	1270.62473	-0.17926	-7.6106E-05	0.4184	0.00017763	0.23913	0.00010152	424.54902694632443	51.821	0.59138	51.82	51.602	52.194	-0.00080872	0.097443	1.0613E-05	NaN	39.95	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	554020			17235	4888	9695	9696							0.00023942837083268387
IYQKAFDLI	9	Unmodified	_IYQKAFDLI_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8131713867188	2	555.813325	1109.6121	0.52549	0.00029207	-0.3903	-0.00021693	0.13519	7.5139E-05	555.8131066458078	60.506	1.9342	60.506	60.15	62.084	0					151	71	4	0	0	0	1.2283E-05	5	14813	14764;14813;14858;14907;15003		155.03	69.754	1	22750000			17236	536	9696	9697	21868;21869;21870;21871;21872	21869					0.061674866541807205
IYQKAFDLI	9	Unmodified	_IYQKAFDLI_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8133544921875	2	555.813325	1109.6121	0.45867	0.00025493	-0.24852	-0.00013813	0.21015	0.0001168	555.8131693040833	60.435	2.1799	60.53	60.019	62.199	0.095093					166	79	5	0	0	0	1.2283E-05	7	14822	14731;14779;14822;14870;14932;14979;15186		155.03	69.754	1	19083000			17237	536	9696	9697	21873;21874;21875;21876;21877;21878;21879	21875					0.061674866541807205
IYQKAFDLI	9	Unmodified	_IYQKAFDLI_					0	0	0		ENSG00000025800|ENST00000373625|KPNA6;ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000025800|ENST00000373625|KPNA6	ENSG00000025800|ENST00000373625|KPNA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8133544921875	2	555.813325	1109.6121	0.52828	0.00029362	-0.30832	-0.00017137	0.21996	0.00012226	555.8131404820958	60.539	1.9486	60.529	60.059	62.008	-0.0094566					160	71	4	0	0	0	1.2283E-05	6	14807	14758;14807;14849;14897;14976;15205		155.03	69.754	1	21693000			17238	536	9696	9697	21880;21881;21882;21883;21884;21885	21881					0.061674866541807205
IYQKAFEHL	9	Unmodified	_IYQKAFEHL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.8085327148438	2	574.808574	1147.60259	0.61442	0.00035317	-0.32561	-0.00018716	0.28881	0.00016601	574.8083196930161	37.351	1.5578	37.351	37.039	38.597	0					144	55	5	0	0	0	4.3828E-07	3	7686	7634;7686;7727		163.04	104.36	1	5624000			17239	4305	9697	9698	21886;21887;21888	21887					0.03469718368660324
IYQKAFEHL	9	Unmodified	_IYQKAFEHL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.80859375	2	574.808574	1147.60259	0.41139	0.00023647	-0.17446	-0.00010028	0.23693	0.00013619	574.8084003683492	37.247	1.588	37.334	36.95	38.538	0.08741					153	57	5	0	0	0	8.4618E-08	4	7670	7585;7629;7670;7715		176.84	123	1	4067900			17240	4305	9697	9698	21889;21890;21891;21892	21891					0.03469718368660324
IYQKAFEHL	9	Unmodified	_IYQKAFEHL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.8086547851562	2	574.808574	1147.60259	0.36894	0.00021207	-0.055866	-3.2112E-05	0.31307	0.00017996	574.8084531264999	37.183	1.3111	37.276	36.951	38.262	0.093018					128	47	4	0	0	0	4.3828E-07	4	7582	7582;7629;7675;7722		163.04	109.2	1	5703000			17241	4305	9697	9698	21893;21894;21895;21896	21893					0.03469718368660324
IYQKFRNQF	9	Unmodified	_IYQKFRNQF_					0	0	0		ENSG00000188735|ENST00000449592|TMEM120B	ENSG00000188735|ENST00000449592|TMEM120B	ENSG00000188735|ENST00000449592|TMEM120B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.294677734375	2	622.332747	1242.65094	0.17827	0.00011094	-0.63648	-0.0003961	-0.45821	-0.00028516	622.3322516603182	69.744	0.3536	69.744	69.566	69.92	0					19	12	2	0	0	0	0.24913	1	17681	17681		12.532	4.6214	1	148580			17242	7770	9698	9699	21897	21897					0.039322120085671486
IYQKFRNQF	9	Unmodified	_IYQKFRNQF_					0	0	0		ENSG00000188735|ENST00000449592|TMEM120B	ENSG00000188735|ENST00000449592|TMEM120B	ENSG00000188735|ENST00000449592|TMEM120B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.2948608398438	2	622.332747	1242.65094	0.13723	8.5401E-05	-0.72422	-0.0004507	-0.58699	-0.0003653	622.8339573162883	69.841	0.29045	69.818	69.647	69.937	-0.022087					18	10	2	0	0	0	0.24913	1	17670	17670		12.532	0.89125	1	153660			17243	7770	9698	9699	21898	21898					0.039322120085671486
IYQKKYLLL	9	Unmodified	_IYQKKYLLL_					0	0	0		nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;ENST00000486313.1_1_7:91731925-91739478:+|nuORF;ENST00000487258.5_1_7:91722364-91739470:+|nuORF;nc|ENSG00000160299|O95613-2|PCNT;PCNT|p.S3190Lfs*20|1|0.06|ENSG00000160299|chr21:46441029-46441030|-/TAACA|frameshift_variant;PCNT|p.L3177Gfs*37|1|0.25|ENSG00000160299|chr21:46440989-46440990|TT/-|frameshift_variant;ENSG00000160299|ENST00000359568|PCNT	nc|ENSG00000127914|Q99996-3|AKAP9;nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000127914|Q99996-3|AKAP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8311157226562	2	591.368267	1180.72198	0.3172	0.00018758	-0.20888	-0.00012353	0.10831	6.4054E-05	591.8694826786153	45.754	0.36658	45.814	45.677	46.043	0.059834					14	12	2	0	0	0	0.22596	1	10285	10285		21.747	5.8995	1	267070			17244	3339;5457	9699	9700	21899	21899					0.13884911993363858
IYQKVRHRL	9	Unmodified	_IYQKVRHRL_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8699951171875	2	606.869831	1211.72511	0.39425	0.00023926	-0.78864	-0.0004786	-0.39439	-0.00023934	606.8698032905536	16.858	0.3492	16.858	16.72	17.069	0					23	11	3	0	0	0	0.30824	1	1483	1483		7.2892	0	1	63353			17245	4478	9700	9701	21900	21900					0.12771599890766083
IYQKVRHRL	9	Unmodified	_IYQKVRHRL_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.86962890625	2	606.869831	1211.72511	0.27681	0.00016799	-0.42621	-0.00025865	-0.1494	-9.0664E-05	606.869977894931	17.106	0.4812	16.988	16.72	17.201	-0.11739					26	17	2	0	0	0	0.2869	1	1519	1519		10.824	6.4947	1	48778			17246	4478	9700	9701	21901	21901					0.12771599890766083
IYQKYIARF	9	Unmodified	_IYQKYIARF_					0	0	0		ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.3407592773438	2	601.340041	1200.66553	0.344	0.00020686	0.3212	0.00019315	0.6652	0.00040001	601.3402918007599	42.08	0.40001	42.08	41.851	42.251	0					25	13	2	0	0	0	0.004681	1	9117	9117		88.954	58.317	1	641320			17247	3529	9701	9702	21902	21902					0.07322284156703063
IYQKYIARF	9	Unmodified	_IYQKYIARF_					0	0	0		ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.34033203125	2	601.340041	1200.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.675	1	41.772	41.272	42.272	0.096626								0	0	0	0.011096	1	8997	8997		78.728	48.092	1				17248	3529	9701	9702	21903	21903					0.07322284156703063
IYQLQDVF	8	Unmodified	_IYQLQDVF_					0	0	0		ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	ENSG00000103035|ENST00000219313|PSMD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.8054809570312	2	513.26875	1024.52295	0.40741	0.00020911	-1.1807	-0.000606	-0.77326	-0.00039689	513.2685360919108	72.276	1.2528	72.332	71.949	73.202	0.056572					85	45	3	0	0	0	0.33245	1	18484	18484		19.439	4.8573	1	599480			17249	1801	9702	9703	21904	21904					0.011666516946661432
IYQLSCKWSF	10	Unmodified	_IYQLSCKWSF_					0	0	0		ENSG00000113749|ENST00000636584|HRH2;nc|ENSG00000113749|P25021|HRH2;nc|ENSG00000113749|P25021-2|HRH2	ENSG00000113749|ENST00000636584|HRH2	ENSG00000113749|ENST00000636584|HRH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.9117736816406	3	425.54612	1273.61653	0.045431	1.9333E-05	2.858	0.0012162	2.9034	0.0012355	425.5471231666147	36.292	0.32072	36.292	36.065	36.385	0					16	11	2	0	0	0	0.31911	1	7372	7372		6.6304	1.5829	1	234160			17250	2529	9703	9704	21905	21905					-0.0093337219454952
IYQMLKNLL	9	Oxidation (M)	_IYQM(Oxidation (M))LKNLL_		IYQM(1)LKNLL		IYQM(59)LKNLL	0	0	1		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.3292846679688	2	576.328285	1150.64202	0.30598	0.00017635	0.48847	0.00028152	0.79445	0.00045786	576.3285202197508	57.561	0.52412	57.561	57.273	57.798	0					41	18	3	0	0	0	0.034444	1	13923	13923		58.679	16.839	1	523960			17251	2307	9704	9705	21906	21906		284			0.07272102327874563
IYQMLKNLL	9	Oxidation (M)	_IYQM(Oxidation (M))LKNLL_		IYQM(1)LKNLL		IYQM(78)LKNLL	0	0	1		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3290405273438	2	576.328285	1150.64202	0.35815	0.00020641	0.5558	0.00032032	0.91395	0.00052674	576.3284461839279	57.335	0.4489	57.421	57.21	57.659	0.085621					29	15	2	0	0	0	0.01083	1	13850	13850		78.149	19.471	1	826700			17252	2307	9704	9705	21907	21907		284			0.07272102327874563
IYQMLKNLL	9	Oxidation (M)	_IYQM(Oxidation (M))LKNLL_					0	0	1		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	576.328285	1150.64202	0.11193	6.4508E-05	0.45596	0.00026278	0.56788	0.00032729	576.3284934445148	57.642	0.5378	57.625	57.364	57.901	-0.0172	0.10201	-6.0146E-05	NaN	78.149	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	684290			17253	2307	9704	9705				284			0.07272102327874563
IYQNQFVQM	9	Oxidation (M)	_IYQNQFVQM(Oxidation (M))_		IYQNQFVQM(1)		IYQNQFVQM(89)	0	0	1		nc|ENSG00000135218|P16671-2|CD36;nc|ENSG00000135218|P16671-3|CD36;ENSG00000135218|ENST00000447544|CD36	nc|ENSG00000135218|P16671-2|CD36	nc|ENSG00000135218|P16671-2|CD36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7825927734375	2	593.781699	1185.54884	0.55906	0.00033196	-0.64846	-0.00038504	-0.089394	-5.308E-05	593.7816271869194	45.873	0.33324	45.938	45.84	46.174	0.065048					18	11	2	0	0	0	0.0046874	1	10293	10293		88.904	50.289	1	230970			17254	3852	9705	9706	21908	21908		482			-0.03650822125382547
IYQNQFVQM	9	Oxidation (M)	_IYQNQFVQM(Oxidation (M))_					0	0	1		nc|ENSG00000135218|P16671-2|CD36;nc|ENSG00000135218|P16671-3|CD36;ENSG00000135218|ENST00000447544|CD36	nc|ENSG00000135218|P16671-2|CD36	nc|ENSG00000135218|P16671-2|CD36	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	593.781699	1185.54884	0.18047	0.00010716	-0.043734	-2.5969E-05	0.13674	8.1193E-05	594.2826176872906	45.943	0.35806	46.003	45.792	46.15	0.059837	-0.010913	0.00017968	NaN	88.904	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216020			17255	3852	9705	9706				482			-0.03650822125382547
IYQQATSIPNF	11	Unmodified	_IYQQATSIPNF_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;ENSG00000172239|ENST00000306846|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.32666015625	2	641.327328	1280.6401	0.48868	0.0003134	-0.76024	-0.00048756	-0.27155	-0.00017415	641.3265480367369	63.611	0.41304	63.611	63.413	63.826	0					21	14	2	0	0	0	0.17224	1	15765	15765		61.09	46.252	1	272510			17256	6614	9706	9707	21909	21909					0.011007648436361706
IYQQATSIPNF	11	Unmodified	_IYQQATSIPNF_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;ENSG00000172239|ENST00000306846|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.3280639648438	2	641.327328	1280.6401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.562	1	63.658	63.158	64.158	0.095722								0	0	0	0.18559	1	15742	15742		35.08	20.674	1				17257	6614	9706	9707	21910	21910					0.011007648436361706
IYQQATSIPNF	11	Unmodified	_IYQQATSIPNF_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;ENSG00000172239|ENST00000306846|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	641.327328	1280.6401	0.66069	0.00042372	-0.57875	-0.00037117	0.081945	5.2553E-05	641.3265252086386	63.633	0.39141	63.624	63.379	63.77	-0.0085526	0.0066408	0.00017353	NaN	61.09	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174360			17258	6614	9706	9707							0.011007648436361706
IYQRDPLKL	9	Unmodified	_IYQRDPLKL_					0	0	0		ENST00000555641.1_1_12:57499966-57502061:-|nuORF;ENSG00000166888|ENST00000300134|STAT6	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.337890625	2	573.337498	1144.66044	-0.090666	-5.1982E-05	0.89148	0.00051112	0.80082	0.00045914	573.338134059957	39.519	2.0224	39.519	38.988	41.01	0					175	73	5	0	0	0	0.0028032	3	8323	8273;8323;8366		103.82	50.42	1	4899500			17259	6128	9707	9708	21911;21912;21913	21912					0.0938998029407685
IYQRDPLKL	9	Unmodified	_IYQRDPLKL_					0	0	0		ENST00000555641.1_1_12:57499966-57502061:-|nuORF;ENSG00000166888|ENST00000300134|STAT6	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.3377685546875	2	573.337498	1144.66044	0.22841	0.00013095	0.52187	0.00029921	0.75028	0.00043016	573.3379084227903	39.347	1.7441	39.44	38.974	40.718	0.09267					155	62	5	0	0	0	0.0040516	2	8281	8232;8281		93.938	48.239	1	5537200			17260	6128	9707	9708	21914;21915	21915					0.0938998029407685
IYQRDPLKL	9	Unmodified	_IYQRDPLKL_					0	0	0		ENST00000555641.1_1_12:57499966-57502061:-|nuORF;ENSG00000166888|ENST00000300134|STAT6	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.337890625	2	573.337498	1144.66044	0.28333	0.00016244	0.54464	0.00031226	0.82797	0.00047471	573.3379576116519	39.324	1.8309	39.423	38.81	40.641	0.099407					165	65	5	0	0	0	0.0066776	2	8244	8244;8292		84.522	42.683	1	6489600			17261	6128	9707	9708	21916;21917	21916					0.0938998029407685
IYQRHVYNL	9	Unmodified	_IYQRHVYNL_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.3250732421875	2	603.324922	1204.63529	0.61919	0.00037357	-0.46088	-0.00027806	0.15831	9.551E-05	603.3246304623041	32.029	0.86225	32.029	31.8	32.662	0					72	30	3	0	0	0	0.00094673	3	6041	6041;6089;6144		123.45	77.751	1	1337200			17262	4732	9708	9709	21918;21919;21920	21918					0.04115925491510097
IYQRHVYNL	9	Unmodified	_IYQRHVYNL_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3251953125	2	603.324922	1204.63529	0.72269	0.00043602	-0.4608	-0.00027801	0.2619	0.00015801	603.3245877878288	31.926	0.92215	31.968	31.823	32.745	0.042366					71	32	3	0	0	0	0.00094673	3	6019	6019;6069;6121		123.45	77.751	1	1537000			17263	4732	9708	9709	21921;21922;21923	21921					0.04115925491510097
IYQRHVYNL	9	Unmodified	_IYQRHVYNL_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.3253173828125	2	603.324922	1204.63529	0.39075	0.00023575	-0.19521	-0.00011777	0.19555	0.00011798	603.3247320718202	31.906	0.94844	31.947	31.748	32.696	0.040991					74	33	3	0	0	0	0.00012782	3	6014	6014;6067;6121		136.33	92.475	1	1418500			17264	4732	9708	9709	21924;21925;21926	21924					0.04115925491510097
IYQSLITEF	9	Unmodified	_IYQSLITEF_					0	0	0			REV__nc|ENSG00000075240|Q6IC98-2|GRAMD4	REV__nc|ENSG00000075240|Q6IC98-2|GRAMD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2939453125	2	557.294965	1112.57538	0.55866	0.00031134	-0.37899	-0.00021121	0.17966	0.00010013	557.2939152272891	65.924	0.71085	65.924	65.713	66.423	0					44	25	2	0	0	0	0.21905	1	16492	16492		23.148	2.2772	1	638150	+		17265	13804	9709	9710	21927	21927					0.023591900376231933
IYQSLITEF	9	Unmodified	_IYQSLITEF_					0	0	0			REV__nc|ENSG00000075240|Q6IC98-2|GRAMD4	REV__nc|ENSG00000075240|Q6IC98-2|GRAMD4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	557.294965	1112.57538	0.58499	0.00032601	-0.070525	-3.9303E-05	0.51446	0.00028671	557.2936775813432	65.823	0.82114	65.912	65.677	66.499	0.088875	-0.0088233	6.524E-06	NaN	16.942	55	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	841620	+		17266	13804	9709	9710							0.023591900376231933
IYQYIQSRF	9	Unmodified	_IYQYIQSRF_					0	0	0		nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;nc|ENSG00000157540|Q13627-5|DYRK1A;nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A	nc|ENSG00000157540|Q13627-4|DYRK1A	nc|ENSG00000157540|Q13627-4|DYRK1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.3195190429688	2	609.319306	1216.62406	0.33317	0.00020301	0.084984	5.1782E-05	0.41816	0.00025479	609.3192265439562	51.912	0.70612	51.912	51.648	52.354	0					83	25	4	0	0	0	0.00071231	1	12125	12125		155.95	90.48	1	2354000			17267	1955	9710	9711	21928	21928					0.024411033973592566
IYQYIQSRF	9	Unmodified	_IYQYIQSRF_					0	0	0		nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;nc|ENSG00000157540|Q13627-5|DYRK1A;nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A	nc|ENSG00000157540|Q13627-4|DYRK1A	nc|ENSG00000157540|Q13627-4|DYRK1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.3194580078125	2	609.319306	1216.62406	0.41025	0.00024997	-0.0098167	-5.9815E-06	0.40043	0.00024399	609.3191921243514	51.813	0.90201	51.861	51.647	52.549	0.0471					83	32	5	0	0	0	0.014987	1	12163	12163		100.71	52.96	1	2730600			17268	1955	9710	9711	21929	21929					0.024411033973592566
IYQYIQSRF	9	Unmodified	_IYQYIQSRF_					0	0	0		nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;nc|ENSG00000157540|Q13627-5|DYRK1A;nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A	nc|ENSG00000157540|Q13627-4|DYRK1A	nc|ENSG00000157540|Q13627-4|DYRK1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.319580078125	2	609.319306	1216.62406	0.091858	5.5971E-05	0.36886	0.00022475	0.46072	0.00028073	609.3194246456604	52.141	1.0527	52.14	51.793	52.846	-0.00080872					103	38	5	0	0	0	0.0022973	1	12210	12210		110.79	67.02	1	2216800			17269	1955	9710	9711	21930	21930					0.024411033973592566
IYRAQLELF	9	Unmodified	_IYRAQLELF_					0	0	0		nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2	nc|ENSG00000155744|Q8IXS8|HYCC2	nc|ENSG00000155744|Q8IXS8|HYCC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.82421875	2	576.824224	1151.63389	0.27912	0.000161	-0.97614	-0.00056306	-0.69702	-0.00040206	576.8238714305236	62.736	0.94592	62.736	62.369	63.315	0					73	34	4	0	0	0	0.0073667	1	15479	15479		96.367	40.19	1	1952500			17270	5191	9711	9712	21931	21931					0.06414291402734307
IYRAQLELF	9	Unmodified	_IYRAQLELF_					0	0	0		nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2	nc|ENSG00000155744|Q8IXS8|HYCC2	nc|ENSG00000155744|Q8IXS8|HYCC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8241577148438	2	576.824224	1151.63389	0.38659	0.00022299	-0.96979	-0.0005594	-0.5832	-0.0003364	576.8238452458758	62.626	2.2372	62.723	61.615	63.852	0.096985					124	80	4	0	0	0	0.0045335	1	15486	15486		86.332	46.382	1	2342300			17271	5191	9711	9712	21932	21932					0.06414291402734307
IYRAQLELF	9	Unmodified	_IYRAQLELF_					0	0	0		nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2	nc|ENSG00000155744|Q8IXS8|HYCC2	nc|ENSG00000155744|Q8IXS8|HYCC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8240356445312	2	576.824224	1151.63389	0.23575	0.00013599	-0.85038	-0.00049052	-0.61463	-0.00035453	576.8239255375393	62.731	0.99527	62.723	62.302	63.297	-0.0085526					81	36	3	0	0	0	0.016005	1	15459	15459		85.642	35.709	1	2253300			17272	5191	9711	9712	21933	21933					0.06414291402734307
IYREFREEESL	11	Unmodified	_IYREFREEESL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.9122619628906	3	490.912296	1469.71506	0.34597	0.00016984	0.1264	6.205E-05	0.47237	0.00023189	490.9121458141114	40.541	0.69619	40.641	40.427	41.123	0.099407					58	25	4	0	0	0	0.3871	1	8666	8666		12.929	3.6849	1	538000			17273	8602	9712	9713	21934	21934					-0.0010109741579071851
IYREFREEESL	11	Unmodified	_IYREFREEESL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	490.912296	1469.71506	0.12801	6.2841E-05	0.73231	0.0003595	0.86032	0.00042234	490.91246747928665	41.044	0.61362	41.044	40.768	41.382	0	0.26337	0.0010479	NaN	12.929	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517780			17274	8602	9712	9713							-0.0010109741579071851
IYREFREEESL	11	Unmodified	_IYREFREEESL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	490.912296	1469.71506	0.50526	0.00024804	-0.34239	-0.00016808	0.16287	7.9957E-05	490.91201539975066	40.564	0.71251	40.657	40.369	41.082	0.09267	-0.12352	-0.00053481	NaN	12.929	58	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	470010			17275	8602	9712	9713							-0.0010109741579071851
IYRFDYEGSG	10	Unmodified	_IYRFDYEGSG_					0	0	0			REV__ENSG00000075336|ENST00000169551|TIMM21	REV__ENSG00000075336|ENST00000169551|TIMM21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.7740478515625	2	603.774928	1205.5353	0.089145	5.3823E-05	-1.6058	-0.00096955	-1.5167	-0.00091573	603.7740862876093	28.457	0.56375	28.457	28.242	28.805	0.0004673					30	19	2	0	0	0	0.39935	1	4974	4974		3.5965	1.2938	1	134330	+		17276	13809	9713	9714	21935	21935					-0.059243566329541864
IYRFRKKDF	9	Unmodified	_IYRFRKKDF_					0	0	0			REV__ENSG00000085433|ENST00000369962|WDR47	REV__ENSG00000085433|ENST00000369962|WDR47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.23883056640625	3	424.911902	1271.71388	0.055622	2.3634E-05	-0.47443	-0.00020159	-0.4188	-0.00017795	424.91157912740755	36.351	1.2664	36.351	35.719	36.985	0					66	45	2	0	0	0	0.26807	1	7429	7429		13.615	13.615	1	477590	+		17277	13959	9714	9715	21936	21936					0.08888777796619252
IYRFRKKDF	9	Unmodified	_IYRFRKKDF_					0	0	0			REV__ENSG00000085433|ENST00000369962|WDR47	REV__ENSG00000085433|ENST00000369962|WDR47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.9118347167969	3	424.911902	1271.71388	0.32431	0.0001378	-0.95229	-0.00040464	-0.62798	-0.00026684	424.9112654193132	36.239	0.99492	36.325	36.085	37.08	0.08625					61	35	3	0	0	0	0.26807	2	7336	7336;7380		13.615	2.097	1	514420	+		17278	13959	9714	9715	21937;21938	21937					0.08888777796619252
IYRHFFGHTF	10	Unmodified	_IYRHFFGHTF_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-3|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.22442626953125	3	442.224368	1323.65128	0.14885	6.5825E-05	-0.16037	-7.0921E-05	-0.011523	-5.0957E-06	442.22419568576413	43.782	1.1385	43.782	43.467	44.605	0					96	41	4	0	0	0	0.01159	1	9624	9624		80.896	60.909	1	1631800			17279	8655	9715	9716	21939	21939					0.0023963172841376945
IYRHFFGHTF	10	Unmodified	_IYRHFFGHTF_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-3|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.28424072265625	3	442.224368	1323.65128	0.2734	0.0001209	-0.20172	-8.9204E-05	0.071686	3.1701E-05	442.224279806454	43.159	0.92688	43.237	42.914	43.841	0.077518					98	33	4	0	0	0	0.11233	1	9437	9437		74.772	53.901	1	1437900			17280	8655	9715	9716	21940	21940					0.0023963172841376945
IYRHFFGHTF	10	Unmodified	_IYRHFFGHTF_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-3|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2842102050781	3	442.224368	1323.65128	0.16842	7.4478E-05	-0.10486	-4.6373E-05	0.063554	2.8105E-05	442.2242911766083	43.168	1.0209	43.252	42.896	43.917	0.083992					119	37	4	0	0	0	0.17449	1	9388	9388		60.899	47.381	1	1751100			17281	8655	9715	9716	21941	21941					0.0023963172841376945
IYRKETMI	8	Unmodified	_IYRKETMI_					0	0	0			REV__nc|ENSG00000021645|Q9Y4C0-3|NRXN3	REV__nc|ENSG00000021645|Q9Y4C0-3|NRXN3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3025512695312	2	527.291702	1052.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.225	1	67.225	66.725	67.725	0								0	0	0	0.33432	1	16869	16869		21.747	0.87544	1		+		17282	13464	9716	9717	21942	21942					0.044669736052583175
IYRMVSWH	8	Unmodified	_IYRMVSWH_					0	0	0			REV__ENST00000482587.5_3_1:179833414-179833447:-|nuORF	REV__ENST00000482587.5_3_1:179833414-179833447:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.80615234375	2	546.276386	1090.53822	0.33161	0.00018115	3.0455	0.0016637	3.3772	0.0018449	546.2773755485413	28.298	0.14033	28.293	28.193	28.333	-0.0042572					5	4	2	0	0	0	0.34131	1	4912	4912		12.532	3.9383	1	92698	+		17283	21504	9717	9718	21943	21943					-0.0034275998912107752
IYRPTVVAF	9	Unmodified	_IYRPTVVAF_					0	0	0		ENST00000396522.6_1_14:21967741-21972178:-|nuORF	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	ENST00000396522.6_1_14:21967741-21972178:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7685546875	2	533.30821	1064.60187	0.35615	0.00018994	-1.9408	-0.0010351	-1.5847	-0.00084513	533.8076777386798	72.911	0.35627	72.964	72.681	73.037	0.053833					15	12	2	0	0	0	0.24739	1	18523	18523		13.508	4.1604	1	54330			17284	10118	9718	9719	21944	21944					0.07214923719629951
IYRQIAPPLPL	11	Unmodified	_IYRQIAPPLPL_					0	0	0			REV__ENSG00000146809|ENST00000451215|ASB15	REV__ENSG00000146809|ENST00000451215|ASB15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.3919677734375	2	640.889898	1279.76524	0.51219	0.00032826	-0.25882	-0.00016588	0.25337	0.00016238	640.8896185179109	74.167	0.61861	74.136	73.91	74.529	-0.030663					47	21	3	0	0	0	0.41896	1	18949	18949		8.7454	1.6437	1	1772400	+		17285	16358	9719	9720	21945	21945					0.13655101770632427
IYRRHGDAF	9	Unmodified	_IYRRHGDAF_					0	0	0			REV__nc|ENSG00000102890|Q96BJ8-3|ELMO3	REV__nc|ENSG00000102890|Q96BJ8-3|ELMO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2794189453125	2	567.793789	1133.57303	0.27345	0.00015526	2.0431	0.00116	2.3165	0.0013153	567.7949913167945	70.998	0.33018	70.998	70.797	71.128	0					18	11	3	0	0	0	0.22596	1	18033	18033		21.747	3.6117	1	204420	+		17286	14338	9720	9721	21946	21946					0.01158199143173988
IYRVCQVLF	9	Unmodified	_IYRVCQVLF_					0	0	0		ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2888793945312	2	570.815344	1139.61614	0.31743	0.0001812	2.3228	0.0013259	2.6403	0.0015071	570.815219126321	66.646	0.40187	66.646	66.423	66.825	0					16	13	2	0	0	0	0.21905	1	16724	16724		23.148	9.6405	1	106020			17287	3345	9721	9722	21947	21947					0.0519125287623865
IYRVLDPAI	9	Unmodified	_IYRVLDPAI_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.8399658203125	2	530.313492	1058.61243	0.55251	0.000293	-0.43887	-0.00023274	0.11364	6.0263E-05	530.3136271703072	67.791	0.39632	67.869	67.603	68	0.078041					17	13	2	0	0	0	0.24739	1	16989	16989		8.5933	0	1	77230			17288	6599	9722	9723	21948	21948					0.08546906374044738
IYRWHNME	8	Unmodified	_IYRWHNME_					0	0	0			REV__SLC41A1|p.L281M|1|0.28|ENSG00000133065|chr1:205798672-205798672|G/T|missense_variant	REV__SLC41A1|p.L281M|1|0.28|ENSG00000133065|chr1:205798672-205798672|G/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.2862548828125	2	574.768926	1147.5233	0.46342	0.00026636	1.5768	0.00090627	2.0402	0.0011726	574.7701984849645	64.124	0.67336	64.114	63.822	64.495	-0.0095291					58	24	3	0	0	0	0.34218	1	15832	15832		9.3474	0.75416	1	300080	+		17289	23306	9723	9724	21949	21949					-0.04456251857118332
IYRYGDKNF	9	Unmodified	_IYRYGDKNF_					0	0	0			REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L	REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.830322265625	2	588.29583	1174.57711	0.45863	0.00026981	0.10804	6.3561E-05	0.56667	0.00033337	588.2959984543766	43.608	0.40714	43.692	43.434	43.841	0.083992					30	14	3	0	0	0	0.1854	1	9594	9594		25.399	0	1	676420	+		17290	15428	9724	9725	21950	21950					-0.0031975615377177746
IYSAERFLI	9	Unmodified	_IYSAERFLI_					0	0	0		nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF	nc|ENSG00000198431|Q16881-7|TXNRD1	nc|ENSG00000198431|Q16881-7|TXNRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3116455078125	2	556.310949	1110.60735	0.13742	7.6449E-05	1.6565	0.00092155	1.794	0.000998	556.3119997963497	61.297	1.1159	61.297	61.022	62.138	0					101	41	3	0	0	0	0.011693	3	15061	15040;15061;15091		76.825	22.992	1	1551200			17291	8074	9725	9726	21951;21952;21953	21952					0.0564660251143323
IYSAERFLI	9	Unmodified	_IYSAERFLI_					0	0	0		nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF	nc|ENSG00000198431|Q16881-7|TXNRD1	nc|ENSG00000198431|Q16881-7|TXNRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3114624023438	2	556.310949	1110.60735	0.047329	2.633E-05	1.7677	0.0009834	1.815	0.0010097	556.3120274423457	61.233	1.0814	61.33	61.093	62.175	0.096989					106	39	3	0	0	0	0.015924	2	15019	15019;15069		70.332	24.632	1	1845000			17292	8074	9725	9726	21954;21955	21954					0.0564660251143323
IYSAERFLI	9	Unmodified	_IYSAERFLI_					0	0	0		nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF	nc|ENSG00000198431|Q16881-7|TXNRD1	nc|ENSG00000198431|Q16881-7|TXNRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3114013671875	2	556.310949	1110.60735	0.047433	2.6387E-05	1.8756	0.0010434	1.923	0.0010698	556.312006448769	61.268	1.149	61.258	60.992	62.141	-0.0094566					85	41	3	0	0	0	0.017549	2	15035	15035;15083		67.838	22.139	1	1825700			17293	8074	9725	9726	21956;21957	21956					0.0564660251143323
IYSDLADLTL	10	Unmodified	_IYSDLADLTL_					0	0	0		nc|ENSG00000111696|Q86UY8-2|NT5DC3;ENSG00000111696|ENST00000392876|NT5DC3	nc|ENSG00000111696|Q86UY8-2|NT5DC3	nc|ENSG00000111696|Q86UY8-2|NT5DC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3429565429688	2	562.297704	1122.58086	0.28983	0.00016297	-0.053827	-3.0267E-05	0.236	0.0001327	562.2981272273762	80.213	1.3265	80.279	79.673	80.999	0.065102					108	51	4	0	0	0	0.11191	1	20679	20679		51.63	9.7902	1	3422200			17294	2382	9726	9727	21958	21958					0.024468688294291496
IYSEFLKRF	9	Unmodified	_IYSEFLKRF_					0	0	0		nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.2997436523438	2	601.832049	1201.64954	0.73587	0.00044287	0.78924	0.00047499	1.5251	0.00091786	601.8324590306704	54.139	0.76595	54.139	53.914	54.68	0					52	27	3	0	0	0	0.20881	1	12809	12809		27.629	8.3718	1	534430			17295	2832	9727	9728	21959	21959					0.056785779197980446
IYSEFLKRF	9	Unmodified	_IYSEFLKRF_					0	0	0		nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.2996826171875	2	601.832049	1201.64954	0.64952	0.0003909	1.0772	0.00064832	1.7268	0.0010392	601.8325447290308	54.088	0.58068	54.151	53.93	54.511	0.063202					35	21	2	0	0	0	0.23235	1	12782	12782		21.537	7.6309	1	504850			17296	2832	9727	9728	21960	21960					0.056785779197980446
IYSEMIHNL	9	Oxidation (M)	_IYSEM(Oxidation (M))IHNL_		IYSEM(1)IHNL		IYSEM(110)IHNL	0	0	1		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2766723632812	2	568.276249	1134.53795	0.14945	8.4929E-05	-0.60475	-0.00034367	-0.4553	-0.00025874	568.2757997632827	41.935	0.35766	41.935	41.809	42.166	0					18	12	2	0	0	0	0.0024096	1	9108	9108		106.94	53.107	1	931950			17297	1198	9728	9729	21961	21961		143			-0.02394224499653319
IYSEMIHNL	9	Oxidation (M)	_IYSEM(Oxidation (M))IHNL_		IYSEM(1)IHNL		IYSEM(86)IHNL	0	0	1		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2761840820312	2	568.276249	1134.53795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.788	1	41.788	41.288	42.288	0								0	0	0	0.0060707	1	9038	9038		86.332	36.399	1				17298	1198	9728	9729	21962	21962		143			-0.02394224499653319
IYSEMIHNL	9	Oxidation (M)	_IYSEM(Oxidation (M))IHNL_		IYSEM(1)IHNL		IYSEM(150)IHNL	0	0	1		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.27587890625	2	568.276249	1134.53795	0.23584	0.00013402	-0.5783	-0.00032863	-0.34246	-0.00019461	568.2759772532287	41.401	0.29364	41.491	41.273	41.566	0.090252					25	10	4	0	0	0	4.3881E-05	1	8905	8905		149.91	85.678	1	731180			17299	1198	9728	9729	21963	21963		143			-0.02394224499653319
IYSEMIHNL	9	Oxidation (M)	_IYSEM(Oxidation (M))IHNL_		IYSEM(1)IHNL		IYSEM(80)IHNL	0	0	1		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2766723632812	2	568.276249	1134.53795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.747	1	41.837	41.337	42.337	0.090252								0	0	0	0.010523	1	9028	9028		79.596	33.897	1				17300	1198	9728	9729	21964	21964		143			-0.02394224499653319
IYSEMIHNL	9	Oxidation (M)	_IYSEM(Oxidation (M))IHNL_		IYSEM(1)IHNL		IYSEM(110)IHNL	0	0	1		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2764282226562	2	568.276249	1134.53795	0.30268	0.000172	-0.43768	-0.00024872	-0.135	-7.6718E-05	568.2759713514824	41.33	0.35157	41.426	41.177	41.529	0.096622					25	12	3	0	0	0	0.0024096	1	8893	8893		106.94	57.007	1	823040			17301	1198	9728	9729	21965	21965		143			-0.02394224499653319
IYSEMIHNL	9	Oxidation (M)	_IYSEM(Oxidation (M))IHNL_		IYSEM(1)IHNL		IYSEM(86)IHNL	0	0	1		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2770385742188	2	568.276249	1134.53795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.678	1	41.775	41.275	42.275	0.096626								0	0	0	0.0060707	1	8998	8998		86.332	40.632	1				17302	1198	9728	9729	21966	21966		143			-0.02394224499653319
IYSEMIHNL	9	Oxidation (M)	_IYSEM(Oxidation (M))IHNL_					0	0	1		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	568.276249	1134.53795	0.34799	0.00019775	0.24088	0.00013689	0.58887	0.00033464	568.7780228635675	41.621	0.049816	41.711	41.676	41.725	0.090252	-0.11212	0.00036573	NaN	106.94	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	809270			17303	1198	9728	9729				143			-0.02394224499653319
IYSEVATLI	9	Unmodified	_IYSEVATLI_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7843017578125	2	504.784233	1007.55391	0.36996	0.00018675	-0.35141	-0.00017739	0.018549	9.3632E-06	504.78395884759453	71.441	0.91893	71.441	71.098	72.017	0					102	32	4	0	0	0	5.2996E-06	5	18164	18113;18164;18211;18261;18304		156.16	70.799	1	7490100			17304	1113	9729	9730	21967;21968;21969;21970;21971	21968					0.050438050089155695
IYSEVATLI	9	Unmodified	_IYSEVATLI_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.78399658203125	2	504.784233	1007.55391	0.30417	0.00015354	-0.34379	-0.00017354	-0.039617	-1.9998E-05	504.78396070909764	71.394	0.89191	71.454	71.117	72.009	0.060318					102	31	4	0	0	0	0.00014409	5	18128	18085;18128;18180;18232;18277		133.7	48.345	1	7003600			17305	1113	9729	9730	21972;21973;21974;21975;21976	21973					0.050438050089155695
IYSEVATLI	9	Unmodified	_IYSEVATLI_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7839050292969	2	504.784233	1007.55391	0.41794	0.00021097	-0.48427	-0.00024445	-0.066335	-3.3485E-05	504.7839091850426	71.479	0.88059	71.452	71.128	72.009	-0.027275					98	31	4	0	0	0	0.00014409	5	18149	18102;18149;18204;18256;18291		133.7	48.345	1	6324600			17306	1113	9729	9730	21977;21978;21979;21980;21981	21978					0.050438050089155695
IYSFHETL	8	Unmodified	_IYSFHETL_					0	0	0		ENST00000595395.1_1_19:42061422-42061712:+|nuORF	ENST00000595395.1_1_19:42061422-42061712:+|nuORF	ENST00000595395.1_1_19:42061422-42061712:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2638244628906	2	505.2531	1008.49165	0.19899	0.00010054	0.82884	0.00041877	1.0278	0.00051931	505.2536708528759	76.318	1.2221	76.318	75.957	77.179	0					111	44	4	0	0	0	0.39956	1	19799	19799		19.439	0.18201	1	3007400			17307	12221	9730	9731	21982	21982					-0.01225921339425895
IYSFLDLRF	9	Unmodified	_IYSFLDLRF_					0	0	0		ENST00000311117.7_1_7:104654969-104681369:+|nuORF	ENST00000311117.7_1_7:104654969-104681369:+|nuORF	ENST00000311117.7_1_7:104654969-104681369:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8063354492188	2	587.318774	1172.623	0.79975	0.00046971	-0.17457	-0.00010253	0.62518	0.00036718	587.3185501278645	50.641	0.86909	50.641	50.353	51.222	0					104	31	5	0	0	0	0.28128	1	11726	11726		11.64	0	1	4085100			17308	9314	9731	9732	21983	21983					0.043588890284581794
IYSFLIPLVRT	11	Unmodified	_IYSFLIPLVRT_					0	0	0		NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.9396057128906	3	441.267463	1320.78056	0.080393	3.5475E-05	0.77934	0.0003439	0.85973	0.00037937	441.2676434867849	49.263	0.4092	49.307	49.016	49.425	0.044891					19	14	2	0	0	0	0.3325	1	11363	11363		4.1166	1.2733	1	121820			17309	4584	9732	9733	21984	21984					0.13299968567821452
IYSFRNKE	8	Unmodified	_IYSFRNKE_					0	0	0		ENSG00000172640|ENST00000310248|OR10AD1;ENSG00000172324|ENST00000302040|OR5A2	ENSG00000172640|ENST00000310248|OR10AD1	ENSG00000172640|ENST00000310248|OR10AD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8142700195312	2	528.777274	1055.53999	0.74493	0.0003939	2.1145	0.0011181	2.8594	0.001512	528.777895576935	78.969	0.18719	78.969	78.828	79.015	0					10	7	2	0	0	0	0.34319	1	20422	20422		5.7604	0.52976	1	67855			17310	6621	9733	9734	21985	21985					0.01444572300465552
IYSGCLIL	8	Unmodified	_IYSGCLIL_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2428894042969	2	441.243689	880.472826	0.46487	0.00020512	0.35849	0.00015818	0.82336	0.0003633	441.24388257553875	74.711	1.1697	74.711	74.225	75.395	0					59	41	2	0	0	0	0.20019	1	19157	19157		42.968	0	1	479610			17311	2989	9734	9735	21986	21986					0.02780825765182726
IYSGCLIL	8	Unmodified	_IYSGCLIL_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	441.243689	880.472826	0.40878	0.00018037	-1.1537	-0.00050907	-0.74493	-0.0003287	441.24321853574145	74.704	0.67265	74.672	74.387	75.059	-0.031487	-0.02279	-0.00030469	NaN	42.968	44	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369280			17312	2989	9734	9735							0.02780825765182726
IYSGFGLSEL	10	Unmodified	_IYSGFGLSEL_					0	0	0			REV__ENSG00000117505|ENST00000370272|DR1	REV__ENSG00000117505|ENST00000370272|DR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8087768554688	2	543.279315	1084.54408	0.28727	0.00015607	0.84202	0.00045745	1.1293	0.00061352	543.2795185990398	81.245	0.84119	81.314	80.809	81.65	0.068985					55	41	2	0	0	0	0.31143	1	21152	21152		17.113	1.8644	1	152830	+		17313	14974	9735	9736	21987	21987					0.005186170035358373
IYSHVTWKSF	10	Unmodified	_IYSHVTWKSF_					0	0	0		ENST00000258739.8_1_7:6501985-6502291:-|nuORF	ENST00000258739.8_1_7:6501985-6502291:-|nuORF	ENST00000258739.8_1_7:6501985-6502291:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.22015380859375	3	423.220513	1266.63971	0.13394	5.6686E-05	-0.41315	-0.00017486	-0.27921	-0.00011817	423.2203533850499	39.047	0.61366	39.147	38.81	39.424	0.099407					26	21	2	0	0	0	0.36698	1	8228	8228		9.544	1.3884	1	311410			17314	8946	9736	9737	21988	21988					0.017053899144229945
IYSIDFTRF	9	Unmodified	_IYSIDFTRF_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3009643554688	2	581.300581	1160.58661	0.19873	0.00011552	0.16945	9.8503E-05	0.36819	0.00021403	581.3008722622397	69.831	1.951	69.831	69.147	71.098	0					215	70	5	0	0	0	8.7734E-17	5	17651	17603;17651;17691;17739;18005		216.57	150.11	1	14754000			17315	6895	9737	9738	21989;21990;21991;21992;21993	21990					0.012740121317847297
IYSIDFTRF	9	Unmodified	_IYSIDFTRF_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.3009033203125	2	581.300581	1160.58661	0.19447	0.00011305	0.14135	8.2166E-05	0.33582	0.00019521	581.3008220710094	69.773	1.9891	69.839	69.34	71.329	0.066048					209	70	5	0	0	0	8.7734E-17	8	17637	17591;17637;17680;17721;17765;17973;18029;18083		216.57	136.33	1	14177000			17316	6895	9737	9738	21994;21995;21996;21997;21998;21999;22000;22001	21995					0.012740121317847297
IYSIDFTRF	9	Unmodified	_IYSIDFTRF_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.3008422851562	2	581.300581	1160.58661	0.2666	0.00015497	0.09661	5.616E-05	0.36321	0.00021113	581.3008509808645	69.857	1.617	69.835	69.435	71.052	-0.022087					204	58	5	0	0	0	8.7734E-17	6	17635	17592;17635;17683;17733;17784;17984		216.57	150.11	1	16317000			17317	6895	9737	9738	22002;22003;22004;22005;22006;22007	22003					0.012740121317847297
IYSIDFTRF	9	Unmodified	_IYSIDFTRF_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.2890014648438	2	581.300581	1160.58661	0.39189	0.0002278	0.92598	0.00053827	1.3179	0.00076608	581.3014959130027	71.998	0.65444	71.971	71.713	72.367	-0.027267					45	23	2	0	0	0	0.14786	1	18258	18258		31.268	0.6318	1	200060			17318	6895	9737	9738	22008	22008					0.012740121317847297
IYSIDFTRF	9	Unmodified	_IYSIDFTRF_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.2897338867188	2	581.300581	1160.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.287	1	71.262	70.762	71.762	-0.024872								0	0	0	0.039802	1	18100	18100		63.961	19.554	1				17319	6895	9737	9738	22009	22009					0.012740121317847297
IYSMSQEEH	9	Unmodified	_IYSMSQEEH_					0	0	0		ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.2392578125	2	562.239864	1122.46517	0.63452	0.00035675	-1.2455	-0.00070024	-0.61093	-0.00034349	562.2392962627337	77.271	1.2632	77.24	76.829	78.092	-0.031334					63	45	2	0	0	0	0.30623	1	19908	19908		7.9102	0	1	590080			17320	8612	9738	9739	22010	22010					-0.09115978293039007
IYSNSGLVIYF	11	Unmodified	_IYSNSGLVIYF_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|154|3|sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|154|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.19854736328125	3	425.892173	1274.65469	-0.028132	-1.1981E-05	2.736	0.0011653	2.7079	0.0011533	425.8939074849636	21.511	0.34548	21.462	21.316	21.661	-0.049377					16	11	2	0	0	0	0.3322	1	2912	2912		4.7159	1.7207	1	26171	+		17321	22745	9739	9740	22011	22011					0.028348369917694072
IYSPLKLVGK	10	Unmodified	_IYSPLKLVGK_					0	0	0			REV__ENST00000379697.7_1_X:19606566-19606731:-|nuORF	REV__ENST00000379697.7_1_X:19606566-19606731:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2603759765625	2	559.352617	1116.69068	0.30838	0.00017249	-0.47627	-0.0002664	-0.16789	-9.391E-05	559.3522968284531	49.507	0.30067	49.552	49.394	49.695	0.044888					19	10	2	0	0	0	0.31691	1	11438	11438		5.7319	5.2735	1	144730	+		17322	20538	9740	9741	22012	22012					0.1370033895927918
IYSPLKLVGK	10	Unmodified	_IYSPLKLVGK_					0	0	0			REV__ENST00000379697.7_1_X:19606566-19606731:-|nuORF	REV__ENST00000379697.7_1_X:19606566-19606731:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	559.352617	1116.69068	0.15983	8.9403E-05	-0.33871	-0.00018946	-0.17888	-0.00010006	559.3522523282314	49.52	0.37387	49.552	49.356	49.73	0.032043	0.014117	3.6329E-05	NaN	2.9952	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145790	+		17323	20538	9740	9741							0.1370033895927918
IYSQLETLI	9	Unmodified	_IYSQLETLI_					0	0	0		ENSG00000144589|ENST00000456909|STK11IP;ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENSG00000144589|ENST00000456909|STK11IP	ENSG00000144589|ENST00000456909|STK11IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3302612304688	2	540.30279	1078.59103	0.32591	0.00017609	0.26455	0.00014294	0.59046	0.00031903	540.3027959042657	76.217	0.81656	76.217	75.877	76.693	0					42	29	2	0	0	0	0.099099	1	19609	19609		55.503	9.8031	1	536210			17324	4596	9741	9742	22013	22013					0.054874765546856
IYSQLETLI	9	Unmodified	_IYSQLETLI_					0	0	0		ENSG00000144589|ENST00000456909|STK11IP;ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENSG00000144589|ENST00000456909|STK11IP	ENSG00000144589|ENST00000456909|STK11IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3302612304688	2	540.30279	1078.59103	0.3175	0.00017154	-0.17189	-9.2874E-05	0.1456	7.867E-05	540.3026461385773	76.177	0.73561	76.231	76.02	76.756	0.053413					41	25	2	0	0	0	0.099099	1	19591	19591		55.503	9.8031	1	784380			17325	4596	9741	9742	22014	22014					0.054874765546856
IYSQLETLI	9	Unmodified	_IYSQLETLI_					0	0	0		ENSG00000144589|ENST00000456909|STK11IP;ENST00000475396.5_1_2:220462865-220474366:+|nuORF	ENSG00000144589|ENST00000456909|STK11IP	ENSG00000144589|ENST00000456909|STK11IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3302612304688	2	540.30279	1078.59103	0.586	0.00031662	-0.17353	-9.376E-05	0.41247	0.00022286	540.3026919094989	76.234	0.69402	76.203	75.931	76.625	-0.031487					44	24	2	0	0	0	0.099099	1	19612	19612		55.503	9.8031	1	591050			17326	4596	9741	9742	22015	22015					0.054874765546856
IYSQTYFRF	9	Unmodified	_IYSQTYFRF_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.80712890625	2	612.806031	1223.59751	0.67111	0.00041126	-0.6128	-0.00037553	0.058315	3.5736E-05	612.8056510768823	60.632	0.54922	60.632	60.413	60.962	0					41	19	3	0	0	0	0.0026004	1	14818	14818		117.84	81.331	1	1488800			17327	3012	9742	9743	22016	22016					-0.005345854939832861
IYSQTYFRF	9	Unmodified	_IYSQTYFRF_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.805908203125	2	612.806031	1223.59751	0.62785	0.00038475	-0.83933	-0.00051435	-0.21147	-0.00012959	612.8054977019152	60.581	0.50126	60.678	60.424	60.925	0.096989					41	17	3	0	0	0	0.0026004	1	14845	14845		107.56	80.34	1	1151900			17328	3012	9742	9743	22017	22017					-0.005345854939832861
IYSQTYFRF	9	Unmodified	_IYSQTYFRF_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.8065795898438	2	612.806031	1223.59751	0.69063	0.00042322	-0.49476	-0.00030319	0.19587	0.00012003	612.8056087317502	60.693	0.48039	60.684	60.487	60.968	-0.0094566					41	17	3	0	0	0	8.9229E-05	1	14844	14844		151.48	105.78	1	1182700			17329	3012	9742	9743	22018	22018					-0.005345854939832861
IYSSALRLT	9	Unmodified	_IYSSALRLT_					0	0	0			REV__ENSG00000118526|ENST00000367882|TCF21	REV__ENSG00000118526|ENST00000367882|TCF21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.294921875	2	512.295299	1022.57605	0.35566	0.0001822	-1.8414	-0.00094335	-1.4858	-0.00076115	512.2946243294463	71.202	0.59303	71.202	70.989	71.582	0					41	20	3	0	0	0	0.17787	2	18134	18084;18134		26.884	2.8631	1	701000	+		17330	15018	9743	9744	22019;22020	22020					0.0656602947731244
IYSSALRLT	9	Unmodified	_IYSSALRLT_					0	0	0			REV__ENSG00000118526|ENST00000367882|TCF21	REV__ENSG00000118526|ENST00000367882|TCF21	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	512.295299	1022.57605	0.25441	0.00013033	-1.2576	-0.00064426	-1.0032	-0.00051393	512.2946753259968	71.144	0.52996	71.205	70.987	71.517	0.060783	-0.017396	0.00020706	NaN	26.884	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	824890	+		17331	15018	9743	9744							0.0656602947731244
IYSSALRLT	9	Unmodified	_IYSSALRLT_					0	0	0			REV__ENSG00000118526|ENST00000367882|TCF21	REV__ENSG00000118526|ENST00000367882|TCF21	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	512.295299	1022.57605	0.32551	0.00016676	-1.2419	-0.0006362	-0.91636	-0.00046945	512.2946955796148	71.285	0.57381	71.261	70.999	71.572	-0.024864	0.038004	0.00022316	NaN	26.884	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	774600	+		17332	15018	9743	9744							0.0656602947731244
IYSSEEDGL	9	Unmodified	_IYSSEEDGL_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7529296875	2	506.727112	1011.43967	0.27022	0.00013693	2.659	0.0013474	2.9292	0.0014843	506.72834914974413	79.938	0.40115	80	79.859	80.26	0.061417					19	14	2	0	0	0	0.24913	1	20797	20797		12.532	10.229	1	105160			17333	845	9744	9745	22021	22021					-0.0655912954384803
IYSSKTLEL	9	Unmodified	_IYSSKTLEL_					0	0	0		nc|ENSG00000115806|Q9H8Y8-2|GORASP2;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF	nc|ENSG00000115806|Q9H8Y8-2|GORASP2	nc|ENSG00000115806|Q9H8Y8-2|GORASP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7697143554688	2	527.294965	1052.57538	0.87669	0.00046228	-0.073155	-3.8574E-05	0.80354	0.0004237	527.2947688914069	45.727	0.49671	45.727	45.558	46.055	0					23	17	2	0	0	0	0.1558	1	10250	10250		41.956	13.469	1	283500			17334	2675	9745	9746	22022	22022					0.05119190037635235
IYSSKTLEL	9	Unmodified	_IYSSKTLEL_					0	0	0		nc|ENSG00000115806|Q9H8Y8-2|GORASP2;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF	nc|ENSG00000115806|Q9H8Y8-2|GORASP2	nc|ENSG00000115806|Q9H8Y8-2|GORASP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.769775390625	2	527.294965	1052.57538	0.68321	0.00036025	0.1003	5.2888E-05	0.78351	0.00041314	527.2947972066154	45.553	0.42366	45.612	45.31	45.734	0.059834					23	14	2	0	0	0	0.17696	1	10190	10190		36.506	5.8697	1	326580			17335	2675	9745	9746	22023	22023					0.05119190037635235
IYSSKTLEL	9	Unmodified	_IYSSKTLEL_					0	0	0		nc|ENSG00000115806|Q9H8Y8-2|GORASP2;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF	nc|ENSG00000115806|Q9H8Y8-2|GORASP2	nc|ENSG00000115806|Q9H8Y8-2|GORASP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7697143554688	2	527.294965	1052.57538	0.6429	0.000339	0.14432	7.6101E-05	0.78722	0.0004151	527.2948014466095	45.506	0.36858	45.571	45.384	45.753	0.065048					22	13	2	0	0	0	0.11234	1	10181	10181		51.63	9.7902	1	278370			17336	2675	9745	9746	22024	22024					0.05119190037635235
IYSSLFIID	9	Unmodified	_IYSSLFIID_					0	0	0			REV__ENST00000361271.7_1_10:17636302-17641322:-|nuORF	REV__ENST00000361271.7_1_10:17636302-17641322:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8057250976562	2	535.792058	1069.56956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.657	1	72.71	72.21	73.21	0.053833								0	0	0	0.20238	1	18524	18524		21.747	4.6601	1		+		17337	20278	9746	9747	22025	22025					0.03756091525951888
IYSSVLEYTL	10	Unmodified	_IYSSVLEYTL_					0	0	0		nc|ENSG00000174611|Q8NBH2-3|KY;ENSG00000174611|ENST00000423778|KY	nc|ENSG00000174611|Q8NBH2-3|KY	nc|ENSG00000174611|Q8NBH2-3|KY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.7328491210938	2	594.313354	1186.61216	0.53564	0.00031834	0.45707	0.00027164	0.99271	0.00058998	594.8154902428591	76.922	0.36456	76.922	76.725	77.09	0					18	13	2	0	0	0	0.21475	1	19822	19822		38.176	16.639	1	145090			17338	6807	9747	9748	22026	22026					0.02631441863513828
IYSSVLEYTL	10	Unmodified	_IYSSVLEYTL_					0	0	0		nc|ENSG00000174611|Q8NBH2-3|KY;ENSG00000174611|ENST00000423778|KY	nc|ENSG00000174611|Q8NBH2-3|KY	nc|ENSG00000174611|Q8NBH2-3|KY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8291625976562	2	594.313354	1186.61216	0.64913	0.00038579	0.76346	0.00045374	1.4126	0.00083952	594.3136053364639	76.892	0.23668	76.861	76.754	76.991	-0.031334					12	8	2	0	0	0	0.255	1	19837	19837		27.629	18.246	1	110770			17339	6807	9747	9748	22027	22027					0.02631441863513828
IYSTAFDYF	9	Unmodified	_IYSTAFDYF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000450651.5_1_22:21841260-21846319:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.7586059570312	2	563.758215	1125.50188	0.67528	0.0003807	-0.70448	-0.00039716	-0.029201	-1.6462E-05	563.7582219044695	77.873	3.0125	77.873	77.282	80.294	0					307	115	5	0	0	0	1.8194E-16	4	20054	20054;20102;20149;20196		205.82	165.87	1	19000000			17340	8538	9748	9749	22028;22029;22030;22031	22028					-0.05585358404869112
IYSTAFDYF	9	Unmodified	_IYSTAFDYF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000450651.5_1_22:21841260-21846319:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.7588500976562	2	563.758215	1125.50188	0.71527	0.00040324	-0.7061	-0.00039807	0.0091673	5.1682E-06	563.7582524149578	77.786	3.1771	77.841	77.208	80.385	0.05542					294	123	5	0	0	0	1.8194E-16	4	20075	20033;20075;20124;20175		205.82	160.12	1	20116000			17341	8538	9748	9749	22032;22033;22034;22035	22033					-0.05585358404869112
IYSTAFDYF	9	Unmodified	_IYSTAFDYF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000450651.5_1_22:21841260-21846319:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7589721679688	2	563.758215	1125.50188	0.76129	0.00042918	-0.69459	-0.00039158	0.066697	3.7601E-05	563.7582307029581	77.881	3.106	77.849	77.237	80.343	-0.031334					318	118	5	0	0	0	1.8194E-16	4	20093	20046;20093;20136;20189		205.82	154.19	1	20375000			17342	8538	9748	9749	22036;22037;22038;22039	22037					-0.05585358404869112
IYSTKLYRF	9	Unmodified	_IYSTKLYRF_					0	0	0		nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF;ENSG00000148925|ENST00000278174|BTBD10	nc|ENSG00000148925|Q9BSF8-2|BTBD10	nc|ENSG00000148925|Q9BSF8-2|BTBD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.8324584960938	2	595.832049	1189.64954	0.57357	0.00034175	-0.47634	-0.00028382	0.097229	5.7932E-05	595.8319662282016	44.357	0.79147	44.357	44.09	44.881	0					88	28	4	0	0	0	7.3453E-05	2	9847	9800;9847		145.13	91.813	1	2751500			17343	12751	9749	9750	22040;22041	22041					0.06230577919791358
IYSTKLYRF	9	Unmodified	_IYSTKLYRF_					0	0	0		nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF;ENSG00000148925|ENST00000278174|BTBD10	nc|ENSG00000148925|Q9BSF8-2|BTBD10	nc|ENSG00000148925|Q9BSF8-2|BTBD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.8321533203125	2	595.832049	1189.64954	0.53887	0.00032108	-0.25841	-0.00015397	0.28046	0.00016711	595.8320030393805	43.994	0.81748	44.071	43.79	44.608	0.077515					94	30	4	0	0	0	0.0016712	2	9695	9695;9746		114.2	70.429	1	2272100			17344	12751	9749	9750	22042;22043	22042					0.06230577919791358
IYSTKLYRF	9	Unmodified	_IYSTKLYRF_					0	0	0		nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF;ENSG00000148925|ENST00000278174|BTBD10	nc|ENSG00000148925|Q9BSF8-2|BTBD10	nc|ENSG00000148925|Q9BSF8-2|BTBD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.8323974609375	2	595.832049	1189.64954	0.38658	0.00023034	-0.16535	-9.852E-05	0.22123	0.00013182	595.8320828470603	43.96	0.86232	44.044	43.815	44.678	0.083996					92	31	4	0	0	0	0.0016712	2	9680	9680;9730		114.2	70.429	1	2865400			17345	12751	9749	9750	22044;22045	22044					0.06230577919791358
IYSTLLQNNI	10	Unmodified	_IYSTLLQNNI_					0	0	0		nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.3097534179688	2	589.824421	1177.63429	0.65432	0.00038594	-0.44562	-0.00026284	0.2087	0.0001231	589.8242388971529	65.93	0.38593	65.93	65.713	66.099	0					27	13	3	0	0	0	0.24437	1	16503	16503		27.223	8.8501	1	243700			17346	5812	9750	9751	22046	22046					0.052576663319541694
IYSTLLQNNI	10	Unmodified	_IYSTLLQNNI_					0	0	0		nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.3096923828125	2	589.824421	1177.63429	0.60646	0.0003577	-0.57629	-0.00033991	0.030172	1.7796E-05	589.8244109809734	65.778	0.43552	65.867	65.677	66.113	0.088875					24	15	2	0	0	0	0.31681	1	16464	16464		18.373	3.9677	1	185920			17347	5812	9750	9751	22047	22047					0.052576663319541694
IYSTLLQNNI	10	Unmodified	_IYSTLLQNNI_					0	0	0		nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.2744750976562	2	589.824421	1177.63429	0.50522	0.00029799	-0.20745	-0.00012236	0.29777	0.00017563	589.824380775147	65.867	0.39912	65.856	65.694	66.093	-0.011337					23	13	2	0	0	0	0.21213	1	16456	16456		47.594	21.326	1	199340			17348	5812	9750	9751	22048	22048					0.052576663319541694
IYSTNTQTKK	10	Unmodified	_IYSTNTQTKK_					0	0	0		nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;FANCD2|p.H550Sfs*5|1|0.06|ENSG00000144554|chr3:10052488-10052489|-/T|frameshift_variant;ENST00000438698.1_1_3:10029596-10035934:+|nuORF	nc|ENSG00000144554|Q9BXW9-3|FANCD2	nc|ENSG00000144554|Q9BXW9-3|FANCD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.8010864257812	2	592.319502	1182.62445	0.19758	0.00011703	1.5643	0.00092654	1.7618	0.0010436	592.3204998618983	59.721	0.50405	59.721	59.445	59.949	0					43	17	3	0	0	0	0.2593	1	14590	14590		25.399	1.6095	1	1100700			17349	4592	9751	9752	22049	22049					0.04044478326545686
IYSTPLPEKF	10	Unmodified	_IYSTPLPEKF_					0	0	0		ENSG00000109787|ENST00000261438|KLF3;nc|ENSG00000109787|P57682-2|KLF3	ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8246459960938	2	597.823889	1193.63323	0.84681	0.00050625	0.27906	0.00016683	1.1259	0.00067307	597.8238727159528	54.748	0.97568	54.748	54.374	55.35	0					91	35	4	0	0	0	0.0014715	3	13016	13016;13068;13133		114.5	66.748	1	3268700			17350	2272	9752	9753	22050;22051;22052	22050					0.044154519630410505
IYSTPLPEKF	10	Unmodified	_IYSTPLPEKF_					0	0	0		ENSG00000109787|ENST00000261438|KLF3;nc|ENSG00000109787|P57682-2|KLF3	ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8245849609375	2	597.823889	1193.63323	0.7942	0.00047479	0.8227	0.00049183	1.6169	0.00096662	597.8238206009811	54.675	0.88052	54.738	54.459	55.339	0.063206					102	32	6	0	0	0	0.0034473	2	13004	13004;13055		100.71	55.009	1	3429200			17351	2272	9752	9753	22053;22054	22053					0.044154519630410505
IYSTPLPEKF	10	Unmodified	_IYSTPLPEKF_					0	0	0		ENSG00000109787|ENST00000261438|KLF3;nc|ENSG00000109787|P57682-2|KLF3	ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.2493896484375	2	597.823889	1193.63323	0.74905	0.0004478	0.36857	0.00022034	1.1176	0.00066814	597.8239868296529	54.835	0.74152	54.819	54.522	55.264	-0.015923					81	27	4	0	0	0	0.22874	1	12984	12984		37.075	20.926	1	3614900			17352	2272	9752	9753	22055	22055					0.044154519630410505
IYSTQASILSL	11	Unmodified	_IYSTQASILSL_					0	0	0		ENST00000539508.5_1_9:13136054-13190160:-|nuORF;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.7611694335938	2	598.332079	1194.6496	0.40136	0.00024015	0.62324	0.00037291	1.0246	0.00061305	598.3320289802409	73.177	0.46624	73.231	72.98	73.447	0.053833					23	16	2	0	0	0	0.32526	1	18714	18714		16.566	5.0712	1	204540			17353	2115	9753	9754	22056	22056					0.06006533129152558
IYSTQASILSL	11	Unmodified	_IYSTQASILSL_					0	0	0		ENST00000539508.5_1_9:13136054-13190160:-|nuORF;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	ENST00000539508.5_1_9:13136054-13190160:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.7611083984375	2	598.332079	1194.6496	0.47001	0.00028122	0.44858	0.0002684	0.9186	0.00054963	598.3322921721143	73.205	0.46135	73.176	73.042	73.503	-0.029305					24	16	2	0	0	0	0.32423	1	18744	18744		18.721	2.5721	1	146130			17354	2115	9753	9754	22057	22057					0.06006533129152558
IYSTTLWHL	9	Unmodified	_IYSTTLWHL_					0	0	0		ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENSG00000004897|ENST00000066544|CDC27	ENSG00000004897|ENST00000066544|CDC27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2797241210938	2	567.303124	1132.5917	0.51339	0.00029125	-0.16072	-9.1178E-05	0.35267	0.00020007	567.3028674611835	65.916	0.60324	65.916	65.608	66.211	0					48	21	3	0	0	0	0.065123	1	16497	16497		64.236	40.216	1	313770			17355	319	9754	9755	22058	22058					0.030703159943641367
IYSTTLWHL	9	Unmodified	_IYSTTLWHL_					0	0	0		ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENSG00000004897|ENST00000066544|CDC27	ENSG00000004897|ENST00000066544|CDC27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2796020507812	2	567.303124	1132.5917	0.60716	0.00034444	-0.11291	-6.4054E-05	0.49425	0.00028039	567.3030623831554	65.771	0.54417	65.86	65.653	66.197	0.088882					28	19	2	0	0	0	0.065123	1	16401	16401		64.236	43.783	1	391750			17356	319	9754	9755	22059	22059					0.030703159943641367
IYSTTLWHL	9	Unmodified	_IYSTTLWHL_					0	0	0		ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENSG00000004897|ENST00000066544|CDC27	ENSG00000004897|ENST00000066544|CDC27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.279541015625	2	567.303124	1132.5917	0.40022	0.00022704	0.042403	2.4055E-05	0.44262	0.0002511	567.3030373206078	65.89	0.58694	65.879	65.53	66.117	-0.011337					32	20	2	0	0	0	0.11486	1	16425	16425		48.346	27.892	1	298580			17357	319	9754	9755	22060	22060					0.030703159943641367
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.8297729492188	2	637.830037	1273.64552	0.24722	0.00015768	-0.3348	-0.00021355	-0.087582	-5.5863E-05	637.8299422737081	60.322	3.2205	60.322	60.035	63.256	0					293	119	5	0	0	0	4.0398E-34	11	14693	14693;14736;14787;14839;14889;14933;14987;15044;15221;15275;15475		229.53	147.62	1	46944000			17358	4787	9755	9756	22061;22062;22063;22064;22065;22066;22067;22068;22069;22070;22071	22061					0.0196448842607424
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.8112182617188	2	637.830037	1273.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.835	1	86.835	86.335	87.335	0								0	0	0	0.36982	1	22872	22872		3.8763	0.27984	1				17359	4787	9755	9756	22072	22072					0.0196448842607424
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.8299560546875	2	637.830037	1273.64552	0.21695	0.00013838	-0.33166	-0.00021154	-0.11471	-7.3167E-05	637.8299241635265	60.22	3.3196	60.315	59.99	63.31	0.095089					268	121	5	0	0	0	4.0398E-34	15	14691	14642;14691;14739;14787;14833;14884;14951;15029;15080;15153;15202;15252;15419;15468;15628		229.53	156.33	1	38721000			17360	4787	9755	9756	22073;22074;22075;22076;22077;22078;22079;22080;22081;22082;22083;22084;22085;22086;22087	22074					0.0196448842607424
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.8346557617188	2	637.830037	1273.64552	0.63913	0.00040765	3.3028	0.0021066	3.942	0.0025143	637.8322547501034	67.797	1.0315	67.875	67.434	68.465	0.078041					60	36	2	0	0	0	0.25774	1	17045	17045		26.021	5.5671	1	245420			17361	4787	9755	9756	22088	22088					0.0196448842607424
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.8303833007812	2	637.830037	1273.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.801	1	64.894	64.394	65.394	0.09288								0	0	0	0.18559	1	16121	16121		35.08	17.967	1				17362	4787	9755	9756	22089	22089					0.0196448842607424
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.8301391601562	2	637.830037	1273.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.907	1	72.961	72.461	73.461	0.053833								0	0	0	0.33504	1	18601	18601		11.518	4.7947	1				17363	4787	9755	9756	22090	22090					0.0196448842607424
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.8123168945312	2	637.830037	1273.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.73	1	83.808	83.308	84.308	0.077095								0	0	0	0.36839	1	21910	21910		4.1895	0.59301	1				17364	4787	9755	9756	22091	22091					0.0196448842607424
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.7718505859375	2	637.830037	1273.64552	0.5618	0.00035834	0.13433	8.5679E-05	0.69613	0.00044401	637.8297966488432	68.9	1.9331	68.972	68.484	70.418	0.071938					87	69	2	0	0	0	0.32596	1	17369	17369		15.739	2.6962	1	144270			17365	4787	9755	9756	22092	22092					0.0196448842607424
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.8302612304688	2	637.830037	1273.64552	0.62108	0.00039614	-0.61021	-0.00038921	0.010872	6.9348E-06	637.8297792377148	60.348	3.5045	60.337	59.997	63.501	-0.011486					322	129	5	0	0	0	4.0398E-34	12	14731	14682;14731;14781;14824;14874;14924;14975;15028;15088;15204;15256;15431		229.53	138.45	1	49024000			17366	4787	9755	9756	22093;22094;22095;22096;22097;22098;22099;22100;22101;22102;22103;22104	22094					0.0196448842607424
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.830810546875	2	637.830037	1273.64552	0.41038	0.00026175	-0.11209	-7.1495E-05	0.29829	0.00019026	637.8299066869383	67.122	0.61342	67.106	66.921	67.534	-0.016304					30	20	2	0	0	0	0.28246	1	16831	16831		23.801	10.759	1	138410			17367	4787	9755	9756	22105	22105					0.0196448842607424
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.8299560546875	2	637.830037	1273.64552	0.58419	0.00037261	2.701	0.0017228	3.2852	0.0020954	637.831916337991	67.953	0.83902	67.936	67.534	68.373	-0.016296					45	29	2	0	0	0	0.31831	1	17182	17182		20.581	8.0494	1	293000			17368	4787	9755	9756	22106	22106					0.0196448842607424
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.8117065429688	2	637.830037	1273.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.344	1	86.335	85.835	86.835	-0.0090027								0	0	0	0.35928	1	22704	22704		6.1918	0.46	1				17369	4787	9755	9756	22107	22107					0.0196448842607424
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.8115844726562	2	637.830037	1273.64552	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.684	1	86.678	86.178	87.178	-0.0056229								0	0	0	0.37796	1	22808	22808		2.086	0.24177	1				17370	4787	9755	9756	22108	22108					0.0196448842607424
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	637.830037	1273.64552	0.50007	0.00031896	-0.63622	-0.0004058	-0.13615	-8.684E-05	637.8296685448263	66.691	0.98191	66.691	65.899	66.881	0	-0.20241	-0.00046598	NaN	23.801	52	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140020			17371	4787	9755	9756							0.0196448842607424
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	637.830037	1273.64552	0.51234	0.00032679	0.060592	3.8648E-05	0.57293	0.00036543	637.830058271621	66.8	0.92224	66.884	66.659	67.582	0.083832	-0.0098907	0.00042291	NaN	23.801	49	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197400			17372	4787	9755	9756							0.0196448842607424
IYSVGAFENF	10	Unmodified	_IYSVGAFENF_					0	0	0		ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.3033447265625	2	573.776939	1145.53933	0.30353	0.00017416	0.44743	0.00025673	0.75096	0.00043088	573.7771329608819	74.259	0.37779	74.311	74.176	74.554	0.052361					18	12	2	0	0	0	0.29112	1	18974	18974		24.991	14.167	1	410470			17373	7410	9756	9757	22109	22109					-0.027622671392464326
IYSVGAFENF	10	Unmodified	_IYSVGAFENF_					0	0	0		ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.7767944335938	2	573.776939	1145.53933	0.33622	0.00019292	0.28056	0.00016098	0.61678	0.00035389	573.7769905949282	74.4	0.43372	74.37	74.18	74.614	-0.030655					20	14	2	0	0	0	0.0082636	1	19066	19066		84.522	59.123	1	394820			17374	7410	9756	9757	22110	22110					-0.027622671392464326
IYSYGFATI	9	Unmodified	_IYSYGFATI_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.76416015625	2	517.7633	1033.51205	0.44297	0.00022935	0.71365	0.0003695	1.1566	0.00059886	517.7636590421743	71.923	1.0864	71.923	71.664	72.75	0					103	39	5	0	0	0	2.2223E-07	1	18318	18318		171.47	125.45	1	2418500			17375	1368	9757	9758	22111	22111					-0.0033675067961667082
IYSYGFATI	9	Unmodified	_IYSYGFATI_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7642822265625	2	517.7633	1033.51205	0.3995	0.00020685	0.31944	0.00016539	0.71894	0.00037224	517.7637188037147	71.899	1.384	71.956	71.628	73.012	0.05658					125	50	4	0	0	0	5.2996E-06	2	18289	18289;18338		156.16	111.75	1	2289700			17376	1368	9757	9758	22112;22113	22112					-0.0033675067961667082
IYSYGFATI	9	Unmodified	_IYSYGFATI_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7639770507812	2	517.7633	1033.51205	0.37211	0.00019267	0.57287	0.00029661	0.94498	0.00048928	517.7636149062423	71.996	0.97416	71.969	71.685	72.659	-0.027275					107	34	5	0	0	0	2.2223E-07	2	18302	18302;18352		171.47	116.69	1	2834400			17377	1368	9757	9758	22114;22115	22114					-0.0033675067961667082
IYTCVLHLL	9	Unmodified	_IYTCVLHLL_					0	0	0		ENSG00000103544|ENST00000417362|VPS35L;nc|ENSG00000103544|Q7Z3J2-2|VPS35L	ENSG00000103544|ENST00000417362|VPS35L	ENSG00000103544|ENST00000417362|VPS35L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.317626953125	2	537.804445	1073.59434	0.87771	0.00047204	1.4347	0.00077156	2.3124	0.0012436	537.8052881244512	37.487	0.67142	37.487	37.124	37.795	0					42	23	2	0	0	0	0.1669	1	7775	7775		28.487	3.0875	1	768490			17378	1842	9758	9759	22116	22116					0.06048448127694428
IYTDLQETL	9	Unmodified	_IYTDLQETL_					0	0	0			REV__ENSG00000099910|ENST00000328879|KLHL22	REV__ENSG00000099910|ENST00000328879|KLHL22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.8342895507812	2	548.282054	1094.54956	0.57577	0.00031568	0.045148	2.4754E-05	0.62091	0.00034044	548.281948226987	68.763	1.1356	68.835	68.563	69.698	0.071938					69	40	3	0	0	0	0.12329	1	17347	17347		49.554	0	1	388270	+		17379	14142	9759	9760	22117	22117					0.006062957953417936
IYTDMGRFTI	10	Oxidation (M)	_IYTDM(Oxidation (M))GRFTI_		IYTDM(1)GRFTI		IYTDM(140)GRFTI	0	0	1		ENSG00000105402|ENST00000263354|NAPA;nc|ENSG00000125814|Q9H115-2|NAPB;ENSG00000125814|ENST00000377026|NAPB;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;ENST00000602082.5_1_19:47996374-48018112:-|nuORF;ENST00000596892.5_1_19:47996374-48000675:-|nuORF;ENST00000602174.5_1_19:47996374-48018112:-|nuORF;ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000597778.5_1_19:47996282-47999001:-|nuORF	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.8027954101562	2	616.802631	1231.59071	0.21563	0.000133	-2.7198	-0.0016775	-2.5041	-0.0015445	616.8027739797038	52.294	0.96463	52.294	51.941	52.906	0					97	34	4	0	0	0	2.8213E-05	3	12274	12225;12274;12296		139.38	90.403	1	1816300			17380	1977	9760	9761	22118;22119;22120	22119		243			-0.015822664368215555
IYTDMGRFTI	10	Oxidation (M)	_IYTDM(Oxidation (M))GRFTI_		IYTDM(1)GRFTI		IYTDM(140)GRFTI	0	0	1		ENSG00000105402|ENST00000263354|NAPA;nc|ENSG00000125814|Q9H115-2|NAPB;ENSG00000125814|ENST00000377026|NAPB;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;ENST00000602082.5_1_19:47996374-48018112:-|nuORF;ENST00000596892.5_1_19:47996374-48000675:-|nuORF;ENST00000602174.5_1_19:47996374-48018112:-|nuORF;ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000597778.5_1_19:47996282-47999001:-|nuORF	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.8027954101562	2	616.802631	1231.59071	0.18388	0.00011342	-2.8197	-0.0017392	-2.6358	-0.0016258	616.8026288486831	52.217	0.92228	52.267	51.926	52.848	0.050575					91	33	4	0	0	0	2.8213E-05	3	12206	12206;12255;12264		139.38	101.2	1	1737200			17381	1977	9760	9761	22121;22122;22123	22121		243			-0.015822664368215555
IYTDMGRFTI	10	Oxidation (M)	_IYTDM(Oxidation (M))GRFTI_		IYTDM(1)GRFTI		IYTDM(150)GRFTI	0	0	1		ENSG00000105402|ENST00000263354|NAPA;nc|ENSG00000125814|Q9H115-2|NAPB;ENSG00000125814|ENST00000377026|NAPB;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;ENST00000602082.5_1_19:47996374-48018112:-|nuORF;ENST00000596892.5_1_19:47996374-48000675:-|nuORF;ENST00000602174.5_1_19:47996374-48018112:-|nuORF;ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000597778.5_1_19:47996282-47999001:-|nuORF	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.8027954101562	2	616.802631	1231.59071	0.073649	4.5427E-05	-2.5341	-0.001563	-2.4605	-0.0015176	616.8027484944372	52.418	0.89762	52.418	52.06	52.958	-0.00080872					98	32	4	0	0	0	1.0144E-05	3	12277	12277;12329;12345		150.62	104.92	1	2047100			17382	1977	9760	9761	22124;22125;22126	22124		243			-0.015822664368215555
IYTDPRLLI	9	Unmodified	_IYTDPRLLI_					0	0	0			REV__nc|ENSG00000077097|Q02880-2|TOP2B;REV__nc|ENSG00000131747|P11388-4|TOP2A	REV__nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.3251342773438	2	552.326599	1102.63865	0.4755	0.00026263	-0.67405	-0.0003723	-0.19855	-0.00010966	552.3266772676917	67.933	3.0191	68.011	67.628	70.647	0.078041					315	108	6	0	0	0	0.14076	1	17251	17251		32.305	1.0371	1	41901000	+		17383	13837;22987	9761	9762	22127	22127					0.09143175545546
IYTDPRLLI	9	Unmodified	_IYTDPRLLI_					0	0	0			REV__nc|ENSG00000077097|Q02880-2|TOP2B;REV__nc|ENSG00000131747|P11388-4|TOP2A	REV__nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.3257446289062	2	552.326599	1102.63865	0.36372	0.00020089	-0.5529	-0.00030538	-0.18918	-0.00010449	552.326746665405	67.997	3.004	67.981	67.644	70.648	-0.016296					325	107	6	0	0	0	0.14076	1	17291	17291		32.305	1.0371	1	42102000	+		17384	13837;22987	9761	9762	22128	22128					0.09143175545546
IYTFPHASF	9	Unmodified	_IYTFPHASF_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7698364257812	2	541.768917	1081.52328	0.56932	0.00030844	0.67029	0.00036314	1.2396	0.00067158	541.7694125196349	58.396	1.9661	58.396	57.904	59.87	0					184	68	5	0	0	0	4.5832000000000005E-33	5	14157	14066;14113;14157;14201;14248		267.04	61.221	1	24534000			17385	2390	9762	9763	22129;22130;22131;22132;22133	22131					-0.014219285855006092
IYTFPHASF	9	Unmodified	_IYTFPHASF_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7698974609375	2	541.768917	1081.52328	0.54552	0.00029555	0.67094	0.00036349	1.2165	0.00065904	541.7694446180757	58.183	2.2712	58.269	57.738	60.009	0.085621					199	81	4	0	0	0	4.5832000000000005E-33	6	14088	13997;14044;14088;14136;14196;14241		267.04	61.221	1	26159000			17386	2390	9762	9763	22134;22135;22136;22137;22138;22139	22136					-0.014219285855006092
IYTFPHASF	9	Unmodified	_IYTFPHASF_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7698364257812	2	541.768917	1081.52328	0.91636	0.00049645	0.43779	0.00023718	1.3541	0.00073363	541.7692387191413	58.486	2.0343	58.472	57.931	59.965	-0.014271					196	72	5	0	0	0	3.1560000000000002E-24	4	14166	14118;14166;14217;14270		243.74	55.811	1	27180000			17387	2390	9762	9763	22140;22141;22142;22143	22141					-0.014219285855006092
IYTFSVLQF	9	Unmodified	_IYTFSVLQF_					0	0	0			REV__ENSG00000183185|ENST00000472788|GABRR3	REV__ENSG00000183185|ENST00000472788|GABRR3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2911987304688	2	559.30005	1116.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.871	1	68.942	68.442	69.442	0.071938								0	0	0	0.22666	1	17370	17370		13.906	0.39817	1		+		17388	18244	9763	9764	22144	22144					0.03191797762860915
IYTFTATFT	9	Unmodified	_IYTFTATFT_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7667846679688	2	532.768583	1063.52261	0.56801	0.00030262	-2.7013	-0.0014392	-2.1333	-0.0011366	532.766803751113	71.366	0.55594	71.34	71.158	71.714	-0.025772					37	19	3	0	0	0	0.11517	1	18108	18108		36.044	1.9418	1	759940			17389	8483	9764	9765	22145	22145					-0.006607680251818238
IYTIINSI	8	Unmodified	_IYTIINSI_					0	0	0		nc|ENSG00000133657|Q9H7F0-2|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.T754Ifs*18|1|0.35|ENSG00000133657|chr3:194431877-194431878|-/TCAA|frameshift_variant	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.7736511230469	2	468.773668	935.532783	0.10655	4.9948E-05	0.0048055	2.2527E-06	0.11135	5.22E-05	468.7735143452411	71.897	0.63106	71.897	71.664	72.295	0					50	22	3	0	0	0	0.0013851	2	18321	18264;18321		139.14	50.235	1	561490			17390	3721	9765	9766	22146;22147	22147					0.06243839700039189
IYTIINSI	8	Unmodified	_IYTIINSI_					0	0	0		nc|ENSG00000133657|Q9H7F0-2|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.T754Ifs*18|1|0.35|ENSG00000133657|chr3:194431877-194431878|-/TCAA|frameshift_variant	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7738342285156	2	468.773668	935.532783	0.17275	8.098E-05	0.19367	9.0788E-05	0.36642	0.00017177	468.7735296226283	71.844	0.78236	71.9	71.654	72.436	0.056572					62	28	3	0	0	0	0.079438	1	18343	18343		64.236	10.661	1	518910			17391	3721	9765	9766	22148	22148					0.06243839700039189
IYTIINSI	8	Unmodified	_IYTIINSI_					0	0	0		nc|ENSG00000133657|Q9H7F0-2|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.T754Ifs*18|1|0.35|ENSG00000133657|chr3:194431877-194431878|-/TCAA|frameshift_variant	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.773681640625	2	468.773668	935.532783	0.3016	0.00014138	-0.098161	-4.6015E-05	0.20344	9.5367E-05	468.7734038627837	71.926	0.6489	71.899	71.685	72.334	-0.027275					49	23	3	0	0	0	0.00035924	3	18305	18279;18305;18371		152.41	63.509	1	477060			17392	3721	9765	9766	22149;22150;22151	22150					0.06243839700039189
IYTKIMDLI	9	Oxidation (M)	_IYTKIM(Oxidation (M))DLI_		IYTKIM(1)DLI		IYTKIM(110)DLI	0	0	1		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.314697265625	2	563.314843	1124.61513	0.29036	0.00016356	-0.50427	-0.00028406	-0.21391	-0.0001205	563.3144924560321	60.352	0.87069	60.447	60.077	60.947	0.095089					97	31	4	0	0	0	0.0016724	1	14789	14789		114.19	73.947	1	5569600			17393	6756	9766	9767	22152	22152		772			0.057809937166666714
IYTKIMDLI	9	Oxidation (M)	_IYTKIM(Oxidation (M))DLI_		IYTKIM(1)DLI		IYTKIM(130)DLI	0	0	1		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.314697265625	2	563.314843	1124.61513	0.40841	0.00023007	-0.83422	-0.00046993	-0.4258	-0.00023986	563.3144599565098	60.475	0.77803	60.463	60.108	60.886	-0.011486					82	28	4	0	0	0	0.0008224	2	14799	14799;14817		125.04	85.08	1	5199500			17394	6756	9766	9767	22153;22154	22153		772			0.057809937166666714
IYTKIMDLI	9	Oxidation (M)	_IYTKIM(Oxidation (M))DLI_					0	0	1		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.314843	1124.61513	0.34605	0.00019494	-0.55573	-0.00031305	-0.20968	-0.00011812	563.3145121897073	60.455	0.72992	60.455	60.15	60.88	0	1.4601E-05	6.8682E-05	NaN	125.04	79	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5513100			17395	6756	9766	9767				772			0.057809937166666714
IYTKVTAF	8	Unmodified	_IYTKVTAF_					0	0	0		ENSG00000126218|ENST00000375559|F10	ENSG00000126218|ENST00000375559|F10	ENSG00000126218|ENST00000375559|F10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.76824951171875	2	471.768386	941.522219	0.046362	2.1872E-05	0.22837	0.00010774	0.27473	0.00012961	471.7683009047751	43.68	0.46499	43.68	43.467	43.932	0					41	16	3	0	0	0	0.071344	1	9625	9625		68.081	23.674	1	522140			17396	3262	9767	9768	22155	22155					0.04911857045601664
IYTKVTAF	8	Unmodified	_IYTKVTAF_					0	0	0		ENSG00000126218|ENST00000375559|F10	ENSG00000126218|ENST00000375559|F10	ENSG00000126218|ENST00000375559|F10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7682189941406	2	471.768386	941.522219	0.27193	0.00012829	0.066644	3.144E-05	0.33857	0.00015973	471.7683160967854	43.526	0.57078	43.604	43.319	43.89	0.077515					34	20	2	0	0	0	0.029711	2	9575	9532;9575		88.954	24.718	1	603210			17397	3262	9767	9768	22156;22157	22157					0.04911857045601664
IYTKVTAF	8	Unmodified	_IYTKVTAF_					0	0	0		ENSG00000126218|ENST00000375559|F10	ENSG00000126218|ENST00000375559|F10	ENSG00000126218|ENST00000375559|F10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.76824951171875	2	471.768386	941.522219	0.32501	0.00015333	-0.070222	-3.3129E-05	0.25479	0.0001202	471.76821603720293	43.499	0.48882	43.583	43.327	43.815	0.083996					39	17	3	0	0	0	0.029711	1	9532	9532		88.954	34.18	1	634930			17398	3262	9767	9768	22158	22158					0.04911857045601664
IYTLIHYI	8	Unmodified	_IYTLIHYI_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000533733.5_1_11:108158320-108160529:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2969970703125	2	518.29731	1034.58007	0.46551	0.00024127	-0.46886	-0.00024301	-0.0033475	-1.735E-06	518.2967246482657	65.524	1.8299	65.524	65.218	67.048	0					112	65	4	0	0	0	0.0083969	1	16349	16349		120.86	53.821	1	820690			17399	62	9768	9769	22159	22159					0.06416118971037577
IYTLIHYI	8	Unmodified	_IYTLIHYI_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000533733.5_1_11:108158320-108160529:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2972412109375	2	518.29731	1034.58007	0.0754	3.908E-05	0.10729	5.5609E-05	0.18269	9.4688E-05	518.2971050281428	65.44	1.1675	65.528	65.164	66.332	0.088882					83	42	3	0	0	0	0.0083969	1	16305	16305		120.86	53.821	1	967440			17400	62	9768	9769	22160	22160					0.06416118971037577
IYTLIHYI	8	Unmodified	_IYTLIHYI_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000533733.5_1_11:108158320-108160529:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.297119140625	2	518.29731	1034.58007	0.34891	0.00018084	-0.041722	-2.1625E-05	0.30718	0.00015921	518.2970835991098	65.502	0.85046	65.49	65.122	65.972	-0.011337					76	30	4	0	0	0	0.0016215	2	16340	16340;16390		136.08	69.045	1	935240			17401	62	9768	9769	22161;22162	22161					0.06416118971037577
IYTLIHYIN	9	Unmodified	_IYTLIHYIN_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000533733.5_1_11:108158320-108160529:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.83740234375	2	575.318774	1148.623	0.27456	0.00015796	-0.24073	-0.0001385	0.03383	1.9463E-05	575.3186268698705	63.219	0.73159	63.211	62.86	63.592	-0.0085526					62	26	3	0	0	0	0.23783	1	15644	15644		18.135	0	1	461230			17402	62	9769	9770	22163	22163					0.054628890284675435
IYTLNLNEL	9	Unmodified	_IYTLNLNEL_					0	0	0		nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3;ENSG00000012983|ENST00000682126|MAP4K5;ENST00000554990.5_1_14:50886739-50915587:-|nuORF	nc|ENSG00000011566|Q8IVH8-3|MAP4K3;ENSG00000012983|ENST00000682126|MAP4K5	ENSG00000012983|ENST00000682126|MAP4K5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.801025390625	2	546.800414	1091.58628	0.7341	0.0004014	0.51287	0.00028044	1.247	0.00068184	546.8005692745264	77.431	0.72572	77.431	77.204	77.93	0					58	26	3	0	0	0	3.0646E-11	1	20005	20005		193.29	89.941	1	913060			17403	458;447	9770	9771	22164	22164					0.04414592411899321
IYTLNLNEL	9	Unmodified	_IYTLNLNEL_					0	0	0		nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3;ENSG00000012983|ENST00000682126|MAP4K5;ENST00000554990.5_1_14:50886739-50915587:-|nuORF	nc|ENSG00000011566|Q8IVH8-3|MAP4K3;ENSG00000012983|ENST00000682126|MAP4K5	ENSG00000012983|ENST00000682126|MAP4K5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8008422851562	2	546.800414	1091.58628	0.96974	0.00053026	-0.11785	-6.4442E-05	0.85189	0.00046581	546.8003755367841	77.501	0.93487	77.469	77.186	78.121	-0.031334					61	33	3	0	0	0	3.0646E-11	1	20003	20003		193.29	86.107	1	1003300			17404	458;447	9770	9771	22165	22165					0.04414592411899321
IYTLNLNEL	9	Unmodified	_IYTLNLNEL_					0	0	0		nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3;ENSG00000012983|ENST00000682126|MAP4K5;ENST00000554990.5_1_14:50886739-50915587:-|nuORF	nc|ENSG00000011566|Q8IVH8-3|MAP4K3;ENSG00000012983|ENST00000682126|MAP4K5	ENSG00000012983|ENST00000682126|MAP4K5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	546.800414	1091.58628	0.84318	0.00046105	0.14914	8.155E-05	0.99232	0.0005426	546.8005035935463	77.438	0.79639	77.494	77.18	77.977	0.055412	0.029053	1.1336E-05	NaN	193.29	45	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1163700			17405	458;447	9770	9771							0.04414592411899321
IYTMIYRNL	9	Oxidation (M)	_IYTM(Oxidation (M))IYRNL_		IYTM(1)IYRNL		IYTM(110)IYRNL	0	0	1		nc|ENSG00000135679|Q00987-8|MDM2;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2	nc|ENSG00000135679|Q00987-8|MDM2	nc|ENSG00000135679|Q00987-8|MDM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8159790039062	2	601.815541	1201.61653	0.75984	0.00045728	0.33045	0.00019887	1.0903	0.00065615	601.8156074865901	51.063	0.79536	51.063	50.686	51.481	0					64	29	3	0	0	0	0.0016712	2	11897	11897;11953		114.2	77.695	1	825430			17406	3893	9771	9772	22166;22167	22166		485			0.023786278054330978
IYTMIYRNL	9	Oxidation (M)	_IYTM(Oxidation (M))IYRNL_		IYTM(1)IYRNL		IYTM(110)IYRNL	0	0	1		nc|ENSG00000135679|Q00987-8|MDM2;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2	nc|ENSG00000135679|Q00987-8|MDM2	nc|ENSG00000135679|Q00987-8|MDM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.8159790039062	2	601.815541	1201.61653	0.64918	0.00039069	0.4232	0.00025469	1.0724	0.00064537	601.8156543542259	51.151	0.82022	51.198	50.741	51.561	0.046574					75	30	3	0	0	0	0.0016712	2	11899	11899;11948		114.2	76.05	1	787040			17407	3893	9771	9772	22168;22169	22168		485			0.023786278054330978
IYTMIYRNL	9	Oxidation (M)	_IYTM(Oxidation (M))IYRNL_		IYTM(1)IYRNL		IYTM(130)IYRNL	0	0	1		nc|ENSG00000135679|Q00987-8|MDM2;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2	nc|ENSG00000135679|Q00987-8|MDM2	nc|ENSG00000135679|Q00987-8|MDM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.8162231445312	2	601.815541	1201.61653	0.54719	0.00032931	0.67733	0.00040763	1.2245	0.00073694	601.8158123506503	51.028	0.82985	51.037	50.757	51.587	0.0095673					78	31	3	0	0	0	0.00078391	1	11943	11943		125.53	93.224	1	871640			17408	3893	9771	9772	22170	22170		485			0.023786278054330978
IYTMRIEDF	9	Unmodified	_IYTMRIEDF_					0	0	0			REV__nc|ENSG00000113580|P04150-16|NR3C1	REV__nc|ENSG00000113580|P04150-16|NR3C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.2929077148438	2	594.291899	1186.56925	0.57137	0.00033956	1.2924	0.00076804	1.8637	0.0011076	594.2926341712964	54.065	0.55802	54.128	53.852	54.41	0.063202					49	20	3	0	0	0	0.19747	1	12840	12840		24.021	2.2739	1	1116700	+		17409	14814	9772	9773	22171	22171					-0.016576514655525898
IYTMRIEDF	9	Unmodified	_IYTMRIEDF_					0	0	0			REV__nc|ENSG00000113580|P04150-16|NR3C1	REV__nc|ENSG00000113580|P04150-16|NR3C1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	594.291899	1186.56925	0.57137	0.00033956	1.2924	0.00076804	1.8637	0.0011076	594.2926341712964	54.065	0.55802	54.128	53.852	54.41	0.063202	-0.036865	0.00023922	NaN	24.021	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1116700	+		17410	14814	9772	9773							-0.016576514655525898
IYTNEFKIF	9	Unmodified	_IYTNEFKIF_					0	0	0			REV__ENSG00000157881|ENST00000378466|PANK4	REV__ENSG00000157881|ENST00000378466|PANK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.1818237304688	2	587.810782	1173.60701	0.47842	0.00028122	-0.19844	-0.00011665	0.27998	0.00016457	587.8106248616049	72.443	0.6235	72.499	72.144	72.767	0.05658					48	22	3	0	0	0	0.11397	1	18473	18473		49.933	0	1	247110	+		17411	16798	9773	9774	22172	22172					0.027151827915531612
IYTNGYIIF	9	Unmodified	_IYTNGYIIF_					0	0	0		ENSG00000244234|ENST00000463439|GMCL2	ENSG00000244234|ENST00000463439|GMCL2	ENSG00000244234|ENST00000463439|GMCL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.291748046875	2	552.292225	1102.5699	0.46185	0.00025508	0.28534	0.00015759	0.74719	0.00041267	552.2923644121183	72.326	0.9436	72.298	72.068	73.011	-0.027275					60	33	2	0	0	0	0.21303	1	18512	18512		21.747	0.20967	1	993430			17412	8568	9774	9775	22173	22173					0.022715112457944997
IYTPIFNEY	9	Unmodified	_IYTPIFNEY_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.287353515625	2	580.28714	1158.55973	0.36039	0.00020913	0.021076	1.223E-05	0.38146	0.00022136	580.2871793135589	72.502	1.7878	72.502	72.132	73.92	0					203	64	5	0	0	0	9.4165E-24	5	18469	18469;18516;18559;18611;18732		231.73	185.71	1	10184000			17413	1794	9775	9776	22174;22175;22176;22177;22178	22174					-0.013210964794325264
IYTPIFNEY	9	Unmodified	_IYTPIFNEY_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.286865234375	2	580.28714	1158.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.372	1	80.372	79.872	80.872	0								0	0	0	0.2362	1	20886	20886		10.824	2.9138	1				17414	1794	9775	9776	22179	22179					-0.013210964794325264
IYTPIFNEY	9	Unmodified	_IYTPIFNEY_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.2875366210938	2	580.28714	1158.55973	0.44486	0.00025815	-0.066313	-3.8481E-05	0.37855	0.00021967	580.2871297424527	72.44	1.8661	72.496	72.116	73.982	0.056572					209	67	5	0	0	0	2.4232E-17	6	18488	18392;18438;18488;18539;18589;18646		223.81	177.79	1	9597300			17415	1794	9775	9776	22180;22181;22182;22183;22184;22185	22182					-0.013210964794325264
IYTPIFNEY	9	Unmodified	_IYTPIFNEY_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2872924804688	2	580.28714	1158.55973	0.41177	0.00023895	-0.059143	-3.432E-05	0.35263	0.00020463	580.2871541144268	72.504	1.683	72.474	72.115	73.798	-0.029305					200	60	5	0	0	0	4.8913000000000006E-24	6	18514	18421;18472;18514;18557;18609;18678		240.41	194.39	1	10503000			17416	1794	9775	9776	22186;22187;22188;22189;22190;22191	22188					-0.013210964794325264
IYTPIYVVM	9	Unmodified	_IYTPIYVVM_					0	0	0			REV__ENSG00000124564|ENST00000397060|SLC17A3	REV__ENSG00000124564|ENST00000397060|SLC17A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2913208007812	2	549.798829	1097.5831	0.30022	0.00016506	0.31203	0.00017155	0.61225	0.00033661	549.7985882120527	33.276	0.79848	33.343	33.081	33.879	0.066704					36	28	2	0	0	0	0.25811	1	6360	6360		5.2307	5.2307	1	359430	+		17417	15239	9776	9777	22192	22192					0.03821626033550274
IYTQCFFHAF	10	Unmodified	_IYTQCFFHAF_					0	0	0			REV__ENSG00000119915|ENST00000370005|ELOVL3	REV__ENSG00000119915|ENST00000370005|ELOVL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.1985778808594	3	426.198831	1275.57467	-0.034409	-1.4665E-05	-1.0139	-0.00043212	-1.0483	-0.00044679	426.1985591804792	21.49	0.78917	21.49	21.228	22.017	0					89	28	5	0	0	0	0.30656	3	2830	2830;2881;2929		19.626	4.6688	1	346600	+		17418	15064	9777	9778	22193;22194;22195	22193					-0.05209927883106502
IYTQCFFHAF	10	Unmodified	_IYTQCFFHAF_					0	0	0			REV__ENSG00000119915|ENST00000370005|ELOVL3	REV__ENSG00000119915|ENST00000370005|ELOVL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.1985168457031	3	426.198831	1275.57467	-0.040715	-1.7353E-05	-1.0581	-0.00045098	-1.0989	-0.00046833	426.1984751520037	21.549	0.74051	21.5	21.207	21.948	-0.049377					77	26	4	0	0	0	0.26354	2	2863	2863;2912		24.882	5.2556	1	393870	+		17419	15064	9777	9778	22196;22197	22196					-0.05209927883106502
IYTQCFFHAF	10	Unmodified	_IYTQCFFHAF_					0	0	0			REV__ENSG00000119915|ENST00000370005|ELOVL3	REV__ENSG00000119915|ENST00000370005|ELOVL3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	426.198831	1275.57467	-0.034409	-1.4665E-05	-1.0139	-0.00043212	-1.0483	-0.00044679	426.1985591804792	21.49	0.78917	21.49	21.228	22.017	0	0.0048243	-7.6203E-06	NaN	24.882	89	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346600	+		17420	15064	9777	9778							-0.05209927883106502
IYTQCFFHAF	10	Unmodified	_IYTQCFFHAF_					0	0	0			REV__ENSG00000119915|ENST00000370005|ELOVL3	REV__ENSG00000119915|ENST00000370005|ELOVL3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	426.198831	1275.57467	-0.040715	-1.7353E-05	-1.0581	-0.00045098	-1.0989	-0.00046833	426.1984751520037	21.549	0.74051	21.5	21.207	21.948	-0.049377	0.014846	-6.4192E-05	NaN	24.882	77	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393870	+		17421	15064	9777	9778							-0.05209927883106502
IYTQPCPF	8	Unmodified	_IYTQPCPF_					0	0	0		ENST00000220592.9_2_8:141572654-141595341:-|nuORF	ENST00000220592.9_2_8:141572654-141595341:-|nuORF	ENST00000220592.9_2_8:141572654-141595341:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.73114013671875	2	484.730946	967.447339	0.25788	0.000125	1.3364	0.00064781	1.5943	0.00077282	484.73124667283133	68.43	1.0277	68.43	68.202	69.229	0					72	37	3	0	0	0	0.19197	1	17218	17218		44.407	7.9409	1	955570			17422	8833	9778	9779	22198	22198					-0.037686487572727856
IYTQPCPF	8	Unmodified	_IYTQPCPF_					0	0	0		ENST00000220592.9_2_8:141572654-141595341:-|nuORF	ENST00000220592.9_2_8:141572654-141595341:-|nuORF	ENST00000220592.9_2_8:141572654-141595341:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7310485839844	2	484.730946	967.447339	0.16734	8.1114E-05	0.76801	0.00037228	0.93535	0.00045339	484.73123363385054	68.344	1.1032	68.416	68.134	69.237	0.071938					67	40	3	0	0	0	0.082568	1	17197	17197		63.563	29.376	1	773910			17423	8833	9778	9779	22199	22199					-0.037686487572727856
IYTQPCPF	8	Unmodified	_IYTQPCPF_					0	0	0		ENST00000220592.9_2_8:141572654-141595341:-|nuORF	ENST00000220592.9_2_8:141572654-141595341:-|nuORF	ENST00000220592.9_2_8:141572654-141595341:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7314453125	2	484.730946	967.447339	0.3548	0.00017198	0.39785	0.00019285	0.75264	0.00036483	484.7310942068525	68.411	0.97799	68.392	68.148	69.126	-0.019157					45	34	2	0	0	0	0.072895	1	17221	17221		67.344	33.157	1	772600			17424	8833	9778	9779	22200	22200					-0.037686487572727856
IYTRLLPAL	9	Unmodified	_IYTRLLPAL_					0	0	0		nc|ENSG00000243989|Q03154-2|ACY1;nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3318481445312	2	530.331685	1058.64882	0.57112	0.00030288	-0.43452	-0.00023044	0.1366	7.2442E-05	530.3315198221143	64.748	2.7334	64.748	64.288	67.022	0					261	98	5	0	0	0	0.0024096	3	16088	16039;16088;16137		106.94	66.701	1	9692300			17425	8564	9779	9780	22201;22202;22203	22202					0.12183783270734239
IYTRLLPAL	9	Unmodified	_IYTRLLPAL_					0	0	0		nc|ENSG00000243989|Q03154-2|ACY1;nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3318481445312	2	530.331685	1058.64882	0.49577	0.00026292	-0.31302	-0.00016601	0.18275	9.6916E-05	530.3315817065912	64.633	2.6014	64.726	64.26	66.861	0.09288					248	95	4	0	0	0	0.0024096	3	16047	16047;16089;16130		106.94	66.701	1	9461300			17426	8564	9779	9780	22204;22205;22206	22204					0.12183783270734239
IYTRLLPAL	9	Unmodified	_IYTRLLPAL_					0	0	0		nc|ENSG00000243989|Q03154-2|ACY1;nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	nc|ENSG00000243989|Q03154-2|ACY1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3319091796875	2	530.331685	1058.64882	0.49293	0.00026142	-0.34354	-0.00018219	0.14939	7.9226E-05	530.331552498754	64.756	3.3905	64.747	64.26	67.651	-0.0095291					250	122	5	0	0	0	0.0024096	4	16074	16028;16074;16120;16162		106.94	66.701	1	9412800			17427	8564	9779	9780	22207;22208;22209;22210	22208					0.12183783270734239
IYTSSVNRL	9	Unmodified	_IYTSSVNRL_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.791748046875	2	526.790381	1051.56621	0.62069	0.00032697	0.53657	0.00028266	1.1573	0.00060963	526.7910908441635	36.167	2.293	36.167	35.856	38.149	0					211	82	5	0	0	0	3.6949E-07	4	7300	7300;7325;7368;7458		165.72	100.49	1	41105000			17428	7453	9780	9781	22211;22212;22213;22214	22211					0.04248841471940068
IYTSSVNRL	9	Unmodified	_IYTSSVNRL_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7908935546875	2	526.790381	1051.56621	0.58945	0.00031052	0.49707	0.00026185	1.0865	0.00057237	526.7910499882179	36.044	2.5678	36.127	35.823	38.391	0.082359					206	93	5	0	0	0	3.6949E-07	4	7328	7242;7283;7328;7423		165.72	100.49	1	43516000			17429	7453	9780	9781	22215;22216;22217;22218	22217					0.04248841471940068
IYTSSVNRL	9	Unmodified	_IYTSSVNRL_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.791748046875	2	526.790381	1051.56621	0.73962	0.00038962	0.40272	0.00021215	1.1423	0.00060177	526.7910380917084	36.035	2.4929	36.121	35.79	38.283	0.08625					220	90	5	0	0	0	3.6949E-07	4	7241	7241;7291;7344;7426		165.72	100.49	1	44970000			17430	7453	9780	9781	22219;22220;22221;22222	22219					0.04248841471940068
IYTTLVGLL	9	Unmodified	_IYTTLVGLL_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.8049621582031	2	496.804968	991.595384	0.58503	0.00029065	-0.33392	-0.0001659	0.25111	0.00012475	496.8047370031247	86.191	0.42642	86.191	86.041	86.467	0					31	16	3	0	0	0	0.20344	1	22678	22678		23.148	10.617	1	184630			17431	4016	9781	9782	22223	22223					0.09924985768248007
IYTTLVGLL	9	Unmodified	_IYTTLVGLL_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.80462646484375	2	496.804968	991.595384	0.49697	0.0002469	-0.14904	-7.4044E-05	0.34793	0.00017285	496.80499152472754	86.159	0.53718	86.243	85.962	86.499	0.084251					28	20	2	0	0	0	0.1669	1	22672	22672		28.487	3.813	1	182800			17432	4016	9781	9782	22224	22224					0.09924985768248007
IYTTLVGLL	9	Unmodified	_IYTTLVGLL_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.8053283691406	2	496.804968	991.595384	0.52753	0.00026208	0.012538	6.2288E-06	0.54007	0.00026831	496.8049117616598	86.328	0.38749	86.319	86.023	86.41	-0.0090027					23	14	2	0	0	0	0.20344	1	22692	22692		23.148	10.617	1	169000			17433	4016	9781	9782	22225	22225					0.09924985768248007
IYTTNFKVT	9	Unmodified	_IYTTNFKVT_					0	0	0			REV__ENSG00000173269|ENST00000372027|MMRN2	REV__ENSG00000173269|ENST00000372027|MMRN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.30908203125	2	543.795132	1085.57571	0.88834	0.00048307	0.488	0.00026537	1.3763	0.00074845	543.7953573106116	50.803	0.32356	50.803	50.654	50.978	0					19	11	2	0	0	0	0.24913	1	11812	11812		4.3292	0	1	108510	+		17434	17775	9782	9783	22226	22226					0.03634609757477847
IYTVLFERL	9	Unmodified	_IYTVLFERL_					0	0	0		ENST00000574710.1_1_17:4841038-4842521:-|nuORF;ENSG00000108528|ENST00000225665|SLC25A11;nc|ENSG00000108528|Q02978-2|SLC25A11	ENST00000574710.1_1_17:4841038-4842521:-|nuORF	ENST00000574710.1_1_17:4841038-4842521:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3351440429688	2	577.334424	1152.6543	0.21861	0.00012621	-0.017329	-1.0005E-05	0.20128	0.00011621	577.3345220810291	70.016	1.0633	70.016	69.76	70.823	0					84	38	4	0	0	0	0.00012746	2	17704	17704;17750		136.39	22.19	1	1510100			17435	2192	9783	9784	22227;22228	22227					0.08407462062541526
IYTVLFERL	9	Unmodified	_IYTVLFERL_					0	0	0		ENST00000574710.1_1_17:4841038-4842521:-|nuORF;ENSG00000108528|ENST00000225665|SLC25A11;nc|ENSG00000108528|Q02978-2|SLC25A11	ENST00000574710.1_1_17:4841038-4842521:-|nuORF	ENST00000574710.1_1_17:4841038-4842521:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3346557617188	2	577.334424	1152.6543	0.28476	0.0001644	-0.083074	-4.7961E-05	0.20169	0.00011644	577.3344772231858	69.999	0.98026	70.065	69.797	70.777	0.066048					85	34	4	0	0	0	0.0016724	1	17740	17740		114.19	21.021	1	1425500			17436	2192	9783	9784	22229	22229					0.08407462062541526
IYTVLFERL	9	Unmodified	_IYTVLFERL_					0	0	0		ENST00000574710.1_1_17:4841038-4842521:-|nuORF;ENSG00000108528|ENST00000225665|SLC25A11;nc|ENSG00000108528|Q02978-2|SLC25A11	ENST00000574710.1_1_17:4841038-4842521:-|nuORF	ENST00000574710.1_1_17:4841038-4842521:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3346557617188	2	577.334424	1152.6543	0.26456	0.00015274	-0.09903	-5.7173E-05	0.16553	9.5566E-05	577.3344703893109	70.09	0.93805	70.068	69.755	70.693	-0.022087					81	33	4	0	0	0	0.0016724	2	17751	17702;17751		114.19	21.021	1	1233700			17437	2192	9783	9784	22230;22231	22231					0.08407462062541526
IYTYYASV	8	Unmodified	_IYTYYASV_					0	0	0			REV__ENSG00000149403|ENST00000527524|GRIK4	REV__ENSG00000149403|ENST00000527524|GRIK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7687072753906	2	490.242201	978.469849	0.51819	0.00025404	1.7809	0.00087309	2.2991	0.0011271	490.24267067866936	77.186	0.66827	77.186	76.858	77.526	0					65	24	4	0	0	0	0.34046	1	19832	19832		14.582	4.3983	1	385350	+		17438	16461	9784	9785	22232	22232					-0.02024726087995532
IYTYYASV	8	Unmodified	_IYTYYASV_					0	0	0			REV__ENSG00000149403|ENST00000527524|GRIK4	REV__ENSG00000149403|ENST00000527524|GRIK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.76873779296875	2	490.242201	978.469849	0.66361	0.00032533	0.72088	0.0003534	1.3845	0.00067873	490.24251236967854	77.18	0.46985	77.149	76.96	77.43	-0.031334					29	16	2	0	0	0	0.34046	1	19880	19880		14.582	1.5392	1	262980	+		17439	16461	9784	9785	22233	22233					-0.02024726087995532
IYVATVETL	9	Unmodified	_IYVATVETL_					0	0	0		ENST00000471702.2_2_3:132339980-132400782:-|nuORF;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-3|ACAD11;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.26397705078125	2	504.784233	1007.55391	0.5449	0.00027506	-0.1619	-8.1723E-05	0.38301	0.00019334	504.78410424015624	64.069	1.5216	64.069	63.746	65.268	0					158	55	4	0	0	0	3.4037E-06	1	15996	15996		154.46	57.389	1	6304600			17440	8519	9785	9786	22234	22234					0.05043805008892832
IYVATVETL	9	Unmodified	_IYVATVETL_					0	0	0		ENST00000471702.2_2_3:132339980-132400782:-|nuORF;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-3|ACAD11;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2635803222656	2	504.784233	1007.55391	0.61229	0.00030908	-1.857	-0.00093736	-1.2447	-0.00062829	504.7828381108889	65.791	0.10809	65.791	65.713	65.821	0					5	3	2	0	0	0	0.22596	1	16440	16440		15.847	0	1	57982			17441	8519	9785	9786	22235	22235					0.05043805008892832
IYVATVETL	9	Unmodified	_IYVATVETL_					0	0	0		ENST00000471702.2_2_3:132339980-132400782:-|nuORF;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-3|ACAD11;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7845764160156	2	504.784233	1007.55391	0.45227	0.0002283	-0.11847	-5.98E-05	0.3338	0.0001685	504.7841065205358	63.971	1.4463	64.064	63.618	65.064	0.092884					151	48	5	0	0	0	1.9541E-11	1	15833	15833		196.94	87.311	1	5584600			17442	8519	9785	9786	22236	22236					0.05043805008892832
IYVATVETL	9	Unmodified	_IYVATVETL_					0	0	0		ENST00000471702.2_2_3:132339980-132400782:-|nuORF;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-3|ACAD11;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7844543457031	2	504.784233	1007.55391	0.54015	0.00027266	-0.17894	-9.0325E-05	0.36122	0.00018234	504.78410109724945	64.045	1.4055	64.036	63.718	65.124	-0.0095291					158	51	5	0	0	0	1.9541E-11	1	15893	15893		196.94	87.311	1	6082200			17443	8519	9785	9786	22237	22237					0.05043805008892832
IYVCLIFLK	9	Unmodified	_IYVCLIFLK_					0	0	0			REV__ENST00000356628.3_1_9:140195350-140195905:-|nuORF	REV__ENST00000356628.3_1_9:140195350-140195905:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7957153320312	2	556.332839	1110.65112	0.014777	8.2212E-06	-0.41968	-0.00023348	-0.40491	-0.00022526	556.3326783802207	29.736	0.28627	29.75	29.623	29.91	0.013474					15	9	2	0	0	0	0.25879	1	5334	5334		4.756	0	1	67274	+		17444	20201	9786	9787	22238	22238					0.1002249568418847
IYVCVCLKF	9	Unmodified	_IYVCVCLKF_					0	0	0		ENST00000511348.1_1_4:100870420-100870579:-|nuORF;ENST00000511203.1_1_4:100869836-100870579:-|nuORF	ENST00000511348.1_1_4:100870420-100870579:-|nuORF	ENST00000511348.1_1_4:100870420-100870579:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.33447265625	2	544.287574	1086.56059	0.58264	0.00031713	0.88873	0.00048373	1.4714	0.00080085	544.2881951189056	46.056	1.4646	46.056	45.238	46.703	0					113	53	3	0	0	0	0.24311	1	10508	10508		16.942	7.5949	1	5488200			17445	11382	9787	9788	22239	22239					0.02077703364284389
IYVDRQIF	8	Unmodified	_IYVDRQIF_					0	0	0			REV__ENST00000394628.2_1_10:79492938-79493973:+|nuORF	REV__ENST00000394628.2_1_10:79492938-79493973:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2720947265625	2	527.290017	1052.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.745	1	52.796	52.296	53.296	0.050575								0	0	0	0.34229	1	12404	12404		18.135	0	1		+		17446	20623	9788	9789	22240	22240					0.04130046822888289
IYVFVGRLF	9	Unmodified	_IYVFVGRLF_					0	0	0		ENSG00000100739|ENST00000216629|BDKRB1	ENSG00000100739|ENST00000216629|BDKRB1	ENSG00000100739|ENST00000216629|BDKRB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.294921875	2	557.326402	1112.63825	0.38228	0.00021306	-0.84931	-0.00047334	-0.46702	-0.00026029	557.3257142305407	72.015	1.3356	72.015	71.491	72.827	0					111	48	3	0	0	0	0.19319	1	18178	18178		28.173	15.642	1	310140			17447	1626	9789	9790	22241	22241					0.0864380061632346
IYVFVGRLF	9	Unmodified	_IYVFVGRLF_					0	0	0		ENSG00000100739|ENST00000216629|BDKRB1	ENSG00000100739|ENST00000216629|BDKRB1	ENSG00000100739|ENST00000216629|BDKRB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2955932617188	2	557.326402	1112.63825	0.44026	0.00024537	-0.95838	-0.00053413	-0.51812	-0.00028876	557.3259170108122	71.853	1.279	71.91	71.537	72.816	0.056572					104	46	3	0	0	0	0.19319	1	18177	18177		28.173	15.642	1	328790			17448	1626	9789	9790	22242	22242					0.0864380061632346
IYVGRVKSF	9	Unmodified	_IYVGRVKSF_					0	0	0		nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1	nc|ENSG00000080839|P28749-2|RBL1	nc|ENSG00000080839|P28749-2|RBL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.781982421875	2	534.813659	1067.61277	0.6006	0.00032121	-2.6699	-0.0014279	-2.0693	-0.0011067	534.8118418126122	35.984	0.39909	35.984	35.8	36.2	0					18	14	2	0	0	0	0.21538	1	7258	7258		20.415	4.5674	1	144140			17449	1168	9790	9791	22243	22243					0.08166326093896714
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8057861328125	2	560.8055	1119.59645	0.31416	0.00017618	-0.2187	-0.00012265	0.095469	5.3539E-05	560.805507095603	70.982	6.891	70.982	70.605	77.496	0					507	248	5	0	0	0	6.124200000000001E-25	10	18042	18001;18042;18086;18128;18320;18454;18503;18555;18603;19067		248.62	159.19	1	35306000			17450	6127	9791	9792	22244;22245;22246;22247;22248;22249;22250;22251;22252;22253	22245					0.04143200137127678
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.253662109375	2	560.8055	1119.59645	0.38657	0.00021679	0.49334	0.00027667	0.87991	0.00049346	560.8055610352924	82.301	0.48502	82.301	82.166	82.651	0					25	17	2	0	0	0	0.19839	1	21537	21537		28.487	4.4663	1	108610			17451	6127	9791	9792	22254	22254					0.04143200137127678
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3063354492188	2	560.8055	1119.59645	0.43811	0.0002457	0.86056	0.00048261	1.2987	0.00072831	561.3079886034999	88.163	0.35395	88.163	88.049	88.403	0					23	18	2	0	0	0	0.25066	1	23296	23296		11.64	2.2929	1	69104			17452	6127	9791	9792	22255	22255					0.04143200137127678
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2796020507812	2	560.8055	1119.59645	0.38458	0.00021567	1.1863	0.00066526	1.5708	0.00088093	560.8055583887552	89.471	0.49137	89.471	89.153	89.645	0					42	26	2	0	0	0	0.25066	1	23635	23635		11.64	2.2572	1	47909			17453	6127	9791	9792	22256	22256					0.04143200137127678
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8056640625	2	560.8055	1119.59645	0.35608	0.00019969	-0.28184	-0.00015806	0.074236	4.1632E-05	560.8054369565423	70.941	4.1936	71.002	70.546	74.74	0.060783					399	150	5	0	0	0	8.2725E-18	8	17982	17982;18025;18071;18110;18442;18492;18543;18990		225.63	136.21	1	32894000			17454	6127	9791	9792	22257;22258;22259;22260;22261;22262;22263;22264	22257					0.04143200137127678
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.805419921875	2	560.8055	1119.59645	0.25934	0.00014544	0.48563	0.00027235	0.74497	0.00041778	561.3071940386893	76.135	1.6096	76.188	75.702	77.312	0.053413					88	57	2	0	0	0	0.062246	1	19660	19660		48.346	10.195	1	255610			17455	6127	9791	9792	22265	22265					0.04143200137127678
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.7469482421875	2	560.8055	1119.59645	0.48558	0.00027232	-0.25833	-0.00014487	0.22725	0.00012745	560.8052224012963	85.756	0.85677	85.84	85.486	86.343	0.084251					47	31	2	0	0	0	0.2451	1	22510	22510		15.847	3.3156	1	114580			17456	6127	9791	9792	22266	22266					0.04143200137127678
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2544555664062	2	560.8055	1119.59645	0.3548	0.00019898	0.65394	0.00036673	1.0087	0.00056571	561.3076240862895	74.574	1.7829	74.626	74.405	76.188	0.052361					99	64	2	0	0	0	0.1524	1	19104	19104		39.957	14.558	1	747260			17457	6127	9791	9792	22267	22267					0.04143200137127678
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8055419921875	2	560.8055	1119.59645	0.35111	0.00019691	-0.25472	-0.00014285	0.096391	5.4057E-05	560.8053934731238	71.05	3.8445	71.026	70.549	74.393	-0.024872					366	138	5	0	0	0	6.124200000000001E-25	7	18014	18014;18065;18115;18477;18528;18577;18583		248.62	159.19	1	25269000			17458	6127	9791	9792	22268;22269;22270;22271;22272;22273;22274	22268					0.04143200137127678
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2890014648438	2	560.8055	1119.59645	0.4596	0.00025775	0.31865	0.0001787	0.77825	0.00043645	561.307226661049	74.706	1.996	74.674	74.294	76.29	-0.031479					105	72	2	0	0	0	0.14099	1	19617	19617		42.095	17.421	1	417260			17459	6127	9791	9792	22275	22275					0.04143200137127678
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.8055	1119.59645	0.25934	0.00014544	0.48563	0.00027235	0.74497	0.00041778	561.3071940386893	76.135	1.6096	76.188	75.702	77.312	0.053413	0	0	NaN	48.346	88	57	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255610			17460	6127	9791	9792							0.04143200137127678
IYVHNPVF	8	Unmodified	_IYVHNPVF_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7502136230469	2	494.766178	987.517802	0.33294	0.00016473	-0.32733	-0.00016195	0.0056119	2.7766E-06	494.7658879451634	67.162	0.11871	67.24	67.15	67.269	0.078041					6	3	2	0	0	0	0.34046	1	16827	16827		14.582	0	1	46945			17461	2042	9792	9793	22276	22276					0.023543926227148404
IYVIGLQEL	9	Unmodified	_IYVIGLQEL_					0	0	0		ENSG00000132376|ENST00000421807|INPP5K	ENSG00000132376|ENST00000421807|INPP5K	ENSG00000132376|ENST00000421807|INPP5K	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3079223632812	2	524.307875	1046.6012	0.37942	0.00019893	-0.57709	-0.00030257	-0.19767	-0.00010364	524.307256524232	82.073	2.0381	82.142	81.779	83.817	0.068993					106	82	2	0	0	0	0.074331	1	21378	21378		61.357	32.871	1	571260			17462	3626	9793	9794	22277	22277					0.07976084279880524
IYVIGLQEL	9	Unmodified	_IYVIGLQEL_					0	0	0		ENSG00000132376|ENST00000421807|INPP5K	ENSG00000132376|ENST00000421807|INPP5K	ENSG00000132376|ENST00000421807|INPP5K	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.307861328125	2	524.307875	1046.6012	0.56365	0.00029553	-0.88418	-0.00046358	-0.32053	-0.00016806	524.3071207371529	82.108	1.5368	82.084	81.77	83.307	-0.02404					94	61	3	0	0	0	0.051692	1	21427	21427		52.268	30.522	1	488670			17463	3626	9793	9794	22278	22278					0.07976084279880524
IYVISAETF	9	Unmodified	_IYVISAETF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.7767333984375	2	521.776408	1041.53826	0.4972	0.00025943	-0.23058	-0.00012031	0.26662	0.00013912	521.7761779088629	71.333	2.6146	71.333	70.989	73.604	0					220	94	4	0	0	0	8.7544E-17	4	18104	18057;18104;18155;18200		216.59	138.6	1	9690900			17464	2725	9794	9795	22279;22280;22281;22282	22280					0.019155184918417945
IYVISAETF	9	Unmodified	_IYVISAETF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.7764282226562	2	521.776408	1041.53826	0.40296	0.00021025	-0.16651	-8.6883E-05	0.23644	0.00012337	521.7762152634004	71.286	2.9047	71.346	70.827	73.732	0.060783					212	105	4	0	0	0	8.7544E-17	4	18094	18055;18094;18140;18194		216.59	138.6	1	10023000			17465	2725	9794	9795	22283;22284;22285;22286	22284					0.019155184918417945
IYVISAETF	9	Unmodified	_IYVISAETF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.7764282226562	2	521.776408	1041.53826	0.50587	0.00026395	-0.1383	-7.2159E-05	0.36758	0.00019179	521.7762153484975	71.36	2.8917	71.335	70.856	73.748	-0.025146					238	104	4	0	0	0	8.7544E-17	4	18130	18086;18130;18173;18221		216.59	138.6	1	9622600			17466	2725	9794	9795	22287;22288;22289;22290	22288					0.019155184918417945
IYVISAETF	9	Unmodified	_IYVISAETF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2847290039062	2	521.776408	1041.53826	0.61806	0.00032249	0.097244	5.074E-05	0.7153	0.00037323	521.7762238379388	79.206	0.54071	79.177	78.954	79.495	-0.028931					37	22	2	0	0	0	0.25202	1	20567	20567		10.824	0.75	1	109950			17467	2725	9794	9795	22291	22291					0.019155184918417945
IYVIVTRNVF	10	Unmodified	_IYVIVTRNVF_					0	0	0		ENST00000422321.5_1_10:22856588-22898637:-|nuORF;nc|ENSG00000150867|P48426-2|PIP4K2A;ENSG00000150867|ENST00000376573|PIP4K2A	ENST00000422321.5_1_10:22856588-22898637:-|nuORF	ENST00000422321.5_1_10:22856588-22898637:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.780517578125	2	612.360973	1222.70739	0.53219	0.00032589	-0.83055	-0.00050859	-0.29836	-0.0001827	612.360458796589	64.29	0.35504	64.29	64.158	64.513	0					21	12	2	0	0	0	0.30039	1	16001	16001		23.801	15.646	1	249120			17468	4926	9795	9796	22292	22292					0.10494839845205206
IYVIVTRNVF	10	Unmodified	_IYVIVTRNVF_					0	0	0		ENST00000422321.5_1_10:22856588-22898637:-|nuORF;nc|ENSG00000150867|P48426-2|PIP4K2A;ENSG00000150867|ENST00000376573|PIP4K2A	ENST00000422321.5_1_10:22856588-22898637:-|nuORF	ENST00000422321.5_1_10:22856588-22898637:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.7808837890625	2	612.360973	1222.70739	0.43617	0.00026709	-0.81211	-0.00049731	-0.37594	-0.00023021	612.3603039192722	64.241	0.38713	64.334	64.142	64.53	0.09288					24	13	3	0	0	0	0.28187	1	15924	15924		23.801	15.891	1	185630			17469	4926	9795	9796	22293	22293					0.10494839845205206
IYVIVTRNVF	10	Unmodified	_IYVIVTRNVF_					0	0	0		ENST00000422321.5_1_10:22856588-22898637:-|nuORF;nc|ENSG00000150867|P48426-2|PIP4K2A;ENSG00000150867|ENST00000376573|PIP4K2A	ENST00000422321.5_1_10:22856588-22898637:-|nuORF	ENST00000422321.5_1_10:22856588-22898637:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.78076171875	2	612.360973	1222.70739	0.46572	0.00028519	-0.88562	-0.00054232	-0.4199	-0.00025713	612.3604911737505	64.323	0.34262	64.313	64.152	64.495	-0.0095291					20	12	2	0	0	0	0.26049	1	15955	15955		35.612	21.207	1	196310			17470	4926	9795	9796	22294	22294					0.10494839845205206
IYVKATNSK	9	Unmodified	_IYVKATNSK_					0	0	0			REV__nc|ENSG00000150275|Q96QU1-6|PCDH15	REV__nc|ENSG00000150275|Q96QU1-6|PCDH15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2953491210938	2	512.295299	1022.57605	0.25441	0.00013033	-1.2576	-0.00064426	-1.0032	-0.00051393	512.2946753259968	71.144	0.52996	71.205	70.987	71.517	0.060783					32	18	2	0	0	0	0.21303	1	18116	18116		21.747	0	1	824890	+		17471	16491	9796	9797	22295	22295					0.06566029477335178
IYVKGTFLF	9	Unmodified	_IYVKGTFLF_					0	0	0		ENST00000528828.1_1_8:38133161-38137268:-|nuORF	ENST00000528828.1_1_8:38133161-38137268:-|nuORF	ENST00000528828.1_1_8:38133161-38137268:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.81591796875	2	544.312961	1086.61137	0.46584	0.00025356	0.13105	7.1332E-05	0.59689	0.00032489	544.8150939119064	91.235	0.47406	91.235	91.188	91.662	0					60	37	2	0	0	0	0.22883	1	24220	24220		19.439	8.6395	1	589730			17472	11590	9797	9798	22296	22296					0.07152692005138306
IYVLPMLTI	9	Oxidation (M)	_IYVLPM(Oxidation (M))LTI_		IYVLPM(1)LTI		IYVLPM(150)LTI	0	0	1		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8148193359375	2	539.814479	1077.6144	0.63245	0.00034141	0.078949	4.2618E-05	0.7114	0.00038402	539.8143909294363	87.943	1.4277	87.943	87.537	88.965	0					175	70	4	0	0	0	2.3185E-05	2	23209	23209;23256		153.26	71.398	1	1820500			17473	3726	9798	9799	22297;22298	22297		467			0.07870199067610884
IYVLPMLTI	9	Oxidation (M)	_IYVLPM(Oxidation (M))LTI_		IYVLPM(1)LTI		IYVLPM(150)LTI	0	0	1		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.814697265625	2	539.814479	1077.6144	0.52388	0.0002828	0.080233	4.3311E-05	0.60411	0.00032611	539.8144388831337	87.843	1.4331	87.932	87.484	88.917	0.089203					193	70	4	0	0	0	2.3185E-05	4	23178	23135;23178;23223;23271		153.26	71.398	1	1605400			17474	3726	9798	9799	22299;22300;22301;22302	22300		467			0.07870199067610884
IYVLPMLTI	9	Oxidation (M)	_IYVLPM(Oxidation (M))LTI_		IYVLPM(1)LTI		IYVLPM(140)LTI	0	0	1		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8147583007812	2	539.814479	1077.6144	0.62077	0.0003351	0.16698	9.0138E-05	0.78775	0.00042524	539.814416031728	87.957	1.1913	87.955	87.532	88.724	-0.0028381					165	60	4	0	0	0	0.00012008	1	23212	23212		137.59	55.721	1	1621700			17475	3726	9798	9799	22303	22303		467			0.07870199067610884
IYVMESDDT	9	Unmodified	_IYVMESDDT_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.7295532226562	2	536.728797	1071.44304	0.4101	0.00022011	0.27164	0.0001458	0.68174	0.00036591	536.7293524321088	58.83	1.4579	58.922	58.446	59.904	0.091305					165	51	5	0	0	0	0.26879	1	14200	14200		13.508	0.97634	1	7150000			17476	3486	9799	9800	22304	22304					-0.08982202761490043
IYVNNKLYK	9	Unmodified	_IYVNNKLYK_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.8139038085938	2	577.832049	1153.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.623	1	65.612	65.112	66.112	-0.011337								0	0	0	0.23367	1	16370	16370		11.64	1.5664	1				17477	615	9800	9801	22305	22305					0.07886577919794036
IYVPDIRNVF	10	Unmodified	_IYVPDIRNVF_					0	0	0		ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.3428955078125	2	618.342781	1234.67101	0.44616	0.00027588	-0.23055	-0.00014256	0.21561	0.00013332	618.342548468596	74.405	1.3032	74.405	74.066	75.369	0					121	45	5	0	0	0	0.002913	4	19061	19011;19061;19110;19156		103.82	55.441	1	6243000			17478	4275	9801	9802	22306;22307;22308;22309	22307					0.06305962948499655
IYVPDIRNVF	10	Unmodified	_IYVPDIRNVF_					0	0	0		ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.3428344726562	2	618.342781	1234.67101	0.091618	5.6651E-05	-0.023749	-1.4685E-05	0.067869	4.1966E-05	618.3426506155358	74.35	1.1548	74.403	74.09	75.244	0.052361					107	40	4	0	0	0	0.00068414	4	19030	18981;19030;19073;19121		125.04	63.68	1	6524200			17479	4275	9801	9802	22310;22311;22312;22313	22311					0.06305962948499655
IYVPDIRNVF	10	Unmodified	_IYVPDIRNVF_					0	0	0		ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.3428955078125	2	618.342781	1234.67101	0.33502	0.00020715	-0.14467	-8.9456E-05	0.19035	0.0001177	618.3425827359397	74.426	1.1833	74.395	74.135	75.318	-0.030655					118	42	4	0	0	0	0.0014947	3	19068	19068;19114;19159		114.19	61.918	1	7631800			17480	4275	9801	9802	22314;22315;22316	22314					0.06305962948499655
IYVPIKQFF	9	Unmodified	_IYVPIKQFF_					0	0	0		nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-3|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.7796020507812	2	577.83406	1153.65357	0.34836	0.00020129	0.16428	9.4927E-05	0.51264	0.00029622	577.8339254745158	72.911	0.62878	72.911	72.534	73.163	0					36	22	2	0	0	0	0.18943	1	18653	18653		30.225	15.643	1	172120			17481	5150	9802	9803	22317	22317					0.08288667413512485
IYVPIKQFF	9	Unmodified	_IYVPIKQFF_					0	0	0		nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-3|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.7798461914062	2	577.83406	1153.65357	0.35412	0.00020462	0.10559	6.1011E-05	0.45971	0.00026564	577.833972460714	72.878	0.68973	72.932	72.51	73.2	0.053833					42	24	2	0	0	0	0.19839	1	18579	18579		28.487	15.955	1	226830			17482	5150	9802	9803	22318	22318					0.08288667413512485
IYVPIKQFF	9	Unmodified	_IYVPIKQFF_					0	0	0		nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-3|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.7799072265625	2	577.83406	1153.65357	0.40241	0.00023253	0.077371	4.4708E-05	0.47978	0.00027723	577.8339881512126	72.905	0.82292	72.875	72.627	73.449	-0.029305					42	29	2	0	0	0	0.21905	1	18607	18607		23.148	5.0134	1	246310			17483	5150	9802	9803	22319	22319					0.08288667413512485
IYVPSSYHL	9	Unmodified	_IYVPSSYHL_					0	0	0		ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2	ENSG00000119906|ENST00000238961|SLF2	ENSG00000119906|ENST00000238961|SLF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7821655273438	2	539.782025	1077.5495	0.73394	0.00039617	0.80753	0.00043589	1.5415	0.00083206	539.7825124190986	54.304	0.6288	54.304	53.834	54.462	0					49	21	3	0	0	0	0.017871	2	12874	12874;12929		67.344	27.387	1	1344200			17484	2913	9803	9804	22320;22321	22320					0.013823405859966442
IYVPSSYHL	9	Unmodified	_IYVPSSYHL_					0	0	0		ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2	ENSG00000119906|ENST00000238961|SLF2	ENSG00000119906|ENST00000238961|SLF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7817993164062	2	539.782025	1077.5495	0.74308	0.0004011	0.25212	0.00013609	0.99519	0.00053719	539.7821437903871	54.439	0.56822	54.424	54.113	54.681	-0.015923					47	19	3	0	0	0	0.055495	2	12927	12918;12927		50.855	16.753	1	1431800			17485	2913	9803	9804	22322;22323	22323					0.013823405859966442
IYVPVASCAF	10	Unmodified	_IYVPVASCAF_					0	0	0			REV__ENST00000494119.1_1_X:103042747-103043520:+|nuORF	REV__ENST00000494119.1_1_X:103042747-103043520:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.2825927734375	2	535.272978	1068.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.412	1	78.471	77.971	78.971	0.058151								0	0	0	0.34495	1	20276	20276		16.942	3.0362	1		+		17486	15195	9804	9805	22324	22324					-0.00012117660367039207
IYVQEMAKL	9	Oxidation (M)	_IYVQEM(Oxidation (M))AKL_		IYVQEM(1)AKL		IYVQEM(130)AKL	0	0	1		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENSG00000099284|ENST00000373255|MACROH2A2;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7966918945312	2	555.796817	1109.57908	0.42809	0.00023793	-0.41195	-0.00022896	0.016145	8.9732E-06	555.7965909522408	40.268	1.0143	40.268	39.996	41.01	0					93	36	4	0	0	0	0.00078897	1	8597	8597		125.04	56.957	1	3203800			17487	2520;11396	9805	9806	22325	22325		311			0.028675365398157737
IYVQEMAKL	9	Oxidation (M)	_IYVQEM(Oxidation (M))AKL_		IYVQEM(1)AKL		IYVQEM(130)AKL	0	0	1		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENSG00000099284|ENST00000373255|MACROH2A2;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7967529296875	2	555.796817	1109.57908	0.55676	0.00030944	-0.48975	-0.0002722	0.067007	3.7242E-05	555.7965476344721	40.115	0.99152	40.208	39.887	40.879	0.09267					85	35	4	0	0	0	0.00078897	1	8538	8538		125.04	56.957	1	3481100			17488	2520;11396	9805	9806	22326	22326		311			0.028675365398157737
IYVQEMAKL	9	Oxidation (M)	_IYVQEM(Oxidation (M))AKL_		IYVQEM(1)AKL		IYVQEM(110)AKL	0	0	1		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENSG00000099284|ENST00000373255|MACROH2A2;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7968139648438	2	555.796817	1109.57908	0.35125	0.00019523	-0.26884	-0.00014942	0.082414	4.5805E-05	555.7966809935639	40.025	0.91145	40.124	39.868	40.78	0.099407					82	32	4	0	0	0	0.00078897	1	8520	8520		114.19	46.106	1	3252100			17489	2520;11396	9805	9806	22327	22327		311			0.028675365398157737
IYVRLDFSI	9	Unmodified	_IYVRLDFSI_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7821655273438	2	563.318774	1124.623	0.34177	0.00019252	-1.2725	-0.00071683	-0.93075	-0.00052431	563.317879852825	66.02	0.43711	66.006	65.89	66.327	-0.013588					25	15	2	0	0	0	0.22596	1	16535	16535		21.747	0	1	152510			17490	5753	9806	9807	22328	22328					0.06566889028476908
IYVSLFSTT	9	Unmodified	_IYVSLFSTT_					0	0	0			REV__ENST00000557159.5_1_14:20924026-20925664:+|nuORF	REV__ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7757568359375	2	515.776408	1029.53826	0.5639	0.00029085	-1.8829	-0.00097113	-1.319	-0.00068029	515.7755364802537	64.047	0.54361	64.047	63.826	64.37	0					34	19	3	0	0	0	0.10075	1	15911	15911		38.151	0	1	442120	+		17491	22268	9807	9808	22329	22329					0.024675184918578452
IYVSLFSTT	9	Unmodified	_IYVSLFSTT_					0	0	0			REV__ENST00000557159.5_1_14:20924026-20925664:+|nuORF	REV__ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	515.776408	1029.53826	0.44269	0.00022833	-1.6204	-0.00083575	-1.1777	-0.00060742	515.7755192874063	64.06	0.48773	64.05	63.851	64.339	-0.0095291	0.0017606	0.0001807	NaN	38.151	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403270	+		17492	22268	9807	9808							0.024675184918578452
IYVSQICQI	9	Unmodified	_IYVSQICQI_					0	0	0			REV__ENST00000518193.1_1_8:63769406-63769502:-|nuORF	REV__ENST00000518193.1_1_8:63769406-63769502:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.8062133789062	2	533.78371	1065.55287	0.43452	0.00023194	-2.2749	-0.0012143	-1.8404	-0.00098239	533.7832727535232	59.123	0.24324	59.123	59.024	59.267	0					10	8	2	0	0	0	0.22674	1	14413	14413		22.736	4.6013	1	71852	+		17493	18650	9808	9809	22330	22330					0.022712673683372486
IYVSRVSPF	9	Unmodified	_IYVSRVSPF_					0	0	0		nc|ENSG00000162714|Q96IT1-2|ZNF496	nc|ENSG00000162714|Q96IT1-2|ZNF496	nc|ENSG00000162714|Q96IT1-2|ZNF496	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.3104858398438	2	534.297842	1066.58113	0.53268	0.00028461	1.4798	0.00079065	2.0125	0.0010753	534.2987077730921	68.443	0.42125	68.424	68.345	68.766	-0.019157					19	14	2	0	0	0	0.20344	1	17257	17257		23.148	3.7865	1	225430			17494	12793	9809	9810	22331	22331					0.050503333399547046
IYVTSNSWN	9	Unmodified	_IYVTSNSWN_					0	0	0		LRIG2|p.H216Kfs*30|1|0.05|ENSG00000198799|chr1:113094467-113094468|-/AAAAATCTATG|frameshift_variant	LRIG2|p.H216Kfs*30|1|0.05|ENSG00000198799|chr1:113094467-113094468|-/AAAAATCTATG|frameshift_variant	LRIG2|p.H216Kfs*30|1|0.05|ENSG00000198799|chr1:113094467-113094468|-/AAAAATCTATG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2774658203125	2	542.258914	1082.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.625	1	84.612	84.112	85.112	-0.01284								0	0	0	0.24522	1	22181	22181		7.9102	0.62092	1				17495	12503	9810	9811	22332	22332					-0.03467724316078602
IYVVKQTRLL	10	Unmodified	_IYVVKQTRLL_					0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	617.3457641601562	2	616.889898	1231.76524	0.18422	0.00011364	-0.53557	-0.00033039	-0.35135	-0.00021674	616.8899238390816	57.946	0.44331	58.032	57.865	58.308	0.085617					24	15	2	0	0	0	0.31847	1	14093	14093		6.7232	0.51738	1	331430	+		17496	15937	9811	9812	22333	22333					0.15863101770673893
IYVVKVMR	8	Unmodified	_IYVVKVMR_					0	0	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.8058166503906	2	504.307155	1006.59976	0.19171	9.6682E-05	-0.083759	-4.224E-05	0.10795	5.4442E-05	504.30747043031397	26.288	0.88665	26.288	25.955	26.841	0					89	30	4	0	0	0	0.3366	1	4369	4369		18.135	4.6271	1	586550			17497	3689	9812	9813	22334	22334					0.09672171710167277
IYVYRILF	8	Unmodified	_IYVYRILF_					0	0	0			REV__nc|ENSG00000054392|Q5VTY9-6|HHAT	REV__nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7593994140625	2	543.820953	1085.62735	1.0745	0.00058435	-1.7997	-0.00097872	-0.72518	-0.00039437	543.8197707205222	56.191	1.0124	56.269	56.028	57.04	0.078674					68	37	2	0	0	0	0.32778	1	13656	13656		20.871	1.4322	1	4526100	+		17498	13585	9813	9814	22335	22335					0.08796398242020587
IYVYRILF	8	Unmodified	_IYVYRILF_					0	0	0			REV__nc|ENSG00000054392|Q5VTY9-6|HHAT	REV__nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	543.820953	1085.62735	0.91407	0.00049709	-1.591	-0.00086522	-0.67693	-0.00036813	543.8198202094459	56.3	1.0453	56.3	55.992	57.038	0	-0.011898	4.7403E-05	NaN	20.871	70	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4424300	+		17499	13585	9813	9814							0.08796398242020587
IYVYRILF	8	Unmodified	_IYVYRILF_					0	0	0			REV__nc|ENSG00000054392|Q5VTY9-6|HHAT	REV__nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.820953	1085.62735	1.2382	0.00067337	-1.5268	-0.00083029	-0.28855	-0.00015692	543.8198730834108	56.386	1.1195	56.367	56.048	57.168	-0.019081	0.054889	0.00011726	NaN	20.871	68	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5618300	+		17500	13585	9813	9814							0.08796398242020587
IYWARWIA	8	Unmodified	_IYWARWIA_					0	0	0			REV__nc|ENSG00000009950|Q9NP71-5|MLXIPL	REV__nc|ENSG00000009950|Q9NP71-5|MLXIPL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2579345703125	2	539.795269	1077.57599	0.7415	0.00040026	3.3303	0.0017977	4.0718	0.002198	540.2981594197136	48.633	0.38047	48.678	48.416	48.796	0.044891					20	13	2	0	0	0	0.34218	1	11154	11154		9.3474	0	1	289340	+		17501	13410	9814	9815	22336	22336					0.040300742679846735
IYWIDYII	8	Unmodified	_IYWIDYII_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.31298828125	2	549.797143	1097.57973	0.18008	9.9005E-05	-2.3223	-0.0012768	-2.1423	-0.0011778	549.7964806057481	76.045	0.73798	76.045	75.821	76.559	0					41	26	3	0	0	0	0.33995	1	19706	19706		15.768	0	1	155480			17502	6806	9815	9816	22337	22337					0.034846992511802455
IYWIDYII	8	Unmodified	_IYWIDYII_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7623291015625	2	549.797143	1097.57973	0.44409	0.00024416	-2.4672	-0.0013564	-2.0231	-0.0011123	549.7954725514217	80.699	0.55458	80.672	80.233	80.788	-0.026825					24	19	2	0	0	0	0.34185	1	20945	20945		10.183	0	1	85368			17503	6806	9815	9816	22338	22338					0.034846992511802455
IYWNRKQL	8	Unmodified	_IYWNRKQL_					0	0	0		ENSG00000151665|ENST00000281382|PIGF	ENSG00000151665|ENST00000281382|PIGF	ENSG00000151665|ENST00000281382|PIGF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.277587890625	2	560.816733	1119.61891	0.01277	7.1617E-06	4.193	0.0023515	4.2057	0.0023587	560.8175199516888	59.82	0.14127	59.82	59.728	59.87	0					6	4	2	0	0	0	0.34092	1	14592	14592		13.508	0.97634	1	100070			17504	4973	9816	9817	22339	22339					0.06388844325419996
IYWSYMDRGS	10	Unmodified	_IYWSYMDRGS_					0	0	0		ENST00000550060.5_1_12:62636327-62652582:-|nuORF	ENST00000550060.5_1_12:62636327-62652582:-|nuORF	ENST00000550060.5_1_12:62636327-62652582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.52490234375	3	426.525496	1276.55466	-0.29089	-0.00012407	-1.0293	-0.00043904	-1.3202	-0.00056312	426.52515829312705	22.794	0.60453	22.794	22.505	23.11	0					49	20	3	0	0	0	0.41085	1	3246	3246		0.62683	0	1	175620			17505	11792	9817	9818	22340	22340					-0.07255723613707232
IYWTKYYDF	9	Unmodified	_IYWTKYYDF_					0	0	0		nc|ENSG00000089127|P00973-3|OAS1;OAS1|p.P281Lfs*19|1|0.27|ENSG00000089127|chr12:112916626-112916627|-/TCTTGGAATTAGTCATAAACTACCAGCAACTCTGCATCTACTGGACAAAGTATTATGACTTTAAAAA|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;OAS1|p.K364Ifs*8|1|0.21|ENSG00000089127|chr12:112919440-112919441|AA/-|frameshift_variant;ENSG00000089127|ENST00000202917|OAS1	nc|ENSG00000089127|P00973-3|OAS1	nc|ENSG00000089127|P00973-3|OAS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.77642822265625	3	433.541252	1297.60193	-0.11178	-4.8461E-05	-2.279	-0.00098803	-2.3907	-0.0010365	433.87417835179536	43.26	0.61536	43.26	42.93	43.545	0					42	22	3	0	0	0	0.25049	1	9573	9573		13.615	2.7159	1	223850			17506	12603	9818	9819	22341	22341					-0.034971210710637024
IYWTKYYTL	9	Unmodified	_IYWTKYYTL_					0	0	0		ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.28204345703125	3	417.55338	1249.63831	0.032793	1.3693E-05	1.8609	0.00077701	1.8937	0.0007907	417.5542151622495	24.39	1.208	24.351	23.993	25.201	-0.038927					69	41	3	0	0	0	0.25622	1	3693	3693		4.5289	0	1	140560			17507	3845	9819	9820	22342	22342					0.023477558256672637
IYYDGLMSF	9	Oxidation (M)	_IYYDGLM(Oxidation (M))SF_		IYYDGLM(1)SF		IYYDGLM(160)SF	0	0	1		ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.7521362304688	2	562.752075	1123.4896	0.1815	0.00010214	0.42666	0.0002401	0.60816	0.00034224	562.7522050595693	69.892	1.3995	69.892	69.369	70.768	0					152	50	5	0	0	0	5.2996E-06	3	17635	17635;17686;17733		156.16	127.98	1	2030700			17508	1845	9820	9821	22343;22344;22345	22343		224			-0.06720718139536075
IYYDGLMSF	9	Oxidation (M)	_IYYDGLM(Oxidation (M))SF_		IYYDGLM(1)SF		IYYDGLM(160)SF	0	0	1		ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.7521362304688	2	562.752075	1123.4896	0.25441	0.00014317	0.32189	0.00018115	0.5763	0.00032431	562.7521583060952	69.856	1.207	69.922	69.428	70.635	0.06604					153	42	5	0	0	0	5.2996E-06	4	17606	17606;17659;17707;17761		156.16	124.04	1	2015000			17509	1845	9820	9821	22346;22347;22348;22349	22346		224			-0.06720718139536075
IYYDGLMSF	9	Oxidation (M)	_IYYDGLM(Oxidation (M))SF_		IYYDGLM(1)SF		IYYDGLM(180)SF	0	0	1		ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.752197265625	2	562.752075	1123.4896	0.21495	0.00012096	0.51492	0.00028977	0.72987	0.00041073	562.7521853728978	69.913	1.1773	69.891	69.404	70.581	-0.022087					126	42	4	0	0	0	3.327E-09	3	17637	17637;17686;17736		180.01	135.6	1	2086600			17510	1845	9820	9821	22350;22351;22352	22350		224			-0.06720718139536075
IYYFKANVF	9	Unmodified	_IYYFKANVF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.8084716796875	2	582.808042	1163.60153	0.5176	0.00030166	-0.14965	-8.7219E-05	0.36794	0.00021444	582.8078623110866	63.998	1.2187	63.998	63.665	64.884	0					126	44	4	0	0	0	0.00077644	2	15850	15850;15898		125.62	74.77	1	2328800			17511	2353	9821	9822	22353;22354	22353					0.02627503999747205
IYYFKANVF	9	Unmodified	_IYYFKANVF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.80810546875	2	582.808042	1163.60153	0.42282	0.00024642	-0.076288	-4.4461E-05	0.34653	0.00020196	582.8079373419622	63.879	1.4427	63.972	63.647	65.09	0.09288					136	52	5	0	0	0	0.00010798	2	15851	15802;15851		139.54	85.968	1	2694600			17512	2353	9821	9822	22355;22356	22356					0.02627503999747205
IYYFKANVF	9	Unmodified	_IYYFKANVF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.8081665039062	2	582.808042	1163.60153	0.53752	0.00031327	-0.32404	-0.00018885	0.21348	0.00012442	582.8078540148834	64.005	1.3161	63.995	63.658	64.974	-0.0095329					127	47	4	0	0	0	0.00014409	2	15842	15842;15884		133.7	89.295	1	3015000			17513	2353	9821	9822	22357;22358	22357					0.02627503999747205
IYYHLPHLL	9	Unmodified	_IYYHLPHLL_					0	0	0		ENSG00000071073|ENST00000393487|MGAT4A	ENSG00000071073|ENST00000393487|MGAT4A	ENSG00000071073|ENST00000393487|MGAT4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3299560546875	2	584.829309	1167.64407	0.50673	0.00029635	2.044	0.0011954	2.5507	0.0014917	584.830359430333	55.706	0.55686	55.777	55.297	55.854	0.070885					25	20	2	0	0	0	0.25291	1	13248	13248		9.3474	0.75416	1	280340			17514	950	9822	9823	22359	22359					0.06694899127978715
IYYIDMQKF	9	Oxidation (M)	_IYYIDM(Oxidation (M))QKF_		IYYIDM(1)QKF		IYYIDM(160)QKF	0	0	1		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.303466796875	2	618.8021	1235.58965	0.34414	0.00021296	-0.43483	-0.00026907	-0.090685	-5.6116E-05	618.8019308416185	53.202	0.89823	53.202	52.96	53.858	0					80	33	4	0	0	0	4.3828E-07	2	12570	12570;12621		163.04	106.86	1	2057600			17515	3987	9823	9824	22360;22361	22360		501			-0.018724808057640985
IYYIDMQKF	9	Oxidation (M)	_IYYIDM(Oxidation (M))QKF_		IYYIDM(1)QKF		IYYIDM(140)QKF	0	0	1		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.802001953125	2	618.8021	1235.58965	0.30265	0.00018728	-0.58285	-0.00036067	-0.2802	-0.00017339	618.8018031110889	53.194	0.98689	53.25	52.966	53.953	0.056259					80	36	4	0	0	0	9.2305E-05	2	12523	12523;12574		142.08	94.331	1	2230500			17516	3987	9823	9824	22362;22363	22362		501			-0.018724808057640985
IYYIDMQKF	9	Oxidation (M)	_IYYIDM(Oxidation (M))QKF_		IYYIDM(1)QKF		IYYIDM(140)QKF	0	0	1		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.802001953125	2	618.8021	1235.58965	0.29206	0.00018073	-0.43616	-0.0002699	-0.1441	-8.9168E-05	618.8020201079725	53.41	0.67318	53.4	53.142	53.815	-0.0096092					73	25	4	0	0	0	0.00012108	3	12638	12587;12638;12686		137.42	99.45	1	2040800			17517	3987	9823	9824	22364;22365;22366	22365		501			-0.018724808057640985
IYYKNISGF	9	Unmodified	_IYYKNISGF_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.749267578125	2	552.78985	1103.56515	0.29339	0.00016218	3.1546	0.0017438	3.448	0.001906	552.7918436462027	73.283	0.5573	73.283	73.02	73.578	0					22	19	2	0	0	0	0.21905	1	18672	18672		23.148	3.7094	1	91082			17518	4227	9824	9825	22367	22367					0.01750627103047009
IYYPHFSEW	9	Unmodified	_IYYPHFSEW_					0	0	0			REV__ENST00000523638.5_1_19:37006157-37006211:-|nuORF	REV__ENST00000523638.5_1_19:37006157-37006211:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.286865234375	2	621.284931	1240.55531	0.31386	0.000195	1.2974	0.00080605	1.6112	0.001001	621.2859880841543	78.718	0.62476	78.776	78.39	79.015	0.058151					51	24	3	0	0	0	0.27532	1	20433	20433		12.532	1.732	1	252260	+		17519	21934	9825	9826	22368	22368					-0.05534560902356134
IYYRFLTL	8	Unmodified	_IYYRFLTL_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7921752929688	2	544.810585	1087.60662	0.58403	0.00031818	0.038359	2.0898E-05	0.62239	0.00033908	544.8105449348249	72.901	1.1792	72.955	72.484	73.663	0.053833					109	42	4	0	0	0	0.41097	1	18705	18705		18.135	4.6271	1	829700			17520	2239	9826	9827	22369	22369					0.06631807862368078
IYYSQEKYF	9	Unmodified	_IYYSQEKYF_					0	0	0		nc|ENSG00000168026|Q8NDW8-6|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENST00000490036.5_1_3:39149250-39151755:+|nuORF;ENST00000459702.1_1_3:39149250-39159704:+|nuORF;ENST00000479954.5_1_3:39149250-39159704:+|nuORF	nc|ENSG00000168026|Q8NDW8-6|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.58770751953125	3	414.201007	1239.58119	0.35438	0.00014678	1.0367	0.00042939	1.391	0.00057617	414.5360055419853	35.835	0.1405	35.921	35.818	35.958	0.08625					6	4	2	0	0	0	0.25417	1	7186	7186		2.7352	0.64919	1	30550			17521	6237	9827	9828	22370	22370					-0.02901711450726907
IYYTGKYQSL	10	Unmodified	_IYYTGKYQSL_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.K2432Nfs*23|1|0.23|ENSG00000005810|chr13:77140155-77140155|T/-|frameshift_variant;MYCBP2|p.E3042Vfs*11|1|0.09|ENSG00000005810|chr13:77097915-77097916|-/GGGAAGA|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.3193969726562	2	618.318971	1234.62339	0.53191	0.00032889	0.41585	0.00025713	0.94776	0.00058602	618.3192092987653	45.565	0.46632	45.565	45.366	45.832	0					39	16	3	0	0	0	0.016475	1	10236	10236		75.571	35.613	1	532340			17522	342	9828	9829	22371	22371					0.015462639576753645
IYYTGKYQSL	10	Unmodified	_IYYTGKYQSL_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.K2432Nfs*23|1|0.23|ENSG00000005810|chr13:77140155-77140155|T/-|frameshift_variant;MYCBP2|p.E3042Vfs*11|1|0.09|ENSG00000005810|chr13:77097915-77097916|-/GGGAAGA|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.3189697265625	2	618.318971	1234.62339	0.34486	0.00021323	0.24357	0.0001506	0.58843	0.00036383	618.3192690878923	45.238	0.45153	45.306	45.062	45.514	0.068569					39	15	3	0	0	0	0.0049066	1	10077	10077		92.201	43.855	1	637130			17523	342	9828	9829	22372	22372					0.015462639576753645
IYYTGKYQSL	10	Unmodified	_IYYTGKYQSL_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.K2432Nfs*23|1|0.23|ENSG00000005810|chr13:77140155-77140155|T/-|frameshift_variant;MYCBP2|p.E3042Vfs*11|1|0.09|ENSG00000005810|chr13:77097915-77097916|-/GGGAAGA|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.3189697265625	2	618.318971	1234.62339	0.30948	0.00019136	0.43793	0.00027078	0.74741	0.00046214	618.3193030690683	45.196	0.47903	45.271	45.101	45.58	0.075047					42	17	3	0	0	0	0.0017096	2	10068	10068;10119		111.31	62.963	1	705090			17524	342	9828	9829	22373;22374	22373					0.015462639576753645
IYYTYTVF	8	Unmodified	_IYYTYTVF_					0	0	0			REV__ENST00000405709.6_1_7:110303289-110303394:-|nuORF	REV__ENST00000405709.6_1_7:110303289-110303394:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.2664794921875	2	535.265676	1068.5168	0.54486	0.00029165	0.66776	0.00035743	1.2126	0.00064907	535.2660866605108	63.361	0.54797	63.361	63.117	63.665	0					32	19	2	0	0	0	0.43455	1	15713	15713		11.114	2.5212	1	378510	+		17525	20733	9829	9830	22375	22375					-0.014718665368491202
IYYVDVQKF	9	Unmodified	_IYYVDVQKF_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8109741210938	2	587.810782	1173.60701	0.46435	0.00027295	0.24989	0.00014689	0.71424	0.00041984	587.8108447837884	58.352	1.006	58.352	58.075	59.081	0					76	34	4	0	0	0	4.3881E-05	2	14173	14130;14173		149.91	60.96	1	2193700			17526	5464	9830	9831	22376;22377	22377					0.027151827915531612
IYYVDVQKF	9	Unmodified	_IYYVDVQKF_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.8109741210938	2	587.810782	1173.60701	0.34509	0.00020285	0.30164	0.00017731	0.64673	0.00038016	587.8108370511993	58.165	1.0443	58.25	57.997	59.041	0.085617					73	36	3	0	0	0	0.00078391	2	14096	14096;14148		125.53	56.424	1	2549100			17527	5464	9830	9831	22378;22379	22378					0.027151827915531612
IYYVDVQKF	9	Unmodified	_IYYVDVQKF_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.81103515625	2	587.810782	1173.60701	0.74963	0.00044064	-0.21158	-0.00012437	0.53805	0.00031627	587.8105748989295	58.433	0.86368	58.419	58.141	59.005	-0.014267					69	30	4	0	0	0	4.3881E-05	2	14183	14138;14183		149.91	62.956	1	2517400			17528	5464	9830	9831	22380;22381	22381					0.027151827915531612
IYYYYRLI	8	Unmodified	_IYYYYRLI_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7;REV__nc|ENSG00000118997|Q8WXX0-4|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2898559570312	2	583.815867	1165.61718	0.24822	0.00014491	-0.050031	-2.9209E-05	0.19818	0.0001157	583.8160742297283	66.841	0.61924	66.924	66.6	67.219	0.083832					39	21	3	0	0	0	0.34092	1	16684	16684		13.508	0.46542	1	294910	+		17529	15026;22968	9831	9832	22382	22382					0.04099790516806934
IYYYYTLSAC	10	Unmodified	_IYYYYTLSAC_					0	0	0		ENST00000461662.1_1_1:186386602-186388205:+|nuORF	ENST00000461662.1_1_1:186386602-186388205:+|nuORF	ENST00000461662.1_1_1:186386602-186388205:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.2899169921875	2	630.286282	1258.55801	0.26193	0.00016509	3.4924	0.0022012	3.7543	0.0023663	630.2906480798947	68.022	0.74629	68.1	67.77	68.517	0.078041					61	26	4	0	0	0	0.24715	1	17176	17176		26.884	5.137	1	318600			17530	10747	9832	9833	22383	22383					-0.060924735596699975
KAAAKRQVL	9	Unmodified	_KAAAKRQVL_					0	0	0		ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.7717590332031	2	492.819276	983.623999	0.036348	1.7913E-05	-0.30685	-0.00015122	-0.2705	-0.00013331	492.81905378132956	13.269	0.36214	13.269	13.147	13.509	0					26	12	3	0	0	0	0.17242	1	383	383		36.127	15.673	1	287350			17531	6585	9833	9834	22384	22384					0.13153148188030173
KAAAKRQVL	9	Unmodified	_KAAAKRQVL_					0	0	0		ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.771728515625	2	492.819276	983.623999	0.026958	1.3286E-05	-0.82152	-0.00040486	-0.79456	-0.00039157	492.81877981208015	13.302	0.39693	13.203	13.069	13.466	-0.099291					29	13	3	0	0	0	0.1939	1	405	405		30.637	12.502	1	257870			17532	6585	9833	9834	22385	22385					0.13153148188030173
KAAAKRQVL	9	Unmodified	_KAAAKRQVL_					0	0	0		ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.771728515625	2	492.819276	983.623999	-0.04896	-2.4129E-05	-0.36922	-0.00018196	-0.41818	-0.00020609	492.81893447071377	13.318	0.30902	13.25	13.134	13.443	-0.067496					27	10	4	0	0	0	0.20167	1	393	393		29.082	13.234	1	233830			17533	6585	9833	9834	22386	22386					0.13153148188030173
KAAGHLRN	8	Unmodified	_KAAGHLRN_					0	0	0			REV__ENST00000480102.1_1_2:86348636-86354336:+|nuORF	REV__ENST00000480102.1_1_2:86348636-86354336:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.88507080078125	2	433.751393	865.488233	-0.39218	-0.00017011	-0.12765	-5.5368E-05	-0.51983	-0.00022548	433.7512469963077	13.938	0.80202	13.834	13.357	14.159	-0.10466					45	28	3	0	0	0	0.34408	1	665	665		2.3027	0	1	79439	+		17534	21472	9834	9835	22387	22387					0.050108733972138
KAAQKAKPV	9	Unmodified	_KAAQKAKPV_					0	0	0		nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1;ENST00000507175.5_1_5:145826912-145859658:+|nuORF	nc|ENSG00000113649|O14776-2|TCERG1	nc|ENSG00000113649|O14776-2|TCERG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.8006896972656	2	470.800552	939.58655	0.11402	5.3679E-05	0.49153	0.00023141	0.60555	0.00028509	470.80063109512497	24.381	0.45653	24.343	24.135	24.591	-0.038927					35	15	3	0	0	0	0.31038	1	3765	3765		7.2892	2.3922	1	201230			17535	2521	9835	9836	22388	22388					0.11434056922405489
KAARYSPLKF	10	Unmodified	_KAARYSPLKF_					0	0	0			REV__nc|ENSG00000159023|P11171-6|EPB41	REV__nc|ENSG00000159023|P11171-6|EPB41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.8456420898438	2	590.84549	1179.67643	0.17225	0.00010177	0.23856	0.00014095	0.41081	0.00024273	590.845607442612	23.023	0.88674	22.936	22.628	23.515	-0.087608					91	31	4	0	0	0	0.34053	1	3439	3439		14.405	2.1647	1	1093000	+		17536	16830	9836	9837	22389	22389					0.09377686530956453
KAARYSPLKF	10	Unmodified	_KAARYSPLKF_					0	0	0			REV__nc|ENSG00000159023|P11171-6|EPB41	REV__nc|ENSG00000159023|P11171-6|EPB41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.8461303710938	2	590.84549	1179.67643	0.30457	0.00017995	0.16322	9.6438E-05	0.46779	0.00027639	590.8455228885639	23.04	0.84739	22.995	22.709	23.556	-0.044867					91	30	4	0	0	0	0.30872	1	3437	3437		19.362	2.249	1	1098600	+		17537	16830	9836	9837	22390	22390					0.09377686530956453
KAASLSERL	9	Unmodified	_KAASLSERL_					0	0	0		ENSG00000180543|ENST00000322128|TSPYL5	ENSG00000180543|ENST00000322128|TSPYL5	ENSG00000180543|ENST00000322128|TSPYL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.27496337890625	2	487.785099	973.555644	-0.049231	-2.4014E-05	-0.12021	-5.8637E-05	-0.16944	-8.2651E-05	487.78509773375146	13.655	0.30984	13.655	13.484	13.794	0					16	10	2	0	0	0	0.25431	1	443	443		9.3831	0	1	88647			17538	7193	9837	9838	22391	22391					0.06780858817501212
KAASLSERL	9	Unmodified	_KAASLSERL_					0	0	0		ENSG00000180543|ENST00000322128|TSPYL5	ENSG00000180543|ENST00000322128|TSPYL5	ENSG00000180543|ENST00000322128|TSPYL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.2748718261719	2	487.785099	973.555644	-0.057761	-2.8175E-05	-0.40098	-0.00019559	-0.45874	-0.00022377	487.7852634170177	13.772	0.60064	13.706	13.469	14.07	-0.066067					45	20	4	0	0	0	0.25431	1	466	466		9.3831	0	1	110420			17539	7193	9837	9838	22392	22392					0.06780858817501212
KAASVRPVL	9	Unmodified	_KAASVRPVL_					0	0	0		ENSG00000215305|ENST00000380445|VPS16;nc|ENSG00000215305|Q9H269-2|VPS16	ENSG00000215305|ENST00000380445|VPS16	ENSG00000215305|ENST00000380445|VPS16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.8006591796875	2	470.800552	939.58655	-0.008169	-3.846E-06	0.53757	0.00025309	0.5294	0.00024924	470.8006611188649	24.28	0.45859	24.28	24.058	24.517	0					36	15	3	0	0	0	0.16685	2	3685	3685;3740		28.495	12.647	1	179250			17540	8406	9838	9839	22393;22394	22393					0.11434056922405489
KAASVRPVL	9	Unmodified	_KAASVRPVL_					0	0	0		ENSG00000215305|ENST00000380445|VPS16;nc|ENSG00000215305|Q9H269-2|VPS16	ENSG00000215305|ENST00000380445|VPS16	ENSG00000215305|ENST00000380445|VPS16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.80072021484375	2	470.800552	939.58655	0.16338	7.6918E-05	0.49025	0.00023081	0.65362	0.00030773	470.8006505079255	24.379	0.47036	24.307	24.085	24.555	-0.072559					34	15	3	0	0	0	0.22935	1	3745	3745		19.362	8.538	1	174310			17541	8406	9838	9839	22395	22395					0.11434056922405489
KAASVRPVL	9	Unmodified	_KAASVRPVL_					0	0	0		ENSG00000215305|ENST00000380445|VPS16;nc|ENSG00000215305|Q9H269-2|VPS16	ENSG00000215305|ENST00000380445|VPS16	ENSG00000215305|ENST00000380445|VPS16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.8006286621094	2	470.800552	939.58655	0.11402	5.3679E-05	0.49153	0.00023141	0.60555	0.00028509	470.80063109512497	24.381	0.45653	24.343	24.135	24.591	-0.038927					35	15	3	0	0	0	0.12279	1	3713	3713		34.932	21.026	1	201230			17542	8406	9838	9839	22396	22396					0.11434056922405489
KAAVSKHE	8	Unmodified	_KAAVSKHE_					0	0	0		nc|ENSG00000186439|Q13061-2|TRDN;ENSG00000186439|ENST00000334268|TRDN	nc|ENSG00000186439|Q13061-2|TRDN	nc|ENSG00000186439|Q13061-2|TRDN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.78009033203125	2	435.245609	868.476666	-0.18455	-8.0325E-05	1.132	0.00049269	0.94743	0.00041237	435.2465597434657	29.069	0.42106	29.082	28.879	29.3	0.013475					23	15	2	0	0	0	0.34313	1	5205	5205		3.5965	0	1	165940			17543	7614	9839	9840	22397	22397					0.037166315832337204
KACGLLGR	8	Unmodified	_KACGLLGR_					0	0	0			REV__ENST00000546580.1_1_12:58329804-58329888:-|nuORF	REV__ENST00000546580.1_1_12:58329804-58329888:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.90081787109375	2	409.239273	816.463992	0.18035	7.3807E-05	-2.5788	-0.0010553	-2.3984	-0.00098154	409.2381216562199	42.145	0.20383	42.236	42.151	42.354	0.091362					8	6	2	0	0	0	0.34337	1	9175	9175		2.3027	0	1	65000	+		17544	22169	9840	9841	22398	22398					0.0484189691934489
KAEEFRNLF	9	Unmodified	_KAEEFRNLF_					0	0	0			REV__nc|ENSG00000168439|P31948-2|STIP1	REV__nc|ENSG00000168439|P31948-2|STIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.7908935546875	2	577.303655	1152.59276	0.39597	0.00022859	0.52557	0.00030341	0.92154	0.00053201	577.3040201715582	58.739	0.30791	58.831	58.645	58.953	0.091301					13	10	2	0	0	0	0.21538	1	14285	14285		26.268	8.1218	1	165050	+		17545	17460	9841	9842	22399	22399					0.02256530363274578
KAFEKNIFNK	10	Unmodified	_KAFEKNIFNK_					0	0	0		ENST00000553009.5_1_12:54718935-54736154:+|nuORF;ENST00000548281.5_1_12:54718997-54741610:+|nuORF;ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1	ENST00000553009.5_1_12:54718935-54736154:+|nuORF	ENST00000553009.5_1_12:54718935-54736154:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.2101745605469	3	413.567912	1237.68191	0.2195	9.0779E-05	0.99034	0.00040957	1.2098	0.00050035	413.56824323779165	26.189	0.60664	26.167	25.923	26.53	-0.022236					39	21	2	0	0	0	0.31929	1	4279	4279		4.4062	2.3222	1	227860			17546	2366	9842	9843	22400	22400					0.07257365322789155
KAFGEEPPPG	10	Unmodified	_KAFGEEPPPG_					0	0	0		ENST00000585606.5_1_19:14590895-14591279:-|nuORF	ENST00000585606.5_1_19:14590895-14591279:-|nuORF	ENST00000585606.5_1_19:14590895-14591279:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7979125976562	2	514.756007	1027.49746	0.044508	2.2911E-05	-0.30478	-0.00015688	-0.26027	-0.00013397	514.7555954405464	17.872	0.4964	17.812	17.56	18.056	-0.060429					22	17	2	0	0	0	0.31926	1	1699	1699		5.7319	2.8426	1	28500			17547	12108	9843	9844	22401	22401					-0.01518822827756594
KAFLEARQS	9	Unmodified	_KAFLEARQS_					0	0	0		ENSG00000138031|ENST00000679454|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2904052734375	2	525.290548	1048.56654	0.12567	6.6011E-05	-0.22032	-0.00011573	-0.094657	-4.9723E-05	525.2907532475605	13.278	0.70149	13.178	13.042	13.743	-0.09929					81	24	5	0	0	0	0.088443	1	460	460		39.95	4.3374	1	4432800			17548	4107	9844	9845	22402	22402					0.044202611917853574
KAFLLCLSF	9	Unmodified	_KAFLLCLSF_					0	0	0			REV__ENSG00000160190|ENST00000352133|SLC37A1;REV__nc|ENSG00000134955|Q8TED4-2|SLC37A2	REV__ENSG00000160190|ENST00000352133|SLC37A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7562255859375	2	521.293714	1040.57287	0.098974	5.1595E-05	1.6424	0.00085616	1.7414	0.00090776	521.7952572054006	81.258	0.069412	81.327	81.281	81.35	0.068993					5	3	2	0	0	0	0.24913	1	21150	21150		12.532	0.89125	1	37418	+		17549	16885;15713	9845	9846	22403	22403					0.05421063098947343
KAFNQGKIFK	10	Unmodified	_KAFNQGKIFK_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.8457641601562	2	590.84549	1179.67643	0.1667	9.8494E-05	0.32211	0.00019032	0.48881	0.00028881	590.8456397546382	22.91	0.8539	22.91	22.594	23.448	0					92	29	4	0	0	0	0.0023784	4	3293	3243;3293;3344;3394		106.94	68.765	1	987120			17550	8613	9846	9847	22404;22405;22406;22407	22405					0.09377686530956453
KAFNQGKIFK	10	Unmodified	_KAFNQGKIFK_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.845703125	2	590.84549	1179.67643	0.17225	0.00010177	0.23856	0.00014095	0.41081	0.00024273	590.845607442612	23.023	0.88674	22.936	22.628	23.515	-0.087608					91	31	4	0	0	0	0.0023784	3	3333	3283;3333;3390		106.94	61.241	1	1093000			17551	8613	9846	9847	22408;22409;22410	22409					0.09377686530956453
KAFNQGKIFK	10	Unmodified	_KAFNQGKIFK_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.845703125	2	590.84549	1179.67643	0.30457	0.00017995	0.16322	9.6438E-05	0.46779	0.00027639	590.8455228885639	23.04	0.84739	22.995	22.709	23.556	-0.044867					91	30	4	0	0	0	2.3871E-05	3	3325	3282;3325;3375		142.08	84.358	1	1098600			17552	8613	9846	9847	22411;22412;22413	22412					0.09377686530956453
KAFPFYNTV	9	Unmodified	_KAFPFYNTV_					0	0	0		ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7843017578125	2	543.784567	1085.55458	0.83975	0.00045665	-1.441	-0.00078359	-0.60124	-0.00032694	543.7837362336987	54.752	0.50891	54.752	54.435	54.943	0					51	18	3	0	0	0	0.0028032	2	12981	12981;13041		103.82	71.518	1	961490			17553	8585	9847	9848	22414;22415	22414					0.01522644448596111
KAFPFYNTV	9	Unmodified	_KAFPFYNTV_					0	0	0		ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3001708984375	2	543.784567	1085.55458	0.95418	0.00051887	-1.2395	-0.00067402	-0.28531	-0.00015515	543.7835858278203	55.008	0.71763	54.992	54.575	55.293	-0.015923					57	26	4	0	0	0	0.099099	1	13093	13093		40.239	14.84	1	1015500			17554	8585	9847	9848	22416	22416					0.01522644448596111
KAFQATQQK	9	Unmodified	_KAFQATQQK_					0	0	0		ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2907104492188	2	525.290548	1048.56654	0.17493	9.1887E-05	-0.41404	-0.00021749	-0.23911	-0.0001256	525.2906437091916	13.215	0.7091	13.215	13.058	13.767	0					76	24	5	0	0	0	1.2732000000000002E-25	2	343	343;391		249.55	171.4	1	3909300			17555	4648	9848	9849	22417;22418	22417					0.044202611917853574
KAFQATQQK	9	Unmodified	_KAFQATQQK_					0	0	0		ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.320068359375	2	525.290548	1048.56654	0.12567	6.6011E-05	-0.22032	-0.00011573	-0.094657	-4.9723E-05	525.2907532475605	13.278	0.70149	13.178	13.042	13.743	-0.09929					81	24	5	0	0	0	8.5057E-24	3	357	357;364;412		233.47	161.55	1	4432800			17556	4648	9848	9849	22419;22420;22421	22419					0.044202611917853574
KAFQATQQK	9	Unmodified	_KAFQATQQK_					0	0	0		ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	ENSG00000145391|ENST00000274031|SETD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2908935546875	2	525.290548	1048.56654	0.11178	5.8717E-05	-0.29562	-0.00015528	-0.18384	-9.6567E-05	525.2907172833898	13.271	0.72428	13.203	13.022	13.746	-0.067496					73	25	4	0	0	0	8.5057E-24	3	355	355;400;445		233.47	159.05	1	3957700			17557	4648	9848	9849	22422;22423;22424	22422					0.044202611917853574
KAFQEGIAK	9	Unmodified	_KAFQEGIAK_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2821960449219	2	496.282192	990.549831	0.34588	0.00017166	0.28642	0.00014214	0.6323	0.0003138	496.2822312834066	19.606	0.61224	19.49	19.145	19.758	-0.11592					35	20	2	0	0	0	0.22935	1	2274	2274		19.362	4.1135	1	94876			17558	412	9849	9850	22425	22425					0.054177603058633395
KAFQEGIAK	9	Unmodified	_KAFQEGIAK_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2823791503906	2	496.282192	990.549831	0.33259	0.00016506	0.15741	7.812E-05	0.49	0.00024318	496.282111107712	19.485	0.56034	19.429	19.144	19.705	-0.055693					41	19	3	0	0	0	0.26278	1	2254	2254		14.405	2.1647	1	119050			17559	412	9849	9850	22426	22426					0.054177603058633395
KAFQEGIAK	9	Unmodified	_KAFQEGIAK_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	496.282192	990.549831	0.21407	0.00010624	0.23606	0.00011715	0.45013	0.00022339	496.2821773647299	19.38	0.52977	19.38	19.125	19.655	0	-0.053314	2.7817E-05	NaN	19.362	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103890			17560	412	9849	9850							0.054177603058633395
KAFQKCQR	8	Unmodified	_KAFQKCQR_					0	0	0			REV__nc|ENSG00000133107|Q9UBN4-7|TRPC4	REV__nc|ENSG00000133107|Q9UBN4-7|TRPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7731628417969	2	504.774011	1007.53347	0.5893	0.00029746	-1.2242	-0.00061797	-0.63494	-0.0003205	504.77335137702414	41.538	1.0375	41.634	41.259	42.297	0.096622					49	40	2	0	0	0	0.43043	1	8915	8915		12.532	0	1	3750900	+		17561	15607	9850	9851	22427	22427					0.030003558681073628
KAFRHKFRLP	10	Unmodified	_KAFRHKFRLP_					0	0	0		nc|ENSG00000005189|Q96IC2-2|REXO5;ENSG00000005189|ENST00000261377|REXO5;ENST00000567297.5_1_16:20818275-20837201:+|nuORF	nc|ENSG00000005189|Q96IC2-2|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.9327697753906	3	433.931408	1298.77239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.603	1	85.688	85.188	86.188	0.084251								0	0	0	0.38065	1	22486	22486		1.9064	0.69154	1				17562	328	9851	9852	22428	22428					0.13495879161746416
KAFRHKFRLP	10	Unmodified	_KAFRHKFRLP_					0	0	0		nc|ENSG00000005189|Q96IC2-2|REXO5;ENSG00000005189|ENST00000261377|REXO5;ENST00000567297.5_1_16:20818275-20837201:+|nuORF	nc|ENSG00000005189|Q96IC2-2|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.93280029296875	3	433.931408	1298.77239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.765	1	85.756	85.256	86.256	-0.0090027								0	0	0	0.38065	1	22527	22527		1.9064	0.1641	1				17563	328	9851	9852	22429	22429					0.13495879161746416
KAFRLHMHLI	10	Unmodified	_KAFRLHMHLI_					0	0	0		ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A;ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000197782|ENST00000683561|ZNF780A	ENSG00000197782|ENST00000683561|ZNF780A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3681030273438	2	633.36861	1264.72267	0.58237	0.00036885	0.59717	0.00037823	1.1795	0.00074708	633.3689233997898	93.68	1.2785	93.679	93.227	94.506	-0.00051117					157	100	2	0	0	0	0.39935	1	25111	25111		3.5965	3.5965	1	199080			17564	3346	9852	9853	22430	22430					0.1008942816142735
KAFSEQANHK	10	Unmodified	_KAFSEQANHK_					0	0	0			REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171	REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.2650756835938	2	580.296362	1158.57817	0.05803	3.3675E-05	-1.6187	-0.00093933	-1.5607	-0.00090565	580.296384053901	27.439	0.48322	27.417	27.158	27.641	-0.02141					23	16	3	0	0	0	0.32072	1	4624	4624		2.9952	0.69251	1	141180	+		17565	17199	9853	9854	22431	22431					0.005224582151413415
KAFTPFSGPK	10	Unmodified	_KAFTPFSGPK_					0	0	0		nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD;nc|ENSG00000124299|P12955-3|PEPD;ENST00000593085.1_1_19:33878252-33879176:-|nuORF	nc|ENSG00000124299|P12955-2|PEPD	nc|ENSG00000124299|P12955-2|PEPD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.298095703125	2	540.297842	1078.58113	0.73963	0.00039962	0.18789	0.00010151	0.92752	0.00050114	540.2976940143907	32.435	1.0883	32.435	32.171	33.259	0					103	38	5	0	0	0	0.0058776	3	6198	6152;6198;6248		87.123	45.029	1	2055500			17566	3151	9854	9855	22432;22433;22434	22433					0.04498333339938654
KAFTPFSGPK	10	Unmodified	_KAFTPFSGPK_					0	0	0		nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD;nc|ENSG00000124299|P12955-3|PEPD;ENST00000593085.1_1_19:33878252-33879176:-|nuORF	nc|ENSG00000124299|P12955-2|PEPD	nc|ENSG00000124299|P12955-2|PEPD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.298095703125	2	540.297842	1078.58113	0.76392	0.00041274	0.18449	9.9681E-05	0.94841	0.00051242	540.2977205683374	32.363	0.9648	32.418	32.126	33.091	0.055309					94	34	4	0	0	0	0.002	3	6130	6130;6175;6255		109.15	38.814	1	2155000			17567	3151	9854	9855	22435;22436;22437	22435					0.04498333339938654
KAFTPFSGPK	10	Unmodified	_KAFTPFSGPK_					0	0	0		nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD;nc|ENSG00000124299|P12955-3|PEPD;ENST00000593085.1_1_19:33878252-33879176:-|nuORF	nc|ENSG00000124299|P12955-2|PEPD	nc|ENSG00000124299|P12955-2|PEPD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2981567382812	2	540.297842	1078.58113	0.56889	0.00030737	0.36222	0.00019571	0.93111	0.00050308	540.2978016685751	32.382	0.93255	32.437	32.136	33.069	0.054371					89	33	4	0	0	0	0.002	3	6137	6137;6184;6234		109.15	47.544	1	2307900			17568	3151	9854	9855	22438;22439;22440	22438					0.04498333339938654
KAGEVFIHK	9	Unmodified	_KAGEVFIHK_					0	0	0		ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000566277.2_1_16:69791529-69791679:-|nuORF	ENST00000566277.2_1_16:69791529-69791679:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.798095703125	2	514.798009	1027.58147	0.27086	0.00013944	-0.033362	-1.7175E-05	0.2375	0.00012226	514.7978662978143	17.585	0.61205	17.585	17.318	17.93	0					46	20	3	0	0	0	0.22215	2	1704	1651;1704		20.415	7.8672	1	282910			17569	4750	9855	9856	22441;22442	22442					0.06877753059779934
KAGEVFIHK	9	Unmodified	_KAGEVFIHK_					0	0	0		ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000566277.2_1_16:69791529-69791679:-|nuORF	ENST00000566277.2_1_16:69791529-69791679:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7979736328125	2	514.798009	1027.58147	0.051667	2.6598E-05	0.059406	3.0582E-05	0.11107	5.718E-05	514.7979203572957	17.726	0.62557	17.609	17.386	18.012	-0.11739					46	21	3	0	0	0	0.086462	2	1708	1708;1762		40.239	20.8	1	378000			17570	4750	9855	9856	22443;22444	22443					0.06877753059779934
KAGEVFIHK	9	Unmodified	_KAGEVFIHK_					0	0	0		ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO	ENST00000566277.2_1_16:69791529-69791679:-|nuORF	ENST00000566277.2_1_16:69791529-69791679:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7980346679688	2	514.798009	1027.58147	0.091056	4.6876E-05	-0.0033906	-1.7455E-06	0.087666	4.513E-05	514.7979837012718	17.731	0.75479	17.671	17.414	18.169	-0.060429					46	26	2	0	0	0	0.25112	1	1744	1744		16.149	3.9084	1	298670			17571	4750	9855	9856	22445	22445					0.06877753059779934
KAGGGGGG	8	Unmodified	_KAGGGGGG_					0	0	0		ENST00000301730.12_3_16:2314685-2318093:-|nuORF;ENST00000320225.9_2_16:2314685-2318195:-|nuORF;ENST00000568506.1_1_16:30194950-30195564:-|nuORF;ENST00000570051.5_1_16:2312273-2318093:-|nuORF	ENST00000301730.12_3_16:2314685-2318093:-|nuORF	ENST00000301730.12_3_16:2314685-2318093:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2789306640625	1	560.2787	559.271424	0.39689	0.00022237	-4.1205	-0.0023086	-3.7236	-0.0020862	560.2786278591091	45.158	0.90029	45.158	44.739	45.64	0					60	32	4	0	0	0	0.46461	1	10061	10061		0.79363	0	1	676310			17572	9226	9856	9857	22446	22446					-0.025841021563337563
KAGPAIPTP	9	Unmodified	_KAGPAIPTP_					0	0	0		nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2;ENST00000470046.1_1_22:50881704-50882673:+|nuORF	nc|ENSG00000100239|O75170-6|PPP6R2	nc|ENSG00000100239|O75170-6|PPP6R2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.86065673828125	2	426.252903	850.491253	-0.070934	-3.0236E-05	-0.95845	-0.00040854	-1.0294	-0.00043878	426.25279727922054	24.499	0.2938	24.427	24.234	24.527	-0.072559					12	9	2	0	0	0	0.25526	1	3775	3775		4.3292	0	1	31058			17573	1549	9857	9858	22447	22447					0.060027037313602705
KAGRKRAS	8	Unmodified	_KAGRKRAS_					0	0	0		TSPYL1|p.Q98Rfs*17|1|0.2|ENSG00000189241|chr6:116279540-116279540|C/-|frameshift_variant	TSPYL1|p.Q98Rfs*17|1|0.2|ENSG00000189241|chr6:116279540-116279540|C/-|frameshift_variant	TSPYL1|p.Q98Rfs*17|1|0.2|ENSG00000189241|chr6:116279540-116279540|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2578430175781	2	437.272493	872.530432	0.065442	2.8616E-05	0.091236	3.9895E-05	0.15668	6.8511E-05	437.2725067266218	72.912	1.0173	72.912	72.56	73.578	0					55	36	2	0	0	0	0.34437	1	18634	18634		0.69038	0	1	146220			17574	23404	9858	9859	22448	22448					0.08906848805611389
KAHLGTALK	9	Unmodified	_KAHLGTALK_					0	0	0		ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7926025390625	2	469.792727	937.5709	-0.24799	-0.0001165	0.25188	0.00011833	0.0038951	1.8299E-06	469.7926145540159	14.556	0.27728	14.556	14.423	14.701	0					23	9	3	0	0	0	0.22101	1	762	762		20.581	5.3325	1	113040			17575	7619	9859	9860	22449	22449					0.09961770405357129
KAHLGTALK	9	Unmodified	_KAHLGTALK_					0	0	0		ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7926330566406	2	469.792727	937.5709	-0.15585	-7.3215E-05	0.30976	0.00014552	0.15391	7.2307E-05	469.7925550289597	14.646	0.49914	14.541	14.212	14.711	-0.10466					28	16	3	0	0	0	0.20679	1	792	792		22.658	1.1211	1	129550			17576	7619	9859	9860	22450	22450					0.09961770405357129
KAHLGTALK	9	Unmodified	_KAHLGTALK_					0	0	0		ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7924499511719	2	469.792727	937.5709	-0.10288	-4.8332E-05	0.046591	2.1888E-05	-0.056288	-2.6444E-05	469.7924786945869	14.674	0.36164	14.608	14.427	14.788	-0.066068					24	12	3	0	0	0	0.17555	1	791	791		27.223	5.6863	1	121770			17577	7619	9859	9860	22451	22451					0.09961770405357129
KAIIRMLKHNK	11	Unmodified	_KAIIRMLKHNK_					0	0	0			REV__ENST00000466825.1_1_17:16101635-16101743:-|nuORF	REV__ENST00000466825.1_1_17:16101635-16101743:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7766418457031	3	451.283341	1350.82819	0.23955	0.00010811	-0.49452	-0.00022317	-0.25497	-0.00011506	451.2831113707437	58.129	0.59591	58.129	57.904	58.5	0					29	20	2	0	0	0	0.33296	1	14125	14125		1.2148	1.2148	1	191730	+		17578	21289	9860	9861	22452	22452					0.16681344287030697
KAIITENWVLN	11	Unmodified	_KAIITENWVLN_					0	0	0		nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.9380187988281	3	434.246839	1299.71869	-0.324	-0.0001407	0.94205	0.00040908	0.61805	0.00026839	434.24738682600344	30.494	0.30488	30.521	30.364	30.669	0.027157					15	10	2	0	0	0	0.3325	1	5561	5561		4.1166	1.0444	1	126510			17579	12569	9861	9862	22453	22453					0.08081617148718578
KAIKEPTVYIL	11	Unmodified	_KAIKEPTVYIL_					0	0	0			REV__ENSG00000004700|ENST00000444129|RECQL	REV__ENSG00000004700|ENST00000444129|RECQL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.2635192871094	3	425.595468	1273.76457	-0.043189	-1.8381E-05	-1.1794	-0.00050195	-1.2226	-0.00052033	425.59487917317136	16.644	0.28759	16.581	16.442	16.729	-0.062534					14	9	2	0	0	0	0.33207	1	1422	1422		5.5233	0.80737	1	73729	+		17580	13333	9862	9863	22454	22454					0.138642623309579
KAISRALVT	9	Unmodified	_KAISRALVT_					0	0	0			REV__nc|ENSG00000144381|P10809-2|HSPD1	REV__nc|ENSG00000144381|P10809-2|HSPD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.8056945800781	2	479.805834	957.597115	0.0097872	4.6959E-06	-0.24132	-0.00011579	-0.23153	-0.00011109	479.8056769916417	18.225	0.36109	18.167	17.98	18.341	-0.058174					23	12	2	0	0	0	0.31763	1	1896	1896		6.2058	0	1	94461	+		17581	16231	9863	9864	22455	22455					0.11662039576845018
KAIWTELT	8	Unmodified	_KAIWTELT_					0	0	0			REV__ENST00000519338.1_1_8:82614932-82615299:-|nuORF	REV__ENST00000519338.1_1_8:82614932-82615299:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.283447265625	2	481.271293	960.528032	0.40399	0.00019443	-1.3459	-0.00064774	-0.94191	-0.00045332	481.27055818177945	90.674	0.24117	90.675	90.487	90.728	0.0003891					26	17	2	0	0	0	0.45942	1	24007	24007		2.5775	0	1	72027	+		17582	14398	9864	9865	22456	22456					0.04618955557270965
KAKDFMPA	8	Unmodified	_KAKDFMPA_					0	0	0		ENSG00000070366|ENST00000263073|SMG6;nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6;ENST00000573153.5_1_17:1964788-1969297:-|nuORF	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.25872802734375	2	454.238938	906.463324	0.063795	2.8978E-05	2.7507	0.0012495	2.8145	0.0012785	454.2396507824519	17.646	0.58436	17.586	17.472	18.056	-0.060429					30	20	3	0	0	0	0.34337	1	1780	1780		5.2307	0.47466	1	36878			17583	921	9865	9866	22457	22457					0.006350574796329056
KAKERVNV	8	Unmodified	_KAKERVNV_					0	0	0			REV__nc|ENSG00000063245|Q9Y6I3-3|EPN1	REV__nc|ENSG00000063245|Q9Y6I3-3|EPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2758483886719	2	472.287808	942.561064	0.31406	0.00014833	-0.97585	-0.00046088	-0.66179	-0.00031256	472.2870496322931	84.954	1.922	84.954	84.584	86.506	0					155	74	3	0	0	0	0.45307	1	22717	22717		4.756	2.4533	1	9110500	+		17584	13640	9866	9867	22458	22458					0.0874858239999412
KAKKKWRKDS	10	Unmodified	_KAKKKWRKDS_					0	0	0		ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2	ENST00000480912.5_1_6:31847863-31860642:-|nuORF	ENST00000480912.5_1_6:31847863-31860642:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.2633972167969	3	425.594573	1273.76189	-0.14503	-6.1725E-05	0.88395	0.0003762	0.73891	0.00031448	425.59495033814693	16.725	0.31604	16.725	16.433	16.749	0					19	10	2	0	0	0	0.31867	1	1419	1419		7.9454	1.711	1	70674			17585	8220	9867	9868	22459	22459					0.13595851716650031
KAKKLKARH	9	Unmodified	_KAKKLKARH_					0	0	0			REV__ENSG00000204595|ENST00000376650|DPRX	REV__ENSG00000204595|ENST00000376650|DPRX	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3635864257812	2	540.361642	1078.70873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.618	1	38.715	38.215	39.215	0.097527								0	0	0	0.2575	1	8061	8061		3.9444	1.8846	1		+		17586	18955	9868	9869	22460	22460					0.17252518724649235
KAKLKENRN	9	Unmodified	_KAKLKENRN_					0	0	0		ENST00000555916.1_1_14:74389420-74404769:-|nuORF;ENSG00000156050|ENST00000286544|FAM161B;nc|ENSG00000156050|Q96MY7-2|FAM161B	ENST00000555916.1_1_14:74389420-74404769:-|nuORF	ENST00000555916.1_1_14:74389420-74404769:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3292236328125	2	550.830372	1099.64619	0.22145	0.00012198	0.90903	0.00050072	1.1305	0.0006227	550.83092024417	23.668	0.69302	23.668	23.25	23.943	0					32	23	2	0	0	0	0.25988	1	3495	3495		3.9444	0	1	162450			17587	5217	9869	9870	22461	22461					0.10035327865784893
KAKNGQINK	9	Unmodified	_KAKNGQINK_					0	0	0		ENST00000370292.3_X:151922458-151927474:+|nuORF	ENST00000370292.3_X:151922458-151927474:+|nuORF	ENST00000370292.3_X:151922458-151927474:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.79864501953125	2	500.79854	999.582528	0.18942	9.4859E-05	-0.023409	-1.1723E-05	0.16601	8.3136E-05	500.79845936852774	18.574	0.70265	18.574	18.363	19.066	0					53	24	3	0	0	0	0.15219	1	1978	1978		30.637	2.1497	1	153330			17588	9796	9870	9871	22462	22462					0.08271967428709104
KAKNGQINK	9	Unmodified	_KAKNGQINK_					0	0	0		ENST00000370292.3_X:151922458-151927474:+|nuORF	ENST00000370292.3_X:151922458-151927474:+|nuORF	ENST00000370292.3_X:151922458-151927474:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2666931152344	2	500.79854	999.582528	0.16411	8.2184E-05	0.0011478	5.7483E-07	0.16525	8.2759E-05	500.79846037008315	18.734	0.55829	18.617	18.387	18.946	-0.11739					49	19	4	0	0	0	0.24688	1	2070	2070		14.838	0.93222	1	182250			17589	9796	9870	9871	22463	22463					0.08271967428709104
KAKNGQINK	9	Unmodified	_KAKNGQINK_					0	0	0		ENST00000370292.3_X:151922458-151927474:+|nuORF	ENST00000370292.3_X:151922458-151927474:+|nuORF	ENST00000370292.3_X:151922458-151927474:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.26654052734375	2	500.79854	999.582528	-0.012574	-6.297E-06	0.1963	9.8305E-05	0.18372	9.2008E-05	500.7986078118601	18.68	0.58261	18.621	18.432	19.014	-0.058174					50	20	4	0	0	0	0.21389	1	2039	2039		25.399	2.663	1	200290			17590	9796	9870	9871	22464	22464					0.08271967428709104
KAKQSVGKF	9	Unmodified	_KAKQSVGKF_					0	0	0			REV__nc|ENSG00000038382|O75962-2|TRIO	REV__nc|ENSG00000038382|O75962-2|TRIO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.22869873046875	2	496.798009	991.581465	0.66108	0.00032842	0.10811	5.3707E-05	0.76919	0.00038213	496.7982021913005	33.756	0.40213	33.756	33.538	33.94	0					35	14	3	0	0	0	0.24636	1	6632	6632		16.149	0	1	327930	+		17591	13516	9871	9872	22465	22465					0.08533753059816718
KAKVKGKA	8	Unmodified	_KAKVKGKA_					0	0	0			REV__nc|ENSG00000135766|Q9GZT9-2|EGLN1	REV__nc|ENSG00000135766|Q9GZT9-2|EGLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.2841491699219	2	415.284537	828.554522	-0.0686	-2.8488E-05	-0.54175	-0.00022498	-0.61035	-0.00025347	415.2841976443736	18.889	0.33204	18.831	18.654	18.986	-0.058174					20	11	2	0	0	0	0.45307	1	2089	2089		4.756	0	1	70154	+		17592	15762	9872	9873	22466	22466					0.1333868923927639
KAKVKGKA	8	Unmodified	_KAKVKGKA_					0	0	0			REV__nc|ENSG00000135766|Q9GZT9-2|EGLN1	REV__nc|ENSG00000135766|Q9GZT9-2|EGLN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	415.284537	828.554522	-0.21524	-8.9386E-05	-0.28367	-0.0001178	-0.49891	-0.00020719	415.28444721289594	18.761	0.44329	18.761	18.563	19.006	0	-0.029308	0.00013721	NaN	4.756	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49589	+		17593	15762	9872	9873							0.1333868923927639
KAKVKGKA	8	Unmodified	_KAKVKGKA_					0	0	0			REV__nc|ENSG00000135766|Q9GZT9-2|EGLN1	REV__nc|ENSG00000135766|Q9GZT9-2|EGLN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	415.284537	828.554522	0.08737	3.6283E-05	-0.95636	-0.00039716	-0.86899	-0.00036088	415.28402360993584	18.897	0.4478	18.78	18.582	19.03	-0.11739	-0.010898	-0.0004215	NaN	4.756	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49884	+		17594	15762	9872	9873							0.1333868923927639
KAKVKGKA	8	Unmodified	_KAKVKGKA_					0	0	0			REV__nc|ENSG00000135766|Q9GZT9-2|EGLN1	REV__nc|ENSG00000135766|Q9GZT9-2|EGLN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	415.284537	828.554522	-0.0686	-2.8488E-05	-0.54175	-0.00022498	-0.61035	-0.00025347	415.2841976443736	18.889	0.33204	18.831	18.654	18.986	-0.058174	0.040205	-7.7149E-05	NaN	4.756	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70154	+		17595	15762	9872	9873							0.1333868923927639
KAKYSTPAT	9	Unmodified	_KAKYSTPAT_					0	0	0		DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant;ENSG00000178105|ENST00000322536|DDX10	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7845153808594	2	483.766374	965.518196	0.14916	7.2158E-05	0.16484	7.9742E-05	0.314	0.0001519	483.7664252026555	19.422	0.36886	19.306	19.145	19.514	-0.11592					18	12	2	0	0	0	0.26068	1	2273	2273		3.2813	0.70383	1	37027			17596	260	9873	9874	22467	22467					0.03405767551907957
KALASKWEK	9	Unmodified	_KALASKWEK_					0	0	0			REV__ENSG00000184786|ENST00000366774|DYNLT2	REV__ENSG00000184786|ENST00000366774|DYNLT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.810302734375	2	530.811116	1059.60768	0.49788	0.00026428	2.3976	0.0012727	2.8955	0.0015369	530.812410128384	20.171	0.73755	20.055	19.579	20.316	-0.11592					54	26	3	0	0	0	0.33508	1	2385	2385		3.5965	0.31518	1	277440	+		17597	18332	9874	9875	22468	22468					0.0802602223127451
KALDKDQYLPR	11	Unmodified	_KALDKDQYLPR_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.58538818359375	3	449.585743	1345.7354	-0.1476	-6.636E-05	-0.88341	-0.00039717	-1.031	-0.00046353	449.5855140473935	28.067	0.80001	28.067	27.589	28.389	0					63	27	3	0	0	0	0.44088	1	4913	4913		5.8681	3.2369	1	256380			17598	6752	9875	9876	22469	22469					0.0763611803463391
KALDKDQYLPR	11	Unmodified	_KALDKDQYLPR_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	449.585743	1345.7354	-0.13706	-6.162E-05	-0.92824	-0.00041732	-1.0653	-0.00047894	449.58547788845584	27.97	0.59637	27.966	27.737	28.333	-0.0042572	-0.046075	9.4851E-06	NaN	5.8681	52	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260940			17599	6752	9875	9876							0.0763611803463391
KALDKDQYLPR	11	Unmodified	_KALDKDQYLPR_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	449.585743	1345.7354	-0.1746	-7.8499E-05	-0.99716	-0.00044831	-1.1718	-0.00052681	449.5854842994135	28.003	0.78421	28.004	27.567	28.351	0.00046921	-0.0084824	-8.3476E-05	NaN	5.8681	60	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259720			17600	6752	9875	9876							0.0763611803463391
KALEAVFGK	9	Unmodified	_KALEAVFGK_					0	0	0		nc|ENSG00000147274|P38159-3|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;ENST00000565907.1_1_X:135961433-135961586:-|nuORF;nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-3|RBMX;nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.78729248046875	2	481.78711	961.559667	0.45266	0.00021809	0.44082	0.00021238	0.89348	0.00043047	481.78719015841625	32.538	0.56004	32.538	32.251	32.811	0					50	19	3	0	0	0	0.00085826	1	6202	6202		124.95	64.879	1	416470			17601	4760;12747	9876	9877	22470	22470					0.07734948311235712
KALEAVFGK	9	Unmodified	_KALEAVFGK_					0	0	0		nc|ENSG00000147274|P38159-3|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;ENST00000565907.1_1_X:135961433-135961586:-|nuORF;nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-3|RBMX;nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7870178222656	2	481.78711	961.559667	0.51501	0.00024812	0.40756	0.00019636	0.92257	0.00044448	481.7871015064217	32.439	0.49819	32.495	32.206	32.704	0.055309					43	17	3	0	0	0	0.045138	1	6160	6160		79.427	25.594	1	536290			17602	4760;12747	9876	9877	22471	22471					0.07734948311235712
KALEAVFGK	9	Unmodified	_KALEAVFGK_					0	0	0		nc|ENSG00000147274|P38159-3|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;ENST00000565907.1_1_X:135961433-135961586:-|nuORF;nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-3|RBMX;nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	481.78711	961.559667	0.30039	0.00014472	0.51138	0.00024638	0.81177	0.0003911	481.7871967606598	32.45	0.62691	32.504	32.223	32.85	0.054371	-0.0081805	5.231E-05	NaN	124.95	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	470700			17603	4760;12747	9876	9877							0.07734948311235712
KALELLPK	8	Unmodified	_KALELLPK_					0	0	0		ENST00000342222.6_1_8:42151073-42188494:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB	ENST00000342222.6_1_8:42151073-42188494:+|nuORF	ENST00000342222.6_1_8:42151073-42188494:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.79217529296875	2	456.299853	910.585153	-0.56566	-0.00025811	1.8416	0.00084034	1.276	0.00058223	456.30077137046953	34.609	0.44201	34.686	34.533	34.975	0.077377					26	15	3	0	0	0	0.45431	1	6831	6831		4.3292	0	1	146130			17604	1885	9877	9878	22472	22472					0.1262842283366581
KALELLPK	8	Unmodified	_KALELLPK_					0	0	0		ENST00000342222.6_1_8:42151073-42188494:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB	ENST00000342222.6_1_8:42151073-42188494:+|nuORF	ENST00000342222.6_1_8:42151073-42188494:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	456.299853	910.585153	-1.2762	-0.00058232	2.702	0.0012329	1.4258	0.00065058	456.3010456243386	34.801	0.76411	34.801	34.618	35.382	0	0.065349	8.2688E-05	NaN	4.3292	35	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112910			17605	1885	9877	9878							0.1262842283366581
KALELLPK	8	Unmodified	_KALELLPK_					0	0	0		ENST00000342222.6_1_8:42151073-42188494:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB	ENST00000342222.6_1_8:42151073-42188494:+|nuORF	ENST00000342222.6_1_8:42151073-42188494:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	456.299853	910.585153	-1.4519	-0.00066251	2.7393	0.0012499	1.2874	0.00058744	456.3011071815522	34.644	0.5205	34.719	34.576	35.097	0.075306	-0.016155	0.00011677	NaN	4.3292	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141560			17606	1885	9877	9878							0.1262842283366581
KALFRKIRFTK	11	Unmodified	_KALFRKIRFTK_					0	0	0			REV__ENSG00000198918|ENST00000361575|RPL39	REV__ENSG00000198918|ENST00000361575|RPL39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2426452636719	3	469.969751	1406.88742	0.13614	6.398E-05	-0.26686	-0.00012542	-0.13073	-6.1437E-05	469.9695945881581	29.212	1.4718	29.224	28.616	30.088	0.012266					70	50	2	0	0	0	0.33339	1	5189	5189		1.0136	0	1	131530	+		17607	18890	9878	9879	22473	22473					0.20025563572858118
KALFRKIRFTK	11	Unmodified	_KALFRKIRFTK_					0	0	0			REV__ENSG00000198918|ENST00000361575|RPL39	REV__ENSG00000198918|ENST00000361575|RPL39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.2768859863281	3	469.969751	1406.88742	0.018987	8.9235E-06	-0.24615	-0.00011568	-0.22716	-0.00010676	469.96964456020015	30.813	1.2418	30.84	30.109	31.351	0.027157					67	44	2	0	0	0	0.33346	1	5520	5520		0.50596	0	1	109100	+		17608	18890	9878	9879	22474	22474					0.20025563572858118
KALGPAPGP	9	Unmodified	_KALGPAPGP_					0	0	0			REV__ENSG00000164742|ENST00000297323|ADCY1	REV__ENSG00000164742|ENST00000297323|ADCY1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.5834655761719	2	404.239796	806.465038	-0.23655	-9.5623E-05	0.70404	0.0002846	0.46748	0.00018898	404.2401049141419	19.531	0.39264	19.531	19.375	19.768	0					22	13	2	0	0	0	0.25938	1	2325	2325		4.3292	0	1	28485	+		17609	17177	9879	9880	22475	22475					0.05406434559904483
KALGPAPGP	9	Unmodified	_KALGPAPGP_					0	0	0			REV__ENSG00000164742|ENST00000297323|ADCY1	REV__ENSG00000164742|ENST00000297323|ADCY1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	404.239796	806.465038	-0.049057	-1.9831E-05	1.552	0.00062737	1.5029	0.00060754	404.23997729682674	19.71	0.30997	19.654	19.452	19.762	-0.055693	0.061712	0.00032203	NaN	4.3292	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25435	+		17610	17177	9879	9880							0.05406434559904483
KALLPSPDFN	10	Unmodified	_KALLPSPDFN_					0	0	0			REV__ENST00000261254.7_1_12:4412550-4412766:+|nuORF	REV__ENST00000261254.7_1_12:4412550-4412766:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.7855834960938	2	551.300581	1100.58661	0.37537	0.00020694	1.257	0.00069298	1.6324	0.00089992	551.3010607900004	68.135	1.1939	68.135	67.757	68.951	0					60	43	2	0	0	0	0.34325	1	17065	17065		13.906	0.39817	1	1373900	+		17611	19588	9880	9881	22476	22476					0.04034012131751297
KALLPSPDFN	10	Unmodified	_KALLPSPDFN_					0	0	0			REV__ENST00000261254.7_1_12:4412550-4412766:+|nuORF	REV__ENST00000261254.7_1_12:4412550-4412766:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	551.300581	1100.58661	0.37537	0.00020694	1.257	0.00069298	1.6324	0.00089992	551.3010607900004	68.135	1.1939	68.135	67.757	68.951	0	-0.018389	-0.00015584	NaN	13.906	60	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1373900	+		17612	19588	9880	9881							0.04034012131751297
KALLPSPDFN	10	Unmodified	_KALLPSPDFN_					0	0	0			REV__ENST00000261254.7_1_12:4412550-4412766:+|nuORF	REV__ENST00000261254.7_1_12:4412550-4412766:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	551.300581	1100.58661	0.45159	0.00024896	1.4654	0.00080785	1.9169	0.0010568	551.3012177102114	68.094	0.71463	68.172	67.802	68.517	0.078041	0.018389	7.3904E-05	NaN	13.906	42	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1218600	+		17613	19588	9880	9881							0.04034012131751297
KALLYYLQTLK	11	Unmodified	_KALLYYLQTLK_					0	0	0			REV__ENSG00000144843|ENST00000357003|ADPRH	REV__ENSG00000144843|ENST00000357003|ADPRH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.5541687011719	3	451.942868	1352.80677	0.29342	0.00013261	-0.36632	-0.00016556	-0.072906	-3.2949E-05	452.2763248795183	49.357	1.2041	49.357	48.749	49.953	0					107	43	3	0	0	0	0.3287	1	11180	11180		12.228	6.3594	1	477290	+		17614	16266	9881	9882	22477	22477					0.1444823773929329
KALMRFAF	8	Unmodified	_KALMRFAF_					0	0	0		ENSG00000123684|ENST00000366997|LPGAT1	ENSG00000123684|ENST00000366997|LPGAT1	ENSG00000123684|ENST00000366997|LPGAT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2640075683594	2	492.278398	982.542243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.318	1	52.318	51.818	52.818	-0.00080872								0	0	0	0.36336	1	12265	12265		8.5933	2.2392	1				17615	3121	9882	9883	22478	22478					0.05027329504582667
KAMKPNWTF	9	Unmodified	_KAMKPNWTF_					0	0	0			REV__ENST00000283195.10_1_2:109367774-109367846:+|nuORF	REV__ENST00000283195.10_1_2:109367774-109367846:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.78076171875	2	561.791869	1121.56919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.738	1	83.721	83.221	84.221	-0.016823								0	0	0	0.2362	1	21906	21906		10.824	0.75	1		+		17616	19724	9883	9884	22479	22479					0.013263933250982518
KAMKTKPLFN	10	Unmodified	_KAMKTKPLFN_					0	0	0			REV__ENSG00000127362|ENST00000247879|TAS2R3	REV__ENSG00000127362|ENST00000247879|TAS2R3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3417358398438	2	589.341726	1176.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.176	1	95.176	94.676	95.676	0								0	0	0	0.37355	1	25405	25405		4.897	1.3005	1		+		17617	15338	9884	9885	22480	22480					0.08763210939059718
KAMKTKPLFN	10	Unmodified	_KAMKTKPLFN_					0	0	0			REV__ENSG00000127362|ENST00000247879|TAS2R3	REV__ENSG00000127362|ENST00000247879|TAS2R3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8447265625	2	589.341726	1176.6689	0.52679	0.00031046	1.3794	0.00081296	1.9062	0.0011234	589.3424591519406	91.118	0.71182	91.119	90.973	91.685	0.00046539					64	48	2	0	0	0	0.39227	1	24266	24266		4.897	0.95262	1	363930	+		17618	15338	9884	9885	22481	22481					0.08763210939059718
KANEGVLRRNS	11	Unmodified	_KANEGVLRRNS_					0	0	0			REV__ENSG00000161609|ENST00000447857|KASH5	REV__ENSG00000161609|ENST00000447857|KASH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3471069335938	2	622.346917	1242.67928	0.27701	0.0001724	0.4431	0.00027576	0.72011	0.00044816	622.3470469691697	83.887	1.7177	83.964	83.214	84.931	0.077095					110	67	2	0	0	0	0.46655	1	21857	21857		2.4985	0.65425	1	338500	+		17619	16942	9885	9886	22482	22482					0.06764909917865225
KANYQTLKA	9	Unmodified	_KANYQTLKA_					0	0	0		ENST00000551596.1_1_12:94796783-94806266:-|nuORF;nc|ENSG00000173588|Q9Y592-2|CEP83;ENSG00000173588|ENST00000397809|CEP83	ENST00000551596.1_1_12:94796783-94806266:-|nuORF	ENST00000551596.1_1_12:94796783-94806266:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2786865234375	2	518.792924	1035.57129	0.22264	0.0001155	-0.70932	-0.00036799	-0.48668	-0.00025249	518.7925534121015	26.426	0.42886	26.387	26.235	26.664	-0.038671					23	14	2	0	0	0	0.24289	1	4382	4382		18.146	3.3081	1	111740			17620	6733	9886	9887	22483	22483					0.05493145334571636
KAPDGLTTV	9	Unmodified	_KAPDGLTTV_					0	0	0			REV__ENST00000527124.1_1_10:5754860-5756196:+|nuORF	REV__ENST00000527124.1_1_10:5754860-5756196:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.78472900390625	2	451.2531	900.491647	0.11022	4.9736E-05	-3.22	-0.001453	-3.1098	-0.0014033	451.2527147763508	19.873	0.49773	19.873	19.547	20.045	0					28	17	2	0	0	0	0.25123	1	2366	2366		12.241	4.3305	1	66923	+		17621	21971	9887	9888	22484	22484					0.037420786605594
KAPEHAPRSP	10	Unmodified	_KAPEHAPRSP_					0	0	0		ENST00000375664.8_2_10:28821439-28821706:+|nuORF	ENST00000375664.8_2_10:28821439-28821706:+|nuORF	ENST00000375664.8_2_10:28821439-28821706:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2950439453125	2	545.293622	1088.57269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.4	1	112.38	111.88	112.88	-0.015625								0	0	0	0.38189	1	29236	29236		1.1933	0	1				17622	9912	9888	9889	22485	22485					0.031947794233246896
KAPFGSTRK	9	Unmodified	_KAPFGSTRK_					0	0	0			REV__CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	REV__CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2879638671875	2	496.287808	990.561064	0.07409	3.677E-05	0.11159	5.5382E-05	0.18568	9.2152E-05	496.2878472098935	13.04	0.37172	12.941	12.757	13.129	-0.099291					27	12	3	0	0	0	0.30459	1	307	307		8.1555	0	1	155970	+		17623	13146	9889	9890	22486	22486					0.0654058239999813
KAPKRAIAAW	10	Unmodified	_KAPKRAIAAW_					0	0	0			REV__ENSG00000185728|ENST00000539294|YTHDF3	REV__ENSG00000185728|ENST00000539294|YTHDF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7467651367188	2	556.340375	1110.6662	0.029638	1.6489E-05	-0.22736	-0.00012649	-0.19772	-0.00011	556.340256147063	15.184	0.78121	15.184	14.925	15.706	0					33	26	2	0	0	0	0.31847	1	963	963		3.5965	2.267	1	43451	+		17624	18404	9890	9891	22487	22487					0.1152912359639231
KAPQRLER	8	Unmodified	_KAPQRLER_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B;nc|ENSG00000266714|Q96JP2-2|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.79620361328125	2	499.298707	996.582862	0.0073122	3.651E-06	-0.75494	-0.00037694	-0.74763	-0.00037329	499.29825822818276	13.569	0.44789	13.469	13.16	13.608	-0.099291					26	15	2	0	0	0	0.344	1	495	495		0.69038	0	1	81930			17625	8679	9891	9892	22488	22488					0.08443387148565762
KAPRKQLATK	10	Unmodified	_KAPRKQLATK_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000586518.1_1_17:73775126-73775255:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.864013671875	2	570.864215	1139.71388	-0.1921	-0.00010966	-0.1031	-5.8858E-05	-0.2952	-0.00016852	570.8641343473522	12.092	0.27519	12.024	11.951	12.226	-0.06806					30	12	3	0	0	0	0.36015	1	20	20		10.8	3.1906	1	105100			17626	3640	9892	9893	22489	22489					0.14960777796591174
KAQNQELRNKI	11	Unmodified	_KAQNQELRNKI_					0	0	0		ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.25299072265625	3	447.924759	1340.75245	0.25213	0.00011294	2.6887	0.0012043	2.9408	0.0013173	447.92578395546235	28.84	0.36569	28.84	28.67	29.035	0					17	12	3	0	0	0	0.33238	1	5061	5061		2.9264	1.9128	1	61733			17627	2807	9893	9894	22490	22490					0.09570038640458733
KAQRARTMAL	10	Unmodified	_KAQRARTMAL_					0	0	0		ENSG00000198216|ENST00000367573|CACNA1E;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;CACNA1E|p.S244Vfs*10|1|0.08|ENSG00000198216|chr1:181579185-181579185|A/-|frameshift_variant;ENST00000533229.1_1_1:181452799-181620578:+|nuORF	ENSG00000198216|ENST00000367573|CACNA1E	ENSG00000198216|ENST00000367573|CACNA1E	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.3194580078125	2	573.332224	1144.6499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.5	1	111.5	111	112	0								0	0	0	0.37581	1	28996	28996		3.9444	1.2092	1				17628	8052	9894	9895	22491	22491					0.0833567436800422
KAQRLRVAYE	10	Unmodified	_KAQRLRVAYE_					0	0	0		nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	nc|ENSG00000065057|P78549-3|NTHL1	nc|ENSG00000065057|P78549-3|NTHL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.23602294921875	3	411.906928	1232.69895	-0.38561	-0.00015884	-0.405	-0.00016682	-0.79061	-0.00032566	411.90644878430936	13.035	0.4122	13.035	12.815	13.227	0					24	14	3	0	0	0	0.32165	1	239	239		0.69767	0.07084	1	30612			17629	803	9895	9896	22492	22492					0.09191285928613979
KAQRLRVAYE	10	Unmodified	_KAQRLRVAYE_					0	0	0		nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	nc|ENSG00000065057|P78549-3|NTHL1	nc|ENSG00000065057|P78549-3|NTHL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.906928	1232.69895	-0.13788	-5.6792E-05	-0.50969	-0.00020995	-0.64757	-0.00026674	412.24090946937133	13.126	0.43183	13.027	12.757	13.189	-0.099291	-0.0042557	-3.8893E-05	NaN	0.69767	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31051			17630	803	9895	9896							0.09191285928613979
KARGRLPG	8	Unmodified	_KARGRLPG_					0	0	0		ENST00000367627.7_1_1:179064349-179064412:+|nuORF	ENST00000367627.7_1_1:179064349-179064412:+|nuORF	ENST00000367627.7_1_1:179064349-179064412:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.248291015625	2	427.769586	853.524619	-0.34943	-0.00014947	-0.71113	-0.0003042	-1.0606	-0.00045367	427.76930379394855	12.307	0.17532	12.211	12.148	12.324	-0.096606					8	5	2	0	0	0	0.34319	1	92	92		5.7604	0	1	13831			17631	9745	9896	9897	22493	22493					0.0919975029393072
KARGRLPG	8	Unmodified	_KARGRLPG_					0	0	0		ENST00000367627.7_1_1:179064349-179064412:+|nuORF	ENST00000367627.7_1_1:179064349-179064412:+|nuORF	ENST00000367627.7_1_1:179064349-179064412:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	427.769586	853.524619	-0.42379	-0.00018129	-0.15908	-6.8049E-05	-0.58287	-0.00024933	427.769598178729	12.327	0.15933	12.327	12.273	12.433	0	0.058117	0.00037429	NaN	5.7604	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17530			17632	9745	9896	9897							0.0919975029393072
KARLPLRLFL	10	Unmodified	_KARLPLRLFL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.56072998046875	3	409.608042	1225.8023	0.14581	5.9725E-05	-0.77366	-0.0003169	-0.62785	-0.00025717	409.6076360839689	59.633	0.44977	59.621	59.49	59.94	-0.011486					20	15	2	0	0	0	0.32051	1	14618	14618		1.9064	0.8928	1	157430			17633	1476	9897	9898	22494	22494					0.1984281810707671
KARLPLRLFL	10	Unmodified	_KARLPLRLFL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	409.608042	1225.8023	-0.18063	-7.3987E-05	0.0021778	8.9204E-07	-0.17845	-7.3094E-05	409.60794323476085	59.438	0.92965	59.438	58.968	59.897	0	-0.080527	0.0003641	NaN	1.9064	60	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222030			17634	1476	9897	9898							0.1984281810707671
KARPTEGIN	9	Unmodified	_KARPTEGIN_					0	0	0		ENST00000574382.1_1_17:9460501-9460639:-|nuORF	ENST00000574382.1_1_17:9460501-9460639:-|nuORF	ENST00000574382.1_1_17:9460501-9460639:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2928771972656	2	493.274898	984.535243	0.057287	2.8258E-05	1.1732	0.00057873	1.2305	0.00060699	493.2754990881391	13.805	0.45677	13.805	13.567	14.024	0					34	15	3	0	0	0	0.25706	1	507	507		3.5965	0.31518	1	67300			17635	12039	9898	9899	22495	22495					0.042356881577120475
KARTLIRE	8	Unmodified	_KARTLIRE_					0	0	0			REV__nc|ENSG00000198556|Q5FWF6-2|ZNF789	REV__nc|ENSG00000198556|Q5FWF6-2|ZNF789	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2928771972656	2	493.808908	985.603263	0.063006	3.1113E-05	-1.0378	-0.00051248	-0.97481	-0.00048137	493.80851930434426	13.7	0.31009	13.7	13.537	13.847	0					14	10	2	0	0	0	0.34272	1	507	507		4.3292	0	1	50620	+		17636	18832	9899	9900	22496	22496					0.10988557808377664
KARTVLVVT	9	Unmodified	_KARTVLVVT_					0	0	0			REV__ENST00000523364.1_1_7:27160577-27160676:+|nuORF	REV__ENST00000523364.1_1_7:27160577-27160676:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.29290771484375	2	493.821484	985.628415	0.069569	3.4355E-05	-0.7605	-0.00037555	-0.69093	-0.0003412	493.8210514544392	14.03	0.2907	14.03	13.847	14.138	0					13	9	2	0	0	0	0.26188	1	555	555		1.6526	0.96225	1	53003	+		17637	21929	9900	9901	22497	22497					0.13502612610921005
KARTVLVVT	9	Unmodified	_KARTVLVVT_					0	0	0			REV__ENST00000523364.1_1_7:27160577-27160676:+|nuORF	REV__ENST00000523364.1_1_7:27160577-27160676:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.821484	985.628415	0.00187	9.2343E-07	-0.081483	-4.0238E-05	-0.079613	-3.9315E-05	493.8214429539839	14.039	0.2669	13.973	13.831	14.098	-0.066068	-0.0069777	0.00022749	NaN	1.6526	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31557	+		17638	21929	9900	9901							0.13502612610921005
KARVEELDRK	10	Unmodified	_KARVEELDRK_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.5198974609375	3	415.242088	1242.70443	0.088878	3.6906E-05	-1.6682	-0.00069271	-1.5793	-0.0006558	415.5750558470304	29.186	0.21465	29.199	29.033	29.248	0.013475					10	7	2	0	0	0	0.31911	1	5182	5182		3.8763	0	1	48734			17639	2162	9901	9902	22498	22498					0.09278964720397198
KARVTPTLP	9	Unmodified	_KARVTPTLP_					0	0	0		nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8	nc|ENSG00000172943|Q9UPP1-5|PHF8	nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.8056640625	2	491.805834	981.597115	0.20151	9.9102E-05	-0.0979	-4.8148E-05	0.10361	5.0954E-05	491.8056921848753	23.364	0.71846	23.277	22.967	23.685	-0.087608					62	25	3	0	0	0	0.2719	1	3503	3503		13.042	2.9685	1	472610			17640	6679	9902	9903	22499	22499					0.10558039576847023
KASSFSGISI	10	Unmodified	_KASSFSGISI_					0	0	0		ENST00000548184.1_1_12:57644959-57689258:-|nuORF;nc|ENSG00000179912|Q9Y2K5-3|R3HDM2;nc|ENSG00000179912|Q9Y2K5-2|R3HDM2;nc|ENSG00000179912|Q9Y2K5|R3HDM2;ENSG00000179912|ENST00000402412|R3HDM2	ENST00000548184.1_1_12:57644959-57689258:-|nuORF	ENST00000548184.1_1_12:57644959-57689258:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.77215576171875	2	498.771657	995.528761	0.33218	0.00016568	0.31036	0.0001548	0.64254	0.00032048	498.7716412430467	16.624	0.61689	16.562	16.298	16.915	-0.062532					44	21	3	0	0	0	0.35637	1	1418	1418		11.495	0	1	190140			17641	7152	9903	9904	22500	22500					0.030817502063428037
KASSSLPKK	9	Unmodified	_KASSSLPKK_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53;ENST00000588858.5_1_19:13886394-13889009:+|nuORF	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.2897644042969	2	473.290017	944.565481	-0.24546	-0.00011618	-0.00040069	-1.8964E-07	-0.24587	-0.00011637	473.28999804619076	12.206	0.42141	12.206	12.011	12.433	0					42	17	3	0	0	0	0.048637	1	53	53		53.404	16.898	1	390770			17642	1943	9904	9905	22501	22501					0.09098046822896322
KASSSLPKK	9	Unmodified	_KASSSLPKK_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53;ENST00000588858.5_1_19:13886394-13889009:+|nuORF	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.2898254394531	2	473.290017	944.565481	-0.058277	-2.7582E-05	-0.12295	-5.8189E-05	-0.18122	-8.5771E-05	473.28989098604427	12.204	0.39004	12.108	11.905	12.295	-0.096607					47	16	4	0	0	0	0.22935	1	47	47		19.362	7.1213	1	390880			17643	1943	9904	9905	22502	22502					0.09098046822896322
KASSSLPKK	9	Unmodified	_KASSSLPKK_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53;ENST00000588858.5_1_19:13886394-13889009:+|nuORF	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.28985595703125	2	473.290017	944.565481	-0.20846	-9.8661E-05	-0.00067745	-3.2063E-07	-0.20914	-9.8982E-05	473.28996839943335	12.22	0.46182	12.152	11.943	12.405	-0.06806					49	19	3	0	0	0	0.058995	1	55	55		49.554	20.473	1	378640			17644	1943	9904	9905	22503	22503					0.09098046822896322
KASVRNTPLT	10	Unmodified	_KASVRNTPLT_					0	0	0		nc|ENSG00000087589|Q9NQ75-2|CASS4;ENST00000497244.1_1_20:54987478-55028248:+|nuORF;ENSG00000087589|ENST00000679887|CASS4	nc|ENSG00000087589|Q9NQ75-2|CASS4	nc|ENSG00000087589|Q9NQ75-2|CASS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2802734375	2	543.81693	1085.61931	0.37913	0.00020618	-0.39155	-0.00021293	-0.012422	-6.7551E-06	543.8166519646308	18.37	0.35075	18.252	18.089	18.44	-0.11739					17	11	2	0	0	0	0.32139	1	1956	1956		1.3295	0	1	39001			17645	1311	9905	9906	22504	22504					0.07992219254606425
KATAVRHSKK	10	Unmodified	_KATAVRHSKK_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10;nc|ENSG00000152580|Q6WRI0-3|IGSF10;nc|ENSG00000152580|Q6WRI0-2|IGSF10;ENST00000495443.1_1_3:151154479-151158406:-|nuORF	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.6444702148438	2	563.346189	1124.67783	0.10544	5.9398E-05	0.41504	0.00023381	0.52047	0.00029321	563.3463375904978	14.774	0.25735	14.669	14.565	14.822	-0.10527					14	8	3	0	0	0	0.31958	1	812	812		5.2969	1.3525	1	53769			17646	5026	9906	9907	22505	22505					0.12047320619740276
KATEHATEL	9	Unmodified	_KATEHATEL_					0	0	0		nc|ENSG00000188820|Q5R3K3-2|CALHM6;ENSG00000188820|ENST00000368605|CALHM6	nc|ENSG00000188820|Q5R3K3-2|CALHM6	nc|ENSG00000188820|Q5R3K3-2|CALHM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2591552734375	2	500.258914	998.503274	0.069573	3.4805E-05	1.0274	0.00051396	1.097	0.00054876	500.2594304113275	14.979	0.52991	14.979	14.819	15.348	0					37	18	3	0	0	0	0.0028626	1	889	889		103.35	47.176	1	214190			17647	7778	9907	9908	22506	22506					0.003962756838859605
KATEHATEL	9	Unmodified	_KATEHATEL_					0	0	0		nc|ENSG00000188820|Q5R3K3-2|CALHM6;ENSG00000188820|ENST00000368605|CALHM6	nc|ENSG00000188820|Q5R3K3-2|CALHM6	nc|ENSG00000188820|Q5R3K3-2|CALHM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2590637207031	2	500.258914	998.503274	0.13437	6.722E-05	0.95758	0.00047904	1.0919	0.00054626	500.2594004984007	15.054	0.49414	14.944	14.818	15.312	-0.10981					36	17	3	0	0	0	0.016723	1	915	915		69.105	34.703	1	266250			17648	7778	9907	9908	22507	22507					0.003962756838859605
KATEHATEL	9	Unmodified	_KATEHATEL_					0	0	0		nc|ENSG00000188820|Q5R3K3-2|CALHM6;ENSG00000188820|ENST00000368605|CALHM6	nc|ENSG00000188820|Q5R3K3-2|CALHM6	nc|ENSG00000188820|Q5R3K3-2|CALHM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.25933837890625	2	500.258914	998.503274	0.0444	2.2211E-05	0.8305	0.00041546	0.8749	0.00043767	500.25937333098346	15.102	0.48856	15.038	14.871	15.36	-0.064413					29	16	3	0	0	0	0.0079761	1	934	934		82.529	42.58	1	261870			17649	7778	9907	9908	22508	22508					0.003962756838859605
KATPSGLRR	9	Unmodified	_KATPSGLRR_					0	0	0			REV__ENST00000361781.6_1_10:52067826-52087058:-|nuORF	REV__ENST00000361781.6_1_10:52067826-52087058:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.2983703613281	2	493.298707	984.582862	0.11358	5.6031E-05	-0.58473	-0.00028845	-0.47115	-0.00023242	493.298409359191	12.165	0.3443	12.068	11.979	12.324	-0.096607					29	13	3	0	0	0	0.23767	1	41	41		18.146	5.6148	1	136370	+		17650	20288	9908	9909	22509	22509					0.08995387148559075
KATPSGLRR	9	Unmodified	_KATPSGLRR_					0	0	0			REV__ENST00000361781.6_1_10:52067826-52087058:-|nuORF	REV__ENST00000361781.6_1_10:52067826-52087058:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.29876708984375	2	493.298707	984.582862	-0.091454	-4.5114E-05	-0.25713	-0.00012684	-0.34858	-0.00017195	493.29854172095236	12.16	0.23855	12.091	12.014	12.253	-0.06806					29	10	4	0	0	0	0.2719	1	40	40		13.042	2.2185	1	108910	+		17651	20288	9908	9909	22510	22510					0.08995387148559075
KAVARTAR	8	Unmodified	_KAVARTAR_					0	0	0		ENSG00000168264|ENST00000366609|IRF2BP2;IRF2BP2|p.P370Hfs*26|1|0.06|ENSG00000168264|chr1:234607792-234607793|-/TAGCAGACAAT|frameshift_variant	ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.77471923828125	2	436.774868	871.535184	-0.036576	-1.5975E-05	-0.28173	-0.00012305	-0.3183	-0.00013903	436.774743969399	80.522	2.0707	80.522	79.981	82.052	0					269	87	6	0	0	0	0.46022	1	21151	21151		2.3027	0	1	18336000			17652	6260	9909	9910	22511	22511					0.0942773294835888
KAVCRLSVKF	10	Unmodified	_KAVCRLSVKF_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8431396484375	2	575.841894	1149.66923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.15	1	113.16	112.66	113.66	0.014824								0	0	0	0.38126	1	29441	29441		1.6526	0	1				17653	2673	9910	9911	22512	22512					0.10038630658914371
KAVCRLSVKF	10	Unmodified	_KAVCRLSVKF_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8427124023438	2	575.841894	1149.66923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.04	1	114.05	113.55	114.55	0.016708								0	0	0	0.38126	1	29663	29663		1.6526	0	1				17654	2673	9910	9911	22513	22513					0.10038630658914371
KAVERLHKS	9	Unmodified	_KAVERLHKS_					0	0	0		nc|nan|Q9NQ32-2|C11orf16;ENSG00000176029|ENST00000326053|C11orf16	nc|nan|Q9NQ32-2|C11orf16	nc|nan|Q9NQ32-2|C11orf16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7464599609375	2	534.31964	1066.62473	0.37569	0.00020074	0.79562	0.00042511	1.1713	0.00062586	534.3200751043796	25.975	0.52433	25.953	25.774	26.298	-0.022236					27	18	2	0	0	0	0.26031	1	4209	4209		3.5965	0	1	116930			17655	6898	9911	9912	22514	22514					0.09407942837083283
KAVERLHKS	9	Unmodified	_KAVERLHKS_					0	0	0		nc|nan|Q9NQ32-2|C11orf16;ENSG00000176029|ENST00000326053|C11orf16	nc|nan|Q9NQ32-2|C11orf16	nc|nan|Q9NQ32-2|C11orf16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	534.31964	1066.62473	0.32514	0.00017373	0.74969	0.00040057	1.0748	0.0005743	534.3198699257849	25.985	0.44832	25.985	25.823	26.271	0	0.027937	0.00011658	NaN	3.5965	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139350			17656	6898	9911	9912							0.09407942837083283
KAVERLHKS	9	Unmodified	_KAVERLHKS_					0	0	0		nc|nan|Q9NQ32-2|C11orf16;ENSG00000176029|ENST00000326053|C11orf16	nc|nan|Q9NQ32-2|C11orf16	nc|nan|Q9NQ32-2|C11orf16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	534.31964	1066.62473	0.12894	6.8897E-05	0.4877	0.00026059	0.61665	0.00032949	534.3200079583572	25.971	0.39204	25.933	25.843	26.235	-0.038671	-0.024145	-0.00016339	NaN	3.5965	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192280			17657	6898	9911	9912							0.09407942837083283
KAVFPLLYV	9	Unmodified	_KAVFPLLYV_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3115234375	2	525.323328	1048.6321	0.42066	0.00022098	-0.18457	-9.696E-05	0.23609	0.00012402	525.3231427601687	74.215	0.2831	74.267	74.146	74.429	0.052361					14	9	2	0	0	0	0.21303	1	18991	18991		21.747	12.399	1	237920			17658	415	9912	9913	22515	22515					0.10973282384793492
KAVGLELLSV	10	Unmodified	_KAVGLELLSV_					0	0	0			REV__ENSG00000185313|ENST00000449082|SCN10A	REV__ENSG00000185313|ENST00000449082|SCN10A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.266357421875	2	514.82115	1027.62775	0.039182	2.0172E-05	-0.0017084	-8.7952E-07	0.037474	1.9292E-05	514.8215480543163	59.541	0.51986	59.636	59.412	59.932	0.095093					31	18	2	0	0	0	0.30079	1	14581	14581		6.2058	0	1	613290	+		17659	18372	9913	9914	22516	22516					0.1150377317121638
KAVLHINQL	9	Unmodified	_KAVLHINQL_					0	0	0			REV__ENSG00000007174|ENST00000262442|DNAH9	REV__ENSG00000007174|ENST00000262442|DNAH9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3170776367188	2	518.319109	1034.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.85	1	74.819	74.319	75.319	-0.031487								0	0	0	0.22065	1	19187	19187		15.847	4.2069	1		+		17660	13381	9914	9915	22517	22517					0.10773728468188892
KAWEWRYRLYR	11	Unmodified	_KAWEWRYRLYR_					0	0	0		ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant;nc|ENSG00000153930|Q8N957-2|ANKFN1;ENSG00000153930|ENST00000682825|ANKFN1	ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant	ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2666625976562	3	542.959915	1625.85791	0.63524	0.00034491	-0.2434	-0.00013215	0.39184	0.00021275	543.2941008032533	62.452	0.38158	62.549	62.307	62.689	0.096985					17	13	2	0	0	0	0.33352	1	15406	15406		0	0	1	376710			17661	43	9915	9916	22518	22518					0.07001999556723604
KAYELALYL	9	Unmodified	_KAYELALYL_					0	0	0		ENST00000497060.1_1_3:149683956-149686189:-|nuORF;ENST00000239940.11_1_3:149683956-149684166:-|nuORF;nc|ENSG00000070087|P35080-2|PFN2	ENST00000497060.1_1_3:149683956-149686189:-|nuORF	ENST00000497060.1_1_3:149683956-149686189:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2359008789062	2	542.307875	1082.6012	0.59176	0.00032092	-0.20462	-0.00011097	0.38715	0.00020995	542.307445727235	66.512	0.80954	66.512	66.266	67.076	0					59	28	3	0	0	0	0.17696	1	16667	16667		36.506	17.249	1	1477200			17662	8883	9916	9917	22519	22519					0.06320084279900584
KAYELALYL	9	Unmodified	_KAYELALYL_					0	0	0		ENST00000497060.1_1_3:149683956-149686189:-|nuORF;ENST00000239940.11_1_3:149683956-149684166:-|nuORF;nc|ENSG00000070087|P35080-2|PFN2	ENST00000497060.1_1_3:149683956-149686189:-|nuORF	ENST00000497060.1_1_3:149683956-149686189:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2360229492188	2	542.307875	1082.6012	0.51617	0.00027992	0.0056767	3.0785E-06	0.52184	0.000283	542.3075535277164	66.508	0.67471	66.495	66.278	66.953	-0.013588					58	24	3	0	0	0	0.17696	1	16626	16626		36.506	11.107	1	1254400			17663	8883	9916	9917	22520	22520					0.06320084279900584
KAYHEQLSV	9	Unmodified	_KAYHEQLSV_					0	0	0		ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000442868.1_1_1:202822165-202825009:-|nuORF;ENSG00000183785|ENST00000330423|TUBA8;ENST00000422086.5_2_22:21362941-21363382:-|nuORF;ENST00000442739.1_1_22:21357241-21363382:-|nuORF	ENSG00000152086|ENST00000312988|TUBA3E;ENST00000422086.5_2_22:21362941-21363382:-|nuORF	ENSG00000152086|ENST00000312988|TUBA3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7822265625	2	537.782556	1073.55056	0.33835	0.00018196	-0.42343	-0.00022771	-0.085081	-4.5755E-05	537.7822330720268	25.673	0.55635	25.673	25.267	25.823	0					37	18	3	0	0	0	0.10335	1	4126	4126		37.771	21.622	1	280370			17664	4999;10377	9917	9918	22521	22521					0.01672554954870975
KAYHEQLSV	9	Unmodified	_KAYHEQLSV_					0	0	0		ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000442868.1_1_1:202822165-202825009:-|nuORF;ENSG00000183785|ENST00000330423|TUBA8;ENST00000422086.5_2_22:21362941-21363382:-|nuORF;ENST00000442739.1_1_22:21357241-21363382:-|nuORF	ENSG00000152086|ENST00000312988|TUBA3E;ENST00000422086.5_2_22:21362941-21363382:-|nuORF	ENSG00000152086|ENST00000312988|TUBA3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7825927734375	2	537.782556	1073.55056	0.11409	6.1357E-05	0.099687	5.361E-05	0.21378	0.00011497	537.7824152512678	25.677	0.72727	25.63	25.195	25.922	-0.04706					44	24	4	0	0	0	0.043711	1	4124	4124		55.235	22.449	1	328920			17665	4999;10377	9917	9918	22522	22522					0.01672554954870975
KAYHEQLSV	9	Unmodified	_KAYHEQLSV_					0	0	0		ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000442868.1_1_1:202822165-202825009:-|nuORF;ENSG00000183785|ENST00000330423|TUBA8;ENST00000422086.5_2_22:21362941-21363382:-|nuORF;ENST00000442739.1_1_22:21357241-21363382:-|nuORF	ENSG00000152086|ENST00000312988|TUBA3E;ENST00000422086.5_2_22:21362941-21363382:-|nuORF	ENSG00000152086|ENST00000312988|TUBA3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.782470703125	2	537.782556	1073.55056	0.2621	0.00014096	0.002531	1.3611E-06	0.26464	0.00014232	537.7823689376254	25.73	0.58195	25.708	25.388	25.97	-0.022238					37	19	3	0	0	0	0.068498	2	4133	4133;4170		46.022	28.909	1	300850			17666	4999;10377	9917	9918	22523;22524	22523					0.01672554954870975
KAYHEQLTV	9	Unmodified	_KAYHEQLTV_					0	0	0		ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7904663085938	2	544.790381	1087.56621	0.33503	0.00018252	-0.24477	-0.00013335	0.090261	4.9173E-05	544.7903376698277	26.31	0.51605	26.31	26.042	26.558	0					39	17	3	0	0	0	0.11813	1	4334	4334		35.612	16.25	1	266290			17667	6187	9918	9919	22525	22525					0.02592841471914653
KAYHEQLTV	9	Unmodified	_KAYHEQLTV_					0	0	0		ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7904663085938	2	544.790381	1087.56621	0.45783	0.00024942	-0.036007	-1.9616E-05	0.42183	0.00022981	544.790401466809	26.297	0.41998	26.258	26.069	26.489	-0.03867					34	14	3	0	0	0	0.015027	1	4323	4323		71.708	31.758	1	376580			17668	6187	9918	9919	22526	22526					0.02592841471914653
KAYHEQLTV	9	Unmodified	_KAYHEQLTV_					0	0	0		ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	544.790381	1087.56621	0.68273	0.00037195	-0.12979	-7.0709E-05	0.55294	0.00030124	544.7904523678486	26.411	0.47968	26.389	26.105	26.584	-0.022236	0.070211	2.3588E-05	NaN	71.708	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274060			17669	6187	9918	9919							0.02592841471914653
KCDYLKKGHQ	10	Unmodified	_KCDYLKKGHQ_					0	0	0			REV__nc|ENSG00000197044|Q8N8Z8-2|ZNF441	REV__nc|ENSG00000197044|Q8N8Z8-2|ZNF441	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.8787536621094	3	407.213252	1218.61793	-0.38824	-0.0001581	0.99031	0.00040327	0.60206	0.00024517	407.21366413896055	14.021	0.64334	13.916	13.435	14.079	-0.10466					64	22	4	0	0	0	0.31701	1	581	581		7.4771	0	1	292280	+		17670	18704	9919	9920	22527	22527					0.017362618941888286
KCFIMTRSLIV	11	Unmodified	_KCFIMTRSLIV_					0	0	0		ENST00000379540.7_1_9:33370017-33370257:+|nuORF	ENST00000379540.7_1_9:33370017-33370257:+|nuORF	ENST00000379540.7_1_9:33370017-33370257:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.5931396484375	3	437.582288	1309.72503	-0.045082	-1.9727E-05	0.4791	0.00020965	0.43402	0.00018992	437.58250480311625	21.984	0.67558	21.984	21.627	22.303	0					41	24	2	0	0	0	0.45202	1	3090	3090		4.4062	1.0865	1	300710			17671	9968	9920	9921	22528	22528					0.08256095784213358
KCGLREILLPP	11	Unmodified	_KCGLREILLPP_					0	0	0			REV__nc|ENSG00000112494|Q86WB7-2|UNC93A	REV__nc|ENSG00000112494|Q86WB7-2|UNC93A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8676147460938	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.775	1	90.866	90.366	91.366	0.090668								0	0	0	0.37501	1	24065	24065		2.7352	0	1		+		17672	14778	9921	9922	22529	22529					0.11231169001871422
KCIFSEPLL	9	Unmodified	_KCIFSEPLL_					0	0	0			REV__nc|ENSG00000100225|Q9Y3I1-3|FBXO7	REV__nc|ENSG00000100225|Q9Y3I1-3|FBXO7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.304931640625	2	525.288628	1048.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.415	1	86.406	85.906	86.906	-0.0090027								0	0	0	0.24311	1	22726	22726		8.5933	0	1		+		17673	14170	9922	9923	22530	22530					0.04036455373739045
KCKYFYYL	8	Unmodified	_KCKYFYYL_					0	0	0		ENST00000589761.1_1_17:58378837-58469252:-|nuORF	ENST00000589761.1_1_17:58378837-58469252:-|nuORF	ENST00000589761.1_1_17:58378837-58469252:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.283447265625	2	564.283346	1126.55214	0.12492	7.049E-05	-1.8161	-0.0010248	-1.6911	-0.00095428	564.2843460292759	18.407	0.34502	18.407	18.243	18.588	0					24	11	3	0	0	0	0.46491	1	1937	1937		0.69038	0.088878	1	53596			17674	12164	9923	9924	22531	22531					-0.0060752728070383455
KCKYFYYL	8	Unmodified	_KCKYFYYL_					0	0	0		ENST00000589761.1_1_17:58378837-58469252:-|nuORF	ENST00000589761.1_1_17:58378837-58469252:-|nuORF	ENST00000589761.1_1_17:58378837-58469252:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.283346	1126.55214	0.18483	0.0001043	-0.17069	-9.6315E-05	0.014144	7.9811E-06	564.2843675915396	18.533	0.42998	18.416	18.184	18.614	-0.11739	-0.014541	0.00040535	NaN	0.69038	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46048			17675	12164	9923	9924							-0.0060752728070383455
KCKYFYYL	8	Unmodified	_KCKYFYYL_					0	0	0		ENST00000589761.1_1_17:58378837-58469252:-|nuORF	ENST00000589761.1_1_17:58378837-58469252:-|nuORF	ENST00000589761.1_1_17:58378837-58469252:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	564.283346	1126.55214	-0.087823	-4.9557E-05	0.14942	8.4314E-05	0.061594	3.4757E-05	564.2844355541692	18.526	0.39591	18.468	18.285	18.681	-0.058174	0.037564	0.00076661	NaN	0.69038	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54760			17676	12164	9923	9924							-0.0060752728070383455
KCLAFLLLLVR	11	Unmodified	_KCLAFLLLLVR_					0	0	0			REV__ENST00000505322.5_1_1:2100378-2116445:+|nuORF	REV__ENST00000505322.5_1_1:2100378-2116445:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.26434326171875	3	430.277305	1287.81008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.885	1	66.969	66.469	67.469	0.083832								0	0	0	0.38124	1	16757	16757		1.2148	0.70888	1		+		17677	21739	9924	9925	22532	22532					0.1776920931231416
KCLFVRPR	8	Unmodified	_KCLFVRPR_					0	0	0		ENSG00000162949|ENST00000295055|CAPN13;nc|ENSG00000162949|Q6MZZ7-2|CAPN13	ENSG00000162949|ENST00000295055|CAPN13	ENSG00000162949|ENST00000295055|CAPN13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8038024902344	2	509.802571	1017.59059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.78	1	116.78	116.28	117.28	0								0	0	0	0.37664	1	30219	30219		2.5775	1.7838	1				17678	5633	9925	9926	22533	22533					0.08249823144478796
KCRGARTEKR	10	Unmodified	_KCRGARTEKR_					0	0	0		nc|ENSG00000142621|B1AJZ9-3|FHAD1	nc|ENSG00000142621|B1AJZ9-3|FHAD1	nc|ENSG00000142621|B1AJZ9-3|FHAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8373413085938	2	602.838205	1203.66186	-0.013647	-8.2269E-06	-1.9535	-0.0011777	-1.9672	-0.0011859	602.836979860847	25.429	0.47312	25.397	25.126	25.599	-0.031408					28	16	2	0	0	0	0.38284	1	4054	4054		6.6304	1.2277	1	105290			17679	12732	9926	9927	22534	22534					0.06817291111201484
KCRGARTEKR	10	Unmodified	_KCRGARTEKR_					0	0	0		nc|ENSG00000142621|B1AJZ9-3|FHAD1	nc|ENSG00000142621|B1AJZ9-3|FHAD1	nc|ENSG00000142621|B1AJZ9-3|FHAD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	602.838205	1203.66186	0.38336	0.0002311	-3.4451	-0.0020768	-3.0617	-0.0018457	602.835946592253	25.334	0.44175	25.334	25.091	25.533	0	-0.024176	-0.00075758	NaN	6.6304	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83437			17680	12732	9926	9927							0.06817291111201484
KCRGARTEKR	10	Unmodified	_KCRGARTEKR_					0	0	0		nc|ENSG00000142621|B1AJZ9-3|FHAD1	nc|ENSG00000142621|B1AJZ9-3|FHAD1	nc|ENSG00000142621|B1AJZ9-3|FHAD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	602.838205	1203.66186	0.25782	0.00015542	-2.4899	-0.001501	-2.2321	-0.0013456	602.8363160761563	25.4	0.38008	25.344	25.134	25.514	-0.055931	-0.014562	0.00039407	NaN	6.6304	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113120			17681	12732	9926	9927							0.06817291111201484
KCTPRLLITHE	11	Unmodified	_KCTPRLLITHE_					0	0	0			REV__nc|ENSG00000111142|P50579-3|METAP2	REV__nc|ENSG00000111142|P50579-3|METAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.26776123046875	3	437.579823	1309.71764	0.029972	1.3115E-05	0.17763	7.7729E-05	0.20761	9.0845E-05	437.914339882232	46.312	0.67097	46.377	45.753	46.424	0.065048					31	23	2	0	0	0	0.33085	1	10342	10342		8.2864	2.0521	1	277260	+		17682	14704	9927	9928	22535	22535					0.07517079508170355
KCVFVAVIL	9	Unmodified	_KCVFVAVIL_					0	0	0			REV__ENST00000523504.5_1_8:22880186-22926453:-|nuORF	REV__ENST00000523504.5_1_8:22880186-22926453:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3040466308594	2	496.304081	990.59361	0.356	0.00017669	-0.097131	-4.8207E-05	0.25887	0.00012848	496.303888308668	73.998	3.3109	74.051	73.17	76.481	0.052361					303	118	4	0	0	0	0.33018	1	19196	19196		4.3292	4.3292	1	3943000	+		17683	15098	9928	9929	22536	22536					0.09793653478641318
KCVSVFFHP	9	Unmodified	_KCVSVFFHP_					0	0	0		ENSG00000181378|ENST00000341552|CFAP65;nc|ENSG00000181378|Q6ZU64-4|CFAP65;nc|ENSG00000181378|Q6ZU64-5|CFAP65;ENST00000463683.1_1_2:219894468-219900288:-|nuORF	ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.9220581054688	2	532.273312	1062.53207	-0.0023522	-1.252E-06	-2.2656	-0.0012059	-2.2679	-0.0012072	532.2719201682258	13.993	0.14348	13.888	13.79	13.933	-0.10466					6	4	2	0	0	0	0.26068	1	589	589		3.2813	0.28607	1	18304			17684	7231	9929	9930	22537	22537					0.0033072177936901426
KCWIKNNIQFL	11	Unmodified	_KCWIKNNIQFL_					0	0	0			REV__CON__P00711	REV__CON__P00711	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.277099609375	3	469.591952	1405.75403	0.14341	6.7344E-05	0.18929	8.8887E-05	0.33269	0.00015623	469.5920055498439	52.098	0.48579	52.149	51.955	52.441	0.050575					36	17	3	0	0	0	0.33236	1	12150	12150		4.4062	0	1	395000	+	+	17685	13249	9930	9931	22538	22538					0.06737956404845136
KCYKRLQL	8	Unmodified	_KCYKRLQL_					0	0	0			REV__ENSG00000197360|ENST00000357774|ZNF98	REV__ENSG00000197360|ENST00000357774|ZNF98	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7584228515625	2	526.307687	1050.60082	0.25976	0.00013672	0.31513	0.00016586	0.5749	0.00030257	526.8088509637605	39.169	0.47015	39.262	39.078	39.548	0.092674					37	16	3	0	0	0	0.3366	1	8245	8245		18.135	0	1	364130	+		17686	18730	9931	9932	22539	22539					0.07754386079068354
KDADLFKVL	9	Unmodified	_KDADLFKVL_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-6|MON2	REV__nc|ENSG00000061987|Q7Z3U7-6|MON2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8245849609375	2	524.8055	1047.59645	0.5282	0.0002772	-0.49764	-0.00026116	0.03056	1.6038E-05	524.8051095270547	38.289	0.60955	38.38	38.011	38.62	0.090881					56	21	3	0	0	0	0.29638	1	7927	7927		9.3831	0	1	1098700	+		17687	22890	9932	9933	22540	22540					0.07455200137110296
KDARKGPLVP	10	Unmodified	_KDARKGPLVP_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8314208984375	2	540.82984	1079.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.173	1	84.173	83.673	84.673	0								0	0	0	0.3629	1	22053	22053		9.3831	1.7742	1				17688	7421	9933	9934	22541	22541					0.10849113496919927
KDARKGPLVP	10	Unmodified	_KDARKGPLVP_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.83154296875	2	540.82984	1079.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.306	1	91.306	90.806	91.806	0.00046539								0	0	0	0.37157	1	24230	24230		5.7319	0	1				17689	7421	9933	9934	22542	22542					0.10849113496919927
KDDKQESILK	10	Unmodified	_KDDKQESILK_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.332763671875	2	602.33261	1202.65067	0.14386	8.6649E-05	0.44016	0.00026513	0.58402	0.00035177	602.3326515713763	39.569	0.64808	39.569	39.294	39.942	0					46	23	3	0	0	0	0.13784	2	8331	8331;8384		40.239	13.016	1	607830	+		17690	14895	9934	9935	22543;22544	22543					0.057447474980335755
KDDKQESILK	10	Unmodified	_KDDKQESILK_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.3324584960938	2	602.33261	1202.65067	0.39002	0.00023492	0.1513	9.1132E-05	0.54132	0.00032605	602.3324884572938	39.408	0.49912	39.501	39.278	39.777	0.09267					38	17	3	0	0	0	0.13784	1	8311	8311		40.239	6.7943	1	661950	+		17691	14895	9934	9935	22545	22545					0.057447474980335755
KDDKQESILK	10	Unmodified	_KDDKQESILK_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3323974609375	2	602.33261	1202.65067	0.39007	0.00023495	-0.098316	-5.9219E-05	0.29176	0.00017573	602.3324434302758	39.38	0.60785	39.48	39.236	39.844	0.099407					35	21	2	0	0	0	0.13784	1	8275	8275		40.239	13.016	1	712060	+		17692	14895	9934	9935	22546	22546					0.057447474980335755
KDDKQESILK	10	Unmodified	_KDDKQESILK_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	602.33261	1202.65067	0.14386	8.6649E-05	0.44016	0.00026513	0.58402	0.00035177	602.3326515713763	39.569	0.64808	39.569	39.294	39.942	0	0.052222	0.0003339	NaN	40.239	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	607830	+		17693	14895	9934	9935							0.057447474980335755
KDDKQESILK	10	Unmodified	_KDDKQESILK_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	602.33261	1202.65067	0.39002	0.00023492	0.1513	9.1132E-05	0.54132	0.00032605	602.3324884572938	39.408	0.49912	39.501	39.278	39.777	0.09267	-0.01544	-1.4083E-05	NaN	40.239	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	661950	+		17694	14895	9934	9935							0.057447474980335755
KDDKQESILK	10	Unmodified	_KDDKQESILK_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	602.33261	1202.65067	0.39007	0.00023495	-0.098316	-5.9219E-05	0.29176	0.00017573	602.3324434302758	39.38	0.60785	39.48	39.236	39.844	0.099407	-0.036781	-0.00031478	NaN	40.239	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	712060	+		17695	14895	9934	9935							0.057447474980335755
KDEKEKPK	8	Unmodified	_KDEKEKPK_					0	0	0			REV__nc|ENSG00000186439|Q13061-2|TRDN	REV__nc|ENSG00000186439|Q13061-2|TRDN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7608642578125	2	501.284931	1000.55531	0.005188	2.6007E-06	-1.3746	-0.00068907	-1.3694	-0.00068647	501.2841817555447	12.673	0.1695	12.673	12.582	12.751	0					8	5	2	0	0	0	0.34353	1	219	219		4.756	0.81161	1	16034	+		17696	18447	9935	9936	22547	22547					0.05505439097657927
KDEKEKPK	8	Unmodified	_KDEKEKPK_					0	0	0			REV__nc|ENSG00000186439|Q13061-2|TRDN	REV__nc|ENSG00000186439|Q13061-2|TRDN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	501.284931	1000.55531	0.043527	2.1819E-05	-1.4147	-0.00070917	-1.3712	-0.00068735	501.2842062744475	12.692	0.1827	12.593	12.49	12.673	-0.099291	-0.040139	-1.7357E-05	NaN	4.756	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20487	+		17697	18447	9935	9936							0.05505439097657927
KDELAEMLCSM	11	Unmodified	_KDELAEMLCSM_					0	0	0			REV__ENSG00000090863|ENST00000422840|GLG1	REV__ENSG00000090863|ENST00000422840|GLG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2062072753906	3	423.855637	1268.54508	-1.611	-0.00068281	-1.32	-0.0005595	-2.931	-0.0012423	423.8548328715533	34.83	0.30882	34.83	34.725	35.033	0					21	10	3	0	0	0	0.33303	1	6952	6952		2.4348	1.808	1	130510	+		17698	14051	9936	9937	22548	22548					-0.0784499600572417
KDERRCKL	8	Unmodified	_KDERRCKL_					0	0	0			REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2987670898438	2	524.290025	1046.5655	0.049744	2.608E-05	-1.3455	-0.00070545	-1.2958	-0.00067937	524.2892924834225	12.726	0.29982	12.659	12.434	12.734	-0.067496					12	9	2	0	0	0	0.43302	1	196	196		11.64	4.3511	1	45103	+		17699	22891	9937	9938	22549	22549					0.04407723551230447
KDESKMKAKI	10	Unmodified	_KDESKMKAKI_					0	0	0			REV__EPHA6|p.E681D|1|0.17|ENSG00000080224|chr3:97479333-97479333|G/C|missense_variant	REV__EPHA6|p.E681D|1|0.17|ENSG00000080224|chr3:97479333-97479333|G/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3340454101562	2	589.334098	1176.65364	0.37244	0.00021949	0.96142	0.0005666	1.3339	0.00078609	589.3340052548045	56.88	0.53032	56.959	56.756	57.287	0.078674					54	19	4	0	0	0	0.34053	1	13754	13754		14.405	0.49933	1	983330	+		17700	22679	9938	9939	22550	22550					0.07238299351206479
KDFVPELLPSL	11	Unmodified	_KDFVPELLPSL_					0	0	0		ENST00000460481.1_1_2:172779577-172779664:+|nuORF	ENST00000460481.1_1_2:172779577-172779664:+|nuORF	ENST00000460481.1_1_2:172779577-172779664:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2528381347656	3	419.907823	1256.70164	0.12348	5.1851E-05	4.0301	0.0016923	4.1536	0.0017441	419.9080604721065	37.473	0.88996	37.566	37.17	38.06	0.093014					98	32	4	0	0	0	0.37728	1	7758	7758		14.218	2.5868	1	363960			17701	10732	9939	9940	22551	22551					0.08355696542912483
KDGKQISPK	9	Unmodified	_KDGKQISPK_					0	0	0		nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93-2|PALLD;ENSG00000129116|ENST00000505667|PALLD;ENST00000511682.1_1_4:169819766-169825111:+|nuORF	nc|ENSG00000129116|Q8WX93-5|PALLD	nc|ENSG00000129116|Q8WX93-5|PALLD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7750549316406	2	500.792924	999.571294	0.27817	0.00013931	-0.83839	-0.00041986	-0.56022	-0.00028055	500.7923517638617	26.109	0.85691	26.087	25.552	26.409	-0.022238					66	30	4	0	0	0	0.15763	1	4264	4264		29.841	4.8496	1	599520			17702	12695	9940	9941	22552	22552					0.07149145334551577
KDGRMVSH	8	Unmodified	_KDGRMVSH_					0	0	0		nc|ENSG00000133477|Q8NEG4-2|FAM83F;FAM83F|p.K448Rfs*23|1|0.19|ENSG00000133477|chr22:40021852-40021852|A/-|frameshift_variant;ENSG00000133477|ENST00000333407|FAM83F	nc|ENSG00000133477|Q8NEG4-2|FAM83F	nc|ENSG00000133477|Q8NEG4-2|FAM83F	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2288513183594	2	465.234719	928.454884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.093	1	24.054	23.554	24.554	-0.038927								0	0	0	0.35663	1	3644	3644		11.64	0.81637	1				17703	3714	9941	9942	22553	22553					-0.012204964369857407
KDGVPKDR	8	Unmodified	_KDGVPKDR_					0	0	0		ENSG00000205832|ENST00000444310|C16orf96	ENSG00000205832|ENST00000444310|C16orf96	ENSG00000205832|ENST00000444310|C16orf96	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7687683105469	2	457.756341	913.498129	-0.17813	-8.1538E-05	-0.11959	-5.4742E-05	-0.29771	-0.00013628	457.75624490128985	14.281	0.41334	14.215	14.07	14.483	-0.066068					26	14	3	0	0	0	0.34353	1	689	689		4.756	0	1	75760			17704	8305	9942	9943	22554	22554					0.03792016611942017
KDGYQRLGK	9	Unmodified	_KDGYQRLGK_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|52|3|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|52|3|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|52|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7952270507812	2	532.795998	1063.57744	0.3276	0.00017454	-0.40469	-0.00021562	-0.077088	-4.1072E-05	532.7955993761065	22.441	0.65255	22.441	22.222	22.875	0					54	22	3	0	0	0	0.20381	1	3128	3128		29.841	7.1043	1	366050			17705	12444	9943	9944	22555	22555					0.048196635660815446
KDGYQRLGK	9	Unmodified	_KDGYQRLGK_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|52|3|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|52|3|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|52|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7952270507812	2	532.795998	1063.57744	0.28342	0.000151	-0.61777	-0.00032914	-0.33435	-0.00017814	532.7955269272182	22.614	0.73896	22.569	22.238	22.977	-0.044867					57	25	3	0	0	0	0.23749	1	3167	3167		20.415	3.3016	1	306330			17706	12444	9943	9944	22556	22556					0.048196635660815446
KDIDNHQLQ	9	Unmodified	_KDIDNHQLQ_					0	0	0			REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7929077148438	2	555.780544	1109.54654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.445	1	42.445	41.945	42.945	0								0	0	0	0.21009	1	9238	9238		19.257	3.1079	1		+		17707	14569	9944	9945	22557	22557					-0.003855345388274145
KDIFQEIF	8	Unmodified	_KDIFQEIF_					0	0	0		nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2	nc|ENSG00000182054|P48735-2|IDH2	nc|ENSG00000182054|P48735-2|IDH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2759399414062	2	520.276575	1038.5386	0.40676	0.00021163	-0.3475	-0.0001808	0.059263	3.0833E-05	520.2763303152608	80.874	3.1032	80.874	80.097	83.2	0					283	126	5	0	0	0	0.3812	1	20950	20950		21.537	2.28	1	6954600			17708	7266	9945	9946	22558	22558					0.020869382116870838
KDILVQWLY	9	Unmodified	_KDILVQWLY_					0	0	0		ENST00000519308.1_1_9:5114002-5114779:+|nuORF	ENST00000519308.1_1_9:5114002-5114779:+|nuORF	ENST00000519308.1_1_9:5114002-5114779:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.75537109375	2	589.334424	1176.6543	0.37244	0.00021949	0.40831	0.00024063	0.78075	0.00046012	589.3340052548045	56.88	0.53032	56.959	56.756	57.287	0.078674					54	19	4	0	0	0	0.25202	1	13655	13655		10.824	0	1	983330			17709	11455	9946	9947	22559	22559					0.07303462062577637
KDIYFLHKI	9	Unmodified	_KDIYFLHKI_					0	0	0		ENSG00000198915|ENST00000395810|RASGEF1A;nc|ENSG00000198915|Q8N9B8-2|RASGEF1A	ENSG00000198915|ENST00000395810|RASGEF1A	ENSG00000198915|ENST00000395810|RASGEF1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3340454101562	2	588.842416	1175.67028	0.35167	0.00020708	-2.7205	-0.0016019	-2.3688	-0.0013948	588.8406049559336	57.335	0.55522	57.421	57.104	57.659	0.085621					30	19	2	0	0	0	0.22061	1	13754	13754		24.021	1.2843	1	541210			17710	8158	9947	9948	22560	22560					0.08947168299459918
KDKAIKTPK	9	Unmodified	_KDKAIKTPK_					0	0	0		nc|ENSG00000140534|Q7Z2Z1-2|TICRR;ENSG00000140534|ENST00000268138|TICRR	nc|ENSG00000140534|Q7Z2Z1-2|TICRR	nc|ENSG00000140534|Q7Z2Z1-2|TICRR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2879028320312	2	514.826766	1027.63898	-0.027706	-1.4264E-05	0.074018	3.8106E-05	0.046312	2.3842E-05	514.8265685671632	12.613	0.28364	12.613	12.468	12.751	0					17	9	3	0	0	0	0.25066	1	185	185		11.64	0	1	45001			17711	4315	9948	9949	22561	22561					0.12626595265373908
KDKAIKTPK	9	Unmodified	_KDKAIKTPK_					0	0	0		nc|ENSG00000140534|Q7Z2Z1-2|TICRR;ENSG00000140534|ENST00000268138|TICRR	nc|ENSG00000140534|Q7Z2Z1-2|TICRR	nc|ENSG00000140534|Q7Z2Z1-2|TICRR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2880859375	2	514.826766	1027.63898	-0.052861	-2.7214E-05	0.092475	4.7609E-05	0.039614	2.0394E-05	514.8267092662547	12.625	0.20956	12.526	12.434	12.644	-0.09838					11	6	2	0	0	0	0.25622	1	189	189		7.2892	0.56607	1	53753			17712	4315	9948	9949	22562	22562					0.12626595265373908
KDKERLRELK	10	Unmodified	_KDKERLRELK_					0	0	0			REV__ENST00000465604.1_1_1:26227509-26228203:-|nuORF	REV__ENST00000465604.1_1_1:26227509-26228203:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.93310546875	3	438.933254	1313.77793	-0.30224	-0.00013266	-0.21965	-9.6411E-05	-0.52189	-0.00022908	438.933161550592	27.689	0.56659	27.678	27.499	28.066	-0.011562					47	19	3	0	0	0	0.29637	1	4740	4740		20.871	0.46025	1	412840	+		17713	14984	9949	9950	22563	22563					0.13359513162890835
KDKIREKN	8	Unmodified	_KDKIREKN_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7719116210938	2	515.803823	1029.59309	0.055359	2.8554E-05	0.56194	0.00028985	0.6173	0.0003184	515.8040689048765	16.538	0.50409	16.424	16.219	16.723	-0.11434					30	17	2	0	0	0	0.30795	1	1361	1361		30.637	3.5482	1	171750	+		17714	16705;23038	9950	9951	22564	22564					0.07947950083121214
KDKIREKN	8	Unmodified	_KDKIREKN_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.771484375	2	515.803823	1029.59309	0.17789	9.1754E-05	0.034518	1.7804E-05	0.2124	0.00010956	515.8038092983468	16.516	0.4375	16.453	16.266	16.703	-0.062534					26	14	2	0	0	0	0.30795	1	1345	1345		30.637	3.7529	1	181740	+		17715	16705;23038	9950	9951	22565	22565					0.07947950083121214
KDKKGKGGTK	10	Unmodified	_KDKKGKGGTK_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.298828125	2	523.819473	1045.62439	0.13922	7.2925E-05	-0.72595	-0.00038026	-0.58673	-0.00030734	523.8192481612509	12.629	0.19805	12.629	12.526	12.724	0					13	6	3	0	0	0	0.31691	1	178	178		9.3831	2.66	1	46759			17716	12692	9951	9952	22566	22566					0.1034052311722462
KDKLDGDYIGR	11	Unmodified	_KDKLDGDYIGR_					0	0	0			REV__ENSG00000100652|ENST00000216540|SLC10A1	REV__ENSG00000100652|ENST00000216540|SLC10A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.3370971679688	2	640.335684	1278.65681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.54	1	22.54	22.04	23.04	0								0	0	0	0.37707	1	3176	3176		2.2828	0.63015	1		+		17717	14221	9952	9953	22567	22567					0.028632657295474928
KDKRDVYYR	9	Unmodified	_KDKRDVYYR_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1;ENST00000487353.5_1_X:48336396-48336561:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.54248046875	3	414.891166	1241.65167	-0.29747	-0.00012342	-0.090152	-3.7403E-05	-0.38762	-0.00016082	414.8912411435359	15.426	0.31712	15.426	15.181	15.498	0					23	10	3	0	0	0	0.2615	1	954	954		0.96228	0	1	41217			17718	884	9953	9954	22568	22568					0.0405100665759619
KDKRELPK	8	Unmodified	_KDKRELPK_					0	0	0			REV__nc|ENSG00000167131|Q8IW40-2|CCDC103	REV__nc|ENSG00000167131|Q8IW40-2|CCDC103	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.83697509765625	2	507.308741	1012.60293	-0.037397	-1.8972E-05	-2.1912	-0.0011116	-2.2286	-0.0011306	507.3074904589932	12.347	0.15933	12.347	12.273	12.433	0					6	4	2	0	0	0	0.34408	1	106	106		2.3027	0.4585	1	15422	+		17719	17367	9954	9955	22569	22569					0.09713138088511641
KDLDSYLKTR	10	Unmodified	_KDLDSYLKTR_					0	0	0		CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8408203125	2	619.840602	1237.66665	-0.074489	-4.6171E-05	0.49832	0.00030888	0.42383	0.00026271	619.8408442254573	39.507	0.72831	39.507	39.268	39.996	0					62	26	3	0	0	0	0.29637	1	8359	8359		29.841	0	1	701400			17720	188	9955	9956	22570	22570					0.05732453734935916
KDLEYFEI	8	Unmodified	_KDLEYFEI_					0	0	0			REV__ENST00000567697.1_1_16:8904837-8941679:+|nuORF	REV__ENST00000567697.1_1_16:8904837-8941679:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2821655273438	2	528.76604	1055.51753	0.50275	0.00026583	4.2196	0.0022312	4.7223	0.002497	528.7686057611152	44.276	0.13311	44.351	44.229	44.362	0.075047					6	4	2	0	0	0	0.31518	1	9793	9793		29.082	2.1979	1	111330	+		17721	16045	9956	9957	22571	22571					-0.00801071887804028
KDLIKKSL	8	Unmodified	_KDLIKKSL_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.2725524902344	2	472.810585	943.606617	0.11204	5.2972E-05	0.086056	4.0688E-05	0.19809	9.366E-05	472.81057861498175	22.274	0.37704	22.174	22.045	22.422	-0.10034					20	13	2	0	0	0	0.34167	1	3124	3124		11.64	0	1	52171			17722	6791	9957	9958	22572	22572					0.1325580786236742
KDLILPKISDP	11	Unmodified	_KDLILPKISDP_					0	0	0		ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8683471679688	2	619.871371	1237.72819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.95	1	113.93	113.43	114.43	-0.019096								0	0	0	0.37501	1	29605	29605		2.7352	0.23671	1				17723	5163	9958	9959	22573	22573					0.11883385434202864
KDLKEKHK	8	Unmodified	_KDLKEKHK_					0	0	0		nc|ENSG00000117245|Q9P2E2|KIF17;ENSG00000117245|ENST00000400463|KIF17;ENST00000477167.5_1_1:20991079-21011627:-|nuORF	nc|ENSG00000117245|Q9P2E2|KIF17	nc|ENSG00000117245|Q9P2E2|KIF17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7977905273438	2	513.308741	1024.60293	0.50576	0.00025961	-0.3409	-0.00017499	0.16487	8.4628E-05	513.3086043357599	40.58	0.78583	40.58	40.283	41.069	0					82	28	4	0	0	0	0.4354	1	8700	8700		10.824	1.4408	1	1806000			17724	2785	9959	9960	22574	22574					0.0916113808850696
KDLKEKHK	8	Unmodified	_KDLKEKHK_					0	0	0		nc|ENSG00000117245|Q9P2E2|KIF17;ENSG00000117245|ENST00000400463|KIF17;ENST00000477167.5_1_1:20991079-21011627:-|nuORF	nc|ENSG00000117245|Q9P2E2|KIF17	nc|ENSG00000117245|Q9P2E2|KIF17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7978515625	2	513.308741	1024.60293	0.35847	0.00018401	-0.16152	-8.2908E-05	0.19696	0.0001011	513.3087149647703	40.376	0.65877	40.476	40.201	40.86	0.099403					66	23	4	0	0	0	0.4354	1	8591	8591		10.824	1.4408	1	2126500			17725	2785	9959	9960	22575	22575					0.0916113808850696
KDLKVDKR	8	Unmodified	_KDLKVDKR_					0	0	0			REV__nc|ENSG00000170776|Q12802-4|AKAP13	REV__nc|ENSG00000170776|Q12802-4|AKAP13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2909240722656	2	501.308741	1000.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.742	1	13.676	13.176	14.176	-0.066068								0	0	0	0.27792	1	515	515		32.305	1.6689	1		+		17726	17596	9960	9961	22576	22576					0.10265138088504955
KDLQSADKE	9	Unmodified	_KDLQSADKE_					0	0	0		ENST00000473195.5_1_3:49866538-49882012:-|nuORF;ENSG00000183763|ENST00000331456|TRAIP	ENST00000473195.5_1_3:49866538-49882012:-|nuORF	ENST00000473195.5_1_3:49866538-49882012:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7734375	2	517.261653	1032.50875	0.31901	0.00016501	2.7085	0.001401	3.0275	0.001566	517.7678429308537	24.523	0.17998	24.523	24.395	24.575	0					8	5	3	0	0	0	0.24848	1	3790	3790		13.906	3.0821	1	32834			17727	7402	9961	9962	22577	22577					-0.006200455242833414
KDLRGQLK	8	Unmodified	_KDLRGQLK_					0	0	0		ENST00000531657.1_1_11:70218293-70228249:+|nuORF;ENST00000526262.5_1_11:70189825-70228249:+|nuORF;ENST00000532504.5_1_11:70185286-70228249:+|nuORF;nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1	ENST00000531657.1_1_11:70218293-70228249:+|nuORF	ENST00000531657.1_1_11:70218293-70228249:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2773742675781	2	479.295633	956.576714	0.32744	0.00015694	-0.7467	-0.00035789	-0.41926	-0.00020095	479.2952123173108	23.676	0.54808	23.637	23.391	23.939	-0.038927					37	18	3	0	0	0	0.34294	1	3476	3476		7.2892	0	1	120870			17728	3577	9962	9963	22578	22578					0.0966886891702643
KDLSKANEK	9	Unmodified	_KDLSKANEK_					0	0	0			REV__ENSG00000155816|ENST00000319653|FMN2	REV__ENSG00000155816|ENST00000319653|FMN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7734375	2	516.787838	1031.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.57	1	24.57	24.07	25.07	0								0	0	0	0.22666	1	3790	3790		13.906	0	1		+		17729	16714	9963	9964	22579	22579					0.04660537609311177
KDLVGIFKMN	10	Unmodified	_KDLVGIFKMN_					0	0	0		ENSG00000196151|ENST00000359774|WDSUB1;nc|ENSG00000196151|Q8N9V3-2|WDSUB1	ENSG00000196151|ENST00000359774|WDSUB1	ENSG00000196151|ENST00000359774|WDSUB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3447875976562	2	582.825909	1163.63727	0.29092	0.00016956	3.9313	0.0022913	4.2222	0.0024608	582.8286543753383	57.095	0.36177	57.174	57.068	57.43	0.078671					16	12	2	0	0	0	0.23216	1	13752	13752		34.932	6.4452	1	170630			17730	7827	9964	9965	22580	22580					0.06199218185111022
KDLYHLLK	8	Unmodified	_KDLYHLLK_					0	0	0		ENST00000561931.1_1_16:69060550-69117561:+|nuORF;ENSG00000103047|ENST00000261778|TANGO6	ENST00000561931.1_1_16:69060550-69117561:+|nuORF	ENST00000561931.1_1_16:69060550-69117561:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.819091796875	2	515.30821	1028.60187	0.20954	0.00010798	0.14864	7.6596E-05	0.35818	0.00018457	515.3081628911945	65.363	0.93769	65.363	65.017	65.955	0					72	33	3	0	0	0	0.32886	1	16448	16448		15.847	0	1	530500			17731	1804	9965	9966	22581	22581					0.08870923719587154
KDLYQYNL	8	Unmodified	_KDLYQYNL_					0	0	0			REV__nc|ENSG00000144560|Q14135-4|VGLL4	REV__nc|ENSG00000144560|Q14135-4|VGLL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.82470703125	2	528.771657	1055.52876	0.36601	0.00019353	0.023777	1.2573E-05	0.38979	0.00020611	528.7715829508963	57.612	0.69531	57.595	57.31	58.005	-0.0172					42	25	2	0	0	0	0.32435	1	13834	13834		11.64	0	1	984010	+		17732	16243	9966	9967	22582	22582					0.00321750206330762
KDNDLKNTIK	10	Unmodified	_KDNDLKNTIK_					0	0	0		ENST00000514066.6_1_5:68670498-68677828:+|nuORF	ENST00000514066.6_1_5:68670498-68677828:+|nuORF	ENST00000514066.6_1_5:68670498-68677828:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2941284179688	2	594.832777	1187.651	0.27154	0.00016152	-1.4561	-0.00086611	-1.1845	-0.00070459	594.8319269631041	33.84	0.44225	33.907	33.711	34.153	0.066704					31	15	3	0	0	0	0.31958	1	6663	6663		5.2969	0	1	254580			17733	11409	9967	9968	22583	22583					0.06468167217872178
KDNFLTSVS	9	Unmodified	_KDNFLTSVS_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2823486328125	2	505.761289	1009.50803	0.51197	0.00025894	-1.8603	-0.00094089	-1.3484	-0.00068195	505.760508042806	45.572	0.31561	45.632	45.418	45.734	0.059837					13	10	2	0	0	0	0.1854	1	10183	10183		32.305	0	1	102030			17734	4586	9968	9969	22584	22584					0.0036515982667424396
KDPFPGHVLL	10	Unmodified	_KDPFPGHVLL_					0	0	0		UBASH3A|p.Y543Lfs*84|1|0.04|ENSG00000160185|chr21:42442590-42442591|-/C|frameshift_variant	UBASH3A|p.Y543Lfs*84|1|0.04|ENSG00000160185|chr21:42442590-42442591|-/C|frameshift_variant	UBASH3A|p.Y543Lfs*84|1|0.04|ENSG00000160185|chr21:42442590-42442591|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3198852539062	2	561.818941	1121.62333	0.21834	0.00012267	-2.2461	-0.0012619	-2.0277	-0.0011392	561.8168150581342	19.262	0.71573	19.147	18.863	19.579	-0.11592					50	24	3	0	0	0	0.41242	1	2244	2244		1.1933	0	1	68247			17735	23408	9969	9970	22585	22585					0.06738308748322197
KDPTDRPH	8	Unmodified	_KDPTDRPH_					0	0	0		ENST00000354670.8_1_15:40382930-40383443:-|nuORF	ENST00000354670.8_1_15:40382930-40383443:-|nuORF	ENST00000354670.8_1_15:40382930-40383443:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.24359130859375	2	483.243598	964.472643	-0.11435	-5.5261E-05	0.95515	0.00046157	0.8408	0.00040631	483.24386651340944	13.693	0.31009	13.693	13.537	13.847	0					23	10	3	0	0	0	0.4354	1	502	502		10.824	0	1	129250			17736	9598	9970	9971	22586	22586					-0.011014579104767108
KDPTDRPH	8	Unmodified	_KDPTDRPH_					0	0	0		ENST00000354670.8_1_15:40382930-40383443:-|nuORF	ENST00000354670.8_1_15:40382930-40383443:-|nuORF	ENST00000354670.8_1_15:40382930-40383443:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2438659667969	2	483.243598	964.472643	-0.13942	-6.7373E-05	0.88219	0.00042631	0.74277	0.00035894	483.24387514773036	13.776	0.36483	13.671	13.538	13.903	-0.10466					28	12	3	0	0	0	0.42077	1	527	527		15.847	2.3393	1	118550			17737	9598	9970	9971	22587	22587					-0.011014579104767108
KDQAKPGQT	9	Unmodified	_KDQAKPGQT_					0	0	0			REV__ENSG00000180035|ENST00000613509|ZNF48	REV__ENSG00000180035|ENST00000613509|ZNF48	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.2870788574219	2	486.759081	971.503609	-0.086546	-4.2127E-05	1.0139	0.00049352	0.92735	0.00045139	486.7596342276294	12.8	0.17589	12.8	12.724	12.9	0					8	5	2	0	0	0	0.25526	1	218	218		7.9102	1.187	1	32739	+		17738	18099	9971	9972	22588	22588					0.016716954037633514
KDQAKPGQT	9	Unmodified	_KDQAKPGQT_					0	0	0			REV__ENSG00000180035|ENST00000613509|ZNF48	REV__ENSG00000180035|ENST00000613509|ZNF48	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	486.759081	971.503609	-0.066993	-3.261E-05	0.32271	0.00015708	0.25572	0.00012447	486.7595527736365	13.147	0.23452	13.048	12.894	13.129	-0.099291	0.12401	-0.00048763	NaN	7.9102	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15666	+		17739	18099	9971	9972							0.016716954037633514
KDQKQYTQKI	10	Unmodified	_KDQKQYTQKI_					0	0	0			REV__USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	REV__USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.5823974609375	3	427.238343	1278.6932	-0.15762	-6.7343E-05	0.05287	2.2588E-05	-0.10475	-4.4755E-05	427.2382384042411	19.9	0.77816	19.9	19.401	20.18	0					62	28	3	0	0	0	0.31942	1	2299	2299		6.1918	6.1918	1	115600	+		17740	16977	9972	9973	22589	22589					0.0650014262625973
KDQTQTLPHV	10	Unmodified	_KDQTQTLPHV_					0	0	0			REV__nc|ENSG00000158805|Q8N554-2|ZNF276;REV__ENST00000564004.5_1_16:89799827-89804651:+|nuORF	REV__ENST00000564004.5_1_16:89799827-89804651:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.8116455078125	2	583.811845	1165.60914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.139	1	19.083	18.583	19.583	-0.055693								0	0	0	0.38187	1	2142	2142		1.3295	0.13619	1		+		17741	16824;22335	9973	9974	22590	22590					0.03295611529370035
KDRELRPEE	9	Unmodified	_KDRELRPEE_					0	0	0		nc|ENSG00000167791|Q9NPB3-2|CABP2	nc|ENSG00000167791|Q9NPB3-2|CABP2	nc|ENSG00000167791|Q9NPB3-2|CABP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.306640625	2	586.306926	1170.5993	0.26126	0.00015318	-1.7411	-0.0010208	-1.4798	-0.00086764	586.3058616786243	17.754	2.0563	17.754	17.069	19.125	0					126	71	4	0	0	0	0.31417	1	1713	1713		6.7232	0.51738	1	576070			17742	12823	9974	9975	22591	22591					0.020824235239842892
KDRLRIKPG	9	Unmodified	_KDRLRIKPG_					0	0	0			REV__ENST00000495327.1_1_7:127953176-127954962:-|nuORF	REV__ENST00000495327.1_1_7:127953176-127954962:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2623901367188	2	541.843282	1081.67201	0.12749	6.908E-05	-0.086398	-4.6814E-05	0.041093	2.2266E-05	541.8431771096095	12.766	0.34028	12.766	12.612	12.952	0					18	11	2	0	0	0	0.25526	1	256	256		7.9102	1.187	1	102510	+		17743	14517	9975	9976	22592	22592					0.13444222108046233
KDRLRIKPG	9	Unmodified	_KDRLRIKPG_					0	0	0			REV__ENST00000495327.1_1_7:127953176-127954962:-|nuORF	REV__ENST00000495327.1_1_7:127953176-127954962:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	541.843282	1081.67201	0.2012	0.00010902	-0.25049	-0.00013573	-0.049295	-2.671E-05	541.8430670639191	12.789	0.37357	12.69	12.521	12.894	-0.099291	-0.037804	-0.0001817	NaN	7.9102	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79171	+		17744	14517	9975	9976							0.13444222108046233
KDRLRIKPG	9	Unmodified	_KDRLRIKPG_					0	0	0			REV__ENST00000495327.1_1_7:127953176-127954962:-|nuORF	REV__ENST00000495327.1_1_7:127953176-127954962:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.843282	1081.67201	0.1332	7.2176E-05	0.037608	2.0377E-05	0.17081	9.2553E-05	541.8432864165859	12.794	0.3562	12.727	12.58	12.936	-0.067496	-0.00088431	0.00013052	NaN	7.9102	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80884	+		17745	14517	9975	9976							0.13444222108046233
KDRRLKKKH	9	Unmodified	_KDRRLKKKH_					0	0	0		nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;nc|ENSG00000139220|O75334-7|PPFIA2;nc|ENSG00000139220|O75334-5|PPFIA2;nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-8|PPFIA2;nc|ENSG00000143847|O75335|PPFIA4;nc|ENSG00000143847|O75335-2|PPFIA4;nc|ENSG00000143847|O75335-1|PPFIA4;ENSG00000143847|ENST00000295706|PPFIA4	nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000143847|O75335|PPFIA4	nc|ENSG00000143847|O75335|PPFIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.92889404296875	3	403.594796	1207.76256	-0.44709	-0.00018044	-0.35591	-0.00014364	-0.803	-0.00032409	403.59469171398877	12.494	0.74502	12.494	12.07	12.815	0					29	27	2	0	0	0	0.34519	1	171	171		2.086	0.63089	1	64193			17746	4220;12735	9976	9977	22593	22593					0.16698691156352652
KDRSASHL	8	Unmodified	_KDRSASHL_					0	0	0		nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7381286621094	2	457.246141	912.477728	-0.060945	-2.7867E-05	-0.33376	-0.00015261	-0.3947	-0.00018048	457.2457578777761	16.798	0.52405	16.684	16.56	17.084	-0.11434					25	18	2	0	0	0	0.34294	1	1556	1556		3.9444	0	1	65275			17747	5939	9977	9978	22594	22594					0.017988459521461664
KDRSASHL	8	Unmodified	_KDRSASHL_					0	0	0		nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	457.246141	912.477728	0.17915	8.1917E-05	-0.077186	-3.5293E-05	0.10197	4.6624E-05	457.2458751770334	16.732	0.43953	16.669	16.558	16.997	-0.062534	-0.0073687	0.0001023	NaN	3.9444	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50114			17748	5939	9977	9978							0.017988459521461664
KDSFIKYYSI	10	Unmodified	_KDSFIKYYSI_					0	0	0			REV__ENSG00000078098|ENST00000188790|FAP	REV__ENSG00000078098|ENST00000188790|FAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.8982849121094	3	421.892173	1262.65469	-0.2053	-8.6613E-05	0.55551	0.00023437	0.35022	0.00014775	421.89247022154643	16.571	0.59105	16.456	16.02	16.611	-0.11434					57	20	4	0	0	0	0.30815	1	1416	1416		21.799	3.0782	1	269840	+		17749	13852	9978	9979	22595	22595					0.033868369917627206
KDSHLKRRR	9	Unmodified	_KDSHLKRRR_					0	0	0		nc|ENSG00000198865|Q4G0S7-2|CCDC152;ENSG00000198865|ENST00000361970|CCDC152	nc|ENSG00000198865|Q4G0S7-2|CCDC152	nc|ENSG00000198865|Q4G0S7-2|CCDC152	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.3589477539062	2	598.360162	1194.70577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.86	1	100.86	100.36	101.36	0								0	0	0	0.264	1	26922	26922		1.8442	0	1				17750	8147	9979	9980	22596	22596					0.11620643599826508
KDSTHVHSHKK	11	Unmodified	_KDSTHVHSHKK_					0	0	0			REV__ENSG00000139800|ENST00000267294|ZIC5	REV__ENSG00000139800|ENST00000267294|ZIC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.26910400390625	3	435.233704	1302.67928	-0.19841	-8.6353E-05	2.3471	0.0010215	2.1487	0.00093518	435.235038861784	17.308	0.58022	17.19	16.965	17.545	-0.11739					27	20	3	0	0	0	0.33169	1	1529	1529		2.084	0	1	43727	+		17751	16007	9980	9981	22597	22597					0.04004909917830446
KDSWYLRKK	9	Unmodified	_KDSWYLRKK_					0	0	0		ENST00000597909.5_2_19:53391499-53393579:-|nuORF	ENST00000597909.5_2_19:53391499-53393579:-|nuORF	ENST00000597909.5_2_19:53391499-53393579:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.1742858886719	3	408.568024	1222.68224	-0.13372	-5.4634E-05	-1.0297	-0.00042069	-1.1634	-0.00047532	408.90182993830075	16.762	0.49312	16.762	16.548	17.041	0					27	16	2	0	0	0	0.259	1	1476	1476		5.2969	1.7098	1	134670			17752	12235	9981	9982	22598	22598					0.07980785042627758
KDVISVQLE	9	Unmodified	_KDVISVQLE_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.771484375	2	515.792589	1029.57063	0.24094	0.00012427	-0.029521	-1.5227E-05	0.21142	0.00010905	515.7925440337941	16.886	0.55562	16.824	16.414	16.969	-0.062534					31	19	2	0	0	0	0.24848	1	1345	1345		13.906	0	1	111450			17753	7924	9982	9983	22599	22599					0.05702305894828896
KDVKEFEK	8	Unmodified	_KDVKEFEK_					0	0	0		nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.769287109375	2	511.779482	1021.54441	0.11872	6.0756E-05	1.1397	0.00058325	1.2584	0.00064401	511.78130477378716	16.151	0.77667	16.089	15.781	16.558	-0.062534					95	26	5	0	0	0	0.43302	1	1274	1274		11.64	0	1	642180			17754	12769	9983	9984	22600	22600					0.034500367233818
KDVLTRIVA	9	Unmodified	_KDVLTRIVA_					0	0	0			REV__nc|ENSG00000159579|Q96DX4-2|RSPRY1	REV__nc|ENSG00000159579|Q96DX4-2|RSPRY1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2835998535156	2	507.818941	1013.62333	-0.022159	-1.1253E-05	-0.027889	-1.4163E-05	-0.050048	-2.5415E-05	507.81885541785044	13.041	0.32845	13.041	12.925	13.254	0					24	11	3	0	0	0	0.25202	1	359	359		10.824	0.75	1	120360	+		17755	22369	9984	9985	22601	22601					0.1170630874833023
KDWGIYLLS	9	Unmodified	_KDWGIYLLS_					0	0	0			REV__ENST00000557929.5_1_15:78834269-78838932:+|nuORF	REV__ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7974243164062	2	547.797675	1093.5808	0.24248	0.00013283	-1.3415	-0.00073484	-1.099	-0.00060202	547.7971658489083	19.373	0.47187	19.373	19.183	19.655	0					31	16	3	0	0	0	0.33018	1	2235	2235		4.3292	0	1	64861	+		17756	13526	9985	9986	22602	22602					0.03774913620077314
KDWGIYLLS	9	Unmodified	_KDWGIYLLS_					0	0	0			REV__ENST00000557929.5_1_15:78834269-78838932:+|nuORF	REV__ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	547.797675	1093.5808	0.24248	0.00013283	-1.3415	-0.00073484	-1.099	-0.00060202	547.7971658489083	19.373	0.47187	19.373	19.183	19.655	0	-0.029937	0.00021941	NaN	4.3292	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64861	+		17757	13526	9985	9986							0.03774913620077314
KDWGIYLLS	9	Unmodified	_KDWGIYLLS_					0	0	0			REV__ENST00000557929.5_1_15:78834269-78838932:+|nuORF	REV__ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	547.797675	1093.5808	0.48843	0.00026756	-1.4083	-0.00077144	-0.91982	-0.00050388	547.7970781203986	19.462	0.47776	19.406	19.227	19.705	-0.055693	0.0029969	0.00014622	NaN	4.3292	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74219	+		17758	13526	9985	9986							0.03774913620077314
KDWPPYLLCH	10	Unmodified	_KDWPPYLLCH_					0	0	0			REV__ENSG00000180210|ENST00000311907|F2	REV__ENSG00000180210|ENST00000311907|F2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.3184204101562	2	636.315709	1270.61686	0.29804	0.00018965	3.9826	0.0025342	4.2806	0.0027238	636.3180372358407	17.384	0.47367	17.384	17.186	17.66	0					22	16	2	0	0	0	0.41168	1	1613	1613		1.3295	0.13619	1	33449	+	+	17759	13250	9986	9987	22603	22603					-0.0076195247470423055
KDWRSNRR	8	Unmodified	_KDWRSNRR_					0	0	0			REV__ENST00000477049.1_1_9:135139628-135141576:-|nuORF	REV__ENST00000477049.1_1_9:135139628-135141576:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.303466796875	2	559.302313	1116.59007	0.062663	3.5047E-05	2.1404	0.0011971	2.2031	0.0012322	559.30339014028	14.629	0.31358	14.524	14.368	14.681	-0.10466					24	10	3	0	0	0	0.45169	1	794	794		5.2307	0.90143	1	66069	+		17760	14551	9987	9988	22604	22604					0.03644119748992125
KDYIKANR	8	Unmodified	_KDYIKANR_					0	0	0			REV__PLD1|p.T996K|1|0.18|ENSG00000075651|chr3:171605312-171605312|G/T|missense_variant	REV__PLD1|p.T996K|1|0.18|ENSG00000075651|chr3:171605312-171605312|G/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.740966796875	2	504.285266	1006.55598	0.39599	0.00019969	-0.79738	-0.00040211	-0.40139	-0.00020241	504.2849562975016	30.382	0.50595	30.382	30.113	30.619	0					24	17	2	0	0	0	0.32435	1	5512	5512		11.64	3.7301	1	108110	+		17761	23287	9988	9989	22605	22605					0.052962785373551924
KDYIKANR	8	Unmodified	_KDYIKANR_					0	0	0			REV__PLD1|p.T996K|1|0.18|ENSG00000075651|chr3:171605312-171605312|G/T|missense_variant	REV__PLD1|p.T996K|1|0.18|ENSG00000075651|chr3:171605312-171605312|G/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7409973144531	2	504.285266	1006.55598	0.36221	0.00018266	-3.6789	-0.0018552	-3.3167	-0.0016726	504.78395018995064	30.482	0.58989	30.51	30.159	30.749	0.027946					41	20	3	0	0	0	0.33993	1	5511	5511		11.64	0	1	129310	+		17762	23287	9988	9989	22606	22606					0.052962785373551924
KDYKQMFEK	9	Unmodified	_KDYKQMFEK_					0	0	0			REV__ENSG00000172137|ENST00000302628|CALB2	REV__ENSG00000172137|ENST00000302628|CALB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.88037109375	3	406.205875	1215.59579	-0.060962	-2.4763E-05	-2.4322	-0.00098798	-2.4932	-0.0010127	406.20498668229374	24.42	0.61741	24.348	23.966	24.584	-0.072559					28	20	2	0	0	0	0.25346	1	3786	3786		10.8	5.9025	1	56931	+		17763	17694	9989	9990	22607	22607					-0.0033796257423546194
KDYRFLEL	8	Unmodified	_KDYRFLEL_					0	0	0		nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000197959|Q9UQ16-2|DNM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3359985351562	2	542.295299	1082.57605	0.39772	0.00021568	0.24461	0.00013265	0.64233	0.00034833	542.2954860589807	96.141	0.093208	96.218	96.166	96.259	0.077408					12	8	2	0	0	0	0.34367	1	25686	25686		1.8442	0	1	71857			17764	8018	9990	9991	22608	22608					0.03806029477323136
KEAEKLKR	8	Unmodified	_KEAEKLKR_					0	0	0			REV__nc|ENSG00000121289|Q96ST8-3|CEP89	REV__nc|ENSG00000121289|Q96ST8-3|CEP89	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2911071777344	2	501.308741	1000.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.728	1	13.623	13.123	14.123	-0.10466								0	0	0	0.28879	1	514	514		30.637	1.555	1		+		17765	15114	9991	9992	22609	22609					0.10265138088516323
KEAELTKEK	9	Unmodified	_KEAELTKEK_					0	0	0			REV__ENSG00000128849|ENST00000281282|CGNL1	REV__ENSG00000128849|ENST00000281282|CGNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.80126953125	2	538.303321	1074.59209	0.14126	7.6041E-05	-1.686	-0.00090756	-1.5447	-0.00083152	538.302518004496	13.804	0.31017	13.738	13.55	13.861	-0.066067					17	10	2	0	0	0	0.25843	1	544	544		5.7319	0	1	141310	+		17766	15390	9992	9993	22610	22610					0.05777690923537193
KEAKIRQKE	9	Unmodified	_KEAKIRQKE_					0	0	0		ENST00000525971.6_1_12:85431954-85518298:+|nuORF;nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.3377685546875	2	565.33803	1128.66151	0.044295	2.5041E-05	-0.011715	-6.6229E-06	0.03258	1.8419E-05	565.3379683755849	14.213	0.46108	14.108	13.961	14.422	-0.10466					30	15	3	0	0	0	0.33911	1	703	703		2.9952	0.26005	1	325110			17767	3720	9993	9994	22611	22611					0.10232194662967231
KEAKIRQKE	9	Unmodified	_KEAKIRQKE_					0	0	0		ENST00000525971.6_1_12:85431954-85518298:+|nuORF;nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.3378295898438	2	565.33803	1128.66151	-0.079724	-4.5071E-05	0.013864	7.8379E-06	-0.06586	-3.7233E-05	565.3379443579503	14.188	0.50596	14.122	13.949	14.455	-0.066068					40	17	4	0	0	0	0.30459	1	691	691		8.1555	2.4237	1	266970			17768	3720	9993	9994	22612	22612					0.10232194662967231
KEALLLPR	8	Unmodified	_KEALLLPR_					0	0	0		chr14:103098918-103100204|467|16.81|0.0|20.68|+|2|EXOC3L4,EXOC3L4|1	chr14:103098918-103100204|467|16.81|0.0|20.68|+|2|EXOC3L4,EXOC3L4|1	chr14:103098918-103100204|467|16.81|0.0|20.68|+|2|EXOC3L4,EXOC3L4|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2947692871094	2	470.302927	938.591301	0.3616	0.00017006	-0.25052	-0.00011782	0.11108	5.2239E-05	470.30273035655256	60.862	1.1415	60.959	60.107	61.248	0.096985					93	41	5	0	0	0	0.42077	1	14880	14880		15.847	1.0089	1	2244400			17769	138	9994	9995	22613	22613					0.11954941065164348
KEARIRQQ	8	Unmodified	_KEARIRQQ_					0	0	0			REV__ENST00000493234.1_1_11:1955154-1956368:+|nuORF	REV__ENST00000493234.1_1_11:1955154-1956368:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.8140869140625	2	514.801614	1027.58868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.409	1	12.312	11.812	12.812	-0.096607								0	0	0	0.34734	1	120	120		15.847	1.0089	1		+		17770	15467	9995	9996	22614	22614					0.07598485660219012
KEASRLKSI	9	Unmodified	_KEASRLKSI_					0	0	0		ENSG00000139233|ENST00000266604|LLPH	ENSG00000139233|ENST00000266604|LLPH	ENSG00000139233|ENST00000266604|LLPH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2489624023438	2	516.314023	1030.61349	0.10374	5.356E-05	-0.26691	-0.00013781	-0.16317	-8.4248E-05	516.3137116331299	23.052	0.32753	23.052	22.845	23.173	0					17	10	2	0	0	0	0.25202	1	3358	3358		10.824	0	1	37975			17771	4222	9996	9997	22615	22615					0.09941120742928433
KEDILLATI	9	Unmodified	_KEDILLATI_					0	0	0		ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	ENSG00000145309|ENST00000273936|CABS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.30401611328125	2	508.305332	1014.59611	-0.031388	-1.5955E-05	-2.6822	-0.0013634	-2.7136	-0.0013793	508.30365766667035	12.851	0.80819	12.752	12.234	13.042	-0.099291					58	27	4	0	0	0	0.31763	1	301	301		6.2058	1.4498	1	308120			17772	4641	9997	9998	22616	22616					0.08939780417290422
KEEAARMSV	9	Unmodified	_KEEAARMSV_					0	0	0		ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2778015136719	2	510.760766	1019.50698	-0.0025416	-1.2981E-06	0.6037	0.00030835	0.60116	0.00030705	510.7614179612003	13.897	0.31462	13.897	13.74	14.055	0					18	10	2	0	0	0	0.24289	1	523	523		18.146	3.3081	1	52600			17773	7699	9998	9999	22617	22617					-0.001993778138853486
KEEDKEKTKL	10	Unmodified	_KEEDKEKTKL_					0	0	0		ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.3006591796875	2	624.345717	1246.67688	-0.022603	-1.4112E-05	0.66394	0.00041453	0.64133	0.00040041	624.346172097639	39.261	0.73684	39.261	38.958	39.695	0					55	26	3	0	0	0	0.26213	1	8293	8293		41.956	0	1	546970			17774	1490	9999	10000	22618	22618					0.063410166695121
KEEDKEKTKL	10	Unmodified	_KEEDKEKTKL_					0	0	0		ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.3014526367188	2	624.345717	1246.67688	-0.12862	-8.0303E-05	0.88878	0.00055491	0.76016	0.0004746	624.3461551781481	39.182	0.63171	39.275	39.003	39.635	0.09267					51	22	3	0	0	0	0.21413	1	8235	8235		49.554	0.027041	1	677400			17775	1490	9999	10000	22619	22619					0.063410166695121
KEEDKEKTKL	10	Unmodified	_KEEDKEKTKL_					0	0	0		ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3014526367188	2	624.345717	1246.67688	0.28445	0.00017759	0.015573	9.7229E-06	0.30002	0.00018732	624.346112362165	39.165	0.81342	39.265	38.923	39.736	0.099407					62	28	4	0	0	0	0.22872	1	8235	8235		45.74	3.4274	1	573960			17776	1490	9999	10000	22620	22620					0.063410166695121
KEEIQKNIFI	10	Unmodified	_KEEIQKNIFI_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	631.8621826171875	2	631.36117	1260.70779	0.038466	2.4286E-05	0.57887	0.00036548	0.61734	0.00038976	631.3615534037657	14.825	0.86928	14.715	14.51	15.38	-0.10982					65	30	3	0	0	0	0.40344	1	960	960		5.2969	0.39987	1	111670			17777	2037	10000	10001	22621	22621					0.08786214774431755
KEEKKEVKEEK	11	Unmodified	_KEEKKEVKEEK_					0	0	0			REV__nc|ENSG00000104722|P07197-2|NEFM	REV__nc|ENSG00000104722|P07197-2|NEFM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.25238037109375	3	468.596196	1402.76676	-0.2758	-0.00012924	-1.5722	-0.00073674	-1.848	-0.00086598	468.5956670514165	13.993	0.30984	13.888	13.713	14.023	-0.10466					16	10	2	0	0	0	0.33112	1	622	622		7.846	0	1	62324	+		17778	14416	10001	10002	22622	22622					0.08148646278073102
KEEKKEVKEEK	11	Unmodified	_KEEKKEVKEEK_					0	0	0			REV__nc|ENSG00000104722|P07197-2|NEFM	REV__nc|ENSG00000104722|P07197-2|NEFM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.25250244140625	3	468.596196	1402.76676	-0.14438	-6.7656E-05	-1.1359	-0.00053228	-1.2803	-0.00059994	468.59563254390304	13.947	0.23297	13.881	13.774	14.007	-0.066068					16	7	3	0	0	0	0.33274	1	612	612		3.5927	0	1	75493	+		17779	14416	10001	10002	22623	22623					0.08148646278073102
KEEKKEVKEEK	11	Unmodified	_KEEKKEVKEEK_					0	0	0			REV__nc|ENSG00000104722|P07197-2|NEFM	REV__nc|ENSG00000104722|P07197-2|NEFM	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	468.596196	1402.76676	-0.28515	-0.00013362	-1.2823	-0.0006009	-1.5675	-0.00073452	468.5957714839882	13.858	0.27859	13.858	13.714	13.992	0	-0.017785	-1.747E-05	NaN	10.016	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41009	+		17780	14416	10001	10002							0.08148646278073102
KEEKLHLNSL	10	Unmodified	_KEEKLHLNSL_					0	0	0			REV__ENST00000570055.5_1_16:70328730-70353576:+|nuORF	REV__ENST00000570055.5_1_16:70328730-70353576:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.514892578125	3	404.231189	1209.67174	-0.23002	-9.2981E-05	2.2831	0.00092291	2.0531	0.00082993	404.2321896050681	16.12	0.60426	16.057	15.838	16.442	-0.062534					34	20	2	0	0	0	0.3179	1	1302	1302		8.9762	1.0308	1	49306	+		17781	16779	10002	10003	22624	22624					0.07528757597560798
KEEKSVEYE	9	Unmodified	_KEEKSVEYE_					0	0	0		ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;TP53BP1|p.E1130Kfs*14|1|0.19|ENSG00000067369|chr15:43432470-43432470|C/-|frameshift_variant;TP53BP1|p.N1428Cfs*49|1|0.21|ENSG00000067369|chr15:43420686-43420689|AGTT/-|frameshift_variant;TP53BP1|p.L1477Rfs*8|1|0.24|ENSG00000067369|chr15:43420542-43420543|AG/-|frameshift_variant	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8095703125	2	570.774593	1139.53463	0.047224	2.6954E-05	-3.5012	-0.0019984	-3.4539	-0.0019714	570.7735213248787	12.859	0.25121	12.76	12.643	12.894	-0.09929					14	8	3	0	0	0	0.26031	1	263	263		3.5965	1.098	1	24347			17782	864	10003	10004	22625	22625					-0.029551960726621473
KEELARSAP	9	Unmodified	_KEELARSAP_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.290771484375	2	500.774731	999.534909	0.034428	1.724E-05	0.52305	0.00026193	0.55748	0.00027917	500.774920770258	13.78	0.42527	13.78	13.567	13.992	0					27	13	3	0	0	0	0.2451	1	496	496		15.847	0	1	109950	+		17783	16354	10004	10005	22626	22626					0.035122684378507074
KEEPSPGAPK	10	Unmodified	_KEEPSPGAPK_					0	0	0		ENST00000575094.5_1_12:9800878-9800986:+|nuORF	ENST00000575094.5_1_12:9800878-9800986:+|nuORF	ENST00000575094.5_1_12:9800878-9800986:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2761840820312	2	520.274564	1038.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.11	1	104.11	103.61	104.61	0.0011444								0	0	0	0.37355	1	27674	27674		4.897	0.141	1				17784	12044	10005	10006	22627	22627					0.016848487179913718
KEEQEQRH	8	Unmodified	_KEEQEQRH_					0	0	0			REV__ENST00000497317.5_1_1:155141901-155145703:-|nuORF	REV__ENST00000497317.5_1_1:155141901-155145703:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2623901367188	2	542.262519	1082.51048	0.13007	7.053E-05	-0.58581	-0.00031766	-0.45574	-0.00024713	542.2623233118204	12.866	0.61158	12.866	12.724	13.336	0					52	21	5	0	0	0	0.40115	1	256	256		19.257	3.1079	1	439000	+		17785	21683	10006	10007	22628	22628					-0.027469917156622614
KEEQEQRH	8	Unmodified	_KEEQEQRH_					0	0	0			REV__ENST00000497317.5_1_1:155141901-155145703:-|nuORF	REV__ENST00000497317.5_1_1:155141901-155145703:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.262451171875	2	542.262519	1082.51048	0.20487	0.00011109	-0.59151	-0.00032075	-0.38664	-0.00020966	542.2623196264174	12.923	0.60558	12.824	12.7	13.306	-0.099291					49	20	4	0	0	0	0.42077	1	275	275		15.847	1.0089	1	399030	+		17786	21683	10006	10007	22629	22629					-0.027469917156622614
KEEREERLLQK	11	Unmodified	_KEEREERLLQK_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.26348876953125	3	486.607207	1456.79979	0.46393	0.00022575	-2.3804	-0.0011583	-1.9165	-0.00093259	486.60628860242394	44.89	0.37527	44.965	44.808	45.183	0.075047					21	13	2	0	0	0	0.33189	1	9960	9960		3.5927	2.6671	1	133150	+		17787	16854	10007	10008	22630	22630					0.08966273120813639
KEERPRAA	8	Unmodified	_KEERPRAA_					0	0	0		ENSG00000167476|ENST00000300961|JSRP1	ENSG00000167476|ENST00000300961|JSRP1	ENSG00000167476|ENST00000300961|JSRP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.30120849609375	2	478.76724	955.519927	-0.18515	-8.8644E-05	-0.35604	-0.00017046	-0.54119	-0.0002591	478.7668923190766	12.233	0.21319	12.233	12.151	12.364	0					10	7	2	0	0	0	0.46491	1	48	48		0.69038	0	1	45602			17788	6178	10008	10009	22631	22631					0.04038821360506972
KEERTIKT	8	Unmodified	_KEERTIKT_					0	0	0			REV__ENSG00000187151|ENST00000334289|ANGPTL5	REV__ENSG00000187151|ENST00000334289|ANGPTL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2746276855469	2	502.790381	1003.56621	-0.0081717	-4.1086E-06	-1.8053	-0.0009077	-1.8135	-0.00091181	502.78946483227054	13.2	0.71561	13.101	12.7	13.416	-0.099291					32	24	2	0	0	0	0.34388	1	351	351		3.5965	1.5367	1	105170	+		17789	18493	10009	10010	22632	22632					0.06456841471970165
KEESEALDI	9	Unmodified	_KEESEALDI_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.25634765625	2	517.256037	1032.49752	0.45907	0.00023745	0.72674	0.00037591	1.1858	0.00061337	517.2563333648992	46.688	1.1365	46.743	46.355	47.491	0.054375					91	40	3	0	0	0	0.22188	1	10528	10528		20.454	1.1966	1	1424300			17790	3586	10010	10011	22633	22633					-0.017428676184181313
KEEYHLYKD	9	Unmodified	_KEEYHLYKD_					0	0	0		ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.7984008789062	2	612.798403	1223.58225	0.25756	0.00015783	-0.035899	-2.1999E-05	0.22166	0.00013583	612.7983728990818	51.478	0.86828	51.524	51.271	52.14	0.046574					88	31	4	0	0	0	0.15763	1	12045	12045		29.841	29.841	1	4326000			17791	6219	10011	10012	22634	22634					-0.02059497081813788
KEEYHLYKD	9	Unmodified	_KEEYHLYKD_					0	0	0		ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.798583984375	2	612.798403	1223.58225	0.21111	0.00012937	0.22335	0.00013687	0.43446	0.00026624	612.7984800355601	51.618	1.0215	51.627	51.321	52.343	0.0095673					108	37	4	0	0	0	0.11201	2	12053	12006;12053		36.506	36.506	1	3943800			17792	6219	10011	10012	22635;22636	22636					-0.02059497081813788
KEFCQLQWA	9	Unmodified	_KEFCQLQWA_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.259765625	2	576.778959	1151.54336	0.25733	0.00014842	-2.9509	-0.001702	-2.6936	-0.0015536	576.7768281454877	32.739	0.40958	32.793	32.603	33.013	0.054371					19	14	2	0	0	0	0.25879	1	6301	6301		2.0598	0	1	120670			17793	2086	10012	10013	22637	22637					-0.02634500917179139
KEFLWVGGTVN	11	Unmodified	_KEFLWVGGTVN_					0	0	0		ENST00000327490.7_1_17:74266610-74266811:+|nuORF	ENST00000327490.7_1_17:74266610-74266811:+|nuORF	ENST00000327490.7_1_17:74266610-74266811:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.84326171875	2	625.332413	1248.65027	-0.018471	-1.155E-05	0.41065	0.00025679	0.39218	0.00024524	625.3327633774957	65.088	0.75377	65.077	64.75	65.504	-0.011337					36	27	2	0	0	0	0.32344	1	16245	16245		14.957	0	1	375990			17794	9422	10013	10014	22638	22638					0.0358937256887657
KEFNKNAEK	9	Unmodified	_KEFNKNAEK_					0	0	0			REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.7775268554688	2	554.293288	1106.57202	0.28763	0.00015943	-0.28211	-0.00015637	0.0055176	3.0584E-06	554.2931872514632	17.525	0.39322	17.525	17.296	17.69	0					28	13	3	0	0	0	0.25843	1	1663	1663		5.7319	0	1	78011	+		17795	16721	10014	10015	22639	22639					0.0229993998361806
KEFQECVECF	10	Unmodified	_KEFQECVECF_					0	0	0		ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.75115966796875	3	421.179108	1260.5155	0.083873	3.5325E-05	0.079712	3.3573E-05	0.16358	6.8898E-05	421.17895468668064	79.919	0.47482	79.89	79.727	80.202	-0.028931					25	16	2	0	0	0	0.31994	1	20722	20722		1.4551	0	1	227120			17796	497	10015	10016	22640	22640					-0.104341919595754
KEFRRNLQK	9	Unmodified	_KEFRRNLQK_					0	0	0		ENST00000452894.5_2_3:23250266-23365013:+|nuORF;ENST00000427371.3_2_3:23250233-23312451:+|nuORF;ENST00000335798.8_2_3:23244714-23574076:+|nuORF	ENST00000452894.5_2_3:23250266-23365013:+|nuORF	ENST00000452894.5_2_3:23250266-23365013:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.9065856933594	3	406.907039	1217.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.37	1	12.273	11.773	12.773	-0.096607								0	0	0	0.26629	1	108	108		0.96228	0.33545	1				17797	9483	10016	10017	22641	22641					0.09914705648452582
KEFYQFPRYWW	11	Unmodified	_KEFYQFPRYWW_					0	0	0			REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1	REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.8501281738281	4	413.202947	1648.78268	-0.14679	-6.0654E-05	-1.1214	-0.00046337	-1.2682	-0.00052402	413.20238623269216	13.998	0.49435	13.932	13.575	14.07	-0.066067					43	16	5	0	0	0	0.33351	1	630	630		0.094841	0.094841	1	158430	+		17798	18901	10017	10018	22642	22642					-0.015756026943563484
KEFYQFPRYWW	11	Unmodified	_KEFYQFPRYWW_					0	0	0			REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1	REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		4	413.202947	1648.78268	-0.35893	-0.00014831	-0.88871	-0.00036722	-1.2476	-0.00051553	413.2025791980412	13.884	0.36353	13.884	13.66	14.024	0	-0.0085142	0.00021542	NaN	0.094841	44	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146260	+		17799	18901	10017	10018							-0.015756026943563484
KEFYQFPRYWW	11	Unmodified	_KEFYQFPRYWW_					0	0	0			REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1	REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		4	413.202947	1648.78268	-0.10083	-4.1662E-05	-1.1037	-0.00045606	-1.2045	-0.00049772	413.2025896384893	13.967	0.67979	13.862	13.658	14.338	-0.10466	-0.030254	-0.00013995	NaN	0.094841	59	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114660	+		17800	18901	10017	10018							-0.015756026943563484
KEGPSYPSYD	10	Unmodified	_KEGPSYPSYD_					0	0	0		ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.3143920898438	2	571.753661	1141.49277	0.16774	9.5906E-05	-0.26238	-0.00015002	-0.094641	-5.4111E-05	571.7536371940041	18.098	0.5098	17.98	17.757	18.267	-0.11739					30	17	3	0	0	0	0.31926	1	1769	1769		5.7319	5.7319	1	66323			17801	821	10018	10019	22643	22643					-0.07231751761173655
KEGQKVLEK	9	Unmodified	_KEGQKVLEK_					0	0	0		ENST00000377618.4_9:39444499-39464431:-|nuORF;nc|ENSG00000274349|Q5TYW1-2|ZNF658;ENSG00000274349|ENST00000621410|ZNF658	ENST00000377618.4_9:39444499-39464431:-|nuORF	ENST00000377618.4_9:39444499-39464431:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.7612915039062	2	529.813856	1057.61316	0.45911	0.00024324	-0.04416	-2.3396E-05	0.41495	0.00021985	529.8136007229016	24.944	0.59035	24.944	24.706	25.296	0					33	20	2	0	0	0	0.24429	1	3938	3938		18.373	3.5348	1	133690			17802	9938	10019	10020	22644	22644					0.0866570102307378
KEGRELKQG	9	Unmodified	_KEGRELKQG_					0	0	0			REV__ENST00000345080.4_3_6:105404937-105405000:+|nuORF	REV__ENST00000345080.4_3_6:105404937-105405000:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3036499023438	2	522.793455	1043.57236	-0.0061312	-3.2053E-06	0.16934	8.8531E-05	0.16321	8.5326E-05	522.7937462011315	12.247	0.15277	12.179	12.1	12.253	-0.06806					7	5	2	0	0	0	0.25706	1	74	74		6.7232	0	1	43299	+		17803	20144	10020	10021	22645	22645					0.05231359703475391
KEHVVGTRC	9	Unmodified	_KEHVVGTRC_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.29345703125	2	514.768926	1027.5233	0.41655	0.00021443	0.14531	7.4804E-05	0.56187	0.00028923	514.7690287293817	21.243	0.79726	21.243	20.883	21.68	0					52	27	3	0	0	0	0.23784	1	2824	2824		19.257	0	1	107450			17804	6599	10021	10022	22646	22646					0.010637481428830142
KEIAPVVEKLN	11	Unmodified	_KEIAPVVEKLN_					0	0	0			REV__ENST00000367203.8_1_1:204082043-204086879:+|nuORF	REV__ENST00000367203.8_1_1:204082043-204086879:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3710327148438	2	620.368995	1238.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.279	1	99.33	98.83	99.83	0.050888								0	0	0	0.37609	1	26565	26565		2.4985	0	1		+		17805	16205	10022	10023	22647	22647					0.11362501291478111
KEIAPVVEKLN	11	Unmodified	_KEIAPVVEKLN_					0	0	0			REV__ENST00000367203.8_1_1:204082043-204086879:+|nuORF	REV__ENST00000367203.8_1_1:204082043-204086879:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3701782226562	2	620.368995	1238.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.396	1	98.389	97.889	98.889	-0.0068283								0	0	0	0.36517	1	26362	26362		4.897	0	1		+		17806	16205	10022	10023	22648	22648					0.11362501291478111
KEIAPVVEKLN	11	Unmodified	_KEIAPVVEKLN_					0	0	0			REV__ENST00000367203.8_1_1:204082043-204086879:+|nuORF	REV__ENST00000367203.8_1_1:204082043-204086879:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3696899414062	2	620.368995	1238.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.504	1	98.497	97.997	98.997	-0.0068283								0	0	0	0.36839	1	26393	26393		4.1895	0	1		+		17807	16205	10022	10023	22649	22649					0.11362501291478111
KEIFEMIEL	9	Unmodified	_KEIFEMIEL_					0	0	0			REV__ENST00000367577.6_2_1:181059693-181059858:+|nuORF	REV__ENST00000367577.6_2_1:181059693-181059858:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.345703125	2	576.304475	1150.5944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.979	1	90.979	90.479	91.479	0								0	0	0	0.24715	1	24139	24139		7.2892	0.56607	1		+		17808	20318	10023	10024	22650	22650					0.025124033370275356
KEIFERRR	8	Unmodified	_KEIFERRR_					0	0	0		nc|ENSG00000001626|P13569-3|CFTR	nc|ENSG00000001626|P13569-3|CFTR	nc|ENSG00000001626|P13569-3|CFTR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3302001953125	2	567.330539	1132.64652	0.26897	0.0001526	-0.44866	-0.00025454	-0.17969	-0.00010194	567.3300574984545	80.382	2.87	80.447	78.587	81.457	0.065102					380	122	5	0	0	0	0.44389	1	21061	21061		7.9102	0.3012	1	6235000			17809	12551	10024	10025	22651	22651					0.08550747585650242
KEILLKIPESI	11	Unmodified	_KEILLKIPESI_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8603515625	2	641.902671	1281.79079	0.42358	0.0002719	-1.4679	-0.00094225	-1.0443	-0.00067035	641.9005836793747	104.59	0.64114	104.59	104.35	105	0.0011444					184	92	3	0	0	0	0.32855	1	27796	27796		7.1017	0	1	493970			17810	2464	10025	10026	22652	22652					0.16116531502416365
KEILWVKKRKC	11	Unmodified	_KEILWVKKRKC_					0	0	0			REV__ENSG00000153246|ENST00000283243|PLA2R1	REV__ENSG00000153246|ENST00000283243|PLA2R1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.96185302734375	3	477.626997	1429.85916	0.25097	0.00011987	0.43164	0.00020616	0.6826	0.00032603	477.62732603175	97.563	0.75349	97.556	97.273	98.027	-0.0068207					211	81	4	0	0	0	0.46704	1	26134	26134		2.4348	0.18206	1	650000	+		17811	16619	10026	10027	22653	22653					0.16142497601254036
KEIPLALHIHK	11	Unmodified	_KEIPLALHIHK_					0	0	0		ENST00000470752.5_1_2:175488218-175494412:-|nuORF	ENST00000470752.5_1_2:175488218-175494412:-|nuORF	ENST00000470752.5_1_2:175488218-175494412:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8984985351562	2	649.900797	1297.78704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.306	1	93.392	92.892	93.892	0.08667								0	0	0	0.32896	1	24844	24844		16.149	9.9433	1				17812	10869	10027	10028	22654	22654					0.15005906519195378
KEIPLALHIHK	11	Unmodified	_KEIPLALHIHK_					0	0	0		ENST00000470752.5_1_2:175488218-175494412:-|nuORF	ENST00000470752.5_1_2:175488218-175494412:-|nuORF	ENST00000470752.5_1_2:175488218-175494412:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8988037109375	2	649.900797	1297.78704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.13	1	93.13	92.63	93.63	0.00046539								0	0	0	0.34539	1	24792	24792		16.149	5.3496	1				17813	10869	10027	10028	22655	22655					0.15005906519195378
KEIPLALHIHK	11	Unmodified	_KEIPLALHIHK_					0	0	0		ENST00000470752.5_1_2:175488218-175494412:-|nuORF	ENST00000470752.5_1_2:175488218-175494412:-|nuORF	ENST00000470752.5_1_2:175488218-175494412:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8983154296875	2	649.900797	1297.78704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.535	1	93.535	93.035	94.035	-0.00051117								0	0	0	0.35732	1	24912	24912		8.1555	5.1603	1				17814	10869	10027	10028	22656	22656					0.15005906519195378
KEIPVDHLI	9	Unmodified	_KEIPVDHLI_					0	0	0		nc|ENSG00000167984|Q7RTR2-3|NLRC3;nc|ENSG00000167984|Q7RTR2-4|NLRC3;ENSG00000167984|ENST00000359128|NLRC3;nc|ENSG00000167984|Q7RTR2-2|NLRC3	nc|ENSG00000167984|Q7RTR2-3|NLRC3	nc|ENSG00000167984|Q7RTR2-3|NLRC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3115234375	2	532.310949	1062.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.978	1	94.065	93.565	94.565	0.08667								0	0	0	0.24715	1	25048	25048		7.2892	0.56607	1				17815	6228	10028	10029	22657	22657					0.07854602511406483
KEIRASSD	8	Unmodified	_KEIRASSD_					0	0	0		ENST00000324262.8_1_18:72188123-72188333:+|nuORF	ENST00000324262.8_1_18:72188123-72188333:+|nuORF	ENST00000324262.8_1_18:72188123-72188333:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.9485168457031	2	453.237981	904.461409	0.1199	5.4343E-05	1.0701	0.00048502	1.19	0.00053936	453.2384327619091	100.17	0.23067	100.16	100.01	100.24	-0.006897					42	31	2	0	0	0	0.34337	1	26789	26789		2.3027	0	1	129080			17816	9400	10029	10030	22658	22658					0.005357199953778036
KEIRKFAMK	9	Unmodified	_KEIRKFAMK_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.84130859375	2	575.841894	1149.66923	0.21142	0.00012175	1.1115	0.00064003	1.3229	0.00076178	575.8423428114145	80.387	2.5277	80.387	78.95	81.478	0					278	106	3	0	0	0	0.28674	2	20980	20814;20980		10.824	1.4408	1	5564600			17817	951	10030	10031	22659;22660	22660					0.10038630658914371
KEIRRHSRR	9	Unmodified	_KEIRRHSRR_					0	0	0			REV__ENST00000403963.5_1_7:14249142-14880939:-|nuORF	REV__ENST00000403963.5_1_7:14249142-14880939:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8717041015625	2	619.371061	1236.72757	0.22815	0.00014131	-1.6546	-0.0010248	-1.4265	-0.00088353	619.370673733844	91.758	1.3518	91.758	91.205	92.557	0					278	100	4	0	0	0	0.34681	1	24491	24491		1.8442	0	1	787150	+		17818	15801	10031	10032	22661	22661					0.11867448348380094
KEITTQITR	9	Unmodified	_KEITTQITR_					0	0	0		ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3171997070312	2	545.316763	1088.61897	0.6091	0.00033216	-0.26726	-0.00014574	0.34184	0.00018641	545.3166247243353	80.334	3.1168	80.308	79.473	82.59	-0.026817					523	123	6	0	0	0	0.29638	1	21369	21369		9.3831	0	1	17985000			17819	721	10032	10033	22662	22662					0.07820799534761136
KEKAKNSKK	9	Unmodified	_KEKAKNSKK_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.8273315429688	2	530.827298	1059.64004	0.081195	4.31E-05	-0.21991	-0.00011673	-0.13872	-7.3634E-05	530.8271177455405	12.718	0.26479	12.618	12.521	12.785	-0.099291					16	8	3	0	0	0	0.32638	1	217	217		4.897	0.141	1	79502			17820	7334	10033	10034	22663	22663					0.11260809634268298
KEKAKNSKK	9	Unmodified	_KEKAKNSKK_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	530.827298	1059.64004	0.14951	7.9362E-05	-0.11399	-6.0508E-05	0.035517	1.8854E-05	530.8270611117239	12.705	0.20132	12.705	12.582	12.783	0	0.043385	2.7962E-05	NaN	4.897	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94734			17821	7334	10033	10034							0.11260809634268298
KEKDEKFIKE	10	Unmodified	_KEKDEKFIKE_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.3565063476562	2	647.356085	1292.69762	0.29928	0.00019374	0.03648	2.3616E-05	0.33576	0.00021736	647.3560626157708	40.914	0.86687	40.914	40.604	41.471	0					104	31	5	0	0	0	0.30013	1	8732	8732		22.775	0	1	4623000	+		17822	20039	10034	10035	22664	22664					0.06297607049168619
KEKDEKFIKE	10	Unmodified	_KEKDEKFIKE_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.3562622070312	2	647.356085	1292.69762	0.50639	0.00032781	-0.14917	-9.6566E-05	0.35722	0.00023125	647.3559315462117	40.653	0.98497	40.746	40.474	41.459	0.09267					113	36	4	0	0	0	0.17257	2	8730	8678;8730		40.725	10.021	1	4834700	+		17823	20039	10034	10035	22665;22666	22666					0.06297607049168619
KEKDEKFIKE	10	Unmodified	_KEKDEKFIKE_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.356201171875	2	647.356085	1292.69762	0.30599	0.00019809	0.014159	9.1658E-06	0.32015	0.00020725	647.3560362060186	40.614	0.94613	40.714	40.427	41.373	0.099407					106	34	5	0	0	0	0.20981	1	8704	8704		41.347	7.1253	1	5396100	+		17824	20039	10034	10035	22667	22667					0.06297607049168619
KEKDEKFIKE	10	Unmodified	_KEKDEKFIKE_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	647.356085	1292.69762	0.29928	0.00019374	0.03648	2.3616E-05	0.33576	0.00021736	647.3560626157708	40.914	0.86687	40.914	40.604	41.471	0	0.12281	7.795E-05	NaN	40.725	104	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4623000	+		17825	20039	10034	10035							0.06297607049168619
KEKDKEKRF	9	Unmodified	_KEKDKEKRF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.23175048828125	3	403.2313	1206.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.593	1	14.593	14.093	15.093	0								0	0	0	0.24919	1	772	772		6.6304	1.2277	1				17826	2631	10035	10036	22668	22668					0.07700177317406087
KEKEKVTR	8	Unmodified	_KEKEKVTR_					0	0	0		nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12	nc|ENSG00000126464|Q9ULL5-2|PRR12	nc|ENSG00000126464|Q9ULL5-2|PRR12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3060607910156	2	509.306198	1016.59784	-0.036634	-1.8658E-05	0.40519	0.00020637	0.36856	0.00018771	509.30633722323654	12.179	0.31372	12.179	12.018	12.332	0					30	12	5	0	0	0	0.41709	1	44	44		17.113	0	1	195930			17827	3274	10036	10037	22669	22669					0.09020834225907493
KEKKDKRLP	9	Unmodified	_KEKKDKRLP_					0	0	0			REV__nc|ENSG00000084093|Q13127-4|REST	REV__nc|ENSG00000084093|Q13127-4|REST	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8278198242188	2	571.356222	1140.69789	0.076389	4.3645E-05	1.0821	0.00061825	1.1585	0.0006619	571.3565759813118	12.448	0.19978	12.352	12.236	12.436	-0.096607					9	6	2	0	0	0	0.26168	1	143	143		1.8442	0	1	14774	+		17828	13944	10037	10038	22670	22670					0.13317071559686156
KEKKDKRLP	9	Unmodified	_KEKKDKRLP_					0	0	0			REV__nc|ENSG00000084093|Q13127-4|REST	REV__nc|ENSG00000084093|Q13127-4|REST	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	571.356222	1140.69789	-0.19317	-0.00011037	0.42535	0.00024302	0.23218	0.00013266	571.3563930541494	12.458	0.20961	12.39	12.281	12.491	-0.06806	0.004903	-3.0022E-05	NaN	1.8442	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16875	+		17829	13944	10037	10038							0.13317071559686156
KEKLLEKF	8	Unmodified	_KEKLLEKF_					0	0	0			REV__nc|ENSG00000196504|O75400-2|PRPF40A	REV__nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.76416015625	2	517.815867	1033.61718	0.44443	0.00023013	-0.37605	-0.00019473	0.068378	3.5407E-05	518.3152856309247	72.066	0.16695	72.066	71.937	72.104	0					7	5	2	0	0	0	0.34198	1	18318	18318		6.7232	0	1	49260	+		17830	18657	10038	10039	22671	22671					0.10171790516801593
KEKLYVIQ	8	Unmodified	_KEKLYVIQ_					0	0	0			REV__ENST00000477250.1_1_13:36855391-36871856:-|nuORF	REV__ENST00000477250.1_1_13:36855391-36871856:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2671203613281	2	510.808042	1019.60153	0.14261	7.2847E-05	0.36387	0.00018587	0.50648	0.00025872	510.80789729489476	41.243	0.40189	41.243	41.039	41.441	0					23	14	2	0	0	0	0.33993	1	8904	8904		16.942	0	1	198030	+		17831	19187	10039	10040	22672	22672					0.09251503999769284
KEKLYVIQ	8	Unmodified	_KEKLYVIQ_					0	0	0			REV__ENST00000477250.1_1_13:36855391-36871856:-|nuORF	REV__ENST00000477250.1_1_13:36855391-36871856:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.26702880859375	2	510.808042	1019.60153	0.23216	0.00011859	1.0146	0.00051828	1.2468	0.00063687	511.31032941280114	41.082	0.52637	41.172	40.876	41.403	0.090252					30	19	2	0	0	0	0.33993	1	8836	8836		16.942	0	1	309330	+		17832	19187	10039	10040	22673	22673					0.09251503999769284
KEKNIENSSTL	11	Unmodified	_KEKNIENSSTL_					0	0	0			REV__ENSG00000213079|ENST00000367178|SCAF8	REV__ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5576477050781	3	421.557741	1261.6514	-0.31401	-0.00013237	-0.032702	-1.3786E-05	-0.34671	-0.00014616	421.55771111065536	13.829	0.60442	13.763	13.602	14.206	-0.066068					57	20	4	0	0	0	0.47713	1	591	591		1.1098	0.33322	1	425400	+		17833	19033	10040	10041	22674	22674					0.0310354214709605
KEKPIVKPK	9	Unmodified	_KEKPIVKPK_					0	0	0		ENSG00000111615|ENST00000229214|KRR1;nc|ENSG00000111615|Q13601-2|KRR1	ENSG00000111615|ENST00000229214|KRR1	ENSG00000111615|ENST00000229214|KRR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.8218383789062	2	533.852784	1065.69102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.102	1	12.034	11.534	12.534	-0.06806								0	0	0	0.25858	1	26	26		3.5965	0.60125	1				17834	2371	10041	10042	22675	22675					0.1607975867912046
KEKQLFKK	8	Unmodified	_KEKQLFKK_					0	0	0		ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8294067382812	2	524.829309	1047.64407	0.26956	0.00014147	-0.020165	-1.0583E-05	0.2494	0.00013089	524.8292303226266	25.253	0.62531	25.197	24.888	25.514	-0.055931					48	21	3	0	0	0	0.12475	1	3971	3971		56.177	4.5472	1	339980			17835	5050	10042	10043	22676	22676					0.12214899127980061
KEKRLEEKLM	10	Unmodified	_KEKRLEEKLM_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-4|BDP1	REV__nc|ENSG00000145734|A6H8Y1-4|BDP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.5712890625	3	435.251595	1302.73296	-0.20788	-9.0481E-05	-1.1473	-0.00049935	-1.3551	-0.00058983	435.2507277329441	19.642	0.55484	19.642	19.294	19.849	0					57	19	4	0	0	0	0.32068	1	2260	2260		3.5871	0.26742	1	191090	+		17836	13127	10043	10044	22677	22677					0.09369946305332633
KEKSEVKP	8	Unmodified	_KEKSEVKP_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7742614746094	2	472.7742	943.533846	-0.0060867	-2.8776E-06	0.40639	0.00019213	0.40031	0.00018925	472.77421661719205	16.336	0.66559	16.222	15.838	16.503	-0.11434					58	22	4	0	0	0	0.44885	1	1354	1354		6.2058	0	1	238480	+		17837	15528	10044	10045	22678	22678					0.05982054068954312
KEKTKLNF	8	Unmodified	_KEKTKLNF_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7543640136719	2	504.297842	1006.58113	0.53406	0.00026932	-0.16635	-8.3889E-05	0.36771	0.00018544	504.29790269463814	20.024	0.3313	19.969	19.788	20.119	-0.055693					23	11	3	0	0	0	0.34247	1	2432	2432		8.5933	1.8701	1	49174	+		17838	18519	10045	10046	22679	22679					0.0781033333993264
KEKTVQDLKQ	10	Unmodified	_KEKTVQDLKQ_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8475341796875	2	608.848427	1215.6823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.224	1	81.2	80.7	81.7	-0.02404								0	0	0	0.36711	1	21131	21131		7.609	0.50723	1				17839	3288	10046	10047	22680	22680					0.08308740251982272
KELAKEKR	8	Unmodified	_KELAKEKR_					0	0	0			REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.290771484375	2	501.308741	1000.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.676	1	13.676	13.176	14.176	0								0	0	0	0.3229	1	496	496		25.399	2.2509	1		+		17840	17022	10047	10048	22681	22681					0.10265138088516323
KELAMVLLHAI	11	Unmodified	_KELAMVLLHAI_					0	0	0			REV__ME3|p.V396Sfs*8|1|0.05|ENSG00000151376|chr11:86448202-86448202|T/-|frameshift_variant	REV__ME3|p.V396Sfs*8|1|0.05|ENSG00000151376|chr11:86448202-86448202|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8706665039062	2	619.370484	1236.72641	0.22815	0.00014131	-0.72266	-0.00044759	-0.49451	-0.00030628	619.370673733844	91.758	1.3518	91.758	91.205	92.557	0					278	100	4	0	0	0	0.46655	1	24323	24323		2.4985	0	1	787150	+		17841	16537	10048	10049	22682	22682					0.11752053144664387
KELDNYREGY	10	Unmodified	_KELDNYREGY_					0	0	0			REV__ENSG00000137628|ENST00000393743|DDX60	REV__ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	643.8043823242188	2	643.804217	1285.59388	0.051437	3.3115E-05	0.25752	0.00016579	0.30896	0.00019891	643.8044926252211	12.363	0.22301	12.363	12.245	12.468	0					16	6	3	0	0	0	0.38773	1	112	112		5.7319	1.4026	1	54893	+		17842	15874	10049	10050	22683	22683					-0.037493000584845504
KELEKMTNR	9	Unmodified	_KELEKMTNR_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.8222045898438	2	574.808248	1147.60194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.793	1	13.727	13.227	14.227	-0.066068								0	0	0	0.25858	1	530	530		3.5965	1.7523	1				17843	2162	10050	10051	22684	22684					0.03404555657311903
KELEQISKGSL	11	Unmodified	_KELEQISKGSL_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.23480224609375	3	411.234599	1230.68197	0.22554	9.2748E-05	0.43395	0.00017845	0.65948	0.0002712	411.2347513974946	38.238	0.74688	38.328	38.011	38.758	0.090881					71	26	4	0	0	0	0.35173	1	7991	7991		17.572	17.572	1	1475500	+		17844	13863	10051	10052	22685	22685					0.07585320532166406
KELERVIG	8	Unmodified	_KELERVIG_					0	0	0		ENST00000299353.6_1_10:104622682-104660454:+|nuORF;ENSG00000214435|ENST00000369880|AS3MT;nc|ENSG00000214435|Q9HBK9-2|AS3MT	ENST00000299353.6_1_10:104622682-104660454:+|nuORF	ENST00000299353.6_1_10:104622682-104660454:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2836608886719	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.56	1	92.649	92.149	93.149	0.089195								0	0	0	0.36486	1	24619	24619		7.9102	0	1				17845	8385	10052	10053	22686	22686					0.07625760305870699
KELERVIG	8	Unmodified	_KELERVIG_					0	0	0		ENST00000299353.6_1_10:104622682-104660454:+|nuORF;ENSG00000214435|ENST00000369880|AS3MT;nc|ENSG00000214435|Q9HBK9-2|AS3MT	ENST00000299353.6_1_10:104622682-104660454:+|nuORF	ENST00000299353.6_1_10:104622682-104660454:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2834777832031	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.82	1	92.909	92.409	93.409	0.089195								0	0	0	0.36486	1	24700	24700		7.9102	0	1				17846	8385	10052	10053	22687	22687					0.07625760305870699
KELETLLDAKQ	11	Unmodified	_KELETLLDAKQ_					0	0	0		ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF	ENSG00000154451|ENST00000370459|GBP5	ENSG00000154451|ENST00000370459|GBP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.361328125	2	644.361367	1286.70818	0.98149	0.00063243	-0.56791	-0.00036594	0.41357	0.00026649	644.3610009373722	55.939	0.39064	55.939	55.658	56.049	0					31	13	3	0	0	0	0.0083345	1	13395	13395		73.196	6.1155	1	702410			17847	5130	10053	10054	22688	22688					0.0762958970362888
KELETLLDAKQ	11	Unmodified	_KELETLLDAKQ_					0	0	0		ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF	ENSG00000154451|ENST00000370459|GBP5	ENSG00000154451|ENST00000370459|GBP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.863037109375	2	644.361367	1286.70818	0.79879	0.00051471	-0.36977	-0.00023827	0.42902	0.00027644	644.3610740360198	55.808	0.48473	55.878	55.592	56.077	0.070885					33	17	3	0	0	0	0.012242	1	13366	13366		64.927	5.8743	1	760120			17848	5130	10053	10054	22689	22689					0.0762958970362888
KELETLLDAKQ	11	Unmodified	_KELETLLDAKQ_					0	0	0		ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF	ENSG00000154451|ENST00000370459|GBP5	ENSG00000154451|ENST00000370459|GBP5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	644.361367	1286.70818	0.96545	0.0006221	-0.51639	-0.00033274	0.44906	0.00028936	644.8624857446079	56.241	0.41321	56.222	55.884	56.297	-0.019081	0.20895	-6.1944E-05	NaN	73.196	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1261700			17849	5130	10053	10054							0.0762958970362888
KELIEKVYSL	10	Unmodified	_KELIEKVYSL_					0	0	0			REV__VPS41|p.S291L|1|0.26|ENSG00000006715|chr7:38776689-38776689|G/A|missense_variant	REV__VPS41|p.S291L|1|0.26|ENSG00000006715|chr7:38776689-38776689|G/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.365234375	2	611.358096	1220.70164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.424	1	86.508	86.008	87.008	0.084251								0	0	0	0.35788	1	22738	22738		11.495	3.3392	1		+		17850	23355	10054	10055	22690	22690					0.1001169654291516
KELIEKVYSL	10	Unmodified	_KELIEKVYSL_					0	0	0			REV__VPS41|p.S291L|1|0.26|ENSG00000006715|chr7:38776689-38776689|G/A|missense_variant	REV__VPS41|p.S291L|1|0.26|ENSG00000006715|chr7:38776689-38776689|G/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.3578491210938	2	611.358096	1220.70164	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.528	1	86.612	86.112	87.112	0.084251								0	0	0	0.36441	1	22770	22770		8.7454	0	1		+		17851	23355	10054	10055	22691	22691					0.1001169654291516
KELKATKK	8	Unmodified	_KELKATKK_					0	0	0		ENST00000539855.5_1_11:95532492-95564417:+|nuORF;nc|ENSG00000166037|Q86XR8-2|CEP57;nc|ENSG00000166037|Q86XR8-4|CEP57;nc|ENSG00000166037|Q86XR8-5|CEP57;ENSG00000166037|ENST00000325542|CEP57	ENST00000539855.5_1_11:95532492-95564417:+|nuORF	ENST00000539855.5_1_11:95532492-95564417:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.2992858886719	2	473.30821	944.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.41	1	101.43	100.93	101.93	0.027206								0	0	0	0.37078	1	27047	27047		5.2307	2.6532	1				17852	6025	10055	10056	22692	22692					0.1273492371959719
KELKNKLQKH	10	Unmodified	_KELKNKLQKH_					0	0	0			REV__ENSG00000142185|ENST00000397928|TRPM2	REV__ENSG00000142185|ENST00000397928|TRPM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3858642578125	2	633.388054	1264.76155	-0.060202	-3.8131E-05	-0.19473	-0.00012334	-0.25494	-0.00016147	633.8903085259533	104.58	0.56749	104.58	104.34	104.91	0					120	79	2	0	0	0	0.41025	1	27780	27780		1.3295	0	1	156630	+		17853	16105	10056	10057	22693	22693					0.13976431996775318
KELKRRREP	9	Unmodified	_KELKRRREP_					0	0	0			REV__ENSG00000132518|ENST00000254854|GUCY2D	REV__ENSG00000132518|ENST00000254854|GUCY2D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3695068359375	2	606.370195	1210.72584	0.48112	0.00029173	-1.0849	-0.00065783	-0.60375	-0.0003661	606.3694883948359	92.039	0.87209	92.13	91.893	92.766	0.090675					93	57	2	0	0	0	0.35395	1	24455	24455		1.4819	1.1313	1	176020	+		17854	15576	10057	10058	22694	22694					0.12890394539772387
KELKRRREP	9	Unmodified	_KELKRRREP_					0	0	0			REV__ENSG00000132518|ENST00000254854|GUCY2D	REV__ENSG00000132518|ENST00000254854|GUCY2D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	606.370195	1210.72584	0.41929	0.00025424	-0.99214	-0.0006016	-0.57285	-0.00034736	606.3695410395688	92.231	0.18262	92.231	92.108	92.291	0	0.050761	8.7293E-05	NaN	1.4819	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63952	+		17855	15576	10057	10058							0.12890394539772387
KELMIAGRLF	10	Unmodified	_KELMIAGRLF_					0	0	0		nc|ENSG00000100170|P13866-2|SLC5A1;ENSG00000100170|ENST00000266088|SLC5A1	nc|ENSG00000100170|P13866-2|SLC5A1	nc|ENSG00000100170|P13866-2|SLC5A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3428344726562	2	589.341726	1176.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.961	1	91.052	90.552	91.552	0.090668								0	0	0	0.3629	1	24123	24123		9.3831	2.66	1				17856	1541	10058	10059	22695	22695					0.0876321093903698
KELMIAGRLF	10	Unmodified	_KELMIAGRLF_					0	0	0		nc|ENSG00000100170|P13866-2|SLC5A1;ENSG00000100170|ENST00000266088|SLC5A1	nc|ENSG00000100170|P13866-2|SLC5A1	nc|ENSG00000100170|P13866-2|SLC5A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3406982421875	2	589.341726	1176.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.743	1	80.717	80.217	81.217	-0.026825								0	0	0	0.37157	1	20983	20983		5.7319	2.1354	1				17857	1541	10058	10059	22696	22696					0.0876321093903698
KELMIAGRLF	10	Unmodified	_KELMIAGRLF_					0	0	0		nc|ENSG00000100170|P13866-2|SLC5A1;ENSG00000100170|ENST00000266088|SLC5A1	nc|ENSG00000100170|P13866-2|SLC5A1	nc|ENSG00000100170|P13866-2|SLC5A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.34375	2	589.341726	1176.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.821	1	80.794	80.294	81.294	-0.026825								0	0	0	0.37157	1	21007	21007		5.7319	2.1354	1				17858	1541	10058	10059	22697	22697					0.0876321093903698
KELMKRRKE	9	Unmodified	_KELMKRRKE_					0	0	0		ENSG00000065613|ENST00000369755|SLK	ENSG00000065613|ENST00000369755|SLK	ENSG00000065613|ENST00000369755|SLK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2323303222656	3	406.576413	1216.70741	-0.42748	-0.0001738	0.018931	7.697E-06	-0.40854	-0.0001661	406.5764641415779	13.296	0.61263	13.228	13.073	13.686	-0.067495					52	21	4	0	0	0	0.33018	1	352	352		2.4985	0	1	498400			17859	820	10059	10060	22698	22698					0.10772516573570101
KELNKRLT	8	Unmodified	_KELNKRLT_					0	0	0		ENSG00000187736|ENST00000356853|NHEJ1;nc|ENSG00000187736|Q9H9Q4-2|NHEJ1	ENSG00000187736|ENST00000356853|NHEJ1	ENSG00000187736|ENST00000356853|NHEJ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.634521484375	2	501.308741	1000.60293	0.18028	9.0375E-05	0.43934	0.00022025	0.61962	0.00031062	501.3088210607484	94.656	0.698	94.656	94.337	95.035	0					112	63	2	0	0	0	0.3408	1	25305	25305		6.2058	0.47393	1	519640			17860	7705	10060	10061	22699	22699					0.10265138088493586
KELNLTVST	9	Unmodified	_KELNLTVST_					0	0	0			REV__ENSG00000186105|ENST00000334994|LRRC70	REV__ENSG00000186105|ENST00000334994|LRRC70	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.8143310546875	2	502.784764	1003.55498	0.39405	0.00019812	0.70039	0.00035215	1.0944	0.00055027	503.2855930018735	87.879	1.5089	87.968	87.216	88.724	0.089195					100	74	2	0	0	0	0.24688	1	23001	23001		10.074	0.6908	1	122020	+		17861	18429	10061	10062	22700	22700					0.053340193778240064
KELNQLDKS	9	Unmodified	_KELNQLDKS_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.80126953125	2	537.793121	1073.57169	0.14321	7.7019E-05	-3.496	-0.0018801	-3.3528	-0.0018031	537.7913046257602	13.907	0.38181	13.841	13.716	14.098	-0.066068					20	12	2	0	0	0	0.21538	1	544	544		26.268	3.5319	1	67774	+		17862	18293	10062	10063	22701	22701					0.037845202637299735
KELNQLDKS	9	Unmodified	_KELNQLDKS_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	537.793121	1073.57169	0.15849	8.5235E-05	-3.9088	-0.0021021	-3.7503	-0.0020169	537.7909296240665	13.827	0.36353	13.827	13.66	14.024	0	-0.0069369	-0.0001044	NaN	26.268	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56895	+		17863	18293	10062	10063							0.037845202637299735
KELPKANKQ	9	Unmodified	_KELPKANKQ_					0	0	0		ENSG00000128908|ENST00000648947|INO80;INO80|p.L861Sfs*29|1|0.04|ENSG00000128908|chr15:41048271-41048272|-/TTTATAAAATCTTGATAAG|frameshift_variant	ENSG00000128908|ENST00000648947|INO80	ENSG00000128908|ENST00000648947|INO80	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2755126953125	2	528.314023	1054.61349	0.42567	0.00022489	-2.9434	-0.001555	-2.5177	-0.0013301	528.3146242936034	46.364	0.082375	46.421	46.362	46.444	0.05616					4	2	2	0	0	0	0.24913	1	10439	10439		12.532	0.89125	1	53717			17864	3398	10063	10064	22702	22702					0.08837120742941806
KELPNSPK	8	Unmodified	_KELPNSPK_					0	0	0			REV__nc|ENSG00000100614|P35813-2|PPM1A	REV__nc|ENSG00000100614|P35813-2|PPM1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7486267089844	2	456.761092	911.507631	0.051804	2.3662E-05	-0.6582	-0.00030064	-0.60639	-0.00027698	456.76066432525374	17.675	0.47128	17.675	17.396	17.867	0					19	15	2	0	0	0	0.44734	1	1698	1698		6.7232	0.51738	1	29345	+		17865	14215	10064	10065	22703	22703					0.04833784897482474
KELPNSPK	8	Unmodified	_KELPNSPK_					0	0	0			REV__nc|ENSG00000100614|P35813-2|PPM1A	REV__nc|ENSG00000100614|P35813-2|PPM1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.74853515625	2	456.761092	911.507631	-0.045643	-2.0848E-05	-0.83001	-0.00037912	-0.87565	-0.00039996	456.76075643391107	17.893	0.46849	17.776	17.489	17.957	-0.11739					25	15	2	0	0	0	0.42642	1	1717	1717		13.906	0.86358	1	32928	+		17866	14215	10064	10065	22704	22704					0.04833784897482474
KELPNSPK	8	Unmodified	_KELPNSPK_					0	0	0			REV__nc|ENSG00000100614|P35813-2|PPM1A	REV__nc|ENSG00000100614|P35813-2|PPM1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.748291015625	2	456.761092	911.507631	0.046693	2.1328E-05	-1.5254	-0.00069672	-1.4787	-0.00067539	456.7606411207657	17.74	0.45273	17.679	17.472	17.925	-0.060429					25	15	2	0	0	0	0.44734	1	1770	1770		6.7232	0.51738	1	14652	+		17867	14215	10064	10065	22705	22705					0.04833784897482474
KELQVQKAQ	9	Unmodified	_KELQVQKAQ_					0	0	0		ENST00000398427.6_1_11:73946953-73950218:+|nuORF	ENST00000398427.6_1_11:73946953-73950218:+|nuORF	ENST00000398427.6_1_11:73946953-73950218:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.3118896484375	2	536.31148	1070.60841	0.63534	0.00034074	-0.024474	-1.3126E-05	0.61086	0.00032761	536.3111455655578	88.104	1.2631	88.104	87.439	88.702	0					138	63	5	0	0	0	0.31763	1	23334	23334		6.2058	0	1	870810			17868	10164	10065	10066	22706	22706					0.07592816880310238
KELRDRCVND	10	Unmodified	_KELRDRCVND_					0	0	0			REV__ENSG00000086200|ENST00000325324|IPO11	REV__ENSG00000086200|ENST00000325324|IPO11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.0316162109375	2	624.311686	1246.60882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.377	1	94.459	93.959	94.959	0.082779								0	0	0	0.37807	1	25171	25171		2.9952	0	1		+		17869	13974	10066	10067	22707	22707					-0.0046213146213176515
KELRDRCVND	10	Unmodified	_KELRDRCVND_					0	0	0			REV__ENSG00000086200|ENST00000325324|IPO11	REV__ENSG00000086200|ENST00000325324|IPO11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3114013671875	2	624.311686	1246.60882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.161	1	85.149	84.649	85.649	-0.01284								0	0	0	0.37355	1	22344	22344		4.897	1.6157	1		+		17870	13974	10066	10067	22708	22708					-0.0046213146213176515
KELRGRAHAL	10	Unmodified	_KELRGRAHAL_					0	0	0			REV__nc|ENSG00000149823|Q9UID3-2|VPS51	REV__nc|ENSG00000149823|Q9UID3-2|VPS51	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8432006835938	2	575.843813	1149.67307	0.34092	0.00019632	-0.65546	-0.00037744	-0.31454	-0.00018113	575.8429317162594	94.274	1.1656	94.272	93.782	94.948	-0.0020142					211	95	3	0	0	0	0.38773	1	25119	25119		5.7319	0	1	534500	+		17871	16485	10067	10068	22709	22709					0.10422436476983421
KELRKELELQK	11	Unmodified	_KELRKELELQK_					0	0	0			REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.9517822265625	3	471.952314	1412.83511	-0.23423	-0.00011055	-0.65684	-0.00031	-0.89108	-0.00042055	471.952026984187	97.58	0.84684	97.58	97.268	98.115	0					304	91	5	0	0	0	0.47713	2	26074	26074;26110		1.1098	0	1	974270	+		17872	18821	10068	10069	22710;22711	22710					0.14520935648579325
KELRKELELQK	11	Unmodified	_KELRKELELQK_					0	0	0			REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.951904296875	3	471.952314	1412.83511	0.0099546	4.6981E-06	-0.71146	-0.00033577	-0.7015	-0.00033108	471.95190190332465	97.549	0.76205	97.611	97.218	97.98	0.061516					284	85	5	0	0	0	0.46704	3	26117	26046;26086;26117		2.4348	0	1	626880	+		17873	18821	10068	10069	22712;22713;22714	22714					0.14520935648579325
KELRKELELQK	11	Unmodified	_KELRKELELQK_					0	0	0			REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	471.952314	1412.83511	0.0099546	4.6981E-06	-0.71146	-0.00033577	-0.7015	-0.00033108	471.95190190332465	97.549	0.76205	97.611	97.218	97.98	0.061516	0.026414	3.6776E-05	NaN	2.4348	284	85	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	626880	+		17874	18821	10068	10069							0.14520935648579325
KELRKELELQK	11	Unmodified	_KELRKELELQK_					0	0	0			REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	471.952314	1412.83511	0.22557	0.00010646	-0.96778	-0.00045675	-0.74221	-0.00035029	471.95181525904115	97.569	0.8069	97.562	97.22	98.027	-0.0068207	-0.021935	-0.00032614	NaN	2.4348	251	85	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	838030	+		17875	18821	10068	10069							0.14520935648579325
KELRKELMKRR	11	Unmodified	_KELRKELMKRR_					0	0	0		ENSG00000065613|ENST00000369755|SLK	ENSG00000065613|ENST00000369755|SLK	ENSG00000065613|ENST00000369755|SLK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.5884094238281	3	496.304805	1485.89259	0.48783	0.00024211	-2.4759	-0.0012288	-1.9881	-0.00098669	496.63800529891216	28.978	0.35128	28.978	28.791	29.142	0					14	12	2	0	0	0	0.33263	1	5115	5115		3.8459	0	1	122300			17876	820	10069	10070	22715	22715					0.1690749937313285
KELRKSRFN	9	Unmodified	_KELRKSRFN_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|68|2|sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|68|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3435668945312	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.6	1	117.6	117.1	118.1	0								0	0	0	0.2646	1	30407	30407		1.6526	0.17072	1		+		17877	22753	10070	10071	22716	22716					0.09147016757151505
KELRYILQ	8	Unmodified	_KELRYILQ_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7684936523438	2	531.818941	1061.62333	0.24311	0.00012929	-1.4706	-0.0007821	-1.2275	-0.00065281	531.8171057829162	96.097	0.051216	96.175	96.136	96.187	0.077415					6	4	2	0	0	0	0.34294	1	25685	25685		7.2892	2.5332	1	68112	+		17878	16784	10071	10072	22717	22717					0.09498308748334239
KELSAKSKDK	10	Unmodified	_KELSAKSKDK_					0	0	0			REV__SLC16A1|p.N250Kfs*36|1|0.16|ENSG00000155380|chr1:112917656-112917657|-/T|frameshift_variant	REV__SLC16A1|p.N250Kfs*36|1|0.16|ENSG00000155380|chr1:112917656-112917657|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3300170898438	2	567.32987	1132.64519	0.53041	0.00030092	-0.1327	-7.5283E-05	0.39771	0.00022563	567.3295912990676	85.123	3.55	85.204	84.935	88.485	0.080887					292	155	4	0	0	0	0.38027	1	22337	22337		7.1017	7.1017	1	2433000	+		17879	16696	10072	10073	22718	22718					0.08417068706239661
KELSAKSKDK	10	Unmodified	_KELSAKSKDK_					0	0	0			REV__SLC16A1|p.N250Kfs*36|1|0.16|ENSG00000155380|chr1:112917656-112917657|-/T|frameshift_variant	REV__SLC16A1|p.N250Kfs*36|1|0.16|ENSG00000155380|chr1:112917656-112917657|-/T|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	567.32987	1132.64519	0.46314	0.00026276	0.054112	3.07E-05	0.51726	0.00029346	567.3297042377662	85.265	2.4192	85.265	84.437	86.857	0	0.026885	0.00012065	NaN	7.1017	205	93	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1667400	+		17880	16696	10072	10073							0.08417068706239661
KELSAKSKDK	10	Unmodified	_KELSAKSKDK_					0	0	0			REV__SLC16A1|p.N250Kfs*36|1|0.16|ENSG00000155380|chr1:112917656-112917657|-/T|frameshift_variant	REV__SLC16A1|p.N250Kfs*36|1|0.16|ENSG00000155380|chr1:112917656-112917657|-/T|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	567.32987	1132.64519	0.4657	0.0002642	-0.029773	-1.6891E-05	0.43593	0.00024731	567.3296226278562	85.257	1.8978	85.244	84.941	86.839	-0.01284	0.0067427	2.5472E-05	NaN	7.1017	170	73	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1737500	+		17881	16696	10072	10073							0.08417068706239661
KELSLPRRGR	10	Unmodified	_KELSLPRRGR_					0	0	0		nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3	nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000099308|O60307|MAST3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3705444335938	2	606.370195	1210.72584	0.45985	0.00027884	-0.18945	-0.00011488	0.2704	0.00016396	606.3699776312902	86.955	2.1455	86.949	86.188	88.334	-0.0056229					252	99	4	0	0	0	0.38952	1	22746	22746		5.7319	0.43497	1	1359200			17882	1482	10073	10074	22719	22719					0.12890394539772387
KELSTKKD	8	Unmodified	_KELSTKKD_					0	0	0		nc|ENSG00000197841|Q2M3W8-2|ZNF181;nc|ENSG00000197841|Q2M3W8-3|ZNF181;ENSG00000197841|ENST00000492450|ZNF181;ZNF181|p.R361Mfs*18|1|0.07|ENSG00000197841|chr19:34741462-34741463|-/T|frameshift_variant;ENSG00000089335|ENST00000505242|ZNF302;ENST00000509196.1_1_19:35173669-35176139:+|nuORF;ZNF181|p.S362Ffs*51|1|0.07|ENSG00000197841|chr19:34741464-34741465|-/TT|frameshift_variant	nc|ENSG00000197841|Q2M3W8-2|ZNF181	nc|ENSG00000197841|Q2M3W8-2|ZNF181	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.77154541015625	2	474.771657	947.528761	-0.067285	-3.1945E-05	-0.52148	-0.00024758	-0.58876	-0.00027953	474.7714557534536	14.896	0.59318	14.831	14.564	15.158	-0.064413					46	20	3	0	0	0	0.44734	1	921	921		6.7232	0	1	452510			17883	8003	10074	10075	22720	22720					0.05289750206316057
KELTMHEKR	9	Unmodified	_KELTMHEKR_					0	0	0			REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8136596679688	2	586.31624	1170.61793	0.29993	0.00017585	-0.31163	-0.00018271	-0.0117	-6.8597E-06	586.3151256949171	111.95	0.78079	111.96	111.71	112.49	0.0131					141	94	2	0	0	0	0.25988	1	29195	29195		3.9444	2.1002	1	100670	+		17884	15495	10075	10076	22721	22721					0.039442618941848195
KELTPPAPLGK	11	Unmodified	_KELTPPAPLGK_					0	0	0			REV__ATXN7|p.T393Pfs*6|1|0.3|ENSG00000163635|chr3:63988137-63988137|A/-|frameshift_variant	REV__ATXN7|p.T393Pfs*6|1|0.3|ENSG00000163635|chr3:63988137-63988137|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.84326171875	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.339	1	79.339	78.839	79.839	0								0	0	0	0.35514	1	20569	20569		7.1017	0.37856	1		+		17885	13120	10076	10077	22722	22722					0.10690847091291289
KELYGSAPQ	9	Unmodified	_KELYGSAPQ_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.77435302734375	2	496.756007	991.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.386	1	29.399	28.899	29.899	0.012266								0	0	0	0.21353	1	5252	5252		18.146	1.2041	1		+		17886	18238	10077	10078	22723	22723					0.001371771722460835
KEMDTLQNHI	10	Unmodified	_KEMDTLQNHI_					0	0	0			REV__ENSG00000109775|ENST00000264689|UFSP2	REV__ENSG00000109775|ENST00000264689|UFSP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.8846130371094	3	410.204534	1227.59177	-0.017888	-7.3377E-06	-1.1864	-0.00048669	-1.2043	-0.00049402	410.2041645611431	20.346	0.44283	20.346	20.207	20.65	0					42	15	4	0	0	0	0.40085	1	2572	2572		3.3196	0.47636	1	68852	+		17887	14653	10078	10079	22724	22724					-0.012920520679472247
KEMFIQCQAMF	11	Unmodified	_KEMFIQCQAMF_					0	0	0			REV__nc|ENSG00000242265|Q86TG7|PEG10	REV__nc|ENSG00000242265|Q86TG7|PEG10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.77655029296875	3	459.211755	1374.61344	0.24197	0.00011112	-0.17467	-8.021E-05	0.0673	3.0905E-05	459.2117012260779	33.655	1.2172	33.655	33.119	34.336	0					92	43	3	0	0	0	0.3325	1	6587	6587		2.2527	0	1	272070	+		17888	19182	10079	10080	22725	22725					-0.05888706635255403
KEMSKRKHK	9	Unmodified	_KEMSKRKHK_					0	0	0		ENSG00000205857|ENST00000382119|NANOGNB	ENSG00000205857|ENST00000382119|NANOGNB	ENSG00000205857|ENST00000382119|NANOGNB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8077392578125	2	586.340049	1170.66555	0.28838	0.00016909	-3.3274	-0.001951	-3.039	-0.0017819	586.3374145613445	31.176	0.40245	31.217	31.016	31.419	0.040991					18	14	2	0	0	0	0.25431	1	5802	5802		9.3831	2.66	1	197650			17889	8306	10080	10081	22726	22726					0.08703960885054585
KENPVLPKG	9	Unmodified	_KENPVLPKG_					0	0	0			REV__nc|ENSG00000204305|Q15109-8|AGER	REV__nc|ENSG00000204305|Q15109-8|AGER	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.21881103515625	2	491.290017	980.565481	0.024887	1.2227E-05	0.76478	0.00037573	0.78966	0.00038795	491.29020105489366	14.873	0.55681	14.808	14.456	15.013	-0.064413					31	19	2	0	0	0	0.26168	1	804	804		1.8442	0.36234	1	230350	+		17890	18932	10081	10082	22727	22727					0.07442046822893644
KENSTIFNSIK	11	Unmodified	_KENSTIFNSIK_					0	0	0		L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|17|1|sense	L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|17|1|sense	L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|17|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.846435546875	2	640.845884	1279.67722	0.6354	0.00040719	-0.26825	-0.00017191	0.36715	0.00023529	640.8456932392189	35.838	0.41071	35.924	35.73	36.14	0.08625					33	14	3	0	0	0	0.24435	1	7205	7205		27.223	0	1	345220			17891	12467	10082	10083	22728	22728					0.0485643638937745
KENTYTRYLD	10	Unmodified	_KENTYTRYLD_					0	0	0		ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENST00000420752.1_1_10:50980319-50981214:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.88214111328125	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.313	1	17.313	16.813	17.813	0								0	0	0	0.38196	1	1592	1592		0.77653	0.078866	1				17892	10363	10083	10084	22729	22729					-0.013567270243811436
KENVKYAVR	9	Unmodified	_KENVKYAVR_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.K2432Nfs*23|1|0.23|ENSG00000005810|chr13:77140155-77140155|T/-|frameshift_variant;MYCBP2|p.E3042Vfs*11|1|0.09|ENSG00000005810|chr13:77097915-77097916|-/GGGAAGA|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3406372070312	2	553.819473	1105.62439	0.12233	6.7751E-05	3.3556	0.0018584	3.4779	0.0019262	553.819304557391	33.6	0.96447	33.666	33.245	34.209	0.0667					75	34	4	0	0	0	0.25431	1	6588	6588		9.3831	2.66	1	316060			17893	342	10084	10085	22730	22730					0.07580523117235316
KENVKYAVR	9	Unmodified	_KENVKYAVR_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.K2432Nfs*23|1|0.23|ENSG00000005810|chr13:77140155-77140155|T/-|frameshift_variant;MYCBP2|p.E3042Vfs*11|1|0.09|ENSG00000005810|chr13:77097915-77097916|-/GGGAAGA|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.819473	1105.62439	0.52252	0.00028938	2.3631	0.0013087	2.8856	0.0015981	553.819158880126	33.687	0.97069	33.687	33.365	34.336	0	0.026742	0.0022419	NaN	12.241	80	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340630			17894	342	10084	10085							0.07580523117235316
KENVKYAVR	9	Unmodified	_KENVKYAVR_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.K2432Nfs*23|1|0.23|ENSG00000005810|chr13:77140155-77140155|T/-|frameshift_variant;MYCBP2|p.E3042Vfs*11|1|0.09|ENSG00000005810|chr13:77097915-77097916|-/GGGAAGA|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.819473	1105.62439	0.64954	0.00035973	-0.3925	-0.00021737	0.25704	0.00014236	553.8192289078333	33.56	0.40711	33.627	33.352	33.76	0.066357	-0.033162	-0.00081035	NaN	12.241	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265680			17895	342	10084	10085							0.07580523117235316
KEPASPVL	8	Unmodified	_KEPASPVL_					0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F;nc|ENSG00000049769|Q6ZSY5-2|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.74517822265625	2	420.744911	839.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.408	1	55.408	54.908	55.908	0								0	0	0	0.25356	1	13230	13230		36.044	5.8194	1				17896	656	10085	10086	22731	22731					0.04910997494471303
KEPASPVL	8	Unmodified	_KEPASPVL_					0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F;nc|ENSG00000049769|Q6ZSY5-2|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.7449951171875	2	420.744911	839.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.24	1	55.31	54.81	55.81	0.070885								0	0	0	0.21415	1	13175	13175		42.095	3.9434	1				17897	656	10085	10086	22732	22732					0.04910997494471303
KEPDEPLLPKQ	11	Unmodified	_KEPDEPLLPKQ_					0	0	0			REV__ENST00000488874.1_1_22:40391391-40393947:+|nuORF	REV__ENST00000488874.1_1_22:40391391-40393947:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.3563842773438	2	647.356085	1292.69762	0.30599	0.00019809	0.014159	9.1658E-06	0.32015	0.00020725	647.3560362060186	40.614	0.94613	40.714	40.427	41.373	0.099407					106	34	5	0	0	0	0.33432	1	8655	8655		18.373	0	1	5396100	+		17898	21583	10086	10087	22733	22733					0.06297607049191356
KEPKPLADVYI	11	Unmodified	_KEPKPLADVYI_					0	0	0		ENST00000465552.1_1_3:41277978-41278230:+|nuORF	ENST00000465552.1_1_3:41277978-41278230:+|nuORF	ENST00000465552.1_1_3:41277978-41278230:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.5630187988281	3	424.911456	1271.71254	0.055622	2.3634E-05	0.57474	0.00024421	0.63036	0.00026785	424.91157912740755	36.351	1.2664	36.351	35.719	36.985	0					66	45	2	0	0	0	0.32683	1	7224	7224		15.538	3.3637	1	477590			17899	10799	10087	10088	22734	22734					0.08755098917185933
KEPSLPGL	8	Unmodified	_KEPSLPGL_					0	0	0			REV__ENST00000459765.1_1_1:109824234-109825347:-|nuORF	REV__ENST00000459765.1_1_1:109824234-109825347:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.74517822265625	2	420.744911	839.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.241	1	55.241	54.741	55.741	0								0	0	0	0.19909	1	13177	13177		44.407	6.2558	1		+		17900	15658	10088	10089	22735	22735					0.04910997494471303
KEPSLPGL	8	Unmodified	_KEPSLPGL_					0	0	0			REV__ENST00000459765.1_1_1:109824234-109825347:-|nuORF	REV__ENST00000459765.1_1_1:109824234-109825347:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.7448425292969	2	420.744911	839.475269	0.35085	0.00014762	-0.2232	-9.3912E-05	0.12765	5.3708E-05	420.74467611140705	54.68	2.0203	54.664	54.17	56.19	-0.015923					153	73	3	0	0	0	0.19197	1	13272	13272		44.407	0	1	2313700	+		17901	15658	10088	10089	22736	22736					0.04910997494471303
KEQFRKLF	8	Unmodified	_KEQFRKLF_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7450561523438	2	548.319109	1094.62366	0.71297	0.00039094	-2.2825	-0.0012515	-1.5695	-0.00086061	548.3177136000185	39.893	0.31148	39.986	39.917	40.228	0.09267					17	10	2	0	0	0	0.34272	1	8515	8515		7.9102	2.1497	1	205740			17902	3053	10089	10090	22737	22737					0.0801372846817685
KEQKKQPL	8	Unmodified	_KEQKKQPL_					0	0	0			REV__ENSG00000131115|ENST00000313040|ZNF227	REV__ENSG00000131115|ENST00000313040|ZNF227	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7187194824219	2	499.803291	997.59203	0.12103	6.0491E-05	1.0491	0.00052432	1.1701	0.00058481	499.8030921054212	15.596	1.1624	15.532	15.041	16.203	-0.064413					54	39	2	0	0	0	0.34198	1	1224	1224		10.824	0.75	1	76096	+		17903	15500	10090	10091	22738	22738					0.09313735714226823
KEQLMHHARRF	11	Unmodified	_KEQLMHHARRF_					0	0	0			REV__ENST00000439986.8_1_18:57147449-57363899:-|nuORF	REV__ENST00000439986.8_1_18:57147449-57363899:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.81597900390625	3	484.926217	1451.75682	0.089066	4.319E-05	-2.1429	-0.0010392	-2.0539	-0.00099597	484.9243216020688	60.121	0.51845	60.109	59.94	60.459	-0.011486					30	18	2	0	0	0	0.3322	1	14737	14737		4.7159	0.87001	1	531870	+		17904	21040	10091	10092	22739	22739					0.049012245823405465
KEQVEKKKSA	10	Unmodified	_KEQVEKKKSA_					0	0	0		nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1;ENST00000536573.6_1_12:1213918-1353789:+|nuORF	nc|ENSG00000082805|Q8IUD2-5|ERC1	nc|ENSG00000082805|Q8IUD2-5|ERC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.3170776367188	2	587.843145	1173.67174	0.016006	9.4093E-06	0.62996	0.00037032	0.64597	0.00037973	587.8435835887326	12.575	0.16772	12.478	12.384	12.552	-0.096607					9	5	2	0	0	0	0.32146	1	159	159		1.1933	0	1	36463			17905	1210	10092	10093	22740	22740					0.09184757597586213
KEQVEKKKSA	10	Unmodified	_KEQVEKKKSA_					0	0	0		nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENSG00000082805|ENST00000360905|ERC1;ENST00000536573.6_1_12:1213918-1353789:+|nuORF	nc|ENSG00000082805|Q8IUD2-5|ERC1	nc|ENSG00000082805|Q8IUD2-5|ERC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	587.843145	1173.67174	-0.078106	-4.5914E-05	0.50543	0.00029711	0.42732	0.0002512	587.8436449929027	12.598	0.17424	12.53	12.406	12.58	-0.067579	0.026162	-7.8184E-05	NaN	1.1933	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28839			17906	1210	10092	10093							0.09184757597586213
KEQVQWVL	8	Unmodified	_KEQVQWVL_					0	0	0			REV__nc|ENSG00000167895|Q8IU68-2|TMC8	REV__nc|ENSG00000167895|Q8IU68-2|TMC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2644653320312	2	515.290017	1028.56548	0.25882	0.00013337	1.9254	0.00099215	2.1842	0.0011255	515.7926569440448	16.773	0.80181	16.773	16.267	17.069	0					55	27	3	0	0	0	0.34131	1	1403	1403		12.532	0.89125	1	176350	+		17907	17419	10093	10094	22741	22741					0.05234046822897653
KEQWQEQINQL	11	Unmodified	_KEQWQEQINQL_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2824401855469	3	481.912407	1442.71539	0.32905	0.00015857	0.85843	0.00041369	1.1875	0.00057226	481.9134621032924	23.665	0.85477	23.626	23.311	24.166	-0.038927					67	29	3	0	0	0	0.3331	1	3563	3563		2.2527	0.51045	1	76149			17908	1113	10094	10095	22742	22742					0.01174322304063935
KERFRQSGALI	11	Unmodified	_KERFRQSGALI_					0	0	0			REV__ENSG00000162949|ENST00000295055|CAPN13	REV__ENSG00000162949|ENST00000295055|CAPN13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.24774169921875	3	435.585966	1303.73607	-1.1944	-0.00052026	0.38351	0.00016705	-0.81088	-0.00035321	435.5860749193693	34.534	0.43757	34.609	34.326	34.763	0.075306					25	15	2	0	0	0	0.33025	1	6825	6825		3.8459	0.25323	1	127800	+		17909	17025	10095	10096	22743	22743					0.09634957474395378
KERLKKVKG	9	Unmodified	_KERLKKVKG_					0	0	0		ENST00000536684.2_1_11:10529843-10529987:-|nuORF	ENST00000536684.2_1_11:10529843-10529987:-|nuORF	ENST00000536684.2_1_11:10529843-10529987:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.361572265625	2	543.361308	1084.70806	0.21049	0.00011437	0.40538	0.00022027	0.61588	0.00033464	543.3614822712394	13.333	0.34361	13.234	13.097	13.441	-0.099291					18	11	3	0	0	0	0.27726	1	409	409		12.241	0	1	128090			17910	11683	10096	10097	22744	22744					0.1690967928493592
KERLPEISSL	10	Unmodified	_KERLPEISSL_					0	0	0			REV__ENSG00000102010|ENST00000348343|BMX	REV__ENSG00000102010|ENST00000348343|BMX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.2252197265625	2	586.337695	1170.66084	0.25205	0.00014779	-0.045098	-2.6443E-05	0.20695	0.00012134	586.3377962523499	66.922	1.6307	67.006	66.3	67.931	0.083824					132	57	4	0	0	0	0.31401	1	17019	17019		14.405	2.9107	1	2016700	+		17911	14300	10097	10098	22745	22745					0.08233355223296712
KERRYARK	8	Unmodified	_KERRYARK_					0	0	0		ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.830810546875	2	553.830706	1105.64686	-0.065749	-3.6414E-05	-0.36179	-0.00020037	-0.42754	-0.00023678	554.331901879443	115.97	4.5835	115.97	115.37	119.95	0					1102	577	2	0	0	0	0.46491	6	30482	30482;30484;30516;30716;30828;30901		0.69038	0.088878	1	34981			17912	5343	10098	10099	22746;22747;22748;22749;22750;22751	22746					0.09826167305504896
KERSSPVK	8	Unmodified	_KERSSPVK_					0	0	0			REV__nc|ENSG00000099331|Q13459-2|MYO9B	REV__nc|ENSG00000099331|Q13459-2|MYO9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7717590332031	2	465.771991	929.529429	-0.18577	-8.6526E-05	-0.36069	-0.000168	-0.54646	-0.00025452	465.77182561422853	16.141	0.8946	16.027	15.692	16.586	-0.11434					55	30	2	0	0	0	0.39102	1	1288	1288		20.415	3.3016	1	303890	+		17913	14129	10099	10100	22752	22752					0.06184589646045424
KERSSPVK	8	Unmodified	_KERSSPVK_					0	0	0			REV__nc|ENSG00000099331|Q13459-2|MYO9B	REV__nc|ENSG00000099331|Q13459-2|MYO9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.77154541015625	2	465.771991	929.529429	0.06671	3.1072E-05	-0.64016	-0.00029817	-0.57345	-0.0002671	465.7717026595827	16.084	0.77006	16.021	15.756	16.526	-0.062534					46	26	2	0	0	0	0.20663	1	1203	1203		41.84	3.6641	1	384810	+		17914	14129	10099	10100	22753	22753					0.06184589646045424
KERYPILHPI	10	Unmodified	_KERYPILHPI_					0	0	0			REV__ENST00000413379.7_1_19:47712768-47713068:+|nuORF	REV__ENST00000413379.7_1_19:47712768-47713068:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.22900390625	3	422.583674	1264.72919	0.23237	9.8195E-05	-0.47901	-0.00020242	-0.24664	-0.00010423	422.5834073081675	54.438	0.48857	54.438	54.162	54.651	0					29	17	2	0	0	0	0.31358	1	12907	12907		3.0723	0.81953	1	219450	+		17915	20791	10100	10101	22754	22754					0.10741644593804267
KESDVYANEV	10	Unmodified	_KESDVYANEV_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.85400390625	2	577.272218	1152.52988	-0.14484	-8.3611E-05	-3.1318	-0.0018079	-3.2766	-0.0018915	577.2708943452267	13.251	0.2288	13.183	13.047	13.275	-0.067495					10	7	2	0	0	0	0.32072	1	334	334		2.9952	0.93549	1	18467	+		17916	16560	10101	10102	22755	22755					-0.04028080215448426
KESHPVEQ	8	Unmodified	_KESHPVEQ_					0	0	0			REV__nc|ENSG00000113303|Q6UX41-4|BTNL8	REV__nc|ENSG00000113303|Q6UX41-4|BTNL8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.25030517578125	2	477.237981	952.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.825	1	15.761	15.261	16.261	-0.064413								0	0	0	0.3229	1	1142	1142		25.399	3.6527	1		+		17917	14803	10102	10103	22756	22756					-0.016722800046181874
KESKSDRK	8	Unmodified	_KESKSDRK_					0	0	0			REV__ENST00000521776.2_1_13:52602562-52602661:+|nuORF	REV__ENST00000521776.2_1_13:52602562-52602661:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.27984619140625	2	489.272355	976.530158	-0.10894	-5.3302E-05	-2.2643	-0.0011079	-2.3732	-0.0011612	489.27112728886163	12.813	0.38469	12.746	12.52	12.905	-0.067496					21	12	3	0	0	0	0.4396	1	188	188		9.3831	2.66	1	171550	+		17918	21908	10103	10104	22757	22757					0.04095384295101212
KESLLVSH	8	Unmodified	_KESLLVSH_					0	0	0		nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7485046386719	2	456.761092	911.507631	0.046693	2.1328E-05	-1.5254	-0.00069672	-1.4787	-0.00067539	456.7606411207657	17.74	0.45273	17.679	17.472	17.925	-0.060429					25	15	2	0	0	0	0.41758	1	1673	1673		16.942	3.0362	1	14652			17919	4139	10104	10105	22758	22758					0.04833784897482474
KESQPKDVIK	10	Unmodified	_KESQPKDVIK_					0	0	0		ENST00000510537.1_1_5:80538151-80538241:-|nuORF	ENST00000510537.1_1_5:80538151-80538241:-|nuORF	ENST00000510537.1_1_5:80538151-80538241:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8076171875	2	586.337695	1170.66084	0.0033917	1.9887E-06	0.29818	0.00017483	0.30157	0.00017682	586.3374000326977	31.198	0.43416	31.24	31.024	31.458	0.042364					22	15	2	0	0	0	0.31986	1	5830	5830		4.897	0	1	186580			17920	11372	10105	10106	22759	22759					0.08233355223273975
KESSREKRER	10	Unmodified	_KESSREKRER_					0	0	0		nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENSG00000133226|ENST00000323848|SRRM1	nc|ENSG00000133226|Q8IYB3-2|SRRM1	nc|ENSG00000133226|Q8IYB3-2|SRRM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.24102783203125	3	435.572496	1303.69566	-0.40241	-0.00017528	2.1178	0.00092246	1.7154	0.00074718	435.90900780976807	13.868	0.1731	13.802	13.687	13.861	-0.066067					6	5	2	0	0	0	0.31256	1	551	551		17.863	1.5886	1	6470			17921	3700	10106	10107	22760	22760					0.055959910839419535
KESTLKFRTE	10	Unmodified	_KESTLKFRTE_					0	0	0		ENSG00000109193|ENST00000226444|SULT1E1	ENSG00000109193|ENST00000226444|SULT1E1	ENSG00000109193|ENST00000226444|SULT1E1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8407592773438	2	619.840602	1237.66665	-0.032526	-2.0161E-05	0.29391	0.00018218	0.26139	0.00016202	619.8406833501189	39.382	0.55109	39.475	39.226	39.777	0.09267					54	19	4	0	0	0	0.28078	1	8270	8270		26.268	2.4784	1	944380			17922	2245	10107	10108	22761	22761					0.057324537349586535
KESTLKFRTE	10	Unmodified	_KESTLKFRTE_					0	0	0		ENSG00000109193|ENST00000226444|SULT1E1	ENSG00000109193|ENST00000226444|SULT1E1	ENSG00000109193|ENST00000226444|SULT1E1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	619.840602	1237.66665	-0.074489	-4.6171E-05	0.49832	0.00030888	0.42383	0.00026271	619.8408442254573	39.507	0.72831	39.507	39.268	39.996	0	0.032502	0.0002346	NaN	26.268	62	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	701400			17923	2245	10107	10108							0.057324537349586535
KESTLKFRTE	10	Unmodified	_KESTLKFRTE_					0	0	0		ENSG00000109193|ENST00000226444|SULT1E1	ENSG00000109193|ENST00000226444|SULT1E1	ENSG00000109193|ENST00000226444|SULT1E1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	619.840602	1237.66665	-0.032526	-2.0161E-05	0.29391	0.00018218	0.26139	0.00016202	619.8406833501189	39.382	0.55109	39.475	39.226	39.777	0.09267	0.00059991	-1.8801E-05	NaN	26.268	54	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	944380			17924	2245	10107	10108							0.057324537349586535
KESTLKFRTE	10	Unmodified	_KESTLKFRTE_					0	0	0		ENSG00000109193|ENST00000226444|SULT1E1	ENSG00000109193|ENST00000226444|SULT1E1	ENSG00000109193|ENST00000226444|SULT1E1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	619.840602	1237.66665	0.23637	0.00014651	0.11052	6.8504E-05	0.34689	0.00021502	619.8405500590495	39.342	0.58067	39.441	39.236	39.817	0.099407	-0.033102	-0.00024615	NaN	26.268	53	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1001700			17925	2245	10107	10108							0.057324537349586535
KESYSRVL	8	Unmodified	_KESYSRVL_					0	0	0		ENST00000453432.5_1_2:220094544-220097018:+|nuORF	ENST00000453432.5_1_2:220094544-220097018:+|nuORF	ENST00000453432.5_1_2:220094544-220097018:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.21881103515625	2	491.271824	980.529095	0.012786	6.2813E-06	0.14462	7.1048E-05	0.15741	7.733E-05	491.27193429178647	14.658	0.1612	14.592	14.483	14.644	-0.066067					7	5	2	0	0	0	0.34337	1	804	804		5.2307	0	1	17087			17926	10670	10108	10109	22762	22762					0.03805169926192775
KETDEESR	8	Unmodified	_KETDEESR_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.5884094238281	2	497.22781	992.441068	0.36763	0.0001828	0.50332	0.00025026	0.87095	0.00043306	497.22794445128056	28.767	0.39512	28.767	28.611	29.006	0					16	13	2	0	0	0	0.34247	1	5115	5115		8.5933	0	1	70622	+		17927	17948	10109	10110	22763	22763					-0.05545495455078253
KETDEESR	8	Unmodified	_KETDEESR_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	497.22781	992.441068	0.16374	8.1417E-05	0.19911	9.9003E-05	0.36285	0.00018042	497.2277746930852	28.789	0.23291	28.789	28.661	28.894	0.0004673	0.0109	-0.00017528	NaN	8.5933	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75733	+		17928	17948	10109	10110							-0.05545495455078253
KETKILAK	8	Unmodified	_KETKILAK_					0	0	0		ENSG00000151304|ENST00000339397|SRFBP1	ENSG00000151304|ENST00000339397|SRFBP1	ENSG00000151304|ENST00000339397|SRFBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.24542236328125	2	465.80276	929.590967	-0.26984	-0.00012569	-0.51659	-0.00024063	-0.78643	-0.00036632	465.8025497729986	28.115	0.36633	28.11	27.912	28.278	-0.0042572					16	12	2	0	0	0	0.34313	1	4865	4865		3.5965	0.31518	1	48761			17929	4951	10110	10111	22764	22764					0.12335521345323741
KETKLKGI	8	Unmodified	_KETKLKGI_					0	0	0			REV__nc|ENSG00000136811|Q5BJF6-9|ODF2	REV__nc|ENSG00000136811|Q5BJF6-9|ODF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7220764160156	2	458.794935	915.575317	0.34518	0.00015837	0.6992	0.00032079	1.0444	0.00047916	458.79530421310744	19.897	0.38528	19.841	19.705	20.09	-0.055691					20	13	2	0	0	0	0.34353	1	2412	2412		4.756	0	1	49372	+		17930	15825	10111	10112	22765	22765					0.11415234828291432
KEVFFDPNF	9	Unmodified	_KEVFFDPNF_					0	0	0			REV__ENST00000493068.2_1_10:99025521-99052393:-|nuORF	REV__ENST00000493068.2_1_10:99025521-99052393:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.7985229492188	2	571.779482	1141.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.536	1	63.632	63.132	64.132	0.095722								0	0	0	0.24066	1	15734	15734		9.3831	0.035688	1		+		17931	13109	10112	10113	22766	22766					-0.020699632766081777
KEVFQTTEY	9	Unmodified	_KEVFQTTEY_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-2|MYO6	REV__nc|ENSG00000196586|Q9UM54-2|MYO6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.8092651367188	2	572.779679	1143.5448	0.3484	0.00019956	1.3919	0.00079726	1.7403	0.00099682	572.7805687592924	45.172	0.48404	45.247	45.042	45.526	0.075047					29	17	2	0	0	0	0.23783	1	10010	10010		12.532	3.9383	1	419140	+		17932	18665	10113	10114	22767	22767					-0.021225883474244256
KEVKDEKKEER	11	Unmodified	_KEVKDEKKEER_					0	0	0			REV__ENST00000496278.1_1_1:46120199-46120481:-|nuORF	REV__ENST00000496278.1_1_1:46120199-46120481:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7821044921875	3	473.259696	1416.75726	0.04622	2.1874E-05	4.1575	0.0019676	4.2037	0.0019895	473.26126531896296	28.838	0.34092	28.839	28.606	28.946	0.00046921					16	11	2	0	0	0	0.3331	1	5086	5086		2.2527	0.16876	1	61700	+		17933	16859	10114	10115	22768	22768					0.06554877992584807
KEVLRLVI	8	Unmodified	_KEVLRLVI_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.8028564453125	2	485.326402	968.638252	0.14609	7.0903E-05	-0.22379	-0.00010861	-0.077701	-3.771E-05	485.326261663487	33.297	0.44563	33.364	33.132	33.577	0.066704					26	15	2	0	0	0	0.34198	1	6394	6394		10.824	0	1	190310			17934	5831	10115	10116	22769	22769					0.15267800616322802
KEVLSHWHAI	10	Unmodified	_KEVLSHWHAI_					0	0	0			REV__ENSG00000170743|ENST00000318881|SYT9	REV__ENSG00000170743|ENST00000318881|SYT9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.8796691894531	3	407.224257	1218.65094	-0.39794	-0.00016205	-0.91399	-0.0003722	-1.3119	-0.00053425	407.2238694915413	13.807	0.24534	13.807	13.687	13.932	0					22	8	3	0	0	0	0.31538	1	541	541		12.873	2.722	1	110020	+		17935	17594	10116	10117	22770	22770					0.050362120085537754
KEVRNIVG	8	Unmodified	_KEVRNIVG_					0	0	0			REV__nc|ENSG00000087053|Q13614-2|MTMR2	REV__nc|ENSG00000087053|Q13614-2|MTMR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.77490234375	2	457.774534	913.534515	-0.21154	-9.6836E-05	0.20309	9.2971E-05	-0.0084429	-3.865E-06	457.7750555559323	13.667	0.52818	13.601	13.388	13.916	-0.066804					48	18	4	0	0	0	0.33441	1	486	486		26.884	2.8631	1	107870	+		17936	13984	10117	10118	22771	22771					0.07428893508676992
KEVRVVGQ	8	Unmodified	_KEVRVVGQ_					0	0	0		ENST00000527193.1_1_19:46878896-46886865:+|nuORF	ENST00000527193.1_1_19:46878896-46886865:+|nuORF	ENST00000527193.1_1_19:46878896-46886865:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.77484130859375	2	457.774534	913.534515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.594	1	13.594	13.094	14.094	0								0	0	0	0.33717	1	471	471		20.454	2.3073	1				17937	11568	10118	10119	22772	22772					0.07428893508676992
KEVVPEKKVPA	11	Unmodified	_KEVVPEKKVPA_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.8508911132812	2	612.371538	1222.72852	0.23869	0.00014617	0.44079	0.00026993	0.67948	0.0004161	612.3717070440696	51.934	0.42092	51.934	51.702	52.123	0					17	15	2	0	0	0	0.33073	1	12186	12186		7.1017	1.3699	1	191370			17938	5186	10119	10120	22773	22773					0.12606805154086942
KEYERTYF	8	Unmodified	_KEYERTYF_					0	0	0			REV__ENST00000517413.5_1_8:17512046-17533895:-|nuORF	REV__ENST00000517413.5_1_8:17512046-17533895:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2616577148438	2	568.274564	1134.53457	0.32731	0.000186	-0.92865	-0.00052773	-0.60134	-0.00034173	568.2739718334861	46.282	0.50664	46.342	46.18	46.686	0.059837					38	18	3	0	0	0	0.34198	1	10371	10371		6.7232	5.2413	1	903350	+		17939	15414	10120	10121	22774	22774					-0.0273115128200061
KFADKLIEVA	10	Unmodified	_KFADKLIEVA_					0	0	0			REV__nc|ENSG00000155313|Q9UHP3|USP25	REV__nc|ENSG00000155313|Q9UHP3|USP25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.8193969726562	2	567.331882	1132.64921	0.41071	0.00023301	-0.67552	-0.00038325	-0.26482	-0.00015024	567.3317464189754	44.659	0.43385	44.734	44.449	44.883	0.075047					23	15	2	0	0	0	0.33594	1	9880	9880		15.248	1.3424	1	200810	+		17940	16695	10121	10122	22775	22775					0.0881915819995811
KFAEEFYSF	9	Unmodified	_KFAEEFYSF_					0	0	0		nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.8087768554688	2	584.27149	1166.52843	0.36442	0.00021292	0.43118	0.00025192	0.79559	0.00046484	584.2716749642203	62.275	0.78524	62.275	62.022	62.807	0					87	28	4	0	0	0	0.008366	1	15373	15373		93.166	45.417	1	1460800			17941	5860	10122	10123	22776	22776					-0.0481766951352256
KFAEEFYSF	9	Unmodified	_KFAEEFYSF_					0	0	0		nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.8084716796875	2	584.27149	1166.52843	0.26626	0.00015557	0.52616	0.00030742	0.79242	0.00046299	584.2717406409973	62.258	0.70602	62.355	62.089	62.795	0.096985					67	25	3	0	0	0	0.0027395	1	15341	15341		114.2	58.025	1	1768900			17942	5860	10122	10123	22777	22777					-0.0481766951352256
KFAEEFYSF	9	Unmodified	_KFAEEFYSF_					0	0	0		nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.8087768554688	2	584.27149	1166.52843	0.38961	0.00022764	0.4467	0.000261	0.83631	0.00048863	584.27169964383	62.301	0.73864	62.292	62.04	62.778	-0.0085526					81	27	4	0	0	0	0.075068	1	15319	15319		65.474	39.206	1	1839500			17943	5860	10122	10123	22778	22778					-0.0481766951352256
KFALFDEKHRE	11	Unmodified	_KFALFDEKHRE_					0	0	0		ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.917236328125	3	473.917493	1418.73065	0.22434	0.00010632	-0.57994	-0.00027484	-0.3556	-0.00016852	473.91722506807236	30.106	0.72021	30.106	29.833	30.553	0					79	25	4	0	0	0	0.43809	1	5503	5503		6.2344	0.36622	1	1006000			17944	3065	10123	10124	22779	22779					0.038032338918583264
KFALFDEKHRE	11	Unmodified	_KFALFDEKHRE_					0	0	0		ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.91729736328125	3	473.917493	1418.73065	-0.065065	-3.0836E-05	-0.36467	-0.00017282	-0.42974	-0.00020366	473.91730446268275	30.157	0.69205	30.185	29.838	30.53	0.027157					74	23	4	0	0	0	0.43809	1	5450	5450		6.2344	0	1	1080700			17945	3065	10123	10124	22780	22780					0.038032338918583264
KFAPPLSPLSS	11	Unmodified	_KFAPPLSPLSS_					0	0	0		ENSG00000157502|ENST00000357175|PWWP3B	ENSG00000157502|ENST00000357175|PWWP3B	ENSG00000157502|ENST00000357175|PWWP3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.324462890625	2	572.324057	1142.63356	-0.10426	-5.9671E-05	0.38395	0.00021974	0.27968	0.00016007	572.3244313575452	13.114	0.61052	13.114	12.874	13.484	0					68	21	5	0	0	0	0.44523	1	350	350		5.2969	1.3525	1	1521600			17946	5310	10124	10125	22781	22781					0.06794871682905068
KFAPPLSPLSS	11	Unmodified	_KFAPPLSPLSS_					0	0	0		ENSG00000157502|ENST00000357175|PWWP3B	ENSG00000157502|ENST00000357175|PWWP3B	ENSG00000157502|ENST00000357175|PWWP3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.324462890625	2	572.324057	1142.63356	0.017231	9.8619E-06	0.32781	0.00018761	0.34504	0.00019747	572.3243897686106	13.213	0.65152	13.114	12.841	13.492	-0.099291					63	22	5	0	0	0	0.44523	1	386	386		5.2969	1.3525	1	1593100			17947	5310	10124	10125	22782	22782					0.06794871682905068
KFAPPLSPLSS	11	Unmodified	_KFAPPLSPLSS_					0	0	0		ENSG00000157502|ENST00000357175|PWWP3B	ENSG00000157502|ENST00000357175|PWWP3B	ENSG00000157502|ENST00000357175|PWWP3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3235473632812	2	572.324057	1142.63356	-0.15891	-9.0947E-05	0.45856	0.00026244	0.29965	0.00017149	572.3244496756591	13.158	0.78099	13.09	12.819	13.6	-0.067496					81	27	5	0	0	0	0.44523	2	322	322;366		5.2969	1.3525	1	1189800			17948	5310	10124	10125	22783;22784	22783					0.06794871682905068
KFAPRRRK	8	Unmodified	_KFAPRRRK_					0	0	0			REV__ENST00000366756.3_1_6:170599276-170599525:-|nuORF	REV__ENST00000366756.3_1_6:170599276-170599525:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3170166015625	2	529.838334	1057.66212	0.13262	7.0267E-05	2.4258	0.0012853	2.5584	0.0013556	529.8391648218144	13.976	0.23441	13.91	13.802	14.037	-0.066068					12	7	2	0	0	0	0.34408	1	580	580		2.3027	0.82083	1	21322	+		17949	20297	10125	10126	22785	22785					0.13559078893354126
KFAPRRRK	8	Unmodified	_KFAPRRRK_					0	0	0			REV__ENST00000366756.3_1_6:170599276-170599525:-|nuORF	REV__ENST00000366756.3_1_6:170599276-170599525:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	529.838334	1057.66212	0.035193	1.8646E-05	2.6305	0.0013937	2.6657	0.0014124	529.8393999715305	13.993	0.28488	13.888	13.738	14.023	-0.10466	-0.010809	7.7576E-05	NaN	2.3027	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29883	+		17950	20297	10125	10126							0.13559078893354126
KFARGPRAK	9	Unmodified	_KFARGPRAK_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.816162109375	2	515.817067	1029.61958	0.064487	3.3263E-05	-1.1912	-0.00061444	-1.1267	-0.00058118	515.8162397408033	17.509	0.50101	17.392	17.162	17.663	-0.11739					37	17	3	0	0	0	0.23007	1	1653	1653		19.257	4.8516	1	120680			17951	4766	10126	10127	22786	22786					0.10595683765109243
KFARGPRAK	9	Unmodified	_KFARGPRAK_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	515.817067	1029.61958	0.20483	0.00010565	-1.3188	-0.00068024	-1.1139	-0.00057459	515.8162002341317	17.428	0.64061	17.367	17.152	17.792	-0.060429	0.0070673	9.7387E-06	NaN	19.257	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124280			17952	4766	10126	10127							0.10595683765109243
KFDAECVPLT	10	Unmodified	_KFDAECVPLT_					0	0	0			REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.7969970703125	2	561.778625	1121.5427	0.21774	0.00012232	-0.088675	-4.9816E-05	0.12906	7.2504E-05	561.7786221726865	39.338	0.57954	39.43	39.17	39.75	0.09267					54	20	4	0	0	0	0.37133	1	8345	8345		8.7454	8.7454	1	742900	+		17953	14058	10127	10128	22787	22787					-0.013213403569125148
KFDDEKFIL	9	Unmodified	_KFDDEKFIL_					0	0	0		ENST00000603675.1_1_3:178211127-178211487:-|nuORF	ENST00000603675.1_1_3:178211127-178211487:-|nuORF	ENST00000603675.1_1_3:178211127-178211487:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3009643554688	2	577.808239	1153.60193	0.33748	0.000195	1.5354	0.00088715	1.8728	0.0010821	577.8085608062298	74.821	0.63995	74.874	74.519	75.159	0.052361					45	22	4	0	0	0	0.24471	1	19098	19098		17.113	2.7075	1	460590			17954	12275	10128	10129	22788	22788					0.03126878928969745
KFDSWSGVLE	10	Unmodified	_KFDSWSGVLE_					0	0	0			REV__nc|ENSG00000103710|Q9NYN1-2|RASL12	REV__nc|ENSG00000103710|Q9NYN1-2|RASL12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.2879638671875	2	584.287671	1166.56079	0.30292	0.00017699	0.53916	0.00031502	0.84208	0.00049202	584.2885781977938	57.808	2.5163	57.791	57.364	59.88	-0.0172					313	90	6	0	0	0	0.11961	1	14091	14091		43.772	0	1	87221000	+		17955	22920	10129	10130	22789	22789					-0.015828821105287716
KFECTECGYKF	11	Unmodified	_KFECTECGYKF_					0	0	0		ENST00000498342.5_1_1:6648784-6649012:+|nuORF;ENST00000466941.1_1_1:6648784-6649269:+|nuORF;ENSG00000204859|ENST00000377674|ZBTB48	ENST00000498342.5_1_1:6648784-6649012:+|nuORF	ENST00000498342.5_1_1:6648784-6649012:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.1982421875	3	452.198391	1353.57334	0.56149	0.00025391	-0.81356	-0.00036789	-0.25207	-0.00011399	452.19799513735217	37.224	0.54721	37.224	36.93	37.477	0					45	19	3	0	0	0	0.40928	1	7633	7633		10.016	1.2709	1	609790			17956	8260	10130	10131	22790	22790					-0.08929930034173594
KFECTECGYKF	11	Unmodified	_KFECTECGYKF_					0	0	0		ENST00000498342.5_1_1:6648784-6649012:+|nuORF;ENST00000466941.1_1_1:6648784-6649269:+|nuORF;ENSG00000204859|ENST00000377674|ZBTB48	ENST00000498342.5_1_1:6648784-6649012:+|nuORF	ENST00000498342.5_1_1:6648784-6649012:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.1983337402344	3	452.198391	1353.57334	0.39531	0.00017876	-0.54569	-0.00024676	-0.15038	-6.8001E-05	452.19806794157654	37.085	0.62615	37.178	36.898	37.524	0.093014					55	22	4	0	0	0	0.40928	2	7568	7568;7614		10.016	4.7194	1	564630			17957	8260	10130	10131	22791;22792	22791					-0.08929930034173594
KFEKDFDFESA	11	Unmodified	_KFEKDFDFESA_					0	0	0		ENST00000403062.2_1_6:122004885-122004996:+|nuORF;nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A	ENST00000403062.2_1_6:122004885-122004996:+|nuORF	ENST00000403062.2_1_6:122004885-122004996:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.91131591796875	3	454.878592	1361.61395	-0.18442	-8.3887E-05	0.26975	0.0001227	0.085328	3.8814E-05	454.8785129278401	14.012	0.20663	13.907	13.816	14.023	-0.10466					8	6	2	0	0	0	0.33346	1	583	583		0.50596	0	1	27010			17958	8633	10131	10132	22793	22793					-0.05239549118505238
KFEKDFDFESA	11	Unmodified	_KFEKDFDFESA_					0	0	0		ENST00000403062.2_1_6:122004885-122004996:+|nuORF;nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A	ENST00000403062.2_1_6:122004885-122004996:+|nuORF	ENST00000403062.2_1_6:122004885-122004996:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	454.878592	1361.61395	-0.20348	-9.2559E-05	0.81925	0.00037266	0.61577	0.0002801	454.8788493402892	13.963	0.2669	13.897	13.831	14.098	-0.066068	-0.0050006	0.0002046	NaN	0.50596	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19048			17959	8633	10131	10132							-0.05239549118505238
KFFIWLRVKKK	11	Unmodified	_KFFIWLRVKKK_					0	0	0		ENST00000376083.7_2_9:88296229-88307675:-|nuORF	ENST00000376083.7_2_9:88296229-88307675:-|nuORF	ENST00000376083.7_2_9:88296229-88307675:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.8296203613281	3	498.322013	1491.94421	0.57398	0.00028603	-0.47575	-0.00023708	0.098232	4.8951E-05	498.3216175930861	45.155	0.76665	45.223	45.034	45.801	0.068569					64	26	4	0	0	0	0.33334	1	10232	10232		1.2148	1.2148	1	485680			17960	9919	10132	10133	22794	22794					0.21791611129378907
KFFLALVVFF	10	Unmodified	_KFFLALVVFF_					0	0	0		ENST00000486860.5_1_7:87838471-87849341:-|nuORF	ENST00000486860.5_1_7:87838471-87849341:-|nuORF	ENST00000486860.5_1_7:87838471-87849341:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5841369628906	3	410.914361	1229.72125	0.04014	1.6494E-05	-3.1692	-0.0013023	-3.1291	-0.0012858	410.9129579682443	17.678	0.20234	17.618	17.502	17.704	-0.060429					8	6	2	0	0	0	0.32137	1	1667	1667		1.7423	0.78	1	9434.1			17961	11109	10133	10134	22795	22795					0.1155811734429335
KFFQKSSSR	9	Unmodified	_KFFQKSSSR_					0	0	0		HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;nc|ENSG00000089472|Q9BQS7-4|HEPH	HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7930908203125	2	557.803823	1113.59309	0.10013	5.5854E-05	0.20879	0.00011646	0.30892	0.00017232	557.8038455805049	30.797	0.73731	30.824	30.555	31.292	0.027159					62	26	3	0	0	0	0.28674	1	5817	5817		10.824	1.4408	1	752150			17962	1359	10134	10135	22796	22796					0.040839500831452824
KFFRSRSFR	9	Unmodified	_KFFRSRSFR_					0	0	0			REV__chr3:42794271-42804436|114|30.61|0.0|21.55|-|1|None,HIGD1A|1	REV__chr3:42794271-42804436|114|30.61|0.0|21.55|-|1|None,HIGD1A|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.19329833984375	3	410.899996	1229.67816	-0.096176	-3.9519E-05	0.29293	0.00012036	0.19675	8.0845E-05	410.89978999849137	17.522	0.74708	17.522	17.151	17.898	0					43	25	2	0	0	0	0.26186	1	1587	1587		2.086	0.34373	1	78462	+		17963	13193	10135	10136	22797	22797					0.0725074033960027
KFFRSRSFR	9	Unmodified	_KFFRSRSFR_					0	0	0			REV__chr3:42794271-42804436|114|30.61|0.0|21.55|-|1|None,HIGD1A|1	REV__chr3:42794271-42804436|114|30.61|0.0|21.55|-|1|None,HIGD1A|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5841369628906	3	410.899996	1229.67816	0.02345	9.6355E-06	0.28204	0.00011589	0.30549	0.00012553	410.8997295614115	17.654	0.67259	17.594	17.33	18.002	-0.060429					41	23	2	0	0	0	0.26186	1	1667	1667		2.086	0.49373	1	58516	+		17964	13193	10135	10136	22798	22798					0.0725074033960027
KFFRWVRR	8	Unmodified	_KFFRWVRR_					0	0	0		ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8560791015625	2	597.853984	1193.69342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.697	1	94.697	94.197	95.197	0								0	0	0	0.37724	1	25263	25263		2.3027	0.4585	1				17965	7573	10136	10137	22799	22799					0.1043165192743345
KFFRWVRR	8	Unmodified	_KFFRWVRR_					0	0	0		ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8565673828125	2	597.853984	1193.69342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.702	1	97.702	97.202	98.202	0								0	0	0	0.37724	1	26133	26133		2.3027	0.82083	1				17966	7573	10136	10137	22800	22800					0.1043165192743345
KFFRWVRR	8	Unmodified	_KFFRWVRR_					0	0	0		ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8566284179688	2	597.853984	1193.69342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.753	1	97.753	97.253	98.253	0								0	0	0	0.37724	1	26147	26147		2.3027	1.2313	1				17967	7573	10136	10137	22801	22801					0.1043165192743345
KFFRWVRR	8	Unmodified	_KFFRWVRR_					0	0	0		ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8561401367188	2	597.853984	1193.69342	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.594	1	96.664	96.164	97.164	0.070465								0	0	0	0.37724	1	25823	25823		2.3027	0.4585	1				17968	7573	10136	10137	22802	22802					0.1043165192743345
KFGCKILM	8	Unmodified	_KFGCKILM_					0	0	0			REV__ENST00000434764.1_1_2:105486345-105489033:-|nuORF	REV__ENST00000434764.1_1_2:105486345-105489033:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.7878112792969	2	470.261359	938.508165	0.013313	6.2607E-06	-0.97175	-0.00045698	-0.95844	-0.00045072	470.2608005970119	17.531	0.29386	17.531	17.396	17.69	0					13	9	2	0	0	0	0.34337	1	1656	1656		5.2307	1.6342	1	24580	+		17969	20987	10137	10138	22803	22803					0.03645165021316643
KFIARYGGRK	10	Unmodified	_KFIARYGGRK_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7685958-7686162:-|nuORF;ENST00000600230.1_1_19:7685297-7686162:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.35888671875	2	598.356557	1194.69856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.288	1	99.281	98.781	99.781	-0.006897								0	0	0	0.37664	1	26595	26595		3.5965	0.60125	1				17970	1072	10138	10139	22804	22804					0.10899910999410167
KFIDNTLYF	9	Unmodified	_KFIDNTLYF_					0	0	0		ENST00000533858.5_1_11:112021793-112034722:-|nuORF;ENST00000534225.1_1_11:112024279-112034806:-|nuORF;nc|ENSG00000150782|Q14116-2|IL18;ENSG00000150782|ENST00000280357|IL18	ENST00000533858.5_1_11:112021793-112034722:-|nuORF	ENST00000533858.5_1_11:112021793-112034722:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8023071289062	2	580.802957	1159.59136	0.5	0.0002904	-1.0471	-0.00060817	-0.54712	-0.00031777	580.8021240616216	64.459	0.57175	64.459	64.262	64.834	0					49	20	3	0	0	0	0.074552	1	16008	16008		43.772	7.6454	1	955740			17971	4925	10139	10140	22805	22805					0.017948962745094832
KFIDNTLYF	9	Unmodified	_KFIDNTLYF_					0	0	0		ENST00000533858.5_1_11:112021793-112034722:-|nuORF;ENST00000534225.1_1_11:112024279-112034806:-|nuORF;nc|ENSG00000150782|Q14116-2|IL18;ENSG00000150782|ENST00000280357|IL18	ENST00000533858.5_1_11:112021793-112034722:-|nuORF	ENST00000533858.5_1_11:112021793-112034722:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8028564453125	2	580.802957	1159.59136	0.46506	0.00027011	-0.73493	-0.00042685	-0.26987	-0.00015674	580.8021769664546	64.338	0.58807	64.431	64.234	64.822	0.09288					53	21	3	0	0	0	0.018449	1	15983	15983		66.457	16.524	1	898640			17972	4925	10139	10140	22806	22806					0.017948962745094832
KFIDNTLYF	9	Unmodified	_KFIDNTLYF_					0	0	0		ENST00000533858.5_1_11:112021793-112034722:-|nuORF;ENST00000534225.1_1_11:112024279-112034806:-|nuORF;nc|ENSG00000150782|Q14116-2|IL18;ENSG00000150782|ENST00000280357|IL18	ENST00000533858.5_1_11:112021793-112034722:-|nuORF	ENST00000533858.5_1_11:112021793-112034722:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8026123046875	2	580.802957	1159.59136	0.47238	0.00027436	-0.72373	-0.00042034	-0.25135	-0.00014599	580.8023537204878	64.521	0.69328	64.511	64.231	64.924	-0.0095291					57	24	3	0	0	0	0.069258	2	16012	16012;16064		45.74	5.7826	1	947380			17973	4925	10139	10140	22807;22808	22807					0.017948962745094832
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.796630859375	2	543.795132	1085.57571	0.58368	0.0003174	0.11764	6.3974E-05	0.70132	0.00038138	543.7960462669067	36.356	2.0456	36.356	35.8	37.846	0					284	73	6	0	0	0	4.9382E-11	11	7411	7310;7359;7411;7454;7496;7542;7584;7611;7658;7702;7790		187.14	108.41	1	123980000			17974	1567	10140	10141	22809;22810;22811;22812;22813;22814;22815;22816;22817;22818;22819	22811					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7830200195312	2	543.795132	1085.57571	0.25186	0.00013696	-0.16842	-9.1587E-05	0.08344	4.5374E-05	543.7950100865851	38.262	1.7968	38.262	37.98	39.777	0					97	64	2	0	0	0	0.073499	1	8078	8078		68.76	38.919	1	413060			17975	1567	10140	10141	22820	22820					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7955322265625	2	543.795132	1085.57571	0.72874	0.00039629	-0.040626	-2.2092E-05	0.68811	0.00037419	543.7959290548541	36.236	2.1301	36.318	35.71	37.84	0.082359					297	77	6	0	0	0	1.4498E-07	12	7269	7269;7319;7371;7419;7464;7514;7555;7564;7611;7654;7700;7767		174.48	102.56	1	148540000			17976	1567	10140	10141	22821;22822;22823;22824;22825;22826;22827;22828;22829;22830;22831;22832	22821					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8187255859375	2	543.795132	1085.57571	0.57162	0.00031085	-0.45753	-0.0002488	0.11409	6.2042E-05	543.7948889757163	38.026	1.6465	38.117	38.042	39.689	0.090881					91	59	2	0	0	0	0.20521	1	8276	8276		30.703	9.1665	1	411290			17977	1567	10140	10141	22833	22833					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.7964477539062	2	543.795132	1085.57571	0.92929	0.00050534	-0.22404	-0.00012183	0.70525	0.00038351	543.7958760499411	36.199	2.0579	36.285	35.698	37.756	0.08625					284	74	5	0	0	0	4.9382E-11	13	7355	7262;7307;7355;7361;7403;7447;7496;7547;7561;7605;7659;7682;7728		187.14	108.41	1	133340000			17978	1567	10140	10141	22834;22835;22836;22837;22838;22839;22840;22841;22842;22843;22844;22845;22846	22836					0.03634609757477847
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.78271484375	2	543.795132	1085.57571	0.64768	0.00035221	-0.59664	-0.00032445	0.051042	2.7756E-05	543.794735081882	38.395	1.8856	38.493	37.981	39.866	0.097527					111	67	2	0	0	0	0.059984	1	8018	8018		73.196	29.424	1	358720			17979	1567	10140	10141	22847	22847					0.03634609757477847
KFIETSAAL	9	Unmodified	_KFIETSAAL_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.276611328125	2	490.276575	978.538597	0.27333	0.00013401	0.23661	0.00011601	0.50995	0.00025001	490.276553425012	43.787	0.59823	43.787	43.545	44.143	0					43	21	3	0	0	0	0.015924	1	9661	9661		70.332	39.695	1	725870			17980	6097	10141	10142	22848	22848					0.04846938211710494
KFIETSAAL	9	Unmodified	_KFIETSAAL_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.27655029296875	2	490.276575	978.538597	0.40985	0.00020094	-0.26354	-0.00012921	0.14631	7.1732E-05	490.27633551870315	43.598	0.58586	43.682	43.434	44.02	0.083996					45	21	3	0	0	0	0.20381	1	9575	9575		29.841	15.935	1	895560			17981	6097	10141	10142	22849	22849					0.04846938211710494
KFIETSAAL	9	Unmodified	_KFIETSAAL_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	490.276575	978.538597	0.37611	0.0001844	-0.041653	-2.0422E-05	0.33445	0.00016397	490.27641447177166	43.658	0.54171	43.735	43.483	44.024	0.077515	0.00045179	3.717E-06	NaN	70.332	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	761890			17982	6097	10141	10142							0.04846938211710494
KFILSVFSF	9	Unmodified	_KFILSVFSF_					0	0	0			REV__ENST00000578010.1_1_18:9550007-9550464:-|nuORF	REV__ENST00000578010.1_1_18:9550007-9550464:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2954711914062	2	544.312961	1086.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.019	1	35.096	34.596	35.596	0.077377								0	0	0	0.2362	1	6961	6961		10.824	0.75	1		+		17983	22465	10142	10143	22850	22850					0.07152692005138306
KFINVKAHHF	10	Unmodified	_KFINVKAHHF_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.2096252441406	3	414.236497	1239.68766	-0.15144	-6.273E-05	-0.77171	-0.00031967	-0.92315	-0.0003824	414.2361203561052	26.396	0.76292	26.396	26.078	26.841	0					62	26	3	0	0	0	0.27655	1	4340	4340		30.703	11.077	1	366290			17984	6752	10143	10144	22851	22851					0.07740508625101938
KFINVKAHHF	10	Unmodified	_KFINVKAHHF_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2095642089844	3	414.236497	1239.68766	0.18213	7.5445E-05	-0.8216	-0.00034033	-0.63947	-0.00026489	414.2359587021928	26.365	0.75869	26.327	26.037	26.795	-0.038671					60	26	3	0	0	0	0.27655	1	4363	4363		30.703	23.226	1	396050			17985	6752	10143	10144	22852	22852					0.07740508625101938
KFINVKAHHF	10	Unmodified	_KFINVKAHHF_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.2096252441406	3	414.236497	1239.68766	0.35788	0.00014825	-0.68564	-0.00028402	-0.32777	-0.00013577	414.23581908996033	26.525	1.2949	26.503	26.013	27.307	-0.022238					82	45	3	0	0	0	0.26049	1	4364	4364		35.612	28.003	1	413130			17986	6752	10143	10144	22853	22853					0.07740508625101938
KFIQGNWGKF	10	Unmodified	_KFIQGNWGKF_					0	0	0			REV__nc|ENSG00000171502|Q17RW2-2|COL24A1	REV__nc|ENSG00000171502|Q17RW2-2|COL24A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.51434326171875	3	408.888986	1223.64513	-0.33364	-0.00013642	1.6501	0.0006747	1.3164	0.00053827	408.8894432289555	35.284	0.904	35.359	35.097	36.001	0.075306					58	32	3	0	0	0	0.3179	1	6999	6999		8.9762	5.1303	1	331000	+		17987	17646	10144	10145	22854	22854					0.04225113496886479
KFISTSLLL	9	Unmodified	_KFISTSLLL_					0	0	0		ENST00000506590.1_1_4:78527019-78531849:+|nuORF;ENSG00000156234|ENST00000682537|CXCL13	ENST00000506590.1_1_4:78527019-78531849:+|nuORF	ENST00000506590.1_1_4:78527019-78531849:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.3183898925781	2	511.318243	1020.62193	0.15549	7.9506E-05	0.4568	0.00023357	0.61229	0.00031308	511.3183805809085	64.962	1.3687	64.962	64.699	66.068	0					112	49	3	0	0	0	0.011693	1	16177	16177		76.825	29.076	1	4492900			17988	5226	10145	10146	22855	22855					0.11244674659576503
KFISTSLLL	9	Unmodified	_KFISTSLLL_					0	0	0		ENST00000506590.1_1_4:78527019-78531849:+|nuORF;ENSG00000156234|ENST00000682537|CXCL13	ENST00000506590.1_1_4:78527019-78531849:+|nuORF	ENST00000506590.1_1_4:78527019-78531849:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.3184509277344	2	511.318243	1020.62193	0.1779	9.0966E-05	0.44389	0.00022697	0.62179	0.00031793	511.31838346634214	64.879	1.5129	64.968	64.684	66.197	0.088882					138	55	3	0	0	0	0.017549	1	16142	16142		67.838	27.888	1	5106800			17989	5226	10145	10146	22856	22856					0.11244674659576503
KFISTSLLL	9	Unmodified	_KFISTSLLL_					0	0	0		ENST00000506590.1_1_4:78527019-78531849:+|nuORF;ENSG00000156234|ENST00000682537|CXCL13	ENST00000506590.1_1_4:78527019-78531849:+|nuORF	ENST00000506590.1_1_4:78527019-78531849:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	511.318243	1020.62193	0.023142	1.1833E-05	0.61629	0.00031512	0.63943	0.00032695	511.31846257554224	65.005	1.3449	64.994	64.69	66.034	-0.01133	0.019419	0.00011308	NaN	76.825	123	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4627900			17990	5226	10145	10146							0.11244674659576503
KFKHFLLNVL	10	Unmodified	_KFKHFLLNVL_					0	0	0			REV__ENST00000534963.5_1_11:61131784-61133703:+|nuORF	REV__ENST00000534963.5_1_11:61131784-61133703:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.88861083984375	3	420.260531	1257.75976	-0.27786	-0.00011677	-2.0529	-0.00086277	-2.3308	-0.00097954	420.25937128613594	14.145	0.17551	14.04	13.903	14.079	-0.10466					7	5	2	0	0	0	0.32165	1	626	626		0.69767	0.60282	1	38879	+		17991	16467	10146	10147	22857	22857					0.14119422978842522
KFKHIRSREA	10	Unmodified	_KFKHIRSREA_					0	0	0		DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant;ENSG00000197653|ENST00000673944|DNAH10	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.82861328125	2	636.370195	1270.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.41	1	100.45	99.947	100.95	0.038994								0	0	0	0.37807	1	26831	26831		2.9952	0.49676	1				17992	267	10147	10148	22858	22858					0.1013039453980582
KFKYLIDH	8	Unmodified	_KFKYLIDH_					0	0	0		ENSG00000162779|ENST00000367618|AXDND1	ENSG00000162779|ENST00000367618|AXDND1	ENSG00000162779|ENST00000367618|AXDND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2999877929688	2	532.300384	1062.58622	0.13985	7.4444E-05	-0.22378	-0.00011912	-0.083928	-4.4675E-05	532.2999736448803	12.448	0.45457	12.448	12.245	12.699	0					31	14	5	0	0	0	0.45307	1	136	136		4.756	0	1	130780			17993	5617	10148	10149	22859	22859					0.05742637202547485
KFLALKGPSF	10	Unmodified	_KFLALKGPSF_					0	0	0		nc|ENSG00000172554|Q9NY99-2|SNTG2;ENSG00000172554|ENST00000308624|SNTG2	nc|ENSG00000172554|Q9NY99-2|SNTG2	nc|ENSG00000172554|Q9NY99-2|SNTG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8302001953125	2	554.331685	1106.64882	0.4951	0.00027445	-0.49188	-0.00027267	0.0032161	1.7828E-06	554.3314613260915	82.77	0.68713	82.77	82.436	83.123	0					42	25	2	0	0	0	0.31794	1	21530	21530		8.1555	8.1555	1	601960			17994	6647	10149	10150	22860	22860					0.09975783270760985
KFLDAGHKLNF	11	Unmodified	_KFLDAGHKLNF_					0	0	0		ENST00000434494.5_1_15:44038867-44063413:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENST00000434494.5_1_15:44038867-44063413:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.5712585449219	3	430.571545	1288.69281	-0.16979	-7.3108E-05	-0.14445	-6.2198E-05	-0.31425	-0.00013531	430.5714419209077	42.815	0.76451	42.815	42.517	43.281	0					70	27	3	0	0	0	0.0016763	2	9329	9329;9379		87.442	59.209	1	1774500			17995	6140	10150	10151	22861;22862	22861					0.060007676971054025
KFLDAGHKLNF	11	Unmodified	_KFLDAGHKLNF_					0	0	0		ENST00000434494.5_1_15:44038867-44063413:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENST00000434494.5_1_15:44038867-44063413:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.5711975097656	3	430.571545	1288.69281	-0.13573	-5.8441E-05	-0.36881	-0.0001588	-0.50454	-0.00021724	430.5713626931012	42.425	0.79202	42.51	42.211	43.003	0.085197					70	28	3	0	0	0	0.00077113	2	9224	9224;9273		100.07	71.833	1	2128300			17996	6140	10150	10151	22863;22864	22863					0.060007676971054025
KFLDAGHKLNF	11	Unmodified	_KFLDAGHKLNF_					0	0	0		ENST00000434494.5_1_15:44038867-44063413:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENST00000434494.5_1_15:44038867-44063413:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.5711975097656	3	430.571545	1288.69281	-0.084292	-3.6294E-05	-0.36556	-0.0001574	-0.44985	-0.00019369	430.57135360807445	42.382	0.83729	42.474	42.177	43.015	0.091362					76	29	3	0	0	0	0.0014045	2	9195	9195;9243		91.233	74.667	1	1946200			17997	6140	10150	10151	22865;22866	22865					0.060007676971054025
KFLDTALSF	9	Unmodified	_KFLDTALSF_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2846069335938	2	521.2844	1040.55425	0.4621	0.00024088	0.92904	0.00048429	1.3911	0.00072518	521.2847978827622	66.78	0.96725	66.78	66.482	67.45	0					86	33	4	0	0	0	0.00045155	2	16728	16728;16774		129.77	44.5	1	1390900			17998	4431	10151	10152	22867;22868	22867					0.035592247287468126
KFLDTALSF	9	Unmodified	_KFLDTALSF_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2846069335938	2	521.2844	1040.55425	0.38239	0.00019933	1.0543	0.00054961	1.4367	0.00074894	521.2848091774207	66.677	0.86604	66.761	66.494	67.36	0.083832					88	30	4	0	0	0	0.0013683	2	16685	16685;16737		118.07	43.139	1	1243200			17999	4431	10151	10152	22869;22870	22869					0.035592247287468126
KFLDTALSF	9	Unmodified	_KFLDTALSF_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2845458984375	2	521.2844	1040.55425	0.23181	0.00012084	1.1367	0.00059254	1.3685	0.00071338	521.2848790677086	66.823	0.88493	66.81	66.511	67.396	-0.013588					74	30	3	0	0	0	0.0019475	2	16719	16719;16769		110.67	35.746	1	1420500			18000	4431	10151	10152	22871;22872	22871					0.035592247287468126
KFLEQVHQL	9	Unmodified	_KFLEQVHQL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.7844848632812	2	571.321848	1140.62914	0.24261	0.00013861	1.0717	0.00061231	1.3143	0.00075091	571.3224239234562	39.541	0.93386	39.64	39.212	40.146	0.099407					69	33	3	0	0	0	0.0063009	1	8323	8323		99.755	35.795	1	762130			18001	2643	10152	10153	22873	22873					0.06445407260002867
KFLFIYCLV	9	Unmodified	_KFLFIYCLV_					0	0	0		ENSG00000072315|ENST00000262839|TRPC5;nc|ENSG00000133107|Q9UBN4-6|TRPC4;nc|ENSG00000133107|Q9UBN4-4|TRPC4;nc|ENSG00000133107|Q9UBN4-3|TRPC4;nc|ENSG00000133107|Q9UBN4-2|TRPC4;ENSG00000133107|ENST00000379705|TRPC4;nc|ENSG00000133107|Q9UBN4-5|TRPC4	ENSG00000072315|ENST00000262839|TRPC5	ENSG00000072315|ENST00000262839|TRPC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.32421875	2	573.325014	1144.63547	-0.17119	-9.8146E-05	-0.71106	-0.00040767	-0.88224	-0.00050581	573.324683131359	101.35	1.269	101.35	100.8	102.07	0					264	173	2	0	0	0	0.34374	1	27017	27017		2.3027	0	1	217570			18002	978	10153	10154	22874	22874					0.06894209167126064
KFLFLEPF	8	Unmodified	_KFLFLEPF_					0	0	0			REV__ENSG00000183439|ENST00000710271|TRIM61	REV__ENSG00000183439|ENST00000710271|TRIM61	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7950439453125	2	520.794404	1039.57425	0.44787	0.00023325	-0.39241	-0.00020437	0.055455	2.8881E-05	520.7939441966256	74.23	0.87495	74.199	73.881	74.756	-0.030655					44	30	2	0	0	0	0.43043	1	19092	19092		12.532	1.4171	1	433190	+		18003	18262	10154	10155	22875	22875					0.0560502045937028
KFLKRMKKKR	10	Unmodified	_KFLKRMKKKR_					0	0	0			REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.9677734375	3	454.967465	1361.88056	0.27597	0.00012556	0.38189	0.00017375	0.65786	0.0002993	454.96755425095927	36.363	1.31	36.363	36.142	37.452	0					182	46	5	0	0	0	0.41469	4	7354	7354;7402;7448;7499		0.77653	0.77653	1	2606800	+		18004	22289	10155	10156	22876;22877;22878;22879	22876					0.21409927420631902
KFLKRMKKKR	10	Unmodified	_KFLKRMKKKR_					0	0	0			REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.9675598144531	3	454.967465	1361.88056	0.25239	0.00011483	0.33305	0.00015153	0.58544	0.00026635	454.96750721746	37.869	1.7072	37.869	37.397	39.104	0					182	60	4	0	0	0	0.41805	3	7782	7782;7831;7882		0.15932	0.15932	1	2259100	+		18005	22289	10155	10156	22880;22881;22882	22880					0.21409927420631902
KFLKRMKKKR	10	Unmodified	_KFLKRMKKKR_					0	0	0			REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.3020935058594	3	454.967465	1361.88056	0.27597	0.00012556	0.38189	0.00017375	0.65786	0.0002993	454.96755425095927	36.363	1.31	36.363	36.142	37.452	0					182	46	5	0	0	0	0.32174	1	7402	7402		0.15932	0.15932	1	2606800	+		18006	22289	10155	10156	22883	22883					0.21409927420631902
KFLKRMKKKR	10	Unmodified	_KFLKRMKKKR_					0	0	0			REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.96759033203125	3	454.967465	1361.88056	0.32302	0.00014696	0.36561	0.00016634	0.68864	0.00031331	454.96752746122104	36.217	1.3175	36.299	36.09	37.407	0.082355					142	47	4	0	0	0	0.41469	3	7373	7323;7373;7424		0.77653	0.77653	1	3598100	+		18007	22289	10155	10156	22884;22885;22886	22885					0.21409927420631902
KFLKRMKKKR	10	Unmodified	_KFLKRMKKKR_					0	0	0			REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.3020935058594	3	454.967465	1361.88056	0.32302	0.00014696	0.36561	0.00016634	0.68864	0.00031331	454.96752746122104	36.217	1.3175	36.299	36.09	37.407	0.082355					142	47	4	0	0	0	0.32174	1	7323	7323		0.15932	0.15932	1	3598100	+		18008	22289	10155	10156	22887	22887					0.21409927420631902
KFLKRMKKKR	10	Unmodified	_KFLKRMKKKR_					0	0	0			REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.9677429199219	3	454.967465	1361.88056	0.50712	0.00023072	0.16188	7.3652E-05	0.66901	0.00030438	454.96743700863794	36.263	1.3562	36.35	36.085	37.441	0.08625					156	48	4	0	0	0	0.41469	3	7363	7311;7363;7416		0.77653	0.77653	1	2398600	+		18009	22289	10155	10156	22888;22889;22890	22889					0.21409927420631902
KFLKRMKKKR	10	Unmodified	_KFLKRMKKKR_					0	0	0			REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.9487609863281	3	454.967465	1361.88056	0.50712	0.00023072	0.16188	7.3652E-05	0.66901	0.00030438	454.96743700863794	36.263	1.3562	36.35	36.085	37.441	0.08625					156	48	4	0	0	0	0.32174	1	7642	7642		0.15932	0.15932	1	2398600	+		18010	22289	10155	10156	22891	22891					0.21409927420631902
KFLKRMKKKR	10	Unmodified	_KFLKRMKKKR_					0	0	0			REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2432861328125	3	454.967465	1361.88056	0.18416	8.3785E-05	0.84833	0.00038596	1.0325	0.00046975	455.30232968040195	39.541	1.1566	39.641	39.017	40.173	0.099407					60	41	2	0	0	0	0.32174	1	8315	8315		0.15932	0.064481	1	185630	+		18011	22289	10155	10156	22892	22892					0.21409927420631902
KFLKRMKKKR	10	Unmodified	_KFLKRMKKKR_					0	0	0			REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	454.967465	1361.88056	-0.1775	-8.0755E-05	1.0249	0.00046628	0.84737	0.00038552	455.30243871758125	39.282	1.09	39.282	38.988	40.078	0	-0.17916	0.00010724	NaN	0.15932	66	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229220	+		18012	22289	10155	10156							0.21409927420631902
KFLKRMKKKR	10	Unmodified	_KFLKRMKKKR_					0	0	0			REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	454.967465	1361.88056	0.23135	0.00010526	0.34865	0.00015862	0.57999	0.00026388	454.9675080170135	37.898	2.1615	37.989	37.197	39.358	0.090881	0.048808	-3.1052E-05	NaN	0.15932	202	78	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2086400	+		18013	22289	10155	10156							0.21409927420631902
KFLKRMKKKR	10	Unmodified	_KFLKRMKKKR_					0	0	0			REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	REV__ENST00000559305.5_1_15:59191033-59209159:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	454.967465	1361.88056	0.13799	6.2779E-05	0.45306	0.00020613	0.59105	0.00026891	454.96754931679396	37.866	1.7305	37.963	37.368	39.098	0.097527	0.022713	0.00011146	NaN	0.15932	197	62	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2221600	+		18014	22289	10155	10156							0.21409927420631902
KFLTSEKL	8	Unmodified	_KFLTSEKL_					0	0	0		THOC1|p.S313Tfs*32|1|0.19|ENSG00000079134|chr18:226879-226882|TCAC/-|frameshift_variant;nc|ENSG00000079134|Q96FV9-2|THOC1;ENST00000578529.5_1_18:214628-260326:-|nuORF;ENSG00000079134|ENST00000261600|THOC1	THOC1|p.S313Tfs*32|1|0.19|ENSG00000079134|chr18:226879-226882|TCAC/-|frameshift_variant	THOC1|p.S313Tfs*32|1|0.19|ENSG00000079134|chr18:226879-226882|TCAC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2764892578125	2	483.286943	964.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.165	1	59.165	58.665	59.665	0								0	0	0	0.34957	1	14389	14389		14.838	2.3067	1				18015	1125	10156	10157	22893	22893					0.07563528591379054
KFMGVQMETF	10	2 Oxidation (M)	_KFM(Oxidation (M))GVQM(Oxidation (M))ETF_		KFM(1)GVQM(1)ETF		KFM(85)GVQM(85)ETF	0	0	2		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000561086.1_1_15:91040446-91043337:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.2830810546875	2	625.283217	1248.55188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.571	1	41.571	41.071	42.071	0								0	0	0	0.0036854	1	8971	8971		84.522	54.682	1				18016	4321	10157	10158	22894	22894		548;549			-0.06245315062847112
KFMGVQMETF	10	2 Oxidation (M)	_KFM(Oxidation (M))GVQM(Oxidation (M))ETF_		KFM(1)GVQM(1)ETF		KFM(100)GVQM(100)ETF	0	0	2		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000561086.1_1_15:91040446-91043337:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.2831420898438	2	625.283217	1248.55188	-0.060108	-3.7585E-05	0.073365	4.5874E-05	0.013257	8.2892E-06	625.2833525250155	41.216	0.42743	41.306	41.055	41.482	0.090248					38	15	3	0	0	0	0.0081456	1	8863	8863		100.71	65.777	1	868570			18017	4321	10157	10158	22895	22895		548;549			-0.06245315062847112
KFMIGMSLF	9	Unmodified	_KFMIGMSLF_					0	0	0		LTR34_dup255|chr21:42584694-42585328:-|2.173855430469935|0.2376472074410829|3.19|532.0|31|2|anti-sense	LTR34_dup255|chr21:42584694-42585328:-|2.173855430469935|0.2376472074410829|3.19|532.0|31|2|anti-sense	LTR34_dup255|chr21:42584694-42585328:-|2.173855430469935|0.2376472074410829|3.19|532.0|31|2|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2689819335938	2	537.279749	1072.54494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.395	1	50.395	49.895	50.895	0								0	0	0	0.19013	1	11685	11685		25.399	7.0262	1				18018	12517	10158	10159	22896	22896					0.01157416847240711
KFMLKDLWK	9	Unmodified	_KFMLKDLWK_					0	0	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.23052978515625	3	403.566855	1207.67874	-0.39223	-0.00015829	-0.12965	-5.2321E-05	-0.52187	-0.00021061	403.5666166099497	14.875	0.7057	14.875	14.448	15.154	0					60	24	4	0	0	0	0.2615	1	801	801		2.4985	2.4985	1	90323	+		18019	13720	10159	10160	22897	22897					0.08320398944420049
KFMPVSSLI	9	Oxidation (M)	_KFM(Oxidation (M))PVSSLI_		KFM(1)PVSSLI		KFM(58)PVSSLI	0	0	1		ENST00000577263.5_1_17:61903352-61904262:-|nuORF;ENSG00000108592|ENST00000427159|FTSJ3	ENST00000577263.5_1_17:61903352-61904262:-|nuORF	ENST00000577263.5_1_17:61903352-61904262:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2887573242188	2	519.288628	1036.5627	0.70687	0.00036707	-0.040668	-2.1119E-05	0.6662	0.00034595	519.2884569070276	54.492	1.0603	54.492	53.914	54.974	0					82	38	4	0	0	0	0.067563	1	12955	12955		57.722	13.864	1	2081900			18020	2199	10160	10161	22898	22898		271			0.045884553737323586
KFMPVSSLI	9	Oxidation (M)	_KFM(Oxidation (M))PVSSLI_		KFM(1)PVSSLI		KFM(58)PVSSLI	0	0	1		ENST00000577263.5_1_17:61903352-61904262:-|nuORF;ENSG00000108592|ENST00000427159|FTSJ3	ENST00000577263.5_1_17:61903352-61904262:-|nuORF	ENST00000577263.5_1_17:61903352-61904262:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2887573242188	2	519.288628	1036.5627	0.59966	0.0003114	0.019408	1.0078E-05	0.61907	0.00032147	519.2885087969568	54.434	0.96009	54.497	53.93	54.89	0.063202					82	35	4	0	0	0	0.037019	1	12917	12917		57.722	19.748	1	1984800			18021	2199	10160	10161	22899	22899		271			0.045884553737323586
KFNLTYKKE	9	Unmodified	_KFNLTYKKE_					0	0	0		ENST00000521583.5_1_5:154238316-154247291:+|nuORF	ENST00000521583.5_1_5:154238316-154247291:+|nuORF	ENST00000521583.5_1_5:154238316-154247291:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8086547851562	2	585.829506	1169.64446	-0.99859	-0.000585	0.41295	0.00024192	-0.58564	-0.00034309	585.829583749849	35.013	0.47466	35.088	34.814	35.288	0.075306					28	16	3	0	0	0	0.24787	1	6921	6921		15.248	2.206	1	177170			18022	11491	10161	10162	22900	22900					0.06642274057162467
KFNRLLEDF	9	Unmodified	_KFNRLLEDF_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.E750Dfs*31|1|0.27|ENSG00000101972|chrX:124066420-124066430|AAAGCAGCTCT/-|frameshift_variant;STAG2|p.L995*|1|0.54|ENSG00000101972|chrX:124083478-124083478|T/-|frameshift_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8068237304688	2	591.319306	1180.62406	0.39333	0.00023258	1.9823	0.0011722	2.3756	0.0014047	591.3207640935956	43.255	0.30172	43.255	43.087	43.388	0					16	10	2	0	0	0	0.28674	1	9504	9504		10.824	0.67336	1	126650			18023	1732	10162	10163	22901	22901					0.040971033973846716
KFNRLLEDF	9	Unmodified	_KFNRLLEDF_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.E750Dfs*31|1|0.27|ENSG00000101972|chrX:124066420-124066430|AAAGCAGCTCT/-|frameshift_variant;STAG2|p.L995*|1|0.54|ENSG00000101972|chrX:124083478-124083478|T/-|frameshift_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	591.319306	1180.62406	0.53318	0.00031528	1.3484	0.00079733	1.8816	0.0011126	591.3205383532953	43.134	0.24409	43.212	43.075	43.319	0.077515	0.0029795	-0.00059329	NaN	10.824	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163740			18024	1732	10162	10163							0.040971033973846716
KFNRLLEDF	9	Unmodified	_KFNRLLEDF_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.E750Dfs*31|1|0.27|ENSG00000101972|chrX:124066420-124066430|AAAGCAGCTCT/-|frameshift_variant;STAG2|p.L995*|1|0.54|ENSG00000101972|chrX:124083478-124083478|T/-|frameshift_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	591.319306	1180.62406	0.32053	0.00018954	2.0235	0.0011966	2.3441	0.0013861	591.3208359331412	43.076	0.34847	43.16	43.061	43.41	0.083996	-0.048933	0.00020517	NaN	10.824	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171110			18025	1732	10162	10163							0.040971033973846716
KFPELNYQL	9	Unmodified	_KFPELNYQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;ENST00000478276.1_1_17:40481763-40483548:-|nuORF	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.308837890625	2	576.308406	1150.60226	0.27568	0.00015888	0.16311	9.4001E-05	0.43879	0.00025288	576.3083855486226	62.326	1.0662	62.326	61.945	63.011	0					107	39	4	0	0	0	0.0010968	4	15374	15327;15374;15479;15525		121.53	77.676	1	913180			18026	6287	10163	10164	22902;22903;22904;22905	22903					0.032982986488150345
KFPELNYQL	9	Unmodified	_KFPELNYQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;ENST00000478276.1_1_17:40481763-40483548:-|nuORF	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3086547851562	2	576.308406	1150.60226	0.31175	0.00017967	0.10991	6.3343E-05	0.42166	0.00024301	576.3083047332645	62.28	1.0915	62.377	61.952	63.043	0.096985					97	39	3	0	0	0	0.001957	5	15336	15288;15336;15431;15486;15537		110.55	66.694	1	970550			18027	6287	10163	10164	22906;22907;22908;22909;22910	22907					0.032982986488150345
KFPELNYQL	9	Unmodified	_KFPELNYQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;ENST00000478276.1_1_17:40481763-40483548:-|nuORF	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.30859375	2	576.308406	1150.60226	0.26299	0.00015157	0.23977	0.00013818	0.50276	0.00028974	576.3083900345551	62.285	1.1156	62.277	61.878	62.994	-0.0085526					98	41	3	0	0	0	0.0016712	4	15305	15305;15353;15459;15506		114.2	66.453	1	1090200			18028	6287	10163	10164	22911;22912;22913;22914	22911					0.032982986488150345
KFPQFLPKF	9	Unmodified	_KFPQFLPKF_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;ENST00000463793.1_1_1:234546169-234556549:-|nuORF	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.30859375	2	576.334227	1150.6539	0.11659	6.7195E-05	-0.1669	-9.6188E-05	-0.050306	-2.8993E-05	576.3340390201089	62.081	0.3991	62.072	61.878	62.278	-0.0085526					22	14	2	0	0	0	0.2451	1	15305	15305		15.847	4.2069	1	148260			18029	742	10164	10165	22915	22915					0.08460087133380512
KFPSVVQKQ	9	Unmodified	_KFPSVVQKQ_					0	0	0			REV__ENST00000392722.3_1_X:100792574-100792805:-|nuORF	REV__ENST00000392722.3_1_X:100792574-100792805:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.8087158203125	2	530.811116	1059.60768	0.49788	0.00026428	2.3976	0.0012727	2.8955	0.0015369	530.812410128384	20.171	0.73755	20.055	19.579	20.316	-0.11592					54	26	3	0	0	0	0.25323	1	2393	2393		10.074	0	1	277440	+		18030	20597	10165	10166	22916	22916					0.08026022231297247
KFQNGIIVI	9	Unmodified	_KFQNGIIVI_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7667846679688	2	516.316035	1030.61752	0.33323	0.00017205	0.22941	0.00011845	0.56264	0.0002905	516.3159545289368	37.374	0.73718	37.461	37.218	37.955	0.08741					57	26	3	0	0	0	0.25526	1	7840	7840		7.9102	1.187	1	457820			18031	8296	10166	10167	22917	22917					0.10343210236646883
KFRFLSNWY	9	Unmodified	_KFRFLSNWY_					0	0	0			REV__ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	REV__ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.88861083984375	3	420.888986	1259.64513	-0.30895	-0.00013003	0.027966	1.1771E-05	-0.28098	-0.00011826	420.8888031618151	14.13	0.26022	14.025	13.845	14.105	-0.10466					15	8	2	0	0	0	0.33276	1	626	626		2.2828	0	1	88104	+		18032	16519	10167	10168	22918	22918					0.025691134969065388
KFRIKSPFP	9	Unmodified	_KFRIKSPFP_					0	0	0		THSD1|p.D742Vfs*6|1|0.1|ENSG00000136114|chr13:52377745-52377745|T/-|frameshift_variant;nc|ENSG00000136114|Q9NS62-2|THSD1;ENSG00000136114|ENST00000258613|THSD1	THSD1|p.D742Vfs*6|1|0.1|ENSG00000136114|chr13:52377745-52377745|T/-|frameshift_variant	THSD1|p.D742Vfs*6|1|0.1|ENSG00000136114|chr13:52377745-52377745|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.765380859375	2	560.337301	1118.66005	-0.38661	-0.00021663	0.68554	0.00038413	0.29893	0.0001675	560.3376163618505	34.44	0.67422	34.44	34.193	34.868	0					53	23	3	0	0	0	0.26031	1	6874	6874		3.5965	0	1	512130			18033	3943	10168	10169	22919	22919					0.10546605364902462
KFRIKSPFP	9	Unmodified	_KFRIKSPFP_					0	0	0		THSD1|p.D742Vfs*6|1|0.1|ENSG00000136114|chr13:52377745-52377745|T/-|frameshift_variant;nc|ENSG00000136114|Q9NS62-2|THSD1;ENSG00000136114|ENST00000258613|THSD1	THSD1|p.D742Vfs*6|1|0.1|ENSG00000136114|chr13:52377745-52377745|T/-|frameshift_variant	THSD1|p.D742Vfs*6|1|0.1|ENSG00000136114|chr13:52377745-52377745|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7650146484375	2	560.337301	1118.66005	-0.023333	-1.3074E-05	0.25768	0.00014439	0.23434	0.00013131	560.3374285195907	34.246	0.64681	34.312	34.071	34.718	0.066704					52	22	3	0	0	0	0.26031	1	6841	6841		3.5965	0	1	515000			18034	3943	10168	10169	22920	22920					0.10546605364902462
KFRRLMILY	9	Unmodified	_KFRRLMILY_					0	0	0			REV__nc|ENSG00000133401|O15018-2|PDZD2	REV__nc|ENSG00000133401|O15018-2|PDZD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3728637695312	2	620.373361	1238.73217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.342	1	95.425	94.925	95.925	0.082779								0	0	0	0.26334	1	25464	25464		2.0598	0.40713	1		+		18035	15622	10169	10170	22921	22921					0.12235196446954433
KFRRNPLS	8	Unmodified	_KFRRNPLS_					0	0	0			REV__ENSG00000099942|ENST00000354336|CRKL	REV__ENSG00000099942|ENST00000354336|CRKL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.31182861328125	2	509.30125	1016.58795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.202	1	84.202	83.702	84.702	0								0	0	0	0.25356	1	22062	22062		36.044	1.1121	1		+		18036	14143	10170	10171	22922	22922					0.08031691011183284
KFRSNKQYR	9	Unmodified	_KFRSNKQYR_					0	0	0		nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1	nc|ENSG00000133424|O95461-2|LARGE1	nc|ENSG00000133424|O95461-2|LARGE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.8880615234375	3	409.563273	1225.66799	0.093409	3.8257E-05	-1.1628	-0.00047625	-1.0694	-0.00043799	409.56280119213073	24.096	0.48499	24.057	23.793	24.278	-0.038927					33	16	3	0	0	0	0.34243	1	3680	3680		2.4985	0.24576	1	58496			18037	3711	10171	10172	22923	22923					0.06418132614362548
KFSDSVKSTF	10	Unmodified	_KFSDSVKSTF_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.2958984375	2	573.295496	1144.57644	-0.067882	-3.8916E-05	0.90604	0.00051943	0.83816	0.00048051	573.7977164026531	34.382	0.42567	34.382	34.074	34.5	0					25	14	2	0	0	0	0.36698	1	6803	6803		9.544	5.9475	1	131670			18038	8655	10172	10173	22924	22924					0.00993404406517584
KFSDSVKSTF	10	Unmodified	_KFSDSVKSTF_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.296142578125	2	573.295496	1144.57644	0.20697	0.00011866	-0.30831	-0.00017675	-0.10134	-5.8098E-05	573.2952930982667	34.131	0.44764	34.198	34.04	34.487	0.06636					24	15	2	0	0	0	0.35961	1	6744	6744		10.899	6.0019	1	144390			18039	8655	10172	10173	22925	22925					0.00993404406517584
KFSDSVKSTF	10	Unmodified	_KFSDSVKSTF_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.2960205078125	2	573.295496	1144.57644	0.05407	3.0998E-05	0.056243	3.2244E-05	0.11031	6.3242E-05	573.2954014719847	34.157	0.55617	34.224	34.047	34.603	0.066704					28	19	2	0	0	0	0.35961	1	6716	6716		10.899	6.0019	1	150850			18040	8655	10172	10173	22926	22926					0.00993404406517584
KFSIDIETF	9	Unmodified	_KFSIDIETF_					0	0	0		PITPNM2|p.Y115del|1|0.37|ENSG00000090975|chr12:123012683-123012685|ATA/-|inframe_deletion;ENST00000451868.2_1_12:123484929-123519149:-|nuORF;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2	PITPNM2|p.Y115del|1|0.37|ENSG00000090975|chr12:123012683-123012685|ATA/-|inframe_deletion	PITPNM2|p.Y115del|1|0.37|ENSG00000090975|chr12:123012683-123012685|ATA/-|inframe_deletion	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.288330078125	2	550.28714	1098.55973	0.51249	0.00028202	0.419	0.00023057	0.93149	0.00051259	550.2876074371104	38.531	0.89603	38.628	38.202	39.098	0.097527					122	31	6	0	0	0	0.17787	1	8127	8127		26.884	0	1	2749000			18041	1393	10173	10174	22927	22927					0.01438903520556778
KFSLFGDISV	10	Unmodified	_KFSLFGDISV_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2679443359375	2	556.802957	1111.59136	0.37947	0.00021129	-0.54068	-0.00030105	-0.16121	-8.9762E-05	556.8030193308732	57.048	0.32989	57.029	56.838	57.168	-0.019077					17	11	2	0	0	0	0.31401	1	13710	13710		14.405	1.3629	1	205750			18042	5953	10174	10175	22928	22928					0.040028962745282115
KFSNIVDKF	9	Unmodified	_KFSNIVDKF_					0	0	0		nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2767944335938	2	549.303124	1096.5917	0.34494	0.00018948	0.49183	0.00027016	0.83676	0.00045964	549.3031457293129	44.026	0.34803	44.026	43.932	44.28	0					15	12	2	0	0	0	0.1558	1	9753	9753		41.956	14.327	1	216780			18043	1677	10175	10176	22929	22929					0.04726315994366814
KFSNIVDKF	9	Unmodified	_KFSNIVDKF_					0	0	0		nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.303124	1096.5917	0.51403	0.00028236	-0.12916	-7.095E-05	0.38487	0.00021141	549.3027995909151	43.729	0.39138	43.813	43.604	43.995	0.083996	-0.1064	-0.00017552	NaN	45.74	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238620			18044	1677	10175	10176							0.04726315994366814
KFSNVTMLF	9	Oxidation (M)	_KFSNVTM(Oxidation (M))LF_		KFSNVTM(1)LF		KFSNVTM(170)LF	0	0	1		ENSG00000164116|ENST00000506455|GUCY1A1;nc|ENSG00000164116|Q02108-2|GUCY1A1	ENSG00000164116|ENST00000506455|GUCY1A1	ENSG00000164116|ENST00000506455|GUCY1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7838134765625	2	551.78371	1101.55287	0.45619	0.00025172	-0.68032	-0.00037539	-0.22413	-0.00012367	551.783601219867	58.382	2.0499	58.382	57.927	59.977	0					212	71	4	0	0	0	2.973E-07	6	14121	14121;14164;14212;14257;14312;14365		168.54	29.399	1	27034000			18045	5793	10176	10177	22930;22931;22932;22933;22934;22935	22930		685			0.006152673683345711
KFSNVTMLF	9	Oxidation (M)	_KFSNVTM(Oxidation (M))LF_		KFSNVTM(1)LF		KFSNVTM(140)LF	0	0	1		ENSG00000164116|ENST00000506455|GUCY1A1;nc|ENSG00000164116|Q02108-2|GUCY1A1	ENSG00000164116|ENST00000506455|GUCY1A1	ENSG00000164116|ENST00000506455|GUCY1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7837524414062	2	551.78371	1101.55287	0.43979	0.00024267	-0.73085	-0.00040327	-0.29105	-0.0001606	551.7835778842941	58.183	2.1397	58.269	57.812	59.952	0.085621					253	76	6	0	0	0	0.00010125	6	14059	14059;14106;14153;14165;14208;14259		140.63	40.834	1	26497000			18046	5793	10176	10177	22936;22937;22938;22939;22940;22941	22936		685			0.006152673683345711
KFSNVTMLF	9	Oxidation (M)	_KFSNVTM(Oxidation (M))LF_		KFSNVTM(1)LF		KFSNVTM(150)LF	0	0	1		ENSG00000164116|ENST00000506455|GUCY1A1;nc|ENSG00000164116|Q02108-2|GUCY1A1	ENSG00000164116|ENST00000506455|GUCY1A1	ENSG00000164116|ENST00000506455|GUCY1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.7840576171875	2	551.78371	1101.55287	0.71976	0.00039715	-0.9057	-0.00049975	-0.18595	-0.0001026	551.7834825061735	58.461	2.2872	58.446	58.008	60.295	-0.014267					218	81	4	0	0	0	2.5511E-05	4	14158	14158;14248;14292;14346		152.89	29.435	1	32715000			18047	5793	10176	10177	22942;22943;22944;22945	22942		685			0.006152673683345711
KFSPNTSQF	9	Unmodified	_KFSPNTSQF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3159790039062	2	528.261456	1054.50836	0.66403	0.00035078	0.81917	0.00043274	1.4832	0.00078351	528.2619387631784	36.671	0.50578	36.671	36.479	36.985	0					31	17	2	0	0	0	0.18022	1	7498	7498		37.075	21.227	1	254050			18048	5131	10177	10178	22946	22946					-0.016714204534764576
KFSPNTSQF	9	Unmodified	_KFSPNTSQF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3157958984375	2	528.261456	1054.50836	0.55313	0.0002922	0.78892	0.00041675	1.342	0.00070895	528.2619450810454	36.598	0.70711	36.685	36.435	37.142	0.08741					44	25	3	0	0	0	0.152	1	7450	7450		43.982	28.135	1	348920			18049	5131	10177	10178	22947	22947					-0.016714204534764576
KFSPNTSQF	9	Unmodified	_KFSPNTSQF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3161010742188	2	528.261456	1054.50836	0.94282	0.00049806	0.39499	0.00020866	1.3378	0.00070671	528.2617985598629	36.567	0.60245	36.66	36.458	37.06	0.093014					36	21	3	0	0	0	0.16826	1	7437	7437		40.725	19.188	1	351490			18050	5131	10177	10178	22948	22948					-0.016714204534764576
KFSPRPLKF	9	Unmodified	_KFSPRPLKF_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;BRWD1|p.D563Ifs*13|1|0.04|ENSG00000185658|chr21:39264655-39264658|AGTC/-|frameshift_variant	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.764892578125	2	560.337301	1118.66005	-0.28837	-0.00016159	0.50068	0.00028055	0.2123	0.00011896	560.3375238674225	34.279	0.6378	34.345	34.092	34.73	0.06636					56	22	3	0	0	0	0.26068	1	6858	6858		3.2813	0.70383	1	486620			18051	7548	10178	10179	22949	22949					0.10546605364902462
KFTPVASKF	9	Unmodified	_KFTPVASKF_					0	0	0		ENST00000446634.1_1_7:143080130-143081191:+|nuORF;nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.3328857421875	2	512.794935	1023.57532	0.12201	6.2566E-05	1.042	0.00053433	1.164	0.0005969	512.7951535007901	33.138	0.71745	33.193	32.903	33.621	0.054375					50	25	3	0	0	0	0.19888	1	6347	6347		32.037	11.584	1	784010			18052	5425	10179	10180	22950	22950					0.0644723482827203
KFTPVASKF	9	Unmodified	_KFTPVASKF_					0	0	0		ENST00000446634.1_1_7:143080130-143081191:+|nuORF;nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	ENST00000446634.1_1_7:143080130-143081191:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	512.794935	1023.57532	0.21711	0.00011133	0.52417	0.00026879	0.74127	0.00038012	512.79510724365	33.229	0.77245	33.229	32.955	33.728	0	0.026828	-0.00021917	NaN	32.037	58	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	616290			18053	5425	10179	10180							0.0644723482827203
KFVDAVPDI	9	Unmodified	_KFVDAVPDI_					0	0	0		ENSG00000111817|ENST00000644252|DSE	ENSG00000111817|ENST00000644252|DSE	ENSG00000111817|ENST00000644252|DSE	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2644958496094	2	502.276575	1002.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.029	1	88.029	87.529	88.529	0								0	0	0	0.24264	1	23236	23236		8.7454	0.15213	1				18054	2391	10180	10181	22951	22951					0.03742938211712499
KFVEHFLGIR	10	Unmodified	_KFVEHFLGIR_					0	0	0		ENST00000461745.5_2_3:77089448-77089580:+|nuORF	ENST00000461745.5_2_3:77089448-77089580:+|nuORF	ENST00000461745.5_2_3:77089448-77089580:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.54248046875	3	415.908269	1244.70298	-0.32148	-0.00013371	3.7194	0.0015469	3.3979	0.0014132	415.9100087525396	15.108	0.41862	15.108	14.9	15.319	0					21	14	2	0	0	0	0.32015	1	954	954		5.0475	2.9615	1	34341			18055	10749	10181	10182	22952	22952					0.09041375422316378
KFVETHPEF	9	Unmodified	_KFVETHPEF_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2852172851562	2	567.284931	1132.55531	0.37084	0.00021037	0.29264	0.00016601	0.66348	0.00037638	567.2850661948536	35.923	1.0347	35.923	35.665	36.7	0					97	37	4	0	0	0	1.6153E-16	3	7252	7252;7302;7389		208.15	158.21	1	4246300			18056	1435	10182	10183	22953;22954;22955	22953					-0.005665609023253637
KFVETHPEF	9	Unmodified	_KFVETHPEF_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2852172851562	2	567.284931	1132.55531	0.47768	0.00027098	0.14639	8.3046E-05	0.62407	0.00035402	567.2849504358591	35.804	1.4036	35.886	35.624	37.027	0.082359					102	50	4	0	0	0	4.8913000000000006E-24	4	7174	7174;7219;7268;7359		240.41	190.48	1	4122900			18057	1435	10182	10183	22956;22957;22958;22959	22956					-0.005665609023253637
KFVETHPEF	9	Unmodified	_KFVETHPEF_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2854614257812	2	567.284931	1132.55531	0.3546	0.00020116	0.31369	0.00017795	0.66829	0.00037911	567.2850740834871	35.775	1.0338	35.861	35.62	36.654	0.086246					89	36	4	0	0	0	2.4232E-17	3	7211	7163;7211;7263		223.81	173.88	1	3924300			18058	1435	10182	10183	22960;22961;22962	22961					-0.005665609023253637
KFVKGLLLV	9	Unmodified	_KFVKGLLLV_					0	0	0			REV__ENST00000381007.8_1_5:65008834-65017846:-|nuORF	REV__ENST00000381007.8_1_5:65008834-65017846:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7795715332031	2	508.846971	1015.67939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.023	1	11.926	11.426	12.426	-0.096607								0	0	0	0.26829	1	5	5		0	0	1		+		18059	20559	10183	10184	22963	22963					0.17217561655820646
KFVLFTWTS	9	Unmodified	_KFVLFTWTS_					0	0	0			REV__ENST00000369478.3_1_1:117297160-117297342:+|nuORF	REV__ENST00000369478.3_1_1:117297160-117297342:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.821044921875	2	564.808042	1127.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.682	1	81.657	81.157	82.157	-0.02404								0	0	0	0.2489	1	21270	21270		6.7232	0	1		+		18060	20356	10184	10185	22964	22964					0.042835039997498825
KFVPILIEKH	10	Unmodified	_KFVPILIEKH_					0	0	0			REV__nc|ENSG00000131473|P53396-3|ACLY	REV__nc|ENSG00000131473|P53396-3|ACLY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.5887451171875	3	408.588536	1222.74378	0.22332	9.1245E-05	0.72833	0.00029759	0.95165	0.00038883	408.5886787623794	39.887	1.3406	39.979	39.69	41.031	0.09267					113	48	3	0	0	0	0.32051	1	8461	8461		3.8763	3.717	1	540650	+		18061	15517	10185	10186	22965	22965					0.14131716741962919
KFVPILIEKH	10	Unmodified	_KFVPILIEKH_					0	0	0			REV__nc|ENSG00000131473|P53396-3|ACLY	REV__nc|ENSG00000131473|P53396-3|ACLY	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	408.588536	1222.74378	-0.023721	-9.692E-06	0.86227	0.00035231	0.83855	0.00034262	408.588743164232	40.217	1.5824	40.217	39.831	41.413	0	0.13819	0.00010717	NaN	3.8763	152	57	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	601690	+		18062	15517	10185	10186							0.14131716741962919
KFVPILIEKH	10	Unmodified	_KFVPILIEKH_					0	0	0			REV__nc|ENSG00000131473|P53396-3|ACLY	REV__nc|ENSG00000131473|P53396-3|ACLY	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	408.588536	1222.74378	0.10359	4.2325E-05	0.73903	0.00030196	0.84261	0.00034428	408.5887220883453	39.941	1.4253	40.04	39.565	40.99	0.099407	-0.038668	-4.3898E-05	NaN	3.8763	104	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	647920	+		18063	15517	10185	10186							0.14131716741962919
KFVPPLVF	8	Unmodified	_KFVPPLVF_					0	0	0			REV__ENSG00000167608|ENST00000619895|TMC4	REV__ENSG00000167608|ENST00000619895|TMC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.79168701171875	2	473.791664	945.568775	0.20839	9.8731E-05	-1.2053	-0.00057105	-0.99688	-0.00047231	473.791397489577	68.53	0.63449	68.602	68.383	69.018	0.071938					52	23	3	0	0	0	0.39956	1	17264	17264		19.439	0	1	436640	+		18064	17394	10186	10187	22966	22966					0.09381341667574361
KFVPPLVF	8	Unmodified	_KFVPPLVF_					0	0	0			REV__ENSG00000167608|ENST00000619895|TMC4	REV__ENSG00000167608|ENST00000619895|TMC4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	473.791664	945.568775	0.19194	9.094E-05	-1.0013	-0.00047439	-0.80932	-0.00038345	473.7914758278058	68.592	0.62193	68.592	68.355	68.977	0	-0.0022279	0.000181	NaN	19.439	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263230	+		18065	17394	10186	10187							0.09381341667574361
KFVPPLVF	8	Unmodified	_KFVPPLVF_					0	0	0			REV__ENSG00000167608|ENST00000619895|TMC4	REV__ENSG00000167608|ENST00000619895|TMC4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	473.791664	945.568775	0.20839	9.8731E-05	-1.2053	-0.00057105	-0.99688	-0.00047231	473.791397489577	68.53	0.63449	68.602	68.383	69.018	0.071938	0.007056	-1.2311E-05	NaN	19.439	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436640	+		18066	17394	10186	10187							0.09381341667574361
KFVPPLVF	8	Unmodified	_KFVPPLVF_					0	0	0			REV__ENSG00000167608|ENST00000619895|TMC4	REV__ENSG00000167608|ENST00000619895|TMC4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	473.791664	945.568775	0.29377	0.00013919	-1.2578	-0.00059594	-0.96404	-0.00045675	473.79128602486475	68.609	0.57875	68.59	68.37	68.949	-0.019157	-0.0048281	-6.21E-05	NaN	19.439	52	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347840	+		18067	17394	10186	10187							0.09381341667574361
KFVSQIYDSAS	11	Unmodified	_KFVSQIYDSAS_					0	0	0			REV__ENST00000475405.2_1_2:74274397-74300767:+|nuORF	REV__ENST00000475405.2_1_2:74274397-74300767:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.55926513671875	3	415.543432	1243.60847	-0.36161	-0.00015026	-2.0401	-0.00084776	-2.4017	-0.00099803	415.5427518753305	13.524	0.672	13.524	13.2	13.872	0					60	23	4	0	0	0	0.3325	1	429	429		4.1166	1.8639	1	277930	+		18068	18510	10187	10188	22967	22967					-0.0035922791032589885
KFWQYQVF	8	Unmodified	_KFWQYQVF_					0	0	0			REV__nc|ENSG00000172175|Q9UDY8-2|MALT1	REV__nc|ENSG00000172175|Q9UDY8-2|MALT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.2901611328125	2	573.292559	1144.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.81	1	119.79	119.29	120.29	-0.024361								0	0	0	0.38004	1	30918	30918		0.69038	0.088878	1		+		18069	17698	10188	10189	22968	22968					0.0040635068551182485
KFYKIRLPE	9	Unmodified	_KFYKIRLPE_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.S1928Lfs*17|1|0.08|ENSG00000083857|chr4:186620804-186620804|A/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3235473632812	2	597.355691	1192.69683	0.2518	0.00015041	1.0812	0.00064584	1.333	0.00079625	597.358609658547	95.574	0.23279	95.574	95.465	95.698	0					52	25	3	0	0	0	0.26168	1	25546	25546		1.8442	0	1	135720			18070	1234	10189	10190	22969	22969					0.10818857190770359
KFYKKTKQLP	10	Unmodified	_KFYKKTKQLP_					0	0	0		nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;GON4L|p.R1117Qfs*40|1|0.04|ENSG00000116580|chr1:155766107-155766123|TCTCTTTGAGGGTCTCC/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF	nc|ENSG00000163374|Q9H869-5|YY1AP1	nc|ENSG00000163374|Q9H869-5|YY1AP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.89013671875	2	640.889898	1279.76524	0.35656	0.00022852	-0.086906	-5.5697E-05	0.26966	0.00017282	640.8897064731815	74.061	0.64688	74.061	73.86	74.507	0					50	21	3	0	0	0	0.36786	1	18987	18987		9.3831	0	1	1666800			18071	2732	10190	10191	22970	22970					0.13655101770632427
KFYLIFVP	8	Unmodified	_KFYLIFVP_					0	0	0			REV__GPR179|p.V2023Sfs*85|1|0.29|ENSG00000277399|chr17:38327490-38327502|TTCTTTCAGTCAC/-|frameshift_variant	REV__GPR179|p.V2023Sfs*85|1|0.29|ENSG00000277399|chr17:38327490-38327502|TTCTTTCAGTCAC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.805419921875	2	513.804771	1025.59499	0.3087	0.00015861	1.0229	0.00052556	1.3316	0.00068417	513.8049969801025	86.947	0.79906	87.034	86.705	87.504	0.087097					83	34	4	0	0	0	0.45942	1	23039	23039		2.5775	0.27475	1	546460	+		18072	19343	10191	10192	22971	22971					0.0832161083903884
KFYMWFYF	8	Unmodified	_KFYMWFYF_					0	0	0		ENST00000498257.5_1_6:129811877-129812174:+|nuORF	ENST00000498257.5_1_6:129811877-129812174:+|nuORF	ENST00000498257.5_1_6:129811877-129812174:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5841369628906	3	411.193018	1230.55722	0.15181	6.2424E-05	0.248	0.00010198	0.39981	0.0001644	411.1931503847096	17.341	0.79432	17.281	16.971	17.766	-0.060429					86	27	4	0	0	0	0.34378	1	1667	1667		3.9444	0	1	467040			18073	11252	10192	10193	22972	22972					-0.04883223418073612
KFYSGTGFKF	10	Unmodified	_KFYSGTGFKF_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1;ENST00000588806.1_1_17:40665776-40673135:+|nuORF;ENST00000592831.1_1_17:40673015-40673135:+|nuORF;ENST00000587299.1_1_17:40672405-40673135:+|nuORF	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.3037719726562	2	591.303124	1180.5917	0.6627	0.00039186	1.2018	0.00071063	1.8645	0.0011025	591.3034499128776	48.074	0.5702	48.074	47.934	48.504	0					33	19	2	0	0	0	0.0014715	1	10963	10963		114.5	68.797	1	1306400			18074	562	10193	10194	22973	22973					0.008623159943681458
KFYSGTGFKF	10	Unmodified	_KFYSGTGFKF_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1;ENST00000588806.1_1_17:40665776-40673135:+|nuORF;ENST00000592831.1_1_17:40673015-40673135:+|nuORF;ENST00000587299.1_1_17:40672405-40673135:+|nuORF	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.3036499023438	2	591.303124	1180.5917	0.79058	0.00046747	0.94559	0.00055913	1.7362	0.0010266	591.3033018987852	47.997	0.57801	48.045	47.866	48.444	0.04752					40	21	3	0	0	0	0.0055648	1	10929	10929		88.364	32.187	1	1834600			18075	562	10193	10194	22974	22974					0.008623159943681458
KFYSGTGFKF	10	Unmodified	_KFYSGTGFKF_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1;ENST00000588806.1_1_17:40665776-40673135:+|nuORF;ENST00000592831.1_1_17:40673015-40673135:+|nuORF;ENST00000587299.1_1_17:40672405-40673135:+|nuORF	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.3042602539062	2	591.303124	1180.5917	0.60983	0.00036059	1.276	0.0007545	1.8858	0.0011151	591.3034557974856	47.973	0.76414	48.016	47.85	48.614	0.04332					46	28	3	0	0	0	0.015119	1	10914	10914		77.049	31.349	1	1693900			18076	562	10193	10194	22975	22975					0.008623159943681458
KFYTDPSYF	9	Unmodified	_KFYTDPSYF_					0	0	0		nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3	nc|ENSG00000158195|Q9Y6W5-2|WASF2	nc|ENSG00000158195|Q9Y6W5-2|WASF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2717895507812	2	584.27149	1166.52843	0.69046	0.00040341	-0.60589	-0.000354	0.084571	4.9412E-05	584.2712294186672	54.808	0.9685	54.808	54.405	55.374	0					100	35	4	0	0	0	0.0054984	2	13011	13011;13061		86.332	59.448	1	1889500			18077	3684	10194	10195	22976;22977	22976					-0.0481766951352256
KFYTDPSYF	9	Unmodified	_KFYTDPSYF_					0	0	0		nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3	nc|ENSG00000158195|Q9Y6W5-2|WASF2	nc|ENSG00000158195|Q9Y6W5-2|WASF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.271484375	2	584.27149	1166.52843	0.56412	0.0003296	-0.6413	-0.00037469	-0.077176	-4.5092E-05	584.2712879195745	54.715	0.87971	54.778	54.483	55.363	0.063202					82	32	4	0	0	0	0.011693	2	12986	12986;13041		76.825	49.941	1	2081200			18078	3684	10194	10195	22978;22979	22978					-0.0481766951352256
KFYTDPSYF	9	Unmodified	_KFYTDPSYF_					0	0	0		nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3	nc|ENSG00000158195|Q9Y6W5-2|WASF2	nc|ENSG00000158195|Q9Y6W5-2|WASF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.271484375	2	584.27149	1166.52843	0.67087	0.00039197	-0.51114	-0.00029865	0.15972	9.3322E-05	584.2712660605715	55.029	0.88023	55.013	54.631	55.511	-0.015923					76	32	3	0	0	0	0.0054984	2	13115	13071;13115		86.332	59.448	1	2733200			18079	3684	10194	10195	22980;22981	22981					-0.0481766951352256
KFYVALTG	8	Unmodified	_KFYVALTG_					0	0	0		nc|ENSG00000004866|Q9NRC1|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000485753.5_1_1:113153424-113159539:-|nuORF;ENST00000463235.5_1_1:113098633-113162595:-|nuORF;ENST00000473206.5_1_1:113149890-113161735:-|nuORF;ENST00000479436.5_1_1:113134145-113161558:-|nuORF;ENST00000467335.5_1_1:113153424-113161735:-|nuORF;ENST00000498383.5_1_1:113153265-113161717:-|nuORF;ENST00000497235.5_1_1:113140697-113161735:-|nuORF;ENST00000369669.5_1_1:113140697-113161406:-|nuORF;nc|ENSG00000007341|Q8TDW4-2|ST7L;nc|ENSG00000007341|Q8TDW4-7|ST7L;nc|ENSG00000007341|Q8TDW4-5|ST7L;ENSG00000007341|ENST00000358039|ST7L	nc|ENSG00000004866|Q9NRC1|ST7;nc|ENSG00000007341|Q8TDW4-2|ST7L	nc|ENSG00000004866|Q9NRC1|ST7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2813415527344	2	449.755278	897.496004	0.19971	8.9822E-05	0.11615	5.224E-05	0.31587	0.00014206	449.75532934422546	59.071	1.1471	59.071	58.413	59.56	0					50	39	2	0	0	0	0.31617	1	14378	14378		26.884	0.61551	1	229790			18080	318;378	10195	10196	22982	22982					0.04315587874134508
KGAAVYFLF	9	Unmodified	_KGAAVYFLF_					0	0	0		ENST00000394464.6_1_5:142780416-142782924:-|nuORF	ENST00000394464.6_1_5:142780416-142782924:-|nuORF	ENST00000394464.6_1_5:142780416-142782924:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2840576171875	2	508.284203	1014.55385	0.16099	8.1829E-05	-0.078794	-4.005E-05	0.082196	4.1779E-05	508.284031187582	69.629	0.71014	69.629	69.339	70.049	0					76	25	4	0	0	0	0.079066	3	17625	17601;17625;17670		42.095	9.9776	1	1927100			18081	10070	10196	10197	22983;22984;22985	22984					0.04715849799572425
KGAAVYFLF	9	Unmodified	_KGAAVYFLF_					0	0	0		ENST00000394464.6_1_5:142780416-142782924:-|nuORF	ENST00000394464.6_1_5:142780416-142782924:-|nuORF	ENST00000394464.6_1_5:142780416-142782924:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2840270996094	2	508.284203	1014.55385	0.13635	6.9302E-05	-0.042898	-2.1805E-05	0.093447	4.7498E-05	508.28404360661585	69.615	0.68497	69.681	69.366	70.051	0.066048					76	23	4	0	0	0	0.12846	2	17579	17579;17627		34.102	7.7612	1	2151500			18082	10070	10196	10197	22986;22987	22986					0.04715849799572425
KGAAVYFLF	9	Unmodified	_KGAAVYFLF_					0	0	0		ENST00000394464.6_1_5:142780416-142782924:-|nuORF	ENST00000394464.6_1_5:142780416-142782924:-|nuORF	ENST00000394464.6_1_5:142780416-142782924:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2840576171875	2	508.284203	1014.55385	0.19462	9.8923E-05	-0.082827	-4.21E-05	0.11179	5.6823E-05	508.2840353374096	69.689	0.72539	69.667	69.324	70.049	-0.022087					87	26	5	0	0	0	0.12846	2	17597	17597;17644		34.102	7.7612	1	2029600			18083	10070	10196	10197	22988;22989	22988					0.04715849799572425
KGAGGGCG	8	Unmodified	_KGAGGGCG_					0	0	0			REV__ENST00000484246.5_1_13:115047189-115048344:+|nuORF	REV__ENST00000484246.5_1_13:115047189-115048344:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.33740234375	1	606.266421	605.259145	0.4077	0.00024718	2.8508	0.0017283	3.2585	0.0019755	606.2674208002377	69.97	0.078598	69.97	69.92	69.999	0					4	2	2	0	0	0	0.34445	1	17715	17715		0	0	1	48723	+		18084	17495	10197	10198	22990	22990					-0.059274618910194476
KGAKENLI	8	Unmodified	_KGAKENLI_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.24102783203125	2	436.763635	871.512717	-0.37271	-0.00016279	-0.55246	-0.0002413	-0.92517	-0.00040408	436.7633994965212	13.582	0.44165	13.515	13.388	13.829	-0.067495					20	15	2	0	0	0	0.34337	1	551	551		5.2307	2.6532	1	26017	+		18085	23013	10198	10199	22991	22991					0.071820887600893
KGAKGGGA	8	Unmodified	_KGAKGGGA_					0	0	0			REV__CHMP4B|p.G110Afs*7|1|0.21|ENSG00000101421|chr20:33848603-33848603|G/-|frameshift_variant	REV__CHMP4B|p.G110Afs*7|1|0.21|ENSG00000101421|chr20:33848603-33848603|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	645.3645629882812	1	645.36785	644.360573	0.66218	0.00042735	-2.1496	-0.0013873	-1.4874	-0.00095993	645.3642848195112	64.054	0.98039	64.054	63.826	64.807	0					69	35	4	0	0	0	0.46491	1	15936	15936		0.69038	0	1	480060	+		18086	13150	10199	10200	22992	22992					0.024167328031921897
KGAKGGGA	8	Unmodified	_KGAKGGGA_					0	0	0			REV__CHMP4B|p.G110Afs*7|1|0.21|ENSG00000101421|chr20:33848603-33848603|G/-|frameshift_variant	REV__CHMP4B|p.G110Afs*7|1|0.21|ENSG00000101421|chr20:33848603-33848603|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	645.365234375	1	645.36785	644.360573	0.66218	0.00042735	-2.1496	-0.0013873	-1.4874	-0.00095993	645.3642848195112	64.054	0.98039	64.054	63.826	64.807	0					69	35	4	0	0	0	0.34437	1	15884	15884		0.69038	0	1	480060	+		18087	13150	10199	10200	22993	22993					0.024167328031921897
KGASGTFQLK	10	Unmodified	_KGASGTFQLK_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.278564453125	2	518.792924	1035.57129	0.27572	0.00014304	-0.68419	-0.00035495	-0.40847	-0.00021191	518.7923554385457	26.433	0.37224	26.433	26.271	26.644	0					18	12	3	0	0	0	0.31323	1	4397	4397		15.248	4.4246	1	77852			18088	3322	10200	10201	22994	22994					0.05493145334571636
KGAWKLTKVF	10	Unmodified	_KGAWKLTKVF_					0	0	0			REV__ENST00000406606.7_3_9:136628319-136628436:-|nuORF	REV__ENST00000406606.7_3_9:136628319-136628436:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3428955078125	2	589.358234	1176.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.29	1	105.29	104.79	105.79	0								0	0	0	0.38126	1	27894	27894		1.6526	0	1		+		18089	20740	10201	10202	22995	22995					0.12063161053401927
KGCGHKLS	8	Unmodified	_KGCGHKLS_					0	0	0			REV__ENSG00000185219|ENST00000396077|ZNF445	REV__ENSG00000185219|ENST00000396077|ZNF445	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8957214355469	2	415.22108	828.427607	0.21527	8.9384E-05	0.48468	0.00020125	0.69995	0.00029063	415.2198501053074	44.057	1.1112	44.141	43.97	45.081	0.083992					65	40	3	0	0	0	0.34218	1	9966	9966		0.6015	0	1	638960	+		18090	18363	10202	10203	22996	22996					0.006530200226279703
KGCGHKLS	8	Unmodified	_KGCGHKLS_					0	0	0			REV__ENSG00000185219|ENST00000396077|ZNF445	REV__ENSG00000185219|ENST00000396077|ZNF445	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	415.22108	828.427607	-0.089314	-3.7085E-05	-2.07	-0.0008595	-2.1593	-0.00089658	415.22014716196963	44.007	0.73637	44.007	43.519	44.255	0	-0.066933	-1.3648E-05	NaN	0.6015	51	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1296400	+		18091	18363	10202	10203							0.006530200226279703
KGCVKPKFP	9	Unmodified	_KGCVKPKFP_					0	0	0			REV__ENSG00000154229|ENST00000413366|PRKCA	REV__ENSG00000154229|ENST00000413366|PRKCA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7641906738281	2	502.291505	1002.56846	0.087201	4.38E-05	2.9552	0.0014844	3.0424	0.0015282	502.7947151931719	14.909	0.36999	14.8	14.535	14.905	-0.10981					17	12	2	0	0	0	0.26168	1	790	790		1.8442	0	1	37998	+		18092	16651	10203	10204	22997	22997					0.06727598676047819
KGCVKPKFP	9	Unmodified	_KGCVKPKFP_					0	0	0			REV__ENSG00000154229|ENST00000413366|PRKCA	REV__ENSG00000154229|ENST00000413366|PRKCA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	502.291505	1002.56846	0.046033	2.3122E-05	2.8883	0.0014508	2.9344	0.0014739	502.29290128762307	14.844	0.24895	14.844	14.676	14.925	0	0.015452	0.00010237	NaN	1.8442	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29520	+		18093	16651	10203	10204							0.06727598676047819
KGCVKPKFP	9	Unmodified	_KGCVKPKFP_					0	0	0			REV__ENSG00000154229|ENST00000413366|PRKCA	REV__ENSG00000154229|ENST00000413366|PRKCA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	502.291505	1002.56846	0.02616	1.314E-05	2.6462	0.0013292	2.6724	0.0013423	502.29272829936525	14.906	0.36588	14.841	14.618	14.984	-0.064414	0.013108	-0.00014087	NaN	1.8442	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39397	+		18094	16651	10203	10204							0.06727598676047819
KGDREVLI	8	Unmodified	_KGDREVLI_					0	0	0			REV__nc|ENSG00000117477|Q5TID7-2|CCDC181	REV__nc|ENSG00000117477|Q5TID7-2|CCDC181	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2742919921875	2	465.274367	928.53418	-0.3678	-0.00017113	0.93626	0.00043562	0.56846	0.00026449	465.27469137265894	39.348	0.43742	39.348	39.073	39.51	0					38	15	3	0	0	0	0.31617	1	8294	8294		20.454	0	1	530390	+		18095	14969	10204	10205	22998	22998					0.06705473788815652
KGESKTSKEK	10	Unmodified	_KGESKTSKEK_					0	0	0			REV__ENSG00000083544|ENST00000377881|TDRD3	REV__ENSG00000083544|ENST00000377881|TDRD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3118896484375	2	561.311677	1120.6088	-0.0072164	-4.0507E-06	0.11114	6.2383E-05	0.10392	5.8333E-05	561.3117683369388	13.514	0.38776	13.415	13.276	13.663	-0.09929					31	13	3	0	0	0	0.41242	1	500	500		1.1933	1.1933	1	259270	+		18096	13935	10205	10206	22999	22999					0.05332191809497999
KGETQVLMNLS	11	Unmodified	_KGETQVLMNLS_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5791320800781	3	407.216551	1218.62782	-0.25884	-0.0001054	-0.81034	-0.00032999	-1.0692	-0.00043539	407.21620597703367	28.471	0.62016	28.471	28.277	28.898	0					34	21	3	0	0	0	0.32855	1	4976	4976		5.8681	0	1	152470	+		18097	17497	10206	10207	23000	23000					0.027254051089357745
KGFATKGKLPM	11	Unmodified	_KGFATKGKLPM_					0	0	0			REV__nc|ENSG00000197410|Q6V1P9-5|DCHS2	REV__nc|ENSG00000197410|Q6V1P9-5|DCHS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.34326171875	2	589.341726	1176.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.62	1	118.6	118.1	119.1	-0.024147								0	0	0	0.38126	1	30656	30656		1.1933	0.12188	1		+		18098	23152	10207	10208	23001	23001					0.0876321093903698
KGFATKGKLPM	11	Unmodified	_KGFATKGKLPM_					0	0	0			REV__nc|ENSG00000197410|Q6V1P9-5|DCHS2	REV__nc|ENSG00000197410|Q6V1P9-5|DCHS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3419799804688	2	589.341726	1176.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.73	1	116.76	116.26	117.26	0.020988								0	0	0	0.38126	1	30281	30281		1.1933	0.50296	1		+		18099	23152	10207	10208	23002	23002					0.0876321093903698
KGFSQSARL	9	Unmodified	_KGFSQSARL_					0	0	0		nc|ENSG00000131115|Q86WZ6-2|ZNF227;ENSG00000131115|ENST00000313040|ZNF227	nc|ENSG00000131115|Q86WZ6-2|ZNF227	nc|ENSG00000131115|Q86WZ6-2|ZNF227	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7901306152344	2	497.277441	992.540328	0.22892	0.00011384	-0.028091	-1.3969E-05	0.20083	9.9867E-05	497.27743176679417	18.59	0.53231	18.59	18.363	18.895	0					31	18	2	0	0	0	0.25706	1	1972	1972		6.7232	0	1	52872			18100	3544	10208	10209	23003	23003					0.04375992020322883
KGFSQSARL	9	Unmodified	_KGFSQSARL_					0	0	0		nc|ENSG00000131115|Q86WZ6-2|ZNF227;ENSG00000131115|ENST00000313040|ZNF227	nc|ENSG00000131115|Q86WZ6-2|ZNF227	nc|ENSG00000131115|Q86WZ6-2|ZNF227	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.277441	992.540328	0.20429	0.00010159	0.25718	0.00012789	0.46146	0.00022948	497.2775811002456	18.746	0.50377	18.628	18.358	18.862	-0.11739	0.023517	5.6304E-05	NaN	6.7232	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70246			18101	3544	10208	10209							0.04375992020322883
KGFWIHWKLK	10	Unmodified	_KGFWIHWKLK_					0	0	0		ENSG00000166262|ENST00000299338|FAM227B;nc|ENSG00000166262|Q96M60-2|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7510986328125	3	448.264276	1341.771	0.53791	0.00024112	0.36042	0.00016156	0.89833	0.00040269	448.2643492920102	20.489	0.71001	20.436	20.151	20.861	-0.05291					68	25	4	0	0	0	0.32068	1	2629	2629		3.5871	0.26742	1	290490			18102	6052	10209	10210	23004	23004					0.11378245072955906
KGGGGGGA	8	Unmodified	_KGGGGGGA_					0	0	0		ENSG00000248713|ENST00000511828|C4orf54;ENST00000586790.5_1_19:56159538-56160159:+|nuORF	ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.278076171875	1	560.2787	559.271424	0.39689	0.00022237	-4.1205	-0.0023086	-3.7236	-0.0020862	560.2786278591091	45.158	0.90029	45.158	44.739	45.64	0					60	32	4	0	0	0	0.46692	1	10118	10118		0	0	1	676310			18103	8582	10210	10211	23005	23005					-0.02584102156345125
KGGNELGLK	9	Unmodified	_KGGNELGLK_					0	0	0		ENSG00000205629|ENST00000399069|LCMT1;nc|ENSG00000205629|Q9UIC8-2|LCMT1;nc|ENSG00000205629|Q9UIC8-3|LCMT1;ENST00000574450.1_1_16:25186216-25189341:+|nuORF	ENSG00000205629|ENST00000399069|LCMT1	ENSG00000205629|ENST00000399069|LCMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.9416809082031	2	458.266542	914.51853	0.22887	0.00010489	0.4697	0.00021525	0.69857	0.00032013	458.2664768919058	37.343	0.64571	37.436	37.17	37.816	0.093018					60	23	3	0	0	0	0.25431	1	7788	7788		9.3831	1.473	1	498720			18104	8298	10211	10212	23006	23006					0.05785187271749237
KGGNELGLK	9	Unmodified	_KGGNELGLK_					0	0	0		ENSG00000205629|ENST00000399069|LCMT1;nc|ENSG00000205629|Q9UIC8-2|LCMT1;nc|ENSG00000205629|Q9UIC8-3|LCMT1;ENST00000574450.1_1_16:25186216-25189341:+|nuORF	ENSG00000205629|ENST00000399069|LCMT1	ENSG00000205629|ENST00000399069|LCMT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	458.266542	914.51853	0.47942	0.0002197	-0.10884	-4.9876E-05	0.37059	0.00016983	458.2662999492494	37.454	0.66317	37.454	37.207	37.871	0	0.002906	-0.0003539	NaN	8.7454	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375900			18105	8298	10211	10212							0.05785187271749237
KGGNELGLK	9	Unmodified	_KGGNELGLK_					0	0	0		ENSG00000205629|ENST00000399069|LCMT1;nc|ENSG00000205629|Q9UIC8-2|LCMT1;nc|ENSG00000205629|Q9UIC8-3|LCMT1;ENST00000574450.1_1_16:25186216-25189341:+|nuORF	ENSG00000205629|ENST00000399069|LCMT1	ENSG00000205629|ENST00000399069|LCMT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	458.266542	914.51853	0.17751	8.1345E-05	0.54946	0.0002518	0.72697	0.00033315	458.26655314189406	37.375	0.62567	37.463	37.247	37.873	0.08741	0.011695	0.00024945	NaN	8.7454	55	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437570			18106	8298	10211	10212							0.05785187271749237
KGGSQVVELL	10	Unmodified	_KGGSQVVELL_					0	0	0			REV__ENST00000484488.5_1_20:60711915-60714832:-|nuORF	REV__ENST00000484488.5_1_20:60711915-60714832:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.301025390625	2	515.300581	1028.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.226	1	32.28	31.78	32.78	0.054371								0	0	0	0.34376	1	6111	6111		17.443	1.5955	1		+		18107	14251	10212	10213	23007	23007					0.07346012131779389
KGGTPLFHG	9	Unmodified	_KGGTPLFHG_					0	0	0			REV__ENST00000466892.5_1_6:31237264-31237351:-|nuORF	REV__ENST00000466892.5_1_6:31237264-31237351:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.28253173828125	2	457.248152	912.481751	0.2356	0.00010773	-0.0013827	-6.3222E-07	0.23422	0.0001071	457.2478891699385	29.03	0.88112	29.03	28.67	29.551	0					58	31	3	0	0	0	0.22674	1	5190	5190		12.241	3.6474	1	361730	+		18108	21290	10213	10214	23008	23008					0.02200935445853247
KGIFVAPSN	9	Unmodified	_KGIFVAPSN_					0	0	0			REV__ENSG00000171815|ENST00000306549|PCDHB1	REV__ENSG00000171815|ENST00000306549|PCDHB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7558898925781	2	466.763635	931.512717	-0.089535	-4.1792E-05	1.4942	0.00069743	1.4047	0.00065564	466.76440113450536	22.445	0.65358	22.357	22.166	22.82	-0.087608					34	23	2	0	0	0	0.31417	1	3290	3290		6.7232	2.3939	1	87193	+		18109	17667	10214	10215	23009	23009					0.04422088760088627
KGILTAGFFT	10	Unmodified	_KGILTAGFFT_					0	0	0			REV__nc|ENSG00000062716|Q96GC9-2|VMP1	REV__nc|ENSG00000062716|Q96GC9-2|VMP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3180541992188	2	527.800217	1053.58588	0.23665	0.0001249	-4.2924	-0.0022655	-4.0557	-0.0021406	527.7980375103779	17.352	0.23599	17.235	17.053	17.289	-0.11739					10	8	2	0	0	0	0.41168	1	1596	1596		1.3295	0.25807	1	21208	+		18110	13634	10215	10216	23010	23010					0.06123217482695509
KGILTAGFFT	10	Unmodified	_KGILTAGFFT_					0	0	0			REV__nc|ENSG00000062716|Q96GC9-2|VMP1	REV__nc|ENSG00000062716|Q96GC9-2|VMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3196411132812	2	527.800217	1053.58588	0.23665	0.0001249	-4.2924	-0.0022655	-4.0557	-0.0021406	527.7980375103779	17.352	0.23599	17.235	17.053	17.289	-0.11739					10	8	2	0	0	0	0.32139	1	1586	1586		1.3295	0.5359	1	21208	+		18111	13634	10215	10216	23011	23011					0.06123217482695509
KGIQAFRR	8	Unmodified	_KGIQAFRR_					0	0	0			REV__nc|ENSG00000165731|P07949-2|RET	REV__nc|ENSG00000165731|P07949-2|RET	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.29571533203125	2	488.295968	974.577383	0.099261	4.8469E-05	-1.6654	-0.00081319	-1.5661	-0.00076472	488.29530893454216	17.707	0.37262	17.59	17.467	17.84	-0.11739					16	12	2	0	0	0	0.46022	1	1728	1728		2.3027	0	1	51809	+		18112	17262	10216	10217	23012	23012					0.08907708356753119
KGKDESMMLL	10	Unmodified	_KGKDESMMLL_					0	0	0			REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.2933959960938	2	576.293585	1150.57262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.94	1	115.92	115.42	116.42	-0.020988								0	0	0	0.37157	1	30049	30049		5.7319	0	1		+		18113	16903	10217	10218	23013	23013					0.0033527531682011613
KGKKHLLFL	9	Unmodified	_KGKKHLLFL_					0	0	0			REV__nc|ENSG00000112769|Q16363-2|LAMA4	REV__nc|ENSG00000112769|Q16363-2|LAMA4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3364868164062	2	542.355494	1082.69644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.618	1	97.68	97.18	98.18	0.061516								0	0	0	0.26258	1	26122	26122		2.3027	0	1		+		18114	14787	10218	10219	23014	23014					0.1583948226159464
KGLAAALLV	9	Unmodified	_KGLAAALLV_					0	0	0		ENSG00000275385|ENST00000616054|CCL18	ENSG00000275385|ENST00000616054|CCL18	ENSG00000275385|ENST00000616054|CCL18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.2866516113281	2	428.286746	854.558939	0.39623	0.0001697	-0.6458	-0.00027659	-0.24957	-0.00010689	428.28636919074046	55.806	0.59376	55.806	55.507	56.101	0					42	20	3	0	0	0	0.1669	1	13370	13370		28.487	9.0478	1	1389600			18115	8718	10219	10220	23015	23015					0.12584153662169228
KGLAAALLV	9	Unmodified	_KGLAAALLV_					0	0	0		ENSG00000275385|ENST00000616054|CCL18	ENSG00000275385|ENST00000616054|CCL18	ENSG00000275385|ENST00000616054|CCL18	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	428.286746	854.558939	0.31922	0.00013672	-0.46518	-0.00019923	-0.14596	-6.2514E-05	428.2863878670217	55.855	0.57079	55.836	55.588	56.159	-0.019081	0.0020367	7.1819E-05	NaN	28.487	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1443700			18116	8718	10219	10220							0.12584153662169228
KGLARRASA	9	Unmodified	_KGLARRASA_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2855529785156	2	465.2856	928.556647	0.034668	1.613E-05	-0.018845	-8.7682E-06	0.015823	7.3622E-06	465.2855521975359	79.782	1.1898	79.843	79.353	80.543	0.061417					134	45	5	0	0	0	0.28674	1	20762	20762		10.824	0	1	5421200			18117	460	10220	10221	23016	23016					0.08951117977073864
KGLARRASA	9	Unmodified	_KGLARRASA_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2856750488281	2	465.2856	928.556647	0.23855	0.00011099	-0.25256	-0.00011751	-0.014009	-6.5184E-06	465.2854501627056	79.855	1.2792	79.826	79.371	80.65	-0.028931					132	46	4	0	0	0	0.28674	1	20781	20781		10.824	0	1	6764700			18118	460	10220	10221	23017	23017					0.08951117977073864
KGLFFDHYFG	10	Unmodified	_KGLFFDHYFG_					0	0	0			REV__TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	REV__TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.8688659667969	3	410.869591	1229.58694	-0.37171	-0.00015273	-0.84546	-0.00034738	-1.2172	-0.0005001	410.86921976299413	13.917	0.85076	13.917	13.74	14.591	0					61	29	4	0	0	0	0.40992	1	563	563		0.69767	0.33099	1	382160	+		18119	16169	10221	10222	23018	23018					-0.018665681483980734
KGLFFDHYFG	10	Unmodified	_KGLFFDHYFG_					0	0	0			REV__TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	REV__TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	410.869591	1229.58694	-0.20805	-8.5481E-05	-0.61812	-0.00025397	-0.82617	-0.00033945	410.8692846216515	14.053	0.6047	13.948	13.763	14.368	-0.10466	0.011219	0.00016096	NaN	0.69767	53	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374900	+		18120	16169	10221	10222							-0.018665681483980734
KGLFFDHYFG	10	Unmodified	_KGLFFDHYFG_					0	0	0			REV__TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	REV__TARS2|p.Q390*|1|0.21|ENSG00000143374|chr1:150497677-150497681|CAGAG/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	410.869591	1229.58694	-0.22794	-9.3655E-05	-0.75764	-0.00031129	-0.98559	-0.00040495	410.86922746786075	14.011	0.42879	13.945	13.802	14.231	-0.066068	0.0081957	-1.1019E-05	NaN	0.69767	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	396680	+		18121	16169	10221	10222							-0.018665681483980734
KGLFLHKLS	9	Unmodified	_KGLFLHKLS_					0	0	0			REV__ENSG00000186648|ENST00000342740|CARMIL3	REV__ENSG00000186648|ENST00000342740|CARMIL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2685546875	2	521.824027	1041.6335	0.59047	0.00030812	0.98612	0.00051458	1.5766	0.0008227	521.8243562996277	37.143	0.30883	37.236	37.086	37.395	0.093018					11	10	2	0	0	0	0.25526	1	7589	7589		4.3292	0	1	94990	+		18122	18458	10222	10223	23019	23019					0.11434916473558587
KGLLDIEGLLF	11	Unmodified	_KGLLDIEGLLF_					0	0	0			REV__GADL1|p.D512G|1|0.08|ENSG00000144644|chr3:30728273-30728273|T/C|missense_variant	REV__GADL1|p.D512G|1|0.08|ENSG00000144644|chr3:30728273-30728273|T/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.3612060546875	2	609.360639	1216.70673	-0.10523	-6.4123E-05	0.86903	0.00052955	0.7638	0.00046543	609.361139302774	13.283	0.36915	13.215	13.073	13.443	-0.067496					27	12	3	0	0	0	0.46059	1	385	385		3.2813	0.28607	1	111850	+		18123	22689	10223	10224	23020	23020					0.10704000405530678
KGLLHLIKT	9	Unmodified	_KGLLHLIKT_					0	0	0			REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.28021240234375	2	511.839677	1021.6648	0.062872	3.218E-05	1.3444	0.00068814	1.4073	0.00072032	512.3422628565675	22.156	0.2288	22.107	22.005	22.234	-0.049377					12	7	2	0	0	0	0.26188	1	3031	3031		1.6526	0.96225	1	29095	+		18124	16818	10224	10225	23021	23021					0.1548348950767604
KGLLPLLRSSR	11	Unmodified	_KGLLPLLRSSR_					0	0	0		ENSG00000176387|ENST00000326152|HSD11B2	ENSG00000176387|ENST00000326152|HSD11B2	ENSG00000176387|ENST00000326152|HSD11B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.840576171875	2	620.398422	1238.78229	0.2229	0.00013829	-4.2066	-0.0026098	-3.9837	-0.0024715	620.8979498186123	39.41	0.19313	39.509	39.372	39.565	0.099407					9	6	2	0	0	0	0.33334	1	8271	8271		1.1933	0	1	73079			18125	6923	10225	10226	23022	23022					0.1724502237645993
KGLLPSLFD	9	Unmodified	_KGLLPSLFD_					0	0	0			REV__ENST00000528529.1_1_11:64889784-64893341:+|nuORF	REV__ENST00000528529.1_1_11:64889784-64893341:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2847900390625	2	495.286943	988.559333	0.20223	0.00010016	-3.8058	-0.001885	-3.6036	-0.0017848	495.28486802329763	19.002	0.20177	19.002	18.864	19.066	0					10	6	2	0	0	0	0.33276	1	2115	2115		3.9444	1.3669	1	18386	+		18126	16484	10226	10227	23023	23023					0.06459528591381059
KGLPPPQL	8	Unmodified	_KGLPPPQL_					0	0	0			REV__ENSG00000115904|ENST00000402219|SOS1	REV__ENSG00000115904|ENST00000402219|SOS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.7524108886719	2	425.263271	848.511988	-0.093615	-3.9811E-05	-0.20825	-8.8563E-05	-0.30187	-0.00012837	425.26331416910784	59.003	1.7593	59.003	58.654	60.413	0					186	62	6	0	0	0	0.42758	1	14345	14345		13.508	0.97634	1	9301000	+		18127	14901	10227	10228	23024	23024					0.08167294111046886
KGLPTKPRRR	10	Unmodified	_KGLPTKPRRR_					0	0	0			REV__nc|ENSG00000148773|P46013-2|MKI67	REV__nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.5946350097656	3	403.594796	1207.76256	-0.5631	-0.00022726	0.51203	0.00020665	-0.051072	-2.0612E-05	403.594793719205	12.545	0.62474	12.477	12.226	12.851	-0.06806					32	20	3	0	0	0	0.3994	1	171	171		3.5871	0.5148	1	87534	+		18128	16434	10228	10229	23025	23025					0.16698691156329915
KGLRPSRLT	9	Unmodified	_KGLRPSRLT_					0	0	0		nc|ENSG00000116783|Q59H18-4|TNNI3K;nc|ENSG00000116783|Q59H18-3|TNNI3K;ENSG00000116783|ENST00000326637|TNNI3K;nc|ENSG00000116783|Q59H18-1|TNNI3K	nc|ENSG00000116783|Q59H18-4|TNNI3K	nc|ENSG00000116783|Q59H18-4|TNNI3K	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8031005859375	2	514.322183	1026.62981	0.8447	0.00043445	0.49794	0.0002561	1.3426	0.00069055	514.3223973524505	33.795	0.49942	33.861	33.65	34.149	0.06636					29	17	2	0	0	0	0.24688	1	6544	6544		10.074	2.1638	1	232190			18129	12668	10229	10230	23026	23026					0.11756246699701478
KGLRQYGDK	9	Unmodified	_KGLRQYGDK_					0	0	0			REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|52|3|sense	REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|52|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7952880859375	2	532.795998	1063.57744	0.19058	0.00010154	-0.4598	-0.00024498	-0.26922	-0.00014344	532.7956464756114	22.59	0.80201	22.502	22.191	22.993	-0.087608					64	28	3	0	0	0	0.25431	1	3164	3164		9.3831	0.63772	1	333890	+		18130	22782	10230	10231	23027	23027					0.048196635660815446
KGLVRAATVRE	11	Unmodified	_KGLVRAATVRE_					0	0	0		nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENSG00000101452|ENST00000252011|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.364501953125	2	600.364579	1198.7146	0.44224	0.00026551	-0.59636	-0.00035804	-0.15412	-9.253E-05	600.3641118328038	23.938	0.23792	23.866	23.728	23.966	-0.072559					10	7	2	0	0	0	0.44828	1	3618	3618		4.897	1.6157	1	37733			18131	1701	10231	10232	23028	23028					0.12319572445630911
KGNDTPLAL	9	Unmodified	_KGNDTPLAL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2744445800781	2	464.758549	927.502546	0.26431	0.00012284	0.0078501	3.6484E-06	0.27216	0.00012649	464.75846641810955	39.252	0.60168	39.351	39.074	39.676	0.099407					44	21	3	0	0	0	0.034444	1	8247	8247		58.679	29.597	1	414040			18132	1286	10232	10233	23029	23029					0.03589481034839537
KGPCPRRRQC	10	Unmodified	_KGPCPRRRQC_					0	0	0		ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3287963867188	2	600.813676	1199.6128	-0.052708	-3.1668E-05	2.3137	0.0013901	2.261	0.0013584	600.8149510127756	12.87	0.32606	12.803	12.61	12.936	-0.067496					16	10	2	0	0	0	0.32132	1	252	252		1.4819	0	1	33177			18133	3174	10233	10234	23030	23030					0.020976795505930568
KGPFRSGIL	9	Unmodified	_KGPFRSGIL_					0	0	0		nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-2|NQO1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.790771484375	2	487.792727	973.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.832	1	75.801	75.301	76.301	-0.031487								0	0	0	0.20639	1	19488	19488		20.454	3.5113	1				18134	12869	10234	10235	23031	23031					0.08305770405377189
KGPLIRLRTDN	11	Unmodified	_KGPLIRLRTDN_					0	0	0			REV__ENST00000483968.5_1_3:138478141-138488943:-|nuORF	REV__ENST00000483968.5_1_3:138478141-138488943:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8595581054688	2	641.883136	1281.75172	0.25561	0.00016407	-0.82392	-0.00052886	-0.56831	-0.00036479	641.8821980409841	106.09	0.18732	106.08	106	106.18	-0.0027847					39	27	2	0	0	0	0.33329	1	28074	28074		1.0715	0.46996	1	82793	+		18135	21527	10235	10236	23032	23032					0.12211243991418996
KGPLIRLRTDN	11	Unmodified	_KGPLIRLRTDN_					0	0	0			REV__ENST00000483968.5_1_3:138478141-138488943:-|nuORF	REV__ENST00000483968.5_1_3:138478141-138488943:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	641.883136	1281.75172	0.42817	0.00027483	-1.5561	-0.00099884	-1.1279	-0.000724	641.8819706444483	106.22	0.086777	106.22	106.19	106.28	0.0050583	0.069995	-0.00058537	NaN	1.0715	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127190	+		18136	21527	10235	10236							0.12211243991418996
KGPPGNPGI	9	Unmodified	_KGPPGNPGI_					0	0	0		ENSG00000080573|ENST00000264828|COL5A3;COL5A3|p.P1369Hfs*25|1|0.28|ENSG00000080573|chr19:9969395-9969396|-/GT|frameshift_variant	ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.578369140625	2	418.734877	835.455202	-0.0097452	-4.0807E-06	0.25292	0.00010591	0.24317	0.00010182	418.7348525560031	23.487	0.4925	23.404	23.169	23.661	-0.083397					28	17	3	0	0	0	0.24688	1	3450	3450		14.838	0	1	83456			18137	1160	10236	10237	23033	23033					0.030892465545093728
KGPRRRWVV	9	Unmodified	_KGPRRRWVV_					0	0	0		ENST00000417689.5_1_16:66968434-66968578:+|nuORF;ENST00000566182.1_1_16:66968434-66968817:+|nuORF	ENST00000417689.5_1_16:66968434-66968578:+|nuORF	ENST00000417689.5_1_16:66968434-66968578:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3579711914062	2	577.356891	1152.69923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.44	1	107.44	106.94	107.94	0.0067062								0	0	0	0.26334	1	28350	28350		2.0598	0.40713	1				18138	10336	10237	10238	23034	23034					0.12898750439103424
KGPRSARA	8	Unmodified	_KGPRSARA_					0	0	0		ENST00000522655.5_1_8:124279594-124287661:-|nuORF	REV__ENSG00000188070|ENST00000433688|ZFTA	REV__ENSG00000188070|ENST00000433688|ZFTA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.7512512207031	2	421.751393	841.488233	0.070738	2.9834E-05	-0.15315	-6.459E-05	-0.08241	-3.4756E-05	421.7513014375822	67.968	2.1611	68.046	67.515	69.676	0.078041					116	77	3	0	0	0	0.44569	1	17007	17007		7.2892	0.56607	1	550770			18139	18540	10238	10239	23035	23035					0.06114873397223164
KGPRYLLQ	8	Unmodified	_KGPRYLLQ_					0	0	0		ENSG00000112195|ENST00000483722|TREML2	ENSG00000112195|ENST00000483722|TREML2	ENSG00000112195|ENST00000483722|TREML2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.79083251953125	2	487.792727	973.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.388	1	75.356	74.856	75.856	-0.031487								0	0	0	0.36336	1	19352	19352		8.5933	1.304	1				18140	2420	10239	10240	23036	23036					0.08305770405377189
KGPSPRRA	8	Unmodified	_KGPSPRRA_					0	0	0			REV__ENST00000500733.6_1_5:38556997-38557237:+|nuORF	REV__ENST00000500733.6_1_5:38556997-38557237:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.759033203125	2	434.759218	867.503883	0.18568	8.0724E-05	-0.024381	-1.06E-05	0.16129	7.0124E-05	434.75923325651956	77.389	2.1331	77.389	76.643	78.776	0					206	79	5	0	0	0	0.44569	1	19900	19900		7.2892	2.5332	1	11154000	+		18141	21705	10240	10241	23037	23037					0.06483159914273529
KGPSPRRA	8	Unmodified	_KGPSPRRA_					0	0	0			REV__ENST00000500733.6_1_5:38556997-38557237:+|nuORF	REV__ENST00000500733.6_1_5:38556997-38557237:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7591552734375	2	434.759218	867.503883	0.33753	0.00014675	-0.21702	-9.4352E-05	0.12051	5.2394E-05	434.7591325606202	77.432	2.043	77.401	76.754	78.797	-0.031334					181	75	5	0	0	0	0.44389	1	20114	20114		7.9102	2.6795	1	11060000	+		18142	21705	10240	10241	23038	23038					0.06483159914273529
KGQFAEQLQG	10	Unmodified	_KGQFAEQLQG_					0	0	0			REV__ENSG00000160908|ENST00000337673|ZNF394	REV__ENSG00000160908|ENST00000337673|ZNF394	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.2840576171875	2	553.285463	1104.55637	0.12571	6.9555E-05	-1.3073	-0.0007233	-1.1816	-0.00065375	553.2849635123442	27.444	0.67767	27.423	27.188	27.865	-0.021412					38	23	2	0	0	0	0.38773	1	4691	4691		5.7319	0	1	355270	+		18143	16922	10241	10242	23039	23039					0.008276534665583313
KGQLHNRQE	9	Unmodified	_KGQLHNRQE_					0	0	0			REV__ENSG00000120937|ENST00000376468|NPPB	REV__ENSG00000120937|ENST00000376468|NPPB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2940063476562	2	555.294153	1108.57375	-0.061379	-3.4083E-05	-0.49444	-0.00027456	-0.55581	-0.00030864	555.2937860770135	13.808	0.42312	13.704	13.538	13.961	-0.10466					45	14	5	0	0	0	0.25988	1	550	550		3.9444	3.9444	1	124390	+		18144	15103	10242	10243	23040	23040					0.023809937922123936
KGRHSRSHRP	10	Unmodified	_KGRHSRSHRP_					0	0	0		ENST00000489057.1_1_1:156453152-156469309:-|nuORF	ENST00000489057.1_1_1:156453152-156469309:-|nuORF	ENST00000489057.1_1_1:156453152-156469309:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.88446044921875	3	406.562266	1216.66497	0.2272	9.2372E-05	1.9464	0.00079134	2.1736	0.00088371	406.5630933445472	20.704	0.24909	20.651	20.418	20.667	-0.05291					11	8	2	0	0	0	0.41025	1	2607	2607		1.5923	0.26264	1	32740			18145	11144	10243	10244	23041	23041					0.06530302280202704
KGRKLAREWQ	10	Unmodified	_KGRKLAREWQ_					0	0	0		ENSG00000205476|ENST00000380243|CCDC85C	ENSG00000205476|ENST00000380243|CCDC85C	ENSG00000205476|ENST00000380243|CCDC85C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.8711547851562	2	636.370195	1270.72584	0.3296	0.00020975	0.20679	0.0001316	0.53639	0.00034134	636.8711579865088	106.75	0.071968	106.74	106.7	106.77	-0.0060425					12	8	2	0	0	0	0.38515	1	28215	28215		6.2058	0.47393	1	1114600			18146	8291	10244	10245	23042	23042					0.1013039453980582
KGRKQIISL	9	Unmodified	_KGRKQIISL_					0	0	0		nc|ENSG00000114473|Q9H095-2|IQCG;ENSG00000114473|ENST00000265239|IQCG	nc|ENSG00000114473|Q9H095-2|IQCG	nc|ENSG00000114473|Q9H095-2|IQCG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2685546875	2	521.840208	1041.66586	0.68747	0.00035875	0.01367	7.1336E-06	0.70114	0.00036588	521.8402742494629	36.957	0.40694	37.05	36.79	37.197	0.093018					22	14	2	0	0	0	0.25526	1	7589	7589		4.3292	0	1	190910			18147	2567	10245	10246	23043	23043					0.14669703876575113
KGRKQRRK	8	Unmodified	_KGRKQRRK_					0	0	0		ENST00000447250.1_2_6:19804550-19804649:-|nuORF	ENST00000447250.1_2_6:19804550-19804649:-|nuORF	ENST00000447250.1_2_6:19804550-19804649:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2945556640625	2	528.84669	1055.67883	0.0919	4.8601E-05	1.6645	0.00088026	1.7564	0.00092886	528.8473079110174	13.001	0.11228	12.902	12.841	12.953	-0.099291					7	3	3	0	0	0	0.34437	1	295	295		0.69038	0	1	20873			18148	10603	10246	10247	23044	23044					0.15321579779310923
KGRPQRRRGQ	10	Unmodified	_KGRPQRRRGQ_					0	0	0			REV__nc|ENSG00000188827|Q8IY92-2|SLX4	REV__nc|ENSG00000188827|Q8IY92-2|SLX4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8685913085938	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.88	1	114.88	114.38	115.38	0								0	0	0	0.38166	1	29789	29789		1.4819	0	1		+		18149	18575	10247	10248	23045	23045					0.11346564205632603
KGRVKHHMT	9	Unmodified	_KGRVKHHMT_					0	0	0		ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.3060913085938	2	547.30601	1092.59747	0.13176	7.211E-05	0.13839	7.574E-05	0.27014	0.00014785	547.3061009557033	13.261	0.84133	13.194	12.905	13.746	-0.067496					65	29	3	0	0	0	0.34536	1	401	401		2.0598	1.535	1	1191900			18150	8335	10248	10249	23046	23046					0.05487136025044492
KGRVKHHMT	9	Unmodified	_KGRVKHHMT_					0	0	0		ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	547.30601	1092.59747	0.097771	5.3511E-05	-1.041	-0.00056973	-0.9432	-0.00051622	547.3061352726672	13.181	0.7378	13.181	13.003	13.74	0	-0.0028911	-0.0012558	NaN	2.0598	64	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1308800			18151	8335	10248	10249							0.05487136025044492
KGRVKHHMT	9	Unmodified	_KGRVKHHMT_					0	0	0		ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	ENSG00000213171|ENST00000368820|LINGO4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	547.30601	1092.59747	0.19525	0.00010686	0.1318	7.2133E-05	0.32705	0.00017899	547.3060581287347	13.276	0.73862	13.177	12.98	13.718	-0.099291	-0.006976	2.7967E-05	NaN	2.0598	63	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1350300			18152	8335	10248	10249							0.05487136025044492
KGSNVWLQY	9	Unmodified	_KGSNVWLQY_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7962646484375	2	547.785099	1093.55564	0.36114	0.00019783	0.080669	4.4189E-05	0.44181	0.00024201	547.7851713811735	52.361	0.83781	52.36	52.008	52.846	-0.00081253					38	30	2	0	0	0	0.27532	1	12381	12381		12.532	0	1	404880	+		18153	15880	10249	10250	23047	23047					0.012608588175226032
KGSNVWLQY	9	Unmodified	_KGSNVWLQY_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	547.785099	1093.55564	0.55286	0.00030285	0.29948	0.00016405	0.85234	0.0004669	547.7852121711384	52.093	0.48936	52.144	51.874	52.363	0.050571	-0.094781	4.6983E-05	NaN	12.532	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400310	+		18154	15880	10249	10250							0.012608588175226032
KGSNVWLQY	9	Unmodified	_KGSNVWLQY_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	547.785099	1093.55564	0.36114	0.00019783	0.080669	4.4189E-05	0.44181	0.00024201	547.7851713811735	52.361	0.83781	52.36	52.008	52.846	-0.00081253	0.12118	-0.00019274	NaN	12.532	38	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	404880	+		18155	15880	10249	10250							0.012608588175226032
KGSRIYLEGKI	11	Unmodified	_KGSRIYLEGKI_					0	0	0		ENSG00000106028|ENST00000265304|SSBP1;ENST00000489378.5_1_7:141438966-141445458:+|nuORF	ENSG00000106028|ENST00000265304|SSBP1	ENSG00000106028|ENST00000265304|SSBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.3753051757812	2	632.374612	1262.73467	0.59345	0.00037528	-0.31437	-0.0001988	0.27908	0.00017648	632.3744457092291	44.825	1.0056	44.825	44.552	45.558	0					87	36	4	0	0	0	0.44598	1	10087	10087		9.544	1.5986	1	3417700			18156	2049	10250	10251	23048	23048					0.113813233855808
KGSSNSYAIKK	11	Unmodified	_KGSSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.82763671875	2	591.827495	1181.64044	0.079219	4.6884E-05	0.1135	6.7175E-05	0.19272	0.00011406	591.8275604315859	13.162	0.47776	13.162	13.031	13.509	0					46	16	4	0	0	0	0.060763	1	338	338		50.13	23.862	1	734990			18157	1233	10251	10252	23049	23049					0.05688184563427967
KGSSNSYAIKK	11	Unmodified	_KGSSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.82763671875	2	591.827495	1181.64044	0.062292	3.6866E-05	0.23771	0.00014069	0.3	0.00017755	591.8275795047374	13.243	0.50789	13.144	13.011	13.519	-0.099291					44	17	4	0	0	0	0.0057759	1	370	370		78.61	45.825	1	727530			18158	1233	10251	10252	23050	23050					0.05688184563427967
KGSSNSYAIKK	11	Unmodified	_KGSSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.8275756835938	2	591.827495	1181.64044	-0.012924	-7.6486E-06	0.26579	0.0001573	0.25287	0.00014966	591.8276042375874	13.22	0.69514	13.153	12.965	13.66	-0.067496					56	24	4	0	0	0	0.030042	1	351	351		59.013	26.227	1	611650			18159	1233	10251	10252	23051	23051					0.05688184563427967
KGTLIPLYKP	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))KGTLIPLYKP_					1	0	0			REV__ENSG00000205883|ENST00000382208|DEFB135	REV__ENSG00000205883|ENST00000382208|DEFB135	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.358642578125	2	586.357899	1170.70125	0.50841	0.00029811	1.3314	0.00078068	1.8398	0.0010788	586.3585195616047	66.337	0.676	66.337	66.068	66.744	0					72	23	4	0	0	0	0.093201	2	16578	16578;16633		49.554	15.153	1	1197000	+		18160	19007	10252	10253	23052;23053	23052					0.12272321613704662
KGVHVELAEP	10	Unmodified	_KGVHVELAEP_					0	0	0			REV__ENST00000594859.5_1_19:18723732-18728463:+|nuORF	REV__ENST00000594859.5_1_19:18723732-18728463:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7987670898438	2	539.798206	1077.58186	0.088648	4.7852E-05	1.0244	0.00055295	1.113	0.0006008	539.798973340294	12.377	0.23813	12.309	12.196	12.434	-0.06806					10	7	2	0	0	0	0.40262	1	119	119		2.9952	0.69251	1	48286	+		18161	22588	10253	10254	23054	23054					0.046171279889904326
KGVHVELAEP	10	Unmodified	_KGVHVELAEP_					0	0	0			REV__ENST00000594859.5_1_19:18723732-18728463:+|nuORF	REV__ENST00000594859.5_1_19:18723732-18728463:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	539.798206	1077.58186	0.12286	6.6318E-05	-0.10888	-5.8773E-05	0.013977	7.5448E-06	539.7983236983894	12.347	0.15265	12.347	12.245	12.397	0	0.043798	-8.4415E-05	NaN	2.9952	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60454	+		18162	22588	10253	10254							0.046171279889904326
KGVHVELAEP	10	Unmodified	_KGVHVELAEP_					0	0	0			REV__ENST00000594859.5_1_19:18723732-18728463:+|nuORF	REV__ENST00000594859.5_1_19:18723732-18728463:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	539.798206	1077.58186	0.18238	9.8451E-05	-0.31256	-0.00016872	-0.13018	-7.0269E-05	539.798594136117	12.35	0.17532	12.253	12.148	12.324	-0.096607	-0.049908	-0.00030431	NaN	2.9952	17	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53411	+		18163	22588	10253	10254							0.046171279889904326
KGVHVELAEP	10	Unmodified	_KGVHVELAEP_					0	0	0			REV__ENST00000594859.5_1_19:18723732-18728463:+|nuORF	REV__ENST00000594859.5_1_19:18723732-18728463:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	539.798206	1077.58186	0.088648	4.7852E-05	1.0244	0.00055295	1.113	0.0006008	539.798973340294	12.377	0.23813	12.309	12.196	12.434	-0.06806	0.0061102	0.001139	NaN	2.9952	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48286	+		18164	22588	10253	10254							0.046171279889904326
KGWKEGTKITF	11	Unmodified	_KGWKEGTKITF_					0	0	0		nc|ENSG00000132002|P25685-2|DNAJB1;ENSG00000132002|ENST00000254322|DNAJB1;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;ENST00000487931.1_1_1:78444877-78481928:+|nuORF;ENSG00000162616|ENST00000370763|DNAJB4	nc|ENSG00000132002|P25685-2|DNAJB1	nc|ENSG00000132002|P25685-2|DNAJB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.8606567382812	2	647.861338	1293.70812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.85	1	103.85	103.35	104.35	0								0	0	0	0.36517	1	27581	27581		4.897	0.95262	1				18165	3604	10254	10255	23055	23055					0.0730163449425163
KGWRPETRM	9	Unmodified	_KGWRPETRM_					0	0	0			REV__ENST00000513440.5_1_4:56413129-56413264:-|nuORF	REV__ENST00000513440.5_1_4:56413129-56413264:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8050537109375	2	580.8033	1159.59205	-0.077214	-4.4846E-05	2.8584	0.0016601	2.7811	0.0016153	580.8050813016185	12.417	0.22302	12.417	12.303	12.526	0					13	6	3	0	0	0	0.33276	1	123	123		3.9444	0.3479	1	87561	+		18166	21825	10255	10256	23056	23056					0.018634124425489063
KGYKKLHLN	9	Unmodified	_KGYKKLHLN_					0	0	0			REV__ENST00000468677.5_1_13:20599458-20605462:+|nuORF	REV__ENST00000468677.5_1_13:20599458-20605462:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.3349609375	2	550.832383	1099.65021	-0.0046429	-2.5575E-06	0.24747	0.00013632	0.24283	0.00013376	550.8325776620129	13.152	0.78201	13.085	12.878	13.66	-0.067496					91	27	5	0	0	0	0.34681	1	293	293		1.8442	0	1	2026000	+		18167	21332	10256	10257	23057	23057					0.1043741735952608
KGYRGKKAT	9	Unmodified	_KGYRGKKAT_					0	0	0		ENSG00000198670|ENST00000316300|LPA	ENSG00000198670|ENST00000316300|LPA	ENSG00000198670|ENST00000316300|LPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.26416015625	2	504.801083	1007.58761	0.0090767	4.5819E-06	-0.89846	-0.00045354	-0.88939	-0.00044896	504.80075267325253	12.612	0.23973	12.515	12.462	12.702	-0.097283					10	7	2	0	0	0	0.26168	1	210	210		1.8442	0.36234	1	21290			18168	8099	10257	10258	23058	23058					0.08412271291331308
KGYSESAW	8	Unmodified	_KGYSESAW_					0	0	0		nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;nc|ENSG00000168502|Q9Y4B5-4|MTCL1	nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-4|MTCL1	nc|ENSG00000168502|Q9Y4B5-4|MTCL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7581481933594	2	464.213975	926.413397	-0.19898	-9.2367E-05	-1.0942	-0.00050796	-1.2932	-0.00060032	464.21338900361496	23.039	0.39749	22.952	22.711	23.108	-0.087608					16	13	2	0	0	0	0.34247	1	3335	3335		8.5933	0.68312	1	42850			18169	6280;12831	10258	10259	23059	23059					-0.052753539246623404
KHAKNPKVHF	10	Unmodified	_KHAKNPKVHF_					0	0	0		nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16	nc|ENSG00000041515|Q9Y6X6-3|MYO16	nc|ENSG00000041515|Q9Y6X6-3|MYO16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.3473510742188	2	603.348732	1204.68291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.489	1	94.489	93.989	94.989	0								0	0	0	0.37739	1	25202	25202		3.2813	0.78282	1				18170	606	10259	10260	23060	23060					0.08875624482334388
KHALYCRWMR	10	Unmodified	_KHALYCRWMR_					0	0	0		nc|ENSG00000197381|P78563-6|ADARB1;ENSG00000197381|ENST00000348831|ADARB1;nc|ENSG00000197381|P78563-3|ADARB1;nc|ENSG00000197381|P78563-4|ADARB1;nc|ENSG00000197381|P78563|ADARB1;nc|ENSG00000197381|P78563-5|ADARB1	nc|ENSG00000197381|P78563-6|ADARB1	nc|ENSG00000197381|P78563-6|ADARB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.900634765625	3	455.233993	1362.68015	-0.22445	-0.00010218	0.72084	0.00032815	0.49639	0.00022597	455.23449972281963	12.116	0.18317	12.116	12.011	12.194	0					20	9	4	0	0	0	0.32165	1	31	31		0.69767	0.42865	1	32101			18171	7958	10260	10261	23061	23061					0.013317097615299645
KHALYCRWMR	10	Unmodified	_KHALYCRWMR_					0	0	0		nc|ENSG00000197381|P78563-6|ADARB1;ENSG00000197381|ENST00000348831|ADARB1;nc|ENSG00000197381|P78563-3|ADARB1;nc|ENSG00000197381|P78563-4|ADARB1;nc|ENSG00000197381|P78563|ADARB1;nc|ENSG00000197381|P78563-5|ADARB1	nc|ENSG00000197381|P78563-6|ADARB1	nc|ENSG00000197381|P78563-6|ADARB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	455.233993	1362.68015	-0.096802	-4.4068E-05	0.58042	0.00026422	0.48361	0.00022016	455.2341722213937	12.114	0.14267	12.018	11.929	12.072	-0.096607	-0.049205	-0.00010652	NaN	0.69767	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31197			18172	7958	10260	10261							0.013317097615299645
KHCLYQLRLA	10	Unmodified	_KHCLYQLRLA_					0	0	0			REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.8484497070312	2	622.85025	1243.68595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.612	1	87.612	87.112	88.112	0								0	0	0	0.38166	1	23109	23109		1.4819	0	1		+		18173	15740	10261	10262	23062	23062					0.07385131544879187
KHDTKLKK	8	Unmodified	_KHDTKLKK_					0	0	0			REV__PWWP2A|p.L418Sfs*19|1|0.04|ENSG00000170234|chr5:160093399-160093400|-/CAGGACTTGAG|frameshift_variant	REV__PWWP2A|p.L418Sfs*19|1|0.04|ENSG00000170234|chr5:160093399-160093400|-/CAGGACTTGAG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7813720703125	2	499.311284	996.608014	0.47617	0.00023775	-0.41866	-0.00020904	0.057502	2.8711E-05	499.3111611076937	26.839	0.4747	26.828	26.595	27.07	-0.011562					27	16	2	0	0	0	0.34247	1	4434	4434		8.5933	2.8614	1	124480	+		18174	17565	10262	10263	23063	23063					0.10957441951120472
KHEGVVMIPL	10	Unmodified	_KHEGVVMIPL_					0	0	0			REV__ENSG00000085433|ENST00000369962|WDR47	REV__ENSG00000085433|ENST00000369962|WDR47	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2969360351562	2	561.820627	1121.6267	0.021962	1.2339E-05	3.3606	0.0018881	3.3826	0.0019004	561.8228864971621	13.18	0.40346	13.08	12.757	13.16	-0.099291					17	13	2	0	0	0	0.32139	1	310	310		1.3295	0	1	24567	+		18175	13959	10263	10264	23064	23064					0.07075235530692225
KHEKNLILIM	10	Unmodified	_KHEKNLILIM_					0	0	0			REV__ENST00000359028.6_1_7:91622214-91622265:+|nuORF	REV__ENST00000359028.6_1_7:91622214-91622265:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5818176269531	3	413.581164	1237.72166	0.43316	0.00017915	0.57987	0.00023982	1.013	0.00041897	413.58164939390105	84.298	0.83162	84.281	83.955	84.786	-0.016823					89	34	3	0	0	0	0.39935	1	22075	22075		1.7423	1.1154	1	508940	+		18176	20239	10264	10265	23065	23065					0.11231169001871422
KHEKNLILIM	10	Unmodified	_KHEKNLILIM_					0	0	0			REV__ENST00000359028.6_1_7:91622214-91622265:+|nuORF	REV__ENST00000359028.6_1_7:91622214-91622265:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	413.581164	1237.72166	0.4843	0.0002003	1.3098	0.00054169	1.7941	0.00074199	413.58166069820106	83.892	1.6972	83.969	83.274	84.971	0.077095	-0.156	7.9685E-05	NaN	1.7423	105	67	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359950	+		18177	20239	10264	10265							0.11231169001871422
KHEKNLILIM	10	Unmodified	_KHEKNLILIM_					0	0	0			REV__ENST00000359028.6_1_7:91622214-91622265:+|nuORF	REV__ENST00000359028.6_1_7:91622214-91622265:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	413.581164	1237.72166	0.43316	0.00017915	0.57987	0.00023982	1.013	0.00041897	413.58164939390105	84.298	0.83162	84.281	83.955	84.786	-0.016823	0.156	-0.00082592	NaN	1.7423	89	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	508940	+		18178	20239	10264	10265							0.11231169001871422
KHEKWESLF	9	Unmodified	_KHEKWESLF_					0	0	0			REV__ENSG00000185900|ENST00000331373|POMK	REV__ENSG00000185900|ENST00000331373|POMK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.7327270507812	2	602.31148	1202.60841	0.45399	0.00027345	1.9255	0.0011597	2.3795	0.0014332	602.31270357909	70.934	0.35896	70.909	70.69	71.049	-0.024864					20	12	2	0	0	0	0.24993	1	17953	17953		13.042	5.1323	1	219730	+		18179	18417	10265	10266	23066	23066					0.015208168803155786
KHFLPGIFM	9	Unmodified	_KHFLPGIFM_					0	0	0		ENST00000570265.5_1_15:36871929-37039277:+|nuORF	ENST00000570265.5_1_15:36871929-37039277:+|nuORF	ENST00000570265.5_1_15:36871929-37039277:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2991333007812	2	545.29933	1088.58411	0.1597	8.7087E-05	-0.30884	-0.00016841	-0.14914	-8.1323E-05	545.2991644369463	12.191	0.19331	12.122	12.032	12.226	-0.068059					17	8	3	0	0	0	0.34536	1	51	51		2.0598	0.40713	1	93783			18180	12020	10266	10267	23067	23067					0.04335885193108879
KHFPKLLPK	9	Unmodified	_KHFPKLLPK_					0	0	0		ENSG00000159363|ENST00000326735|ATP13A2;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;ENST00000466561.1_1_1:17313027-17318334:-|nuORF	ENSG00000159363|ENST00000326735|ATP13A2	ENSG00000159363|ENST00000326735|ATP13A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3555908203125	2	554.355494	1106.69644	0.69884	0.00038741	0.026393	1.4631E-05	0.72524	0.00040204	554.3553789110722	36.523	0.83566	36.609	36.3	37.135	0.08625					48	29	3	0	0	0	0.34681	1	7401	7401		1.8442	0	1	256120			18181	5403	10267	10268	23068	23068					0.14735482261608013
KHGADEKRL	9	Unmodified	_KHGADEKRL_					0	0	0		ENSG00000044524|ENST00000336596|EPHA3;EPHA3|p.K662Sfs*35|1|0.22|ENSG00000044524|chr3:89419298-89419298|A/-|frameshift_variant	ENSG00000044524|ENST00000336596|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7799682617188	2	527.293622	1052.57269	0.20467	0.00010792	0.47588	0.00025093	0.68056	0.00035885	527.2938912153965	14.625	0.39505	14.625	14.505	14.9	0					23	13	3	0	0	0	0.25988	1	751	751		3.9444	0.66309	1	80395			18182	622	10268	10269	23069	23069					0.04850779423327367
KHIPTALPVS	10	Unmodified	_KHIPTALPVS_					0	0	0		ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2	ENSG00000109756|ENST00000691494|RAPGEF2	ENSG00000109756|ENST00000691494|RAPGEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3250732421875	2	531.818941	1061.62333	0.6841	0.00036382	-4.1358	-0.0021995	-3.4517	-0.0018357	531.8162751877235	86.246	0.15526	86.246	86.149	86.305	0					6	5	2	0	0	0	0.29589	1	22675	22675		17.113	0.96379	1	52436			18183	2269	10269	10270	23070	23070					0.09498308748311501
KHIYAKLF	8	Unmodified	_KHIYAKLF_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8038330078125	2	510.30547	1018.59639	0.43627	0.00022263	-0.33023	-0.00016852	0.10604	5.4112E-05	510.3053268298584	75.187	0.62856	75.187	74.821	75.449	0					47	22	3	0	0	0	0.33245	1	19303	19303		13.508	0	1	472240			18184	7973	10270	10271	23071	23071					0.08783244927792566
KHKAKDDKKVI	11	Unmodified	_KHKAKDDKKVI_					0	0	0		ENSG00000136449|ENST00000323776|MYCBPAP;nc|ENSG00000136449|Q8TBZ2|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.5931091308594	3	437.269866	1308.78777	-0.098392	-4.3024E-05	-0.34805	-0.00015219	-0.44644	-0.00019522	437.26982122658313	22.135	0.67218	22.135	21.922	22.594	0					62	23	4	0	0	0	0.3299	1	3035	3035		9.7643	0	1	293080			18185	3975	10271	10272	23072	23072					0.14572701168253843
KHKALGSFTS	10	Unmodified	_KHKALGSFTS_					0	0	0			REV__ENSG00000019549|ENST00000020945|SNAI2	REV__ENSG00000019549|ENST00000020945|SNAI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2982177734375	2	538.298373	1074.58219	0.44627	0.00024023	-0.63744	-0.00034313	-0.19118	-0.00010291	538.2979416914756	17.475	0.33183	17.475	17.296	17.628	0					22	11	2	0	0	0	0.39009	1	1659	1659		5.2969	0.96765	1	102960	+		18186	13459	10272	10273	23073	23073					0.047885477088584594
KHKALGSFTS	10	Unmodified	_KHKALGSFTS_					0	0	0			REV__ENSG00000019549|ENST00000020945|SNAI2	REV__ENSG00000019549|ENST00000020945|SNAI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.298095703125	2	538.298373	1074.58219	0.45938	0.00024728	-0.98547	-0.00053047	-0.52608	-0.00028319	538.2978015741587	17.568	0.43609	17.507	17.33	17.766	-0.060429					24	14	2	0	0	0	0.34053	1	1685	1685		14.405	2.1647	1	120810	+		18187	13459	10272	10273	23074	23074					0.047885477088584594
KHKHKRRFF	9	Unmodified	_KHKHKRRFF_					0	0	0			REV__ENST00000459739.5_1_10:79553706-79569486:-|nuORF	REV__ENST00000459739.5_1_10:79553706-79569486:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.3840942382812	2	642.38344	1282.75233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.611	1	96.611	96.111	97.111	0								0	0	0	0.2672	1	25817	25817		0.52476	0.066424	1		+		18188	16531	10273	10274	23075	23075					0.12226128221777799
KHKHKRRFF	9	Unmodified	_KHKHKRRFF_					0	0	0			REV__ENST00000459739.5_1_10:79553706-79569486:-|nuORF	REV__ENST00000459739.5_1_10:79553706-79569486:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.3843994140625	2	642.38344	1282.75233	0.46023	0.00029564	0.44235	0.00028416	0.90258	0.0005798	642.3836974216624	91.987	0.52907	92.078	91.808	92.337	0.090675					55	33	2	0	0	0	0.33018	1	24440	24440		4.3292	0	1	140770	+		18189	16531	10273	10274	23076	23076					0.12226128221777799
KHKKVKHP	8	Unmodified	_KHKKVKHP_					0	0	0			REV__ENSG00000171495|ENST00000399564|MROH2B	REV__ENSG00000171495|ENST00000399564|MROH2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7900695800781	2	501.321986	1000.62942	0.038313	1.9207E-05	-0.91844	-0.00046043	-0.88013	-0.00044123	501.32139120051414	14.125	0.3728	14.125	13.992	14.365	0					17	12	2	0	0	0	0.34408	1	693	693		2.3027	1.5091	1	168960	+		18190	17643	10274	10275	23077	23077					0.12912871770504353
KHKKVKHP	8	Unmodified	_KHKKVKHP_					0	0	0			REV__ENSG00000171495|ENST00000399564|MROH2B	REV__ENSG00000171495|ENST00000399564|MROH2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7900695800781	2	501.321986	1000.62942	-0.0048207	-2.4167E-06	-1.0114	-0.00050702	-1.0162	-0.00050944	501.3212899726484	14.205	0.39308	14.139	14.007	14.4	-0.066068					25	13	3	0	0	0	0.34408	1	724	724		2.3027	1.6124	1	120620	+		18191	17643	10274	10275	23078	23078					0.12912871770504353
KHKLVRDTR	9	Unmodified	_KHKLVRDTR_					0	0	0			REV__ZNF148|p.Q640Sfs*7|1|0.36|ENSG00000163848|chr3:125232809-125232809|A/-|frameshift_variant	REV__ZNF148|p.Q640Sfs*7|1|0.36|ENSG00000163848|chr3:125232809-125232809|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.8515014648438	2	576.851638	1151.68872	-0.11945	-6.8904E-05	-0.038273	-2.2078E-05	-0.15772	-9.0982E-05	576.8515515787885	12.185	0.27705	12.185	12.087	12.364	0					26	11	3	0	0	0	0.26612	1	58	58		13.906	0.86358	1	176620	+		18192	17095	10275	10276	23079	23079					0.11894722994020412
KHKQTLPF	8	Unmodified	_KHKQTLPF_					0	0	0			REV__ENST00000468398.1_1_3:149047933-149051100:-|nuORF	REV__ENST00000468398.1_1_3:149047933-149051100:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2588806152344	2	499.792727	997.5709	0.63996	0.00031985	-0.38273	-0.00019128	0.25724	0.00012857	499.79251601931253	55.055	0.42661	55.118	54.863	55.29	0.063202					25	15	2	0	0	0	0.31375	1	13131	13131		26.341	5.4701	1	662750	+		18193	21326	10276	10277	23080	23080					0.07201770405379193
KHKTLTSSL	9	Unmodified	_KHKTLTSSL_					0	0	0			REV__ENST00000380882.5_4:85656-87337:+|nuORF	REV__ENST00000380882.5_4:85656-87337:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2622985839844	2	507.800749	1013.58694	-0.15418	-7.8295E-05	0.21552	0.00010944	0.061341	3.1149E-05	507.80109647736083	12.16	0.33057	12.091	11.951	12.281	-0.06806					20	14	2	0	0	0	0.26031	1	71	71		3.5965	1.2938	1	47148	+		18194	19318	10277	10278	23081	23081					0.0806943185162936
KHLHMNKT	8	Unmodified	_KHLHMNKT_					0	0	0			REV__nc|ENSG00000068400|Q4V328-4|GRIPAP1	REV__nc|ENSG00000068400|Q4V328-4|GRIPAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.773193359375	2	504.774011	1007.53347	0.2779	0.00014028	-0.87607	-0.00044222	-0.59816	-0.00030194	504.7734770798633	41.684	0.91448	41.684	41.252	42.166	0					68	37	2	0	0	0	0.42077	2	9050	9050;9064		15.847	1.9411	1	2975800	+		18195	13700	10278	10279	23082;23083	23082					0.030003558681187315
KHLHMNKT	8	Unmodified	_KHLHMNKT_					0	0	0			REV__nc|ENSG00000068400|Q4V328-4|GRIPAP1	REV__nc|ENSG00000068400|Q4V328-4|GRIPAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7734069824219	2	504.774011	1007.53347	0.29421	0.00014851	-0.95243	-0.00048076	-0.65822	-0.00033225	504.7735797144009	41.573	1.0617	41.663	41.35	42.412	0.090248					73	42	2	0	0	0	0.41097	1	8938	8938		18.135	2.2878	1	3314900	+		18196	13700	10278	10279	23084	23084					0.030003558681187315
KHLIWNWSR	9	Unmodified	_KHLIWNWSR_					0	0	0			REV__ENST00000606522.1_1_6:10744394-10747789:-|nuORF	REV__ENST00000606522.1_1_6:10744394-10747789:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3434448242188	2	620.340907	1238.66726	0.0086528	5.3677E-06	3.7192	0.0023072	3.7279	0.0023126	620.3434409212653	15.814	0.36839	15.749	15.573	15.942	-0.064413					29	12	3	0	0	0	0.32885	1	1159	1159		3.9444	0.66309	1	71288	+		18197	22662	10279	10280	23085	23085					0.05747337965294719
KHLIWNWSR	9	Unmodified	_KHLIWNWSR_					0	0	0			REV__ENST00000606522.1_1_6:10744394-10747789:-|nuORF	REV__ENST00000606522.1_1_6:10744394-10747789:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	620.340907	1238.66726	-0.1064	-6.6006E-05	1.8698	0.0011599	1.7634	0.0010939	620.3433190332958	15.874	0.35004	15.765	15.549	15.899	-0.10981	-0.015135	-0.0031494	NaN	3.9444	27	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39170	+		18198	22662	10279	10280							0.05747337965294719
KHLIWNWSR	9	Unmodified	_KHLIWNWSR_					0	0	0			REV__ENST00000606522.1_1_6:10744394-10747789:-|nuORF	REV__ENST00000606522.1_1_6:10744394-10747789:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	620.340907	1238.66726	0.0086528	5.3677E-06	3.7192	0.0023072	3.7279	0.0023126	620.3434409212653	15.814	0.36839	15.749	15.573	15.942	-0.064413	-0.030575	-0.00085484	NaN	3.9444	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71288	+		18199	22662	10279	10280							0.05747337965294719
KHLNWHEVAI	10	Unmodified	_KHLNWHEVAI_					0	0	0			REV__ENSG00000007216|ENST00000314669|SLC13A2	REV__ENSG00000007216|ENST00000314669|SLC13A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.8642272949219	3	416.22789	1245.66184	0.085286	3.5498E-05	-0.27294	-0.0001136	-0.18765	-7.8106E-05	416.22772423571524	22.026	0.63137	21.976	21.52	22.151	-0.049377					35	22	2	0	0	0	0.32082	1	3056	3056		3.3196	0.24738	1	104070	+		18200	13383	10280	10281	23086	23086					0.04883614382856649
KHLNWHEVAI	10	Unmodified	_KHLNWHEVAI_					0	0	0			REV__ENSG00000007216|ENST00000314669|SLC13A2	REV__ENSG00000007216|ENST00000314669|SLC13A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	416.22789	1245.66184	0.22919	9.5394E-05	-0.21459	-8.9317E-05	0.014601	6.0773E-06	416.56214613817497	22.014	0.47105	21.913	21.682	22.154	-0.10034	-0.11786	4.4011E-05	NaN	3.3196	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116320	+		18201	13383	10280	10281							0.04883614382856649
KHLPLRVSTRR	11	Unmodified	_KHLPLRVSTRR_					0	0	0		ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.28399658203125	3	454.952872	1361.83679	0.23669	0.00010768	-1.097	-0.00049909	-0.86032	-0.0003914	454.95245461578014	87.971	0.4491	87.968	87.759	88.208	-0.0028458					35	24	2	0	0	0	0.33347	1	23219	23219		0.45452	0.45452	1	178210			18202	7008	10281	10282	23087	23087					0.17034034247876662
KHLTLSLKNNK	11	Unmodified	_KHLTLSLKNNK_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	648.3931884765625	2	648.393336	1294.77212	0.069693	4.5189E-05	-0.026305	-1.7056E-05	0.043388	2.8132E-05	648.3933653466829	98.863	1.1234	98.863	98.462	99.586	0					315	135	4	0	0	0	0.46554	1	26452	26452		1.1933	0	1	483420	+		18203	18995	10282	10283	23088	23088					0.13652414651232903
KHLVFGKK	8	Unmodified	_KHLVFGKK_					0	0	0			REV__ENST00000484880.1_1_1:67885652-67890638:-|nuORF	REV__ENST00000484880.1_1_1:67885652-67890638:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.9217224121094	2	478.805637	955.596721	-1.0027	-0.00048011	1.4237	0.00068168	0.42099	0.00020157	478.8061890953445	34.878	0.93799	34.878	34.528	35.466	0					62	33	2	0	0	0	0.34337	1	7097	7097		5.2307	0.47466	1	223880	+		18204	16138	10283	10284	23089	23089					0.11714664647661266
KHLVFGKK	8	Unmodified	_KHLVFGKK_					0	0	0			REV__ENST00000484880.1_1_1:67885652-67890638:-|nuORF	REV__ENST00000484880.1_1_1:67885652-67890638:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.92138671875	2	478.805637	955.596721	-0.58842	-0.00028174	1.2545	0.00060067	0.66609	0.00031893	478.80606829519644	34.772	0.97306	34.85	34.444	35.418	0.077377					66	34	2	0	0	0	0.34337	1	7007	7007		5.2307	0	1	162310	+		18205	16138	10283	10284	23090	23090					0.11714664647661266
KHLVSFIIYI	10	Unmodified	_KHLVSFIIYI_					0	0	0		ENST00000245479.2_1_17:70121293-70121485:+|nuORF	ENST00000245479.2_1_17:70121293-70121485:+|nuORF	ENST00000245479.2_1_17:70121293-70121485:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.88421630859375	3	411.584903	1231.73288	-0.1025	-4.2187E-05	-2.0136	-0.00082878	-2.1161	-0.00087096	411.5840435065619	20.004	0.40029	20.004	19.713	20.113	0					25	14	2	0	0	0	0.31696	1	2417	2417		6.6304	2.754	1	93118			18206	8900	10284	10285	23091	23091					0.12628314367657367
KHMIKYRY	8	Unmodified	_KHMIKYRY_					0	0	0		ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.2445068359375	2	569.813136	1137.61172	-0.10936	-6.2316E-05	2.2592	0.0012873	2.1498	0.001225	569.8146661253203	13.841	0.26131	13.774	13.687	13.949	-0.066068					17	8	3	0	0	0	0.34353	1	565	565		4.756	0.42677	1	48022			18207	5333	10285	10286	23092	23092					0.048417884533364486
KHMRFLIT	8	Unmodified	_KHMRFLIT_					0	0	0		nc|ENSG00000184489|O75365-3|PTP4A3;nc|ENSG00000184489|O75365-2|PTP4A3;ENSG00000184489|ENST00000521578|PTP4A3	nc|ENSG00000184489|O75365-3|PTP4A3	nc|ENSG00000184489|O75365-3|PTP4A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3057861328125	2	523.302404	1044.59026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.003	1	85.084	84.584	85.584	0.080887								0	0	0	0.30279	1	22303	22303		28.487	5.7506	1				18208	7456	10286	10287	23093	23093					0.06974403424624143
KHMWIRGKR	9	Unmodified	_KHMWIRGKR_					0	0	0			REV__nc|nan|Q96LT7-2|C9orf72	REV__nc|nan|Q96LT7-2|C9orf72	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3706665039062	2	606.350751	1210.68695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.09	1	115.11	114.61	115.61	0.018738								0	0	0	0.2672	1	29912	29912		0.52476	0.066424	1		+		18209	16408	10287	10288	23094	23094					0.09003390704401681
KHPQHVCL	8	Unmodified	_KHPQHVCL_					0	0	0		ENST00000281182.8_1_11:134127115-134128426:+|nuORF	ENST00000281182.8_1_11:134127115-134128426:+|nuORF	ENST00000281182.8_1_11:134127115-134128426:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.270751953125	2	481.255454	960.496355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.105	1	60.105	59.605	60.605	0								0	0	0	0.33941	1	14678	14678		19.439	0	1				18210	9120	10288	10289	23095	23095					0.014526843223507058
KHPRSHLE	8	Unmodified	_KHPRSHLE_					0	0	0			REV__ENSG00000204186|ENST00000374423|ZDBF2	REV__ENSG00000204186|ENST00000374423|ZDBF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2647399902344	2	502.275232	1002.53591	0.40482	0.00020333	-1.5012	-0.00075399	-1.0963	-0.00055066	502.27380836952796	88.278	0.23853	88.275	88.165	88.403	-0.0028381					13	11	2	0	0	0	0.42758	1	23276	23276		13.508	0.97634	1	47242	+		18211	18925	10289	10290	23096	23096					0.034745275974159995
KHPRSHLE	8	Unmodified	_KHPRSHLE_					0	0	0			REV__ENSG00000204186|ENST00000374423|ZDBF2	REV__ENSG00000204186|ENST00000374423|ZDBF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	502.275232	1002.53591	0.49133	0.00024678	-2.0071	-0.0010081	-1.5158	-0.00076134	502.77613665981914	88.341	0.090591	88.341	88.259	88.349	0	0.033047	-0.0002165	NaN	13.508	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45973	+		18212	18925	10289	10290							0.034745275974159995
KHPRSHLE	8	Unmodified	_KHPRSHLE_					0	0	0			REV__ENSG00000204186|ENST00000374423|ZDBF2	REV__ENSG00000204186|ENST00000374423|ZDBF2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	502.275232	1002.53591	0.40482	0.00020333	-1.5012	-0.00075399	-1.0963	-0.00055066	502.27380836952796	88.278	0.23853	88.275	88.165	88.403	-0.0028381	-0.033047	0.00029175	NaN	13.508	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47242	+		18213	18925	10289	10290							0.034745275974159995
KHQILYSFWTF	11	Unmodified	_KHQILYSFWTF_					0	0	0			REV__ENSG00000197472|ENST00000339986|ZNF695	REV__ENSG00000197472|ENST00000339986|ZNF695	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.26470947265625	3	490.590717	1468.75032	0.35823	0.00017574	-2.8701	-0.0014081	-2.5119	-0.0012323	490.58956997881313	90.728	0.060684	90.728	90.698	90.758	0					6	4	2	0	0	0	0.3333	1	24058	24058		1.3296	0.31607	1	59004	+		18214	18739	10290	10291	23097	23097					0.034696099026405136
KHQQHVRL	8	Unmodified	_KHQQHVRL_					0	0	0			REV__nc|ENSG00000148143|Q96JM2-3|ZNF462	REV__nc|ENSG00000148143|Q96JM2-3|ZNF462	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3170776367188	2	523.304324	1044.5941	0.67482	0.00035314	-2.0088	-0.0010512	-1.334	-0.00069807	523.3034366438192	84.564	0.25822	84.645	84.522	84.78	0.080879					14	9	2	0	0	0	0.34337	1	22151	22151		5.2307	0	1	115310	+		18215	16414	10291	10292	23098	23098					0.0735820924271593
KHRNERKLSV	10	Unmodified	_KHRNERKLSV_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8716430664062	2	633.873102	1265.73165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.18	1	115.18	114.68	115.68	0								0	0	0	0.38187	1	29858	29858		1.3295	0	1				18216	587	10292	10293	23099	23099					0.1094149305145038
KHRQDLTV	8	Unmodified	_KHRQDLTV_					0	0	0		ENSG00000255855|ENST00000545950|KDM4F	ENSG00000255855|ENST00000545950|KDM4F	ENSG00000255855|ENST00000545950|KDM4F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.9389953613281	2	498.78289	995.551228	0.16682	8.3209E-05	-0.96207	-0.00047986	-0.79524	-0.00039665	498.7830956817401	15.748	0.50709	15.748	15.528	16.035	0					30	17	3	0	0	0	0.34408	1	1163	1163		2.3027	0	1	48734			18217	8622	10293	10294	23100	23100					0.05327394394601015
KHRQDLTV	8	Unmodified	_KHRQDLTV_					0	0	0		ENSG00000255855|ENST00000545950|KDM4F	ENSG00000255855|ENST00000545950|KDM4F	ENSG00000255855|ENST00000545950|KDM4F	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	498.78289	995.551228	0.16566	8.2627E-05	-0.00049844	-2.4861E-07	0.16516	8.2378E-05	498.7827812828083	15.916	0.50245	15.802	15.544	16.047	-0.11434	0.03383	9.1291E-05	NaN	2.3027	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53353			18218	8622	10293	10294							0.05327394394601015
KHRQDLTV	8	Unmodified	_KHRQDLTV_					0	0	0		ENSG00000255855|ENST00000545950|KDM4F	ENSG00000255855|ENST00000545950|KDM4F	ENSG00000255855|ENST00000545950|KDM4F	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.78289	995.551228	0.1632	8.1404E-05	0.35838	0.00017875	0.52159	0.00026016	498.78296891564923	15.819	0.51918	15.754	15.517	16.036	-0.064414	-0.013557	0.0004493	NaN	2.3027	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44464			18219	8622	10293	10294							0.05327394394601015
KHSKLHKH	8	Unmodified	_KHSKLHKH_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2622375488281	2	507.801417	1013.58828	-0.037271	-1.8926E-05	-1.6637	-0.00084484	-1.701	-0.00086377	507.80068164762963	12.159	0.21663	12.159	12.087	12.303	0					15	9	2	0	0	0	0.34378	1	66	66		3.9444	1.6417	1	36240			18220	6500	10294	10295	23101	23101					0.08203110731028573
KHTERVAARAK	11	Unmodified	_KHTERVAARAK_					0	0	0			REV__ENSG00000186310|ENST00000373079|NAP1L3	REV__ENSG00000186310|ENST00000373079|NAP1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8713989257812	2	633.873102	1265.73165	-0.063259	-4.0098E-05	1.4433	0.00091486	1.38	0.00087477	634.3770361623797	112.12	0.14257	112.12	112.04	112.18	0					34	17	3	0	0	0	0.47742	1	29161	29161		1.0715	0.10919	1	37320	+		18221	18442	10295	10296	23102	23102					0.1094149305145038
KHTERVAARAK	11	Unmodified	_KHTERVAARAK_					0	0	0			REV__ENSG00000186310|ENST00000373079|NAP1L3	REV__ENSG00000186310|ENST00000373079|NAP1L3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8728637695312	2	633.873102	1265.73165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114	1	114	113.5	114.5	0								0	0	0	0.38126	1	29594	29594		1.1933	0.66858	1		+		18222	18442	10295	10296	23103	23103					0.1094149305145038
KHTERVAARAK	11	Unmodified	_KHTERVAARAK_					0	0	0			REV__ENSG00000186310|ENST00000373079|NAP1L3	REV__ENSG00000186310|ENST00000373079|NAP1L3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8721923828125	2	633.873102	1265.73165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.18	1	118.21	117.71	118.71	0.023476								0	0	0	0.38137	1	30611	30611		1.0715	0.5467	1		+		18223	18442	10295	10296	23104	23104					0.1094149305145038
KHTFEKMTTS	10	Unmodified	_KHTFEKMTTS_					0	0	0		ADGRG4|p.K2380Nfs*2|1|0.45|ENSG00000156920|chrX:136359446-136359446|A/-|frameshift_variant;nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ENSG00000156920|ENST00000394143|ADGRG4	ADGRG4|p.K2380Nfs*2|1|0.45|ENSG00000156920|chrX:136359446-136359446|A/-|frameshift_variant	ADGRG4|p.K2380Nfs*2|1|0.45|ENSG00000156920|chrX:136359446-136359446|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.1882019042969	3	403.869262	1208.58596	-0.23995	-9.6908E-05	3.7345	0.0015083	3.4946	0.0014114	404.2068182658012	23.75	0.1006	23.75	23.699	23.8	0					4	2	2	0	0	0	0.31745	1	3539	3539		5.0475	2.7647	1	9527.1			18224	17	10296	10297	23105	23105					-0.00999150579605157
KHVKRREKK	9	Unmodified	_KHVKRREKK_					0	0	0		ENST00000590234.5_1_18:47810059-47811374:-|nuORF;ENST00000590901.5_1_18:47808965-47812340:-|nuORF;ENSG00000154832|ENST00000285106|CXXC1;nc|ENSG00000154832|Q9P0U4-2|CXXC1	ENST00000590234.5_1_18:47810059-47811374:-|nuORF	ENST00000590234.5_1_18:47810059-47811374:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2225341796875	3	403.594796	1207.76256	-0.5631	-0.00022726	0.51203	0.00020665	-0.051072	-2.0612E-05	403.594793719205	12.545	0.62474	12.477	12.226	12.851	-0.06806					32	20	3	0	0	0	0.26275	1	221	221		0.23584	0	1	87534			18225	5148	10297	10298	23106	23106					0.16698691156352652
KHWQINRN	8	Unmodified	_KHWQINRN_					0	0	0			REV__nc|ENSG00000184809|P59052-2|B3GALT5-AS1	REV__nc|ENSG00000184809|P59052-2|B3GALT5-AS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7823486328125	2	548.293956	1094.57336	0.21315	0.00011687	3.3152	0.0018177	3.5284	0.0019346	548.2961080843786	12.673	0.40717	12.574	12.433	12.841	-0.099291					18	13	2	0	0	0	0.34437	1	168	168		0.69038	0	1	48209	+		18226	23136	10298	10299	23107	23107					0.029856188630446923
KHYHKAKEYI	10	Unmodified	_KHYHKAKEYI_					0	0	0			REV__ENST00000421245.2_1_X:72755416-72755509:+|nuORF	REV__ENST00000421245.2_1_X:72755416-72755509:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.57525634765625	3	439.575178	1315.70371	-0.57245	-0.00025164	0.39997	0.00017581	-0.17249	-7.5822E-05	439.5752654740915	34.418	0.92976	34.418	34.104	35.033	0					94	32	4	0	0	0	0.36368	1	6762	6762		10.151	1.7063	1	664550	+		18227	16396	10299	10300	23108	23108					0.05848170071385539
KHYHKAKEYI	10	Unmodified	_KHYHKAKEYI_					0	0	0			REV__ENST00000421245.2_1_X:72755416-72755509:+|nuORF	REV__ENST00000421245.2_1_X:72755416-72755509:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.5751647949219	3	439.575178	1315.70371	-0.20798	-9.1421E-05	-0.03204	-1.4084E-05	-0.24002	-0.00010551	439.57510909583914	34.254	0.92252	34.321	34.071	34.994	0.066704					92	32	4	0	0	0	0.38284	1	6747	6747		6.6304	0.43853	1	685710	+		18228	16396	10299	10300	23109	23109					0.05848170071385539
KHYKREECD	9	Unmodified	_KHYKREECD_					0	0	0		ENST00000397121.2_1_19:22362411-22362768:-|nuORF	ENST00000397121.2_1_19:22362411-22362768:-|nuORF	ENST00000397121.2_1_19:22362411-22362768:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.19012451171875	3	403.188995	1206.54516	0.15275	6.1585E-05	2.0014	0.00080694	2.1541	0.00086852	403.1900952105588	55.683	1.1563	55.683	54.917	56.074	0					90	41	4	0	0	0	0.31164	1	13359	13359		7.1017	0.064636	1	1697700			18229	10132	10300	10301	23110	23110					-0.04985491899219596
KHYVQNAIRDL	11	Unmodified	_KHYVQNAIRDL_					0	0	0		nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1;ENSG00000198885|ENST00000439118|ITPRIPL1;nc|ENSG00000198885|Q6GPH6-2|ITPRIPL1	nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1	nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.9173583984375	3	452.917604	1355.73098	0.24994	0.0001132	-0.59377	-0.00026893	-0.34384	-0.00015573	452.9172976549104	37.149	0.6572	37.236	36.841	37.498	0.08741					54	23	3	0	0	0	0.41517	1	7635	7635		9.2438	2.6203	1	448010			18230	8150	10301	10302	23111	23111					0.06734653611738395
KHYVQNAIRDL	11	Unmodified	_KHYVQNAIRDL_					0	0	0		nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1;ENSG00000198885|ENST00000439118|ITPRIPL1;nc|ENSG00000198885|Q6GPH6-2|ITPRIPL1	nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1	nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	452.917604	1355.73098	0.55459	0.00025118	-1.1073	-0.00050152	-0.55273	-0.00025034	453.25151614973623	37.261	0.63061	37.261	36.93	37.56	0	0.025842	-0.00032668	NaN	9.2438	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	441960			18231	8150	10301	10302							0.06734653611738395
KHYVQNAIRDL	11	Unmodified	_KHYVQNAIRDL_					0	0	0		nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1;ENSG00000198885|ENST00000439118|ITPRIPL1;nc|ENSG00000198885|Q6GPH6-2|ITPRIPL1	nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1	nc|ENSG00000198885|Q6GPH6-3|ITPRIPL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	452.917604	1355.73098	0.38288	0.00017341	-0.75138	-0.00034031	-0.3685	-0.0001669	452.917177201104	37.115	0.59996	37.208	36.898	37.498	0.093018	-0.026925	0.00015694	NaN	9.2438	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	423840			18232	8150	10301	10302							0.06734653611738395
KIACYTDRIY	10	Unmodified	_KIACYTDRIY_					0	0	0		ENST00000411496.1_2_21:38529478-38529514:+|nuORF	ENST00000411496.1_2_21:38529478-38529514:+|nuORF	ENST00000411496.1_2_21:38529478-38529514:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.8804016113281	3	415.881391	1244.62234	-1.3069	-0.00054353	-0.50609	-0.00021047	-1.813	-0.000754	415.88127974806685	34.639	0.71726	34.714	34.326	35.043	0.075306					57	25	3	0	0	0	0.3994	1	6862	6862		3.5871	3.5871	1	456600			18233	10269	10302	10303	23112	23112					0.009817263171044033
KIADRFLLY	9	Unmodified	_KIADRFLLY_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3084716796875	2	569.834591	1137.65463	0.31039	0.00017687	-0.22276	-0.00012694	0.087625	4.9932E-05	569.8346691665876	52.661	0.38306	52.661	52.523	52.906	0					31	13	3	0	0	0	0.14646	1	12356	12356		29.841	8.3036	1	382570			18234	4475	10303	10304	23113	23113					0.09130881782425604
KIADRFLLY	9	Unmodified	_KIADRFLLY_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3086547851562	2	569.834591	1137.65463	0.51504	0.00029349	-0.39351	-0.00022424	0.12153	6.9253E-05	569.834544263266	52.574	0.5195	52.624	52.417	52.936	0.050571					29	18	2	0	0	0	0.22701	1	12334	12334		18.373	6.8784	1	498190			18235	4475	10303	10304	23114	23114					0.09130881782425604
KIADRFLLY	9	Unmodified	_KIADRFLLY_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.3084716796875	2	569.834591	1137.65463	0.22699	0.00012935	0.11807	6.728E-05	0.34506	0.00019663	569.8347967275448	52.819	0.42539	52.818	52.639	53.065	-0.00080872					36	15	3	0	0	0	0.089483	1	12427	12427		59.368	23.324	1	514730			18236	4475	10303	10304	23115	23115					0.09130881782425604
KIAGYVTHL	9	Unmodified	_KIAGYVTHL_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000560639.1_1_15:83207600-83209179:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.292724609375	2	501.292559	1000.57057	-0.19888	-9.9696E-05	0.35028	0.00017559	0.1514	7.5897E-05	501.2926292005714	35.287	0.54268	35.287	35.062	35.604	0					30	19	2	0	0	0	0.07432	1	7080	7080		43.858	3.901	1	298450			18237	7316	10304	10305	23116	23116					0.07030350685522535
KIAGYVTHL	9	Unmodified	_KIAGYVTHL_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000560639.1_1_15:83207600-83209179:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	501.292559	1000.57057	-0.1967	-9.8603E-05	0.63268	0.00031716	0.43599	0.00021856	501.29282993681556	35.351	0.3844	35.427	35.097	35.481	0.075306	0.096561	-4.0727E-05	NaN	43.858	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273240			18238	7316	10304	10305							0.07030350685522535
KIAGYVTHL	9	Unmodified	_KIAGYVTHL_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000560639.1_1_15:83207600-83209179:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	501.292559	1000.57057	-0.44363	-0.00022239	0.88669	0.00044449	0.44306	0.0002221	501.29277947123956	35.199	0.40665	35.276	35.06	35.467	0.077377	-0.053726	0.00021393	NaN	43.858	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196240			18239	7316	10304	10305							0.07030350685522535
KIAKFQRALH	10	Unmodified	_KIAKFQRALH_					0	0	0			REV__nc|ENSG00000130558|Q99784-5|OLFM1	REV__nc|ENSG00000130558|Q99784-5|OLFM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3703002929688	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.39	1	114.39	113.89	114.89	0								0	0	0	0.38202	1	29680	29680		0.40072	0	1		+		18240	15463	10305	10306	23117	23117					0.13292484033490837
KIAKFQRALH	10	Unmodified	_KIAKFQRALH_					0	0	0			REV__nc|ENSG00000130558|Q99784-5|OLFM1	REV__nc|ENSG00000130558|Q99784-5|OLFM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.37060546875	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.59	1	117.59	117.09	118.09	0								0	0	0	0.38202	1	30405	30405		0.40072	0.050084	1		+		18241	15463	10305	10306	23118	23118					0.13292484033490837
KIAKFQRALH	10	Unmodified	_KIAKFQRALH_					0	0	0			REV__nc|ENSG00000130558|Q99784-5|OLFM1	REV__nc|ENSG00000130558|Q99784-5|OLFM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3704223632812	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.68	1	112.66	112.16	113.16	-0.015625								0	0	0	0.38202	1	29308	29308		0.40072	0.050084	1		+		18242	15463	10305	10306	23119	23119					0.13292484033490837
KIAWDLPKF	9	Unmodified	_KIAWDLPKF_					0	0	0		ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;ENST00000520647.5_1_5:153755841-153792087:+|nuORF;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.754150390625	2	559.32386	1116.63317	0.18581	0.00010393	-0.064581	-3.6122E-05	0.12123	6.7807E-05	559.3234269486592	67.733	0.67861	67.717	67.262	67.941	-0.016296					45	22	3	0	0	0	0.24848	1	17014	17014		13.906	0	1	313930			18243	5852	10306	10307	23120	23120					0.07951496753685205
KIDDTIRYL	9	Unmodified	_KIDDTIRYL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.8192138671875	2	568.819138	1135.62372	0.52952	0.0003012	-0.91237	-0.00051897	-0.38284	-0.00021777	568.8188878854178	45.869	0.89963	45.869	45.558	46.458	0					63	32	3	0	0	0	0.00051734	2	10268	10268;10320		128.93	53.172	1	1505800			18244	5787	10307	10308	23121;23122	23121					0.06133683677512636
KIDDTIRYL	9	Unmodified	_KIDDTIRYL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8190307617188	2	568.819138	1135.62372	0.45488	0.00025874	-0.32593	-0.00018539	0.12895	7.335E-05	568.8189415709414	45.614	0.70975	45.674	45.389	46.098	0.059834					50	24	3	0	0	0	0.00024732	2	10251	10197;10251		132.38	53.172	1	1338800			18245	5787	10307	10308	23123;23124	23124					0.06133683677512636
KIDDTIRYL	9	Unmodified	_KIDDTIRYL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.8193359375	2	568.819138	1135.62372	0.43125	0.0002453	-0.15832	-9.0054E-05	0.27293	0.00015525	568.8190104294683	45.619	0.7367	45.684	45.384	46.121	0.065048					52	26	3	0	0	0	6.549E-06	2	10183	10183;10231		155.95	76.357	1	1485100			18246	5787	10307	10308	23125;23126	23125					0.06133683677512636
KIDNLIFDEI	10	Unmodified	_KIDNLIFDEI_					0	0	0			REV__ENST00000251636.9_1_5:54569197-54570466:-|nuORF	REV__ENST00000251636.9_1_5:54569197-54570466:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2237854003906	3	407.223811	1218.6496	-0.36715	-0.00014951	0.52337	0.00021313	0.15622	6.3615E-05	407.2238780778802	13.898	0.26134	13.832	13.716	13.977	-0.066068					19	8	3	0	0	0	0.35961	1	574	574		10.899	0.58372	1	123890	+		18247	19528	10308	10309	23127	23127					0.04902533129143194
KIEGLTLTV	9	Unmodified	_KIEGLTLTV_					0	0	0		nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.29998779296875	2	487.30005	972.585547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.762	1	81.831	81.331	82.331	0.068993								0	0	0	0.2362	1	21303	21303		10.824	0	1				18248	5935	10309	10310	23128	23128					0.09815797762837519
KIEHELSRC	9	Unmodified	_KIEHELSRC_					0	0	0		ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2714233398438	2	557.787315	1113.56008	0.32786	0.00018288	-0.34063	-0.00019	-0.012764	-7.1198E-06	557.7870721778429	23.76	0.51514	23.721	23.45	23.965	-0.038927					32	17	2	0	0	0	0.26204	1	3464	3464		1.4819	0.41044	1	41623			18249	6596	10310	10311	23129	23129					0.007839999687575983
KIELAHLVL	9	Unmodified	_KIELAHLVL_					0	0	0			REV__ENSG00000244219|ENST00000431679|TMEM225B	REV__ENSG00000244219|ENST00000431679|TMEM225B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3176879882812	2	518.331685	1034.64882	0.54863	0.00028437	-0.44059	-0.00022837	0.10804	5.6E-05	518.3312231690392	77.305	0.33743	77.36	77.233	77.571	0.055412					24	11	3	0	0	0	0.23007	1	19914	19914		19.257	1.1106	1	220270	+		18250	19200	10311	10312	23130	23130					0.13287783270743603
KIELAHLVL	9	Unmodified	_KIELAHLVL_					0	0	0			REV__ENSG00000244219|ENST00000431679|TMEM225B	REV__ENSG00000244219|ENST00000431679|TMEM225B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.31787109375	2	518.331685	1034.64882	0.68385	0.00035446	-1.2122	-0.0006283	-0.52831	-0.00027384	518.3310065298957	77.387	0.27927	77.355	77.262	77.542	-0.031334					14	9	3	0	0	0	0.23007	1	19970	19970		19.257	1.1106	1	160230	+		18251	19200	10311	10312	23131	23131					0.13287783270743603
KIEPNKKDLD	10	Unmodified	_KIEPNKKDLD_					0	0	0			REV__ENSG00000099250|ENST00000374867|NRP1	REV__ENSG00000099250|ENST00000374867|NRP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3238525390625	2	600.335153	1198.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.81	1	105.81	105.31	106.31	0								0	0	0	0.37157	1	28002	28002		5.7319	0	1		+		18252	14125	10312	10313	23132	23132					0.0643705136067183
KIEPNKKDLD	10	Unmodified	_KIEPNKKDLD_					0	0	0			REV__ENSG00000099250|ENST00000374867|NRP1	REV__ENSG00000099250|ENST00000374867|NRP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3238525390625	2	600.335153	1198.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106	1	106	105.5	106.5	0.0031738								0	0	0	0.3629	1	28082	28082		9.3831	0	1		+		18253	14125	10312	10313	23133	23133					0.0643705136067183
KIEQPVELKSL	11	Unmodified	_KIEQPVELKSL_					0	0	0			REV__ENSG00000177000|ENST00000376590|MTHFR	REV__ENSG00000177000|ENST00000376590|MTHFR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.3848266601562	2	642.382103	1282.74965	0.20182	0.00012964	3.7415	0.0024034	3.9433	0.0025331	642.3843616966557	94.998	0.12126	94.998	94.914	95.035	0					15	10	2	0	0	0	0.47825	1	25363	25363		0.96228	0.43751	1	51900	+		18254	17966	10313	10314	23134	23134					0.11958770462933899
KIEQSELQPK	10	Unmodified	_KIEQSELQPK_					0	0	0		ENST00000320027.9_1_13:31729697-31735637:-|nuORF;ENST00000445273.6_1_13:31729697-31736149:-|nuORF	ENST00000320027.9_1_13:31729697-31735637:-|nuORF	ENST00000320027.9_1_13:31729697-31735637:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3236083984375	2	600.335153	1198.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.75	1	105.76	105.26	106.26	0.0031738								0	0	0	0.37157	1	28031	28031		5.7319	0.50118	1				18255	9374	10314	10315	23135	23135					0.06437051360649093
KIEVLHREKAS	11	Unmodified	_KIEVLHREKAS_					0	0	0			REV__nc|ENSG00000111907|Q16890-4|TPD52L1	REV__nc|ENSG00000111907|Q16890-4|TPD52L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.257568359375	3	437.257738	1308.75138	0.18915	8.2706E-05	-0.69799	-0.0003052	-0.50884	-0.00022249	437.25759430524806	91.762	1.3153	91.763	91.42	92.735	0.00046539					178	87	3	0	0	0	0.46971	1	24377	24377		2.084	0	1	686300	+		18256	14745	10315	10316	23136	23136					0.10935824271541605
KIEVLHREKAS	11	Unmodified	_KIEVLHREKAS_					0	0	0			REV__nc|ENSG00000111907|Q16890-4|TPD52L1	REV__nc|ENSG00000111907|Q16890-4|TPD52L1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	437.257738	1308.75138	0.034221	1.4963E-05	-0.62662	-0.00027399	-0.5924	-0.00025903	437.2575575618153	91.852	0.85625	91.943	91.57	92.426	0.090668	0.068755	3.2489E-05	NaN	2.084	105	57	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573180	+		18257	14745	10315	10316							0.10935824271541605
KIFDSFAKL	9	Unmodified	_KIFDSFAKL_					0	0	0		ENST00000494490.1_3_15:57999305-58006874:+|nuORF;nc|ENSG00000255529|P0CAP2-3|POLR2M;ENSG00000255529|ENST00000299638|POLR2M	ENST00000494490.1_3_15:57999305-58006874:+|nuORF	ENST00000494490.1_3_15:57999305-58006874:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.2933349609375	2	534.808042	1067.60153	0.30566	0.00016347	3.0559	0.0016343	3.3615	0.0017978	534.8104111472678	32.899	2.6839	32.955	32.478	35.162	0.055309					272	96	6	0	0	0	0.24247	1	6706	6706		17.443	1.2935	1	30316000			18258	8618	10316	10317	23137	23137					0.07043503999739187
KIFFTKVYFV	10	Unmodified	_KIFFTKVYFV_					0	0	0		ENST00000409843.5_1_2:189459510-189459687:+|nuORF	ENST00000409843.5_1_2:189459510-189459687:+|nuORF	ENST00000409843.5_1_2:189459510-189459687:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.2273864746094	3	431.253154	1290.73763	-0.32288	-0.00013924	-4.0186	-0.001733	-4.3415	-0.0018723	431.2512690943182	23.007	0.20325	23.007	22.969	23.173	0					9	6	2	0	0	0	0.3213	1	3318	3318		1.9064	1.2795	1	48840			18259	10258	10317	10318	23138	23138					0.10389198510415554
KIFFYFWMYFK	11	Unmodified	_KIFFYFWMYFK_					0	0	0			REV__ENST00000498257.5_1_6:129811877-129812174:+|nuORF	REV__ENST00000498257.5_1_6:129811877-129812174:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.23858642578125	4	405.708443	1618.80467	0.027793	1.1276E-05	-0.83193	-0.00033752	-0.80413	-0.00032624	405.95888676826064	20.682	0.42822	20.682	20.514	20.942	0					24	14	2	0	0	0	0.33334	1	2671	2671		1.2148	0.76031	1	73358	+		18260	21695	10318	10319	23139	23139					0.020014857298292554
KIFFYFWMYFK	11	Unmodified	_KIFFYFWMYFK_					0	0	0			REV__ENST00000498257.5_1_6:129811877-129812174:+|nuORF	REV__ENST00000498257.5_1_6:129811877-129812174:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.238525390625	4	405.708443	1618.80467	0.19696	7.9908E-05	-1.4138	-0.00057361	-1.2169	-0.0004937	405.95860922685506	20.946	0.54181	20.836	20.637	21.178	-0.11003					28	18	2	0	0	0	0.33303	1	2735	2735		2.4348	1.9803	1	109440	+		18261	21695	10318	10319	23140	23140					0.020014857298292554
KIFFYFWMYFK	11	Unmodified	_KIFFYFWMYFK_					0	0	0			REV__ENST00000498257.5_1_6:129811877-129812174:+|nuORF	REV__ENST00000498257.5_1_6:129811877-129812174:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2385559082031	4	405.708443	1618.80467	0.14904	6.0465E-05	-1.3996	-0.00056781	-1.2505	-0.00050734	405.70789587500167	20.807	0.58974	20.754	20.472	21.062	-0.052912					46	20	3	0	0	0	0.33303	1	2697	2697		2.4348	0.8425	1	106450	+		18262	21695	10318	10319	23141	23141					0.020014857298292554
KIFKICLV	8	Unmodified	_KIFKICLV_					0	0	0		ENSG00000138780|ENST00000515279|GSTCD;nc|ENSG00000138780|Q8NEC7-3|GSTCD;ENST00000484843.1_1_4:106638770-106744253:+|nuORF	ENSG00000138780|ENST00000515279|GSTCD	ENSG00000138780|ENST00000515279|GSTCD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.3065490722656	2	482.306624	962.598695	0.45818	0.00022098	-0.41172	-0.00019857	0.046464	2.241E-05	482.3062826090438	78.92	0.94907	78.92	78.462	79.411	0					85	38	3	0	0	0	0.34434	1	20383	20383		0.79363	0	1	341710			18263	4196	10319	10320	23142	23142					0.11589957341232093
KIFMEEVPGG	10	Unmodified	_KIFMEEVPGG_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.7816772460938	2	553.781167	1105.54778	0.26698	0.00014785	0.25689	0.00014226	0.52387	0.00029011	553.7813124678244	26.887	0.65145	26.887	26.586	27.237	0					53	22	3	0	0	0	0.27059	1	4461	4461		24.021	1.2843	1	446090			18264	4462	10320	10321	23143	23143					-0.000770364942809465
KIFMEEVPGG	10	Unmodified	_KIFMEEVPGG_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.781494140625	2	553.781167	1105.54778	0.28215	0.00015625	0.061567	3.4095E-05	0.34372	0.00019035	553.781210726404	26.878	1.1015	26.856	26.592	27.693	-0.021412					69	38	4	0	0	0	0.27059	1	4471	4471		24.021	1.2843	1	537290			18265	4462	10320	10321	23144	23144					-0.000770364942809465
KIFMEEVPGG	10	Unmodified	_KIFMEEVPGG_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.7817993164062	2	553.781167	1105.54778	0.35929	0.00019897	0.22267	0.00012331	0.58195	0.00032227	553.7813149348239	26.93	0.69332	26.918	26.651	27.344	-0.01156					54	24	3	0	0	0	0.27059	1	4471	4471		24.021	1.2843	1	530200			18266	4462	10320	10321	23145	23145					-0.000770364942809465
KIFRDRFLYTF	11	Unmodified	_KIFRDRFLYTF_					0	0	0		nc|ENSG00000160505|Q96MN2-2|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4;ENSG00000160505|ENST00000301295|NLRP4	nc|ENSG00000160505|Q96MN2-2|NLRP4	nc|ENSG00000160505|Q96MN2-2|NLRP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.28033447265625	3	502.613633	1504.81907	0.50562	0.00025413	-0.43252	-0.00021739	0.073102	3.6742E-05	502.61353270113534	36.987	1.5501	37.08	36.74	38.29	0.093018					89	56	2	0	0	0	0.33263	1	7599	7599		3.8459	2.6311	1	708000			18267	5467	10321	10322	23146	23146					0.08685274202343862
KIFSGLLKV	9	Unmodified	_KIFSGLLKV_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;ENST00000481626.5_1_3:52553496-52554202:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.8287658691406	2	502.828778	1003.643	0.41362	0.00020798	0.15737	7.9129E-05	0.57098	0.00028711	502.828766025352	51.579	1.921	51.579	50.433	52.354	0					176	70	4	0	0	0	0.0013924	2	12056	12056;12110		117.76	48.656	1	3796600			18268	423	10322	10323	23147;23148	23147					0.14132684759090353
KIFSGLLKV	9	Unmodified	_KIFSGLLKV_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;ENST00000481626.5_1_3:52553496-52554202:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.8288879394531	2	502.828778	1003.643	0.33857	0.00017024	0.28036	0.00014097	0.61892	0.00031121	502.8288175607578	51.584	1.6965	51.631	50.741	52.437	0.046577					152	62	4	0	0	0	0.0013924	2	12038	12038;12085		117.76	48.656	1	4101000			18269	423	10322	10323	23149;23150	23149					0.14132684759090353
KIFSGLLKV	9	Unmodified	_KIFSGLLKV_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;ENST00000481626.5_1_3:52553496-52554202:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.8292541503906	2	502.828778	1003.643	0.28316	0.00014238	0.34564	0.0001738	0.62879	0.00031618	502.82884370391037	51.738	2.0794	51.747	50.426	52.506	0.0095634					162	77	3	0	0	0	0.0023895	2	12061	12061;12112		107.1	47.026	1	3839000			18270	423	10322	10323	23151;23152	23151					0.14132684759090353
KIFSGVFVK	9	Unmodified	_KIFSGVFVK_					0	0	0		ENST00000530523.1_1_8:42580956-42581139:-|nuORF;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;ENST00000462348.1_1_6:42848614-42854030:+|nuORF;ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1	ENST00000530523.1_1_8:42580956-42581139:-|nuORF	ENST00000530523.1_1_8:42580956-42581139:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.8132934570312	2	512.813128	1023.6117	0.082346	4.2228E-05	0.97977	0.00050244	1.0621	0.00054466	512.8132626620519	42.548	1.2174	42.548	42.277	43.494	0					124	44	6	0	0	0	0.00024732	3	9292	9248;9292;9344		132.38	90.285	1	5169900			18271	4700	10323	10324	23153;23154;23155	23154					0.10084111724995637
KIFSGVFVK	9	Unmodified	_KIFSGVFVK_					0	0	0		ENST00000530523.1_1_8:42580956-42581139:-|nuORF;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;ENST00000462348.1_1_6:42848614-42854030:+|nuORF;ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1	ENST00000530523.1_1_8:42580956-42581139:-|nuORF	ENST00000530523.1_1_8:42580956-42581139:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.8133544921875	2	512.813128	1023.6117	0.20703	0.00010617	0.77342	0.00039662	0.98046	0.00050279	512.8131723295935	42.376	1.1778	42.461	42.121	43.299	0.085201					122	42	5	0	0	0	6.0404E-05	2	9230	9188;9230		147.24	105.15	1	5696500			18272	4700	10323	10324	23156;23157	23157					0.10084111724995637
KIFSGVFVK	9	Unmodified	_KIFSGVFVK_					0	0	0		ENST00000530523.1_1_8:42580956-42581139:-|nuORF;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;ENST00000462348.1_1_6:42848614-42854030:+|nuORF;ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1	ENST00000530523.1_1_8:42580956-42581139:-|nuORF	ENST00000530523.1_1_8:42580956-42581139:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.8132934570312	2	512.813128	1023.6117	0.22837	0.00011711	0.81988	0.00042044	1.0482	0.00053756	512.8131707730026	42.268	1.4919	42.359	42.037	43.529	0.091362					134	53	5	0	0	0	0.00024732	2	9205	9164;9205		132.38	90.285	1	5205400			18273	4700	10323	10324	23158;23159	23159					0.10084111724995637
KIFSIVDDP	9	Unmodified	_KIFSIVDDP_					0	0	0			REV__ENSG00000153993|ENST00000284136|SEMA3D	REV__ENSG00000153993|ENST00000284136|SEMA3D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3180541992188	2	517.281857	1032.54916	0.37869	0.00019589	-0.48163	-0.00024914	-0.10294	-5.3251E-05	517.2816632225272	62.57	0.7359	62.667	62.307	63.043	0.096985					41	26	3	0	0	0	0.20651	1	15509	15509		14.838	0	1	278160	+		18274	16643	10324	10325	23160	23160					0.034189208661246084
KIFSRLIYIA	10	Unmodified	_KIFSRLIYIA_					0	0	0		ENSG00000144481|ENST00000324695|TRPM8;nc|ENSG00000144481|Q7Z2W7-3|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.5885009765625	3	408.588536	1222.74378	0.013623	5.5661E-06	0.53346	0.00021797	0.54709	0.00022353	408.58869676961933	38.741	0.65763	38.833	38.543	39.2	0.091572					53	23	3	0	0	0	0.4022	2	8125	8125;8142		3.0723	0.22898	1	499680			18275	4590	10325	10326	23161;23162	23161					0.14131716741962919
KIFSRLIYIA	10	Unmodified	_KIFSRLIYIA_					0	0	0		ENSG00000144481|ENST00000324695|TRPM8;nc|ENSG00000144481|Q7Z2W7-3|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.5886535644531	3	408.588536	1222.74378	0.16507	6.7445E-05	0.52662	0.00021517	0.69169	0.00028261	408.58867229836676	39.09	1.1926	39.189	38.544	39.736	0.099407					94	42	3	0	0	0	0.4022	1	8147	8147		3.0723	0.22898	1	550090			18276	4590	10325	10326	23163	23163					0.14131716741962919
KIFWYTSF	8	Unmodified	_KIFWYTSF_					0	0	0		ENST00000534658.5_1_6:134494506-134495951:-|nuORF	ENST00000534658.5_1_6:134494506-134495951:-|nuORF	ENST00000534658.5_1_6:134494506-134495951:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.2677001953125	2	546.28166	1090.54877	0.48083	0.00026267	-0.04461	-2.4369E-05	0.43622	0.0002383	546.2815875825869	31.815	1.6692	31.815	31.45	33.119	0					116	59	3	0	0	0	0.42446	1	6139	6139		14.582	1.0738	1	2526300			18277	11663	10326	10327	23164	23164					0.007115459369288146
KIGEVSSPK	9	Unmodified	_KIGEVSSPK_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.77435302734375	2	472.7742	943.533846	-0.048224	-2.2799E-05	0.38116	0.0001802	0.33294	0.0001574	472.77421786676985	16.222	0.70545	16.222	15.816	16.521	0					65	24	4	0	0	0	0.30824	1	1292	1292		7.609	1.4032	1	218590			18278	576	10327	10328	23165	23165					0.05982054068954312
KIGEVSSPK	9	Unmodified	_KIGEVSSPK_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7741394042969	2	472.7742	943.533846	0.1297	6.132E-05	0.38298	0.00018106	0.51268	0.00024238	472.7742117487552	16.258	0.71867	16.196	15.808	16.526	-0.062534					56	24	4	0	0	0	0.29124	1	1318	1318		10.151	3.9448	1	267720			18279	576	10327	10328	23166	23166					0.05982054068954312
KIGEVSSPK	9	Unmodified	_KIGEVSSPK_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	472.7742	943.533846	-0.0060867	-2.8776E-06	0.40639	0.00019213	0.40031	0.00018925	472.77421661719205	16.336	0.66559	16.222	15.838	16.503	-0.11434	0.0087544	1.5973E-05	NaN	10.151	58	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238480			18280	576	10327	10328							0.05982054068954312
KIGGIFAFK	9	Unmodified	_KIGGIFAFK_					0	0	0		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2;nc|ENSG00000116171|P22307-4|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.8005065917969	2	490.80002	979.585488	0.61918	0.00030389	0.72757	0.00035709	1.3468	0.00066099	490.7999635286913	47.329	0.75302	47.329	46.961	47.714	0					59	26	3	0	0	0	0.10059	1	10754	10754		38.176	15.439	1	742370			18281	2710	10328	10329	23167	23167					0.09487842553505743
KIGGIFAFK	9	Unmodified	_KIGGIFAFK_					0	0	0		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2;nc|ENSG00000116171|P22307-4|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.3020324707031	2	490.80002	979.585488	0.32508	0.00015955	0.62805	0.00030825	0.95313	0.0004678	490.799992638008	47.171	0.74518	47.223	46.955	47.7	0.052574					61	27	3	0	0	0	0.066761	1	10689	10689		56.177	18.203	1	548940			18282	2710	10328	10329	23168	23168					0.09487842553505743
KIGGIFAFK	9	Unmodified	_KIGGIFAFK_					0	0	0		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;nc|ENSG00000116171|P22307-6|SCP2;nc|ENSG00000116171|P22307-2|SCP2;nc|ENSG00000116171|P22307-4|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.8002624511719	2	490.80002	979.585488	0.94816	0.00046535	-0.11912	-5.8463E-05	0.82904	0.00040689	490.79967419500355	47.289	0.66457	47.344	47.037	47.702	0.054371					55	24	3	0	0	0	0.063853	1	10724	10724		47.749	17.112	1	683810			18283	2710	10328	10329	23169	23169					0.09487842553505743
KIHIKTSPDQ	10	Unmodified	_KIHIKTSPDQ_					0	0	0			REV__ENSG00000255837|ENST00000538986|TAS2R20	REV__ENSG00000255837|ENST00000538986|TAS2R20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3773803710938	2	583.830037	1165.64552	0.33201	0.00019384	-0.52169	-0.00030458	-0.18968	-0.00011074	583.8296826455165	38.22	0.40961	38.311	38.101	38.511	0.090881					19	14	2	0	0	0	0.31986	1	7896	7896		4.897	0.95262	1	121760	+		18284	19247	10329	10330	23170	23170					0.06932488426082273
KIHKIMVFVP	10	Unmodified	_KIHKIMVFVP_					0	0	0		ENST00000507606.2_1_7:135359502-135359658:+|nuORF	ENST00000507606.2_1_7:135359502-135359658:+|nuORF	ENST00000507606.2_1_7:135359502-135359658:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8721923828125	2	606.370287	1210.72602	0.060157	3.6478E-05	0.59621	0.00036153	0.65637	0.000398	606.3705142520195	112.79	0.17229	112.79	112.72	112.89	0					31	20	2	0	0	0	0.41815	1	29303	29303		0.40072	0	1	43249			18285	11337	10330	10331	23171	23171					0.12908678215444525
KIHLVFEFI	9	Unmodified	_KIHLVFEFI_					0	0	0		nc|ENSG00000273345|Q8IVW4-2|CDKL3;ENSG00000006837|ENST00000265334|CDKL3	nc|ENSG00000273345|Q8IVW4-2|CDKL3	nc|ENSG00000273345|Q8IVW4-2|CDKL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.3394165039062	2	573.33951	1144.66447	0.23579	0.00013518	-0.42099	-0.00024137	-0.18521	-0.00010619	573.3392295234768	91.138	0.36865	91.138	91.029	91.397	0					41	26	2	0	0	0	0.34536	1	24229	24229		2.0598	0.21551	1	308810			18286	371	10331	10332	23172	23172					0.09792069787795299
KIIKLCMWISI	11	Unmodified	_KIIKLCMWISI_					0	0	0			REV__STOML3|p.L106Sfs*6|1|0.14|ENSG00000133115|chr13:38970385-38970385|G/-|frameshift_variant	REV__STOML3|p.L106Sfs*6|1|0.14|ENSG00000133115|chr13:38970385-38970385|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.22662353515625	3	449.93455	1346.78182	-0.036231	-1.6301E-05	-0.95237	-0.00042851	-0.9886	-0.00044481	449.9335184416785	15.66	0.14589	15.55	15.464	15.61	-0.10981					6	4	2	0	0	0	0.3333	1	1104	1104		1.3296	0	1	10777	+		18287	15608	10332	10333	23173	23173					0.12230143340752875
KIIKMFPF	8	Unmodified	_KIIKMFPF_					0	0	0			REV__ENST00000473136.4_2_3:88108451-88184391:+|nuORF	REV__ENST00000473136.4_2_3:88108451-88184391:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2894287109375	2	512.306624	1022.59869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.806	1	73.775	73.275	74.275	-0.030655								0	0	0	0.35985	1	18867	18867		10.183	0.10947	1		+		18288	17874	10333	10334	23174	23174					0.08829957341254158
KIILSFSPNLS	11	Unmodified	_KIILSFSPNLS_					0	0	0			REV__nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5	REV__nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.8787536621094	3	406.907934	1217.70197	-0.40122	-0.00016326	3.3514	0.0013637	2.9502	0.0012004	406.9094635262476	14.024	0.17513	13.92	13.816	13.991	-0.10466					10	5	2	0	0	0	0.33189	1	581	581		5.8681	1.6786	1	13035	+		18289	19338	10334	10335	23175	23175					0.1018311626276045
KIILSFSPNLS	11	Unmodified	_KIILSFSPNLS_					0	0	0			REV__nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5	REV__nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	406.907934	1217.70197	-0.39689	-0.0001615	5.7268	0.0023303	5.3299	0.0021688	407.24428029540456	13.617	0.13285	13.549	13.468	13.6	-0.067495	-0.18518	0.0025466	NaN	5.8681	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8074	+		18290	19338	10334	10335							0.1018311626276045
KIILSKISV	9	Unmodified	_KIILSKISV_					0	0	0		ENST00000451388.1_1_7:65686613-65705388:+|nuORF;ENST00000442120.1_1_7:65670868-65705388:+|nuORF;ENST00000304842.5_1_7:65670295-65705388:+|nuORF	ENST00000451388.1_1_7:65686613-65705388:+|nuORF	ENST00000451388.1_1_7:65686613-65705388:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8187561035156	2	500.841885	999.669217	0.29868	0.00014959	-1.3584	-0.00068036	-1.0597	-0.00053077	500.84115441371904	42.87	0.35499	42.956	42.78	43.135	0.085201					16	12	2	0	0	0	0.1645	1	9359	9359		33.445	9.6551	1	372820			18291	9261	10335	10336	23176	23176					0.169369539305535
KIKAMISDF	9	Unmodified	_KIKAMISDF_					0	0	0		ERN1|p.I849*|1|0.28|ENSG00000178607|chr17:64045467-64045467|T/-|frameshift_variant;ENSG00000178607|ENST00000433197|ERN1	ERN1|p.I849*|1|0.28|ENSG00000178607|chr17:64045467-64045467|T/-|frameshift_variant	ERN1|p.I849*|1|0.28|ENSG00000178607|chr17:64045467-64045467|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.345703125	2	526.794078	1051.5736	0.22437	0.00011819	2.4615	0.0012967	2.6859	0.0014149	526.795446693115	27.429	0.4291	27.407	27.158	27.587	-0.021412					20	14	2	0	0	0	0.25988	1	4701	4701		3.9444	1.6417	1	63644			18292	7065	10336	10337	23177	23177					0.049878577480058084
KIKDARRGPLV	11	Unmodified	_KIKDARRGPLV_					0	0	0		ENST00000413684.1_1_2:91935968-91936997:-|nuORF	ENST00000413684.1_1_2:91935968-91936997:-|nuORF	ENST00000413684.1_1_2:91935968-91936997:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.9204406738281	3	418.266456	1251.77754	-0.041488	-1.7353E-05	-0.16356	-6.8413E-05	-0.20505	-8.5766E-05	418.26634345863334	40.789	0.73453	40.888	40.666	41.4	0.099407					66	26	3	0	0	0	0.33263	1	8657	8657		3.8459	0.52627	1	1298600			18293	10292	10337	10338	23178	23178					0.16172138233696387
KIKEDQFR	8	Unmodified	_KIKEDQFR_					0	0	0			REV__SLC16A10|p.N327Ifs*30|1|0.21|ENSG00000112394|chr6:111206623-111206623|A/-|frameshift_variant	REV__SLC16A10|p.N327Ifs*30|1|0.21|ENSG00000112394|chr6:111206623-111206623|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3001708984375	2	532.298373	1062.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.482	1	12.414	11.914	12.914	-0.06806								0	0	0	0.36623	1	139	139		7.2892	0.56607	1		+		18294	23305	10338	10339	23179	23179					0.053405477088290354
KIKEEQNRVVR	11	Unmodified	_KIKEEQNRVVR_					0	0	0			REV__nc|ENSG00000163075|Q4G0U5-3|CFAP221	REV__nc|ENSG00000163075|Q4G0U5-3|CFAP221	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7558898925781	3	466.944042	1397.8103	-0.16994	-7.9354E-05	-0.51588	-0.00024089	-0.68582	-0.00032024	466.9439235837575	22.558	0.37264	22.558	22.39	22.763	0					19	12	2	0	0	0	0.3333	1	3232	3232		0.45452	0.046251	1	67573	+		18295	17033	10339	10340	23180	23180					0.12730300565863217
KIKGRQQKD	9	Unmodified	_KIKGRQQKD_					0	0	0			REV__ENSG00000129007|ENST00000467889|CALML4	REV__ENSG00000129007|ENST00000467889|CALML4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2530517578125	2	550.830372	1099.64619	0.15102	8.3186E-05	-0.37657	-0.00020743	-0.22555	-0.00012424	550.8303037660402	14.588	0.17289	14.483	14.368	14.54	-0.10466					8	5	2	0	0	0	0.26031	1	763	763		3.5965	0	1	24660	+		18296	15397	10340	10341	23181	23181					0.10035327865784893
KIKKRYEEK	9	Unmodified	_KIKKRYEEK_					0	0	0			REV__ENSG00000178105|ENST00000322536|DDX10	REV__ENSG00000178105|ENST00000322536|DDX10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.54522705078125	3	407.915312	1220.72411	-0.17956	-7.3243E-05	1.7207	0.00070191	1.5412	0.00062866	407.9156117258147	17.841	0.79533	17.724	17.355	18.151	-0.11739					74	27	5	0	0	0	0.26127	1	1649	1649		2.7352	0.23671	1	75275	+		18297	18017	10341	10342	23182	23182					0.12257340731139266
KIKLPLGHF	9	Unmodified	_KIKLPLGHF_					0	0	0			REV__nc|ENSG00000006468|P50549-4|ETV1	REV__nc|ENSG00000006468|P50549-4|ETV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2660522460938	2	526.834394	1051.65424	0.40517	0.00021346	0.030933	1.6296E-05	0.4361	0.00022975	526.8343121159567	41.557	0.34399	41.557	41.252	41.596	0					19	12	2	0	0	0	0.2451	1	8963	8963		10.824	3.5347	1	1144700	+		18298	13361	10342	10343	23183	23183					0.1304750685324052
KIKMRKQYKKK	11	Unmodified	_KIKMRKQYKKK_					0	0	0			REV__ENSG00000124383|ENST00000244230|MPHOSPH10	REV__ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.284423828125	3	493.649913	1477.92791	0.32597	0.00016091	-0.18058	-8.9145E-05	0.14538	7.1769E-05	493.64977323077875	39.573	1.0236	39.665	39.027	40.051	0.09267					112	36	4	0	0	0	0.33352	1	8365	8365		0	0	1	676970	+		18299	15232	10343	10344	23184	23184					0.2080616190096407
KIKMRKQYKKK	11	Unmodified	_KIKMRKQYKKK_					0	0	0			REV__ENSG00000124383|ENST00000244230|MPHOSPH10	REV__ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2843933105469	3	493.649913	1477.92791	0.3712	0.00018324	-0.31682	-0.0001564	0.054384	2.6847E-05	493.6496974006133	39.563	0.96354	39.663	39.046	40.01	0.099407					97	34	3	0	0	0	0.33352	1	8351	8351		0.073264	0.073264	1	1095900	+		18300	15232	10343	10344	23185	23185					0.2080616190096407
KIKMRKQYKKK	11	Unmodified	_KIKMRKQYKKK_					0	0	0			REV__ENSG00000124383|ENST00000244230|MPHOSPH10	REV__ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	493.649913	1477.92791	0.11972	5.9099E-05	-0.11201	-5.5293E-05	0.0077107	3.8064E-06	493.64987525848017	39.721	1.1539	39.721	39.073	40.226	0	0.038335	0.00010722	NaN	0	102	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	583730	+		18301	15232	10343	10344							0.2080616190096407
KIKRMARFKWR	11	Unmodified	_KIKRMARFKWR_					0	0	0			REV__ENST00000530606.1_1_10:77055306-77055468:+|nuORF	REV__ENST00000530606.1_1_10:77055306-77055468:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.3099670410156	3	507.310002	1518.90818	0.20652	0.00010477	-0.16116	-8.1757E-05	0.045367	2.3015E-05	507.3097968971451	94.704	0.93582	94.787	94.107	95.043	0.082779					316	76	5	0	0	0	0.47633	2	25312	25274;25312		1.2148	1.2148	1	3501800	+		18302	22009	10344	10345	23186;23187	23187					0.1694783068085144
KILFIRMLHN	10	Unmodified	_KILFIRMLHN_					0	0	0		ENSG00000148935|ENST00000454584|GAS2	ENSG00000148935|ENST00000454584|GAS2	ENSG00000148935|ENST00000454584|GAS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.8858642578125	2	642.884093	1283.75363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.876	1	91.876	91.376	92.376	0								0	0	0	0.38126	1	24413	24413		1.6526	0	1				18303	4836	10345	10346	23188	23188					0.12310581475685467
KILFIRMLHN	10	Unmodified	_KILFIRMLHN_					0	0	0		ENSG00000148935|ENST00000454584|GAS2	ENSG00000148935|ENST00000454584|GAS2	ENSG00000148935|ENST00000454584|GAS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.8858642578125	2	642.884093	1283.75363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.004	1	92.004	91.504	92.504	0.00046539								0	0	0	0.37664	1	24446	24446		3.5965	0	1				18304	4836	10345	10346	23189	23189					0.12310581475685467
KILGQIELVQQ	11	Unmodified	_KILGQIELVQQ_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3782348632812	2	634.88227	1267.74999	-0.066645	-4.2312E-05	-4.2337	-0.0026879	-4.3003	-0.0027302	634.8783484313315	102.9	0.057602	102.9	102.87	102.93	0					11	7	2	0	0	0	0.33149	1	27355	27355		5.2969	2.3016	1	84137			18305	2585	10346	10347	23190	23190					0.12682190182772501
KILIDKVK	8	Unmodified	_KILIDKVK_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.Y1107Ifs*12|1|0.29|ENSG00000175054|chr3:142547763-142547763|A/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2901611328125	2	478.828778	955.643003	0.41121	0.0001969	-0.57124	-0.00027353	-0.16003	-7.6626E-05	478.82854082296126	45.533	0.34568	45.598	45.436	45.782	0.065048					25	12	3	0	0	0	0.33293	1	10187	10187		14.838	0	1	231220			18306	6835	10347	10348	23191	23191					0.16340684759086344
KILLNFFCPGF	11	Unmodified	_KILLNFFCPGF_					0	0	0			REV__ENSG00000268964|ENST00000601417|ERVV-2	REV__ENSG00000268964|ENST00000601417|ERVV-2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.697998046875	3	433.570377	1297.6893	0.018071	7.8349E-06	2.1862	0.00094787	2.2043	0.00095571	433.571560831281	35.933	0.70921	35.933	35.547	36.256	0					41	25	2	0	0	0	0.33122	1	7183	7183		7.0371	0.84524	1	272740	+		18307	19306	10348	10349	23192	23192					0.05236381598842854
KILPKTLGPI	10	Unmodified	_KILPKTLGPI_					0	0	0		TFDP2|p.P356Lfs*4|1|0.28|ENSG00000114126|chr3:141953001-141953001|G/-|frameshift_variant;ENSG00000114126|ENST00000489671|TFDP2	TFDP2|p.P356Lfs*4|1|0.28|ENSG00000114126|chr3:141953001-141953001|G/-|frameshift_variant	TFDP2|p.P356Lfs*4|1|0.28|ENSG00000114126|chr3:141953001-141953001|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3632202148438	2	540.362985	1078.71142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.624	1	38.715	38.215	39.215	0.090881								0	0	0	0.37157	1	8070	8070		5.7319	0	1				18308	2547	10349	10350	23193	23193					0.17520929338934366
KILRSTFSLGQ	11	Unmodified	_KILRSTFSLGQ_					0	0	0		ASTN2|p.G1095Wfs*12|1|0.13|ENSG00000148219|chr9:116618396-116618397|-/A|frameshift_variant;nc|ENSG00000148219|O75129-2|ASTN2;ENSG00000148219|ENST00000313400|ASTN2	ASTN2|p.G1095Wfs*12|1|0.13|ENSG00000148219|chr9:116618396-116618397|-/A|frameshift_variant	ASTN2|p.G1095Wfs*12|1|0.13|ENSG00000148219|chr9:116618396-116618397|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.3655395507812	2	625.366787	1248.71902	0.16093	0.00010064	-0.47297	-0.00029578	-0.31204	-0.00019514	625.3663374710434	98.302	0.41965	98.295	98.075	98.494	-0.0068283					110	47	3	0	0	0	0.46842	1	26342	26342		4.897	1.3005	1	697460			18309	59	10350	10351	23194	23194					0.10461036868559859
KIMKDILEKK	10	Oxidation (M)	_KIM(Oxidation (M))KDILEKK_		KIM(1)KDILEKK		KIM(78)KDILEKK	0	0	1		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	nc|ENSG00000080824|P07900-2|HSP90AA1	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2564392089844	3	421.256458	1260.74754	-0.20997	-8.8452E-05	0.12238	5.1553E-05	-0.087594	-3.6899E-05	421.25658982899665	16.109	0.89629	16.109	15.763	16.659	0					105	31	5	0	0	0	0.014368	2	1219	1219;1266		77.867	46.406	1	1145300			18310	12596	10351	10352	23195;23196	23195		967			0.12760018453468547
KIMKDILEKK	10	Oxidation (M)	_KIM(Oxidation (M))KDILEKK_		KIM(1)KDILEKK		KIM(88)KDILEKK	0	0	1		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	nc|ENSG00000080824|P07900-2|HSP90AA1	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.25653076171875	3	421.256458	1260.74754	-0.065228	-2.7478E-05	0.085854	3.6167E-05	0.020626	8.689E-06	421.25655832379107	16.13	0.83631	16.067	15.781	16.617	-0.062532					97	28	5	0	0	0	0.0056481	2	1238	1238;1281		87.878	50.627	1	1251800			18311	12596	10351	10352	23197;23198	23197		967			0.12760018453468547
KIMVYKIFR	9	Unmodified	_KIMVYKIFR_					0	0	0		ENSG00000130772|ENST00000373842|MED18	ENSG00000130772|ENST00000373842|MED18	ENSG00000130772|ENST00000373842|MED18	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.3621215820312	2	599.362462	1196.71037	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.069	1	12.001	11.501	12.501	-0.06806								0	0	0	0.264	1	16	16		1.8442	0	1				18312	3512	10352	10353	23199	23199					0.11988391698355372
KINDEILQFI	10	Unmodified	_KINDEILQFI_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2394104003906	3	411.567689	1231.68124	0.02436	1.0026E-05	1.0331	0.00042517	1.0574	0.0004352	411.56792244262806	49.269	0.71592	49.301	49.014	49.73	0.032047					36	25	2	0	0	0	0.3179	1	11244	11244		3.3196	0	1	206000	+		18313	13950	10353	10354	23200	23200					0.0746652588309189
KINEAFIEM	9	Oxidation (M)	_KINEAFIEM(Oxidation (M))_		KINEAFIEM(1)		KINEAFIEM(110)	0	0	1		ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.779052734375	2	555.778625	1109.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.453	1	41.543	41.043	42.043	0.090252								0	0	0	0.00037335	1	8937	8937		106.94	54.672	1				18314	481	10354	10355	23201	23201		52			-0.007693403568737267
KINEAFIEM	9	Oxidation (M)	_KINEAFIEM(Oxidation (M))_		KINEAFIEM(1)		KINEAFIEM(130)	0	0	1		ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.779296875	2	555.778625	1109.5427	0.42586	0.00023669	-0.17825	-9.9065E-05	0.24762	0.00013762	555.7785374601889	41.483	0.44055	41.579	41.259	41.7	0.096626					27	17	2	0	0	0	0.00045155	1	8931	8931		129.77	71.094	1	2274400			18315	481	10354	10355	23202	23202		52			-0.007693403568737267
KINEAIVAV	9	Unmodified	_KINEAIVAV_					0	0	0		ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.79254150390625	2	478.792392	955.570232	0.15562	7.4509E-05	0.56829	0.00027209	0.72391	0.0003466	478.7925589812521	43.269	0.92414	43.269	42.954	43.878	0					71	33	4	0	0	0	0.14786	1	9530	9530		31.268	7.2478	1	1308200			18316	1304	10355	10356	23203	23203					0.09066930965650499
KINEAIVAV	9	Unmodified	_KINEAIVAV_					0	0	0		ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.79248046875	2	478.792392	955.570232	0.39158	0.00018749	0.41725	0.00019978	0.80883	0.00038726	478.79242159479855	43.136	0.76694	43.213	42.943	43.71	0.077518					64	27	4	0	0	0	0.17696	1	9460	9460		36.506	7.4246	1	1285500			18317	1304	10355	10356	23204	23204					0.09066930965650499
KINEAIVAV	9	Unmodified	_KINEAIVAV_					0	0	0		ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	ENSG00000087302|ENST00000261700|RTRAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.79229736328125	2	478.792392	955.570232	0.16326	7.8167E-05	0.43626	0.00020888	0.59952	0.00028705	478.7925160377044	43.066	0.83846	43.151	42.846	43.685	0.08493					62	30	3	0	0	0	0.07944	1	9454	9454		41.956	12.874	1	1384800			18318	1304	10355	10356	23205	23205					0.09066930965650499
KINKGQPAP	9	Unmodified	_KINKGQPAP_					0	0	0		nc|ENSG00000198022|A6NJ88|SAGE2P	nc|ENSG00000198022|A6NJ88|SAGE2P	nc|ENSG00000198022|A6NJ88|SAGE2P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.2484436035156	2	476.782359	951.550165	0.45096	0.00021501	-0.1538	-7.3328E-05	0.29716	0.00014168	476.78225485992175	20.069	0.80314	20.013	19.423	20.227	-0.055693					48	28	2	0	0	0	0.26168	1	2265	2265		0.45834	0	1	196630			18319	12902	10356	10357	23206	23206					0.07245180025699938
KINKKRIAL	9	Unmodified	_KINKKRIAL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.3717041015625	2	542.371675	1082.7288	0.30603	0.00016598	0.04427	2.4011E-05	0.3503	0.00019	542.3716629934694	16.069	0.73206	16.069	15.842	16.574	0					72	25	4	0	0	0	0.014888	2	1189	1189;1238		71.922	19.654	1	569300			18320	4775	10357	10358	23207;23208	23207					0.19074269664588428
KINKKRIAL	9	Unmodified	_KINKKRIAL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.371826171875	2	542.371675	1082.7288	0.32524	0.0001764	0.1325	7.1863E-05	0.45773	0.00024826	542.3716738637016	16.207	0.77501	16.093	15.811	16.586	-0.11434					70	26	4	0	0	0	0.004681	3	1227	1227;1271;1315		88.954	36.686	1	581600			18321	4775	10357	10358	23209;23210;23211	23209					0.19074269664588428
KINKKRIAL	9	Unmodified	_KINKKRIAL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.371826171875	2	542.371675	1082.7288	0.45052	0.00024435	0.054987	2.9824E-05	0.50551	0.00027417	542.371642199702	16.133	0.68879	16.07	15.838	16.526	-0.062532					64	23	4	0	0	0	0.0083926	3	1255	1206;1255;1305		81.89	35.869	1	533500			18322	4775	10357	10358	23212;23213;23214	23213					0.19074269664588428
KINMASMLHD	10	Unmodified	_KINMASMLHD_					0	0	0			REV__ENST00000467894.5_1_1:33790468-33797238:-|nuORF	REV__ENST00000467894.5_1_1:33790468-33797238:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3197631835938	2	580.283551	1158.55255	-0.021198	-1.2301E-05	-1.8005	-0.0010448	-1.8216	-0.0010571	580.2838051594764	14.799	0.22857	14.734	14.618	14.846	-0.064413					16	7	3	0	0	0	0.32132	1	833	833		1.4819	0.79152	1	29270	+		18323	15693	10358	10359	23215	23215					-0.02038475623157865
KINTFIWMR	9	Unmodified	_KINTFIWMR_					0	0	0			REV__Harlequin-int_dup372|chr10:84170027-84170994:-|2.229433011874135|0.252139802420439|3.14|509.0|25|2|sense	REV__Harlequin-int_dup372|chr10:84170027-84170994:-|2.229433011874135|0.252139802420439|3.14|509.0|25|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.215576171875	3	403.558471	1207.65358	-0.17042	-6.8776E-05	-4.1023	-0.0016555	-4.2727	-0.0017243	403.55652262221605	21.807	0.55301	21.758	21.373	21.926	-0.049377					34	19	2	0	0	0	0.25527	1	2937	2937		9.544	5.6981	1	165150	+		18324	22714	10359	10360	23216	23216					0.05806344141842601
KIPAWRLC	8	Unmodified	_KIPAWRLC_					0	0	0		ENST00000354883.10_1_3:66428324-66428423:+|nuORF	ENST00000354883.10_1_3:66428324-66428423:+|nuORF	ENST00000354883.10_1_3:66428324-66428423:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2642822265625	2	493.783847	985.553142	-0.030038	-1.4832E-05	1.9125	0.00094436	1.8825	0.00092953	493.78489914273416	13.518	0.35495	13.451	13.245	13.6	-0.067496					17	12	2	0	0	0	0.344	1	488	488		0.69038	0.28966	1	98845			18325	9602	10360	10361	23217	23217					0.05978731878872168
KIPDLKLLVEK	11	Unmodified	_KIPDLKLLVEK_					0	0	0		ENSG00000156831|ENST00000287437|NSMCE2	ENSG00000156831|ENST00000287437|NSMCE2	ENSG00000156831|ENST00000287437|NSMCE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.2800598144531	3	432.614751	1294.82242	0.012676	5.484E-06	-0.60274	-0.00026076	-0.59007	-0.00025527	432.61444087443937	49.631	0.47135	49.631	49.292	49.763	0					27	16	2	0	0	0	0.32737	1	11434	11434		11.065	6.9487	1	148630			18326	5258	10361	10362	23218	23218					0.1868052425636506
KIPDLKLLVEK	11	Unmodified	_KIPDLKLLVEK_					0	0	0		ENSG00000156831|ENST00000287437|NSMCE2	ENSG00000156831|ENST00000287437|NSMCE2	ENSG00000156831|ENST00000287437|NSMCE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.280029296875	3	432.614751	1294.82242	-0.064193	-2.7771E-05	-0.53282	-0.00023051	-0.59701	-0.00025828	432.6145408226524	49.619	0.36526	49.664	49.46	49.825	0.044891					19	13	2	0	0	0	0.33158	1	11472	11472		4.6037	3.7588	1	141180			18327	5258	10361	10362	23219	23219					0.1868052425636506
KIPDLKLLVEK	11	Unmodified	_KIPDLKLLVEK_					0	0	0		ENSG00000156831|ENST00000287437|NSMCE2	ENSG00000156831|ENST00000287437|NSMCE2	ENSG00000156831|ENST00000287437|NSMCE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.2802429199219	3	432.614751	1294.82242	-0.15361	-6.6453E-05	-0.53019	-0.00022937	-0.68379	-0.00029582	432.6144412028048	49.601	0.43117	49.625	49.349	49.78	0.024551					22	15	2	0	0	0	0.32987	1	11422	11422		7.4291	4.9943	1	102110			18328	5258	10361	10362	23220	23220					0.1868052425636506
KIPEESSDKS	10	Unmodified	_KIPEESSDKS_					0	0	0		nc|ENSG00000146147|Q5VWP3-1|MLIP;nc|ENSG00000146147|Q5VWP3-4|MLIP;ENST00000511744.1_1_6:53976250-54068425:+|nuORF;ENSG00000146147|ENST00000502396|MLIP	nc|ENSG00000146147|Q5VWP3-1|MLIP	nc|ENSG00000146147|Q5VWP3-1|MLIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.28076171875	2	560.280043	1118.54553	0.15316	8.581E-05	0.89315	0.00050042	1.0463	0.00058623	560.2804709592953	17.717	0.45204	17.599	17.414	17.866	-0.11739					25	15	2	0	0	0	0.40403	1	1746	1746		2.7352	0.89096	1	98364			18329	4694	10362	10363	23221	23221					-0.0089979369838602
KIPGLLGVFQK	11	Unmodified	_KIPGLLGVFQK_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3794555664062	2	600.379166	1198.74378	0.59977	0.00036009	-0.48094	-0.00028875	0.11882	7.1339E-05	600.3789640749839	58.472	0.46967	58.472	58.243	58.712	0					24	15	2	0	0	0	0.42762	1	14197	14197		7.609	1.8771	1	198720			18330	3141	10363	10364	23222	23222					0.15235716741926808
KIPGLLGVFQK	11	Unmodified	_KIPGLLGVFQK_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	600.379166	1198.74378	0.54307	0.00032605	-0.23577	-0.00014155	0.3073	0.0001845	600.3789217947982	58.306	0.56455	58.391	58.138	58.702	0.085617	-0.078834	9.1981E-05	NaN	7.609	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172210			18331	3141	10363	10364							0.15235716741926808
KIPGLLGVFQK	11	Unmodified	_KIPGLLGVFQK_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	600.379166	1198.74378	0.73899	0.00044367	-0.45577	-0.00027363	0.28322	0.00017004	600.3788285193016	58.561	0.38117	58.547	58.303	58.684	-0.014271	0.076643	-0.00017218	NaN	7.609	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197450			18332	3141	10363	10364							0.15235716741926808
KIPIAGTVVT	10	Unmodified	_KIPIAGTVVT_					0	0	0		nc|ENSG00000129675|Q15052-2|ARHGEF6;ENSG00000129675|ENST00000250617|ARHGEF6	nc|ENSG00000129675|Q15052-2|ARHGEF6	nc|ENSG00000129675|Q15052-2|ARHGEF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.8162536621094	2	499.815867	997.617182	0.37839	0.00018912	-0.14697	-7.3459E-05	0.23142	0.00011567	499.81583584182243	53.035	0.49218	53.025	52.812	53.305	-0.0096054					25	17	2	0	0	0	0.30872	1	12507	12507		19.362	3.2128	1	285590			18333	3436	10364	10365	23223	23223					0.11827790516804271
KIPMVLHLF	9	Unmodified	_KIPMVLHLF_					0	0	0		ENSG00000070367|ENST00000621441|EXOC5;ENST00000510543.1_1_4:63683420-63684509:+|nuORF;ENST00000554011.5_1_14:57675329-57698504:-|nuORF	ENSG00000070367|ENST00000621441|EXOC5;ENST00000554011.5_1_14:57675329-57698504:-|nuORF	ENSG00000070367|ENST00000621441|EXOC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7718505859375	2	549.33063	1096.64671	0.081727	4.4895E-05	-0.65437	-0.00035946	-0.57264	-0.00031457	549.3302272136355	13.807	0.18863	13.807	13.714	13.902	0					10	6	2	0	0	0	0.26117	1	522	522		2.3027	0.4585	1	30430			18334	922;11828	10365	10366	23224	23224					0.10225031261279582
KIQETFAQK	9	Unmodified	_KIQETFAQK_					0	0	0		ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8073120117188	2	546.806031	1091.59751	0.46499	0.00025426	1.3168	0.00072005	1.7818	0.00097431	546.8067895142162	20.289	0.50907	20.289	20.113	20.622	0					29	18	2	0	0	0	0.20679	1	2519	2519		22.658	8.2527	1	226160			18335	11468	10366	10367	23225	23225					0.05537414506011373
KIQETFAQK	9	Unmodified	_KIQETFAQK_					0	0	0		ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	ENST00000519940.5_1_19:48735037-48741646:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8062133789062	2	546.806031	1091.59751	0.79185	0.00043299	0.89751	0.00049076	1.6894	0.00092375	546.8064503850851	20.535	0.49426	20.425	20.259	20.753	-0.11003					32	17	3	0	0	0	0.2141	1	2575	2575		21.59	7.6841	1	166160			18336	11468	10366	10367	23226	23226					0.05537414506011373
KIQPALQEK	9	Unmodified	_KIQPALQEK_					0	0	0		ENSG00000123349|ENST00000334478|PFDN5;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3191528320312	2	527.816399	1053.61824	0.29094	0.00015356	1.4921	0.00078755	1.783	0.00094111	528.318958566159	19.041	0.7577	19.041	18.79	19.547	0					69	26	4	0	0	0	0.12279	1	2138	2138		34.932	5.8505	1	263560			18337	3099	10367	10368	23227	23227					0.09358004885712035
KIQPALQEK	9	Unmodified	_KIQPALQEK_					0	0	0		ENSG00000123349|ENST00000334478|PFDN5;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3192138671875	2	527.816399	1053.61824	0.28697	0.00015147	1.631	0.00086087	1.918	0.0010123	528.3189239835098	19.252	0.65123	19.136	18.863	19.514	-0.11592					65	22	4	0	0	0	0.13296	1	2174	2174		33.445	9.4243	1	278620			18338	3099	10367	10368	23228	23228					0.09358004885712035
KIQPALQEK	9	Unmodified	_KIQPALQEK_					0	0	0		ENSG00000123349|ENST00000334478|PFDN5;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.31884765625	2	527.816399	1053.61824	0.34968	0.00018457	1.4646	0.00077306	1.8143	0.00095762	528.3188483045254	19.196	0.61304	19.141	18.903	19.516	-0.055693					60	20	4	0	0	0	0.10059	1	2171	2171		38.176	10.547	1	291230			18339	3099	10367	10368	23229	23229					0.09358004885712035
KIQQKPQI	8	Unmodified	_KIQQKPQI_					0	0	0		ENST00000248594.10_1_7:77267997-77268610:+|nuORF	ENST00000248594.10_1_7:77267997-77268610:+|nuORF	ENST00000248594.10_1_7:77267997-77268610:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2637939453125	2	491.805834	981.597115	0.44426	0.00021849	0.72439	0.00035626	1.1686	0.00057475	491.8060718643461	59.143	0.44616	59.129	58.831	59.278	-0.014267					17	15	2	0	0	0	0.30503	1	14369	14369		30.225	0	1	165980			18340	8907	10368	10369	23230	23230					0.10558039576847023
KIQSMREAQR	10	Unmodified	_KIQSMREAQR_					0	0	0			REV__ENSG00000010610|ENST00000011653|CD4	REV__ENSG00000010610|ENST00000011653|CD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.22821044921875	3	416.227673	1245.66119	0.16155	6.7242E-05	-0.1021	-4.2496E-05	0.059455	2.4747E-05	416.2275167959067	16.545	0.81336	16.482	16.235	17.049	-0.062534					60	28	4	0	0	0	0.32137	1	1355	1355		1.7423	0	1	265660	+		18341	13416	10369	10370	23231	23231					0.048184516714627534
KIRCLLKKKYR	11	Unmodified	_KIRCLLKKKYR_					0	0	0		ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.80853271484375	3	483.646391	1447.91734	0.80561	0.00038963	0.36329	0.00017571	1.1689	0.00056534	483.98107969330243	47.06	1.0401	47.114	46.768	47.808	0.054375					49	37	2	0	0	0	0.33351	1	10748	10748		0.094841	0.094841	1	359220			18342	9735	10370	10371	23232	23232					0.2113017924655196
KIRCLLKKKYR	11	Unmodified	_KIRCLLKKKYR_					0	0	0		ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	483.646391	1447.91734	0.53277	0.00025767	0.47949	0.00023191	1.0123	0.00048958	483.646496893615	47.023	0.39538	47.023	46.932	47.328	0	0.071814	0.00023889	NaN	0.094841	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232180			18343	9735	10370	10371							0.2113017924655196
KIRCLLKKKYR	11	Unmodified	_KIRCLLKKKYR_					0	0	0		ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	ENST00000367450.7_1_1:192992066-192992111:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	483.646391	1447.91734	0.42607	0.00020607	0.1534	7.4192E-05	0.57947	0.00028026	483.6463794462615	46.663	0.40092	46.716	46.554	46.955	0.05257	-0.23513	-0.00023425	NaN	0.094841	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397470			18344	9735	10370	10371							0.2113017924655196
KIRETSPPRG	10	Unmodified	_KIRETSPPRG_					0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8278198242188	2	570.827829	1139.64111	0.074944	4.278E-05	0.062657	3.5766E-05	0.1376	7.8546E-05	570.827852302554	12.483	0.31546	12.387	12.236	12.552	-0.096607					16	10	2	0	0	0	0.39227	1	143	143		4.897	0.95262	1	50430	+		18345	14997	10371	10372	23233	23233					0.07687024003166698
KIRKTIMQL	9	Oxidation (M)	_KIRKTIM(Oxidation (M))QL_		KIRKTIM(1)QL		KIRKTIM(48)QL	0	0	1		ENST00000592597.1_1_19:1093873-1095344:-|nuORF;ENSG00000099817|ENST00000615234|POLR2E	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.8551635742188	2	573.855001	1145.69545	0.16638	9.5476E-05	0.025266	1.4499E-05	0.19164	0.00010998	573.8549659487514	21.943	0.80096	21.943	21.704	22.505	0					75	28	4	0	0	0	0.063898	2	3008	2959;3008		47.732	27.317	1	635730			18346	1496	10372	10373	23234;23235	23235		187			0.12842899830388887
KIRKTIMQL	9	Oxidation (M)	_KIRKTIM(Oxidation (M))QL_		KIRKTIM(1)QL		KIRKTIM(55)QL	0	0	1		ENST00000592597.1_1_19:1093873-1095344:-|nuORF;ENSG00000099817|ENST00000615234|POLR2E	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8550415039062	2	573.855001	1145.69545	0.33384	0.00019158	0.036825	2.1132E-05	0.37067	0.00021271	573.8548966795672	22.047	0.81655	21.947	21.682	22.499	-0.10034					67	29	3	0	0	0	0.043711	1	3048	3048		55.235	30.244	1	797990			18347	1496	10372	10373	23236	23236		187			0.12842899830388887
KIRKTIMQL	9	Oxidation (M)	_KIRKTIM(Oxidation (M))QL_		KIRKTIM(1)QL		KIRKTIM(61)QL	0	0	1		ENST00000592597.1_1_19:1093873-1095344:-|nuORF;ENSG00000099817|ENST00000615234|POLR2E	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.8550415039062	2	573.855001	1145.69545	0.097152	5.5751E-05	0.16321	9.3657E-05	0.26036	0.00014941	573.8550373080612	22.08	1.0382	22.031	21.717	22.755	-0.049377					80	36	3	0	0	0	0.027957	1	3034	3034		61.09	29.822	1	697170			18348	1496	10372	10373	23237	23237		187			0.12842899830388887
KIRNFVVVF	9	Unmodified	_KIRNFVVVF_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2848510742188	2	561.345126	1120.6757	0.64502	0.00036208	-1.4245	-0.00079966	-0.77952	-0.00043758	561.3441411962776	54.652	0.56892	54.652	54.405	54.974	0					48	20	3	0	0	0	0.2322	1	13043	13043		20.454	7.9221	1	873870			18349	2627	10373	10374	23238	23238					0.12018891881939453
KIRNFVVVF	9	Unmodified	_KIRNFVVVF_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.28466796875	2	561.345126	1120.6757	0.64557	0.00036239	-1.2929	-0.00072576	-0.64732	-0.00036337	561.3442357157553	54.621	0.69523	54.684	54.41	55.105	0.063206					48	25	3	0	0	0	0.2322	1	13006	13006		20.454	10.38	1	973980			18350	2627	10373	10374	23239	23239					0.12018891881939453
KIRNFVVVF	9	Unmodified	_KIRNFVVVF_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7400512695312	2	561.345126	1120.6757	0.62278	0.0003496	-1.2974	-0.0007283	-0.67464	-0.00037871	561.3442590580406	54.856	0.55328	54.84	54.605	55.158	-0.015923					44	20	3	0	0	0	0.24688	1	13066	13066		14.838	4.0143	1	1004100			18351	2627	10373	10374	23240	23240					0.12018891881939453
KIRPHIATL	9	Unmodified	_KIRPHIATL_					0	0	0		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;nc|ENSG00000134644|Q14671-4|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.266845703125	2	524.834926	1047.6553	0.41323	0.00021688	-0.59077	-0.00031006	-0.17754	-9.3177E-05	524.8345009619666	27.223	0.34456	27.223	26.979	27.324	0					21	11	2	0	0	0	0.24993	1	4598	4598		13.042	5.1323	1	78951			18352	3799	10374	10375	23241	23241					0.13337721222137588
KIRPHIATL	9	Unmodified	_KIRPHIATL_					0	0	0		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;nc|ENSG00000134644|Q14671-4|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3134765625	2	524.834926	1047.6553	0.32323	0.00016964	-0.20103	-0.00010551	0.1222	6.4134E-05	524.8346579200804	27.191	0.33625	27.169	26.955	27.291	-0.021412					19	11	2	0	0	0	0.25706	1	4604	4604		6.7232	2.7788	1	79458			18353	3799	10374	10375	23242	23242					0.13337721222137588
KIRPHIATL	9	Unmodified	_KIRPHIATL_					0	0	0		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;nc|ENSG00000134644|Q14671-4|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.266357421875	2	524.834926	1047.6553	0.41941	0.00022012	-0.46663	-0.0002449	-0.047218	-2.4782E-05	524.8347293825412	27.228	0.33386	27.216	26.984	27.318	-0.01156					19	11	2	0	0	0	0.24848	1	4583	4583		13.906	5.3128	1	94308			18354	3799	10374	10375	23243	23243					0.13337721222137588
KIRQALEP	8	Unmodified	_KIRQALEP_					0	0	0			REV__ENSG00000204020|ENST00000404459|LIPN	REV__ENSG00000204020|ENST00000404459|LIPN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.777587890625	2	477.790184	953.565815	0.26288	0.0001256	-0.95368	-0.00045566	-0.6908	-0.00033006	477.7897150320363	20.665	0.51704	20.665	20.395	20.912	0					27	17	2	0	0	0	0.45307	1	2586	2586		4.756	0	1	57007	+		18355	18916	10375	10376	23244	23244					0.08717466542736929
KIRTVQDAL	9	Unmodified	_KIRTVQDAL_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7954711914062	2	522.314023	1042.61349	0.44633	0.00023313	-0.76524	-0.00039969	-0.3189	-0.00016657	522.3136078243997	29.667	0.63957	29.679	29.218	29.858	0.012266					38	21	2	0	0	0	0.25049	1	5331	5331		13.615	5.4593	1	146950			18356	1815	10376	10377	23245	23245					0.0938912074293512
KIRTVQDAL	9	Unmodified	_KIRTVQDAL_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.794921875	2	522.314023	1042.61349	0.20349	0.00010628	-0.6107	-0.00031898	-0.40721	-0.00021269	522.3138328726512	29.635	0.72264	29.648	29.22	29.943	0.013474					33	24	2	0	0	0	0.25612	1	5344	5344		8.1555	2.4237	1	141410			18357	1815	10376	10377	23246	23246					0.0938912074293512
KIRVHDRGLT	10	Unmodified	_KIRVHDRGLT_					0	0	0			REV__ENST00000588072.5_1_18:11884309-11884447:-|nuORF	REV__ENST00000588072.5_1_18:11884309-11884447:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8577270507812	2	597.856921	1193.69929	0.53282	0.00031855	-0.17984	-0.00010752	0.35298	0.00021103	597.8569574362817	90.616	0.40546	90.706	90.516	90.921	0.090675					73	31	3	0	0	0	0.40106	1	24053	24053		3.2813	0.28607	1	255130	+		18358	22542	10377	10378	23247	23247					0.11018705648439209
KIRWLRAFR	9	Unmodified	_KIRWLRAFR_					0	0	0		nc|ENSG00000131089|O43307-3|ARHGEF9;nc|ENSG00000131089|O43307-2|ARHGEF9;nc|ENSG00000131089|O43307|ARHGEF9;ENSG00000131089|ENST00000671741|ARHGEF9	nc|ENSG00000131089|O43307-3|ARHGEF9	nc|ENSG00000131089|O43307-3|ARHGEF9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.9273681640625	3	415.927886	1244.76183	0.18732	7.791E-05	-0.59599	-0.00024789	-0.40868	-0.00016998	415.9273765115051	28.858	0.54454	28.854	28.519	29.064	-0.0042572					29	18	2	0	0	0	0.31164	1	5109	5109		7.1017	0.064636	1	216970			18359	3543	10378	10379	23248	23248					0.14923896507275458
KIRWLRAFR	9	Unmodified	_KIRWLRAFR_					0	0	0		nc|ENSG00000131089|O43307-3|ARHGEF9;nc|ENSG00000131089|O43307-2|ARHGEF9;nc|ENSG00000131089|O43307|ARHGEF9;ENSG00000131089|ENST00000671741|ARHGEF9	nc|ENSG00000131089|O43307-3|ARHGEF9	nc|ENSG00000131089|O43307-3|ARHGEF9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	415.927886	1244.76183	0.023671	9.8456E-06	-0.32539	-0.00013534	-0.30172	-0.00012549	416.2624455599657	28.842	0.6866	28.843	28.466	29.153	0.00046921	-0.014374	-3.196E-06	NaN	7.1017	37	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151410			18360	3543	10378	10379							0.14923896507275458
KIRYRENIASL	11	Unmodified	_KIRYRENIASL_					0	0	0		ENSG00000100749|ENST00000216639|VRK1	ENSG00000100749|ENST00000216639|VRK1	ENSG00000100749|ENST00000216639|VRK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.258544921875	3	454.933254	1361.77793	-0.14181	-6.4516E-05	0.45233	0.00020578	0.31051	0.00014126	454.93324690379023	28.49	0.50195	28.491	28.078	28.58	0.0004673					23	17	2	0	0	0	0.33287	1	4855	4855		2.8433	0	1	121100			18361	1628	10379	10380	23249	23249					0.11151513162894844
KISNIIKQFK	10	Unmodified	_KISNIIKQFK_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.92364501953125	3	406.923807	1217.74959	-0.76321	-0.00031057	0.31595	0.00012857	-0.44726	-0.000182	406.92386816080233	34.446	0.58521	34.446	34.22	34.805	0					58	20	4	0	0	0	0.15159	3	6810	6759;6810;6827		38.559	18.572	1	420590			18362	1226	10380	10381	23250;23251;23252	23251					0.14942815253607478
KISNIIKQFK	10	Unmodified	_KISNIIKQFK_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.9236145019531	3	406.923807	1217.74959	-0.71173	-0.00028962	0.21654	8.8117E-05	-0.49518	-0.0002015	406.92388367939947	34.335	0.60485	34.402	34.149	34.754	0.06636					56	21	3	0	0	0	0.15159	3	6771	6717;6771;6795		38.559	18.572	1	420790			18363	1226	10380	10381	23253;23254;23255	23254					0.14942815253607478
KISNIIKQFK	10	Unmodified	_KISNIIKQFK_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.3282470703125	2	609.882073	1217.74959	-0.22732	-0.00013864	0.77084	0.00047012	0.54352	0.00033148	609.8825657935733	34.28	0.30492	34.346	34.235	34.54	0.06636					16	10	2	0	0	0	0.32082	1	6745	6745		1.3295	0.92882	1	65026			18364	1226	10380	10381	23256	23256					0.14942815253607478
KISNIIKQFK	10	Unmodified	_KISNIIKQFK_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.91522216796875	3	406.923807	1217.74959	-0.32814	-0.00013353	-0.2307	-9.3875E-05	-0.55884	-0.0002274	406.92371166966626	34.264	0.56652	34.33	34.127	34.694	0.0667					49	19	3	0	0	0	0.26292	3	6721	6721;6792;6818		24.957	12.101	1	398070			18365	1226	10380	10381	23257;23258;23259	23257					0.14942815253607478
KISNSPEKP	9	Unmodified	_KISNSPEKP_					0	0	0		ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.6715087890625	2	500.277106	998.53966	0.0055419	2.7725E-06	3.3569	0.0016794	3.3625	0.0016822	500.2767234528222	18.465	0.28695	18.407	18.313	18.6	-0.058172					13	9	3	0	0	0	0.25779	1	1969	1969		6.2058	1.4498	1	21531			18366	4245	10381	10382	23260	23260					0.04033152580609567
KISRNRLFTL	10	Unmodified	_KISRNRLFTL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.2436218261719	3	416.59094	1246.75099	0.046581	1.9405E-05	0.70164	0.0002923	0.74823	0.0003117	416.5914739024312	35.676	0.44442	35.676	35.412	35.856	0					24	15	2	0	0	0	0.31701	1	7205	7205		10.899	2.9536	1	302730	+		18367	13586	10382	10383	23261	23261					0.13748449342347158
KISTVVSSK	9	Unmodified	_KISTVVSSK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.77227783203125	2	474.78985	947.565146	0.1285	6.1011E-05	-0.23104	-0.0001097	-0.10254	-4.8686E-05	474.7898512013426	16.187	0.25932	16.124	16.006	16.266	-0.062534					13	8	2	0	0	0	0.25612	1	1231	1231		8.1555	0.8663	1	35348			18368	4292	10383	10384	23262	23262					0.08926627103039664
KITDSAGHIF	10	Unmodified	_KITDSAGHIF_					0	0	0		ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENST00000534816.1_1_8:146220430-146220868:+|nuORF	ENST00000534816.1_1_8:146220430-146220868:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7921752929688	2	544.790381	1087.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.58	1	113.57	113.07	114.07	-0.017303								0	0	0	0.36922	1	29521	29521		6.7232	0.51738	1				18369	11665	10384	10385	23263	23263					0.025928414719373905
KITDVALEK	9	Unmodified	_KITDVALEK_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.80255126953125	2	508.802957	1015.59136	-0.042671	-2.1711E-05	0.0098767	5.0253E-06	-0.032794	-1.6686E-05	508.8028569947674	28.177	0.49442	28.177	27.924	28.418	0					39	16	3	0	0	0	0.17109	1	4876	4876		41.347	7.9021	1	435060			18370	2835	10385	10386	23264	23264					0.08418896274520193
KITDVALEK	9	Unmodified	_KITDVALEK_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8027648925781	2	508.802957	1015.59136	0.012443	6.3311E-06	-0.08854	-4.5049E-05	-0.076097	-3.8718E-05	508.80280653762475	28.174	0.60746	28.17	27.912	28.519	-0.0042572					48	21	4	0	0	0	0.1319	1	4876	4876		51.765	9.4526	1	409740			18371	2835	10385	10386	23265	23265					0.08418896274520193
KITDVALEK	9	Unmodified	_KITDVALEK_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8026428222656	2	508.802957	1015.59136	-0.086614	-4.407E-05	-0.055763	-2.8372E-05	-0.14238	-7.2442E-05	508.8028538396376	28.172	0.56121	28.173	27.905	28.466	0.0004673					45	19	3	0	0	0	0.14408	1	4867	4867		41.347	11.506	1	472550			18372	2835	10385	10386	23266	23266					0.08418896274520193
KITEPFLVV	9	Unmodified	_KITEPFLVV_					0	0	0		ENSG00000130775|ENST00000373921|THEMIS2;nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3175659179688	2	523.318243	1044.62193	0.4883	0.00025554	-1.4898	-0.00077961	-1.0015	-0.00052408	523.317263210497	63.066	0.64151	63.066	62.747	63.389	0					45	23	3	0	0	0	0.11201	1	15605	15605		36.506	8.0194	1	711800			18373	3513	10386	10387	23267	23267					0.10140674659578508
KIVPIAIQL	9	Unmodified	_KIVPIAIQL_					0	0	0		nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5	nc|ENSG00000012779|P09917-5|ALOX5	nc|ENSG00000012779|P09917-5|ALOX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.83685302734375	2	497.836603	993.658653	0.36893	0.00018367	0.55261	0.00027511	0.92154	0.00045878	497.8368877749802	65.486	0.82333	65.486	65.076	65.899	0					61	29	4	0	0	0	0.047483	1	16330	16330		53.833	21.527	1	646600			18374	454	10387	10388	23268	23268					0.16156971276120657
KIVPIAIQL	9	Unmodified	_KIVPIAIQL_					0	0	0		nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5	nc|ENSG00000012779|P09917-5|ALOX5	nc|ENSG00000012779|P09917-5|ALOX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.8366394042969	2	497.836603	993.658653	0.015394	7.6639E-06	0.81565	0.00040606	0.83104	0.00041372	497.8370543237688	65.385	0.80711	65.474	65.086	65.893	0.088882					59	29	3	0	0	0	0.041175	1	16288	16288		56.177	23.872	1	695420			18375	454	10387	10388	23269	23269					0.16156971276120657
KIVPIAIQL	9	Unmodified	_KIVPIAIQL_					0	0	0		nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5	nc|ENSG00000012779|P09917-5|ALOX5	nc|ENSG00000012779|P09917-5|ALOX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.83685302734375	2	497.836603	993.658653	0.34297	0.00017074	0.51259	0.00025519	0.85557	0.00042593	497.83692546198847	65.496	0.81832	65.484	65.074	65.892	-0.011337					58	29	3	0	0	0	0.016723	1	16320	16320		69.105	23.084	1	696380			18376	454	10387	10388	23270	23270					0.16156971276120657
KIWEEEDQLM	10	Unmodified	_KIWEEEDQLM_					0	0	0			REV__ENST00000392749.6_2_2:162016993-162036252:+|nuORF	REV__ENST00000392749.6_2_2:162016993-162036252:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.58203125	3	440.876194	1319.60675	0.089223	3.9337E-05	-2.9624	-0.0013061	-2.8732	-0.0012667	441.2092694854738	19.426	0.14213	19.37	19.253	19.395	-0.055693					6	4	2	0	0	0	0.31994	1	2216	2216		5.4027	1.2861	1	13153	+		18377	19571	10388	10389	23271	23271					-0.040266049905994805
KIWFTAQRLKQ	11	Unmodified	_KIWFTAQRLKQ_					0	0	0		ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	ENSG00000174306|ENST00000683867|ZHX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.3025817871094	3	473.613744	1417.8194	0.16824	7.9679E-05	-0.16491	-7.8106E-05	0.003321	1.5729E-06	473.61359813654263	49.604	0.56581	49.627	49.402	49.968	0.023102					35	20	2	0	0	0	0.33274	1	11457	11457		3.5927	1.6652	1	446110			18378	6785	10389	10390	23272	23272					0.12720693922210558
KIWQKQFR	8	Unmodified	_KIWQKQFR_					0	0	0		nc|ENSG00000144451|Q8N0X2-2|SPAG16	nc|ENSG00000144451|Q8N0X2-2|SPAG16	nc|ENSG00000144451|Q8N0X2-2|SPAG16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.819091796875	2	567.33255	1132.65055	0.41071	0.00023301	-1.8542	-0.0010519	-1.4435	-0.00081894	567.3317464189754	44.659	0.43385	44.734	44.449	44.883	0.075047					23	15	2	0	0	0	0.34218	1	9826	9826		9.3474	0	1	200810			18379	12737	10390	10391	23273	23273					0.08952837079368692
KIYASFVRCK	10	Unmodified	_KIYASFVRCK_					0	0	0			REV__ENST00000597698.1_1_19:53507635-53507983:+|nuORF	REV__ENST00000597698.1_1_19:53507635-53507983:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2362976074219	3	405.561993	1213.66415	-0.1352	-5.4831E-05	3.2629	0.0013233	3.1277	0.0012685	405.56352370176245	22.142	0.26546	22.042	21.86	22.125	-0.10034					13	9	2	0	0	0	0.31867	1	3059	3059		5.0475	0	1	36798	+		18380	19179	10391	10392	23274	23274					0.06586326796286812
KIYDRQVTK	9	Unmodified	_KIYDRQVTK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8328247070312	2	575.83258	1149.65061	-0.055319	-3.1854E-05	0.41033	0.00023628	0.35501	0.00020443	575.8328121356104	15.322	0.37023	15.322	15.127	15.498	0					19	12	2	0	0	0	0.2953	1	993	993		9.544	2.4423	1	51842			18381	1254	10392	10393	23275	23275					0.08176792288713841
KIYDRQVTK	9	Unmodified	_KIYDRQVTK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8329467773438	2	575.83258	1149.65061	0.13038	7.5076E-05	0.31949	0.00018397	0.44987	0.00025905	575.8328037752844	15.436	0.33986	15.326	15.151	15.491	-0.10981					22	11	3	0	0	0	0.31164	1	1036	1036		7.1017	2.2047	1	55206			18382	1254	10392	10393	23276	23276					0.08176792288713841
KIYDRQVTK	9	Unmodified	_KIYDRQVTK_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	575.83258	1149.65061	-0.034092	-1.9631E-05	0.1443	8.3093E-05	0.11021	6.3462E-05	575.8327222197812	15.455	0.35764	15.391	15.216	15.573	-0.064414	0.0446	-0.00019597	NaN	9.544	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53966			18383	1254	10392	10393							0.08176792288713841
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7849731445312	2	532.784764	1063.55498	0.22627	0.00012056	0.10383	5.532E-05	0.33011	0.00017588	532.784812318329	38.499	1.3562	38.499	38.239	39.595	0					148	48	5	0	0	0	0.00019464	4	8051	8004;8051;8104;8156		133.05	45.773	1	7747600			18384	3041	10393	10394	23277;23278;23279;23280	23278					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.784912109375	2	532.784764	1063.55498	0.39231	0.00020902	-0.19527	-0.00010404	0.19703	0.00010498	532.784668794222	38.45	1.3962	38.541	38.209	39.605	0.090881					122	50	4	0	0	0	0.00019464	5	8022	7976;8022;8073;8121;8180		133.05	43.651	1	8359500			18385	3041	10393	10394	23281;23282;23283;23284;23285	23282					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7849731445312	2	532.784764	1063.55498	0.54433	0.00029001	-0.23775	-0.00012667	0.30657	0.00016334	532.784621281383	38.424	1.328	38.521	38.235	39.563	0.097527					151	47	5	0	0	0	4.984E-07	3	8013	7965;8013;8055		160.69	60.934	1	7957500			18386	3041	10393	10394	23286;23287;23288	23287					0.025740193778119647
KIYMEMQFK	9	Unmodified	_KIYMEMQFK_					0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9153747558594	3	406.540089	1216.59844	-0.25702	-0.00010449	0.96307	0.00039153	0.70605	0.00028704	406.5405337371581	34.204	0.77929	34.271	34.047	34.826	0.0667					44	27	3	0	0	0	0.25346	1	6771	6771		10.8	6.2706	1	220730	+		18387	14568	10394	10395	23289	23289					-0.001198304409172124
KIYPGHGRR	9	Unmodified	_KIYPGHGRR_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000470961.1_1_3:101405187-101405544:-|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.3123779296875	2	542.312149	1082.60975	0.12467	6.7611E-05	0.4353	0.00023607	0.55997	0.00030368	542.3122759469959	12.653	0.57019	12.653	12.433	13.003	0					49	19	4	0	0	0	0.14076	1	187	187		32.305	32.305	1	288960			18388	2563	10395	10396	23290	23290					0.07174495759750243
KIYPGHGRR	9	Unmodified	_KIYPGHGRR_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000470961.1_1_3:101405187-101405544:-|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3125610351562	2	542.312149	1082.60975	0.22546	0.00012227	0.31834	0.00017264	0.54379	0.0002949	542.3123156189952	12.692	0.46077	12.593	12.433	12.894	-0.099291					38	15	3	0	0	0	0.23007	1	191	191		19.257	19.257	1	244740			18389	2563	10395	10396	23291	23291					0.07174495759750243
KIYPGHGRR	9	Unmodified	_KIYPGHGRR_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000470961.1_1_3:101405187-101405544:-|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3124389648438	2	542.312149	1082.60975	0.1374	7.4511E-05	0.39354	0.00021342	0.53094	0.00028794	542.3123013862655	12.693	0.50174	12.626	12.52	13.022	-0.067495					45	16	4	0	0	0	0.068501	1	205	205		46.021	19.137	1	244870			18390	2563	10395	10396	23292	23292					0.07174495759750243
KIYPGHGRR	9	Unmodified	_KIYPGHGRR_					0	0	0		ENSG00000114391|ENST00000394077|RPL24;ENST00000470961.1_1_3:101405187-101405544:-|nuORF	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	542.312149	1082.60975	0.1374	7.4511E-05	0.39354	0.00021342	0.53094	0.00028794	542.3123013862655	12.693	0.50174	12.626	12.52	13.022	-0.067495	0.0016971	3.1838E-05	NaN	46.021	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244870			18391	2563	10395	10396							0.07174495759750243
KKAIFNSPL	9	Unmodified	_KKAIFNSPL_					0	0	0		nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.7956237792969	2	509.30821	1016.60187	0.43939	0.00022378	-0.17181	-8.7506E-05	0.26757	0.00013628	509.307890832647	44.615	0.68121	44.683	44.325	45.006	0.068573					63	24	4	0	0	0	0.20626	1	9833	9833		22.736	0.98964	1	1140400			18392	12719	10396	10397	23293	23293					0.09422923719591836
KKAREDTRTR	10	Unmodified	_KKAREDTRTR_					0	0	0		CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant;ENSG00000176102|ENST00000323959|CSTF3	CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8602294921875	2	630.860192	1259.70583	0.59245	0.00037375	0.36994	0.00023338	0.96239	0.00060713	630.8598601518979	83.143	0.34587	83.143	82.975	83.321	0					32	13	3	0	0	0	0.40262	1	21728	21728		2.9952	0.26005	1	336110			18393	246	10397	10398	23294	23294					0.08636598809175666
KKAREDTRTR	10	Unmodified	_KKAREDTRTR_					0	0	0		CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant;ENSG00000176102|ENST00000323959|CSTF3	CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	630.860192	1259.70583	0.59245	0.00037375	0.36994	0.00023338	0.96239	0.00060713	630.8598601518979	83.143	0.34587	83.143	82.975	83.321	0	0.043379	-0.00015566	NaN	2.9952	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336110			18394	246	10397	10398							0.08636598809175666
KKAREDTRTR	10	Unmodified	_KKAREDTRTR_					0	0	0		CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant;ENSG00000176102|ENST00000323959|CSTF3	CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	630.860192	1259.70583	0.39161	0.00024705	0.6011	0.00037921	0.99271	0.00062626	630.8600924543399	82.997	0.78377	83.07	82.752	83.536	0.073097	-0.029467	0.000136	NaN	2.9952	67	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302480			18395	246	10397	10398							0.08636598809175666
KKAREDTRTR	10	Unmodified	_KKAREDTRTR_					0	0	0		CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant;ENSG00000176102|ENST00000323959|CSTF3	CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	630.860192	1259.70583	0.54543	0.00034409	0.43618	0.00027517	0.98161	0.00061926	630.8599476283523	83.106	0.76183	83.086	82.719	83.481	-0.020584	-0.013913	-7.2083E-05	NaN	2.9952	63	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334360			18396	246	10397	10398							0.08636598809175666
KKARGPIL	8	Unmodified	_KKARGPIL_					0	0	0		ENSG00000235699|ENST00000438525|CXorf51B;ENSG00000224440|ENST00000458472|CXorf51A	ENSG00000235699|ENST00000438525|CXorf51B	ENSG00000235699|ENST00000438525|CXorf51B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.2415466308594	2	441.797812	881.581071	-0.058297	-2.5755E-05	0.372	0.00016435	0.3137	0.00013859	441.7977799596995	22.673	0.69152	22.586	22.191	22.883	-0.087608					39	24	2	0	0	0	0.34319	1	3114	3114		5.7604	0	1	73867			18397	8442	10398	10399	23295	23295					0.1355437813061826
KKARGPIL	8	Unmodified	_KKARGPIL_					0	0	0		ENSG00000235699|ENST00000438525|CXorf51B;ENSG00000224440|ENST00000458472|CXorf51A	ENSG00000235699|ENST00000438525|CXorf51B	ENSG00000235699|ENST00000438525|CXorf51B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2418212890625	2	441.797812	881.581071	0.019382	8.5628E-06	0.29556	0.00013058	0.31494	0.00013914	441.79780325614024	22.637	0.71594	22.593	22.209	22.925	-0.044867					36	24	2	0	0	0	0.3439	1	3104	3104		2.8892	0	1	72282			18398	8442	10398	10399	23296	23296					0.1355437813061826
KKARGPIL	8	Unmodified	_KKARGPIL_					0	0	0		ENSG00000235699|ENST00000438525|CXorf51B;ENSG00000224440|ENST00000458472|CXorf51A	ENSG00000235699|ENST00000438525|CXorf51B	ENSG00000235699|ENST00000438525|CXorf51B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	441.797812	881.581071	-0.0095172	-4.2047E-06	0.38582	0.00017045	0.3763	0.00016625	441.7978899176827	22.579	0.51259	22.579	22.303	22.815	0	-0.006385	2.3984E-05	NaN	5.7604	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72357			18399	8442	10398	10399							0.1355437813061826
KKCDWKRKE	9	Unmodified	_KKCDWKRKE_					0	0	0		ENST00000467444.1_1_X:67412641-67430091:-|nuORF	ENST00000467444.1_1_X:67412641-67430091:-|nuORF	ENST00000467444.1_1_X:67412641-67430091:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5561218261719	3	407.55713	1219.64956	-0.025283	-1.0304E-05	-1.2918	-0.00052647	-1.317	-0.00053677	407.55655221727346	37.991	1.1252	37.991	37.616	38.741	0					73	39	2	0	0	0	0.25049	1	7868	7868		13.615	1.3742	1	1487600			18400	10823	10399	10400	23297	23297					0.048522546481535755
KKCYVRILQ	9	Unmodified	_KKCYVRILQ_					0	0	0			REV__ENST00000465985.1_1_20:35526176-35532601:-|nuORF	REV__ENST00000465985.1_1_20:35526176-35532601:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.843505859375	2	575.841894	1149.66923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.25	1	87.337	86.837	87.837	0.08709								0	0	0	0.25631	1	22991	22991		4.3292	0.73274	1		+		18401	14265	10400	10401	23298	23298					0.10038630658914371
KKDDSHSAEDS	11	Unmodified	_KKDDSHSAEDS_					0	0	0		nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.3377685546875	2	609.765288	1217.51602	0.31665	0.00019308	-2.2274	-0.0013582	-1.9107	-0.0011651	609.7637363720097	66.996	0.31546	67.08	66.933	67.248	0.083824					14	10	3	0	0	0	0.32996	1	16790	16790		8.1555	1.9497	1	125930			18402	902	10401	10402	23299	23299					-0.08403357714496451
KKDLGYAIAA	10	Unmodified	_KKDLGYAIAA_					0	0	0			REV__ENSG00000126803|ENST00000247207|HSPA2	REV__ENSG00000126803|ENST00000247207|HSPA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.301025390625	2	525.303124	1048.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.042	1	11.974	11.474	12.474	-0.06806								0	0	0	0.37664	1	8	8		3.5965	0	1		+		18403	15324	10402	10403	23300	23300					0.06934315994340068
KKEEKAYY	8	Unmodified	_KKEEKAYY_					0	0	0			REV__ENSG00000214866|ENST00000399143|DCDC2C	REV__ENSG00000214866|ENST00000399143|DCDC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.77978515625	2	529.779482	1057.54441	0.39179	0.00020756	0.33387	0.00017688	0.72565	0.00038444	529.7797952643648	24.056	0.9006	24.056	23.616	24.517	0					67	30	3	0	0	0	0.39068	1	3626	3626		20.454	2.0805	1	348980	+		18404	19066	10403	10404	23301	23301					0.017940367233904908
KKEERFLI	8	Unmodified	_KKEERFLI_					0	0	0		ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8170166015625	2	531.818941	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.45	1	114.44	113.94	114.94	-0.019096								0	0	0	0.37724	1	29717	29717		2.3027	0	1				18405	9810	10404	10405	23302	23302					0.09498308748334239
KKEERFLI	8	Unmodified	_KKEERFLI_					0	0	0		ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8180541992188	2	531.818941	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.37	1	115.35	114.85	115.85	-0.020988								0	0	0	0.37724	1	29921	29921		2.3027	0	1				18406	9810	10404	10405	23303	23303					0.09498308748334239
KKEHKLKQA	9	Unmodified	_KKEHKLKQA_					0	0	0			REV__ENSG00000230561|ENST00000514853|CCDC192	REV__ENSG00000230561|ENST00000514853|CCDC192	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2796020507812	2	555.343115	1108.67168	0.2679	0.00014878	-0.24148	-0.0001341	0.026417	1.467E-05	555.3429008944408	17.582	0.32208	17.582	17.424	17.746	0					18	10	3	0	0	0	0.26188	1	1679	1679		1.6526	0.32309	1	31969	+		18407	19130	10405	10406	23304	23304					0.12168802388214317
KKELLQRAEKK	11	Unmodified	_KKELLQRAEKK_					0	0	0		nc|ENSG00000153237|Q8NFR7-2|CCDC148;ENSG00000153237|ENST00000283233|CCDC148	nc|ENSG00000153237|Q8NFR7-2|CCDC148	nc|ENSG00000153237|Q8NFR7-2|CCDC148	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.62078857421875	3	457.620788	1369.84053	-0.30938	-0.00014158	0.39033	0.00017863	0.080958	3.7048E-05	457.6206641430143	106.33	0.13042	106.33	106.26	106.39	0					48	16	4	0	0	0	0.45822	2	28102	28102;28112		3.5927	1.3399	1	1932100			18408	5068	10406	10407	23305;23306	23305					0.17040659231088284
KKELLQRAEKK	11	Unmodified	_KKELLQRAEKK_					0	0	0		nc|ENSG00000153237|Q8NFR7-2|CCDC148;ENSG00000153237|ENST00000283233|CCDC148	nc|ENSG00000153237|Q8NFR7-2|CCDC148	nc|ENSG00000153237|Q8NFR7-2|CCDC148	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.6204528808594	3	457.620788	1369.84053	-0.08647	-3.957E-05	0.049891	2.2831E-05	-0.036579	-1.6739E-05	457.62053574917667	106.33	0.16375	106.32	106.25	106.41	-0.0060501					54	21	4	0	0	0	0.42582	1	28116	28116		7.846	3.7294	1	1784200			18409	5068	10406	10407	23307	23307					0.17040659231088284
KKELLQRAEKK	11	Unmodified	_KKELLQRAEKK_					0	0	0		nc|ENSG00000153237|Q8NFR7-2|CCDC148;ENSG00000153237|ENST00000283233|CCDC148	nc|ENSG00000153237|Q8NFR7-2|CCDC148	nc|ENSG00000153237|Q8NFR7-2|CCDC148	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.6206359863281	3	457.620788	1369.84053	0.10649	4.873E-05	-0.22861	-0.00010462	-0.12213	-5.5887E-05	457.62037791313065	106.33	0.13062	106.33	106.27	106.4	0.0050507					53	18	4	0	0	0	0.44088	1	28152	28152		5.8681	2.2755	1	2002600			18410	5068	10406	10407	23308	23308					0.17040659231088284
KKERNSIL	8	Unmodified	_KKERNSIL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.30133056640625	2	494.300916	986.587279	0.025465	1.2588E-05	0.4791	0.00023682	0.50457	0.00024941	494.3012028570233	14.426	0.25188	14.36	14.231	14.483	-0.066068					16	8	2	0	0	0	0.45431	1	736	736		4.3292	0	1	57965			18411	5186	10407	10408	23309	23309					0.09344851571484014
KKFDSIVKNR	10	Unmodified	_KKFDSIVKNR_					0	0	0			REV__ENST00000578593.1_1_17:61889231-61895755:+|nuORF	REV__ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.8501281738281	3	412.247062	1233.71936	-0.17065	-7.0349E-05	0.3842	0.00015839	0.21355	8.8037E-05	412.247192586257	14.271	0.25234	14.205	14.037	14.289	-0.066068					11	8	2	0	0	0	0.32143	1	630	630		1.5923	0	1	23846	+		18412	18811	10408	10409	23310	23310					0.11184456588421199
KKFDSIVKNR	10	Unmodified	_KKFDSIVKNR_					0	0	0			REV__ENST00000578593.1_1_17:61889231-61895755:+|nuORF	REV__ENST00000578593.1_1_17:61889231-61895755:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	412.247062	1233.71936	-0.12289	-5.0659E-05	0.27432	0.00011309	0.15144	6.243E-05	412.2473162191322	14.218	0.224	14.113	14.049	14.273	-0.10466	-0.046078	-8.6735E-05	NaN	5.4027	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36838	+		18413	18811	10408	10409							0.11184456588421199
KKFESQWHN	9	Unmodified	_KKFESQWHN_					0	0	0			REV__ENSG00000133131|ENST00000355610|MORC4	REV__ENSG00000133131|ENST00000355610|MORC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.2988891601562	2	602.298904	1202.58326	0.60766	0.000366	-1.8511	-0.0011149	-1.2434	-0.0007489	602.2983107795828	82.648	1.1535	82.648	81.797	82.95	0					69	42	3	0	0	0	0.34536	1	21630	21630		2.0598	0.40713	1	158250	+		18414	15611	10409	10410	23311	23311					-0.009932379222163945
KKFILYHFV	9	Unmodified	_KKFILYHFV_					0	0	0			REV__ENST00000370487.4_1_20:61431489-61431786:+|nuORF	REV__ENST00000370487.4_1_20:61431489-61431786:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8566284179688	2	597.855327	1193.6961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.834	1	88.924	88.424	89.424	0.090218								0	0	0	0.26334	1	23475	23475		2.0598	0	1		+		18415	20378	10410	10411	23312	23312					0.10700062541741318
KKFQSRYYPM	10	Unmodified	_KKFQSRYYPM_					0	0	0			REV__ENST00000589088.1_1_18:44266135-44268875:-|nuORF	REV__ENST00000589088.1_1_18:44266135-44268875:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2665100097656	3	449.900786	1346.68053	0.2153	9.6866E-05	1.0454	0.00047031	1.2607	0.00056717	450.23531034240114	43.026	0.84228	43.111	42.591	43.433	0.085197					67	30	4	0	0	0	0.31994	1	9272	9272		5.4027	2.7715	1	350910	+		18416	14280	10411	10412	23313	23313					0.021054079624036603
KKGPQLAHPKY	11	Unmodified	_KKGPQLAHPKY_					0	0	0			REV__ENST00000597145.5_1_19:4685559-4714096:-|nuORF	REV__ENST00000597145.5_1_19:4685559-4714096:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8704833984375	2	633.869497	1265.72444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.57	1	102.57	102.07	103.07	-0.0033646								0	0	0	0.36335	1	27315	27315		5.2969	1.3525	1		+		18417	22605	10412	10413	23314	23314					0.10220760451034039
KKHDWLRA	8	Unmodified	_KKHDWLRA_					0	0	0			REV__ENST00000529974.1_1_11:88068229-88070878:-|nuORF	REV__ENST00000529974.1_1_11:88068229-88070878:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2828369140625	2	527.30125	1052.58795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.736	1	89.736	89.236	90.236	0								0	0	0	0.37724	1	23758	23758		2.3027	0	1		+		18418	22004	10413	10414	23315	23315					0.06375691011157869
KKHEETEC	8	Unmodified	_KKHEETEC_					0	0	0		ENSG00000135148|ENST00000412615|TRAFD1;ENST00000550051.5_1_12:112563419-112579054:+|nuORF;nc|ENSG00000135148|O14545-2|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7900695800781	2	502.229299	1002.44404	-0.0023626	-1.1865E-06	-0.63547	-0.00031915	-0.63783	-0.00032034	502.22897735191737	14.356	0.24832	14.29	14.152	14.4	-0.066067					11	8	2	0	0	0	0.34408	1	724	724		2.3027	0	1	21272			18419	3849	10414	10415	23316	23316					-0.05707943601930765
KKHEETEC	8	Unmodified	_KKHEETEC_					0	0	0		ENSG00000135148|ENST00000412615|TRAFD1;ENST00000550051.5_1_12:112563419-112579054:+|nuORF;nc|ENSG00000135148|O14545-2|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	502.229299	1002.44404	0.032466	1.6305E-05	-0.59615	-0.0002994	-0.56368	-0.0002831	502.228752516184	14.276	0.11632	14.276	14.191	14.307	0	-0.00695	2.8662E-05	NaN	2.3027	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20665			18420	3849	10414	10415							-0.05707943601930765
KKHEITNPF	9	Unmodified	_KKHEITNPF_					0	0	0			REV__ENSG00000184677|ENST00000375647|ZBTB40	REV__ENSG00000184677|ENST00000375647|ZBTB40	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2897338867188	2	557.306198	1112.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.867	1	70.928	70.428	71.428	0.060783								0	0	0	0.22377	1	17977	17977		14.838	1.3304	1		+		18421	18329	10415	10416	23317	23317					0.04604834225892773
KKHRREISDAK	11	Unmodified	_KKHRREISDAK_					0	0	0			REV__SPTBN2|p.S1719Pfs*11|1|0.21|ENSG00000173898|chr11:66692572-66692572|G/-|frameshift_variant	REV__SPTBN2|p.S1719Pfs*11|1|0.21|ENSG00000173898|chr11:66692572-66692572|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.1643371582031	3	456.600386	1366.77933	0.015368	7.0171E-06	-0.019468	-8.8892E-06	-0.0040999	-1.872E-06	456.6001616081366	26.627	0.28983	26.627	26.499	26.789	0					14	9	2	0	0	0	0.33296	1	4413	4413		2.6312	1.4164	1	58067	+		18422	17811	10416	10417	23318	23318					0.11061147251666625
KKIIDELA	8	Unmodified	_KKIIDELA_					0	0	0			REV__ENSG00000008869|ENST00000233099|HEATR5B	REV__ENSG00000008869|ENST00000233099|HEATR5B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2857971191406	2	465.286943	928.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.948	1	85.029	84.529	85.529	0.080887								0	0	0	0.36961	1	22286	22286		5.7604	0	1		+		18423	13404	10417	10418	23319	23319					0.09219528591358994
KKINEYFILAK	11	Unmodified	_KKINEYFILAK_					0	0	0			REV__ENST00000309964.8_1_4:56342137-56348912:-|nuORF	REV__ENST00000309964.8_1_4:56342137-56348912:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.9150695800781	3	456.274617	1365.80202	-0.25981	-0.00011854	0.56495	0.00025777	0.30514	0.00013923	456.609167996332	38.793	0.41718	38.793	38.571	38.988	0					21	14	2	0	0	0	0.33236	1	8175	8175		4.4062	1.9714	1	112470	+		18424	19890	10418	10419	23320	23320					0.13375353596552486
KKKEKNKKHD	10	Unmodified	_KKKEKNKKHD_					0	0	0			REV__SBNO1|p.N1108Efs*3|1|0.22|ENSG00000139697|chr12:123309827-123309830|TATT/-|frameshift_variant	REV__SBNO1|p.N1108Efs*3|1|0.22|ENSG00000139697|chr12:123309827-123309830|TATT/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8843383789062	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.58	1	100.62	100.12	101.12	0.038994								0	0	0	0.38166	1	26869	26869		1.4819	0	1		+		18425	16002	10419	10420	23321	23321					0.12211243991396259
KKKHKHKHKHK	11	Unmodified	_KKKHKHKHKHK_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.3092041015625	3	488.644261	1462.91095	-0.11037	-5.393E-05	-1.1941	-0.00058349	-1.3045	-0.00063742	488.6436708929567	102.89	0.16278	102.89	102.75	102.91	0					31	22	2	0	0	0	0.33296	1	27347	27347		2.6312	0	1	287640			18426	787	10420	10421	23322	23322					0.19801422130035462
KKKIKKLVFD	10	Unmodified	_KKKIKKLVFD_					0	0	0			REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1	REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.9168090820312	2	623.915916	1245.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.74	1	103.75	103.25	104.25	0.0082703								0	0	0	0.38166	1	27566	27566		1.4819	1.1313	1		+		18427	13899	10421	10422	23323	23323					0.2042026518442981
KKKIKKLVFD	10	Unmodified	_KKKIKKLVFD_					0	0	0			REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1	REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.0574951171875	2	623.915916	1245.81728	-0.15946	-9.9488E-05	2.5034	0.0015619	2.344	0.0014624	623.9170955234988	103.33	0.039001	103.34	103.32	103.36	0.0082703					7	5	2	0	0	0	0.32132	1	27465	27465		1.4819	1.4819	1	4445800	+		18428	13899	10421	10422	23324	23324					0.2042026518442981
KKKIKKLVFD	10	Unmodified	_KKKIKKLVFD_					0	0	0			REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1	REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.9160766601562	2	623.915916	1245.81728	0.13734	8.569E-05	0.69334	0.00043259	0.83068	0.00051828	623.9160454830721	103.32	0.094688	103.32	103.24	103.33	-0.0011139					19	13	2	0	0	0	0.41085	1	27486	27486		1.4819	1.1313	1	5332400	+		18429	13899	10421	10422	23325	23325					0.2042026518442981
KKKIKKLVFD	10	Unmodified	_KKKIKKLVFD_					0	0	0			REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1	REV__nc|ENSG00000081019|Q5VWQ0-4|RSBN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	623.915916	1245.81728	0.13734	8.569E-05	0.69334	0.00043259	0.83068	0.00051828	623.9160454830721	103.32	0.094688	103.32	103.24	103.33	-0.0011139	-0.13388	-0.0010493	NaN	1.4819	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5332400	+		18430	13899	10421	10422							0.2042026518442981
KKKIRFLLC	9	Unmodified	_KKKIRFLLC_					0	0	0			REV__ENST00000352456.7_1_19:41812819-41812942:+|nuORF	REV__ENST00000352456.7_1_19:41812819-41812942:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2779541015625	2	574.870454	1147.72636	-0.00021743	-1.2499E-07	0.28064	0.00016133	0.28042	0.0001612	574.8707971185503	13.341	0.17689	13.241	13.129	13.306	-0.099291					7	5	2	0	0	0	0.26282	1	376	376		0	0	1	36076	+		18431	20167	10422	10423	23326	23326					0.15840097935324593
KKKKRFWKSKA	11	Unmodified	_KKKKRFWKSKA_					0	0	0		ENST00000494045.5_1_9:136278026-136283036:-|nuORF;nc|ENSG00000148300|Q9GZR2-2|REXO4;ENSG00000148300|ENST00000371942|REXO4	ENST00000494045.5_1_9:136278026-136283036:-|nuORF	ENST00000494045.5_1_9:136278026-136283036:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2843017578125	3	478.973384	1433.89832	0.62756	0.00030058	1.3763	0.0006592	2.0038	0.00095978	479.3079960607267	48.413	0.3743	48.46	48.258	48.632	0.047523					16	13	2	0	0	0	0.33347	1	11078	11078		0.08335	0	1	261220			18432	4800	10423	10424	23327	23327					0.19872965947160992
KKKKRRSRSRT	11	Unmodified	_KKKKRRSRSRT_					0	0	0		ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP;ENST00000537582.1_1_12:132281612-132284030:+|nuORF	ENSG00000061936|ENST00000261674|SFSWAP	ENSG00000061936|ENST00000261674|SFSWAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.9296569824219	3	477.642809	1429.9066	0.31293	0.00014947	0.76236	0.00036414	1.0753	0.0005136	477.97756393460156	45.002	0.38353	45.002	44.855	45.238	0					15	13	2	0	0	0	0.33351	1	10000	10000		0.094841	0.094841	1	115120			18433	762	10424	10425	23328	23328					0.20883912916497138
KKKKTSRW	8	Unmodified	_KKKKTSRW_					0	0	0		ENST00000456143.1_22:16404699-16405137:+|nuORF	ENST00000456143.1_22:16404699-16405137:+|nuORF	ENST00000456143.1_22:16404699-16405137:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7274169921875	2	531.33255	1060.65055	0.099653	5.2949E-05	-0.93062	-0.00049447	-0.83097	-0.00044152	531.3319177058206	18.615	0.16976	18.557	18.458	18.628	-0.058174					7	5	2	0	0	0	0.34434	1	1990	1990		0.79363	0.10326	1	29850			18434	10694	10425	10426	23329	23329					0.12264837079396784
KKKMPQSP	8	Unmodified	_KKKMPQSP_					0	0	0		ENST00000309334.5_2_10:63845597-63850657:+|nuORF	ENST00000309334.5_2_10:63845597-63850657:+|nuORF	ENST00000309334.5_2_10:63845597-63850657:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2655334472656	2	472.273312	942.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.051	1	91.051	90.551	91.551	0								0	0	0	0.37183	1	24162	24162		4.756	0	1				18435	9301	10426	10427	23330	23330					0.05850721779347623
KKKMPQSP	8	Unmodified	_KKKMPQSP_					0	0	0		ENST00000309334.5_2_10:63845597-63850657:+|nuORF	ENST00000309334.5_2_10:63845597-63850657:+|nuORF	ENST00000309334.5_2_10:63845597-63850657:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2654113769531	2	472.273312	942.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.11	1	91.11	90.61	91.61	0.00046539								0	0	0	0.37183	1	24169	24169		4.756	0	1				18436	9301	10426	10427	23331	23331					0.05850721779347623
KKKSTKTS	8	Unmodified	_KKKSTKTS_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	nc|ENSG00000113648|O75367|MACROH2A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2839050292969	2	454.282192	906.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.747	1	87.747	87.247	88.247	0								0	0	0	0.37078	1	23151	23151		5.2307	0	1				18437	2520	10427	10428	23332	23332					0.09281760305862008
KKKSTKTS	8	Unmodified	_KKKSTKTS_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	nc|ENSG00000113648|O75367|MACROH2A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.28375244140625	2	454.282192	906.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.632	1	88.721	88.221	89.221	0.089195								0	0	0	0.37724	1	23413	23413		2.3027	0	1				18438	2520	10427	10428	23333	23333					0.09281760305862008
KKKYQKRMKIK	11	Unmodified	_KKKYQKRMKIK_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2261657714844	3	493.649913	1477.92791	0.32989	0.00016285	-0.5964	-0.00029441	-0.26651	-0.00013156	493.6493845795003	41.754	0.62597	41.754	41.651	42.277	0					40	26	2	0	0	0	0.33347	1	9171	9171		0.08335	0	1	1729000			18439	3156	10428	10429	23334	23334					0.20806161900986808
KKKYQKRMKIK	11	Unmodified	_KKKYQKRMKIK_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.32391357421875	3	493.649913	1477.92791	0.34373	0.00016968	-0.15663	-7.7321E-05	0.1871	9.2362E-05	493.6497458281376	41.403	1.4897	41.403	40.161	41.651	0					169	54	4	0	0	0	0.33348	1	8708	8708		0.40827	0.40827	1	1652000			18440	3156	10428	10429	23335	23335					0.20806161900986808
KKKYQKRMKIK	11	Unmodified	_KKKYQKRMKIK_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.81103515625	3	493.649913	1477.92791	0.17507	8.6425E-05	0.17249	8.5148E-05	0.34756	0.00017157	493.98439285146355	42.423	0.7048	42.423	42.277	42.982	0					46	25	2	0	0	0	0.33352	1	9217	9217		0.08335	0.08335	1	238100			18441	3156	10428	10429	23336	23336					0.20806161900986808
KKKYQKRMKIK	11	Unmodified	_KKKYQKRMKIK_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.3237609863281	3	493.649913	1477.92791	0.45201	0.00022313	-0.43405	-0.00021427	0.017952	8.8619E-06	493.6496300251405	41.195	1.7496	41.286	39.965	41.715	0.090252					125	65	3	0	0	0	0.33334	1	8655	8655		0.40827	0.31342	1	2093800			18442	3156	10428	10429	23337	23337					0.20806161900986808
KKKYQKRMKIK	11	Unmodified	_KKKYQKRMKIK_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.79779052734375	3	493.649913	1477.92791	0.30885	0.00015247	0.023614	1.1657E-05	0.33247	0.00016412	493.64990816573714	40.862	1.2313	40.962	39.949	41.18	0.099407					97	44	3	0	0	0	0.33348	1	8625	8625		0.40827	0	1	744300			18443	3156	10428	10429	23338	23338					0.20806161900986808
KKKYQKRMKIK	11	Unmodified	_KKKYQKRMKIK_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	493.649913	1477.92791	0.38074	0.00018795	-0.84803	-0.00041863	-0.46729	-0.00023068	493.64922603108903	41.389	0.48865	41.486	41.093	41.581	0.096622	0.094309	-0.00083993	NaN	2.2527	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2872900			18444	3156	10428	10429							0.20806161900986808
KKLAGQLSSP	10	Unmodified	_KKLAGQLSSP_					0	0	0			REV__nc|ENSG00000147082|Q8WWL7-3|CCNB3	REV__nc|ENSG00000147082|Q8WWL7-3|CCNB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2592163085938	2	514.808574	1027.60259	-0.069098	-3.5572E-05	-1.4643	-0.00075382	-1.5334	-0.0007894	514.8078347889543	12.847	0.29144	12.748	12.578	12.869	-0.099291					7	5	2	0	0	0	0.31745	1	247	247		8.7454	0.58988	1	41298	+		18445	16370	10429	10430	23339	23339					0.0898971836866167
KKLHINWHE	9	Unmodified	_KKLHINWHE_					0	0	0			REV__nc|ENSG00000156687|Q6UXZ4-2|UNC5D	REV__nc|ENSG00000156687|Q6UXZ4-2|UNC5D	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8342895507812	2	602.832914	1203.65128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.792	1	96.862	96.362	97.362	0.070465								0	0	0	0.264	1	25883	25883		1.8442	0.36234	1		+		18446	16755	10430	10431	23340	23340					0.05759631728437853
KKLKAKDFSN	10	Unmodified	_KKLKAKDFSN_					0	0	0			REV__CON__P21752	REV__CON__P21752	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.845703125	2	589.84823	1177.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.04	1	115.02	114.52	115.52	-0.020988								0	0	0	0.38203	1	29846	29846		0.35063	0.043601	1		+	+	18447	13256	10431	10432	23341	23341					0.10017365322801197
KKLKQSMWS	9	Unmodified	_KKLKQSMWS_					0	0	0		nc|ENSG00000121152|Q15003-2|NCAPH;ENSG00000121152|ENST00000240423|NCAPH	nc|ENSG00000121152|Q15003-2|NCAPH	nc|ENSG00000121152|Q15003-2|NCAPH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.3450927734375	2	568.318251	1134.62195	-0.052135	-2.9629E-05	-2.0463	-0.0011629	-2.0984	-0.0011926	568.317171781844	14.541	0.36368	14.541	14.365	14.729	0					22	12	2	0	0	0	0.25988	1	761	761		1.6526	0	1	40151			18448	2990	10432	10433	23342	23342					0.06002351387928684
KKLKVEAPQA	10	Unmodified	_KKLKVEAPQA_					0	0	0		nc|ENSG00000156110|P55263-3|ADK;ENSG00000156110|ENST00000539909|ADK	nc|ENSG00000156110|P55263-3|ADK	nc|ENSG00000156110|P55263-3|ADK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8292846679688	2	556.345323	1110.67609	-0.16123	-8.9698E-05	-0.31584	-0.00017572	-0.47707	-0.00026541	556.3451257908629	13.02	0.37094	12.953	12.763	13.134	-0.067496					29	12	4	0	0	0	0.32054	1	243	243		3.2813	1.4371	1	114900			18449	5219	10433	10434	23343	23343					0.12518266811139256
KKLPNGDK	8	Unmodified	_KKLPNGDK_					0	0	0			REV__nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8	REV__nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2698974609375	2	450.269084	898.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.502	1	82.481	81.981	82.981	-0.020584								0	0	0	0.37183	1	21524	21524		4.756	0	1		+		18450	14453	10434	10435	23344	23344					0.07029491134380805
KKLRKRDIPE	10	Unmodified	_KKLRKRDIPE_					0	0	0			REV__ENSG00000176946|ENST00000407315|THAP4	REV__ENSG00000176946|ENST00000407315|THAP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.25738525390625	3	428.269978	1281.7881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.186	1	88.183	87.683	88.683	-0.0028381								0	0	0	0.3629	1	23272	23272		5.4027	1.2861	1		+		18451	17961	10435	10436	23345	23345					0.15848120888131234
KKLSLKAPL	9	Unmodified	_KKLSLKAPL_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|3.769426837090129|0.2447948664736123|3.94|541.0|28|3|sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|3.769426837090129|0.2447948664736123|3.94|541.0|28|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3058776855469	2	499.342052	996.669552	0.25455	0.00012711	-0.11991	-5.9876E-05	0.13464	6.723E-05	499.34186781635	19.387	0.4035	19.271	19.058	19.461	-0.11592					20	13	2	0	0	0	0.25526	1	2180	2180		7.9102	4.9149	1	52747	+		18452	22847	10436	10437	23346	23346					0.17108373650421527
KKMAQVLHVP	10	Unmodified	_KKMAQVLHVP_					0	0	0		ENST00000590400.1_1_19:11303345-11305238:-|nuORF	ENST00000590400.1_1_19:11303345-11305238:-|nuORF	ENST00000590400.1_1_19:11303345-11305238:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8429565429688	2	575.841894	1149.66923	0.21142	0.00012175	1.1115	0.00064003	1.3229	0.00076178	575.8423428114145	80.387	2.5277	80.387	78.95	81.478	0					278	106	3	0	0	0	0.36786	3	20717	20717;20766;21147		9.3831	9.3831	1	5564600			18453	12169	10437	10438	23347;23348;23349	23347					0.10038630658914371
KKMFKFLTRHT	11	Unmodified	_KKMFKFLTRHT_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.6112060546875	3	479.611346	1435.81221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.448	1	89.539	89.039	90.039	0.090569								0	0	0	0.38186	1	23664	23664		0.50596	0.051438	1		+		18454	14758	10438	10439	23350	23350					0.1117363805012701
KKMNLIQSL	9	Unmodified	_KKMNLIQSL_					0	0	0		ENST00000470105.1_1_9:116790870-116812444:+|nuORF;nc|ENSG00000157657|Q5T7W0-2|ZNF618;nc|ENSG00000157657|Q5T7W0-4|ZNF618;ENSG00000157657|ENST00000374126|ZNF618	ENST00000470105.1_1_9:116790870-116812444:+|nuORF	ENST00000470105.1_1_9:116790870-116812444:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.8319091796875	2	537.820627	1073.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.482	1	65.571	65.071	66.071	0.088882								0	0	0	0.21353	1	16329	16329		18.146	1.0335	1				18455	5320	10439	10440	23351	23351					0.09283235530688216
KKMRDMAIP	9	Unmodified	_KKMRDMAIP_					0	0	0			REV__ENST00000522234.5_1_X:47078210-47085639:+|nuORF	REV__ENST00000522234.5_1_X:47078210-47085639:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2991943359375	2	545.299004	1088.58346	0.32847	0.00017911	0.1585	8.6428E-05	0.48696	0.00026554	545.2990346288293	12.186	0.31573	12.09	11.979	12.295	-0.096606					21	12	3	0	0	0	0.31417	1	54	54		6.7232	1.4925	1	92473	+		18456	21911	10440	10441	23352	23352					0.04270722481737721
KKMRDMAIP	9	Unmodified	_KKMRDMAIP_					0	0	0			REV__ENST00000522234.5_1_X:47078210-47085639:+|nuORF	REV__ENST00000522234.5_1_X:47078210-47085639:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	545.299004	1088.58346	0.32847	0.00017911	0.1585	8.6428E-05	0.48696	0.00026554	545.2990346288293	12.186	0.31573	12.09	11.979	12.295	-0.096606	-0.108	-0.00032369	NaN	6.7232	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92473	+		18457	21911	10440	10441							0.04270722481737721
KKNELKLLPE	10	Unmodified	_KKNELKLLPE_					0	0	0			REV__ENSG00000182150|ENST00000653738|ERCC6L2	REV__ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.369873046875	2	606.371538	1210.72852	0.27382	0.00016604	-3.8453	-0.0023317	-3.5714	-0.0021656	606.3701234387416	112.66	0.14182	112.68	112.57	112.71	0.0131					27	17	3	0	0	0	0.32167	1	29316	29316		0.40072	0	1	38520	+		18458	18178	10441	10442	23353	23353					0.13158805154057518
KKNNYKKQ	8	Unmodified	_KKNNYKKQ_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.80517578125	2	525.806365	1049.59818	0.19401	0.00010201	-1.4182	-0.00074571	-1.2242	-0.0006437	525.8055137254873	12.215	0.45498	12.118	11.954	12.409	-0.096607					22	17	2	0	0	0	0.45942	1	79	79		2.5775	0	1	53692	+		18459	15599	10442	10443	23354	23354					0.07536253945750104
KKNQHTKIH	9	Unmodified	_KKNQHTKIH_					0	0	0			REV__ENST00000465379.1_1_2:174774671-174778005:-|nuORF	REV__ENST00000465379.1_1_2:174774671-174778005:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3299560546875	2	567.330539	1132.64652	0.24926	0.00014142	-0.41895	-0.00023768	-0.16969	-9.6268E-05	567.3301009501672	80.463	2.8102	80.463	78.645	81.455	0					407	117	5	0	0	0	0.31417	1	21102	21102		6.7232	6.7232	1	5542900	+		18460	17740	10443	10444	23355	23355					0.08550747585650242
KKNQHTKIH	9	Unmodified	_KKNQHTKIH_					0	0	0			REV__ENST00000465379.1_1_2:174774671-174778005:-|nuORF	REV__ENST00000465379.1_1_2:174774671-174778005:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3306274414062	2	567.330539	1132.64652	0.28491	0.00016164	-0.80265	-0.00045537	-0.51773	-0.00029372	567.3299030070093	80.442	2.8672	80.416	78.604	81.472	-0.026825					370	113	5	0	0	0	0.31417	1	21102	21102		6.7232	0	1	5958500	+		18461	17740	10443	10444	23356	23356					0.08550747585650242
KKNRNKLRRQH	11	Unmodified	_KKNRNKLRRQH_					0	0	0		ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000273079|ENST00000609686|GRIN2B	ENSG00000273079|ENST00000609686|GRIN2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.79974365234375	3	493.302675	1476.8862	0.33785	0.00016666	0.39641	0.00019555	0.73427	0.00036222	493.3027232031134	91.981	0.45419	91.981	91.866	92.32	0					52	29	2	0	0	0	0.33347	1	24527	24527		0.45452	0.37117	1	190050			18462	8704	10444	10445	23357	23357					0.1668274225667119
KKPLKRGRP	9	Unmodified	_KKPLKRGRP_					0	0	0			REV__ENST00000268261.8_1_16:8891731-8895692:+|nuORF	REV__ENST00000268261.8_1_16:8891731-8895692:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.363525390625	2	540.361642	1078.70873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.721	1	38.721	38.221	39.221	0								0	0	0	0.2575	1	8100	8100		3.9444	1.8846	1		+		18463	19665	10445	10446	23358	23358					0.17252518724649235
KKPNLRPIS	9	Unmodified	_KKPNLRPIS_					0	0	0		ENSG00000174705|ENST00000311601|SH3PXD2B	ENSG00000174705|ENST00000311601|SH3PXD2B	ENSG00000174705|ENST00000311601|SH3PXD2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3613891601562	2	526.832383	1051.65021	0.37002	0.00019494	-0.28056	-0.00014781	0.089459	4.713E-05	526.8321326139245	29.018	0.39484	29.031	28.879	29.274	0.013474					18	14	2	0	0	0	0.25323	1	5104	5104		10.074	2.7847	1	55578			18464	6811	10446	10447	23359	23359					0.12645417359499334
KKPNVFKLK	9	Unmodified	_KKPNVFKLK_					0	0	0		ENST00000518315.5_1_8:18393255-18632402:-|nuORF;nc|ENSG00000156011|Q9NYI0-3|PSD3;PSD3|p.Q887Yfs*33|1|0.05|ENSG00000156011|chr8:18572656-18572657|-/GGAAAAAGTA|frameshift_variant;ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3	ENST00000518315.5_1_8:18393255-18632402:-|nuORF	ENST00000518315.5_1_8:18393255-18632402:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.36083984375	2	551.360776	1100.707	0.46952	0.00025888	-0.14406	-7.9428E-05	0.32547	0.00017945	551.3605707954655	29.758	0.47046	29.77	29.589	30.06	0.012266					38	15	3	0	0	0	0.26612	1	5374	5374		13.906	0.29118	1	279580			18465	5213	10447	10448	23360	23360					0.160674649160228
KKPQSEAFI	9	Unmodified	_KKPQSEAFI_					0	0	0			REV__ENST00000509352.1_1_5:147302326-147302500:+|nuORF	REV__ENST00000509352.1_1_5:147302326-147302500:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2852172851562	2	524.295299	1046.57605	0.4858	0.0002547	0.47775	0.00025048	0.96355	0.00050519	524.2957265346324	42.969	0.62703	42.969	42.706	43.333	0					45	22	3	0	0	0	0.20626	1	9410	9410		22.736	2.2827	1	624440	+		18466	21787	10448	10449	23361	23361					0.05462029477325814
KKPQSEAFI	9	Unmodified	_KKPQSEAFI_					0	0	0			REV__ENST00000509352.1_1_5:147302326-147302500:+|nuORF	REV__ENST00000509352.1_1_5:147302326-147302500:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.28515625	2	524.295299	1046.57605	0.27974	0.00014666	0.73655	0.00038617	1.0163	0.00053283	524.2956828099053	42.74	0.59266	42.832	42.581	43.173	0.091362					53	21	3	0	0	0	0.20626	2	9299	9299;9345		22.736	1.1993	1	662990	+		18467	21787	10448	10449	23362;23363	23362					0.05462029477325814
KKPTNEKLIKR	11	Unmodified	_KKPTNEKLIKR_					0	0	0			REV__NKTR|p.A881Lfs*115|1|0.07|ENSG00000114857|chr3:42638344-42638345|-/CTAAA|frameshift_variant	REV__NKTR|p.A881Lfs*115|1|0.07|ENSG00000114857|chr3:42638344-42638345|-/CTAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2887878417969	3	452.289149	1353.84562	-0.13466	-6.0907E-05	-0.38562	-0.00017441	-0.52028	-0.00023532	452.28891615558797	12.791	0.43064	12.692	12.549	12.98	-0.09929					46	14	5	0	0	0	0.46704	1	234	234		2.4348	0	1	291830	+		18468	23278	10449	10450	23364	23364					0.18284963093674378
KKPTNEKLIKR	11	Unmodified	_KKPTNEKLIKR_					0	0	0			REV__NKTR|p.A881Lfs*115|1|0.07|ENSG00000114857|chr3:42638344-42638345|-/CTAAA|frameshift_variant	REV__NKTR|p.A881Lfs*115|1|0.07|ENSG00000114857|chr3:42638344-42638345|-/CTAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.28875732421875	3	452.289149	1353.84562	-0.24257	-0.00010971	-0.45097	-0.00020397	-0.69354	-0.00031368	452.2888932891783	12.801	0.52173	12.734	12.58	13.102	-0.067495					39	17	4	0	0	0	0.46704	1	236	236		2.4348	0	1	287150	+		18469	23278	10449	10450	23365	23365					0.18284963093674378
KKRATAGK	8	Unmodified	_KKRATAGK_					0	0	0			REV__ENST00000436545.5_1_17:41116178-41116429:-|nuORF	REV__ENST00000436545.5_1_17:41116178-41116429:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.5712585449219	2	430.277244	858.539935	-0.23921	-0.00010293	0.45984	0.00019786	0.22063	9.4932E-05	430.27732425643524	41.886	1.0796	41.886	41.707	42.786	0					75	42	2	0	0	0	0.34408	1	9329	9329		2.3027	0	1	1941800	+		18470	21008	10450	10451	23366	23366					0.1050061709113379
KKRATAGK	8	Unmodified	_KKRATAGK_					0	0	0			REV__ENST00000436545.5_1_17:41116178-41116429:-|nuORF	REV__ENST00000436545.5_1_17:41116178-41116429:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.5711975097656	2	430.277244	858.539935	-0.035559	-1.53E-05	0.43461	0.000187	0.39905	0.0001717	430.27728563552046	41.604	1.0903	41.694	41.429	42.519	0.090248					78	43	2	0	0	0	0.34408	1	9224	9224		2.3027	0	1	3380100	+		18471	21008	10450	10451	23367	23367					0.1050061709113379
KKRATAGK	8	Unmodified	_KKRATAGK_					0	0	0			REV__ENST00000436545.5_1_17:41116178-41116429:-|nuORF	REV__ENST00000436545.5_1_17:41116178-41116429:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	430.277244	858.539935	0.21196	9.12E-05	0.37141	0.00015981	0.58337	0.00025101	430.27723371220975	41.52	0.99614	41.617	41.422	42.418	0.096626	-0.11534	-6.0616E-05	NaN	2.3027	71	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7041300	+		18472	21008	10450	10451							0.1050061709113379
KKREPSTRV	9	Unmodified	_KKREPSTRV_					0	0	0			REV__ENSG00000169851|ENST00000695919|PCDH7	REV__ENSG00000169851|ENST00000695919|PCDH7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.253173828125	2	550.830372	1099.64619	0.079589	4.384E-05	0.6046	0.00033303	0.68419	0.00037687	550.8305172443938	14.562	0.13628	14.496	14.427	14.563	-0.066068					7	4	2	0	0	0	0.26031	1	759	759		3.5965	0	1	24340	+		18473	17543	10451	10452	23368	23368					0.1003532786580763
KKRERHLEFI	10	Unmodified	_KKRERHLEFI_					0	0	0		nc|ENSG00000168216|Q9NUN5-4|LMBRD1;nc|ENSG00000168216|Q9NUN5-2|LMBRD1;nc|ENSG00000168216|Q9NUN5-3|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1	nc|ENSG00000168216|Q9NUN5-4|LMBRD1	nc|ENSG00000168216|Q9NUN5-4|LMBRD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7438659667969	3	452.601727	1354.78335	-0.21669	-9.8073E-05	-0.37065	-0.00016776	-0.58733	-0.00026583	452.60144879171105	27.975	0.30882	27.976	27.879	28.188	0.0004673					19	10	2	0	0	0	0.32068	1	4861	4861		3.5871	2.3722	1	76338			18474	6255	10452	10453	23369	23369					0.12015236745355651
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3099365234375	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.106	1	94.106	93.606	94.606	0								0	0	0	0.37078	1	25087	25087		5.2307	0.47466	1				18475	6864	10453	10454	23370	23370					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3103637695312	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.59	1	101.59	101.09	102.09	0								0	0	0	0.37078	1	27083	27083		5.2307	0.90143	1				18476	6864	10453	10454	23371	23371					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3109741210938	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.45	1	115.45	114.95	115.95	0								0	0	0	0.37724	1	29919	29919		2.3027	0.4585	1				18477	6864	10453	10454	23372	23372					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3119506835938	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.83	1	115.83	115.33	116.33	0								0	0	0	0.37724	1	30006	30006		2.3027	0.24298	1				18478	6864	10453	10454	23373	23373					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3107299804688	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.95	1	115.95	115.45	116.45	0								0	0	0	0.37724	1	30037	30037		2.3027	0.24298	1				18479	6864	10453	10454	23374	23374					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.312255859375	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.4	1	116.4	115.9	116.9	0								0	0	0	0.37078	1	30136	30136		5.2307	2.9279	1				18480	6864	10453	10454	23375	23375					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3113403320312	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.8	1	116.8	116.3	117.3	0								0	0	0	0.37724	1	30226	30226		2.3027	0.24298	1				18481	6864	10453	10454	23376	23376					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3115234375	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.98	1	116.98	116.48	117.48	0								0	0	0	0.37078	1	30269	30269		5.2307	2.9279	1				18482	6864	10453	10454	23377	23377					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3113403320312	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.46	1	118.46	117.96	118.96	0								0	0	0	0.37078	1	30598	30598		5.2307	1.6342	1				18483	6864	10453	10454	23378	23378					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3109130859375	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.49	1	119.49	118.99	119.99	0								0	0	0	0.37078	1	30830	30830		5.2307	3.1709	1				18484	6864	10453	10454	23379	23379					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3119506835938	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.94	1	114.92	114.42	115.42	-0.019096								0	0	0	0.37078	1	29822	29822		5.2307	2.9279	1				18485	6864	10453	10454	23380	23380					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3121337890625	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.12	1	117.09	116.59	117.59	-0.022781								0	0	0	0.37078	1	30324	30324		5.2307	2.9279	1				18486	6864	10453	10454	23381	23381					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.31201171875	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.829	1	92.829	92.329	93.329	0.00046539								0	0	0	0.37078	1	24699	24699		5.2307	0.47466	1				18487	6864	10453	10454	23382	23382					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3115844726562	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.13	1	112.14	111.64	112.64	0.0131								0	0	0	0.37078	1	29189	29189		5.2307	2.9279	1				18488	6864	10453	10454	23383	23383					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3118286132812	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.81	1	112.83	112.33	113.33	0.014824								0	0	0	0.37078	1	29355	29355		5.2307	1.2863	1				18489	6864	10453	10454	23384	23384					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.311767578125	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.25	1	113.26	112.76	113.76	0.014824								0	0	0	0.37078	1	29465	29465		5.2307	3.1709	1				18490	6864	10453	10454	23385	23385					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3112182617188	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.88	1	113.9	113.4	114.4	0.016708								0	0	0	0.37078	1	29624	29624		5.2307	2.9279	1				18491	6864	10453	10454	23386	23386					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3113403320312	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.68	1	116.7	116.2	117.2	0.020988								0	0	0	0.37724	1	30269	30269		2.3027	0.24298	1				18492	6864	10453	10454	23387	23387					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3116455078125	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.07	1	118.09	117.59	118.59	0.023476								0	0	0	0.37078	1	30586	30586		5.2307	3.1709	1				18493	6864	10453	10454	23388	23388					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.31103515625	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.61	1	118.63	118.13	119.13	0.026253								0	0	0	0.37078	1	30709	30709		5.2307	1.6342	1				18494	6864	10453	10454	23389	23389					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3101196289062	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.84	1	118.87	118.37	119.37	0.026253								0	0	0	0.37078	1	30761	30761		5.2307	3.1709	1				18495	6864	10453	10454	23390	23390					0.07586191897121353
KKRHEKHT	8	Unmodified	_KKRHEKHT_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3114013671875	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.78	1	119.81	119.31	120.31	0.027756								0	0	0	0.37078	1	30969	30969		5.2307	2.9279	1				18496	6864	10453	10454	23391	23391					0.07586191897121353
KKRKHERIIDK	11	Unmodified	_KKRKHERIIDK_					0	0	0		NOC3L|p.L309Wfs*16|1|0.31|ENSG00000173145|chr10:94352336-94352336|A/-|frameshift_variant;ENSG00000173145|ENST00000371361|NOC3L	NOC3L|p.L309Wfs*16|1|0.31|ENSG00000173145|chr10:94352336-94352336|A/-|frameshift_variant	NOC3L|p.L309Wfs*16|1|0.31|ENSG00000173145|chr10:94352336-94352336|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.63458251953125	3	484.303681	1449.88921	0.2419	0.00011715	-1.3371	-0.00064759	-1.0952	-0.00053043	484.3030827926883	90.938	0.1922	90.938	90.784	90.976	0					23	15	2	0	0	0	0.33334	1	24121	24121		1.2148	0.76031	1	523690			18497	6694	10454	10455	23392	23392					0.18226572590833712
KKRKHRKRSRD	11	Unmodified	_KKRKHRKRSRD_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.V1315Cfs*8|1|0.35|ENSG00000151150|chr10:60084733-60084734|-/A|frameshift_variant;ANK3|p.E1076Afs*7|1|0.3|ENSG00000151150|chr10:60106005-60106006|TT/-|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3100891113281	3	498.978191	1493.91274	0.29782	0.00014861	0.7212	0.00035986	1.019	0.00050847	498.97862591097396	92.9	0.27782	92.9	92.679	92.957	0					24	21	2	0	0	0	0.33351	1	24719	24719		0.094841	0	1	116470			18498	4941	10455	10456	23393	23393					0.1855443114800437
KKRKHRKRSRD	11	Unmodified	_KKRKHRKRSRD_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.V1315Cfs*8|1|0.35|ENSG00000151150|chr10:60084733-60084734|-/A|frameshift_variant;ANK3|p.E1076Afs*7|1|0.3|ENSG00000151150|chr10:60106005-60106006|TT/-|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3099365234375	3	498.978191	1493.91274	0.35905	0.00017916	0.70298	0.00035077	1.062	0.00052993	498.97852995105626	92.255	0.36511	92.344	92.214	92.579	0.089195					39	26	2	0	0	0	0.33339	1	24509	24509		1.0136	0.60531	1	210190			18499	4941	10455	10456	23394	23394					0.1855443114800437
KKRKKKRKDYQ	11	Unmodified	_KKRKKKRKDYQ_					0	0	0		ENSG00000118507|ENST00000431975|AKAP7	ENSG00000118507|ENST00000431975|AKAP7	ENSG00000118507|ENST00000431975|AKAP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.65093994140625	3	502.651081	1504.93141	0.1142	5.7403E-05	-0.078259	-3.9337E-05	0.035942	1.8066E-05	502.65103890165517	104.43	0.43871	104.43	104.38	104.82	0.0018463					105	63	2	0	0	0	0.48486	1	27733	27733		0.094841	0.011491	1	869160			18500	2829	10456	10457	23395	23395					0.19914547999223942
KKRLDLSKMGI	11	Unmodified	_KKRLDLSKMGI_					0	0	0		nc|ENSG00000165383|Q8N456-2|LRRC18;ENSG00000165383|ENST00000374160|LRRC18	nc|ENSG00000165383|Q8N456-2|LRRC18	nc|ENSG00000165383|Q8N456-2|LRRC18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8866271972656	3	430.263835	1287.76968	-0.34101	-0.00014672	0.2979	0.00012818	-0.043109	-1.8548E-05	430.26385042765895	15.399	0.44596	15.335	15.041	15.487	-0.064413					20	14	2	0	0	0	0.33296	1	1003	1003		2.6312	0.88896	1	49732			18501	5955	10457	10458	23396	23396					0.13730242921928948
KKRLHPAP	8	Unmodified	_KKRLHPAP_					0	0	0			REV__nc|ENSG00000078487|Q9H0M4-5|ZCWPW1	REV__nc|ENSG00000078487|Q9H0M4-5|ZCWPW1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2607421875	2	473.800886	945.587219	0.099914	4.7339E-05	-1.8732	-0.00088753	-1.7733	-0.00084019	473.7999113090821	17.23	0.41443	17.23	16.981	17.396	0					23	14	2	0	0	0	0.34319	1	1511	1511		5.7604	2.8712	1	62405	+		18502	22900	10458	10459	23397	23397					0.11224896362125492
KKRLKNYYKK	10	Unmodified	_KKRLKNYYKK_					0	0	0		ENSG00000104626|ENST00000250263|ERI1	ENSG00000104626|ENST00000250263|ERI1	ENSG00000104626|ENST00000250263|ERI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.24053955078125	3	456.95399	1367.84014	0.19697	9.0007E-05	-1.9689	-0.00089972	-1.772	-0.00080971	456.9543521027409	23.591	0.28717	23.552	23.364	23.651	-0.038927					15	9	2	0	0	0	0.32165	1	3506	3506		0.69767	0.55777	1	18846			18503	1902	10459	10460	23398	23398					0.17093284301859057
KKRRRGYL	8	Unmodified	_KKRRRGYL_					0	0	0			REV__nc|ENSG00000160201|Q01081-4|U2AF1	REV__nc|ENSG00000160201|Q01081-4|U2AF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8187255859375	2	538.843616	1075.67268	0.086378	4.6544E-05	-0.63347	-0.00034134	-0.54709	-0.00029479	538.8434086473798	13.213	0.26911	13.114	12.98	13.249	-0.099291					14	8	2	0	0	0	0.34437	1	352	352		0.69038	0	1	47904	+		18504	16886	10460	10461	23399	23399					0.13787061547805024
KKRRRSDQ	8	Unmodified	_KKRRRSDQ_					0	0	0			REV__ENST00000442447.5_1_20:34319864-34322136:-|nuORF	REV__ENST00000442447.5_1_20:34319864-34322136:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.299072265625	2	537.317963	1072.62137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.653	1	13.653	13.153	14.153	0								0	0	0	0.37078	1	489	489		5.2307	0	1		+		18505	16190	10461	10462	23400	23400					0.08796692783084836
KKSASSKRL	9	Unmodified	_KKSASSKRL_					0	0	0			REV__ENSG00000120029|ENST00000370033|ARMH3	REV__ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.8145446777344	2	502.81419	1003.61383	0.5111	0.00025699	0.10909	5.4854E-05	0.62019	0.00031184	502.8141498499233	87.019	1.5423	87.019	86.251	87.794	0					241	66	6	0	0	0	0.26612	1	22938	22938		13.906	13.906	1	9027700	+		18506	15072	10462	10463	23401	23401					0.11216540462805824
KKSASSKRL	9	Unmodified	_KKSASSKRL_					0	0	0			REV__ENSG00000120029|ENST00000370033|ARMH3	REV__ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.8144226074219	2	502.81419	1003.61383	0.38689	0.00019454	0.17518	8.8084E-05	0.56208	0.00028262	502.8142177658488	86.973	1.5499	87.06	86.464	88.014	0.08709					268	72	6	0	0	0	0.26612	1	22912	22912		13.906	13.906	1	9178900	+		18507	15072	10462	10463	23402	23402					0.11216540462805824
KKSASSKRL	9	Unmodified	_KKSASSKRL_					0	0	0			REV__ENSG00000120029|ENST00000370033|ARMH3	REV__ENSG00000120029|ENST00000370033|ARMH3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	502.81419	1003.61383	0.5111	0.00025699	0.10909	5.4854E-05	0.62019	0.00031184	502.8141498499233	87.019	1.5423	87.019	86.251	87.794	0	0.0025907	-5.2466E-05	NaN	13.906	241	66	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9027700	+		18508	15072	10462	10463							0.11216540462805824
KKSASSKRL	9	Unmodified	_KKSASSKRL_					0	0	0			REV__ENSG00000120029|ENST00000370033|ARMH3	REV__ENSG00000120029|ENST00000370033|ARMH3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	502.81419	1003.61383	0.38689	0.00019454	0.17518	8.8084E-05	0.56208	0.00028262	502.8142177658488	86.973	1.5499	87.06	86.464	88.014	0.08709	0.044026	1.3995E-05	NaN	13.906	268	72	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9178900	+		18509	15072	10462	10463							0.11216540462805824
KKSASSKRL	9	Unmodified	_KKSASSKRL_					0	0	0			REV__ENSG00000120029|ENST00000370033|ARMH3	REV__ENSG00000120029|ENST00000370033|ARMH3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	502.81419	1003.61383	0.46304	0.00023282	0.16918	8.5066E-05	0.63222	0.00031789	502.81420768735785	86.975	1.9913	86.97	86.482	88.473	-0.0056229	-0.046617	7.9579E-06	NaN	13.906	294	94	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10342000	+		18510	15072	10462	10463							0.11216540462805824
KKSETYAPLF	10	Unmodified	_KKSETYAPLF_					0	0	0		nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant;ENST00000529428.5_1_16:30280378-30291878:-|nuORF;ENST00000568855.1_1_16:70265056-70269235:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF	nc|ENSG00000157106|Q96Q15-3|SMG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.3064575195312	2	592.321514	1182.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.859	1	85.859	85.359	86.359	0								0	0	0	0.35216	1	22572	22572		13.906	4.5229	1				18511	5279;9306	10463	10464	23403	23403					0.04446567820264136
KKSETYAPLF	10	Unmodified	_KKSETYAPLF_					0	0	0		nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant;ENST00000529428.5_1_16:30280378-30291878:-|nuORF;ENST00000568855.1_1_16:70265056-70269235:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF	nc|ENSG00000157106|Q96Q15-3|SMG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.305419921875	2	592.321514	1182.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.462	1	85.449	84.949	85.949	-0.01284								0	0	0	0.3629	1	22436	22436		9.3831	0.63772	1				18512	5279;9306	10463	10464	23404	23404					0.04446567820264136
KKSGGHYTYI	10	Unmodified	_KKSGGHYTYI_					0	0	0		ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3668823242188	2	577.303655	1152.59276	0.18769	0.00010835	-3.9339	-0.0022711	-3.7463	-0.0021627	577.3011992164621	92.376	0.48286	92.376	92.056	92.538	0					55	37	2	0	0	0	0.31629	1	24580	24580		10.074	3.3508	1	125530			18513	4932	10464	10465	23405	23405					0.022565303632973155
KKSKTLQEF	9	Unmodified	_KKSKTLQEF_					0	0	0		nc|ENSG00000155307|Q9NSI8-2|SAMSN1;ENSG00000155307|ENST00000400566|SAMSN1;nc|ENSG00000155307|Q9NSI8-3|SAMSN1	nc|ENSG00000155307|Q9NSI8-2|SAMSN1	nc|ENSG00000155307|Q9NSI8-2|SAMSN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.8056030273438	2	554.821681	1107.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.376	1	54.439	53.939	54.939	0.063202								0	0	0	0.22377	1	12909	12909		14.838	4.0388	1				18514	5168	10465	10466	23406	23406					0.07929987540137517
KKSLSARNA	9	Unmodified	_KKSLSARNA_					0	0	0		nc|ENSG00000105784|Q96NL0-4|RUNDC3B;ENSG00000105784|ENST00000394654|RUNDC3B;nc|ENSG00000105784|Q96NL0|RUNDC3B;RUNDC3B|p.C52Wfs*3|1|0.37|ENSG00000105784|chr7:87650853-87650854|-/G|frameshift_variant	nc|ENSG00000105784|Q96NL0-4|RUNDC3B	nc|ENSG00000105784|Q96NL0-4|RUNDC3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.790771484375	2	487.790715	973.566878	0.35475	0.00017304	0.41003	0.00020001	0.76478	0.00037305	487.79074011191256	71.976	1.8152	71.976	71.375	73.191	0					145	65	4	0	0	0	0.28674	1	18303	18303		10.824	2.9138	1	999710			18515	2024	10466	10467	23407	23407					0.0790368091164737
KKSLSARNA	9	Unmodified	_KKSLSARNA_					0	0	0		nc|ENSG00000105784|Q96NL0-4|RUNDC3B;ENSG00000105784|ENST00000394654|RUNDC3B;nc|ENSG00000105784|Q96NL0|RUNDC3B;RUNDC3B|p.C52Wfs*3|1|0.37|ENSG00000105784|chr7:87650853-87650854|-/G|frameshift_variant	nc|ENSG00000105784|Q96NL0-4|RUNDC3B	nc|ENSG00000105784|Q96NL0-4|RUNDC3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7908935546875	2	487.790715	973.566878	0.36554	0.00017831	0.46078	0.00022476	0.82632	0.00040307	487.7907373002169	71.909	1.9917	71.966	71.238	73.23	0.056572					162	72	3	0	0	0	0.28674	1	18276	18276		10.824	2.2306	1	950180			18516	2024	10466	10467	23408	23408					0.0790368091164737
KKSPMKMKIS	10	Unmodified	_KKSPMKMKIS_					0	0	0			REV__nc|ENSG00000204991|Q8WWL2-4|SPIRE2	REV__nc|ENSG00000204991|Q8WWL2-4|SPIRE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3431396484375	2	589.343412	1176.67227	0.2195	0.00012936	-0.52797	-0.00031116	-0.30847	-0.0001818	589.3430264779236	95.875	2.0865	95.953	95.095	97.182	0.077415					293	196	2	0	0	0	0.40262	2	25377	25377;25419		2.9952	2.9952	1	359070	+		18517	18976	10467	10468	23409;23410	23409					0.09100137721407009
KKSQKREA	8	Unmodified	_KKSQKREA_					0	0	0		ENST00000554744.1_1_14:81964730-81972475:-|nuORF;nc|ENSG00000071537|Q9UBV2-2|SEL1L;ENSG00000071537|ENST00000336735|SEL1L	ENST00000554744.1_1_14:81964730-81972475:-|nuORF	ENST00000554744.1_1_14:81964730-81972475:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7908935546875	2	487.790715	973.566878	0.35475	0.00017304	0.41003	0.00020001	0.76478	0.00037305	487.79074011191256	71.976	1.8152	71.976	71.375	73.191	0					145	65	4	0	0	0	0.4354	2	18355	18255;18355		10.824	0	1	999710			18518	958	10468	10469	23411;23412	23412					0.07903680911658739
KKSQKREA	8	Unmodified	_KKSQKREA_					0	0	0		ENST00000554744.1_1_14:81964730-81972475:-|nuORF;nc|ENSG00000071537|Q9UBV2-2|SEL1L;ENSG00000071537|ENST00000336735|SEL1L	ENST00000554744.1_1_14:81964730-81972475:-|nuORF	ENST00000554744.1_1_14:81964730-81972475:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7908630371094	2	487.790715	973.566878	0.36554	0.00017831	0.46078	0.00022476	0.82632	0.00040307	487.7907373002169	71.909	1.9917	71.966	71.238	73.23	0.056572					162	72	3	0	0	0	0.44389	2	18324	18225;18324		7.9102	0	1	950180			18519	958	10468	10469	23413;23414	23414					0.07903680911658739
KKSQKREA	8	Unmodified	_KKSQKREA_					0	0	0		ENST00000554744.1_1_14:81964730-81972475:-|nuORF;nc|ENSG00000071537|Q9UBV2-2|SEL1L;ENSG00000071537|ENST00000336735|SEL1L	ENST00000554744.1_1_14:81964730-81972475:-|nuORF	ENST00000554744.1_1_14:81964730-81972475:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7908020019531	2	487.790715	973.566878	0.41302	0.00020147	0.40261	0.00019639	0.81562	0.00039785	487.7906948525249	72.031	1.8157	72.004	71.368	73.183	-0.027275					152	64	3	0	0	0	0.44389	2	18288	18288;18340		7.9102	0	1	1149600			18520	958	10468	10469	23415;23416	23415					0.07903680911658739
KKSRSSLKQ	9	Unmodified	_KKSRSSLKQ_					0	0	0		ENST00000361828.6_1_3:193413749-193413833:+|nuORF	ENST00000361828.6_1_3:193413749-193413833:+|nuORF	ENST00000361828.6_1_3:193413749-193413833:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3250732421875	2	531.324922	1060.63529	0.68437	0.00036362	0.047899	2.545E-05	0.73226	0.00038907	531.3248116207006	86.241	0.92606	86.241	85.931	86.857	0					102	36	4	0	0	0	0.26612	1	22675	22675		13.906	13.906	1	1547100			18521	9699	10469	10470	23417	23417					0.10739925491520808
KKSRSSLKQ	9	Unmodified	_KKSRSSLKQ_					0	0	0		ENST00000361828.6_1_3:193413749-193413833:+|nuORF	ENST00000361828.6_1_3:193413749-193413833:+|nuORF	ENST00000361828.6_1_3:193413749-193413833:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3250732421875	2	531.324922	1060.63529	0.47429	0.000252	0.2662	0.00014144	0.74049	0.00039344	531.3249179068306	86.158	1.0252	86.242	85.726	86.751	0.084251					106	39	5	0	0	0	0.25989	1	22643	22643		14.838	14.838	1	1624300			18522	9699	10469	10470	23418	23418					0.10739925491520808
KKSRSSLKQ	9	Unmodified	_KKSRSSLKQ_					0	0	0		ENST00000361828.6_1_3:193413749-193413833:+|nuORF	ENST00000361828.6_1_3:193413749-193413833:+|nuORF	ENST00000361828.6_1_3:193413749-193413833:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3250732421875	2	531.324922	1060.63529	0.65022	0.00034548	0.051574	2.7403E-05	0.70179	0.00037288	531.324869362501	86.187	0.84636	86.178	85.873	86.719	-0.0090027					95	32	4	0	0	0	0.25989	1	22673	22673		14.838	14.838	1	1500800			18523	9699	10469	10470	23419	23419					0.10739925491520808
KKSRSSLKQ	9	Unmodified	_KKSRSSLKQ_					0	0	0		ENST00000361828.6_1_3:193413749-193413833:+|nuORF	ENST00000361828.6_1_3:193413749-193413833:+|nuORF	ENST00000361828.6_1_3:193413749-193413833:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.324922	1060.63529	0.68437	0.00036362	0.047899	2.545E-05	0.73226	0.00038907	531.3248116207006	86.241	0.92606	86.241	85.931	86.857	0	0.020889	-6.7286E-05	NaN	14.838	102	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1547100			18524	9699	10469	10470							0.10739925491520808
KKSRSSLKQ	9	Unmodified	_KKSRSSLKQ_					0	0	0		ENST00000361828.6_1_3:193413749-193413833:+|nuORF	ENST00000361828.6_1_3:193413749-193413833:+|nuORF	ENST00000361828.6_1_3:193413749-193413833:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	531.324922	1060.63529	0.47429	0.000252	0.2662	0.00014144	0.74049	0.00039344	531.3249179068306	86.158	1.0252	86.242	85.726	86.751	0.084251	0.021658	0.0001647	NaN	14.838	106	39	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1624300			18525	9699	10469	10470							0.10739925491520808
KKSWLRLLLLS	11	Unmodified	_KKSWLRLLLLS_					0	0	0		ENST00000373696.7_1_X:70823497-70824427:+|nuORF	ENST00000373696.7_1_X:70823497-70824427:+|nuORF	ENST00000373696.7_1_X:70823497-70824427:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.93328857421875	3	452.962374	1355.86529	0.26704	0.00012096	1.227	0.00055578	1.494	0.00067674	453.2972997821759	33.294	0.41387	33.349	33.199	33.613	0.055309					23	14	2	0	0	0	0.3333	1	6491	6491		1.3296	0.87513	1	187970			18526	9876	10470	10471	23420	23420					0.20159339104452556
KKTDVGVRE	9	Unmodified	_KKTDVGVRE_					0	0	0		ENSG00000163141|ENST00000368931|BNIPL	ENSG00000163141|ENST00000368931|BNIPL	ENSG00000163141|ENST00000368931|BNIPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2958374023438	2	516.29583	1030.57711	0.0076549	3.9522E-06	1.4856	0.00076703	1.4933	0.00077098	516.2965427250848	13.185	0.39937	13.185	13.058	13.457	0					29	13	3	0	0	0	0.32638	1	321	321		4.897	0.56777	1	214960			18527	5653	10471	10472	23421	23421					0.06304243846238933
KKTEQLNF	8	Unmodified	_KKTEQLNF_					0	0	0			REV__ENST00000440835.6_1_12:71031939-71032017:-|nuORF	REV__ENST00000440835.6_1_12:71031939-71032017:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2807312011719	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.03	1	104.03	103.53	104.53	-0.0011139								0	0	0	0.36486	1	27657	27657		7.9102	0	1		+		18528	21047	10472	10473	23422	23422					0.04173456443231771
KKTKIEEARE	10	Unmodified	_KKTKIEEARE_					0	0	0		nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2276611328125	3	411.238343	1230.6932	-0.19239	-7.9117E-05	0.72306	0.00029735	0.53067	0.00021823	411.23856014343596	23.752	0.71407	23.752	23.48	24.194	0					64	24	4	0	0	0	0.38952	1	3599	3599		5.4027	0.99656	1	411240			18529	466	10473	10474	23423	23423					0.08708142626255722
KKTLCLKKC	9	Unmodified	_KKTLCLKKC_					0	0	0		ENST00000556380.3_1_14:35480803-35482576:+|nuORF	ENST00000556380.3_1_14:35480803-35482576:+|nuORF	ENST00000556380.3_1_14:35480803-35482576:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.30517578125	2	532.819573	1063.62459	0.40394	0.00021523	0.86972	0.00046341	1.2737	0.00067863	532.8200819744056	17.627	0.17754	17.567	17.472	17.65	-0.060429					9	5	2	0	0	0	0.26188	1	1678	1678		1.6526	0.85899	1	20931			18530	11855	10474	10475	23424	23424					0.09532483521229551
KKTRKKKKTL	10	Unmodified	_KKTRKKKKTL_					0	0	0			REV__L1PBa_dup1914|chr16:20454552-20458311:+|1.873729371871474|0.2397336971051269|2.97|524.0|105|3|sense	REV__L1PBa_dup1914|chr16:20454552-20458311:+|1.873729371871474|0.2397336971051269|2.97|524.0|105|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2835388183594	3	420.294235	1257.86087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.285	1	83.265	82.765	83.765	-0.020584								0	0	0	0.38065	1	21767	21767		1.9064	1.1298	1		+		18531	22831	10475	10476	23425	23425					0.24225874681542336
KKTSIYHL	8	Unmodified	_KKTSIYHL_					0	0	0		nc|ENSG00000250878|A6NDL7|METTL21EP	nc|ENSG00000250878|A6NDL7|METTL21EP	nc|ENSG00000250878|A6NDL7|METTL21EP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2915344238281	2	495.292559	988.570566	0.21295	0.00010547	-1.3649	-0.00067601	-1.1519	-0.00057054	495.2913983579646	16.885	0.27249	16.771	16.667	16.94	-0.11434					13	9	2	0	0	0	0.34353	1	1486	1486		4.756	0	1	99233			18532	12975	10476	10477	23426	23426					0.07582350685493111
KKVEQWKEKFF	11	Unmodified	_KKVEQWKEKFF_					0	0	0		ENSG00000171456|ENST00000375687|ASXL1;nc|ENSG00000171456|Q8IXJ9-2|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2716369628906	3	499.613522	1495.81874	0.5313	0.00026544	-0.87624	-0.00043778	-0.34494	-0.00017234	499.6129299415322	48.567	0.36744	48.567	48.298	48.665	0					26	12	3	0	0	0	0.3331	1	11067	11067		2.2527	0	1	575720			18533	6544	10477	10478	23427	23427					0.09065854482469149
KKVFAPLFSP	10	Unmodified	_KKVFAPLFSP_					0	0	0			REV__nc|ENSG00000123607|Q7Z4L5-2|TTC21B	REV__nc|ENSG00000123607|Q7Z4L5-2|TTC21B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3297119140625	2	567.33951	1132.66447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.059	1	80.03	79.53	80.53	-0.028931								0	0	0	0.37044	1	20774	20774		6.2058	2.2614	1		+		18534	15197	10478	10479	23428	23428					0.10344069787788612
KKVFLASGMKL	11	Unmodified	_KKVFLASGMKL_					0	0	0			REV__nc|ENSG00000170054|Q86WD7-4|SERPINA9	REV__nc|ENSG00000170054|Q86WD7-4|SERPINA9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.3558959960938	2	611.373026	1220.7315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.882	1	82.882	82.382	83.382	0								0	0	0	0.37501	1	21658	21658		2.7352	0.45242	1		+		18535	17560	10479	10480	23429	23429					0.1299635700725048
KKVHLYGLIMR	11	Unmodified	_KKVHLYGLIMR_					0	0	0			REV__ZNF180|p.D145Mfs*57|1|0.3|ENSG00000167384|chr19:44478048-44478048|C/-|frameshift_variant	REV__ZNF180|p.D145Mfs*57|1|0.3|ENSG00000167384|chr19:44478048-44478048|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.5988464355469	3	453.276075	1356.8064	-0.26925	-0.00012205	1.1396	0.00051655	0.87033	0.0003945	453.2765706608929	12.473	0.23811	12.405	12.281	12.519	-0.06806					16	7	3	0	0	0	0.33346	1	151	151		0.50596	0	1	69759	+		18536	23357	10480	10481	23430	23430					0.1422653953848112
KKVLAKRRPD	10	Unmodified	_KKVLAKRRPD_					0	0	0			REV__NEFM|p.E534Ffs*188|1|0.08|ENSG00000104722|chr8:24917453-24917454|-/ATTCCTCT|frameshift_variant	REV__NEFM|p.E534Ffs*188|1|0.08|ENSG00000104722|chr8:24917453-24917454|-/ATTCCTCT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.26422119140625	3	404.262935	1209.76697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.47	1	116.45	115.95	116.95	-0.022781								0	0	0	0.38198	1	30173	30173		0.62683	0.12087	1		+		18537	23275	10481	10482	23431	23431					0.1704815557927759
KKVPLLLLVLI	11	Unmodified	_KKVPLLLLVLI_					0	0	0			REV__ENSG00000143797|ENST00000305997|MBOAT2	REV__ENSG00000143797|ENST00000305997|MBOAT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.95703125	2	624.95451	1247.89447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.12	1	112.12	111.62	112.62	0								0	0	0	0.3823	1	29153	29153		0	0	1		+		18538	16200	10482	10483	23432	23432					0.28043483400756486
KKVRAPPFN	9	Unmodified	_KKVRAPPFN_					0	0	0		ENST00000483154.5_1_1:173684499-173684601:+|nuORF	ENST00000483154.5_1_1:173684499-173684601:+|nuORF	ENST00000483154.5_1_1:173684499-173684601:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8134765625	2	528.819276	1055.624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.496	1	79.467	78.967	79.967	-0.028931								0	0	0	0.24715	1	20601	20601		7.2892	0	1				18539	11058	10483	10484	23433	23433					0.09841148188024818
KKYLELTL	8	Unmodified	_KKYLELTL_					0	0	0			REV__ENSG00000104879|ENST00000221476|CKM	REV__ENSG00000104879|ENST00000221476|CKM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.8445129394531	2	504.310418	1006.60628	0.29261	0.00014757	-0.108	-5.4464E-05	0.18462	9.3104E-05	504.3102982633234	74.595	0.51197	74.647	74.353	74.865	0.052361					22	17	2	0	0	0	0.29855	1	19129	19129		32.117	3.6301	1	255170	+		18540	14425	10484	10485	23434	23434					0.10324388142510088
KKYWKTKQVF	10	Unmodified	_KKYWKTKQVF_					0	0	0		ENST00000484561.5_1_2:203690406-203693732:-|nuORF;nc|ENSG00000163596|Q8NDH6-2|ICA1L;ENSG00000163596|ENST00000358299|ICA1L	ENST00000484561.5_1_2:203690406-203693732:-|nuORF	ENST00000484561.5_1_2:203690406-203693732:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.5988464355469	3	452.599324	1354.77614	-0.26097	-0.00011812	-1.1389	-0.00051548	-1.3999	-0.0006336	452.598933346169	12.498	0.35693	12.43	12.313	12.67	-0.06806					26	10	4	0	0	0	0.4155	1	151	151		0.62683	0	1	126720			18541	5706	10485	10486	23435	23435					0.11294504144916573
KLAFLNVLF	9	Unmodified	_KLAFLNVLF_					0	0	0		ENST00000366595.7_1_1:236140589-236140733:-|nuORF	ENST00000366595.7_1_1:236140589-236140733:-|nuORF	ENST00000366595.7_1_1:236140589-236140733:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2952880859375	2	532.828778	1063.643	0.41889	0.0002232	-0.18206	-9.7007E-05	0.23683	0.00012619	532.8286193403429	69.811	0.45808	69.789	69.591	70.049	-0.022087					26	16	2	0	0	0	0.22596	1	17636	17636		21.747	0	1	139170			18542	9707	10486	10487	23436	23436					0.1137268475908968
KLAILQEAF	9	Unmodified	_KLAILQEAF_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7899169921875	2	516.808042	1031.60153	0.71874	0.00037145	-2.0398	-0.0010542	-1.3211	-0.00068276	517.3081555887549	45.937	0.49671	45.937	45.558	46.055	0					32	17	3	0	0	0	0.24993	1	10209	10209		13.042	0.80181	1	381150	+		18543	14730	10487	10488	23437	23437					0.08699503999741864
KLAILQEAF	9	Unmodified	_KLAILQEAF_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	516.808042	1031.60153	0.39481	0.00020404	0.060261	3.1143E-05	0.45507	0.00023518	516.8079407460292	45.531	0.21415	45.596	45.461	45.675	0.065048	-0.17058	0.0004757	NaN	13.042	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123800	+		18544	14730	10487	10488							0.08699503999741864
KLAPGAGKSA	10	Unmodified	_KLAPGAGKSA_					0	0	0			REV__ENST00000253669.9_1_19:17186251-17186383:-|nuORF	REV__ENST00000253669.9_1_19:17186251-17186383:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2694396972656	2	450.269084	898.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.382	1	79.353	78.853	79.853	-0.028931								0	0	0	0.37807	1	20566	20566		2.9952	0	1		+		18545	19539	10488	10489	23438	23438					0.07029491134380805
KLAPTNFK	8	Unmodified	_KLAPTNFK_					0	0	0			REV__ENST00000487404.5_1_1:33241584-33248146:-|nuORF	REV__ENST00000487404.5_1_1:33241584-33248146:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7742004394531	2	459.774003	917.533452	0.18406	8.4627E-05	0.66138	0.00030409	0.84544	0.00038871	459.77429060239837	16.805	0.92177	16.743	16.205	17.127	-0.062534					55	32	2	0	0	0	0.35947	1	1428	1428		24.021	3.5669	1	164560	+		18546	15692	10489	10490	23439	23439					0.07138679139757187
KLAQNRQRQ	9	Unmodified	_KLAQNRQRQ_					0	0	0		ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.8328857421875	2	571.33107	1140.64759	0.17783	0.0001016	0.38731	0.00022128	0.56514	0.00032288	571.3313645761497	92.465	0.62683	92.465	92.218	92.845	0					67	47	2	0	0	0	0.34681	1	24609	24609		1.8442	0.19162	1	122810			18547	2595	10490	10491	23440	23440					0.08288961954553997
KLAQNRQRQ	9	Unmodified	_KLAQNRQRQ_					0	0	0		ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3330078125	2	571.33107	1140.64759	0.40576	0.00023182	0.063927	3.6524E-05	0.46968	0.00026834	571.3310581951066	92.467	0.66455	92.467	92.242	92.907	0.00046539					71	46	2	0	0	0	0.34681	1	24622	24622		1.8442	0.36234	1	219400			18548	2595	10490	10491	23441	23441					0.08288961954553997
KLCDKMALF	9	Unmodified	_KLCDKMALF_					0	0	0		ENSG00000134030|ENST00000256413|CTIF;nc|ENSG00000134030|O43310-2|CTIF;ENST00000587860.1_1_18:46287547-46385927:+|nuORF	ENSG00000134030|ENST00000256413|CTIF	ENSG00000134030|ENST00000256413|CTIF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2916259765625	2	534.782656	1067.55076	0.58567	0.00031321	-0.10574	-5.6547E-05	0.47993	0.00025666	535.2855108514675	90.187	0.17496	90.187	90.131	90.306	0.0003891					21	11	3	0	0	0	0.25526	1	23898	23898		7.9102	0	1	118960			18549	3749	10491	10492	23442	23442					0.0196851535888527
KLCGDDHF	8	Unmodified	_KLCGDDHF_					0	0	0		ENSG00000099994|ENST00000358321|SUSD2;ENST00000463101.1_1_22:24583504-24584401:+|nuORF	ENSG00000099994|ENST00000358321|SUSD2	ENSG00000099994|ENST00000358321|SUSD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7699279785156	2	467.708002	933.401452	-0.2109	-9.8641E-05	4.0349	0.0018871	3.824	0.0017885	467.70960444868416	13.02	0.46144	12.953	12.64	13.102	-0.067496					24	15	2	0	0	0	0.34337	1	313	313		5.2307	0.47466	1	26764			18550	1511	10492	10493	23443	23443					-0.06791293939511434
KLCGPNVTDF	10	Unmodified	_KLCGPNVTDF_					0	0	0		ENSG00000128342|ENST00000249075|LIF	ENSG00000128342|ENST00000249075|LIF	ENSG00000128342|ENST00000249075|LIF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.7656860351562	2	547.270967	1092.52738	0.17753	9.7156E-05	-0.64957	-0.00035549	-0.47204	-0.00025833	547.270722236003	75.725	0.98465	75.725	75.235	76.22	0					114	35	4	0	0	0	0.2593	1	19457	19457		25.399	1.3787	1	1206900			18551	3366	10493	10494	23444	23444					-0.015182071540948527
KLCHPEELV	9	Unmodified	_KLCHPEELV_					0	0	0		ENSG00000108342|ENST00000394149|CSF3;nc|ENSG00000108342|P09919|CSF3	ENSG00000108342|ENST00000394149|CSF3	ENSG00000108342|ENST00000394149|CSF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.754638671875	2	534.281334	1066.54812	0.30656	0.00016379	-0.12336	-6.5908E-05	0.1832	9.788E-05	534.2811181523672	19.215	0.54782	19.16	18.876	19.423	-0.055693					39	18	3	0	0	0	0.25706	1	2107	2107		6.7232	0.96273	1	146180			18552	2175	10494	10495	23445	23445					0.017503832255670204
KLCMWISI	8	Unmodified	_KLCMWISI_					0	0	0			REV__STOML3|p.L106Sfs*6|1|0.14|ENSG00000133115|chr13:38970385-38970385|G/-|frameshift_variant	REV__STOML3|p.L106Sfs*6|1|0.14|ENSG00000133115|chr13:38970385-38970385|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.80810546875	2	497.266642	992.51873	0.44559	0.00022158	-1.4687	-0.00073034	-1.0231	-0.00050876	497.26554706594874	71.801	0.40826	71.774	71.63	72.038	-0.027275					20	14	2	0	0	0	0.33293	1	18227	18227		20.454	0	1	101950	+		18553	15608	10495	10496	23446	23446					0.02217147675742126
KLCMWISI	8	Unmodified	_KLCMWISI_					0	0	0			REV__STOML3|p.L106Sfs*6|1|0.14|ENSG00000133115|chr13:38970385-38970385|G/-|frameshift_variant	REV__STOML3|p.L106Sfs*6|1|0.14|ENSG00000133115|chr13:38970385-38970385|G/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.266642	992.51873	0.42084	0.00020927	-1.5562	-0.00077383	-1.1353	-0.00056456	497.26562403428835	71.733	0.34847	71.789	71.601	71.949	0.056572	0.0076811	-5.8107E-05	NaN	20.454	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102860	+		18554	15608	10495	10496							0.02217147675742126
KLDMEILEQLK	11	Unmodified	_KLDMEILEQLK_					0	0	0		nc|ENSG00000095596|O43174-2|CYP26A1;ENSG00000095596|ENST00000224356|CYP26A1	nc|ENSG00000095596|O43174-2|CYP26A1	nc|ENSG00000095596|O43174-2|CYP26A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2571716308594	3	453.923256	1358.74794	0.28863	0.00013102	-0.058705	-2.6647E-05	0.22993	0.00010437	453.92339412702427	29.834	1.3191	29.834	29.355	30.674	0					149	46	5	0	0	0	0.39698	1	5454	5454		11.631	3.3449	1	2499900			18555	1453	10496	10497	23447	23447					0.08291393382683054
KLDTVSLPK	9	Unmodified	_KLDTVSLPK_					0	0	0			REV__nc|ENSG00000167634|Q8WX94|NLRP7	REV__nc|ENSG00000167634|Q8WX94|NLRP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8187561035156	2	500.8055	999.596446	0.30582	0.00015316	0.13409	6.7155E-05	0.43992	0.00022031	500.8055012574134	42.371	0.80324	42.462	42.124	42.928	0.091362					55	28	3	0	0	0	0.20626	1	9334	9334		22.736	1.1461	1	294780	+		18556	17397	10497	10498	23448	23448					0.09663200137129024
KLDTVSLPK	9	Unmodified	_KLDTVSLPK_					0	0	0			REV__nc|ENSG00000167634|Q8WX94|NLRP7	REV__nc|ENSG00000167634|Q8WX94|NLRP7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	500.8055	999.596446	0.067043	3.3575E-05	0.45656	0.00022865	0.5236	0.00026222	500.8056816327477	42.498	0.59172	42.498	42.251	42.842	0	0.018009	0.00018841	NaN	22.736	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346310	+		18557	17397	10497	10498							0.09663200137129024
KLDVDAPRLLK	11	Unmodified	_KLDVDAPRLLK_					0	0	0		SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant;SEC14L1|p.V620Efs*51|1|0.16|ENSG00000129657|chr17:77212192-77212193|-/TCTGAAAAAG|frameshift_variant;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.88165283203125	3	423.2626	1266.76597	-0.065021	-2.7521E-05	-0.47733	-0.00020204	-0.54235	-0.00022956	423.262351068137	39.557	0.36022	39.649	39.497	39.858	0.09267					17	12	2	0	0	0	0.33263	1	8335	8335		3.8459	1.9395	1	150120			18558	3434	10498	10499	23449	23449					0.1432589641967752
KLEDGPKFLK	10	Unmodified	_KLEDGPKFLK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8453369140625	2	587.845156	1173.67576	0.53411	0.00031397	0.15427	9.0689E-05	0.68838	0.00040466	587.8450475772889	29.619	0.61765	29.619	29.3	29.917	0					45	21	3	0	0	0	0.35267	1	5379	5379		12.175	5.073	1	176110			18559	5239	10499	10500	23450	23450					0.09586847091281925
KLEDGPKFLK	10	Unmodified	_KLEDGPKFLK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.845947265625	2	587.845156	1173.67576	0.34816	0.00020466	0.14207	8.3512E-05	0.49022	0.00028817	587.8451781568258	29.639	0.52793	29.652	29.302	29.83	0.012266					37	17	3	0	0	0	0.23252	1	5303	5303		44.392	14.955	1	186090			18560	5239	10499	10500	23451	23451					0.09586847091281925
KLEDGPKFLK	10	Unmodified	_KLEDGPKFLK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000513637.1_1_5:43495177-43495438:-|nuORF;ENST00000417549.1_1_13:28789725-28790031:+|nuORF	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.845458984375	2	587.845156	1173.67576	0.14597	8.581E-05	0.2601	0.0001529	0.40607	0.00023871	587.845141815719	29.658	0.52092	29.671	29.359	29.88	0.013475					39	17	3	0	0	0	0.026238	1	5307	5307		64.927	24.202	1	220580			18561	5239	10499	10500	23452	23452					0.09586847091281925
KLEDVKLQAFS	11	Unmodified	_KLEDVKLQAFS_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000517445.5_1_8:80962678-80964851:-|nuORF	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.26422119140625	3	426.574844	1276.7027	-0.094967	-4.051E-05	-1.9337	-0.00082485	-2.0286	-0.00086536	426.573997577473	16.994	0.31862	16.994	16.867	17.186	0					17	10	2	0	0	0	0.33263	1	1488	1488		3.8459	1.4111	1	30017			18562	12589	10500	10501	23453	23453					0.07541910911800187
KLEEDTFLL	9	Unmodified	_KLEEDTFLL_					0	0	0		nc|ENSG00000120925|Q96K19-2|RNF170;ENST00000528318.5_1_8:42716773-42751856:-|nuORF	nc|ENSG00000120925|Q96K19-2|RNF170	nc|ENSG00000120925|Q96K19-2|RNF170	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3137817382812	2	554.300247	1106.58594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.108	1	90.199	89.699	90.699	0.090668								0	0	0	0.2489	1	23865	23865		6.7232	1.4925	1				18563	11583	10501	10502	23454	23454					0.036911726920379806
KLEEIRSKS	9	Unmodified	_KLEEIRSKS_					0	0	0		nc|ENSG00000149527|O75038-5|PLCH2;ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;ENST00000473964.5_1_1:2433496-2434522:+|nuORF	nc|ENSG00000149527|O75038-5|PLCH2	nc|ENSG00000149527|O75038-5|PLCH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3170166015625	2	545.316763	1088.61897	0.44923	0.00024497	-0.11532	-6.2886E-05	0.33391	0.00018209	545.3167475035995	80.336	3.7431	80.336	79.338	83.081	0					624	150	6	0	0	0	0.29638	1	21322	21322		9.3831	0.63772	1	16346000			18564	9550	10502	10503	23455	23455					0.07820799534783873
KLEEIRSKS	9	Unmodified	_KLEEIRSKS_					0	0	0		nc|ENSG00000149527|O75038-5|PLCH2;ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;ENST00000473964.5_1_1:2433496-2434522:+|nuORF	nc|ENSG00000149527|O75038-5|PLCH2	nc|ENSG00000149527|O75038-5|PLCH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3167114257812	2	545.316763	1088.61897	0.6091	0.00033216	-0.26726	-0.00014574	0.34184	0.00018641	545.3166247243353	80.334	3.1168	80.308	79.473	82.59	-0.026817					523	123	6	0	0	0	0.29638	1	20929	20929		9.3831	9.3831	1	17985000			18565	9550	10502	10503	23456	23456					0.07820799534783873
KLEETDFVL	9	Unmodified	_KLEETDFVL_					0	0	0		ENSG00000181803|ENST00000320704|OR6S1	ENSG00000181803|ENST00000320704|OR6S1	ENSG00000181803|ENST00000320704|OR6S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7791137695312	2	547.292422	1092.57029	0.53158	0.00029093	1.0177	0.00055698	1.5493	0.00084791	547.2920794888466	80.196	0.89912	80.17	79.698	80.597	-0.026825					68	31	3	0	0	0	0.28674	1	20938	20938		10.824	0.75	1	201200			18566	7250	10503	10504	23457	23457					0.0277088617501704
KLEFALMPP	9	Unmodified	_KLEFALMPP_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;DNAH6|p.R2893Pfs*33|1|0.06|ENSG00000115423|chr2:84705697-84705698|-/CTTATCATATTCTAAAA|frameshift_variant;nc|ENSG00000115423|Q9C0G6-4|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3035888671875	2	523.291171	1044.56779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.766	1	90.766	90.266	91.266	0								0	0	0	0.2489	1	24074	24074		6.7232	0.51738	1				18567	2646	10504	10505	23458	23458					0.047287592363318254
KLEKELCLIE	10	Unmodified	_KLEKELCLIE_					0	0	0			REV__ENST00000435712.1_1_10:131904549-131906742:+|nuORF;REV__CTAGE1|p.A429Sfs*3|1|0.31|ENSG00000212710|chr18:22416527-22416528|-/T|frameshift_variant	REV__CTAGE1|p.A429Sfs*3|1|0.31|ENSG00000212710|chr18:22416527-22416528|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8472290039062	2	609.344132	1216.67371	0.51642	0.00031468	2.4445	0.0014895	2.9609	0.0018042	609.344574011909	83.032	0.94695	83.105	82.428	83.375	0.07309					76	36	3	0	0	0	0.31143	1	21488	21488		17.113	0	1	405090	+		18568	20999;13288	10505	10506	23459	23459					0.07404050291165731
KLEKWEDFRKL	11	Unmodified	_KLEKWEDFRKL_					0	0	0			REV__nc|ENSG00000119392|Q53GS7-2|GLE1	REV__nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.28302001953125	3	497.948793	1490.82455	0.45974	0.00022893	-0.54624	-0.000272	-0.086501	-4.3073E-05	497.9484461698804	39.726	0.65069	39.818	39.577	40.228	0.092674					64	22	4	0	0	0	0.33112	1	8405	8405		7.846	1.9779	1	826790	+		18569	15039	10506	10507	23460	23460					0.09876952994136445
KLELLHEESI	10	Unmodified	_KLELLHEESI_					0	0	0			REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	REV__nc|ENSG00000188877|Q6S8J7-2|POTEA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.8369750976562	2	605.837528	1209.6605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.887	1	12.819	12.319	13.319	-0.067496								0	0	0	0.37145	1	259	259		3.2813	0.28607	1		+		18570	23145	10507	10508	23461	23461					0.06405935503426008
KLELSVNV	8	Unmodified	_KLELSVNV_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.9328308105469	2	451.271293	900.528032	0.21269	9.5982E-05	-0.78849	-0.00035582	-0.5758	-0.00025984	451.27138323927795	90.533	0.13321	90.624	90.591	90.724	0.090668					13	9	2	0	0	0	0.34294	1	23990	23990		7.2892	0	1	61495	+		18571	13551	10508	10509	23462	23462					0.07378955557283007
KLEMEKRLQ	9	Unmodified	_KLEMEKRLQ_					0	0	0		ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8453369140625	2	587.834265	1173.65398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.649	1	29.649	29.149	30.149	0								0	0	0	0.21353	1	5330	5330		18.146	1.9972	1				18572	3418	10509	10510	23463	23463					0.07409719071074505
KLENLKWA	8	Unmodified	_KLENLKWA_					0	0	0		ENSG00000131951|ENST00000570145|LRRC9;nc|ENSG00000131951|Q6ZRR7|LRRC9;nc|ENSG00000131951|Q6ZRR7-2|LRRC9	ENSG00000131951|ENST00000570145|LRRC9	ENSG00000131951|ENST00000570145|LRRC9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.634521484375	2	501.292559	1000.57057	0.23037	0.00011548	-3.9275	-0.0019688	-3.6972	-0.0018534	501.2902091748954	95.745	0.12451	95.822	95.762	95.886	0.077408					11	8	2	0	0	0	0.34039	1	25579	25579		15.847	1.9411	1	54841			18573	3599	10510	10511	23464	23464					0.07030350685511166
KLEPSLIVD	9	Unmodified	_KLEPSLIVD_					0	0	0			REV__nc|ENSG00000101977|P10911-6|MCF2	REV__nc|ENSG00000101977|P10911-6|MCF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.309814453125	2	507.297507	1012.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.556	1	94.554	94.054	95.054	-0.0020142								0	0	0	0.23852	1	25228	25228		10.074	0	1		+		18574	14298	10511	10512	23465	23465					0.07467493900242061
KLEQNRRRLA	10	Unmodified	_KLEQNRRRLA_					0	0	0			REV__ENST00000496524.5_1_2:110922048-110962545:-|nuORF	REV__ENST00000496524.5_1_2:110922048-110962545:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.3845825195312	2	642.386377	1282.7582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.171	1	95.254	94.754	95.754	0.082779								0	0	0	0.37157	1	25413	25413		5.7319	0.83484	1		+		18575	16221	10512	10513	23466	23466					0.12813181942806295
KLERARDL	8	Unmodified	_KLERARDL_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7685958-7686162:-|nuORF;ENST00000600230.1_1_19:7685297-7686162:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7974853515625	2	500.79854	999.582528	0.54847	0.00027468	-0.74734	-0.00037427	-0.19887	-9.9593E-05	500.7978942113068	84.187	1.4366	84.17	83.698	85.135	-0.01683					141	61	4	0	0	0	0.40115	1	22011	22011		19.257	0	1	3310400			18576	1072	10513	10514	23467	23467					0.08271967428686366
KLERERGL	8	Unmodified	_KLERERGL_					0	0	0		ENSG00000136040|ENST00000258526|PLXNC1	ENSG00000136040|ENST00000258526|PLXNC1	ENSG00000136040|ENST00000258526|PLXNC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7986755371094	2	500.79854	999.582528	0.60502	0.00030299	-0.44872	-0.00022472	0.15629	7.8271E-05	500.79790209397606	84.28	1.8809	84.28	83.859	85.74	0					158	73	4	0	0	0	0.37071	1	22131	22131		22.736	3.4793	1	2938800			18577	3936	10514	10515	23468	23468					0.08271967428709104
KLERERGL	8	Unmodified	_KLERERGL_					0	0	0		ENSG00000136040|ENST00000258526|PLXNC1	ENSG00000136040|ENST00000258526|PLXNC1	ENSG00000136040|ENST00000258526|PLXNC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7986145019531	2	500.79854	999.582528	0.56083	0.00028086	-0.36543	-0.000183	0.1954	9.7856E-05	500.7979073363671	84.158	2.954	84.235	83.274	86.228	0.077095					170	115	2	0	0	0	0.37071	2	22095	21959;22095		22.736	3.4793	1	3131100			18578	3936	10514	10515	23469;23470	23470					0.08271967428709104
KLERERGL	8	Unmodified	_KLERERGL_					0	0	0		ENSG00000136040|ENST00000258526|PLXNC1	ENSG00000136040|ENST00000258526|PLXNC1	ENSG00000136040|ENST00000258526|PLXNC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.79852294921875	2	500.79854	999.582528	0.4222	0.00021144	1.0307	0.00051619	1.4529	0.00072762	500.79857270297003	89.166	0.82181	89.256	88.895	89.717	0.090569					120	45	4	0	0	0	0.4396	1	23552	23552		9.3831	0.78985	1	308040			18579	3936	10514	10515	23471	23471					0.08271967428709104
KLERERGL	8	Unmodified	_KLERERGL_					0	0	0		ENSG00000136040|ENST00000258526|PLXNC1	ENSG00000136040|ENST00000258526|PLXNC1	ENSG00000136040|ENST00000258526|PLXNC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.79876708984375	2	500.79854	999.582528	0.54847	0.00027468	-0.74734	-0.00037427	-0.19887	-9.9593E-05	500.7978942113068	84.187	1.4366	84.17	83.698	85.135	-0.01683					141	61	4	0	0	0	0.37071	1	22144	22144		22.736	3.4793	1	3310400			18580	3936	10514	10515	23472	23472					0.08271967428709104
KLERLLQSGL	10	Unmodified	_KLERLLQSGL_					0	0	0			REV__ENSG00000108671|ENST00000261712|PSMD11	REV__ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.8549194335938	2	578.856055	1155.69756	0.37046	0.00021444	-0.68792	-0.0003982	-0.31746	-0.00018376	578.8552628794213	38.273	0.98356	38.364	38.042	39.026	0.090881					93	35	4	0	0	0	0.022191	2	8058	8058;8068		69.338	7.7363	1	5283100	+		18581	14605	10515	10516	23473;23474	23473					0.12593651839847553
KLERNFQK	8	Unmodified	_KLERNFQK_					0	0	0		nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A;KIF4B|p.N790Sfs*35|1|0.07|ENSG00000226650|chr5:155016227-155016228|-/GC|frameshift_variant;ENSG00000226650|ENST00000435029|KIF4B	nc|ENSG00000090889|O95239-2|KIF4A	nc|ENSG00000090889|O95239-2|KIF4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8067016601562	2	531.806365	1061.59818	0.18021	9.5839E-05	0.049074	2.6098E-05	0.22929	0.00012194	531.8062336216575	18.331	0.69266	18.214	17.985	18.678	-0.11739					59	23	4	0	0	0	0.37937	1	1970	1970		21.747	0	1	406180			18582	1391	10516	10517	23475	23475					0.06984253945756791
KLERQRMLPIN	11	Unmodified	_KLERQRMLPIN_					0	0	0			REV__ENST00000515736.2_1_5:174938457-174940595:+|nuORF	REV__ENST00000515736.2_1_5:174938457-174940595:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.608154296875	3	466.606373	1396.79729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.612	1	91.702	91.202	92.202	0.090668								0	0	0	0.36075	1	24325	24325		5.8681	3.2369	1		+		18583	17161	10517	10518	23476	23476					0.11476146182167213
KLERQRMLPIN	11	Unmodified	_KLERQRMLPIN_					0	0	0			REV__ENST00000515736.2_1_5:174938457-174940595:+|nuORF	REV__ENST00000515736.2_1_5:174938457-174940595:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.6083068847656	3	466.606373	1396.79729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.892	1	91.982	91.482	92.482	0.090668								0	0	0	0.36232	1	24412	24412		5.5233	0.12058	1		+		18584	17161	10517	10518	23477	23477					0.11476146182167213
KLERQRMLPIN	11	Unmodified	_KLERQRMLPIN_					0	0	0			REV__ENST00000515736.2_1_5:174938457-174940595:+|nuORF	REV__ENST00000515736.2_1_5:174938457-174940595:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.6083984375	3	466.606373	1396.79729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.02	1	92.111	91.611	92.611	0.090668								0	0	0	0.36075	1	24452	24452		5.8681	0.46543	1		+		18585	17161	10517	10518	23478	23478					0.11476146182167213
KLESLLLCTL	10	Unmodified	_KLESLLLCTL_					0	0	0		ENST00000515800.6_1_5:86667940-86686697:+|nuORF;nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;RASA1|p.D972Tfs*6|1|0.13|ENSG00000145715|chr5:87386891-87386895|AGATG/-|frameshift_variant;ENSG00000145715|ENST00000274376|RASA1	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2796630859375	2	566.835942	1131.65733	0.20444	0.00011589	0.2541	0.00014403	0.45855	0.00025992	567.3373497300134	65.446	0.3848	65.435	65.257	65.641	-0.011337					22	13	3	0	0	0	0.31358	1	16279	16279		9.3831	4.0862	1	230610			18586	4666	10518	10519	23479	23479					0.0967696912507563
KLETTRIQG	9	Unmodified	_KLETTRIQG_					0	0	0		ENST00000591235.5_1_12:12224407-12224497:+|nuORF;ENST00000479717.1_1_12:12223989-12224497:+|nuORF	ENST00000591235.5_1_12:12224407-12224497:+|nuORF	ENST00000591235.5_1_12:12224407-12224497:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3034057617188	2	523.303655	1044.59276	0.35197	0.00018419	-0.31839	-0.00016661	0.033581	1.7573E-05	523.3033075822935	76.328	1.651	76.381	75.944	77.595	0.053413					205	58	5	0	0	0	0.30459	1	19816	19816		8.1555	0	1	2738400			18587	10996	10519	10520	23480	23480					0.07224530363282611
KLETTRIQG	9	Unmodified	_KLETTRIQG_					0	0	0		ENST00000591235.5_1_12:12224407-12224497:+|nuORF;ENST00000479717.1_1_12:12223989-12224497:+|nuORF	ENST00000591235.5_1_12:12224407-12224497:+|nuORF	ENST00000591235.5_1_12:12224407-12224497:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	523.303655	1044.59276	0.35197	0.00018419	-0.31839	-0.00016661	0.033581	1.7573E-05	523.3033075822935	76.328	1.651	76.381	75.944	77.595	0.053413	0.019566	6.0027E-05	NaN	8.1555	205	58	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2738400			18588	10996	10519	10520							0.07224530363282611
KLEYYFPF	8	Unmodified	_KLEYYFPF_					0	0	0			REV__nc|ENSG00000068615|Q9H902-2|REEP1	REV__nc|ENSG00000068615|Q9H902-2|REEP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.7816162109375	2	553.781493	1105.54843	0.35929	0.00019897	-0.36595	-0.00020265	-0.0066619	-3.6892E-06	553.7813149348239	26.93	0.69332	26.918	26.651	27.344	-0.01156					54	24	3	0	0	0	0.39956	1	4519	4519		19.439	0	1	530200	+		18589	13701	10520	10521	23481	23481					-0.00011873782909788133
KLFAQTMTQ	9	Unmodified	_KLFAQTMTQ_					0	0	0		ENST00000269187.9_2_18:33706408-33706567:-|nuORF	ENST00000269187.9_2_18:33706408-33706567:-|nuORF	ENST00000269187.9_2_18:33706408-33706567:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.8483276367188	2	534.281334	1066.54812	0.18705	9.994E-05	-0.1071	-5.722E-05	0.079957	4.2719E-05	534.2812399019537	19.228	0.59674	19.112	18.891	19.488	-0.11592					48	20	4	0	0	0	0.25431	1	2209	2209		9.3831	1.473	1	162840			18590	9073	10521	10522	23482	23482					0.017503832255897578
KLFAWRIFLRV	11	Unmodified	_KLFAWRIFLRV_					0	0	0		ENST00000455909.5_1_7:55756773-55756830:-|nuORF	ENST00000455909.5_1_7:55756773-55756830:-|nuORF	ENST00000455909.5_1_7:55756773-55756830:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.634765625	3	483.63448	1447.88161	0.41039	0.00019848	0.031462	1.5216E-05	0.44186	0.0002137	483.6344168036796	90.355	1.3826	90.355	89.823	91.205	0.00039673					329	106	5	0	0	0	0.48495	1	23819	23819		0.08335	0.08335	1	2061900			18591	10693	10522	10523	23483	23483					0.17558465061188144
KLFDFVNAK	9	Unmodified	_KLFDFVNAK_					0	0	0		ENST00000293880.9_1_11:57098199-57100416:-|nuORF;ENSG00000149136|ENST00000278412|SSRP1	ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENST00000293880.9_1_11:57098199-57100416:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.3290405273438	2	541.305667	1080.59678	0.46911	0.00025393	0.79068	0.000428	1.2598	0.00068194	541.30601852805	47.096	0.47618	47.148	46.929	47.405	0.052574					30	17	2	0	0	0	0.17696	1	10694	10694		23.79	2.9186	1	481070			18592	4848	10523	10524	23484	23484					0.05970619856975645
KLFDFVNAK	9	Unmodified	_KLFDFVNAK_					0	0	0		ENST00000293880.9_1_11:57098199-57100416:-|nuORF;ENSG00000149136|ENST00000278412|SSRP1	ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENST00000293880.9_1_11:57098199-57100416:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.305667	1080.59678	1.1807	0.0006391	-0.0030654	-1.6593E-06	1.1776	0.00063744	541.3054678653854	47.104	0.4125	47.158	46.972	47.384	0.054371	-0.0004905	-0.00050266	NaN	27.223	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	520030			18593	4848	10523	10524							0.05970619856975645
KLFMTLLFG	9	Unmodified	_KLFMTLLFG_					0	0	0		ENST00000431718.5_1_2:173426973-173435530:+|nuORF	ENST00000431718.5_1_2:173426973-173435530:+|nuORF	ENST00000431718.5_1_2:173426973-173435530:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7464599609375	2	535.309364	1068.60417	0.29782	0.00015943	0.55029	0.00029458	0.84811	0.000454	535.8111791239844	25.86	0.52505	25.838	25.608	26.133	-0.022236					23	18	2	0	0	0	0.26145	1	4209	4209		2.0598	0.21551	1	137370			18594	10478	10524	10525	23485	23485					0.07261636133080174
KLFMTLLFG	9	Unmodified	_KLFMTLLFG_					0	0	0		ENST00000431718.5_1_2:173426973-173435530:+|nuORF	ENST00000431718.5_1_2:173426973-173435530:+|nuORF	ENST00000431718.5_1_2:173426973-173435530:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	535.309364	1068.60417	0.066861	3.5791E-05	0.52051	0.00027863	0.58737	0.00031442	535.3096280024488	25.807	0.48664	25.768	25.582	26.069	-0.038671	-0.034955	-1.6894E-05	NaN	2.0598	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145000			18595	10478	10524	10525							0.07261636133080174
KLFNGTFLK	9	Unmodified	_KLFNGTFLK_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000411858.1_1_7:6854458-6863725:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.3157348632812	2	534.316035	1066.61752	0.73483	0.00039263	-1.3687	-0.00073131	-0.63387	-0.00033868	534.3154751997922	44.846	0.7438	44.846	44.462	45.206	0					67	26	4	0	0	0	0.010888	2	9955	9955;10004		78.06	18.692	1	854030			18596	3058	10525	10526	23486;23487	23486					0.08687210236644205
KLFNGTFLK	9	Unmodified	_KLFNGTFLK_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000411858.1_1_7:6854458-6863725:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.3158569335938	2	534.316035	1066.61752	0.49072	0.0002622	-0.9179	-0.00049045	-0.42718	-0.00022825	534.3157108625992	44.584	0.81119	44.653	44.223	45.034	0.068569					61	29	3	0	0	0	0.0023895	1	9900	9900		107.1	20.768	1	917200			18597	3058	10525	10526	23488	23488					0.08687210236644205
KLFNGTFLK	9	Unmodified	_KLFNGTFLK_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000411858.1_1_7:6854458-6863725:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.3160400390625	2	534.316035	1066.61752	0.60403	0.00032275	-1.1889	-0.00063524	-0.58486	-0.0003125	534.3155683872335	44.573	0.7879	44.648	44.2	44.988	0.075047					51	28	3	0	0	0	0.016571	1	9895	9895		69.338	9.9698	1	864270			18598	3058	10525	10526	23489	23489					0.08687210236644205
KLFPHMILL	9	Unmodified	_KLFPHMILL_					0	0	0			REV__nc|ENSG00000170899|O15217-2|GSTA4	REV__nc|ENSG00000170899|O15217-2|GSTA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3385009765625	2	556.338455	1110.66236	-0.1882	-0.00010471	-0.35174	-0.00019568	-0.53994	-0.00030039	556.3380955973296	12.542	0.32508	12.474	12.345	12.67	-0.06806					20	10	3	0	0	0	0.34374	1	154	154		2.3027	0	1	95213	+		18599	17603	10526	10527	23490	23490					0.11145317778345998
KLFRFCKS	8	Unmodified	_KLFRFCKS_					0	0	0		ENST00000404972.2_1_6:27748770-27748833:-|nuORF	ENST00000404972.2_1_6:27748770-27748833:-|nuORF	ENST00000404972.2_1_6:27748770-27748833:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7593383789062	2	514.78913	1027.56371	-0.1125	-5.7915E-05	2.8652	0.001475	2.7527	0.0014171	514.7905945539379	14.053	0.14985	13.948	13.873	14.023	-0.10466					6	4	2	0	0	0	0.34353	1	594	594		4.756	0	1	27355			18600	10215	10527	10528	23491	23491					0.05102714533290964
KLGLEQFF	8	Unmodified	_KLGLEQFF_					0	0	0			REV__ENSG00000120832|ENST00000240050|MTERF2	REV__ENSG00000120832|ENST00000240050|MTERF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.8291931152344	2	491.273835	980.533118	0.42887	0.00021069	0.42627	0.00020942	0.85514	0.00042011	491.27402241060184	62.577	0.68491	62.674	62.383	63.068	0.096985					45	24	2	0	0	0	0.31934	1	15422	15422		18.135	18.135	1	856950	+		18601	15096	10528	10529	23492	23492					0.04207259419899856
KLIAFPMFEL	10	Unmodified	_KLIAFPMFEL_					0	0	0			REV__ENST00000438528.7_2_8:42408025-42408145:+|nuORF	REV__ENST00000438528.7_2_8:42408025-42408145:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.55462646484375	3	403.563111	1207.6675	-0.5419	-0.00021869	0.0018322	7.3941E-07	-0.54007	-0.00021795	403.5631270555854	13.943	0.38836	13.839	13.603	13.991	-0.10466					18	13	2	0	0	0	0.39612	1	569	569		4.1895	0	1	43503	+		18602	21029	10529	10530	23493	23493					0.07197576850307996
KLIILYYYN	9	Unmodified	_KLIILYYYN_					0	0	0			REV__nc|ENSG00000011426|Q9NQW6-2|ANLN	REV__nc|ENSG00000011426|Q9NQW6-2|ANLN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.3694458007812	2	601.844625	1201.6747	0.12649	7.6128E-05	2.3926	0.00144	2.5191	0.0015161	601.845851987079	12.495	0.19113	12.495	12.364	12.555	0					9	5	2	0	0	0	0.26257	1	156	156		0.52476	0.12405	1	21810	+		18603	13431	10530	10531	23494	23494					0.08192632722375492
KLIKPAALDK	10	Unmodified	_KLIKPAALDK_					0	0	0		ENST00000497936.5_1_6:84884653-84936120:-|nuORF;nc|ENSG00000135315|Q5TB80-2|CEP162;ENSG00000135315|ENST00000403245|CEP162	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2957763671875	2	548.858067	1095.70158	0.099636	5.4686E-05	-3.7651	-0.0020665	-3.6654	-0.0020118	548.8557195022909	14.251	0.2307	14.251	14.164	14.395	0					9	7	2	0	0	0	0.32132	1	684	684		1.4819	0	1	22620			18604	3859	10531	10532	23495	23495					0.1575574133353257
KLIPGVEYLVS	11	Unmodified	_KLIPGVEYLVS_					0	0	0		nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC	nc|ENSG00000041982|P24821-4|TNC	nc|ENSG00000041982|P24821-4|TNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.3609008789062	2	609.360639	1216.70673	0.036384	2.2171E-05	0.452	0.00027543	0.48838	0.0002976	609.3609263288597	13.215	0.30588	13.215	13.09	13.396	0					23	10	3	0	0	0	0.46277	1	369	369		2.9952	0.26005	1	127020			18605	608	10532	10533	23496	23496					0.10704000405507941
KLIPGVEYLVS	11	Unmodified	_KLIPGVEYLVS_					0	0	0		nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC	nc|ENSG00000041982|P24821-4|TNC	nc|ENSG00000041982|P24821-4|TNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.3610229492188	2	609.360639	1216.70673	0.040177	2.4482E-05	0.5754	0.00035063	0.61558	0.00037511	609.3609520765698	13.291	0.26534	13.192	13.097	13.362	-0.099291					21	8	3	0	0	0	0.46277	1	391	391		2.9952	1.151	1	120670			18606	608	10532	10533	23497	23497					0.10704000405507941
KLIRYMETQK	10	Unmodified	_KLIRYMETQK_					0	0	0			REV__ENST00000439706.5_1_12:46582621-46582756:-|nuORF	REV__ENST00000439706.5_1_12:46582621-46582756:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.7455749511719	3	437.248074	1308.72239	0.10869	4.7527E-05	1.8932	0.00082779	2.0019	0.00087532	437.24837496542585	36.092	0.64368	36.092	35.773	36.416	0					47	23	3	0	0	0	0.31994	1	7254	7254		5.4027	0.35519	1	367600	+		18607	21039	10533	10534	23498	23498					0.08037963650917845
KLKEEQIGF	9	Unmodified	_KLKEEQIGF_					0	0	0			REV__nc|ENSG00000136051|Q2M389-2|WASHC4	REV__nc|ENSG00000136051|Q2M389-2|WASHC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.771484375	2	546.308406	1090.60226	0.54078	0.00029543	-0.15092	-8.245E-05	0.38985	0.00021298	546.3085366917784	24.648	0.46593	24.592	24.344	24.809	-0.055931					31	15	3	0	0	0	0.25988	1	3845	3845		3.9444	0.3479	1	75379	+		18608	15785	10534	10535	23499	23499					0.06058298648804339
KLKEQRQLLEL	11	Unmodified	_KLKEQRQLLEL_					0	0	0		ENST00000448393.6_1_1:158985703-158988049:+|nuORF	ENST00000448393.6_1_1:158985703-158988049:+|nuORF	ENST00000448393.6_1_1:158985703-158988049:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.62017822265625	3	466.620676	1396.8402	-0.39429	-0.00018398	-0.54157	-0.00025271	-0.93586	-0.00043669	466.6203588223507	106.39	0.1282	106.39	106.32	106.45	0					52	17	4	0	0	0	0.47633	1	28125	28125		1.2148	1.2148	1	2427500			18609	10617	10535	10536	23500	23500					0.15765239511256368
KLKEQRQLLEL	11	Unmodified	_KLKEQRQLLEL_					0	0	0		ENST00000448393.6_1_1:158985703-158988049:+|nuORF	ENST00000448393.6_1_1:158985703-158988049:+|nuORF	ENST00000448393.6_1_1:158985703-158988049:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	466.620676	1396.8402	-0.17138	-7.9971E-05	-0.44114	-0.00020584	-0.61252	-0.00028581	466.6203852225081	106.39	0.15073	106.38	106.31	106.46	-0.0060501	-0.007366	0.0003782	NaN	1.2148	54	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1426300			18610	10617	10535	10536							0.15765239511256368
KLKEQRQLLEL	11	Unmodified	_KLKEQRQLLEL_					0	0	0		ENST00000448393.6_1_1:158985703-158988049:+|nuORF	ENST00000448393.6_1_1:158985703-158988049:+|nuORF	ENST00000448393.6_1_1:158985703-158988049:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	466.620676	1396.8402	0.14949	6.9755E-05	-1.002	-0.00046757	-0.85255	-0.00039782	466.62013324046694	106.39	0.13058	106.39	106.33	106.46	0.0050507	0.0065332	-0.00040699	NaN	1.2148	55	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1884600			18611	10617	10535	10536							0.15765239511256368
KLKEYYSEKKL	11	Unmodified	_KLKEYYSEKKL_					0	0	0			REV__nc|nan|Q6P1S2-2|C3orf33	REV__nc|nan|Q6P1S2-2|C3orf33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.9414978027344	3	476.941415	1427.80242	-0.065477	-3.1229E-05	0.13908	6.6331E-05	0.073599	3.5102E-05	476.9415659840672	25.583	0.93473	25.552	25.047	25.982	-0.031408					100	33	4	0	0	0	0.47633	1	4058	4058		1.2148	0	1	690290	+		18612	17862	10536	10537	23501	23501					0.10562728525724197
KLKFEKVY	8	Unmodified	_KLKFEKVY_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;ENST00000462119.5_1_6:111628768-111636625:-|nuORF	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.8168334960938	2	527.81841	1053.62227	0.34968	0.00018457	-2.3461	-0.0012383	-1.9964	-0.0010537	528.3188483045254	19.196	0.61304	19.141	18.903	19.516	-0.055693					60	20	4	0	0	0	0.44569	1	2222	2222		7.2892	0	1	291230			18613	407	10537	10538	23502	23502					0.09760094379430484
KLKHAYLQKY	10	Unmodified	_KLKHAYLQKY_					0	0	0			REV__L1PBa_dup1914|chr16:20454552-20458311:+|1.873729371871474|0.2397336971051269|2.97|524.0|63|2|sense	REV__L1PBa_dup1914|chr16:20454552-20458311:+|1.873729371871474|0.2397336971051269|2.97|524.0|63|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.88665771484375	3	431.255557	1290.74484	-0.38197	-0.00016472	2.1324	0.00091962	1.7505	0.0007549	431.5915460051426	14.965	0.72725	14.965	14.591	15.319	0					59	25	4	0	0	0	0.32082	1	906	906		3.3196	0.82116	1	200210	+		18614	22833	10538	10539	23503	23503					0.11109931110831894
KLKHTENTF	9	Unmodified	_KLKHTENTF_					0	0	0		nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;ENST00000472096.1_1_7:134625950-134632541:+|nuORF	nc|ENSG00000122786|Q05682-4|CALD1	nc|ENSG00000122786|Q05682-4|CALD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.7645263671875	2	559.303655	1116.59276	-0.024849	-1.3898E-05	-2.7625	-0.001545	-2.7873	-0.0015589	559.3019947693814	30.378	0.47991	30.405	30.189	30.669	0.027157					29	16	2	0	0	0	0.24311	1	5522	5522		16.942	0	1	155980			18615	3071	10539	10540	23504	23504					0.03912530363254518
KLKISLADK	9	Unmodified	_KLKISLADK_					0	0	0			REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7633361816406	2	508.329142	1014.64373	0.55741	0.00028335	-0.41549	-0.0002112	0.14192	7.2144E-05	508.328911770103	21.067	0.42515	20.956	20.779	21.205	-0.11003					19	14	2	0	0	0	0.25346	1	2702	2702		10.8	1.4164	1	43683	+		18616	21233	10540	10541	23505	23505					0.13699479408114712
KLKISLADK	9	Unmodified	_KLKISLADK_					0	0	0			REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.329142	1014.64373	0.45771	0.00023267	-0.045308	-2.3032E-05	0.4124	0.00020963	508.3290300791322	20.946	0.48029	20.893	20.695	21.176	-0.052912	0.0064665	0.00013728	NaN	10.8	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51346	+		18617	21233	10540	10541							0.13699479408114712
KLKKKVAIFIF	11	Unmodified	_KLKKKVAIFIF_					0	0	0			REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF	REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.6358337402344	3	445.635598	1333.88496	0.39246	0.00017489	-0.14833	-6.6102E-05	0.24413	0.00010879	445.6356193784322	33.487	1.2457	33.487	33.31	34.556	0					209	44	5	0	0	0	0.48486	2	6620	6620;6671		0.094841	0.011491	1	11149000	+		18618	21980	10541	10542	23506;23507	23506					0.23137715115194624
KLKKKVAIFIF	11	Unmodified	_KLKKKVAIFIF_					0	0	0			REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF	REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.6358337402344	3	445.635598	1333.88496	0.39976	0.00017815	-0.010077	-4.4905E-06	0.38968	0.00017366	445.6356351473047	33.235	1.3314	33.291	33.171	34.502	0.055309					225	47	5	0	0	0	0.48486	1	6596	6596		0.094841	0	1	9976100	+		18619	21980	10541	10542	23508	23508					0.23137715115194624
KLKKKVAIFIF	11	Unmodified	_KLKKKVAIFIF_					0	0	0			REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF	REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.6358947753906	3	445.635598	1333.88496	0.1186	5.2852E-05	0.32721	0.00014582	0.44581	0.00019867	445.6357708622988	33.343	1.1926	33.41	33.271	34.463	0.066704					200	42	5	0	0	0	0.48486	2	6575	6575;6619		0.094841	0.011491	1	9303900	+		18620	21980	10541	10542	23509;23510	23509					0.23137715115194624
KLKLVALHK	9	Unmodified	_KLKLVALHK_					0	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.363525390625	2	525.363319	1048.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.73	1	112.73	112.23	113.23	0								0	0	0	0.26829	1	29291	29291		0	0	1				18621	7323	10542	10543	23511	23511					0.1896776877861157
KLKLVALHK	9	Unmodified	_KLKLVALHK_					0	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3641357421875	2	525.363319	1048.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.27	1	114.28	113.78	114.78	0.016708								0	0	0	0.26829	1	29717	29717		0	0	1				18622	7323	10542	10543	23512	23512					0.1896776877861157
KLKLVALHK	9	Unmodified	_KLKLVALHK_					0	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3632202148438	2	525.363319	1048.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.58	1	115.6	115.1	116.1	0.018738								0	0	0	0.26829	1	30017	30017		0	0	1				18623	7323	10542	10543	23513	23513					0.1896776877861157
KLKLVALHK	9	Unmodified	_KLKLVALHK_					0	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.36376953125	2	525.363319	1048.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.85	1	117.87	117.37	118.37	0.023476								0	0	0	0.26829	1	30536	30536		0	0	1				18624	7323	10542	10543	23514	23514					0.1896776877861157
KLKNFSINVV	10	Unmodified	_KLKNFSINVV_					0	0	0			REV__ENST00000431635.6_1_1:43629987-43630104:-|nuORF	REV__ENST00000431635.6_1_1:43629987-43630104:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.2886352539062	2	581.353148	1160.69174	0.40308	0.00023433	-0.10994	-6.3913E-05	0.29314	0.00017042	581.3529061595215	49.049	0.49714	49.049	48.883	49.38	0					31	17	3	0	0	0	0.31237	1	11325	11325		11.495	1.3441	1	478810	+		18625	20954	10543	10544	23515	23515					0.11782553328180256
KLKNFSINVV	10	Unmodified	_KLKNFSINVV_					0	0	0			REV__ENST00000431635.6_1_1:43629987-43630104:-|nuORF	REV__ENST00000431635.6_1_1:43629987-43630104:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.2891845703125	2	581.353148	1160.69174	0.14238	8.2775E-05	0.096983	5.6381E-05	0.23937	0.00013916	581.3530425587845	49.031	0.55875	49.063	48.852	49.411	0.032047					32	19	2	0	0	0	0.30093	1	11261	11261		21.537	1.1224	1	451250	+		18626	20954	10543	10544	23516	23516					0.11782553328180256
KLKNTLRN	8	Unmodified	_KLKNTLRN_					0	0	0		nc|ENSG00000121897|O43766-2|LIAS;nc|ENSG00000121897|O43766-3|LIAS;ENSG00000121897|ENST00000640888|LIAS	nc|ENSG00000121897|O43766-2|LIAS	nc|ENSG00000121897|O43766-2|LIAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.2927551269531	2	493.808908	985.603263	-0.013723	-6.7763E-06	-0.63333	-0.00031274	-0.64705	-0.00031952	493.80852595923994	13.789	0.34002	13.723	13.521	13.861	-0.066068					18	11	2	0	0	0	0.34388	1	535	535		3.5965	1.2938	1	50509			18627	3017	10544	10545	23517	23517					0.10988557808377664
KLKQGFWEKF	10	Unmodified	_KLKQGFWEKF_					0	0	0		ENST00000511359.1_1_5:23303923-23304922:-|nuORF	ENST00000511359.1_1_5:23303923-23304922:-|nuORF	ENST00000511359.1_1_5:23303923-23304922:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2676696777344	3	437.580041	1309.71829	-0.069952	-3.061E-05	0.0016314	7.1385E-07	-0.06832	-2.9896E-05	437.5798608162127	46.18	0.99713	46.24	45.31	46.307	0.059837					47	35	2	0	0	0	0.32051	1	10189	10189		1.9064	1.7665	1	328110			18628	11385	10545	10546	23518	23518					0.07582242219496038
KLKQSYRSV	9	Unmodified	_KLKQSYRSV_					0	0	0			REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__nc|ENSG00000225830|P0DP91|ERCC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.24609375	2	554.827298	1107.64004	0.68907	0.00038232	-1.9846	-0.0011011	-1.2955	-0.00071878	554.8263508611536	36.669	0.38319	36.762	36.567	36.951	0.093018					15	13	2	0	0	0	0.26168	1	7515	7515		1.8442	0	1	127980	+		18629	23198	10546	10547	23519	23519					0.09052809634272307
KLKWFYYS	8	Unmodified	_KLKWFYYS_					0	0	0		RNF139|p.L406Pfs*11|1|0.25|ENSG00000170881|chr8:124486866-124486866|T/-|frameshift_variant;ENSG00000170881|ENST00000303545|RNF139	RNF139|p.L406Pfs*11|1|0.25|ENSG00000170881|chr8:124486866-124486866|T/-|frameshift_variant	RNF139|p.L406Pfs*11|1|0.25|ENSG00000170881|chr8:124486866-124486866|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.8035888671875	2	567.80276	1133.59097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.067	1	16.95	16.45	17.45	-0.11739								0	0	0	0.38004	1	1520	1520		0.69038	0	1				18630	6488	10547	10548	23520	23520					0.029515213453350952
KLKYLAFLR	9	Unmodified	_KLKYLAFLR_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A;ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.3544921875	2	576.368601	1150.72265	0.40288	0.00023221	1.5332	0.00088369	1.9361	0.0011159	576.3692877909899	37.939	0.76583	37.939	37.503	38.269	0					40	26	2	0	0	0	0.28128	1	7962	7962		11.64	0	1	134270			18631	4450;10894	10548	10549	23521	23521					0.153317514330638
KLKYLAFLR	9	Unmodified	_KLKYLAFLR_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A;ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3545532226562	2	576.368601	1150.72265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.132	1	38.23	37.73	38.73	0.097527								0	0	0	0.23367	1	7913	7913		11.64	0.81637	1				18632	4450;10894	10548	10549	23522	23522					0.153317514330638
KLKYLAFLR	9	Unmodified	_KLKYLAFLR_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A;ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	576.368601	1150.72265	0.3999	0.00023049	1.3186	0.00075999	1.7185	0.00099048	576.3693231374558	38.095	0.7663	38.186	37.527	38.294	0.090881	0.12334	-7.2159E-05	NaN	11.64	48	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158930			18633	4450;10894	10548	10549							0.153317514330638
KLLAAIQLF	9	Unmodified	_KLLAAIQLF_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.302001953125	2	508.828778	1015.643	0.2511	0.00012777	-0.33015	-0.00016799	-0.079046	-4.0221E-05	508.828421447841	49.294	0.67874	49.339	49.016	49.695	0.044891					38	24	2	0	0	0	0.22596	1	11333	11333		10.824	0	1	154460			18634	8126	10549	10550	23523	23523					0.13580684759074302
KLLCLPLPGH	10	Unmodified	_KLLCLPLPGH_					0	0	0			REV__ENSG00000181751|ENST00000319933|MACIR	REV__ENSG00000181751|ENST00000319933|MACIR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.7875366210938	2	545.825712	1089.63687	0.42463	0.00023178	2.2265	0.0012153	2.6511	0.0014471	545.8271465557276	24.678	0.36218	24.678	24.454	24.817	0					16	11	2	0	0	0	0.31847	1	3855	3855		6.7232	3.7279	1	47852	+		18635	18162	10550	10551	23524	23524					0.09563843255932625
KLLDKERKE	9	Unmodified	_KLLDKERKE_					0	0	0			REV__ENSG00000131437|ENST00000403231|KIF3A	REV__ENSG00000131437|ENST00000403231|KIF3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.8442993164062	2	579.845687	1157.67682	0.20481	0.00011876	-1.7756	-0.0010296	-1.5708	-0.00091084	579.8443690280482	92.444	0.64767	92.444	92.249	92.897	0					66	49	2	0	0	0	0.33508	1	24626	24626		3.5965	0	1	150140	+		18636	15513	10551	10552	23525	23525					0.10429061460149569
KLLEKHIT	8	Unmodified	_KLLEKHIT_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7829284667969	2	491.30821	980.601866	0.27609	0.00013564	-0.50721	-0.0002492	-0.23112	-0.00011355	491.3078717698403	26.591	0.36905	26.553	26.402	26.771	-0.038671					21	12	2	0	0	0	0.3415	1	4383	4383		8.7454	0	1	78532			18637	1468;3087;4931	10552	10553	23526	23526					0.11078923719594513
KLLIYRLSYSU	11	Unmodified	_KLLIYRLSYSU_					0	0	0			REV__ENSG00000186838|ENST00000335426|SELENOV	REV__ENSG00000186838|ENST00000335426|SELENOV	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.9592590332031	3	469.569691	1405.68724	0.37221	0.00017478	-0.28861	-0.00013552	0.0836	3.9256E-05	469.5694944906014	91.28	0.54377	91.281	91.193	91.737	0.00046539					58	36	2	0	0	0	0.33296	1	24331	24331		0	0	0	353820	+		18638	18472	10553	10554	23527	23527					0.0006280055965817155
KLLKTIQL	8	Unmodified	_KLLKTIQL_					0	0	0		ENSG00000233917|ENST00000439682|POTEB;ENSG00000230031|ENST00000454856|POTEB2	ENSG00000233917|ENST00000439682|POTEB	ENSG00000233917|ENST00000439682|POTEB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.30267333984375	2	478.828778	955.643003	0.51828	0.00024817	-0.80131	-0.00038369	-0.28303	-0.00013552	478.82850034155535	45.707	0.49783	45.707	45.476	45.974	0					24	17	2	0	0	0	0.33293	1	10210	10210		14.838	0	1	203270			18639	8465	10554	10555	23528	23528					0.16340684759086344
KLLKTIQL	8	Unmodified	_KLLKTIQL_					0	0	0		ENSG00000233917|ENST00000439682|POTEB;ENSG00000230031|ENST00000454856|POTEB2	ENSG00000233917|ENST00000439682|POTEB	ENSG00000233917|ENST00000439682|POTEB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.30255126953125	2	478.828778	955.643003	0.43758	0.00020953	-0.48829	-0.00023381	-0.050707	-2.428E-05	478.82861022384793	45.502	0.31682	45.562	45.475	45.792	0.059834					16	10	2	0	0	0	0.33293	1	10187	10187		20.454	0	1	189410			18640	8465	10554	10555	23529	23529					0.16340684759086344
KLLLQVQIR	9	Unmodified	_KLLLQVQIR_					0	0	0		ENST00000339438.10_1_1:115292720-115292798:-|nuORF	ENST00000339438.10_1_1:115292720-115292798:-|nuORF	ENST00000339438.10_1_1:115292720-115292798:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2583618164062	2	555.871508	1109.72846	0.25893	0.00014393	-0.72502	-0.00040302	-0.46609	-0.00025909	555.8711442799995	44.086	0.29637	44.086	43.959	44.255	0					14	10	2	0	0	0	0.25323	1	9741	9741		10.074	3.3508	1	227540			18641	9511	10555	10556	23530	23530					0.17798849944733774
KLLLVGNL	8	Unmodified	_KLLLVGNL_					0	0	0		ENST00000356218.8_1_14:51955989-52156529:+|nuORF;ENST00000554745.1_1_14:52037087-52110185:+|nuORF;ENST00000555952.5_1_14:52037087-52045744:+|nuORF;ENST00000557001.5_1_14:52037087-52042616:+|nuORF	ENST00000356218.8_1_14:51955989-52156529:+|nuORF	ENST00000356218.8_1_14:51955989-52156529:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.576171875	2	435.294571	868.574589	0.041155	1.7914E-05	-0.51645	-0.00022481	-0.47529	-0.00020689	435.2943121281897	37.867	0.56025	37.867	37.646	38.206	0					33	19	2	0	0	0	0.34131	1	7943	7943		12.532	0.89125	1	187230			18642	9617	10556	10557	23531	23531					0.13504440179224275
KLLLYIMIK	9	Unmodified	_KLLLYIMIK_					0	0	0			REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.303466796875	2	567.869588	1133.72462	0.42212	0.00023971	-0.29709	-0.00016871	0.12503	7.0998E-05	567.8695189676555	59.525	0.43181	59.513	59.251	59.683	-0.011486					20	14	2	0	0	0	0.25988	1	14483	14483		1.6526	1.6526	1	201420	+		18643	22657	10557	10558	23532	23532					0.1631104412665536
KLLMVARRRP	10	Unmodified	_KLLMVARRRP_					0	0	0			REV__ENST00000484662.1_1_1:78445136-78445292:+|nuORF	REV__ENST00000484662.1_1_1:78445136-78445292:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.93267822265625	3	413.932531	1238.77576	0.34782	0.00014398	0.18233	7.5472E-05	0.53015	0.00021945	413.93255989725066	38.638	0.97591	38.735	38.122	39.098	0.097527					66	34	3	0	0	0	0.32082	1	7928	7928		1.5923	1.5923	1	454470	+		18644	21535	10558	10559	23533	23533					0.1659280594408301
KLLMVARRRP	10	Unmodified	_KLLMVARRRP_					0	0	0			REV__ENST00000484662.1_1_1:78445136-78445292:+|nuORF	REV__ENST00000484662.1_1_1:78445136-78445292:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	413.932531	1238.77576	0.29023	0.00012014	0.10662	4.4135E-05	0.39685	0.00016427	413.93246190781457	38.551	0.87956	38.642	38.32	39.2	0.090881	-0.046642	-5.6474E-05	NaN	1.5923	75	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501880	+		18645	21535	10558	10559							0.1659280594408301
KLLNRKKRVSF	11	Unmodified	_KLLNRKKRVSF_					0	0	0			REV__ENST00000336838.10_1_2:55591129-55601970:-|nuORF	REV__ENST00000336838.10_1_2:55591129-55601970:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.2777404785156	3	463.633139	1387.87759	0.13976	6.4796E-05	-0.33227	-0.00015405	-0.19251	-8.9254E-05	463.6330561760143	49.291	0.54527	49.291	48.97	49.516	0					29	19	2	0	0	0	0.3322	1	11262	11262		4.7159	4.3077	1	190190	+		18646	20077	10559	10560	23534	23534					0.19916375567481737
KLLNRKKRVSF	11	Unmodified	_KLLNRKKRVSF_					0	0	0			REV__ENST00000336838.10_1_2:55591129-55601970:-|nuORF	REV__ENST00000336838.10_1_2:55591129-55601970:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2778625488281	3	463.633139	1387.87759	-0.0029255	-1.3564E-06	-0.30491	-0.00014137	-0.30784	-0.00014272	463.6330423805541	49.308	0.49456	49.353	49.045	49.54	0.044891					33	17	3	0	0	0	0.3322	1	11264	11264		2.6312	2.558	1	211960	+		18647	20077	10559	10560	23535	23535					0.19916375567481737
KLLPLQGQL	9	Unmodified	_KLLPLQGQL_					0	0	0		nc|ENSG00000254838|Q7Z2Y8|GVINP1;ENST00000526769.3_1_11:6735844-6741409:-|nuORF	nc|ENSG00000254838|Q7Z2Y8|GVINP1	nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.277099609375	2	505.32386	1008.63317	0.17417	8.8013E-05	-1.142	-0.00057708	-0.96783	-0.00048907	505.3231777857549	57.455	0.2448	57.438	57.337	57.582	-0.0172					13	8	2	0	0	0	0.24688	1	13843	13843		10.074	0	1	235890			18648	12981	10560	10561	23536	23536					0.12919496753693238
KLLRTGPK	8	Unmodified	_KLLRTGPK_					0	0	0			REV__nc|ENSG00000121152|Q15003-2|NCAPH	REV__nc|ENSG00000121152|Q15003-2|NCAPH	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.79290771484375	2	456.803094	911.591636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.147	1	35.147	34.647	35.647	0								0	0	0	0.34229	1	7007	7007		18.135	4.6271	1		+		18649	15112	10561	10562	23537	23537					0.1323036078503037
KLLRWMLVKNN	11	Unmodified	_KLLRWMLVKNN_					0	0	0			REV__ENSG00000204267|ENST00000374897|TAP2	REV__ENSG00000204267|ENST00000374897|TAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.283203125	3	472.28323	1413.82786	0.1337	6.3143E-05	0.27505	0.0001299	0.40875	0.00019305	472.28317047279177	90.495	1.5395	90.495	89.813	91.353	0					450	122	5	0	0	0	0.46554	2	23951	23951;24112		2.6312	2.6312	1	2429900	+		18650	18929	10562	10563	23538;23539	23538					0.13749924567196103
KLLSWIKNES	10	Unmodified	_KLLSWIKNES_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-4|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8477172851562	2	609.348063	1216.68157	0.34406	0.00020965	-0.11996	-7.3095E-05	0.22411	0.00013656	609.8500737213892	81.308	0.56906	81.308	81.039	81.608	0					46	24	3	0	0	0	0.31794	1	21195	21195		8.1555	5.4203	1	217480			18651	3900	10563	10564	23540	23540					0.0818994560295323
KLLSWIKNES	10	Unmodified	_KLLSWIKNES_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-4|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.84765625	2	609.348063	1216.68157	0.51233	0.00031219	0.085841	5.2307E-05	0.59817	0.00036449	609.3478863697037	82.549	0.61135	82.549	82.313	82.925	0					32	22	2	0	0	0	0.31926	1	21498	21498		5.7319	2.4505	1	279430			18652	3900	10563	10564	23541	23541					0.0818994560295323
KLLSWIKNES	10	Unmodified	_KLLSWIKNES_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-4|PCNX2;nc|ENSG00000135749|A6NKB5-3|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8473510742188	2	609.348063	1216.68157	0.47147	0.00028729	-3.8646	-0.0023549	-3.3931	-0.0020676	609.3446278726323	83.141	0.78719	83.12	82.744	83.531	-0.020584					65	30	3	0	0	0	0.31794	1	21835	21835		8.1555	1.9497	1	486250			18653	3900	10563	10564	23542	23542					0.0818994560295323
KLMKKVAKKVE	11	Unmodified	_KLMKKVAKKVE_					0	0	0			REV__ENSG00000172489|ENST00000313033|OR5T3	REV__ENSG00000172489|ENST00000313033|OR5T3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.5711975097656	3	434.616097	1300.82646	-0.14624	-6.3558E-05	-0.39468	-0.00017153	-0.54091	-0.00023509	434.61589718817726	19.364	0.39327	19.248	18.947	19.341	-0.11592					17	13	2	0	0	0	0.33336	1	2223	2223		1.1098	0.41209	1	46114	+		18654	17717	10564	10565	23543	23543					0.18808290478409617
KLMQEWFKL	9	Unmodified	_KLMQEWFKL_					0	0	0		ENSG00000243156|ENST00000441493|MICAL3;ENST00000252134.11_1_22:18273500-18274125:-|nuORF	ENSG00000243156|ENST00000441493|MICAL3	ENSG00000243156|ENST00000441493|MICAL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.836181640625	2	611.836277	1221.658	0.17479	0.00010694	-0.85461	-0.00052288	-0.67982	-0.00041594	611.8359319717862	24.923	0.64975	24.867	24.691	25.341	-0.055931					54	22	4	0	0	0	0.29124	1	3946	3946		6.2058	4.7239	1	482990			18655	8556	10565	10566	23544	23544					0.056038085647742264
KLNDFYGINR	10	Unmodified	_KLNDFYGINR_					0	0	0			REV__ENST00000514253.2_1_5:81460277-81572080:+|nuORF	REV__ENST00000514253.2_1_5:81460277-81572080:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2660827636719	3	413.887533	1238.64077	-0.19634	-8.1262E-05	2.0249	0.0008381	1.8286	0.00075684	414.2221578911579	12.762	0.15241	12.695	12.61	12.763	-0.067495					6	4	2	0	0	0	0.32132	1	234	234		0.62683	0.39098	1	7354.5	+		18656	21833	10566	10567	23545	23545					0.03099604283329427
KLNGQVLVF	9	Unmodified	_KLNGQVLVF_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.30804443359375	2	509.30821	1016.60187	0.70841	0.0003608	-0.75885	-0.00038649	-0.050443	-2.5691E-05	509.30783338312693	54.826	0.67207	54.826	54.526	55.198	0					53	24	3	0	0	0	0.088391	1	13039	13039		39.957	3.9131	1	808520			18657	1512	10567	10568	23546	23546					0.09422923719614573
KLNGQVLVF	9	Unmodified	_KLNGQVLVF_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3081359863281	2	509.30821	1016.60187	0.64473	0.00032837	-0.63693	-0.00032439	0.0078012	3.9732E-06	509.30786854772595	54.965	0.50287	54.949	54.681	55.184	-0.015923					41	18	3	0	0	0	0.2322	1	13062	13062		14.838	2.3067	1	1174000			18658	1512	10567	10568	23547	23547					0.09422923719614573
KLNNVRLPRE	10	Unmodified	_KLNNVRLPRE_					0	0	0		ENST00000533627.5_1_11:118404537-118405292:+|nuORF;nc|ENSG00000149582|Q86YD3-3|TMEM25;nc|ENSG00000149582|Q86YD3-5|TMEM25;nc|ENSG00000149582|Q86YD3-2|TMEM25;nc|ENSG00000149582|Q86YD3-4|TMEM25;ENSG00000149582|ENST00000313236|TMEM25;ENST00000524522.5_1_11:118402605-118405292:+|nuORF	ENST00000533627.5_1_11:118404537-118405292:+|nuORF	ENST00000533627.5_1_11:118404537-118405292:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8694458007812	2	619.870028	1237.7255	0.15333	9.5048E-05	-0.88318	-0.00054745	-0.72984	-0.00045241	619.869172024736	90.678	1.0745	90.769	89.847	90.921	0.090675					164	83	3	0	0	0	0.41168	1	23908	23908		1.3295	0.13619	1	272210			18659	4880	10568	10569	23548	23548					0.11614974819917734
KLNPNFLQL	9	Unmodified	_KLNPNFLQL_					0	0	0		nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4;CNOT4|p.Q426Lfs*90|1|0.03|ENSG00000080802|chr7:135394268-135394269|-/TCCACGCAATA|frameshift_variant	nc|ENSG00000080802|O95628-3|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2346801757812	2	543.818941	1085.62333	0.47496	0.00025829	-0.079826	-4.3411E-05	0.39514	0.00021488	543.8188951179353	62.124	0.97157	62.124	61.836	62.807	0					73	35	3	0	0	0	0.18123	1	15303	15303		27.629	11.782	1	359560			18660	1165	10569	10570	23549	23549					0.08394308748324875
KLNPNFLQL	9	Unmodified	_KLNPNFLQL_					0	0	0		nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4;CNOT4|p.Q426Lfs*90|1|0.03|ENSG00000080802|chr7:135394268-135394269|-/TCCACGCAATA|frameshift_variant	nc|ENSG00000080802|O95628-3|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2348022460938	2	543.818941	1085.62333	0.41323	0.00022472	-0.094003	-5.1121E-05	0.31922	0.0001736	543.8189142921818	62.111	0.79267	62.208	61.896	62.689	0.096985					77	28	4	0	0	0	0.14961	1	15277	15277		34.402	34.402	1	456900			18661	1165	10569	10570	23550	23550					0.08394308748324875
KLNPNFLQL	9	Unmodified	_KLNPNFLQL_					0	0	0		nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4;CNOT4|p.Q426Lfs*90|1|0.03|ENSG00000080802|chr7:135394268-135394269|-/TCCACGCAATA|frameshift_variant	nc|ENSG00000080802|O95628-3|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2349243164062	2	543.818941	1085.62333	0.52237	0.00028408	-0.21542	-0.00011715	0.30695	0.00016693	543.818849081779	62.093	1.056	62.084	61.675	62.731	-0.0085564					79	38	3	0	0	0	0.13898	1	15339	15339		29.082	29.082	1	410930			18662	1165	10569	10570	23551	23551					0.08394308748324875
KLNPSCLCHQ	10	Unmodified	_KLNPSCLCHQ_					0	0	0			REV__ENST00000571101.5_1_16:3355511-3366938:+|nuORF	REV__ENST00000571101.5_1_16:3355511-3366938:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7764282226562	2	571.775893	1141.53723	-0.0024356	-1.3926E-06	0.16464	9.4134E-05	0.1622	9.2742E-05	571.7757814268217	25.668	0.50772	25.646	25.416	25.923	-0.022236					42	17	3	0	0	0	0.31876	1	4100	4100		7.1017	0.89594	1	337670	+		18663	21694	10570	10571	23552	23552					-0.02787342420378991
KLNQNDQLL	9	Unmodified	_KLNQNDQLL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-4|UTRN;nc|ENSG00000152818|P46939-3|UTRN;UTRN|p.L2902_S2903insKKQTHFYSYL|1|0.08|ENSG00000152818|chr6:144781991-144781992|-/TTTAAAGAAACAAACACATTTCTATTCTTA|inframe_insertion	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3009033203125	2	543.301113	1084.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.957	1	13.891	13.391	14.391	-0.066068								0	0	0	0.25331	1	579	579		5.2969	0.066215	1				18664	5043	10571	10572	23553	23553					0.04876226500641678
KLNWFLKK	8	Unmodified	_KLNWFLKK_					0	0	0		ENST00000400324.8_1_13:60240656-60240770:-|nuORF	ENST00000400324.8_1_13:60240656-60240770:-|nuORF	ENST00000400324.8_1_13:60240656-60240770:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.833984375	2	538.834394	1075.65424	0.14611	7.8729E-05	-1.2664	-0.00068238	-1.1203	-0.00060365	538.833578090671	12.38	0.40339	12.284	12.148	12.552	-0.096606					20	13	3	0	0	0	0.34353	1	116	116		4.756	0	1	82246			18665	10185	10572	10573	23554	23554					0.11943506853208419
KLPANHPLL	9	Unmodified	_KLPANHPLL_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7976379394531	2	501.808377	1001.6022	0.44465	0.00022313	-0.090951	-4.564E-05	0.3537	0.00017749	501.8082640196985	31.949	0.75521	31.949	31.745	32.5	0					45	26	2	0	0	0	0.013258	2	6027	6027;6044		74.423	40.32	1	585790			18666	2575	10573	10574	23555;23556	23555					0.10146343439475913
KLPANHPLL	9	Unmodified	_KLPANHPLL_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.79754638671875	2	501.808377	1001.6022	0.49741	0.0002496	-0.044855	-2.2509E-05	0.45255	0.0002271	501.80825696748633	31.871	0.7844	31.913	31.737	32.521	0.042364					42	27	2	0	0	0	0.017391	2	6008	6008;6034		68.081	37.856	1	692420			18667	2575	10573	10574	23557;23558	23557					0.10146343439475913
KLPANHPLL	9	Unmodified	_KLPANHPLL_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.8087158203125	2	501.808377	1001.6022	0.36925	0.00018529	0.070092	3.5173E-05	0.43934	0.00022047	501.80833337669975	31.871	0.81718	31.912	31.722	32.539	0.040991					46	28	2	0	0	0	0.0061338	2	6018	5965;6018		85.357	38.436	1	562830			18668	2575	10573	10574	23559;23560	23560					0.10146343439475913
KLPDVYGVF	9	Unmodified	_KLPDVYGVF_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2871704101562	2	519.286943	1036.55933	0.62166	0.00032282	-0.20625	-0.00010711	0.41541	0.00021572	519.2868771317803	64.491	0.61995	64.491	64.238	64.858	0					56	22	3	0	0	0	0.0079761	2	16021	16021;16072		82.529	48.427	1	1571100			18669	8566	10574	10575	23561;23562	23561					0.042515285913850676
KLPDVYGVF	9	Unmodified	_KLPDVYGVF_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2871704101562	2	519.286943	1036.55933	0.50987	0.00026477	-0.074025	-3.844E-05	0.43585	0.00022633	519.2869309971228	64.397	0.7093	64.49	64.17	64.88	0.09288					61	25	4	0	0	0	0.018449	2	15978	15978;16025		66.457	39.573	1	1437100			18670	8566	10574	10575	23563;23564	23563					0.042515285913850676
KLPDVYGVF	9	Unmodified	_KLPDVYGVF_					0	0	0		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.287109375	2	519.286943	1036.55933	0.50365	0.00026154	0.023031	1.196E-05	0.52668	0.0002735	519.2869188129109	64.471	0.76675	64.462	64.231	64.998	-0.0095291					69	27	4	0	0	0	0.018449	2	16011	16011;16060		66.457	44.71	1	1616200			18671	8566	10574	10575	23565;23566	23565					0.042515285913850676
KLPGKIHLF	9	Unmodified	_KLPGKIHLF_					0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2658081054688	2	526.834394	1051.65424	0.32522	0.00017134	-0.2792	-0.00014709	0.046026	2.4248E-05	527.3356816818215	41.352	0.43241	41.442	41.106	41.539	0.090248					33	15	3	0	0	0	0.22596	1	8901	8901		21.747	10.923	1	1149800			18672	4099	10575	10576	23567	23567					0.13047506853217783
KLPGKIHLF	9	Unmodified	_KLPGKIHLF_					0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8344116210938	2	526.834394	1051.65424	0.46037	0.00024254	-0.134	-7.0593E-05	0.32637	0.00017194	526.8343552937048	41.277	0.38309	41.374	41.065	41.448	0.096622					29	13	3	0	0	0	0.22188	1	8863	8863		20.454	5.6154	1	550570			18673	4099	10575	10576	23568	23568					0.13047506853217783
KLPHLQFLEL	10	Unmodified	_KLPHLQFLEL_					0	0	0		ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	ENSG00000198799|ENST00000361127|LRIG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8694458007812	2	619.368798	1236.72304	0.37078	0.00022965	1.7351	0.0010747	2.1059	0.0013043	619.370569418945	91.757	1.4647	91.757	91.303	92.768	0.00046539					206	95	3	0	0	0	0.38515	1	24481	24481		6.2058	0	1	1022300			18674	8129	10576	10577	23569	23569					0.11415126362294359
KLPKLLMMV	9	Unmodified	_KLPKLLMMV_					0	0	0			REV__ENST00000467434.5_1_9:115216373-115221761:+|nuORF	REV__ENST00000467434.5_1_9:115216373-115221761:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.8603515625	2	536.834691	1071.65483	0.56729	0.00030454	0.12026	6.456E-05	0.68755	0.0003691	536.8347996020586	53.014	0.5095	53.014	52.849	53.358	0					32	18	2	0	0	0	0.25202	1	12581	12581		10.824	0.75	1	364410	+		18675	21298	10577	10578	23570	23570					0.12186842186406466
KLPKLLMMV	9	Unmodified	_KLPKLLMMV_					0	0	0			REV__ENST00000467434.5_1_9:115216373-115221761:+|nuORF	REV__ENST00000467434.5_1_9:115216373-115221761:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.8604125976562	2	536.834691	1071.65483	0.64338	0.00034539	-0.03011	-1.6164E-05	0.61327	0.00032923	536.8347155471193	53.027	0.5251	53.083	52.854	53.379	0.056255					26	18	2	0	0	0	0.25622	1	12567	12567		1.6526	0	1	364860	+		18676	21298	10577	10578	23571	23571					0.12186842186406466
KLPKLPFQQF	10	Unmodified	_KLPKLPFQQF_					0	0	0		ENST00000499178.2_1_4:100010392-100023551:+|nuORF	ENST00000499178.2_1_4:100010392-100023551:+|nuORF	ENST00000499178.2_1_4:100010392-100023551:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.91778564453125	3	415.916653	1244.72813	-0.28186	-0.00011723	0.18152	7.5496E-05	-0.10034	-4.1733E-05	415.91679055264245	35.253	1.7785	35.329	34.522	36.301	0.075302					138	64	4	0	0	0	0.20278	2	7131	7055;7131		21.59	0	1	792330			18677	11259	10578	10579	23572;23573	23573					0.11555430224871088
KLPKLPFQQF	10	Unmodified	_KLPKLPFQQF_					0	0	0		ENST00000499178.2_1_4:100010392-100023551:+|nuORF	ENST00000499178.2_1_4:100010392-100023551:+|nuORF	ENST00000499178.2_1_4:100010392-100023551:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.91571044921875	3	415.916653	1244.72813	-0.45881	-0.00019083	0.63625	0.00026463	0.17743	7.3798E-05	415.91700824031767	35.315	1.8486	35.392	34.363	36.211	0.077377					147	66	4	0	0	0	0.21644	1	7035	7035		20.581	0	1	766280			18678	11259	10578	10579	23574	23574					0.11555430224871088
KLPKVCSQ	8	Unmodified	_KLPKVCSQ_					0	0	0			REV__nc|ENSG00000115419|O94925-3|GLS	REV__nc|ENSG00000115419|O94925-3|GLS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.2346496582031	2	451.760038	901.505523	-0.086507	-3.908E-05	-0.18606	-8.4056E-05	-0.27257	-0.00012314	451.7597019053332	15.333	0.37691	15.333	15.181	15.557	0					21	12	2	0	0	0	0.34414	1	1017	1017		2.0598	2.0598	1	51658	+		18679	22960	10579	10580	23575	23575					0.0508303288801244
KLPKVCSQL	9	Unmodified	_KLPKVCSQL_					0	0	0			REV__nc|ENSG00000115419|O94925-3|GLS	REV__nc|ENSG00000115419|O94925-3|GLS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.78155517578125	2	508.30207	1014.58959	0.10937	5.5593E-05	-2.6	-0.0013216	-2.4906	-0.001266	508.8029989724017	33.528	0.29749	33.594	33.441	33.739	0.066704					15	10	2	0	0	0	0.24688	1	6529	6529		14.838	0	1	174850	+		18680	22960	10580	10581	23576	23576					0.08287563984913504
KLPRHIRKAK	10	Unmodified	_KLPRHIRKAK_					0	0	0			REV__ENST00000514352.5_1_4:91234111-91389506:+|nuORF	REV__ENST00000514352.5_1_4:91234111-91389506:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.059326171875	2	623.914573	1245.81459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.63	1	103.64	103.14	104.14	0.0082703								0	0	0	0.38202	1	27537	27537		0.40072	0	1		+		18681	21835	10581	10582	23577	23577					0.2015185457012194
KLPSNLPQL	9	Unmodified	_KLPSNLPQL_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1;ENST00000504975.1_1_4:76911880-76912009:-|nuORF;SDAD1|p.E120Nfs*23|1|0.27|ENSG00000198301|chr4:75977693-75977693|C/-|frameshift_variant	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.3058166503906	2	505.305667	1008.59678	0.35535	0.00017956	-0.12221	-6.1753E-05	0.23314	0.00011781	505.3055324728471	52.481	0.85693	52.481	52.049	52.906	0					65	30	3	0	0	0	0.048637	1	12361	12361		53.404	7.3831	1	1224000			18682	8062	10582	10583	23578	23578					0.09282619856992369
KLPSNLPQL	9	Unmodified	_KLPSNLPQL_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1;ENST00000504975.1_1_4:76911880-76912009:-|nuORF;SDAD1|p.E120Nfs*23|1|0.27|ENSG00000198301|chr4:75977693-75977693|C/-|frameshift_variant	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2770080566406	2	505.305667	1008.59678	0.36332	0.00018359	0.032052	1.6196E-05	0.39537	0.00019978	505.3057066298339	52.402	0.95165	52.453	51.955	52.907	0.050571					73	34	3	0	0	0	0.1558	1	12357	12357		41.956	3.9816	1	1053500			18683	8062	10582	10583	23579	23579					0.09282619856992369
KLPSNLPQL	9	Unmodified	_KLPSNLPQL_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1;ENST00000504975.1_1_4:76911880-76912009:-|nuORF;SDAD1|p.E120Nfs*23|1|0.27|ENSG00000198301|chr4:75977693-75977693|C/-|frameshift_variant	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2773132324219	2	505.305667	1008.59678	0.20609	0.00010414	0.056651	2.8626E-05	0.26275	0.00013277	505.305684141931	52.524	1.2486	52.524	51.902	53.151	-0.00080872					83	45	3	0	0	0	0.10058	1	12288	12288		53.833	13.875	1	1309200			18684	8062	10582	10583	23580	23580					0.09282619856992369
KLPVKPGKRRL	11	Unmodified	_KLPVKPGKRRL_					0	0	0			REV__ENST00000535664.5_1_12:65720686-65847531:+|nuORF	REV__ENST00000535664.5_1_12:65720686-65847531:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.437255859375	2	646.437881	1290.86121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.99	1	115.99	115.49	116.49	0								0	0	0	0.38203	1	30047	30047		0.30703	0.30703	1		+		18685	22071	10583	10584	23581	23581					0.22741294401407686
KLQEKEELIS	10	Unmodified	_KLQEKEELIS_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;GOLGB1|p.Q2276Gfs*3|1|0.05|ENSG00000173230|chr3:121692520-121692524|TCTGC/-|frameshift_variant	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.84765625	2	608.84281	1215.67107	0.61796	0.00037624	3.4871	0.0021231	4.1051	0.0024993	609.3437592551629	83.07	0.69901	83.07	82.756	83.455	0					70	26	4	0	0	0	0.40085	1	21689	21689		6.2058	2.9245	1	552830			18686	6706	10584	10585	23582	23582					0.07185918157847482
KLQELIEMDLK	11	Unmodified	_KLQELIEMDLK_					0	0	0			REV__nc|ENSG00000095596|O43174-2|CYP26A1	REV__nc|ENSG00000095596|O43174-2|CYP26A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.92352294921875	3	453.923256	1358.74794	0.28863	0.00013102	-0.058705	-2.6647E-05	0.22993	0.00010437	453.92339412702427	29.834	1.3191	29.834	29.355	30.674	0					149	46	5	0	0	0	0.34327	2	5358	5358;5407		18.34	2.6677	1	2499900	+		18687	14105	10585	10586	23583;23584	23583					0.08291393382683054
KLQKEQPLA	9	Unmodified	_KLQKEQPLA_					0	0	0			REV__ENST00000597544.5_1_19:53683054-53696636:-|nuORF	REV__ENST00000597544.5_1_19:53683054-53696636:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3192749023438	2	527.816399	1053.61824	0.29094	0.00015356	1.4921	0.00078755	1.783	0.00094111	528.318958566159	19.041	0.7577	19.041	18.79	19.547	0					69	26	4	0	0	0	0.30064	1	2104	2104		8.7454	0	1	263560	+		18688	22601	10586	10587	23585	23585					0.09358004885712035
KLQMMTLTF	9	Unmodified	_KLQMMTLTF_					0	0	0			REV__ENST00000428210.5_1_2:61720980-61752425:-|nuORF	REV__ENST00000428210.5_1_2:61720980-61752425:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2711181640625	2	556.795763	1111.57697	0.36381	0.00020257	0.23225	0.00012932	0.59606	0.00033188	557.2974413431145	29.549	0.61511	29.561	29.302	29.917	0.012266					36	20	3	0	0	0	0.25938	1	5370	5370		4.3292	0	1	193200	+		18689	13926	10587	10588	23586	23586					0.02564784530363795
KLQPKCTI	8	Unmodified	_KLQPKCTI_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7774658203125	2	465.775688	929.536823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.97	1	72.94	72.44	73.44	-0.029305								0	0	0	0.35663	1	18613	18613		11.64	0.81637	1		+		18690	22330	10588	10589	23587	23587					0.06923605922111165
KLRAYKAAARL	11	Unmodified	_KLRAYKAAARL_					0	0	0			REV__ENST00000356387.6_1_7:102088095-102088605:+|nuORF	REV__ENST00000356387.6_1_7:102088095-102088605:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.934814453125	3	420.934818	1259.78262	0.096683	4.0697E-05	0.075754	3.1887E-05	0.17244	7.2585E-05	420.93478346432465	31.966	1.3836	32.007	31.672	33.055	0.040991					132	49	4	0	0	0	0.45422	1	6005	6005		4.1166	0.2403	1	1055400	+		18691	20200	10589	10590	23588	23588					0.16312442096295854
KLRDFVFWRKK	11	Unmodified	_KLRDFVFWRKK_					0	0	0			REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF	REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8161926269531	3	508.305022	1521.89324	0.12585	6.3968E-05	-3.6701	-0.0018655	-3.5443	-0.0018016	508.6373284868905	40.973	0.10773	40.973	40.902	41.01	0					5	3	2	0	0	0	0.33336	1	8786	8786		1.1098	0.96986	1	32678	+		18692	13457	10590	10591	23589	23589					0.1531666208450133
KLRDTADGTFL	11	Unmodified	_KLRDTADGTFL_					0	0	0		ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;ENST00000518292.1_1_5:67586526-67589028:+|nuORF	ENSG00000145675|ENST00000521381|PIK3R1;ENST00000518292.1_1_5:67586526-67589028:+|nuORF	ENST00000518292.1_1_5:67586526-67589028:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2394104003906	3	412.890944	1235.651	0.024981	1.0314E-05	0.31457	0.00012988	0.33955	0.0001402	412.89102389033457	49.062	0.45461	49.094	48.929	49.383	0.032043					18	15	2	0	0	0	0.33064	1	11244	11244		2.8433	0	1	98689			18693	4662;11443	10591	10592	23590	23590					0.042601672178761874
KLRELLLKTKE	11	Unmodified	_KLRELLLKTKE_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.96343994140625	3	457.629172	1369.86569	0.19267	8.8172E-05	-0.57321	-0.00026232	-0.38054	-0.00017415	457.62891289854764	30.131	0.50273	30.131	29.945	30.448	0					39	17	4	0	0	0	0.46704	1	5499	5499		2.4348	0	1	222950	+		18694	17948	10592	10593	23591	23591					0.19554714033642995
KLRELLLKTKE	11	Unmodified	_KLRELLLKTKE_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	457.629172	1369.86569	0.19267	8.8172E-05	-0.57321	-0.00026232	-0.38054	-0.00017415	457.62891289854764	30.131	0.50273	30.131	29.945	30.448	0	-0.041483	-3.4793E-05	NaN	2.4348	39	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222950	+		18695	17948	10592	10593							0.19554714033642995
KLRELLLKTKE	11	Unmodified	_KLRELLLKTKE_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	457.629172	1369.86569	0.19876	9.096E-05	-0.7179	-0.00032853	-0.51914	-0.00023757	457.6288263668128	30.184	0.58838	30.212	29.992	30.58	0.027946	0.039855	-0.00023343	NaN	2.4348	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223790	+		18696	17948	10592	10593							0.19554714033642995
KLRELLLKTKE	11	Unmodified	_KLRELLLKTKE_					0	0	0			REV__ENSG00000176771|ENST00000409261|NCKAP5	REV__ENSG00000176771|ENST00000409261|NCKAP5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	457.629172	1369.86569	-0.14719	-6.736E-05	-0.29416	-0.00013462	-0.44135	-0.00020198	457.6289423412935	30.147	0.59828	30.174	29.956	30.555	0.027157	0.0016272	0.00034831	NaN	2.4348	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235720	+		18697	17948	10592	10593							0.19554714033642995
KLRERFLPR	9	Unmodified	_KLRERFLPR_					0	0	0		ENST00000471393.1_1_8:54445924-54446098:+|nuORF	ENST00000471393.1_1_8:54445924-54446098:+|nuORF	ENST00000471393.1_1_8:54445924-54446098:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.9120178222656	3	405.58753	1213.74076	-0.20943	-8.4943E-05	-0.4955	-0.00020097	-0.70493	-0.00028591	405.5873169494683	24.899	0.85087	24.843	24.544	25.395	-0.055931					87	29	5	0	0	0	0.26063	1	3938	3938		3.8763	0	1	1009100			18698	10875	10593	10594	23592	23592					0.14243886407780337
KLRFPAEDEF	10	Unmodified	_KLRFPAEDEF_					0	0	0		ENST00000555770.1_1_14:103988551-103989144:-|nuORF;ENSG00000166165|ENST00000348956|CKB	ENST00000555770.1_1_14:103988551-103989144:-|nuORF	ENST00000555770.1_1_14:103988551-103989144:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.2431945800781	3	417.883789	1250.62954	0.29442	0.00012303	-2.7219	-0.0011374	-2.4274	-0.0010144	417.8826698928537	35.915	0.38416	35.997	35.849	36.233	0.082355					24	13	2	0	0	0	0.32051	1	7207	7207		3.8763	0	1	225650			18699	6037	10594	10595	23593	23593					0.014247821891558488
KLRFPAEDEF	10	Unmodified	_KLRFPAEDEF_					0	0	0		ENST00000555770.1_1_14:103988551-103989144:-|nuORF;ENSG00000166165|ENST00000348956|CKB	ENST00000555770.1_1_14:103988551-103989144:-|nuORF	ENST00000555770.1_1_14:103988551-103989144:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	417.883789	1250.62954	0.072598	3.0338E-05	-2.9353	-0.0012266	-2.8627	-0.0011963	417.88277254342796	36.094	0.3996	36.094	35.907	36.307	0	0.043556	-0.00013404	NaN	3.8763	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175110			18700	6037	10594	10595							0.014247821891558488
KLRFTLEF	8	Unmodified	_KLRFTLEF_					0	0	0			REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2722778320312	2	527.30821	1052.60187	0.59876	0.00031573	-0.36679	-0.00019341	0.23197	0.00012232	527.8095082352455	46.111	0.3343	46.111	45.86	46.194	0					16	11	2	0	0	0	0.3366	1	10370	10370		18.135	0	1	133690	+		18701	14571	10595	10596	23594	23594					0.07766923719623264
KLRNLCLDWL	10	Unmodified	_KLRNLCLDWL_					0	0	0		ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-3|PEG3	ENSG00000198300|ENST00000326441|PEG3	ENSG00000198300|ENST00000326441|PEG3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.8292846679688	2	637.357908	1272.70126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.668	1	94.668	94.168	95.168	0								0	0	0	0.38166	1	25254	25254		1.4819	0.15237	1				18702	8061	10596	10597	23595	23595					0.07581998342038787
KLRRLEELLQ	10	Unmodified	_KLRRLEELLQ_					0	0	0			REV__nc|ENSG00000127838|Q8N490-4|PNKD	REV__nc|ENSG00000127838|Q8N490-4|PNKD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.386962890625	2	649.401161	1296.78777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.973	1	95.056	94.556	95.556	0.082779								0	0	0	0.38166	1	25351	25351		1.4819	0	1		+		18703	15352	10597	10598	23596	23596					0.15124701168269894
KLRRLEELLQ	10	Unmodified	_KLRRLEELLQ_					0	0	0			REV__nc|ENSG00000127838|Q8N490-4|PNKD	REV__nc|ENSG00000127838|Q8N490-4|PNKD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.3878173828125	2	649.401161	1296.78777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.971	1	94.969	94.469	95.469	-0.0020142								0	0	0	0.38166	1	25355	25355		1.4819	0	1		+		18704	15352	10597	10598	23597	23597					0.15124701168269894
KLRRLEELLQ	10	Unmodified	_KLRRLEELLQ_					0	0	0			REV__nc|ENSG00000127838|Q8N490-4|PNKD	REV__nc|ENSG00000127838|Q8N490-4|PNKD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.3875732421875	2	649.401161	1296.78777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.102	1	95.1	94.6	95.6	-0.0020142								0	0	0	0.38166	1	25395	25395		1.4819	0	1		+		18705	15352	10597	10598	23598	23598					0.15124701168269894
KLRRREKEP	9	Unmodified	_KLRRREKEP_					0	0	0			REV__ENST00000489932.2_1_9:139258756-139262364:-|nuORF	REV__ENST00000489932.2_1_9:139258756-139262364:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3718872070312	2	606.370195	1210.72584	0.061155	3.7082E-05	0.66221	0.00040155	0.72337	0.00043863	606.3705568011769	113.03	0.45003	113.03	112.87	113.32	0					74	56	2	0	0	0	0.35734	1	29366	29366		0	0	1	48777	+		18706	18522	10598	10599	23599	23599					0.12890394539772387
KLRVIHSPIQR	11	Unmodified	_KLRVIHSPIQR_					0	0	0			REV__nc|ENSG00000174628|Q8N0W5-2|IQCK	REV__nc|ENSG00000174628|Q8N0W5-2|IQCK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2506408691406	3	449.617489	1345.83064	0.26782	0.00012042	-0.59131	-0.00026586	-0.32349	-0.00014545	449.6171502324634	24.025	0.65496	23.986	23.651	24.306	-0.038927					46	22	3	0	0	0	0.33316	1	3628	3628		2.084	0.62885	1	70559	+		18707	17846	10599	10600	23600	23600					0.17155516016350703
KLRVIHSPIQR	11	Unmodified	_KLRVIHSPIQR_					0	0	0			REV__nc|ENSG00000174628|Q8N0W5-2|IQCK	REV__nc|ENSG00000174628|Q8N0W5-2|IQCK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	449.617489	1345.83064	0.07159	3.2188E-05	-0.35987	-0.0001618	-0.28828	-0.00012962	449.9515935276084	23.822	0.57227	23.822	23.513	24.085	0	-0.097254	0.00018953	NaN	2.084	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59978	+		18708	17846	10599	10600							0.17155516016350703
KLSAGRIPPWK	11	Unmodified	_KLSAGRIPPWK_					0	0	0		ENST00000465381.5_1_20:13514760-13610725:-|nuORF	ENST00000465381.5_1_20:13514760-13610725:-|nuORF	ENST00000465381.5_1_20:13514760-13610725:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.55804443359375	3	418.255669	1251.74518	-0.14083	-5.8904E-05	-0.54321	-0.0002272	-0.68405	-0.00028611	418.2553731238755	15.427	0.38731	15.363	15.158	15.545	-0.064413					35	12	4	0	0	0	0.3322	1	1019	1019		4.7159	0.83959	1	160370			18709	10796	10600	10601	23601	23601					0.12937350830657124
KLSEIKMIRK	10	Unmodified	_KLSEIKMIRK_					0	0	0			REV__ENST00000424123.7_3_17:65908153-65908222:+|nuORF	REV__ENST00000424123.7_3_17:65908153-65908222:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.9017333984375	3	415.928564	1244.76386	-0.015447	-6.4249E-06	-1.7856	-0.00074269	-1.8011	-0.00074911	415.9276187988436	28.874	0.56721	28.874	28.522	29.089	0					44	19	4	0	0	0	0.31746	1	5077	5077		7.0371	0.41363	1	162590	+		18710	20888	10601	10602	23602	23602					0.15127144410234905
KLSEYFTSFER	11	Unmodified	_KLSEYFTSFER_					0	0	0			REV__ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	REV__ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.9591369628906	3	469.56987	1405.68778	0.046709	2.1933E-05	-0.55899	-0.00026248	-0.51228	-0.00024055	469.56967189201845	91.268	0.70314	91.268	91.124	91.827	0					123	53	3	0	0	0	0.33334	1	24368	24368		1.2148	0.4383	1	405120	+		18711	13117	10602	10603	23603	23603					0.0011641904377484025
KLSGKLWSA	9	Unmodified	_KLSGKLWSA_					0	0	0		ENST00000595684.5_1_19:17660373-17660589:+|nuORF	ENST00000595684.5_1_19:17660373-17660589:+|nuORF	ENST00000595684.5_1_19:17660373-17660589:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2925109863281	2	495.292559	988.570566	0.52311	0.00025909	-1.2053	-0.00059698	-0.6822	-0.00033789	495.2922373169293	20.155	0.44633	20.039	19.786	20.232	-0.11592					62	15	5	0	0	0	0.2719	1	2466	2466		13.042	1.4022	1	157860			18712	12225	10603	10604	23604	23604					0.0758235068550448
KLSKQNKDKN	10	Unmodified	_KLSKQNKDKN_					0	0	0			REV__ENST00000287701.14_1_8:28909287-28909479:+|nuORF	REV__ENST00000287701.14_1_8:28909287-28909479:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.3695678710938	2	601.846219	1201.67788	0.22011	0.00013247	0.17986	0.00010825	0.39997	0.00024072	601.8463122184834	12.484	0.13928	12.388	12.324	12.463	-0.096607					7	4	2	0	0	0	0.32101	1	150	150		2.4985	1.3051	1	30408	+		18713	19738	10604	10605	23605	23605					0.08511275829073384
KLSLHGLNA	9	Unmodified	_KLSLHGLNA_					0	0	0			REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.77349853515625	2	476.782359	951.550165	-0.50582	-0.00024117	0.53542	0.00025528	0.029595	1.411E-05	476.78252187407276	34.346	0.30486	34.413	34.29	34.595	0.06636					15	10	2	0	0	0	0.25112	1	6802	6802		16.149	3.9084	1	63436	+		18714	17505	10605	10606	23606	23606					0.07245180025688569
KLSLVMRPCR	10	Unmodified	_KLSLVMRPCR_					0	0	0			REV__ENST00000526952.1_2_11:33789164-33793404:-|nuORF	REV__ENST00000526952.1_2_11:33789164-33793404:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.36962890625	2	601.846653	1201.67875	-0.076327	-4.5937E-05	-0.2697	-0.00016232	-0.34603	-0.00020826	601.8464596913909	12.512	0.20289	12.444	12.345	12.548	-0.06806					11	6	3	0	0	0	0.32132	1	157	157		1.4819	0.28856	1	32987	+		18715	14670	10606	10607	23607	23607					0.08598075672762207
KLSNLWLKEI	10	Unmodified	_KLSNLWLKEI_					0	0	0		ENST00000542921.5_1_10:65024475-65028460:-|nuORF	ENST00000542921.5_1_10:65024475-65028460:-|nuORF	ENST00000542921.5_1_10:65024475-65028460:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.9161682128906	3	415.251813	1242.73361	-0.059672	-2.4779E-05	-1.0117	-0.0004201	-1.0713	-0.00044487	415.2513998743994	35.573	0.58028	35.573	35.276	35.856	0					31	20	2	0	0	0	0.31651	1	7079	7079		11.518	0	1	301920			18716	11736	10607	10608	23608	23608					0.12195109016715833
KLSNVSRLP	9	Unmodified	_KLSNVSRLP_					0	0	0			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.80072021484375	2	507.308741	1012.60293	0.16611	8.4269E-05	0.19461	9.8726E-05	0.36072	0.000183	507.30879080791664	26.11	0.29047	26.11	25.981	26.271	0					15	9	2	0	0	0	0.26031	1	4293	4293		3.5965	0	1	45680	+		18717	17006	10608	10609	23609	23609					0.0971313808852301
KLSQLNVKIG	10	Unmodified	_KLSQLNVKIG_					0	0	0			REV__nc|ENSG00000187398|Q86TE4-3|LUZP2	REV__nc|ENSG00000187398|Q86TE4-3|LUZP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3452758789062	2	550.345323	1098.67609	0.18215	0.00010025	-0.0020169	-1.11E-06	0.18013	9.9136E-05	550.3453471065585	12.244	0.26863	12.147	12	12.268	-0.096607					18	10	2	0	0	0	0.41168	1	80	80		1.3295	0	1	41760	+		18718	18504	10609	10610	23610	23610					0.13070266811109832
KLTGKLKLP	9	Unmodified	_KLTGKLKLP_					0	0	0		ENST00000503555.5_1_4:41179674-41209862:-|nuORF	ENST00000503555.5_1_4:41179674-41209862:-|nuORF	ENST00000503555.5_1_4:41179674-41209862:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.3059387207031	2	499.342052	996.669552	0.24781	0.00012374	-0.17695	-8.8358E-05	0.070855	3.5381E-05	499.3419703237973	19.305	0.40498	19.249	19.08	19.485	-0.055693					22	13	2	0	0	0	0.25622	1	2203	2203		7.2892	1.5574	1	62583			18719	11293	10610	10611	23611	23611					0.1710837365039879
KLTSRRGTV	9	Unmodified	_KLTSRRGTV_					0	0	0			REV__ENST00000453008.2_1_2:88927430-88927487:+|nuORF	REV__ENST00000453008.2_1_2:88927430-88927487:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3119812011719	2	509.311815	1016.60908	0.47573	0.00024229	0.060555	3.0842E-05	0.53628	0.00027314	509.31172967132346	84.179	1.0765	84.162	83.837	84.913	-0.016823					124	45	4	0	0	0	0.28674	1	22042	22042		10.824	10.824	1	2591700	+		18720	21132	10611	10612	23612	23612					0.10143656320053651
KLTSRRGTV	9	Unmodified	_KLTSRRGTV_					0	0	0			REV__ENST00000453008.2_1_2:88927430-88927487:+|nuORF	REV__ENST00000453008.2_1_2:88927430-88927487:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	509.311815	1016.60908	0.56779	0.00028918	-0.18147	-9.2422E-05	0.38633	0.00019676	509.3116219661852	84.273	1.315	84.273	83.859	85.174	0	0.055811	-0.00014528	NaN	10.824	121	51	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2485700	+		18721	21132	10611	10612							0.10143656320053651
KLTSRRGTV	9	Unmodified	_KLTSRRGTV_					0	0	0			REV__ENST00000453008.2_1_2:88927430-88927487:+|nuORF	REV__ENST00000453008.2_1_2:88927430-88927487:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	509.311815	1016.60908	0.48902	0.00024906	-0.020775	-1.0581E-05	0.46824	0.00023848	509.3116785746644	84.139	1.2523	84.216	83.873	85.125	0.077095	-0.00083062	1.84E-05	NaN	10.824	115	49	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1952900	+		18722	21132	10611	10612							0.10143656320053651
KLTSSIAIL	9	Unmodified	_KLTSSIAIL_					0	0	0			REV__nc|ENSG00000175221|Q9Y2X0-2|MED16	REV__nc|ENSG00000175221|Q9Y2X0-2|MED16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.3027038574219	2	473.302593	944.590633	0.50259	0.00023788	-0.068878	-3.26E-05	0.43371	0.00020528	473.3024111638287	55.665	0.48871	55.736	55.501	55.989	0.070885					40	17	3	0	0	0	0.20626	1	13315	13315		22.736	1.1993	1	793860	+		18723	17881	10612	10613	23613	23613					0.1161210162547377
KLTTTIGKL	9	Unmodified	_KLTTTIGKL_					0	0	0		nc|ENSG00000147257|P51654-2|GPC3;ENSG00000147257|ENST00000370818|GPC3	nc|ENSG00000147257|P51654-2|GPC3	nc|ENSG00000147257|P51654-2|GPC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.3027648925781	2	487.815867	973.617182	0.44874	0.0002189	-0.93979	-0.00045844	-0.49105	-0.00023954	487.8152742849448	29.654	0.4199	29.654	29.413	29.833	0					29	14	3	0	0	0	0.25706	1	5363	5363		6.7232	0	1	98013			18724	4758	10613	10614	23614	23614					0.12931790516802266
KLTVFLLLY	9	Unmodified	_KLTVFLLLY_					0	0	0		ENST00000461696.1_1_3:15838765-15838891:-|nuORF	ENST00000461696.1_1_3:15838765-15838891:-|nuORF	ENST00000461696.1_1_3:15838765-15838891:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7972412109375	2	555.352086	1108.68962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112	1	112.02	111.52	112.52	0.0131								0	0	0	0.26704	1	29158	29158		0.6015	0	1				18725	10748	10614	10615	23615	23615					0.13962124590398162
KLTYIYIQK	9	Unmodified	_KLTYIYIQK_					0	0	0		ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.35009765625	2	585.350074	1168.6856	0.30809	0.00018034	-0.18037	-0.00010558	0.12772	7.4763E-05	585.3498578824846	38.468	0.73183	38.559	38.294	39.026	0.090881					69	26	4	0	0	0	0.0013864	1	8040	8040		117.84	3.6512	1	1210900			18726	10017	10615	10616	23616	23616					0.10800035096622196
KLTYIYIQK	9	Unmodified	_KLTYIYIQK_					0	0	0		ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.3502197265625	2	585.350074	1168.6856	0.42101	0.00024644	-0.10216	-5.9798E-05	0.31885	0.00018664	585.3499339636741	38.46	0.68974	38.558	38.294	38.984	0.097527					69	24	4	0	0	0	0.0045319	1	8052	8052		90.135	13.31	1	1038300			18727	10017	10615	10616	23617	23617					0.10800035096622196
KLTYIYIQK	9	Unmodified	_KLTYIYIQK_					0	0	0		ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	585.350074	1168.6856	0.060133	3.5199E-05	0.17603	0.00010304	0.23616	0.00013824	585.3500926312885	38.537	0.80068	38.537	38.239	39.04	0	-0.014673	0.00024624	NaN	117.84	70	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1199700			18728	10017	10615	10616							0.10800035096622196
KLVANCKTI	9	Unmodified	_KLVANCKTI_					0	0	0			REV__ENST00000555252.5_1_14:64855058-64907131:+|nuORF	REV__ENST00000555252.5_1_14:64855058-64907131:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.59423828125	2	495.294245	988.573937	0.22365	0.00011077	-0.20478	-0.00010143	0.01887	9.3463E-06	495.2940508091472	22.876	0.56858	22.831	22.409	22.977	-0.044867					30	19	2	0	0	0	0.259	1	3165	3165		5.2969	1.3525	1	86267	+		18729	22248	10616	10617	23618	23618					0.07919277467851771
KLVEYWEGNK	10	Unmodified	_KLVEYWEGNK_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.32958984375	2	633.32987	1264.64519	0.34608	0.00021918	-0.3566	-0.00022584	-0.010522	-6.6639E-06	633.3296695303036	67.633	0.62921	67.633	67.368	67.997	0					41	21	3	0	0	0	0.324	1	16999	16999		17.443	0	1	353000	+		18730	15035	10617	10618	23619	23619					0.02345068706222264
KLVLEPARY	9	Unmodified	_KLVLEPARY_					0	0	0			REV__ENSG00000006837|ENST00000265334|CDKL3	REV__ENSG00000006837|ENST00000265334|CDKL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2511596679688	2	544.826766	1087.63898	0.64949	0.00035386	-1.0476	-0.00057075	-0.39808	-0.00021689	545.327576885498	71.638	0.9733	71.695	71.513	72.486	0.056572					67	35	3	0	0	0	0.22061	1	18448	18448		24.021	9.1823	1	191420	+		18731	13376	10618	10619	23620	23620					0.09866595265361866
KLVRLPGLI	9	Unmodified	_KLVRLPGLI_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2799987792969	2	504.850045	1007.68554	0.57243	0.00028899	-0.026215	-1.3234E-05	0.54621	0.00027576	504.84994875439367	47.572	0.33406	47.572	47.411	47.745	0					19	11	2	0	0	0	0.25526	1	10845	10845		4.3292	0	1	157780			18732	1252	10619	10620	23621	23621					0.18200079887310494
KLVRLPGLI	9	Unmodified	_KLVRLPGLI_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2801208496094	2	504.850045	1007.68554	0.47119	0.00023788	0.21927	0.0001107	0.69046	0.00034858	504.85003799774313	47.521	0.42406	47.569	47.321	47.745	0.047523					21	15	2	0	0	0	0.25066	1	10809	10809		7.2892	2.96	1	217640			18733	1252	10619	10620	23622	23622					0.18200079887310494
KLVSRNESI	9	Unmodified	_KLVSRNESI_					0	0	0			REV__HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	REV__HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3041381835938	2	523.303655	1044.59276	0.30873	0.00016156	0.22359	0.000117	0.53232	0.00027856	523.3037208766506	22.051	0.84085	22.002	21.804	22.645	-0.049377					61	29	3	0	0	0	0.33508	1	3098	3098		3.5965	0	1	224350	+		18734	16164	10620	10621	23623	23623					0.07224530363282611
KLWIIQLFF	9	Unmodified	_KLWIIQLFF_					0	0	0			REV__UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant	REV__UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.5274658203125	3	403.24611	1206.7165	-0.56423	-0.00022752	2.7415	0.0011055	2.1773	0.00087799	403.2469481628435	12.547	0.20277	12.479	12.377	12.579	-0.06806					15	6	4	0	0	0	0.26145	1	136	136		2.7352	1.9587	1	45204	+		18735	23352	10621	10622	23624	23624					0.12141233201532486
KLWPRIILLS	10	Unmodified	_KLWPRIILLS_					0	0	0		ENST00000311066.9_1_1:14109046-14109127:+|nuORF	ENST00000311066.9_1_1:14109046-14109127:+|nuORF	ENST00000311066.9_1_1:14109046-14109127:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.2043151855469	3	413.604298	1237.79106	-0.03409	-1.41E-05	0.65365	0.00027035	0.61956	0.00025625	413.6045576310226	29.795	0.46696	29.808	29.653	30.12	0.013475					22	15	2	0	0	0	0.32165	1	5331	5331		0.69767	0	1	52821			18736	9313	10622	10623	23625	23625					0.18167996012948606
KLYDLDKGI	9	Unmodified	_KLYDLDKGI_					0	0	0			REV__SCN1A|p.A1622Pfs*3|1|0.23|ENSG00000144285|chr2:165992415-165992415|A/-|frameshift_variant	REV__SCN1A|p.A1622Pfs*3|1|0.23|ENSG00000144285|chr2:165992415-165992415|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2952270507812	2	532.802957	1063.59136	0.60632	0.00032305	-0.98268	-0.00052357	-0.37635	-0.00020052	532.8020273930036	36.035	0.33843	36.035	35.83	36.168	0					19	12	2	0	0	0	0.24924	1	7311	7311		14.405	1.5328	1	173670	+		18737	16225	10623	10624	23626	23626					0.062108962745242025
KLYDLDKGI	9	Unmodified	_KLYDLDKGI_					0	0	0			REV__SCN1A|p.A1622Pfs*3|1|0.23|ENSG00000144285|chr2:165992415-165992415|A/-|frameshift_variant	REV__SCN1A|p.A1622Pfs*3|1|0.23|ENSG00000144285|chr2:165992415-165992415|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	532.802957	1063.59136	0.59867	0.00031897	-0.11378	-6.0625E-05	0.48489	0.00025835	532.8027487094867	35.862	0.32246	35.949	35.762	36.085	0.08625	-0.043104	0.00061486	NaN	14.405	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137120	+		18738	16225	10623	10624							0.062108962745242025
KLYGITFQVF	10	Unmodified	_KLYGITFQVF_					0	0	0			REV__L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|29|2|sense	REV__L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|29|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.2070007324219	3	405.897258	1214.66995	-0.31161	-0.00012648	-1.8296	-0.00074265	-2.1412	-0.00086913	406.2304641942085	60.167	0.14062	60.155	60.057	60.198	-0.011486					5	4	2	0	0	0	0.32033	1	14696	14696		0.77653	0	1	100760	+		18739	22802	10624	10625	23627	23627					0.07119748579611951
KLYRNSFPLK	10	Unmodified	_KLYRNSFPLK_					0	0	0			REV__ENST00000480427.1_1_12:125420028-125420310:-|nuORF	REV__ENST00000480427.1_1_12:125420028-125420310:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.5946960449219	3	422.583674	1264.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.6	1	104.6	104.1	105.1	0.0018463								0	0	0	0.37807	1	27774	27774		1.4551	0.34536	1		+		18740	21474	10625	10626	23628	23628					0.10741644593804267
KLYVTTVI	8	Unmodified	_KLYVTTVI_					0	0	0			REV__ACER3|p.V258Dfs*8|1|0.05|ENSG00000078124|chr11:77020295-77020296|-/ATATCAGAGAGTATTTTTAT|frameshift_variant	REV__ACER3|p.V258Dfs*8|1|0.05|ENSG00000078124|chr11:77020295-77020296|-/ATATCAGAGAGTATTTTTAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.24322509765625	2	468.791861	935.569169	0.42722	0.00020028	-0.20894	-9.795E-05	0.21828	0.00010233	468.7918226367097	85.165	0.61864	85.152	84.862	85.48	-0.01284					38	24	2	0	0	0	0.34353	1	22258	22258		4.756	2.9118	1	247500	+		18741	13071	10626	10627	23629	23629					0.09880716596740058
KMAFLLVGI	9	Unmodified	_KMAFLLVGI_					0	0	0		nc|ENSG00000205359|Q86UG4-3|SLCO6A1;nc|ENSG00000205359|Q86UG4-2|SLCO6A1;ENSG00000205359|ENST00000506729|SLCO6A1	nc|ENSG00000205359|Q86UG4-3|SLCO6A1	nc|ENSG00000205359|Q86UG4-3|SLCO6A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.3042297363281	2	496.304081	990.59361	0.47767	0.00023707	-0.065784	-3.2649E-05	0.41189	0.00020442	496.3039220074158	72.104	1.8162	72.104	71.402	73.218	0					151	65	3	0	0	0	0.32733	1	18472	18472		4.756	0	1	1130700			18742	8286	10627	10628	23630	23630					0.09793653478641318
KMENFVVGK	9	Unmodified	_KMENFVVGK_					0	0	0			REV__nc|ENSG00000107959|Q5JRX3-3|PITRM1	REV__nc|ENSG00000107959|Q5JRX3-3|PITRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2836303710938	2	526.283877	1050.5532	0.63118	0.00033218	-0.27739	-0.00014599	0.35379	0.00018619	526.2835859309334	44.412	0.50768	44.412	44.176	44.684	0					31	18	2	0	0	0	0.11461	1	9836	9836		36.127	3.8215	1	764600	+		18743	14577	10628	10629	23631	23631					0.02994687088221326
KMENLLHHQHL	11	Unmodified	_KMENLLHHQHL_					0	0	0		ENST00000245441.9_2_14:51239689-51239749:-|nuORF	ENST00000245441.9_2_14:51239689-51239749:-|nuORF	ENST00000245441.9_2_14:51239689-51239749:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2611999511719	3	467.246956	1398.71904	-0.012346	-5.7687E-06	-0.27537	-0.00012867	-0.28772	-0.00013443	467.24683035004756	57.849	0.23485	57.849	57.718	57.953	0					12	8	2	0	0	0	0.40256	1	13973	13973		10.899	3.8619	1	188300			18744	8899	10629	10630	23632	23632					0.0356271359692073
KMFIVQIL	8	Unmodified	_KMFIVQIL_					0	0	0			REV__ENST00000361673.3_1_18:56247268-56247712:-|nuORF	REV__ENST00000361673.3_1_18:56247268-56247712:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3039245605469	2	496.304081	990.59361	0.50288	0.00024958	-0.36158	-0.00017945	0.14131	7.0131E-05	496.30373184629593	86.815	0.87142	86.81	86.414	87.285	-0.0056229					72	34	3	0	0	0	0.4419	1	22789	22789		8.5933	3.8373	1	432490	+		18745	20284	10630	10631	23633	23633					0.09793653478641318
KMFIVQIL	8	Unmodified	_KMFIVQIL_					0	0	0			REV__ENST00000361673.3_1_18:56247268-56247712:-|nuORF	REV__ENST00000361673.3_1_18:56247268-56247712:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	496.304081	990.59361	0.57955	0.00028763	-0.54512	-0.00027054	0.034431	1.7088E-05	496.3036746435249	86.788	0.72005	86.788	86.45	87.17	0	0.020688	-8.1136E-05	NaN	8.5933	71	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	593320	+		18746	20284	10630	10631							0.09793653478641318
KMFIVQIL	8	Unmodified	_KMFIVQIL_					0	0	0			REV__ENST00000361673.3_1_18:56247268-56247712:-|nuORF	REV__ENST00000361673.3_1_18:56247268-56247712:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	496.304081	990.59361	0.50288	0.00024958	-0.36158	-0.00017945	0.14131	7.0131E-05	496.30373184629593	86.815	0.87142	86.81	86.414	87.285	-0.0056229	0.042778	0.00010105	NaN	8.5933	72	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432490	+		18747	20284	10630	10631							0.09793653478641318
KMFLKSYRRWR	11	Unmodified	_KMFLKSYRRWR_					0	0	0		ENST00000448507.5_1_4:7033984-7034191:+|nuORF	ENST00000448507.5_1_4:7033984-7034191:+|nuORF	ENST00000448507.5_1_4:7033984-7034191:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3082275390625	3	524.297762	1569.87146	0.62489	0.00032763	0.60624	0.00031785	1.2311	0.00064548	524.2980517459868	57.068	0.57776	57.068	56.772	57.35	0					53	21	3	0	0	0	0.46842	1	13777	13777		2.2527	1.7468	1	607420			18748	10620	10631	10632	23634	23634					0.10931534064297921
KMFLKSYRRWR	11	Unmodified	_KMFLKSYRRWR_					0	0	0		ENST00000448507.5_1_4:7033984-7034191:+|nuORF	ENST00000448507.5_1_4:7033984-7034191:+|nuORF	ENST00000448507.5_1_4:7033984-7034191:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	524.297762	1569.87146	0.48843	0.00025608	0.56004	0.00029363	1.0485	0.00054971	524.2980401014969	56.894	0.63479	56.973	56.652	57.287	0.078674	-0.047566	-4.2323E-05	NaN	2.2527	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	561170			18749	10620	10631	10632							0.10931534064297921
KMFNVLTI	8	Unmodified	_KMFNVLTI_					0	0	0			REV__nc|ENSG00000165219|Q14C86-6|GAPVD1	REV__nc|ENSG00000165219|Q14C86-6|GAPVD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7791748046875	2	483.278063	964.541574	0.43609	0.00021075	0.62938	0.00030417	1.0655	0.00051492	483.27874672542566	84.92	0.75398	84.92	84.663	85.417	0					76	28	4	0	0	0	0.4397	2	22254	22254;22278		9.3474	0	1	787010	+		18750	23070	10632	10633	23635;23636	23635					0.05788490064878715
KMFNVLTI	8	Unmodified	_KMFNVLTI_					0	0	0			REV__nc|ENSG00000165219|Q14C86-6|GAPVD1	REV__nc|ENSG00000165219|Q14C86-6|GAPVD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.77935791015625	2	483.278063	964.541574	0.49345	0.00023847	0.68437	0.00033074	1.1778	0.00056922	483.27875259472586	84.963	0.82051	84.95	84.63	85.451	-0.012833					78	32	3	0	0	0	0.4397	1	22267	22267		9.3474	0	1	771840	+		18751	23070	10632	10633	23637	23637					0.05788490064878715
KMFNVLTI	8	Unmodified	_KMFNVLTI_					0	0	0			REV__nc|ENSG00000165219|Q14C86-6|GAPVD1	REV__nc|ENSG00000165219|Q14C86-6|GAPVD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	483.278063	964.541574	0.49345	0.00023847	0.68437	0.00033074	1.1778	0.00056922	483.27875259472586	84.963	0.82051	84.95	84.63	85.451	-0.012833	0.0152	2.3758E-05	NaN	9.3474	78	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	771840	+		18752	23070	10632	10633							0.05788490064878715
KMFVTTSYLI	10	Unmodified	_KMFVTTSYLI_					0	0	0		ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.82861328125	2	601.828117	1201.64168	0.61702	0.00037134	-0.28502	-0.00017153	0.332	0.0001998	601.8278438853304	20.66	0.49907	20.608	20.418	20.917	-0.05291					25	17	2	0	0	0	0.41085	1	2616	2616		1.4819	0	1	62798			18753	8252	10633	10634	23638	23638					0.04892682608010546
KMFVTTSYLI	10	Unmodified	_KMFVTTSYLI_					0	0	0		ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	601.828117	1201.64168	0.56016	0.00033712	-0.087014	-5.2368E-05	0.47314	0.00028475	601.8278289449964	20.608	0.45771	20.608	20.395	20.853	0	-0.021829	0.00021535	NaN	1.4819	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61999			18754	8252	10633	10634							0.04892682608010546
KMFVTTSYLI	10	Unmodified	_KMFVTTSYLI_					0	0	0		ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	601.828117	1201.64168	0.81056	0.00048782	-0.43074	-0.00025923	0.37982	0.00022859	601.8278234744952	20.783	0.45453	20.673	20.495	20.95	-0.11003	0.043661	-0.00019838	NaN	1.4819	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79102			18755	8252	10633	10634							0.04892682608010546
KMIKFALP	8	Unmodified	_KMIKFALP_					0	0	0			REV__ENST00000428931.5_1_1:154242855-154243155:+|nuORF	REV__ENST00000428931.5_1_1:154242855-154243155:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.29095458984375	2	474.290974	946.567395	0.19114	9.0657E-05	-0.16066	-7.6201E-05	0.03048	1.4457E-05	474.2907796338292	71.479	1.8231	71.479	70.873	72.696	0					207	65	4	0	0	0	0.45015	1	18217	18217		5.7604	5.7604	1	2291700	+		18756	20924	10634	10635	23639	23639					0.09197384307140055
KMITEFGHP	9	Unmodified	_KMITEFGHP_					0	0	0		ENSG00000116213|ENST00000270708|WRAP73;ENST00000469643.1_1_1:3549956-3551942:-|nuORF;ENST00000497940.5_1_1:3549956-3553597:-|nuORF	ENSG00000116213|ENST00000270708|WRAP73	ENSG00000116213|ENST00000270708|WRAP73	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.8217163085938	2	530.268227	1058.5219	0.35829	0.00018999	-0.99273	-0.00052641	-0.63444	-0.00033642	530.2695082045728	16.295	0.37029	16.295	16.035	16.405	0					17	12	3	0	0	0	0.25988	1	1207	1207		3.9444	0.068064	1	18908			18757	2714	10635	10636	23640	23640					-0.005018859458914449
KMKAKLHNLFK	11	Unmodified	_KMKAKLHNLFK_					0	0	0			REV__ENST00000409355.2_1_2:198400290-198404846:+|nuORF	REV__ENST00000409355.2_1_2:198400290-198404846:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.5986633300781	3	453.276075	1356.8064	-0.10783	-4.8877E-05	0.82721	0.00037495	0.71938	0.00032608	453.2764308066487	12.432	0.2569	12.336	12.206	12.463	-0.096607					20	8	3	0	0	0	0.33346	1	140	140		0.50596	0.34663	1	79203	+		18758	20759	10636	10637	23641	23641					0.14226539538458383
KMKEKAEKKL	10	Unmodified	_KMKEKAEKKL_					0	0	0		ENSG00000120262|ENST00000239374|CCDC170	ENSG00000120262|ENST00000239374|CCDC170	ENSG00000120262|ENST00000239374|CCDC170	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.5840759277344	3	411.584686	1231.73223	-0.013446	-5.5341E-06	-0.50528	-0.00020797	-0.51873	-0.0002135	411.5843773264737	17.454	0.84847	17.336	16.909	17.757	-0.11739					83	29	4	0	0	0	0.3994	1	1711	1711		3.5871	0	1	296390			18759	2934	10637	10638	23642	23642					0.12563151656308946
KMKMPKFSVS	10	Unmodified	_KMKMPKFSVS_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8228149414062	2	591.822312	1181.63007	0.52748	0.00031217	-1.0039	-0.00059412	-0.47641	-0.00028195	591.8215829514774	20.702	0.68197	20.702	20.456	21.138	0					42	23	3	0	0	0	0.32072	1	2620	2620		2.9952	2.033	1	141630			18760	3189	10638	10639	23643	23643					0.04652162313050212
KMKSQQFTPQ	10	Unmodified	_KMKSQQFTPQ_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.8287963867188	2	611.816073	1221.61759	0.49454	0.00030257	0.1575	9.6363E-05	0.65204	0.00039893	612.3176769747848	48.034	0.49609	48.077	47.987	48.483	0.04332					26	18	2	0	0	0	0.2811	1	11009	11009		22.736	0	1	597810	+		18761	13235	10639	10640	23644	23644					0.015648421743662766
KMLDNFYNF	9	Oxidation (M)	_KM(Oxidation (M))LDNFYNF_		KM(1)LDNFYNF		KM(56)LDNFYNF	0	0	1		ENST00000528004.5_1_11:86037714-86055806:+|nuORF;ENST00000531485.5_1_11:86013462-86056677:+|nuORF;ENST00000530208.1_1_11:86014499-86055761:+|nuORF;ENSG00000149196|ENST00000278483|HIKESHI	ENST00000528004.5_1_11:86037714-86055806:+|nuORF	ENST00000528004.5_1_11:86037714-86055806:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.8115844726562	2	604.276249	1206.53795	0.91639	0.00055375	-0.57768	-0.00034908	0.33871	0.00020467	604.2757983115572	56.219	0.46386	56.2	55.915	56.379	-0.019081					36	16	3	0	0	0	0.04299	1	13516	13516		55.503	22.717	1	1598700			18762	4850	10640	10641	23645	23645		603			-0.05706224499658674
KMLFVKII	8	Unmodified	_KMLFVKII_					0	0	0			REV__ENSG00000175718|ENST00000424776|RBMXL3	REV__ENSG00000175718|ENST00000424776|RBMXL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.9588623046875	2	496.322274	990.629995	0.50545	0.00025087	-0.96464	-0.00047877	-0.45919	-0.00022791	496.3215025465386	92.729	0.68856	92.729	92.451	93.14	0.00047302					100	53	2	0	0	0	0.34434	1	24611	24611		0	0	1	397700	+		18763	17905	10641	10642	23646	23646					0.13430530375342187
KMLFVKII	8	Unmodified	_KMLFVKII_					0	0	0			REV__ENSG00000175718|ENST00000424776|RBMXL3	REV__ENSG00000175718|ENST00000424776|RBMXL3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	496.322274	990.629995	0.37405	0.00018565	-0.93723	-0.00046517	-0.56318	-0.00027952	496.32155436318357	92.705	0.67218	92.795	92.494	93.166	0.089195	0.033359	5.6746E-05	NaN	0	100	54	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	474700	+		18764	17905	10641	10642							0.13430530375342187
KMLKSGLNIAH	11	Unmodified	_KMLKSGLNIAH_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.370849609375	2	606.350083	1210.68561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.76	1	114.76	114.26	115.26	0								0	0	0	0.38126	1	29761	29761		1.1933	0	1				18765	290	10642	10643	23647	23647					0.08869711825013837
KMLKSGLNIAH	11	Unmodified	_KMLKSGLNIAH_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3692626953125	2	606.350083	1210.68561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.92	1	113.9	113.4	114.4	-0.019096								0	0	0	0.38126	1	29597	29597		1.1933	0	1				18766	290	10642	10643	23648	23648					0.08869711825013837
KMMADYGIRK	10	2 Oxidation (M)	_KM(Oxidation (M))M(Oxidation (M))ADYGIRK_		KM(1)M(1)ADYGIRK		KM(56)M(56)ADYGIRK	0	0	2		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.5422668457031	3	415.542381	1243.60531	-0.32049	-0.00013318	-0.22941	-9.533E-05	-0.54991	-0.00022851	415.54258308644023	15.078	1.2194	15.078	14.789	16.008	0					140	42	7	0	0	0	0.0645	1	907	907		55.839	47.087	1	1894400			18767	8366	10643	10644	23649	23649		901;902			-0.0067451756035552535
KMMADYGIRK	10	2 Oxidation (M)	_KM(Oxidation (M))M(Oxidation (M))ADYGIRK_		KM(1)M(1)ADYGIRK		KM(51)M(51)ADYGIRK	0	0	2		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5423889160156	3	415.542381	1243.60531	0.042983	1.7861E-05	-0.38659	-0.00016064	-0.34361	-0.00014278	415.5424304822906	15.222	1.2668	15.112	14.847	16.114	-0.10981					119	43	5	0	0	0	0.088207	1	948	948		50.648	39.848	1	1673100			18768	8366	10643	10644	23650	23650		901;902			-0.0067451756035552535
KMMADYGIRK	10	2 Oxidation (M)	_KM(Oxidation (M))M(Oxidation (M))ADYGIRK_		KM(1)M(1)ADYGIRK		KM(67)M(67)ADYGIRK	0	0	2		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.5423583984375	3	415.542381	1243.60531	-0.075404	-3.1334E-05	-0.52109	-0.00021653	-0.59649	-0.00024787	415.5424782678743	15.249	1.0755	15.185	14.898	15.973	-0.064414					112	36	6	0	0	0	0.024688	2	960	960;1005		66.617	51.368	1	2051300			18769	8366	10643	10644	23651;23652	23651		901;902			-0.0067451756035552535
KMMDVTVTI	9	2 Oxidation (M)	_KM(Oxidation (M))M(Oxidation (M))DVTVTI_		KM(1)M(1)DVTVTI		KM(80)M(80)DVTVTI	0	0	2		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.2672119140625	2	535.267035	1068.51952	0.15122	8.0945E-05	-0.24222	-0.00012965	-0.091	-4.8709E-05	535.2670432876287	38.699	0.75636	38.699	38.347	39.104	0					84	26	4	0	0	0	0.0098873	3	8095	8042;8095;8144		79.596	41.622	1	2503300			18770	1820	10644	10645	23653;23654;23655	23654		221;222			-0.012001024658275128
KMMDVTVTI	9	2 Oxidation (M)	_KM(Oxidation (M))M(Oxidation (M))DVTVTI_		KM(1)M(1)DVTVTI		KM(80)M(80)DVTVTI	0	0	2		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.2671508789062	2	535.267035	1068.51952	0.34544	0.0001849	-0.64279	-0.00034406	-0.29735	-0.00015916	535.2669604544728	38.595	0.70348	38.685	38.347	39.05	0.090881					90	25	5	0	0	0	0.0098873	3	8080	8034;8080;8130		79.596	41.622	1	2782600			18771	1820	10644	10645	23656;23657;23658	23657		221;222			-0.012001024658275128
KMMDVTVTI	9	2 Oxidation (M)	_KM(Oxidation (M))M(Oxidation (M))DVTVTI_		KM(1)M(1)DVTVTI		KM(83)M(83)DVTVTI	0	0	2		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.2671508789062	2	535.267035	1068.51952	0.58208	0.00031157	-0.64322	-0.0003443	-0.061143	-3.2728E-05	535.2668072949382	38.559	0.80399	38.656	38.294	39.098	0.097527					86	28	4	0	0	0	0.0079761	3	8049	8003;8049;8095		82.529	44.555	1	2833600			18772	1820	10644	10645	23659;23660;23661	23660		221;222			-0.012001024658275128
KMMDVTVTIK	10	2 Oxidation (M)	_KM(Oxidation (M))M(Oxidation (M))DVTVTIK_		KM(1)M(1)DVTVTIK		KM(47)M(47)DVTVTIK	0	0	2		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.3148193359375	2	599.314517	1196.61448	0.31199	0.00018698	-0.24383	-0.00014613	0.068157	4.0847E-05	599.3145293980936	25.759	0.93432	25.759	25.445	26.379	0					90	32	4	0	0	0	0.10463	1	4149	4149		47.053	31.804	1	683180			18773	1820	10645	10646	23662	23662		221;222			0.0240383100535837
KMMDVTVTIK	10	2 Oxidation (M)	_KM(Oxidation (M))M(Oxidation (M))DVTVTIK_		KM(1)M(1)DVTVTIK		KM(56)M(56)DVTVTIK	0	0	2		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.3146362304688	2	599.314517	1196.61448	0.23997	0.00014381	-0.31626	-0.00018954	-0.076297	-4.5726E-05	599.3145517994487	25.756	0.8227	25.718	25.412	26.235	-0.03867					80	28	4	0	0	0	0.0645	1	4158	4158		55.839	36.477	1	726220			18774	1820	10645	10646	23663	23663		221;222			0.0240383100535837
KMMDVTVTIK	10	2 Oxidation (M)	_KM(Oxidation (M))M(Oxidation (M))DVTVTIK_		KM(1)M(1)DVTVTIK		KM(41)M(41)DVTVTIK	0	0	2		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.3145751953125	2	599.314517	1196.61448	0.1921	0.00011513	-0.24493	-0.00014679	-0.052823	-3.1658E-05	599.3145772621034	25.796	0.93743	25.774	25.444	26.381	-0.022236					88	33	4	0	0	0	0.13395	1	4151	4151		40.714	29.915	1	719260			18775	1820	10645	10646	23664	23664		221;222			0.0240383100535837
KMNEPKRL	8	Unmodified	_KMNEPKRL_					0	0	0		ENSG00000132321|ENST00000409907|IQCA1;nc|ENSG00000132321|Q86XH1-5|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2896728515625	2	508.289494	1014.56443	0.23025	0.00011703	0.52375	0.00026622	0.754	0.00038325	508.2896388672197	22.178	1.0882	22.078	21.584	22.672	-0.10034					61	39	3	0	0	0	0.44734	1	3132	3132		6.7232	0.51738	1	370850			18776	3620	10646	10647	23665	23665					0.05773509182336056
KMPKFKMPSF	10	2 Oxidation (M)	_KM(Oxidation (M))PKFKM(Oxidation (M))PSF_		KM(1)PKFKM(1)PSF		KM(82)PKFKM(82)PSF	0	0	2		AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant;AHNAK2|p.A5000Pfs*32|1|0.13|ENSG00000185567|chr14:104940454-104940454|A/-|frameshift_variant;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant	AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8873291015625	3	424.887489	1271.64064	-0.094673	-4.0225E-05	-0.38445	-0.00016335	-0.47912	-0.00020357	424.8873794207161	30.668	1.2498	30.668	30.333	31.583	0					150	44	4	0	0	0	0.010169	5	5733	5585;5633;5682;5733;5784		82.445	54.264	1	1188200			18777	23	10647	10648	23666;23667;23668;23669;23670	23669		2;3			0.015681449674730175
KMPKFKMPSF	10	2 Oxidation (M)	_KM(Oxidation (M))PKFKM(Oxidation (M))PSF_		KM(1)PKFKM(1)PSF		KM(100)PKFKM(100)PSF	0	0	2		AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant;AHNAK2|p.A5000Pfs*32|1|0.13|ENSG00000185567|chr14:104940454-104940454|A/-|frameshift_variant;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant	AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.8873596191406	3	424.887489	1271.64064	-0.19847	-8.4329E-05	-0.21579	-9.1687E-05	-0.41426	-0.00017602	424.88740522273673	30.846	1.2319	30.874	30.354	31.586	0.027948					132	43	4	0	0	0	0.0029358	5	5744	5595;5647;5693;5744;5790		103.69	53.56	1	1130700			18778	23	10647	10648	23671;23672;23673;23674;23675	23674		2;3			0.015681449674730175
KMPKFKMPSF	10	2 Oxidation (M)	_KM(Oxidation (M))PKFKM(Oxidation (M))PSF_		KM(1)PKFKM(1)PSF		KM(82)PKFKM(82)PSF	0	0	2		AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant;AHNAK2|p.A5000Pfs*32|1|0.13|ENSG00000185567|chr14:104940454-104940454|A/-|frameshift_variant;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant	AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.88739013671875	3	424.887489	1271.64064	-0.29168	-0.00012393	-0.4675	-0.00019864	-0.75918	-0.00032257	424.88748380728117	29.98	1.6226	29.995	28.76	30.382	0.015396					211	56	6	0	0	0	0.010169	4	5399	5351;5399;5478;5523		82.445	53.653	1	1454500			18779	23	10647	10648	23676;23677;23678;23679	23677		2;3			0.015681449674730175
KMPKFKMPSF	10	2 Oxidation (M)	_KM(Oxidation (M))PKFKM(Oxidation (M))PSF_		KM(1)PKFKM(1)PSF		KM(79)PKFKM(79)PSF	0	0	2		AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant;AHNAK2|p.A5000Pfs*32|1|0.13|ENSG00000185567|chr14:104940454-104940454|A/-|frameshift_variant;nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2	AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant	AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.88720703125	3	424.887489	1271.64064	-0.20117	-8.5474E-05	-0.30036	-0.00012762	-0.50153	-0.00021309	424.88740473490896	30.67	1.1585	30.697	30.335	31.493	0.027159					142	41	4	0	0	0	0.013686	4	5660	5615;5660;5709;5755		78.61	54.809	1	1560000			18780	23	10647	10648	23680;23681;23682;23683	23681		2;3			0.015681449674730175
KMPKMKMPKF	10	3 Oxidation (M)	_KM(Oxidation (M))PKM(Oxidation (M))KM(Oxidation (M))PKF_		KM(1)PKM(1)KM(1)PKF		KM(59)PKM(59)KM(59)PKF	0	0	3		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.56402587890625	3	438.564128	1312.67056	-0.26533	-0.00011637	-0.60225	-0.00026413	-0.86759	-0.00038049	438.5641144872573	14.043	1.109	14.043	13.396	14.505	0					136	38	5	0	0	0	0.049822	2	587	587;633		59.052	48.737	1	1061800			18781	3189	10648	10649	23684;23685	23684		399;400;401			0.02672760641144123
KMPKMKMPKF	10	3 Oxidation (M)	_KM(Oxidation (M))PKM(Oxidation (M))KM(Oxidation (M))PKF_		KM(1)PKM(1)KM(1)PKF		KM(65)PKM(65)KM(65)PKF	0	0	3		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.5639953613281	3	438.564128	1312.67056	-0.28647	-0.00012564	-0.52738	-0.00023129	-0.81385	-0.00035693	438.56412044381767	14.181	1.1302	14.076	13.41	14.54	-0.10466					129	39	5	0	0	0	0.026238	2	621	621;664		64.927	54.612	1	1037800			18782	3189	10648	10649	23686;23687	23686		399;400;401			0.02672760641144123
KMPKMKMPKF	10	3 Oxidation (M)	_KM(Oxidation (M))PKM(Oxidation (M))KM(Oxidation (M))PKF_		KM(1)PKM(1)KM(1)PKF		KM(65)PKM(65)KM(65)PKF	0	0	3		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.5640563964844	3	438.564128	1312.67056	-0.27584	-0.00012097	-0.41344	-0.00018132	-0.68928	-0.00030229	438.5641306381587	14.11	1.539	14.044	13.33	14.869	-0.066068					157	54	4	0	0	0	0.026238	2	619	619;666		64.927	54.612	1	1089500			18783	3189	10648	10649	23688;23689	23688		399;400;401			0.02672760641144123
KMPKMKMPTF	10	3 Oxidation (M)	_KM(Oxidation (M))PKM(Oxidation (M))KM(Oxidation (M))PTF_		KM(1)PKM(1)KM(1)PTF		KM(89)PKM(89)KM(89)PTF	0	0	3		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.5487365722656	3	429.548367	1285.62327	-0.24203	-0.00010396	-1.0546	-0.00045298	-1.2966	-0.00055695	429.5486101331685	16.149	1.3933	16.149	15.012	16.405	0					148	48	4	0	0	0	0.0055285	4	1203	1161;1203;1247;1290		88.576	66.776	1	3953600			18784	3189	10649	10650	23690;23691;23692;23693	23691		402;403;404			-0.00811518629825514
KMPKMKMPTF	10	3 Oxidation (M)	_KM(Oxidation (M))PKM(Oxidation (M))KM(Oxidation (M))PTF_		KM(1)PKM(1)KM(1)PTF		KM(80)PKM(80)KM(80)PTF	0	0	3		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.5488586425781	3	429.548367	1285.62327	-0.15785	-6.7803E-05	-0.69243	-0.00029743	-0.85028	-0.00036524	429.54867783964767	16.699	2.158	16.699	16.377	18.535	0					195	74	4	0	0	0	0.012192	4	1374	1330;1374;1418;1462		80.24	63.191	1	6010100			18785	3189	10649	10650	23694;23695;23696;23697	23695		402;403;404			-0.00811518629825514
KMPKMKMPTF	10	3 Oxidation (M)	_KM(Oxidation (M))PKM(Oxidation (M))KM(Oxidation (M))PTF_		KM(1)PKM(1)KM(1)PTF		KM(93)PKM(93)KM(93)PTF	0	0	3		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.5488586425781	3	429.548367	1285.62327	-0.26242	-0.00011272	-1.011	-0.00043429	-1.2734	-0.00054701	429.54861460340624	16.298	1.1953	16.184	15.226	16.421	-0.11434					144	40	4	0	0	0	0.0046927	4	1279	1190;1235;1279;1328		93.448	76.4	1	4049000			18786	3189	10649	10650	23698;23699;23700;23701	23700		402;403;404			-0.00811518629825514
KMPKMKMPTF	10	3 Oxidation (M)	_KM(Oxidation (M))PKM(Oxidation (M))KM(Oxidation (M))PTF_		KM(1)PKM(1)KM(1)PTF		KM(86)PKM(86)KM(86)PTF	0	0	3		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.5486145019531	3	429.548367	1285.62327	-0.25747	-0.0001106	-0.65237	-0.00028022	-0.90984	-0.00039082	429.54875710599543	16.809	2.0485	16.694	16.395	18.443	-0.11434					199	72	4	0	0	0	0.0066549	4	1457	1373;1413;1457;1505		86.276	67.936	1	6373200			18787	3189	10649	10650	23702;23703;23704;23705	23704		402;403;404			-0.00811518629825514
KMPKMKMPTF	10	3 Oxidation (M)	_KM(Oxidation (M))PKM(Oxidation (M))KM(Oxidation (M))PTF_		KM(1)PKM(1)KM(1)PTF		KM(85)PKM(85)KM(85)PTF	0	0	3		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.5487365722656	3	429.548367	1285.62327	-0.17683	-7.5957E-05	-1.3399	-0.00057555	-1.5167	-0.00065151	429.548549384505	16.166	1.1018	16.104	15.249	16.351	-0.062534					131	37	4	0	0	0	0.0080659	3	1221	1179;1221;1264		84.738	69.199	1	4478300			18788	3189	10649	10650	23706;23707;23708	23707		402;403;404			-0.00811518629825514
KMPKMKMPTF	10	3 Oxidation (M)	_KM(Oxidation (M))PKM(Oxidation (M))KM(Oxidation (M))PTF_		KM(1)PKM(1)KM(1)PTF		KM(80)PKM(80)KM(80)PTF	0	0	3		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.54888916015625	3	429.548367	1285.62327	-0.053526	-2.2992E-05	-0.77224	-0.00033171	-0.82576	-0.00035471	429.5487413621035	16.729	2.1278	16.666	16.351	18.478	-0.062534					221	75	4	0	0	0	0.012192	4	1367	1325;1367;1413;1455		80.24	61.9	1	6165600			18789	3189	10649	10650	23709;23710;23711;23712	23710		402;403;404			-0.00811518629825514
KMPKVKMPKF	10	2 Oxidation (M)	_KM(Oxidation (M))PKVKM(Oxidation (M))PKF_		KM(1)PKVKM(1)PKF		KM(86)PKVKM(86)PKF	0	0	2		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.57513427734375	3	422.575133	1264.70357	-0.22734	-9.6068E-05	-0.25673	-0.00010849	-0.48407	-0.00020456	422.5751042026236	18.794	1.9986	18.794	17.628	19.627	0					224	69	4	0	0	0	0.0071242	3	2041	2041;2084;2128		85.764	68.193	1	836630			18790	3189	10650	10651	23713;23714;23715	23713		405;406			0.08180710755527798
KMPKVKMPKF	10	2 Oxidation (M)	_KM(Oxidation (M))PKVKM(Oxidation (M))PKF_		KM(1)PKVKM(1)PKF		KM(63)PKVKM(63)PKF	0	0	2		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.574951171875	3	422.575133	1264.70357	-0.20036	-8.4669E-05	-0.16864	-7.1261E-05	-0.369	-0.00015593	422.5751002050072	18.953	2.3753	18.836	17.323	19.698	-0.11739					229	82	4	0	0	0	0.032393	4	2162	1987;2121;2162;2208		62.869	53.892	1	855720			18791	3189	10650	10651	23716;23717;23718;23719	23718		405;406			0.08180710755527798
KMPKVKMPKF	10	2 Oxidation (M)	_KM(Oxidation (M))PKVKM(Oxidation (M))PKF_		KM(1)PKVKM(1)PKF		KM(75)PKVKM(75)PKF	0	0	2		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.57513427734375	3	422.575133	1264.70357	-0.23835	-0.00010072	-0.14264	-6.0275E-05	-0.38099	-0.000161	422.5751216892471	18.906	1.9427	18.848	17.678	19.621	-0.058174					208	68	4	0	0	0	0.017207	4	2094	1997;2094;2138;2184		74.772	59.815	1	904960			18792	3189	10650	10651	23720;23721;23722;23723	23721		405;406			0.08180710755527798
KMRANNQK	8	Unmodified	_KMRANNQK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.E1055Gfs*20|1|0.19|ENSG00000115306|chr2:54631208-54631224|GAGAGGCCTCCCTGGGA/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2690124511719	2	495.269093	988.523633	0.20468	0.00010137	-0.35364	-0.00017515	-0.14896	-7.3777E-05	495.26867635453186	16.043	0.44271	15.928	15.748	16.191	-0.11434					31	14	3	0	0	0	0.4419	1	1229	1229		8.5933	1.8701	1	84498			18793	2631	10651	10652	23724	23724					0.02891167862730981
KMRANNQK	8	Unmodified	_KMRANNQK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.E1055Gfs*20|1|0.19|ENSG00000115306|chr2:54631208-54631224|GAGAGGCCTCCCTGGGA/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	495.269093	988.523633	0.20489	0.00010148	-0.2767	-0.00013704	-0.071812	-3.5566E-05	495.26882225896804	15.985	0.39107	15.923	15.73	16.121	-0.062534	-0.0056759	2.9764E-05	NaN	8.5933	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75254			18794	2631	10651	10652							0.02891167862730981
KMRGASQNRIL	11	Unmodified	_KMRGASQNRIL_					0	0	0			REV__ENST00000377710.9_1_20:17949663-17949759:+|nuORF	REV__ENST00000377710.9_1_20:17949663-17949759:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.3611450195312	2	637.361513	1272.70847	0.31375	0.00019997	0.20746	0.00013223	0.52121	0.0003322	637.3616551941907	81.006	0.51129	81.006	80.809	81.32	0					47	24	3	0	0	0	0.30708	1	21086	21086		21.59	7.1848	1	216930	+		18795	20508	10652	10653	23725	23725					0.08302730942500602
KMRGASQNRIL	11	Unmodified	_KMRGASQNRIL_					0	0	0			REV__ENST00000377710.9_1_20:17949663-17949759:+|nuORF	REV__ENST00000377710.9_1_20:17949663-17949759:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.3616333007812	2	637.361513	1272.70847	0.59222	0.00037746	0.097312	6.2023E-05	0.68953	0.00043948	637.3614095331549	81.096	0.48376	81.07	80.84	81.324	-0.026825					40	20	3	0	0	0	0.35939	1	21092	21092		16.566	5.7664	1	170100	+		18796	20508	10652	10653	23726	23726					0.08302730942500602
KMRGASQNRIL	11	Unmodified	_KMRGASQNRIL_					0	0	0			REV__ENST00000377710.9_1_20:17949663-17949759:+|nuORF	REV__ENST00000377710.9_1_20:17949663-17949759:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	637.361513	1272.70847	0.31375	0.00019997	0.20746	0.00013223	0.52121	0.0003322	637.3616551941907	81.006	0.51129	81.006	80.809	81.32	0	-0.014844	6.3085E-05	NaN	21.59	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216930	+		18797	20508	10652	10653							0.08302730942500602
KMRGASQNRIL	11	Unmodified	_KMRGASQNRIL_					0	0	0			REV__ENST00000377710.9_1_20:17949663-17949759:+|nuORF	REV__ENST00000377710.9_1_20:17949663-17949759:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	637.361513	1272.70847	0.32055	0.00020431	0.15656	9.9788E-05	0.47712	0.0003041	637.3616579504774	80.923	0.52973	80.988	80.776	81.305	0.065102	-0.033462	-1.7933E-06	NaN	21.59	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250390	+		18798	20508	10652	10653							0.08302730942500602
KMRGASQNRIL	11	Unmodified	_KMRGASQNRIL_					0	0	0			REV__ENST00000377710.9_1_20:17949663-17949759:+|nuORF	REV__ENST00000377710.9_1_20:17949663-17949759:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	637.361513	1272.70847	0.59222	0.00037746	0.097312	6.2023E-05	0.68953	0.00043948	637.3614095331549	81.096	0.48376	81.07	80.84	81.324	-0.026825	0.048306	-7.7323E-05	NaN	21.59	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170100	+		18799	20508	10652	10653							0.08302730942500602
KMRIGHTV	8	Unmodified	_KMRIGHTV_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2473449707031	2	471.271104	940.527655	-0.32036	-0.00015097	2.4065	0.0011341	2.0861	0.00098314	471.2724993813478	34.329	0.86462	34.329	33.808	34.672	0					46	30	2	0	0	0	0.34131	1	6857	6857		12.532	3.1841	1	152570			18800	7759	10653	10654	23727	23727					0.0550125735645679
KMRRKKRF	8	Unmodified	_KMRRKKRF_					0	0	0		nc|ENSG00000271447|Q9H239-2|MMP28;ENSG00000271447|ENST00000605424|MMP28	nc|ENSG00000271447|Q9H239-2|MMP28	nc|ENSG00000271447|Q9H239-2|MMP28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.6896362304688	2	575.361119	1148.70769	-0.067281	-3.8711E-05	0.61066	0.00035135	0.54338	0.00031264	575.3613027015118	61.914	0.5598	61.905	61.582	62.142	-0.0085526					31	19	2	0	0	0	0.34337	1	15150	15150		5.2307	0.47466	1	161320			18801	8696	10654	10655	23728	23728					0.1392798108408897
KMRSVSGRRKA	11	Unmodified	_KMRSVSGRRKA_					0	0	0		ENSG00000186119|ENST00000333976|OR5D18	ENSG00000186119|ENST00000333976|OR5D18	ENSG00000186119|ENST00000333976|OR5D18	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.3699340820312	2	638.374955	1274.73536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.4	1	96.4	95.9	96.9	0								0	0	0	0.37609	1	25756	25756		2.4985	0.84587	1				18802	7592	10655	10656	23729	23729					0.10897839553695121
KMRTLRHGILV	11	Unmodified	_KMRTLRHGILV_					0	0	0		ENST00000554116.5_1_16:89989809-89998148:+|nuORF	ENST00000554116.5_1_16:89989809-89998148:+|nuORF	ENST00000554116.5_1_16:89989809-89998148:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.93975830078125	3	441.939575	1322.79689	0.092096	4.0701E-05	0.12398	5.479E-05	0.21607	9.549E-05	441.9397146623042	49.469	1.1725	49.501	48.852	50.025	0.032043					137	42	4	0	0	0	0.46842	1	11406	11406		2.2527	0.66045	1	865110			18803	11830	10656	10657	23730	23730					0.14840771252966078
KMSEKILLL	9	Oxidation (M)	_KM(Oxidation (M))SEKILLL_		KM(1)SEKILLL		KM(68)SEKILLL	0	0	1		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.83056640625	2	545.83066	1089.64677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.199	1	42.29	41.79	42.79	0.091362								0	0	0	0.026891	1	9157	9157		67.838	22.139	1				18804	3255	10657	10658	23731	23731		417			0.10552986470634096
KMSEKILLL	9	Oxidation (M)	_KM(Oxidation (M))SEKILLL_		KM(1)SEKILLL		KM(59)SEKILLL	0	0	1		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8307495117188	2	545.83066	1089.64677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.347	1	42.438	41.938	42.938	0.091362								0	0	0	0.055092	1	9199	9199		59.368	22.862	1				18805	3255	10657	10658	23732	23732		417			0.10552986470634096
KMTINQPYY	9	Unmodified	_KMTINQPYY_					0	0	0			REV__ENST00000486147.1_1_6:26091287-26093193:+|nuORF	REV__ENST00000486147.1_1_6:26091287-26093193:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.8065185546875	2	579.286617	1156.55868	0.32748	0.0001897	-2.1135	-0.0012243	-1.786	-0.0010346	579.786855485725	38.028	1.1252	38.028	37.616	38.741	0					82	39	4	0	0	0	0.16284	1	7808	7808		24.021	0	1	334340	+		18806	13419	10658	10659	23733	23733					-0.013336341199874369
KMVDYMQP	8	2 Oxidation (M)	_KM(Oxidation (M))VDYM(Oxidation (M))QP_		KM(1)VDYM(1)QP		KM(54)VDYM(54)QP	0	0	2		nc|ENSG00000166557|Q9Y3Q3-2|TMED3	nc|ENSG00000166557|Q9Y3Q3-2|TMED3	nc|ENSG00000166557|Q9Y3Q3-2|TMED3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.247314453125	2	522.230453	1042.44635	0.97211	0.00050766	-3.1093	-0.0016237	-2.1372	-0.0011161	522.2289475219433	56.732	0.40522	56.713	56.568	56.973	-0.019081					19	14	2	0	0	0	0.13814	1	13643	13643		53.833	7.8118	1	276760			18807	12819	10659	10660	23734	23734		980;981			-0.07317231188471851
KMWFSPRSKK	10	Unmodified	_KMWFSPRSKK_					0	0	0		nc|ENSG00000138376|Q99728-3|BARD1;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.8615112304688	2	647.858075	1293.7016	0.2808	0.00018192	2.9928	0.0019389	3.2736	0.0021208	647.8616339481116	102.98	0.038986	102.97	102.94	102.98	-0.0011063					5	3	2	0	0	0	0.38773	1	27404	27404		5.7319	0.43497	1	274500			18808	4142	10660	10661	23735	23735					0.0664941806189745
KMWVVFML	8	Unmodified	_KMWVVFML_					0	0	0			REV__ENSG00000170558|ENST00000269141|CDH2	REV__ENSG00000170558|ENST00000269141|CDH2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2852172851562	2	527.284834	1052.55512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.59	1	116.57	116.07	117.07	-0.022781								0	0	0	0.37992	1	30200	30200		0.79363	0	1		+		18809	17585	10661	10662	23736	23736					0.030940245724650595
KMWVVFML	8	Unmodified	_KMWVVFML_					0	0	0			REV__ENSG00000170558|ENST00000269141|CDH2	REV__ENSG00000170558|ENST00000269141|CDH2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2847290039062	2	527.284834	1052.55512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.82	1	118.84	118.34	119.34	0.026253								0	0	0	0.37992	1	30755	30755		0.79363	0	1		+		18810	17585	10661	10662	23737	23737					0.030940245724650595
KMWVVFML	8	Unmodified	_KMWVVFML_					0	0	0			REV__ENSG00000170558|ENST00000269141|CDH2	REV__ENSG00000170558|ENST00000269141|CDH2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.284912109375	2	527.284834	1052.55512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.12	1	119.15	118.65	119.65	0.026253								0	0	0	0.37992	1	30824	30824		0.79363	0	1		+		18811	17585	10661	10662	23738	23738					0.030940245724650595
KMWYVNTF	8	Unmodified	_KMWYVNTF_					0	0	0			REV__ENST00000562949.1_2_16:69362927-69368484:-|nuORF	REV__ENST00000562949.1_2_16:69362927-69368484:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2936401367188	2	544.76532	1087.51609	0.28887	0.00015737	-2.001	-0.0010901	-1.7122	-0.00093274	544.764565331336	23.526	0.17824	23.526	23.39	23.569	0					10	5	2	0	0	0	0.34378	1	3444	3444		3.9444	0	1	30865	+		18812	19269	10662	10663	23739	23739					-0.024169844575681054
KMWYVNTF	8	Unmodified	_KMWYVNTF_					0	0	0			REV__ENST00000562949.1_2_16:69362927-69368484:-|nuORF	REV__ENST00000562949.1_2_16:69362927-69368484:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.76532	1087.51609	0.48696	0.00026528	-0.10935	-5.9569E-05	0.37761	0.00020571	544.7653976840005	23.62	0.27807	23.548	23.422	23.7	-0.072559	0.010824	0.00062486	NaN	3.9444	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32346	+		18813	19269	10662	10663							-0.024169844575681054
KNAIKPVLI	9	Unmodified	_KNAIKPVLI_					0	0	0		nc|ENSG00000084710|Q9Y2G0-2|EFR3B;nc|ENSG00000084710|Q9Y2G0-3|EFR3B;ENSG00000084710|ENST00000403714|EFR3B	nc|ENSG00000084710|Q9Y2G0-2|EFR3B	nc|ENSG00000084710|Q9Y2G0-2|EFR3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.30975341796875	2	498.334227	994.653902	0.28531	0.00014218	-0.40498	-0.00020182	-0.11967	-5.9636E-05	498.33384060408133	93.2	0.12421	93.2	93.12	93.245	0					12	10	2	0	0	0	0.26145	1	24810	24810		2.0598	0.21551	1	40219			18814	1247	10663	10664	23740	23740					0.15636087133361798
KNAIKPVLI	9	Unmodified	_KNAIKPVLI_					0	0	0		nc|ENSG00000084710|Q9Y2G0-2|EFR3B;nc|ENSG00000084710|Q9Y2G0-3|EFR3B;ENSG00000084710|ENST00000403714|EFR3B	nc|ENSG00000084710|Q9Y2G0-2|EFR3B	nc|ENSG00000084710|Q9Y2G0-2|EFR3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3100280761719	2	498.334227	994.653902	0.3619	0.00018035	0.27103	0.00013506	0.63294	0.00031541	498.33433908498546	92.385	0.086517	92.474	92.438	92.524	0.089203					8	5	2	0	0	0	0.25938	1	24553	24553		4.3292	0	1	28712			18815	1247	10663	10664	23741	23741					0.15636087133361798
KNAQLEKR	8	Unmodified	_KNAQLEKR_					0	0	0		nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;nc|ENSG00000164418|Q13002-7|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7906494140625	2	493.790715	985.566878	0.10095	4.9847E-05	0.027932	1.3793E-05	0.12888	6.364E-05	493.79051127702905	12.538	0.37748	12.441	12.236	12.614	-0.096607					23	12	3	0	0	0	0.34353	1	157	157		4.756	4.756	1	109280			18816	5843	10664	10665	23742	23742					0.07351680911665426
KNAQLEKR	8	Unmodified	_KNAQLEKR_					0	0	0		nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;nc|ENSG00000164418|Q13002-7|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.790715	985.566878	0.039274	1.9393E-05	-0.36567	-0.00018056	-0.32639	-0.00016117	493.7903700548443	12.545	0.33708	12.545	12.332	12.669	0	0.051522	-0.00014636	NaN	4.756	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87968			18817	5843	10664	10665							0.07351680911665426
KNCFHRYGLI	10	Unmodified	_KNCFHRYGLI_					0	0	0			REV__ENSG00000204394|ENST00000375663|VARS1	REV__ENSG00000204394|ENST00000375663|VARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.2821960449219	3	417.553609	1249.639	0.17962	7.5001E-05	1.1025	0.00046037	1.2822	0.00053537	417.55409601657243	24.311	0.85473	24.238	23.966	24.821	-0.072559					50	28	2	0	0	0	0.32123	1	3648	3648		0.69767	0	1	133930	+		18818	18939	10665	10666	23743	23743					0.02416271993729424
KNELRNEIV	9	Unmodified	_KNELRNEIV_					0	0	0			REV__nc|ENSG00000185739|Q86TD4-3|SRL	REV__nc|ENSG00000185739|Q86TD4-3|SRL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2890014648438	2	557.814387	1113.61422	0.18238	0.00010173	0.88697	0.00049477	1.0693	0.0005965	557.8152560619708	16.357	0.31771	16.294	16.177	16.495	-0.062534					14	10	2	0	0	0	0.26099	1	1304	1304		2.9952	0.93549	1	37319	+		18819	18405	10666	10667	23744	23744					0.061959153919815435
KNFILKRLFWK	11	Unmodified	_KNFILKRLFWK_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.64447021484375	3	498.309885	1491.90782	0.40189	0.00020027	-0.062082	-3.0936E-05	0.33981	0.00016933	498.3097121532675	91.062	0.81814	91.062	90.369	91.188	0					127	61	3	0	0	0	0.48212	2	24102	24102;24143		0.45452	0.35968	1	897570			18820	7524	10667	10668	23745;23746	23745					0.18154734232689407
KNFILKRLFWK	11	Unmodified	_KNFILKRLFWK_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3101501464844	3	498.309885	1491.90782	0.36462	0.00018169	-0.069674	-3.4719E-05	0.29495	0.00014697	498.3097813747597	91.782	0.60625	91.782	91.292	91.898	0					105	44	4	0	0	0	0.48212	4	24283	24283;24322;24367;24409		0.45452	0.38125	1	933100			18821	7524	10667	10668	23747;23748;23749;23750	23747					0.18154734232689407
KNFILKRLFWK	11	Unmodified	_KNFILKRLFWK_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.6444091796875	3	498.309885	1491.90782	0.27655	0.00013781	0.016032	7.989E-06	0.29258	0.00014579	498.30975734808266	93.412	1.1014	93.412	92.654	93.755	0					268	95	4	0	0	0	0.48212	1	24849	24849		0.45452	0.45452	1	1266800			18822	7524	10667	10668	23751	23751					0.18154734232689407
KNFILKRLFWK	11	Unmodified	_KNFILKRLFWK_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3095397949219	3	498.309885	1491.90782	0.40642	0.00020252	-0.078725	-3.9229E-05	0.32769	0.00016329	498.30974714759776	90.871	0.82294	90.962	90.503	91.326	0.090675					139	61	3	0	0	0	0.48212	3	24030	24030;24074;24128		0.45452	0.35968	1	1200300			18823	7524	10667	10668	23752;23753;23754	23752					0.18154734232689407
KNFILKRLFWK	11	Unmodified	_KNFILKRLFWK_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3099365234375	3	498.309885	1491.90782	0.37882	0.00018877	-0.062916	-3.1352E-05	0.31591	0.00015742	498.3097733753652	91.836	1.3092	91.927	91.318	92.627	0.090675					269	92	4	0	0	0	0.47633	5	24303	24263;24303;24383;24426;24509		1.2148	1.1315	1	1500100			18824	7524	10667	10668	23755;23756;23757;23758;23759	23756					0.18154734232689407
KNFILKRLFWK	11	Unmodified	_KNFILKRLFWK_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.30999755859375	3	498.309885	1491.90782	0.31717	0.00015805	0.22642	0.00011283	0.54359	0.00027088	498.3098867039719	93.838	0.46288	93.925	93.682	94.145	0.086678					145	35	5	0	0	0	0.48247	1	25002	25002		0.40827	0.40827	1	2571100			18825	7524	10667	10668	23760	23760					0.18154734232689407
KNFILKRLFWK	11	Unmodified	_KNFILKRLFWK_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3099060058594	3	498.309885	1491.90782	0.33299	0.00016593	-0.03393	-1.6908E-05	0.29906	0.00014902	498.3097182692749	93.422	1.1415	93.508	92.623	93.765	0.08667					256	97	5	0	0	0	0.33334	1	24690	24690		1.2148	1.12	1	3131300			18826	7524	10667	10668	23761	23761					0.18154734232689407
KNFILKRLFWK	11	Unmodified	_KNFILKRLFWK_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.3101501464844	3	498.309885	1491.90782	0.49721	0.00024776	-0.095527	-4.7602E-05	0.40168	0.00020016	498.3097564769937	91.087	0.87456	91.087	90.591	91.465	0.00046539					161	62	3	0	0	0	0.47633	3	24241	24068;24111;24241		1.2148	0.70888	1	923640			18827	7524	10667	10668	23762;23763;23764	23764					0.18154734232689407
KNFILKRLFWK	11	Unmodified	_KNFILKRLFWK_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.30999755859375	3	498.309885	1491.90782	0.51587	0.00025706	-0.13074	-6.515E-05	0.38513	0.00019191	498.30971535667453	91.766	1.1883	91.766	91.42	92.608	0.00047302					217	79	4	0	0	0	0.47633	4	24369	24283;24324;24369;24461		1.2148	1.1315	1	1482100			18828	7524	10667	10668	23765;23766;23767;23768	23767					0.18154734232689407
KNFILKRLFWK	11	Unmodified	_KNFILKRLFWK_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.30999755859375	3	498.309885	1491.90782	0.46933	0.00023387	-0.011703	-5.8315E-06	0.45762	0.00022804	498.3097682473093	93.397	2.7067	93.397	92.588	95.295	-0.00051117					749	228	4	0	0	0	0.47633	5	24681	24681;25028;25067;25106;25292		1.2148	1.2148	1	2732900			18829	7524	10667	10668	23769;23770;23771;23772;23773	23769					0.18154734232689407
KNFKIVVYGII	11	Unmodified	_KNFKIVVYGII_					0	0	0			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.90606689453125	3	431.935825	1292.78564	-0.024806	-1.0715E-05	-3.0357	-0.0013112	-3.0605	-0.0013219	431.9341358864368	40.988	0.077751	41.078	41.029	41.106	0.090252					4	2	2	0	0	0	0.33122	1	8791	8791		4.4062	3.1913	1	91354	+		18830	17006	10668	10669	23774	23774					0.1509627243046907
KNFKKIYW	8	Unmodified	_KNFKKIYW_					0	0	0		ENSG00000153993|ENST00000284136|SEMA3D	ENSG00000153993|ENST00000284136|SEMA3D	ENSG00000153993|ENST00000284136|SEMA3D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.298095703125	2	563.824027	1125.6335	-0.16534	-9.3221E-05	2.7847	0.0015701	2.6194	0.0014769	563.8254165957379	12.813	0.17906	12.746	12.64	12.819	-0.067496					8	5	2	0	0	0	0.34434	1	217	217		0.79363	0	1	31814			18831	5099	10669	10670	23775	23775					0.07570916473582656
KNFKKIYW	8	Unmodified	_KNFKKIYW_					0	0	0		ENSG00000153993|ENST00000284136|SEMA3D	ENSG00000153993|ENST00000284136|SEMA3D	ENSG00000153993|ENST00000284136|SEMA3D	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	563.824027	1125.6335	0.05874	3.3119E-05	2.2298	0.0012572	2.2885	0.0012903	563.8250448633784	12.809	0.17429	12.71	12.611	12.785	-0.099291	-0.017882	-0.00022766	NaN	0.79363	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24812			18832	5099	10669	10670							0.07570916473582656
KNFPENQIL	9	Unmodified	_KNFPENQIL_					0	0	0		nc|ENSG00000284762|O95263-2|PDE8B;nc|ENSG00000284762|O95263-3|PDE8B;nc|ENSG00000284762|O95263-6|PDE8B;ENSG00000113231|ENST00000264917|PDE8B;nc|ENSG00000284762|O95263-5|PDE8B;nc|ENSG00000284762|O95263-4|PDE8B	nc|ENSG00000284762|O95263-2|PDE8B	nc|ENSG00000284762|O95263-2|PDE8B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7980346679688	2	551.798206	1101.58186	0.032768	1.8081E-05	-0.21607	-0.00011923	-0.1833	-0.00010115	551.798027901235	13.349	0.33997	13.349	13.227	13.567	0					20	11	3	0	0	0	0.33276	1	413	413		3.9444	0	1	112720			18833	2481	10670	10671	23776	23776					0.03513127989003806
KNFSSYVR	8	Unmodified	_KNFSSYVR_					0	0	0			REV__ENST00000268182.9_1_15:91044979-91045129:+|nuORF	REV__ENST00000268182.9_1_15:91044979-91045129:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8187561035156	2	500.764166	999.513779	0.1085	5.4332E-05	-0.071743	-3.5926E-05	0.036756	1.8406E-05	500.7641024890474	42.803	0.46028	42.894	42.663	43.123	0.091362					24	16	2	0	0	0	0.34039	1	9334	9334		10.824	0	1	183140	+		18834	19663	10671	10672	23777	23777					0.014003031290030776
KNFVIKPID	9	Unmodified	_KNFVIKPID_					0	0	0		ENST00000511640.1_1_5:25909808-25910855:+|nuORF	ENST00000511640.1_1_5:25909808-25910855:+|nuORF	ENST00000511640.1_1_5:25909808-25910855:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.8189086914062	2	537.321317	1072.62808	-0.11408	-6.13E-05	-0.30626	-0.00016456	-0.42034	-0.00022586	537.3210370631992	34.398	1.2523	34.398	34.023	35.276	0					116	44	4	0	0	0	0.25314	1	6724	6724		15.847	1.0089	1	3084000			18835	11387	10672	10673	23778	23778					0.09467192891065679
KNGIRLLPR	9	Unmodified	_KNGIRLLPR_					0	0	0		HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;HMCN1|p.A5600Gfs*20|1|0.2|ENSG00000143341|chr1:186189767-186189768|-/G|frameshift_variant;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.30078125	2	533.845825	1065.6771	0.34694	0.00018521	-0.23732	-0.00012669	0.10962	5.8521E-05	533.8455978588615	24.396	0.56513	24.357	24.108	24.674	-0.038927					39	19	3	0	0	0	0.25938	1	3665	3665		4.3292	2.2695	1	100310			18836	4502	10673	10674	23779	23779					0.1468852597070054
KNGLKFPT	8	Unmodified	_KNGLKFPT_					0	0	0		nc|ENSG00000189157|Q6ZV65-1|FAM47E;ENSG00000189157|ENST00000424749|FAM47E	nc|ENSG00000189157|Q6ZV65-1|FAM47E	nc|ENSG00000189157|Q6ZV65-1|FAM47E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.7662353515625	2	452.766178	903.517802	-0.19092	-8.6442E-05	0.12623	5.715E-05	-0.064694	-2.9291E-05	452.7661625716791	39.304	0.90709	39.304	38.844	39.751	0					63	32	3	0	0	0	0.22	1	8292	8292		39.957	1.8061	1	813400			18837	7804	10674	10675	23780	23780					0.06218392622713509
KNGLKFPT	8	Unmodified	_KNGLKFPT_					0	0	0		nc|ENSG00000189157|Q6ZV65-1|FAM47E;ENSG00000189157|ENST00000424749|FAM47E	nc|ENSG00000189157|Q6ZV65-1|FAM47E	nc|ENSG00000189157|Q6ZV65-1|FAM47E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.7662048339844	2	452.766178	903.517802	0.0087085	3.9429E-06	-0.032964	-1.4925E-05	-0.024256	-1.0982E-05	452.7660589809245	39.125	0.77401	39.217	38.888	39.662	0.09267					62	27	3	0	0	0	0.13277	2	8265	8220;8265		54.774	16.622	1	1071400			18838	7804	10674	10675	23781;23782	23782					0.06218392622713509
KNGLKFPT	8	Unmodified	_KNGLKFPT_					0	0	0		nc|ENSG00000189157|Q6ZV65-1|FAM47E;ENSG00000189157|ENST00000424749|FAM47E	nc|ENSG00000189157|Q6ZV65-1|FAM47E	nc|ENSG00000189157|Q6ZV65-1|FAM47E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7661437988281	2	452.766178	903.517802	0.27512	0.00012456	-0.2783	-0.00012601	-0.0031842	-1.4417E-06	452.76599659410766	39.139	0.72686	39.238	38.895	39.622	0.099407					58	25	3	0	0	0	0.22	2	8203	8203;8253		39.957	3.9131	1	1041200			18839	7804	10674	10675	23783;23784	23783					0.06218392622713509
KNGNISGLLY	10	Unmodified	_KNGNISGLLY_					0	0	0		ENST00000425128.6_1_3:27417698-27417842:-|nuORF	ENST00000425128.6_1_3:27417698-27417842:-|nuORF	ENST00000425128.6_1_3:27417698-27417842:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8329467773438	2	539.798206	1077.58186	0.68977	0.00037234	1.0576	0.0005709	1.7474	0.00094323	540.3004944813243	84.727	0.57335	84.808	84.501	85.075	0.080879					37	22	2	0	0	0	0.26638	1	22241	22241		24.021	8.7721	1	88695			18840	10404	10675	10676	23785	23785					0.0461712798901317
KNGQKVGEFS	10	Unmodified	_KNGQKVGEFS_					0	0	0		TXN|p.K82N|1|0.16|ENSG00000136810|chr9:110244787-110244787|C/G|missense_variant	TXN|p.K82N|1|0.16|ENSG00000136810|chr9:110244787-110244787|C/G|missense_variant	TXN|p.K82N|1|0.16|ENSG00000136810|chr9:110244787-110244787|C/G|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.2677612304688	2	547.285463	1092.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.255	1	32.31	31.81	32.81	0.054371								0	0	0	0.34209	1	6120	6120		18.146	1.2041	1				18841	23406	10676	10677	23786	23786					0.01379653466574382
KNHFHSMCS	9	Unmodified	_KNHFHSMCS_					0	0	0		ENST00000491040.5_1_20:33934876-33981976:-|nuORF	ENST00000491040.5_1_20:33934876-33981976:-|nuORF	ENST00000491040.5_1_20:33934876-33981976:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.9140014648438	2	545.731486	1089.44842	0.82469	0.00045006	-0.97422	-0.00053166	-0.14954	-8.1606E-05	545.7308875544712	20.484	0.40722	20.374	20.259	20.666	-0.11003					20	14	2	0	0	0	0.25988	1	2522	2522		3.9444	1.3669	1	97227			18842	11170	10677	10678	23787	23787					-0.09272757660005482
KNIANKLEK	9	Unmodified	_KNIANKLEK_					0	0	0			REV__ENSG00000176231|ENST00000322107|OR10H4	REV__ENSG00000176231|ENST00000322107|OR10H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3092651367188	2	529.321848	1056.62914	0.36383	0.00019258	-0.1259	-6.6643E-05	0.23793	0.00012594	529.3221797173316	22.293	1.6261	22.293	22.017	23.643	0					166	56	5	0	0	0	0.22935	1	3309	3309		19.362	2.249	1	11684000	+		18843	17679	10678	10679	23788	23788					0.10309407260001535
KNILFVITK	9	Unmodified	_KNILFVITK_					0	0	0		ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;ENSG00000253506|ENST00000521764|NACA2;nc|ENSG00000196531|E9PAV3-2|NACA;ENST00000419462.1_1_8:102381113-102381542:+|nuORF;nc|ENSG00000228224|Q9BZK3|NACA4P	ENSG00000196531|ENST00000454682|NACA;ENST00000419462.1_1_8:102381113-102381542:+|nuORF	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.83935546875	2	538.347335	1074.68012	0.7357	0.00039606	-0.0086092	-4.6347E-06	0.72709	0.00039143	538.3471772042478	47.644	0.27832	47.644	47.493	47.771	0					15	9	2	0	0	0	0.13296	1	10819	10819		33.445	2.8084	1	174650			18844	7875;10351	10679	10680	23789	23789					0.14576356304837645
KNILFVITK	9	Unmodified	_KNILFVITK_					0	0	0		ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;ENSG00000253506|ENST00000521764|NACA2;nc|ENSG00000196531|E9PAV3-2|NACA;ENST00000419462.1_1_8:102381113-102381542:+|nuORF;nc|ENSG00000228224|Q9BZK3|NACA4P	ENSG00000196531|ENST00000454682|NACA;ENST00000419462.1_1_8:102381113-102381542:+|nuORF	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8392944335938	2	538.347335	1074.68012	0.62559	0.00033679	0.15283	8.2274E-05	0.77842	0.00041906	538.3473685826928	47.542	0.29023	47.589	47.482	47.772	0.04752					16	10	2	0	0	0	0.038291	1	10814	10814		57.249	21.122	1	164310			18845	7875;10351	10679	10680	23790	23790					0.14576356304837645
KNILFVITK	9	Unmodified	_KNILFVITK_					0	0	0		ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;ENSG00000253506|ENST00000521764|NACA2;nc|ENSG00000196531|E9PAV3-2|NACA;ENST00000419462.1_1_8:102381113-102381542:+|nuORF;nc|ENSG00000228224|Q9BZK3|NACA4P	ENSG00000196531|ENST00000454682|NACA;ENST00000419462.1_1_8:102381113-102381542:+|nuORF	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8390502929688	2	538.347335	1074.68012	0.85384	0.00045966	-0.46635	-0.00025106	0.3875	0.00020861	538.3470904258659	47.584	0.29076	47.628	47.455	47.746	0.04332					15	10	2	0	0	0	0.16863	1	10820	10820		28.234	4.2131	1	194900			18846	7875;10351	10679	10680	23791	23791					0.14576356304837645
KNKHETQYRKL	11	Unmodified	_KNKHETQYRKL_					0	0	0			REV__ENST00000462558.5_1_7:97937677-98030347:-|nuORF	REV__ENST00000462558.5_1_7:97937677-98030347:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.75872802734375	3	482.272158	1443.79465	0.16952	8.1754E-05	0.26778	0.00012914	0.4373	0.0002109	482.2722600940542	33.104	0.50486	33.16	32.864	33.369	0.055309					31	17	2	0	0	0	0.3325	1	6309	6309		4.1166	4.1166	1	157910	+		18847	13359	10680	10681	23792	23792					0.09050014048852972
KNKHETQYRKL	11	Unmodified	_KNKHETQYRKL_					0	0	0			REV__ENST00000462558.5_1_7:97937677-98030347:-|nuORF	REV__ENST00000462558.5_1_7:97937677-98030347:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7585754394531	3	482.272158	1443.79465	0.18505	8.9242E-05	0.1071	5.165E-05	0.29214	0.00014089	482.27221578986206	33.173	0.44379	33.227	32.931	33.375	0.054371					25	15	2	0	0	0	0.3331	1	6310	6310		2.2527	0.92309	1	123690	+		18848	13359	10680	10681	23793	23793					0.09050014048852972
KNKKSSNR	8	Unmodified	_KNKKSSNR_					0	0	0			REV__ENSG00000134744|ENST00000257177|TUT4	REV__ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2805480957031	2	481.280515	960.546476	0.32393	0.0001559	-0.48775	-0.00023474	-0.16381	-7.884E-05	481.28010000544356	86.322	0.66935	86.406	86.082	86.751	0.084251					46	26	2	0	0	0	0.46022	2	22696	22696;22744		2.3027	0	1	291830	+		18849	15695	10681	10682	23794;23795	23794					0.06462510251856202
KNKNPTDP	8	Unmodified	_KNKNPTDP_					0	0	0		nc|ENSG00000102466|Q92915-2|FGF14	nc|ENSG00000102466|Q92915-2|FGF14	nc|ENSG00000102466|Q92915-2|FGF14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7935485839844	2	457.240524	912.466495	0.022026	1.0071E-05	-2.414	-0.0011038	-2.392	-0.0010937	457.2394384883463	33.837	0.33271	33.904	33.739	34.071	0.066704					17	11	2	0	0	0	0.34167	1	6636	6636		11.64	11.039	1	90262			18850	12626	10682	10683	23796	23796					0.0067602385800000775
KNKQKPLE	8	Unmodified	_KNKQKPLE_					0	0	0			REV__ENST00000216121.11_1_22:29951269-29951446:-|nuORF	REV__ENST00000216121.11_1_22:29951269-29951446:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2727966308594	2	492.795466	983.57638	0.16856	8.3064E-05	-0.50184	-0.00024731	-0.33329	-0.00016424	492.7950369670663	16.411	0.37458	16.297	16.047	16.421	-0.11434					22	12	2	0	0	0	0.34353	1	1298	1298		4.756	0	1	75298	+		18851	19409	10683	10684	23797	23797					0.08393449197171776
KNKQSSLKK	9	Unmodified	_KNKQSSLKK_					0	0	0		ENST00000322940.10_1_9:111702093-111702270:+|nuORF	ENST00000322940.10_1_9:111702093-111702270:+|nuORF	ENST00000322940.10_1_9:111702093-111702270:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.8270263671875	2	530.827298	1059.64004	0.14951	7.9362E-05	-0.11399	-6.0508E-05	0.035517	1.8854E-05	530.8270611117239	12.705	0.20132	12.705	12.582	12.783	0					15	6	3	0	0	0	0.33719	1	220	220		3.2813	0.28607	1	94734			18852	9395	10684	10685	23798	23798					0.11260809634291036
KNKVENKRIAV	11	Unmodified	_KNKVENKRIAV_					0	0	0		ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8982543945312	2	649.898786	1297.78302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.439	1	93.526	93.026	94.026	0.08667								0	0	0	0.366	1	24885	24885		0.26902	0	1				18853	5931	10685	10686	23799	23799					0.14603817025499666
KNLFLWLFL	9	Unmodified	_KNLFLWLFL_					0	0	0			REV__ENST00000567780.1_1_12:54377735-54378077:-|nuORF	REV__ENST00000567780.1_1_12:54377735-54378077:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8595581054688	2	597.357702	1192.70085	0.54611	0.00032622	0.80047	0.00047817	1.3466	0.00080439	597.3585437535233	90.125	1.0564	90.216	89.796	90.852	0.090675					218	82	4	0	0	0	0.34536	1	23785	23785		2.0598	0	1	1254300	+		18854	22383	10686	10687	23800	23800					0.11220946684488808
KNLFLWLFL	9	Unmodified	_KNLFLWLFL_					0	0	0			REV__ENST00000567780.1_1_12:54377735-54378077:-|nuORF	REV__ENST00000567780.1_1_12:54377735-54378077:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8587036132812	2	597.357702	1192.70085	0.51945	0.0003103	0.021496	1.2841E-05	0.54095	0.00032314	597.3586078268477	90.167	1.2978	90.167	89.63	90.927	0.0003891					299	105	4	0	0	0	0.30623	1	23987	23987		7.9102	0	1	970830	+		18855	22383	10686	10687	23801	23801					0.11220946684488808
KNLFLWLFL	9	Unmodified	_KNLFLWLFL_					0	0	0			REV__ENST00000567780.1_1_12:54377735-54378077:-|nuORF	REV__ENST00000567780.1_1_12:54377735-54378077:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	597.357702	1192.70085	0.54611	0.00032622	0.80047	0.00047817	1.3466	0.00080439	597.3585437535233	90.125	1.0564	90.216	89.796	90.852	0.090675	0.026535	0.000316	NaN	2.0598	218	82	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1254300	+		18856	22383	10686	10687							0.11220946684488808
KNLKAHASDP	10	Unmodified	_KNLKAHASDP_					0	0	0		ENSG00000203907|ENST00000370359|OOEP	ENSG00000203907|ENST00000370359|OOEP	ENSG00000203907|ENST00000370359|OOEP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2844848632812	2	540.793455	1079.57236	0.37819	0.00020452	-0.25236	-0.00013647	0.12584	6.8051E-05	540.7932052381824	15.938	0.50723	15.875	15.67	16.177	-0.062534					44	17	4	0	0	0	0.41085	1	1196	1196		1.4819	0.28856	1	170440			18857	8191	10687	10688	23802	23802					0.035753597034727136
KNLKAHASDP	10	Unmodified	_KNLKAHASDP_					0	0	0		ENSG00000203907|ENST00000370359|OOEP	ENSG00000203907|ENST00000370359|OOEP	ENSG00000203907|ENST00000370359|OOEP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	540.793455	1079.57236	0.2844	0.0001538	0.010258	5.5472E-06	0.29466	0.00015935	540.7932262333702	15.905	0.56295	15.905	15.679	16.242	0	0.015894	0.0001179	NaN	1.4819	51	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139550			18858	8191	10687	10688							0.035753597034727136
KNLKAHASDP	10	Unmodified	_KNLKAHASDP_					0	0	0		ENSG00000203907|ENST00000370359|OOEP	ENSG00000203907|ENST00000370359|OOEP	ENSG00000203907|ENST00000370359|OOEP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	540.793455	1079.57236	0.27639	0.00014947	0.021964	1.1878E-05	0.29836	0.00016135	540.7932697815129	16.002	0.55557	15.888	15.692	16.247	-0.11434	-0.0019274	0.00013057	NaN	1.4819	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158140			18859	8191	10687	10688							0.035753597034727136
KNLNIVNR	8	Unmodified	_KNLNIVNR_					0	0	0		nc|ENSG00000111837|P20794-3|MAK;nc|ENSG00000111837|P20794|MAK;ENSG00000111837|ENST00000354489|MAK	nc|ENSG00000111837|P20794-3|MAK	nc|ENSG00000111837|P20794-3|MAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2855224609375	2	485.793258	969.571963	-1.2476	-0.00060606	1.9739	0.00095891	0.72634	0.00035285	485.79352121992434	34.581	0.35667	34.657	34.576	34.933	0.075306					14	12	2	0	0	0	0.41097	1	6826	6826		18.135	2.2878	1	47262			18860	2393	10688	10689	23803	23803					0.08595984774274257
KNLNRFTRMKQ	11	Unmodified	_KNLNRFTRMKQ_					0	0	0		L1P2_dup354|chr3:177908608-177914071:+|1.579459827711941|0.1324791782257567|3.58|528.0|45|1|sense	L1P2_dup354|chr3:177908608-177914071:+|1.579459827711941|0.1324791782257567|3.58|528.0|45|1|sense	L1P2_dup354|chr3:177908608-177914071:+|1.579459827711941|0.1324791782257567|3.58|528.0|45|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.80535888671875	3	479.269872	1434.78779	-1.3395	-0.000642	-0.25846	-0.00012387	-1.598	-0.00076587	479.2700352519284	34.797	0.3613	34.797	34.672	35.033	0					18	12	2	0	0	0	0.33296	1	6904	6904		2.6312	0.37851	1	104640			18861	12472	10689	10690	23804	23804					0.08778377896601341
KNLTLERHQL	10	Unmodified	_KNLTLERHQL_					0	0	0		nc|ENSG00000167196|Q8NEZ5-3|FBXO22;ENSG00000167196|ENST00000308275|FBXO22	nc|ENSG00000167196|Q8NEZ5-3|FBXO22	nc|ENSG00000167196|Q8NEZ5-3|FBXO22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.92047119140625	3	417.910449	1250.70952	-0.16612	-6.9424E-05	-0.021693	-9.0658E-06	-0.18781	-7.8489E-05	417.91034919266383	40.951	0.91006	40.951	40.445	41.355	0					58	33	3	0	0	0	0.35961	1	8741	8741		10.899	1.355	1	619460			18862	6157	10690	10691	23805	23805					0.0941926858304214
KNLTLERHQL	10	Unmodified	_KNLTLERHQL_					0	0	0		nc|ENSG00000167196|Q8NEZ5-3|FBXO22;ENSG00000167196|ENST00000308275|FBXO22	nc|ENSG00000167196|Q8NEZ5-3|FBXO22	nc|ENSG00000167196|Q8NEZ5-3|FBXO22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.9202575683594	3	417.910449	1250.70952	0.27192	0.00011364	-0.56788	-0.00023732	-0.29596	-0.00012368	417.91020510025857	40.737	0.85366	40.83	40.448	41.301	0.09267					65	31	3	0	0	0	0.31701	1	8683	8683		10.899	2.6125	1	656840			18863	6157	10690	10691	23806	23806					0.0941926858304214
KNLVKRFHC	9	Unmodified	_KNLVKRFHC_					0	0	0			REV__nc|ENSG00000140279|Q9NRD8|DUOX2	REV__nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2898559570312	2	572.824035	1143.63352	0.081223	4.6527E-05	-1.6752	-0.00095958	-1.594	-0.00091305	573.3248662449648	33.361	0.13774	33.428	33.358	33.495	0.066704					7	4	2	0	0	0	0.25526	1	6439	6439		7.9102	1.187	1	56666	+		18864	16024	10691	10692	23807	23807					0.0674459320191545
KNNLKKYN	8	Unmodified	_KNNLKKYN_					0	0	0		ENSG00000138592|ENST00000307179|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF;nc|ENSG00000138592|P40818-2|USP8;ENST00000560379.1_1_15:50790733-50791282:+|nuORF	ENSG00000138592|ENST00000307179|USP8;ENST00000560379.1_1_15:50790733-50791282:+|nuORF	ENSG00000138592|ENST00000307179|USP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.28411865234375	2	511.293091	1020.57163	-0.078432	-4.0102E-05	-0.14383	-7.3541E-05	-0.22226	-0.00011364	511.2929625713825	34.349	0.36495	34.349	34.135	34.5	0					17	12	2	0	0	0	0.4419	1	6751	6751		8.5933	3.3626	1	63117			18865	4158;11897	10692	10693	23808	23808					0.06216565054410239
KNNLKKYN	8	Unmodified	_KNNLKKYN_					0	0	0		ENSG00000138592|ENST00000307179|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF;nc|ENSG00000138592|P40818-2|USP8;ENST00000560379.1_1_15:50790733-50791282:+|nuORF	ENSG00000138592|ENST00000307179|USP8;ENST00000560379.1_1_15:50790733-50791282:+|nuORF	ENSG00000138592|ENST00000307179|USP8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	511.293091	1020.57163	-0.13721	-7.0155E-05	-0.19784	-0.00010116	-0.33505	-0.00017131	511.29282326890757	34.253	0.33782	34.32	34.176	34.513	0.06636	-0.014646	-3.5248E-05	NaN	8.5933	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93752			18866	4158;11897	10692	10693							0.06216565054410239
KNNPKFLAI	9	Unmodified	_KNNPKFLAI_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.813720703125	2	522.813659	1043.61277	0.66786	0.00034917	-0.12462	-6.5153E-05	0.54324	0.00028402	522.8134706511084	37.828	0.84446	37.828	37.503	38.347	0					73	29	4	0	0	0	0.0011817	2	7783	7783;7832		120.45	78.611	1	1141100			18867	6750	10693	10694	23809;23810	23809					0.09270326093883341
KNNPKFLAI	9	Unmodified	_KNNPKFLAI_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8140869140625	2	522.813659	1043.61277	0.48743	0.00025483	-0.033174	-1.7344E-05	0.45425	0.00023749	522.8135893440536	37.675	0.87165	37.766	37.475	38.347	0.090881					84	31	4	0	0	0	0.0011817	2	7753	7753;7806		120.45	78.611	1	1215100			18868	6750	10693	10694	23811;23812	23811					0.09270326093883341
KNNPKFLAI	9	Unmodified	_KNNPKFLAI_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8139038085938	2	522.813659	1043.61277	0.42694	0.00022321	-0.0052979	-2.7698E-06	0.42165	0.00022044	522.8136066073282	37.632	0.90116	37.729	37.477	38.378	0.097527					72	32	3	0	0	0	0.0028127	2	7781	7733;7781		103.75	61.909	1	1167600			18869	6750	10693	10694	23813;23814	23814					0.09270326093883341
KNPWSRTRTR	10	Unmodified	_KNPWSRTRTR_					0	0	0		ENST00000446986.1_1_X:118601674-118602110:-|nuORF;ENST00000395539.2_1_X:118602017-118602158:-|nuORF	ENST00000446986.1_1_X:118601674-118602110:-|nuORF	ENST00000446986.1_1_X:118601674-118602110:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7802734375	3	434.577693	1300.71125	-0.19954	-8.6717E-05	2.6563	0.0011544	2.4568	0.0010677	434.913245435295	33.967	0.32962	34.034	33.852	34.181	0.066704					18	11	2	0	0	0	0.31994	1	6642	6642		3.0723	0.22898	1	135680			18870	10094	10694	10695	23815	23815					0.07292322391617745
KNQFGIWD	8	Unmodified	_KNQFGIWD_					0	0	0			REV__ENST00000540743.1_1_12:10010036-10015170:-|nuORF	REV__ENST00000540743.1_1_12:10010036-10015170:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7783508300781	2	504.250892	1006.48723	0.10354	5.2209E-05	1.5853	0.00079941	1.6889	0.00085162	504.25131158362143	15.801	0.51904	15.691	15.38	15.899	-0.10981					33	17	2	0	0	0	0.34247	1	1137	1137		8.5933	2.2392	1	39849	+		18871	14687	10695	10696	23816	23816					-0.01575385762339465
KNQKEILLKQK	11	Unmodified	_KNQKEILLKQK_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2712707519531	3	457.289038	1368.84528	0.29183	0.00013345	-0.86489	-0.00039551	-0.57307	-0.00026206	457.6232931949625	37.194	0.53732	37.287	37.086	37.624	0.093014					44	19	3	0	0	0	0.33207	1	7608	7608		5.5233	1.1171	1	634420			18872	6020	10696	10697	23817	23817					0.17561543373835775
KNQKGNTQYI	10	Unmodified	_KNQKGNTQYI_					0	0	0			REV__L1PA7_dup4105|chr5:32794707-32799584:+|1.4734764400816625|0.3370285026521366|2.13|528.0|115|3|sense	REV__L1PA7_dup4105|chr5:32794707-32799584:+|1.4734764400816625|0.3370285026521366|2.13|528.0|115|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3191528320312	2	597.317294	1192.62004	0.13255	7.9176E-05	2.7487	0.0016419	2.8813	0.001721	597.3190006940923	13.152	0.27794	13.152	13.031	13.309	0					17	9	3	0	0	0	0.41168	1	357	357		1.3295	0.36726	1	43468	+		18873	22825	10697	10698	23818	23818					0.03143013903672909
KNQKGNTQYI	10	Unmodified	_KNQKGNTQYI_					0	0	0			REV__L1PA7_dup4105|chr5:32794707-32799584:+|1.4734764400816625|0.3370285026521366|2.13|528.0|115|3|sense	REV__L1PA7_dup4105|chr5:32794707-32799584:+|1.4734764400816625|0.3370285026521366|2.13|528.0|115|3|sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	597.317294	1192.62004	0.13255	7.9176E-05	2.7487	0.0016419	2.8813	0.001721	597.3190006940923	13.152	0.27794	13.152	13.031	13.309	0	0.0055939	5.6963E-05	NaN	1.3295	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43468	+		18874	22825	10697	10698							0.03143013903672909
KNQKGNTQYI	10	Unmodified	_KNQKGNTQYI_					0	0	0			REV__L1PA7_dup4105|chr5:32794707-32799584:+|1.4734764400816625|0.3370285026521366|2.13|528.0|115|3|sense	REV__L1PA7_dup4105|chr5:32794707-32799584:+|1.4734764400816625|0.3370285026521366|2.13|528.0|115|3|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	597.317294	1192.62004	0.1537	9.1805E-05	2.6516	0.0015839	2.8053	0.0016757	597.3186295635259	13.24	0.20701	13.141	13.042	13.249	-0.099291	-0.0055939	-5.9065E-05	NaN	1.3295	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53648	+		18875	22825	10697	10698							0.03143013903672909
KNQLGLYPY	9	Unmodified	_KNQLGLYPY_					0	0	0		nc|ENSG00000243477|O43820-2|HYAL3;ENSG00000186792|ENST00000336307|HYAL3	nc|ENSG00000243477|O43820-2|HYAL3	nc|ENSG00000243477|O43820-2|HYAL3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.306396484375	2	548.295299	1094.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.071	1	16.008	15.508	16.508	-0.062534								0	0	0	0.24522	1	1216	1216		7.9102	2.6795	1				18876	7641	10698	10699	23819	23819					0.032540294773070855
KNQLSPETMK	10	Unmodified	_KNQLSPETMK_					0	0	0			REV__nc|ENSG00000119684|Q9UHC1-2|MLH3	REV__nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.2904052734375	2	588.308081	1174.60161	0.68196	0.0004012	0.1412	8.3068E-05	0.82316	0.00048427	588.3081552328157	45.843	1.3366	45.843	45.476	46.813	0					156	48	5	0	0	0	0.3258	3	10394	10394;10442;10499		17.113	17.113	1	17379000	+		18877	15052	10699	10700	23820;23821;23822	23820					0.02129135937434512
KNQYKLKKG	9	Unmodified	_KNQYKLKKG_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.2916259765625	2	553.837665	1105.66078	-0.029936	-1.658E-05	-0.14784	-8.1881E-05	-0.17778	-9.8461E-05	553.8373719564553	13.883	0.3001	13.778	13.633	13.933	-0.10466					25	10	3	0	0	0	0.26257	1	596	596		0.52476	0.066424	1	139730			18878	1422	10700	10701	23823	23823					0.11217400013924816
KNQYKLKKG	9	Unmodified	_KNQYKLKKG_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.837665	1105.66078	0.012116	6.7102E-06	-0.71563	-0.00039634	-0.70351	-0.00038963	553.8370563083392	13.783	0.30205	13.783	13.66	13.962	0	-0.010978	-0.00033329	NaN	0.52476	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138600			18879	1422	10700	10701							0.11217400013924816
KNRCPKGAQCL	11	Unmodified	_KNRCPKGAQCL_					0	0	0		nc|ENSG00000183560|A6ND01-2|IZUMO1R;ENSG00000183560|ENST00000687084|IZUMO1R	nc|ENSG00000183560|A6ND01-2|IZUMO1R	nc|ENSG00000183560|A6ND01-2|IZUMO1R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.2037658691406	3	406.546237	1216.61688	-0.25266	-0.00010272	2.2949	0.00093298	2.0422	0.00083026	406.5471839309413	17.598	0.43435	17.481	17.323	17.757	-0.11739					18	14	2	0	0	0	0.33236	1	1753	1753		4.4062	1.4109	1	34546			18880	7376	10701	10702	23824	23824					0.017237242536566555
KNRCPKGAQCL	11	Unmodified	_KNRCPKGAQCL_					0	0	0		nc|ENSG00000183560|A6ND01-2|IZUMO1R;ENSG00000183560|ENST00000687084|IZUMO1R	nc|ENSG00000183560|A6ND01-2|IZUMO1R	nc|ENSG00000183560|A6ND01-2|IZUMO1R	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	406.546237	1216.61688	-0.065053	-2.6447E-05	1.928	0.00078383	1.863	0.00075738	406.8812164753697	17.577	0.40848	17.517	17.18	17.588	-0.060429	0.018121	-0.00026187	NaN	4.4062	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26551			18881	7376	10701	10702							0.017237242536566555
KNRGKTGVRF	10	Unmodified	_KNRGKTGVRF_					0	0	0			REV__nc|ENSG00000109654|Q9C040|TRIM2	REV__nc|ENSG00000109654|Q9C040|TRIM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.2849731445312	2	581.843813	1161.67307	-0.0062603	-3.6425E-06	0.9334	0.00054309	0.92714	0.00053945	581.8441138632575	14.838	0.22857	14.773	14.618	14.846	-0.064413					13	7	2	0	0	0	0.32054	1	852	852		3.2813	0.97858	1	34042	+		18882	14647	10702	10703	23825	23825					0.09870436476990108
KNRKILFSS	9	Unmodified	_KNRKILFSS_					0	0	0			REV__nc|ENSG00000108107|P46779-4|RPL28	REV__nc|ENSG00000108107|P46779-4|RPL28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8300170898438	2	546.82984	1091.64513	0.29894	0.00016347	0.12451	6.8083E-05	0.42344	0.00023155	546.829720457391	18.375	0.68759	18.375	18.127	18.814	0					48	23	3	0	0	0	0.15219	1	1924	1924		30.637	3.0077	1	183310	+		18883	14584	10703	10704	23826	23826					0.10297113496881138
KNRPSTMR	8	Unmodified	_KNRPSTMR_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.26953125	2	495.269093	988.523633	0.20489	0.00010148	-0.2767	-0.00013704	-0.071812	-3.5566E-05	495.26882225896804	15.985	0.39107	15.923	15.73	16.121	-0.062534					32	13	3	0	0	0	0.44569	1	1207	1207		7.2892	0	1	75254	+		18884	19070	10704	10705	23827	23827					0.02891167862730981
KNRQWAPRR	9	Unmodified	_KNRQWAPRR_					0	0	0		ENST00000509460.2_1_22:25853295-25915989:+|nuORF	ENST00000509460.2_1_22:25853295-25915989:+|nuORF	ENST00000509460.2_1_22:25853295-25915989:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.36962890625	2	606.347055	1210.67956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.51	1	117.53	117.03	118.03	0.023476								0	0	0	0.2672	1	30454	30454		0.52476	0.066424	1				18885	11357	10705	10706	23828	23828					0.08264374428358678
KNSNIYKMP	9	Unmodified	_KNSNIYKMP_					0	0	0		ENSG00000141469|ENST00000321925|SLC14A1;nc|ENSG00000141469|Q13336-2|SLC14A1;ENST00000591541.2_1_18:43319470-43329913:+|nuORF	ENSG00000141469|ENST00000321925|SLC14A1;ENST00000591541.2_1_18:43319470-43329913:+|nuORF	ENSG00000141469|ENST00000321925|SLC14A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7733154296875	2	547.786784	1093.55902	0.35037	0.00019193	1.4297	0.00078316	1.7801	0.00097509	547.7877327977495	29.309	0.53107	29.323	29.033	29.564	0.013475					37	18	3	0	0	0	0.29176	1	5217	5217		10.074	0	1	166590			18886	4384;12187	10706	10707	23829	23829					0.015977855998926316
KNSSFNLHTL	10	Unmodified	_KNSSFNLHTL_					0	0	0			REV__ENSG00000173572|ENST00000342929|NLRP13	REV__ENSG00000173572|ENST00000342929|NLRP13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8043212890625	2	580.806562	1159.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.08	1	19.964	19.464	20.464	-0.11592								0	0	0	0.38187	1	2430	2430		1.3295	0	1		+		18887	17791	10707	10708	23830	23830					0.02515628874948561
KNSSLIQH	8	Unmodified	_KNSSLIQH_					0	0	0		ZFP2|p.G210Efs*18|1|0.11|ENSG00000198939|chr5:178931940-178931940|T/-|frameshift_variant;ENSG00000198939|ENST00000361362|ZFP2	ZFP2|p.G210Efs*18|1|0.11|ENSG00000198939|chr5:178931940-178931940|T/-|frameshift_variant	ZFP2|p.G210Efs*18|1|0.11|ENSG00000198939|chr5:178931940-178931940|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.27252197265625	2	463.756341	925.498129	-0.16843	-7.811E-05	-1.1767	-0.0005457	-1.3451	-0.00062381	463.7555346686122	13.947	0.17482	13.881	13.774	13.949	-0.066068					8	5	2	0	0	0	0.34131	1	548	548		7.9102	0	1	69383			18888	8168	10708	10709	23831	23831					0.03240016611948704
KNSSTKKKH	9	Unmodified	_KNSSTKKKH_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3009033203125	2	529.309272	1056.60399	0.43526	0.00023039	-0.32686	-0.00017301	0.10839	5.7374E-05	529.309084974058	23.158	0.68252	23.113	22.873	23.556	-0.044867					55	24	3	0	0	0	0.25989	1	3384	3384		14.838	4.0143	1	389270			18889	5192	10709	10710	23832	23832					0.07795352457424087
KNSVGFHI	8	Unmodified	_KNSVGFHI_					0	0	0		ENSG00000146530|ENST00000275358|VWDE	ENSG00000146530|ENST00000275358|VWDE	ENSG00000146530|ENST00000275358|VWDE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.72210693359375	2	451.248152	900.481751	0.25647	0.00011573	1.1053	0.00049876	1.3618	0.00061449	451.24874498649467	58.704	0.75428	58.704	58.269	59.024	0					53	25	3	0	0	0	0.33995	1	14227	14227		5.7604	0	1	347750			18890	4718	10710	10711	23833	23833					0.027529354458465605
KNTALIAP	8	Unmodified	_KNTALIAP_					0	0	0			REV__ENSG00000165392|ENST00000298139|WRN	REV__ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.93280029296875	2	414.252903	826.491253	0.51775	0.00021448	0.25568	0.00010592	0.77344	0.0003204	414.2531104210288	40.338	0.56531	40.431	40.02	40.585	0.09267					26	19	2	0	0	0	0.33993	1	8560	8560		3.9444	2.2918	1	166430	+		18891	17233	10711	10712	23834	23834					0.07106703731369635
KNTFSSRQIRS	11	Unmodified	_KNTFSSRQIRS_					0	0	0			REV__ENST00000442697.6_1_4:100821242-100821344:-|nuORF	REV__ENST00000442697.6_1_4:100821242-100821344:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7488708496094	3	441.909109	1322.7055	-0.15013	-6.6343E-05	-1.1414	-0.00050441	-1.2916	-0.00057076	441.9089172561401	13.727	0.53491	13.727	13.457	13.992	0					29	18	2	0	0	0	0.33326	1	447	447		1.4551	0.67859	1	37651	+		18892	21056	10712	10713	23835	23835					0.05705179089318335
KNTINEIIK	9	Unmodified	_KNTINEIIK_					0	0	0		ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2959594726562	2	536.821681	1071.62881	0.47973	0.00025753	-3.4784	-0.0018673	-2.9987	-0.0016098	536.8214325322509	30.728	0.47496	30.728	30.473	30.948	0					44	16	4	0	0	0	0.24471	1	5641	5641		17.113	3.2068	1	251600			18893	1300	10713	10714	23836	23836					0.09585987540117458
KNVESKLKF	9	Unmodified	_KNVESKLKF_					0	0	0			REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B	REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.824951171875	2	546.824224	1091.63389	0.58343	0.00031904	0.26256	0.00014357	0.84599	0.00046261	546.8242862574647	51.99	0.57217	52.04	51.817	52.389	0.050571					37	20	2	0	0	0	0.18208	1	12248	12248		26.268	5.8536	1	1260900	+		18894	18594	10714	10715	23837	23837					0.09174291402769086
KNVGKVLLV	9	Unmodified	_KNVGKVLLV_					0	0	0		nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1;VAT1|p.E376A|1|0.23|ENSG00000108828|chr17:43016116-43016116|T/G|missense_variant	nc|ENSG00000108828|Q99536-2|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.80291748046875	2	485.326402	968.638252	0.19692	9.557E-05	-0.50742	-0.00024627	-0.31051	-0.0001507	485.3261306119556	33.431	0.44538	33.431	33.119	33.564	0					24	15	2	0	0	0	0.17242	1	6463	6463		17.113	4.0704	1	166740			18895	2218	10715	10716	23838	23838					0.1526780061633417
KNVGKVLLV	9	Unmodified	_KNVGKVLLV_					0	0	0		nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1;VAT1|p.E376A|1|0.23|ENSG00000108828|chr17:43016116-43016116|T/G|missense_variant	nc|ENSG00000108828|Q99536-2|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.8026123046875	2	485.326402	968.638252	0.30822	0.00014959	-0.56583	-0.00027461	-0.25761	-0.00012503	485.3260803658986	33.268	0.4383	33.323	33.117	33.555	0.055309					26	15	2	0	0	0	0.1939	1	6424	6424		24.021	0	1	206440			18896	2218	10715	10716	23839	23839					0.1526780061633417
KNVHLKKDH	9	Unmodified	_KNVHLKKDH_					0	0	0		nc|ENSG00000198521|P17038-2|ZNF43;ENSG00000198521|ENST00000354959|ZNF43	nc|ENSG00000198521|P17038-2|ZNF43	nc|ENSG00000198521|P17038-2|ZNF43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.8250122070312	2	559.825089	1117.63563	-0.013563	-7.5926E-06	-0.027414	-1.5347E-05	-0.040976	-2.2939E-05	559.8249288502352	13.469	0.39117	13.37	13.217	13.608	-0.099291					22	13	3	0	0	0	0.33508	1	445	445		3.5965	0.31518	1	92363			18897	8085	10716	10717	23840	23840					0.08151345211376793
KNVIAETIK	9	Unmodified	_KNVIAETIK_					0	0	0		ENSG00000188761|ENST00000393316|BCL2L15	ENSG00000188761|ENST00000393316|BCL2L15	ENSG00000188761|ENST00000393316|BCL2L15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.31268310546875	2	508.310949	1014.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.509	1	98.509	98.009	99.009	0								0	0	0	0.25955	1	26358	26358		3.2813	0.97858	1				18898	7772	10717	10718	23841	23841					0.10062602511425212
KNVYRVGIFV	10	Unmodified	_KNVYRVGIFV_					0	0	0			REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8555297851562	2	597.853316	1193.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.967	1	94.965	94.465	95.465	-0.0020142								0	0	0	0.37581	1	25354	25354		3.9444	0.3479	1		+		18899	16022	10718	10719	23842	23842					0.10297973048022868
KNWFELDDE	9	Unmodified	_KNWFELDDE_					0	0	0			REV__nc|ENSG00000129295|Q86X45-2|DNAAF11	REV__nc|ENSG00000129295|Q86X45-2|DNAAF11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.2662963867188	2	598.266936	1194.51932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.939	1	14.829	14.329	15.329	-0.10981								0	0	0	0.26334	1	878	878		2.0598	0	1		+		18900	15409	10719	10720	23843	23843					-0.07016062869865891
KNWIWARVA	9	Unmodified	_KNWIWARVA_					0	0	0			REV__ENST00000521766.5_1_14:102695625-102698074:-|nuORF	REV__ENST00000521766.5_1_14:102695625-102698074:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.3241577148438	2	572.324725	1142.6349	0.017231	9.8619E-06	-0.84059	-0.00048109	-0.82336	-0.00047123	572.3243897686106	13.213	0.65152	13.114	12.841	13.492	-0.099291					63	22	5	0	0	0	0.31038	1	344	344		7.2892	0	1	1593100	+		18901	21882	10720	10721	23844	23844					0.06928550562292912
KNYYWLSFY	9	Unmodified	_KNYYWLSFY_					0	0	0			REV__ENST00000554628.5_1_14:88959357-89016761:-|nuORF	REV__ENST00000554628.5_1_14:88959357-89016761:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2499694824219	3	428.541363	1282.60226	-0.15079	-6.462E-05	-3.9084	-0.0016749	-4.0591	-0.0017395	428.5401515407635	33.124	0.52248	33.178	33.042	33.565	0.054375					21	18	2	0	0	0	0.25612	1	6484	6484		8.1555	5.5243	1	151650	+		18902	13737	10721	10722	23845	23845					-0.027737013512023623
KPACIKALT	9	Unmodified	_KPACIKALT_					0	0	0		nc|ENSG00000126858|Q8IXI2-5|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;nc|ENSG00000126858|Q8IXI2-6|RHOT1	nc|ENSG00000126858|Q8IXI2-5|RHOT1	nc|ENSG00000126858|Q8IXI2-5|RHOT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2942199707031	2	472.783513	943.552473	0.16907	7.9935E-05	-3.0534	-0.0014436	-2.8843	-0.0013636	472.7819889876446	49.179	0.13582	49.223	49.102	49.238	0.044891					6	4	2	0	0	0	0.24688	1	11313	11313		10.074	0	1	70311			18903	3296	10722	10723	23846	23846					0.07843892439143474
KPAEYGYVSL	10	Unmodified	_KPAEYGYVSL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.7925415039062	2	563.792589	1125.57063	0.53252	0.00030023	-0.12648	-7.1308E-05	0.40604	0.00022892	563.7924782323604	48.064	1.1486	48.064	47.38	48.528	0					79	40	3	0	0	0	0.020733	2	10992	10945;10992		70.929	41.847	1	3267600			18904	6613	10723	10724	23847;23848	23848					0.012863058948596517
KPAEYGYVSL	10	Unmodified	_KPAEYGYVSL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.793701171875	2	563.792589	1125.57063	0.76547	0.00043156	-0.27296	-0.00015389	0.49251	0.00027767	563.7923945440258	48.003	1.2248	48.05	47.349	48.573	0.047523					82	45	3	0	0	0	0.012937	3	10916	10916;10961;11012		79.427	51.798	1	3361900			18905	6613	10723	10724	23849;23850;23851	23849					0.012863058948596517
KPAEYGYVSL	10	Unmodified	_KPAEYGYVSL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7921752929688	2	563.792589	1125.57063	0.49118	0.00027692	-0.073032	-4.1175E-05	0.41815	0.00023575	563.7924774280547	47.943	1.1868	47.986	47.373	48.56	0.04332					89	44	3	0	0	0	0.0055648	2	10912	10912;10960		88.364	57.727	1	4520400			18906	6613	10723	10724	23852;23853	23852					0.012863058948596517
KPAFFAEKL	9	Unmodified	_KPAFFAEKL_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8027954101562	2	525.80276	1049.59097	0.44361	0.00023325	0.28447	0.00014958	0.72808	0.00038283	525.8026504737663	42.836	1.1397	42.836	42.355	43.494	0					137	41	5	0	0	0	0.0008224	1	9327	9327		125.04	36.134	1	2910100			18907	3839	10724	10725	23854	23854					0.06815521345333764
KPAFFAEKL	9	Unmodified	_KPAFFAEKL_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8028564453125	2	525.80276	1049.59097	0.36343	0.00019109	0.30561	0.00016069	0.66904	0.00035178	525.8027018297927	42.502	1.07	42.587	42.093	43.163	0.085201					136	38	5	0	0	0	5.4053E-05	2	9231	9231;9279		148.27	80.187	1	2965400			18908	3839	10724	10725	23855;23856	23855					0.06815521345333764
KPAFFAEKL	9	Unmodified	_KPAFFAEKL_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.802734375	2	525.80276	1049.59097	0.44597	0.00023449	0.28397	0.00014931	0.72994	0.0003838	525.8026538293392	42.419	1.1924	42.51	41.981	43.173	0.091362					142	42	5	0	0	0	1.6536E-07	1	9206	9206		173.69	95.537	1	2903600			18909	3839	10724	10725	23857	23857					0.06815521345333764
KPAFHDSCR	9	Unmodified	_KPAFHDSCR_					0	0	0		ENST00000354924.2_1_3:98073116-98073209:+|nuORF	ENST00000354924.2_1_3:98073116-98073209:+|nuORF	ENST00000354924.2_1_3:98073116-98073209:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7531127929688	2	530.753276	1059.492	0.1855	9.8457E-05	0.32238	0.00017111	0.50789	0.00026956	530.7532048728164	16.888	0.70657	16.774	16.476	17.183	-0.11434					54	25	3	0	0	0	0.33276	1	1515	1515		3.9444	1.3669	1	304830			18910	9604	10725	10726	23858	23858					-0.035368248912163835
KPAGPPGIL	9	Unmodified	_KPAGPPGIL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.26312255859375	2	425.263271	848.511988	-0.31098	-0.00013225	0.31917	0.00013573	0.0081818	3.4794E-06	425.2632913192306	38.516	0.86993	38.516	38.118	38.988	0					76	30	3	0	0	0	0.037693	1	8099	8099		57.471	13.064	1	1104300			18911	1574	10726	10727	23859	23859					0.08167294111046886
KPAGPPGIL	9	Unmodified	_KPAGPPGIL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.26324462890625	2	425.263271	848.511988	-0.047368	-2.0144E-05	-0.059525	-2.5314E-05	-0.10689	-4.5458E-05	425.26315185942633	38.471	0.84787	38.562	38.153	39.001	0.090881					79	30	3	0	0	0	0.068501	1	8076	8076		46.021	11.919	1	1301100			18912	1574	10726	10727	23860	23860					0.08167294111046886
KPAGPPGIL	9	Unmodified	_KPAGPPGIL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.2632751464844	2	425.263271	848.511988	0.024588	1.0456E-05	-0.061659	-2.6221E-05	-0.037071	-1.5765E-05	425.2631509087602	38.425	0.94736	38.523	38.037	38.984	0.097527					82	33	3	0	0	0	0.019896	1	8051	8051		64.236	13.381	1	1194600			18913	1574	10726	10727	23861	23861					0.08167294111046886
KPAGPPGILAL	11	Unmodified	_KPAGPPGILAL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3240356445312	2	517.32386	1032.63317	0.46586	0.000241	-0.30152	-0.00015598	0.16434	8.5018E-05	517.3237310872847	56.834	1.1816	56.834	56.423	57.605	0					144	43	5	0	0	0	0.0024532	4	13644	13596;13644;13693;13743		85.642	52.856	1	12333000			18914	1574	10727	10728	23862;23863;23864;23865	23863					0.11815496753706611
KPAGPPGILAL	11	Unmodified	_KPAGPPGILAL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3240356445312	2	517.32386	1032.63317	0.42651	0.00022064	-0.24039	-0.00012436	0.18612	9.6285E-05	517.3237453457511	56.733	1.2139	56.812	56.41	57.623	0.078674					141	44	5	0	0	0	0.0024532	3	13627	13574;13627;13675		85.642	45.692	1	12046000			18915	1574	10727	10728	23866;23867;23868	23867					0.11815496753706611
KPAGPPGILAL	11	Unmodified	_KPAGPPGILAL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.3240356445312	2	517.32386	1032.63317	0.64641	0.0003344	-0.33825	-0.00017498	0.30816	0.00015942	517.3236706393475	56.839	1.1773	56.82	56.403	57.58	-0.019081					138	42	5	0	0	0	0.0010547	3	13699	13648;13699;13754		96.111	58.137	1	12765000			18916	1574	10727	10728	23869;23870;23871	23870					0.11815496753706611
KPAGPPGPP	9	Unmodified	_KPAGPPGPP_					0	0	0			REV__nc|ENSG00000104973|Q71SY5-6|MED25	REV__nc|ENSG00000104973|Q71SY5-6|MED25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.1097106933594	2	409.231971	816.449388	0.042424	1.7361E-05	4.1217	0.0016867	4.1641	0.0017041	409.23316777322543	21.181	0.17526	21.181	21.052	21.228	0					7	5	2	0	0	0	0.26145	1	2754	2754		2.0598	1.2661	1	9654.3	+		18917	14433	10728	10729	23872	23872					0.033821480428514406
KPAKTQKTSL	10	Unmodified	_KPAKTQKTSL_					0	0	0		nc|ENSG00000143248|O15539-3|RGS5;ENSG00000143248|ENST00000313961|RGS5	nc|ENSG00000143248|O15539-3|RGS5	nc|ENSG00000143248|O15539-3|RGS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.3348388671875	2	551.334956	1100.65536	0.023141	1.2758E-05	-0.21916	-0.00012083	-0.19602	-0.00010807	551.3354344097397	12.569	0.56166	12.569	12.364	12.925	0					72	18	6	0	0	0	8.6705E-14	3	158	158;201;247		193.01	122.68	1	4964000			18918	4493	10729	10730	23873;23874;23875	23873					0.1090567643148006
KPAKTQKTSL	10	Unmodified	_KPAKTQKTSL_					0	0	0		nc|ENSG00000143248|O15539-3|RGS5;ENSG00000143248|ENST00000313961|RGS5	nc|ENSG00000143248|O15539-3|RGS5	nc|ENSG00000143248|O15539-3|RGS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.3352661132812	2	551.334956	1100.65536	0.12513	6.8989E-05	-0.23315	-0.00012855	-0.10802	-5.9556E-05	551.3354346576027	12.575	0.57316	12.478	12.324	12.897	-0.096607					73	19	5	0	0	0	1.1871E-08	3	196	154;196;242		165.58	97.746	1	5500200			18919	4493	10729	10730	23876;23877;23878	23877					0.1090567643148006
KPAKTQKTSL	10	Unmodified	_KPAKTQKTSL_					0	0	0		nc|ENSG00000143248|O15539-3|RGS5;ENSG00000143248|ENST00000313961|RGS5	nc|ENSG00000143248|O15539-3|RGS5	nc|ENSG00000143248|O15539-3|RGS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.3358764648438	2	551.334956	1100.65536	-0.055563	-3.0634E-05	0.018937	1.0441E-05	-0.036626	-2.0193E-05	551.3355468257446	12.602	0.65133	12.535	12.253	12.905	-0.067496					75	21	5	0	0	0	3.2406E-15	3	184	161;184;232		202.97	132.64	1	5626200			18920	4493	10729	10730	23879;23880;23881	23880					0.1090567643148006
KPALFSVL	8	Unmodified	_KPALFSVL_					0	0	0		PBX2|p.R82Q|1|0.2|ENSG00000204304|chr6:32188773-32188773|C/T|missense_variant;ENST00000497091.1_1_9:128509732-128559720:+|nuORF;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;ENSG00000105717|ENST00000251203|PBX4;ENSG00000204304|ENST00000375050|PBX2;ENSG00000167081|ENST00000373489|PBX3	PBX2|p.R82Q|1|0.2|ENSG00000204304|chr6:32188773-32188773|C/T|missense_variant	PBX2|p.R82Q|1|0.2|ENSG00000204304|chr6:32188773-32188773|C/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.7734680175781	2	437.773471	873.53239	-0.15154	-6.6342E-05	0.10555	4.6209E-05	-0.04599	-2.0133E-05	437.7733658581705	61.258	0.48534	61.258	61.052	61.537	0					31	18	2	0	0	0	0.1951	1	15014	15014		43.858	9.7559	1	589660			18921	2015	10730	10731	23882	23882					0.09056464770844741
KPALFSVL	8	Unmodified	_KPALFSVL_					0	0	0		PBX2|p.R82Q|1|0.2|ENSG00000204304|chr6:32188773-32188773|C/T|missense_variant;ENST00000497091.1_1_9:128509732-128559720:+|nuORF;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;ENSG00000105717|ENST00000251203|PBX4;ENSG00000204304|ENST00000375050|PBX2;ENSG00000167081|ENST00000373489|PBX3	PBX2|p.R82Q|1|0.2|ENSG00000204304|chr6:32188773-32188773|C/T|missense_variant	PBX2|p.R82Q|1|0.2|ENSG00000204304|chr6:32188773-32188773|C/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.77313232421875	2	437.773471	873.53239	-0.14665	-6.42E-05	0.051585	2.2583E-05	-0.095067	-4.1618E-05	437.77336349107884	61.16	0.5268	61.257	61.065	61.592	0.096985					31	19	3	0	0	0	0.23736	1	15012	15012		37.974	9.4872	1	689790			18922	2015	10730	10731	23883	23883					0.09056464770844741
KPALLHSTF	9	Unmodified	_KPALLHSTF_					0	0	0		ENSG00000140105|ENST00000392882|WARS1;nc|ENSG00000140105|P23381-2|WARS1;SLC25A29-WARS|2|fusion;SLC25A29-WARS|1|fusion	ENSG00000140105|ENST00000392882|WARS1	ENSG00000140105|ENST00000392882|WARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2435302734375	2	507.292559	1012.57057	-0.11635	-5.9023E-05	1.8637	0.00094543	1.7473	0.0008864	507.2928966949671	34.337	0.4255	34.404	34.239	34.664	0.066704					30	14	3	0	0	0	0.24289	1	6785	6785		13.042	2.8591	1	111220			18923	4284	10731	10732	23884	23884					0.06478350685506484
KPAPSSQRKP	10	Unmodified	_KPAPSSQRKP_					0	0	0		ENSG00000011260|ENST00000225298|UTP18	ENSG00000011260|ENST00000225298|UTP18	ENSG00000011260|ENST00000225298|UTP18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7877197265625	2	548.317097	1094.61964	0.12944	7.0974E-05	0.34181	0.00018742	0.47125	0.00025839	548.3170499431002	15.074	0.38871	15.074	14.9	15.289	0					21	13	2	0	0	0	0.32072	1	911	911		2.9952	0	1	57234			18924	437	10732	10733	23885	23885					0.07611638974481139
KPAQHVQAL	9	Unmodified	_KPAQHVQAL_					0	0	0		ENSG00000129566|ENST00000262715|TEP1;nc|ENSG00000129566|Q99973-2|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF	ENSG00000129566|ENST00000262715|TEP1	ENSG00000129566|ENST00000262715|TEP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2895812988281	2	496.287808	990.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.904	1	16.904	16.404	17.404	0								0	0	0	0.2575	1	1468	1468		3.9444	0.3479	1				18925	3433	10733	10734	23886	23886					0.06540582399975392
KPAQHVQAL	9	Unmodified	_KPAQHVQAL_					0	0	0		ENSG00000129566|ENST00000262715|TEP1;nc|ENSG00000129566|Q99973-2|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF	ENSG00000129566|ENST00000262715|TEP1	ENSG00000129566|ENST00000262715|TEP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2870178222656	2	496.287808	990.561064	0.39338	0.00019523	-1.879	-0.00093253	-1.4856	-0.0007373	496.2872867712133	16.835	0.43781	16.773	16.586	17.024	-0.062534					35	15	3	0	0	0	0.26612	1	1473	1473		13.906	2.2658	1	75706			18926	3433	10733	10734	23887	23887					0.06540582399975392
KPAQHVQAL	9	Unmodified	_KPAQHVQAL_					0	0	0		ENSG00000129566|ENST00000262715|TEP1;nc|ENSG00000129566|Q99973-2|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF	ENSG00000129566|ENST00000262715|TEP1	ENSG00000129566|ENST00000262715|TEP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	496.287808	990.561064	0.20062	9.9564E-05	-1.3291	-0.00065963	-1.1285	-0.00056007	496.28778214863394	16.854	0.46938	16.74	16.586	17.056	-0.11434	-0.016565	0.00042715	NaN	13.906	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79602			18927	3433	10733	10734							0.06540582399975392
KPARSAHV	8	Unmodified	_KPARSAHV_					0	0	0		L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|13|1|sense	L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|13|1|sense	L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|13|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.2536926269531	2	433.253769	864.492984	-0.087586	-3.7947E-05	-0.040552	-1.7569E-05	-0.12814	-5.5516E-05	433.2537692409201	24.184	0.6876	24.145	23.82	24.507	-0.038927					59	23	3	0	0	0	0.3474	1	3674	3674		25.399	6.1423	1	465330			18928	12494	10734	10735	23888	23888					0.05531757539984028
KPARSAHV	8	Unmodified	_KPARSAHV_					0	0	0		L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|13|1|sense	L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|13|1|sense	L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|13|1|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	433.253769	864.492984	-0.2083	-9.0246E-05	-0.022335	-9.6766E-06	-0.23063	-9.9923E-05	433.25374829315535	23.996	0.75536	23.996	23.699	24.454	0	-0.087035	1.0059E-05	NaN	25.399	65	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462420			18929	12494	10734	10735							0.05531757539984028
KPARSAHV	8	Unmodified	_KPARSAHV_					0	0	0		L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|13|1|sense	L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|13|1|sense	L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|13|1|sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	433.253769	864.492984	-0.045518	-1.9721E-05	-0.040331	-1.7474E-05	-0.085849	-3.7194E-05	433.2537399093447	24.18	0.74144	24.107	23.756	24.498	-0.072559	0.024808	-5.5352E-06	NaN	25.399	61	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484890			18930	12494	10734	10735							0.05531757539984028
KPASFMTSI	9	Oxidation (M)	_KPASFM(Oxidation (M))TSI_		KPASFM(1)TSI		KPASFM(120)TSI	0	0	1		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2549743652344	2	499.254785	996.495018	0.4893	0.00024428	0.033265	1.6608E-05	0.52256	0.00026089	499.25468569399453	35.877	0.70726	35.877	35.575	36.282	0					71	25	4	0	0	0	0.0010968	2	7239	7188;7239		121.53	71.601	1	1291400			18931	3570	10735	10736	23889;23890	23890		453			-0.0033699455705118453
KPASFMTSI	9	Oxidation (M)	_KPASFM(Oxidation (M))TSI_		KPASFM(1)TSI		KPASFM(120)TSI	0	0	1		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2548522949219	2	499.254785	996.495018	0.46686	0.00023308	0.14797	7.3874E-05	0.61483	0.00030696	499.25475672885915	35.796	0.76412	35.878	35.598	36.362	0.082355					62	27	3	0	0	0	0.0010968	2	7179	7179;7230		121.53	85.407	1	1457500			18932	3570	10735	10736	23891;23892	23891		453			-0.0033699455705118453
KPASFMTSI	9	Oxidation (M)	_KPASFM(Oxidation (M))TSI_		KPASFM(1)TSI		KPASFM(130)TSI	0	0	1		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2550048828125	2	499.254785	996.495018	0.39939	0.0001994	0.13826	6.9025E-05	0.53765	0.00026842	499.2547703800974	35.737	0.76788	35.823	35.504	36.272	0.08625					67	27	3	0	0	0	0.00019464	3	7185	7140;7185;7230		133.05	74.373	1	1496200			18933	3570	10735	10736	23893;23894;23895	23894		453			-0.0033699455705118453
KPASVFVQL	9	Unmodified	_KPASVFVQL_					0	0	0		nc|ENSG00000109320|P19838-3|NFKB1;nc|ENSG00000109320|P19838|NFKB1;ENSG00000109320|ENST00000226574|NFKB1	nc|ENSG00000109320|P19838-3|NFKB1	nc|ENSG00000109320|P19838-3|NFKB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7949523925781	2	494.794935	987.575317	0.40504	0.00020041	-0.30523	-0.00015103	0.099814	4.9388E-05	494.79479384817523	51.786	0.758	51.786	51.481	52.239	0					76	27	4	0	0	0	0.12765	1	12124	12124		34.222	0.11927	1	2549800			18934	2248	10736	10737	23896	23896					0.08103234828286077
KPASVFVQL	9	Unmodified	_KPASVFVQL_					0	0	0		nc|ENSG00000109320|P19838-3|NFKB1;nc|ENSG00000109320|P19838|NFKB1;ENSG00000109320|ENST00000226574|NFKB1	nc|ENSG00000109320|P19838-3|NFKB1	nc|ENSG00000109320|P19838-3|NFKB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.794921875	2	494.794935	987.575317	0.4285	0.00021202	-0.59033	-0.00029209	-0.16184	-8.0076E-05	494.79476373493463	51.744	0.71859	51.79	51.479	52.198	0.046574					73	25	4	0	0	0	0.053988	2	12124	12071;12124		51.415	15.288	1	2746200			18935	2248	10736	10737	23897;23898	23898					0.08103234828286077
KPASVFVQL	9	Unmodified	_KPASVFVQL_					0	0	0		nc|ENSG00000109320|P19838-3|NFKB1;nc|ENSG00000109320|P19838|NFKB1;ENSG00000109320|ENST00000226574|NFKB1	nc|ENSG00000109320|P19838-3|NFKB1	nc|ENSG00000109320|P19838-3|NFKB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7947998046875	2	494.794935	987.575317	0.2041	0.00010099	-0.33201	-0.00016427	-0.12791	-6.3288E-05	494.79484536174795	51.806	0.72345	51.806	51.551	52.275	0.00039673					77	26	4	0	0	0	0.017549	3	12136	12086;12136;12190		67.838	15.57	1	2794100			18936	2248	10736	10737	23899;23900;23901	23900					0.08103234828286077
KPATKTAEL	9	Unmodified	_KPATKTAEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.78240966796875	2	479.782025	957.549496	-0.11272	-5.4081E-05	0.2646	0.00012695	0.15188	7.287E-05	479.78198976381555	14.946	0.72566	14.946	14.623	15.348	0					68	25	4	0	0	0	0.083138	2	858	858;909		40.725	13.096	1	615740			18937	5388	10737	10738	23902;23903	23902					0.06902340585986622
KPATKTAEL	9	Unmodified	_KPATKTAEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.78277587890625	2	479.782025	957.549496	0.016063	7.7069E-06	0.24016	0.00011523	0.25623	0.00012293	479.7819749122265	15.047	0.83615	14.937	14.51	15.347	-0.10981					75	29	4	0	0	0	0.043711	2	885	885;931		55.235	17.059	1	566170			18938	5388	10737	10738	23904;23905	23904					0.06902340585986622
KPATKTAEL	9	Unmodified	_KPATKTAEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7819519042969	2	479.782025	957.549496	-0.037219	-1.7857E-05	0.16086	7.7177E-05	0.12364	5.932E-05	479.7819371705685	15.071	0.77341	15.007	14.618	15.391	-0.064413					72	26	4	0	0	0	0.13296	2	929	882;929		33.445	8.0169	1	610390			18939	5388	10737	10738	23906;23907	23907					0.06902340585986622
KPATPSVAKQP	11	Unmodified	_KPATPSVAKQP_					0	0	0			REV__ENSG00000180043|ENST00000424985|GARIN5B	REV__ENSG00000180043|ENST00000424985|GARIN5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.326171875	2	562.327131	1122.63971	-0.070825	-3.9827E-05	-1.8102	-0.0010179	-1.881	-0.0010577	562.3260795687381	12.592	0.28364	12.592	12.468	12.751	0					18	9	3	0	0	0	0.47825	1	182	182		0.96228	0	1	65147	+		18940	18100	10738	10739	23908	23908					0.08329389914410967
KPAVDRKQG	9	Unmodified	_KPAVDRKQG_					0	0	0		ENSG00000196872|ENST00000397899|CRACDL	ENSG00000196872|ENST00000397899|CRACDL	ENSG00000196872|ENST00000397899|CRACDL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3056335449219	2	499.790715	997.566878	0.17805	8.8989E-05	0.13856	6.9252E-05	0.31661	0.00015824	499.79061680752244	18.962	0.29738	18.844	18.678	18.975	-0.11739					12	10	2	0	0	0	0.26168	1	2081	2081		1.8442	1.8442	1	18583			18941	7909	10739	10740	23909	23909					0.06799680911660744
KPAWFGLA	8	Unmodified	_KPAWFGLA_					0	0	0			REV__nc|ENSG00000182557|Q6ZMD2-2|SPNS3	REV__nc|ENSG00000182557|Q6ZMD2-2|SPNS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.6358337402344	2	445.250163	888.485774	-0.98834	-0.00044006	-0.61503	-0.00027384	-1.6034	-0.0007139	445.2499279198591	34.526	0.29842	34.601	34.414	34.713	0.075306					17	10	2	0	0	0	0.34218	1	6831	6831		0.6015	0	1	126910	+		18942	18202	10740	10741	23910	23910					0.03707024939558323
KPCGLQRSLPL	11	Unmodified	_KPCGLQRSLPL_					0	0	0		ENST00000605777.1_1_17:41566885-41567849:+|nuORF	ENST00000605777.1_1_17:41566885-41567849:+|nuORF	ENST00000605777.1_1_17:41566885-41567849:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2279052734375	3	404.569147	1210.68561	0.038015	1.538E-05	0.54639	0.00022105	0.58441	0.00023643	404.5692930986881	59.503	0.87006	59.492	58.979	59.85	-0.011486					57	30	3	0	0	0	0.33303	1	14528	14528		2.4348	1.2414	1	179010			18943	12288	10741	10742	23911	23911					0.08869711825013837
KPCPICAGPHW	11	Unmodified	_KPCPICAGPHW_					0	0	0		HERVH-int_dup4392|chr11:117810273-117812670:+|1.0106195284198216|0.4419619859838813|1.19|535.0|47|3|sense;chr2:34696396-34713579|307|49.86|0.04|10.24|+|2|TE_info:HERVH-int,HERVH-int_dup499,ERV1,LTR,donor,+,34694923,34696396|None,LINC01320|14;chr2:34696396-34710452|208|10.32|0.01|10.83|+|2|TE_info:HERVH-int,HERVH-int_dup499,ERV1,LTR,donor,+,34694923,34696396|None,LINC01320|14	HERVH-int_dup4392|chr11:117810273-117812670:+|1.0106195284198216|0.4419619859838813|1.19|535.0|47|3|sense	HERVH-int_dup4392|chr11:117810273-117812670:+|1.0106195284198216|0.4419619859838813|1.19|535.0|47|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.5274353027344	3	403.528295	1207.56305	-0.45736	-0.00018456	-1.887	-0.00076146	-2.3444	-0.00094602	403.52751212550527	12.411	0.72095	12.314	12.206	12.927	-0.096607					35	24	3	0	0	0	0.46277	1	129	129		2.6312	1.4379	1	96058			18944	151	10742	10743	23912	23912					-0.03242448178093582
KPCSLIPR	8	Unmodified	_KPCSLIPR_					0	0	0		ENST00000584580.1_1_17:45912634-45914483:+|nuORF;ENSG00000141294|ENST00000269025|LRRC46	ENST00000584580.1_1_17:45912634-45914483:+|nuORF	ENST00000584580.1_1_17:45912634-45914483:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.27642822265625	2	457.26803	912.521507	-0.83167	-0.0003803	0.40637	0.00018582	-0.4253	-0.00019448	457.26827588730623	35.251	0.81967	35.251	34.672	35.492	0					46	29	2	0	0	0	0.42642	1	7024	7024		13.906	0.86358	1	118610			18945	4364	10743	10744	23913	23913					0.06174739124912776
KPCSLIPR	8	Unmodified	_KPCSLIPR_					0	0	0		ENST00000584580.1_1_17:45912634-45914483:+|nuORF;ENSG00000141294|ENST00000269025|LRRC46	ENST00000584580.1_1_17:45912634-45914483:+|nuORF	ENST00000584580.1_1_17:45912634-45914483:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.27667236328125	2	457.26803	912.521507	-0.77092	-0.00035252	0.55403	0.00025334	-0.21689	-9.9176E-05	457.26823669817344	35.11	0.71571	35.187	34.78	35.495	0.077381					37	25	2	0	0	0	0.42371	1	6968	6968		14.838	3.198	1	146460			18946	4364	10743	10744	23914	23914					0.06174739124912776
KPCWTQKLE	9	Unmodified	_KPCWTQKLE_					0	0	0			REV__ENST00000434344.2_1_20:55033806-55033950:+|nuORF	REV__ENST00000434344.2_1_20:55033806-55033950:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.3296508789062	2	566.794609	1131.57467	0.31585	0.00017902	1.11	0.00062916	1.4259	0.00080818	566.7953205044317	37.362	0.69648	37.455	37.17	37.866	0.093018					71	25	4	0	0	0	0.26068	1	7741	7741		3.2813	0	1	381560	+		18947	20980	10744	10745	23915	23915					0.014140721169042081
KPDQQKLQAL	10	Unmodified	_KPDQQKLQAL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000483706.1_1_3:53276071-53289958:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.8143920898438	2	584.837862	1167.66117	0.23962	0.00014014	-0.42992	-0.00025143	-0.1903	-0.0001113	584.837549158155	25.187	0.55174	25.187	25.011	25.562	0					42	18	3	0	0	0	0.28645	1	3953	3953		27.223	14.983	1	149410			18948	5758	10745	10746	23916	23916					0.08404774943142002
KPDQQKLQAL	10	Unmodified	_KPDQQKLQAL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000483706.1_1_3:53276071-53289958:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.374755859375	2	584.837862	1167.66117	0.043626	2.5514E-05	-0.089258	-5.2201E-05	-0.045632	-2.6687E-05	584.8377330482818	25.263	0.51515	25.207	25.023	25.539	-0.055931					36	17	3	0	0	0	0.27086	1	4017	4017		32.037	12.676	1	165670			18949	5758	10745	10746	23917	23917					0.08404774943142002
KPDQQKLQAL	10	Unmodified	_KPDQQKLQAL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000483706.1_1_3:53276071-53289958:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.3745727539062	2	584.837862	1167.66117	-0.076343	-4.4649E-05	0.053387	3.1223E-05	-0.022956	-1.3426E-05	584.8378862103051	25.322	0.55545	25.291	24.988	25.543	-0.03141					43	19	3	0	0	0	0.27529	1	4026	4026		29.841	4.8496	1	121590			18950	5758	10745	10746	23918	23918					0.08404774943142002
KPDVKERQ	8	Unmodified	_KPDVKERQ_					0	0	0			REV__ENSG00000102218|ENST00000218340|RP2	REV__ENSG00000102218|ENST00000218340|RP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.6715393066406	2	500.282723	998.550893	0.13847	6.9274E-05	-0.26493	-0.00013254	-0.12646	-6.3268E-05	500.28273508796906	15.656	0.59001	15.656	15.445	16.035	0					24	20	2	0	0	0	0.34226	1	1190	1190		10.074	2.7847	1	20747	+		18951	14310	10746	10747	23919	23919					0.051559746747557256
KPEEQRKTL	9	Unmodified	_KPEEQRKTL_					0	0	0		ENSG00000134697|ENST00000373062|GNL2;ENST00000479255.1_1_1:38032458-38033975:-|nuORF	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8226318359375	2	564.822212	1127.62987	-0.074963	-4.2341E-05	1.0152	0.00057342	0.94025	0.00053108	564.8225157512783	12.984	0.18957	12.984	12.9	13.09	0					17	6	3	0	0	0	0.32638	1	299	299		4.897	1.9018	1	79343			18952	3801	10747	10748	23920	23920					0.07116201909047959
KPEEQRQAL	9	Unmodified	_KPEEQRQAL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.79931640625	2	549.798737	1097.58292	0.1016	5.5862E-05	1.5527	0.00085369	1.6543	0.00090956	549.7992881145167	14.886	0.67272	14.886	14.676	15.348	0					68	23	4	0	0	0	0.015924	1	848	848		70.332	22.583	1	490090			18953	12859	10748	10749	23921	23921					0.03803342357900874
KPEEQRQAL	9	Unmodified	_KPEEQRQAL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7991943359375	2	549.798737	1097.58292	0.23587	0.00012968	0.48314	0.00026563	0.71901	0.00039531	549.7990818199696	14.985	0.86275	14.875	14.484	15.347	-0.10982					79	30	4	0	0	0	0.07944	2	884	884;932		41.956	14.327	1	527350			18954	12859	10748	10749	23922;23923	23922					0.03803342357900874
KPEEQRQAL	9	Unmodified	_KPEEQRQAL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.79931640625	2	549.798737	1097.58292	0.13873	7.6276E-05	1.1262	0.00061917	1.2649	0.00069545	549.7991732079548	15.04	0.69399	14.975	14.73	15.424	-0.064413					57	23	4	0	0	0	0.026579	1	898	898		61.602	27.2	1	511990			18955	12859	10748	10749	23924	23924					0.03803342357900874
KPEKKRYFLF	10	Unmodified	_KPEKKRYFLF_					0	0	0		nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.5986633300781	3	452.599324	1354.77614	-0.11013	-4.9843E-05	-1.2092	-0.0005473	-1.3194	-0.00059714	452.598827360366	12.442	0.51998	12.345	12.094	12.614	-0.096607					27	10	4	0	0	0	0.40943	1	140	140		1.7423	0	1	135880			18956	4172	10749	10750	23925	23925					0.1129450414493931
KPENQSLALIK	11	Unmodified	_KPENQSLALIK_					0	0	0			REV__ENSG00000198780|ENST00000687041|FAM169A	REV__ENSG00000198780|ENST00000687041|FAM169A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.24664306640625	3	414.246839	1239.71869	0.12388	5.1318E-05	1.054	0.00043661	1.1779	0.00048793	414.2474664133283	32.125	2.0387	32.125	31.8	33.839	0					172	72	4	0	0	0	0.3429	1	6052	6052		14.838	0	1	2244500	+		18957	18859	10750	10751	23926	23926					0.10841617148707883
KPENQSLALIK	11	Unmodified	_KPENQSLALIK_					0	0	0			REV__ENSG00000198780|ENST00000687041|FAM169A	REV__ENSG00000198780|ENST00000687041|FAM169A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.86669921875	2	620.86662	1239.71869	0.46672	0.00028977	0.2358	0.0001464	0.70252	0.00043617	620.8667927618429	32.122	0.82357	32.122	31.925	32.749	0					60	29	3	0	0	0	0.31831	1	6142	6142		20.581	3.1383	1	520150	+		18958	18859	10750	10751	23927	23927					0.10841617148707883
KPEQETRL	8	Unmodified	_KPEQETRL_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000570986.1_1_17:4457199-4458649:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.671630859375	2	500.774731	999.534909	0.1399	7.0058E-05	-0.014115	-7.0684E-06	0.12578	6.299E-05	500.77434571061815	18.021	0.57488	17.963	17.738	18.312	-0.058636					50	20	3	0	0	0	0.33293	1	1848	1848		20.454	0	1	105650			18959	3627	10751	10752	23928	23928					0.03512268437839339
KPEQGCPVGSD	11	Unmodified	_KPEQGCPVGSD_					0	0	0		ENSG00000111087|ENST00000228682|GLI1;nc|ENSG00000111087|P08151-2|GLI1;nc|ENSG00000111087|P08151-3|GLI1	ENSG00000111087|ENST00000228682|GLI1	ENSG00000111087|ENST00000228682|GLI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.261962890625	2	558.753138	1115.49172	0.22275	0.00012446	-4.4309	-0.0024758	-4.2082	-0.0023513	558.7504539106257	75.966	0.35979	75.935	75.749	76.109	-0.031479					17	12	2	0	0	0	0.32951	1	19529	19529		9.544	3.1899	1	189340			18960	2348	10752	10753	23929	23929					-0.06140289401719201
KPEQGCPVGSD	11	Unmodified	_KPEQGCPVGSD_					0	0	0		ENSG00000111087|ENST00000228682|GLI1;nc|ENSG00000111087|P08151-2|GLI1;nc|ENSG00000111087|P08151-3|GLI1	ENSG00000111087|ENST00000228682|GLI1	ENSG00000111087|ENST00000228682|GLI1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	558.753138	1115.49172	0.02541	1.4198E-05	-3.9335	-0.0021979	-3.9081	-0.0021837	558.7506654240784	75.928	0.402	75.928	75.739	76.141	0	-0.0099809	0.00033984	NaN	9.544	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160940			18961	2348	10752	10753							-0.06140289401719201
KPEQGCPVGSD	11	Unmodified	_KPEQGCPVGSD_					0	0	0		ENSG00000111087|ENST00000228682|GLI1;nc|ENSG00000111087|P08151-2|GLI1;nc|ENSG00000111087|P08151-3|GLI1	ENSG00000111087|ENST00000228682|GLI1	ENSG00000111087|ENST00000228682|GLI1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	558.753138	1115.49172	0.26952	0.00015059	-4.3382	-0.002424	-4.0687	-0.0022734	558.7505867190348	75.897	0.40506	75.95	75.73	76.135	0.053413	0.012693	-0.00011245	NaN	9.544	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152400			18962	2348	10752	10753							-0.06140289401719201
KPEQKQKDK	9	Unmodified	_KPEQKQKDK_					0	0	0			REV__ENSG00000141867|ENST00000679869|BRD4	REV__ENSG00000141867|ENST00000679869|BRD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.8225708007812	2	564.822212	1127.62987	0.047179	2.6648E-05	0.79315	0.00044799	0.84033	0.00047464	564.8224583751464	13.053	0.28318	12.954	12.814	13.097	-0.099291					19	9	3	0	0	0	0.259	1	327	327		5.2969	0	1	70255	+		18963	16094	10753	10754	23930	23930					0.07116201909047959
KPESLQRQLKE	11	Unmodified	_KPESLQRQLKE_					0	0	0			REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.5926513671875	3	452.592898	1354.75686	0.24406	0.00011046	-1.0108	-0.00045747	-0.76671	-0.00034701	452.5923509487427	30.242	0.9047	30.27	29.964	30.869	0.027946					78	31	4	0	0	0	0.35732	2	5544	5544;5564		16.838	0	1	1129900	+		18964	20958	10754	10755	23931;23932	23931					0.09367503063344884
KPEVGRNKKA	10	Unmodified	_KPEVGRNKKA_					0	0	0		ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8154907226562	2	563.838197	1125.66184	0.28334	0.00015976	-1.7358	-0.00097869	-1.4524	-0.00081893	563.837097680066	31.876	0.36938	31.876	31.694	32.064	0					21	12	2	0	0	0	0.31629	1	5977	5977		3.2813	0	1	564280			18965	8252	10755	10756	23933	23933					0.10403614382857995
KPFCAALLKHI	11	Unmodified	_KPFCAALLKHI_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.21441650390625	3	414.246005	1239.71618	0.15292	6.3347E-05	-0.99642	-0.00041276	-0.8435	-0.00034942	414.2455672250283	17.686	0.48099	17.626	17.444	17.925	-0.060429					38	16	3	0	0	0	0.33236	1	1663	1663		4.4062	0.28952	1	82171			18966	6847	10756	10757	23934	23934					0.10591490210072152
KPFDQTTISL	10	Unmodified	_KPFDQTTISL_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3116455078125	2	575.311146	1148.60774	0.4067	0.00023398	0.44379	0.00025532	0.85049	0.0004893	575.3113072110909	53.572	1.2045	53.572	53.201	54.405	0					142	44	5	0	0	0	0.0017096	3	12631	12631;12684;12732		111.31	53.715	1	7830400			18967	2798	10757	10758	23935;23936;23937	23935					0.039379774406370416
KPFDQTTISL	10	Unmodified	_KPFDQTTISL_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	575.311146	1148.60774	0.25971	0.00014941	0.59393	0.00034169	0.85363	0.0004911	575.3113948272583	53.519	1.0992	53.576	53.247	54.346	0.056255	-0.047454	1.4434E-05	NaN	111.31	138	41	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8680500			18968	2798	10757	10758							0.039379774406370416
KPFDQTTISL	10	Unmodified	_KPFDQTTISL_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	575.311146	1148.60774	0.34673	0.00019948	0.68324	0.00039307	1.03	0.00059255	575.3114281992944	53.731	1.129	53.722	53.329	54.458	-0.0096054	0.098495	0.0001172	NaN	111.31	140	41	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8758100			18969	2798	10757	10758							0.039379774406370416
KPFEQRWT	8	Unmodified	_KPFEQRWT_					0	0	0			REV__ENSG00000183476|ENST00000328828|SH2D7	REV__ENSG00000183476|ENST00000328828|SH2D7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8308715820312	2	546.285266	1090.55598	0.42785	0.00023373	0.36924	0.00020171	0.79708	0.00043544	546.2853247261311	29.019	0.48182	29.033	28.818	29.3	0.013475					38	17	3	0	0	0	0.34167	1	5121	5121		11.64	2.2572	1	182040	+		18970	18265	10758	10759	23938	23938					0.0143227853739063
KPFEQVKGITL	11	Unmodified	_KPFEQVKGITL_					0	0	0		nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF	nc|ENSG00000151726|P33121-2|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.5830383300781	3	420.583451	1258.72852	0.25112	0.00010562	-0.45424	-0.00019105	-0.20312	-8.5428E-05	420.58314376022264	46.9	0.82228	46.9	46.618	47.44	0					75	28	4	0	0	0	0.0087711	2	10623	10574;10623		72.272	47.391	1	3382800			18971	4980	10759	10760	23939;23940	23940					0.10950805154084264
KPFEQVKGITL	11	Unmodified	_KPFEQVKGITL_					0	0	0		nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF	nc|ENSG00000151726|P33121-2|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.371826171875	2	630.371538	1258.72852	0.65712	0.00041423	-0.034392	-2.168E-05	0.62273	0.00039255	630.3715449567914	46.889	0.59875	46.889	46.703	47.302	0					46	20	3	0	0	0	1.374E-12	2	10599	10599;10657		200.78	146.95	1	1478900			18972	4980	10759	10760	23941;23942	23941					0.10950805154084264
KPFEQVKGITL	11	Unmodified	_KPFEQVKGITL_					0	0	0		nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF	nc|ENSG00000151726|P33121-2|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.5832214355469	3	420.583451	1258.72852	0.15678	6.5941E-05	-0.3385	-0.00014237	-0.18171	-7.6426E-05	420.58318842804914	46.827	0.8555	46.879	46.578	47.433	0.052574					95	31	4	0	0	0	0.087272	2	10549	10549;10596		42.466	30.834	1	3270700			18973	4980	10759	10760	23943;23944	23943					0.10950805154084264
KPFEQVKGITL	11	Unmodified	_KPFEQVKGITL_					0	0	0		nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF	nc|ENSG00000151726|P33121-2|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.3722534179688	2	630.371538	1258.72852	0.33399	0.00021054	0.60114	0.00037894	0.93514	0.00058948	630.3719117119789	46.84	0.80276	46.893	46.603	47.405	0.052574					61	29	3	0	0	0	1.4557E-08	2	10557	10557;10609		161.44	121.5	1	1100900			18974	4980	10759	10760	23945;23946	23945					0.10950805154084264
KPFEQVKGITL	11	Unmodified	_KPFEQVKGITL_					0	0	0		nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF	nc|ENSG00000151726|P33121-2|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.3721313476562	2	630.371538	1258.72852	0.67592	0.00042608	0.25749	0.00016231	0.93341	0.0005884	630.3716695242698	46.833	0.65243	46.888	46.657	47.309	0.054375					54	22	3	0	0	0	1.3884E-08	2	10614	10561;10614		160.97	115.23	1	1220600			18975	4980	10759	10760	23947;23948	23948					0.10950805154084264
KPFEQVKGITL	11	Unmodified	_KPFEQVKGITL_					0	0	0		nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF	nc|ENSG00000151726|P33121-2|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	420.583451	1258.72852	0.40943	0.0001722	-0.67147	-0.00028241	-0.26204	-0.00011021	420.5830805797227	46.887	0.91721	46.941	46.574	47.491	0.054371	0.034632	-0.00020771	NaN	72.272	85	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3309000			18976	4980	10759	10760							0.10950805154084264
KPFFTLAAPH	10	Unmodified	_KPFFTLAAPH_					0	0	0			REV__ENST00000328194.7_2_11:9161143-9161221:-|nuORF	REV__ENST00000328194.7_2_11:9161143-9161221:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.8225708007812	2	564.813659	1127.61277	0.052957	2.9911E-05	-2.2451	-0.0012681	-2.1922	-0.0012382	564.8121382100305	12.98	0.25381	12.881	12.757	13.011	-0.099291					10	8	2	0	0	0	0.38515	1	327	327		6.2058	0.47393	1	41943	+		18977	20012	10760	10761	23949	23949					0.054063260938846724
KPFLGIGL	8	Unmodified	_KPFLGIGL_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;KPNB1|p.A876Cfs*2|1|0.05|ENSG00000108424|chr17:47680663-47680664|-/GTGCT|frameshift_variant;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.76806640625	2	422.768189	843.521825	0.0090824	3.8397E-06	0.13179	5.5715E-05	0.14087	5.9555E-05	422.7681181824824	62.333	0.90825	62.333	62.022	62.93	0					85	33	4	0	0	0	0.033363	3	15337	15337;15389;15494		86.121	19.086	1	1721600			18978	2185	10761	10762	23950;23951;23952	23950					0.09380482116409894
KPFLGIGL	8	Unmodified	_KPFLGIGL_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;KPNB1|p.A876Cfs*2|1|0.05|ENSG00000108424|chr17:47680663-47680664|-/GTGCT|frameshift_variant;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.7681579589844	2	422.768189	843.521825	-0.042595	-1.8008E-05	0.14636	6.1875E-05	0.10376	4.3867E-05	422.76813330533497	62.245	0.90236	62.342	62.004	62.906	0.096985					72	32	3	0	0	0	0.033363	3	15310	15310;15356;15408		86.121	19.086	1	1857300			18979	2185	10761	10762	23953;23954;23955	23953					0.09380482116409894
KPFLGIGL	8	Unmodified	_KPFLGIGL_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;KPNB1|p.A876Cfs*2|1|0.05|ENSG00000108424|chr17:47680663-47680664|-/GTGCT|frameshift_variant;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.7681884765625	2	422.768189	843.521825	0.066715	2.8205E-05	0.069434	2.9355E-05	0.13615	5.7559E-05	422.7681156002899	62.333	0.9577	62.324	61.955	62.913	-0.0085526					80	35	3	0	0	0	0.033363	2	15367	15322;15367		86.121	19.086	1	1790900			18980	2185	10761	10762	23956;23957	23957					0.09380482116409894
KPFQKSKFLQL	11	Unmodified	_KPFQKSKFLQL_					0	0	0		ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	ENSG00000196664|ENST00000380659|TLR7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2432861328125	3	455.274729	1362.80236	0.13247	6.0309E-05	-0.36931	-0.00016814	-0.23684	-0.00010783	455.2744597662007	39.575	0.61354	39.674	39.396	40.01	0.099403					34	21	2	0	0	0	0.33236	1	8315	8315		4.4062	2.3222	1	308780			18981	7893	10762	10763	23958	23958					0.1354677331644325
KPFRVKYLPA	10	Unmodified	_KPFRVKYLPA_					0	0	0			REV__nc|ENSG00000177034|Q5HYI7-4|MTX3	REV__nc|ENSG00000177034|Q5HYI7-4|MTX3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.91790771484375	3	406.916764	1217.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.06	1	103.06	102.56	103.56	0								0	0	0	0.38126	1	27390	27390		0.69767	0	1		+		18982	17968	10763	10764	23959	23959					0.1283084994474848
KPGAEARSL	9	Unmodified	_KPGAEARSL_					0	0	0		ENST00000531840.1_1_11:2417722-2418004:+|nuORF;ENST00000481386.1_1_11:2417722-2418093:+|nuORF	ENST00000531840.1_1_11:2417722-2418004:+|nuORF	ENST00000531840.1_1_11:2417722-2418004:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.76373291015625	2	464.764166	927.513779	-0.10842	-5.039E-05	1.1963	0.00055598	1.0878	0.00050559	464.7636079437033	34.24	0.74986	34.307	33.995	34.744	0.0667					53	26	3	0	0	0	0.20626	1	6755	6755		22.736	2.2827	1	287410			18983	11028	10764	10765	23960	23960					0.047123031289856954
KPGAPLPAL	9	Unmodified	_KPGAPLPAL_					0	0	0		nc|ENSG00000196711|Q6UXT8-2|ALKAL1;ENSG00000196711|ENST00000358543|ALKAL1	nc|ENSG00000196711|Q6UXT8-2|ALKAL1	nc|ENSG00000196711|Q6UXT8-2|ALKAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.2303771972656	2	432.271096	862.527639	0.057759	2.4967E-05	0.046603	2.0145E-05	0.10436	4.5112E-05	432.2711127959265	64.64	0.47497	64.64	64.513	64.988	0					19	17	2	0	0	0	0.24913	1	16044	16044		12.532	3.1841	1	82991			18984	7898	10765	10766	23961	23961					0.09087580628079195
KPGASPVSR	9	Unmodified	_KPGASPVSR_					0	0	0		ENST00000415298.5_1_2:224642518-224702333:-|nuORF	ENST00000415298.5_1_2:224642518-224702333:-|nuORF	ENST00000415298.5_1_2:224642518-224702333:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.598876953125	2	449.758884	897.503215	-0.039539	-1.7783E-05	-0.58783	-0.00026438	-0.62736	-0.00028216	449.7586607445836	15.272	0.42537	15.162	14.982	15.408	-0.10981					20	14	2	0	0	0	0.26099	1	944	944		2.9952	0.69251	1	37212			18985	10308	10766	10767	23962	23962					0.05036320474573586
KPGDKVITLF	10	Unmodified	_KPGDKVITLF_					0	0	0		nc|ENSG00000172955|P28332|ADH6;ENSG00000172955|ENST00000394899|ADH6	nc|ENSG00000172955|P28332|ADH6	nc|ENSG00000172955|P28332|ADH6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.3324584960938	2	559.334424	1116.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.964	1	87.964	87.464	88.464	0								0	0	0	0.37044	1	23216	23216		6.2058	2.6093	1				18986	6680	10767	10768	23963	23963					0.10063462062544204
KPGGLRIRED	10	Unmodified	_KPGGLRIRED_					0	0	0		nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8150634765625	2	570.827829	1139.64111	0.50877	0.00029042	-0.79561	-0.00045416	-0.28684	-0.00016374	570.8274926623764	21.453	0.58535	21.352	21.13	21.716	-0.10034					32	20	3	0	0	0	0.31876	1	2876	2876		7.1017	0	1	82227			18987	12950	10768	10769	23964	23964					0.07687024003166698
KPGGLRIRED	10	Unmodified	_KPGGLRIRED_					0	0	0		nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.815185546875	2	570.827829	1139.64111	0.28037	0.00016004	-0.32318	-0.00018448	-0.04281	-2.4437E-05	570.8276110881266	21.439	0.53785	21.389	21.179	21.717	-0.049377					33	18	2	0	0	0	0.31876	1	2865	2865		7.1017	0	1	72776			18988	12950	10768	10769	23965	23965					0.07687024003166698
KPGIKLTL	8	Unmodified	_KPGIKLTL_					0	0	0		ENST00000489906.5_1_5:133308464-133311792:-|nuORF;ENSG00000213585|ENST00000265333|VDAC1	ENST00000489906.5_1_5:133308464-133311792:-|nuORF	ENST00000489906.5_1_5:133308464-133311792:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.5761413574219	2	435.294571	868.574589	0.061013	2.6559E-05	-0.54113	-0.00023555	-0.48011	-0.00020899	435.29423019354084	37.835	0.5156	37.926	37.693	38.209	0.090881					32	18	2	0	0	0	0.30241	1	7865	7865		19.257	4.4187	1	192500			18989	8352	10769	10770	23966	23966					0.13504440179224275
KPGKDIRNHI	10	Unmodified	_KPGKDIRNHI_					0	0	0		ENSG00000188295|ENST00000448299|ZNF669;nc|ENSG00000188295|Q96BR6|ZNF669	ENSG00000188295|ENST00000448299|ZNF669	ENSG00000188295|ENST00000448299|ZNF669	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3438110351562	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.56	1	119.56	119.06	120.06	0								0	0	0	0.38126	1	30843	30843		1.6526	0	1				18990	7741	10770	10771	23967	23967					0.09147016757128767
KPGKDIRNHI	10	Unmodified	_KPGKDIRNHI_					0	0	0		ENSG00000188295|ENST00000448299|ZNF669;nc|ENSG00000188295|Q96BR6|ZNF669	ENSG00000188295|ENST00000448299|ZNF669	ENSG00000188295|ENST00000448299|ZNF669	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3431396484375	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.5	1	113.48	112.98	113.98	-0.017303								0	0	0	0.38202	1	29501	29501		0.40072	0	1				18991	7741	10770	10771	23968	23968					0.09147016757128767
KPGKDIRNHI	10	Unmodified	_KPGKDIRNHI_					0	0	0		ENSG00000188295|ENST00000448299|ZNF669;nc|ENSG00000188295|Q96BR6|ZNF669	ENSG00000188295|ENST00000448299|ZNF669	ENSG00000188295|ENST00000448299|ZNF669	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3421630859375	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.4	1	118.43	117.93	118.93	0.026253								0	0	0	0.38202	1	30662	30662		0.40072	0	1				18992	7741	10770	10771	23969	23969					0.09147016757128767
KPGKNKRGGGI	11	Unmodified	_KPGKNKRGGGI_					0	0	0		ENST00000360264.7_1_7:101892895-101892985:+|nuORF	ENST00000360264.7_1_7:101892895-101892985:+|nuORF	ENST00000360264.7_1_7:101892895-101892985:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3380737304688	2	556.338364	1110.66217	-0.040711	-2.2649E-05	-0.59454	-0.00033077	-0.63525	-0.00035342	556.3380123359082	12.509	0.27172	12.509	12.397	12.669	0					19	8	3	0	0	0	0.44523	1	152	152		5.2969	0.54088	1	105030			18993	9674	10771	10772	23970	23970					0.11127034102696598
KPGKVPKLL	9	Unmodified	_KPGKVPKLL_					0	0	0		ENST00000453184.2_1_2:90007722-90008108:+|nuORF;nc|ENSG00000250036|P0DSN7|IGKV1D-37;nc|ENSG00000244575|A0A075B6S5|IGKV1-27	ENST00000453184.2_1_2:90007722-90008108:+|nuORF	ENST00000453184.2_1_2:90007722-90008108:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2569274902344	2	490.33677	978.658987	0.25668	0.00012586	-0.43905	-0.00021528	-0.18237	-8.9422E-05	490.33661730397273	94.285	0.12092	94.367	94.269	94.389	0.082779					14	10	2	0	0	0	0.25622	1	25123	25123		7.2892	2.96	1	56439			18994	10666	10772	10773	23971	23971					0.16880390995981998
KPGKVVLVL	9	Unmodified	_KPGKVVLVL_					0	0	0		ENSG00000131469|ENST00000253788|RPL27;ENST00000587478.1_1_17:41150475-41150953:+|nuORF;ENST00000593262.1_1_17:41150683-41150953:+|nuORF	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.2848205566406	2	476.83132	951.648088	-0.23507	-0.00011209	0.36738	0.00017518	0.1323	6.3085E-05	476.83147725683	38.972	0.36126	38.972	38.679	39.04	0					17	12	2	0	0	0	0.25202	1	8118	8118		6.7232	0.96273	1	113000			18995	3568	10773	10774	23972	23972					0.17032988621690492
KPGKVVLVL	9	Unmodified	_KPGKVVLVL_					0	0	0		ENSG00000131469|ENST00000253788|RPL27;ENST00000587478.1_1_17:41150475-41150953:+|nuORF;ENST00000593262.1_1_17:41150683-41150953:+|nuORF	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.28485107421875	2	476.83132	951.648088	0.19656	9.3728E-05	0.11994	5.719E-05	0.3165	0.00015092	476.83137872027675	38.839	0.2661	38.932	38.786	39.052	0.09267					14	9	2	0	0	0	0.25202	1	8104	8104		10.824	6.0679	1	105700			18996	3568	10773	10774	23973	23973					0.17032988621690492
KPGKVVLVL	9	Unmodified	_KPGKVVLVL_					0	0	0		ENSG00000131469|ENST00000253788|RPL27;ENST00000587478.1_1_17:41150475-41150953:+|nuORF;ENST00000593262.1_1_17:41150683-41150953:+|nuORF	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.2848205566406	2	476.83132	951.648088	0.43016	0.00020511	-0.54871	-0.00026164	-0.11855	-5.6527E-05	476.8309564034046	38.815	0.30934	38.914	38.707	39.017	0.099407					16	10	2	0	0	0	0.25202	1	8080	8080		10.824	6.4947	1	123760			18997	3568	10773	10774	23974	23974					0.17032988621690492
KPGLKVLSI	9	Unmodified	_KPGLKVLSI_					0	0	0		ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.8030090332031	2	477.820953	953.627353	-0.015169	-7.2482E-06	0.26172	0.00012505	0.24655	0.00011781	477.8209860511049	42.154	0.48241	42.154	41.9	42.383	0					27	16	2	0	0	0	0.067763	1	9130	9130		67.838	31.711	1	625190			18998	6453	10774	10775	23975	23975					0.14868398242049352
KPGLKVLSI	9	Unmodified	_KPGLKVLSI_					0	0	0		ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.8030700683594	2	477.820953	953.627353	0.37341	0.00017842	0.0026132	1.2486E-06	0.37602	0.00017967	477.82084979559	41.907	0.55846	41.998	41.853	42.412	0.090252					34	19	2	0	0	0	0.018737	1	9126	9126		51.415	18.63	1	574500			18999	6453	10774	10775	23976	23976					0.14868398242049352
KPGLKVLSI	9	Unmodified	_KPGLKVLSI_					0	0	0		ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.802978515625	2	477.820953	953.627353	0.46736	0.00022331	-0.095502	-4.5633E-05	0.37186	0.00017768	477.8207315962373	41.886	0.60351	41.983	41.814	42.418	0.096622					32	20	3	0	0	0	0.052436	1	9078	9078		74.2	32.36	1	572740			19000	6453	10774	10775	23977	23977					0.14868398242049352
KPGLPRLQL	9	Unmodified	_KPGLPRLQL_					0	0	0			REV__ENST00000308893.8_1_16:29985383-29985953:+|nuORF	REV__ENST00000308893.8_1_16:29985383-29985953:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.3293151855469	2	511.329476	1020.6444	0.0034091	1.7432E-06	0.056282	2.8778E-05	0.059691	3.0522E-05	511.3294531890867	29.75	0.43746	29.763	29.536	29.974	0.013475					31	14	3	0	0	0	0.31038	1	5395	5395		7.2892	1.5574	1	172700	+		19001	19884	10775	10776	23978	23978					0.13490318847846083
KPGMNLLHFV	10	Unmodified	_KPGMNLLHFV_					0	0	0		ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.321044921875	2	578.320794	1154.62703	0.38905	0.00022499	0.25585	0.00014796	0.6449	0.00037296	578.320734328455	82.219	2.6522	82.219	81.302	83.954	0					240	103	3	0	0	0	0.40106	1	21786	21786		3.2813	0	1	835630			19002	4047	10776	10777	23979	23979					0.055906552505121
KPGPLATEL	9	Unmodified	_KPGPLATEL_					0	0	0			REV__ENST00000494295.1_1_X:134477728-134477890:-|nuORF	REV__ENST00000494295.1_1_X:134477728-134477890:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2835388183594	2	463.271293	924.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.457	1	89.548	89.048	90.048	0.090569								0	0	0	0.25631	1	23667	23667		4.3292	1.7518	1		+		19003	21648	10777	10778	23980	23980					0.06274955557273643
KPGPLATEL	9	Unmodified	_KPGPLATEL_					0	0	0			REV__ENST00000494295.1_1_X:134477728-134477890:-|nuORF	REV__ENST00000494295.1_1_X:134477728-134477890:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.283447265625	2	463.271293	924.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.222	1	89.222	88.722	89.722	-0.00080872								0	0	0	0.25631	1	23588	23588		4.3292	1.44	1		+		19004	21648	10777	10778	23981	23981					0.06274955557273643
KPGQQKRRQR	10	Unmodified	_KPGQQKRRQR_					0	0	0			REV__ENSG00000129347|ENST00000312962|KRI1	REV__ENSG00000129347|ENST00000312962|KRI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8818359375	2	641.384168	1280.75378	0.27296	0.00017507	-0.3106	-0.00019921	-0.037638	-2.4141E-05	641.3849818814257	93.344	1.7735	93.344	92.641	94.415	0					355	148	3	0	0	0	0.40106	8	25128	24656;24710;24747;24790;24798;24965;25052;25128		3.2813	1.7994	1	570220	+		19005	15412	10778	10779	23982;23983;23984;23985;23986;23987;23988;23989	23989					0.12463717519858619
KPGQQKRRQR	10	Unmodified	_KPGQQKRRQR_					0	0	0			REV__ENSG00000129347|ENST00000312962|KRI1	REV__ENSG00000129347|ENST00000312962|KRI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.3851928710938	2	641.384168	1280.75378	0.43559	0.00027938	-0.26749	-0.00017156	0.1681	0.00010782	641.3849270103111	93.215	0.88622	93.301	92.91	93.796	0.086678					218	77	4	0	0	0	0.36786	8	24811	24733;24756;24811;24850;24903;24938;24940;24953		9.3831	1.2276	1	610510	+		19006	15412	10778	10779	23990;23991;23992;23993;23994;23995;23996;23997	23992					0.12463717519858619
KPGQQKRRQR	10	Unmodified	_KPGQQKRRQR_					0	0	0			REV__ENSG00000129347|ENST00000312962|KRI1	REV__ENSG00000129347|ENST00000312962|KRI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.9254150390625	3	427.925204	1280.75378	0.087739	3.7546E-05	1.7399	0.00074456	1.8277	0.00078211	427.9254452516863	93.284	2.0387	93.283	91.814	93.853	-0.00051117					281	158	3	0	0	0	0.38773	3	24842	24803;24842;24885		3.0723	1.8574	1	774860	+		19007	15412	10778	10779	23998;23999;24000	23999					0.12463717519858619
KPGQQKRRQR	10	Unmodified	_KPGQQKRRQR_					0	0	0			REV__ENSG00000129347|ENST00000312962|KRI1	REV__ENSG00000129347|ENST00000312962|KRI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8822631835938	2	641.384168	1280.75378	0.61802	0.00039639	-1.029	-0.00065996	-0.41094	-0.00026357	641.384807268107	93.247	1.8269	93.247	92.734	94.561	-0.00051117					305	153	3	0	0	0	0.38773	7	25024	24956;24966;25024;25096;25135;25164;25192		5.7319	1.6287	1	573760	+		19008	15412	10778	10779	24001;24002;24003;24004;24005;24006;24007	24003					0.12463717519858619
KPGQQKRRQR	10	Unmodified	_KPGQQKRRQR_					0	0	0			REV__ENSG00000129347|ENST00000312962|KRI1	REV__ENSG00000129347|ENST00000312962|KRI1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	427.925204	1280.75378	-0.17703	-7.5754E-05	0.90535	0.00038742	0.72832	0.00031167	427.92559064125396	93.354	1.1005	93.354	93.001	94.102	0	0.033934	-3.9169E-05	NaN	3.0723	271	91	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	955530	+		19009	15412	10778	10779							0.12463717519858619
KPGQQKRRQR	10	Unmodified	_KPGQQKRRQR_					0	0	0			REV__ENSG00000129347|ENST00000312962|KRI1	REV__ENSG00000129347|ENST00000312962|KRI1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	427.925204	1280.75378	-0.11389	-4.8735E-05	0.99014	0.00042371	0.87626	0.00037497	427.92552750105114	93.236	1.0411	93.323	92.995	94.036	0.08667	0.0028226	6.9689E-05	NaN	3.0723	253	89	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	858910	+		19010	15412	10778	10779							0.12463717519858619
KPGQQKRRQR	10	Unmodified	_KPGQQKRRQR_					0	0	0			REV__ENSG00000129347|ENST00000312962|KRI1	REV__ENSG00000129347|ENST00000312962|KRI1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	427.925204	1280.75378	0.087739	3.7546E-05	1.7399	0.00074456	1.8277	0.00078211	427.9254452516863	93.284	2.0387	93.283	91.814	93.853	-0.00051117	-0.036756	0.0010323	NaN	3.0723	281	158	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	774860	+		19011	15412	10778	10779							0.12463717519858619
KPGRKGISL	9	Unmodified	_KPGRKGISL_					0	0	0		ENST00000502453.1_1_5:32599051-32601187:+|nuORF;ENSG00000113387|ENST00000265073|SUB1	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.30596923828125	2	478.306001	954.597449	0.087467	4.1836E-05	-0.17697	-8.4645E-05	-0.089502	-4.2809E-05	478.305906463795	16.646	0.83699	16.646	16.405	17.242	0					90	28	5	0	0	0	0.0046246	2	1409	1360;1409		89.401	37.132	1	1888100			19012	2500	10779	10780	24008;24009	24009					0.11833459296701676
KPGRKGISL	9	Unmodified	_KPGRKGISL_					0	0	0		ENST00000502453.1_1_5:32599051-32601187:+|nuORF;ENSG00000113387|ENST00000265073|SUB1	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.30609130859375	2	478.306001	954.597449	0.047766	2.2847E-05	-0.09196	-4.3985E-05	-0.044193	-2.1138E-05	478.30594471913525	16.747	0.93117	16.633	16.395	17.326	-0.11434					95	33	4	0	0	0	0.018449	4	1429	1386;1429;1472;1513		66.457	24.003	1	1838100			19013	2500	10779	10780	24010;24011;24012;24013	24011					0.11833459296701676
KPGRKGISL	9	Unmodified	_KPGRKGISL_					0	0	0		ENST00000502453.1_1_5:32599051-32601187:+|nuORF;ENSG00000113387|ENST00000265073|SUB1	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.3060607910156	2	478.306001	954.597449	0.26456	0.00012654	-0.25561	-0.00012226	0.0089452	4.2785E-06	478.30586723085213	16.697	0.97679	16.634	16.351	17.327	-0.062534					100	34	5	0	0	0	0.014206	3	1414	1369;1414;1463		72.968	24.622	1	1824600			19014	2500	10779	10780	24014;24015;24016	24015					0.11833459296701676
KPGRRRALEAL	11	Unmodified	_KPGRRRALEAL_					0	0	0		nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.5747375488281	3	422.929955	1265.76804	-0.24135	-0.00010207	-0.17044	-7.2085E-05	-0.41179	-0.00017416	422.9298335103436	19.216	0.81448	19.216	19.034	19.849	0					63	28	3	0	0	0	0.32774	1	2172	2172		13.519	6.0416	1	100790			19015	5879	10780	10781	24017	24017					0.14578369948162617
KPGRRRALEAL	11	Unmodified	_KPGRRRALEAL_					0	0	0		nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5746765136719	3	422.929955	1265.76804	0.037767	1.5973E-05	-0.35923	-0.00015193	-0.32146	-0.00013595	422.92978654351003	19.511	0.80556	19.455	19.172	19.978	-0.055693					65	28	3	0	0	0	0.32951	1	2240	2240		10.315	4.1234	1	94446			19016	5879	10780	10781	24018	24018					0.14578369948162617
KPGYRRGY	8	Unmodified	_KPGYRRGY_					0	0	0			REV__ENSG00000129170|ENST00000265968|CSRP3	REV__ENSG00000129170|ENST00000265968|CSRP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.309814453125	2	498.772326	995.530098	0.33065	0.00016492	-3.0399	-0.0015162	-2.7093	-0.0013513	498.77043753176076	93.272	0.052475	93.359	93.342	93.394	0.08667					5	4	2	0	0	0	0.34337	1	24840	24840		5.2307	1.2863	1	29574	+		19017	15401	10781	10782	24019	24019					0.03215429085753385
KPHAPIISI	9	Unmodified	_KPHAPIISI_					0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.28704833984375	2	488.302927	974.591301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.179	1	39.179	38.679	39.679	0								0	0	0	0.18639	1	8241	8241		26.268	0.86883	1				19018	4099	10782	10783	24020	24020					0.10298941065184408
KPHAPIISI	9	Unmodified	_KPHAPIISI_					0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2868957519531	2	488.302927	974.591301	0.45955	0.0002244	-0.028156	-1.3749E-05	0.43139	0.00021065	488.3028763322533	39.003	0.16716	39.103	39.017	39.184	0.099407					8	5	2	0	0	0	0.17277	1	8192	8192		27.629	3.6082	1	332820			19019	4099	10782	10783	24021	24021					0.10298941065184408
KPHAPIISI	9	Unmodified	_KPHAPIISI_					0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	488.302927	974.591301	0.14608	7.133E-05	0.25415	0.0001241	0.40023	0.00019543	488.30303983184797	39.083	0.14952	39.175	39.052	39.201	0.09267	0.036238	0.00014813	NaN	27.629	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323840			19020	4099	10782	10783							0.10298941065184408
KPHEGRYIL	9	Unmodified	_KPHEGRYIL_					0	0	0		ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8138427734375	2	556.81419	1111.61383	0.19199	0.0001069	0.10951	6.0977E-05	0.3015	0.00016788	556.8141461864882	22.513	0.51829	22.425	22.166	22.685	-0.087608					29	18	3	0	0	0	0.27726	1	3184	3184		12.241	2.8575	1	62715			19021	5065	10783	10784	24022	24022					0.06248540462820529
KPHEGRYIL	9	Unmodified	_KPHEGRYIL_					0	0	0		ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.8143920898438	2	556.81419	1111.61383	0.047308	2.6342E-05	0.13423	7.4742E-05	0.18154	0.00010108	556.8140774615448	22.456	0.52644	22.411	22.209	22.735	-0.044867					31	17	2	0	0	0	0.28225	1	3179	3179		11.495	2.1116	1	61540			19022	5065	10783	10784	24023	24023					0.06248540462820529
KPHEGRYIL	9	Unmodified	_KPHEGRYIL_					0	0	0		ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	556.81419	1111.61383	0.15965	8.8897E-05	-0.22715	-0.00012648	-0.067494	-3.7582E-05	556.8140168397335	22.35	0.48591	22.35	22.189	22.675	0	-0.045472	-0.00013971	NaN	12.241	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66732			19023	5065	10783	10784							0.06248540462820529
KPHERDLTML	10	Unmodified	_KPHERDLTML_					0	0	0			REV__ENST00000502584.5_1_4:77952330-77952654:+|nuORF	REV__ENST00000502584.5_1_4:77952330-77952654:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3275756835938	2	620.329347	1238.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.771	1	94.771	94.271	95.271	0								0	0	0	0.38126	1	25286	25286		1.6526	0	1		+		19024	21718	10784	10785	24024	24024					0.03436531065676718
KPHERKQNL	9	Unmodified	_KPHERKQNL_					0	0	0		ENST00000478695.1_1_2:15763675-15767284:+|nuORF;ENST00000470674.1_1_2:15763561-15768670:+|nuORF;nc|ENSG00000079785|Q92499-3|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENSG00000079785|ENST00000233084|DDX1	ENST00000478695.1_1_2:15763675-15767284:+|nuORF	ENST00000478695.1_1_2:15763675-15767284:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3280029296875	2	575.327996	1148.64144	-0.13171	-7.5779E-05	-0.11071	-6.3692E-05	-0.24242	-0.00013947	575.3280124985024	12.204	0.2452	12.204	12.087	12.332	0					22	10	4	0	0	0	0.29638	1	67	67		9.3831	3.1773	1	148830			19025	1140	10785	10786	24025	24025					0.07306443723041411
KPHERKQNL	9	Unmodified	_KPHERKQNL_					0	0	0		ENST00000478695.1_1_2:15763675-15767284:+|nuORF;ENST00000470674.1_1_2:15763561-15768670:+|nuORF;nc|ENSG00000079785|Q92499-3|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENSG00000079785|ENST00000233084|DDX1	ENST00000478695.1_1_2:15763675-15767284:+|nuORF	ENST00000478695.1_1_2:15763675-15767284:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3281860351562	2	575.327996	1148.64144	0.075853	4.3641E-05	0.24933	0.00014344	0.32518	0.00018708	575.3278817204944	12.204	0.25012	12.107	12.018	12.268	-0.096607					22	9	3	0	0	0	0.28225	1	70	70		11.495	2.7493	1	140560			19026	1140	10785	10786	24026	24026					0.07306443723041411
KPHERKQNL	9	Unmodified	_KPHERKQNL_					0	0	0		ENST00000478695.1_1_2:15763675-15767284:+|nuORF;ENST00000470674.1_1_2:15763561-15768670:+|nuORF;nc|ENSG00000079785|Q92499-3|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENSG00000079785|ENST00000233084|DDX1	ENST00000478695.1_1_2:15763675-15767284:+|nuORF	ENST00000478695.1_1_2:15763675-15767284:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3280029296875	2	575.327996	1148.64144	-0.20291	-0.00011674	0.19005	0.00010934	-0.012855	-7.396E-06	575.3280212095367	12.22	0.35426	12.152	12.051	12.405	-0.06806					22	13	2	0	0	0	0.30459	1	72	72		8.1555	4.2111	1	154920			19027	1140	10785	10786	24027	24027					0.07306443723041411
KPHIRPVL	8	Unmodified	_KPHIRPVL_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0-2|ABI3BP;ENST00000470336.5_1_3:100469341-100565327:-|nuORF;nc|ENSG00000154175|Q7Z7G0-3|ABI3BP;nc|ENSG00000154175|Q7Z7G0-4|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2671813964844	2	480.311087	958.60762	0.029777	1.4302E-05	-0.076122	-3.6562E-05	-0.046345	-2.226E-05	480.3109788183376	23.723	0.52469	23.723	23.419	23.943	0					27	17	2	0	0	0	0.34131	1	3517	3517		12.532	3.9383	1	62385			19028	5110	10786	10787	24028	24028					0.1266606702192803
KPHIRPVL	8	Unmodified	_KPHIRPVL_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0-2|ABI3BP;ENST00000470336.5_1_3:100469341-100565327:-|nuORF;nc|ENSG00000154175|Q7Z7G0-3|ABI3BP;nc|ENSG00000154175|Q7Z7G0-4|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2670593261719	2	480.311087	958.60762	0.16628	7.9865E-05	-0.35094	-0.00016856	-0.18466	-8.8695E-05	480.3109176912923	23.797	0.52327	23.725	23.501	24.024	-0.072559					26	17	2	0	0	0	0.34131	1	3559	3559		12.532	3.9383	1	56142			19029	5110	10786	10787	24029	24029					0.1266606702192803
KPHIRPVL	8	Unmodified	_KPHIRPVL_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0-2|ABI3BP;ENST00000470336.5_1_3:100469341-100565327:-|nuORF;nc|ENSG00000154175|Q7Z7G0-3|ABI3BP;nc|ENSG00000154175|Q7Z7G0-4|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2669982910156	2	480.311087	958.60762	0.35187	0.00016901	-0.70502	-0.00033863	-0.35315	-0.00016962	480.31078715958165	23.883	0.40142	23.844	23.592	23.993	-0.038927					22	13	2	0	0	0	0.3366	1	3547	3547		18.135	9.5417	1	52754			19030	5110	10786	10787	24030	24030					0.1266606702192803
KPHLLKLRF	9	Unmodified	_KPHLLKLRF_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3469848632812	2	576.374218	1150.73388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.73	1	112.75	112.25	113.25	0.0131								0	0	0	0.2672	1	29333	29333		0.52476	0	1		+		19031	18580	10787	10788	24031	24031					0.16454573527221328
KPHNPGFGM	9	Oxidation (M)	_KPHNPGFGM(Oxidation (M))_		KPHNPGFGM(1)		KPHNPGFGM(52)	0	0	1		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.73712158203125	2	500.737094	999.459635	0.26761	0.000134	0.15772	7.8975E-05	0.42533	0.00021298	500.7375573550787	16.64	0.57478	16.64	16.377	16.952	0					39	19	4	0	0	0	0.051692	1	1367	1367		52.268	44.979	1	124420			19032	3421	10788	10789	24032	24032		430			-0.04011612294209499
KPHNPGFGM	9	Oxidation (M)	_KPHNPGFGM(Oxidation (M))_					0	0	1		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	500.737094	999.459635	0.14902	7.4622E-05	0.74487	0.00037298	0.89389	0.0004476	500.7376278290921	16.738	0.77383	16.624	16.166	16.94	-0.11434	-0.0083652	0.00011771	NaN	52.268	50	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124840			19033	3421	10788	10789				430			-0.04011612294209499
KPHPPPSGL	9	Unmodified	_KPHPPPSGL_					0	0	0		ENSG00000111727|ENST00000229330|HCFC2;HCFC2|p.G262Wfs*6|1|0.4|ENSG00000111727|chr12:104082514-104082515|-/T|frameshift_variant;HCFC2|p.F260Lfs*30|1|0.2|ENSG00000111727|chr12:104082508-104082508|T/-|frameshift_variant;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2	ENSG00000111727|ENST00000229330|HCFC2	ENSG00000111727|ENST00000229330|HCFC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2637939453125	2	465.263802	928.513051	-0.21251	-9.8875E-05	0.3827	0.00017806	0.17018	7.918E-05	465.2639165008862	19.214	1.1402	19.214	18.765	19.905	0					91	40	3	0	0	0	0.24289	1	2140	2140		18.146	7.3224	1	153330			19034	2386	10789	10790	24033	24033					0.04593508479945285
KPHPPPSGL	9	Unmodified	_KPHPPPSGL_					0	0	0		ENSG00000111727|ENST00000229330|HCFC2;HCFC2|p.G262Wfs*6|1|0.4|ENSG00000111727|chr12:104082514-104082515|-/T|frameshift_variant;HCFC2|p.F260Lfs*30|1|0.2|ENSG00000111727|chr12:104082508-104082508|T/-|frameshift_variant;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2	ENSG00000111727|ENST00000229330|HCFC2	ENSG00000111727|ENST00000229330|HCFC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.263671875	2	465.263802	928.513051	-0.091945	-4.2779E-05	0.26156	0.0001217	0.16962	7.8916E-05	465.2638668670805	19.368	1.3307	19.252	18.68	20.01	-0.11592					95	46	3	0	0	0	0.21389	1	2278	2278		25.399	8.457	1	168150			19035	2386	10789	10790	24034	24034					0.04593508479945285
KPHPPPSGL	9	Unmodified	_KPHPPPSGL_					0	0	0		ENSG00000111727|ENST00000229330|HCFC2;HCFC2|p.G262Wfs*6|1|0.4|ENSG00000111727|chr12:104082514-104082515|-/T|frameshift_variant;HCFC2|p.F260Lfs*30|1|0.2|ENSG00000111727|chr12:104082508-104082508|T/-|frameshift_variant;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2	ENSG00000111727|ENST00000229330|HCFC2	ENSG00000111727|ENST00000229330|HCFC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2639465332031	2	465.263802	928.513051	0.10598	4.931E-05	0.087947	4.0919E-05	0.19393	9.0229E-05	465.2638139314173	19.247	1.1873	19.192	18.766	19.953	-0.055693					103	41	3	0	0	0	0.22061	1	2239	2239		24.021	3.5669	1	174580			19036	2386	10789	10790	24035	24035					0.04593508479945285
KPHPSPLHTV	10	Unmodified	_KPHPSPLHTV_					0	0	0			REV__ENSG00000283434|ENST00000637986|CSNKA2IP	REV__ENSG00000283434|ENST00000637986|CSNKA2IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.8139038085938	2	556.81419	1111.61383	0.15965	8.8897E-05	-0.22715	-0.00012648	-0.067494	-3.7582E-05	556.8140168397335	22.35	0.48591	22.35	22.189	22.675	0					32	16	3	0	0	0	0.38773	2	3151	3151;3175		5.7319	0.43497	1	66732	+		19037	19366	10790	10791	24036;24037	24036					0.062485404627977914
KPHQPVAGK	9	Unmodified	_KPHQPVAGK_					0	0	0		ENST00000413756.5_1_7:56142364-56145823:+|nuORF	ENST00000413756.5_1_7:56142364-56145823:+|nuORF	ENST00000413756.5_1_7:56142364-56145823:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.28240966796875	2	481.282526	960.550499	0.15985	7.6935E-05	-0.39715	-0.00019114	-0.2373	-0.00011421	481.28222992698215	23.784	0.733	23.712	23.501	24.234	-0.072559					49	24	3	0	0	0	0.23784	1	3581	3581		19.257	2.3147	1	183230			19038	10294	10791	10792	24038	24038					0.06864599745563282
KPHRIIKAANI	11	Unmodified	_KPHRIIKAANI_					0	0	0			REV__ENST00000290968.4_7:142478839-142482361:+|nuORF;REV__nc|ENSG00000010438|P35030-4|PRSS3	REV__nc|ENSG00000010438|P35030-4|PRSS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.9347839355469	3	420.934818	1259.78262	0.11081	4.6643E-05	0.049567	2.0865E-05	0.16038	6.7508E-05	420.9347882456033	32.013	1.4507	32.013	31.694	33.145	0					126	51	3	0	0	0	0.45202	1	6130	6130		4.4062	0	1	1018700	+		19039	19754;22876	10792	10793	24039	24039					0.16312442096341329
KPHSGFHVAF	10	Unmodified	_KPHSGFHVAF_					0	0	0		ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.7937622070312	2	563.793258	1125.57196	0.16588	9.3521E-05	0.58547	0.00033008	0.75135	0.0004236	563.7934721604759	30.951	0.85199	30.951	30.674	31.526	0					75	30	3	0	0	0	0.00064744	3	5744	5694;5744;5791		125.53	91.427	1	961640			19040	5965	10793	10794	24040;24041;24042	24041					0.014199847742702332
KPHSGFHVAF	10	Unmodified	_KPHSGFHVAF_					0	0	0		ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.7935791015625	2	563.793258	1125.57196	0.16166	9.1142E-05	0.50085	0.00028238	0.66251	0.00037352	563.793437168362	31.04	0.75159	31.068	30.749	31.501	0.027946					70	26	3	0	0	0	0.0014935	3	5761	5709;5761;5815		114.2	87.318	1	1113700			19041	5965	10793	10794	24043;24044;24045	24044					0.014199847742702332
KPHSGFHVAF	10	Unmodified	_KPHSGFHVAF_					0	0	0		ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7936401367188	2	563.793258	1125.57196	0.15658	8.8276E-05	0.58665	0.00033075	0.74322	0.00041902	563.7934484455141	30.964	0.83982	30.991	30.733	31.573	0.027157					68	30	3	0	0	0	1.1277E-05	3	5729	5680;5729;5780		149.91	115.81	1	1251400			19042	5965	10793	10794	24046;24047;24048	24047					0.014199847742702332
KPHVATLSL	9	Unmodified	_KPHVATLSL_					0	0	0		nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.667724609375	2	483.292559	964.570566	-1.4244	-0.00068839	0.28723	0.00013882	-1.1371	-0.00054957	483.29269365398767	34.681	0.41403	34.757	34.576	34.99	0.075306					20	14	2	0	0	0	0.1939	1	6868	6868		30.637	15.798	1	84531			19043	1155	10794	10795	24049	24049					0.08686350685513844
KPHVATLSL	9	Unmodified	_KPHVATLSL_					0	0	0		nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.668212890625	2	483.292559	964.570566	-0.48356	-0.0002337	-0.57139	-0.00027615	-1.0549	-0.00050985	483.29209023820977	34.73	0.33326	34.807	34.533	34.866	0.077377					15	11	2	0	0	0	0.22674	1	6881	6881		22.736	3.4793	1	82700			19044	1155	10794	10795	24050	24050					0.08686350685513844
KPIALEMQHTI	11	Unmodified	_KPIALEMQHTI_					0	0	0			REV__ENST00000532234.5_1_11:86662820-86662991:+|nuORF	REV__ENST00000532234.5_1_11:86662820-86662991:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.356201171875	2	640.855198	1279.69584	0.29912	0.00019169	-1.1323	-0.00072566	-0.8332	-0.00053396	640.854429568829	59.214	0.56674	59.214	58.941	59.508	0					47	19	3	0	0	0	0.27043	1	14409	14409		24.882	3.2914	1	440910	+		19045	22029	10795	10796	24051	24051					0.0671827475957798
KPIAVGSMSML	11	2 Oxidation (M)	_KPIAVGSM(Oxidation (M))SM(Oxidation (M))L_		KPIAVGSM(1)SM(1)L		KPIAVGSM(150)SM(150)L	0	0	2		ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.30126953125	2	583.30141	1164.58827	-0.12761	-7.4436E-05	-0.049687	-2.8982E-05	-0.1773	-0.00010342	583.3014917266263	35.402	0.82989	35.402	35	35.83	0					75	29	3	0	0	0	1.6342E-09	3	7068	7025;7068;7119		154.75	123.48	1	927150			19046	3026	10796	10797	24052;24053;24054	24053		377;378			0.012555618338637942
KPIAVGSMSML	11	2 Oxidation (M)	_KPIAVGSM(Oxidation (M))SM(Oxidation (M))L_		KPIAVGSM(1)SM(1)L		KPIAVGSM(140)SM(140)L	0	0	2		ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3013916015625	2	583.30141	1164.58827	-0.20915	-0.000122	0.058602	3.4182E-05	-0.15055	-8.7814E-05	583.3014959418831	35.359	0.77337	35.435	34.99	35.764	0.075306					66	27	3	0	0	0	1.3231E-08	3	7044	6998;7044;7094		139.38	109.4	1	978210			19047	3026	10796	10797	24055;24056;24057	24056		377;378			0.012555618338637942
KPIAVGSMSML	11	2 Oxidation (M)	_KPIAVGSM(Oxidation (M))SM(Oxidation (M))L_		KPIAVGSM(1)SM(1)L		KPIAVGSM(130)SM(130)L	0	0	2		ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	ENST00000508867.5_1_5:74842847-74877278:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3010864257812	2	583.30141	1164.58827	-0.41262	-0.00024068	0.060223	3.5128E-05	-0.35239	-0.00020555	583.3016163210341	35.268	0.80595	35.345	34.975	35.781	0.077381					78	28	4	0	0	0	1.6776E-06	3	6991	6991;7043;7091		132.13	103.05	1	1005000			19048	3026	10796	10797	24058;24059;24060	24058		377;378			0.012555618338637942
KPIEASIRGEL	11	Unmodified	_KPIEASIRGEL_					0	0	0		nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8512573242188	2	606.85097	1211.68739	0.50104	0.00030405	-0.050612	-3.0714E-05	0.45042	0.00027334	606.8508361507028	38.773	0.27831	38.872	38.707	38.986	0.099407					14	9	2	0	0	0	0.44443	1	8136	8136		5.4027	1.8157	1	102560			19049	7923	10797	10798	24061	24061					0.09001044114620527
KPIEASIRGEL	11	Unmodified	_KPIEASIRGEL_					0	0	0		nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	606.85097	1211.68739	0.063045	3.8259E-05	0.25891	0.00015712	0.32195	0.00019538	606.8510698705438	38.83	0.33864	38.83	38.649	38.988	0	-0.014557	0.0003774	NaN	5.4027	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116260			19050	7923	10797	10798							0.09001044114620527
KPIEASIRGEL	11	Unmodified	_KPIEASIRGEL_					0	0	0		nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	nc|ENSG00000197043|P08133-2|ANXA6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	606.85097	1211.68739	0.44664	0.00027105	-0.16544	-0.0001004	0.28121	0.00017065	606.8507376982528	38.74	0.26959	38.831	38.703	38.972	0.091465	-0.013346	-0.00013763	NaN	5.4027	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142930			19051	7923	10797	10798							0.09001044114620527
KPIKEKKI	8	Unmodified	_KPIKEKKI_					0	0	0			REV__ENSG00000225180|ENST00000637878|PVALEF	REV__ENSG00000225180|ENST00000637878|PVALEF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.673828125	2	492.334227	982.653902	0.23542	0.00011591	-0.5508	-0.00027118	-0.31538	-0.00015527	492.3339041721597	18.236	0.51055	18.236	18.024	18.535	0					28	17	2	0	0	0	0.34353	1	1908	1908		4.756	0	1	75625	+		19052	19114	10798	10799	24062	24062					0.1618808713335511
KPIKEKKI	8	Unmodified	_KPIKEKKI_					0	0	0			REV__ENSG00000225180|ENST00000637878|PVALEF	REV__ENSG00000225180|ENST00000637878|PVALEF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.67388916015625	2	492.334227	982.653902	0.17567	8.6489E-05	-0.49949	-0.00024592	-0.32382	-0.00015943	492.3339738932867	18.356	0.43155	18.239	18.038	18.47	-0.11739					25	14	2	0	0	0	0.34226	1	1942	1942		10.074	1.4806	1	79220	+		19053	19114	10798	10799	24063	24063					0.1618808713335511
KPIKHTIII	9	Unmodified	_KPIKHTIII_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.85546875	2	531.855327	1061.6961	0.40487	0.00021533	0.29542	0.00015712	0.7003	0.00037246	531.8553150782591	26.641	0.65345	26.641	26.41	27.063	0					45	22	3	0	0	0	0.10059	1	4409	4409		38.176	5.3899	1	221240			19054	3377	10799	10800	24064	24064					0.16772062541758714
KPIKHTIII	9	Unmodified	_KPIKHTIII_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.85546875	2	531.855327	1061.6961	0.31336	0.00016666	0.37431	0.00019908	0.68767	0.00036574	531.8554029483508	26.694	0.65521	26.655	26.342	26.998	-0.038671					45	22	3	0	0	0	0.086462	1	4411	4411		40.239	17.503	1	227340			19055	3377	10799	10800	24065	24065					0.16772062541758714
KPIKHTIII	9	Unmodified	_KPIKHTIII_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	531.855327	1061.6961	0.63632	0.00033843	0.2113	0.00011238	0.84762	0.00045081	531.855244448153	26.681	0.76675	26.659	26.409	27.176	-0.022238	0.007057	-0.00010514	NaN	40.239	50	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229820			19056	3377	10799	10800							0.16772062541758714
KPILDNNAVN	10	Unmodified	_KPILDNNAVN_					0	0	0		ENSG00000139291|ENST00000266673|TMEM19	ENSG00000139291|ENST00000266673|TMEM19	ENSG00000139291|ENST00000266673|TMEM19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2686157226562	2	549.301113	1096.58767	0.31202	0.00017139	1.1655	0.00064021	1.4775	0.0008116	549.8036776356222	27.226	0.28124	27.205	27.1	27.382	-0.02141					11	9	2	0	0	0	0.31926	1	4600	4600		5.7319	1.5423	1	43035			19057	4225	10800	10801	24066	24066					0.04324226500648365
KPILDNNAVN	10	Unmodified	_KPILDNNAVN_					0	0	0		ENSG00000139291|ENST00000266673|TMEM19	ENSG00000139291|ENST00000266673|TMEM19	ENSG00000139291|ENST00000266673|TMEM19	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.301113	1096.58767	0.40624	0.00022315	-2.4852	-0.0013651	-2.0789	-0.001142	549.300899451257	27.177	0.17106	27.166	27.042	27.213	-0.01156	-0.019554	-0.0030902	NaN	5.7319	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37692			19058	4225	10800	10801							0.04324226500648365
KPILSTRSL	9	Unmodified	_KPILSTRSL_					0	0	0		ENSG00000183527|ENST00000331573|PSMG1;nc|ENSG00000183527|O95456-2|PSMG1;ENST00000411828.5_1_21:40547518-40555177:-|nuORF	ENSG00000183527|ENST00000331573|PSMG1	ENSG00000183527|ENST00000331573|PSMG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2579345703125	2	507.818941	1013.62333	0.23778	0.00012075	0.20909	0.00010618	0.44687	0.00022693	507.8192022954155	31.656	0.42387	31.698	31.458	31.882	0.042366					21	14	2	0	0	0	0.21026	1	5964	5964		17.443	0	1	296630			19059	7374	10801	10802	24067	24067					0.1170630874833023
KPINRKVT	8	Unmodified	_KPINRKVT_					0	0	0			REV__ENSG00000075131|ENST00000261881|TIPIN	REV__ENSG00000075131|ENST00000261881|TIPIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.3059387207031	2	478.306001	954.597449	0.087467	4.1836E-05	-0.17697	-8.4645E-05	-0.089502	-4.2809E-05	478.305906463795	16.646	0.83699	16.646	16.405	17.242	0					90	28	5	0	0	0	0.3474	1	1455	1455		25.399	4.9457	1	1888100	+		19060	13800	10802	10803	24068	24068					0.11833459296701676
KPINVRVTTM	10	Oxidation (M)	_KPINVRVTTM(Oxidation (M))_		KPINVRVTTM(1)		KPINVRVTTM(140)	0	0	1		ENSG00000092820|ENST00000367075|EZR;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;EZR|p.N186Kfs*6|1|0.25|ENSG00000092820|chr6:158783657-158783660|AGCA/-|frameshift_variant;nc|ENSG00000137710|P35241-3|RDX	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8344116210938	2	587.834265	1173.65398	0.23956	0.00014082	0.011634	6.8388E-06	0.2512	0.00014766	587.8343000946412	25.495	0.64065	25.495	25.182	25.823	0					63	21	4	0	0	0	2.8213E-05	2	4077	4029;4077		139.38	89.824	1	997220			19061	1426	10803	10804	24069;24070	24070		176			0.07409719071051768
KPINVRVTTM	10	Oxidation (M)	_KPINVRVTTM(Oxidation (M))_		KPINVRVTTM(1)		KPINVRVTTM(150)	0	0	1		ENSG00000092820|ENST00000367075|EZR;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;EZR|p.N186Kfs*6|1|0.25|ENSG00000092820|chr6:158783657-158783660|AGCA/-|frameshift_variant;nc|ENSG00000137710|P35241-3|RDX	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.8345336914062	2	587.834265	1173.65398	0.032406	1.9049E-05	0.40126	0.00023587	0.43366	0.00025492	587.8344780733236	25.474	0.94888	25.418	25.134	26.083	-0.055931					74	32	4	0	0	0	1.0144E-05	2	4094	4044;4094		150.62	101.06	1	1108600			19062	1426	10803	10804	24071;24072	24072		176			0.07409719071051768
KPINVRVTTM	10	Oxidation (M)	_KPINVRVTTM(Oxidation (M))_		KPINVRVTTM(1)		KPINVRVTTM(170)	0	0	1		ENSG00000092820|ENST00000367075|EZR;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;EZR|p.N186Kfs*6|1|0.25|ENSG00000092820|chr6:158783657-158783660|AGCA/-|frameshift_variant;nc|ENSG00000137710|P35241-3|RDX	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.8344116210938	2	587.834265	1173.65398	0.051454	3.0246E-05	0.28814	0.00016938	0.33959	0.00019962	587.8344324802995	25.54	0.72702	25.509	25.209	25.936	-0.031408					76	25	4	0	0	0	1.0905E-08	2	4090	4042;4090		166.77	123	1	1023200			19063	1426	10803	10804	24073;24074	24074		176			0.07409719071051768
KPIQDVNSL	9	Unmodified	_KPIQDVNSL_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2846374511719	2	507.284931	1012.55531	0.040256	2.0421E-05	-0.60486	-0.00030684	-0.56461	-0.00028642	507.28477289485954	34.26	0.42567	34.26	34.074	34.5	0					23	14	2	0	0	0	0.12279	1	6787	6787		34.932	12.274	1	122880			19064	2659	10804	10805	24075	24075					0.04953439097653245
KPIQDVNSL	9	Unmodified	_KPIQDVNSL_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	507.284931	1012.55531	0.051636	2.6194E-05	-0.99436	-0.00050443	-0.94273	-0.00047823	507.28436383211636	34.191	0.47388	34.257	34.04	34.513	0.06636	0.0063211	-0.00048893	NaN	34.932	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109400			19065	2659	10804	10805							0.04953439097653245
KPIQDVNSL	9	Unmodified	_KPIQDVNSL_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.284931	1012.55531	0.13996	7.1E-05	-0.11269	-5.7167E-05	0.027268	1.3833E-05	507.2848204643087	34.169	0.38514	34.235	34.021	34.406	0.0667	-0.015594	0.00040559	NaN	34.932	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119630			19066	2659	10804	10805							0.04953439097653245
KPIQRTIL	8	Unmodified	_KPIQRTIL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.8162841796875	2	484.816202	967.617851	0.14858	7.2036E-05	0.28125	0.00013636	0.42984	0.00020839	484.8162278117912	26.538	0.84576	26.499	26.178	27.024	-0.038671					67	29	3	0	0	0	0.2502	2	4354	4354;4438		36.506	7.4246	1	461280			19067	6196	10805	10806	24076;24077	24076					0.13274629956515582
KPIQRTILM	9	Oxidation (M)	_KPIQRTILM(Oxidation (M))_		KPIQRTILM(1)		KPIQRTILM(130)	0	0	1		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3339233398438	2	558.333901	1114.65325	0.22521	0.00012574	-0.17077	-9.5347E-05	0.054438	3.0395E-05	558.3337712389288	27.056	1.0025	27.056	26.729	27.732	0					98	34	4	0	0	0	0.00019464	3	4539	4492;4539;4593		133.05	89.194	1	1572800			19068	6196	10806	10807	24078;24079;24080	24079		730			0.10050924421989293
KPIQRTILM	9	Oxidation (M)	_KPIQRTILM(Oxidation (M))_		KPIQRTILM(1)		KPIQRTILM(150)	0	0	1		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.333984375	2	558.333901	1114.65325	0.22755	0.00012705	-0.15833	-8.8402E-05	0.069219	3.8647E-05	558.3338016610825	27.004	0.85014	26.983	26.709	27.559	-0.021412					87	29	4	0	0	0	7.3453E-05	2	4534	4486;4534		145.13	100.72	1	1736000			19069	6196	10806	10807	24081;24082	24082		730			0.10050924421989293
KPIQRTILM	9	Oxidation (M)	_KPIQRTILM(Oxidation (M))_		KPIQRTILM(1)		KPIQRTILM(130)	0	0	1		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3339233398438	2	558.333901	1114.65325	0.25282	0.00014116	-0.15801	-8.822E-05	0.094815	5.2939E-05	558.3338311724877	27.046	0.93347	27.035	26.681	27.614	-0.01156					89	32	4	0	0	0	0.00078391	2	4541	4495;4541		125.53	73.261	1	1726300			19070	6196	10806	10807	24083;24084	24084		730			0.10050924421989293
KPISRELRREL	11	Unmodified	_KPISRELRREL_					0	0	0		nc|ENSG00000160201|Q01081-4|U2AF1;nc|ENSG00000160201|Q01081-2|U2AF1;ENSG00000160201|ENST00000291552|U2AF1;ENST00000478282.1_1_21:44514579-44514991:-|nuORF	nc|ENSG00000160201|Q01081-4|U2AF1	nc|ENSG00000160201|Q01081-4|U2AF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.283935546875	3	466.284287	1395.83103	-0.082561	-3.8497E-05	-0.46337	-0.00021606	-0.54593	-0.00025456	466.28402061892837	24.171	1.1007	24.171	23.829	24.93	0					105	37	4	0	0	0	0.40928	1	3675	3675		10.016	6.1704	1	475780			19071	5444	10807	10808	24085	24085					0.14894890945538464
KPISRELRREL	11	Unmodified	_KPISRELRREL_					0	0	0		nc|ENSG00000160201|Q01081-4|U2AF1;nc|ENSG00000160201|Q01081-2|U2AF1;ENSG00000160201|ENST00000291552|U2AF1;ENST00000478282.1_1_21:44514579-44514991:-|nuORF	nc|ENSG00000160201|Q01081-4|U2AF1	nc|ENSG00000160201|Q01081-4|U2AF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.6184387207031	3	466.284287	1395.83103	0.03517	1.6399E-05	-0.24602	-0.00011472	-0.21085	-9.8318E-05	466.2841940289358	24.369	1.123	24.297	23.935	25.058	-0.072559					103	38	4	0	0	0	0.41651	1	3799	3799		9.0676	2.8332	1	480340			19072	5444	10807	10808	24086	24086					0.14894890945538464
KPISRELRREL	11	Unmodified	_KPISRELRREL_					0	0	0		nc|ENSG00000160201|Q01081-4|U2AF1;nc|ENSG00000160201|Q01081-2|U2AF1;ENSG00000160201|ENST00000291552|U2AF1;ENST00000478282.1_1_21:44514579-44514991:-|nuORF	nc|ENSG00000160201|Q01081-4|U2AF1	nc|ENSG00000160201|Q01081-4|U2AF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.6184997558594	3	466.284287	1395.83103	0.045178	2.1066E-05	-0.32131	-0.00014982	-0.27613	-0.00012875	466.2841703446609	24.457	1.208	24.418	23.965	25.173	-0.038927					108	41	4	0	0	0	0.33756	1	3791	3791		18.853	12.618	1	498900			19073	5444	10807	10808	24087	24087					0.14894890945538464
KPITKFKN	8	Unmodified	_KPITKFKN_					0	0	0			REV__ENSG00000205832|ENST00000444310|C16orf96	REV__ENSG00000205832|ENST00000444310|C16orf96	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.28692626953125	2	488.302927	974.591301	0.14608	7.133E-05	0.25415	0.0001241	0.40023	0.00019543	488.30303983184797	39.083	0.14952	39.175	39.052	39.201	0.09267					6	4	2	0	0	0	0.30157	1	8216	8216		30.637	1.555	1	323840	+		19074	19002	10808	10809	24088	24088					0.10298941065184408
KPITVTESK	9	Unmodified	_KPITVTESK_					0	0	0		ENSG00000103544|ENST00000417362|VPS35L;ENST00000544670.5_1_16:19576218-19584460:+|nuORF	ENSG00000103544|ENST00000417362|VPS35L	ENSG00000103544|ENST00000417362|VPS35L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7951965332031	2	501.795132	1001.57571	0.27712	0.00013906	0.29215	0.0001466	0.56927	0.00028566	501.7952345306422	16.419	0.90493	16.357	16.038	16.943	-0.062532					78	31	4	0	0	0	0.28225	1	1392	1392		11.495	1.4208	1	517500			19075	1842	10809	10810	24089	24089					0.07498609757476515
KPKAPPPSL	9	Unmodified	_KPKAPPPSL_					0	0	0		nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.78961181640625	2	467.789653	933.564752	-0.092097	-4.3082E-05	0.086919	4.066E-05	-0.0051783	-2.4224E-06	467.78961202696314	19.585	1.703	19.585	19.095	20.798	0					156	61	4	0	0	0	0.00045155	3	2307	2259;2307;2348		129.77	64.537	1	623670			19076	1276	10810	10811	24090;24091;24092	24091					0.09531252173849225
KPKAPPPSL	9	Unmodified	_KPKAPPPSL_					0	0	0		nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7896423339844	2	467.789653	933.564752	0.10702	5.0063E-05	-0.063925	-2.9903E-05	0.043096	2.016E-05	467.78954249872686	19.741	1.6615	19.626	19.086	20.747	-0.11592					140	58	4	0	0	0	4.3881E-05	3	2366	2322;2366;2408		149.91	81.833	1	694270			19077	1276	10810	10811	24093;24094;24095	24094					0.09531252173849225
KPKAPPPSL	9	Unmodified	_KPKAPPPSL_					0	0	0		nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7896423339844	2	467.789653	933.564752	0.31551	0.00014759	-0.26272	-0.0001229	0.052782	2.4691E-05	467.7894407945553	19.718	1.4097	19.662	19.2	20.61	-0.055693					137	50	4	0	0	0	0.00012108	3	2290	2290;2338;2389		137.42	72.189	1	724050			19078	1276	10810	10811	24096;24097;24098	24096					0.09531252173849225
KPKCTLEERQ	10	Unmodified	_KPKCTLEERQ_					0	0	0		ENST00000585133.1_1_17:29162236-29196669:+|nuORF;nc|ENSG00000176208|Q96QE3-2|ATAD5;ENSG00000176208|ENST00000321990|ATAD5	ENST00000585133.1_1_17:29162236-29196669:+|nuORF	ENST00000585133.1_1_17:29162236-29196669:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.3268432617188	2	616.326805	1230.63906	0.20297	0.00012509	-0.23572	-0.00014528	-0.032748	-2.0183E-05	616.3267458076823	19.505	0.98225	19.449	19.08	20.062	-0.055691					87	34	4	0	0	0	0.4022	1	2314	2314		1.1933	0	1	235150			19079	6910	10811	10812	24099	24099					0.03296227203054514
KPKDPLKISL	10	Unmodified	_KPKDPLKISL_					0	0	0		nc|ENSG00000092020|Q969Q6-2|PPP2R3C;ENSG00000092020|ENST00000261475|PPP2R3C	nc|ENSG00000092020|Q969Q6-2|PPP2R3C	nc|ENSG00000092020|Q969Q6-2|PPP2R3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.8038330078125	2	569.863349	1137.71214	0.46152	0.00026301	-0.60988	-0.00034755	-0.14835	-8.454E-05	569.8628893622509	36.816	0.58974	36.816	36.562	37.152	0					42	20	3	0	0	0	0.22163	1	7534	7534		41.347	26.099	1	279770			19080	1414	10812	10813	24100	24100					0.14879723987974103
KPKDPLKISL	10	Unmodified	_KPKDPLKISL_					0	0	0		nc|ENSG00000092020|Q969Q6-2|PPP2R3C;ENSG00000092020|ENST00000261475|PPP2R3C	nc|ENSG00000092020|Q969Q6-2|PPP2R3C	nc|ENSG00000092020|Q969Q6-2|PPP2R3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.8037719726562	2	569.863349	1137.71214	0.47694	0.00027179	-0.80344	-0.00045785	-0.3265	-0.00018606	569.8627052156301	36.755	0.60299	36.842	36.566	37.169	0.087406					43	21	3	0	0	0	0.25625	1	7475	7475		25.997	18.388	1	245220			19081	1414	10812	10813	24101	24101					0.14879723987974103
KPKDPLKISL	10	Unmodified	_KPKDPLKISL_					0	0	0		nc|ENSG00000092020|Q969Q6-2|PPP2R3C;ENSG00000092020|ENST00000261475|PPP2R3C	nc|ENSG00000092020|Q969Q6-2|PPP2R3C	nc|ENSG00000092020|Q969Q6-2|PPP2R3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.8038330078125	2	569.863349	1137.71214	0.6372	0.00036312	-0.67628	-0.00038539	-0.039087	-2.2274E-05	569.8627259020363	36.767	0.60581	36.86	36.536	37.142	0.093018					43	21	3	0	0	0	0.25203	1	7490	7490		33.821	18.573	1	230030			19082	1414	10812	10813	24102	24102					0.14879723987974103
KPKEADESL	9	Unmodified	_KPKEADESL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7664489746094	2	508.766571	1015.51859	0.063074	3.209E-05	-0.76656	-0.00039	-0.70349	-0.00035791	508.76632900817197	15.402	0.85409	15.402	15.181	16.035	0					92	29	4	0	0	0	4.984E-07	4	1024	1024;1069;1114;1166		160.69	81.962	1	2179100			19083	4024	10813	10814	24103;24104;24105;24106	24103					0.011451424810957178
KPKEADESL	9	Unmodified	_KPKEADESL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7663269042969	2	508.766571	1015.51859	0.069351	3.5283E-05	-0.74339	-0.00037821	-0.67404	-0.00034293	508.7663619628001	15.56	1.1493	15.45	14.93	16.079	-0.10981					105	39	5	0	0	0	1.6536E-07	5	1058	1058;1102;1138;1146;1197		173.69	94.958	1	2281200			19084	4024	10813	10814	24107;24108;24109;24110;24111	24107					0.011451424810957178
KPKEADESL	9	Unmodified	_KPKEADESL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.76641845703125	2	508.766571	1015.51859	0.016178	8.2308E-06	-0.6479	-0.00032963	-0.63173	-0.0003214	508.7664222640866	15.507	1.0228	15.442	15.013	16.036	-0.064413					95	34	4	0	0	0	3.6949E-07	3	1056	1056;1101;1148		165.72	89.959	1	2578700			19085	4024	10813	10814	24112;24113;24114	24112					0.011451424810957178
KPKEPQPEV	9	Unmodified	_KPKEPQPEV_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3;chr17:82237893-82238811|315|36.59|0.76|5.59|+|1|SLC16A3,SLC16A3|1	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2923583984375	2	526.292756	1050.57096	0.35493	0.0001868	-0.92773	-0.00048826	-0.5728	-0.00030146	526.2922270849646	18.535	0.78852	18.535	18.051	18.839	0					44	27	2	0	0	0	0.22935	1	1995	1995		19.362	9.288	1	85503			19086	4390	10814	10815	24115	24115					0.04769725614710296
KPKEPQPEV	9	Unmodified	_KPKEPQPEV_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3;chr17:82237893-82238811|315|36.59|0.76|5.59|+|1|SLC16A3,SLC16A3|1	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2923583984375	2	526.292756	1050.57096	0.27075	0.00014249	-0.75968	-0.00039981	-0.48893	-0.00025732	526.2922462216095	18.801	0.82822	18.684	18.089	18.918	-0.11739					52	28	2	0	0	0	0.2869	1	2035	2035		10.8	2.644	1	81481			19087	4390	10814	10815	24116	24116					0.04769725614710296
KPKEPQPEV	9	Unmodified	_KPKEPQPEV_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3;chr17:82237893-82238811|315|36.59|0.76|5.59|+|1|SLC16A3,SLC16A3|1	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	526.292756	1050.57096	0.15859	8.3464E-05	-0.70166	-0.00036928	-0.54307	-0.00028581	526.292242772817	18.64	0.75764	18.581	18.171	18.929	-0.058172	-0.018619	8.6684E-05	NaN	19.362	52	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94366			19088	4390	10814	10815							0.04769725614710296
KPKETGGIL	9	Unmodified	_KPKETGGIL_					0	0	0		nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1;nc|ENSG00000121940|Q96S66-4|CLCC1;nc|ENSG00000121940|Q96S66-3|CLCC1	nc|ENSG00000121940|Q96S66-2|CLCC1	nc|ENSG00000121940|Q96S66-2|CLCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.27789306640625	2	471.784567	941.554582	0.10356	4.886E-05	0.1523	7.1854E-05	0.25587	0.00012071	471.78450666214525	20.257	0.52162	20.257	20.073	20.594	0					30	19	2	0	0	0	0.2422	1	2461	2461		19.362	0	1	233490			19089	3023	10815	10816	24117	24117					0.08146644448629559
KPKETGGIL	9	Unmodified	_KPKETGGIL_					0	0	0		nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1;nc|ENSG00000121940|Q96S66-4|CLCC1;nc|ENSG00000121940|Q96S66-3|CLCC1	nc|ENSG00000121940|Q96S66-2|CLCC1	nc|ENSG00000121940|Q96S66-2|CLCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7845764160156	2	471.784567	941.554582	0.39037	0.00018417	-0.058932	-2.7803E-05	0.33144	0.00015637	471.7844618347525	20.485	0.64808	20.375	20.16	20.808	-0.11003					35	23	2	0	0	0	0.18378	1	2555	2555		26.021	6.6588	1	273710			19090	3023	10815	10816	24118	24118					0.08146644448629559
KPKETGGIL	9	Unmodified	_KPKETGGIL_					0	0	0		nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1;nc|ENSG00000121940|Q96S66-4|CLCC1;nc|ENSG00000121940|Q96S66-3|CLCC1	nc|ENSG00000121940|Q96S66-2|CLCC1	nc|ENSG00000121940|Q96S66-2|CLCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.78466796875	2	471.784567	941.554582	0.53788	0.00025376	-0.24044	-0.00011344	0.29743	0.00014032	471.78436053002804	20.372	0.88408	20.319	20.093	20.977	-0.05291					46	31	2	0	0	0	0.13296	1	2512	2512		33.445	4.3633	1	306560			19091	3023	10815	10816	24119	24119					0.08146644448629559
KPKFILSVL	9	Unmodified	_KPKFILSVL_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8446044921875	2	522.844428	1043.6743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.321	1	56.321	55.821	56.821	0								0	0	0	0.14229	1	13513	13513		36.506	20.659	1				19092	5384	10816	10817	24120	24120					0.15421257793195764
KPKFILSVL	9	Unmodified	_KPKFILSVL_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.3385620117188	2	522.844428	1043.6743	0.96855	0.0005064	-0.92753	-0.00048495	0.041022	2.1448E-05	522.8437496072546	56.075	0.59718	56.146	55.88	56.477	0.070885					48	21	3	0	0	0	0.059216	1	13445	13445		51.63	28.894	1	2636400			19093	5384	10816	10817	24121	24121					0.15421257793195764
KPKFILSVL	9	Unmodified	_KPKFILSVL_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8442993164062	2	522.844428	1043.6743	1.0481	0.00054799	-0.53313	-0.00027875	0.51495	0.00026924	522.8439501482753	56.27	0.73503	56.251	55.965	56.7	-0.019077					59	26	3	0	0	0	0.04299	2	13514	13514;13540		55.503	30.103	1	4127200			19094	5384	10816	10817	24122;24123	24122					0.15421257793195764
KPKGLLTL	8	Unmodified	_KPKGLLTL_					0	0	0			REV__ENST00000373899.3_1_10:60146421-60154831:+|nuORF	REV__ENST00000373899.3_1_10:60146421-60154831:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.576171875	2	435.294571	868.574589	-0.081217	-3.5353E-05	-0.35543	-0.00015472	-0.43665	-0.00019007	435.2943330942951	37.76	0.69384	37.858	37.654	38.348	0.097527					34	24	2	0	0	0	0.34198	1	7854	7854		6.7232	0	1	209010	+		19095	14581	10817	10818	24124	24124					0.13504440179224275
KPKIATANL	9	Unmodified	_KPKIATANL_					0	0	0		nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.30010986328125	2	478.300384	954.586216	0.069367	3.3178E-05	-0.14121	-6.7541E-05	-0.071843	-3.4363E-05	478.30026288102954	24.068	1.5676	24.068	23.643	25.21	0					126	53	4	0	0	0	0.0013924	4	3681	3598;3639;3681;3725		117.76	58.009	1	1754500			19096	2906	10818	10819	24125;24126;24127;24128	24127					0.10710637202555517
KPKIATANL	9	Unmodified	_KPKIATANL_					0	0	0		nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.3004150390625	2	478.300384	954.586216	0.23741	0.00011355	-0.19921	-9.5282E-05	0.038204	1.8273E-05	478.30023571664407	24.214	1.5563	24.141	23.646	25.202	-0.072559					121	53	4	0	0	0	2.973E-07	4	3693	3646;3693;3738;3783		168.54	100.46	1	1971100			19097	2906	10818	10819	24129;24130;24131;24132	24130					0.10710637202555517
KPKIATANL	9	Unmodified	_KPKIATANL_					0	0	0		nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.3004455566406	2	478.300384	954.586216	0.19785	9.4634E-05	-0.16635	-7.9566E-05	0.031502	1.5068E-05	478.3002589582021	24.215	1.276	24.176	23.737	25.013	-0.038927					110	43	4	0	0	0	8.0996E-05	3	3685	3639;3685;3737		143.91	78.674	1	2040400			19098	2906	10818	10819	24133;24134;24135	24134					0.10710637202555517
KPKKELIK	8	Unmodified	_KPKKELIK_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.6737976074219	2	492.334227	982.653902	0.035249	1.7354E-05	-0.20959	-0.00010319	-0.17435	-8.5836E-05	492.3340474873007	18.328	0.53952	18.27	18.115	18.654	-0.058174					27	18	2	0	0	0	0.34117	1	1936	1936		9.3831	0.63772	1	83117			19099	3587	10819	10820	24136	24136					0.1618808713336648
KPKKGGGISF	10	Unmodified	_KPKKGGGISF_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8059387207031	2	509.805834	1017.59712	0.22328	0.00011383	0.016889	8.6099E-06	0.24017	0.00012244	509.8056667170687	16.552	0.54537	16.552	16.322	16.867	0					39	18	3	0	0	0	0.066034	1	1378	1378		55.503	24.866	1	360440			19100	2198	10820	10821	24137	24137					0.08902039576855714
KPKKGGGISF	10	Unmodified	_KPKKGGGISF_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.805908203125	2	509.805834	1017.59712	0.072028	3.672E-05	0.62995	0.00032115	0.70198	0.00035787	509.80591768510635	16.65	0.60978	16.536	16.33	16.94	-0.11434					43	21	4	0	0	0	0.10215	1	1423	1423		47.594	16.958	1	311670			19101	2198	10820	10821	24138	24138					0.08902039576855714
KPKKGGGISF	10	Unmodified	_KPKKGGGISF_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.80609130859375	2	509.805834	1017.59712	0.23987	0.00012229	0.44584	0.00022729	0.68571	0.00034958	509.80586486004665	16.588	0.5607	16.525	16.324	16.885	-0.062534					41	19	3	0	0	0	0.10215	1	1397	1397		47.594	16.958	1	353850			19102	2198	10820	10821	24139	24139					0.08902039576855714
KPKNAIHTF	9	Unmodified	_KPKNAIHTF_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.283447265625	2	528.303458	1054.59236	0.41046	0.00021685	-0.54888	-0.00028998	-0.13842	-7.3126E-05	528.3028095264385	16.594	0.37368	16.594	16.405	16.779	0					23	12	3	0	0	0	0.16853	1	1365	1365		31.268	18.226	1	109160			19103	3003	10821	10822	24140	24140					0.0672515543406007
KPKNAIHTF	9	Unmodified	_KPKNAIHTF_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2833862304688	2	528.303458	1054.59236	0.2232	0.00011792	-0.20522	-0.00010842	0.017977	9.4975E-06	528.3029298548804	16.71	0.32817	16.596	16.421	16.749	-0.11434					22	11	3	0	0	0	0.090256	1	1409	1409		57.722	38.465	1	115250			19104	3003	10821	10822	24141	24141					0.0672515543406007
KPKNAIHTF	9	Unmodified	_KPKNAIHTF_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2835693359375	2	528.303458	1054.59236	0.47918	0.00025315	-0.37996	-0.00020073	0.099222	5.2419E-05	528.3028952121549	16.629	0.31577	16.567	16.414	16.729	-0.062534					23	10	3	0	0	0	0.050251	1	1387	1387		71.922	46.523	1	95786			19105	3003	10821	10822	24142	24142					0.0672515543406007
KPKPKKSPV	9	Unmodified	_KPKPKKSPV_					0	0	0		PHACTR2|p.R299Lfs*3|1|0.06|ENSG00000112419|chr6:143765493-143765494|-/TTGCATTA|frameshift_variant;nc|ENSG00000112419|O75167|PHACTR2;ENSG00000112419|ENST00000440869|PHACTR2	PHACTR2|p.R299Lfs*3|1|0.06|ENSG00000112419|chr6:143765493-143765494|-/TTGCATTA|frameshift_variant	PHACTR2|p.R299Lfs*3|1|0.06|ENSG00000112419|chr6:143765493-143765494|-/TTGCATTA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.8013610839844	2	504.831852	1007.64915	0.10235	5.167E-05	-0.1383	-6.9819E-05	-0.03595	-1.8149E-05	504.83176003314554	16.384	0.37291	16.27	16.075	16.448	-0.11434					18	12	2	0	0	0	0.26188	1	1353	1353		1.6526	0.96225	1	51968			19106	2436	10822	10823	24143	24143					0.14563202990609625
KPKPKPNQNL	10	Unmodified	_KPKPKPNQNL_					0	0	0		nc|ENSG00000171992|Q8N3V7-3|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO;ENSG00000171992|ENST00000307662|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3483276367188	2	582.348397	1162.68224	-0.042765	-2.4904E-05	-0.077377	-4.506E-05	-0.12014	-6.9964E-05	582.3482358593147	13.185	0.33769	13.185	13.058	13.396	0					25	11	3	0	0	0	0.34795	1	355	355		13.042	4.2971	1	105940			19107	12837	10823	10824	24144	24144					0.10740785042662537
KPKPKPNQNL	10	Unmodified	_KPKPKPNQNL_					0	0	0		nc|ENSG00000171992|Q8N3V7-3|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO;ENSG00000171992|ENST00000307662|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3485717773438	2	582.348397	1162.68224	-0.058044	-3.3802E-05	0.37067	0.00021586	0.31262	0.00018205	582.3485721110532	13.254	0.29548	13.154	13.042	13.337	-0.099291					21	9	3	0	0	0	0.31867	1	382	382		18.146	1.0335	1	126110			19108	12837	10823	10824	24145	24145					0.10740785042662537
KPKPKPNQNL	10	Unmodified	_KPKPKPNQNL_					0	0	0		nc|ENSG00000171992|Q8N3V7-3|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO;ENSG00000171992|ENST00000307662|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.3482666015625	2	582.348397	1162.68224	-0.08533	-4.9692E-05	0.22523	0.00013116	0.1399	8.1472E-05	582.3484077773755	13.247	0.36921	13.179	13.047	13.416	-0.067496					26	12	4	0	0	0	0.31867	1	372	372		18.146	5.1039	1	107830			19109	12837	10823	10824	24146	24146					0.10740785042662537
KPKPTPDYL	9	Unmodified	_KPKPTPDYL_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.7977905273438	2	529.797675	1057.5808	0.35278	0.0001869	-0.27005	-0.00014307	0.082738	4.3834E-05	529.7972790957673	26.126	0.51474	26.126	25.925	26.44	0					26	17	2	0	0	0	0.25714	1	4281	4281		15.248	9.0427	1	100570			19110	2439	10824	10825	24147	24147					0.05430913620079991
KPKPTPDYL	9	Unmodified	_KPKPTPDYL_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	529.797675	1057.5808	0.22468	0.00011904	-0.7715	-0.00040874	-0.54682	-0.0002897	529.7970129037224	26.152	0.49933	26.113	25.902	26.402	-0.038671	-0.023722	-0.0002075	NaN	15.248	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96302			19111	2439	10824	10825							0.05430913620079991
KPKQISQAI	9	Unmodified	_KPKQISQAI_					0	0	0		ENST00000471613.1_1_1:161068499-161069114:+|nuORF;nc|ENSG00000162755|Q8NEP7-3|KLHDC9	ENST00000471613.1_1_1:161068499-161069114:+|nuORF	ENST00000471613.1_1_1:161068499-161069114:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8110656738281	2	506.811116	1011.60768	0.44605	0.00022606	-0.60562	-0.00030693	-0.15957	-8.0872E-05	506.8107632230963	36.596	0.62742	36.596	36.358	36.985	0					38	21	2	0	0	0	0.2719	1	7494	7494		13.042	0	1	342630			19112	10878	10825	10826	24148	24148					0.10234022231270501
KPKQISQAIYP	11	Unmodified	_KPKQISQAIYP_					0	0	0		ENST00000471613.1_1_1:161068499-161069114:+|nuORF;nc|ENSG00000162755|Q8NEP7-3|KLHDC9	ENST00000471613.1_1_1:161068499-161069114:+|nuORF	ENST00000471613.1_1_1:161068499-161069114:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.870849609375	2	636.869163	1271.72377	0.42013	0.00026757	1.3905	0.00088554	1.8106	0.0011531	636.8701828546242	63.522	0.45672	63.522	63.34	63.797	0					32	16	3	0	0	0	0.36943	1	15756	15756		15.248	2.206	1	275160			19113	10878	10826	10827	24149	24149					0.09877921011320723
KPKQISQAIYP	11	Unmodified	_KPKQISQAIYP_					0	0	0		ENST00000471613.1_1_1:161068499-161069114:+|nuORF;nc|ENSG00000162755|Q8NEP7-3|KLHDC9	ENST00000471613.1_1_1:161068499-161069114:+|nuORF	ENST00000471613.1_1_1:161068499-161069114:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.8705444335938	2	636.869163	1271.72377	0.66974	0.00042654	2.2662	0.0014433	2.9359	0.0018698	636.8702980694956	63.408	0.56549	63.503	63.311	63.876	0.095722					31	19	3	0	0	0	0.36943	1	15699	15699		15.248	2.206	1	296040			19114	10878	10826	10827	24150	24150					0.09877921011320723
KPKQLKDKA	9	Unmodified	_KPKQLKDKA_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7462768554688	2	528.332216	1054.64988	0.60019	0.0003171	-0.57088	-0.00030161	0.02931	1.5485E-05	528.3319603785693	40.492	0.53577	40.585	40.343	40.879	0.09267					37	18	3	0	0	0	0.25202	1	8577	8577		6.7232	0.51738	1	498280			19115	1574	10827	10828	24151	24151					0.12473997639654044
KPKQLKDKA	9	Unmodified	_KPKQLKDKA_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	528.332216	1054.64988	0.57969	0.00030627	-0.17732	-9.3685E-05	0.40237	0.00021259	528.3322411725993	40.699	0.56609	40.699	40.473	41.039	0	0.08023	0.0001375	NaN	6.7232	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412920			19116	1574	10827	10828							0.12473997639654044
KPKQLKDKA	9	Unmodified	_KPKQLKDKA_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.332216	1054.64988	0.58756	0.00031042	-0.26331	-0.00013911	0.32425	0.00017131	528.3320944653884	40.473	0.51978	40.572	40.315	40.835	0.099407	-0.046362	4.6646E-05	NaN	6.7232	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362310			19117	1574	10827	10828							0.12473997639654044
KPKQPSKSV	9	Unmodified	_KPKQPSKSV_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.8034362792969	2	499.803291	997.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.207	1	12.139	11.639	12.639	-0.06806								0	0	0	0.23829	1	57	57		10.151	1.995	1				19118	3074	10828	10829	24152	24152					0.09313735714238192
KPKRALANHLL	11	Unmodified	_KPKRALANHLL_					0	0	0			REV__ENSG00000170370|ENST00000553456|EMX2	REV__ENSG00000170370|ENST00000553456|EMX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.9347839355469	3	420.934818	1259.78262	0.096683	4.0697E-05	0.075754	3.1887E-05	0.17244	7.2585E-05	420.93478346432465	31.966	1.3836	32.007	31.672	33.055	0.040991					132	49	4	0	0	0	0.43198	1	6098	6098		7.0371	2.6309	1	1055400	+		19119	17576	10829	10830	24153	24153					0.1631244209631859
KPKRALANHLL	11	Unmodified	_KPKRALANHLL_					0	0	0			REV__ENSG00000170370|ENST00000553456|EMX2	REV__ENSG00000170370|ENST00000553456|EMX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.5699462890625	3	420.934818	1259.78262	0.096683	4.0697E-05	0.075754	3.1887E-05	0.17244	7.2585E-05	420.93478346432465	31.966	1.3836	32.007	31.672	33.055	0.040991					132	49	4	0	0	0	0.33122	1	6039	6039		4.4062	0	1	1055400	+		19120	17576	10829	10830	24154	24154					0.1631244209631859
KPKRGRRRVS	10	Unmodified	_KPKRGRRRVS_					0	0	0			REV__ENSG00000038219|ENST00000040738|BOD1L1	REV__ENSG00000038219|ENST00000040738|BOD1L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.9327087402344	3	413.933811	1238.7796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.978	1	39.978	39.478	40.478	0								0	0	0	0.37789	1	8484	8484		3.0723	0.44103	1		+		19121	13512	10830	10831	24155	24155					0.16976611762174798
KPKRRPRYKY	10	Unmodified	_KPKRRPRYKY_					0	0	0			REV__ENSG00000168875|ENST00000306087|SOX14	REV__ENSG00000168875|ENST00000306087|SOX14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.263671875	3	464.6176	1390.83097	-0.017889	-8.3114E-06	-0.19357	-8.9937E-05	-0.21146	-9.8249E-05	464.6173002544137	19.649	0.27134	19.534	19.341	19.612	-0.11592					11	8	2	0	0	0	0.32137	1	2278	2278		1.7423	1.2878	1	22751	+		19122	17484	10831	10832	24156	24156					0.15118935736222738
KPKSFKVNVTL	11	Unmodified	_KPKSFKVNVTL_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.9281005859375	3	420.927329	1259.76016	-0.035623	-1.4995E-05	0.10193	4.2907E-05	0.066312	2.7913E-05	420.9279583590691	35.564	2.565	35.564	35.17	37.735	0					321	92	6	0	0	0	0.0013351	7	7101	7063;7101;7152;7196;7245;7296;7348		70.345	47.194	1	73340000			19123	4110	10832	10833	24157;24158;24159;24160;24161;24162;24163	24158					0.1406679790804901
KPKSFKVNVTL	11	Unmodified	_KPKSFKVNVTL_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8875732421875	2	630.887355	1259.76016	0.35875	0.00022633	0.036308	2.2906E-05	0.39506	0.00024924	630.8873006409411	35.581	1.0309	35.581	35.276	36.307	0					121	37	4	0	0	0	2.4769E-25	4	7135	7090;7135;7181;7231		209.96	118.88	1	6107000			19124	4110	10832	10833	24164;24165;24166;24167	24165					0.1406679790804901
KPKSFKVNVTL	11	Unmodified	_KPKSFKVNVTL_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.9280090332031	3	420.927329	1259.76016	0.023198	9.7646E-06	0.086622	3.6462E-05	0.10982	4.6226E-05	420.92794431187883	35.473	3.0701	35.548	35.151	38.221	0.075306					343	111	6	0	0	0	0.0039637	7	7125	7040;7082;7125;7169;7218;7267;7314		77.813	42.309	1	77029000			19125	4110	10832	10833	24168;24169;24170;24171;24172;24173;24174	24170					0.1406679790804901
KPKSFKVNVTL	11	Unmodified	_KPKSFKVNVTL_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.887451171875	2	630.887355	1259.76016	0.24346	0.00015359	0.22395	0.00014129	0.46741	0.00029488	630.887395027683	35.473	0.96068	35.548	35.234	36.195	0.075306					111	34	4	0	0	0	2.2657E-18	4	7118	7071;7118;7161;7211		194.76	113.26	1	7440300			19126	4110	10832	10833	24175;24176;24177;24178	24176					0.1406679790804901
KPKSFKVNVTL	11	Unmodified	_KPKSFKVNVTL_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.9280700683594	3	420.927329	1259.76016	-0.26442	-0.0001113	0.40162	0.00016905	0.1372	5.7753E-05	420.92808762773177	35.463	4.0169	35.548	35.124	39.141	0.085144					362	145	6	0	0	0	0.0010602	5	7063	7063;7107;7157;7210;7259		81.642	55.296	1	74898000			19127	4110	10832	10833	24179;24180;24181;24182;24183	24179					0.1406679790804901
KPKSKNTN	8	Unmodified	_KPKSKNTN_					0	0	0		ENSG00000179055|ENST00000641530|OR13D1;nc|ENSG00000179055|Q8NGV5|OR13D1	ENSG00000179055|ENST00000641530|OR13D1	ENSG00000179055|ENST00000641530|OR13D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7642517089844	2	458.764166	915.513779	-0.19747	-9.0594E-05	0.41875	0.00019211	0.22128	0.00010152	458.76423800633626	13.8	0.46142	13.734	13.575	14.037	-0.066067					46	15	4	0	0	0	0.34198	1	540	540		10.824	2.9138	1	196400			19128	7100	10833	10834	24184	24184					0.05264303129001746
KPKSQQTSF	9	Unmodified	_KPKSQQTSF_					0	0	0		NFX1|p.A397Efs*25|1|0.03|ENSG00000086102|chr9:33301418-33301419|-/AGAAGAATCCAAA|frameshift_variant;NFX1|p.S556Kfs*22|1|0.03|ENSG00000086102|chr9:33318808-33318809|-/AAAACAAAACGTTAGTAACATGTAT|frameshift_variant;nc|ENSG00000086102|Q12986-3|NFX1;nc|ENSG00000086102|Q12986-2|NFX1;ENST00000379521.8_2_9:33290558-33364805:+|nuORF;ENSG00000086102|ENST00000379540|NFX1	NFX1|p.A397Efs*25|1|0.03|ENSG00000086102|chr9:33301418-33301419|-/AGAAGAATCCAAA|frameshift_variant	NFX1|p.A397Efs*25|1|0.03|ENSG00000086102|chr9:33301418-33301419|-/AGAAGAATCCAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7822875976562	2	525.782556	1049.55056	0.19106	0.00010046	-0.7374	-0.00038771	-0.54634	-0.00028726	525.7820284899362	13.977	0.42688	13.977	13.794	14.221	0					23	14	2	0	0	0	0.064268	1	581	581		47.594	23.574	1	198810			19129	1277	10834	10835	24185	24185					0.027765549549030766
KPKSQQTSF	9	Unmodified	_KPKSQQTSF_					0	0	0		NFX1|p.A397Efs*25|1|0.03|ENSG00000086102|chr9:33301418-33301419|-/AGAAGAATCCAAA|frameshift_variant;NFX1|p.S556Kfs*22|1|0.03|ENSG00000086102|chr9:33318808-33318809|-/AAAACAAAACGTTAGTAACATGTAT|frameshift_variant;nc|ENSG00000086102|Q12986-3|NFX1;nc|ENSG00000086102|Q12986-2|NFX1;ENST00000379521.8_2_9:33290558-33364805:+|nuORF;ENSG00000086102|ENST00000379540|NFX1	NFX1|p.A397Efs*25|1|0.03|ENSG00000086102|chr9:33301418-33301419|-/AGAAGAATCCAAA|frameshift_variant	NFX1|p.A397Efs*25|1|0.03|ENSG00000086102|chr9:33301418-33301419|-/AGAAGAATCCAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.782470703125	2	525.782556	1049.55056	0.10926	5.7446E-05	-0.30576	-0.00016076	-0.1965	-0.00010332	525.7823439108403	14.054	0.44899	13.949	13.763	14.212	-0.10466					35	15	4	0	0	0	0.15763	1	612	612		29.841	7.1043	1	178220			19130	1277	10834	10835	24186	24186					0.027765549549030766
KPKSQQTSF	9	Unmodified	_KPKSQQTSF_					0	0	0		NFX1|p.A397Efs*25|1|0.03|ENSG00000086102|chr9:33301418-33301419|-/AGAAGAATCCAAA|frameshift_variant;NFX1|p.S556Kfs*22|1|0.03|ENSG00000086102|chr9:33318808-33318809|-/AAAACAAAACGTTAGTAACATGTAT|frameshift_variant;nc|ENSG00000086102|Q12986-3|NFX1;nc|ENSG00000086102|Q12986-2|NFX1;ENST00000379521.8_2_9:33290558-33364805:+|nuORF;ENSG00000086102|ENST00000379540|NFX1	NFX1|p.A397Efs*25|1|0.03|ENSG00000086102|chr9:33301418-33301419|-/AGAAGAATCCAAA|frameshift_variant	NFX1|p.A397Efs*25|1|0.03|ENSG00000086102|chr9:33301418-33301419|-/AGAAGAATCCAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7820434570312	2	525.782556	1049.55056	0.15607	8.2061E-05	-0.615	-0.00032335	-0.45892	-0.00024129	525.7820839091187	14.026	0.34941	13.96	13.802	14.152	-0.066068					25	11	3	0	0	0	0.073988	1	604	604		43.982	14.9	1	233130			19131	1277	10834	10835	24187	24187					0.027765549549030766
KPKSRTYLKP	10	Unmodified	_KPKSRTYLKP_					0	0	0			REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.58404541015625	3	406.583674	1216.72919	-0.48115	-0.00019563	1.1525	0.00046858	0.67133	0.00027295	406.5841177808658	103.66	0.30725	103.66	103.61	103.92	0					51	43	2	0	0	0	0.38515	1	27528	27528		5.7834	4.3283	1	3992800	+		19132	17525	10835	10836	24188	24188					0.1294964459377752
KPKSRTYLKP	10	Unmodified	_KPKSRTYLKP_					0	0	0			REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.5840148925781	3	406.583674	1216.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.18	1	103.18	102.68	103.68	0								0	0	0	0.37739	1	27424	27424		1.5923	0.13716	1		+		19133	17525	10835	10836	24189	24189					0.1294964459377752
KPKSRTYLKP	10	Unmodified	_KPKSRTYLKP_					0	0	0			REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.5835876464844	3	406.583674	1216.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.61	1	103.62	103.12	104.12	0.0082703								0	0	0	0.37664	1	27532	27532		1.7423	0.28716	1		+		19134	17525	10835	10836	24190	24190					0.1294964459377752
KPKSRTYLKP	10	Unmodified	_KPKSRTYLKP_					0	0	0			REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2488708496094	3	406.583674	1216.72919	-0.087398	-3.5535E-05	0.88622	0.00036032	0.79882	0.00032479	406.5840517640603	103.16	0.21548	103.16	102.96	103.18	-0.0011063					32	25	2	0	0	0	0.36786	1	27458	27458		8.4443	6.852	1	4147800	+		19135	17525	10835	10836	24191	24191					0.1294964459377752
KPKSRTYLKP	10	Unmodified	_KPKSRTYLKP_					0	0	0			REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.5835876464844	3	406.583674	1216.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.71	1	103.71	103.21	104.21	-0.0011139								0	0	0	0.37044	1	27577	27577		3.3196	1.2357	1		+		19136	17525	10835	10836	24192	24192					0.1294964459377752
KPKSRTYLKP	10	Unmodified	_KPKSRTYLKP_					0	0	0			REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.58416748046875	3	406.583674	1216.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.96	1	103.96	103.46	104.46	-0.0011139								0	0	0	0.37664	1	27637	27637		1.7423	0.28716	1		+		19137	17525	10835	10836	24193	24193					0.1294964459377752
KPKSRTYLKP	10	Unmodified	_KPKSRTYLKP_					0	0	0			REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.5836181640625	3	406.583674	1216.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.98	1	103.98	103.48	104.48	-0.0011139								0	0	0	0.37044	1	27643	27643		3.3196	1.8645	1		+		19138	17525	10835	10836	24194	24194					0.1294964459377752
KPKSSSTAL	9	Unmodified	_KPKSSSTAL_					0	0	0		AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000483900.1_1_1:247015289-247040365:-|nuORF;ENST00000420969.1_1_2:162360026-162361742:-|nuORF	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENST00000420969.1_1_2:162360026-162361742:-|nuORF	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.766357421875	2	459.766374	917.518196	-0.27888	-0.00012822	0.31018	0.00014261	0.031301	1.4391E-05	459.76645260968326	13.041	1.0888	13.041	12.874	13.962	0					88	38	4	0	0	0	0.020233	1	297	297		63.961	29.559	1	554190			19139	22;10368	10836	10837	24195	24195					0.056137675519039476
KPKSSSTAL	9	Unmodified	_KPKSSSTAL_					0	0	0		AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000483900.1_1_1:247015289-247040365:-|nuORF;ENST00000420969.1_1_2:162360026-162361742:-|nuORF	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENST00000420969.1_1_2:162360026-162361742:-|nuORF	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.7662353515625	2	459.766374	917.518196	-0.2435	-0.00011195	0.14626	6.7244E-05	-0.097239	-4.4707E-05	459.7663673188147	13.094	0.7393	12.995	12.869	13.608	-0.099291					73	25	4	0	0	0	0.020233	2	317	317;363		63.961	21.866	1	565220			19140	22;10368	10836	10837	24196;24197	24196					0.056137675519039476
KPKSSSTAL	9	Unmodified	_KPKSSSTAL_					0	0	0		AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000483900.1_1_1:247015289-247040365:-|nuORF;ENST00000420969.1_1_2:162360026-162361742:-|nuORF	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENST00000420969.1_1_2:162360026-162361742:-|nuORF	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7662658691406	2	459.766374	917.518196	-0.23458	-0.00010785	0.14098	6.4819E-05	-0.093596	-4.3032E-05	459.76635918037385	13.068	0.84043	13	12.819	13.66	-0.067495					77	29	3	0	0	0	0.020233	1	308	308		63.961	27.833	1	495570			19141	22;10368	10836	10837	24198	24198					0.056137675519039476
KPKSVSKKL	9	Unmodified	_KPKSVSKKL_					0	0	0		nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENSG00000132274|ENST00000379965|TRIM22	nc|ENSG00000132274|Q8IYM9-2|TRIM22	nc|ENSG00000132274|Q8IYM9-2|TRIM22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.83697509765625	2	507.837134	1013.65972	-0.036779	-1.8678E-05	-0.31583	-0.00016039	-0.35261	-0.00017907	507.83684462542095	12.381	0.50665	12.381	12.245	12.751	0					29	16	3	0	0	0	0.0083763	1	106	106		81.915	32.361	1	359260			19142	3615	10837	10838	24199	24199					0.15343185645053836
KPKSVSKKL	9	Unmodified	_KPKSVSKKL_					0	0	0		nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENSG00000132274|ENST00000379965|TRIM22	nc|ENSG00000132274|Q8IYM9-2|TRIM22	nc|ENSG00000132274|Q8IYM9-2|TRIM22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.8369445800781	2	507.837134	1013.65972	0.0055302	2.8085E-06	-0.25479	-0.00012939	-0.24926	-0.00012659	507.8369005551389	12.363	0.52748	12.266	12.148	12.676	-0.096607					40	17	4	0	0	0	0.21623	1	109	109		27.223	17.149	1	332640			19143	3615	10837	10838	24200	24200					0.15343185645053836
KPKSVSKKL	9	Unmodified	_KPKSVSKKL_					0	0	0		nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENSG00000132274|ENST00000379965|TRIM22	nc|ENSG00000132274|Q8IYM9-2|TRIM22	nc|ENSG00000132274|Q8IYM9-2|TRIM22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.8369445800781	2	507.837134	1013.65972	-0.15593	-7.9185E-05	-0.10566	-5.3658E-05	-0.26159	-0.00013284	507.836994901257	12.395	0.44416	12.327	12.196	12.64	-0.06806					32	14	4	0	0	0	0.038291	1	116	116		57.249	22.317	1	397240			19144	3615	10837	10838	24201	24201					0.15343185645053836
KPKSYSSSL	9	Unmodified	_KPKSYSSSL_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2;ENST00000583822.5_1_17:59949574-59962361:-|nuORF	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7715148925781	2	498.771657	995.528761	0.2899	0.0001446	0.22588	0.00011266	0.51579	0.00025726	498.77160208587395	16.647	0.664	16.647	16.405	17.069	0					37	22	3	0	0	0	0.086462	1	1380	1380		40.239	15.248	1	206430			19145	2189	10838	10839	24202	24202					0.030817502063428037
KPKSYSSSL	9	Unmodified	_KPKSYSSSL_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2;ENST00000583822.5_1_17:59949574-59962361:-|nuORF	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.77154541015625	2	498.771657	995.528761	0.17191	8.5742E-05	0.30525	0.00015225	0.47715	0.00023799	498.77179651379697	16.777	0.54516	16.662	16.395	16.94	-0.11434					42	19	3	0	0	0	0.15763	1	1418	1418		29.841	1.3461	1	197340			19146	2189	10838	10839	24203	24203					0.030817502063428037
KPKSYSSSL	9	Unmodified	_KPKSYSSSL_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2;ENST00000583822.5_1_17:59949574-59962361:-|nuORF	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.771657	995.528761	0.33218	0.00016568	0.31036	0.0001548	0.64254	0.00032048	498.7716412430467	16.624	0.61689	16.562	16.298	16.915	-0.062532	-0.062225	1.5613E-05	NaN	40.239	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190140			19147	2189	10838	10839							0.030817502063428037
KPKTGRSLL	9	Unmodified	_KPKTGRSLL_					0	0	0		ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000525495.6_2_17:45219385-45266538:-|nuORF;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENST00000425026.1_1_Y:10029032-10029215:-|nuORF	ENSG00000004897|ENST00000066544|CDC27	ENSG00000004897|ENST00000066544|CDC27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.6715393066406	2	500.319109	998.623664	0.1991	9.9613E-05	-0.078293	-3.9171E-05	0.12081	6.0442E-05	500.3189449578569	16.109	0.4566	16.109	15.892	16.349	0					27	15	2	0	0	0	0.25527	1	1190	1190		8.7454	0	1	101280			19148	319	10839	10840	24204	24204					0.12429728468180201
KPKTPSLTVF	10	Unmodified	_KPKTPSLTVF_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.334228515625	2	559.334424	1116.6543	-0.0064133	-3.5872E-06	-0.010352	-5.7901E-06	-0.016765	-9.3773E-06	559.3343705682906	42.439	0.5369	42.439	42.141	42.678	0					42	19	3	0	0	0	0.016475	3	9220	9220;9268;9282		75.571	29.831	1	777250			19149	7227	10840	10841	24205;24206;24207	24205					0.10063462062566941
KPKTPSLTVF	10	Unmodified	_KPKTPSLTVF_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.33447265625	2	559.334424	1116.6543	0.39316	0.00021991	-0.52521	-0.00029377	-0.13205	-7.3861E-05	559.3338511594133	42.285	0.60893	42.37	42.009	42.618	0.085201					59	21	4	0	0	0	0.030754	1	9161	9161		63.227	5.5055	1	895580			19150	7227	10840	10841	24208	24208					0.10063462062566941
KPKTPSLTVF	10	Unmodified	_KPKTPSLTVF_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.3343505859375	2	559.334424	1116.6543	0.36786	0.00020576	-0.50733	-0.00028377	-0.13947	-7.8012E-05	559.3338850287973	42.168	0.65193	42.259	41.929	42.581	0.091362					53	22	3	0	0	0	0.014191	1	9131	9131		78.06	22.558	1	831150			19151	7227	10840	10841	24209	24209					0.10063462062566941
KPKTTNIEL	9	Unmodified	_KPKTTNIEL_					0	0	0		nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3084106445312	2	522.308406	1042.60226	0.43197	0.00022562	-0.24462	-0.00012777	0.18734	9.785E-05	522.3082325032972	24.751	0.84203	24.751	24.454	25.296	0					52	28	2	0	0	0	0.017549	2	3854	3854;3907		67.838	17.905	1	612880			19152	2782	10841	10842	24210;24211	24210					0.0826629864880033
KPKTTNIEL	9	Unmodified	_KPKTTNIEL_					0	0	0		nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.308349609375	2	522.308406	1042.60226	0.30826	0.00016101	-0.07505	-3.9199E-05	0.23321	0.00012181	522.3083080094286	24.879	0.73543	24.823	24.514	25.25	-0.055931					47	25	2	0	0	0	0.026579	2	3888	3888;3942		61.602	17.744	1	732280			19153	2782	10841	10842	24212;24213	24212					0.0826629864880033
KPKTTNIEL	9	Unmodified	_KPKTTNIEL_					0	0	0		nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3082885742188	2	522.308406	1042.60226	0.10567	5.5194E-05	0.14377	7.5094E-05	0.24945	0.00013029	522.3084215290035	24.858	0.7745	24.827	24.545	25.319	-0.031408					48	26	2	0	0	0	0.01251	1	3875	3875		75.571	25.638	1	698300			19154	2782	10841	10842	24214	24214					0.0826629864880033
KPKTVWKKD	9	Unmodified	_KPKTVWKKD_					0	0	0		OBSCN|p.E268K|1|0.21|ENSG00000154358|chr1:228212585-228212585|G/A|missense_variant	OBSCN|p.E268K|1|0.21|ENSG00000154358|chr1:228212585-228212585|G/A|missense_variant	OBSCN|p.E268K|1|0.21|ENSG00000154358|chr1:228212585-228212585|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.34033203125	2	565.340041	1128.66553	0.19222	0.00010867	0.79275	0.00044817	0.98497	0.00055684	565.3404336217327	35.544	0.81823	35.544	35.17	35.988	0					45	29	2	0	0	0	0.11461	1	7123	7123		36.127	0	1	508190			19155	13035	10842	10843	24215	24215					0.1063428415668568
KPKTVWKKD	9	Unmodified	_KPKTVWKKD_					0	0	0		OBSCN|p.E268K|1|0.21|ENSG00000154358|chr1:228212585-228212585|G/A|missense_variant	OBSCN|p.E268K|1|0.21|ENSG00000154358|chr1:228212585-228212585|G/A|missense_variant	OBSCN|p.E268K|1|0.21|ENSG00000154358|chr1:228212585-228212585|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.3403930664062	2	565.340041	1128.66553	0.29299	0.00016564	0.37692	0.00021309	0.66991	0.00037873	565.3402734125301	35.438	0.63384	35.514	35.182	35.816	0.075306					38	22	2	0	0	0	0.07432	1	7114	7114		43.858	0	1	461380			19156	13035	10842	10843	24216	24216					0.1063428415668568
KPKTVWKKD	9	Unmodified	_KPKTVWKKD_					0	0	0		OBSCN|p.E268K|1|0.21|ENSG00000154358|chr1:228212585-228212585|G/A|missense_variant	OBSCN|p.E268K|1|0.21|ENSG00000154358|chr1:228212585-228212585|G/A|missense_variant	OBSCN|p.E268K|1|0.21|ENSG00000154358|chr1:228212585-228212585|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.3408813476562	2	565.340041	1128.66553	-0.13979	-7.9029E-05	1.1211	0.00063382	0.98135	0.0005548	565.3406547395217	35.443	0.66495	35.523	35.227	35.891	0.079708					49	23	3	0	0	0	0.07432	1	7076	7076		43.858	0	1	482660			19157	13035	10842	10843	24217	24217					0.1063428415668568
KPKVYTSKST	10	Unmodified	_KPKVYTSKST_					0	0	0		ENST00000396668.7_1_7:12271604-12271805:+|nuORF	ENST00000396668.7_1_7:12271604-12271805:+|nuORF	ENST00000396668.7_1_7:12271604-12271805:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.8267822265625	2	569.826963	1137.63937	0.05407	3.0811E-05	-0.03427	-1.9528E-05	0.0198	1.1283E-05	569.8269243813105	15.93	0.47327	15.93	15.679	16.152	0					33	16	3	0	0	0	0.39427	1	1152	1152		4.5289	0	1	69601			19158	10122	10843	10844	24218	24218					0.07605970194549627
KPKVYTSKST	10	Unmodified	_KPKVYTSKST_					0	0	0		ENST00000396668.7_1_7:12271604-12271805:+|nuORF	ENST00000396668.7_1_7:12271604-12271805:+|nuORF	ENST00000396668.7_1_7:12271604-12271805:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.8271484375	2	569.826963	1137.63937	0.15808	9.0077E-05	-0.14454	-8.2365E-05	0.013534	7.7118E-06	569.8268550705409	16.042	0.55557	15.928	15.692	16.247	-0.11434					38	18	3	0	0	0	0.38027	1	1203	1203		7.1017	0	1	79031			19159	10122	10843	10844	24219	24219					0.07605970194549627
KPKVYTSKST	10	Unmodified	_KPKVYTSKST_					0	0	0		ENST00000396668.7_1_7:12271604-12271805:+|nuORF	ENST00000396668.7_1_7:12271604-12271805:+|nuORF	ENST00000396668.7_1_7:12271604-12271805:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.8271484375	2	569.826963	1137.63937	0.096165	5.4798E-05	0.14922	8.5028E-05	0.24538	0.00013983	569.8269058460389	16	0.44583	15.937	15.701	16.147	-0.062533					33	15	3	0	0	0	0.37751	1	1191	1191		7.609	0	1	97845			19160	10122	10843	10844	24220	24220					0.07605970194549627
KPLASLKIIA	10	Unmodified	_KPLASLKIIA_					0	0	0			REV__ENSG00000138759|ENST00000512123|FRAS1	REV__ENSG00000138759|ENST00000512123|FRAS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7841796875	2	527.35516	1052.69577	0.61009	0.00032173	-0.53067	-0.00027985	0.079423	4.1884E-05	527.3548403586057	40.093	0.33021	40.192	40.038	40.368	0.099407					18	11	2	0	0	0	0.31642	1	8528	8528		10.8	0	1	94294	+		19161	15953	10844	10845	24221	24221					0.17152642821906738
KPLDNASKL	9	Unmodified	_KPLDNASKL_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.28668212890625	2	493.287474	984.560395	0.27866	0.00013746	-0.85344	-0.00042099	-0.57478	-0.00028353	493.2867618857224	22.174	0.59333	22.174	21.94	22.533	0					41	20	3	0	0	0	0.13671	1	3053	3053		32.898	10.24	1	172750			19162	2720	10845	10846	24222	24222					0.06749742960278127
KPLDNASKL	9	Unmodified	_KPLDNASKL_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.28656005859375	2	493.287474	984.560395	0.3211	0.00015839	-0.33698	-0.00016623	-0.01588	-7.8334E-06	493.2869703516674	22.239	0.66686	22.138	21.832	22.499	-0.10034					62	24	4	0	0	0	0.24385	1	3077	3077		19.626	5.4078	1	158710			19163	2720	10845	10846	24223	24223					0.06749742960278127
KPLDNASKL	9	Unmodified	_KPLDNASKL_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.28729248046875	2	493.287474	984.560395	0.17015	8.3931E-05	-0.065362	-3.2242E-05	0.10478	5.1688E-05	493.2871358698451	22.16	0.64172	22.111	21.855	22.496	-0.049376					68	22	5	0	0	0	0.053792	1	3081	3081		51.488	11.249	1	190570			19164	2720	10845	10846	24224	24224					0.06749742960278127
KPLDRKLIL	9	Unmodified	_KPLDRKLIL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.364990234375	2	548.366059	1094.71756	0.54573	0.00029926	-1.4553	-0.00079804	-0.90958	-0.00049878	548.3651325784155	33.543	0.68469	33.543	33.285	33.969	0					61	24	3	0	0	0	0.0028032	2	6500	6500;6547		103.82	35.985	1	671640			19165	5758	10846	10847	24225;24226	24225					0.17399447570483062
KPLDRKLIL	9	Unmodified	_KPLDRKLIL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3653564453125	2	548.366059	1094.71756	0.75918	0.00041631	-1.5395	-0.00084419	-0.78028	-0.00042788	548.3650833474213	33.405	0.66467	33.471	33.239	33.904	0.06636					56	23	3	0	0	0	0.003673	2	6463	6463;6516		96.936	35.334	1	761000			19166	5758	10846	10847	24227;24228	24227					0.17399447570483062
KPLDRKLIL	9	Unmodified	_KPLDRKLIL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3653564453125	2	548.366059	1094.71756	0.32738	0.00017952	-1.0807	-0.0005926	-0.75328	-0.00041307	548.3654017804505	33.431	0.69231	33.498	33.215	33.907	0.0667					59	24	3	0	0	0	0.0028032	2	6469	6469;6530		103.82	35.985	1	778330			19167	5758	10846	10847	24229;24230	24229					0.17399447570483062
KPLEIRNQ	8	Unmodified	_KPLEIRNQ_					0	0	0			REV__ENSG00000162621|ENST00000294635|LRRC53	REV__ENSG00000162621|ENST00000294635|LRRC53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2929992675781	2	499.293091	996.571629	0.17455	8.7152E-05	0.17178	8.5771E-05	0.34634	0.00017292	499.29313488588286	17.897	0.69834	17.78	17.259	17.957	-0.11739					36	23	3	0	0	0	0.43758	1	1693	1693		10.074	0	1	82760	+		19168	16993	10847	10848	24231	24231					0.07320565054419603
KPLFKVSTF	9	Unmodified	_KPLFKVSTF_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.818603515625	2	533.81841	1065.62227	0.59453	0.00031737	-1.3402	-0.00071542	-0.74567	-0.00039805	533.8171637650164	45.508	0.78045	45.573	45.119	45.9	0.065048					45	28	2	0	0	0	0.086462	1	10145	10145		40.239	23.126	1	483020			19169	3917	10848	10849	24232	24232					0.09208094379414433
KPLFKVSTF	9	Unmodified	_KPLFKVSTF_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	533.81841	1065.62227	0.78946	0.00042143	-1.1513	-0.00061459	-0.36185	-0.00019316	533.8171901621209	45.699	0.7885	45.699	45.266	46.055	0	0.16038	-0.00066793	NaN	40.239	57	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302200			19170	3917	10848	10849							0.09208094379414433
KPLFKVSTF	9	Unmodified	_KPLFKVSTF_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	533.81841	1065.62227	0.58182	0.00031059	0.11979	6.3946E-05	0.70161	0.00037453	533.8184900298214	45.283	0.64925	45.344	45.115	45.765	0.061283	-0.19469	0.00068914	NaN	40.239	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341850			19171	3917	10848	10849							0.09208094379414433
KPLGIKTAL	9	Unmodified	_KPLGIKTAL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.8132629394531	2	470.813128	939.611703	-0.0024157	-1.1373E-06	0.14612	6.8794E-05	0.1437	6.7657E-05	470.8130730792777	33.223	1.2091	33.223	32.895	34.104	0					105	43	4	0	0	0	0.0013924	4	6430	6379;6430;6482;6534		117.76	52.526	1	1623000			19172	6752	10849	10850	24233;24234;24235;24236	24234					0.13948111724982937
KPLGIKTAL	9	Unmodified	_KPLGIKTAL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.8133239746094	2	470.813128	939.611703	0.14551	6.851E-05	-0.084385	-3.973E-05	0.061129	2.878E-05	470.8129552206619	33.134	1.0531	33.189	32.84	33.893	0.055309					100	37	4	0	0	0	0.0013924	4	6393	6344;6393;6438;6489		117.76	52.526	1	1510700			19173	6752	10849	10850	24237;24238;24239;24240	24238					0.13948111724982937
KPLGIKTAL	9	Unmodified	_KPLGIKTAL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.813232421875	2	470.813128	939.611703	0.11516	5.422E-05	0.13699	6.4495E-05	0.25215	0.00011872	470.8130584468786	33.132	1.1847	33.186	32.85	34.035	0.054371					93	42	3	0	0	0	0.00051734	4	6390	6344;6390;6443;6496		128.93	63.697	1	1602000			19174	6752	10849	10850	24241;24242;24243;24244	24242					0.13948111724982937
KPLGPTAAF	9	Unmodified	_KPLGPTAAF_					0	0	0		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.6247863769531	2	451.260728	900.506903	0.315	0.00014215	-0.26017	-0.00011741	0.054825	2.4741E-05	451.26053127163806	40.342	0.60825	40.342	39.968	40.576	0					51	21	3	0	0	0	0.22143	1	8588	8588		24.991	16.398	1	289360			19175	7591	10850	10851	24245	24245					0.052669902484126396
KPLGPTAAF	9	Unmodified	_KPLGPTAAF_					0	0	0		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.6246337890625	2	451.260728	900.506903	0.40786	0.00018405	-0.47744	-0.00021545	-0.069582	-3.14E-05	451.2603815857694	40.157	0.61438	40.249	39.943	40.557	0.09267					48	21	3	0	0	0	0.16853	1	8541	8541		38.176	18.737	1	370960			19176	7591	10850	10851	24246	24246					0.052669902484126396
KPLGPTAAF	9	Unmodified	_KPLGPTAAF_					0	0	0		nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	nc|ENSG00000186111|O60331-4|PIP5K1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.6246337890625	2	451.260728	900.506903	0.31359	0.00014151	-0.42164	-0.00019027	-0.10806	-4.8761E-05	451.2604073006584	40.149	0.63709	40.248	39.894	40.532	0.099407					50	22	3	0	0	0	0.18936	1	8509	8509		32.786	6.4444	1	431860			19177	7591	10850	10851	24247	24247					0.052669902484126396
KPLHQRKREP	10	Unmodified	_KPLHQRKREP_					0	0	0			REV__ENST00000411509.1_1_1:182034012-182038378:-|nuORF	REV__ENST00000411509.1_1_1:182034012-182038378:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.2351989746094	3	430.258072	1287.75239	-0.11902	-5.1208E-05	-1.0037	-0.00043185	-1.1227	-0.00048306	430.59211816339075	17.507	0.32675	17.507	17.272	17.598	0					16	11	2	0	0	0	0.32148	1	1666	1666		1.4551	0	1	26786	+		19178	20773	10851	10852	24248	24248					0.12002083431138999
KPLIKDLSL	9	Unmodified	_KPLIKDLSL_					0	0	0		ENST00000553745.5_1_14:74753379-74769587:-|nuORF;ENSG00000119688|ENST00000356924|ABCD4;ENST00000496015.5_1_14:74755930-74759615:-|nuORF	ENST00000553745.5_1_14:74753379-74769587:-|nuORF	ENST00000553745.5_1_14:74753379-74769587:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2747192382812	2	513.831517	1025.64848	0.48988	0.00025171	-0.27958	-0.00014366	0.2103	0.00010806	513.8313017021372	46.036	0.52528	46.036	45.746	46.271	0					34	18	2	0	0	0	0.24429	1	10336	10336		13.615	2.1202	1	373320			19179	2899	10852	10853	24249	24249					0.13668363550914364
KPLIKDLSL	9	Unmodified	_KPLIKDLSL_					0	0	0		ENST00000553745.5_1_14:74753379-74769587:-|nuORF;ENSG00000119688|ENST00000356924|ABCD4;ENST00000496015.5_1_14:74755930-74759615:-|nuORF	ENST00000553745.5_1_14:74753379-74769587:-|nuORF	ENST00000553745.5_1_14:74753379-74769587:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8092651367188	2	513.831517	1025.64848	0.068126	3.5005E-05	0.064044	3.2908E-05	0.13217	6.7913E-05	513.8314365828302	45.887	0.56158	45.946	45.647	46.209	0.059834					35	19	2	0	0	0	0.23216	1	10321	10321		17.443	5.9479	1	453770			19180	2899	10852	10853	24250	24250					0.13668363550914364
KPLIKDLSL	9	Unmodified	_KPLIKDLSL_					0	0	0		ENST00000553745.5_1_14:74753379-74769587:-|nuORF;ENSG00000119688|ENST00000356924|ABCD4;ENST00000496015.5_1_14:74755930-74759615:-|nuORF	ENST00000553745.5_1_14:74753379-74769587:-|nuORF	ENST00000553745.5_1_14:74753379-74769587:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8090209960938	2	513.831517	1025.64848	0.38246	0.00019652	-0.23372	-0.00012009	0.14874	7.6428E-05	513.8313390210618	45.901	0.52491	45.966	45.675	46.2	0.065048					32	18	2	0	0	0	0.21026	1	10314	10314		17.443	5.202	1	460930			19181	2899	10852	10853	24251	24251					0.13668363550914364
KPLKCKVC	8	Unmodified	_KPLKCKVC_					0	0	0		ENSG00000112238|ENST00000369215|PRDM13	ENSG00000112238|ENST00000369215|PRDM13	ENSG00000112238|ENST00000369215|PRDM13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7662048339844	2	459.766809	917.519064	-0.27888	-0.00012822	-0.63421	-0.00029159	-0.91309	-0.00041981	459.76645260968326	13.041	1.0888	13.041	12.874	13.962	0					88	38	4	0	0	0	0.46491	1	466	466		0.69038	0	1	554190			19182	2424	10853	10854	24252	24252					0.057005673955927705
KPLKGSRYK	9	Unmodified	_KPLKGSRYK_					0	0	0			REV__ENSG00000112578|ENST00000230340|BYSL	REV__ENSG00000112578|ENST00000230340|BYSL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8338012695312	2	538.832383	1075.65021	0.12559	6.7675E-05	2.1448	0.0011557	2.2704	0.0012234	538.8335413288813	12.381	0.45128	12.381	12.273	12.724	0					23	14	3	0	0	0	0.26099	1	121	121		2.9952	0	1	89663	+		19183	14780	10854	10855	24253	24253					0.11541417359512707
KPLKSCMK	8	Unmodified	_KPLKSCMK_					0	0	0			REV__ENSG00000197746|ENST00000394936|PSAP	REV__ENSG00000197746|ENST00000394936|PSAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.246826171875	2	467.764266	933.513979	0.13846	6.4765E-05	-0.62842	-0.00029395	-0.48996	-0.00022919	467.76400325434116	21.817	0.14254	21.768	21.661	21.804	-0.049377					5	4	2	0	0	0	0.34337	1	2924	2924		5.2307	0.90143	1	27016	+		19184	18762	10855	10856	24254	24254					0.044562635329839395
KPLKSTSL	8	Unmodified	_KPLKSTSL_					0	0	0		ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.5870361328125	2	437.273835	872.533118	-0.015589	-6.8166E-06	0.2127	9.3009E-05	0.19711	8.6193E-05	437.27400119089833	16.493	0.57676	16.43	16.177	16.754	-0.062534					28	19	2	0	0	0	0.34414	1	1287	1287		2.0598	0	1	34184			19185	4258	10856	10857	24255	24255					0.0917525941989652
KPLLRALL	8	Unmodified	_KPLLRALL_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.3240661621094	2	462.323663	922.632772	-0.20896	-9.6605E-05	0.69616	0.00032185	0.4872	0.00022524	462.3238573321235	45.976	0.44386	46.035	45.792	46.236	0.059837					27	15	2	0	0	0	0.25425	1	10292	10292		36.044	5.8194	1	520700			19186	3816	10857	10858	24256	24256					0.16836121824496786
KPLLRALL	8	Unmodified	_KPLLRALL_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.32342529296875	2	462.323663	922.632772	0.29957	0.0001385	0.068122	3.1494E-05	0.36769	0.00016999	462.32355990177217	46	0.49732	46.065	45.811	46.309	0.065048					38	17	3	0	0	0	0.25425	1	10347	10347		36.044	5.8194	1	577030			19187	3816	10857	10858	24257	24257					0.16836121824496786
KPLLRALL	8	Unmodified	_KPLLRALL_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	462.323663	922.632772	0.048643	2.2489E-05	0.19892	9.1963E-05	0.24756	0.00011445	462.32367820309474	46.057	0.4379	46.057	45.86	46.298	0	0.0048349	-9.6355E-05	NaN	36.044	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	507230			19188	3816	10857	10858							0.16836121824496786
KPLLWGRMN	9	Unmodified	_KPLLWGRMN_					0	0	0		USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant;nc|ENSG00000123552|Q70EL2-3|USP45;ENSG00000123552|ENST00000500704|USP45	USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant	USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2933959960938	2	557.813136	1113.61172	-0.034928	-1.9483E-05	1.3648	0.00076129	1.3298	0.0007418	558.3150857903794	13.132	0.32845	13.132	12.925	13.254	0					16	11	2	0	0	0	0.26168	1	362	362		1.8442	0.6509	1	27719			19189	3113	10858	10859	24258	24258					0.05945788453345813
KPLLWGRMN	9	Unmodified	_KPLLWGRMN_					0	0	0		USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant;nc|ENSG00000123552|Q70EL2-3|USP45;ENSG00000123552|ENST00000500704|USP45	USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant	USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	557.813136	1113.61172	-0.0050422	-2.8126E-06	1.3447	0.00075011	1.3397	0.0007473	557.8138237768964	13.226	0.34812	13.127	12.869	13.217	-0.099291	0.048709	-3.5635E-05	NaN	1.8442	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21891			19190	3113	10858	10859							0.05945788453345813
KPLLWGRMN	9	Unmodified	_KPLLWGRMN_					0	0	0		USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant;nc|ENSG00000123552|Q70EL2-3|USP45;ENSG00000123552|ENST00000500704|USP45	USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant	USP45|p.L404Yfs*15|1|0.25|ENSG00000123552|chr6:99464701-99464701|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	557.813136	1113.61172	-0.15881	-8.8586E-05	1.4536	0.00081086	1.2948	0.00072228	557.8138129914597	13.044	0.17049	12.976	12.851	13.022	-0.067496	-0.10204	8.5875E-05	NaN	1.8442	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12122			19191	3113	10858	10859							0.05945788453345813
KPLNLAHI	8	Unmodified	_KPLNLAHI_					0	0	0		nc|ENSG00000134769|Q9Y4J8-8|DTNA;nc|ENSG00000134769|Q9Y4J8-9|DTNA;nc|ENSG00000134769|Q9Y4J8-7|DTNA;nc|ENSG00000134769|Q9Y4J8-6|DTNA;nc|ENSG00000134769|Q9Y4J8-10|DTNA;nc|ENSG00000134769|Q9Y4J8-11|DTNA;nc|ENSG00000134769|Q9Y4J8-16|DTNA;nc|ENSG00000134769|Q9Y4J8-5|DTNA;nc|ENSG00000134769|Q9Y4J8-4|DTNA;nc|ENSG00000134769|Q9Y4J8-3|DTNA;nc|ENSG00000134769|Q9Y4J8-13|DTNA;nc|ENSG00000134769|Q9Y4J8-2|DTNA;nc|ENSG00000134769|Q9Y4J8-14|DTNA;nc|ENSG00000134769|Q9Y4J8-15|DTNA;nc|ENSG00000134769|Q9Y4J8|DTNA;ENSG00000134769|ENST00000444659|DTNA	nc|ENSG00000134769|Q9Y4J8-8|DTNA	nc|ENSG00000134769|Q9Y4J8-8|DTNA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.5673828125	2	453.281995	904.549437	0.27191	0.00012325	-1.9194	-0.00087001	-1.6475	-0.00074676	453.2812814175557	35.728	0.54664	35.728	35.466	36.012	0					21	19	2	0	0	0	0.30503	1	7147	7147		23.148	0	1	145860			19192	3811	10859	10860	24259	24259					0.0933438537664415
KPLNLAHI	8	Unmodified	_KPLNLAHI_					0	0	0		nc|ENSG00000134769|Q9Y4J8-8|DTNA;nc|ENSG00000134769|Q9Y4J8-9|DTNA;nc|ENSG00000134769|Q9Y4J8-7|DTNA;nc|ENSG00000134769|Q9Y4J8-6|DTNA;nc|ENSG00000134769|Q9Y4J8-10|DTNA;nc|ENSG00000134769|Q9Y4J8-11|DTNA;nc|ENSG00000134769|Q9Y4J8-16|DTNA;nc|ENSG00000134769|Q9Y4J8-5|DTNA;nc|ENSG00000134769|Q9Y4J8-4|DTNA;nc|ENSG00000134769|Q9Y4J8-3|DTNA;nc|ENSG00000134769|Q9Y4J8-13|DTNA;nc|ENSG00000134769|Q9Y4J8-2|DTNA;nc|ENSG00000134769|Q9Y4J8-14|DTNA;nc|ENSG00000134769|Q9Y4J8-15|DTNA;nc|ENSG00000134769|Q9Y4J8|DTNA;ENSG00000134769|ENST00000444659|DTNA	nc|ENSG00000134769|Q9Y4J8-8|DTNA	nc|ENSG00000134769|Q9Y4J8-8|DTNA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	453.281995	904.549437	0.2465	0.00011173	-1.7837	-0.00080852	-1.5372	-0.00069678	453.28159665195085	35.548	0.43963	35.63	35.54	35.98	0.082355	-0.049169	8.1235E-05	NaN	23.148	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142980			19193	3811	10859	10860							0.0933438537664415
KPLNRLRQS	9	Unmodified	_KPLNRLRQS_					0	0	0			REV__ENST00000521383.5_1_8:104258897-104310599:-|nuORF	REV__ENST00000521383.5_1_8:104258897-104310599:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3380737304688	2	556.338364	1110.66217	0.033586	1.8685E-05	-0.44393	-0.00024698	-0.41035	-0.00022829	556.3380181556242	12.491	0.31867	12.394	12.295	12.614	-0.096607					22	10	3	0	0	0	0.31763	1	148	148		6.2058	0	1	117360	+		19194	21899	10860	10861	24260	24260					0.1112703410267386
KPLNRLRQS	9	Unmodified	_KPLNRLRQS_					0	0	0			REV__ENST00000521383.5_1_8:104258897-104310599:-|nuORF	REV__ENST00000521383.5_1_8:104258897-104310599:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	556.338364	1110.66217	-0.040711	-2.2649E-05	-0.59454	-0.00033077	-0.63525	-0.00035342	556.3380123359082	12.509	0.27172	12.509	12.397	12.669	0	0.049877	-0.00016774	NaN	6.2058	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105030	+		19195	21899	10860	10861							0.1112703410267386
KPLNRLRQS	9	Unmodified	_KPLNRLRQS_					0	0	0			REV__ENST00000521383.5_1_8:104258897-104310599:-|nuORF	REV__ENST00000521383.5_1_8:104258897-104310599:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	556.338364	1110.66217	0.033586	1.8685E-05	-0.44393	-0.00024698	-0.41035	-0.00022829	556.3380181556242	12.491	0.31867	12.394	12.295	12.614	-0.096607	-0.064757	-1.5974E-07	NaN	6.2058	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117360	+		19196	21899	10860	10861							0.1112703410267386
KPLPLKTAL	9	Unmodified	_KPLPLKTAL_					0	0	0		nc|ENSG00000170802|P32314-2|FOXN2;ENSG00000170802|ENST00000340553|FOXN2	nc|ENSG00000170802|P32314-2|FOXN2	nc|ENSG00000170802|P32314-2|FOXN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7560119628906	2	490.828778	979.643003	0.45403	0.00022285	-1.1202E-05	-5.4981E-09	0.45402	0.00022285	490.8286526915998	35.804	0.42764	35.804	35.665	36.093	0					26	15	2	0	0	0	0.21538	1	7216	7216		26.268	5.8145	1	108800			19197	6480	10861	10862	24261	24261					0.1523668475906561
KPLRRNNSY	9	Unmodified	_KPLRRNNSY_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1;ENST00000490674.1_1_2:113416785-113418150:+|nuORF	ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.9010620117188	2	574.320171	1146.62579	0.20156	0.00011576	-0.076387	-4.3871E-05	0.12518	7.1891E-05	574.3200186228205	32.837	0.92457	32.837	32.469	33.393	0					52	32	2	0	0	0	0.25879	1	6227	6227		4.756	0.81161	1	135080			19198	4568	10862	10863	24262	24262					0.058341572059816826
KPLRRNNSY	9	Unmodified	_KPLRRNNSY_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1;ENST00000490674.1_1_2:113416785-113418150:+|nuORF	ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.9013061523438	2	574.320171	1146.62579	0.35722	0.00020516	-0.083368	-4.788E-05	0.27385	0.00015728	574.3201114566283	32.726	0.83374	32.782	32.421	33.255	0.055309					44	29	2	0	0	0	0.25879	1	6201	6201		4.756	4.756	1	287780			19199	4568	10862	10863	24263	24263					0.058341572059816826
KPLRRNNSY	9	Unmodified	_KPLRRNNSY_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1;ENST00000490674.1_1_2:113416785-113418150:+|nuORF	ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.9009399414062	2	574.320171	1146.62579	0.21167	0.00012157	0.1367	7.8511E-05	0.34837	0.00020008	574.3200763969221	32.796	0.8469	32.851	32.469	33.316	0.054375					47	30	2	0	0	0	0.25879	1	6205	6205		4.756	0.81161	1	179410			19200	4568	10862	10863	24264	24264					0.058341572059816826
KPLSHRNSL	9	Unmodified	_KPLSHRNSL_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3041381835938	2	526.30399	1050.59343	0.19774	0.00010407	-0.53593	-0.00028206	-0.33819	-0.00017799	526.3038571429162	14.27	0.59888	14.27	13.992	14.591	0					34	20	2	0	0	0	0.29124	1	661	661		10.151	1.4052	1	171950			19201	1004	10863	10864	24265	24265					0.07015369802979876
KPLSHRNSL	9	Unmodified	_KPLSHRNSL_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3040161132812	2	526.30399	1050.59343	0.17145	9.0237E-05	0.0096073	5.0564E-06	0.18106	9.5293E-05	526.3038430214896	14.393	0.6918	14.327	14.037	14.728	-0.066068					48	24	3	0	0	0	0.28225	2	693	693;725		11.495	5.2889	1	139880			19202	1004	10863	10864	24266;24267	24266					0.07015369802979876
KPLSHRNSL	9	Unmodified	_KPLSHRNSL_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	526.30399	1050.59343	0.1486	7.8207E-05	-0.053696	-2.8261E-05	0.0949	4.9946E-05	526.3039322708441	14.359	0.63247	14.255	14.079	14.711	-0.10466	-0.029276	3.9234E-05	NaN	11.495	38	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170900			19203	1004	10863	10864							0.07015369802979876
KPLSITVRT	9	Unmodified	_KPLSITVRT_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2579650878906	2	507.818941	1013.62333	0.2889	0.00014671	0.25536	0.00012968	0.54426	0.00027638	507.81922776710564	31.637	0.44526	31.678	31.419	31.864	0.040991					22	15	2	0	0	0	0.21538	1	5931	5931		26.268	1.2772	1	343230			19204	3225	10864	10865	24268	24268					0.11706308748307492
KPLSRVTSL	9	Unmodified	_KPLSRVTSL_					0	0	0		nc|ENSG00000163947|Q9NR81-3|ARHGEF3;ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3;ARHGEF3|p.Q132Sfs*11|1|0.04|ENSG00000163947|chr3:56753548-56753549|-/CAGGCGATCTTTGA|frameshift_variant	nc|ENSG00000163947|Q9NR81-3|ARHGEF3	nc|ENSG00000163947|Q9NR81-3|ARHGEF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8240966796875	2	500.811116	999.60768	0.26224	0.00013133	0.19701	9.8664E-05	0.45925	0.00023	500.81118957511205	28.598	0.64637	28.598	28.389	29.035	0					37	22	2	0	0	0	0.32371	1	4974	4974		5.2969	0	1	297590			19205	12801	10865	10866	24269	24269					0.10786022231286552
KPLSRVTSL	9	Unmodified	_KPLSRVTSL_					0	0	0		nc|ENSG00000163947|Q9NR81-3|ARHGEF3;ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3;ARHGEF3|p.Q132Sfs*11|1|0.04|ENSG00000163947|chr3:56753548-56753549|-/CAGGCGATCTTTGA|frameshift_variant	nc|ENSG00000163947|Q9NR81-3|ARHGEF3	nc|ENSG00000163947|Q9NR81-3|ARHGEF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8108825683594	2	500.811116	999.60768	0.2324	0.00011639	0.14947	7.4854E-05	0.38186	0.00019124	500.81121853032363	28.638	0.56853	28.634	28.359	28.928	-0.0042572					33	19	2	0	0	0	0.22215	2	5011	4983;5011		20.415	0	1	305700			19206	12801	10865	10866	24270;24271	24271					0.10786022231286552
KPLSRVTSL	9	Unmodified	_KPLSRVTSL_					0	0	0		nc|ENSG00000163947|Q9NR81-3|ARHGEF3;ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3;ARHGEF3|p.Q132Sfs*11|1|0.04|ENSG00000163947|chr3:56753548-56753549|-/CAGGCGATCTTTGA|frameshift_variant	nc|ENSG00000163947|Q9NR81-3|ARHGEF3	nc|ENSG00000163947|Q9NR81-3|ARHGEF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.82427978515625	2	500.811116	999.60768	0.11364	5.6914E-05	0.57618	0.00028856	0.68983	0.00034547	500.8115011128924	28.628	0.56106	28.628	28.41	28.971	0.0004673					33	19	2	0	0	0	0.32371	1	4984	4984		5.2969	0	1	325590			19207	12801	10865	10866	24272	24272					0.10786022231286552
KPLTILPR	8	Unmodified	_KPLTILPR_					0	0	0			REV__chr4:10540604-10542022|210|21.76|0.8|4.76|-|1|CLNK,CLNK|1	REV__chr4:10540604-10542022|210|21.76|0.8|4.76|-|1|CLNK,CLNK|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.97113037109375	2	469.313295	936.612037	-0.016407	-7.7E-06	0.64557	0.00030297	0.62916	0.00029527	469.3138565614614	43.931	0.43529	43.931	43.741	44.176	0					22	15	2	0	0	0	0.32099	1	9659	9659		19.257	1.1106	1	191110	+		19208	13194	10866	10867	24273	24273					0.14119531444850963
KPLTILPR	8	Unmodified	_KPLTILPR_					0	0	0			REV__chr4:10540604-10542022|210|21.76|0.8|4.76|-|1|CLNK,CLNK|1	REV__chr4:10540604-10542022|210|21.76|0.8|4.76|-|1|CLNK,CLNK|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.97125244140625	2	469.313295	936.612037	0.11601	5.4446E-05	0.5174	0.00024282	0.63341	0.00029727	469.31364786753085	43.816	0.444	43.893	43.684	44.128	0.077515					26	16	2	0	0	0	0.34117	1	9593	9593		9.3831	0.63772	1	211020	+		19209	13194	10866	10867	24274	24274					0.14119531444850963
KPLTILPR	8	Unmodified	_KPLTILPR_					0	0	0			REV__chr4:10540604-10542022|210|21.76|0.8|4.76|-|1|CLNK,CLNK|1	REV__chr4:10540604-10542022|210|21.76|0.8|4.76|-|1|CLNK,CLNK|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.97119140625	2	469.313295	936.612037	0.24836	0.00011656	0.32883	0.00015433	0.57719	0.00027088	469.31351368563196	43.785	0.44716	43.869	43.684	44.131	0.083992					19	16	2	0	0	0	0.32099	1	9588	9588		19.257	1.1106	1	181790	+		19210	13194	10866	10867	24275	24275					0.14119531444850963
KPLTLRQL	8	Unmodified	_KPLTLRQL_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.816162109375	2	484.816202	967.617851	0.12069	5.8512E-05	0.1789	8.6733E-05	0.29959	0.00014524	484.81622063837807	26.478	0.9057	26.478	26.215	27.121	0					66	31	3	0	0	0	0.45023	1	4443	4443		5.7319	0	1	393150			19211	894	10867	10868	24276	24276					0.13274629956515582
KPLTVSSYCI	10	Unmodified	_KPLTVSSYCI_					0	0	0			REV__nc|ENSG00000251608|P0DN82|OR12D1	REV__nc|ENSG00000251608|P0DN82|OR12D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7958984375	2	555.796817	1109.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.84	1	115.82	115.32	116.32	-0.020988								0	0	0	0.38187	1	30027	30027		1.3295	0.25807	1		+		19212	23217	10868	10869	24277	24277					0.028675365398157737
KPLYSSCLSV	10	Unmodified	_KPLYSSCLSV_					0	0	0		ENSG00000144468|ENST00000392062|RHBDD1	ENSG00000144468|ENST00000392062|RHBDD1	ENSG00000144468|ENST00000392062|RHBDD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7710571289062	2	548.788992	1095.56343	0.69151	0.00037949	-0.97597	-0.0005356	-0.28446	-0.00015611	548.7882453369006	20.751	0.30454	20.698	20.613	20.917	-0.05291					15	10	2	0	0	0	0.38773	1	2648	2648		5.7319	0.43497	1	47198			19213	4588	10869	10870	24278	24278					0.019472500227720957
KPLYSSCLSV	10	Unmodified	_KPLYSSCLSV_					0	0	0		ENSG00000144468|ENST00000392062|RHBDD1	ENSG00000144468|ENST00000392062|RHBDD1	ENSG00000144468|ENST00000392062|RHBDD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	548.788992	1095.56343	0.69151	0.00037949	-0.97597	-0.0005356	-0.28446	-0.00015611	548.7882453369006	20.751	0.30454	20.698	20.613	20.917	-0.05291	-0.0033701	-0.00072468	NaN	5.7319	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47198			19214	4588	10869	10870							0.019472500227720957
KPMEVFQSSSL	11	Oxidation (M)	_KPM(Oxidation (M))EVFQSSSL_		KPM(1)EVFQSSSL		KPM(68)EVFQSSSL	0	0	1		ENST00000393766.6_1_4:166258954-166258996:+|nuORF	ENST00000393766.6_1_4:166258954-166258996:+|nuORF	ENST00000393766.6_1_4:166258954-166258996:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.8132934570312	2	634.813196	1267.61184	0.22377	0.00014205	-0.026864	-1.7053E-05	0.1969	0.000125	634.8130093478655	41.486	0.32936	41.486	41.225	41.555	0					18	11	2	0	0	0	0.010561	1	8925	8925		68.484	28.245	1	1167600			19215	10058	10870	10871	24279	24279		936			-0.011263011279652346
KPMEVFQSSSL	11	Oxidation (M)	_KPM(Oxidation (M))EVFQSSSL_		KPM(1)EVFQSSSL		KPM(54)EVFQSSSL	0	0	1		ENST00000393766.6_1_4:166258954-166258996:+|nuORF	ENST00000393766.6_1_4:166258954-166258996:+|nuORF	ENST00000393766.6_1_4:166258954-166258996:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.8136596679688	2	634.813196	1267.61184	0.37422	0.00023756	-0.14929	-9.4773E-05	0.22493	0.00014279	634.8131687723044	41.196	0.34998	41.286	41.106	41.456	0.090252					31	12	3	0	0	0	0.048078	1	8890	8890		53.798	20.353	1	526950			19216	10058	10870	10871	24280	24280		936			-0.011263011279652346
KPMEVFQSSSL	11	Oxidation (M)	_KPM(Oxidation (M))EVFQSSSL_		KPM(1)EVFQSSSL		KPM(68)EVFQSSSL	0	0	1		ENST00000393766.6_1_4:166258954-166258996:+|nuORF	ENST00000393766.6_1_4:166258954-166258996:+|nuORF	ENST00000393766.6_1_4:166258954-166258996:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.8133544921875	2	634.813196	1267.61184	0.41272	0.000262	-0.15575	-9.8875E-05	0.25696	0.00016312	634.8131059614077	41.132	0.40662	41.229	41.015	41.422	0.096626					32	14	3	0	0	0	0.010584	1	8844	8844		68.436	34.991	1	530130			19217	10058	10870	10871	24281	24281		936			-0.011263011279652346
KPNANRIAL	9	Unmodified	_KPNANRIAL_					0	0	0		ENST00000556438.6_1_14:55604729-55611986:+|nuORF;ENSG00000131981|ENST00000254301|LGALS3	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.8012390136719	2	498.801083	995.587613	0.26522	0.00013229	-0.31703	-0.00015814	-0.05182	-2.5848E-05	498.80115150312076	23.981	1.5212	23.981	23.542	25.064	0					194	52	6	0	0	0	0.0011817	6	3578	3578;3621;3662;3709;3753;3803		120.45	69.595	1	5859500			19218	3602	10871	10872	24282;24283;24284;24285;24286;24287	24282					0.08964271291313253
KPNANRIAL	9	Unmodified	_KPNANRIAL_					0	0	0		ENST00000556438.6_1_14:55604729-55611986:+|nuORF;ENSG00000131981|ENST00000254301|LGALS3	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.80120849609375	2	498.801083	995.587613	0.34665	0.00017291	-0.35075	-0.00017495	-0.0040996	-2.0449E-06	498.80114221650166	24.102	2.2077	24.03	23.368	25.575	-0.072559					233	76	6	0	0	0	0.0022761	6	3609	3609;3655;3702;3748;3790;3866		108	57.142	1	5440000			19219	3602	10871	10872	24288;24289;24290;24291;24292;24293	24288					0.08964271291313253
KPNANRIAL	9	Unmodified	_KPNANRIAL_					0	0	0		ENST00000556438.6_1_14:55604729-55611986:+|nuORF;ENSG00000131981|ENST00000254301|LGALS3	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.8014831542969	2	498.801083	995.587613	0.32316	0.00016119	-0.25173	-0.00012556	0.071426	3.5627E-05	498.80116062076354	24.097	1.6602	24.058	23.651	25.312	-0.038927					145	57	3	0	0	0	0.00056175	5	3657	3614;3657;3700;3743;3789		128.37	77.51	1	5275900			19220	3602	10871	10872	24294;24295;24296;24297;24298	24295					0.08964271291313253
KPNANRIALDF	11	Unmodified	_KPNANRIALDF_					0	0	0		ENST00000556438.6_1_14:55604729-55611986:+|nuORF;ENSG00000131981|ENST00000254301|LGALS3	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.2348937988281	3	420.234933	1257.68297	-0.072074	-3.0288E-05	0.074759	3.1416E-05	0.0026852	1.1284E-06	420.23494666390724	43.564	1.0472	43.564	43.233	44.28	0					117	38	4	0	0	0	0.012355	2	9582	9537;9582		64.688	37.599	1	5977400			19221	3602	10872	10873	24299;24300	24300					0.0644357969167686
KPNANRIALDF	11	Unmodified	_KPNANRIALDF_					0	0	0		ENST00000556438.6_1_14:55604729-55611986:+|nuORF;ENSG00000131981|ENST00000254301|LGALS3	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.848876953125	2	629.848761	1257.68297	0.32807	0.00020663	0.10492	6.6087E-05	0.43299	0.00027272	629.8487764575964	43.565	0.86226	43.565	43.281	44.143	0					83	31	4	0	0	0	2.3775E-05	3	9552	9552;9598;9645		111.31	75.697	1	2681000			19222	3602	10872	10873	24301;24302;24303	24301					0.0644357969167686
KPNANRIALDF	11	Unmodified	_KPNANRIALDF_					0	0	0		ENST00000556438.6_1_14:55604729-55611986:+|nuORF;ENSG00000131981|ENST00000254301|LGALS3	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.848876953125	2	629.848761	1257.68297	0.37141	0.00023393	-0.003325	-2.0943E-06	0.36809	0.00023184	629.8487287039636	43.233	0.84257	43.31	43.023	43.865	0.077515					84	30	4	0	0	0	0.0005993	3	9501	9454;9501;9554		121.5	85.891	1	2708000			19223	3602	10872	10873	24304;24305;24306	24305					0.0644357969167686
KPNANRIALDF	11	Unmodified	_KPNANRIALDF_					0	0	0		ENST00000556438.6_1_14:55604729-55611986:+|nuORF;ENSG00000131981|ENST00000254301|LGALS3	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.23492431640625	3	420.234933	1257.68297	0.23256	9.773E-05	-0.30283	-0.00012726	-0.070266	-2.9528E-05	420.2348191153029	43.209	1.1049	43.287	42.943	44.048	0.077515					120	40	5	0	0	0	0.010561	1	9486	9486		68.484	41.396	1	6356100			19224	3602	10872	10873	24307	24307					0.0644357969167686
KPNANRIALDF	11	Unmodified	_KPNANRIALDF_					0	0	0		ENST00000556438.6_1_14:55604729-55611986:+|nuORF;ENSG00000131981|ENST00000254301|LGALS3	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.8488159179688	2	629.848761	1257.68297	0.31007	0.00019529	0.10807	6.8067E-05	0.41813	0.00026336	629.8488028148031	43.222	0.88403	43.306	43.007	43.891	0.083992					93	32	4	0	0	0	2.3775E-05	3	9436	9436;9485;9540		132.13	89.822	1	2625400			19225	3602	10872	10873	24308;24309;24310	24308					0.0644357969167686
KPNANRIALDF	11	Unmodified	_KPNANRIALDF_					0	0	0		ENST00000556438.6_1_14:55604729-55611986:+|nuORF;ENSG00000131981|ENST00000254301|LGALS3	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENST00000556438.6_1_14:55604729-55611986:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2348937988281	3	420.234933	1257.68297	0.06805	2.8597E-05	-0.12422	-5.2204E-05	-0.056175	-2.3607E-05	420.2348750067458	43.211	1.1284	43.295	42.92	44.049	0.083996					133	41	5	0	0	0	0.035355	2	9468	9468;9520		57.477	25.253	1	6291900			19226	3602	10872	10873	24311;24312	24311					0.0644357969167686
KPNASVALHK	10	Unmodified	_KPNASVALHK_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8135986328125	2	532.81419	1063.61383	0.30633	0.00016322	-0.50856	-0.00027097	-0.20224	-0.00010775	532.8139514224674	17.91	0.55068	17.849	17.618	18.169	-0.060429					55	19	4	0	0	0	0.34053	1	1740	1740		14.405	0	1	176300			19227	459	10873	10874	24313	24313					0.08456540462793782
KPNATQEEL	9	Unmodified	_KPNATQEEL_					0	0	0		ENSG00000086061|ENST00000330899|DNAJA1;nc|ENSG00000086061|P31689-2|DNAJA1	ENSG00000086061|ENST00000330899|DNAJA1	ENSG00000086061|ENST00000330899|DNAJA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2654418945312	2	515.264196	1028.51384	0.15947	8.2169E-05	1.406	0.00072446	1.5655	0.00080663	515.2647637211221	21.678	0.63148	21.629	21.373	22.005	-0.049377					40	22	2	0	0	0	0.22215	1	2933	2933		20.415	1.1575	1	176970			19228	1274	10874	10875	24314	24314					0.0007225833833217621
KPNDSRALQL	10	Unmodified	_KPNDSRALQL_					0	0	0		ENSG00000113272|ENST00000231198|THG1L	ENSG00000113272|ENST00000231198|THG1L	ENSG00000113272|ENST00000231198|THG1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.308837890625	2	571.319837	1140.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.445	1	27.433	26.933	27.933	-0.01156								0	0	0	0.34584	1	4656	4656		16.566	2.951	1				19229	2486	10875	10876	24315	24315					0.06043317766284417
KPNKFVKA	8	Unmodified	_KPNKFVKA_					0	0	0			REV__ENSG00000168928|ENST00000303037|CTRB2	REV__ENSG00000168928|ENST00000303037|CTRB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2770080566406	2	466.28982	930.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.798	1	29.811	29.311	30.311	0.013474								0	0	0	0.37183	1	5371	5371		4.756	2.1785	1		+		19230	17489	10876	10877	24316	24316					0.09702671893705883
KPNPDWLHLL	10	Unmodified	_KPNPDWLHLL_					0	0	0			REV__ENSG00000171495|ENST00000399564|MROH2B	REV__ENSG00000171495|ENST00000399564|MROH2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.89813232421875	3	411.564391	1231.67134	-0.18645	-7.6735E-05	-0.46442	-0.00019114	-0.65087	-0.00026787	411.8983237599911	13.91	0.4846	13.806	13.538	14.023	-0.10466					59	16	5	0	0	0	0.31867	1	556	556		7.9454	3.4165	1	177220	+		19231	17643	10877	10878	24317	24317					0.06477382668367682
KPNRERQKL	9	Unmodified	_KPNRERQKL_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.8488159179688	2	584.849096	1167.68364	-0.032199	-1.8831E-05	-0.078006	-4.5622E-05	-0.1102	-6.4453E-05	584.84896398757	12.414	0.42107	12.414	12.303	12.724	0					28	13	3	0	0	0	0.086462	1	120	120		40.239	27.197	1	356740			19232	1468;3087;4931	10878	10879	24318	24318					0.10650419131411581
KPNRERQKL	9	Unmodified	_KPNRERQKL_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.8489379882812	2	584.849096	1167.68364	-0.022009	-1.2872E-05	-0.14016	-8.1973E-05	-0.16217	-9.4845E-05	584.8490054338619	12.434	0.3742	12.337	12.206	12.58	-0.096607					33	12	4	0	0	0	0.18208	1	121	121		26.268	14.628	1	361100			19233	1468;3087;4931	10878	10879	24319	24319					0.10650419131411581
KPNRERQKL	9	Unmodified	_KPNRERQKL_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8491821289062	2	584.849096	1167.68364	-0.1003	-5.8663E-05	0.041123	2.4051E-05	-0.059181	-3.4612E-05	584.8491253295398	12.459	0.38876	12.391	12.281	12.67	-0.06806					30	12	4	0	0	0	0.07944	1	129	129		41.956	20.365	1	358810			19234	1468;3087;4931	10878	10879	24320	24320					0.10650419131411581
KPNRKANK	8	Unmodified	_KPNRKANK_					0	0	0			REV__nc|ENSG00000112029|Q9UKT4-2|FBXO5	REV__nc|ENSG00000112029|Q9UKT4-2|FBXO5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2932434082031	2	478.293425	954.572297	-0.18947	-9.0623E-05	-0.30395	-0.00014538	-0.49342	-0.000236	478.2932583462541	12.206	0.31389	12.206	12.119	12.433	0					15	11	2	0	0	0	0.45307	1	68	68		4.756	0.81161	1	77068	+		19235	14748	10879	10880	24321	24321					0.09319404494124228
KPNRKANK	8	Unmodified	_KPNRKANK_					0	0	0			REV__nc|ENSG00000112029|Q9UKT4-2|FBXO5	REV__nc|ENSG00000112029|Q9UKT4-2|FBXO5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2930908203125	2	478.293425	954.572297	-0.021626	-1.0344E-05	-0.38314	-0.00018325	-0.40476	-0.0001936	478.2930237201672	12.206	0.28711	12.11	12.037	12.324	-0.096606					19	10	3	0	0	0	0.45169	1	63	63		5.2307	0.90143	1	70927	+		19236	14748	10879	10880	24322	24322					0.09319404494124228
KPNRKANK	8	Unmodified	_KPNRKANK_					0	0	0			REV__nc|ENSG00000112029|Q9UKT4-2|FBXO5	REV__nc|ENSG00000112029|Q9UKT4-2|FBXO5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2926330566406	2	478.293425	954.572297	-0.18552	-8.8735E-05	-0.58851	-0.00028148	-0.77403	-0.00037021	478.29266376077567	12.222	0.17481	12.154	12.051	12.226	-0.068059					16	7	3	0	0	0	0.45169	1	58	58		5.2307	0.90143	1	58852	+		19237	14748	10879	10880	24323	24323					0.09319404494124228
KPNSNQVNL	9	Unmodified	_KPNSNQVNL_					0	0	0		nc|ENSG00000023909|P48507-2|GCLM;ENSG00000023909|ENST00000370238|GCLM	nc|ENSG00000023909|P48507-2|GCLM	nc|ENSG00000023909|P48507-2|GCLM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2723083496094	2	507.272355	1012.53016	0.088895	4.5094E-05	-0.027509	-1.3954E-05	0.061386	3.114E-05	507.2722391210185	23.08	1.0469	23.08	22.622	23.669	0					70	36	3	0	0	0	0.21447	1	3384	3384		21.537	2.28	1	413090			19238	528	10880	10881	24324	24324					0.024393842950985345
KPNSNQVNL	9	Unmodified	_KPNSNQVNL_					0	0	0		nc|ENSG00000023909|P48507-2|GCLM;ENSG00000023909|ENST00000370238|GCLM	nc|ENSG00000023909|P48507-2|GCLM	nc|ENSG00000023909|P48507-2|GCLM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.272216796875	2	507.272355	1012.53016	0.09862	5.0027E-05	0.022463	1.1395E-05	0.12108	6.1422E-05	507.27226853532227	23.184	1.0847	23.096	22.628	23.713	-0.087608					83	38	4	0	0	0	0.07944	3	3388	3337;3388;3438		41.956	9.6501	1	436160			19239	528	10880	10881	24325;24326;24327	24326					0.024393842950985345
KPNSNQVNL	9	Unmodified	_KPNSNQVNL_					0	0	0		nc|ENSG00000023909|P48507-2|GCLM;ENSG00000023909|ENST00000370238|GCLM	nc|ENSG00000023909|P48507-2|GCLM	nc|ENSG00000023909|P48507-2|GCLM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2723388671875	2	507.272355	1012.53016	0.23983	0.00012166	-0.20757	-0.0001053	0.032257	1.6363E-05	507.272165132449	23.186	1.1976	23.141	22.616	23.814	-0.044867					88	42	4	0	0	0	0.13748	2	3394	3394;3452		32.786	2.2746	1	447250			19240	528	10880	10881	24328;24329	24328					0.024393842950985345
KPNSNQVNL	9	Unmodified	_KPNSNQVNL_					0	0	0		nc|ENSG00000023909|P48507-2|GCLM;ENSG00000023909|ENST00000370238|GCLM	nc|ENSG00000023909|P48507-2|GCLM	nc|ENSG00000023909|P48507-2|GCLM	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.272355	1012.53016	0.088895	4.5094E-05	-0.027509	-1.3954E-05	0.061386	3.114E-05	507.2722391210185	23.08	1.0469	23.08	22.622	23.669	0	-0.02555	2.5924E-05	NaN	41.956	70	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413090			19241	528	10880	10881							0.024393842950985345
KPNTSSKRSSL	11	Unmodified	_KPNTSSKRSSL_					0	0	0		ENSG00000151665|ENST00000281382|PIGF;ENST00000495933.1_1_2:46842057-46842303:-|nuORF;nc|ENSG00000151665|Q07326-2|PIGF	ENSG00000151665|ENST00000281382|PIGF	ENSG00000151665|ENST00000281382|PIGF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.8360595703125	2	602.835851	1203.65715	0.13271	8.0001E-05	0.022566	1.3603E-05	0.15527	9.3604E-05	602.8358607436616	12.652	0.29181	12.652	12.555	12.847	0					23	9	3	0	0	0	0.43508	1	195	195		6.6304	1.3335	1	78220			19242	4973	10881	10882	24330	24330					0.06346685449420875
KPNTSSKRSSL	11	Unmodified	_KPNTSSKRSSL_					0	0	0		ENSG00000151665|ENST00000281382|PIGF;ENST00000495933.1_1_2:46842057-46842303:-|nuORF;nc|ENSG00000151665|Q07326-2|PIGF	ENSG00000151665|ENST00000281382|PIGF	ENSG00000151665|ENST00000281382|PIGF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8361206054688	2	602.835851	1203.65715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.675	1	12.576	12.076	13.076	-0.099291								0	0	0	0.33786	1	199	199		10.899	6.0019	1				19243	4973	10881	10882	24331	24331					0.06346685449420875
KPNTSSKRSSL	11	Unmodified	_KPNTSSKRSSL_					0	0	0		ENSG00000151665|ENST00000281382|PIGF;ENST00000495933.1_1_2:46842057-46842303:-|nuORF;nc|ENSG00000151665|Q07326-2|PIGF	ENSG00000151665|ENST00000281382|PIGF	ENSG00000151665|ENST00000281382|PIGF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8359375	2	602.835851	1203.65715	-0.0772	-4.6539E-05	0.49233	0.00029679	0.41513	0.00025026	602.8359739426437	12.668	0.27117	12.601	12.52	12.791	-0.067495					19	8	3	0	0	0	0.41288	1	207	207		9.544	5.2147	1	90412			19244	4973	10881	10882	24332	24332					0.06346685449420875
KPNTSSKRSSL	11	Unmodified	_KPNTSSKRSSL_					0	0	0		ENSG00000151665|ENST00000281382|PIGF;ENST00000495933.1_1_2:46842057-46842303:-|nuORF;nc|ENSG00000151665|Q07326-2|PIGF	ENSG00000151665|ENST00000281382|PIGF	ENSG00000151665|ENST00000281382|PIGF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	602.835851	1203.65715	0.13271	8.0001E-05	0.022566	1.3603E-05	0.15527	9.3604E-05	602.8358607436616	12.652	0.29181	12.652	12.555	12.847	0	0.025646	-0.00018521	NaN	9.544	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78220			19245	4973	10881	10882							0.06346685449420875
KPNYKKLEL	9	Unmodified	_KPNYKKLEL_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.83984375	2	566.839874	1131.66519	0.18299	0.00010372	-0.28258	-0.00016018	-0.09959	-5.6452E-05	566.839579015834	26.955	0.94199	26.955	26.673	27.615	0					92	32	4	0	0	0	0.043711	1	4558	4558		55.235	3.8194	1	761080			19246	889	10882	10883	24333	24333					0.10462864436840391
KPNYKKLEL	9	Unmodified	_KPNYKKLEL_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.8397216796875	2	566.839874	1131.66519	0.27965	0.00015852	-0.43961	-0.00024919	-0.15995	-9.0668E-05	566.8394649201415	26.989	1.0473	26.968	26.62	27.667	-0.021412					95	36	4	0	0	0	0.0023895	2	4518	4518;4570		107.1	31.339	1	848310			19247	889	10882	10883	24334;24335	24334					0.10462864436840391
KPNYKKLEL	9	Unmodified	_KPNYKKLEL_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.8397827148438	2	566.839874	1131.66519	0.2338	0.00013253	-0.3504	-0.00019862	-0.1166	-6.6095E-05	566.8395334689649	27.049	0.96412	27.037	26.711	27.675	-0.01156					88	33	4	0	0	0	0.0041491	2	4529	4529;4578		93.166	20.198	1	938030			19248	889	10882	10883	24336;24337	24336					0.10462864436840391
KPPDRPSSKSK	11	Unmodified	_KPPDRPSSKSK_					0	0	0		ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP;ENST00000538548.5_1_12:132198725-132271134:+|nuORF	ENSG00000061936|ENST00000261674|SFSWAP	ENSG00000061936|ENST00000261674|SFSWAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.55255126953125	3	409.566571	1225.67788	-0.1563	-6.4014E-05	1.6694	0.00068371	1.5131	0.0006197	409.5676082806689	22.15	0.25629	22.15	21.996	22.252	0					11	8	2	0	0	0	0.45202	1	3046	3046		4.4062	2.4998	1	29601			19249	762	10883	10884	24338	24338					0.07407275829086757
KPPENQKK	8	Unmodified	_KPPENQKK_					0	0	0		ENSG00000173389|ENST00000310914|IQCF1	ENSG00000173389|ENST00000310914|IQCF1	ENSG00000173389|ENST00000310914|IQCF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7798767089844	2	484.779816	967.545079	0.031813	1.5422E-05	0.78678	0.00038142	0.8186	0.00039684	484.7799261818343	16.442	1.2216	16.328	15.718	16.94	-0.11434					73	42	2	0	0	0	0.3408	1	1324	1324		14.838	0	1	111250			19250	6718	10884	10885	24339	24339					0.06000876163091107
KPPERARAGPG	11	Unmodified	_KPPERARAGPG_					0	0	0			REV__ENST00000530646.1_1_17:72199871-72200367:+|nuORF	REV__ENST00000530646.1_1_17:72199871-72200367:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8070068359375	2	568.320171	1134.62579	0.032951	1.8727E-05	0.39917	0.00022686	0.43212	0.00024558	568.3205789033349	13.228	0.20909	13.129	12.98	13.189	-0.099291					11	6	2	0	0	0	0.33324	1	330	330		1.1933	0	1	21040	+		19251	22010	10885	10886	24340	24340					0.06386157205974996
KPPERARAGPG	11	Unmodified	_KPPERARAGPG_					0	0	0			REV__ENST00000530646.1_1_17:72199871-72200367:+|nuORF	REV__ENST00000530646.1_1_17:72199871-72200367:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	568.320171	1134.62579	-0.087655	-4.9816E-05	0.23949	0.00013611	0.15183	8.6289E-05	568.3203377765509	13.105	0.22445	13.105	13.003	13.227	0	-0.0018594	-0.00014042	NaN	1.1933	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36042	+		19252	22010	10885	10886							0.06386157205974996
KPPERARAGPG	11	Unmodified	_KPPERARAGPG_					0	0	0			REV__ENST00000530646.1_1_17:72199871-72200367:+|nuORF	REV__ENST00000530646.1_1_17:72199871-72200367:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	568.320171	1134.62579	-0.14979	-8.513E-05	0.4242	0.00024108	0.27441	0.00015595	568.3203759800538	13.154	0.19557	13.087	12.993	13.189	-0.067496	-0.020098	6.9526E-05	NaN	1.1933	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27856	+		19253	22010	10885	10886							0.06386157205974996
KPPGRGGKHS	10	Unmodified	_KPPGRGGKHS_					0	0	0		nc|ENSG00000106665|Q9UDT6-2|CLIP2;ENSG00000106665|ENST00000223398|CLIP2	nc|ENSG00000106665|Q9UDT6-2|CLIP2	nc|ENSG00000106665|Q9UDT6-2|CLIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.7884216308594	2	510.788507	1019.56246	-0.017828	-9.1063E-06	1.6817	0.00085897	1.6638	0.00084987	510.78843015668406	12.42	0.55433	12.323	12.148	12.703	-0.096607					44	18	4	0	0	0	0.38773	1	130	130		5.7319	0.83484	1	103480			19254	2093	10886	10887	24341	24341					0.05346216488760547
KPPHSRAL	8	Unmodified	_KPPHSRAL_					0	0	0		ENST00000398712.6_1_8:145154840-145157977:-|nuORF	ENST00000398712.6_1_8:145154840-145157977:-|nuORF	ENST00000398712.6_1_8:145154840-145157977:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.743896484375	2	453.269419	904.524284	-0.17248	-7.818E-05	0.60041	0.00027215	0.42793	0.00019397	453.2697711586229	28.304	0.51457	28.304	27.981	28.496	0					24	17	2	0	0	0	0.34092	1	4836	4836		8.5933	0	1	130940			19255	10170	10887	10888	24342	24342					0.0682033057408944
KPPKDIDLKS	10	Unmodified	_KPPKDIDLKS_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.3023071289062	2	570.834788	1139.65502	-0.10272	-5.8635E-05	0.24737	0.00014121	0.14465	8.2571E-05	570.8348529596745	25.423	0.50434	25.392	25.209	25.713	-0.031408					27	17	2	0	0	0	0.31889	1	4005	4005		6.2058	1.3088	1	169860			19256	2801	10888	10889	24343	24343					0.09078256711586619
KPPKEKPK	8	Unmodified	_KPPKEKPK_					0	0	0			REV__ENSG00000106624|ENST00000223357|AEBP1	REV__ENSG00000106624|ENST00000223357|AEBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.29974365234375	2	476.302927	950.591301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.17	1	12.102	11.602	12.602	-0.06806								0	0	0	0.37277	1	46	46		4.3292	0	1		+		19257	14529	10889	10890	24344	24344					0.11402941065182404
KPPMKSAQQ	9	Unmodified	_KPPMKSAQQ_					0	0	0			REV__nc|ENSG00000102309|Q9Y237-3|PIN4	REV__nc|ENSG00000102309|Q9Y237-3|PIN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7735900878906	2	507.773677	1013.5328	0.14615	7.4212E-05	-0.35839	-0.00018198	-0.21224	-0.00010777	507.77354724927557	23.555	0.46121	23.555	23.308	23.769	0					42	15	3	0	0	0	0.31417	1	3524	3524		6.7232	6.7232	1	230450	+		19258	22918	10890	10891	24345	24345					0.026575164283940467
KPPMKSAQQ	9	Unmodified	_KPPMKSAQQ_					0	0	0			REV__nc|ENSG00000102309|Q9Y237-3|PIN4	REV__nc|ENSG00000102309|Q9Y237-3|PIN4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.773677	1013.5328	0.14615	7.4212E-05	-0.35839	-0.00018198	-0.21224	-0.00010777	507.77354724927557	23.555	0.46121	23.555	23.308	23.769	0	-0.031748	-4.28E-05	NaN	6.7232	42	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230450	+		19259	22918	10890	10891							0.026575164283940467
KPPMKSAQQ	9	Unmodified	_KPPMKSAQQ_					0	0	0			REV__nc|ENSG00000102309|Q9Y237-3|PIN4	REV__nc|ENSG00000102309|Q9Y237-3|PIN4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.773677	1013.5328	0.34217	0.00017374	-0.32724	-0.00016616	0.014925	7.5787E-06	507.7734737265615	23.649	0.56452	23.61	23.283	23.848	-0.038927	0.023933	-1.1169E-05	NaN	6.7232	50	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263930	+		19260	22918	10890	10891							0.026575164283940467
KPPRTQKE	8	Unmodified	_KPPRTQKE_					0	0	0		ENSG00000096717|ENST00000212015|SIRT1;SIRT1|p.D663Rfs*2|1|0.42|ENSG00000096717|chr10:67916333-67916334|-/A|frameshift_variant	ENSG00000096717|ENST00000212015|SIRT1	ENSG00000096717|ENST00000212015|SIRT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.28515625	2	492.285266	982.555979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.309	1	18.192	17.692	18.692	-0.11739								0	0	0	0.37183	1	1895	1895		4.756	0	1				19261	1469	10891	10892	24346	24346					0.06400278537375925
KPPTLSLL	8	Unmodified	_KPPTLSLL_					0	0	0			REV__nc|ENSG00000147162|O15294-2|OGT	REV__nc|ENSG00000147162|O15294-2|OGT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7787170410156	2	434.778754	867.542954	0.00092753	4.0327E-07	-0.041445	-1.8019E-05	-0.040517	-1.7616E-05	434.7786698779474	74.776	0.84126	74.828	74.612	75.454	0.052368					64	30	3	0	0	0	0.32038	1	19214	19214		28.487	0	1	1247600	+		19262	23023	10892	10893	24347	24347					0.10388447425293634
KPPVRDPK	8	Unmodified	_KPPVRDPK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2464904785156	2	468.784902	935.55525	0.17131	8.031E-05	-0.34577	-0.00016209	-0.17445	-8.1781E-05	468.7844664690656	21.707	0.41665	21.607	21.443	21.86	-0.10034					19	14	2	0	0	0	0.34092	1	2897	2897		13.508	0	1	44846			19263	6752	10893	10894	24348	24348					0.08489483888320137
KPPYEKPA	8	Unmodified	_KPPYEKPA_					0	0	0			REV__ENSG00000262814|ENST00000333676|MRPL12	REV__ENSG00000262814|ENST00000333676|MRPL12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2637939453125	2	465.258185	928.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.132	1	19.076	18.576	19.576	-0.055693								0	0	0	0.35466	1	2140	2140		12.532	0.89125	1		+		19264	19291	10894	10895	24349	24349					0.034706863857991266
KPQDYKKRL	9	Unmodified	_KPQDYKKRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000485265.1_1_3:41277322-41278230:+|nuORF;ENST00000465552.1_1_3:41277978-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1;ENST00000465552.1_1_3:41277978-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3485107421875	2	588.348397	1174.68224	0.066088	3.8883E-05	-0.020186	-1.1876E-05	0.045902	2.7006E-05	588.3484158501469	14.645	0.4516	14.645	14.448	14.9	0					29	15	3	0	0	0	0.33719	1	822	822		3.2813	1.7994	1	78604			19265	6239;10799	10895	10896	24350	24350					0.10188785042646487
KPQDYKKRL	9	Unmodified	_KPQDYKKRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000485265.1_1_3:41277322-41278230:+|nuORF;ENST00000465552.1_1_3:41277978-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1;ENST00000465552.1_1_3:41277978-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.34814453125	2	588.348397	1174.68224	0.05561	3.2718E-05	0.33434	0.00019671	0.38995	0.00022943	588.3485562225072	14.857	0.308	14.793	14.618	14.926	-0.064414					21	10	3	0	0	0	0.23612	1	853	853		18.373	6.8784	1	59650			19266	6239;10799	10895	10896	24351	24351					0.10188785042646487
KPQDYKKRL	9	Unmodified	_KPQDYKKRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000485265.1_1_3:41277322-41278230:+|nuORF;ENST00000465552.1_1_3:41277978-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1;ENST00000465552.1_1_3:41277978-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	588.348397	1174.68224	0.069563	4.0927E-05	0.3741	0.0002201	0.44367	0.00026103	588.3485020913603	14.816	0.28716	14.706	14.56	14.847	-0.10981	-0.0086632	0.00024079	NaN	18.373	24	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82546			19267	6239;10799	10895	10896							0.10188785042646487
KPQEAPKELVI	11	Unmodified	_KPQEAPKELVI_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.57830810546875	3	417.915089	1250.72344	-0.25806	-0.00010785	-1.8141	-0.00075816	-2.0722	-0.00086601	417.9140716162562	23.163	0.57347	23.163	22.875	23.448	0					27	19	2	0	0	0	0.33274	1	3408	3408		3.5927	0.96144	1	179270			19268	883	10896	10897	24352	24352					0.1081050129146206
KPQGQRTSL	9	Unmodified	_KPQGQRTSL_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1;ENST00000513818.1_1_3:133337003-133343000:-|nuORF	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7884521484375	2	507.788173	1013.56179	-0.0031228	-1.5857E-06	0.33238	0.00016878	0.32926	0.00016719	507.78831071053975	13.884	0.62005	13.884	13.687	14.307	0					51	21	4	0	0	0	0.088443	1	549	549		39.95	3.8227	1	454850			19269	5729	10897	10898	24353	24353					0.05555377049051913
KPQGQRTSL	9	Unmodified	_KPQGQRTSL_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1;ENST00000513818.1_1_3:133337003-133343000:-|nuORF	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7884521484375	2	507.788173	1013.56179	-0.076773	-3.8984E-05	0.49015	0.00024889	0.41337	0.00020991	507.78837276343586	13.965	0.55368	13.861	13.685	14.238	-0.10466					46	19	4	0	0	0	0.088443	2	582	582;692		39.95	3.8227	1	493790			19270	5729	10897	10898	24354;24355	24354					0.05555377049051913
KPQGQRTSL	9	Unmodified	_KPQGQRTSL_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1;ENST00000513818.1_1_3:133337003-133343000:-|nuORF	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.7884826660156	2	507.788173	1013.56179	-0.068389	-3.4727E-05	0.26615	0.00013515	0.19776	0.00010042	507.7883458069628	13.961	0.66116	13.895	13.687	14.349	-0.066067					51	22	4	0	0	0	0.03069	1	575	575		60.074	3.8969	1	591380			19271	5729	10897	10898	24356	24356					0.05555377049051913
KPQIPKLQP	9	Unmodified	_KPQIPKLQP_					0	0	0			REV__ZNF609|p.P708A|1|0.16|ENSG00000180357|chr15:64674976-64674976|C/G|missense_variant	REV__ZNF609|p.P708A|1|0.16|ENSG00000180357|chr15:64674976-64674976|C/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.303466796875	2	524.829309	1047.64407	0.75502	0.00039626	-4.0023	-0.0021005	-3.2473	-0.0017043	525.3268224228852	40.561	0.27378	40.561	40.36	40.634	0					12	9	2	0	0	0	0.2451	1	8660	8660		10.824	0.75	1	108920	+		19272	18108	10898	10899	24357	24357					0.12214899127980061
KPQLLLLAL	9	Unmodified	_KPQLLLLAL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;ENST00000494950.5_2_3:145842007-145878776:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.8445129394531	2	504.844428	1007.6743	0.54409	0.00027468	-2.7676	-0.0013972	-2.2235	-0.0011225	504.84426159299676	74.386	1.5364	74.386	73.998	75.534	0					139	53	5	0	0	0	0.0085732	3	19078	19033;19078;19130		81.613	35.592	1	6508000			19273	5048	10899	10900	24358;24359;24360	24359					0.17077257793164335
KPQLLLLAL	9	Unmodified	_KPQLLLLAL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;ENST00000494950.5_2_3:145842007-145878776:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.8446044921875	2	504.844428	1007.6743	0.26756	0.00013508	-2.6321	-0.0013288	-2.3645	-0.0011937	504.84440181170794	74.318	1.3715	74.371	73.977	75.349	0.052361					146	48	5	0	0	0	0.0041925	4	19083	19006;19032;19083;19129		92.822	38.049	1	6708500			19274	5048	10899	10900	24361;24362;24363;24364	24363					0.17077257793164335
KPQLLLLAL	9	Unmodified	_KPQLLLLAL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;ENST00000494950.5_2_3:145842007-145878776:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.84454345703125	2	504.844428	1007.6743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.464	1	74.434	73.934	74.934	-0.030655								0	0	0	0.001781	1	19069	19069		92.822	38.049	1				19275	5048	10899	10900	24365	24365					0.17077257793164335
KPQLLLLAL	9	Unmodified	_KPQLLLLAL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;ENST00000494950.5_2_3:145842007-145878776:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.84466552734375	2	504.844428	1007.6743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.607	1	74.576	74.076	75.076	-0.030655								0	0	0	0.0091895	1	19113	19113		81.613	30.758	1				19276	5048	10899	10900	24366	24366					0.17077257793164335
KPQLLLLAL	9	Unmodified	_KPQLLLLAL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;ENST00000494950.5_2_3:145842007-145878776:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.84454345703125	2	504.844428	1007.6743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.752	1	74.72	74.22	75.22	-0.031487								0	0	0	0.10131	1	19157	19157		46.021	15.384	1				19277	5048	10899	10900	24367	24367					0.17077257793164335
KPQPEGLVT	9	Unmodified	_KPQPEGLVT_					0	0	0		ENST00000463846.5_1_1:44461379-44461848:+|nuORF	ENST00000463846.5_1_1:44461379-44461848:+|nuORF	ENST00000463846.5_1_1:44461379-44461848:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.8161926269531	2	484.7742	967.533846	0.43632	0.00021152	1.9371	0.00093906	2.3734	0.0011506	484.7749857205687	26.615	0.29096	26.593	26.409	26.7	-0.022238					11	9	2	0	0	0	0.25066	1	4356	4356		11.64	0	1	46968			19278	10774	10900	10901	24368	24368					0.048780540689676855
KPQPRPQTL	9	Unmodified	_KPQPRPQTL_					0	0	0		nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4;ENSG00000010219|ENST00000543431|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4;ENST00000544050.1_1_12:4721694-4722916:+|nuORF	nc|ENSG00000010219|Q9NR20-5|DYRK4	nc|ENSG00000010219|Q9NR20-5|DYRK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3346557617188	2	532.81419	1063.61383	0.42087	0.00022424	-0.33479	-0.00017838	0.086077	4.5863E-05	532.8140421314889	17.717	0.5702	17.717	17.507	18.077	0					44	18	3	0	0	0	0.25612	1	1709	1709		8.1555	1.0538	1	159600			19279	416	10901	10902	24369	24369					0.0845654046281652
KPQPRPQTL	9	Unmodified	_KPQPRPQTL_					0	0	0		nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4;ENSG00000010219|ENST00000543431|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4;ENST00000544050.1_1_12:4721694-4722916:+|nuORF	nc|ENSG00000010219|Q9NR20-5|DYRK4	nc|ENSG00000010219|Q9NR20-5|DYRK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.8136596679688	2	532.81419	1063.61383	0.16153	8.6063E-05	-0.2188	-0.00011658	-0.057274	-3.0517E-05	532.8140365304853	17.918	0.46497	17.801	17.573	18.038	-0.11739					40	15	3	0	0	0	0.14786	1	1747	1747		31.268	11.906	1	151470			19280	416	10901	10902	24370	24370					0.0845654046281652
KPQQRASSL	9	Unmodified	_KPQQRASSL_					0	0	0			REV__ENST00000451424.1_1_1:20974977-20975394:-|nuORF	REV__ENST00000451424.1_1_1:20974977-20975394:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7881774902344	2	507.788173	1013.56179	-0.0031228	-1.5857E-06	0.33238	0.00016878	0.32926	0.00016719	507.78831071053975	13.884	0.62005	13.884	13.687	14.307	0					51	21	4	0	0	0	0.30064	1	601	601		8.7454	0	1	454850	+		19281	21118	10902	10903	24371	24371					0.05555377049051913
KPQTKLLIL	9	Unmodified	_KPQTKLLIL_					0	0	0		nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;ENST00000423021.2_1_9:5112501-5112846:+|nuORF;nc|ENSG00000071564|P15923-3|TCF3;ENSG00000071564|ENST00000262965|TCF3;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000071564|P15923-3|TCF3;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-2|TCF12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3554077148438	2	527.35516	1052.69577	0.48204	0.00025421	-0.061544	-3.2455E-05	0.4205	0.00022175	527.3550405678573	43.472	1.0832	43.472	43.149	44.232	0					108	39	4	0	0	0	0.00051734	3	9520	9520;9566;9616		128.93	81.184	1	4601800			19282	4288;960;7888;12726	10903	10904	24372;24373;24374	24372					0.17152642821906738
KPQTKLLIL	9	Unmodified	_KPQTKLLIL_					0	0	0		nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;ENST00000423021.2_1_9:5112501-5112846:+|nuORF;nc|ENSG00000071564|P15923-3|TCF3;ENSG00000071564|ENST00000262965|TCF3;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000071564|P15923-3|TCF3;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-2|TCF12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3554077148438	2	527.35516	1052.69577	0.59282	0.00031263	-0.30313	-0.00015986	0.28969	0.00015277	527.3549248834764	43.338	0.89697	43.416	43.127	44.024	0.077515					93	32	4	0	0	0	0.0023895	3	9470	9470;9516;9563		107.1	70.973	1	5460000			19283	4288;960;7888;12726	10903	10904	24375;24376;24377	24375					0.17152642821906738
KPQTKLLIL	9	Unmodified	_KPQTKLLIL_					0	0	0		nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;ENST00000423021.2_1_9:5112501-5112846:+|nuORF;nc|ENSG00000071564|P15923-3|TCF3;ENSG00000071564|ENST00000262965|TCF3;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000071564|P15923-3|TCF3;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-2|TCF12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3554077148438	2	527.35516	1052.69577	0.53201	0.00028056	-0.16053	-8.4657E-05	0.37148	0.0001959	527.3549825538094	43.314	0.93355	43.398	43.061	43.995	0.083996					92	34	4	0	0	0	0.0013924	3	9452	9452;9500;9545		117.76	73.902	1	4411200			19284	4288;960;7888;12726	10903	10904	24378;24379;24380	24378					0.17152642821906738
KPQVPRFP	8	Unmodified	_KPQVPRFP_					0	0	0		ENSG00000043462|ENST00000046794|LCP2;ENST00000519594.5_1_5:169697651-169724717:-|nuORF;ENST00000522760.5_1_5:169700986-169724717:-|nuORF	ENSG00000043462|ENST00000046794|LCP2;ENST00000522760.5_1_5:169700986-169724717:-|nuORF	ENSG00000043462|ENST00000046794|LCP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7798767089844	2	484.787444	967.560336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.345	1	16.345	15.845	16.845	0								0	0	0	0.37078	1	1299	1299		5.2307	0	1				19285	618;11504	10904	10905	24381	24381					0.07525787750944346
KPRAFSKQ	8	Unmodified	_KPRAFSKQ_					0	0	0		ENST00000475228.5_3_1:6508600-6511680:+|nuORF;ENSG00000187017|ENST00000645284|ESPN	ENST00000475228.5_3_1:6508600-6511680:+|nuORF	ENST00000475228.5_3_1:6508600-6511680:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2825012207031	2	481.282526	960.550499	0.035897	1.7277E-05	-0.084619	-4.0726E-05	-0.048723	-2.3449E-05	481.28231887504705	23.627	0.5493	23.627	23.448	23.998	0					42	18	3	0	0	0	0.34294	1	3551	3551		7.2892	0.56607	1	179680			19286	7659	10905	10906	24382	24382					0.06864599745563282
KPRAGAANSQL	11	Unmodified	_KPRAGAANSQL_					0	0	0		ENST00000508193.2_1_12:121444088-121454277:-|nuORF;ENSG00000157895|ENST00000288757|C12orf43	ENST00000508193.2_1_12:121444088-121454277:-|nuORF	ENST00000508193.2_1_12:121444088-121454277:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.812255859375	2	556.812179	1111.60981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.873	1	14.763	14.263	15.263	-0.10981								0	0	0	0.3255	1	858	858		13.615	1.3742	1				19287	5332	10906	10907	24383	24383					0.05846450969079342
KPRALLITY	9	Unmodified	_KPRALLITY_					0	0	0		ENST00000448973.6_1_16:685217-685415:-|nuORF;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	ENST00000448973.6_1_16:685217-685415:-|nuORF	ENST00000448973.6_1_16:685217-685415:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2508544921875	2	537.837134	1073.65972	0.4526	0.00024342	-0.23598	-0.00012692	0.21662	0.00011651	537.8370852496358	40.879	0.4473	40.972	40.798	41.246	0.09267					23	16	2	0	0	0	0.24688	1	8792	8792		10.074	3.3508	1	154020			19288	3506	10907	10908	24384	24384					0.12583185645053163
KPRALLITY	9	Unmodified	_KPRALLITY_					0	0	0		ENST00000448973.6_1_16:685217-685415:-|nuORF;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	ENST00000448973.6_1_16:685217-685415:-|nuORF	ENST00000448973.6_1_16:685217-685415:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2508544921875	2	537.837134	1073.65972	0.30541	0.00016426	0.12799	6.8836E-05	0.4334	0.0002331	537.8372136554719	40.804	0.3727	40.904	40.75	41.123	0.099407					23	13	2	0	0	0	0.24289	1	8765	8765		8.7454	3.0136	1	231630			19289	3506	10907	10908	24385	24385					0.12583185645053163
KPRALLITY	9	Unmodified	_KPRALLITY_					0	0	0		ENST00000448973.6_1_16:685217-685415:-|nuORF;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	ENST00000448973.6_1_16:685217-685415:-|nuORF	ENST00000448973.6_1_16:685217-685415:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	537.837134	1073.65972	0.26065	0.00014019	0.0046618	2.5073E-06	0.26532	0.0001427	537.837214015429	41.052	0.34928	41.052	40.902	41.252	0	0.076226	1.4532E-05	NaN	8.7454	24	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104690			19290	3506	10907	10908							0.12583185645053163
KPRDVSSVEL	10	Unmodified	_KPRDVSSVEL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.3145751953125	2	565.31422	1128.61389	0.41833	0.00023649	-0.029135	-1.647E-05	0.38919	0.00022002	565.3142189306509	29.089	1.1887	29.089	28.729	29.917	0					118	41	4	0	0	0	1.0144E-05	3	5167	5116;5167;5215		150.62	92.897	1	4555800			19291	2631	10908	10909	24386;24387;24388	24387					0.05472495672142941
KPRDVSSVEL	10	Unmodified	_KPRDVSSVEL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.314453125	2	565.31422	1128.61389	0.38536	0.00021785	-0.019963	-1.1285E-05	0.3654	0.00020656	565.3142298063273	29.035	1.1211	29.047	28.737	29.858	0.012266					119	38	5	0	0	0	1.0144E-05	3	5152	5105;5152;5196		150.62	80.287	1	4961300			19292	2631	10908	10909	24389;24390;24391	24390					0.05472495672142941
KPRDVSSVEL	10	Unmodified	_KPRDVSSVEL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.3143920898438	2	565.31422	1128.61389	0.12465	7.0467E-05	0.21552	0.00012183	0.34017	0.0001923	565.3143427373406	29.06	1.0616	29.073	28.789	29.85	0.013474					118	37	4	0	0	0	2.2048E-05	3	5157	5106;5157;5207		143.21	83.845	1	4721900			19293	2631	10908	10909	24392;24393;24394	24393					0.05472495672142941
KPRDVSSVELL	11	Unmodified	_KPRDVSSVELL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.8562622070312	2	621.856252	1241.69795	0.4449	0.00027666	0.4025	0.0002503	0.8474	0.00052696	621.856124712959	40.644	0.59998	40.644	40.36	40.96	0					80	21	5	0	0	0	0.0070376	2	8665	8665;8716		89.609	43.909	1	1053500			19294	2631	10909	10910	24395;24396	24395					0.08677026769055374
KPRDVSSVELL	11	Unmodified	_KPRDVSSVELL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.8563842773438	2	621.856252	1241.69795	0.26831	0.00016685	0.61447	0.00038211	0.88279	0.00054897	621.8562028812548	40.453	0.51118	40.546	40.313	40.824	0.09267					74	18	5	0	0	0	0.0043433	1	8627	8627		96.034	58.96	1	1149700			19295	2631	10909	10910	24397	24397					0.08677026769055374
KPRDVSSVELL	11	Unmodified	_KPRDVSSVELL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.8565063476562	2	621.856252	1241.69795	0.3218	0.00020011	0.59017	0.000367	0.91196	0.00056711	621.8561629067425	40.426	0.57212	40.525	40.288	40.86	0.099407					72	20	5	0	0	0	0.001098	1	8609	8609		112.04	60.626	1	1275700			19296	2631	10909	10910	24398	24398					0.08677026769055374
KPREEATV	8	Unmodified	_KPREEATV_					0	0	0		ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2638244628906	2	465.256174	928.497795	0.19464	9.0555E-05	-0.92473	-0.00043024	-0.73009	-0.00033968	465.2556604036882	19.519	0.4513	19.463	19.227	19.678	-0.055693					26	15	2	0	0	0	0.4397	1	2308	2308		9.3474	1.4373	1	37964			19297	2063	10910	10911	24399	24399					0.030685968920806772
KPREFALAL	9	Unmodified	_KPREFALAL_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;BPTF|p.A3017Efs*15|1|0.04|ENSG00000171634|chr17:67975903-67975904|-/AATATTCT|frameshift_variant;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8140869140625	2	522.813659	1043.61277	0.57009	0.00029805	0.21274	0.00011122	0.78283	0.00040928	522.8138406872055	45.056	1.1643	45.125	44.349	45.514	0.068573					55	21	3	0	0	0	0.086462	1	10039	10039		40.239	2.088	1	734500			19298	79	10911	10912	24400	24400					0.09270326093883341
KPREGEEL	8	Unmodified	_KPREGEEL_					0	0	0			REV__GPATCH1|p.G283Afs*6|1|0.22|ENSG00000076650|chr19:33096441-33096441|G/-|frameshift_variant	REV__GPATCH1|p.G283Afs*6|1|0.22|ENSG00000076650|chr19:33096441-33096441|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2547302246094	2	479.253631	956.49271	0.081199	3.8915E-05	0.31377	0.00015038	0.39497	0.00018929	479.25378984863033	30.997	0.42127	30.997	30.781	31.202	0					27	14	2	0	0	0	0.42642	1	5709	5709		13.906	0	1	176280	+		19299	13832	10912	10913	24401	24401					0.012722930294785328
KPREKVLVI	9	Unmodified	_KPREKVLVI_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.777587890625	2	541.358234	1080.70191	0.38367	0.00020771	-0.82789	-0.00044818	-0.44421	-0.00024048	541.3577760153973	26.432	0.61987	26.393	26.1	26.72	-0.038671					35	21	2	0	0	0	0.25323	1	4365	4365		10.074	2.1638	1	199150			19300	415	10913	10914	24402	24402					0.16479161053416647
KPRFQQTSF	9	Unmodified	_KPRFQQTSF_					0	0	0		ENST00000416579.5_1_2:73200539-73298852:-|nuORF;ENSG00000144040|ENST00000272433|SFXN5;ENST00000484123.1_1_2:73280515-73298756:-|nuORF	ENST00000416579.5_1_2:73200539-73298852:-|nuORF	ENST00000416579.5_1_2:73200539-73298852:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.8037719726562	2	569.803823	1137.59309	-0.10794	-6.1507E-05	-0.087555	-4.9889E-05	-0.1955	-0.0001114	569.8039681024422	27.956	0.63292	27.956	27.7	28.333	0					48	21	3	0	0	0	0.0098873	2	4806	4806;4856		79.596	44.664	1	390990			19301	4561	10914	10915	24403;24404	24403					0.029799500831359182
KPRFQQTSF	9	Unmodified	_KPRFQQTSF_					0	0	0		ENST00000416579.5_1_2:73200539-73298852:-|nuORF;ENSG00000144040|ENST00000272433|SFXN5;ENST00000484123.1_1_2:73280515-73298756:-|nuORF	ENST00000416579.5_1_2:73200539-73298852:-|nuORF	ENST00000416579.5_1_2:73200539-73298852:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.8040771484375	2	569.803823	1137.59309	0.032582	1.8565E-05	-0.32581	-0.00018565	-0.29323	-0.00016708	569.8038334096829	27.916	0.70162	27.912	27.604	28.306	-0.0042572					54	24	3	0	0	0	0.013404	2	4806	4806;4859		74.2	44.359	1	423760			19302	4561	10914	10915	24405;24406	24405					0.029799500831359182
KPRFQQTSF	9	Unmodified	_KPRFQQTSF_					0	0	0		ENST00000416579.5_1_2:73200539-73298852:-|nuORF;ENSG00000144040|ENST00000272433|SFXN5;ENST00000484123.1_1_2:73280515-73298756:-|nuORF	ENST00000416579.5_1_2:73200539-73298852:-|nuORF	ENST00000416579.5_1_2:73200539-73298852:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.8040161132812	2	569.803823	1137.59309	-0.16217	-9.2405E-05	-0.14434	-8.2247E-05	-0.30651	-0.00017465	569.803876921737	27.894	0.60694	27.895	27.687	28.294	0.0004673					51	21	3	0	0	0	0.0098873	2	4789	4789;4841		79.596	32.002	1	387580			19303	4561	10914	10915	24407;24408	24407					0.029799500831359182
KPRGFARGL	9	Unmodified	_KPRGFARGL_					0	0	0		ENSG00000122565|ENST00000396386|CBX3;ENSG00000108468|ENST00000225603|CBX1	ENSG00000122565|ENST00000396386|CBX3	ENSG00000122565|ENST00000396386|CBX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3038330078125	2	501.303793	1000.59303	0.19705	9.878E-05	0.055005	2.7574E-05	0.25205	0.00012635	501.3037259401696	19.465	0.88841	19.465	19.157	20.045	0					94	31	4	0	0	0	0.027237	3	2264	2214;2264;2318		61.357	38.209	1	584240			19304	3052	10915	10916	24409;24410;24411	24410					0.09275994873792115
KPRGFARGL	9	Unmodified	_KPRGFARGL_					0	0	0		ENSG00000122565|ENST00000396386|CBX3;ENSG00000108468|ENST00000225603|CBX1	ENSG00000122565|ENST00000396386|CBX3	ENSG00000122565|ENST00000396386|CBX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.30389404296875	2	501.303793	1000.59303	0.33738	0.00016913	-0.24368	-0.00012216	0.093696	4.697E-05	501.30357917387624	19.619	0.94888	19.503	19.205	20.154	-0.11592					93	32	4	0	0	0	0.015402	3	2323	2272;2323;2378		71.134	40.909	1	552220			19305	3052	10915	10916	24412;24413;24414	24413					0.09275994873792115
KPRGFARGL	9	Unmodified	_KPRGFARGL_					0	0	0		ENSG00000122565|ENST00000396386|CBX3;ENSG00000108468|ENST00000225603|CBX1	ENSG00000122565|ENST00000396386|CBX3	ENSG00000122565|ENST00000396386|CBX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.30389404296875	2	501.303793	1000.59303	0.38696	0.00019398	-0.19953	-0.00010003	0.18743	9.3959E-05	501.30360224680646	19.589	0.92144	19.533	19.253	20.175	-0.055693					87	32	4	0	0	0	0.027237	3	2295	2246;2295;2346		61.357	35.958	1	610670			19306	3052	10915	10916	24415;24416;24417	24416					0.09275994873792115
KPRGKRYV	8	Unmodified	_KPRGKRYV_					0	0	0			REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF	REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7608642578125	2	502.311618	1002.60868	-0.0041997	-2.1096E-06	-0.9352	-0.00046976	-0.9394	-0.00047187	502.311167460758	12.652	0.50317	12.652	12.555	13.058	0					30	17	2	0	0	0	0.34408	1	219	219		2.3027	0	1	108800	+		19307	22035	10916	10917	24418	24418					0.10748281390840475
KPRGKRYV	8	Unmodified	_KPRGKRYV_					0	0	0			REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF	REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	502.311618	1002.60868	-0.098869	-4.9663E-05	-0.97649	-0.0004905	-1.0754	-0.00054017	502.3110831341683	12.689	0.55534	12.622	12.491	13.047	-0.067496	-0.015166	-1.9735E-05	NaN	2.3027	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99936	+		19308	22035	10916	10917							0.10748281390840475
KPRGLFITI	9	Unmodified	_KPRGLFITI_					0	0	0		nc|ENSG00000065833|P48163-2|ME1;ENSG00000065833|ENST00000369705|ME1	nc|ENSG00000065833|P48163-2|ME1	nc|ENSG00000065833|P48163-2|ME1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2802734375	2	522.831852	1043.64915	0.90159	0.00047138	-1.5978	-0.00083539	-0.69622	-0.000364	522.8308197948597	50.612	0.81396	50.612	50.267	51.081	0					83	29	4	0	0	0	0.16853	1	11728	11728		38.176	7.539	1	2375600			19309	826	10917	10918	24419	24419					0.12907202990618316
KPRKAEEAGG	10	Unmodified	_KPRKAEEAGG_					0	0	0		ENST00000511056.1_1_5:180480224-180482222:+|nuORF;ENST00000509395.1_1_5:180480083-180480502:+|nuORF;ENST00000491209.5_1_5:180477238-180480502:+|nuORF;ENST00000376841.6_1_5:180477238-180482451:+|nuORF	ENST00000511056.1_1_5:180480224-180482222:+|nuORF	ENST00000511056.1_1_5:180480224-180482222:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2595825195312	2	521.78563	1041.55671	0.043724	2.2814E-05	0.81376	0.00042461	0.85749	0.00044742	521.7859554218696	14.033	0.75265	13.929	13.763	14.516	-0.10466					36	25	2	0	0	0	0.31745	1	673	673		8.7454	2.0222	1	274310			19310	9926	10918	10919	24420	24420					0.037590731864384
KPRKLVNTI	9	Unmodified	_KPRKLVNTI_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.8484497070312	2	534.848033	1067.68151	0.41178	0.00022024	0.38558	0.00020623	0.79736	0.00042646	534.8481468844776	19.427	0.8554	19.371	19.048	19.904	-0.055693					82	29	4	0	0	0	0.0046246	2	2199	2199;2242		89.401	45.628	1	525890			19311	322	10919	10920	24421;24422	24421					0.1503799039360274
KPRKLVNTI	9	Unmodified	_KPRKLVNTI_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	534.848033	1067.68151	0.28227	0.00015097	0.42411	0.00022684	0.70638	0.00037781	534.8482092438643	19.213	0.8707	19.213	18.978	19.849	0	-0.074769	-1.6048E-05	NaN	89.401	82	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	562540			19312	322	10919	10920							0.1503799039360274
KPRKLVNTI	9	Unmodified	_KPRKLVNTI_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	534.848033	1067.68151	0.24577	0.00013145	0.50971	0.00027262	0.75548	0.00040407	534.8482229227145	19.396	0.92175	19.28	19.005	19.927	-0.11592	-0.0083755	7.5516E-05	NaN	89.401	88	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484240			19313	322	10919	10920							0.1503799039360274
KPRLDTEQL	9	Unmodified	_KPRLDTEQL_					0	0	0		ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000479267.2_3_7:128231993-128232035:+|nuORF;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3092041015625	2	550.308938	1098.60332	0.047989	2.6409E-05	0.29349	0.00016151	0.34148	0.00018792	550.3090753433523	27.928	0.54089	27.928	27.7	28.241	0					31	18	2	0	0	0	0.19208	1	4789	4789		33.445	17.296	1	240070			19314	4735;12746	10920	10921	24423	24423					0.05796513017685356
KPRLDTEQL	9	Unmodified	_KPRLDTEQL_					0	0	0		ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000479267.2_3_7:128231993-128232035:+|nuORF;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	550.308938	1098.60332	0.11395	6.2706E-05	0.23582	0.00012977	0.34976	0.00019248	550.3090159087355	27.897	0.64618	27.892	27.632	28.278	-0.0042572	0.0005007	-6.0487E-05	NaN	59.368	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204330			19315	4735;12746	10920	10921							0.05796513017685356
KPRLDTEQL	9	Unmodified	_KPRLDTEQL_					0	0	0		ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000479267.2_3_7:128231993-128232035:+|nuORF;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	550.308938	1098.60332	-0.0030375	-1.6716E-06	0.35726	0.0001966	0.35422	0.00019493	550.3090103364428	27.855	0.53015	27.855	27.657	28.188	0.0004673	-0.03671	7.3173E-05	NaN	59.368	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231400			19316	4735;12746	10920	10921							0.05796513017685356
KPRLGMTK	8	Unmodified	_KPRLGMTK_					0	0	0		ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2924499511719	2	465.781305	929.548056	-0.13582	-6.3262E-05	3.2052	0.0014929	3.0694	0.0014297	465.7845013604492	18.357	1.3166	18.357	17.69	19.006	0					98	45	3	0	0	0	0.34167	1	2034	2034		7.2892	2.5332	1	82568			19317	6485	10921	10922	24424	24424					0.08046428016245954
KPRLPRRYGR	10	Unmodified	_KPRLPRRYGR_					0	0	0			REV__ENST00000574094.5_1_16:16275679-16317348:-|nuORF	REV__ENST00000574094.5_1_16:16275679-16317348:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.899169921875	2	649.899454	1297.78436	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.758	1	93.758	93.258	94.258	0								0	0	0	0.38196	1	24983	24983		0	0	1		+		19318	13066	10922	10923	24425	24425					0.14737495904910247
KPRNKSYGI	9	Unmodified	_KPRNKSYGI_					0	0	0		ENST00000519288.5_1_8:28573184-28573232:+|nuORF	ENST00000519288.5_1_8:28573184-28573232:+|nuORF	ENST00000519288.5_1_8:28573184-28573232:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8063354492188	2	531.806365	1061.59818	0.18686	9.9372E-05	-0.7405	-0.0003938	-0.55364	-0.00029443	531.8063538525367	14.426	0.5626	14.426	14.138	14.701	0					52	19	5	0	0	0	0.19083	1	730	730		24.991	6.8446	1	153990			19319	11454	10923	10924	24426	24426					0.06984253945756791
KPRNKSYGI	9	Unmodified	_KPRNKSYGI_					0	0	0		ENST00000519288.5_1_8:28573184-28573232:+|nuORF	ENST00000519288.5_1_8:28573184-28573232:+|nuORF	ENST00000519288.5_1_8:28573184-28573232:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8062744140625	2	531.806365	1061.59818	0.15131	8.0466E-05	-0.52882	-0.00028123	-0.37751	-0.00020076	531.8063390186302	14.572	0.52413	14.506	14.32	14.845	-0.066068					41	18	4	0	0	0	0.21447	1	768	768		21.537	7.6309	1	130710			19320	11454	10923	10924	24427	24427					0.06984253945756791
KPRNLNVSF	9	Unmodified	_KPRNLNVSF_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.8067016601562	2	537.806365	1073.59818	0.69126	0.00037177	-0.13579	-7.3031E-05	0.55547	0.00029873	537.8062551666114	32.577	1.0849	32.577	32.225	33.31	0					102	38	4	0	0	0	0.00045155	2	6231	6231;6284		129.77	29.973	1	2677900			19321	307	10924	10925	24428;24429	24428					0.0643225394574074
KPRNLNVSF	9	Unmodified	_KPRNLNVSF_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.8067626953125	2	537.806365	1073.59818	0.62856	0.00033804	-0.089087	-4.7912E-05	0.53947	0.00029013	537.8063191581274	32.448	1.0779	32.503	32.206	33.284	0.055309					101	38	4	0	0	0	0.0013683	2	6190	6190;6242		118.07	29.115	1	2942400			19322	307	10924	10925	24430;24431	24430					0.0643225394574074
KPRNLNVSF	9	Unmodified	_KPRNLNVSF_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.806884765625	2	537.806365	1073.59818	0.52518	0.00028245	0.019162	1.0306E-05	0.54435	0.00029275	537.8063570206193	32.476	1.0929	32.531	32.223	33.316	0.054375					121	39	5	0	0	0	0.037019	1	6251	6251		57.722	7.789	1	2779300			19323	307	10924	10925	24432	24432					0.0643225394574074
KPRNVVFVDM	10	Oxidation (M)	_KPRNVVFVDM(Oxidation (M))_		KPRNVVFVDM(1)		KPRNVVFVDM(61)	0	0	1		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.55340576171875	3	407.553386	1219.63833	-0.24214	-9.8685E-05	0.16419	6.6918E-05	-0.077947	-3.1767E-05	407.5535053358111	31.177	0.72143	31.177	30.889	31.61	0					87	25	5	0	0	0	0.040516	1	5810	5810		61.09	45.351	1	2765000			19324	6468	10925	10926	24433	24433		753			0.03729432553996048
KPRNVVFVDM	10	Oxidation (M)	_KPRNVVFVDM(Oxidation (M))_		KPRNVVFVDM(1)		KPRNVVFVDM(120)	0	0	1		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.82666015625	2	610.82644	1219.63833	0.15582	9.5181E-05	-0.052173	-3.1868E-05	0.10365	6.3313E-05	610.8264425008739	31.196	0.63518	31.196	30.918	31.553	0					67	22	4	0	0	0	0.00014398	1	5785	5785		121.35	83.17	1	1225000			19325	6468	10925	10926	24434	24434		753			0.03729432553996048
KPRNVVFVDM	10	Oxidation (M)	_KPRNVVFVDM(Oxidation (M))_		KPRNVVFVDM(1)		KPRNVVFVDM(55)	0	0	1		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5533752441406	3	407.553386	1219.63833	-0.26241	-0.00010695	0.31027	0.00012645	0.047862	1.9506E-05	407.55355771650983	31.161	0.66311	31.204	30.911	31.574	0.042366					84	23	5	0	0	0	0.067258	2	5762	5762;5807		55.235	38.669	1	3027900			19326	6468	10925	10926	24435;24436	24435		753			0.03729432553996048
KPRNVVFVDM	10	Oxidation (M)	_KPRNVVFVDM(Oxidation (M))_		KPRNVVFVDM(1)		KPRNVVFVDM(140)	0	0	1		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.82666015625	2	610.82644	1219.63833	0.072594	4.4342E-05	0.07608	4.6472E-05	0.14867	9.0814E-05	610.8264911027247	31.138	0.63527	31.173	30.93	31.566	0.034048					68	22	4	0	0	0	6.6676E-05	1	5777	5777		143.91	98.21	1	1431000			19327	6468	10925	10926	24437	24437		753			0.03729432553996048
KPRNVVFVDM	10	Oxidation (M)	_KPRNVVFVDM(Oxidation (M))_		KPRNVVFVDM(1)		KPRNVVFVDM(48)	0	0	1		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5534362792969	3	407.553386	1219.63833	-0.061802	-2.5188E-05	0.087189	3.5534E-05	0.025387	1.0347E-05	407.55347021243074	31.137	0.70726	31.178	30.88	31.587	0.040989					87	25	5	0	0	0	0.10152	2	5792	5748;5792		47.732	31.993	1	3028100			19328	6468	10925	10926	24438;24439	24439		753			0.03729432553996048
KPRNVVFVDM	10	Oxidation (M)	_KPRNVVFVDM(Oxidation (M))_		KPRNVVFVDM(1)		KPRNVVFVDM(40)	0	0	1		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.82666015625	2	610.82644	1219.63833	0.20701	0.00012645	-0.12935	-7.9008E-05	0.077664	4.7439E-05	610.826431538253	31.137	0.60213	31.178	30.933	31.535	0.040991					67	21	5	0	0	0	0.13784	1	5865	5865		40.239	24.991	1	1360200			19329	6468	10925	10926	24440	24440		753			0.03729432553996048
KPRPAGFVDNK	11	Unmodified	_KPRPAGFVDNK_					0	0	0		ENST00000391875.6_2_1:224505599-224517865:-|nuORF;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL	ENST00000391875.6_2_1:224505599-224517865:-|nuORF	ENST00000391875.6_2_1:224505599-224517865:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.23211669921875	3	410.231412	1227.67241	-0.10162	-4.1686E-05	0.70047	0.00028735	0.59885	0.00024567	410.2317625624956	103.55	0.55281	103.56	103.51	104.07	0.0082626					109	76	2	0	0	0	0.45822	1	27531	27531		3.5927	0.52041	1	4401600			19330	10027	10926	10927	24441	24441					0.0676759703726475
KPRPIIPML	9	Oxidation (M)	_KPRPIIPM(Oxidation (M))L_		KPRPIIPM(1)L		KPRPIIPM(93)L	0	0	1		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8338623046875	2	540.833537	1079.65252	0.45004	0.0002434	0.16992	9.1899E-05	0.61996	0.0003353	540.8335572180654	43.341	1.6058	43.341	42.407	44.013	0					142	58	3	0	0	0	0.0041925	2	9500	9500;9549		92.822	69.674	1	2257700			19331	3333	10927	10928	24442;24443	24442		423			0.11588129772940192
KPRPIIPML	9	Oxidation (M)	_KPRPIIPM(Oxidation (M))L_		KPRPIIPM(1)L		KPRPIIPM(82)L	0	0	1		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8338012695312	2	540.833537	1079.65252	0.59075	0.0003195	0.016804	9.0884E-06	0.60755	0.00032859	540.8334909242675	43.116	1.5212	43.193	42.344	43.865	0.077515					147	55	4	0	0	0	0.0085732	2	9418	9418;9469		81.613	58.465	1	2630900			19332	3333	10927	10928	24444;24445	24444		423			0.11588129772940192
KPRPIIPML	9	Oxidation (M)	_KPRPIIPM(Oxidation (M))L_		KPRPIIPM(1)L		KPRPIIPM(82)L	0	0	1		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.833984375	2	540.833537	1079.65252	0.47175	0.00025514	0.087071	4.7091E-05	0.55882	0.00030223	540.8335573929412	43.099	1.4683	43.183	42.347	43.815	0.083992					159	53	4	0	0	0	0.0085732	3	9395	9395;9443;9484		81.613	55.286	1	2585700			19333	3333	10927	10928	24446;24447;24448	24446		423			0.11588129772940192
KPRPPPLSP	9	Unmodified	_KPRPPPLSP_					0	0	0		ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.8004455566406	2	494.800552	987.58655	0.33979	0.00016813	-0.3879	-0.00019193	-0.048106	-2.3803E-05	494.80022596315024	24.841	1.064	24.785	24.25	25.314	-0.055931					64	36	2	0	0	0	0.20626	1	3917	3917		22.736	3.4793	1	185860			19334	3227	10928	10929	24449	24449					0.09226056922409498
KPRPPPLSP	9	Unmodified	_KPRPPPLSP_					0	0	0		ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.80010986328125	2	494.800552	987.58655	0.089821	4.4443E-05	-0.13897	-6.8763E-05	-0.049151	-2.432E-05	494.80040793092286	24.717	0.95078	24.686	24.286	25.237	-0.031408					60	32	2	0	0	0	0.18123	1	3882	3882		34.402	3.7652	1	218270			19335	3227	10928	10929	24450	24450					0.09226056922409498
KPRPPPVSA	9	Unmodified	_KPRPPPVSA_					0	0	0		ENSG00000215217|ENST00000399810|CFAP90	ENSG00000215217|ENST00000399810|CFAP90	ENSG00000215217|ENST00000399810|CFAP90	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.76666259765625	2	474.784902	947.55525	0.053988	2.5633E-05	-0.37313	-0.00017716	-0.31914	-0.00015152	474.7844626477351	17.674	0.66873	17.557	17.289	17.957	-0.11739					34	22	2	0	0	0	0.24471	1	1698	1698		17.113	5.4726	1	70668			19336	8403	10929	10930	24451	24451					0.07937483888326824
KPRPPPVSA	9	Unmodified	_KPRPPPVSA_					0	0	0		ENSG00000215217|ENST00000399810|CFAP90	ENSG00000215217|ENST00000399810|CFAP90	ENSG00000215217|ENST00000399810|CFAP90	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.76611328125	2	474.784902	947.55525	0.15135	7.1859E-05	-0.32552	-0.00015455	-0.17417	-8.2695E-05	474.78429729329554	17.682	0.54231	17.622	17.358	17.9	-0.060431					31	18	2	0	0	0	0.25527	1	1703	1703		8.7454	3.9894	1	64896			19337	8403	10929	10930	24452	24452					0.07937483888326824
KPRPSAGEGA	10	Unmodified	_KPRPSAGEGA_					0	0	0			REV__ENST00000310455.3_1_8:8999168-9008131:-|nuORF	REV__ENST00000310455.3_1_8:8999168-9008131:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.77703857421875	2	485.259248	968.503943	0.18595	9.0233E-05	0.4844	0.00023506	0.67035	0.00032529	485.2592265637201	22.107	1.56	22.107	20.973	22.533	0					104	55	3	0	0	0	0.29589	1	3112	3112		22.736	11.912	1	230850	+		19338	19894	10930	10931	24453	24453					0.018431151236200094
KPRQGTEL	8	Unmodified	_KPRQGTEL_					0	0	0			REV__ENST00000517535.5_1_8:22411983-22423386:+|nuORF	REV__ENST00000517535.5_1_8:22411983-22423386:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.27203369140625	2	464.764166	927.513779	-0.14303	-6.6476E-05	-0.22624	-0.00010515	-0.36927	-0.00017162	464.7640517856036	14.32	0.49321	14.254	14.07	14.563	-0.066067					29	17	2	0	0	0	0.3415	1	678	678		13.042	1.4022	1	97290	+		19339	15099	10931	10932	24454	24454					0.047123031289856954
KPRQRGKG	8	Unmodified	_KPRQRGKG_					0	0	0			REV__ENST00000373696.7_1_X:70823497-70824427:+|nuORF	REV__ENST00000373696.7_1_X:70823497-70824427:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.7925109863281	2	463.785767	925.556982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.111	1	26.111	25.611	26.611	0								0	0	0	0.37183	1	4254	4254		4.756	0.81161	1		+		19340	20449	10932	10933	24455	24455					0.09122537696953259
KPRRSHAF	8	Unmodified	_KPRRSHAF_					0	0	0		ENST00000436054.1_1_9:74929950-74943580:+|nuORF	ENST00000436054.1_1_9:74929950-74943580:+|nuORF	ENST00000436054.1_1_9:74929950-74943580:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2954406738281	2	499.785767	997.556982	0.18156	9.074E-05	-1.8758	-0.00093751	-1.6943	-0.00084677	499.7847843330749	33.458	0.49598	33.524	33.215	33.711	0.0667					26	15	3	0	0	0	0.34319	1	6417	6417		2.5775	0.27475	1	113680			19341	10516	10933	10934	24456	24456					0.05810537696936535
KPRRSHAF	8	Unmodified	_KPRRSHAF_					0	0	0		ENST00000436054.1_1_9:74929950-74943580:+|nuORF	ENST00000436054.1_1_9:74929950-74943580:+|nuORF	ENST00000436054.1_1_9:74929950-74943580:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	499.785767	997.556982	0.71327	0.00035648	-6.5917	-0.0032944	-5.8784	-0.0029379	500.28252677981357	33.819	0.16224	33.819	33.753	33.916	0	0.21412	-0.0044164	NaN	2.5775	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46832			19342	10516	10933	10934							0.05810537696936535
KPRRSHAF	8	Unmodified	_KPRRSHAF_					0	0	0		ENST00000436054.1_1_9:74929950-74943580:+|nuORF	ENST00000436054.1_1_9:74929950-74943580:+|nuORF	ENST00000436054.1_1_9:74929950-74943580:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	499.785767	997.556982	0.5288	0.00026429	-2.4327	-0.0012158	-1.9039	-0.00095156	499.78468173834216	33.405	0.35815	33.471	33.266	33.624	0.06636	-0.13364	-0.00025925	NaN	2.5775	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172180			19343	10516	10933	10934							0.05810537696936535
KPRSAAGLSSL	11	Unmodified	_KPRSAAGLSSL_					0	0	0		nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217	nc|ENSG00000120549|Q5T5P2-4|KIAA1217	nc|ENSG00000120549|Q5T5P2-4|KIAA1217	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.8161010742188	2	543.81693	1085.61931	0.31615	0.00017193	0.19228	0.00010457	0.50843	0.00027649	543.8167694716359	26.084	0.45021	26.084	25.9	26.35	0					23	15	2	0	0	0	0.39785	1	4235	4235		11.518	1.3673	1	113630			19344	2951	10934	10935	24457	24457					0.07992219254629163
KPRSLQTGF	9	Unmodified	_KPRSLQTGF_					0	0	0		ENSG00000132819|ENST00000356208|RBM38	ENSG00000132819|ENST00000356208|RBM38	ENSG00000132819|ENST00000356208|RBM38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2930908203125	2	517.293091	1032.57163	0.33416	0.00017286	-0.49736	-0.00025728	-0.1632	-8.4425E-05	517.2926619902788	24.878	1.2245	24.878	24.367	25.591	0					131	41	5	0	0	0	0.0063009	1	3896	3896		99.755	59.798	1	725810			19345	3667	10935	10936	24458	24458					0.05664565054416926
KPRSLQTGF	9	Unmodified	_KPRSLQTGF_					0	0	0		ENSG00000132819|ENST00000356208|RBM38	ENSG00000132819|ENST00000356208|RBM38	ENSG00000132819|ENST00000356208|RBM38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.2929077148438	2	517.293091	1032.57163	0.15586	8.0624E-05	-0.21935	-0.00011347	-0.063488	-3.2842E-05	517.2928214780661	25.025	1.3058	24.969	24.46	25.766	-0.055931					103	45	3	0	0	0	0.0027395	1	3914	3914		103.42	65.445	1	799220			19346	3667	10935	10936	24459	24459					0.05664565054416926
KPRSLQTGF	9	Unmodified	_KPRSLQTGF_					0	0	0		ENSG00000132819|ENST00000356208|RBM38	ENSG00000132819|ENST00000356208|RBM38	ENSG00000132819|ENST00000356208|RBM38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2930908203125	2	517.293091	1032.57163	-0.080459	-4.1621E-05	0.0069198	3.5796E-06	-0.073539	-3.8041E-05	517.2929636057928	24.93	1.3075	24.899	24.485	25.793	-0.03141					96	45	3	0	0	0	0.00033489	1	3901	3901		117.76	75.921	1	787010			19347	3667	10935	10936	24460	24460					0.05664565054416926
KPRSPDHVL	9	Unmodified	_KPRSPDHVL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7984008789062	2	524.79854	1047.58253	0.47018	0.00024675	-0.62692	-0.00032901	-0.15675	-8.226E-05	524.7980392461495	17.023	0.52878	17.023	16.689	17.217	0					39	17	3	0	0	0	0.16283	1	1491	1491		29.082	3.6823	1	204750			19348	3332	10936	10937	24461	24461					0.06063967428713113
KPRSPDHVL	9	Unmodified	_KPRSPDHVL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.79833984375	2	524.79854	1047.58253	0.26975	0.00014157	-0.37499	-0.0001968	-0.10524	-5.523E-05	524.7981996103223	17.193	0.53889	17.076	16.72	17.259	-0.11739					49	19	3	0	0	0	0.20626	1	1545	1545		22.736	3.4793	1	176180			19349	3332	10936	10937	24462	24462					0.06063967428713113
KPRSPDHVL	9	Unmodified	_KPRSPDHVL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7981567382812	2	524.79854	1047.58253	0.57467	0.00030159	-0.77931	-0.00040898	-0.20463	-0.00010739	524.798059971962	17.11	0.47952	17.05	16.731	17.211	-0.060429					43	17	3	0	0	0	0.088443	1	1516	1516		39.95	14.55	1	190240			19350	3332	10936	10937	24463	24463					0.06063967428713113
KPRSPFSKI	9	Unmodified	_KPRSPFSKI_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5;nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENST00000493523.2_1_2:73302651-73316730:-|nuORF	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3011474609375	2	530.319109	1058.62366	0.30571	0.00016212	-0.89442	-0.00047433	-0.58871	-0.0003122	530.3185019763764	23.354	0.58919	23.354	23.11	23.699	0					48	20	3	0	0	0	0.26278	1	3448	3448		14.405	1.8738	1	157680			19351	3888	10937	10938	24464	24464					0.09669728468179528
KPRSPFSKI	9	Unmodified	_KPRSPFSKI_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5;nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENST00000493523.2_1_2:73302651-73316730:-|nuORF	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3009643554688	2	530.319109	1058.62366	0.26143	0.00013864	-1.0002	-0.00053044	-0.7388	-0.0003918	530.3184018723043	23.524	0.63775	23.452	23.153	23.791	-0.072559					50	22	3	0	0	0	0.22215	2	3433	3433;3482		20.415	1.3108	1	150430			19352	3888	10937	10938	24465;24466	24465					0.09669728468179528
KPRSPFSKI	9	Unmodified	_KPRSPFSKI_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5;nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENST00000493523.2_1_2:73302651-73316730:-|nuORF	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3009643554688	2	530.319109	1058.62366	0.51672	0.00027403	-1.1764	-0.00062388	-0.65971	-0.00034986	530.3181895692832	23.544	0.59255	23.505	23.255	23.848	-0.038927					41	20	3	0	0	0	0.2719	1	3434	3434		13.042	2.2185	1	125230			19353	3888	10937	10938	24467	24467					0.09669728468179528
KPRSPFSKI	9	Unmodified	_KPRSPFSKI_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5;nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENST00000493523.2_1_2:73302651-73316730:-|nuORF	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	530.319109	1058.62366	0.30571	0.00016212	-0.89442	-0.00047433	-0.58871	-0.0003122	530.3185019763764	23.354	0.58919	23.354	23.11	23.699	0	-0.083193	0.00013178	NaN	20.415	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157680			19354	3888	10937	10938							0.09669728468179528
KPRSPVVEL	9	Unmodified	_KPRSPVVEL_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENST00000524899.1_1_11:67052494-67052918:+|nuORF;ENST00000416281.6_1_11:67049840-67052918:+|nuORF	ENSG00000173020|ENST00000308595|GRK2	ENSG00000173020|ENST00000308595|GRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.8113403320312	2	512.811116	1023.60768	0.23797	0.00012203	0.2542	0.00013036	0.49217	0.00025239	512.8111683420377	30.935	1.0281	30.935	30.525	31.553	0					92	36	3	0	0	0	0.0045319	3	5705	5705;5748;5855		90.135	46.277	1	1407400			19355	6687	10938	10939	24468;24469;24470	24468					0.09682022231288556
KPRSPVVEL	9	Unmodified	_KPRSPVVEL_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENST00000524899.1_1_11:67052494-67052918:+|nuORF;ENST00000416281.6_1_11:67049840-67052918:+|nuORF	ENSG00000173020|ENST00000308595|GRK2	ENSG00000173020|ENST00000308595|GRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.8113403320312	2	512.811116	1023.60768	0.10598	5.435E-05	0.38975	0.00019987	0.49573	0.00025422	512.8112358718772	30.927	1.0631	30.955	30.496	31.559	0.027946					101	37	4	0	0	0	0.0054984	2	5742	5659;5742		86.332	36.399	1	1627800			19356	6687	10938	10939	24471;24472	24472					0.09682022231288556
KPRSPVVEL	9	Unmodified	_KPRSPVVEL_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENST00000524899.1_1_11:67052494-67052918:+|nuORF;ENST00000416281.6_1_11:67049840-67052918:+|nuORF	ENSG00000173020|ENST00000308595|GRK2	ENSG00000173020|ENST00000308595|GRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.811279296875	2	512.811116	1023.60768	0.094895	4.8663E-05	0.39583	0.00020299	0.49073	0.00025165	512.8112248329588	30.907	0.93882	30.935	30.555	31.493	0.027157					87	33	4	0	0	0	0.0045319	2	5717	5717;5760		90.135	46.277	1	1757500			19357	6687	10938	10939	24473;24474	24473					0.09682022231288556
KPRSQIKNEI	10	Unmodified	_KPRSQIKNEI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.90667724609375	3	404.906816	1211.69862	-0.33336	-0.00013498	0.43182	0.00017485	0.098452	3.9864E-05	404.90695720290637	16.29	0.77163	16.176	15.866	16.638	-0.11434					63	26	4	0	0	0	0.37454	1	1274	1274		7.4771	1.2427	1	362850			19358	3320	10939	10940	24475	24475					0.10123866208732579
KPRSQRYESL	10	Unmodified	_KPRSQRYESL_					0	0	0		ENST00000486565.1_1_3:52028979-52029216:-|nuORF;ENSG00000162244|ENST00000294189|RPL29	ENST00000486565.1_1_3:52028979-52029216:-|nuORF	ENST00000486565.1_1_3:52028979-52029216:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.344482421875	2	632.343843	1262.67313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.629	1	16.566	16.066	17.066	-0.062534								0	0	0	0.38023	1	1384	1384		0	0	1				19359	5556	10940	10941	24476	24476					0.052303916863365885
KPRTRHKYLYF	11	Unmodified	_KPRTRHKYLYF_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2669677734375	3	503.62101	1507.8412	0.64003	0.00032233	0.7418	0.00037359	1.3818	0.00069592	503.95570009798746	32.195	0.43958	32.239	31.97	32.41	0.044323					19	15	2	0	0	0	0.33296	1	6039	6039		2.6312	0.37851	1	116800	+		19360	18241	10941	10942	24477	24477					0.1075949867079089
KPRTRHKYLYF	11	Unmodified	_KPRTRHKYLYF_					0	0	0			REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	REV__nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2667541503906	3	503.62101	1507.8412	0.36202	0.00018232	1.2966	0.00065301	1.6587	0.00083534	503.6215859045798	32.177	0.33278	32.218	32.123	32.456	0.040989					15	11	2	0	0	0	0.3331	1	6076	6076		2.2527	0	1	107630	+		19361	18241	10941	10942	24478	24478					0.1075949867079089
KPRTVATPL	9	Unmodified	_KPRTVATPL_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.8057861328125	2	491.805834	981.597115	0.14875	7.3156E-05	-0.0032463	-1.5965E-06	0.1455	7.1559E-05	491.80572277109366	23.305	0.88803	23.305	22.969	23.857	0					61	30	3	0	0	0	0.15763	2	3423	3375;3423		29.841	11.694	1	378900			19362	2094	10942	10943	24479;24480	24480					0.10558039576847023
KPRTVATPL	9	Unmodified	_KPRTVATPL_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.80572509765625	2	491.805834	981.597115	0.20151	9.9102E-05	-0.0979	-4.8148E-05	0.10361	5.0954E-05	491.8056921848753	23.364	0.71846	23.277	22.967	23.685	-0.087608					62	25	3	0	0	0	0.048637	2	3404	3404;3448		53.404	19.002	1	472610			19363	2094	10942	10943	24481;24482	24481					0.10558039576847023
KPRTVATPL	9	Unmodified	_KPRTVATPL_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.8056640625	2	491.805834	981.597115	0.33512	0.00016482	-0.20934	-0.00010296	0.12578	6.1859E-05	491.8056346462818	23.379	0.78217	23.334	23.06	23.842	-0.044867					64	27	3	0	0	0	0.074552	3	3396	3396;3443;3525		43.772	9.3707	1	446620			19364	2094	10942	10943	24483;24484;24485	24483					0.10558039576847023
KPRTVFSDYL	10	Unmodified	_KPRTVFSDYL_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.3330078125	2	613.332413	1224.65027	0.51765	0.00031749	-0.022511	-1.3807E-05	0.49514	0.00030369	613.33235785271	47.946	0.99874	47.946	47.608	48.606	0					89	35	3	0	0	0	0.0029358	3	10933	10884;10933;10988		128.57	92.446	1	7508400			19365	8655	10943	10944	24486;24487;24488	24487					0.04693372568840459
KPRTVFSDYL	10	Unmodified	_KPRTVFSDYL_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	613.332763671875	2	613.332413	1224.65027	0.62383	0.00038262	-0.074572	-4.5738E-05	0.54926	0.00033688	613.3323233944042	47.835	1.0932	47.883	47.539	48.632	0.047523					97	40	3	0	0	0	0.0013725	2	10850	10850;10956		132.38	103.3	1	6297400			19366	8655	10943	10944	24489;24490	24489					0.04693372568840459
KPRTVFSDYL	10	Unmodified	_KPRTVFSDYL_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	613.3329467773438	2	613.332413	1224.65027	0.46619	0.00028593	0.11524	7.0681E-05	0.58143	0.00035661	613.3324225415713	47.8	1.0026	47.843	47.53	48.533	0.043324					108	37	4	0	0	0	0.0035922	2	10890	10842;10890		125.04	81.179	1	8581300			19367	8655	10943	10944	24491;24492	24492					0.04693372568840459
KPRVNPVTSL	10	Unmodified	_KPRVNPVTSL_					0	0	0		ENSG00000172572|ENST00000359062|PDE3A;ENST00000544307.1_1_12:20725060-20833202:+|nuORF	ENSG00000172572|ENST00000359062|PDE3A	ENSG00000172572|ENST00000359062|PDE3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7806396484375	2	555.835123	1109.65569	0.35625	0.00019801	-0.3717	-0.0002066	-0.015449	-8.5873E-06	555.8349533465231	30.613	0.3934	30.613	30.359	30.753	0					21	13	2	0	0	0	0.31581	1	5577	5577		11.495	2.7493	1	94758			19368	6648	10944	10945	24493	24493					0.10525096151332036
KPRVPPATAF	10	Unmodified	_KPRVPPATAF_					0	0	0		nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	nc|ENSG00000116984|Q99707-2|MTR	nc|ENSG00000116984|Q99707-2|MTR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7581176757812	2	542.319109	1082.62366	0.33535	0.00018187	-0.40287	-0.00021848	-0.067517	-3.6616E-05	542.3190623386072	31.579	1.2535	31.579	30.81	32.064	0					68	44	2	0	0	0	0.26905	1	5864	5864		31.268	12.011	1	255630			19369	2766	10945	10946	24494	24494					0.08565728468170164
KPRVPPATAF	10	Unmodified	_KPRVPPATAF_					0	0	0		nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	nc|ENSG00000116984|Q99707-2|MTR	nc|ENSG00000116984|Q99707-2|MTR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.75830078125	2	542.319109	1082.62366	0.32301	0.00017517	-0.38793	-0.00021038	-0.064924	-3.521E-05	542.3190973484989	31.577	1.0285	31.619	30.824	31.852	0.042366					55	36	2	0	0	0	0.19311	1	5828	5828		51.63	29.883	1	248090			19370	2766	10945	10946	24495	24495					0.08565728468170164
KPRVPPATAF	10	Unmodified	_KPRVPPATAF_					0	0	0		nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	nc|ENSG00000116984|Q99707-2|MTR	nc|ENSG00000116984|Q99707-2|MTR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2937622070312	2	542.319109	1082.62366	0.82212	0.00044585	-0.63926	-0.00034668	0.18286	9.917E-05	542.3186436837135	32.094	0.69517	32.137	31.909	32.605	0.042366					32	24	2	0	0	0	0.31237	1	6073	6073		16.149	2.2431	1	100170			19371	2766	10945	10946	24496	24496					0.08565728468170164
KPRVTPVEV	9	Unmodified	_KPRVTPVEV_					0	0	0		ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1	ENSG00000006712|ENST00000221265|PAF1	ENSG00000006712|ENST00000221265|PAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.8114013671875	2	512.811116	1023.60768	0.24918	0.00012778	0.064812	3.3236E-05	0.31399	0.00016102	512.8110482706048	26.873	0.73811	26.873	26.586	27.324	0					75	25	4	0	0	0	0.074552	2	4460	4460;4510		43.772	13.136	1	394870			19372	367	10946	10947	24497;24498	24497					0.09682022231277188
KPRVTPVEV	9	Unmodified	_KPRVTPVEV_					0	0	0		ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1	ENSG00000006712|ENST00000221265|PAF1	ENSG00000006712|ENST00000221265|PAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.8111572265625	2	512.811116	1023.60768	0.20151	0.00010334	0.18911	9.698E-05	0.39062	0.00020032	512.8111175272511	26.826	0.64983	26.804	26.592	27.242	-0.021412					57	22	4	0	0	0	0.074552	2	4510	4457;4510		43.772	13.136	1	427520			19373	367	10946	10947	24499;24500	24500					0.09682022231277188
KPRVTPVEV	9	Unmodified	_KPRVTPVEV_					0	0	0		ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-3|PAF1	ENSG00000006712|ENST00000221265|PAF1	ENSG00000006712|ENST00000221265|PAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.8111572265625	2	512.811116	1023.60768	0.32419	0.00016625	0.015457	7.9267E-06	0.33965	0.00017418	512.8110389997323	26.857	0.67044	26.846	26.595	27.266	-0.01156					60	23	4	0	0	0	0.058995	2	4501	4456;4501		49.554	11.58	1	454980			19374	367	10946	10947	24501;24502	24502					0.09682022231277188
KPRYDLLLRLF	11	Unmodified	_KPRYDLLLRLF_					0	0	0			REV__ENST00000313771.9_1_10:90751381-90762834:+|nuORF	REV__ENST00000313771.9_1_10:90751381-90762834:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2818603515625	3	478.625761	1432.85546	0.26433	0.00012652	-0.44084	-0.000211	-0.17651	-8.4483E-05	478.62552452642734	30.155	0.75229	30.155	29.801	30.553	0					58	26	3	0	0	0	0.33274	1	5505	5505		3.5927	2.263	1	238730	+		19375	19920	10947	10948	24503	24503					0.15634151099061455
KPRYDLLLRLF	11	Unmodified	_KPRYDLLLRLF_					0	0	0			REV__ENST00000313771.9_1_10:90751381-90762834:+|nuORF	REV__ENST00000313771.9_1_10:90751381-90762834:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.28155517578125	3	478.625761	1432.85546	-0.046655	-2.233E-05	0.17335	8.2969E-05	0.12669	6.0638E-05	478.6258226582194	30.277	0.71474	30.305	29.923	30.638	0.027157					51	24	3	0	0	0	0.33146	1	5492	5492		4.1166	2.5243	1	306340	+		19376	19920	10947	10948	24504	24504					0.15634151099061455
KPRYKELY	8	Unmodified	_KPRYKELY_					0	0	0			REV__nc|ENSG00000184489|O75365-3|PTP4A3	REV__nc|ENSG00000184489|O75365-3|PTP4A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7739868164062	2	548.811116	1095.60768	0.33735	0.00018514	-3.2762	-0.001798	-2.9389	-0.0016129	548.809052556786	29.173	0.35053	29.186	29.009	29.359	0.013474					15	12	2	0	0	0	0.34337	1	5170	5170		5.2307	0.47466	1	64795	+		19377	14767	10948	10949	24505	24505					0.0637002223129457
KPRYLHSK	8	Unmodified	_KPRYLHSK_					0	0	0			REV__ENST00000498108.5_1_1:225685479-225688852:-|nuORF	REV__ENST00000498108.5_1_1:225685479-225688852:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.22607421875	2	514.803626	1027.5927	0.044268	2.2789E-05	4.3109	0.0022192	4.3551	0.002242	514.8091147598736	28.351	0.45692	28.351	28.065	28.522	0					23	15	2	0	0	0	0.34117	1	4901	4901		13.906	0	1	172910	+		19378	21693	10949	10950	24506	24506					0.08000575153937461
KPRYLHSK	8	Unmodified	_KPRYLHSK_					0	0	0			REV__ENST00000498108.5_1_1:225685479-225688852:-|nuORF	REV__ENST00000498108.5_1_1:225685479-225688852:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	514.803626	1027.5927	0.021203	1.0915E-05	9.0158	0.0046414	9.037	0.0046523	514.8091316482576	28.281	0.4854	28.277	28.085	28.57	-0.0042553	-0.031466	0.00031136	NaN	13.906	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159430	+		19379	21693	10949	10950							0.08000575153937461
KPRYLHSK	8	Unmodified	_KPRYLHSK_					0	0	0			REV__ENST00000498108.5_1_1:225685479-225688852:-|nuORF	REV__ENST00000498108.5_1_1:225685479-225688852:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	514.803626	1027.5927	-0.1127	-5.8019E-05	8.8807	0.0045718	8.768	0.0045138	514.8093005625265	28.296	0.58749	28.297	27.992	28.58	0.0004673	-0.011509	0.00017223	NaN	13.906	50	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195930	+		19380	21693	10949	10950							0.08000575153937461
KPRYPPDSVRL	11	Unmodified	_KPRYPPDSVRL_					0	0	0		ENST00000462422.5_1_1:246216281-246670414:-|nuORF;ENST00000470863.1_1_1:246490478-246670519:-|nuORF;nc|ENSG00000185420|Q9H7B4-3|SMYD3;ENSG00000185420|ENST00000490107|SMYD3	ENST00000462422.5_1_1:246216281-246670414:-|nuORF	ENST00000462422.5_1_1:246216281-246670414:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.5728454589844	3	443.254216	1326.74082	0.01702	7.5444E-06	-0.1965	-8.7098E-05	-0.17948	-7.9553E-05	443.2539418327185	30.858	1.2612	30.886	30.298	31.559	0.027948					124	44	3	0	0	0	0.33056	1	5771	5771		8.7518	4.0359	1	359610			19381	7533	10950	10951	24507	24507					0.09051841617110767
KPSARMLLL	9	Oxidation (M)	_KPSARM(Oxidation (M))LLL_		KPSARM(1)LLL		KPSARM(50)LLL	0	0	1		ENSG00000108439|ENST00000642017|PNPO;nc|ENSG00000108439|Q9NVS9-3|PNPO;nc|ENSG00000108439|Q9NVS9-4|PNPO	ENSG00000108439|ENST00000642017|PNPO	ENSG00000108439|ENST00000642017|PNPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.815185546875	2	522.815344	1043.61614	-0.34152	-0.00017855	0.033419	1.7472E-05	-0.3081	-0.00016108	522.8153546023703	35.177	1.488	35.177	34.5	35.988	0					135	53	4	0	0	0	0.058995	2	7039	6983;7039		49.554	20.209	1	1284600			19382	2186	10951	10952	24508;24509	24509		268			0.0960725287625337
KPSARMLLL	9	Oxidation (M)	_KPSARM(Oxidation (M))LLL_		KPSARM(1)LLL		KPSARM(58)LLL	0	0	1		ENSG00000108439|ENST00000642017|PNPO;nc|ENSG00000108439|Q9NVS9-3|PNPO;nc|ENSG00000108439|Q9NVS9-4|PNPO	ENSG00000108439|ENST00000642017|PNPO	ENSG00000108439|ENST00000642017|PNPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8152465820312	2	522.815344	1043.61614	-0.56134	-0.00029348	0.29054	0.0001519	-0.2708	-0.00014158	522.8155679667295	35.023	1.4838	35.099	34.383	35.867	0.075306					140	53	4	0	0	0	0.037019	2	7002	7002;7053		57.722	23.32	1	1449600			19383	2186	10951	10952	24510;24511	24510		268			0.0960725287625337
KPSARMLLL	9	Oxidation (M)	_KPSARM(Oxidation (M))LLL_		KPSARM(1)LLL		KPSARM(52)LLL	0	0	1		ENSG00000108439|ENST00000642017|PNPO;nc|ENSG00000108439|Q9NVS9-3|PNPO;nc|ENSG00000108439|Q9NVS9-4|PNPO	ENSG00000108439|ENST00000642017|PNPO	ENSG00000108439|ENST00000642017|PNPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8150634765625	2	522.815344	1043.61614	-0.40328	-0.00021084	0.27781	0.00014524	-0.12547	-6.5597E-05	522.8154713343562	35.038	1.4447	35.116	34.444	35.889	0.077377					117	51	3	0	0	0	0.05341	3	6950	6950;6998;7050		51.63	17.527	1	1469200			19384	2186	10951	10952	24512;24513;24514	24512		268			0.0960725287625337
KPSATKGTL	9	Unmodified	_KPSATKGTL_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7686462402344	2	451.768917	901.523281	-0.13583	-6.1362E-05	-0.24163	-0.00010916	-0.37745	-0.00017052	451.7687339190275	14.04	0.3484	14.04	13.872	14.221	0					17	11	2	0	0	0	0.19083	1	608	608		24.991	0.97039	1	210750			19385	7334	10952	10953	24515	24515					0.06858071414524147
KPSATKGTL	9	Unmodified	_KPSATKGTL_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.76849365234375	2	451.768917	901.523281	-0.1717	-7.7568E-05	-0.04826	-2.1802E-05	-0.21996	-9.937E-05	451.7688009964427	14.134	0.42855	14.029	13.845	14.273	-0.10466					23	14	2	0	0	0	0.16685	1	634	634		28.495	4.4739	1	181180			19386	7334	10952	10953	24516	24516					0.06858071414524147
KPSATKGTL	9	Unmodified	_KPSATKGTL_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7687683105469	2	451.768917	901.523281	-0.15484	-6.995E-05	0.074006	3.3434E-05	-0.08083	-3.6517E-05	451.7688535262126	14.083	0.45979	14.017	13.889	14.349	-0.066068					28	15	3	0	0	0	0.19083	1	622	622		24.991	0.97039	1	188900			19387	7334	10952	10953	24517	24517					0.06858071414524147
KPSEERVREI	10	Unmodified	_KPSEERVREI_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B;nc|ENSG00000048392|Q7LG56-3|RRM2B;ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.89825439453125	3	414.89821	1241.6728	-0.14088	-5.8451E-05	-0.57122	-0.000237	-0.7121	-0.00029545	414.89813959581153	18.084	1.0187	18.084	17.771	18.79	0					107	34	5	0	0	0	0.1623	2	1805	1805;1853		37.251	20.976	1	1083400			19388	641	10953	10954	24518;24519	24518					0.06162971966477926
KPSEERVREI	10	Unmodified	_KPSEERVREI_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B;nc|ENSG00000048392|Q7LG56-3|RRM2B;ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.843505859375	2	621.843676	1241.6728	0.18677	0.00011614	0.022702	1.4117E-05	0.20947	0.00013026	621.8435516205263	18.077	0.4318	18.077	17.867	18.299	0					31	14	3	0	0	0	0.38522	1	1825	1825		0.35063	0	1	74556			19389	641	10953	10954	24520	24520					0.06162971966477926
KPSEERVREI	10	Unmodified	_KPSEERVREI_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B;nc|ENSG00000048392|Q7LG56-3|RRM2B;ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.8983459472656	3	414.89821	1241.6728	0.094846	3.9352E-05	-0.88556	-0.00036742	-0.79072	-0.00032807	414.89800846303615	18.25	1.2864	18.132	17.603	18.89	-0.11739					121	44	4	0	0	0	0.23653	3	1856	1856;1908;1955		28.181	14.663	1	1290900			19390	641	10953	10954	24521;24522;24523	24521					0.06162971966477926
KPSEERVREI	10	Unmodified	_KPSEERVREI_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B;nc|ENSG00000048392|Q7LG56-3|RRM2B;ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8980712890625	3	414.89821	1241.6728	-0.048585	-2.0158E-05	-0.581	-0.00024105	-0.62958	-0.00026121	414.89809057386833	18.279	1.0265	18.221	17.819	18.846	-0.058174					109	36	5	0	0	0	0.21811	2	1907	1857;1907		30.431	15.474	1	1296100			19391	641	10953	10954	24524;24525	24525					0.06162971966477926
KPSEERVREI	10	Unmodified	_KPSEERVREI_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B;nc|ENSG00000048392|Q7LG56-3|RRM2B;ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.8442993164062	2	621.843676	1241.6728	-0.078126	-4.8582E-05	0.25034	0.00015567	0.17221	0.00010709	621.8438098207789	18.299	0.36802	18.241	18.004	18.372	-0.058172					28	12	3	0	0	0	0.37297	1	1877	1877		1.1933	0	1	66331			19392	641	10953	10954	24526	24526					0.06162971966477926
KPSEERVREII	11	Unmodified	_KPSEERVREII_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B;nc|ENSG00000048392|Q7LG56-3|RRM2B;ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.59234619140625	3	452.592898	1354.75686	0.25332	0.00011465	-0.86196	-0.00039012	-0.60864	-0.00027547	452.5923819609806	30.296	0.7829	30.296	29.97	30.753	0					75	27	4	0	0	0	0.18539	2	5514	5514;5564		32.518	10.409	1	1272500			19393	641	10954	10955	24527;24528	24527					0.09367503063390359
KPSEERVREII	11	Unmodified	_KPSEERVREII_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B;nc|ENSG00000048392|Q7LG56-3|RRM2B;ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.591796875	3	452.592898	1354.75686	0.24406	0.00011046	-1.0108	-0.00045747	-0.76671	-0.00034701	452.5923509487427	30.242	0.9047	30.27	29.964	30.869	0.027946					78	31	4	0	0	0	0.22132	1	5495	5495		29.291	12.453	1	1129900			19394	641	10954	10955	24529	24529					0.09367503063390359
KPSEERVREII	11	Unmodified	_KPSEERVREII_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B;nc|ENSG00000048392|Q7LG56-3|RRM2B;ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.5921325683594	3	452.592898	1354.75686	-0.12334	-5.5821E-05	-0.42834	-0.00019386	-0.55168	-0.00024969	452.59258233947804	30.268	0.7771	30.295	29.956	30.733	0.027157					74	26	4	0	0	0	0.22132	2	5500	5500;5551		29.291	10.451	1	1108400			19395	641	10954	10955	24530;24531	24530					0.09367503063390359
KPSGQRRFLK	10	Unmodified	_KPSGQRRFLK_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.7851867675781	3	406.247285	1215.72002	-0.10302	-4.1851E-05	0.64279	0.00026113	0.53977	0.00021928	406.24758606471437	24.08	0.79753	24.008	23.646	24.443	-0.072559					63	26	3	0	0	0	0.31825	1	3627	3627		3.8459	3.8459	1	326380			19396	3451	10955	10956	24532	24532					0.12079296028105091
KPSGTTKSL	9	Unmodified	_KPSGTTKSL_					0	0	0		GIGYF2|p.I1041Lfs*9|1|0.12|ENSG00000204120|chr2:232844390-232844390|A/-|frameshift_variant;nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	GIGYF2|p.I1041Lfs*9|1|0.12|ENSG00000204120|chr2:232844390-232844390|A/-|frameshift_variant	GIGYF2|p.I1041Lfs*9|1|0.12|ENSG00000204120|chr2:232844390-232844390|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.7663269042969	2	459.766374	917.518196	-0.2435	-0.00011195	0.14626	6.7244E-05	-0.097239	-4.4707E-05	459.7663673188147	13.094	0.7393	12.995	12.869	13.608	-0.099291					73	25	4	0	0	0	0.33719	1	410	410		3.2813	0.97858	1	565220			19397	8198	10956	10957	24533	24533					0.056137675519039476
KPSGTTKSL	9	Unmodified	_KPSGTTKSL_					0	0	0		GIGYF2|p.I1041Lfs*9|1|0.12|ENSG00000204120|chr2:232844390-232844390|A/-|frameshift_variant;nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	GIGYF2|p.I1041Lfs*9|1|0.12|ENSG00000204120|chr2:232844390-232844390|A/-|frameshift_variant	GIGYF2|p.I1041Lfs*9|1|0.12|ENSG00000204120|chr2:232844390-232844390|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7663269042969	2	459.766374	917.518196	-0.23458	-0.00010785	0.14098	6.4819E-05	-0.093596	-4.3032E-05	459.76635918037385	13.068	0.84043	13	12.819	13.66	-0.067495					77	29	3	0	0	0	0.19905	1	386	386		23.79	4.5328	1	495570			19398	8198	10956	10957	24534	24534					0.056137675519039476
KPSKPLRPCIQ	11	Unmodified	_KPSKPLRPCIQ_					0	0	0		ENSG00000173281|ENST00000310455|PPP1R3B	ENSG00000173281|ENST00000310455|PPP1R3B	ENSG00000173281|ENST00000310455|PPP1R3B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8712158203125	2	633.871182	1265.72781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.827	1	97.82	97.32	98.32	-0.0068283								0	0	0	0.37382	1	26196	26196		2.9952	0	1				19399	6714	10957	10958	24535	24535					0.1055768723338133
KPSLEREK	8	Unmodified	_KPSLEREK_					0	0	0			REV__ENST00000489430.1_1_1:228296601-228296928:-|nuORF	REV__ENST00000489430.1_1_1:228296601-228296928:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.78485107421875	2	493.785099	985.555644	0.20312	0.0001003	-0.034773	-1.717E-05	0.16834	8.3125E-05	493.7849858997751	18.251	1.5948	18.133	17.323	18.918	-0.11739					151	55	5	0	0	0	0.39068	1	1781	1781		20.454	2.3073	1	994920	+		19400	21592	10958	10959	24536	24536					0.06228858817519267
KPSLPFTSL	9	Unmodified	_KPSLPFTSL_					0	0	0		ENST00000473378.1_1_X:70331248-70331389:-|nuORF;ENST00000276110.6_1_X:70331245-70331389:-|nuORF;ENST00000512747.3_1_X:70329223-70331389:-|nuORF;ENSG00000147168|ENST00000374202|IL2RG	ENST00000473378.1_1_X:70331248-70331389:-|nuORF	ENST00000473378.1_1_X:70331248-70331389:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.28704833984375	2	495.286943	988.559333	0.4016	0.00019891	0.16691	8.267E-05	0.56852	0.00028158	495.2868508020999	58.923	1.2341	58.923	58.468	59.702	0					125	42	5	0	0	0	0.0023895	6	14355	14253;14305;14355;14405;14467;14520		107.1	53.267	1	3088200			19401	4753	10959	10960	24537;24538;24539;24540;24541;24542	24539					0.06459528591392427
KPSLPFTSL	9	Unmodified	_KPSLPFTSL_					0	0	0		ENST00000473378.1_1_X:70331248-70331389:-|nuORF;ENST00000276110.6_1_X:70331245-70331389:-|nuORF;ENST00000512747.3_1_X:70329223-70331389:-|nuORF;ENSG00000147168|ENST00000374202|IL2RG	ENST00000473378.1_1_X:70331248-70331389:-|nuORF	ENST00000473378.1_1_X:70331248-70331389:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.28717041015625	2	495.286943	988.559333	0.45361	0.00022467	0.14096	6.9816E-05	0.59458	0.00029449	495.28682941571776	58.727	1.1003	58.818	58.474	59.574	0.091301					133	38	5	0	0	0	0.0023895	5	14267	14217;14267;14319;14368;14423		107.1	53.267	1	3391800			19402	4753	10959	10960	24543;24544;24545;24546;24547	24544					0.06459528591392427
KPSLPFTSL	9	Unmodified	_KPSLPFTSL_					0	0	0		ENST00000473378.1_1_X:70331248-70331389:-|nuORF;ENST00000276110.6_1_X:70331245-70331389:-|nuORF;ENST00000512747.3_1_X:70329223-70331389:-|nuORF;ENSG00000147168|ENST00000374202|IL2RG	ENST00000473378.1_1_X:70331248-70331389:-|nuORF	ENST00000473378.1_1_X:70331248-70331389:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.28704833984375	2	495.286943	988.559333	0.46033	0.000228	0.13368	6.6212E-05	0.59402	0.00029421	495.2868274933713	58.907	1.287	58.892	58.303	59.59	-0.014271					130	45	5	0	0	0	0.00051734	4	14291	14244;14291;14337;14391		128.93	64.696	1	3556300			19403	4753	10959	10960	24548;24549;24550;24551	24549					0.06459528591392427
KPSPKTIAF	9	Unmodified	_KPSPKTIAF_					0	0	0		ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.29510498046875	2	494.794935	987.575317	0.59594	0.00029487	0.32764	0.00016212	0.92358	0.00045698	494.7950302119916	29.173	1.3495	29.173	28.791	30.141	0					101	48	4	0	0	0	0.20881	1	5308	5308		21.537	9.0054	1	902080			19404	4781	10960	10961	24552	24552					0.08103234828286077
KPSPKTIAF	9	Unmodified	_KPSPKTIAF_					0	0	0		ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.29541015625	2	494.794935	987.575317	0.42921	0.00021237	0.62277	0.00030814	1.052	0.00052051	494.7952407709351	29.174	1.0346	29.187	28.769	29.803	0.012266					88	35	3	0	0	0	0.22143	1	5291	5291		24.991	11.483	1	835890			19405	4781	10960	10961	24553	24553					0.08103234828286077
KPSPKTIAF	9	Unmodified	_KPSPKTIAF_					0	0	0		ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2953796386719	2	494.794935	987.575317	0.1996	9.8759E-05	0.62225	0.00030789	0.82185	0.00040665	494.7951479184814	29.223	1.2408	29.237	28.879	30.12	0.013475					103	43	4	0	0	0	0.23235	1	5293	5293		21.537	9.0054	1	829130			19406	4781	10960	10961	24554	24554					0.08103234828286077
KPSPLGDVR	9	Unmodified	_KPSPLGDVR_					0	0	0			REV__ENSG00000007968|ENST00000361729|E2F2	REV__ENSG00000007968|ENST00000361729|E2F2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.77984619140625	2	484.779816	967.545079	0.19249	9.3313E-05	1.0065	0.00048791	1.1989	0.00058122	484.77980316797596	16.307	1.0333	16.244	15.67	16.703	-0.062534					80	35	4	0	0	0	0.24636	1	1311	1311		16.149	0	1	119950	+		19407	13394	10961	10962	24555	24555					0.060008761631024754
KPSRDLLRV	9	Unmodified	_KPSRDLLRV_					0	0	0			REV__ENSG00000144815|ENST00000273347|NXPE3	REV__ENSG00000144815|ENST00000273347|NXPE3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2623901367188	2	542.33529	1082.65603	0.1281	6.9473E-05	-0.45561	-0.00024709	-0.32751	-0.00017762	542.3351189885	12.811	0.14903	12.811	12.751	12.9	0					8	4	2	0	0	0	0.25622	1	256	256		7.2892	1.5574	1	16352	+		19408	16261	10962	10963	24556	24556					0.1180051587118669
KPSSGGRRR	9	Unmodified	_KPSSGGRRR_					0	0	0		ENSG00000100226|ENST00000216044|GTPBP1	ENSG00000100226|ENST00000216044|GTPBP1	ENSG00000100226|ENST00000216044|GTPBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7751159667969	2	500.791581	999.568609	0.20087	0.00010059	1.6531	0.00082785	1.8539	0.00092844	500.7922918754494	26.082	0.58694	26.082	25.823	26.41	0					50	20	3	0	0	0	0.074552	3	4229	4229;4275;4316		43.772	16.144	1	633180			19409	1547	10963	10964	24557;24558;24559	24557					0.06880734720277815
KPSSGGRRR	9	Unmodified	_KPSSGGRRR_					0	0	0		ENSG00000100226|ENST00000216044|GTPBP1	ENSG00000100226|ENST00000216044|GTPBP1	ENSG00000100226|ENST00000216044|GTPBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7933349609375	2	500.791581	999.568609	0.1532	7.6719E-05	2.1806	0.001092	2.3338	0.0011688	500.7923905741686	26.048	0.68346	26.009	25.75	26.433	-0.03867					66	23	5	0	0	0	0.069366	2	4223	4223;4279		45.7	18.816	1	699860			19410	1547	10963	10964	24560;24561	24560					0.06880734720277815
KPSSRTQI	8	Unmodified	_KPSSRTQI_					0	0	0		ENST00000322315.5_1_19:3590178-3593283:+|nuORF	ENST00000322315.5_1_19:3590178-3593283:+|nuORF	ENST00000322315.5_1_19:3590178-3593283:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7642822265625	2	458.764166	915.513779	-0.26912	-0.00012346	0.33359	0.00015304	0.06447	2.9577E-05	458.76426364354086	13.808	0.61256	13.703	13.41	14.023	-0.10466					56	21	4	0	0	0	0.34272	1	543	543		7.9102	0	1	156580			19411	9390	10964	10965	24562	24562					0.05264303129013115
KPSSTTPRL	9	Unmodified	_KPSSTTPRL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7850646972656	2	493.785099	985.555644	0.28354	0.00014001	-0.16619	-8.2064E-05	0.11735	5.7946E-05	493.78494468142713	18.094	1.6816	18.094	17.242	18.923	0					150	58	5	0	0	0	0.022205	4	1834	1749;1792;1834;1879		63.227	19.752	1	842220			19412	638	10965	10966	24563;24564;24565;24566	24565					0.062288588175078985
KPSSTTPRL	9	Unmodified	_KPSSTTPRL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7850646972656	2	493.785099	985.555644	0.20312	0.0001003	-0.034773	-1.717E-05	0.16834	8.3125E-05	493.7849858997751	18.251	1.5948	18.133	17.323	18.918	-0.11739					151	55	5	0	0	0	0.032589	3	1879	1829;1879;1924		59.368	17.413	1	994920			19413	638	10965	10966	24567;24568;24569	24568					0.062288588175078985
KPSSTTPRL	9	Unmodified	_KPSSTTPRL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7850646972656	2	493.785099	985.555644	0.095847	4.7328E-05	-0.020726	-1.0234E-05	0.075121	3.7094E-05	493.78500879965094	18.284	1.6265	18.226	17.36	18.986	-0.058174					145	57	5	0	0	0	0.04299	3	1883	1788;1831;1883		55.503	21.101	1	982380			19414	638	10965	10966	24570;24571;24572	24572					0.062288588175078985
KPSTKALVL	9	Unmodified	_KPSTKALVL_					0	0	0		nc|ENSG00000113456|O60671-2|RAD1;ENSG00000113456|ENST00000382038|RAD1	nc|ENSG00000113456|O60671-2|RAD1	nc|ENSG00000113456|O60671-2|RAD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2287902832031	2	478.810585	955.606617	-0.06288	-3.0107E-05	0.38973	0.00018661	0.32685	0.0001565	478.8110011429151	28.52	0.83745	28.52	28.008	28.845	0					42	28	2	0	0	0	0.24636	1	5003	5003		11.495	5.2889	1	136920			19415	2504	10966	10967	24573	24573					0.12703807862362737
KPSTKALVL	9	Unmodified	_KPSTKALVL_					0	0	0		nc|ENSG00000113456|O60671-2|RAD1;ENSG00000113456|ENST00000382038|RAD1	nc|ENSG00000113456|O60671-2|RAD1	nc|ENSG00000113456|O60671-2|RAD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	478.810585	955.606617	0.039736	1.9026E-05	0.074795	3.5813E-05	0.11453	5.4839E-05	478.81077987668283	28.388	0.60541	28.384	27.994	28.599	-0.0042572	-0.068241	-0.00015996	NaN	11.495	41	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197300			19416	2504	10966	10967							0.12703807862362737
KPTAPQRAL	9	Unmodified	_KPTAPQRAL_					0	0	0		ENSG00000068831|ENST00000394432|RASGRP2;nc|ENSG00000068831|Q7LDG7-4|RASGRP2;nc|ENSG00000068831|Q7LDG7-2|RASGRP2;RASGRP2|p.I224M|1|0.26|ENSG00000068831|chr11:64739660-64739660|G/C|missense_variant;ENST00000464324.5_1_11:64494776-64507712:-|nuORF;ENST00000421556.5_1_11:64494776-64511570:-|nuORF	ENSG00000068831|ENST00000394432|RASGRP2	ENSG00000068831|ENST00000394432|RASGRP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.29547119140625	2	491.295633	980.576714	0.23554	0.00011572	-0.79303	-0.00038961	-0.55749	-0.00027389	491.29540943541787	18.048	0.81538	18.048	17.69	18.505	0					50	27	2	0	0	0	0.2719	1	1817	1817		13.042	2.243	1	54298			19417	890	10967	10968	24574	24574					0.08564868917039803
KPTAPQRAL	9	Unmodified	_KPTAPQRAL_					0	0	0		ENSG00000068831|ENST00000394432|RASGRP2;nc|ENSG00000068831|Q7LDG7-4|RASGRP2;nc|ENSG00000068831|Q7LDG7-2|RASGRP2;RASGRP2|p.I224M|1|0.26|ENSG00000068831|chr11:64739660-64739660|G/C|missense_variant;ENST00000464324.5_1_11:64494776-64507712:-|nuORF;ENST00000421556.5_1_11:64494776-64511570:-|nuORF	ENSG00000068831|ENST00000394432|RASGRP2	ENSG00000068831|ENST00000394432|RASGRP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.29522705078125	2	491.295633	980.576714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.19	1	18.073	17.573	18.573	-0.11739								0	0	0	0.21353	1	1859	1859		18.146	0.011366	1				19418	890	10967	10968	24575	24575					0.08564868917039803
KPTAPQRAL	9	Unmodified	_KPTAPQRAL_					0	0	0		ENSG00000068831|ENST00000394432|RASGRP2;nc|ENSG00000068831|Q7LDG7-4|RASGRP2;nc|ENSG00000068831|Q7LDG7-2|RASGRP2;RASGRP2|p.I224M|1|0.26|ENSG00000068831|chr11:64739660-64739660|G/C|missense_variant;ENST00000464324.5_1_11:64494776-64507712:-|nuORF;ENST00000421556.5_1_11:64494776-64511570:-|nuORF	ENSG00000068831|ENST00000394432|RASGRP2	ENSG00000068831|ENST00000394432|RASGRP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2961120605469	2	491.295633	980.576714	0.071801	3.5275E-05	-0.57786	-0.0002839	-0.50606	-0.00024862	491.29557353938657	18.239	0.69297	18.181	17.846	18.539	-0.058174					49	24	3	0	0	0	0.2719	1	1875	1875		13.042	3.6593	1	75732			19419	890	10967	10968	24576	24576					0.08564868917039803
KPTCRLVP	8	Unmodified	_KPTCRLVP_					0	0	0		nc|ENSG00000178150|Q8NC26-2|ZNF114;ENSG00000178150|ENST00000595607|ZNF114	nc|ENSG00000178150|Q8NC26-2|ZNF114	nc|ENSG00000178150|Q8NC26-2|ZNF114	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2767333984375	2	457.26803	912.521507	-0.77092	-0.00035252	0.55403	0.00025334	-0.21689	-9.9176E-05	457.26823669817344	35.11	0.71571	35.187	34.78	35.495	0.077381					37	25	2	0	0	0	0.44145	1	7044	7044		8.7454	0.15213	1	146460			19420	7038	10968	10969	24577	24577					0.06174739124912776
KPTDEKLREL	10	Unmodified	_KPTDEKLREL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A;SMC1A|p.K734Nfs*8|1|0.31|ENSG00000072501|chrX:53403888-53403888|T/-|frameshift_variant	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.8878479003906	3	410.23471	1227.6823	-0.22043	-9.0429E-05	-0.40959	-0.00016803	-0.63002	-0.00025845	410.2344398348135	23.613	0.5511	23.613	23.336	23.887	0					44	18	3	0	0	0	0.31609	1	3488	3488		12.856	4.9105	1	147880			19421	983	10969	10970	24578	24578					0.07756740251988958
KPTDEKLREL	10	Unmodified	_KPTDEKLREL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A;SMC1A|p.K734Nfs*8|1|0.31|ENSG00000072501|chrX:53403888-53403888|T/-|frameshift_variant	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.8878173828125	3	410.23471	1227.6823	0.18278	7.4982E-05	-0.70202	-0.00028799	-0.51924	-0.00021301	410.23431232378806	23.805	0.48719	23.766	23.506	23.993	-0.038927					40	16	3	0	0	0	0.32034	1	3494	3494		4.7159	1.9807	1	157550			19422	983	10969	10970	24579	24579					0.07756740251988958
KPTDEKLREL	10	Unmodified	_KPTDEKLREL_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A;SMC1A|p.K734Nfs*8|1|0.31|ENSG00000072501|chrX:53403888-53403888|T/-|frameshift_variant	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	410.23471	1227.6823	0.026817	1.1001E-05	-0.66473	-0.0002727	-0.63791	-0.00026169	410.23432990442967	23.732	0.56705	23.66	23.368	23.935	-0.072559	-0.020047	-9.5309E-05	NaN	17.049	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148270			19423	983	10969	10970							0.07756740251988958
KPTDKLRAL	9	Unmodified	_KPTDKLRAL_					0	0	0		nc|ENSG00000179889|Q6P996-3|PDXDC1;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;ENST00000529118.1_1_16:70051886-70057359:-|nuORF;nc|ENSG00000179889|Q6P996-2|PDXDC1;ENST00000530079.5_1_16:70030360-70072929:-|nuORF;nc|ENSG00000255185|Q6P474|PDXDC2P;ENST00000531894.5_1_16:70030360-70099817:-|nuORF;ENST00000570001.5_1_16:15069056-15125764:+|nuORF	nc|ENSG00000179889|Q6P996-3|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.7877197265625	2	521.324391	1040.63423	0.30673	0.00015991	0.2954	0.000154	0.60213	0.00031391	521.3246258472304	23.859	0.63325	23.859	23.48	24.113	0					40	21	3	0	0	0	0.24787	1	3531	3531		15.248	6.5031	1	151110			19424	7150	10970	10971	24580	24580					0.11553711122610366
KPTDKLRAL	9	Unmodified	_KPTDKLRAL_					0	0	0		nc|ENSG00000179889|Q6P996-3|PDXDC1;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;ENST00000529118.1_1_16:70051886-70057359:-|nuORF;nc|ENSG00000179889|Q6P996-2|PDXDC1;ENST00000530079.5_1_16:70030360-70072929:-|nuORF;nc|ENSG00000255185|Q6P474|PDXDC2P;ENST00000531894.5_1_16:70030360-70099817:-|nuORF;ENST00000570001.5_1_16:15069056-15125764:+|nuORF	nc|ENSG00000179889|Q6P996-3|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.7876586914062	2	521.324391	1040.63423	0.34205	0.00017832	0.30731	0.00016021	0.64936	0.00033853	521.3246164883591	23.982	0.61919	23.909	23.614	24.234	-0.072559					34	20	2	0	0	0	0.25612	1	3570	3570		8.1555	8.1555	1	158920			19425	7150	10970	10971	24581	24581					0.11553711122610366
KPTDKLRAL	9	Unmodified	_KPTDKLRAL_					0	0	0		nc|ENSG00000179889|Q6P996-3|PDXDC1;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;ENST00000529118.1_1_16:70051886-70057359:-|nuORF;nc|ENSG00000179889|Q6P996-2|PDXDC1;ENST00000530079.5_1_16:70030360-70072929:-|nuORF;nc|ENSG00000255185|Q6P474|PDXDC2P;ENST00000531894.5_1_16:70030360-70099817:-|nuORF;ENST00000570001.5_1_16:15069056-15125764:+|nuORF	nc|ENSG00000179889|Q6P996-3|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.78759765625	2	521.324391	1040.63423	0.44244	0.00023065	0.26977	0.00014064	0.71221	0.00037129	521.3244825532714	24	0.54122	23.961	23.681	24.222	-0.038927					39	18	3	0	0	0	0.24787	1	3575	3575		15.248	6.5031	1	160400			19426	7150	10970	10971	24582	24582					0.11553711122610366
KPTDRPSSL	9	Unmodified	_KPTDRPSSL_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.6716613769531	2	500.774731	999.534909	0.27488	0.00013765	0.025699	1.287E-05	0.30058	0.00015052	500.77436181166763	17.838	0.61785	17.838	17.598	18.216	0					41	20	3	0	0	0	0.22179	1	1751	1751		26.021	5.6062	1	119880			19427	7926	10971	10972	24583	24583					0.03512268437862076
KPTDRPSSL	9	Unmodified	_KPTDRPSSL_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.67218017578125	2	500.774731	999.534909	0.16069	8.0471E-05	-0.059795	-2.9944E-05	0.1009	5.0527E-05	500.7744067529977	18.02	0.52077	17.903	17.663	18.184	-0.11739					31	17	2	0	0	0	0.22701	1	1790	1790		18.373	6.7328	1	130600			19428	7926	10971	10972	24584	24584					0.03512268437862076
KPTERLPPNPL	11	Unmodified	_KPTERLPPNPL_					0	0	0			REV__SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|13|1|sense	REV__SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|13|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7581787109375	3	421.24695	1260.71902	-0.39551	-0.00016661	0.79404	0.00033449	0.39852	0.00016788	421.24718041479525	12.596	0.23653	12.596	12.433	12.669	0					17	7	3	0	0	0	0.3333	1	153	153		1.3296	0.70282	1	17023	+		19429	23314	10972	10973	24585	24585					0.09909036868566545
KPTERLPPNPL	11	Unmodified	_KPTERLPPNPL_					0	0	0			REV__SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|13|1|sense	REV__SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|13|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7582092285156	3	421.24695	1260.71902	-0.38083	-0.00016042	1.3309	0.00056065	0.9501	0.00040022	421.2472534730131	12.646	0.23619	12.578	12.434	12.671	-0.067496					12	7	2	0	0	0	0.3333	1	156	156		1.3296	0.70282	1	12009	+		19430	23314	10972	10973	24586	24586					0.09909036868566545
KPTFFQKKLK	10	Unmodified	_KPTFFQKKLK_					0	0	0			REV__nc|ENSG00000101868|P09884|POLA1	REV__nc|ENSG00000101868|P09884|POLA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.3618774414062	2	632.892441	1263.77033	0.42481	0.00026886	-0.31154	-0.00019717	0.11328	7.1692E-05	632.892195447207	98.317	0.34303	98.31	98.132	98.475	-0.0068283					55	38	2	0	0	0	0.32137	1	26290	26290		0.35063	0.35063	1	239420	+		19431	14291	10973	10974	24587	24587					0.14899405633263996
KPTFFQKKLK	10	Unmodified	_KPTFFQKKLK_					0	0	0			REV__nc|ENSG00000101868|P09884|POLA1	REV__nc|ENSG00000101868|P09884|POLA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	632.892441	1263.77033	0.16348	0.00010347	0.14731	9.3229E-05	0.31079	0.0001967	632.892590956519	98.204	0.24934	98.266	98.181	98.43	0.061516	-0.0087915	0.00041539	NaN	0.35063	35	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255640	+		19432	14291	10973	10974							0.14899405633263996
KPTGARPPLI	10	Unmodified	_KPTGARPPLI_					0	0	0			REV__nc|ENSG00000070729|Q14028-2|CNGB1	REV__nc|ENSG00000070729|Q14028-2|CNGB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.309814453125	2	525.326934	1048.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.045	1	96.122	95.622	96.622	0.077408								0	0	0	0.37807	1	25667	25667		2.9952	0.69251	1		+		19433	13731	10974	10975	24588	24588					0.11694014985209833
KPTGARPPLI	10	Unmodified	_KPTGARPPLI_					0	0	0			REV__nc|ENSG00000070729|Q14028-2|CNGB1	REV__nc|ENSG00000070729|Q14028-2|CNGB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3096923828125	2	525.326934	1048.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.718	1	96.788	96.288	97.288	0.070465								0	0	0	0.37807	1	25861	25861		2.9952	0.69251	1		+		19434	13731	10974	10975	24589	24589					0.11694014985209833
KPTGTPKAL	9	Unmodified	_KPTGTPKAL_					0	0	0		nc|ENSG00000074416|Q99685-2|MGLL;nc|ENSG00000074416|Q99685|MGLL;ENSG00000074416|ENST00000265052|MGLL;ENST00000479967.5_1_3:127434467-127541990:-|nuORF	nc|ENSG00000074416|Q99685-2|MGLL	nc|ENSG00000074416|Q99685-2|MGLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7791442871094	2	456.779285	911.544017	-0.0025017	-1.1427E-06	-0.67268	-0.00030727	-0.67518	-0.00030841	456.77922534377325	16.512	0.59718	16.512	16.123	16.72	0					44	20	3	0	0	0	0.11201	1	1352	1352		36.506	9.6225	1	133480			19435	1021	10975	10976	24590	24590					0.08470661794183343
KPTGTPKAL	9	Unmodified	_KPTGTPKAL_					0	0	0		nc|ENSG00000074416|Q99685-2|MGLL;nc|ENSG00000074416|Q99685|MGLL;ENSG00000074416|ENST00000265052|MGLL;ENST00000479967.5_1_3:127434467-127541990:-|nuORF	nc|ENSG00000074416|Q99685-2|MGLL	nc|ENSG00000074416|Q99685-2|MGLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7791748046875	2	456.779285	911.544017	-0.056296	-2.5715E-05	0.22146	0.00010116	0.16517	7.5446E-05	456.7792545124834	16.641	0.55844	16.527	16.191	16.749	-0.11434					42	19	3	0	0	0	0.04299	2	1393	1342;1393		55.503	9.4818	1	167930			19436	1021	10975	10976	24591;24592	24592					0.08470661794183343
KPTHSAKRVSK	11	Unmodified	_KPTHSAKRVSK_					0	0	0			REV__ENSG00000171490|ENST00000571133|RSL1D1	REV__ENSG00000171490|ENST00000571133|RSL1D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8697509765625	2	619.870028	1237.7255	0.20348	0.00012613	-0.46722	-0.00028961	-0.26374	-0.00016348	619.8692710448544	97.491	1.1283	97.485	96.973	98.101	-0.0055466					232	118	3	0	0	0	0.46655	1	26220	26220		2.4985	0.84587	1	379940	+		19437	17641	10976	10977	24593	24593					0.11614974819917734
KPTHVNMNR	9	Unmodified	_KPTHVNMNR_					0	0	0		ENSG00000180116|ENST00000324616|C12orf40;nc|ENSG00000180116|Q86WS4-2|REDIC1	ENSG00000180116|ENST00000324616|C12orf40	ENSG00000180116|ENST00000324616|C12orf40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.79931640625	2	548.78765	1095.56075	0.18505	0.00010155	-0.76561	-0.00042016	-0.58056	-0.0003186	548.7872975273651	15.159	0.6475	15.094	14.926	15.573	-0.064413					43	21	3	0	0	0	0.31417	1	952	952		6.7232	2.3939	1	237520			19438	7167	10977	10978	24594	24594					0.016788394084642277
KPTHVNMNR	9	Unmodified	_KPTHVNMNR_					0	0	0		ENSG00000180116|ENST00000324616|C12orf40;nc|ENSG00000180116|Q86WS4-2|REDIC1	ENSG00000180116|ENST00000324616|C12orf40	ENSG00000180116|ENST00000324616|C12orf40	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	548.78765	1095.56075	0.18505	0.00010155	-0.76561	-0.00042016	-0.58056	-0.0003186	548.7872975273651	15.159	0.6475	15.094	14.926	15.573	-0.064413	0.054497	-0.00018281	NaN	6.7232	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237520			19439	7167	10977	10978							0.016788394084642277
KPTHVVVTL	9	Unmodified	_KPTHVVVTL_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.3081970214844	2	497.30821	992.601866	0.22148	0.00011014	1.4643	0.0007282	1.6858	0.00083834	497.3081796059092	31.208	0.66245	31.208	30.948	31.61	0					57	23	4	0	0	0	0.064268	1	5804	5804		47.594	5.7548	1	331920			19440	4833	10978	10979	24595	24595					0.10526923719623937
KPTHVVVTL	9	Unmodified	_KPTHVVVTL_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.30810546875	2	497.30821	992.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.148	1	31.189	30.689	31.689	0.040279								0	0	0	0.080859	1	5787	5787		51.63	9.7902	1				19441	4833	10978	10979	24596	24596					0.10526923719623937
KPTHVVVTL	9	Unmodified	_KPTHVVVTL_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.3084411621094	2	497.30821	992.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.197	1	31.24	30.74	31.74	0.042364								0	0	0	0.14229	1	5802	5802		36.506	2.1045	1				19442	4833	10978	10979	24597	24597					0.10526923719623937
KPTHVVVTL	9	Unmodified	_KPTHVVVTL_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.30828857421875	2	497.30821	992.601866	0.28656	0.00014251	1.5021	0.00074701	1.7887	0.00088952	497.3082525897271	31.158	0.52044	31.199	30.959	31.479	0.040991					47	18	3	0	0	0	0.074552	1	5782	5782		43.772	1.9328	1	310530			19443	4833	10978	10979	24598	24598					0.10526923719623937
KPTIETLGI	9	Unmodified	_KPTIETLGI_					0	0	0			REV__NCOA2|p.P760T|1|0.24|ENSG00000140396|chr8:70156087-70156087|G/T|missense_variant	REV__NCOA2|p.P760T|1|0.24|ENSG00000140396|chr8:70156087-70156087|G/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.95880126953125	2	486.292225	970.569897	0.23015	0.00011192	-1.8082	-0.00087932	-1.5781	-0.0007674	486.2911642399927	91.736	0.33197	91.736	91.534	91.866	0					30	23	2	0	0	0	0.24688	1	24348	24348		14.838	3.198	1	93864	+		19444	23272	10979	10980	24599	24599					0.08343511245811897
KPTIVSNVS	9	Unmodified	_KPTIVSNVS_					0	0	0		ENST00000558117.1_1_15:41769416-41770886:+|nuORF	ENST00000558117.1_1_15:41769416-41770886:+|nuORF	ENST00000558117.1_1_15:41769416-41770886:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7921142578125	2	472.7742	943.533846	0.40258	0.00019033	-1.24	-0.00058626	-0.83745	-0.00039592	472.77362598585364	21.3	0.32078	21.19	21.007	21.328	-0.11003					18	10	2	0	0	0	0.24848	1	2780	2780		13.906	3.0821	1	34183			19445	11871	10980	10981	24600	24600					0.05982054068954312
KPTIVSNVS	9	Unmodified	_KPTIVSNVS_					0	0	0		ENST00000558117.1_1_15:41769416-41770886:+|nuORF	ENST00000558117.1_1_15:41769416-41770886:+|nuORF	ENST00000558117.1_1_15:41769416-41770886:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	472.7742	943.533846	0.19424	9.183E-05	-0.51693	-0.00024439	-0.32269	-0.00015256	472.774043565234	21.146	0.37504	21.146	21.026	21.401	0	-0.023566	0.00045581	NaN	9.3831	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44934			19446	11871	10980	10981							0.05982054068954312
KPTKAARQ	8	Unmodified	_KPTKAARQ_					0	0	0		ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	ENSG00000183921|ENST00000602312|SDR42E2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7767028808594	2	450.274701	898.534849	0.28532	0.00012847	-0.28611	-0.00012883	-0.00079307	-3.571E-07	450.2744885807236	82.737	1.3467	82.81	82.452	83.799	0.073097					123	52	3	0	0	0	0.46022	1	21780	21780		2.3027	0	1	11782000			19447	7420	10981	10982	24601	24601					0.08152313228504227
KPTLIEFYE	9	Unmodified	_KPTLIEFYE_					0	0	0			REV__ENSG00000164116|ENST00000506455|GUCY1A1	REV__ENSG00000164116|ENST00000506455|GUCY1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3023681640625	2	570.30279	1138.59103	0.14938	8.519E-05	-0.74183	-0.00042307	-0.59245	-0.00033788	570.3023726082926	25.236	0.78584	25.18	24.918	25.704	-0.055931					66	27	3	0	0	0	0.33276	1	4035	4035		3.9444	3.9444	1	468190	+		19448	17127	10982	10983	24602	24602					0.02727476554673558
KPTLLSLYE	9	Unmodified	_KPTLLSLYE_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3041381835938	2	532.305332	1062.59611	0.47376	0.00025218	-1.6935	-0.00090146	-1.2197	-0.00064927	532.3037502480412	17.295	0.32564	17.295	17.151	17.477	0					21	11	3	0	0	0	0.33508	1	1601	1601		3.5965	0.31518	1	40005			19449	1214	10983	10984	24603	24603					0.0673178041729443
KPTLLSLYE	9	Unmodified	_KPTLLSLYE_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	532.305332	1062.59611	0.16782	8.933E-05	-2.7194	-0.0014476	-2.5516	-0.0013582	532.3038838806642	17.499	0.34232	17.382	17.231	17.573	-0.11739	0.035246	-0.00019119	NaN	3.5965	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44990			19450	1214	10983	10984							0.0673178041729443
KPTMRPPIPY	10	Unmodified	_KPTMRPPIPY_					0	0	0			REV__nc|ENSG00000119608|Q3B8N5|PROX2	REV__nc|ENSG00000119608|Q3B8N5|PROX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3345947265625	2	600.333901	1198.65325	0.70395	0.0004226	0.49544	0.00029743	1.1994	0.00072003	600.3340324848331	84.504	1.742	84.504	84.163	85.905	0					135	66	3	0	0	0	0.38515	1	22236	22236		6.2058	1.4498	1	1184300	+		19451	15048	10984	10985	24604	24604					0.06186924422013362
KPTNRLLPP	9	Unmodified	_KPTNRLLPP_					0	0	0			REV__ENST00000531381.1_1_11:121962253-121962307:-|nuORF	REV__ENST00000531381.1_1_11:121962253-121962307:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3173828125	2	518.319109	1034.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.519	1	74.488	73.988	74.988	-0.030655								0	0	0	0.24522	1	19086	19086		7.9102	3.5809	1		+		19452	22021	10985	10986	24605	24605					0.10773728468188892
KPTNRLLPP	9	Unmodified	_KPTNRLLPP_					0	0	0			REV__ENST00000531381.1_1_11:121962253-121962307:-|nuORF	REV__ENST00000531381.1_1_11:121962253-121962307:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3173828125	2	518.319109	1034.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.674	1	74.642	74.142	75.142	-0.031487								0	0	0	0.24522	1	19133	19133		7.9102	3.5809	1		+		19453	22021	10985	10986	24606	24606					0.10773728468188892
KPTPQLKPIE	10	Unmodified	_KPTPQLKPIE_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;nc|ENSG00000117676|Q15418-3|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8431396484375	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.08	1	112.09	111.59	112.59	0.0131								0	0	0	0.37044	1	29177	29177		6.2058	1.8765	1				19454	2805	10986	10987	24607	24607					0.10690847091291289
KPTPRELNRK	10	Unmodified	_KPTPRELNRK_					0	0	0			REV__nc|ENSG00000158079|A2A3K4-2|PTPDC1	REV__nc|ENSG00000158079|A2A3K4-2|PTPDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8687133789062	2	619.870028	1237.7255	0.16663	0.00010329	-0.67874	-0.00042073	-0.5121	-0.00031744	619.8689631731354	92.921	1.0228	92.921	92.557	93.58	0					123	87	2	0	0	0	0.40262	1	24877	24877		2.9952	0.49676	1	134500	+		19455	23043	10987	10988	24608	24608					0.11614974819917734
KPTPRELNRK	10	Unmodified	_KPTPRELNRK_					0	0	0			REV__nc|ENSG00000158079|A2A3K4-2|PTPDC1	REV__nc|ENSG00000158079|A2A3K4-2|PTPDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.86962890625	2	619.870028	1237.7255	-0.057748	-3.5796E-05	-0.26006	-0.0001612	-0.31781	-0.000197	619.8694425647374	97.597	0.96609	97.597	97.024	97.991	0					189	100	3	0	0	0	0.41085	1	26152	26152		1.4819	0.28856	1	195890	+		19456	23043	10987	10988	24609	24609					0.11614974819917734
KPTPRELNRK	10	Unmodified	_KPTPRELNRK_					0	0	0			REV__nc|ENSG00000158079|A2A3K4-2|PTPDC1	REV__nc|ENSG00000158079|A2A3K4-2|PTPDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.421630859375	2	619.870028	1237.7255	0.16663	0.00010329	-0.67874	-0.00042073	-0.5121	-0.00031744	619.8689631731354	92.921	1.0228	92.921	92.557	93.58	0					123	87	2	0	0	0	0.32132	1	24778	24778		1.4819	0.15237	1	134500	+		19457	23043	10987	10988	24610	24610					0.11614974819917734
KPTPRELNRK	10	Unmodified	_KPTPRELNRK_					0	0	0			REV__nc|ENSG00000158079|A2A3K4-2|PTPDC1	REV__nc|ENSG00000158079|A2A3K4-2|PTPDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8685913085938	2	619.870028	1237.7255	0.32312	0.00020029	-0.75074	-0.00046536	-0.42762	-0.00026507	619.8684087462731	93.756	0.61766	93.755	93.414	94.031	-0.00051117					65	45	2	0	0	0	0.38773	1	24913	24913		5.7319	0.43497	1	186880	+		19458	23043	10987	10988	24611	24611					0.11614974819917734
KPTQKLANHI	10	Unmodified	_KPTQKLANHI_					0	0	0			REV__nc|ENSG00000150347|Q14865-2|ARID5B	REV__nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8612670898438	2	575.340572	1148.66659	-0.17955	-0.0001033	4.4884	0.0025823	4.3088	0.002479	575.843679915679	100.1	0.17401	100.1	99.967	100.14	0					36	22	2	0	0	0	0.31794	1	26735	26735		8.1555	4.8742	1	106490	+		19459	16493	10988	10989	24612	24612					0.09820498525596122
KPTQKLANHI	10	Unmodified	_KPTQKLANHI_					0	0	0			REV__nc|ENSG00000150347|Q14865-2|ARID5B	REV__nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	575.340572	1148.66659	0.12895	7.4192E-05	4.1091	0.0023641	4.2381	0.0024383	575.8434781498217	100.02	0.21635	100.06	99.982	100.2	0.038994	-0.042703	9.7944E-05	NaN	8.1555	41	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95956	+		19460	16493	10988	10989							0.09820498525596122
KPTQKLANHI	10	Unmodified	_KPTQKLANHI_					0	0	0			REV__nc|ENSG00000150347|Q14865-2|ARID5B	REV__nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	575.340572	1148.66659	0.18559	0.00010677	3.6093	0.0020766	3.7949	0.0021833	575.8431857711341	100.14	0.21052	100.14	100.03	100.24	-0.006897	0.039234	-0.00047723	NaN	8.1555	42	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157210	+		19461	16493	10988	10989							0.09820498525596122
KPTRDRFGM	9	Unmodified	_KPTRDRFGM_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8299560546875	2	554.290025	1106.5655	0.60705	0.00033648	-0.1125	-6.2358E-05	0.49455	0.00027412	554.2899312864853	78.818	0.078514	78.818	78.749	78.828	0					4	2	2	0	0	0	0.25202	1	20402	20402		6.7232	0	1	34726	+		19462	14066	10989	10990	24613	24613					0.016477235512411426
KPTRKFAYL	9	Unmodified	_KPTRKFAYL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENSG00000142541|ENST00000391857|RPL13A;ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3349609375	2	562.334759	1122.65496	0.15215	8.5559E-05	-0.034132	-1.9194E-05	0.11802	6.6365E-05	562.3345918483419	26.398	0.68729	26.398	26.042	26.729	0					51	23	3	0	0	0	0.12279	1	4335	4335		34.932	23.292	1	225830			19463	4450;11378	10990	10991	24614	24614					0.09854301502264207
KPTRKFAYL	9	Unmodified	_KPTRKFAYL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENSG00000142541|ENST00000391857|RPL13A;ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3344116210938	2	562.334759	1122.65496	0.24262	0.00013643	-0.27593	-0.00015516	-0.033308	-1.873E-05	562.3344722765174	26.371	0.68294	26.332	26.037	26.72	-0.038671					53	23	3	0	0	0	0.053988	2	4337	4337;4385		51.415	23.786	1	207120			19464	4450;11378	10990	10991	24615;24616	24615					0.09854301502264207
KPTRKFAYL	9	Unmodified	_KPTRKFAYL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENSG00000142541|ENST00000391857|RPL13A;ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3345336914062	2	562.334759	1122.65496	0.38184	0.00021472	-0.4911	-0.00027616	-0.10926	-6.1441E-05	562.3344745599453	26.536	0.62895	26.513	26.212	26.841	-0.022238					50	21	3	0	0	0	0.020233	1	4372	4372		63.961	44.704	1	244070			19465	4450;11378	10990	10991	24617	24617					0.09854301502264207
KPTRKKQA	8	Unmodified	_KPTRKKQA_					0	0	0		ENSG00000144962|ENST00000351008|SPATA16	ENSG00000144962|ENST00000351008|SPATA16	ENSG00000144962|ENST00000351008|SPATA16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2287902832031	2	478.803626	955.592698	0.070786	3.3893E-05	-0.99533	-0.00047657	-0.92454	-0.00044267	478.80274183248804	28.646	0.37321	28.646	28.472	28.845	0					22	12	2	0	0	0	0.34294	1	5003	5003		7.2892	0	1	117670			19466	4626	10991	10992	24618	24618					0.11312575153931448
KPTRKKQA	8	Unmodified	_KPTRKKQA_					0	0	0		ENSG00000144962|ENST00000351008|SPATA16	ENSG00000144962|ENST00000351008|SPATA16	ENSG00000144962|ENST00000351008|SPATA16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	478.803626	955.592698	0.13505	6.4665E-05	-0.42832	-0.00020508	-0.29327	-0.00014042	478.8031684395102	28.669	0.3199	28.665	28.495	28.815	-0.0042572	0.0093903	0.00014817	NaN	7.2892	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103160			19467	4626	10991	10992							0.11312575153931448
KPTSRPNLNLK	11	Unmodified	_KPTSRPNLNLK_					0	0	0			REV__ENST00000432132.2_1_9:98909238-98910135:+|nuORF	REV__ENST00000432132.2_1_9:98909238-98910135:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3778686523438	2	634.377686	1266.74082	-0.065239	-4.1386E-05	-0.10892	-6.9098E-05	-0.17416	-0.00011048	634.3778659788805	103.61	1.2562	103.61	103.51	104.77	0					365	174	4	0	0	0	0.46475	1	27799	27799		2.7352	1.5419	1	44719000	+		19468	20956	10992	10993	24619	24619					0.11811841617145546
KPTSRPNLNLK	11	Unmodified	_KPTSRPNLNLK_					0	0	0			REV__ENST00000432132.2_1_9:98909238-98910135:+|nuORF	REV__ENST00000432132.2_1_9:98909238-98910135:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3798828125	2	634.377686	1266.74082	0.21813	0.00013838	-0.27728	-0.0001759	-0.059152	-3.7525E-05	634.3778279324298	111.28	0.45686	111.27	111.01	111.47	-0.013939					94	68	2	0	0	0	0.46475	1	28961	28961		2.7352	1.5419	1	307600	+		19469	20956	10992	10993	24620	24620					0.11811841617145546
KPTSRPNLNLK	11	Unmodified	_KPTSRPNLNLK_					0	0	0			REV__ENST00000432132.2_1_9:98909238-98910135:+|nuORF	REV__ENST00000432132.2_1_9:98909238-98910135:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3792724609375	2	634.377686	1266.74082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.76	1	104.76	104.26	105.26	0.0018463								0	0	0	0.37501	1	27805	27805		2.7352	0.23671	1		+		19470	20956	10992	10993	24621	24621					0.11811841617145546
KPTSRPNLNLK	11	Unmodified	_KPTSRPNLNLK_					0	0	0			REV__ENST00000432132.2_1_9:98909238-98910135:+|nuORF	REV__ENST00000432132.2_1_9:98909238-98910135:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3790283203125	2	634.377686	1266.74082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.93	1	104.93	104.43	105.43	0.0018463								0	0	0	0.37501	1	27838	27838		2.7352	1.2533	1		+		19471	20956	10992	10993	24622	24622					0.11811841617145546
KPTSRTQV	8	Unmodified	_KPTSRTQV_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7642822265625	2	458.764166	915.513779	-0.24882	-0.00011415	0.50668	0.00023245	0.25786	0.0001183	458.76429445706333	13.709	0.45514	13.709	13.537	13.992	0					26	15	2	0	0	0	0.33988	1	518	518		18.146	1.9972	1	110110			19472	1892	10993	10994	24623	24623					0.05264303129001746
KPTTSRVLV	9	Unmodified	_KPTTSRVLV_					0	0	0			REV__nc|ENSG00000156521|Q2T9J0-2|TYSND1	REV__nc|ENSG00000156521|Q2T9J0-2|TYSND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.292724609375	2	500.811116	999.60768	-0.62012	-0.00031056	0.40503	0.00020284	-0.21509	-0.00010772	500.8113471210795	35.139	0.62642	35.139	34.839	35.466	0					46	22	3	0	0	0	0.25323	1	7080	7080		10.074	2.1638	1	258260	+		19473	16752	10994	10995	24624	24624					0.10786022231275183
KPTTSRVLV	9	Unmodified	_KPTTSRVLV_					0	0	0			REV__nc|ENSG00000156521|Q2T9J0-2|TYSND1	REV__nc|ENSG00000156521|Q2T9J0-2|TYSND1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	500.811116	999.60768	-0.68455	-0.00034283	0.26272	0.00013157	-0.42183	-0.00021126	500.8112594736836	35.018	0.61016	35.093	34.843	35.454	0.075306	-0.0060973	-0.00016333	NaN	10.074	39	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306110	+		19474	16752	10994	10995							0.10786022231275183
KPTTSRVLV	9	Unmodified	_KPTTSRVLV_					0	0	0			REV__nc|ENSG00000156521|Q2T9J0-2|TYSND1	REV__nc|ENSG00000156521|Q2T9J0-2|TYSND1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	500.811116	999.60768	-0.65041	-0.00032573	0.62135	0.00031118	-0.029053	-1.455E-05	500.81141130978534	34.988	0.68751	35.065	34.78	35.467	0.077377	-0.033815	0.00019589	NaN	10.074	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249690	+		19475	16752	10994	10995							0.10786022231275183
KPTVTIRTRGA	11	Unmodified	_KPTVTIRTRGA_					0	0	0		ENSG00000173402|ENST00000308775|DAG1	ENSG00000173402|ENST00000308775|DAG1	ENSG00000173402|ENST00000308775|DAG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	400.5799865722656	3	400.578811	1198.7146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.88	1	103.89	103.39	104.39	0.0082703								0	0	0	0.37382	1	27601	27601		1.2148	0	1				19476	6719	10995	10996	24625	24625					0.12319572445653648
KPVEKSVQACF	11	Unmodified	_KPVEKSVQACF_					0	0	0			REV__ENSG00000101349|ENST00000353224|PAK5	REV__ENSG00000101349|ENST00000353224|PAK5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.7347412109375	3	412.553274	1234.63799	0.14446	5.9599E-05	-0.30791	-0.00012703	-0.16344	-6.743E-05	412.553065101205	42.489	0.88249	42.574	42.093	42.975	0.085201					64	31	3	0	0	0	0.33303	1	9361	9361		1.1098	0	1	504820	+		19477	14266	10996	10997	24626	24626					0.030060128341574455
KPVFCVRF	8	Unmodified	_KPVFCVRF_					0	0	0			REV__nc|ENSG00000070601|Q5SYB0-2|FRMPD1	REV__nc|ENSG00000070601|Q5SYB0-2|FRMPD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7261657714844	2	498.278398	994.542243	-0.72804	-0.00036277	1.9784	0.00098578	1.2503	0.00062301	498.2793303130221	35.026	0.61695	35.101	34.788	35.405	0.075306					31	21	2	0	0	0	0.34337	1	7038	7038		5.2307	1.2863	1	236050	+		19478	13728	10997	10998	24627	24627					0.04475329504589354
KPVGVAASL	9	Unmodified	_KPVGVAASL_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;ENST00000562659.1_1_16:85698640-85699994:+|nuORF	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.238525390625	2	421.260728	840.506903	-0.10723	-4.5172E-05	0.46601	0.00019631	0.35878	0.00015114	421.26076017781133	33.535	0.27432	33.601	33.549	33.824	0.066704					13	9	2	0	0	0	0.24289	1	6517	6517		18.146	3.3081	1	56469			19479	3547	10998	10999	24628	24628					0.08026990248424681
KPVIPAAVL	9	Unmodified	_KPVIPAAVL_					0	0	0		ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2900085449219	2	454.302396	906.590239	0.201	9.1316E-05	-0.030329	-1.3779E-05	0.17067	7.7537E-05	454.3024122132634	51.772	0.54486	51.819	51.595	52.14	0.046574					32	19	2	0	0	0	0.14099	1	12088	12088		34.102	0	1	446620			19480	5315	10999	11000	24629	24629					0.1332072669625859
KPVISASPTI	10	Unmodified	_KPVISASPTI_					0	0	0		nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8056945800781	2	506.8055	1011.59645	-0.057989	-2.9389E-05	0.81751	0.00041432	0.75952	0.00038493	506.8060875645036	28.154	0.46951	28.154	27.84	28.31	0					34	15	3	0	0	0	0.11081	1	4863	4863		45.7	0	1	131420			19481	4757	11000	11001	24630	24630					0.0911120013714708
KPVISASPTI	10	Unmodified	_KPVISASPTI_					0	0	0		nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.8053894042969	2	506.8055	1011.59645	-0.00028682	-1.4536E-07	0.67955	0.0003444	0.67926	0.00034425	506.80584138237555	28.17	0.54056	28.165	27.793	28.333	-0.0042572					38	18	3	0	0	0	0.093201	1	4867	4867		49.554	0	1	164710			19482	4757	11000	11001	24631	24631					0.0911120013714708
KPVISASPTI	10	Unmodified	_KPVISASPTI_					0	0	0		nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.8061218261719	2	506.8055	1011.59645	-0.084862	-4.3009E-05	0.87407	0.00044298	0.78921	0.00039997	506.805977079316	28.161	0.50045	28.161	27.793	28.294	0.0004673					31	17	2	0	0	0	0.24105	1	4884	4884		27.629	0	1	165850			19483	4757	11000	11001	24632	24632					0.0911120013714708
KPVKFQVDI	9	Unmodified	_KPVKFQVDI_					0	0	0		nc|ENSG00000174672|Q8IWQ3-6|BRSK2;nc|ENSG00000174672|Q8IWQ3-3|BRSK2;nc|ENSG00000174672|Q8IWQ3-2|BRSK2;nc|ENSG00000174672|Q8IWQ3-4|BRSK2;ENSG00000174672|ENST00000528841|BRSK2;nc|ENSG00000174672|Q8IWQ3-5|BRSK2;ENST00000526768.5_1_11:1475616-1478267:+|nuORF;ENST00000531932.1_1_11:1475661-1480576:+|nuORF	nc|ENSG00000174672|Q8IWQ3-6|BRSK2	nc|ENSG00000174672|Q8IWQ3-6|BRSK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.8194580078125	2	537.321317	1072.62808	-0.22441	-0.00012058	-0.32113	-0.00017255	-0.54554	-0.00029313	537.3210358724597	34.276	1.4328	34.342	33.904	35.337	0.06636					129	49	5	0	0	0	0.26612	1	6684	6684		13.906	0.86358	1	2818800			19484	6810	11001	11002	24633	24633					0.09467192891088416
KPVKPHSSF	9	Unmodified	_KPVKPHSSF_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.P1391Qfs*3|1|0.19|ENSG00000117523|chr1:171541644-171541648|CAAGA/-|frameshift_variant;PRRC2C|p.I2096Ffs*11|1|0.06|ENSG00000117523|chr1:171566405-171566406|-/ATTCT|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7901000976562	2	513.790184	1025.56581	0.0049051	2.5202E-06	-0.069223	-3.5566E-05	-0.064318	-3.3046E-05	513.7901417950922	14.112	0.63088	14.112	13.847	14.478	0					44	21	3	0	0	0	0.026579	3	629	609;629;680		61.602	38.866	1	299630			19485	12673	11002	11003	24634;24635;24636	24635					0.05405466542742943
KPVKPHSSF	9	Unmodified	_KPVKPHSSF_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.P1391Qfs*3|1|0.19|ENSG00000117523|chr1:171541644-171541648|CAAGA/-|frameshift_variant;PRRC2C|p.I2096Ffs*11|1|0.06|ENSG00000117523|chr1:171566405-171566406|-/ATTCT|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7901000976562	2	513.790184	1025.56581	-0.084653	-4.3494E-05	0.33823	0.00017378	0.25358	0.00013029	513.7902737460075	14.203	0.54945	14.098	13.873	14.422	-0.10466					41	18	3	0	0	0	0.29638	1	698	698		9.3831	4.6271	1	303090			19486	12673	11002	11003	24637	24637					0.05405466542742943
KPVKPHSSF	9	Unmodified	_KPVKPHSSF_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.P1391Qfs*3|1|0.19|ENSG00000117523|chr1:171541644-171541648|CAAGA/-|frameshift_variant;PRRC2C|p.I2096Ffs*11|1|0.06|ENSG00000117523|chr1:171566405-171566406|-/ATTCT|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7901000976562	2	513.790184	1025.56581	-0.13356	-6.862E-05	0.038309	1.9683E-05	-0.095247	-4.8937E-05	513.7901839003345	14.165	0.65235	14.099	13.831	14.483	-0.066067					48	22	3	0	0	0	0.28225	1	690	690		11.495	8.4995	1	248280			19487	12673	11002	11003	24638	24638					0.05405466542742943
KPVLFPSKRF	10	Unmodified	_KPVLFPSKRF_					0	0	0			REV__ENSG00000187097|ENST00000334696|ENTPD5	REV__ENSG00000187097|ENST00000334696|ENTPD5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9183654785156	3	406.916764	1217.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.86	1	103.86	103.36	104.36	-0.0011139								0	0	0	0.38166	1	27610	27610		0.62683	0.17231	1		+		19488	18488	11003	11004	24639	24639					0.12830849944725742
KPVLKQIIM	9	Unmodified	_KPVLKQIIM_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.3450317382812	2	535.343738	1068.67292	0.75862	0.00040612	-0.84262	-0.00045109	-0.084	-4.4969E-05	535.3444048941616	36.169	0.915	36.256	35.818	36.733	0.08625					80	32	5	0	0	0	0.33018	1	7330	7330		4.3292	0	1	775970			19489	8721	11004	11005	24640	24640					0.14133300432763463
KPVNRISL	8	Unmodified	_KPVNRISL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.7926940917969	2	463.792727	925.5709	-0.17383	-8.0623E-05	0.15577	7.2243E-05	-0.018068	-8.3796E-06	463.7927249994858	25.776	1.0506	25.776	25.359	26.41	0					103	36	4	0	0	0	0.088223	2	4147	4147;4196		62.573	14.227	1	1355500			19490	1775	11005	11006	24641;24642	24641					0.1051377040537318
KPVNRISL	8	Unmodified	_KPVNRISL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.79254150390625	2	463.792727	925.5709	-0.21848	-0.00010133	0.088676	4.1127E-05	-0.12981	-6.0204E-05	463.79272489868555	25.844	1.1363	25.805	25.383	26.519	-0.038671					98	39	4	0	0	0	0.029711	3	4157	4157;4202;4246		88.954	20.873	1	1230800			19491	1775	11005	11006	24643;24644;24645	24643					0.1051377040537318
KPVNRISL	8	Unmodified	_KPVNRISL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.792724609375	2	463.792727	925.5709	0.041535	1.9264E-05	-0.10224	-4.7418E-05	-0.060704	-2.8154E-05	463.7926337653179	25.89	1.0864	25.868	25.47	26.556	-0.022238					103	38	4	0	0	0	0.12475	3	4202	4156;4202;4246		56.177	3.9087	1	1323900			19492	1775	11005	11006	24646;24647;24648	24647					0.1051377040537318
KPVSERQA	8	Unmodified	_KPVSERQA_					0	0	0		ENSG00000112983|ENST00000254900|BRD8	ENSG00000112983|ENST00000254900|BRD8	ENSG00000112983|ENST00000254900|BRD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7686462402344	2	457.756341	913.498129	-0.22128	-0.00010129	-0.081714	-3.7405E-05	-0.30299	-0.0001387	457.75618522436855	14.185	0.50624	14.185	14.055	14.561	0					27	17	3	0	0	0	0.34313	1	667	667		6.7232	0	1	72298			19493	2468	11006	11007	24649	24649					0.03792016611953386
KPVSIKESKS	10	Unmodified	_KPVSIKESKS_					0	0	0			REV__ENSG00000135315|ENST00000403245|CEP162	REV__ENSG00000135315|ENST00000403245|CEP162	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8056030273438	2	551.826963	1101.63937	0.089082	4.9158E-05	-0.49747	-0.00027452	-0.40839	-0.00022536	551.8265767611724	12.912	0.22435	12.813	12.729	12.953	-0.099291					16	7	3	0	0	0	0.31745	1	276	276		8.7454	2.0222	1	48434	+		19494	15731	11007	11008	24650	24650					0.09261970194552305
KPVSSNNSL	9	Unmodified	_KPVSSNNSL_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.2535400390625	2	473.253631	944.49271	0.029928	1.4163E-05	-0.0078531	-3.7165E-06	0.022075	1.0447E-05	473.2535830868386	16.687	0.86399	16.687	16.322	17.186	0					58	29	3	0	0	0	0.07944	1	1401	1401		41.956	16.556	1	225870			19495	5456	11008	11009	24651	24651					0.018242930294718462
KPVSSNNSL	9	Unmodified	_KPVSSNNSL_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.2534484863281	2	473.253631	944.49271	0.009411	4.4538E-06	-0.17395	-8.2324E-05	-0.16454	-7.787E-05	473.25348402094403	16.771	0.77851	16.656	16.362	17.14	-0.11434					59	27	3	0	0	0	0.058995	1	1440	1440		49.554	13.427	1	239360			19496	5456	11008	11009	24652	24652					0.018242930294718462
KPVSSNNSL	9	Unmodified	_KPVSSNNSL_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.2536315917969	2	473.253631	944.49271	0.244	0.00011547	-0.35174	-0.00016646	-0.10774	-5.0991E-05	473.2533624972039	16.761	0.72594	16.699	16.351	17.077	-0.062532					54	25	3	0	0	0	0.038291	1	1425	1425		57.249	17.299	1	235090			19497	5456	11008	11009	24653	24653					0.018242930294718462
KPVSSQLR	8	Unmodified	_KPVSSQLR_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7642822265625	2	457.774534	913.534515	-0.24608	-0.00011265	0.36101	0.00016526	0.11493	5.2613E-05	457.7751285085778	13.646	0.60282	13.547	13.306	13.908	-0.09929					53	21	4	0	0	0	0.44569	1	543	543		7.2892	1.0834	1	108950			19498	276	11009	11010	24654	24654					0.07428893508665624
KPVSSQLR	8	Unmodified	_KPVSSQLR_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7642517089844	2	457.774534	913.534515	-0.21154	-9.6836E-05	0.20309	9.2971E-05	-0.0084429	-3.865E-06	457.7750555559323	13.667	0.52818	13.601	13.388	13.916	-0.066804					48	18	4	0	0	0	0.44569	1	540	540		7.2892	1.0834	1	107870			19499	276	11009	11010	24655	24655					0.07428893508665624
KPVSVAISL	9	Unmodified	_KPVSVAISL_					0	0	0		nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;ENSG00000126391|ENST00000317568|FRMD8	nc|ENSG00000126391|Q9BZ67-2|FRMD8	nc|ENSG00000126391|Q9BZ67-2|FRMD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2893371582031	2	457.289485	912.564418	0.23745	0.00010859	-0.027183	-1.2431E-05	0.21027	9.6154E-05	457.289338197698	49.425	0.75899	49.425	49.135	49.894	0					54	27	3	0	0	0	0.0091837	1	11399	11399		80.676	23.205	1	525840			19500	3270	11010	11011	24656	24656					0.10463832454001931
KPVSVAISL	9	Unmodified	_KPVSVAISL_					0	0	0		nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;ENSG00000126391|ENST00000317568|FRMD8	nc|ENSG00000126391|Q9BZ67-2|FRMD8	nc|ENSG00000126391|Q9BZ67-2|FRMD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.28955078125	2	457.289485	912.564418	0.049724	2.2738E-05	0.14724	6.7332E-05	0.19696	9.007E-05	457.2894791218375	49.407	0.66415	49.439	49.149	49.813	0.032043					49	23	3	0	0	0	0.053988	1	11390	11390		51.415	3.0694	1	451420			19501	3270	11010	11011	24657	24657					0.10463832454001931
KPVSVAISL	9	Unmodified	_KPVSVAISL_					0	0	0		nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;ENSG00000126391|ENST00000317568|FRMD8	nc|ENSG00000126391|Q9BZ67-2|FRMD8	nc|ENSG00000126391|Q9BZ67-2|FRMD8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	457.289485	912.564418	0.10543	4.8211E-05	0.14319	6.5479E-05	0.24862	0.00011369	457.28941961756806	49.485	0.6107	49.53	49.266	49.877	0.044891	0.065328	3.4073E-05	NaN	80.676	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	559200			19502	3270	11010	11011							0.10463832454001931
KPVTIAIQAP	10	Unmodified	_KPVTIAIQAP_					0	0	0			REV__nc|ENSG00000075151|O43432|EIF4G3	REV__nc|ENSG00000075151|O43432|EIF4G3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7510986328125	2	519.321317	1036.62808	0.23363	0.00012133	-0.43961	-0.0002283	-0.20598	-0.00010697	519.3211177693246	19.332	0.4828	19.216	19.031	19.514	-0.11592					40	16	3	0	0	0	0.31515	1	2207	2207		12.241	2.8575	1	123760	+		19503	13801	11011	11012	24658	24658					0.11123192891091094
KPVTIAIQAP	10	Unmodified	_KPVTIAIQAP_					0	0	0			REV__nc|ENSG00000075151|O43432|EIF4G3	REV__nc|ENSG00000075151|O43432|EIF4G3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7510986328125	2	519.321317	1036.62808	0.22992	0.0001194	-0.54775	-0.00028446	-0.31782	-0.00016505	519.3211914190118	19.304	0.57848	19.248	19.017	19.595	-0.055693					51	19	4	0	0	0	0.31515	1	2209	2209		8.1555	0	1	176790	+		19504	13801	11011	11012	24659	24659					0.11123192891091094
KPVYPGQTL	9	Unmodified	_KPVYPGQTL_					0	0	0		HSD17B4|p.A662Lfs*7|1|0.22|ENSG00000133835|chr5:119531392-119531392|G/-|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000507353.1_1_5:118861592-118865690:+|nuORF;ENST00000442060.7_1_5:118860916-118866997:+|nuORF;ENST00000515235.6_1_5:118829562-118961685:+|nuORF	HSD17B4|p.A662Lfs*7|1|0.22|ENSG00000133835|chr5:119531392-119531392|G/-|frameshift_variant	HSD17B4|p.A662Lfs*7|1|0.22|ENSG00000133835|chr5:119531392-119531392|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.78466796875	2	501.784567	1001.55458	0.34707	0.00017415	0.083283	4.179E-05	0.43035	0.00021594	501.7844783475558	35.559	1.1317	35.559	35.2	36.332	0					99	41	4	0	0	0	0.00078391	3	7153	7107;7153;7199		125.53	43.612	1	3321700			19505	3733	11012	11013	24660;24661;24662	24661					0.053866444486288856
KPVYPGQTL	9	Unmodified	_KPVYPGQTL_					0	0	0		HSD17B4|p.A662Lfs*7|1|0.22|ENSG00000133835|chr5:119531392-119531392|G/-|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000507353.1_1_5:118861592-118865690:+|nuORF;ENST00000442060.7_1_5:118860916-118866997:+|nuORF;ENST00000515235.6_1_5:118829562-118961685:+|nuORF	HSD17B4|p.A662Lfs*7|1|0.22|ENSG00000133835|chr5:119531392-119531392|G/-|frameshift_variant	HSD17B4|p.A662Lfs*7|1|0.22|ENSG00000133835|chr5:119531392-119531392|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7847900390625	2	501.784567	1001.55458	0.30873	0.00015492	0.20029	0.0001005	0.50902	0.00025542	501.7845643651082	35.484	1.0702	35.562	35.185	36.255	0.078014					88	38	3	0	0	0	0.0013924	2	7119	7119;7171		117.76	49.393	1	3486900			19506	3733	11012	11013	24663;24664	24663					0.053866444486288856
KPVYPGQTL	9	Unmodified	_KPVYPGQTL_					0	0	0		HSD17B4|p.A662Lfs*7|1|0.22|ENSG00000133835|chr5:119531392-119531392|G/-|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000507353.1_1_5:118861592-118865690:+|nuORF;ENST00000442060.7_1_5:118860916-118866997:+|nuORF;ENST00000515235.6_1_5:118829562-118961685:+|nuORF	HSD17B4|p.A662Lfs*7|1|0.22|ENSG00000133835|chr5:119531392-119531392|G/-|frameshift_variant	HSD17B4|p.A662Lfs*7|1|0.22|ENSG00000133835|chr5:119531392-119531392|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.78485107421875	2	501.784567	1001.55458	-0.0099377	-4.9866E-06	0.50372	0.00025276	0.49378	0.00024777	501.7847188913645	35.475	1.1292	35.561	35.204	36.333	0.08625					94	40	4	0	0	0	0.0019475	1	7098	7098		110.67	21.274	1	3539200			19507	3733	11012	11013	24665	24665					0.053866444486288856
KPYAHILSV	9	Unmodified	_KPYAHILSV_					0	0	0		nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3;ENST00000471498.5_1_1:28324859-28384546:-|nuORF	nc|ENSG00000158161|Q99504-4|EYA3	nc|ENSG00000158161|Q99504-4|EYA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.260498046875	2	514.300384	1026.58622	0.3063	0.00015753	0.24337	0.00012517	0.54967	0.0002827	514.3006297681359	37.353	0.38688	37.44	37.247	37.634	0.08741					19	13	2	0	0	0	0.17242	1	7696	7696		36.127	1.7253	1	175390			19508	5344	11013	11014	24666	24666					0.07398637202550162
KPYAHILSV	9	Unmodified	_KPYAHILSV_					0	0	0		nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3;ENST00000471498.5_1_1:28324859-28384546:-|nuORF	nc|ENSG00000158161|Q99504-4|EYA3	nc|ENSG00000158161|Q99504-4|EYA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.260009765625	2	514.300384	1026.58622	0.29953	0.00015405	0.17739	9.1232E-05	0.47692	0.00024528	514.3007139334275	37.287	0.48166	37.38	37.142	37.624	0.093018					21	17	2	0	0	0	0.17242	1	7681	7681		29.082	2.8134	1	156650			19509	5344	11013	11014	24667	24667					0.07398637202550162
KPYDGITTI	9	Unmodified	_KPYDGITTI_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2740173339844	2	504.274032	1006.53351	0.30164	0.00015211	-0.32644	-0.00016461	-0.024795	-1.2503E-05	504.2736793911657	43.459	0.77881	43.459	43.18	43.959	0					82	28	4	0	0	0	0.09064	1	9584	9584		47.749	17.112	1	2334200			19510	4353	11014	11015	24668	24668					0.030506343490856125
KPYDGITTI	9	Unmodified	_KPYDGITTI_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2738037109375	2	504.274032	1006.53351	0.4779	0.00024099	-0.48219	-0.00024316	-0.0042912	-2.1639E-06	504.2736407791425	43.192	0.86728	43.27	43.023	43.89	0.077518					85	31	4	0	0	0	0.051692	1	9453	9453		72.968	23.035	1	2498900			19511	4353	11014	11015	24669	24669					0.030506343490856125
KPYDGITTI	9	Unmodified	_KPYDGITTI_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.27362060546875	2	504.274032	1006.53351	0.2774	0.00013989	-0.30628	-0.00015445	-0.02888	-1.4563E-05	504.273789116048	43.176	0.78729	43.26	42.948	43.736	0.083992					72	28	3	0	0	0	0.10058	1	9435	9435		53.833	19.431	1	2433300			19512	4353	11014	11015	24670	24670					0.030506343490856125
KPYDLRRRL	9	Unmodified	_KPYDLRRRL_					0	0	0		ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-6|WWP1;nc|ENSG00000123124|Q9H0M0-3|WWP1;ENSG00000123124|ENST00000517970|WWP1;nc|ENSG00000198373|O00308-3|WWP2;nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2	ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000198373|O00308-3|WWP2	ENST00000518683.5_1_8:87410815-87460532:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.7852783203125	3	406.247285	1215.72002	-0.21348	-8.6725E-05	0.70198	0.00028518	0.4885	0.00019845	406.2475990236327	23.846	0.71895	23.846	23.593	24.312	0					70	24	4	0	0	0	0.25817	1	3596	3596		3.8763	1.9488	1	406150			19513	3088;8065	11015	11016	24671	24671					0.12079296028105091
KPYDLRRRL	9	Unmodified	_KPYDLRRRL_					0	0	0		ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-6|WWP1;nc|ENSG00000123124|Q9H0M0-3|WWP1;ENSG00000123124|ENST00000517970|WWP1;nc|ENSG00000198373|O00308-3|WWP2;nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2	ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000198373|O00308-3|WWP2	ENST00000518683.5_1_8:87410815-87460532:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	406.247285	1215.72002	-0.030576	-1.2421E-05	0.49089	0.00019942	0.46032	0.000187	406.24750892738456	24.101	0.71088	24.062	23.737	24.448	-0.038927	0.089761	-0.00015013	NaN	3.8763	69	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	401560			19514	3088;8065	11015	11016							0.12079296028105091
KPYHGGGAPL	10	Unmodified	_KPYHGGGAPL_					0	0	0		nc|ENSG00000106305|Q13155-2|AIMP2;ENSG00000106305|ENST00000223029|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.3059387207031	2	498.766709	995.518865	0.27138	0.00013535	-0.19919	-9.935E-05	0.072185	3.6003E-05	498.766453056409	19.315	0.45617	19.259	19.114	19.571	-0.055691					21	15	2	0	0	0	0.31847	1	2203	2203		6.7232	0.51738	1	26223			19515	2070	11016	11017	24672	24672					0.020926069916072265
KPYHGRGAPL	10	Unmodified	_KPYHGRGAPL_					0	0	0		ENST00000416602.6_1_7:66767701-66771051:+|nuORF	ENST00000416602.6_1_7:66767701-66771051:+|nuORF	ENST00000416602.6_1_7:66767701-66771051:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.306396484375	2	548.306532	1094.59851	0.3423	0.00018769	-0.10306	-5.6506E-05	0.23925	0.00013118	548.3061446487039	16.03	0.50382	15.968	15.701	16.205	-0.062534					30	17	3	0	0	0	0.31691	1	1216	1216		9.3831	5.0539	1	49139			19516	10321	11017	11018	24673	24673					0.05499673665599403
KPYIRTSL	8	Unmodified	_KPYIRTSL_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;ENST00000559676.1_1_15:78777183-78780743:+|nuORF	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.29241943359375	2	489.292559	976.570566	0.37627	0.0001841	-0.36253	-0.00017738	0.013739	6.7223E-06	489.2922745798343	30.306	1.0211	30.333	29.933	30.954	0.027948					87	35	3	0	0	0	0.39102	1	5452	5452		20.415	3.3016	1	1005400			19517	3973	11018	11019	24674	24674					0.0813435068552053
KPYKFRVW	8	Unmodified	_KPYKFRVW_					0	0	0			REV__ENSG00000143819|ENST00000272167|EPHX1	REV__ENSG00000143819|ENST00000272167|EPHX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.325439453125	2	562.324194	1122.63383	0.061128	3.4374E-05	3.0358	0.0017071	3.097	0.0017415	562.3253885840991	12.685	0.40403	12.586	12.381	12.785	-0.099291					26	13	3	0	0	0	0.46022	1	176	176		2.3027	0.21673	1	51330	+		19518	16203	11019	11020	24675	24675					0.07742336193405208
KPYKFRVW	8	Unmodified	_KPYKFRVW_					0	0	0			REV__ENSG00000143819|ENST00000272167|EPHX1	REV__ENSG00000143819|ENST00000272167|EPHX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.326416015625	2	562.324194	1122.63383	-0.17413	-9.7915E-05	3.5026	0.0019696	3.3285	0.0018717	562.3255768090484	12.72	0.35658	12.653	12.463	12.819	-0.067495					25	11	3	0	0	0	0.46022	1	191	191		2.3027	0.21673	1	55208	+		19519	16203	11019	11020	24676	24676					0.07742336193405208
KPYKFRVW	8	Unmodified	_KPYKFRVW_					0	0	0			REV__ENSG00000143819|ENST00000272167|EPHX1	REV__ENSG00000143819|ENST00000272167|EPHX1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	562.324194	1122.63383	-0.070825	-3.9827E-05	3.4121	0.0019187	3.3413	0.0018789	562.3260795687381	12.592	0.28364	12.592	12.468	12.751	0	-0.01806	0.00010663	NaN	2.3027	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65147	+		19520	16203	11019	11020							0.07742336193405208
KPYKFRVW	8	Unmodified	_KPYKFRVW_					0	0	0			REV__ENSG00000143819|ENST00000272167|EPHX1	REV__ENSG00000143819|ENST00000272167|EPHX1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	562.324194	1122.63383	0.061128	3.4374E-05	3.0358	0.0017071	3.097	0.0017415	562.3253885840991	12.685	0.40403	12.586	12.381	12.785	-0.099291	-0.024532	-0.00031652	NaN	2.3027	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51330	+		19521	16203	11019	11020							0.07742336193405208
KPYNVYITV	9	Unmodified	_KPYNVYITV_					0	0	0		ENST00000585750.1_1_18:61011618-61022465:-|nuORF;ENST00000586791.5_1_18:60999017-61011732:-|nuORF;nc|ENSG00000119537|Q06136-2|KDSR;ENSG00000119537|ENST00000645214|KDSR	ENST00000585750.1_1_18:61011618-61022465:-|nuORF	ENST00000585750.1_1_18:61011618-61022465:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.8059692382812	2	548.8055	1095.59645	0.60045	0.00032953	-0.011008	-6.041E-06	0.58944	0.00032349	548.8053952321804	51.22	0.50296	51.22	50.978	51.481	0					44	18	3	0	0	0	0.079752	1	11952	11952		41.84	9.0539	1	770440			19522	2885	11020	11021	24677	24677					0.05247200137114305
KPYNVYITV	9	Unmodified	_KPYNVYITV_					0	0	0		ENST00000585750.1_1_18:61011618-61022465:-|nuORF;ENST00000586791.5_1_18:60999017-61011732:-|nuORF;nc|ENSG00000119537|Q06136-2|KDSR;ENSG00000119537|ENST00000645214|KDSR	ENST00000585750.1_1_18:61011618-61022465:-|nuORF	ENST00000585750.1_1_18:61011618-61022465:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.8059692382812	2	548.8055	1095.59645	0.56083	0.00030778	0.017273	9.4794E-06	0.5781	0.00031726	548.8053165858097	51.206	0.51732	51.252	51.011	51.528	0.046577					43	19	3	0	0	0	0.14961	1	11939	11939		41.84	11.999	1	771090			19523	2885	11020	11021	24678	24678					0.05247200137114305
KPYNVYITV	9	Unmodified	_KPYNVYITV_					0	0	0		ENST00000585750.1_1_18:61011618-61022465:-|nuORF;ENST00000586791.5_1_18:60999017-61011732:-|nuORF;nc|ENSG00000119537|Q06136-2|KDSR;ENSG00000119537|ENST00000645214|KDSR	ENST00000585750.1_1_18:61011618-61022465:-|nuORF	ENST00000585750.1_1_18:61011618-61022465:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8057250976562	2	548.8055	1095.59645	0.59207	0.00032493	0.057358	3.1478E-05	0.64943	0.00035641	548.8054141337853	51.283	0.51858	51.293	51.042	51.561	0.0095634					45	19	3	0	0	0	0.12563	1	11950	11950		47.749	20.12	1	795350			19524	2885	11020	11021	24679	24679					0.05247200137114305
KPYPLHRIKL	10	Unmodified	_KPYPLHRIKL_					0	0	0		nc|ENSG00000100600|Q99538-2|LGMN;ENSG00000100600|ENST00000334869|LGMN	nc|ENSG00000100600|Q99538-2|LGMN	nc|ENSG00000100600|Q99538-2|LGMN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2677001953125	3	422.267797	1263.78156	0.15219	6.4265E-05	-0.14991	-6.3301E-05	0.0022848	9.6478E-07	422.2676509577494	29.35	0.99372	29.35	29.006	29.999	0					99	35	4	0	0	0	0.2361	1	5267	5267		28.234	19.789	1	439600			19525	1612	11021	11022	24680	24680					0.16022227727376048
KPYPLHRIKL	10	Unmodified	_KPYPLHRIKL_					0	0	0		nc|ENSG00000100600|Q99538-2|LGMN;ENSG00000100600|ENST00000334869|LGMN	nc|ENSG00000100600|Q99538-2|LGMN	nc|ENSG00000100600|Q99538-2|LGMN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	422.267797	1263.78156	0.0094114	3.9741E-06	-0.024341	-1.0278E-05	-0.01493	-6.3043E-06	422.26769916637113	29.359	0.82953	29.371	29	29.83	0.012264	-0.014728	3.4811E-05	NaN	28.234	70	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	458050			19526	1612	11021	11022							0.16022227727376048
KPYPLHRIKL	10	Unmodified	_KPYPLHRIKL_					0	0	0		nc|ENSG00000100600|Q99538-2|LGMN;ENSG00000100600|ENST00000334869|LGMN	nc|ENSG00000100600|Q99538-2|LGMN	nc|ENSG00000100600|Q99538-2|LGMN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	422.267797	1263.78156	-0.15924	-6.7241E-05	0.0099474	4.2005E-06	-0.14929	-6.3041E-05	422.26771257465555	29.424	0.8469	29.437	29.033	29.88	0.013474	0.051065	7.8247E-05	NaN	28.234	83	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467920			19527	1612	11021	11022							0.16022227727376048
KPYVLMFAFL	10	Unmodified	_KPYVLMFAFL_					0	0	0			REV__PPEF2|p.I533Tfs*3|1|0.04|ENSG00000156194|chr4:75872058-75872076|TTAGCTTGATACTGCACAA/-|frameshift_variant	REV__PPEF2|p.I533Tfs*3|1|0.04|ENSG00000156194|chr4:75872058-75872076|TTAGCTTGATACTGCACAA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.23114013671875	3	410.231473	1227.67259	-0.45807	-0.00018792	1.0226	0.00041952	0.56457	0.00023161	410.2318677865062	103.63	0.39386	103.63	103.56	103.95	0					78	55	2	0	0	0	0.39782	1	27533	27533		3.8763	0.55669	1	5401600	+		19528	16735	11022	11023	24681	24681					0.0678588071291415
KQAIEEQLQL	10	Unmodified	_KQAIEEQLQL_					0	0	0		ENSG00000139437|ENST00000405876|TCHP	ENSG00000139437|ENST00000405876|TCHP	ENSG00000139437|ENST00000405876|TCHP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.334228515625	2	600.335153	1198.65575	0.46962	0.00028193	-1.0568	-0.00063442	-0.58716	-0.00035249	600.3346338446844	82.233	2.1935	82.209	81.045	83.239	-0.02404					129	90	2	0	0	0	0.39009	2	21404	21404;21456		5.2969	0.39987	1	430490			19529	4237	11023	11024	24682;24683	24682					0.0643705136067183
KQAKLRCALC	10	Unmodified	_KQAKLRCALC_					0	0	0			REV__ENSG00000134594|ENST00000257017|RAB33A	REV__ENSG00000134594|ENST00000257017|RAB33A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.7927856445312	2	567.317728	1132.6209	0.12022	6.8205E-05	2.4864	0.0014106	2.6066	0.0014788	567.3193770043549	31.119	0.19009	31.147	31.063	31.253	0.027946					10	6	2	0	0	0	0.31847	1	5795	5795		6.7232	0	1	57099	+		19530	15687	11024	11025	24684	24684					0.059898137473737734
KQCFLQCSY	9	Unmodified	_KQCFLQCSY_					0	0	0			REV__ENSG00000197056|ENST00000359858|ZMYM1	REV__ENSG00000197056|ENST00000359858|ZMYM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3243408203125	2	560.25172	1118.48889	0.68216	0.00038218	-0.18889	-0.00010583	0.49327	0.00027635	560.2515144337465	50.005	0.69901	50.05	49.877	50.576	0.044891					39	25	2	0	0	0	0.25526	1	11706	11706		4.3292	0	1	381640	+		19531	18705	11025	11026	24685	24685					-0.06561836060245696
KQCGKVFIS	9	Unmodified	_KQCGKVFIS_					0	0	0		ENSG00000132010|ENST00000334213|ZNF20	ENSG00000132010|ENST00000334213|ZNF20	ENSG00000132010|ENST00000334213|ZNF20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2790222167969	2	505.278595	1008.54264	0.25668	0.00012969	0.96245	0.0004863	1.2191	0.000616	505.2785732140604	19.552	0.75496	19.436	19.145	19.9	-0.11592					40	25	2	0	0	0	0.33508	1	2290	2290		3.5965	0.70727	1	62286			19532	3607	11026	11027	24686	24686					0.038707044337797925
KQCGKVFIS	9	Unmodified	_KQCGKVFIS_					0	0	0		ENSG00000132010|ENST00000334213|ZNF20	ENSG00000132010|ENST00000334213|ZNF20	ENSG00000132010|ENST00000334213|ZNF20	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	505.278595	1008.54264	0.13335	6.7377E-05	1.8823	0.00095109	2.0156	0.0010185	505.2789047194592	19.335	0.70038	19.335	19.095	19.796	0	-0.094976	0.00040695	NaN	3.5965	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68106			19533	3607	11026	11027							0.038707044337797925
KQCGKVFIS	9	Unmodified	_KQCGKVFIS_					0	0	0		ENSG00000132010|ENST00000334213|ZNF20	ENSG00000132010|ENST00000334213|ZNF20	ENSG00000132010|ENST00000334213|ZNF20	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	505.278595	1008.54264	0.29878	0.00015097	1.4942	0.00075498	1.793	0.00090595	505.2787452514958	19.574	0.67353	19.518	19.172	19.846	-0.055691	0.08876	1.4739E-05	NaN	3.5965	42	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51838			19534	3607	11026	11027							0.038707044337797925
KQDLSHMLPVR	11	Unmodified	_KQDLSHMLPVR_					0	0	0		ENST00000515837.6_1_11:61166042-61166276:+|nuORF	ENST00000515837.6_1_11:61166042-61166276:+|nuORF	ENST00000515837.6_1_11:61166042-61166276:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.25286865234375	3	441.911573	1322.71289	-0.012662	-5.5957E-06	3.0705	0.0013569	3.0578	0.0013513	441.9130481944054	25.818	0.47483	25.796	25.47	25.945	-0.022238					30	16	3	0	0	0	0.33303	1	4113	4113		2.4348	0.69251	1	115400			19535	11432	11027	11028	24687	24687					0.06444195365361338
KQDLSHMLPVR	11	Unmodified	_KQDLSHMLPVR_					0	0	0		ENST00000515837.6_1_11:61166042-61166276:+|nuORF	ENST00000515837.6_1_11:61166042-61166276:+|nuORF	ENST00000515837.6_1_11:61166042-61166276:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	441.911573	1322.71289	-0.15991	-7.0668E-05	3.8311	0.001693	3.6711	0.0016223	442.24827534583363	25.741	0.46051	25.702	25.442	25.902	-0.038671	-0.047126	0.00057707	NaN	2.4348	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103820			19536	11432	11027	11028							0.06444195365361338
KQEEQRQHL	9	Unmodified	_KQEEQRQHL_					0	0	0		nc|ENSG00000172830|Q8TE77-4|SSH3;nc|ENSG00000172830|Q8TE77-2|SSH3;ENSG00000172830|ENST00000308127|SSH3	nc|ENSG00000172830|Q8TE77-4|SSH3	nc|ENSG00000172830|Q8TE77-4|SSH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.7788696289062	2	598.312543	1194.61053	0.60502	0.00036199	1.4806	0.00088587	2.0856	0.0012479	598.3127234750145	49.186	0.13245	49.186	49.135	49.267	0					5	4	2	0	0	0	0.24688	1	11304	11304		14.838	0	1	57301			19537	6666	11028	11029	24688	24688					0.021012456181551897
KQEETEGFVS	10	Unmodified	_KQEETEGFVS_					0	0	0			REV__ENSG00000108511|ENST00000225648|HOXB6	REV__ENSG00000108511|ENST00000225648|HOXB6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.2869873046875	2	577.272218	1152.52988	0.16411	9.4734E-05	0.7187	0.00041489	0.88281	0.00050962	577.2725495304446	27.174	0.62642	27.163	26.928	27.555	-0.01156					40	21	2	0	0	0	0.32033	1	4682	4682		3.5965	3.5965	1	434250	+		19538	14601	11029	11030	24689	24689					-0.04028080215425689
KQEEVKAK	8	Unmodified	_KQEEVKAK_					0	0	0			REV__ENSG00000122786|ENST00000361675|CALD1	REV__ENSG00000122786|ENST00000361675|CALD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7685852050781	2	480.279649	958.544745	-0.12112	-5.8173E-05	0.054193	2.6028E-05	-0.066931	-3.2146E-05	480.2797934192523	14.525	0.45335	14.525	14.335	14.789	0					24	15	2	0	0	0	0.29394	1	740	740		36.127	9.2434	1	182730	+		19539	15173	11030	11031	24690	24690					0.06381456443239131
KQEEVKAK	8	Unmodified	_KQEEVKAK_					0	0	0			REV__ENSG00000122786|ENST00000361675|CALD1	REV__ENSG00000122786|ENST00000361675|CALD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7684326171875	2	480.279649	958.544745	-0.056735	-2.7249E-05	-0.097611	-4.688E-05	-0.15435	-7.4129E-05	480.2796882120355	14.641	0.40972	14.575	14.349	14.758	-0.066068					25	14	2	0	0	0	0.26862	1	772	772		34.402	7.5181	1	173060	+		19540	15173	11030	11031	24691	24691					0.06381456443239131
KQEHDIIKQ	9	Unmodified	_KQEHDIIKQ_					0	0	0		ENSG00000110330|ENST00000227758|BIRC2;nc|ENSG00000110330|Q13490-2|BIRC2	ENSG00000110330|ENST00000227758|BIRC2	ENSG00000110330|ENST00000227758|BIRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.796630859375	2	569.814387	1137.61422	-0.015537	-8.8532E-06	0.11679	6.6548E-05	0.10125	5.7695E-05	569.8143812544622	13.877	0.24004	13.772	13.633	13.873	-0.10466					17	8	3	0	0	0	0.31417	1	544	544		6.7232	0.51738	1	38091			19541	2306	11031	11032	24692	24692					0.050919153919721793
KQESYEKA	8	Unmodified	_KQESYEKA_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2961120605469	2	491.745639	981.476725	0.04577	2.2507E-05	-0.045348	-2.23E-05	0.00042242	2.0772E-07	491.7454289883088	18.352	0.17006	18.294	18.171	18.341	-0.058172					9	5	2	0	0	0	0.34378	1	1875	1875		3.9444	0.66309	1	22939			19542	4101	11032	11033	24693	24693					-0.014754132074244808
KQEVRVVRS	9	Unmodified	_KQEVRVVRS_					0	0	0			REV__ENSG00000147613|ENST00000276616|PSKH2	REV__ENSG00000147613|ENST00000276616|PSKH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.2529907226562	2	550.830372	1099.64619	0.075387	4.1526E-05	-0.047724	-2.6288E-05	0.027663	1.5238E-05	550.8304075603954	14.413	0.22433	14.413	14.307	14.531	0					10	7	2	0	0	0	0.26031	1	722	722		3.5965	0	1	27715	+		19543	16397	11033	11034	24694	24694					0.1003532786580763
KQFEPNDFYLK	11	Unmodified	_KQFEPNDFYLK_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.28662109375	3	476.910115	1427.70852	0.42633	0.00020332	-0.005323	-2.5386E-06	0.42101	0.00020078	476.91006127733027	46.755	0.48682	46.808	46.527	47.014	0.052574					35	17	3	0	0	0	0.32668	1	10591	10591		17.42	13.303	1	399190			19544	1663	11034	11035	24695	24695					0.011770094234634598
KQFEPNDFYLK	11	Unmodified	_KQFEPNDFYLK_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	476.910115	1427.70852	0.45802	0.00021843	0.64885	0.00030945	1.1069	0.00052788	476.9102038353567	46.922	0.43354	46.922	46.703	47.137	0	0.098224	0.00068191	NaN	20.12	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573540			19545	1663	11034	11035							0.011770094234634598
KQFEPNDFYLK	11	Unmodified	_KQFEPNDFYLK_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	476.910115	1427.70852	0.38584	0.00018401	0.024194	1.1538E-05	0.41003	0.00019555	476.9102034263166	46.687	0.57667	46.741	46.516	47.093	0.054371	-0.082514	-0.00021181	NaN	20.12	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	528680			19546	1663	11034	11035							0.011770094234634598
KQFHAWGF	8	Unmodified	_KQFHAWGF_					0	0	0			REV__ENST00000535009.5_1_11:68816453-68846494:+|nuORF	REV__ENST00000535009.5_1_11:68816453-68846494:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.75604248046875	2	510.756144	1019.49774	-0.0024718	-1.2625E-06	0.47202	0.00024109	0.46955	0.00023983	510.75600179208766	12.256	0.13414	12.159	12.072	12.206	-0.096607					9	4	3	0	0	0	0.46461	1	83	83		0.79363	0	1	43479	+		19547	16972	11035	11036	24696	24696					-0.011233583172383987
KQFHAWGF	8	Unmodified	_KQFHAWGF_					0	0	0			REV__ENST00000535009.5_1_11:68816453-68846494:+|nuORF	REV__ENST00000535009.5_1_11:68816453-68846494:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	510.756144	1019.49774	-0.036104	-1.844E-05	0.056056	2.8631E-05	0.019952	1.0191E-05	510.7561982366239	12.256	0.19303	12.256	12.171	12.364	0	0.057092	-0.00010407	NaN	0.79363	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46293	+		19548	16972	11035	11036							-0.011233583172383987
KQFHAWGF	8	Unmodified	_KQFHAWGF_					0	0	0			REV__ENST00000535009.5_1_11:68816453-68846494:+|nuORF	REV__ENST00000535009.5_1_11:68816453-68846494:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	510.756144	1019.49774	-0.0024718	-1.2625E-06	0.47202	0.00024109	0.46955	0.00023983	510.75600179208766	12.256	0.13414	12.159	12.072	12.206	-0.096607	-0.039946	0.00032085	NaN	0.79363	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43479	+		19549	16972	11035	11036							-0.011233583172383987
KQFLLIWFV	9	Unmodified	_KQFLLIWFV_					0	0	0		ENST00000519043.5_1_3:9427277-9427385:-|nuORF	ENST00000519043.5_1_3:9427277-9427385:-|nuORF	ENST00000519043.5_1_3:9427277-9427385:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8567504882812	2	597.357702	1192.70085	0.5263	0.00031439	0.39545	0.00023622	0.92175	0.00055062	597.3585424498953	90.185	1.4279	90.185	89.495	90.923	0					313	115	4	0	0	0	0.34536	1	24036	24036		2.0598	2.0598	1	1038300			19550	11451	11036	11037	24697	24697					0.11220946684488808
KQFLLIWFV	9	Unmodified	_KQFLLIWFV_					0	0	0		ENST00000519043.5_1_3:9427277-9427385:-|nuORF	ENST00000519043.5_1_3:9427277-9427385:-|nuORF	ENST00000519043.5_1_3:9427277-9427385:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8577270507812	2	597.357702	1192.70085	0.51945	0.0003103	0.021496	1.2841E-05	0.54095	0.00032314	597.3586078268477	90.167	1.2978	90.167	89.63	90.927	0.0003891					299	105	4	0	0	0	0.34681	1	24009	24009		1.8442	1.8442	1	970830			19551	11451	11036	11037	24698	24698					0.11220946684488808
KQFQVKATEE	10	Unmodified	_KQFQVKATEE_					0	0	0			REV__ENST00000467622.2_1_12:110874465-110874910:-|nuORF	REV__ENST00000467622.2_1_12:110874465-110874910:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2311096191406	3	403.215427	1206.62445	-0.4496	-0.00018129	0.37546	0.00015139	-0.074135	-2.9892E-05	403.2153412501555	14.637	0.34622	14.533	14.396	14.742	-0.10466					20	11	3	0	0	0	0.31691	1	827	827		5.4027	0.35519	1	28373	+		19552	21305	11037	11038	24699	24699					0.02940478326581797
KQFQVKATEE	10	Unmodified	_KQFQVKATEE_					0	0	0			REV__ENST00000467622.2_1_12:110874465-110874910:-|nuORF	REV__ENST00000467622.2_1_12:110874465-110874910:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	403.215427	1206.62445	-0.44509	-0.00017947	0.39029	0.00015737	-0.054805	-2.2098E-05	403.21565722323476	14.58	0.29863	14.514	14.4	14.699	-0.066068	-0.0094398	4.2764E-06	NaN	5.4027	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20545	+		19553	21305	11037	11038							0.02940478326581797
KQFRMKQVLN	10	Unmodified	_KQFRMKQVLN_					0	0	0		nc|ENSG00000163214|Q6P158-3|DHX57;ENST00000479345.2_1_2:39084268-39090579:-|nuORF	nc|ENSG00000163214|Q6P158-3|DHX57	nc|ENSG00000163214|Q6P158-3|DHX57	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.2975463867188	2	646.368807	1290.72306	0.080566	5.2075E-05	2.7566	0.0017818	2.8372	0.0018339	646.3704422259191	12.451	0.19445	12.451	12.332	12.526	0					11	5	3	0	0	0	0.41085	1	114	114		1.4819	0.15237	1	51086			19554	10991	11038	11039	24700	24700					0.08932803090647212
KQGGSLKCIQI	11	Unmodified	_KQGGSLKCIQI_					0	0	0			REV__nc|ENSG00000204574|Q8NE71-2|ABCF1	REV__nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.845947265625	2	587.834265	1173.65398	0.33958	0.00019962	-0.90272	-0.00053065	-0.56314	-0.00033103	587.8338645953378	29.431	0.37803	29.443	29.244	29.622	0.012266					16	12	2	0	0	0	0.38187	1	5303	5303		13.615	0.5724	1	49554	+		19555	18952	11039	11040	24701	24701					0.07409719071074505
KQGILLVRFN	10	Unmodified	_KQGILLVRFN_					0	0	0		ENSG00000167011|ENST00000300303|NAT16	ENSG00000167011|ENST00000300303|NAT16	ENSG00000167011|ENST00000300303|NAT16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8281860351562	2	594.36659	1186.71863	0.485	0.00028827	1.989	0.0011822	2.474	0.0014705	594.3678051524666	39.895	0.55866	39.994	39.868	40.427	0.099407					25	19	2	0	0	0	0.32033	1	8502	8502		3.5965	0	1	155310			19556	6142	11040	11041	24702	24702					0.13273661939388148
KQGKQLVMFV	10	Unmodified	_KQGKQLVMFV_					0	0	0			REV__nc|ENSG00000187288|Q96AQ7-2|CIDEC	REV__nc|ENSG00000187288|Q96AQ7-2|CIDEC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3447265625	2	589.341726	1176.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.12	1	119.14	118.64	119.64	0.026253								0	0	0	0.38126	1	30822	30822		1.6526	0.17072	1		+		19557	18501	11041	11042	24703	24703					0.0876321093903698
KQGKYEVLK	9	Unmodified	_KQGKYEVLK_					0	0	0			REV__nc|ENSG00000006757|P41247-2|PNPLA4	REV__nc|ENSG00000006757|P41247-2|PNPLA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.3321533203125	2	546.824224	1091.63389	0.61491	0.00033625	-1.7036	-0.00093154	-1.0886	-0.00059529	546.823334743242	30.496	0.39676	30.524	30.324	30.721	0.027946					22	13	2	0	0	0	0.25202	1	5585	5585		10.824	0	1	193900	+		19558	13374	11042	11043	24704	24704					0.09174291402746348
KQGPVPEI	8	Unmodified	_KQGPVPEI_					0	0	0			REV__ENST00000480675.5_1_1:45390817-45407328:-|nuORF	REV__ENST00000480675.5_1_1:45390817-45407328:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.2377624511719	2	434.25036	866.486168	-0.06325	-2.7466E-05	-0.65319	-0.00028365	-0.71644	-0.00031112	434.24987706345667	26.789	0.50832	26.768	26.592	27.1	-0.021412					30	17	2	0	0	0	0.42446	1	4468	4468		14.582	0	1	151370	+		19559	13308	11043	11044	24705	24705					0.04758399868762808
KQGVKSVAGK	10	Unmodified	_KQGVKSVAGK_					0	0	0		nc|ENSG00000149182|Q8N6H7-3|ARFGAP2;nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ENSG00000149182|ENST00000524782|ARFGAP2	nc|ENSG00000149182|Q8N6H7-3|ARFGAP2	nc|ENSG00000149182|Q8N6H7-3|ARFGAP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2907409667969	2	501.308741	1000.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.844	1	13.844	13.344	14.344	0								0	0	0	0.35216	1	546	546		13.906	0.39817	1				19560	4849	11044	11045	24706	24706					0.10265138088516323
KQHKKNRIIV	10	Unmodified	_KQHKKNRIIV_					0	0	0			REV__ENST00000491313.5_1_10:99116853-99127090:-|nuORF	REV__ENST00000491313.5_1_10:99116853-99127090:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.4266357421875	2	632.404038	1262.79352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.33	1	112.33	111.83	112.83	0								0	0	0	0.38202	1	29202	29202		0.40072	0.050084	1		+		19561	13571	11045	11046	24707	24707					0.17263844470608092
KQHRRKRRREL	11	Unmodified	_KQHRRKRRREL_					0	0	0			REV__ENST00000233379.8_1_2:96079888-96080107:+|nuORF	REV__ENST00000233379.8_1_2:96079888-96080107:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.6572875976562	3	521.657341	1561.95019	0.56594	0.00029523	-0.14924	-7.7851E-05	0.41671	0.00021738	521.6572091274389	49.407	1.7667	49.407	49.105	50.872	0					223	64	5	0	0	0	0.48486	1	11344	11344		0.094841	0	1	4508000	+		19562	19473	11046	11047	24708	24708					0.1916952241360832
KQIREYVLS	9	Unmodified	_KQIREYVLS_					0	0	0		ENSG00000196778|ENST00000641528|OR52K1	ENSG00000196778|ENST00000641528|OR52K1	ENSG00000196778|ENST00000641528|OR52K1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2845458984375	2	568.327131	1134.63971	0.18008	0.00010234	-1.1073	-0.00062932	-0.92723	-0.00052697	568.3265350283709	27.239	0.36343	27.218	27.1	27.464	-0.021412					19	12	2	0	0	0	0.25938	1	4657	4657		0.45834	0	1	51803			19563	7904	11047	11048	24709	24709					0.07777389914417654
KQIREYVLS	9	Unmodified	_KQIREYVLS_					0	0	0		ENSG00000196778|ENST00000641528|OR52K1	ENSG00000196778|ENST00000641528|OR52K1	ENSG00000196778|ENST00000641528|OR52K1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	568.327131	1134.63971	0.12227	6.949E-05	-0.48895	-0.00027788	-0.36668	-0.00020839	568.3269020228025	27.27	0.25904	27.27	27.121	27.38	0	0.026137	0.00046893	NaN	4.3292	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66648			19564	7904	11047	11048							0.07777389914417654
KQKEMVWN	8	Unmodified	_KQKEMVWN_					0	0	0		nc|ENSG00000213085|Q9UL16-2|CFAP45;ENSG00000213085|ENST00000368099|CFAP45	nc|ENSG00000213085|Q9UL16-2|CFAP45	nc|ENSG00000213085|Q9UL16-2|CFAP45	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.806884765625	2	531.773677	1061.5328	0.20615	0.00010962	2.6912	0.0014311	2.8974	0.0015407	531.7752818675632	18.296	0.39774	18.238	18.004	18.402	-0.058174					22	13	2	0	0	0	0.34353	1	1874	1874		4.756	0.42677	1	46425			19565	8332	11048	11049	24710	24710					0.004495164284207931
KQKFLLRFQ	9	Unmodified	_KQKFLLRFQ_					0	0	0		ENST00000424241.1_1_X:65220594-65220756:+|nuORF	ENST00000424241.1_1_X:65220594-65220756:+|nuORF	ENST00000424241.1_1_X:65220594-65220756:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.7877807617188	2	604.369133	1206.72371	0.13184	7.9678E-05	-2.8746	-0.0017373	-2.7427	-0.0016576	604.8692458151976	12.498	0.12243	12.498	12.433	12.555	0					5	3	2	0	0	0	0.26257	1	132	132		0.52476	0.066424	1	10840			19566	10394	11049	11050	24711	24711					0.12861965801994302
KQKKQQRLEP	10	Unmodified	_KQKKQQRLEP_					0	0	0		ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.882568359375	2	641.883136	1281.75172	0.42806	0.00027476	-0.44881	-0.00028808	-0.020752	-1.3321E-05	641.8827522395377	102.34	0.57393	102.33	101.91	102.48	-0.0033722					134	84	2	0	0	0	0.41168	1	27225	27225		1.3295	0.36726	1	154850			19567	866	11050	11051	24712	24712					0.12211243991418996
KQKKRRRRMM	10	Unmodified	_KQKKRRRRMM_					0	0	0			REV__ENST00000325083.12_1_8:17815084-17817658:+|nuORF	REV__ENST00000325083.12_1_8:17815084-17817658:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.75274658203125	3	473.287091	1416.83944	0.14438	6.8332E-05	3.1912	0.0015103	3.3355	0.0015787	473.6232903097817	26.601	0.53855	26.563	26.37	26.909	-0.038671					30	18	2	0	0	0	0.32051	1	4373	4373		3.8763	1.97	1	173930	+		19568	19990	11051	11052	24713	24713					0.14769843109525027
KQKKRRRRMM	10	Unmodified	_KQKKRRRRMM_					0	0	0			REV__ENST00000325083.12_1_8:17815084-17817658:+|nuORF	REV__ENST00000325083.12_1_8:17815084-17817658:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.75274658203125	3	473.287091	1416.83944	0.40983	0.00019397	3.1647	0.0014978	3.5745	0.0016918	473.2880534997662	26.653	0.45403	26.631	26.439	26.893	-0.022236					38	15	4	0	0	0	0.32051	1	4376	4376		3.8763	2.2841	1	170450	+		19569	19990	11051	11052	24714	24714					0.14769843109525027
KQKLLENIKQ	10	Unmodified	_KQKLLENIKQ_					0	0	0			REV__ROCK2|p.K892Tfs*35|1|0.04|ENSG00000134318|chr2:11201358-11201359|-/AGGGAGCTTAAAGAAGAATG|frameshift_variant	REV__ROCK2|p.K892Tfs*35|1|0.04|ENSG00000134318|chr2:11201358-11201359|-/AGGGAGCTTAAAGAAGAATG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.2518310546875	2	621.382437	1240.75032	0.25064	0.00015574	-0.27058	-0.00016813	-0.01994	-1.2391E-05	621.382048920372	43.69	0.39138	43.774	43.604	43.995	0.083996					34	14	3	0	0	0	0.30815	1	9644	9644		31.268	6.3113	1	740160	+		19570	15666	11052	11053	24715	24715					0.13957609902649892
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8434448242188	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.46	1	111.46	110.96	111.96	0								0	0	0	0.25858	1	28989	28989		3.5965	0.60125	1				19571	2546	11053	11054	24716	24716					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.842041015625	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.16	1	112.16	111.66	112.66	0								0	0	0	0.25858	1	29164	29164		3.5965	1.7523	1				19572	2546	11053	11054	24717	24717					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8432006835938	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.15	1	113.15	112.65	113.65	0								0	0	0	0.25858	1	29393	29393		3.5965	1.7523	1				19573	2546	11053	11054	24718	24718					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8432006835938	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.29	1	113.29	112.79	113.79	0								0	0	0	0.25858	1	29428	29428		3.5965	1.7523	1				19574	2546	11053	11054	24719	24719					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8425903320312	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.69	1	113.69	113.19	114.19	0								0	0	0	0.25858	1	29525	29525		3.5965	0.60125	1				19575	2546	11053	11054	24720	24720					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8425903320312	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.04	1	114.04	113.54	114.54	0								0	0	0	0.25858	1	29603	29603		3.5965	0.31518	1				19576	2546	11053	11054	24721	24721					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8432006835938	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.18	1	114.18	113.68	114.68	0								0	0	0	0.25858	1	29632	29632		3.5965	1.7523	1				19577	2546	11053	11054	24722	24722					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8427734375	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.77	1	114.77	114.27	115.27	0								0	0	0	0.25858	1	29766	29766		3.5965	1.7523	1				19578	2546	11053	11054	24723	24723					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8428955078125	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.01	1	115.01	114.51	115.51	0								0	0	0	0.25858	1	29819	29819		3.5965	1.7523	1				19579	2546	11053	11054	24724	24724					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8428955078125	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.26	1	116.26	115.76	116.76	0								0	0	0	0.25858	1	30102	30102		3.5965	1.7523	1				19580	2546	11053	11054	24725	24725					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8428344726562	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.55	1	118.55	118.05	119.05	0								0	0	0	0.25858	1	30619	30619		3.5965	1.7523	1				19581	2546	11053	11054	24726	24726					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8434448242188	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.38	1	111.37	110.87	111.87	-0.013939								0	0	0	0.25197	1	28983	28983		5.7319	1.7875	1				19582	2546	11053	11054	24727	24727					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.843017578125	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.78	1	112.76	112.26	113.26	-0.017303								0	0	0	0.25858	1	29330	29330		3.5965	0.60125	1				19583	2546	11053	11054	24728	24728					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8427124023438	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.13	1	113.11	112.61	113.61	-0.017303								0	0	0	0.25858	1	29412	29412		3.5965	0.60125	1				19584	2546	11053	11054	24729	24729					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.84326171875	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.29	1	113.27	112.77	113.77	-0.017303								0	0	0	0.25858	1	29452	29452		3.5965	0.31518	1				19585	2546	11053	11054	24730	24730					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8434448242188	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.65	1	113.63	113.13	114.13	-0.017303								0	0	0	0.25858	1	29537	29537		3.5965	0.60125	1				19586	2546	11053	11054	24731	24731					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8429565429688	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.77	1	114.75	114.25	115.25	-0.019096								0	0	0	0.25858	1	29785	29785		3.5965	0.60125	1				19587	2546	11053	11054	24732	24732					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8427124023438	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.65	1	117.63	117.13	118.13	-0.024147								0	0	0	0.25858	1	30445	30445		3.5965	1.7523	1				19588	2546	11053	11054	24733	24733					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.842529296875	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.63	1	118.61	118.11	119.11	-0.024147								0	0	0	0.25858	1	30658	30658		3.5965	1.7523	1				19589	2546	11053	11054	24734	24734					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8433227539062	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.72	1	113.73	113.23	114.23	0.014824								0	0	0	0.25858	1	29585	29585		3.5965	0.60125	1				19590	2546	11053	11054	24735	24735					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8428955078125	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.29	1	114.31	113.81	114.81	0.016708								0	0	0	0.25858	1	29723	29723		3.5965	0.60125	1				19591	2546	11053	11054	24736	24736					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8435668945312	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.32	1	116.34	115.84	116.84	0.020988								0	0	0	0.25858	1	30185	30185		3.5965	1.7523	1				19592	2546	11053	11054	24737	24737					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.84326171875	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.85	1	116.87	116.37	117.37	0.020988								0	0	0	0.25858	1	30307	30307		3.5965	1.7523	1				19593	2546	11053	11054	24738	24738					0.10690847091268552
KQKLLEYKT	9	Unmodified	_KQKLLEYKT_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8432006835938	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.18	1	117.21	116.71	117.71	0.023476								0	0	0	0.25858	1	30386	30386		3.5965	1.7523	1				19594	2546	11053	11054	24739	24739					0.10690847091268552
KQKMNRFQQK	10	Unmodified	_KQKMNRFQQK_					0	0	0			REV__nc|ENSG00000215864|P0C2Y1|NBPF7P	REV__nc|ENSG00000215864|P0C2Y1|NBPF7P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.9150390625	3	445.915318	1334.72412	0.36216	0.00016149	-2.1811	-0.00097258	-1.8189	-0.00081109	445.91491334425245	21.288	2.0442	21.178	20.753	22.797	-0.11003					215	73	6	0	0	0	0.2361	2	2787	2787;2830		28.234	8.6077	1	7082700	+		19595	23192	11054	11055	24740;24741	24740					0.07015017459525552
KQKMNRFQQK	10	Unmodified	_KQKMNRFQQK_					0	0	0			REV__nc|ENSG00000215864|P0C2Y1|NBPF7P	REV__nc|ENSG00000215864|P0C2Y1|NBPF7P	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	445.915318	1334.72412	0.36216	0.00016149	-2.1811	-0.00097258	-1.8189	-0.00081109	445.91491334425245	21.288	2.0442	21.178	20.753	22.797	-0.11003	0.032089	-7.1854E-06	NaN	28.234	215	73	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7082700	+		19596	23192	11054	11055							0.07015017459525552
KQKNAEQK	8	Unmodified	_KQKNAEQK_					0	0	0			REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	REV__nc|ENSG00000114805|Q4KWH8-2|PLCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.27490234375	2	487.274898	972.535243	-0.039677	-1.9333E-05	0.29772	0.00014507	0.25804	0.00012574	487.2751155117028	14.377	0.71334	14.377	13.962	14.676	0					45	24	3	0	0	0	0.23736	1	709	709		37.974	0	1	311810	+		19597	14847	11055	11056	24742	24742					0.04787688157705361
KQLAERMAI	9	Unmodified	_KQLAERMAI_					0	0	0		ENSG00000183778|ENST00000684187|B3GALT5	ENSG00000183778|ENST00000684187|B3GALT5	ENSG00000183778|ENST00000684187|B3GALT5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.312255859375	2	530.302601	1058.59065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.046	1	19.93	19.43	20.43	-0.11592								0	0	0	0.21009	1	2420	2420		19.257	0	1				19598	7405	11056	11057	24743	24743					0.06369778353814581
KQLELLLPTVE	11	Unmodified	_KQLELLLPTVE_					0	0	0			REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8826904296875	2	641.884478	1281.7544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.74	1	100.73	100.23	101.23	-0.006897								0	0	0	0.37382	1	26934	26934		2.9952	0.26005	1		+		19599	14210	11057	11058	24744	24744					0.12479654605704127
KQLKKRQT	8	Unmodified	_KQLKKRQT_					0	0	0			REV__ENSG00000136002|ENST00000409359|ARHGEF4	REV__ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3299560546875	2	515.330008	1028.64546	0.040854	2.1053E-05	-0.59659	-0.00030744	-0.55574	-0.00028639	515.3295132471598	16.076	0.26347	15.961	15.811	16.075	-0.11434					15	8	2	0	0	0	0.34353	1	1231	1231		4.756	0	1	38450	+		19600	15777	11058	11059	24745	24745					0.1322853321673847
KQLKKRQT	8	Unmodified	_KQLKKRQT_					0	0	0			REV__ENSG00000136002|ENST00000409359|ARHGEF4	REV__ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.7667846679688	2	515.330008	1028.64546	0.048573	2.5031E-05	-0.51797	-0.00026693	-0.4694	-0.00024189	515.329720422094	16.027	0.28659	15.964	15.808	16.094	-0.062533					17	9	2	0	0	0	0.34414	1	1209	1209		2.0598	0	1	33834	+		19601	15777	11058	11059	24746	24746					0.1322853321673847
KQLKKRQT	8	Unmodified	_KQLKKRQT_					0	0	0			REV__ENSG00000136002|ENST00000409359|ARHGEF4	REV__ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	515.330008	1028.64546	0.14023	7.2263E-05	-0.80459	-0.00041463	-0.66436	-0.00034236	515.3294229405778	15.97	0.30687	15.97	15.816	16.123	0	0.0049666	-0.00020107	NaN	4.756	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35373	+		19602	15777	11058	11059							0.1322853321673847
KQLLFGLRHKM	11	Unmodified	_KQLLFGLRHKM_					0	0	0			REV__ENST00000491263.1_1_1:163039244-163042290:+|nuORF	REV__ENST00000491263.1_1_1:163039244-163042290:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.60791015625	3	457.607825	1369.80165	0.088138	4.0333E-05	-0.41796	-0.00019126	-0.32982	-0.00015093	457.6080714875058	93.286	1.4437	93.373	92.522	93.965	0.08667					252	118	3	0	0	0	0.48173	1	24860	24860		0.50596	0	1	460720	+		19603	14958	11059	11060	24747	24747					0.1315365539569484
KQLQIILSK	9	Unmodified	_KQLQIILSK_					0	0	0		ENST00000508066.1_1_4:36162071-36231213:-|nuORF;ENSG00000047365|ENST00000303965|ARAP2	ENST00000508066.1_1_4:36162071-36231213:-|nuORF	ENST00000508066.1_1_4:36162071-36231213:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7708740234375	2	535.850242	1069.68593	0.9807	0.00052551	-0.84024	-0.00045024	0.14046	7.5264E-05	535.8499565367493	47.377	0.26242	47.432	47.36	47.622	0.054371					13	9	2	0	0	0	0.24636	1	10771	10771		16.149	0	1	280450			19604	630	11060	11061	24748	24748					0.15387454816504942
KQLQSAPQKF	10	Unmodified	_KQLQSAPQKF_					0	0	0			REV__ENST00000435590.1_1_21:46097057-46097849:-|nuORF	REV__ENST00000435590.1_1_21:46097057-46097849:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.811279296875	2	587.83258	1173.65061	0.34026	0.00020002	-0.25997	-0.00015282	0.080295	4.72E-05	587.8322953090011	57.7	1.2888	57.786	57.047	58.336	0.085621					101	46	4	0	0	0	0.29978	1	14055	14055		20.454	4.3045	1	1337400	+		19605	20997	11061	11062	24749	24749					0.0707279228868174
KQLQSLKEN	9	Unmodified	_KQLQSLKEN_					0	0	0			REV__ENSG00000067900|ENST00000399799|ROCK1	REV__ENSG00000067900|ENST00000399799|ROCK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.8193969726562	2	544.308938	1086.60332	0.62608	0.00034078	-0.016425	-8.9403E-06	0.60965	0.00033184	544.3089647692401	32.474	0.26729	32.529	32.415	32.682	0.054371					13	9	2	0	0	0	0.24848	1	6224	6224		13.906	0.86358	1	96306	+		19606	13696	11062	11063	24750	24750					0.06348513017701407
KQLRRWLRWRK	11	Unmodified	_KQLRRWLRWRK_					0	0	0			REV__ENST00000411552.5_1_7:30498788-30515497:-|nuORF	REV__ENST00000411552.5_1_7:30498788-30515497:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3368530273438	3	542.670699	1624.99027	0.35075	0.00019034	-0.17882	-9.7039E-05	0.17193	9.33E-05	542.6707108405824	98.009	0.17033	98.071	98.01	98.181	0.061516					28	21	2	0	0	0	0.33352	1	26245	26245		0.08335	0.08335	1	349830	+		19607	20775	11063	11064	24751	24751					0.20277069084158938
KQLSEKAKQ	9	Unmodified	_KQLSEKAKQ_					0	0	0			REV__nc|ENSG00000009790|Q9Y228-3|TRAF3IP3	REV__nc|ENSG00000009790|Q9Y228-3|TRAF3IP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3121337890625	2	530.31148	1058.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.115	1	20.115	19.615	20.615	0								0	0	0	0.19013	1	2439	2439		25.399	0.40835	1		+		19608	13408	11064	11065	24752	24752					0.08144816880303551
KQLSEKAKQ	9	Unmodified	_KQLSEKAKQ_					0	0	0			REV__nc|ENSG00000009790|Q9Y228-3|TRAF3IP3	REV__nc|ENSG00000009790|Q9Y228-3|TRAF3IP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3123779296875	2	530.31148	1058.60841	0.71726	0.00038037	-0.337	-0.00017871	0.38026	0.00020166	530.3114346689331	20.065	1.0374	20.009	19.544	20.582	-0.055693					68	37	4	0	0	0	0.18803	1	2479	2479		25.399	0.40835	1	698400	+		19609	13408	11064	11065	24753	24753					0.08144816880303551
KQLSYAEKF	9	Unmodified	_KQLSYAEKF_					0	0	0			REV__ENSG00000000460|ENST00000359326|C1orf112	REV__ENSG00000000460|ENST00000359326|C1orf112	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2914428710938	2	557.300581	1112.58661	-0.01279	-7.1279E-06	-0.5559	-0.0003098	-0.56869	-0.00031693	557.3011295592836	61.891	0.61367	61.883	61.528	62.142	-0.0085526					93	21	8	0	0	0	0.19747	1	15212	15212		24.021	3.5669	1	1147500	+		19610	13312	11065	11066	24754	24754					0.03482012131757983
KQLSYAEKF	9	Unmodified	_KQLSYAEKF_					0	0	0			REV__ENSG00000000460|ENST00000359326|C1orf112	REV__ENSG00000000460|ENST00000359326|C1orf112	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	557.300581	1112.58661	-0.044586	-2.4848E-05	1.2224	0.00068124	1.1778	0.00065639	557.3011781727935	61.814	1.0373	61.911	61.566	62.603	0.096989	0.0096744	0.00024128	NaN	24.021	56	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	993530	+		19611	13312	11065	11066							0.03482012131757983
KQLSYAEKF	9	Unmodified	_KQLSYAEKF_					0	0	0			REV__ENSG00000000460|ENST00000359326|C1orf112	REV__ENSG00000000460|ENST00000359326|C1orf112	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	557.300581	1112.58661	-0.01279	-7.1279E-06	-0.5559	-0.0003098	-0.56869	-0.00031693	557.3011295592836	61.891	0.61367	61.883	61.528	62.142	-0.0085526	-0.018371	-0.0017408	NaN	24.021	93	21	8	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1147500	+		19612	13312	11065	11066							0.03482012131757983
KQLVLTSLETL	11	Unmodified	_KQLVLTSLETL_					0	0	0		ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.2320251464844	3	415.586861	1243.73875	0.092794	3.8564E-05	-0.74197	-0.00030835	-0.64917	-0.00026979	415.5861789823587	16.14	0.17076	16.078	16.006	16.177	-0.062534					6	5	2	0	0	0	0.32951	1	1233	1233		10.315	5.2677	1	9828.4			19613	8183	11066	11067	24755	24755					0.12663368088647076
KQLVNIKREKV	11	Unmodified	_KQLVNIKREKV_					0	0	0			REV__ENSG00000187672|ENST00000288221|ERC2	REV__ENSG00000187672|ENST00000288221|ERC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2886962890625	3	452.289149	1353.84562	-0.17317	-7.8323E-05	-0.51011	-0.00023072	-0.68328	-0.00030904	452.288888509479	12.75	0.44611	12.75	12.612	13.058	0					42	15	4	0	0	0	0.47713	1	213	213		1.1098	0	1	285960	+		19614	18513	11067	11068	24756	24756					0.1828496309365164
KQLYAHKLKN	10	Unmodified	_KQLYAHKLKN_					0	0	0		L1PBa_dup1914|chr16:20454552-20458311:+|1.873729371871474|0.2397336971051269|2.97|524.0|63|2|sense	L1PBa_dup1914|chr16:20454552-20458311:+|1.873729371871474|0.2397336971051269|2.97|524.0|63|2|sense	L1PBa_dup1914|chr16:20454552-20458311:+|1.873729371871474|0.2397336971051269|2.97|524.0|63|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.868408203125	2	621.869497	1241.72444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.277	1	91.278	90.778	91.778	0.00046539								0	0	0	0.38126	1	24221	24221		1.6526	0.17072	1				19615	12500	11068	11069	24757	24757					0.11324760451020666
KQLYRYAERK	10	Unmodified	_KQLYRYAERK_					0	0	0			REV__ENST00000554744.1_1_14:81964730-81972475:-|nuORF	REV__ENST00000554744.1_1_14:81964730-81972475:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.743896484375	3	452.257849	1353.75172	-0.13608	-6.1541E-05	0.47731	0.00021587	0.34123	0.00015433	452.25819204754293	27.619	0.8795	27.598	27.382	28.261	-0.021412					80	30	4	0	0	0	0.32034	1	4828	4828		2.6312	0.19645	1	569790	+		19616	13745	11069	11070	24758	24758					0.08899243991413641
KQMEQVAQFLK	11	Oxidation (M)	_KQM(Oxidation (M))EQVAQFLK_		KQM(1)EQVAQFLK		KQM(55)EQVAQFLK	0	0	1		ENSG00000149591|ENST00000392951|TAGLN;ENST00000533863.1_2_11:117074025-117074655:+|nuORF	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.9109802246094	3	455.91135	1364.71222	-0.45951	-0.00020949	-0.25898	-0.00011807	-0.71849	-0.00032757	455.9112538153626	35.229	0.54762	35.305	35.043	35.59	0.075306					61	19	4	0	0	0	0.044534	1	7043	7043		54.823	46.536	1	1137400			19617	4881	11070	11071	24759	24759		605			0.04445355925668082
KQMWEILRRKD	11	Unmodified	_KQMWEILRRKD_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.634521484375	3	501.613527	1501.81875	0.28168	0.0001413	0.64471	0.0003234	0.9264	0.00046469	501.61381639759264	93.889	0.17414	93.976	93.872	94.046	0.086678					19	14	2	0	0	0	0.33296	1	25003	25003		1.2148	0.51716	1	105890			19618	1162	11071	11072	24760	24760					0.0879153121084073
KQNGHIKFL	9	Unmodified	_KQNGHIKFL_					0	0	0		nc|ENSG00000140612|P67812-2|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;nc|ENSG00000226098|P0C7V7|SEC11B;nc|ENSG00000140612|P67812-3|SEC11A	nc|ENSG00000140612|P67812-2|SEC11A	nc|ENSG00000140612|P67812-2|SEC11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7913208007812	2	542.816733	1083.61891	0.43032	0.00023359	-0.75175	-0.00040806	-0.32143	-0.00017448	542.8161086082049	24.534	0.50241	24.534	24.34	24.843	0					30	16	2	0	0	0	0.25202	1	3813	3813		10.824	0	1	89520			19619	4324	11072	11073	24761	24761					0.08044844325422673
KQNKRSQY	8	Unmodified	_KQNKRSQY_					0	0	0		ENST00000533654.5_1_1:150192985-150202975:-|nuORF	ENST00000533654.5_1_1:150192985-150202975:-|nuORF	ENST00000533654.5_1_1:150192985-150202975:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8187866210938	2	526.285797	1050.55704	0.16119	8.4831E-05	-0.57186	-0.00030096	-0.41068	-0.00021613	526.2855556232445	12.693	0.26001	12.693	12.555	12.815	0					13	8	2	0	0	0	0.34337	1	202	202		5.2307	0	1	25703			19620	11652	11073	11074	24762	24762					0.03378492906290376
KQNKRSQY	8	Unmodified	_KQNKRSQY_					0	0	0		ENST00000533654.5_1_1:150192985-150202975:-|nuORF	ENST00000533654.5_1_1:150192985-150202975:-|nuORF	ENST00000533654.5_1_1:150192985-150202975:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8187866210938	2	526.285797	1050.55704	0.070514	3.7111E-05	-1.5965	-0.00084024	-1.526	-0.00080313	526.2852229249821	12.721	0.21428	12.654	12.52	12.734	-0.067495					11	6	3	0	0	0	0.34337	1	213	213		5.2307	0.47466	1	28849			19621	11652	11073	11074	24763	24763					0.03378492906290376
KQNPGKFCLLS	11	Unmodified	_KQNPGKFCLLS_					0	0	0		ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.1806335449219	3	412.225269	1233.65398	-0.2486	-0.00010248	0.39823	0.00016416	0.14962	6.1678E-05	412.5597632470305	27.489	0.3205	27.489	27.38	27.7	0					12	10	2	0	0	0	0.3322	1	4655	4655		4.7159	0.83959	1	25391			19622	4407	11074	11075	24764	24764					0.046497190710624636
KQNQNPPTAV	10	Unmodified	_KQNQNPPTAV_					0	0	0			REV__ENST00000478980.1_1_2:27256012-27257182:+|nuORF	REV__ENST00000478980.1_1_2:27256012-27257182:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7715454101562	2	548.790912	1095.56727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.986	1	20.876	20.376	21.376	-0.11003								0	0	0	0.37807	1	2706	2706		2.9952	0.49676	1		+		19623	15060	11075	11076	24765	24765					0.023310558408411453
KQPGLETNILK	11	Unmodified	_KQPGLETNILK_					0	0	0		ENST00000502562.5_1_4:145954424-146019337:-|nuORF	ENST00000502562.5_1_4:145954424-146019337:-|nuORF	ENST00000502562.5_1_4:145954424-146019337:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.367919921875	2	620.86662	1239.71869	0.46672	0.00028977	0.2358	0.0001464	0.70252	0.00043617	620.8667927618429	32.122	0.82357	32.122	31.925	32.749	0					60	29	3	0	0	0	0.17507	1	6094	6094		33.445	1.4074	1	520150			19624	11277	11076	11077	24766	24766					0.10841617148707883
KQPGLETNILK	11	Unmodified	_KQPGLETNILK_					0	0	0		ENST00000502562.5_1_4:145954424-146019337:-|nuORF	ENST00000502562.5_1_4:145954424-146019337:-|nuORF	ENST00000502562.5_1_4:145954424-146019337:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.8666381835938	2	620.86662	1239.71869	0.36286	0.00022529	0.12577	7.8086E-05	0.48863	0.00030337	620.8665726557531	32.041	0.55562	32.083	31.882	32.437	0.042366					44	19	3	0	0	0	0.094007	1	6070	6070		40.725	11.288	1	555350			19625	11277	11076	11077	24767	24767					0.10841617148707883
KQPGLETNILK	11	Unmodified	_KQPGLETNILK_					0	0	0		ENST00000502562.5_1_4:145954424-146019337:-|nuORF	ENST00000502562.5_1_4:145954424-146019337:-|nuORF	ENST00000502562.5_1_4:145954424-146019337:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.8663940429688	2	620.86662	1239.71869	0.23621	0.00014665	0.44354	0.00027538	0.67975	0.00042203	620.8669743976437	32.01	0.8359	32.051	31.89	32.726	0.040989					57	29	3	0	0	0	0.17507	1	6048	6048		33.445	1.4074	1	409440			19626	11277	11076	11077	24768	24768					0.10841617148707883
KQPNLLLKL	9	Unmodified	_KQPNLLLKL_					0	0	0		ENST00000322349.12_1_12:93246066-93246726:-|nuORF	ENST00000322349.12_1_12:93246066-93246726:-|nuORF	ENST00000322349.12_1_12:93246066-93246726:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7855834960938	2	533.852784	1065.69102	0.63671	0.00033991	-1.1442	-0.00061081	-0.50744	-0.0002709	533.8524705906383	48.637	0.55861	48.637	48.268	48.827	0					25	19	2	0	0	0	0.25202	1	11066	11066		10.824	1.4408	1	184310			19627	9392	11077	11078	24769	24769					0.1607975867912046
KQQEEAQLR	9	Unmodified	_KQQEEAQLR_					0	0	0			REV__nc|ENSG00000173218|Q8TAA9-2|VANGL1	REV__nc|ENSG00000173218|Q8TAA9-2|VANGL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.2740478515625	2	565.301644	1128.58874	0.23857	0.00013487	-2.3188	-0.0013108	-2.0803	-0.001176	565.3003231885735	24.886	0.27332	24.886	24.762	25.035	0					13	9	2	0	0	0	0.25612	1	3901	3901		8.1555	1.5252	1	59900	+		19628	17770	11078	11079	24770	24770					0.029584408695427555
KQQEEAQLR	9	Unmodified	_KQQEEAQLR_					0	0	0			REV__nc|ENSG00000173218|Q8TAA9-2|VANGL1	REV__nc|ENSG00000173218|Q8TAA9-2|VANGL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	565.301644	1128.58874	-0.086013	-4.8623E-05	-1.5132	-0.00085544	-1.5993	-0.00090406	565.3007156271354	24.927	0.25066	24.896	24.796	25.047	-0.03141	0.0047715	0.00032345	NaN	8.1555	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70046	+		19629	17770	11078	11079							0.029584408695427555
KQQEGGIVSK	10	Unmodified	_KQQEGGIVSK_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.3010864257812	2	537.301113	1072.58767	0.15281	8.2108E-05	-0.9176	-0.00049303	-0.76478	-0.00041092	537.3005972471101	13.497	0.59003	13.497	13.282	13.872	0					42	20	3	0	0	0	1.0854E-05	1	438	438		150.18	78.254	1	927010			19630	5002	11079	11080	24771	24771					0.054282265006804664
KQQEGGIVSK	10	Unmodified	_KQQEGGIVSK_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.3010864257812	2	537.301113	1072.58767	0.018113	9.732E-06	-0.75877	-0.00040769	-0.74065	-0.00039795	537.3007057176998	13.553	0.66283	13.454	13.276	13.938	-0.099291					56	23	4	0	0	0	0.00014769	1	455	455		132.22	60.298	1	868380			19631	5002	11079	11080	24772	24772					0.054282265006804664
KQQEGGIVSK	10	Unmodified	_KQQEGGIVSK_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.3010864257812	2	537.301113	1072.58767	0.11627	6.247E-05	-1.0187	-0.00054732	-0.90238	-0.00048485	537.3006242596031	13.568	0.5566	13.501	13.359	13.916	-0.067496					35	19	2	0	0	0	0.00039794	2	454	454;502		128.87	66.297	1	869220			19632	5002	11079	11080	24773;24774	24773					0.054282265006804664
KQQEQSLSFV	10	Unmodified	_KQQEQSLSFV_					0	0	0			REV__ENST00000467975.2_1_10:38242072-38260728:-|nuORF	REV__ENST00000467975.2_1_10:38242072-38260728:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.7786254882812	2	597.311677	1192.6088	0.32086	0.00019165	-0.91617	-0.00054724	-0.59531	-0.00035558	597.31134238196	49.645	0.39609	49.666	49.429	49.825	0.020691					25	14	2	0	0	0	0.30093	1	11421	11421		21.537	0	1	207310	+		19633	21312	11080	11081	24775	24775					0.020201918095153815
KQQFYGAPPNK	11	Unmodified	_KQQFYGAPPNK_					0	0	0			REV__ENST00000468692.1_1_1:111730229-111731929:-|nuORF	REV__ENST00000468692.1_1_1:111730229-111731929:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.86053466796875	3	426.559417	1276.65642	-0.20776	-8.8622E-05	-0.11278	-4.8108E-05	-0.32054	-0.00013673	426.5592309253058	24.543	0.59137	24.506	24.169	24.76	-0.036034					45	20	3	0	0	0	0.32774	1	3771	3771		13.519	9.402	1	190840	+		19634	17009	11081	11082	24776	24776					0.029158908003637407
KQQIYRDTT	9	Unmodified	_KQQIYRDTT_					0	0	0			REV__nc|ENSG00000149480|O94776-2|MTA2	REV__nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8041381835938	2	576.80402	1151.59349	0.0093036	5.3663E-06	0.21451	0.00012373	0.22381	0.00012909	576.8041519953318	15.566	0.53066	15.502	15.333	15.864	-0.064413					42	17	3	0	0	0	0.21303	1	1051	1051		21.747	1.293	1	248990	+		19635	16466	11082	11083	24777	24777					0.02375325012326357
KQQQRRLT	8	Unmodified	_KQQQRRLT_					0	0	0			REV__ENSG00000130449|ENST00000252744|ZSWIM6	REV__ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.813720703125	2	529.314889	1056.61522	0.58119	0.00030763	0.30133	0.0001595	0.88252	0.00046713	529.3150337174185	79.591	0.59882	79.562	79.348	79.947	-0.028931					35	22	2	0	0	0	0.34367	1	20659	20659		4.3292	0.73274	1	188050	+		19636	15456	11083	11084	24778	24778					0.08918174551558877
KQQTKAWKK	9	Unmodified	_KQQTKAWKK_					0	0	0		nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ENST00000552994.5_1_12:72037995-72038088:-|nuORF;ZFC3H1|p.Q852Kfs*14|1|0.06|ENSG00000133858|chr12:71633395-71633396|-/AGAAATAATATTGGAATATTTTTATTTT|frameshift_variant	nc|ENSG00000133858|O60293-2|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.3431396484375	2	573.343115	1144.67168	-0.045154	-2.5889E-05	0.22569	0.0001294	0.18054	0.00010351	573.3430873758105	15.327	0.34369	15.327	15.154	15.498	0					25	11	3	0	0	0	0.29638	1	983	983		9.3831	3.6513	1	130360			19637	3734	11084	11085	24779	24779					0.1051280238821164
KQQTKAWKK	9	Unmodified	_KQQTKAWKK_					0	0	0		nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ENST00000552994.5_1_12:72037995-72038088:-|nuORF;ZFC3H1|p.Q852Kfs*14|1|0.06|ENSG00000133858|chr12:71633395-71633396|-/AGAAATAATATTGGAATATTTTTATTTT|frameshift_variant	nc|ENSG00000133858|O60293-2|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.343017578125	2	573.343115	1144.67168	0.14076	8.0701E-05	-0.17448	-0.00010004	-0.033723	-1.9335E-05	573.3428660421405	15.441	0.39798	15.331	15.151	15.549	-0.10982					29	13	3	0	0	0	0.3208	1	1022	1022		5.7319	1.7875	1	109340			19638	3734	11084	11085	24780	24780					0.1051280238821164
KQQTKAWKK	9	Unmodified	_KQQTKAWKK_					0	0	0		nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ENST00000552994.5_1_12:72037995-72038088:-|nuORF;ZFC3H1|p.Q852Kfs*14|1|0.06|ENSG00000133858|chr12:71633395-71633396|-/AGAAATAATATTGGAATATTTTTATTTT|frameshift_variant	nc|ENSG00000133858|O60293-2|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.3431396484375	2	573.343115	1144.67168	-0.035192	-2.0177E-05	0.052629	3.0175E-05	0.017437	9.9975E-06	573.3429967475685	15.426	0.3592	15.361	15.186	15.545	-0.064414					24	11	3	0	0	0	0.29638	1	1024	1024		9.3831	3.6513	1	107520			19639	3734	11084	11085	24781	24781					0.1051280238821164
KQQTKAWKK	9	Unmodified	_KQQTKAWKK_					0	0	0		nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ENST00000552994.5_1_12:72037995-72038088:-|nuORF;ZFC3H1|p.Q852Kfs*14|1|0.06|ENSG00000133858|chr12:71633395-71633396|-/AGAAATAATATTGGAATATTTTTATTTT|frameshift_variant	nc|ENSG00000133858|O60293-2|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	573.343115	1144.67168	-0.045154	-2.5889E-05	0.22569	0.0001294	0.18054	0.00010351	573.3430873758105	15.327	0.34369	15.327	15.154	15.498	0	-0.013203	0.00022319	NaN	9.3831	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130360			19640	3734	11084	11085							0.1051280238821164
KQQTKAWKK	9	Unmodified	_KQQTKAWKK_					0	0	0		nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ENST00000552994.5_1_12:72037995-72038088:-|nuORF;ZFC3H1|p.Q852Kfs*14|1|0.06|ENSG00000133858|chr12:71633395-71633396|-/AGAAATAATATTGGAATATTTTTATTTT|frameshift_variant	nc|ENSG00000133858|O60293-2|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	573.343115	1144.67168	0.14076	8.0701E-05	-0.17448	-0.00010004	-0.033723	-1.9335E-05	573.3428660421405	15.441	0.39798	15.331	15.151	15.549	-0.10982	-0.0084542	-0.00023568	NaN	9.3831	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109340			19641	3734	11084	11085							0.1051280238821164
KQQTKAWKK	9	Unmodified	_KQQTKAWKK_					0	0	0		nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1;ENST00000552994.5_1_12:72037995-72038088:-|nuORF;ZFC3H1|p.Q852Kfs*14|1|0.06|ENSG00000133858|chr12:71633395-71633396|-/AGAAATAATATTGGAATATTTTTATTTT|frameshift_variant	nc|ENSG00000133858|O60293-2|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	573.343115	1144.67168	-0.035192	-2.0177E-05	0.052629	3.0175E-05	0.017437	9.9975E-06	573.3429967475685	15.426	0.3592	15.361	15.186	15.545	-0.064414	0.021657	2.4741E-05	NaN	9.3831	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107520			19642	3734	11084	11085							0.1051280238821164
KQQYMKKF	8	Unmodified	_KQQYMKKF_					0	0	0			REV__nc|ENSG00000204574|Q8NE71-2|ABCF1	REV__nc|ENSG00000204574|Q8NE71-2|ABCF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.785400390625	2	550.799694	1099.58484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.707	1	67.785	67.285	68.285	0.078041								0	0	0	0.33941	1	17009	17009		19.439	2.3261	1		+		19643	18952	11085	11086	24782	24782					0.039026798421446074
KQQYMKKF	8	Unmodified	_KQQYMKKF_					0	0	0			REV__nc|ENSG00000204574|Q8NE71-2|ABCF1	REV__nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.7862548828125	2	550.799694	1099.58484	0.43252	0.00023823	1.2794	0.0007047	1.7119	0.00094294	551.3011643054913	68.148	0.59093	68.129	67.754	68.345	-0.019157					37	20	2	0	0	0	0.39956	1	17102	17102		19.439	2.4967	1	1083800	+		19644	18952	11085	11086	24783	24783					0.039026798421446074
KQRAKFKR	8	Unmodified	_KQRAKFKR_					0	0	0		nc|ENSG00000160050|Q9BUN5-3|CCDC28B;ENST00000483009.1_1_1:32667515-32670212:+|nuORF;ENSG00000160050|ENST00000373602|CCDC28B	nc|ENSG00000160050|Q9BUN5-3|CCDC28B	nc|ENSG00000160050|Q9BUN5-3|CCDC28B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8062744140625	2	531.338167	1060.66178	0.18775	9.9758E-05	2.5205	0.0013392	2.7082	0.001439	531.8408202901211	18.268	0.34586	18.15	18.012	18.358	-0.11739					19	11	2	0	0	0	0.34337	1	1914	1914		5.2307	0.90143	1	27042			19645	12788	11086	11087	24784	24784					0.13387659173508837
KQRMPMPV	8	Unmodified	_KQRMPMPV_					0	0	0		NCOA6|p.V1638Kfs*30|1|0.04|ENSG00000198646|chr20:34741344-34741345|-/TT|frameshift_variant;ENSG00000198646|ENST00000359003|NCOA6	NCOA6|p.V1638Kfs*30|1|0.04|ENSG00000198646|chr20:34741344-34741345|-/TT|frameshift_variant	NCOA6|p.V1638Kfs*30|1|0.04|ENSG00000198646|chr20:34741344-34741345|-/TT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7795715332031	2	493.76734	985.520127	0.27731	0.00013693	-0.30293	-0.00014958	-0.025626	-1.2653E-05	493.7673100196986	33.075	0.58891	33.075	32.837	33.426	0					40	20	3	0	0	0	0.34218	1	6314	6314		5.2307	0.47466	1	304620			19646	8098	11087	11088	24785	24785					0.026787817645185896
KQRNSKLTI	9	Unmodified	_KQRNSKLTI_					0	0	0			REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3329467773438	2	544.332747	1086.65094	0.27223	0.00014819	-0.086731	-4.7211E-05	0.1855	0.00010097	544.332851897598	12.851	0.39968	12.752	12.611	13.011	-0.099291					33	13	4	0	0	0	0.25706	1	259	259		6.7232	0	1	172360	+		19647	13140	11088	11089	24786	24786					0.11108212008548435
KQRSGSLLT	9	Unmodified	_KQRSGSLLT_					0	0	0		ENST00000399262.6_1_10:64974545-64974599:-|nuORF	ENST00000399262.6_1_10:64974545-64974599:-|nuORF	ENST00000399262.6_1_10:64974545-64974599:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2398376464844	2	495.290548	988.566543	0.58093	0.00028773	2.6997	0.0013371	3.2806	0.0016248	495.2923285233374	20.047	0.41307	19.991	19.762	20.175	-0.055693					44	14	4	0	0	0	0.26099	1	2364	2364		2.9952	0.69251	1	164060			19648	10176	11089	11090	24787	24787					0.07180261191820136
KQSAAMPSKQ	10	Unmodified	_KQSAAMPSKQ_					0	0	0			REV__ENST00000440296.2_1_1:176241950-176242272:+|nuORF	REV__ENST00000440296.2_1_1:176241950-176242272:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2819213867188	2	538.281866	1074.54918	0.12351	6.6484E-05	0.14542	7.8278E-05	0.26893	0.00014476	538.2820068698204	12.488	0.3742	12.391	12.206	12.58	-0.096607					25	11	3	0	0	0	0.37454	1	145	145		8.1555	0.8663	1	169620	+		19649	21041	11090	11091	24788	24788					0.014885975944935126
KQSEEHEV	8	Unmodified	_KQSEEHEV_					0	0	0			REV__ENSG00000006459|ENST00000397560|KDM7A	REV__ENSG00000006459|ENST00000397560|KDM7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.2320861816406	2	493.232896	984.451239	0.31193	0.00015385	-1.55	-0.00076449	-1.238	-0.00061063	493.2318985925075	75.92	0.40514	75.973	75.756	76.161	0.053413					22	14	2	0	0	0	0.44389	1	19536	19536		7.9102	1.187	1	258550	+		19650	13360	11091	11092	24789	24789					-0.04160887729847218
KQSKLITHEKF	11	Unmodified	_KQSKLITHEKF_					0	0	0		nc|ENSG00000164989|Q6TFL3-3|CCDC171;ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171	nc|ENSG00000164989|Q6TFL3-3|CCDC171	nc|ENSG00000164989|Q6TFL3-3|CCDC171	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.7926330566406	3	453.597871	1357.77178	0.29992	0.00013604	-0.32693	-0.00014829	-0.027005	-1.225E-05	453.5977216894543	51.323	0.33089	51.333	51.042	51.373	0.0095634					15	12	2	0	0	0	0.3325	1	11885	11885		2.2527	0	1	134210			19651	5914	11092	11093	24790	24790					0.10720994931330097
KQSKQGVEAPM	11	Unmodified	_KQSKQGVEAPM_					0	0	0			REV__ENST00000573309.5_1_16:10971115-11002148:+|nuORF	REV__ENST00000573309.5_1_16:10971115-11002148:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.2893676757812	2	601.81353	1201.61251	0.28908	0.00017397	-0.62328	-0.0003751	-0.3342	-0.00020113	601.8130726750915	46.467	0.40826	46.467	46.324	46.732	0					26	14	2	0	0	0	0.32293	1	10554	10554		18.146	1.0335	1	431610	+		19652	22413	11093	11094	24791	24791					0.019765383117373858
KQSQVRVE	8	Unmodified	_KQSQVRVE_					0	0	0			REV__L1ME1_dup20737|chr11:12960950-12961643:-|1.3458112139085312|0.3279391910638228|2.04|537.0|4|1|sense	REV__L1ME1_dup20737|chr11:12960950-12961643:-|1.3458112139085312|0.3279391910638228|2.04|537.0|4|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7646789550781	2	487.274898	972.535243	-0.039677	-1.9333E-05	0.29772	0.00014507	0.25804	0.00012574	487.2751155117028	14.377	0.71334	14.377	13.962	14.676	0					45	24	3	0	0	0	0.32886	1	602	602		21.747	0	1	311810	+		19653	22794	11094	11095	24792	24792					0.047876881577167296
KQSSKLNKHK	10	Unmodified	_KQSSKLNKHK_					0	0	0		ENST00000425869.1_22:16634899-16650863:+|nuORF	ENST00000425869.1_22:16634899-16650863:+|nuORF	ENST00000425869.1_22:16634899-16650863:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.3583984375	2	599.356754	1196.69895	0.17884	0.00010719	3.9512	0.0023682	4.13	0.0024754	599.3588902329519	14.922	0.19185	14.922	14.789	14.981	0					10	6	2	0	0	0	0.39009	1	883	883		5.2969	0.54088	1	50790			19654	10411	11095	11096	24793	24793					0.1084728592859392
KQSSKLNKHK	10	Unmodified	_KQSSKLNKHK_					0	0	0		ENST00000425869.1_22:16634899-16650863:+|nuORF	ENST00000425869.1_22:16634899-16650863:+|nuORF	ENST00000425869.1_22:16634899-16650863:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	599.356754	1196.69895	0.27289	0.00016356	3.6095	0.0021634	3.8824	0.0023269	599.3590681687386	15.043	0.22062	14.933	14.818	15.038	-0.10981	0.0056345	-0.00021859	NaN	5.2969	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30583			19655	10411	11095	11096							0.1084728592859392
KQSTFGPYLS	10	Unmodified	_KQSTFGPYLS_					0	0	0			REV__nc|ENSG00000113327|P18507-1|GABRG2	REV__nc|ENSG00000113327|P18507-1|GABRG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8209228515625	2	564.290214	1126.56587	0.63613	0.00035896	0.036558	2.0629E-05	0.67269	0.00037959	564.2900164982518	78.469	0.79001	78.469	78.062	78.852	0					55	29	2	0	0	0	0.30586	1	20281	20281		19.257	2.3147	1	136440	+		19656	14806	11096	11097	24794	24794					0.007654217520894235
KQSTFGPYLS	10	Unmodified	_KQSTFGPYLS_					0	0	0			REV__nc|ENSG00000113327|P18507-1|GABRG2	REV__nc|ENSG00000113327|P18507-1|GABRG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.8209838867188	2	564.290214	1126.56587	0.6382	0.00036013	0.44958	0.00025369	1.0878	0.00061383	564.7922656483248	78.442	0.86123	78.5	78.058	78.919	0.058151					55	31	2	0	0	0	0.31358	1	20253	20253		13.906	1.3745	1	160480	+		19657	14806	11096	11097	24795	24795					0.007654217520894235
KQSTFGPYLS	10	Unmodified	_KQSTFGPYLS_					0	0	0			REV__nc|ENSG00000113327|P18507-1|GABRG2	REV__nc|ENSG00000113327|P18507-1|GABRG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.8211669921875	2	564.290214	1126.56587	0.71379	0.00040278	0.17924	0.00010114	0.89303	0.00050393	564.2899932566659	78.365	0.73639	78.335	78.062	78.798	-0.030434					46	27	2	0	0	0	0.30586	1	20253	20253		19.257	2.3147	1	114910	+		19658	14806	11096	11097	24796	24796					0.007654217520894235
KQSVYLMNLRK	11	Unmodified	_KQSVYLMNLRK_					0	0	0		nc|ENSG00000285130|Q16595-2|FXN;ENST00000411625.2_1_9:127730575-127731109:-|nuORF;nc|ENSG00000285130|Q16595-3|FXN;ENSG00000165060|ENST00000484259|FXN	nc|ENSG00000285130|Q16595-2|FXN	nc|ENSG00000285130|Q16595-2|FXN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.6003723144531	3	460.599107	1378.77549	-0.051183	-2.3575E-05	1.7901	0.00082454	1.739	0.00080096	460.6004802557683	27.165	2.4756	27.165	26.586	29.062	0					251	86	6	0	0	0	0.40356	1	4465	4465		10.768	0.75138	1	6175200			19659	5919	11097	11098	24797	24797					0.10125341433581525
KQSVYLMNLRK	11	Unmodified	_KQSVYLMNLRK_					0	0	0		nc|ENSG00000285130|Q16595-2|FXN;ENST00000411625.2_1_9:127730575-127731109:-|nuORF;nc|ENSG00000285130|Q16595-3|FXN;ENSG00000165060|ENST00000484259|FXN	nc|ENSG00000285130|Q16595-2|FXN	nc|ENSG00000285130|Q16595-2|FXN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.60028076171875	3	460.599107	1378.77549	0.14301	6.5872E-05	1.6366	0.00075381	1.7796	0.00081968	460.6004363307771	27.157	2.3135	27.145	26.541	28.854	-0.011562					240	81	6	0	0	0	0.37734	1	4461	4461		14.21	2.5789	1	6753000			19660	5919	11097	11098	24798	24798					0.10125341433581525
KQTPIKKKE	9	Unmodified	_KQTPIKKKE_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3453369140625	2	550.345323	1098.67609	0.0323	1.7776E-05	-0.14192	-7.8107E-05	-0.10962	-6.0331E-05	550.3449591961664	12.256	0.34575	12.256	12.087	12.433	0					23	13	3	0	0	0	0.34923	1	78	78		1.4819	0.79152	1	55471			19661	8057	11098	11099	24799	24799					0.1307026681113257
KQTQVTVQK	9	Unmodified	_KQTQVTVQK_					0	0	0		ENSG00000198382|ENST00000356136|UVRAG	ENSG00000198382|ENST00000356136|UVRAG	ENSG00000198382|ENST00000356136|UVRAG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3125	2	530.31148	1058.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.43	1	20.32	19.82	20.82	-0.11003								0	0	0	0.22666	1	2537	2537		13.906	0	1				19662	8067	11099	11100	24800	24800					0.08144816880326289
KQVDKALEK	9	Unmodified	_KQVDKALEK_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-4|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7614135742188	2	529.813856	1057.61316	0.1138	6.0294E-05	0.25927	0.00013737	0.37308	0.00019766	529.8137873792136	24.976	0.72021	24.944	24.599	25.319	-0.03141					38	24	2	0	0	0	0.25346	1	3957	3957		10.8	0	1	132850			19663	5043	11100	11101	24801	24801					0.0866570102307378
KQVEQGKKE	9	Unmodified	_KQVEQGKKE_					0	0	0			REV__ENSG00000122735|ENST00000242317|DNAI1	REV__ENSG00000122735|ENST00000242317|DNAI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.8010864257812	2	537.301113	1072.58767	0.15281	8.2108E-05	-0.9176	-0.00049303	-0.76478	-0.00041092	537.3005972471101	13.497	0.59003	13.497	13.282	13.872	0					42	20	3	0	0	0	0.20626	1	506	506		22.736	5.6234	1	927010	+		19664	15169	11101	11102	24802	24802					0.054282265006804664
KQVEQGKKE	9	Unmodified	_KQVEQGKKE_					0	0	0			REV__ENSG00000122735|ENST00000242317|DNAI1	REV__ENSG00000122735|ENST00000242317|DNAI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2986450195312	2	537.301113	1072.58767	0.11627	6.247E-05	-1.0187	-0.00054732	-0.90238	-0.00048485	537.3006242596031	13.568	0.5566	13.501	13.359	13.916	-0.067496					35	19	2	0	0	0	0.16283	2	526	526;544		29.082	6.3453	1	869220	+		19665	15169	11101	11102	24803;24804	24803					0.054282265006804664
KQVGQPFQLST	11	Unmodified	_KQVGQPFQLST_					0	0	0		nc|ENSG00000156453|Q08174|PCDH1;ENST00000511044.1_1_5:141242715-141245657:-|nuORF	nc|ENSG00000156453|Q08174|PCDH1	nc|ENSG00000156453|Q08174|PCDH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.8355712890625	2	616.83532	1231.65609	0.3232	0.00019936	0.029001	1.7889E-05	0.3522	0.00021725	616.8353260504009	36.067	1.459	36.067	35.604	37.063	0					147	52	5	0	0	0	0.15687	1	7294	7294		36.506	5.8028	1	7398900			19666	12771	11102	11103	24805	24805					0.04952471080514442
KQVGTKLSV	9	Unmodified	_KQVGTKLSV_					0	0	0		ENST00000382255.7_2_9:1055783-1057270:+|nuORF;ENST00000259622.10_2_9:1056133-1057270:+|nuORF;ENSG00000173253|ENST00000358146|DMRT2;nc|ENSG00000173253|Q9Y5R5-3|DMRT2	ENST00000382255.7_2_9:1055783-1057270:+|nuORF	ENST00000382255.7_2_9:1055783-1057270:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2778015136719	2	480.297842	958.581131	0.80017	0.00038432	-0.21077	-0.00010123	0.5894	0.00028309	480.29771259839697	47.397	0.23179	47.451	47.309	47.541	0.054371					12	8	2	0	0	0	0.23235	1	10764	10764		21.537	0	1	190210			19667	6709	11103	11104	24806	24806					0.10018333339951369
KQVGTKLSV	9	Unmodified	_KQVGTKLSV_					0	0	0		ENST00000382255.7_2_9:1055783-1057270:+|nuORF;ENST00000259622.10_2_9:1056133-1057270:+|nuORF;ENSG00000173253|ENST00000358146|DMRT2;nc|ENSG00000173253|Q9Y5R5-3|DMRT2	ENST00000382255.7_2_9:1055783-1057270:+|nuORF	ENST00000382255.7_2_9:1055783-1057270:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	480.297842	958.581131	0.44889	0.0002156	-0.0032509	-1.5614E-06	0.44564	0.00021404	480.2976608282956	47.467	0.24525	47.467	47.274	47.519	0	0.007779	0.00011984	NaN	21.537	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126670			19668	6709	11103	11104							0.10018333339951369
KQVKQKFQA	9	Unmodified	_KQVKQKFQA_					0	0	0		nc|ENSG00000093009|O75419-2|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-3|CDC45	nc|ENSG00000093009|O75419-2|CDC45	nc|ENSG00000093009|O75419-2|CDC45	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3040771484375	2	552.82984	1103.64513	0.056365	3.116E-05	0.77275	0.0004272	0.82912	0.00045836	552.8303645162389	14.872	0.25289	14.872	14.759	15.012	0					12	8	2	0	0	0	0.25938	1	850	850		4.3292	0	1	55241			19669	1433	11104	11105	24807	24807					0.09745113496910562
KQYFFKRYYY	10	Unmodified	_KQYFFKRYYY_					0	0	0			REV__SIPA1L1|p.E627Rfs*75|1|0.16|ENSG00000197555|chr14:71650395-71650395|G/-|frameshift_variant	REV__SIPA1L1|p.E627Rfs*75|1|0.16|ENSG00000197555|chr14:71650395-71650395|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.274658203125	3	502.590717	1504.75032	0.28761	0.00014455	1.9691	0.00098963	2.2567	0.0011342	502.5916074827085	17.575	0.31876	17.575	17.452	17.771	0					16	10	2	0	0	0	0.32165	1	1676	1676		0.69767	0.24315	1	23210	+		19670	18743	11105	11106	24808	24808					0.018136099026833108
KQYQKHQE	8	Unmodified	_KQYQKHQE_					0	0	0		nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;ENSG00000186566|ENST00000591680|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3191528320312	2	544.777805	1087.54106	0.91679	0.00049944	4.3374	0.0023629	5.2542	0.0028624	544.7793393355837	32.381	0.60886	32.437	32.066	32.675	0.055309					34	21	3	0	0	0	0.34218	1	6191	6191		9.3474	0	1	137190			19671	7627	11106	11107	24809	24809					0.0007878666938267997
KRALIPSSF	9	Unmodified	_KRALIPSSF_					0	0	0			REV__nc|ENSG00000026751|Q9NQ25-7|SLAMF7	REV__nc|ENSG00000026751|Q9NQ25-7|SLAMF7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7877197265625	2	509.805834	1017.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.469	1	23.469	22.969	23.969	0								0	0	0	0.23091	1	3457	3457		12.532	4.6214	1		+		19672	13482	11107	11108	24810	24810					0.08902039576844345
KRAPPHAWV	9	Unmodified	_KRAPPHAWV_					0	0	0		ENST00000554413.1_1_12:97295953-97296385:-|nuORF	ENST00000554413.1_1_12:97295953-97296385:-|nuORF	ENST00000554413.1_1_12:97295953-97296385:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3436279296875	2	531.303793	1060.59303	0.066822	3.5503E-05	-1.0231	-0.00054356	-0.95625	-0.00050806	531.3030524219921	12.829	0.19761	12.729	12.643	12.841	-0.09929					11	6	2	0	0	0	0.26145	1	228	228		2.0598	1.2661	1	29067			19673	11832	11108	11109	24811	24811					0.06515994873780073
KRCFNDQI	8	Unmodified	_KRCFNDQI_					0	0	0			REV__WDR75|p.K411Mfs*20|1|0.05|ENSG00000115368|chr2:189465196-189465197|-/TGATAATTAACTACATCCAAGACAACTTCTGT|frameshift_variant	REV__WDR75|p.K411Mfs*20|1|0.05|ENSG00000115368|chr2:189465196-189465197|-/TGATAATTAACTACATCCAAGACAACTTCTGT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.255859375	2	512.255651	1022.49675	0.24269	0.00012432	0.60657	0.00031072	0.84926	0.00043504	512.2558317135995	41.583	1.4369	41.674	41.299	42.736	0.090248					165	56	4	0	0	0	0.4419	1	9056	9056		8.5933	1.304	1	13280000	+		19674	23356	11109	11110	24812	24812					-0.013599407484548465
KRCGLAWPL	9	Unmodified	_KRCGLAWPL_					0	0	0			REV__nc|ENSG00000133657|Q9H7F0|ATP13A3	REV__nc|ENSG00000133657|Q9H7F0|ATP13A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8116455078125	2	522.294579	1042.57461	-0.017922	-9.3603E-06	1.1074	0.0005784	1.0895	0.00056904	522.2950001193303	12.605	0.23291	12.538	12.377	12.61	-0.067495					14	7	3	0	0	0	0.26117	1	128	128		2.3027	0	1	30255	+		19675	15630	11110	11111	24813	24813					0.05502116907564414
KRCVKGLKM	9	Unmodified	_KRCVKGLKM_					0	0	0		ENSG00000130254|ENST00000252542|SAFB2	ENSG00000130254|ENST00000252542|SAFB2	ENSG00000130254|ENST00000252542|SAFB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.81689453125	2	531.817364	1061.62018	0.49315	0.00026227	-2.0563	-0.0010936	-1.5631	-0.0008313	531.816739436679	81.506	2.0425	81.482	81.161	83.204	-0.02404					202	83	5	0	0	0	0.31038	1	21489	21489		7.2892	2.0586	1	2014200			19676	3461	11111	11112	24814	24814					0.09183019098304612
KRDFPLQV	8	Unmodified	_KRDFPLQV_					0	0	0		ENST00000341423.9_1_13:31034336-31034576:-|nuORF	ENST00000341423.9_1_13:31034336-31034576:-|nuORF	ENST00000341423.9_1_13:31034336-31034576:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2539367675781	2	501.790184	1001.56581	0.29745	0.00014926	0.7126	0.00035758	1.01	0.00050683	501.790449933582	52.015	0.6813	52.015	51.784	52.465	0					48	24	3	0	0	0	0.30988	1	12209	12209		31.268	10.815	1	421750			19677	9524	11112	11113	24815	24815					0.06509466542763676
KRELKEAK	8	Unmodified	_KRELKEAK_					0	0	0			REV__ENSG00000181381|ENST00000682922|DDX60L	REV__ENSG00000181381|ENST00000682922|DDX60L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.3092346191406	2	501.308741	1000.60293	-0.083499	-4.1859E-05	0.76709	0.00038455	0.68359	0.00034269	501.30904922340784	12.863	0.66539	12.795	12.58	13.245	-0.067495					38	22	2	0	0	0	0.41087	1	266	266		18.146	0	1	207500	+		19678	18145	11113	11114	24816	24816					0.10265138088516323
KRELKGLLSC	10	Unmodified	_KRELKGLLSC_					0	0	0			REV__ENST00000526004.1_1_14:25101006-25102204:-|nuORF	REV__ENST00000526004.1_1_14:25101006-25102204:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.8367919921875	2	573.836808	1145.65906	0.17701	0.00010157	-0.39254	-0.00022526	-0.21554	-0.00012368	573.8365639387629	30.857	0.66029	30.857	30.648	31.309	0					56	23	3	0	0	0	0.31867	1	5652	5652		18.146	0.7037	1	916480	+		19679	21957	11114	11115	24817	24817					0.09206022933699387
KRENILKF	8	Unmodified	_KRENILKF_					0	0	0			REV__ENSG00000162849|ENST00000407071|KIF26B	REV__ENSG00000162849|ENST00000407071|KIF26B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3206176757812	2	524.319109	1046.62366	0.46551	0.00024407	0.7619	0.00039948	1.2274	0.00064356	524.3195652332824	43.615	0.87275	43.615	43.333	44.206	0					92	31	5	0	0	0	0.42371	1	9671	9671		14.838	2.6635	1	3705700	+		19680	17015	11115	11116	24818	24818					0.10221728468172842
KRERDKPKAK	10	Unmodified	_KRERDKPKAK_					0	0	0		ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-2|RBBP6	ENSG00000122257|ENST00000319715|RBBP6	ENSG00000122257|ENST00000319715|RBBP6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	628.38232421875	2	628.383303	1254.75205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.84	1	111.82	111.32	112.32	-0.015625								0	0	0	0.38166	1	29094	29094		1.4819	0	1				19681	3036	11116	11117	24819	24819					0.13486663711250912
KRERQKIQK	9	Unmodified	_KRERQKIQK_					0	0	0			REV__nc|ENSG00000188394|Q9Y3P9-3|RABGAP1	REV__nc|ENSG00000188394|Q9Y3P9-3|RABGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.3784790039062	2	607.37802	1212.74149	0.53718	0.00032627	-0.070042	-4.2542E-05	0.46714	0.00028373	607.3776123343443	89.21	0.80079	89.21	88.844	89.645	0					117	41	4	0	0	0	0.33276	1	23545	23545		3.9444	0	1	1049300	+		19682	13433	11117	11118	24820	24820					0.14362681056832116
KRERQKIQK	9	Unmodified	_KRERQKIQK_					0	0	0			REV__nc|ENSG00000188394|Q9Y3P9-3|RABGAP1	REV__nc|ENSG00000188394|Q9Y3P9-3|RABGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.3773803710938	2	607.37802	1212.74149	0.52891	0.00032125	0.30418	0.00018475	0.83309	0.000506	607.3776793331327	89.125	0.81831	89.216	88.83	89.648	0.090569					112	43	3	0	0	0	0.33276	2	23499	23499;23629		3.9444	0	1	714180	+		19683	13433	11117	11118	24821;24822	24821					0.14362681056832116
KREVNDRCIGV	11	Unmodified	_KREVNDRCIGV_					0	0	0			REV__ENST00000377662.6_1_6:26431111-26431840:+|nuORF	REV__ENST00000377662.6_1_6:26431111-26431840:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.866943359375	2	644.843153	1287.67175	0.42718	0.00027546	0.17721	0.00011427	0.60439	0.00038973	644.8434971902236	70.877	0.2449	70.938	70.8	71.044	0.060783					10	8	2	0	0	0	0.33073	1	17949	17949		7.1017	1.3699	1	173900	+		19684	20506	11118	11119	24823	24823					0.03942434325904287
KREVVVFAS	9	Unmodified	_KREVVVFAS_					0	0	0			REV__ENST00000561023.1_1_14:103803039-103803276:+|nuORF	REV__ENST00000561023.1_1_14:103803039-103803276:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8195190429688	2	517.803291	1033.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.068	1	83.141	82.641	83.641	0.073097								0	0	0	0.24066	1	21707	21707		9.3831	1.473	1		+		19685	22301	11119	11120	24824	24824					0.07657735714224145
KRFAAVIMRIR	11	Unmodified	_KRFAAVIMRIR_					0	0	0		nc|ENSG00000112592|P20226-2|TBP;ENSG00000112592|ENST00000392092|TBP;ENSG00000182521|ENST00000247219|TBPL2	nc|ENSG00000112592|P20226-2|TBP	nc|ENSG00000112592|P20226-2|TBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2835388183594	3	454.283453	1359.82853	0.18003	8.1784E-05	0.44725	0.00020318	0.62728	0.00028496	454.2834930610734	90.577	0.6935	90.577	90.319	91.013	0					129	53	3	0	0	0	0.48212	1	24090	24090		0.45452	0.45452	1	606110			19686	2444	11120	11121	24825	24825					0.16300764006882673
KRFALAEGP	9	Unmodified	_KRFALAEGP_					0	0	0			REV__ENST00000463995.5_1_3:49713127-49713790:+|nuORF	REV__ENST00000463995.5_1_3:49713127-49713790:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.772216796875	2	494.782359	987.550165	0.05083	2.515E-05	-1.8311	-0.00090602	-1.7803	-0.00088087	494.78019747213375	14.835	0.30967	14.77	14.646	14.955	-0.064413					30	10	4	0	0	0	0.27532	2	838	838;857		12.532	3.9383	1	98085	+		19687	21259	11121	11122	24826;24827	24826					0.0558918002569726
KRFFLKWIRI	10	Unmodified	_KRFFLKWIRI_					0	0	0			REV__ENST00000466390.5_1_1:35545015-35561430:+|nuORF	REV__ENST00000466390.5_1_1:35545015-35561430:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.6310729980469	3	469.630958	1405.87105	0.017823	8.3703E-06	0.22532	0.00010582	0.24314	0.00011419	469.6310518602455	95.241	0.63087	95.324	95.064	95.695	0.082779					143	58	3	0	0	0	0.41512	2	25430	25430;25480		0.69767	0.53834	1	365430	+		19688	21286	11122	11123	24828;24829	24828					0.18434482406769348
KRFFLKWIRI	10	Unmodified	_KRFFLKWIRI_					0	0	0			REV__ENST00000466390.5_1_1:35545015-35561430:+|nuORF	REV__ENST00000466390.5_1_1:35545015-35561430:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	469.630958	1405.87105	-0.15359	-7.2131E-05	0.47711	0.00022406	0.32352	0.00015193	469.6311347525813	95.308	0.52148	95.308	95.111	95.633	0	-0.0012531	0.00037197	NaN	0.69767	73	50	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123650	+		19689	21286	11122	11123							0.18434482406769348
KRFFLKWIRI	10	Unmodified	_KRFFLKWIRI_					0	0	0			REV__ENST00000466390.5_1_1:35545015-35561430:+|nuORF	REV__ENST00000466390.5_1_1:35545015-35561430:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	469.630958	1405.87105	0.017823	8.3703E-06	0.22532	0.00010582	0.24314	0.00011419	469.6310518602455	95.241	0.63087	95.324	95.064	95.695	0.082779	0.013969	1.7221E-05	NaN	0.69767	143	58	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365430	+		19690	21286	11122	11123							0.18434482406769348
KRFFLKWIRI	10	Unmodified	_KRFFLKWIRI_					0	0	0			REV__ENST00000466390.5_1_1:35545015-35561430:+|nuORF	REV__ENST00000466390.5_1_1:35545015-35561430:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	469.630958	1405.87105	0.28372	0.00013324	0.058344	2.74E-05	0.34207	0.00016064	469.6309478848441	95.299	0.74307	95.297	95.027	95.77	-0.0020142	-0.012716	-0.00021803	NaN	0.69767	151	72	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338160	+		19691	21286	11122	11123							0.18434482406769348
KRFFTTKKR	9	Unmodified	_KRFFTTKKR_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3704223632812	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.156	1	86.24	85.74	86.74	0.084251								0	0	0	0.24715	1	22655	22655		7.2892	0	1		+		19692	13754	11123	11124	24830	24830					0.13292484033490837
KRFWRSWRRVY	11	Unmodified	_KRFWRSWRRVY_					0	0	0		ENST00000496222.1_1_3:160156960-160167504:-|nuORF;ENST00000483754.1_1_3:160156960-160167537:-|nuORF	ENST00000496222.1_1_3:160156960-160167504:-|nuORF	ENST00000496222.1_1_3:160156960-160167504:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8092041015625	3	547.307537	1638.90078	0.37065	0.00020286	-1.0241	-0.00056047	-0.6534	-0.00035761	547.3067004105143	34.164	0.55579	34.231	33.939	34.495	0.0667					36	19	3	0	0	0	0.33352	1	6660	6660		0.073264	0.073264	1	214660			19693	11066	11124	11125	24831	24831					0.1068881440480709
KRGAAGLIGPS	11	Unmodified	_KRGAAGLIGPS_					0	0	0			REV__ENST00000328827.8_1_12:80084054-80084702:-|nuORF	REV__ENST00000328827.8_1_12:80084054-80084702:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.788330078125	2	513.806365	1025.59818	0.27654	0.00014209	-0.79347	-0.00040769	-0.51693	-0.0002656	513.8059798503208	16.987	0.56676	16.927	16.731	17.298	-0.060429					26	20	2	0	0	0	0.47649	1	1605	1605		1.1933	0.50296	1	79876	+		19694	20019	11125	11126	24832	24832					0.08640253945759468
KRGDVIYIL	9	Unmodified	_KRGDVIYIL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8269653320312	2	538.826766	1075.63898	0.72469	0.00039048	-0.30787	-0.00016589	0.41681	0.00022459	538.8265780919231	48.121	1.3935	48.121	47.849	49.243	0					91	49	2	0	0	0	0.0059482	2	11003	10958;11003		85.642	33.373	1	11576000			19695	323	11126	11127	24833;24834	24834					0.1041859526535518
KRGDVIYIL	9	Unmodified	_KRGDVIYIL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8270263671875	2	538.826766	1075.63898	0.81558	0.00043946	-0.32479	-0.00017501	0.4908	0.00026445	538.8265776722762	48.041	1.2191	48.088	47.772	48.991	0.047523					83	44	2	0	0	0	0.0059482	2	10953	10953;11000		85.642	33.373	1	12096000			19696	323	11126	11127	24835;24836	24835					0.1041859526535518
KRGDVIYIL	9	Unmodified	_KRGDVIYIL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8267822265625	2	538.826766	1075.63898	0.7458	0.00040186	-0.45243	-0.00024378	0.29337	0.00015807	538.8265887780245	47.974	1.2022	48.018	47.637	48.839	0.04332					168	44	5	0	0	0	0.0059482	2	10942	10942;10991		85.642	33.373	1	13620000			19697	323	11126	11127	24837;24838	24837					0.1041859526535518
KRGKPPRRE	9	Unmodified	_KRGKPPRRE_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.8134765625	2	562.343981	1122.67341	0.54015	0.00030375	-1.032	-0.00058034	-0.49184	-0.00027659	562.3432794258002	85.34	0.90929	85.421	84.975	85.884	0.080879					59	34	2	0	0	0	0.26168	1	22364	22364		1.8442	1.8442	1	155260			19698	4967	11127	11128	24839	24839					0.11697856196838075
KRGMMLIM	8	Unmodified	_KRGMMLIM_					0	0	0			REV__ENST00000551065.5_1_12:94072789-94287828:+|nuORF	REV__ENST00000551065.5_1_12:94072789-94287828:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.75677490234375	2	490.266119	978.517684	-0.007387	-3.6216E-06	-3.5311	-0.0017312	-3.5385	-0.0017348	490.2644204235611	14.389	0.2203	14.323	14.206	14.427	-0.066068					9	7	2	0	0	0	0.34337	1	682	682		5.2307	2.3415	1	22481	+		19699	22205	11128	11129	24840	24840					0.027566100351918976
KRGPGRAT	8	Unmodified	_KRGPGRAT_					0	0	0			REV__ENSG00000143479|ENST00000367109|DYRK3	REV__ENSG00000143479|ENST00000367109|DYRK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7512512207031	2	421.751393	841.488233	-0.058867	-2.4827E-05	-0.15521	-6.5459E-05	-0.21408	-9.0287E-05	421.75126699563543	79.886	0.87482	79.886	79.638	80.513	0					71	32	3	0	0	0	0.34337	1	20775	20775		5.2307	0.47466	1	764490	+		19700	16182	11129	11130	24841	24841					0.06114873397223164
KRGRAPLV	8	Unmodified	_KRGRAPLV_					0	0	0			REV__ENSG00000125901|ENST00000380325|MRPS26	REV__ENSG00000125901|ENST00000380325|MRPS26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.2042236328125	2	448.793061	895.571569	0.072256	3.2428E-05	-0.23989	-0.00010766	-0.16763	-7.5231E-05	448.7926434201307	19.357	0.34733	19.241	19.086	19.433	-0.11592					15	11	2	0	0	0	0.34434	1	2233	2233		0.79363	0	1	23120	+		19701	15290	11130	11131	24842	24842					0.11960609845073122
KRGRAPLV	8	Unmodified	_KRGRAPLV_					0	0	0			REV__ENSG00000125901|ENST00000380325|MRPS26	REV__ENSG00000125901|ENST00000380325|MRPS26	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	448.793061	895.571569	0.13206	5.9269E-05	-0.19111	-8.5768E-05	-0.059046	-2.6499E-05	448.79297062510335	19.232	0.37022	19.176	19.114	19.485	-0.055693	-0.032321	2.0557E-05	NaN	0.79363	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22623	+		19702	15290	11130	11131							0.11960609845073122
KRHLPGQP	8	Unmodified	_KRHLPGQP_					0	0	0			REV__nc|ENSG00000116678|P48357-3|LEPR	REV__nc|ENSG00000116678|P48357-3|LEPR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.77398681640625	2	466.774868	931.535184	-0.32686	-0.00015257	-1.2035	-0.00056175	-1.5303	-0.00071432	466.77417310439813	13.173	0.33757	13.173	13.09	13.427	0					18	11	2	0	0	0	0.46022	1	373	373		2.3027	0.4585	1	32175	+		19703	22964	11131	11132	24843	24843					0.06667732948369576
KRHYKLLKQ	9	Unmodified	_KRHYKLLKQ_					0	0	0		ENST00000332707.9_1_12:64815105-64815165:+|nuORF	ENST00000332707.9_1_12:64815105-64815165:+|nuORF	ENST00000332707.9_1_12:64815105-64815165:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.377685546875	2	607.380032	1212.74551	0.41034	0.00024923	-2.7619	-0.0016775	-2.3515	-0.0014283	607.3777190056928	89.1	2.029	89.099	87.936	89.965	-0.00080872					189	114	3	0	0	0	0.31038	1	23529	23529		7.2892	0.18751	1	693120			19704	9452	11132	11133	24844	24844					0.14764770550550566
KRHYKLLKQ	9	Unmodified	_KRHYKLLKQ_					0	0	0		ENST00000332707.9_1_12:64815105-64815165:+|nuORF	ENST00000332707.9_1_12:64815105-64815165:+|nuORF	ENST00000332707.9_1_12:64815105-64815165:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	607.380032	1212.74551	0.52891	0.00032125	-3.0074	-0.0018266	-2.4785	-0.0015054	607.3776793331327	89.125	0.81831	89.216	88.83	89.648	0.090569	0.040798	0.00018404	NaN	7.2892	112	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	714180			19705	9452	11132	11133							0.14764770550550566
KRIKNPNPILK	11	Unmodified	_KRIKNPNPILK_					0	0	0			REV__ENSG00000152464|ENST00000378197|RPP38	REV__ENSG00000152464|ENST00000378197|RPP38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.7499694824219	3	440.95399	1319.84014	0.1987	8.7617E-05	-4.0247	-0.0017747	-3.826	-0.0016871	440.9516133629671	62.687	0.1074	62.687	62.611	62.718	0					5	3	2	0	0	0	0.3333	1	15467	15467		1.3296	0.11481	1	34060	+		19706	16579	11133	11134	24845	24845					0.19301284301855048
KRIWAMKK	8	Unmodified	_KRIWAMKK_					0	0	0			REV__ENST00000576084.5_1_17:53029422-53031174:-|nuORF	REV__ENST00000576084.5_1_17:53029422-53031174:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3436279296875	2	530.826047	1059.63754	0.14951	7.9362E-05	2.2431	0.0011907	2.3926	0.0012701	530.8270611117239	12.705	0.20132	12.705	12.582	12.783	0					15	6	3	0	0	0	0.44389	1	206	206		7.9102	2.6133	1	94734	+		19707	22450	11134	11135	24846	24846					0.1101068269560983
KRKAKVCFRF	10	Unmodified	_KRKAKVCFRF_					0	0	0			REV__ENSG00000121377|ENST00000240687|TAS2R7	REV__ENSG00000121377|ENST00000240687|TAS2R7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8818969726562	2	641.881884	1281.74922	0.33589	0.0002156	1.0458	0.00067127	1.3817	0.00088687	641.882430388857	96.394	0.58043	96.472	96.248	96.828	0.077415					94	58	2	0	0	0	0.40992	1	25720	25720		1.6526	0.45928	1	179320	+		19708	15119	11135	11136	24847	24847					0.11961117052760528
KRKHERRHIRS	11	Unmodified	_KRKHERRHIRS_					0	0	0		ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.634521484375	3	501.634424	1501.88144	0.15108	7.5789E-05	-0.13551	-6.7975E-05	0.015576	7.8133E-06	501.63441285938063	94.806	3.9031	94.806	94.003	97.906	0					1129	375	5	0	0	0	0.4709	1	25488	25488		1.9275	0.59786	1	2796100			19709	3529	11136	11137	24848	24848					0.15057858113937073
KRKHRKIPF	9	Unmodified	_KRKHRKIPF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.1903991699219	3	403.927886	1208.76183	-0.34704	-0.00014018	0.23979	9.6856E-05	-0.10725	-4.3323E-05	403.9273377162873	30.598	0.336	30.625	30.448	30.784	0.027157					18	11	2	0	0	0	0.26127	1	5580	5580		2.7352	1.5419	1	63856			19710	1775	11137	11138	24849	24849					0.16579896507300873
KRKKDPRP	8	Unmodified	_KRKKDPRP_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.231689453125	2	512.82235	1023.63015	-0.10421	-5.3441E-05	-0.063701	-3.2667E-05	-0.16791	-8.6108E-05	512.8221476029929	14.053	0.20178	13.948	13.79	13.991	-0.10466					10	6	2	0	0	0	0.34437	1	618	618		0.69038	0	1	23467	+		19711	13863	11138	11139	24850	24850					0.11927666419558136
KRKKDPRP	8	Unmodified	_KRKKDPRP_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	512.82235	1023.63015	-0.12971	-6.6518E-05	0.1861	9.5438E-05	0.056394	2.892E-05	512.8222633999997	14.035	0.23901	13.969	13.831	14.07	-0.066068	0.010494	9.7999E-05	NaN	0.69038	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23717	+		19712	13863	11138	11139							0.11927666419558136
KRKKRRWYLW	10	Unmodified	_KRKKRRWYLW_					0	0	0			REV__nc|ENSG00000185008|Q9HCK4-2|ROBO2	REV__nc|ENSG00000185008|Q9HCK4-2|ROBO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7787780761719	3	507.308878	1518.90481	0.28941	0.00014682	1.3802	0.00070019	1.6696	0.00084701	507.6436687710157	91.868	0.088776	91.868	91.809	91.898	0					6	4	2	0	0	0	0.32174	1	24395	24395		0.15932	0.064481	1	60859	+		19713	18349	11139	11140	24851	24851					0.1661090389857236
KRKKRRWYLW	10	Unmodified	_KRKKRRWYLW_					0	0	0			REV__nc|ENSG00000185008|Q9HCK4-2|ROBO2	REV__nc|ENSG00000185008|Q9HCK4-2|ROBO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7787780761719	3	507.308878	1518.90481	0.28132	0.00014272	0.20672	0.00010487	0.48804	0.00024759	507.3084931493318	92.067	0.133	92.067	91.94	92.073	0					12	6	2	0	0	0	0.32174	1	24437	24437		0.15932	0.064481	1	112070	+		19714	18349	11139	11140	24852	24852					0.1661090389857236
KRKKRRWYLW	10	Unmodified	_KRKKRRWYLW_					0	0	0			REV__nc|ENSG00000185008|Q9HCK4-2|ROBO2	REV__nc|ENSG00000185008|Q9HCK4-2|ROBO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7787170410156	3	507.308878	1518.90481	0.29468	0.00014949	1.3707	0.00069539	1.6654	0.00084488	507.30933465435794	91.683	0.072014	91.774	91.72	91.792	0.090675					6	4	2	0	0	0	0.32174	1	24339	24339		0.15932	0.064481	1	44216	+		19715	18349	11139	11140	24853	24853					0.1661090389857236
KRKKRRWYLW	10	Unmodified	_KRKKRRWYLW_					0	0	0			REV__nc|ENSG00000185008|Q9HCK4-2|ROBO2	REV__nc|ENSG00000185008|Q9HCK4-2|ROBO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7788391113281	3	507.308878	1518.90481	0.4649	0.00023585	1.3609	0.0006904	1.8258	0.00092625	507.30923880102864	91.985	0.17466	91.986	91.865	92.04	0.00046539					14	8	3	0	0	0	0.32174	1	24430	24430		0.15932	0.064481	1	99883	+		19716	18349	11139	11140	24854	24854					0.1661090389857236
KRKQIFGQNF	10	Unmodified	_KRKQIFGQNF_					0	0	0		nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000157087|ENST00000360273|ATP2B2;ENST00000480680.2_1_3:10429922-10491260:-|nuORF	nc|ENSG00000157087|Q01814-4|ATP2B2	nc|ENSG00000157087|Q01814-4|ATP2B2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3591918945312	2	633.359296	1264.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.875	1	18.875	18.375	19.375	0								0	0	0	0.38065	1	2064	2064		0.40072	0.40072	1				19717	5278	11140	11141	24855	24855					0.08227589791249557
KRKRKRVSEGN	11	Unmodified	_KRKRKRVSEGN_					0	0	0		nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1;ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1;ENST00000486086.1_1_7:74015315-74016757:+|nuORF	nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.27642822265625	3	453.276014	1356.80621	-0.19311	-8.7533E-05	1.0504	0.00047612	0.85729	0.00038859	453.2765024741483	12.414	0.22298	12.414	12.332	12.555	0					15	6	3	0	0	0	0.48279	1	138	138		0.36667	0.037403	1	80582			19718	12560	11141	11142	24856	24856					0.1420825586283172
KRKRQSKMT	9	Unmodified	_KRKRQSKMT_					0	0	0			REV__ENST00000335681.9_1_2:101521220-101549455:+|nuORF	REV__ENST00000335681.9_1_2:101521220-101549455:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.2847290039062	2	581.845499	1161.67644	-0.014806	-8.6148E-06	-2.3791	-0.0013842	-2.3939	-0.0013929	581.8443182176072	14.619	0.30551	14.619	14.423	14.729	0					15	10	2	0	0	0	0.26204	1	806	806		1.4819	0.41044	1	31784	+		19719	20066	11142	11143	24857	24857					0.10207363259337399
KRLDKKRSV	9	Unmodified	_KRLDKKRSV_					0	0	0		ENST00000497465.1_1_15:44065316-44067617:-|nuORF;nc|ENSG00000128886|Q9HB65-2|ELL3;ENST00000417761.2_1_15:44065316-44087594:-|nuORF;ENSG00000128886|ENST00000319359|ELL3;ENST00000467869.5_1_15:44065316-44068571:-|nuORF	ENST00000497465.1_1_15:44065316-44067617:-|nuORF	ENST00000497465.1_1_15:44065316-44067617:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.3615112304688	2	565.361839	1128.70913	0.0022891	1.2941E-06	-0.19552	-0.00011054	-0.19323	-0.00010925	565.361762636365	13.749	0.25121	13.645	13.487	13.738	-0.10466					17	8	3	0	0	0	0.33508	1	535	535		3.5965	1.5367	1	64510			19720	3397	11143	11144	24858	24858					0.14991893653836996
KRLKEYRVF	9	Unmodified	_KRLKEYRVF_					0	0	0		ENST00000424459.7_2_5:56471743-56471803:+|nuORF	ENST00000424459.7_2_5:56471743-56471803:+|nuORF	ENST00000424459.7_2_5:56471743-56471803:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.869140625	2	619.87204	1237.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.81	1	100.81	100.31	101.31	-0.0054703								0	0	0	0.2575	1	26947	26947		3.9444	2.1002	1				19721	10397	11144	11145	24859	24859					0.12017064313636183
KRLKEYRVF	9	Unmodified	_KRLKEYRVF_					0	0	0		ENST00000424459.7_2_5:56471743-56471803:+|nuORF	ENST00000424459.7_2_5:56471743-56471803:+|nuORF	ENST00000424459.7_2_5:56471743-56471803:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8689575195312	2	619.87204	1237.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.06	1	101.05	100.55	101.55	-0.0054703								0	0	0	0.2575	1	26996	26996		3.9444	0.3479	1				19722	10397	11144	11145	24860	24860					0.12017064313636183
KRLNFITEY	9	Unmodified	_KRLNFITEY_					0	0	0		ENST00000483414.1_1_7:73511493-73523492:+|nuORF;LIMK1|p.N462Kfs*57|1|0.15|ENSG00000106683|chr7:74111974-74111980|CTCCCAC/-|frameshift_variant;nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1	ENST00000483414.1_1_7:73511493-73523492:+|nuORF	ENST00000483414.1_1_7:73511493-73523492:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.8164672851562	2	592.327131	1182.63971	0.40579	0.00024036	-0.18126	-0.00010737	0.22453	0.00013299	592.326998937536	43.349	0.58686	43.349	43.18	43.767	0					31	21	3	0	0	0	0.19747	1	9545	9545		24.021	10.978	1	361410			19723	2095	11145	11146	24861	24861					0.05569389914421663
KRLNFITEY	9	Unmodified	_KRLNFITEY_					0	0	0		ENST00000483414.1_1_7:73511493-73523492:+|nuORF;LIMK1|p.N462Kfs*57|1|0.15|ENSG00000106683|chr7:74111974-74111980|CTCCCAC/-|frameshift_variant;nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1	ENST00000483414.1_1_7:73511493-73523492:+|nuORF	ENST00000483414.1_1_7:73511493-73523492:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.806884765625	2	592.327131	1182.63971	0.17955	0.00010635	0.15514	9.1894E-05	0.33469	0.00019825	592.8285889174464	42.894	0.42558	42.985	42.772	43.198	0.091362					26	15	2	0	0	0	0.24289	1	9350	9350		18.146	11.423	1	315170			19724	2095	11145	11146	24862	24862					0.05569389914421663
KRLNFITEY	9	Unmodified	_KRLNFITEY_					0	0	0		ENST00000483414.1_1_7:73511493-73523492:+|nuORF;LIMK1|p.N462Kfs*57|1|0.15|ENSG00000106683|chr7:74111974-74111980|CTCCCAC/-|frameshift_variant;nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1	ENST00000483414.1_1_7:73511493-73523492:+|nuORF	ENST00000483414.1_1_7:73511493-73523492:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	592.327131	1182.63971	0.45216	0.00026783	0.062514	3.7029E-05	0.51467	0.00030486	592.3272154170844	42.944	0.43744	43.029	42.861	43.299	0.085201	-0.092044	3.1356E-05	NaN	24.021	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324880			19725	2095	11145	11146							0.05569389914421663
KRLNMLYV	8	Unmodified	_KRLNMLYV_					0	0	0			REV__nc|ENSG00000285130|Q16595-2|FXN	REV__nc|ENSG00000285130|Q16595-2|FXN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.23193359375	2	518.802237	1035.58992	0.55588	0.00028839	0.88527	0.00045928	1.4411	0.00074767	519.3033100028732	29.745	0.55871	29.745	29.441	29.999	0					54	19	4	0	0	0	0.34092	1	5307	5307		13.508	0	1	286610	+		19726	17203	11146	11147	24863	24863					0.07354983704772167
KRLNMLYV	8	Unmodified	_KRLNMLYV_					0	0	0			REV__nc|ENSG00000285130|Q16595-2|FXN	REV__nc|ENSG00000285130|Q16595-2|FXN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2319946289062	2	518.802237	1035.58992	0.3808	0.00019756	1.1562	0.00059983	1.537	0.00079739	519.3031961265358	29.688	0.61519	29.7	29.417	30.032	0.012264					55	20	4	0	0	0	0.3366	1	5327	5327		18.135	2.2878	1	322930	+		19727	17203	11146	11147	24864	24864					0.07354983704772167
KRLREANTK	9	Unmodified	_KRLREANTK_					0	0	0		L1MC1_dup4818|chr5:157018062-157020331:+|1.2048631609900489|0.0442921674053822|4.77|515.0|35|2|sense	L1MC1_dup4818|chr5:157018062-157020331:+|1.2048631609900489|0.0442921674053822|4.77|515.0|35|2|sense	L1MC1_dup4818|chr5:157018062-157020331:+|1.2048631609900489|0.0442921674053822|4.77|515.0|35|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8013305664062	2	558.335821	1114.65709	0.21179	0.00011825	-0.088932	-4.9654E-05	0.12286	6.8597E-05	558.3357030150538	17.909	0.30626	17.909	17.771	18.077	0					14	9	2	0	0	0	0.26204	1	1739	1739		1.4819	0	1	33973			19728	12455	11147	11148	24865	24865					0.10434730240058343
KRMERSLHY	9	Unmodified	_KRMERSLHY_					0	0	0			REV__nc|ENSG00000107581|Q14152-2|EIF3A	REV__nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.57904052734375	3	407.216997	1218.62916	-0.17268	-7.0319E-05	-1.8496	-0.00075318	-2.0222	-0.00082349	407.55055435747346	28.52	0.53391	28.516	28.333	28.867	-0.0042572					26	18	2	0	0	0	0.25431	1	4980	4980		9.544	4.4965	1	141120	+		19729	14557	11148	11149	24866	24866					0.028590839883690933
KRMSLLQSI	9	Unmodified	_KRMSLLQSI_					0	0	0		ENST00000342085.8_1_16:2651281-2651560:+|nuORF	ENST00000342085.8_1_16:2651281-2651560:+|nuORF	ENST00000342085.8_1_16:2651281-2651560:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2599487304688	2	538.318251	1074.62195	0.61524	0.0003312	0.044987	2.4218E-05	0.66023	0.00035541	538.318048151846	65.572	0.4979	65.572	65.373	65.871	0					29	17	2	0	0	0	0.16284	1	16323	16323		30.637	10.183	1	164740			19730	9528	11149	11150	24867	24867					0.08762351387940726
KRMSLLQSI	9	Unmodified	_KRMSLLQSI_					0	0	0		ENST00000342085.8_1_16:2651281-2651560:+|nuORF	ENST00000342085.8_1_16:2651281-2651560:+|nuORF	ENST00000342085.8_1_16:2651281-2651560:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.260009765625	2	538.318251	1074.62195	0.21936	0.00011809	0.55774	0.00030024	0.7771	0.00041833	538.3184488611515	65.508	0.51312	65.597	65.352	65.865	0.088882					29	18	3	0	0	0	0.16284	1	16292	16292		37.974	15.238	1	144510			19731	9528	11149	11150	24868	24868					0.08762351387940726
KRNCRNRK	8	Unmodified	_KRNCRNRK_					0	0	0			REV__nc|ENSG00000232656|Q9NZ38|IDI2-AS1	REV__nc|ENSG00000232656|Q9NZ38|IDI2-AS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2985229492188	2	537.806708	1073.59886	0.20478	0.00011013	-0.086658	-4.6605E-05	0.11812	6.3527E-05	537.8064069755226	17.747	0.34447	17.629	17.467	17.812	-0.11739					21	11	3	0	0	0	0.42758	1	1709	1709		13.508	0.46542	1	85907	+		19732	23204	11150	11151	24869	24869					0.065007701138029
KRNFEGSQ	8	Unmodified	_KRNFEGSQ_					0	0	0			REV__ENST00000540636.5_3_9:136028823-136028979:-|nuORF	REV__ENST00000540636.5_3_9:136028823-136028979:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2438659667969	2	483.243598	964.472643	-0.087546	-4.2306E-05	1.12	0.00054126	1.0325	0.00049895	483.2440112382355	13.797	0.34186	13.731	13.575	13.917	-0.066068					26	11	3	0	0	0	0.34272	1	538	538		7.9102	0	1	115160	+		19733	22116	11151	11152	24870	24870					-0.011014579104653421
KRNFEGSQ	8	Unmodified	_KRNFEGSQ_					0	0	0			REV__ENST00000540636.5_3_9:136028823-136028979:-|nuORF	REV__ENST00000540636.5_3_9:136028823-136028979:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	483.243598	964.472643	-0.13942	-6.7373E-05	0.88219	0.00042631	0.74277	0.00035894	483.24387514773036	13.776	0.36483	13.671	13.538	13.903	-0.10466	-0.026903	-9.8938E-05	NaN	7.9102	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118550	+		19734	22116	11151	11152							-0.011014579104653421
KRNHRQIK	8	Unmodified	_KRNHRQIK_					0	0	0			REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.9854736328125	2	540.330873	1078.64719	0.30639	0.00016555	-0.062683	-3.3869E-05	0.24371	0.00013168	540.8318831042174	97.543	0.34498	97.604	97.483	97.827	0.061516					70	40	3	0	0	0	0.344	1	26097	26097		2.5775	0	1	53656	+		19735	15321	11152	11153	24871	24871					0.11101587025336812
KRNHRQIK	8	Unmodified	_KRNHRQIK_					0	0	0			REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3294067382812	2	540.330873	1078.64719	0.66071	0.000357	-1.0679	-0.00057702	-0.40719	-0.00022002	540.32972446075	87.346	0.26807	87.34	87.171	87.439	-0.0056229					25	12	3	0	0	0	0.45169	1	22963	22963		5.2307	0.90143	1	134680	+		19736	15321	11152	11153	24872	24872					0.11101587025336812
KRNHRQIK	8	Unmodified	_KRNHRQIK_					0	0	0			REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.9852905273438	2	540.330873	1078.64719	0.51219	0.00027675	-1.0049	-0.00054299	-0.49272	-0.00026623	540.8317142931102	98.374	0.28629	98.367	98.28	98.566	-0.0068283					34	31	2	0	0	0	0.34337	1	26351	26351		5.2307	0.90143	1	175590	+		19737	15321	11152	11153	24873	24873					0.11101587025336812
KRNHRQIK	8	Unmodified	_KRNHRQIK_					0	0	0			REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	540.330873	1078.64719	0.53718	0.00029026	-0.97749	-0.00052817	-0.4403	-0.00023791	540.8318240188607	97.528	0.84097	97.521	97.12	97.961	-0.0068207	-0.041611	-0.00010759	NaN	2.5775	119	88	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180210	+		19738	15321	11152	11153							0.11101587025336812
KRNHSRSKPPR	11	Unmodified	_KRNHSRSKPPR_					0	0	0			REV__nc|ENSG00000106948|Q7Z591-3|AKNA	REV__nc|ENSG00000106948|Q7Z591-3|AKNA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2426452636719	3	454.932359	1361.77525	-0.012161	-5.5323E-06	2.2749	0.0010349	2.2628	0.0010294	454.93320158327134	28.42	0.38006	28.416	28.278	28.658	-0.0042572					24	13	3	0	0	0	0.33189	1	4999	4999		5.8681	3.2369	1	164830	+		19739	14539	11153	11154	24874	24874					0.10883102548586976
KRNKCFEMSS	10	Unmodified	_KRNKCFEMSS_					0	0	0		nc|ENSG00000149782|Q01970-2|PLCB3;ENSG00000149782|ENST00000279230|PLCB3	nc|ENSG00000149782|Q01970-2|PLCB3	nc|ENSG00000149782|Q01970-2|PLCB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.87542724609375	3	410.530364	1228.56926	-0.20629	-8.4687E-05	2.7995	0.0011493	2.5932	0.0010646	410.53106922562364	26.077	0.26077	26.077	25.981	26.242	0					10	8	2	0	0	0	0.3213	1	4232	4232		1.9064	0	1	29685			19740	4892	11154	11155	24875	24875					-0.03587974737206423
KRNKVYPL	8	Unmodified	_KRNKVYPL_					0	0	0		ENST00000477448.1_1_6:107811820-107879187:+|nuORF	ENST00000477448.1_1_6:107811820-107879187:+|nuORF	ENST00000477448.1_1_6:107811820-107879187:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3002014160156	2	509.313826	1016.6131	0.010894	5.5484E-06	0.38723	0.00019722	0.39812	0.00020277	509.3139376481833	14.702	0.45512	14.597	14.368	14.823	-0.10466					27	15	2	0	0	0	0.344	1	748	748		2.5775	2.1191	1	51406			19741	10957	11155	11156	24876	24876					0.10545745813737994
KRNPKSYIG	9	Unmodified	_KRNPKSYIG_					0	0	0			REV__nc|ENSG00000141425|Q96P16-3|RPRD1A	REV__nc|ENSG00000141425|Q96P16-3|RPRD1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8065185546875	2	531.806365	1061.59818	0.079377	4.2213E-05	-0.72678	-0.0003865	-0.6474	-0.00034429	531.8063713253447	14.58	0.71799	14.475	14.105	14.823	-0.10466					45	24	5	0	0	0	0.23767	1	779	779		18.146	0	1	157640	+		19742	23014	11156	11157	24877	24877					0.06984253945756791
KRPAAKQLTK	10	Unmodified	_KRPAAKQLTK_					0	0	0		ENSG00000112624|ENST00000314073|BICRAL	ENSG00000112624|ENST00000314073|BICRAL	ENSG00000112624|ENST00000314073|BICRAL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8640747070312	2	570.864215	1139.71388	-0.11434	-6.5274E-05	0.026817	1.5309E-05	-0.087525	-4.9965E-05	570.8642321171159	12.087	0.22643	12.087	12.018	12.245	0					24	10	3	0	0	0	0.34053	1	21	21		14.405	0	1	119030			19743	2446	11157	11158	24878	24878					0.14960777796591174
KRPAAKQLTK	10	Unmodified	_KRPAAKQLTK_					0	0	0		ENSG00000112624|ENST00000314073|BICRAL	ENSG00000112624|ENST00000314073|BICRAL	ENSG00000112624|ENST00000314073|BICRAL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8640747070312	2	570.864215	1139.71388	0.092266	5.2671E-05	0.03891	2.2212E-05	0.13118	7.4884E-05	570.8641991364203	12.089	0.23599	11.993	11.912	12.148	-0.096607					23	10	3	0	0	0	0.37751	1	26	26		7.609	0.50723	1	109540			19744	2446	11157	11158	24879	24879					0.14960777796591174
KRPAPIQTLS	10	Unmodified	_KRPAPIQTLS_					0	0	0			REV__ENST00000547221.1_3_6:31106167-31107440:+|nuORF	REV__ENST00000547221.1_3_6:31106167-31107440:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7809448242188	2	555.835123	1109.65569	0.010142	5.6373E-06	0.12032	6.6876E-05	0.13046	7.2513E-05	555.835274956706	30.473	0.39011	30.501	30.394	30.784	0.027157					20	13	2	0	0	0	0.31642	1	5563	5563		10.8	2.0541	1	94481	+		19745	22177	11158	11159	24880	24880					0.10525096151332036
KRPKQSLY	8	Unmodified	_KRPKQSLY_					0	0	0			REV__ENST00000540429.1_1_12:26646977-26648169:-|nuORF	REV__ENST00000540429.1_1_12:26646977-26648169:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2781982421875	2	510.303458	1018.59236	0.19531	9.9669E-05	0.02071	1.0568E-05	0.21602	0.00011024	510.3030759047127	19.442	0.69802	19.326	19.031	19.729	-0.11592					38	23	2	0	0	0	0.34378	1	2287	2287		3.9444	0	1	75431	+		19746	22112	11159	11160	24881	24881					0.08381155434096854
KRPLRPRKERK	11	Unmodified	_KRPLRPRKERK_					0	0	0			REV__ENST00000569957.5_1_16:30012641-30012857:+|nuORF	REV__ENST00000569957.5_1_16:30012641-30012857:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2742919921875	3	488.651304	1462.93208	0.4117	0.00020118	0.72082	0.00035223	1.1325	0.00055341	488.65152446686983	45.409	0.2682	45.474	45.248	45.516	0.065048					10	9	2	0	0	0	0.33349	1	10112	10112		0.32927	0.24592	1	103290	+		19747	17523	11160	11161	24882	24882					0.21913387438871723
KRPPIKKMT	9	Unmodified	_KRPPIKKMT_					0	0	0			REV__nc|ENSG00000041515|Q9Y6X6|MYO16	REV__nc|ENSG00000041515|Q9Y6X6|MYO16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.77734375	2	549.844436	1097.67432	0.54518	0.00029976	-0.33792	-0.0001858	0.20726	0.00011396	549.8442267341983	44.933	0.40946	45.002	44.765	45.175	0.068569					20	14	2	0	0	0	0.25622	1	9995	9995		7.2892	7.2892	1	131180	+		19748	13527	11161	11162	24883	24883					0.1293893452152588
KRPPIKKMT	9	Unmodified	_KRPPIKKMT_					0	0	0			REV__nc|ENSG00000041515|Q9Y6X6|MYO16	REV__nc|ENSG00000041515|Q9Y6X6|MYO16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7772827148438	2	549.844436	1097.67432	0.60356	0.00033186	-0.56078	-0.00030834	0.042772	2.3518E-05	550.3457447804265	44.967	0.45365	45.042	44.78	45.234	0.075047					25	16	2	0	0	0	0.25622	1	9990	9990		7.2892	4.9865	1	174620	+		19749	13527	11161	11162	24884	24884					0.1293893452152588
KRPPIKKMT	9	Unmodified	_KRPPIKKMT_					0	0	0			REV__nc|ENSG00000041515|Q9Y6X6|MYO16	REV__nc|ENSG00000041515|Q9Y6X6|MYO16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	549.844436	1097.67432	0.50706	0.0002788	0.14548	7.9992E-05	0.65254	0.0003588	549.8444718197744	45.072	0.38505	45.072	44.881	45.266	0	0.033311	0.00025323	NaN	7.2892	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151720	+		19750	13527	11161	11162							0.1293893452152588
KRPPLQSL	8	Unmodified	_KRPPLQSL_					0	0	0		nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9;nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7925720214844	2	469.792727	937.5709	0.020894	9.8157E-06	-0.23457	-0.0001102	-0.21367	-0.00010038	469.79253133689286	24.642	0.69502	24.642	24.34	25.035	0					38	23	2	0	0	0	0.14707	1	3787	3787		52.268	19.963	1	158110			19751	3096	11162	11163	24885	24885					0.09961770405368497
KRPPLQSL	8	Unmodified	_KRPPLQSL_					0	0	0		nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9;nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	469.792727	937.5709	0.061843	2.9054E-05	-0.21254	-9.9849E-05	-0.15069	-7.0795E-05	469.7925209734485	24.734	0.56344	24.678	24.46	25.023	-0.055931	0.010557	-1.777E-05	NaN	52.268	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173210			19752	3096	11162	11163							0.09961770405368497
KRPPLQSL	8	Unmodified	_KRPPLQSL_					0	0	0		nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9;nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	469.792727	937.5709	-0.046386	-2.1792E-05	-0.12044	-5.6581E-05	-0.16683	-7.8373E-05	469.79256273453404	24.713	0.72496	24.682	24.456	25.181	-0.03141	0.014849	6.8766E-05	NaN	52.268	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213750			19753	3096	11162	11163							0.09961770405368497
KRPPSPTLQH	10	Unmodified	_KRPPSPTLQH_					0	0	0		ENSG00000196169|ENST00000389916|KIF19	ENSG00000196169|ENST00000389916|KIF19	ENSG00000196169|ENST00000389916|KIF19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3074340820312	2	580.830372	1159.64619	0.40085	0.00023282	2.2129	0.0012853	2.6137	0.0015181	581.3336064835144	21.091	0.72146	21.091	20.709	21.431	0					38	24	2	0	0	0	0.32132	1	2666	2666		1.4819	0	1	37598			19754	7831	11163	11164	24886	24886					0.07275327865818326
KRPSLPKF	8	Unmodified	_KRPSLPKF_					0	0	0			REV__ENST00000329047.12_1_17:75315660-75315828:+|nuORF	REV__ENST00000329047.12_1_17:75315660-75315828:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7921142578125	2	486.803094	971.591636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.943	1	87.94	87.44	88.44	-0.0028381								0	0	0	0.37183	1	23196	23196		4.756	0	1		+		19755	20025	11164	11165	24887	24887					0.10470360785029698
KRPVGGFLL	9	Unmodified	_KRPVGGFLL_					0	0	0		nc|ENSG00000151576|Q9H974-2|QTRT2;nc|ENSG00000151576|Q9H974-3|QTRT2;ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2;ENST00000467703.1_1_3:113789475-113795805:+|nuORF	nc|ENSG00000151576|Q9H974-2|QTRT2	nc|ENSG00000151576|Q9H974-2|QTRT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.81103515625	2	493.810919	985.607286	0.09702	4.791E-05	-0.33421	-0.00016504	-0.23719	-0.00011713	493.8108235609905	42.481	0.81329	42.481	42.221	43.034	0					62	29	3	0	0	0	0.019896	2	9217	9217;9258		64.236	30.134	1	1214900			19756	4969	11165	11166	24888;24889	24888					0.11390647302096113
KRQDEERLS	9	Unmodified	_KRQDEERLS_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8054809570312	2	580.804551	1159.59455	-0.14564	-8.459E-05	1.2923	0.00075056	1.1466	0.00066597	580.805195037093	12.431	0.20961	12.363	12.253	12.462	-0.06806					13	6	3	0	0	0	0.33508	1	131	131		3.5965	0	1	84798	+		19757	15602	11166	11167	24890	24890					0.02113539381252849
KRQEAIFEL	9	Unmodified	_KRQEAIFEL_					0	0	0		nc|ENSG00000163947|Q9NR81-3|ARHGEF3;ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3;ARHGEF3|p.Q132Sfs*11|1|0.04|ENSG00000163947|chr3:56753548-56753549|-/CAGGCGATCTTTGA|frameshift_variant	nc|ENSG00000163947|Q9NR81-3|ARHGEF3	nc|ENSG00000163947|Q9NR81-3|ARHGEF3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3191528320312	2	567.319306	1132.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.128	1	44.206	43.706	44.706	0.077515								0	0	0	0.018587	1	9752	9752		70.332	1.2271	1				19758	12801	11167	11168	24891	24891					0.06305103397380662
KRQEAIFEL	9	Unmodified	_KRQEAIFEL_					0	0	0		nc|ENSG00000163947|Q9NR81-3|ARHGEF3;ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3;ARHGEF3|p.Q132Sfs*11|1|0.04|ENSG00000163947|chr3:56753548-56753549|-/CAGGCGATCTTTGA|frameshift_variant	nc|ENSG00000163947|Q9NR81-3|ARHGEF3	nc|ENSG00000163947|Q9NR81-3|ARHGEF3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3190307617188	2	567.319306	1132.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.011	1	44.095	43.595	44.595	0.083996								0	0	0	0.0015538	1	9708	9708		93.166	18.237	1				19759	12801	11167	11168	24892	24892					0.06305103397380662
KRQKEIWHL	9	Unmodified	_KRQKEIWHL_					0	0	0		ENSG00000213341|ENST00000370397|CHUK;ENST00000590930.5_1_10:101953728-101953884:-|nuORF	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.7669677734375	3	413.243652	1236.70913	0.1761	7.2771E-05	0.13137	5.4287E-05	0.30746	0.00012706	413.24357304656553	31.432	0.27819	31.473	31.281	31.559	0.040991					16	9	3	0	0	0	0.26169	1	5887	5887		2.2828	0.19677	1	144320			19760	8340	11168	11169	24893	24893					0.10023893653851701
KRQKRRRRRR	10	Unmodified	_KRQKRRRRRR_					0	0	0			REV__TSPYL2|p.D585Gfs*41|1|0.04|ENSG00000184205|chrX:53086145-53086146|-/GTTTC|frameshift_variant	REV__TSPYL2|p.D585Gfs*41|1|0.04|ENSG00000184205|chrX:53086145-53086146|-/GTTTC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7340087890625	3	499.329558	1494.96685	0.2074	0.00010356	-0.29419	-0.0001469	-0.086792	-4.3338E-05	499.32934306501494	23.343	0.26885	23.255	23.138	23.407	-0.087608					13	9	2	0	0	0	0.32176	1	3461	3461		0	0	1	34570	+		19761	18307	11169	11170	24894	24894					0.23916068090215958
KRQLATKKD	9	Unmodified	_KRQLATKKD_					0	0	0		ENST00000268389.5_2_16:21652712-21652805:-|nuORF	ENST00000268389.5_2_16:21652712-21652805:-|nuORF	ENST00000268389.5_2_16:21652712-21652805:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.332763671875	2	544.332747	1086.65094	0.12397	6.748E-05	-0.024584	-1.3382E-05	0.099385	5.4098E-05	544.3328572079199	12.809	0.38907	12.809	12.669	13.058	0					26	13	3	0	0	0	0.31038	1	246	246		7.2892	0	1	196990			19762	9067	11170	11171	24895	24895					0.11108212008548435
KRQMRSLSKRK	11	Unmodified	_KRQMRSLSKRK_					0	0	0			REV__ENSG00000173145|ENST00000371361|NOC3L	REV__ENSG00000173145|ENST00000371361|NOC3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7637939453125	3	473.289266	1416.84597	0.017182	8.1322E-06	-1.25	-0.00059163	-1.2329	-0.0005835	473.28824163723317	26.653	0.54592	26.653	26.379	26.925	0					39	18	3	0	0	0	0.33274	1	4475	4475		3.5927	1.3399	1	175630	+		19763	17762	11171	11172	24896	24896					0.15422059541879207
KRQPSLTR	8	Unmodified	_KRQPSLTR_					0	0	0		nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG	nc|ENSG00000049130|P21583-3|KITLG	nc|ENSG00000049130|P21583-3|KITLG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2984619140625	2	493.298707	984.582862	0.025667	1.2662E-05	-0.4335	-0.00021385	-0.40784	-0.00020119	493.29839945857475	12.159	0.27705	12.159	12.087	12.364	0					25	11	3	0	0	0	0.44885	1	39	39		6.2058	0.9089	1	113430			19764	646	11172	11173	24897	24897					0.08995387148547707
KRRAVEAT	8	Unmodified	_KRRAVEAT_					0	0	0		nc|ENSG00000126756|Q9UBK9-2|UXT;ENSG00000126756|ENST00000333119|UXT;ENST00000376964.3_1_X:47517084-47518326:-|nuORF	nc|ENSG00000126756|Q9UBK9-2|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7777099609375	2	465.777608	929.540663	0.41039	0.00019115	-0.28368	-0.00013213	0.12671	5.9021E-05	465.7773555346748	84.58	0.86459	84.567	84.302	85.167	-0.01284					77	34	3	0	0	0	0.34294	1	22201	22201		7.2892	7.2892	1	800090			19765	3286	11173	11174	24898	24898					0.07307411740168845
KRREALERMEK	11	Unmodified	_KRREALERMEK_					0	0	0		nc|ENSG00000077522|P35609-2|ACTN2;ENSG00000077522|ENST00000366578|ACTN2	nc|ENSG00000077522|P35609-2|ACTN2	nc|ENSG00000077522|P35609-2|ACTN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.25	3	482.605032	1444.79327	0.2919	0.00014087	-1.7717	-0.00085502	-1.4798	-0.00071415	482.60426882101234	31.761	0.11086	31.802	31.722	31.833	0.040991					5	3	2	0	0	0	0.33146	1	5954	5954		6.6235	0.3891	1	170520			19766	1093	11174	11175	24899	24899					0.08866056688430035
KRREQRKA	8	Unmodified	_KRREQRKA_					0	0	0			REV__nc|ENSG00000148143|Q96JM2-3|ZNF462	REV__nc|ENSG00000148143|Q96JM2-3|ZNF462	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7778930664062	2	536.328331	1070.64211	0.38058	0.00020411	3.1069	0.0016663	3.4875	0.0018704	536.3300428057976	38.284	0.45452	38.284	38.064	38.518	0					25	15	2	0	0	0	0.34247	1	8008	8008		8.5933	0	1	269960	+		19767	16414	11175	11176	24900	24900					0.10961283162737345
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.985595703125	3	521.985346	1562.93421	0.19514	0.00010186	-0.0082799	-4.322E-06	0.18686	9.754E-05	521.9853748435054	96.305	2.0932	96.305	95.368	97.461	0					641	205	4	0	0	0	0.48558	4	25600	25600;25638;25751;25804		0	0	1	797060			19768	5469	11176	11177	24901;24902;24903;24904	24901					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.9853515625	3	521.985346	1562.93421	0.34952	0.00018244	-0.41028	-0.00021416	-0.060767	-3.1719E-05	521.9852278658889	93.758	0.7742	93.844	93.353	94.127	0.08667					202	61	4	0	0	0	0.48558	4	24898	24898;24936;24978;25025		0	0	1	591730			19769	5469	11176	11177	24905;24906;24907;24908	24905					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.9852905273438	3	521.985346	1562.93421	0.32695	0.00017067	-0.18143	-9.4702E-05	0.14553	7.5964E-05	521.9852442850078	94.53	0.84879	94.613	94.123	94.972	0.082779					252	68	5	0	0	0	0.48558	4	25087	25087;25126;25165;25242		0	0	1	1052800			19770	5469	11176	11177	24909;24910;24911;24912	24909					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.9856567382812	3	521.985346	1562.93421	0.30606	0.00015976	-0.34594	-0.00018058	-0.039881	-2.0817E-05	521.9853044432286	95.07	0.56837	95.153	94.907	95.476	0.082779					152	57	3	0	0	0	0.48558	2	25373	25373;25410		0	0	1	628850			19771	5469	11176	11177	24913;24914	24913					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.9852294921875	3	521.985346	1562.93421	0.2762	0.00014417	0.028582	1.4919E-05	0.30478	0.00015909	521.9853413655566	96.013	1.8312	96.091	95.402	97.233	0.077415					462	168	4	0	0	0	0.48558	3	25479	25479;25516;25550		0	0	1	1687600			19772	5469	11176	11177	24915;24916;24917	24915					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.98583984375	3	521.985346	1562.93421	0.24021	0.00012539	-0.37055	-0.00019342	-0.13034	-6.8035E-05	521.9854224699088	97.194	0.38744	97.265	97.175	97.562	0.070465					56	38	2	0	0	0	0.48558	1	26020	26020		0	0	1	277810			19773	5469	11176	11177	24918	24918					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.9854125976562	3	521.985346	1562.93421	0.45077	0.00023529	-0.1224	-6.3889E-05	0.32837	0.0001714	521.9852674791666	96.151	2.3443	96.147	95.398	97.742	-0.0038223					755	233	4	0	0	0	0.48558	10	25531	25531;25571;25614;25650;25688;25723;25760;25797;25833;26049		0	0	1	1843200			19774	5469	11176	11177	24919;24920;24921;24922;24923;24924;24925;24926;24927;24928	24919					0.17525816176703302
KRRERELRRKH	11	Unmodified	_KRRERELRRKH_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;ENST00000578653.1_1_17:27849339-27857712:+|nuORF	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	521.985346	1562.93421	0.25568	0.00013346	-0.50043	-0.00026122	-0.24475	-0.00012776	521.9853035285221	95.173	0.46336	95.173	94.966	95.43	0	0.010401	-0.00018116	NaN	0	85	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216340			19775	5469	11176	11177							0.17525816176703302
KRRGRNYKWK	10	Unmodified	_KRRGRNYKWK_					0	0	0			REV__ENSG00000185070|ENST00000330753|FLRT2	REV__ENSG00000185070|ENST00000330753|FLRT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.6098327636719	3	464.609216	1390.80582	0.14508	6.7406E-05	0.75817	0.00035225	0.90325	0.00041966	464.60955643742847	63.588	0.56965	63.684	63.445	64.015	0.095722					43	19	3	0	0	0	0.40943	1	15777	15777		1.7423	1.7423	1	371240	+		19776	18353	11177	11178	24929	24929					0.12604880933622553
KRRGRNYKWK	10	Unmodified	_KRRGRNYKWK_					0	0	0			REV__ENSG00000185070|ENST00000330753|FLRT2	REV__ENSG00000185070|ENST00000330753|FLRT2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	464.609216	1390.80582	0.12479	5.7978E-05	0.80973	0.00037621	0.93452	0.00043419	464.60961250943484	63.732	0.55156	63.732	63.502	64.053	0	0.014385	9.2742E-05	NaN	1.7423	49	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	548100	+		19777	18353	11177	11178							0.12604880933622553
KRRGRNYKWK	10	Unmodified	_KRRGRNYKWK_					0	0	0			REV__ENSG00000185070|ENST00000330753|FLRT2	REV__ENSG00000185070|ENST00000330753|FLRT2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	464.609216	1390.80582	0.14508	6.7406E-05	0.75817	0.00035225	0.90325	0.00041966	464.60955643742847	63.588	0.56965	63.684	63.445	64.015	0.095722	-0.034228	2.0866E-05	NaN	1.7423	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371240	+		19778	18353	11177	11178							0.12604880933622553
KRRGRNYKWK	10	Unmodified	_KRRGRNYKWK_					0	0	0			REV__ENSG00000185070|ENST00000330753|FLRT2	REV__ENSG00000185070|ENST00000330753|FLRT2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	464.609216	1390.80582	0.38293	0.00017791	0.63871	0.00029675	1.0216	0.00047466	464.6094599131694	63.746	0.53936	63.738	63.478	64.018	-0.0086746	0.019843	-0.00014563	NaN	1.7423	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	777810	+		19779	18353	11177	11178							0.12604880933622553
KRRHKREELDI	11	Unmodified	_KRRHKREELDI_					0	0	0			REV__ENST00000587682.5_1_19:44455450-44466879:+|nuORF	REV__ENST00000587682.5_1_19:44455450-44466879:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7801208496094	3	493.954941	1478.84299	0.23059	0.0001139	0.083565	4.1277E-05	0.31416	0.00015518	493.9549865208397	26.206	0.6724	26.167	25.902	26.575	-0.038671					63	23	4	0	0	0	0.3331	1	4356	4356		2.2527	1.143	1	443960	+		19780	19524	11178	11179	24930	24930					0.12272507688749101
KRRHKREELDI	11	Unmodified	_KRRHKREELDI_					0	0	0			REV__ENST00000587682.5_1_19:44455450-44466879:+|nuORF	REV__ENST00000587682.5_1_19:44455450-44466879:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7801208496094	3	493.954941	1478.84299	0.38955	0.00019242	-0.090468	-4.4687E-05	0.29908	0.00014773	493.9549073343075	26.312	0.68762	26.289	26.013	26.7	-0.022236					63	23	4	0	0	0	0.33336	1	4393	4393		1.1098	0.74308	1	412910	+		19781	19524	11178	11179	24931	24931					0.12272507688749101
KRRIMWHIDYR	11	Unmodified	_KRRIMWHIDYR_					0	0	0		ENSG00000181291|ENST00000631683|TMEM132E	ENSG00000181291|ENST00000631683|TMEM132E	ENSG00000181291|ENST00000631683|TMEM132E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7567138671875	3	525.289266	1572.84597	0.78794	0.0004139	0.48674	0.00025568	1.2747	0.00066957	525.289334588573	32.104	0.61035	32.146	31.994	32.605	0.042362					63	21	4	0	0	0	0.33336	1	6125	6125		1.1098	0.65524	1	402230			19782	7229	11179	11180	24932	24932					0.08246059541920658
KRRKEDLELK	10	Unmodified	_KRRKEDLELK_					0	0	0			REV__nc|ENSG00000188895|Q68DK7-3|MSL1	REV__nc|ENSG00000188895|Q68DK7-3|MSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.93310546875	3	438.933254	1313.77793	-0.30224	-0.00013266	-0.21965	-9.6411E-05	-0.52189	-0.00022908	438.933161550592	27.689	0.56659	27.678	27.499	28.066	-0.011562					47	19	3	0	0	0	0.37383	1	4790	4790		8.2864	0.85736	1	412840	+		19783	18579	11180	11181	24933	24933					0.13359513162913572
KRRKESISP	9	Unmodified	_KRRKESISP_					0	0	0			REV__ENST00000603885.5_1_3:46966981-47017871:-|nuORF	REV__ENST00000603885.5_1_3:46966981-47017871:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.34521484375	2	550.830372	1099.64619	-0.047731	-2.6292E-05	3.5866	0.0019756	3.5389	0.0019493	551.3343217344398	12.302	0.40623	12.234	11.999	12.405	-0.06806					34	16	4	0	0	0	0.26188	1	83	83		1.6526	0.32309	1	32761	+		19784	22651	11181	11182	24934	24934					0.1003532786580763
KRRKREAY	8	Unmodified	_KRRKREAY_					0	0	0			REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.2979125976562	2	553.830706	1105.64686	0.19309	0.00010694	-1.6675	-0.00092352	-1.4744	-0.00081658	553.8297475090882	97.234	0.28078	97.304	97.112	97.393	0.070465					39	27	2	0	0	0	0.344	1	25987	25987		2.5775	0.51773	1	95114	+		19785	17267	11182	11183	24935	24935					0.09826167305527633
KRRKREAY	8	Unmodified	_KRRKREAY_					0	0	0			REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.830706	1105.64686	0.033189	1.8381E-05	-1.1899	-0.00065903	-1.1568	-0.00064065	553.8299685224716	97.252	0.21357	97.252	97.15	97.363	0	-0.026414	0.00028212	NaN	2.5775	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64387	+		19786	17267	11182	11183							0.09826167305527633
KRRKSKFRTY	10	Unmodified	_KRRKSKFRTY_					0	0	0			REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2763671875	3	457.277355	1368.81024	0.20036	9.162E-05	-0.49023	-0.00022417	-0.28987	-0.00013255	457.27791854537946	96.209	2.7999	96.205	94.423	97.223	-0.0038147					443	267	3	0	0	0	0.40943	1	25718	25718		1.7423	0.28716	1	725440	+		19787	23047	11183	11184	24936	24936					0.14058345356556856
KRRLEAFLY	9	Unmodified	_KRRLEAFLY_					0	0	0		ENST00000234296.6_1_2:201776004-201776058:-|nuORF	ENST00000234296.6_1_2:201776004-201776058:-|nuORF	ENST00000234296.6_1_2:201776004-201776058:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.2864379882812	2	598.35094	1194.68733	0.51318	0.00030706	-1.8534	-0.001109	-1.3402	-0.0008019	598.3493772716706	66.501	0.55083	66.585	66.467	67.018	0.083832					29	19	2	0	0	0	0.25526	1	16734	16734		7.9102	1.187	1	169160			19788	8871	11184	11185	24937	24937					0.09777088905275377
KRRLFPPWI	9	Unmodified	_KRRLFPPWI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8727416992188	2	606.871843	1211.72913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.3	1	113.31	112.81	113.81	0.014824								0	0	0	0.26704	1	29480	29480		0.6015	0	1				19789	6781	11185	11186	24938	24938					0.13173689384484533
KRRQEEML	8	Unmodified	_KRRQEEML_					0	0	0		nc|ENSG00000123572|Q7Z2Y5-2|NRK;ENSG00000123572|ENST00000243300|NRK	nc|ENSG00000123572|Q7Z2Y5-2|NRK	nc|ENSG00000123572|Q7Z2Y5-2|NRK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2953491210938	2	545.295307	1088.57606	0.39574	0.00021579	0.17342	9.4563E-05	0.56915	0.00031036	545.2954051133681	16.151	0.40942	16.037	15.894	16.304	-0.11434					23	13	2	0	0	0	0.34378	1	1253	1253		3.9444	0	1	97118			19790	3114	11186	11187	24939	24939					0.035317062056719806
KRRQEIEQK	9	Unmodified	_KRRQEIEQK_					0	0	0		PNN|p.I691Tfs*7|1|0.09|ENSG00000100941|chr14:39181780-39181781|-/CTCTCAC|frameshift_variant;ENSG00000100941|ENST00000216832|PNN	PNN|p.I691Tfs*7|1|0.09|ENSG00000100941|chr14:39181780-39181781|-/CTCTCAC|frameshift_variant	PNN|p.I691Tfs*7|1|0.09|ENSG00000100941|chr14:39181780-39181781|-/CTCTCAC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2468566894531	3	405.570316	1213.68912	-0.29335	-0.00011897	-0.076316	-3.0952E-05	-0.36966	-0.00014992	405.57027977981505	17.603	0.27614	17.486	17.355	17.631	-0.11739					19	9	3	0	0	0	0.25706	1	1668	1668		4.1895	0	1	36059			19791	1648	11187	11188	24940	24940					0.0908209792321486
KRRRRELRRLR	11	Unmodified	_KRRRRELRRLR_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.4525756835938	3	532.348618	1594.02403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.4	1	112.38	111.88	112.88	-0.015625								0	0	0	0.38222	1	29235	29235		0.094841	0.094841	1		+		19792	23149	11188	11189	24941	24941					0.25077490575927186
KRRRYKVVEEE	11	Unmodified	_KRRRYKVVEEE_					0	0	0			REV__ENST00000484142.1_1_2:64068347-64069260:+|nuORF	REV__ENST00000484142.1_1_2:64068347-64069260:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.95123291015625	3	497.951196	1490.83176	-0.0073964	-3.683E-06	0.26318	0.00013105	0.25578	0.00012737	497.95130073673374	18.591	0.59072	18.533	18.255	18.846	-0.058174					48	20	3	0	0	0	0.48247	1	1965	1965		0.40827	0	1	141630	+		19793	21528	11189	11190	24942	24942					0.10597685594643735
KRRRYKVVEEE	11	Unmodified	_KRRRYKVVEEE_					0	0	0			REV__ENST00000484142.1_1_2:64068347-64069260:+|nuORF	REV__ENST00000484142.1_1_2:64068347-64069260:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.3146667480469	3	497.951196	1490.83176	-0.0073964	-3.683E-06	0.26318	0.00013105	0.25578	0.00012737	497.95130073673374	18.591	0.59072	18.533	18.255	18.846	-0.058174					48	20	3	0	0	0	0.33348	1	1932	1932		0.40827	0	1	141630	+		19794	21528	11189	11190	24943	24943					0.10597685594643735
KRRSRNTAVE	10	Unmodified	_KRRSRNTAVE_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.L2113Dfs*17|1|0.07|ENSG00000197321|chr10:29462341-29462342|AG/-|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8475341796875	2	608.847084	1215.67962	0.50749	0.00030899	-0.12153	-7.3996E-05	0.38596	0.00023499	608.8470185079906	84.018	2.8329	84.001	83.288	86.121	-0.016823					302	115	3	0	0	0	0.39935	1	22331	22331		3.5965	0	1	2678900			19795	7952	11190	11191	24944	24944					0.08040329637719879
KRRSVRFI	8	Unmodified	_KRRSVRFI_					0	0	0		nc|ENSG00000009765|Q6PHW0-7|IYD;nc|ENSG00000009765|Q6PHW0-3|IYD;nc|ENSG00000009765|Q6PHW0-6|IYD;nc|ENSG00000009765|Q6PHW0-5|IYD;ENSG00000009765|ENST00000344419|IYD;nc|ENSG00000009765|Q6PHW0-4|IYD	nc|ENSG00000009765|Q6PHW0-7|IYD	nc|ENSG00000009765|Q6PHW0-7|IYD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8062744140625	2	531.338167	1060.66178	0.19135	0.00010167	2.402	0.0012763	2.5934	0.001378	531.33941300164	18.343	0.28732	18.285	18.115	18.402	-0.058174					15	9	2	0	0	0	0.34272	1	1926	1926		7.9102	0	1	41401			19796	410	11191	11192	24945	24945					0.13387659173508837
KRRYRDTD	8	Unmodified	_KRRYRDTD_					0	0	0			REV__ENST00000482827.1_1_X:74722059-74742841:-|nuORF	REV__ENST00000482827.1_1_X:74722059-74742841:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2938842773438	2	555.294153	1108.57375	-0.11199	-6.2185E-05	-0.69125	-0.00038385	-0.80323	-0.00044603	555.2939106279421	13.812	0.31531	13.746	13.602	13.917	-0.066068					24	10	3	0	0	0	0.34367	1	539	539		4.3292	0	1	133910	+		19797	21511	11192	11193	24946	24946					0.023809937922123936
KRSGSLLKS	9	Unmodified	_KRSGSLLKS_					0	0	0		ENST00000396987.7_1_8:41480416-41480683:+|nuORF	ENST00000396987.7_1_8:41480416-41480683:+|nuORF	ENST00000396987.7_1_8:41480416-41480683:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2858581542969	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.75	1	117.72	117.22	118.22	-0.024147								0	0	0	0.26044	1	30465	30465		2.9952	0.69251	1				19798	10129	11193	11194	24947	24947					0.09896851571465959
KRSKRQTLREA	11	Unmodified	_KRSKRQTLREA_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.6082763671875	3	458.275903	1371.80588	0.24792	0.00011362	0.27429	0.0001257	0.52221	0.00023932	458.27569162504136	88.101	1.3952	88.099	87.081	88.476	-0.0028381					105	71	3	0	0	0	0.33189	1	23218	23218		3.5927	3.1844	1	340740			19799	1156	11194	11195	24948	24948					0.13484836142993117
KRTANAQIP	9	Unmodified	_KRTANAQIP_					0	0	0		ENST00000429272.1_1_2:131051524-131051887:+|nuORF	ENST00000429272.1_1_2:131051524-131051887:+|nuORF	ENST00000429272.1_1_2:131051524-131051887:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7906188964844	2	499.790715	997.566878	0.25651	0.0001282	-0.056208	-2.8092E-05	0.2003	0.00010011	499.79067308624957	22.16	0.78606	22.16	21.922	22.708	0					55	27	3	0	0	0	0.33276	1	3104	3104		3.9444	0.3479	1	234760			19800	10449	11195	11196	24949	24949					0.06799680911649375
KRTCLKPHPV	10	Unmodified	_KRTCLKPHPV_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8460693359375	2	589.844968	1177.67538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.14	1	119.12	118.62	119.62	-0.024147								0	0	0	0.38201	1	30766	30766		0.45834	0	1		+		19801	23262	11196	11197	24950	24950					0.09365148890401542
KRTCLMKF	8	Carbamidomethyl (C),Oxidation (M)	_KRTC(Carbamidomethyl (C))LM(Oxidation (M))KF_	KRTC(1)LMKF	KRTCLM(1)KF	KRTC(51)LMKF	KRTCLM(51)KF	0	1	1			REV__ENSG00000137547|ENST00000260102|MRPL15	REV__ENSG00000137547|ENST00000260102|MRPL15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.29345703125	2	550.291179	1098.56781	0.55516	0.0003055	0.64607	0.00035553	1.2012	0.00066103	550.2916374766619	32.593	2.0387	32.593	31.8	33.839	0					220	72	5	0	0	0	0.15515	2	6049	6049;6098		50.855	50.855	1	3920300	+		19802	15869	11197	11198	24951;24952	24951	24	998			0.02246435964707416
KRTCLMKF	8	Carbamidomethyl (C),Oxidation (M)	_KRTC(Carbamidomethyl (C))LM(Oxidation (M))KF_	KRTC(1)LMKF	KRTCLM(1)KF	KRTC(51)LMKF	KRTCLM(51)KF	0	1	1			REV__ENSG00000137547|ENST00000260102|MRPL15	REV__ENSG00000137547|ENST00000260102|MRPL15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2935791015625	2	550.291179	1098.56781	0.66509	0.00036599	0.42261	0.00023256	1.0877	0.00059855	550.2915460716258	32.463	1.9126	32.518	31.836	33.749	0.055309					207	68	5	0	0	0	0.15515	2	6025	6025;6077		50.855	50.855	1	4643900	+		19803	15869	11197	11198	24953;24954	24953	24	998			0.02246435964707416
KRTCLMKF	8	Carbamidomethyl (C),Oxidation (M)	_KRTC(Carbamidomethyl (C))LM(Oxidation (M))KF_	KRTC(1)LMKF	KRTCLM(1)KF	KRTC(60)LMKF	KRTCLM(60)KF	0	1	1			REV__ENSG00000137547|ENST00000260102|MRPL15	REV__ENSG00000137547|ENST00000260102|MRPL15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.293212890625	2	550.291179	1098.56781	0.44106	0.00024271	0.59836	0.00032927	1.0394	0.00057198	550.2916854403506	32.534	1.9963	32.588	31.815	33.811	0.054371					204	71	5	0	0	0	0.10069	2	6022	6022;6075		60.39	60.39	1	4510900	+		19804	15869	11197	11198	24955;24956	24955	24	998			0.02246435964707416
KRTGVSLEK	9	Unmodified	_KRTGVSLEK_					0	0	0		nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3061828613281	2	509.306198	1016.59784	-0.17188	-8.7539E-05	0.85795	0.00043696	0.68607	0.00034942	509.30671437854977	12.545	0.71148	12.477	12.253	12.964	-0.06806					37	23	4	0	0	0	0.17555	1	152	152		27.223	0	1	221770			19805	7425	11198	11199	24957	24957					0.09020834225896124
KRTIRKSF	8	Unmodified	_KRTIRKSF_					0	0	0			REV__ENST00000416074.6_1_3:9971735-9974750:+|nuORF	REV__ENST00000416074.6_1_3:9971735-9974750:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7489013671875	2	518.324725	1034.6349	0.41575	0.00021549	0.021118	1.0946E-05	0.43687	0.00022644	518.3245442660365	36.877	0.19159	36.964	36.841	37.032	0.08741					9	6	2	0	0	0	0.34319	1	7528	7528		5.7604	0	1	47391	+		19806	20814	11199	11200	24958	24958					0.11896550562323682
KRTTEHKV	8	Unmodified	_KRTTEHKV_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;ENST00000478998.5_1_3:108124174-108178278:-|nuORF	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7908630371094	2	499.790715	997.566878	0.27394	0.00013691	-0.010402	-5.1986E-06	0.26354	0.00013172	499.7906678150833	22.204	0.77948	22.103	21.944	22.723	-0.10034					65	28	3	0	0	0	0.45307	1	3175	3175		4.756	0.42677	1	269650			19807	4615	11200	11201	24959	24959					0.06799680911660744
KRTTGVCI	8	Unmodified	_KRTTGVCI_					0	0	0		nc|ENSG00000235865|Q9NRJ2|GSN-AS1	nc|ENSG00000235865|Q9NRJ2|GSN-AS1	nc|ENSG00000235865|Q9NRJ2|GSN-AS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.56195068359375	2	439.249837	876.485122	-0.26321	-0.00011561	-0.2853	-0.00012532	-0.54851	-0.00024093	439.24962734541066	13.179	0.25107	13.179	13.058	13.309	0					12	8	2	0	0	0	0.344	1	311	311		2.5775	1.976	1	32485			19808	12959	11201	11202	24960	24960					0.041938622282032156
KRTYTRPEKIF	11	Unmodified	_KRTYTRPEKIF_					0	0	0			REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|38|3|sense	REV__L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|38|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2778015136719	3	480.277021	1437.80923	0.69855	0.0003355	0.089734	4.3097E-05	0.78828	0.00037859	480.2772625814088	47.51	0.47233	47.554	47.298	47.771	0.04332					41	17	3	0	0	0	0.44088	1	10764	10764		5.8681	0.46543	1	874540	+		19809	22781	11202	11203	24961	24961					0.10784086196986209
KRVFFRVSH	9	Unmodified	_KRVFFRVSH_					0	0	0			REV__ENST00000478867.1_1_3:113604431-113604875:+|nuORF	REV__ENST00000478867.1_1_3:113604431-113604875:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.3449096679688	2	588.343449	1174.67235	-0.04718	-2.7758E-05	0.81579	0.00047996	0.76861	0.00045221	588.3459058587782	12.968	0.57508	12.901	12.64	13.215	-0.067495					42	19	4	0	0	0	0.35563	1	347	347		0.52476	0	1	65817	+		19810	21460	11203	11204	24962	24962					0.09199641827945015
KRVQLLKKF	9	Unmodified	_KRVQLLKKF_					0	0	0		nc|ENSG00000091428|Q8WZA2-2|RAPGEF4;nc|ENSG00000091428|Q8WZA2-5|RAPGEF4;nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;nc|ENSG00000091428|Q8WZA2-3|RAPGEF4;ENSG00000091428|ENST00000397081|RAPGEF4	nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8046875	2	580.387326	1158.7601	0.43676	0.00025349	0.072614	4.2144E-05	0.50937	0.00029563	580.3873350457318	36.715	0.25273	36.715	36.562	36.815	0					11	8	2	0	0	0	0.25938	1	7475	7475		4.3292	0	1	86399			19811	1401	11204	11205	24963	24963					0.1870684269870253
KRVQLLKKF	9	Unmodified	_KRVQLLKKF_					0	0	0		nc|ENSG00000091428|Q8WZA2-2|RAPGEF4;nc|ENSG00000091428|Q8WZA2-5|RAPGEF4;nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;nc|ENSG00000091428|Q8WZA2-3|RAPGEF4;ENSG00000091428|ENST00000397081|RAPGEF4	nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8048095703125	2	580.387326	1158.7601	0.42619	0.00024736	0.36856	0.00021391	0.79475	0.00046126	580.3874273910704	36.591	0.35785	36.679	36.566	36.924	0.08741					16	12	2	0	0	0	0.24913	1	7445	7445		7.9102	5.8504	1	137450			19812	1401	11204	11205	24964	24964					0.1870684269870253
KRWCCHVIR	9	Unmodified	_KRWCCHVIR_					0	0	0			REV__ENST00000476112.1_1_10:115613538-115614019:-|nuORF	REV__ENST00000476112.1_1_10:115613538-115614019:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3285522460938	2	600.815687	1199.61682	0.1927	0.00011577	-1.4659	-0.00088072	-1.2732	-0.00076495	600.8146639563283	12.809	0.4617	12.71	12.549	13.011	-0.099291					20	15	2	0	0	0	0.25988	1	249	249		3.9444	2.1002	1	34919	+		19813	21415	11205	11206	24965	24965					0.024997690442887688
KRWFKFRKRKG	11	Unmodified	_KRWFKFRKRKG_					0	0	0		nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.9854125976562	3	512.984395	1535.93135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.71	1	92.71	92.21	93.21	0								0	0	0	0.38222	1	24668	24668		0.094841	0.011491	1				19814	12804	11206	11207	24966	24966					0.18482592789837327
KRWFKFRKRKG	11	Unmodified	_KRWFKFRKRKG_					0	0	0		nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9854736328125	3	512.984395	1535.93135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.383	1	93.47	92.97	93.97	0.08667								0	0	0	0.38186	1	24868	24868		0.50596	0.4226	1				19815	12804	11206	11207	24967	24967					0.18482592789837327
KRWLREVF	8	Unmodified	_KRWLREVF_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3302001953125	2	567.33255	1132.65055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.65	1	112.65	112.15	113.15	0								0	0	0	0.37664	1	29272	29272		2.5775	0.27475	1				19816	6752	11207	11208	24968	24968					0.08952837079368692
KRWPAPPL	8	Unmodified	_KRWPAPPL_					0	0	0			REV__ENST00000505849.5_1_1:1326237-1326890:-|nuORF	REV__ENST00000505849.5_1_1:1326237-1326890:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.3065490722656	2	482.789987	963.565421	0.39958	0.00019291	-0.70624	-0.00034097	-0.30666	-0.00014805	482.78954734600364	79.039	0.65063	79.1	78.789	79.44	0.060577					48	29	2	0	0	0	0.34218	1	20389	20389		9.3474	1.4373	1	163060	+		19817	21746	11208	11209	24969	24969					0.08218091613559864
KRWRIWSLF	9	Unmodified	_KRWRIWSLF_					0	0	0		ENST00000396253.7_1_11:18327777-18327885:-|nuORF	ENST00000396253.7_1_11:18327777-18327885:-|nuORF	ENST00000396253.7_1_11:18327777-18327885:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.59033203125	3	431.252258	1290.73495	0.08148	3.5138E-05	2.6352	0.0011364	2.7167	0.0011716	431.25240137314006	32.734	0.92002	32.734	32.199	33.119	0					65	32	4	0	0	0	0.2524	1	6312	6312		11.495	6.7788	1	534740			19818	10109	11209	11210	24970	24970					0.10120787896130423
KRWRIWSLF	9	Unmodified	_KRWRIWSLF_					0	0	0		ENST00000396253.7_1_11:18327777-18327885:-|nuORF	ENST00000396253.7_1_11:18327777-18327885:-|nuORF	ENST00000396253.7_1_11:18327777-18327885:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.5904846191406	3	431.252258	1290.73495	0.11732	5.0594E-05	3.5171	0.0015168	3.6344	0.0015674	431.2537556348817	32.645	0.49608	32.701	32.395	32.891	0.055313					28	17	2	0	0	0	0.25949	1	6279	6279		4.897	2.0537	1	597050			19819	10109	11209	11210	24971	24971					0.10120787896130423
KRWRYIMEEKP	11	Unmodified	_KRWRYIMEEKP_					0	0	0			REV__nc|ENSG00000182256|Q99928-2|GABRG3	REV__nc|ENSG00000182256|Q99928-2|GABRG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2747192382812	3	512.609894	1534.80785	0.16655	8.5375E-05	3.7952	0.0019454	3.9617	0.0020308	512.9462828029931	46.257	0.32379	46.257	45.974	46.298	0					16	11	2	0	0	0	0.33316	1	10336	10336		2.084	1.6757	1	296730	+		19820	18186	11210	11211	24972	24972					0.061841288365485525
KRWRYIMEEKP	11	Unmodified	_KRWRYIMEEKP_					0	0	0			REV__nc|ENSG00000182256|Q99928-2|GABRG3	REV__nc|ENSG00000182256|Q99928-2|GABRG3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	512.609894	1534.80785	0.27401	0.00014046	4.375	0.0022427	4.649	0.0023831	512.6121374308474	46.168	0.3577	46.233	45.951	46.309	0.065048	-0.011888	0.00020187	NaN	2.084	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331980	+		19821	18186	11210	11211							0.061841288365485525
KRYFIHIKKIF	11	Unmodified	_KRYFIHIKKIF_					0	0	0		ENSG00000198169|ENST00000292562|ZNF251	ENSG00000198169|ENST00000292562|ZNF251	ENSG00000198169|ENST00000292562|ZNF251	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3099060058594	3	498.309885	1491.90782	0.342	0.00017042	-0.10935	-5.4492E-05	0.23265	0.00011593	498.3096617876876	91.999	0.60635	91.999	91.725	92.331	0					118	40	4	0	0	0	0.48495	1	24456	24456		0.08335	0	1	740840			19822	8044	11211	11212	24973	24973					0.1815473423266667
KRYFIHIKKIF	11	Unmodified	_KRYFIHIKKIF_					0	0	0		ENSG00000198169|ENST00000292562|ZNF251	ENSG00000198169|ENST00000292562|ZNF251	ENSG00000198169|ENST00000292562|ZNF251	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3100280761719	3	498.309885	1491.90782	0.37882	0.00018877	-0.062916	-3.1352E-05	0.31591	0.00015742	498.3097733753652	91.836	1.3092	91.927	91.318	92.627	0.090675					269	92	4	0	0	0	0.48486	1	24596	24596		0.094841	0	1	1500100			19823	8044	11211	11212	24974	24974					0.1815473423266667
KRYNLRKFA	9	Unmodified	_KRYNLRKFA_					0	0	0			REV__ENST00000586500.1_1_19:13993617-13994323:-|nuORF	REV__ENST00000586500.1_1_19:13993617-13994323:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3587646484375	2	598.356557	1194.69856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.095	1	95.093	94.593	95.593	-0.0020142								0	0	0	0.2575	1	25393	25393		3.9444	1.4459	1		+		19824	15547	11212	11213	24975	24975					0.10899910999410167
KRYQVKFRR	9	Unmodified	_KRYQVKFRR_					0	0	0		ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.231689453125	3	427.594796	1279.76256	0.41611	0.00017793	-0.69117	-0.00029554	-0.27507	-0.00011762	427.9292901796069	36.557	0.30458	36.65	36.486	36.79	0.093018					11	10	2	0	0	0	0.26169	1	7445	7445		2.2828	1.5851	1	81433			19825	3041	11213	11214	24976	24976					0.13386691156347297
KSADPLKSK	9	Unmodified	_KSADPLKSK_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7;ENST00000457023.1_1_3:15247773-15262489:+|nuORF	ENSG00000131375|ENST00000253693|CAPN7;ENST00000457023.1_1_3:15247773-15262489:+|nuORF	ENSG00000131375|ENST00000253693|CAPN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.28729248046875	2	487.287474	972.560395	-0.13141	-6.4034E-05	-0.46613	-0.00022714	-0.59754	-0.00029117	487.287140640724	12.75	0.59083	12.682	12.345	12.936	-0.067496					32	19	2	0	0	0	0.25949	1	233	233		4.897	1.3005	1	108370			19826	3557;10701	11214	11215	24977	24977					0.0730174296027144
KSALIKKPL	9	Unmodified	_KSALIKKPL_					0	0	0			REV__ENSG00000104472|ENST00000220913|CHRAC1	REV__ENSG00000104472|ENST00000220913|CHRAC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.30584716796875	2	499.342052	996.669552	0.15519	7.7495E-05	0.10428	5.2071E-05	0.25947	0.00012957	499.342064683255	19.196	0.42346	19.196	18.978	19.401	0					25	14	2	0	0	0	0.25938	1	2135	2135		4.3292	0	1	53136	+		19827	14411	11215	11216	24978	24978					0.17108373650421527
KSARRLFHL	9	Unmodified	_KSARRLFHL_					0	0	0			REV__nc|ENSG00000134057|P14635-2|CCNB1	REV__nc|ENSG00000134057|P14635-2|CCNB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3431396484375	2	564.343449	1126.67235	0.14303	8.0719E-05	-1.5481	-0.00087367	-1.4051	-0.00079295	564.3427120327972	23.914	0.52438	23.914	23.669	24.194	0					39	17	3	0	0	0	0.3208	1	3630	3630		5.7319	0.83484	1	144270	+		19828	15652	11216	11217	24979	24979					0.11407641827918269
KSAYFAEKLYK	11	Unmodified	_KSAYFAEKLYK_					0	0	0		ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000471395.1_1_2:70045687-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.5580139160156	3	449.915089	1346.72344	0.24102	0.00010844	-0.41801	-0.00018807	-0.17698	-7.9626E-05	449.9145913845055	31.834	0.33304	31.875	31.647	31.98	0.040991					14	11	2	0	0	0	0.33207	1	6004	6004		5.5233	1.9362	1	284340			19829	7921	11217	11218	24980	24980					0.06394501291470078
KSCKQHSK	8	Unmodified	_KSCKQHSK_					0	0	0			REV__nc|ENSG00000227345|Q86W56-3|PARG	REV__nc|ENSG00000227345|Q86W56-3|PARG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.21722412109375	2	473.250369	944.486184	-0.18581	-8.7933E-05	-0.54985	-0.00026022	-0.73566	-0.00034815	473.2499645884724	14.928	0.6229	14.928	14.759	15.382	0					28	21	2	0	0	0	0.34198	1	924	924		10.824	4.1008	1	114500	+		19830	19124	11218	11219	24981	24981					0.011720765971176661
KSCRFRPRWLL	11	Unmodified	_KSCRFRPRWLL_					0	0	0		ENST00000332783.11_1_15:101152449-101152524:+|nuORF	ENST00000332783.11_1_15:101152449-101152524:+|nuORF	ENST00000332783.11_1_15:101152449-101152524:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.81610107421875	3	487.946841	1460.81869	-0.1018	-4.9671E-05	4.1733	0.0020364	4.0715	0.0019867	487.94919327763483	28.156	0.26976	28.156	28.008	28.277	0					13	8	2	0	0	0	0.33296	1	4909	4909		2.6312	1.5215	1	54547			19831	9455	11219	11220	24982	24982					0.10671576001527683
KSCRFRPRWLL	11	Unmodified	_KSCRFRPRWLL_					0	0	0		ENST00000332783.11_1_15:101152449-101152524:+|nuORF	ENST00000332783.11_1_15:101152449-101152524:+|nuORF	ENST00000332783.11_1_15:101152449-101152524:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.81591796875	3	487.946841	1460.81869	0.015348	7.4889E-06	4.1211	0.0020109	4.1365	0.0020184	487.94910696192096	28.307	0.75518	28.303	27.604	28.359	-0.0042572					31	26	2	0	0	0	0.3325	1	4914	4914		4.1166	1.8639	1	108690			19832	9455	11219	11220	24983	24983					0.10671576001527683
KSCVPRWQTCI	11	Unmodified	_KSCVPRWQTCI_					0	0	0		ENST00000490579.1_1_3:183995094-184008674:+|nuORF;ENST00000488401.5_1_3:183993962-184009147:+|nuORF;nc|ENSG00000145194|P0DPD6-3|ECE2;ENSG00000145194|ENST00000404464|ECE2;nc|ENSG00000145194|P0DPD6|ECE2;nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2	ENST00000490579.1_1_3:183995094-184008674:+|nuORF	ENST00000490579.1_1_3:183995094-184008674:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2103271484375	3	440.889892	1319.64785	0.10366	4.5704E-05	2.8464	0.001255	2.9501	0.0013007	440.89183783951756	104.12	0.029221	104.12	104.11	104.13	0.0011444					4	2	2	0	0	0	0.33263	1	27673	27673		3.8459	2.6311	1	187400			19833	4635	11220	11221	24984	24984					0.0008087756791610445
KSDEETLHF	9	Unmodified	_KSDEETLHF_					0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8298950195312	2	553.261653	1104.50875	0.54041	0.00029899	-4.4852	-0.0024815	-3.9448	-0.0021825	553.2620035404319	82.902	1.5718	82.902	82.313	83.885	0					91	59	3	0	0	0	0.25202	1	21720	21720		10.824	2.9138	1	176650	+		19834	16557	11221	11222	24985	24985					-0.039320455242886965
KSDKTYMGLL	10	Unmodified	_KSDKTYMGLL_					0	0	0			REV__L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|43|1|sense	REV__L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|43|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3212280273438	2	578.307549	1154.60055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.177	1	80.242	79.742	80.742	0.065094								0	0	0	0.30188	1	20814	20814		27.629	6.0918	1		+		19835	22816	11222	11223	24986	24986					0.02942921568546808
KSDLYRVHFLL	11	Unmodified	_KSDLYRVHFLL_					0	0	0		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.29937744140625	3	464.266233	1389.77687	0.23159	0.00010752	-0.16332	-7.5823E-05	0.068273	3.1697E-05	464.2661935441616	40.316	0.82885	40.408	39.917	40.745	0.09267					53	29	2	0	0	0	0.33056	1	8534	8534		8.7518	3.2285	1	398620			19836	3928	11223	11224	24987	24987					0.09757298794011149
KSDLYRVHFLL	11	Unmodified	_KSDLYRVHFLL_					0	0	0		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.2994689941406	3	464.266233	1389.77687	0.28735	0.00013341	-0.22092	-0.00010257	0.066424	3.0838E-05	464.266115261543	40.314	1.0412	40.413	39.949	40.99	0.099407					80	37	3	0	0	0	0.3287	1	8498	8498		8.7518	1.7147	1	287390			19837	3928	11223	11224	24988	24988					0.09757298794011149
KSDPNRLRT	9	Unmodified	_KSDPNRLRT_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7954711914062	2	543.804354	1085.59415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.558	1	37.558	37.058	38.058	0								0	0	0	0.21009	1	7746	7746		19.257	3.1079	1		+		19838	13129	11224	11225	24989	24989					0.05478164452051715
KSDVPINLKN	10	Unmodified	_KSDVPINLKN_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.322998046875	2	564.324588	1126.63462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.115	1	12.115	11.615	12.615	0								0	0	0	0.36441	1	30	30		8.7454	0.83525	1				19839	5305	11225	11226	24990	24990					0.0763708605179545
KSEARLKSK	9	Unmodified	_KSEARLKSK_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2987060546875	2	523.819473	1045.62439	0.14718	7.7097E-05	-0.46244	-0.00024224	-0.31526	-0.00016514	523.8192243484673	12.635	0.23976	12.536	12.433	12.673	-0.099291					12	7	2	0	0	0	0.25949	1	183	183		4.897	1.3005	1	50391			19840	659	11226	11227	24991	24991					0.1034052311722462
KSELGCGWSKK	11	Unmodified	_KSELGCGWSKK_					0	0	0			REV__nc|ENSG00000141485|Q86YT5-2|SLC13A5	REV__nc|ENSG00000141485|Q86YT5-2|SLC13A5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.82861328125	2	611.816073	1221.61759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.45	1	48.45	47.95	48.95	0								0	0	0	0.2792	1	11087	11087		23.79	1.0535	1		+		19841	16078	11227	11228	24992	24992					0.015648421743435392
KSEPVSPQDF	10	Unmodified	_KSEPVSPQDF_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2614135742188	2	567.277303	1132.54005	0.20887	0.00011849	0.3759	0.00021324	0.58478	0.00033173	567.2770647195603	97.415	0.70264	97.485	97.098	97.801	0.070465					113	75	2	0	0	0	0.31358	1	26130	26130		13.906	1.3745	1	371790			19842	7191	11228	11229	24993	24993					-0.020914724902013404
KSFDTSLIRK	10	Unmodified	_KSFDTSLIRK_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.845947265625	2	597.845687	1193.67682	0.44356	0.00026518	0.059781	3.574E-05	0.50334	0.00030092	597.8457228684807	28.755	0.40005	28.755	28.578	28.978	0					20	13	2	0	0	0	0.32615	1	5079	5079		17.049	10.418	1	168490			19843	7281	11229	11230	24994	24994					0.08773061460192366
KSFDTSLIRK	10	Unmodified	_KSFDTSLIRK_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8460083007812	2	597.845687	1193.67682	0.40344	0.0002412	-0.01864	-1.1144E-05	0.3848	0.00023005	597.8456571314656	28.731	0.34781	28.727	28.519	28.867	-0.0042572					19	11	2	0	0	0	0.36279	1	5071	5071		10.315	5.4182	1	207520			19844	7281	11229	11230	24995	24995					0.08773061460192366
KSFDTSLIRK	10	Unmodified	_KSFDTSLIRK_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	597.845687	1193.67682	0.18996	0.00011357	0.25466	0.00015225	0.44462	0.00026581	597.8458325601232	28.723	0.36548	28.724	28.606	28.971	0.0004673	-0.011543	0.00015589	NaN	17.049	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182980			19845	7281	11229	11230							0.08773061460192366
KSFEAPIKL	9	Unmodified	_KSFEAPIKL_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;nc|ENSG00000101294|Q8TCT9-5|HM13;ENST00000483310.5_1_20:30136863-30150236:+|nuORF;ENST00000472128.5_1_20:30136905-30155443:+|nuORF;ENST00000492709.5_1_20:30132820-30157019:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.80810546875	2	516.808042	1031.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.941	1	44.025	43.525	44.525	0.083996								0	0	0	0.075242	1	9686	9686		53.317	13.367	1				19846	1681	11230	11231	24996	24996					0.08699503999741864
KSFEEKVENLK	11	Unmodified	_KSFEEKVENLK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;nc|ENSG00000076554|P55327-5|TPD52;ENST00000520877.5_1_8:80950353-80963533:-|nuORF;ENST00000521618.1_1_8:80950353-80954926:-|nuORF;ENST00000523395.5_1_8:80950353-80963533:-|nuORF	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.91363525390625	3	450.913637	1349.71908	0.23255	0.00010486	0.024016	1.0829E-05	0.25657	0.00011569	450.9136061655749	28.848	1.1107	28.848	28.522	29.633	0					113	39	5	0	0	0	0.018457	1	5091	5091		99.318	70.037	1	1306400			19847	12589	11231	11232	24997	24997					0.05820992077883602
KSFEEKVENLK	11	Unmodified	_KSFEEKVENLK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;nc|ENSG00000076554|P55327-5|TPD52;ENST00000520877.5_1_8:80950353-80963533:-|nuORF;ENST00000521618.1_1_8:80950353-80954926:-|nuORF;ENST00000523395.5_1_8:80950353-80963533:-|nuORF	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.91387939453125	3	450.913637	1349.71908	0.14016	6.3201E-05	0.19485	8.7858E-05	0.33501	0.00015106	450.9136907834892	28.884	1.0985	28.88	28.57	29.668	-0.0042572					96	37	5	0	0	0	0.0074545	1	5100	5100		103.13	83.984	1	1627400			19848	12589	11231	11232	24998	24998					0.05820992077883602
KSFEEKVENLK	11	Unmodified	_KSFEEKVENLK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;nc|ENSG00000076554|P55327-5|TPD52;ENST00000520877.5_1_8:80950353-80963533:-|nuORF;ENST00000521618.1_1_8:80950353-80954926:-|nuORF;ENST00000523395.5_1_8:80950353-80963533:-|nuORF	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.91375732421875	3	450.913637	1349.71908	0.037225	1.6785E-05	0.19334	8.7178E-05	0.23056	0.00010396	450.91371700709834	28.86	1.1211	28.861	28.55	29.671	0.00046921					114	39	5	0	0	0	1.9515E-05	5	5087	5037;5042;5087;5134;5183		115.34	89.224	1	1426100			19849	12589	11231	11232	24999;25000;25001;25002;25003	25001					0.05820992077883602
KSFEGLFYF	9	Unmodified	_KSFEGLFYF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.2838134765625	2	569.2844	1136.55425	0.18883	0.0001075	-0.53139	-0.00030251	-0.34256	-0.00019502	569.2837796021217	75.372	0.64054	75.372	75.154	75.794	0					59	22	3	0	0	0	0.04299	2	19351	19351;19401		55.503	17.213	1	1067000			19850	4369	11232	11233	25004;25005	25004					-0.008567752712451693
KSFEGLFYF	9	Unmodified	_KSFEGLFYF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.2841796875	2	569.2844	1136.55425	0.41211	0.00023461	-0.96727	-0.00055065	-0.55515	-0.00031604	569.2836298014405	75.321	0.73375	75.373	75.102	75.836	0.052368					65	26	3	0	0	0	0.064268	2	19322	19322;19371		47.594	14.691	1	1171700			19851	4369	11232	11233	25006;25007	25006					-0.008567752712451693
KSFEGLFYF	9	Unmodified	_KSFEGLFYF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.2841796875	2	569.2844	1136.55425	0.41551	0.00023654	-0.89838	-0.00051143	-0.48287	-0.00027489	569.2835913267105	75.403	0.88251	75.371	75.109	75.992	-0.031487					68	32	3	0	0	0	0.032589	2	19344	19344;19395		59.368	21.193	1	1466400			19852	4369	11232	11233	25008;25009	25008					-0.008567752712451693
KSFFGPLEL	9	Unmodified	_KSFFGPLEL_					0	0	0		ENST00000507569.5_1_5:178987039-178989666:+|nuORF;RUFY1|p.K296Nfs*29|1|0.04|ENSG00000176783|chr5:179577130-179577131|-/AAATCAATTGAACAAAC|frameshift_variant;nc|ENSG00000176783|Q96T51-3|RUFY1;nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1	ENST00000507569.5_1_5:178987039-178989666:+|nuORF	ENST00000507569.5_1_5:178987039-178989666:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.286865234375	2	519.286943	1036.55933	0.42451	0.00022044	0.66763	0.00034669	1.0921	0.00056714	519.2873153601546	70.472	0.69233	70.472	70.24	70.933	0					56	24	3	0	0	0	0.048637	1	17876	17876		53.404	15.228	1	559450			19853	6944	11233	11234	25010	25010					0.042515285913850676
KSFFGPLEL	9	Unmodified	_KSFFGPLEL_					0	0	0		ENST00000507569.5_1_5:178987039-178989666:+|nuORF;RUFY1|p.K296Nfs*29|1|0.04|ENSG00000176783|chr5:179577130-179577131|-/AAATCAATTGAACAAAC|frameshift_variant;nc|ENSG00000176783|Q96T51-3|RUFY1;nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1	ENST00000507569.5_1_5:178987039-178989666:+|nuORF	ENST00000507569.5_1_5:178987039-178989666:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2869873046875	2	519.286943	1036.55933	0.3654	0.00018975	0.64242	0.0003336	1.0078	0.00052335	519.2872823223071	70.499	0.68819	70.559	70.299	70.987	0.060783					48	24	3	0	0	0	0.059067	1	17855	17855		49.527	14.595	1	531160			19854	6944	11233	11234	25011	25011					0.042515285913850676
KSFFGPLEL	9	Unmodified	_KSFFGPLEL_					0	0	0		ENST00000507569.5_1_5:178987039-178989666:+|nuORF;RUFY1|p.K296Nfs*29|1|0.04|ENSG00000176783|chr5:179577130-179577131|-/AAATCAATTGAACAAAC|frameshift_variant;nc|ENSG00000176783|Q96T51-3|RUFY1;nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1	ENST00000507569.5_1_5:178987039-178989666:+|nuORF	ENST00000507569.5_1_5:178987039-178989666:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.286865234375	2	519.286943	1036.55933	0.3979	0.00020662	0.71323	0.00037037	1.1111	0.000577	519.2873281118444	70.585	0.72369	70.56	70.301	71.025	-0.024872					46	25	3	0	0	0	0.14306	1	17889	17889		38.615	7.3464	1	581810			19855	6944	11233	11234	25012	25012					0.042515285913850676
KSFKQFALQR	10	Unmodified	_KSFKQFALQR_					0	0	0		nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR;ENST00000574767.5_1_17:78681670-78831736:+|nuORF;ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-2|RPTOR	nc|ENSG00000141564|Q8N122-3|RPTOR	nc|ENSG00000141564|Q8N122-3|RPTOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.5751953125	3	418.24354	1251.70879	-0.22082	-9.2358E-05	3.2594	0.0013632	3.0385	0.0012709	418.2448699608391	15.979	0.68634	15.979	15.528	16.214	0					29	23	2	0	0	0	0.32082	1	1188	1188		3.3196	0.24738	1	69090			19856	4395	11234	11235	25013	25013					0.09300473933967623
KSFNGKQA	8	Unmodified	_KSFNGKQA_					0	0	0			REV__ENST00000528593.1_1_11:46804822-46806223:-|nuORF	REV__ENST00000528593.1_1_11:46804822-46806223:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.8863525390625	2	440.237784	878.461016	-0.23121	-0.00010179	0.48737	0.00021456	0.25615	0.00011277	440.23792312114756	13.792	0.39839	13.726	13.55	13.949	-0.066068					23	13	3	0	0	0	0.34367	1	534	534		4.3292	0.73274	1	132930	+		19857	17879	11235	11236	25014	25014					0.016923450661806783
KSFRDTRSFYL	11	Unmodified	_KSFRDTRSFYL_					0	0	0			REV__ENST00000508798.5_1_4:99392964-99393330:-|nuORF	REV__ENST00000508798.5_1_4:99392964-99393330:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.9172058105469	3	473.917493	1418.73065	0.22434	0.00010632	-0.57994	-0.00027484	-0.3556	-0.00016852	473.91722506807236	30.106	0.72021	30.106	29.833	30.553	0					79	25	4	0	0	0	0.3013	1	5456	5456		22.109	4.537	1	1006000	+		19858	21778	11236	11237	25015	25015					0.03803233891903801
KSFRDTRSFYL	11	Unmodified	_KSFRDTRSFYL_					0	0	0			REV__ENST00000508798.5_1_4:99392964-99393330:-|nuORF	REV__ENST00000508798.5_1_4:99392964-99393330:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	473.917493	1418.73065	0.22434	0.00010632	-0.57994	-0.00027484	-0.3556	-0.00016852	473.91722506807236	30.106	0.72021	30.106	29.833	30.553	0	-0.045158	-6.3681E-05	NaN	22.109	79	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1006000	+		19859	21778	11236	11237							0.03803233891903801
KSFRDTRSFYL	11	Unmodified	_KSFRDTRSFYL_					0	0	0			REV__ENST00000508798.5_1_4:99392964-99393330:-|nuORF	REV__ENST00000508798.5_1_4:99392964-99393330:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	473.917493	1418.73065	0.29276	0.00013874	-0.74434	-0.00035276	-0.45158	-0.00021401	473.91711912075584	30.135	0.76271	30.163	29.79	30.552	0.027946	0.011657	-0.00029742	NaN	22.109	90	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	953310	+		19860	21778	11236	11237							0.03803233891903801
KSFRDTRSFYL	11	Unmodified	_KSFRDTRSFYL_					0	0	0			REV__ENST00000508798.5_1_4:99392964-99393330:-|nuORF	REV__ENST00000508798.5_1_4:99392964-99393330:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	473.917493	1418.73065	-0.065065	-3.0836E-05	-0.36467	-0.00017282	-0.42974	-0.00020366	473.91730446268275	30.157	0.69205	30.185	29.838	30.53	0.027157	0.033501	0.00024237	NaN	22.109	74	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1080700	+		19861	21778	11236	11237							0.03803233891903801
KSFYYLIMRIK	11	Unmodified	_KSFYYLIMRIK_					0	0	0		nc|ENSG00000069018|Q9HCX4-2|TRPC7;TRPC7|p.N767Sfs*4|1|0.04|ENSG00000069018|chr5:136225319-136225320|-/AGTCCCATGAC|frameshift_variant;nc|ENSG00000069018|Q9HCX4-3|TRPC7;ENSG00000069018|ENST00000513104|TRPC7	nc|ENSG00000069018|Q9HCX4-2|TRPC7	nc|ENSG00000069018|Q9HCX4-2|TRPC7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.8160095214844	3	487.947736	1460.82138	-0.050523	-2.4653E-05	2.2291	0.0010877	2.1786	0.001063	488.28306705299684	28.243	0.47231	28.243	27.879	28.351	0.0004673					29	16	3	0	0	0	0.33236	1	4914	4914		0.36667	0	1	108800			19862	897	11237	11238	25016	25016					0.10939986615790076
KSGCDYHL	8	Unmodified	_KSGCDYHL_					0	0	0			REV__nc|ENSG00000203722|Q6H3X3-3|RAET1G	REV__nc|ENSG00000203722|Q6H3X3-3|RAET1G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.7082824707031	2	461.708002	921.401452	0.26392	0.00012185	-0.38236	-0.00017654	-0.11845	-5.4688E-05	461.70800859303097	70.973	1.1794	70.948	70.275	71.454	-0.024872					65	42	2	0	0	0	0.45015	1	18038	18038		5.7604	1.0044	1	599210	+		19863	18903	11238	11239	25017	25017					-0.062392939395067515
KSGLMPPYLW	10	Unmodified	_KSGLMPPYLW_					0	0	0		ENST00000475412.5_1_3:58292061-58302269:+|nuORF	ENST00000475412.5_1_3:58292061-58302269:+|nuORF	ENST00000475412.5_1_3:58292061-58302269:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.3146362304688	2	596.315177	1190.6158	0.13894	8.2851E-05	1.0703	0.00063824	1.2092	0.00072109	596.3162384717267	14.119	0.39608	14.014	13.763	14.159	-0.10466					18	13	2	0	0	0	0.40992	1	627	627		1.6526	0.32309	1	45653			19864	10931	11239	11240	25018	25018					0.028118331563973697
KSGLMPPYLW	10	Unmodified	_KSGLMPPYLW_					0	0	0		ENST00000475412.5_1_3:58292061-58302269:+|nuORF	ENST00000475412.5_1_3:58292061-58302269:+|nuORF	ENST00000475412.5_1_3:58292061-58302269:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	596.315177	1190.6158	0.14912	8.892E-05	0.72228	0.00043071	0.87139	0.00051962	596.3151550640162	13.992	0.39754	13.992	13.74	14.138	0	-0.0012863	0.00013888	NaN	1.6526	21	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52805			19865	10931	11239	11240							0.028118331563973697
KSGLMPPYLW	10	Unmodified	_KSGLMPPYLW_					0	0	0		ENST00000475412.5_1_3:58292061-58302269:+|nuORF	ENST00000475412.5_1_3:58292061-58302269:+|nuORF	ENST00000475412.5_1_3:58292061-58302269:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	596.315177	1190.6158	0.054916	3.2747E-05	0.15496	9.2403E-05	0.20987	0.00012515	596.3159383237853	14.04	0.37913	13.974	13.802	14.181	-0.066068	-0.019477	-0.00053772	NaN	1.6526	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56326			19866	10931	11239	11240							0.028118331563973697
KSGPVIAKR	9	Unmodified	_KSGPVIAKR_					0	0	0		ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4	ENSG00000109920|ENST00000263773|FNBP4	ENSG00000109920|ENST00000263773|FNBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.3059997558594	2	478.306001	954.597449	-0.17742	-8.4861E-05	0.18053	8.6348E-05	0.0031077	1.4864E-06	478.30606688548215	12.863	0.39394	12.863	12.724	13.118	0					39	13	4	0	0	0	0.0073901	1	254	254		83.429	33.496	1	340200			19867	2280	11240	11241	25019	25019					0.11833459296690307
KSGPVIAKR	9	Unmodified	_KSGPVIAKR_					0	0	0		ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4	ENSG00000109920|ENST00000263773|FNBP4	ENSG00000109920|ENST00000263773|FNBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.3060302734375	2	478.306001	954.597449	-0.069156	-3.3078E-05	0.20652	9.8782E-05	0.13737	6.5704E-05	478.30610115396706	12.903	0.39885	12.804	12.643	13.042	-0.099291					35	13	4	0	0	0	0.048637	1	269	269		53.404	19.002	1	334020			19868	2280	11240	11241	25020	25020					0.11833459296690307
KSGPVIAKR	9	Unmodified	_KSGPVIAKR_					0	0	0		ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4	ENSG00000109920|ENST00000263773|FNBP4	ENSG00000109920|ENST00000263773|FNBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.3059387207031	2	478.306001	954.597449	-0.16541	-7.9117E-05	0.12046	5.7616E-05	-0.044951	-2.1501E-05	478.3060402528405	12.904	0.43128	12.836	12.671	13.102	-0.067496					41	14	4	0	0	0	0.069258	1	265	265		45.74	16.658	1	331790			19869	2280	11240	11241	25021	25021					0.11833459296690307
KSHYFALIPR	10	Unmodified	_KSHYFALIPR_					0	0	0			REV__ENST00000468420.5_1_20:42242544-42246918:+|nuORF	REV__ENST00000468420.5_1_20:42242544-42246918:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.5291748046875	3	411.236385	1230.68733	-0.024183	-9.9448E-06	3.7028	0.0015227	3.6786	0.0015128	411.23769790117103	18.32	0.3723	18.202	17.985	18.358	-0.11739					23	12	3	0	0	0	0.32054	1	1903	1903		1.5923	0	1	54126	+		19870	14244	11241	11242	25022	25022					0.08121088905249962
KSIARVLTV	9	Unmodified	_KSIARVLTV_					0	0	0		ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF	ENSG00000136942|ENST00000348462|RPL35	ENSG00000136942|ENST00000348462|RPL35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.82147216796875	2	493.821484	985.628415	-0.090137	-4.4511E-05	0.049965	2.4674E-05	-0.040171	-1.9838E-05	493.82142247195645	34.421	0.50575	34.498	34.249	34.755	0.077381					40	17	3	0	0	0	0.13671	1	6802	6802		32.898	5.269	1	328760			19871	4017	11242	11243	25023	25023					0.13502612610932374
KSIDFPLTK	9	Unmodified	_KSIDFPLTK_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.805419921875	2	524.8055	1047.59645	0.38326	0.00020114	-0.25095	-0.0001317	0.13231	6.9436E-05	524.8052220147283	38.359	0.61657	38.359	37.98	38.597	0					53	21	3	0	0	0	0.00081117	2	7993	7946;7993		125.18	38.849	1	1075900			19872	1237	11243	11244	25024;25025	25025					0.07455200137110296
KSIDFPLTK	9	Unmodified	_KSIDFPLTK_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8053588867188	2	524.8055	1047.59645	0.5282	0.0002772	-0.49764	-0.00026116	0.03056	1.6038E-05	524.8051095270547	38.289	0.60955	38.38	38.011	38.62	0.090881					56	21	3	0	0	0	0.0042709	1	7949	7949		92.201	24.363	1	1098700			19873	1237	11243	11244	25026	25026					0.07455200137110296
KSIDFPLTK	9	Unmodified	_KSIDFPLTK_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8054809570312	2	524.8055	1047.59645	0.4846	0.00025432	-0.37321	-0.00019586	0.11139	5.8457E-05	524.8051685267948	38.225	0.61495	38.323	37.981	38.596	0.097527					56	21	3	0	0	0	0.001604	1	7924	7924		115.06	28.727	1	1053300			19874	1237	11243	11244	25027	25027					0.07455200137110296
KSIDGAYTI	9	Unmodified	_KSIDGAYTI_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1;nc|ENSG00000162692|P19320-3|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7660827636719	2	484.258382	966.502212	0.2858	0.0001384	-0.48019	-0.00023254	-0.19439	-9.4135E-05	484.25810107693434	38.507	0.48741	38.598	38.399	38.887	0.090881					30	17	2	0	0	0	0.081941	1	8041	8041		55.235	15.285	1	557540			19875	5601	11244	11245	25028	25028					0.017620613149915698
KSIDGAYTIRK	11	Unmodified	_KSIDGAYTIRK_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1;nc|ENSG00000162692|P19320-3|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.90667724609375	3	417.906705	1250.69829	-0.08148	-3.4051E-05	0.21981	9.186E-05	0.13833	5.7809E-05	417.9066844751875	21.897	0.87353	21.897	21.487	22.36	0					78	31	4	0	0	0	0.04957	1	2973	2973		53.367	38.529	1	344920			19876	5601	11245	11246	25029	25029					0.08296446488861875
KSIDGAYTIRK	11	Unmodified	_KSIDGAYTIRK_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1;nc|ENSG00000162692|P19320-3|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.9065856933594	3	417.906705	1250.69829	0.17741	7.4142E-05	0.11202	4.6816E-05	0.28944	0.00012096	417.90660432749723	21.913	0.78222	21.813	21.608	22.39	-0.10034					62	28	3	0	0	0	0.24087	1	2975	2975		27.536	17.22	1	385040			19877	5601	11245	11246	25030	25030					0.08296446488861875
KSIDGAYTIRK	11	Unmodified	_KSIDGAYTIRK_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1;nc|ENSG00000162692|P19320-3|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.90667724609375	3	417.906705	1250.69829	0.051142	2.1373E-05	0.018414	7.6954E-06	0.069556	2.9068E-05	417.906616516344	21.862	0.79499	21.813	21.548	22.343	-0.049377					72	28	4	0	0	0	0.014331	2	2965	2965;3009		63.555	48.017	1	449230			19878	5601	11245	11246	25031;25032	25031					0.08296446488861875
KSIFARLSAFV	11	Unmodified	_KSIFARLSAFV_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8695678710938	2	619.866423	1237.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.788	1	94.87	94.37	95.37	0.082779								0	0	0	0.36995	1	25294	25294		4.5289	1.7937	1		+		19879	16382	11246	11247	25033	25033					0.10894242219501393
KSIFVFTHV	9	Unmodified	_KSIFVFTHV_					0	0	0		nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7821655273438	2	539.30821	1076.60187	0.95055	0.00051264	0.19254	0.00010384	1.1431	0.00061648	539.3087768482569	50.702	0.35709	50.702	50.489	50.846	0					17	12	2	0	0	0	0.11234	1	11741	11741		36.506	17.249	1	277850			19880	5941	11247	11248	25034	25034					0.06662923719591163
KSIFVFTHV	9	Unmodified	_KSIFVFTHV_					0	0	0		nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7816772460938	2	539.30821	1076.60187	0.94421	0.00050922	1.0196	0.00054989	1.9638	0.0010591	539.3089298573892	50.633	0.35057	50.677	50.52	50.871	0.044891					19	12	2	0	0	0	0.099099	1	11740	11740		47.594	33.189	1	228180			19881	5941	11247	11248	25035	25035					0.06662923719591163
KSIFVFTHV	9	Unmodified	_KSIFVFTHV_					0	0	0		nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7820434570312	2	539.30821	1076.60187	1.0355	0.00055847	0.27624	0.00014898	1.3118	0.00070745	539.3084648019719	50.751	0.37223	50.761	50.541	50.913	0.0095634					22	13	2	0	0	0	0.20881	1	11726	11726		21.537	2.28	1	260180			19882	5941	11247	11248	25036	25036					0.06662923719591163
KSIFYNGIF	9	Unmodified	_KSIFYNGIF_					0	0	0		ENST00000474944.5_1_8:94767142-94822123:+|nuORF	ENST00000474944.5_1_8:94767142-94822123:+|nuORF	ENST00000474944.5_1_8:94767142-94822123:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7919311523438	2	544.792392	1087.57023	0.46456	0.00025309	0.39604	0.00021576	0.8606	0.00046885	544.7926620560944	68.112	2.4408	68.112	67.479	69.92	0					263	88	6	0	0	0	0.044952	1	17290	17290		54.774	2.5052	1	20208000			19883	10930	11248	11249	25037	25037					0.029949309656331025
KSIHTRAKYL	10	Unmodified	_KSIHTRAKYL_					0	0	0			REV__ENST00000568099.6_2_16:68059298-68059367:+|nuORF	REV__ENST00000568099.6_2_16:68059298-68059367:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.2433776855469	3	406.24354	1215.70879	-0.017832	-7.244E-06	-0.20843	-8.4673E-05	-0.22626	-9.1917E-05	406.24346786891	44.259	1.216	44.259	43.959	45.175	0					105	44	4	0	0	0	0.37297	1	9876	9876		8.4443	0.49891	1	3337900	+		19884	22348	11249	11250	25038	25038					0.10956473933993038
KSIQSGPLK	9	Unmodified	_KSIQSGPLK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2900390625	2	479.290017	956.565481	0.042799	2.0513E-05	0.27598	0.00013228	0.31878	0.00015279	479.2900740915551	16.307	0.56954	16.307	16.063	16.632	0					46	19	3	0	0	0	0.15763	1	1277	1277		29.841	4.8496	1	156980			19885	3619	11250	11251	25039	25039					0.08546046822903008
KSIQSGPLK	9	Unmodified	_KSIQSGPLK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2901611328125	2	479.290017	956.565481	0.042764	2.0496E-05	0.29651	0.00014212	0.33928	0.00016261	479.2900940970513	16.435	0.62078	16.321	16.047	16.667	-0.11434					48	21	3	0	0	0	0.19905	2	1299	1299;1349		23.79	4.4278	1	164310			19886	3619	11250	11251	25040;25041	25040					0.08546046822903008
KSIQSGPLK	9	Unmodified	_KSIQSGPLK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000486633.1_1_2:86400704-86422514:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.290017	956.565481	0.18822	9.0213E-05	0.14306	6.8569E-05	0.33129	0.00015878	479.29000294511314	16.359	0.63572	16.296	16.038	16.674	-0.062532	-0.011758	-9.9424E-05	NaN	29.841	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170480			19887	3619	11250	11251							0.08546046822903008
KSIRRVIWGP	10	Unmodified	_KSIRRVIWGP_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24;nc|ENSG00000138639|Q8N264-4|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3704833984375	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.34	1	114.32	113.82	114.82	-0.019096								0	0	0	0.38201	1	29695	29695		0.45834	0.45834	1				19888	4169	11251	11252	25042	25042					0.13292484033490837
KSKALRSTQ	9	Unmodified	_KSKALRSTQ_					0	0	0			REV__ENST00000443875.5_1_12:7174318-7177952:+|nuORF	REV__ENST00000443875.5_1_12:7174318-7177952:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8042907714844	2	509.803823	1017.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.16	1	115.16	114.66	115.66	0								0	0	0	0.264	1	29852	29852		1.8442	0	1		+		19889	18190	11252	11253	25043	25043					0.08499950083148633
KSKASKGSKK	10	Unmodified	_KSKASKGSKK_					0	0	0			REV__ENST00000542926.5_1_12:104373661-104376713:+|nuORF	REV__ENST00000542926.5_1_12:104373661-104376713:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.8274536132812	2	524.827298	1047.64004	0.62405	0.00032752	-0.043799	-2.2987E-05	0.58025	0.00030453	524.8271779586255	89.036	1.6087	89.036	88.514	90.123	0					258	96	6	0	0	0	0.35231	1	23539	23539		12.241	12.241	1	5632500	+		19890	15983	11253	11254	25044	25044					0.11812809634284349
KSKASKGSKK	10	Unmodified	_KSKASKGSKK_					0	0	0			REV__ENST00000542926.5_1_12:104373661-104376713:+|nuORF	REV__ENST00000542926.5_1_12:104373661-104376713:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8275146484375	2	524.827298	1047.64004	0.54052	0.00028368	0.10683	5.6068E-05	0.64735	0.00033975	524.8272533787987	88.789	1.645	88.878	88.455	90.1	0.089195					296	96	6	0	0	0	0.35231	3	23478	23478;23518;23559		12.241	12.241	1	7534600	+		19891	15983	11253	11254	25045;25046;25047	25045					0.11812809634284349
KSKASKGSKK	10	Unmodified	_KSKASKGSKK_					0	0	0			REV__ENST00000542926.5_1_12:104373661-104376713:+|nuORF	REV__ENST00000542926.5_1_12:104373661-104376713:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8274536132812	2	524.827298	1047.64004	0.59064	0.00030998	0.051362	2.6956E-05	0.642	0.00033694	524.8272387811619	88.928	1.6437	88.927	88.478	90.122	-0.00080872					302	101	6	0	0	0	0.35231	3	23464	23464;23511;23557		12.241	12.241	1	9778700	+		19892	15983	11253	11254	25048;25049;25050	25048					0.11812809634284349
KSKASKGSKK	10	Unmodified	_KSKASKGSKK_					0	0	0			REV__ENST00000542926.5_1_12:104373661-104376713:+|nuORF	REV__ENST00000542926.5_1_12:104373661-104376713:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	524.827298	1047.64004	0.54052	0.00028368	0.10683	5.6068E-05	0.64735	0.00033975	524.8272533787987	88.789	1.645	88.878	88.455	90.1	0.089195	-0.069131	6.2887E-05	NaN	12.241	296	96	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7534600	+		19893	15983	11253	11254							0.11812809634284349
KSKATRHL	8	Unmodified	_KSKATRHL_					0	0	0			REV__ENSG00000157601|ENST00000398598|MX1	REV__ENSG00000157601|ENST00000398598|MX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.29583740234375	2	470.787976	939.561398	-0.20642	-9.7181E-05	-0.012333	-5.806E-06	-0.21875	-0.00010299	470.7880655169733	13.448	0.17182	13.349	13.217	13.389	-0.099291					14	5	3	0	0	0	0.34039	1	438	438		15.847	3.3156	1	198640	+		19894	16790	11254	11255	25051	25051					0.0892000211983941
KSKATRHL	8	Unmodified	_KSKATRHL_					0	0	0			REV__ENSG00000157601|ENST00000398598|MX1	REV__ENSG00000157601|ENST00000398598|MX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2957763671875	2	470.787976	939.561398	-0.16692	-7.8582E-05	-0.11088	-5.2201E-05	-0.2778	-0.00013078	470.78799879087796	13.45	0.17045	13.383	13.245	13.416	-0.067496					11	5	3	0	0	0	0.32886	1	435	435		21.747	5.8995	1	185360	+		19895	16790	11254	11255	25052	25052					0.0892000211983941
KSKEIYTF	8	Unmodified	_KSKEIYTF_					0	0	0			REV__ENSG00000096968|ENST00000381652|JAK2	REV__ENSG00000096968|ENST00000381652|JAK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2760314941406	2	508.276575	1014.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.883	1	90.883	90.383	91.383	0								0	0	0	0.37078	1	24109	24109		5.2307	0	1		+		19896	14117	11255	11256	25053	25053					0.03190938211696448
KSKKKRQQH	9	Unmodified	_KSKKKRQQH_					0	0	0		ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3572387695312	2	584.357088	1166.69962	0.56524	0.0003303	-0.3772	-0.00022042	0.18804	0.00010988	584.3566966115507	84.274	0.24208	84.274	84.163	84.405	0					34	9	4	0	0	0	0.31038	1	22106	22106		7.2892	0.56607	1	1326700			19897	5493	11256	11257	25054	25054					0.12294125368293862
KSKKKRQQH	9	Unmodified	_KSKKKRQQH_					0	0	0		ENSG00000160818|ENST00000368232|GPATCH4;nc|ENSG00000160818|Q5T3I0-3|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	ENSG00000160818|ENST00000368232|GPATCH4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.356689453125	2	584.357088	1166.69962	0.50273	0.00029377	-0.51506	-0.00030098	-0.012331	-7.2054E-06	584.3565762588884	84.597	0.60403	84.677	84.394	84.998	0.080887					74	23	4	0	0	0	0.34536	1	22207	22207		2.0598	0.21551	1	912950			19898	5493	11256	11257	25055	25055					0.12294125368293862
KSKRFRVR	8	Unmodified	_KSKRFRVR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.818603515625	2	538.843616	1075.67268	0.11169	6.0183E-05	-0.4046	-0.00021802	-0.29291	-0.00015783	538.843442318994	13.225	0.33756	13.158	12.965	13.302	-0.067495					16	11	2	0	0	0	0.34438	1	342	342		0.6015	0	1	39432			19899	5186;12769	11257	11258	25056	25056					0.13787061547782287
KSKRGNQI	8	Unmodified	_KSKRGNQI_					0	0	0		ENSG00000006611|ENST00000005226|USH1C	ENSG00000006611|ENST00000005226|USH1C	ENSG00000006611|ENST00000005226|USH1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.77734375	2	465.777608	929.540663	-0.097384	-4.5359E-05	0.12918	6.0168E-05	0.031794	1.4809E-05	465.7775314202027	69.509	2.2575	69.509	68.616	70.873	0					165	81	3	0	0	0	0.44389	2	17588	17588;17637		7.9102	7.9102	1	522480			19900	364	11258	11259	25057;25058	25057					0.07307411740168845
KSKRGNQI	8	Unmodified	_KSKRGNQI_					0	0	0		ENSG00000006611|ENST00000005226|USH1C	ENSG00000006611|ENST00000005226|USH1C	ENSG00000006611|ENST00000005226|USH1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7772216796875	2	465.777608	929.540663	-0.038226	-1.7805E-05	0.012882	6.0002E-06	-0.025344	-1.1804E-05	465.7775179785788	69.527	2.238	69.593	68.671	70.909	0.06604					122	80	2	0	0	0	0.44389	1	17617	17617		7.9102	7.9102	1	478700			19901	364	11258	11259	25059	25059					0.07307411740168845
KSKRGNQI	8	Unmodified	_KSKRGNQI_					0	0	0		ENSG00000006611|ENST00000005226|USH1C	ENSG00000006611|ENST00000005226|USH1C	ENSG00000006611|ENST00000005226|USH1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7774658203125	2	465.777608	929.540663	0.069502	3.2372E-05	-1.2182	-0.00056741	-1.1487	-0.00053504	465.7775319258724	71.513	3.7412	71.57	70.875	74.617	0.056572					306	134	4	0	0	0	0.44389	2	18129	18129;18904		7.9102	7.9102	1	2579700			19902	364	11258	11259	25060;25061	25060					0.07307411740168845
KSKRGNQI	8	Unmodified	_KSKRGNQI_					0	0	0		ENSG00000006611|ENST00000005226|USH1C	ENSG00000006611|ENST00000005226|USH1C	ENSG00000006611|ENST00000005226|USH1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7773132324219	2	465.777608	929.540663	0.14808	6.8973E-05	-0.19059	-8.8772E-05	-0.042506	-1.9798E-05	465.7773889648621	69.509	2.264	69.487	68.595	70.859	-0.022079					157	81	3	0	0	0	0.44389	1	17589	17589		7.9102	7.9102	1	439530			19903	364	11258	11259	25062	25062					0.07307411740168845
KSKSKSRSK	9	Unmodified	_KSKSKSRSK_					0	0	0			REV__ENST00000414124.1_1_17:16520269-16520722:-|nuORF	REV__ENST00000414124.1_1_17:16520269-16520722:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3173217773438	2	518.317097	1034.61964	0.28269	0.00014652	0.11183	5.7962E-05	0.39452	0.00020449	518.3170450969914	74.204	2.9158	74.256	72.538	75.454	0.052361					235	104	4	0	0	0	0.33018	1	19008	19008		4.3292	0	1	1660300	+		19904	15215	11259	11260	25063	25063					0.10371638974447706
KSKVFYWLVI	10	Unmodified	_KSKVFYWLVI_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2569580078125	3	428.256787	1281.74853	0.1471	6.2996E-05	0.79227	0.00033929	0.93936	0.00040229	428.25681672654105	85.751	1.8648	85.742	84.497	86.362	-0.0090027					203	72	4	0	0	0	0.39536	1	22538	22538		2.086	2.086	1	945100			19905	1179	11260	11261	25064	25064					0.1189260088467563
KSKVFYWLVI	10	Unmodified	_KSKVFYWLVI_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	428.256787	1281.74853	0.069988	2.9973E-05	0.81122	0.00034741	0.88121	0.00037738	428.2568514129929	85.804	2.1871	85.889	84.593	86.781	0.084251	0.079945	-2.9383E-05	NaN	2.086	213	84	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	720040			19906	1179	11260	11261							0.1189260088467563
KSLERATQL	9	Unmodified	_KSLERATQL_					0	0	0		ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.303955078125	2	523.303655	1044.59276	0.40064	0.00020966	0.13512	7.0708E-05	0.53576	0.00028036	523.3037473346717	22.077	0.5955	22.077	21.795	22.39	0					47	21	3	0	0	0	0.043711	2	3062	3011;3062		55.235	18.728	1	261280			19907	4814	11261	11262	25065;25066	25066					0.07224530363282611
KSLERATQL	9	Unmodified	_KSLERATQL_					0	0	0		ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3037719726562	2	523.303655	1044.59276	0.40476	0.00021181	-0.031302	-1.638E-05	0.37346	0.00019543	523.303769689806	22.106	0.72744	22.006	21.744	22.471	-0.10034					56	26	3	0	0	0	0.048871	2	3041	3041;3094		53.317	11.361	1	289080			19908	4814	11261	11262	25067;25068	25067					0.07224530363282611
KSLERATQL	9	Unmodified	_KSLERATQL_					0	0	0		ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.303955078125	2	523.303655	1044.59276	0.30873	0.00016156	0.22359	0.000117	0.53232	0.00027856	523.3037208766506	22.051	0.84085	22.002	21.804	22.645	-0.049377					61	29	3	0	0	0	0.19157	1	3037	3037		24.882	9.6331	1	224350			19909	4814	11261	11262	25069	25069					0.07224530363282611
KSLITTHHL	9	Unmodified	_KSLITTHHL_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;ENST00000528411.1_1_11:85734561-85780352:-|nuORF	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3098754882812	2	525.308741	1048.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.464	1	98.525	98.025	99.025	0.061516								0	0	0	0.25631	1	26355	26355		4.3292	0.38484	1				19910	1009	11262	11263	25070	25070					0.08057138088520333
KSLKRQSAAV	10	Unmodified	_KSLKRQSAAV_					0	0	0		ENST00000528968.5_1_11:3000463-3009353:-|nuORF	ENST00000528968.5_1_11:3000463-3009353:-|nuORF	ENST00000528968.5_1_11:3000463-3009353:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3150634765625	2	544.332747	1086.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.73	1	109.72	109.22	110.22	-0.01236								0	0	0	0.36581	1	28704	28704		8.1555	0.24537	1				19911	11592	11263	11264	25071	25071					0.11108212008548435
KSLLPNFK	8	Unmodified	_KSLLPNFK_					0	0	0		ENST00000601728.1_1_19:23310047-23310578:-|nuORF	ENST00000601728.1_1_19:23310047-23310578:-|nuORF	ENST00000601728.1_1_19:23310047-23310578:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.76397705078125	2	473.789653	945.564752	0.22754	0.00010781	-0.2867	-0.00013583	-0.059159	-2.8029E-05	473.7895603529393	22.003	0.55014	21.903	21.682	22.233	-0.10034					31	19	2	0	0	0	0.34131	1	3082	3082		12.532	12.532	1	123690			19912	12260	11264	11265	25072	25072					0.08979252173833174
KSLNNIRQL	9	Unmodified	_KSLNNIRQL_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7708740234375	2	543.324922	1084.63529	0.60019	0.0003261	-0.36619	-0.00019896	0.234	0.00012714	543.3242477548592	20.772	0.26382	20.772	20.678	20.942	0					12	8	2	0	0	0	0.26188	1	2680	2680		1.6526	0	1	24310	+		19913	18559	11265	11266	25073	25073					0.09635925491488706
KSLQQQIL	8	Unmodified	_KSLQQQIL_					0	0	0			REV__POLR3B|p.E182Q|1|0.19|ENSG00000013503|chr12:106378314-106378314|G/C|missense_variant	REV__POLR3B|p.E182Q|1|0.19|ENSG00000013503|chr12:106378314-106378314|G/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2901611328125	2	479.290017	956.565481	0.042799	2.0513E-05	0.27598	0.00013228	0.31878	0.00015279	479.2900740915551	16.307	0.56954	16.307	16.063	16.632	0					46	19	3	0	0	0	0.44389	1	1324	1324		7.9102	0	1	156980	+		19914	23288	11266	11267	25074	25074					0.0854604682289164
KSLQQQIL	8	Unmodified	_KSLQQQIL_					0	0	0			REV__POLR3B|p.E182Q|1|0.19|ENSG00000013503|chr12:106378314-106378314|G/C|missense_variant	REV__POLR3B|p.E182Q|1|0.19|ENSG00000013503|chr12:106378314-106378314|G/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2900695800781	2	479.290017	956.565481	0.18822	9.0213E-05	0.14306	6.8569E-05	0.33129	0.00015878	479.29000294511314	16.359	0.63572	16.296	16.038	16.674	-0.062532					47	21	3	0	0	0	0.41758	2	1285	1285;1340		16.942	0	1	170480	+		19915	23288	11266	11267	25075;25076	25075					0.0854604682289164
KSLRALIGP	9	Unmodified	_KSLRALIGP_					0	0	0			REV__ENSG00000006695|ENST00000261643|COX10	REV__ENSG00000006695|ENST00000261643|COX10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2351379394531	2	477.808377	953.6022	0.28113	0.00013433	0.071077	3.3961E-05	0.35221	0.00016829	477.80844207538826	31.79	0.83767	31.831	31.647	32.485	0.040991					38	29	2	0	0	0	0.25706	1	6146	6146		6.7232	1.9672	1	277000	+		19916	13370	11267	11268	25077	25077					0.12354343439460536
KSLRALIGP	9	Unmodified	_KSLRALIGP_					0	0	0			REV__ENSG00000006695|ENST00000261643|COX10	REV__ENSG00000006695|ENST00000261643|COX10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	477.808377	953.6022	0.31608	0.00015102	-0.011191	-5.3469E-06	0.30489	0.00014568	477.80844430554384	31.814	0.42878	31.856	31.624	32.053	0.042364	0.012803	-3.6097E-05	NaN	6.7232	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406570	+		19917	13370	11267	11268							0.12354343439460536
KSLSPLSRSS	10	Unmodified	_KSLSPLSRSS_					0	0	0			REV__ENST00000329043.7_1_4:47901091-47901409:-|nuORF	REV__ENST00000329043.7_1_4:47901091-47901409:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3141479492188	2	531.301113	1060.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.381	1	91.381	90.881	91.881	0								0	0	0	0.3726	1	24263	24263		5.2969	0	1		+		19918	20024	11268	11269	25078	25078					0.059802265006510424
KSLSVVTEV	9	Unmodified	_KSLSVVTEV_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;nc|ENSG00000053900|Q9UJX5-2|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7689208984375	2	481.281857	960.549162	0.22746	0.00010947	-0.39511	-0.00019016	-0.16764	-8.0684E-05	481.2816138201974	40.16	0.82792	40.16	39.886	40.714	0					55	29	3	0	0	0	0.01909	1	8537	8537		65.474	28.967	1	512250			19919	681	11269	11270	25079	25079					0.06730920866152701
KSLSVVTEV	9	Unmodified	_KSLSVVTEV_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;nc|ENSG00000053900|Q9UJX5-2|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.76898193359375	2	481.281857	960.549162	0.47196	0.00022715	-0.69832	-0.00033609	-0.22636	-0.00010894	481.2814526498431	40.031	0.72755	40.124	39.858	40.585	0.09267					43	25	3	0	0	0	0.048637	2	8490	8490;8526		53.404	22.767	1	535580			19920	681	11269	11270	25080;25081	25080					0.06730920866152701
KSLSVVTEV	9	Unmodified	_KSLSVVTEV_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;nc|ENSG00000053900|Q9UJX5-2|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7689208984375	2	481.281857	960.549162	0.34775	0.00016737	-0.68364	-0.00032902	-0.33589	-0.00016166	481.2815023420064	39.98	0.63523	40.079	39.844	40.479	0.099407					45	22	3	0	0	0	0.086462	2	8466	8466;8517		40.239	17.503	1	575680			19921	681	11269	11270	25082;25083	25082					0.06730920866152701
KSLTGTLYL	9	Unmodified	_KSLTGTLYL_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.292236328125	2	498.292225	994.569897	0.35134	0.00017507	-0.25355	-0.00012634	0.097788	4.8727E-05	498.2919787070391	51.865	0.70446	51.865	51.592	52.296	0					47	25	2	0	0	0	0.03069	1	12158	12158		60.074	22.1	1	1008500			19922	4239	11270	11271	25084	25084					0.07239511245791164
KSLTGTLYL	9	Unmodified	_KSLTGTLYL_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2919921875	2	498.292225	994.569897	0.40399	0.0002013	-0.29804	-0.00014851	0.10595	5.2793E-05	498.29190122984596	51.813	0.68399	51.86	51.622	52.306	0.046974					50	24	3	0	0	0	0.05341	1	12131	12131		51.63	20.993	1	1234000			19923	4239	11270	11271	25085	25085					0.07239511245791164
KSLTGTLYL	9	Unmodified	_KSLTGTLYL_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.2922058105469	2	498.292225	994.569897	0.14716	7.3327E-05	0.16485	8.2141E-05	0.312	0.00015547	498.2920765760038	51.967	0.75732	51.966	51.683	52.44	-0.00080872					69	27	3	0	0	0	0.074552	1	12171	12171		43.772	13.136	1	1014300			19924	4239	11270	11271	25086	25086					0.07239511245791164
KSLTGTLYL	9	Unmodified	_KSLTGTLYL_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	498.292225	994.569897	0.40399	0.0002013	-0.29804	-0.00014851	0.10595	5.2793E-05	498.29190122984596	51.813	0.68399	51.86	51.622	52.306	0.046974	-0.037489	-0.00015556	NaN	60.074	50	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1234000			19925	4239	11270	11271							0.07239511245791164
KSLTGTLYL	9	Unmodified	_KSLTGTLYL_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.292225	994.569897	0.14716	7.3327E-05	0.16485	8.2141E-05	0.312	0.00015547	498.2920765760038	51.967	0.75732	51.966	51.683	52.44	-0.00080872	0.069233	0.00030574	NaN	60.074	69	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1014300			19926	4239	11270	11271							0.07239511245791164
KSLTTAIIK	9	Unmodified	_KSLTTAIIK_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.30291748046875	2	487.815867	973.617182	0.32485	0.00015847	-0.76594	-0.00037364	-0.44109	-0.00021517	487.81534114689134	29.635	0.50022	29.647	29.417	29.917	0.012264					23	16	2	0	0	0	0.25714	1	5351	5351		15.248	1.3424	1	85158	+		19927	18736	11271	11272	25087	25087					0.12931790516790898
KSLTTAIIK	9	Unmodified	_KSLTTAIIK_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.3027648925781	2	487.815867	973.617182	0.074428	3.6307E-05	-0.35454	-0.00017295	-0.28012	-0.00013664	487.81554398762324	29.678	0.6411	29.691	29.454	30.095	0.013475					28	21	2	0	0	0	0.25714	1	5353	5353		15.248	2.7169	1	100850	+		19928	18736	11271	11272	25088	25088					0.12931790516790898
KSLTTAIIK	9	Unmodified	_KSLTTAIIK_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	487.815867	973.617182	0.32485	0.00015847	-0.76594	-0.00037364	-0.44109	-0.00021517	487.81534114689134	29.635	0.50022	29.647	29.417	29.917	0.012264	-0.022106	-0.00018714	NaN	15.248	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85158	+		19929	18736	11271	11272							0.12931790516790898
KSLTTAIIK	9	Unmodified	_KSLTTAIIK_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	487.815867	973.617182	0.074428	3.6307E-05	-0.35454	-0.00017295	-0.28012	-0.00013664	487.81554398762324	29.678	0.6411	29.691	29.454	30.095	0.013475	0.022106	0.00021423	NaN	15.248	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100850	+		19930	18736	11271	11272							0.12931790516790898
KSLVAILHL	9	Unmodified	_KSLVAILHL_					0	0	0		ENST00000533345.5_1_11:12419899-12534890:+|nuORF;ENSG00000197702|ENST00000334956|PARVA	ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENST00000533345.5_1_11:12419899-12534890:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7675476074219	2	497.326402	992.638252	0.41832	0.00020804	-0.37487	-0.00018644	0.043445	2.1606E-05	497.3259807528935	57.641	0.34914	57.727	57.571	57.92	0.085621					15	12	2	0	0	0	0.22061	1	13935	13935		24.021	10.115	1	204000			19931	7990	11272	11273	25089	25089					0.14163800616313438
KSLVRLLLL	9	Unmodified	_KSLVRLLLL_					0	0	0		ENSG00000129538|ENST00000397967|RNASE1	ENSG00000129538|ENST00000397967|RNASE1	ENSG00000129538|ENST00000397967|RNASE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.8713989257812	2	527.870977	1053.7274	0.57721	0.00030469	-0.02893	-1.5271E-05	0.54828	0.00028942	527.8708709354952	62.431	1.0023	62.431	62.115	63.117	0					96	37	4	0	0	0	0.026579	2	15418	15369;15418		61.602	30.965	1	1971100			19932	3431	11273	11274	25090;25091	25091					0.20268635575848748
KSLVRLLLL	9	Unmodified	_KSLVRLLLL_					0	0	0		ENSG00000129538|ENST00000397967|RNASE1	ENSG00000129538|ENST00000397967|RNASE1	ENSG00000129538|ENST00000397967|RNASE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.8711547851562	2	527.870977	1053.7274	0.48455	0.00025578	0.0025578	1.3502E-06	0.4871	0.00025713	527.8709008985064	62.326	0.80888	62.423	62.149	62.958	0.096989					78	29	4	0	0	0	0.026579	2	15335	15335;15385		61.602	25.475	1	2274200			19933	3431	11273	11274	25092;25093	25092					0.20268635575848748
KSLVRLLLL	9	Unmodified	_KSLVRLLLL_					0	0	0		ENSG00000129538|ENST00000397967|RNASE1	ENSG00000129538|ENST00000397967|RNASE1	ENSG00000129538|ENST00000397967|RNASE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.87109375	2	527.870977	1053.7274	0.55396	0.00029242	-0.097602	-5.1521E-05	0.45635	0.0002409	527.8708273745342	62.402	0.90925	62.393	62.142	63.051	-0.0085564					87	33	4	0	0	0	0.026579	2	15404	15358;15404		61.602	25.475	1	1856000			19934	3431	11273	11274	25094;25095	25095					0.20268635575848748
KSLYCEFMK	9	Unmodified	_KSLYCEFMK_					0	0	0			REV__ENSG00000121741|ENST00000610343|ZMYM2	REV__ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.775634765625	2	574.77757	1147.54059	0.14256	8.1941E-05	-2.3607	-0.0013569	-2.2182	-0.001275	574.7758125082331	24.26	0.54606	24.26	24.029	24.575	0					31	18	2	0	0	0	0.31164	1	3731	3731		7.1017	0.37856	1	149960	+		19935	15129	11274	11275	25096	25096					-0.027280923663511203
KSLYMVMSLK	10	Unmodified	_KSLYMVMSLK_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.8510131835938	2	600.32997	1198.64539	0.51627	0.00030993	0.64935	0.00038983	1.1656	0.00069976	600.3301895270122	44.258	1.1648	44.258	43.904	45.069	0					76	42	3	0	0	0	0.24105	1	9883	9883		27.629	11.782	1	2391700	+		19936	22992	11275	11276	25097	25097					0.05401029110203126
KSLYMVMSLK	10	Unmodified	_KSLYMVMSLK_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8511352539062	2	600.32997	1198.64539	0.36985	0.00022203	0.96297	0.0005781	1.3328	0.00080013	600.3303713116406	43.919	0.99611	44.003	43.736	44.732	0.083992					74	36	3	0	0	0	0.24105	1	9786	9786		27.629	11.782	1	2506900	+		19937	22992	11275	11276	25098	25098					0.05401029110203126
KSLYNQRLR	9	Unmodified	_KSLYNQRLR_					0	0	0		ENSG00000183628|ENST00000331444|DGCR6;nc|ENSG00000183628|Q14129-2|DGCR6;ENSG00000128185|ENST00000248879|DGCR6L	ENSG00000183628|ENST00000331444|DGCR6	ENSG00000183628|ENST00000331444|DGCR6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3439331054688	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.09	1	118.12	117.62	118.62	0.023476								0	0	0	0.26734	1	30591	30591		0.45834	0	1				19938	7383	11276	11277	25099	25099					0.09147016757128767
KSMRTWSGA	9	Unmodified	_KSMRTWSGA_					0	0	0		ENST00000551271.5_1_14:105884588-105885396:-|nuORF	ENST00000551271.5_1_14:105884588-105885396:-|nuORF	ENST00000551271.5_1_14:105884588-105885396:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2556762695312	2	512.255651	1022.49675	0.47985	0.00024581	0.33591	0.00017207	0.81576	0.00041788	512.2557120484075	41.551	1.4603	41.648	41.177	42.638	0.096626					149	55	4	0	0	0	0.33911	1	9024	9024		2.9952	0.41776	1	14181000			19939	11804	11277	11278	25100	25100					-0.013599407484548465
KSNQIPTEV	9	Unmodified	_KSNQIPTEV_					0	0	0		ENST00000471528.1_1_X:154275627-154282944:+|nuORF;ENST00000456179.1_1_X:154261825-154282944:+|nuORF;ENST00000484175.5_1_X:154255538-154282944:+|nuORF;ENSG00000165775|ENST00000369498|FUNDC2	ENST00000471528.1_1_X:154275627-154282944:+|nuORF	ENST00000471528.1_1_X:154275627-154282944:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2835998535156	2	508.274564	1014.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.553	1	30.553	30.053	31.053	0								0	0	0	0.16485	1	5605	5605		31.268	5.869	1				19940	5999	11278	11279	25101	25101					0.027888487179893673
KSNWLHERFIK	11	Unmodified	_KSNWLHERFIK_					0	0	0			REV__nc|ENSG00000204403|Q6UXS9-2|CASP12	REV__nc|ENSG00000204403|Q6UXS9-2|CASP12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2634582519531	3	486.605249	1456.79392	0.3327	0.00016189	1.8634	0.00090673	2.1961	0.0010686	486.6062785223901	44.885	0.43876	44.954	44.765	45.204	0.068569					18	15	2	0	0	0	0.33236	1	9963	9963		2.4348	0	1	227010	+		19941	23169	11279	11280	25102	25102					0.08379219399762405
KSNYYSFI	8	Unmodified	_KSNYYSFI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2527160644531	2	511.2531	1020.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.569	1	86.56	86.06	87.06	-0.0090027								0	0	0	0.36486	1	22773	22773		7.9102	2.6795	1				19942	837	11280	11281	25103	25103					-0.01777921339430577
KSPATGPKVGS	11	Unmodified	_KSPATGPKVGS_					0	0	0			REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3299560546875	2	514.790381	1027.56621	0.038431	1.9784E-05	1.7403	0.00089588	1.7787	0.00091566	514.7911893998332	16.259	0.38293	16.145	15.921	16.304	-0.11434					20	12	2	0	0	0	0.33218	1	1231	1231		4.1895	0.59301	1	59942	+		19943	22888	11281	11282	25104	25104					0.05352841471949432
KSPATGPKVGS	11	Unmodified	_KSPATGPKVGS_					0	0	0			REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	514.790381	1027.56621	0.15627	8.0449E-05	1.5891	0.00081805	1.7454	0.0008985	514.7912466063053	16.084	0.32047	16.084	15.947	16.267	0	-0.011911	0.0001236	NaN	4.1895	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57532	+		19944	22888	11281	11282							0.05352841471949432
KSPATGPKVGS	11	Unmodified	_KSPATGPKVGS_					0	0	0			REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	514.790381	1027.56621	0.077464	3.9878E-05	1.2517	0.00064434	1.3291	0.00068422	514.7909832977241	16.123	0.3182	16.06	15.917	16.235	-0.062534	-0.036263	-0.00022382	NaN	4.1895	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63296	+		19945	22888	11281	11282							0.05352841471949432
KSPHIQEIL	9	Unmodified	_KSPHIQEIL_					0	0	0			REV__PPP6R1|p.H392Mfs*11|1|0.38|ENSG00000105063|chr19:55241065-55241068|ATGG/-|frameshift_variant	REV__PPP6R1|p.H392Mfs*11|1|0.38|ENSG00000105063|chr19:55241065-55241068|ATGG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3004150390625	2	532.808574	1063.60259	0.59729	0.00031824	-0.27605	-0.00014708	0.32124	0.00017116	532.8081619623836	56.92	0.66187	56.92	56.528	57.19	0					57	24	3	0	0	0	0.18936	1	13656	13656		26.268	2.2476	1	1282700	+		19946	14434	11282	11283	25105	25105					0.07333718368658992
KSPQKKSR	8	Unmodified	_KSPQKKSR_					0	0	0		ENST00000326669.5_1_6:149721504-149721585:+|nuORF	ENST00000326669.5_1_6:149721504-149721585:+|nuORF	ENST00000326669.5_1_6:149721504-149721585:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.214599609375	2	479.793258	957.571963	0.093517	4.4869E-05	0.41504	0.00019913	0.50855	0.000244	479.79317667507354	27.334	0.51301	27.322	27.014	27.527	-0.01156					39	17	4	0	0	0	0.34226	1	4673	4673		6.2058	2.2614	1	111280			19947	9417	11283	11284	25106	25106					0.09147984774278939
KSPSVHQP	8	Unmodified	_KSPSVHQP_					0	0	0			REV__ENSG00000172009|ENST00000307741|THOP1	REV__ENSG00000172009|ENST00000307741|THOP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.8862609863281	2	440.237784	878.461016	-0.28858	-0.00012704	0.54446	0.00023969	0.25588	0.00011265	440.2378986491507	13.803	0.53609	13.698	13.487	14.023	-0.10466					29	18	2	0	0	0	0.34388	1	531	531		3.5965	0	1	114030	+		19948	17685	11284	11285	25107	25107					0.01692345066192047
KSQDKTLKI	9	Unmodified	_KSQDKTLKI_					0	0	0		nc|ENSG00000074416|Q99685-2|MGLL;nc|ENSG00000074416|Q99685|MGLL;ENSG00000074416|ENST00000265052|MGLL	nc|ENSG00000074416|Q99685-2|MGLL	nc|ENSG00000074416|Q99685-2|MGLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.8217163085938	2	530.821681	1059.62881	0.33285	0.00017668	-0.2406	-0.00012772	0.092249	4.8968E-05	530.8215626527674	16.076	0.59424	16.076	15.867	16.461	0					31	20	2	0	0	0	0.11813	1	1207	1207		35.612	16.25	1	221700			19949	1021	11285	11286	25108	25108					0.10137987540133508
KSQDKTLKI	9	Unmodified	_KSQDKTLKI_					0	0	0		nc|ENSG00000074416|Q99685-2|MGLL;nc|ENSG00000074416|Q99685|MGLL;ENSG00000074416|ENST00000265052|MGLL	nc|ENSG00000074416|Q99685-2|MGLL	nc|ENSG00000074416|Q99685-2|MGLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.82177734375	2	530.821681	1059.62881	0.17971	9.5392E-05	0.062229	3.3033E-05	0.24194	0.00012842	530.8216052812467	16.16	0.55516	16.045	15.866	16.421	-0.11434					33	18	2	0	0	0	0.07848	2	1245	1245;1291		42.312	11.044	1	200690			19950	1021	11285	11286	25109;25110	25109					0.10137987540133508
KSQDKTLKI	9	Unmodified	_KSQDKTLKI_					0	0	0		nc|ENSG00000074416|Q99685-2|MGLL;nc|ENSG00000074416|Q99685|MGLL;ENSG00000074416|ENST00000265052|MGLL	nc|ENSG00000074416|Q99685-2|MGLL	nc|ENSG00000074416|Q99685-2|MGLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.82177734375	2	530.821681	1059.62881	0.3566	0.00018929	-0.08296	-4.4037E-05	0.27364	0.00014525	530.8216121230525	16.117	0.60426	16.054	15.838	16.442	-0.062534					30	20	2	0	0	0	0.086462	1	1225	1225		40.239	10.399	1	225180			19951	1021	11285	11286	25111	25111					0.10137987540133508
KSQELQAK	8	Unmodified	_KSQELQAK_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.75384521484375	2	466.263999	930.513445	-0.0082498	-3.8466E-06	-1.5065	-0.00070242	-1.5147	-0.00070627	466.2638368063907	22.463	0.72271	22.418	22.124	22.847	-0.044867					53	24	3	0	0	0	0.34131	1	3069	3069		7.9102	0	1	126700	+		19952	13721	11286	11287	25112	25112					0.04540883409140406
KSQQALVQK	9	Unmodified	_KSQQALVQK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB;ENST00000567372.1_1_18:65945123-65945423:-|nuORF	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7596435546875	2	515.306198	1028.59784	-0.0042188	-2.174E-06	-0.98204	-0.00050605	-0.98626	-0.00050823	515.3055607280808	13.497	0.70527	13.497	13.227	13.932	0					51	24	3	0	0	0	0.075356	1	435	435		63.961	20.102	1	529720			19953	2725	11287	11288	25113	25113					0.08468834225891442
KSQQALVQK	9	Unmodified	_KSQQALVQK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB;ENST00000567372.1_1_18:65945123-65945423:-|nuORF	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.759521484375	2	515.306198	1028.59784	-0.11525	-5.9389E-05	-0.51315	-0.00026443	-0.6284	-0.00032382	515.3058683580293	13.554	0.83625	13.454	13.16	13.997	-0.09929					62	29	4	0	0	0	0.0073667	1	458	458		96.367	25.233	1	524230			19954	2725	11287	11288	25114	25114					0.08468834225891442
KSQQALVQK	9	Unmodified	_KSQQALVQK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB;ENST00000567372.1_1_18:65945123-65945423:-|nuORF	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7595825195312	2	515.306198	1028.59784	-0.17597	-9.0681E-05	-0.54255	-0.00027958	-0.71852	-0.00037026	515.3057910569353	13.564	0.61376	13.497	13.215	13.829	-0.067495					46	21	4	0	0	0	0.0045335	1	455	455		106.94	45.583	1	459030			19955	2725	11287	11288	25115	25115					0.08468834225891442
KSQTSFLPA	9	Unmodified	_KSQTSFLPA_					0	0	0			REV__ENST00000457013.6_1_19:53456123-53466148:-|nuORF	REV__ENST00000457013.6_1_19:53456123-53466148:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.7539367675781	2	489.766374	977.518196	0.17536	8.5886E-05	-3.8352	-0.0018784	-3.6598	-0.0017925	489.7643387660503	22.797	0.29028	22.753	22.583	22.873	-0.044867					11	9	2	0	0	0	0.28128	1	3251	3251		11.64	0.81637	1	29103	+		19956	21177	11288	11289	25116	25116					0.02853767551891906
KSQTSFLPA	9	Unmodified	_KSQTSFLPA_					0	0	0			REV__ENST00000457013.6_1_19:53456123-53466148:-|nuORF	REV__ENST00000457013.6_1_19:53456123-53466148:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	489.766374	977.518196	0.10162	4.9769E-05	-4.6747	-0.0022895	-4.5731	-0.0022398	489.76390940279833	22.773	0.13364	22.686	22.628	22.762	-0.087608	-0.033356	-0.00040233	NaN	11.64	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23807	+		19957	21177	11288	11289							0.02853767551891906
KSQTSFLPA	9	Unmodified	_KSQTSFLPA_					0	0	0			REV__ENST00000457013.6_1_19:53456123-53466148:-|nuORF	REV__ENST00000457013.6_1_19:53456123-53466148:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	489.766374	977.518196	0.17536	8.5886E-05	-3.8352	-0.0018784	-3.6598	-0.0017925	489.7643387660503	22.797	0.29028	22.753	22.583	22.873	-0.044867	0.033356	0.00042001	NaN	11.64	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29103	+		19958	21177	11288	11289							0.02853767551891906
KSQVFPLSL	9	Unmodified	_KSQVFPLSL_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8058776855469	2	509.800217	1017.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.888	1	61.888	61.388	62.388	0								0	0	0	0.047655	1	15235	15235		61.602	10.747	1				19959	307	11289	11290	25117	25117					0.07779217482709555
KSQVFPLSL	9	Unmodified	_KSQVFPLSL_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8059387207031	2	509.800217	1017.58588	-0.13419	-6.8409E-05	-4.1308	-0.0021059	-4.265	-0.0021743	510.29851358499184	61.729	0.84826	61.826	61.566	62.414	0.096985					59	30	3	0	0	0	0.014206	1	15210	15210		72.968	9.0074	1	1139800			19960	307	11289	11290	25118	25118					0.07779217482709555
KSQVFPLSL	9	Unmodified	_KSQVFPLSL_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8057556152344	2	509.800217	1017.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.895	1	61.886	61.386	62.386	-0.0085526								0	0	0	0.074952	1	15227	15227		53.404	5.8096	1				19961	307	11289	11290	25119	25119					0.07779217482709555
KSRKRQEPPL	10	Unmodified	_KSRKRQEPPL_					0	0	0			REV__ENSG00000143375|ENST00000271636|CGN	REV__ENSG00000143375|ENST00000271636|CGN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8692626953125	2	619.870028	1237.7255	-0.018719	-1.1603E-05	0.060523	3.7516E-05	0.041804	2.5913E-05	619.8691569591535	96.085	0.7596	96.163	95.962	96.722	0.077415					109	72	2	0	0	0	0.40262	2	25784	25748;25784		2.9952	0.49676	1	188500	+		19962	16170	11290	11291	25120;25121	25121					0.11614974819940471
KSRKRQEPPL	10	Unmodified	_KSRKRQEPPL_					0	0	0			REV__ENSG00000143375|ENST00000271636|CGN	REV__ENSG00000143375|ENST00000271636|CGN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.86962890625	2	619.870028	1237.7255	0.29543	0.00018313	-0.1832	-0.00011356	0.11223	6.9568E-05	619.8690396100932	94.564	1.5426	94.562	93.798	95.341	-0.0020142					222	130	2	0	0	0	0.40106	1	25308	25308		3.2813	0.54611	1	200390	+		19963	16170	11290	11291	25122	25122					0.11614974819940471
KSRKRQEPPL	10	Unmodified	_KSRKRQEPPL_					0	0	0			REV__ENSG00000143375|ENST00000271636|CGN	REV__ENSG00000143375|ENST00000271636|CGN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8693237304688	2	619.870028	1237.7255	0.20348	0.00012613	-0.46722	-0.00028961	-0.26374	-0.00016348	619.8692710448544	97.491	1.1283	97.485	96.973	98.101	-0.0055466					232	118	3	0	0	0	0.38773	1	26102	26102		5.7319	5.7319	1	379940	+		19964	16170	11290	11291	25123	25123					0.11614974819940471
KSRKTKPEEI	10	Unmodified	_KSRKTKPEEI_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.5258483886719	3	405.906705	1214.69829	-0.19366	-7.8608E-05	1.1786	0.00047842	0.98499	0.00039981	405.9071229512379	18.103	0.36888	18.103	17.93	18.299	0					18	12	2	0	0	0	0.32143	1	1874	1874		1.5923	0	1	20412			19965	6498	11291	11292	25124	25124					0.09952446488910027
KSRKTKPEEI	10	Unmodified	_KSRKTKPEEI_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.906705	1214.69829	-0.34151	-0.00013862	1.4882	0.00060408	1.1467	0.00046546	405.90712159587486	18.339	0.37161	18.281	18.031	18.402	-0.058174	0.088937	0.00021626	NaN	1.5923	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26629			19966	6498	11291	11292							0.09952446488910027
KSRPKPLTRSI	11	Unmodified	_KSRPKPLTRSI_					0	0	0			REV__ENSG00000250423|ENST00000691062|KIAA1210	REV__ENSG00000250423|ENST00000691062|KIAA1210	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.9008178710938	2	641.901328	1281.7881	-0.017688	-1.1354E-05	0.62269	0.00039971	0.605	0.00038835	641.9008072850362	104.59	0.61302	104.59	104.3	104.91	0					140	84	2	0	0	0	0.47649	1	27813	27813		1.1933	0	1	252940	+		19967	19216	11292	11293	25125	25125					0.15848120888108497
KSRPTSPK	8	Unmodified	_KSRPTSPK_					0	0	0			REV__ENST00000521088.1_1_8:62115470-62115605:+|nuORF	REV__ENST00000521088.1_1_8:62115470-62115605:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2265625	2	450.766709	899.518865	-0.034347	-1.5482E-05	-0.66318	-0.00029894	-0.69753	-0.00031442	450.766245106487	15.903	0.60848	15.79	15.343	15.952	-0.11294					23	20	2	0	0	0	0.34378	1	1148	1148		3.9444	3.9444	1	34192	+		19968	20686	11293	11294	25126	25126					0.06508606991610577
KSRWKNLKT	9	Unmodified	_KSRWKNLKT_					0	0	0		ENST00000367033.3_1_1:208417261-208417633:-|nuORF	ENST00000367033.3_1_1:208417261-208417633:-|nuORF	ENST00000367033.3_1_1:208417261-208417633:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.7882080078125	2	580.848564	1159.68258	0.12476	7.2464E-05	-0.21011	-0.00012204	-0.08535	-4.9576E-05	580.8484200869597	26.12	0.38533	26.081	25.931	26.316	-0.038671					19	13	2	0	0	0	0.26031	1	4292	4292		3.5965	0	1	54250			19969	9720	11294	11295	25127	25127					0.10912204762485089
KSSEKMGGTFL	11	Unmodified	_KSSEKMGGTFL_					0	0	0			REV__nc|ENSG00000197429|Q9Y573-2|IPP	REV__nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.8020629882812	2	592.802631	1183.59071	0.36337	0.00021541	-0.38669	-0.00022923	-0.023323	-1.3826E-05	592.8022604584721	74.115	2.4996	74.167	73.008	75.508	0.052368					233	89	3	0	0	0	0.35271	1	19105	19105		17.443	17.443	1	1313800	+		19970	18735	11295	11296	25128	25128					0.00625733563151698
KSSHLPTEV	9	Unmodified	_KSSHLPTEV_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7906188964844	2	499.269281	996.52401	0.24708	0.00012336	-0.58339	-0.00029127	-0.33631	-0.00016791	499.2686982891842	22.32	0.28647	22.32	22.133	22.42	0					15	9	2	0	0	0	0.25843	1	3104	3104		5.7319	1.4026	1	42807			19971	3583	11296	11297	25129	25129					0.025608660635725755
KSSKRELK	8	Unmodified	_KSSKRELK_					0	0	0			REV__nc|ENSG00000198825|Q9Y2H2-4|INPP5F	REV__nc|ENSG00000198825|Q9Y2H2-4|INPP5F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7999572753906	2	488.300916	974.587279	0.43917	0.00021445	0.89515	0.0004371	1.3343	0.00065155	488.3013262990334	87.22	0.67421	87.215	86.747	87.421	-0.0056229					42	28	2	0	0	0	0.34272	1	23020	23020		1.8442	0	1	160280	+		19972	18869	11297	11298	25130	25130					0.09896851571465959
KSSLLEEAEGH	11	Unmodified	_KSSLLEEAEGH_					0	0	0		nc|ENSG00000153820|Q2M3C7-2|SPHKAP;ENSG00000153820|ENST00000392056|SPHKAP	nc|ENSG00000153820|Q2M3C7-2|SPHKAP	nc|ENSG00000153820|Q2M3C7-2|SPHKAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.29931640625	2	600.298767	1198.58298	0.63864	0.00038338	-0.61012	-0.00036625	0.028524	1.7123E-05	600.2987725215963	21.553	1.4698	21.452	20.789	22.259	-0.10034					130	52	5	0	0	0	0.42762	1	2931	2931		7.609	1.4032	1	1548800			19973	5087	11298	11299	25131	25131					-0.008367024327753825
KSSPGTWFEI	10	Unmodified	_KSSPGTWFEI_					0	0	0		ENSG00000213462|ENST00000394323|ERV3-1	ENSG00000213462|ENST00000394323|ERV3-1	ENSG00000213462|ENST00000394323|ERV3-1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.29345703125	2	576.290214	1150.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.15	1	114.17	113.67	114.67	0.016708								0	0	0	0.37044	1	29692	29692		6.2058	0.97511	1				19974	8345	11299	11300	25132	25132					-0.0033857824791994062
KSSTRAVLL	9	Unmodified	_KSSTRAVLL_					0	0	0		ENST00000525647.1_1_11:118133556-118134958:-|nuORF;ENST00000527282.1_1_11:118133507-118134958:-|nuORF;ENSG00000149573|ENST00000278937|MPZL2;ENST00000529376.5_1_11:118130767-118134958:-|nuORF	ENST00000525647.1_1_11:118133556-118134958:-|nuORF	ENST00000525647.1_1_11:118133556-118134958:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.80328369140625	2	487.803291	973.59203	0.29696	0.00014486	-0.32719	-0.0001596	-0.030229	-1.4746E-05	487.8030727103826	24.406	0.52647	24.333	24.085	24.612	-0.072559					28	17	2	0	0	0	0.22215	1	3753	3753		20.415	0	1	117030			19975	4878	11300	11301	25133	25133					0.10417735714224818
KSSTRAVLL	9	Unmodified	_KSSTRAVLL_					0	0	0		ENST00000525647.1_1_11:118133556-118134958:-|nuORF;ENST00000527282.1_1_11:118133507-118134958:-|nuORF;ENSG00000149573|ENST00000278937|MPZL2;ENST00000529376.5_1_11:118130767-118134958:-|nuORF	ENST00000525647.1_1_11:118133556-118134958:-|nuORF	ENST00000525647.1_1_11:118133556-118134958:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	487.803291	973.59203	0.29696	0.00014486	-0.32719	-0.0001596	-0.030229	-1.4746E-05	487.8030727103826	24.406	0.52647	24.333	24.085	24.612	-0.072559	0.0034886	-6.0608E-05	NaN	20.415	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117030			19976	4878	11300	11301							0.10417735714224818
KSTAISLFY	9	Unmodified	_KSTAISLFY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.284423828125	2	515.2844	1028.55425	0.69335	0.00035727	-0.37602	-0.00019376	0.31733	0.00016351	515.2840853310362	56.443	0.47552	56.443	56.158	56.633	0					34	17	2	0	0	0	0.20679	1	13576	13576		22.658	1.1211	1	1295900			19977	6196	11301	11302	25134	25134					0.04111224728740126
KSTAISLFY	9	Unmodified	_KSTAISLFY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2847900390625	2	515.2844	1028.55425	0.73727	0.00037991	-0.44205	-0.00022778	0.29522	0.00015212	515.2840301687643	56.296	0.60009	56.375	56.028	56.628	0.078674					41	21	3	0	0	0	0.19208	1	13505	13505		33.445	24.699	1	1571600			19978	6196	11301	11302	25135	25135					0.04111224728740126
KSTAISLFY	9	Unmodified	_KSTAISLFY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	515.2844	1028.55425	0.69335	0.00035727	-0.37602	-0.00019376	0.31733	0.00016351	515.2840853310362	56.443	0.47552	56.443	56.158	56.633	0	0.0014237	6.098E-05	NaN	33.445	34	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1295900			19979	6196	11301	11302							0.04111224728740126
KSTAISLFY	9	Unmodified	_KSTAISLFY_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	515.2844	1028.55425	0.90551	0.0004666	-0.47873	-0.00024668	0.42679	0.00021992	515.2840484774844	56.527	0.43369	56.507	56.267	56.7	-0.019077	0.06556	-4.4865E-05	NaN	33.445	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1345800			19980	6196	11301	11302							0.04111224728740126
KSTEEAFEVF	10	Unmodified	_KSTEEAFEVF_					0	0	0		ENST00000559456.1_1_15:69718424-69718523:+|nuORF;nc|ENSG00000137807|Q02241-3|KIF23;nc|ENSG00000137807|Q02241-2|KIF23;KIF23|p.Q891Lfs*7|1|0.04|ENSG00000137807|chr15:69446048-69446049|-/TCATGATTCT|frameshift_variant;nc|ENSG00000137807|Q02241|KIF23;ENSG00000137807|ENST00000679126|KIF23	ENST00000559456.1_1_15:69718424-69718523:+|nuORF	ENST00000559456.1_1_15:69718424-69718523:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7858276367188	2	593.784961	1185.55537	0.50009	0.00029694	0.13732	8.1539E-05	0.63741	0.00037848	593.7852071606184	82.233	2.4344	82.209	81.395	83.829	-0.02404					307	100	6	0	0	0	0.38773	1	21710	21710		5.7319	0.97584	1	964350			19981	4076	11302	11303	25136	25136					-0.029986056930056293
KSTKERLL	8	Unmodified	_KSTKERLL_					0	0	0		nc|ENSG00000064886|Q15782-6|CHI3L2;ENSG00000064886|ENST00000369748|CHI3L2;nc|ENSG00000064886|Q15782-5|CHI3L2	nc|ENSG00000064886|Q15782-6|CHI3L2	nc|ENSG00000064886|Q15782-6|CHI3L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.8033142089844	2	487.803291	973.59203	0.20323	9.9137E-05	-0.33499	-0.00016341	-0.13175	-6.427E-05	487.8031533309194	24.304	0.51977	24.304	24.085	24.605	0					33	17	3	0	0	0	0.37071	1	3701	3701		22.736	3.4793	1	91774			19982	797	11303	11304	25137	25137					0.10417735714224818
KSTKERLL	8	Unmodified	_KSTKERLL_					0	0	0		nc|ENSG00000064886|Q15782-6|CHI3L2;ENSG00000064886|ENST00000369748|CHI3L2;nc|ENSG00000064886|Q15782-5|CHI3L2	nc|ENSG00000064886|Q15782-6|CHI3L2	nc|ENSG00000064886|Q15782-6|CHI3L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.8030700683594	2	487.803291	973.59203	0.18998	9.2671E-05	-0.16046	-7.8274E-05	0.029515	1.4397E-05	487.8031568521736	24.391	0.5108	24.353	24.135	24.646	-0.038927					31	17	2	0	0	0	0.40115	2	3722	3722;3774		19.257	0	1	125000			19983	797	11303	11304	25138;25139	25138					0.10417735714224818
KSTLSPPEASP	11	Unmodified	_KSTLSPPEASP_					0	0	0		nc|ENSG00000171813|Q6NUJ5-2|PWWP2B;ENSG00000171813|ENST00000305233|PWWP2B	nc|ENSG00000171813|Q6NUJ5-2|PWWP2B	nc|ENSG00000171813|Q6NUJ5-2|PWWP2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2769775390625	2	557.292953	1112.57135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.298	1	75.35	74.85	75.85	0.052361								0	0	0	0.29456	1	19331	19331		20.415	5.5763	1				19984	6579	11304	11305	25140	25140					0.019571005438820066
KSTRARLVFR	10	Unmodified	_KSTRARLVFR_					0	0	0		nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2467956542969	3	411.922801	1232.74657	-0.20843	-8.5858E-05	-0.1115	-4.593E-05	-0.31993	-0.00013179	411.9226919408602	24.931	0.47146	24.9	24.709	25.181	-0.031408					23	15	2	0	0	0	0.32137	1	3879	3879		1.7423	0	1	38366			19985	1792	11305	11306	25141	25141					0.1395098491943827
KSTSNITKL	9	Unmodified	_KSTSNITKL_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2928771972656	2	496.292756	990.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.587	1	18.47	17.97	18.97	-0.11739								0	0	0	0.25197	1	1979	1979		5.7319	0.83484	1				19986	3269	11306	11307	25142	25142					0.07529725614688232
KSTTTGHLIYK	11	Unmodified	_KSTTTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.903076171875	3	416.903072	1247.68739	-0.11199	-4.6688E-05	-0.15986	-6.6644E-05	-0.27184	-0.00011333	416.9029578643341	17.775	1.5788	17.775	17.186	18.765	0					130	54	5	0	0	0	7.8445E-06	2	1746	1702;1746		100.94	59.591	1	1974500			19987	5239	11307	11308	25143;25144	25144					0.07345044114617849
KSTTTGHLIYK	11	Unmodified	_KSTTTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.8514404296875	2	624.85097	1247.68739	0.27099	0.00016933	0.1136	7.0983E-05	0.38459	0.00024031	624.8509122494548	17.814	0.5584	17.814	17.568	18.127	0					51	18	4	0	0	0	0.28064	2	1718	1718;1769		23.964	13.814	1	170380			19988	5239	11307	11308	25145;25146	25145					0.07345044114617849
KSTTTGHLIYK	11	Unmodified	_KSTTTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9031677246094	3	416.903072	1247.68739	0.0099856	4.163E-06	-0.22782	-9.4978E-05	-0.21783	-9.0815E-05	416.90299128859266	17.965	1.0868	17.848	17.414	18.501	-0.11739					125	37	5	0	0	0	1.1839E-05	2	1793	1751;1793		97.138	62.058	1	2418800			19989	5239	11307	11308	25147;25148	25148					0.07345044114617849
KSTTTGHLIYK	11	Unmodified	_KSTTTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.85107421875	2	624.85097	1247.68739	-0.14971	-9.3545E-05	0.43373	0.00027102	0.28403	0.00017747	624.8510819216509	17.947	0.45812	17.829	17.631	18.089	-0.11739					42	15	4	0	0	0	0.30475	2	1772	1772;1826		21.799	13.644	1	238060			19990	5239	11307	11308	25149;25150	25149					0.07345044114617849
KSTTTGHLIYK	11	Unmodified	_KSTTTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.85107421875	2	624.85097	1247.68739	0.0087019	5.4374E-06	0.24116	0.00015069	0.24986	0.00015612	624.8510193083096	18	0.63306	17.94	17.65	18.283	-0.06007					54	22	4	0	0	0	0.26959	2	1802	1757;1802		24.957	12.782	1	139610			19991	5239	11307	11308	25151;25152	25152					0.07345044114617849
KSTTTGHLIYK	11	Unmodified	_KSTTTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.9031066894531	3	416.903072	1247.68739	-0.0064095	-2.6722E-06	-0.26356	-0.00010988	-0.26997	-0.00011255	416.90296945119485	17.95	1.6859	17.89	17.358	19.044	-0.060431					138	59	4	0	0	0	1.583E-05	1	1783	1783		93.336	51.989	1	2187400			19992	5239	11307	11308	25153	25153					0.07345044114617849
KSVIGSGTW	9	Unmodified	_KSVIGSGTW_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENST00000475306.1_1_1:24410803-24434643:-|nuORF	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.23663330078125	2	467.753267	933.491981	0.60842	0.00028459	-1.6486	-0.00077115	-1.0402	-0.00048657	467.75350016040846	33.795	0.72585	33.861	33.538	34.264	0.06636					51	25	3	0	0	0	0.17696	1	6547	6547		29.841	0	1	278920			19993	4458	11308	11309	25154	25154					0.022574983804247495
KSVKKRDYAL	10	Unmodified	_KSVKKRDYAL_					0	0	0			REV__ENSG00000099194|ENST00000370355|SCD	REV__ENSG00000099194|ENST00000370355|SCD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.55450439453125	3	403.243429	1206.70846	-0.41917	-0.00016903	0.40654	0.00016393	-0.012628	-5.0921E-06	403.2435263533398	13.781	0.18532	13.781	13.687	13.872	0					10	6	2	0	0	0	0.32068	1	547	547		3.5871	0.85186	1	23990	+		19994	14122	11309	11310	25155	25155					0.11337054214141062
KSVSIYLYF	9	Unmodified	_KSVSIYLYF_					0	0	0			REV__ENST00000447467.6_1_7:95726813-95727326:+|nuORF	REV__ENST00000447467.6_1_7:95726813-95727326:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3063354492188	2	560.307875	1118.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.224	1	88.224	87.724	88.724	0								0	0	0	0.25352	1	23296	23296		5.2307	0.33366	1		+		19995	21090	11310	11311	25156	25156					0.046640842798979065
KSWAQASVT	9	Unmodified	_KSWAQASVT_					0	0	0		nc|ENSG00000204469|P48634-4|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	nc|ENSG00000204469|P48634-4|PRRC2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.24951171875	2	489.256174	976.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.919	1	46.973	46.473	47.473	0.054371								0	0	0	0.20639	1	10602	10602		20.454	7.9221	1				19996	8230	11311	11312	25157	25157					0.00860596892096055
KSWFLFFLSL	10	Unmodified	_KSWFLFFLSL_					0	0	0			REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.360107421875	2	644.360442	1286.70633	0.57381	0.00036974	-0.2218	-0.00014292	0.35201	0.00022682	644.3602537406899	85.687	1.7793	85.771	85.001	86.781	0.084251					110	68	2	0	0	0	0.40106	1	22518	22518		3.2813	0.28607	1	293540	+		19997	21285	11312	11313	25158	25158					0.07444625476341571
KSYAGYQTL	9	Unmodified	_KSYAGYQTL_					0	0	0		nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	nc|ENSG00000005893|P13473-2|LAMP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7633666992188	2	515.763832	1029.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.972	1	34.972	34.472	35.472	0								0	0	0	0.14907	1	6954	6954		34.932	12.196	1				19998	12557	11313	11314	25159	25159					-0.00046536310719602625
KSYCWPWL	8	Unmodified	_KSYCWPWL_					0	0	0		ENST00000216484.6_1_14:77978077-77978326:-|nuORF	ENST00000216484.6_1_14:77978077-77978326:-|nuORF	ENST00000216484.6_1_14:77978077-77978326:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7598876953125	2	541.760038	1081.50552	0.2627	0.00014232	-0.97905	-0.00053041	-0.71635	-0.00038809	541.7595048810592	27.444	0.457	27.423	27.158	27.615	-0.021412					26	15	2	0	0	0	0.34319	1	4675	4675		5.7604	5.7604	1	138980			19999	8818	11314	11315	25160	25160					-0.03196967111989579
KSYNLLIHER	10	Unmodified	_KSYNLLIHER_					0	0	0		ENSG00000143867|ENST00000272223|OSR1;nc|ENSG00000164920|Q8N2R0-2|OSR2;ENSG00000164920|ENST00000297565|OSR2;nc|ENSG00000164920|Q8N2R0-3|OSR2	ENSG00000143867|ENST00000272223|OSR1;nc|ENSG00000164920|Q8N2R0-2|OSR2	ENSG00000143867|ENST00000272223|OSR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.8872985839844	3	424.906816	1271.69862	-0.28114	-0.00011946	-0.82072	-0.00034873	-1.1019	-0.00046819	424.90630561659844	29.801	0.47365	29.814	29.564	30.038	0.013474					28	15	3	0	0	0	0.31458	1	5351	5351		11.631	8.5591	1	166160			20000	4553;5899	11315	11316	25161	25161					0.07363866208766012
KSYPLVHVV	9	Unmodified	_KSYPLVHVV_					0	0	0		nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2959594726562	2	521.30821	1040.60187	0.44875	0.00023393	-0.96364	-0.00050235	-0.51489	-0.00026842	521.3074874775192	37.888	0.1376	37.979	37.934	38.072	0.090881					5	4	2	0	0	0	0.29176	1	7856	7856		10.074	1.4806	1	79036			20001	6313	11316	11317	25162	25162					0.0831892371959384
KSYPLVHVV	9	Unmodified	_KSYPLVHVV_					0	0	0		nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2955932617188	2	521.30821	1040.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.895	1	37.992	37.492	38.492	0.097527								0	0	0	0.24264	1	7841	7841		8.7454	2.0222	1				20002	6313	11316	11317	25163	25163					0.0831892371959384
KSYPSPLAPG	10	Unmodified	_KSYPSPLAPG_					0	0	0			REV__ENSG00000066735|ENST00000423312|KIF26A	REV__ENSG00000066735|ENST00000423312|KIF26A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7735900878906	2	508.7742	1015.53385	0.33514	0.00017051	-1.2197	-0.00062054	-0.88453	-0.00045003	508.7736799446587	29.958	0.51748	29.97	29.685	30.202	0.012266					33	17	3	0	0	0	0.33817	1	5402	5402		14.838	1.2234	1	196960	+		20003	13682	11317	11318	25164	25164					0.02670054068948957
KSYPSPLAPG	10	Unmodified	_KSYPSPLAPG_					0	0	0			REV__ENSG00000066735|ENST00000423312|KIF26A	REV__ENSG00000066735|ENST00000423312|KIF26A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	508.7742	1015.53385	0.44918	0.00022853	-0.83715	-0.00042592	-0.38797	-0.00019739	508.7738726393875	29.939	0.53957	29.939	29.686	30.225	0	-0.015428	0.00017308	NaN	14.838	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146730	+		20004	13682	11317	11318							0.02670054068948957
KTAEDAKDFFK	11	Unmodified	_KTAEDAKDFFK_					0	0	0		ENSG00000123349|ENST00000334478|PFDN5;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.8908386230469	3	433.890832	1298.65067	-0.28629	-0.00012422	0.54207	0.0002352	0.25579	0.00011098	433.89100929462427	29.609	1.418	29.623	28.728	30.146	0.013475					112	49	4	0	0	0	0.0052625	1	5328	5328		79.697	63.131	1	2205600			20005	3099	11318	11319	25165	25165					0.013287474980188563
KTAEDAKDFFK	11	Unmodified	_KTAEDAKDFFK_					0	0	0		ENSG00000123349|ENST00000334478|PFDN5;ENST00000553171.1_1_12:53691669-53691972:+|nuORF;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	433.890832	1298.65067	0.015176	6.5846E-06	0.22297	9.6745E-05	0.23815	0.00010333	433.890859385541	29.517	1.5521	29.529	28.706	30.258	0.012264	-0.04659	-0.00020329	NaN	79.697	131	53	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2071800			20006	3099	11318	11319							0.013287474980188563
KTAEFLSKL	9	Unmodified	_KTAEFLSKL_					0	0	0		ENST00000535677.5_1_13:43491732-43537592:-|nuORF;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;nc|ENSG00000133106|Q96J88-3|EPSTI1	ENST00000535677.5_1_13:43491732-43537592:-|nuORF	ENST00000535677.5_1_13:43491732-43537592:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2852783203125	2	518.8055	1035.59645	0.53514	0.00027763	-0.80533	-0.00041781	-0.27019	-0.00014017	518.8050542367322	40.338	0.56648	40.431	40.151	40.718	0.09267					33	20	2	0	0	0	0.23693	1	8626	8626		21.59	9.3495	1	304790			20007	3695	11319	11320	25166	25166					0.08007200137149084
KTAKSVPCML	10	Unmodified	_KTAKSVPCML_					0	0	0			REV__ENST00000591865.1_1_18:44423974-44424793:-|nuORF	REV__ENST00000591865.1_1_18:44423974-44424793:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8154296875	2	539.293388	1076.57222	0.12119	6.5355E-05	2.2308	0.001203	2.3519	0.0012684	539.2950105118018	12.911	0.36861	12.811	12.611	12.98	-0.099291					17	11	2	0	0	0	0.32072	1	306	306		2.9952	0.69251	1	27285	+		20008	22568	11320	11321	25167	25167					0.03699900387618982
KTAPDIQFVHA	11	Unmodified	_KTAPDIQFVHA_					0	0	0			REV__ENST00000599808.1_1_19:19049437-19049791:-|nuORF	REV__ENST00000599808.1_1_19:19049437-19049791:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5555419921875	3	409.555784	1225.64552	-0.10444	-4.2775E-05	-0.49424	-0.00020242	-0.59868	-0.00024519	409.55571461488597	17.895	0.52297	17.777	17.515	18.038	-0.11739					38	17	3	0	0	0	0.46171	1	1765	1765		3.134	1.6788	1	146610	+		20009	13567	11321	11322	25168	25168					0.041724884260929684
KTAQKFLRP	9	Unmodified	_KTAQKFLRP_					0	0	0		ENSG00000169519|ENST00000407364|METTL15	ENSG00000169519|ENST00000407364|METTL15	ENSG00000169519|ENST00000407364|METTL15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.83251953125	2	544.832383	1087.65021	0.38305	0.0002087	-0.13123	-7.1496E-05	0.25183	0.0001372	544.8322281720777	15.234	0.45323	15.125	14.955	15.408	-0.10981					33	15	3	0	0	0	0.31417	1	978	978		6.7232	2.3939	1	110820			20010	6361	11322	11323	25169	25169					0.10989417359519393
KTAQKFLRP	9	Unmodified	_KTAQKFLRP_					0	0	0		ENSG00000169519|ENST00000407364|METTL15	ENSG00000169519|ENST00000407364|METTL15	ENSG00000169519|ENST00000407364|METTL15	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	544.832383	1087.65021	0.17809	9.7029E-05	0.18779	0.00010231	0.36588	0.00019934	544.8324579962258	15.123	0.40115	15.123	14.981	15.382	0	-0.020353	0.00017325	NaN	6.7232	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119840			20011	6361	11322	11323							0.10989417359519393
KTAQKFLRP	9	Unmodified	_KTAQKFLRP_					0	0	0		ENSG00000169519|ENST00000407364|METTL15	ENSG00000169519|ENST00000407364|METTL15	ENSG00000169519|ENST00000407364|METTL15	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	544.832383	1087.65021	0.31374	0.00017093	-0.2375	-0.0001294	0.076242	4.1539E-05	544.8321995753008	15.247	0.35007	15.182	15.041	15.391	-0.064414	0.039027	-0.00029017	NaN	6.7232	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121700			20012	6361	11322	11323							0.10989417359519393
KTCKVFAR	8	Unmodified	_KTCKVFAR_					0	0	0			REV__ENST00000487659.1_1_1:1342042-1342597:-|nuORF	REV__ENST00000487659.1_1_1:1342042-1342597:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7577819824219	2	476.77348	951.532406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.831	1	34.907	34.407	35.407	0.075306								0	0	0	0.35251	1	6911	6911		13.508	0	1		+		20013	19184	11323	11324	25170	25170					0.05470141499199599
KTDAKRLH	8	Unmodified	_KTDAKRLH_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7853698730469	2	484.785433	967.556313	-0.12794	-6.2024E-05	1.4126	0.00068479	1.2846	0.00062277	484.78600997010227	13.029	0.48285	12.962	12.763	13.245	-0.067495					39	16	3	0	0	0	0.44389	1	310	310		7.9102	1.187	1	123190			20014	1910	11324	11325	25171	25171					0.07123698257237265
KTDLEKKS	8	Unmodified	_KTDLEKKS_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7716979980469	2	474.771657	947.528761	-0.1663	-7.8953E-05	-0.41477	-0.00019692	-0.58107	-0.00027587	474.77145536419704	14.77	0.70234	14.77	14.478	15.181	0					57	24	4	0	0	0	0.43127	1	871	871		12.241	2.8575	1	418620			20015	4545	11325	11326	25172	25172					0.05289750206338795
KTDLEKKS	8	Unmodified	_KTDLEKKS_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7717590332031	2	474.771657	947.528761	0.001172	5.5645E-07	-0.46855	-0.00022245	-0.46738	-0.0002219	474.77144488864934	14.844	0.60883	14.735	14.484	15.093	-0.10981					47	21	3	0	0	0	0.4396	1	901	901		9.3831	0.63772	1	408390			20016	4545	11325	11326	25173	25173					0.05289750206338795
KTDYILRFN	9	Unmodified	_KTDYILRFN_					0	0	0			REV__ENST00000486733.2_1_X:71494866-71496063:-|nuORF	REV__ENST00000486733.2_1_X:71494866-71496063:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.2721557617188	2	585.319306	1168.62406	0.31818	0.00018624	-2.0456	-0.0011973	-1.7274	-0.0010111	585.3180508722005	32.703	0.66492	32.759	32.478	33.143	0.055309					30	23	2	0	0	0	0.2524	1	6200	6200		11.495	4.2055	1	227750	+		20017	18790	11326	11327	25174	25174					0.04649103397400722
KTEDKVRVM	9	Oxidation (M)	_KTEDKVRVM(Oxidation (M))_		KTEDKVRVM(1)		KTEDKVRVM(40)	0	0	1		ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000196954|P49662-4|CASP4;ENST00000531546.1_1_11:104822523-104839261:-|nuORF;nc|ENSG00000196954|P49662-5|CASP4;ENST00000533730.5_1_11:104822704-104839261:-|nuORF;nc|ENSG00000196954|P49662-3|CASP4;ENST00000531333.5_1_11:104821760-104839261:-|nuORF;ENST00000529183.5_1_11:104820451-104839261:-|nuORF	ENSG00000196954|ENST00000444739|CASP4	ENSG00000196954|ENST00000444739|CASP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.3026123046875	2	561.302798	1120.59104	-0.05117	-2.8722E-05	-0.071324	-4.0034E-05	-0.12249	-6.8756E-05	561.3026782377232	13.204	0.27521	13.204	13.09	13.365	0					17	9	2	0	0	0	0.086462	1	353	353		40.239	22.093	1	246950			20018	7918	11327	11328	25175	25175		865			0.03557153283009029
KTEPRGPG	8	Unmodified	_KTEPRGPG_					0	0	0		ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2430419921875	2	421.229959	840.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.173	1	15.063	14.563	15.563	-0.10981								0	0	0	0.35466	1	949	949		12.532	0	1				20019	2215	11328	11329	25176	25176					0.018760585491463644
KTEQFYRKLL	10	Unmodified	_KTEQFYRKLL_					0	0	0		ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENST00000574287.1_1_16:11941440-11945369:-|nuORF	ENSG00000171490|ENST00000571133|RSL1D1	ENSG00000171490|ENST00000571133|RSL1D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.59075927734375	3	442.590717	1324.75032	0.10496	4.6454E-05	-0.28456	-0.00012594	-0.1796	-7.9488E-05	442.5906294985007	46.168	1.1468	46.168	45.666	46.813	0					141	41	5	0	0	0	0.35267	1	10462	10462		12.175	12.175	1	10377000			20020	6547	11329	11330	25177	25177					0.10093609902651224
KTETPIVSK	9	Unmodified	_KTETPIVSK_					0	0	0		ENST00000476395.1_1_20:57015848-57019288:+|nuORF;ENST00000463370.5_1_20:57007450-57019288:+|nuORF;ENSG00000124164|ENST00000475243|VAPB	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.79534912109375	2	501.795132	1001.57571	0.21987	0.00011033	0.33014	0.00016566	0.55001	0.00027599	501.79522865997393	16.335	0.74105	16.335	16.008	16.749	0					75	25	4	0	0	0	0.01251	4	1307	1242;1259;1307;1350		75.571	39.064	1	525840			20021	3135	11330	11331	25178;25179;25180;25181	25180					0.07498609757476515
KTETPIVSK	9	Unmodified	_KTETPIVSK_					0	0	0		ENST00000476395.1_1_20:57015848-57019288:+|nuORF;ENST00000463370.5_1_20:57007450-57019288:+|nuORF;ENSG00000124164|ENST00000475243|VAPB	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7953796386719	2	501.795132	1001.57571	0.13577	6.8127E-05	0.49621	0.000249	0.63198	0.00031712	501.795317788905	16.415	0.84417	16.301	15.987	16.831	-0.11434					66	29	3	0	0	0	0.003929	3	1339	1290;1339;1381		94.909	45.354	1	510210			20022	3135	11330	11331	25182;25183;25184	25183					0.07498609757476515
KTETPIVSK	9	Unmodified	_KTETPIVSK_					0	0	0		ENST00000476395.1_1_20:57015848-57019288:+|nuORF;ENST00000463370.5_1_20:57007450-57019288:+|nuORF;ENSG00000124164|ENST00000475243|VAPB	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	ENST00000476395.1_1_20:57015848-57019288:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7953796386719	2	501.795132	1001.57571	0.27712	0.00013906	0.29215	0.0001466	0.56927	0.00028566	501.7952345306422	16.419	0.90493	16.357	16.038	16.943	-0.062532					78	31	4	0	0	0	0.0035713	2	1335	1292;1335		97.741	52.041	1	517500			20023	3135	11330	11331	25185;25186	25186					0.07498609757476515
KTFACQMYNL	10	Unmodified	_KTFACQMYNL_					0	0	0		nc|ENSG00000127412|Q9NQA5-2|TRPV5;TRPV5|p.M577*|1|0.23|ENSG00000127412|chr7:142912542-142912542|G/-|frameshift_variant;nc|ENSG00000165125|Q9H1D0-2|TRPV6;ENSG00000127412|ENST00000265310|TRPV5;ENSG00000165125|ENST00000359396|TRPV6	nc|ENSG00000127412|Q9NQA5-2|TRPV5	nc|ENSG00000127412|Q9NQA5-2|TRPV5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.78662109375	2	609.785927	1217.5573	0.469	0.00028599	1.3462	0.0008209	1.8152	0.0011069	609.7865840299831	64.468	0.7708	64.458	64.203	64.974	-0.0095291					57	27	4	0	0	0	0.22295	1	16026	16026		29.841	11.467	1	766170			20024	3317	11331	11332	25187	25187					-0.042775914803996784
KTFALPGIIK	10	Unmodified	_KTFALPGIIK_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.347412109375	2	544.347335	1086.68012	0.68471	0.00037272	-0.29118	-0.0001585	0.39353	0.00021422	544.3470828029117	50.254	0.73724	50.254	50.001	50.738	0					66	26	3	0	0	0	0.0027997	2	11645	11645;11695		104.48	76.856	1	1661400			20025	5280	11332	11333	25188;25189	25188					0.14024356304844332
KTFALPGIIK	10	Unmodified	_KTFALPGIIK_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.347335	1086.68012	1.1444	0.00062293	-0.69501	-0.00037833	0.44935	0.0002446	544.3468479638678	50.23	0.81098	50.275	50.06	50.871	0.044891	0.010509	-0.00025941	NaN	104.48	70	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1627000			20026	5280	11332	11333							0.14024356304844332
KTFALPGIIKK	11	Unmodified	_KTFALPGIIKK_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.9322509765625	3	405.932303	1214.77508	-0.17609	-7.1481E-05	0.082202	3.3369E-05	-0.093888	-3.8112E-05	405.9322837533004	40.901	0.91006	40.901	40.445	41.355	0					104	33	4	0	0	0	4.7736E-06	1	8765	8765		129.22	129.22	1	2244000			20027	5280	11333	11334	25190	25190					0.17628289776007477
KTFALPGIIKK	11	Unmodified	_KTFALPGIIKK_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.9322204589844	3	405.932303	1214.77508	0.04372	1.7747E-05	-0.24367	-9.8915E-05	-0.19995	-8.1168E-05	405.93216171515644	40.731	0.85535	40.823	40.42	41.275	0.09267					97	31	4	0	0	0	0.00066348	2	8690	8690;8737		101.57	81.942	1	2469600			20028	5280	11333	11334	25191;25192	25191					0.17628289776007477
KTFALPGIIKK	11	Unmodified	_KTFALPGIIKK_					0	0	0		ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	ENSG00000157107|ENST00000430046|FCHO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.9322509765625	3	405.932303	1214.77508	-0.10362	-4.2061E-05	-0.15558	-6.3157E-05	-0.2592	-0.00010522	405.93221286216067	40.639	0.86486	40.739	40.397	41.262	0.099407					97	31	4	0	0	0	2.3569E-05	2	8672	8672;8720		111.53	86.647	1	2877900			20029	5280	11333	11334	25193;25194	25193					0.17628289776007477
KTFEGNLTTK	10	Unmodified	_KTFEGNLTTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.8088989257812	2	569.808771	1137.60299	0.10396	5.9237E-05	-0.38267	-0.00021805	-0.27871	-0.00015881	569.8088539431072	22.341	0.68549	22.341	22.105	22.791	0					60	23	4	0	0	0	0.083104	2	3098	3098;3146		51.765	21.062	1	382400			20030	6781	11334	11335	25195;25196	25195					0.039690932978373894
KTFEGNLTTK	10	Unmodified	_KTFEGNLTTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.80908203125	2	569.808771	1137.60299	0.24602	0.00014019	0.44847	0.00025554	0.6945	0.00039573	569.8088030016194	22.421	0.76239	22.333	22.057	22.819	-0.088139					60	27	3	0	0	0	0.13068	2	3118	3118;3162		41.347	19.757	1	372960			20031	6781	11334	11335	25197;25198	25197					0.039690932978373894
KTFEGNLTTK	10	Unmodified	_KTFEGNLTTK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.808837890625	2	569.808771	1137.60299	0.039708	2.2626E-05	0.56898	0.00032421	0.60869	0.00034684	569.8088732277085	22.404	0.69459	22.359	22.095	22.789	-0.044867					56	23	3	0	0	0	0.18007	2	3114	3114;3166		35.08	12.422	1	336290			20032	6781	11334	11335	25199;25200	25199					0.039690932978373894
KTFFIQATQ	9	Unmodified	_KTFFIQATQ_					0	0	0			REV__ENSG00000167778|ENST00000301463|SPRYD3	REV__ENSG00000167778|ENST00000301463|SPRYD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3364868164062	2	542.295299	1082.57605	0.42803	0.00023212	1.3588	0.00073686	1.7868	0.00096898	542.797008889277	95.468	0.29621	95.545	95.308	95.604	0.077408					47	28	3	0	0	0	0.25938	1	25468	25468		4.3292	0	1	120320	+		20033	17411	11335	11336	25201	25201					0.038060294773458736
KTFGQRTLK	9	Unmodified	_KTFGQRTLK_					0	0	0		ENST00000531569.1_1_11:35936821-35939650:-|nuORF	ENST00000531569.1_1_11:35936821-35939650:-|nuORF	ENST00000531569.1_1_11:35936821-35939650:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.9102172851562	2	539.822015	1077.62948	0.50971	0.00027515	-0.082512	-4.4542E-05	0.4272	0.00023061	539.8218811040296	29.903	0.25634	29.915	29.803	30.06	0.012266					10	8	2	0	0	0	0.25949	1	5437	5437		4.897	1.3005	1	66289			20034	11627	11336	11337	25202	25202					0.0937682697983746
KTFGQRTLK	9	Unmodified	_KTFGQRTLK_					0	0	0		ENST00000531569.1_1_11:35936821-35939650:-|nuORF	ENST00000531569.1_1_11:35936821-35939650:-|nuORF	ENST00000531569.1_1_11:35936821-35939650:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	539.822015	1077.62948	0.25497	0.00013764	-0.26088	-0.00014083	-0.0059075	-3.189E-06	539.821896207897	29.967	0.15782	29.981	29.88	30.038	0.013474	0.044769	0.00020695	NaN	4.897	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77758			20035	11627	11336	11337							0.0937682697983746
KTFPTLINWT	10	Unmodified	_KTFPTLINWT_					0	0	0			REV__nc|ENSG00000096088|P20142-2|PGC	REV__nc|ENSG00000096088|P20142-2|PGC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.90692138671875	3	407.560646	1219.66011	-0.43528	-0.0001774	-0.10838	-4.4173E-05	-0.54366	-0.00022158	407.8947331067259	12.57	0.44253	12.502	12.167	12.61	-0.06806					17	14	2	0	0	0	0.32167	1	109	109		0.62683	0	1	19205	+		20036	22908	11337	11338	25203	25203					0.05906560574226205
KTFPYQHRY	9	Unmodified	_KTFPYQHRY_					0	0	0		THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant;ENSG00000125676|ENST00000245838|THOC2	THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.8794860839844	3	413.88049	1238.61964	-0.23626	-9.7784E-05	-0.45445	-0.00018809	-0.69071	-0.00028587	413.88031503442954	22.646	0.62732	22.646	22.42	23.047	0					39	21	2	0	0	0	0.152	1	3194	3194		37.075	23.556	1	301410			20037	3222	11338	11339	25204	25204					0.00987638974447691
KTFPYQHRY	9	Unmodified	_KTFPYQHRY_					0	0	0		THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant;ENSG00000125676|ENST00000245838|THOC2	THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.8797912597656	3	413.88049	1238.61964	0.089046	3.6854E-05	-1.1888	-0.00049202	-1.0998	-0.00045517	413.88012745810903	22.739	0.75814	22.694	22.379	23.137	-0.044867					76	26	4	0	0	0	0.052436	1	3241	3241		74.2	55.827	1	310860			20038	3222	11338	11339	25205	25205					0.00987638974447691
KTFQFLIIKE	10	Unmodified	_KTFQFLIIKE_					0	0	0		ENST00000521072.6_2_6:109721262-109740422:-|nuORF	ENST00000521072.6_2_6:109721262-109740422:-|nuORF	ENST00000521072.6_2_6:109721262-109740422:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3784790039062	2	633.876456	1265.73836	0.45046	0.00028553	-3.5879	-0.0022743	-3.1375	-0.0019888	634.3772778497173	113.35	0.42776	113.37	113.27	113.7	0.014824					79	51	3	0	0	0	0.41085	1	29503	29503		1.4819	0.15237	1	46316			20039	11484	11339	11340	25206	25206					0.11611993159476697
KTFREEQCE	9	Unmodified	_KTFREEQCE_					0	0	0		ENST00000464589.1_1_21:28211878-28212356:-|nuORF;ENSG00000154734|ENST00000284984|ADAMTS1	ENST00000464589.1_1_21:28211878-28212356:-|nuORF	ENST00000464589.1_1_21:28211878-28212356:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.8311767578125	2	585.266413	1168.51827	0.51643	0.00030225	1.028	0.00060165	1.5444	0.0009039	585.2670819063005	52.86	0.26711	52.91	52.74	53.008	0.050575					13	9	2	0	0	0	0.25431	1	12447	12447		9.3831	0.40688	1	215180			20040	5143	11340	11341	25207	25207					-0.059246005103887
KTFRIKRFLAK	11	Unmodified	_KTFRIKRFLAK_					0	0	0		ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7869567871094	3	469.969751	1406.88742	-0.26389	-0.00012402	-0.028966	-1.3613E-05	-0.29285	-0.00013763	469.9696737051331	28.157	0.90669	28.157	27.763	28.67	0					64	31	3	0	0	0	0.33263	1	4898	4898		3.8459	1.7619	1	186700			20041	8159	11341	11342	25208	25208					0.20025563572880856
KTFRPPYYHR	10	Unmodified	_KTFRPPYYHR_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.578857421875	3	455.578923	1363.71494	-0.058181	-2.6506E-05	-0.32979	-0.00015025	-0.38797	-0.00017675	455.5787822426915	23.413	0.81042	23.413	23.077	23.887	0					60	27	3	0	0	0	0.34896	1	3470	3470		12.856	7.8084	1	174540			20042	2540	11342	11343	25209	25209					0.04762992165478863
KTFRPPYYHR	10	Unmodified	_KTFRPPYYHR_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.5785217285156	3	455.578923	1363.71494	0.04547	2.0715E-05	-0.86639	-0.00039471	-0.82092	-0.00037399	455.5784886887907	23.583	0.81286	23.511	23.153	23.966	-0.072559					76	28	4	0	0	0	0.34896	1	3492	3492		12.856	2.8397	1	151480			20043	2540	11342	11343	25210	25210					0.04762992165478863
KTFRPPYYHR	10	Unmodified	_KTFRPPYYHR_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.57855224609375	3	455.578923	1363.71494	0.1932	8.802E-05	-0.99383	-0.00045277	-0.80063	-0.00036475	455.57842829598104	23.566	0.65364	23.527	23.255	23.909	-0.038927					51	22	3	0	0	0	0.37823	1	3487	3487		7.4771	1.2427	1	151150			20044	2540	11342	11343	25211	25211					0.04762992165478863
KTFSEILNR	9	Unmodified	_KTFSEILNR_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.311767578125	2	554.31148	1106.60841	0.45268	0.00025093	-0.27062	-0.00015001	0.18206	0.00010092	554.3112547848483	35.781	0.43727	35.781	35.575	36.012	0					28	15	2	0	0	0	0.033439	1	7191	7191		59.052	37.515	1	470820			20045	276	11343	11344	25212	25212					0.05936816880330298
KTFSEILNR	9	Unmodified	_KTFSEILNR_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3117065429688	2	554.31148	1106.60841	0.40793	0.00022612	0.062623	3.4713E-05	0.47055	0.00026083	554.3115191280436	35.668	0.41347	35.75	35.54	35.954	0.082359					35	14	3	0	0	0	0.0099976	1	7176	7176		79.427	45.025	1	533680			20046	276	11343	11344	25213	25213					0.05936816880330298
KTFSEILNR	9	Unmodified	_KTFSEILNR_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.311767578125	2	554.31148	1106.60841	0.19217	0.00010652	0.03702	2.0521E-05	0.22919	0.00012704	554.3114635425335	35.675	0.42148	35.761	35.537	35.958	0.08625					32	14	3	0	0	0	0.038291	1	7152	7152		57.249	35.712	1	448460			20047	276	11343	11344	25214	25214					0.05936816880330298
KTFTIKRFLAK	11	Unmodified	_KTFTIKRFLAK_					0	0	0		ENSG00000163923|ENST00000296277|RPL39L	ENSG00000163923|ENST00000296277|RPL39L	ENSG00000163923|ENST00000296277|RPL39L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.618896484375	3	451.618607	1351.83399	0.7663	0.00034608	-0.34866	-0.00015746	0.41764	0.00018861	451.6184329148444	33.762	0.46987	33.829	33.596	34.066	0.06636					31	16	2	0	0	0	0.42899	1	6600	6600		7.4291	2.3816	1	288610			20048	5757	11344	11345	25215	25215					0.17214766070355836
KTFTIKRFLAK	11	Unmodified	_KTFTIKRFLAK_					0	0	0		ENSG00000163923|ENST00000296277|RPL39L	ENSG00000163923|ENST00000296277|RPL39L	ENSG00000163923|ENST00000296277|RPL39L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.61871337890625	3	451.618607	1351.83399	0.057223	2.5843E-05	0.15786	7.1294E-05	0.21509	9.7137E-05	451.6186534215778	33.815	0.5518	33.882	33.657	34.209	0.0667					33	19	2	0	0	0	0.41892	1	6607	6607		8.7518	4.0359	1	247370			20049	5757	11344	11345	25216	25216					0.17214766070355836
KTGELVQFLLN	11	Unmodified	_KTGELVQFLLN_					0	0	0		ENSG00000182798|ENST00000400004|MAGEB17	ENSG00000182798|ENST00000400004|MAGEB17	ENSG00000182798|ENST00000400004|MAGEB17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.3616333007812	2	631.36117	1260.70779	0.085166	5.3771E-05	0.48069	0.00030349	0.56586	0.00035726	631.3613869590771	14.911	0.83469	14.847	14.589	15.424	-0.064413					67	28	3	0	0	0	0.40539	1	883	883		12.873	0	1	94527			20050	7320	11345	11346	25217	25217					0.08786214774454493
KTGEVLDTK	9	Unmodified	_KTGEVLDTK_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7768859863281	2	495.776939	989.539325	0.11698	5.7997E-05	0.1236	6.128E-05	0.24059	0.00011928	495.77689538016244	15.076	0.60286	15.076	14.925	15.528	0					45	20	3	0	0	0	0.15173	1	934	934		30.703	6.9137	1	319130			20051	7915	11346	11347	25218	25218					0.04413732860746222
KTGEVLDTK	9	Unmodified	_KTGEVLDTK_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7769775390625	2	495.776939	989.539325	0.19107	9.473E-05	-0.074177	-3.6775E-05	0.1169	5.7955E-05	495.77680871567145	15.178	0.61336	15.068	14.877	15.491	-0.10982					47	21	3	0	0	0	0.24833	1	974	974		16.566	0.71869	1	284470			20052	7915	11346	11347	25219	25219					0.04413732860746222
KTGEVLDTK	9	Unmodified	_KTGEVLDTK_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7768859863281	2	495.776939	989.539325	0.068023	3.3724E-05	-0.033616	-1.6666E-05	0.034407	1.7058E-05	495.7768335138221	15.185	0.53321	15.121	14.984	15.517	-0.064413					43	17	3	0	0	0	0.10812	1	961	961		37.075	4.7692	1	335000			20053	7915	11346	11347	25220	25220					0.04413732860746222
KTGEVLDTK	9	Unmodified	_KTGEVLDTK_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	495.776939	989.539325	0.19107	9.473E-05	-0.074177	-3.6775E-05	0.1169	5.7955E-05	495.77680871567145	15.178	0.61336	15.068	14.877	15.491	-0.10982	-0.020568	-8.3763E-05	NaN	37.075	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284470			20054	7915	11346	11347							0.04413732860746222
KTGFLAAR	8	Unmodified	_KTGFLAAR_					0	0	0		ENSG00000171840|ENST00000305108|NINJ2	ENSG00000171840|ENST00000305108|NINJ2	ENSG00000171840|ENST00000305108|NINJ2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.2590637207031	2	432.25852	862.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.689	1	98.682	98.182	99.182	-0.006897								0	0	0	0.37277	1	26443	26443		4.3292	0	1				20055	6583	11347	11348	25221	25221					0.06573525825513116
KTGGNTHK	8	Unmodified	_KTGGNTHK_					0	0	0			REV__COL22A1|p.K1223Rfs*86|1|0.3|ENSG00000169436|chr8:138626235-138626239|TTCTT/-|frameshift_variant	REV__COL22A1|p.K1223Rfs*86|1|0.3|ENSG00000169436|chr8:138626235-138626239|TTCTT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.24298095703125	2	421.727584	841.440614	-0.24934	-0.00010515	-0.22529	-9.5011E-05	-0.47463	-0.00020016	421.7271912517879	15.176	0.29157	15.111	14.984	15.275	-0.064413					13	9	2	0	0	0	0.34247	1	966	966		8.5933	0.68312	1	41717	+		20056	13239	11348	11349	25222	25222					0.013551744063761362
KTGRRHQRR	9	Unmodified	_KTGRRHQRR_					0	0	0			REV__ENST00000485665.1_1_9:35680733-35681019:+|nuORF	REV__ENST00000485665.1_1_9:35680733-35681019:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8558349609375	2	597.855578	1193.6966	0.34624	0.000207	0.85362	0.00051034	1.1999	0.00071734	597.8561046514367	96.953	0.63381	97.024	96.562	97.196	0.070465					90	61	2	0	0	0	0.35563	1	25965	25965		0.52476	0	1	144750	+		20057	14545	11349	11350	25223	25223					0.10750295034154078
KTGVNGFGKLQ	11	Unmodified	_KTGVNGFGKLQ_					0	0	0		ENST00000483099.5_1_1:203830997-203831153:+|nuORF	ENST00000483099.5_1_1:203830997-203831153:+|nuORF	ENST00000483099.5_1_1:203830997-203831153:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.2979125976562	2	574.824755	1147.63496	-0.12983	-7.4631E-05	-4.097	-0.0023551	-4.2268	-0.0024297	574.8218938142261	13.743	0.28174	13.677	13.521	13.802	-0.066067					20	9	3	0	0	0	0.33301	1	505	505		2.086	0.60411	1	68638			20058	11057	11350	11351	25224	25224					0.0670450577167685
KTGWTLSLW	9	Unmodified	_KTGWTLSLW_					0	0	0		ENST00000577409.1_1_18:72183591-72185955:+|nuORF	ENST00000577409.1_1_18:72183591-72185955:+|nuORF	ENST00000577409.1_1_18:72183591-72185955:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.772216796875	2	546.297842	1090.58113	0.33514	0.00018309	-2.9903	-0.0016336	-2.6551	-0.0014505	546.2961334480376	25.344	0.56869	25.289	25.023	25.592	-0.055931					30	19	2	0	0	0	0.24848	1	4008	4008		13.906	4.5229	1	86892			20059	12054	11351	11352	25225	25225					0.03946333339968078
KTGWTLSLW	9	Unmodified	_KTGWTLSLW_					0	0	0		ENST00000577409.1_1_18:72183591-72185955:+|nuORF	ENST00000577409.1_1_18:72183591-72185955:+|nuORF	ENST00000577409.1_1_18:72183591-72185955:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	546.297842	1090.58113	0.35871	0.00019596	-2.6186	-0.0014305	-2.2599	-0.0012346	546.2965028735208	25.331	0.72458	25.331	24.958	25.683	0	0.010977	0.00020951	NaN	13.906	41	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74214			20060	12054	11351	11352							0.03946333339968078
KTGWTLSLW	9	Unmodified	_KTGWTLSLW_					0	0	0		ENST00000577409.1_1_18:72183591-72185955:+|nuORF	ENST00000577409.1_1_18:72183591-72185955:+|nuORF	ENST00000577409.1_1_18:72183591-72185955:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	546.297842	1090.58113	0.18652	0.00010189	-2.8077	-0.0015339	-2.6212	-0.001432	546.2962515092682	25.372	0.5275	25.341	25.098	25.626	-0.03141	0.020635	2.844E-06	NaN	13.906	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109130			20061	12054	11351	11352							0.03946333339968078
KTHAVSAYPL	10	Unmodified	_KTHAVSAYPL_					0	0	0			REV__ENST00000354670.8_1_15:40381832-40382054:-|nuORF	REV__ENST00000354670.8_1_15:40381832-40382054:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3656005859375	2	543.800749	1085.58694	0.77896	0.0004236	2.2115	0.0012026	2.9905	0.0016262	543.802366730184	49.928	0.55782	49.949	49.644	50.202	0.020695					42	20	3	0	0	0	0.29038	1	11453	11453		24.021	1.2843	1	575220	+		20062	20174	11352	11353	25226	25226					0.04757431851612637
KTHSVWPFL	9	Unmodified	_KTHSVWPFL_					0	0	0		nc|ENSG00000102043|Q96EF0-2|MTMR8;ENSG00000102043|ENST00000374852|MTMR8	nc|ENSG00000102043|Q96EF0-2|MTMR8	nc|ENSG00000102043|Q96EF0-2|MTMR8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7545776367188	2	557.805834	1113.59712	0.12477	6.9597E-05	3.9434	0.0021996	4.0681	0.0022692	558.3088833882609	16.085	0.35647	15.97	15.718	16.075	-0.11434					15	11	2	0	0	0	0.25526	1	1180	1180		7.9102	1.187	1	23951			20063	1741	11353	11354	25227	25227					0.044860395768409944
KTHWDNQLWH	10	Unmodified	_KTHWDNQLWH_					0	0	0			REV__nc|ENSG00000112282|Q9ULK4-4|MED23	REV__nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2102966308594	3	455.554666	1363.64217	-0.22139	-0.00010085	1.9197	0.00087453	1.6983	0.00077368	455.5553267359141	12.56	0.20136	12.56	12.498	12.699	0					8	6	2	0	0	0	0.32162	1	177	177		0.77653	0.54069	1	13689	+		20064	14769	11354	11355	25228	25228					-0.025107616279456124
KTIAPALVSK	10	Unmodified	_KTIAPALVSK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;chr1:8874917-8875789|488|27.23|0.78|5.12|-|ENST00000643438|ENO1,ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.3291015625	2	514.329142	1026.64373	0.19938	0.00010255	-0.10529	-5.4152E-05	0.094098	4.8397E-05	514.3290224643997	27.245	0.69313	27.245	26.979	27.673	0					51	23	3	0	0	0	0.026454	1	4595	4595		64.692	33.423	1	381790			20065	1028	11355	11356	25229	25229					0.13147479408144136
KTIAPALVSK	10	Unmodified	_KTIAPALVSK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;chr1:8874917-8875789|488|27.23|0.78|5.12|-|ENST00000643438|ENO1,ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.3290405273438	2	514.329142	1026.64373	0.080521	4.1414E-05	0.134	6.8919E-05	0.21452	0.00011033	514.3290618867495	27.2	0.71829	27.179	26.897	27.615	-0.02141					58	24	3	0	0	0	0.024627	1	4579	4579		66.683	40.415	1	460290			20066	1028	11355	11356	25230	25230					0.13147479408144136
KTIAPALVSK	10	Unmodified	_KTIAPALVSK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;chr1:8874917-8875789|488|27.23|0.78|5.12|-|ENST00000643438|ENO1,ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.3291625976562	2	514.329142	1026.64373	0.10265	5.2795E-05	0.11121	5.7199E-05	0.21386	0.00010999	514.3290727636485	27.168	0.65621	27.157	26.958	27.614	-0.01156					54	22	3	0	0	0	0.024627	1	4572	4572		66.683	40.415	1	439780			20067	1028	11355	11356	25231	25231					0.13147479408144136
KTIDASVSK	9	Unmodified	_KTIDASVSK_					0	0	0		ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.77154541015625	2	474.771657	947.528761	-0.1663	-7.8953E-05	-0.41477	-0.00019692	-0.58107	-0.00027587	474.77145536419704	14.77	0.70234	14.77	14.478	15.181	0					57	24	4	0	0	0	0.069258	1	826	826		45.74	11.338	1	418620			20068	61	11356	11357	25232	25232					0.05289750206327426
KTIDASVSK	9	Unmodified	_KTIDASVSK_					0	0	0		ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.7714538574219	2	474.771657	947.528761	-0.067285	-3.1945E-05	-0.52148	-0.00024758	-0.58876	-0.00027953	474.7714557534536	14.896	0.59318	14.831	14.564	15.158	-0.064413					46	20	3	0	0	0	0.010888	1	864	864		78.06	8.9556	1	452510			20069	61	11356	11357	25233	25233					0.05289750206327426
KTIDASVSKK	10	Unmodified	_KTIDASVSKK_					0	0	0		ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8184814453125	2	538.819138	1075.62372	0.13928	7.5049E-05	-3.4347	-0.0018507	-3.2954	-0.0017756	538.8170963506014	12.973	0.51838	12.973	12.847	13.365	0					59	18	4	0	0	0	0.20826	1	330	330		31.636	11.221	1	340950			20070	61	11357	11358	25234	25234					0.08893683677524677
KTIDASVSKK	10	Unmodified	_KTIDASVSKK_					0	0	0		ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8187255859375	2	538.819138	1075.62372	0.0956	5.1511E-05	-3.178	-0.0017124	-3.0824	-0.0016609	538.8171928955481	13.096	0.63022	12.997	12.785	13.416	-0.099291					58	21	4	0	0	0	0.20826	1	352	352		31.636	5.3676	1	321540			20071	61	11357	11358	25235	25235					0.08893683677524677
KTIDASVSKK	10	Unmodified	_KTIDASVSKK_					0	0	0		ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.818603515625	2	538.819138	1075.62372	0.10869	5.8567E-05	-3.1743	-0.0017104	-3.0656	-0.0016518	538.8171821735866	13.021	0.59649	12.954	12.819	13.416	-0.067495					57	20	5	0	0	0	0.2361	1	342	342		28.234	1.9655	1	340740			20072	61	11357	11358	25236	25236					0.08893683677524677
KTIDGILLL	9	Unmodified	_KTIDGILLL_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620-3|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000158290|Q13620|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.318603515625	2	493.318243	984.621933	0.38112	0.00018801	0.29749	0.00014676	0.6786	0.00033477	493.3182768031063	68.136	1.1349	68.136	67.842	68.977	0					109	41	4	0	0	0	0.0079761	2	17111	17111;17160		82.529	11.396	1	3900400			20073	5350;4268	11358	11359	25237;25238	25237					0.12900674659567812
KTIDGILLL	9	Unmodified	_KTIDGILLL_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620-3|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000158290|Q13620|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.3185119628906	2	493.318243	984.621933	0.41168	0.00020309	0.28919	0.00014266	0.70087	0.00034575	493.3182629437256	68.038	1.1365	68.117	67.834	68.97	0.078041					99	41	4	0	0	0	0.0054984	2	17125	17074;17125		86.332	15.198	1	3595300			20074	5350;4268	11358	11359	25239;25240	25240					0.12900674659567812
KTIDGILLL	9	Unmodified	_KTIDGILLL_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620-3|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000158290|Q13620|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.3185119628906	2	493.318243	984.621933	0.39424	0.00019448	0.211	0.00010409	0.60524	0.00029857	493.3182433453047	68.162	1.3483	68.143	67.836	69.184	-0.019157					102	47	4	0	0	0	0.0037449	2	17144	17096;17144		96.367	25.233	1	3702000			20075	5350;4268	11358	11359	25241;25242	25242					0.12900674659567812
KTIDMELVKRK	11	Oxidation (M)	_KTIDM(Oxidation (M))ELVKRK_		KTIDM(1)ELVKRK		KTIDM(42)ELVKRK	0	0	1		ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.6025695800781	3	459.602517	1375.78572	-0.094246	-4.3316E-05	0.037235	1.7113E-05	-0.057011	-2.6202E-05	459.6025855507636	18.041	0.45812	17.923	17.631	18.089	-0.11739					52	15	4	0	0	0	0.090382	1	1813	1813		41.567	27.396	1	384630			20076	1966	11359	11360	25243	25243		240			0.11285904368128286
KTIDYIQFL	9	Unmodified	_KTIDYIQFL_					0	0	0		ENST00000588320.1_1_17:40720799-40723580:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8197021484375	2	570.818607	1139.62266	0.1603	9.1503E-05	1.0778	0.00061524	1.2381	0.00070675	570.8194360082796	69.884	0.4578	69.884	69.673	70.131	0					30	16	2	0	0	0	0.0041491	1	17679	17679		93.166	30.593	1	1076400			20077	2213	11360	11361	25244	25244					0.0584346930859283
KTIDYIQFL	9	Unmodified	_KTIDYIQFL_					0	0	0		ENST00000588320.1_1_17:40720799-40723580:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8197631835938	2	570.818607	1139.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.872	1	69.938	69.438	70.438	0.066048								0	0	0	0.021896	1	17674	17674		69.338	15.505	1				20078	2213	11360	11361	25245	25245					0.0584346930859283
KTIDYIQFL	9	Unmodified	_KTIDYIQFL_					0	0	0		ENST00000588320.1_1_17:40720799-40723580:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8192749023438	2	570.818607	1139.62266	0.21489	0.00012266	1.0361	0.00059144	1.251	0.00071411	570.8192547268312	69.883	0.4868	69.861	69.701	70.188	-0.022087					31	17	2	0	0	0	0.038672	1	17676	17676		57.108	5.4778	1	1154000			20079	2213	11360	11361	25246	25246					0.0584346930859283
KTISQAVNK	9	Unmodified	_KTISQAVNK_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENST00000495619.1_1_2:183822183-183829436:-|nuORF	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7928466796875	2	494.792924	987.571294	0.085898	4.2502E-05	0.45154	0.00022342	0.53744	0.00026592	494.7931555427644	13.906	0.56048	13.906	13.63	14.191	0					34	19	3	0	0	0	0.01909	1	562	562		65.474	25.516	1	264350			20080	760	11361	11362	25247	25247					0.07701145334567627
KTISQAVNK	9	Unmodified	_KTISQAVNK_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENST00000495619.1_1_2:183822183-183829436:-|nuORF	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.79278564453125	2	494.792924	987.571294	0.04409	2.1815E-05	0.17556	8.6867E-05	0.21965	0.00010868	494.7928922897739	14.004	0.39113	13.899	13.658	14.049	-0.10466					27	13	3	0	0	0	0.0073901	1	588	588		83.429	27.252	1	294190			20081	760	11361	11362	25248	25248					0.07701145334567627
KTISQAVNK	9	Unmodified	_KTISQAVNK_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENST00000495619.1_1_2:183822183-183829436:-|nuORF	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7928771972656	2	494.792924	987.571294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.977	1	13.911	13.411	14.411	-0.066068								0	0	0	0.0079895	1	585	585		83.429	37.408	1				20082	760	11361	11362	25249	25249					0.07701145334567627
KTISVVLQL	9	Unmodified	_KTISVVLQL_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1;ENST00000595789.5_1_19:44056953-44079610:-|nuORF	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.794921875	2	500.823692	999.632832	0.1285	6.4358E-05	0.54766	0.00027428	0.67616	0.00033864	500.8237353996195	59.714	0.54403	59.714	59.353	59.897	0					27	18	2	0	0	0	0.22143	1	14603	14603		24.991	8.8419	1	267620			20083	995	11362	11363	25250	25250					0.13300077033864
KTIVFVETK	9	Unmodified	_KTIVFVETK_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF	ENSG00000108654|ENST00000225792|DDX5	ENSG00000108654|ENST00000225792|DDX5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.77392578125	2	532.82115	1063.62775	0.40632	0.0002165	0.059811	3.1869E-05	0.46613	0.00024836	532.8209751256203	31.169	0.45814	31.21	30.988	31.447	0.040989					37	16	3	0	0	0	0.194	1	5779	5779		34.222	5.7272	1	333430			20084	2205	11363	11364	25251	25251					0.09847773171213703
KTIVYEALK	9	Unmodified	_KTIVYEALK_					0	0	0			REV__nc|ENSG00000067798|Q8IVL0-3|NAV3	REV__nc|ENSG00000067798|Q8IVL0-3|NAV3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.774169921875	2	532.82115	1063.62775	0.31551	0.00016811	0.31162	0.00016604	0.62713	0.00033415	532.8211851587859	31.225	0.44307	31.225	31.033	31.476	0					36	15	3	0	0	0	0.17263	1	5802	5802		38.615	0.84342	1	349510	+		20085	13694	11364	11365	25252	25252					0.09847773171213703
KTIVYEALK	9	Unmodified	_KTIVYEALK_					0	0	0			REV__nc|ENSG00000067798|Q8IVL0-3|NAV3	REV__nc|ENSG00000067798|Q8IVL0-3|NAV3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.292724609375	2	532.82115	1063.62775	0.083617	4.4553E-05	0.66933	0.00035663	0.75295	0.00040119	532.8213375960672	31.164	0.40633	31.206	31.052	31.458	0.042364					32	14	3	0	0	0	0.21026	1	5785	5785		28.495	3.6129	1	302650	+		20086	13694	11364	11365	25253	25253					0.09847773171213703
KTKAEDVKK	9	Unmodified	_KTKAEDVKK_					0	0	0		nc|ENSG00000198863|Q96C34-2|RUNDC1;ENSG00000198863|ENST00000361677|RUNDC1	nc|ENSG00000198863|Q96C34-2|RUNDC1	nc|ENSG00000198863|Q96C34-2|RUNDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.8137817382812	2	523.813856	1045.61316	0.27629	0.00014472	-0.50255	-0.00026324	-0.22626	-0.00011852	523.8136056277002	18.018	0.51696	17.959	17.767	18.284	-0.058849					49	18	4	0	0	0	0.27726	1	1789	1789		12.241	0.74595	1	147360			20087	8146	11365	11366	25254	25254					0.0921770102308983
KTKDGVREV	9	Unmodified	_KTKDGVREV_					0	0	0		ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7981567382812	2	516.29583	1030.57711	0.0013107	6.7671E-07	0.011687	6.0337E-06	0.012997	6.7105E-06	516.2959061003268	12.913	0.33365	12.913	12.724	13.058	0					28	10	3	0	0	0	0.18022	1	258	258		37.075	10.807	1	889530			20088	865	11366	11367	25255	25255					0.06304243846238933
KTKDGVREV	9	Unmodified	_KTKDGVREV_					0	0	0		ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2960815429688	2	516.29583	1030.57711	-0.051331	-2.6502E-05	0.1762	9.097E-05	0.12487	6.4468E-05	516.2959846560201	12.974	0.36865	12.875	12.673	13.042	-0.099291					30	11	3	0	0	0	0.0030911	1	285	285		101.54	36.308	1	802780			20089	865	11366	11367	25256	25256					0.06304243846238933
KTKDGVREV	9	Unmodified	_KTKDGVREV_					0	0	0		ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2957763671875	2	516.29583	1030.57711	-0.072995	-3.7687E-05	1.697	0.00087614	1.624	0.00083845	516.2966831654323	13.278	0.4298	13.179	13.011	13.441	-0.099291					30	14	3	0	0	0	0.32638	1	340	340		4.897	1.3005	1	206540			20090	865	11366	11367	25257	25257					0.06304243846238933
KTKDGVREV	9	Unmodified	_KTKDGVREV_					0	0	0		ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2958984375	2	516.29583	1030.57711	-0.1858	-9.593E-05	0.24621	0.00012712	0.060409	3.1189E-05	516.2959943712051	12.947	0.37108	12.88	12.702	13.073	-0.067496					30	12	3	0	0	0	0.015027	2	274	274;320		71.708	19.44	1	820050			20091	865	11366	11367	25258;25259	25258					0.06304243846238933
KTKEEPSLPPS	11	Unmodified	_KTKEEPSLPPS_					0	0	0			REV__ENSG00000135541|ENST00000265602|AHI1	REV__ENSG00000135541|ENST00000265602|AHI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8274536132812	2	606.82716	1211.63977	0.10918	6.6255E-05	0.72275	0.00043858	0.83193	0.00050484	606.8274370657238	14.012	0.25991	13.907	13.763	14.023	-0.10466					18	8	3	0	0	0	0.45108	1	616	616		4.5289	0.33936	1	89301	+		20092	15748	11367	11368	25260	25260					0.042413451237507616
KTKEGVREV	9	Unmodified	_KTKEGVREV_					0	0	0		ENSG00000143878|ENST00000272233|RHOB;ENST00000473074.1_1_1:113244164-113245337:-|nuORF;ENSG00000155366|ENST00000339083|RHOC	ENSG00000143878|ENST00000272233|RHOB	ENSG00000143878|ENST00000272233|RHOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.30322265625	2	523.303655	1044.59276	0.13671	7.1539E-05	-0.4648	-0.00024323	-0.32809	-0.00017169	523.3033497592436	12.97	0.4122	12.97	12.815	13.227	0					34	14	4	0	0	0	0.083138	1	279	279		40.725	10.884	1	275360			20093	4554	11368	11369	25261	25261					0.07224530363282611
KTKEGVREV	9	Unmodified	_KTKEGVREV_					0	0	0		ENSG00000143878|ENST00000272233|RHOB;ENST00000473074.1_1_1:113244164-113245337:-|nuORF;ENSG00000155366|ENST00000339083|RHOC	ENSG00000143878|ENST00000272233|RHOB	ENSG00000143878|ENST00000272233|RHOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.30322265625	2	523.303655	1044.59276	0.10786	5.6443E-05	-0.10415	-5.4502E-05	0.0037098	1.9414E-06	523.3033869408124	13.04	0.51858	12.941	12.757	13.276	-0.099291					39	17	3	0	0	0	0.12765	1	302	302		34.222	6.9985	1	279920			20094	4554	11368	11369	25262	25262					0.07224530363282611
KTKEGVREV	9	Unmodified	_KTKEGVREV_					0	0	0		ENSG00000143878|ENST00000272233|RHOB;ENST00000473074.1_1_1:113244164-113245337:-|nuORF;ENSG00000155366|ENST00000339083|RHOC	ENSG00000143878|ENST00000272233|RHOB	ENSG00000143878|ENST00000272233|RHOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3034057617188	2	523.303655	1044.59276	0.041852	2.1901E-05	-0.48806	-0.00025541	-0.44621	-0.0002335	523.303046967023	12.997	0.69206	12.93	12.61	13.302	-0.067496					46	23	4	0	0	0	0.063898	1	292	292		47.732	3.7501	1	260950			20095	4554	11368	11369	25263	25263					0.07224530363282611
KTKESSEYLK	10	Unmodified	_KTKESSEYLK_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2594901-2597328:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.82763671875	2	606.82716	1211.63977	0.12537	7.6077E-05	0.6072	0.00036847	0.73257	0.00044454	606.8273597507334	13.913	0.25667	13.913	13.767	14.024	0					19	8	3	0	0	0	0.37297	1	574	574		8.4443	1.3426	1	86704			20096	3625	11369	11370	25264	25264					0.042413451237507616
KTKESSEYLK	10	Unmodified	_KTKESSEYLK_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2594901-2597328:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8274536132812	2	606.82716	1211.63977	0.10918	6.6255E-05	0.72275	0.00043858	0.83193	0.00050484	606.8274370657238	14.012	0.25991	13.907	13.763	14.023	-0.10466					18	8	3	0	0	0	0.32615	1	598	598		17.049	7.5046	1	89301			20097	3625	11369	11370	25265	25265					0.042413451237507616
KTKESSEYLK	10	Unmodified	_KTKESSEYLK_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000574210.5_1_17:2594901-2597328:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8278198242188	2	606.82716	1211.63977	-0.030353	-1.8419E-05	1.0841	0.00065786	1.0537	0.00063944	606.8276781481042	13.979	0.23441	13.913	13.802	14.037	-0.066068					12	7	2	0	0	0	0.34887	1	607	607		12.873	2.0731	1	72598			20098	3625	11369	11370	25266	25266					0.042413451237507616
KTKFLVPDHVN	11	Unmodified	_KTKFLVPDHVN_					0	0	0		MAP1LC3B2|p.L82Wfs*2|1|0.32|ENSG00000258102|chr12:116576185-116576185|G/-|frameshift_variant;ENSG00000101460|ENST00000360668|MAP1LC3A;nc|ENSG00000101460|Q9H492-2|MAP1LC3A;ENSG00000258102|ENST00000556529|MAP1LC3B2;ENSG00000140941|ENST00000268607|MAP1LC3B	MAP1LC3B2|p.L82Wfs*2|1|0.32|ENSG00000258102|chr12:116576185-116576185|G/-|frameshift_variant	MAP1LC3B2|p.L82Wfs*2|1|0.32|ENSG00000258102|chr12:116576185-116576185|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.3663940429688	2	649.366787	1296.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.09	1	104.09	103.59	104.59	0								0	0	0	0.37609	1	27641	27641		2.4985	0	1				20099	1703	11370	11371	25267	25267					0.0825303686854113
KTKIIYLFMLL	11	Unmodified	_KTKIIYLFMLL_					0	0	0			REV__nc|ENSG00000146842|Q96SK2-3|TMEM209	REV__nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.6207580566406	3	461.620849	1381.84072	0.25123	0.00011597	-0.28851	-0.00013318	-0.03728	-1.7209E-05	461.6207053755852	44.457	0.72999	44.526	44.249	44.979	0.068569					45	26	2	0	0	0	0.41517	1	9844	9844		9.2438	0	1	1149000	+		20100	16361	11371	11372	25268	25268					0.16506942906698896
KTKLEEALNL	10	Unmodified	_KTKLEEALNL_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8402099609375	2	579.840071	1157.66559	0.21477	0.00012453	0.01033	5.9896E-06	0.2251	0.00013052	579.8399705936251	23.116	0.65282	23.071	22.817	23.47	-0.044867					50	23	3	0	0	0	0.40532	1	3390	3390		2.4985	0	1	254430			20101	273	11372	11373	25269	25269					0.09306239366060254
KTKLHKSKEK	10	Unmodified	_KTKLHKSKEK_					0	0	0			REV__nc|ENSG00000085224|P46100-6|ATRX	REV__nc|ENSG00000085224|P46100-6|ATRX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.9222106933594	3	409.590828	1225.75066	-0.030002	-1.2289E-05	0.27337	0.00011197	0.24336	9.968E-05	409.5908740279458	95.673	0.7186	95.751	95.456	96.174	0.077408					110	58	3	0	0	0	0.32095	1	25584	25584		1.4551	0	1	359350	+		20102	13956	11373	11374	25270	25270					0.14681029622511232
KTKNWIIK	8	Unmodified	_KTKNWIIK_					0	0	0			REV__ENSG00000103353|ENST00000395878|UBFD1	REV__ENSG00000103353|ENST00000395878|UBFD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7981567382812	2	515.824027	1029.6335	-0.0091297	-4.7093E-06	-4.3409	-0.0022392	-4.3501	-0.0022439	515.8220295559026	12.917	0.18775	12.917	12.815	13.003	0					10	5	2	0	0	0	0.34198	1	258	258		10.824	2.2306	1	50974	+		20103	14368	11374	11375	25271	25271					0.11986916473551901
KTKWYHRYLGK	11	Unmodified	_KTKWYHRYLGK_					0	0	0		nc|ENSG00000143297|Q96RD9-2|FCRL5;ENST00000481082.1_1_1:157516005-157522170:-|nuORF;nc|ENSG00000143297|Q96RD9-5|FCRL5;nc|ENSG00000143297|Q96RD9-4|FCRL5;nc|ENSG00000143297|Q96RD9-3|FCRL5;ENSG00000143297|ENST00000361835|FCRL5	nc|ENSG00000143297|Q96RD9-2|FCRL5	nc|ENSG00000143297|Q96RD9-2|FCRL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7802734375	3	493.945494	1478.81465	0.33237	0.00016417	-1.8788	-0.00092803	-1.5464	-0.00076386	494.27962051684915	26.59	0.84823	26.552	26.235	27.083	-0.038671					56	29	3	0	0	0	0.3325	1	4426	4426		2.2527	0	1	334870			20104	4498	11375	11376	25272	25272					0.09439809779428288
KTLATQRR	8	Unmodified	_KTLATQRR_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;ENST00000548578.1_1_12:56999598-57000129:-|nuORF	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.2988586425781	2	487.298707	972.582862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.949	1	81.925	81.425	82.425	-0.02404								0	0	0	0.34957	1	21352	21352		14.838	3.198	1				20105	1058	11376	11377	25273	25273					0.09547387148563757
KTLAYRGFIFK	11	Unmodified	_KTLAYRGFIFK_					0	0	0		nc|ENSG00000117419|O43414-3|ERI3;nc|ENSG00000117419|O43414-2|ERI3;ENSG00000117419|ENST00000372257|ERI3	nc|ENSG00000117419|O43414-3|ERI3	nc|ENSG00000117419|O43414-3|ERI3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.5992431640625	3	448.599324	1342.77614	0.30346	0.00013613	-0.61171	-0.00027441	-0.30825	-0.00013828	448.5991011744527	43.678	0.58341	43.762	43.492	44.075	0.083992					63	21	4	0	0	0	0.26738	1	9599	9599		25.155	10.317	1	894190			20106	2793	11377	11378	25274	25274					0.11846504144909886
KTLAYRGFIFK	11	Unmodified	_KTLAYRGFIFK_					0	0	0		nc|ENSG00000117419|O43414-3|ERI3;nc|ENSG00000117419|O43414-2|ERI3;ENSG00000117419|ENST00000372257|ERI3	nc|ENSG00000117419|O43414-3|ERI3	nc|ENSG00000117419|O43414-3|ERI3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	448.599324	1342.77614	0.1645	7.3796E-05	-0.29179	-0.0001309	-0.12729	-5.7101E-05	448.59922152339124	44.008	0.56275	44.008	43.767	44.33	0	0.17101	0.00028127	NaN	25.155	54	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1066300			20107	2793	11377	11378							0.11846504144909886
KTLAYRGFIFK	11	Unmodified	_KTLAYRGFIFK_					0	0	0		nc|ENSG00000117419|O43414-3|ERI3;nc|ENSG00000117419|O43414-2|ERI3;ENSG00000117419|ENST00000372257|ERI3	nc|ENSG00000117419|O43414-3|ERI3	nc|ENSG00000117419|O43414-3|ERI3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	448.599324	1342.77614	0.21626	9.7013E-05	-0.55469	-0.00024883	-0.33843	-0.00015182	448.59910175828105	43.664	0.67471	43.741	43.453	44.128	0.077515	-0.095722	-7.2546E-05	NaN	25.155	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	958030			20108	2793	11377	11378							0.11846504144909886
KTLDAEVVEK	10	Unmodified	_KTLDAEVVEK_					0	0	0		nc|ENSG00000185049|Q9H3P2-7|NELFA;ENST00000467661.5_1_4:1985048-1988196:-|nuORF;ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF	nc|ENSG00000185049|Q9H3P2-7|NELFA	nc|ENSG00000185049|Q9H3P2-7|NELFA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.3161010742188	2	566.316428	1130.6183	0.1653	9.3611E-05	1.4356	0.00081299	1.6009	0.0009066	566.3162411431409	25.355	0.68921	25.355	24.902	25.591	0					49	23	3	0	0	0	0.017634	1	4028	4028		74.306	40.862	1	306080			20109	7503	11378	11379	25275	25275					0.05821960095045142
KTLDDLKCK	9	Unmodified	_KTLDDLKCK_					0	0	0		nc|ENSG00000284762|O95263-2|PDE8B;nc|ENSG00000284762|O95263-3|PDE8B;nc|ENSG00000284762|O95263-6|PDE8B;ENSG00000113231|ENST00000264917|PDE8B;nc|ENSG00000284762|O95263-5|PDE8B;nc|ENSG00000284762|O95263-4|PDE8B	nc|ENSG00000284762|O95263-2|PDE8B	nc|ENSG00000284762|O95263-2|PDE8B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8245849609375	2	532.294442	1062.57433	0.80549	0.00042876	0.36535	0.00019447	1.1708	0.00062323	532.2945025598327	20.382	0.34732	20.329	20.151	20.499	-0.05291					16	12	2	0	0	0	0.2524	1	2492	2492		11.495	2.7493	1	112600			20110	2481	11379	11380	25276	25276					0.045546523970415365
KTLDEILQEKK	11	Unmodified	_KTLDEILQEKK_					0	0	0		nc|ENSG00000248333|P21127|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A	nc|ENSG00000248333|P21127|CDK11B	nc|ENSG00000248333|P21127|CDK11B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.77691650390625	3	448.929287	1343.76603	0.068097	3.0571E-05	-1.5894	-0.00071351	-1.5213	-0.00068294	448.9284119119537	33.414	0.55452	33.48	33.215	33.77	0.066704					34	19	3	0	0	0	0.32702	1	6502	6502		16.137	1.2993	1	231320			20111	388	11380	11381	25277	25277					0.10789851629010627
KTLDPDPAIRR	11	Unmodified	_KTLDPDPAIRR_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.91387939453125	3	427.913971	1280.72008	-0.21089	-9.0242E-05	0.1065	4.5572E-05	-0.10439	-4.467E-05	427.91396978908574	23.801	0.71407	23.801	23.48	24.194	0					69	24	4	0	0	0	0.17299	1	3548	3548		33.632	25.188	1	418120			20112	3141	11381	11382	25278	25278					0.09095251237431512
KTLDPDPAIRR	11	Unmodified	_KTLDPDPAIRR_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.9137878417969	3	427.913971	1280.72008	-0.13219	-5.6567E-05	-0.17969	-7.6891E-05	-0.31188	-0.00013346	427.91388397631454	23.93	0.88507	23.858	23.474	24.359	-0.072559					75	29	4	0	0	0	0.29852	1	3595	3595		30.354	24.12	1	371010			20113	3141	11381	11382	25279	25279					0.09095251237431512
KTLDPDPAIRR	11	Unmodified	_KTLDPDPAIRR_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.91375732421875	3	427.913971	1280.72008	0.023341	9.9881E-06	-0.18628	-7.9713E-05	-0.16294	-6.9725E-05	427.9138255478706	23.946	0.88451	23.907	23.534	24.418	-0.038927					83	30	4	0	0	0	0.14667	1	3598	3598		35.996	28.05	1	431110			20114	3141	11381	11382	25280	25280					0.09095251237431512
KTLDQAKAVLK	11	Unmodified	_KTLDQAKAVLK_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.911865234375	3	405.587084	1213.73942	-0.11095	-4.5E-05	0.43372	0.00017591	0.32277	0.00013091	405.5872541148646	24.842	0.98478	24.842	24.548	25.533	0					86	33	4	0	0	0	0.33236	1	3922	3922		4.4062	1.0865	1	810570			20115	3868	11382	11383	25281	25281					0.14110207528347019
KTLDSALFY	9	Unmodified	_KTLDSALFY_					0	0	0		ENSG00000162402|ENST00000294383|USP24;ENST00000512504.1_1_1:55549560-55551824:-|nuORF	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2819213867188	2	529.281857	1056.54916	0.77237	0.0004088	-0.27386	-0.00014495	0.49851	0.00026385	529.2816447090888	54.343	1.349	54.343	53.542	54.891	0					84	49	4	0	0	0	0.01909	2	12927	12875;12927		65.474	29.347	1	1882200			20116	5566	11383	11384	25282;25283	25283					0.023149208661379816
KTLDSALFY	9	Unmodified	_KTLDSALFY_					0	0	0		ENSG00000162402|ENST00000294383|USP24;ENST00000512504.1_1_1:55549560-55551824:-|nuORF	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2819213867188	2	529.281857	1056.54916	0.64054	0.00033902	-0.024842	-1.3148E-05	0.61569	0.00032588	529.2817793708966	54.298	0.70666	54.361	53.96	54.667	0.063202					60	26	3	0	0	0	0.026579	2	12857	12857;12908		61.602	25.475	1	1754100			20117	5566	11383	11384	25284;25285	25284					0.023149208661379816
KTLDSALFY	9	Unmodified	_KTLDSALFY_					0	0	0		ENSG00000162402|ENST00000294383|USP24;ENST00000512504.1_1_1:55549560-55551824:-|nuORF	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2821655273438	2	529.281857	1056.54916	0.74427	0.00039393	-0.19456	-0.00010298	0.54971	0.00029095	529.2816439997108	54.596	0.83648	54.58	54.143	54.98	-0.015923					68	29	3	0	0	0	0.026579	2	12992	12946;12992		61.602	25.475	1	1805600			20118	5566	11383	11384	25286;25287	25287					0.023149208661379816
KTLFVEFTD	9	Unmodified	_KTLFVEFTD_					0	0	0		ENSG00000185010|ENST00000360256|F8	ENSG00000185010|ENST00000360256|F8	ENSG00000185010|ENST00000360256|F8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2689819335938	2	550.28714	1098.55973	0.4756	0.00026171	-0.052577	-2.8932E-05	0.42302	0.00023278	550.2871154698385	39.268	0.79778	39.367	39.046	39.844	0.099403					61	28	3	0	0	0	0.15219	1	8201	8201		30.637	10.183	1	821150			20119	7496	11384	11385	25288	25288					0.01438903520556778
KTLGASAGPPR	11	Unmodified	_KTLGASAGPPR_					0	0	0			REV__nc|ENSG00000141258|O43147-5|SGSM2	REV__nc|ENSG00000141258|O43147-5|SGSM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3200073242188	2	527.803823	1053.59309	0.62958	0.00033229	-2.7431	-0.0014478	-2.1135	-0.0011155	527.8012942162208	26.817	0.27733	26.805	26.651	26.928	-0.01156					11	9	2	0	0	0	0.37585	1	4491	4491		14.405	0.49933	1	35143	+		20120	16068	11385	11386	25289	25289					0.06843950083134587
KTLHSQVK	8	Unmodified	_KTLHSQVK_					0	0	0		ENSG00000143867|ENST00000272223|OSR1	ENSG00000143867|ENST00000272223|OSR1	ENSG00000143867|ENST00000272223|OSR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.22003173828125	2	470.782359	939.550165	-0.13646	-6.4244E-05	-0.018324	-8.6266E-06	-0.15479	-7.287E-05	470.7824418552623	18.971	0.80902	18.971	18.738	19.547	0					76	28	4	0	0	0	0.29394	1	2101	2101		36.127	0	1	506860			20121	4553	11386	11387	25290	25290					0.07797180025715988
KTLHSQVK	8	Unmodified	_KTLHSQVK_					0	0	0		ENSG00000143867|ENST00000272223|OSR1	ENSG00000143867|ENST00000272223|OSR1	ENSG00000143867|ENST00000272223|OSR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.21990966796875	2	470.782359	939.550165	0.037493	1.7651E-05	-0.16127	-7.5922E-05	-0.12378	-5.8271E-05	470.7823743718135	19.101	0.80477	19.044	18.764	19.569	-0.057207					73	27	4	0	0	0	0.30499	1	2128	2128		32.786	6.5175	1	504070			20122	4553	11386	11387	25291	25291					0.07797180025715988
KTLLHGKHER	10	Unmodified	_KTLLHGKHER_					0	0	0		ENSG00000142556|ENST00000270649|ZNF614	ENSG00000142556|ENST00000270649|ZNF614	ENSG00000142556|ENST00000270649|ZNF614	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.9066162109375	3	406.907039	1217.69929	-0.43158	-0.00017561	-0.30598	-0.00012451	-0.73757	-0.00030012	406.9067489510728	12.29	0.17785	12.29	12.219	12.397	0					12	5	3	0	0	0	0.40085	1	96	96		3.3196	0.47636	1	43088			20123	4452	11387	11388	25292	25292					0.0991470564847532
KTLPFYKDYF	10	Unmodified	_KTLPFYKDYF_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7874450683594	3	441.232418	1320.67542	0.34871	0.00015386	1.734	0.00076509	2.0827	0.00091895	441.23302204250535	33.84	1.5167	33.84	33.039	34.556	0					116	54	3	0	0	0	0.31994	1	6526	6526		1.4551	0.24029	1	546530			20124	4363	11388	11389	25293	25293					0.02791427371403188
KTLQGTLL	8	Unmodified	_KTLQGTLL_					0	0	0		ENSG00000269743|ENST00000594199|SLC25A53	ENSG00000269743|ENST00000594199|SLC25A53	ENSG00000269743|ENST00000594199|SLC25A53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.587158203125	2	437.273835	872.533118	-0.1676	-7.3287E-05	0.65079	0.00028458	0.48319	0.00021129	437.2741530480025	16.554	0.50134	16.44	16.166	16.667	-0.11434					29	17	2	0	0	0	0.34438	1	1319	1319		0.6015	0	1	30158			20125	8692	11389	11390	25294	25294					0.09175259419919257
KTLSAILRI	9	Unmodified	_KTLSAILRI_					0	0	0		ENST00000476007.2_3_3:58293695-58303220:+|nuORF;ENST00000461393.5_1_3:58292349-58303220:+|nuORF;ENSG00000163684|ENST00000295959|RPP14;ENST00000481972.5_1_3:58292052-58303220:+|nuORF;ENST00000477305.5_1_3:58292052-58303220:+|nuORF	ENST00000476007.2_3_3:58293695-58303220:+|nuORF	ENST00000476007.2_3_3:58293695-58303220:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.3021545410156	2	507.837134	1013.65972	0.28663	0.00014556	-0.57944	-0.00029426	-0.29281	-0.0001487	507.83678727044577	48.998	0.48991	49.042	48.935	49.425	0.044891					24	17	2	0	0	0	0.22143	1	11283	11283		19.362	0.10495	1	378980			20126	5720	11390	11391	25295	25295					0.153431856450311
KTLTEEGINNK	11	Unmodified	_KTLTEEGINNK_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.83544921875	2	623.835517	1245.65648	0.18111	0.00011298	0.17897	0.00011165	0.36007	0.00022463	623.8355537989165	19.574	0.52838	19.574	19.294	19.822	0					38	18	3	0	0	0	0.45605	1	2285	2285		3.8763	1.7903	1	77760			20127	3395	11391	11392	25296	25296					0.04347846009704881
KTLTEEGINNK	11	Unmodified	_KTLTEEGINNK_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.90350341796875	3	416.226103	1245.65648	-0.18027	-7.5031E-05	0.84265	0.00035073	0.66239	0.0002757	416.2263895385229	19.507	0.61109	19.507	19.294	19.905	0					37	21	2	0	0	0	0.32985	1	2258	2258		8.2081	1.5847	1	143520			20128	3395	11391	11392	25297	25297					0.04347846009704881
KTLTEEGINNK	11	Unmodified	_KTLTEEGINNK_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.8358154296875	2	623.835517	1245.65648	0.055683	3.4737E-05	0.35353	0.00022055	0.40922	0.00025528	623.8357359695718	19.744	0.52822	19.628	19.341	19.869	-0.11592					29	17	2	0	0	0	0.44153	1	2352	2352		5.7834	3.2849	1	85983			20129	3395	11391	11392	25298	25298					0.04347846009704881
KTLTEEGINNK	11	Unmodified	_KTLTEEGINNK_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.8355102539062	2	623.835517	1245.65648	0.23403	0.000146	0.003282	2.0475E-06	0.23732	0.00014805	623.8353860016053	19.62	0.53481	19.565	19.369	19.904	-0.055693					33	18	3	0	0	0	0.38765	1	2285	2285		12.856	4.4116	1	91085			20130	3395	11391	11392	25299	25299					0.04347846009704881
KTLTEEGINNK	11	Unmodified	_KTLTEEGINNK_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.9034423828125	3	416.226103	1245.65648	0.24393	0.00010153	0.85572	0.00035617	1.0997	0.00045771	416.22628904906867	19.604	0.59262	19.548	19.337	19.93	-0.055693					37	20	2	0	0	0	0.3256	1	2294	2294		18.853	12.229	1	180850			20131	3395	11391	11392	25300	25300					0.04347846009704881
KTNSFVVTV	9	Unmodified	_KTNSFVVTV_					0	0	0			REV__ENST00000505202.5_1_5:36607109-36608519:+|nuORF	REV__ENST00000505202.5_1_5:36607109-36608519:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.76947021484375	2	497.782025	993.549496	0.34791	0.00017318	-0.38739	-0.00019284	-0.039484	-1.9654E-05	497.78191029418844	19.53	0.45136	19.474	19.253	19.705	-0.055693					26	15	2	0	0	0	0.33508	1	2307	2307		3.5965	0	1	67602	+		20132	21735	11392	11393	25301	25301					0.05246340585995313
KTNVKFLAI	9	Unmodified	_KTNVKFLAI_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.323974609375	2	517.32386	1032.63317	0.33514	0.00017337	-0.1106	-5.7214E-05	0.22454	0.00011616	517.3238318342062	43.581	0.78293	43.581	43.307	44.09	0					66	28	4	0	0	0	0.0098873	1	9590	9590		79.596	31.848	1	1971900			20133	6239	11393	11394	25302	25302					0.11815496753706611
KTNVKFLAI	9	Unmodified	_KTNVKFLAI_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3240356445312	2	517.32386	1032.63317	0.4448	0.0002301	-0.18394	-9.5158E-05	0.26085	0.00013495	517.323793739739	43.362	0.68373	43.44	43.206	43.89	0.077515					60	24	4	0	0	0	0.0028542	1	9496	9496		103.42	45.697	1	2334000			20134	6239	11393	11394	25303	25303					0.11815496753706611
KTNVKFLAI	9	Unmodified	_KTNVKFLAI_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.3241577148438	2	517.32386	1032.63317	0.31929	0.00016518	-0.15143	-7.8339E-05	0.16786	8.6837E-05	517.3238180651618	43.323	0.75056	43.407	43.166	43.917	0.083992					70	27	4	0	0	0	0.0019475	1	9488	9488		110.67	56.842	1	2003000			20135	6239	11393	11394	25304	25304					0.11815496753706611
KTPATRRTA	9	Unmodified	_KTPATRRTA_					0	0	0		ENST00000514708.5_1_4:1309356-1332271:+|nuORF	ENST00000514708.5_1_4:1309356-1332271:+|nuORF	ENST00000514708.5_1_4:1309356-1332271:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7986755371094	2	501.296165	1000.57778	0.58429	0.0002929	-3.5597	-0.0017845	-2.9754	-0.0014916	502.2999189650962	84.677	0.73708	84.677	84.278	85.015	0					52	27	3	0	0	0	0.20167	1	22131	22131		29.082	9.8246	1	105900			20136	11417	11394	11395	25305	25305					0.07751083285927507
KTPICKFLR	9	Unmodified	_KTPICKFLR_					0	0	0		ENST00000472038.1_1_1:167599603-167633027:+|nuORF	ENST00000472038.1_1_1:167599603-167633027:+|nuORF	ENST00000472038.1_1_1:167599603-167633027:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3323974609375	2	553.331162	1104.64777	0.4555	0.00025204	1.4716	0.00081427	1.9271	0.0010663	553.3324123249081	86.696	1.3796	86.69	86.237	87.617	-0.0056229					150	59	4	0	0	0	0.33276	1	22777	22777		3.9444	3.9444	1	1283700			20137	10887	11395	11396	25306	25306					0.09963245630183337
KTPITSNRK	9	Unmodified	_KTPITSNRK_					0	0	0			REV__nc|ENSG00000204389|P0DMV8-2|HSPA1A	REV__nc|ENSG00000204389|P0DMV8-2|HSPA1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8117065429688	2	522.811648	1043.60874	0.65834	0.00034419	0.60079	0.0003141	1.2591	0.00065828	522.8114964029954	86.243	1.2347	86.243	85.791	87.025	0					144	47	4	0	0	0	0.26612	1	22746	22746		13.906	2.2658	1	1924700	+		20138	18938	11396	11397	25307	25307					0.08868236600164892
KTPKKCKFSK	10	Unmodified	_KTPKKCKFSK_					0	0	0			REV__ENSG00000283644|ENST00000635820|ETDC	REV__ENSG00000283644|ENST00000635820|ETDC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8560180664062	2	597.855001	1193.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.676	1	93.675	93.175	94.175	-0.00051117								0	0	0	0.37355	1	24955	24955		4.897	1.6157	1		+		20139	19369	11397	11398	25308	25308					0.10634899830370159
KTPLAPLAP	9	Unmodified	_KTPLAPLAP_					0	0	0		ENSG00000134369|ENST00000685211|NAV1;nc|ENSG00000134369|Q8NEY1-6|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1	ENSG00000134369|ENST00000685211|NAV1	ENSG00000134369|ENST00000685211|NAV1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.283935546875	2	454.284203	906.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.801	1	88.89	88.39	89.39	0.089195								0	0	0	0.264	1	23465	23465		1.8442	0	1				20140	3779	11398	11399	25309	25309					0.09683849799546351
KTPLPKIRKYI	11	Unmodified	_KTPLPKIRKYI_					0	0	0			REV__nc|ENSG00000004487|O60341|KDM1A	REV__nc|ENSG00000004487|O60341|KDM1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.776611328125	3	452.962374	1355.86529	-0.61774	-0.00027981	0.93653	0.00042421	0.3188	0.0001444	453.2971596435676	34.626	0.77964	34.704	34.474	35.254	0.077377					60	27	3	0	0	0	0.3331	1	6890	6890		1.0136	0.088041	1	260370	+		20141	13331	11399	11400	25310	25310					0.20159339104452556
KTPMNKVI	8	Unmodified	_KTPMNKVI_					0	0	0			REV__nc|ENSG00000111837|P20794-3|MAK	REV__nc|ENSG00000111837|P20794-3|MAK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.777587890625	2	465.775688	929.536823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.12	1	73.091	72.591	73.591	-0.029305								0	0	0	0.35663	1	18659	18659		11.64	0	1		+		20142	14741	11400	11401	25311	25311					0.06923605922111165
KTPPKCVCSL	10	Unmodified	_KTPPKCVCSL_					0	0	0		nc|ENSG00000254852|F8WFD2|NPIPA3;ENSG00000254852|ENST00000529166|NPIPA2;ENSG00000224712|ENST00000531598|NPIPA3	nc|ENSG00000254852|F8WFD2|NPIPA3	nc|ENSG00000254852|F8WFD2|NPIPA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.80078125	2	538.285563	1074.55657	0.20136	0.00010839	0.11088	5.9684E-05	0.31224	0.00016807	538.2855557779615	15.805	0.35181	15.695	15.491	15.842	-0.10981					18	11	2	0	0	0	0.32123	1	1183	1183		1.6526	1.6526	1	26744			20143	8443	11401	11402	25312	25312					0.02227613870559253
KTPQGRQV	8	Unmodified	_KTPQGRQV_					0	0	0		SMARCC2|p.K585Rfs*72|1|0.33|ENSG00000139613|chr12:56172601-56172601|T/-|frameshift_variant;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2	SMARCC2|p.K585Rfs*72|1|0.33|ENSG00000139613|chr12:56172601-56172601|T/-|frameshift_variant	SMARCC2|p.K585Rfs*72|1|0.33|ENSG00000139613|chr12:56172601-56172601|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.264404296875	2	457.264333	912.514114	0.23629	0.00010805	-0.064452	-2.9471E-05	0.17184	7.8577E-05	457.26421229697945	73.058	1.9871	73.028	72.657	74.644	-0.029305					175	71	4	0	0	0	0.44389	1	18759	18759		7.9102	0.62092	1	2046400			20144	4247	11402	11403	25313	25313					0.05435722848858404
KTPQPPQPS	9	Unmodified	_KTPQPPQPS_					0	0	0			REV__ENSG00000164061|ENST00000296452|BSN	REV__ENSG00000164061|ENST00000296452|BSN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.257080078125	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.36	1	94.36	93.86	94.86	0								0	0	0	0.2489	1	25165	25165		6.7232	1.9672	1		+		20145	17120	11403	11404	25314	25314					0.023328834091330464
KTPQPPQPS	9	Unmodified	_KTPQPPQPS_					0	0	0			REV__ENSG00000164061|ENST00000296452|BSN	REV__ENSG00000164061|ENST00000296452|BSN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2578125	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.079	1	94.165	93.665	94.665	0.08667								0	0	0	0.2489	1	25079	25079		6.7232	0	1		+		20146	17120	11403	11404	25315	25315					0.023328834091330464
KTPQPPQPS	9	Unmodified	_KTPQPPQPS_					0	0	0			REV__ENSG00000164061|ENST00000296452|BSN	REV__ENSG00000164061|ENST00000296452|BSN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.25616455078125	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.088	1	94.175	93.675	94.675	0.08667								0	0	0	0.24066	1	25082	25082		9.3831	2.0939	1		+		20147	17120	11403	11404	25316	25316					0.023328834091330464
KTPQPPQPS	9	Unmodified	_KTPQPPQPS_					0	0	0			REV__ENSG00000164061|ENST00000296452|BSN	REV__ENSG00000164061|ENST00000296452|BSN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2560119628906	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.178	1	94.177	93.677	94.677	-0.00051117								0	0	0	0.25197	1	25109	25109		5.7319	1.4026	1		+		20148	17120	11403	11404	25317	25317					0.023328834091330464
KTPRCVVV	8	Unmodified	_KTPRCVVV_					0	0	0		nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3	nc|ENSG00000164796|Q7Z407-4|CSMD3	nc|ENSG00000164796|Q7Z407-4|CSMD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.93280029296875	2	451.26803	900.521507	0.21742	9.8116E-05	3.1157	0.001406	3.3331	0.0015041	451.26886317965386	90.39	0.047318	90.481	90.456	90.503	0.090675					5	3	2	0	0	0	0.34337	1	23951	23951		5.2307	0	1	33260			20149	5877	11404	11405	25318	25318					0.06726739124917458
KTPSAQRR	8	Unmodified	_KTPSAQRR_					0	0	0			REV__ENST00000481972.5_1_3:58292052-58303220:+|nuORF	REV__ENST00000481972.5_1_3:58292052-58303220:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2650451660156	2	472.275232	942.535912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.309	1	91.4	90.9	91.9	0.090668								0	0	0	0.37183	1	24231	24231		4.756	0	1		+		20150	21435	11405	11406	25319	25319					0.062345275974166725
KTPSVRHH	8	Unmodified	_KTPSVRHH_					0	0	0		L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|82|2|sense	L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|82|2|sense	L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|82|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2843933105469	2	481.26995	960.525347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.569	1	90.659	90.159	91.159	0.090668								0	0	0	0.37078	1	24002	24002		5.2307	0.47466	1				20151	12484	11406	11407	25320	25320					0.043505449429858345
KTPSVRHH	8	Unmodified	_KTPSVRHH_					0	0	0		L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|82|2|sense	L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|82|2|sense	L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|82|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2832946777344	2	481.26995	960.525347	0.40399	0.00019443	1.4439	0.00069493	1.8479	0.00088936	481.27055818177945	90.674	0.24117	90.675	90.487	90.728	0.0003891					26	17	2	0	0	0	0.45169	1	24044	24044		5.2307	0.47466	1	72027			20152	12484	11406	11407	25321	25321					0.043505449429858345
KTPVEVPVG	9	Unmodified	_KTPVEVPVG_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2835998535156	2	463.271293	924.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.458	1	88.548	88.048	89.048	0.089195								0	0	0	0.25631	1	23362	23362		4.3292	0.38484	1				20153	12859	11407	11408	25322	25322					0.06274955557285011
KTPVEVPVG	9	Unmodified	_KTPVEVPVG_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2834167480469	2	463.271293	924.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89	1	89.09	88.59	89.59	0.090569								0	0	0	0.25631	1	23526	23526		4.3292	0.38484	1				20154	12859	11407	11408	25323	25323					0.06274955557285011
KTPVQAGRG	9	Unmodified	_KTPVQAGRG_					0	0	0		ENST00000408959.2_1_3:48955513-48955681:-|nuORF	ENST00000408959.2_1_3:48955513-48955681:-|nuORF	ENST00000408959.2_1_3:48955513-48955681:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.26409912109375	2	457.264333	912.514114	0.094187	4.3068E-05	0.14049	6.4242E-05	0.23468	0.00010731	457.2642918314604	73.069	2.092	73.069	72.639	74.731	0					160	73	4	0	0	0	0.31417	1	19001	19001		6.7232	0.36906	1	2003800			20155	10235	11408	11409	25324	25324					0.05435722848858404
KTQAIAKQP	9	Unmodified	_KTQAIAKQP_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.27294921875	2	492.795466	983.57638	0.24069	0.00011861	-1.2252	-0.00060379	-0.98454	-0.00048518	492.79465479904025	16.314	0.56597	16.314	16.123	16.689	0					27	19	2	0	0	0	0.25066	1	1306	1306		11.64	0.81637	1	74157			20156	3835	11409	11410	25325	25325					0.08393449197160407
KTQDLFRRV	9	Unmodified	_KTQDLFRRV_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.838134765625	2	581.838197	1161.66184	-0.053519	-3.1139E-05	0.42892	0.00024956	0.37541	0.00021843	581.838474398725	27.912	0.59831	27.912	27.643	28.241	0					47	20	3	0	0	0	0.18208	2	4780	4780;4827		26.268	14.773	1	450390			20157	2591	11410	11411	25326;25327	25326					0.0874761438283258
KTQDLFRRV	9	Unmodified	_KTQDLFRRV_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.838623046875	2	581.838197	1161.66184	-0.057161	-3.3258E-05	0.47762	0.0002779	0.42046	0.00024464	581.8385237553761	27.895	0.58881	27.891	27.658	28.247	-0.0042572					49	20	3	0	0	0	0.18208	2	4789	4789;4837		26.268	14.773	1	502560			20158	2591	11410	11411	25328;25329	25328					0.0874761438283258
KTQDLFRRV	9	Unmodified	_KTQDLFRRV_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.8380737304688	2	581.838197	1161.66184	-0.11603	-6.7508E-05	0.56313	0.00032765	0.44711	0.00026014	581.8384409069149	27.877	0.61543	27.878	27.626	28.242	0.00046921					47	21	3	0	0	0	0.13748	2	4769	4769;4822		32.786	16.637	1	410180			20159	2591	11410	11411	25330;25331	25330					0.0874761438283258
KTQKDVIS	8	Unmodified	_KTQKDVIS_					0	0	0		ENSG00000065613|ENST00000369755|SLK;nc|ENSG00000065613|Q9H2G2-2|SLK;SLK|p.Q919Efs*10|1|0.1|ENSG00000065613|chr10:104008326-104008336|TCAGAATATGC/-|frameshift_variant	ENSG00000065613|ENST00000369755|SLK	ENSG00000065613|ENST00000369755|SLK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7663269042969	2	459.766374	917.518196	-0.27888	-0.00012822	0.31018	0.00014261	0.031301	1.4391E-05	459.76645260968326	13.041	1.0888	13.041	12.874	13.962	0					88	38	4	0	0	0	0.45544	1	397	397		3.9444	0	1	554190			20160	820	11411	11412	25332	25332					0.056137675519039476
KTQLERPL	8	Unmodified	_KTQLERPL_					0	0	0		ENST00000509525.5_1_5:132534789-132560973:-|nuORF	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.27288818359375	2	492.795466	983.57638	0.27301	0.00013454	-1.3936	-0.00068677	-1.1206	-0.00055223	492.79466046304634	16.344	0.52474	16.281	16.121	16.646	-0.062534					23	17	2	0	0	0	0.34272	1	1309	1309		7.9102	0	1	87143			20161	11359	11412	11413	25333	25333					0.08393449197160407
KTQLKLGNL	9	Unmodified	_KTQLKLGNL_					0	0	0			REV__nc|ENSG00000196361|Q14576-2|ELAVL3	REV__nc|ENSG00000196361|Q14576-2|ELAVL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.81884765625	2	507.818941	1013.62333	-0.022159	-1.1253E-05	-0.027889	-1.4163E-05	-0.050048	-2.5415E-05	507.81885541785044	13.041	0.32845	13.041	12.925	13.254	0					24	11	3	0	0	0	0.33276	1	319	319		3.9444	0.3479	1	120360	+		20162	18642	11413	11414	25334	25334					0.1170630874833023
KTQNFLIQK	9	Unmodified	_KTQNFLIQK_					0	0	0		ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3296508789062	2	560.329673	1118.64479	0.051201	2.869E-05	-0.3498	-0.000196	-0.2986	-0.00016731	560.3295447250661	27.653	0.39397	27.631	27.382	27.776	-0.021412					21	13	2	0	0	0	0.2869	1	4738	4738		10.8	5.0677	1	94107			20163	4467	11414	11415	25335	25335					0.09021693777026485
KTQNFLIQK	9	Unmodified	_KTQNFLIQK_					0	0	0		ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.329673	1118.64479	0.04828	2.7053E-05	-0.46452	-0.00026029	-0.41624	-0.00023323	560.3295440206172	27.624	0.34836	27.624	27.441	27.789	0	0.018731	-0.00015793	NaN	10.8	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72831			20164	4467	11414	11415							0.09021693777026485
KTQNFLIQK	9	Unmodified	_KTQNFLIQK_					0	0	0		ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	560.329673	1118.64479	-0.060238	-3.3753E-05	-0.20767	-0.00011636	-0.26791	-0.00015012	560.329643412923	27.572	0.2647	27.56	27.438	27.703	-0.011562	-0.044954	0.00012991	NaN	10.8	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108980			20165	4467	11414	11415							0.09021693777026485
KTQPPVAYQ	9	Unmodified	_KTQPPVAYQ_					0	0	0		HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|123|3|sense;nc|ENSG816|P62685|ERVK-8_gag;nc|ENSG846|Q9YNA8|ERVK-19_gag;nc|ENSG841|P62683|ERVK-21_gag;nc|ENSG838|P63145|ERVK-24_gag;nc|ENSG827|Q7LDI9|ERVK-6_gag;nc|ENSG820|P63130|ERVK-7_gag;nc|ENSG810|P63126|ERVK-9_gag;nc|ENSG800|P62684|HERVK_113_gag;HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|126|3|sense;nc|ENSG809|P63128|ERVK-9_pol;nc|ENSG829|Q9HDB9|ERVK-5_gag	HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|123|3|sense	HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|123|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2958374023438	2	516.279649	1030.54475	-0.002551	-1.317E-06	-2.7027	-0.0013954	-2.7053	-0.0013967	516.2784745980613	12.83	0.17589	12.83	12.724	12.9	0					9	5	2	0	0	0	0.19747	1	261	261		24.021	5.8742	1	41083			20166	12406	11415	11416	25336	25336					0.03069456443222407
KTQPTSLPK	9	Unmodified	_KTQPTSLPK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.6715393066406	2	500.295299	998.576045	0.18907	9.4589E-05	0.41677	0.00020851	0.60583	0.0003031	500.29537645838707	16.034	0.72711	16.034	15.734	16.461	0					52	25	3	0	0	0	0.23216	1	1190	1190		22.658	3.2961	1	125220			20167	638	11416	11417	25337	25337					0.07670029477321805
KTQPTSLPK	9	Unmodified	_KTQPTSLPK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.295654296875	2	500.295299	998.576045	0.15007	7.5077E-05	0.58188	0.00029111	0.73195	0.00036619	500.2955072016783	16.142	0.6764	16.027	15.718	16.395	-0.11434					53	22	3	0	0	0	0.22143	1	1251	1251		24.991	4.5764	1	168060			20168	638	11416	11417	25338	25338					0.07670029477321805
KTQPTSLPK	9	Unmodified	_KTQPTSLPK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7187194824219	2	500.295299	998.576045	0.20881	0.00010447	0.50698	0.00025364	0.71579	0.00035811	500.29544651942433	16.099	0.62094	16.036	15.73	16.351	-0.062534					42	21	3	0	0	0	0.22179	1	1224	1224		26.021	5.6062	1	150280			20169	638	11416	11417	25339	25339					0.07670029477321805
KTQRRKHTIAK	11	Unmodified	_KTQRRKHTIAK_					0	0	0		ENST00000556354.5_1_14:23983477-24028046:+|nuORF	ENST00000556354.5_1_14:23983477-24028046:+|nuORF	ENST00000556354.5_1_14:23983477-24028046:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.30084228515625	3	456.28451	1365.8317	-0.088322	-4.03E-05	1.6522	0.00075389	1.5639	0.00071359	456.61936171238733	29.733	0.31916	29.747	29.623	29.943	0.013475					13	10	2	0	0	0	0.46554	1	5403	5403		2.6312	0	1	31074			20170	11854	11417	11418	25340	25340					0.16341730385261144
KTQTIFLKY	9	Unmodified	_KTQTIFLKY_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.3344116210938	2	571.334424	1140.6543	0.071837	4.1043E-05	-0.041295	-2.3594E-05	0.030541	1.7449E-05	571.3344143646567	41.305	0.6358	41.305	40.96	41.596	0					85	23	5	0	0	0	6.0404E-05	3	8834	8834;8877;8927		147.24	92.467	1	6717200			20171	4119	11418	11419	25341;25342;25343	25341					0.08959462062557577
KTQTIFLKY	9	Unmodified	_KTQTIFLKY_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.33447265625	2	571.334424	1140.6543	0.35323	0.00020181	-0.28888	-0.00016505	0.064351	3.6766E-05	571.3342696402708	40.999	0.74074	41.089	40.77	41.511	0.090248					101	27	5	0	0	0	5.3912E-07	4	8800	8755;8800;8850;8902		159.1	100.42	1	7595400			20172	4119	11418	11419	25344;25345;25346;25347	25345					0.08959462062557577
KTQTIFLKY	9	Unmodified	_KTQTIFLKY_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3344116210938	2	571.334424	1140.6543	0.031519	1.8008E-05	-0.034244	-1.9565E-05	-0.002725	-1.5569E-06	571.3344068587504	40.953	0.70023	41.05	40.748	41.448	0.096626					97	25	5	0	0	0	5.3912E-07	4	8770	8725;8770;8823;8878		159.1	100.42	1	7274800			20173	4119	11418	11419	25348;25349;25350;25351	25349					0.08959462062557577
KTRHPRKID	9	Unmodified	_KTRHPRKID_					0	0	0		SCAPER|p.A872Pfs*4|1|0.42|ENSG00000140386|chr15:76665685-76665685|T/-|frameshift_variant;ENST00000303521.10_1_15:76673691-77134263:-|nuORF;ENSG00000140386|ENST00000563290|SCAPER;ENST00000538941.6_1_15:77085706-77134263:-|nuORF	SCAPER|p.A872Pfs*4|1|0.42|ENSG00000140386|chr15:76665685-76665685|T/-|frameshift_variant	SCAPER|p.A872Pfs*4|1|0.42|ENSG00000140386|chr15:76665685-76665685|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8428955078125	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.22	1	118.25	117.75	118.75	0.026253								0	0	0	0.264	1	30619	30619		1.8442	0	1				20174	4298	11419	11420	25352	25352					0.10422436476960684
KTRKAKRA	8	Unmodified	_KTRKAKRA_					0	0	0			REV__ENSG00000124795|ENST00000652689|DEK	REV__ENSG00000124795|ENST00000652689|DEK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.78765869140625	2	479.817067	957.619582	0.38914	0.00018672	2.2056	0.0010583	2.5947	0.001245	479.81803227304795	38.639	0.24057	38.737	38.568	38.808	0.097527					10	8	2	0	0	0	0.34294	1	8072	8072		7.2892	4.9865	1	78794	+		20175	15251	11420	11421	25353	25353					0.13907683765114598
KTRRHLHLF	9	Unmodified	_KTRRHLHLF_					0	0	0			REV__nc|ENSG00000005810|O75592-2|MYCBP2	REV__nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.92926025390625	3	403.243874	1206.70979	-0.047309	-1.9077E-05	-0.051933	-2.0942E-05	-0.099242	-4.0019E-05	403.2438168484058	39.793	0.53429	39.886	39.72	40.254	0.09267					27	18	2	0	0	0	0.26099	1	8426	8426		2.9952	0.91127	1	219910	+		20176	13346	11421	11422	25354	25354					0.11470733093551644
KTRRHLHLF	9	Unmodified	_KTRRHLHLF_					0	0	0			REV__nc|ENSG00000005810|O75592-2|MYCBP2	REV__nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	403.243874	1206.70979	-0.2311	-9.3191E-05	0.39575	0.00015959	0.16465	6.6395E-05	403.2439270206845	40.038	0.45548	40.038	39.803	40.259	0	0.1165	0.00038542	NaN	2.9952	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109200	+		20177	13346	11421	11422							0.11470733093551644
KTRRHLHLF	9	Unmodified	_KTRRHLHLF_					0	0	0			REV__nc|ENSG00000005810|O75592-2|MYCBP2	REV__nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	403.243874	1206.70979	-0.11163	-4.5013E-05	-0.015816	-6.3777E-06	-0.12744	-5.1391E-05	403.24406588032923	39.742	0.46797	39.842	39.65	40.118	0.099407	-0.080381	-0.00011247	NaN	2.9952	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171350	+		20178	13346	11421	11422							0.11470733093551644
KTSDFLKVL	9	Unmodified	_KTSDFLKVL_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000487321.1_1_2:219114510-219118635:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3024291992188	2	525.813325	1049.6121	0.65244	0.00034306	-0.24875	-0.0001308	0.40369	0.00021227	525.813028385478	50.209	0.64589	50.209	49.923	50.569	0					54	23	3	0	0	0	0.090256	1	11599	11599		57.722	19.748	1	909750			20179	5682	11422	11423	25355	25355					0.08927486654192762
KTSDFLKVL	9	Unmodified	_KTSDFLKVL_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000487321.1_1_2:219114510-219118635:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8134155273438	2	525.813325	1049.6121	0.92615	0.00048698	-0.45881	-0.00024125	0.46734	0.00024573	525.812955839885	50.117	0.72516	50.162	49.957	50.682	0.044891					59	26	3	0	0	0	0.075356	1	11606	11606		55.503	26.421	1	1107500			20180	5682	11422	11423	25356	25356					0.08927486654192762
KTSDFLKVL	9	Unmodified	_KTSDFLKVL_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000487321.1_1_2:219114510-219118635:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8132934570312	2	525.813325	1049.6121	0.98946	0.00052027	-0.65287	-0.00034329	0.33659	0.00017699	525.812778510539	50.164	0.82864	50.185	49.939	50.768	0.020691					65	30	3	0	0	0	0.073988	1	11618	11618		43.982	4.0321	1	1100700			20181	5682	11422	11423	25357	25357					0.08927486654192762
KTSGSNVKIVK	11	Unmodified	_KTSGSNVKIVK_					0	0	0		ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8535766601562	2	580.853512	1159.69247	-0.046508	-2.7014E-05	0.29833	0.00017329	0.25183	0.00014627	580.8536297272587	13.713	0.42527	13.713	13.567	13.992	0					42	14	4	0	0	0	0.056067	1	501	501		51.488	0	1	421410			20182	3136	11423	11424	25358	25358					0.1190134797718656
KTSGSNVKIVK	11	Unmodified	_KTSGSNVKIVK_					0	0	0		ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8534545898438	2	580.853512	1159.69247	-0.081165	-4.7145E-05	0.19862	0.00011537	0.11746	6.8226E-05	580.853581076617	13.779	0.5095	13.675	13.513	14.023	-0.10466					47	17	4	0	0	0	0.0096108	1	523	523		70.496	5.804	1	441970			20183	3136	11423	11424	25359	25359					0.1190134797718656
KTSGSNVKIVK	11	Unmodified	_KTSGSNVKIVK_					0	0	0		ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8536376953125	2	580.853512	1159.69247	-0.068406	-3.9734E-05	0.38277	0.00022233	0.31436	0.0001826	580.8536505223188	13.796	0.46142	13.73	13.575	14.037	-0.066068					41	15	4	0	0	0	0.012242	1	519	519		64.927	0	1	496440			20184	3136	11423	11424	25360	25360					0.1190134797718656
KTSIILEM	8	Oxidation (M)	_KTSIILEM(Oxidation (M))_		KTSIILEM(1)		KTSIILEM(100)	0	0	1		ENSG00000130147|ENST00000392011|SH3BP4;nc|ENSG00000130147|Q9P0V3-2|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7644958496094	2	475.764986	949.515419	0.40874	0.00019446	-0.32364	-0.00015398	0.085099	4.0487E-05	475.7647528387074	36.286	0.46814	36.368	36.233	36.701	0.082355					26	16	2	0	0	0	0.019016	1	7358	7358		103.35	14.4	1	288700			20185	3451	11424	11425	25361	25361		438			0.03864176102729289
KTSIILEM	8	Oxidation (M)	_KTSIILEM(Oxidation (M))_					0	0	1		ENSG00000130147|ENST00000392011|SH3BP4;nc|ENSG00000130147|Q9P0V3-2|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	475.764986	949.515419	0.24077	0.00011455	-0.058004	-2.7596E-05	0.18277	8.6956E-05	475.7648133286667	36.398	0.52652	36.398	36.229	36.756	0	0.007353	0.00035661	NaN	103.35	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307210			20186	3451	11424	11425				438			0.03864176102729289
KTSIILEM	8	Oxidation (M)	_KTSIILEM(Oxidation (M))_					0	0	1		ENSG00000130147|ENST00000392011|SH3BP4;nc|ENSG00000130147|Q9P0V3-2|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	475.764986	949.515419	0.63928	0.00030415	-0.70224	-0.0003341	-0.062964	-2.9956E-05	475.76460305329067	36.319	0.38195	36.406	36.244	36.626	0.08625	0.015198	-0.0002564	NaN	103.35	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293120			20187	3451	11424	11425				438			0.03864176102729289
KTSKKIKH	8	Unmodified	_KTSKKIKH_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2;REV__ENST00000437318.5_1_15:20588586-20648641:-|nuORF	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7743835449219	2	485.313826	968.613099	-0.13928	-6.7595E-05	0.80804	0.00039215	0.66876	0.00032456	485.31416532263637	13.776	0.27797	13.671	13.538	13.816	-0.10466					15	9	2	0	0	0	0.34408	1	552	552		2.3027	0	1	57823	+		20188	15386;20920	11425	11426	25362	25362					0.12753745813756723
KTSKKIKH	8	Unmodified	_KTSKKIKH_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2;REV__ENST00000437318.5_1_15:20588586-20648641:-|nuORF	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.77447509765625	2	485.313826	968.613099	-0.078848	-3.8266E-05	0.51325	0.00024909	0.43441	0.00021082	485.31403069917246	13.748	0.25874	13.682	13.602	13.861	-0.066067					14	8	2	0	0	0	0.34408	1	549	549		2.3027	0	1	40151	+		20189	15386;20920	11425	11426	25363	25363					0.12753745813756723
KTSLESHTVL	10	Unmodified	_KTSLESHTVL_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7545776367188	2	557.808771	1113.60299	0.11518	6.4247E-05	-0.14271	-7.9602E-05	-0.027528	-1.5356E-05	557.8082802945069	15.928	0.27211	15.928	15.763	16.035	0					12	9	2	0	0	0	0.32033	1	1144	1144		3.5965	0	1	26160			20190	7792	11426	11427	25364	25364					0.050730932978467536
KTSLESHTVL	10	Unmodified	_KTSLESHTVL_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.754638671875	2	557.808771	1113.60299	0.097718	5.4508E-05	-0.71223	-0.00039729	-0.61451	-0.00034278	558.3101831624914	16.006	0.25672	15.944	15.781	16.038	-0.062534					12	8	2	0	0	0	0.31847	1	1162	1162		6.7232	0	1	24538			20191	7792	11426	11427	25365	25365					0.050730932978467536
KTSLLSERI	9	Unmodified	_KTSLLSERI_					0	0	0		ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32	ENSG00000146350|ENST00000398212|TBC1D32	ENSG00000146350|ENST00000398212|TBC1D32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.8136596679688	2	523.813856	1045.61316	0.25701	0.00013463	-0.51187	-0.00026813	-0.25486	-0.0001335	523.8137287394519	18.02	0.48931	17.902	17.694	18.184	-0.11739					44	16	4	0	0	0	0.30459	1	1795	1795		8.1555	0	1	151520			20192	4706	11427	11428	25366	25366					0.0921770102308983
KTSLSLFTPPK	11	Unmodified	_KTSLSLFTPPK_					0	0	0		ENST00000369827.7_1_1:110217476-110217722:+|nuORF	ENST00000369827.7_1_1:110217476-110217722:+|nuORF	ENST00000369827.7_1_1:110217476-110217722:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.90692138671875	3	406.907934	1217.70197	-0.46202	-0.000188	-1.9938	-0.0008113	-2.4558	-0.0009993	406.906834448323	12.331	0.40126	12.263	12.032	12.434	-0.06806					20	15	2	0	0	0	0.46554	1	109	109		2.6312	1.1761	1	57322			20193	9785	11428	11429	25367	25367					0.10183116262737713
KTSNKKILD	9	Unmodified	_KTSNKKILD_					0	0	0			REV__ENST00000564365.5_1_16:88927539-88927701:+|nuORF	REV__ENST00000564365.5_1_16:88927539-88927701:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.8137817382812	2	523.813856	1045.61316	0.40466	0.00021197	-0.34973	-0.00018319	0.054932	2.8774E-05	523.8135534490312	17.824	0.49858	17.824	17.66	18.158	0					36	16	3	0	0	0	0.3208	1	1796	1796		5.7319	1.7875	1	125690	+		20194	22339	11429	11430	25368	25368					0.0921770102308983
KTSNKKILD	9	Unmodified	_KTSNKKILD_					0	0	0			REV__ENST00000564365.5_1_16:88927539-88927701:+|nuORF	REV__ENST00000564365.5_1_16:88927539-88927701:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.8137817382812	2	523.813856	1045.61316	0.25701	0.00013463	-0.51187	-0.00026813	-0.25486	-0.0001335	523.8137287394519	18.02	0.48931	17.902	17.694	18.184	-0.11739					44	16	4	0	0	0	0.3208	1	1843	1843		5.7319	0	1	151520	+		20195	22339	11429	11430	25369	25369					0.0921770102308983
KTSNKKILD	9	Unmodified	_KTSNKKILD_					0	0	0			REV__ENST00000564365.5_1_16:88927539-88927701:+|nuORF	REV__ENST00000564365.5_1_16:88927539-88927701:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.8137817382812	2	523.813856	1045.61316	0.27629	0.00014472	-0.50255	-0.00026324	-0.22626	-0.00011852	523.8136056277002	18.018	0.51696	17.959	17.767	18.284	-0.058849					49	18	4	0	0	0	0.3208	1	1834	1834		5.7319	1.7875	1	147360	+		20196	22339	11429	11430	25370	25370					0.0921770102308983
KTSRRGRR	8	Unmodified	_KTSRRGRR_					0	0	0			REV__ENSG00000219481|ENST00000430580|NBPF1	REV__ENSG00000219481|ENST00000430580|NBPF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3061828613281	2	508.812848	1015.61114	-0.16647	-8.4704E-05	3.1553	0.0016055	2.9889	0.0015208	508.8143550378641	12.466	0.20961	12.398	12.281	12.491	-0.06806					8	6	2	0	0	0	0.34294	1	152	152		7.2892	2.5332	1	9497	+		20197	19090	11430	11431	25371	25371					0.10396129848516011
KTSRRRRA	8	Unmodified	_KTSRRRRA_					0	0	0			REV__ENST00000377918.7_1_13:58208937-58209021:+|nuORF	REV__ENST00000377918.7_1_13:58208937-58209021:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7982177734375	2	515.820673	1029.62679	-0.067147	-3.4636E-05	0.029565	1.525E-05	-0.037582	-1.9386E-05	515.819361840034	12.983	0.3433	12.884	12.785	13.129	-0.099291					16	11	2	0	0	0	0.34247	1	271	271		8.5933	1.8701	1	40928	+		20198	20512	11431	11432	25372	25372					0.11316416365571058
KTSSIIIAL	9	Unmodified	_KTSSIIIAL_					0	0	0		nc|ENSG00000163297|P58335-2|ANTXR2;ENSG00000163297|ENST00000403729|ANTXR2;nc|ENSG00000163297|P58335|ANTXR2;nc|ENSG00000163297|P58335-3|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.3026123046875	2	473.302593	944.590633	0.36877	0.00017454	-0.032881	-1.5563E-05	0.33589	0.00015898	473.3024948545779	55.728	0.53246	55.728	55.46	55.992	0					40	18	3	0	0	0	0.11461	1	13330	13330		36.127	7.0454	1	788820			20199	5663	11432	11433	25373	25373					0.1161210162547377
KTSSIIIAL	9	Unmodified	_KTSSIIIAL_					0	0	0		nc|ENSG00000163297|P58335-2|ANTXR2;ENSG00000163297|ENST00000403729|ANTXR2;nc|ENSG00000163297|P58335|ANTXR2;nc|ENSG00000163297|P58335-3|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7896728515625	2	473.302593	944.590633	0.50259	0.00023788	-0.068878	-3.26E-05	0.43371	0.00020528	473.3024111638287	55.665	0.48871	55.736	55.501	55.989	0.070885					40	17	3	0	0	0	0.25123	1	13378	13378		12.241	12.241	1	793860			20200	5663	11432	11433	25374	25374					0.1161210162547377
KTSSIIIAL	9	Unmodified	_KTSSIIIAL_					0	0	0		nc|ENSG00000163297|P58335-2|ANTXR2;ENSG00000163297|ENST00000403729|ANTXR2;nc|ENSG00000163297|P58335|ANTXR2;nc|ENSG00000163297|P58335-3|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.302490234375	2	473.302593	944.590633	0.45859	0.00021705	-0.010632	-5.0321E-06	0.44796	0.00021202	473.30248783185783	55.777	0.59928	55.757	55.508	56.107	-0.019077					42	21	3	0	0	0	0.13748	2	13328	13328;13379		32.786	8.8302	1	658220			20201	5663	11432	11433	25375;25376	25375					0.1161210162547377
KTSTTFNIV	9	Unmodified	_KTSTTFNIV_					0	0	0		ENSG00000011677|ENST00000370314|GABRA3	ENSG00000011677|ENST00000370314|GABRA3	ENSG00000011677|ENST00000370314|GABRA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7784729003906	2	505.779482	1009.54441	0.20242	0.00010238	-0.42518	-0.00021505	-0.22276	-0.00011267	505.7792543681993	23.674	0.57041	23.601	23.396	23.966	-0.072559					46	19	3	0	0	0	0.29176	1	3505	3505		10.074	0.6908	1	120040			20202	449	11433	11434	25377	25377					0.04002036723375113
KTSTTFNIV	9	Unmodified	_KTSTTFNIV_					0	0	0		ENSG00000011677|ENST00000370314|GABRA3	ENSG00000011677|ENST00000370314|GABRA3	ENSG00000011677|ENST00000370314|GABRA3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	505.779482	1009.54441	0.14905	7.5384E-05	-0.31241	-0.00015801	-0.16336	-8.2625E-05	505.77935302998543	23.558	0.49331	23.558	23.336	23.829	0	-0.06045	-4.2251E-05	NaN	10.074	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144910			20203	449	11433	11434							0.04002036723375113
KTSTTFNIV	9	Unmodified	_KTSTTFNIV_					0	0	0		ENSG00000011677|ENST00000370314|GABRA3	ENSG00000011677|ENST00000370314|GABRA3	ENSG00000011677|ENST00000370314|GABRA3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	505.779482	1009.54441	0.38252	0.00019347	-0.14594	-7.3813E-05	0.23658	0.00011966	505.7793764799873	23.734	0.54479	23.695	23.42	23.965	-0.038927	0.077325	0.00012614	NaN	10.074	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120380			20204	449	11433	11434							0.04002036723375113
KTSVVFHQL	9	Unmodified	_KTSVVFHQL_					0	0	0		ENST00000471008.5_1_6:30029641-30029800:+|nuORF;ENSG00000066379|ENST00000332435|POLR1H	ENST00000471008.5_1_6:30029641-30029800:+|nuORF	ENST00000471008.5_1_6:30029641-30029800:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.803466796875	2	529.803291	1057.59203	0.35546	0.00018832	0.87599	0.0004641	1.2314	0.00065242	529.803631383635	33.16	0.50212	33.16	32.924	33.426	0					26	17	2	0	0	0	0.064268	1	6415	6415		47.594	18.513	1	160220			20205	839	11434	11435	25378	25378					0.06553735714237519
KTSVVFHQL	9	Unmodified	_KTSVVFHQL_					0	0	0		ENST00000471008.5_1_6:30029641-30029800:+|nuORF;ENSG00000066379|ENST00000332435|POLR1H	ENST00000471008.5_1_6:30029641-30029800:+|nuORF	ENST00000471008.5_1_6:30029641-30029800:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	529.803291	1057.59203	0.29869	0.00015825	1.0588	0.00056094	1.3575	0.00071919	529.8037208079912	33.063	0.36551	33.119	32.919	33.284	0.055309	-0.010024	0.00014483	NaN	47.594	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151730			20206	839	11434	11435							0.06553735714237519
KTSVVFHQL	9	Unmodified	_KTSVVFHQL_					0	0	0		ENST00000471008.5_1_6:30029641-30029800:+|nuORF;ENSG00000066379|ENST00000332435|POLR1H	ENST00000471008.5_1_6:30029641-30029800:+|nuORF	ENST00000471008.5_1_6:30029641-30029800:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	529.803291	1057.59203	0.40521	0.00021468	0.79822	0.0004229	1.2034	0.00063758	529.803562685908	33.054	0.36021	33.108	32.956	33.316	0.054371	-0.020902	-0.00013124	NaN	47.594	24	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209930			20207	839	11434	11435							0.06553735714237519
KTTARHGLQSL	11	Unmodified	_KTTARHGLQSL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.56744384765625	3	404.566683	1210.67822	0.057024	2.307E-05	0.2326	9.4104E-05	0.28963	0.00011717	404.56676834935917	29.825	0.75393	29.825	29.413	30.167	0					84	26	4	0	0	0	0.38753	1	5342	5342		7.4291	0	1	352070			20208	12673	11435	11436	25379	25379					0.08130695548948097
KTTARHGLQSL	11	Unmodified	_KTTARHGLQSL_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.56744384765625	3	404.566683	1210.67822	-0.092807	-3.7547E-05	0.22372	9.0509E-05	0.13091	5.2963E-05	404.56684809810605	29.769	0.78572	29.781	29.417	30.202	0.012264					79	26	4	0	0	0	0.38753	1	5328	5328		7.4291	0	1	350900			20209	12673	11435	11436	25380	25380					0.08130695548948097
KTTIFTDAK	9	Unmodified	_KTTIFTDAK_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.788330078125	2	512.787307	1023.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.97	1	21.87	21.37	22.37	-0.10034								0	0	0	0.23413	1	3005	3005		11.495	1.4208	1				20210	1832	11436	11437	25381	25381					0.04922323240418791
KTTTIAVEV	9	Unmodified	_KTTTIAVEV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2817687988281	2	481.281857	960.549162	0.017902	8.6161E-06	0.12042	5.7955E-05	0.13832	6.6572E-05	481.2818228480408	38.387	0.9778	38.387	38.034	39.012	0					89	34	4	0	0	0	0.0008224	1	8002	8002		125.04	31.872	1	3386400			20211	2669	11437	11438	25382	25382					0.06730920866141332
KTTTIAVEV	9	Unmodified	_KTTTIAVEV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2817687988281	2	481.281857	960.549162	0.29718	0.00014303	-0.11029	-5.3079E-05	0.18689	8.9948E-05	481.2816522006548	38.285	1.0321	38.376	38.072	39.104	0.090881					91	37	4	0	0	0	0.0028032	2	7970	7970;8025		103.82	29.624	1	3307100			20212	2669	11437	11438	25383;25384	25383					0.06730920866141332
KTTTIAVEV	9	Unmodified	_KTTTIAVEV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.28179931640625	2	481.281857	960.549162	0.27457	0.00013215	-0.072583	-3.4933E-05	0.20199	9.7213E-05	481.28172359498024	38.254	0.80296	38.352	38.064	38.867	0.097527					69	28	3	0	0	0	0.0028032	3	7946	7946;7989;8045		103.82	29.624	1	3334000			20213	2669	11437	11438	25385;25386;25387	25385					0.06730920866141332
KTVDQIQL	8	Unmodified	_KTVDQIQL_					0	0	0		nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.8831481933594	2	472.7742	943.533846	-0.20394	-9.6419E-05	0.82052	0.00038792	0.61658	0.0002915	472.774448195758	14.469	0.34385	14.469	14.279	14.623	0					30	11	4	0	0	0	0.34378	1	686	686		3.9444	0	1	117030			20214	1245	11438	11439	25388	25388					0.059820540689429436
KTVEREKQ	8	Unmodified	_KTVEREKQ_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.767333984375	2	509.288005	1016.56146	-0.081352	-4.1432E-05	-0.063101	-3.2137E-05	-0.14445	-7.3568E-05	509.2880292798291	13.46	0.61461	13.361	13.129	13.743	-0.099291					47	21	3	0	0	0	0.34388	1	496	496		3.5965	0	1	403930	+		20215	15528	11439	11440	25389	25389					0.05383957329183886
KTVGSFASTL	10	Unmodified	_KTVGSFASTL_					0	0	0		nc|ENSG00000084710|Q9Y2G0-2|EFR3B;nc|ENSG00000084710|Q9Y2G0-3|EFR3B;ENSG00000084710|ENST00000403714|EFR3B	nc|ENSG00000084710|Q9Y2G0-2|EFR3B	nc|ENSG00000084710|Q9Y2G0-2|EFR3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7995300292969	2	505.779482	1009.54441	0.56686	0.0002867	1.0736	0.00054301	1.6405	0.00082971	505.77974346695163	84.29	0.21424	84.29	84.109	84.324	0					11	8	2	0	0	0	0.30555	1	22079	22079		20.415	9.3001	1	192960			20216	1247	11440	11441	25390	25390					0.04002036723386482
KTVPVEAVTSK	11	Unmodified	_KTVPVEAVTSK_					0	0	0		ENSG00000085733|ENST00000301843|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF;nc|ENSG00000085733|Q14247-3|CTTN;nc|ENSG00000085733|Q14247-2|CTTN	ENSG00000085733|ENST00000301843|CTTN	ENSG00000085733|ENST00000301843|CTTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.840087890625	2	579.840071	1157.66559	0.03261	1.8908E-05	0.56169	0.00032569	0.5943	0.0003446	579.8401412866251	22.969	0.6278	22.969	22.763	23.39	0					51	21	3	0	0	0	0.2454	1	3321	3321		27.129	11.88	1	194000			20217	1263	11441	11442	25391	25391					0.09306239366037516
KTVPVEAVTSK	11	Unmodified	_KTVPVEAVTSK_					0	0	0		ENSG00000085733|ENST00000301843|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF;nc|ENSG00000085733|Q14247-3|CTTN;nc|ENSG00000085733|Q14247-2|CTTN	ENSG00000085733|ENST00000301843|CTTN	ENSG00000085733|ENST00000301843|CTTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.840087890625	2	579.840071	1157.66559	0.10574	6.1313E-05	0.5516	0.00031984	0.65734	0.00038115	579.8400953103992	23.081	0.59047	22.993	22.79	23.381	-0.08761					54	20	3	0	0	0	0.1843	1	3338	3338		32.616	20.442	1	241670			20218	1263	11441	11442	25392	25392					0.09306239366037516
KTVPVEAVTSK	11	Unmodified	_KTVPVEAVTSK_					0	0	0		ENSG00000085733|ENST00000301843|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF;nc|ENSG00000085733|Q14247-3|CTTN;nc|ENSG00000085733|Q14247-2|CTTN	ENSG00000085733|ENST00000301843|CTTN	ENSG00000085733|ENST00000301843|CTTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.840087890625	2	579.840071	1157.66559	0.21477	0.00012453	0.01033	5.9896E-06	0.2251	0.00013052	579.8399705936251	23.116	0.65282	23.071	22.817	23.47	-0.044867					50	23	3	0	0	0	0.088648	1	3338	3338		42.068	21.653	1	254430			20219	1263	11441	11442	25393	25393					0.09306239366037516
KTVVLHIDG	9	Unmodified	_KTVVLHIDG_					0	0	0		ENST00000506991.1_1_4:139402677-139402851:-|nuORF;ENSG00000104442|ENST00000276569|ARMC1	ENST00000506991.1_1_4:139402677-139402851:-|nuORF	ENST00000506991.1_1_4:139402677-139402851:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.21881103515625	2	491.290017	980.565481	0.095779	4.7055E-05	0.72333	0.00035537	0.81911	0.00040242	491.2901830981153	14.831	0.49989	14.721	14.51	15.01	-0.10981					28	17	2	0	0	0	0.26188	1	813	813		1.6526	0	1	183880			20220	1893	11442	11443	25394	25394					0.07442046822905013
KTVVYGITT	9	Unmodified	_KTVVYGITT_					0	0	0		nc|ENSG00000084110|P42357-2|HAL;ENSG00000084110|ENST00000261208|HAL	nc|ENSG00000084110|P42357-2|HAL	nc|ENSG00000084110|P42357-2|HAL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2994689941406	2	491.2844	980.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.53	1	104.53	104.03	105.03	0								0	0	0	0.2575	1	27748	27748		3.9444	0.3479	1				20221	1241	11443	11444	25395	25395					0.06319224728747486
KTWFWTRIRDL	11	Unmodified	_KTWFWTRIRDL_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.30230712890625	3	507.949016	1520.82522	0.27901	0.00014172	-1.22	-0.00061971	-0.94102	-0.00047799	508.2828529522144	43.67	0.35258	43.67	43.467	43.819	0					18	12	2	0	0	0	0.3331	1	9628	9628		2.2527	0.92309	1	114310	+		20222	15761	11444	11445	25396	25396					0.08563792433869821
KTWFWTRIRDL	11	Unmodified	_KTWFWTRIRDL_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	507.949016	1520.82522	0.38951	0.00019785	-1.7635	-0.00089576	-1.374	-0.00069791	507.9481054955181	43.503	0.31084	43.58	43.425	43.736	0.077518	-0.044609	-0.00025349	NaN	2.2527	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170190	+		20223	15761	11444	11445							0.08563792433869821
KTWIFRKTYI	10	Unmodified	_KTWIFRKTYI_					0	0	0		nc|ENSG00000288642|P51861|CDR1	nc|ENSG00000288642|P51861|CDR1	nc|ENSG00000288642|P51861|CDR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.59881591796875	3	452.599324	1354.77614	-0.18365	-8.3119E-05	-1.7577	-0.00079555	-1.9414	-0.00087866	452.59887047243626	12.458	0.3925	12.458	12.332	12.724	0					33	12	5	0	0	0	0.40943	1	142	142		1.7423	0.14999	1	119570			20224	13006	11445	11446	25397	25397					0.11294504144962048
KTWIFRKTYI	10	Unmodified	_KTWIFRKTYI_					0	0	0		nc|ENSG00000288642|P51861|CDR1	nc|ENSG00000288642|P51861|CDR1	nc|ENSG00000288642|P51861|CDR1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	452.599324	1354.77614	-0.26097	-0.00011812	-1.1389	-0.00051548	-1.3999	-0.0006336	452.598933346169	12.498	0.35693	12.43	12.313	12.67	-0.06806	0.018661	0.00010158	NaN	1.7423	26	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126720			20225	13006	11445	11446							0.11294504144962048
KTYDTVHRRL	10	Unmodified	_KTYDTVHRRL_					0	0	0		nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;ENSG00000081803|ENST00000449022|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8882141113281	3	430.242199	1287.70477	-0.22617	-9.7307E-05	-1.1774	-0.00050659	-1.4036	-0.00060389	430.242020450681	22.196	0.43528	22.147	21.855	22.29	-0.049377					20	15	2	0	0	0	0.31899	1	3078	3078		7.4771	2.4295	1	45913			20226	1189	11446	11447	25398	25398					0.07242384440269234
KTYDTVHRRL	10	Unmodified	_KTYDTVHRRL_					0	0	0		nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;ENSG00000081803|ENST00000449022|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	430.242199	1287.70477	-0.20986	-9.0289E-05	-3.5534	-0.0015288	-3.7633	-0.0016191	430.2409330847644	22.42	0.56739	22.42	21.996	22.563	0	0.1368	-0.0019216	NaN	7.4771	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58585			20227	1189	11446	11447							0.07242384440269234
KTYHALSNLPK	11	Unmodified	_KTYHALSNLPK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.5749816894531	3	424.575067	1270.70337	-0.16176	-6.8677E-05	0.37851	0.0001607	0.21675	9.2027E-05	424.5749686903189	25.429	0.83855	25.429	24.902	25.741	0					86	28	5	0	0	0	0.0052585	1	4053	4053		79.705	58.834	1	571000			20228	2207	11447	11448	25399	25399					0.07884750351490766
KTYHALSNLPK	11	Unmodified	_KTYHALSNLPK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.5749206542969	3	424.575067	1270.70337	-0.36633	-0.00015554	0.44846	0.00019041	0.082128	3.487E-05	424.5750408336028	25.488	0.78629	25.432	24.946	25.732	-0.055931					86	27	5	0	0	0	0.019748	1	4055	4055		61.989	46.451	1	619300			20229	2207	11447	11448	25400	25400					0.07884750351490766
KTYHALSNLPK	11	Unmodified	_KTYHALSNLPK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.3592529296875	2	636.358962	1270.70337	0.26307	0.00016741	-0.21385	-0.00013608	0.049225	3.1325E-05	636.358753984275	25.446	0.251	25.39	25.314	25.565	-0.055931					15	8	2	0	0	0	0.43485	1	4063	4063		7.9454	5.2102	1	47262			20230	2207	11447	11448	25401	25401					0.07884750351490766
KTYHALSNLPK	11	Unmodified	_KTYHALSNLPK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.5749206542969	3	424.575067	1270.70337	-0.36228	-0.00015381	0.47197	0.00020038	0.10969	4.6571E-05	424.5750744521783	25.554	0.90207	25.523	24.922	25.824	-0.031408					87	31	4	0	0	0	0.035046	1	4059	4059		57.566	47.802	1	703570			20231	2207	11447	11448	25402	25402					0.07884750351490766
KTYIPPKGETK	11	Unmodified	_KTYIPPKGETK_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000559968.1_1_14:68082236-68082464:+|nuORF	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2431335449219	3	421.243206	1260.70779	-0.31762	-0.00013379	0.2649	0.00011159	-0.052718	-2.2207E-05	421.24331386743427	14.729	2.8186	14.729	14.423	17.242	0					241	98	3	0	0	0	0.00086112	4	796	796;844;896;1029		98.811	63.018	1	661710			20232	7817	11448	11449	25403;25404;25405;25406	25403					0.08786214774431755
KTYIPPKGETK	11	Unmodified	_KTYIPPKGETK_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000559968.1_1_14:68082236-68082464:+|nuORF	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	631.3626708984375	2	631.36117	1260.70779	0.054268	3.4263E-05	0.51201	0.00032326	0.56628	0.00035753	631.3614910990598	14.794	1.1125	14.794	14.478	15.591	0					76	38	3	0	0	0	0.36266	2	868	815;868		14.957	4.8066	1	82653			20233	7817	11448	11449	25407;25408	25408					0.08786214774431755
KTYIPPKGETK	11	Unmodified	_KTYIPPKGETK_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000559968.1_1_14:68082236-68082464:+|nuORF	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	631.8628540039062	2	631.36117	1260.70779	0.038466	2.4286E-05	0.57887	0.00036548	0.61734	0.00038976	631.3615534037657	14.825	0.86928	14.715	14.51	15.38	-0.10982					65	30	3	0	0	0	0.32345	2	844	844;896		23.964	9.5588	1	111670			20234	7817	11448	11449	25409;25410	25409					0.08786214774431755
KTYIPPKGETK	11	Unmodified	_KTYIPPKGETK_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000559968.1_1_14:68082236-68082464:+|nuORF	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2433166503906	3	421.243206	1260.70779	-0.20948	-8.8241E-05	0.33745	0.00014215	0.12797	5.3906E-05	421.2433257619652	14.869	2.2812	14.759	14.391	16.672	-0.10981					221	79	5	0	0	0	0.00086112	4	856	856;898;1056;1114		98.811	65.218	1	857330			20235	7817	11448	11449	25411;25412;25413;25414	25411					0.08786214774431755
KTYIPPKGETK	11	Unmodified	_KTYIPPKGETK_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000559968.1_1_14:68082236-68082464:+|nuORF	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.3614501953125	2	631.36117	1260.70779	0.085166	5.3771E-05	0.48069	0.00030349	0.56586	0.00035726	631.3613869590771	14.911	0.83469	14.847	14.589	15.424	-0.064413					67	28	3	0	0	0	0.41651	1	836	836		14.957	4.1577	1	94527			20236	7817	11448	11449	25415	25415					0.08786214774431755
KTYIPPKGETK	11	Unmodified	_KTYIPPKGETK_					0	0	0		nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1;ENST00000559968.1_1_14:68082236-68082464:+|nuORF	nc|ENSG00000124097|B2RPK0|HMGB1P1	nc|ENSG00000124097|B2RPK0|HMGB1P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.2432861328125	3	421.243206	1260.70779	-0.22403	-9.437E-05	0.30898	0.00013015	0.084949	3.5784E-05	421.24333740640674	14.881	2.2674	14.817	14.485	16.752	-0.064414					243	78	5	0	0	0	0.010219	5	863	863;915;1030;1076;1173		69.209	43.771	1	758380			20237	7817	11448	11449	25416;25417;25418;25419;25420	25416					0.08786214774431755
KTYSKPFHPK	10	Unmodified	_KTYSKPFHPK_					0	0	0		ENST00000483500.1_1_4:74606363-74607395:+|nuORF;ENSG00000169429|ENST00000307407|CXCL8	ENST00000483500.1_1_4:74606363-74607395:+|nuORF	ENST00000483500.1_1_4:74606363-74607395:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.8983154296875	3	411.564391	1231.67134	-0.37035	-0.00015242	-0.64002	-0.00026341	-1.0104	-0.00041583	411.8985230556921	13.779	0.72083	13.779	13.365	14.086	0					61	24	5	0	0	0	0.3183	1	538	538		8.4443	5.7091	1	167170			20238	6357	11449	11450	25421	25421					0.06477382668367682
KTYSLSSSF	9	Unmodified	_KTYSLSSSF_					0	0	0		ENSG00000129315|ENST00000261900|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	ENSG00000129315|ENST00000261900|CCNT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7877197265625	2	510.25584	1018.49713	0.15453	7.8848E-05	1.6287	0.00083107	1.7833	0.00090992	510.25674008923676	23.543	0.61977	23.471	23.285	23.905	-0.072559					31	21	2	0	0	0	0.24311	1	3497	3497		16.942	4.4107	1	94172			20239	3420	11450	11451	25422	25422					-0.011382425475972013
KTYSTEEYHHR	11	Unmodified	_KTYSTEEYHHR_					0	0	0		ENST00000533777.5_1_15:79224365-79230096:-|nuORF;ENST00000534038.5_1_15:79224365-79237386:-|nuORF;ENSG00000103811|ENST00000220166|CTSH	ENST00000533777.5_1_15:79224365-79230096:-|nuORF	ENST00000533777.5_1_15:79224365-79230096:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7744445800781	3	484.228507	1449.66369	-0.10543	-5.1051E-05	0.16382	7.9326E-05	0.058391	2.8275E-05	484.2284669761113	13.754	0.25031	13.754	13.597	13.847	0					13	8	2	0	0	0	0.33339	1	520	520		1.0136	0	1	29891			20240	1853	11451	11452	25423	25423					-0.04315421389878793
KTYSTEEYHHR	11	Unmodified	_KTYSTEEYHHR_					0	0	0		ENST00000533777.5_1_15:79224365-79230096:-|nuORF;ENST00000534038.5_1_15:79224365-79237386:-|nuORF;ENSG00000103811|ENST00000220166|CTSH	ENST00000533777.5_1_15:79224365-79230096:-|nuORF	ENST00000533777.5_1_15:79224365-79230096:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.77447509765625	3	484.228507	1449.66369	-0.078828	-3.8171E-05	0.71468	0.00034607	0.63585	0.0003079	484.56325770734657	13.859	0.1731	13.793	13.687	13.861	-0.066068					11	5	3	0	0	0	0.33321	1	549	549		1.9275	0	1	44960			20241	1853	11451	11452	25424	25424					-0.04315421389878793
KVAAQKNFI	9	Unmodified	_KVAAQKNFI_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2856750488281	2	509.805834	1017.59712	0.33482	0.00017069	-0.37184	-0.00018957	-0.037018	-1.8872E-05	509.8056674522899	37.458	0.44094	37.546	37.193	37.634	0.08741					16	15	2	0	0	0	0.25066	1	7712	7712		7.2892	0	1	73002			20242	7524	11452	11453	25425	25425					0.08902039576844345
KVADFGLAR	9	Unmodified	_KVADFGLAR_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000111816|P42685-2|FRK;ENST00000411578.6_1_3:49924742-49933170:-|nuORF;ENSG00000125508|ENST00000217188|SRMS;ENSG00000111816|ENST00000606080|FRK;nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC;ENST00000493775.1_1_20:36030831-36031351:+|nuORF;ENST00000477066.5_1_20:36025122-36031779:+|nuORF	ENSG00000105976|ENST00000397752|MET;ENSG00000197122|ENST00000373578|SRC	ENSG00000105976|ENST00000397752|MET	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7661437988281	2	488.782359	975.550165	0.55492	0.00027124	-1.2207	-0.00059665	-0.66577	-0.00032541	488.7816023967264	32.283	0.4086	32.283	32.091	32.5	0					22	14	2	0	0	0	0.2422	1	6154	6154		19.362	4.5237	1	165810			20243	2042;7931	11453	11454	25426	25426					0.06141180025713311
KVADMALHY	9	Oxidation (M)	_KVADM(Oxidation (M))ALHY_		KVADM(1)ALHY		KVADM(59)ALHY	0	0	1		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.265869140625	2	532.265684	1062.51682	0.065906	3.5079E-05	-0.19241	-0.00010241	-0.1265	-6.7334E-05	532.2654178424586	27.79	0.48448	27.779	27.555	28.039	-0.011562					28	16	2	0	0	0	0.034444	1	4765	4765		58.679	38.225	1	189180			20244	5228	11454	11455	25427	25427		635			-0.011941898085069624
KVAELILHG	9	Unmodified	_KVAELILHG_					0	0	0		ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1	ENST00000508737.1_1_4:38930819-38945175:+|nuORF	ENST00000508737.1_1_4:38930819-38945175:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.3184814453125	2	490.300384	978.586216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.898	1	20.845	20.345	21.345	-0.05291								0	0	0	0.25631	1	2676	2676		4.3292	0.38484	1				20245	7991	11455	11456	25428	25428					0.0960663720256889
KVALIDCDPEP	11	Unmodified	_KVALIDCDPEP_					0	0	0			REV__TRAPPC11|p.P618Lfs*20|1|0.29|ENSG00000168538|chr4:183686707-183686710|CCCA/-|frameshift_variant	REV__TRAPPC11|p.P618Lfs*20|1|0.29|ENSG00000168538|chr4:183686707-183686710|CCCA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8551025390625	2	600.302464	1198.59037	0.18418	0.00011056	-1.8568	-0.0011147	-1.6727	-0.0010041	600.3011197572833	42.663	0.54127	42.754	42.527	43.069	0.091362					29	19	2	0	0	0	0.32951	1	9368	9368		8.7454	3.0136	1	305320	+		20246	17467	11456	11457	25429	25429					-0.000976861567096421
KVALIDCDPEP	11	Unmodified	_KVALIDCDPEP_					0	0	0			REV__TRAPPC11|p.P618Lfs*20|1|0.29|ENSG00000168538|chr4:183686707-183686710|CCCA/-|frameshift_variant	REV__TRAPPC11|p.P618Lfs*20|1|0.29|ENSG00000168538|chr4:183686707-183686710|CCCA/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	600.302464	1198.59037	0.36822	0.00022104	-1.8966	-0.0011385	-1.5284	-0.00091748	600.3012801580098	42.762	0.41207	42.847	42.591	43.003	0.085197	0.046483	-2.0395E-05	NaN	11.495	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272730	+		20247	17467	11456	11457							-0.000976861567096421
KVANIILSY	9	Unmodified	_KVANIILSY_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8079833984375	2	510.808042	1019.60153	0.48647	0.00024849	-0.47107	-0.00024063	0.015398	7.8653E-06	510.80772371454043	53.543	0.655	53.543	53.259	53.914	0					62	24	3	0	0	0	0.026033	1	12666	12666		82.529	36.508	1	1735400			20248	1868	11457	11458	25430	25430					0.09251503999757915
KVANIILSY	9	Unmodified	_KVANIILSY_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8077392578125	2	510.808042	1019.60153	0.19285	9.8509E-05	-0.084808	-4.3321E-05	0.10804	5.5188E-05	510.80793420163764	53.47	0.56987	53.527	53.325	53.895	0.056259					51	21	3	0	0	0	0.0080395	1	12654	12654		82.529	36.508	1	2192100			20249	1868	11457	11458	25431	25431					0.09251503999757915
KVANIILSY	9	Unmodified	_KVANIILSY_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.807861328125	2	510.808042	1019.60153	0.34575	0.00017661	-0.41428	-0.00021162	-0.068529	-3.5005E-05	510.8078027856218	53.673	0.659	53.663	53.377	54.036	-0.0096092					60	24	3	0	0	0	0.00045155	1	12655	12655		129.77	58.639	1	1874800			20250	1868	11457	11458	25432	25432					0.09251503999757915
KVAPAPAVVK	10	Unmodified	_KVAPAPAVVK_					0	0	0		RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENSG00000148303|ENST00000323345|RPL7A	RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant	RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.31842041015625	2	490.318577	978.622602	0.41124	0.00020164	-0.48979	-0.00024015	-0.078541	-3.851E-05	490.3182193794035	20.574	0.6291	20.574	20.371	21	0					57	21	4	0	0	0	0.093201	2	2584	2584;2643		49.554	28.017	1	428620			20251	4801	11458	11459	25433;25434	25433					0.1324351409926976
KVAPAPAVVK	10	Unmodified	_KVAPAPAVVK_					0	0	0		RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENSG00000148303|ENST00000323345|RPL7A	RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant	RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.318359375	2	490.318577	978.622602	0.62926	0.00030854	-0.6929	-0.00033974	-0.063645	-3.1206E-05	490.3180979033188	20.811	0.73883	20.701	20.466	21.205	-0.11003					52	25	3	0	0	0	0.027406	2	2660	2660;2729		63.961	36.332	1	474660			20252	4801	11458	11459	25435;25436	25435					0.1324351409926976
KVAPAPAVVK	10	Unmodified	_KVAPAPAVVK_					0	0	0		RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENSG00000148303|ENST00000323345|RPL7A	RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant	RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.3183898925781	2	490.318577	978.622602	0.56546	0.00027726	-0.74409	-0.00036484	-0.17863	-8.7585E-05	490.3181016149083	20.688	0.69974	20.635	20.418	21.118	-0.05291					58	24	3	0	0	0	0.093201	1	2620	2620		49.554	28.017	1	506000			20253	4801	11458	11459	25437	25437					0.1324351409926976
KVAQATKP	8	Unmodified	_KVAQATKP_					0	0	0		ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7581787109375	2	421.758352	841.502152	-0.39718	-0.00016752	0.047825	2.0171E-05	-0.34936	-0.00014735	421.7582793047382	12.543	0.53654	12.543	12.364	12.9	0					36	17	3	0	0	0	0.26862	1	153	153		34.402	5.9072	1	321000			20254	6475	11459	11460	25438	25438					0.07506106105665822
KVAQATKP	8	Unmodified	_KVAQATKP_					0	0	0		ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.7580261230469	2	421.758352	841.502152	-0.28843	-0.00012165	0.19421	8.1908E-05	-0.09422	-3.9738E-05	421.7583011584997	12.546	0.62866	12.45	12.268	12.897	-0.096607					41	21	3	0	0	0	0.31518	1	149	149		29.082	3.6823	1	389360			20255	6475	11459	11460	25439	25439					0.07506106105665822
KVAQATKP	8	Unmodified	_KVAQATKP_					0	0	0		ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7582092285156	2	421.758352	841.502152	-0.3988	-0.0001682	0.27339	0.0001153	-0.12541	-5.2894E-05	421.75832135953124	12.582	0.50583	12.515	12.313	12.819	-0.06787					42	16	4	0	0	0	0.42371	1	156	156		14.838	3.198	1	317020			20256	6475	11459	11460	25440	25440					0.07506106105665822
KVAQQQRH	8	Unmodified	_KVAQQQRH_					0	0	0		nc|ENSG00000167772|Q9BY76-2|ANGPTL4;ENSG00000167772|ENST00000301455|ANGPTL4;ENST00000597137.5_1_19:8428195-8436046:+|nuORF;ENST00000598255.5_1_19:8429205-8436046:+|nuORF;ENST00000594348.1_1_19:8429070-8436049:+|nuORF	nc|ENSG00000167772|Q9BY76-2|ANGPTL4	nc|ENSG00000167772|Q9BY76-2|ANGPTL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7697448730469	2	497.780682	993.546811	0.33932	0.00016891	2.0286	0.0010098	2.3679	0.0011787	497.78182092275233	19.527	0.46655	19.412	19.233	19.7	-0.11592					26	15	2	0	0	0	0.45307	1	2345	2345		4.756	1.4747	1	64566			20257	6208	11460	11461	25441	25441					0.04977929971710182
KVATTVISK	9	Unmodified	_KVATTVISK_					0	0	0		nc|ENSG00000149131|P05155-3|SERPING1;ENSG00000149131|ENST00000278407|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7999572753906	2	473.800217	945.585882	0.025325	1.1999E-05	-1.0731	-0.00050842	-1.0477	-0.00049642	473.7997146919992	17.276	0.36212	17.158	16.993	17.355	-0.11739					17	12	2	0	0	0	0.32638	1	1606	1606		4.897	1.9018	1	63891			20258	4846	11461	11462	25442	25442					0.1109121748271491
KVATTVISK	9	Unmodified	_KVATTVISK_					0	0	0		nc|ENSG00000149131|P05155-3|SERPING1;ENSG00000149131|ENST00000278407|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2619323730469	2	473.800217	945.585882	0.28164	0.00013344	-0.69562	-0.00032959	-0.41399	-0.00019615	473.79990471120806	17.252	0.44611	17.192	17.026	17.472	-0.060431					29	15	3	0	0	0	0.26099	1	1597	1597		2.9952	0	1	86889			20259	4846	11461	11462	25443	25443					0.1109121748271491
KVCFPNLIF	9	Unmodified	_KVCFPNLIF_					0	0	0		ENST00000477950.1_1_7:881559-883270:+|nuORF;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1	ENST00000477950.1_1_7:881559-883270:+|nuORF	ENST00000477950.1_1_7:881559-883270:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2633666992188	2	540.799163	1079.58377	0.38967	0.00021073	-0.84965	-0.00045949	-0.45998	-0.00024876	541.299710369719	95.235	1.5184	95.318	94.485	96.004	0.082779					210	134	3	0	0	0	0.25622	1	25219	25219		7.2892	7.2892	1	179730			20260	10964	11462	11463	25444	25444					0.047164654732569034
KVDMKDVTKI	10	Unmodified	_KVDMKDVTKI_					0	0	0		nc|ENSG00000133863|Q9BXT5|TEX15;ENSG00000133863|ENST00000643185|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8063354492188	2	588.836474	1175.65839	0.67117	0.00039521	-0.50241	-0.00029584	0.16876	9.9371E-05	588.836151684596	50.396	0.82067	50.396	50.025	50.846	0					70	29	4	0	0	0	0.27655	1	11673	11673		30.703	5.7125	1	779580			20261	3735	11463	11464	25445	25445					0.0775918349395397
KVDMKDVTKI	10	Unmodified	_KVDMKDVTKI_					0	0	0		nc|ENSG00000133863|Q9BXT5|TEX15;ENSG00000133863|ENST00000643185|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.8367309570312	2	588.836474	1175.65839	0.94117	0.00055419	-0.63392	-0.00037327	0.30725	0.00018092	588.835999883681	50.358	0.81093	50.402	49.981	50.792	0.044891					68	29	3	0	0	0	0.24437	1	11708	11708		27.223	1.2025	1	718300			20262	3735	11463	11464	25446	25446					0.0775918349395397
KVEAIEHLL	9	Unmodified	_KVEAIEHLL_					0	0	0		ENST00000343855.5_1_7:150028109-150028460:+|nuORF	ENST00000343855.5_1_7:150028109-150028460:+|nuORF	ENST00000343855.5_1_7:150028109-150028460:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3165893554688	2	526.310949	1050.60735	0.24358	0.0001282	-0.14746	-7.7611E-05	0.096115	5.0586E-05	526.3102214576596	15.412	0.20399	15.302	15.204	15.408	-0.10981					11	6	2	0	0	0	0.33018	1	1028	1028		4.3292	0	1	24464			20263	9549	11464	11465	25447	25447					0.08406602511422534
KVEAIEHLL	9	Unmodified	_KVEAIEHLL_					0	0	0		ENST00000343855.5_1_7:150028109-150028460:+|nuORF	ENST00000343855.5_1_7:150028109-150028460:+|nuORF	ENST00000343855.5_1_7:150028109-150028460:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	526.310949	1050.60735	0.22702	0.00011948	-1.7949	-0.00094468	-1.5679	-0.00082519	526.3097015145596	15.283	0.14131	15.283	15.207	15.348	0	-0.0095132	-0.00053126	NaN	4.3292	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31069			20264	9549	11464	11465							0.08406602511422534
KVEERRPGWK	10	Unmodified	_KVEERRPGWK_					0	0	0			REV__ENST00000554136.1_1_14:104245060-104313644:-|nuORF	REV__ENST00000554136.1_1_14:104245060-104313644:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.9106750488281	3	428.910561	1283.70985	-0.11076	-4.7504E-05	-0.26198	-0.00011237	-0.37274	-0.00015987	428.9104845858453	31.215	0.66075	31.256	30.959	31.62	0.040989					67	23	4	0	0	0	0.37823	1	5836	5836		7.4771	3.6007	1	477100	+		20265	14011	11465	11466	25448	25448					0.07934688302884751
KVEEVKPLE	9	Unmodified	_KVEEVKPLE_					0	0	0		ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1;ENST00000471332.1_1_3:403392-405149:+|nuORF	ENSG00000134121|ENST00000256509|CHL1	ENSG00000134121|ENST00000256509|CHL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2776489257812	2	535.808239	1069.60193	0.39728	0.00021287	-3.2412	-0.0017367	-2.844	-0.0015238	535.8065525136461	41.014	0.41948	41.104	40.796	41.215	0.090248					20	15	2	0	0	0	0.12563	1	8708	8708		47.749	14.963	1	158830			20266	3757	11466	11467	25449	25449					0.06990878928968414
KVEHTIEF	8	Unmodified	_KVEHTIEF_					0	0	0			REV__ENST00000486019.1_1_22:39175456-39190144:-|nuORF	REV__ENST00000486019.1_1_22:39175456-39190144:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.282470703125	2	501.766374	1001.5182	0.93029	0.00046679	-0.30301	-0.00015204	0.62727	0.00031475	501.7664318885815	50.528	0.69223	50.573	50.343	51.035	0.044891					33	24	2	0	0	0	0.32435	1	11829	11829		16.942	4.4107	1	295910	+		20267	14173	11467	11468	25450	25450					0.01749767551905279
KVETWPSKW	9	Unmodified	_KVETWPSKW_					0	0	0			REV__ENST00000557950.5_1_15:59192841-59225743:-|nuORF	REV__ENST00000557950.5_1_15:59192841-59225743:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8086547851562	2	580.808574	1159.60259	0.32174	0.00018687	0.33969	0.0001973	0.66143	0.00038416	580.8084618165731	43.762	1.021	43.839	43.425	44.446	0.077515					103	37	4	0	0	0	0.13748	2	9609	9609;9654		32.786	0.86883	1	2464700	+		20268	22274	11468	11469	25451;25452	25451					0.029177183686670105
KVETWPSKW	9	Unmodified	_KVETWPSKW_					0	0	0			REV__ENST00000557950.5_1_15:59192841-59225743:-|nuORF	REV__ENST00000557950.5_1_15:59192841-59225743:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8088989257812	2	580.808574	1159.60259	0.33512	0.00019464	0.32427	0.00018834	0.65938	0.00038298	580.808465855075	43.789	1.2172	43.873	43.434	44.652	0.083996					114	44	4	0	0	0	0.11461	1	9598	9598		36.127	3.8215	1	2612300	+		20269	22274	11468	11469	25453	25453					0.029177183686670105
KVFAELRDV	9	Unmodified	_KVFAELRDV_					0	0	0			REV__ENSG00000124243|ENST00000371608|BCAS4	REV__ENSG00000124243|ENST00000371608|BCAS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7925415039062	2	538.808574	1075.60259	0.12886	6.9432E-05	-0.15595	-8.4028E-05	-0.027091	-1.4597E-05	538.8083712319306	28.117	0.47248	28.117	27.849	28.322	0.0004673					25	16	2	0	0	0	0.24581	1	4909	4909		16.942	4.4107	1	94522	+		20270	15226	11469	11470	25454	25454					0.06781718368665679
KVFAELRDV	9	Unmodified	_KVFAELRDV_					0	0	0			REV__ENSG00000124243|ENST00000371608|BCAS4	REV__ENSG00000124243|ENST00000371608|BCAS4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	538.808574	1075.60259	0.10223	5.5083E-05	-0.64334	-0.00034664	-0.54111	-0.00029155	538.8085370429485	28.091	0.43987	28.091	27.87	28.31	0	-0.033874	-0.00038912	NaN	16.942	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113100	+		20271	15226	11469	11470							0.06781718368665679
KVFAELRDV	9	Unmodified	_KVFAELRDV_					0	0	0			REV__ENSG00000124243|ENST00000371608|BCAS4	REV__ENSG00000124243|ENST00000371608|BCAS4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	538.808574	1075.60259	0.12994	7.0015E-05	-0.28708	-0.00015468	-0.15713	-8.4665E-05	538.8082393675104	28.17	0.54264	28.166	27.763	28.306	-0.0042572	0.041183	-5.2091E-06	NaN	16.942	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113660	+		20272	15226	11469	11470							0.06781718368665679
KVFAELRDV	9	Unmodified	_KVFAELRDV_					0	0	0			REV__ENSG00000124243|ENST00000371608|BCAS4	REV__ENSG00000124243|ENST00000371608|BCAS4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	538.808574	1075.60259	0.12886	6.9432E-05	-0.15595	-8.4028E-05	-0.027091	-1.4597E-05	538.8083712319306	28.117	0.47248	28.117	27.849	28.322	0.0004673	-0.0073086	0.00013609	NaN	16.942	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94522	+		20273	15226	11469	11470							0.06781718368665679
KVFAGYYTK	9	Unmodified	_KVFAGYYTK_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7925415039062	2	538.792392	1075.57023	0.32918	0.00017736	-0.023642	-1.2738E-05	0.30554	0.00016462	538.7924169398118	28.537	1.7646	28.537	28.181	29.945	0					192	62	5	0	0	0	4.216E-07	4	4969	4924;4969;5019;5066		163.69	151.48	1	9379500			20274	5048	11470	11471	25455;25456;25457;25458	25456					0.03546930965649153
KVFAGYYTK	9	Unmodified	_KVFAGYYTK_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.79248046875	2	538.792392	1075.57023	0.2911	0.00015684	0.024937	1.3436E-05	0.31604	0.00017028	538.7924458448249	28.536	1.6465	28.532	28.167	29.813	-0.0042572					174	57	5	0	0	0	4.216E-07	5	4979	4931;4979;5029;5078;5284		163.69	139.78	1	10513000			20275	5048	11470	11471	25459;25460;25461;25462;25463	25460					0.03546930965649153
KVFAGYYTK	9	Unmodified	_KVFAGYYTK_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.79248046875	2	538.792392	1075.57023	0.26342	0.00014193	0.044509	2.3981E-05	0.30793	0.00016591	538.7924531906981	28.524	2.0046	28.525	28.158	30.163	0.0004673					203	70	5	0	0	0	3.4202E-05	4	4956	4956;4997;5048;5103		151.48	117.84	1	9336000			20276	5048	11470	11471	25464;25465;25466;25467	25464					0.03546930965649153
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.8162841796875	2	545.816399	1089.61824	0.17788	9.7091E-05	0.21049	0.00011489	0.38838	0.00021198	545.816193164511	15.32	0.34474	15.32	15.1	15.445	0					28	11	4	0	0	0	0.18709	1	991	991		34.222	7.9536	1	167710			20277	4555	11471	11472	25468	25468					0.07702004885709357
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8164672851562	2	545.816399	1089.61824	0.37409	0.00020419	-0.1244	-6.7902E-05	0.24969	0.00013628	545.8161971004134	15.417	0.34325	15.307	15.121	15.464	-0.10981					19	11	2	0	0	0	0.28078	1	1048	1048		22.775	2.3604	1	159310			20278	4555	11471	11472	25469	25469					0.07702004885709357
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	545.816399	1089.61824	0.30495	0.00016645	-0.17412	-9.504E-05	0.13082	7.1405E-05	545.8161294146158	15.394	0.29954	15.329	15.158	15.457	-0.064414	0.010448	-0.00014736	NaN	34.222	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182410			20279	4555	11471	11472							0.07702004885709357
KVFDGIPPPY	10	Unmodified	_KVFDGIPPPY_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000468655.1_1_19:49994004-49994437:+|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3;ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A;ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.8055419921875	2	566.8055	1131.59645	0.78659	0.00044585	-0.49373	-0.00027985	0.29286	0.00016599	566.8051992573369	56.09	1.9839	56.09	55.482	57.466	0					122	72	3	0	0	0	0.058058	4	13383	13331;13383;13435;13489		57.249	43.634	1	2310200			20280	4450;10894	11472	11473	25470;25471;25472;25473	25471					0.03591200137134365
KVFDGIPPPY	10	Unmodified	_KVFDGIPPPY_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000468655.1_1_19:49994004-49994437:+|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3;ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A;ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.8057250976562	2	566.8055	1131.59645	0.81194	0.00046021	-0.46663	-0.00026449	0.34531	0.00019572	566.8051889111202	55.961	1.8567	56.032	55.501	57.357	0.070885					136	68	3	0	0	0	0.023567	3	13374	13330;13374;13431		67.838	45.102	1	1961400			20281	4450;10894	11472	11473	25474;25475;25476	25475					0.03591200137134365
KVFDGIPPPY	10	Unmodified	_KVFDGIPPPY_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;ENST00000468655.1_1_19:49994004-49994437:+|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3;ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A;ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.8054809570312	2	566.8055	1131.59645	0.77772	0.00044082	-0.39303	-0.00022277	0.38469	0.00021804	566.8051818338103	56.23	1.9039	56.211	55.565	57.469	-0.019081					131	69	3	0	0	0	0.058058	3	13455	13402;13455;13504		57.249	40.362	1	2638600			20282	4450;10894	11472	11473	25477;25478;25479	25478					0.03591200137134365
KVFDINLKEK	10	Unmodified	_KVFDINLKEK_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.9114990234375	3	411.911568	1232.71287	-0.95953	-0.00039524	0.61614	0.00025379	-0.34339	-0.00014145	411.9118491983219	34.555	0.95306	34.555	34.247	35.2	0					87	33	4	0	0	0	0.002	1	6791	6791		89.533	43.931	1	931910			20283	5701	11473	11474	25480	25480					0.105825186370339
KVFDINLKEK	10	Unmodified	_KVFDINLKEK_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.9114685058594	3	411.911568	1232.71287	-0.77147	-0.00031778	0.38402	0.00015818	-0.38745	-0.00015959	411.91175442023774	34.424	0.96637	34.499	34.185	35.151	0.075306					90	34	4	0	0	0	0.0042491	1	6761	6761		85.729	32.26	1	948480			20284	5701	11473	11474	25481	25481					0.105825186370339
KVFDINLKEK	10	Unmodified	_KVFDINLKEK_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.9115295410156	3	411.911568	1232.71287	-0.27805	-0.00011453	-0.06492	-2.6741E-05	-0.34298	-0.00014128	411.91153486211067	34.395	1.0061	34.472	34.11	35.116	0.077377					96	35	4	0	0	0	0.00039794	2	6746	6746;6799		106.29	54.096	1	1019000			20285	5701	11473	11474	25482;25483	25482					0.105825186370339
KVFGGTVHKK	10	Unmodified	_KVFGGTVHKK_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.8322143554688	2	550.832383	1099.65021	0.041794	2.3022E-05	0.16579	9.132E-05	0.20758	0.00011434	550.8325796626518	13.105	0.76	13.105	12.9	13.66	0					81	26	5	0	0	0	0.0021517	3	308	296;308;351		108.26	75.957	1	2193500			20286	5716	11474	11475	25484;25485;25486	25485					0.10437417359503343
KVFGGTVHKK	10	Unmodified	_KVFGGTVHKK_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.832275390625	2	550.832383	1099.65021	0.098289	5.4141E-05	0.1424	7.8441E-05	0.24069	0.00013258	550.8325529723265	13.18	0.87621	13.08	12.814	13.69	-0.099291					79	30	5	0	0	0	1.1871E-08	2	338	338;389		165.58	125.63	1	2401900			20287	5716	11474	11475	25487;25488	25487					0.10437417359503343
KVFGGTVHKK	10	Unmodified	_KVFGGTVHKK_					0	0	0		ENSG00000163655|ENST00000496455|GMPS;nc|ENSG00000163655|P49915-2|GMPS	ENSG00000163655|ENST00000496455|GMPS	ENSG00000163655|ENST00000496455|GMPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.8323974609375	2	550.832383	1099.65021	-0.0046429	-2.5575E-06	0.24747	0.00013632	0.24283	0.00013376	550.8325776620129	13.152	0.78201	13.085	12.878	13.66	-0.067496					91	27	5	0	0	0	0.0012219	2	325	325;367		117.84	84.393	1	2026000			20288	5716	11474	11475	25489;25490	25489					0.10437417359503343
KVFKQIFSK	9	Unmodified	_KVFKQIFSK_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.322509765625	2	562.844959	1123.67537	0.10014	5.6363E-05	0.42687	0.00024026	0.52701	0.00029662	562.8452060188929	27.465	0.39734	27.444	27.349	27.746	-0.021412					20	13	2	0	0	0	0.23749	1	4663	4663		20.415	4.5674	1	103980			20289	2762	11475	11476	25491	25491					0.11847472162094164
KVFLLAGLVK	10	Unmodified	_KVFLLAGLVK_					0	0	0			REV__ENSG00000181029|ENST00000596148|TRAPPC5	REV__ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3658447265625	2	544.365527	1086.7165	0.59578	0.00032432	-0.014379	-7.8276E-06	0.5814	0.00031649	544.365345471132	49.746	0.59568	49.79	49.54	50.136	0.044891					54	22	3	0	0	0	0.29092	1	11464	11464		21.537	2.28	1	987530	+		20290	18131	11476	11477	25492	25492					0.1766123320155657
KVFLLAGLVK	10	Unmodified	_KVFLLAGLVK_					0	0	0			REV__ENSG00000181029|ENST00000596148|TRAPPC5	REV__ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3656005859375	2	544.365527	1086.7165	0.58999	0.00032117	0.048763	2.6545E-05	0.63876	0.00034772	544.3653641168535	49.708	0.61212	49.729	49.483	50.095	0.020691					53	22	3	0	0	0	0.37133	1	11453	11453		8.7454	0.15213	1	851270	+		20291	18131	11476	11477	25493	25493					0.1766123320155657
KVFLMKYNNK	10	Unmodified	_KVFLMKYNNK_					0	0	0			REV__ENST00000555080.1_1_14:44589415-44589487:-|nuORF	REV__ENST00000555080.1_1_14:44589415-44589487:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.91046142578125	3	428.909281	1283.70601	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.357	1	31.399	30.899	31.899	0.042364								0	0	0	0.36386	1	5850	5850		8.9762	1.9392	1		+		20292	22243	11477	11478	25494	25494					0.07550882484815702
KVFNQPKAK	9	Unmodified	_KVFNQPKAK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3170166015625	2	530.319109	1058.62366	0.1281	6.7932E-05	-2.6819	-0.0014223	-2.5538	-0.0013543	530.3176065726772	13.956	0.29122	13.89	13.716	14.007	-0.066068					17	9	2	0	0	0	0.25314	1	580	580		15.847	5.0233	1	125520			20293	6847	11478	11479	25495	25495					0.09669728468156791
KVFNQPKAK	9	Unmodified	_KVFNQPKAK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	530.319109	1058.62366	0.17664	9.3678E-05	-2.9713	-0.0015757	-2.7946	-0.001482	530.317507228551	13.86	0.37215	13.86	13.714	14.086	0	-0.0086736	-4.579E-05	NaN	15.847	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122850			20294	6847	11478	11479							0.09669728468156791
KVFNQPKAK	9	Unmodified	_KVFNQPKAK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	530.319109	1058.62366	0.023776	1.2609E-05	-2.9952	-0.0015884	-2.9714	-0.0015758	530.317304330071	13.96	0.30668	13.856	13.685	13.991	-0.10466	-0.01296	-7.1127E-05	NaN	15.847	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119160			20295	6847	11478	11479							0.09669728468156791
KVFQEPLFY	9	Unmodified	_KVFQEPLFY_					0	0	0		nc|ENSG00000135047|P07711-3|CTSL;ENSG00000135047|ENST00000343150|CTSL	nc|ENSG00000135047|P07711-3|CTSL	nc|ENSG00000135047|P07711-3|CTSL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.252685546875	2	585.813325	1169.6121	0.24763	0.00014506	0.21151	0.0001239	0.45913	0.00026897	586.3148453822935	60.931	0.40686	61.028	60.978	61.385	0.096985					19	14	2	0	0	0	0.14306	1	14959	14959		38.615	21.672	1	999210			20296	3840	11479	11480	25496	25496					0.03407486654191416
KVFTEHQTK	9	Unmodified	_KVFTEHQTK_					0	0	0			REV__L1PA7_dup4105|chr5:32794707-32799584:+|1.4734764400816625|0.3370285026521366|2.13|528.0|109|3|sense	REV__L1PA7_dup4105|chr5:32794707-32799584:+|1.4734764400816625|0.3370285026521366|2.13|528.0|109|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.3038330078125	2	559.303655	1116.59276	-0.064623	-3.6144E-05	0.2114	0.00011824	0.14678	8.2093E-05	559.3035146082402	14.669	0.43947	14.603	14.289	14.728	-0.066068					32	15	3	0	0	0	0.33508	1	801	801		3.5965	0.60125	1	45346	+		20297	22824	11480	11481	25497	25497					0.03912530363277256
KVGEELGIV	9	Unmodified	_KVGEELGIV_					0	0	0			REV__TRIM5|p.R480Ffs*3|1|0.06|ENSG00000132256|chr11:5664854-5664855|-/TTTGAAC|frameshift_variant	REV__TRIM5|p.R480Ffs*3|1|0.06|ENSG00000132256|chr11:5664854-5664855|-/TTTGAAC|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.28973388671875	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.668	1	53.724	53.224	54.224	0.056255								0	0	0	0.21726	1	12689	12689		16.942	4.7016	1		+		20298	15555	11481	11482	25498	25498					0.0650293821172454
KVGEVIVTK	9	Unmodified	_KVGEVIVTK_					0	0	0		ENST00000420325.1_1_13:38567761-38567950:-|nuORF;ENST00000388967.3_1_3:36809128-36809431:-|nuORF;ENSG00000144381|ENST00000388968|HSPD1	ENST00000420325.1_1_13:38567761-38567950:-|nuORF	ENST00000420325.1_1_13:38567761-38567950:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.8082580566406	2	486.808042	971.601532	0.22942	0.00011169	0.42339	0.00020611	0.65281	0.00031779	486.8081321992872	21.894	0.50015	21.894	21.517	22.017	0					34	18	2	0	0	0	0.053792	1	2962	2962		51.488	7.5061	1	457910			20299	4579	11482	11483	25499	25499					0.11459503999753906
KVGEVIVTK	9	Unmodified	_KVGEVIVTK_					0	0	0		ENST00000420325.1_1_13:38567761-38567950:-|nuORF;ENST00000388967.3_1_3:36809128-36809431:-|nuORF;ENSG00000144381|ENST00000388968|HSPD1	ENST00000420325.1_1_13:38567761-38567950:-|nuORF	ENST00000420325.1_1_13:38567761-38567950:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.80816650390625	2	486.808042	971.601532	0.28906	0.00014072	0.2507	0.00012204	0.53976	0.00026276	486.80806110167805	21.958	0.54692	21.857	21.498	22.045	-0.10034					47	19	3	0	0	0	0.1269	1	2992	2992		51.488	7.5061	1	466920			20300	4579	11482	11483	25500	25500					0.11459503999753906
KVGIIGTST	9	Unmodified	_KVGIIGTST_					0	0	0			REV__ENST00000543995.5_1_12:6442265-6443279:-|nuORF	REV__ENST00000543995.5_1_12:6442265-6443279:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.24786376953125	2	438.263468	874.512382	0.2614	0.00011456	-0.45612	-0.0001999	-0.19472	-8.534E-05	438.262672513694	20.885	0.90647	20.833	20.327	21.233	-0.05291					53	31	3	0	0	0	0.24688	1	2534	2534		14.838	0.93222	1	144050	+		20301	22152	11483	11484	25501	25501					0.07010669040232642
KVGTGARVPN	10	Unmodified	_KVGTGARVPN_					0	0	0		ENST00000498008.5_1_1:46809470-46809617:+|nuORF	ENST00000498008.5_1_1:46809470-46809617:+|nuORF	ENST00000498008.5_1_1:46809470-46809617:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8033752441406	2	499.790715	997.566878	0.13159	6.5767E-05	-0.78661	-0.00039314	-0.65502	-0.00032737	499.7903657533485	15.558	0.37762	15.558	15.413	15.791	0					17	12	2	0	0	0	0.32054	1	1076	1076		0.30703	0	1	21860			20302	11251	11484	11485	25502	25502					0.06799680911660744
KVHSPKKR	8	Unmodified	_KVHSPKKR_					0	0	0		ENST00000357103.4_1_12:1863438-1863513:+|nuORF	ENST00000357103.4_1_12:1863438-1863513:+|nuORF	ENST00000357103.4_1_12:1863438-1863513:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.3111572265625	2	490.311618	978.608683	-0.028504	-1.3976E-05	-0.11543	-5.6596E-05	-0.14393	-7.0572E-05	490.31131277501083	12.314	0.22301	12.314	12.245	12.468	0					16	6	4	0	0	0	0.43043	1	94	94		12.532	1.7076	1	62574			20303	9629	11485	11486	25503	25503					0.11852281390849839
KVHSPKKR	8	Unmodified	_KVHSPKKR_					0	0	0		ENST00000357103.4_1_12:1863438-1863513:+|nuORF	ENST00000357103.4_1_12:1863438-1863513:+|nuORF	ENST00000357103.4_1_12:1863438-1863513:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.31134033203125	2	490.311618	978.608683	0.05191	2.5452E-05	-0.38426	-0.00018841	-0.33235	-0.00016295	490.31121764140613	12.307	0.20717	12.21	12.148	12.356	-0.096607					11	6	2	0	0	0	0.44389	1	101	101		7.9102	3.9658	1	54918			20304	9629	11485	11486	25504	25504					0.11852281390849839
KVHSPKKR	8	Unmodified	_KVHSPKKR_					0	0	0		ENST00000357103.4_1_12:1863438-1863513:+|nuORF	ENST00000357103.4_1_12:1863438-1863513:+|nuORF	ENST00000357103.4_1_12:1863438-1863513:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.3113098144531	2	490.311618	978.608683	-0.11441	-5.6098E-05	-0.038602	-1.8927E-05	-0.15302	-7.5025E-05	490.31140451635616	12.335	0.29369	12.267	12.083	12.377	-0.06806					19	10	4	0	0	0	0.45431	1	107	107		4.3292	0	1	57798			20305	9629	11485	11486	25505	25505					0.11852281390849839
KVHYGFILK	9	Unmodified	_KVHYGFILK_					0	0	0		nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH	nc|ENSG00000198363|Q12797-10|ASPH	nc|ENSG00000198363|Q12797-10|ASPH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7936401367188	2	552.831852	1103.64915	-1.1491	-0.00063523	-0.030479	-1.685E-05	-1.1795	-0.00065208	552.8318754123969	34.821	0.44377	34.821	34.618	35.062	0					24	15	2	0	0	0	0.20881	1	6911	6911		27.629	14.586	1	217070			20306	8064	11486	11487	25506	25506					0.10147202990606274
KVHYGFILK	9	Unmodified	_KVHYGFILK_					0	0	0		nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH	nc|ENSG00000198363|Q12797-10|ASPH	nc|ENSG00000198363|Q12797-10|ASPH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.79345703125	2	552.831852	1103.64915	-1.2636	-0.00069855	0.16012	8.8522E-05	-1.1035	-0.00061003	552.8318362439998	34.701	0.57453	34.776	34.549	35.123	0.075306					29	20	2	0	0	0	0.22674	1	6859	6859		22.736	6.8891	1	219760			20307	8064	11486	11487	25507	25507					0.10147202990606274
KVHYGFILK	9	Unmodified	_KVHYGFILK_					0	0	0		nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH	nc|ENSG00000198363|Q12797-10|ASPH	nc|ENSG00000198363|Q12797-10|ASPH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7936401367188	2	552.831852	1103.64915	-0.46435	-0.00025671	-0.48239	-0.00026668	-0.94674	-0.00052339	552.8315012740204	34.715	0.52726	34.793	34.533	35.06	0.077377					27	18	2	0	0	0	0.20167	1	6863	6863		29.082	13.234	1	224060			20308	8064	11486	11487	25508	25508					0.10147202990606274
KVIGTIQIL	9	Unmodified	_KVIGTIQIL_					0	0	0		nc|ENSG00000110077|Q9H2W1|MS4A6A;ENSG00000110077|ENST00000528851|MS4A6A;nc|ENSG00000110077|Q9H2W1-5|MS4A6A;nc|ENSG00000110077|Q9H2W1-4|MS4A6A;ENST00000530179.1_1_11:59945684-59950490:-|nuORF;nc|ENSG00000110077|Q9H2W1-3|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2818603515625	2	492.826235	983.637917	0.44495	0.00021928	-0.25238	-0.00012438	0.19257	9.4905E-05	492.8260212601423	57.488	0.85876	57.488	57.216	58.075	0					74	30	4	0	0	0	0.1303	1	13866	13866		49.527	22.644	1	2051500			20309	12646	11487	11488	25509	25509					0.14544380896461462
KVIGTIQIL	9	Unmodified	_KVIGTIQIL_					0	0	0		nc|ENSG00000110077|Q9H2W1|MS4A6A;ENSG00000110077|ENST00000528851|MS4A6A;nc|ENSG00000110077|Q9H2W1-5|MS4A6A;nc|ENSG00000110077|Q9H2W1-4|MS4A6A;ENST00000530179.1_1_11:59945684-59950490:-|nuORF;nc|ENSG00000110077|Q9H2W1-3|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.28192138671875	2	492.826235	983.637917	0.39572	0.00019502	-0.17046	-8.4008E-05	0.22526	0.00011101	492.82605037128525	57.366	0.70725	57.451	57.184	57.891	0.085621					63	25	3	0	0	0	0.16039	1	13827	13827		42.312	11.044	1	2443500			20310	12646	11487	11488	25510	25510					0.14544380896461462
KVIGTIQIL	9	Unmodified	_KVIGTIQIL_					0	0	0		nc|ENSG00000110077|Q9H2W1|MS4A6A;ENSG00000110077|ENST00000528851|MS4A6A;nc|ENSG00000110077|Q9H2W1-5|MS4A6A;nc|ENSG00000110077|Q9H2W1-4|MS4A6A;ENST00000530179.1_1_11:59945684-59950490:-|nuORF;nc|ENSG00000110077|Q9H2W1-3|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2818908691406	2	492.826235	983.637917	0.20779	0.00010241	-0.26411	-0.00013016	-0.056321	-2.7756E-05	492.8260163935378	57.502	0.8353	57.484	57.197	58.033	-0.0172					70	30	4	0	0	0	0.1303	1	13876	13876		49.527	13.4	1	1861100			20311	12646	11487	11488	25511	25511					0.14544380896461462
KVIRNHQRS	9	Unmodified	_KVIRNHQRS_					0	0	0			REV__ENSG00000237452|ENST00000457052|MEIOSIN	REV__ENSG00000237452|ENST00000457052|MEIOSIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.78857421875	2	569.333613	1136.65267	0.15342	8.7345E-05	0.34702	0.00019757	0.50044	0.00028492	569.3337076570864	15.344	0.70141	15.234	14.877	15.579	-0.10981					34	24	2	0	0	0	0.26262	1	1034	1034		0.45834	0.45834	1	38814	+		20312	19155	11488	11489	25512	25512					0.08981265817169515
KVISKDLVIER	11	Unmodified	_KVISKDLVIER_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.P1391Qfs*3|1|0.19|ENSG00000117523|chr1:171541644-171541648|CAAGA/-|frameshift_variant;PRRC2C|p.I2096Ffs*11|1|0.06|ENSG00000117523|chr1:171566405-171566406|-/ATTCT|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.9379577636719	3	433.938005	1298.79219	-0.02848	-1.2359E-05	-0.11535	-5.0055E-05	-0.14383	-6.2414E-05	433.9379369983597	30.358	0.50771	30.358	30.167	30.674	0					40	17	3	0	0	0	0.31757	1	5565	5565		20.648	13.988	1	317330			20313	12673	11489	11490	25513	25513					0.15474165591172095
KVISKDLVIER	11	Unmodified	_KVISKDLVIER_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.P1391Qfs*3|1|0.19|ENSG00000117523|chr1:171541644-171541648|CAAGA/-|frameshift_variant;PRRC2C|p.I2096Ffs*11|1|0.06|ENSG00000117523|chr1:171566405-171566406|-/ATTCT|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.9379577636719	3	433.938005	1298.79219	0.053618	2.3267E-05	-0.19421	-8.4273E-05	-0.14059	-6.1006E-05	433.93787501163166	30.336	0.53416	30.364	30.131	30.665	0.027948					43	18	4	0	0	0	0.13747	1	5556	5556		36.822	23.287	1	328420			20314	12673	11489	11490	25514	25514					0.15474165591172095
KVISKDLVIER	11	Unmodified	_KVISKDLVIER_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.P1391Qfs*3|1|0.19|ENSG00000117523|chr1:171541644-171541648|CAAGA/-|frameshift_variant;PRRC2C|p.I2096Ffs*11|1|0.06|ENSG00000117523|chr1:171566405-171566406|-/ATTCT|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.9380187988281	3	433.938005	1298.79219	-0.36726	-0.00015937	0.2312	0.00010033	-0.13606	-5.9043E-05	433.93806294912713	30.375	0.47823	30.402	30.16	30.638	0.027157					48	16	4	0	0	0	0.26966	1	5561	5561		24.951	15.421	1	305450			20315	12673	11489	11490	25515	25515					0.15474165591172095
KVIVRFLTV	9	Unmodified	_KVIVRFLTV_					0	0	0		ENSG00000134419|ENST00000322989|RPS15A;ENST00000573554.1_1_16:18800267-18800435:-|nuORF	ENSG00000134419|ENST00000322989|RPS15A	ENSG00000134419|ENST00000322989|RPS15A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.313720703125	2	537.855327	1073.6961	0.59063	0.00031767	-0.097171	-5.2264E-05	0.49346	0.00026541	537.8552279678554	51.483	0.37689	51.483	51.271	51.648	0					20	13	2	0	0	0	0.24471	1	11985	11985		17.113	7.039	1	287470			20316	3783	11490	11491	25516	25516					0.16220062541719926
KVIVRFLTV	9	Unmodified	_KVIVRFLTV_					0	0	0		ENSG00000134419|ENST00000322989|RPS15A;ENST00000573554.1_1_16:18800267-18800435:-|nuORF	ENSG00000134419|ENST00000322989|RPS15A	ENSG00000134419|ENST00000322989|RPS15A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2684326171875	2	537.855327	1073.6961	0.38357	0.00020631	0.056838	3.057E-05	0.44041	0.00023688	537.8554710535765	51.486	0.3251	51.532	51.347	51.673	0.046577					18	11	2	0	0	0	0.24636	1	12016	12016		11.495	7.1655	1	347720			20317	3783	11490	11491	25517	25517					0.16220062541719926
KVIVRFLTV	9	Unmodified	_KVIVRFLTV_					0	0	0		ENSG00000134419|ENST00000322989|RPS15A;ENST00000573554.1_1_16:18800267-18800435:-|nuORF	ENSG00000134419|ENST00000322989|RPS15A	ENSG00000134419|ENST00000322989|RPS15A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2689819335938	2	537.855327	1073.6961	0.49088	0.00026402	-0.02873	-1.5453E-05	0.46215	0.00024857	537.8553856148931	51.558	0.56563	51.568	51.373	51.939	0.0095673					29	20	2	0	0	0	0.23749	1	12021	12021		15.248	7.3383	1	263370			20318	3783	11490	11491	25518	25518					0.16220062541719926
KVIYPINQK	9	Unmodified	_KVIYPINQK_					0	0	0		ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8347778320312	2	551.834591	1101.65463	0.22344	0.0001233	-0.022759	-1.2559E-05	0.20069	0.00011075	551.8344707731317	25.63	0.35571	25.63	25.413	25.769	0					26	11	3	0	0	0	0.079752	1	4107	4107		41.84	19.103	1	158630			20319	991	11491	11492	25519	25519					0.10786881782405544
KVIYPINQK	9	Unmodified	_KVIYPINQK_					0	0	0		ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2827758789062	2	551.834591	1101.65463	0.11501	6.3469E-05	0.16059	8.8618E-05	0.2756	0.00015209	551.8346279032071	25.637	0.39172	25.581	25.341	25.732	-0.055931					29	13	3	0	0	0	0.25988	1	4077	4077		3.9444	0.94915	1	146470			20320	991	11491	11492	25520	25520					0.10786881782405544
KVIYPINQK	9	Unmodified	_KVIYPINQK_					0	0	0		ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.83447265625	2	551.834591	1101.65463	0.11135	6.1449E-05	0.21971	0.00012124	0.33106	0.00018269	551.8345541506235	25.678	0.44528	25.656	25.388	25.833	-0.022236					36	15	3	0	0	0	0.23767	1	4119	4119		18.146	5.9057	1	181760			20321	991	11491	11492	25521	25521					0.10786881782405544
KVKAKSELP	9	Unmodified	_KVKAKSELP_					0	0	0		ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7907409667969	2	500.313492	998.612431	0.27507	0.00013762	-0.49401	-0.00024716	-0.21894	-0.00010954	500.31318692216814	22.108	0.33821	22.108	21.94	22.278	0					16	11	2	0	0	0	0.26068	1	3050	3050		3.2813	0.97858	1	39000			20322	638	11492	11493	25522	25522					0.11306906374034043
KVKAKSELP	9	Unmodified	_KVKAKSELP_					0	0	0		ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.790771484375	2	500.313492	998.612431	0.16416	8.2131E-05	0.22397	0.00011206	0.38813	0.00019419	500.3138478152678	22.156	0.28491	22.107	22.005	22.29	-0.049377					15	9	2	0	0	0	0.26068	1	3080	3080		3.2813	0	1	65846			20323	638	11492	11493	25523	25523					0.11306906374034043
KVKCHAPPIY	10	Unmodified	_KVKCHAPPIY_					0	0	0			REV__ENSG00000186566|ENST00000591680|GPATCH8	REV__ENSG00000186566|ENST00000591680|GPATCH8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3213500976562	2	578.320794	1154.62703	0.31024	0.00017942	0.25437	0.00014711	0.56461	0.00032653	578.3207372612743	82.173	2.3333	82.242	81.461	83.795	0.068985					204	95	3	0	0	0	0.39536	1	21343	21343		4.3292	0	1	1075100	+		20324	18453	11493	11494	25524	25524					0.055906552505121
KVKIDKRFRA	10	Unmodified	_KVKIDKRFRA_					0	0	0		ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.9349060058594	3	420.934818	1259.78262	0.11081	4.6643E-05	0.049567	2.0865E-05	0.16038	6.7508E-05	420.9347882456033	32.013	1.4507	32.013	31.694	33.145	0					126	51	3	0	0	0	0.40085	1	6031	6031		3.3196	0	1	1018700			20325	1342	11494	11495	25525	25525					0.1631244209631859
KVKLSALMT	9	Unmodified	_KVKLSALMT_					0	0	0			REV__nc|ENSG00000132359|Q684P5-2|RAP1GAP2	REV__nc|ENSG00000132359|Q684P5-2|RAP1GAP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7969970703125	2	495.804445	989.594338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.706	1	87.706	87.206	88.206	0								0	0	0	0.22933	1	23138	23138		13.042	0	1		+		20326	15564	11495	11496	25526	25526					0.09912448127693096
KVKMWEFT	8	Unmodified	_KVKMWEFT_					0	0	0			REV__ENSG00000128645|ENST00000331462|HOXD1	REV__ENSG00000128645|ENST00000331462|HOXD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.8103637695312	2	534.78097	1067.54739	0.40777	0.00021807	0.33102	0.00017702	0.73879	0.00039509	534.781113585069	33.281	0.4941	33.336	33.171	33.665	0.055309					26	17	2	0	0	0	0.34218	1	6392	6392		9.3474	0.75416	1	175360	+		20327	15382	11496	11497	25527	25527					0.016315885765152416
KVKVIRQVE	9	Unmodified	_KVKVIRQVE_					0	0	0			REV__nc|ENSG00000127463|Q8N766-4|EMC1	REV__nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.296875	2	549.853316	1097.69208	0.35004	0.00019247	1.4545	0.00079976	1.8046	0.00099224	549.8542825260852	73.856	0.4747	73.825	73.636	74.111	-0.030663					26	16	2	0	0	0	0.24848	1	18910	18910		2.9952	0	1	344240	+		20328	15341	11497	11498	25528	25528					0.14713973048060325
KVKVVGRCE	9	Unmodified	_KVKVVGRCE_					0	0	0			REV__nc|ENSG00000174233|O43306-2|ADCY6	REV__nc|ENSG00000174233|O43306-2|ADCY6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7413330078125	2	509.297319	1016.58008	-0.076349	-3.8884E-05	-2.4711	-0.0012585	-2.5475	-0.0012974	509.2959773403736	18.484	0.37284	18.426	18.227	18.6	-0.058174					15	12	2	0	0	0	0.26031	1	1894	1894		3.5965	1.019	1	41858	+		20329	17821	11498	11499	25529	25529					0.07245795699395785
KVLDAIIQEK	10	Unmodified	_KVLDAIIQEK_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;SMC4|p.N1243Mfs*5|1|0.2|ENSG00000113810|chr3:160433665-160433665|A/-|frameshift_variant;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.8499145507812	2	578.850438	1155.68632	-0.11348	-6.5688E-05	0.013396	7.7545E-06	-0.10008	-5.7933E-05	578.8505163927329	38.731	0.59244	38.731	38.597	39.189	0					45	20	3	0	0	0	3.3208E-05	2	8087	8087;8134		136.27	69.253	1	1062600			20330	2532	11499	11500	25530;25531	25530					0.11470829745667288
KVLDAIIQEK	10	Unmodified	_KVLDAIIQEK_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;SMC4|p.N1243Mfs*5|1|0.2|ENSG00000113810|chr3:160433665-160433665|A/-|frameshift_variant;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.8506469726562	2	578.850438	1155.68632	0.41806	0.00024199	-0.36942	-0.00021384	0.048636	2.8153E-05	578.850100506374	38.653	0.35559	38.751	38.596	38.951	0.097527					32	12	3	0	0	0	1.6646E-05	3	8060	8033;8060;8109		146.57	77.236	1	1064400			20331	2532	11499	11500	25532;25533;25534	25533					0.11470829745667288
KVLDKIVHY	9	Unmodified	_KVLDKIVHY_					0	0	0		ENSG00000198075|ENST00000272452|SULT1C4;nc|ENSG00000198075|O75897-2|SULT1C4;ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	ENSG00000198075|ENST00000272452|SULT1C4	ENSG00000198075|ENST00000272452|SULT1C4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.8345947265625	2	557.834591	1113.65463	-0.74576	-0.00041601	0.16639	9.2816E-05	-0.57937	-0.00032319	557.8346103439189	34.504	0.63438	34.58	34.129	34.763	0.075306					34	22	2	0	0	0	0.01909	1	6805	6805		65.474	31.072	1	193930			20332	8035	11500	11501	25535	25535					0.1023488178241223
KVLDKIVHY	9	Unmodified	_KVLDKIVHY_					0	0	0		ENSG00000198075|ENST00000272452|SULT1C4;nc|ENSG00000198075|O75897-2|SULT1C4;ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	ENSG00000198075|ENST00000272452|SULT1C4	ENSG00000198075|ENST00000272452|SULT1C4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	557.834591	1113.65463	-0.67924	-0.0003789	0.4026	0.00022458	-0.27664	-0.00015432	557.8348272047673	34.572	0.49842	34.572	34.277	34.775	0	-0.0037772	8.9888E-05	NaN	65.474	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201140			20333	8035	11500	11501							0.1023488178241223
KVLDKLLLY	9	Unmodified	_KVLDKLLLY_					0	0	0		nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3041381835938	2	552.854993	1103.69543	0.56957	0.00031489	-0.99291	-0.00054894	-0.42334	-0.00023405	552.8544366920207	55.104	0.51323	55.104	54.917	55.431	0					32	18	3	0	0	0	0.18479	1	13104	13104		22.658	15.935	1	398090			20334	1294	11501	11502	25536	25536					0.1477322310204272
KVLDKLLLY	9	Unmodified	_KVLDKLLLY_					0	0	0		nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.8544921875	2	552.854993	1103.69543	0.64248	0.0003552	-1.216	-0.00067225	-0.57348	-0.00031705	552.8543756195389	55.09	0.39978	55.161	54.971	55.371	0.070885					26	14	2	0	0	0	0.1303	1	13138	13138		42.312	18.292	1	542330			20335	1294	11501	11502	25537	25537					0.1477322310204272
KVLDKLLLY	9	Unmodified	_KVLDKLLLY_					0	0	0		nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.8544311523438	2	552.854993	1103.69543	0.49055	0.0002712	-0.66864	-0.00036966	-0.1781	-9.8461E-05	552.8545939918218	55.238	0.43115	55.219	55.003	55.434	-0.019081					25	15	2	0	0	0	0.07848	1	13193	13193		42.312	20.566	1	482900			20336	1294	11501	11502	25538	25538					0.1477322310204272
KVLDKPSRLT	10	Unmodified	_KVLDKPSRLT_					0	0	0		nc|ENSG00000134283|Q8NEY8-7|PPHLN1;ENST00000547440.1_1_12:42781241-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-5|PPHLN1;ENST00000552202.5_1_12:42726503-42792805:+|nuORF;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1	nc|ENSG00000134283|Q8NEY8-7|PPHLN1	nc|ENSG00000134283|Q8NEY8-7|PPHLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.8499145507812	2	578.856055	1155.69756	0.37046	0.00021444	-0.68792	-0.0003982	-0.31746	-0.00018376	578.8552628794213	38.273	0.98356	38.364	38.042	39.026	0.090881					93	35	4	0	0	0	0.025736	1	8077	8077		65.474	4.3838	1	5283100			20337	3771	11502	11503	25539	25539					0.12593651839847553
KVLDKVFR	8	Unmodified	_KVLDKVFR_					0	0	0		ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;nc|ENSG00000154305|Q5JRA6-2|MIA3	ENSG00000154305|ENST00000344922|MIA3	ENSG00000154305|ENST00000344922|MIA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.29278564453125	2	502.816202	1003.61785	0.16349	8.2205E-05	-0.1939	-9.7496E-05	-0.030411	-1.5291E-05	502.81598373517977	16.006	0.42646	16.006	15.816	16.242	0					31	14	3	0	0	0	0.34313	1	1195	1195		6.7232	0	1	73470			20338	5120	11503	11504	25540	25540					0.11618629956512905
KVLDKVFR	8	Unmodified	_KVLDKVFR_					0	0	0		ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;nc|ENSG00000154305|Q5JRA6-2|MIA3	ENSG00000154305|ENST00000344922|MIA3	ENSG00000154305|ENST00000344922|MIA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2928466796875	2	502.816202	1003.61785	0.12148	6.1083E-05	-0.24861	-0.00012501	-0.12713	-6.3924E-05	502.8159849558155	16.128	0.43758	16.013	15.866	16.304	-0.11434					25	14	3	0	0	0	0.34198	1	1244	1244		10.824	0	1	95401			20339	5120	11503	11504	25541	25541					0.11618629956512905
KVLDLLWI	8	Unmodified	_KVLDLLWI_					0	0	0		ENSG00000157350|ENST00000342907|ST3GAL2	ENSG00000157350|ENST00000342907|ST3GAL2	ENSG00000157350|ENST00000342907|ST3GAL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7908020019531	2	500.315503	998.616454	0.29899	0.00014959	-4.1093	-0.002056	-3.8103	-0.0019064	500.31376891695527	22.231	0.26488	22.131	21.994	22.259	-0.10034					17	9	2	0	0	0	0.34337	1	3099	3099		5.2307	2.3415	1	42035			20340	5298	11504	11505	25542	25542					0.11708995867752492
KVLFPLLTK	9	Unmodified	_KVLFPLLTK_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.8519897460938	2	529.852253	1057.68995	0.57064	0.00030235	-0.4625	-0.00024506	0.10813	5.7295E-05	529.8519881887405	52.612	1.0597	52.663	52.417	53.476	0.050571					102	38	5	0	0	0	0.032589	1	12435	12435		59.368	0.68956	1	5863000			20341	2153	11505	11506	25543	25543					0.16341544310193967
KVLHDKQRGP	10	Unmodified	_KVLHDKQRGP_					0	0	0		nc|ENSG00000164347|Q969S9-5|GFM2;nc|ENSG00000164347|Q969S9-4|GFM2;nc|ENSG00000164347|Q969S9-3|GFM2;ENSG00000164347|ENST00000296805|GFM2	nc|ENSG00000164347|Q969S9-5|GFM2	nc|ENSG00000164347|Q969S9-5|GFM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.34375	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.31	1	119.34	118.84	119.84	0.027756								0	0	0	0.38203	1	30865	30865		0.35063	0	1				20342	5838	11506	11507	25544	25544					0.09147016757128767
KVLHFFNVK	9	Unmodified	_KVLHFFNVK_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.742431640625	2	566.337301	1130.66005	0.35996	0.00020386	-0.18889	-0.00010698	0.17107	9.6882E-05	566.3368940392479	36.462	0.39786	36.462	36.358	36.756	0					18	13	2	0	0	0	0.25988	1	7468	7468		3.9444	0	1	189080			20343	4929	11507	11508	25545	25545					0.09994605364886411
KVLHFFNVK	9	Unmodified	_KVLHFFNVK_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.7425537109375	2	566.337301	1130.66005	0.52875	0.00029945	-0.66631	-0.00037735	-0.13755	-7.7901E-05	566.3369270584437	36.299	0.31332	36.381	36.308	36.621	0.082355					19	10	2	0	0	0	0.25323	1	7406	7406		10.074	3.3508	1	207550			20344	4929	11507	11508	25546	25546					0.09994605364886411
KVLHFFNVK	9	Unmodified	_KVLHFFNVK_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7428588867188	2	566.337301	1130.66005	0.67218	0.00038068	-0.89939	-0.00050936	-0.2272	-0.00012867	566.3365330686636	36.321	0.43463	36.408	36.272	36.707	0.08625					20	14	2	0	0	0	0.25323	1	7406	7406		10.074	2.465	1	179550			20345	4929	11507	11508	25547	25547					0.09994605364886411
KVLHFYNVK	9	Unmodified	_KVLHFYNVK_					0	0	0		ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	ENSG00000176986|ENST00000345254|SEC24C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.304443359375	2	574.334759	1146.65496	-0.0126	-7.2368E-06	-0.08714	-5.0047E-05	-0.09974	-5.7284E-05	574.3347642593973	28.581	0.39537	28.582	28.38	28.776	0.0004673					22	13	2	0	0	0	0.25988	1	5053	5053		3.9444	1.4459	1	87303			20346	6955	11508	11509	25548	25548					0.08750301502254842
KVLIEFYHL	9	Unmodified	_KVLIEFYHL_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant;VPS13A|p.L1845Vfs*28|1|0.03|ENSG00000197969|chr9:77321285-77321286|-/GTACATT|frameshift_variant;VPS13A|p.Y1116Ifs*27|1|0.25|ENSG00000197969|chr9:77293345-77293345|T/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8535766601562	2	581.336967	1160.65938	-0.039275	-2.2832E-05	-0.25644	-0.00014908	-0.29572	-0.00017191	581.3368997503204	13.854	0.3368	13.854	13.687	14.024	0					19	11	2	0	0	0	0.26168	1	501	501		1.8442	0	1	24870			20347	8020	11509	11510	25549	25549					0.0854776592516373
KVLIEFYHL	9	Unmodified	_KVLIEFYHL_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant;VPS13A|p.L1845Vfs*28|1|0.03|ENSG00000197969|chr9:77321285-77321286|-/GTACATT|frameshift_variant;VPS13A|p.Y1116Ifs*27|1|0.25|ENSG00000197969|chr9:77293345-77293345|T/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	581.336967	1160.65938	-0.055621	-3.2334E-05	-0.089229	-5.1872E-05	-0.14485	-8.4207E-05	581.3370721577368	13.947	0.29122	13.881	13.716	14.007	-0.066068	0.028601	-8.9354E-05	NaN	1.8442	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37806			20348	8020	11509	11510							0.0854776592516373
KVLNEKKLQ	9	Unmodified	_KVLNEKKLQ_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000492740.5_1_2:203130664-203139913:+|nuORF;ENST00000472050.5_1_2:203130664-203149064:+|nuORF;ENST00000488403.5_1_2:203130664-203149205:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.34521484375	2	550.345323	1098.67609	-0.021527	-1.1847E-05	-0.021831	-1.2014E-05	-0.043358	-2.3862E-05	550.3451907057162	12.28	0.26202	12.212	12.051	12.313	-0.06806					22	10	3	0	0	0	0.34809	1	83	83		1.6526	0	1	44858			20349	697	11510	11511	25550	25550					0.1307026681113257
KVLNTVVNK	9	Unmodified	_KVLNTVVNK_					0	0	0		nc|ENSG00000092529|P20807-5|CAPN3;nc|ENSG00000092529|P20807-4|CAPN3;nc|ENSG00000092529|P20807-2|CAPN3;nc|ENSG00000092529|P20807-3|CAPN3;ENSG00000092529|ENST00000397163|CAPN3	nc|ENSG00000092529|P20807-5|CAPN3	nc|ENSG00000092529|P20807-5|CAPN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.8192138671875	2	507.818941	1013.62333	0.38408	0.00019504	-0.19731	-0.0001002	0.18677	9.4844E-05	507.8187639905887	20.51	0.48858	20.51	20.31	20.798	0					31	16	3	0	0	0	0.22935	2	2537	2537;2587		19.362	4.1135	1	129770			20350	1425	11511	11512	25551;25552	25551					0.1170630874833023
KVLNTVVNK	9	Unmodified	_KVLNTVVNK_					0	0	0		nc|ENSG00000092529|P20807-5|CAPN3;nc|ENSG00000092529|P20807-4|CAPN3;nc|ENSG00000092529|P20807-2|CAPN3;nc|ENSG00000092529|P20807-3|CAPN3;ENSG00000092529|ENST00000397163|CAPN3	nc|ENSG00000092529|P20807-5|CAPN3	nc|ENSG00000092529|P20807-5|CAPN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.8186340332031	2	507.818941	1013.62333	0.58049	0.00029478	-0.44542	-0.00022619	0.13507	6.8592E-05	507.8187054936437	20.763	0.51504	20.653	20.435	20.95	-0.11003					28	17	2	0	0	0	0.22101	1	2625	2625		20.581	9.0862	1	125630			20351	1425	11511	11512	25553	25553					0.1170630874833023
KVLNTVVNK	9	Unmodified	_KVLNTVVNK_					0	0	0		nc|ENSG00000092529|P20807-5|CAPN3;nc|ENSG00000092529|P20807-4|CAPN3;nc|ENSG00000092529|P20807-2|CAPN3;nc|ENSG00000092529|P20807-3|CAPN3;ENSG00000092529|ENST00000397163|CAPN3	nc|ENSG00000092529|P20807-5|CAPN3	nc|ENSG00000092529|P20807-5|CAPN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.8195495605469	2	507.818941	1013.62333	0.54526	0.00027689	-0.2133	-0.00010832	0.33196	0.00016857	507.8188198155406	20.629	0.49888	20.576	20.387	20.886	-0.05291					31	17	3	0	0	0	0.2869	1	2582	2582		10.8	2.0541	1	116430			20352	1425	11511	11512	25554	25554					0.1170630874833023
KVLNTVVNK	9	Unmodified	_KVLNTVVNK_					0	0	0		nc|ENSG00000092529|P20807-5|CAPN3;nc|ENSG00000092529|P20807-4|CAPN3;nc|ENSG00000092529|P20807-2|CAPN3;nc|ENSG00000092529|P20807-3|CAPN3;ENSG00000092529|ENST00000397163|CAPN3	nc|ENSG00000092529|P20807-5|CAPN3	nc|ENSG00000092529|P20807-5|CAPN3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.818941	1013.62333	0.54526	0.00027689	-0.2133	-0.00010832	0.33196	0.00016857	507.8188198155406	20.629	0.49888	20.576	20.387	20.886	-0.05291	-0.003651	5.8871E-05	NaN	20.581	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116430			20353	1425	11511	11512							0.1170630874833023
KVLPLLKIIKK	11	Unmodified	_KVLPLLKIIKK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.65087890625	3	431.651248	1291.93191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.422	1	40.422	39.922	40.922	0								0	0	0	0.06907	1	8619	8619		50.13	26.166	1				20354	5064;484;7523	11512	11513	25555	25555					0.29762574666347064
KVLPLLKIIKK	11	Unmodified	_KVLPLLKIIKK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.65087890625	3	431.651248	1291.93191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.194	1	40.287	39.787	40.787	0.09267								0	0	0	0.030819	1	8550	8550		62.78	38.816	1				20355	5064;484;7523	11512	11513	25556	25556					0.29762574666347064
KVLPLLKIIKK	11	Unmodified	_KVLPLLKIIKK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.65081787109375	3	431.651248	1291.93191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.267	1	40.366	39.866	40.866	0.099407								0	0	0	0.064127	1	8565	8565		51.765	21.334	1				20356	5064;484;7523	11512	11513	25557	25557					0.29762574666347064
KVLQFKNK	8	Unmodified	_KVLQFKNK_					0	0	0		nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40;ENSG00000103549|ENST00000324685|RNF40	nc|ENSG00000103549|O75150-3|RNF40	nc|ENSG00000103549|O75150-3|RNF40	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2928161621094	2	502.816202	1003.61785	0.19457	9.7833E-05	-0.34266	-0.0001723	-0.1481	-7.4465E-05	502.81598397765066	16.078	0.49011	16.016	15.808	16.298	-0.062532					33	16	3	0	0	0	0.34272	1	1232	1232		7.9102	0	1	100820			20357	1843	11513	11514	25558	25558					0.11618629956512905
KVLQGAKYIK	10	Unmodified	_KVLQGAKYIK_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8367309570312	2	574.363516	1146.71248	0.049872	2.8645E-05	0.11113	6.3827E-05	0.161	9.2472E-05	574.363562834725	31.307	0.30151	31.35	31.156	31.458	0.042366					16	10	2	0	0	0	0.31926	1	5796	5796		5.7319	0.83484	1	148170	+		20358	14279	11514	11515	25559	25559					0.1449914370782608
KVLQGAKYIK	10	Unmodified	_KVLQGAKYIK_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	574.363516	1146.71248	0.019516	1.1209E-05	0.61298	0.00035208	0.6325	0.00036328	574.3637106650215	31.336	0.3052	31.336	31.171	31.476	0	0.02026	0.00036514	NaN	5.7319	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142780	+		20359	14279	11514	11515							0.1449914370782608
KVLQGAKYIK	10	Unmodified	_KVLQGAKYIK_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	574.363516	1146.71248	0.18872	0.0001084	0.1028	5.9045E-05	0.29153	0.00016744	574.3633623481243	31.221	0.2688	31.262	31.15	31.419	0.040991	-0.053834	-0.00022092	NaN	5.7319	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111460	+		20360	14279	11514	11515							0.1449914370782608
KVLRWTRT	8	Unmodified	_KVLRWTRT_					0	0	0			REV__ENST00000585280.5_1_17:45995848-46018744:-|nuORF	REV__ENST00000585280.5_1_17:45995848-46018744:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.323974609375	2	530.324725	1058.6349	0.14873	7.8874E-05	-1.252	-0.00066394	-1.1032	-0.00058507	530.3240401559852	14.335	0.49229	14.269	14.124	14.616	-0.066068					56	17	4	0	0	0	0.4354	1	727	727		10.824	1.4408	1	230890	+		20361	22508	11515	11516	25560	25560					0.10792550562314318
KVLSAISKD	9	Unmodified	_KVLSAISKD_					0	0	0			REV__ENSG00000089902|ENST00000262241|RCOR1	REV__ENSG00000089902|ENST00000262241|RCOR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7897644042969	2	480.78985	959.565146	0.25422	0.00012223	-0.33122	-0.00015925	-0.077003	-3.7022E-05	480.7896867041017	16.609	0.5607	16.546	16.324	16.885	-0.062534					27	19	2	0	0	0	0.25527	1	1374	1374		8.7454	0	1	91578	+		20362	14033	11516	11517	25561	25561					0.08374627103034982
KVLSAISKD	9	Unmodified	_KVLSAISKD_					0	0	0			REV__ENSG00000089902|ENST00000262241|RCOR1	REV__ENSG00000089902|ENST00000262241|RCOR1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	480.78985	959.565146	0.04194	2.0164E-05	-0.00060159	-2.8924E-07	0.041338	1.9875E-05	480.7897945501044	16.659	0.55571	16.545	16.275	16.831	-0.11434	-0.0038538	0.000219	NaN	8.7454	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88718	+		20363	14033	11516	11517							0.08374627103034982
KVLSDDMKKL	10	Unmodified	_KVLSDDMKKL_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-4|IL32;ENST00000532086.1_1_16:3115767-3117689:+|nuORF;ENST00000532247.5_1_16:3115647-3117689:+|nuORF	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.8062133789062	2	588.836474	1175.65839	0.99823	0.00058779	-0.76075	-0.00044796	0.23748	0.00013983	588.8359209630169	50.41	0.77887	50.431	49.989	50.768	0.020691					47	28	2	0	0	0	0.29613	1	11720	11720		18.373	1.8072	1	812880			20364	400	11517	11518	25562	25562					0.0775918349395397
KVLSFVLKQ	9	Unmodified	_KVLSFVLKQ_					0	0	0			REV__ENST00000473515.5_1_6:108067761-108070999:-|nuORF	REV__ENST00000473515.5_1_6:108067761-108070999:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8063354492188	2	531.33951	1060.66447	0.37907	0.00020142	0.13127	6.9747E-05	0.51034	0.00027116	531.3396335077231	18.16	0.39995	18.16	17.991	18.391	0					22	13	2	0	0	0	0.24848	1	1872	1872		13.906	9.5768	1	35556	+		20365	16342	11518	11519	25563	25563					0.13656069787793967
KVLVAFLEKA	10	Unmodified	_KVLVAFLEKA_					0	0	0		ENSG00000147432|ENST00000289957|CHRNB3	ENSG00000147432|ENST00000289957|CHRNB3	ENSG00000147432|ENST00000289957|CHRNB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.260009765625	2	559.352617	1116.69068	0.42581	0.00023818	-0.24454	-0.00013678	0.18127	0.0001014	559.3524512436609	49.509	0.47135	49.509	49.292	49.763	0					22	16	2	0	0	0	0.31926	1	11470	11470		5.7319	0	1	162970			20366	4764	11519	11520	25564	25564					0.1370033895927918
KVMDLSIVRL	10	Oxidation (M)	_KVM(Oxidation (M))DLSIVRL_		KVM(1)DLSIVRL		KVM(110)DLSIVRL	0	0	1		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.3526000976562	2	595.352291	1188.69003	0.57491	0.00034227	-0.39563	-0.00023554	0.17927	0.00010673	595.3519997133277	49.528	0.73338	49.528	49.292	50.025	0					64	26	4	0	0	0	0.0016549	2	11408	11408;11456		112.04	71.802	1	1303400			20367	1079	11520	11521	25565;25566	25565		133			0.10323176247925403
KVMDLSIVRL	10	Oxidation (M)	_KVM(Oxidation (M))DLSIVRL_		KVM(1)DLSIVRL		KVM(100)DLSIVRL	0	0	1		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.3524780273438	2	595.352291	1188.69003	0.45275	0.00026955	-0.30748	-0.00018306	0.14527	8.6489E-05	595.3520634376737	49.558	0.58978	49.602	49.342	49.932	0.044891					58	21	4	0	0	0	0.0031317	2	11414	11414;11461		102.55	62.309	1	1636600			20368	1079	11520	11521	25567;25568	25567		133			0.10323176247925403
KVMDLSIVRL	10	Oxidation (M)	_KVM(Oxidation (M))DLSIVRL_		KVM(1)DLSIVRL		KVM(120)DLSIVRL	0	0	1		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.3522338867188	2	595.352291	1188.69003	0.32503	0.00019351	-0.17236	-0.00010261	0.15267	9.0893E-05	595.3521277555926	49.549	0.7051	49.581	49.295	50	0.032043					68	25	4	0	0	0	0.0011942	2	11400	11400;11452		118.21	77.97	1	1258000			20369	1079	11520	11521	25569;25570	25569		133			0.10323176247925403
KVMGFGLYL	9	Oxidation (M)	_KVM(Oxidation (M))GFGLYL_		KVM(1)GFGLYL		KVM(42)GFGLYL	0	0	1		ENSG00000273749|ENST00000617928|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2831420898438	2	522.283346	1042.55214	0.48222	0.00025186	-0.41197	-0.00021517	0.070248	3.6689E-05	522.2829186731008	62.743	0.81968	62.839	62.52	63.339	0.095722					65	29	4	0	0	0	0.10111	1	15465	15465		42.095	33.501	1	1196300			20370	8708;702	11521	11522	25571	25571		88			0.03256472719294834
KVMGFGLYL	9	Oxidation (M)	_KVM(Oxidation (M))GFGLYL_		KVM(1)GFGLYL		KVM(57)GFGLYL	0	0	1		ENSG00000273749|ENST00000617928|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1;ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2832641601562	2	522.283346	1042.55214	0.38203	0.00019953	-0.48107	-0.00025125	-0.099035	-5.1724E-05	522.2829403765535	62.827	0.78292	62.819	62.514	63.297	-0.0085526					73	28	4	0	0	0	0.037693	1	15496	15496		57.471	37.018	1	975930			20371	8708;702	11521	11522	25572	25572		88			0.03256472719294834
KVMGILINR	9	Oxidation (M)	_KVM(Oxidation (M))GILINR_		KVM(1)GILINR		KVM(54)GILINR	0	0	1		ENSG00000105063|ENST00000412770|PPP6R1;PPP6R1|p.H392Mfs*11|1|0.38|ENSG00000105063|chr19:55241065-55241068|ATGG/-|frameshift_variant	ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7930908203125	2	530.320794	1058.62703	0.58313	0.00030925	0.063082	3.3454E-05	0.64621	0.0003427	530.3207406017925	30.25	0.67504	30.25	29.999	30.674	0					44	23	3	0	0	0	0.10058	1	5504	5504		53.833	36.72	1	385150			20372	1945	11522	11523	25573	25573		238			0.10006655250549557
KVMGILINR	9	Oxidation (M)	_KVM(Oxidation (M))GILINR_		KVM(1)GILINR		KVM(52)GILINR	0	0	1		ENSG00000105063|ENST00000412770|PPP6R1;PPP6R1|p.H392Mfs*11|1|0.38|ENSG00000105063|chr19:55241065-55241068|ATGG/-|frameshift_variant	ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3211059570312	2	530.320794	1058.62703	0.17649	9.3598E-05	0.3602	0.00019102	0.5367	0.00028462	530.3210024673052	30.227	0.61768	30.254	30.052	30.669	0.027157					43	21	3	0	0	0	0.05341	1	5519	5519		51.63	18.844	1	341310			20373	1945	11522	11523	25574	25574		238			0.10006655250549557
KVNDDFYTK	9	Unmodified	_KVNDDFYTK_					0	0	0		nc|ENSG00000237515|B4DS77-2|SHISA9;ENSG00000237515|ENST00000558583|SHISA9	nc|ENSG00000237515|B4DS77-2|SHISA9	nc|ENSG00000237515|B4DS77-2|SHISA9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.2796020507812	2	565.279846	1128.54514	0.089699	5.0705E-05	-0.97816	-0.00055293	-0.88846	-0.00050223	565.2794240529228	23.505	0.66499	23.505	23.278	23.943	0					53	22	3	0	0	0	0.072885	2	3445	3445;3492		44.392	33.592	1	348360			20374	8506	11523	11524	25575;25576	25575					-0.013991686275858228
KVNDDFYTK	9	Unmodified	_KVNDDFYTK_					0	0	0		nc|ENSG00000237515|B4DS77-2|SHISA9;ENSG00000237515|ENST00000558583|SHISA9	nc|ENSG00000237515|B4DS77-2|SHISA9	nc|ENSG00000237515|B4DS77-2|SHISA9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.2797241210938	2	565.279846	1128.54514	0.32289	0.00018252	-1.1211	-0.00063376	-0.79824	-0.00045123	565.2793054540931	23.64	0.82671	23.602	23.339	24.166	-0.038927					58	28	3	0	0	0	0.062981	1	3482	3482		48.073	34.458	1	321740			20375	8506	11523	11524	25577	25577					-0.013991686275858228
KVNIIPLIAK	10	Unmodified	_KVNIIPLIAK_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000398921.6_1_7:45788229-45798731:-|nuORF;ENSG00000154997|ENST00000388975|SEPTIN14	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.8762817382812	2	554.876259	1107.73797	0.4533	0.00025153	0.028835	1.6E-05	0.48213	0.00026753	554.8760984925018	47.485	0.45015	47.533	47.295	47.745	0.04752					39	16	3	0	0	0	0.038178	1	10778	10778		61.602	0	1	728510			20376	3049	11524	11525	25578	25578					0.1884061823027423
KVNIIPLIAK	10	Unmodified	_KVNIIPLIAK_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000398921.6_1_7:45788229-45798731:-|nuORF;ENSG00000154997|ENST00000388975|SEPTIN14	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.8068237304688	2	554.876259	1107.73797	0.69845	0.00038755	-0.23286	-0.00012921	0.46559	0.00025835	554.8759797951093	47.493	0.47454	47.536	47.323	47.797	0.04332					38	17	3	0	0	0	0.27529	1	10728	10728		23.79	0	1	645950			20377	3049	11524	11525	25579	25579					0.1884061823027423
KVNIIPLIAK	10	Unmodified	_KVNIIPLIAK_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000398921.6_1_7:45788229-45798731:-|nuORF;ENSG00000154997|ENST00000388975|SEPTIN14	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	554.876259	1107.73797	0.58002	0.00032184	-0.3224	-0.00017889	0.25762	0.00014295	554.8759874755517	47.469	0.55369	47.469	47.244	47.797	0	-0.043465	-0.00012984	NaN	61.602	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	509440			20378	3049	11524	11525							0.1884061823027423
KVNLKTVH	8	Unmodified	_KVNLKTVH_					0	0	0		ENST00000559471.5_1_15:49282358-49282517:-|nuORF	ENST00000559471.5_1_15:49282358-49282517:-|nuORF	ENST00000559471.5_1_15:49282358-49282517:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.76898193359375	2	469.792727	937.5709	-0.11776	-5.5324E-05	-1.0426	-0.00048979	-1.1603	-0.00054511	469.7918631467651	14.912	0.27654	14.803	14.706	14.982	-0.10981					15	9	2	0	0	0	0.34378	1	859	859		3.9444	0	1	56916			20379	11885	11525	11526	25580	25580					0.09961770405357129
KVNLKTVH	8	Unmodified	_KVNLKTVH_					0	0	0		ENST00000559471.5_1_15:49282358-49282517:-|nuORF	ENST00000559471.5_1_15:49282358-49282517:-|nuORF	ENST00000559471.5_1_15:49282358-49282517:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7688903808594	2	469.792727	937.5709	-0.088379	-4.152E-05	-1.2735	-0.0005983	-1.3619	-0.00063982	469.7916949158356	14.993	0.22335	14.928	14.79	15.013	-0.064414					13	7	2	0	0	0	0.34294	1	868	868		7.2892	0	1	60822			20380	11885	11525	11526	25581	25581					0.09961770405357129
KVNLYHAKK	9	Unmodified	_KVNLYHAKK_					0	0	0		nc|ENSG00000132872|Q9H2B2-2|SYT4;ENSG00000132872|ENST00000255224|SYT4	nc|ENSG00000132872|Q9H2B2-2|SYT4	nc|ENSG00000132872|Q9H2B2-2|SYT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.3345336914062	2	550.832383	1099.65021	0.098289	5.4141E-05	0.1424	7.8441E-05	0.24069	0.00013258	550.8325529723265	13.18	0.87621	13.08	12.814	13.69	-0.099291					79	30	5	0	0	0	0.25989	1	321	321		14.838	1.9657	1	2401900			20381	3671	11526	11527	25582	25582					0.10437417359503343
KVPDNKNVL	9	Unmodified	_KVPDNKNVL_					0	0	0		nc|nan|Q6P1W5-2|C1orf94;ENSG00000142698|ENST00000488417|C1orf94	nc|nan|Q6P1W5-2|C1orf94	nc|nan|Q6P1W5-2|C1orf94	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7899780273438	2	513.800749	1025.58694	-0.13763	-7.0715E-05	-1.7369	-0.00089241	-1.8745	-0.00096313	513.7997026817171	14.111	0.26285	14.045	13.889	14.152	-0.066068					14	8	2	0	0	0	0.33276	1	644	644		3.9444	0	1	102390			20382	4461	11527	11528	25583	25583					0.07517431851601941
KVPDNKNVL	9	Unmodified	_KVPDNKNVL_					0	0	0		nc|nan|Q6P1W5-2|C1orf94;ENSG00000142698|ENST00000488417|C1orf94	nc|nan|Q6P1W5-2|C1orf94	nc|nan|Q6P1W5-2|C1orf94	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	513.800749	1025.58694	-0.13763	-7.0715E-05	-1.7369	-0.00089241	-1.8745	-0.00096313	513.7997026817171	14.111	0.26285	14.045	13.889	14.152	-0.066068	0.0038459	-6.1653E-05	NaN	3.9444	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102390			20383	4461	11527	11528							0.07517431851601941
KVPDQKGTPK	10	Unmodified	_KVPDQKGTPK_					0	0	0		ENSG00000177570|ENST00000314727|SAMD12	ENSG00000177570|ENST00000314727|SAMD12	ENSG00000177570|ENST00000314727|SAMD12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3191528320312	2	549.319306	1096.62406	0.048783	2.6797E-05	-0.66127	-0.00036325	-0.61249	-0.00033645	549.319120407162	12.317	0.30694	12.317	12.219	12.526	0					21	9	3	0	0	0	0.37751	1	93	93		7.609	1.4032	1	83966			20384	6999	11528	11529	25584	25584					0.0796110339738334
KVPDQKGTPK	10	Unmodified	_KVPDQKGTPK_					0	0	0		ENSG00000177570|ENST00000314727|SAMD12	ENSG00000177570|ENST00000314727|SAMD12	ENSG00000177570|ENST00000314727|SAMD12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3193359375	2	549.319306	1096.62406	0.015389	8.4537E-06	-0.19943	-0.00010955	-0.18404	-0.0001011	549.3193318086242	12.335	0.35219	12.267	12.167	12.519	-0.06806					24	11	3	0	0	0	0.36368	1	103	103		10.151	3.9448	1	64963			20385	6999	11528	11529	25585	25585					0.0796110339738334
KVPFAHKPL	9	Unmodified	_KVPFAHKPL_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.8006591796875	2	518.818744	1035.62294	0.11476	5.9541E-05	-0.41997	-0.00021789	-0.30521	-0.00015835	518.8184594570635	46.396	0.59192	46.396	46.111	46.703	0					52	21	3	0	0	0	0.25706	1	10382	10382		6.7232	4.1457	1	1089300			20386	5325	11529	11530	25586	25586					0.10654933819137113
KVPFAHKPL	9	Unmodified	_KVPFAHKPL_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	518.818744	1035.62294	0.19496	0.00010115	-0.67301	-0.00034917	-0.47804	-0.00024802	518.8183000872144	46.21	0.54162	46.27	46.043	46.585	0.059834	-0.061708	-0.00014716	NaN	6.7232	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1280600			20387	5325	11529	11530							0.10654933819137113
KVPFAHKPL	9	Unmodified	_KVPFAHKPL_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	518.818744	1035.62294	0.21706	0.00011261	-0.53489	-0.00027751	-0.31783	-0.0001649	518.8183563146605	46.264	0.6492	46.329	46.07	46.719	0.065048	-0.0023199	-3.8494E-06	NaN	6.7232	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	911070			20388	5325	11529	11530							0.10654933819137113
KVPLNPPGK	9	Unmodified	_KVPLNPPGK_					0	0	0		ENST00000462656.5_1_10:134165150-134179835:+|nuORF;ENST00000472556.5_1_10:134165150-134180418:+|nuORF;ENST00000475747.5_1_10:134165051-134188743:+|nuORF;nc|ENSG00000148814|Q9C0I9-2|LRRC27;ENSG00000148814|ENST00000368614|LRRC27	ENST00000462656.5_1_10:134165150-134179835:+|nuORF	ENST00000462656.5_1_10:134165150-134179835:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.7326354980469	2	475.295102	948.575651	0.038703	1.8395E-05	-2.2569	-0.0010727	-2.2182	-0.0010543	475.2951039998009	18.075	0.70358	18.075	17.628	18.332	0					38	23	2	0	0	0	0.25526	1	1845	1845		7.9102	0.62092	1	43804			20389	4829	11530	11531	25587	25587					0.09930654548145412
KVQAADNALR	10	Unmodified	_KVQAADNALR_					0	0	0			REV__nc|ENSG00000085563|P08183-2|ABCB1	REV__nc|ENSG00000085563|P08183-2|ABCB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3075561523438	2	543.306729	1084.59891	0.14495	7.8751E-05	-1.3517	-0.0007344	-1.2068	-0.00065565	543.3051829999071	13.674	0.47494	13.674	13.457	13.932	0					35	16	3	0	0	0	0.3001	1	526	526		20.415	1.0526	1	219840	+		20390	13965	11531	11532	25588	25588					0.05999048594776468
KVQDLERAALP	11	Unmodified	_KVQDLERAALP_					0	0	0		nc|ENSG00000159640|P12821-2|ACE;ENSG00000159640|ENST00000290866|ACE;ENST00000578839.5_1_17:61562212-61574724:+|nuORF;nc|ENSG00000159640|P12821-4|ACE;nc|ENSG00000159640|P12821-3|ACE	nc|ENSG00000159640|P12821-2|ACE	nc|ENSG00000159640|P12821-2|ACE	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3388671875	2	620.356419	1238.69829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.71	1	101.74	101.24	102.24	0.027206								0	0	0	0.36137	1	27120	27120		5.7319	2.7366	1				20391	5418	11532	11533	25589	25589					0.08848446488900663
KVQDVKKTIQK	11	Unmodified	_KVQDVKKTIQK_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.56402587890625	3	438.941638	1313.80309	-0.24953	-0.00010953	-0.14466	-6.3496E-05	-0.39418	-0.00017302	438.9413919756715	14.04	0.46292	14.04	13.872	14.335	0					44	15	4	0	0	0	0.33238	1	633	633		2.9264	2.5597	1	356400			20392	3726	11533	11534	25590	25590					0.15873567965468283
KVQDVKKTIQK	11	Unmodified	_KVQDVKKTIQK_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.5639953613281	3	438.941638	1313.80309	-0.27771	-0.0001219	-0.2024	-8.884E-05	-0.48011	-0.00021074	438.9414188062644	14.144	0.57789	14.04	13.845	14.422	-0.10466					38	19	3	0	0	0	0.33251	1	621	621		4.6037	0.75784	1	405980			20393	3726	11533	11534	25591	25591					0.15873567965468283
KVQDVKKTIQK	11	Unmodified	_KVQDVKKTIQK_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000508667.5_1_5:145522961-145531505:-|nuORF	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.5640563964844	3	438.941638	1313.80309	-0.26046	-0.00011433	-0.14175	-6.2221E-05	-0.40221	-0.00017655	439.2760270921647	14.119	0.51117	14.053	13.889	14.4	-0.066068					38	17	3	0	0	0	0.33158	1	619	619		7.0341	5.1277	1	388010			20394	3726	11533	11534	25592	25592					0.15873567965468283
KVQEDEFRYRM	11	Unmodified	_KVQEDEFRYRM_					0	0	0		ENSG00000134247|ENST00000393203|PTGFRN;ENST00000496699.1_1_1:117509714-117517097:+|nuORF	ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8236999511719	3	500.913642	1499.7191	0.054514	2.7307E-05	-0.74862	-0.00037499	-0.6941	-0.00034769	500.91316580549716	28.282	0.4541	28.282	28.094	28.548	0					28	15	2	0	0	0	0.33316	1	4921	4921		2.084	0.62885	1	261660			20395	3764	11534	11535	25593	25593					-0.010773311937555263
KVQEDEFRYRM	11	Unmodified	_KVQEDEFRYRM_					0	0	0		ENSG00000134247|ENST00000393203|PTGFRN;ENST00000496699.1_1_1:117509714-117517097:+|nuORF	ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8238220214844	3	500.913642	1499.7191	0.029115	1.4584E-05	-1.0276	-0.00051475	-0.99851	-0.00050017	500.9131826170036	28.343	0.69359	28.343	27.992	28.686	0.0004673					37	24	2	0	0	0	0.33303	1	4938	4938		2.4348	0.97967	1	188680			20396	3764	11534	11535	25594	25594					-0.010773311937555263
KVQEMNYIQK	10	Oxidation (M)	_KVQEM(Oxidation (M))NYIQK_		KVQEM(1)NYIQK		KVQEM(46)NYIQK	0	0	1		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	648.8341064453125	2	648.834462	1295.65437	0.41807	0.00027126	0.42103	0.00027318	0.83909	0.00054443	648.8346141468123	20.02	0.43924	20.02	19.796	20.235	0					34	16	3	0	0	0	0.10933	1	2388	2388		46.022	25.608	1	230220			20397	882	11535	11536	25595	25595		113			0.01837094000234174
KVQEMNYIQK	10	Oxidation (M)	_KVQEM(Oxidation (M))NYIQK_		KVQEM(1)NYIQK		KVQEM(100)NYIQK	0	0	1		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.8925476074219	3	432.892067	1295.65437	-0.12986	-5.6216E-05	1.036	0.00044846	0.90611	0.00039225	432.8925671726588	20.054	0.93862	20.054	19.739	20.678	0					76	34	3	0	0	0	0.0031464	1	2415	2415		102.46	60.395	1	586610			20398	882	11535	11536	25596	25596		113			0.01837094000234174
KVQEMNYIQK	10	Oxidation (M)	_KVQEM(Oxidation (M))NYIQK_		KVQEM(1)NYIQK		KVQEM(41)NYIQK	0	0	1		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	648.834716796875	2	648.834462	1295.65437	0.49966	0.0003242	0.032403	2.1024E-05	0.53206	0.00034522	648.8344941149043	20.296	0.47528	20.186	19.875	20.35	-0.11003					37	17	3	0	0	0	0.13386	1	2497	2497		40.725	22.579	1	137900			20399	882	11535	11536	25597	25597		113			0.01837094000234174
KVQEMNYIQK	10	Oxidation (M)	_KVQEM(Oxidation (M))NYIQK_		KVQEM(1)NYIQK		KVQEM(53)NYIQK	0	0	1		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.336669921875	2	648.834462	1295.65437	0.5553	0.0003603	0.25801	0.0001674	0.81331	0.0005277	648.8345218694285	20.143	0.41053	20.087	19.816	20.227	-0.055693					33	14	3	0	0	0	0.076018	1	2433	2433		53.317	33.955	1	164740			20400	882	11535	11536	25598	25598		113			0.01837094000234174
KVQGLIEHY	9	Unmodified	_KVQGLIEHY_					0	0	0			REV__ENSG00000244607|ENST00000310232|CCDC13	REV__ENSG00000244607|ENST00000310232|CCDC13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3021850585938	2	543.800749	1085.58694	0.14727	8.0087E-05	2.9113	0.0015832	3.0586	0.0016632	543.8023829732794	13.814	0.18863	13.814	13.714	13.902	0					11	6	2	0	0	0	0.25066	1	539	539		11.64	0.81637	1	60068	+		20401	19204	11536	11537	25599	25599					0.04757431851612637
KVQGSPLKK	9	Unmodified	_KVQGSPLKK_					0	0	0		nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.8135986328125	2	492.813659	983.612765	0.029691	1.4632E-05	-0.29513	-0.00014544	-0.26543	-0.00013081	492.81351187250215	12.918	0.33525	12.918	12.783	13.118	0					24	11	3	0	0	0	0.30459	1	280	280		8.1555	0.24537	1	88454			20402	3535	11537	11538	25600	25600					0.12030326093884014
KVQGSPLKK	9	Unmodified	_KVQGSPLKK_					0	0	0		nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8135681152344	2	492.813659	983.612765	0.049778	2.4531E-05	-0.22247	-0.00010963	-0.17269	-8.5103E-05	492.8135821672681	12.986	0.42381	12.886	12.673	13.097	-0.099291					28	14	3	0	0	0	0.22215	1	303	303		20.415	4.5674	1	90168			20403	3535	11537	11538	25601	25601					0.12030326093884014
KVQGSPLKK	9	Unmodified	_KVQGSPLKK_					0	0	0		nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	nc|ENSG00000131016|Q02952-3|AKAP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8135070800781	2	492.813659	983.612765	-0.070455	-3.4721E-05	-0.22498	-0.00011087	-0.29544	-0.0001456	492.8136028997655	12.987	0.33928	12.92	12.734	13.073	-0.067496					23	11	3	0	0	0	0.23612	1	295	295		18.373	3.5348	1	105770			20404	3535	11537	11538	25602	25602					0.12030326093884014
KVQITDKY	8	Unmodified	_KVQITDKY_					0	0	0			REV__ENSG00000183742|ENST00000400331|MACC1	REV__ENSG00000183742|ENST00000400331|MACC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.78216552734375	2	497.782025	993.549496	0.33932	0.00016891	-0.6687	-0.00033287	-0.32938	-0.00016396	497.78182092275233	19.527	0.46655	19.412	19.233	19.7	-0.11592					26	15	2	0	0	0	0.45431	1	2296	2296		4.3292	0	1	64566	+		20405	18280	11538	11539	25603	25603					0.05246340585983944
KVQLYNQAE	9	Unmodified	_KVQLYNQAE_					0	0	0			REV__ENSG00000203740|ENST00000439373|NTMT2	REV__ENSG00000203740|ENST00000439373|NTMT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.274658203125	2	546.787838	1091.56112	0.67481	0.00036898	-2.6314	-0.0014388	-1.9566	-0.0010698	546.7879974640484	39.034	0.27323	39.134	39.046	39.319	0.099403					13	9	2	0	0	0	0.23767	1	8213	8213		18.146	2.2992	1	156930	+		20406	18906	11539	11540	25604	25604					0.01900537609321873
KVQLYNQAE	9	Unmodified	_KVQLYNQAE_					0	0	0			REV__ENSG00000203740|ENST00000439373|NTMT2	REV__ENSG00000203740|ENST00000439373|NTMT2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	546.787838	1091.56112	0.67481	0.00036898	-2.6314	-0.0014388	-1.9566	-0.0010698	546.7879974640484	39.034	0.27323	39.134	39.046	39.319	0.099403	-0.049714	0.0011563	NaN	18.146	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156930	+		20407	18906	11539	11540							0.01900537609321873
KVQPPGPVK	9	Unmodified	_KVQPPGPVK_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.73284912109375	2	475.295102	948.575651	0.064108	3.047E-05	-2.7966	-0.0013292	-2.7325	-0.0012987	475.2952633082487	18.091	0.8879	17.974	17.694	18.582	-0.11739					52	30	3	0	0	0	0.25622	1	1846	1846		7.2892	0	1	47603			20408	485	11540	11541	25605	25605					0.09930654548134044
KVQPPGPVK	9	Unmodified	_KVQPPGPVK_					0	0	0		ENST00000480209.1_1_7:44524201-44524862:-|nuORF;ENSG00000015676|ENST00000355451|NUDCD3	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	ENST00000480209.1_1_7:44524201-44524862:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7328186035156	2	475.295102	948.575651	5.0409E-05	2.3959E-08	-2.5196	-0.0011975	-2.5195	-0.0011975	475.29509665964673	18.188	1.0007	18.13	17.707	18.707	-0.058172					53	35	2	0	0	0	0.25202	1	1850	1850		10.824	2.2306	1	57814			20409	485	11540	11541	25606	25606					0.09930654548134044
KVQPSDQVGK	10	Unmodified	_KVQPSDQVGK_					0	0	0		nc|ENSG00000160200|P35520-2|CBS;ENSG00000160200|ENST00000398165|CBS;ENST00000462349.5_1_21:44473992-44479496:-|nuORF	nc|ENSG00000160200|P35520-2|CBS	nc|ENSG00000160200|P35520-2|CBS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3065185546875	2	543.301113	1084.58767	0.18127	9.8486E-05	-0.10341	-5.6182E-05	0.077865	4.2304E-05	543.3006025496348	13.906	0.30984	13.801	13.713	14.023	-0.10466					20	10	3	0	0	0	0.08437	2	564	564;570		51.488	17.989	1	142900			20410	5443	11541	11542	25607;25608	25607					0.04876226500641678
KVQPSDQVGK	10	Unmodified	_KVQPSDQVGK_					0	0	0		nc|ENSG00000160200|P35520-2|CBS;ENSG00000160200|ENST00000398165|CBS;ENST00000462349.5_1_21:44473992-44479496:-|nuORF	nc|ENSG00000160200|P35520-2|CBS	nc|ENSG00000160200|P35520-2|CBS	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.30615234375	2	543.301113	1084.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.903	1	13.837	13.337	14.337	-0.066068								0	0	0	0.084657	1	563	563		57.108	29.479	1				20411	5443	11541	11542	25609	25609					0.04876226500641678
KVQQQADRL	9	Unmodified	_KVQQQADRL_					0	0	0			REV__ENSG00000237649|ENST00000428849|KIFC1	REV__ENSG00000237649|ENST00000428849|KIFC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3021850585938	2	543.306729	1084.59891	0.14495	7.8751E-05	-1.3517	-0.0007344	-1.2068	-0.00065565	543.3051829999071	13.674	0.47494	13.674	13.457	13.932	0					35	16	3	0	0	0	0.12642	2	539	539;558		34.402	3.7652	1	219840	+		20412	19157	11542	11543	25610;25611	25610					0.059990485947992056
KVQQQADRL	9	Unmodified	_KVQQQADRL_					0	0	0			REV__ENSG00000237649|ENST00000428849|KIFC1	REV__ENSG00000237649|ENST00000428849|KIFC1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	543.306729	1084.59891	0.14495	7.8751E-05	-1.3517	-0.0007344	-1.2068	-0.00065565	543.3051829999071	13.674	0.47494	13.674	13.457	13.932	0	-0.023778	-0.0016962	NaN	34.402	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219840	+		20413	19157	11542	11543							0.059990485947992056
KVQQQADRL	9	Unmodified	_KVQQQADRL_					0	0	0			REV__ENSG00000237649|ENST00000428849|KIFC1	REV__ENSG00000237649|ENST00000428849|KIFC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	543.306729	1084.59891	0.17946	9.75E-05	0.35929	0.0001952	0.53874	0.0002927	543.3067571786461	13.784	0.30275	13.679	13.46	13.763	-0.10466	-0.018182	0.000163	NaN	34.402	28	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182700	+		20414	19157	11542	11543							0.059990485947992056
KVQQRQAQQI	10	Unmodified	_KVQQRQAQQI_					0	0	0			REV__nc|ENSG00000187098|O75030-10|MITF	REV__nc|ENSG00000187098|O75030-10|MITF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5706787109375	3	409.570316	1225.68912	-0.12862	-5.2679E-05	0.33297	0.00013638	0.20435	8.3697E-05	409.57039785247366	25.777	0.82274	25.754	25.444	26.266	-0.022236					71	29	4	0	0	0	0.38515	1	4225	4225		3.3196	0.24738	1	860910	+		20415	18489	11543	11544	25612	25612					0.08530097923221547
KVQSKVNLK	9	Unmodified	_KVQSKVNLK_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3322143554688	2	522.332216	1042.64988	0.13797	7.2068E-05	-0.31391	-0.00016396	-0.17593	-9.1895E-05	522.332163409638	13.856	0.34132	13.856	13.714	14.055	0					29	11	4	0	0	0	0.0066776	1	543	543		84.522	40.75	1	471560			20416	276	11544	11545	25613	25613					0.1302599763962462
KVQSKVNLK	9	Unmodified	_KVQSKVNLK_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.3322143554688	2	522.332216	1042.64988	0.039831	2.0805E-05	-0.094274	-4.9242E-05	-0.054443	-2.8438E-05	522.332154612227	13.909	0.39392	13.805	13.685	14.079	-0.10466					33	13	4	0	0	0	0.0048951	1	565	565		87.258	27.184	1	410690			20417	276	11544	11545	25614	25614					0.1302599763962462
KVQSKVNLK	9	Unmodified	_KVQSKVNLK_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3321533203125	2	522.332216	1042.64988	0.06789	3.5461E-05	-0.14593	-7.6222E-05	-0.078036	-4.0761E-05	522.3321727209707	13.907	0.46422	13.841	13.687	14.152	-0.066068					27	15	3	0	0	0	0.0023309	1	566	566		107.56	47.489	1	455270			20418	276	11544	11545	25615	25615					0.1302599763962462
KVQTAVTMK	9	Oxidation (M)	_KVQTAVTM(Oxidation (M))K_		KVQTAVTM(1)K		KVQTAVTM(95)K	0	0	1		ENST00000550872.1_1_16:89715668-89724092:-|nuORF;ENSG00000131165|ENST00000397901|CHMP1A	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.28887939453125	2	511.289159	1020.56377	-0.013504	-6.9043E-06	-0.40243	-0.00020576	-0.41593	-0.00021266	511.28905823706265	13.38	0.62187	13.38	13.2	13.822	0					59	21	5	0	0	0	0.003929	1	400	400		94.909	34.835	1	865050			20419	3548	11545	11546	25616	25616		450			0.054306697426454775
KVQTAVTMK	9	Oxidation (M)	_KVQTAVTM(Oxidation (M))K_		KVQTAVTM(1)K		KVQTAVTM(86)K	0	0	1		ENST00000550872.1_1_16:89715668-89724092:-|nuORF;ENSG00000131165|ENST00000397901|CHMP1A	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.28887939453125	2	511.289159	1020.56377	-0.091231	-4.6645E-05	-0.30256	-0.00015469	-0.39379	-0.00020134	511.2890588946162	13.421	0.60783	13.322	13.16	13.768	-0.099291					61	21	4	0	0	0	0.0058682	1	423	423		85.764	25.691	1	896200			20420	3548	11545	11546	25617	25617		450			0.054306697426454775
KVQTAVTMK	9	Oxidation (M)	_KVQTAVTM(Oxidation (M))K_		KVQTAVTM(1)K		KVQTAVTM(110)K	0	0	1		ENST00000550872.1_1_16:89715668-89724092:-|nuORF;ENSG00000131165|ENST00000397901|CHMP1A	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	ENST00000550872.1_1_16:89715668-89724092:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2889099121094	2	511.289159	1020.56377	-0.14494	-7.4104E-05	-0.11416	-5.837E-05	-0.2591	-0.00013247	511.2891237351688	13.445	0.61214	13.377	13.189	13.801	-0.067496					54	21	3	0	0	0	0.0022427	1	416	416		108.26	39.157	1	894040			20421	3548	11545	11546	25618	25618		450			0.054306697426454775
KVREMRNKEWK	11	Unmodified	_KVREMRNKEWK_					0	0	0			REV__ENST00000497498.1_1_7:26242571-26246069:+|nuORF	REV__ENST00000497498.1_1_7:26242571-26246069:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.28155517578125	3	501.945277	1502.814	0.67519	0.00033891	0.92269	0.00046314	1.5979	0.00080205	502.280527337455	37.276	2.2851	37.276	36.673	38.958	0					266	81	4	0	0	0	0.44088	1	7726	7726		5.8681	1.462	1	4444800	+		20422	20087	11546	11547	25619	25619					0.0827064706809324
KVRFRYKRL	9	Unmodified	_KVRFRYKRL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.5748596191406	3	422.603291	1264.78804	-0.25254	-0.00010672	-1.008	-0.000426	-1.2606	-0.00053273	422.60274409876746	19.336	0.53957	19.336	19.034	19.574	0					39	18	3	0	0	0	0.25949	1	2128	2128		4.897	1.0511	1	46183	+		20423	16705;23038	11547	11548	25620	25620					0.16624165678786085
KVRGKKSL	8	Unmodified	_KVRGKKSL_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2991027832031	2	458.308544	914.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.543	1	97.543	97.043	98.043	0								0	0	0	0.37664	1	26089	26089		2.5775	0	1		+		20424	16784	11548	11549	25621	25621					0.1418176315931987
KVRIIPLQLQR	11	Unmodified	_KVRIIPLQLQR_					0	0	0		ENST00000484528.1_1_2:234465455-234475343:-|nuORF;ENST00000427947.7_1_2:234462980-234475343:-|nuORF;nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40	ENST00000484528.1_1_2:234465455-234475343:-|nuORF	ENST00000484528.1_1_2:234465455-234475343:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2920227050781	3	455.301389	1362.88234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.46	1	40.559	40.059	41.059	0.099407								0	0	0	0.38114	1	8624	8624		1.3296	0	1				20425	1270	11549	11550	25622	25622					0.2154125971026133
KVRILELLP	9	Unmodified	_KVRILELLP_					0	0	0		ENSG00000166147|ENST00000316623|FBN1;ENST00000559133.5_3_15:48703189-48720097:-|nuORF	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3736572265625	2	540.860609	1079.70667	0.68846	0.00037236	-0.12211	-6.6046E-05	0.56635	0.00030632	540.8603584366035	39.073	0.33844	39.172	38.953	39.292	0.099407					18	11	2	0	0	0	0.20881	1	8200	8200		16.149	0	1	259030			20426	6033	11550	11551	25623	25623					0.17000045196164137
KVRIMCNIES	10	Unmodified	_KVRIMCNIES_					0	0	0			REV__nc|ENSG00000105339|A2RUS2-2|DENND3	REV__nc|ENSG00000105339|A2RUS2-2|DENND3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.3309326171875	2	596.812476	1191.6104	0.29032	0.00017327	-0.91646	-0.00054695	-0.62614	-0.00037369	596.8118780626828	16.674	0.33376	16.56	16.362	16.695	-0.11434					18	11	2	0	0	0	0.32139	1	1368	1368		1.3295	0.13619	1	35373	+		20427	14450	11551	11552	25624	25624					0.022257863022787205
KVRLTFFTL	9	Unmodified	_KVRLTFFTL_					0	0	0		ENSG00000163568|ENST00000368130|AIM2	ENSG00000163568|ENST00000368130|AIM2	ENSG00000163568|ENST00000368130|AIM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8456420898438	2	562.844959	1123.67537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.92	1	112.92	112.42	113.42	0								0	0	0	0.2672	1	29337	29337		0.52476	0	1				20428	5703	11552	11553	25625	25625					0.11847472162094164
KVRPYSVYL	9	Unmodified	_KVRPYSVYL_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.7969970703125	2	562.826766	1123.63898	0.20685	0.00011642	-0.2267	-0.00012759	-0.019851	-1.1173E-05	562.8265681425266	39.365	0.55109	39.457	39.226	39.777	0.09267					43	19	3	0	0	0	0.24471	1	8345	8345		12.241	0.60036	1	343200			20429	4390	11553	11554	25626	25626					0.08210595265359188
KVRPYSVYL	9	Unmodified	_KVRPYSVYL_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.797119140625	2	562.826766	1123.63898	0.29659	0.00016693	0.16121	9.0734E-05	0.4578	0.00025766	562.8267720842339	39.327	0.52111	39.426	39.184	39.705	0.099407					42	18	3	0	0	0	0.24688	1	8337	8337		10.074	0	1	366010			20430	4390	11553	11554	25627	25627					0.08210595265359188
KVRPYSVYL	9	Unmodified	_KVRPYSVYL_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	562.826766	1123.63898	-0.063376	-3.567E-05	0.4936	0.00027781	0.43022	0.00024214	562.826867195177	39.447	0.61845	39.447	39.268	39.886	0	0.0033436	0.00036612	NaN	12.241	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279880			20431	4390	11553	11554							0.08210595265359188
KVRTVECV	8	Unmodified	_KVRTVECV_					0	0	0			REV__ENSG00000265972|ENST00000582401|TXNIP	REV__ENSG00000265972|ENST00000582401|TXNIP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2630920410156	2	467.262945	932.511337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114	1	113.98	113.48	114.48	-0.019096								0	0	0	0.37724	1	29617	29617		2.3027	0	1		+		20432	19298	11554	11555	25628	25628					0.042381313996770587
KVRYYRLK	8	Unmodified	_KVRYYRLK_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92;nc|ENSG00000114656|Q9ULG3-2|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.6445922851562	2	563.3482	1124.68185	-0.026579	-1.4973E-05	-2.6732	-0.0015059	-2.6998	-0.0015209	563.3464718922211	14.639	0.2871	14.639	14.531	14.819	0					14	9	2	0	0	0	0.34408	1	787	787		2.3027	0	1	54551			20433	2578	11555	11556	25629	25629					0.12449410113435988
KVSDILLRL	9	Unmodified	_KVSDILLRL_					0	0	0		ENSG00000198919|ENST00000361582|DZIP3;ENST00000495008.5_1_3:108355483-108366962:+|nuORF	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.82470703125	2	528.842416	1055.67028	0.58979	0.00031191	-0.21395	-0.00011314	0.37584	0.00019876	529.3438300867465	57.543	0.39357	57.543	57.299	57.693	0					22	13	2	0	0	0	0.23612	1	13870	13870		18.373	4.467	1	302640			20434	8160	11556	11557	25630	25630					0.14467168299461264
KVSDLTIPK	9	Unmodified	_KVSDLTIPK_					0	0	0		nc|ENSG00000090924|Q9H7P9-2|PLEKHG2;PLEKHG2|p.L964Rfs*79|1|0.24|ENSG00000090924|chr19:39424022-39424031|CCTCCAGGTG/-|frameshift_variant;PLEKHG2|p.L893Wfs*153|1|0.37|ENSG00000090924|chr19:39423806-39423806|C/-|frameshift_variant;nc|ENSG00000090924|Q9H7P9-3|PLEKHG2;ENSG00000090924|ENST00000425673|PLEKHG2	nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2852478027344	2	500.8055	999.596446	0.064937	3.2521E-05	-0.093378	-4.6764E-05	-0.02844	-1.4243E-05	500.8057830576198	31.327	0.30456	31.369	31.183	31.487	0.042366					16	10	2	0	0	0	0.25049	1	5860	5860		13.615	5.4593	1	101720			20435	1392	11557	11558	25631	25631					0.09663200137129024
KVSDLTIPK	9	Unmodified	_KVSDLTIPK_					0	0	0		nc|ENSG00000090924|Q9H7P9-2|PLEKHG2;PLEKHG2|p.L964Rfs*79|1|0.24|ENSG00000090924|chr19:39424022-39424031|CCTCCAGGTG/-|frameshift_variant;PLEKHG2|p.L893Wfs*153|1|0.37|ENSG00000090924|chr19:39423806-39423806|C/-|frameshift_variant;nc|ENSG00000090924|Q9H7P9-3|PLEKHG2;ENSG00000090924|ENST00000425673|PLEKHG2	nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	500.8055	999.596446	0.13815	6.9186E-05	0.058493	2.9294E-05	0.19664	9.848E-05	500.80562141641747	31.377	0.32462	31.377	31.202	31.526	0	0.019479	3.1312E-05	NaN	13.615	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91226			20436	1392	11557	11558							0.09663200137129024
KVSEEKKP	8	Unmodified	_KVSEEKKP_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.88336181640625	2	472.7742	943.533846	-0.089351	-4.2243E-05	0.72261	0.00034163	0.63326	0.00029939	472.77448255293115	14.612	0.3535	14.507	14.238	14.592	-0.10466					28	11	3	0	0	0	0.3418	1	739	739		8.1555	2.4237	1	127660	+		20437	15528	11558	11559	25632	25632					0.059820540689429436
KVSEFVASK	9	Unmodified	_KVSEFVASK_					0	0	0		nc|ENSG00000114626|Q969K4-4|ABTB1;ENSG00000114626|ENST00000232744|ABTB1;nc|ENSG00000114626|Q969K4-2|ABTB1;nc|ENSG00000114626|Q969K4-3|ABTB1	nc|ENSG00000114626|Q969K4-4|ABTB1	nc|ENSG00000114626|Q969K4-4|ABTB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7820129394531	2	497.782025	993.549496	0.20617	0.00010263	-0.54548	-0.00027153	-0.33931	-0.0001689	497.7818721258932	19.397	0.38911	19.397	19.211	19.6	0					27	13	3	0	0	0	0.32638	1	2234	2234		4.897	0.141	1	64198			20438	2576	11559	11560	25633	25633					0.05246340585995313
KVSEFVASK	9	Unmodified	_KVSEFVASK_					0	0	0		nc|ENSG00000114626|Q969K4-4|ABTB1;ENSG00000114626|ENST00000232744|ABTB1;nc|ENSG00000114626|Q969K4-2|ABTB1;nc|ENSG00000114626|Q969K4-3|ABTB1	nc|ENSG00000114626|Q969K4-4|ABTB1	nc|ENSG00000114626|Q969K4-4|ABTB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7808532714844	2	497.782025	993.549496	0.33932	0.00016891	-0.6687	-0.00033287	-0.32938	-0.00016396	497.78182092275233	19.527	0.46655	19.412	19.233	19.7	-0.11592					26	15	2	0	0	0	0.33911	1	2306	2306		2.9952	0.41776	1	64566			20439	2576	11559	11560	25634	25634					0.05246340585995313
KVSGVILSV	9	Unmodified	_KVSGVILSV_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.770263671875	2	451.289485	900.564418	0.42946	0.00019381	-0.42704	-0.00019272	0.0024257	1.0947E-06	451.28915782973246	48.233	0.5946	48.233	47.934	48.528	0					30	20	2	0	0	0	0.090256	1	10998	10998		41.956	7.5538	1	475060			20440	1822	11560	11561	25635	25635					0.11015832454006613
KVSGVILSV	9	Unmodified	_KVSGVILSV_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7702331542969	2	451.289485	900.564418	0.56754	0.00025612	-0.5054	-0.00022808	0.062137	2.8042E-05	451.2891442095183	48.158	0.55098	48.206	48.022	48.573	0.047523					40	20	3	0	0	0	0.14646	1	11021	11021		29.841	0	1	515370			20441	1822	11560	11561	25636	25636					0.11015832454006613
KVSHLLGIN	9	Unmodified	_KVSHLLGIN_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.79779052734375	2	490.798009	979.581465	0.018366	9.0139E-06	-0.48278	-0.00023695	-0.46442	-0.00022794	490.7978058355784	12.978	0.31077	12.878	12.7	13.011	-0.099291					16	10	3	0	0	0	0.24848	1	288	288		13.906	0.86358	1	64265			20442	1574	11561	11562	25637	25637					0.09085753059798662
KVSHLLGIN	9	Unmodified	_KVSHLLGIN_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	490.798009	979.581465	-0.010254	-5.0325E-06	-0.22508	-0.00011047	-0.23533	-0.0001155	490.79791206118165	12.907	0.39051	12.907	12.783	13.174	0	0.016906	0.00014813	NaN	13.906	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67874			20443	1574	11561	11562							0.09085753059798662
KVSKDKRAL	9	Unmodified	_KVSKDKRAL_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8116455078125	2	522.82984	1043.64513	0.0028561	1.4933E-06	-1.1026	-0.00057649	-1.0998	-0.000575	522.8289953295805	12.409	0.20795	12.341	12.226	12.434	-0.06806					12	6	3	0	0	0	0.3208	1	128	128		5.7319	2.1354	1	27653			20444	3462	11562	11563	25638	25638					0.1250511349687713
KVSKELVEK	9	Unmodified	_KVSKELVEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.32470703125	2	530.324057	1058.63356	0.18675	9.904E-05	-0.037453	-1.9862E-05	0.1493	7.9178E-05	530.3240799390984	14.269	0.4479	14.269	14.113	14.561	0					42	15	4	0	0	0	0.019599	1	660	660		64.692	30.29	1	277440			20445	3239	11563	11564	25639	25639					0.10658871682880999
KVSKELVEK	9	Unmodified	_KVSKELVEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3240356445312	2	530.324057	1058.63356	0.07304	3.8735E-05	0.21672	0.00011493	0.28976	0.00015366	530.3240928968603	14.334	0.43699	14.23	14.079	14.516	-0.10466					40	14	4	0	0	0	0.12765	1	684	684		34.222	13.807	1	196320			20446	3239	11563	11564	25640	25640					0.10658871682880999
KVSKELVEK	9	Unmodified	_KVSKELVEK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.32421875	2	530.324057	1058.63356	0.14873	7.8874E-05	0.0089793	4.762E-06	0.15771	8.3636E-05	530.3240401559852	14.335	0.49229	14.269	14.124	14.616	-0.066068					56	17	4	0	0	0	0.038672	2	698	681;698		57.108	22.706	1	230890			20447	3239	11563	11564	25641;25642	25642					0.10658871682880999
KVSLNIRSK	9	Unmodified	_KVSLNIRSK_					0	0	0		ENST00000443016.1_1_10:11607160-11607337:-|nuORF	ENST00000443016.1_1_10:11607160-11607337:-|nuORF	ENST00000443016.1_1_10:11607160-11607337:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8110961914062	2	522.82984	1043.64513	0.14531	7.5972E-05	-1.1932	-0.00062385	-1.0479	-0.00054788	522.8291035926154	12.388	0.14948	12.291	12.206	12.356	-0.096607					9	4	3	0	0	0	0.3208	1	114	114		5.7319	1.7875	1	26494			20448	10564	11564	11565	25643	25643					0.1250511349687713
KVSLNIRSK	9	Unmodified	_KVSLNIRSK_					0	0	0		ENST00000443016.1_1_10:11607160-11607337:-|nuORF	ENST00000443016.1_1_10:11607160-11607337:-|nuORF	ENST00000443016.1_1_10:11607160-11607337:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	522.82984	1043.64513	0.11381	5.9504E-05	-0.6137	-0.00032086	-0.49988	-0.00026135	522.8294277704199	12.381	0.15933	12.381	12.273	12.433	0	0.043053	0.00043198	NaN	5.7319	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31148			20449	10564	11564	11565							0.1250511349687713
KVSPGIHICFV	11	Unmodified	_KVSPGIHICFV_					0	0	0		ENST00000504986.5_1_4:41962243-41962348:+|nuORF	ENST00000504986.5_1_4:41962243-41962348:+|nuORF	ENST00000504986.5_1_4:41962243-41962348:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3341674804688	2	600.333901	1198.65325	0.70395	0.0004226	0.49544	0.00029743	1.1994	0.00072003	600.3340324848331	84.504	1.742	84.504	84.163	85.905	0					135	66	3	0	0	0	0.44828	1	22353	22353		4.897	1.3005	1	1184300			20450	11307	11565	11566	25644	25644					0.06186924421990625
KVSPGIHICFV	11	Unmodified	_KVSPGIHICFV_					0	0	0		ENST00000504986.5_1_4:41962243-41962348:+|nuORF	ENST00000504986.5_1_4:41962243-41962348:+|nuORF	ENST00000504986.5_1_4:41962243-41962348:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.334228515625	2	600.333901	1198.65325	0.44733	0.00026855	0.58998	0.00035419	1.0373	0.00062273	600.3342186629694	82.167	1.7056	82.236	81.53	83.235	0.068985					121	70	2	0	0	0	0.44828	2	21413	21413;21502		4.897	1.3005	1	335590			20451	11307	11565	11566	25645;25646	25645					0.06186924421990625
KVSRLPSPP	9	Unmodified	_KVSRLPSPP_					0	0	0			REV__ENST00000566894.1_1_15:75197493-75197640:-|nuORF	REV__ENST00000566894.1_1_15:75197493-75197640:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7977600097656	2	490.798009	979.581465	-0.010254	-5.0325E-06	-0.22508	-0.00011047	-0.23533	-0.0001155	490.79791206118165	12.907	0.39051	12.907	12.783	13.174	0					19	13	2	0	0	0	0.26612	1	271	271		13.906	1.6654	1	67874	+		20452	22373	11566	11567	25647	25647					0.09085753059787294
KVSVHRHR	8	Unmodified	_KVSVHRHR_					0	0	0		ENST00000578199.5_1_17:37851408-37864671:+|nuORF	ENST00000578199.5_1_17:37851408-37864671:+|nuORF	ENST00000578199.5_1_17:37851408-37864671:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.804443359375	2	509.804491	1017.59443	0.20635	0.0001052	-0.04208	-2.1452E-05	0.16427	8.3746E-05	510.3059797002877	116.18	0.44339	116.2	116	116.44	0.020988					79	54	2	0	0	0	0.34437	1	30107	30107		0.69038	0	1	45944			20453	12059	11567	11568	25648	25648					0.08633628962547846
KVSYDQLLLV	10	Unmodified	_KVSYDQLLLV_					0	0	0			REV__nc|ENSG00000147231|Q6NSI4-3|RADX	REV__nc|ENSG00000147231|Q6NSI4-3|RADX	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3433227539062	2	589.344989	1176.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.29	1	115.29	114.79	115.79	0								0	0	0	0.38189	1	29882	29882		1.1933	0.59184	1		+		20454	16380	11568	11569	25649	25649					0.09415427371436635
KVSYDQLLLV	10	Unmodified	_KVSYDQLLLV_					0	0	0			REV__nc|ENSG00000147231|Q6NSI4-3|RADX	REV__nc|ENSG00000147231|Q6NSI4-3|RADX	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3424072265625	2	589.344989	1176.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.71	1	115.71	115.21	116.21	0								0	0	0	0.38189	1	29979	29979		1.1933	0.12188	1		+		20455	16380	11568	11569	25650	25650					0.09415427371436635
KVTDKKEP	8	Unmodified	_KVTDKKEP_					0	0	0			REV__ENSG00000124356|ENST00000394070|STAMBP	REV__ENSG00000124356|ENST00000394070|STAMBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.77447509765625	2	472.7742	943.533846	-0.20394	-9.6419E-05	0.82052	0.00038792	0.61658	0.0002915	472.774448195758	14.469	0.34385	14.469	14.279	14.623	0					30	11	4	0	0	0	0.30157	1	746	746		30.637	0	1	117030	+		20456	15231	11569	11570	25651	25651					0.059820540689429436
KVTDKKEP	8	Unmodified	_KVTDKKEP_					0	0	0			REV__ENSG00000124356|ENST00000394070|STAMBP	REV__ENSG00000124356|ENST00000394070|STAMBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7744140625	2	472.7742	943.533846	-0.089351	-4.2243E-05	0.72261	0.00034163	0.63326	0.00029939	472.77448255293115	14.612	0.3535	14.507	14.238	14.592	-0.10466					28	11	3	0	0	0	0.3474	1	768	768		25.399	0	1	127660	+		20457	15231	11569	11570	25652	25652					0.059820540689429436
KVTDKKEP	8	Unmodified	_KVTDKKEP_					0	0	0			REV__ENSG00000124356|ENST00000394070|STAMBP	REV__ENSG00000124356|ENST00000394070|STAMBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7747802734375	2	472.7742	943.533846	-0.092793	-4.387E-05	0.67562	0.00031941	0.58282	0.00027554	472.7744805828936	14.608	0.4096	14.542	14.289	14.699	-0.066067					42	14	4	0	0	0	0.40115	1	776	776		19.257	0	1	105800	+		20458	15231	11569	11570	25653	25653					0.059820540689429436
KVTEGSFVYK	10	Unmodified	_KVTEGSFVYK_					0	0	0		ENSG00000057608|ENST00000380191|GDI2	ENSG00000057608|ENST00000380191|GDI2	ENSG00000057608|ENST00000380191|GDI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3139038085938	2	579.313689	1156.61282	0.46534	0.00026958	-0.084136	-4.8741E-05	0.38121	0.00022084	579.3136359958211	29.233	1.6881	29.233	28.76	30.448	0					159	60	5	0	0	0	1.247E-08	5	5203	5203;5247;5297;5341;5397		164.85	67.915	1	6423500			20459	722	11570	11571	25654;25655;25656;25657;25658	25654					0.040782813032365084
KVTEGSFVYK	10	Unmodified	_KVTEGSFVYK_					0	0	0		ENSG00000057608|ENST00000380191|GDI2	ENSG00000057608|ENST00000380191|GDI2	ENSG00000057608|ENST00000380191|GDI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.3139038085938	2	579.313689	1156.61282	0.33242	0.00019258	0.057489	3.3304E-05	0.38991	0.00022588	579.3136940320516	29.215	1.5067	29.227	28.831	30.338	0.012264					159	52	5	0	0	0	5.1917E-06	4	5195	5195;5247;5300;5375		153.7	56.764	1	6615000			20460	722	11570	11571	25659;25660;25661;25662	25659					0.040782813032365084
KVTIKKED	8	Unmodified	_KVTIKKED_					0	0	0		ENST00000498605.1_1_15:44093641-44093782:+|nuORF;ENST00000458412.1_2_15:44092902-44093782:+|nuORF;ENSG00000242028|ENST00000442995|HYPK	ENST00000498605.1_1_15:44093641-44093782:+|nuORF	ENST00000498605.1_1_15:44093641-44093782:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7896423339844	2	480.78985	959.565146	0.091943	4.4205E-05	-0.27178	-0.00013067	-0.17984	-8.6463E-05	480.7896514103545	16.555	0.48768	16.555	16.322	16.81	0					27	16	2	0	0	0	0.34294	1	1368	1368		7.2892	7.2892	1	88656			20461	8539	11571	11572	25663	25663					0.08374627103034982
KVTIKKED	8	Unmodified	_KVTIKKED_					0	0	0		ENST00000498605.1_1_15:44093641-44093782:+|nuORF;ENST00000458412.1_2_15:44092902-44093782:+|nuORF;ENSG00000242028|ENST00000442995|HYPK	ENST00000498605.1_1_15:44093641-44093782:+|nuORF	ENST00000498605.1_1_15:44093641-44093782:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7898254394531	2	480.78985	959.565146	0.04194	2.0164E-05	-0.00060159	-2.8924E-07	0.041338	1.9875E-05	480.7897945501044	16.659	0.55571	16.545	16.275	16.831	-0.11434					39	19	3	0	0	0	0.45431	1	1404	1404		4.3292	0	1	88718			20462	8539	11571	11572	25664	25664					0.08374627103034982
KVTKCVAEIS	10	Unmodified	_KVTKCVAEIS_					0	0	0			REV__ENSG00000176809|ENST00000584306|LRRC37A3;REV__ENSG00000185158|ENST00000543378|LRRC37B	REV__ENSG00000176809|ENST00000584306|LRRC37A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3026733398438	2	539.302267	1076.58998	0.45975	0.00024795	-0.51642	-0.0002785	-0.056664	-3.0559E-05	539.3018881182966	17.266	0.46794	17.266	17.069	17.537	0					29	16	2	0	0	0	0.40403	1	1583	1583		2.7352	0.43246	1	78835	+		20463	17946;18360	11572	11573	25665	25665					0.05474938914107952
KVTPTFHHW	9	Unmodified	_KVTPTFHHW_					0	0	0		SPRED1|p.R247Efs*2|1|0.22|ENSG00000166068|chr15:38351068-38351068|A/-|frameshift_variant;SPRED1|p.I248Tfs*6|1|0.23|ENSG00000166068|chr15:38351070-38351073|AATA/-|frameshift_variant;ENSG00000166068|ENST00000299084|SPRED1	SPRED1|p.R247Efs*2|1|0.22|ENSG00000166068|chr15:38351068-38351068|A/-|frameshift_variant	SPRED1|p.R247Efs*2|1|0.22|ENSG00000166068|chr15:38351068-38351068|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.7999877929688	2	576.801083	1151.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.275	1	92.275	91.775	92.775	0								0	0	0	0.25631	1	24535	24535		4.3292	0.73274	1				20464	6027	11573	11574	25666	25666					0.017882712913205978
KVTRQSPNSYV	11	Unmodified	_KVTRQSPNSYV_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.84716796875	2	639.843676	1277.6728	0.3811	0.00024385	-0.46488	-0.00029745	-0.083778	-5.3605E-05	639.8435595937475	91.065	0.63921	91.065	90.807	91.446	0					249	47	7	0	0	0	0.36943	3	24142	24142;24158;24202		15.248	4.449	1	11734000			20465	8743	11574	11575	25667;25668;25669	25667					0.04506971966452511
KVTRQSPNSYV	11	Unmodified	_KVTRQSPNSYV_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	639.8433837890625	2	639.843676	1277.6728	0.011937	7.6375E-06	0.043034	2.7535E-05	0.05497	3.5172E-05	639.8438516379643	98.246	0.545	98.246	98.026	98.571	0					232	63	6	0	0	0	0.43149	1	26232	26232		7.1017	1.3699	1	1159500			20466	8743	11574	11575	25670	25670					0.04506971966452511
KVTRQSPNSYV	11	Unmodified	_KVTRQSPNSYV_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	639.8436279296875	2	639.843676	1277.6728	0.52397	0.00033526	-0.59094	-0.00037811	-0.066976	-4.2854E-05	639.8434770334056	90.936	0.69865	91.027	90.766	91.465	0.090675					260	51	7	0	0	0	0.42346	3	24106	24106;24145;24189		8.1555	2.4237	1	10974000			20467	8743	11574	11575	25671;25672;25673	25671					0.04506971966452511
KVTYGLEKT	9	Unmodified	_KVTYGLEKT_					0	0	0			REV__ENST00000296325.9_1_4:3514703-3533784:-|nuORF	REV__ENST00000296325.9_1_4:3514703-3533784:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7517700195312	2	519.795132	1037.57571	0.30802	0.0001601	-0.24733	-0.00012856	0.060688	3.1546E-05	519.7949486107752	31.361	0.44192	31.402	31.178	31.62	0.040991					34	15	3	0	0	0	0.19686	1	5834	5834		31.268	5.869	1	800400	+		20468	17109	11575	11576	25674	25674					0.058426097574511004
KVVALKITN	9	Unmodified	_KVVALKITN_					0	0	0		nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;ENST00000532267.1_1_11:43351536-43357422:+|nuORF	nc|ENSG00000166181|Q9BZZ5-2|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8135681152344	2	493.32386	984.633166	0.061776	3.0476E-05	0.45505	0.00022449	0.51682	0.00025496	493.32398934066777	12.975	0.34	12.876	12.757	13.097	-0.09929					23	11	4	0	0	0	0.25949	1	303	303		4.897	1.9018	1	52105			20469	6041	11576	11577	25675	25675					0.14023496753679865
KVVAPTISSPV	11	Unmodified	_KVVAPTISSPV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.33251953125	2	549.331882	1096.64921	0.30962	0.00017008	-0.0036431	-2.0013E-06	0.30597	0.00016808	549.3318855737419	33.198	0.77943	33.198	32.895	33.674	0					60	27	3	0	0	0	0.42346	1	6465	6465		8.1555	0	1	226910			20470	4024	11577	11578	25676	25676					0.10475158199960788
KVVASVHASIS	11	Unmodified	_KVVASVHASIS_					0	0	0		AGFG1|p.A225Tfs*19|1|0.03|ENSG00000173744|chr2:227524894-227524895|GC/-|frameshift_variant;nc|ENSG00000173744|P52594-2|AGFG1;nc|ENSG00000173744|P52594-3|AGFG1;ENSG00000173744|ENST00000310078|AGFG1;nc|ENSG00000173744|P52594-4|AGFG1	AGFG1|p.A225Tfs*19|1|0.03|ENSG00000173744|chr2:227524894-227524895|GC/-|frameshift_variant	AGFG1|p.A225Tfs*19|1|0.03|ENSG00000173744|chr2:227524894-227524895|GC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3191528320312	2	549.319306	1096.62406	0.20259	0.00011128	-0.61245	-0.00033643	-0.40987	-0.00022515	549.3191159818897	12.309	0.40099	12.212	12.122	12.523	-0.096607					31	13	3	0	0	0	0.42762	1	99	99		7.609	0	1	85685			20471	20	11578	11579	25677	25677					0.0796110339738334
KVVATLLKN	9	Unmodified	_KVVATLLKN_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8135070800781	2	493.32386	984.633166	-0.066564	-3.2838E-05	0.41922	0.00020681	0.35266	0.00017397	493.32390157059774	12.987	0.25567	12.92	12.791	13.047	-0.067496					18	8	3	0	0	0	0.26099	1	295	295		2.9952	0	1	55977			20472	6673	11579	11580	25678	25678					0.1402349675371397
KVVAVNNV	8	Unmodified	_KVVAVNNV_					0	0	0			REV__ENSG00000198944|ENST00000378693|SOWAHA	REV__ENSG00000198944|ENST00000378693|SOWAHA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.7582092285156	2	421.758352	841.502152	-0.28843	-0.00012165	0.19421	8.1908E-05	-0.09422	-3.9738E-05	421.7583011584997	12.546	0.62866	12.45	12.268	12.897	-0.096607					41	21	3	0	0	0	0.46022	1	211	211		2.3027	0	1	389360	+		20473	18897	11580	11581	25679	25679					0.07506106105665822
KVVDLSKYN	9	Unmodified	_KVVDLSKYN_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3004150390625	2	533.300581	1064.58661	0.42793	0.00022822	0.094681	5.0494E-05	0.52261	0.00027871	533.3005629725718	24.216	1.0069	24.177	23.848	24.855	-0.038927					101	34	4	0	0	0	0.32638	1	3859	3859		4.897	0	1	1994600	+		20474	14042	11581	11582	25680	25680					0.056900121317767116
KVVDPFSKK	9	Unmodified	_KVVDPFSKK_					0	0	0		ENST00000507485.1_1_4:152020792-152024033:+|nuORF;ENSG00000145425|ENST00000274065|RPS3A	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3145751953125	2	524.313492	1046.61243	0.63125	0.00033098	-0.93984	-0.00049277	-0.30858	-0.00016179	524.3128563835087	21.028	0.31312	21.028	20.825	21.138	0					12	10	2	0	0	0	0.32638	1	2685	2685		4.897	1.6157	1	34931			20475	4651	11582	11583	25681	25681					0.09098906374038052
KVVDPFSKK	9	Unmodified	_KVVDPFSKK_					0	0	0		ENST00000507485.1_1_4:152020792-152024033:+|nuORF;ENSG00000145425|ENST00000274065|RPS3A	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	524.313492	1046.61243	0.70797	0.0003712	-0.54877	-0.00028773	0.15919	8.3467E-05	524.3134117205252	21.216	0.3422	21.106	20.836	21.178	-0.11003	0.045681	0.00025846	NaN	4.897	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52619			20476	4651	11582	11583							0.09098906374038052
KVVDPFSKK	9	Unmodified	_KVVDPFSKK_					0	0	0		ENST00000507485.1_1_4:152020792-152024033:+|nuORF;ENSG00000145425|ENST00000274065|RPS3A	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	ENST00000507485.1_1_4:152020792-152024033:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.313492	1046.61243	0.63107	0.00033088	-0.95334	-0.00049985	-0.32227	-0.00016897	524.3132070830826	21.099	0.28299	21.046	20.835	21.118	-0.05291	-0.014198	-0.00016577	NaN	4.897	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38604			20477	4651	11582	11583							0.09098906374038052
KVVDSLYNK	9	Unmodified	_KVVDSLYNK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11;ENST00000585265.1_1_17:30807457-30807646:+|nuORF	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3008422851562	2	533.300581	1064.58661	0.38605	0.00020588	0.11451	6.1067E-05	0.50056	0.00026695	533.3005698048346	24.032	1.0828	24.032	23.734	24.817	0					105	36	4	0	0	0	2.4074E-11	6	3633	3586;3633;3674;3691;3721;3737		195.45	73.273	1	1754100			20478	2207	11583	11584	25682;25683;25684;25685;25686;25687	25683					0.05690012131753974
KVVDSLYNK	9	Unmodified	_KVVDSLYNK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11;ENST00000585265.1_1_17:30807457-30807646:+|nuORF	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.30078125	2	533.300581	1064.58661	0.3337	0.00017797	0.2163	0.00011535	0.55	0.00029332	533.3006127137498	24.228	1.0001	24.156	23.821	24.821	-0.072559					102	33	4	0	0	0	2.4074E-11	4	3686	3637;3686;3731;3740		195.45	73.273	1	1796700			20479	2207	11583	11584	25688;25689;25690;25691	25689					0.05690012131753974
KVVDSLYNK	9	Unmodified	_KVVDSLYNK_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11;ENST00000585265.1_1_17:30807457-30807646:+|nuORF	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.30078125	2	533.300581	1064.58661	0.42793	0.00022822	0.094681	5.0494E-05	0.52261	0.00027871	533.3005629725718	24.216	1.0069	24.177	23.848	24.855	-0.038927					101	34	4	0	0	0	6.5985E-11	4	3665	3619;3665;3709;3753		181.69	71.016	1	1994600			20480	2207	11583	11584	25692;25693;25694;25695	25693					0.05690012131753974
KVVEGSFVYK	10	Unmodified	_KVVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.32421875	2	578.324057	1154.63356	0.20824	0.00012043	0.20059	0.00011601	0.40883	0.00023644	578.3239596433813	31.753	1.0537	31.753	31.502	32.556	0					60	37	4	0	0	0	0.0021517	2	6003	5955;6003		108.26	80.633	1	1552300			20481	8190	11584	11585	25696;25697	25697					0.062428716828890174
KVVEGSFVYK	10	Unmodified	_KVVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3240356445312	2	578.324057	1154.63356	0.31996	0.00018504	-0.026266	-1.519E-05	0.29369	0.00016985	578.3237545541715	31.688	0.95026	31.73	31.487	32.437	0.042366					58	33	3	0	0	0	0.0021517	2	5945	5945;5999		108.26	73.86	1	1834400			20482	8190	11584	11585	25698;25699	25698					0.062428716828890174
KVVEGSFVYK	10	Unmodified	_KVVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.323974609375	2	578.324057	1154.63356	0.27776	0.00016064	0.18489	0.00010693	0.46265	0.00026756	578.3238483510063	31.678	0.76303	31.719	31.447	32.21	0.040991					52	26	4	0	0	0	0.0016549	3	5932	5907;5932;5991		112.04	77.639	1	1599300			20483	8190	11584	11585	25700;25701;25702	25701					0.062428716828890174
KVVLEMSLI	9	Unmodified	_KVVLEMSLI_					0	0	0			REV__ENST00000457841.5_3_2:220092748-220094285:-|nuORF	REV__ENST00000457841.5_3_2:220092748-220094285:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.8026733398438	2	516.312103	1030.60965	0.3341	0.0001725	4.341	0.0022413	4.6751	0.0024138	516.3161139699422	87.412	0.11693	87.499	87.459	87.576	0.08709					6	4	2	0	0	0	0.27532	1	23050	23050		12.532	4.6214	1	53973	+		20484	20750	11585	11586	25703	25703					0.09557314924882121
KVVNIVPVIAK	11	Unmodified	_KVVNIVPVIAK_					0	0	0		nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.7858276367188	2	590.394816	1178.77508	0.57891	0.00034178	0.33458	0.00019754	0.91349	0.00053932	590.3950215283181	44.455	0.13516	44.523	44.463	44.599	0.068569					6	4	2	0	0	0	0.32557	1	9843	9843		15.248	9.9516	1	76578			20485	7467	11586	11587	25704	25704					0.19284289776032892
KVVNPLFEK	9	Unmodified	_KVVNPLFEK_					0	0	0		RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENSG00000148303|ENST00000323345|RPL7A;ENST00000416120.1_1_6:64259201-64259360:-|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF	RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant;ENST00000468834.1_1_10:33346560-33347304:-|nuORF	RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.3212890625	2	537.321317	1072.62808	-0.11408	-6.13E-05	-0.30626	-0.00016456	-0.42034	-0.00022586	537.3210370631992	34.398	1.2523	34.398	34.023	35.276	0					116	44	4	0	0	0	0.0091837	2	6845	6845;6896		80.676	0	1	3084000			20486	4801;10843	11587	11588	25705;25706	25705					0.09467192891065679
KVVNPLFEK	9	Unmodified	_KVVNPLFEK_					0	0	0		RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENSG00000148303|ENST00000323345|RPL7A;ENST00000416120.1_1_6:64259201-64259360:-|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF	RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant;ENST00000468834.1_1_10:33346560-33347304:-|nuORF	RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.3212890625	2	537.321317	1072.62808	-0.22441	-0.00012058	-0.32113	-0.00017255	-0.54554	-0.00029313	537.3210358724597	34.276	1.4328	34.342	33.904	35.337	0.06636					129	49	5	0	0	0	0.015027	1	6808	6808		71.708	0	1	2818800			20487	4801;10843	11587	11588	25707	25707					0.09467192891065679
KVVNPLFEK	9	Unmodified	_KVVNPLFEK_					0	0	0		RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENSG00000148303|ENST00000323345|RPL7A;ENST00000416120.1_1_6:64259201-64259360:-|nuORF;ENST00000486157.1_1_5:78825151-78825526:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF	RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant;ENST00000468834.1_1_10:33346560-33347304:-|nuORF	RPL7A|p.D127Rfs*14|1|0.17|ENSG00000148303|chr9:133350013-133350014|GG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.3212890625	2	537.321317	1072.62808	0.17996	9.6697E-05	-0.66227	-0.00035585	-0.48231	-0.00025916	537.3208457628996	34.229	1.2487	34.295	33.907	35.156	0.066704					134	43	5	0	0	0	0.003673	1	6797	6797		96.936	0	1	3019600			20488	4801;10843	11587	11588	25708	25708					0.09467192891065679
KVVSKPKQ	8	Unmodified	_KVVSKPKQ_					0	0	0			REV__CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant	REV__CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7735290527344	2	457.295102	912.575651	-0.1691	-7.733E-05	-0.35205	-0.00016099	-0.52115	-0.00023832	457.29493950606957	12.809	0.17938	12.71	12.578	12.757	-0.099291					8	5	2	0	0	0	0.34408	1	221	221		2.3027	0	1	10395	+		20489	13137	11588	11589	25709	25709					0.11586654548125352
KVVTSEKAGK	10	Unmodified	_KVVTSEKAGK_					0	0	0		ENST00000529239.1_1_8:61851633-61851774:-|nuORF	ENST00000529239.1_1_8:61851633-61851774:-|nuORF	ENST00000529239.1_1_8:61851633-61851774:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.8133544921875	2	523.813856	1045.61316	0.40466	0.00021197	-0.34973	-0.00018319	0.054932	2.8774E-05	523.8135534490312	17.824	0.49858	17.824	17.66	18.158	0					36	16	3	0	0	0	0.35231	1	1741	1741		12.241	0	1	125690			20490	11598	11589	11590	25710	25710					0.0921770102308983
KVVVSPTKK	9	Unmodified	_KVVVSPTKK_					0	0	0		NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant;ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.8135986328125	2	493.32386	984.633166	0.038404	1.8946E-05	0.097896	4.8295E-05	0.1363	6.724E-05	493.3237810034882	12.917	0.24316	12.917	12.815	13.058	0					19	8	3	0	0	0	0.25949	1	280	280		4.897	1.9018	1	53745			20491	2603	11590	11591	25711	25711					0.14023496753691234
KVWQHNPF	8	Unmodified	_KVWQHNPF_					0	0	0			REV__ENSG00000196396|ENST00000371621|PTPN1	REV__ENSG00000196396|ENST00000371621|PTPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.77197265625	2	528.274701	1054.53485	0.39678	0.00020961	-1.8252	-0.00096421	-1.4284	-0.0007546	528.2758979214666	48.833	1.3394	48.865	48.497	49.837	0.032043					167	48	5	0	0	0	0.42758	1	11126	11126		13.508	0.97634	1	8624700	+		20492	18648	11591	11592	25712	25712					0.009763132285115717
KVYDKAINR	9	Unmodified	_KVYDKAINR_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8195190429688	2	553.819473	1105.62439	0.15849	8.7776E-05	0.15965	8.8419E-05	0.31815	0.0001762	553.8192104060184	16.006	0.64128	16.006	15.654	16.295	0					46	22	4	0	0	0	0.18378	2	1192	1192;1244		26.021	13.78	1	166160			20493	5810;11415	11592	11593	25713;25714	25713					0.07580523117235316
KVYDKAINR	9	Unmodified	_KVYDKAINR_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8195190429688	2	553.819473	1105.62439	0.1426	7.8973E-05	0.25349	0.00014038	0.39608	0.00021936	553.8193209358609	16.183	0.58189	16.069	15.748	16.33	-0.11434					48	19	4	0	0	0	0.25714	2	1283	1230;1283		15.248	7.9593	1	128310			20494	5810;11415	11592	11593	25715;25716	25716					0.07580523117235316
KVYDKAINR	9	Unmodified	_KVYDKAINR_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8195190429688	2	553.819473	1105.62439	0.14966	8.2884E-05	0.16115	8.9247E-05	0.31081	0.00017213	553.8192096141613	16.054	0.5642	15.991	15.701	16.266	-0.062534					44	19	4	0	0	0	0.1426	2	1213	1213;1260		32.037	20.397	1	183700			20495	5810;11415	11592	11593	25717;25718	25717					0.07580523117235316
KVYEGERPLTK	11	Unmodified	_KVYEGERPLTK_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.58209228515625	3	440.58211	1318.7245	-0.07991	-3.5207E-05	0.27792	0.00012245	0.19801	8.7239E-05	440.5821057029392	19.189	0.98151	19.189	18.923	19.905	0					92	34	4	0	0	0	0.17342	2	2171	2123;2171		33.593	24.617	1	663340			20496	623	11593	11594	25719;25720	25720					0.0778871566037651
KVYEGERPLTK	11	Unmodified	_KVYEGERPLTK_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.58203125	3	440.58211	1318.7245	0.0098613	4.3447E-06	0.13762	6.0632E-05	0.14748	6.4976E-05	440.582067472596	19.383	1.0036	19.268	18.977	19.981	-0.11592					97	34	4	0	0	0	0.056842	2	2239	2192;2239		51.264	35.725	1	682780			20497	623	11593	11594	25721;25722	25722					0.0778871566037651
KVYEGERPLTK	11	Unmodified	_KVYEGERPLTK_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.58203125	3	440.58211	1318.7245	0.074743	3.293E-05	0.096907	4.2695E-05	0.17165	7.5626E-05	440.5820559980925	19.347	1.0451	19.291	18.989	20.034	-0.055693					102	36	4	0	0	0	0.04957	2	2216	2176;2216		53.367	37.628	1	591020			20498	623	11593	11594	25723;25724	25724					0.0778871566037651
KVYGPGVAK	9	Unmodified	_KVYGPGVAK_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7742614746094	2	459.774003	917.533452	-0.024217	-1.1134E-05	0.70704	0.00032508	0.68282	0.00031394	459.7743789878601	16.752	1.2813	16.752	15.816	17.097	0					74	44	2	0	0	0	0.29176	1	1369	1369		10.074	2.7847	1	179650			20499	7913	11594	11595	25725	25725					0.07138679139745818
KVYGPGVAK	9	Unmodified	_KVYGPGVAK_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.7742004394531	2	459.774003	917.533452	-0.10494	-4.8249E-05	0.77003	0.00035404	0.66509	0.00030579	459.77430397012466	16.854	0.89281	16.74	16.247	17.14	-0.11434					55	31	2	0	0	0	0.31417	1	1402	1402		6.7232	0.96273	1	193410			20500	7913	11594	11595	25726	25726					0.07138679139745818
KVYGPGVAK	9	Unmodified	_KVYGPGVAK_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7746276855469	2	459.774003	917.533452	0.18406	8.4627E-05	0.66138	0.00030409	0.84544	0.00038871	459.77429060239837	16.805	0.92177	16.743	16.205	17.127	-0.062534					55	32	2	0	0	0	0.23007	1	1375	1375		19.257	5.3509	1	164560			20501	7913	11594	11595	25727	25727					0.07138679139745818
KVYPGEQYTY	10	Unmodified	_KVYPGEQYTY_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.3009643554688	2	624.300778	1246.587	0.0056274	3.5132E-06	0.4484	0.00027994	0.45403	0.00028345	624.3009686960745	39.452	1.0289	39.452	39.164	40.193	0					107	37	4	0	0	0	0.0021517	4	8339	8293;8339;8380;8433		108.26	78.421	1	2048100			20502	632	11595	11596	25728;25729;25730;25731	25729					-0.026426129390301867
KVYPGEQYTY	10	Unmodified	_KVYPGEQYTY_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3009643554688	2	624.300778	1246.587	0.23075	0.00014406	0.2486	0.0001552	0.47935	0.00029926	624.3008894290662	39.307	0.9343	39.407	39.128	40.062	0.099407					90	33	4	0	0	0	0.0011942	3	8282	8235;8282;8328		118.21	90.986	1	2673200			20503	632	11595	11596	25732;25733;25734	25733					-0.026426129390301867
KVYTKSSHLK	10	Unmodified	_KVYTKSSHLK_					0	0	0		ENSG00000109787|ENST00000261438|KLF3;ENST00000358094.7_1_X:56295423-56310924:+|nuORF;ENST00000462627.5_1_X:56295800-56310924:+|nuORF;nc|ENSG00000067082|Q99612-3|KLF6;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000118263|O75840-4|KLF7;nc|ENSG00000067082|Q99612-2|KLF6;ENSG00000067082|ENST00000497571|KLF6;ENSG00000118263|ENST00000309446|KLF7;nc|ENSG00000102554|Q13887-2|KLF5;ENSG00000102349|ENST00000468660|KLF8;nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000118922|ENST00000703967|KLF12;ENSG00000102554|ENST00000377687|KLF5	ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.8480224609375	2	595.84823	1189.68191	0.11989	7.1437E-05	-0.22486	-0.00013398	-0.10497	-6.2547E-05	595.8479051003296	12.713	0.34715	12.713	12.526	12.874	0					19	11	3	0	0	0	0.39612	1	221	221		4.1895	0	1	99329			20504	2272	11596	11597	25735	25735					0.09465365322785146
KVYTKSSHLK	10	Unmodified	_KVYTKSSHLK_					0	0	0		ENSG00000109787|ENST00000261438|KLF3;ENST00000358094.7_1_X:56295423-56310924:+|nuORF;ENST00000462627.5_1_X:56295800-56310924:+|nuORF;nc|ENSG00000067082|Q99612-3|KLF6;nc|ENSG00000118263|O75840-2|KLF7;nc|ENSG00000118263|O75840-4|KLF7;nc|ENSG00000067082|Q99612-2|KLF6;ENSG00000067082|ENST00000497571|KLF6;ENSG00000118263|ENST00000309446|KLF7;nc|ENSG00000102554|Q13887-2|KLF5;ENSG00000102349|ENST00000468660|KLF8;nc|ENSG00000102554|Q13887-4|KLF5;ENSG00000118922|ENST00000703967|KLF12;ENSG00000102554|ENST00000377687|KLF5	ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.8482666015625	2	595.84823	1189.68191	-0.022732	-1.3545E-05	0.045085	2.6864E-05	0.022353	1.3319E-05	595.848214215229	12.75	0.27105	12.682	12.58	12.851	-0.067496					17	8	3	0	0	0	0.37297	1	227	227		8.4443	2.2525	1	95621			20505	2272	11596	11597	25736	25736					0.09465365322785146
KVYYPKYLSK	10	Unmodified	_KVYYPKYLSK_					0	0	0		nc|ENSG00000130150|Q8NHP6-2|MOSPD2;ENSG00000130150|ENST00000380492|MOSPD2	nc|ENSG00000130150|Q8NHP6-2|MOSPD2	nc|ENSG00000130150|Q8NHP6-2|MOSPD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8880615234375	3	430.24818	1287.72271	0.038063	1.6376E-05	-0.47198	-0.00020307	-0.43392	-0.00018669	430.24808168471355	30.084	1.0335	30.084	29.465	30.499	0					91	36	3	0	0	0	0.32124	1	5544	5544		2.4348	2.4348	1	493260			20506	3452	11597	11598	25737	25737					0.09035706642407604
KVYYPKYLSK	10	Unmodified	_KVYYPKYLSK_					0	0	0		nc|ENSG00000130150|Q8NHP6-2|MOSPD2;ENSG00000130150|ENST00000380492|MOSPD2	nc|ENSG00000130150|Q8NHP6-2|MOSPD2	nc|ENSG00000130150|Q8NHP6-2|MOSPD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8882751464844	3	430.24818	1287.72271	0.0047273	2.0339E-06	-0.37775	-0.00016253	-0.37302	-0.00016049	430.2480838610202	30.002	1.3479	30.015	29.302	30.65	0.012264					111	46	3	0	0	0	0.31618	1	5389	5389		10.016	7.9323	1	452010			20507	3452	11597	11598	25738	25738					0.09035706642407604
KWCFVPSYHL	10	Unmodified	_KWCFVPSYHL_					0	0	0			REV__ENST00000545259.1_1_12:118509122-118511537:-|nuORF	REV__ENST00000545259.1_1_12:118509122-118511537:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.58221435546875	3	427.214593	1278.62195	-0.12843	-5.4868E-05	1.1629	0.0004968	1.0344	0.00044193	427.21494534921334	19.262	0.68189	19.207	19.08	19.762	-0.055693					48	23	3	0	0	0	0.31942	1	2329	2329		6.1918	1.1443	1	172440	+		20508	17951	11598	11599	25739	25739					-0.006216486120820264
KWCFVPSYHL	10	Unmodified	_KWCFVPSYHL_					0	0	0			REV__ENST00000545259.1_1_12:118509122-118511537:-|nuORF	REV__ENST00000545259.1_1_12:118509122-118511537:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	427.214593	1278.62195	-0.17915	-7.6534E-05	1.1398	0.00048696	0.96069	0.00041042	427.2150477492671	19.388	0.51257	19.273	19.031	19.544	-0.11592	0.04079	1.6917E-05	NaN	6.1918	45	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144080	+		20509	17951	11598	11599							-0.006216486120820264
KWDDPYYDI	9	Unmodified	_KWDDPYYDI_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000529960.5_1_11:46709721-46722147:-|nuORF;ENST00000524594.1_1_11:46717069-46722147:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.517578125	3	405.516995	1213.52915	-0.32804	-0.00013303	1.2668	0.00051369	0.93872	0.00038067	405.5176611774454	15.107	0.3314	14.997	14.789	15.121	-0.10981					19	11	2	0	0	0	0.34085	1	936	936		2.7352	0.23671	1	92302			20510	6848	11599	11600	25740	25740					-0.0690687486448951
KWDDPYYDI	9	Unmodified	_KWDDPYYDI_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000529960.5_1_11:46709721-46722147:-|nuORF;ENST00000524594.1_1_11:46717069-46722147:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.516995	1213.52915	-0.37053	-0.00015026	1.4302	0.00057996	1.0596	0.0004297	405.51756217132805	15.122	0.34944	15.057	14.898	15.247	-0.064413	0.030059	0.00011124	NaN	2.7352	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97736			20511	6848	11599	11600							-0.0690687486448951
KWERIQVY	8	Unmodified	_KWERIQVY_					0	0	0			REV__ENSG00000198756|ENST00000361927|COLGALT2	REV__ENSG00000198756|ENST00000361927|COLGALT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.2957763671875	2	561.308741	1120.60293	-0.18198	-0.00010215	3.0733	0.0017251	2.8913	0.0016229	561.3105077877194	12.515	0.17443	12.447	12.345	12.519	-0.06806					9	5	3	0	0	0	0.46092	1	155	155		2.0598	0.21551	1	19901	+		20512	18856	11600	11601	25741	25741					0.047451380885149774
KWERIQVY	8	Unmodified	_KWERIQVY_					0	0	0			REV__ENSG00000198756|ENST00000361927|COLGALT2	REV__ENSG00000198756|ENST00000361927|COLGALT2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	561.308741	1120.60293	-0.067524	-3.7902E-05	3.2334	0.0018149	3.1658	0.001777	561.8120811859797	12.484	0.19113	12.484	12.364	12.555	0	0.044964	0.00035797	NaN	2.0598	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21374	+		20513	18856	11600	11601							0.047451380885149774
KWERIQVY	8	Unmodified	_KWERIQVY_					0	0	0			REV__ENSG00000198756|ENST00000361927|COLGALT2	REV__ENSG00000198756|ENST00000361927|COLGALT2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.308741	1120.60293	0.066071	3.7086E-05	2.0481	0.0011496	2.1142	0.0011867	561.8113306383931	12.483	0.19803	12.387	12.295	12.493	-0.096607	-0.052659	-0.00097262	NaN	2.0598	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26914	+		20514	18856	11600	11601							0.047451380885149774
KWERIQVY	8	Unmodified	_KWERIQVY_					0	0	0			REV__ENSG00000198756|ENST00000361927|COLGALT2	REV__ENSG00000198756|ENST00000361927|COLGALT2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	561.308741	1120.60293	-0.18198	-0.00010215	3.0733	0.0017251	2.8913	0.0016229	561.3105077877194	12.515	0.17443	12.447	12.345	12.519	-0.06806	0.0076953	0.00017826	NaN	2.0598	9	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19901	+		20515	18856	11600	11601							0.047451380885149774
KWFFCIFTL	9	Unmodified	_KWFFCIFTL_					0	0	0			REV__ENST00000407924.2_1_6:27705341-27705923:-|nuORF	REV__ENST00000407924.2_1_6:27705341-27705923:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8153076171875	2	602.814813	1203.61507	0.20374	0.00012282	0.18774	0.00011317	0.39148	0.00023599	602.8149248143347	15.978	0.83004	15.915	15.638	16.468	-0.062534					88	28	5	0	0	0	0.34536	1	1321	1321		2.0598	0	1	1300200	+		20516	20747	11601	11602	25742	25742					0.021410385073522775
KWFFHVII	8	Unmodified	_KWFFHVII_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3173828125	2	545.315838	1088.61712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.83	1	112.81	112.31	113.31	-0.017303								0	0	0	0.37724	1	29341	29341		2.3027	0.4585	1				20517	1341	11602	11603	25743	25743					0.07635835307473826
KWFRRIEE	8	Unmodified	_KWFRRIEE_					0	0	0			REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27	REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.3200073242188	2	582.31964	1162.62473	0.27175	0.00015825	1.2196	0.00071021	1.4914	0.00086845	582.8220878474535	16.556	0.29321	16.494	16.324	16.617	-0.062534					14	9	2	0	0	0	0.46022	1	1358	1358		2.3027	0	1	35776	+		20518	16435	11603	11604	25744	25744					0.04991942837091301
KWFRRIEE	8	Unmodified	_KWFRRIEE_					0	0	0			REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27	REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	582.31964	1162.62473	0.19118	0.00011133	0.33543	0.00019533	0.52661	0.00030666	582.3195187891101	16.538	0.33995	16.538	16.349	16.689	0	-0.0005486	-0.00063177	NaN	2.3027	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27748	+		20519	16435	11603	11604							0.04991942837091301
KWFRRIEE	8	Unmodified	_KWFRRIEE_					0	0	0			REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27	REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	582.31964	1162.62473	0.083463	4.8602E-05	0.92789	0.00054033	1.0114	0.00058893	582.3199239905863	16.698	0.24294	16.584	16.395	16.638	-0.11434	0.045206	5.8234E-05	NaN	2.3027	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27601	+		20520	16435	11603	11604							0.04991942837091301
KWFRRIEE	8	Unmodified	_KWFRRIEE_					0	0	0			REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27	REV__nc|ENSG00000148814|Q9C0I9-4|LRRC27	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	582.31964	1162.62473	0.27175	0.00015825	1.2196	0.00071021	1.4914	0.00086845	582.8220878474535	16.556	0.29321	16.494	16.324	16.617	-0.062534	-0.044658	0.00039799	NaN	2.3027	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35776	+		20521	16435	11603	11604							0.04991942837091301
KWFVLMLL	8	Unmodified	_KWFVLMLL_					0	0	0		ENST00000262662.5_1_1:51440237-51440288:+|nuORF	ENST00000262662.5_1_1:51440237-51440288:+|nuORF	ENST00000262662.5_1_1:51440237-51440288:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.72509765625	2	525.314449	1048.61435	0.20465	0.00010751	-0.72922	-0.00038307	-0.52457	-0.00027556	525.3138625071047	14.433	0.28414	14.433	14.307	14.591	0					13	9	2	0	0	0	0.34437	1	731	731		0.69038	0	1	35788			20522	8988	11604	11605	25745	25745					0.09198243858304522
KWFVLMLL	8	Unmodified	_KWFVLMLL_					0	0	0		ENST00000262662.5_1_1:51440237-51440288:+|nuORF	ENST00000262662.5_1_1:51440237-51440288:+|nuORF	ENST00000262662.5_1_1:51440237-51440288:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	525.314449	1048.61435	0.18474	9.7045E-05	-0.53412	-0.00028058	-0.34938	-0.00018354	525.3139434055778	14.562	0.196	14.457	14.396	14.592	-0.10466	-0.0035152	-0.00010864	NaN	0.69038	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27313			20523	8988	11604	11605							0.09198243858304522
KWFVLMLL	8	Unmodified	_KWFVLMLL_					0	0	0		ENST00000262662.5_1_1:51440237-51440288:+|nuORF	ENST00000262662.5_1_1:51440237-51440288:+|nuORF	ENST00000262662.5_1_1:51440237-51440288:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	525.314449	1048.61435	0.18633	9.7881E-05	-0.24666	-0.00012958	-0.060334	-3.1695E-05	525.3141785551261	14.558	0.21603	14.492	14.4	14.616	-0.066068	0.03101	0.00019338	NaN	0.69038	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32992			20524	8988	11604	11605							0.09198243858304522
KWGPRREEVK	10	Unmodified	_KWGPRREEVK_					0	0	0		ENSG00000088808|ENST00000202556|PPP1R13B;PPP1R13B|p.S577Kfs*15|1|0.31|ENSG00000088808|chr14:103741884-103741885|-/G|frameshift_variant;ENST00000554136.1_1_14:104245060-104313644:-|nuORF	ENSG00000088808|ENST00000202556|PPP1R13B	ENSG00000088808|ENST00000202556|PPP1R13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.9103698730469	3	428.910561	1283.70985	-0.26101	-0.00011195	0.11375	4.8787E-05	-0.14727	-6.3164E-05	428.91053771606965	31.305	0.74705	31.305	30.889	31.636	0					72	26	4	0	0	0	0.35961	1	5822	5822		10.899	2.9536	1	560730			20525	1329	11605	11606	25746	25746					0.07934688302862014
KWGPRREEVK	10	Unmodified	_KWGPRREEVK_					0	0	0		ENSG00000088808|ENST00000202556|PPP1R13B;PPP1R13B|p.S577Kfs*15|1|0.31|ENSG00000088808|chr14:103741884-103741885|-/G|frameshift_variant;ENST00000554136.1_1_14:104245060-104313644:-|nuORF	ENSG00000088808|ENST00000202556|PPP1R13B	ENSG00000088808|ENST00000202556|PPP1R13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.91015625	3	428.910561	1283.70985	-0.11076	-4.7504E-05	-0.26198	-0.00011237	-0.37274	-0.00015987	428.9104845858453	31.215	0.66075	31.256	30.959	31.62	0.040989					67	23	4	0	0	0	0.32877	1	5781	5781		16.566	6.8016	1	477100			20526	1329	11605	11606	25747	25747					0.07934688302862014
KWGRTADR	8	Unmodified	_KWGRTADR_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.26904296875	2	495.267407	988.520262	0.22336	0.00011062	3.1417	0.001556	3.365	0.0016666	495.26869004585217	15.934	0.41822	15.934	15.734	16.152	0					30	14	3	0	0	0	0.44734	1	1182	1182		6.7232	1.4925	1	60623	+		20527	15602	11606	11607	25748	25748					0.025542410803609528
KWHHIAWL	8	Unmodified	_KWHHIAWL_					0	0	0			REV__nc|ENSG00000121749|Q8TC07|TBC1D15	REV__nc|ENSG00000121749|Q8TC07|TBC1D15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8308715820312	2	545.800886	1089.58722	0.43939	0.00023982	-1.7665	-0.00096415	-1.3271	-0.00072433	545.7978425604462	28.987	0.49014	29	28.758	29.248	0.013474					29	17	3	0	0	0	0.34218	1	5121	5121		9.3474	0	1	92328	+		20528	22971	11607	11608	25749	25749					0.0460089636212615
KWHRLKRLK	9	Unmodified	_KWHRLKRLK_					0	0	0			REV__ENST00000501499.1_1_12:98880883-98897610:-|nuORF	REV__ENST00000501499.1_1_12:98880883-98897610:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2756042480469	3	422.275286	1263.80403	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.59	1	104.6	104.1	105.1	0.0011444								0	0	0	0.26581	1	27793	27793		1.1933	0.68739	1		+		20529	21709	11608	11609	25750	25750					0.18267871915668366
KWKFANEERRP	11	Unmodified	_KWKFANEERRP_					0	0	0			REV__ENST00000338754.8_2_22:26922169-26924190:-|nuORF	REV__ENST00000338754.8_2_22:26922169-26924190:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7851867675781	3	487.596753	1459.76843	0.5884	0.0002869	-1.5954	-0.00077793	-1.007	-0.00049103	487.5958938319739	20.489	0.33601	20.436	20.387	20.723	-0.05291					18	11	2	0	0	0	0.3333	1	2586	2586		1.3296	0.11481	1	71766	+		20530	20094	11609	11610	25751	25751					0.05693744877339668
KWKQYPKV	8	Unmodified	_KWKQYPKV_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8189697265625	2	538.816202	1075.61785	0.10869	5.8567E-05	2.2758	0.0012263	2.3845	0.0012848	538.8171821735866	13.021	0.59649	12.954	12.819	13.416	-0.067495					57	20	5	0	0	0	0.44389	1	387	387		7.9102	0.62092	1	340740	+		20531	15815	11610	11611	25752	25752					0.08306629956518918
KWKRREEE	8	Unmodified	_KWKRREEE_					0	0	0			REV__UPF3B|p.P455Lfs*3|1|0.09|ENSG00000125351|chrX:119834968-119834969|-/CAAA|frameshift_variant	REV__UPF3B|p.P455Lfs*3|1|0.09|ENSG00000125351|chrX:119834968-119834969|-/CAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8124389648438	2	580.812179	1159.60981	0.10069	5.8482E-05	-0.083513	-4.8505E-05	0.017178	9.9771E-06	580.8120079464519	17.203	0.6314	17.086	16.884	17.515	-0.11739					52	22	3	0	0	0	0.46517	1	1679	1679		0.6015	0.14316	1	223370	+		20532	15259	11611	11612	25753	25753					0.036384509691060885
KWLRSIRKF	9	Unmodified	_KWLRSIRKF_					0	0	0			REV__ENST00000417154.5_1_2:191777940-191778024:+|nuORF	REV__ENST00000417154.5_1_2:191777940-191778024:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	617.8738403320312	2	617.382574	1232.7506	-0.17763	-0.00010966	-1.4572	-0.00089963	-1.6348	-0.0010093	617.3815605701474	65.408	0.40879	65.497	65.323	65.732	0.088882					20	14	2	0	0	0	0.2615	1	16373	16373		4.3292	1.594	1	317780	+		20533	20828	11612	11613	25754	25754					0.1435307441315672
KWLRSIRKF	9	Unmodified	_KWLRSIRKF_					0	0	0			REV__ENST00000417154.5_1_2:191777940-191778024:+|nuORF	REV__ENST00000417154.5_1_2:191777940-191778024:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	617.382574	1232.7506	0.26945	0.00016636	-1.7789	-0.0010982	-1.5094	-0.00093188	617.3810662971911	65.575	0.39397	65.575	65.345	65.739	0	0.044474	4.5449E-05	NaN	4.3292	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243030	+		20534	20828	11612	11613							0.1435307441315672
KWLRSIRKF	9	Unmodified	_KWLRSIRKF_					0	0	0			REV__ENST00000417154.5_1_2:191777940-191778024:+|nuORF	REV__ENST00000417154.5_1_2:191777940-191778024:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	617.382574	1232.7506	0.25026	0.00015451	-2.0416	-0.0012605	-1.7914	-0.001106	617.3812974927399	65.532	0.31963	65.52	65.348	65.668	-0.011337	-0.010813	-0.00027903	NaN	4.3292	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291090	+		20535	20828	11612	11613							0.1435307441315672
KWLRWFLQL	9	Unmodified	_KWLRWFLQL_					0	0	0			REV__ENST00000378809.8_1_12:70194050-70195428:+|nuORF	REV__ENST00000378809.8_1_12:70194050-70195428:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	645.365234375	2	645.3795	1288.74445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.001	1	64.001	63.501	64.501	0								0	0	0	0.21726	1	15884	15884		16.942	3.8998	1		+		20536	20520	11613	11614	25755	25755					0.11162556181648142
KWPKFIKGF	9	Unmodified	_KWPKFIKGF_					0	0	0			REV__ENST00000463428.5_1_1:28696332-28793284:+|nuORF	REV__ENST00000463428.5_1_1:28696332-28793284:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8427734375	2	575.84222	1149.66989	0.27023	0.00015561	0.75572	0.00043518	1.026	0.00059079	575.8424884424037	80.35	2.939	80.323	78.555	81.494	-0.026825					378	116	4	0	0	0	0.34374	1	20412	20412		2.3027	0	1	6160400	+		20537	18919	11614	11615	25756	25756					0.10103793370262792
KWRHMFVIF	9	Unmodified	_KWRHMFVIF_					0	0	0		ENSG00000153822|ENST00000392671|KCNJ16	ENSG00000153822|ENST00000392671|KCNJ16	ENSG00000153822|ENST00000392671|KCNJ16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5703125	3	421.898828	1262.67465	0.01317	5.5563E-06	-0.93201	-0.00039321	-0.91884	-0.00038766	421.8984052925648	16.561	0.6771	16.498	16.266	16.943	-0.062534					67	23	5	0	0	0	0.26127	1	1471	1471		2.7352	2.7352	1	495350			20538	5088	11615	11616	25757	25757					0.0538235424139657
KWWIVAQYMDK	11	Unmodified	_KWWIVAQYMDK_					0	0	0			REV__ENST00000519759.1_1_5:156649807-156665140:+|nuORF	REV__ENST00000519759.1_1_5:156649807-156665140:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.26495361328125	3	489.919957	1466.73804	0.35534	0.00017409	1.6312	0.00079915	1.9865	0.00097324	490.2552527341225	90.532	0.86237	90.532	90.083	90.946	0					90	69	2	0	0	0	0.47713	1	24114	24114		1.1098	0.096179	1	227500	+		20539	20873	11616	11617	25758	25758					0.023342501679508132
KWWVAKSVE	9	Unmodified	_KWWVAKSVE_					0	0	0			REV__ENST00000401408.5_1_2:55455228-55459402:-|nuORF	REV__ENST00000401408.5_1_2:55455228-55459402:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.8106079101562	2	566.811116	1131.60768	0.063911	3.6226E-05	-0.82287	-0.00046641	-0.75896	-0.00043019	566.8104810775502	12.831	0.28307	12.731	12.611	12.894	-0.099291					15	9	2	0	0	0	0.26145	1	272	272		2.0598	0.21551	1	38307	+		20540	20710	11617	11618	25759	25759					0.04714022231269155
KWWVAKSVE	9	Unmodified	_KWWVAKSVE_					0	0	0			REV__ENST00000401408.5_1_2:55455228-55459402:-|nuORF	REV__ENST00000401408.5_1_2:55455228-55459402:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	566.811116	1131.60768	-0.088176	-4.9979E-05	-0.81375	-0.00046124	-0.90193	-0.00051122	566.8109406913816	12.811	0.28324	12.811	12.669	12.952	0	0.039567	3.3949E-06	NaN	2.0598	22	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40767	+		20541	20710	11617	11618							0.04714022231269155
KWYGDLDL	8	Unmodified	_KWYGDLDL_					0	0	0			REV__ENSG00000260314|ENST00000569591|MRC1	REV__ENSG00000260314|ENST00000569591|MRC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.26361083984375	2	505.2531	1008.49165	0.19899	0.00010054	0.82884	0.00041877	1.0278	0.00051931	505.2536708528759	76.318	1.2221	76.318	75.957	77.179	0					111	44	4	0	0	0	0.11736	1	19694	19694		57.471	2.6978	1	3007400	+		20542	19277	11618	11619	25760	25760					-0.01225921339425895
KWYGDLDL	8	Unmodified	_KWYGDLDL_					0	0	0			REV__ENSG00000260314|ENST00000569591|MRC1	REV__ENSG00000260314|ENST00000569591|MRC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2637939453125	2	505.2531	1008.49165	0.38398	0.00019401	0.43628	0.00022043	0.82027	0.00041444	505.2533303318238	76.296	1.1096	76.265	75.881	76.991	-0.031487					115	40	4	0	0	0	0.13277	1	19710	19710		54.774	54.774	1	2936300	+		20543	19277	11618	11619	25761	25761					-0.01225921339425895
KWYIRYHLL	9	Unmodified	_KWYIRYHLL_					0	0	0			REV__ENSG00000081985|ENST00000674203|IL12RB2	REV__ENSG00000081985|ENST00000674203|IL12RB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.3705444335938	2	646.369133	1290.72371	0.080565	5.2075E-05	2.2523	0.0014558	2.3329	0.0015079	646.3704422259191	12.451	0.19445	12.451	12.332	12.526	0					11	5	3	0	0	0	0.35563	1	145	145		0.52476	0.066424	1	51086	+		20544	13912	11619	11620	25762	25762					0.08997965801972896
KWYIRYHLL	9	Unmodified	_KWYIRYHLL_					0	0	0			REV__ENSG00000081985|ENST00000674203|IL12RB2	REV__ENSG00000081985|ENST00000674203|IL12RB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.2971801757812	2	646.369133	1290.72371	0.11257	7.2765E-05	1.9074	0.0012329	2.02	0.0013057	646.3702692699054	12.443	0.22666	12.347	12.236	12.463	-0.096607					14	7	3	0	0	0	0.35563	1	117	117		0.52476	0.066424	1	41260	+		20545	13912	11619	11620	25763	25763					0.08997965801972896
KWYMVLAA	8	Unmodified	_KWYMVLAA_					0	0	0			REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.31927490234375	2	491.264956	980.515359	0.0028514	1.4008E-06	-0.1023	-5.0256E-05	-0.099447	-4.8855E-05	491.26490556983134	13.093	0.27494	13.093	12.925	13.2	0					14	9	2	0	0	0	0.34434	1	302	302		0.79363	0	1	19607	+		20546	14641	11620	11621	25764	25764					0.024322208933767797
KWYQKFLALEE	11	Unmodified	_KWYQKFLALEE_					0	0	0		nc|ENSG00000164221|Q8NEF3|CCDC112;ENSG00000164221|ENST00000379611|CCDC112	nc|ENSG00000164221|Q8NEF3|CCDC112	nc|ENSG00000164221|Q8NEF3|CCDC112	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.5942077636719	3	485.594127	1453.76055	0.20546	9.9771E-05	0.07054	3.4254E-05	0.276	0.00013402	485.59421242917324	24.313	1.035	24.274	23.82	24.855	-0.038927					123	35	5	0	0	0	0.47633	1	3651	3651		1.2148	0	1	580470			20547	5814	11621	11622	25765	25765					0.05182172837226062
KYAADAIAF	9	Unmodified	_KYAADAIAF_					0	0	0			REV__ENSG00000176658|ENST00000318217|MYO1D	REV__ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.2661437988281	2	485.255643	968.496732	0.30243	0.00014675	-2.0433	-0.00099152	-1.7409	-0.00084477	485.254774537468	37.879	0.70901	37.97	37.555	38.264	0.090881					56	25	3	0	0	0	0.10197	1	7751	7751		37.974	0	1	283230	+		20548	17945	11622	11623	25766	25766					0.011223825231695628
KYAALFSQM	9	Oxidation (M)	_KYAALFSQM(Oxidation (M))_		KYAALFSQM(1)		KYAALFSQM(130)	0	0	1		nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B;ENSG00000020577|ENST00000554335|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.768310546875	2	537.76806	1073.52157	0.20437	0.00010991	0.37181	0.00019995	0.57618	0.00030985	537.7681901626698	42.44	0.92138	42.44	42.113	43.034	0					81	33	3	0	0	0	0.00054549	3	9243	9195;9243;9319		128.57	95.787	1	2978500			20549	505	11623	11624	25767;25768;25769	25768		54			-0.01225305665752785
KYAALFSQM	9	Oxidation (M)	_KYAALFSQM(Oxidation (M))_		KYAALFSQM(1)		KYAALFSQM(130)	0	0	1		nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B;ENSG00000020577|ENST00000554335|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.768310546875	2	537.76806	1073.52157	0.46602	0.00025061	-0.21639	-0.00011637	0.24964	0.00013425	537.7679238036592	42.167	1.1505	42.252	41.932	43.083	0.085197					105	41	4	0	0	0	0.0008224	3	9139	9098;9139;9189		125.04	86.862	1	2776900			20550	505	11623	11624	25770;25771;25772	25771		54			-0.01225305665752785
KYAALFSQM	9	Oxidation (M)	_KYAALFSQM(Oxidation (M))_		KYAALFSQM(1)		KYAALFSQM(100)	0	0	1		nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000179134|ENST00000610417|SAMD4B;ENSG00000020577|ENST00000554335|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	nc|ENSG00000020577|Q9UPU9-2|SAMD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.768310546875	2	537.76806	1073.52157	0.62031	0.00033358	-0.22236	-0.00011958	0.39795	0.00021401	537.7679016884804	42.122	1.0134	42.214	41.865	42.879	0.091362					98	35	4	0	0	0	0.0028032	4	9120	9079;9120;9165;9210		103.82	71.038	1	3278900			20551	505	11623	11624	25773;25774;25775;25776	25774		54			-0.01225305665752785
KYADKIYSI	9	Unmodified	_KYADKIYSI_					0	0	0		nc|ENSG00000086205|Q04609-10|FOLH1;nc|ENSG00000086205|Q04609-6|FOLH1;nc|ENSG00000086205|Q04609-3|FOLH1;nc|ENSG00000086205|Q04609-9|FOLH1;nc|ENSG00000086205|Q04609-8|FOLH1;nc|ENSG00000086205|Q04609-7|FOLH1;ENSG00000086205|ENST00000256999|FOLH1	nc|ENSG00000086205|Q04609-10|FOLH1	nc|ENSG00000086205|Q04609-10|FOLH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.8030395507812	2	550.802957	1099.59136	0.59149	0.0003258	-0.39889	-0.00021971	0.1926	0.00010608	550.8026645652284	37.753	1.0938	37.753	37.452	38.546	0					110	38	4	0	0	0	2.2231E-07	3	7815	7765;7815;7900		171.46	85.823	1	4824600			20552	1279	11624	11625	25777;25778;25779	25778					0.045548962744987875
KYADKIYSI	9	Unmodified	_KYADKIYSI_					0	0	0		nc|ENSG00000086205|Q04609-10|FOLH1;nc|ENSG00000086205|Q04609-6|FOLH1;nc|ENSG00000086205|Q04609-3|FOLH1;nc|ENSG00000086205|Q04609-9|FOLH1;nc|ENSG00000086205|Q04609-8|FOLH1;nc|ENSG00000086205|Q04609-7|FOLH1;ENSG00000086205|ENST00000256999|FOLH1	nc|ENSG00000086205|Q04609-10|FOLH1	nc|ENSG00000086205|Q04609-10|FOLH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.8028564453125	2	550.802957	1099.59136	0.49799	0.0002743	-0.30996	-0.00017073	0.18803	0.00010357	550.8027210105676	37.67	1.1492	37.761	37.445	38.594	0.090885					124	41	5	0	0	0	2.2231E-07	2	7771	7726;7771		171.46	85.823	1	4609900			20553	1279	11624	11625	25780;25781	25781					0.045548962744987875
KYADKIYSI	9	Unmodified	_KYADKIYSI_					0	0	0		nc|ENSG00000086205|Q04609-10|FOLH1;nc|ENSG00000086205|Q04609-6|FOLH1;nc|ENSG00000086205|Q04609-3|FOLH1;nc|ENSG00000086205|Q04609-9|FOLH1;nc|ENSG00000086205|Q04609-8|FOLH1;nc|ENSG00000086205|Q04609-7|FOLH1;ENSG00000086205|ENST00000256999|FOLH1	nc|ENSG00000086205|Q04609-10|FOLH1	nc|ENSG00000086205|Q04609-10|FOLH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.8028564453125	2	550.802957	1099.59136	0.39305	0.0002165	-0.12778	-7.0382E-05	0.26527	0.00014611	550.8028041356	37.614	1.1496	37.709	37.365	38.515	0.0952					128	41	5	0	0	0	4.216E-07	2	7714	7714;7762		163.69	84.959	1	4604600			20554	1279	11624	11625	25782;25783	25782					0.045548962744987875
KYADLSHNRL	10	Unmodified	_KYADLSHNRL_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.9034423828125	3	406.219283	1215.63602	-0.21869	-8.8838E-05	0.82754	0.00033616	0.60885	0.00024733	406.2193739359684	25.606	0.86442	25.606	25.296	26.161	0					76	29	5	0	0	0	0.31569	1	4069	4069		14.171	2.5394	1	640770			20555	2519	11625	11626	25784	25784					0.03682720140568563
KYADLSHNRL	10	Unmodified	_KYADLSHNRL_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.21917724609375	3	406.219283	1215.63602	-0.35575	-0.00014451	0.86769	0.00035247	0.51194	0.00020796	406.21947234827695	25.638	0.87973	25.582	25.281	26.161	-0.055931					64	30	4	0	0	0	0.28248	1	4144	4144		26.121	6.134	1	824590			20556	2519	11625	11626	25785	25785					0.03682720140568563
KYADLSHNRL	10	Unmodified	_KYADLSHNRL_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.21917724609375	3	406.219283	1215.63602	-0.29522	-0.00011992	0.88384	0.00035903	0.58862	0.00023911	406.21942893127454	25.682	0.6133	25.66	25.356	25.97	-0.022238					66	21	5	0	0	0	0.18244	1	4143	4143		34.79	11.775	1	708330			20557	2519	11625	11626	25786	25786					0.03682720140568563
KYADYFLEV	9	Unmodified	_KYADYFLEV_					0	0	0		nc|ENSG00000107443|Q5T5M9-2|CCNJ;nc|ENSG00000107443|Q5T5M9|CCNJ;ENSG00000107443|ENST00000465148|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.2862548828125	2	574.28714	1146.55973	0.44378	0.00025485	-0.66116	-0.0003797	-0.21739	-0.00012484	574.2866869135141	63.851	0.47969	63.842	63.622	64.101	-0.0095291					25	16	2	0	0	0	0.1426	1	15832	15832		32.037	8.8891	1	208970			20558	2126	11626	11627	25787	25787					-0.007690964794619504
KYADYFLEV	9	Unmodified	_KYADYFLEV_					0	0	0		nc|ENSG00000107443|Q5T5M9-2|CCNJ;nc|ENSG00000107443|Q5T5M9|CCNJ;ENSG00000107443|ENST00000465148|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	574.28714	1146.55973	0.38959	0.00022374	-0.86522	-0.00049688	-0.47563	-0.00027315	574.2869686472995	63.814	0.39043	63.814	63.635	64.026	0	-0.0031787	-0.0001787	NaN	32.037	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122270			20559	2126	11626	11627							-0.007690964794619504
KYADYFLEV	9	Unmodified	_KYADYFLEV_					0	0	0		nc|ENSG00000107443|Q5T5M9-2|CCNJ;nc|ENSG00000107443|Q5T5M9|CCNJ;ENSG00000107443|ENST00000465148|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	nc|ENSG00000107443|Q5T5M9-2|CCNJ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	574.28714	1146.55973	0.48783	0.00028015	-0.52477	-0.00030137	-0.03694	-2.1214E-05	574.2866573381641	63.699	0.39257	63.795	63.65	64.043	0.095722	-0.021854	0.00021233	NaN	32.037	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186870			20560	2126	11626	11627							-0.007690964794619504
KYAGLQPYL	9	Unmodified	_KYAGLQPYL_					0	0	0		ENSG00000196072|ENST00000370372|BLOC1S2;nc|ENSG00000196072|Q6QNY1-2|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3193359375	2	526.792392	1051.57023	0.65097	0.00034293	-1.5418	-0.00081218	-0.89078	-0.00046926	526.7922885699293	50.943	0.69281	50.99	50.604	51.296	0.046574					53	25	3	0	0	0	0.09064	1	11864	11864		56.177	10.156	1	484690			20561	7818	11627	11628	25788	25788					0.0465093096563578
KYAGLQPYL	9	Unmodified	_KYAGLQPYL_					0	0	0		ENSG00000196072|ENST00000370372|BLOC1S2;nc|ENSG00000196072|Q6QNY1-2|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3195190429688	2	526.792392	1051.57023	0.73324	0.00038626	-1.4883	-0.00078402	-0.75505	-0.00039776	526.7928266796766	51.03	0.61831	51.039	50.729	51.347	0.0095673					68	23	4	0	0	0	0.1854	1	11879	11879		32.305	10.559	1	550360			20562	7818	11627	11628	25789	25789					0.0465093096563578
KYAHMINGF	9	Oxidation (M)	_KYAHM(Oxidation (M))INGF_		KYAHM(1)INGF		KYAHM(150)INGF	0	0	1		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7658081054688	2	548.765852	1095.51715	0.28447	0.0001561	1.0902	0.00059825	1.3746	0.00075436	548.7656163180189	28.578	0.99602	28.578	28.277	29.273	0					102	35	5	0	0	0	4.3382E-05	1	4973	4973		149.99	115.59	1	906920			20563	575	11628	11629	25790	25790		64			-0.026787700886643506
KYAHMINGF	9	Oxidation (M)	_KYAHM(Oxidation (M))INGF_		KYAHM(1)INGF		KYAHM(150)INGF	0	0	1		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7656860351562	2	548.765852	1095.51715	0.36614	0.00020092	0.93363	0.00051234	1.2998	0.00071327	548.7657837924895	28.619	0.62417	28.615	28.333	28.957	-0.0042572					85	21	5	0	0	0	4.3382E-05	2	4984	4984;5031		149.99	115.59	1	1179400			20564	575	11628	11629	25791;25792	25791		64			-0.026787700886643506
KYAHMINGF	9	Oxidation (M)	_KYAHM(Oxidation (M))INGF_		KYAHM(1)INGF		KYAHM(150)INGF	0	0	1		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7657470703125	2	548.765852	1095.51715	0.23199	0.00012731	1.0075	0.00055288	1.2395	0.00068019	548.7656654313503	28.553	0.93936	28.553	28.322	29.261	0.0004673					88	33	4	0	0	0	4.3382E-05	2	4968	4968;5013		149.99	108.15	1	1008500			20565	575	11628	11629	25793;25794	25793		64			-0.026787700886643506
KYAKIPAN	8	Unmodified	_KYAKIPAN_					0	0	0		ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.7659606933594	2	452.766178	903.517802	-0.19092	-8.6442E-05	0.12623	5.715E-05	-0.064694	-2.9291E-05	452.7661625716791	39.304	0.90709	39.304	38.844	39.751	0					63	32	3	0	0	0	0.23581	1	8245	8245		38.151	2.107	1	813400			20566	3399	11629	11630	25795	25795					0.062183926226907715
KYALELQKL	9	Unmodified	_KYALELQKL_					0	0	0		ENST00000539907.5_1_1:21835973-21889628:+|nuORF;ENSG00000162551|ENST00000374840|ALPL	ENST00000539907.5_1_1:21835973-21889628:+|nuORF	ENST00000539907.5_1_1:21835973-21889628:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8088989257812	2	553.334424	1104.6543	0.61753	0.0003417	-1.6889	-0.00093455	-1.0714	-0.00059284	553.3339507684951	45.575	0.87236	45.575	45.015	45.888	0					60	31	3	0	0	0	0.24727	1	10174	10174		16.566	6.4919	1	409360			20567	5581	11630	11631	25796	25796					0.10615462062560255
KYALELQKL	9	Unmodified	_KYALELQKL_					0	0	0		ENST00000539907.5_1_1:21835973-21889628:+|nuORF;ENSG00000162551|ENST00000374840|ALPL	ENST00000539907.5_1_1:21835973-21889628:+|nuORF	ENST00000539907.5_1_1:21835973-21889628:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8090209960938	2	553.334424	1104.6543	0.60362	0.000334	-1.8504	-0.0010239	-1.2468	-0.00068991	553.3338978672704	45.282	0.76161	45.344	44.888	45.649	0.061886					52	26	4	0	0	0	0.23216	1	10051	10051		22.658	7.4096	1	482810			20568	5581	11630	11631	25797	25797					0.10615462062560255
KYALLLQEL	9	Unmodified	_KYALLLQEL_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.82958984375	2	545.828975	1089.6434	0.43634	0.00023817	1.0504	0.00057336	1.4868	0.00081153	545.8294948531116	67.4	0.65049	67.4	67.106	67.757	0					57	22	3	0	0	0	0.0048951	2	16930	16930;16946		87.258	22.331	1	923580			20569	7829	11631	11632	25798;25799	25798					0.10216059688264068
KYALLLQEL	9	Unmodified	_KYALLLQEL_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.82958984375	2	545.828975	1089.6434	0.54622	0.00029814	0.98374	0.00053695	1.53	0.00083509	545.8294595833769	67.235	0.58923	67.313	67.068	67.657	0.078041					50	20	3	0	0	0	0.0048951	2	16867	16867;16909		87.258	22.331	1	1080100			20570	7829	11631	11632	25800;25801	25800					0.10216059688264068
KYALLLQEL	9	Unmodified	_KYALLLQEL_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8296508789062	2	545.828975	1089.6434	0.44625	0.00024358	1.2165	0.000664	1.6628	0.00090758	545.8296275047206	67.36	0.67095	67.343	67.086	67.757	-0.016296					51	22	3	0	0	0	0.011436	1	16915	16915		90.135	16.939	1	1063600			20571	7829	11631	11632	25802	25802					0.10216059688264068
KYAMMFAEL	9	2 Oxidation (M)	_KYAM(Oxidation (M))M(Oxidation (M))FAEL_		KYAM(1)M(1)FAEL		KYAM(100)M(100)FAEL	0	0	2		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2615966796875	2	568.261753	1134.50895	0.062777	3.5674E-05	-0.38829	-0.00022065	-0.32551	-0.00018498	568.261606316977	46.391	1.4106	46.391	45.917	47.328	0					138	50	4	0	0	0	0.0028626	3	10402	10353;10402;10451		103.35	68.952	1	6774600			20572	1286	11632	11633	25803;25804;25805	25804		155;156			-0.05292085120277079
KYAMMFAEL	9	2 Oxidation (M)	_KYAM(Oxidation (M))M(Oxidation (M))FAEL_		KYAM(1)M(1)FAEL		KYAM(93)M(93)FAEL	0	0	2		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2620239257812	2	568.261753	1134.50895	0.19532	0.000111	-0.4921	-0.00027964	-0.29678	-0.00016865	568.2616158694462	46.198	1.5231	46.258	45.703	47.226	0.059834					152	55	5	0	0	0	0.0042138	3	10318	10268;10318;10371		92.653	60.536	1	7204700			20573	1286	11632	11633	25806;25807;25808	25807		155;156			-0.05292085120277079
KYAMMFAEL	9	2 Oxidation (M)	_KYAM(Oxidation (M))M(Oxidation (M))FAEL_		KYAM(1)M(1)FAEL		KYAM(96)M(96)FAEL	0	0	2		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.261962890625	2	568.261753	1134.50895	0.27326	0.00015529	-0.50118	-0.0002848	-0.22792	-0.00012952	568.2615714697977	46.218	1.3768	46.283	45.727	47.104	0.065048					148	48	5	0	0	0	0.0037772	3	10326	10274;10326;10375		96.111	59.984	1	7214800			20574	1286	11632	11633	25809;25810;25811	25810		155;156			-0.05292085120277079
KYAPRFNGF	9	Unmodified	_KYAPRFNGF_					0	0	0		ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2879638671875	2	550.287808	1098.56106	0.091339	5.0263E-05	-0.31934	-0.00017573	-0.228	-0.00012547	550.2878357378559	38.598	0.8956	38.598	38.239	39.135	0					119	31	5	0	0	0	0.0032391	4	8075	8028;8075;8121;8189		100.37	67.423	1	2984100			20575	6482	11633	11634	25812;25813;25814;25815	25813					0.015725823999900967
KYAPRFNGF	9	Unmodified	_KYAPRFNGF_					0	0	0		ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2879638671875	2	550.287808	1098.56106	0.48211	0.0002653	-0.89157	-0.00049062	-0.40946	-0.00022532	550.2876509122199	38.542	0.92101	38.633	38.183	39.104	0.090881					114	33	6	0	0	0	0.0017972	3	8055	8006;8055;8099		112.59	68.735	1	3214500			20576	6482	11633	11634	25816;25817;25818	25817					0.015725823999900967
KYAPRFNGF	9	Unmodified	_KYAPRFNGF_					0	0	0		ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2879638671875	2	550.287808	1098.56106	0.51249	0.00028202	-0.79619	-0.00043813	-0.28369	-0.00015611	550.2876074371104	38.531	0.89603	38.628	38.202	39.098	0.097527					122	31	6	0	0	0	0.00077644	3	8030	7987;8030;8073		125.62	81.766	1	2749000			20577	6482	11633	11634	25819;25820;25821	25820					0.015725823999900967
KYAQLYSNL	9	Unmodified	_KYAQLYSNL_					0	0	0		nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000515773.5_1_6:43164260-43192180:+|nuORF	nc|ENSG00000112659|Q8IWT3-3|CUL9	nc|ENSG00000112659|Q8IWT3-3|CUL9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7774047851562	2	550.292756	1098.57096	0.688	0.0003786	-1.8621	-0.0010247	-1.1741	-0.00064612	550.2923015935676	45.573	0.43443	45.573	45.341	45.776	0					25	15	2	0	0	0	0.22143	1	10226	10226		19.362	0.10495	1	249440			20578	2449	11634	11635	25822	25822					0.025617256147143053
KYAQLYSNL	9	Unmodified	_KYAQLYSNL_					0	0	0		nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000515773.5_1_6:43164260-43192180:+|nuORF	nc|ENSG00000112659|Q8IWT3-3|CUL9	nc|ENSG00000112659|Q8IWT3-3|CUL9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7769165039062	2	550.292756	1098.57096	0.69332	0.00038153	-3.5409	-0.0019486	-2.8476	-0.001567	550.2920743297449	45.243	0.42201	45.312	45.123	45.545	0.068569					33	14	3	0	0	0	0.21026	1	10095	10095		28.495	11.382	1	234930			20579	2449	11634	11635	25823	25823					0.025617256147143053
KYAQLYSNL	9	Unmodified	_KYAQLYSNL_					0	0	0		nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000515773.5_1_6:43164260-43192180:+|nuORF	nc|ENSG00000112659|Q8IWT3-3|CUL9	nc|ENSG00000112659|Q8IWT3-3|CUL9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7772216796875	2	550.292756	1098.57096	0.52248	0.00028751	-3.4153	-0.0018794	-2.8928	-0.0015919	550.2919246060101	45.25	0.45123	45.315	45.119	45.57	0.065048					27	16	2	0	0	0	0.20881	1	10140	10140		21.537	9.2963	1	244950			20580	2449	11634	11635	25824	25824					0.025617256147143053
KYARVVQKL	9	Unmodified	_KYARVVQKL_					0	0	0		nc|ENSG00000112592|P20226-2|TBP;ENSG00000112592|ENST00000392092|TBP;ENSG00000182521|ENST00000247219|TBPL2	nc|ENSG00000112592|P20226-2|TBP	nc|ENSG00000112592|P20226-2|TBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.847900390625	2	552.848033	1103.68151	0.43006	0.00023776	-0.064877	-3.5867E-05	0.36519	0.00020189	552.8478679052715	21.874	0.38627	21.773	21.557	21.943	-0.10034					22	13	2	0	0	0	0.22188	1	2962	2962		20.454	4.6064	1	62411			20581	2444	11635	11636	25825	25825					0.13381990393600063
KYARVVQKL	9	Unmodified	_KYARVVQKL_					0	0	0		nc|ENSG00000112592|P20226-2|TBP;ENSG00000112592|ENST00000392092|TBP;ENSG00000182521|ENST00000247219|TBPL2	nc|ENSG00000112592|P20226-2|TBP	nc|ENSG00000112592|P20226-2|TBP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	552.848033	1103.68151	0.34305	0.00018966	-0.11393	-6.2988E-05	0.22912	0.00012667	552.8478100878696	21.732	0.47924	21.732	21.487	21.966	0	-0.016978	8.8315E-06	NaN	20.454	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52467			20582	2444	11635	11636							0.13381990393600063
KYARVVQKL	9	Unmodified	_KYARVVQKL_					0	0	0		nc|ENSG00000112592|P20226-2|TBP;ENSG00000112592|ENST00000392092|TBP;ENSG00000182521|ENST00000247219|TBPL2	nc|ENSG00000112592|P20226-2|TBP	nc|ENSG00000112592|P20226-2|TBP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	552.848033	1103.68151	0.25818	0.00014274	-0.18183	-0.00010053	0.076353	4.2212E-05	552.847805636285	21.791	0.37341	21.741	21.574	21.948	-0.049377	-0.0075509	-6.6243E-05	NaN	20.454	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95233			20583	2444	11635	11636							0.13381990393600063
KYAWAMFL	8	Unmodified	_KYAWAMFL_					0	0	0		nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000597145.5_1_19:4685559-4714096:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9	nc|ENSG00000142002|Q86TI2|DPP9	nc|ENSG00000142002|Q86TI2|DPP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.775634765625	2	515.264956	1028.51536	0.3286	0.00016932	0.27562	0.00014202	0.60422	0.00031133	515.2648033676636	21.604	0.64879	21.604	21.368	22.017	0					50	23	3	0	0	0	0.344	1	3013	3013		2.5775	0	1	125780			20584	4419	11636	11637	25826	25826					0.002242208933694201
KYAYKAEP	8	Unmodified	_KYAYKAEP_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2660827636719	2	485.255643	968.496732	0.26843	0.00013026	-1.8459	-0.00089575	-1.5775	-0.00076549	485.254761418355	37.655	0.81752	37.753	37.477	38.294	0.097527					48	29	2	0	0	0	0.28696	1	7746	7746		32.305	0	1	350980			20585	1324	11637	11638	25827	25827					0.011223825231695628
KYDDDTLTQF	10	Unmodified	_KYDDDTLTQF_					0	0	0			REV__nc|ENSG00000154928|P54762-5|EPHB1	REV__nc|ENSG00000154928|P54762-5|EPHB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.1827697753906	3	415.859309	1244.5561	-0.052161	-2.1692E-05	-2.3755	-0.00098789	-2.4277	-0.0010096	415.85856250713397	24.731	0.35343	24.731	24.605	24.958	0					13	11	2	0	0	0	0.31691	1	3866	3866		5.4027	0.5057	1	32579	+		20586	16684	11638	11639	25828	25828					-0.05639811043965892
KYDEGLYRF	9	Unmodified	_KYDEGLYRF_					0	0	0		ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.7958374023438	2	595.795663	1189.57677	0.325	0.00019363	-0.26095	-0.00015547	0.064047	3.8159E-05	595.795734887418	43.015	1.1244	43.106	42.853	43.977	0.091362					79	41	4	0	0	0	0.0091837	1	9399	9399		80.676	52.182	1	843970			20587	8162	11639	11640	25829	25829					-0.010431758736331176
KYDEIFYNL	9	Unmodified	_KYDEIFYNL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.799072265625	2	602.797872	1203.58119	0.68729	0.0004143	-0.21011	-0.00012665	0.47719	0.00028765	602.7983746418417	64.413	2.7199	64.413	64.105	66.825	0					283	98	6	0	0	0	5.3912E-07	9	16028	15977;15986;16028;16070;16120;16169;16224;16281;16334		159.1	79.505	1	40797000			20588	530	11640	11641	25830;25831;25832;25833;25834;25835;25836;25837;25838	25832					-0.012457114507014921
KYDEIFYNL	9	Unmodified	_KYDEIFYNL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.7991333007812	2	602.797872	1203.58119	0.6579	0.00039658	-0.25984	-0.00015663	0.39806	0.00023995	602.798346868557	64.315	2.7694	64.408	64.116	66.886	0.09288					305	101	6	0	0	0	8.0996E-05	8	15988	15931;15946;15988;16032;16082;16133;16183;16244		143.91	71.792	1	40345000			20589	530	11640	11641	25839;25840;25841;25842;25843;25844;25845;25846	25841					-0.012457114507014921
KYDEIFYNL	9	Unmodified	_KYDEIFYNL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.7979736328125	2	602.797872	1203.58119	0.52211	0.00031473	-0.0049091	-2.9592E-06	0.5172	0.00031177	602.7986559521053	64.452	2.2812	64.443	64.128	66.41	-0.0095291					276	83	7	0	0	0	6.0404E-05	8	16111	15975;16024;16066;16111;16164;16212;16263;16490		147.24	93.837	1	45358000			20590	530	11640	11641	25847;25848;25849;25850;25851;25852;25853;25854	25850					-0.012457114507014921
KYDNISRIQ	9	Unmodified	_KYDNISRIQ_					0	0	0		ENSG00000136169|ENST00000611815|SETDB2;nc|ENSG00000136169|Q96T68-3|SETDB2;nc|ENSG00000136169|Q96T68|SETDB2	ENSG00000136169|ENST00000611815|SETDB2	ENSG00000136169|ENST00000611815|SETDB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.8450317382812	2	568.806562	1135.59857	0.12344	7.0211E-05	1.439	0.00081851	1.5624	0.00088872	568.8072250223163	33.918	0.1953	33.985	33.852	34.047	0.0667					8	6	2	0	0	0	0.20651	1	6632	6632		26.884	11.036	1	55652			20591	3951	11641	11642	25855	25855					0.03619628874935188
KYDNMAELF	9	Oxidation (M)	_KYDNM(Oxidation (M))AELF_		KYDNM(1)AELF		KYDNM(76)AELF	0	0	1		ENST00000527797.6_1_8:145651064-145652328:-|nuORF;ENSG00000160948|ENST00000292510|VPS28;nc|ENSG00000160948|Q9UK41-2|VPS28;ENST00000528142.5_1_8:145649272-145651551:-|nuORF	ENST00000527797.6_1_8:145651064-145652328:-|nuORF	ENST00000527797.6_1_8:145651064-145652328:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.7608032226562	2	573.760432	1145.50631	0.37614	0.00021582	-1.2011	-0.00068916	-0.82498	-0.00047334	573.7593932675896	45.086	1.1777	45.086	44.739	45.917	0					103	41	4	0	0	0	0.01251	2	10049	10001;10049		75.571	41.169	1	3076600			20592	5499	11642	11643	25856;25857	25857		663			-0.06062217253634117
KYDNMAELF	9	Oxidation (M)	_KYDNM(Oxidation (M))AELF_		KYDNM(1)AELF		KYDNM(63)AELF	0	0	1		ENST00000527797.6_1_8:145651064-145652328:-|nuORF;ENSG00000160948|ENST00000292510|VPS28;nc|ENSG00000160948|Q9UK41-2|VPS28;ENST00000528142.5_1_8:145649272-145651551:-|nuORF	ENST00000527797.6_1_8:145651064-145652328:-|nuORF	ENST00000527797.6_1_8:145651064-145652328:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.7605590820312	2	573.760432	1145.50631	0.45052	0.00025849	-0.18549	-0.00010642	0.26503	0.00015207	573.760392682008	44.766	0.66436	44.834	44.54	45.204	0.068573					73	23	5	0	0	0	0.022205	2	9971	9920;9971		63.227	28.826	1	3242100			20593	5499	11642	11643	25858;25859	25859		663			-0.06062217253634117
KYDNMAELF	9	Oxidation (M)	_KYDNM(Oxidation (M))AELF_		KYDNM(1)AELF		KYDNM(76)AELF	0	0	1		ENST00000527797.6_1_8:145651064-145652328:-|nuORF;ENSG00000160948|ENST00000292510|VPS28;nc|ENSG00000160948|Q9UK41-2|VPS28;ENST00000528142.5_1_8:145649272-145651551:-|nuORF	ENST00000527797.6_1_8:145651064-145652328:-|nuORF	ENST00000527797.6_1_8:145651064-145652328:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.7607421875	2	573.760432	1145.50631	0.42509	0.0002439	-0.068919	-3.9543E-05	0.35617	0.00020436	573.760402341699	44.784	0.67986	44.859	44.449	45.129	0.075047					85	24	5	0	0	0	0.01251	2	9949	9903;9949		75.571	33.731	1	3164300			20594	5499	11642	11643	25860;25861	25861		663			-0.06062217253634117
KYDPNVYSI	9	Unmodified	_KYDPNVYSI_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.77734375	2	549.776939	1097.53933	0.51476	0.000283	0.12009	6.6022E-05	0.63484	0.00034902	549.7769839491503	45.188	1.4688	45.188	44.881	46.35	0					166	53	5	0	0	0	1.3973E-05	3	10081	10035;10081;10123		154.75	81.785	1	10836000			20595	4153	11643	11644	25862;25863;25864	25863					-0.005542671392504417
KYDPNVYSI	9	Unmodified	_KYDPNVYSI_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.77734375	2	549.776939	1097.53933	0.55265	0.00030383	0.016653	9.1554E-06	0.5693	0.00031299	549.7769574547046	44.913	1.5335	44.982	44.711	46.245	0.068573					155	54	5	0	0	0	1.3973E-05	4	9995	9951;9995;10042;10095		154.75	81.785	1	12751000			20596	4153	11643	11644	25865;25866;25867;25868	25866					-0.005542671392504417
KYDPNVYSI	9	Unmodified	_KYDPNVYSI_					0	0	0		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7772827148438	2	549.776939	1097.53933	0.59512	0.00032718	-0.020867	-1.1472E-05	0.57425	0.00031571	549.776913330394	44.925	1.4337	45.001	44.723	46.156	0.075047					158	52	5	0	0	0	3.4202E-05	4	9990	9947;9990;10034;10083		151.48	78.512	1	12298000			20597	4153	11643	11644	25869;25870;25871;25872	25870					-0.005542671392504417
KYDTDFYIL	9	Unmodified	_KYDTDFYIL_					0	0	0		ENST00000489964.5_1_2:136664888-136672125:-|nuORF;nc|ENSG00000115866|P14868-2|DARS1;ENSG00000115866|ENST00000264161|DARS1	ENST00000489964.5_1_2:136664888-136672125:-|nuORF	ENST00000489964.5_1_2:136664888-136672125:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.29248046875	2	589.292422	1176.57029	0.4665	0.0002749	-0.34904	-0.00020569	0.11746	6.9219E-05	589.2920445942815	66.618	0.6478	66.618	66.317	66.964	0					64	22	4	0	0	0	0.11201	2	16663	16663;16715		36.506	9.6225	1	1379100			20598	2685	11644	11645	25873;25874	25873					-0.01093113825004366
KYDTDFYIL	9	Unmodified	_KYDTDFYIL_					0	0	0		ENST00000489964.5_1_2:136664888-136672125:-|nuORF;nc|ENSG00000115866|P14868-2|DARS1;ENSG00000115866|ENST00000264161|DARS1	ENST00000489964.5_1_2:136664888-136672125:-|nuORF	ENST00000489964.5_1_2:136664888-136672125:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.2922973632812	2	589.292422	1176.57029	0.38876	0.00022909	-0.45126	-0.00026592	-0.062505	-3.6834E-05	589.2919812100677	66.496	0.63037	66.58	66.274	66.905	0.083832					70	22	4	0	0	0	0.07944	2	16614	16614;16665		41.956	13.782	1	1306500			20599	2685	11644	11645	25875;25876	25875					-0.01093113825004366
KYDTDFYIL	9	Unmodified	_KYDTDFYIL_					0	0	0		ENST00000489964.5_1_2:136664888-136672125:-|nuORF;nc|ENSG00000115866|P14868-2|DARS1;ENSG00000115866|ENST00000264161|DARS1	ENST00000489964.5_1_2:136664888-136672125:-|nuORF	ENST00000489964.5_1_2:136664888-136672125:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.292236328125	2	589.292422	1176.57029	0.28129	0.00016576	-0.16128	-9.5044E-05	0.12001	7.072E-05	589.2921646602581	66.6	0.81544	66.587	66.303	67.118	-0.013588					72	29	4	0	0	0	0.07944	2	16647	16647;16696		41.956	12.874	1	1302800			20600	2685	11644	11645	25877;25878	25877					-0.01093113825004366
KYDVLFALF	9	Unmodified	_KYDVLFALF_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.K640Ifs*22|1|0.06|ENSG00000139687|chr13:48456307-48456308|-/TACATCTTGTCTATTTAATTGGTATTAT|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3109741210938	2	558.310418	1114.60628	0.43023	0.0002402	-0.61753	-0.00034477	-0.1873	-0.00010457	558.3100179844467	86.139	0.60583	86.13	85.873	86.479	-0.0090103					58	23	3	0	0	0	0.13748	1	22659	22659		32.786	2.1491	1	216390			20601	4258;11531	11645	11646	25879	25879					0.05356388142513424
KYDWSSPLS	9	Unmodified	_KYDWSSPLS_					0	0	0			REV__ENST00000547804.1_1_12:30949133-30951205:+|nuORF	REV__ENST00000547804.1_1_12:30949133-30951205:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3341674804688	2	541.761289	1081.50803	-0.42294	-0.00022913	-0.025624	-1.3882E-05	-0.44856	-0.00024301	541.7611066255945	34.852	0.66419	34.93	34.644	35.308	0.077381					37	23	2	0	0	0	0.25622	1	6866	6866		7.2892	2.0586	1	111050	+		20602	22184	11646	11647	25880	25880					-0.02946840173331111
KYEDLWVHV	9	Unmodified	_KYEDLWVHV_					0	0	0			REV__ENSG00000106648|ENST00000392800|GALNTL5	REV__ENSG00000106648|ENST00000392800|GALNTL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8064575195312	2	594.806031	1187.59751	0.83163	0.00049466	-0.17076	-0.00010157	0.66087	0.00039309	594.8059610927523	36.427	0.38074	36.513	36.3	36.68	0.08625					23	12	3	0	0	0	0.28128	1	7410	7410		11.64	0	1	265860	+		20603	14530	11647	11648	25881	25881					0.011214145060193914
KYEDLWVHV	9	Unmodified	_KYEDLWVHV_					0	0	0			REV__ENSG00000106648|ENST00000392800|GALNTL5	REV__ENSG00000106648|ENST00000392800|GALNTL5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	594.806031	1187.59751	0.56527	0.00033623	-0.042366	-2.5199E-05	0.52291	0.00031103	594.8061406497527	36.565	0.42934	36.565	36.385	36.815	0	0.041658	0.00017067	NaN	11.64	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181860	+		20604	14530	11647	11648							0.011214145060193914
KYEDLWVHV	9	Unmodified	_KYEDLWVHV_					0	0	0			REV__ENSG00000106648|ENST00000392800|GALNTL5	REV__ENSG00000106648|ENST00000392800|GALNTL5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	594.806031	1187.59751	0.61948	0.00036847	-0.28284	-0.00016824	0.33664	0.00020024	594.8059905488634	36.409	0.42129	36.491	36.308	36.729	0.082359	-0.031748	-0.0001154	NaN	11.64	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185360	+		20605	14530	11647	11648							0.011214145060193914
KYEELFPAF	9	Unmodified	_KYEELFPAF_					0	0	0		ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2911987304688	2	572.289682	1142.56481	0.2366	0.0001354	-0.16579	-9.4879E-05	0.070813	4.0526E-05	572.2905251099427	68.227	1.7835	68.227	67.783	69.566	0					229	64	6	0	0	0	0.00045155	7	17180	17125;17134;17180;17228;17271;17322;17374		129.77	77.504	1	67607000			20606	1977	11648	11649	25882;25883;25884;25885;25886;25887;25888	25884					-0.0007679261682369543
KYEELFPAF	9	Unmodified	_KYEELFPAF_					0	0	0		ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2899169921875	2	572.289682	1142.56481	0.34095	0.00019512	-0.34346	-0.00019656	-0.0025124	-1.4378E-06	572.2904168487622	68.179	1.8456	68.251	67.708	69.554	0.071938					232	66	6	0	0	0	0.00045155	9	17218	17086;17107;17157;17167;17218;17269;17311;17358;17407		129.77	68.415	1	60362000			20607	1977	11648	11649	25889;25890;25891;25892;25893;25894;25895;25896;25897	25893					-0.0007679261682369543
KYEELFPAF	9	Unmodified	_KYEELFPAF_					0	0	0		ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.289306640625	2	572.289682	1142.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.904	1	72.958	72.458	73.458	0.053833								0	0	0	0.19534	1	18600	18600		24.021	5.8742	1				20608	1977	11648	11649	25898	25898					-0.0007679261682369543
KYEELFPAF	9	Unmodified	_KYEELFPAF_					0	0	0		ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2910766601562	2	572.289682	1142.56481	0.30673	0.00017554	-0.27244	-0.00015592	0.034291	1.9624E-05	572.2904104442096	68.287	1.8976	68.268	67.697	69.594	-0.019157					232	67	6	0	0	0	9.2305E-05	9	17174	17117;17127;17174;17178;17218;17266;17315;17364;17413		142.08	80.722	1	71764000			20609	1977	11648	11649	25899;25900;25901;25902;25903;25904;25905;25906;25907	25901					-0.0007679261682369543
KYEELFPAF	9	Unmodified	_KYEELFPAF_					0	0	0		ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2900390625	2	572.289682	1142.56481	0.23473	0.00013434	0.70974	0.00040618	0.94448	0.00054051	572.2897709924225	69.979	1.1553	69.956	69.591	70.747	-0.022079					112	41	3	0	0	0	0.12279	1	17778	17778		34.932	4.7073	1	1015800			20610	1977	11648	11649	25908	25908					-0.0007679261682369543
KYEELFPAF	9	Unmodified	_KYEELFPAF_					0	0	0		ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2898559570312	2	572.289682	1142.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.222	1	71.197	70.697	71.697	-0.024872								0	0	0	0.19013	1	18080	18080		25.399	0.72543	1				20611	1977	11648	11649	25909	25909					-0.0007679261682369543
KYEELFPAF	9	Unmodified	_KYEELFPAF_					0	0	0		ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2897338867188	2	572.289682	1142.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.749	1	72.719	72.219	73.219	-0.029305								0	0	0	0.17427	1	18545	18545		29.082	5.9332	1				20612	1977	11648	11649	25910	25910					-0.0007679261682369543
KYEELYCFS	9	Unmodified	_KYEELYCFS_					0	0	0		ENSG00000003987|ENST00000180173|MTMR7;nc|ENSG00000003987|Q9Y216-2|MTMR7;MTMR7|p.K393Nfs*5|1|0.19|ENSG00000003987|chr8:17305923-17305930|AGATTTCT/-|frameshift_variant	ENSG00000003987|ENST00000180173|MTMR7	ENSG00000003987|ENST00000180173|MTMR7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.2633056640625	2	591.262807	1180.51106	0.40066	0.0002369	0.69335	0.00040995	1.094	0.00064685	591.2634091223539	68.32	0.4138	68.32	68.022	68.436	0					26	15	2	0	0	0	0.20626	1	17193	17193		22.736	6.5872	1	331800			20613	304	11649	11650	25911	25911					-0.07197333110866566
KYEELYCFS	9	Unmodified	_KYEELYCFS_					0	0	0		ENSG00000003987|ENST00000180173|MTMR7;nc|ENSG00000003987|Q9Y216-2|MTMR7;MTMR7|p.K393Nfs*5|1|0.19|ENSG00000003987|chr8:17305923-17305930|AGATTTCT/-|frameshift_variant	ENSG00000003987|ENST00000180173|MTMR7	ENSG00000003987|ENST00000180173|MTMR7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.262939453125	2	591.262807	1180.51106	0.36794	0.00021755	0.86564	0.00051182	1.2336	0.00072937	591.2634271380768	68.179	0.46555	68.251	67.994	68.459	0.071938					25	16	2	0	0	0	0.18803	1	17154	17154		25.399	4.9457	1	244590			20614	304	11649	11650	25912	25912					-0.07197333110866566
KYEELYCFS	9	Unmodified	_KYEELYCFS_					0	0	0		ENSG00000003987|ENST00000180173|MTMR7;nc|ENSG00000003987|Q9Y216-2|MTMR7;MTMR7|p.K393Nfs*5|1|0.19|ENSG00000003987|chr8:17305923-17305930|AGATTTCT/-|frameshift_variant	ENSG00000003987|ENST00000180173|MTMR7	ENSG00000003987|ENST00000180173|MTMR7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.2634887695312	2	591.262807	1180.51106	0.44847	0.00026516	0.36462	0.00021558	0.81309	0.00048075	591.2630431057046	68.299	0.41492	68.28	68.014	68.429	-0.01915					22	14	2	0	0	0	0.07432	1	17169	17169		43.858	11.553	1	324000			20615	304	11649	11650	25913	25913					-0.07197333110866566
KYEGKCVIDKV	11	Unmodified	_KYEGKCVIDKV_					0	0	0		ENSG00000151090|ENST00000646209|THRB;nc|ENSG00000151090|P10828-2|THRB	ENSG00000151090|ENST00000646209|THRB	ENSG00000151090|ENST00000646209|THRB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.34765625	2	641.347206	1280.67986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.96	1	84.037	83.537	84.537	0.077095								0	0	0	0.36517	1	21981	21981		4.897	0.95262	1				20616	4935	11650	11651	25914	25914					0.050745685226502246
KYELDFSHF	9	Unmodified	_KYELDFSHF_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.2825927734375	2	593.282389	1184.55022	1.0605	0.00062918	-0.65041	-0.00038588	0.41009	0.0002433	593.2818922350956	55.962	0.84376	55.962	55.628	56.471	0					88	30	4	0	0	0	4.8913000000000006E-24	2	13369	13369;13418		240.41	188.78	1	4580500			20617	4048	11651	11652	25915;25916	25915					-0.034668647649596096
KYELDFSHF	9	Unmodified	_KYELDFSHF_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.2825317382812	2	593.282389	1184.55022	0.84479	0.0005012	-0.26422	-0.00015675	0.58058	0.00034445	593.2821659491253	55.832	0.864	55.903	55.565	56.429	0.070889					85	31	4	0	0	0	4.8913000000000006E-24	3	13334	13334;13382;13457		240.41	194.71	1	4921300			20618	4048	11651	11652	25917;25918;25919	25917					-0.034668647649596096
KYELDFSHF	9	Unmodified	_KYELDFSHF_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.2826538085938	2	593.282389	1184.55022	0.98787	0.00058608	-0.28346	-0.00016817	0.70441	0.00041791	593.2821276036376	56.212	1.0119	56.193	55.853	56.865	-0.019081					91	36	4	0	0	0	4.8913000000000006E-24	3	13470	13422;13470;13524		240.41	190.48	1	7387800			20619	4048	11651	11652	25920;25921;25922	25921					-0.034668647649596096
KYERIFTLL	9	Unmodified	_KYERIFTLL_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8298950195312	2	591.847699	1181.68084	0.41559	0.00024596	-0.59018	-0.0003493	-0.1746	-0.00010333	591.8472716578584	58.926	0.52793	58.926	58.739	59.267	0					38	18	3	0	0	0	0.1426	2	14316	14316;14373		32.037	2.28	1	310520			20620	1782	11652	11653	25923;25924	25923					0.09727150953904129
KYERIFTLL	9	Unmodified	_KYERIFTLL_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8296508789062	2	591.847699	1181.68084	0.45658	0.00027023	-0.42145	-0.00024944	0.035128	2.079E-05	591.8473233921554	58.807	0.5382	58.898	58.645	59.183	0.091305					40	18	3	0	0	0	0.069258	1	14254	14254		45.74	7.5643	1	303970			20621	1782	11652	11653	25925	25925					0.09727150953904129
KYERIFTLL	9	Unmodified	_KYERIFTLL_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.831787109375	2	591.847699	1181.68084	0.46753	0.00027671	-0.076658	-4.537E-05	0.39088	0.00023134	591.8475064730277	58.957	0.41864	58.942	58.777	59.196	-0.014267					29	14	3	0	0	0	0.07848	1	14322	14322		42.312	5.8063	1	386900			20622	1782	11652	11653	25926	25926					0.09727150953904129
KYEVSVYAL	9	Unmodified	_KYEVSVYAL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.8598022460938	2	536.289682	1070.56481	0.64404	0.00034539	-0.8891	-0.00047682	-0.24506	-0.00013142	536.288505919243	54.185	0.74225	54.169	53.833	54.575	-0.015919					34	25	2	0	0	0	0.21623	1	12837	12837		27.223	11.074	1	451550			20623	2642	11653	11654	25927	25927					0.0323520738318166
KYFALPHKI	9	Unmodified	_KYFALPHKI_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.773193359375	2	558.831852	1115.64915	0.40034	0.00022372	-0.92592	-0.00051743	-0.52558	-0.00029371	558.8312738952998	37.995	0.76152	38.086	37.638	38.399	0.090881					51	27	3	0	0	0	0.24848	1	7784	7784		13.906	2.4113	1	325900			20624	1217	11654	11655	25928	25928					0.09595202990590224
KYFALPHKI	9	Unmodified	_KYFALPHKI_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	558.831852	1115.64915	0.21262	0.00011882	-0.69678	-0.00038938	-0.48416	-0.00027057	558.8315469859934	37.891	0.69547	37.989	37.682	38.378	0.097527	-0.066221	8.0627E-05	NaN	13.906	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349050			20625	1217	11654	11655							0.09595202990590224
KYFAQALKL	9	Unmodified	_KYFAQALKL_					0	0	0		ENST00000520294.5_1_8:109476316-109498824:+|nuORF;ENSG00000104412|ENST00000220853|EMC2	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3232421875	2	541.32386	1080.63317	0.20537	0.00011117	-1.1739	-0.00063545	-0.96851	-0.00052428	541.3230019361241	46.31	0.80932	46.31	46.003	46.813	0					91	29	4	0	0	0	0.0016361	2	10441	10390;10441		114.65	70.791	1	4550500			20626	1888	11655	11656	25929;25930	25930					0.09607496753687883
KYFAQALKL	9	Unmodified	_KYFAQALKL_					0	0	0		ENST00000520294.5_1_8:109476316-109498824:+|nuORF;ENSG00000104412|ENST00000220853|EMC2	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.322998046875	2	541.32386	1080.63317	0.28142	0.00015234	-1.046	-0.00056621	-0.76454	-0.00041386	541.3230641869305	46.104	0.8464	46.164	45.871	46.717	0.059834					86	30	4	0	0	0	0.0028626	1	10392	10392		103.35	71.048	1	4427500			20627	1888	11655	11656	25931	25931					0.09607496753687883
KYFAQALKL	9	Unmodified	_KYFAQALKL_					0	0	0		ENST00000520294.5_1_8:109476316-109498824:+|nuORF;ENSG00000104412|ENST00000220853|EMC2	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	ENST00000520294.5_1_8:109476316-109498824:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.322509765625	2	541.32386	1080.63317	0.55477	0.00030031	-1.3039	-0.00070586	-0.74917	-0.00040555	541.3229129845396	46.128	0.96592	46.193	45.872	46.838	0.065048					95	34	4	0	0	0	0.0033114	1	10393	10393		99.799	72.17	1	4498200			20628	1888	11655	11656	25932	25932					0.09607496753687883
KYFATFEVF	9	Unmodified	_KYFATFEVF_					0	0	0		ENSG00000108239|ENST00000225235|TBC1D12	ENSG00000108239|ENST00000225235|TBC1D12	ENSG00000108239|ENST00000225235|TBC1D12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.2933959960938	2	576.292225	1150.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.001	1	91.001	90.501	91.501	0								0	0	0	0.24715	1	24146	24146		7.2892	0.56607	1				20629	2169	11656	11657	25933	25933					0.0006351124582124612
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.1866455078125	3	431.852266	1292.53497	-0.27361	-0.00011816	0.11735	5.0676E-05	-0.15626	-6.7482E-05	431.8522640214433	39.894	1.2073	39.894	39.48	40.688	0					112	43	4	0	0	0	0.25112	1	8422	8422		11.518	7.9308	1	1179300			20630	3126	11657	11658	25934	25934					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.2748413085938	2	647.274761	1292.53497	0.24774	0.00016036	0.28875	0.0001869	0.53649	0.00034725	647.2748652359311	39.885	0.76453	39.885	39.569	40.334	0					69	27	3	0	0	0	3.6949E-07	3	8475	8425;8475;8534		165.72	141.7	1	740790			20631	3126	11657	11658	25935;25936;25937	25936					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.8522033691406	3	431.852266	1292.53497	-0.034986	-1.5109E-05	-0.082699	-3.5714E-05	-0.11769	-5.0823E-05	431.852182653396	39.555	1.0874	39.648	39.332	40.42	0.09267					105	38	4	0	0	0	0.2719	2	8344	8344;8397		12.873	9.2799	1	1570900			20632	3126	11657	11658	25938;25939	25938					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.2753295898438	2	647.274761	1292.53497	0.37519	0.00024285	0.23005	0.0001489	0.60523	0.00039175	647.2748816132993	39.557	0.63517	39.65	39.416	40.051	0.09267					58	22	3	0	0	0	3.0646E-11	2	8346	8346;8398		193.29	169.27	1	821790			20633	3126	11657	11658	25940;25941	25940					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.2748413085938	2	647.274761	1292.53497	0.32681	0.00021153	0.21416	0.00013862	0.54097	0.00035016	647.2748077546823	39.586	0.60857	39.685	39.481	40.09	0.099403					56	21	4	0	0	0	2.4752E-08	3	8389	8341;8389;8448		179.17	148.54	1	942900			20634	3126	11657	11658	25942;25943;25944	25943					-0.09959776352798144
KYFDEHYEY	9	Unmodified	_KYFDEHYEY_					0	0	0		ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.85205078125	3	431.852266	1292.53497	-0.077433	-3.344E-05	-0.021882	-9.4498E-06	-0.099315	-4.289E-05	431.8521946754644	39.624	1.1075	39.723	39.424	40.532	0.099407					102	39	5	0	0	0	0.26612	2	8345	8345;8395		9.544	3.3521	1	1850200			20635	3126	11657	11658	25945;25946	25945					-0.09959776352798144
KYFDNSQSL	9	Unmodified	_KYFDNSQSL_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.26416015625	2	551.264196	1100.51384	0.24128	0.00013301	0.28086	0.00015483	0.52215	0.00028784	551.2640941890643	38.305	0.83896	38.305	38.034	38.873	0					62	29	4	0	0	0	0.020233	1	8023	8023		63.961	32.692	1	1083600			20636	12574	11658	11659	25947	25947					-0.03239741661673179
KYFDNSQSL	9	Unmodified	_KYFDNSQSL_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.26416015625	2	551.264196	1100.51384	0.48401	0.00026682	-0.23362	-0.00012879	0.25039	0.00013803	551.2638836111364	38.231	0.71231	38.322	38.072	38.784	0.090881					56	25	3	0	0	0	0.00051734	1	7992	7992		128.93	75.1	1	1180800			20637	12574	11658	11659	25948	25948					-0.03239741661673179
KYFDNSQSL	9	Unmodified	_KYFDNSQSL_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.2642822265625	2	551.264196	1100.51384	0.36281	0.00020001	0.12575	6.9321E-05	0.48856	0.00026933	551.2640478713138	38.163	0.80155	38.261	37.981	38.782	0.097527					60	28	3	0	0	0	8.0996E-05	1	7956	7956		143.91	90.076	1	1083500			20638	12574	11658	11659	25949	25949					-0.03239741661673179
KYFEEITKL	9	Unmodified	_KYFEEITKL_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8135375976562	2	585.823889	1169.63323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.183	1	95.181	94.681	95.681	-0.0020142								0	0	0	0.2489	1	25421	25421		6.7232	0.99131	1		+		20639	15599	11659	11660	25950	25950					0.05519451963027677
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.32177734375	2	616.321514	1230.62847	0.33138	0.00020424	0.13822	8.5189E-05	0.4696	0.00028942	616.3215095797998	46.754	0.95331	46.754	46.458	47.411	0					82	33	4	0	0	0	0.0019382	3	10559	10515;10559;10604		110.79	58.753	1	5393400			20640	4783	11660	11661	25951;25952;25953	25952					0.02238567820290882
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2170715332031	3	411.216768	1230.62847	0.085866	3.5309E-05	0.54376	0.0002236	0.62963	0.00025891	411.2169311635563	46.765	1.2801	46.765	46.402	47.682	0					138	45	5	0	0	0	0.058995	2	10577	10527;10577		39.213	12.317	1	9264400			20641	4783	11660	11661	25954;25955	25955					0.02238567820290882
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2164001464844	3	411.216768	1230.62847	0.26996	0.00011101	-0.3705	-0.00015236	-0.10054	-4.1343E-05	411.21658078653917	46.478	1.2855	46.53	46.202	47.487	0.05257					128	47	4	0	0	0	0.026579	2	10441	10441;10487		49.742	26.726	1	8100100			20642	4783	11660	11661	25956;25957	25956					0.02238567820290882
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.32080078125	2	616.321514	1230.62847	0.25154	0.00015503	-0.31228	-0.00019247	-0.06074	-3.7436E-05	616.3212627338138	46.496	1.4079	46.548	45.918	47.326	0.052574					123	51	5	0	0	0	0.0011116	3	10443	10443;10488;10539		121.35	58.773	1	5185400			20643	4783	11660	11661	25958;25959;25960	25958					0.02238567820290882
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2164001464844	3	411.216768	1230.62847	0.042551	1.7498E-05	-0.025625	-1.0537E-05	0.016926	6.9604E-06	411.2167071048891	46.539	1.4056	46.593	46.243	47.648	0.054375					153	50	5	0	0	0	0.058995	3	10434	10434;10487;10537		39.213	20.873	1	8046900			20644	4783	11660	11661	25961;25962;25963	25961					0.02238567820290882
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.3212890625	2	616.321514	1230.62847	0.094778	5.8414E-05	-0.23523	-0.00014498	-0.14045	-8.6565E-05	616.3211985626739	46.509	1.4442	46.564	45.94	47.384	0.054375					110	51	4	0	0	0	0.0019382	3	10447	10447;10493;10546		110.79	56.96	1	5307300			20645	4783	11660	11661	25964;25965;25966	25964					0.02238567820290882
KYFEVPSVL	9	Unmodified	_KYFEVPSVL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.300048828125	2	541.30005	1080.58555	0.65335	0.00035366	-0.24067	-0.00013027	0.41269	0.00022339	541.3001569279548	64.578	1.4846	64.578	63.889	65.373	0					135	54	4	0	0	0	0.0041491	3	16095	16048;16095;16142		93.166	27.931	1	3107800			20646	3600	11661	11662	25967;25968;25969	25968					0.04847797762840855
KYFEVPSVL	9	Unmodified	_KYFEVPSVL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2999267578125	2	541.30005	1080.58555	0.6553	0.00035472	-0.36843	-0.00019943	0.28688	0.00015529	541.3001119409863	64.492	1.5362	64.585	63.848	65.384	0.09288					142	56	5	0	0	0	0.0041491	3	16056	16008;16056;16105		93.166	27.931	1	3320300			20647	3600	11661	11662	25970;25971;25972	25971					0.04847797762840855
KYFEVPSVL	9	Unmodified	_KYFEVPSVL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.3001708984375	2	541.30005	1080.58555	0.68049	0.00036835	-0.73507	-0.00039789	-0.05458	-2.9544E-05	541.2997442684704	64.64	1.2723	64.63	64.101	65.374	-0.0095291					122	46	5	0	0	0	0.0041491	2	16084	16084;16132		93.166	27.931	1	3546400			20648	3600	11661	11662	25973;25974	25973					0.04847797762840855
KYFEVPSVLL	10	Unmodified	_KYFEVPSVLL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.84228515625	2	597.842082	1193.66961	0.21405	0.00012797	0.1829	0.00010935	0.39695	0.00023731	597.8421538386449	73.701	0.58092	73.701	73.417	73.998	0					55	20	4	0	0	0	0.040516	2	18838	18838;18887		61.09	37.069	1	1143500			20649	3600	11662	11663	25975;25976	25975					0.08052328859753288
KYFEVPSVLL	10	Unmodified	_KYFEVPSVLL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.84228515625	2	597.842082	1193.66961	0.39424	0.00023569	-0.046946	-2.8067E-05	0.34729	0.00020763	597.8419509900679	73.707	0.56128	73.76	73.47	74.031	0.052361					48	19	3	0	0	0	0.040516	1	18832	18832		61.09	37.069	1	1002700			20650	3600	11662	11663	25977	25977					0.08052328859753288
KYFEVPSVLL	10	Unmodified	_KYFEVPSVLL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8421630859375	2	597.842082	1193.66961	0.3073	0.00018372	0.088579	5.2956E-05	0.39588	0.00023667	597.8421080564342	73.776	0.60874	73.746	73.502	74.111	-0.030655					57	21	4	0	0	0	0.040516	2	18842	18842;18892		61.09	32.008	1	1130200			20651	3600	11662	11663	25978;25979	25978					0.08052328859753288
KYFFYQVLT	9	Unmodified	_KYFFYQVLT_					0	0	0			REV__ENST00000466758.5_1_3:182602545-182631653:+|nuORF	REV__ENST00000466758.5_1_3:182602545-182631653:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.3220825195312	2	604.82115	1207.62775	0.4209	0.00025457	-1.0475	-0.00063353	-0.62657	-0.00037896	604.8204691420524	76.309	0.80893	76.277	76.02	76.828	-0.031487					70	29	3	0	0	0	0.16283	1	19638	19638		29.082	5.061	1	600530	+		20652	13604	11663	11664	25980	25980					0.0322377317122573
KYFHPPAHL	9	Unmodified	_KYFHPPAHL_					0	0	0		nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2982177734375	2	555.298176	1108.5818	0.17523	9.7305E-05	0.047832	2.6561E-05	0.22306	0.00012387	555.7996243923416	31.152	1.1374	31.152	30.473	31.61	0					110	40	4	0	0	0	0.0036555	3	5800	5707;5751;5800		97.075	75.538	1	953480			20653	12724;5029	11664	11665	25981;25982;25983	25983					0.031851727796492924
KYFHPPAHL	9	Unmodified	_KYFHPPAHL_					0	0	0		nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2982177734375	2	555.298176	1108.5818	0.088264	4.9013E-05	0.12602	6.9976E-05	0.21428	0.00011899	555.2982447383409	31.119	1.0629	31.147	30.523	31.586	0.027946					110	37	4	0	0	0	0.0046213	3	5763	5679;5763;5810		89.427	89.427	1	1135100			20654	12724;5029	11664	11665	25984;25985;25986	25985					0.031851727796492924
KYFHPPAHL	9	Unmodified	_KYFHPPAHL_					0	0	0		nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000139793|Q5VZF2-2|MBNL2	nc|ENSG00000139793|Q5VZF2-2|MBNL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2984008789062	2	555.298176	1108.5818	0.16382	9.0968E-05	0.087386	4.8526E-05	0.2512	0.00013949	555.2982898066181	31.095	1.0677	31.135	30.518	31.586	0.039772					104	38	4	0	0	0	0.0016131	3	5787	5678;5737;5787		114.94	80.542	1	966550			20655	12724;5029	11664	11665	25987;25988;25989	25989					0.031851727796492924
KYFIFICKR	9	Unmodified	_KYFIFICKR_					0	0	0		ENST00000376414.4_1_13:99946981-99947236:-|nuORF	ENST00000376414.4_1_13:99946981-99947236:-|nuORF	ENST00000376414.4_1_13:99946981-99947236:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.2630615234375	3	406.566967	1216.67907	0.22909	9.314E-05	0.32803	0.00013337	0.55712	0.00022651	406.5670756113409	32.428	0.27674	32.428	32.279	32.556	0					15	9	2	0	0	0	0.25202	1	6184	6184		7.1017	0	1	81569			20656	9923	11665	11666	25990	25990					0.07939818664272025
KYFILILF	8	Unmodified	_KYFILILF_					0	0	0		nc|ENSG00000185862|P34910-2|EVI2B;ENSG00000185862|ENST00000330927|EVI2B	nc|ENSG00000185862|P34910-2|EVI2B	nc|ENSG00000185862|P34910-2|EVI2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8302612304688	2	528.828246	1055.64194	0.14779	7.8156E-05	3.3471	0.0017701	3.4949	0.0018482	528.8297843258982	12.079	0.14105	11.982	11.912	12.053	-0.096607					9	6	2	0	0	0	0.46461	1	28	28		0.79363	0	1	29645			20657	12882	11666	11667	25991	25991					0.11634470390185925
KYFIRDEFL	9	Unmodified	_KYFIRDEFL_					0	0	0		nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|P63092-3|GNAS	nc|ENSG00000087460|P63092-3|GNAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.3092041015625	2	615.829506	1229.64446	0.17713	0.00010908	-0.91562	-0.00056387	-0.7385	-0.00045479	615.8291576686942	43.316	0.27562	43.316	43.087	43.362	0					11	9	2	0	0	0	0.18208	1	9497	9497		26.268	5.8145	1	192810			20658	1308	11667	11668	25992	25992					0.03882274057173163
KYFIRDEFL	9	Unmodified	_KYFIRDEFL_					0	0	0		nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	nc|ENSG00000087460|P63092-3|GNAS	nc|ENSG00000087460|P63092-3|GNAS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	615.829506	1229.64446	-0.008409	-5.1785E-06	-0.1558	-9.5946E-05	-0.16421	-0.00010112	615.8296931265286	42.859	0.37769	42.95	42.717	43.095	0.091362	-0.1832	0.00057804	NaN	26.268	15	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124940			20659	1308	11667	11668							0.03882274057173163
KYFLKPEVL	9	Unmodified	_KYFLKPEVL_					0	0	0		nc|ENSG00000144959|Q6PIU2-3|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-2|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.8394165039062	2	568.839342	1135.66413	0.50644	0.00028808	-0.23811	-0.00013545	0.26833	0.00015264	568.8392813033605	47.688	0.858	47.688	47.38	48.238	0					76	30	5	0	0	0	0.089483	1	10824	10824		59.368	37.831	1	5372100			20660	4625	11668	11669	25993	25993					0.10172650067943323
KYFLKPEVL	9	Unmodified	_KYFLKPEVL_					0	0	0		nc|ENSG00000144959|Q6PIU2-3|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-2|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3009643554688	2	568.839342	1135.66413	0.63643	0.00036203	-0.37089	-0.00021097	0.26555	0.00015105	568.8391308157659	47.637	0.91108	47.684	47.374	48.285	0.04752					78	33	4	0	0	0	0.099099	1	10831	10831		55.503	32.766	1	5303600			20661	4625	11668	11669	25994	25994					0.10172650067943323
KYFLKPEVL	9	Unmodified	_KYFLKPEVL_					0	0	0		nc|ENSG00000144959|Q6PIU2-3|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-2|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.3009643554688	2	568.839342	1135.66413	0.5472	0.00031127	-0.20606	-0.00011722	0.34114	0.00019405	568.8392395026668	47.664	0.84186	47.707	47.401	48.243	0.04332					76	31	4	0	0	0	0.099099	1	10823	10823		55.503	32.766	1	5482000			20662	4625	11668	11669	25995	25995					0.10172650067943323
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	645.3302612304688	2	645.331882	1288.64921	0.10406	6.7151E-05	-0.60794	-0.00039232	-0.50388	-0.00032517	645.3312109086828	59.862	0.45066	59.862	59.675	60.126	0					38	15	4	0	0	0	5.7869E-11	2	14581	14581;14619		184.36	134.8	1	855940			20663	5101	11669	11670	25996;25997	25996					0.016431581999313494
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.5568542480469	3	430.557013	1288.64921	-0.3215	-0.00013842	-2.0546	-0.00088462	-2.3761	-0.001023	430.5568768154211	59.848	1.4913	59.848	59.445	60.936	0					98	53	3	0	0	0	0.038291	2	14593	14593;14651		53.47	43.154	1	1328600			20664	5101	11669	11670	25998;25999	25998					0.016431581999313494
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.5568542480469	3	430.557013	1288.64921	-0.35547	-0.00015305	-2.5942	-0.001117	-2.9497	-0.00127	430.55694435073	59.705	2.0188	59.8	59.019	61.037	0.095093					97	72	2	0	0	0	0.11201	2	14567	14515;14567		40.725	30.961	1	845310			20665	5101	11669	11670	26000;26001	26001					0.016431581999313494
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	645.3316650390625	2	645.331882	1288.64921	0.063886	4.1228E-05	-0.26202	-0.00016909	-0.19814	-0.00012787	645.3315295590377	59.675	0.55577	59.77	59.521	60.077	0.095093					42	19	3	0	0	0	5.3912E-07	2	14525	14525;14577		159.1	113.36	1	729410			20666	5101	11669	11670	26002;26003	26002					0.016431581999313494
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.5567321777344	3	430.557013	1288.64921	-0.1148	-4.9428E-05	-2.0451	-0.00088054	-2.1599	-0.00092996	430.55670297798133	59.887	1.7702	59.875	58.715	60.485	-0.011486					118	62	3	0	0	0	0.069258	2	14581	14581;14631		42.835	26.745	1	1232700			20667	5101	11669	11670	26004;26005	26004					0.016431581999313494
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	645.3316040039062	2	645.331882	1288.64921	0.32067	0.00020694	-0.71533	-0.00046162	-0.39465	-0.00025468	645.331183025646	59.93	0.43319	59.919	59.652	60.085	-0.011486					31	14	3	0	0	0	2.2231E-07	2	14633	14582;14633		171.46	131.51	1	959080			20668	5101	11669	11670	26006;26007	26007					0.016431581999313494
KYFNSYTLT	9	Unmodified	_KYFNSYTLT_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.7416381835938	2	568.784764	1135.55498	0.46885	0.00026667	-4.4848	-0.0025509	-4.016	-0.0022842	569.2834986810478	48.235	0.268	48.235	48.18	48.448	0					11	8	2	0	0	0	0.2451	1	11012	11012		10.824	0	1	359170			20669	6760	11670	11671	26008	26008					-0.0073798062219339045
KYFQGDLQLF	10	Unmodified	_KYFQGDLQLF_					0	0	0		ENSG00000005882|ENST00000503176|PDK2;ENST00000512204.5_1_17:48185497-48187458:+|nuORF;nc|ENSG00000005882|Q15119-2|PDK2	ENSG00000005882|ENST00000503176|PDK2	ENSG00000005882|ENST00000503176|PDK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.8270263671875	2	629.826963	1257.63937	0.26772	0.00016862	-0.11387	-7.1717E-05	0.15386	9.6903E-05	629.8268801406654	67.956	0.77235	68.034	67.77	68.543	0.078041					81	27	4	0	0	0	0.022191	1	17118	17118		69.338	14.104	1	1379700			20670	345	11671	11672	26009	26009					0.02085970194548281
KYFQGDLQLF	10	Unmodified	_KYFQGDLQLF_					0	0	0		ENSG00000005882|ENST00000503176|PDK2;ENST00000512204.5_1_17:48185497-48187458:+|nuORF;nc|ENSG00000005882|Q15119-2|PDK2	ENSG00000005882|ENST00000503176|PDK2	ENSG00000005882|ENST00000503176|PDK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.8272094726562	2	629.826963	1257.63937	0.35578	0.00022408	-0.19721	-0.00012421	0.15857	9.9871E-05	629.8268324001124	68.101	0.98439	68.085	67.785	68.769	-0.016296					86	34	4	0	0	0	0.10152	1	17167	17167		47.732	5.7764	1	1502300			20671	345	11671	11672	26010	26010					0.02085970194548281
KYFSLPSVVF	10	Unmodified	_KYFSLPSVVF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8299560546875	2	593.828975	1185.6434	0.32968	0.00019577	-0.083947	-4.985E-05	0.24573	0.00014592	593.8296714717786	76.239	4.7748	76.239	75.794	80.569	0					534	181	6	0	0	0	2.0929E-05	20	19642	19549;19600;19642;19684;19725;19766;19807;19855;19912;19970;20116;20171;20301;20351;20408;20452;20628;20688;20732;20793		143.91	91.641	1	73601000			20672	8529;12963;8544;8548	11672	11673	26011;26012;26013;26014;26015;26016;26017;26018;26019;26020;26021;26022;26023;26024;26025;26026;26027;26028;26029;26030	26013					0.058000596882720856
KYFSLPSVVF	10	Unmodified	_KYFSLPSVVF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8292236328125	2	593.828975	1185.6434	0.42145	0.00025027	-0.30926	-0.00018365	0.11218	6.6618E-05	593.8288074213418	81.12	0.65388	81.12	80.904	81.558	0					61	30	3	0	0	0	0.3001	2	21109	21109;21168		20.415	7.3721	1	145360			20673	8529;12963;8544;8548	11672	11673	26031;26032	26031					0.058000596882720856
KYFSLPSVVF	10	Unmodified	_KYFSLPSVVF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8298950195312	2	593.828975	1185.6434	0.71771	0.0004262	-1.0531	-0.00062534	-0.33535	-0.00019914	593.8287319933182	83.471	0.53815	83.471	83.347	83.885	0					26	19	2	0	0	0	0.37751	1	21886	21886		7.609	1.8771	1	166480			20674	8529;12963;8544;8548	11672	11673	26033	26033					0.058000596882720856
KYFSLPSVVF	10	Unmodified	_KYFSLPSVVF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.7852172851562	2	593.828975	1185.6434	0.44735	0.00026565	-0.43728	-0.00025967	0.010076	5.9835E-06	593.8286673783143	81.95	0.75792	81.95	81.504	82.262	0					48	28	2	0	0	0	0.31581	1	21310	21310		11.495	2.1116	1	188370			20675	8529;12963;8544;8548	11672	11673	26034	26034					0.058000596882720856
KYFSLPSVVF	10	Unmodified	_KYFSLPSVVF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.7854614257812	2	593.828975	1185.6434	0.57875	0.00034368	-0.57725	-0.00034279	0.0014966	8.8872E-07	593.8286249507782	82.351	0.91796	82.351	82.138	83.056	0					44	33	2	0	0	0	0.31838	1	21698	21698		7.609	1.8771	1	99295			20676	8529;12963;8544;8548	11672	11673	26035	26035					0.058000596882720856
KYFSLPSVVF	10	Unmodified	_KYFSLPSVVF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8300170898438	2	593.828975	1185.6434	0.32261	0.00019157	-0.043554	-2.5864E-05	0.27905	0.00016571	593.8296090304597	76.177	6.2714	76.231	75.782	82.053	0.053413					524	250	3	0	0	0	3.3013E-05	24	19624	19523;19574;19600;19624;19671;19713;19764;19815;19866;19916;19968;20019;20080;20129;20287;20334;20382;20430;20586;20634;20702;20768;20968;21022		136.39	82.559	1	87613000			20677	8529;12963;8544;8548	11672	11673	26036;26037;26038;26039;26040;26041;26042;26043;26044;26045;26046;26047;26048;26049;26050;26051;26052;26053;26054;26055;26056;26057;26058;26059	26039					0.058000596882720856
KYFSLPSVVF	10	Unmodified	_KYFSLPSVVF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.7854614257812	2	593.828975	1185.6434	0.37896	0.00022504	-0.5285	-0.00031384	-0.14954	-8.8799E-05	593.8285204713818	82.241	0.42447	82.31	82.045	82.469	0.068993					23	17	2	0	0	0	0.31401	1	21371	21371		14.405	8.6735	1	126040			20678	8529;12963;8544;8548	11672	11673	26060	26060					0.058000596882720856
KYFSLPSVVF	10	Unmodified	_KYFSLPSVVF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8302001953125	2	593.828975	1185.6434	0.47781	0.00028374	-0.16453	-9.7704E-05	0.31327	0.00018603	593.829632741108	76.273	5.0678	76.242	75.829	80.897	-0.031487					566	191	6	0	0	0	0.00068414	22	19594	19552;19594;19633;19650;19700;19743;19791;19837;19885;19927;19979;20131;20317;20363;20410;20452;20626;20674;20742;20792;20846;20982		125.04	72.769	1	91778000			20679	8529;12963;8544;8548	11672	11673	26061;26062;26063;26064;26065;26066;26067;26068;26069;26070;26071;26072;26073;26074;26075;26076;26077;26078;26079;26080;26081;26082	26062					0.058000596882720856
KYFSLPSVVF	10	Unmodified	_KYFSLPSVVF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.3310546875	2	593.828975	1185.6434	0.40493	0.00024046	-0.25036	-0.00014867	0.15457	9.1789E-05	593.8288200422506	81.225	0.9261	81.201	80.817	81.743	-0.02404					70	40	2	0	0	0	0.31681	4	21054	21042;21054;21105;21160		18.373	8.99	1	228070			20680	8529;12963;8544;8548	11672	11673	26083;26084;26085;26086	26084					0.058000596882720856
KYFSLPSVVF	10	Unmodified	_KYFSLPSVVF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.82861328125	2	593.828975	1185.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.475	1	83.458	82.958	83.958	-0.016823								0	0	0	0.34897	1	21825	21825		15.248	5.8654	1				20681	8529;12963;8544;8548	11672	11673	26087	26087					0.058000596882720856
KYFSLPSVVF	10	Unmodified	_KYFSLPSVVF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7857666015625	2	593.828975	1185.6434	0.53074	0.00031517	-0.59943	-0.00035596	-0.068689	-4.079E-05	593.828659520053	82.691	0.8035	82.67	82.224	83.027	-0.020576					44	31	2	0	0	0	0.31642	1	21461	21461		10.8	2.0541	1	200810			20682	8529;12963;8544;8548	11672	11673	26088	26088					0.058000596882720856
KYFSLPSVVF	10	Unmodified	_KYFSLPSVVF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7852783203125	2	593.828975	1185.6434	0.44737	0.00026566	-0.35238	-0.00020925	0.094989	5.6407E-05	593.8287331277287	82.242	0.61233	82.218	81.637	82.249	-0.02404					40	23	2	0	0	0	0.31119	1	21356	21356		18.373	8.99	1	296720			20683	8529;12963;8544;8548	11672	11673	26089	26089					0.058000596882720856
KYFSSMAEF	9	Oxidation (M)	_KYFSSM(Oxidation (M))AEF_		KYFSSM(1)AEF		KYFSSM(140)AEF	0	0	1		ENSG00000105618|ENST00000321030|PRPF31;ENST00000466404.5_1_19:54631532-54634860:+|nuORF	ENSG00000105618|ENST00000321030|PRPF31	ENSG00000105618|ENST00000321030|PRPF31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.2495727539062	2	563.2497	1124.48485	0.23357	0.00013156	-0.27133	-0.00015283	-0.037759	-2.1268E-05	563.2493716117239	44.048	0.94296	44.048	43.741	44.684	0					72	34	4	0	0	0	0.00010125	2	9720	9720;9770		140.63	113.75	1	1644500			20684	1997	11673	11674	26090;26091	26090		244			-0.07241602282306303
KYFSSMAEF	9	Oxidation (M)	_KYFSSM(Oxidation (M))AEF_		KYFSSM(1)AEF		KYFSSM(110)AEF	0	0	1		ENSG00000105618|ENST00000321030|PRPF31;ENST00000466404.5_1_19:54631532-54634860:+|nuORF	ENSG00000105618|ENST00000321030|PRPF31	ENSG00000105618|ENST00000321030|PRPF31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.2496337890625	2	563.2497	1124.48485	0.4125	0.00023234	-0.36894	-0.00020781	0.043554	2.4532E-05	563.2493171870625	43.624	1.0713	43.702	43.425	44.497	0.077515					74	39	3	0	0	0	0.001957	2	9630	9581;9630		110.55	76.151	1	1729200			20685	1997	11673	11674	26092;26093	26093		244			-0.07241602282306303
KYFSSMAEF	9	Oxidation (M)	_KYFSSM(Oxidation (M))AEF_		KYFSSM(1)AEF		KYFSSM(100)AEF	0	0	1		ENSG00000105618|ENST00000321030|PRPF31;ENST00000466404.5_1_19:54631532-54634860:+|nuORF	ENSG00000105618|ENST00000321030|PRPF31	ENSG00000105618|ENST00000321030|PRPF31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.2496337890625	2	563.2497	1124.48485	0.32078	0.00018068	-0.45837	-0.00025818	-0.13759	-7.7498E-05	563.2492904226059	43.662	0.90819	43.746	43.463	44.371	0.083992					76	33	4	0	0	0	0.0032746	1	9620	9620		100.09	69.866	1	1473600			20686	1997	11673	11674	26094	26094		244			-0.07241602282306303
KYGALVNNF	9	Unmodified	_KYGALVNNF_					0	0	0		ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;ENSG00000117481|ENST00000474844|NSUN4;ENST00000495427.1_2_1:46810505-46812688:+|nuORF	ENST00000475281.1_1_1:46810505-46810817:+|nuORF	ENST00000475281.1_1_1:46810505-46810817:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2747192382812	2	513.274367	1024.53418	0.4678	0.00024011	0.56971	0.00029242	1.0375	0.00053253	513.2746267966611	45.97	1.0894	45.97	45.614	46.703	0					73	39	2	0	0	0	0.0013036	3	10336	10285;10336;10392		118.89	65.319	1	3750700			20687	2795	11674	11675	26095;26096;26097	26096					0.02289473788800933
KYGALVNNF	9	Unmodified	_KYGALVNNF_					0	0	0		ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;ENSG00000117481|ENST00000474844|NSUN4;ENST00000495427.1_2_1:46810505-46812688:+|nuORF	ENST00000475281.1_1_1:46810505-46810817:+|nuORF	ENST00000475281.1_1_1:46810505-46810817:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2747802734375	2	513.274367	1024.53418	0.19998	0.00010264	0.85437	0.00043853	1.0544	0.00054117	513.2747647140984	45.75	0.94703	45.81	45.418	46.365	0.059834					65	33	2	0	0	0	0.0018995	3	10207	10207;10256;10312		111.29	64.366	1	4185000			20688	2795	11674	11675	26098;26099;26100	26098					0.02289473788800933
KYGALVNNF	9	Unmodified	_KYGALVNNF_					0	0	0		ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;ENSG00000117481|ENST00000474844|NSUN4;ENST00000495427.1_2_1:46810505-46812688:+|nuORF	ENST00000475281.1_1_1:46810505-46810817:+|nuORF	ENST00000475281.1_1_1:46810505-46810817:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2749633789062	2	513.274367	1024.53418	0.38037	0.00019523	1.7854	0.00091643	2.1658	0.0011117	513.2746871970877	45.672	1.3673	45.737	45.274	46.642	0.065048					140	49	5	0	0	0	0.00033443	3	10238	10189;10238;10281		131.27	67.705	1	3663100			20689	2795	11674	11675	26101;26102;26103	26102					0.02289473788800933
KYGDIIFDF	9	Unmodified	_KYGDIIFDF_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5;ENST00000523397.1_1_8:126095350-126096053:-|nuORF	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2820434570312	2	559.281857	1116.54916	0.67095	0.00037525	-0.65318	-0.00036531	0.01777	9.9387E-06	559.2813307690463	74.721	0.50481	74.721	74.507	75.012	0					39	17	3	0	0	0	0.01909	1	19176	19176		65.474	31.072	1	698570			20690	5909	11675	11676	26104	26104					-0.004450791338513227
KYGDIIFDF	9	Unmodified	_KYGDIIFDF_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5;ENST00000523397.1_1_8:126095350-126096053:-|nuORF	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.281494140625	2	559.281857	1116.54916	0.33771	0.00018887	-0.33829	-0.0001892	-0.00058559	-3.2751E-07	559.2816711000977	74.676	0.59215	74.729	74.459	75.051	0.052361					42	20	3	0	0	0	0.048637	1	19149	19149		53.404	19.002	1	786600			20691	5909	11675	11676	26105	26105					-0.004450791338513227
KYGDIIFDF	9	Unmodified	_KYGDIIFDF_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5;ENST00000523397.1_1_8:126095350-126096053:-|nuORF	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.281982421875	2	559.281857	1116.54916	0.51189	0.00028629	-0.36128	-0.00020206	0.15061	8.4236E-05	559.2815149092756	74.811	0.73482	74.779	74.5	75.235	-0.031487					53	26	3	0	0	0	0.017549	1	19178	19178		67.838	25.999	1	770710			20692	5909	11675	11676	26106	26106					-0.004450791338513227
KYGFGYQL	8	Unmodified	_KYGFGYQL_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5;ENSG00000185988|ENST00000454744|PLK5	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.250732421875	2	488.25036	974.486168	0.46043	0.00022481	-0.16351	-7.9833E-05	0.29693	0.00014497	488.25051368732534	51.232	1.5119	51.232	50.896	52.408	0					174	55	5	0	0	0	0.026838	4	11899	11899;11941;11991;12051		92.822	48.415	1	25788000			20693	4661	11676	11677	26107;26108;26109;26110	26107					-0.0020960013124522447
KYGFGYQL	8	Unmodified	_KYGFGYQL_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5;ENSG00000185988|ENST00000454744|PLK5	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2508239746094	2	488.25036	974.486168	0.35232	0.00017202	-0.1355	-6.6157E-05	0.21682	0.00010586	488.25051465682606	51.222	1.485	51.269	50.9	52.385	0.046574					176	54	5	0	0	0	0.026838	3	11941	11894;11941;11990		92.822	45.569	1	25854000			20694	4661	11676	11677	26111;26112;26113	26112					-0.0020960013124522447
KYGFGYQL	8	Unmodified	_KYGFGYQL_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5;ENSG00000185988|ENST00000454744|PLK5	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2508239746094	2	488.25036	974.486168	0.38004	0.00018555	-0.27401	-0.00013378	0.10603	5.1771E-05	488.25040867909394	51.35	2.2199	51.36	50.991	53.211	0.0095634					213	82	5	0	0	0	0.026838	3	11969	11922;11969;12018		92.822	48.415	1	23621000			20695	4661	11676	11677	26114;26115;26116	26115					-0.0020960013124522447
KYGFYTHVF	9	Unmodified	_KYGFYTHVF_					0	0	0		ENSG00000180210|ENST00000311907|F2;CON__P00735	ENSG00000180210|ENST00000311907|F2	ENSG00000180210|ENST00000311907|F2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.290283203125	2	581.290017	1160.56548	0.40399	0.00023484	-0.27882	-0.00016207	0.12518	7.2765E-05	581.2898969409064	48.661	1.7382	48.661	48.156	49.894	0					148	62	4	0	0	0	5.0285E-07	5	11176	11102;11128;11176;11241;11325		160.52	112.77	1	6495300		+	20696	206	11677	11678	26117;26118;26119;26120;26121	26119					-0.008379531770970061
KYGFYTHVF	9	Unmodified	_KYGFYTHVF_					0	0	0		ENSG00000180210|ENST00000311907|F2;CON__P00735	ENSG00000180210|ENST00000311907|F2	ENSG00000180210|ENST00000311907|F2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.2901611328125	2	581.290017	1160.56548	0.47049	0.00027349	-0.27272	-0.00015853	0.19776	0.00011496	581.289889350044	48.679	1.7537	48.724	48.227	49.981	0.044891					157	64	4	0	0	0	6.1526E-05	5	11160	11117;11160;11209;11315;11372		147.06	99.31	1	5543500		+	20697	206	11677	11678	26122;26123;26124;26125;26126	26123					-0.008379531770970061
KYGFYTHVF	9	Unmodified	_KYGFYTHVF_					0	0	0		ENSG00000180210|ENST00000311907|F2;CON__P00735	ENSG00000180210|ENST00000311907|F2	ENSG00000180210|ENST00000311907|F2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.290283203125	2	581.290017	1160.56548	0.35551	0.00020665	-0.21389	-0.00012433	0.14161	8.2319E-05	581.289933721405	48.566	1.4456	48.599	48.156	49.602	0.032043					136	52	4	0	0	0	6.1526E-05	3	11131	11082;11131;11261		147.06	90.882	1	5594600		+	20698	206	11677	11678	26127;26128;26129	26128					-0.008379531770970061
KYGGSNDLGY	10	Unmodified	_KYGGSNDLGY_					0	0	0			REV__ENSG00000153975|ENST00000368576|ZUP1	REV__ENSG00000153975|ENST00000368576|ZUP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.26904296875	2	537.248546	1072.48254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.872	1	50.872	50.372	51.372	0								0	0	0	0.36108	1	11829	11829		10.151	0.76745	1		+		20699	16640	11678	11679	26130	26130					-0.05080314695760535
KYGIQMPAF	9	Oxidation (M)	_KYGIQM(Oxidation (M))PAF_		KYGIQM(1)PAF		KYGIQM(130)PAF	0	0	1		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7708740234375	2	535.770603	1069.52665	0.76359	0.00040911	-0.24404	-0.00013075	0.51956	0.00027836	535.7703373349065	46.93	1.3108	46.93	46.487	47.797	0					165	46	5	0	0	0	0.00056175	3	10622	10578;10622;10676		128.37	42.146	1	7024600			20700	4321	11679	11680	26131;26132;26133	26132		550			-0.005330018031372674
KYGIQMPAF	9	Oxidation (M)	_KYGIQM(Oxidation (M))PAF_		KYGIQM(1)PAF		KYGIQM(130)PAF	0	0	1		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7708129882812	2	535.770603	1069.52665	0.51251	0.00027459	0.24748	0.00013259	0.75998	0.00040718	535.7705715059045	46.732	0.59718	46.785	46.358	46.955	0.052574					70	21	4	0	0	0	0.00056175	3	10544	10502;10544;10588		128.37	45.36	1	5811700			20701	4321	11679	11680	26134;26135;26136	26135		550			-0.005330018031372674
KYGIQMPAF	9	Oxidation (M)	_KYGIQM(Oxidation (M))PAF_		KYGIQM(1)PAF		KYGIQM(96)PAF	0	0	1		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7708129882812	2	535.770603	1069.52665	0.32757	0.0001755	0.030685	1.644E-05	0.35826	0.00019194	535.7705083226949	47.068	0.90726	47.12	46.901	47.808	0.052574					100	33	4	0	0	0	0.0037552	1	10652	10652		96.285	20.524	1	6510100			20702	4321	11679	11680	26137	26137		550			-0.005330018031372674
KYGIQMPAF	9	Oxidation (M)	_KYGIQM(Oxidation (M))PAF_		KYGIQM(1)PAF		KYGIQM(89)PAF	0	0	1		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7706909179688	2	535.770603	1069.52665	0.97547	0.00052263	-0.5209	-0.00027908	0.45457	0.00024355	535.7701367676995	47.114	1.3733	47.169	46.383	47.757	0.054375					164	49	5	0	0	0	0.0046874	1	10651	10651		88.904	26.331	1	7046000			20703	4321	11679	11680	26138	26138		550			-0.005330018031372674
KYGIQMPAF	9	Oxidation (M)	_KYGIQM(Oxidation (M))PAF_		KYGIQM(1)PAF		KYGIQM(110)PAF	0	0	1		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7705078125	2	535.770603	1069.52665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.62	1	46.674	46.174	47.174	0.054371								0	0	0	0.00033624	1	10511	10511		108	50.275	1				20704	4321	11679	11680	26139	26139		550			-0.005330018031372674
KYGIQMPAF	9	Oxidation (M)	_KYGIQM(Oxidation (M))PAF_		KYGIQM(1)PAF		KYGIQM(140)PAF	0	0	1		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.77099609375	2	535.770603	1069.52665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.795	1	46.849	46.349	47.349	0.054371								0	0	0	1.2556E-10	1	10564	10564		141.83	42.071	1				20705	4321	11679	11680	26140	26140		550			-0.005330018031372674
KYGIVLKEF	9	Unmodified	_KYGIVLKEF_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.8236694335938	2	548.823692	1095.63283	0.65036	0.00035694	-0.1202	-6.5969E-05	0.53016	0.00029097	548.8234263954029	48.156	0.59385	48.156	48.012	48.606	0					41	20	3	0	0	0	0.0045319	1	11005	11005		90.135	50.178	1	992650			20706	3221	11680	11681	26141	26141					0.0888407703384928
KYGIVLKEF	9	Unmodified	_KYGIVLKEF_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.823974609375	2	548.823692	1095.63283	0.88928	0.00048806	-0.59865	-0.00032855	0.29063	0.00015951	548.8231606684664	48.078	0.66356	48.126	47.968	48.632	0.047523					49	24	3	0	0	0	0.0045319	1	11003	11003		90.135	50.185	1	870370			20707	3221	11680	11681	26142	26142					0.0888407703384928
KYGIVLKEF	9	Unmodified	_KYGIVLKEF_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8237915039062	2	548.823692	1095.63283	0.70785	0.00038848	-0.35248	-0.00019345	0.35537	0.00019503	548.8232994865178	48.095	0.47184	48.138	47.987	48.458	0.04332					43	17	3	0	0	0	0.0045319	1	10985	10985		90.135	51.959	1	948640			20708	3221	11680	11681	26143	26143					0.0888407703384928
KYGIVQEF	8	Unmodified	_KYGIVQEF_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-3|MTCL2	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.310302734375	2	492.263468	982.512382	0.59231	0.00029157	0.48224	0.00023739	1.0745	0.00052896	492.2634227118823	48.263	0.56957	48.263	48.012	48.582	0					40	19	3	0	0	0	0.14998	1	11077	11077		71.922	19.654	1	832600			20709	4886	11681	11682	26144	26144					0.02042669040235978
KYGIVQEFF	9	Unmodified	_KYGIVQEFF_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-3|MTCL2	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7979125976562	2	565.797675	1129.5808	0.37457	0.00021193	0.10529	5.9574E-05	0.47986	0.0002715	565.7976347967727	66.529	0.98158	66.529	66.211	67.193	0					106	34	5	0	0	0	0.001957	2	16675	16630;16675		110.55	62.207	1	4668000			20710	4886	11682	11683	26145;26146	26146					0.02118913620074636
KYGIVQEFF	9	Unmodified	_KYGIVQEFF_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-3|MTCL2	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.7977905273438	2	565.797675	1129.5808	0.45689	0.0002585	-0.022246	-1.2587E-05	0.43464	0.00024592	565.7976165007303	66.336	1.3566	66.42	66.083	67.44	0.083832					113	48	5	0	0	0	0.001957	2	16625	16577;16625		110.55	70.595	1	4531500			20711	4886	11682	11683	26147;26148	26148					0.02118913620074636
KYGIVQEFF	9	Unmodified	_KYGIVQEFF_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-3|MTCL2	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7979125976562	2	565.797675	1129.5808	0.20393	0.00011538	0.26173	0.00014809	0.46566	0.00026347	565.7977712235412	66.507	1.3665	66.493	66.115	67.481	-0.013596					122	48	5	0	0	0	0.00019464	3	16668	16619;16668;16752		133.05	84.706	1	5598600			20712	4886	11682	11683	26149;26150;26151	26150					0.02118913620074636
KYGLFQHI	8	Unmodified	_KYGLFQHI_					0	0	0		ENSG00000116133|ENST00000371269|DHCR24;nc|ENSG00000116133|Q15392-2|DHCR24	ENSG00000116133|ENST00000371269|DHCR24	ENSG00000116133|ENST00000371269|DHCR24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.29010009765625	2	503.279452	1004.54435	0.31961	0.00016085	-0.61782	-0.00031093	-0.29821	-0.00015008	503.2791286829125	43.156	0.73277	43.156	42.786	43.519	0					49	26	3	0	0	0	0.20518	1	9494	9494		42.095	7.9072	1	392980			20713	2704	11683	11684	26152	26152					0.0422608151403665
KYGLFQHI	8	Unmodified	_KYGLFQHI_					0	0	0		ENSG00000116133|ENST00000371269|DHCR24;nc|ENSG00000116133|Q15392-2|DHCR24	ENSG00000116133|ENST00000371269|DHCR24	ENSG00000116133|ENST00000371269|DHCR24	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	503.279452	1004.54435	0.50479	0.00025405	0.67362	0.00033902	1.1784	0.00059307	503.2796072279776	43.295	0.10617	43.372	43.319	43.425	0.077515	0.1083	0.00096408	NaN	42.095	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95115			20714	2704	11683	11684							0.0422608151403665
KYGLGFQII	9	Unmodified	_KYGLGFQII_					0	0	0		PTPN13|p.P2038Sfs*15|1|0.05|ENSG00000163629|chr4:86784550-86784551|-/CTCCTCTTCTTTCTTA|frameshift_variant;nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	PTPN13|p.P2038Sfs*15|1|0.05|ENSG00000163629|chr4:86784550-86784551|-/CTCCTCTTCTTTCTTA|frameshift_variant	PTPN13|p.P2038Sfs*15|1|0.05|ENSG00000163629|chr4:86784550-86784551|-/CTCCTCTTCTTTCTTA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.802978515625	2	519.80276	1037.59097	0.56031	0.00029125	-2.8796	-0.0014968	-2.3193	-0.0012056	519.8018286853096	66.432	1.44	66.432	65.608	67.048	0					109	47	4	0	0	0	0.12642	1	16600	16600		34.402	12.865	1	834180			20715	5712	11684	11685	26153	26153					0.07367521345327077
KYGLGFQII	9	Unmodified	_KYGLGFQII_					0	0	0		PTPN13|p.P2038Sfs*15|1|0.05|ENSG00000163629|chr4:86784550-86784551|-/CTCCTCTTCTTTCTTA|frameshift_variant;nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13	PTPN13|p.P2038Sfs*15|1|0.05|ENSG00000163629|chr4:86784550-86784551|-/CTCCTCTTCTTTCTTA|frameshift_variant	PTPN13|p.P2038Sfs*15|1|0.05|ENSG00000163629|chr4:86784550-86784551|-/CTCCTCTTCTTTCTTA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.8027954101562	2	519.80276	1037.59097	0.30661	0.00015938	-2.5287	-0.0013144	-2.2221	-0.0011551	519.8020091619392	66.435	1.5288	66.422	65.797	67.325	-0.013588					122	54	4	0	0	0	0.079752	2	16598	16598;16645		41.84	23.705	1	923060			20716	5712	11684	11685	26154;26155	26154					0.07367521345327077
KYGMRFNVI	9	Oxidation (M)	_KYGM(Oxidation (M))RFNVI_		KYGM(1)RFNVI		KYGM(44)RFNVI	0	0	1		ENST00000524332.1_1_8:91054932-91064122:+|nuORF;nc|ENSG00000104325|Q16698-2|DECR1;ENSG00000104325|ENST00000220764|DECR1	ENST00000524332.1_1_8:91054932-91064122:+|nuORF	ENST00000524332.1_1_8:91054932-91064122:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3026733398438	2	572.302601	1142.59065	0.61576	0.0003524	-0.14101	-8.0702E-05	0.47475	0.0002717	572.3024476242318	37.494	1.0546	37.494	37.152	38.206	0					85	37	3	0	0	0	0.07432	1	7728	7728		43.858	14.777	1	1306700			20717	1882	11685	11686	26156	26156		225			0.02505778353815913
KYGMRFNVI	9	Oxidation (M)	_KYGM(Oxidation (M))RFNVI_		KYGM(1)RFNVI		KYGM(59)RFNVI	0	0	1		ENST00000524332.1_1_8:91054932-91064122:+|nuORF;nc|ENSG00000104325|Q16698-2|DECR1;ENSG00000104325|ENST00000220764|DECR1	ENST00000524332.1_1_8:91054932-91064122:+|nuORF	ENST00000524332.1_1_8:91054932-91064122:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.3029174804688	2	572.302601	1142.59065	0.41655	0.00023839	-0.11239	-6.4322E-05	0.30416	0.00017407	572.3025070842021	37.381	1.2534	37.468	37.09	38.343	0.087406					93	45	4	0	0	0	0.034444	1	7725	7725		58.679	8.7458	1	1243300			20718	1882	11685	11686	26157	26157		225			0.02505778353815913
KYGMRFNVI	9	Oxidation (M)	_KYGM(Oxidation (M))RFNVI_		KYGM(1)RFNVI		KYGM(59)RFNVI	0	0	1		ENST00000524332.1_1_8:91054932-91064122:+|nuORF;nc|ENSG00000104325|Q16698-2|DECR1;ENSG00000104325|ENST00000220764|DECR1	ENST00000524332.1_1_8:91054932-91064122:+|nuORF	ENST00000524332.1_1_8:91054932-91064122:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3403930664062	2	572.302601	1142.59065	0.31871	0.0001824	0.19878	0.00011376	0.51749	0.00029616	572.3026845478422	37.322	0.78011	37.415	37.142	37.922	0.093018					76	28	4	0	0	0	0.082808	1	7668	7668		58.679	34.658	1	1249700			20719	1882	11685	11686	26158	26158		225			0.02505778353815913
KYGMVTYLL	9	Oxidation (M)	_KYGM(Oxidation (M))VTYLL_		KYGM(1)VTYLL		KYGM(52)VTYLL	0	0	1		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2940063476562	2	552.293911	1102.57327	0.60867	0.00033617	1.2705	0.00070171	1.8792	0.0010379	552.2937888825219	53.989	0.95612	53.989	53.622	54.578	0					99	34	4	0	0	0	0.05341	1	12777	12777		51.63	24.001	1	1459300			20720	5367	11686	11687	26159	26159		650			0.026084380281417907
KYGNFIDKL	9	Unmodified	_KYGNFIDKL_					0	0	0		ENST00000477972.1_1_7:89976055-89982324:+|nuORF;nc|ENSG00000105793|A4D1E9-3|GTPBP10;nc|ENSG00000105793|A4D1E9-2|GTPBP10;ENSG00000105793|ENST00000222511|GTPBP10	ENST00000477972.1_1_7:89976055-89982324:+|nuORF	ENST00000477972.1_1_7:89976055-89982324:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7770385742188	2	549.303124	1096.5917	0.72146	0.0003963	-0.69541	-0.00038199	0.026048	1.4308E-05	549.3027698317906	45.847	0.7421	45.847	45.452	46.194	0					69	26	4	0	0	0	0.090256	1	10278	10278		57.722	23.62	1	709810			20721	2025	11687	11688	26160	26160					0.04726315994344077
KYGNFIDKL	9	Unmodified	_KYGNFIDKL_					0	0	0		ENST00000477972.1_1_7:89976055-89982324:+|nuORF;nc|ENSG00000105793|A4D1E9-3|GTPBP10;nc|ENSG00000105793|A4D1E9-2|GTPBP10;ENSG00000105793|ENST00000222511|GTPBP10	ENST00000477972.1_1_7:89976055-89982324:+|nuORF	ENST00000477972.1_1_7:89976055-89982324:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3033447265625	2	549.303124	1096.5917	0.67164	0.00036893	-0.18651	-0.00010245	0.48513	0.00026648	549.3029225556551	45.541	0.64783	45.6	45.253	45.9	0.059834					72	22	4	0	0	0	0.038291	1	10164	10164		57.249	26.613	1	891830			20722	2025	11687	11688	26161	26161					0.04726315994344077
KYGNFIDKL	9	Unmodified	_KYGNFIDKL_					0	0	0		ENST00000477972.1_1_7:89976055-89982324:+|nuORF;nc|ENSG00000105793|A4D1E9-3|GTPBP10;nc|ENSG00000105793|A4D1E9-2|GTPBP10;ENSG00000105793|ENST00000222511|GTPBP10	ENST00000477972.1_1_7:89976055-89982324:+|nuORF	ENST00000477972.1_1_7:89976055-89982324:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2630615234375	2	549.303124	1096.5917	0.59275	0.0003256	-0.10966	-6.0234E-05	0.48309	0.00026536	549.303236145658	45.474	0.82183	45.539	45.274	46.096	0.065048					82	29	4	0	0	0	0.067763	1	10161	10161		67.838	29.864	1	608840			20723	2025	11687	11688	26162	26162					0.04726315994344077
KYGNLSNYL	9	Unmodified	_KYGNLSNYL_					0	0	0		ENSG00000102755|ENST00000282397|FLT1;ENST00000451650.1_1_3:46184698-46185163:-|nuORF;nc|ENSG00000102755|P17948-6|FLT1;nc|ENSG00000102755|P17948-5|FLT1	ENSG00000102755|ENST00000282397|FLT1	ENSG00000102755|ENST00000282397|FLT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2691040039062	2	536.277106	1070.53966	0.95901	0.0005143	-0.65642	-0.00035202	0.30259	0.00016227	536.2768458420826	50.312	0.92717	50.357	50.108	51.035	0.044891					71	33	3	0	0	0	0.064268	1	11669	11669		47.594	16.958	1	4653700			20724	1778	11688	11689	26163	26163					0.007211525806042118
KYGNLSNYL	9	Unmodified	_KYGNLSNYL_					0	0	0		ENSG00000102755|ENST00000282397|FLT1;ENST00000451650.1_1_3:46184698-46185163:-|nuORF;nc|ENSG00000102755|P17948-6|FLT1;nc|ENSG00000102755|P17948-5|FLT1	ENSG00000102755|ENST00000282397|FLT1	ENSG00000102755|ENST00000282397|FLT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	536.277106	1070.53966	0.76105	0.00040814	-0.30311	-0.00016255	0.45794	0.00024558	536.2769015981194	50.357	0.92836	50.357	50.05	50.978	0	-0.016197	0.00023724	NaN	47.594	62	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4509000			20725	1778	11688	11689							0.007211525806042118
KYGNLSNYL	9	Unmodified	_KYGNLSNYL_					0	0	0		ENSG00000102755|ENST00000282397|FLT1;ENST00000451650.1_1_3:46184698-46185163:-|nuORF;nc|ENSG00000102755|P17948-6|FLT1;nc|ENSG00000102755|P17948-5|FLT1	ENSG00000102755|ENST00000282397|FLT1	ENSG00000102755|ENST00000282397|FLT1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	536.277106	1070.53966	1.1207	0.00060101	-0.7241	-0.00038832	0.3966	0.00021269	536.2767443302494	50.384	0.90676	50.405	50.095	51.002	0.020691	0.031834	-0.00021429	NaN	47.594	72	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4097100			20726	1778	11688	11689							0.007211525806042118
KYGPFVADF	9	Unmodified	_KYGPFVADF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB;ENST00000567372.1_1_18:65945123-65945423:-|nuORF	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.8003540039062	2	522.263468	1042.51238	0.36975	0.00019311	-0.71516	-0.0003735	-0.34541	-0.0001804	522.2635923968207	59.346	0.47145	59.437	59.156	59.628	0.091305					36	16	3	0	0	0	0.20881	1	14400	14400		27.629	18.246	1	235010			20727	2725	11689	11690	26164	26164					-0.007173309597874322
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENST00000478050.1_1_2:24296944-24299099:-|nuORF;ENSG00000115128|ENST00000233468|SF3B6	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7929992675781	2	487.792727	973.5709	0.48155	0.0002349	-0.056696	-2.7656E-05	0.42486	0.00020724	487.7925278248173	29.245	1.1365	29.245	28.952	30.088	0					83	40	4	0	0	0	0.16948	2	5183	5183;5229		48.346	19.859	1	967450			20728	2608	11690	11691	26165;26166	26165					0.08305770405377189
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENST00000478050.1_1_2:24296944-24299099:-|nuORF;ENSG00000115128|ENST00000233468|SF3B6	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.79278564453125	2	487.792727	973.5709	0.30478	0.00014867	-0.029337	-1.431E-05	0.27544	0.00013436	487.79254014986617	29.164	1.2564	29.177	28.831	30.088	0.012266					87	43	4	0	0	0	0.11736	2	5167	5167;5212		57.471	21.427	1	1065800			20729	2608	11690	11691	26167;26168	26167					0.08305770405377189
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENST00000478050.1_1_2:24296944-24299099:-|nuORF;ENSG00000115128|ENST00000233468|SF3B6	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7928161621094	2	487.792727	973.5709	0.15167	7.3983E-05	0.14696	7.1688E-05	0.29863	0.00014567	487.79266278556366	29.256	1.103	29.269	28.935	30.038	0.013475					81	38	4	0	0	0	0.11736	2	5216	5169;5216		57.471	21.427	1	915910			20730	2608	11690	11691	26169;26170	26170					0.08305770405377189
KYGPVFSF	8	Unmodified	_KYGPVFSF_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.74749755859375	2	472.747453	943.480354	0.21175	0.0001001	0.035564	1.6813E-05	0.24731	0.00011692	472.7473831031717	58.511	1.4617	58.511	58.046	59.508	0					133	50	4	0	0	0	0.0011774	5	14181	14134;14181;14231;14286;14338		141.83	84.355	1	7133000			20731	290	11691	11692	26171;26172;26173;26174;26175	26172					0.006353013570901567
KYGPVFSF	8	Unmodified	_KYGPVFSF_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.74755859375	2	472.747453	943.480354	0.23889	0.00011293	0.014259	6.741E-06	0.25315	0.00011967	472.7473846502139	58.315	1.6487	58.401	57.92	59.568	0.085621					149	58	4	0	0	0	4.1372E-06	6	14120	14074;14120;14170;14216;14263;14315		171.47	104.12	1	7888300			20732	290	11691	11692	26176;26177;26178;26179;26180;26181	26177					0.006353013570901567
KYGPVFSF	8	Unmodified	_KYGPVFSF_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7475280761719	2	472.747453	943.480354	0.50881	0.00024054	-0.32753	-0.00015484	0.18128	8.57E-05	472.74721338193257	58.586	1.557	58.572	57.931	59.488	-0.014267					141	55	4	0	0	0	6.9902E-05	5	14257	14163;14209;14257;14303;14357		156.16	98.685	1	8339500			20733	290	11691	11692	26182;26183;26184;26185;26186	26184					0.006353013570901567
KYGPVVSLL	9	Unmodified	_KYGPVVSLL_					0	0	0		ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.29779052734375	2	488.29731	974.580068	0.36204	0.00017678	0.55117	0.00026913	0.9132	0.00044591	488.29742784977566	58.244	0.8786	58.244	57.953	58.832	0					57	29	3	0	0	0	0.012386	3	14144	14083;14133;14144		75.761	31.903	1	867560			20734	5015	11692	11693	26187;26188;26189	26189					0.0917611897103825
KYGPVVSLL	9	Unmodified	_KYGPVVSLL_					0	0	0		ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.297607421875	2	488.29731	974.580068	0.32634	0.00015935	0.60302	0.00029445	0.92936	0.0004538	488.29748106328435	58.095	0.83118	58.181	57.84	58.671	0.085617					60	29	3	0	0	0	0.059216	1	14083	14083		69.105	25.247	1	966690			20735	5015	11692	11693	26190	26190					0.0917611897103825
KYGPVVSLL	9	Unmodified	_KYGPVVSLL_					0	0	0		ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	ENSG00000152332|ENST00000489294|UHMK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2974548339844	2	488.29731	974.580068	0.64328	0.00031411	0.037384	1.8255E-05	0.68067	0.00033237	488.29724277823874	58.307	0.85142	58.29	57.977	58.829	-0.016899					57	30	3	0	0	0	0.03069	2	14128	14097;14128		60.074	19.324	1	986430			20736	5015	11692	11693	26191;26192	26192					0.0917611897103825
KYGQGFYLI	9	Unmodified	_KYGQGFYLI_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7919311523438	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.46	1	60.46	59.96	60.96	0								0	0	0	0.061409	1	14788	14788		57.471	9.7227	1				20737	1001	11693	11694	26193	26193					0.0299493096565584
KYGQGFYLI	9	Unmodified	_KYGQGFYLI_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7920532226562	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.626	1	60.626	60.126	61.126	0								0	0	0	0.11822	1	14840	14840		42.095	7.6928	1				20738	1001	11693	11694	26194	26194					0.0299493096565584
KYGQGFYLI	9	Unmodified	_KYGQGFYLI_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7918701171875	2	544.792392	1087.57023	0.6196	0.00033755	-0.68657	-0.00037404	-0.066968	-3.6484E-05	544.791636048587	60.392	1.5051	60.487	59.714	61.219	0.095093					118	54	3	0	0	0	0.068501	1	14788	14788		46.021	4.1813	1	4814300			20739	1001	11693	11694	26195	26195					0.0299493096565584
KYGQGFYLI	9	Unmodified	_KYGQGFYLI_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7919921875	2	544.792392	1087.57023	0.85544	0.00046604	-0.85045	-0.00046332	0.0049914	2.7193E-06	544.7916237931133	60.508	1.2211	60.499	59.999	61.22	-0.0094566					94	44	3	0	0	0	0.055495	2	14841	14791;14841		50.855	16.453	1	5525100			20740	1001	11693	11694	26196;26197	26197					0.0299493096565584
KYGRIVEVL	9	Unmodified	_KYGRIVEVL_					0	0	0		ENSG00000170748|ENST00000306904|RBMXL2;nc|ENSG00000147274|P38159-3|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENSG00000213516|ENST00000652648|RBMXL1	ENSG00000170748|ENST00000306904|RBMXL2;nc|ENSG00000147274|P38159-3|RBMX;nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8268432617188	2	538.826766	1075.63898	0.35286	0.00019013	0.17505	9.4322E-05	0.52791	0.00028445	538.8266687223476	42.005	0.48106	42.005	41.825	42.306	0					43	16	4	0	0	0	0.0059482	2	9126	9073;9126		85.642	35.709	1	2017900			20741	4760;12747;6475	11694	11695	26198;26199	26199					0.1041859526535518
KYGRIVEVL	9	Unmodified	_KYGRIVEVL_					0	0	0		ENSG00000170748|ENST00000306904|RBMXL2;nc|ENSG00000147274|P38159-3|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENSG00000213516|ENST00000652648|RBMXL1	ENSG00000170748|ENST00000306904|RBMXL2;nc|ENSG00000147274|P38159-3|RBMX;nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8267822265625	2	538.826766	1075.63898	0.48591	0.00026182	-0.1363	-7.3444E-05	0.34961	0.00018838	538.8264426263833	41.786	0.55619	41.876	41.715	42.271	0.090252					42	22	2	0	0	0	0.0098873	2	9012	9012;9057		79.596	39.647	1	2890900			20742	4760;12747;6475	11694	11695	26200;26201	26200					0.1041859526535518
KYGRIVEVL	9	Unmodified	_KYGRIVEVL_					0	0	0		ENSG00000170748|ENST00000306904|RBMXL2;nc|ENSG00000147274|P38159-3|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENSG00000213516|ENST00000652648|RBMXL1	ENSG00000170748|ENST00000306904|RBMXL2;nc|ENSG00000147274|P38159-3|RBMX;nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8274536132812	2	538.826766	1075.63898	0.82064	0.00044218	0.21612	0.00011645	1.0368	0.00055863	538.8266090044402	41.685	0.58949	41.781	41.645	42.235	0.096626					39	23	2	0	0	0	0.0059482	1	9001	9001		85.642	41.783	1	2633300			20743	4760;12747;6475	11694	11695	26202	26202					0.1041859526535518
KYGSVIQLL	9	Unmodified	_KYGSVIQLL_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.8077392578125	2	510.808042	1019.60153	0.18577	9.4895E-05	0.8057	0.00041156	0.99148	0.00050646	510.8085092848103	61.229	1.3324	61.22	60.572	61.905	-0.0094528					96	48	3	0	0	0	0.059067	1	14955	14955		49.527	13.4	1	4820900			20744	1468	11695	11696	26203	26203					0.09251503999769284
KYGTLQEFSF	10	Unmodified	_KYGTLQEFSF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant;nc|ENSG00000127511|O75182-3|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.302001953125	2	610.303321	1218.59209	0.48486	0.00029591	-0.87915	-0.00053655	-0.39429	-0.00024064	610.3027755066364	60.953	0.51702	60.953	60.764	61.281	0					25	18	2	0	0	0	0.0035575	2	14937	14937;14964		121.93	68.526	1	973650			20745	3324	11696	11697	26204;26205	26204					-0.008463090764280423
KYGTLQEFSF	10	Unmodified	_KYGTLQEFSF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant;nc|ENSG00000127511|O75182-3|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.3026123046875	2	610.303321	1218.59209	0.42507	0.00025942	-0.89026	-0.00054333	-0.46519	-0.00028391	610.3026680624785	60.931	0.46566	61.028	60.807	61.273	0.096985					24	16	2	0	0	0	0.0090622	2	14914	14914;14966		102.55	62.599	1	1436700			20746	3324	11696	11697	26206;26207	26206					-0.008463090764280423
KYGTLQEFSF	10	Unmodified	_KYGTLQEFSF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant;nc|ENSG00000127511|O75182-3|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.3031005859375	2	610.303321	1218.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.179	1	61.169	60.669	61.669	-0.0094566								0	0	0	0.26153	1	15003	15003		36.395	13.247	1				20747	3324	11696	11697	26208	26208					-0.008463090764280423
KYGVAFYNY	9	Unmodified	_KYGVAFYNY_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.2554321289062	2	562.7742	1123.53385	0.30239	0.00017018	0.35625	0.00020049	0.65863	0.00037066	562.7739322758814	52.395	0.56361	52.395	52.123	52.686	0					37	19	3	0	0	0	0.15943	1	12319	12319		39.95	26.044	1	640750			20748	4924	11697	11698	26209	26209					-0.022979459310590755
KYGVAFYNY	9	Unmodified	_KYGVAFYNY_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.2559814453125	2	562.7742	1123.53385	0.39448	0.000222	-0.26749	-0.00015053	0.12699	7.1466E-05	562.7737604019746	52.275	0.62141	52.326	52.06	52.682	0.050575					36	22	2	0	0	0	0.18123	1	12289	12289		34.402	17.289	1	742210			20749	4924	11697	11698	26210	26210					-0.022979459310590755
KYGVFEESL	9	Unmodified	_KYGVFEESL_					0	0	0		ENST00000495668.1_1_11:5664055-5664936:+|nuORF;ENSG00000258659|ENST00000429814|TRIM34	ENST00000495668.1_1_11:5664055-5664936:+|nuORF	ENST00000495668.1_1_11:5664055-5664936:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2713623046875	2	536.27149	1070.52843	0.52646	0.00028232	-0.099198	-5.3197E-05	0.42726	0.00022913	536.2713391017686	51.661	0.88451	51.661	51.354	52.239	0					60	32	2	0	0	0	0.0046246	2	12044	12044;12092		89.401	43.38	1	2257000			20750	8643	11698	11699	26211;26212	26211					-0.004016695135305781
KYGVFEESL	9	Unmodified	_KYGVFEESL_					0	0	0		ENST00000495668.1_1_11:5664055-5664936:+|nuORF;ENSG00000258659|ENST00000429814|TRIM34	ENST00000495668.1_1_11:5664055-5664936:+|nuORF	ENST00000495668.1_1_11:5664055-5664936:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2713623046875	2	536.27149	1070.52843	0.35494	0.00019034	0.085697	4.5957E-05	0.44064	0.0002363	536.2714757769198	51.604	0.73836	51.65	51.401	52.14	0.046574					46	26	2	0	0	0	0.0019475	1	12040	12040		110.67	58.406	1	2167800			20751	8643	11698	11699	26213	26213					-0.004016695135305781
KYGVFEESL	9	Unmodified	_KYGVFEESL_					0	0	0		ENST00000495668.1_1_11:5664055-5664936:+|nuORF;ENSG00000258659|ENST00000429814|TRIM34	ENST00000495668.1_1_11:5664055-5664936:+|nuORF	ENST00000495668.1_1_11:5664055-5664936:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.271728515625	2	536.27149	1070.52843	0.35797	0.00019197	0.14115	7.5696E-05	0.49913	0.00026767	536.271469306437	51.756	0.80922	51.765	51.506	52.315	0.0095673					52	29	2	0	0	0	0.0019475	2	12073	12073;12120		110.67	58.406	1	2150900			20752	8643	11698	11699	26214;26215	26214					-0.004016695135305781
KYGVVIASF	9	Unmodified	_KYGVVIASF_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2984313964844	2	492.28166	982.548768	0.72707	0.00035792	-1.0297	-0.0005069	-0.30263	-0.00014898	492.2814928929416	55.809	0.79934	55.809	55.274	56.074	0					50	28	3	0	0	0	0.019245	1	13392	13392		65.235	36.153	1	821390			20753	3371;10949	11699	11700	26216	26216					0.05679545936936847
KYGVVIASF	9	Unmodified	_KYGVVIASF_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2815856933594	2	492.28166	982.548768	0.6983	0.00034376	-0.78852	-0.00038817	-0.090218	-4.4413E-05	492.28147000903806	55.767	0.8167	55.838	55.371	56.187	0.070885					50	29	3	0	0	0	0.014888	3	13347	13347;13365;13420		71.922	35.878	1	1004200			20754	3371;10949	11699	11700	26217;26218;26219	26217					0.05679545936936847
KYGVVIASF	9	Unmodified	_KYGVVIASF_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2982177734375	2	492.28166	982.548768	0.7494	0.00036892	0.36239	0.0001784	1.1118	0.00054732	492.28167275316076	55.912	0.54293	55.893	55.616	56.159	-0.019077					39	19	3	0	0	0	0.012929	3	13405	13390;13405;13454		74.929	38.885	1	996840			20755	3371;10949	11699	11700	26220;26221;26222	26221					0.05679545936936847
KYHEFQEQQWG	11	Unmodified	_KYHEFQEQQWG_					0	0	0			REV__ENSG00000133789|ENST00000318950|SWAP70	REV__ENSG00000133789|ENST00000318950|SWAP70	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.76690673828125	3	493.893236	1478.65788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.049	1	11.953	11.453	12.453	-0.096607								0	0	0	0.38222	1	13	13		0.094841	0	1		+		20756	15636	11700	11701	26223	26223					-0.06230519901532716
KYHGYPYSF	9	Unmodified	_KYHGYPYSF_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000104723|Q13454-2|TUSC3	ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.2718505859375	2	581.271824	1160.5291	-0.066021	-3.8376E-05	0.87314	0.00050753	0.80712	0.00046915	581.2720456801344	39.278	1.4425	39.278	38.816	40.259	0					140	51	4	0	0	0	6.1526E-05	2	8199	8199;8248		147.06	112.96	1	2389400			20757	12630;1748	11701	11702	26224;26225	26224					-0.04474830073831981
KYHGYPYSF	9	Unmodified	_KYHGYPYSF_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000104723|Q13454-2|TUSC3	ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.2719116210938	2	581.271824	1160.5291	0.15787	9.1765E-05	0.56189	0.00032661	0.71976	0.00041838	581.2718907426262	39.075	1.688	39.168	38.786	40.474	0.09267					133	60	4	0	0	0	6.1526E-05	2	8158	8158;8207		147.06	114.75	1	2945300			20758	12630;1748	11701	11702	26226;26227	26226					-0.04474830073831981
KYHGYPYSF	9	Unmodified	_KYHGYPYSF_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000104723|Q13454-2|TUSC3	ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.2722778320312	2	581.271824	1160.5291	0.39488	0.00022953	0.45761	0.00026599	0.85249	0.00049553	581.2717991965876	39.122	1.5557	39.221	38.76	40.315	0.099407					147	55	4	0	0	0	6.1526E-05	2	8163	8163;8210		147.06	117.98	1	2934800			20759	12630;1748	11701	11702	26228;26229	26228					-0.04474830073831981
KYHIVKQIF	9	Unmodified	_KYHIVKQIF_					0	0	0		ENSG00000138641|ENST00000402738|HERC3;ENST00000470815.1_1_4:89579558-89588530:+|nuORF	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3502807617188	2	588.350409	1174.68626	0.7606	0.0004475	-0.35798	-0.00021062	0.40262	0.00023688	588.3501425442705	37.215	0.72154	37.215	36.985	37.707	0					51	25	3	0	0	0	0.0059482	2	7631	7631;7681		85.642	57.155	1	719330			20760	4171	11702	11703	26230;26231	26230					0.10590874536364936
KYHIVKQIF	9	Unmodified	_KYHIVKQIF_					0	0	0		ENSG00000138641|ENST00000402738|HERC3;ENST00000470815.1_1_4:89579558-89588530:+|nuORF	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.350341796875	2	588.350409	1174.68626	0.39262	0.000231	0.14221	8.3669E-05	0.53483	0.00031467	588.350342508126	37.119	0.71011	37.207	36.924	37.634	0.087406					58	25	3	0	0	0	0.0059482	1	7601	7601		85.642	55.005	1	592130			20761	4171	11702	11703	26232	26232					0.10590874536364936
KYHIVKQIF	9	Unmodified	_KYHIVKQIF_					0	0	0		ENSG00000138641|ENST00000402738|HERC3;ENST00000470815.1_1_4:89579558-89588530:+|nuORF	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.3505859375	2	588.350409	1174.68626	0.54267	0.00031928	-0.19335	-0.00011376	0.34932	0.00020552	588.3502192319709	37.129	0.72724	37.222	36.98	37.707	0.093014					52	26	3	0	0	0	0.0023784	2	7592	7592;7638		107.19	61.166	1	745240			20762	4171	11702	11703	26233;26234	26233					0.10590874536364936
KYHQRVLYI	9	Unmodified	_KYHQRVLYI_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.1543273925781	3	407.236385	1218.68733	0.15406	6.274E-05	-0.074492	-3.0336E-05	0.079572	3.2405E-05	407.2362956126508	32.205	0.70959	32.205	31.953	32.662	0					95	25	5	0	0	0	0.25123	1	6079	6079		12.241	0	1	504580			20763	7884;2727	11703	11704	26235	26235					0.0867308890528875
KYHSLHQR	8	Unmodified	_KYHSLHQR_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.2753295898438	2	534.788507	1067.56246	0.54725	0.00029266	2.4106	0.0012891	2.9578	0.0015818	534.789399585989	40.743	0.32444	40.743	40.55	40.875	0					13	11	2	0	0	0	0.41758	1	8726	8726		16.942	3.0362	1	126300			20764	7983	11704	11705	26236	26236					0.031382164887418185
KYHSSEASFI	10	Unmodified	_KYHSSEASFI_					0	0	0		ENST00000269214.9_1_18:19164274-19180609:-|nuORF	ENST00000269214.9_1_18:19164274-19180609:-|nuORF	ENST00000269214.9_1_18:19164274-19180609:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3133544921875	2	584.785296	1167.55604	0.1382	8.0816E-05	-0.17187	-0.00010051	-0.033675	-1.9693E-05	584.7853547022919	23.62	0.27474	23.548	23.34	23.614	-0.072559					13	9	2	0	0	0	0.32033	1	3515	3515		3.5965	0.31518	1	33774			20765	9074	11705	11706	26237	26237					-0.021037662532762624
KYHYAGSDKW	10	Unmodified	_KYHYAGSDKW_					0	0	0		TRERF1|p.N881K|1|0.32|ENSG00000124496|chr6:42254864-42254864|A/T|missense_variant	TRERF1|p.N881K|1|0.32|ENSG00000124496|chr6:42254864-42254864|A/T|missense_variant	TRERF1|p.N881K|1|0.32|ENSG00000124496|chr6:42254864-42254864|A/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.5751037597656	3	418.86825	1253.58292	-0.11296	-4.7314E-05	0.50954	0.00021343	0.39658	0.00016612	419.20271222429335	25.828	0.95984	25.789	25.442	26.402	-0.038671					49	33	2	0	0	0	0.3213	1	4091	4091		1.9064	0.71303	1	163070			20766	23401	11706	11707	26238	26238					-0.03372657642125887
KYIADFSLF	9	Unmodified	_KYIADFSLF_					0	0	0		ENSG00000177807|ENST00000644903|KCNJ10	ENSG00000177807|ENST00000644903|KCNJ10	ENSG00000177807|ENST00000644903|KCNJ10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.29248046875	2	552.292225	1102.5699	0.55063	0.00030411	0.078882	4.3566E-05	0.62951	0.00034768	552.2922368003178	72.23	1.5461	72.286	71.628	73.174	0.056572					91	56	3	0	0	0	0.020233	1	18382	18382		63.961	22.121	1	854290			20767	7016	11707	11708	26239	26239					0.022715112457944997
KYIADFSLF	9	Unmodified	_KYIADFSLF_					0	0	0		ENSG00000177807|ENST00000644903|KCNJ10	ENSG00000177807|ENST00000644903|KCNJ10	ENSG00000177807|ENST00000644903|KCNJ10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2925415039062	2	552.292225	1102.5699	0.46185	0.00025508	0.28534	0.00015759	0.74719	0.00041267	552.2923644121183	72.326	0.9436	72.298	72.068	73.011	-0.027275					60	33	2	0	0	0	0.0098873	2	18406	18406;18457		79.596	31.848	1	993430			20768	7016	11707	11708	26240;26241	26240					0.022715112457944997
KYIATDFTL	9	Unmodified	_KYIATDFTL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.281005859375	2	536.289682	1070.56481	0.38115	0.00020441	0.52158	0.00027972	0.90274	0.00048413	536.2897574863601	57.517	0.40282	57.603	57.437	57.84	0.085621					34	14	3	0	0	0	0.00078391	1	13888	13888		125.53	73.261	1	1445200			20769	1112	11708	11709	26242	26242					0.0323520738318166
KYIATDFTL	9	Unmodified	_KYIATDFTL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.829345703125	2	536.289682	1070.56481	0.45308	0.00024298	0.62487	0.00033511	1.078	0.00057809	536.2895310206421	57.806	0.85949	57.789	57.582	58.442	-0.017197					48	31	2	0	0	0	0.1335	1	14019	14019		47.594	29.448	1	1394600			20770	1112	11708	11709	26243	26243					0.0323520738318166
KYIDFDHVF	9	Unmodified	_KYIDFDHVF_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8296508789062	2	592.292756	1182.57096	0.44508	0.00026362	0.2994	0.00017733	0.74448	0.00044095	592.2929957607727	58.091	0.79779	58.091	57.798	58.595	0					70	27	4	0	0	0	0.19208	1	14070	14070		33.445	17.598	1	1672200			20771	384	11709	11710	26244	26244					-0.013022743853071006
KYIDFDHVF	9	Unmodified	_KYIDFDHVF_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8296508789062	2	592.292756	1182.57096	0.44614	0.00026424	0.42089	0.00024929	0.86703	0.00051353	592.293079385405	57.884	1.009	57.97	57.63	58.639	0.085621					92	36	5	0	0	0	0.1645	1	13978	13978		40.239	24.392	1	1764500			20772	384	11709	11710	26245	26245					-0.013022743853071006
KYIDFDHVF	9	Unmodified	_KYIDFDHVF_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.8297729492188	2	592.292756	1182.57096	0.68088	0.00040328	-0.077765	-4.606E-05	0.60311	0.00035722	592.2927658935652	58.171	0.7005	58.154	57.928	58.628	-0.0172					72	25	4	0	0	0	0.19208	1	14141	14141		33.445	20.402	1	1925200			20773	384	11709	11710	26246	26246					-0.013022743853071006
KYIDQGIAEL	10	Unmodified	_KYIDQGIAEL_					0	0	0		nc|ENSG00000175792|Q9Y265-2|RUVBL1;ENSG00000175792|ENST00000322623|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.781982421875	2	575.311146	1148.60774	0.024298	1.3979E-05	1.2315	0.00070848	1.2558	0.00072245	575.3118656390512	51.951	0.35023	51.95	51.819	52.169	-0.00081253					20	12	2	0	0	0	0.27735	1	12140	12140		31.636	17.73	1	255520			20774	6884	11710	11711	26247	26247					0.039379774406370416
KYIDQGIAEL	10	Unmodified	_KYIDQGIAEL_					0	0	0		nc|ENSG00000175792|Q9Y265-2|RUVBL1;ENSG00000175792|ENST00000322623|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	nc|ENSG00000175792|Q9Y265-2|RUVBL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	575.311146	1148.60774	0.19905	0.00011451	0.4264	0.00024531	0.62545	0.00035983	575.3115260224422	51.805	0.34717	51.805	51.676	52.023	0	-0.072284	-0.00046375	NaN	44.392	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245500			20775	6884	11710	11711							0.039379774406370416
KYIDQKFVL	9	Unmodified	_KYIDQKFVL_					0	0	0		nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C	nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000078304|Q13362-2|PPP2R5C	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.334228515625	2	577.334424	1152.6543	0.18508	0.00010685	-0.33796	-0.00019512	-0.15289	-8.8266E-05	577.3343075602484	46.592	0.81239	46.592	46.324	47.137	0					60	28	3	0	0	0	2.5511E-05	2	10496	10496;10543		152.89	70.357	1	3017300			20776	2447;1109	11711	11712	26248;26249	26248					0.08407462062564264
KYIDQKFVL	9	Unmodified	_KYIDQKFVL_					0	0	0		nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C	nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000078304|Q13362-2|PPP2R5C	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3344116210938	2	577.334424	1152.6543	0.38921	0.00022471	-0.94425	-0.00054515	-0.55504	-0.00032044	577.3341559120187	46.423	0.92826	46.476	45.944	46.872	0.052574					82	33	5	0	0	0	5.4053E-05	3	10481	10433;10481;10531		148.27	58.867	1	2804700			20777	2447;1109	11711	11712	26250;26251;26252	26251					0.08407462062564264
KYIDQKFVL	9	Unmodified	_KYIDQKFVL_					0	0	0		nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C	nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000078304|Q13362-2|PPP2R5C	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3344116210938	2	577.334424	1152.6543	0.10648	6.1473E-05	-0.58345	-0.00033685	-0.47697	-0.00027537	577.3343420630839	46.478	1.1199	46.532	45.998	47.117	0.054375					90	39	4	0	0	0	2.4752E-08	2	10494	10448;10494		179.17	100.45	1	3274100			20778	2447;1109	11711	11712	26253;26254	26254					0.08407462062564264
KYIDRLIQL	9	Unmodified	_KYIDRLIQL_					0	0	0		ENSG00000196227|ENST00000360816|FAM217B	ENSG00000196227|ENST00000360816|FAM217B	ENSG00000196227|ENST00000360816|FAM217B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.8110961914062	2	581.353148	1160.69174	0.51544	0.00029965	-0.01201	-6.9822E-06	0.50343	0.00029267	581.3533343229941	53.796	0.48182	53.796	53.595	54.076	0					26	17	2	0	0	0	0.21623	1	12773	12773		27.223	11.376	1	223710			20779	7840	11712	11713	26255	26255					0.11782553328202994
KYIDRLIQL	9	Unmodified	_KYIDRLIQL_					0	0	0		ENSG00000196227|ENST00000360816|FAM217B	ENSG00000196227|ENST00000360816|FAM217B	ENSG00000196227|ENST00000360816|FAM217B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.8112182617188	2	581.353148	1160.69174	0.19952	0.00011599	0.065243	3.7929E-05	0.26476	0.00015392	581.3532997132661	53.768	0.36512	53.824	53.638	54.003	0.056255					32	13	3	0	0	0	0.24924	1	12747	12747		14.405	2.7651	1	252600			20780	7840	11712	11713	26256	26256					0.11782553328202994
KYIDRLIQL	9	Unmodified	_KYIDRLIQL_					0	0	0		ENSG00000196227|ENST00000360816|FAM217B	ENSG00000196227|ENST00000360816|FAM217B	ENSG00000196227|ENST00000360816|FAM217B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.8116455078125	2	581.353148	1160.69174	0.43415	0.00025239	0.36064	0.00020966	0.79478	0.00046205	581.3534804434914	53.936	0.48696	53.927	53.771	54.258	-0.0096054					24	17	2	0	0	0	0.24584	1	12772	12772		17.443	10.341	1	271980			20781	7840	11712	11713	26257	26257					0.11782553328202994
KYIEGVSDF	9	Unmodified	_KYIEGVSDF_					0	0	0		nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2638549804688	2	529.263665	1056.51278	0.77755	0.00041153	-0.24098	-0.00012754	0.53657	0.00028399	529.2634499421637	47.348	0.83191	47.348	46.992	47.823	0					72	29	3	0	0	0	0.0041491	1	10782	10782		93.166	34.487	1	2786100			20782	7962	11713	11714	26258	26258					-0.013219560305742561
KYIEGVSDF	9	Unmodified	_KYIEGVSDF_					0	0	0		nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2639770507812	2	529.263665	1056.51278	0.41233	0.00021823	0.15002	7.9399E-05	0.56234	0.00029763	529.2636298327624	47.304	0.73935	47.356	47.038	47.777	0.052574					73	27	3	0	0	0	0.0041491	2	10687	10687;10734		93.166	40.311	1	2809100			20783	7962	11713	11714	26259;26260	26259					-0.013219560305742561
KYIEGVSDF	9	Unmodified	_KYIEGVSDF_					0	0	0		nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2637939453125	2	529.263665	1056.51278	1.0723	0.00056754	-0.57346	-0.00030351	0.49886	0.00026403	529.2632989833221	47.302	0.90002	47.356	47.037	47.937	0.054371					72	33	3	0	0	0	0.0028542	2	10736	10690;10736		103.42	51.151	1	3040400			20784	7962	11713	11714	26261;26262	26262					-0.013219560305742561
KYIESPVLF	9	Unmodified	_KYIESPVLF_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2957153320312	2	548.307875	1094.6012	0.77091	0.0004227	-0.18944	-0.00010387	0.58147	0.00031883	548.3077230721287	60.82	0.63301	60.82	60.495	61.128	0					54	22	4	0	0	0	0.17277	1	14952	14952		27.629	0.74515	1	1659900			20785	1565	11714	11715	26263	26263					0.05768084279884533
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4;nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	ENSG00000069956|ENST00000261845|MAPK6;nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7952880859375	2	522.795466	1043.57638	0.60891	0.00031833	-0.59437	-0.00031074	0.014534	7.5985E-06	522.795066944631	29.055	1.1097	29.055	28.64	29.75	0					126	39	5	0	0	0	0.00024732	4	5139	5139;5189;5240;5294		132.38	73.701	1	3230200			20786	913;1520	11715	11716	26264;26265;26266;26267	26264					0.05633449197171103
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4;nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	ENSG00000069956|ENST00000261845|MAPK6;nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7952270507812	2	522.795466	1043.57638	0.42706	0.00022326	-0.46898	-0.00024518	-0.041921	-2.1916E-05	522.7951163142966	29.024	1.3896	29.037	28.586	29.976	0.012264					124	47	4	0	0	0	0.0016724	4	5153	5153;5204;5257;5331		114.19	55.508	1	3578500			20787	913;1520	11715	11716	26268;26269;26270;26271	26268					0.05633449197171103
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4;nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	ENSG00000069956|ENST00000261845|MAPK6;nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7952270507812	2	522.795466	1043.57638	0.29985	0.00015676	-0.35811	-0.00018722	-0.058251	-3.0453E-05	522.7951819103521	29.043	1.3864	29.056	28.619	30.005	0.013474					126	48	4	0	0	0	0.0011116	5	5138	5138;5180;5224;5272;5344		121.35	65.169	1	3096200			20788	913;1520	11715	11716	26272;26273;26274;26275;26276	26272					0.05633449197171103
KYIIELNHM	9	Oxidation (M)	_KYIIELNHM(Oxidation (M))_		KYIIELNHM(1)		KYIIELNHM(170)	0	0	1		nc|ENSG00000090238|P61236|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF;ENSG00000090238|ENST00000398841|YPEL3	nc|ENSG00000090238|P61236|YPEL3	nc|ENSG00000090238|P61236|YPEL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8078002929688	2	588.807716	1175.60088	0.53437	0.00031464	-0.4694	-0.00027639	0.064966	3.8252E-05	588.8076466341953	37.867	0.8166	37.867	37.503	38.32	0					70	28	3	0	0	0	2.973E-07	1	7828	7828		168.54	114.7	1	699100			20789	1371	11716	11717	26277	26277		171			0.020103412883827332
KYIIELNHM	9	Oxidation (M)	_KYIIELNHM(Oxidation (M))_		KYIIELNHM(1)		KYIIELNHM(170)	0	0	1		nc|ENSG00000090238|P61236|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF;ENSG00000090238|ENST00000398841|YPEL3	nc|ENSG00000090238|P61236|YPEL3	nc|ENSG00000090238|P61236|YPEL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.8079833984375	2	588.807716	1175.60088	0.39561	0.00023294	-0.12971	-7.6373E-05	0.2659	0.00015656	588.8077688236584	37.78	0.84402	37.871	37.555	38.399	0.090881					73	30	3	0	0	0	2.973E-07	1	7793	7793		168.54	124.68	1	670030			20790	1371	11716	11717	26278	26278		171			0.020103412883827332
KYIIELNHM	9	Oxidation (M)	_KYIIELNHM(Oxidation (M))_		KYIIELNHM(1)		KYIIELNHM(170)	0	0	1		nc|ENSG00000090238|P61236|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF;ENSG00000090238|ENST00000398841|YPEL3	nc|ENSG00000090238|P61236|YPEL3	nc|ENSG00000090238|P61236|YPEL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.80810546875	2	588.807716	1175.60088	0.35079	0.00020655	-0.20477	-0.00012057	0.14601	8.5974E-05	588.8079203597325	37.686	0.842	37.784	37.452	38.294	0.097527					83	30	4	0	0	0	2.1945E-07	1	7766	7766		168.54	114.7	1	662280			20791	1371	11716	11717	26279	26279		171			0.020103412883827332
KYIINVKQF	9	Unmodified	_KYIINVKQF_					0	0	0		ENST00000460021.1_1_7:102994369-103002536:+|nuORF;ENSG00000161057|ENST00000292644|PSMC2	ENST00000460021.1_1_7:102994369-103002536:+|nuORF	ENST00000460021.1_1_7:102994369-103002536:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8311767578125	2	576.842416	1151.67028	0.61044	0.00035213	-0.63759	-0.00036779	-0.027145	-1.5659E-05	576.8417255233423	45.342	0.37022	45.402	45.195	45.565	0.059834					17	12	2	0	0	0	0.12563	1	10097	10097		39.95	24.103	1	290670			20792	5507	11717	11718	26280	26280					0.10051168299469282
KYIINVKQF	9	Unmodified	_KYIINVKQF_					0	0	0		ENST00000460021.1_1_7:102994369-103002536:+|nuORF;ENSG00000161057|ENST00000292644|PSMC2	ENST00000460021.1_1_7:102994369-103002536:+|nuORF	ENST00000460021.1_1_7:102994369-103002536:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	576.842416	1151.67028	0.57595	0.00033223	-0.048388	-2.7912E-05	0.52756	0.00030432	576.8424170113049	45.651	0.40781	45.651	45.452	45.86	0	0.1606	0.00016408	NaN	39.95	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195640			20793	5507	11717	11718							0.10051168299469282
KYIKDDFRF	9	Unmodified	_KYIKDDFRF_					0	0	0		ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2204284667969	3	411.220513	1230.63971	-0.30458	-0.00012525	0.31078	0.0001278	0.0061988	2.5491E-06	411.22070509922685	39.803	0.98496	39.803	39.242	40.226	0					96	35	4	0	0	0	0.015535	2	8406	8406;8456		70.929	51.303	1	2057300			20794	1720	11718	11719	26281;26282	26281					0.03361389914380197
KYIKDDFRF	9	Unmodified	_KYIKDDFRF_					0	0	0		ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.3274536132812	2	616.327131	1230.63971	-0.081097	-4.9982E-05	0.17287	0.00010654	0.091771	5.6561E-05	616.3272508827755	39.766	0.48418	39.766	39.54	40.024	0					25	17	2	0	0	0	0.047576	1	8434	8434		49.742	41.586	1	238800			20795	1720	11718	11719	26283	26283					0.03361389914380197
KYIKDDFRF	9	Unmodified	_KYIKDDFRF_					0	0	0		ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.220458984375	3	411.220513	1230.63971	0.13555	5.5739E-05	-0.18232	-7.4973E-05	-0.046771	-1.9233E-05	411.22046538509176	39.537	0.744	39.63	39.307	40.051	0.09267					82	26	4	0	0	0	0.013031	2	8359	8312;8359		74.772	54.191	1	2420200			20796	1720	11718	11719	26284;26285	26285					0.03361389914380197
KYIKDDFRF	9	Unmodified	_KYIKDDFRF_					0	0	0		ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2203369140625	3	411.220513	1230.63971	0.12118	4.9834E-05	-0.15279	-6.283E-05	-0.031605	-1.2997E-05	411.2204768889866	39.594	0.85036	39.693	39.212	40.062	0.099407					87	30	4	0	0	0	0.023171	3	8369	8318;8369;8413		62.869	40.21	1	2908000			20797	1720	11718	11719	26286;26287;26288	26287					0.03361389914380197
KYIKDDFRF	9	Unmodified	_KYIKDDFRF_					0	0	0		ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	616.327131	1230.63971	0.19448	0.00011986	-0.22347	-0.00013773	-0.028996	-1.7871E-05	616.3267947751096	39.589	0.46991	39.689	39.452	39.922	0.099407	-0.038495	-0.00017116	NaN	49.742	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238590			20798	1720	11718	11719							0.03361389914380197
KYILVVPLI	9	Unmodified	_KYILVVPLI_					0	0	0		ENSG00000070366|ENST00000263073|SMG6;nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3547973632812	2	529.354628	1056.6947	0.87255	0.00046189	-0.23786	-0.00012591	0.63469	0.00033598	529.3544819737582	77.675	0.64607	77.675	77.444	78.09	0					50	23	3	0	0	0	0.24581	1	20107	20107		16.942	4.4107	1	442740			20799	921	11719	11720	26289	26289					0.16862428452986933
KYILVVPLI	9	Unmodified	_KYILVVPLI_					0	0	0		ENSG00000070366|ENST00000263073|SMG6;nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3547973632812	2	529.354628	1056.6947	0.78249	0.00041421	-0.23842	-0.00012621	0.54406	0.000288	529.354408695691	77.665	0.6824	77.721	77.43	78.112	0.055412					53	24	3	0	0	0	0.1669	2	20048	20048;20096		28.487	13.153	1	437120			20800	921	11719	11720	26290;26291	26290					0.16862428452986933
KYILVVPLI	9	Unmodified	_KYILVVPLI_					0	0	0		ENSG00000070366|ENST00000263073|SMG6;nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3547973632812	2	529.354628	1056.6947	0.973	0.00051506	-0.31767	-0.00016816	0.65534	0.0003469	529.3544042929122	77.727	0.66193	77.696	77.43	78.092	-0.031334					52	23	3	0	0	0	0.21303	1	20064	20064		21.747	3.6117	1	396130			20801	921	11719	11720	26292	26292					0.16862428452986933
KYINEHSFNNF	11	Unmodified	_KYINEHSFNNF_					0	0	0		nc|ENSG00000173175|O95622-2|ADCY5;ENSG00000173175|ENST00000462833|ADCY5	nc|ENSG00000173175|O95622-2|ADCY5	nc|ENSG00000173175|O95622-2|ADCY5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.55792236328125	3	471.557964	1411.65206	-0.074262	-3.5019E-05	-0.17096	-8.062E-05	-0.24523	-0.00011564	471.5578862319033	41.384	0.46189	41.384	41.069	41.531	0					49	16	4	0	0	0	0.35732	1	8911	8911		16.838	10.604	1	1196300			20802	6699	11720	11721	26293	26293					-0.0372961841317192
KYIPYKYVI	9	Unmodified	_KYIPYKYVI_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8030395507812	2	593.847167	1185.67978	0.18187	0.000108	-0.12538	-7.4456E-05	0.056486	3.3544E-05	593.8470644625166	46.326	0.70155	46.326	46.111	46.813	0					60	25	3	0	0	0	0.09064	1	10398	10398		56.177	29.293	1	1144800			20803	6752	11721	11722	26294	26294					0.09436936584984323
KYIPYKYVI	9	Unmodified	_KYIPYKYVI_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	593.847167	1185.67978	0.26854	0.00015947	0.095334	5.6614E-05	0.36387	0.00021608	593.8470921595522	46.145	0.71094	46.205	45.951	46.662	0.059834	-0.067969	0.00015079	NaN	56.177	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1131300			20804	6752	11721	11722							0.09436936584984323
KYIPYKYVI	9	Unmodified	_KYIPYKYVI_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	593.847167	1185.67978	0.33065	0.00019636	-0.092734	-5.507E-05	0.23792	0.00014129	593.8470523926235	46.223	0.71125	46.288	46.008	46.719	0.065048	0.015343	-7.2577E-05	NaN	56.177	60	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1045600			20805	6752	11721	11722							0.09436936584984323
KYIQEAEML	9	Oxidation (M)	_KYIQEAEM(Oxidation (M))L_		KYIQEAEM(1)L		KYIQEAEM(120)L	0	0	1		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.7847290039062	2	570.783907	1139.55326	-0.098073	-5.5979E-05	0.75266	0.00042961	0.65459	0.00037363	570.7842988500297	39.478	0.80661	39.478	39.189	39.996	0					59	29	3	0	0	0	0.00092088	1	8309	8309		121.53	83.56	1	820730			20806	1665	11722	11723	26295	26295		204			-0.01093357702461617
KYIQEAEML	9	Oxidation (M)	_KYIQEAEM(Oxidation (M))L_		KYIQEAEM(1)L		KYIQEAEM(120)L	0	0	1		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7843627929688	2	570.783907	1139.55326	0.19759	0.00011278	0.50227	0.00028669	0.69986	0.00039947	570.7841384444639	39.312	0.57954	39.405	39.17	39.75	0.09267					52	20	4	0	0	0	0.0010968	1	8302	8302		121.53	83.56	1	957460			20807	1665	11722	11723	26296	26296		204			-0.01093357702461617
KYIQEAEML	9	Oxidation (M)	_KYIQEAEM(Oxidation (M))L_		KYIQEAEM(1)L		KYIQEAEM(62)L	0	0	1		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.7844848632812	2	570.783907	1139.55326	0.28715	0.0001639	0.57448	0.0003279	0.86163	0.0004918	570.7841639112189	39.338	0.71	39.437	39.212	39.922	0.099407					53	25	4	0	0	0	0.026579	1	8323	8323		61.602	25.475	1	1088500			20808	1665	11722	11723	26297	26297		204			-0.01093357702461617
KYIQKPGLL	9	Unmodified	_KYIQKPGLL_					0	0	0		ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.6588745117188	2	530.331685	1058.64882	0.61914	0.00032835	-0.30157	-0.00015993	0.31757	0.00016842	530.3314955520324	35.701	0.28271	35.701	35.547	35.83	0					17	9	2	0	0	0	0.25938	1	7138	7138		4.3292	0.38484	1	296850			20809	7315	11723	11724	26298	26298					0.12183783270756976
KYIQKPGLL	9	Unmodified	_KYIQKPGLL_					0	0	0		ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	ENSG00000182749|ENST00000675840|PAQR7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	530.331685	1058.64882	0.45221	0.00023982	-0.31848	-0.0001689	0.13373	7.0921E-05	530.3316700623543	35.58	0.22545	35.662	35.598	35.823	0.082359	-0.019806	-9.9076E-06	NaN	4.3292	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326370			20810	7315	11723	11724							0.12183783270756976
KYIQRQETI	9	Unmodified	_KYIQRQETI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8302612304688	2	589.830037	1177.64552	0.2984	0.000176	-0.24307	-0.00014337	0.055331	3.2636E-05	589.8300121564256	24.17	0.63169	24.17	23.943	24.575	0					52	21	4	0	0	0	0.013404	2	3692	3645;3692		74.2	49.209	1	433010			20811	5317	11724	11725	26299;26300	26300					0.0638048842608896
KYIQRQETI	9	Unmodified	_KYIQRQETI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8302612304688	2	589.830037	1177.64552	0.37032	0.00021843	-0.31977	-0.00018861	0.050551	2.9816E-05	589.8300501085301	24.363	0.73932	24.29	24.024	24.763	-0.072559					54	24	4	0	0	0	0.013404	1	3756	3756		74.2	50.179	1	504150			20812	5317	11724	11725	26301	26301					0.0638048842608896
KYIQRQETI	9	Unmodified	_KYIQRQETI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8305053710938	2	589.830037	1177.64552	0.27102	0.00015985	-0.31717	-0.00018707	-0.046149	-2.722E-05	589.8300929063939	24.358	0.62111	24.32	24.108	24.73	-0.038927					48	21	4	0	0	0	0.017549	2	3696	3696;3749		67.838	49.692	1	539900			20813	5317	11724	11725	26302;26303	26302					0.0638048842608896
KYISGPHEL	9	Unmodified	_KYISGPHEL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.79541015625	2	522.279649	1042.54475	0.36341	0.0001898	-0.57077	-0.0002981	-0.20736	-0.0001083	522.279271190432	28.858	0.4351	28.854	28.658	29.093	-0.0042572					20	14	2	0	0	0	0.22215	1	5102	5102		20.415	2.9719	1	229090			20814	2807	11725	11726	26304	26304					0.025174564432290936
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENST00000493540.1_1_2:231678823-231682621:+|nuORF;ENSG00000135932|ENST00000258418|CAB39	ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.3085327148438	2	546.308406	1090.60226	0.18119	9.8984E-05	0.0023874	1.3042E-06	0.18357	0.00010029	546.308366716372	27.685	0.83348	27.685	27.408	28.241	0					75	28	4	0	0	0	4.3881E-05	3	4743	4692;4743;4798		149.91	57.423	1	1503800			20815	1770;3923	11726	11727	26305;26306;26307	26306					0.060582986487816015
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENST00000493540.1_1_2:231678823-231682621:+|nuORF;ENSG00000135932|ENST00000258418|CAB39	ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.3084716796875	2	546.308406	1090.60226	0.25751	0.00014068	-0.030007	-1.6393E-05	0.2275	0.00012429	546.3083133699967	27.638	0.96747	27.616	27.349	28.316	-0.021412					83	33	5	0	0	0	2.5511E-05	4	4733	4687;4733;4785;4840		152.89	60.395	1	1538200			20816	1770;3923	11726	11727	26308;26309;26310;26311	26309					0.060582986487816015
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENST00000493540.1_1_2:231678823-231682621:+|nuORF;ENSG00000135932|ENST00000258418|CAB39	ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.3084716796875	2	546.308406	1090.60226	0.21616	0.00011809	0.017276	9.4382E-06	0.23343	0.00012753	546.3083595929037	27.647	1.4194	27.636	27.344	28.764	-0.01156					94	49	4	0	0	0	4.3881E-05	3	4734	4683;4734;4780		149.91	57.423	1	1643600			20817	1770;3923	11726	11727	26312;26313;26314	26313					0.060582986487816015
KYITDVVKL	9	Unmodified	_KYITDVVKL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.F1622Lfs*17|1|0.09|ENSG00000120800|chr12:101346566-101346567|-/TTTAGTATCGTATTCTC|frameshift_variant	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8297119140625	2	539.828975	1077.6434	0.73716	0.00039794	0.28716	0.00015502	1.0243	0.00055296	539.8291582177587	47.889	1.1159	47.889	47.578	48.694	0					93	39	3	0	0	0	2.973E-07	1	10916	10916		168.54	102.08	1	7420200			20818	2965	11727	11728	26315	26315					0.10768059688280118
KYITDVVKL	9	Unmodified	_KYITDVVKL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.F1622Lfs*17|1|0.09|ENSG00000120800|chr12:101346566-101346567|-/TTTAGTATCGTATTCTC|frameshift_variant	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8294677734375	2	539.828975	1077.6434	0.85218	0.00046003	-0.0069031	-3.7265E-06	0.84528	0.0004563	539.829101051851	47.867	1.0761	47.915	47.669	48.745	0.04752					96	39	3	0	0	0	2.2231E-07	1	10904	10904		171.46	94.639	1	6615000			20819	2965	11727	11728	26316	26316					0.10768059688280118
KYITKSFNF	9	Unmodified	_KYITKSFNF_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;PARN|p.H275Lfs*5|1|0.19|ENSG00000140694|chr16:14599920-14599921|-/A|frameshift_variant;ENST00000566021.1_1_16:14704654-14724033:-|nuORF	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.81298828125	2	574.310949	1146.60735	-0.05757	-3.3063E-05	0.50748	0.00029145	0.44991	0.00025839	574.3113003259916	42.455	0.86811	42.455	42.166	43.034	0					89	31	4	0	0	0	0.00012108	1	9200	9200		137.42	76.066	1	2311600			20820	4330	11728	11729	26317	26317					0.03990602511407815
KYITKSFNF	9	Unmodified	_KYITKSFNF_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;PARN|p.H275Lfs*5|1|0.19|ENSG00000140694|chr16:14599920-14599921|-/A|frameshift_variant;ENST00000566021.1_1_16:14704654-14724033:-|nuORF	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.3109741210938	2	574.310949	1146.60735	0.4756	0.00027314	-0.25937	-0.00014896	0.21623	0.00012418	574.31080511693	42.034	0.76994	42.119	41.848	42.618	0.085201					79	27	4	0	0	0	3.4262E-07	2	9123	9075;9123		166.77	101.53	1	2478600			20821	4330	11728	11729	26318;26319	26319					0.03990602511407815
KYITKSFNF	9	Unmodified	_KYITKSFNF_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;PARN|p.H275Lfs*5|1|0.19|ENSG00000140694|chr16:14599920-14599921|-/A|frameshift_variant;ENST00000566021.1_1_16:14704654-14724033:-|nuORF	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.3111572265625	2	574.310949	1146.60735	0.43514	0.00024991	-0.029283	-1.6818E-05	0.40586	0.00023309	574.3109088673831	41.94	0.76978	42.037	41.79	42.559	0.096622					79	26	4	0	0	0	2.2231E-07	3	9095	9051;9095;9148		171.46	96.535	1	2791700			20822	4330	11728	11729	26320;26321;26322	26321					0.03990602511407815
KYITKSFNFY	10	Unmodified	_KYITKSFNFY_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;PARN|p.H275Lfs*5|1|0.19|ENSG00000140694|chr16:14599920-14599921|-/A|frameshift_variant;ENST00000566021.1_1_16:14704654-14724033:-|nuORF	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.5638732910156	3	437.564168	1309.67067	0.023522	1.0292E-05	-0.45242	-0.00019796	-0.4289	-0.00018767	437.56397307973026	47.19	0.9162	47.242	46.955	47.871	0.052574					114	33	5	0	0	0	0.057019	2	10683	10683;10785		57.477	36.896	1	6625500			20823	4330	11729	11730	26323;26324	26323					0.028225432286490104
KYITQGQLL	9	Unmodified	_KYITQGQLL_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3112182617188	2	532.310949	1062.60735	0.82367	0.00043845	-0.30751	-0.00016369	0.51616	0.00027476	532.3107690567126	45.837	1.0338	45.837	45.424	46.458	0					90	37	3	0	0	0	3.6949E-07	3	10317	10225;10273;10317		165.72	76.766	1	8899500			20824	453	11730	11731	26325;26326;26327	26327					0.0785460251142922
KYITQGQLL	9	Unmodified	_KYITQGQLL_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3112182617188	2	532.310949	1062.60735	0.41164	0.00021912	0.2072	0.00011029	0.61884	0.00032941	532.3110159720513	45.616	1.2489	45.676	45.361	46.61	0.059834					110	44	4	0	0	0	3.6949E-07	3	10219	10170;10219;10264		165.72	76.766	1	9120100			20825	453	11730	11731	26328;26329;26330	26329					0.0785460251142922
KYITQGQLL	9	Unmodified	_KYITQGQLL_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3112182617188	2	532.310949	1062.60735	0.6418	0.00034164	-0.070089	-3.7309E-05	0.57171	0.00030433	532.3108993481105	45.653	1.3673	45.718	45.274	46.642	0.065048					113	49	3	0	0	0	2.4752E-08	3	10212	10166;10212;10268		179.17	90.22	1	8924400			20826	453	11730	11731	26331;26332;26333	26332					0.0785460251142922
KYIVNVYQI	9	Unmodified	_KYIVNVYQI_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.32666015625	2	570.326599	1138.63865	0.41574	0.00023711	-0.67857	-0.00038701	-0.26283	-0.0001499	570.3260782601609	56.901	1.1543	56.98	56.437	57.591	0.078674					115	42	4	0	0	0	0.0083926	1	13743	13743		81.89	36.191	1	1786200			20827	2642	11731	11732	26334	26334					0.07487175545520586
KYIVNVYQI	9	Unmodified	_KYIVNVYQI_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	570.326599	1138.63865	0.21995	0.00012545	-0.35287	-0.00020125	-0.13291	-7.5804E-05	570.3263395102871	57.194	1.0652	57.175	56.592	57.657	-0.019077	0.11617	0.00027534	NaN	81.89	101	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1862900			20828	2642	11731	11732							0.07487175545520586
KYIVSGTPTF	10	Unmodified	_KYIVSGTPTF_					0	0	0		nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.8023681640625	2	556.802957	1111.59136	0.36009	0.0002005	-1.1203	-0.00062377	-0.76018	-0.00042327	556.801925439219	49.683	0.56297	49.683	49.462	50.025	0					53	20	4	0	0	0	0.0017481	2	11489	11489;11528		110.79	68.953	1	1443500			20829	1397	11732	11733	26335;26336	26335					0.04002896274505474
KYIVSGTPTF	10	Unmodified	_KYIVSGTPTF_					0	0	0		nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7847290039062	2	556.802957	1111.59136	0.20279	0.00011291	-0.6294	-0.00035045	-0.42662	-0.00023754	556.8022241822699	49.659	0.58428	49.68	49.429	50.014	0.020691					57	21	4	0	0	0	0.040516	1	11498	11498		61.09	41.833	1	1434500			20830	1397	11732	11733	26337	26337					0.04002896274505474
KYIYQTLFL	9	Unmodified	_KYIYQTLFL_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1;ENST00000468386.2_1_2:70057024-70067283:+|nuORF;ENSG00000244234|ENST00000463439|GMCL2	ENSG00000087338|ENST00000282570|GMCL1;ENSG00000244234|ENST00000463439|GMCL2	ENSG00000244234|ENST00000463439|GMCL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.2174682617188	2	594.8368	1187.65905	0.49744	0.0002959	-0.35424	-0.00021072	0.1432	8.5179E-05	594.8366449426475	71.264	0.36372	71.264	71.128	71.491	0					20	12	2	0	0	0	0.2422	1	18144	18144		19.362	3.5148	1	288920			20831	1305;8568	11733	11734	26338	26338					0.07272346205309077
KYIYQTLFL	9	Unmodified	_KYIYQTLFL_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1;ENST00000468386.2_1_2:70057024-70067283:+|nuORF;ENSG00000244234|ENST00000463439|GMCL2	ENSG00000087338|ENST00000282570|GMCL1;ENSG00000244234|ENST00000463439|GMCL2	ENSG00000244234|ENST00000463439|GMCL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7669677734375	2	594.8368	1187.65905	0.46881	0.00027887	-0.0024352	-1.4485E-06	0.46638	0.00027742	594.8365553917407	71.243	0.39986	71.304	71.117	71.517	0.060783					27	13	3	0	0	0	0.17263	1	18134	18134		38.615	26.374	1	345730			20832	1305;8568	11733	11734	26339	26339					0.07272346205309077
KYIYQTLFL	9	Unmodified	_KYIYQTLFL_					0	0	0		ENSG00000087338|ENST00000282570|GMCL1;ENST00000468386.2_1_2:70057024-70067283:+|nuORF;ENSG00000244234|ENST00000463439|GMCL2	ENSG00000087338|ENST00000282570|GMCL1;ENSG00000244234|ENST00000463439|GMCL2	ENSG00000244234|ENST00000463439|GMCL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.361328125	2	594.8368	1187.65905	0.5029	0.00029914	-0.31492	-0.00018732	0.18798	0.00011182	594.8366916753101	71.346	0.44577	71.321	71.159	71.605	-0.024864					26	15	2	0	0	0	0.2422	1	18101	18101		19.362	12.073	1	427100			20833	1305;8568	11733	11734	26340	26340					0.07272346205309077
KYKAPGEEFF	10	Unmodified	_KYKAPGEEFF_					0	0	0		ENSG00000161036|ENST00000292616|LRWD1	ENSG00000161036|ENST00000292616|LRWD1	ENSG00000161036|ENST00000292616|LRWD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.3319702148438	2	608.305864	1214.59717	0.37645	0.000229	-0.69558	-0.00042313	-0.31913	-0.00019413	608.3052686412567	43.607	0.32638	43.607	43.414	43.741	0					24	11	3	0	0	0	0.31396	1	9603	9603		18.373	11.65	1	226580			20834	5506	11734	11735	26341	26341					-0.0015400521383526211
KYKDAANLL	9	Unmodified	_KYKDAANLL_					0	0	0		nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2955322265625	2	518.295299	1034.57605	0.64862	0.00033618	-0.20896	-0.0001083	0.43966	0.00022787	518.2950856762659	32.418	0.77921	32.418	32.145	32.924	0					62	27	3	0	0	0	0.063898	1	6169	6169		47.732	7.4928	1	539660			20835	3259	11735	11736	26342	26342					0.06014029477319127
KYKDAANLL	9	Unmodified	_KYKDAANLL_					0	0	0		nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.29541015625	2	518.295299	1034.57605	0.62809	0.00032554	-0.22721	-0.00011776	0.40088	0.00020778	518.2950954987315	32.349	0.74307	32.404	32.097	32.84	0.055309					58	26	3	0	0	0	0.032589	1	6141	6141		59.368	17.413	1	609980			20836	3259	11735	11736	26343	26343					0.06014029477319127
KYKDAANLL	9	Unmodified	_KYKDAANLL_					0	0	0		nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2955932617188	2	518.295299	1034.57605	0.32873	0.00017038	-0.069524	-3.6034E-05	0.2592	0.00013434	518.2952074401373	32.311	0.71429	32.365	32.103	32.818	0.054375					56	25	3	0	0	0	0.053988	3	6159	6122;6159;6169		51.415	16.483	1	542260			20837	3259	11735	11736	26344;26345;26346	26345					0.06014029477319127
KYKDQPQQTF	10	Unmodified	_KYKDQPQQTF_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8245849609375	2	641.824952	1281.63535	0.21171	0.00013588	0.1101	7.0663E-05	0.32181	0.00020655	641.8248069035807	23.512	0.36298	23.512	23.336	23.699	0					28	12	3	0	0	0	0.2361	1	3473	3473		28.234	17.434	1	77857			20838	423	11736	11737	26347	26347					0.00579880700843205
KYKDQPQQTF	10	Unmodified	_KYKDQPQQTF_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8253173828125	2	641.824952	1281.63535	0.36956	0.00023719	-0.28079	-0.00018022	0.088769	5.6974E-05	641.824746194525	23.679	0.45655	23.606	23.396	23.852	-0.072559					27	15	2	0	0	0	0.29048	1	3545	3545		21.59	13.435	1	61739			20839	423	11736	11737	26348	26348					0.00579880700843205
KYKDQPQQTF	10	Unmodified	_KYKDQPQQTF_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8245849609375	2	641.824952	1281.63535	0.55084	0.00035354	-0.23402	-0.0001502	0.31682	0.00020334	641.8244496071568	23.661	0.48873	23.622	23.42	23.909	-0.038927					25	16	2	0	0	0	0.33753	1	3533	3533		14.957	7.8554	1	68741			20840	423	11736	11737	26349	26349					0.00579880700843205
KYKDSSGRQL	10	Unmodified	_KYKDSSGRQL_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.3171997070312	2	591.317294	1180.62004	0.31509	0.00018632	0.076101	4.5E-05	0.39119	0.00023132	591.3172051724947	26.641	0.49159	26.641	26.379	26.871	0					34	16	3	0	0	0	0.37454	1	4419	4419		8.1555	2.8586	1	147090			20841	12692	11737	11738	26350	26350					0.03695013903666222
KYKDSSGRQL	10	Unmodified	_KYKDSSGRQL_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	591.317294	1180.62004	0.32549	0.00019247	-0.049384	-2.9201E-05	0.27611	0.00016327	591.3173124085016	26.612	0.36905	26.573	26.402	26.771	-0.038671	-0.037693	5.3825E-05	NaN	8.1555	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169390			20842	12692	11737	11738							0.03695013903666222
KYKDSSGRQL	10	Unmodified	_KYKDSSGRQL_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	591.317294	1180.62004	0.55564	0.00032856	-0.36762	-0.00021738	0.18802	0.00011118	591.317061310267	26.64	0.40144	26.618	26.439	26.841	-0.022238	0.0072043	-0.00032253	NaN	8.1555	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211210			20843	12692	11737	11738							0.03695013903666222
KYKEAAHLL	9	Unmodified	_KYKEAAHLL_					0	0	0		nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4;nc|ENSG00000137171|Q9NSK0-4|KLC4;ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000174996|ENST00000394067|KLC2	nc|ENSG00000137171|Q9NSK0-5|KLC4	nc|ENSG00000137171|Q9NSK0-5|KLC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.3019409179688	2	536.811116	1071.60768	0.3331	0.00017881	-0.061232	-3.287E-05	0.27187	0.00014594	536.8109224922778	23.719	0.68597	23.719	23.448	24.134	0					40	23	3	0	0	0	0.21447	1	3581	3581		21.537	7.6309	1	237040			20844	4032	11738	11739	26351	26351					0.07474022231258459
KYKEAAHLL	9	Unmodified	_KYKEAAHLL_					0	0	0		nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4;nc|ENSG00000137171|Q9NSK0-4|KLC4;ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000174996|ENST00000394067|KLC2	nc|ENSG00000137171|Q9NSK0-5|KLC4	nc|ENSG00000137171|Q9NSK0-5|KLC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.3019409179688	2	536.811116	1071.60768	0.30136	0.00016177	0.044856	2.4079E-05	0.34622	0.00018585	536.8109707599797	23.883	0.93915	23.81	23.448	24.387	-0.072559					50	31	3	0	0	0	0.25112	1	3631	3631		16.149	3.9084	1	218240			20845	4032	11738	11739	26352	26352					0.07474022231258459
KYKEAAHLL	9	Unmodified	_KYKEAAHLL_					0	0	0		nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4;nc|ENSG00000137171|Q9NSK0-4|KLC4;ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000174996|ENST00000394067|KLC2	nc|ENSG00000137171|Q9NSK0-5|KLC4	nc|ENSG00000137171|Q9NSK0-5|KLC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.3018798828125	2	536.811116	1071.60768	0.56627	0.00030398	-0.35358	-0.0001898	0.21269	0.00011417	536.8107958929947	23.886	0.71638	23.847	23.562	24.278	-0.038927					41	24	3	0	0	0	0.25714	1	3632	3632		15.248	0.41021	1	208570			20846	4032	11738	11739	26353	26353					0.07474022231258459
KYKEDEPLF	9	Unmodified	_KYKEDEPLF_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.7980346679688	2	584.797872	1167.58119	0.4256	0.00024889	-0.17936	-0.00010489	0.24624	0.000144	584.7978402682851	36.432	0.56874	36.432	36.307	36.875	0					37	19	3	0	0	0	0.053988	1	7444	7444		51.415	29.878	1	411300			20847	5158	11739	11740	26354	26354					0.0041028854927844804
KYKEDEPLF	9	Unmodified	_KYKEDEPLF_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.7974243164062	2	584.797872	1167.58119	0.4153	0.00024287	-0.37021	-0.0002165	0.045094	2.6371E-05	584.797642412605	36.372	0.55486	36.455	36.202	36.757	0.082355					38	19	3	0	0	0	0.032589	1	7367	7367		59.368	37.831	1	482850			20848	5158	11739	11740	26355	26355					0.0041028854927844804
KYKEDEPLF	9	Unmodified	_KYKEDEPLF_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.7979125976562	2	584.797872	1167.58119	0.72978	0.00042677	-1.6248	-0.00095016	-0.89498	-0.00052338	584.7974591613395	36.265	0.58777	36.351	36.196	36.783	0.08625					44	20	3	0	0	0	0.015924	1	7368	7368		70.332	28.492	1	500190			20849	5158	11739	11740	26356	26356					0.0041028854927844804
KYKESKIFT	9	Unmodified	_KYKESKIFT_					0	0	0			REV__nc|ENSG00000133302|Q9BQI6-2|SLF1	REV__nc|ENSG00000133302|Q9BQI6-2|SLF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3245239257812	2	572.324057	1142.63356	-0.15891	-9.0947E-05	0.45856	0.00026244	0.29965	0.00017149	572.3244496756591	13.158	0.78099	13.09	12.819	13.6	-0.067496					81	27	5	0	0	0	0.34923	1	414	414		1.4819	0	1	1189800	+		20850	15616	11740	11741	26357	26357					0.06794871682882331
KYKGIFNGF	9	Unmodified	_KYKGIFNGF_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547908.1_1_12:98989476-98991822:+|nuORF	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2925415039062	2	537.292559	1072.57057	0.4911	0.00026387	-0.35244	-0.00018936	0.13867	7.4505E-05	537.2922944488045	46.642	1.3338	46.642	46.324	47.658	0					91	47	2	0	0	0	4.6984E-11	2	10535	10488;10535		187.93	130.46	1	6771000			20851	1046	11741	11742	26358;26359	26359					0.0371835068551718
KYKGIFNGF	9	Unmodified	_KYKGIFNGF_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547908.1_1_12:98989476-98991822:+|nuORF	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2922973632812	2	537.292559	1072.57057	0.35031	0.00018822	-1.14	-0.00061254	-0.78974	-0.00042432	537.2922218953336	46.279	1.2943	46.338	45.984	47.278	0.059837					153	47	5	0	0	0	2.0431E-11	2	10382	10382;10437		196.65	132.41	1	8750100			20852	1046	11741	11742	26360;26361	26360					0.0371835068551718
KYKGIFNGF	9	Unmodified	_KYKGIFNGF_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547908.1_1_12:98989476-98991822:+|nuORF	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2954711914062	2	537.292559	1072.57057	0.48069	0.00025827	0.40866	0.00021957	0.88935	0.00047784	537.2926904541879	67.9	1.5742	67.978	67.213	68.788	0.078041					115	56	3	0	0	0	0.28128	1	16870	16870		11.64	2.2929	1	2699000			20853	1046	11741	11742	26362	26362					0.0371835068551718
KYKGIFNGF	9	Unmodified	_KYKGIFNGF_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENST00000547908.1_1_12:98989476-98991822:+|nuORF	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.292236328125	2	537.292559	1072.57057	0.38541	0.00020708	-1.1804	-0.00063424	-0.79502	-0.00042716	537.2921832145217	46.316	1.5748	46.382	45.951	47.526	0.065048					175	56	5	0	0	0	2.0431E-11	3	10417	10369;10417;10459		196.65	132.41	1	9420500			20854	1046	11741	11742	26363;26364;26365	26364					0.0371835068551718
KYKNSEINFSF	11	Unmodified	_KYKNSEINFSF_					0	0	0		ENSG00000163644|ENST00000608933|PPM1K	ENSG00000163644|ENST00000608933|PPM1K	ENSG00000163644|ENST00000608933|PPM1K	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.56658935546875	3	459.566348	1375.67722	0.30438	0.00013989	-0.059723	-2.7447E-05	0.24466	0.00011244	459.56642307753054	48.164	0.51729	48.164	47.987	48.504	0					40	17	3	0	0	0	0.40129	1	11010	11010		11.065	2.7788	1	793850			20855	5714	11742	11743	26366	26366					0.004404363893854679
KYKNSEINFSF	11	Unmodified	_KYKNSEINFSF_					0	0	0		ENSG00000163644|ENST00000608933|PPM1K	ENSG00000163644|ENST00000608933|PPM1K	ENSG00000163644|ENST00000608933|PPM1K	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	459.566348	1375.67722	0.49367	0.00022687	-0.23356	-0.00010734	0.26011	0.00011954	459.56628919019965	48.055	0.49973	48.103	47.945	48.444	0.047523	-0.025442	-0.00018592	NaN	11.065	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	685020			20856	5714	11742	11743							0.004404363893854679
KYKNSEINFSF	11	Unmodified	_KYKNSEINFSF_					0	0	0		ENSG00000163644|ENST00000608933|PPM1K	ENSG00000163644|ENST00000608933|PPM1K	ENSG00000163644|ENST00000608933|PPM1K	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	459.566348	1375.67722	0.4	0.00018383	-0.012235	-5.6228E-06	0.38776	0.0001782	459.5664047008469	48.074	0.50369	48.117	47.926	48.43	0.04332	-0.010631	0.00011922	NaN	11.065	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	926210			20857	5714	11742	11743							0.004404363893854679
KYKPAVNQI	9	Unmodified	_KYKPAVNQI_					0	0	0		ENSG00000085662|ENST00000285930|AKR1B1;ENST00000498771.5_1_7:134132683-134136556:-|nuORF	ENSG00000085662|ENST00000285930|AKR1B1;ENST00000498771.5_1_7:134132683-134136556:-|nuORF	ENST00000498771.5_1_7:134132683-134136556:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.8115844726562	2	530.811116	1059.60768	0.46432	0.00024647	-0.68772	-0.00036505	-0.22341	-0.00011859	530.8105297209424	24.926	0.47471	24.926	24.736	25.21	0					33	16	3	0	0	0	0.07432	1	3883	3883		43.858	11.553	1	168840			20858	1260;11257	11743	11744	26367	26367					0.0802602223127451
KYKPAVNQI	9	Unmodified	_KYKPAVNQI_					0	0	0		ENSG00000085662|ENST00000285930|AKR1B1;ENST00000498771.5_1_7:134132683-134136556:-|nuORF	ENSG00000085662|ENST00000285930|AKR1B1;ENST00000498771.5_1_7:134132683-134136556:-|nuORF	ENST00000498771.5_1_7:134132683-134136556:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.8107299804688	2	530.811116	1059.60768	0.25017	0.00013279	-0.43441	-0.00023059	-0.18424	-9.7795E-05	530.8105297071485	25.029	0.46733	24.973	24.719	25.186	-0.055931					35	16	3	0	0	0	0.041175	1	3915	3915		56.177	20.05	1	161840			20859	1260;11257	11743	11744	26368	26368					0.0802602223127451
KYKPAVNQI	9	Unmodified	_KYKPAVNQI_					0	0	0		ENSG00000085662|ENST00000285930|AKR1B1;ENST00000498771.5_1_7:134132683-134136556:-|nuORF	ENSG00000085662|ENST00000285930|AKR1B1;ENST00000498771.5_1_7:134132683-134136556:-|nuORF	ENST00000498771.5_1_7:134132683-134136556:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.810791015625	2	530.811116	1059.60768	0.1235	6.5554E-05	-0.57732	-0.00030645	-0.45382	-0.00024089	530.8106017358365	24.968	0.50106	24.937	24.653	25.154	-0.031408					35	16	3	0	0	0	0.22061	1	3924	3924		24.021	13.947	1	166620			20860	1260;11257	11743	11744	26369	26369					0.0802602223127451
KYKPRMNEL	9	Unmodified	_KYKPRMNEL_					0	0	0		ENST00000552741.5_1_12:82868290-82872800:+|nuORF;ENST00000551645.1_1_12:82870329-82872800:+|nuORF;ENST00000548432.5_1_12:82832322-82872800:+|nuORF;ENSG00000127720|ENST00000248306|METTL25	ENST00000552741.5_1_12:82868290-82872800:+|nuORF	ENST00000552741.5_1_12:82868290-82872800:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8303833007812	2	589.821158	1177.62776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.299	1	24.227	23.727	24.727	-0.072559								0	0	0	0.19534	1	3711	3711		24.021	2.4836	1				20861	3334	11744	11745	26370	26370					0.04605449899577252
KYKRWFIFLL	10	Unmodified	_KYKRWFIFLL_					0	0	0		ENST00000409673.7_1_2:175260533-175263141:+|nuORF	ENST00000409673.7_1_2:175260533-175263141:+|nuORF	ENST00000409673.7_1_2:175260533-175263141:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.95196533203125	3	471.951697	1412.83326	-0.23424	-0.00011055	0.65014	0.00030683	0.4159	0.00019629	471.952026984187	97.58	0.84684	97.58	97.268	98.115	0					304	91	5	0	0	0	0.41469	1	26143	26143		0.77653	0.77653	1	974270			20862	10255	11745	11746	26371	26371					0.14335971421314753
KYKSGIKST	9	Unmodified	_KYKSGIKST_					0	0	0		ENSG00000164323|ENST00000458385|CFAP97;nc|ENSG00000164323|Q9P2B7-2|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	ENSG00000164323|ENST00000458385|CFAP97	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2556457519531	2	506.295299	1010.57605	0.083993	4.2525E-05	1.8599	0.00094165	1.9439	0.00098418	506.7982117647661	15.458	0.31829	15.348	15.23	15.549	-0.10981					13	10	2	0	0	0	0.25843	1	1041	1041		5.7319	1.4026	1	29730			20863	5830	11746	11747	26372	26372					0.0711802947733986
KYLADLPTL	9	Unmodified	_KYLADLPTL_					0	0	0		ENSG00000111860|ENST00000368491|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7614135742188	2	517.30005	1032.58555	0.21951	0.00011355	1.0661	0.0005515	1.2856	0.00066506	517.3005026411821	61.661	0.80318	61.661	61.281	62.084	0					70	29	3	0	0	0	0.16853	1	15244	15244		31.268	10.854	1	1292500			20864	2396	11747	11748	26373	26373					0.07055797762859584
KYLADLPTL	9	Unmodified	_KYLADLPTL_					0	0	0		ENSG00000111860|ENST00000368491|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	ENSG00000111860|ENST00000368491|CEP85L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7612915039062	2	517.30005	1032.58555	-0.0913	-4.7229E-05	1.3036	0.00067437	1.2123	0.00062714	517.3006353234389	61.545	0.7588	61.642	61.299	62.058	0.096985					62	27	3	0	0	0	0.075356	1	15208	15208		33.445	3.6043	1	1058400			20865	2396	11747	11748	26374	26374					0.07055797762859584
KYLAHLEQL	9	Unmodified	_KYLAHLEQL_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8167114257812	2	557.816399	1113.61824	0.26346	0.00014696	-0.21765	-0.00012141	0.04581	2.5554E-05	557.8161591258266	40.804	0.75401	40.804	40.526	41.28	0					70	27	3	0	0	0	0.00012746	2	8722	8722;8773		136.39	50.751	1	1341000			20866	5595	11748	11749	26375;26376	26375					0.06598004885699993
KYLAHLEQL	9	Unmodified	_KYLAHLEQL_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.8164672851562	2	557.816399	1113.61824	0.50196	0.00028	-0.48042	-0.00026799	0.021535	1.2013E-05	557.8159292598134	40.483	1.0718	40.576	40.254	41.326	0.09267					81	37	4	0	0	0	3.4202E-05	3	8617	8617;8665;8693		151.48	51.725	1	1458100			20867	5595	11748	11749	26377;26378;26379	26377					0.06598004885699993
KYLAHLEQL	9	Unmodified	_KYLAHLEQL_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.8167724609375	2	557.816399	1113.61824	0.3345	0.00018659	-0.30778	-0.00017168	0.026725	1.4908E-05	557.816080261251	40.448	0.97464	40.547	40.288	41.262	0.099407					77	35	4	0	0	0	4.1496E-11	2	8608	8608;8656		189.73	79.057	1	1600800			20868	5595	11748	11749	26380;26381	26380					0.06598004885699993
KYLAILGSVTF	11	Unmodified	_KYLAILGSVTF_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3558349609375	2	606.355357	1210.69616	0.62078	0.00037641	0.14089	8.5427E-05	0.76166	0.00046184	606.3553600885334	75.041	0.60242	75.041	74.847	75.449	0					31	21	2	0	0	0	0.0023951	1	19278	19278		85.764	64.174	1	422220			20869	2840	11749	11750	26382	26382					0.09924017751086467
KYLAILGSVTF	11	Unmodified	_KYLAILGSVTF_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.355224609375	2	606.355357	1210.69616	0.52345	0.00031739	-0.073993	-4.4866E-05	0.44945	0.00027253	606.3552201499364	74.999	0.48557	75.051	74.89	75.375	0.052368					43	17	3	0	0	0	0.036631	1	19256	19256		57.108	40.958	1	386910			20870	2840	11749	11750	26383	26383					0.09924017751086467
KYLAILGSVTF	11	Unmodified	_KYLAILGSVTF_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3553466796875	2	606.355357	1210.69616	0.60792	0.00036861	-0.17484	-0.00010602	0.43307	0.0002626	606.3552370794333	75.147	0.47343	75.116	74.893	75.367	-0.031487					38	17	3	0	0	0	0.036631	1	19296	19296		57.108	40.958	1	387020			20871	2840	11749	11750	26384	26384					0.09924017751086467
KYLAKNSATLF	11	Unmodified	_KYLAKNSATLF_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.7827758789062	2	628.355888	1254.69722	-0.0055968	-3.5168E-06	0.32605	0.00020488	0.32045	0.00020136	628.3562553786523	39.139	0.38528	39.139	38.988	39.373	0					19	13	2	0	0	0	0.32717	1	8236	8236		24.957	12.782	1	201320			20872	7557	11750	11751	26385	26385					0.08006232119987544
KYLAKNSATLF	11	Unmodified	_KYLAKNSATLF_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	628.7828979492188	2	628.355888	1254.69722	-0.03127	-1.9649E-05	0.32548	0.00020452	0.29421	0.00018487	628.3562711775372	39.017	0.44223	39.11	38.974	39.416	0.09267					23	15	3	0	0	0	0.32616	1	8222	8222		27.088	18.343	1	285570			20873	7557	11750	11751	26386	26386					0.08006232119987544
KYLAKNSATLF	11	Unmodified	_KYLAKNSATLF_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.7828369140625	2	628.355888	1254.69722	0.39482	0.00024809	-0.045521	-2.8603E-05	0.3493	0.00021948	628.3558867629783	38.977	0.33844	39.076	38.953	39.292	0.099407					19	11	2	0	0	0	0.32342	1	8172	8172		32.898	14.525	1	264340			20874	7557	11750	11751	26387	26387					0.08006232119987544
KYLATLETL	9	Unmodified	_KYLATLETL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.L722Wfs*49|1|0.27|ENSG00000162434|chr1:64844841-64844841|G/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3054809570312	2	526.305332	1050.59611	0.79164	0.00041665	-0.64871	-0.00034142	0.14293	7.5225E-05	526.3050461143021	54.366	1.0615	54.366	53.946	55.008	0					102	38	4	0	0	0	0.00012108	3	12882	12882;12933;12979		137.42	79.508	1	5296200			20875	5572	11751	11752	26388;26389;26390	26388					0.07283780417287744
KYLATLETL	9	Unmodified	_KYLATLETL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.L722Wfs*49|1|0.27|ENSG00000162434|chr1:64844841-64844841|G/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3055419921875	2	526.305332	1050.59611	0.70163	0.00036927	-0.70768	-0.00037245	-0.0060475	-3.1829E-06	526.3051013348276	54.325	1.2263	54.389	53.93	55.157	0.063202					120	45	4	0	0	0	0.00012108	3	12865	12865;12913;12965		137.42	89.675	1	5137800			20876	5572	11751	11752	26391;26392;26393	26391					0.07283780417287744
KYLATLETL	9	Unmodified	_KYLATLETL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.L722Wfs*49|1|0.27|ENSG00000162434|chr1:64844841-64844841|G/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3056030273438	2	526.305332	1050.59611	0.76706	0.00040371	-0.74086	-0.00038992	0.026196	1.3787E-05	526.3050686511373	54.588	1.2632	54.572	54.03	55.293	-0.015923					122	45	4	0	0	0	4.3881E-05	3	12942	12942;12990;13045		149.91	91.235	1	4953900			20877	5572	11751	11752	26394;26395;26396	26394					0.07283780417287744
KYLDALNVF	9	Unmodified	_KYLDALNVF_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7738647460938	2	541.797675	1081.5808	0.47294	0.00025624	1.1155	0.00060439	1.5885	0.00086063	541.7984138634599	67.574	0.85503	67.574	67.193	68.048	0					58	29	3	0	0	0	0.20381	1	17017	17017		29.841	10.584	1	695730			20878	6071	11752	11753	26397	26397					0.04326913620070627
KYLDALNVF	9	Unmodified	_KYLDALNVF_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.79833984375	2	541.797675	1081.5808	0.57363	0.00031079	1.8646	0.0010103	2.4383	0.0013211	541.799099213814	67.479	1.3684	67.557	67.122	68.49	0.078041					80	48	3	0	0	0	0.09758	1	16953	16953		38.615	13.624	1	784420			20879	6071	11752	11753	26398	26398					0.04326913620070627
KYLDEDTIYHL	11	Unmodified	_KYLDEDTIYHL_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.5697326660156	3	470.569759	1408.68745	0.30381	0.00014296	-0.11498	-5.4106E-05	0.18883	8.8857E-05	470.56965015258754	53.839	0.67176	53.839	53.568	54.24	0					71	24	4	0	0	0	0.012355	1	12736	12736		64.688	55.444	1	1671200			20880	6309	11753	11754	26399	26399					-0.0005500067604771175
KYLDEDTIYHL	11	Unmodified	_KYLDEDTIYHL_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.5697326660156	3	470.569759	1408.68745	0.060348	2.8398E-05	0.038845	1.8279E-05	0.099193	4.6677E-05	470.5697256976062	53.722	0.76018	53.779	53.56	54.32	0.056255					78	28	5	0	0	0	0.053629	1	12710	12710		52.193	45.156	1	1721600			20881	6309	11753	11754	26400	26400					-0.0005500067604771175
KYLDEDTIYHL	11	Unmodified	_KYLDEDTIYHL_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	470.569759	1408.68745	0.36877	0.00017353	-0.24688	-0.00011618	0.12189	5.7359E-05	470.569630881281	54.077	0.78777	54.061	53.787	54.575	-0.015923	0.16794	-0.00020136	NaN	64.688	76	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1870100			20882	6309	11753	11754							-0.0005500067604771175
KYLDIPKML	9	Oxidation (M)	_KYLDIPKM(Oxidation (M))L_		KYLDIPKM(1)L		KYLDIPKM(78)L	0	0	1		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;nc|ENSG00000072110|P12814-2|ACTN1	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.8230590820312	2	568.822835	1135.63112	0.50746	0.00028866	0.77468	0.00044065	1.2821	0.00072931	568.8230415956251	47.566	0.66176	47.566	47.187	47.849	0					71	23	4	0	0	0	0.010888	2	10783	10783;10824		78.06	36.221	1	1786600			20883	7;970	11754	11755	26401;26402	26401		1			0.06872699953578376
KYLDIPKML	9	Oxidation (M)	_KYLDIPKM(Oxidation (M))L_		KYLDIPKM(1)L		KYLDIPKM(69)L	0	0	1		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;nc|ENSG00000072110|P12814-2|ACTN1	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8232421875	2	568.822835	1135.63112	0.51011	0.00029016	0.68836	0.00039156	1.1985	0.00068172	568.8230719795337	47.531	0.73046	47.578	47.163	47.893	0.04752					72	26	4	0	0	0	0.016571	2	10760	10760;10801		69.338	20.473	1	2180500			20884	7;970	11754	11755	26403;26404	26403		1			0.06872699953578376
KYLDIPKML	9	Oxidation (M)	_KYLDIPKM(Oxidation (M))L_		KYLDIPKM(1)L		KYLDIPKM(63)L	0	0	1		ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant;nc|ENSG00000072110|P12814-2|ACTN1	ACTN4|p.D874Rfs*17|1|0.4|ENSG00000130402|chr19:38729309-38729310|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.8233032226562	2	568.822835	1135.63112	0.68552	0.00038994	0.47306	0.00026909	1.1586	0.00065903	568.8228787054605	47.497	0.69033	47.54	47.185	47.875	0.04332					67	25	4	0	0	0	0.022205	2	10753	10753;10799		63.227	30.965	1	1922200			20885	7;970	11754	11755	26405;26406	26405		1			0.06872699953578376
KYLDNPNAL	9	Unmodified	_KYLDNPNAL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2764282226562	2	524.277106	1046.53966	0.12786	6.7032E-05	-0.48611	-0.00025486	-0.35826	-0.00018783	524.2764979604436	39.098	1.0117	39.098	38.711	39.723	0					68	29	4	0	0	0	0.0016712	2	8243	8196;8243		114.2	58.699	1	1662400			20886	7947	11755	11756	26407;26408	26408					0.01825152580613576
KYLDNPNAL	9	Unmodified	_KYLDNPNAL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2771606445312	2	524.277106	1046.53966	0.31303	0.00016411	-0.97339	-0.00051033	-0.66036	-0.00034621	524.2765040233642	39.045	1.3929	39.138	38.184	39.577	0.09267					54	19	4	0	0	0	0.0024096	2	8172	8172;8226		106.94	45.339	1	1899400			20887	7947	11755	11756	26409;26410	26409					0.01825152580613576
KYLDNPNAL	9	Unmodified	_KYLDNPNAL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2767333984375	2	524.277106	1046.53966	0.60407	0.0003167	0.32493	0.00017035	0.929	0.00048705	524.2774258075601	39.017	1.1393	39.116	38.923	40.062	0.099403					84	40	4	0	0	0	0.0054984	2	8211	8160;8211		86.332	46.093	1	2016200			20888	7947	11755	11756	26411;26412	26412					0.01825152580613576
KYLDVKFEYL	10	Unmodified	_KYLDVKFEYL_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.9076843261719	3	439.907823	1316.70164	-0.2171	-9.5505E-05	-0.040095	-1.7638E-05	-0.2572	-0.00011314	439.90775905863813	60.243	0.81356	60.243	60.006	60.819	0					70	29	4	0	0	0	0.10463	2	14740	14692;14740		47.053	35.988	1	3034000			20889	1538	11756	11757	26413;26414	26414					0.055956965429231786
KYLDVKFEYL	10	Unmodified	_KYLDVKFEYL_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.9081726074219	3	439.907823	1316.70164	-0.53316	-0.00023454	0.36442	0.00016031	-0.16874	-7.4232E-05	439.9079205036587	60.113	0.8165	60.208	59.961	60.778	0.095093					77	29	4	0	0	0	0.12096	2	14643	14643;14701		43.477	29.862	1	3303800			20890	1538	11756	11757	26415;26416	26415					0.055956965429231786
KYLDVKFEYL	10	Unmodified	_KYLDVKFEYL_					0	0	0		nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.90771484375	3	439.907823	1316.70164	-0.01788	-7.8656E-06	-0.13019	-5.727E-05	-0.14807	-6.5136E-05	439.9077539333779	60.24	0.81426	60.229	59.968	60.782	-0.011486					71	29	4	0	0	0	0.041185	3	14725	14678;14725;14778		60.943	43.895	1	3315700			20891	1538	11756	11757	26417;26418;26419	26418					0.055956965429231786
KYLECRVE	8	Unmodified	_KYLECRVE_					0	0	0		nc|ENSG00000100614|P35813-2|PPM1A;ENSG00000100614|ENST00000395076|PPM1A;nc|ENSG00000100614|P35813-3|PPM1A	nc|ENSG00000100614|P35813-2|PPM1A	nc|ENSG00000100614|P35813-2|PPM1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2669067382812	2	520.265684	1038.51682	0.4351	0.00022637	0.08541	4.4436E-05	0.52051	0.0002708	520.2655852402798	74.092	1.4652	74.061	73.742	75.208	-0.030655					88	52	2	0	0	0	0.1951	1	19127	19127		43.858	7.7313	1	681720			20892	12617	11757	11758	26420	26420					-0.0009018980849759828
KYLEDMKTYF	10	Oxidation (M)	_KYLEDM(Oxidation (M))KTYF_		KYLEDM(1)KTYF		KYLEDM(69)KTYF	0	0	1		ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.884521484375	3	451.88469	1352.63224	0.062822	2.8388E-05	-0.15636	-7.0657E-05	-0.09354	-4.2269E-05	451.88480210062676	41.496	0.49953	41.496	41.152	41.651	0					52	18	4	0	0	0	0.022902	2	8913	8913;8964		68.563	47.692	1	1958500			20893	8549	11758	11759	26421;26422	26421		913			-0.02997130468179421
KYLEDMKTYF	10	Oxidation (M)	_KYLEDM(Oxidation (M))KTYF_		KYLEDM(1)KTYF		KYLEDM(58)KTYF	0	0	1		ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.8846740722656	3	451.88469	1352.63224	0.13943	6.3005E-05	-0.15678	-7.0847E-05	-0.017354	-7.842E-06	451.88462123405753	41.087	0.63488	41.177	40.876	41.511	0.090252					75	23	4	0	0	0	0.052809	2	8818	8818;8871		58.398	32.401	1	1708000			20894	8549	11758	11759	26423;26424	26423		913			-0.02997130468179421
KYLEDMKTYF	10	Oxidation (M)	_KYLEDM(Oxidation (M))KTYF_		KYLEDM(1)KTYF		KYLEDM(52)KTYF	0	0	1		ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	ENSG00000242550|ENST00000238508|SERPINB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.8846740722656	3	451.88469	1352.63224	-0.0057834	-2.6134E-06	-0.092657	-4.187E-05	-0.09844	-4.4484E-05	452.2190192171681	41.001	0.64471	41.098	40.832	41.477	0.096622					78	23	4	0	0	0	0.08115	1	8832	8832		52.193	34.33	1	1920800			20895	8549	11758	11759	26425	26425		913			-0.02997130468179421
KYLEENVMRHF	11	Oxidation (M)	_KYLEENVM(Oxidation (M))RHF_		KYLEENVM(1)RHF		KYLEENVM(78)RHF	0	0	1		nc|ENSG00000126016|Q4VCS5-2|AMOT;ENSG00000126016|ENST00000371959|AMOT	nc|ENSG00000126016|Q4VCS5-2|AMOT	nc|ENSG00000126016|Q4VCS5-2|AMOT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.9127502441406	3	494.578371	1480.71328	0.29904	0.0001479	-0.2747	-0.00013586	0.024346	1.2041E-05	494.9126812481824	33.112	0.8644	33.112	32.782	33.646	0					92	30	4	0	0	0	0.0061271	1	6404	6404		77.867	65.011	1	1049900			20896	3254	11759	11760	26426	26426		416			-0.00784429705436196
KYLEENVMRHF	11	Oxidation (M)	_KYLEENVM(Oxidation (M))RHF_		KYLEENVM(1)RHF		KYLEENVM(72)RHF	0	0	1		nc|ENSG00000126016|Q4VCS5-2|AMOT;ENSG00000126016|ENST00000371959|AMOT	nc|ENSG00000126016|Q4VCS5-2|AMOT	nc|ENSG00000126016|Q4VCS5-2|AMOT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.57861328125	3	494.578371	1480.71328	0.30123	0.00014898	-0.3799	-0.00018789	-0.078671	-3.8909E-05	494.57844231062177	33.006	0.71769	33.061	32.765	33.483	0.054371					79	25	5	0	0	0	0.0087711	1	6358	6358		72.272	60.641	1	1278100			20897	3254	11759	11760	26427	26427		416			-0.00784429705436196
KYLEERAMRQF	11	Oxidation (M)	_KYLEERAM(Oxidation (M))RQF_		KYLEERAM(1)RQF		KYLEERAM(90)RQF	0	0	1		ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.25469970703125	3	496.253887	1485.73983	0.13798	6.8471E-05	-0.24537	-0.00012176	-0.10739	-5.3292E-05	496.2545635420398	28.295	2.1594	28.295	27.84	29.999	0					281	76	7	0	0	0	0.0014855	5	4968	4868;4917;4968;5020;5067		90.104	73.04	1	29476000			20898	2542	11760	11761	26428;26429;26430;26431;26432	26430		318			0.01639259185890296
KYLEERAMRQF	11	Oxidation (M)	_KYLEERAM(Oxidation (M))RQF_		KYLEERAM(1)RQF		KYLEERAM(110)RQF	0	0	1		ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2550354003906	3	496.253887	1485.73983	0.20577	0.00010211	-0.039738	-1.972E-05	0.16603	8.2394E-05	496.2545688134745	28.319	2.1314	28.315	27.912	30.043	-0.0042572					196	74	3	0	0	0	0.00014719	4	4971	4872;4922;4971;5020		108.77	84.805	1	28972000			20899	2542	11760	11761	26433;26434;26435;26436	26435		318			0.01639259185890296
KYLEERAMRQF	11	Oxidation (M)	_KYLEERAM(Oxidation (M))RQF_		KYLEERAM(1)RQF		KYLEERAM(120)RQF	0	0	1		ENST00000506326.1_1_3:134076549-134085275:-|nuORF;nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	ENST00000506326.1_1_3:134076549-134085275:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.25469970703125	3	496.253887	1485.73983	0.05175	2.5681E-05	-0.14864	-7.3764E-05	-0.096893	-4.8083E-05	496.25468459704484	28.336	2.6841	28.336	27.539	30.223	0.0004673					344	94	7	0	0	0	1.3992E-05	5	4895	4853;4895;4946;4988;5030		120.54	96.579	1	27193000			20900	2542	11760	11761	26437;26438;26439;26440;26441	26438		318			0.01639259185890296
KYLEERLIELL	11	Unmodified	_KYLEERLIELL_					0	0	0		ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1	ENSG00000163820|ENST00000296137|FYCO1	ENSG00000163820|ENST00000296137|FYCO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.30267333984375	3	473.613299	1417.81807	0.19227	9.1063E-05	0.94144	0.00044588	1.1337	0.00053694	473.61365446931904	49.679	0.51694	49.679	49.351	49.868	0					32	18	2	0	0	0	0.33207	1	11420	11420		5.5233	2.1676	1	320620			20901	5740	11761	11762	26442	26442					0.1258701504284545
KYLEESTIRHF	11	Unmodified	_KYLEESTIRHF_					0	0	0		ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.9175720214844	3	474.917381	1421.73031	0.24761	0.00011759	-0.56306	-0.00026741	-0.31545	-0.00014981	474.9174122247782	36.009	1.007	36.009	35.693	36.7	0					101	36	5	0	0	0	9.3441E-14	4	7285	7240;7285;7336;7387		178.85	156.08	1	2385600			20902	6023	11762	11763	26443;26444;26445;26446	26444					0.036318141720357744
KYLEESTIRHF	11	Unmodified	_KYLEESTIRHF_					0	0	0		ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.9174499511719	3	474.917381	1421.73031	0.36713	0.00017435	-0.71993	-0.00034191	-0.3528	-0.00016755	474.9173669524291	35.886	1.0502	35.969	35.651	36.701	0.082355					108	37	5	0	0	0	4.7736E-06	3	7198	7198;7244;7294		129.22	109.59	1	2312800			20903	6023	11762	11763	26447;26448;26449	26447					0.036318141720357744
KYLEESTIRHF	11	Unmodified	_KYLEESTIRHF_					0	0	0		ENSG00000166025|ENST00000433060|AMOTL1;nc|ENSG00000166025|Q8IY63-2|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	ENSG00000166025|ENST00000433060|AMOTL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.9175109863281	3	474.917381	1421.73031	0.39451	0.00018736	-0.77647	-0.00036876	-0.38195	-0.0001814	474.91731246360956	35.864	1.0866	35.95	35.671	36.757	0.086246					112	38	5	0	0	0	1.5413E-09	3	7236	7191;7236;7287		154.88	127.75	1	2321500			20904	6023	11762	11763	26450;26451;26452	26451					0.036318141720357744
KYLEETNSL	9	Unmodified	_KYLEETNSL_					0	0	0		nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7796630859375	2	548.779679	1095.5448	0.55656	0.00030543	-0.79292	-0.00043514	-0.23635	-0.0001297	548.779205215032	37.319	0.76117	37.406	37.169	37.93	0.087406					62	27	3	0	0	0	5.3912E-07	1	7681	7681		159.1	44.899	1	1075800			20905	8169	11763	11764	26453	26453					0.0008541165257156536
KYLEETNSL	9	Unmodified	_KYLEETNSL_					0	0	0		nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7794799804688	2	548.779679	1095.5448	0.55703	0.00030569	-0.90703	-0.00049776	-0.35	-0.00019207	548.7792300529594	37.3	0.69809	37.393	37.142	37.84	0.093014					62	25	3	0	0	0	0.00024732	1	7677	7677		132.38	62.048	1	1060400			20906	8169	11763	11764	26454	26454					0.0008541165257156536
KYLEETNSL	9	Unmodified	_KYLEETNSL_					0	0	0		nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	548.779679	1095.5448	0.82156	0.00045086	-1.1088	-0.0006085	-0.28726	-0.00015764	548.7790519562486	37.427	0.61305	37.427	37.233	37.846	0	0.018326	-0.00021239	NaN	159.1	55	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1131100			20907	8169	11763	11764							0.0008541165257156536
KYLEHPLLL	9	Unmodified	_KYLEHPLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3369140625	2	563.336967	1124.65938	0.3964	0.00022331	-0.52909	-0.00029805	-0.13269	-7.4747E-05	563.3365909104851	49.137	1.1937	49.137	48.856	50.05	0					127	43	4	0	0	0	6.1526E-05	4	11328	11279;11289;11328;11369		147.06	88.38	1	4200600			20908	2601	11764	11765	26455;26456;26457;26458	26457					0.10203765925189145
KYLEHPLLL	9	Unmodified	_KYLEHPLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3367919921875	2	563.336967	1124.65938	0.34208	0.0001927	-0.31977	-0.00018014	0.022304	1.2565E-05	563.3366906605767	49.182	1.1276	49.227	48.906	50.033	0.044891					132	41	5	0	0	0	0.00014042	2	11311	11311;11360		134.3	84.363	1	4477400			20909	2601	11764	11765	26459;26460	26459					0.10203765925189145
KYLEHPLLL	9	Unmodified	_KYLEHPLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.3369750976562	2	563.336967	1124.65938	0.11754	6.6215E-05	-0.12622	-7.1104E-05	-0.0086781	-4.8887E-06	563.3367877839959	49.13	1.4107	49.163	48.852	50.263	0.032043					130	51	5	0	0	0	6.1526E-05	3	11317	11266;11317;11360		147.06	88.38	1	4373200			20910	2601	11764	11765	26461;26462;26463	26462					0.10203765925189145
KYLEMIYSM	9	2 Oxidation (M)	_KYLEM(Oxidation (M))IYSM(Oxidation (M))_		KYLEM(1)IYSM(1)		KYLEM(210)IYSM(210)	0	0	2		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.2804565429688	2	605.280143	1208.54573	0.44337	0.00026836	-0.23978	-0.00014514	0.20359	0.00012323	605.2802998778064	43.984	2.1744	43.984	43.63	45.805	0					220	79	6	0	0	0	1.6153E-16	6	9785	9646;9690;9739;9785;9834;9887		208.15	155.88	1	19956000			20911	8284	11765	11766	26464;26465;26466;26467;26468;26469	26467		897;898			-0.05019833294386444
KYLEMIYSM	9	2 Oxidation (M)	_KYLEM(Oxidation (M))IYSM(Oxidation (M))_		KYLEM(1)IYSM(1)		KYLEM(190)IYSM(190)	0	0	2		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.2805786132812	2	605.280143	1208.54573	0.53829	0.00032581	-0.43562	-0.00026367	0.10267	6.2142E-05	605.2802062867012	43.788	1.5607	43.866	43.483	45.043	0.077515					211	57	7	0	0	0	3.0646E-11	5	9618	9571;9618;9668;9717;9765		193.29	141.03	1	20107000			20912	8284	11765	11766	26470;26471;26472;26473;26474	26471		897;898			-0.05019833294386444
KYLEMIYSM	9	2 Oxidation (M)	_KYLEM(Oxidation (M))IYSM(Oxidation (M))_		KYLEM(1)IYSM(1)		KYLEM(190)IYSM(190)	0	0	2		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.2807006835938	2	605.280143	1208.54573	0.38133	0.00023081	-0.16025	-9.6997E-05	0.22108	0.00013382	605.2803047228397	43.736	2.0715	43.82	43.434	45.506	0.083992					233	76	8	0	0	0	3.0646E-11	5	9649	9555;9601;9649;9700;9749		193.29	141.03	1	23266000			20913	8284	11765	11766	26475;26476;26477;26478;26479	26477		897;898			-0.05019833294386444
KYLEQQFNL	9	Unmodified	_KYLEQQFNL_					0	0	0		nc|ENSG00000176463|Q9UIG8-3|SLCO3A1;ENST00000553653.5_1_15:92397138-92694297:+|nuORF;nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;ENSG00000176463|ENST00000318445|SLCO3A1;nc|ENSG00000176463|Q9UIG8-4|SLCO3A1;ENST00000555549.5_1_15:92641439-92706362:+|nuORF	nc|ENSG00000176463|Q9UIG8-3|SLCO3A1	nc|ENSG00000176463|Q9UIG8-3|SLCO3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8112182617188	2	591.811313	1181.60807	0.51021	0.00030195	-0.036724	-2.1734E-05	0.47348	0.00028021	591.8106287509539	53.225	0.5082	53.225	52.96	53.468	0					30	18	2	0	0	0	0.0010968	1	12556	12556		121.53	65.357	1	756560			20914	6930	11766	11767	26480	26480					0.024533971604796534
KYLEQQFNL	9	Unmodified	_KYLEQQFNL_					0	0	0		nc|ENSG00000176463|Q9UIG8-3|SLCO3A1;ENST00000553653.5_1_15:92397138-92694297:+|nuORF;nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;ENSG00000176463|ENST00000318445|SLCO3A1;nc|ENSG00000176463|Q9UIG8-4|SLCO3A1;ENST00000555549.5_1_15:92641439-92706362:+|nuORF	nc|ENSG00000176463|Q9UIG8-3|SLCO3A1	nc|ENSG00000176463|Q9UIG8-3|SLCO3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8115234375	2	591.811313	1181.60807	0.59477	0.00035199	0.23824	0.00014099	0.83301	0.00049298	591.8107225766166	53.23	0.49173	53.286	53.043	53.535	0.056255					34	17	4	0	0	0	0.0032746	1	12547	12547		100.09	61.915	1	719090			20915	6930	11766	11767	26481	26481					0.024533971604796534
KYLEQQFNL	9	Unmodified	_KYLEQQFNL_					0	0	0		nc|ENSG00000176463|Q9UIG8-3|SLCO3A1;ENST00000553653.5_1_15:92397138-92694297:+|nuORF;nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;ENSG00000176463|ENST00000318445|SLCO3A1;nc|ENSG00000176463|Q9UIG8-4|SLCO3A1;ENST00000555549.5_1_15:92641439-92706362:+|nuORF	nc|ENSG00000176463|Q9UIG8-3|SLCO3A1	nc|ENSG00000176463|Q9UIG8-3|SLCO3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.8112182617188	2	591.811313	1181.60807	0.47415	0.00028061	-0.22925	-0.00013567	0.2449	0.00014494	591.810742762029	53.435	0.49671	53.425	53.192	53.688	-0.0096054					31	18	2	0	0	0	0.0010968	1	12612	12612		121.53	83.359	1	738790			20916	6930	11766	11767	26482	26482					0.024533971604796534
KYLESFLAF	9	Unmodified	_KYLESFLAF_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.30078125	2	559.30005	1116.58555	0.23074	0.00012905	1.0496	0.00058705	1.2803	0.0007161	559.3003747866949	73.654	0.90304	73.623	73.208	74.111	-0.030655					69	32	3	0	0	0	0.058995	1	18754	18754		49.554	20.473	1	590620			20917	3167	11767	11768	26483	26483					0.03191797762860915
KYLESFLAF	9	Unmodified	_KYLESFLAF_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	559.30005	1116.58555	0.11689	6.5374E-05	1.1036	0.00061724	1.2205	0.00068262	559.3004006864817	73.534	0.87494	73.534	73.191	74.066	0	-0.016834	-3.1741E-06	NaN	49.554	73	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	579190			20918	3167	11767	11768							0.03191797762860915
KYLESFLAF	9	Unmodified	_KYLESFLAF_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	559.30005	1116.58555	0.22845	0.00012777	1.1776	0.00065862	1.406	0.0007864	559.3004057219584	73.441	0.94679	73.495	73.172	74.119	0.053833	-0.055374	7.9579E-05	NaN	49.554	71	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	649800			20919	3167	11767	11768							0.03191797762860915
KYLFPLNEI	9	Unmodified	_KYLFPLNEI_					0	0	0		ENST00000506793.5_1_4:44680541-44700695:+|nuORF;ENSG00000151806|ENST00000281543|GUF1	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.3035278320312	2	568.82115	1135.62775	0.17281	9.8296E-05	1.624	0.00092377	1.7968	0.0010221	568.8225093870444	59.195	1.6465	59.195	58.767	60.413	0					177	58	6	0	0	0	0.14076	1	14500	14500		32.305	4.6767	1	21684000			20920	4986	11768	11769	26484	26484					0.06535773171231085
KYLFPLNEI	9	Unmodified	_KYLFPLNEI_					0	0	0		ENST00000506793.5_1_4:44680541-44700695:+|nuORF;ENSG00000151806|ENST00000281543|GUF1	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.303466796875	2	568.82115	1135.62775	0.36674	0.00020861	1.4056	0.00079956	1.7724	0.0010082	568.822371174742	59.052	1.3347	59.143	58.708	60.043	0.091301					166	47	5	0	0	0	0.14076	1	14443	14443		32.305	8.2849	1	20273000			20921	4986	11768	11769	26485	26485					0.06535773171231085
KYLFPLNEI	9	Unmodified	_KYLFPLNEI_					0	0	0		ENST00000506793.5_1_4:44680541-44700695:+|nuORF;ENSG00000151806|ENST00000281543|GUF1	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.3036499023438	2	568.82115	1135.62775	0.36306	0.00020651	1.462	0.00083164	1.8251	0.0010381	568.8224253083671	59.133	1.5825	59.118	58.712	60.295	-0.014267					169	55	5	0	0	0	0.14076	1	14534	14534		32.305	9.8529	1	19364000			20922	4986	11768	11769	26486	26486					0.06535773171231085
KYLGLLENL	9	Unmodified	_KYLGLLENL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.P889Lfs*40|1|0.02|ENSG00000197879|chr17:1468441-1468442|-/TTGCA|frameshift_variant	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8136596679688	2	531.813325	1061.6121	0.53849	0.00028638	-2.2893	-0.0012175	-1.7508	-0.00093111	531.8133909776504	66.078	0.98877	66.161	65.916	66.905	0.083832					67	35	2	0	0	0	0.0028032	3	16509	16509;16537;16592		103.82	38.589	1	1540800			20923	8008	11769	11770	26487;26488;26489	26487					0.08375486654176711
KYLGLLENL	9	Unmodified	_KYLGLLENL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.P889Lfs*40|1|0.02|ENSG00000197879|chr17:1468441-1468442|-/TTGCA|frameshift_variant	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.813720703125	2	531.813325	1061.6121	0.49696	0.00026429	-1.7917	-0.00095284	-1.2947	-0.00068855	531.8134308675492	66.248	1.004	66.234	65.919	66.923	-0.013588					65	36	2	0	0	0	0.0028032	1	16555	16555		103.82	39.863	1	1450900			20924	8008	11769	11770	26490	26490					0.08375486654176711
KYLGQLHYL	9	Unmodified	_KYLGQLHYL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.8192749023438	2	567.818941	1133.62333	0.53016	0.00030104	0.49246	0.00027963	1.0226	0.00058067	567.8193178648212	44.408	1.1533	44.476	43.881	45.034	0.068569					102	42	4	0	0	0	5.2996E-06	3	9853	9804;9853;9911		156.16	81.434	1	3028100			20925	1059	11770	11771	26491;26492;26493	26492					0.06186308748306146
KYLGQLHYL	9	Unmodified	_KYLGQLHYL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.819091796875	2	567.818941	1133.62333	0.30822	0.00017501	0.67065	0.00038081	0.97887	0.00055582	567.8193749329887	44.348	1.1642	44.423	43.908	45.072	0.07505					115	42	4	0	0	0	0.00056175	2	9826	9781;9826		128.37	57.232	1	2898200			20926	1059	11770	11771	26494;26495	26495					0.06186308748306146
KYLINLETL	9	Unmodified	_KYLINLETL_					0	0	0		ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8265380859375	2	553.826432	1105.63831	0.53705	0.00029743	-0.24576	-0.00013611	0.29129	0.00016132	553.8261660327125	65.671	0.86529	65.671	65.373	66.239	0					82	30	4	0	0	0	7.3453E-05	2	16392	16392;16442		145.13	59.858	1	2015000			20927	1470	11771	11772	26496;26497	26496					0.08971755825655237
KYLINLETL	9	Unmodified	_KYLINLETL_					0	0	0		ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8264770507812	2	553.826432	1105.63831	0.27	0.00014954	0.012209	6.7617E-06	0.28221	0.0001563	553.8263015739398	65.521	0.84486	65.61	65.352	66.197	0.088882					79	30	4	0	0	0	5.7257E-07	2	16368	16368;16428		157.8	72.523	1	2181100			20928	1470	11771	11772	26498;26499	26498					0.08971755825655237
KYLINLETL	9	Unmodified	_KYLINLETL_					0	0	0		ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8265380859375	2	553.826432	1105.63831	0.44186	0.00024472	-0.088929	-4.9251E-05	0.35294	0.00019547	553.8262483091376	65.674	0.82121	65.663	65.348	66.169	-0.011337					80	29	4	0	0	0	5.7257E-07	1	16402	16402		157.8	72.523	1	1896600			20929	1470	11771	11772	26500	26500					0.08971755825655237
KYLKVFYKF	9	Unmodified	_KYLKVFYKF_					0	0	0		nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213967|ENST00000594466|ZNF726;ENSG00000213096|ENST00000357002|ZNF254;ZNF91|p.K665Dfs*2|1|0.07|ENSG00000167232|chr19:23360986-23360987|-/TAATC|frameshift_variant;nc|ENSG00000167232|Q05481-2|ZNF91;ENSG00000167232|ENST00000300619|ZNF91	nc|ENSG00000213096|O75437-2|ZNF254	nc|ENSG00000213096|O75437-2|ZNF254	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.20947265625	3	412.577749	1234.71142	0.2628	0.00010843	-0.10155	-4.1898E-05	0.16125	6.6529E-05	412.5776339127588	45.59	0.5726	45.59	45.315	45.888	0					44	20	3	0	0	0	0.089483	1	10192	10192		59.368	34.487	1	444760			20930	6160	11772	11773	26501	26501					0.10344929338907605
KYLKVFYKF	9	Unmodified	_KYLKVFYKF_					0	0	0		nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213967|ENST00000594466|ZNF726;ENSG00000213096|ENST00000357002|ZNF254;ZNF91|p.K665Dfs*2|1|0.07|ENSG00000167232|chr19:23360986-23360987|-/TAATC|frameshift_variant;nc|ENSG00000167232|Q05481-2|ZNF91;ENSG00000167232|ENST00000300619|ZNF91	nc|ENSG00000213096|O75437-2|ZNF254	nc|ENSG00000213096|O75437-2|ZNF254	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.20965576171875	3	412.577749	1234.71142	0.45433	0.00018745	-0.44183	-0.00018229	0.012505	5.1594E-06	412.5775439184478	45.25	0.64946	45.318	45.062	45.712	0.068569					58	22	4	0	0	0	0.2422	1	10121	10121		19.362	16.519	1	493560			20931	6160	11772	11773	26502	26502					0.10344929338907605
KYLKVFYKF	9	Unmodified	_KYLKVFYKF_					0	0	0		nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213967|ENST00000594466|ZNF726;ENSG00000213096|ENST00000357002|ZNF254;ZNF91|p.K665Dfs*2|1|0.07|ENSG00000167232|chr19:23360986-23360987|-/TAATC|frameshift_variant;nc|ENSG00000167232|Q05481-2|ZNF91;ENSG00000167232|ENST00000300619|ZNF91	nc|ENSG00000213096|O75437-2|ZNF254	nc|ENSG00000213096|O75437-2|ZNF254	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.5777282714844	3	412.577749	1234.71142	0.28987	0.0001196	-0.15533	-6.4087E-05	0.13454	5.5509E-05	412.57759787938335	45.224	0.69059	45.299	45.101	45.792	0.075035					57	25	3	0	0	0	0.017549	1	10086	10086		67.838	52.1	1	490550			20932	6160	11772	11773	26503	26503					0.10344929338907605
KYLLDNRADP	10	Unmodified	_KYLLDNRADP_					0	0	0		ANKRD34C|p.S484Lfs*5|1|0.35|ENSG00000235711|chr15:79294734-79294743|TCTTGCTCTC/-|frameshift_variant;ENSG00000235711|ENST00000421388|ANKRD34C	ANKRD34C|p.S484Lfs*5|1|0.35|ENSG00000235711|chr15:79294734-79294743|TCTTGCTCTC/-|frameshift_variant	ANKRD34C|p.S484Lfs*5|1|0.35|ENSG00000235711|chr15:79294734-79294743|TCTTGCTCTC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.8742065429688	2	602.81967	1203.62479	0.52122	0.0003142	0.84092	0.00050692	1.3621	0.00082112	602.8203754286167	57.572	0.55082	57.572	57.376	57.927	0					37	19	2	0	0	0	0.31323	1	13876	13876		15.248	2.206	1	554750			20933	44	11773	11774	26504	26504					0.031118980464270862
KYLLDNRADP	10	Unmodified	_KYLLDNRADP_					0	0	0		ANKRD34C|p.S484Lfs*5|1|0.35|ENSG00000235711|chr15:79294734-79294743|TCTTGCTCTC/-|frameshift_variant;ENSG00000235711|ENST00000421388|ANKRD34C	ANKRD34C|p.S484Lfs*5|1|0.35|ENSG00000235711|chr15:79294734-79294743|TCTTGCTCTC/-|frameshift_variant	ANKRD34C|p.S484Lfs*5|1|0.35|ENSG00000235711|chr15:79294734-79294743|TCTTGCTCTC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8740844726562	2	602.81967	1203.62479	0.53314	0.00032139	1.2857	0.00077504	1.8188	0.0010964	602.8204574719542	57.368	0.47042	57.453	57.268	57.738	0.085621					25	16	2	0	0	0	0.28569	1	13839	13839		26.268	2.4784	1	886740			20934	44	11773	11774	26505	26505					0.031118980464270862
KYLLDNRADP	10	Unmodified	_KYLLDNRADP_					0	0	0		ANKRD34C|p.S484Lfs*5|1|0.35|ENSG00000235711|chr15:79294734-79294743|TCTTGCTCTC/-|frameshift_variant;ENSG00000235711|ENST00000421388|ANKRD34C	ANKRD34C|p.S484Lfs*5|1|0.35|ENSG00000235711|chr15:79294734-79294743|TCTTGCTCTC/-|frameshift_variant	ANKRD34C|p.S484Lfs*5|1|0.35|ENSG00000235711|chr15:79294734-79294743|TCTTGCTCTC/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	602.81967	1203.62479	0.53968	0.00032533	0.68193	0.00041108	1.2216	0.00073641	602.8201925346809	57.791	0.1049	57.877	57.84	57.945	0.085621	0.17692	-0.00055497	NaN	15.248	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84280			20935	44	11773	11774							0.031118980464270862
KYLLDNRADP	10	Unmodified	_KYLLDNRADP_					0	0	0		ANKRD34C|p.S484Lfs*5|1|0.35|ENSG00000235711|chr15:79294734-79294743|TCTTGCTCTC/-|frameshift_variant;ENSG00000235711|ENST00000421388|ANKRD34C	ANKRD34C|p.S484Lfs*5|1|0.35|ENSG00000235711|chr15:79294734-79294743|TCTTGCTCTC/-|frameshift_variant	ANKRD34C|p.S484Lfs*5|1|0.35|ENSG00000235711|chr15:79294734-79294743|TCTTGCTCTC/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	602.81967	1203.62479	0.2394	0.00014431	1.5278	0.000921	1.7672	0.0010653	602.8204807963107	57.668	0.53375	57.651	57.443	57.977	-0.017197	-0.049103	0.00046487	NaN	15.248	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565480			20936	44	11773	11774							0.031118980464270862
KYLLDSPSL	9	Unmodified	_KYLLDSPSL_					0	0	0		nc|ENSG00000181830|Q96A29-2|SLC35C1;ENSG00000181830|ENST00000314134|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3080444335938	2	518.289682	1034.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.837	1	53.837	53.337	54.337	0								0	0	0	0.018587	1	12743	12743		70.332	18.702	1				20937	7254	11774	11775	26506	26506					0.04891207383184337
KYLLDSPSL	9	Unmodified	_KYLLDSPSL_					0	0	0		nc|ENSG00000181830|Q96A29-2|SLC35C1;ENSG00000181830|ENST00000314134|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3079833984375	2	518.289682	1034.56481	0.19861	0.00010294	0.99474	0.00051557	1.1934	0.0006185	518.2901119893232	53.656	0.80788	53.712	53.431	54.239	0.056255					40	30	2	0	0	0	0.026579	1	12722	12722		61.602	9.3336	1	1040200			20938	7254	11774	11775	26507	26507					0.04891207383184337
KYLLDSPSL	9	Unmodified	_KYLLDSPSL_					0	0	0		nc|ENSG00000181830|Q96A29-2|SLC35C1;ENSG00000181830|ENST00000314134|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3079833984375	2	518.289682	1034.56481	0.41553	0.00021536	0.82183	0.00042594	1.2374	0.00064131	518.2900788807895	53.849	0.72625	53.84	53.531	54.258	-0.0096054					55	26	3	0	0	0	0.015924	1	12776	12776		70.332	18.064	1	995010			20939	7254	11774	11775	26508	26508					0.04891207383184337
KYLLHSLVF	9	Unmodified	_KYLLHSLVF_					0	0	0		ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3;ENSG00000087008|ENST00000356406|ACOX3	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.3317260742188	2	560.331685	1118.64882	0.85821	0.00048088	-0.81992	-0.00045943	0.038294	2.1457E-05	560.3310636902637	56.265	1.2851	56.246	55.942	57.227	-0.019081					85	46	3	0	0	0	0.0028626	2	13457	13457;13502		103.35	57.333	1	4590100			20940	1291	11775	11776	26509;26510	26509					0.09423783270767672
KYLLHSLVF	9	Unmodified	_KYLLHSLVF_					0	0	0		ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3;ENSG00000087008|ENST00000356406|ACOX3	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.331685	1118.64882	0.94629	0.00053023	-1.1022	-0.00061757	-0.15587	-8.7341E-05	560.3308721739753	56.075	1.429	56.075	55.787	57.216	0	-0.051312	-0.00011691	NaN	103.35	96	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4169900			20941	1291	11775	11776							0.09423783270767672
KYLLHSLVF	9	Unmodified	_KYLLHSLVF_					0	0	0		ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3;ENSG00000087008|ENST00000356406|ACOX3	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.331685	1118.64882	0.83076	0.0004655	-1.0932	-0.00061255	-0.26243	-0.00014705	560.3309145268533	55.987	1.4754	56.058	55.828	57.303	0.070885	-0.068061	-0.00010686	NaN	103.35	108	54	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4425100			20942	1291	11775	11776							0.09423783270767672
KYLLKVAEL	9	Unmodified	_KYLLKVAEL_					0	0	0		ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENSG00000089006|ENST00000377759|SNX5	ENSG00000089006|ENST00000377759|SNX5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.83935546875	2	538.839342	1075.66413	0.73415	0.00039559	-0.26255	-0.00014147	0.4716	0.00025412	538.8390595452703	47.613	0.41257	47.613	47.411	47.823	0					34	14	3	0	0	0	0.0066897	1	10819	10819		100.09	42.369	1	710360			20943	1339	11776	11777	26511	26511					0.12932650067932627
KYLLKVAEL	9	Unmodified	_KYLLKVAEL_					0	0	0		ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENSG00000089006|ENST00000377759|SNX5	ENSG00000089006|ENST00000377759|SNX5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8392944335938	2	538.839342	1075.66413	0.63598	0.00034269	-0.28285	-0.00015241	0.35313	0.00019028	538.8390530738	47.552	0.46138	47.599	47.374	47.836	0.04752					38	16	3	0	0	0	0.0056456	1	10814	10814		103.42	27.659	1	820960			20944	1339	11776	11777	26512	26512					0.12932650067932627
KYLLKVAEL	9	Unmodified	_KYLLKVAEL_					0	0	0		ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101462478-101462640:+|nuORF	ENSG00000089006|ENST00000377759|SNX5	ENSG00000089006|ENST00000377759|SNX5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8390502929688	2	538.839342	1075.66413	0.88166	0.00047508	-0.52143	-0.00028096	0.36024	0.00019411	538.8389173858991	47.582	0.3963	47.625	47.401	47.797	0.04332					32	14	3	0	0	0	0.052436	1	10820	10820		74.2	22.57	1	634610			20945	1339	11776	11777	26513	26513					0.12932650067932627
KYLLTPVNF	9	Unmodified	_KYLLTPVNF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.8161010742188	2	547.815867	1093.61718	0.5254	0.00028782	0.068086	3.7298E-05	0.59348	0.00032512	547.8154925435396	63.572	0.96067	63.572	63.225	64.185	0					73	34	3	0	0	0	0.0037449	3	15753	15705;15753;15823		96.367	52.508	1	1279800			20946	2837	11777	11778	26514;26515;26516	26515					0.07411790516789551
KYLLTPVNF	9	Unmodified	_KYLLTPVNF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.8159790039062	2	547.815867	1093.61718	0.64613	0.00035396	-0.40685	-0.00022288	0.23928	0.00013108	547.8152980655276	63.436	0.81461	63.532	63.228	64.043	0.095722					64	28	3	0	0	0	0.0045319	3	15711	15669;15711;15786		90.135	50.178	1	1606900			20947	2837	11777	11778	26517;26518;26519	26518					0.07411790516789551
KYLLTPVNF	9	Unmodified	_KYLLTPVNF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8158569335938	2	547.815867	1093.61718	0.66882	0.00036639	-0.28094	-0.00015391	0.38787	0.00021248	547.8153011441199	63.562	0.85614	63.554	63.297	64.153	-0.0085526					63	30	3	0	0	0	0.0042138	1	15756	15756		92.653	56.526	1	1514800			20948	2837	11777	11778	26520	26520					0.07411790516789551
KYLLVSERWT	10	Unmodified	_KYLLVSERWT_					0	0	0		ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.8614501953125	2	647.861338	1293.70812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.66	1	103.66	103.16	104.16	0								0	0	0	0.37664	1	27535	27535		3.5965	0	1				20949	11779	11778	11779	26521	26521					0.07301634494274367
KYLLVSERWT	10	Unmodified	_KYLLVSERWT_					0	0	0		ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.8601684570312	2	647.861338	1293.70812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.9	1	103.9	103.4	104.4	0								0	0	0	0.37664	1	27590	27590		3.5965	0	1				20950	11779	11778	11779	26522	26522					0.07301634494274367
KYLLVSERWT	10	Unmodified	_KYLLVSERWT_					0	0	0		ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.8676147460938	2	647.861338	1293.70812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.38	1	103.39	102.89	103.89	0.0082703								0	0	0	0.37664	1	27478	27478		3.5965	0	1				20951	11779	11778	11779	26523	26523					0.07301634494274367
KYLLVSERWT	10	Unmodified	_KYLLVSERWT_					0	0	0		ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.8613891601562	2	647.861338	1293.70812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.52	1	103.53	103.03	104.03	0.0082703								0	0	0	0.37664	1	27510	27510		3.5965	0	1				20952	11779	11778	11779	26524	26524					0.07301634494274367
KYLLVSERWT	10	Unmodified	_KYLLVSERWT_					0	0	0		ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.8624877929688	2	647.861338	1293.70812	0.2808	0.00018192	-2.0432	-0.0013237	-1.7624	-0.0011418	647.8616339481116	102.98	0.038986	102.97	102.94	102.98	-0.0011063					5	3	2	0	0	0	0.39935	1	27406	27406		3.5965	0.60125	1	274500			20953	11779	11778	11779	26525	26525					0.07301634494274367
KYLLVSERWT	10	Unmodified	_KYLLVSERWT_					0	0	0		ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.8602294921875	2	647.861338	1293.70812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.27	1	103.27	102.77	103.77	-0.0011139								0	0	0	0.37664	1	27482	27482		3.5965	0	1				20954	11779	11778	11779	26526	26526					0.07301634494274367
KYLLVSERWT	10	Unmodified	_KYLLVSERWT_					0	0	0		ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.8624877929688	2	647.861338	1293.70812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.94	1	103.94	103.44	104.44	-0.0011139								0	0	0	0.37664	1	27631	27631		3.5965	0	1				20955	11779	11778	11779	26527	26527					0.07301634494274367
KYLLVSERWT	10	Unmodified	_KYLLVSERWT_					0	0	0		ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	ENST00000548821.1_1_12:120615393-120615546:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.8622436523438	2	647.861338	1293.70812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.13	1	104.13	103.63	104.63	0.0011444								0	0	0	0.37044	1	27678	27678		6.2058	0	1				20956	11779	11778	11779	26528	26528					0.07301634494274367
KYLNDLEDSY	10	Unmodified	_KYLNDLEDSY_					0	0	0		ENST00000418334.5_1_1:160144048-160152563:+|nuORF;ENSG00000132681|ENST00000368081|ATP1A4;ENST00000466526.1_1_1:160147295-160152563:+|nuORF;nc|ENSG00000132681|Q13733-2|ATP1A4	ENST00000418334.5_1_1:160144048-160152563:+|nuORF	ENST00000418334.5_1_1:160144048-160152563:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.2938232421875	2	630.29315	1258.57175	0.44748	0.00028205	0.59122	0.00037264	1.0387	0.00065469	630.2934897564946	53.157	0.95858	53.157	52.875	53.834	0					83	35	4	0	0	0	0.19885	2	12544	12494;12544		32.786	0	1	2010700			20957	3658	11779	11780	26529;26530	26530					-0.04719524526899477
KYLNDLEDSY	10	Unmodified	_KYLNDLEDSY_					0	0	0		ENST00000418334.5_1_1:160144048-160152563:+|nuORF;ENSG00000132681|ENST00000368081|ATP1A4;ENST00000466526.1_1_1:160147295-160152563:+|nuORF;nc|ENSG00000132681|Q13733-2|ATP1A4	ENST00000418334.5_1_1:160144048-160152563:+|nuORF	ENST00000418334.5_1_1:160144048-160152563:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.2936401367188	2	630.29315	1258.57175	0.44958	0.00028337	0.63249	0.00039865	1.0821	0.00068202	630.2934810566402	53.08	0.80546	53.136	52.883	53.689	0.056259					63	29	3	0	0	0	0.14021	2	12539	12487;12539		39.95	0	1	1971000			20958	3658	11779	11780	26531;26532	26532					-0.04719524526899477
KYLNDLEDSY	10	Unmodified	_KYLNDLEDSY_					0	0	0		ENST00000418334.5_1_1:160144048-160152563:+|nuORF;ENSG00000132681|ENST00000368081|ATP1A4;ENST00000466526.1_1_1:160147295-160152563:+|nuORF;nc|ENSG00000132681|Q13733-2|ATP1A4	ENST00000418334.5_1_1:160144048-160152563:+|nuORF	ENST00000418334.5_1_1:160144048-160152563:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.2943725585938	2	630.29315	1258.57175	0.42513	0.00026796	0.75193	0.00047394	1.1771	0.0007419	630.2936119548464	53.319	0.81154	53.31	53.004	53.815	-0.0096054					81	30	4	0	0	0	0.25219	1	12540	12540		26.268	0	1	2291500			20959	3658	11779	11780	26533	26533					-0.04719524526899477
KYLPISHPRF	10	Unmodified	_KYLPISHPRF_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.77459716796875	3	419.908269	1256.70298	0.25595	0.00010748	4.1968	0.0017623	4.4528	0.0018698	419.90806530580346	37.711	1.0318	37.711	37.207	38.239	0					96	36	4	0	0	0	0.31825	1	7697	7697		9.2438	4.3468	1	357300			20960	4833	11780	11781	26534	26534					0.08489375422300327
KYLQFVAAL	9	Unmodified	_KYLQFVAAL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.812255859375	2	526.810585	1051.60662	0.71244	0.00037532	1.874	0.00098726	2.5865	0.0013626	526.8116562238472	64.643	0.24537	64.643	64.454	64.699	0					22	8	3	0	0	0	0.068501	1	16093	16093		46.021	17.534	1	430930			20961	7854	11781	11782	26535	26535					0.08287807862370755
KYLQFVAAL	9	Unmodified	_KYLQFVAAL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8117065429688	2	526.810585	1051.60662	0.6231	0.00032826	1.3944	0.00073457	2.0175	0.0010628	526.8113841698671	64.559	0.29771	64.652	64.42	64.718	0.09288					22	10	3	0	0	0	0.068501	1	16045	16045		46.021	17.534	1	423190			20962	7854	11781	11782	26536	26536					0.08287807862370755
KYLQGFVAF	9	Unmodified	_KYLQGFVAF_					0	0	0		ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.3216552734375	2	536.794935	1071.57532	0.70803	0.00038006	-0.42121	-0.0002261	0.28682	0.00015396	536.7950035093094	64.026	0.92646	64.026	63.746	64.673	0					65	33	3	0	0	0	0.1524	1	15929	15929		39.957	20.7	1	1982300			20963	1152	11782	11783	26537	26537					0.04239234828264671
KYLQGFVAF	9	Unmodified	_KYLQGFVAF_					0	0	0		ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.3217163085938	2	536.794935	1071.57532	0.51354	0.00027567	-0.28119	-0.00015094	0.23236	0.00012473	536.7951073904233	63.911	1.1113	64.003	63.711	64.822	0.09288					75	40	3	0	0	0	0.1524	1	15890	15890		39.957	21.822	1	1810700			20964	1152	11782	11783	26538	26538					0.04239234828264671
KYLQGFVAF	9	Unmodified	_KYLQGFVAF_					0	0	0		ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.3216552734375	2	536.794935	1071.57532	0.70988	0.00038106	-0.3263	-0.00017515	0.38358	0.0002059	536.7949644499676	64.031	0.95811	64.021	63.794	64.752	-0.0095291					69	34	3	0	0	0	0.11486	1	15920	15920		48.346	30.211	1	2234700			20965	1152	11782	11783	26539	26539					0.04239234828264671
KYLQILTSL	9	Unmodified	_KYLQILTSL_					0	0	0		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8292846679688	2	539.828975	1077.6434	0.5251	0.00028346	0.13133	7.0894E-05	0.65643	0.00035436	539.8289983721604	66.729	1.6008	66.729	66.396	67.997	0					141	55	4	0	0	0	4.3828E-07	3	16720	16673;16720;16763		163.04	51.749	1	4540400			20966	2232	11783	11784	26540;26541;26542	26541					0.10768059688280118
KYLQILTSL	9	Unmodified	_KYLQILTSL_					0	0	0		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8294067382812	2	539.828975	1077.6434	0.47974	0.00025898	0.099492	5.3709E-05	0.57923	0.00031269	539.8290147150924	66.595	1.9019	66.679	65.968	67.87	0.083832					151	67	4	0	0	0	0.00078391	3	16621	16621;16668;16712		125.53	33.038	1	4391800			20967	2232	11783	11784	26543;26544;26545	26543					0.10768059688280118
KYLQILTSL	9	Unmodified	_KYLQILTSL_					0	0	0		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8294067382812	2	539.828975	1077.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.564	1	66.55	66.05	67.05	-0.013588								0	0	0	1.6912E-06	1	16657	16657		125.53	14.242	1				20968	2232	11783	11784	26546	26546					0.10768059688280118
KYLQILTSL	9	Unmodified	_KYLQILTSL_					0	0	0		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.829345703125	2	539.828975	1077.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.723	1	66.709	66.209	67.209	-0.013588								0	0	0	3.6696E-07	1	16704	16704		137.42	37.625	1				20969	2232	11783	11784	26547	26547					0.10768059688280118
KYLQILTSL	9	Unmodified	_KYLQILTSL_					0	0	0		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8291625976562	2	539.828975	1077.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.878	1	66.864	66.364	67.364	-0.013588								0	0	0	3.6696E-07	1	16751	16751		137.42	33.676	1				20970	2232	11783	11784	26548	26548					0.10768059688280118
KYLQLTRNSF	10	Unmodified	_KYLQLTRNSF_					0	0	0		ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.9393005371094	3	423.903183	1268.68772	-0.35335	-0.00014978	0.10927	4.6322E-05	-0.24407	-0.00010346	423.9032364118525	42.401	0.50925	42.401	42.251	42.76	0					40	18	3	0	0	0	0.26331	1	9224	9224		37.251	28.007	1	533320			20971	5836	11784	11785	26549	26549					0.06412463834453774
KYLQLTRNSF	10	Unmodified	_KYLQLTRNSF_					0	0	0		ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.9395751953125	3	423.903183	1268.68772	0.052605	2.23E-05	-0.29013	-0.00012298	-0.23752	-0.00010069	423.9031003480401	41.911	0.47532	42.001	41.881	42.357	0.090252					27	16	2	0	0	0	0.25783	1	9113	9113		38.559	29.315	1	864960			20972	5836	11784	11785	26550	26550					0.06412463834453774
KYLQLTRNSF	10	Unmodified	_KYLQLTRNSF_					0	0	0		ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.93951416015625	3	423.903183	1268.68772	0.2155	9.135E-05	-0.53194	-0.00022549	-0.31644	-0.00013414	424.2372143219399	41.833	0.44534	41.929	41.79	42.235	0.096622					27	15	2	0	0	0	0.24783	1	9049	9049		42.068	42.068	1	512760			20973	5836	11784	11785	26551	26551					0.06412463834453774
KYLQSEEYSV	10	Unmodified	_KYLQSEEYSV_					0	0	0		ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.3038940429688	2	623.303518	1244.59248	0.074797	4.6621E-05	1.1039	0.00068803	1.1786	0.00073466	623.3042966357964	56.99	0.53578	57.069	56.829	57.365	0.078674					47	19	3	0	0	0	0.36015	1	13764	13764		10.8	0	1	535050			20974	8228	11785	11786	26552	26552					-0.02002934147230917
KYLQSEEYSV	10	Unmodified	_KYLQSEEYSV_					0	0	0		ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.3048095703125	2	623.303518	1244.59248	0.16432	0.00010242	1.2803	0.00079801	1.4446	0.00090043	623.3045275641458	57.099	0.57501	57.08	56.92	57.495	-0.019081					50	20	3	0	0	0	0.3001	1	13764	13764		20.415	0	1	626970			20975	8228	11785	11786	26553	26553					-0.02002934147230917
KYLQSEEYSV	10	Unmodified	_KYLQSEEYSV_					0	0	0		ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	623.303518	1244.59248	0.45219	0.00028185	0.99313	0.00061902	1.4453	0.00090087	623.304204258542	57.132	0.67202	57.132	56.823	57.495	0	0.03843	-0.00018037	NaN	20.415	55	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	591560			20976	8228	11785	11786							-0.02002934147230917
KYLQSTISF	9	Unmodified	_KYLQSTISF_					0	0	0		ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22317029-22324763:-|nuORF	ENST00000444502.5_1_22:22313806-22324763:-|nuORF	ENST00000444502.5_1_22:22313806-22324763:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7955322265625	2	543.795132	1085.57571	0.42163	0.00022928	0.45368	0.00024671	0.8753	0.00047599	543.7953033024716	52.01	0.84481	52.01	51.729	52.574	0					86	30	4	0	0	0	0.0013924	2	12163	12163;12206		117.76	57.687	1	3581300			20977	1524	11786	11787	26554;26555	26554					0.036346097574551095
KYLQSTISF	9	Unmodified	_KYLQSTISF_					0	0	0		ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22317029-22324763:-|nuORF	ENST00000444502.5_1_22:22313806-22324763:-|nuORF	ENST00000444502.5_1_22:22313806-22324763:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7954711914062	2	543.795132	1085.57571	0.5994	0.00032595	0.30467	0.00016568	0.90408	0.00049163	543.7952405100626	51.949	0.68814	52	51.729	52.417	0.050575					74	24	4	0	0	0	0.00024732	2	12146	12146;12193		132.38	63.275	1	3830500			20978	1524	11786	11787	26556;26557	26556					0.036346097574551095
KYLQSTISF	9	Unmodified	_KYLQSTISF_					0	0	0		ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22317029-22324763:-|nuORF	ENST00000444502.5_1_22:22313806-22324763:-|nuORF	ENST00000444502.5_1_22:22313806-22324763:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.795132	1085.57571	0.39946	0.00021722	0.5395	0.00029338	0.93896	0.0005106	543.7953625758186	52.156	1.2199	52.155	51.819	53.039	-0.00081253	0.1001	0.00010476	NaN	132.38	104	44	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3649100			20979	1524	11786	11787							0.036346097574551095
KYLRRLFRF	9	Unmodified	_KYLRRLFRF_					0	0	0		ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.59942626953125	3	433.599658	1297.77715	-0.2864	-0.00012418	-0.094676	-4.1052E-05	-0.38108	-0.00016524	433.599506197312	42.098	1.4565	42.098	41.825	43.281	0					90	41	3	0	0	0	0.19083	1	9128	9128		24.991	14.676	1	1210800			20980	2648	11787	11788	26558	26558					0.14016763304493907
KYLSEWDQWKR	11	Unmodified	_KYLSEWDQWKR_					0	0	0		ENST00000568469.5_1_16:18995385-19051723:+|nuORF;nc|ENSG00000170537|Q7Z402-2|TMC7;ENSG00000170537|ENST00000304381|TMC7	ENST00000568469.5_1_16:18995385-19051723:+|nuORF	ENST00000568469.5_1_16:18995385-19051723:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9854736328125	3	513.596531	1537.76776	0.16778	8.6173E-05	-0.8668	-0.00044519	-0.69902	-0.00035901	513.5959088384584	94.7	0.75378	94.783	94.228	94.981	0.082779					82	62	2	0	0	0	0.33349	1	25304	25304		0.36667	0.27183	1	214950			20981	6461	11788	11789	26559	26559					0.02038905437620997
KYLSGIAHF	9	Unmodified	_KYLSGIAHF_					0	0	0		ENST00000371720.5_1_9:139305120-139310743:+|nuORF;ENSG00000165688|ENST00000371717|PMPCA	ENST00000371720.5_1_9:139305120-139310743:+|nuORF	ENST00000371720.5_1_9:139305120-139310743:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.28466796875	2	518.284734	1034.55492	0.36288	0.00018808	0.14575	7.5541E-05	0.50863	0.00026362	518.2846775927121	43.409	0.97355	43.409	43.116	44.09	0					91	35	4	0	0	0	4.1361E-11	2	9541	9498;9541		189.78	141.43	1	3969300			20982	5992	11789	11790	26560;26561	26561					0.03902064168460129
KYLSGIAHF	9	Unmodified	_KYLSGIAHF_					0	0	0		ENST00000371720.5_1_9:139305120-139310743:+|nuORF;ENSG00000165688|ENST00000371717|PMPCA	ENST00000371720.5_1_9:139305120-139310743:+|nuORF	ENST00000371720.5_1_9:139305120-139310743:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2850952148438	2	518.284734	1034.55492	0.43984	0.00022796	0.1805	9.3549E-05	0.62033	0.00032151	518.2846637548512	43.073	0.98691	43.158	42.861	43.848	0.085197					111	35	5	0	0	0	1.3869E-07	3	9399	9399;9442;9489		174.73	126.38	1	3786500			20983	5992	11789	11790	26562;26563;26564	26562					0.03902064168460129
KYLSGIAHF	9	Unmodified	_KYLSGIAHF_					0	0	0		ENST00000371720.5_1_9:139305120-139310743:+|nuORF;ENSG00000165688|ENST00000371717|PMPCA	ENST00000371720.5_1_9:139305120-139310743:+|nuORF	ENST00000371720.5_1_9:139305120-139310743:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2847290039062	2	518.284734	1034.55492	0.18803	9.7452E-05	0.40136	0.00020802	0.58939	0.00030547	518.2847689038175	43.06	0.91672	43.146	42.795	43.712	0.086575					97	33	4	0	0	0	1.8227E-16	2	9383	9383;9428		205.78	157.43	1	3477400			20984	5992	11789	11790	26565;26566	26565					0.03902064168460129
KYLSIPAVF	9	Unmodified	_KYLSIPAVF_					0	0	0		nc|ENSG00000288705|P35504|UGT1A5;ENSG00000244474|ENST00000373409|UGT1A4	nc|ENSG00000288705|P35504|UGT1A5	nc|ENSG00000288705|P35504|UGT1A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.3058471679688	2	519.305136	1036.59572	0.40066	0.00020806	0.33345	0.00017316	0.73411	0.00038122	519.3051861860071	68.118	0.70384	68.118	67.732	68.436	0					53	25	3	0	0	0	0.074552	1	17114	17114		43.772	5.7984	1	629400			20985	8571	11790	11791	26567	26567					0.07888405488074568
KYLSIPAVF	9	Unmodified	_KYLSIPAVF_					0	0	0		nc|ENSG00000288705|P35504|UGT1A5;ENSG00000244474|ENST00000373409|UGT1A4	nc|ENSG00000288705|P35504|UGT1A5	nc|ENSG00000288705|P35504|UGT1A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.3052368164062	2	519.305136	1036.59572	0.35651	0.00018514	0.18953	9.8424E-05	0.54604	0.00028356	519.3051369286852	68.046	0.67355	68.03	67.7	68.373	-0.016296					52	23	3	0	0	0	0.088443	1	17107	17107		39.95	7.6442	1	641190			20986	8571	11790	11791	26568	26568					0.07888405488074568
KYLSIPAVF	9	Unmodified	_KYLSIPAVF_					0	0	0		nc|ENSG00000288705|P35504|UGT1A5;ENSG00000244474|ENST00000373409|UGT1A4	nc|ENSG00000288705|P35504|UGT1A5	nc|ENSG00000288705|P35504|UGT1A5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	519.305136	1036.59572	0.4186	0.00021738	0.1456	7.5611E-05	0.5642	0.00029299	519.3050920909752	67.954	0.6489	68.032	67.715	68.363	0.078041	-0.028093	-7.1668E-05	NaN	43.772	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	719820			20987	8571	11790	11791							0.07888405488074568
KYLSIPAVFF	10	Unmodified	_KYLSIPAVFF_					0	0	0		nc|ENSG00000288705|P35504|UGT1A5;ENSG00000244474|ENST00000373409|UGT1A4	nc|ENSG00000288705|P35504|UGT1A5	nc|ENSG00000288705|P35504|UGT1A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.8392944335938	2	592.839342	1183.66413	0.41096	0.00024363	-0.10005	-5.9315E-05	0.3109	0.00018432	592.8392585728583	80.457	0.58089	80.457	80.207	80.788	0					53	22	4	0	0	0	0.10215	2	20901	20901;20956		47.594	29.448	1	458870			20988	8571	11791	11792	26569;26570	26569					0.07964650067924595
KYLSIPAVFF	10	Unmodified	_KYLSIPAVFF_					0	0	0		nc|ENSG00000288705|P35504|UGT1A5;ENSG00000244474|ENST00000373409|UGT1A4	nc|ENSG00000288705|P35504|UGT1A5	nc|ENSG00000288705|P35504|UGT1A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.8403930664062	2	592.839342	1183.66413	0.32076	0.00019016	0.15485	9.1798E-05	0.47561	0.00028196	592.8394368717558	80.386	0.56293	80.451	80.213	80.776	0.065102					51	21	4	0	0	0	0.13784	2	20873	20873;20928		40.239	23.126	1	413350			20989	8571	11791	11792	26571;26572	26571					0.07964650067924595
KYLSIPAVFF	10	Unmodified	_KYLSIPAVFF_					0	0	0		nc|ENSG00000288705|P35504|UGT1A5;ENSG00000244474|ENST00000373409|UGT1A4	nc|ENSG00000288705|P35504|UGT1A5	nc|ENSG00000288705|P35504|UGT1A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.8394775390625	2	592.839342	1183.66413	0.39854	0.00023627	0.043532	2.5807E-05	0.44207	0.00026208	592.839136765412	80.556	0.5804	80.529	80.233	80.814	-0.026825					52	20	4	0	0	0	0.13784	1	20911	20911		40.239	22.093	1	535980			20990	8571	11791	11792	26573	26573					0.07964650067924595
KYLSIPTVF	9	Unmodified	_KYLSIPTVF_					0	0	0		nc|ENSG00000288702|P35503|UGT1A3	nc|ENSG00000288702|P35503|UGT1A3	nc|ENSG00000288702|P35503|UGT1A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.3106079101562	2	534.310418	1066.60628	0.4972	0.00026566	0.092177	4.9251E-05	0.58938	0.00031491	534.310611881877	68.323	1.6156	68.323	67.309	68.924	0					119	58	4	0	0	0	0.0073901	4	17213	17163;17213;17307;17318		83.429	27.252	1	2735400			20991	13008	11792	11793	26574;26575;26576;26577	26575					0.07564388142509415
KYLSIPTVF	9	Unmodified	_KYLSIPTVF_					0	0	0		nc|ENSG00000288702|P35503|UGT1A3	nc|ENSG00000288702|P35503|UGT1A3	nc|ENSG00000288702|P35503|UGT1A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.3106079101562	2	534.310418	1066.60628	0.27412	0.00014646	-0.093304	-4.9853E-05	0.18082	9.6612E-05	534.3103184649125	68.269	0.96526	68.34	67.969	68.934	0.071938					90	35	4	0	0	0	0.0028542	2	17186	17186;17283		103.42	38.184	1	2983100			20992	13008	11792	11793	26578;26579	26578					0.07564388142509415
KYLSIPTVF	9	Unmodified	_KYLSIPTVF_					0	0	0		nc|ENSG00000288702|P35503|UGT1A3	nc|ENSG00000288702|P35503|UGT1A3	nc|ENSG00000288702|P35503|UGT1A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.310791015625	2	534.310418	1066.60628	0.53376	0.00028519	-0.22732	-0.00012146	0.30644	0.00016374	534.3103019853153	68.355	1.0987	68.336	67.963	69.062	-0.01915					88	39	3	0	0	0	0.0073901	3	17211	17160;17211;17310		83.429	27.252	1	2935100			20993	13008	11792	11793	26580;26581;26582	26581					0.07564388142509415
KYLSIPTVFF	10	Unmodified	_KYLSIPTVFF_					0	0	0		nc|ENSG00000288702|P35503|UGT1A3	nc|ENSG00000288702|P35503|UGT1A3	nc|ENSG00000288702|P35503|UGT1A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.844970703125	2	607.844625	1213.6747	0.39658	0.00024106	0.10352	6.2921E-05	0.5001	0.00030398	607.8445214972237	80.185	0.78079	80.185	79.926	80.707	0					70	28	3	0	0	0	0.10152	4	20842	20795;20842;20891;20941		47.732	20.103	1	1367300			20994	13008	11793	11794	26583;26584;26585;26586	26584					0.07640632722359442
KYLSIPTVFF	10	Unmodified	_KYLSIPTVFF_					0	0	0		nc|ENSG00000288702|P35503|UGT1A3	nc|ENSG00000288702|P35503|UGT1A3	nc|ENSG00000288702|P35503|UGT1A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.8449096679688	2	607.844625	1213.6747	0.37954	0.0002307	0.14898	9.0555E-05	0.52851	0.00032125	607.8445516839322	80.136	0.82765	80.201	79.921	80.748	0.065094					71	31	3	0	0	0	0.030754	4	20811	20766;20811;20854;20903		63.227	35.599	1	1604500			20995	13008	11793	11794	26587;26588;26589;26590	26588					0.07640632722359442
KYLSIPTVFF	10	Unmodified	_KYLSIPTVFF_					0	0	0		nc|ENSG00000288702|P35503|UGT1A3	nc|ENSG00000288702|P35503|UGT1A3	nc|ENSG00000288702|P35503|UGT1A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.8449096679688	2	607.844625	1213.6747	0.313	0.00019026	0.13898	8.4478E-05	0.45198	0.00027474	607.8445576725111	80.265	0.83866	80.238	79.949	80.788	-0.026825					75	29	3	0	0	0	0.030754	4	20842	20793;20842;20886;20934		63.227	28.679	1	1690500			20996	13008	11793	11794	26591;26592;26593;26594	26592					0.07640632722359442
KYLSLSNSF	9	Unmodified	_KYLSLSNSF_					0	0	0		ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3;chr4:186082550-186082743|473|10.7|0.4|4.75|+|ENST00000513189|TLR3,TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.7798461914062	2	529.779482	1057.54441	0.49518	0.00026234	-0.13601	-7.2057E-05	0.35917	0.00019028	529.7795160834254	51.776	0.58674	51.776	51.536	52.123	0					55	17	4	0	0	0	5.7869E-11	2	12138	12138;12165		184.36	62.176	1	2663200			20997	5836	11794	11795	26595;26596	26595					0.017940367233904908
KYLSLSNSF	9	Unmodified	_KYLSLSNSF_					0	0	0		ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3;chr4:186082550-186082743|473|10.7|0.4|4.75|+|ENST00000513189|TLR3,TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.7797241210938	2	529.779482	1057.54441	0.42057	0.00022281	-0.033193	-1.7585E-05	0.38738	0.00020522	529.7795665982026	51.74	0.52798	51.787	51.528	52.056	0.046574					46	16	3	0	0	0	5.7869E-11	2	12120	12120;12153		184.36	73.681	1	2915700			20998	5836	11794	11795	26597;26598	26597					0.017940367233904908
KYLSLSNSF	9	Unmodified	_KYLSLSNSF_					0	0	0		ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3;chr4:186082550-186082743|473|10.7|0.4|4.75|+|ENST00000513189|TLR3,TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3002319335938	2	529.779482	1057.54441	0.29445	0.000156	0.10018	5.3074E-05	0.39463	0.00020907	529.7796846744061	51.92	0.66961	51.919	51.576	52.246	-0.00081253					70	23	4	0	0	0	0.0023309	1	12194	12194		107.56	43.603	1	2624600			20999	5836	11794	11795	26599	26599					0.017940367233904908
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8307495117188	2	591.829506	1181.64446	0.45858	0.0002714	-0.45405	-0.00026872	0.004528	2.6798E-06	591.8300194058314	57.604	2.7898	57.604	57.216	60.006	0					334	98	6	0	0	0	4.613E-09	9	13883	13883;13927;13978;14026;14070;14115;14159;14429;14486		174.48	98.721	1	142290000			21000	4044	11795	11796	26600;26601;26602;26603;26604;26605;26606;26607;26608	26600					0.06090274057191891
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.7872314453125	2	591.829506	1181.64446	0.37412	0.00022141	0.12595	7.4544E-05	0.50007	0.00029596	591.829308943432	61.914	1.3875	61.914	61.569	62.956	0					67	51	2	0	0	0	0.30076	1	15541	15541		22.658	5.5452	1	281230			21001	4044	11795	11796	26609	26609					0.06090274057191891
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.876708984375	2	591.829506	1181.64446	0.55286	0.0003272	0.2263	0.00013393	0.77916	0.00046113	591.8293611601599	66.254	1.6752	66.254	65.431	67.106	0					91	59	2	0	0	0	0.31473	1	16793	16793		13.615	4.0709	1	208630			21002	4044	11795	11796	26610	26610					0.06090274057191891
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.7534790039062	2	591.829506	1181.64446	0.485	0.00028704	1.0022	0.00059313	1.4872	0.00088017	591.8296645467105	79.549	0.19714	79.549	79.441	79.638	0					10	7	2	0	0	0	0.31838	1	20618	20618		7.609	1.8771	1	67098			21003	4044	11795	11796	26611	26611					0.06090274057191891
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.83056640625	2	591.829506	1181.64446	0.42759	0.00025306	-0.44801	-0.00026515	-0.020424	-1.2087E-05	591.8299942516044	57.419	2.881	57.505	57.156	60.037	0.085621					332	103	6	0	0	0	6.9688E-14	9	13836	13787;13836;13885;13928;13978;14029;14080;14592;14603		195.04	118.21	1	163730000			21004	4044	11795	11796	26612;26613;26614;26615;26616;26617;26618;26619;26620	26613					0.06090274057191891
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.321044921875	2	591.829506	1181.64446	-0.079728	-4.7185E-05	1.5026	0.0008893	1.4229	0.00084212	591.8301957375672	60.154	0.31555	60.249	60.131	60.447	0.095089					15	11	2	0	0	0	0.12775	1	14672	14672		59.368	11.023	1	383900			21005	4044	11795	11796	26621	26621					0.06090274057191891
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.78759765625	2	591.829506	1181.64446	0.3248	0.00019222	-0.27184	-0.00016088	0.052957	3.1342E-05	591.8291715013357	61.975	1.8031	62.072	61.538	63.341	0.096985					106	65	2	0	0	0	0.2541	1	15397	15397		37.075	13.054	1	310660			21006	4044	11795	11796	26622	26622					0.06090274057191891
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.87646484375	2	591.829506	1181.64446	0.42965	0.00025428	0.089572	5.3011E-05	0.51922	0.00030729	591.8294302529592	66.465	2.179	66.549	65.455	67.634	0.083832					107	78	2	0	0	0	0.31401	1	16768	16768		14.405	1.3629	1	197320			21007	4044	11795	11796	26623	26623					0.06090274057191891
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.830810546875	2	591.829506	1181.64446	0.29706	0.00017581	-0.25824	-0.00015284	0.038815	2.2972E-05	591.8301385590835	57.635	2.7319	57.618	57.259	59.991	-0.0172					336	98	6	0	0	0	6.9628E-10	10	13901	13855;13901;13925;13950;14000;14048;14092;14141;14184;14421		179.28	108.95	1	148150000			21008	4044	11795	11796	26624;26625;26626;26627;26628;26629;26630;26631;26632;26633	26625					0.06090274057191891
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.2634887695312	2	591.829506	1181.64446	0.44806	0.00026517	-0.70655	-0.00041816	-0.2585	-0.00015299	591.8287573336737	68.459	1.112	68.44	68.014	69.126	-0.019157					60	39	2	0	0	0	0.31696	1	17169	17169		10.151	2.8613	1	317040			21009	4044	11795	11796	26634	26634					0.06090274057191891
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.876708984375	2	591.829506	1181.64446	0.23144	0.00013697	0.92755	0.00054895	1.159	0.00068592	592.3315812973826	66.99	1.2674	66.976	66.379	67.647	-0.013596					61	44	2	0	0	0	0.31401	1	16806	16806		14.405	1.3629	1	152720			21010	4044	11795	11796	26635	26635					0.06090274057191891
KYLTEGLLQF	10	Unmodified	_KYLTEGLLQF_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3372802734375	2	606.337164	1210.65977	0.35147	0.00021311	0.015981	9.6896E-06	0.36745	0.0002228	606.3372601853331	69.744	1.5616	69.744	69.428	70.989	0					193	56	5	0	0	0	5.7089E-09	7	17624	17582;17624;17668;17715;17764;17820;17887		173.14	106.68	1	14062000			21011	1207	11796	11797	26636;26637;26638;26639;26640;26641;26642	26637					0.06287140854374229
KYLTEGLLQF	10	Unmodified	_KYLTEGLLQF_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3374633789062	2	606.337164	1210.65977	0.36926	0.0002239	-0.031282	-1.8967E-05	0.33798	0.00020493	606.3372607124933	69.714	1.5905	69.78	69.459	71.05	0.066048					184	56	5	0	0	0	5.7089E-09	7	17662	17575;17620;17662;17705;17748;17796;17847		173.14	97.378	1	14880000			21012	1207	11796	11797	26643;26644;26645;26646;26647;26648;26649	26645					0.06287140854374229
KYLTEGLLQF	10	Unmodified	_KYLTEGLLQF_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3375854492188	2	606.337164	1210.65977	0.27697	0.00016794	0.091803	5.5663E-05	0.36877	0.0002236	606.3373530032461	69.789	1.5388	69.766	69.462	71.001	-0.022087					186	55	5	0	0	0	1.5151E-13	6	17634	17634;17684;17735;17788;17837;17893		185.27	95.871	1	14752000			21013	1207	11796	11797	26650;26651;26652;26653;26654;26655	26650					0.06287140854374229
KYLTNLLHSA	10	Unmodified	_KYLTNLLHSA_					0	0	0			REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5	REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3250732421875	2	580.327131	1158.63971	0.0081984	4.7577E-06	-1.327	-0.00077007	-1.3188	-0.00076531	580.3251437089202	18.303	0.45375	18.245	18.004	18.458	-0.058174					41	15	4	0	0	0	0.40106	1	1929	1929		3.2813	0.28607	1	153620	+		21014	19334	11797	11798	26656	26656					0.06673389914431027
KYLTVKDYL	9	Unmodified	_KYLTVKDYL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.8264770507812	2	571.826432	1141.63831	0.47341	0.00027071	0.41488	0.00023724	0.88829	0.00050795	571.8265000265159	47.765	0.34532	47.809	47.611	47.957	0.04332					18	12	2	0	0	0	0.0016724	1	10878	10878		114.19	76.212	1	1378100			21015	5256	11798	11799	26657	26657					0.07315755825652559
KYLTVKDYL	9	Unmodified	_KYLTVKDYL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	571.826432	1141.63831	0.70965	0.0004058	-0.66088	-0.00037791	0.048773	2.789E-05	572.3275585078778	47.845	0.35407	47.892	47.565	47.919	0.047523	0.04184	-0.0007785	NaN	114.19	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1588100			21016	5256	11798	11799							0.07315755825652559
KYLVIGDLL	9	Unmodified	_KYLVIGDLL_					0	0	0		ENST00000591770.1_1_17:76164697-76167257:+|nuORF;ENSG00000108639|ENST00000225777|SYNGR2;nc|ENSG00000108639|O43760-2|SYNGR2	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3182983398438	2	517.318243	1032.62193	0.4701	0.00024319	-0.49193	-0.00025448	-0.02183	-1.1293E-05	517.3179890796813	72.788	0.71066	72.788	72.48	73.191	0					43	25	2	0	0	0	0.037019	2	18545	18545;18592		57.722	28.64	1	502010			21017	2203	11799	11800	26658;26659	26658					0.10692674659549084
KYLVIGDLL	9	Unmodified	_KYLVIGDLL_					0	0	0		ENST00000591770.1_1_17:76164697-76167257:+|nuORF;ENSG00000108639|ENST00000225777|SYNGR2;nc|ENSG00000108639|O43760-2|SYNGR2	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3182373046875	2	517.318243	1032.62193	0.34345	0.00017767	-0.35552	-0.00018392	-0.012075	-6.2468E-06	517.3179590524574	72.731	0.85172	72.785	72.484	73.335	0.053841					50	30	2	0	0	0	0.018449	2	18533	18533;18591		66.457	30.33	1	532410			21018	2203	11799	11800	26660;26661	26660					0.10692674659549084
KYLVIGDLL	9	Unmodified	_KYLVIGDLL_					0	0	0		ENST00000591770.1_1_17:76164697-76167257:+|nuORF;ENSG00000108639|ENST00000225777|SYNGR2;nc|ENSG00000108639|O43760-2|SYNGR2	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.3182373046875	2	517.318243	1032.62193	0.40983	0.00021201	-0.50733	-0.00026245	-0.097508	-5.0443E-05	517.3179411138726	72.83	0.77535	72.8	72.516	73.291	-0.029305					45	27	2	0	0	0	0.037019	1	18563	18563		57.722	28.64	1	520650			21019	2203	11799	11800	26662	26662					0.10692674659549084
KYLVLANML	9	Oxidation (M)	_KYLVLANM(Oxidation (M))L_		KYLVLANM(1)L		KYLVLANM(120)L	0	0	1		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.81005859375	2	540.809728	1079.6049	0.85826	0.00046415	-0.25426	-0.00013751	0.60399	0.00032664	540.809504777052	54.756	0.73059	54.74	54.17	54.9	-0.015923					63	25	4	0	0	0	0.0013036	3	13015	12978;13015;13023		118.89	82.768	1	4624500			21020	6044	11800	11801	26663;26664;26665	26664		707			0.06828430782070427
KYLVLANML	9	Oxidation (M)	_KYLVLANM(Oxidation (M))L_					0	0	1		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	540.809728	1079.6049	0.80722	0.00043655	-0.54882	-0.00029681	0.2584	0.00013975	540.809448482098	54.637	0.62264	54.637	54.162	54.785	0	-0.032513	-0.00015523	NaN	118.89	60	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4621400			21021	6044	11800	11801				707			0.06828430782070427
KYLVLANML	9	Oxidation (M)	_KYLVLANM(Oxidation (M))L_					0	0	1		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	540.809728	1079.6049	0.76797	0.00041532	-0.4379	-0.00023682	0.33006	0.0001785	540.8094298697932	54.568	0.5324	54.631	54.272	54.805	0.063202	-0.038019	-3.5261E-05	NaN	118.89	57	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4270000			21022	6044	11800	11801				707			0.06828430782070427
KYLWYPIRK	9	Unmodified	_KYLWYPIRK_					0	0	0			REV__ENST00000446317.1_1_20:3470413-3470686:-|nuORF	REV__ENST00000446317.1_1_20:3470413-3470686:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.87109375	2	633.871508	1265.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.58	1	112.58	112.08	113.08	0								0	0	0	0.2672	1	29257	29257		0.52476	0	1		+		21023	21080	11801	11802	26666	26666					0.10622849944707013
KYLWYPIRK	9	Unmodified	_KYLWYPIRK_					0	0	0			REV__ENST00000446317.1_1_20:3470413-3470686:-|nuORF	REV__ENST00000446317.1_1_20:3470413-3470686:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.872802734375	2	633.871508	1265.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.08	1	115.1	114.6	115.6	0.018738								0	0	0	0.26829	1	29911	29911		0	0	1		+		21024	21080	11801	11802	26667	26667					0.10622849944707013
KYLWYPIRK	9	Unmodified	_KYLWYPIRK_					0	0	0			REV__ENST00000446317.1_1_20:3470413-3470686:-|nuORF	REV__ENST00000446317.1_1_20:3470413-3470686:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8717041015625	2	633.871508	1265.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.96	1	119.98	119.48	120.48	0.027756								0	0	0	0.2672	1	31008	31008		0.52476	0	1		+		21025	21080	11801	11802	26668	26668					0.10622849944707013
KYLYRDVIL	9	Unmodified	_KYLYRDVIL_					0	0	0		ZNF26|p.T119Pfs*17|1|0.19|ENSG00000198393|chr12:133010231-133010231|A/-|frameshift_variant;ENSG00000198393|ENST00000328654|ZNF26	ZNF26|p.T119Pfs*17|1|0.19|ENSG00000198393|chr12:133010231-133010231|A/-|frameshift_variant	ZNF26|p.T119Pfs*17|1|0.19|ENSG00000198393|chr12:133010231-133010231|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8297729492188	2	591.847699	1181.68084	0.45658	0.00027023	-0.42145	-0.00024944	0.035128	2.079E-05	591.8473233921554	58.807	0.5382	58.898	58.645	59.183	0.091305					40	18	3	0	0	0	0.26612	1	14347	14347		13.906	0.86358	1	303970			21026	8068	11802	11803	26669	26669					0.09727150953904129
KYLYVDKNF	9	Unmodified	_KYLYVDKNF_					0	0	0		ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.3165893554688	2	595.316232	1188.61791	0.43409	0.00025842	0.17465	0.00010397	0.60874	0.00036239	595.3163311702386	40.801	0.90863	40.801	40.473	41.382	0					94	33	5	0	0	0	1.2732000000000002E-25	2	8711	8711;8755		249.55	186.98	1	2074700			21027	1574	11803	11804	26670;26671	26670					0.031145851658493484
KYLYVDKNF	9	Unmodified	_KYLYVDKNF_					0	0	0		ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.3164672851562	2	595.316232	1188.61791	0.66486	0.0003958	-0.11742	-6.9904E-05	0.54744	0.0003259	595.3161305277127	40.469	0.88328	40.562	40.254	41.138	0.09267					88	32	4	0	0	0	8.5057E-24	1	8648	8648		233.47	179.64	1	2281800			21028	1574	11803	11804	26672	26672					0.031145851658493484
KYLYVDKNF	9	Unmodified	_KYLYVDKNF_					0	0	0		ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.3165893554688	2	595.316232	1188.61791	0.51464	0.00030638	0.054002	3.2148E-05	0.56864	0.00033852	595.3162305139716	40.419	0.86333	40.518	40.26	41.123	0.099407					79	31	4	0	0	0	7.3424E-17	1	8642	8642		218.2	165.93	1	2543300			21029	1574	11803	11804	26673	26673					0.031145851658493484
KYMAEALLL	9	Oxidation (M)	_KYM(Oxidation (M))AEALLL_		KYM(1)AEALLL		KYM(83)AEALLL	0	0	1		ENSG00000154174|ENST00000284320|TOMM70;ENST00000492171.1_1_3:100096542-100100595:-|nuORF	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2941284179688	2	534.293911	1066.57327	0.74228	0.0003966	-0.44474	-0.00023762	0.29754	0.00015897	534.2937635332346	54.035	1.5494	54.035	53.648	55.198	0					167	56	5	0	0	0	0.0079761	2	12789	12789;12839		82.529	50.224	1	16089000			21030	5109	11804	11805	26674;26675	26674		627			0.04264438028144468
KYMAEALLL	9	Oxidation (M)	_KYM(Oxidation (M))AEALLL_		KYM(1)AEALLL		KYM(93)AEALLL	0	0	1		ENSG00000154174|ENST00000284320|TOMM70;ENST00000492171.1_1_3:100096542-100100595:-|nuORF	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2943115234375	2	534.293911	1066.57327	0.38391	0.00020512	-0.070617	-3.773E-05	0.3133	0.00016739	534.2939563062414	53.998	1.6192	54.058	53.614	55.233	0.059368					163	60	4	0	0	0	0.0042138	2	12814	12765;12814		92.653	52.696	1	15536000			21031	5109	11804	11805	26676;26677	26677		627			0.04264438028144468
KYMAEALLL	9	Oxidation (M)	_KYM(Oxidation (M))AEALLL_		KYM(1)AEALLL		KYM(76)AEALLL	0	0	1		ENSG00000154174|ENST00000284320|TOMM70;ENST00000492171.1_1_3:100096542-100100595:-|nuORF	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.294189453125	2	534.293911	1066.57327	0.62874	0.00033593	-0.58808	-0.00031421	0.040662	2.1726E-05	534.2936899909836	54.171	1.6728	54.155	53.738	55.411	-0.015923					163	60	4	0	0	0	0.012386	1	12883	12883		75.761	39.717	1	16947000			21032	5109	11804	11805	26678	26678		627			0.04264438028144468
KYMDINFDF	9	Oxidation (M)	_KYM(Oxidation (M))DINFDF_		KYM(1)DINFDF		KYM(160)DINFDF	0	0	1		ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G	ENSG00000176658|ENST00000318217|MYO1D;ENSG00000136286|ENST00000258787|MYO1G	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.7686157226562	2	604.768257	1207.52196	0.47607	0.00028791	-0.13669	-8.2669E-05	0.33938	0.00020524	604.7681638147989	61.063	3.854	61.063	60.331	64.185	0					301	142	5	0	0	0	4.216E-07	6	15011	14913;14960;15011;15060;15109;15162		163.69	38.649	1	22507000			21033	6939;3969	11805	11806	26679;26680;26681;26682;26683;26684	26681		496			-0.07349930736563692
KYMDINFDF	9	Oxidation (M)	_KYM(Oxidation (M))DINFDF_		KYM(1)DINFDF		KYM(190)DINFDF	0	0	1		ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G	ENSG00000176658|ENST00000318217|MYO1D;ENSG00000136286|ENST00000258787|MYO1G	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.7684326171875	2	604.768257	1207.52196	0.45696	0.00027635	-0.13127	-7.9387E-05	0.32569	0.00019697	604.7681552145962	61.048	3.2648	61.145	60.639	63.904	0.096989					285	118	5	0	0	0	4.1496E-11	6	14928	14883;14928;14977;15026;15078;15128		189.73	41.463	1	21354000			21034	6939;3969	11805	11806	26685;26686;26687;26688;26689;26690	26686		496			-0.07349930736563692
KYMDINFDF	9	Oxidation (M)	_KYM(Oxidation (M))DINFDF_		KYM(1)DINFDF		KYM(180)DINFDF	0	0	1		ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G	ENSG00000176658|ENST00000318217|MYO1D;ENSG00000136286|ENST00000258787|MYO1G	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.7682495117188	2	604.768257	1207.52196	0.31515	0.00019059	0.098942	5.9837E-05	0.41409	0.00025043	604.76827347764	61.153	3.6069	61.143	60.546	64.153	-0.0094566					281	132	4	0	0	0	9.5135E-08	6	14952	14907;14952;14998;15048;15097;15151		176.43	43.375	1	24601000			21035	6939;3969	11805	11806	26691;26692;26693;26694;26695;26696	26692		496			-0.07349930736563692
KYMDVQFDF	9	Oxidation (M)	_KYM(Oxidation (M))DVQFDF_		KYM(1)DVQFDF		KYM(190)DVQFDF	0	0	1		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.P889Lfs*40|1|0.02|ENSG00000197879|chr17:1468441-1468442|-/TTGCA|frameshift_variant;MYO1C|p.L335Sfs*4|1|0.24|ENSG00000197879|chr17:1479609-1479609|G/-|frameshift_variant	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.7686157226562	2	604.768257	1207.52196	0.6714	0.00040604	-0.67785	-0.00040994	-0.0064566	-3.9047E-06	604.7687350452057	56.551	4.2018	56.551	56.13	60.331	0					387	151	6	0	0	0	4.1496E-11	11	13550	13504;13550;13600;13651;13705;13753;13801;13848;13895;13947;14169		189.73	44.602	1	101530000			21036	8008	11806	11807	26697;26698;26699;26700;26701;26702;26703;26704;26705;26706;26707	26698		875			-0.07349930736563692
KYMDVQFDF	9	Oxidation (M)	_KYM(Oxidation (M))DVQFDF_		KYM(1)DVQFDF		KYM(180)DVQFDF	0	0	1		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.P889Lfs*40|1|0.02|ENSG00000197879|chr17:1468441-1468442|-/TTGCA|frameshift_variant;MYO1C|p.L335Sfs*4|1|0.24|ENSG00000197879|chr17:1479609-1479609|G/-|frameshift_variant	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.7684936523438	2	604.768257	1207.52196	0.85651	0.00051799	-0.72727	-0.00043983	0.12924	7.816E-05	604.7686607256923	56.416	3.8843	56.495	56.146	60.03	0.078674					381	141	6	0	0	0	9.5135E-08	10	13476	13476;13526;13577;13625;13690;13739;13785;13840;13891;14117		176.43	43.375	1	115640000			21037	8008	11806	11807	26708;26709;26710;26711;26712;26713;26714;26715;26716;26717	26708		875			-0.07349930736563692
KYMDVQFDF	9	Oxidation (M)	_KYM(Oxidation (M))DVQFDF_		KYM(1)DVQFDF		KYM(170)DVQFDF	0	0	1		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.P889Lfs*40|1|0.02|ENSG00000197879|chr17:1468441-1468442|-/TTGCA|frameshift_variant;MYO1C|p.L335Sfs*4|1|0.24|ENSG00000197879|chr17:1479609-1479609|G/-|frameshift_variant	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.7686767578125	2	604.768257	1207.52196	0.83435	0.00050459	-0.75925	-0.00045917	0.075098	4.5417E-05	604.7687467409032	56.764	3.5086	56.744	56.297	59.806	-0.019077					369	127	6	0	0	0	1.6536E-07	10	13603	13557;13603;13653;13698;13749;13827;13877;13927;13977;14186		173.69	43.914	1	136370000			21038	8008	11806	11807	26718;26719;26720;26721;26722;26723;26724;26725;26726;26727	26719		875			-0.07349930736563692
KYMEDVTQI	9	Oxidation (M)	_KYM(Oxidation (M))EDVTQI_		KYM(1)EDVTQI		KYM(55)EDVTQI	0	0	1		nc|ENSG00000170836|O15297-2|PPM1D;ENSG00000170836|ENST00000305921|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7739868164062	2	571.773539	1141.53253	0.34389	0.00019663	1.2957	0.00074085	1.6396	0.00093748	571.7745754379227	36.109	0.84209	36.109	35.882	36.724	0					76	30	4	0	0	0	0.043711	1	7304	7304		55.235	17.059	1	704720			21039	6483	11807	11808	26728	26728		757			-0.03257948082114126
KYMEDVTQI	9	Oxidation (M)	_KYM(Oxidation (M))EDVTQI_		KYM(1)EDVTQI		KYM(53)EDVTQI	0	0	1		nc|ENSG00000170836|O15297-2|PPM1D;ENSG00000170836|ENST00000305921|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.7735595703125	2	571.773539	1141.53253	0.49861	0.00028509	0.86709	0.00049578	1.3657	0.00078087	571.774509040683	35.989	0.71384	36.071	35.823	36.537	0.082359					54	25	4	0	0	0	0.048871	1	7263	7263		53.317	25.688	1	690770			21040	6483	11807	11808	26729	26729		757			-0.03257948082114126
KYMEDVTQI	9	Oxidation (M)	_KYM(Oxidation (M))EDVTQI_		KYM(1)EDVTQI		KYM(55)EDVTQI	0	0	1		nc|ENSG00000170836|O15297-2|PPM1D;ENSG00000170836|ENST00000305921|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	nc|ENSG00000170836|O15297-2|PPM1D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7738647460938	2	571.773539	1141.53253	0.4721	0.00026993	1.0981	0.00062787	1.5702	0.00089781	571.7743280415586	35.991	0.74285	36.077	35.818	36.561	0.08625					59	26	3	0	0	0	0.043711	1	7247	7247		55.235	20.833	1	722330			21041	6483	11807	11808	26730	26730		757			-0.03257948082114126
KYMEDYHQF	9	Oxidation (M)	_KYM(Oxidation (M))EDYHQF_		KYM(1)EDYHQF		KYM(98)EDYHQF	0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.7684936523438	2	638.768788	1275.52302	0.46195	0.00029508	-0.28653	-0.00018303	0.17542	0.00011205	638.768464270558	30.078	0.52662	30.078	29.833	30.359	0					44	18	3	0	0	0	0.0035713	2	5477	5430;5477		97.741	73.72	1	608340			21042	2849	11808	11809	26731;26732	26732		361			-0.10371716367671979
KYMEDYHQF	9	Oxidation (M)	_KYM(Oxidation (M))EDYHQF_		KYM(1)EDYHQF		KYM(100)EDYHQF	0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.768798828125	2	638.768788	1275.52302	0.58422	0.00037318	-0.5667	-0.00036199	0.017516	1.1189E-05	638.7683608241239	30.048	0.61981	30.068	29.812	30.431	0.020369					54	21	3	0	0	0	0.0031966	2	5433	5433;5487		100.71	81.452	1	552260			21043	2849	11808	11809	26733;26734	26733		361			-0.10371716367671979
KYMEDYHQF	9	Oxidation (M)	_KYM(Oxidation (M))EDYHQF_		KYM(1)EDYHQF		KYM(82)EDYHQF	0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.1814880371094	3	426.181618	1275.52302	-0.025419	-1.0833E-05	-0.49964	-0.00021294	-0.52506	-0.00022377	426.1814052938887	30.045	1.0518	30.065	29.661	30.712	0.019138					101	36	4	0	0	0	0.0083763	2	5441	5441;5484		81.915	68.397	1	1632100			21044	2849	11808	11809	26735;26736	26735		361			-0.10371716367671979
KYMEDYHQF	9	Oxidation (M)	_KYM(Oxidation (M))EDYHQF_		KYM(1)EDYHQF		KYM(110)EDYHQF	0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.7687377929688	2	638.768788	1275.52302	0.25727	0.00016434	-0.15706	-0.00010033	0.10021	6.401E-05	638.7685878509152	30.045	0.638	30.072	29.838	30.476	0.027157					58	21	4	0	0	0	0.0023309	2	5429	5429;5479		107.56	81.295	1	681520			21045	2849	11808	11809	26737;26738	26737		361			-0.10371716367671979
KYMEDYHQF	9	Oxidation (M)	_KYM(Oxidation (M))EDYHQF_		KYM(1)EDYHQF		KYM(77)EDYHQF	0	0	1		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.1814270019531	3	426.181618	1275.52302	-0.33211	-0.00014154	-0.026985	-1.15E-05	-0.3591	-0.00015304	426.181545320461	30.078	1.0057	30.105	29.728	30.733	0.027157					106	34	5	0	0	0	0.011547	1	5447	5447		77.049	64.821	1	1548200			21046	2849	11808	11809	26739	26739		361			-0.10371716367671979
KYMETIEKL	9	Oxidation (M)	_KYM(Oxidation (M))ETIEKL_		KYM(1)ETIEKL		KYM(120)ETIEKL	0	0	1		nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8074951171875	2	585.807382	1169.60021	0.12877	7.5434E-05	0.4406	0.00025811	0.56937	0.00033354	585.8075582759177	31.401	0.7392	31.401	31.09	31.829	0					65	26	4	0	0	0	0.0013573	2	5836	5836;5885		118.21	50.536	1	1661400			21047	5625	11809	11810	26740;26741	26740		676			0.022195018487082052
KYMETIEKL	9	Oxidation (M)	_KYM(Oxidation (M))ETIEKL_		KYM(1)ETIEKL		KYM(150)ETIEKL	0	0	1		nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8077392578125	2	585.807382	1169.60021	0.03975	2.3286E-05	0.39392	0.00023076	0.43367	0.00025405	585.807545871664	31.392	0.69282	31.435	31.13	31.823	0.042366					65	24	4	0	0	0	3.9524E-05	2	5875	5830;5875		150.62	64.287	1	1503800			21048	5625	11809	11810	26742;26743	26743		676			0.022195018487082052
KYMETIEKL	9	Oxidation (M)	_KYM(Oxidation (M))ETIEKL_		KYM(1)ETIEKL		KYM(120)ETIEKL	0	0	1		nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8077392578125	2	585.807382	1169.60021	0.31012	0.00018167	0.24649	0.00014439	0.5566	0.00032606	585.8074535634546	31.301	0.84757	31.342	31.042	31.89	0.040991					70	30	4	0	0	0	0.00082904	2	5850	5802;5850		124.95	60.993	1	1652700			21049	5625	11809	11810	26744;26745	26745		676			0.022195018487082052
KYMKEKLLF	9	Oxidation (M)	_KYM(Oxidation (M))KEKLLF_		KYM(1)KEKLLF		KYM(76)KEKLLF	0	0	1		ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.3440551757812	2	608.343935	1214.67332	0.29443	0.00017912	0.0090304	5.4936E-06	0.30346	0.00018461	608.343902702717	31.65	0.5031	31.65	31.45	31.953	0					42	17	3	0	0	0	0.01251	2	5963	5911;5963		75.571	31.589	1	951440			21050	10664	11810	11811	26746;26747	26747		947			0.07456675361959242
KYMKEKLLF	9	Oxidation (M)	_KYM(Oxidation (M))KEKLLF_		KYM(1)KEKLLF		KYM(96)KEKLLF	0	0	1		ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.8984069824219	3	405.898382	1214.67332	-0.15896	-6.4521E-05	0.25818	0.0001048	0.099222	4.0274E-05	405.8984249385969	31.633	1.4762	31.633	31.361	32.837	0					134	52	4	0	0	0	0.0037869	3	5967	5917;5967;6017		96.034	57.476	1	7551100			21051	10664	11810	11811	26748;26749;26750	26749		947			0.07456675361959242
KYMKEKLLF	9	Oxidation (M)	_KYM(Oxidation (M))KEKLLF_		KYM(1)KEKLLF		KYM(96)KEKLLF	0	0	1		ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.8982238769531	3	405.898382	1214.67332	-0.10588	-4.2977E-05	0.22331	9.0642E-05	0.11743	4.7665E-05	405.8983714729	31.613	1.3183	31.655	31.399	32.717	0.042366					140	46	4	0	0	0	0.0037869	2	5968	5916;5968		96.034	48.198	1	8681400			21052	10664	11810	11811	26751;26752	26752		947			0.07456675361959242
KYMKEKLLF	9	Oxidation (M)	_KYM(Oxidation (M))KEKLLF_		KYM(1)KEKLLF		KYM(85)KEKLLF	0	0	1		ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.3443603515625	2	608.343935	1214.67332	0.37086	0.00022561	-0.32743	-0.00019919	0.043429	2.642E-05	608.3438229754171	31.657	0.51035	31.699	31.458	31.968	0.042364					39	17	3	0	0	0	0.0066776	1	5939	5939		84.522	33.107	1	1473000			21053	10664	11810	11811	26753	26753		947			0.07456675361959242
KYMKEKLLF	9	Oxidation (M)	_KYM(Oxidation (M))KEKLLF_		KYM(1)KEKLLF		KYM(92)KEKLLF	0	0	1		ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.8983459472656	3	405.898382	1214.67332	-0.052713	-2.1396E-05	0.2156	8.7513E-05	0.16289	6.6117E-05	405.89841369601976	31.579	1.794	31.62	31.178	32.972	0.040991					171	64	5	0	0	0	0.0042709	3	5892	5892;5934;5989		92.201	50.854	1	8422200			21054	10664	11810	11811	26754;26755;26756	26754		947			0.07456675361959242
KYMKEKLLF	9	Oxidation (M)	_KYM(Oxidation (M))KEKLLF_		KYM(1)KEKLLF		KYM(94)KEKLLF	0	0	1		ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.3441162109375	2	608.343935	1214.67332	0.30135	0.00018332	-0.17682	-0.00010757	0.12453	7.5757E-05	608.3439614686598	31.584	0.53007	31.625	31.419	31.949	0.040989					42	18	3	0	0	0	0.0040516	2	5896	5896;5945		93.938	42.523	1	1044300			21055	10664	11810	11811	26757;26758	26757		947			0.07456675361959242
KYMLKANLI	9	Oxidation (M)	_KYM(Oxidation (M))LKANLI_		KYM(1)LKANLI		KYM(110)LKANLI	0	0	1		nc|ENSG00000164134|Q9BXJ9-4|NAA15;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3231201171875	2	555.323002	1108.63145	0.43981	0.00024424	0.1091	6.0587E-05	0.54891	0.00030482	555.3229551986216	40.605	1.3593	40.605	39.996	41.355	0					111	49	4	0	0	0	0.0022761	2	8652	8652;8699		108	64.139	1	2005500			21056	5798	11811	11812	26759;26760	26759		687			0.0814811967343303
KYMLKANLI	9	Oxidation (M)	_KYM(Oxidation (M))LKANLI_		KYM(1)LKANLI		KYM(68)LKANLI	0	0	1		nc|ENSG00000164134|Q9BXJ9-4|NAA15;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3230590820312	2	555.323002	1108.63145	0.50614	0.00028107	0.0368	2.0436E-05	0.54294	0.0003015	555.3229342072082	40.411	1.2216	40.504	39.887	41.109	0.09267					90	44	3	0	0	0	0.017391	2	8641	8589;8641		68.081	29.597	1	2258200			21057	5798	11811	11812	26761;26762	26762		687			0.0814811967343303
KYMLKANLI	9	Oxidation (M)	_KYM(Oxidation (M))LKANLI_		KYM(1)LKANLI		KYM(89)LKANLI	0	0	1		nc|ENSG00000164134|Q9BXJ9-4|NAA15;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3231811523438	2	555.323002	1108.63145	0.37682	0.00020926	0.0045934	2.5508E-06	0.38142	0.00021181	555.3228888573657	40.358	0.87242	40.458	40.146	41.018	0.099403					83	31	4	0	0	0	0.0046874	2	8574	8574;8621		88.904	46.809	1	2235600			21058	5798	11811	11812	26763;26764	26763		687			0.0814811967343303
KYMPNVKVAVF	11	Oxidation (M)	_KYM(Oxidation (M))PNVKVAVF_		KYM(1)PNVKVAVF		KYM(41)PNVKVAVF	0	0	1		ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;DDX39B|p.A178*|1|0.23|ENSG00000198563|chr6:31536585-31536586|-/AG|frameshift_variant;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENSG00000198563|ENST00000396172|DDX39B	ENSG00000198563|ENST00000396172|DDX39B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.9091491699219	3	437.90917	1310.70568	0.20409	8.9372E-05	-0.58766	-0.00025734	-0.38357	-0.00016797	437.9090831582556	45.061	1.364	45.061	44.581	45.945	0					181	49	5	0	0	0	0.091141	2	10025	10025;10073		41.347	31.032	1	8771200			21059	8089	11812	11813	26765;26766	26765		879			0.06275462764938311
KYMPNVKVAVF	11	Oxidation (M)	_KYM(Oxidation (M))PNVKVAVF_		KYM(1)PNVKVAVF		KYM(43)PNVKVAVF	0	0	1		ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;DDX39B|p.A178*|1|0.23|ENSG00000198563|chr6:31536585-31536586|-/AG|frameshift_variant;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENSG00000198563|ENST00000396172|DDX39B	ENSG00000198563|ENST00000396172|DDX39B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.9092712402344	3	437.90917	1310.70568	0.15933	6.9772E-05	-0.52821	-0.00023131	-0.36888	-0.00016153	437.90911042115295	44.874	1.3646	44.942	44.488	45.852	0.068569					182	48	5	0	0	0	0.085994	1	9939	9939		42.835	28.617	1	8954800			21060	8089	11812	11813	26767	26767		879			0.06275462764938311
KYMPNVKVAVF	11	Oxidation (M)	_KYM(Oxidation (M))PNVKVAVF_		KYM(1)PNVKVAVF		KYM(46)PNVKVAVF	0	0	1		ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;DDX39B|p.A178*|1|0.23|ENSG00000198563|chr6:31536585-31536586|-/AG|frameshift_variant;ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENSG00000198563|ENST00000396172|DDX39B	ENSG00000198563|ENST00000396172|DDX39B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.90887451171875	3	437.90917	1310.70568	0.21436	9.387E-05	-0.53871	-0.00023591	-0.32435	-0.00014204	437.9091023270531	44.945	1.4342	45.02	44.475	45.91	0.07505					187	52	5	0	0	0	0.073405	1	9885	9885		46.475	36.711	1	9216200			21061	8089	11812	11813	26768	26768		879			0.06275462764938311
KYMTAVVKL	9	Oxidation (M)	_KYM(Oxidation (M))TAVVKL_		KYM(1)TAVVKL		KYM(150)TAVVKL	0	0	1		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.8110961914062	2	534.809728	1067.6049	0.40601	0.00021714	-0.17586	-9.4052E-05	0.23015	0.00012308	534.8104045344336	33.051	2.6973	33.051	32.529	35.227	0					266	96	6	0	0	0	3.4202E-05	8	6376	6287;6335;6376;6419;6469;6515;6566;6616		151.48	65.838	1	30230000			21062	670	11813	11814	26769;26770;26771;26772;26773;26774;26775;26776	26771		80			0.07380430782109215
KYMTAVVKL	9	Oxidation (M)	_KYM(Oxidation (M))TAVVKL_		KYM(1)TAVVKL		KYM(160)TAVVKL	0	0	1		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.8108520507812	2	534.809728	1067.6049	0.30566	0.00016347	-0.09557	-5.1112E-05	0.21009	0.00011236	534.8104111472678	32.899	2.6839	32.955	32.478	35.162	0.055309					272	96	6	0	0	0	4.216E-07	9	6352	6258;6306;6352;6392;6436;6487;6538;6589;6644		163.69	78.045	1	30316000			21063	670	11813	11814	26777;26778;26779;26780;26781;26782;26783;26784;26785	26779		80			0.07380430782109215
KYMTAVVKL	9	Oxidation (M)	_KYM(Oxidation (M))TAVVKL_		KYM(1)TAVVKL		KYM(150)TAVVKL	0	0	1		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.810791015625	2	534.809728	1067.6049	0.40943	0.00021897	-0.14447	-7.7264E-05	0.26496	0.0001417	534.8103318435527	32.917	2.7323	32.972	32.469	35.201	0.054375					252	98	6	0	0	0	3.4202E-05	8	6355	6259;6307;6355;6398;6442;6494;6544;6593		151.48	65.838	1	31761000			21064	670	11813	11814	26786;26787;26788;26789;26790;26791;26792;26793	26788		80			0.07380430782109215
KYMTAVVKLF	10	Oxidation (M)	_KYM(Oxidation (M))TAVVKLF_		KYM(1)TAVVKLF		KYM(69)TAVVKLF	0	0	1		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.845458984375	2	608.343935	1214.67332	0.56654	0.00034465	-0.33418	-0.0002033	0.23235	0.00014135	608.3438259627926	48.497	0.62176	48.497	48.205	48.827	0					61	21	4	0	0	0	0.022722	3	11090	11090;11134;11143		68.76	23.02	1	1748100			21065	670	11814	11815	26794;26795;26796	26794		80			0.07456675361959242
KYMTAVVKLF	10	Oxidation (M)	_KYM(Oxidation (M))TAVVKLF_		KYM(1)TAVVKLF		KYM(69)TAVVKLF	0	0	1		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.34423828125	2	608.343935	1214.67332	0.76569	0.0004658	-0.25696	-0.00015632	0.50873	0.00030948	608.3438065399046	48.525	0.62304	48.573	48.258	48.881	0.047523					59	22	4	0	0	0	0.13837	1	11141	11141		68.76	30.145	1	1692100			21066	670	11814	11815	26797	26797		80			0.07456675361959242
KYMTAVVKLF	10	Oxidation (M)	_KYM(Oxidation (M))TAVVKLF_		KYM(1)TAVVKLF		KYM(67)TAVVKLF	0	0	1		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.3442993164062	2	608.343935	1214.67332	0.48776	0.00029672	-0.10435	-6.3482E-05	0.3834	0.00023324	608.3439606658711	48.419	0.62084	48.462	48.218	48.839	0.04332					65	22	4	0	0	0	0.14008	1	11105	11105		67.081	23.308	1	1624000			21067	670	11814	11815	26798	26798		80			0.07456675361959242
KYMYFTVVM	9	2 Oxidation (M)	_KYM(Oxidation (M))YFTVVM(Oxidation (M))_		KYM(1)YFTVVM(1)		KYM(110)YFTVVM(110)	0	0	2		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.2857055664062	2	607.285228	1212.5559	0.60426	0.00036696	-0.24623	-0.00014953	0.35803	0.00021743	607.2852567940704	51.243	1.2018	51.243	50.896	52.098	0					98	44	5	0	0	0	0.0019475	2	11934	11934;11984		110.67	93.562	1	4086300			21068	4224	11815	11816	26799;26800	26799		539;540			-0.041872255691487226
KYMYFTVVM	9	2 Oxidation (M)	_KYM(Oxidation (M))YFTVVM(Oxidation (M))_		KYM(1)YFTVVM(1)		KYM(110)YFTVVM(110)	0	0	2		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.28564453125	2	607.285228	1212.5559	0.51015	0.00030981	-0.13422	-8.151E-05	0.37593	0.0002283	607.2852441646977	51.239	1.2684	51.286	50.929	52.198	0.046574					93	46	5	0	0	0	0.0019475	3	11943	11910;11943;11995		110.67	87.938	1	4236300			21069	4224	11815	11816	26801;26802;26803	26802		539;540			-0.041872255691487226
KYMYFTVVM	9	2 Oxidation (M)	_KYM(Oxidation (M))YFTVVM(Oxidation (M))_		KYM(1)YFTVVM(1)		KYM(100)YFTVVM(100)	0	0	2		ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	ENSG00000139289|ENST00000266671|PHLDA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.28564453125	2	607.285228	1212.5559	0.40006	0.00024295	0.18147	0.00011021	0.58154	0.00035316	607.2853698311621	51.303	1.5375	51.313	50.913	52.451	0.0095634					134	57	5	0	0	0	0.003317	3	11971	11938;11971;12020		99.755	77.019	1	3691900			21070	4224	11815	11816	26804;26805;26806	26805		539;540			-0.041872255691487226
KYNANFVTF	9	Unmodified	_KYNANFVTF_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2800903320312	2	552.279649	1102.54475	0.46854	0.00025877	0.20672	0.00011417	0.67526	0.00037293	552.2796815864932	53.243	1.6665	53.243	52.96	54.626	0					169	61	5	0	0	0	5.0285E-07	3	12560	12511;12560;12609		160.52	112.77	1	16531000			21071	6693	11816	11817	26807;26808;26809	26808					-0.0024254355678294814
KYNANFVTF	9	Unmodified	_KYNANFVTF_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2799072265625	2	552.279649	1102.54475	0.53672	0.00029642	0.090634	5.0056E-05	0.62736	0.00034648	552.27961535849	53.204	1.5913	53.261	52.913	54.504	0.056259					159	59	4	0	0	0	4.1361E-11	4	12586	12500;12545;12586;12639		189.78	138.92	1	15693000			21072	6693	11816	11817	26810;26811;26812;26813	26812					-0.0024254355678294814
KYNANFVTF	9	Unmodified	_KYNANFVTF_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2800903320312	2	552.279649	1102.54475	0.44014	0.00024308	0.20705	0.00011435	0.64719	0.00035743	552.2796687288483	53.45	1.6848	53.44	53.117	54.802	-0.0096054					154	61	4	0	0	0	1.3869E-07	4	12626	12579;12626;12673;12729		174.73	126.98	1	16588000			21073	6693	11816	11817	26814;26815;26816;26817	26815					-0.0024254355678294814
KYNDFGNSF	9	Unmodified	_KYNDFGNSF_					0	0	0		ENSG00000166526|ENST00000299667|ZNF3;ENST00000487620.1_1_7:99668768-99673049:-|nuORF	ENSG00000166526|ENST00000299667|ZNF3	ENSG00000166526|ENST00000299667|ZNF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8307495117188	2	546.243264	1090.47197	0.56934	0.000311	-0.58991	-0.00032224	-0.020569	-1.1236E-05	546.2425941766538	42.386	0.29417	42.478	42.26	42.554	0.091362					19	9	3	0	0	0	0.2422	1	9199	9199		14.405	6.4952	1	269690			21074	6090	11817	11818	26818	26818					-0.06964297350191373
KYNDNFFGL	9	Unmodified	_KYNDNFFGL_					0	0	0		UBR7|p.N343Tfs*15|1|0.22|ENSG00000012963|chr14:93220313-93220313|A/-|frameshift_variant;ENSG00000012963|ENST00000013070|UBR7	UBR7|p.N343Tfs*15|1|0.22|ENSG00000012963|chr14:93220313-93220313|A/-|frameshift_variant	UBR7|p.N343Tfs*15|1|0.22|ENSG00000012963|chr14:93220313-93220313|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2694702148438	2	559.269281	1116.52401	0.31061	0.00017371	-0.15044	-8.4139E-05	0.16016	8.9574E-05	559.2692359487727	62.905	0.70576	62.905	62.58	63.285	0					90	25	5	0	0	0	0.0028542	5	15516	15506;15516;15560;15611;15662		103.42	75.791	1	5950200			21075	457	11818	11819	26819;26820;26821;26822;26823	26820					-0.029591339364287705
KYNDNFFGL	9	Unmodified	_KYNDNFFGL_					0	0	0		UBR7|p.N343Tfs*15|1|0.22|ENSG00000012963|chr14:93220313-93220313|A/-|frameshift_variant;ENSG00000012963|ENST00000013070|UBR7	UBR7|p.N343Tfs*15|1|0.22|ENSG00000012963|chr14:93220313-93220313|A/-|frameshift_variant	UBR7|p.N343Tfs*15|1|0.22|ENSG00000012963|chr14:93220313-93220313|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2692260742188	2	559.269281	1116.52401	0.40619	0.00022717	-0.25367	-0.00014187	0.15252	8.53E-05	559.269194021821	62.789	0.89605	62.884	62.52	63.416	0.095722					83	26	4	0	0	0	0.0041491	4	15474	15474;15524;15576;15607		93.166	71.419	1	5833900			21076	457	11818	11819	26824;26825;26826;26827	26824					-0.029591339364287705
KYNDNFFGL	9	Unmodified	_KYNDNFFGL_					0	0	0		UBR7|p.N343Tfs*15|1|0.22|ENSG00000012963|chr14:93220313-93220313|A/-|frameshift_variant;ENSG00000012963|ENST00000013070|UBR7	UBR7|p.N343Tfs*15|1|0.22|ENSG00000012963|chr14:93220313-93220313|A/-|frameshift_variant	UBR7|p.N343Tfs*15|1|0.22|ENSG00000012963|chr14:93220313-93220313|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.26953125	2	559.269281	1116.52401	0.20841	0.00011656	-0.079033	-4.4201E-05	0.12938	7.2357E-05	559.2692897739446	62.937	0.7539	62.929	62.597	63.351	-0.0085526					93	27	4	0	0	0	0.0028542	6	15507	15502;15507;15555;15596;15642;15665		103.42	75.791	1	7028200			21077	457	11818	11819	26828;26829;26830;26831;26832;26833	26829					-0.029591339364287705
KYNETFHFL	9	Unmodified	_KYNETFHFL_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.7982177734375	2	599.798206	1197.58186	0.52653	0.00031581	-0.43504	-0.00026094	0.091488	5.4874E-05	599.7979939041429	49.863	0.53173	49.884	49.694	50.226	0.020691					38	19	3	0	0	0	0.037019	1	11509	11509		57.722	28.64	1	347330			21078	8109	11819	11820	26834	26834					-0.00902872010988176
KYNETFHFL	9	Unmodified	_KYNETFHFL_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	599.798206	1197.58186	0.45713	0.00027419	-0.028091	-1.6849E-05	0.42904	0.00025734	599.7980651722577	49.925	0.46269	49.925	49.729	50.191	0	0.0033168	0.00032557	NaN	57.722	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419160			21079	8109	11819	11820							-0.00902872010988176
KYNETFHFL	9	Unmodified	_KYNETFHFL_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	599.798206	1197.58186	0.66142	0.00039672	-0.38329	-0.0002299	0.27813	0.00016682	599.7979804230133	49.911	0.52123	49.956	49.721	50.242	0.044891	0.034375	-0.00010052	NaN	57.722	37	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420710			21080	8109	11819	11820							-0.00902872010988176
KYNFPLVTL	9	Unmodified	_KYNFPLVTL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8160400390625	2	547.815867	1093.61718	0.44472	0.00024363	-0.36844	-0.00020184	0.076286	4.1791E-05	547.815944302898	69.258	0.35181	69.236	69	69.352	-0.022087					27	11	3	0	0	0	0.041175	1	17490	17490		56.177	32.156	1	318280			21081	882	11820	11821	26835	26835					0.07411790516812289
KYNFPLVTL	9	Unmodified	_KYNFPLVTL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	547.815867	1093.61718	0.34898	0.00019118	-0.11582	-6.3446E-05	0.23317	0.00012773	547.8159435422127	69.195	0.36237	69.195	68.977	69.339	0	-0.033542	0.00019913	NaN	56.177	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349530			21082	882	11820	11821							0.07411790516812289
KYNFPLVTL	9	Unmodified	_KYNFPLVTL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	547.815867	1093.61718	0.56831	0.00031133	-0.49187	-0.00026945	0.07644	4.1875E-05	547.8157794332839	69.183	0.37826	69.255	68.993	69.372	0.071945	0.026186	-0.00021288	NaN	56.177	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307580			21083	882	11820	11821							0.07411790516812289
KYNLAPSL	8	Unmodified	_KYNLAPSL_					0	0	0			REV__ENSG00000139174|ENST00000345127|PRICKLE1	REV__ENSG00000139174|ENST00000345127|PRICKLE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.7660827636719	2	453.258185	904.501818	0.0081844	3.7096E-06	0.91191	0.00041333	0.9201	0.00041704	453.2585889052456	39.103	0.52568	39.196	38.916	39.442	0.09267					30	18	2	0	0	0	0.31088	1	8220	8220		21.747	1.293	1	202410	+		21084	15970	11821	11822	26836	26836					0.04574686385797122
KYNLINEYF	9	Unmodified	_KYNLINEYF_					0	0	0		nc|ENSG00000153936|Q7LGA3-2|HS2ST1;ENSG00000153936|ENST00000370550|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.30615234375	2	602.305864	1202.59717	0.73068	0.00044009	0.6742	0.00040607	1.4049	0.00084617	602.3061560860959	64.19	1.1128	64.19	63.797	64.91	0					57	40	3	0	0	0	2.32E-07	2	15946	15903;15946		171.09	114.91	1	4503000			21085	5094	11822	11823	26837;26838	26838					0.0039799478618078865
KYNLINEYF	9	Unmodified	_KYNLINEYF_					0	0	0		nc|ENSG00000153936|Q7LGA3-2|HS2ST1;ENSG00000153936|ENST00000370550|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.30615234375	2	602.305864	1202.59717	0.6586	0.00039668	0.43713	0.00026329	1.0957	0.00065997	602.3061426381071	64.089	1.2751	64.182	63.711	64.986	0.092888					87	46	5	0	0	0	4.8913E-11	3	15897	15838;15853;15897		187.3	112.37	1	4665300			21086	5094	11822	11823	26839;26840;26841	26841					0.0039799478618078865
KYNLINEYF	9	Unmodified	_KYNLINEYF_					0	0	0		nc|ENSG00000153936|Q7LGA3-2|HS2ST1;ENSG00000153936|ENST00000370550|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3060302734375	2	602.305864	1202.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.114	1	64.104	63.604	64.604	-0.0095291								0	0	0	1.068E-10	1	15906	15906		145.13	89.627	1				21087	5094	11822	11823	26842	26842					0.0039799478618078865
KYNLINEYF	9	Unmodified	_KYNLINEYF_					0	0	0		nc|ENSG00000153936|Q7LGA3-2|HS2ST1;ENSG00000153936|ENST00000370550|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3062133789062	2	602.305864	1202.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.263	1	64.253	63.753	64.753	-0.0095291								0	0	0	1.3323E-16	1	15952	15952		173.69	94.958	1				21088	5094	11822	11823	26843	26843					0.0039799478618078865
KYNLISIKDEW	11	Unmodified	_KYNLISIKDEW_					0	0	0			REV__ENSG00000170367|ENST00000304710|CST5	REV__ENSG00000170367|ENST00000304710|CST5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2535705566406	3	470.253882	1407.73982	-0.093913	-4.4163E-05	-0.27082	-0.00012735	-0.36473	-0.00017152	470.25368603805856	14.771	0.49896	14.706	14.484	14.983	-0.064826					40	17	4	0	0	0	0.45422	1	832	832		4.1166	1.6818	1	92396	+		21089	17575	11823	11824	26844	26844					0.05225582457569544
KYNLVTHIL	9	Unmodified	_KYNLVTHIL_					0	0	0		ENSG00000178175|ENST00000318442|ZNF366;ENSG00000140548|ENST00000268154|ZNF710	ENSG00000178175|ENST00000318442|ZNF366;ENSG00000140548|ENST00000268154|ZNF710	ENSG00000178175|ENST00000318442|ZNF366	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.8270263671875	2	550.826766	1099.63898	0.80784	0.00044498	0.45255	0.00024928	1.2604	0.00069426	551.328737504491	47.817	0.34819	47.865	47.646	47.994	0.04752					17	12	2	0	0	0	0.017549	1	10872	10872		67.838	23.98	1	1333800			21090	7041;4317	11824	11825	26845	26845					0.0931459526539129
KYNLVTHIL	9	Unmodified	_KYNLVTHIL_					0	0	0		ENSG00000178175|ENST00000318442|ZNF366;ENSG00000140548|ENST00000268154|ZNF710	ENSG00000178175|ENST00000318442|ZNF366;ENSG00000140548|ENST00000268154|ZNF710	ENSG00000178175|ENST00000318442|ZNF366	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	550.826766	1099.63898	0.64801	0.00035694	0.71895	0.00039602	1.367	0.00075296	550.8270452385576	47.908	0.32514	47.908	47.634	47.959	0	0.050469	0.00017324	NaN	67.838	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1383500			21091	7041;4317	11824	11825							0.0931459526539129
KYNLVTHIL	9	Unmodified	_KYNLVTHIL_					0	0	0		ENSG00000178175|ENST00000318442|ZNF366;ENSG00000140548|ENST00000268154|ZNF710	ENSG00000178175|ENST00000318442|ZNF366;ENSG00000140548|ENST00000268154|ZNF710	ENSG00000178175|ENST00000318442|ZNF366	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	550.826766	1099.63898	0.62694	0.00034533	0.29009	0.00015979	0.91703	0.00050513	550.8266023455772	47.757	0.26498	47.8	47.637	47.902	0.04332	-0.057743	-0.00029921	NaN	67.838	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	812740			21092	7041;4317	11824	11825							0.0931459526539129
KYNVVFKYL	9	Unmodified	_KYNVVFKYL_					0	0	0		nc|ENSG00000137822|Q9UGJ1|TUBGCP4;ENSG00000137822|ENST00000564079|TUBGCP4;ENST00000563963.1_1_15:43687726-43694213:+|nuORF	nc|ENSG00000137822|Q9UGJ1|TUBGCP4	nc|ENSG00000137822|Q9UGJ1|TUBGCP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.8504638671875	2	587.336967	1172.65938	0.48526	0.00028501	-1.09	-0.00064021	-0.60475	-0.00035519	587.336077134809	53.922	0.37479	53.912	53.745	54.119	-0.0096054					22	13	2	0	0	0	0.12642	1	12790	12790		34.402	22.761	1	415750			21093	4083	11825	11826	26846	26846					0.07995765925193155
KYNVVFKYL	9	Unmodified	_KYNVVFKYL_					0	0	0		nc|ENSG00000137822|Q9UGJ1|TUBGCP4;ENSG00000137822|ENST00000564079|TUBGCP4;ENST00000563963.1_1_15:43687726-43694213:+|nuORF	nc|ENSG00000137822|Q9UGJ1|TUBGCP4	nc|ENSG00000137822|Q9UGJ1|TUBGCP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	587.336967	1172.65938	0.53643	0.00031507	-1.4327	-0.00084147	-0.89626	-0.0005264	587.3360789004474	53.592	0.47216	53.592	53.386	53.858	0	-0.097666	-0.000362	NaN	34.402	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311670			21094	4083	11825	11826							0.07995765925193155
KYNVVFKYL	9	Unmodified	_KYNVVFKYL_					0	0	0		nc|ENSG00000137822|Q9UGJ1|TUBGCP4;ENSG00000137822|ENST00000564079|TUBGCP4;ENST00000563963.1_1_15:43687726-43694213:+|nuORF	nc|ENSG00000137822|Q9UGJ1|TUBGCP4	nc|ENSG00000137822|Q9UGJ1|TUBGCP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	587.336967	1172.65938	0.18699	0.00010983	-0.91587	-0.00053792	-0.72888	-0.0004281	587.3362150954689	53.508	0.38971	53.565	53.404	53.794	0.056255	-0.12492	0.0002451	NaN	34.402	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258450			21095	4083	11825	11826							0.07995765925193155
KYPASSSVF	9	Unmodified	_KYPASSSVF_					0	0	0		ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2530212402344	2	493.2531	984.491647	0.77255	0.00038106	-0.71747	-0.00035389	0.055081	2.7169E-05	493.25255154474877	37.487	0.94312	37.487	37.063	38.007	0					62	33	3	0	0	0	0.058995	1	7722	7722		49.554	16.769	1	705830			21096	8649	11826	11827	26847	26847					-0.0012192133942789951
KYPASSSVF	9	Unmodified	_KYPASSSVF_					0	0	0		ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.2528991699219	2	493.2531	984.491647	0.44328	0.00021865	-0.12486	-6.1587E-05	0.31842	0.00015706	493.2528209686967	37.353	0.86546	37.44	37.09	37.955	0.087406					63	31	3	0	0	0	0.074552	2	7683	7683;7744		43.772	10.987	1	599200			21097	8649	11826	11827	26848;26849	26848					-0.0012192133942789951
KYPASSSVF	9	Unmodified	_KYPASSSVF_					0	0	0		ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.2530212402344	2	493.2531	984.491647	0.41907	0.00020671	-0.023426	-1.1555E-05	0.39564	0.00019515	493.25289368242227	37.347	0.69809	37.44	37.142	37.84	0.093018					54	25	3	0	0	0	0.04299	1	7678	7678		55.503	17.327	1	632850			21098	8649	11826	11827	26850	26850					-0.0012192133942789951
KYPASTVQI	9	Unmodified	_KYPASTVQI_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7822570800781	2	503.782025	1005.5495	0.37946	0.00019117	-0.33378	-0.00016815	0.045678	2.3012E-05	503.78179233474225	38.048	0.72109	38.139	37.821	38.542	0.090881					48	25	2	0	0	0	0.053988	1	7911	7911		51.415	20.779	1	506170			21099	1692	11827	11828	26851	26851					0.04694340585979262
KYPASTVQI	9	Unmodified	_KYPASTVQI_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	503.782025	1005.5495	0.32656	0.00016451	0.060715	3.0587E-05	0.38727	0.0001951	503.78196368376825	38.116	0.80157	38.116	37.795	38.597	0	-0.01647	0.00017858	NaN	51.415	58	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463840			21100	1692	11827	11828							0.04694340585979262
KYPASTVQI	9	Unmodified	_KYPASTVQI_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	503.782025	1005.5495	0.28159	0.00014186	-0.067465	-3.3988E-05	0.21412	0.00010787	503.78191982630085	38.046	0.72327	38.144	37.768	38.491	0.097527	0.010654	4.9426E-05	NaN	51.415	57	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359950			21101	1692	11827	11828							0.04694340585979262
KYPDIISRI	9	Unmodified	_KYPDIISRI_					0	0	0		nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.831787109375	2	552.824224	1103.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.873	1	48.873	48.373	49.373	0								0	0	0	0.099356	1	11218	11218		46.475	7.8605	1				21102	1986	11828	11829	26852	26852					0.08622291402753035
KYPDIISRI	9	Unmodified	_KYPDIISRI_					0	0	0		nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1	nc|ENSG00000105486|P18858-2|LIG1	nc|ENSG00000105486|P18858-2|LIG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8236083984375	2	552.824224	1103.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.001	1	49.001	48.501	49.501	0								0	0	0	0.099356	1	11256	11256		46.475	4.1627	1				21103	1986	11828	11829	26853	26853					0.08622291402753035
KYPDRVPVI	9	Unmodified	_KYPDRVPVI_					0	0	0		ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.8189697265625	2	543.818941	1085.62333	0.33849	0.00018408	-0.26724	-0.00014533	0.07125	3.8747E-05	543.8188532609265	41.287	2.9024	41.287	40.132	43.034	0					271	110	5	0	0	0	0.001957	5	8947	8803;8847;8894;8947;8993		110.55	68.713	1	12782000			21104	6441;570	11829	11830	26854;26855;26856;26857;26858	26857					0.08394308748324875
KYPDRVPVI	9	Unmodified	_KYPDRVPVI_					0	0	0		ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8199462890625	2	543.818941	1085.62333	0.59966	0.00032611	-0.29272	-0.00015919	0.30695	0.00016692	543.8189388834355	41.753	1.3501	41.843	41.738	43.088	0.090248					80	50	2	0	0	0	0.26612	1	9014	9014		13.906	3.8321	1	1806000			21105	6441;570	11829	11830	26859	26859					0.08394308748324875
KYPDRVPVI	9	Unmodified	_KYPDRVPVI_					0	0	0		ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.819091796875	2	543.818941	1085.62333	0.46044	0.0002504	-0.4552	-0.00024754	0.0052413	2.8503E-06	543.8187524161832	40.929	1.5026	41.025	40.143	41.645	0.096622					206	55	5	0	0	0	0.001957	4	8819	8717;8767;8819;8870		110.55	70.603	1	16052000			21106	6441;570	11829	11830	26860;26861;26862;26863	26862					0.08394308748324875
KYPDRVPVI	9	Unmodified	_KYPDRVPVI_					0	0	0		ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.8192749023438	2	543.818941	1085.62333	0.74415	0.00040468	-0.78135	-0.00042491	-0.037198	-2.0229E-05	543.8186336825802	41.664	1.5292	41.761	41.7	43.229	0.096622					73	56	2	0	0	0	0.15763	1	9050	9050		29.841	16.798	1	928310			21107	6441;570	11829	11830	26864	26864					0.08394308748324875
KYPDRVPVI	9	Unmodified	_KYPDRVPVI_					0	0	0		ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	543.818941	1085.62333	0.58416	0.00031768	-0.61627	-0.00033514	-0.032111	-1.7463E-05	543.8186808155025	41	1.4889	41.09	40.226	41.715	0.090248	-0.044236	-0.00019112	NaN	110.55	215	56	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16525000			21108	6441;570	11829	11830							0.08394308748324875
KYPEIKSLM	9	Oxidation (M)	_KYPEIKSLM(Oxidation (M))_		KYPEIKSLM(1)		KYPEIKSLM(98)	0	0	1		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8046264648438	2	562.804642	1123.59473	-0.2584	-0.00014543	0.35549	0.00020007	0.097089	5.4642E-05	562.8047712129644	34.532	1.992	34.532	33.259	35.251	0					139	71	2	0	0	0	0.0035713	5	6807	6706;6757;6807;6852;6910		97.741	55.901	1	1738700			21109	4544	11830	11831	26865;26866;26867;26868;26869	26867		574			0.03787823056859452
KYPEIKSLM	9	Oxidation (M)	_KYPEIKSLM(Oxidation (M))_		KYPEIKSLM(1)		KYPEIKSLM(94)	0	0	1		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8047485351562	2	562.804642	1123.59473	-0.14725	-8.2871E-05	0.14074	7.921E-05	-0.0065052	-3.6611E-06	562.804656032881	34.45	1.9911	34.525	33.191	35.182	0.075306					135	71	2	0	0	0	0.0040516	6	6782	6640;6690;6739;6782;6824;6874		93.938	53.962	1	1648800			21110	4544	11830	11831	26870;26871;26872;26873;26874;26875	26873		574			0.03787823056859452
KYPEIKSLM	9	Oxidation (M)	_KYPEIKSLM(Oxidation (M))_		KYPEIKSLM(1)		KYPEIKSLM(85)	0	0	1		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8046264648438	2	562.804642	1123.59473	-0.088316	-4.9704E-05	0.075945	4.2742E-05	-0.012371	-6.9623E-06	562.8046197251698	34.262	1.8592	34.329	33.271	35.13	0.066704					131	66	2	0	0	0	0.0066776	6	6677	6627;6677;6728;6779;6829;6880		84.522	50.12	1	1751800			21111	4544	11830	11831	26876;26877;26878;26879;26880;26881	26877		574			0.03787823056859452
KYPELFANL	9	Unmodified	_KYPELFANL_					0	0	0		ENST00000496420.5_1_7:92123531-92130970:-|nuORF;nc|ENSG00000127980|O43933-2|PEX1;ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1	ENST00000496420.5_1_7:92123531-92130970:-|nuORF	ENST00000496420.5_1_7:92123531-92130970:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8178100585938	2	547.797675	1093.5808	0.50424	0.00027622	-2.7892	-0.0015279	-2.285	-0.0012517	547.7977345738909	64.723	1.5672	64.713	64.128	65.696	-0.0095291					134	57	3	0	0	0	0.14646	1	16199	16199		36.506	2.1045	1	388810			21112	3343	11831	11832	26882	26882					0.03774913620077314
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.814453125	2	585.813325	1169.6121	0.4155	0.0002434	-0.011571	-6.7787E-06	0.40392	0.00023662	585.8141934011738	74.138	9.9733	74.138	73.281	83.254	0					1109	381	6	0	0	0	4.3881E-05	40	18976	18834;18884;18930;18976;19025;19070;19121;19171;19212;19258;19299;19347;19392;19433;19480;19520;19563;19608;19653;19701;19744;19794;19840;19888;19941;19991;20039;20090;20142;20188;20235;20289;20337;20392;20440;20482;20522;20544;20617;20803		149.91	84.456	1	146140000			21113	6643;7608;8358	11832	11833	26883;26884;26885;26886;26887;26888;26889;26890;26891;26892;26893;26894;26895;26896;26897;26898;26899;26900;26901;26902;26903;26904;26905;26906;26907;26908;26909;26910;26911;26912;26913;26914;26915;26916;26917;26918;26919;26920;26921;26922	26886					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8346557617188	2	585.813325	1169.6121	0.6037	0.00035365	0.24314	0.00014243	0.84684	0.00049609	585.8132983794044	83.904	0.85394	83.904	83.228	84.082	0					86	33	3	0	0	0	0.25112	1	21929	21929		16.149	1.3108	1	381160			21114	6643;7608;8358	11832	11833	26923	26923					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.81396484375	2	585.813325	1169.6121	0.53767	0.00031498	0.2054	0.00012033	0.74308	0.0004353	585.8134573314393	84.306	3.7526	84.306	84.012	87.765	0					259	150	2	0	0	0	0.04299	8	22765	22048;22135;22142;22670;22716;22765;22817;22870		55.503	32.354	1	394580			21115	6643;7608;8358	11832	11833	26924;26925;26926;26927;26928;26929;26930;26931	26929					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813232421875	2	585.813325	1169.6121	0.44097	0.00025833	-0.0777	-4.5517E-05	0.36327	0.00021281	585.8133499474704	88.733	2.0821	88.733	87.765	89.847	0					162	112	2	0	0	0	0.086462	5	23484	23222;23484;23640;23750;23767		40.239	23.126	1	278400			21116	6643;7608;8358	11832	11833	26932;26933;26934;26935;26936	26933					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813720703125	2	585.813325	1169.6121	0.32072	0.00018788	-0.44689	-0.00026179	-0.12616	-7.3909E-05	585.8131292713177	91.463	0.71907	91.463	91.239	91.958	0					129	51	3	0	0	0	0.11201	3	24371	24331;24371;24416		36.506	13.77	1	244310			21117	6643;7608;8358	11832	11833	26937;26938;26939	26938					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813720703125	2	585.813325	1169.6121	0.068439	4.0093E-05	-0.087687	-5.1368E-05	-0.019248	-1.1276E-05	585.8133491192302	96.472	1.2459	96.472	95.79	97.036	0					221	119	3	0	0	0	0.17555	11	25797	25586;25626;25685;25708;25747;25784;25797;25822;25859;25902;25940		27.223	11.018	1	175860			21118	6643;7608;8358	11832	11833	26940;26941;26942;26943;26944;26945;26946;26947;26948;26949;26950	26946					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8125	2	585.813325	1169.6121	0.0082579	4.8376E-06	-0.22237	-0.00013027	-0.21411	-0.00012543	585.8135093682071	97.42	1.1031	97.42	97.036	98.139	0					163	116	2	0	0	0	0.13296	11	26130	25982;26011;26021;26051;26061;26087;26098;26130;26132;26153;26168		33.445	15.002	1	202680			21119	6643;7608;8358	11832	11833	26951;26952;26953;26954;26955;26956;26957;26958;26959;26960;26961	26958					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135986328125	2	585.813325	1169.6121	-0.069037	-4.0443E-05	0.028388	1.663E-05	-0.040649	-2.3813E-05	585.813519190678	102.09	0.49976	102.09	101.92	102.42	0					124	72	3	0	0	0	0.13296	8	27203	27171;27179;27195;27203;27222;27227;27245;27249		33.445	16.332	1	165780			21120	6643;7608;8358	11832	11833	26962;26963;26964;26965;26966;26967;26968;26969	26965					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.009	1	87.009	86.509	87.509	0								0	0	0	0.18053	1	22925	22925		27.629	8.3718	1				21121	6643;7608;8358	11832	11833	26970	26970					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.24	1	87.24	86.74	87.74	0								0	0	0	0.19606	1	22995	22995		23.79	9.8837	1				21122	6643;7608;8358	11832	11833	26971	26971					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.266	1	87.266	86.766	87.766	0								0	0	0	0.20303	1	23003	23003		21.537	4.4241	1				21123	6643;7608;8358	11832	11833	26972	26972					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.442	1	87.442	86.942	87.942	0								0	0	0	0.19189	1	23057	23057		24.991	10.153	1				21124	6643;7608;8358	11832	11833	26973	26973					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134155273438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.589	1	87.589	87.089	88.089	0								0	0	0	0.20303	1	23102	23102		21.537	2.28	1				21125	6643;7608;8358	11832	11833	26974	26974					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.657	1	87.657	87.157	88.157	0								0	0	0	0.20977	1	23123	23123		19.362	5.4559	1				21126	6643;7608;8358	11832	11833	26975	26975					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.816	1	87.816	87.316	88.316	0								0	0	0	0.1351	1	23172	23172		38.176	5.3899	1				21127	6643;7608;8358	11832	11833	26976	26976					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8131713867188	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.055	1	88.055	87.555	88.555	0								0	0	0	0.1768	1	23244	23244		28.495	3.0952	1				21128	6643;7608;8358	11832	11833	26977	26977					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134155273438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.289	1	88.289	87.789	88.789	0								0	0	0	0.19956	1	23316	23316		22.658	5.5452	1				21129	6643;7608;8358	11832	11833	26978	26978					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8133544921875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.318	1	88.318	87.818	88.818	0								0	0	0	0.1351	1	23325	23325		38.176	7.9508	1				21130	6643;7608;8358	11832	11833	26979	26979					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813232421875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.454	1	88.454	87.954	88.954	0								0	0	0	0.16485	1	23367	23367		31.268	10.854	1				21131	6643;7608;8358	11832	11833	26980	26980					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134155273438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.498	1	88.498	87.998	88.998	0								0	0	0	0.19606	1	23381	23381		23.79	6.8475	1				21132	6643;7608;8358	11832	11833	26981	26981					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.61	1	88.61	88.11	89.11	0								0	0	0	0.1351	1	23415	23415		38.176	11.907	1				21133	6643;7608;8358	11832	11833	26982	26982					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8138427734375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.902	1	89.902	89.402	90.402	0								0	0	0	0.19956	1	23809	23809		22.658	7.8198	1				21134	6643;7608;8358	11832	11833	26983	26983					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.993	1	89.993	89.493	90.493	0								0	0	0	0.19189	1	23837	23837		24.991	10.153	1				21135	6643;7608;8358	11832	11833	26984	26984					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.12	1	90.12	89.62	90.62	0								0	0	0	0.19189	1	23877	23877		24.991	5.734	1				21136	6643;7608;8358	11832	11833	26985	26985					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8132934570312	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.254	1	90.254	89.754	90.754	0								0	0	0	0.19189	1	23917	23917		24.991	10.153	1				21137	6643;7608;8358	11832	11833	26986	26986					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813720703125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.725	1	90.725	90.225	91.225	0								0	0	0	0.171	1	24061	24061		29.841	12.898	1				21138	6643;7608;8358	11832	11833	26987	26987					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134155273438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.189	1	92.189	91.689	92.689	0								0	0	0	0.16485	1	24510	24510		31.268	9.5217	1				21139	6643;7608;8358	11832	11833	26988	26988					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.323	1	92.323	91.823	92.823	0								0	0	0	0.16485	1	24550	24550		31.268	10.854	1				21140	6643;7608;8358	11832	11833	26989	26989					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.475	1	92.475	91.975	92.975	0								0	0	0	0.171	1	24595	24595		29.841	12.728	1				21141	6643;7608;8358	11832	11833	26990	26990					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.752	1	92.752	92.252	93.252	0								0	0	0	0.14229	1	24681	24681		36.506	12.486	1				21142	6643;7608;8358	11832	11833	26991	26991					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.007	1	93.007	92.507	93.507	0								0	0	0	0.19189	1	24759	24759		24.991	3.2443	1				21143	6643;7608;8358	11832	11833	26992	26992					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8133544921875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.134	1	93.134	92.634	93.634	0								0	0	0	0.16485	1	24797	24797		31.268	10.854	1				21144	6643;7608;8358	11832	11833	26993	26993					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.271	1	93.271	92.771	93.771	0								0	0	0	0.15832	1	24837	24837		32.786	12.332	1				21145	6643;7608;8358	11832	11833	26994	26994					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134155273438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.444	1	94.444	93.944	94.944	0								0	0	0	0.20977	1	25188	25188		19.362	3.5148	1				21146	6643;7608;8358	11832	11833	26995	26995					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134155273438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.706	1	94.706	94.206	95.206	0								0	0	0	0.16485	1	25266	25266		31.268	10.854	1				21147	6643;7608;8358	11832	11833	26996	26996					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8132934570312	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.292	1	95.292	94.792	95.792	0								0	0	0	0.21571	1	25437	25437		17.443	0.32975	1				21148	6643;7608;8358	11832	11833	26997	26997					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.649	1	95.649	95.149	96.149	0								0	0	0	0.18053	1	25536	25536		27.629	12.791	1				21149	6643;7608;8358	11832	11833	26998	26998					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8133544921875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.682	1	95.682	95.182	96.182	0								0	0	0	0.22511	1	25545	25545		14.405	2.7651	1				21150	6643;7608;8358	11832	11833	26999	26999					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813232421875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.559	1	98.559	98.059	99.059	0								0	0	0	0.19606	1	26373	26373		23.79	5.6434	1				21151	6643;7608;8358	11832	11833	27000	27000					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.701	1	98.701	98.201	99.201	0								0	0	0	0.19189	1	26414	26414		24.991	3.454	1				21152	6643;7608;8358	11832	11833	27001	27001					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.81396484375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.82	1	98.82	98.32	99.32	0								0	0	0	0.111	1	26447	26447		43.772	13.548	1				21153	6643;7608;8358	11832	11833	27002	27002					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8133544921875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.948	1	98.948	98.448	99.448	0								0	0	0	0.16485	1	26479	26479		31.268	10.854	1				21154	6643;7608;8358	11832	11833	27003	27003					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8129272460938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.024	1	99.024	98.524	99.524	0								0	0	0	0.20303	1	26500	26500		21.537	1.1224	1				21155	6643;7608;8358	11832	11833	27004	27004					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.089	1	99.089	98.589	99.589	0								0	0	0	0.20977	1	26517	26517		19.362	4.5237	1				21156	6643;7608;8358	11832	11833	27005	27005					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813720703125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.231	1	99.231	98.731	99.731	0								0	0	0	0.171	1	26553	26553		29.841	10.584	1				21157	6643;7608;8358	11832	11833	27006	27006					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8136596679688	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.36	1	99.36	98.86	99.86	0								0	0	0	0.19189	1	26582	26582		24.991	7.8781	1				21158	6643;7608;8358	11832	11833	27007	27007					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813232421875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.398	1	99.398	98.898	99.898	0								0	0	0	0.20303	1	26592	26592		21.537	1.0834	1				21159	6643;7608;8358	11832	11833	27008	27008					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.486	1	99.486	98.986	99.986	0								0	0	0	0.20977	1	26612	26612		19.362	2.249	1				21160	6643;7608;8358	11832	11833	27009	27009					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8131713867188	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.529	1	99.529	99.029	100.03	0								0	0	0	0.22511	1	26624	26624		14.405	4.3315	1				21161	6643;7608;8358	11832	11833	27010	27010					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.615	1	99.615	99.115	100.11	0								0	0	0	0.20303	1	26644	26644		21.537	4.5947	1				21162	6643;7608;8358	11832	11833	27011	27011					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134155273438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.803	1	99.803	99.303	100.3	0								0	0	0	0.23413	1	26689	26689		11.495	1.4208	1				21163	6643;7608;8358	11832	11833	27012	27012					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8131103515625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.989	1	99.989	99.489	100.49	0								0	0	0	0.20651	1	26733	26733		20.415	5.5763	1				21164	6643;7608;8358	11832	11833	27013	27013					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.09	1	100.09	99.592	100.59	0								0	0	0	0.20303	1	26756	26756		21.537	4.5947	1				21165	6643;7608;8358	11832	11833	27014	27014					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8142700195312	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.15	1	100.15	99.651	100.65	0								0	0	0	0.19189	1	26771	26771		24.991	7.8781	1				21166	6643;7608;8358	11832	11833	27015	27015					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.23	1	100.23	99.73	100.73	0								0	0	0	0.18639	1	26791	26791		26.268	0.86883	1				21167	6643;7608;8358	11832	11833	27016	27016					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.27	1	100.27	99.773	100.77	0								0	0	0	0.18053	1	26801	26801		27.629	8.3718	1				21168	6643;7608;8358	11832	11833	27017	27017					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813720703125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.39	1	100.39	99.893	100.89	0								0	0	0	0.16485	1	26826	26826		31.268	14.155	1				21169	6643;7608;8358	11832	11833	27018	27018					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.41	1	100.41	99.907	100.91	0								0	0	0	0.19189	1	26829	26829		24.991	9.7425	1				21170	6643;7608;8358	11832	11833	27019	27019					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.52	1	100.52	100.02	101.02	0								0	0	0	0.22511	1	26855	26855		14.405	4.3315	1				21171	6643;7608;8358	11832	11833	27020	27020					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.53	1	100.53	100.03	101.03	0								0	0	0	0.16485	1	26859	26859		31.268	5.869	1				21172	6643;7608;8358	11832	11833	27021	27021					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813232421875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.64	1	100.64	100.14	101.14	0								0	0	0	0.19956	1	26880	26880		22.658	3.4011	1				21173	6643;7608;8358	11832	11833	27022	27022					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8140258789062	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.75	1	100.75	100.25	101.25	0								0	0	0	0.19189	1	26904	26904		24.991	7.8781	1				21174	6643;7608;8358	11832	11833	27023	27023					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8131103515625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.89	1	100.89	100.39	101.39	0								0	0	0	0.14229	1	26929	26929		36.506	16.053	1				21175	6643;7608;8358	11832	11833	27024	27024					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101	1	101	100.5	101.5	0								0	0	0	0.16485	1	26949	26949		31.268	10.854	1				21176	6643;7608;8358	11832	11833	27025	27025					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.01	1	101.01	100.51	101.51	0								0	0	0	0.16485	1	26951	26951		31.268	10.854	1				21177	6643;7608;8358	11832	11833	27026	27026					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.13	1	101.13	100.63	101.63	0								0	0	0	0.16485	1	26975	26975		31.268	14.155	1				21178	6643;7608;8358	11832	11833	27027	27027					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.81298828125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.17	1	101.17	100.67	101.67	0								0	0	0	0.19189	1	26983	26983		24.991	5.734	1				21179	6643;7608;8358	11832	11833	27028	27028					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.25	1	101.25	100.75	101.75	0								0	0	0	0.19606	1	27000	27000		23.79	4.5328	1				21180	6643;7608;8358	11832	11833	27029	27029					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.3	1	101.3	100.8	101.8	0								0	0	0	0.19189	1	27010	27010		24.991	5.734	1				21181	6643;7608;8358	11832	11833	27030	27030					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8136596679688	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.38	1	101.38	100.88	101.88	0								0	0	0	0.19189	1	27029	27029		24.991	4.5373	1				21182	6643;7608;8358	11832	11833	27031	27031					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813720703125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.51	1	101.51	101.01	102.01	0								0	0	0	0.23413	1	27062	27062		11.495	1.4208	1				21183	6643;7608;8358	11832	11833	27032	27032					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.57	1	101.57	101.07	102.07	0								0	0	0	0.15548	1	27077	27077		33.445	13.03	1				21184	6643;7608;8358	11832	11833	27033	27033					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.64	1	101.64	101.14	102.14	0								0	0	0	0.21971	1	27097	27097		16.149	3.9084	1				21185	6643;7608;8358	11832	11833	27034	27034					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134155273438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.76	1	101.76	101.26	102.26	0								0	0	0	0.20977	1	27125	27125		19.362	0.10495	1				21186	6643;7608;8358	11832	11833	27035	27035					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8133544921875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.89	1	101.89	101.39	102.39	0								0	0	0	0.23413	1	27154	27154		11.495	1.4208	1				21187	6643;7608;8358	11832	11833	27036	27036					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8124389648438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.51	1	102.51	102.01	103.01	0								0	0	0	0.16485	1	27273	27273		31.268	5.869	1				21188	6643;7608;8358	11832	11833	27037	27037					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8128051757812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.65	1	102.65	102.15	103.15	0								0	0	0	0.16485	1	27299	27299		31.268	14.155	1				21189	6643;7608;8358	11832	11833	27038	27038					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8130493164062	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.7	1	102.7	102.2	103.2	0								0	0	0	0.22511	1	27308	27308		14.405	2.1647	1				21190	6643;7608;8358	11832	11833	27039	27039					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.9	1	102.9	102.4	103.4	0								0	0	0	0.19189	1	27349	27349		24.991	5.734	1				21191	6643;7608;8358	11832	11833	27040	27040					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8138427734375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.91	1	102.91	102.41	103.41	0								0	0	0	0.21971	1	27352	27352		16.149	4.5088	1				21192	6643;7608;8358	11832	11833	27041	27041					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8141479492188	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.62	1	110.62	110.12	111.12	0								0	0	0	0.171	1	28836	28836		29.841	9.387	1				21193	6643;7608;8358	11832	11833	27042	27042					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8142700195312	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.79	1	110.79	110.29	111.29	0								0	0	0	0.19606	1	28866	28866		23.79	9.8837	1				21194	6643;7608;8358	11832	11833	27043	27043					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.46	1	111.46	110.96	111.96	0								0	0	0	0.21971	1	28988	28988		16.149	2.2431	1				21195	6643;7608;8358	11832	11833	27044	27044					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8138427734375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.68	1	111.68	111.18	112.18	0								0	0	0	0.1768	1	29041	29041		28.495	11.382	1				21196	6643;7608;8358	11832	11833	27045	27045					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.814453125	2	585.813325	1169.6121	0.21417	0.00012546	0.20147	0.00011803	0.41565	0.00024349	585.8143413673198	74.027	2.9622	74.079	73.226	76.188	0.052361					518	106	6	0	0	0	4.3881E-05	19	18859	18819;18859;18879;18906;18949;18995;19039;19093;19137;19187;19236;19277;19319;19367;19408;19450;19491;19540;19585		149.91	89.84	1	178400000			21197	6643;7608;8358	11832	11833	27046;27047;27048;27049;27050;27051;27052;27053;27054;27055;27056;27057;27058;27059;27060;27061;27062;27063;27064	27047					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8131103515625	2	585.813325	1169.6121	0.37914	0.00022211	0.22046	0.00012915	0.5996	0.00035125	585.8134617149205	84.81	5.2104	84.891	83.902	89.112	0.080887					422	222	2	0	0	0	0.04299	22	23390	22100;22136;22219;22227;22589;22647;22695;22754;22806;22853;22918;22937;22990;23092;23137;23145;23186;23243;23317;23335;23340;23390		55.503	32.766	1	356670			21198	6643;7608;8358	11832	11833	27065;27066;27067;27068;27069;27070;27071;27072;27073;27074;27075;27076;27077;27078;27079;27080;27081;27082;27083;27084;27085;27086	27086					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8138427734375	2	585.813325	1169.6121	0.31801	0.00018629	-0.043038	-2.5212E-05	0.27497	0.00016108	585.8133332852101	89.776	1.8609	89.867	89.122	90.983	0.090569					238	136	3	0	0	0	0.074552	12	23607	23551;23607;23653;23723;23769;23783;23807;23850;23893;23937;23976;24016		43.772	23.126	1	345190			21199	6643;7608;8358	11832	11833	27087;27088;27089;27090;27091;27092;27093;27094;27095;27096;27097;27098	27088					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134155273438	2	585.813325	1169.6121	0.1814	0.00010626	-0.26713	-0.00015649	-0.085736	-5.0225E-05	585.8133010905678	94.425	0.98244	94.508	94.107	95.089	0.082779					147	80	3	0	0	0	0.088443	2	25230	25189;25230		39.95	19.393	1	300110			21200	6643;7608;8358	11832	11833	27099;27100	27100					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8133544921875	2	585.813325	1169.6121	0.13931	8.1608E-05	-0.34319	-0.00020105	-0.20388	-0.00011944	585.8132885301155	95.635	1.6517	95.712	95.059	96.71	0.077408					229	154	2	0	0	0	0.12279	11	25723	25407;25446;25485;25525;25564;25603;25649;25687;25723;25757;25795		34.932	19.539	1	271480			21201	6643;7608;8358	11832	11833	27101;27102;27103;27104;27105;27106;27107;27108;27109;27110;27111	27109					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.813232421875	2	585.813325	1169.6121	0.1083	6.3443E-05	-0.24215	-0.00014185	-0.13385	-7.841E-05	585.8134346604741	97.089	0.8768	97.16	96.65	97.527	0.070465					130	83	2	0	0	0	0.086462	9	25993	25831;25872;25913;25917;25953;25993;25998;26028;26067		40.239	23.126	1	292230			21202	6643;7608;8358	11832	11833	27112;27113;27114;27115;27116;27117;27118;27119;27120	27117					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8133544921875	2	585.813325	1169.6121	0.044642	2.6152E-05	-0.20095	-0.00011772	-0.15631	-9.1566E-05	585.8135217865049	99.713	0.53414	99.756	99.336	99.87	0.043251					108	70	2	0	0	0	0.21447	1	26611	26611		21.537	4.5947	1	244110			21203	6643;7608;8358	11832	11833	27121	27121					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.508	1	91.598	91.098	92.098	0.090668								0	0	0	0.19956	1	24292	24292		22.658	8.752	1				21204	6643;7608;8358	11832	11833	27122	27122					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8124389648438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.64	1	91.731	91.231	92.231	0.090668								0	0	0	0.19189	1	24334	24334		24.991	7.8781	1				21205	6643;7608;8358	11832	11833	27123	27123					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.706	1	91.797	91.297	92.297	0.090668								0	0	0	0.12621	1	24354	24354		40.239	18.702	1				21206	6643;7608;8358	11832	11833	27124	27124					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134155273438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.877	1	91.967	91.467	92.467	0.090668								0	0	0	0.14229	1	24407	24407		36.506	17.249	1				21207	6643;7608;8358	11832	11833	27125	27125					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8131103515625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.015	1	92.106	91.606	92.606	0.090668								0	0	0	0.16485	1	24450	24450		31.268	10.854	1				21208	6643;7608;8358	11832	11833	27126	27126					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8133544921875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.164	1	92.253	91.753	92.753	0.089195								0	0	0	0.15548	1	24496	24496		33.445	14.188	1				21209	6643;7608;8358	11832	11833	27127	27127					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.81396484375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.305	1	92.394	91.894	92.894	0.089195								0	0	0	0.14229	1	24539	24539		36.506	16.092	1				21210	6643;7608;8358	11832	11833	27128	27128					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.436	1	92.525	92.025	93.025	0.089195								0	0	0	0.1768	1	24580	24580		28.495	9.2375	1				21211	6643;7608;8358	11832	11833	27129	27129					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.572	1	92.661	92.161	93.161	0.089195								0	0	0	0.19606	1	24622	24622		23.79	7.9426	1				21212	6643;7608;8358	11832	11833	27130	27130					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.7	1	92.789	92.289	93.289	0.089195								0	0	0	0.14229	1	24662	24662		36.506	14.76	1				21213	6643;7608;8358	11832	11833	27131	27131					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8133544921875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.837	1	92.926	92.426	93.426	0.089195								0	0	0	0.16485	1	24705	24705		31.268	9.5217	1				21214	6643;7608;8358	11832	11833	27132	27132					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.813232421875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.975	1	93.064	92.564	93.564	0.089195								0	0	0	0.1768	1	24746	24746		28.495	9.2375	1				21215	6643;7608;8358	11832	11833	27133	27133					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8132934570312	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.111	1	93.2	92.7	93.7	0.089195								0	0	0	0.1768	1	24784	24784		28.495	9.2375	1				21216	6643;7608;8358	11832	11833	27134	27134					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.247	1	93.334	92.834	93.834	0.08667								0	0	0	0.15548	1	24825	24825		33.445	14.188	1				21217	6643;7608;8358	11832	11833	27135	27135					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.39	1	93.477	92.977	93.977	0.08667								0	0	0	0.14229	1	24870	24870		36.506	16.092	1				21218	6643;7608;8358	11832	11833	27136	27136					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.54	1	97.601	97.101	98.101	0.061516								0	0	0	0.20303	1	26101	26101		21.537	4.4241	1				21219	6643;7608;8358	11832	11833	27137	27137					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.664	1	97.726	97.226	98.226	0.061516								0	0	0	0.1351	1	26136	26136		38.176	5.8701	1				21220	6643;7608;8358	11832	11833	27138	27138					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.682	1	98.733	98.233	99.233	0.050888								0	0	0	0.19606	1	26415	26415		23.79	5.6434	1				21221	6643;7608;8358	11832	11833	27139	27139					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8136596679688	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.844	1	98.895	98.395	99.395	0.050888								0	0	0	0.16485	1	26460	26460		31.268	10.854	1				21222	6643;7608;8358	11832	11833	27140	27140					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.965	1	99.016	98.516	99.516	0.050888								0	0	0	0.18639	1	26489	26489		26.268	5.8536	1				21223	6643;7608;8358	11832	11833	27141	27141					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134155273438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.059	1	99.11	98.61	99.61	0.050888								0	0	0	0.21971	1	26512	26512		16.149	1.3108	1				21224	6643;7608;8358	11832	11833	27142	27142					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.101	1	99.152	98.652	99.652	0.050888								0	0	0	0.19189	1	26523	26523		24.991	9.7425	1				21225	6643;7608;8358	11832	11833	27143	27143					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.233	1	99.284	98.784	99.784	0.050888								0	0	0	0.20303	1	26554	26554		21.537	6.6987	1				21226	6643;7608;8358	11832	11833	27144	27144					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.356	1	99.407	98.907	99.907	0.050888								0	0	0	0.18639	1	26583	26583		26.268	9.1552	1				21227	6643;7608;8358	11832	11833	27145	27145					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.901	1	99.94	99.44	100.44	0.038994								0	0	0	0.21971	1	26710	26710		16.149	1.3108	1				21228	6643;7608;8358	11832	11833	27146	27146					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.917	1	99.956	99.456	100.46	0.038994								0	0	0	0.14907	1	26714	26714		34.932	2.6266	1				21229	6643;7608;8358	11832	11833	27147	27147					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8141479492188	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.04	1	100.08	99.581	100.58	0.038994								0	0	0	0.19189	1	26745	26745		24.991	4.5373	1				21230	6643;7608;8358	11832	11833	27148	27148					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8138427734375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.14	1	100.18	99.681	100.68	0.038994								0	0	0	0.14229	1	26769	26769		36.506	11.107	1				21231	6643;7608;8358	11832	11833	27149	27149					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134155273438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.28	1	100.32	99.818	100.82	0.038994								0	0	0	0.16485	1	26800	26800		31.268	8.5321	1				21232	6643;7608;8358	11832	11833	27150	27150					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.3	1	100.34	99.843	100.84	0.038994								0	0	0	0.20977	1	26805	26805		19.362	4.5237	1				21233	6643;7608;8358	11832	11833	27151	27151					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.43	1	100.47	99.972	100.97	0.038994								0	0	0	0.20303	1	26837	26837		21.537	1.0834	1				21234	6643;7608;8358	11832	11833	27152	27152					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.813720703125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.48	1	100.52	100.02	101.02	0.038994								0	0	0	0.111	1	26848	26848		43.772	11.467	1				21235	6643;7608;8358	11832	11833	27153	27153					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.56	1	100.6	100.1	101.1	0.038994								0	0	0	0.20977	1	26864	26864		19.362	2.249	1				21236	6643;7608;8358	11832	11833	27154	27154					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8132934570312	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.69	1	100.72	100.22	101.22	0.038994								0	0	0	0.171	1	26889	26889		29.841	8.0939	1				21237	6643;7608;8358	11832	11833	27155	27155					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8133544921875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.81	1	100.83	100.33	101.33	0.027206								0	0	0	0.15832	1	26913	26913		32.786	7.3864	1				21238	6643;7608;8358	11832	11833	27156	27156					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.82	1	100.85	100.35	101.35	0.027206								0	0	0	0.20303	1	26918	26918		21.537	4.4241	1				21239	6643;7608;8358	11832	11833	27157	27157					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134155273438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.95	1	100.97	100.47	101.47	0.027206								0	0	0	0.14229	1	26942	26942		36.506	11.107	1				21240	6643;7608;8358	11832	11833	27158	27158					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.96	1	100.99	100.49	101.49	0.027206								0	0	0	0.171	1	26946	26946		29.841	9.387	1				21241	6643;7608;8358	11832	11833	27159	27159					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8130493164062	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.15	1	101.18	100.68	101.68	0.027206								0	0	0	0.171	1	26984	26984		29.841	9.387	1				21242	6643;7608;8358	11832	11833	27160	27160					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.2	1	101.23	100.73	101.73	0.027206								0	0	0	0.22511	1	26995	26995		14.405	0.49933	1				21243	6643;7608;8358	11832	11833	27161	27161					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8131103515625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.29	1	101.32	100.82	101.82	0.027206								0	0	0	0.16485	1	27019	27019		31.268	10.854	1				21244	6643;7608;8358	11832	11833	27162	27162					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8136596679688	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.34	1	101.37	100.87	101.87	0.027206								0	0	0	0.171	1	27032	27032		29.841	10.584	1				21245	6643;7608;8358	11832	11833	27163	27163					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.41	1	101.44	100.94	101.94	0.027206								0	0	0	0.171	1	27049	27049		29.841	9.387	1				21246	6643;7608;8358	11832	11833	27164	27164					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8133544921875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.47	1	101.49	100.99	101.99	0.027206								0	0	0	0.20303	1	27064	27064		21.537	2.28	1				21247	6643;7608;8358	11832	11833	27165	27165					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.81298828125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.55	1	101.58	101.08	102.08	0.027206								0	0	0	0.171	1	27083	27083		29.841	8.0939	1				21248	6643;7608;8358	11832	11833	27166	27166					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.6	1	101.62	101.12	102.12	0.027206								0	0	0	0.14907	1	27096	27096		34.932	9.5328	1				21249	6643;7608;8358	11832	11833	27167	27167					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.62	1	101.65	101.15	102.15	0.027206								0	0	0	0.16485	1	27103	27103		31.268	10.854	1				21250	6643;7608;8358	11832	11833	27168	27168					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.81396484375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.72	1	101.74	101.24	102.24	0.027206								0	0	0	0.19189	1	27122	27122		24.991	5.734	1				21251	6643;7608;8358	11832	11833	27169	27169					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.75	1	101.77	101.27	102.27	0.027206								0	0	0	0.23413	1	27130	27130		11.495	1.4208	1				21252	6643;7608;8358	11832	11833	27170	27170					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.812744140625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.84	1	101.86	101.36	102.36	0.027206								0	0	0	0.14229	1	27148	27148		36.506	11.107	1				21253	6643;7608;8358	11832	11833	27171	27171					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8136596679688	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.9	1	101.91	101.41	102.41	0.016685								0	0	0	0.19189	1	27159	27159		24.991	6.8446	1				21254	6643;7608;8358	11832	11833	27172	27172					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8132934570312	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.92	1	101.94	101.44	102.44	0.016685								0	0	0	0.20303	1	27165	27165		21.537	1.0834	1				21255	6643;7608;8358	11832	11833	27173	27173					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.03	1	102.04	101.54	102.54	0.016685								0	0	0	0.22511	1	27187	27187		14.405	2.1647	1				21256	6643;7608;8358	11832	11833	27174	27174					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.08	1	102.1	101.6	102.6	0.016685								0	0	0	0.1768	1	27197	27197		28.495	8.0409	1				21257	6643;7608;8358	11832	11833	27175	27175					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8131713867188	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.26	1	102.28	101.78	102.78	0.016685								0	0	0	0.20303	1	27229	27229		21.537	4.5947	1				21258	6643;7608;8358	11832	11833	27176	27176					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8132934570312	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.27	1	102.29	101.79	102.79	0.016685								0	0	0	0.15548	1	27231	27231		33.445	14.188	1				21259	6643;7608;8358	11832	11833	27177	27177					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.28	1	102.29	101.79	102.79	0.016685								0	0	0	0.1768	1	27233	27233		28.495	8.08	1				21260	6643;7608;8358	11832	11833	27178	27178					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.34	1	102.35	101.85	102.85	0.016685								0	0	0	0.111	1	27244	27244		43.772	17.504	1				21261	6643;7608;8358	11832	11833	27179	27179					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8125610351562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.45	1	102.47	101.97	102.97	0.016685								0	0	0	0.19189	1	27264	27264		24.991	5.734	1				21262	6643;7608;8358	11832	11833	27180	27180					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.812744140625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.54	1	102.56	102.06	103.06	0.016685								0	0	0	0.171	1	27280	27280		29.841	10.584	1				21263	6643;7608;8358	11832	11833	27181	27181					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8128662109375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.59	1	102.6	102.1	103.1	0.016685								0	0	0	0.19189	1	27290	27290		24.991	9.7425	1				21264	6643;7608;8358	11832	11833	27182	27182					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8136596679688	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.76	1	102.78	102.28	103.28	0.016685								0	0	0	0.18227	1	27325	27325		27.223	11.074	1				21265	6643;7608;8358	11832	11833	27183	27183					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.8	1	102.81	102.31	103.31	0.016685								0	0	0	0.14229	1	27333	27333		36.506	16.092	1				21266	6643;7608;8358	11832	11833	27184	27184					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.19	1	111.18	110.68	111.68	-0.013939								0	0	0	0.19189	1	28948	28948		24.991	5.734	1				21267	6643;7608;8358	11832	11833	27185	27185					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8138427734375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.73	1	111.72	111.22	112.22	-0.015625								0	0	0	0.20977	1	29065	29065		19.362	5.4559	1				21268	6643;7608;8358	11832	11833	27186	27186					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.86	1	111.84	111.34	112.34	-0.015625								0	0	0	0.20977	1	29100	29100		19.362	5.4559	1				21269	6643;7608;8358	11832	11833	27187	27187					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.813720703125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.06	1	112.05	111.55	112.55	-0.015625								0	0	0	0.21971	1	29154	29154		16.149	3.9084	1				21270	6643;7608;8358	11832	11833	27188	27188					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.35	1	113.34	112.84	113.84	-0.017303								0	0	0	0.19189	1	29468	29468		24.991	7.8781	1				21271	6643;7608;8358	11832	11833	27189	27189					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8148193359375	2	585.813325	1169.6121	0.42796	0.00025071	-0.052498	-3.0754E-05	0.37546	0.00021995	585.8141783939722	74.133	18.035	74.102	72.978	91.013	-0.030655					1567	790	6	0	0	0	0.00010125	71	19164	18839;18889;18942;18987;19033;19078;19103;19120;19164;19207;19250;19298;19346;19392;19434;19479;19526;19569;19611;19662;19712;19764;19812;19857;19906;19954;20006;20053;20103;20148;20199;20246;20294;20345;20397;20443;20489;20533;20564;20594;22121;22211;22438;22487;22650;22699;22749;22798;22852;22961;23009;23105;23139;23152;23195;23240;23285;23319;23326;23341;23366;23555;23605;23658;23755;23792;23833;23873;23919;23966;24045		140.63	75.398	1	178080000			21272	6643;7608;8358	11832	11833	27190;27191;27192;27193;27194;27195;27196;27197;27198;27199;27200;27201;27202;27203;27204;27205;27206;27207;27208;27209;27210;27211;27212;27213;27214;27215;27216;27217;27218;27219;27220;27221;27222;27223;27224;27225;27226;27227;27228;27229;27230;27231;27232;27233;27234;27235;27236;27237;27238;27239;27240;27241;27242;27243;27244;27245;27246;27247;27248;27249;27250;27251;27252;27253;27254;27255;27256;27257;27258;27259;27260	27198					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8136596679688	2	585.813325	1169.6121	0.39309	0.00023028	-0.45152	-0.00026451	-0.058431	-3.423E-05	585.8132038207839	95.973	1.6898	95.97	95.551	97.24	-0.0038147					271	163	3	0	0	0	0.05341	12	25929	25567;25608;25648;25690;25726;25772;25809;25855;25929;25966;25969;26008		51.63	36.506	1	251330			21273	6643;7608;8358	11832	11833	27261;27262;27263;27264;27265;27266;27267;27268;27269;27270;27271;27272	27269					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8134155273438	2	585.813325	1169.6121	0.34438	0.00020175	-0.29972	-0.00017558	0.044668	2.6167E-05	585.8133562597025	97.95	0.86279	97.943	97.237	98.1	-0.0068283					133	92	2	0	0	0	0.04299	5	26090	26045;26090;26124;26157;26194		55.503	32.354	1	406100			21274	6643;7608;8358	11832	11833	27273;27274;27275;27276;27277	27274					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8132934570312	2	585.813325	1169.6121	0.29647	0.00017368	-0.38512	-0.00022561	-0.088651	-5.1933E-05	585.8133915458719	100.97	0.39828	100.97	100.69	101.09	-0.0054703					91	57	2	0	0	0	0.11201	2	26937	26937;26953		36.506	17.249	1	260380			21275	6643;7608;8358	11832	11833	27278;27279	27278					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.581	1	91.582	91.082	92.082	0.00046539								0	0	0	0.15548	1	24315	24315		33.445	16.503	1				21276	6643;7608;8358	11832	11833	27280	27280					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.813232421875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.743	1	91.743	91.243	92.243	0.00046539								0	0	0	0.12621	1	24365	24365		40.239	18.702	1				21277	6643;7608;8358	11832	11833	27281	27281					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.884	1	91.884	91.384	92.384	0.00046539								0	0	0	0.14907	1	24409	24409		34.932	14.518	1				21278	6643;7608;8358	11832	11833	27282	27282					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8138427734375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.907	1	98.9	98.4	99.4	-0.006897								0	0	0	0.21971	1	26499	26499		16.149	1.3108	1				21279	6643;7608;8358	11832	11833	27283	27283					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8134155273438	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.03	1	99.023	98.523	99.523	-0.006897								0	0	0	0.14229	1	26530	26530		36.506	4.2007	1				21280	6643;7608;8358	11832	11833	27284	27284					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.148	1	99.141	98.641	99.641	-0.006897								0	0	0	0.16485	1	26561	26561		31.268	8.1199	1				21281	6643;7608;8358	11832	11833	27285	27285					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8136596679688	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.285	1	99.278	98.778	99.778	-0.006897								0	0	0	0.20977	1	26594	26594		19.362	4.5237	1				21282	6643;7608;8358	11832	11833	27286	27286					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.813720703125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.404	1	99.397	98.897	99.897	-0.006897								0	0	0	0.1768	1	26625	26625		28.495	8.08	1				21283	6643;7608;8358	11832	11833	27287	27287					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.547	1	99.54	99.04	100.04	-0.006897								0	0	0	0.171	1	26658	26658		29.841	4.4413	1				21284	6643;7608;8358	11832	11833	27288	27288					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8138427734375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.681	1	99.674	99.174	100.17	-0.006897								0	0	0	0.14907	1	26692	26692		34.932	8.6639	1				21285	6643;7608;8358	11832	11833	27289	27289					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.07	1	100.06	99.561	100.56	-0.006897								0	0	0	0.20303	1	26784	26784		21.537	1.0834	1				21286	6643;7608;8358	11832	11833	27290	27290					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8138427734375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.21	1	100.2	99.7	100.7	-0.006897								0	0	0	0.073524	1	26816	26816		53.833	13.883	1				21287	6643;7608;8358	11832	11833	27291	27291					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.26	1	100.25	99.755	100.75	-0.006897								0	0	0	0.20303	1	26829	26829		21.537	2.28	1				21288	6643;7608;8358	11832	11833	27292	27292					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.81396484375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.27	1	100.27	99.766	100.77	-0.006897								0	0	0	0.111	1	26832	26832		43.772	17.504	1				21289	6643;7608;8358	11832	11833	27293	27293					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.813720703125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.34	1	100.33	99.831	100.83	-0.006897								0	0	0	0.19956	1	26848	26848		22.658	2.2045	1				21290	6643;7608;8358	11832	11833	27294	27294					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.46	1	100.46	99.957	100.96	-0.006897								0	0	0	0.14229	1	26877	26877		36.506	13.358	1				21291	6643;7608;8358	11832	11833	27295	27295					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.814208984375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.59	1	100.58	100.08	101.08	-0.006897								0	0	0	0.14229	1	26905	26905		36.506	11.515	1				21292	6643;7608;8358	11832	11833	27296	27296					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8133544921875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.73	1	100.72	100.22	101.22	-0.006897								0	0	0	0.16485	1	26931	26931		31.268	10.854	1				21293	6643;7608;8358	11832	11833	27297	27297					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8135986328125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.1	1	101.09	100.59	101.59	-0.0054703								0	0	0	0.171	1	27004	27004		29.841	4.4413	1				21294	6643;7608;8358	11832	11833	27298	27298					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8136596679688	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.22	1	101.21	100.71	101.71	-0.0054703								0	0	0	0.1351	1	27028	27028		38.176	11.907	1				21295	6643;7608;8358	11832	11833	27299	27299					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.3	1	101.29	100.79	101.79	-0.0054703								0	0	0	0.16485	1	27045	27045		31.268	10.815	1				21296	6643;7608;8358	11832	11833	27300	27300					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8129272460938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.34	1	101.33	100.83	101.83	-0.0054703								0	0	0	0.14229	1	27055	27055		36.506	4.2007	1				21297	6643;7608;8358	11832	11833	27301	27301					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.46	1	101.46	100.96	101.96	-0.0054703								0	0	0	0.19189	1	27085	27085		24.991	10.153	1				21298	6643;7608;8358	11832	11833	27302	27302					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8131713867188	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.61	1	101.6	101.1	102.1	-0.0054703								0	0	0	0.20303	1	27120	27120		21.537	2.28	1				21299	6643;7608;8358	11832	11833	27303	27303					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8137817382812	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.73	1	101.73	101.23	102.23	-0.0054703								0	0	0	0.19189	1	27151	27151		24.991	8.0487	1				21300	6643;7608;8358	11832	11833	27304	27304					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8131713867188	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.85	1	101.85	101.35	102.35	-0.0054703								0	0	0	0.18639	1	27176	27176		26.268	0.86883	1				21301	6643;7608;8358	11832	11833	27305	27305					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8134765625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.99	1	101.99	101.49	102.49	-0.0033646								0	0	0	0.1768	1	27206	27206		28.495	3.0952	1				21302	6643;7608;8358	11832	11833	27306	27306					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8132934570312	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.04	1	102.04	101.54	102.54	-0.0033646								0	0	0	0.19189	1	27215	27215		24.991	7.8781	1				21303	6643;7608;8358	11832	11833	27307	27307					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.24	1	102.24	101.74	102.74	-0.0033646								0	0	0	0.12621	1	27252	27252		40.239	14.84	1				21304	6643;7608;8358	11832	11833	27308	27308					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8132934570312	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.36	1	102.36	101.86	102.86	-0.0033646								0	0	0	0.14229	1	27273	27273		36.506	4.2007	1				21305	6643;7608;8358	11832	11833	27309	27309					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8136596679688	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.49	1	102.48	101.98	102.98	-0.0033646								0	0	0	0.1351	1	27297	27297		38.176	5.8701	1				21306	6643;7608;8358	11832	11833	27310	27310					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8131103515625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.5	1	102.5	102	103	-0.0033646								0	0	0	0.111	1	27300	27300		43.772	7.6454	1				21307	6643;7608;8358	11832	11833	27311	27311					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8140258789062	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.52	1	102.52	102.02	103.02	-0.0033646								0	0	0	0.080859	1	27304	27304		51.63	18.844	1				21308	6643;7608;8358	11832	11833	27312	27312					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8121337890625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.61	1	102.61	102.11	103.11	-0.0033646								0	0	0	0.171	1	27322	27322		29.841	9.387	1				21309	6643;7608;8358	11832	11833	27313	27313					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8126831054688	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.73	1	102.73	102.23	103.23	-0.0033646								0	0	0	0.20303	1	27348	27348		21.537	2.28	1				21310	6643;7608;8358	11832	11833	27314	27314					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.813232421875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.85	1	102.85	102.35	103.35	-0.0033646								0	0	0	0.20977	1	27375	27375		19.362	4.5237	1				21311	6643;7608;8358	11832	11833	27315	27315					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.87	1	102.87	102.37	103.37	-0.0033646								0	0	0	0.16485	1	27379	27379		31.268	10.815	1				21312	6643;7608;8358	11832	11833	27316	27316					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8140869140625	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.95	1	102.94	102.44	103.44	-0.0033646								0	0	0	0.16485	1	27395	27395		31.268	10.854	1				21313	6643;7608;8358	11832	11833	27317	27317					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.16	1	110.17	109.67	110.67	0.0099411								0	0	0	0.19189	1	28797	28797		24.991	5.734	1				21314	6643;7608;8358	11832	11833	27318	27318					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8145751953125	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.47	1	110.48	109.98	110.98	0.0099411								0	0	0	0.14229	1	28848	28848		36.506	13.358	1				21315	6643;7608;8358	11832	11833	27319	27319					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8135375976562	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.16	1	111.17	110.67	111.67	0.01152								0	0	0	0.19189	1	28966	28966		24.991	1.8425	1				21316	6643;7608;8358	11832	11833	27320	27320					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8139038085938	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.36	1	111.37	110.87	111.87	0.01152								0	0	0	0.18053	1	29003	29003		27.629	4.4804	1				21317	6643;7608;8358	11832	11833	27321	27321					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.81396484375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.53	1	111.54	111.04	112.04	0.01152								0	0	0	0.22511	1	29037	29037		14.405	0.49933	1				21318	6643;7608;8358	11832	11833	27322	27322					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8142700195312	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.74	1	111.76	111.26	112.26	0.0131								0	0	0	0.171	1	29091	29091		29.841	10.584	1				21319	6643;7608;8358	11832	11833	27323	27323					0.03407486654191416
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8136596679688	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.15	1	112.17	111.67	112.67	0.0131								0	0	0	0.19189	1	29195	29195		24.991	5.734	1				21320	6643;7608;8358	11832	11833	27324	27324					0.03407486654191416
KYPGFLLNNF	10	Unmodified	_KYPGFLLNNF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3372192382812	2	606.824224	1211.63389	0.2801	0.00016997	1.112	0.00067476	1.3921	0.00084473	606.8251786787372	69.642	0.63322	69.642	69.339	69.972	0					48	22	3	0	0	0	0.26647	1	17582	17582		32.786	21.986	1	637940			21321	1654	11833	11834	27325	27325					0.036542914027450024
KYPGFLLNNF	10	Unmodified	_KYPGFLLNNF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3374633789062	2	606.824224	1211.63389	0.32441	0.00019686	0.88461	0.0005368	1.209	0.00073366	606.8249977550918	69.65	0.73727	69.716	69.395	70.133	0.066048					54	25	3	0	0	0	0.28187	1	17575	17575		34.402	24.328	1	681610			21322	1654	11833	11834	27326	27326					0.036542914027450024
KYPGHLAAITL	11	Unmodified	_KYPGHLAAITL_					0	0	0		ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.3455810546875	2	592.345323	1182.67609	0.67928	0.00040237	-0.057081	-3.3812E-05	0.6222	0.00036856	592.345249729201	47.542	0.46956	47.542	47.302	47.771	0					41	16	3	0	0	0	0.021087	1	10816	10816		61.602	28.816	1	584680			21323	1700	11834	11835	27327	27327					0.09206266811133901
KYPGHLAAITL	11	Unmodified	_KYPGHLAAITL_					0	0	0		ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	592.345323	1182.67609	0.54762	0.00032438	0.128	7.5818E-05	0.67562	0.0004002	592.345335963626	47.459	0.56477	47.509	47.241	47.806	0.050644	-0.019213	0.0001548	NaN	61.602	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	572470			21324	1700	11834	11835							0.09206266811133901
KYPGHLAAITL	11	Unmodified	_KYPGHLAAITL_					0	0	0		ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	ENSG00000101442|ENST00000243903|ACTR5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	592.345323	1182.67609	0.83819	0.0004965	-0.082667	-4.8967E-05	0.75552	0.00044753	592.3452381996202	47.491	0.47233	47.535	47.298	47.771	0.04332	0.0061282	-9.4768E-05	NaN	61.602	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	631480			21325	1700	11834	11835							0.09206266811133901
KYPHYFPLL	9	Unmodified	_KYPHYFPLL_					0	0	0		ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3223266601562	2	589.32386	1176.63317	0.32631	0.0001923	-0.35876	-0.00021143	-0.032453	-1.9125E-05	589.3234473725381	59.186	1.1878	59.186	58.682	59.87	0					118	41	4	0	0	0	0.0040732	1	14420	14420		101.72	50.092	1	1690200			21326	6597	11835	11836	27328	27328					0.05191496753695901
KYPHYFPLL	9	Unmodified	_KYPHYFPLL_					0	0	0		ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.3272705078125	2	589.32386	1176.63317	0.36413	0.00021459	-0.28398	-0.00016736	0.080149	4.7234E-05	589.3234595725199	58.978	1.0987	59.069	58.612	59.71	0.091305					106	38	4	0	0	0	0.013276	1	14372	14372		74.396	56.261	1	1781100			21327	6597	11835	11836	27329	27329					0.05191496753695901
KYPHYFPLL	9	Unmodified	_KYPHYFPLL_					0	0	0		ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.322998046875	2	589.32386	1176.63317	0.48467	0.00028563	-0.5025	-0.00029613	-0.017826	-1.0505E-05	589.3232467578695	59.143	1.1343	59.129	58.712	59.847	-0.014267					110	39	4	0	0	0	0.031932	1	14411	14411		74.396	36.245	1	2111100			21328	6597	11835	11836	27330	27330					0.05191496753695901
KYPHYFPVM	9	Oxidation (M)	_KYPHYFPVM(Oxidation (M))_		KYPHYFPVM(1)		KYPHYFPVM(100)	0	0	1		ENSG00000123213|ENST00000380985|NLN;ENST00000506677.1_1_5:65076017-65081739:+|nuORF;ENST00000506539.5_1_5:65018131-65088776:+|nuORF	ENSG00000123213|ENST00000380985|NLN	ENSG00000123213|ENST00000380985|NLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.2921752929688	2	599.291702	1196.56885	0.34713	0.00020803	-0.25574	-0.00015326	0.091385	5.4766E-05	599.2918988925597	41.856	1.3862	41.856	41.596	42.982	0					133	54	4	0	0	0	0.0030686	3	9197	9095;9144;9197		101.72	83.576	1	2098700			21329	3093	11836	11837	27331;27332;27333	27333		387			-0.0215702639477513
KYPHYFPVM	9	Oxidation (M)	_KYPHYFPVM(Oxidation (M))_		KYPHYFPVM(1)		KYPHYFPVM(89)	0	0	1		ENSG00000123213|ENST00000380985|NLN;ENST00000506677.1_1_5:65076017-65081739:+|nuORF;ENST00000506539.5_1_5:65018131-65088776:+|nuORF	ENSG00000123213|ENST00000380985|NLN	ENSG00000123213|ENST00000380985|NLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.7931518554688	2	599.291702	1196.56885	0.54964	0.00032939	-0.42038	-0.00025193	0.12926	7.7464E-05	599.2916214031974	41.674	1.0706	41.764	41.639	42.709	0.090252					98	42	3	0	0	0	0.0046213	3	9033	9033;9081;9144		89.427	77.186	1	2720300			21330	3093	11836	11837	27334;27335;27336	27334		387			-0.0215702639477513
KYPHYFPVM	9	Oxidation (M)	_KYPHYFPVM(Oxidation (M))_		KYPHYFPVM(1)		KYPHYFPVM(89)	0	0	1		ENSG00000123213|ENST00000380985|NLN;ENST00000506677.1_1_5:65076017-65081739:+|nuORF;ENST00000506539.5_1_5:65018131-65088776:+|nuORF	ENSG00000123213|ENST00000380985|NLN	ENSG00000123213|ENST00000380985|NLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.292236328125	2	599.291702	1196.56885	0.61841	0.00037061	0.17768	0.00010648	0.79609	0.00047709	599.2919706439031	41.596	1.7082	41.693	40.96	42.668	0.096626					139	64	3	0	0	0	0.0046213	3	8908	8908;9011;9064		89.427	71.28	1	3385300			21331	3093	11836	11837	27337;27338;27339	27337		387			-0.0215702639477513
KYPKQSKNGFV	11	Unmodified	_KYPKQSKNGFV_					0	0	0			REV__ENSG00000185483|ENST00000371079|ROR1	REV__ENSG00000185483|ENST00000371079|ROR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	648.0409545898438	2	648.358962	1294.70337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.091	1	98.091	97.591	98.591	0								0	0	0	0.37707	1	26240	26240		2.2828	0.80087	1		+		21332	18383	11837	11838	27340	27340					0.06780750351481402
KYPKVWEGF	9	Unmodified	_KYPKVWEGF_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.2711181640625	2	577.305667	1152.59678	0.37765	0.00021802	0.15294	8.8296E-05	0.5306	0.00030632	577.3056078228827	50.226	0.67503	50.226	49.894	50.569	0					51	24	3	0	0	0	0.12329	1	11614	11614		49.554	31.408	1	778470			21333	3229	11838	11839	27341	27341					0.026586198569930275
KYPKVWEGF	9	Unmodified	_KYPKVWEGF_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.2709350585938	2	577.305667	1152.59678	0.78334	0.00045223	-0.41064	-0.00023706	0.37271	0.00021516	577.3054038803855	50.179	0.67107	50.224	49.905	50.576	0.044891					55	24	3	0	0	0	0.090256	1	11589	11589		57.722	35.975	1	799910			21334	3229	11838	11839	27342	27342					0.026586198569930275
KYPKVWEGF	9	Unmodified	_KYPKVWEGF_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.2710571289062	2	577.305667	1152.59678	0.76287	0.00044041	-0.4894	-0.00028253	0.27347	0.00015788	577.3054004241789	50.205	0.66502	50.226	49.939	50.604	0.020691					71	24	4	0	0	0	0.090256	1	11601	11601		57.722	42.884	1	766860			21335	3229	11838	11839	27343	27343					0.026586198569930275
KYPLLISRI	9	Unmodified	_KYPLLISRI_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000608543.1_1_1:155931890-155932010:-|nuORF;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8529052734375	2	551.852784	1101.69102	0.56771	0.00031329	0.17963	9.9128E-05	0.74734	0.00041242	551.8528066081637	51.322	2.216	51.322	50.108	52.324	0					207	81	3	0	0	0	0.027957	6	12022	11755;11806;11869;11922;12022;12075		61.09	10.18	1	2369800			21336	2733	11839	11840	27344;27345;27346;27347;27348;27349	27348					0.14423758679117782
KYPLLISRI	9	Unmodified	_KYPLLISRI_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000608543.1_1_1:155931890-155932010:-|nuORF;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8529052734375	2	551.852784	1101.69102	0.52694	0.0002908	0.17974	9.9191E-05	0.70669	0.00038999	551.8527879352579	51.386	2.1162	51.432	50.162	52.278	0.046577					222	77	4	0	0	0	0.016571	7	12007	11742;11802;11865;11914;11958;12007;12053		69.338	11.675	1	2519200			21337	2733	11839	11840	27350;27351;27352;27353;27354;27355;27356	27355					0.14423758679117782
KYPLLISRI	9	Unmodified	_KYPLLISRI_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000608543.1_1_1:155931890-155932010:-|nuORF;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8530883789062	2	551.852784	1101.69102	0.4839	0.00026704	0.29413	0.00016232	0.77803	0.00042936	551.8528575357453	51.598	2.3361	51.608	50.114	52.451	0.0095634					250	87	4	0	0	0	0.027957	6	12054	11743;11793;11908;11954;12054;12107		61.09	5.7764	1	2642500			21338	2733	11839	11840	27357;27358;27359;27360;27361;27362	27361					0.14423758679117782
KYPLLLDNI	9	Unmodified	_KYPLLLDNI_					0	0	0		ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.821533203125	2	544.82115	1087.62775	0.65609	0.00035745	-0.53979	-0.00029409	0.1163	6.3361E-05	544.8207504204806	66.197	2.4655	66.197	65.157	67.623	0					247	87	4	0	0	0	1.6536E-07	5	16575	16422;16470;16524;16575;16622		173.69	23.772	1	3826800			21339	7912	11840	11841	27363;27364;27365;27366;27367	27366					0.08743773171227076
KYPLLLDNI	9	Unmodified	_KYPLLLDNI_					0	0	0		ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.8215942382812	2	544.82115	1087.62775	0.74694	0.00040695	-0.62574	-0.00034091	0.1212	6.6034E-05	544.8206881812753	66.05	2.0295	66.134	65.159	67.188	0.083832					206	73	4	0	0	0	3.6949E-07	7	16520	16336;16376;16426;16474;16520;16568;16612		165.72	34.067	1	3476600			21340	7912	11840	11841	27368;27369;27370;27371;27372;27373;27374	27372					0.08743773171227076
KYPLLLDNI	9	Unmodified	_KYPLLLDNI_					0	0	0		ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.821533203125	2	544.82115	1087.62775	0.65403	0.00035633	-0.55623	-0.00030305	0.097794	5.328E-05	544.8207425596603	66.239	2.1176	66.226	65.096	67.213	-0.013588					220	76	4	0	0	0	1.6536E-07	4	16566	16516;16566;16610;16659		173.69	23.772	1	3449800			21341	7912	11840	11841	27375;27376;27377;27378	27376					0.08743773171227076
KYPLLLESI	9	Unmodified	_KYPLLLESI_					0	0	0		nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11;ENST00000461678.1_1_1:156915777-156917159:-|nuORF;ARHGEF11|p.T962Nfs*7|1|0.37|ENSG00000132694|chr1:156944421-156944422|TA/-|frameshift_variant	nc|ENSG00000132694|O15085|ARHGEF11	nc|ENSG00000132694|O15085|ARHGEF11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.3239135742188	2	538.323525	1074.6325	0.47502	0.00025571	0.5661	0.00030474	1.0411	0.00056046	538.323589786416	67.645	1.4007	67.645	66.825	68.226	0					93	49	3	0	0	0	0.014206	1	16939	16939		72.968	34.994	1	512330			21342	3659	11841	11842	27379	27379					0.09816657313990618
KYPLLLESI	9	Unmodified	_KYPLLLESI_					0	0	0		nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11;ENST00000461678.1_1_1:156915777-156917159:-|nuORF;ARHGEF11|p.T962Nfs*7|1|0.37|ENSG00000132694|chr1:156944421-156944422|TA/-|frameshift_variant	nc|ENSG00000132694|O15085|ARHGEF11	nc|ENSG00000132694|O15085|ARHGEF11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.32421875	2	538.323525	1074.6325	0.46003	0.00024764	0.2587	0.00013926	0.71873	0.00038691	538.3234345059293	67.453	1.2299	67.531	66.82	68.05	0.078041					103	43	3	0	0	0	0.04299	1	16861	16861		55.503	23.197	1	579540			21343	3659	11841	11842	27380	27380					0.09816657313990618
KYPLLLESI	9	Unmodified	_KYPLLLESI_					0	0	0		nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11;ENST00000461678.1_1_1:156915777-156917159:-|nuORF;ARHGEF11|p.T962Nfs*7|1|0.37|ENSG00000132694|chr1:156944421-156944422|TA/-|frameshift_variant	nc|ENSG00000132694|O15085|ARHGEF11	nc|ENSG00000132694|O15085|ARHGEF11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2769165039062	2	538.323525	1074.6325	0.41346	0.00022258	0.66349	0.00035717	1.0769	0.00057975	538.3236808775179	67.548	1.4161	67.531	66.839	68.255	-0.016296					106	49	3	0	0	0	0.075356	1	17038	17038		55.503	15.545	1	579860			21344	3659	11841	11842	27381	27381					0.09816657313990618
KYPLLLQSI	9	Unmodified	_KYPLLLQSI_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.8319702148438	2	537.831517	1073.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.648	1	64.648	64.148	65.148	0								0	0	0	0.0060707	1	16082	16082		86.332	30.155	1				21345	1073	11842	11843	27382	27382					0.11460363550895636
KYPLLLQSI	9	Unmodified	_KYPLLLQSI_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.8316650390625	2	537.831517	1073.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.4	1	65.4	64.9	65.9	0								0	0	0	1.1373E-10	1	16312	16312		143.91	73.577	1				21346	1073	11842	11843	27383	27383					0.11460363550895636
KYPLLLQSI	9	Unmodified	_KYPLLLQSI_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.8316040039062	2	537.831517	1073.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.573	1	65.573	65.073	66.073	0								0	0	0	0.0015538	1	16365	16365		93.166	35.444	1				21347	1073	11842	11843	27384	27384					0.11460363550895636
KYPLLLQSI	9	Unmodified	_KYPLLLQSI_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.8322143554688	2	537.831517	1073.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.569	1	64.662	64.162	65.162	0.09288								0	0	0	0.0079895	1	16050	16050		83.429	31.799	1				21348	1073	11842	11843	27385	27385					0.11460363550895636
KYPLLLQSI	9	Unmodified	_KYPLLLQSI_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.8316650390625	2	537.831517	1073.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.149	1	65.238	64.738	65.738	0.088882								0	0	0	1.3123E-06	1	16227	16227		128.93	46.403	1				21349	1073	11842	11843	27386	27386					0.11460363550895636
KYPLLLQSI	9	Unmodified	_KYPLLLQSI_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.8316040039062	2	537.831517	1073.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.318	1	65.407	64.907	65.907	0.088882								0	0	0	2.556E-06	1	16279	16279		117.76	52.526	1				21350	1073	11842	11843	27387	27387					0.11460363550895636
KYPLLLQSI	9	Unmodified	_KYPLLLQSI_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.8316040039062	2	537.831517	1073.64848	0.39982	0.00021503	0.1478	7.9491E-05	0.54762	0.00029452	537.8315042805888	65.269	2.6489	65.258	63.656	66.305	-0.011337					240	96	4	0	0	0	0.00078391	2	16312	16312;16362		125.53	50.6	1	3075200			21351	1073	11842	11843	27388;27389	27388					0.11460363550895636
KYPLNLYLL	9	Unmodified	_KYPLNLYLL_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.8394165039062	2	568.839342	1135.66413	0.21145	0.00012028	-0.29728	-0.00016911	-0.08583	-4.8823E-05	568.8391837272087	73.198	1.3626	73.198	72.667	74.029	0					166	48	5	0	0	0	0.0032391	5	18726	18604;18681;18726;18767;18810		100.37	52.026	1	5633700			21352	5205	11843	11844	27390;27391;27392;27393;27394	27392					0.10172650067920586
KYPLNLYLL	9	Unmodified	_KYPLNLYLL_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.839111328125	2	568.839342	1135.66413	0.27363	0.00015565	-0.41334	-0.00023512	-0.13971	-7.9475E-05	568.8391347123192	73.177	1.4667	73.231	72.681	74.148	0.053833					185	52	5	0	0	0	0.0022761	5	18686	18590;18642;18686;18735;18787		108	59.651	1	5714500			21353	5205	11843	11844	27395;27396;27397;27398;27399	27397					0.10172650067920586
KYPLNLYLL	9	Unmodified	_KYPLNLYLL_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.8394165039062	2	568.839342	1135.66413	0.31487	0.00017911	-0.35234	-0.00020042	-0.037467	-2.1313E-05	568.8391286901026	73.333	1.3178	73.303	72.684	74.001	-0.029305					158	47	4	0	0	0	0.0032391	3	18742	18742;18788;18834		100.37	52.026	1	4918700			21354	5205	11843	11844	27400;27401;27402	27400					0.10172650067920586
KYPLPVFSTF	10	Unmodified	_KYPLPVFSTF_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C;DENND4C|p.Y474Ffs*30|1|0.33|ENSG00000137145|chr9:19305461-19305461|A/-|frameshift_variant;DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;DENND4A|p.L560Ffs*9|1|0.16|ENSG00000174485|chr15:65717887-65717905|AAATGCCTCTTGGATTTCC/-|frameshift_variant;ENST00000568515.1_1_15:66007788-66048788:-|nuORF	nc|ENSG00000137145|Q5VZ89-3|DENND4C;DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.802001953125	2	599.828975	1197.6434	0.53583	0.00032141	0.25302	0.00015177	0.78885	0.00047318	599.8290940158461	73.085	0.88123	73.085	72.56	73.441	0					55	31	2	0	0	0	0.25821	1	18688	18688		28.495	18.421	1	150720			21355	261;4030	11844	11845	27403	27403					0.05248059688256035
KYPLPVFSTF	10	Unmodified	_KYPLPVFSTF_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C;DENND4C|p.Y474Ffs*30|1|0.33|ENSG00000137145|chr9:19305461-19305461|A/-|frameshift_variant;DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;DENND4A|p.L560Ffs*9|1|0.16|ENSG00000174485|chr15:65717887-65717905|AAATGCCTCTTGGATTTCC/-|frameshift_variant;ENST00000568515.1_1_15:66007788-66048788:-|nuORF	nc|ENSG00000137145|Q5VZ89-3|DENND4C;DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.802490234375	2	599.828975	1197.6434	0.47589	0.00028545	0.04106	2.4629E-05	0.51695	0.00031008	600.3304977413751	73.062	1.0416	73.116	72.484	73.525	0.053841					63	37	2	0	0	0	0.23997	1	18667	18667		40.239	25.401	1	172190			21356	261;4030	11844	11845	27404	27404					0.05248059688256035
KYPLPVFSTF	10	Unmodified	_KYPLPVFSTF_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C;DENND4C|p.Y474Ffs*30|1|0.33|ENSG00000137145|chr9:19305461-19305461|A/-|frameshift_variant;DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;DENND4A|p.L560Ffs*9|1|0.16|ENSG00000174485|chr15:65717887-65717905|AAATGCCTCTTGGATTTCC/-|frameshift_variant;ENST00000568515.1_1_15:66007788-66048788:-|nuORF	nc|ENSG00000137145|Q5VZ89-3|DENND4C;DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3035888671875	2	599.828975	1197.6434	0.49574	0.00029736	0.17309	0.00010382	0.66883	0.00040118	599.8288739396579	73.022	1.0173	72.993	72.486	73.503	-0.029305					57	36	2	0	0	0	0.26476	1	18616	18616		33.445	24.699	1	161860			21357	261;4030	11844	11845	27405	27405					0.05248059688256035
KYPNVFKKI	9	Unmodified	_KYPNVFKKI_					0	0	0		ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000168710|O43865-2|AHCYL1	ENSG00000168710|ENST00000369799|AHCYL1	ENSG00000168710|ENST00000369799|AHCYL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8446655273438	2	568.844959	1135.67537	0.61203	0.00034815	-0.2648	-0.00015063	0.34723	0.00019752	568.8446877483645	33.885	2.2405	33.951	32.355	34.595	0.06636					177	80	3	0	0	0	0.11461	1	6433	6433		36.127	24.487	1	413140			21358	6295	11845	11846	27406	27406					0.11295472162078113
KYPNVFKKI	9	Unmodified	_KYPNVFKKI_					0	0	0		ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000168710|O43865-2|AHCYL1	ENSG00000168710|ENST00000369799|AHCYL1	ENSG00000168710|ENST00000369799|AHCYL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.8450317382812	2	568.844959	1135.67537	0.12373	7.0381E-05	0.1753	9.9717E-05	0.29902	0.0001701	568.8449922509784	33.889	2.4546	33.956	32.148	34.603	0.066704					189	88	3	0	0	0	0.15943	1	6632	6632		32.786	16.939	1	485680			21359	6295	11845	11846	27407	27407					0.11295472162078113
KYPNVFKKI	9	Unmodified	_KYPNVFKKI_					0	0	0		ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000168710|O43865-2|AHCYL1	ENSG00000168710|ENST00000369799|AHCYL1	ENSG00000168710|ENST00000369799|AHCYL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	568.844959	1135.67537	0.33419	0.0001901	-0.11434	-6.5044E-05	0.21984	0.00012506	568.8447766082018	34.142	2.2816	34.142	32.307	34.588	0	0.12589	-5.1926E-05	NaN	36.127	176	81	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384840			21360	6295	11845	11846							0.11295472162078113
KYPNVKMHF	9	Oxidation (M)	_KYPNVKM(Oxidation (M))HF_		KYPNVKM(1)HF		KYPNVKM(48)HF	0	0	1		nc|ENSG00000117009|O15229-2|KMO;ENSG00000117009|ENST00000366559|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.3023681640625	2	590.302601	1178.59065	0.044677	2.6373E-05	0.24695	0.00014578	0.29163	0.00017215	590.3027178528488	25.222	1.8611	25.191	24.142	26.003	-0.031408					142	65	3	0	0	0	0.062246	1	3842	3842		48.346	31.404	1	351840			21361	12670;12671	11846	11847	27408	27408		968			0.008497783538132353
KYPQAIYTL	9	Unmodified	_KYPQAIYTL_					0	0	0		ENST00000520248.1_1_8:79672597-79674655:-|nuORF;ENST00000489193.1_1_3:86062505-86063063:+|nuORF;nc|ENSG00000137492|O43422-2|THAP12;ENSG00000137492|ENST00000260045|THAP12	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3536987304688	2	548.8055	1095.59645	0.37678	0.00020678	-0.054233	-2.9763E-05	0.32254	0.00017701	548.8056292384306	51.852	0.64811	51.852	51.648	52.296	0					75	23	5	0	0	0	0.08298	1	12169	12169		51.63	32.373	1	945220			21362	11471	11847	11848	27409	27409					0.052472001371370425
KYPQAIYTL	9	Unmodified	_KYPQAIYTL_					0	0	0		ENST00000520248.1_1_8:79672597-79674655:-|nuORF;ENST00000489193.1_1_3:86062505-86063063:+|nuORF;nc|ENSG00000137492|O43422-2|THAP12;ENSG00000137492|ENST00000260045|THAP12	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3536987304688	2	548.8055	1095.59645	0.52152	0.00028621	0.2003	0.00010993	0.72182	0.00039614	548.8055730605779	51.798	0.65877	51.844	51.647	52.305	0.046574					51	23	3	0	0	0	0.08298	1	12111	12111		51.63	26.23	1	1169300			21363	11471	11847	11848	27410	27410					0.052472001371370425
KYPQAIYTL	9	Unmodified	_KYPQAIYTL_					0	0	0		ENST00000520248.1_1_8:79672597-79674655:-|nuORF;ENST00000489193.1_1_3:86062505-86063063:+|nuORF;nc|ENSG00000137492|O43422-2|THAP12;ENSG00000137492|ENST00000260045|THAP12	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8059692382812	2	548.8055	1095.59645	0.25858	0.00014191	-0.20326	-0.00011155	0.055322	3.0361E-05	548.8057781553387	51.992	0.73035	51.991	51.71	52.44	-0.00081253					92	26	6	0	0	0	0.0059482	1	12188	12188		85.642	47.466	1	1161700			21364	11471	11847	11848	27411	27411					0.052472001371370425
KYPSDLPYM	9	Oxidation (M)	_KYPSDLPYM(Oxidation (M))_		KYPSDLPYM(1)		KYPSDLPYM(150)	0	0	1		nc|ENSG00000157554|P11308-2|ERG;nc|ENSG00000157554|P11308-1|ERG;ENSG00000157554|ENST00000288319|ERG;nc|ENSG00000157554|P11308-3|ERG	nc|ENSG00000157554|P11308-2|ERG	nc|ENSG00000157554|P11308-2|ERG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7672729492188	2	565.26535	1128.51615	0.10781	6.0942E-05	0.37695	0.00021308	0.48476	0.00027402	565.2654597985772	42.127	0.93455	42.127	41.799	42.734	0					72	34	3	0	0	0	6.1526E-05	4	9159	9067;9114;9159;9218		147.06	107.1	1	1743900			21365	5314	11848	11849	27412;27413;27414;27415	27414		640			-0.0429702924823232
KYPSDLPYM	9	Oxidation (M)	_KYPSDLPYM(Oxidation (M))_		KYPSDLPYM(1)		KYPSDLPYM(130)	0	0	1		nc|ENSG00000157554|P11308-2|ERG;nc|ENSG00000157554|P11308-1|ERG;ENSG00000157554|ENST00000288319|ERG;nc|ENSG00000157554|P11308-3|ERG	nc|ENSG00000157554|P11308-2|ERG	nc|ENSG00000157554|P11308-2|ERG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.2652587890625	2	565.26535	1128.51615	0.45193	0.00025546	0.021408	1.2101E-05	0.47334	0.00026756	565.2653954800516	41.749	0.85354	41.84	41.639	42.492	0.090248					70	34	3	0	0	0	0.00045155	3	9008	9008;9065;9115		129.77	93.645	1	2159400			21366	5314	11848	11849	27416;27417;27418	27416		640			-0.0429702924823232
KYPSDLPYM	9	Oxidation (M)	_KYPSDLPYM(Oxidation (M))_		KYPSDLPYM(1)		KYPSDLPYM(130)	0	0	1		nc|ENSG00000157554|P11308-2|ERG;nc|ENSG00000157554|P11308-1|ERG;ENSG00000157554|ENST00000288319|ERG;nc|ENSG00000157554|P11308-3|ERG	nc|ENSG00000157554|P11308-2|ERG	nc|ENSG00000157554|P11308-2|ERG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7677001953125	2	565.26535	1128.51615	0.54462	0.00030786	-0.075808	-4.2852E-05	0.46881	0.000265	565.2653942348996	41.745	0.91393	41.842	41.645	42.559	0.096626					72	34	3	0	0	0	0.00045155	2	8991	8991;9046		129.77	95.67	1	2874800			21367	5314	11848	11849	27419;27420	27419		640			-0.0429702924823232
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.2974243164062	2	566.29731	1130.58007	0.019364	1.0966E-05	0.096294	5.4531E-05	0.11566	6.5497E-05	566.2981177323511	75.971	1.6681	75.971	75.315	76.983	0					271	60	6	0	0	0	1.3869E-07	8	19452	19402;19452;19494;19535;19581;19623;19668;19718		174.73	102.81	1	55280000			21368	3909	11849	11850	27421;27422;27423;27424;27425;27426;27427;27428	27422					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.2986450195312	2	566.29731	1130.58007	0.30315	0.00017167	-0.35003	-0.00019822	-0.046888	-2.6552E-05	566.2980047592803	75.974	1.706	76.027	75.245	76.951	0.053413					197	61	6	0	0	0	1.3869E-07	9	19521	19378;19425;19475;19521;19568;19601;19625;19673;19722		174.73	102.81	1	57580000			21369	3909	11849	11850	27429;27430;27431;27432;27433;27434;27435;27436;27437	27432					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.2975463867188	2	566.29731	1130.58007	0.26087	0.00014773	-0.1299	-7.3563E-05	0.13096	7.4164E-05	566.2980242951052	76.003	1.6485	75.971	75.342	76.991	-0.031487					279	60	6	0	0	0	1.3869E-07	8	19452	19406;19452;19501;19551;19595;19643;19693;19737		174.73	130.87	1	77216000			21370	3909	11849	11850	27438;27439;27440;27441;27442;27443;27444;27445	27439					0.020001189710455947
KYPVLFQRI	9	Unmodified	_KYPVLFQRI_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3505249023438	2	582.350409	1162.68626	0.6275	0.00036542	0.022013	1.282E-05	0.64951	0.00037824	582.3503015017994	50.93	1.6132	50.93	49.843	51.456	0					142	59	3	0	0	0	0.023967	3	11895	11752;11807;11895		62.573	39.424	1	921560			21371	6477	11850	11851	27446;27447;27448	27448					0.11142874536380987
KYPVLFQRI	9	Unmodified	_KYPVLFQRI_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3507690429688	2	582.350409	1162.68626	0.62486	0.00036389	0.029442	1.7146E-05	0.6543	0.00038103	582.3502506081996	50.87	1.6498	50.917	49.878	51.528	0.046577					132	61	3	0	0	0	0.03069	4	11873	11748;11807;11873;11933		60.074	40.817	1	821510			21372	6477	11850	11851	27449;27450;27451;27452	27451					0.11142874536380987
KYPVLFQRI	9	Unmodified	_KYPVLFQRI_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.3508911132812	2	582.350409	1162.68626	0.65626	0.00038218	0.0201	1.1705E-05	0.67636	0.00039388	582.3502727405449	51.028	1.6946	51.038	49.839	51.533	0.0095673					142	63	3	0	0	0	0.018449	5	11857	11758;11807;11857;11901;11951		66.457	35.82	1	945140			21373	6477	11850	11851	27453;27454;27455;27456;27457	27455					0.11142874536380987
KYPVLVERI	9	Unmodified	_KYPVLVERI_					0	0	0		ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18	ENST00000510312.6_1_5:73178320-73193923:+|nuORF;ENSG00000104880|ENST00000668164|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8421630859375	2	558.842416	1115.67028	0.46747	0.00026124	-1.1195	-0.0006256	-0.65199	-0.00036436	558.8416167759071	44.694	1.1724	44.763	44.147	45.319	0.068569					102	42	3	0	0	0	0.19157	1	10028	10028		24.882	7.9393	1	735810			21374	8395;1928;12631	11851	11852	27458	27458					0.1170716829947196
KYPWKITPK	9	Unmodified	_KYPWKITPK_					0	0	0		ENST00000480924.3_1_12:87563815-87564172:-|nuORF	ENST00000480924.3_1_12:87563815-87564172:-|nuORF	ENST00000480924.3_1_12:87563815-87564172:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8456420898438	2	580.844959	1159.67537	0.35905	0.00020855	0.60293	0.00035021	0.96198	0.00055876	580.8453070884026	87.274	0.63342	87.361	87.065	87.698	0.08709					80	28	4	0	0	0	0.29638	1	23007	23007		9.3831	0.63772	1	527510			21375	11015	11852	11853	27459	27459					0.10191472162068749
KYPWKITPK	9	Unmodified	_KYPWKITPK_					0	0	0		ENST00000480924.3_1_12:87563815-87564172:-|nuORF	ENST00000480924.3_1_12:87563815-87564172:-|nuORF	ENST00000480924.3_1_12:87563815-87564172:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.844970703125	2	580.844959	1159.67537	0.36472	0.00021185	0.20701	0.00012024	0.57174	0.00033209	580.8451016379678	88.125	0.76586	88.214	87.908	88.674	0.089203					93	36	4	0	0	0	0.25431	1	23238	23238		9.3831	9.3831	1	489440			21376	11015	11852	11853	27460	27460					0.10191472162068749
KYPWKITPK	9	Unmodified	_KYPWKITPK_					0	0	0		ENST00000480924.3_1_12:87563815-87564172:-|nuORF	ENST00000480924.3_1_12:87563815-87564172:-|nuORF	ENST00000480924.3_1_12:87563815-87564172:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8453979492188	2	580.844959	1159.67537	0.41249	0.00023959	0.46498	0.00027008	0.87747	0.00050967	580.8452751765988	87.414	0.56374	87.409	87.147	87.71	-0.0056229					85	28	4	0	0	0	0.29638	1	22994	22994		9.3831	2.66	1	471550			21377	11015	11852	11853	27461	27461					0.10191472162068749
KYPWKITPK	9	Unmodified	_KYPWKITPK_					0	0	0		ENST00000480924.3_1_12:87563815-87564172:-|nuORF	ENST00000480924.3_1_12:87563815-87564172:-|nuORF	ENST00000480924.3_1_12:87563815-87564172:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	580.844959	1159.67537	0.35905	0.00020855	0.60293	0.00035021	0.96198	0.00055876	580.8453070884026	87.274	0.63342	87.361	87.065	87.698	0.08709	-0.017733	0.00011503	NaN	9.3831	80	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	527510			21378	11015	11852	11853							0.10191472162068749
KYPWKITPK	9	Unmodified	_KYPWKITPK_					0	0	0		ENST00000480924.3_1_12:87563815-87564172:-|nuORF	ENST00000480924.3_1_12:87563815-87564172:-|nuORF	ENST00000480924.3_1_12:87563815-87564172:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	580.844959	1159.67537	0.41249	0.00023959	0.46498	0.00027008	0.87747	0.00050967	580.8452751765988	87.414	0.56374	87.409	87.147	87.71	-0.0056229	0.029559	-4.5232E-05	NaN	9.3831	85	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	471550			21379	11015	11852	11853							0.10191472162068749
KYPYVAVML	9	Oxidation (M)	_KYPYVAVM(Oxidation (M))L_		KYPYVAVM(1)L		KYPYVAVM(55)L	0	0	1		ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6;ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENSG00000188243|ENST00000682242|COMMD6	ENSG00000188243|ENST00000682242|COMMD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.75	2	550.296453	1098.57835	0.50115	0.00027578	0.13258	7.2956E-05	0.63372	0.00034874	550.296526034246	56.976	0.91497	56.976	56.61	57.525	0					106	33	4	0	0	0	0.065123	1	13727	13727		54.774	24.549	1	2222000			21380	7738	11853	11854	27462	27462		850			0.033007418907800457
KYPYVAVML	9	Oxidation (M)	_KYPYVAVM(Oxidation (M))L_		KYPYVAVM(1)L		KYPYVAVM(74)L	0	0	1		ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6;ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENSG00000188243|ENST00000682242|COMMD6	ENSG00000188243|ENST00000682242|COMMD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2967529296875	2	550.296453	1098.57835	0.52368	0.00028818	0.080654	4.4384E-05	0.60433	0.00033256	550.2964814347139	56.843	0.79425	56.922	56.603	57.397	0.078674					77	29	3	0	0	0	0.013258	1	13669	13669		74.423	42.117	1	2167000			21381	7738	11853	11854	27463	27463		850			0.033007418907800457
KYPYVAVML	9	Oxidation (M)	_KYPYVAVM(Oxidation (M))L_		KYPYVAVM(1)L		KYPYVAVM(67)L	0	0	1		ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6;ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENSG00000188243|ENST00000682242|COMMD6	ENSG00000188243|ENST00000682242|COMMD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2967529296875	2	550.296453	1098.57835	0.52554	0.0002892	0.45016	0.00024772	0.9757	0.00053692	550.2966565556001	57.032	0.82371	57.012	56.729	57.553	-0.019077					69	29	3	0	0	0	0.05508	1	13759	13759		67.344	43.323	1	1918100			21382	7738	11853	11854	27464	27464		850			0.033007418907800457
KYQDDATFRQ	10	Unmodified	_KYQDDATFRQ_					0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.5478210449219	3	424.538681	1270.59421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.449	1	17.449	16.949	17.949	0								0	0	0	0.37925	1	1633	1633		2.6312	1.7057	1		+		21383	16557	11854	11855	27465	27465					-0.030258803386232103
KYQDILNEI	9	Unmodified	_KYQDILNEI_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.82275390625	2	568.303321	1134.59209	0.098149	5.5779E-05	0.44101	0.00025063	0.53916	0.0003064	568.3034117385548	59.538	0.60307	59.538	59.241	59.844	0					50	20	3	0	0	0	0.00082904	3	14505	14460;14505;14570		124.95	42.424	1	3281000			21384	4664	11855	11856	27466;27467;27468	27467					0.030176909235706262
KYQDILNEI	9	Unmodified	_KYQDILNEI_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8226928710938	2	568.303321	1134.59209	0.31406	0.00017848	0.36286	0.00020622	0.67692	0.0003847	568.3033462511669	59.324	0.66895	59.416	59.126	59.795	0.091301					55	23	3	0	0	0	0.016571	2	14409	14409;14506		69.338	15.934	1	3581000			21385	4664	11855	11856	27469;27470	27469					0.030176909235706262
KYQDILNEI	9	Unmodified	_KYQDILNEI_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.8225708007812	2	568.303321	1134.59209	0.40481	0.00023006	-0.039255	-2.2309E-05	0.36556	0.00020775	568.3032624296693	59.539	0.6608	59.528	59.225	59.886	-0.011486					40	22	2	0	0	0	0.00082904	1	14473	14473		124.95	45.357	1	3820200			21386	4664	11855	11856	27471	27471					0.030176909235706262
KYQDSLQSI	9	Unmodified	_KYQDSLQSI_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-8|SYNE1;ENST00000489156.1_1_6:152599163-152623219:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2803955078125	2	541.279846	1080.54514	0.60531	0.00032764	0.061281	3.317E-05	0.6666	0.00036081	541.2798104478663	38.353	0.77097	38.451	38.15	38.921	0.097527					58	27	3	0	0	0	0.059984	1	8019	8019		73.196	29.214	1	567770			21387	3536	11856	11857	27472	27472					0.008088313724329055
KYQDSLQSI	9	Unmodified	_KYQDSLQSI_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-8|SYNE1;ENST00000489156.1_1_6:152599163-152623219:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	541.279846	1080.54514	0.5452	0.0002951	0.16421	8.8882E-05	0.7094	0.00038399	541.2799232733192	38.41	0.75962	38.501	38.183	38.942	0.090881	0.024923	6.0292E-05	NaN	81.915	66	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	557890			21388	3536	11856	11857							0.008088313724329055
KYQDVYVEL	9	Unmodified	_KYQDVYVEL_					0	0	0		nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;TRIOBP|p.S2318L|1|0.67|ENSG00000100106|chr22:37772617-37772617|C/T|missense_variant	nc|ENSG00000100106|Q9H2D6-2|TRIOBP	nc|ENSG00000100106|Q9H2D6-2|TRIOBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7994995117188	2	578.797872	1155.58119	0.2219	0.00012844	4.1146	0.0023815	4.3365	0.00251	578.8008313706384	51.848	0.81818	51.848	51.536	52.354	0					64	29	3	0	0	0	0.011693	2	12187	12171;12187		76.825	19.103	1	877150			21389	1534	11857	11858	27473;27474	27474					0.009622885492944988
KYQDVYVEL	9	Unmodified	_KYQDVYVEL_					0	0	0		nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;TRIOBP|p.S2318L|1|0.67|ENSG00000100106|chr22:37772617-37772617|C/T|missense_variant	nc|ENSG00000100106|Q9H2D6-2|TRIOBP	nc|ENSG00000100106|Q9H2D6-2|TRIOBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.7974243164062	2	578.797872	1155.58119	0.34329	0.0001987	-0.80379	-0.00046523	-0.4605	-0.00026654	578.7975317712751	51.994	0.3836	52.045	51.926	52.309	0.050571					34	13	3	0	0	0	0.053988	1	12165	12165		51.415	1.8609	1	1271300			21390	1534	11857	11858	27475	27475					0.009622885492944988
KYQEEFEHF	9	Unmodified	_KYQEEFEHF_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.7827758789062	2	628.782753	1255.55095	-0.0043706	-2.7482E-06	0.16769	0.00010544	0.16332	0.00010269	628.7827272553062	39.157	0.82841	39.157	38.816	39.644	0					66	29	3	0	0	0	2.6179E-07	3	8236	8183;8236;8285		187.3	187.3	1	941120			21391	1024	11858	11859	27476;27477;27478	27477					-0.06660070115890449
KYQEEFEHF	9	Unmodified	_KYQEEFEHF_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.5241394042969	3	419.524261	1255.55095	-0.4067	-0.00017062	-0.0064379	-2.7009E-06	-0.41314	-0.00017332	419.5242710604123	39.161	0.96103	39.161	38.816	39.777	0					98	34	4	0	0	0	0.0048951	3	8259	8207;8259;8307		87.258	53.437	1	1187600			21392	1024	11858	11859	27479;27480;27481	27480					-0.06660070115890449
KYQEEFEHF	9	Unmodified	_KYQEEFEHF_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.5240783691406	3	419.524261	1255.55095	-0.038952	-1.6341E-05	-0.2786	-0.00011688	-0.31755	-0.00013322	419.52410303491376	39.007	0.82629	39.099	38.836	39.662	0.09267					86	29	4	0	0	0	0.003673	3	8217	8164;8217;8271		96.936	66.232	1	1729800			21393	1024	11858	11859	27482;27483;27484	27483					-0.06660070115890449
KYQEEFEHF	9	Unmodified	_KYQEEFEHF_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	628.7828979492188	2	628.782753	1255.55095	0.004163	2.6176E-06	0.088234	5.548E-05	0.092397	5.8098E-05	628.7827800737251	38.98	0.74119	39.073	38.836	39.577	0.09267					63	26	3	0	0	0	2.5334E-11	3	8222	8167;8222;8272		216.57	159.32	1	1200100			21394	1024	11858	11859	27485;27486;27487	27486					-0.06660070115890449
KYQEEFEHF	9	Unmodified	_KYQEEFEHF_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.5241394042969	3	419.524261	1255.55095	0.23167	9.719E-05	-0.58705	-0.00024628	-0.35538	-0.00014909	419.52400252915845	39.036	0.83942	39.136	38.81	39.65	0.099407					86	29	4	0	0	0	0.0048951	3	8212	8164;8212;8279		87.258	59.077	1	1440400			21395	1024	11858	11859	27488;27489;27490	27489					-0.06660070115890449
KYQEEFEHF	9	Unmodified	_KYQEEFEHF_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.7828369140625	2	628.782753	1255.55095	0.41408	0.00026037	-0.33142	-0.00020839	0.08267	5.1981E-05	628.7824414839631	39.075	0.64158	39.175	38.869	39.511	0.099407					64	22	4	0	0	0	6.4322E-11	3	8172	8172;8219;8280		208.15	162.41	1	1039400			21396	1024	11858	11859	27491;27492;27493	27491					-0.06660070115890449
KYQELQVLF	9	Unmodified	_KYQELQVLF_					0	0	0		ENST00000543590.1_1_12:123355407-123355842:-|nuORF;ENSG00000139722|ENST00000267202|VPS37B	ENST00000543590.1_1_12:123355407-123355842:-|nuORF	ENST00000543590.1_1_12:123355407-123355842:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3240356445312	2	584.324057	1166.63356	0.35437	0.00020707	0.20626	0.00012052	0.56063	0.00032759	584.3241736753697	63.204	1.3874	63.204	62.718	64.105	0					106	50	4	0	0	0	0.0046246	2	15628	15628;15682		89.401	37.132	1	3100900			21397	4262	11859	11860	27494;27495	27494					0.05690871682895704
KYQELQVLF	9	Unmodified	_KYQELQVLF_					0	0	0		ENST00000543590.1_1_12:123355407-123355842:-|nuORF;ENSG00000139722|ENST00000267202|VPS37B	ENST00000543590.1_1_12:123355407-123355842:-|nuORF	ENST00000543590.1_1_12:123355407-123355842:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.323974609375	2	584.324057	1166.63356	0.33846	0.00019777	-0.018879	-1.1031E-05	0.31958	0.00018674	584.3239142327557	63.056	1.164	63.152	62.905	64.069	0.095726					91	41	4	0	0	0	0.015924	2	15578	15578;15624		70.332	18.064	1	2912600			21398	4262	11859	11860	27496;27497	27496					0.05690871682895704
KYQELQVLF	9	Unmodified	_KYQELQVLF_					0	0	0		ENST00000543590.1_1_12:123355407-123355842:-|nuORF;ENSG00000139722|ENST00000267202|VPS37B	ENST00000543590.1_1_12:123355407-123355842:-|nuORF	ENST00000543590.1_1_12:123355407-123355842:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3237915039062	2	584.324057	1166.63356	0.38743	0.00022639	-0.015615	-9.1243E-06	0.37182	0.00021726	584.323924660127	63.225	1.2914	63.217	62.913	64.204	-0.0085526					107	46	4	0	0	0	0.0073901	2	15618	15618;15667		83.429	31.16	1	3059900			21399	4262	11859	11860	27498;27499	27498					0.05690871682895704
KYQEYTNEL	9	Unmodified	_KYQEYTNEL_					0	0	0		ENSG00000183735|ENST00000331710|TBK1;ENST00000545392.1_1_12:64890804-64891535:+|nuORF	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.790771484375	2	594.282586	1186.55062	0.89541	0.00053213	-1.2925	-0.00076811	-0.39709	-0.00023598	594.2816270573866	37.375	0.29555	37.375	37.181	37.477	0					22	10	3	0	0	0	0.14808	1	7716	7716		46.022	19.754	1	573190			21400	7396	11860	11861	27500	27500					-0.0351948983575312
KYQEYTNEL	9	Unmodified	_KYQEYTNEL_					0	0	0		ENSG00000183735|ENST00000331710|TBK1;ENST00000545392.1_1_12:64890804-64891535:+|nuORF	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.7907104492188	2	594.282586	1186.55062	0.52252	0.00031053	-0.77073	-0.00045803	-0.24821	-0.00014751	594.2820286567587	37.282	0.35393	37.369	37.117	37.471	0.08741					28	12	3	0	0	0	0.23175	1	7692	7692		23.801	8.5526	1	593710			21401	7396	11860	11861	27501	27501					-0.0351948983575312
KYQEYTNEL	9	Unmodified	_KYQEYTNEL_					0	0	0		ENSG00000183735|ENST00000331710|TBK1;ENST00000545392.1_1_12:64890804-64891535:+|nuORF	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.790771484375	2	594.282586	1186.55062	0.55504	0.00032985	-2.0052	-0.0011916	-1.4501	-0.00086179	594.2806923976186	37.244	0.57555	37.337	36.872	37.448	0.093018					37	20	4	0	0	0	0.21113	1	7669	7669		29.437	9.0226	1	692080			21402	7396	11860	11861	27502	27502					-0.0351948983575312
KYQGVTQGF	9	Unmodified	_KYQGVTQGF_					0	0	0		ENSG00000162923|ENST00000414423|WDR26;ENST00000479727.1_1_1:224585697-224586694:-|nuORF;ENST00000486652.5_1_1:224577539-224589708:-|nuORF;nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26	ENSG00000162923|ENST00000414423|WDR26	ENSG00000162923|ENST00000414423|WDR26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.26416015625	2	514.263999	1026.51345	-0.63973	-0.00032899	0.86685	0.00044579	0.22712	0.0001168	514.2643359620289	34.587	0.53284	34.587	34.306	34.839	0					38	18	3	0	0	0	0.12056	1	6830	6830		51.415	19.11	1	213420			21403	5630	11861	11862	27503	27503					0.0012488340912568674
KYQGVTQGF	9	Unmodified	_KYQGVTQGF_					0	0	0		ENSG00000162923|ENST00000414423|WDR26;ENST00000479727.1_1_1:224585697-224586694:-|nuORF;ENST00000486652.5_1_1:224577539-224589708:-|nuORF;nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26	ENSG00000162923|ENST00000414423|WDR26	ENSG00000162923|ENST00000414423|WDR26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2642822265625	2	514.263999	1026.51345	-0.78657	-0.0004045	1.1461	0.00058938	0.3595	0.00018488	514.2642622397086	34.493	0.54402	34.568	34.244	34.788	0.075302					48	19	3	0	0	0	0.053988	1	6804	6804		51.415	28.679	1	222280			21404	5630	11861	11862	27504	27504					0.0012488340912568674
KYQGVTQGF	9	Unmodified	_KYQGVTQGF_					0	0	0		ENSG00000162923|ENST00000414423|WDR26;ENST00000479727.1_1_1:224585697-224586694:-|nuORF;ENST00000486652.5_1_1:224577539-224589708:-|nuORF;nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26	ENSG00000162923|ENST00000414423|WDR26	ENSG00000162923|ENST00000414423|WDR26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.264404296875	2	514.263999	1026.51345	-0.22072	-0.00011351	0.10469	5.3839E-05	-0.11603	-5.967E-05	514.2640877128082	34.384	0.50915	34.461	34.22	34.729	0.077377					30	17	2	0	0	0	0.053988	1	6767	6767		51.415	32.158	1	258310			21405	5630	11861	11862	27505	27505					0.0012488340912568674
KYQHLKAEF	9	Unmodified	_KYQHLKAEF_					0	0	0		EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant;EEA1|p.N1334Tfs*12|1|0.34|ENSG00000102189|chr12:92777556-92777556|T/-|frameshift_variant;ENSG00000102189|ENST00000322349|EEA1	EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant	EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3140258789062	2	582.314023	1162.61349	0.24245	0.00014118	-0.42056	-0.0002449	-0.17811	-0.00010372	582.3137631806947	24.545	0.65598	24.545	24.134	24.79	0					39	20	3	0	0	0	0.26278	1	3746	3746		14.405	8.6735	1	150540			21406	279	11862	11863	27506	27506					0.03869120742933774
KYQHLKAEF	9	Unmodified	_KYQHLKAEF_					0	0	0		EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant;EEA1|p.N1334Tfs*12|1|0.34|ENSG00000102189|chr12:92777556-92777556|T/-|frameshift_variant;ENSG00000102189|ENST00000322349|EEA1	EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant	EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.31396484375	2	582.314023	1162.61349	0.25844	0.00015049	0.074528	4.3399E-05	0.33296	0.00019389	582.313869794462	24.665	0.52285	24.609	24.315	24.837	-0.055931					37	17	3	0	0	0	0.13296	1	3831	3831		33.445	21.204	1	181390			21407	279	11862	11863	27507	27507					0.03869120742933774
KYQHLKAEF	9	Unmodified	_KYQHLKAEF_					0	0	0		EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant;EEA1|p.N1334Tfs*12|1|0.34|ENSG00000102189|chr12:92777556-92777556|T/-|frameshift_variant;ENSG00000102189|ENST00000322349|EEA1	EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant	EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.3140869140625	2	582.314023	1162.61349	0.087939	5.1208E-05	0.23572	0.00013727	0.32366	0.00018847	582.3141630674986	24.646	0.48912	24.615	24.373	24.862	-0.031408					35	16	3	0	0	0	0.073988	1	3810	3810		43.982	30.076	1	137250			21408	279	11862	11863	27508	27508					0.03869120742933774
KYQIINEEF	9	Unmodified	_KYQIINEEF_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.3035278320312	2	592.303321	1182.59209	0.47861	0.00028348	0.025539	1.5127E-05	0.50415	0.00029861	592.3032832605471	52.512	1.2611	52.512	52.18	53.441	0					131	45	4	0	0	0	1.1647E-32	5	12334	12287;12334;12384;12435;12488		257.82	158.02	1	29450000			21409	5727	11863	11864	27509;27510;27511;27512;27513	27510					0.008096909235518979
KYQIINEEF	9	Unmodified	_KYQIINEEF_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.3036499023438	2	592.303321	1182.59209	0.49615	0.00029387	0.10815	6.4057E-05	0.6043	0.00035793	592.3033163796549	52.443	1.3913	52.494	52.06	53.451	0.050571					168	50	5	0	0	0	4.8913000000000006E-24	6	12298	12253;12298;12342;12394;12449;12501		240.41	155.14	1	23406000			21410	5727	11863	11864	27514;27515;27516;27517;27518;27519	27515					0.008096909235518979
KYQIINEEF	9	Unmodified	_KYQIINEEF_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.2921752929688	2	592.303321	1182.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.638	1	54.701	54.201	55.201	0.063202								0	0	0	0.1768	1	12990	12990		28.495	10.348	1				21411	5727	11863	11864	27520	27520					0.008096909235518979
KYQIINEEF	9	Unmodified	_KYQIINEEF_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.3035888671875	2	592.303321	1182.59209	0.32804	0.0001943	0.17192	0.00010183	0.49996	0.00029613	592.3033687308281	52.657	1.2617	52.656	52.305	53.566	-0.00080872					144	45	5	0	0	0	1.1647E-32	5	12370	12320;12370;12418;12469;12524		257.82	158.02	1	27218000			21412	5727	11863	11864	27521;27522;27523;27524;27525	27522					0.008096909235518979
KYQKGFSLW	9	Unmodified	_KYQKGFSLW_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.8117065429688	2	578.811116	1155.60768	0.55303	0.0003201	-0.094825	-5.4886E-05	0.4582	0.00026521	578.8109872770958	47.19	0.81081	47.19	46.961	47.771	0					68	28	3	0	0	0	4.3881E-05	2	10688	10688;10740		149.91	104.17	1	1642700			21413	858	11864	11865	27526;27527	27526					0.03610022231282528
KYQKGFSLW	9	Unmodified	_KYQKGFSLW_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.8323974609375	2	578.811116	1155.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.549	1	52.549	52.049	53.049	0								0	0	0	0.14907	1	12345	12345		34.932	2.8946	1				21414	858	11864	11865	27528	27528					0.03610022231282528
KYQKGFSLW	9	Unmodified	_KYQKGFSLW_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.78564453125	2	578.811116	1155.60768	0.27565	0.00015955	-1.1059	-0.00064013	-0.83029	-0.00048058	578.8102938749188	52.343	0.66928	52.343	52.098	52.767	0					35	23	2	0	0	0	0.22143	1	12376	12376		24.991	12.459	1	696110			21415	858	11864	11865	27529	27529					0.03610022231282528
KYQKGFSLW	9	Unmodified	_KYQKGFSLW_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.8115844726562	2	578.811116	1155.60768	0.33061	0.00019136	0.29212	0.00016908	0.62274	0.00036045	578.8111820572263	46.981	0.96295	47.033	46.764	47.727	0.052574					69	35	3	0	0	0	0.00045155	2	10670	10625;10670		129.77	91.798	1	1924700			21416	858	11864	11865	27530;27531	27531					0.03610022231282528
KYQKGFSLW	9	Unmodified	_KYQKGFSLW_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.8324584960938	2	578.811116	1155.60768	0.36911	0.00021364	-0.98301	-0.00056898	-0.61391	-0.00035534	578.8110497081939	52.228	0.87609	52.279	52.06	52.936	0.050571					70	31	3	0	0	0	0.18479	1	12300	12300		34.932	14.518	1	664590			21417	858	11864	11865	27532	27532					0.03610022231282528
KYQKGFSLW	9	Unmodified	_KYQKGFSLW_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.8113403320312	2	578.811116	1155.60768	0.84476	0.00048896	-0.45707	-0.00026456	0.3877	0.0002244	578.8107967319463	47.06	0.98398	47.114	46.851	47.835	0.054371					68	35	3	0	0	0	0.00019464	1	10647	10647		133.05	93.095	1	1937300			21418	858	11864	11865	27533	27533					0.03610022231282528
KYQKGFSLW	9	Unmodified	_KYQKGFSLW_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.7855834960938	2	578.811116	1155.60768	0.18113	0.00010484	-0.81464	-0.00047152	-0.63351	-0.00036669	578.811064128379	52.584	0.76001	52.583	52.305	53.065	-0.00080872					63	27	3	0	0	0	0.090256	1	12413	12413		49.554	31.408	1	669090			21419	858	11864	11865	27534	27534					0.03610022231282528
KYQPRIAVF	9	Unmodified	_KYQPRIAVF_					0	0	0		ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.326904296875	2	561.326934	1120.63931	0.13845	7.7718E-05	-0.058252	-3.2699E-05	0.080201	4.5019E-05	561.326869255546	42.719	1.0319	42.719	42.383	43.414	0					100	37	4	0	0	0	0.0011817	2	9324	9277;9324		120.45	88.145	1	4329100			21420	4234	11865	11866	27535;27536	27536					0.08382014985227215
KYQPRIAVF	9	Unmodified	_KYQPRIAVF_					0	0	0		ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3270874023438	2	561.326934	1120.63931	0.25116	0.00014098	-0.059488	-3.3392E-05	0.19167	0.00010759	561.3268761696893	42.464	1.061	42.55	42.238	43.299	0.085201					112	38	5	0	0	0	0.0011817	2	9218	9218;9260		120.45	88.145	1	4045000			21421	4234	11865	11866	27537;27538	27537					0.08382014985227215
KYQPRIAVF	9	Unmodified	_KYQPRIAVF_					0	0	0		ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3270874023438	2	561.326934	1120.63931	0.21467	0.0001205	0.022184	1.2453E-05	0.23685	0.00013295	561.3269409020638	42.41	0.99519	42.501	42.203	43.198	0.091362					98	35	4	0	0	0	0.00014409	2	9241	9192;9241		133.7	97.658	1	4455800			21422	4234	11865	11866	27539;27540	27540					0.08382014985227215
KYQRILERL	9	Unmodified	_KYQRILERL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;OPA1|p.R842Ifs*2|1|0.3|ENSG00000198836|chr3:193664903-193664904|-/TATA|frameshift_variant	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.8702392578125	2	609.869497	1217.72444	0.65563	0.00039985	0.087214	5.3189E-05	0.74285	0.00045304	609.8695333502337	34.069	0.83501	34.069	33.753	34.588	0					65	29	4	0	0	0	0.037019	1	6661	6661		57.722	3.8892	1	701680			21423	8137	11866	11867	27541	27541					0.12428760451052767
KYQRILERL	9	Unmodified	_KYQRILERL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;OPA1|p.R842Ifs*2|1|0.3|ENSG00000198836|chr3:193664903-193664904|-/TATA|frameshift_variant	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.91571044921875	3	406.915423	1217.72444	0.1166	4.7446E-05	0.10433	4.2454E-05	0.22093	8.99E-05	406.9155603471023	34.064	1.738	34.064	33.728	35.466	0					187	62	6	0	0	0	0.0073901	2	6669	6669;6714		68.76	37.124	1	6375300			21424	8137	11866	11867	27542;27543	27542					0.12428760451052767
KYQRILERL	9	Unmodified	_KYQRILERL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;OPA1|p.R842Ifs*2|1|0.3|ENSG00000198836|chr3:193664903-193664904|-/TATA|frameshift_variant	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.8700561523438	2	609.869497	1217.72444	0.90391	0.00055127	-0.11654	-7.1076E-05	0.78737	0.00048019	609.8693341912756	33.854	0.72403	33.92	33.65	34.374	0.06636					59	25	3	0	0	0	0.058995	1	6591	6591		49.554	3.8547	1	663720			21425	8137	11866	11867	27544	27544					0.12428760451052767
KYQRILERL	9	Unmodified	_KYQRILERL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;OPA1|p.R842Ifs*2|1|0.3|ENSG00000198836|chr3:193664903-193664904|-/TATA|frameshift_variant	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.9157409667969	3	406.915423	1217.72444	0.38994	0.00015867	-0.07728	-3.1446E-05	0.31266	0.00012722	406.9154783957179	33.863	1.6068	33.93	33.566	35.173	0.06636					176	57	5	0	0	0	0.0041491	2	6615	6615;6663		77.049	45.413	1	5514600			21426	8137	11866	11867	27545;27546	27545					0.12428760451052767
KYQRILERL	9	Unmodified	_KYQRILERL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;OPA1|p.R842Ifs*2|1|0.3|ENSG00000198836|chr3:193664903-193664904|-/TATA|frameshift_variant	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.8699340820312	2	609.869497	1217.72444	0.15234	9.2909E-05	0.39092	0.00023841	0.54327	0.00033132	609.8696905153607	33.915	0.66855	33.981	33.711	34.38	0.066704					60	23	3	0	0	0	0.014888	1	6613	6613		71.922	18.089	1	704380			21427	8137	11866	11867	27547	27547					0.12428760451052767
KYQRILERL	9	Unmodified	_KYQRILERL_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;OPA1|p.R842Ifs*2|1|0.3|ENSG00000198836|chr3:193664903-193664904|-/TATA|frameshift_variant	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.91571044921875	3	406.915423	1217.72444	-0.17919	-7.2916E-05	0.27396	0.00011148	0.094763	3.856E-05	406.91563191365	33.893	1.5232	33.96	33.633	35.156	0.0667					168	54	5	0	0	0	0.0073901	2	6618	6618;6668		68.76	37.124	1	6116400			21428	8137	11866	11867	27548;27549	27548					0.12428760451052767
KYQYWAVVF	9	Unmodified	_KYQYWAVVF_					0	0	0		ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.3129272460938	2	602.313492	1202.61243	0.49887	0.00030048	-2.4091	-0.001451	-1.9102	-0.0011505	602.3125090876609	70.877	0.46436	70.877	70.605	71.07	0					29	16	3	0	0	0	0.22188	1	18007	18007		20.454	11.071	1	206800			21429	3912	11867	11868	27550	27550					0.019229063740112906
KYQYWAVVF	9	Unmodified	_KYQYWAVVF_					0	0	0		ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.313232421875	2	602.313492	1202.61243	0.51631	0.00031098	-1.642	-0.00098902	-1.1257	-0.00067804	602.312747508627	70.837	0.32652	70.898	70.69	71.017	0.060783					27	11	3	0	0	0	0.14076	1	17979	17979		32.305	22.922	1	237620			21430	3912	11867	11868	27551	27551					0.019229063740112906
KYRILLFFWSL	11	Unmodified	_KYRILLFFWSL_					0	0	0			REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.9588928222656	3	495.958741	1484.85439	0.36797	0.0001825	0.098669	4.8936E-05	0.46664	0.00023143	495.95873421909374	93.09	2.4977	93.179	91.597	94.095	0.089195					652	192	4	0	0	0	0.48212	2	24487	24487;24763		0.45452	0.45452	1	2395400	+		21431	18645	11868	11869	27552;27553	27552					0.13135936730191133
KYRNKRRNEK	10	Unmodified	_KYRNKRRNEK_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2921142578125	3	464.604131	1390.79056	-0.36674	-0.00017039	-0.25709	-0.00011944	-0.62383	-0.00028983	464.60380657206645	12.705	0.31863	12.705	12.555	12.874	0					21	10	4	0	0	0	0.32175	1	162	162		0.13989	0	1	50191	+		21432	17073	11869	11870	27554	27554					0.11079969345769314
KYRNKRRNEK	10	Unmodified	_KYRNKRRNEK_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	464.604131	1390.79056	-0.29212	-0.00013572	-0.032617	-1.5154E-05	-0.32474	-0.00015087	464.60396055188613	12.729	0.23804	12.63	12.49	12.729	-0.099291	-0.038363	0.00015093	NaN	0.13989	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44940	+		21433	17073	11869	11870							0.11079969345769314
KYRPLFDYF	9	Unmodified	_KYRPLFDYF_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.8248291015625	2	624.824224	1247.63389	0.15406	9.6262E-05	0.37331	0.00023325	0.52738	0.00032952	624.8243008794533	61.315	0.57531	61.315	61.128	61.703	0					49	21	3	0	0	0	0.0032746	1	15051	15051		111.29	80.651	1	627140			21434	7846	11870	11871	27555	27555					0.01998291402742325
KYRPLFDYF	9	Unmodified	_KYRPLFDYF_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.8243408203125	2	624.824224	1247.63389	-0.26176	-0.00016356	0.56209	0.00035121	0.30033	0.00018765	624.8244466967406	61.337	0.75459	61.434	61.169	61.924	0.096985					51	27	3	0	0	0	0.008707	1	15071	15071		88.954	52.827	1	637870			21435	7846	11870	11871	27556	27556					0.01998291402742325
KYRPLFDYF	9	Unmodified	_KYRPLFDYF_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.823974609375	2	624.824224	1247.63389	-0.056554	-3.5336E-05	0.45091	0.00028174	0.39435	0.0002464	624.8244501525916	61.374	0.70638	61.365	61.104	61.81	-0.0094566					59	25	3	0	0	0	0.0066776	1	15045	15045		92.653	65.77	1	925900			21436	7846	11870	11871	27557	27557					0.01998291402742325
KYRPLFDYF	9	Unmodified	_KYRPLFDYF_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.8853759765625	3	416.885241	1247.63389	-0.058393	-2.4343E-05	-0.14341	-5.9784E-05	-0.2018	-8.4128E-05	416.8851753742868	61.334	0.87398	61.324	61.104	61.978	-0.0094566					68	31	3	0	0	0	0.33112	1	15050	15050		4.1895	0	1	1151300			21437	7846	11870	11871	27558	27558					0.01998291402742325
KYRRKQTYQLW	11	Unmodified	_KYRRKQTYQLW_					0	0	0			REV__nc|ENSG00000198089|A8K8P3-5|SFI1	REV__nc|ENSG00000198089|A8K8P3-5|SFI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2782592773438	3	523.959803	1568.85758	-0.54958	-0.00028796	-1.3836	-0.00072496	-1.9332	-0.0010129	523.9594136695367	35.078	0.52049	35.153	34.933	35.454	0.075306					41	18	3	0	0	0	0.46842	1	6976	6976		2.2527	0.92309	1	385560	+		21438	18797	11871	11872	27559	27559					0.09590579836890356
KYRRKQTYQLW	11	Unmodified	_KYRRKQTYQLW_					0	0	0			REV__nc|ENSG00000198089|A8K8P3-5|SFI1	REV__nc|ENSG00000198089|A8K8P3-5|SFI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2784423828125	3	523.959803	1568.85758	-0.54526	-0.00028569	-1.129	-0.00059155	-1.6743	-0.00087725	523.9594932601119	35.039	0.5233	35.116	34.866	35.39	0.077377					45	18	4	0	0	0	0.45822	1	6956	6956		3.5927	2.263	1	322610	+		21439	18797	11871	11872	27560	27560					0.09590579836890356
KYRRKQTYQLW	11	Unmodified	_KYRRKQTYQLW_					0	0	0			REV__nc|ENSG00000198089|A8K8P3-5|SFI1	REV__nc|ENSG00000198089|A8K8P3-5|SFI1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	523.959803	1568.85758	-0.51789	-0.00027136	-1.5708	-0.00082302	-2.0887	-0.0010944	523.9593466656523	35.114	0.57338	35.114	34.892	35.466	0	-0.013994	-0.00039412	NaN	3.5927	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330950	+		21440	18797	11871	11872							0.09590579836890356
KYRRYHPLF	9	Unmodified	_KYRRYHPLF_					0	0	0		nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF	nc|ENSG00000186635|Q96P48-2|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.24017333984375	3	427.24013	1278.69856	-0.28588	-0.00012214	-0.0029992	-1.2814E-06	-0.28888	-0.00012342	427.2401097378074	27.515	2.5153	27.515	27.035	29.551	0					225	88	5	0	0	0	0.16853	1	4664	4664		38.176	25.935	1	1948700			21441	7631	11872	11873	27561	27561					0.07035910999411499
KYRRYHPLF	9	Unmodified	_KYRRYHPLF_					0	0	0		nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF	nc|ENSG00000186635|Q96P48-2|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.239990234375	3	427.24013	1278.69856	-0.34825	-0.00014879	-0.069643	-2.9754E-05	-0.41789	-0.00017854	427.2401060170298	27.55	2.3681	27.528	27.188	29.556	-0.021412					221	83	4	0	0	0	0.13748	2	4725	4725;4905		32.786	20.545	1	2298900			21442	7631	11872	11873	27562;27563	27562					0.07035910999411499
KYRRYHPLF	9	Unmodified	_KYRRYHPLF_					0	0	0		nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF	nc|ENSG00000186635|Q96P48-2|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.23992919921875	3	427.24013	1278.69856	-0.39343	-0.00016809	-0.080956	-3.4587E-05	-0.47438	-0.00020267	427.24008650862226	27.655	1.8245	27.643	27.29	29.115	-0.01156					191	64	5	0	0	0	0.10059	2	4717	4717;4866		38.176	38.176	1	2657300			21443	7631	11872	11873	27564;27565	27564					0.07035910999411499
KYRRYRIWKRR	11	Unmodified	_KYRRYRIWKRR_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.30712890625	3	561.00597	1679.99608	-0.029786	-1.671E-05	-1.6897	-0.00094795	-1.7195	-0.00096466	561.0049425548344	97.545	0.16077	97.545	97.424	97.585	0					24	17	2	0	0	0	0.33352	1	26096	26096		0	0	1	84633	+		21444	18991	11873	11874	27566	27566					0.1832816759583693
KYRWSGRRS	9	Unmodified	_KYRWSGRRS_					0	0	0			REV__ENST00000565396.5_1_16:2050390-2052694:-|nuORF	REV__ENST00000565396.5_1_16:2050390-2052694:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.3253784179688	2	598.325788	1194.63702	0.35999	0.00021539	-1.1758	-0.00070353	-0.81583	-0.00048813	598.3251684359157	96.466	0.5689	96.536	96.252	96.821	0.070465					106	57	3	0	0	0	0.33508	1	25760	25760		3.5965	1.7523	1	113840	+		21445	17422	11874	11875	27567	27567					0.047489793001204816
KYRWSGRRS	9	Unmodified	_KYRWSGRRS_					0	0	0			REV__ENST00000565396.5_1_16:2050390-2052694:-|nuORF	REV__ENST00000565396.5_1_16:2050390-2052694:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.3251953125	2	598.325788	1194.63702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.08	1	100.12	99.624	100.62	0.038994								0	0	0	0.25858	1	26756	26756		3.5965	0.31518	1		+		21446	17422	11874	11875	27568	27568					0.047489793001204816
KYRWSGRRS	9	Unmodified	_KYRWSGRRS_					0	0	0			REV__ENST00000565396.5_1_16:2050390-2052694:-|nuORF	REV__ENST00000565396.5_1_16:2050390-2052694:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	598.325788	1194.63702	0.42158	0.00025224	-1.4162	-0.00084737	-0.99466	-0.00059513	598.3251513417945	96.554	0.5172	96.548	96.27	96.788	-0.0055466	-0.010036	-0.00014391	NaN	3.5965	99	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128450	+		21447	17422	11874	11875							0.047489793001204816
KYSDITIMF	9	Oxidation (M)	_KYSDITIM(Oxidation (M))F_		KYSDITIM(1)F		KYSDITIM(160)F	0	0	1		ENSG00000130005|ENST00000252288|GAMT;nc|ENSG00000130005|Q14353-2|GAMT	ENSG00000130005|ENST00000252288|GAMT	ENSG00000130005|ENST00000252288|GAMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2821044921875	2	567.281	1132.54745	0.2076	0.00011777	0.83789	0.00047532	1.0455	0.00059308	567.2816343037315	59.117	1.5083	59.117	58.468	59.977	0					142	52	7	0	0	0	5.7257E-07	2	14367	14326;14367		157.8	111.77	1	17755000			21448	3445	11875	11876	27569;27570	27570		437			-0.013524562141356
KYSDITIMF	9	Oxidation (M)	_KYSDITIM(Oxidation (M))F_		KYSDITIM(1)F		KYSDITIM(170)F	0	0	1		ENSG00000130005|ENST00000252288|GAMT;nc|ENSG00000130005|Q14353-2|GAMT	ENSG00000130005|ENST00000252288|GAMT	ENSG00000130005|ENST00000252288|GAMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2811279296875	2	567.281	1132.54745	0.39136	0.00022201	0.61273	0.00034759	1.0041	0.0005696	567.2815094077895	58.95	1.5972	59.041	58.446	60.043	0.091301					148	56	5	0	0	0	2.32E-07	2	14276	14276;14325		171.09	118.82	1	19757000			21449	3445	11875	11876	27571;27572	27571		437			-0.013524562141356
KYSDITIMF	9	Oxidation (M)	_KYSDITIM(Oxidation (M))F_		KYSDITIM(1)F		KYSDITIM(150)F	0	0	1		ENSG00000130005|ENST00000252288|GAMT;nc|ENSG00000130005|Q14353-2|GAMT	ENSG00000130005|ENST00000252288|GAMT	ENSG00000130005|ENST00000252288|GAMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2815551757812	2	567.281	1132.54745	0.35889	0.00020359	0.68771	0.00039013	1.0466	0.00059372	567.2814741700466	59.11	1.8787	59.096	58.496	60.375	-0.014267					153	66	4	0	0	0	7.3453E-05	1	14335	14335		145.13	99.109	1	21888000			21450	3445	11875	11876	27573	27573		437			-0.013524562141356
KYSEVFEAI	9	Unmodified	_KYSEVFEAI_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3	ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.27978515625	2	543.279315	1084.54408	0.71675	0.00038939	-0.40778	-0.00022154	0.30897	0.00016786	543.2792956747923	53.925	1.3747	53.925	53.386	54.761	0					151	50	5	0	0	0	0.00019464	4	12784	12733;12784;12833;12884		133.05	70.479	1	11856000			21451	1678;941	11876	11877	27574;27575;27576;27577	27575					0.005186170035358373
KYSEVFEAI	9	Unmodified	_KYSEVFEAI_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3	ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2797241210938	2	543.279315	1084.54408	0.5512	0.00029946	-0.17862	-9.7042E-05	0.37258	0.00020241	543.279408542264	53.85	1.3641	53.906	53.379	54.743	0.056255					157	51	5	0	0	0	0.0010968	4	12798	12702;12746;12798;12848		121.53	55.077	1	13001000			21452	1678;941	11876	11877	27578;27579;27580;27581	27580					0.005186170035358373
KYSEVFEAI	9	Unmodified	_KYSEVFEAI_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3	ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2797241210938	2	543.279315	1084.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.148	1	54.132	53.632	54.632	-0.015923								0	0	0	8.5364E-07	1	12832	12832		133.05	60.084	1				21453	1678;941	11876	11877	27582	27582					0.005186170035358373
KYSEVFEAI	9	Unmodified	_KYSEVFEAI_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF;ENSG00000101266|ENST00000217244|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3	ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2796020507812	2	543.279315	1084.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.318	1	54.302	53.802	54.802	-0.015923								0	0	0	0.0002465	1	12885	12885		110.55	47.98	1				21454	1678;941	11876	11877	27583	27583					0.005186170035358373
KYSFLPYQL	9	Unmodified	_KYSFLPYQL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.8135986328125	2	579.813325	1157.6121	0.27725	0.00016076	0.12547	7.2748E-05	0.40272	0.0002335	579.8132450087397	67.768	0.58824	67.768	67.536	68.124	0					55	20	4	0	0	0	0.027957	1	17007	17007		61.09	24.584	1	1007800			21455	1834	11877	11878	27584	27584					0.039594866541847296
KYSFLPYQL	9	Unmodified	_KYSFLPYQL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.813720703125	2	579.813325	1157.6121	0.45863	0.00026592	-0.15909	-9.2243E-05	0.29953	0.00017367	579.8131032679626	67.636	0.62233	67.714	67.461	68.084	0.078041					52	21	3	0	0	0	0.027957	1	16971	16971		61.09	28.304	1	884580			21456	1834	11877	11878	27585	27585					0.039594866541847296
KYSFLPYQL	9	Unmodified	_KYSFLPYQL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8131103515625	2	579.813325	1157.6121	0.23648	0.00013711	0.080178	4.6488E-05	0.31666	0.0001836	579.8131595484439	67.764	0.70017	67.747	67.451	68.151	-0.016296					58	24	4	0	0	0	0.018042	1	16991	16991		67.081	35.812	1	1128800			21457	1834	11877	11878	27586	27586					0.039594866541847296
KYSGANGPLF	10	Unmodified	_KYSGANGPLF_					0	0	0			REV__ENSG00000197121|ENST00000354764|PGAP1	REV__ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2719116210938	2	527.271824	1052.5291	0.46657	0.00024601	-0.3964	-0.00020901	0.070175	3.7001E-05	527.2716573378153	67.899	0.53096	67.883	67.593	68.124	-0.016304					38	18	3	0	0	0	0.1715	1	17062	17062		36.127	2.0246	1	302140	+		21458	18711	11878	11879	27587	27587					0.004931699261760514
KYSGANGPLF	10	Unmodified	_KYSGANGPLF_					0	0	0			REV__ENSG00000197121|ENST00000354764|PGAP1	REV__ENSG00000197121|ENST00000354764|PGAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	527.271824	1052.5291	0.59056	0.00031138	-1.4574	-0.00076843	-0.86682	-0.00045705	527.2711448127837	67.644	0.69649	67.722	67.354	68.05	0.078041	-0.080422	-0.00064271	NaN	36.127	56	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321440	+		21459	18711	11878	11879							0.004931699261760514
KYSGANGPLF	10	Unmodified	_KYSGANGPLF_					0	0	0			REV__ENSG00000197121|ENST00000354764|PGAP1	REV__ENSG00000197121|ENST00000354764|PGAP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	527.271824	1052.5291	0.46657	0.00024601	-0.3964	-0.00020901	0.070175	3.7001E-05	527.2716573378153	67.899	0.53096	67.883	67.593	68.124	-0.016304	0.080422	0.00047613	NaN	36.127	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302140	+		21460	18711	11878	11879							0.004931699261760514
KYSGILMKDR	10	Unmodified	_KYSGILMKDR_					0	0	0		nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9;ENST00000482490.5_1_3:64536549-64672246:-|nuORF;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;nc|ENSG00000163638|Q9P2N4-2|ADAMTS9;ENST00000475557.5_1_3:64600969-64673333:-|nuORF	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.85107421875	3	404.225269	1209.65398	-0.43468	-0.00017571	0.38786	0.00015678	-0.046819	-1.8925E-05	404.22678105606786	12.971	0.32679	12.971	12.9	13.227	0					18	11	2	0	0	0	0.32146	1	314	314		0.50596	0	1	17261			21461	5713	11879	11880	27588	27588					0.057537190710490904
KYSHPVFFE	9	Unmodified	_KYSHPVFFE_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3;ENST00000487204.1_1_X:50085140-50094699:+|nuORF;nc|ENSG00000147082|Q8WWL7-2|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8005981445312	2	577.287474	1152.5604	0.25886	0.00014944	0.84953	0.00049043	1.1084	0.00063986	577.2873640666427	75.869	0.56667	75.923	75.594	76.161	0.053413					34	20	2	0	0	0	0.25706	1	19553	19553		6.7232	2.7788	1	174580			21462	4743	11880	11881	27589	27589					-0.00978257039696473
KYSHPVFFE	9	Unmodified	_KYSHPVFFE_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3;ENST00000487204.1_1_X:50085140-50094699:+|nuORF;nc|ENSG00000147082|Q8WWL7-2|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8009643554688	2	577.287474	1152.5604	0.23678	0.00013669	1.3153	0.00075929	1.5521	0.00089598	577.7900504673917	76.049	0.60181	76.018	75.588	76.189	-0.031487					33	21	2	0	0	0	0.25202	1	19567	19567		10.824	1.4408	1	283480			21463	4743	11880	11881	27590	27590					-0.00978257039696473
KYSKRFPEL	9	Unmodified	_KYSKRFPEL_					0	0	0		ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31	ENSG00000105618|ENST00000321030|PRPF31	ENSG00000105618|ENST00000321030|PRPF31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3296508789062	2	584.329673	1166.64479	0.46147	0.00026965	-0.51876	-0.00030313	-0.057294	-3.3478E-05	584.3293577269415	29.895	0.95491	29.895	29.3	30.255	0					71	33	3	0	0	0	0.093486	2	5401	5353;5401		39.213	24.808	1	242280			21464	1997	11881	11882	27591;27592	27592					0.06813693777030494
KYSKRFPEL	9	Unmodified	_KYSKRFPEL_					0	0	0		ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31	ENSG00000105618|ENST00000321030|PRPF31	ENSG00000105618|ENST00000321030|PRPF31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3297729492188	2	584.329673	1166.64479	0.3158	0.00018453	-0.25524	-0.00014915	0.06056	3.5387E-05	584.3295530042485	29.877	0.90062	29.889	29.302	30.202	0.012266					71	30	3	0	0	0	0.038291	2	5390	5341;5390		57.249	25.981	1	238720			21465	1997	11881	11882	27593;27594	27594					0.06813693777030494
KYSKRFPEL	9	Unmodified	_KYSKRFPEL_					0	0	0		ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31	ENSG00000105618|ENST00000321030|PRPF31	ENSG00000105618|ENST00000321030|PRPF31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3292236328125	2	584.329673	1166.64479	0.07295	4.2627E-05	-0.15079	-8.811E-05	-0.077839	-4.5483E-05	584.3295862991436	29.928	0.76041	29.941	29.507	30.267	0.013474					60	25	3	0	0	0	0.059067	1	5383	5383		49.527	24.536	1	240460			21466	1997	11881	11882	27595	27595					0.06813693777030494
KYSLIKGNF	9	Unmodified	_KYSLIKGNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.3067626953125	2	535.305667	1068.59678	0.14412	7.7149E-05	0.19695	0.00010543	0.34107	0.00018258	535.3066250694804	39.255	2.6756	39.255	38.765	41.441	0					335	97	6	0	0	0	8.5057E-24	10	8322	8232;8280;8296;8322;8364;8412;8461;8504;8558;8607		233.47	155.9	1	70743000			21467	4528	11882	11883	27596;27597;27598;27599;27600;27601;27602;27603;27604;27605	27599					0.06522619856991696
KYSLIKGNF	9	Unmodified	_KYSLIKGNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.3069458007812	2	535.305667	1068.59678	0.17431	9.3309E-05	0.15406	8.247E-05	0.32837	0.00017578	535.3065058684574	39.114	2.4077	39.207	38.81	41.218	0.09267					272	87	6	0	0	0	8.5057E-24	9	8247	8157;8206;8247;8290;8340;8384;8439;8491;8540		233.47	170.24	1	73373000			21468	4528	11882	11883	27606;27607;27608;27609;27610;27611;27612;27613;27614	27608					0.06522619856991696
KYSLIKGNF	9	Unmodified	_KYSLIKGNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.3056640625	2	535.305667	1068.59678	0.55612	0.00029769	-0.17185	-9.1995E-05	0.38426	0.0002057	535.3063954056917	39.141	2.5565	39.24	38.68	41.236	0.099407					300	92	5	0	0	0	4.608E-24	8	8159	8159;8209;8259;8309;8352;8403;8453;8506		240.95	171.85	1	80215000			21469	4528	11882	11883	27615;27616;27617;27618;27619;27620;27621;27622	27615					0.06522619856991696
KYSLVKNKI	9	Unmodified	_KYSLVKNKI_					0	0	0		ENSG00000188643|ENST00000368706|S100A16;ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENSG00000188643|ENST00000368706|S100A16	ENSG00000188643|ENST00000368706|S100A16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8423461914062	2	546.842416	1091.67028	0.38734	0.00021182	-0.10952	-5.9891E-05	0.27782	0.00015192	546.8421785488367	23.3	0.54857	23.213	22.967	23.515	-0.087608					46	19	3	0	0	0	0.0091837	1	3402	3402		80.676	44.549	1	263490			21470	7763	11883	11884	27623	27623					0.12811168299458586
KYSLVKNKI	9	Unmodified	_KYSLVKNKI_					0	0	0		ENSG00000188643|ENST00000368706|S100A16;ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENSG00000188643|ENST00000368706|S100A16	ENSG00000188643|ENST00000368706|S100A16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	546.842416	1091.67028	0.22601	0.00012359	0.027361	1.4962E-05	0.25337	0.00013855	546.8422816420854	23.191	0.54646	23.191	22.996	23.542	0	-0.035048	0.00010123	NaN	80.676	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261740			21471	7763	11883	11884							0.12811168299458586
KYSLVKNKI	9	Unmodified	_KYSLVKNKI_					0	0	0		ENSG00000188643|ENST00000368706|S100A16;ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENSG00000188643|ENST00000368706|S100A16	ENSG00000188643|ENST00000368706|S100A16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	546.842416	1091.67028	0.53155	0.00029068	-0.088479	-4.8384E-05	0.44308	0.00024229	546.8422453395258	23.319	0.55414	23.274	23.06	23.614	-0.044867	0.04814	-2.546E-05	NaN	80.676	50	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222140			21472	7763	11883	11884							0.12811168299458586
KYSNMEQSLF	10	Oxidation (M)	_KYSNM(Oxidation (M))EQSLF_		KYSNM(1)EQSLF		KYSNM(41)EQSLF	0	0	1		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	631.7902221679688	2	631.789721	1261.56489	0.35806	0.00022622	-0.30562	-0.00019309	0.052441	3.3132E-05	631.7896413163827	40.9	0.82123	40.993	40.637	41.459	0.09267					84	30	4	0	0	0	0.13386	3	8717	8717;8763;8813		40.725	18.067	1	1255400			21473	511	11884	11885	27624;27625;27626	27624		55			-0.055431606791216836
KYSNMEQSLF	10	Oxidation (M)	_KYSNM(Oxidation (M))EQSLF_		KYSNM(1)EQSLF		KYSNM(55)EQSLF	0	0	1		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.7899780273438	2	631.789721	1261.56489	0.2392	0.00015113	-0.0028566	-1.8047E-06	0.23635	0.00014932	631.7897115437921	40.841	0.73182	40.94	40.641	41.373	0.099407					81	26	4	0	0	0	0.067194	1	8764	8764		55.249	16.634	1	1193200			21474	511	11884	11885	27627	27627		55			-0.055431606791216836
KYSNVSILL	9	Unmodified	_KYSNVSILL_					0	0	0		ENST00000481652.1_1_1:114242829-114248598:-|nuORF;ENSG00000116793|ENST00000369604|PHTF1	ENST00000481652.1_1_1:114242829-114248598:-|nuORF	ENST00000481652.1_1_1:114242829-114248598:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.8056030273438	2	518.8055	1035.59645	0.639	0.00033152	-1.0024	-0.00052004	-0.36338	-0.00018853	518.8051334079411	54.713	0.59076	54.697	54.389	54.98	-0.015923					58	20	4	0	0	0	0.21538	1	13054	13054		26.268	0	1	788540			21475	2752	11885	11886	27628	27628					0.08007200137149084
KYSPFVVSF	9	Unmodified	_KYSPFVVSF_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2871704101562	2	537.286943	1072.55933	0.50994	0.00027398	0.58576	0.00031472	1.0957	0.00058871	537.2868285857111	64.816	2.4813	64.816	64.513	66.994	0					187	89	3	0	0	0	4.3881E-05	3	16136	16090;16136;16183		149.91	86.351	1	9794100			21476	1281	11886	11887	27629;27630;27631	27630					0.0259552859138239
KYSPFVVSF	9	Unmodified	_KYSPFVVSF_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2870483398438	2	537.286943	1072.55933	0.46053	0.00024744	0.7409	0.00039808	1.2014	0.00064551	537.2868745576214	64.72	2.7281	64.812	64.5	67.228	0.09288					193	99	3	0	0	0	2.32E-07	2	16104	16057;16104		171.09	103.01	1	10736000			21477	1281	11886	11887	27632;27633	27633					0.0259552859138239
KYSPFVVSF	9	Unmodified	_KYSPFVVSF_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2872314453125	2	537.286943	1072.55933	0.44009	0.00023646	0.99132	0.00053262	1.4314	0.00076908	537.2869149455986	64.852	2.4618	64.841	64.494	66.955	-0.011093					245	89	5	0	0	0	5.4053E-05	3	16129	16085;16129;16171		148.27	94.693	1	11863000			21478	1281	11886	11887	27634;27635;27636	27635					0.0259552859138239
KYSRWGLGF	9	Unmodified	_KYSRWGLGF_					0	0	0			REV__nc|ENSG00000082175|P06401-2|PGR	REV__nc|ENSG00000082175|P06401-2|PGR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8214721679688	2	557.295633	1112.57671	0.14697	8.1903E-05	0.37432	0.00020861	0.52129	0.00029051	557.2955125037398	80.429	2.7084	80.494	79.357	82.065	0.065102					160	115	2	0	0	0	0.24913	1	21363	21363		12.532	2.3482	1	340290	+		21479	13917	11887	11888	27637	27637					0.024928689170337748
KYSRWGLGF	9	Unmodified	_KYSRWGLGF_					0	0	0			REV__nc|ENSG00000082175|P06401-2|PGR	REV__nc|ENSG00000082175|P06401-2|PGR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2947998046875	2	557.295633	1112.57671	0.26538	0.00014789	-0.00010799	-6.0183E-08	0.26527	0.00014783	557.2954734047499	80.421	2.6751	80.394	79.351	82.026	-0.026817					169	106	3	0	0	0	0.27532	1	20708	20708		12.532	0	1	431450	+		21480	13917	11887	11888	27638	27638					0.024928689170337748
KYSSGFRNI	9	Unmodified	_KYSSGFRNI_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ATM|p.S496Ifs*16|1|0.17|ENSG00000149311|chr11:108250952-108250952|G/-|frameshift_variant;ATM|p.K750Sfs*3|1|0.31|ENSG00000149311|chr11:108256336-108256336|C/-|frameshift_variant;ATM|p.A886Kfs*12|1|0.14|ENSG00000149311|chr11:108268425-108268428|TAGC/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2827758789062	2	536.282723	1070.55089	0.22191	0.00011901	-0.22621	-0.00012131	-0.0042961	-2.3039E-06	536.2826970125558	27.656	1.0431	27.656	27.266	28.31	0					89	35	4	0	0	0	0.0090577	1	4702	4702		79.596	47.291	1	2327900			21481	62	11888	11889	27639	27639					0.01843974674761739
KYSSGFRNI	9	Unmodified	_KYSSGFRNI_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ATM|p.S496Ifs*16|1|0.17|ENSG00000149311|chr11:108250952-108250952|G/-|frameshift_variant;ATM|p.K750Sfs*3|1|0.31|ENSG00000149311|chr11:108256336-108256336|C/-|frameshift_variant;ATM|p.A886Kfs*12|1|0.14|ENSG00000149311|chr11:108268425-108268428|TAGC/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2828369140625	2	536.282723	1070.55089	0.041906	2.2473E-05	-0.071825	-3.8519E-05	-0.029919	-1.6045E-05	536.2827599561751	27.648	1.1292	27.626	27.321	28.45	-0.02141					84	39	3	0	0	0	0.0098873	1	4710	4710		79.596	39.639	1	2501600			21482	62	11888	11889	27640	27640					0.01843974674761739
KYSSGFRNI	9	Unmodified	_KYSSGFRNI_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ATM|p.S496Ifs*16|1|0.17|ENSG00000149311|chr11:108250952-108250952|G/-|frameshift_variant;ATM|p.K750Sfs*3|1|0.31|ENSG00000149311|chr11:108256336-108256336|C/-|frameshift_variant;ATM|p.A886Kfs*12|1|0.14|ENSG00000149311|chr11:108268425-108268428|TAGC/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2827758789062	2	536.282723	1070.55089	0.10436	5.5966E-05	-0.062397	-3.3462E-05	0.041961	2.2503E-05	536.2827528523366	27.676	0.90274	27.665	27.407	28.31	-0.011562					80	31	3	0	0	0	0.059987	1	4710	4710		53.404	28.005	1	2689800			21483	62	11888	11889	27641	27641					0.01843974674761739
KYSSNLGNF	9	Unmodified	_KYSSNLGNF_					0	0	0		nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2918701171875	2	515.253631	1028.49271	0.20928	0.00010783	0.57214	0.0002948	0.78142	0.00040263	515.2541892119731	38.266	0.50674	38.266	38.064	38.571	0					38	17	3	0	0	0	0.18022	1	7951	7951		37.075	19.962	1	286880			21484	6041	11889	11890	27642	27642					-0.020397069705268223
KYSSNLGNF	9	Unmodified	_KYSSNLGNF_					0	0	0		nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2916259765625	2	515.253631	1028.49271	0.30635	0.00015785	-0.03953	-2.0368E-05	0.26682	0.00013748	515.2537213072294	38.19	0.51931	38.281	38.101	38.62	0.090881					28	18	2	0	0	0	0.1303	1	7954	7954		42.312	30.072	1	314820			21485	6041	11889	11890	27643	27643					-0.020397069705268223
KYSSNLGNF	9	Unmodified	_KYSSNLGNF_					0	0	0		nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2915649414062	2	515.253631	1028.49271	0.16524	8.5139E-05	0.33554	0.00017289	0.50078	0.00025803	515.2540497752852	38.222	0.61496	38.32	38.007	38.622	0.097527					39	21	3	0	0	0	0.18479	1	7938	7938		34.932	12.196	1	278960			21486	6041	11889	11890	27644	27644					-0.020397069705268223
KYTEITATYF	10	Unmodified	_KYTEITATYF_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL;AGL|p.I817Nfs*3|1|0.24|ENSG00000162688|chr1:99884350-99884351|-/A|frameshift_variant	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.8115844726562	2	618.810979	1235.6074	0.63449	0.00039263	-0.49911	-0.00030885	0.13538	8.3775E-05	618.8104495888782	54.819	0.59306	54.819	54.526	55.119	0					56	21	4	0	0	0	0.0044422	3	13004	13004;13050;13105		94.909	73.372	1	1909700			21487	5600	11890	11891	27645;27646;27647	27645					-0.0009744227925239102
KYTEITATYF	10	Unmodified	_KYTEITATYF_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL;AGL|p.I817Nfs*3|1|0.24|ENSG00000162688|chr1:99884350-99884351|-/A|frameshift_variant	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.8108520507812	2	618.810979	1235.6074	0.42775	0.00026469	-0.34285	-0.00021216	0.084895	5.2534E-05	618.8106057088332	54.764	0.62154	54.827	54.511	55.132	0.063202					62	22	4	0	0	0	0.0044422	3	12987	12987;13038;13089		94.909	72.172	1	2058400			21488	5600	11890	11891	27648;27649;27650	27648					-0.0009744227925239102
KYTEITATYF	10	Unmodified	_KYTEITATYF_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL;AGL|p.I817Nfs*3|1|0.24|ENSG00000162688|chr1:99884350-99884351|-/A|frameshift_variant	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.81103515625	2	618.810979	1235.6074	0.56094	0.00034712	-0.37992	-0.0002351	0.18102	0.00011202	618.810630691935	54.997	0.64663	54.981	54.706	55.352	-0.015919					56	23	3	0	0	0	0.0027997	2	13075	13075;13125		104.48	87.918	1	2066200			21489	5600	11890	11891	27651;27652	27651					-0.0009744227925239102
KYTEKLEEI	9	Unmodified	_KYTEKLEEI_					0	0	0		ENST00000482730.1_1_7:130051992-130056799:-|nuORF;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41	ENST00000482730.1_1_7:130051992-130056799:-|nuORF	ENST00000482730.1_1_7:130051992-130056799:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.2598876953125	2	576.810979	1151.6074	0.72576	0.00041863	-1.1012	-0.00063519	-0.37544	-0.00021656	576.8103184393908	33.565	0.46966	33.631	33.405	33.875	0.06636					27	16	2	0	0	0	0.259	1	6558	6558		5.2969	1.7004	1	152490			21490	2080	11891	11892	27653	27653					0.037665577207462775
KYTEKLEEI	9	Unmodified	_KYTEKLEEI_					0	0	0		ENST00000482730.1_1_7:130051992-130056799:-|nuORF;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41	ENST00000482730.1_1_7:130051992-130056799:-|nuORF	ENST00000482730.1_1_7:130051992-130056799:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2603759765625	2	576.810979	1151.6074	0.083761	4.8314E-05	0.22719	0.00013105	0.31095	0.00017936	576.8106708208214	33.575	0.41037	33.642	33.441	33.852	0.066704					20	14	2	0	0	0	0.25612	1	6550	6550		8.1555	1.4324	1	143500			21491	2080	11891	11892	27654	27654					0.037665577207462775
KYTEKLEEI	9	Unmodified	_KYTEKLEEI_					0	0	0		ENST00000482730.1_1_7:130051992-130056799:-|nuORF;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41	ENST00000482730.1_1_7:130051992-130056799:-|nuORF	ENST00000482730.1_1_7:130051992-130056799:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	576.810979	1151.6074	0.5138	0.00029637	0.066075	3.8113E-05	0.57988	0.00033448	576.8107480120258	33.743	0.32342	33.743	33.617	33.94	0	0.070707	0.000461	NaN	8.1555	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151980			21492	2080	11891	11892							0.037665577207462775
KYTFPAEHRF	10	Unmodified	_KYTFPAEHRF_					0	0	0		ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA	ENST00000477618.1_1_9:74817496-74842957:+|nuORF	ENST00000477618.1_1_9:74817496-74842957:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.5558776855469	3	432.555895	1294.64586	-0.29749	-0.00012868	0.34489	0.00014918	0.047398	2.0502E-05	432.5560294811034	34.251	1.109	34.251	33.808	34.917	0					90	39	5	0	0	0	0.02129	2	6718	6718;6774		70.321	54.046	1	849270			21493	2860	11892	11893	27655;27656	27655					0.010319081459101653
KYTFPAEHRF	10	Unmodified	_KYTFPAEHRF_					0	0	0		ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA	ENST00000477618.1_1_9:74817496-74842957:+|nuORF	ENST00000477618.1_1_9:74817496-74842957:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.5557861328125	3	432.555895	1294.64586	0.054977	2.378E-05	-0.092687	-4.0092E-05	-0.037711	-1.6312E-05	432.5559084835719	34.091	1.0798	34.157	33.65	34.73	0.06636					110	38	5	0	0	0	0.0056481	2	6708	6659;6708		87.878	67.007	1	902180			21494	2860	11892	11893	27657;27658	27658					0.010319081459101653
KYTFPAEHRF	10	Unmodified	_KYTFPAEHRF_					0	0	0		ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA	ENST00000477618.1_1_9:74817496-74842957:+|nuORF	ENST00000477618.1_1_9:74817496-74842957:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5560302734375	3	432.555895	1294.64586	-0.22137	-9.5753E-05	0.26605	0.00011508	0.044682	1.9327E-05	432.5560237519335	34.066	1.0087	34.132	33.685	34.694	0.0667					116	35	5	0	0	0	0.023019	2	6646	6646;6711		68.436	54.917	1	1029200			21495	2860	11892	11893	27659;27660	27659					0.010319081459101653
KYTKIFNDF	9	Unmodified	_KYTKIFNDF_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.3087768554688	2	588.308406	1174.60226	0.53858	0.00031685	-0.2612	-0.00015367	0.27738	0.00016318	588.3083297254902	45.446	1.6029	45.506	45.142	46.745	0.059837					160	57	5	0	0	0	4.2048E-33	8	10193	10102;10150;10193;10240;10255;10308;10359;10410		267.53	171.42	1	17007000			21496	479	11893	11894	27661;27662;27663;27664;27665;27666;27667;27668	27663					0.02194298648782933
KYTKIFNDF	9	Unmodified	_KYTKIFNDF_					0	0	0		nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	nc|ENSG00000015171|Q15326-4|ZMYND11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.3086547851562	2	588.308406	1174.60226	0.49691	0.00029233	-0.24009	-0.00014125	0.25681	0.00015108	588.3083405149213	45.442	1.6386	45.507	45.199	46.838	0.065048					182	59	5	0	0	0	1.6305E-32	9	10179	10093;10136;10179;10227;10246;10289;10334;10385;10472		251.75	166.1	1	19113000			21497	479	11893	11894	27669;27670;27671;27672;27673;27674;27675;27676;27677	27671					0.02194298648782933
KYTPGFNIA	9	Unmodified	_KYTPGFNIA_					0	0	0			REV__nc|ENSG00000078269|O15056-3|SYNJ2	REV__nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7695007324219	2	505.768917	1009.52328	0.56176	0.00028412	0.62	0.00031358	1.1818	0.0005977	505.7691604961738	45.448	0.51063	45.507	45.253	45.763	0.059834					35	17	3	0	0	0	0.074331	1	10173	10173		61.357	31.517	1	644520	+		21498	13855	11894	11895	27678	27678					0.018900714145161146
KYTPGFNIA	9	Unmodified	_KYTPGFNIA_					0	0	0			REV__nc|ENSG00000078269|O15056-3|SYNJ2	REV__nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2823486328125	2	505.768917	1009.52328	0.44252	0.00022381	0.80287	0.00040607	1.2454	0.00062988	505.7692475311275	45.393	0.56606	45.458	45.274	45.84	0.065048					42	20	3	0	0	0	0.10135	1	10168	10168		52.268	8.4101	1	494750	+		21499	13855	11894	11895	27679	27679					0.018900714145161146
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2957153320312	2	545.295633	1088.57671	0.38862	0.00021191	0.71741	0.0003912	1.106	0.00060312	545.2957896012807	17.721	1.1619	17.721	17.452	18.614	0					95	39	4	0	0	0	0.0042343	1	1678	1678		92.491	46.47	1	498570			21500	6289	11895	11896	27680	27680					0.03596868917043139
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2957153320312	2	545.295633	1088.57671	0.40697	0.00022192	0.3705	0.00020203	0.77747	0.00042395	545.2957404125834	17.9	1.0106	17.782	17.545	18.556	-0.11739					79	34	3	0	0	0	0.0032391	1	1743	1743		100.37	54.351	1	552360			21501	6289	11895	11896	27681	27681					0.03596868917043139
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2958984375	2	545.295633	1088.57671	0.42351	0.00023094	0.31347	0.00017093	0.73698	0.00040187	545.2956824941461	17.875	1.3138	17.815	17.472	18.786	-0.060429					100	46	3	0	0	0	0.0028127	2	1767	1721;1767		103.75	57.727	1	424760			21502	6289	11895	11896	27682;27683	27683					0.03596868917043139
KYTSYILAF	9	Unmodified	_KYTSYILAF_					0	0	0		ENSG00000111537|ENST00000229135|IFNG	ENSG00000111537|ENST00000229135|IFNG	ENSG00000111537|ENST00000229135|IFNG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3003540039062	2	553.30005	1104.58555	0.16622	9.1967E-05	0.6512	0.00036031	0.81741	0.00045228	553.3002491237792	64.957	0.93506	64.957	64.699	65.634	0					85	33	4	0	0	0	0.1335	1	16158	16158		47.594	19.108	1	1166900			21503	2368	11896	11897	27684	27684					0.037437977628542285
KYTSYILAF	9	Unmodified	_KYTSYILAF_					0	0	0		ENSG00000111537|ENST00000229135|IFNG	ENSG00000111537|ENST00000229135|IFNG	ENSG00000111537|ENST00000229135|IFNG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3004150390625	2	553.30005	1104.58555	0.28268	0.00015641	0.50099	0.0002772	0.78367	0.00043361	553.3001485705435	64.889	0.98997	64.978	64.742	65.732	0.088882					87	36	4	0	0	0	0.099099	1	16138	16138		55.503	30.103	1	1077800			21504	2368	11896	11897	27685	27685					0.037437977628542285
KYTTLIAKL	9	Unmodified	_KYTTLIAKL_					0	0	0		ENST00000485009.1_1_7:115863047-115889401:+|nuORF;ENST00000461440.5_1_7:115850593-115889401:+|nuORF;nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES	ENST00000485009.1_1_7:115863047-115889401:+|nuORF	ENST00000485009.1_1_7:115863047-115889401:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8316040039062	2	525.831517	1049.64848	0.49553	0.00026057	0.087942	4.6243E-05	0.58348	0.00030681	525.8314041781089	44.206	0.55745	44.206	43.904	44.462	0					45	20	3	0	0	0	0.003673	2	9752	9752;9804		96.936	62.534	1	819610			21505	3857	11897	11898	27686;27687	27686					0.12564363550905
KYTTLIAKL	9	Unmodified	_KYTTLIAKL_					0	0	0		ENST00000485009.1_1_7:115863047-115889401:+|nuORF;ENST00000461440.5_1_7:115850593-115889401:+|nuORF;nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES	ENST00000485009.1_1_7:115863047-115889401:+|nuORF	ENST00000485009.1_1_7:115863047-115889401:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8316040039062	2	525.831517	1049.64848	0.47795	0.00025132	0.32586	0.00017135	0.80381	0.00042267	525.831473165981	43.956	0.65053	44.034	43.736	44.387	0.077518					50	24	3	0	0	0	8.0996E-05	1	9698	9698		143.91	100.05	1	1052700			21506	3857	11897	11898	27688	27688					0.12564363550905
KYTTLIAKL	9	Unmodified	_KYTTLIAKL_					0	0	0		ENST00000485009.1_1_7:115863047-115889401:+|nuORF;ENST00000461440.5_1_7:115850593-115889401:+|nuORF;nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES	ENST00000485009.1_1_7:115863047-115889401:+|nuORF	ENST00000485009.1_1_7:115863047-115889401:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8316650390625	2	525.831517	1049.64848	0.50073	0.0002633	0.022089	1.1615E-05	0.52282	0.00027491	525.8313400424363	43.941	0.47335	44.025	43.765	44.238	0.083996					41	17	3	0	0	0	0.0031966	2	9664	9664;9714		100.71	61.053	1	963330			21507	3857	11897	11898	27689;27690	27689					0.12564363550905
KYTVQLKQ	8	Unmodified	_KYTVQLKQ_					0	0	0			REV__ENSG00000070366|ENST00000263073|SMG6	REV__ENSG00000070366|ENST00000263073|SMG6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7537841796875	2	504.297842	1006.58113	0.42998	0.00021684	-0.068632	-3.4611E-05	0.36134	0.00018223	504.29777530636994	20.152	0.31344	20.036	19.84	20.154	-0.11592					17	10	2	0	0	0	0.34272	1	2452	2452		7.9102	0	1	60833	+		21508	13724	11898	11899	27691	27691					0.07810333339944009
KYVADFSQF	9	Unmodified	_KYVADFSQF_					0	0	0		ENSG00000157551|ENST00000398938|KCNJ15	ENSG00000157551|ENST00000398938|KCNJ15	ENSG00000157551|ENST00000398938|KCNJ15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2797241210938	2	552.771657	1103.52876	0.58461	0.00032316	-1.401	-0.00077444	-0.8164	-0.00045128	553.2722849660311	53.176	1.0106	53.232	52.913	53.923	0.056255					79	37	4	0	0	0	0.08842	1	12500	12500		53.317	15.343	1	2599600			21509	5313	11899	11900	27692	27692					-0.018862497936879663
KYVADFSQF	9	Unmodified	_KYVADFSQF_					0	0	0		ENSG00000157551|ENST00000398938|KCNJ15	ENSG00000157551|ENST00000398938|KCNJ15	ENSG00000157551|ENST00000398938|KCNJ15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2800903320312	2	552.771657	1103.52876	0.4141	0.0002289	-1.399	-0.00077334	-0.98493	-0.00054444	552.771466648451	53.494	0.84209	53.484	53.142	53.984	-0.0096092					88	31	4	0	0	0	0.08842	1	12626	12626		61.09	41.833	1	1976400			21510	5313	11899	11900	27693	27693					-0.018862497936879663
KYVDLTVSF	9	Unmodified	_KYVDLTVSF_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7394409179688	2	536.289682	1070.56481	0.32688	0.0001753	2.3374	0.0012535	2.6643	0.0014288	536.2914818497577	61.209	0.83755	61.209	61.022	61.86	0					44	31	3	0	0	0	0.1645	1	15035	15035		40.239	22.093	1	646370			21511	560	11900	11901	27694	27694					0.0323520738318166
KYVDLTVSF	9	Unmodified	_KYVDLTVSF_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7398681640625	2	536.289682	1070.56481	0.18455	9.8973E-05	1.6849	0.00090357	1.8694	0.0010025	536.2911400766844	61.118	0.69382	61.215	61.065	61.759	0.096989					34	25	2	0	0	0	0.075356	1	14990	14990		63.961	33.324	1	761500			21512	560	11900	11901	27695	27695					0.0323520738318166
KYVDLTVSF	9	Unmodified	_KYVDLTVSF_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7393188476562	2	536.289682	1070.56481	0.36269	0.00019451	0.33527	0.0001798	0.69796	0.00037431	536.2896327034211	61.196	0.43407	61.187	61.016	61.45	-0.0094566					25	15	2	0	0	0	0.19208	1	15014	15014		33.445	20.402	1	809340			21513	560	11900	11901	27696	27696					0.0323520738318166
KYVENFGLI	9	Unmodified	_KYVENFGLI_					0	0	0		ENST00000561636.2_1_15:43423309-43423531:+|nuORF;ENSG00000118363|ENST00000263672|SPCS2	ENST00000561636.2_1_15:43423309-43423531:+|nuORF	ENST00000561636.2_1_15:43423309-43423531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7978515625	2	541.797675	1081.5808	0.41904	0.00022704	0.10931	5.9225E-05	0.52836	0.00028626	541.7976956018421	59.125	1.3979	59.125	58.5	59.897	0					156	48	5	0	0	0	0.0073901	4	14368	14319;14368;14417;14470		83.429	43.479	1	9673200			21514	2824	11901	11902	27697;27698;27699;27700	27698					0.043269136200933644
KYVENFGLI	9	Unmodified	_KYVENFGLI_					0	0	0		ENST00000561636.2_1_15:43423309-43423531:+|nuORF;ENSG00000118363|ENST00000263672|SPCS2	ENST00000561636.2_1_15:43423309-43423531:+|nuORF	ENST00000561636.2_1_15:43423309-43423531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7977294921875	2	541.797675	1081.5808	0.53122	0.00028782	0.024211	1.3117E-05	0.55543	0.00030093	541.7976699036449	58.971	1.1552	59.062	58.612	59.767	0.091305					136	40	4	0	0	0	0.0073901	4	14278	14278;14326;14377;14431		83.429	45.253	1	11090000			21515	2824	11901	11902	27701;27702;27703;27704	27701					0.043269136200933644
KYVENFGLI	9	Unmodified	_KYVENFGLI_					0	0	0		ENST00000561636.2_1_15:43423309-43423531:+|nuORF;ENSG00000118363|ENST00000263672|SPCS2	ENST00000561636.2_1_15:43423309-43423531:+|nuORF	ENST00000561636.2_1_15:43423309-43423531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7979125976562	2	541.797675	1081.5808	0.6666	0.00036116	-0.06244	-3.383E-05	0.60416	0.00032733	541.7975935530461	59.102	1.3977	59.088	58.684	60.082	-0.014267					142	48	5	0	0	0	0.0028542	4	14378	14331;14378;14430;14489		103.42	55.671	1	11200000			21516	2824	11901	11902	27705;27706;27707;27708	27706					0.043269136200933644
KYVERIHYI	9	Unmodified	_KYVERIHYI_					0	0	0		nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.2362365722656	3	407.564391	1219.67134	-0.0011311	-4.6099E-07	-0.22833	-9.3058E-05	-0.22946	-9.3518E-05	407.56420067392327	31.926	0.74598	31.926	31.694	32.44	0					57	26	3	0	0	0	0.28225	1	6101	6101		11.495	0.59575	1	1597900			21517	1833	11902	11903	27709	27709					0.07029382668383732
KYVERIHYI	9	Unmodified	_KYVERIHYI_					0	0	0		nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5643005371094	3	407.564391	1219.67134	0.12797	5.2157E-05	-0.29839	-0.00012161	-0.17042	-6.9455E-05	407.8986227533721	31.874	1.0363	31.917	31.709	32.745	0.042364					69	36	4	0	0	0	0.13296	1	6006	6006		33.445	16.002	1	1967200			21518	1833	11902	11903	27710	27710					0.07029382668383732
KYVERIHYI	9	Unmodified	_KYVERIHYI_					0	0	0		nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2361145019531	3	407.564391	1219.67134	0.03911	1.594E-05	-0.31406	-0.000128	-0.27495	-0.00011206	407.56422098733105	31.848	0.94453	31.889	31.672	32.616	0.040991					67	33	3	0	0	0	0.14786	1	6070	6070		31.268	11.906	1	1702100			21519	1833	11902	11903	27711	27711					0.07029382668383732
KYVESFRRF	9	Unmodified	_KYVESFRRF_					0	0	0		ENST00000485653.1_1_2:138722082-138758488:+|nuORF;nc|ENSG00000150540|P50135-3|HNMT;nc|ENSG00000150540|P50135-2|HNMT;ENST00000467390.5_1_2:138722061-138759907:+|nuORF;ENSG00000150540|ENST00000280097|HNMT	ENST00000485653.1_1_2:138722082-138758488:+|nuORF	ENST00000485653.1_1_2:138722082-138758488:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2240295410156	3	411.224257	1230.65094	0.055808	2.295E-05	-0.31228	-0.00012842	-0.25647	-0.00010547	411.22416407939335	31.975	1.001	31.975	31.719	32.72	0					103	35	4	0	0	0	0.19157	1	6025	6025		24.882	9.1429	1	2054400			21520	4915	11903	11904	27712	27712					0.04484212008560462
KYVESFRRF	9	Unmodified	_KYVESFRRF_					0	0	0		ENST00000485653.1_1_2:138722082-138758488:+|nuORF;nc|ENSG00000150540|P50135-3|HNMT;nc|ENSG00000150540|P50135-2|HNMT;ENST00000467390.5_1_2:138722061-138759907:+|nuORF;ENSG00000150540|ENST00000280097|HNMT	ENST00000485653.1_1_2:138722082-138758488:+|nuORF	ENST00000485653.1_1_2:138722082-138758488:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.5714416503906	3	411.224257	1230.65094	0.34497	0.00014186	-0.57428	-0.00023616	-0.22931	-9.4298E-05	411.2240700655374	31.916	0.98083	31.958	31.737	32.717	0.042366					98	34	4	0	0	0	0.33515	1	6227	6227		3.5871	0	1	2285300			21521	4915	11903	11904	27713	27713					0.04484212008560462
KYVESFRRF	9	Unmodified	_KYVESFRRF_					0	0	0		ENST00000485653.1_1_2:138722082-138758488:+|nuORF;nc|ENSG00000150540|P50135-3|HNMT;nc|ENSG00000150540|P50135-2|HNMT;ENST00000467390.5_1_2:138722061-138759907:+|nuORF;ENSG00000150540|ENST00000280097|HNMT	ENST00000485653.1_1_2:138722082-138758488:+|nuORF	ENST00000485653.1_1_2:138722082-138758488:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	411.224257	1230.65094	0.1731	7.1182E-05	-0.53329	-0.0002193	-0.3602	-0.00014812	411.2241421957557	31.896	0.94814	31.937	31.696	32.644	0.040991	-0.01949	-8.2474E-05	NaN	24.882	94	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1774900			21522	4915	11903	11904							0.04484212008560462
KYVFRKGQVK	10	Unmodified	_KYVFRKGQVK_					0	0	0			REV__ENSG00000154727|ENST00000400075|GABPA	REV__ENSG00000154727|ENST00000400075|GABPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.55810546875	3	418.255669	1251.74518	-0.31878	-0.00013333	-0.11472	-4.7981E-05	-0.4335	-0.00018131	418.25554990186697	15.304	0.49087	15.304	15.1	15.591	0					40	16	4	0	0	0	0.31911	1	958	958		3.8763	0	1	139820	+		21523	16674	11904	11905	27714	27714					0.1293735083067986
KYVGAVQML	9	Oxidation (M)	_KYVGAVQM(Oxidation (M))L_		KYVGAVQM(1)L		KYVGAVQM(120)L	0	0	1		nc|ENSG00000048471|Q8TEQ0-2|SNX29;ENSG00000048471|ENST00000566228|SNX29	nc|ENSG00000048471|Q8TEQ0-2|SNX29	nc|ENSG00000048471|Q8TEQ0-2|SNX29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7785034179688	2	512.778428	1023.5423	0.63785	0.00032708	-2.2462	-0.0011518	-1.6083	-0.00082471	512.7772208662338	36.995	1.007	36.995	36.7	37.707	0					99	35	4	0	0	0	0.0013036	4	7576	7552;7576;7626;7700		118.89	46.972	1	2679900			21524	642	11905	11906	27715;27716;27717;27718	27716		76			0.0314728471394119
KYVGAVQML	9	Oxidation (M)	_KYVGAVQM(Oxidation (M))L_		KYVGAVQM(1)L		KYVGAVQM(120)L	0	0	1		nc|ENSG00000048471|Q8TEQ0-2|SNX29;ENSG00000048471|ENST00000566228|SNX29	nc|ENSG00000048471|Q8TEQ0-2|SNX29	nc|ENSG00000048471|Q8TEQ0-2|SNX29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7784423828125	2	512.778428	1023.5423	0.34332	0.00017605	-2.1302	-0.0010923	-1.7869	-0.00091629	512.7772481733587	36.87	1.2747	36.957	36.656	37.93	0.087406					118	46	4	0	0	0	0.0013036	5	7522	7515;7522;7572;7606;7632		118.89	46.972	1	2783800			21525	642	11905	11906	27719;27720;27721;27722;27723	27720		76			0.0314728471394119
KYVGAVQML	9	Oxidation (M)	_KYVGAVQM(Oxidation (M))L_		KYVGAVQM(1)L		KYVGAVQM(100)L	0	0	1		nc|ENSG00000048471|Q8TEQ0-2|SNX29;ENSG00000048471|ENST00000566228|SNX29	nc|ENSG00000048471|Q8TEQ0-2|SNX29	nc|ENSG00000048471|Q8TEQ0-2|SNX29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7785034179688	2	512.778428	1023.5423	0.50078	0.00025679	-2.291	-0.0011748	-1.7902	-0.00091797	512.7772361147881	36.92	1.1334	37.013	36.602	37.735	0.093018					110	41	4	0	0	0	0.0033114	3	7530	7508;7530;7579		99.799	37.432	1	2607100			21526	642	11905	11906	27724;27725;27726	27725		76			0.0314728471394119
KYVHLFPKL	9	Unmodified	_KYVHLFPKL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.8051147460938	2	572.847502	1143.68045	0.21706	0.00012434	-0.24878	-0.00014251	-0.031711	-1.8166E-05	572.8472132024573	43.253	0.48293	43.253	43.062	43.545	0					34	17	2	0	0	0	0.18123	1	9526	9526		34.402	12.865	1	361670			21527	4558	11906	11907	27727	27727					0.11435776024700317
KYVHLFPKL	9	Unmodified	_KYVHLFPKL_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.8052368164062	2	572.847502	1143.68045	0.4456	0.00025526	-0.84786	-0.00048569	-0.40225	-0.00023043	572.8469173379405	42.974	0.57148	43.059	42.861	43.433	0.085197					37	20	2	0	0	0	0.18123	1	9438	9438		34.402	13.987	1	274530			21528	4558	11906	11907	27728	27728					0.11435776024700317
KYVKDFHKF	9	Unmodified	_KYVKDFHKF_					0	0	0		ENSG00000196081|ENST00000418100|ZNF724	ENSG00000196081|ENST00000418100|ZNF724	ENSG00000196081|ENST00000418100|ZNF724	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.55706787109375	3	404.557236	1210.64988	-0.32527	-0.00013159	0.45714	0.00018494	0.13187	5.3349E-05	404.55732757886983	23.035	0.94628	23.035	22.533	23.48	0					86	32	4	0	0	0	0.062981	3	3327	3281;3327;3392		48.073	37.922	1	406330			21529	7819	11907	11908	27729;27730;27731	27730					0.05297997639627283
KYVKDFHKF	9	Unmodified	_KYVKDFHKF_					0	0	0		ENSG00000196081|ENST00000418100|ZNF724	ENSG00000196081|ENST00000418100|ZNF724	ENSG00000196081|ENST00000418100|ZNF724	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5570068359375	3	404.557236	1210.64988	-0.33601	-0.00013593	0.57786	0.00023378	0.24185	9.7842E-05	404.55734277522663	23.153	0.80446	23.066	22.628	23.433	-0.08761					74	28	5	0	0	0	0.043673	4	3366	3319;3366;3421;3437		55.249	34.241	1	490210			21530	7819	11907	11908	27732;27733;27734;27735	27733					0.05297997639627283
KYVKDFHKF	9	Unmodified	_KYVKDFHKF_					0	0	0		ENSG00000196081|ENST00000418100|ZNF724	ENSG00000196081|ENST00000418100|ZNF724	ENSG00000196081|ENST00000418100|ZNF724	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.55712890625	3	404.557236	1210.64988	-0.15442	-6.2473E-05	0.30598	0.00012378	0.15155	6.1312E-05	404.55733749446875	23.161	0.84739	23.116	22.709	23.556	-0.044867					76	28	4	0	0	0	0.0034464	2	3385	3340;3385		98.73	68.026	1	634700			21531	7819	11907	11908	27736;27737	27737					0.05297997639627283
KYVKGLISI	9	Unmodified	_KYVKGLISI_					0	0	0		ENSG00000118965|ENST00000281405|WDR35;nc|ENSG00000118965|Q9P2L0|WDR35	ENSG00000118965|ENST00000281405|WDR35	ENSG00000118965|ENST00000281405|WDR35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2788391113281	2	510.826235	1019.63792	0.29994	0.00015322	-0.099452	-5.0803E-05	0.20048	0.00010241	510.8261231833045	43.369	0.67706	43.369	43.116	43.793	0					57	24	3	0	0	0	0.17696	1	9525	9525		36.506	13.77	1	968820			21532	2853	11908	11909	27738	27738					0.1288838089649289
KYVKGLISI	9	Unmodified	_KYVKGLISI_					0	0	0		ENSG00000118965|ENST00000281405|WDR35;nc|ENSG00000118965|Q9P2L0|WDR35	ENSG00000118965|ENST00000281405|WDR35	ENSG00000118965|ENST00000281405|WDR35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2781982421875	2	510.826235	1019.63792	0.43031	0.00021981	-0.077247	-3.946E-05	0.35306	0.00018035	510.8261604707689	43.164	0.8181	43.241	43.023	43.841	0.077515					61	29	3	0	0	0	0.17696	1	9439	9439		36.506	7.4246	1	1460000			21533	2853	11908	11909	27739	27739					0.1288838089649289
KYVKGLISI	9	Unmodified	_KYVKGLISI_					0	0	0		ENSG00000118965|ENST00000281405|WDR35;nc|ENSG00000118965|Q9P2L0|WDR35	ENSG00000118965|ENST00000281405|WDR35	ENSG00000118965|ENST00000281405|WDR35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2784423828125	2	510.826235	1019.63792	0.18932	9.671E-05	0.15215	7.7724E-05	0.34147	0.00017443	510.8262256651767	43.14	0.86374	43.224	42.978	43.841	0.083996					59	31	3	0	0	0	0.17696	1	9451	9451		36.506	8.8774	1	1064100			21534	2853	11908	11909	27740	27740					0.1288838089649289
KYVKIFDNF	9	Unmodified	_KYVKIFDNF_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.3187255859375	2	587.318774	1172.623	0.79975	0.00046971	-0.17457	-0.00010253	0.62518	0.00036718	587.3185501278645	50.641	0.86909	50.641	50.353	51.222	0					104	31	5	0	0	0	4.8913E-11	2	11732	11732;11780		187.3	140.3	1	4085100			21535	341	11909	11910	27741;27742	27741					0.043588890284581794
KYVKIFDNF	9	Unmodified	_KYVKIFDNF_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.3190307617188	2	587.318774	1172.623	0.77407	0.00045463	-0.15526	-9.1189E-05	0.61881	0.00036344	587.3185773725023	50.645	0.95198	50.69	50.343	51.295	0.044891					117	34	5	0	0	0	7.3424E-17	3	11772	11725;11772;11822		218.2	162.02	1	3783400			21536	341	11909	11910	27743;27744;27745	27744					0.043588890284581794
KYVKIFDNF	9	Unmodified	_KYVKIFDNF_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.319091796875	2	587.318774	1172.623	0.82388	0.00048388	-0.14797	-8.6907E-05	0.67591	0.00039698	587.3185308628488	50.759	0.92108	50.768	50.426	51.347	0.0095634					115	34	5	0	0	0	7.3424E-17	3	11779	11735;11779;11830		218.2	170.45	1	3962700			21537	341	11909	11910	27746;27747;27748	27747					0.043588890284581794
KYVKILYDF	9	Unmodified	_KYVKILYDF_					0	0	0		ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8369750976562	2	594.8368	1187.65905	0.55437	0.00032976	-0.27	-0.00016061	0.28437	0.00016915	594.8363854281187	53.19	0.71575	53.19	52.906	53.622	0					86	26	5	0	0	0	0.001957	1	12538	12538		110.55	86.532	1	1758500			21538	6962	11910	11911	27749	27749					0.07272346205309077
KYVKILYDF	9	Unmodified	_KYVKILYDF_					0	0	0		ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8368530273438	2	594.8368	1187.65905	0.67948	0.00040418	-0.41166	-0.00024487	0.26783	0.00015931	594.8363070283823	53.171	0.62117	53.227	52.99	53.611	0.056259					73	22	4	0	0	0	0.001957	1	12522	12522		110.55	86.532	1	1673700			21539	6962	11910	11911	27750	27750					0.07272346205309077
KYVKILYDF	9	Unmodified	_KYVKILYDF_					0	0	0		ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.836669921875	2	594.8368	1187.65905	0.4937	0.00029367	-0.16596	-9.872E-05	0.32774	0.00019495	594.8365123395977	53.408	1.0073	53.398	53.142	54.149	-0.0096054					85	37	4	0	0	0	0.001957	2	12590	12590;12637		110.55	86.532	1	1833000			21540	6962	11910	11911	27751;27752	27751					0.07272346205309077
KYVKVFHQF	9	Unmodified	_KYVKVFHQF_					0	0	0		ENST00000311237.4_19:20578692-20592633:-|nuORF;ENSG00000256229|ENST00000335117|ZNF486	ENST00000311237.4_19:20578692-20592633:-|nuORF	ENST00000311237.4_19:20578692-20592633:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.813720703125	2	598.334759	1194.65496	0.42025	0.00025145	0.19418	0.00011619	0.61443	0.00036763	598.3349323188894	32.949	0.48428	32.949	32.749	33.233	0					33	16	3	0	0	0	0.22061	1	6340	6340		24.021	17.815	1	215660			21541	8625	11911	11912	27753	27753					0.06542301502258852
KYVKVFHQF	9	Unmodified	_KYVKVFHQF_					0	0	0		ENST00000311237.4_19:20578692-20592633:-|nuORF;ENSG00000256229|ENST00000335117|ZNF486	ENST00000311237.4_19:20578692-20592633:-|nuORF	ENST00000311237.4_19:20578692-20592633:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.3352661132812	2	598.334759	1194.65496	0.53185	0.00031822	-0.0059651	-3.5691E-06	0.52588	0.00031465	598.334712054106	32.798	0.41584	32.853	32.675	33.091	0.055309					23	14	2	0	0	0	0.0059482	1	6315	6315		85.642	58.013	1	232750			21542	8625	11911	11912	27754	27754					0.06542301502258852
KYVKVFHQF	9	Unmodified	_KYVKVFHQF_					0	0	0		ENST00000311237.4_19:20578692-20592633:-|nuORF;ENSG00000256229|ENST00000335117|ZNF486	ENST00000311237.4_19:20578692-20592633:-|nuORF	ENST00000311237.4_19:20578692-20592633:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8134155273438	2	598.334759	1194.65496	0.36393	0.00021775	0.781	0.0004673	1.1449	0.00068505	598.3352352802494	32.883	0.30169	32.937	32.791	33.093	0.054371					23	10	3	0	0	0	0.20167	1	6326	6326		29.082	22.358	1	282470			21543	8625	11911	11912	27755	27755					0.06542301502258852
KYVPAIAHL	9	Unmodified	_KYVPAIAHL_					0	0	0		ENSG00000106066|ENST00000265394|CPVL;CPVL|p.V344Sfs*18|1|0.04|ENSG00000106066|chr7:29064168-29064169|-/AGAAGTGATTTGTAATTTGA|frameshift_variant	ENSG00000106066|ENST00000265394|CPVL	ENSG00000106066|ENST00000265394|CPVL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.30316162109375	2	506.302927	1010.5913	0.46563	0.00023575	-0.52268	-0.00026463	-0.057049	-2.8884E-05	506.3027960174793	40.506	0.85443	40.598	40.254	41.109	0.09267					73	31	3	0	0	0	0.0024216	2	8663	8663;8715		106.85	68.694	1	3241700			21544	2053	11912	11913	27756;27757	27756					0.08642941065158993
KYVPAIAHL	9	Unmodified	_KYVPAIAHL_					0	0	0		ENSG00000106066|ENST00000265394|CPVL;CPVL|p.V344Sfs*18|1|0.04|ENSG00000106066|chr7:29064168-29064169|-/AGAAGTGATTTGTAATTTGA|frameshift_variant	ENSG00000106066|ENST00000265394|CPVL	ENSG00000106066|ENST00000265394|CPVL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.30303955078125	2	506.302927	1010.5913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.535	1	40.634	40.134	41.134	0.099407								0	0	0	1.2824E-06	1	8647	8647		129.2	58.067	1				21545	2053	11912	11913	27758	27758					0.08642941065158993
KYVPAIAHL	9	Unmodified	_KYVPAIAHL_					0	0	0		ENSG00000106066|ENST00000265394|CPVL;CPVL|p.V344Sfs*18|1|0.04|ENSG00000106066|chr7:29064168-29064169|-/AGAAGTGATTTGTAATTTGA|frameshift_variant	ENSG00000106066|ENST00000265394|CPVL	ENSG00000106066|ENST00000265394|CPVL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.3025817871094	2	506.302927	1010.5913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.709	1	40.809	40.309	41.309	0.099407								0	0	0	0.10826	1	8699	8699		44.407	21.259	1				21546	2053	11912	11913	27759	27759					0.08642941065158993
KYVPYSESF	9	Unmodified	_KYVPYSESF_					0	0	0		ENSG00000085788|ENST00000397166|DDHD2;ENST00000519857.5_1_8:38089361-38095786:+|nuORF	ENSG00000085788|ENST00000397166|DDHD2	ENSG00000085788|ENST00000397166|DDHD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.8040771484375	2	560.27149	1118.52843	0.45477	0.00025479	0.039415	2.2083E-05	0.49418	0.00027688	560.2710766781079	45.641	0.39565	45.7	45.475	45.871	0.059834					20	13	2	0	0	0	0.22596	1	10249	10249		21.747	10.923	1	224430			21547	1264	11913	11914	27760	27760					-0.02609669513526569
KYVPYSESF	9	Unmodified	_KYVPYSESF_					0	0	0		ENSG00000085788|ENST00000397166|DDHD2;ENST00000519857.5_1_8:38089361-38095786:+|nuORF	ENSG00000085788|ENST00000397166|DDHD2	ENSG00000085788|ENST00000397166|DDHD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.803466796875	2	560.27149	1118.52843	0.42889	0.0002403	0.52239	0.00029268	0.95129	0.00053298	560.2713807487255	45.593	0.58339	45.658	45.487	46.07	0.065048					26	20	2	0	0	0	0.24311	1	10150	10150		16.942	2.104	1	339290			21548	1264	11913	11914	27761	27761					-0.02609669513526569
KYVRELKKT	9	Unmodified	_KYVRELKKT_					0	0	0		ENSG00000125445|ENST00000245539|MRPS7	ENSG00000125445|ENST00000245539|MRPS7	ENSG00000125445|ENST00000245539|MRPS7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.859375	2	582.858598	1163.70264	0.2672	0.00015574	1.3063	0.00076142	1.5735	0.00091716	582.8591638161581	107.43	0.094955	107.44	107.39	107.48	0.0067062					30	13	4	0	0	0	0.33719	1	28341	28341		3.2813	0.28607	1	1922200			21549	3205	11914	11915	27762	27762					0.12733955702469757
KYVRELKKT	9	Unmodified	_KYVRELKKT_					0	0	0		ENSG00000125445|ENST00000245539|MRPS7	ENSG00000125445|ENST00000245539|MRPS7	ENSG00000125445|ENST00000245539|MRPS7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	582.858598	1163.70264	0.062545	3.6455E-05	1.9885	0.001159	2.051	0.0011954	582.8595266993444	107.44	0.064728	107.43	107.39	107.46	-0.0085754	-0.0034259	0.00016273	NaN	3.2813	24	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2165800			21550	3205	11914	11915							0.12733955702469757
KYVSGEFRF	9	Unmodified	_KYVSGEFRF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.7930297851562	2	566.792924	1131.57129	0.024395	1.3827E-05	0.33114	0.00018769	0.35554	0.00020151	566.7930261825657	42.257	0.57385	42.257	41.969	42.543	0					43	20	3	0	0	0	0.0030911	2	9180	9180;9227		101.54	72.462	1	1408200			21551	3181	11915	11916	27763;27764	27763					0.01077145334556917
KYVSGEFRF	9	Unmodified	_KYVSGEFRF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.7926635742188	2	566.792924	1131.57129	0.44849	0.0002542	-0.06447	-3.6541E-05	0.38402	0.00021766	566.7928033975134	41.742	0.619	41.832	41.738	42.357	0.090252					43	23	2	0	0	0	0.0042709	1	9061	9061		92.201	63.119	1	1530500			21552	3181	11915	11916	27765	27765					0.01077145334556917
KYVSGEFRF	9	Unmodified	_KYVSGEFRF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	566.792924	1131.57129	0.55582	0.00031503	0.086657	4.9117E-05	0.64248	0.00036415	566.7929591202511	41.704	0.56515	41.801	41.7	42.265	0.096626	-0.015631	8.6017E-05	NaN	92.201	41	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2171600			21553	3181	11915	11916							0.01077145334556917
KYVSINSTL	9	Unmodified	_KYVSINSTL_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.8133544921875	2	512.787307	1023.56006	0.0057175	2.9318E-06	0.83623	0.00042881	0.84194	0.00043174	512.7874708823342	42.404	0.29031	42.404	42.277	42.567	0					16	10	2	0	0	0	0.11018	1	9248	9248		45.74	25.286	1	223220			21554	2160	11916	11917	27766	27766					0.049223232404415285
KYVSINSTL	9	Unmodified	_KYVSINSTL_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.8134155273438	2	512.787307	1023.56006	0.33183	0.00017016	0.45664	0.00023416	0.78847	0.00040432	512.7875949646102	42.233	0.36937	42.319	42.093	42.462	0.085197					21	12	2	0	0	0	0.19888	1	9188	9188		26.021	11.182	1	243390			21555	2160	11916	11917	27767	27767					0.049223232404415285
KYVSINSTL	9	Unmodified	_KYVSINSTL_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.8134155273438	2	512.787307	1023.56006	0.34285	0.00017581	0.81232	0.00041655	1.1552	0.00059236	512.7877957739552	42.163	0.40368	42.254	42.037	42.441	0.091362					21	13	2	0	0	0	0.21623	1	9164	9164		21.59	9.9499	1	279410			21556	2160	11916	11917	27768	27768					0.049223232404415285
KYVSSVLSF	9	Unmodified	_KYVSSVLSF_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2390747070312	2	515.2844	1028.55425	0.28298	0.00014581	-0.25514	-0.00013147	0.027835	1.4343E-05	515.2840176991134	55.363	0.69616	55.363	55.061	55.758	0					81	25	4	0	0	0	0.0090577	1	13195	13195		79.596	55.576	1	3237600			21557	8145	11917	11918	27769	27769					0.04111224728740126
KYVSSVLSF	9	Unmodified	_KYVSSVLSF_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2395629882812	2	515.2844	1028.55425	0.9671	0.00049833	0.81302	0.00041893	1.7801	0.00091726	515.2845229811564	55.975	0.34225	55.975	55.732	56.074	0					23	11	3	0	0	0	0.20381	1	13346	13346		23.79	10.747	1	524240			21558	8145	11917	11918	27770	27770					0.04111224728740126
KYVSSVLSF	9	Unmodified	_KYVSSVLSF_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2393188476562	2	515.2844	1028.55425	0.46456	0.00023938	-0.46527	-0.00023975	-0.00071127	-3.6651E-07	515.2839137294321	55.284	0.74976	55.355	55.028	55.777	0.070885					89	27	4	0	0	0	0.0038965	1	13184	13184		110.55	76.151	1	3338300			21559	8145	11917	11918	27771	27771					0.04111224728740126
KYVSSVLSF	9	Unmodified	_KYVSSVLSF_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.239501953125	2	515.2844	1028.55425	0.64717	0.00033348	0.97738	0.00050363	1.6245	0.0008371	515.2847283763164	55.858	0.29613	55.929	55.751	56.048	0.070885					18	10	2	0	0	0	0.20381	1	13329	13329		23.79	5.6434	1	715340			21560	8145	11917	11918	27772	27772					0.04111224728740126
KYVSSVLSF	9	Unmodified	_KYVSSVLSF_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.239501953125	2	515.2844	1028.55425	0.22886	0.00011793	0.043997	2.2671E-05	0.27286	0.0001406	515.2841740061451	55.48	1.0042	55.461	55.155	56.159	-0.019077					86	36	4	0	0	0	0.0027395	1	13258	13258		114.2	78.075	1	3564900			21561	8145	11917	11918	27773	27773					0.04111224728740126
KYVTVYNLI	9	Unmodified	_KYVTVYNLI_					0	0	0		ENSG00000138592|ENST00000307179|USP8;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF	ENSG00000138592|ENST00000307179|USP8	ENSG00000138592|ENST00000307179|USP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.8211059570312	2	556.82115	1111.62775	0.36667	0.00020417	-0.05078	-2.8275E-05	0.31589	0.00017589	556.820893663862	62.66	0.8005	62.66	62.292	63.093	0					100	29	4	0	0	0	0.0073901	2	15466	15466;15539		83.429	31.175	1	3926300			21562	4158	11918	11919	27774;27775	27774					0.07639773171217712
KYVTVYNLI	9	Unmodified	_KYVTVYNLI_					0	0	0		ENSG00000138592|ENST00000307179|USP8;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF	ENSG00000138592|ENST00000307179|USP8	ENSG00000138592|ENST00000307179|USP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8212890625	2	556.82115	1111.62775	0.40781	0.00022708	-0.1563	-8.7032E-05	0.25151	0.00014004	556.8208735853729	62.561	0.816	62.658	62.307	63.123	0.096985					98	29	4	0	0	0	0.0098873	2	15425	15425;15484		79.596	22.121	1	4115100			21563	4158	11918	11919	27776;27777	27776					0.07639773171217712
KYVTVYNLI	9	Unmodified	_KYVTVYNLI_					0	0	0		ENSG00000138592|ENST00000307179|USP8;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF	ENSG00000138592|ENST00000307179|USP8	ENSG00000138592|ENST00000307179|USP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.8209228515625	2	556.82115	1111.62775	0.25635	0.00014274	0.044557	2.481E-05	0.3009	0.00016755	556.8209732116987	62.68	0.82668	62.671	62.278	63.104	-0.0085526					116	30	5	0	0	0	0.0054984	2	15444	15444;15492		86.332	41.421	1	4227500			21564	4158	11918	11919	27778;27779	27778					0.07639773171217712
KYVYVVTEL	9	Unmodified	_KYVYVVTEL_					0	0	0		ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3129272460938	2	557.313158	1112.61176	0.52559	0.00029292	-0.45058	-0.00025112	0.075007	4.1802E-05	557.3128483270793	55.683	1.024	55.683	55.374	56.398	0					96	36	5	0	0	0	0.0069488	1	13378	13378		96.111	67.029	1	6726300			21565	6969	11919	11920	27780	27780					0.05996066934335431
KYVYVVTEL	9	Unmodified	_KYVYVVTEL_					0	0	0		ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	557.313158	1112.61176	0.60554	0.00033748	-0.52032	-0.00028998	0.085228	4.7499E-05	557.3127866055662	55.61	0.9235	55.681	55.371	56.294	0.070885	-0.027398	-6.3436E-05	NaN	96.111	100	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7500500			21566	6969	11919	11920							0.05996066934335431
KYVYVVTEL	9	Unmodified	_KYVYVVTEL_					0	0	0		ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	557.313158	1112.61176	0.55001	0.00030653	-0.41304	-0.00023019	0.13697	7.6336E-05	557.31287404334	55.781	0.91846	55.762	55.46	56.379	-0.019081	0.053278	5.6138E-05	NaN	96.111	95	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7153900			21567	6969	11919	11920							0.05996066934335431
KYWDRNYYMHK	11	Unmodified	_KYWDRNYYMHK_					0	0	0			REV__ENSG00000256053|ENST00000409074|COA8	REV__ENSG00000256053|ENST00000409074|COA8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.830078125	3	535.253999	1602.74017	0.084185	4.506E-05	-0.6404	-0.00034277	-0.55621	-0.00029771	535.2536590530046	27.695	0.51066	27.684	27.469	27.98	-0.01156					34	17	3	0	0	0	0.33348	1	4709	4709		0.40827	0	1	130850	+		21568	19248	11920	11921	27781	27781					-0.03709321094243023
KYWDRNYYMHK	11	Unmodified	_KYWDRNYYMHK_					0	0	0			REV__ENSG00000256053|ENST00000409074|COA8	REV__ENSG00000256053|ENST00000409074|COA8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	535.253999	1602.74017	0.21566	0.00011543	-0.75026	-0.00040158	-0.5346	-0.00028615	535.253889327257	27.702	0.33994	27.702	27.53	27.87	0	0.022715	-0.00035735	NaN	0.40827	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131430	+		21569	19248	11920	11921							-0.03709321094243023
KYWDRNYYMHK	11	Unmodified	_KYWDRNYYMHK_					0	0	0			REV__ENSG00000256053|ENST00000409074|COA8	REV__ENSG00000256053|ENST00000409074|COA8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	535.253999	1602.74017	-0.0053047	-2.8394E-06	-0.32834	-0.00017575	-0.33365	-0.00017859	535.2539131721429	27.674	0.42932	27.653	27.493	27.923	-0.021412	-0.027015	0.00032014	NaN	0.40827	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156730	+		21570	19248	11920	11921							-0.03709321094243023
KYWPENKLD	9	Unmodified	_KYWPENKLD_					0	0	0			REV__nc|ENSG00000095637|Q9BX66-12|SORBS1	REV__nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.8043823242188	2	596.803488	1191.59242	0.46892	0.00027985	1.3732	0.00081952	1.8421	0.0010994	596.8044667526127	74.304	1.4763	74.273	73.584	75.06	-0.030655					119	52	3	0	0	0	0.2719	1	19083	19083		13.042	0.80181	1	742600	+		21571	22907	11921	11922	27782	27782					0.004291106434266112
KYWSPYFL	8	Unmodified	_KYWSPYFL_					0	0	0			REV__nc|ENSG00000147573|Q9BYV6-3|TRIM55	REV__nc|ENSG00000147573|Q9BYV6-3|TRIM55	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8311157226562	2	552.28166	1102.54877	0.58152	0.00032116	0.036891	2.0374E-05	0.61841	0.00034154	552.2816100611856	48.039	0.81591	48.039	47.849	48.665	0					39	28	2	0	0	0	0.33993	1	11119	11119		16.942	0	1	775670	+		21572	16393	11922	11923	27783	27783					0.0015954593693550123
KYYDKKYQVF	10	Unmodified	_KYYDKKYQVF_					0	0	0		nc|ENSG00000172456|Q96C11-6|FGGY;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY;ENST00000493891.5_1_1:60133021-60228256:+|nuORF;ENST00000471169.5_1_1:60139457-60228253:+|nuORF	nc|ENSG00000172456|Q96C11-6|FGGY	nc|ENSG00000172456|Q96C11-6|FGGY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.24334716796875	3	461.243206	1380.70779	0.0018814	8.6778E-07	0.14292	6.5919E-05	0.1448	6.6787E-05	461.24327325907586	34.119	0.90413	34.185	33.875	34.779	0.06636					109	32	4	0	0	0	0.015699	1	6658	6658		76.416	66.652	1	2057500			21573	6634	11923	11924	27784	27784					0.032662147743849346
KYYDKKYQVF	10	Unmodified	_KYYDKKYQVF_					0	0	0		nc|ENSG00000172456|Q96C11-6|FGGY;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY;ENST00000493891.5_1_1:60133021-60228256:+|nuORF;ENST00000471169.5_1_1:60139457-60228253:+|nuORF	nc|ENSG00000172456|Q96C11-6|FGGY	nc|ENSG00000172456|Q96C11-6|FGGY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.24334716796875	3	461.243206	1380.70779	-0.0017195	-7.9313E-07	0.15591	7.191E-05	0.15419	7.1117E-05	461.2432464064401	34.075	1.2767	34.141	33.879	35.156	0.066704					118	45	5	0	0	0	0.022975	1	6651	6651		68.484	52.945	1	2484200			21574	6634	11923	11924	27785	27785					0.032662147743849346
KYYDKKYQVF	10	Unmodified	_KYYDKKYQVF_					0	0	0		nc|ENSG00000172456|Q96C11-6|FGGY;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY;ENST00000493891.5_1_1:60133021-60228256:+|nuORF;ENST00000471169.5_1_1:60139457-60228253:+|nuORF	nc|ENSG00000172456|Q96C11-6|FGGY	nc|ENSG00000172456|Q96C11-6|FGGY	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	461.243206	1380.70779	-0.29675	-0.00013688	0.3323	0.00015327	0.035546	1.6395E-05	461.2433597215556	34.271	1.1203	34.271	33.997	35.118	0	0.071798	0.00016901	NaN	76.416	111	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2085600			21575	6634	11923	11924							0.032662147743849346
KYYEDNKQFF	10	Unmodified	_KYYEDNKQFF_					0	0	0		nc|ENSG00000184752|Q9UI09-2|NDUFA12;ENSG00000184752|ENST00000327772|NDUFA12	nc|ENSG00000184752|Q9UI09-2|NDUFA12	nc|ENSG00000184752|Q9UI09-2|NDUFA12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.2557373046875	3	461.218949	1380.63502	-0.12244	-5.6471E-05	0.59785	0.00027574	0.47541	0.00021927	461.21942092552973	40.932	0.56392	40.932	40.662	41.225	0					54	20	4	0	0	0	0.31329	1	8784	8784		17.049	5.4172	1	337230			21576	7472	11924	11925	27786	27786					-0.04007539019039541
KYYIRLSLI	9	Unmodified	_KYYIRLSLI_					0	0	0			REV__ENSG00000070886|ENST00000166244|EPHA8	REV__ENSG00000070886|ENST00000166244|EPHA8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.3279418945312	2	584.858067	1167.70158	0.1726	0.00010094	0.11079	6.4794E-05	0.28338	0.00016574	584.8580384995929	94.857	0.18286	94.94	94.86	95.043	0.082779					24	16	2	0	0	0	0.26145	1	25301	25301		2.0598	0	1	133060	+		21577	13739	11925	11926	27787	27787					0.12443741333572689
KYYRQTLLF	9	Unmodified	_KYYRQTLLF_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.3218994140625	2	616.345323	1230.67609	0.1099	6.7738E-05	-1.6163	-0.00099617	-1.5064	-0.00092844	616.3441985408552	46.6	0.71174	46.654	46.326	47.037	0.054375					52	24	3	0	0	0	0.20167	1	10546	10546		29.082	6.3453	1	1375000			21578	2801	11926	11927	27788	27788					0.0699826681113791
LAAAEAKRQ	9	Unmodified	_LAAAEAKRQ_					0	0	0		ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B	ENSG00000078814|ENST00000262873|MYH7B	ENSG00000078814|ENST00000262873|MYH7B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2774658203125	2	479.277441	956.540328	0.31867	0.00015273	-0.019674	-9.4295E-06	0.299	0.0001433	479.27730538761404	74.074	3.3857	74.044	73.152	76.538	-0.030663					252	123	3	0	0	0	0.31038	1	19252	19252		7.2892	0	1	4993700			21579	1120	11927	11928	27789	27789					0.06031992020314192
LAAAHRGAIRA	11	Unmodified	_LAAAHRGAIRA_					0	0	0		nc|ENSG00000198920|Q2KHM9-2|KIAA0753;ENSG00000198920|ENST00000361413|KIAA0753	nc|ENSG00000198920|Q2KHM9-2|KIAA0753	nc|ENSG00000198920|Q2KHM9-2|KIAA0753	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.830078125	2	553.830706	1105.64686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.396	1	90.396	89.896	90.896	0.0003891								0	0	0	0.36137	1	23947	23947		5.7319	0	1				21580	8161	11928	11929	27790	27790					0.09826167305504896
LAAAKSRR	8	Unmodified	_LAAAKSRR_					0	0	0		ENST00000374677.7_1_6:33170845-33171339:+|nuORF	ENST00000374677.7_1_6:33170845-33171339:+|nuORF	ENST00000374677.7_1_6:33170845-33171339:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.7749328613281	2	436.774868	871.535184	0.0090301	3.9441E-06	-0.51165	-0.00022347	-0.50262	-0.00021953	436.7747241669577	80.576	1.9931	80.55	80.114	82.107	-0.026825					188	80	3	0	0	0	0.44389	1	20861	20861		7.9102	2.6795	1	20348000			21581	9897	11929	11930	27791	27791					0.09427732948370249
LAAALELCL	9	Unmodified	_LAAALELCL_					0	0	0			REV__ENSG00000277150|ENST00000622749|F8A3	REV__ENSG00000277150|ENST00000622749|F8A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.2134094238281	2	458.762246	915.50994	0.36265	0.00016637	0.0039689	1.8208E-06	0.36662	0.00016819	458.76201161320466	60.515	0.38224	60.611	60.369	60.751	0.09639					17	13	2	0	0	0	0.20279	1	14757	14757		8.5933	0	1	250230	+		21582	19341	11930	11931	27792	27792					0.048804973108985905
LAAARASRP	9	Unmodified	_LAAARASRP_					0	0	0		ENST00000377833.8_1_10:16982036-16982108:-|nuORF	ENST00000377833.8_1_10:16982036-16982108:-|nuORF	ENST00000377833.8_1_10:16982036-16982108:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7723693847656	2	456.772326	911.530098	0.16868	7.7048E-05	-0.27619	-0.00012615	-0.10751	-4.9107E-05	456.772225395566	79.764	1.6598	79.825	79.141	80.801	0.061417					173	66	5	0	0	0	0.31417	1	20604	20604		6.7232	0	1	7989000			21583	9946	11931	11932	27793	27793					0.07079429085740685
LAAARASRP	9	Unmodified	_LAAARASRP_					0	0	0		ENST00000377833.8_1_10:16982036-16982108:-|nuORF	ENST00000377833.8_1_10:16982036-16982108:-|nuORF	ENST00000377833.8_1_10:16982036-16982108:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7727355957031	2	456.772326	911.530098	0.082688	3.7769E-05	-0.476	-0.00021742	-0.39331	-0.00017965	456.772410083877	82.167	1.3484	82.236	81.675	83.023	0.068993					126	55	4	0	0	0	0.29638	1	21412	21412		9.3831	2.66	1	446030			21584	9946	11931	11932	27794	27794					0.07079429085740685
LAAARASRP	9	Unmodified	_LAAARASRP_					0	0	0		ENST00000377833.8_1_10:16982036-16982108:-|nuORF	ENST00000377833.8_1_10:16982036-16982108:-|nuORF	ENST00000377833.8_1_10:16982036-16982108:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7723388671875	2	456.772326	911.530098	0.20085	9.1745E-05	-0.32098	-0.00014662	-0.12013	-5.4871E-05	456.7722224287445	79.847	2.635	79.818	78.25	80.885	-0.028931					217	101	4	0	0	0	0.31417	1	20888	20888		6.7232	0	1	10203000			21585	9946	11931	11932	27795	27795					0.07079429085740685
LAAAREQAK	9	Unmodified	_LAAAREQAK_					0	0	0		ENST00000474216.5_1_1:11126777-11137033:-|nuORF	ENST00000474216.5_1_1:11126777-11137033:-|nuORF	ENST00000474216.5_1_1:11126777-11137033:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2774963378906	2	479.277441	956.540328	0.39285	0.00018828	-0.28276	-0.00013552	0.11009	5.2763E-05	479.2772159021679	75.409	1.3658	75.378	75.005	76.37	-0.031487					98	50	2	0	0	0	0.29638	1	19647	19647		9.3831	0	1	2627700			21586	10918	11932	11933	27796	27796					0.06031992020314192
LAAARLHSG	9	Unmodified	_LAAARLHSG_					0	0	0			REV__ENST00000315367.3_1_8:96146046-96166295:+|nuORF	REV__ENST00000315367.3_1_8:96146046-96166295:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.25921630859375	2	448.259051	894.503549	0.28557	0.00012801	-0.29139	-0.00013062	-0.0058187	-2.6083E-06	448.25888225530827	79.849	1.0832	79.82	79.418	80.502	-0.028923					102	38	4	0	0	0	0.33276	1	20836	20836		3.9444	0	1	6960500	+		21587	19929	11933	11934	27797	27797					0.05207740194418875
LAAARPRN	8	Unmodified	_LAAARPRN_					0	0	0			REV__nc|nan|Q2M2W7-2|C17orf58	REV__nc|nan|Q2M2W7-2|C17orf58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7592468261719	2	434.759218	867.503883	0.18568	8.0724E-05	-0.024381	-1.06E-05	0.16129	7.0124E-05	434.75923325651956	77.389	2.1331	77.389	76.643	78.776	0					206	79	5	0	0	0	0.4397	3	19945	19945;20028;20073		9.3474	0.75416	1	11154000	+		21588	18460	11934	11935	27798;27799;27800	27798					0.06483159914273529
LAAARPRN	8	Unmodified	_LAAARPRN_					0	0	0			REV__nc|nan|Q2M2W7-2|C17orf58	REV__nc|nan|Q2M2W7-2|C17orf58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7590637207031	2	434.759218	867.503883	0.24792	0.00010779	-0.14645	-6.3671E-05	0.10147	4.4115E-05	434.75918576431127	77.367	1.9844	77.423	76.642	78.627	0.05542					176	71	5	0	0	0	0.4397	4	19878	19878;19929;19973;20062		9.3474	0.75416	1	10874000	+		21589	18460	11934	11935	27801;27802;27803;27804	27801					0.06483159914273529
LAAARPRN	8	Unmodified	_LAAARPRN_					0	0	0			REV__nc|nan|Q2M2W7-2|C17orf58	REV__nc|nan|Q2M2W7-2|C17orf58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7591552734375	2	434.759218	867.503883	0.33753	0.00014675	-0.21702	-9.4352E-05	0.12051	5.2394E-05	434.7591325606202	77.432	2.043	77.401	76.754	78.797	-0.031334					181	75	5	0	0	0	0.4397	4	19935	19935;19977;20020;20069		9.3474	0.75416	1	11060000	+		21590	18460	11934	11935	27805;27806;27807;27808	27805					0.06483159914273529
LAAARPRN	8	Unmodified	_LAAARPRN_					0	0	0			REV__nc|nan|Q2M2W7-2|C17orf58	REV__nc|nan|Q2M2W7-2|C17orf58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.759033203125	2	434.759218	867.503883	-0.038131	-1.6578E-05	-0.20192	-8.7788E-05	-0.24005	-0.00010437	434.7591884155941	79.91	1.5855	79.882	79.226	80.812	-0.028923					103	58	3	0	0	0	0.4397	1	20696	20696		9.3474	1.4373	1	731140	+		21591	18460	11934	11935	27809	27809					0.06483159914273529
LAAARPRN	8	Unmodified	_LAAARPRN_					0	0	0			REV__nc|nan|Q2M2W7-2|C17orf58	REV__nc|nan|Q2M2W7-2|C17orf58	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	434.759218	867.503883	-0.038131	-1.6578E-05	-0.20192	-8.7788E-05	-0.24005	-0.00010437	434.7591884155941	79.91	1.5855	79.882	79.226	80.812	-0.028923	-0.011794	-3.8681E-06	NaN	9.3474	103	58	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	731140	+		21592	18460	11934	11935							0.06483159914273529
LAAARSRSV	9	Unmodified	_LAAARSRSV_					0	0	0			REV__nc|ENSG00000183496|Q6ZN04-3|MEX3B	REV__nc|ENSG00000183496|Q6ZN04-3|MEX3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7774353027344	2	465.777608	929.540663	0.29394	0.00013691	-0.13788	-6.4221E-05	0.15606	7.2688E-05	465.7774408601235	71.615	3.3981	71.588	70.637	74.035	-0.027275					249	122	4	0	0	0	0.31417	1	18238	18238		6.7232	6.7232	1	3172700	+		21593	23131	11935	11936	27810	27810					0.07307411740180214
LAACHPGAF	9	Unmodified	_LAACHPGAF_					0	0	0		ENST00000418411.6_1_12:113540888-113573291:-|nuORF;nc|ENSG00000111344|O95294-2|RASAL1;nc|ENSG00000111344|O95294|RASAL1;ENSG00000111344|ENST00000548055|RASAL1;nc|ENSG00000111344|O95294-3|RASAL1	ENST00000418411.6_1_12:113540888-113573291:-|nuORF	ENST00000418411.6_1_12:113540888-113573291:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.2792053222656	2	443.71563	885.416708	0.09616	4.2668E-05	-0.57943	-0.0002571	-0.48326	-0.00021443	443.71542530165965	33.494	0.32918	33.56	33.328	33.657	0.066704					15	11	2	0	0	0	0.25291	1	6460	6460		9.3474	2.9933	1	61178			21594	2363	11936	11937	27811	27811					-0.030583823516508346
LAAGLGYGLLG	11	Unmodified	_LAAGLGYGLLG_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.8105163574219	2	502.792392	1003.57023	0.68476	0.00034429	0.53208	0.00026753	1.2168	0.00061182	502.7927830332293	54.821	0.40135	54.805	54.605	55.006	-0.015923					26	14	3	0	0	0	0.28146	1	13009	13009		28.487	6.7402	1	382220			21595	5202	11937	11938	27812	27812					0.06858930965677246
LAAHSIATTL	10	Unmodified	_LAAHSIATTL_					0	0	0		nc|ENSG00000138400|Q5I0G3-3|MDH1B;nc|ENSG00000138400|Q5I0G3-2|MDH1B;ENSG00000138400|ENST00000374412|MDH1B	nc|ENSG00000138400|Q5I0G3-3|MDH1B	nc|ENSG00000138400|Q5I0G3-3|MDH1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2718811035156	2	499.287474	996.560395	0.63556	0.00031733	1.4422	0.00072005	2.0777	0.0010374	499.28799989855787	47.943	0.8614	47.943	47.745	48.606	0					65	30	3	0	0	0	0.15638	2	11020	11020;11067		37.974	5.6685	1	4466900			21596	4147	11938	11939	27813;27814	27813					0.061977429602734446
LAAHSIATTL	10	Unmodified	_LAAHSIATTL_					0	0	0		nc|ENSG00000138400|Q5I0G3-3|MDH1B;nc|ENSG00000138400|Q5I0G3-2|MDH1B;ENSG00000138400|ENST00000374412|MDH1B	nc|ENSG00000138400|Q5I0G3-3|MDH1B	nc|ENSG00000138400|Q5I0G3-3|MDH1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2715759277344	2	499.287474	996.560395	0.56495	0.00028207	1.4404	0.00071917	2.0053	0.0010012	499.28798501069286	47.894	0.89367	47.937	47.72	48.614	0.04332					75	33	3	0	0	0	0.15638	1	11017	11017		37.974	1.847	1	5211200			21597	4147	11938	11939	27815	27815					0.061977429602734446
LAAKVAISI	9	Unmodified	_LAAKVAISI_					0	0	0			REV__ENST00000490386.1_1_3:45043050-45072340:+|nuORF	REV__ENST00000490386.1_1_3:45043050-45072340:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7998962402344	2	443.292028	884.569503	0.111	4.9205E-05	0.13488	5.9791E-05	0.24588	0.000109	443.2920309183836	52.422	0.39341	52.421	52.246	52.639	-0.00081253					28	13	3	0	0	0	0.12743	1	12346	12346		46.021	5.5724	1	294280	+		21598	13820	11939	11940	27816	27816					0.12260136316615444
LAALKLITL	9	Unmodified	_LAALKLITL_					0	0	0			REV__ENST00000456760.1_1_9:125448634-125449186:+|nuORF	REV__ENST00000456760.1_1_9:125448634-125449186:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2763977050781	2	478.331153	954.647754	0.0076669	3.6673E-06	0.0041779	1.9984E-06	0.011845	5.6658E-06	478.33114929494246	65.488	0.59095	65.488	65.017	65.608	0					24	20	2	0	0	0	0.23783	1	16223	16223		18.135	2.2878	1	93154	+		21599	21174	11940	11941	27817	27817					0.16861568901833834
LAALPRLR	8	Unmodified	_LAALPRLR_					0	0	0			REV__ENST00000479589.5_1_1:212606267-212617713:+|nuORF	REV__ENST00000479589.5_1_1:212606267-212617713:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2922058105469	2	455.303262	908.59197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.866	1	40.966	40.466	41.466	0.099407								0	0	0	0.3683	1	8747	8747		6.3541	0	1		+		21600	14987	11941	11942	27818	27818					0.1340178050487566
LAALWMLL	8	Unmodified	_LAALWMLL_					0	0	0		nc|ENSG00000145536|Q8TE57-2|ADAMTS16;ENSG00000145536|ENST00000274181|ADAMTS16	nc|ENSG00000145536|Q8TE57-2|ADAMTS16	nc|ENSG00000145536|Q8TE57-2|ADAMTS16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.77734375	2	465.777699	929.540846	-0.017051	-7.942E-06	-0.14961	-6.9685E-05	-0.16666	-7.7627E-05	465.7775281831673	73.055	2.0365	73.055	72.667	74.703	0					190	71	4	0	0	0	0.45851	1	18877	18877		2.8892	0	1	1962000			21601	4657	11942	11943	27819	27819					0.07325695415806877
LAAPLRHAER	10	Unmodified	_LAAPLRHAER_					0	0	0		ENSG00000150471|ENST00000683033|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3297119140625	2	567.330539	1132.64652	0.26897	0.0001526	-0.44866	-0.00025454	-0.17969	-0.00010194	567.3300574984545	80.382	2.87	80.447	78.587	81.457	0.065102					380	122	5	0	0	0	0.38773	1	21147	21147		5.7319	0	1	6235000			21602	4911	11943	11944	27820	27820					0.08550747585650242
LAAREIKPS	9	Unmodified	_LAAREIKPS_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.269287109375	2	492.795466	983.57638	0.48674	0.00023986	-0.65221	-0.00032141	-0.16547	-8.1543E-05	492.79520253970776	39.822	0.59828	39.914	39.577	40.176	0.09267					37	20	3	0	0	0	0.24688	1	8488	8488		3.2813	0	1	366830	+		21603	13717	11944	11945	27821	27821					0.08393449197171776
LAARLSRPAGN	11	Unmodified	_LAARLSRPAGN_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.2884521484375	2	563.327996	1124.64144	0.48147	0.00027122	2.2283	0.0012553	2.7098	0.0015265	563.3290962156278	45.436	0.37536	45.436	45.291	45.666	0					19	13	2	0	0	0	0.32855	1	10168	10168		10.8	3.5103	1	230680	+		21604	18733	11945	11946	27822	27822					0.08410443723050776
LAARPFIAI	9	Unmodified	_LAARPFIAI_					0	0	0			REV__ENST00000448782.5_1_2:178128165-178128255:-|nuORF	REV__ENST00000448782.5_1_2:178128165-178128255:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.3050231933594	2	486.30547	970.596387	0.34118	0.00016592	-0.528	-0.00025677	-0.18682	-9.0854E-05	486.30524366570876	69.037	1.3816	69.109	68.618	69.999	0.071938					142	49	5	0	0	0	0.12846	1	17531	17531		34.102	1.797	1	10203000	+		21605	20665	11946	11947	27823	27823					0.10991244927777188
LAATRRDK	8	Unmodified	_LAATRRDK_					0	0	0			REV__nc|ENSG00000160282|O95954-2|FTCD	REV__nc|ENSG00000160282|O95954-2|FTCD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.77752685546875	2	465.777608	929.540663	0.29394	0.00013691	-0.13788	-6.4221E-05	0.15606	7.2688E-05	465.7774408601235	71.615	3.3981	71.588	70.637	74.035	-0.027275					249	122	4	0	0	0	0.45307	1	18141	18141		4.756	4.756	1	3172700	+		21606	23051	11947	11948	27824	27824					0.07307411740168845
LAATYIIF	8	Unmodified	_LAATYIIF_					0	0	0			REV__ENSG00000278195|ENST00000610913|SSTR3	REV__ENSG00000278195|ENST00000610913|SSTR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.793212890625	2	456.265479	910.516405	-0.55825	-0.00025471	0.22072	0.00010071	-0.33753	-0.000154	456.2653245055839	34.627	0.77651	34.704	34.39	35.167	0.077377					50	27	3	0	0	0	0.34046	1	6788	6788		9.3474	3.587	1	508820	+		21607	19346	11948	11949	27825	27825					0.05756758533948414
LAAVLKPV	8	Unmodified	_LAAVLKPV_					0	0	0			REV__ENSG00000175445|ENST00000650287|LPL	REV__ENSG00000175445|ENST00000650287|LPL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.7634582519531	2	405.776014	809.537475	0.304	0.00012336	-1.3413	-0.00054425	-1.0373	-0.00042089	405.7753319709627	48.018	0.76959	48.066	47.893	48.663	0.047523					43	28	2	0	0	0	0.29855	1	10954	10954		32.117	1.8922	1	609640	+		21608	17890	11949	11950	27826	27826					0.12508768633460932
LAAVMGALLMP	11	Unmodified	_LAAVMGALLMP_					0	0	0		nc|ENSG00000125731|Q9BRG2-2|SH2D3A;ENSG00000125731|ENST00000245908|SH2D3A	nc|ENSG00000125731|Q9BRG2-2|SH2D3A	nc|ENSG00000125731|Q9BRG2-2|SH2D3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2689819335938	2	543.806131	1085.59771	0.64696	0.00035182	2.0306	0.0011043	2.6776	0.0014561	544.3095080315404	88.822	0.35059	88.911	88.77	89.121	0.089592					19	14	2	0	0	0	0.33219	1	23528	23528		3.5965	1.2938	1	206410			21609	3226	11950	11951	27827	27827					0.058333749100484056
LAAVVVGLV	9	Unmodified	_LAAVVVGLV_					0	0	0		nc|ENSG00000064300|P08138-2|NGFR;ENSG00000064300|ENST00000172229|NGFR	nc|ENSG00000064300|P08138-2|NGFR	nc|ENSG00000064300|P08138-2|NGFR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2528381347656	2	420.781296	839.54804	0.053051	2.2323E-05	0.1653	6.9557E-05	0.21835	9.188E-05	420.78136783880933	37.707	0.51576	37.805	37.578	38.093	0.097527					28	18	2	0	0	0	0.15605	1	7758	7758		28.173	7.302	1	205550			21610	785	11951	11952	27828	27828					0.12184751287895779
LAAVVVGLV	9	Unmodified	_LAAVVVGLV_					0	0	0		nc|ENSG00000064300|P08138-2|NGFR;ENSG00000064300|ENST00000172229|NGFR	nc|ENSG00000064300|P08138-2|NGFR	nc|ENSG00000064300|P08138-2|NGFR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	420.781296	839.54804	0.14744	6.2039E-05	0.1034	4.3508E-05	0.25083	0.00010555	420.78110602956474	37.822	0.50203	37.822	37.532	38.034	0	0.011257	-1.9299E-05	NaN	14.582	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230090			21611	785	11951	11952							0.12184751287895779
LAAVVVGLV	9	Unmodified	_LAAVVVGLV_					0	0	0		nc|ENSG00000064300|P08138-2|NGFR;ENSG00000064300|ENST00000172229|NGFR	nc|ENSG00000064300|P08138-2|NGFR	nc|ENSG00000064300|P08138-2|NGFR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	420.781296	839.54804	0.10608	4.4635E-05	0.090491	3.8077E-05	0.19657	8.2712E-05	420.7813295585362	37.714	0.54492	37.805	37.638	38.183	0.090881	-0.0055003	-3.016E-05	NaN	14.582	32	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209190			21612	785	11951	11952							0.12184751287895779
LAAYTSTVV	9	Unmodified	_LAAYTSTVV_					0	0	0		ENST00000550861.1_1_12:50236507-50236870:-|nuORF	ENST00000550861.1_1_12:50236507-50236870:-|nuORF	ENST00000550861.1_1_12:50236507-50236870:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.7560119628906	2	462.755475	923.496398	0.083735	3.8749E-05	1.2262	0.00056742	1.3099	0.00060617	462.7560495723364	48.84	1.079	48.872	48.549	49.628	0.032043					73	38	2	0	0	0	0.1669	1	11292	11292		28.487	1.6032	1	1043900			21613	11799	11952	11953	27829	27829					0.031589628033202644
LAAYVNPIF	9	Unmodified	_LAAYVNPIF_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.29229736328125	2	504.28166	1006.54877	0.31142	0.00015704	-0.23754	-0.00011979	0.073882	3.7258E-05	504.2807598022638	76.598	1.128	76.598	76.021	77.149	0					83	40	3	0	0	0	0.24739	1	19843	19843		8.5933	8.5933	1	287760	+		21614	17138	11953	11954	27830	27830					0.045755459369502205
LAAYVNPIF	9	Unmodified	_LAAYVNPIF_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	504.28166	1006.54877	0.47677	0.00024043	-0.52419	-0.00026434	-0.04742	-2.3913E-05	504.28065369365976	76.617	0.96319	76.585	76.109	77.072	-0.031487	-0.0010036	-2.6931E-05	NaN	8.5933	58	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249520	+		21615	17138	11953	11954							0.045755459369502205
LACILQLHYF	10	Unmodified	_LACILQLHYF_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5797119140625	3	407.554727	1219.64235	-0.45921	-0.00018715	3.421	0.0013943	2.9618	0.0012071	407.5558656417711	38.797	0.2815	38.797	38.649	38.931	0					13	9	2	0	0	0	0.318	1	8107	8107		0.69767	0	1	79703			21616	1828	11954	11955	27831	27831					0.041315220477144976
LACLHHLQN	9	Unmodified	_LACLHHLQN_					0	0	0		nc|ENSG00000105341|Q9NW81-5|DMAC2;ENSG00000105341|ENST00000221943|DMAC2;nc|ENSG00000105341|Q9NW81-4|DMAC2	nc|ENSG00000105341|Q9NW81-5|DMAC2	nc|ENSG00000105341|Q9NW81-5|DMAC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7825927734375	2	524.771468	1047.52838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.745	1	20.635	20.135	21.135	-0.11003								0	0	0	0.2575	1	2633	2633		3.9444	1.3669	1				21617	1968	11955	11956	27832	27832					0.006520520054891676
LACRYFIFH	9	Unmodified	_LACRYFIFH_					0	0	0			REV__ENST00000241416.11_1_2:148602438-148602555:+|nuORF	REV__ENST00000241416.11_1_2:148602438-148602555:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8143920898438	2	585.299862	1168.58517	-0.066307	-3.8809E-05	1.1731	0.00068662	1.1068	0.00064781	585.3005453789782	25.082	0.31828	25.051	24.89	25.209	-0.031408					17	10	3	0	0	0	0.25938	1	3955	3955		4.3292	0.38484	1	45410	+		21618	19492	11956	11957	27833	27833					0.00762099562007279
LACWDHGPI	9	Unmodified	_LACWDHGPI_					0	0	0			REV__ALLC|p.V63A|1|0.23|ENSG00000151360|chr2:3679884-3679884|T/C|missense_variant	REV__ALLC|p.V63A|1|0.23|ENSG00000151360|chr2:3679884-3679884|T/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.3155822753906	2	506.23947	1010.46439	0.39922	0.0002021	0.4255	0.0002154	0.82472	0.0004175	506.23949762914805	89.108	0.53591	89.107	88.852	89.387	-0.00080872					31	23	2	0	0	0	0.25417	1	23506	23506		8.5933	1.304	1	156810	+		21619	13098	11957	11958	27834	27834					-0.040427281514553215
LADLEDSNIF	10	Unmodified	_LADLEDSNIF_					0	0	0		nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-4|GRB10;ENSG00000106070|ENST00000401949|GRB10	nc|ENSG00000106070|Q13322-3|GRB10	nc|ENSG00000106070|Q13322-3|GRB10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.8229370117188	2	568.777136	1135.53972	0.10255	5.8327E-05	-0.60551	-0.0003444	-0.50296	-0.00028607	568.7766463049136	59.557	0.54718	59.557	59.297	59.844	0					23	18	2	0	0	0	0.26638	1	14570	14570		30.637	16.73	1	221430			21620	2055	11958	11959	27835	27835					-0.02262892210069367
LADQGLRVR	9	Unmodified	_LADQGLRVR_					0	0	0			REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.3036499023438	2	514.30399	1026.59343	-0.08343	-4.2908E-05	-0.21628	-0.00011123	-0.29971	-0.00015414	514.3039077914316	30.001	0.46922	30.025	29.809	30.278	0.024288					35	15	3	0	0	0	0.29638	1	5453	5453		9.3831	1.473	1	234860	+		21621	19137	11959	11960	27836	27836					0.0811936980298924
LADQGLRVR	9	Unmodified	_LADQGLRVR_					0	0	0			REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	514.30399	1026.59343	0.43875	0.00022565	-0.65308	-0.00033588	-0.21433	-0.00011023	514.3036101499026	30.045	0.53421	30.045	29.774	30.309	0	0.015342	-0.00022606	NaN	9.3831	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224390	+		21622	19137	11959	11960							0.0811936980298924
LADQGLRVR	9	Unmodified	_LADQGLRVR_					0	0	0			REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	514.30399	1026.59343	0.30478	0.00015675	-0.3217	-0.00016545	-0.016915	-8.6994E-06	514.303718427652	30.006	0.59211	30.018	29.746	30.338	0.012266	-0.011232	0.0001148	NaN	9.3831	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235620	+		21623	19137	11959	11960							0.0811936980298924
LADQGLRVR	9	Unmodified	_LADQGLRVR_					0	0	0			REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	514.30399	1026.59343	-0.08343	-4.2908E-05	-0.21628	-0.00011123	-0.29971	-0.00015414	514.3039077914316	30.001	0.46922	30.025	29.809	30.278	0.024288	-0.00411	0.00022323	NaN	9.3831	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234860	+		21624	19137	11959	11960							0.0811936980298924
LAEALVGDPD	10	Unmodified	_LAEALVGDPD_					0	0	0			REV__ENSG00000139714|ENST00000355329|MORN3	REV__ENSG00000139714|ENST00000355329|MORN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7848815917969	2	500.253297	998.492041	0.33276	0.00016646	3.9092	0.0019556	4.2419	0.002122	500.25488984780526	52.913	0.26644	52.904	52.737	53.004	-0.0096054					11	9	2	0	0	0	0.31267	1	12399	12399		14.838	4.0143	1	109470	+		21625	16003	11960	11961	27837	27837					-0.007265464102374608
LAEEYEESEI	10	Unmodified	_LAEEYEESEI_					0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.9154052734375	3	404.515319	1210.52413	-0.34634	-0.0001401	-1.2253	-0.00049563	-1.5716	-0.00063573	404.51499982149477	16.634	0.80195	16.52	16.166	16.968	-0.11434					73	28	4	0	0	0	0.32009	1	1492	1492		1.9064	0.31409	1	537500	+		21626	16557	11961	11962	27838	27838					-0.07271223517750514
LAEKYGLTL	9	Unmodified	_LAEKYGLTL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.L2113Dfs*17|1|0.07|ENSG00000197321|chr10:29462341-29462342|AG/-|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2921142578125	2	504.292225	1006.5699	0.62702	0.0003162	1.1808	0.00059549	1.8079	0.00091169	504.2918278946427	77.028	1.6104	76.996	76.423	78.033	-0.031334					133	58	3	0	0	0	0.22596	1	19823	19823		21.747	0	1	390240			21627	7952	11962	11963	27839	27839					0.06687511245809219
LAENATDAVF	10	Unmodified	_LAENATDAVF_					0	0	0			REV__ENST00000307241.5_1_12:94942028-94943309:+|nuORF	REV__ENST00000307241.5_1_12:94942028-94943309:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7590942382812	2	525.758746	1049.50294	0.4998	0.00026277	-0.16976	-8.9255E-05	0.33003	0.00017352	525.7586768252038	19.76	2.0681	19.644	18.762	20.83	-0.11592					211	73	6	0	0	0	0.41242	1	2108	2108		1.1933	0	1	2550200	+		21628	17706	11963	11964	27840	27840					-0.019831440359666885
LAEPEGPRPW	10	Unmodified	_LAEPEGPRPW_					0	0	0			REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1	REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2942504882812	2	576.29583	1150.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.78	1	110.79	110.29	111.29	0.01152								0	0	0	0.36922	1	28900	28900		6.7232	2.3939	1		+		21629	23222	11964	11965	27841	27841					0.007842438462375867
LAEPPPALTK	10	Unmodified	_LAEPPPALTK_					0	0	0			REV__ENSG00000185972|ENST00000335119|CCIN	REV__ENSG00000185972|ENST00000335119|CCIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.28466796875	2	518.8055	1035.59645	0.36196	0.00018779	-0.71085	-0.00036879	-0.34889	-0.00018101	518.8048825103278	43.598	0.48986	43.598	43.388	43.878	0					31	17	3	0	0	0	0.3144	1	9541	9541		5.2969	3.6443	1	370080	+		21630	18425	11965	11966	27842	27842					0.08007200137126347
LAEPPPALTK	10	Unmodified	_LAEPPPALTK_					0	0	0			REV__ENSG00000185972|ENST00000335119|CCIN	REV__ENSG00000185972|ENST00000335119|CCIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2847290039062	2	518.8055	1035.59645	0.50651	0.00026278	-0.43282	-0.00022455	0.073689	3.823E-05	518.8048814728435	43.298	0.46791	43.376	43.1	43.567	0.077515					27	16	2	0	0	0	0.31267	1	9442	9442		10.074	7.1847	1	277370	+		21631	18425	11965	11966	27843	27843					0.08007200137126347
LAEPPPALTK	10	Unmodified	_LAEPPPALTK_					0	0	0			REV__ENSG00000185972|ENST00000335119|CCIN	REV__ENSG00000185972|ENST00000335119|CCIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2848510742188	2	518.8055	1035.59645	0.30068	0.00015599	-0.60049	-0.00031154	-0.29982	-0.00015555	518.8047423429728	43.236	0.43399	43.32	43.115	43.549	0.083996					29	15	3	0	0	0	0.3144	1	9428	9428		8.7454	7.2635	1	287330	+		21632	18425	11965	11966	27844	27844					0.08007200137126347
LAEQFLVPS	9	Unmodified	_LAEQFLVPS_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.29278564453125	2	502.276575	1002.5386	0.20631	0.00010363	-2.9462	-0.0014798	-2.7399	-0.0013762	502.2751635046157	16.276	0.3388	16.276	16.123	16.461	0					18	11	2	0	0	0	0.25323	1	1242	1242		10.074	0	1	31150	+		21633	17534	11966	11967	27845	27845					0.037429382117238674
LAERNAIML	9	Unmodified	_LAERNAIML_					0	0	0		ENST00000374023.7_2_6:34557337-34557511:-|nuORF	ENST00000374023.7_2_6:34557337-34557511:-|nuORF	ENST00000374023.7_2_6:34557337-34557511:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2720947265625	2	515.789327	1029.5641	0.58114	0.00029975	-1.9879	-0.0010253	-1.4068	-0.00072559	515.7884379295604	47.44	0.42319	47.484	47.401	47.824	0.04332					29	15	2	0	0	0	0.1854	1	10829	10829		25.399	0	1	452450			21634	9885	11967	11968	27846	27846					0.050500894624974535
LAEYLFKN	8	Unmodified	_LAEYLFKN_					0	0	0		ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2870178222656	2	499.271293	996.528032	0.28317	0.00014138	-3.4697	-0.0017323	-3.1866	-0.001591	499.26977433680156	41.188	0.40293	41.278	41.079	41.482	0.090252					23	14	2	0	0	0	0.37937	1	8889	8889		21.747	1.3321	1	236800			21635	4280	11968	11969	27847	27847					0.02962955557291025
LAEYLFKN	8	Unmodified	_LAEYLFKN_					0	0	0		ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.28802490234375	2	499.271293	996.528032	0.20132	0.00010051	-3.2261	-0.0016107	-3.0248	-0.0015102	499.2700025726767	41.136	0.51292	41.233	40.909	41.422	0.096622					25	18	2	0	0	0	0.32886	1	8859	8859		21.747	2.3076	1	224690			21636	4280	11968	11969	27848	27848					0.02962955557291025
LAFDSVFLR	9	Unmodified	_LAFDSVFLR_					0	0	0		ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	ENSG00000168434|ENST00000307149|COG7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.31005859375	2	534.297842	1066.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.435	1	68.507	68.007	69.007	0.071938								0	0	0	0.171	1	17236	17236		29.841	3.4993	1				21637	6274	11969	11970	27849	27849					0.05050333339931967
LAFFRRKWS	9	Unmodified	_LAFFRRKWS_					0	0	0			REV__ENST00000521382.1_1_8:38809812-38818359:+|nuORF	REV__ENST00000521382.1_1_8:38809812-38818359:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.8511657714844	3	404.232975	1209.6771	-0.49011	-0.00019812	1.8649	0.00075387	1.3748	0.00055575	404.23400629212455	13.027	0.40336	12.928	12.814	13.217	-0.099291					15	13	2	0	0	0	0.26228	1	329	329		1.1933	0	1	14319	+		21638	17520	11970	11971	27850	27850					0.08064525970712566
LAFFRRKWS	9	Unmodified	_LAFFRRKWS_					0	0	0			REV__ENST00000521382.1_1_8:38809812-38818359:+|nuORF	REV__ENST00000521382.1_1_8:38809812-38818359:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	404.232975	1209.6771	-0.53065	-0.00021451	2.0844	0.00084259	1.5538	0.00062808	404.2340326130798	13.027	0.33759	12.96	12.878	13.215	-0.067496	0.01603	0.00016128	NaN	1.1933	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13481	+		21639	17520	11970	11971							0.08064525970712566
LAFGAFTNPF	10	Unmodified	_LAFGAFTNPF_					0	0	0		ENSG00000106351|ENST00000300176|AGFG2	ENSG00000106351|ENST00000300176|AGFG2	ENSG00000106351|ENST00000300176|AGFG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8477172851562	2	542.776742	1083.53893	0.46507	0.00025243	-2.5244	-0.0013702	-2.0593	-0.0011178	543.2774021317598	42.461	0.41188	42.552	42.441	42.853	0.091362					23	14	2	0	0	0	0.27772	1	9221	9221		20.454	3.011	1	125370			21640	2074	11971	11972	27851	27851					0.0005035793155911961
LAFLFSPLRTW	11	Unmodified	_LAFLFSPLRTW_					0	0	0		ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.92327880859375	3	450.923807	1349.74959	0.25723	0.00011599	-0.56428	-0.00025445	-0.30705	-0.00013846	450.92341761939247	17.278	0.52711	17.218	16.945	17.472	-0.060429					41	18	3	0	0	0	0.44966	1	1560	1560		4.7159	0.30977	1	119870			21641	4087	11972	11973	27852	27852					0.08870815253590081
LAFLFSPLRTW	11	Unmodified	_LAFLFSPLRTW_					0	0	0		ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	450.923807	1349.74959	0.17544	7.9111E-05	-0.50835	-0.00022923	-0.33291	-0.00015012	450.9235870587549	17.159	0.44418	17.159	16.952	17.396	0	-0.038468	-3.857E-06	NaN	4.7159	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138640			21642	4087	11972	11973							0.08870815253590081
LAFLFSPLRTW	11	Unmodified	_LAFLFSPLRTW_					0	0	0		ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	450.923807	1349.74959	-0.022277	-1.0045E-05	-0.46121	-0.00020797	-0.48349	-0.00021802	450.92360571426394	17.333	0.44785	17.216	16.993	17.441	-0.11739	0.018305	5.9912E-05	NaN	4.7159	43	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111750			21643	4087	11972	11973							0.08870815253590081
LAFLFSPLRTW	11	Unmodified	_LAFLFSPLRTW_					0	0	0		ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	ENSG00000137842|ENST00000260403|TMEM62	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	450.923807	1349.74959	0.25723	0.00011599	-0.56428	-0.00025445	-0.30705	-0.00013846	450.92341761939247	17.278	0.52711	17.218	16.945	17.472	-0.060429	0.020163	-7.9517E-05	NaN	4.7159	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119870			21644	4087	11972	11973							0.08870815253590081
LAFLLYHI	8	Unmodified	_LAFLLYHI_					0	0	0			REV__ENSG00000177243|ENST00000318124|DEFB103B	REV__ENSG00000177243|ENST00000318124|DEFB103B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2669677734375	2	495.294571	988.574589	0.37505	0.00018576	-1.4625	-0.00072435	-1.0874	-0.00053858	495.2938866940522	16.843	0.52918	16.78	16.414	16.943	-0.062534					28	18	2	0	0	0	0.3439	1	1383	1383		2.8892	0	1	93986	+		21645	17950	11973	11974	27853	27853					0.07984440179222929
LAGALDFLHS	10	Unmodified	_LAGALDFLHS_					0	0	0		ENSG00000231274|ENST00000612221|SBK3	ENSG00000231274|ENST00000612221|SBK3	ENSG00000231274|ENST00000612221|SBK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2982177734375	2	522.279649	1042.54475	0.52151	0.00027237	0.72286	0.00037754	1.2444	0.00064991	522.2800284315122	52.713	0.69307	52.713	52.267	52.96	0					31	24	2	0	0	0	0.24715	1	12367	12367		26.884	0	1	306550			21646	8470	11974	11975	27854	27854					0.025174564432290936
LAGALDFLHS	10	Unmodified	_LAGALDFLHS_					0	0	0		ENSG00000231274|ENST00000612221|SBK3	ENSG00000231274|ENST00000612221|SBK3	ENSG00000231274|ENST00000612221|SBK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.279649	1042.54475	0.41362	0.00021602	3.7688	0.0019684	4.1824	0.0021844	522.2803223434155	52.824	0.43833	52.823	52.688	53.126	-0.00080872	0.087762	0.0028496	NaN	26.884	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346080			21647	8470	11974	11975							0.025174564432290936
LAGALFVWL	9	Unmodified	_LAGALFVWL_					0	0	0		ENSG00000118804|ENST00000237642|STBD1	ENSG00000118804|ENST00000237642|STBD1	ENSG00000118804|ENST00000237642|STBD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.26629638671875	2	495.294571	988.574589	0.21166	0.00010483	-0.6798	-0.0003367	-0.46814	-0.00023187	495.2941011911103	16.774	0.32847	16.659	16.395	16.723	-0.11434					15	11	2	0	0	0	0.24542	1	1394	1394		9.3474	0	1	74441			21648	2844	11975	11976	27855	27855					0.07984440179222929
LAGEWDQMYL	10	Unmodified	_LAGEWDQMYL_					0	0	0			REV__ENST00000491455.5_1_1:214454597-214505536:+|nuORF	REV__ENST00000491455.5_1_1:214454597-214505536:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.885009765625	3	409.190113	1224.54851	-0.16266	-6.6558E-05	3.7806	0.001547	3.618	0.0014804	409.1912899948491	27.474	0.27782	27.452	27.215	27.493	-0.021412					12	9	2	0	0	0	0.31847	1	4651	4651		3.5871	1.0886	1	37890	+		21649	16185	11976	11977	27856	27856					-0.054782418452077764
LAGIAWFSSMW	11	Unmodified	_LAGIAWFSSMW_					0	0	0		ENST00000381962.3_1_20:628196-628502:-|nuORF	ENST00000381962.3_1_20:628196-628502:-|nuORF	ENST00000381962.3_1_20:628196-628502:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.58575439453125	3	423.542598	1267.60597	-0.14685	-6.2199E-05	0.026846	1.137E-05	-0.12001	-5.0828E-05	423.5427248555443	17.981	0.44528	17.981	17.771	18.216	0					30	14	3	0	0	0	0.33287	1	1823	1823		2.8433	1.251	1	68928			21650	10001	11977	11978	27857	27857					-0.01713354848993731
LAGLFVMVLI	10	Unmodified	_LAGLFVMVLI_					0	0	0		ENST00000585357.1_1_19:38782298-38782643:+|nuORF;nc|ENSG00000167642|O43291-2|SPINT2;ENSG00000167642|ENST00000301244|SPINT2	ENST00000585357.1_1_19:38782298-38782643:+|nuORF	ENST00000585357.1_1_19:38782298-38782643:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.810791015625	2	538.332839	1074.65112	0.26395	0.00014209	0.52739	0.00028391	0.79134	0.000426	538.3331896448879	65.137	2.3331	65.226	63.614	65.947	0.088882					157	85	3	0	0	0	0.28208	1	16024	16024		24.674	24.674	1	1498400			21651	6193	11978	11979	27858	27858					0.11678495684213885
LAGLHLQI	8	Unmodified	_LAGLHLQI_					0	0	0		ENST00000480733.1_1_3:136323173-136342079:-|nuORF	ENST00000480733.1_1_3:136323173-136342079:-|nuORF	ENST00000480733.1_1_3:136323173-136342079:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.21331787109375	2	432.76872	863.522887	-0.0027394	-1.1855E-06	0.13488	5.8371E-05	0.13214	5.7185E-05	432.76865470646777	51.847	0.60545	51.897	51.676	52.282	0.050575					49	21	3	0	0	0	0.3225	1	12154	12154		22.453	1.5814	1	1035200			21652	11013	11979	11980	27859	27859					0.08566696485331704
LAGLHLQI	8	Unmodified	_LAGLHLQI_					0	0	0		ENST00000480733.1_1_3:136323173-136342079:-|nuORF	ENST00000480733.1_1_3:136323173-136342079:-|nuORF	ENST00000480733.1_1_3:136323173-136342079:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.7685852050781	2	432.76872	863.522887	-0.27204	-0.00011773	0.60661	0.00026252	0.33457	0.00014479	432.76883263619794	51.952	0.75957	51.951	51.71	52.469	-0.00080872					56	27	3	0	0	0	0.10409	1	12146	12146		59.795	3.2539	1	846120			21653	11013	11979	11980	27860	27860					0.08566696485331704
LAGLPFAILT	10	Unmodified	_LAGLPFAILT_					0	0	0		ENSG00000067113|ENST00000307259|PLPP1	ENSG00000067113|ENST00000307259|PLPP1	ENSG00000067113|ENST00000307259|PLPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3030090332031	2	508.312961	1014.61137	0.4945	0.00025136	-1.0726	-0.00054521	-0.57809	-0.00029385	508.31244813659475	86.824	1.7371	86.824	86.013	87.75	0					187	72	4	0	0	0	0.33817	1	23100	23100		14.838	0	1	1981400			21654	856	11980	11981	27861	27861					0.10464692005132292
LAGLQPHSP	9	Unmodified	_LAGLQPHSP_					0	0	0			REV__ENSG00000102313|ENST00000218436|ITIH6	REV__ENSG00000102313|ENST00000218436|ITIH6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.26580810546875	2	460.253434	918.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.722	1	42.808	42.308	43.308	0.085197								0	0	0	0.22789	1	9320	9320		13.508	1.8676	1		+		21655	14318	11981	11982	27862	27862					0.029809181002860896
LAGPGEPRQFI	11	Unmodified	_LAGPGEPRQFI_					0	0	0		ENSG00000196456|ENST00000329630|ZNF775	ENSG00000196456|ENST00000329630|ZNF775	ENSG00000196456|ENST00000329630|ZNF775	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.3614501953125	2	592.824755	1183.63496	0.99605	0.00059048	-0.60566	-0.00035905	0.39039	0.00023143	592.8245916799499	50.58	0.32867	50.601	50.465	50.794	0.020691					18	11	2	0	0	0	0.3239	1	11776	11776		17.113	4.0704	1	115220			21656	7866	11982	11983	27863	27863					0.05048505771674172
LAGPQLYLK	9	Unmodified	_LAGPQLYLK_					0	0	0			REV__ENSG00000129566|ENST00000262715|TEP1	REV__ENSG00000129566|ENST00000262715|TEP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7898864746094	2	501.80276	1001.59097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.491	1	14.386	13.886	14.886	-0.10466								0	0	0	0.24522	1	744	744		7.9102	0	1		+		21657	15421	11983	11984	27864	27864					0.09023521345318386
LAGPRKALGK	10	Unmodified	_LAGPRKALGK_					0	0	0			REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.82720947265625	2	505.827101	1009.63965	0.32732	0.00016557	-0.0025856	-1.3079E-06	0.32474	0.00016426	505.82704548041465	40.175	0.71793	40.175	39.858	40.576	0					38	25	2	0	0	0	0.3641	1	8533	8533		10.074	0	1	414730	+		21658	19137	11984	11985	27865	27865					0.13521434705069169
LAGPRKALGK	10	Unmodified	_LAGPRKALGK_					0	0	0			REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	505.827101	1009.63965	0.49577	0.00025078	0.1079	5.4578E-05	0.60367	0.00030535	505.827015054599	39.976	0.56539	40.069	39.777	40.343	0.09267	-0.030561	-8.984E-05	NaN	10.074	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376550	+		21659	19137	11984	11985							0.13521434705069169
LAGPRKALGK	10	Unmodified	_LAGPRKALGK_					0	0	0			REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	505.827101	1009.63965	0.36878	0.00018654	0.4212	0.00021305	0.78998	0.00039959	505.8272404472963	39.956	0.4708	40.055	39.817	40.288	0.099407	-0.044347	0.00022711	NaN	10.074	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352150	+		21660	19137	11984	11985							0.13521434705069169
LAGQKRKHS	9	Unmodified	_LAGQKRKHS_					0	0	0		ENSG00000134013|ENST00000389131|LOXL2	ENSG00000134013|ENST00000389131|LOXL2	ENSG00000134013|ENST00000389131|LOXL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2415161132812	2	512.804157	1023.59376	0.24209	0.00012414	1.9337	0.00099159	2.1758	0.0011157	512.8052483742501	24.085	0.48499	24.046	23.793	24.278	-0.038927					35	16	3	0	0	0	0.25938	1	3667	3667		1.8442	0.36234	1	81506			21661	3747	11985	11986	27866	27866					0.08290789522845898
LAGRVKHIV	9	Unmodified	_LAGRVKHIV_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2;nc|ENSG00000166046|Q8N4U5-2|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.8219909667969	2	496.821818	991.629084	0.72293	0.00035917	0.051453	2.5563E-05	0.77439	0.00038473	496.8218053008617	33.954	0.79961	33.954	33.7	34.5	0					57	28	3	0	0	0	0.22883	1	6674	6674		19.439	4.6007	1	409810			21662	6026	11986	11987	27867	27867					0.13293452050641008
LAGSINKL	8	Unmodified	_LAGSINKL_					0	0	0			REV__ENSG00000052841|ENST00000039989|TTC17	REV__ENSG00000052841|ENST00000039989|TTC17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.75274658203125	2	408.252903	814.491253	0.25192	0.00010285	-2.885	-0.0011778	-2.6331	-0.001075	408.25135926342534	63.846	1.0178	63.837	63.477	64.495	-0.0095329					65	36	3	0	0	0	0.34218	1	15727	15727		5.2307	0	1	141830	+		21663	13574	11987	11988	27868	27868					0.07658703731385685
LAGSSIKGQVI	11	Unmodified	_LAGSSIKGQVI_					0	0	0		ENSG00000205784|ENST00000650722|ARRDC5;nc|ENSG00000205784|A6NEK1|ARRDC5	ENSG00000205784|ENST00000650722|ARRDC5	ENSG00000205784|ENST00000650722|ARRDC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2693481445312	2	536.821681	1071.62881	0.80496	0.00043212	-0.77817	-0.00041774	0.026783	1.4378E-05	536.8216296914864	50.961	0.35366	50.961	50.818	51.172	0					17	12	2	0	0	0	0.31791	1	11879	11879		20.415	3.3016	1	150220			21664	8303	11988	11989	27869	27869					0.09585987540140195
LAGTWDYLD	9	Unmodified	_LAGTWDYLD_					0	0	0			REV__nc|ENSG00000168679|O15374-2|SLC16A4	REV__nc|ENSG00000168679|O15374-2|SLC16A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.8025512695312	2	527.248015	1052.48148	0.4257	0.00022445	-0.45233	-0.00023849	-0.026634	-1.4043E-05	527.247641481346	64.918	1.2885	64.918	64.398	65.686	0					55	46	2	0	0	0	0.23783	1	16195	16195		12.532	3.9383	1	276310	+		21665	17473	11989	11990	27870	27870					-0.042665290646709764
LAGVALLLQI	10	Unmodified	_LAGVALLLQI_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-3|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.26666259765625	2	505.83406	1009.65357	0.69498	0.00035154	-0.4737	-0.00023961	0.22128	0.00011193	505.8337566772785	50.833	0.31679	50.833	50.713	51.03	0					16	11	2	0	0	0	0.31051	1	11854	11854		7.2892	0	1	115290			21666	373	11990	11991	27871	27871					0.14912667413523195
LAGVLQFLI	9	Unmodified	_LAGVLQFLI_					0	0	0		nc|ENSG00000111684|Q6P1A2-2|LPCAT3	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.789794921875	2	487.307678	972.600803	0.59009	0.00028755	-1.8149	-0.0008844	-1.2248	-0.00059685	487.30652001764753	56.896	0.41489	56.877	56.7	57.115	-0.019081					22	14	2	0	0	0	0.22431	1	13703	13703		9.3474	2.6243	1	170390			21667	12650	11991	11992	27872	27872					0.11340709350690759
LAGVRVFLE	9	Unmodified	_LAGVRVFLE_					0	0	0		ENST00000392343.3_2_17:80165699-80170678:-|nuORF	ENST00000392343.3_2_17:80165699-80170678:-|nuORF	ENST00000392343.3_2_17:80165699-80170678:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2826232910156	2	502.300384	1002.58622	0.78928	0.00039646	-0.67889	-0.000341	0.1104	5.5453E-05	502.299999889935	50.656	0.69987	50.656	50.381	51.081	0					56	25	3	0	0	0	0.18803	1	11796	11796		25.399	2.2509	1	727950			21668	10030	11992	11993	27873	27873					0.08502637202570895
LAGVRVFLE	9	Unmodified	_LAGVRVFLE_					0	0	0		ENST00000392343.3_2_17:80165699-80170678:-|nuORF	ENST00000392343.3_2_17:80165699-80170678:-|nuORF	ENST00000392343.3_2_17:80165699-80170678:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2826843261719	2	502.300384	1002.58622	0.82878	0.0004163	-0.91844	-0.00046133	-0.089653	-4.5033E-05	502.29984466299226	50.732	0.58939	50.741	50.426	51.016	0.0095673					38	21	2	0	0	0	0.21303	1	11813	11813		21.747	2.3076	1	662050			21669	10030	11992	11993	27874	27874					0.08502637202570895
LAGWSRPLL	9	Unmodified	_LAGWSRPLL_					0	0	0			REV__ENST00000305784.6_1_2:242615338-242615527:-|nuORF	REV__ENST00000305784.6_1_2:242615338-242615527:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.3499755859375	2	506.800552	1011.58655	0.2206	0.0001118	1.1787	0.00059736	1.3993	0.00070916	506.80123774812176	41.335	0.96181	41.432	40.638	41.6	0.096626					83	35	4	0	0	0	0.24311	1	8834	8834		16.942	4.4107	1	1953200	+		21670	19853	11993	11994	27875	27875					0.08122056922411502
LAHELELAF	9	Unmodified	_LAHELELAF_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8132934570312	2	521.782025	1041.5495	-0.35675	-0.00018615	-1.1892	-0.00062052	-1.546	-0.00080667	521.7808308554525	34.507	0.22962	34.507	34.388	34.618	0					11	7	2	0	0	0	0.25291	1	6842	6842		5.2307	0	1	97178	+		21671	15470	11994	11995	27876	27876					0.030383405859765844
LAHFSLHLYK	10	Unmodified	_LAHFSLHLYK_					0	0	0			REV__ENSG00000160957|ENST00000617875|RECQL4	REV__ENSG00000160957|ENST00000617875|RECQL4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2310791015625	3	410.232752	1227.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.03	1	103.03	102.53	103.53	-0.0011139								0	0	0	0.37048	1	27420	27420		6.1918	2.5992	1		+		21672	16927	11995	11996	27877	27877					0.07169686530983199
LAHIHVHS	8	Unmodified	_LAHIHVHS_					0	0	0			REV__ENST00000477970.1_1_1:44078891-44086093:+|nuORF	REV__ENST00000477970.1_1_1:44078891-44086093:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.60015869140625	2	457.253769	912.492984	-0.24315	-0.00011118	-1.5848	-0.00072467	-1.828	-0.00083585	457.25300590208394	13.241	0.20208	13.174	13.073	13.275	-0.067496					10	6	2	0	0	0	0.34319	1	376	376		5.7604	0	1	26326	+		21673	21443	11996	11997	27878	27878					0.03323757539999406
LAHLFMVL	8	Unmodified	_LAHLFMVL_					0	0	0		ENST00000457388.1_1_10:37627086-37627398:+|nuORF	REV__ENSG00000166133|ENST00000315616|RPUSD2	REV__ENSG00000166133|ENST00000315616|RPUSD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.27642822265625	2	472.275324	942.536095	0.12344	5.8297E-05	2.0872	0.00098574	2.2107	0.001044	472.27635860880184	30.978	0.79459	31.005	30.638	31.433	0.027157					64	28	4	0	0	0	0.41716	1	5819	5819		17.087	2.5049	1	779840			21674	17294	11997	11998	27879	27879					0.06252811273066072
LAHPSIRLF	9	Unmodified	_LAHPSIRLF_					0	0	0		nc|ENSG00000168671|Q3SY77-2|UGT3A2;ENSG00000168671|ENST00000282507|UGT3A2;ENSG00000145626|ENST00000274278|UGT3A1	nc|ENSG00000168671|Q3SY77-2|UGT3A2	nc|ENSG00000168671|Q3SY77-2|UGT3A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3148803710938	2	527.313826	1052.6131	0.38903	0.00020514	0.95986	0.00050615	1.3489	0.00071129	527.31433023998	53.463	0.49331	53.519	53.273	53.766	0.056259					46	18	3	0	0	0	0.088391	2	12614	12614;12656		39.957	1.7818	1	1222100			21675	6290	11998	11999	27880;27881	27880					0.08889745813735317
LAHTLFQF	8	Unmodified	_LAHTLFQF_					0	0	0			REV__ENSG00000166398|ENST00000299505|GARRE1	REV__ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.78173828125	2	488.766178	975.517802	0.53911	0.0002635	-0.64296	-0.00031426	-0.10386	-5.0761E-05	488.76561853404354	32.485	1.1659	32.485	32.119	33.285	0					80	41	3	0	0	0	0.43455	1	6323	6323		11.114	0.93107	1	769870	+		21676	17317	11999	12000	27882	27882					0.029063926227081538
LAHTTLTL	8	Unmodified	_LAHTTLTL_					0	0	0		nc|ENSG00000114993|Q9BST9-3|RTKN;nc|ENSG00000114993|Q9BST9-2|RTKN;ENSG00000114993|ENST00000272430|RTKN;nc|ENSG00000182010|Q8IZC4-2|RTKN2;ENSG00000182010|ENST00000373789|RTKN2	nc|ENSG00000114993|Q9BST9-3|RTKN;nc|ENSG00000182010|Q8IZC4-2|RTKN2	nc|ENSG00000182010|Q8IZC4-2|RTKN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8024597167969	2	435.258185	868.501818	-0.07172	-3.1217E-05	0.04092	1.7811E-05	-0.0308	-1.3406E-05	435.2582613203548	62.161	0.79779	62.161	61.891	62.689	0					37	29	2	0	0	0	0.28969	1	15298	15298		28.487	17.663	1	176520			21677	7263;2600	12000	12001	27883	27883					0.062306863857997996
LAHTTLTL	8	Unmodified	_LAHTTLTL_					0	0	0		nc|ENSG00000114993|Q9BST9-3|RTKN;nc|ENSG00000114993|Q9BST9-2|RTKN;ENSG00000114993|ENST00000272430|RTKN;nc|ENSG00000182010|Q8IZC4-2|RTKN2;ENSG00000182010|ENST00000373789|RTKN2	nc|ENSG00000114993|Q9BST9-3|RTKN;nc|ENSG00000182010|Q8IZC4-2|RTKN2	nc|ENSG00000182010|Q8IZC4-2|RTKN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8025207519531	2	435.258185	868.501818	-0.12451	-5.4196E-05	0.12816	5.5782E-05	0.0036447	1.5864E-06	435.2582561247959	62.101	0.69638	62.093	61.846	62.542	-0.0085564					34	25	2	0	0	0	0.26527	1	15314	15314		28.487	8.0332	1	148740			21678	7263;2600	12000	12001	27884	27884					0.062306863857997996
LAHVFAVALL	10	Unmodified	_LAHVFAVALL_					0	0	0			REV__CON__Q3MHN5	REV__CON__Q3MHN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3501586914062	2	527.326402	1052.63825	0.60629	0.00031971	-2.7695	-0.0014605	-2.1632	-0.0011407	527.3249084779609	53.788	0.127	53.779	53.688	53.815	-0.0096054					5	4	2	0	0	0	0.31395	1	12732	12732		12.532	3.9383	1	154520	+	+	21679	13244	12001	12002	27885	27885					0.11403800616312765
LAIAILIRKRL	11	Unmodified	_LAIAILIRKRL_					0	0	0			REV__nc|ENSG00000129353|Q8IWA5-3|SLC44A2	REV__nc|ENSG00000129353|Q8IWA5-3|SLC44A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.3023986816406	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.228	1	60.323	59.823	60.823	0.095093								0	0	0	0.38186	1	14710	14710		0.50596	0.41111	1		+		21680	15413	12002	12003	27886	27886					0.25807349203978447
LAIFKYNEKEI	11	Unmodified	_LAIFKYNEKEI_					0	0	0		nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2	nc|ENSG00000095383|Q9BYX2-4|TBC1D2	nc|ENSG00000095383|Q9BYX2-4|TBC1D2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2692565917969	3	456.590494	1366.74965	0.15877	7.2492E-05	-2.2709	-0.0010369	-2.1121	-0.00096437	456.5892199079881	39.41	0.71465	39.51	39.262	39.977	0.099407					44	22	3	0	0	0	0.32625	1	8438	8438		8.7518	0	1	356460			21681	1450	12003	12004	27887	27887					0.0809477046293523
LAIFKYNEKEI	11	Unmodified	_LAIFKYNEKEI_					0	0	0		nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2	nc|ENSG00000095383|Q9BYX2-4|TBC1D2	nc|ENSG00000095383|Q9BYX2-4|TBC1D2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	456.590494	1366.74965	-0.22328	-0.00010195	-1.5542	-0.00070961	-1.7774	-0.00081156	456.5896643430662	39.567	0.70025	39.567	39.242	39.942	0	0.029334	0.00050092	NaN	12.228	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238840			21682	1450	12003	12004							0.0809477046293523
LAIFKYNEKEI	11	Unmodified	_LAIFKYNEKEI_					0	0	0		nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2	nc|ENSG00000095383|Q9BYX2-4|TBC1D2	nc|ENSG00000095383|Q9BYX2-4|TBC1D2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	456.590494	1366.74965	0.033534	1.5311E-05	-2.0301	-0.00092694	-1.9966	-0.00091163	456.5896010449761	39.444	0.49912	39.536	39.278	39.777	0.09267	-0.0013424	-0.00015106	NaN	12.228	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290420			21683	1450	12003	12004							0.0809477046293523
LAIFNLLNL	9	Unmodified	_LAIFNLLNL_					0	0	0		ENSG00000182898|ENST00000368806|TCHHL1	ENSG00000182898|ENST00000368806|TCHHL1	ENSG00000182898|ENST00000368806|TCHHL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.248291015625	2	515.81841	1029.62227	0.23782	0.00012267	-1.5896	-0.00081992	-1.3517	-0.00069725	515.8184927312149	59.259	0.3867	59.35	59.101	59.488	0.091305					21	13	2	0	0	0	0.22596	1	14348	14348		6.7232	2.7788	1	115690			21684	7331	12004	12005	27888	27888					0.10864094379394373
LAILGRKH	8	Unmodified	_LAILGRKH_					0	0	0		NGB|p.S91I|1|0.11|ENSG00000165553|chr14:77268515-77268515|C/A|missense_variant	NGB|p.S91I|1|0.11|ENSG00000165553|chr14:77268515-77268515|C/A|missense_variant	NGB|p.S91I|1|0.11|ENSG00000165553|chr14:77268515-77268515|C/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.29547119140625	2	454.295436	906.57632	0.25183	0.00011441	-1.5645	-0.00071076	-1.3127	-0.00059636	454.29534378202345	52.964	2.7439	52.964	52.63	55.374	0					251	101	4	0	0	0	0.38703	1	12519	12519		20.871	0	1	7242100			21685	13031	12005	12006	27889	27889					0.11929493987838669
LAILLPCL	8	Unmodified	_LAILLPCL_					0	0	0			REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	REV__ENST00000369869.1_1_1:110032306-110035219:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.25726318359375	2	428.27225	854.529947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.551	1	87.551	87.051	88.051	0								0	0	0	0.3683	1	23091	23091		6.3541	0	1		+		21686	20365	12006	12007	27890	27890					0.09686293041522731
LAILRLSL	8	Unmodified	_LAILRLSL_					0	0	0		ENSG00000075240|ENST00000406902|GRAMD4	ENSG00000075240|ENST00000406902|GRAMD4	ENSG00000075240|ENST00000406902|GRAMD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.8077392578125	2	449.807845	897.601138	0.30882	0.00013891	-0.30847	-0.00013875	0.00034278	1.5419E-07	449.80763731213693	66.556	0.72956	66.556	66.292	67.022	0					65	25	4	0	0	0	0.024266	2	16652	16652;16705		96.285	3.8776	1	1106200			21687	1041	12007	12008	27891;27892	27891					0.1482412907057551
LAILRLSL	8	Unmodified	_LAILRLSL_					0	0	0		ENSG00000075240|ENST00000406902|GRAMD4	ENSG00000075240|ENST00000406902|GRAMD4	ENSG00000075240|ENST00000406902|GRAMD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.807861328125	2	449.807845	897.601138	0.22499	0.0001012	-0.1681	-7.5614E-05	0.05689	2.5589E-05	449.807693354627	66.423	0.77181	66.507	66.274	67.046	0.083832					63	27	3	0	0	0	0.035151	3	16605	16605;16654;16707		85.272	3.6589	1	1187300			21688	1041	12007	12008	27893;27894;27895	27893					0.1482412907057551
LAILRLSL	8	Unmodified	_LAILRLSL_					0	0	0		ENSG00000075240|ENST00000406902|GRAMD4	ENSG00000075240|ENST00000406902|GRAMD4	ENSG00000075240|ENST00000406902|GRAMD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.807861328125	2	449.807845	897.601138	0.14734	6.6274E-05	-0.039033	-1.7558E-05	0.1083	4.8716E-05	449.807719137795	66.563	0.73364	66.55	66.278	67.012	-0.013588					69	26	4	0	0	0	0.035151	2	16640	16640;16689		85.272	3.6589	1	1015400			21689	1041	12007	12008	27896;27897	27896					0.1482412907057551
LAIQIDTKV	9	Unmodified	_LAIQIDTKV_					0	0	0			REV__nc|ENSG00000128951|P33316-2|DUT	REV__nc|ENSG00000128951|P33316-2|DUT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7951965332031	2	500.8055	999.596446	0.38469	0.00019265	-0.44557	-0.00022314	-0.060878	-3.0488E-05	500.80549853446155	58.208	0.73666	58.294	57.997	58.734	0.085621					53	25	3	0	0	0	0.30623	1	14192	14192		7.9102	0	1	502890	+		21690	15394	12008	12009	27898	27898					0.09663200137117656
LAIQIERQAK	10	Unmodified	_LAIQIERQAK_					0	0	0		nc|ENSG00000118197|Q5T1V6-2|DDX59;ENSG00000118197|ENST00000331314|DDX59	nc|ENSG00000118197|Q5T1V6-2|DDX59	nc|ENSG00000118197|Q5T1V6-2|DDX59	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.809326171875	2	585.35368	1168.69281	-0.059918	-3.5073E-05	0.34486	0.00020187	0.28495	0.00016679	585.353981028268	28.099	0.31088	28.099	27.896	28.207	0					18	10	2	0	0	0	0.32072	1	4882	4882		2.9952	0.26005	1	133250			21691	2819	12009	12010	27899	27899					0.11520767697084011
LAIREQHVEK	10	Unmodified	_LAIREQHVEK_					0	0	0			REV__nc|ENSG00000169891|Q8NFH8-4|REPS2	REV__nc|ENSG00000169891|Q8NFH8-4|REPS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.88909912109375	3	408.234933	1221.68297	-0.7928	-0.00032365	2.8588	0.001167	2.0659	0.00084339	408.2361497053331	35.247	0.35713	35.325	35.06	35.418	0.077377					26	12	3	0	0	0	0.31911	1	7055	7055		1.9064	0	1	117580	+		21692	17548	12010	12011	27900	27900					0.08099579691702274
LAISPTAFSH	10	Unmodified	_LAISPTAFSH_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2981567382812	2	522.279649	1042.54475	0.59458	0.00031054	0.82467	0.00043071	1.4193	0.00074125	522.2803723795656	52.62	0.84995	52.671	52.523	53.373	0.050571					36	30	2	0	0	0	0.27042	1	12351	12351		15.847	7.2539	1	480880			21693	6578	12011	12012	27901	27901					0.025174564432290936
LAIWSDLLF	9	Unmodified	_LAIWSDLLF_					0	0	0			REV__nc|ENSG00000173698|Q8IZP9-10|ADGRG2	REV__nc|ENSG00000173698|Q8IZP9-10|ADGRG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8632202148438	2	539.302593	1076.59063	0.7782	0.00041969	-0.32132	-0.00017329	0.45688	0.0002464	539.3023425478415	76.902	0.77901	76.871	76.537	77.316	-0.031334					61	28	3	0	0	0	0.24913	1	19750	19750		12.532	0	1	867820	+		21694	17798	12012	12013	27902	27902					0.05540101625456373
LAIYCFCMLQI	11	Unmodified	_LAIYCFCMLQI_					0	0	0		ENSG00000204640|ENST00000376865|NMS	ENSG00000204640|ENST00000376865|NMS	ENSG00000204640|ENST00000376865|NMS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.8846740722656	3	439.884979	1316.63311	-0.17905	-7.8763E-05	-0.13663	-6.0101E-05	-0.31568	-0.00013886	439.8848529814565	28.372	0.90197	28.373	27.992	28.894	0.0004673					75	31	3	0	0	0	0.40701	1	4958	4958		10.315	1.0715	1	844180			21695	8248	12013	12014	27903	27903					-0.01254330624465183
LAKDIMKDIGY	11	Unmodified	_LAKDIMKDIGY_					0	0	0		nc|ENSG00000099256|Q9NRG1-3|PRTFDC1;nc|ENSG00000099256|Q9NRG1-2|PRTFDC1;ENSG00000099256|ENST00000320152|PRTFDC1	nc|ENSG00000099256|Q9NRG1-3|PRTFDC1	nc|ENSG00000099256|Q9NRG1-3|PRTFDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3173828125	2	633.841756	1265.66896	0.46095	0.00029217	0.80643	0.00051115	1.2674	0.00080332	633.842944864905	39.594	0.30602	39.693	39.511	39.817	0.099403					14	10	2	0	0	0	0.33073	1	8388	8388		7.1017	0	1	150190			21696	1480	12014	12015	27904	27904					0.04675166148399512
LAKHQLLL	8	Unmodified	_LAKHQLLL_					0	0	0			REV__nc|ENSG00000138376|Q99728-3|BARD1	REV__nc|ENSG00000138376|Q99728-3|BARD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.3054504394531	2	468.30547	934.596387	0.40418	0.00018928	-0.18699	-8.7566E-05	0.21719	0.00010171	468.3053021537102	54.753	1.1335	54.753	54.405	55.539	0					112	41	4	0	0	0	0.2157	1	13075	13075		40.449	0.49126	1	8928500	+		21697	15923	12015	12016	27905	27905					0.12647244927802603
LAKIHAELS	9	Unmodified	_LAKIHAELS_					0	0	0			REV__ENSG00000257138|ENST00000547270|TAS2R38	REV__ENSG00000257138|ENST00000547270|TAS2R38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2473449707031	2	491.290017	980.565481	0.15948	7.835E-05	1.8333	0.00090069	1.9928	0.00097904	491.29080319881785	69.627	0.53018	69.627	69.285	69.815	0					32	18	2	0	0	0	0.24913	1	17516	17516		12.532	0.89125	1	210890	+		21698	19259	12016	12017	27906	27906					0.07442046822893644
LAKIHIWAIF	10	Unmodified	_LAKIHIWAIF_					0	0	0			REV__ENSG00000143882|ENST00000272238|ATP6V1C2	REV__ENSG00000143882|ENST00000272238|ATP6V1C2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3704223632812	2	606.368601	1210.72265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.5	1	116.52	116.02	117.02	0.020988								0	0	0	0.38206	1	30227	30227		0	0	1		+		21699	16209	12017	12018	27907	27907					0.1257175143305176
LAKIMAAL	8	Unmodified	_LAKIMAAL_					0	0	0			REV__nc|ENSG00000101639|Q8TEP8-2|CEP192	REV__nc|ENSG00000101639|Q8TEP8-2|CEP192	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.574951171875	2	415.762049	829.509546	-0.32668	-0.00013582	-2.8831	-0.0011987	-3.2098	-0.0013345	415.75932222208684	27.804	0.11331	27.804	27.7	27.814	0					5	3	2	0	0	0	0.34147	1	4764	4764		11.114	0	1	16436	+		21700	14281	12018	12019	27908	27908					0.08797122381713507
LAKKLSDRV	9	Unmodified	_LAKKLSDRV_					0	0	0			REV__ENSG00000157764|ENST00000646891|BRAF	REV__ENSG00000157764|ENST00000646891|BRAF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7728881835938	2	515.324391	1028.63423	-0.10331	-5.3238E-05	-0.35499	-0.00018293	-0.4583	-0.00023617	515.3241691321743	13.359	0.20016	13.26	13.189	13.389	-0.09929					7	4	2	0	0	0	0.26031	1	406	406		3.5965	0.60125	1	42079	+		21701	16792	12019	12020	27909	27909					0.12105711122626417
LAKKRFRY	8	Unmodified	_LAKKRFRY_					0	0	0			REV__ENST00000333050.6_1_16:8889558-8889804:-|nuORF	REV__ENST00000333050.6_1_16:8889558-8889804:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8137817382812	2	541.335093	1080.65563	0.67709	0.00036653	-0.37264	-0.00020173	0.30444	0.00016481	541.3347334183339	29.397	0.57613	29.397	29.142	29.718	0					32	20	2	0	0	0	0.34408	1	5181	5181		2.3027	0.4585	1	116760	+		21702	20052	12020	12021	27910	27910					0.118531409419802
LAKNKSIPF	9	Unmodified	_LAKNKSIPF_					0	0	0		ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7879943847656	2	509.30821	1016.60187	0.16619	8.4641E-05	0.063085	3.213E-05	0.22927	0.00011677	509.3082459260983	53.704	0.57351	53.76	53.482	54.056	0.056259					47	21	3	0	0	0	0.22596	1	12760	12760		10.824	0	1	622630			21703	7697	12021	12022	27911	27911					0.09422923719603205
LAKSSKCNR	9	Unmodified	_LAKSSKCNR_					0	0	0		ENST00000480137.1_1_7:128446747-128451900:+|nuORF;nc|ENSG00000128596|Q96JN2-2|CCDC136;ENSG00000128596|ENST00000297788|CCDC136;nc|ENSG00000128596|Q96JN2-4|CCDC136	ENST00000480137.1_1_7:128446747-128451900:+|nuORF	ENST00000480137.1_1_7:128446747-128451900:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.76568603515625	2	503.776751	1005.53895	0.10597	5.3383E-05	1.8195	0.0009166	1.9254	0.00096999	503.7784049944112	22.948	0.83376	22.948	22.39	23.224	0					71	28	4	0	0	0	0.30064	1	3335	3335		8.7454	0.15213	1	104320			21704	3379	12022	12023	27912	27912					0.03640034659918001
LAKWQNSYSI	10	Unmodified	_LAKWQNSYSI_					0	0	0		ENST00000483534.5_1_20:48699307-48713022:-|nuORF;ENST00000521628.1_1_8:48962382-48973385:+|nuORF;nc|ENSG00000244687|Q13404-6|UBE2V1;nc|ENSG00000244687|Q13404-8|UBE2V1;ENSG00000169139|ENST00000523111|UBE2V2;ENSG00000244687|ENST00000371674|UBE2V1;nc|ENSG00000244687|Q13404-7|UBE2V1;nc|ENSG00000244687|Q13404-2|UBE2V1;nc|ENSG00000244687|Q13404-1|UBE2V1	ENST00000483534.5_1_20:48699307-48713022:-|nuORF	ENST00000483534.5_1_20:48699307-48713022:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.51495361328125	3	403.880267	1208.61897	-0.1685	-6.8053E-05	-0.81455	-0.00032898	-0.98305	-0.00039703	403.88090581409244	16.505	0.11765	16.442	16.351	16.468	-0.062532					5	3	2	0	0	0	0.31267	1	1354	1354		8.9762	3.1928	1	5538.3			21705	6331	12023	12024	27913	27913					0.023007995347597898
LAKYRKLTA	9	Unmodified	_LAKYRKLTA_					0	0	0		ENST00000478856.5_1_3:100053614-100067682:+|nuORF	ENST00000478856.5_1_3:100053614-100067682:+|nuORF	ENST00000478856.5_1_3:100053614-100067682:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2367553710938	2	532.334759	1062.65496	0.16588	8.8305E-05	0.2177	0.00011589	0.38358	0.00020419	532.3348090894082	17.295	0.3618	17.178	17.053	17.414	-0.11739					21	12	2	0	0	0	0.26257	1	1559	1559		0.52476	0	1	43900			21706	10982	12024	12025	27914	27914					0.12614301502276248
LALALGGGHLL	11	Unmodified	_LALALGGGHLL_					0	0	0			REV__nc|ENSG00000138496|Q8IXQ6-3|PARP9	REV__nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7794799804688	2	517.821484	1033.62842	0.24213	0.00012538	0.76011	0.0003936	1.0022	0.00051898	517.8218144642483	59.447	0.59877	59.447	59.188	59.787	0					39	20	3	0	0	0	0.30716	1	14418	14418		21.747	21.747	1	421680	+		21707	15931	12025	12026	27915	27915					0.1129461261095912
LALALGGGHLL	11	Unmodified	_LALALGGGHLL_					0	0	0			REV__nc|ENSG00000138496|Q8IXQ6-3|PARP9	REV__nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	517.821484	1033.62842	0.26189	0.00013561	0.70086	0.00036292	0.96275	0.00049853	517.8217299427832	59.333	0.50195	59.424	59.126	59.628	0.091301	0.013016	-4.0928E-05	NaN	15.847	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	570440	+		21708	15931	12025	12026							0.1129461261095912
LALALGGGHLL	11	Unmodified	_LALALGGGHLL_					0	0	0			REV__nc|ENSG00000138496|Q8IXQ6-3|PARP9	REV__nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	517.821484	1033.62842	0.44293	0.00022936	0.74472	0.00038563	1.1876	0.00061499	517.8218308782425	59.377	0.53574	59.363	59.113	59.649	-0.014267	-0.048644	4.4968E-06	NaN	15.847	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440770	+		21709	15931	12025	12026							0.1129461261095912
LALALPDRA	9	Unmodified	_LALALPDRA_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2975158691406	2	470.284734	938.554916	0.92833	0.00043658	-1.5052	-0.00070786	-0.57684	-0.00027128	470.2840184983956	56.59	0.40264	56.571	56.326	56.729	-0.019077					21	14	2	0	0	0	0.20279	1	13546	13546		26.341	11.76	1	510560	+		21710	17310	12026	12027	27916	27916					0.08318064168463479
LALALPDRA	9	Unmodified	_LALALPDRA_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	470.284734	938.554916	0.26851	0.00012628	-1.2809	-0.00060238	-1.0124	-0.0004761	470.28419253051584	56.499	0.55812	56.499	56.291	56.849	0	-0.010519	-3.2718E-05	NaN	26.341	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375150	+		21711	17310	12026	12027							0.08318064168463479
LALALPDRA	9	Unmodified	_LALALPDRA_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	470.284734	938.554916	0.51025	0.00023996	-1.1075	-0.00052082	-0.59722	-0.00028086	470.2840761261301	56.38	0.52957	56.458	56.273	56.802	0.078674	-0.051005	0.00013039	NaN	26.341	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375450	+		21712	17310	12026	12027							0.08318064168463479
LALCKKPLKPV	11	Unmodified	_LALCKKPLKPV_					0	0	0			REV__nc|ENSG00000164893|Q8TCU3-2|SLC7A13	REV__nc|ENSG00000164893|Q8TCU3-2|SLC7A13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.3901977539062	2	605.391219	1208.76789	0.1632	9.88E-05	-1.0079	-0.00061015	-0.84466	-0.00051135	605.3903883842572	41.021	0.67093	41.117	40.777	41.448	0.096622					52	24	3	0	0	0	0.44523	1	8781	8781		5.2969	3.9674	1	396950	+		21713	17184	12027	12028	27917	27917					0.17185233903933295
LALCKKPLKPV	11	Unmodified	_LALCKKPLKPV_					0	0	0			REV__nc|ENSG00000164893|Q8TCU3-2|SLC7A13	REV__nc|ENSG00000164893|Q8TCU3-2|SLC7A13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	605.391219	1208.76789	0.35423	0.00021445	-1.7863	-0.0010814	-1.4321	-0.00086696	605.390119373957	41.573	0.5517	41.573	41.069	41.62	0	0.27893	-0.00066125	NaN	5.2969	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1185300	+		21714	17184	12027	12028							0.17185233903933295
LALCKKPLKPV	11	Unmodified	_LALCKKPLKPV_					0	0	0			REV__nc|ENSG00000164893|Q8TCU3-2|SLC7A13	REV__nc|ENSG00000164893|Q8TCU3-2|SLC7A13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	605.391219	1208.76789	0.47955	0.00029032	-1.3707	-0.0008298	-0.89114	-0.00053949	605.3901394976815	41.101	0.63419	41.191	40.822	41.456	0.090248	-0.10253	-0.00015805	NaN	5.2969	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387730	+		21715	17184	12027	12028							0.17185233903933295
LALCKKPLKPV	11	Unmodified	_LALCKKPLKPV_					0	0	0			REV__nc|ENSG00000164893|Q8TCU3-2|SLC7A13	REV__nc|ENSG00000164893|Q8TCU3-2|SLC7A13	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	605.391219	1208.76789	0.1632	9.88E-05	-1.0079	-0.00061015	-0.84466	-0.00051135	605.3903883842572	41.021	0.67093	41.117	40.777	41.448	0.096622	-0.1764	0.00028126	NaN	5.2969	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	396950	+		21716	17184	12027	12028							0.17185233903933295
LALCSSVRPG	10	Unmodified	_LALCSSVRPG_					0	0	0		ENST00000509933.1_1_6:3231731-3231869:+|nuORF	ENST00000509933.1_1_6:3231731-3231869:+|nuORF	ENST00000509933.1_1_6:3231731-3231869:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2928161621094	2	501.773677	1001.5328	0.11507	5.774E-05	-0.4346	-0.00021807	-0.31953	-0.00016033	501.7735664342297	15.578	0.77409	15.578	15.348	16.123	0					48	26	3	0	0	0	0.37587	1	1145	1145		7.9102	0	1	120270			21717	11365	12028	12029	27918	27918					0.03209516428398729
LALEGFSGR	9	Unmodified	_LALEGFSGR_					0	0	0			REV__nc|ENSG00000114302|P13861-2|PRKAR2A	REV__nc|ENSG00000114302|P13861-2|PRKAR2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.30084228515625	2	475.258717	948.50288	0.12631	6.003E-05	0.04098	1.9476E-05	0.16729	7.9506E-05	475.2587127076278	33.127	0.68753	33.181	32.985	33.673	0.054371					39	24	2	0	0	0	0.23783	1	6356	6356		18.135	2.3668	1	179990	+		21718	13343	12029	12030	27919	27919					0.026569007547209367
LALGDLLLLI	10	Unmodified	_LALGDLLLLI_					0	0	0		ENSG00000126010|ENST00000380289|GRPR	ENSG00000126010|ENST00000380289|GRPR	ENSG00000126010|ENST00000380289|GRPR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3500366210938	2	527.349543	1052.68453	0.70024	0.00036927	0.41743	0.00022013	1.1177	0.0005894	527.3495841749449	53.585	1.0631	53.585	53.259	54.322	0					80	39	3	0	0	0	0.3641	1	12669	12669		10.074	0	1	957460			21719	3252	12030	12031	27920	27920					0.16029820727771948
LALGRFSLT	9	Unmodified	_LALGRFSLT_					0	0	0		nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B;ENST00000480816.5_1_20:3781734-3783795:+|nuORF	nc|ENSG00000101224|P30305-3|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7823486328125	2	489.292559	976.570566	0.15255	7.4644E-05	1.4477	0.00070837	1.6003	0.00078302	489.2930478605337	33.16	0.41008	33.16	32.955	33.365	0					22	14	2	0	0	0	0.2451	1	6372	6372		15.847	1.0089	1	146530			21720	1677	12031	12032	27921	27921					0.0813435068552053
LALHFQGFRR	10	Unmodified	_LALHFQGFRR_					0	0	0			REV__ENSG00000049239|ENST00000377403|H6PD	REV__ENSG00000049239|ENST00000377403|H6PD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.2278747558594	3	415.57188	1243.69381	0.072387	3.0082E-05	-0.59154	-0.00024583	-0.51915	-0.00021575	415.5716003056452	30.113	0.53076	30.113	29.86	30.391	0					45	18	4	0	0	0	0.32137	1	5415	5415		1.7423	0.28716	1	296690	+		21721	13555	12032	12033	27922	27922					0.08171026856643948
LALHFQGFRR	10	Unmodified	_LALHFQGFRR_					0	0	0			REV__ENSG00000049239|ENST00000377403|H6PD	REV__ENSG00000049239|ENST00000377403|H6PD	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	415.57188	1243.69381	-0.094678	-3.9345E-05	-0.31893	-0.00013254	-0.41361	-0.00017188	415.5716412685411	30.164	0.49179	30.191	29.956	30.448	0.027157	0.026129	0.00032295	NaN	3.3196	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297420	+		21722	13555	12032	12033							0.08171026856643948
LALHLGRK	8	Unmodified	_LALHLGRK_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ALS2|p.T978Ifs*30|1|0.04|ENSG00000003393|chr2:201727260-201727261|-/ATAAAGAAGAAATATAAATT|frameshift_variant;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENST00000494017.5_1_2:202591977-202598136:-|nuORF	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2955322265625	2	454.295436	906.57632	0.38717	0.00017589	-1.6719	-0.00075955	-1.2848	-0.00058366	454.2952786152763	52.879	3.1282	52.93	52.603	55.731	0.050575					232	116	3	0	0	0	0.33916	1	12461	12461		26.341	5.4701	1	7766000			21723	302	12033	12034	27923	27923					0.11929493987850037
LALHLGRK	8	Unmodified	_LALHLGRK_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ALS2|p.T978Ifs*30|1|0.04|ENSG00000003393|chr2:201727260-201727261|-/ATAAAGAAGAAATATAAATT|frameshift_variant;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENST00000494017.5_1_2:202591977-202598136:-|nuORF	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2954406738281	2	454.295436	906.57632	0.23328	0.00010598	-1.6837	-0.00076491	-1.4504	-0.00065893	454.2953576360948	53.168	2.6396	53.158	52.631	55.27	-0.0096054					237	97	4	0	0	0	0.33916	1	12527	12527		26.341	5.4701	1	6955500			21724	302	12033	12034	27924	27924					0.11929493987850037
LALHQDLF	8	Unmodified	_LALHQDLF_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2976379394531	2	478.763635	955.512717	0.17979	8.6079E-05	0.64107	0.00030692	0.82086	0.000393	478.76380001937224	63.098	0.40928	63.098	62.905	63.315	0					19	14	2	0	0	0	0.29855	1	15597	15597		32.117	1.8922	1	185290			21725	8126	12034	12035	27925	27925					0.03318088760079263
LALIVPMLWR	10	Unmodified	_LALIVPMLWR_					0	0	0			REV__chr7:128457680-128466563|122|38.16|0.0|21.86|+|0|TE_info:AluSx1,AluSx1_dup45977,Alu,SINE,donor,+,128457630,128457680|None,EFCAB3P1|1	REV__chr7:128457680-128466563|122|38.16|0.0|21.86|+|0|TE_info:AluSx1,AluSx1_dup45977,Alu,SINE,donor,+,128457630,128457680|None,EFCAB3P1|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.370361328125	2	606.370287	1210.72602	0.27502	0.00016677	-0.025093	-1.5215E-05	0.24993	0.00015155	606.3699681104845	115.1	0.10634	115.08	115.02	115.12	-0.020988					16	13	2	0	0	0	0.41805	1	29858	29858		0.45834	0	1	21552	+		21726	13215	12035	12036	27926	27926					0.12908678215421787
LALIVPMLWR	10	Unmodified	_LALIVPMLWR_					0	0	0			REV__chr7:128457680-128466563|122|38.16|0.0|21.86|+|0|TE_info:AluSx1,AluSx1_dup45977,Alu,SINE,donor,+,128457630,128457680|None,EFCAB3P1|1	REV__chr7:128457680-128466563|122|38.16|0.0|21.86|+|0|TE_info:AluSx1,AluSx1_dup45977,Alu,SINE,donor,+,128457630,128457680|None,EFCAB3P1|1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	606.370287	1210.72602	0.27502	0.00016677	-0.025093	-1.5215E-05	0.24993	0.00015155	606.3699681104845	115.1	0.10634	115.08	115.02	115.12	-0.020988	0	0	NaN	0.45834	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21552	+		21727	13215	12035	12036							0.12908678215421787
LALLIPHVT	9	Unmodified	_LALLIPHVT_					0	0	0			REV__ENSG00000156162|ENST00000414645|DPY19L4	REV__ENSG00000156162|ENST00000414645|DPY19L4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.8135070800781	2	488.813128	975.611703	0.5184	0.0002534	-0.018236	-8.9139E-06	0.50016	0.00024449	488.81305233423404	48.36	2.2938	48.403	46.866	49.16	0.04332					216	84	4	0	0	0	0.11517	1	10682	10682		36.044	1.9418	1	4324200	+		21728	16733	12036	12037	27927	27927					0.12292111724991628
LALLIPHVT	9	Unmodified	_LALLIPHVT_					0	0	0			REV__ENSG00000156162|ENST00000414645|DPY19L4	REV__ENSG00000156162|ENST00000414645|DPY19L4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2745056152344	2	488.813128	975.611703	0.18597	9.0903E-05	0.0077707	3.7984E-06	0.19374	9.4701E-05	488.8130388261992	49.341	0.58459	49.373	49.121	49.706	0.032043					32	20	2	0	0	0	0.1659	1	11329	11329		28.487	1.6032	1	349580	+		21729	16733	12036	12037	27928	27928					0.12292111724991628
LALLIPHVT	9	Unmodified	_LALLIPHVT_					0	0	0			REV__ENSG00000156162|ENST00000414645|DPY19L4	REV__ENSG00000156162|ENST00000414645|DPY19L4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	488.813128	975.611703	0.2724	0.00013315	-0.19005	-9.29E-05	0.082345	4.0251E-05	488.81307646204465	49.222	0.7049	49.267	49.016	49.721	0.044891	-0.053038	-0.00010914	NaN	28.487	42	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275320	+		21730	16733	12036	12037							0.12292111724991628
LALLQSTVT	9	Unmodified	_LALLQSTVT_					0	0	0			REV__ENSG00000167702|ENST00000645548|KIFC2	REV__ENSG00000167702|ENST00000645548|KIFC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.27215576171875	2	473.2844	944.554247	0.34182	0.00016178	1.8143	0.00085866	2.1561	0.0010204	473.2835890135034	33.724	0.13351	33.724	33.646	33.78	0					6	4	2	0	0	0	0.24311	1	6584	6584		11.64	0	1	28832	+		21731	17404	12037	12038	27929	27929					0.079752247287729
LALNLAALL	9	Unmodified	_LALNLAALL_					0	0	0			REV__ENSG00000181652|ENST00000639579|ATG9B	REV__ENSG00000181652|ENST00000639579|ATG9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.287353515625	2	456.299853	910.585153	0.16452	7.5068E-05	0.062116	2.8343E-05	0.22663	0.00010341	456.2997746925094	49.745	0.85188	49.766	49.457	50.309	0.020691					75	31	3	0	0	0	0.22883	1	11627	11627		19.439	0	1	2118900	+		21732	18159	12038	12039	27930	27930					0.1262842283365444
LALNRAHMN	9	Unmodified	_LALNRAHMN_					0	0	0			REV__ENSG00000031081|ENST00000264245|ARHGAP31	REV__ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.8430786132812	2	520.276918	1038.53928	0.48773	0.00025376	-1.1164	-0.00058086	-0.6287	-0.0003271	520.2761791512587	52.726	0.29893	52.726	52.55	52.849	0					16	10	2	0	0	0	0.24739	1	12407	12407		13.508	0	1	144560	+		21733	13494	12039	12040	27931	27931					0.021554543797719816
LALNRAHMN	9	Unmodified	_LALNRAHMN_					0	0	0			REV__ENSG00000031081|ENST00000264245|ARHGAP31	REV__ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	520.276918	1038.53928	0.33967	0.00017672	-0.33959	-0.00017668	7.8945E-05	4.1073E-08	520.2767568348978	52.861	0.32488	52.86	52.688	53.013	-0.00080872	0.067196	0.00029471	NaN	8.5933	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202020	+		21734	13494	12039	12040							0.021554543797719816
LALPMAVIMG	10	Unmodified	_LALPMAVIMG_					0	0	0		ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.30078125	2	508.287574	1014.56059	0.26576	0.00013508	1.3609	0.00069174	1.6267	0.00082683	508.2883576933624	47.066	0.45427	47.118	46.846	47.3	0.052574					31	16	2	0	0	0	0.28208	1	10638	10638		18.135	1.0221	1	1287900			21735	6318	12040	12041	27932	27932					0.053897033642783754
LALQSIFFYMP	11	Unmodified	_LALQSIFFYMP_					0	0	0			REV__ENSG00000196539|ENST00000359594|OR2T3	REV__ENSG00000196539|ENST00000359594|OR2T3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.279296875	3	443.901904	1328.68388	0.34192	0.00015178	1.1808	0.00052416	1.5227	0.00067594	443.9019330617289	33.353	0.49407	33.42	33.21	33.704	0.06636					21	17	2	0	0	0	0.33277	1	6428	6428		3.0723	0	1	97836	+		21736	18253	12041	12042	27933	27933					0.032686580163954204
LALQTREQHI	10	Unmodified	_LALQTREQHI_					0	0	0		ENSG00000178445|ENST00000321612|GLDC	ENSG00000178445|ENST00000321612|GLDC	ENSG00000178445|ENST00000321612|GLDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.55450439453125	3	403.56305	1207.66732	-0.41638	-0.00016803	0.84231	0.00033992	0.42593	0.00017189	403.56309385952494	13.864	0.36804	13.864	13.687	14.055	0					25	12	3	0	0	0	0.32033	1	547	547		4.1895	0.31317	1	32366			21737	7058	12042	12043	27934	27934					0.07179293174658596
LALQTREQHI	10	Unmodified	_LALQTREQHI_					0	0	0		ENSG00000178445|ENST00000321612|GLDC	ENSG00000178445|ENST00000321612|GLDC	ENSG00000178445|ENST00000321612|GLDC	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	403.56305	1207.66732	-0.5419	-0.00021869	0.15292	6.1713E-05	-0.38898	-0.00015698	403.5631270555854	13.943	0.38836	13.839	13.603	13.991	-0.10466	-0.016618	-0.00013597	NaN	4.1895	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43503			21738	7058	12042	12043							0.07179293174658596
LALQTREQHI	10	Unmodified	_LALQTREQHI_					0	0	0		ENSG00000178445|ENST00000321612|GLDC	ENSG00000178445|ENST00000321612|GLDC	ENSG00000178445|ENST00000321612|GLDC	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	403.56305	1207.66732	-0.48005	-0.00019373	0.25326	0.00010221	-0.22679	-9.1526E-05	403.5632845791827	13.929	0.34531	13.863	13.632	13.977	-0.066068	0.0075279	-1.4497E-05	NaN	4.1895	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35435			21739	7058	12042	12043							0.07179293174658596
LALREVGAF	9	Unmodified	_LALREVGAF_					0	0	0			REV__nc|ENSG00000166226|P78371-2|CCT2	REV__nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.28497314453125	2	488.284734	974.554916	0.48561	0.00023711	-0.33628	-0.0001642	0.14933	7.2914E-05	488.2846171310859	53.541	0.9598	53.541	53.228	54.188	0					90	35	3	0	0	0	0.11517	1	12692	12692		36.044	3.7387	1	1241600	+		21740	17303	12043	12044	27935	27935					0.0666206416847217
LALREVGAF	9	Unmodified	_LALREVGAF_					0	0	0			REV__nc|ENSG00000166226|P78371-2|CCT2	REV__nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2847900390625	2	488.284734	974.554916	0.21631	0.00010562	-0.043226	-2.1107E-05	0.17309	8.4515E-05	488.2847314857574	53.541	1.0446	53.597	53.221	54.265	0.056259					93	39	3	0	0	0	0.11517	1	12677	12677		36.044	3.7387	1	1438000	+		21741	17303	12043	12044	27936	27936					0.0666206416847217
LALRQECREAL	11	Unmodified	_LALRQECREAL_					0	0	0			REV__ENST00000448573.2_1_9:39118101-39140549:-|nuORF	REV__ENST00000448573.2_1_9:39118101-39140549:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.780029296875	3	434.571328	1300.69215	-0.1763	-7.6615E-05	0.043346	1.8837E-05	-0.13295	-5.7778E-05	434.5718630979409	28.624	0.80896	28.624	28.333	29.142	0					52	25	4	0	0	0	0.3287	1	5036	5036		8.7518	2.5174	1	392810	+		21742	14533	12044	12045	27937	27937					0.05383604985740931
LALRQECREAL	11	Unmodified	_LALRQECREAL_					0	0	0			REV__ENST00000448573.2_1_9:39118101-39140549:-|nuORF	REV__ENST00000448573.2_1_9:39118101-39140549:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.9056701660156	3	434.571328	1300.69215	-0.29825	-0.00012961	-0.33353	-0.00014494	-0.63178	-0.00027456	434.5714248289311	28.621	0.85583	28.622	28.351	29.207	0.0004673					48	28	3	0	0	0	0.40129	1	5008	5008		11.065	2.3135	1	411690	+		21743	14533	12044	12045	27938	27938					0.05383604985740931
LALRQECREAL	11	Unmodified	_LALRQECREAL_					0	0	0			REV__ENST00000448573.2_1_9:39118101-39140549:-|nuORF	REV__ENST00000448573.2_1_9:39118101-39140549:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7800598144531	3	434.571328	1300.69215	-0.29825	-0.00012961	-0.33353	-0.00014494	-0.63178	-0.00027456	434.5714248289311	28.621	0.85583	28.622	28.351	29.207	0.0004673					48	28	3	0	0	0	0.3287	1	5028	5028		8.7518	2.8836	1	411690	+		21744	14533	12044	12045	27939	27939					0.05383604985740931
LALSKISKS	9	Unmodified	_LALSKISKS_					0	0	0			REV__nc|ENSG00000138346|P51530-4|DNA2	REV__nc|ENSG00000138346|P51530-4|DNA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7998962402344	2	473.800217	945.585882	0.32081	0.000152	-1.1866	-0.0005622	-0.86577	-0.0004102	473.7997229984798	21.24	0.62694	21.187	20.917	21.544	-0.052912					45	21	3	0	0	0	0.23767	1	2799	2799		18.146	1.0335	1	125050	+		21745	15919	12045	12046	27940	27940					0.1109121748271491
LALSPLSQL	9	Unmodified	_LALSPLSQL_					0	0	0			REV__ENST00000255641.12_1_19:1980677-1981289:+|nuORF	REV__ENST00000255641.12_1_19:1980677-1981289:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2691650390625	2	471.286943	940.559333	0.16077	7.5771E-05	-0.12276	-5.7857E-05	0.03801	1.7914E-05	471.28683514677647	71.002	0.57932	71.062	70.8	71.379	0.060783					41	20	3	0	0	0	0.13898	1	18036	18036		43.858	1.7637	1	667950	+		21746	19550	12046	12047	27941	27941					0.0866752859137705
LALTSNGLLL	10	Unmodified	_LALTSNGLLL_					0	0	0		ENSG00000188124|ENST00000641124|OR2AG2;OR2AG2|p.T134Pfs*3|1|0.28|ENSG00000188124|chr11:6768558-6768558|T/-|frameshift_variant	ENSG00000188124|ENST00000641124|OR2AG2	ENSG00000188124|ENST00000641124|OR2AG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.79815673828125	2	507.813325	1013.6121	0.27807	0.00014121	-0.1031	-5.2355E-05	0.17497	8.8855E-05	507.8131978686655	52.09	1.015	52.09	51.809	52.824	0					88	36	5	0	0	0	0.34887	1	12268	12268		12.873	2.0487	1	1079400			21747	7730	12047	12048	27942	27942					0.10583486654206808
LALVMVVVQ	9	Unmodified	_LALVMVVVQ_					0	0	0		ENST00000263934.10_1_1:10437581-10437845:+|nuORF	ENST00000263934.10_1_1:10437581-10437845:+|nuORF	ENST00000263934.10_1_1:10437581-10437845:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002014160156	2	486.301539	970.588524	0.26678	0.00012973	0.70033	0.00034057	0.9671	0.0004703	486.3018198970569	73.228	1.4746	73.282	72.352	73.827	0.053833					74	53	2	0	0	0	0.25417	1	18673	18673		8.5933	0.68312	1	213830			21748	9018	12048	12049	27943	27943					0.10205349616023796
LALVPLISLL	10	Unmodified	_LALVPLISLL_					0	0	0			REV__ENSG00000125861|ENST00000290417|GFRA4	REV__ENSG00000125861|ENST00000290417|GFRA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.79052734375	2	526.359911	1050.70527	0.73503	0.00038689	3.3436	0.0017599	4.0786	0.0021468	526.8635053490025	36.862	0.1721	36.862	36.787	36.959	0					7	5	2	0	0	0	0.32165	1	7511	7511		0.45834	0	1	58588	+		21749	15288	12049	12050	27944	27944					0.18194411107424457
LALVRPRAV	9	Unmodified	_LALVRPRAV_					0	0	0		ENST00000441747.6_1_19:1490111-1490306:-|nuORF;ENST00000588195.5_1_19:1483001-1490375:-|nuORF;ENSG00000115257|ENST00000300954|PCSK4	ENST00000441747.6_1_19:1490111-1490306:-|nuORF	ENST00000441747.6_1_19:1490111-1490306:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.8188171386719	2	497.829643	993.644734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.769	1	46.824	46.324	47.324	0.054371								0	0	0	0.24311	1	10556	10556		8.5933	0	1				21750	2625	12050	12051	27945	27945					0.14765738567689368
LALVVTLLH	9	Unmodified	_LALVVTLLH_					0	0	0		ENSG00000142871|ENST00000451137|CCN1	ENSG00000142871|ENST00000451137|CCN1	ENSG00000142871|ENST00000451137|CCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.8210144042969	2	489.820953	977.627353	0.51109	0.00025034	-0.56001	-0.0002743	-0.048914	-2.3959E-05	489.82059197568805	49.933	0.5973	49.978	49.721	50.318	0.044891					41	22	2	0	0	0	0.20344	1	11530	11530		23.148	2.6948	1	617590			21751	4468	12051	12052	27946	27946					0.13764398242051357
LALVVTLLH	9	Unmodified	_LALVVTLLH_					0	0	0		ENSG00000142871|ENST00000451137|CCN1	ENSG00000142871|ENST00000451137|CCN1	ENSG00000142871|ENST00000451137|CCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.8207702636719	2	489.820953	977.627353	0.48208	0.00023613	-0.43241	-0.0002118	0.049674	2.4331E-05	489.82061223535635	49.924	0.58201	49.944	49.67	50.252	0.020691					48	21	3	0	0	0	0.20344	1	11508	11508		23.148	1.4018	1	709870			21752	4468	12051	12052	27947	27947					0.13764398242051357
LALYKQMSFL	10	Unmodified	_LALYKQMSFL_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89962405-89970614:+|nuORF;ENST00000566158.5_1_16:89962405-89965058:+|nuORF;ENST00000563636.5_1_16:89961526-89967207:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.5697021484375	3	405.226499	1212.65767	-0.0063522	-2.5741E-06	-1.5346	-0.00062185	-1.5409	-0.00062443	405.226070108366	23.711	0.68005	23.672	23.339	24.02	-0.038927					46	23	3	0	0	0	0.32033	1	3431	3431		4.1895	2.7344	1	65090			21753	4351	12052	12053	27948	27948					0.05984388844944988
LALYKQMSFL	10	Unmodified	_LALYKQMSFL_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89962405-89970614:+|nuORF;ENST00000566158.5_1_16:89962405-89965058:+|nuORF;ENST00000563636.5_1_16:89961526-89967207:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	405.226499	1212.65767	-0.25378	-0.00010284	-1.8313	-0.00074211	-2.0851	-0.00084495	405.2261607824407	23.615	0.52139	23.615	23.308	23.829	0	-0.044794	-0.00012091	NaN	4.1895	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67399			21754	4351	12052	12053							0.05984388844944988
LALYLPENQVL	11	Unmodified	_LALYLPENQVL_					0	0	0		ENSG00000149679|ENST00000279101|CABLES2	ENSG00000149679|ENST00000279101|CABLES2	ENSG00000149679|ENST00000279101|CABLES2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.8673095703125	2	636.863546	1271.71254	0.42272	0.00026922	-0.85409	-0.00054394	-0.43137	-0.00027472	636.8629711900139	32.771	1.0847	32.771	32.251	33.336	0					116	38	4	0	0	0	0.40129	1	6190	6190		13.615	0	1	1775500			21755	4889	12053	12054	27949	27949					0.08755098917163195
LALYRTDD	8	Unmodified	_LALYRTDD_					0	0	0		ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2;ENSG00000203879|ENST00000447750|GDI1	ENSG00000057608|ENST00000380191|GDI2;ENSG00000203879|ENST00000447750|GDI1	ENSG00000057608|ENST00000380191|GDI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.6689758300781	2	483.748182	965.481811	0.3245	0.00015698	-1.0275	-0.00049703	-0.70297	-0.00034006	483.74775705145714	26.987	0.39144	26.975	26.741	27.132	-0.011562					18	13	2	0	0	0	0.34218	1	4513	4513		9.3474	0	1	42057			21756	722;8190	12054	12055	27950	27950					-0.002311093448156498
LAMGLWPR	8	Unmodified	_LAMGLWPR_					0	0	0			REV__ENST00000532478.5_1_11:47196639-47197406:-|nuORF	REV__ENST00000532478.5_1_11:47196639-47197406:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2764892578125	2	472.262748	942.510943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.099	1	31.14	30.64	31.64	0.040991								0	0	0	0.35014	1	5767	5767		14.582	5.2343	1		+		21757	22034	12055	12056	27951	27951					0.037387564704886245
LAMRKNCSPIL	11	Unmodified	_LAMRKNCSPIL_					0	0	0		ENST00000369536.9_1_6:88240617-88255357:-|nuORF	ENST00000369536.9_1_6:88240617-88255357:-|nuORF	ENST00000369536.9_1_6:88240617-88255357:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.3431396484375	2	623.343943	1244.67333	0.38976	0.00024296	-0.45389	-0.00028293	-0.064129	-3.9974E-05	623.343605464686	71.938	1.0628	71.938	71.55	72.613	0					66	38	3	0	0	0	0.39234	1	18323	18323		12.241	12.241	1	388970			21758	9779	12056	12057	27952	27952					0.060783520903214594
LAMRKNCSPIL	11	Unmodified	_LAMRKNCSPIL_					0	0	0		ENST00000369536.9_1_6:88240617-88255357:-|nuORF	ENST00000369536.9_1_6:88240617-88255357:-|nuORF	ENST00000369536.9_1_6:88240617-88255357:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.3448486328125	2	623.343943	1244.67333	0.16609	0.00010353	-0.30601	-0.00019075	-0.13992	-8.7218E-05	623.3437460060044	71.98	1.091	72.037	71.513	72.604	0.056572					78	39	3	0	0	0	0.42346	1	18342	18342		8.1555	0.24537	1	501660			21759	9779	12056	12057	27953	27953					0.060783520903214594
LAMRKNCSPIL	11	Unmodified	_LAMRKNCSPIL_					0	0	0		ENST00000369536.9_1_6:88240617-88255357:-|nuORF	ENST00000369536.9_1_6:88240617-88255357:-|nuORF	ENST00000369536.9_1_6:88240617-88255357:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.3436889648438	2	623.343943	1244.67333	0.28571	0.0001781	-0.5305	-0.00033069	-0.24479	-0.00015259	623.3436178824073	72.051	1.2629	72.023	71.506	72.769	-0.027275					92	44	3	0	0	0	0.39802	1	18342	18342		11.495	11.495	1	527020			21760	9779	12056	12057	27954	27954					0.060783520903214594
LAMVPVSPF	9	Unmodified	_LAMVPVSPF_					0	0	0			REV__ENSG00000197299|ENST00000355112|BLM	REV__ENSG00000197299|ENST00000355112|BLM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2524719238281	2	480.764789	959.515025	-0.11436	-5.4979E-05	3.223	0.0015495	3.1087	0.0014945	480.7662760827191	28.178	0.47435	28.179	27.793	28.268	0.0004673					21	16	2	0	0	0	0.24913	1	4768	4768		12.532	2.3482	1	44008	+		21761	18725	12057	12058	27955	27955					0.03364801173552223
LAMVPVSPF	9	Unmodified	_LAMVPVSPF_					0	0	0			REV__ENSG00000197299|ENST00000355112|BLM	REV__ENSG00000197299|ENST00000355112|BLM	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	480.764789	959.515025	-0.19833	-9.5352E-05	3.8761	0.0018635	3.6778	0.0017681	480.766370613731	28.18	0.25333	28.18	27.954	28.207	0	0.00073285	0.0004519	NaN	12.532	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59158	+		21762	18725	12057	12058							0.03364801173552223
LANFALGDRWS	11	Unmodified	_LANFALGDRWS_					0	0	0			REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.8741455078125	2	625.319837	1248.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.483	1	98.476	97.976	98.976	-0.0068283								0	0	0	0.37609	1	26387	26387		2.4985	0	1		+		21763	16903	12058	12059	27956	27956					0.010753177662763846
LANIFKEEFW	10	Unmodified	_LANIFKEEFW_					0	0	0			REV__Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|67|2|sense	REV__Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|67|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.88543701171875	3	432.892284	1295.65502	0.18691	8.0913E-05	-0.013573	-5.8758E-06	0.17334	7.5037E-05	432.8923500743696	20.123	0.67987	20.067	19.816	20.496	-0.055693					62	24	4	0	0	0	0.40888	1	2563	2563		0.77653	0	1	662660	+		21764	22723	12059	12060	27957	27957					0.019022567116053324
LANINQPSK	9	Unmodified	_LANINQPSK_					0	0	0			REV__ENST00000209875.8_1_12:54634211-54634445:-|nuORF	REV__ENST00000209875.8_1_12:54634211-54634445:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2586975097656	2	492.777274	983.539994	0.20168	9.9383E-05	0.0066262	3.2652E-06	0.2083	0.00010265	492.7772006672267	25.958	0.44648	25.958	25.769	26.215	0					22	15	2	0	0	0	0.24993	1	4260	4260		13.042	13.042	1	112770	+		21765	19403	12060	12061	27958	27958					0.04756572300482276
LANLPSRERTS	11	Unmodified	_LANLPSRERTS_					0	0	0			REV__ZNF2|p.H387Lfs*38|1|0.19|ENSG00000275111|chr2:95181988-95181988|A/-|frameshift_variant	REV__ZNF2|p.H387Lfs*38|1|0.19|ENSG00000275111|chr2:95181988-95181988|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.787841796875	2	622.341301	1242.66805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.111	1	92.111	91.611	92.611	0								0	0	0	0.38137	1	24486	24486		1.0715	0	1		+		21766	23359	12061	12062	27959	27959					0.0564208782368496
LANNVTPAK	9	Unmodified	_LANNVTPAK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.27569580078125	2	464.266542	926.51853	0.023701	1.1004E-05	-0.098234	-4.5607E-05	-0.074533	-3.4603E-05	464.2664050370869	19.197	0.49323	19.141	18.876	19.369	-0.055693					22	16	2	0	0	0	0.26278	1	2124	2124		14.405	14.405	1	46767			21767	638	12062	12063	27960	27960					0.052331872717559236
LANNVTPAK	9	Unmodified	_LANNVTPAK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	464.266542	926.51853	-0.22922	-0.00010642	0.076661	3.5591E-05	-0.15256	-7.0828E-05	464.26651244203566	19.031	0.56056	19.031	18.79	19.35	0	-0.052185	0.0001207	NaN	14.405	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61897			21768	638	12062	12063							0.052331872717559236
LANNVTPAK	9	Unmodified	_LANNVTPAK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	464.266542	926.51853	-0.13099	-6.0814E-05	-0.11468	-5.3244E-05	-0.24567	-0.00011406	464.26648768757144	19.193	0.53709	19.077	18.838	19.375	-0.11592	-0.0062454	-5.6965E-05	NaN	14.405	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61314			21769	638	12062	12063							0.052331872717559236
LANNVTPAK	9	Unmodified	_LANNVTPAK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	464.266542	926.51853	0.023701	1.1004E-05	-0.098234	-4.5607E-05	-0.074533	-3.4603E-05	464.2664050370869	19.197	0.49323	19.141	18.876	19.369	-0.055693	0.05843	-4.1692E-05	NaN	14.405	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46767			21770	638	12062	12063							0.052331872717559236
LANPLHRKNGL	11	Unmodified	_LANPLHRKNGL_					0	0	0			REV__ARL8B|p.D133H|1|0.24|ENSG00000134108|chr3:5174041-5174041|G/C|missense_variant	REV__ARL8B|p.D133H|1|0.24|ENSG00000134108|chr3:5174041-5174041|G/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5787048339844	3	411.578923	1231.71494	-0.096775	-3.9831E-05	-0.33583	-0.00013822	-0.4326	-0.00017805	411.5787364973137	29.748	0.72927	29.762	29.507	30.236	0.013474					60	24	3	0	0	0	0.33094	1	5412	5412		7.4771	0	1	332650	+		21771	13114	12063	12064	27961	27961					0.10834992165518997
LANRQKKYKY	10	Unmodified	_LANRQKKYKY_					0	0	0		nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000266338|ENST00000581897|NBPF15;ENSG00000263956|ENST00000682118|NBPF11;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000268043|ENST00000698835|NBPF12;ENSG00000271383|ENST00000651566|NBPF19;nc|ENSG00000263956|Q86T75-2|NBPF11;ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1	nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000219481|ENST00000430580|NBPF1	nc|ENSG00000269713|P0DPF3-2|NBPF9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2735595703125	3	437.922578	1310.7459	-0.26852	-0.00011759	0.33116	0.00014502	0.062643	2.7433E-05	437.92287596529263	34.082	0.52962	34.149	34.092	34.622	0.06636					26	18	2	0	0	0	0.32068	1	6718	6718		1.7423	0	1	110160			21772	8690;8417	12064	12065	27962	27962					0.10296145479765073
LANRSHAELET	11	Unmodified	_LANRSHAELET_					0	0	0		nc|ENSG00000063660|P35052-2|GPC1;ENST00000469694.5_1_2:241381745-241403123:+|nuORF;ENSG00000063660|ENST00000264039|GPC1	nc|ENSG00000063660|P35052-2|GPC1	nc|ENSG00000063660|P35052-2|GPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.8172607421875	2	620.817658	1239.62076	0.23097	0.00014339	-0.25608	-0.00015898	-0.025118	-1.5594E-05	620.8175469668175	17.279	1.3956	17.218	16.887	18.283	-0.060429					154	49	5	0	0	0	0.4745	1	1748	1748		0	0	1	3090000			21773	778	12065	12066	27963	27963					0.010538085527059593
LAPAARTR	8	Unmodified	_LAPAARTR_					0	0	0			REV__ENSG00000119681|ENST00000261978|LTBP2	REV__ENSG00000119681|ENST00000261978|LTBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.26129150390625	2	428.261594	854.508634	-0.044126	-1.8897E-05	-0.2452	-0.00010501	-0.28933	-0.00012391	428.26149196599977	80.59	2.1301	80.563	80.06	82.19	-0.026825					150	85	2	0	0	0	0.43043	1	20916	20916		12.532	3.1841	1	14387000	+		21774	15051	12066	12067	27964	27964					0.0755604405703707
LAPADGTVELV	11	Unmodified	_LAPADGTVELV_					0	0	0		ENSG00000025708|ENST00000252029|TYMP	ENSG00000025708|ENST00000252029|TYMP	ENSG00000025708|ENST00000252029|TYMP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7976684570312	2	542.797872	1083.58119	0.074706	4.055E-05	-0.2085	-0.00011318	-0.1338	-7.2625E-05	542.7976427020774	99.14	1.2866	99.14	98.646	99.933	0					453	162	4	0	0	0	0.38623	7	26485	26421;26455;26485;26520;26551;26577;26670		13.042	7.3106	1	854180			21775	533	12067	12068	27965;27966;27967;27968;27969;27970;27971	27967					0.042742885492771165
LAPAGIPAVAL	11	Unmodified	_LAPAGIPAVAL_					0	0	0		ENSG00000166145|ENST00000562057|SPINT1;nc|ENSG00000166145|O43278|SPINT1	ENSG00000166145|ENST00000562057|SPINT1	ENSG00000166145|ENST00000562057|SPINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.8216857910156	2	496.810585	991.606617	0.48691	0.0002419	-0.032743	-1.6267E-05	0.45416	0.00022563	496.8106122602728	35.903	0.41071	35.989	35.73	36.14	0.086246					22	14	2	0	0	0	0.36487	1	7251	7251		15.847	2.3393	1	230650			21776	6032	12068	12069	27972	27972					0.1104780786236006
LAPARVFLN	9	Unmodified	_LAPARVFLN_					0	0	0			REV__ENST00000437198.6_1_16:14711485-14721018:-|nuORF	REV__ENST00000437198.6_1_16:14711485-14721018:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7987060546875	2	500.800552	999.58655	0.53909	0.00026998	-2.797	-0.0014007	-2.2579	-0.0011307	500.79839382098555	86.587	0.8662	86.587	86.072	86.938	0					105	34	4	0	0	0	0.30623	1	22774	22774		7.9102	0.62092	1	287250	+		21777	20847	12069	12070	27973	27973					0.08674056922427553
LAPAVGRPRR	10	Unmodified	_LAPAVGRPRR_					0	0	0			REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF	REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.2863159179688	2	546.841074	1091.66759	0.040901	2.2366E-05	-0.25907	-0.00014167	-0.21817	-0.00011931	546.8400938547545	112.2	0.089409	112.2	112.17	112.26	0					14	11	2	0	0	0	0.32123	1	29167	29167		1.6526	0	1	20128	+		21778	19530	12070	12071	27974	27974					0.12542757685173456
LAPAVGRPRR	10	Unmodified	_LAPAVGRPRR_					0	0	0			REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF	REV__ENST00000252136.11_2_22:20104550-20104601:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	546.841074	1091.66759	0.33942	0.00018561	-1.0476	-0.00057286	-0.70815	-0.00038725	546.8398430875635	112.11	0.11357	112.1	112.04	112.16	-0.015625	-0.053933	-0.00011958	NaN	1.6526	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38234	+		21779	19530	12070	12071							0.12542757685173456
LAPCLQLYCS	10	Unmodified	_LAPCLQLYCS_					0	0	0			REV__ENSG00000162771|ENST00000294829|GARIN4	REV__ENSG00000162771|ENST00000294829|GARIN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7697143554688	2	555.769745	1109.52494	0.15785	8.7731E-05	-0.35382	-0.00019664	-0.19597	-0.00010891	555.7696206088358	69.333	0.59457	69.311	69.026	69.621	-0.022087					58	20	4	0	0	0	0.30958	1	17496	17496		19.257	1.1106	1	900110	+		21780	17007	12071	12072	27975	27975					-0.02544378883385434
LAPEFDYIEV	10	Unmodified	_LAPEFDYIEV_					0	0	0			REV__nc|ENSG00000104679|Q9Y3T6-3|R3HCC1	REV__nc|ENSG00000104679|Q9Y3T6-3|R3HCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.2986450195312	2	598.297704	1194.58086	0.36098	0.00021597	0.53239	0.00031853	0.89337	0.0005345	598.2979614048461	23.995	0.63313	23.995	23.734	24.367	0					35	21	2	0	0	0	0.41085	1	3610	3610		1.4819	0	1	121500	+		21781	14414	12072	12073	27976	27976					-0.008651311705762055
LAPLAKVI	8	Unmodified	_LAPLAKVI_					0	0	0		ENST00000455134.1_1_10:93426952-93427153:-|nuORF;ENST00000515281.1_1_11:88141588-88141981:-|nuORF;ENST00000423411.2_1_6:135940529-135940997:-|nuORF;nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENSG00000105679|ENST00000222286|GAPDHS	ENST00000455134.1_1_10:93426952-93427153:-|nuORF	ENST00000455134.1_1_10:93426952-93427153:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.7838134765625	2	412.783839	823.553125	0.39687	0.00016382	-0.12917	-5.3319E-05	0.2677	0.0001105	412.7836807442285	50.635	1.1848	50.635	50.296	51.481	0					95	43	4	0	0	0	0.042326	2	11770	11725;11770		81.864	7.4677	1	3101600			21782	2009	12073	12074	27977;27978	27978					0.13429055150515978
LAPLAKVI	8	Unmodified	_LAPLAKVI_					0	0	0		ENST00000455134.1_1_10:93426952-93427153:-|nuORF;ENST00000515281.1_1_11:88141588-88141981:-|nuORF;ENST00000423411.2_1_6:135940529-135940997:-|nuORF;nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENSG00000105679|ENST00000222286|GAPDHS	ENST00000455134.1_1_10:93426952-93427153:-|nuORF	ENST00000455134.1_1_10:93426952-93427153:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.7838439941406	2	412.783839	823.553125	0.70768	0.00029212	-0.50925	-0.00021021	0.19843	8.1909E-05	412.78354273550764	50.652	1.1594	50.696	50.343	51.502	0.044891					102	42	4	0	0	0	0.026049	2	11763	11717;11763		93.883	7.7621	1	3300400			21783	2009	12073	12074	27979;27980	27980					0.13429055150515978
LAPLAKVI	8	Unmodified	_LAPLAKVI_					0	0	0		ENST00000455134.1_1_10:93426952-93427153:-|nuORF;ENST00000515281.1_1_11:88141588-88141981:-|nuORF;ENST00000423411.2_1_6:135940529-135940997:-|nuORF;nc|ENSG00000111640|P04406-2|GAPDH;ENSG00000111640|ENST00000229239|GAPDH;ENSG00000105679|ENST00000222286|GAPDHS	ENST00000455134.1_1_10:93426952-93427153:-|nuORF	ENST00000455134.1_1_10:93426952-93427153:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.7837829589844	2	412.783839	823.553125	0.73969	0.00030533	-0.60747	-0.00025076	0.13221	5.4575E-05	412.78349665420035	50.649	1.1834	50.67	50.361	51.544	0.020691					112	44	4	0	0	0	0.042326	2	11755	11706;11755		81.864	14.804	1	3351000			21784	2009	12073	12074	27981;27982	27982					0.13429055150515978
LAPLFLTFY	9	Unmodified	_LAPLFLTFY_					0	0	0			REV__nc|ENSG00000138767|Q96LI5-2|CNOT6L	REV__nc|ENSG00000138767|Q96LI5-2|CNOT6L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8077392578125	2	542.807511	1083.60047	0.77384	0.00042005	0.16144	8.7628E-05	0.93528	0.00050768	542.807442506029	78.395	3.3081	78.395	77.204	80.513	0					287	127	4	0	0	0	0.30623	2	20146	20146;20197		7.9102	7.9102	1	1734500	+		21785	15955	12074	12075	27983;27984	27983					0.06201289630848805
LAPLFLTFY	9	Unmodified	_LAPLFLTFY_					0	0	0			REV__nc|ENSG00000138767|Q96LI5-2|CNOT6L	REV__nc|ENSG00000138767|Q96LI5-2|CNOT6L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8079833984375	2	542.807511	1083.60047	0.75743	0.00041114	0.28766	0.00015615	1.0451	0.00056728	542.8075322403537	78.36	2.9728	78.419	77.513	80.486	0.058159					343	116	4	0	0	0	0.33018	1	20133	20133		4.3292	0	1	1386000	+		21786	15955	12074	12075	27985	27985					0.06201289630848805
LAPLIQVI	8	Unmodified	_LAPLIQVI_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;nc|ENSG00000130787|O75146-2|HIP1R;ENST00000452196.6_1_12:123320097-123341792:+|nuORF;ENST00000535831.5_1_12:123319379-123341792:+|nuORF;nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENSG00000127946|ENST00000336926|HIP1	ENSG00000130787|ENST00000253083|HIP1R;nc|ENSG00000127946|O00291-3|HIP1	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.7890319824219	2	433.789121	865.56369	0.13734	5.9575E-05	-0.076057	-3.2993E-05	0.06128	2.6583E-05	433.7889377093479	78.916	1.2039	78.916	78.486	79.69	0					129	48	4	0	0	0	0.033363	3	20443	20399;20443;20490		86.121	26.326	1	1571800			21787	3515;3340	12075	12076	27986;27987;27988	27987					0.12553037804946143
LAPLIQVI	8	Unmodified	_LAPLIQVI_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;nc|ENSG00000130787|O75146-2|HIP1R;ENST00000452196.6_1_12:123320097-123341792:+|nuORF;ENST00000535831.5_1_12:123319379-123341792:+|nuORF;nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENSG00000127946|ENST00000336926|HIP1	ENSG00000130787|ENST00000253083|HIP1R;nc|ENSG00000127946|O00291-3|HIP1	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.78900146484375	2	433.789121	865.56369	0.16497	7.1562E-05	-0.12599	-5.4653E-05	0.038979	1.6909E-05	433.78892071346354	78.872	1.5263	78.931	78.139	79.666	0.058151					140	62	4	0	0	0	0.049524	3	20426	20381;20426;20471		78.445	18.65	1	1543900			21788	3515;3340	12075	12076	27989;27990;27991	27990					0.12553037804946143
LAPLIQVI	8	Unmodified	_LAPLIQVI_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;nc|ENSG00000130787|O75146-2|HIP1R;ENST00000452196.6_1_12:123320097-123341792:+|nuORF;ENST00000535831.5_1_12:123319379-123341792:+|nuORF;nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENSG00000127946|ENST00000336926|HIP1	ENSG00000130787|ENST00000253083|HIP1R;nc|ENSG00000127946|O00291-3|HIP1	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.78900146484375	2	433.789121	865.56369	0.22814	9.8965E-05	-0.16818	-7.2954E-05	0.059961	2.6011E-05	433.7889052809098	78.935	1.1983	78.905	78.552	79.75	-0.030434					124	48	4	0	0	0	0.049524	3	20442	20398;20442;20490		78.445	17.366	1	1769800			21789	3515;3340	12075	12076	27992;27993;27994	27993					0.12553037804946143
LAPLPRQVF	9	Unmodified	_LAPLPRQVF_					0	0	0			REV__nc|ENSG00000022976|A8K0R7|ZNF839	REV__nc|ENSG00000022976|A8K0R7|ZNF839	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2897338867188	2	520.816202	1039.61785	0.61808	0.00032191	-0.88829	-0.00046264	-0.27021	-0.00014073	520.8157779442806	53.159	0.46742	53.216	52.99	53.457	0.056259					40	16	3	0	0	0	0.24311	1	12587	12587		7.2892	2.5332	1	1299100	+		21790	13467	12076	12077	27995	27995					0.09962629956521596
LAPPVQHLR	9	Unmodified	_LAPPVQHLR_					0	0	0			REV__ENST00000373954.10_1_1:28052521-28054029:+|nuORF	REV__ENST00000373954.10_1_1:28052521-28054029:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2534790039062	2	515.811451	1029.60835	0.48189	0.00024856	-0.95578	-0.000493	-0.4739	-0.00024444	515.8107797378541	33.402	0.63517	33.468	33.239	33.875	0.06636					53	22	3	0	0	0	0.24311	1	6490	6490		16.942	0	1	452340	+		21791	20455	12077	12078	27996	27996					0.09472861670974453
LAPPVQHLR	9	Unmodified	_LAPPVQHLR_					0	0	0			REV__ENST00000373954.10_1_1:28052521-28054029:+|nuORF	REV__ENST00000373954.10_1_1:28052521-28054029:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	515.811451	1029.60835	0.46663	0.00024069	-1.089	-0.0005617	-0.62234	-0.00032101	515.8108053643749	33.571	0.6302	33.571	33.31	33.94	0	0.068711	-0.00028395	NaN	16.942	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333560	+		21792	20455	12077	12078							0.09472861670974453
LAPQTPPGL	9	Unmodified	_LAPQTPPGL_					0	0	0			REV__ENST00000597467.1_1_19:7701993-7703991:+|nuORF	REV__ENST00000597467.1_1_19:7701993-7703991:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.24365234375	2	447.258185	892.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.217	1	62.314	61.814	62.814	0.096985								0	0	0	0.24077	1	15329	15329		9.3474	1.4373	1		+		21793	22612	12078	12079	27997	27997					0.05126686385801804
LAPRGAEPLL	10	Unmodified	_LAPRGAEPLL_					0	0	0			REV__ENST00000301770.10_1_11:61034988-61050313:-|nuORF	REV__ENST00000301770.10_1_11:61034988-61050313:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.8113403320312	2	518.811116	1035.60768	0.34917	0.00018115	1.2266	0.00063637	1.5758	0.00081752	518.811724954531	53	1.115	52.991	52.679	53.794	-0.0096054					79	41	2	0	0	0	0.093201	1	12428	12428		49.554	13.048	1	15719000	+		21794	19827	12079	12080	27998	27998					0.09130022231283874
LAPRGAEPLL	10	Unmodified	_LAPRGAEPLL_					0	0	0			REV__ENST00000301770.10_1_11:61034988-61050313:-|nuORF	REV__ENST00000301770.10_1_11:61034988-61050313:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	518.811116	1035.60768	0.47284	0.00024531	1.5409	0.00079943	2.0137	0.0010447	518.8118138334547	52.954	1.0186	52.954	52.63	53.648	0	-0.021079	0.00016507	NaN	49.554	72	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14434000	+		21795	19827	12079	12080							0.09130022231283874
LAPRGAEPLL	10	Unmodified	_LAPRGAEPLL_					0	0	0			REV__ENST00000301770.10_1_11:61034988-61050313:-|nuORF	REV__ENST00000301770.10_1_11:61034988-61050313:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	518.811116	1035.60768	0.5967	0.00030958	1.5049	0.00078077	2.1016	0.0010903	518.8117288545873	52.924	0.97363	52.98	52.637	53.611	0.056259	0.005453	0.00012774	NaN	49.554	85	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15106000	+		21796	19827	12079	12080							0.09130022231283874
LAPRREPSRL	10	Unmodified	_LAPRREPSRL_					0	0	0			REV__ENST00000511771.1_1_4:189020146-189026726:-|nuORF	REV__ENST00000511771.1_1_4:189020146-189026726:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8557739257812	2	597.856921	1193.69929	0.34174	0.00020431	-0.6478	-0.00038729	-0.30606	-0.00018298	597.8565000793234	99.796	0.19079	99.789	99.668	99.859	-0.006897					35	25	2	0	0	0	0.32072	1	26695	26695		2.9952	0.49676	1	142090	+		21797	21812	12080	12081	27999	27999					0.11018705648461946
LAPRRGLPA	9	Unmodified	_LAPRRGLPA_					0	0	0		ENSG00000269855|ENST00000601382|RNF225	ENSG00000269855|ENST00000601382|RNF225	ENSG00000269855|ENST00000601382|RNF225	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7987976074219	2	475.798343	949.582134	0.3837	0.00018257	0.44022	0.00020945	0.82392	0.00039202	475.7984655437799	41.979	0.69093	42.069	41.853	42.544	0.090252					42	24	2	0	0	0	0.24581	1	9095	9095		16.942	2.3606	1	1480100			21798	8693	12081	12082	28000	28000					0.10532592499509974
LAPRRLMYQK	10	Unmodified	_LAPRRLMYQK_					0	0	0			REV__ENSG00000171103|ENST00000306108|TRMT61B	REV__ENSG00000171103|ENST00000306108|TRMT61B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3748779296875	2	638.371349	1274.72815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.193	1	97.188	96.688	97.688	-0.0055466								0	0	0	0.38166	1	26014	26014		1.4819	0.15237	1		+		21799	17620	12082	12083	28001	28001					0.10177106953233306
LAPSLRQT	8	Unmodified	_LAPSLRQT_					0	0	0			REV__ENST00000321196.7_1_12:83290011-83290062:+|nuORF	REV__ENST00000321196.7_1_12:83290011-83290062:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.769287109375	2	443.261259	884.507966	-0.16711	-7.4072E-05	0.78572	0.00034828	0.61861	0.00027421	443.26142052867044	12.848	0.48587	12.749	12.611	13.097	-0.099291					34	16	3	0	0	0	0.34353	1	345	345		4.756	4.756	1	282220	+		21800	19966	12083	12084	28002	28002					0.0610920461731439
LAPTLRRLS	9	Unmodified	_LAPTLRRLS_					0	0	0			REV__ENST00000382882.7_2_4:2011010-2011436:-|nuORF	REV__ENST00000382882.7_2_4:2011010-2011436:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.3258056640625	2	513.824558	1025.63456	0.27556	0.00014159	0.31651	0.00016263	0.59207	0.00030422	513.8248352235285	33.355	1.3233	33.355	33.039	34.362	0					104	47	4	0	0	0	0.27532	1	6532	6532		12.532	2.4576	1	3612900	+		21801	20574	12084	12085	28003	28003					0.12277130842471706
LAPTTLRGRAR	11	Unmodified	_LAPTTLRGRAR_					0	0	0		ENST00000394967.2_1_2:175202164-175202371:+|nuORF	ENST00000394967.2_1_2:175202164-175202371:+|nuORF	ENST00000394967.2_1_2:175202164-175202371:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3702392578125	2	606.370195	1210.72584	0.64072	0.00038851	-0.095332	-5.7806E-05	0.54539	0.00033071	606.36993872621	86.778	1.4348	86.778	86.149	87.584	0					145	59	4	0	0	0	0.43198	2	22856	22856;22902		8.7454	0	1	1446600			21802	10080	12085	12086	28004;28005	28004					0.12890394539772387
LAPTTLRGRAR	11	Unmodified	_LAPTTLRGRAR_					0	0	0		ENST00000394967.2_1_2:175202164-175202371:+|nuORF	ENST00000394967.2_1_2:175202164-175202371:+|nuORF	ENST00000394967.2_1_2:175202164-175202371:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3700561523438	2	606.370195	1210.72584	0.54971	0.00033333	-0.35687	-0.00021639	0.19284	0.00011693	606.3698124394905	86.859	2.3907	86.946	86.728	89.119	0.08709					235	111	4	0	0	0	0.47713	1	22982	22982		2.7352	1.2533	1	1359800			21803	10080	12085	12086	28006	28006					0.12890394539772387
LAPTTLRGRAR	11	Unmodified	_LAPTTLRGRAR_					0	0	0		ENST00000394967.2_1_2:175202164-175202371:+|nuORF	ENST00000394967.2_1_2:175202164-175202371:+|nuORF	ENST00000394967.2_1_2:175202164-175202371:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3704223632812	2	606.370195	1210.72584	0.45985	0.00027884	-0.18945	-0.00011488	0.2704	0.00016396	606.3699776312902	86.955	2.1455	86.949	86.188	88.334	-0.0056229					252	99	4	0	0	0	0.43809	4	22794	22794;22988;23032;23119		7.609	2.7352	1	1359200			21804	10080	12085	12086	28007;28008;28009;28010	28007					0.12890394539772387
LAPVKNQLQI	10	Unmodified	_LAPVKNQLQI_					0	0	0		nc|ENSG00000149557|Q99689-2|FEZ1;ENST00000532981.1_1_11:125333376-125359673:-|nuORF;ENST00000392709.8_1_11:125325619-125359673:-|nuORF;ENSG00000149557|ENST00000278919|FEZ1	nc|ENSG00000149557|Q99689-2|FEZ1	nc|ENSG00000149557|Q99689-2|FEZ1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3435668945312	2	562.345323	1122.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.009	1	83.009	82.509	83.509	0								0	0	0	0.36922	1	21697	21697		6.7232	0.51738	1				21805	4876	12086	12087	28011	28011					0.11966266811123205
LAPVTLAAI	9	Unmodified	_LAPVTLAAI_					0	0	0			REV__ENST00000494318.5_1_8:76320198-76402347:+|nuORF	REV__ENST00000494318.5_1_8:76320198-76402347:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.8262023925781	2	434.778754	867.542954	0.070347	3.0585E-05	1.8902	0.0008218	1.9605	0.00085239	434.7794424513695	41.771	0.91526	41.861	41.738	42.653	0.090248					56	34	2	0	0	0	0.22596	1	9040	9040		21.747	4.8044	1	814060	+		21806	21649	12087	12088	28012	28012					0.10388447425270897
LAPVTLAAI	9	Unmodified	_LAPVTLAAI_					0	0	0			REV__ENST00000494318.5_1_8:76320198-76402347:+|nuORF	REV__ENST00000494318.5_1_8:76320198-76402347:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8259582519531	2	434.778754	867.542954	0.19861	8.635E-05	1.8896	0.00082156	2.0882	0.00090791	434.77956136757115	41.659	0.71426	41.756	41.645	42.36	0.096626					45	27	2	0	0	0	0.21905	1	9075	9075		11.64	0	1	1332400	+		21807	21649	12087	12088	28013	28013					0.10388447425270897
LAQACFRVV	9	Unmodified	_LAQACFRVV_					0	0	0			REV__ENSG00000159495|ENST00000452443|TGM7	REV__ENSG00000159495|ENST00000452443|TGM7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.7657165527344	2	503.778762	1005.54297	0.2182	0.00010993	-2.3625	-0.0011902	-2.1443	-0.0010803	503.7783145364042	23.024	0.72382	22.979	22.501	23.225	-0.044867					73	25	4	0	0	0	0.28674	1	3320	3320		10.824	2.2306	1	112660	+		21808	16857	12088	12089	28014	28014					0.040421241536364505
LAQEWDQPER	10	Unmodified	_LAQEWDQPER_					0	0	0		ENST00000389262.8_1_22:19048277-19109719:-|nuORF;nc|ENSG00000070413|P98153-3|DGCR2;nc|ENSG00000070413|P98153-2|DGCR2;ENSG00000070413|ENST00000263196|DGCR2	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	ENST00000389262.8_1_22:19048277-19109719:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.5749206542969	3	424.538681	1270.59421	-0.34701	-0.00014732	3.5326	0.0014997	3.1856	0.0013524	424.8741761064474	25.481	0.33126	25.45	25.319	25.65	-0.03141					22	11	3	0	0	0	0.32009	1	4059	4059		1.9064	0.57673	1	36523			21809	925	12089	12090	28015	28015					-0.030258803386232103
LAQFPFHELF	10	Unmodified	_LAQFPFHELF_					0	0	0		nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF	nc|ENSG00000152223|Q9HCE0-2|EPG5	nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.88519287109375	3	416.885241	1247.63389	-0.22989	-9.5839E-05	0.16343	6.8132E-05	-0.066461	-2.7707E-05	416.8852184630907	61.297	0.73236	61.297	61.128	61.86	0					52	27	3	0	0	0	0.38522	1	15062	15062		6.1918	1.4759	1	831290			21810	5007	12090	12091	28016	28016					0.01998291402742325
LAQGAAKRV	9	Unmodified	_LAQGAAKRV_					0	0	0			REV__nc|ENSG00000007516|O94812-7|BAIAP3	REV__nc|ENSG00000007516|O94812-7|BAIAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7666931152344	2	457.282526	912.550499	-0.022702	-1.0381E-05	-2.0609	-0.00094239	-2.0836	-0.00095277	457.28133270442737	15.887	0.39983	15.825	15.575	15.975	-0.062533					27	13	3	0	0	0	0.2451	1	1178	1178		15.847	2.3393	1	84956	+		21811	13387	12091	12092	28017	28017					0.09072599745559273
LAQIVNPLQNI	11	Unmodified	_LAQIVNPLQNI_					0	0	0			REV__MSH2|p.L805Hfs*4|1|0.08|ENSG00000095002|chr2:47478474-47478475|-/A|frameshift_variant	REV__MSH2|p.L805Hfs*4|1|0.08|ENSG00000095002|chr2:47478474-47478475|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.56927490234375	3	408.243317	1221.70812	-0.088831	-3.6265E-05	-3.2339	-0.0013202	-3.3227	-0.0013565	408.24191754104385	16.226	0.23038	16.164	15.975	16.205	-0.062534					10	7	2	0	0	0	0.33334	1	1244	1244		1.2148	0.51716	1	19361	+		21812	14095	12092	12093	28018	28018					0.10613634494279722
LAQLNRAVQ	9	Unmodified	_LAQLNRAVQ_					0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3191223144531	2	506.79854	1011.58253	0.046387	2.3509E-05	-0.86154	-0.00043663	-0.81515	-0.00041312	506.79800198643017	28.33	0.36947	28.33	28.153	28.522	0					18	12	2	0	0	0	0.21905	1	4950	4950		16.942	0	1	130300			21813	7276	12093	12094	28019	28019					0.0771996742871579
LAQLQQKQQ	9	Unmodified	_LAQLQQKQQ_					0	0	0		ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7748413085938	2	542.809105	1083.60366	0.41304	0.0002242	-0.75372	-0.00040912	-0.34068	-0.00018492	542.8081218494406	25.113	0.39773	25.113	24.93	25.328	0					18	13	2	0	0	0	0.26168	1	3900	3900		1.8442	0	1	58047			21814	3932	12094	12095	28020	28020					0.06519932737569434
LAQLQQKQQ	9	Unmodified	_LAQLQQKQQ_					0	0	0		ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	542.809105	1083.60366	0.35878	0.00019475	-0.3366	-0.00018271	0.022176	1.2037E-05	542.808400023824	25.201	0.36819	25.145	24.946	25.314	-0.055931	0.015912	9.9821E-05	NaN	1.8442	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71020			21815	3932	12094	12095							0.06519932737569434
LAQLTGSK	8	Unmodified	_LAQLTGSK_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.8912048339844	2	409.242535	816.470518	-0.27258	-0.00011155	0.054487	2.2298E-05	-0.2181	-8.9255E-05	409.2424523000619	13.3	0.37201	13.2	13.069	13.441	-0.099291					22	12	3	0	0	0	0.34313	1	372	372		6.7232	0	1	127730			21816	1012	12095	12096	28021	28021					0.05494113351721808
LAQMFQLR	8	Unmodified	_LAQMFQLR_					0	0	0			REV__nc|ENSG00000292336|P46597-2|ASMT	REV__nc|ENSG00000292336|P46597-2|ASMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.76556396484375	2	503.778762	1005.54297	0.10597	5.3383E-05	-2.1731	-0.0010948	-2.0672	-0.0010414	503.7784049944112	22.948	0.83376	22.948	22.39	23.224	0					71	28	4	0	0	0	0.43043	1	3380	3380		12.532	1.7076	1	104320	+		21817	18652	12096	12097	28022	28022					0.04042124153647819
LAQQLALA	8	Unmodified	_LAQQLALA_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.90826416015625	2	414.252903	826.491253	-0.14118	-5.8483E-05	-0.26958	-0.00011168	-0.41076	-0.00017016	414.2530591398236	24.993	0.44024	24.962	24.796	25.237	-0.031408					28	14	3	0	0	0	0.3439	1	3867	3867		2.8892	0	1	80179	+		21818	17183	12097	12098	28023	28023					0.07106703731369635
LAQRFAAR	8	Unmodified	_LAQRFAAR_					0	0	0			REV__ENST00000435200.2_1_16:85833044-85833191:-|nuORF	REV__ENST00000435200.2_1_16:85833044-85833191:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.282470703125	2	466.774868	931.535184	0.25231	0.00011777	-1.7601	-0.00082157	-1.5078	-0.0007038	466.77392180934544	17.186	0.67139	17.125	16.917	17.588	-0.060429					42	23	2	0	0	0	0.34337	1	1624	1624		5.2307	0	1	94181	+		21819	20993	12098	12099	28024	28024					0.06667732948369576
LAQVKPTVT	9	Unmodified	_LAQVKPTVT_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN	REV__ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.3022766113281	2	478.792392	955.570232	0.25924	0.00012412	-0.091777	-4.3942E-05	0.16747	8.0182E-05	478.7922937580547	44.198	0.57224	44.273	44.011	44.583	0.075047					32	20	2	0	0	0	0.24848	1	9847	9847		13.906	0	1	372740	+		21820	16705	12099	12100	28025	28025					0.09066930965661868
LARAADPSVL	10	Unmodified	_LARAADPSVL_					0	0	0		ENST00000334286.7_1_13:78492715-78492892:-|nuORF	ENST00000334286.7_1_13:78492715-78492892:-|nuORF	ENST00000334286.7_1_13:78492715-78492892:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.79290771484375	2	506.792924	1011.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.982	1	36.982	36.482	37.482	0								0	0	0	0.22862	1	7569	7569		36.506	1.5741	1				21821	9465	12100	12101	28026	28026					0.06597145334569632
LARADKGKREK	11	Unmodified	_LARADKGKREK_					0	0	0			REV__ENSG00000105989|ENST00000265441|WNT2	REV__ENSG00000105989|ENST00000265441|WNT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.921142578125	3	424.589599	1270.74697	-0.22089	-9.3786E-05	-0.070288	-2.9844E-05	-0.29117	-0.00012363	424.58955449258553	18.622	1.2201	18.622	17.991	19.211	0					67	42	2	0	0	0	0.3325	1	1969	1969		4.1166	0.52957	1	264860	+		21822	14497	12101	12102	28027	28027					0.12242359848664819
LARAKSIPTK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LARAKSIPTK_					1	0	0		ENST00000428400.5_1_X:47085983-47086499:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16	ENST00000428400.5_1_X:47085983-47086499:+|nuORF	ENST00000428400.5_1_X:47085983-47086499:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8507690429688	2	563.850773	1125.68699	0.5217	0.00029416	-0.51516	-0.00029048	0.0065414	3.6883E-06	563.850397535059	40.618	0.79474	40.71	40.343	41.138	0.09267					85	29	4	0	0	0	0.058058	1	8689	8689		57.249	9.6547	1	1855200			21823	1755	12102	12103	28028	28028					0.12917669185412706
LARAKSIPTK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LARAKSIPTK_					1	0	0		ENST00000428400.5_1_X:47085983-47086499:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16	ENST00000428400.5_1_X:47085983-47086499:+|nuORF	ENST00000428400.5_1_X:47085983-47086499:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.850830078125	2	563.850773	1125.68699	0.28271	0.00015941	-0.2447	-0.00013797	0.038015	2.1435E-05	563.8505529242748	40.591	0.8911	40.69	40.26	41.151	0.099407					87	32	4	0	0	0	0.058058	1	8671	8671		57.249	9.6547	1	2025300			21824	1755	12102	12103	28029	28029					0.12917669185412706
LARALPGL	8	Unmodified	_LARALPGL_					0	0	0			REV__ENSG00000174165|ENST00000310442|ZDHHC24	REV__ENSG00000174165|ENST00000310442|ZDHHC24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.8978576660156	2	405.763438	809.512323	0.1642	6.6625E-05	0.17477	7.0917E-05	0.33897	0.00013754	405.7634247852417	47.985	0.89779	48.028	47.797	48.695	0.043324					69	33	3	0	0	0	0.32778	1	11062	11062		20.871	0	1	3931300	+		21825	17817	12103	12104	28030	28030					0.09994713830894852
LARAPSAAL	9	Unmodified	_LARAPSAAL_					0	0	0			REV__ENSG00000221890|ENST00000333039|NPTXR	REV__ENSG00000221890|ENST00000333039|NPTXR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8260803222656	2	435.263802	868.513051	-0.3745	-0.00016301	0.11373	4.9505E-05	-0.26077	-0.0001135	435.26376970519306	42.375	0.45512	42.375	42.251	42.706	0					30	16	3	0	0	0	0.24289	1	9194	9194		13.042	1.4022	1	508710	+		21826	19096	12104	12105	28031	28031					0.07353508479945958
LARAPSAAL	9	Unmodified	_LARAPSAAL_					0	0	0			REV__ENSG00000221890|ENST00000333039|NPTXR	REV__ENSG00000221890|ENST00000333039|NPTXR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	435.263802	868.513051	0.051631	2.2473E-05	-0.19953	-8.685E-05	-0.1479	-6.4377E-05	435.2636301584634	42.142	0.49045	42.233	42.037	42.527	0.091362	-0.092692	-0.00011543	NaN	13.042	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432980	+		21827	19096	12104	12105							0.07353508479945958
LARAVGEPMR	10	Unmodified	_LARAVGEPMR_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.305908203125	2	550.305675	1098.5968	0.43171	0.00023757	-1.7079	-0.00093989	-1.2762	-0.00070231	550.3037256762793	19.565	0.92285	19.449	19.145	20.068	-0.11592					69	31	3	0	0	0	0.40403	1	2295	2295		2.7352	0.43246	1	132230			21828	7871	12105	12106	28032	28032					0.05144296585331176
LARDLPAVL	9	Unmodified	_LARDLPAVL_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.80853271484375	2	484.300384	966.586216	0.33714	0.00016328	-2.8524	-0.0013814	-2.5153	-0.0012182	484.30030626950503	47.475	0.69337	47.523	47.11	47.804	0.048302					70	25	3	0	0	0	0.19839	1	10751	10751		28.487	6.7402	1	918150			21829	519	12106	12107	28033	28033					0.10158637202562204
LARDLPAVL	9	Unmodified	_LARDLPAVL_					0	0	0		ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	ENSG00000023171|ENST00000635736|GRAMD1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.80853271484375	2	484.300384	966.586216	0.77692	0.00037626	-2.9897	-0.0014479	-2.2128	-0.0010717	484.30008280903536	47.453	0.68885	47.496	47.082	47.771	0.04332					64	25	3	0	0	0	0.1854	1	10748	10748		32.305	4.1323	1	835430			21830	519	12106	12107	28034	28034					0.10158637202562204
LARDPEPLL	9	Unmodified	_LARDPEPLL_					0	0	0			REV__ENST00000492244.5_1_1:155288033-155288472:+|nuORF	REV__ENST00000492244.5_1_1:155288033-155288472:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2955322265625	2	512.295299	1022.57605	0.32551	0.00016676	-1.2419	-0.0006362	-0.91636	-0.00046945	512.2946955796148	71.285	0.57381	71.261	70.999	71.572	-0.024864					33	20	2	0	0	0	0.26612	1	18095	18095		13.906	1.3745	1	774600	+		21831	21621	12107	12108	28035	28035					0.06566029477335178
LARHFNLV	8	Unmodified	_LARHFNLV_					0	0	0			REV__nc|ENSG00000197506|Q9HAS3-2|SLC28A3	REV__nc|ENSG00000197506|Q9HAS3-2|SLC28A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8003845214844	2	485.285069	968.555585	0.27797	0.00013489	-1.3845	-0.00067188	-1.1065	-0.00053699	485.2843223290442	47.343	0.21518	47.396	47.3	47.515	0.05257					9	7	2	0	0	0	0.33995	1	10719	10719		10.183	0	1	110870	+		21832	18741	12108	12109	28036	28036					0.07004903608174118
LARHHILH	8	Unmodified	_LARHHILH_					0	0	0		nc|ENSG00000198482|Q8N4W9-2|ZNF808;ENSG00000198482|ENST00000359798|ZNF808	nc|ENSG00000198482|Q8N4W9-2|ZNF808	nc|ENSG00000198482|Q8N4W9-2|ZNF808	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7960205078125	2	498.796135	995.577717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.64	1	13.64	13.14	14.14	0								0	0	0	0.37078	1	485	485		5.2307	0	1				21833	8078	12109	12110	28037	28037					0.07975128076600413
LARINFRFDR	10	Unmodified	_LARINFRFDR_					0	0	0			REV__nc|ENSG00000146926|Q8WXI3-2|ASB10	REV__nc|ENSG00000146926|Q8WXI3-2|ASB10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2735595703125	3	436.582556	1306.72584	-0.54675	-0.0002387	-0.19503	-8.5149E-05	-0.74178	-0.00032385	436.58243965875624	34.42	0.22294	34.42	34.277	34.5	0					11	7	2	0	0	0	0.3179	1	6748	6748		5.7834	3.3486	1	49959	+		21834	16364	12110	12111	28038	28038					0.08474394539780405
LARINFRFDR	10	Unmodified	_LARINFRFDR_					0	0	0			REV__nc|ENSG00000146926|Q8WXI3-2|ASB10	REV__nc|ENSG00000146926|Q8WXI3-2|ASB10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2735595703125	3	436.582556	1306.72584	-0.39237	-0.0001713	-0.56311	-0.00024584	-0.95548	-0.00041715	436.58248255004804	34.272	0.23126	34.338	34.203	34.435	0.06636					10	7	2	0	0	0	0.3179	1	6718	6718		3.3196	2.6928	1	63635	+		21835	16364	12110	12111	28039	28039					0.08474394539780405
LARIVTVL	8	Unmodified	_LARIVTVL_					0	0	0			REV__ENST00000536078.1_1_4:2906572-2906674:+|nuORF	REV__ENST00000536078.1_1_4:2906572-2906674:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.8000183105469	2	442.80002	883.585488	0.27886	0.00012348	-0.11904	-5.2711E-05	0.15982	7.0767E-05	442.79987564364427	52.661	0.87619	52.661	52.382	53.259	0					64	31	4	0	0	0	0.071344	1	12394	12394		68.081	0	1	2138700	+		21836	22077	12111	12112	28040	28040					0.13903842553509094
LARIVTVL	8	Unmodified	_LARIVTVL_					0	0	0			REV__ENST00000536078.1_1_4:2906572-2906674:+|nuORF	REV__ENST00000536078.1_1_4:2906572-2906674:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.80010986328125	2	442.80002	883.585488	0.29177	0.0001292	-0.080318	-3.5565E-05	0.21146	9.3633E-05	442.79989440273783	52.603	0.79827	52.654	52.417	53.215	0.050571					59	28	3	0	0	0	0.071344	2	12340	12340;12384		68.081	0	1	2704100	+		21837	22077	12111	12112	28041;28042	28041					0.13903842553509094
LARIVTVL	8	Unmodified	_LARIVTVL_					0	0	0			REV__ENST00000536078.1_1_4:2906572-2906674:+|nuORF	REV__ENST00000536078.1_1_4:2906572-2906674:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7998962402344	2	442.80002	883.585488	0.16209	7.1772E-05	-0.036038	-1.5958E-05	0.12605	5.5815E-05	442.79989238484904	52.695	0.78959	52.695	52.411	53.2	-0.00080872					64	28	3	0	0	0	0.050146	3	12395	12346;12395;12447		78.149	0	1	2493200	+		21838	22077	12111	12112	28043;28044;28045	28044					0.13903842553509094
LARIVTVL	8	Unmodified	_LARIVTVL_					0	0	0			REV__ENST00000536078.1_1_4:2906572-2906674:+|nuORF	REV__ENST00000536078.1_1_4:2906572-2906674:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	442.80002	883.585488	0.27886	0.00012348	-0.11904	-5.2711E-05	0.15982	7.0767E-05	442.79987564364427	52.661	0.87619	52.661	52.382	53.259	0	-0.008803	-3.283E-05	NaN	78.149	64	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2138700	+		21839	22077	12111	12112							0.13903842553509094
LARIVTVL	8	Unmodified	_LARIVTVL_					0	0	0			REV__ENST00000536078.1_1_4:2906572-2906674:+|nuORF	REV__ENST00000536078.1_1_4:2906572-2906674:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	442.80002	883.585488	0.16209	7.1772E-05	-0.036038	-1.5958E-05	0.12605	5.5815E-05	442.79989238484904	52.695	0.78959	52.695	52.411	53.2	-0.00080872	0.024725	4.0677E-05	NaN	78.149	64	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2493200	+		21840	22077	12111	12112							0.13903842553509094
LARKIKTFA	9	Unmodified	_LARKIKTFA_					0	0	0		ENSG00000250366|ENST00000678517|TUNAR	ENSG00000250366|ENST00000678517|TUNAR	ENSG00000250366|ENST00000678517|TUNAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3195190429688	2	524.337301	1046.66005	0.6054	0.00031743	-0.28423	-0.00014903	0.32117	0.0001684	524.3368855444013	43.142	0.76859	43.22	42.968	43.736	0.077518					65	27	4	0	0	0	0.30166	1	9528	9528		8.5933	1.304	1	1061400			21841	8591	12112	12113	28046	28046					0.13858605364907817
LARLKKAIF	9	Unmodified	_LARLKKAIF_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF;ENST00000482945.5_1_15:58889748-58902828:-|nuORF;ENST00000470269.5_1_15:58902390-58913692:-|nuORF;nc|ENSG00000137845|O14672-2|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3536376953125	2	530.355494	1058.69644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.78	1	117.78	117.28	118.28	0								0	0	0	0.2672	1	30447	30447		0.52476	0.52476	1				21842	4088	12113	12114	28047	28047					0.16943482261581266
LARLSLAT	8	Unmodified	_LARLSLAT_					0	0	0		ENSG00000269855|ENST00000601382|RNF225	ENSG00000269855|ENST00000601382|RNF225	ENSG00000269855|ENST00000601382|RNF225	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5751953125	2	422.766178	843.517802	-0.24319	-0.00010281	0.17421	7.3651E-05	-0.068979	-2.9162E-05	422.7662476351841	18.222	0.36802	18.164	18.004	18.372	-0.058174					18	12	2	0	0	0	0.34337	1	1868	1868		5.2307	0	1	45228			21843	8693	12114	12115	28048	28048					0.08978392622714182
LARLSLAT	8	Unmodified	_LARLSLAT_					0	0	0		ENSG00000269855|ENST00000601382|RNF225	ENSG00000269855|ENST00000601382|RNF225	ENSG00000269855|ENST00000601382|RNF225	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	422.766178	843.517802	-0.15778	-6.6703E-05	0.10457	4.421E-05	-0.053204	-2.2493E-05	422.76616225169073	18.109	0.46477	18.109	17.867	18.332	0	-0.005335	-2.5943E-05	NaN	5.2307	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44176			21844	8693	12114	12115							0.08978392622714182
LARLSLAT	8	Unmodified	_LARLSLAT_					0	0	0		ENSG00000269855|ENST00000601382|RNF225	ENSG00000269855|ENST00000601382|RNF225	ENSG00000269855|ENST00000601382|RNF225	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	422.766178	843.517802	-0.22471	-9.4998E-05	0.12172	5.146E-05	-0.10298	-4.3538E-05	422.7662387186798	18.186	0.49125	18.069	17.896	18.387	-0.11739	-0.04497	-1.1443E-05	NaN	5.2307	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31415			21845	8693	12114	12115							0.08978392622714182
LARPALLLL	9	Unmodified	_LARPALLLL_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.33770751953125	2	490.33677	978.658987	0.48833	0.00023945	-0.19757	-9.6876E-05	0.29076	0.00014257	490.3371583607938	75.053	2.5259	75.053	74.679	77.204	0					264	91	5	0	0	0	0.062246	5	19283	19186;19283;19332;19387;19436		48.346	2.3249	1	40627000			21846	7440	12115	12116	28049;28050;28051;28052;28053	28050					0.16880390996004735
LARPALLLL	9	Unmodified	_LARPALLLL_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.3377990722656	2	490.33677	978.658987	0.36106	0.00017704	-0.085912	-4.2126E-05	0.27515	0.00013492	490.337302990868	74.977	4.6922	75.03	74.671	79.363	0.052368					322	176	5	0	0	0	0.062246	4	19260	19165;19260;19303;19354		48.346	11.458	1	48233000			21847	7440	12115	12116	28054;28055;28056;28057	28055					0.16880390996004735
LARPALLLL	9	Unmodified	_LARPALLLL_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.33685302734375	2	490.33677	978.658987	0.60521	0.00029676	-0.23835	-0.00011687	0.36686	0.00017988	490.33709103568157	75.086	1.6462	75.055	74.7	76.346	-0.031487					198	60	5	0	0	0	0.062246	4	19336	19193;19336;19385;19431		48.346	11.458	1	35649000			21848	7440	12115	12116	28058;28059;28060;28061	28059					0.16880390996004735
LARPLLRSL	9	Unmodified	_LARPLLRSL_					0	0	0			REV__ENST00000556440.6_2_17:62503037-62503232:+|nuORF	REV__ENST00000556440.6_2_17:62503037-62503232:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.3214111328125	2	519.842751	1037.67095	0.59891	0.00031134	-0.6254	-0.00032511	-0.026482	-1.3766E-05	519.8424098416494	58.199	0.59325	58.182	57.848	58.442	-0.0172					31	21	2	0	0	0	0.25066	1	14115	14115		3.9444	0	1	154500	+		21849	22258	12116	12117	28062	28062					0.15362007739167893
LARPNTLTL	9	Unmodified	_LARPNTLTL_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7687072753906	2	499.803291	997.59203	0.19676	9.8339E-05	0.15282	7.6381E-05	0.34958	0.00017472	499.8033003570326	48.932	0.66692	48.964	48.774	49.441	0.032047					63	23	4	0	0	0	0.19839	1	11202	11202		21.747	1.293	1	1822600			21850	2512	12117	12118	28063	28063					0.09313735714226823
LARPTPAAE	9	Unmodified	_LARPTPAAE_					0	0	0			REV__ENST00000472623.1_1_X:69646726-69652182:+|nuORF	REV__ENST00000472623.1_1_X:69646726-69652182:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7976379394531	2	463.258717	924.50288	-1.5509	-0.00071846	0.03583	1.6598E-05	-1.5151	-0.00070186	463.2585899994168	34.874	0.46954	34.949	34.713	35.182	0.075306					22	16	2	0	0	0	0.23784	1	6931	6931		13.906	0	1	139840	+		21851	21371	12118	12119	28064	28064					0.037609007547075635
LARPVAGAVI	10	Unmodified	_LARPVAGAVI_					0	0	0			REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.80853271484375	2	483.808377	965.6022	0.31682	0.00015328	0.075512	3.6533E-05	0.39233	0.00018981	483.8083759985357	47.379	0.5318	47.431	47.219	47.75	0.052574					47	19	3	0	0	0	0.039295	1	10751	10751		61.357	16.95	1	1411800	+		21852	21675	12119	12120	28065	28065					0.11802343439467222
LARPVAGAVI	10	Unmodified	_LARPVAGAVI_					0	0	0			REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.80853271484375	2	483.808377	965.6022	0.78885	0.00038165	-0.30732	-0.00014869	0.48152	0.00023296	483.80816835959985	47.395	0.53162	47.45	47.225	47.757	0.054371					51	19	3	0	0	0	0.039295	1	10748	10748		61.357	16.95	1	1579100	+		21853	21675	12119	12120	28066	28066					0.11802343439467222
LARPVAGAVI	10	Unmodified	_LARPVAGAVI_					0	0	0			REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	483.808377	965.6022	0.48128	0.00023285	0.082542	3.9934E-05	0.56382	0.00027278	483.80834610607457	47.412	0.55777	47.412	47.214	47.771	0	-0.01937	8.9427E-05	NaN	61.357	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1239300	+		21854	21675	12119	12120							0.11802343439467222
LARPVAGAVI	10	Unmodified	_LARPVAGAVI_					0	0	0			REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	483.808377	965.6022	0.31682	0.00015328	0.075512	3.6533E-05	0.39233	0.00018981	483.8083759985357	47.379	0.5318	47.431	47.219	47.75	0.052574	0.00050532	8.2625E-05	NaN	61.357	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1411800	+		21855	21675	12119	12120							0.11802343439467222
LARPVAGAVI	10	Unmodified	_LARPVAGAVI_					0	0	0			REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	REV__ENST00000496704.1_1_2:130899553-130900555:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	483.808377	965.6022	0.78885	0.00038165	-0.30732	-0.00014869	0.48152	0.00023296	483.80816835959985	47.395	0.53162	47.45	47.225	47.757	0.054371	0.018865	-0.00028781	NaN	61.357	51	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1579100	+		21856	21675	12119	12120							0.11802343439467222
LARRCFIT	8	Unmodified	_LARRCFIT_					0	0	0			REV__ENST00000595269.5_1_10:67449289-67496676:+|nuORF	REV__ENST00000595269.5_1_10:67449289-67496676:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.797119140625	2	490.278929	978.543305	0.53758	0.00026357	-0.33452	-0.00016401	0.20306	9.9556E-05	490.2786462260707	84.526	0.53366	84.513	84.328	84.862	-0.01284					29	20	2	0	0	0	0.34185	1	22172	22172		2.5775	0	1	224610	+		21857	22592	12120	12121	28067	28067					0.05317543873491104
LARREEANHI	10	Unmodified	_LARREEANHI_					0	0	0			REV__ENST00000555997.1_1_14:69256252-69257717:-|nuORF	REV__ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.55450439453125	3	403.554666	1207.64217	-0.41723	-0.00016837	0.22952	9.2625E-05	-0.1877	-7.5749E-05	403.5547591308342	13.855	0.45311	13.855	13.66	14.113	0					37	15	3	0	0	0	0.3179	1	547	547		8.9762	1.3673	1	283600	+		21858	18394	12121	12122	28068	28068					0.046652383720811486
LARRLEAPS	9	Unmodified	_LARRLEAPS_					0	0	0		nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9;ENST00000552420.5_1_12:57870791-57873587:-|nuORF	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.8119812011719	2	506.79854	1011.58253	0.75926	0.00038479	3.2589	0.0016516	4.0181	0.0020364	507.3030589576995	46.944	0.29044	46.998	46.851	47.142	0.054375					22	9	3	0	0	0	0.16283	1	10639	10639		29.082	8.628	1	436660			21859	3096	12122	12123	28069	28069					0.0771996742871579
LARRQQLV	8	Unmodified	_LARRQQLV_					0	0	0			REV__ENSG00000166813|ENST00000394412|KIF7	REV__ENSG00000166813|ENST00000394412|KIF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.3089599609375	2	492.309075	982.603597	0.090154	4.4384E-05	0.028779	1.4168E-05	0.11893	5.8552E-05	492.3090256815072	25.706	0.56838	25.667	25.442	26.01	-0.038671					36	19	3	0	0	0	0.42446	2	4127	4127;4192		14.582	14.582	1	259070	+		21860	17341	12123	12124	28070;28071	28070					0.11159977528234322
LARRQQLV	8	Unmodified	_LARRQQLV_					0	0	0			REV__ENSG00000166813|ENST00000394412|KIF7	REV__ENSG00000166813|ENST00000394412|KIF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.30908203125	2	492.309075	982.603597	0.12879	6.3405E-05	0.10274	5.0579E-05	0.23153	0.00011398	492.30891568864394	25.766	0.44525	25.744	25.524	25.97	-0.022236					34	15	3	0	0	0	0.42446	1	4178	4178		14.582	14.582	1	239460	+		21861	17341	12123	12124	28072	28072					0.11159977528234322
LARSTLTLV	9	Unmodified	_LARSTLTLV_					0	0	0		ENST00000591224.1_1_19:46181025-46181577:+|nuORF;nc|ENSG00000010310|P48546-2|GIPR;nc|ENSG00000010310|P48546-3|GIPR;ENSG00000010310|ENST00000590918|GIPR	ENST00000591224.1_1_19:46181025-46181577:+|nuORF	ENST00000591224.1_1_19:46181025-46181577:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.2890930175781	2	487.305667	972.596781	0.95571	0.00046572	-0.84488	-0.00041171	0.11083	5.401E-05	487.30526692214056	56.087	1.1791	56.087	55.564	56.744	0					78	42	3	0	0	0	0.25989	1	13565	13565		14.838	4.0143	1	4386400			21862	421	12124	12125	28073	28073					0.10938619857006415
LARSTLTLV	9	Unmodified	_LARSTLTLV_					0	0	0		ENST00000591224.1_1_19:46181025-46181577:+|nuORF;nc|ENSG00000010310|P48546-2|GIPR;nc|ENSG00000010310|P48546-3|GIPR;ENSG00000010310|ENST00000590918|GIPR	ENST00000591224.1_1_19:46181025-46181577:+|nuORF	ENST00000591224.1_1_19:46181025-46181577:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2891845703125	2	487.305667	972.596781	0.78022	0.00038021	-0.5785	-0.00028191	0.20172	9.83E-05	487.30545056518713	55.998	0.83608	56.069	55.618	56.454	0.070885					66	30	3	0	0	0	0.22188	1	13493	13493		20.454	3.3407	1	4339600			21863	421	12124	12125	28074	28074					0.10938619857006415
LARSTLTLV	9	Unmodified	_LARSTLTLV_					0	0	0		ENST00000591224.1_1_19:46181025-46181577:+|nuORF;nc|ENSG00000010310|P48546-2|GIPR;nc|ENSG00000010310|P48546-3|GIPR;ENSG00000010310|ENST00000590918|GIPR	ENST00000591224.1_1_19:46181025-46181577:+|nuORF	ENST00000591224.1_1_19:46181025-46181577:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2893371582031	2	487.305667	972.596781	0.46163	0.00022495	1.3389	0.00065248	1.8006	0.00087743	487.3061936897112	56.714	0.52144	56.792	56.462	56.983	0.078674					28	19	2	0	0	0	0.25989	1	13542	13542		14.838	1.3304	1	218520			21864	421	12124	12125	28075	28075					0.10938619857006415
LARTKAPT	8	Unmodified	_LARTKAPT_					0	0	0			REV__ENST00000454784.8_2_12:40959567-40961472:+|nuORF	REV__ENST00000454784.8_2_12:40959567-40961472:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.5487365722656	2	429.263802	856.513051	-0.26255	-0.0001127	0.59299	0.00025455	0.33044	0.00014184	429.26404225110844	15.922	0.33014	15.922	15.763	16.093	0					16	11	2	0	0	0	0.34353	1	1203	1203		2.0598	0	1	22894	+		21865	21153	12125	12126	28076	28076					0.07905508479939272
LARTPSFAF	9	Unmodified	_LARTPSFAF_					0	0	0		ENST00000403716.5_1_2:131905685-131905853:+|nuORF	ENST00000403716.5_1_2:131905685-131905853:+|nuORF	ENST00000403716.5_1_2:131905685-131905853:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.746826171875	2	505.276909	1008.53927	0.59772	0.00030202	-0.51005	-0.00025772	0.087676	4.4301E-05	505.27659681045975	58.302	1.0489	58.285	57.953	59.002	-0.0172					66	37	2	0	0	0	0.20651	1	14185	14185		26.884	5.137	1	478830			21866	10208	12126	12127	28077	28077					0.035337776514325014
LARVFGELA	9	Unmodified	_LARVFGELA_					0	0	0		ENST00000531478.5_1_19:1064055-1065421:+|nuORF;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	ENST00000531478.5_1_19:1064055-1065421:+|nuORF	ENST00000531478.5_1_19:1064055-1065421:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2851257324219	2	488.284734	974.554916	0.3787	0.00018491	0.68947	0.00033666	1.0682	0.00052157	488.28523473977	55.592	0.82824	55.592	55.221	56.049	0					94	29	5	0	0	0	0.11461	1	13239	13239		36.127	0	1	6130300			21867	793	12127	12128	28078	28078					0.0666206416847217
LARVRDHYIF	10	Unmodified	_LARVRDHYIF_					0	0	0		ENST00000455605.2_1_6:43488611-43489035:+|nuORF;ENSG00000171453|ENST00000642195|POLR1C	ENST00000455605.2_1_6:43488611-43489035:+|nuORF	ENST00000455605.2_1_6:43488611-43489035:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.9601135253906	3	430.57529	1288.70404	-0.60962	-0.00026249	3.4013	0.0014645	2.7916	0.001202	430.57672857791505	35.235	0.27148	35.311	35.182	35.454	0.075306					19	9	3	0	0	0	0.31538	1	7064	7064		1.5923	0	1	171980			21868	6543	12128	12129	28079	28079					0.07123589791217455
LASAGLYYTG	10	Unmodified	_LASAGLYYTG_					0	0	0		ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7826232910156	2	508.258382	1014.50221	0.45974	0.00023367	0.44168	0.00022449	0.90142	0.00045816	508.2585696697971	53.382	0.76357	53.382	53.121	53.884	0					60	28	3	0	0	0	0.30079	1	12749	12749		20.454	9.6297	1	874440			21869	1731	12129	12130	28080	28080					-0.0044593868499305245
LASAGLYYTG	10	Unmodified	_LASAGLYYTG_					0	0	0		ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7825622558594	2	508.258382	1014.50221	0.28916	0.00014697	0.43641	0.00022181	0.72557	0.00036878	508.2586315698539	53.374	0.6484	53.43	53.221	53.869	0.056259					55	24	3	0	0	0	0.30079	1	12688	12688		20.454	8.8133	1	882390			21870	1731	12129	12130	28081	28081					-0.0044593868499305245
LASALFLFL	9	Unmodified	_LASALFLFL_					0	0	0			REV__ENST00000482563.1_1_20:34293047-34295154:-|nuORF	REV__ENST00000482563.1_1_20:34293047-34295154:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.2447814941406	2	497.802229	993.589904	0.027559	1.3719E-05	-2.5494	-0.0012691	-2.5218	-0.0012554	497.800189640743	25.531	0.30655	25.5	25.319	25.626	-0.031408					29	10	4	0	0	0	0.23783	1	4099	4099		18.135	5.6034	1	93444	+		21871	21503	12130	12131	28082	28082					0.09285306976403263
LASDRYGLLAF	11	Unmodified	_LASDRYGLLAF_					0	0	0		ENSG00000105509|ENST00000540069|HAS1;nc|ENSG00000105509|Q92839|HAS1	ENSG00000105509|ENST00000540069|HAS1	ENSG00000105509|ENST00000540069|HAS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.7506713867188	2	613.332413	1224.65027	0.24129	0.00014799	-1.0693	-0.00065584	-0.82802	-0.00050785	613.3314956142178	67.466	0.36805	67.466	67.193	67.561	0					16	12	2	0	0	0	0.32697	1	16894	16894		13.615	2.7909	1	102480			21872	1989	12131	12132	28083	28083					0.04693372568840459
LASDRYGLLAF	11	Unmodified	_LASDRYGLLAF_					0	0	0		ENSG00000105509|ENST00000540069|HAS1;nc|ENSG00000105509|Q92839|HAS1	ENSG00000105509|ENST00000540069|HAS1	ENSG00000105509|ENST00000540069|HAS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	613.332413	1224.65027	0.19872	0.00012188	0.63441	0.0003891	0.83313	0.00051099	613.8344780428567	67.283	0.53397	67.361	67.012	67.546	0.078041	-0.052564	0.00088474	NaN	13.615	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93009			21873	1989	12131	12132							0.04693372568840459
LASFSKVDI	9	Unmodified	_LASFSKVDI_					0	0	0		ENSG00000103540|ENST00000694978|CCP110;nc|ENSG00000103540|O43303|CCP110	ENSG00000103540|ENST00000694978|CCP110	ENSG00000103540|ENST00000694978|CCP110	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7979431152344	2	490.276575	978.538597	0.33574	0.0001646	-0.44363	-0.0002175	-0.10789	-5.2897E-05	490.2762760216416	44.251	0.46188	44.326	44.04	44.502	0.07505					26	16	2	0	0	0	0.18479	1	9836	9836		34.932	12.196	1	334890			21874	1841	12132	12133	28084	28084					0.04846938211710494
LASGGRRF	8	Unmodified	_LASGGRRF_					0	0	0		nc|ENSG00000064692|Q9Y6H5-5|SNCAIP;ENST00000512146.6_1_5:121736783-121799188:+|nuORF;nc|ENSG00000064692|Q9Y6H5-2|SNCAIP;nc|ENSG00000064692|Q9Y6H5-4|SNCAIP;ENSG00000064692|ENST00000261368|SNCAIP;nc|ENSG00000064692|Q9Y6H5-3|SNCAIP	nc|ENSG00000064692|Q9Y6H5-5|SNCAIP	nc|ENSG00000064692|Q9Y6H5-5|SNCAIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.88568115234375	2	432.245944	862.477334	0.25373	0.00010967	-1.0207	-0.00044119	-0.76698	-0.00033152	432.2454158805145	20.36	0.85282	20.307	19.956	20.809	-0.052912					51	30	3	0	0	0	0.31934	1	2511	2511		18.135	0	1	325290			21875	794	12133	12134	28085	28085					0.040594710229470365
LASKFPTTK	9	Unmodified	_LASKFPTTK_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000497964.1_1_1:39924789-39929409:+|nuORF;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7638854980469	2	496.792392	991.570232	0.52544	0.00026103	-0.17878	-8.8818E-05	0.34665	0.00017222	496.7921833260655	49.151	0.57602	49.151	48.912	49.488	0					33	20	2	0	0	0	0.23235	1	11313	11313		21.537	0	1	520050			21876	3332;12691	12134	12135	28086	28086					0.0741093096565919
LASKFSFNF	9	Unmodified	_LASKFSFNF_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2;REV__nc|ENSG00000187627|P0DJD0|RGPD1	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7607421875	2	530.776742	1059.53893	0.45426	0.00024111	1.2579	0.00066765	1.7121	0.00090876	530.7777399791605	37.766	0.23933	37.863	37.768	38.007	0.097527					12	8	2	0	0	0	0.2719	1	7802	7802		13.042	2.2185	1	86668	+		21877	16613;18371	12135	12136	28087	28087					0.011543579315684838
LASKLRSLA	9	Unmodified	_LASKLRSLA_					0	0	0		ENST00000529783.1_1_2:74375310-74375499:+|nuORF	ENST00000529783.1_1_2:74375310-74375499:+|nuORF	ENST00000529783.1_1_2:74375310-74375499:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.8053283691406	2	479.805834	957.597115	0.0097872	4.6959E-06	-0.24132	-0.00011579	-0.23153	-0.00011109	479.8056769916417	18.225	0.36109	18.167	17.98	18.341	-0.058174					23	12	2	0	0	0	0.29638	1	1844	1844		9.3831	9.3831	1	94461			21878	11606	12136	12137	28088	28088					0.1166203957683365
LASLPLLYR	9	Unmodified	_LASLPLLYR_					0	0	0			REV__ENST00000589305.5_1_19:55562362-55574430:-|nuORF	REV__ENST00000589305.5_1_19:55562362-55574430:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7958984375	2	523.32386	1044.63317	0.67823	0.00035493	-3.8515	-0.0020156	-3.1733	-0.0016607	523.3216454020849	29.4	0.30683	29.4	29.244	29.551	0					18	10	2	0	0	0	0.2322	1	5240	5240		20.454	1.1966	1	101850	+		21879	16902	12137	12138	28089	28089					0.1126349675369056
LASLQILAY	9	Unmodified	_LASLQILAY_					0	0	0		ENST00000502256.1_1_4:2743986-2746461:-|nuORF	ENST00000502256.1_1_4:2743986-2746461:-|nuORF	ENST00000502256.1_1_4:2743986-2746461:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3039855957031	2	496.294768	990.574983	0.42606	0.00021145	-0.73391	-0.00036424	-0.30785	-0.00015279	496.2945386003725	72.795	0.38413	72.849	72.681	73.065	0.053833					20	13	2	0	0	0	0.25346	1	18518	18518		10.8	2.2062	1	56565			21880	11271	12138	12139	28090	28090					0.0793181510841805
LASLQILAY	9	Unmodified	_LASLQILAY_					0	0	0		ENST00000502256.1_1_4:2743986-2746461:-|nuORF	ENST00000502256.1_1_4:2743986-2746461:-|nuORF	ENST00000502256.1_1_4:2743986-2746461:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3038635253906	2	496.294768	990.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.88	1	72.85	72.35	73.35	-0.029305								0	0	0	0.20651	1	18585	18585		20.415	0.97554	1				21881	11271	12138	12139	28091	28091					0.0793181510841805
LASLQILAY	9	Unmodified	_LASLQILAY_					0	0	0		ENST00000502256.1_1_4:2743986-2746461:-|nuORF	ENST00000502256.1_1_4:2743986-2746461:-|nuORF	ENST00000502256.1_1_4:2743986-2746461:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3041687011719	2	496.294768	990.574983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.037	1	73.007	72.507	73.507	-0.029305								0	0	0	0.21673	1	18633	18633		17.113	2.5312	1				21882	11271	12138	12139	28092	28092					0.0793181510841805
LASQLEEIK	9	Unmodified	_LASQLEEIK_					0	0	0		nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1;ENSG00000169641|ENST00000302291|LUZP1	nc|ENSG00000169641|Q86V48-2|LUZP1	nc|ENSG00000169641|Q86V48-2|LUZP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2645263671875	2	515.792589	1029.57063	0.056427	2.9105E-05	0.62594	0.00032286	0.68237	0.00035196	515.7928905026669	16.821	0.98663	16.706	16.275	17.262	-0.11434					34	23	2	0	0	0	0.25527	1	1444	1444		8.7454	0	1	109580			21883	6373	12139	12140	28093	28093					0.057023058948516336
LASRIVLSL	9	Unmodified	_LASRIVLSL_					0	0	0		ENST00000541682.6_1_17:8024336-8024711:-|nuORF	ENST00000541682.6_1_17:8024336-8024711:-|nuORF	ENST00000541682.6_1_17:8024336-8024711:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80029296875	2	486.316035	970.617516	0.13214	6.4261E-05	0.4279	0.0002081	0.56004	0.00027236	486.3162774422188	66.857	0.82437	66.843	66.572	67.396	-0.013588					38	28	2	0	0	0	0.24993	1	16805	16805		5.2969	0	1	149360			21884	11732	12140	12141	28094	28094					0.13103210236658924
LASRPLLLA	9	Unmodified	_LASRPLLLA_					0	0	0		ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.3106384277344	2	477.310752	952.606951	0.318	0.00015179	-0.3387	-0.00016166	-0.020697	-9.8791E-06	477.31045447905404	62.548	1.4168	62.645	61.924	63.341	0.096989					94	51	3	0	0	0	0.13748	1	15410	15410		32.786	1.5173	1	799070			21885	3764	12141	12142	28095	28095					0.12875227582230764
LASSFQGSF	9	Unmodified	_LASSFQGSF_					0	0	0			REV__ENST00000492633.5_1_1:60370173-60378128:-|nuORF	REV__ENST00000492633.5_1_1:60370173-60378128:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.79248046875	2	472.229625	942.444697	-0.2998	-0.00014157	0.021053	9.9417E-06	-0.27874	-0.00013163	472.22962726746533	34.268	0.44761	34.335	34.12	34.567	0.06636					23	15	2	0	0	0	0.25417	1	6676	6676		8.5933	0	1	103250	+		21886	21625	12142	12143	28096	28096					-0.02882780890547565
LASSFQGSF	9	Unmodified	_LASSFQGSF_					0	0	0			REV__ENST00000492633.5_1_1:60370173-60378128:-|nuORF	REV__ENST00000492633.5_1_1:60370173-60378128:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.79248046875	2	472.229625	942.444697	-0.022757	-1.0747E-05	-0.25348	-0.0001197	-0.27623	-0.00013045	472.22934005452436	34.291	0.45105	34.358	34.099	34.55	0.066704					22	15	2	0	0	0	0.24739	1	6671	6671		13.508	0	1	105750	+		21887	21625	12142	12143	28097	28097					-0.02882780890547565
LASSSGRW	8	Unmodified	_LASSSGRW_					0	0	0		ENST00000397497.8_2_8:27288464-27288860:+|nuORF	ENST00000397497.8_2_8:27288464-27288860:+|nuORF	ENST00000397497.8_2_8:27288464-27288860:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.8854675292969	2	432.222134	862.429715	0.21143	9.1383E-05	0.65008	0.00028098	0.86151	0.00037236	432.2223199736911	20.561	0.65574	20.451	20.238	20.894	-0.11003					40	23	2	0	0	0	0.34218	1	2535	2535		9.3474	0	1	290910			21888	10139	12143	12144	28098	28098					-0.007002279678999912
LASSWEVSP	9	Unmodified	_LASSWEVSP_					0	0	0			REV__ENST00000468090.5_1_21:45181890-45182109:+|nuORF	REV__ENST00000468090.5_1_21:45181890-45182109:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7823791503906	2	488.242732	974.470912	0.3924	0.00019159	-0.46413	-0.00022661	-0.07173	-3.5022E-05	488.242366358461	32.685	0.61254	32.74	32.478	33.091	0.055309					30	21	2	0	0	0	0.23783	1	6362	6362		12.532	0	1	239540	+		21889	21316	12144	12145	28099	28099					-0.01734511719087095
LASTSKALG	9	Unmodified	_LASTSKALG_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.9210510253906	2	424.247818	846.481082	-0.37433	-0.00015881	0.33199	0.00014085	-0.042338	-1.7962E-05	424.2479587730594	18.664	0.55629	18.606	18.458	19.014	-0.058172					37	19	2	0	0	0	0.20167	1	2010	2010		29.082	29.082	1	145190			21890	6950	12145	12146	28100	28100					0.05170096006145286
LASTSKALG	9	Unmodified	_LASTSKALG_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	424.247818	846.481082	-0.2212	-9.3846E-05	0.34753	0.00014744	0.12632	5.3592E-05	424.2480557287425	18.58	0.53242	18.58	18.391	18.923	0	-0.0034766	-4.0804E-06	NaN	29.082	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118480			21891	6950	12145	12146							0.05170096006145286
LASTSKALG	9	Unmodified	_LASTSKALG_					0	0	0		ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	ENSG00000176920|ENST00000425340|FUT2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	424.247818	846.481082	-0.27876	-0.00011826	0.40058	0.00016994	0.12182	5.1682E-05	424.24801386282826	18.681	0.53019	18.564	18.387	18.918	-0.11739	-0.019045	4.0931E-05	NaN	29.082	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101020			21892	6950	12145	12146							0.05170096006145286
LASTSLRLI	9	Unmodified	_LASTSLRLI_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.289306640625	2	487.305667	972.596781	0.95571	0.00046572	-0.84488	-0.00041171	0.11083	5.401E-05	487.30526692214056	56.087	1.1791	56.087	55.564	56.744	0					78	42	3	0	0	0	0.28128	1	13612	13612		11.64	2.8949	1	4386400	+		21893	16073	12146	12147	28101	28101					0.10938619856995047
LASVFRWN	8	Unmodified	_LASVFRWN_					0	0	0		ENST00000529477.5_1_1:32385166-32403656:-|nuORF	ENST00000529477.5_1_1:32385166-32403656:-|nuORF	ENST00000529477.5_1_1:32385166-32403656:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.283203125	2	496.769252	991.52395	0.99069	0.00049214	-0.18385	-9.133E-05	0.80684	0.00040081	496.7689234438486	47.082	0.24639	47.136	47.037	47.284	0.054371					13	8	2	0	0	0	0.29855	1	10680	10680		24.674	4.2203	1	136920			21894	11601	12147	12148	28102	28102					0.027849108542341128
LATASELPLL	10	Unmodified	_LATASELPLL_					0	0	0			REV__ENSG00000198569|ENST00000673835|SLC34A3	REV__ENSG00000198569|ENST00000673835|SLC34A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.780029296875	2	514.305332	1026.59611	0.083862	4.3131E-05	1.2169	0.00062588	1.3008	0.00066901	514.3057686478408	40.748	0.50314	40.847	40.592	41.095	0.099407					28	18	2	0	0	0	0.30079	1	8694	8694		14.838	0	1	369580	+		21895	18834	12148	12149	28103	28103					0.08387780417297108
LATGYHFLL	9	Unmodified	_LATGYHFLL_					0	0	0		ENST00000553902.5_1_14:23375339-23380574:-|nuORF;ENST00000556687.5_1_14:23375339-23380602:-|nuORF;ENST00000554955.5_1_14:23375339-23380602:-|nuORF	ENST00000553902.5_1_14:23375339-23380574:-|nuORF	ENST00000553902.5_1_14:23375339-23380574:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.797607421875	2	517.78711	1033.55967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.156	1	57.137	56.637	57.637	-0.019081								0	0	0	0.19325	1	13768	13768		24.674	2.9272	1				21896	11826	12149	12150	28104	28104					0.04422948311230357
LATKPSESL	9	Unmodified	_LATKPSESL_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7;REV__ENST00000474125.6_1_10:102771704-102781716:-|nuORF	REV__ENST00000474125.6_1_10:102771704-102781716:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7559814453125	2	473.266207	944.517862	0.075859	3.5901E-05	-2.6153	-0.0012377	-2.5394	-0.0012018	473.2661271281632	30.967	0.47327	30.995	30.721	31.194	0.027946					33	16	3	0	0	0	0.2451	1	5694	5694		15.847	0	1	110020	+		21897	18474;21389	12150	12151	28105	28105					0.04338347832049294
LATQRQVLLKE	11	Unmodified	_LATQRQVLLKE_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.59979248046875	3	433.597871	1297.77178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.618	1	41.708	41.208	42.208	0.090252								0	0	0	0.33831	1	8988	8988		5.8681	0	1		+		21898	17286	12151	12152	28106	28106					0.13480994931364876
LAVDVGETGP	10	Unmodified	_LAVDVGETGP_					0	0	0		nc|ENSG00000160058|Q9NW68-9|BSDC1;nc|ENSG00000160058|Q9NW68-4|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	nc|ENSG00000160058|Q9NW68-9|BSDC1	nc|ENSG00000160058|Q9NW68-9|BSDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7796630859375	2	479.248015	956.481476	0.21252	0.00010185	-1.3134	-0.00062946	-1.1009	-0.00052761	479.2475881743723	42.441	0.30561	42.532	42.385	42.691	0.091362					14	10	2	0	0	0	0.28434	1	9256	9256		19.257	5.7491	1	148590			21899	5433	12152	12153	28107	28107					0.001494709353437429
LAVERLLEPLV	11	Unmodified	_LAVERLLEPLV_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.3900146484375	2	626.387188	1250.75982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.02	1	103.03	102.53	103.53	0.0082703								0	0	0	0.37382	1	27391	27391		2.9952	0	1				21900	620	12153	12154	28108	28108					0.14447378188197035
LAVGALLTL	9	Unmodified	_LAVGALLTL_					0	0	0			REV__ENSG00000124134|ENST00000537075|KCNS1	REV__ENSG00000124134|ENST00000537075|KCNS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.7500915527344	2	435.786579	869.558604	0.11344	4.9437E-05	-0.036431	-1.5876E-05	0.077013	3.3561E-05	435.7864332647648	54.052	0.68703	54.036	53.764	54.451	-0.015923					58	24	3	0	0	0	0.062269	1	12809	12809		63.563	0	1	843570	+		21901	15209	12154	12155	28109	28109					0.11860733942330626
LAVKHYAK	8	Unmodified	_LAVKHYAK_					0	0	0			REV__ENSG00000172404|ENST00000307221|DNAJB7	REV__ENSG00000172404|ENST00000307221|DNAJB7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7536926269531	2	465.281995	928.549437	-0.10551	-4.909E-05	0.49131	0.0002286	0.3858	0.00017951	465.282024766243	22.152	0.3119	22.152	21.94	22.252	0					15	10	2	0	0	0	0.34092	1	3066	3066		13.508	2.684	1	35596	+		21902	17711	12155	12156	28110	28110					0.08230385376657523
LAVKHYAK	8	Unmodified	_LAVKHYAK_					0	0	0			REV__ENSG00000172404|ENST00000307221|DNAJB7	REV__ENSG00000172404|ENST00000307221|DNAJB7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.75384521484375	2	465.281995	928.549437	-0.051004	-2.3731E-05	0.11079	5.155E-05	0.059789	2.7819E-05	465.2819101504694	22.272	0.39603	22.172	21.943	22.34	-0.10034					21	14	2	0	0	0	0.34131	1	3040	3040		12.532	2.4576	1	47380	+		21903	17711	12155	12156	28111	28111					0.08230385376657523
LAVLAKYSL	9	Unmodified	_LAVLAKYSL_					0	0	0			REV__nc|ENSG00000185379|O75771-4|RAD51D	REV__nc|ENSG00000185379|O75771-4|RAD51D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.82122802734375	2	489.305136	976.595718	0.38139	0.00018661	-0.88479	-0.00043293	-0.5034	-0.00024632	489.30467136904525	49.81	0.50448	49.83	49.591	50.095	0.020695					27	18	2	0	0	0	0.21905	1	11567	11567		16.942	0	1	116900	+		21904	18376	12156	12157	28112	28112					0.10648405488097978
LAVNRQAL	8	Unmodified	_LAVNRQAL_					0	0	0			REV__ENSG00000074356|ENST00000389005|NCBP3	REV__ENSG00000074356|ENST00000389005|NCBP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7691955566406	2	442.769252	883.52395	-0.10904	-4.828E-05	0.43013	0.00019045	0.32109	0.00014217	442.769335278695	14.266	0.8098	14.2	13.889	14.699	-0.066068					66	28	4	0	0	0	0.35375	1	706	706		24.674	4.2203	1	634440	+		21905	13787	12157	12158	28113	28113					0.07752910854230777
LAVQAPHDF	9	Unmodified	_LAVQAPHDF_					0	0	0			REV__ENSG00000007174|ENST00000262442|DNAH9	REV__ENSG00000007174|ENST00000262442|DNAH9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2898254394531	2	499.258717	996.50288	0.67307	0.00033604	0.63651	0.00031778	1.3096	0.00065382	499.259041350656	47.241	0.58812	47.241	46.961	47.549	0					47	20	3	0	0	0	0.24311	1	10760	10760		11.64	11.64	1	828670	+		21906	13381	12158	12159	28114	28114					0.0044890075471357704
LAVQAPHDF	9	Unmodified	_LAVQAPHDF_					0	0	0			REV__ENSG00000007174|ENST00000262442|DNAH9	REV__ENSG00000007174|ENST00000262442|DNAH9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	499.258717	996.50288	0.95332	0.00047596	0.28699	0.00014328	1.2403	0.00061924	499.2587725615133	47.066	0.47289	47.121	46.939	47.412	0.054371	-0.021996	-0.00038617	NaN	11.64	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	926370	+		21907	13381	12158	12159							0.0044890075471357704
LAVREPLLS	9	Unmodified	_LAVREPLLS_					0	0	0		ENST00000273308.8_2_12:56709793-56710018:-|nuORF	ENST00000273308.8_2_12:56709793-56710018:-|nuORF	ENST00000273308.8_2_12:56709793-56710018:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2958984375	2	499.305667	996.596781	0.65985	0.00032947	-0.77372	-0.00038632	-0.11386	-5.6852E-05	499.3057421309981	47.286	0.58812	47.286	46.961	47.549	0					49	20	4	0	0	0	0.193	1	10730	10730		24.674	0.65332	1	1175100			21908	9095	12159	12160	28115	28115					0.09834619856997051
LAVSGRRP	8	Unmodified	_LAVSGRRP_					0	0	0			REV__nc|ENSG00000103044|O00219-2|HAS3	REV__nc|ENSG00000103044|O00219-2|HAS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.2615051269531	2	428.261594	854.508634	-0.093055	-3.9852E-05	-0.71231	-0.00030506	-0.80537	-0.00034491	428.2615507169743	80.529	2.0429	80.529	79.981	82.024	0					263	86	5	0	0	0	0.4397	2	20972	20972;21015		9.3474	0	1	13058000	+		21909	14350	12160	12161	28116;28117	28116					0.0755604405703707
LAVSGRRP	8	Unmodified	_LAVSGRRP_					0	0	0			REV__nc|ENSG00000103044|O00219-2|HAS3	REV__nc|ENSG00000103044|O00219-2|HAS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2615051269531	2	428.261594	854.508634	-0.20979	-8.9845E-05	0.16087	6.8896E-05	-0.048916	-2.0949E-05	428.2616366316765	80.491	1.9251	80.556	80.157	82.082	0.065094					155	85	2	0	0	0	0.4397	1	20932	20932		9.3474	0	1	14228000	+		21910	14350	12160	12161	28118	28118					0.0755604405703707
LAVSGRRP	8	Unmodified	_LAVSGRRP_					0	0	0			REV__nc|ENSG00000103044|O00219-2|HAS3	REV__nc|ENSG00000103044|O00219-2|HAS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2614440917969	2	428.261594	854.508634	-0.044126	-1.8897E-05	-0.2452	-0.00010501	-0.28933	-0.00012391	428.26149196599977	80.59	2.1301	80.563	80.06	82.19	-0.026825					150	85	2	0	0	0	0.4397	1	20960	20960		9.3474	0	1	14387000	+		21911	14350	12160	12161	28119	28119					0.0755604405703707
LAVSHVIHKAV	11	Unmodified	_LAVSHVIHKAV_					0	0	0		CON__A2I7N3	CON__A2I7N3	CON__A2I7N3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.858154296875	2	587.358765	1172.70298	0.01272	7.4713E-06	0.477	0.00028017	0.48972	0.00028764	587.3605780108156	34.187	0.74547	34.253	33.93	34.676	0.06636					56	26	3	0	0	0	0.46655	1	6737	6737		2.4985	0.43874	1	146800		+	21912	199	12161	12162	28120	28120					0.12353375422321733
LAVSLAANALF	11	Unmodified	_LAVSLAANALF_					0	0	0		ENSG00000188807|ENST00000340381|TMEM201;ENST00000508400.1_1_1:9671124-9673138:+|nuORF	ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3175659179688	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.88	1	118.86	118.36	119.36	-0.024147								0	0	0	0.37252	1	30712	30712		3.2813	0.39209	1				21913	7776	12162	12163	28121	28121					0.08222889028456848
LAVSRAIAI	9	Unmodified	_LAVSRAIAI_					0	0	0		ENST00000484588.1_1_22:22279345-22285612:-|nuORF	ENST00000484588.1_1_22:22279345-22285612:-|nuORF	ENST00000484588.1_1_22:22279345-22285612:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.29510498046875	2	457.295102	912.575651	0.034123	1.5604E-05	-0.70117	-0.00032064	-0.66705	-0.00030504	457.2951027161086	61.971	1.6803	61.971	61.437	63.117	0					201	62	5	0	0	0	0.051692	1	15325	15325		52.268	3.9225	1	9957200			21914	11076	12163	12164	28122	28122					0.11586654548113984
LAVSRAIAI	9	Unmodified	_LAVSRAIAI_					0	0	0		ENST00000484588.1_1_22:22279345-22285612:-|nuORF	ENST00000484588.1_1_22:22279345-22285612:-|nuORF	ENST00000484588.1_1_22:22279345-22285612:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.29510498046875	2	457.295102	912.575651	-0.22953	-0.00010496	-0.41252	-0.00018864	-0.64205	-0.00029361	457.29522534095975	61.846	1.7385	61.943	61.385	63.123	0.096985					175	63	4	0	0	0	0.051692	1	15292	15292		52.268	2.3353	1	9843000			21915	11076	12163	12164	28123	28123					0.11586654548113984
LAVVPTVQK	9	Unmodified	_LAVVPTVQK_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.8029479980469	2	477.80276	953.590967	0.34983	0.00016715	0.68398	0.00032681	1.0338	0.00049395	477.8028149876123	42.091	1.0448	42.176	41.906	42.951	0.085197					97	37	4	0	0	0	0.10197	1	9174	9174		37.974	1.847	1	1685400	+		21916	14858	12164	12165	28124	28124					0.11231521345325746
LAWEASPHYPT	11	Unmodified	_LAWEASPHYPT_					0	0	0		ENSG00000271503|ENST00000651122|CCL5	ENSG00000271503|ENST00000651122|CCL5	ENSG00000271503|ENST00000651122|CCL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.5749206542969	3	424.540022	1270.59824	-0.37002	-0.00015709	-1.8183	-0.00077194	-2.1883	-0.00092903	424.53888567600194	25.494	0.40171	25.438	25.219	25.62	-0.055931					21	13	2	0	0	0	0.33238	1	4055	4055		1.3296	0	1	72859			21917	8697	12165	12166	28125	28125					-0.02623790844904761
LAWFGDSLT	9	Unmodified	_LAWFGDSLT_					0	0	0		nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000469445.1_1_2:27262901-27263090:+|nuORF	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.263671875	2	505.2531	1008.49165	0.38398	0.00019401	0.43628	0.00022043	0.82027	0.00041444	505.2533303318238	76.296	1.1096	76.265	75.881	76.991	-0.031487					115	40	4	0	0	0	0.20344	1	19799	19799		23.148	5.0134	1	2936300			21918	2906	12166	12167	28126	28126					-0.01225921339425895
LAWVGLSK	8	Unmodified	_LAWVGLSK_					0	0	0			REV__ENST00000591991.1_1_19:5666960-5667302:+|nuORF	REV__ENST00000591991.1_1_19:5666960-5667302:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2737731933594	2	437.263271	872.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.436	1	41.436	40.936	41.936	0								0	0	0	0.17733	1	8929	8929		47.749	3.8904	1		+		21919	22570	12167	12168	28127	28127					0.0706329411104889
LAWVIEALRLP	11	Unmodified	_LAWVIEALRLP_					0	0	0		nc|ENSG00000178809|Q86UV6-2|TRIM74;ENSG00000178809|ENST00000323819|TRIM73;ENSG00000155428|ENST00000285805|TRIM74	nc|ENSG00000178809|Q86UV6-2|TRIM74	nc|ENSG00000178809|Q86UV6-2|TRIM74	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.889892578125	2	640.889898	1279.76524	0.42081	0.0002697	-0.23574	-0.00015108	0.18508	0.00011861	640.889615570614	74.055	0.72828	74.107	73.825	74.554	0.052361					54	24	3	0	0	0	0.39234	1	18925	18925		12.241	0	1	1976500			21920	5175	12168	12169	28128	28128					0.13655101770632427
LAYIMNYI	8	Oxidation (M)	_LAYIM(Oxidation (M))NYI_		LAYIM(1)NYI		LAYIM(130)NYI	0	0	1		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.75982666015625	2	508.759704	1015.50485	0.3477	0.00017689	-0.27447	-0.00013964	0.073224	3.7253E-05	508.7596200464913	68.424	0.56878	68.424	68.074	68.643	0					37	15	3	0	0	0	0.004968	1	17234	17234		127.54	56.672	1	876170			21921	2197	12169	12170	28129	28129		270			-0.0022780655170890896
LAYIMNYI	8	Oxidation (M)	_LAYIM(Oxidation (M))NYI_		LAYIM(1)NYI		LAYIM(130)NYI	0	0	1		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.75982666015625	2	508.759704	1015.50485	0.1962	9.9818E-05	-0.32227	-0.00016396	-0.12607	-6.4141E-05	508.7596324554447	68.406	0.57149	68.477	68.078	68.649	0.071938					41	16	3	0	0	0	0.004968	1	17210	17210		127.54	56.672	1	1051900			21922	2197	12169	12170	28130	28130		270			-0.0022780655170890896
LAYIMNYI	8	Oxidation (M)	_LAYIM(Oxidation (M))NYI_		LAYIM(1)NYI		LAYIM(110)NYI	0	0	1		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.75982666015625	2	508.759704	1015.50485	0.34432	0.00017517	-0.43012	-0.00021883	-0.085808	-4.3655E-05	508.75955686374954	68.504	0.45505	68.485	68.197	68.652	-0.019157					37	15	3	0	0	0	0.012657	1	17233	17233		112.56	52.763	1	788720			21923	2197	12169	12170	28131	28131		270			-0.0022780655170890896
LAYKDKQRR	9	Unmodified	_LAYKDKQRR_					0	0	0			REV__ENST00000507916.6_1_4:90640987-90641107:+|nuORF	REV__ENST00000507916.6_1_4:90640987-90641107:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3432006835938	2	589.343646	1176.67274	-0.022249	-1.3112E-05	-0.88665	-0.00052254	-0.90889	-0.00053565	589.3423090162147	104.17	0.08345	104.17	104.16	104.24	0					13	11	2	0	0	0	0.33276	1	27676	27676		3.9444	0.3479	1	116670	+		21924	21764	12170	12171	28132	28132					0.09147016757128767
LAYKDKQRR	9	Unmodified	_LAYKDKQRR_					0	0	0			REV__ENST00000507916.6_1_4:90640987-90641107:+|nuORF	REV__ENST00000507916.6_1_4:90640987-90641107:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3436279296875	2	589.343646	1176.67274	0.31854	0.00018773	-0.21847	-0.00012875	0.10007	5.8975E-05	589.3432787476333	111.78	1.0147	111.79	111.64	112.65	0.0131					170	122	2	0	0	0	0.35563	1	29270	29270		0.52476	0.066424	1	104090	+		21925	21764	12170	12171	28133	28133					0.09147016757128767
LAYKDKQRR	9	Unmodified	_LAYKDKQRR_					0	0	0			REV__ENST00000507916.6_1_4:90640987-90641107:+|nuORF	REV__ENST00000507916.6_1_4:90640987-90641107:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	589.343646	1176.67274	-0.022249	-1.3112E-05	-0.88665	-0.00052254	-0.90889	-0.00053565	589.3423090162147	104.17	0.08345	104.17	104.16	104.24	0	-0.19576	-0.0006908	NaN	3.9444	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116670	+		21926	21764	12170	12171							0.09147016757128767
LAYKDKQRR	9	Unmodified	_LAYKDKQRR_					0	0	0			REV__ENST00000507916.6_1_4:90640987-90641107:+|nuORF	REV__ENST00000507916.6_1_4:90640987-90641107:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	589.343646	1176.67274	0.31865	0.00018779	0.62686	0.00036944	0.94551	0.00055723	589.3434783592949	104.56	0.058258	104.56	104.51	104.57	0.0011444	0.19576	0.0010932	NaN	3.9444	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119590	+		21927	21764	12170	12171							0.09147016757128767
LAYLRLGKN	9	Unmodified	_LAYLRLGKN_					0	0	0		nc|ENSG00000106823|O94769-2|ECM2;ENSG00000106823|ENST00000344604|ECM2	nc|ENSG00000106823|O94769-2|ECM2	nc|ENSG00000106823|O94769-2|ECM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2783813476562	2	524.319109	1046.62366	-0.52655	-0.00027608	-0.50445	-0.00026449	-1.031	-0.00054057	524.3190871252147	34.892	0.36114	34.969	34.78	35.141	0.077377					15	12	2	0	0	0	0.24311	1	6940	6940		3.9444	0	1	99030			21928	2104	12171	12172	28134	28134					0.10221728468172842
LAYMFNLV	8	Unmodified	_LAYMFNLV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80029296875	2	485.756964	969.499375	0.068384	3.3218E-05	0.51676	0.00025102	0.58514	0.00028424	485.75726921441236	42.72	0.23706	42.812	42.691	42.928	0.091362					11	8	2	0	0	0	0.32778	1	9322	9322		20.871	14.148	1	175890			21929	1211	12172	12173	28135	28135					0.01340514656499181
LCAVVTGVIWR	11	Unmodified	_LCAVVTGVIWR_					0	0	0		ENST00000473577.1_1_13:30091265-30093642:-|nuORF;ENSG00000139514|ENST00000380752|SLC7A1	ENST00000473577.1_1_13:30091265-30093642:-|nuORF	ENST00000473577.1_1_13:30091265-30093642:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.847900390625	2	608.847176	1215.6798	0.50749	0.00030899	-0.27175	-0.00016546	0.23574	0.00014353	608.8470185079906	84.018	2.8329	84.001	83.288	86.121	-0.016823					302	115	3	0	0	0	0.46059	1	22479	22479		3.2813	0	1	2678900			21930	4240	12173	12174	28136	28136					0.08058613313346541
LCDIRILS	8	Unmodified	_LCDIRILS_					0	0	0		ENST00000273480.3_1_3:141464558-141464642:+|nuORF	ENST00000273480.3_1_3:141464558-141464642:+|nuORF	ENST00000273480.3_1_3:141464558-141464642:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7651672363281	2	466.76532	931.516088	0.092111	4.2994E-05	0.17217	8.0362E-05	0.26428	0.00012336	466.76527990641983	53.064	0.54344	53.064	52.767	53.311	0					45	19	3	0	0	0	0.2191	1	12486	12486		51.63	11.68	1	1160400			21931	9097	12174	12175	28137	28137					0.04759015542447287
LCDIRILS	8	Unmodified	_LCDIRILS_					0	0	0		ENST00000273480.3_1_3:141464558-141464642:+|nuORF	ENST00000273480.3_1_3:141464558-141464642:+|nuORF	ENST00000273480.3_1_3:141464558-141464642:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7652893066406	2	466.76532	931.516088	-0.039386	-1.8384E-05	0.28133	0.00013131	0.24194	0.00011293	466.76535205857994	53.496	0.678	53.552	53.325	54.003	0.056255					60	25	3	0	0	0	0.13814	1	12671	12671		53.833	8.1332	1	1670300			21932	9097	12174	12175	28138	28138					0.04759015542447287
LCDIRILS	8	Unmodified	_LCDIRILS_					0	0	0		ENST00000273480.3_1_3:141464558-141464642:+|nuORF	ENST00000273480.3_1_3:141464558-141464642:+|nuORF	ENST00000273480.3_1_3:141464558-141464642:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7651672363281	2	466.76532	931.516088	0.30266	0.00014127	-0.028156	-1.3142E-05	0.2745	0.00012813	466.765191920063	53.655	0.73904	53.645	53.353	54.092	-0.0096054					63	27	3	0	0	0	0.26862	1	12709	12709		34.402	2.0962	1	1369700			21933	9097	12174	12175	28139	28139					0.04759015542447287
LCDIRILS	8	Unmodified	_LCDIRILS_					0	0	0		ENST00000273480.3_1_3:141464558-141464642:+|nuORF	ENST00000273480.3_1_3:141464558-141464642:+|nuORF	ENST00000273480.3_1_3:141464558-141464642:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7652587890625	2	466.76532	931.516088	0.26425	0.00012334	0.13673	6.3819E-05	0.40097	0.00018716	466.76525105895695	53.154	0.51409	53.144	52.863	53.377	-0.0096054					45	18	3	0	0	0	0.12959	1	12497	12497		74.929	9.694	1	1256200			21934	9097	12174	12175	28140	28140					0.04759015542447287
LCDLPLLLA	9	Unmodified	_LCDLPLLLA_					0	0	0			REV__ENST00000581166.5_1_17:56423089-56423377:-|nuORF	REV__ENST00000581166.5_1_17:56423089-56423377:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.26519775390625	2	485.785721	969.55689	0.40892	0.00019865	-4.2185	-0.0020493	-3.8096	-0.0018506	485.78186789026836	36.187	0.96026	36.27	35.797	36.757	0.082355					84	34	4	0	0	0	0.24913	1	7192	7192		12.532	0	1	1324100	+		21935	22482	12175	12176	28141	28141					0.07089356862081786
LCEQLCTTKP	10	Unmodified	_LCEQLCTTKP_					0	0	0			REV__ENSG00000139287|ENST00000333850|TPH2	REV__ENSG00000139287|ENST00000333850|TPH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.33447265625	2	568.277934	1134.54132	0.43129	0.00024509	-4.0854	-0.0023216	-3.6541	-0.0020765	568.2756315101456	48.966	0.16719	49.011	48.878	49.045	0.044891					7	5	2	0	0	0	0.3144	1	11211	11211		8.7454	4.801	1	170560	+		21936	15979	12176	12177	28142	28142					-0.02057297717306028
LCFLKKRRFA	10	Unmodified	_LCFLKKRRFA_					0	0	0			REV__ENST00000496455.6_1_3:155621667-155623998:+|nuORF	REV__ENST00000496455.6_1_3:155621667-155623998:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.9255065917969	3	427.925265	1280.75397	-0.11389	-4.8735E-05	0.84766	0.00036273	0.73377	0.000314	427.92552750105114	93.236	1.0411	93.323	92.995	94.036	0.08667					253	89	4	0	0	0	0.41085	1	24781	24781		0.62683	0.62683	1	858910	+		21937	21671	12177	12178	28143	28143					0.12482001195530756
LCFMLREW	8	Unmodified	_LCFMLREW_					0	0	0		ENST00000528042.1_1_11:57505186-57505402:+|nuORF	ENST00000528042.1_1_11:57505186-57505402:+|nuORF	ENST00000528042.1_1_11:57505186-57505402:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.9393920898438	2	549.267173	1096.51979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.46	1	112.44	111.94	112.94	-0.015625								0	0	0	0.37992	1	29252	29252		0.79363	0	1				21938	11578	12178	12179	28144	28144					-0.02460637955346101
LCHQRGQIL	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))HQRGQIL_	LC(1)HQRGQIL		LC(48)HQRGQIL		0	1	0		ENST00000526325.5_1_11:767245-772514:-|nuORF	ENST00000526325.5_1_11:767245-772514:-|nuORF	ENST00000526325.5_1_11:767245-772514:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8033447265625	2	562.8033	1123.59205	0.088028	4.9543E-05	0.54756	0.00030817	0.63559	0.00035771	562.803455068714	81.429	1.9109	81.498	81.137	83.048	0.068985					147	84	2	0	0	0	0.062246	1	21222	21222		48.346	6.2513	1	5844600			21939	11553	12179	12180	28145	28145	16				0.035194124425970585
LCIFDDVI	8	Unmodified	_LCIFDDVI_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2391357421875	2	469.238604	936.462655	0.014403	6.7583E-06	0.82759	0.00038834	0.84199	0.00039509	469.2389877621628	67.155	0.90533	67.155	66.768	67.673	0					62	31	3	0	0	0	0.39956	1	16905	16905		19.439	19.439	1	605810			21940	806	12180	12181	28146	28146					-0.008117819600897747
LCKAQQVL	8	Unmodified	_LCKAQQVL_					0	0	0			REV__nc|ENSG00000154655|Q8NA19-2|L3MBTL4	REV__nc|ENSG00000154655|Q8NA19-2|L3MBTL4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7708740234375	2	451.760038	901.505523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.903	1	85.987	85.487	86.487	0.084251								0	0	0	0.36169	1	22579	22579		9.3474	0	1		+		21941	16673	12181	12182	28147	28147					0.0508303288801244
LCKASFLRAF	10	Unmodified	_LCKASFLRAF_					0	0	0		ENSG00000140955|ENST00000315906|ADAD2;nc|ENSG00000140955|Q8NCV1-2|ADAD2	ENSG00000140955|ENST00000315906|ADAD2	ENSG00000140955|ENST00000315906|ADAD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.321533203125	2	578.320794	1154.62703	0.38603	0.00022325	0.33455	0.00019348	0.72057	0.00041672	578.3207795532456	82.408	2.4147	82.387	81.478	83.892	-0.020584					239	99	3	0	0	0	0.38233	1	21497	21497		6.7232	1.9672	1	1098200			21942	4344	12182	12183	28148	28148					0.055906552505121
LCKFMKETL	9	Unmodified	_LCKFMKETL_					0	0	0		nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000602906.1_1_4:13339755-13339923:+|nuORF	nc|ENSG00000205940|Q58FF8|HSP90AB2P	nc|ENSG00000205940|Q58FF8|HSP90AB2P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7953491210938	2	556.795763	1111.57697	-0.49169	-0.00027377	-0.010769	-5.9962E-06	-0.50246	-0.00027977	556.7955003142177	35.291	1.2252	35.369	34.363	35.588	0.077377					77	43	3	0	0	0	0.26612	1	7027	7027		13.906	0.39817	1	378180			21943	12916	12183	12184	28149	28149					0.025647845303865324
LCLARWKK	8	Unmodified	_LCLARWKK_					0	0	0		ENST00000563797.5_2_16:74921651-74926436:-|nuORF	ENST00000563797.5_2_16:74921651-74926436:-|nuORF	ENST00000563797.5_2_16:74921651-74926436:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.28802490234375	2	509.304947	1016.59534	-0.10474	-5.3345E-05	1.8614	0.000948	1.7566	0.00089465	509.3056515841006	13.708	0.32997	13.642	13.444	13.774	-0.066068					17	11	2	0	0	0	0.34434	1	465	465		0.79363	0.10326	1	37994			21944	11933	12184	12185	28150	28150					0.08770707287249024
LCLFAPEPLV	10	Unmodified	_LCLFAPEPLV_					0	0	0			REV__ENSG00000105219|ENST00000430325|CCNP	REV__ENSG00000105219|ENST00000430325|CCNP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.3040771484375	2	551.304278	1100.594	0.39771	0.00021926	-0.012892	-7.1072E-06	0.38482	0.00021215	551.3041837066548	20.282	0.45658	20.282	20.113	20.57	0					37	16	3	0	0	0	0.40992	1	2545	2545		1.6526	0	1	162740	+		21945	14442	12185	12186	28151	28151					0.04773028407817037
LCLLHRFCAL	10	Unmodified	_LCLLHRFCAL_					0	0	0			REV__LTR12C_dup692|chr4:69114298-69115807:-|5.576688884045835|0.1619943684727404|5.11|537.0|25|3|sense	REV__LTR12C_dup692|chr4:69114298-69115807:-|5.576688884045835|0.1619943684727404|5.11|537.0|25|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8231811523438	2	594.822647	1187.63074	0.86585	0.00051503	0.75365	0.00044829	1.6195	0.00096332	594.8229215337047	50.782	0.97127	50.792	50.35	51.321	0.0095673					87	36	3	0	0	0	0.30958	1	11757	11757		19.257	19.257	1	1259000	+		21946	22839	12186	12187	28152	28152					0.044430017527474774
LCLLHRFCAL	10	Unmodified	_LCLLHRFCAL_					0	0	0			REV__LTR12C_dup692|chr4:69114298-69115807:-|5.576688884045835|0.1619943684727404|5.11|537.0|25|3|sense	REV__LTR12C_dup692|chr4:69114298-69115807:-|5.576688884045835|0.1619943684727404|5.11|537.0|25|3|sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	594.822647	1187.63074	0.90231	0.00053671	0.60178	0.00035795	1.5041	0.00089467	594.8228259437608	50.678	0.786	50.678	50.353	51.139	0	-0.043892	-6.8176E-05	NaN	19.257	77	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1385800	+		21947	22839	12186	12187							0.044430017527474774
LCLLHRFCAL	10	Unmodified	_LCLLHRFCAL_					0	0	0			REV__LTR12C_dup692|chr4:69114298-69115807:-|5.576688884045835|0.1619943684727404|5.11|537.0|25|3|sense	REV__LTR12C_dup692|chr4:69114298-69115807:-|5.576688884045835|0.1619943684727404|5.11|537.0|25|3|sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	594.822647	1187.63074	0.94081	0.00055961	0.63832	0.00037969	1.5791	0.0009393	594.8228820007695	50.65	0.82254	50.695	50.372	51.195	0.044891	-0.026546	-2.47E-05	NaN	19.257	68	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1508600	+		21948	22839	12186	12187							0.044430017527474774
LCLMTKRK	8	Unmodified	_LCLMTKRK_					0	0	0			REV__nc|ENSG00000170959|M0R2J8|DCDC1	REV__nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2442932128906	2	496.790815	991.567077	0.36106	0.00017937	1.4117	0.00070131	1.7727	0.00088068	496.7916469385199	17.342	0.76642	17.282	17.051	17.817	-0.060429					47	26	3	0	0	0	0.344	1	1533	1533		2.5775	0.27475	1	90553	+		21949	17610	12187	12188	28153	28153					0.07095641315640933
LCLMTKRK	8	Unmodified	_LCLMTKRK_					0	0	0			REV__nc|ENSG00000170959|M0R2J8|DCDC1	REV__nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	496.790815	991.567077	0.37826	0.00018791	1.4924	0.00074143	1.8707	0.00092934	496.79177615976863	17.223	0.6469	17.223	16.981	17.628	0	-0.050248	-0.00018502	NaN	2.5775	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87724	+		21950	17610	12187	12188							0.07095641315640933
LCLSINKVCL	10	Unmodified	_LCLSINKVCL_					0	0	0			REV__ENSG00000236699|ENST00000420470|ARHGEF38	REV__ENSG00000236699|ENST00000420470|ARHGEF38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3093872070312	2	553.309038	1104.60352	0.21853	0.00012091	-1.0456	-0.00057853	-0.82705	-0.00045761	553.3094033758691	27.187	0.96706	27.166	26.592	27.559	-0.021412					58	33	3	0	0	0	0.33594	1	4581	4581		15.248	0.8431	1	205080	+		21951	19151	12188	12189	28154	28154					0.055404734216836005
LCLVSHRLYL	10	Unmodified	_LCLVSHRLYL_					0	0	0		ENSG00000179698|ENST00000323662|WDR97;nc|ENSG00000179698|A6NE52-2|WDR97	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8472900390625	2	608.847176	1215.6798	0.60642	0.00036922	-0.21119	-0.00012858	0.39523	0.00024063	608.8470173384787	83.949	2.9587	84.026	83.243	86.202	0.077095					317	115	4	0	0	0	0.39745	2	22005	22005;22232		3.9444	3.9444	1	2064800			21952	7139	12189	12190	28155;28156	28155					0.08058613313346541
LCLVSHRLYL	10	Unmodified	_LCLVSHRLYL_					0	0	0		ENSG00000179698|ENST00000323662|WDR97;nc|ENSG00000179698|A6NE52-2|WDR97	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8475341796875	2	608.847176	1215.6798	0.50749	0.00030899	-0.27175	-0.00016546	0.23574	0.00014353	608.8470185079906	84.018	2.8329	84.001	83.288	86.121	-0.016823					302	115	3	0	0	0	0.3641	4	21965	21835;21965;22149;22241		10.074	3.9444	1	2678900			21953	7139	12189	12190	28157;28158;28159;28160	28158					0.08058613313346541
LCPEQSRS	8	Unmodified	_LCPEQSRS_					0	0	0			REV__ENST00000468045.5_1_2:27353966-27354122:-|nuORF	REV__ENST00000468045.5_1_2:27353966-27354122:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.91876220703125	2	460.218734	918.422915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.936	1	91.026	90.526	91.526	0.090668								0	0	0	0.36336	1	24115	24115		8.5933	0	1		+		21954	21313	12190	12191	28161	28161					-0.03955908910779726
LCPWYWPF	8	Unmodified	_LCPWYWPF_					0	0	0			REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7592163085938	2	556.257131	1110.49971	0.36615	0.00020367	0.11978	6.663E-05	0.48593	0.0002703	556.2572826873122	79.607	0.6971	79.607	79.338	80.035	0					64	26	3	0	0	0	0.43455	1	20712	20712		11.114	2.5212	1	417920	+		21955	21347	12191	12192	28162	28162					-0.0511206562366624
LCPWYWPF	8	Unmodified	_LCPWYWPF_					0	0	0			REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2576293945312	2	556.257131	1110.49971	0.39271	0.00021845	0.22963	0.00012773	0.62234	0.00034618	556.2573601086765	79.502	0.78619	79.563	79.293	80.079	0.061417					66	30	3	0	0	0	0.41716	1	20659	20659		17.087	0.14425	1	453800	+		21956	21347	12191	12192	28163	28163					-0.0511206562366624
LCPWYWPF	8	Unmodified	_LCPWYWPF_					0	0	0			REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2576293945312	2	556.257131	1110.49971	0.34704	0.00019304	0.18064	0.00010048	0.52768	0.00029352	556.2573299958012	79.665	0.57906	79.636	79.396	79.975	-0.028923					53	21	3	0	0	0	0.33618	1	20682	20682		17.087	0	1	482590	+		21957	21347	12191	12192	28164	28164					-0.0511206562366624
LCQLQLGQME	10	Unmodified	_LCQLQLGQME_					0	0	0			REV__ENST00000420886.6_1_12:123832661-123834948:-|nuORF	REV__ENST00000420886.6_1_12:123832661-123834948:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7838134765625	2	581.783384	1161.55222	0.15721	9.1461E-05	0.94861	0.00055188	1.1058	0.00064334	581.7838514361248	22.445	0.6239	22.357	22.138	22.762	-0.087608					41	22	2	0	0	0	0.37133	1	3158	3158		8.7454	1.4562	1	158650	+		21958	20858	12192	12193	28165	28165					-0.022098953430031543
LCQSYTFYLL	10	Unmodified	_LCQSYTFYLL_					0	0	0		ENST00000378797.6_2_13:46916808-46917036:-|nuORF	ENST00000378797.6_2_13:46916808-46917036:-|nuORF	ENST00000378797.6_2_13:46916808-46917036:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.5433044433594	3	417.542375	1249.6053	-0.68925	-0.00028779	2.7011	0.0011278	2.0118	0.00084002	417.54343123501934	35.161	0.99482	35.238	34.533	35.528	0.077377					71	35	3	0	0	0	0.31267	1	7026	7026		5.7834	0	1	646540			21959	9962	12193	12194	28166	28166					-0.009521942886749457
LCRDQTCYNI	10	Unmodified	_LCRDQTCYNI_					0	0	0		ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.1866455078125	3	410.186486	1227.53763	0.27888	0.00011439	0.50956	0.00020902	0.78844	0.00032341	410.1865778426026	64.373	0.57529	64.466	64.17	64.746	0.09288					48	20	3	0	0	0	0.34896	1	15985	15985		12.856	1.3381	1	475020			21960	10989	12194	12195	28167	28167					-0.06703967491125695
LCRDQTCYNI	10	Unmodified	_LCRDQTCYNI_					0	0	0		ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.186767578125	3	410.186486	1227.53763	0.28355	0.00011631	0.81867	0.00033581	1.1022	0.00045212	410.1867031550301	64.467	0.7708	64.458	64.203	64.974	-0.0095291					53	27	3	0	0	0	0.32615	1	16022	16022		17.049	1.8001	1	639910			21961	10989	12194	12195	28168	28168					-0.06703967491125695
LCRDQTCYNI	10	Unmodified	_LCRDQTCYNI_					0	0	0		ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	410.186486	1227.53763	0.16629	6.821E-05	0.81082	0.00033259	0.97711	0.0004008	410.1867140888492	64.46	0.67211	64.46	64.238	64.91	0	-0.00098032	0.00011114	NaN	17.049	55	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373420			21962	10989	12194	12195							-0.06703967491125695
LCRDQTCYNI	10	Unmodified	_LCRDQTCYNI_					0	0	0		ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	410.186486	1227.53763	0.27888	0.00011439	0.50956	0.00020902	0.78844	0.00032341	410.1865778426026	64.373	0.57529	64.466	64.17	64.746	0.09288	0.0048671	-0.00025958	NaN	17.049	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475020			21963	10989	12194	12195							-0.06703967491125695
LCRIWYII	8	Unmodified	_LCRIWYII_					0	0	0			REV__ENSG00000224420|ENST00000420022|ADM5	REV__ENSG00000224420|ENST00000420022|ADM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3069458007812	2	540.307155	1078.59976	0.44375	0.00023976	-0.20466	-0.00011058	0.23909	0.00012918	540.3066561896046	17.004	0.46186	17.004	16.81	17.272	0					35	15	4	0	0	0	0.46022	1	1534	1534		2.3027	0	1	115290	+		21964	19111	12195	12196	28169	28169					0.06360171710139184
LCRLIIIK	8	Unmodified	_LCRLIIIK_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.3270568847656	2	486.325348	970.636143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.33	1	116.33	115.83	116.83	0								0	0	0	0.38004	1	30120	30120		0.69038	0	1		+		21965	17857	12196	12197	28170	28170					0.14965048606870823
LCRLIIIK	8	Unmodified	_LCRLIIIK_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.3271484375	2	486.325348	970.636143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.3	1	112.28	111.78	112.78	-0.015625								0	0	0	0.38004	1	29212	29212		0.69038	0	1		+		21966	17857	12196	12197	28171	28171					0.14965048606870823
LCRTSELNRF	10	Unmodified	_LCRTSELNRF_					0	0	0			REV__nc|ENSG00000162836|Q9NPH0-2|ACP6	REV__nc|ENSG00000162836|Q9NPH0-2|ACP6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.5500793457031	3	413.548523	1237.62374	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.069	1	20.069	19.569	20.569	0								0	0	0	0.37739	1	2425	2425		1.5923	0.39894	1		+		21967	17013	12197	12198	28172	28172					0.014433604058694982
LCSRRTLL	8	Unmodified	_LCSRRTLL_					0	0	0		ENST00000347869.7_1_3:50126389-50127849:+|nuORF	ENST00000347869.7_1_3:50126389-50127849:+|nuORF	ENST00000347869.7_1_3:50126389-50127849:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2846984863281	2	481.284211	960.55387	0.08091	3.8941E-05	-0.053665	-2.5828E-05	0.027245	1.3112E-05	481.28419507914856	81.935	0.58604	82.004	81.703	82.289	0.068993					50	24	3	0	0	0	0.39068	1	21396	21396		20.454	2.3186	1	339640			21968	9568	12198	12199	28173	28173					0.07201526527921942
LCTLQIVTFIH	11	Unmodified	_LCTLQIVTFIH_					0	0	0			REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.3599853515625	2	644.360116	1286.70568	0.61098	0.00039369	0.35205	0.00022685	0.96303	0.00062054	644.3602261000868	85.683	1.6634	85.683	85.04	86.703	0					113	64	3	0	0	0	0.46277	1	22421	22421		2.9952	0.90923	1	379910	+		21969	22880	12199	12200	28174	28174					0.07379462764970413
LCVDGVIFLKH	11	Unmodified	_LCVDGVIFLKH_					0	0	0		ENSG00000183808|ENST00000520560|RBM12B;RBM12B|p.V521*|1|0.34|ENSG00000183808|chr8:93734840-93734850|AAAGCACCAAC/-|frameshift_variant	ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3474731445312	2	622.347009	1242.67946	0.19645	0.00012226	0.51749	0.00032206	0.71394	0.00044432	622.3471316749807	85.769	2.5488	85.854	85.024	87.573	0.084251					256	102	3	0	0	0	0.46059	1	22441	22441		3.2813	0.28607	1	1032600			21970	7410	12200	12201	28175	28175					0.0678319359346915
LCVDGVIFLKH	11	Unmodified	_LCVDGVIFLKH_					0	0	0		ENSG00000183808|ENST00000520560|RBM12B;RBM12B|p.V521*|1|0.34|ENSG00000183808|chr8:93734840-93734850|AAAGCACCAAC/-|frameshift_variant	ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.347412109375	2	622.347009	1242.67946	0.40395	0.0002514	0.33375	0.00020771	0.7377	0.0004591	622.3470178361868	83.945	1.6275	83.928	83.346	84.973	-0.016823					115	69	2	0	0	0	0.46059	1	22080	22080		3.2813	0.78282	1	385910			21971	7410	12200	12201	28176	28176					0.0678319359346915
LCVFITDEF	9	Unmodified	_LCVFITDEF_					0	0	0		ENST00000415545.2_1_1:92108345-92109332:+|nuORF	ENST00000415545.2_1_1:92108345-92109332:+|nuORF	ENST00000415545.2_1_1:92108345-92109332:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3013305664062	2	543.762443	1085.51033	0.71648	0.00038959	1.0501	0.00057102	1.7666	0.00096061	543.762757744758	64.064	1.0623	64.157	63.711	64.773	0.09288					64	38	2	0	0	0	0.24739	1	15799	15799		8.5933	0	1	921210			21972	10311	12201	12202	28177	28177					-0.029001277598808883
LCVYLPLL	8	Unmodified	_LCVYLPLL_					0	0	0			REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7	REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2769470214844	2	467.277532	932.540511	-0.20981	-9.804E-05	0.13842	6.4679E-05	-0.071393	-3.336E-05	467.2773961578591	95.671	2.232	95.671	94.896	97.128	0					470	215	3	0	0	0	0.28567	1	25668	25668		32.454	0.33667	1	2522300	+		21973	19198	12202	12203	28178	28178					0.07154275695984325
LCWCSLYF	8	2 Carbamidomethyl (C)	_LC(Carbamidomethyl (C))WC(Carbamidomethyl (C))SLYF_	LC(1)WC(1)SLYF		LC(40)WC(40)SLYF		0	2	0		ENST00000417811.2_3_7:32763128-32763203:-|nuORF	ENST00000417811.2_3_7:32763128-32763203:-|nuORF	ENST00000417811.2_3_7:32763128-32763203:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.7496337890625	2	574.748813	1147.48307	0.65023	0.00037372	0.94148	0.00054111	1.5917	0.00091483	574.7492789774329	77.894	0.83537	77.894	77.58	78.415	0					60	30	3	0	0	0	0.2157	1	20113	20113		40.449	6.0469	1	798320			21974	10340	12203	12204	28179	28179	12;13				-0.08476934571922357
LCWCSLYF	8	2 Carbamidomethyl (C)	_LC(Carbamidomethyl (C))WC(Carbamidomethyl (C))SLYF_	LC(1)WC(1)SLYF		LC(40)WC(40)SLYF		0	2	0		ENST00000417811.2_3_7:32763128-32763203:-|nuORF	ENST00000417811.2_3_7:32763128-32763203:-|nuORF	ENST00000417811.2_3_7:32763128-32763203:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.7493896484375	2	574.748813	1147.48307	0.71139	0.00040887	0.71766	0.00041247	1.429	0.00082134	574.7492193396048	77.819	0.84272	77.875	77.597	78.439	0.05542					64	30	3	0	0	0	0.2157	1	20102	20102		40.449	6.0469	1	884200			21975	10340	12203	12204	28180	28180	12;13				-0.08476934571922357
LCYARIKSFV	10	Unmodified	_LCYARIKSFV_					0	0	0			REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF	REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.332275390625	2	600.333901	1198.65325	0.51851	0.00031128	0.41592	0.00024969	0.93443	0.00056097	600.334221089419	82.196	1.5803	82.196	81.32	82.9	0					82	61	2	0	0	0	0.39935	1	21301	21301		3.5965	1.5367	1	222120	+		21976	22171	12204	12205	28181	28181					0.06186924421990625
LCYARIKSFV	10	Unmodified	_LCYARIKSFV_					0	0	0			REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF	REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3341674804688	2	600.333901	1198.65325	0.70395	0.0004226	0.49544	0.00029743	1.1994	0.00072003	600.3340324848331	84.504	1.742	84.504	84.163	85.905	0					135	66	3	0	0	0	0.38773	3	22090	22090;22185;22469		5.7319	3.5965	1	1184300	+		21977	22171	12204	12205	28182;28183;28184	28182					0.06186924421990625
LCYARIKSFV	10	Unmodified	_LCYARIKSFV_					0	0	0			REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF	REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3341674804688	2	600.333901	1198.65325	0.71064	0.00042662	0.58222	0.00034953	1.2929	0.00077615	600.3340446435084	83.86	2.8022	83.937	83.243	86.045	0.077095					275	109	3	0	0	0	0.38233	1	22111	22111		6.7232	1.9672	1	1104800	+		21978	22171	12204	12205	28185	28185					0.06186924421990625
LCYARIKSFV	10	Unmodified	_LCYARIKSFV_					0	0	0			REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF	REV__ENST00000546722.1_1_12:107393683-107395617:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	600.333901	1198.65325	0.58529	0.00035137	0.7375	0.00044275	1.3228	0.00079411	600.3342131521302	84.025	2.7244	84.008	83.23	85.954	-0.016823	0.018131	8.7606E-05	NaN	6.7232	218	112	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1116400	+		21979	22171	12204	12205							0.06186924421990625
LCYYVCMF	8	Unmodified	_LCYYVCMF_					0	0	0			REV__ENSG00000260903|ENST00000562532|XKR7	REV__ENSG00000260903|ENST00000562532|XKR7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7946166992188	2	521.21576	1040.41697	0.48675	0.0002537	0.40349	0.00021031	0.89024	0.00046401	521.2159114084504	76.865	0.28486	76.865	76.617	76.902	0					14	10	2	0	0	0	0.34297	1	19748	19748		6.3541	1.5981	1	111400	+		21980	19279	12205	12206	28186	28186					-0.10162466738324838
LDAFARGEVFI	11	Unmodified	_LDAFARGEVFI_					0	0	0		nc|ENSG00000105963|O75689-2|ADAP1;ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1;ENSG00000105963|ENST00000265846|ADAP1	nc|ENSG00000105963|O75689-2|ADAP1	nc|ENSG00000105963|O75689-2|ADAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.3319702148438	2	619.332413	1236.65027	0.30709	0.00019019	-0.37201	-0.0002304	-0.06492	-4.0207E-05	619.3320459838643	68.915	0.75556	68.915	68.643	69.398	0					79	26	4	0	0	0	0.14098	2	17363	17363;17477		36.506	3.1246	1	1342400			21981	12637	12206	12207	28187;28188	28187					0.04141372568847146
LDAFARGEVFI	11	Unmodified	_LDAFARGEVFI_					0	0	0		nc|ENSG00000105963|O75689-2|ADAP1;ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1;ENSG00000105963|ENST00000265846|ADAP1	nc|ENSG00000105963|O75689-2|ADAP1	nc|ENSG00000105963|O75689-2|ADAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.3324584960938	2	619.332413	1236.65027	0.21228	0.00013147	-0.03178	-1.9682E-05	0.1805	0.00011179	619.3322854489854	68.937	0.97183	68.918	68.652	69.624	-0.01915					93	34	4	0	0	0	0.089036	1	17449	17449		41.956	12.115	1	2721400			21982	12637	12206	12207	28189	28189					0.04141372568847146
LDAKLRVTK	9	Unmodified	_LDAKLRVTK_					0	0	0		ENSG00000165813|ENST00000369287|CCDC186	ENSG00000165813|ENST00000369287|CCDC186	ENSG00000165813|ENST00000369287|CCDC186	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3322143554688	2	522.332216	1042.64988	0.032631	1.7044E-05	0.12828	6.7006E-05	0.16091	8.405E-05	522.3321823900931	28.046	0.61652	28.046	27.793	28.41	0.0004673					49	21	3	0	0	0	0.10059	1	4864	4864		38.176	1.1009	1	443040			21983	6003	12207	12208	28190	28190					0.1302599763962462
LDALFSQYV	9	Unmodified	_LDALFSQYV_					0	0	0		ENSG00000160218|ENST00000291574|TRAPPC10;nc|ENSG00000160218|P48553-2|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.275146484375	2	528.274032	1054.53351	0.27178	0.00014358	1.1155	0.0005893	1.3873	0.00073287	528.2743997673979	80.579	0.55769	80.644	80.421	80.979	0.065094					43	22	2	0	0	0	0.13748	1	20937	20937		32.786	3.7041	1	593930			21984	5448	12208	12209	28191	28191					0.008426343491009902
LDALFSQYV	9	Unmodified	_LDALFSQYV_					0	0	0		ENSG00000160218|ENST00000291574|TRAPPC10;nc|ENSG00000160218|P48553-2|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.274169921875	2	528.274032	1054.53351	0.49854	0.00026337	0.50393	0.00026622	1.0025	0.00052958	528.2741326891702	80.713	0.71906	80.686	80.439	81.158	-0.026825					52	28	2	0	0	0	0.13748	1	20966	20966		32.786	2.1491	1	517910			21985	5448	12208	12209	28192	28192					0.008426343491009902
LDALLTHRVR	10	Unmodified	_LDALLTHRVR_					0	0	0		ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8568115234375	2	597.359296	1192.70404	0.30058	0.00017955	-4.3236	-0.0025827	-4.023	-0.0024032	597.8567141652946	98.359	0.22855	98.42	98.363	98.591	0.061523					49	25	3	0	0	0	0.34325	1	26327	26327		13.906	7.1829	1	124070			21986	8231	12209	12210	28193	28193					0.11539589791209437
LDANNCDYEQK	11	Unmodified	_LDANNCDYEQK_					0	0	0		nc|ENSG00000116141|Q9P0L2-2|MARK1;nc|ENSG00000116141|Q9P0L2-3|MARK1;ENSG00000116141|ENST00000366917|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.7503662109375	3	438.18732	1311.54013	0.23749	0.00010407	0.35952	0.00015754	0.59702	0.00026161	438.1875028103383	37.826	0.53153	37.826	37.532	38.064	0					26	18	2	0	0	0	0.33236	1	7754	7754		2.4348	1.1051	1	104840			21987	2706	12210	12211	28194	28194					-0.10317840552534108
LDAQARVFAAV	11	Unmodified	_LDAQARVFAAV_					0	0	0			REV__ENSG00000167646|ENST00000524407|DNAAF3	REV__ENSG00000167646|ENST00000524407|DNAAF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8231811523438	2	580.824755	1159.63496	0.15011	8.7187E-05	-2.7568	-0.0016012	-2.6067	-0.001514	580.8229495561254	26.328	0.45316	26.328	26.133	26.586	0					30	15	3	0	0	0	0.42762	1	4321	4321		7.609	0.88579	1	93504	+		21988	17398	12211	12212	28195	28195					0.061525057716380616
LDARLQQIPN	10	Unmodified	_LDARLQQIPN_					0	0	0			REV__nc|ENSG00000153237|Q8NFR7-3|CCDC148	REV__nc|ENSG00000153237|Q8NFR7-3|CCDC148	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.35693359375	2	584.327662	1166.64077	0.54477	0.00031832	3.9626	0.0023155	4.5074	0.0026338	584.3298424881432	84.566	0.14084	84.553	84.441	84.581	-0.01284					6	5	2	0	0	0	0.31691	1	22163	22163		9.3831	1.2276	1	76966	+		21989	16618	12212	12213	28196	28196					0.06411604283334782
LDATDDEDES	10	Unmodified	_LDATDDEDES_					0	0	0			REV__ENSG00000089048|ENST00000617257|ESF1	REV__ENSG00000089048|ENST00000617257|ESF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3214721679688	2	555.20948	1108.40441	0.47833	0.00026557	0.19108	0.00010609	0.66941	0.00037166	555.2096949566154	64.528	0.67616	64.62	64.334	65.01	0.09288					32	24	2	0	0	0	0.31847	1	15964	15964		6.7232	0	1	152160	+		21990	14021	12213	12214	28197	28197					-0.1454583686231672
LDCAHTAASF	10	Unmodified	_LDCAHTAASF_					0	0	0		ENST00000336812.4_1_4:24586045-24586090:-|nuORF	ENST00000336812.4_1_4:24586045-24586090:-|nuORF	ENST00000336812.4_1_4:24586045-24586090:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2318725585938	2	518.231842	1034.44913	0.21748	0.0001127	-0.27364	-0.00014181	-0.056156	-2.9102E-05	518.2326823155786	28.595	3.6015	28.595	27.981	31.583	0					393	128	6	0	0	0	0.062954	1	5360	5360		56.177	4.5472	1	36171000			21991	9490	12214	12215	28198	28198					-0.06671639739329294
LDCAHTAASF	10	Unmodified	_LDCAHTAASF_					0	0	0		ENST00000336812.4_1_4:24586045-24586090:-|nuORF	ENST00000336812.4_1_4:24586045-24586090:-|nuORF	ENST00000336812.4_1_4:24586045-24586090:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2955932617188	2	518.231842	1034.44913	0.32489	0.00016837	0.77669	0.0004025	1.1016	0.00057087	518.2320785215239	32.201	0.66704	32.251	32.069	32.736	0.050766					33	23	2	0	0	0	0.29038	1	6159	6159		24.021	8.1734	1	109380			21992	9490	12214	12215	28199	28199					-0.06671639739329294
LDCYYYSWLWQ	11	Unmodified	_LDCYYYSWLWQ_					0	0	0		ENST00000544245.1_12:9098936-9102159:-|nuORF;ENST00000000412.3_12:9098936-9102159:-|nuORF	ENST00000544245.1_12:9098936-9102159:-|nuORF	ENST00000544245.1_12:9098936-9102159:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8916015625	3	513.891956	1538.65404	-0.10918	-5.6107E-05	-0.88352	-0.00045403	-0.9927	-0.00051014	513.8914735363433	28.313	0.75259	28.313	27.992	28.745	0.00046921					71	26	4	0	0	0	0.48212	1	4928	4928		0.45452	0.35968	1	477780			21993	8766	12215	12216	28200	28200					-0.09374325719613807
LDCYYYSWLWQ	11	Unmodified	_LDCYYYSWLWQ_					0	0	0		ENST00000544245.1_12:9098936-9102159:-|nuORF;ENST00000000412.3_12:9098936-9102159:-|nuORF	ENST00000544245.1_12:9098936-9102159:-|nuORF	ENST00000544245.1_12:9098936-9102159:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	513.891956	1538.65404	0.037885	1.9469E-05	-0.77087	-0.00039614	-0.73299	-0.00037668	513.8914614868631	28.332	0.63457	28.328	28.055	28.689	-0.0042572	0.021484	0.00011591	NaN	0.45452	74	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	548960			21994	8766	12215	12216							-0.09374325719613807
LDDEYADTDI	10	Unmodified	_LDDEYADTDI_					0	0	0		ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.2579956054688	2	585.245866	1168.47718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.421	1	17.303	16.803	17.803	-0.11739								0	0	0	0.38166	1	1627	1627		1.4819	0	1				21995	2475	12216	12217	28201	28201					-0.10032083068904285
LDDKYWQL	8	Unmodified	_LDDKYWQL_					0	0	0			REV__nc|ENSG00000164347|Q969S9-5|GFM2	REV__nc|ENSG00000164347|Q969S9-5|GFM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.809814453125	2	540.771657	1079.52876	0.66349	0.0003588	-1.3124	-0.0007097	-0.64889	-0.0003509	540.7707600000347	47.574	0.18723	47.621	47.482	47.669	0.047523					10	6	2	0	0	0	0.34131	1	10803	10803		7.9102	0	1	178900	+		21996	17153	12217	12218	28202	28202					-0.007822497936786021
LDDLLIHE	8	Unmodified	_LDDLLIHE_					0	0	0		ENST00000565009.5_1_16:71790048-71805048:-|nuORF	ENST00000565009.5_1_16:71790048-71805048:-|nuORF	ENST00000565009.5_1_16:71790048-71805048:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7742919921875	2	484.258382	966.502212	0.45509	0.00022038	-0.81007	-0.00039228	-0.35497	-0.0001719	484.25786453115626	40.092	0.84069	40.185	39.69	40.531	0.09267					35	29	2	0	0	0	0.41097	1	8547	8547		18.135	1.1927	1	213660			21997	11959	12218	12219	28203	28203					0.017620613150029385
LDEDLELND	9	Unmodified	_LDEDLELND_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2950439453125	2	538.243126	1074.4717	0.38929	0.00020953	-2.7815	-0.0014971	-2.3923	-0.0012876	538.7440860743664	62.177	0.51478	62.274	62.12	62.635	0.096989					25	18	2	0	0	0	0.24688	1	15379	15379		14.838	0	1	147380	+		21998	14322	12219	12220	28204	28204					-0.06255761860688835
LDEEEEDEF	9	Unmodified	_LDEEEEDEF_					0	0	0			REV__ENSG00000204950|ENST00000378075|LRRC10B	REV__ENSG00000204950|ENST00000378075|LRRC10B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.2820434570312	2	577.722224	1153.42989	0.3347	0.00019337	-0.82339	-0.00047569	-0.48868	-0.00028232	577.7215873030631	76.861	0.66935	76.861	76.559	77.228	0					49	24	3	0	0	0	0.24311	1	19861	19861		16.942	0	1	216470	+		21999	18972	12220	12221	28205	28205					-0.14068362339889973
LDEEEEDEF	9	Unmodified	_LDEEEEDEF_					0	0	0			REV__ENSG00000204950|ENST00000378075|LRRC10B	REV__ENSG00000204950|ENST00000378075|LRRC10B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.2817993164062	2	577.722224	1153.42989	0.51289	0.00029631	-1.3391	-0.00077361	-0.82617	-0.0004773	577.7214910304043	76.882	0.61166	76.85	76.626	77.237	-0.031334					52	22	4	0	0	0	0.24311	1	19917	19917		16.942	5.302	1	225440	+		22000	18972	12220	12221	28206	28206					-0.14068362339889973
LDEFKRIWSEY	11	Unmodified	_LDEFKRIWSEY_					0	0	0		nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F	nc|ENSG00000157388|Q01668-4|CACNA1D	nc|ENSG00000157388|Q01668-4|CACNA1D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.9173583984375	3	495.91727	1484.72998	0.89938	0.00044602	-0.21654	-0.00010739	0.68284	0.00033863	495.9170703216475	56.112	0.55413	56.093	55.798	56.352	-0.019077					54	19	4	0	0	0	0.43198	1	13461	13461		7.0371	0.41363	1	1814300			22001	5302	12221	12222	28207	28207					0.007003944522011807
LDEKAQRPVI	10	Unmodified	_LDEKAQRPVI_					0	0	0			REV__ENSG00000136274|ENST00000490531|NACAD	REV__ENSG00000136274|ENST00000490531|NACAD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8397827148438	2	584.837862	1167.66117	0.51711	0.00030243	0.1566	9.1588E-05	0.67372	0.00039402	584.8382402455954	45.634	0.86949	45.699	45.358	46.227	0.065048					91	31	4	0	0	0	0.26265	1	10306	10306		24.991	3.4008	1	2320900	+		22002	15804	12222	12223	28208	28208					0.08404774943142002
LDEKNKQF	8	Unmodified	_LDEKNKQF_					0	0	0			REV__ENSG00000143375|ENST00000271636|CGN	REV__ENSG00000143375|ENST00000271636|CGN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2928161621094	2	511.269281	1020.52401	0.29018	0.00014836	0.094855	4.8496E-05	0.38504	0.00019686	511.26891882034334	38.373	0.77351	38.47	38.064	38.838	0.097527					47	27	3	0	0	0	0.33245	1	8090	8090		8.5933	0	1	251330	+		22003	16170	12223	12224	28209	28209					0.0145686606357458
LDELLALSH	9	Unmodified	_LDELLALSH_					0	0	0			REV__ENSG00000204131|ENST00000633930|NHSL2	REV__ENSG00000204131|ENST00000633930|NHSL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.7977600097656	2	505.779482	1009.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.244	1	69.222	68.722	69.722	-0.022087								0	0	0	0.19013	1	17475	17475		25.399	2.2509	1		+		22004	18918	12224	12225	28210	28210					0.04002036723386482
LDELLASPEF	10	Unmodified	_LDELLASPEF_					0	0	0		nc|ENSG00000258834|P0CJ87|DUX4L4;nc|ENSG00000281652|P0CJ90|DUX4L7;ENSG00000260596|ENST00000565211|DUX4	nc|ENSG00000258834|P0CJ87|DUX4L4	nc|ENSG00000258834|P0CJ87|DUX4L4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2788696289062	2	567.289879	1132.56521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.853	1	70.853	70.353	71.353	0								0	0	0	0.34755	1	17979	17979		15.847	1.0089	1				22005	8653	12225	12226	28211	28211					0.004225823123761074
LDELPKKR	8	Unmodified	_LDELPKKR_					0	0	0			REV__ENSG00000198862|ENST00000361371|LTN1	REV__ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2955627441406	2	499.803291	997.59203	0.25348	0.00012669	0.58062	0.00029019	0.8341	0.00041689	500.30518439031727	33.019	0.30806	33.074	32.946	33.255	0.055309					15	10	3	0	0	0	0.34247	1	6397	6397		8.5933	0	1	91212	+		22006	18878	12226	12227	28212	28212					0.09313735714238192
LDEPDRPLL	9	Unmodified	_LDEPDRPLL_					0	0	0			REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4	REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2816772460938	2	534.290214	1066.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.682	1	95.678	95.178	96.178	-0.0038147								0	0	0	0.23367	1	25566	25566		11.64	0.52583	1		+		22007	16407	12227	12228	28213	28213					0.03525421752101465
LDEVFVFPYD	10	Unmodified	_LDEVFVFPYD_					0	0	0		nc|ENSG00000023041|Q9H6R6-2|ZDHHC6;ENSG00000023041|ENST00000369405|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3434448242188	2	622.297704	1242.58086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.245	1	90.245	89.745	90.745	0								0	0	0	0.38126	1	23914	23914		1.6526	0	1				22008	518	12228	12229	28214	28214					-0.03073131170549459
LDEVPRRTI	9	Unmodified	_LDEVPRRTI_					0	0	0			REV__ENSG00000150990|ENST00000308736|DHX37	REV__ENSG00000150990|ENST00000308736|DHX37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.8169555664062	2	549.81693	1097.61931	0.4478	0.00024621	-0.38913	-0.00021395	0.058664	3.2254E-05	549.8166209878958	21.469	0.8307	21.42	21.207	22.038	-0.049377					55	29	3	0	0	0	0.29638	1	2903	2903		9.3831	1.2276	1	223820	+		22009	16518	12229	12230	28215	28215					0.07440219254635849
LDFFQSDPF	9	Unmodified	_LDFFQSDPF_					0	0	0		nc|ENSG00000085832|P42566-2|EPS15;ENSG00000085832|ENST00000371733|EPS15	nc|ENSG00000085832|P42566-2|EPS15	nc|ENSG00000085832|P42566-2|EPS15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.255126953125	2	558.25584	1114.49713	0.23981	0.00013388	-0.61983	-0.00034602	-0.38002	-0.00021215	558.2551310611901	98.068	0.49947	98.061	97.754	98.253	-0.0068207					78	55	2	0	0	0	0.0083926	1	26253	26253		81.89	81.89	1	248410			22010	1266	12230	12231	28216	28216					-0.05554242547600552
LDFHPVTMAT	10	Unmodified	_LDFHPVTMAT_					0	0	0		ENST00000588652.5_1_19:45854889-45860860:-|nuORF;ENST00000391942.6_1_19:45854889-45865127:-|nuORF;ENSG00000104884|ENST00000391945|ERCC2	ENST00000588652.5_1_19:45854889-45860860:-|nuORF	ENST00000588652.5_1_19:45854889-45860860:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7631225585938	2	566.278792	1130.54303	0.095616	5.4146E-05	-2.0997	-0.001189	-2.004	-0.0011348	566.2774258860862	52.322	0.48811	52.321	52.09	52.578	-0.00080872					24	17	2	0	0	0	0.31039	1	12276	12276		13.042	0	1	249760			22011	1930	12231	12232	28217	28217					-0.017019206370378015
LDFKQHFDRNV	11	Unmodified	_LDFKQHFDRNV_					0	0	0			REV__nc|ENSG00000150275|Q96QU1-6|PCDH15	REV__nc|ENSG00000150275|Q96QU1-6|PCDH15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.27398681640625	3	473.577359	1417.71025	-0.076723	-3.6334E-05	-0.55919	-0.00026482	-0.63592	-0.00030116	473.9115944140277	25.668	0.3077	25.617	25.43	25.737	-0.05098					14	10	2	0	0	0	0.33202	1	4119	4119		5.0475	0	1	60422	+		22012	16491	12232	12233	28218	28218					0.01810063232073844
LDFLQPVPF	9	Unmodified	_LDFLQPVPF_					0	0	0			REV__nc|ENSG00000084636|Q07092-2|COL16A1	REV__nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2843017578125	2	538.294768	1074.57498	0.41265	0.00022212	0.9573	0.00051531	1.3699	0.00073743	538.2950915788914	70.603	1.5006	70.664	69.851	71.351	0.060783					110	52	3	0	0	0	0.25989	1	17769	17769		14.838	2.3067	1	317650	+		22013	13949	12233	12234	28219	28219					0.040678151084193814
LDFNFDSLI	9	Unmodified	_LDFNFDSLI_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.272216796875	2	542.27149	1082.52843	0.37146	0.00020143	1.0649	0.00057749	1.4364	0.00077892	542.7731927794733	73.994	1.2632	73.994	73.468	74.731	0					142	43	5	0	0	0	0.068501	7	18875	18830;18875;18932;18970;19020;19075;19101		46.021	24.021	1	2532900			22014	2838	12234	12235	28220;28221;28222;28223;28224;28225;28226	28221					-0.009536695135011541
LDFNFDSLI	9	Unmodified	_LDFNFDSLI_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2723999023438	2	542.27149	1082.52843	0.45679	0.0002477	0.92806	0.00050326	1.3849	0.00075097	542.7731108701897	73.929	1.2259	73.982	73.445	74.671	0.052361					150	42	5	0	0	0	0.068501	5	18881	18833;18881;18932;18978;19025		46.021	13.222	1	3051600			22015	2838	12234	12235	28227;28228;28229;28230;28231	28228					-0.009536695135011541
LDFNFDSLI	9	Unmodified	_LDFNFDSLI_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2723388671875	2	542.27149	1082.52843	0.53712	0.00029126	0.98668	0.00053505	1.5238	0.00082631	542.2725439916464	74.06	1.1984	74.03	73.502	74.7	-0.030655					132	42	4	0	0	0	0.057976	6	18898	18850;18898;18946;18961;19008;19063		49.933	13.222	1	2582100			22016	2838	12234	12235	28232;28233;28234;28235;28236;28237	28233					-0.009536695135011541
LDFPGWEEI	9	Unmodified	_LDFPGWEEI_					0	0	0			REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B	REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8236083984375	2	553.263665	1104.51278	0.42663	0.00023604	-0.10135	-5.6073E-05	0.32528	0.00017996	553.2634869413807	49.702	1.2964	49.702	48.97	50.267	0					77	47	2	0	0	0	0.2451	1	11256	11256		15.847	5.0233	1	243370	+		22017	14005	12235	12236	28238	28238					-0.03529956030570247
LDFPGWEEI	9	Unmodified	_LDFPGWEEI_					0	0	0			REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B	REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.263665	1104.51278	0.38907	0.00021526	-0.27949	-0.00015463	0.10958	6.0629E-05	553.2635503685584	49.519	1.0822	49.564	49.102	50.185	0.044891	-0.061195	-0.00016874	NaN	15.847	69	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179680	+		22018	14005	12235	12236							-0.03529956030570247
LDFQAFFPY	9	Unmodified	_LDFQAFFPY_					0	0	0		ENST00000379608.7_1_6:10412292-10412529:-|nuORF	ENST00000379608.7_1_6:10412292-10412529:-|nuORF	ENST00000379608.7_1_6:10412292-10412529:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.277587890625	2	574.276575	1146.5386	0.40273	0.00023128	0.90996	0.00052257	1.3127	0.00075384	574.2767691155052	90.128	0.97902	90.218	89.612	90.591	0.090675					113	77	2	0	0	0	0.28674	1	23858	23858		10.824	0	1	382330			22019	9970	12236	12237	28239	28239					-0.028810617882982115
LDFQAFFPY	9	Unmodified	_LDFQAFFPY_					0	0	0		ENST00000379608.7_1_6:10412292-10412529:-|nuORF	ENST00000379608.7_1_6:10412292-10412529:-|nuORF	ENST00000379608.7_1_6:10412292-10412529:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.277587890625	2	574.276575	1146.5386	0.36257	0.00020822	1.2413	0.00071285	1.6039	0.00092107	574.2767341669365	90.184	1.1537	90.185	89.552	90.706	0.0003891					178	93	3	0	0	0	0.25314	2	23869	23869;23934		15.847	5.7733	1	450610			22020	9970	12236	12237	28240;28241	28240					-0.028810617882982115
LDGDKKGRP	9	Unmodified	_LDGDKKGRP_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.2927551269531	2	493.274898	984.535243	-0.011297	-5.5726E-06	1.3972	0.00068923	1.386	0.00068366	493.2758194582646	13.854	0.51296	13.788	13.494	14.007	-0.066067					38	17	3	0	0	0	0.25988	1	535	535		3.9444	1.3669	1	81383			22021	4439	12237	12238	28242	28242					0.04235688157723416
LDGEKKTN	8	Unmodified	_LDGEKKTN_					0	0	0			REV__nc|ENSG00000160789|P02545-5|LMNA	REV__nc|ENSG00000160789|P02545-5|LMNA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.74786376953125	2	452.740357	903.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.509	1	16.447	15.947	16.947	-0.062534								0	0	0	0.35466	1	1348	1348		12.532	0	1		+		22022	16917	12238	12239	28243	28243					0.010566041381366631
LDGIVRLWDAR	11	Unmodified	_LDGIVRLWDAR_					0	0	0		ENSG00000127837|ENST00000248450|AAMP;ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF	ENSG00000127837|ENST00000248450|AAMP	ENSG00000127837|ENST00000248450|AAMP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.7698669433594	3	438.582333	1312.72517	-0.077785	-3.4115E-05	-0.38395	-0.00016839	-0.46174	-0.00020251	438.581968670146	29.117	0.83607	29.131	28.728	29.564	0.013474					43	29	2	0	0	0	0.32824	1	5114	5114		9.2438	3.0519	1	79071			22023	3337	12239	12240	28244	28244					0.0813155510006709
LDGKENLYKK	10	Unmodified	_LDGKENLYKK_					0	0	0		nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.1961975097656	3	403.227556	1206.66084	-0.20384	-8.2195E-05	0.12201	4.9197E-05	-0.081834	-3.2998E-05	403.56159902217223	24.701	0.59659	24.645	24.376	24.972	-0.055931					32	20	2	0	0	0	0.3183	1	3814	3814		3.0723	0	1	37898			22024	6006	12240	12241	28245	28245					0.06577355223271297
LDGKVIIL	8	Unmodified	_LDGKVIIL_					0	0	0		ENST00000513518.1_1_4:104013755-104017411:-|nuORF;nc|ENSG00000164039|Q9BUT1-2|BDH2;ENST00000492366.5_1_4:104007535-104017411:-|nuORF;ENSG00000164039|ENST00000296424|BDH2	ENST00000513518.1_1_4:104013755-104017411:-|nuORF	ENST00000513518.1_1_4:104013755-104017411:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2508544921875	2	435.786579	869.558604	-0.085215	-3.7136E-05	0.36193	0.00015772	0.27671	0.00012059	435.78663121187424	69.427	0.65208	69.493	69.258	69.91	0.066048					36	22	2	0	0	0	0.32099	1	17544	17544		25.399	0	1	301450			22025	5772	12241	12242	28246	28246					0.11860733942330626
LDGLRPSLL	9	Unmodified	_LDGLRPSLL_					0	0	0		chr7:91513841-91514848|467|11.65|0.36|5.03|+|2|LINC02932,LINC02932|2	chr7:91513841-91514848|467|11.65|0.36|5.03|+|2|LINC02932,LINC02932|2	chr7:91513841-91514848|467|11.65|0.36|5.03|+|2|LINC02932,LINC02932|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2984313964844	2	492.297842	982.581131	1.0215	0.0005029	-1.2005	-0.00059103	-0.17901	-8.8128E-05	492.2973840611206	56.032	0.88371	56.032	55.46	56.344	0					55	31	3	0	0	0	0.15943	1	13392	13392		32.786	1.5173	1	2005800			22026	178	12242	12243	28247	28247					0.08914333339953373
LDGTILKSRPL	11	Unmodified	_LDGTILKSRPL_					0	0	0		PSPC1|p.Q178Vfs*13|1|0.05|ENSG00000121390|chr13:19772383-19772384|TG/-|frameshift_variant;nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390|ENST00000338910|PSPC1	PSPC1|p.Q178Vfs*13|1|0.05|ENSG00000121390|chr13:19772383-19772384|TG/-|frameshift_variant	PSPC1|p.Q178Vfs*13|1|0.05|ENSG00000121390|chr13:19772383-19772384|TG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2469482421875	3	404.915201	1211.72377	-0.1474	-5.9684E-05	-2.0497	-0.00082996	-2.1971	-0.00088964	404.9155179217999	16.905	2.0566	16.905	16.242	18.299	0					252	71	5	0	0	0	0.44351	1	1578	1578		5.5233	0.12058	1	1214500			22027	2996	12243	12244	28248	28248					0.12637921011332764
LDHGPARPLE	10	Unmodified	_LDHGPARPLE_					0	0	0			REV__ENST00000521731.1_1_8:28108019-28196754:-|nuORF	REV__ENST00000521731.1_1_8:28108019-28196754:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7936401367188	2	552.793455	1103.57236	-0.37411	-0.00020681	0.96762	0.00053489	0.59351	0.00032809	552.7939104179607	34.628	0.67171	34.706	34.417	35.088	0.077377					57	23	3	0	0	0	0.24105	1	6863	6863		27.629	27.629	1	760920	+		22028	21907	12244	12245	28249	28249					0.024713597034633494
LDHISSPSL	9	Unmodified	_LDHISSPSL_					0	0	0		nc|ENSG00000152192|Q01851-2|POU4F1;ENSG00000152192|ENST00000377208|POU4F1	nc|ENSG00000152192|Q01851-2|POU4F1	nc|ENSG00000152192|Q01851-2|POU4F1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.3081359863281	2	484.756007	967.497461	0.38862	0.00018839	3.0455	0.0014763	3.4341	0.0016647	484.7581336581774	72.574	0.35516	72.628	72.352	72.707	0.053841					15	12	2	0	0	0	0.25066	1	18494	18494		7.2892	0	1	40071			22029	5003	12245	12246	28250	28250					0.01241177172244079
LDHKEGREL	9	Unmodified	_LDHKEGREL_					0	0	0		nc|ENSG00000006611|Q9Y6N9-4|USH1C	nc|ENSG00000006611|Q9Y6N9-4|USH1C	nc|ENSG00000006611|Q9Y6N9-4|USH1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.8058471679688	2	548.790912	1095.56727	0.20663	0.0001134	0.76631	0.00042055	0.97294	0.00053394	548.7914941916121	31.498	0.40418	31.498	31.231	31.636	0					32	14	3	0	0	0	0.16283	1	5921	5921		29.082	1.4528	1	251450			22030	12559	12246	12247	28251	28251					0.023310558408638826
LDHKEGREL	9	Unmodified	_LDHKEGREL_					0	0	0		nc|ENSG00000006611|Q9Y6N9-4|USH1C	nc|ENSG00000006611|Q9Y6N9-4|USH1C	nc|ENSG00000006611|Q9Y6N9-4|USH1C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.790912	1095.56727	0.26993	0.00014814	0.045298	2.4859E-05	0.31523	0.000173	548.7911087801515	31.462	0.39117	31.505	31.209	31.6	0.042366	0.012121	-0.00030587	NaN	29.082	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311560			22031	12559	12246	12247							0.023310558408638826
LDHKEGREL	9	Unmodified	_LDHKEGREL_					0	0	0		nc|ENSG00000006611|Q9Y6N9-4|USH1C	nc|ENSG00000006611|Q9Y6N9-4|USH1C	nc|ENSG00000006611|Q9Y6N9-4|USH1C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	548.790912	1095.56727	0.44805	0.00024588	0.14276	7.8346E-05	0.59081	0.00032423	548.7911574723698	31.434	0.49394	31.475	31.178	31.672	0.040991	-0.017527	-0.0001989	NaN	29.082	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282230			22032	12559	12246	12247							0.023310558408638826
LDHKICVIGFV	11	Unmodified	_LDHKICVIGFV_					0	0	0		ENST00000556973.1_1_14:102198142-102198797:+|nuORF	ENST00000556973.1_1_14:102198142-102198797:+|nuORF	ENST00000556973.1_1_14:102198142-102198797:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3473510742188	2	622.347009	1242.67946	0.49695	0.00030928	0.23441	0.00014588	0.73136	0.00045516	622.3470765266429	85.83	2.7365	85.83	84.994	87.731	0					216	110	3	0	0	0	0.46277	1	22428	22428		2.9952	0	1	1062300			22033	11865	12247	12248	28252	28252					0.06783193593491887
LDHKRPLIK	9	Unmodified	_LDHKRPLIK_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;ENST00000475640.1_1_3:122437249-122439770:+|nuORF	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.7758178710938	2	560.353483	1118.69241	0.29198	0.00016361	-0.67835	-0.00038012	-0.38638	-0.00021651	560.3530854956285	21.494	0.39507	21.444	21.179	21.574	-0.049377					25	13	2	0	0	0	0.26031	1	2796	2796		1.4819	0	1	90552			22034	6700	12248	12249	28253	28253					0.13781392767873513
LDHKSRIF	8	Unmodified	_LDHKSRIF_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3009338378906	2	508.287808	1014.56106	0.63501	0.00032277	0.57696	0.00029326	1.212	0.00061603	508.2882715530309	47.119	0.48912	47.119	46.813	47.302	0					37	16	3	0	0	0	0.37937	1	10654	10654		21.747	0.20967	1	1046600			22035	2078	12249	12250	28254	28254					0.05436582399988765
LDHKSRIF	8	Unmodified	_LDHKSRIF_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3009033203125	2	508.287808	1014.56106	0.88522	0.00044995	0.17572	8.9316E-05	1.0609	0.00053926	508.2880690834021	47.126	0.48254	47.18	46.851	47.334	0.054371					41	16	3	0	0	0	0.32886	1	10632	10632		21.747	3.6117	1	1083300			22036	2078	12249	12250	28255	28255					0.05436582399988765
LDIDTCTLPF	10	Unmodified	_LDIDTCTLPF_					0	0	0			REV__nc|ENSG00000086717|O14829-4|PPEF1	REV__nc|ENSG00000086717|O14829-4|PPEF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.8292846679688	2	569.278457	1136.54236	0.4049	0.0002305	3.2439	0.0018467	3.6488	0.0020772	569.782886214566	72.857	0.44367	72.828	72.657	73.101	-0.029305					20	15	2	0	0	0	0.31267	1	18549	18549		14.838	6.245	1	153390	+		22037	13979	12250	12251	28256	28256					-0.020447600767283802
LDIIIDELF	9	Unmodified	_LDIIIDELF_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8060302734375	2	545.805165	1089.59578	0.68396	0.00037331	0.76394	0.00041696	1.4479	0.00079027	545.8055862918497	65.579	1.3936	65.567	65.148	66.541	-0.01133					100	50	3	0	0	0	0.1669	1	16403	16403		28.487	1.6032	1	2156400	+		22038	18568	12251	12252	28257	28257					0.0545636069741704
LDINIIPNF	9	Unmodified	_LDINIIPNF_					0	0	0			REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3548583984375	2	529.797675	1057.5808	0.7317	0.00038765	-1.7908	-0.00094876	-1.0591	-0.0005611	529.7976807043626	77.187	0.78824	77.187	76.983	77.771	0					37	28	2	0	0	0	0.25526	1	20058	20058		7.9102	0.62092	1	112520	+		22039	14373	12252	12253	28258	28258					0.05430913620079991
LDINIIPNF	9	Unmodified	_LDINIIPNF_					0	0	0			REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	529.797675	1057.5808	0.57411	0.00030416	-0.64921	-0.00034395	-0.075106	-3.9791E-05	529.7977545776228	77.278	0.39648	77.333	77.06	77.456	0.055412	0.063034	0.00044753	NaN	12.532	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122800	+		22040	14373	12252	12253							0.05430913620079991
LDINIIPNF	9	Unmodified	_LDINIIPNF_					0	0	0			REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	529.797675	1057.5808	0.85565	0.00045332	-0.68237	-0.00036152	0.17328	9.1804E-05	529.79796457737	77.322	0.55396	77.291	77.045	77.599	-0.031334	0.020479	0.00041241	NaN	12.532	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133140	+		22041	14373	12252	12253							0.05430913620079991
LDIREFTL	8	Unmodified	_LDIREFTL_					0	0	0		ZNF735|p.F250Lfs*96|1|0.42|ENSG00000223614|chr7:64219799-64219799|T/-|frameshift_variant	ZNF735|p.F250Lfs*96|1|0.42|ENSG00000223614|chr7:64219799-64219799|T/-|frameshift_variant	ZNF735|p.F250Lfs*96|1|0.42|ENSG00000223614|chr7:64219799-64219799|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.78387451171875	2	503.782025	1005.5495	0.36071	0.00018172	-1.0381	-0.00052298	-0.67741	-0.00034127	503.78405033550666	82.124	0.58807	82.124	81.699	82.287	0					32	21	2	0	0	0	0.41758	1	21413	21413		16.942	0	1	259610			22042	23420	12253	12254	28259	28259					0.04694340586001999
LDIRTYQR	8	Unmodified	_LDIRTYQR_					0	0	0			REV__ENSG00000170677|ENST00000397942|SOCS6	REV__ENSG00000170677|ENST00000397942|SOCS6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.796875	2	532.795998	1063.57744	0.59902	0.00031916	-0.13545	-7.217E-05	0.46357	0.00024699	532.7958021870039	29.01	0.96486	29.01	28.64	29.605	0					77	34	4	0	0	0	0.45307	1	5226	5226		4.756	0.42677	1	877780	+		22043	17593	12254	12255	28260	28260					0.048196635660815446
LDIVEQYIF	9	Unmodified	_LDIVEQYIF_					0	0	0			REV__nc|ENSG00000240038|P19961-2|AMY2B	REV__nc|ENSG00000240038|P19961-2|AMY2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.7898559570312	2	570.30279	1138.59103	0.66687	0.00038032	2.2692	0.0012941	2.9361	0.0016744	570.3034338582147	78.635	0.44485	78.604	78.327	78.772	-0.030426					23	16	2	0	0	0	0.26879	1	20319	20319		13.508	2.684	1	115370	+	+	22044	13269	12255	12256	28261	28261					0.027274765546508206
LDIVEQYIF	9	Unmodified	_LDIVEQYIF_					0	0	0			REV__nc|ENSG00000240038|P19961-2|AMY2B	REV__nc|ENSG00000240038|P19961-2|AMY2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	570.30279	1138.59103	0.66687	0.00038032	2.2692	0.0012941	2.9361	0.0016744	570.3034338582147	78.635	0.44485	78.604	78.327	78.772	-0.030426	0.08407	0.00043028	NaN	13.508	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115370	+	+	22045	13269	12255	12256							0.027274765546508206
LDKCPGQEL	9	Unmodified	_LDKCPGQEL_					0	0	0			REV__nc|ENSG00000198055|P43250-3|GRK6	REV__nc|ENSG00000198055|P43250-3|GRK6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2747802734375	2	501.749867	1001.48518	0.27066	0.00013581	0.33192	0.00016654	0.60258	0.00030234	501.74995043080645	24.294	0.34283	24.255	24.049	24.392	-0.038927					18	11	2	0	0	0	0.26188	1	3719	3719		1.6526	0	1	44377	+		22046	18794	12256	12257	28262	28262					-0.015501825624596677
LDKDLYPVING	11	Unmodified	_LDKDLYPVING_					0	0	0		ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF	ENSG00000108602|ENST00000225740|ALDH3A1	ENSG00000108602|ENST00000225740|ALDH3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.2276306152344	3	416.227444	1245.6605	0.02784	1.1588E-05	0.20161	8.3916E-05	0.22945	9.5503E-05	416.22754225672657	16.647	0.63791	16.533	16.33	16.968	-0.11434					51	22	4	0	0	0	0.41896	1	1398	1398		4.4062	0.28952	1	242340			22047	2201	12257	12258	28263	28263					0.04749935503446068
LDKFVKIVN	9	Unmodified	_LDKFVKIVN_					0	0	0		ENSG00000012983|ENST00000682126|MAP4K5;ENST00000554990.5_1_14:50886739-50915587:-|nuORF	ENSG00000012983|ENST00000682126|MAP4K5	ENSG00000012983|ENST00000682126|MAP4K5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8632202148438	2	538.329142	1074.64373	0.67942	0.00036575	-3.7883	-0.0020394	-3.1089	-0.0016736	538.8289043726893	91.798	0.094765	91.798	91.737	91.832	0.00046539					6	5	2	0	0	0	0.25431	1	24374	24374		9.3831	2.0939	1	76889			22048	458	12258	12259	28264	28264					0.10939479408125408
LDKKFHGIL	9	Unmodified	_LDKKFHGIL_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2587890625	2	535.821484	1069.62842	0.42206	0.00022615	0.95485	0.00051163	1.3769	0.00073778	535.8217640428923	46.18	0.89817	46.18	45.72	46.618	0					56	32	3	0	0	0	0.25323	1	10446	10446		10.074	2.1638	1	412780			22049	2207	12259	12260	28265	28265					0.09638612610956443
LDKKFHGIL	9	Unmodified	_LDKKFHGIL_					0	0	0		ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	ENSG00000108671|ENST00000261712|PSMD11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	535.821484	1069.62842	0.16639	8.9157E-05	1.5577	0.00083465	1.7241	0.00092381	535.8221714436586	45.996	0.74186	46.056	45.565	46.307	0.059834	-0.0094921	0.00035068	NaN	10.074	41	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438610			22050	2207	12259	12260							0.09638612610956443
LDKLLPAEWRI	11	Unmodified	_LDKLLPAEWRI_					0	0	0			REV__ENST00000460006.5_1_20:5177814-5177943:+|nuORF	REV__ENST00000460006.5_1_20:5177814-5177943:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.9344787597656	3	451.934484	1352.78162	0.55821	0.00025228	-0.57095	-0.00025803	-0.012738	-5.7566E-06	451.9341418821658	54.764	0.65642	54.764	54.405	55.061	0					60	23	4	0	0	0	0.36161	1	13051	13051		16.275	2.0564	1	1188800	+		22051	21196	12260	12261	28266	28266					0.1193418293673858
LDKLRKNAFA	10	Unmodified	_LDKLRKNAFA_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;ENST00000434365.1_1_X:114938170-114938437:+|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.7474975585938	2	588.348397	1174.68224	0.49883	0.00029349	-0.26461	-0.00015568	0.23422	0.0001378	588.3480700265478	44.412	0.45873	44.481	44.223	44.682	0.068569					26	16	2	0	0	0	0.31691	1	9857	9857		9.3831	0.63772	1	216670			22052	8613	12261	12262	28267	28267					0.10188785042646487
LDKLYTRETT	10	Unmodified	_LDKLYTRETT_					0	0	0			REV__ENSG00000152767|ENST00000319562|FARP1	REV__ENSG00000152767|ENST00000319562|FARP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.2142028808594	3	413.890832	1238.65067	-0.071586	-2.9629E-05	1.1587	0.00047958	1.0871	0.00044995	413.8914305705962	17.512	0.59776	17.512	17.122	17.719	0					26	20	2	0	0	0	0.38773	1	1647	1647		3.0723	0	1	54475	+		22053	16594	12262	12263	28268	28268					0.040887474980536354
LDKNTKEQ	8	Unmodified	_LDKNTKEQ_					0	0	0			REV__nc|ENSG00000102904|Q2TAA8|TSNAXIP1	REV__nc|ENSG00000102904|Q2TAA8|TSNAXIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2489318847656	2	488.258914	974.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.948	1	88.948	88.448	89.448	0								0	0	0	0.35843	1	23517	23517		10.824	1.4765	1		+		22054	14340	12263	12264	28269	28269					0.01500275683918062
LDKQAPSLF	9	Unmodified	_LDKQAPSLF_					0	0	0			REV__ENSG00000198093|ENST00000354957|ZNF649	REV__ENSG00000198093|ENST00000354957|ZNF649	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7764892578125	2	509.782025	1017.5495	0.37428	0.0001908	-4.262	-0.0021727	-3.8877	-0.0019819	510.2817671601323	89.958	1.0226	89.958	89.584	90.607	0.00039673					201	84	4	0	0	0	0.23007	1	23852	23852		19.257	1.1106	1	287220	+		22055	18799	12264	12265	28270	28270					0.04142340585997317
LDKQAPSLF	9	Unmodified	_LDKQAPSLF_					0	0	0			REV__ENSG00000198093|ENST00000354957|ZNF649	REV__ENSG00000198093|ENST00000354957|ZNF649	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2811584472656	2	509.782025	1017.5495	0.37428	0.0001908	-4.262	-0.0021727	-3.8877	-0.0019819	510.2817671601323	89.958	1.0226	89.958	89.584	90.607	0.00039673					201	84	4	0	0	0	0.25066	1	23939	23939		11.64	1.4569	1	287220	+		22056	18799	12264	12265	28271	28271					0.04142340585997317
LDKVFHLPT	9	Unmodified	_LDKVFHLPT_					0	0	0		nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH;ENST00000439616.6_1_7:44706345-44714012:+|nuORF;OGDH|p.D227Gfs*11|1|0.39|ENSG00000105953|chr7:44673831-44673835|TGACC/-|frameshift_variant;nc|ENSG00000105953|Q02218-3|OGDH	nc|ENSG00000105953|Q02218-2|OGDH	nc|ENSG00000105953|Q02218-2|OGDH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7718505859375	2	535.305667	1068.59678	0.46863	0.00025086	0.1309	7.0073E-05	0.59953	0.00032093	535.305988505059	43.65	1.3188	43.734	42.625	43.944	0.083996					66	48	2	0	0	0	0.2322	1	9607	9607		10.074	2.1638	1	219130			22057	2039	12265	12266	28272	28272					0.06522619856991696
LDLAFVVTI	9	Unmodified	_LDLAFVVTI_					0	0	0		ENST00000263238.6_1_2:114713257-114715078:+|nuORF	ENST00000263238.6_1_2:114713257-114715078:+|nuORF	ENST00000263238.6_1_2:114713257-114715078:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2659912109375	2	495.797143	989.579734	0.38653	0.00019164	1.2236	0.00060666	1.6101	0.0007983	495.7970024992496	80.217	0.55907	80.217	79.953	80.513	0					26	20	2	0	0	0	0.24848	1	20923	20923		13.906	3.0821	1	90417			22058	8999	12266	12267	28273	28273					0.08452699251199647
LDLCLISV	8	Unmodified	_LDLCLISV_					0	0	0		ENSG00000196772|ENST00000641093|OR14A16	ENSG00000196772|ENST00000641093|OR14A16	ENSG00000196772|ENST00000641093|OR14A16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2490539550781	2	438.248972	874.48339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.314	1	67.314	66.814	67.814	0								0	0	0	0.34492	1	16896	16896		16.942	4.4107	1				22059	7902	12267	12268	28274	28274					0.04112808419586145
LDLDQPALSNA	11	Unmodified	_LDLDQPALSNA_					0	0	0			REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.783203125	2	578.79586	1155.57717	0.13032	7.5427E-05	0.20322	0.00011762	0.33353	0.00019305	578.796160158038	28.957	0.51964	28.97	28.728	29.248	0.013474					40	18	4	0	0	0	0.36943	1	5130	5130		15.248	2.206	1	325670	+		22060	23077	12268	12269	28275	28275					0.005601990555987868
LDLFPDFK	8	Unmodified	_LDLFPDFK_					0	0	0			REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.3081970214844	2	497.765843	993.517133	0.29493	0.00014681	-0.53371	-0.00026566	-0.23878	-0.00011886	497.76539793532334	31.001	0.60943	31.001	30.674	31.284	0					39	21	2	0	0	0	0.34247	1	5804	5804		8.5933	0	1	116930	+		22061	16034	12269	12270	28276	28276					0.020115531829901556
LDLFPDFK	8	Unmodified	_LDLFPDFK_					0	0	0			REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.30828857421875	2	497.765843	993.517133	0.23495	0.00011695	-0.74829	-0.00037247	-0.51334	-0.00025552	497.76539381428216	31.025	0.70101	31.052	30.704	31.405	0.027157					36	25	2	0	0	0	0.34092	1	5782	5782		13.508	0	1	177560	+		22062	16034	12269	12270	28277	28277					0.020115531829901556
LDLHPHAPS	9	Unmodified	_LDLHPHAPS_					0	0	0			REV__ENST00000471698.5_1_10:104155544-104155691:+|nuORF	REV__ENST00000471698.5_1_10:104155544-104155691:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.29510498046875	2	493.756341	985.498129	0.59552	0.00029404	-0.4484	-0.0002214	0.14712	7.2642E-05	493.7560965560392	29.327	0.77044	29.327	29.089	29.86	0					37	27	2	0	0	0	0.25066	1	5308	5308		11.64	0.81637	1	201400	+		22063	21358	12270	12271	28278	28278					0.004800166119366622
LDLHPHAPS	9	Unmodified	_LDLHPHAPS_					0	0	0			REV__ENST00000471698.5_1_10:104155544-104155691:+|nuORF	REV__ENST00000471698.5_1_10:104155544-104155691:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	493.756341	985.498129	0.41377	0.0002043	-0.14841	-7.3278E-05	0.26537	0.00013103	493.7562251001296	29.27	0.47563	29.282	29.025	29.5	0.012266	-0.030011	-5.5227E-05	NaN	11.64	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214530	+		22064	21358	12270	12271							0.004800166119366622
LDLHPHAPS	9	Unmodified	_LDLHPHAPS_					0	0	0			REV__ENST00000471698.5_1_10:104155544-104155691:+|nuORF	REV__ENST00000471698.5_1_10:104155544-104155691:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.756341	985.498129	0.1837	9.0703E-05	0.12694	6.2677E-05	0.31064	0.00015338	493.756452825144	29.314	0.73705	29.328	29.113	29.85	0.013474	0.015358	0.00021668	NaN	11.64	34	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233310	+		22065	21358	12270	12271							0.004800166119366622
LDLHVLLLE	9	Unmodified	_LDLHVLLLE_					0	0	0		nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11;ENST00000487682.5_1_1:156909888-156915005:-|nuORF	nc|ENSG00000132694|O15085|ARHGEF11	nc|ENSG00000132694|O15085|ARHGEF11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2401123046875	2	532.82115	1063.62775	0.41932	0.00022342	0.76028	0.00040509	1.1796	0.00062851	532.8217099084583	35.597	0.30391	35.68	35.57	35.874	0.082355					16	10	2	0	0	0	0.25938	1	7139	7139		4.3292	0.73274	1	202800			22066	3659	12271	12272	28279	28279					0.09847773171213703
LDLIMLFK	8	Unmodified	_LDLIMLFK_					0	0	0			REV__ENST00000543124.1_1_12:133624462-133624816:+|nuORF	REV__ENST00000543124.1_1_12:133624462-133624816:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.30810546875	2	496.796089	991.577625	0.11706	5.8156E-05	3.4781	0.0017279	3.5952	0.0017861	496.79810839164924	31.244	0.46339	31.286	31.052	31.515	0.042364					29	16	2	0	0	0	0.3366	1	5787	5787		18.135	18.135	1	261050	+		22067	22145	12272	12273	28280	28280					0.08149947241724931
LDLIMLFK	8	Unmodified	_LDLIMLFK_					0	0	0			REV__ENST00000543124.1_1_12:133624462-133624816:+|nuORF	REV__ENST00000543124.1_1_12:133624462-133624816:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.30828857421875	2	496.796089	991.577625	0.29553	0.00014682	3.0827	0.0015315	3.3782	0.0016783	496.79806628555303	31.176	0.46316	31.216	31.016	31.479	0.040991					32	16	2	0	0	0	0.3366	1	5782	5782		18.135	3.2967	1	221340	+		22068	22145	12272	12273	28281	28281					0.08149947241724931
LDLNFKTV	8	Unmodified	_LDLNFKTV_					0	0	0			REV__ENSG00000204920|ENST00000270014|ZNF155	REV__ENSG00000204920|ENST00000270014|ZNF155	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.79888916015625	2	475.271293	948.528032	0.40761	0.00019372	-0.12682	-6.0273E-05	0.28079	0.00013345	475.27116110882787	42.033	0.48851	42.125	41.981	42.47	0.091362					23	16	2	0	0	0	0.33293	1	9065	9065		14.838	0	1	314640	+		22069	18970	12273	12274	28282	28282					0.05170955557287016
LDLRELSV	8	Unmodified	_LDLRELSV_					0	0	0		ENST00000587010.5_1_17:76783725-76794501:-|nuORF;ENST00000542802.7_1_17:76793816-76794501:-|nuORF;ENST00000592231.5_1_17:76793816-76794505:-|nuORF;ENST00000589225.5_1_17:76793816-76794065:-|nuORF	ENST00000587010.5_1_17:76783725-76794501:-|nuORF	ENST00000587010.5_1_17:76783725-76794501:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7744445800781	2	472.7742	943.533846	0.10321	4.8793E-05	0.366	0.00017303	0.4692	0.00022183	472.7742444400196	32.867	0.62655	32.867	32.633	33.259	0					44	21	3	0	0	0	0.079438	1	6313	6313		64.236	6.765	1	465810			22070	11734	12274	12275	28283	28283					0.05982054068954312
LDLRELSV	8	Unmodified	_LDLRELSV_					0	0	0		ENST00000587010.5_1_17:76783725-76794501:-|nuORF;ENST00000542802.7_1_17:76793816-76794501:-|nuORF;ENST00000592231.5_1_17:76793816-76794505:-|nuORF;ENST00000589225.5_1_17:76793816-76794065:-|nuORF	ENST00000587010.5_1_17:76783725-76794501:-|nuORF	ENST00000587010.5_1_17:76783725-76794501:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7742614746094	2	472.7742	943.533846	0.23463	0.00011093	0.097136	4.5923E-05	0.33177	0.00015685	472.77409305611485	32.808	0.55335	32.863	32.618	33.171	0.055309					48	19	3	0	0	0	0.22	2	6286	6286;6338		39.957	3.2239	1	489990			22071	11734	12274	12275	28284;28285	28284					0.05982054068954312
LDLRELSV	8	Unmodified	_LDLRELSV_					0	0	0		ENST00000587010.5_1_17:76783725-76794501:-|nuORF;ENST00000542802.7_1_17:76793816-76794501:-|nuORF;ENST00000592231.5_1_17:76793816-76794505:-|nuORF;ENST00000589225.5_1_17:76793816-76794065:-|nuORF	ENST00000587010.5_1_17:76783725-76794501:-|nuORF	ENST00000587010.5_1_17:76783725-76794501:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7742004394531	2	472.7742	943.533846	0.22053	0.00010426	0.17065	8.068E-05	0.39118	0.00018494	472.77415750538586	32.821	0.85014	32.876	32.553	33.403	0.054375					54	30	3	0	0	0	0.16948	1	6287	6287		48.346	0	1	478210			22072	11734	12274	12275	28286	28286					0.05982054068954312
LDLRELSV	8	Unmodified	_LDLRELSV_					0	0	0		ENST00000587010.5_1_17:76783725-76794501:-|nuORF;ENST00000542802.7_1_17:76793816-76794501:-|nuORF;ENST00000592231.5_1_17:76793816-76794505:-|nuORF;ENST00000589225.5_1_17:76793816-76794065:-|nuORF	ENST00000587010.5_1_17:76783725-76794501:-|nuORF	ENST00000587010.5_1_17:76783725-76794501:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	472.7742	943.533846	0.22053	0.00010426	0.17065	8.068E-05	0.39118	0.00018494	472.77415750538586	32.821	0.85014	32.876	32.553	33.403	0.054375	0.0071587	-4.2547E-05	NaN	64.236	54	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478210			22073	11734	12274	12275							0.05982054068954312
LDLRPKKTRAT	11	Unmodified	_LDLRPKKTRAT_					0	0	0		ENST00000450819.1_1_1:237144684-237145005:+|nuORF	ENST00000450819.1_1_1:237144684-237145005:+|nuORF	ENST00000450819.1_1_1:237144684-237145005:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8987426757812	2	649.898786	1297.78302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.082	1	93.082	92.582	93.582	0								0	0	0	0.38194	1	24782	24782		1.1933	0	1				22074	10643	12275	12276	28287	28287					0.14603817025499666
LDLVMVILF	9	Unmodified	_LDLVMVILF_					0	0	0		nc|ENSG00000008441|Q14938-3|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000147862|O00712-4|NFIB;nc|ENSG00000141905|P08651-2|NFIC;nc|ENSG00000162599|Q12857-2|NFIA;ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000147862|O00712-2|NFIB;nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000141905|P08651-6|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000147862|O00712|NFIB;ENSG00000141905|ENST00000443272|NFIC;nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA	nc|ENSG00000008441|Q14938-3|NFIX;nc|ENSG00000162599|Q12857-3|NFIA	nc|ENSG00000008441|Q14938-3|NFIX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8172607421875	2	531.817021	1061.61949	0.28452	0.00015131	-0.084087	-4.4719E-05	0.20044	0.00010659	531.8168017704928	76.34	1.7327	76.393	75.862	77.595	0.053413					176	61	4	0	0	0	0.30623	1	19934	19934		7.9102	0.62092	1	2898500			22075	398;5584	12276	12277	28288	28288					0.09114502930242452
LDLVMVILF	9	Unmodified	_LDLVMVILF_					0	0	0		nc|ENSG00000008441|Q14938-3|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000147862|O00712-4|NFIB;nc|ENSG00000141905|P08651-2|NFIC;nc|ENSG00000162599|Q12857-2|NFIA;ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000147862|O00712-2|NFIB;nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000141905|P08651-6|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000147862|O00712|NFIB;ENSG00000141905|ENST00000443272|NFIC;nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA	nc|ENSG00000008441|Q14938-3|NFIX;nc|ENSG00000162599|Q12857-3|NFIA	nc|ENSG00000008441|Q14938-3|NFIX	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.817021	1061.61949	0.46407	0.0002468	-0.18624	-9.9048E-05	0.27783	0.00014775	531.8167429014583	76.347	2.4844	76.347	75.012	77.496	0	-0.029414	2.4606E-05	NaN	7.9102	252	90	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3260700			22076	398;5584	12276	12277							0.09114502930242452
LDLVMVILF	9	Unmodified	_LDLVMVILF_					0	0	0		nc|ENSG00000008441|Q14938-3|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000147862|O00712-4|NFIB;nc|ENSG00000141905|P08651-2|NFIC;nc|ENSG00000162599|Q12857-2|NFIA;ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000147862|O00712-2|NFIB;nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000141905|P08651-6|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000147862|O00712|NFIB;ENSG00000141905|ENST00000443272|NFIC;nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA	nc|ENSG00000008441|Q14938-3|NFIX;nc|ENSG00000162599|Q12857-3|NFIA	nc|ENSG00000008441|Q14938-3|NFIX	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	531.817021	1061.61949	0.63217	0.0003362	-0.31931	-0.00016982	0.31285	0.00016638	531.8166732122041	76.422	2.5899	76.39	74.951	77.541	-0.031487	0.013244	-0.00011693	NaN	7.9102	258	95	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3408100			22077	398;5584	12276	12277							0.09114502930242452
LDLYEWEYNF	10	Unmodified	_LDLYEWEYNF_					0	0	0		ENST00000432815.2_1_1:173332252-173332432:-|nuORF	ENST00000432815.2_1_1:173332252-173332432:-|nuORF	ENST00000432815.2_1_1:173332252-173332432:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.229736328125	3	464.543321	1390.60813	-1.0402	-0.00048322	-0.11869	-5.5135E-05	-1.1589	-0.00053835	464.543789961186	35.109	0.4656	35.109	34.917	35.382	0					32	16	4	0	0	0	0.32148	1	7037	7037		1.4551	0.12547	1	95893			22078	10485	12277	12278	28289	28289					-0.07154647630181898
LDLYEWEYNF	10	Unmodified	_LDLYEWEYNF_					0	0	0		ENST00000432815.2_1_1:173332252-173332432:-|nuORF	ENST00000432815.2_1_1:173332252-173332432:-|nuORF	ENST00000432815.2_1_1:173332252-173332432:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.22979736328125	3	464.543321	1390.60813	-0.9992	-0.00046417	0.3331	0.00015474	-0.6661	-0.00030943	464.5434581589208	35.045	0.57775	35.12	34.904	35.481	0.075306					31	20	2	0	0	0	0.32068	1	7018	7018		1.7423	0.52744	1	148850			22079	10485	12277	12278	28290	28290					-0.07154647630181898
LDLYEWEYNF	10	Unmodified	_LDLYEWEYNF_					0	0	0		ENST00000432815.2_1_1:173332252-173332432:-|nuORF	ENST00000432815.2_1_1:173332252-173332432:-|nuORF	ENST00000432815.2_1_1:173332252-173332432:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.2297668457031	3	464.543321	1390.60813	-0.81147	-0.00037696	-0.10469	-4.8635E-05	-0.91617	-0.0004256	464.543377087283	34.951	0.61016	35.028	34.78	35.39	0.077377					42	21	3	0	0	0	0.32095	1	7008	7008		1.4551	0.34536	1	194130			22080	10485	12277	12278	28291	28291					-0.07154647630181898
LDMAVLKD	8	Unmodified	_LDMAVLKD_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2299499511719	2	452.744053	903.473554	-0.00031167	-1.4111E-07	3.339	0.0015117	3.3387	0.0015116	452.74591891389366	18.643	0.17545	18.643	18.535	18.71	0					6	5	2	0	0	0	0.34337	1	2012	2012		5.2307	0.90143	1	17121			22081	1910	12278	12279	28292	28292					0.01795620414213772
LDMHESEPF	9	Unmodified	_LDMHESEPF_					0	0	0		ENST00000513884.1_1_5:97912076-97912961:+|nuORF	ENST00000513884.1_1_5:97912076-97912961:+|nuORF	ENST00000513884.1_1_5:97912076-97912961:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2575073242188	2	552.736957	1103.45936	0.41876	0.00023146	-2.525	-0.0013957	-2.1063	-0.0011642	552.735216508519	71.85	0.38461	71.85	71.664	72.048	0					19	13	2	0	0	0	0.25066	1	18246	18246		7.2892	0	1	124830			22082	11405	12279	12280	28293	28293					-0.08823076804742414
LDMVKVMTFAL	11	Unmodified	_LDMVKVMTFAL_					0	0	0		PTPDC1|p.R743Kfs*9|1|0.72|ENSG00000158079|chr9:94107900-94107901|-/A|frameshift_variant;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1;nc|ENSG00000158079|A2A3K4|PTPDC1	PTPDC1|p.R743Kfs*9|1|0.72|ENSG00000158079|chr9:94107900-94107901|-/A|frameshift_variant	PTPDC1|p.R743Kfs*9|1|0.72|ENSG00000158079|chr9:94107900-94107901|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.57489013671875	3	423.231144	1266.6716	-0.12413	-5.2534E-05	-2.9405	-0.0012445	-3.0646	-0.001297	423.5646524039772	19.231	0.40648	19.175	18.989	19.395	-0.055693					24	13	3	0	0	0	0.33182	1	2184	2184		5.4027	0.68679	1	36072			22083	5338	12280	12281	28294	28294					0.04893298281717762
LDNLHLVKDW	10	Unmodified	_LDNLHLVKDW_					0	0	0		ENSG00000181450|ENST00000343776|ZNF678	ENSG00000181450|ENST00000343776|ZNF678	ENSG00000181450|ENST00000343776|ZNF678	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.5610656738281	3	418.227667	1251.66117	-0.30946	-0.00012942	4.4346	0.0018547	4.1252	0.0017253	418.2292787919037	35.434	0.11774	35.512	35.441	35.559	0.077377					5	3	2	0	0	0	0.3183	1	7094	7094		3.0723	0	1	172840			22084	7235	12281	12282	28295	28295					0.04540774943143333
LDNLWRIN	8	Unmodified	_LDNLWRIN_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.332275390625	2	522.285266	1042.55598	0.14067	7.3469E-05	0.013282	6.9371E-06	0.15395	8.0406E-05	522.2851956378431	27.632	1.1084	27.61	27.015	28.123	-0.021412					77	38	3	0	0	0	0.34272	1	4845	4845		7.9102	0.62092	1	258310	+		22085	18755	12282	12283	28296	28296					0.03640278537386621
LDNLWRIN	8	Unmodified	_LDNLWRIN_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	522.285266	1042.55598	0.24208	0.00012644	0.082186	4.2925E-05	0.32427	0.00016936	522.2852127285691	27.564	1.0562	27.564	26.979	28.036	0	-0.0090466	1.8827E-05	NaN	7.9102	61	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271870	+		22086	18755	12282	12283							0.03640278537386621
LDNLWRIN	8	Unmodified	_LDNLWRIN_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.285266	1042.55598	0.14342	7.4908E-05	0.10017	5.2316E-05	0.24359	0.00012722	522.2852837005767	27.557	1.0237	27.545	27.042	28.066	-0.01156	-0.027921	3.7609E-05	NaN	7.9102	68	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345390	+		22087	18755	12282	12283							0.03640278537386621
LDNTYDYYLWW	11	Unmodified	_LDNTYDYYLWW_					0	0	0			REV__ENST00000530397.1_1_1:95293042-95354234:+|nuORF	REV__ENST00000530397.1_1_1:95293042-95354234:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8980712890625	3	517.897875	1550.6718	0.78854	0.00040838	-0.63926	-0.00033107	0.14928	7.7312E-05	517.897608376172	37.331	0.91	37.331	36.985	37.895	0					76	32	4	0	0	0	0.45629	1	7663	7663		3.8459	2.5163	1	1030500	+		22088	16145	12283	12284	28297	28297					-0.08151287193095413
LDNTYDYYLWW	11	Unmodified	_LDNTYDYYLWW_					0	0	0			REV__ENST00000530397.1_1_1:95293042-95354234:+|nuORF	REV__ENST00000530397.1_1_1:95293042-95354234:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8980712890625	3	517.897875	1550.6718	0.37528	0.00019436	-0.29383	-0.00015217	0.081451	4.2183E-05	517.8978274674943	37.22	0.79023	37.307	36.95	37.741	0.08741					76	28	5	0	0	0	0.45202	1	7621	7621		4.4062	1.9714	1	923570	+		22089	16145	12283	12284	28298	28298					-0.08151287193095413
LDNTYDYYLWW	11	Unmodified	_LDNTYDYYLWW_					0	0	0			REV__ENST00000530397.1_1_1:95293042-95354234:+|nuORF	REV__ENST00000530397.1_1_1:95293042-95354234:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8981323242188	3	517.897875	1550.6718	0.45008	0.0002331	-0.2849	-0.00014755	0.16518	8.5549E-05	517.8977966814093	37.153	0.64857	37.246	36.924	37.573	0.093018					61	23	4	0	0	0	0.43198	1	7613	7613		7.0371	4.7844	1	1283300	+		22090	16145	12283	12284	28299	28299					-0.08151287193095413
LDPGGRSDIT	10	Unmodified	_LDPGGRSDIT_					0	0	0		ENSG00000070886|ENST00000166244|EPHA8;nc|ENSG00000070886|P29322-2|EPHA8	ENSG00000070886|ENST00000166244|EPHA8	ENSG00000070886|ENST00000166244|EPHA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.76416015625	2	515.76182	1029.50909	0.019408	1.001E-05	2.94	0.0015164	2.9594	0.0015264	515.7633246506193	61.293	0.4194	61.284	61.133	61.552	-0.0094566					22	15	2	0	0	0	0.26265	1	15055	15055		24.991	1.8425	1	516940			22091	945	12284	12285	28300	28300					-0.00448625804438052
LDPGGRSDIT	10	Unmodified	_LDPGGRSDIT_					0	0	0		ENSG00000070886|ENST00000166244|EPHA8;nc|ENSG00000070886|P29322-2|EPHA8	ENSG00000070886|ENST00000166244|EPHA8	ENSG00000070886|ENST00000166244|EPHA8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	515.76182	1029.50909	0.13753	7.0934E-05	2.9921	0.0015432	3.1296	0.0016141	515.7632890036748	61.357	0.46909	61.357	61.128	61.597	0	0.030365	-7.2831E-05	NaN	24.991	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	552310			22092	945	12284	12285							-0.00448625804438052
LDPGGRSDIT	10	Unmodified	_LDPGGRSDIT_					0	0	0		ENSG00000070886|ENST00000166244|EPHA8;nc|ENSG00000070886|P29322-2|EPHA8	ENSG00000070886|ENST00000166244|EPHA8	ENSG00000070886|ENST00000166244|EPHA8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	515.76182	1029.50909	-0.018906	-9.7512E-06	3.4728	0.0017911	3.4539	0.0017814	515.7637125435439	61.243	0.50703	61.34	61.194	61.701	0.096985	0.012724	0.00042303	NaN	24.991	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	533920			22093	945	12284	12285							-0.00448625804438052
LDPHGHLI	8	Unmodified	_LDPHGHLI_					0	0	0		nc|ENSG00000149922|O95947-2|TBX6;ENSG00000149922|ENST00000395224|TBX6	nc|ENSG00000149922|O95947-2|TBX6	nc|ENSG00000149922|O95947-2|TBX6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7218933105469	2	451.248152	900.481751	0.35078	0.00015829	0.96447	0.00043522	1.3152	0.0005935	451.24886666055784	58.774	0.72605	58.76	58.331	59.058	-0.014267					50	25	3	0	0	0	0.34147	1	14265	14265		6.3541	3.4649	1	382520			22094	4894	12285	12286	28301	28301					0.02752935445869298
LDPHLFLV	8	Unmodified	_LDPHLFLV_					0	0	0			REV__ENSG00000119523|ENST00000476832|ALG2	REV__ENSG00000119523|ENST00000476832|ALG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.2763977050781	2	477.276378	952.538203	0.69015	0.00032939	-0.00081282	-3.8794E-07	0.68934	0.00032901	477.27610200707676	60.649	0.48648	60.64	60.431	60.918	-0.0094566					51	17	4	0	0	0	0.28861	1	14886	14886		32.117	0	1	1131500	+		22095	15045	12286	12287	28302	28302					0.06003563282513369
LDPHLHET	8	Unmodified	_LDPHLHET_					0	0	0			REV__ENST00000487563.1_1_7:100853563-100853710:-|nuORF	REV__ENST00000487563.1_1_7:100853563-100853710:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.24212646484375	2	481.240524	960.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.912	1	88.001	87.501	88.501	0.089195								0	0	0	0.37078	1	23194	23194		5.2307	2.6532	1		+		22096	14519	12287	12288	28303	28303					-0.015319761420073519
LDPNMDLRT	9	Unmodified	_LDPNMDLRT_					0	0	0		nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48;ENST00000466405.1_1_3:39136105-39136231:+|nuORF;nc|ENSG00000114742|Q8TAF3-2|WDR48;nc|ENSG00000114742|Q8TAF3-5|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	nc|ENSG00000114742|Q8TAF3-4|WDR48	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7822265625	2	537.766049	1073.51754	0.33165	0.00017835	-0.13376	-7.1931E-05	0.1979	0.00010642	537.7658760348957	25.715	0.6938	25.715	25.384	26.078	0					28	23	2	0	0	0	0.25202	1	4126	4126		10.824	1.4408	1	130180			22097	2580	12288	12289	28304	28304					-0.01627395159448497
LDQDIPMVQ	9	Unmodified	_LDQDIPMVQ_					0	0	0		ENST00000540040.2_1_17:22023744-22023807:+|nuORF	ENST00000540040.2_1_17:22023744-22023807:+|nuORF	ENST00000540040.2_1_17:22023744-22023807:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3548583984375	2	529.762975	1057.5114	0.80511	0.00042652	-2.2805	-0.0012081	-1.4754	-0.00078159	529.7623588837506	77.442	0.61658	77.442	77.179	77.796	0					35	22	2	0	0	0	0.25202	1	20058	20058		10.824	1.4408	1	155690			22098	11715	12289	12290	28305	28305					-0.01505913390974456
LDQLTKFF	8	Unmodified	_LDQLTKFF_					0	0	0			REV__nc|ENSG00000185261|Q8IV33|KIAA0825	REV__nc|ENSG00000185261|Q8IV33|KIAA0825	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7977600097656	2	506.279118	1010.54368	0.36594	0.00018527	-0.68402	-0.00034631	-0.31808	-0.00016104	506.2788966669927	68.55	1.0591	68.55	68.226	69.285	0					48	34	2	0	0	0	0.29634	1	17480	17480		20.454	0	1	289180	+		22099	18367	12290	12291	28306	28306					0.03883242074334703
LDREERAQYTL	11	Unmodified	_LDREERAQYTL_					0	0	0		nc|ENSG00000140937|P55287-2|CDH11;ENSG00000140937|ENST00000268603|CDH11;ENSG00000101542|ENST00000262717|CDH20	nc|ENSG00000140937|P55287-2|CDH11	nc|ENSG00000140937|P55287-2|CDH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2406005859375	3	465.240524	1392.69974	0.12135	5.6456E-05	-0.87451	-0.00040686	-0.75316	-0.0003504	465.24002865486784	20.936	0.60398	20.936	20.678	21.282	0					45	20	3	0	0	0	0.45629	1	2762	2762		3.8459	2.1036	1	113940			22100	1708	12291	12292	28307	28307					0.01910035787000197
LDRKEASS	8	Unmodified	_LDRKEASS_					0	0	0		ENST00000435366.2_2_20:33864837-33865065:-|nuORF	ENST00000435366.2_2_20:33864837-33865065:-|nuORF	ENST00000435366.2_2_20:33864837-33865065:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.74786376953125	2	453.237981	904.461409	0.091658	4.1543E-05	-0.023941	-1.0851E-05	0.067717	3.0692E-05	453.2381401881759	16.324	0.51995	16.262	16.038	16.558	-0.062534					34	17	3	0	0	0	0.34353	1	1348	1348		4.756	0	1	62065			22101	10507	12292	12293	28308	28308					0.0053571999538917225
LDRQLEPGA	9	Unmodified	_LDRQLEPGA_					0	0	0			REV__ENST00000357447.6_1_10:13779874-13779913:-|nuORF	REV__ENST00000357447.6_1_10:13779874-13779913:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.78521728515625	2	499.766906	997.519259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.913	1	49.913	49.413	50.413	0								0	0	0	0.19804	1	11535	11535		23.148	1.4018	1		+		22102	20215	12293	12294	28309	28309					0.02039981920813716
LDRRQEKKF	9	Unmodified	_LDRRQEKKF_					0	0	0		nc|ENSG00000152578|P48058-2|GRIA4;ENSG00000152578|ENST00000282499|GRIA4;ENST00000525032.1_1_11:105481676-105732994:+|nuORF	nc|ENSG00000152578|P48058-2|GRIA4;ENST00000525032.1_1_11:105481676-105732994:+|nuORF	ENST00000525032.1_1_11:105481676-105732994:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.724609375	3	407.235045	1218.6833	-0.2101	-8.5561E-05	1.1012	0.00044844	0.89109	0.00036288	407.23527936117426	31.538	0.35625	31.58	31.296	31.652	0.042366					21	12	2	0	0	0	0.2422	1	5892	5892		19.362	7.1213	1	236600			22103	5025;11530	12294	12295	28310	28310					0.08270999411547564
LDRRSKLEEE	10	Unmodified	_LDRRSKLEEE_					0	0	0			REV__ENSG00000129675|ENST00000250617|ARHGEF6	REV__ENSG00000129675|ENST00000250617|ARHGEF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.234619140625	3	425.561486	1273.66263	-0.019701	-8.3841E-06	-1.8581	-0.00079075	-1.8778	-0.00079913	425.8946268871917	20.005	0.48429	19.889	19.642	20.126	-0.11592					25	16	2	0	0	0	0.32132	1	2458	2458		0.62683	0.063655	1	45886	+		22104	15427	12295	12296	28311	28311					0.036743642412375266
LDRYQTALE	9	Unmodified	_LDRYQTALE_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD	nc|ENSG00000198947|P11532-4|DMD	nc|ENSG00000198947|P11532-4|DMD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3558349609375	2	554.785296	1107.55604	0.48327	0.00026811	0.23926	0.00013274	0.72253	0.00040085	555.2869214373312	36.211	0.61506	36.293	36.036	36.651	0.082355					43	21	3	0	0	0	0.24848	1	7412	7412		13.906	0	1	581510			22105	8170	12296	12297	28312	28312					0.006562337466903045
LDSEMLDLV	9	Unmodified	_LDSEMLDLV_					0	0	0			REV__nc|ENSG00000166484|Q13164-4|MAPK7	REV__nc|ENSG00000166484|Q13164-4|MAPK7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8194580078125	2	517.757358	1033.50016	0.56645	0.00029328	-1.0581	-0.00054786	-0.49168	-0.00025457	517.7564577225901	82.819	0.76381	82.819	82.534	83.298	0					41	28	2	0	0	0	0.24311	1	21694	21694		11.64	0.81637	1	298510	+		22106	17326	12297	12298	28313	28313					-0.015247354851226191
LDSLGLQDYV	10	Unmodified	_LDSLGLQDYV_					0	0	0		ENSG00000064999|ENST00000360359|ANKS1A	ENSG00000064999|ENST00000360359|ANKS1A	ENSG00000064999|ENST00000360359|ANKS1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7950439453125	2	561.787504	1121.56045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.63	1	56.709	56.209	57.209	0.078674								0	0	0	0.25932	1	13607	13607		32.786	8.7651	1				22107	801	12298	12299	28314	28314					0.0045369816962193
LDSLHKFQ	8	Unmodified	_LDSLHKFQ_					0	0	0		nc|ENSG00000183773|Q96NN9-3|AIFM3;nc|ENSG00000183773|Q96NN9-2|AIFM3;ENSG00000183773|ENST00000440238|AIFM3	nc|ENSG00000183773|Q96NN9-3|AIFM3	nc|ENSG00000183773|Q96NN9-3|AIFM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.29541015625	2	494.266542	986.51853	0.44121	0.00021807	1.8942	0.00093622	2.3354	0.0011543	494.267704821798	29.628	0.36055	29.641	29.469	29.83	0.012266					20	11	3	0	0	0	0.33993	1	5291	5291		16.942	3.4344	1	89195			22108	7403	12299	12300	28315	28315					0.024731872717552505
LDSLRIYL	8	Unmodified	_LDSLRIYL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.79205322265625	2	496.792392	991.570232	0.19989	9.9305E-05	-1.0761	-0.00053459	-0.87619	-0.00043528	496.79203810693866	17.431	0.61348	17.314	17.081	17.694	-0.11739					34	21	2	0	0	0	0.46022	1	1636	1636		2.3027	0	1	72253			22109	7854	12300	12301	28316	28316					0.07410930965647822
LDSMSRSLT	9	Unmodified	_LDSMSRSLT_					0	0	0		ENST00000375882.6_1_6:31634663-31635723:+|nuORF	ENST00000375882.6_1_6:31634663-31635723:+|nuORF	ENST00000375882.6_1_6:31634663-31635723:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2638244628906	2	505.252774	1008.491	0.14532	7.3421E-05	1.3726	0.00069349	1.5179	0.00076691	505.2534311598261	76.262	1.5397	76.315	75.837	77.376	0.053413					104	43	3	0	0	0	0.1669	1	19744	19744		28.487	1.6032	1	2814700			22110	9914	12301	12302	28317	28317					-0.012910840507856847
LDSRRRREIPR	11	Unmodified	_LDSRRRREIPR_					0	0	0		ENST00000607632.1_1_1:2985775-3103053:+|nuORF	ENST00000607632.1_1_1:2985775-3103053:+|nuORF	ENST00000607632.1_1_1:2985775-3103053:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8005065917969	3	485.286802	1452.83858	0.32104	0.0001558	-1.1908	-0.00057789	-0.86978	-0.00042209	485.28600815071843	89.593	0.36418	89.593	89.369	89.733	0					35	24	2	0	0	0	0.33348	1	23653	23653		0.40827	0	1	104080			22111	12313	12302	12303	28318	28318					0.13027043265833527
LDSRRRREIPR	11	Unmodified	_LDSRRRREIPR_					0	0	0		ENST00000607632.1_1_1:2985775-3103053:+|nuORF	ENST00000607632.1_1_1:2985775-3103053:+|nuORF	ENST00000607632.1_1_1:2985775-3103053:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	485.286802	1452.83858	0.30289	0.00014699	-0.7235	-0.0003511	-0.42061	-0.00020412	485.28610139474745	89.556	0.62421	89.646	89.34	89.964	0.090569	0.077373	0.00018361	NaN	0.40827	65	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161360			22112	12313	12302	12303							0.13027043265833527
LDSRRRREIPR	11	Unmodified	_LDSRRRREIPR_					0	0	0		ENST00000607632.1_1_1:2985775-3103053:+|nuORF	ENST00000607632.1_1_1:2985775-3103053:+|nuORF	ENST00000607632.1_1_1:2985775-3103053:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	485.286802	1452.83858	0.39014	0.00018933	-0.80433	-0.00039033	-0.41419	-0.000201	485.62096885674475	89.468	0.54283	89.468	89.289	89.831	-0.00081635	-0.1014	6.5918E-05	NaN	0.40827	51	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193270			22113	12313	12302	12303							0.13027043265833527
LDSTRDTMI	9	Unmodified	_LDSTRDTMI_					0	0	0			REV__ENSG00000174206|ENST00000398055|KICS2	REV__ENSG00000174206|ENST00000398055|KICS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2569580078125	2	526.258056	1050.50156	0.2913	0.0001533	-1.4147	-0.0007445	-1.1234	-0.0005912	526.2572670132253	59.675	0.62638	59.675	59.38	60.006	0					49	21	3	0	0	0	0.088443	1	14539	14539		39.95	1.7741	1	1007000	+		22114	17818	12303	12304	28319	28319					-0.021671013963668884
LDSVHKLR	8	Unmodified	_LDSVHKLR_					0	0	0		GAPVD1|p.I935Mfs*130|1|0.23|ENSG00000165219|chr9:125337518-125337518|T/-|frameshift_variant	GAPVD1|p.I935Mfs*130|1|0.23|ENSG00000165219|chr9:125337518-125337518|T/-|frameshift_variant	GAPVD1|p.I935Mfs*130|1|0.23|ENSG00000165219|chr9:125337518-125337518|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2878112792969	2	484.287808	966.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.919	1	12.919	12.419	13.419	0								0	0	0	0.37183	1	270	270		4.756	0	1				22115	12347	12304	12305	28320	28320					0.07644582399996125
LDTASLRFLFY	11	Unmodified	_LDTASLRFLFY_					0	0	0			REV__ENSG00000280021|ENST00000624103|OR51F1	REV__ENSG00000280021|ENST00000624103|OR51F1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.5611877441406	3	449.243206	1344.70779	0.17773	7.9843E-05	-0.77113	-0.00034643	-0.5934	-0.00026658	449.2430166295784	17.43	0.50355	17.43	17.186	17.69	0					25	17	2	0	0	0	0.33326	1	1648	1648		1.4551	0.12547	1	25759	+		22116	19357	12305	12306	28321	28321					0.04922214774433087
LDTEIEYMMEL	11	Unmodified	_LDTEIEYMMEL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.2873840332031	3	462.877095	1385.60946	0.29488	0.00013649	1.3142	0.0006083	1.609	0.00074479	462.8782895899466	45.151	0.43065	45.226	44.988	45.418	0.075047					50	15	5	0	0	0	0.33287	1	10108	10108		2.8433	0.93691	1	460280			22117	3655	12306	12307	28322	28322					-0.06792517647932073
LDTFFNKQAF	10	Unmodified	_LDTFFNKQAF_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8764953613281	3	410.876634	1229.60807	0.016855	6.9253E-06	-0.41984	-0.0001725	-0.40299	-0.00016558	410.87650834158273	66.696	0.93787	66.683	66.327	67.265	-0.013588					71	33	4	0	0	0	0.36698	1	16665	16665		9.544	2.9136	1	547020	+		22118	15947	12307	12308	28323	28323					0.002453971604609251
LDTSDQTTK	9	Unmodified	_LDTSDQTTK_					0	0	0			REV__ENSG00000188037|ENST00000343257|CLCN1	REV__ENSG00000188037|ENST00000343257|CLCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.310546875	2	504.745836	1007.47712	0.36235	0.00018289	3.6158	0.0018251	3.9782	0.002008	504.7477324036021	58.815	0.4805	58.906	58.645	59.126	0.091301					22	16	2	0	0	0	0.24289	1	14327	14327		13.042	0	1	106940	+		22119	18536	12308	12309	28324	28324					-0.02632038278238724
LDTSDQTTK	9	Unmodified	_LDTSDQTTK_					0	0	0			REV__ENSG00000188037|ENST00000343257|CLCN1	REV__ENSG00000188037|ENST00000343257|CLCN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	504.745836	1007.47712	0.33068	0.00016691	2.9287	0.0014782	3.2594	0.0016452	504.74754992529324	58.968	0.47886	58.968	58.654	59.133	0	0.031293	-0.00034077	NaN	36.506	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92816	+		22120	18536	12308	12309							-0.02632038278238724
LDVERWGTL	9	Unmodified	_LDVERWGTL_					0	0	0			REV__ENST00000367627.7_1_1:179050729-179050927:+|nuORF	REV__ENST00000367627.7_1_1:179050729-179050927:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3087158203125	2	544.790381	1087.56621	0.58419	0.00031826	-0.53885	-0.00029356	0.045348	2.4705E-05	544.7900236762349	39.503	0.33552	39.603	39.481	39.817	0.099407					16	11	2	0	0	0	0.18123	1	8383	8383		27.629	0	1	229720	+		22121	20320	12309	12310	28325	28325					0.025928414719601278
LDVLNLVLD	9	Unmodified	_LDVLNLVLD_					0	0	0		RNF26|p.T19N|1|0.42|ENSG00000173456|chr11:119335178-119335178|C/A|missense_variant	RNF26|p.T19N|1|0.42|ENSG00000173456|chr11:119335178-119335178|C/A|missense_variant	RNF26|p.T19N|1|0.42|ENSG00000173456|chr11:119335178-119335178|C/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.3097229003906	2	507.297507	1012.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.34	1	94.422	93.922	94.922	0.082779								0	0	0	0.2362	1	25160	25160		10.824	0	1				22122	23370	12310	12311	28326	28326					0.07467493900230693
LDVPLPSTIR	10	Unmodified	_LDVPLPSTIR_					0	0	0		nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY	nc|ENSG00000068120|Q13057-2|COASY	nc|ENSG00000068120|Q13057-2|COASY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8300170898438	2	555.829506	1109.64446	0.084523	4.698E-05	1.7619	0.0009793	1.8464	0.0010263	555.8305684833152	27.427	0.7048	27.406	27.1	27.805	-0.021412					40	24	3	0	0	0	0.37454	1	4676	4676		8.1555	0.24537	1	136850			22123	877	12311	12312	28327	28327					0.09402274057174509
LDVPLPSTIR	10	Unmodified	_LDVPLPSTIR_					0	0	0		nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY	nc|ENSG00000068120|Q13057-2|COASY	nc|ENSG00000068120|Q13057-2|COASY	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	555.829506	1109.64446	0.12658	7.0354E-05	1.5849	0.00088091	1.7114	0.00095127	555.8306949987012	27.439	0.46311	27.439	27.237	27.7	0	0.016302	-0.00012319	NaN	8.1555	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122410			22124	877	12311	12312							0.09402274057174509
LDVPLRPVGF	10	Unmodified	_LDVPLRPVGF_					0	0	0		ENST00000404241.6_1_22:39916751-39917530:+|nuORF;ENST00000393544.2_1_11:113660942-113661119:+|nuORF	ENST00000404241.6_1_22:39916751-39917530:+|nuORF	ENST00000404241.6_1_22:39916751-39917530:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2747192382812	2	556.826766	1111.63898	0.14944	8.3213E-05	-0.51376	-0.00028608	-0.36432	-0.00020286	556.8264238053783	57.703	0.91331	57.686	57.197	58.111	-0.0172					51	33	2	0	0	0	0.3156	1	13905	13905		10.824	2.9138	1	392070			22125	10052	12312	12313	28328	28328					0.08762595265397977
LDVPLVKIQ	9	Unmodified	_LDVPLVKIQ_					0	0	0			REV__ENST00000533085.2_1_12:89894792-89896268:+|nuORF	REV__ENST00000533085.2_1_12:89894792-89896268:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.78173828125	2	512.823692	1023.63283	0.41297	0.00021178	2.6455	0.0013567	3.0585	0.0015685	512.8252463226282	85.893	0.26306	85.884	85.699	85.962	-0.0090027					12	9	2	0	0	0	0.22596	1	22537	22537		15.847	3.3156	1	79450	+		22126	22041	12313	12314	28329	28329					0.12196077033866004
LDVTKHQLR	9	Unmodified	_LDVTKHQLR_					0	0	0		ENSG00000133812|ENST00000256190|SBF2;ENST00000525040.5_1_11:9801967-9809483:-|nuORF	ENSG00000133812|ENST00000256190|SBF2	ENSG00000133812|ENST00000256190|SBF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2581787109375	2	555.324922	1108.63529	0.62789	0.00034868	-1.6285	-0.00090434	-1.0006	-0.00055566	555.3244137390561	45.925	0.71423	45.925	45.424	46.138	0					43	25	2	0	0	0	0.25202	1	10251	10251		10.824	0	1	409150			22127	3731	12314	12315	28330	28330					0.08531925491502079
LDWETVIT	8	Unmodified	_LDWETVIT_					0	0	0			REV__nc|ENSG00000197658|Q8N4F4-3|SLC22A24	REV__nc|ENSG00000197658|Q8N4F4-3|SLC22A24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2486877441406	2	488.752933	975.491313	0.44881	0.00021936	-0.99479	-0.00048621	-0.54598	-0.00026685	488.7525745735033	90.609	0.45541	90.609	90.353	90.808	0.00039673					60	34	2	0	0	0	0.34218	1	24019	24019		9.3474	0	1	193920	+		22128	18756	12315	12316	28331	28331					0.0025865894069738715
LDWIRKEI	8	Unmodified	_LDWIRKEI_					0	0	0			REV__ENST00000407690.5_1_22:26906586-26908398:-|nuORF	REV__ENST00000407690.5_1_22:26906586-26908398:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.8109130859375	2	536.811116	1071.60768	0.42639	0.00022889	-0.79587	-0.00042723	-0.36948	-0.00019834	536.8106510938891	37.327	0.78349	37.414	37.09	37.873	0.087406					40	27	2	0	0	0	0.30988	1	7666	7666		24.991	0	1	649270	+		22129	20745	12316	12317	28332	28332					0.07474022231258459
LDWKLIIR	8	Unmodified	_LDWKLIIR_					0	0	0			REV__ENST00000475645.1_1_6:106634320-106634398:-|nuORF	REV__ENST00000475645.1_1_6:106634320-106634398:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2821044921875	2	528.831852	1055.64915	0.64725	0.00034229	-0.16868	-8.9203E-05	0.47857	0.00025308	528.83198269252	44.442	0.62278	44.442	44.232	44.855	0					30	22	2	0	0	0	0.33293	1	9892	9892		6.2058	0	1	260960	+		22130	21410	12317	12318	28333	28333					0.12355202990602265
LDWKLIIR	8	Unmodified	_LDWKLIIR_					0	0	0			REV__ENST00000475645.1_1_6:106634320-106634398:-|nuORF	REV__ENST00000475645.1_1_6:106634320-106634398:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2821044921875	2	528.831852	1055.64915	0.5523	0.00029207	0.22056	0.00011664	0.77286	0.00040871	528.8319884376566	44.092	0.69868	44.17	44.102	44.8	0.077518					34	25	2	0	0	0	0.32099	1	9915	9915		19.257	7.6167	1	216130	+		22131	21410	12317	12318	28334	28334					0.12355202990602265
LDWQYHEL	8	Unmodified	_LDWQYHEL_					0	0	0			REV__ENSG00000174292|ENST00000688331|TNK1	REV__ENSG00000174292|ENST00000688331|TNK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7944946289062	2	552.261456	1102.50836	-0.61269	-0.00033837	4.1798	0.0023083	3.5671	0.00197	552.765024405442	34.528	0.38864	34.528	34.336	34.725	0					17	13	2	0	0	0	0.34218	1	6861	6861		9.3474	0	1	87097	+		22132	17824	12318	12319	28335	28335					-0.03879420453495186
LDWVKVTL	8	Unmodified	_LDWVKVTL_					0	0	0			REV__nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C	REV__nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7997131347656	2	487.289485	972.564418	0.46913	0.0002286	-0.010612	-5.1712E-06	0.45852	0.00022343	487.2897040967583	85.748	2.566	85.748	84.527	87.093	0					133	99	2	0	0	0	0.4397	2	22497	22497;22606		9.3474	2.0582	1	144700	+		22133	13785	12319	12320	28336;28337	28336					0.07703832454001258
LDWVKVTL	8	Unmodified	_LDWVKVTL_					0	0	0			REV__nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C	REV__nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.28961181640625	2	487.289485	972.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.08	1	112.08	111.58	112.58	0								0	0	0	0.37724	1	29142	29142		2.3027	0	1		+		22134	13785	12319	12320	28338	28338					0.07703832454001258
LDWVKVTL	8	Unmodified	_LDWVKVTL_					0	0	0			REV__nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C	REV__nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.8011779785156	2	487.289485	972.564418	0.48499	0.00023633	1.3502	0.00065793	1.8352	0.00089426	487.29056656114454	84.075	0.39182	84.152	83.998	84.39	0.077095					24	15	2	0	0	0	0.42446	1	22007	22007		14.582	2.9414	1	91872	+		22135	13785	12319	12320	28339	28339					0.07703832454001258
LDWVKVTL	8	Unmodified	_LDWVKVTL_					0	0	0			REV__nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C	REV__nc|ENSG00000074211|Q9Y2T4-3|PPP2R2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7998962402344	2	487.289485	972.564418	0.49302	0.00024024	-0.20125	-9.8068E-05	0.29177	0.00014218	487.2896460804139	85.709	2.4062	85.7	84.714	87.12	-0.0090027					130	93	2	0	0	0	0.41097	3	22622	22462;22571;22622		18.135	5.2343	1	174650	+		22136	13785	12319	12320	28340;28341;28342	28342					0.07703832454001258
LDYEELPELSF	11	Unmodified	_LDYEELPELSF_					0	0	0		PCDHB11|p.V349Cfs*21|1|0.22|ENSG00000197479|chr5:141200817-141200818|-/T|frameshift_variant;ENSG00000197479|ENST00000354757|PCDHB11	PCDHB11|p.V349Cfs*21|1|0.22|ENSG00000197479|chr5:141200817-141200818|-/T|frameshift_variant	PCDHB11|p.V349Cfs*21|1|0.22|ENSG00000197479|chr5:141200817-141200818|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2186584472656	3	452.218614	1353.63401	0.20831	9.42E-05	0.046299	2.0937E-05	0.2546	0.00011514	452.2186541555142	40.722	0.86559	40.722	40.334	41.199	0					106	31	4	0	0	0	0.40256	2	8771	8721;8771		10.899	10.899	1	2772900			22137	7968	12320	12321	28343;28344	28344					-0.028657981785727316
LDYEELPELSF	11	Unmodified	_LDYEELPELSF_					0	0	0		PCDHB11|p.V349Cfs*21|1|0.22|ENSG00000197479|chr5:141200817-141200818|-/T|frameshift_variant;ENSG00000197479|ENST00000354757|PCDHB11	PCDHB11|p.V349Cfs*21|1|0.22|ENSG00000197479|chr5:141200817-141200818|-/T|frameshift_variant	PCDHB11|p.V349Cfs*21|1|0.22|ENSG00000197479|chr5:141200817-141200818|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2187805175781	3	452.218614	1353.63401	0.37614	0.0001701	-0.19027	-8.6045E-05	0.18586	8.405E-05	452.21855192155164	40.353	0.95394	40.445	40.051	41.005	0.09267					108	34	5	0	0	0	0.44713	1	8625	8625		5.0475	0.3316	1	3302400			22138	7968	12320	12321	28345	28345					-0.028657981785727316
LDYEELPELSF	11	Unmodified	_LDYEELPELSF_					0	0	0		PCDHB11|p.V349Cfs*21|1|0.22|ENSG00000197479|chr5:141200817-141200818|-/T|frameshift_variant;ENSG00000197479|ENST00000354757|PCDHB11	PCDHB11|p.V349Cfs*21|1|0.22|ENSG00000197479|chr5:141200817-141200818|-/T|frameshift_variant	PCDHB11|p.V349Cfs*21|1|0.22|ENSG00000197479|chr5:141200817-141200818|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.21868896484375	3	452.218614	1353.63401	0.32132	0.00014531	-0.10347	-4.679E-05	0.21785	9.8518E-05	452.21857076681346	40.346	0.742	40.445	40.118	40.86	0.099403					97	26	5	0	0	0	0.44713	1	8605	8605		5.0475	0.3316	1	3364900			22139	7968	12320	12321	28346	28346					-0.028657981785727316
LDYEELPELSF	11	Unmodified	_LDYEELPELSF_					0	0	0		PCDHB11|p.V349Cfs*21|1|0.22|ENSG00000197479|chr5:141200817-141200818|-/T|frameshift_variant;ENSG00000197479|ENST00000354757|PCDHB11	PCDHB11|p.V349Cfs*21|1|0.22|ENSG00000197479|chr5:141200817-141200818|-/T|frameshift_variant	PCDHB11|p.V349Cfs*21|1|0.22|ENSG00000197479|chr5:141200817-141200818|-/T|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	452.218614	1353.63401	0.37614	0.0001701	-0.19027	-8.6045E-05	0.18586	8.405E-05	452.21855192155164	40.353	0.95394	40.445	40.051	41.005	0.09267	-0.092157	-0.00016776	NaN	10.899	108	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3302400			22140	7968	12320	12321							-0.028657981785727316
LDYMIWIK	8	Unmodified	_LDYMIWIK_					0	0	0		ENST00000454177.5_1_3:43341300-43344825:+|nuORF	ENST00000454177.5_1_3:43341300-43344825:+|nuORF	ENST00000454177.5_1_3:43341300-43344825:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7743530273438	2	541.291171	1080.56779	0.27741	0.00015016	0.3154	0.00017072	0.59281	0.00032088	541.290998988418	18.974	0.32408	18.974	18.71	19.034	0					16	11	2	0	0	0	0.34408	1	2016	2016		2.3027	0	1	37952			22141	10678	12321	12322	28347	28347					0.030727592363291478
LDYMIWIK	8	Unmodified	_LDYMIWIK_					0	0	0		ENST00000454177.5_1_3:43341300-43344825:+|nuORF	ENST00000454177.5_1_3:43341300-43344825:+|nuORF	ENST00000454177.5_1_3:43341300-43344825:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.291171	1080.56779	0.30874	0.00016712	-0.51128	-0.00027675	-0.20254	-0.00010963	541.2907225096035	18.985	0.31385	18.926	18.763	19.077	-0.058174	-0.023806	-0.00053641	NaN	5.2307	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41326			22142	10678	12321	12322							0.030727592363291478
LDYMKDEF	8	Unmodified	_LDYMKDEF_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7693481445312	2	530.736425	1059.4583	0.77286	0.00041018	-2.4136	-0.001281	-1.6407	-0.00087079	530.7350685237082	47.446	0.6909	47.446	46.992	47.682	0					35	24	2	0	0	0	0.34337	1	10825	10825		5.2307	0	1	277520			22143	4644	12322	12323	28348	28348					-0.06905291173643491
LDYNKDGTL	9	Unmodified	_LDYNKDGTL_					0	0	0		nc|ENSG00000085491|Q6NUK1-2|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	nc|ENSG00000085491|Q6NUK1-2|SLC25A24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.75732421875	2	519.758746	1037.50294	0.26538	0.00013794	-1.5567	-0.00080911	-1.2913	-0.00067117	520.2602058685276	82.05	0.77052	82.119	81.931	82.701	0.068993					50	31	2	0	0	0	0.19747	2	21411	21411;21447		24.021	5.8856	1	605100			22144	12599	12323	12324	28349;28350	28349					-0.014311440359506378
LDYNYLLF	8	Unmodified	_LDYNYLLF_					0	0	0			REV__nc|ENSG00000116906|O15228-2|GNPAT	REV__nc|ENSG00000116906|O15228-2|GNPAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7618408203125	2	530.771126	1059.5277	0.57805	0.00030681	0.50095	0.00026589	1.079	0.0005727	530.771338712543	89.231	0.66838	89.23	88.953	89.621	-0.00080872					46	34	2	0	0	0	0.41097	1	23673	23673		18.135	0	1	261550	+		22145	14947	12324	12325	28351	28351					0.00031535837410956447
LDYSDVDSFT	10	Unmodified	_LDYSDVDSFT_					0	0	0		ENSG00000178591|ENST00000382410|DEFB125	ENSG00000178591|ENST00000382410|DEFB125	ENSG00000178591|ENST00000382410|DEFB125	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3011474609375	2	581.250951	1160.48735	0.20359	0.00011833	3.1175	0.0018121	3.3211	0.0019304	581.2528238112201	69.952	0.64645	69.952	69.511	70.157	0					55	23	3	0	0	0	0.28434	1	17691	17691		25.399	4.9457	1	425250			22146	7063	12325	12326	28352	28352					-0.08647475343650513
LDYSDVDSFT	10	Unmodified	_LDYSDVDSFT_					0	0	0		ENSG00000178591|ENST00000382410|DEFB125	ENSG00000178591|ENST00000382410|DEFB125	ENSG00000178591|ENST00000382410|DEFB125	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.301025390625	2	581.250951	1160.48735	0.1927	0.00011201	3.0698	0.0017843	3.2625	0.0018964	581.2528397257988	69.856	0.66283	69.922	69.579	70.242	0.06604					59	23	3	0	0	0	0.28434	1	17680	17680		25.399	4.9457	1	398820			22147	7063	12325	12326	28353	28353					-0.08647475343650513
LDYSDVDSFT	10	Unmodified	_LDYSDVDSFT_					0	0	0		ENSG00000178591|ENST00000382410|DEFB125	ENSG00000178591|ENST00000382410|DEFB125	ENSG00000178591|ENST00000382410|DEFB125	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.30126953125	2	581.250951	1160.48735	0.26808	0.00015582	3.1678	0.0018413	3.4359	0.0019971	581.2527874605245	69.939	0.65659	69.916	69.591	70.248	-0.022079					54	23	3	0	0	0	0.25875	1	17683	17683		25.399	9.5521	1	477600			22148	7063	12325	12326	28354	28354					-0.08647475343650513
LDYSYKCT	8	Unmodified	_LDYSYKCT_					0	0	0		ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7237243652344	2	496.723318	991.432083	0.77034	0.00038265	0.30535	0.00015168	1.0757	0.00053432	496.7234306044945	77.745	0.57113	77.8	77.541	78.112	0.055412					49	20	3	0	0	0	0.42077	1	20079	20079		15.847	1.2655	1	556510			22149	5274	12326	12327	28355	28355					-0.06397560345112652
LDYSYKCT	8	Unmodified	_LDYSYKCT_					0	0	0		ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	496.723318	991.432083	0.77034	0.00038265	0.30535	0.00015168	1.0757	0.00053432	496.7234306044945	77.745	0.57113	77.8	77.541	78.112	0.055412	0.0087642	8.9672E-05	NaN	15.847	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	556510			22150	5274	12326	12327							-0.06397560345112652
LDYSYKCT	8	Unmodified	_LDYSYKCT_					0	0	0		ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	496.723318	991.432083	0.86622	0.00043027	0.13864	6.8865E-05	1.0049	0.00049914	496.72332029995835	77.836	0.78451	77.805	77.542	78.326	-0.031334	0.013395	-7.595E-05	NaN	15.847	57	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	542930			22151	5274	12326	12327							-0.06397560345112652
LDYTTWPSYSF	11	Unmodified	_LDYTTWPSYSF_					0	0	0		SPAG5|p.T656Pfs*28|1|0.06|ENSG00000076382|chr17:28585203-28585204|-/AAGATGG|frameshift_variant	SPAG5|p.T656Pfs*28|1|0.06|ENSG00000076382|chr17:28585203-28585204|-/AAGATGG|frameshift_variant	SPAG5|p.T656Pfs*28|1|0.06|ENSG00000076382|chr17:28585203-28585204|-/AAGATGG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.3114013671875	3	460.543321	1378.60813	0.21002	9.6725E-05	0.11176	5.147E-05	0.32178	0.0001482	460.54349117240946	36.616	0.22363	36.704	36.566	36.79	0.087406					10	7	2	0	0	0	0.3333	1	7455	7455		0.45452	0.39011	1	79028			22152	23379	12327	12328	28356	28356					-0.06602647630211322
LEAERLRSHF	10	Unmodified	_LEAERLRSHF_					0	0	0		ENST00000370544.9_1_1:87794853-87794913:+|nuORF	ENST00000370544.9_1_1:87794853-87794913:+|nuORF	ENST00000370544.9_1_1:87794853-87794913:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.5898132324219	3	419.894799	1256.66257	-0.12606	-5.293E-05	-3.3978	-0.0014267	-3.5238	-0.0014796	419.89363219389344	26.013	0.079523	25.974	25.931	26.01	-0.038671					4	2	2	0	0	0	0.3179	1	4230	4230		8.9762	3.1928	1	22698			22153	9802	12328	12329	28357	28357					0.04450409031892377
LEAFNVKRGA	10	Unmodified	_LEAFNVKRGA_					0	0	0			REV__CC2D1B|p.D819Efs*10|1|0.26|ENSG00000154222|chr1:52353633-52353639|CCTTCCA/-|frameshift_variant	REV__CC2D1B|p.D819Efs*10|1|0.26|ENSG00000154222|chr1:52353633-52353639|CCTTCCA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.30224609375	2	552.811648	1103.60874	0.17867	9.8772E-05	3.3355	0.0018439	3.5142	0.0019427	553.3138195336655	29.203	0.24572	29.216	29.113	29.359	0.013475					15	8	3	0	0	0	0.40106	1	5195	5195		3.2813	0.70383	1	103040	+		22154	13138	12329	12330	28358	28358					0.061082366001983246
LEAIIRLWPL	10	Unmodified	_LEAIIRLWPL_					0	0	0		nc|ENSG00000278259|Q96H55-4|MYO19;ENSG00000278259|ENST00000614623|MYO19	nc|ENSG00000278259|Q96H55-4|MYO19	nc|ENSG00000278259|Q96H55-4|MYO19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.58880615234375	3	408.588536	1222.74378	-0.125	-5.1073E-05	0.93979	0.00038399	0.81479	0.00033291	408.58878870949115	39.192	0.66821	39.285	39.052	39.72	0.09267					58	23	4	0	0	0	0.38284	1	8243	8243		6.6304	6.6304	1	482890			22155	8742	12330	12331	28359	28359					0.1413171674194018
LEAIIRLWPL	10	Unmodified	_LEAIIRLWPL_					0	0	0		nc|ENSG00000278259|Q96H55-4|MYO19;ENSG00000278259|ENST00000614623|MYO19	nc|ENSG00000278259|Q96H55-4|MYO19	nc|ENSG00000278259|Q96H55-4|MYO19	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	408.588536	1222.74378	-0.43676	-0.00017846	1.0971	0.00044824	0.66029	0.00026979	408.58887590868864	38.951	1.26	38.951	38.571	39.831	0	-0.16696	5.7013E-05	NaN	6.6304	92	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443610			22156	8742	12330	12331							0.1413171674194018
LEAINELIRF	10	Unmodified	_LEAINELIRF_					0	0	0		ENSG00000100219|ENST00000344347|XBP1	ENSG00000100219|ENST00000344347|XBP1	ENSG00000100219|ENST00000344347|XBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.8899230957031	3	406.567801	1216.68157	0.13768	5.5978E-05	-0.73441	-0.00029859	-0.59673	-0.00024261	406.5673754969614	43.229	0.41417	43.307	43.127	43.541	0.077518					38	14	4	0	0	0	0.29589	1	9490	9490		10.899	6.183	1	457330			22157	1546	12331	12332	28360	28360					0.08189945602930493
LEAINELIRF	10	Unmodified	_LEAINELIRF_					0	0	0		ENSG00000100219|ENST00000344347|XBP1	ENSG00000100219|ENST00000344347|XBP1	ENSG00000100219|ENST00000344347|XBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.88995361328125	3	406.567801	1216.68157	-0.066193	-2.6912E-05	-0.5278	-0.00021459	-0.59399	-0.0002415	406.56760896104794	43.223	0.48809	43.307	43.061	43.549	0.083996					37	17	3	0	0	0	0.29589	1	9472	9472		10.899	3.8619	1	400610			22158	1546	12331	12332	28361	28361					0.08189945602930493
LEAKMRIIE	9	Unmodified	_LEAKMRIIE_					0	0	0		ENSG00000162994|ENST00000401408|CLHC1	ENSG00000162994|ENST00000401408|CLHC1	ENSG00000162994|ENST00000401408|CLHC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.8240966796875	2	551.818084	1101.62162	0.42737	0.00023583	-0.23532	-0.00012986	0.19205	0.00010598	551.8162788401265	53.235	0.87845	53.225	52.837	53.715	-0.0096054					93	32	5	0	0	0	0.18803	1	12495	12495		25.399	0	1	2435000			22159	5638	12332	12333	28362	28362					0.07486931668086072
LEALQRLTV	9	Unmodified	_LEALQRLTV_					0	0	0			REV__nc|ENSG00000144452|Q86UK0-2|ABCA12	REV__nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.8164672851562	2	521.816399	1041.61824	0.51762	0.0002701	-0.68723	-0.00035861	-0.16961	-8.8503E-05	521.8159477320646	45.366	0.47904	45.431	45.224	45.703	0.065048					31	17	2	0	0	0	0.074331	1	10129	10129		52.268	0	1	497780	+		22160	16235	12333	12334	28363	28363					0.0991000488568261
LEALSPRLLK	10	Unmodified	_LEALSPRLLK_					0	0	0			REV__nc|ENSG00000064651|P55011-3|SLC12A2	REV__nc|ENSG00000064651|P55011-3|SLC12A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8224487304688	2	570.360973	1138.70739	0.21591	0.00012315	-0.11817	-6.7402E-05	0.097738	5.5746E-05	570.3610003821103	43.212	0.62232	43.296	43.035	43.657	0.083996					33	22	2	0	0	0	0.31889	1	9565	9565		6.2058	0.47393	1	436500	+		22161	13646	12334	12335	28364	28364					0.14358839845203875
LEAMDLEV	8	Unmodified	_LEAMDLEV_					0	0	0		nc|ENSG00000151948|Q96MS3-2|GLT1D1;ENSG00000151948|ENST00000442111|GLT1D1	nc|ENSG00000151948|Q96MS3-2|GLT1D1	nc|ENSG00000151948|Q96MS3-2|GLT1D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.22564697265625	2	460.225694	918.436834	0.39217	0.00018048	-0.088923	-4.0925E-05	0.30324	0.00013956	460.22552413303964	54.492	1.0566	54.476	53.949	55.006	-0.015923					77	37	3	0	0	0	0.25425	1	12906	12906		36.044	5.8194	1	979290			22162	4993	12335	12336	28365	28365					-0.02564676202348437
LEANGRKAML	10	Unmodified	_LEANGRKAML_					0	0	0		nc|ENSG00000099377|Q9H2F3-2|HSD3B7	nc|ENSG00000099377|Q9H2F3-2|HSD3B7	nc|ENSG00000099377|Q9H2F3-2|HSD3B7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8062133789062	2	551.805508	1101.59646	0.58453	0.00032255	0.63284	0.0003492	1.2174	0.00067175	551.8057047026017	64.42	0.93435	64.42	64.053	64.988	0					81	34	3	0	0	0	0.24105	1	16030	16030		27.629	2.2295	1	1109900			22163	12609	12336	12337	28366	28366					0.04972876865485887
LEAPDDSAGLS	11	Unmodified	_LEAPDDSAGLS_					0	0	0			REV__ENSG00000157927|ENST00000399583|RADIL	REV__ENSG00000157927|ENST00000399583|RADIL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7391967773438	2	537.751118	1073.48768	0.51698	0.00027801	-0.53619	-0.00028834	-0.019212	-1.0331E-05	537.7508289773341	21.48	0.56721	21.43	21.207	21.774	-0.049376					27	19	2	0	0	0	0.46475	1	2904	2904		2.7352	0.89096	1	75999	+		22164	16799	12337	12338	28367	28367					-0.046120556238065546
LEAPDDSAGLS	11	Unmodified	_LEAPDDSAGLS_					0	0	0			REV__ENSG00000157927|ENST00000399583|RADIL	REV__ENSG00000157927|ENST00000399583|RADIL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	537.751118	1073.48768	0.52717	0.00028348	-0.7365	-0.00039605	-0.20933	-0.00011257	537.7506579220789	21.456	0.45222	21.456	21.228	21.68	0	0.012759	-0.0001384	NaN	2.7352	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47145	+		22165	16799	12337	12338							-0.046120556238065546
LEAPDDSAGLS	11	Unmodified	_LEAPDDSAGLS_					0	0	0			REV__ENSG00000157927|ENST00000399583|RADIL	REV__ENSG00000157927|ENST00000399583|RADIL	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	537.751118	1073.48768	0.51698	0.00027801	-0.53619	-0.00028834	-0.019212	-1.0331E-05	537.7508289773341	21.48	0.56721	21.43	21.207	21.774	-0.049376	-0.012759	7.7027E-05	NaN	2.7352	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75999	+		22166	16799	12337	12338							-0.046120556238065546
LEAPRTQR	8	Unmodified	_LEAPRTQR_					0	0	0		ENST00000504371.1_1_4:87812740-87813393:-|nuORF;ENST00000295898.7_2_4:87812642-87813393:-|nuORF	ENST00000504371.1_1_4:87812740-87813393:-|nuORF	ENST00000504371.1_1_4:87812740-87813393:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.77484130859375	2	485.775065	969.535577	0.052075	2.5297E-05	-0.46752	-0.00022711	-0.41544	-0.00020181	485.7749195960147	18.818	1.2329	18.818	18.535	19.768	0					117	43	5	0	0	0	0.44389	1	2119	2119		7.9102	0.62092	1	2132500			22167	9177	12338	12339	28368	28368					0.04959107877562019
LEAPSVATAFC	11	Unmodified	_LEAPSVATAFC_					0	0	0			REV__ENSG00000186765|ENST00000417245|FSCN2	REV__ENSG00000186765|ENST00000417245|FSCN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.7566528320312	2	554.7708	1107.52705	0.1357	7.528E-05	3.1774	0.0017627	3.3131	0.001838	554.7723411905587	18.41	0.51577	18.293	17.985	18.501	-0.11739					27	17	2	0	0	0	0.33318	1	1850	1850		1.3295	0.5359	1	42967	+		22168	18465	12339	12340	28369	28369					-0.02241626873910718
LEAPSVATAFC	11	Unmodified	_LEAPSVATAFC_					0	0	0			REV__ENSG00000186765|ENST00000417245|FSCN2	REV__ENSG00000186765|ENST00000417245|FSCN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	554.7708	1107.52705	0.20104	0.00011153	3.6649	0.0020332	3.8659	0.0021447	554.7725253458999	18.223	0.37193	18.223	17.991	18.363	0	-0.061134	0.00015874	NaN	1.3295	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51705	+		22169	18465	12339	12340							-0.02241626873910718
LEAPSVATAFC	11	Unmodified	_LEAPSVATAFC_					0	0	0			REV__ENSG00000186765|ENST00000417245|FSCN2	REV__ENSG00000186765|ENST00000417245|FSCN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	554.7708	1107.52705	-0.050317	-2.7914E-05	3.5478	0.0019682	3.4975	0.0019403	554.7727686450536	18.395	0.33828	18.336	18.145	18.483	-0.058174	0.052303	2.8844E-05	NaN	1.3295	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58361	+		22170	18465	12339	12340							-0.02241626873910718
LEARLKKK	8	Unmodified	_LEARLKKK_					0	0	0		ENST00000517521.5_1_8:30240060-30242719:-|nuORF	ENST00000517521.5_1_8:30240060-30242719:-|nuORF	ENST00000517521.5_1_8:30240060-30242719:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7801513671875	2	493.329476	984.6444	0.27661	0.00013646	0.24661	0.00012166	0.52321	0.00025812	493.32954596590173	26.554	0.40861	26.554	26.35	26.759	0					23	13	2	0	0	0	0.34294	1	4372	4372		7.2892	0	1	110940			22171	11436	12340	12341	28370	28370					0.1514631884784876
LEARLKKK	8	Unmodified	_LEARLKKK_					0	0	0		ENST00000517521.5_1_8:30240060-30242719:-|nuORF	ENST00000517521.5_1_8:30240060-30242719:-|nuORF	ENST00000517521.5_1_8:30240060-30242719:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7802734375	2	493.329476	984.6444	0.30741	0.00015165	-0.062474	-3.082E-05	0.24493	0.00012083	493.32943824837116	26.581	0.42834	26.542	26.342	26.771	-0.038671					23	14	2	0	0	0	0.33661	1	4426	4426		19.257	4.4187	1	112160			22172	11436	12340	12341	28371	28371					0.1514631884784876
LEARLKKK	8	Unmodified	_LEARLKKK_					0	0	0		ENST00000517521.5_1_8:30240060-30242719:-|nuORF	ENST00000517521.5_1_8:30240060-30242719:-|nuORF	ENST00000517521.5_1_8:30240060-30242719:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7801208496094	2	493.329476	984.6444	0.52881	0.00026088	0.27955	0.00013791	0.80836	0.00039879	493.32960037101003	26.668	0.37178	26.646	26.439	26.811	-0.022238					23	12	3	0	0	0	0.34226	1	4393	4393		6.2058	0	1	119610			22173	11436	12340	12341	28372	28372					0.1514631884784876
LEAVGIEEKF	10	Unmodified	_LEAVGIEEKF_					0	0	0			REV__nc|ENSG00000114650|Q12770-3|SCAP	REV__nc|ENSG00000114650|Q12770-3|SCAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.279541015625	2	567.805697	1133.59684	0.3101	0.00017608	1.4388	0.00081693	1.7489	0.00099301	567.8063432196043	70.455	0.39436	70.43	70.245	70.64	-0.024872					24	13	3	0	0	0	0.28569	1	17887	17887		26.268	13.737	1	130270	+		22174	14841	12341	12342	28373	28373					0.035385750663408544
LECPSAEV	8	Unmodified	_LECPSAEV_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.73193359375	2	424.196936	846.379319	-0.078755	-3.3408E-05	-1.183	-0.0005018	-1.2617	-0.00053521	424.19639388809213	67.329	0.40385	67.329	67.106	67.51	0					19	13	2	0	0	0	0.34131	1	16927	16927		12.532	0	1	96531			22175	3159;2560	12342	12343	28374	28374					-0.05001518407925687
LEDNLMSLF	9	Unmodified	_LEDNLMSLF_					0	0	0		ENST00000607520.1_1_15:83423338-83423473:+|nuORF	ENST00000607520.1_1_15:83423338-83423473:+|nuORF	ENST00000607520.1_1_15:83423338-83423473:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8427734375	2	541.26535	1080.51615	0.45992	0.00024894	0.00067255	3.6403E-07	0.46059	0.0002493	541.2645064671129	66.991	0.8922	67.075	66.467	67.36	0.083832					44	31	2	0	0	0	0.24913	1	16814	16814		4.3292	0	1	90761			22176	12312	12343	12344	28375	28375					-0.020890292482363293
LEDPNISASLI	11	Unmodified	_LEDPNISASLI_					0	0	0		ENST00000461666.1_1_3:108303828-108308222:-|nuORF;ENST00000487834.5_1_3:108281971-108308222:-|nuORF;ENSG00000163507|ENST00000295746|CIP2A	ENST00000461666.1_1_3:108303828-108308222:-|nuORF	ENST00000461666.1_1_3:108303828-108308222:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8137817382812	2	586.313886	1170.61322	0.4757	0.00027891	1.403	0.00082262	1.8787	0.0011015	586.3145561861562	93.623	0.49066	93.623	93.327	93.818	-0.00050354					55	37	2	0	0	0	0.32951	1	24887	24887		2.7352	0	1	177510			22177	5689	12344	12345	28376	28376					0.03473656232426947
LEDQNREF	8	Unmodified	_LEDQNREF_					0	0	0		ENSG00000242515|ENST00000344644|UGT1A10	ENSG00000242515|ENST00000344644|UGT1A10	ENSG00000242515|ENST00000344644|UGT1A10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.855224609375	2	525.74617	1049.47779	0.5352	0.00028138	-1.7034	-0.00089553	-1.1682	-0.00061416	525.7451055627029	70.354	0.71973	70.354	70.103	70.823	0					56	25	4	0	0	0	0.31617	1	17827	17827		20.454	0	1	575340			22178	8548	12345	12346	28377	28377					-0.04497198838521399
LEDSPEENLF	10	Unmodified	_LEDSPEENLF_					0	0	0		nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A;ENSG00000198826|ENST00000361627|ARHGAP11A	nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.7722778320312	2	596.772051	1191.52955	0.64836	0.00038692	-0.16837	-0.00010048	0.47999	0.00028644	596.7720657151839	75.031	0.69037	75.031	74.731	75.421	0					91	24	5	0	0	0	0.28434	1	19237	19237		25.399	25.399	1	4490400			22179	8136	12346	12347	28378	28378					-0.05855499935296393
LEEADLYELL	10	Unmodified	_LEEADLYELL_					0	0	0			REV__ENST00000464572.5_1_13:37614523-37618301:-|nuORF	REV__ENST00000464572.5_1_13:37614523-37618301:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.55450439453125	3	403.207938	1206.60199	-0.41537	-0.00016748	1.2211	0.00049234	0.80569	0.00032486	403.2083582558348	13.959	0.28792	13.959	13.767	14.055	0					17	9	3	0	0	0	0.39782	1	547	547		3.8763	0.28927	1	45520	+		22180	14329	12347	12348	28379	28379					0.006948341382894796
LEEADRQF	8	Unmodified	_LEEADRQF_					0	0	0			REV__SPTAN1|p.W2169Cfs*90|1|0.11|ENSG00000197694|chr9:128626632-128626632|G/-|frameshift_variant	REV__SPTAN1|p.W2169Cfs*90|1|0.11|ENSG00000197694|chr9:128626632-128626632|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.5930480957031	2	504.243264	1006.47197	0.35025	0.00017661	-1.0711	-0.00054007	-0.72081	-0.00036347	504.24242268825446	58.275	0.44348	58.361	58.162	58.606	0.085621					38	15	3	0	0	0	0.34092	1	14182	14182		4.756	2.1785	1	336790	+		22181	18757	12348	12349	28380	28380					-0.031002973501813358
LEEEESSGQA	10	Unmodified	_LEEEESSGQA_					0	0	0			REV__ENSG00000214562|ENST00000381697|NUTM2D	REV__ENSG00000214562|ENST00000381697|NUTM2D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3306274414062	2	539.730383	1077.44621	0.14938	8.0627E-05	-0.90992	-0.00049111	-0.76053	-0.00041048	539.729869589279	81.397	0.44884	81.466	81.309	81.758	0.068993					36	20	2	0	0	0	0.31143	1	21172	21172		17.113	1.2657	1	165480	+		22182	18339	12349	12350	28381	28381					-0.08941236383111573
LEEELKTFKRI	11	Unmodified	_LEEELKTFKRI_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.92047119140625	3	469.273165	1404.79767	-0.19174	-8.9979E-05	0.33951	0.00015932	0.14777	6.9343E-05	469.6077756632499	23.022	0.48751	23.022	22.736	23.224	0					26	16	2	0	0	0	0.33336	1	3348	3348		1.1098	0.096179	1	70172			22183	557	12350	12351	28382	28382					0.11145844383008807
LEEELKTFKRI	11	Unmodified	_LEEELKTFKRI_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.9205322265625	3	469.273165	1404.79767	0.16249	7.625E-05	-0.35184	-0.00016511	-0.18935	-8.8859E-05	469.6074701036632	23.197	0.57046	23.152	22.873	23.444	-0.044867					25	20	2	0	0	0	0.33336	1	3362	3362		1.1098	0.096179	1	70485			22184	557	12350	12351	28383	28383					0.11145844383008807
LEEELKTFKRI	11	Unmodified	_LEEELKTFKRI_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	469.273165	1404.79767	-0.090745	-4.2584E-05	0.13868	6.508E-05	0.047937	2.2496E-05	469.27321990198203	23.118	0.42226	23.031	22.82	23.242	-0.087608	-0.037366	4.2414E-05	NaN	1.1098	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80362			22185	557	12350	12351							0.11145844383008807
LEEESFKMK	9	Unmodified	_LEEESFKMK_					0	0	0		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.7857055664062	2	570.783907	1139.55326	0.051643	2.9477E-05	1.0782	0.00061542	1.1298	0.00064489	570.7842591257881	18.76	0.7625	18.76	18.563	19.325	0					43	26	2	0	0	0	0.34809	1	2049	2049		1.6526	0	1	104100			22186	7579	12351	12352	28384	28384					-0.010933577024388796
LEEGKRPEK	9	Unmodified	_LEEGKRPEK_					0	0	0			REV__ENSG00000106624|ENST00000223357|AEBP1	REV__ENSG00000106624|ENST00000223357|AEBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3011474609375	2	543.301113	1084.58767	0.35642	0.00019364	-0.12055	-6.5495E-05	0.23587	0.00012815	543.3011715990201	16.42	0.44492	16.42	16.214	16.659	0					36	15	4	0	0	0	0.3208	1	1371	1371		5.7319	0.43497	1	94423	+		22187	14529	12352	12353	28385	28385					0.04876226500641678
LEEHKAVIL	9	Unmodified	_LEEHKAVIL_					0	0	0		MYO5C|p.T1715Hfs*13|1|0.04|ENSG00000128833|chr15:52193988-52193988|T/-|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;ENST00000559434.1_1_15:52529600-52534394:-|nuORF;ENST00000560809.5_1_15:52521487-52536666:-|nuORF	MYO5C|p.T1715Hfs*13|1|0.04|ENSG00000128833|chr15:52193988-52193988|T/-|frameshift_variant	MYO5C|p.T1715Hfs*13|1|0.04|ENSG00000128833|chr15:52193988-52193988|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3099975585938	2	526.310949	1050.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.579	1	90.579	90.079	91.079	0.0003891								0	0	0	0.25499	1	24004	24004		4.756	0	1				22188	3394	12353	12354	28386	28386					0.08406602511445271
LEEIFFFLI	9	Unmodified	_LEEIFFFLI_					0	0	0			REV__ENST00000486787.1_1_2:232160870-232209803:+|nuORF	REV__ENST00000486787.1_1_2:232160870-232209803:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135375976562	2	585.825901	1169.63725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.021	1	95.104	94.604	95.604	0.082779								0	0	0	0.25352	1	25366	25366		5.2307	1.2863	1		+		22189	21556	12354	12355	28387	28387					0.05921541456768864
LEEILFLFT	9	Unmodified	_LEEILFLFT_					0	0	0			REV__ENSG00000085465|ENST00000369732|OVGP1	REV__ENSG00000085465|ENST00000369732|OVGP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8130493164062	2	562.815533	1123.61651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.447	1	93.534	93.034	94.034	0.08667								0	0	0	0.25631	1	24888	24888		4.3292	0	1		+		22190	13960	12355	12356	28388	28388					0.059649510770896086
LEEILNSIPP	10	Unmodified	_LEEILNSIPP_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;SMC4|p.N1243Mfs*5|1|0.2|ENSG00000113810|chr3:160433665-160433665|A/-|frameshift_variant;ENSG00000113810|ENST00000357388|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.81298828125	2	562.813522	1123.61249	0.177	9.9616E-05	-1.4436	-0.00081249	-1.2666	-0.00071287	562.8129747465075	93.294	0.57419	93.294	92.941	93.515	0					105	50	3	0	0	0	0.40262	1	24853	24853		2.9952	0.26005	1	141490			22191	2532	12356	12357	28389	28389					0.05562861583371159
LEELFIEIF	9	Unmodified	_LEELFIEIF_					0	0	0			REV__RRP1|p.E252*|1|0.08|ENSG00000160214|chr21:43798041-43798042|-/T|frameshift_variant	REV__RRP1|p.E252*|1|0.08|ENSG00000160214|chr21:43798041-43798042|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.82373046875	2	576.81299	1151.61143	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.981	1	62.973	62.473	63.473	-0.0085526								0	0	0	0.21726	1	15561	15561		16.942	3.0362	1		+		22192	16888	12357	12358	28390	28390					0.041686472144419895
LEELQRLHSQV	11	Unmodified	_LEELQRLHSQV_					0	0	0		ENST00000550197.1_1_12:120512327-120527926:+|nuORF;nc|ENSG00000135127|Q6ZP65-2|BICDL1;ENSG00000135127|ENST00000548673|BICDL1	ENST00000550197.1_1_12:120512327-120527926:+|nuORF	ENST00000550197.1_1_12:120512327-120527926:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2489929199219	3	451.249131	1350.72556	0.27398	0.00012363	-0.27638	-0.00012472	-0.0024002	-1.0831E-06	451.24897230886563	36.828	0.70583	36.916	36.626	37.332	0.087406					52	25	3	0	0	0	0.39244	1	7545	7545		12.228	6.7043	1	489860			22193	3848	12358	12359	28391	28391					0.06422930029270901
LEENFNVSFFD	11	Unmodified	_LEENFNVSFFD_					0	0	0			REV__ENSG00000197121|ENST00000354764|PGAP1	REV__ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2062683105469	3	454.206709	1359.5983	0.23029	0.0001046	-0.47281	-0.00021475	-0.24252	-0.00011015	454.2064764154684	19.964	0.66462	19.848	19.461	20.126	-0.11592					55	22	3	0	0	0	0.48173	1	2445	2445		0.50596	0.051438	1	52988	+		22194	18711	12359	12360	28392	28392					-0.06711835635564967
LEEPNQMKK	9	Unmodified	_LEEPNQMKK_					0	0	0		ENST00000340080.8_1_7:7636044-7645605:+|nuORF	ENST00000340080.8_1_7:7636044-7645605:+|nuORF	ENST00000340080.8_1_7:7636044-7645605:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.789306640625	2	558.789524	1115.56449	0.14213	7.9423E-05	-0.0036591	-2.0446E-06	0.13848	7.7379E-05	558.7895046646344	17.383	1.2137	17.266	16.937	18.151	-0.11739					112	42	4	0	0	0	0.34809	1	1735	1735		1.6526	0.17072	1	1174800			22195	9513	12360	12361	28393	28393					0.011334643916825371
LEEQNELIIK	10	Unmodified	_LEEQNELIIK_					0	0	0		ENST00000592611.5_1_18:34415331-34809581:+|nuORF;ENST00000590617.5_1_18:34415331-34802187:+|nuORF;nc|ENSG00000150477|Q86T90-2|KIAA1328;ENSG00000150477|ENST00000280020|KIAA1328	ENST00000592611.5_1_18:34415331-34809581:+|nuORF	ENST00000592611.5_1_18:34415331-34809581:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2314758300781	3	410.230966	1227.67107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.26	1	103.27	102.77	103.77	0.0082703								0	0	0	0.37541	1	27449	27449		4.1166	0.52395	1				22196	4912	12361	12362	28394	28394					0.06633918157854168
LEERPLMV	8	Unmodified	_LEERPLMV_					0	0	0			REV__nc|ENSG00000135636|O75923-15|DYSF	REV__nc|ENSG00000135636|O75923-15|DYSF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7801208496094	2	493.770603	985.526652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.439	1	26.4	25.9	26.9	-0.038671								0	0	0	0.34734	1	4356	4356		15.847	1.2655	1		+		22197	15753	12362	12363	28395	28395					0.033309981968841385
LEESHDDRH	9	Unmodified	_LEESHDDRH_					0	0	0			REV__ENSG00000072315|ENST00000262839|TRPC5	REV__ENSG00000072315|ENST00000262839|TRPC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.2495727539062	2	569.249609	1136.48466	0.34253	0.00019499	-0.64118	-0.00036499	-0.29864	-0.00017	569.249430486525	21.189	0.71833	21.189	20.883	21.601	0					64	24	4	0	0	0	0.28674	2	2778	2778;2829		10.824	0	1	215440	+		22198	13759	12363	12364	28396;28397	28396					-0.07811885957949016
LEESHDDRH	9	Unmodified	_LEESHDDRH_					0	0	0			REV__ENSG00000072315|ENST00000262839|TRPC5	REV__ENSG00000072315|ENST00000262839|TRPC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.2493896484375	2	569.249609	1136.48466	0.55666	0.00031688	-0.6932	-0.00039461	-0.13654	-7.7728E-05	569.2492724094706	21.33	0.59122	21.22	21.008	21.599	-0.10949					50	20	4	0	0	0	0.33508	2	2781	2781;2833		3.5965	0.31518	1	297380	+		22199	13759	12363	12364	28398;28399	28398					-0.07811885957949016
LEESHDDRH	9	Unmodified	_LEESHDDRH_					0	0	0			REV__ENSG00000072315|ENST00000262839|TRPC5	REV__ENSG00000072315|ENST00000262839|TRPC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.2496337890625	2	569.249609	1136.48466	0.3326	0.00018933	-0.30897	-0.00017588	0.023625	1.3448E-05	569.2494967568499	21.259	0.65327	21.206	20.947	21.6	-0.052912					58	22	3	0	0	0	0.31417	2	2804	2804;2856		6.7232	0	1	241610	+		22200	13759	12363	12364	28400;28401	28400					-0.07811885957949016
LEESHDDRH	9	Unmodified	_LEESHDDRH_					0	0	0			REV__ENSG00000072315|ENST00000262839|TRPC5	REV__ENSG00000072315|ENST00000262839|TRPC5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	569.249609	1136.48466	0.55666	0.00031688	-0.6932	-0.00039461	-0.13654	-7.7728E-05	569.2492724094706	21.33	0.59122	21.22	21.008	21.599	-0.10949	0.015018	-0.00014644	NaN	10.824	50	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297380	+		22201	13759	12363	12364							-0.07811885957949016
LEETHTIFL	9	Unmodified	_LEETHTIFL_					0	0	0		ENST00000412176.1_1_1:24227963-24228722:-|nuORF	ENST00000412176.1_1_1:24227963-24228722:-|nuORF	ENST00000412176.1_1_1:24227963-24228722:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.79296875	2	551.792589	1101.57063	0.74275	0.00040984	-0.68499	-0.00037797	0.057757	3.187E-05	551.7924731535618	77.702	1.1865	77.702	77.09	78.276	0					116	43	4	0	0	0	0.24581	1	20076	20076		16.942	16.942	1	1246600			22202	10275	12364	12365	28402	28402					0.02390305894869016
LEEVEQLLRDL	11	Unmodified	_LEEVEQLLRDL_					0	0	0		nc|ENSG00000142621|B1AJZ9-3|FHAD1;ENST00000459961.1_1_1:15655730-15656069:+|nuORF;ENST00000472131.5_1_1:15653545-15656069:+|nuORF;ENST00000471347.5_1_1:15654853-15671627:+|nuORF;nc|ENSG00000142621|B1AJZ9-4|FHAD1;nc|ENSG00000142621|B1AJZ9|FHAD1;ENSG00000142621|ENST00000688493|FHAD1	nc|ENSG00000142621|B1AJZ9-3|FHAD1	nc|ENSG00000142621|B1AJZ9-3|FHAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.917724609375	3	452.917158	1355.72965	0.24994	0.0001132	0.39052	0.00017687	0.64045	0.00029007	452.9172976549104	37.149	0.6572	37.236	36.841	37.498	0.08741					54	23	3	0	0	0	0.41892	1	7579	7579		8.7518	0	1	448010			22203	12732	12365	12366	28403	28403					0.06600974732327813
LEEVHGRPF	9	Unmodified	_LEEVHGRPF_					0	0	0			REV__DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant	REV__DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2937622070312	2	542.282723	1082.55089	0.78809	0.00042737	-0.82296	-0.00044628	-0.034876	-1.8913E-05	542.2822260751785	31.937	0.83565	31.98	31.882	32.717	0.042364					46	29	2	0	0	0	0.23784	1	6073	6073		19.257	2.1441	1	443570	+		22204	13305	12366	12367	28404	28404					0.012919746747684258
LEEVQQVRR	9	Unmodified	_LEEVQQVRR_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.8250732421875	2	578.825286	1155.63602	-0.10407	-6.0237E-05	0.021972	1.2718E-05	-0.082095	-4.7519E-05	578.8253576648239	13.577	0.32674	13.51	13.388	13.714	-0.067495					24	11	3	0	0	0	0.33276	1	473	473		3.9444	0	1	94178			22205	3935	12367	12368	28405	28405					0.06442720140557867
LEEVQQVRR	9	Unmodified	_LEEVQQVRR_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	578.825286	1155.63602	-0.073521	-4.2556E-05	-0.059633	-3.4517E-05	-0.13315	-7.7073E-05	578.8253352860056	13.513	0.3447	13.513	13.396	13.74	0	0.0014044	-5.6858E-05	NaN	3.9444	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104450			22206	3935	12367	12368							0.06442720140557867
LEEVRKPEKL	10	Unmodified	_LEEVRKPEKL_					0	0	0			REV__nc|ENSG00000153234|P43354-2|NR4A2;REV__nc|ENSG00000119508|Q92570-3|NR4A3	REV__nc|ENSG00000119508|Q92570-3|NR4A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.8682556152344	3	414.246839	1239.71869	0.12008	4.9744E-05	0.92003	0.00038112	1.0401	0.00043086	414.58177271038977	37.885	0.185	37.885	37.795	37.98	0					9	6	2	0	0	0	0.31969	1	7864	7864		5.7834	0.73591	1	57170	+		22207	16617;15042	12368	12369	28406	28406					0.1084161714873062
LEFFFLSI	8	Unmodified	_LEFFFLSI_					0	0	0			REV__ENST00000481883.1_1_21:47976701-47976983:+|nuORF	REV__ENST00000481883.1_1_21:47976701-47976983:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.77984619140625	2	508.278586	1014.54262	0.28395	0.00014433	4.2611	0.0021658	4.545	0.0023101	508.2823077350554	30.823	1.3589	30.823	30.194	31.553	0					112	48	3	0	0	0	0.4397	1	5715	5715		9.3474	0	1	526740	+		22208	21495	12369	12370	28407	28407					0.03593027705437635
LEFFKKDKL	9	Unmodified	_LEFFKKDKL_					0	0	0		SLFN14|p.S188L|1|0.23|ENSG00000236320|chr17:35557500-35557500|G/A|missense_variant	SLFN14|p.S188L|1|0.23|ENSG00000236320|chr17:35557500-35557500|G/A|missense_variant	SLFN14|p.S188L|1|0.23|ENSG00000236320|chr17:35557500-35557500|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.34228515625	2	584.342249	1166.66995	0.83208	0.00048622	-0.34254	-0.00020016	0.48955	0.00028606	584.3419740450416	56.214	0.83066	56.214	55.992	56.823	0					76	30	4	0	0	0	0.047483	1	13503	13503		53.833	3.8998	1	2674400			22209	23378	12370	12371	28408	28408					0.09327748579607942
LEFKNKYISRR	11	Unmodified	_LEFKNKYISRR_					0	0	0			REV__ENST00000511842.5_1_2:27693746-27712529:-|nuORF	REV__ENST00000511842.5_1_2:27693746-27712529:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.800048828125	3	485.280654	1452.82013	0.59685	0.00028964	2.5531	0.001239	3.15	0.0015286	485.28179642028533	54.751	0.25917	54.751	54.526	54.785	0					12	9	2	0	0	0	0.3331	1	12980	12980		1.0136	0	1	215420	+		22210	15895	12371	12372	28409	28409					0.11183488571259659
LEFVKRGRSG	10	Unmodified	_LEFVKRGRSG_					0	0	0			REV__CR1|p.G1229Afs*27|1|0.34|ENSG00000203710|chr1:207580338-207580338|G/-|frameshift_variant	REV__CR1|p.G1229Afs*27|1|0.34|ENSG00000203710|chr1:207580338-207580338|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.829833984375	2	574.830372	1147.64619	0.17805	0.00010235	-1.2764	-0.00073372	-1.0984	-0.00063137	574.829802441011	52.11	0.6221	52.11	51.702	52.324	0					48	22	3	0	0	0	0.3258	1	12224	12224		17.113	17.113	1	553520	+		22211	13286	12372	12373	28410	28410					0.0782732786581164
LEFVKRGRSG	10	Unmodified	_LEFVKRGRSG_					0	0	0			REV__CR1|p.G1229Afs*27|1|0.34|ENSG00000203710|chr1:207580338-207580338|G/-|frameshift_variant	REV__CR1|p.G1229Afs*27|1|0.34|ENSG00000203710|chr1:207580338-207580338|G/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	574.830372	1147.64619	0.37451	0.00021528	-1.439	-0.00082718	-1.0645	-0.0006119	574.8296133449574	52.03	0.43616	52.08	51.846	52.282	0.050575	-0.052315	-0.00034429	NaN	17.113	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540750	+		22212	13286	12372	12373							0.0782732786581164
LEFVKRGRSG	10	Unmodified	_LEFVKRGRSG_					0	0	0			REV__CR1|p.G1229Afs*27|1|0.34|ENSG00000203710|chr1:207580338-207580338|G/-|frameshift_variant	REV__CR1|p.G1229Afs*27|1|0.34|ENSG00000203710|chr1:207580338-207580338|G/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	574.830372	1147.64619	0.052523	3.0192E-05	-0.88389	-0.00050809	-0.83137	-0.0004779	574.8297450057208	52.208	0.59424	52.208	51.954	52.548	-0.00081253	0.075114	0.0002939	NaN	17.113	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	552700	+		22213	13286	12372	12373							0.0782732786581164
LEGGLVLRH	9	Unmodified	_LEGGLVLRH_					0	0	0			REV__ENST00000468803.1_1_1:161197691-161198181:+|nuORF	REV__ENST00000468803.1_1_1:161197691-161198181:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.27972412109375	2	497.295633	992.576714	0.48611	0.00024174	0.99711	0.00049586	1.4832	0.0007376	497.2956203674374	69.057	0.24406	69.129	68.993	69.237	0.071938					13	8	2	0	0	0	0.25989	1	17447	17447		14.838	3.198	1	86550	+		22214	16828	12373	12374	28411	28411					0.08012868917035121
LEGHQSLLS	9	Unmodified	_LEGHQSLLS_					0	0	0		ENST00000541712.5_1_12:123344649-123344826:+|nuORF;ENST00000538236.1_1_12:123344649-123345071:+|nuORF	ENST00000541712.5_1_12:123344649-123344826:+|nuORF	ENST00000541712.5_1_12:123344649-123344826:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.80224609375	2	492.261456	982.50836	0.33743	0.0001661	2.4743	0.001218	2.8118	0.0013841	492.2622280732804	82.341	0.82551	82.414	81.903	82.728	0.07309					46	34	2	0	0	0	0.22596	1	21489	21489		21.747	0	1	220060			22215	11700	12374	12375	28412	28412					0.01640579546540266
LEGILRWYENF	11	Unmodified	_LEGILRWYENF_					0	0	0			REV__ENSG00000189171|ENST00000476133|S100A13	REV__ENSG00000189171|ENST00000476133|S100A13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2819519042969	3	480.58211	1438.7245	0.72717	0.00034946	-0.093399	-4.4886E-05	0.63377	0.00030458	480.5820744472239	36.489	0.33243	36.575	36.479	36.811	0.08625					16	11	2	0	0	0	0.33296	1	7433	7433		2.6312	1.3016	1	121380	+		22216	18600	12375	12376	28413	28413					0.022687156603751646
LEGIVLVKF	9	Unmodified	_LEGIVLVKF_					0	0	0			REV__RAB32|p.K210Sfs*2|1|0.6|ENSG00000118508|chr6:146554553-146554553|T/-|frameshift_variant	REV__RAB32|p.K210Sfs*2|1|0.6|ENSG00000118508|chr6:146554553-146554553|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8102722167969	2	509.320786	1016.62702	0.44733	0.00022784	0.089162	4.5412E-05	0.53649	0.00027325	509.3207337201649	64.47	0.40421	64.563	64.284	64.688	0.09288					24	14	2	0	0	0	0.25526	1	15969	15969		4.3292	0	1	139900	+		22217	15015	12376	12377	28414	28414					0.11936978522180652
LEGLIKAFF	9	Unmodified	_LEGLIKAFF_					0	0	0			REV__nc|ENSG00000143921|Q9H221-2|ABCG8	REV__nc|ENSG00000143921|Q9H221-2|ABCG8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.286865234375	2	519.305136	1036.59572	0.38938	0.00020221	-1.5329	-0.00079606	-1.1435	-0.00059385	519.3044818329829	70.545	0.28181	70.521	70.329	70.611	-0.024872					11	9	2	0	0	0	0.23767	1	17889	17889		18.146	2.2992	1	77421	+		22218	16210	12377	12378	28415	28415					0.07888405488097305
LEGLLKPSIT	10	Unmodified	_LEGLLKPSIT_					0	0	0			REV__nc|ENSG00000177156|P37837-2|TALDO1	REV__nc|ENSG00000177156|P37837-2|TALDO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2928466796875	2	535.826432	1069.63831	0.89805	0.0004812	-0.58294	-0.00031236	0.31511	0.00016884	535.8260094752866	37.444	0.50156	37.444	37.233	37.735	0					41	17	3	0	0	0	0.31696	1	7664	7664		10.151	1.4052	1	455860	+		22219	17976	12378	12379	28416	28416					0.10627755825657914
LEGLLKPSIT	10	Unmodified	_LEGLLKPSIT_					0	0	0			REV__nc|ENSG00000177156|P37837-2|TALDO1	REV__nc|ENSG00000177156|P37837-2|TALDO1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	535.826432	1069.63831	0.54181	0.00029032	-0.19555	-0.00010478	0.34626	0.00018554	535.8263216445237	37.302	0.48754	37.395	37.248	37.735	0.093018	-0.044787	0.00015725	NaN	18.373	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393290	+		22220	17976	12378	12379							0.10627755825657914
LEGLYFGKE	9	Unmodified	_LEGLYFGKE_					0	0	0		ENST00000560361.5_1_20:39842537-39867424:-|nuORF	ENST00000560361.5_1_20:39842537-39867424:-|nuORF	ENST00000560361.5_1_20:39842537-39867424:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.274658203125	2	528.274032	1054.53351	0.48244	0.00025486	0.58382	0.00030842	1.0663	0.00056328	528.2741326430174	80.691	0.71915	80.691	80.389	81.108	0					55	32	2	0	0	0	0.12642	1	21010	21010		34.402	0	1	563520			22221	11896	12379	12380	28417	28417					0.008426343491237276
LEGQPGRKVT	10	Unmodified	_LEGQPGRKVT_					0	0	0			REV__ENST00000464060.5_1_3:65438903-66023983:-|nuORF	REV__ENST00000464060.5_1_3:65438903-66023983:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7698364257812	2	542.809105	1083.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.977	1	85.058	84.558	85.558	0.080887								0	0	0	0.37739	1	22295	22295		3.2813	0.28607	1		+		22222	16532	12380	12381	28418	28418					0.06519932737569434
LEHCLKYLL	9	Unmodified	_LEHCLKYLL_					0	0	0		ENST00000298569.8_1_5:175773184-175773430:-|nuORF	ENST00000298569.8_1_5:175773184-175773430:-|nuORF	ENST00000298569.8_1_5:175773184-175773430:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.7837524414062	2	566.315177	1130.6158	0.10404	5.8917E-05	-0.56796	-0.00032165	-0.46393	-0.00026273	566.3150227225699	12.267	0.26174	12.17	12.094	12.356	-0.096606					13	8	2	0	0	0	0.25622	1	86	86		7.2892	1.0834	1	36395			22223	9208	12381	12382	28419	28419					0.05571833156386674
LEHFAELF	8	Unmodified	_LEHFAELF_					0	0	0		ENSG00000131477|ENST00000253796|RAMP2;nc|ENSG00000131477|O60895-2|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.290283203125	2	503.255643	1004.49673	0.44117	0.00022202	2.6094	0.0013132	3.0505	0.0015352	503.75938933956223	58.544	0.93053	58.544	57.986	58.917	0					42	31	2	0	0	0	0.29134	1	14242	14242		34.187	17.245	1	285590			22224	3571	12382	12383	28420	28420					-0.005336174768103774
LEHIKKELT	9	Unmodified	_LEHIKKELT_					0	0	0			REV__ENSG00000157827|ENST00000288670|FMNL2	REV__ENSG00000157827|ENST00000288670|FMNL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8405151367188	2	555.829506	1109.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.329	1	33.395	32.895	33.895	0.066704								0	0	0	0.21353	1	6447	6447		18.146	1.0335	1		+		22225	16796	12383	12384	28421	28421					0.09402274057174509
LEHIRKKRHF	10	Unmodified	_LEHIRKKRHF_					0	0	0		ENSG00000162302|ENST00000334205|RPS6KA4;nc|ENSG00000162302|O75676-2|RPS6KA4	ENSG00000162302|ENST00000334205|RPS6KA4	ENSG00000162302|ENST00000334205|RPS6KA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2433776855469	3	455.273834	1362.79967	0.11896	5.4158E-05	1.5394	0.00070083	1.6583	0.00075498	455.2743449690651	39.501	0.4974	39.594	39.36	39.858	0.09267					30	17	2	0	0	0	0.31969	1	8380	8380		5.7834	0.38072	1	311690			22226	5558	12384	12385	28422	28422					0.13278362702112645
LEHLALVL	8	Unmodified	_LEHLALVL_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|3.769426837090129|0.2447948664736123|3.94|541.0|7|1|sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|3.769426837090129|0.2447948664736123|3.94|541.0|7|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2842712402344	2	454.284203	906.553853	0.15085	6.853E-05	0.17143	7.7878E-05	0.32228	0.00014641	454.28414712729165	68.132	1.6463	68.132	67.809	69.455	0					125	59	4	0	0	0	0.35375	1	17202	17202		24.674	0	1	1431000	+		22227	22848	12385	12386	28423	28423					0.0968384979955772
LEHLALVL	8	Unmodified	_LEHLALVL_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|3.769426837090129|0.2447948664736123|3.94|541.0|7|1|sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|3.769426837090129|0.2447948664736123|3.94|541.0|7|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2842102050781	2	454.284203	906.553853	0.19502	8.8594E-05	0.0616	2.7984E-05	0.25662	0.00011658	454.28415418217355	68.114	1.6559	68.096	67.837	69.493	-0.017769					125	58	3	0	0	0	0.35375	1	17200	17200		24.674	0	1	1284100	+		22228	22848	12385	12386	28424	28424					0.0968384979955772
LEHRHHSVT	9	Unmodified	_LEHRHHSVT_					0	0	0		ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2;ENSG00000100350|ENST00000397224|FOXRED2	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	ENST00000366463.6_1_22:36886057-36894231:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2886352539062	2	558.288871	1114.56319	0.14615	8.1594E-05	-0.8023	-0.00044792	-0.65615	-0.00036632	558.2886105928285	16.11	0.68737	16.11	15.918	16.606	0					57	23	4	0	0	0	0.24467	1	1231	1231		17.113	4.8722	1	289730			22229	1577	12386	12387	28425	28425					0.010490111377976064
LEHRRQQEL	9	Unmodified	_LEHRRQQEL_					0	0	0		ENST00000505350.1_1_5:112043362-112090604:+|nuORF	ENST00000505350.1_1_5:112043362-112090604:+|nuORF	ENST00000505350.1_1_5:112043362-112090604:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.55462646484375	3	403.554666	1207.64217	-0.54104	-0.00021834	0.10774	4.3481E-05	-0.43329	-0.00017486	403.55473544366254	13.951	0.39113	13.847	13.658	14.049	-0.10466					33	13	3	0	0	0	0.21026	1	569	569		28.495	3.5035	1	242380			22230	11314	12387	12388	28426	28426					0.04665238372103886
LEHWDEMLSK	10	Unmodified	_LEHWDEMLSK_					0	0	0		ENSG00000277758|ENST00000615923|SYT15B;ENSG00000204176|ENST00000374321|SYT15;nc|ENSG00000277758|X6R8R1|SYT15B;nc|ENSG00000204176|Q9BQS2-3|SYT15	ENSG00000277758|ENST00000615923|SYT15B	ENSG00000277758|ENST00000615923|SYT15B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.305419921875	2	644.305538	1286.59652	0.027857	1.7948E-05	0.27764	0.00017888	0.30549	0.00019683	644.3056761172855	39.002	0.64451	39.002	38.649	39.294	0					38	22	2	0	0	0	0.35637	1	8202	8202		11.495	0	1	334400			22231	8201	12388	12389	28427	28427					-0.03531167925166301
LEHWDEMLSK	10	Unmodified	_LEHWDEMLSK_					0	0	0		ENSG00000277758|ENST00000615923|SYT15B;ENSG00000204176|ENST00000374321|SYT15;nc|ENSG00000277758|X6R8R1|SYT15B;nc|ENSG00000204176|Q9BQS2-3|SYT15	ENSG00000277758|ENST00000615923|SYT15B	ENSG00000277758|ENST00000615923|SYT15B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.3058471679688	2	644.305538	1286.59652	0.70904	0.00045684	-0.48789	-0.00031435	0.22115	0.00014249	644.3049110433798	45.401	0.42405	45.461	45.253	45.677	0.059834					25	14	2	0	0	0	0.29092	1	10157	10157		21.537	3.1639	1	368600			22232	8201	12388	12389	28428	28428					-0.03531167925166301
LEHWDEMLSK	10	Unmodified	_LEHWDEMLSK_					0	0	0		ENSG00000277758|ENST00000615923|SYT15B;ENSG00000204176|ENST00000374321|SYT15;nc|ENSG00000277758|X6R8R1|SYT15B;nc|ENSG00000204176|Q9BQS2-3|SYT15	ENSG00000277758|ENST00000615923|SYT15B	ENSG00000277758|ENST00000615923|SYT15B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	644.305538	1286.59652	0.35978	0.00023181	-0.13614	-8.7717E-05	0.22364	0.00014409	644.3053625368109	38.899	0.68266	38.992	38.544	39.226	0.09267	-0.011095	-4.1045E-05	NaN	11.495	44	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420320			22233	8201	12388	12389							-0.03531167925166301
LEHYLLTL	8	Unmodified	_LEHYLLTL_					0	0	0		ENSG00000166106|ENST00000299164|ADAMTS15	ENSG00000166106|ENST00000299164|ADAMTS15	ENSG00000166106|ENST00000299164|ADAMTS15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3033142089844	2	501.286943	1000.55933	0.42905	0.00021508	1.0239	0.00051325	1.4529	0.00072833	501.2874915572467	72.183	0.46313	72.183	71.911	72.374	0					28	16	2	0	0	0	0.35375	1	18327	18327		24.674	6.5389	1	188190			22234	6029	12389	12390	28429	28429					0.059075285913763764
LEIDSLYEGI	10	Unmodified	_LEIDSLYEGI_					0	0	0		ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204390|ENST00000375654|HSPA1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.2916259765625	2	576.295162	1150.57577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.37	1	113.37	112.87	113.87	0								0	0	0	0.37664	1	29446	29446		3.5965	0	1				22235	8222	12390	12391	28430	28430					0.006505649668270053
LEIFILILMA	10	Unmodified	_LEIFILILMA_					0	0	0		OR4C16|p.T116M|1|0.28|ENSG00000279514|chr11:55572474-55572474|C/T|missense_variant	OR4C16|p.T116M|1|0.28|ENSG00000279514|chr11:55572474-55572474|C/T|missense_variant	OR4C16|p.T116M|1|0.28|ENSG00000279514|chr11:55572474-55572474|C/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3081665039062	2	588.359053	1174.70355	0.20122	0.00011839	1.1567	0.00068057	1.3579	0.00079896	588.3599224099582	69.367	0.22599	69.367	69.229	69.455	0					9	7	2	0	0	0	0.31847	1	17530	17530		6.7232	6.7232	1	106760			22236	13036	12391	12392	28431	28431					0.12319034027177622
LEIIQYIDL	9	Unmodified	_LEIIQYIDL_					0	0	0			REV__ENSG00000140521|ENST00000268124|POLG	REV__ENSG00000140521|ENST00000268124|POLG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8350830078125	2	560.31844	1118.62233	0.30059	0.00016843	1.1163	0.0006255	1.4169	0.00079392	560.8207366095467	66.843	0.41789	66.843	66.63	67.048	0					19	14	2	0	0	0	0.25066	1	16792	16792		11.64	0	1	114160	+		22237	16039	12392	12393	28432	28432					0.06776049588756905
LEILACLPF	9	Unmodified	_LEILACLPF_					0	0	0		ENST00000598369.1_1_19:53284601-53290004:-|nuORF;ENST00000599893.1_1_19:53284204-53290040:-|nuORF;ENST00000338230.3_2_19:53270898-53289983:-|nuORF	ENST00000598369.1_1_19:53284601-53290004:-|nuORF	ENST00000598369.1_1_19:53284601-53290004:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2657165527344	2	509.785721	1017.55689	0.6609	0.00033692	3.3035	0.0016841	3.9644	0.002021	509.7872233448764	50.759	0.32767	50.805	50.63	50.957	0.046574					18	11	2	0	0	0	0.20279	1	11813	11813		19.439	5.5329	1	144410			22238	9502	12393	12394	28433	28433					0.04881356862051689
LEILEGITI	9	Unmodified	_LEILEGITI_					0	0	0		ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.30242919921875	2	500.799883	999.585213	0.53909	0.00026998	-1.4617	-0.00073203	-0.92262	-0.00046205	500.79839382098555	86.587	0.8662	86.587	86.072	86.938	0					105	34	4	0	0	0	0.31038	1	22751	22751		7.2892	0	1	287250			22239	7236	12394	12395	28434	28434					0.08540378042994234
LEKAHPVRR	9	Unmodified	_LEKAHPVRR_					0	0	0		ENST00000430321.5_1_2:170885919-170897403:+|nuORF	ENST00000430321.5_1_2:170885919-170897403:+|nuORF	ENST00000430321.5_1_2:170885919-170897403:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3326416015625	2	553.333082	1104.65161	0.42498	0.00023516	-2.4479	-0.0013545	-2.0229	-0.0011193	553.3324526209802	86.571	2.1329	86.656	86.209	88.342	0.084251					198	99	4	0	0	0	0.29176	1	22766	22766		10.074	1.3285	1	1127700			22240	10463	12395	12396	28435	28435					0.10347051448275124
LEKAHPVRR	9	Unmodified	_LEKAHPVRR_					0	0	0		ENST00000430321.5_1_2:170885919-170897403:+|nuORF	ENST00000430321.5_1_2:170885919-170897403:+|nuORF	ENST00000430321.5_1_2:170885919-170897403:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	553.333082	1104.65161	0.4555	0.00025204	-1.9982	-0.0011056	-1.5427	-0.0008536	553.3324123249081	86.696	1.3796	86.69	86.237	87.617	-0.0056229	-0.0056348	2.8226E-06	NaN	10.074	150	59	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1283700			22241	10463	12395	12396							0.10347051448275124
LEKDLRLVY	9	Unmodified	_LEKDLRLVY_					0	0	0		ENST00000419510.6_1_3:187454417-187454675:-|nuORF	ENST00000419510.6_1_3:187454417-187454675:-|nuORF	ENST00000419510.6_1_3:187454417-187454675:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3512573242188	2	574.837331	1147.66011	0.40861	0.00023488	-2.2796	-0.0013104	-1.871	-0.0010755	574.8355391691155	89.811	0.13236	89.901	89.804	89.936	0.090569					12	9	2	0	0	0	0.25323	1	23780	23780		10.074	0.6908	1	55427			22242	10352	12396	12397	28436	28436					0.09218560574208823
LEKDSDCASF	10	Unmodified	_LEKDSDCASF_					0	0	0		ENST00000486442.5_1_2:23930069-23930237:+|nuORF	ENST00000486442.5_1_2:23930069-23930237:+|nuORF	ENST00000486442.5_1_2:23930069-23930237:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.8057250976562	2	557.739696	1113.46484	0.18224	0.00010164	0.50774	0.00028319	0.68999	0.00038483	557.7399435366347	69.304	0.59135	69.282	68.972	69.564	-0.022087					36	20	3	0	0	0	0.29589	1	17509	17509		22.736	3.2973	1	257430			22243	11104	12397	12398	28437	28437					-0.0873539801291372
LEKEELCQRL	10	Unmodified	_LEKEELCQRL_					0	0	0		ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.8921203613281	3	420.892067	1259.65437	-0.16479	-6.9358E-05	-0.099891	-4.2043E-05	-0.26468	-0.0001114	420.8919694743678	23.098	0.69723	23.01	22.736	23.433	-0.087608					57	24	3	0	0	0	0.35624	1	3324	3324		11.518	0.61892	1	353120			22244	8070	12398	12399	28438	28438					0.03493094000259589
LEKEKNLTKD	10	Unmodified	_LEKEKNLTKD_					0	0	0		ENSG00000118407|ENST00000237172|FILIP1;nc|ENSG00000118407|Q7Z7B0-2|FILIP1;nc|ENSG00000118407|Q7Z7B0-3|FILIP1	ENSG00000118407|ENST00000237172|FILIP1	ENSG00000118407|ENST00000237172|FILIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8367309570312	2	609.340435	1216.66632	0.24041	0.00014649	-2.1193	-0.0012913	-1.8788	-0.0011449	609.3390810226517	105.46	0.025459	105.46	105.44	105.47	0.0031738					5	3	2	0	0	0	0.31926	1	27963	27963		5.7319	0	1	71206			22245	2825	12399	12400	28439	28439					0.06665034015077254
LEKELAPLF	9	Unmodified	_LEKELAPLF_					0	0	0		nc|ENSG00000109270|Q9UHA4-2|LAMTOR3;ENSG00000109270|ENST00000499666|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2957763671875	2	530.307875	1058.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.58	1	100.58	100.08	101.08	-0.006897								0	0	0	0.24522	1	26903	26903		7.9102	2.6795	1				22246	2247	12400	12401	28440	28440					0.07424084279887211
LEKEREKEISD	11	Unmodified	_LEKEREKEISD_					0	0	0		HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;HSP90AB1|p.I483Hfs*7|1|0.32|ENSG00000096384|chr6:44251866-44251867|-/C|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;nc|ENSG00000205940|Q58FF8|HSP90AB2P	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.24957275390625	3	459.240301	1374.69907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.912	1	79.883	79.383	80.383	-0.028931								0	0	0	0.36075	1	20729	20729		5.8681	3.0249	1				22247	1466;12916	12401	12402	28441	28441					0.026711963472962452
LEKERERRQ	9	Unmodified	_LEKERERRQ_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3473510742188	2	622.346917	1242.67928	0.49695	0.00030928	0.38137	0.00023734	0.87832	0.00054662	622.3470765266429	85.83	2.7365	85.83	84.994	87.731	0					216	110	3	0	0	0	0.32371	1	22815	22815		5.2969	0.76802	1	1062300	+		22248	16854	12402	12403	28442	28442					0.06764909917865225
LEKERKKT	8	Unmodified	_LEKERKKT_					0	0	0		nc|ENSG00000180336|A2RUB1-1|MEIOC;nc|ENSG00000180336|A2RUB1-2|MEIOC;nc|ENSG00000180336|A2RUB1-5|MEIOC;ENSG00000180336|ENST00000409122|MEIOC	nc|ENSG00000180336|A2RUB1-1|MEIOC	nc|ENSG00000180336|A2RUB1-1|MEIOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.3143920898438	2	516.314023	1030.61349	0.34612	0.00017871	0.26627	0.00013748	0.61239	0.00031618	516.3141156803164	88.845	1.513	88.935	88.495	90.008	0.090569					232	85	4	0	0	0	0.45307	1	23707	23707		4.756	0	1	6243700			22249	7180	12403	12404	28443	28443					0.0994112074295117
LEKFRYLPK	9	Unmodified	_LEKFRYLPK_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.753173828125	2	597.355691	1192.69683	0.79139	0.00047274	0.23848	0.00014246	1.0299	0.00061519	597.3557592194888	54.821	0.55507	54.884	54.434	54.989	0.063202					28	20	2	0	0	0	0.25622	1	12961	12961		3.9444	0	1	363120			22250	288	12404	12405	28444	28444					0.10818857190793096
LEKGDFGQLS	10	Unmodified	_LEKGDFGQLS_					0	0	0		nc|ENSG00000230246|P0DKV0-2|SPATA31C1;nc|ENSG00000177910|B4DYI2|SPATA31C2;nc|ENSG00000230246|P0DKV0|SPATA31C1	nc|ENSG00000230246|P0DKV0-2|SPATA31C1	nc|ENSG00000230246|P0DKV0-2|SPATA31C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7633056640625	2	547.279846	1092.54514	0.8137	0.00044532	0.0157	8.5921E-06	0.8294	0.00045392	547.2798201117938	41.808	0.65966	41.905	41.7	42.36	0.096622					46	24	2	0	0	0	0.30958	1	9147	9147		19.257	0	1	4528900			22251	12857	12405	12406	28445	28445					0.0025683137246232945
LEKGFVTRE	9	Unmodified	_LEKGFVTRE_					0	0	0			REV__ENSG00000154764|ENST00000285018|WNT7A	REV__ENSG00000154764|ENST00000285018|WNT7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3483276367188	2	539.798206	1077.58186	0.56766	0.00030642	1.931	0.0010424	2.4987	0.0013488	540.3013440156243	96.428	0.26523	96.423	96.227	96.492	-0.0055466					33	26	2	0	0	0	0.25202	1	25744	25744		10.824	6.0679	1	81370	+		22252	16676	12406	12407	28446	28446					0.0461712798901317
LEKGKKER	8	Unmodified	_LEKGKKER_					0	0	0		ENST00000372562.1_1_1:42921808-42921991:+|nuORF	ENST00000372562.1_1_1:42921808-42921991:+|nuORF	ENST00000372562.1_1_1:42921808-42921991:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.3011474609375	2	494.300916	986.587279	0.49061	0.00024251	0.24918	0.00012317	0.73978	0.00036568	494.300972210608	86.967	1.2777	86.961	86.557	87.835	-0.0056152					168	58	4	0	0	0	0.44734	1	22885	22885		6.7232	6.7232	1	7059700			22253	9844	12407	12408	28447	28447					0.09344851571472645
LEKHLDALL	9	Unmodified	_LEKHLDALL_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.E750Dfs*31|1|0.27|ENSG00000101972|chrX:124066420-124066430|AAAGCAGCTCT/-|frameshift_variant;STAG2|p.L995*|1|0.54|ENSG00000101972|chrX:124083478-124083478|T/-|frameshift_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.301025390625	2	526.310949	1050.60735	0.71753	0.00037765	-1.7568	-0.0009246	-1.0392	-0.00054696	526.3099580421573	64.022	0.38333	64.022	63.746	64.13	0					16	13	2	0	0	0	0.23007	1	15892	15892		19.257	19.257	1	175500			22254	1732	12408	12409	28448	28448					0.08406602511422534
LEKHLDALL	9	Unmodified	_LEKHLDALL_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.E750Dfs*31|1|0.27|ENSG00000101972|chrX:124066420-124066430|AAAGCAGCTCT/-|frameshift_variant;STAG2|p.L995*|1|0.54|ENSG00000101972|chrX:124083478-124083478|T/-|frameshift_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	526.310949	1050.60735	0.71753	0.00037765	-1.7568	-0.0009246	-1.0392	-0.00054696	526.3099580421573	64.022	0.38333	64.022	63.746	64.13	0	0	0	NaN	19.257	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175500			22255	1732	12408	12409							0.08406602511422534
LEKHRLVSRT	10	Unmodified	_LEKHRLVSRT_					0	0	0		ENST00000461159.6_1_7:18330122-18868840:+|nuORF;HDAC9|p.Y832Mfs*39|1|0.35|ENSG00000048052|chr7:18835500-18835500|T/-|frameshift_variant;nc|ENSG00000048052|Q9UKV0-4|HDAC9;nc|ENSG00000048052|Q9UKV0-2|HDAC9;HDAC9|p.G954Sfs*19|1|0.03|ENSG00000048052|chr7:18935873-18935874|-/TCTAACAT|frameshift_variant;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-6|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;ENSG00000048052|ENST00000686413|HDAC9	ENST00000461159.6_1_7:18330122-18868840:+|nuORF	ENST00000461159.6_1_7:18330122-18868840:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8694458007812	2	619.870028	1237.7255	0.29543	0.00018313	-0.1832	-0.00011356	0.11223	6.9568E-05	619.8690396100932	94.564	1.5426	94.562	93.798	95.341	-0.0020142					222	130	2	0	0	0	0.41085	1	25394	25394		1.4819	0	1	200390			22256	640	12409	12410	28449	28449					0.11614974819940471
LEKIFILYRRI	11	Unmodified	_LEKIFILYRRI_					0	0	0		ENST00000381226.7_1_5:56219865-56224679:-|nuORF	ENST00000381226.7_1_5:56219865-56224679:-|nuORF	ENST00000381226.7_1_5:56219865-56224679:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2682800292969	3	488.641412	1462.90241	0.15737	7.6895E-05	-1.6595	-0.00081092	-1.5022	-0.00073402	488.64068208424123	41.199	0.59456	41.295	40.803	41.397	0.096626					39	21	2	0	0	0	0.33347	1	8745	8745		0.45452	0.45452	1	491490			22257	9995	12410	12411	28450	28450					0.1894701065020854
LEKIRAELKMI	11	Unmodified	_LEKIRAELKMI_					0	0	0			REV__nc|ENSG00000002079|Q9H6N6|MYH16	REV__nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.6081848144531	3	448.607491	1342.80064	0.38934	0.00017466	0.83074	0.00037268	1.2201	0.00054733	448.6080642858618	87.435	0.85531	87.435	86.938	87.794	0					102	38	4	0	0	0	0.47633	1	23093	23093		1.2148	0.588	1	681480	+		22258	22874	12411	12412	28451	28451					0.14295396236116176
LEKISSREK	9	Unmodified	_LEKISSREK_					0	0	0		ENSG00000114446|ENST00000264538|IFT57	ENSG00000114446|ENST00000264538|IFT57	ENSG00000114446|ENST00000264538|IFT57	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.7755737304688	2	545.316763	1088.61897	0.73294	0.00039969	-0.92529	-0.00050458	-0.19235	-0.00010489	545.3164486969375	82.816	0.88247	82.796	82.224	83.106	-0.020576					125	34	6	0	0	0	0.24993	1	21640	21640		8.7454	0	1	1451100			22259	2566	12412	12413	28452	28452					0.07820799534761136
LEKIVKKIMH	10	Unmodified	_LEKIVKKIMH_					0	0	0		ENSG00000128655|ENST00000286063|PDE11A;ENST00000497003.5_1_2:178552959-178791632:-|nuORF;nc|ENSG00000128655|Q9HCR9-3|PDE11A;nc|ENSG00000128655|Q9HCR9-2|PDE11A	ENSG00000128655|ENST00000286063|PDE11A	ENSG00000128655|ENST00000286063|PDE11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8873291015625	2	619.886301	1237.75805	-0.10341	-6.4101E-05	0.95442	0.00059163	0.85102	0.00052753	619.8869937151885	102.92	0.3703	102.94	102.61	102.98	0.016685					113	49	3	0	0	0	0.31926	1	27335	27335		5.7319	2.1354	1	779110			22260	3385	12413	12414	28453	28453					0.14868045898560922
LEKKDVET	8	Unmodified	_LEKKDVET_					0	0	0		nc|ENSG00000087206|Q96RL1-5|UIMC1;ENST00000417486.6_1_5:176397643-176409616:-|nuORF;UIMC1|p.R365Hfs*19|1|0.1|ENSG00000087206|chr5:176968659-176968662|CCCT/-|frameshift_variant;nc|ENSG00000087206|Q96RL1-2|UIMC1;ENSG00000087206|ENST00000511320|UIMC1	nc|ENSG00000087206|Q96RL1-5|UIMC1	nc|ENSG00000087206|Q96RL1-5|UIMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2632141113281	2	481.263665	960.512776	0.23146	0.00011139	-0.49945	-0.00024037	-0.26799	-0.00012898	481.2631209570506	82.064	0.49269	82.064	81.769	82.262	0					27	17	2	0	0	0	0.4419	1	21423	21423		8.5933	0	1	252810			22261	1299	12414	12415	28454	28454					0.030940439694290944
LEKKHGPLEGK	11	Unmodified	_LEKKHGPLEGK_					0	0	0		ENST00000507866.6_1_4:7743315-7743591:+|nuORF	ENST00000507866.6_1_4:7743315-7743591:+|nuORF	ENST00000507866.6_1_4:7743315-7743591:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.3572998046875	2	618.358962	1234.70337	0.065657	4.0599E-05	-0.17505	-0.00010824	-0.10939	-6.7642E-05	618.3572699170875	94.614	0.52277	94.614	94.463	94.986	0					77	46	3	0	0	0	0.42346	3	25218	25218;25249;25346		8.1555	2.4237	1	109840			22262	11344	12415	12416	28455;28456;28457	28455					0.09540750351493443
LEKKRLFF	8	Unmodified	_LEKKRLFF_					0	0	0		nc|ENSG00000158486|Q8TD57-3|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;DNAH3|p.K2298Nfs*18|1|0.3|ENSG00000158486|chr16:20987437-20987437|T/-|frameshift_variant;DNAH3|p.L3142Cfs*14|1|0.19|ENSG00000158486|chr16:20964459-20964459|A/-|frameshift_variant;ENSG00000158486|ENST00000698260|DNAH3;ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000174844|Q6ZR08|DNAH12;ENSG00000174844|ENST00000495027|DNAH12	nc|ENSG00000158486|Q8TD57-3|DNAH3;ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000174844|Q6ZR08|DNAH12	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3197021484375	2	540.831852	1079.64915	0.34171	0.00018481	0.31647	0.00017115	0.65817	0.00035596	540.8319579924125	96.535	0.13663	96.606	96.578	96.715	0.070465					19	13	2	0	0	0	0.34247	1	25830	25830		8.5933	1.304	1	55779			22263	2855;6822;12782	12416	12417	28458	28458					0.11251202990615639
LEKKSGRNYG	10	Unmodified	_LEKKSGRNYG_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76475094-76487566:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76475094-76487566:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7946166992188	2	576.312012	1150.60947	0.32699	0.00018845	1.3208	0.00076117	1.6478	0.00094962	576.3127738878275	94.912	0.44085	94.91	94.716	95.157	-0.0020142					58	35	2	0	0	0	0.31958	1	25369	25369		5.2969	1.3525	1	131800			22264	7707;12113	12417	12418	28459	28459					0.04019031249231375
LEKKSLRN	8	Unmodified	_LEKKSLRN_					0	0	0			REV__ENST00000487593.1_1_20:52779237-52781081:-|nuORF	REV__ENST00000487593.1_1_20:52779237-52781081:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.30120849609375	2	494.300916	986.587279	0.57272	0.0002831	0.084994	4.2013E-05	0.65772	0.00032511	494.30093072190726	86.96	1.3173	86.96	86.571	87.888	0					179	57	4	0	0	0	0.44569	1	22909	22909		7.2892	0	1	8166000	+		22265	13458	12418	12419	28460	28460					0.09344851571484014
LEKKSLRN	8	Unmodified	_LEKKSLRN_					0	0	0			REV__ENST00000487593.1_1_20:52779237-52781081:-|nuORF	REV__ENST00000487593.1_1_20:52779237-52781081:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.3011779785156	2	494.300916	986.587279	0.46114	0.00022794	0.27587	0.00013636	0.73701	0.0003643	494.3009964772224	86.927	1.3022	87.014	86.554	87.856	0.087097					180	59	4	0	0	0	0.44569	1	22866	22866		7.2892	0	1	7757700	+		22266	13458	12418	12419	28461	28461					0.09344851571484014
LEKKSLRN	8	Unmodified	_LEKKSLRN_					0	0	0			REV__ENST00000487593.1_1_20:52779237-52781081:-|nuORF	REV__ENST00000487593.1_1_20:52779237-52781081:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.30133056640625	2	494.300916	986.587279	0.49061	0.00024251	0.24918	0.00012317	0.73978	0.00036568	494.300972210608	86.967	1.2777	86.961	86.557	87.835	-0.0056152					168	58	4	0	0	0	0.44569	1	22929	22929		7.2892	0	1	7059700	+		22267	13458	12418	12419	28462	28462					0.09344851571484014
LEKLTLTV	8	Unmodified	_LEKLTLTV_					0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7894287109375	2	458.789318	915.564084	0.048115	2.2075E-05	0.051156	2.347E-05	0.099271	4.5545E-05	458.7894392942785	66.677	0.65515	66.664	66.433	67.089	-0.013588					51	23	3	0	0	0	0.071344	1	16685	16685		68.081	6.7232	1	381160	+		22268	16557	12419	12420	28463	28463					0.10292412734133904
LEKLVEQRG	9	Unmodified	_LEKLVEQRG_					0	0	0		ENST00000527740.1_1_8:145998653-146003561:-|nuORF;ENSG00000196378|ENST00000429371|ZNF34;nc|ENSG00000196378|Q8IZ26|ZNF34;ZNF34|p.K509Sfs*7|1|0.1|ENSG00000196378|chr8:144773415-144773424|AGGCTTTCTT/-|frameshift_variant	ENST00000527740.1_1_8:145998653-146003561:-|nuORF	ENST00000527740.1_1_8:145998653-146003561:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.3119506835938	2	536.31148	1070.60841	0.42309	0.00022691	0.47225	0.00025327	0.89534	0.00048018	536.3116740263903	88.065	0.79979	88.154	87.874	88.674	0.089195					97	38	3	0	0	0	0.31763	1	23193	23193		6.2058	0	1	788570			22269	7856	12420	12421	28464	28464					0.07592816880332975
LEKNEKKL	8	Unmodified	_LEKNEKKL_					0	0	0			REV__ENSG00000112312|ENST00000230056|GMNN	REV__ENSG00000112312|ENST00000230056|GMNN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.63427734375	2	501.303124	1000.5917	0.46053	0.00023087	1.5151	0.00075952	1.9756	0.00099038	501.3039788037875	93.617	0.24915	93.617	93.414	93.663	-0.00050354					25	19	2	0	0	0	0.34039	1	24911	24911		10.824	5.0921	1	86672	+		22270	14772	12421	12422	28465	28465					0.09142315994370165
LEKNKIPAL	9	Unmodified	_LEKNKIPAL_					0	0	0		ENSG00000151503|ENST00000534548|NCAPD3;ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2927856445312	2	513.321317	1024.62808	0.22218	0.00011405	-0.64708	-0.00033216	-0.4249	-0.00021811	513.320879515227	63.181	0.41279	63.173	62.938	63.351	-0.0085526					21	14	2	0	0	0	0.24289	1	15622	15622		13.042	0	1	137790			22271	4967	12422	12423	28466	28466					0.11675192891084407
LEKQLKEVF	9	Unmodified	_LEKQLKEVF_					0	0	0		nc|ENSG00000187398|Q86TE4-3|LUZP2;nc|ENSG00000187398|Q86TE4-2|LUZP2;ENST00000405855.6_1_11:24518789-24853530:+|nuORF;ENST00000531187.5_1_11:24518651-24912476:+|nuORF;ENST00000449567.6_1_11:24518651-24807587:+|nuORF;ENSG00000187398|ENST00000336930|LUZP2	nc|ENSG00000187398|Q86TE4-3|LUZP2	nc|ENSG00000187398|Q86TE4-3|LUZP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.330322265625	2	567.331882	1132.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.73	1	115.75	115.25	116.25	0.018738								0	0	0	0.2575	1	30053	30053		3.9444	0.3479	1				22272	7678	12423	12424	28467	28467					0.0881915819995811
LEKQLRAQRR	10	Unmodified	_LEKQLRAQRR_					0	0	0			REV__nc|ENSG00000085978|Q676U5-5|ATG16L1	REV__nc|ENSG00000085978|Q676U5-5|ATG16L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.59771728515625	3	433.265227	1296.77385	-0.11067	-4.795E-05	0.84048	0.00036415	0.72981	0.0003162	433.265361175897	98.83	0.84941	98.823	98.303	99.153	-0.0069046					163	99	2	0	0	0	0.32143	1	26469	26469		1.5923	0	1	674920	+		22273	13971	12424	12425	28468	28468					0.13733468459827236
LEKREDCL	8	Unmodified	_LEKREDCL_					0	0	0			REV__EIF4G1|p.Q1519R|1|0.25|ENSG00000114867|chr3:184332024-184332024|A/G|missense_variant	REV__EIF4G1|p.Q1519R|1|0.25|ENSG00000114867|chr3:184332024-184332024|A/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.75347900390625	2	503.255317	1004.49608	0.44759	0.00022525	0.18725	9.4232E-05	0.63484	0.00031948	503.25532799144884	56.982	0.86168	56.982	56.633	57.495	0					43	31	2	0	0	0	0.34167	1	13839	13839		11.64	0	1	551100	+		22274	13309	12425	12426	28469	28469					-0.005987801881701671
LEKRIERG	8	Unmodified	_LEKRIERG_					0	0	0			REV__ENSG00000104835|ENST00000221431|SARS2	REV__ENSG00000104835|ENST00000221431|SARS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7987365722656	2	500.79854	999.582528	0.41973	0.0002102	2.1778	0.0010907	2.5976	0.0013009	500.79847093098664	86.488	0.90691	86.573	86.209	87.116	0.084251					67	36	3	0	0	0	0.44734	1	22745	22745		6.7232	1.4925	1	315860	+		22275	14422	12426	12427	28470	28470					0.08271967428720473
LEKRLHATEA	10	Unmodified	_LEKRLHATEA_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3460083007812	2	584.327662	1166.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.47	1	102.47	101.97	102.97	0								0	0	0	0.3726	1	27265	27265		5.2969	0.96765	1		+		22276	18643	12427	12428	28471	28471					0.0641160428335752
LEKRLLDN	8	Unmodified	_LEKRLLDN_					0	0	0			REV__ENSG00000187672|ENST00000288221|ERC2	REV__ENSG00000187672|ENST00000288221|ERC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3133239746094	2	500.792924	999.571294	0.16767	8.3968E-05	0.42264	0.00021165	0.5903	0.00029562	500.7930020261457	30.736	0.55087	30.763	30.505	31.056	0.027157					22	19	2	0	0	0	0.33661	1	5673	5673		19.257	3.4098	1	91951	+		22277	18513	12428	12429	28472	28472					0.07149145334574314
LEKRVSRS	8	Unmodified	_LEKRVSRS_					0	0	0		ENSG00000178971|ENST00000651323|CTC1;nc|ENSG00000178971|Q2NKJ3-2|CTC1	ENSG00000178971|ENST00000651323|CTC1	ENSG00000178971|ENST00000651323|CTC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7908020019531	2	487.790715	973.566878	0.36554	0.00017831	0.46078	0.00022476	0.82632	0.00040307	487.7907373002169	71.909	1.9917	71.966	71.238	73.23	0.056572					162	72	3	0	0	0	0.44569	1	18607	18607		7.2892	1.0834	1	950180			22278	7092	12429	12430	28473	28473					0.07903680911670108
LEKSAKKDSK	10	Unmodified	_LEKSAKKDSK_					0	0	0		nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1;PLCB1|p.A965_L966insT|1|0.06|ENSG00000182621|chr20:8765323-8765324|-/ACC|inframe_insertion	nc|ENSG00000182621|Q9NQ66-2|PLCB1	nc|ENSG00000182621|Q9NQ66-2|PLCB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3297729492188	2	567.32987	1132.64519	0.37457	0.0002125	-0.30141	-0.000171	0.073151	4.1501E-05	567.329755597451	82.159	4.0309	82.228	80.932	84.963	0.068993					665	170	5	0	0	0	0.37454	2	21599	21599;21647		8.1555	8.1555	1	20842000			22279	7304	12430	12431	28474;28475	28474					0.08417068706239661
LEKSAKKDSK	10	Unmodified	_LEKSAKKDSK_					0	0	0		nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1;PLCB1|p.A965_L966insT|1|0.06|ENSG00000182621|chr20:8765323-8765324|-/ACC|inframe_insertion	nc|ENSG00000182621|Q9NQ66-2|PLCB1	nc|ENSG00000182621|Q9NQ66-2|PLCB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.329833984375	2	567.32987	1132.64519	0.37678	0.00021376	-0.29089	-0.00016503	0.085891	4.8729E-05	567.3297156430638	82.255	3.9465	82.231	81.019	84.966	-0.02404					641	165	5	0	0	0	0.37454	1	21903	21903		8.1555	8.1555	1	21005000			22280	7304	12430	12431	28476	28476					0.08417068706239661
LEKSKRSSK	9	Unmodified	_LEKSKRSSK_					0	0	0		nc|ENSG00000136153|Q8WWI1-3|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8170776367188	2	531.81693	1061.61931	0.08187	4.354E-05	-0.95169	-0.00050613	-0.86982	-0.00046259	531.8169976703119	81.396	1.1136	81.465	81.097	82.211	0.068985					184	52	6	0	0	0	0.31417	1	21161	21161		6.7232	6.7232	1	1960300			22281	12715	12431	12432	28477	28477					0.09096219254638527
LEKVFGSCP	9	Unmodified	_LEKVFGSCP_					0	0	0		ENSG00000183527|ENST00000331573|PSMG1;PSMG1|p.E207Dfs*5|1|0.15|ENSG00000183527|chr21:39178483-39178483|T/-|frameshift_variant;ENST00000411828.5_1_21:40547518-40555177:-|nuORF	ENSG00000183527|ENST00000331573|PSMG1	ENSG00000183527|ENST00000331573|PSMG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2769470214844	2	490.249503	978.484453	0.74753	0.00036648	1.4785	0.00072485	2.2261	0.0010913	490.251236887241	33.992	0.41069	33.992	33.753	34.164	0					28	14	3	0	0	0	0.24848	1	6640	6640		13.906	1.3745	1	114530			22282	7374	12432	12433	28478	28478					-0.005649772114907137
LEKVLNQEKLR	11	Unmodified	_LEKVLNQEKLR_					0	0	0			REV__ENSG00000100084|ENST00000263208|HIRA	REV__ENSG00000100084|ENST00000263208|HIRA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.276611328125	3	457.276909	1368.8089	-0.15708	-7.183E-05	-0.077054	-3.5235E-05	-0.23414	-0.00010707	457.27718879543664	96.292	1.5449	96.292	95.648	97.193	0					324	149	3	0	0	0	0.33336	1	25693	25693		0.36667	0	1	905660	+		22283	14157	12433	12434	28479	28479					0.13924666477123537
LEKVPFAL	8	Unmodified	_LEKVPFAL_					0	0	0			REV__ENSG00000212123|ENST00000419421|PRR22	REV__ENSG00000212123|ENST00000419421|PRR22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.27740478515625	2	458.778754	915.542954	-0.27705	-0.0001271	0.42801	0.00019636	0.15096	6.9259E-05	458.778937709082	12.571	0.20289	12.503	12.345	12.548	-0.06806					11	6	3	0	0	0	0.3439	1	168	168		2.8892	0	1	89606	+		22284	19027	12434	12435	28480	28480					0.08180447425286275
LELFGTIL	8	Unmodified	_LELFGTIL_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2707824707031	2	453.270761	904.52697	0.19635	8.8998E-05	0.018971	8.5988E-06	0.21532	9.7597E-05	453.27063950847423	74.893	1.0885	74.946	74.64	75.729	0.052368					99	39	4	0	0	0	0.16192	1	19262	19262		49.669	0	1	3023600			22285	4871	12435	12436	28481	28481					0.07088741188397307
LELFGTIL	8	Unmodified	_LELFGTIL_					0	0	0		nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.27069091796875	2	453.270761	904.52697	0.46561	0.00021105	-0.27113	-0.0001229	0.19447	8.815E-05	453.27053216584613	74.997	1.1604	74.966	74.642	75.803	-0.031487					107	42	4	0	0	0	0.16192	1	19291	19291		49.669	0	1	3292200			22286	4871	12435	12436	28482	28482					0.07088741188397307
LELFHVFYF	9	Unmodified	_LELFHVFYF_					0	0	0			REV__ENST00000517937.1_1_6:56599965-56716690:-|nuORF	REV__ENST00000517937.1_1_6:56599965-56716690:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.1534423828125	3	405.546337	1213.61718	-1.4132	-0.00057312	-0.30681	-0.00012443	-1.72	-0.00069755	405.54635793020196	34.624	0.80424	34.699	34.212	35.017	0.075306					62	28	3	0	0	0	0.25689	1	6889	6889		4.5289	0.94181	1	207370	+		22287	21860	12436	12437	28483	28483					0.018917905168109428
LELGQVPLS	9	Unmodified	_LELGQVPLS_					0	0	0		nc|ENSG00000142273|Q9ULV8-2|CBLC;ENSG00000142273|ENST00000647358|CBLC	nc|ENSG00000142273|Q9ULV8-2|CBLC	nc|ENSG00000142273|Q9ULV8-2|CBLC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.80535888671875	2	478.276575	954.538597	-1.1904	-0.00056936	0.27077	0.0001295	-0.91968	-0.00043986	478.2764600491459	34.994	0.47588	34.994	34.751	35.227	0					22	16	2	0	0	0	0.25527	1	6904	6904		8.7454	0	1	128730			22288	4434	12437	12438	28484	28484					0.0595093821170849
LELHDSGTF	9	Unmodified	_LELHDSGTF_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3390197753906	2	509.745639	1017.47673	0.32334	0.00016482	1.9437	0.00099078	2.267	0.0011556	509.7473252137776	67.919	0.16114	67.919	67.809	67.97	0					6	4	2	0	0	0	0.19839	1	17076	17076		15.847	0	1	79499			22289	7500	12438	12439	28485	28485					-0.03131413207404421
LELKIETHDAL	11	Unmodified	_LELKIETHDAL_					0	0	0			REV__L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|24|1|sense	REV__L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|24|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.35400390625	2	641.356085	1280.69762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.71	1	106.71	106.21	107.21	-0.0060425								0	0	0	0.36335	1	28201	28201		5.2969	2.0156	1		+		22290	22820	12439	12440	28486	28486					0.06849607049207407
LELLKPIIPCL	11	Unmodified	_LELLKPIIPCL_					0	0	0			REV__ENSG00000095627|ENST00000695399|TDRD1	REV__ENSG00000095627|ENST00000695399|TDRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.8893432617188	2	626.390885	1250.76722	-0.19685	-0.00012331	-2.5345	-0.0015876	-2.7314	-0.0017109	626.390739892774	103.2	0.63878	103.2	102.85	103.49	0.0082703					150	92	2	0	0	0	0.46277	2	27475	27475;27483		2.9952	0	1	18562000	+		22291	14106	12440	12441	28487;28488	28487					0.15186394464262776
LELLKPIIPCL	11	Unmodified	_LELLKPIIPCL_					0	0	0			REV__ENSG00000095627|ENST00000695399|TDRD1	REV__ENSG00000095627|ENST00000695399|TDRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.3905639648438	2	626.390885	1250.76722	-0.197	-0.0001234	-2.766	-0.0017326	-2.963	-0.001856	626.3902200647791	103.6	0.73158	103.61	103.47	104.2	0.0082626					136	101	2	0	0	0	0.46277	1	27512	27512		2.9952	0	1	16168000	+		22292	14106	12440	12441	28489	28489					0.15186394464262776
LELLKPIIPCL	11	Unmodified	_LELLKPIIPCL_					0	0	0			REV__ENSG00000095627|ENST00000695399|TDRD1	REV__ENSG00000095627|ENST00000695399|TDRD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.3900146484375	2	626.390885	1250.76722	-0.19685	-0.00012331	-2.5345	-0.0015876	-2.7314	-0.0017109	626.390739892774	103.2	0.63878	103.2	102.85	103.49	0.0082703					150	92	2	0	0	0	0.33255	1	27391	27391		2.9952	0	1	18562000	+		22293	14106	12440	12441	28490	28490					0.15186394464262776
LELLKPIIPCL	11	Unmodified	_LELLKPIIPCL_					0	0	0			REV__ENSG00000095627|ENST00000695399|TDRD1	REV__ENSG00000095627|ENST00000695399|TDRD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.3872680664062	2	626.390885	1250.76722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.34	1	104.34	103.84	104.84	0.0011444								0	0	0	0.37382	1	27735	27735		2.9952	0.26005	1		+		22294	14106	12440	12441	28491	28491					0.15186394464262776
LELRLTPR	8	Unmodified	_LELRLTPR_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.29315185546875	2	499.311284	996.608014	0.16059	8.0184E-05	-0.45276	-0.00022607	-0.29217	-0.00014588	499.3110244374311	17.975	0.46443	17.915	17.704	18.169	-0.060429					30	16	2	0	0	0	0.344	1	1739	1739		2.5775	2.5775	1	95639	+		22295	18852	12441	12442	28492	28492					0.10957441951131841
LELRQRYGKRL	11	Unmodified	_LELRQRYGKRL_					0	0	0			REV__ENSG00000001626|ENST00000003084|CFTR	REV__ENSG00000001626|ENST00000003084|CFTR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.271728515625	3	477.956282	1430.84702	0.35903	0.0001716	-0.22029	-0.00010529	0.13874	6.6311E-05	477.9561634628376	40.111	1.2084	40.21	39.676	40.884	0.099403					121	43	4	0	0	0	0.33263	1	8692	8692		3.8459	2.6311	1	3552500	+		22296	13317	12442	12443	28493	28493					0.14882597182440804
LELTRLLPL	9	Unmodified	_LELTRLLPL_					0	0	0		ENSG00000162771|ENST00000294829|GARIN4;ENSG00000180219|ENST00000324341|GARIN6;ENSG00000170613|ENST00000302938|GARIN3	ENSG00000162771|ENST00000294829|GARIN4	ENSG00000162771|ENST00000294829|GARIN4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7994384765625	2	534.344792	1066.67503	0.296	0.00015816	0.35783	0.0001912	0.65382	0.00034937	534.345162619488	49.432	0.3824	49.477	49.238	49.621	0.044891					25	13	3	0	0	0	0.24848	1	11345	11345		9.3831	0.63772	1	142940			22297	5615	12443	12444	28494	28494					0.1443605244223818
LELWVNYYI	9	Unmodified	_LELWVNYYI_					0	0	0		ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1	ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.55255126953125	3	404.881497	1211.62266	-0.35612	-0.00014419	0.90047	0.00036458	0.54436	0.0002204	404.8818085691478	22.902	0.5984	22.815	22.54	23.138	-0.087608					36	20	2	0	0	0	0.25612	1	3272	3272		2.4985	0.41248	1	104650			22298	6510	12444	12445	28495	28495					0.025314693086102125
LEMAENIFF	9	Unmodified	_LEMAENIFF_					0	0	0			REV__ENSG00000145632|ENST00000274289|PLK2	REV__ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2742919921875	2	557.267893	1112.52123	0.72047	0.00040149	0.47255	0.00026333	1.193	0.00066483	557.2678145126466	77.996	2.0755	77.996	77.336	79.411	0					210	80	4	0	0	0	0.25989	1	20318	20318		14.838	0	1	1488400	+		22299	16297	12445	12446	28496	28496					-0.030527253855780145
LEMAENIFF	9	Unmodified	_LEMAENIFF_					0	0	0			REV__ENSG00000145632|ENST00000274289|PLK2	REV__ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2740478515625	2	557.267893	1112.52123	0.6584	0.00036691	0.51229	0.00028548	1.1707	0.00065239	557.2678685018848	77.982	2.7059	78.041	77.316	80.022	0.058151					245	105	5	0	0	0	0.31038	1	20498	20498		7.2892	2.5332	1	1692400	+		22300	16297	12445	12446	28497	28497					-0.030527253855780145
LEMAIGLL	8	Unmodified	_LEMAIGLL_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.2514343261719	2	430.251514	858.488476	-0.15824	-6.8081E-05	0.18027	7.756E-05	0.022031	9.479E-06	430.2514686267879	73.202	0.8229	73.256	72.871	73.694	0.053833					64	29	3	0	0	0	0.34131	1	18713	18713		12.532	0	1	502840	+		22301	18733	12446	12447	28498	28498					0.05357112282217713
LEMAQKGVLHA	11	Unmodified	_LEMAQKGVLHA_					0	0	0		ENSG00000007171|ENST00000313735|NOS2;nc|ENSG00000007171|P35228-2|NOS2	ENSG00000007171|ENST00000313735|NOS2	ENSG00000007171|ENST00000313735|NOS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.8196411132812	2	598.82644	1195.63833	0.98277	0.00058851	0.7038	0.00042145	1.6866	0.00101	599.3289077038565	56.504	1.8774	56.485	55.349	57.227	-0.019077					238	68	5	0	0	0	0.39802	1	13702	13702		11.495	0	1	6939100			22302	372	12447	12448	28499	28499					0.0483343255402815
LEMFSQIPL	9	Unmodified	_LEMFSQIPL_					0	0	0		ENST00000518720.5_1_8:143447309-143484530:-|nuORF	ENST00000518720.5_1_8:143447309-143484530:-|nuORF	ENST00000518720.5_1_8:143447309-143484530:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2838745117188	2	539.286085	1076.55762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.96	1	105.96	105.46	106.46	0								0	0	0	0.25499	1	28033	28033		4.756	0.42677	1				22303	11447	12448	12449	28500	28500					0.022401515111369008
LEMFSQIPL	9	Unmodified	_LEMFSQIPL_					0	0	0		ENST00000518720.5_1_8:143447309-143484530:-|nuORF	ENST00000518720.5_1_8:143447309-143484530:-|nuORF	ENST00000518720.5_1_8:143447309-143484530:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.2842407226562	2	539.286085	1076.55762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.99	1	119.02	118.52	119.52	0.026253								0	0	0	0.26334	1	30793	30793		2.0598	1.2661	1				22304	11447	12448	12449	28501	28501					0.022401515111369008
LEMTSFDME	9	Unmodified	_LEMTSFDME_					0	0	0			REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1	REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.2662963867188	2	551.7252	1101.43585	0.75988	0.00041924	-1.9322	-0.0010661	-1.1724	-0.00064682	551.7241202222122	77.329	0.49203	77.297	77.186	77.678	-0.031334					25	17	2	0	0	0	0.25706	1	19907	19907		6.7232	1.4925	1	144320	+		22305	16253	12449	12450	28502	28502					-0.11081258633566904
LENALQKAK	9	Unmodified	_LENALQKAK_					0	0	0		CON__Q0VBK2	CON__Q0VBK2	CON__Q0VBK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.80047607421875	2	507.800749	1013.58694	0.25397	0.00012897	-1.1323	-0.00057499	-0.87834	-0.00044602	507.80002941695346	24.452	1.1567	24.452	23.829	24.986	0					74	39	3	0	0	0	0.23612	1	3714	3714		18.373	2.224	1	143150		+	22306	224	12450	12451	28503	28503					0.08069431851617992
LENALTVRLS	10	Unmodified	_LENALTVRLS_					0	0	0		ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3247680664062	2	558.324588	1114.63462	0.36624	0.00020448	0.66408	0.00037077	1.0303	0.00057526	558.3246429415933	89.975	0.79398	89.975	89.69	90.484	0					163	66	3	0	0	0	0.38773	1	23948	23948		5.7319	0	1	381520			22307	8393	12451	12452	28504	28504					0.081890860518115
LENALTVRLS	10	Unmodified	_LENALTVRLS_					0	0	0		ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.32568359375	2	558.324588	1114.63462	0.37172	0.00020754	0.51748	0.00028892	0.8892	0.00049646	558.3245913787237	89.91	0.75346	89.91	89.638	90.391	0.00039673					134	63	3	0	0	0	0.38773	1	23935	23935		5.7319	0	1	421460			22308	8393	12451	12452	28505	28505					0.081890860518115
LENDSHDYIF	10	Unmodified	_LENDSHDYIF_					0	0	0		nc|ENSG00000140471|Q8NG48-2|LINS1;nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;ENSG00000140471|ENST00000314742|LINS1;ENST00000561073.1_1_15:101116892-101121059:-|nuORF	nc|ENSG00000140471|Q8NG48-2|LINS1	nc|ENSG00000140471|Q8NG48-2|LINS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.1874694824219	3	418.187537	1251.54078	0.19128	7.9991E-05	0.41189	0.00017225	0.60317	0.00025224	418.18756992090647	53.793	0.61972	53.793	53.542	54.162	0					55	22	4	0	0	0	0.3641	1	12770	12770		5.7834	0	1	536080			22309	12728	12452	12453	28506	28506					-0.07492677841150908
LENDSHDYIF	10	Unmodified	_LENDSHDYIF_					0	0	0		nc|ENSG00000140471|Q8NG48-2|LINS1;nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;ENSG00000140471|ENST00000314742|LINS1;ENST00000561073.1_1_15:101116892-101121059:-|nuORF	nc|ENSG00000140471|Q8NG48-2|LINS1	nc|ENSG00000140471|Q8NG48-2|LINS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.187744140625	3	418.187537	1251.54078	0.27647	0.00011562	0.19998	8.363E-05	0.47645	0.00019925	418.1876308395943	53.955	0.54416	53.944	53.743	54.287	-0.010918					34	19	2	0	0	0	0.3641	1	12795	12795		5.7834	0	1	450040			22310	12728	12452	12453	28507	28507					-0.07492677841150908
LENLVLPADL	10	Unmodified	_LENLVLPADL_					0	0	0		ENST00000282120.6_1_2:85549729-85549831:-|nuORF	ENST00000282120.6_1_2:85549729-85549831:-|nuORF	ENST00000282120.6_1_2:85549729-85549831:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7872924804688	2	548.816064	1095.61758	0.69025	0.00037882	-3.8313	-0.0021027	-3.1411	-0.0017239	548.814268773354	72.422	0.12817	72.479	72.384	72.513	0.056572					6	4	2	0	0	0	0.31039	1	18454	18454		13.042	0	1	55915			22311	9124	12453	12454	28508	28508					0.07359165445973304
LENNTHMD	8	Unmodified	_LENNTHMD_					0	0	0			REV__nc|ENSG00000144893|Q86YW9-4|MED12L	REV__nc|ENSG00000144893|Q86YW9-4|MED12L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.79095458984375	2	487.205824	972.397095	0.45196	0.0002202	-2.4475	-0.0011924	-1.9955	-0.00097222	487.2047107908717	72.999	0.46986	72.97	72.684	73.153	-0.029305					21	16	2	0	0	0	0.34294	1	18610	18610		7.2892	2.0586	1	61566	+		22312	16269	12454	12455	28509	28509					-0.0902080315307785
LENQSSKANL	10	Unmodified	_LENQSSKANL_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2556762695312	2	552.288202	1102.56185	0.59104	0.00032642	-4.2528	-0.0023488	-3.6618	-0.0020224	552.2848170978369	64.119	0.13577	64.11	64.017	64.152	-0.0095291					5	4	2	0	0	0	0.31696	1	15899	15899		6.6304	0	1	52148			22313	659	12455	12456	28510	28510					0.014673322583803383
LENRKCQQHF	10	Unmodified	_LENRKCQQHF_					0	0	0			REV__ENSG00000160211|ENST00000393562|G6PD	REV__ENSG00000160211|ENST00000393562|G6PD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7801208496094	3	434.883906	1301.62989	0.33611	0.00014617	1.6106	0.0007004	1.9467	0.00084657	435.22002146402383	36.676	0.84483	36.769	36.377	37.222	0.093014					71	30	4	0	0	0	0.3183	1	7365	7365		3.0723	2.3746	1	313790	+		22314	16887	12456	12457	28511	28511					-0.008861213626232711
LENSEELLF	9	Unmodified	_LENSEELLF_					0	0	0		ENST00000555815.5_1_15:25924490-25961922:-|nuORF;ENSG00000206190|ENST00000555815|ATP10A	ENST00000555815.5_1_15:25924490-25961922:-|nuORF	ENST00000555815.5_1_15:25924490-25961922:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7633056640625	2	547.274229	1092.53391	0.37237	0.00020379	1.5587	0.00085304	1.9311	0.0010568	547.2749720457527	42.668	0.31894	42.753	42.487	42.806	0.085201					16	11	2	0	0	0	0.22061	1	9276	9276		18.146	0	1	165660			22315	8316	12457	12458	28512	28512					-0.008659907217179352
LENVYGPTCI	10	Unmodified	_LENVYGPTCI_					0	0	0		ENST00000265717.4_1_7:106801426-106801522:+|nuORF	ENST00000265717.4_1_7:106801426-106801522:+|nuORF	ENST00000265717.4_1_7:106801426-106801522:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.7708129882812	2	554.7708	1107.52705	0.47705	0.00026465	-0.31666	-0.00017568	0.16038	8.8975E-05	554.770584317296	65.643	1.0537	65.643	65.157	66.211	0					79	37	3	0	0	0	0.24359	1	16398	16398		31.268	4.3847	1	962710			22316	9052	12458	12459	28513	28513					-0.022416268739334555
LENWSLQIT	9	Unmodified	_LENWSLQIT_					0	0	0		ENST00000374279.3_1_9:114695195-114695291:+|nuORF	ENST00000374279.3_1_9:114695195-114695291:+|nuORF	ENST00000374279.3_1_9:114695195-114695291:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2578125	2	552.290214	1102.56587	0.48656	0.00026872	1.5826	0.00087405	2.0692	0.0011428	552.2912363837307	65.922	0.45145	65.91	65.641	66.093	-0.011719					26	15	2	0	0	0	0.21389	1	16387	16387		13.906	0	1	225170			22317	9890	12459	12460	28514	28514					0.018694217520987877
LEPDSIPIV	9	Unmodified	_LEPDSIPIV_					0	0	0			REV__nc|ENSG00000100796|Q6IN85-5|PPP4R3A	REV__nc|ENSG00000100796|Q6IN85-5|PPP4R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7765197753906	2	491.776408	981.538263	0.33954	0.00016698	1.3269	0.00065254	1.6664	0.00081952	491.776431254285	67.055	1.2196	67.055	66.341	67.561	0					75	42	3	0	0	0	0.28128	1	16791	16791		11.64	0.81637	1	329150	+		22318	14230	12460	12461	28515	28515					0.046755184918765735
LEPDSIPIV	9	Unmodified	_LEPDSIPIV_					0	0	0			REV__nc|ENSG00000100796|Q6IN85-5|PPP4R3A	REV__nc|ENSG00000100796|Q6IN85-5|PPP4R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7764587402344	2	491.776408	981.538263	0.32264	0.00015867	0.93724	0.00046091	1.2599	0.00061958	491.7763835580665	67.003	1.1668	67.087	66.327	67.493	0.083832					63	41	2	0	0	0	0.12846	1	16749	16749		34.102	3.4659	1	398870	+		22319	14230	12460	12461	28516	28516					0.046755184918765735
LEPFDDKF	8	Unmodified	_LEPFDDKF_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3134460449219	2	505.745108	1009.47566	0.14361	7.263E-05	-2.1177	-0.001071	-1.9741	-0.0009984	505.7430206262638	25.943	0.16292	25.943	25.846	26.009	0					8	5	2	0	0	0	0.34337	1	4181	4181		5.2307	0	1	57505	+		22320	17870	12461	12462	28517	28517					-0.02869627576330913
LEPFDTSSL	9	Unmodified	_LEPFDTSSL_					0	0	0			REV__ENSG00000169071|ENST00000375708|ROR2	REV__ENSG00000169071|ENST00000375708|ROR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2770690917969	2	504.747847	1007.48114	0.57157	0.0002885	1.5115	0.00076292	2.0831	0.0010514	504.748449360284	54.159	0.304	54.159	53.884	54.188	0					14	10	2	0	0	0	0.2451	1	12815	12815		10.824	4.1008	1	115910	+		22321	17496	12462	12463	28518	28518					-0.022299487844975374
LEPGMRRLQ	9	Unmodified	_LEPGMRRLQ_					0	0	0		AluSx3_dup21502|chr12:52105472-52105782:+|1.627852841111601|0.2686952727547708|2.6|536.0|13|3|sense	AluSx3_dup21502|chr12:52105472-52105782:+|1.627852841111601|0.2686952727547708|2.6|536.0|13|3|sense	AluSx3_dup21502|chr12:52105472-52105782:+|1.627852841111601|0.2686952727547708|2.6|536.0|13|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3060913085938	2	550.305675	1098.5968	0.40315	0.00022185	1.2728	0.00070043	1.6759	0.00092228	550.3056641773541	19.527	0.59841	19.471	19.08	19.678	-0.055693					45	20	3	0	0	0	0.31763	1	2298	2298		6.2058	0	1	149480			22322	38	12463	12464	28519	28519					0.05144296585331176
LEPHLLIK	8	Unmodified	_LEPHLLIK_					0	0	0		ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2818298339844	2	481.805303	961.596052	0.43229	0.00020828	0.077362	3.7273E-05	0.50965	0.00024555	481.8053167508255	36.848	0.3638	36.848	36.7	37.063	0					19	12	2	0	0	0	0.34131	1	7519	7519		12.532	0	1	94956			22323	8395	12464	12465	28520	28520					0.11371825207959319
LEPHNAGLF	9	Unmodified	_LEPHNAGLF_					0	0	0		ENST00000588475.1_1_18:13666687-13682076:-|nuORF;ENSG00000177150|ENST00000651643|FAM210A	ENST00000588475.1_1_18:13666687-13682076:-|nuORF	ENST00000588475.1_1_18:13666687-13682076:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.25921630859375	2	499.258717	996.50288	0.59054	0.00029483	-0.14228	-7.1036E-05	0.44826	0.0002238	499.2592235829054	55.339	3.2094	55.41	55.028	58.237	0.070885					312	118	5	0	0	0	0.051692	1	13356	13356		52.268	8.496	1	75175000			22324	6965	12465	12466	28521	28521					0.0044890075471357704
LEPLFSFDQ	9	Unmodified	_LEPLFSFDQ_					0	0	0			REV__ENSG00000168306|ENST00000302819|ACOX2	REV__ENSG00000168306|ENST00000302819|ACOX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3356323242188	2	548.27149	1094.52843	0.26656	0.00014615	-0.077572	-4.253E-05	0.18898	0.00010361	548.7727433151067	22.36	0.17038	22.312	22.235	22.406	-0.047915					7	5	2	0	0	0	0.25988	1	3107	3107		3.9444	0	1	28395	+		22325	17451	12466	12467	28522	28522					-0.015056695135399423
LEPLHLHF	8	Unmodified	_LEPLHLHF_					0	0	0			REV__ENSG00000258405|ENST00000421239|ZNF578	REV__ENSG00000258405|ENST00000421239|ZNF578	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.290283203125	2	503.279452	1004.54435	0.33036	0.00016627	-0.56291	-0.0002833	-0.23255	-0.00011704	503.2793142951993	57.869	1.1865	57.869	57.552	58.739	0					100	41	4	0	0	0	0.42446	1	14242	14242		14.582	0	1	711160	+		22326	19268	12467	12468	28523	28523					0.04226081514048019
LEPLMPAVL	9	Unmodified	_LEPLMPAVL_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;ENST00000483991.5_1_9:138703157-138717996:-|nuORF	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7854309082031	2	491.785721	981.55689	0.3957	0.0001946	0.21074	0.00010364	0.60645	0.00029824	491.7854770904468	68.968	0.79861	68.968	68.541	69.339	0					45	28	3	0	0	0	0.23775	1	17369	17369		18.135	0	1	260110			22327	3486	12468	12469	28524	28524					0.06537356862065735
LEPMEEKLVVL	11	Unmodified	_LEPMEEKLVVL_					0	0	0		nc|ENSG00000090512|Q9UGM5-2|FETUB;ENSG00000090512|ENST00000265029|FETUB	nc|ENSG00000090512|Q9UGM5-2|FETUB	nc|ENSG00000090512|Q9UGM5-2|FETUB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.9128723144531	3	433.912468	1298.71558	-0.39433	-0.0001711	0.58914	0.00025563	0.19481	8.453E-05	433.9127611537505	14.907	0.71253	14.907	14.701	15.413	0					69	24	4	0	0	0	0.3287	1	864	864		12.228	12.228	1	299990			22328	1379	12469	12470	28525	28525					0.0781660597967857
LEPPTPQIP	9	Unmodified	_LEPPTPQIP_					0	0	0		ENSG00000105122|ENST00000343625|RASAL3;nc|ENSG00000105122|Q86YV0-2|RASAL3;ENST00000602101.6_1_19:15568751-15575169:-|nuORF	ENSG00000105122|ENST00000343625|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7500305175781	2	496.276575	990.538597	0.28081	0.00013936	-1.7761	-0.00088142	-1.4953	-0.00074206	496.27551258092024	69.752	0.69392	69.818	69.548	70.242	0.06604					37	24	2	0	0	0	0.24848	1	17568	17568		13.906	2.2658	1	162720			22329	1946	12470	12471	28526	28526					0.04294938211717181
LEPRRRPR	8	Unmodified	_LEPRRRPR_					0	0	0			REV__ENSG00000181481|ENST00000328381|RNF135	REV__ENSG00000181481|ENST00000328381|RNF135	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3483276367188	2	540.330873	1078.64719	0.5772	0.00031188	-1.537	-0.0008305	-0.95982	-0.00051862	540.8317359972914	96.345	0.17842	96.342	96.238	96.417	-0.0038147					25	16	2	0	0	0	0.34218	1	25744	25744		5.2307	0	1	62778	+		22330	18151	12471	12472	28527	28527					0.1110158702535955
LEPSFRQAF	9	Unmodified	_LEPSFRQAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7857666015625	2	547.785099	1093.55564	0.66258	0.00036295	0.56854	0.00031144	1.2311	0.00067439	547.7853268081827	51.008	0.85088	51.055	50.822	51.672	0.046574					64	31	3	0	0	0	0.15219	1	11888	11888		30.637	0	1	1010200			22331	8613	12472	12473	28528	28528					0.012608588175226032
LEPSNAQEFL	10	Unmodified	_LEPSNAQEFL_					0	0	0		ENSG00000179300|ENST00000321110|RTL3	ENSG00000179300|ENST00000321110|RTL3	ENSG00000179300|ENST00000321110|RTL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.285400390625	2	574.285128	1146.5557	0.14826	8.5143E-05	0.35198	0.00020213	0.50024	0.00028728	574.2852610773697	26.786	0.4495	26.786	26.558	27.007	0					30	15	3	0	0	0	0.37751	1	4478	4478		7.609	0.88579	1	145920			22332	7116	12473	12474	28529	28529					-0.01171185973134925
LEQAGARQVLR	11	Unmodified	_LEQAGARQVLR_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.8948059082031	3	414.242199	1239.70477	0.093211	3.8612E-05	0.11581	4.7975E-05	0.20902	8.6586E-05	414.241988666015	21.041	0.74622	21.041	20.798	21.545	0					60	25	3	0	0	0	0.33025	1	2714	2714		9.2438	1.2984	1	188250			22333	3128	12474	12475	28530	28530					0.09450384440265225
LEQANITGN	9	Unmodified	_LEQANITGN_					0	0	0			REV__ENSG00000178372|ENST00000380332|CALML5	REV__ENSG00000178372|ENST00000380332|CALML5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2525634765625	2	480.243264	958.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.636	1	27.636	27.136	28.136	0								0	0	0	0.2362	1	4716	4716		10.824	1.4408	1		+		22334	18032	12475	12476	28531	28531					-0.008922973501853448
LEQGDKQK	8	Unmodified	_LEQGDKQK_					0	0	0			REV__ENST00000590378.5_1_19:10197589-10200348:+|nuORF	REV__ENST00000590378.5_1_19:10197589-10200348:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2689208984375	2	473.253631	944.49271	-0.19338	-9.1518E-05	2.4793	0.0011733	2.2859	0.0010818	473.25468728723433	14.651	0.61757	14.651	14.307	14.925	0					36	21	3	0	0	0	0.43302	1	791	791		11.64	0.81637	1	89500	+		22335	15481	12476	12477	28532	28532					0.01824293029483215
LEQKAVLEQ	9	Unmodified	_LEQKAVLEQ_					0	0	0		ENST00000531150.5_1_1:26508531-26510633:+|nuORF;ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1	ENST00000531150.5_1_1:26508531-26510633:+|nuORF	ENST00000531150.5_1_1:26508531-26510633:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.298583984375	2	529.298039	1056.58152	0.51126	0.00027061	1.1306	0.00059844	1.6419	0.00086905	529.2998728455866	24.02	0.82676	23.981	23.592	24.418	-0.038927					74	28	5	0	0	0	0.25714	1	3668	3668		15.248	2.7169	1	324810			22336	4459	12477	12478	28533	28533					0.0554970826913177
LEQLIDQKL	9	Unmodified	_LEQLIDQKL_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1;ENST00000495918.1_1_1:183103830-183107010:+|nuORF	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3092041015625	2	550.321514	1098.62847	0.036991	2.0357E-05	1.255	0.00069063	1.2919	0.00071099	550.322259855935	27.89	0.44895	27.89	27.732	28.181	0					27	15	2	0	0	0	0.25112	1	4789	4789		16.149	3.1066	1	66320			22337	3913	12478	12479	28534	28534					0.08310567820285542
LEQLIDQKL	9	Unmodified	_LEQLIDQKL_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1;ENST00000495918.1_1_1:183103830-183107010:+|nuORF	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	550.321514	1098.62847	0.12357	6.8005E-05	1.5452	0.00085034	1.6688	0.00091835	550.3225299597551	27.905	0.64618	27.9	27.632	28.278	-0.0042572	0.0054159	0.00020112	NaN	16.149	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93253			22338	3913	12478	12479							0.08310567820285542
LEQLKPDSRS	10	Unmodified	_LEQLKPDSRS_					0	0	0			REV__nc|ENSG00000197702|Q9NVD7-2|PARVA	REV__nc|ENSG00000197702|Q9NVD7-2|PARVA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.834228515625	2	586.817127	1171.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.235	1	80.235	79.735	80.735	0								0	0	0	0.35788	1	20843	20843		11.495	2.1116	1		+		22339	18758	12479	12480	28535	28535					0.04075594183791509
LEQQRRHEL	9	Unmodified	_LEQQRRHEL_					0	0	0			REV__ENST00000505350.1_1_5:112043362-112090604:+|nuORF	REV__ENST00000505350.1_1_5:112043362-112090604:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.5545654296875	3	403.554666	1207.64217	-0.4789	-0.00019326	-0.093854	-3.7875E-05	-0.57275	-0.00023114	403.5547519385363	13.925	0.51878	13.859	13.687	14.206	-0.066068					41	17	3	0	0	0	0.2524	1	569	569		11.495	0	1	251700	+		22340	21741	12480	12481	28536	28536					0.04665238372103886
LEQRGLAK	8	Unmodified	_LEQRGLAK_					0	0	0		ACIN1|p.P817Hfs*53|1|0.19|ENSG00000100813|chr14:23065992-23065998|GATTTGG/-|frameshift_variant;ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1	ACIN1|p.P817Hfs*53|1|0.19|ENSG00000100813|chr14:23065992-23065998|GATTTGG/-|frameshift_variant	ACIN1|p.P817Hfs*53|1|0.19|ENSG00000100813|chr14:23065992-23065998|GATTTGG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.16412353515625	2	457.774534	913.534515	-0.023291	-1.0662E-05	0.90998	0.00041656	0.88668	0.0004059	457.77530698021116	26.273	0.27331	26.234	26.069	26.342	-0.038671					24	9	3	0	0	0	0.33245	1	4280	4280		13.508	4.1604	1	109180			22341	5	12481	12482	28537	28537					0.07428893508676992
LEQRIRDAEL	10	Unmodified	_LEQRIRDAEL_					0	0	0			REV__ENSG00000180423|ENST00000326737|HARBI1	REV__ENSG00000180423|ENST00000326737|HARBI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.8438720703125	2	621.843676	1241.6728	-0.10268	-6.385E-05	0.4223	0.00026261	0.31963	0.00019876	621.8437862991209	18.273	0.36737	18.156	17.957	18.325	-0.11739					23	12	2	0	0	0	0.4022	1	1871	1871		1.1933	0	1	81038	+		22342	18109	12482	12483	28538	28538					0.06162971966477926
LEQRNILKP	9	Unmodified	_LEQRNILKP_					0	0	0		ENSG00000112137|ENST00000332995|PHACTR1	ENSG00000112137|ENST00000332995|PHACTR1	ENSG00000112137|ENST00000332995|PHACTR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2802734375	2	555.835123	1109.65569	0.59551	0.00033101	-0.19682	-0.0001094	0.39869	0.00022161	555.8351229701688	45.46	0.31577	45.52	45.361	45.677	0.059834					17	10	2	0	0	0	0.23784	1	10175	10175		13.906	5.1606	1	201980			22343	2413	12483	12484	28539	28539					0.10525096151332036
LEQRRAQG	8	Unmodified	_LEQRRAQG_					0	0	0		ENSG00000197993|ENST00000355265|KEL;ENST00000479768.6_1_7:142643674-142659293:-|nuORF	ENSG00000197993|ENST00000355265|KEL	ENSG00000197993|ENST00000355265|KEL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2649230957031	2	479.264865	956.515176	-0.081903	-3.9253E-05	0.45393	0.00021755	0.37203	0.0001783	479.2648726029181	14.178	0.47769	14.112	13.977	14.455	-0.066068					31	16	3	0	0	0	0.44569	1	669	669		7.2892	2.0586	1	117600			22344	8022	12484	12485	28540	28540					0.035179372177594814
LEQTSQQFT	9	Unmodified	_LEQTSQQFT_					0	0	0			REV__nc|ENSG00000079385|P13688-3|CEACAM1	REV__nc|ENSG00000079385|P13688-3|CEACAM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.263916015625	2	541.261653	1080.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.21	1	100.25	99.752	100.75	0.038994								0	0	0	0.25631	1	26785	26785		4.3292	0.38484	1		+		22345	13869	12485	12486	28541	28541					-0.028280455242793323
LERAALLVQ	9	Unmodified	_LERAALLVQ_					0	0	0			REV__ZBTB48|p.C383Sfs*11|1|0.32|ENSG00000204859|chr1:6587208-6587220|TCCTCCTGCTCCC/-|frameshift_variant	REV__ZBTB48|p.C383Sfs*11|1|0.32|ENSG00000204859|chr1:6587208-6587220|TCCTCCTGCTCCC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2773132324219	2	506.811116	1011.60768	0.35637	0.00018061	0.10071	5.1039E-05	0.45708	0.00023165	506.8110391857669	48.941	1.1716	48.986	48.629	49.801	0.044891					87	42	3	0	0	0	0.20651	1	11445	11445		14.838	0	1	3163200	+		22346	18969	12486	12487	28542	28542					0.1023402223128187
LERALARLE	9	Unmodified	_LERALARLE_					0	0	0		nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B;nc|ENSG00000089177|Q96L93-2|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8206787109375	2	535.819473	1069.62439	0.48726	0.00026109	1.2932	0.00069294	1.7805	0.00095403	535.8200704471295	45.049	1.1161	45.118	44.627	45.743	0.068569					90	39	4	0	0	0	0.26278	1	10120	10120		14.405	1.3629	1	1833200			22347	1352	12487	12488	28543	28543					0.09236523117260731
LERDDNPSL	9	Unmodified	_LERDDNPSL_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4;ENSG00000102753|ENST00000261667|KPNA3	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2980346679688	2	529.759278	1057.504	0.377	0.00019972	-0.96116	-0.00050918	-0.58416	-0.00030947	530.2598768122643	66.876	0.2788	66.96	66.767	67.046	0.083832					10	9	2	0	0	0	0.23784	1	16730	16730		9.3831	0	1	121640			22348	7613	12488	12489	28544	28544					-0.022449296670401964
LERFVDLL	8	Unmodified	_LERFVDLL_					0	0	0			REV__ENSG00000163885|ENST00000352312|CFAP100	REV__ENSG00000163885|ENST00000352312|CFAP100	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7927551269531	2	502.792392	1003.57023	0.054792	2.7549E-05	1.2017	0.00060418	1.2564	0.00063173	502.7930382434117	81.525	0.45655	81.594	81.417	81.874	0.068993					33	19	2	0	0	0	0.43043	1	21280	21280		12.532	1.7076	1	336340	+		22349	17100	12489	12490	28545	28545					0.06858930965665877
LERKAQELI	9	Unmodified	_LERKAQELI_					0	0	0			REV__nc|ENSG00000257923|P39880-3|CUX1	REV__nc|ENSG00000257923|P39880-3|CUX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3273315429688	2	550.327131	1098.63971	0.2652	0.00014595	0.33428	0.00018396	0.59948	0.00032991	550.327148522034	34.235	0.50425	34.235	34.023	34.528	0					26	17	2	0	0	0	0.24247	1	6734	6734		17.443	1.704	1	151350	+		22350	23221	12490	12491	28546	28546					0.09433389914443069
LERKNIEIY	9	Unmodified	_LERKNIEIY_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3214111328125	2	589.332413	1176.65027	0.49194	0.00028991	0.40816	0.00024054	0.9001	0.00053046	589.3325307791816	38.568	0.42992	38.665	38.491	38.921	0.097527					28	15	2	0	0	0	0.24471	1	8027	8027		12.241	2.8575	1	236450			22351	374	12491	12492	28547	28547					0.06901372568859188
LERKNIEIY	9	Unmodified	_LERKNIEIY_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	589.332413	1176.65027	0.047269	2.7857E-05	0.96155	0.00056667	1.0088	0.00059453	589.332996650134	38.721	0.47021	38.721	38.46	38.931	0	0.030608	0.00044559	NaN	12.241	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270020			22352	374	12491	12492							0.06901372568859188
LERLLVGAFP	10	Unmodified	_LERLLVGAFP_					0	0	0		ENST00000605573.1_1_3:187871604-187871808:-|nuORF	ENST00000605573.1_1_3:187871604-187871808:-|nuORF	ENST00000605573.1_1_3:187871604-187871808:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.81640625	2	557.834591	1113.65463	0.61339	0.00034217	2.1205	0.0011829	2.7339	0.0015251	557.8356419721235	47.812	0.54493	47.859	47.349	47.893	0.047523					25	19	2	0	0	0	0.31267	1	10878	10878		14.838	0	1	662910			22353	12287	12492	12493	28548	28548					0.10234881782434968
LERNIERRIEE	11	Unmodified	_LERNIERRIEE_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7645568847656	3	486.267073	1455.77939	0.063839	3.1043E-05	0.3295	0.00016022	0.39334	0.00019127	486.26782732524	17.6	0.82885	17.482	17.289	18.117	-0.11739					45	28	4	0	0	0	0.33334	1	1825	1825		1.2148	0	1	70251			22354	3119	12493	12494	28549	28549					0.06973102461029157
LERNIERRIEE	11	Unmodified	_LERNIERRIEE_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	486.267073	1455.77939	0.22536	0.00010959	0.2836	0.0001379	0.50896	0.00024749	486.26741488120615	17.322	0.47367	17.322	17.186	17.66	0	-0.098716	7.6051E-05	NaN	1.2148	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63102			22355	3119	12493	12494							0.06973102461029157
LERNIERRIEE	11	Unmodified	_LERNIERRIEE_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	486.267073	1455.77939	0.27127	0.00013191	0.067335	3.2743E-05	0.3386	0.00016465	486.2674306911135	17.518	0.40701	17.457	17.211	17.618	-0.060429	0.036899	-0.00023943	NaN	1.2148	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52170			22356	3119	12493	12494							0.06973102461029157
LERPERGAAAG	11	Unmodified	_LERPERGAAAG_					0	0	0			REV__ENST00000338244.5_1_20:4951554-4982115:-|nuORF	REV__ENST00000338244.5_1_20:4951554-4982115:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8154296875	2	563.801811	1125.58907	0.20803	0.00011729	2.5006	0.0014098	2.7086	0.0015271	563.802855730645	31.546	0.361	31.589	31.322	31.683	0.042364					17	12	2	0	0	0	0.26921	1	5918	5918		24.991	2.2547	1	276730	+		22357	20092	12494	12495	28550	28550					0.031298605894335196
LERPKTLS	8	Unmodified	_LERPKTLS_					0	0	0		nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2;ENST00000341426.9_1_1:1682922-1683198:-|nuORF	nc|ENSG00000141736|P04626-5|ERBB2	nc|ENSG00000141736|P04626-5|ERBB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.752685546875	2	472.282192	942.549831	0.2989	0.00014117	-0.93876	-0.00044336	-0.63986	-0.00030219	472.281819173819	26.384	0.37128	26.362	26.185	26.556	-0.022238					18	12	2	0	0	0	0.32537	1	4331	4331		24.021	3.5669	1	107610			22358	4408	12495	12496	28551	28551					0.0762576030585933
LERRHKEP	8	Unmodified	_LERRHKEP_					0	0	0			REV__ENST00000172229.7_1_17:47591456-47591825:+|nuORF	REV__ENST00000172229.7_1_17:47591456-47591825:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.80224609375	2	532.801614	1063.58868	0.53606	0.00028561	-0.68157	-0.00036314	-0.14552	-7.7532E-05	532.8016364191747	19.61	0.80993	19.555	19.309	20.119	-0.055693					63	28	3	0	0	0	0.45431	1	2358	2358		4.3292	0.38484	1	166380	+		22359	19387	12496	12497	28552	28552					0.05942485660239072
LERRLKLL	8	Unmodified	_LERRLKLL_					0	0	0			REV__nc|ENSG00000002079|Q9H6N6|MYH16	REV__nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2896728515625	2	520.850576	1039.6866	0.60117	0.00031312	-0.2131	-0.00011099	0.38806	0.00020212	520.8504726129228	54.277	0.80046	54.34	54.063	54.863	0.063206					78	29	4	0	0	0	0.3366	1	12841	12841		18.135	0	1	1731900	+		22360	22874	12497	12498	28553	28553					0.16834294256227622
LERRLKLL	8	Unmodified	_LERRLKLL_					0	0	0			REV__nc|ENSG00000002079|Q9H6N6|MYH16	REV__nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.8507690429688	2	520.850576	1039.6866	0.59744	0.00031118	-0.1807	-9.4119E-05	0.41674	0.00021706	520.8504508185166	54.44	0.83638	54.424	54.17	55.006	-0.015923					64	29	4	0	0	0	0.41758	1	12944	12944		16.942	0	1	1443900	+		22361	22874	12497	12498	28554	28554					0.16834294256227622
LERRNGIF	8	Unmodified	_LERRNGIF_					0	0	0			REV__ENSG00000101361|ENST00000329276|NOP56	REV__ENSG00000101361|ENST00000329276|NOP56	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2647399902344	2	502.785433	1003.55631	0.41814	0.00021024	-0.11832	-5.9488E-05	0.29982	0.00015075	502.78647874077626	87.852	1.0876	87.849	87.403	88.491	-0.0028381					93	57	2	0	0	0	0.34092	1	23276	23276		8.5933	0	1	146770	+		22362	14268	12498	12499	28555	28555					0.054676982572459565
LERRPRPR	8	Unmodified	_LERRPRPR_					0	0	0			REV__nc|ENSG00000244486|Q96GP6|SCARF2	REV__nc|ENSG00000244486|Q96GP6|SCARF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3302001953125	2	540.330873	1078.64719	0.44642	0.00024121	-1.3256	-0.00071625	-0.87916	-0.00047504	540.3301631376033	82.105	0.72751	82.174	82.069	82.796	0.068993					55	29	3	0	0	0	0.45169	1	21564	21564		5.2307	0	1	198550	+		22363	23212	12499	12500	28556	28556					0.1110158702535955
LERRPRPR	8	Unmodified	_LERRPRPR_					0	0	0			REV__nc|ENSG00000244486|Q96GP6|SCARF2	REV__nc|ENSG00000244486|Q96GP6|SCARF2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	540.330873	1078.64719	0.66207	0.00035774	-1.3945	-0.00075347	-0.73239	-0.00039573	540.3298599711786	82.336	1.0938	82.316	82.113	83.207	-0.020584	0.071185	-2.994E-05	NaN	5.2307	79	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226940	+		22364	23212	12499	12500							0.1110158702535955
LERRRKRRHQK	11	Unmodified	_LERRRKRRHQK_					0	0	0		ENST00000233379.8_1_2:96079888-96080107:+|nuORF	ENST00000233379.8_1_2:96079888-96080107:+|nuORF	ENST00000233379.8_1_2:96079888-96080107:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.9917602539062	3	521.657341	1561.95019	0.56594	0.00029523	-0.14924	-7.7851E-05	0.41671	0.00021738	521.6572091274389	49.407	1.7667	49.407	49.105	50.872	0					223	64	5	0	0	0	0.48307	3	11475	11384;11427;11475		0.32927	0.24592	1	4508000			22365	8868	12500	12501	28557;28558;28559	28559					0.19169522413631057
LERRRKRRHQK	11	Unmodified	_LERRRKRRHQK_					0	0	0		ENST00000233379.8_1_2:96079888-96080107:+|nuORF	ENST00000233379.8_1_2:96079888-96080107:+|nuORF	ENST00000233379.8_1_2:96079888-96080107:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.6575927734375	3	521.657341	1561.95019	0.42944	0.00022402	-0.060321	-3.1467E-05	0.36912	0.00019255	521.6572401373753	49.477	2.1611	49.521	49.266	51.427	0.044888					220	80	5	0	0	0	0.48502	1	11426	11426		0.073264	0.073264	1	5425700			22366	8868	12500	12501	28560	28560					0.19169522413631057
LERRRKRRHQK	11	Unmodified	_LERRRKRRHQK_					0	0	0		ENST00000233379.8_1_2:96079888-96080107:+|nuORF	ENST00000233379.8_1_2:96079888-96080107:+|nuORF	ENST00000233379.8_1_2:96079888-96080107:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.6575927734375	3	521.657341	1561.95019	0.39151	0.00020423	0.0021738	1.134E-06	0.39368	0.00020537	521.6572893129421	49.544	1.7781	49.576	49.209	50.987	0.032043					204	65	5	0	0	0	0.48502	1	11419	11419		0.073264	0.073264	1	5055900			22367	8868	12500	12501	28561	28561					0.19169522413631057
LERTHFLS	8	Unmodified	_LERTHFLS_					0	0	0			REV__ENST00000536435.6_1_12:133779770-133780055:+|nuORF	REV__ENST00000536435.6_1_12:133779770-133780055:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2745056152344	2	501.771991	1001.52943	0.56727	0.00028464	0.03054	1.5324E-05	0.59781	0.00029997	501.77193619360935	40.582	0.56874	40.582	40.334	40.902	0					26	20	2	0	0	0	0.34092	1	8736	8736		13.508	0.97634	1	153780	+		22368	22082	12501	12502	28562	28562					0.028725896460514377
LERTHFLS	8	Unmodified	_LERTHFLS_					0	0	0			REV__ENST00000536435.6_1_12:133779770-133780055:+|nuORF	REV__ENST00000536435.6_1_12:133779770-133780055:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	501.771991	1001.52943	0.55099	0.00027647	-0.38007	-0.00019071	0.17092	8.5762E-05	501.7717480884855	40.281	0.49287	40.374	40.2	40.693	0.09267	-0.061967	-0.00021848	NaN	13.508	27	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164480	+		22369	22082	12501	12502							0.028725896460514377
LERTHFLS	8	Unmodified	_LERTHFLS_					0	0	0			REV__ENST00000536435.6_1_12:133779770-133780055:+|nuORF	REV__ENST00000536435.6_1_12:133779770-133780055:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	501.771991	1001.52943	0.48686	0.00024429	-0.10592	-5.3148E-05	0.38094	0.00019115	501.77201028609545	40.252	0.55135	40.352	40.09	40.641	0.099407	-0.084402	5.6641E-05	NaN	13.508	23	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180800	+		22370	22082	12501	12502							0.028725896460514377
LERTPKLS	8	Unmodified	_LERTPKLS_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.75274658203125	2	472.282192	942.549831	-0.032905	-1.554E-05	-0.52836	-0.00024953	-0.56126	-0.00026508	472.28189161160054	26.302	0.4252	26.302	26.133	26.558	0					19	14	2	0	0	0	0.33293	1	4359	4359		20.454	0	1	112560			22371	1286	12502	12503	28563	28563					0.0762576030585933
LESDEDNPIF	10	Unmodified	_LESDEDNPIF_					0	0	0		ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	ENSG00000197724|ENST00000359246|PHF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.289794921875	2	589.764226	1177.5139	0.37715	0.00022243	1.7904	0.0010559	2.1675	0.0012783	589.7646470480025	80.12	0.31519	80.094	79.949	80.265	-0.026825					16	10	2	0	0	0	0.29038	1	20766	20766		24.021	2.2739	1	133970			22372	7992	12503	12504	28564	28564					-0.06775786452340071
LESGGALSL	9	Unmodified	_LESGGALSL_					0	0	0			REV__ENSG00000198788|ENST00000675028|MUC2	REV__ENSG00000198788|ENST00000675028|MUC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.7317199707031	2	423.732	845.449448	-0.070409	-2.9834E-05	0.2159	9.1485E-05	0.14549	6.165E-05	423.73198945640974	67.406	0.541	67.406	67.106	67.647	0					33	18	2	0	0	0	0.18803	1	16976	16976		25.399	0	1	340900	+		22373	18861	12504	12505	28565	28565					0.020541032522032765
LESKILTHVA	10	Unmodified	_LESKILTHVA_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8307495117188	2	555.829506	1109.64446	0.0060502	3.3629E-06	-0.88215	-0.00049032	-0.8761	-0.00048696	555.8292582569543	12.852	0.51938	12.753	12.578	13.097	-0.099291					60	17	4	0	0	0	0.40106	1	294	294		3.2813	0	1	497910			22374	1551	12505	12506	28566	28566					0.09402274057174509
LESLFKWF	8	Unmodified	_LESLFKWF_					0	0	0		nc|ENSG00000216937|Q96M83-4|CCDC7;nc|ENSG00000216937|Q96M83-3|CCDC7;nc|ENSG00000216937|Q96M83-5|CCDC7;CCDC7|p.R194Ifs*11|1|0.11|ENSG00000216937|chr10:32726823-32726824|-/TCTCTATATTT|frameshift_variant;ENSG00000216937|ENST00000639629|CCDC7;nc|ENSG00000216937|Q96M83-2|CCDC7	nc|ENSG00000216937|Q96M83-4|CCDC7	nc|ENSG00000216937|Q96M83-4|CCDC7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7717895507812	2	535.289485	1068.56442	0.35559	0.00019034	3.493	0.0018698	3.8486	0.0020601	535.2915196105447	43.108	0.4616	43.192	42.948	43.41	0.083996					23	16	2	0	0	0	0.34092	1	9453	9453		2.0598	0	1	228220			22375	97	12506	12507	28567	28567					0.032878324539979076
LESNERLTK	9	Unmodified	_LESNERLTK_					0	0	0			REV__ENSG00000167014|ENST00000340827|TERB2	REV__ENSG00000167014|ENST00000340827|TERB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2801513671875	2	545.29857	1088.58259	0.31301	0.00017068	-0.24012	-0.00013094	0.07289	3.9747E-05	545.298349398123	25.71	0.4551	25.71	25.445	25.9	0					23	15	2	0	0	0	0.26168	1	4065	4065		1.8442	0	1	196320	+		22376	17358	12507	12508	28568	28568					0.04183922638026161
LESRDELTHRR	11	Unmodified	_LESRDELTHRR_					0	0	0			REV__ENSG00000100425|ENST00000404760|BRD1	REV__ENSG00000100425|ENST00000404760|BRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.27789306640625	3	471.251534	1410.73277	0.11486	5.4126E-05	-0.51937	-0.00024475	-0.40451	-0.00019063	471.25106831008594	20.317	0.59237	20.317	20.18	20.772	0					57	20	4	0	0	0	0.45422	1	2461	2461		4.1166	2.5243	1	173840	+		22377	14195	12508	12509	28569	28569					0.043836626296979375
LESRKKRQYVF	11	Unmodified	_LESRKKRQYVF_					0	0	0			REV__ENST00000373790.8_1_X:70608617-70608695:+|nuORF	REV__ENST00000373790.8_1_X:70608617-70608695:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002624511719	3	485.280654	1452.82013	0.5379	0.00026103	3.0509	0.0014805	3.5888	0.0017416	485.28227834788913	54.777	0.29729	54.841	54.566	54.863	0.063206					15	10	2	0	0	0	0.33287	1	13032	13032		1.3296	0.11481	1	435710	+		22378	20450	12509	12510	28570	28570					0.11183488571282396
LESRKYENK	9	Unmodified	_LESRKYENK_					0	0	0		ENSG00000088305|ENST00000328111|DNMT3B	ENSG00000088305|ENST00000328111|DNMT3B	ENSG00000088305|ENST00000328111|DNMT3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.8118896484375	2	583.811845	1165.60914	0.08873	5.1801E-05	0.33556	0.0001959	0.42429	0.0002477	583.811847219729	22.764	0.63927	22.764	22.505	23.145	0					51	21	3	0	0	0	0.25112	1	3256	3256		16.149	2.2431	1	275090			22379	1320	12510	12511	28571	28571					0.032956115293927724
LESRKYENK	9	Unmodified	_LESRKYENK_					0	0	0		ENSG00000088305|ENST00000328111|DNMT3B	ENSG00000088305|ENST00000328111|DNMT3B	ENSG00000088305|ENST00000328111|DNMT3B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	583.811845	1165.60914	0.045155	2.6362E-05	0.44651	0.00026068	0.49167	0.00028704	583.8118866602013	22.884	0.54	22.797	22.568	23.108	-0.08761	0.0044147	0.00011207	NaN	16.149	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258670			22380	1320	12510	12511							0.032956115293927724
LESRKYENK	9	Unmodified	_LESRKYENK_					0	0	0		ENSG00000088305|ENST00000328111|DNMT3B	ENSG00000088305|ENST00000328111|DNMT3B	ENSG00000088305|ENST00000328111|DNMT3B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	583.811845	1165.60914	0.20944	0.00012228	0.25747	0.00015031	0.46692	0.00027259	583.8117670406152	22.861	0.55396	22.816	22.583	23.137	-0.044867	0.023487	-0.00010866	NaN	16.149	49	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231840			22381	1320	12510	12511							0.032956115293927724
LESRLKSV	8	Unmodified	_LESRLKSV_					0	0	0		ENSG00000179044|ENST00000314586|EXOC3L1	ENSG00000179044|ENST00000314586|EXOC3L1	ENSG00000179044|ENST00000314586|EXOC3L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.77398681640625	2	466.282192	930.549831	-0.33216	-0.00015488	-0.18267	-8.5176E-05	-0.51483	-0.00024006	466.2820060430188	13.298	0.1954	13.298	13.2	13.396	0					13	6	3	0	0	0	0.34419	1	373	373		1.8442	0	1	59440			22382	7099	12511	12512	28572	28572					0.08177760305852644
LESRLPWQKRR	11	Unmodified	_LESRLPWQKRR_					0	0	0		ENST00000431691.1_1_1:224918256-224918361:-|nuORF	ENST00000431691.1_1_1:224918256-224918361:-|nuORF	ENST00000431691.1_1_1:224918256-224918361:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.28717041015625	3	490.288031	1467.84226	-0.33964	-0.00016652	-0.96021	-0.00047078	-1.2999	-0.0006373	490.28758264188684	35.254	0.79729	35.254	34.868	35.665	0					71	28	4	0	0	0	0.41517	1	7032	7032		9.2438	0.95734	1	773490			22383	10476	12512	12513	28573	28573					0.12705713039667899
LESRVEMEK	9	Unmodified	_LESRVEMEK_					0	0	0		MIS18A|p.I201M|1|0.21|ENSG00000159055|chr21:32269725-32269725|T/C|missense_variant	MIS18A|p.I201M|1|0.21|ENSG00000159055|chr21:32269725-32269725|T/C|missense_variant	MIS18A|p.I201M|1|0.21|ENSG00000159055|chr21:32269725-32269725|T/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.7989501953125	2	560.786981	1119.55941	0.54641	0.00030642	1.9827	0.0011119	2.5291	0.0014183	560.7889681718808	47.703	0.13773	47.703	47.634	47.771	0					5	4	2	0	0	0	0.24688	1	10846	10846		10.074	0	1	96913			22384	12542	12513	12514	28574	28574					0.004411605290897569
LESVQLEGQ	9	Unmodified	_LESVQLEGQ_					0	0	0			REV__nc|ENSG00000146147|Q5VWP3-4|MLIP	REV__nc|ENSG00000146147|Q5VWP3-4|MLIP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.77734375	2	501.758746	1001.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.013	1	27.002	26.502	27.502	-0.01156								0	0	0	0.17427	1	4525	4525		29.082	0	1		+		22385	16330	12514	12515	28575	28575					0.0022485596406340846
LETEYVLN	8	Unmodified	_LETEYVLN_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7507629394531	2	490.75039	979.486227	0.20265	9.945E-05	0.91462	0.00044885	1.1173	0.0005483	490.7509223825525	76.282	0.70454	76.282	76.021	76.725	0					42	24	2	0	0	0	0.37937	1	19672	19672		21.747	0.87544	1	551410	+		22386	17772	12515	12516	28576	28576					-0.0043364492189539305
LETLKLYDFF	10	Unmodified	_LETLKLYDFF_					0	0	0		CX3CR1|p.E279Rfs*10|1|0.13|ENSG00000168329|chr3:39265676-39265676|A/-|frameshift_variant;ENSG00000168329|ENST00000399220|CX3CR1;nc|ENSG00000168329|P49238-3|CX3CR1;nc|ENSG00000168329|P49238-4|CX3CR1;nc|ENSG00000168329|P49238-2|CX3CR1	CX3CR1|p.E279Rfs*10|1|0.13|ENSG00000168329|chr3:39265676-39265676|A/-|frameshift_variant	CX3CR1|p.E279Rfs*10|1|0.13|ENSG00000168329|chr3:39265676-39265676|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	644.3449096679688	2	644.844822	1287.67509	0.54683	0.00035262	0.80875	0.00052152	1.3556	0.00087413	645.8485502027634	91.06	0.41544	91.061	90.859	91.275	0.00047302					58	29	3	0	0	0	0.32123	1	24220	24220		1.6526	0.17072	1	946940			22387	252	12516	12517	28577	28577					0.04276007651560576
LETLQQRVKRQ	11	Unmodified	_LETLQQRVKRQ_					0	0	0		ENST00000435830.6_1_3:37336478-37354923:+|nuORF;nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	ENST00000435830.6_1_3:37336478-37354923:+|nuORF	ENST00000435830.6_1_3:37336478-37354923:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7558288574219	3	466.944042	1397.8103	0.043515	2.0319E-05	-0.44113	-0.00020598	-0.39762	-0.00018566	466.9438626482438	22.724	0.4533	22.68	22.471	22.925	-0.044867					24	15	2	0	0	0	0.33334	1	3240	3240		1.2148	0.20126	1	47111			22388	4603	12517	12518	28578	28578					0.12730300565885955
LETLTVYML	9	Unmodified	_LETLTVYML_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.295654296875	2	541.793743	1081.57293	0.1903	0.0001031	2.4992	0.0013541	2.6895	0.0014572	542.2953996255407	13.635	0.73192	13.567	13.215	13.947	-0.067496					65	25	5	0	0	0	0.34536	1	464	464		2.0598	0.21551	1	318250	+		22389	18733	12518	12519	28579	28579					0.035410183083058655
LETPPSCCTF	10	Unmodified	_LETPPSCCTF_					0	0	0		ENST00000318673.6_1_2:220033361-220034039:-|nuORF	ENST00000318673.6_1_2:220033361-220034039:-|nuORF	ENST00000318673.6_1_2:220033361-220034039:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3057250976562	2	549.235735	1096.45692	0.59286	0.00032562	-3.125	-0.0017163	-2.5321	-0.0013907	549.2336609196002	65.677	0.38966	65.677	65.431	65.821	0					19	13	2	0	0	0	0.29038	1	16368	16368		24.021	10.115	1	94387			22390	9368	12519	12520	28580	28580					-0.08745248534069106
LETQVGNLVE	10	Unmodified	_LETQVGNLVE_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-5|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-5|PARD3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.2837524414062	2	551.292953	1100.57135	0.2318	0.00012779	1.1047	0.00060902	1.3365	0.00073681	551.293463317496	33.356	0.71822	33.423	33.081	33.799	0.066704					40	25	2	0	0	0	0.3001	1	6554	6554		20.415	1.1575	1	599210	+		22391	14909	12520	12521	28581	28581					0.025091005438980574
LETTFDSTV	9	Unmodified	_LETTFDSTV_					0	0	0		nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7542724609375	2	506.745305	1011.47606	0.2988	0.00015142	-1.4741	-0.00074698	-1.1753	-0.00059556	506.7445564408004	70.827	0.35424	70.888	70.69	71.044	0.060783					16	12	2	0	0	0	0.22188	1	17996	17996		20.454	2.3186	1	147210			22392	869	12521	12522	28582	28582					-0.029222526471357924
LEVHYDNP	8	Unmodified	_LEVHYDNP_					0	0	0		nc|ENSG00000079931|Q6UVY6-2|MOXD1;ENSG00000079931|ENST00000367963|MOXD1	nc|ENSG00000079931|Q6UVY6-2|MOXD1	nc|ENSG00000079931|Q6UVY6-2|MOXD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.3237609863281	2	493.732532	985.45051	0.39405	0.00019456	-0.10919	-5.3908E-05	0.28487	0.00014065	493.73237831222747	40.538	0.43098	40.637	40.453	40.884	0.099407					20	15	2	0	0	0	0.34319	1	8634	8634		0.69038	0	1	173060			22393	1144	12522	12523	28583	28583					-0.042796823789103655
LEVIAPLLSQ	10	Unmodified	_LEVIAPLLSQ_					0	0	0			REV__ENSG00000105568|ENST00000322088|PPP2R1A	REV__ENSG00000105568|ENST00000322088|PPP2R1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.8248291015625	2	541.826432	1081.63831	0.12183	6.6011E-05	-1.4142	-0.00076623	-1.2923	-0.00070021	541.8248209595987	28.21	0.5184	28.21	27.954	28.472	0					35	17	3	0	0	0	0.37454	1	4892	4892		8.1555	0	1	166860	+		22394	14465	12523	12524	28584	28584					0.10075755825687338
LEVLEELIV	9	Unmodified	_LEVLEELIV_					0	0	0		nc|ENSG00000126246|Q9H665-2|IGFLR1;ENSG00000126246|ENST00000246532|IGFLR1	nc|ENSG00000126246|Q9H665-2|IGFLR1	nc|ENSG00000126246|Q9H665-2|IGFLR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.82470703125	2	528.81299	1055.61143	0.53453	0.00028267	1.2619	0.00066732	1.7965	0.00094999	528.8135299121558	57.63	0.55603	57.63	57.323	57.88	0					32	19	2	0	0	0	0.22596	1	13870	13870		21.747	6.9084	1	457470			22395	3264	12524	12525	28585	28585					0.08584647214479446
LEVLEELIV	9	Unmodified	_LEVLEELIV_					0	0	0		nc|ENSG00000126246|Q9H665-2|IGFLR1;ENSG00000126246|ENST00000246532|IGFLR1	nc|ENSG00000126246|Q9H665-2|IGFLR1	nc|ENSG00000126246|Q9H665-2|IGFLR1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.81299	1055.61143	0.36281	0.00019186	1.5453	0.00081718	1.9081	0.001009	528.8137137226302	57.653	0.59175	57.636	57.31	57.901	-0.0172	0.0028732	0.00012664	NaN	21.747	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517310			22396	3264	12524	12525							0.08584647214479446
LEVLFFVFIL	10	Unmodified	_LEVLFFVFIL_					0	0	0			REV__ENST00000381297.9_1_X:1584011-1584302:-|nuORF	REV__ENST00000381297.9_1_X:1584011-1584302:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3716430664062	2	620.373018	1238.73148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.836	1	96.836	96.336	97.336	0								0	0	0	0.38126	1	25884	25884		1.6526	0.45928	1		+		22397	20562	12525	12526	28586	28586					0.1216668027891501
LEVLHLSLVV	10	Unmodified	_LEVLHLSLVV_					0	0	0		nc|ENSG00000184988|Q96A25-2|TMEM106A;ENSG00000184988|ENST00000612339|TMEM106A	nc|ENSG00000184988|Q96A25-2|TMEM106A	nc|ENSG00000184988|Q96A25-2|TMEM106A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.285400390625	2	561.350074	1120.6856	0.85451	0.00047968	-0.84468	-0.00047416	0.0098327	5.5196E-06	561.3494677013423	50.606	0.64088	50.626	50.361	51.002	0.020691					55	23	3	0	0	0	0.31629	1	11814	11814		6.2058	0	1	419170			22398	7491	12526	12527	28587	28587					0.13008035096663662
LEVLRKSSF	9	Unmodified	_LEVLRKSSF_					0	0	0		ENST00000395080.7_1_4:88898090-88901237:+|nuORF	ENST00000395080.7_1_4:88898090-88901237:+|nuORF	ENST00000395080.7_1_4:88898090-88901237:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3305053710938	2	539.816399	1077.61824	0.94855	0.00051204	0.45135	0.00024365	1.3999	0.00075569	540.3172236522764	77.474	0.1379	77.443	77.404	77.542	-0.031334					6	4	2	0	0	0	0.25989	1	20005	20005		14.838	4.0143	1	43257			22399	10082	12527	12528	28588	28588					0.0825400488570267
LEVPGLARLL	10	Unmodified	_LEVPGLARLL_					0	0	0			REV__ENSG00000163959|ENST00000296327|SLC51A	REV__ENSG00000163959|ENST00000296327|SLC51A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8425903320312	2	540.842416	1079.67028	0.57557	0.00031129	-0.26294	-0.00014221	0.31263	0.00016908	540.8422115610206	72.655	1.31	72.655	72.241	73.551	0					101	47	4	0	0	0	0.12791	1	18520	18520		41.956	1.7163	1	1314700	+		22400	17110	12528	12529	28589	28589					0.13363168299497374
LEVPGLARLL	10	Unmodified	_LEVPGLARLL_					0	0	0			REV__ENSG00000163959|ENST00000296327|SLC51A	REV__ENSG00000163959|ENST00000296327|SLC51A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7718505859375	2	540.842416	1079.67028	0.57557	0.00031129	-0.26294	-0.00014221	0.31263	0.00016908	540.8422115610206	72.655	1.31	72.655	72.241	73.551	0					101	47	4	0	0	0	0.20294	1	18551	18551		49.554	9.6046	1	1314700	+		22401	17110	12528	12529	28590	28590					0.13363168299497374
LEVRQLQK	8	Unmodified	_LEVRQLQK_					0	0	0			REV__nc|ENSG00000114853|Q9UFB7-2|ZBTB47	REV__nc|ENSG00000114853|Q9UFB7-2|ZBTB47	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.30963134765625	2	507.308741	1012.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.586	1	95.586	95.086	96.086	0								0	0	0	0.37078	1	25517	25517		5.2307	0	1		+		22402	14850	12529	12530	28591	28591					0.09713138088534379
LEVRSLVG	8	Unmodified	_LEVRSLVG_					0	0	0			REV__ENSG00000170832|ENST00000300896|USP32	REV__ENSG00000170832|ENST00000300896|USP32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2409973144531	2	436.763635	871.512717	-0.35176	-0.00015364	0.020876	9.1178E-06	-0.33089	-0.00014452	436.7636283930036	13.516	0.45803	13.516	13.309	13.767	0					19	15	2	0	0	0	0.34437	1	515	515		0.69038	0	1	49891	+		22403	17598	12530	12531	28592	28592					0.07182088760112038
LEVSEQREML	10	Unmodified	_LEVSEQREML_					0	0	0			REV__ENSG00000102302|ENST00000375135|FGD1	REV__ENSG00000102302|ENST00000375135|FGD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.5681457519531	3	411.876306	1232.60709	0.16582	6.8297E-05	0.61577	0.00025362	0.78159	0.00032192	411.87655408713056	47.245	0.53025	47.297	47.014	47.544	0.052574					49	19	3	0	0	0	0.32068	1	10770	10770		1.7423	1.7423	1	383790	+		22404	14317	12531	12532	28593	28593					8.814729267214716E-05
LEVTLRDGTF	10	Unmodified	_LEVTLRDGTF_					0	0	0		ENST00000590730.5_1_16:4750718-4779992:-|nuORF	ENST00000590730.5_1_16:4750718-4779992:-|nuORF	ENST00000590730.5_1_16:4750718-4779992:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.79248046875	2	575.808771	1149.60299	0.34433	0.00019827	2.255	0.0012985	2.5993	0.0014967	575.8099213961901	73.162	0.54823	73.133	72.927	73.476	-0.029305					31	19	3	0	0	0	0.33817	1	18721	18721		14.838	0.93222	1	88882			22405	12175	12532	12533	28594	28594					0.034170932978668134
LEVVACQK	8	Unmodified	_LEVVACQK_					0	0	0			REV__ENSG00000130477|ENST00000519716|UNC13A	REV__ENSG00000130477|ENST00000519716|UNC13A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.9150085449219	2	445.244221	888.473888	0.35588	0.00015845	-0.24424	-0.00010875	0.11164	4.9705E-05	445.24405086235015	21.433	1.0052	21.333	20.738	21.744	-0.10034					51	35	2	0	0	0	0.3366	1	2830	2830		18.135	5.6034	1	479210	+		22406	15458	12533	12534	28595	28595					0.025190401340637436
LEVYHEQAF	9	Unmodified	_LEVYHEQAF_					0	0	0			REV__ENSG00000254656|ENST00000649591|RTL1	REV__ENSG00000254656|ENST00000649591|RTL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2615356445312	2	568.274564	1134.53457	0.32731	0.000186	-0.92865	-0.00052773	-0.60134	-0.00034173	568.2739718334861	46.282	0.50664	46.342	46.18	46.686	0.059837					38	18	3	0	0	0	0.18803	1	10418	10418		25.399	1.3787	1	903350	+		22407	19237	12534	12535	28596	28596					-0.0273115128200061
LEVYHEQAF	9	Unmodified	_LEVYHEQAF_					0	0	0			REV__ENSG00000254656|ENST00000649591|RTL1	REV__ENSG00000254656|ENST00000649591|RTL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	568.274564	1134.53457	0.095254	5.4131E-05	-0.56793	-0.00032274	-0.47268	-0.00026861	568.274228396487	46.299	0.49212	46.364	46.227	46.719	0.065048	-0.058545	0.00016815	NaN	25.399	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	891630	+		22408	19237	12534	12535							-0.0273115128200061
LEWPLATL	8	Unmodified	_LEWPLATL_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2945861816406	2	471.768386	941.522219	0.19109	9.0152E-05	-0.88571	-0.00041785	-0.69461	-0.0003277	471.76810049398824	49.002	0.71476	49.002	48.827	49.542	0					33	25	2	0	0	0	0.27344	1	11277	11277		42.095	17.421	1	732000			22409	7783	12535	12536	28597	28597					0.049118570456244015
LEWQYYQNK	9	Unmodified	_LEWQYYQNK_					0	0	0		ENST00000486117.1_1_2:100048385-100055261:-|nuORF;ENST00000413697.5_1_2:100019089-100065949:-|nuORF;nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1	ENST00000486117.1_1_2:100048385-100055261:-|nuORF	ENST00000486117.1_1_2:100048385-100055261:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.8634338378906	3	424.540022	1270.59824	-0.070268	-2.9832E-05	2.4808	0.0010532	2.4106	0.0010234	424.541241043538	31.386	0.54654	31.427	30.988	31.535	0.040991					23	19	2	0	0	0	0.25066	1	5797	5797		0.18151	0	1	170450			22410	3924	12536	12537	28598	28598					-0.02623790844904761
LEYEMWEEL	9	Unmodified	_LEYEMWEEL_					0	0	0			REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.2093811035156	3	414.518007	1240.53219	-0.10262	-4.2537E-05	2.2626	0.00093789	2.16	0.00089535	414.51907148336966	27.102	0.56669	27.102	26.841	27.408	0					33	19	3	0	0	0	0.25879	1	4587	4587		2.7352	0	1	51212	+		22411	16352	12537	12538	28599	28599					-0.07845367801951397
LEYEMWEEL	9	Unmodified	_LEYEMWEEL_					0	0	0			REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2095031738281	3	414.518007	1240.53219	0.17996	7.4598E-05	2.5104	0.0010406	2.6904	0.0011152	414.51896945548486	27.128	0.45371	27.106	26.867	27.321	-0.021412					23	15	2	0	0	0	0.25879	1	4545	4545		2.7352	0	1	51698	+		22412	16352	12537	12538	28600	28600					-0.07845367801951397
LEYEVKYY	8	Unmodified	_LEYEVKYY_					0	0	0		nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4	nc|ENSG00000116106|P54764-2|EPHA4	nc|ENSG00000116106|P54764-2|EPHA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.2247924804688	2	553.773865	1105.53318	0.57943	0.00032088	0.38255	0.00021185	0.96199	0.00053272	553.7739838831274	84.387	0.88264	84.464	83.998	84.881	0.077095					83	34	4	0	0	0	0.34272	1	22075	22075		7.9102	3.1541	1	441030			22413	2702	12538	12539	28601	28601					-0.015367853707630275
LEYNVRLF	8	Unmodified	_LEYNVRLF_					0	0	0			REV__nc|ENSG00000078295|Q08462-2|ADCY2	REV__nc|ENSG00000078295|Q08462-2|ADCY2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2720336914062	2	527.290017	1052.56548	0.47679	0.00025141	0.27013	0.00014244	0.74692	0.00039384	527.2902850027666	52.109	1.1227	52.109	51.809	52.932	0					60	40	2	0	0	0	0.43043	1	12375	12375		12.532	1.7076	1	1148200	+		22414	13856	12539	12540	28602	28602					0.04130046822888289
LEYQRIEKTLK	11	Unmodified	_LEYQRIEKTLK_					0	0	0		nc|ENSG00000163617|Q8NCU4-2|CCDC191;ENST00000460813.5_1_3:113723412-113755878:-|nuORF;ENSG00000163617|ENST00000295878|CCDC191	nc|ENSG00000163617|Q8NCU4-2|CCDC191	nc|ENSG00000163617|Q8NCU4-2|CCDC191	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.9176025390625	3	474.276798	1419.80856	0.35573	0.00016871	-1.8287	-0.0008673	-1.4729	-0.00069859	474.2759504238842	36.009	0.24368	36.091	35.874	36.117	0.082355					14	8	2	0	0	0	0.32951	1	7244	7244		11.065	6.9487	1	107930			22415	5709	12540	12541	28603	28603					0.11545246757282257
LEYRDRFLLA	10	Unmodified	_LEYRDRFLLA_					0	0	0		SETDB2|p.L334Hfs*37|1|0.05|ENSG00000136169|chr13:49480313-49480314|-/ATTTAGAA|frameshift_variant	SETDB2|p.L334Hfs*37|1|0.05|ENSG00000136169|chr13:49480313-49480314|-/ATTTAGAA|frameshift_variant	SETDB2|p.L334Hfs*37|1|0.05|ENSG00000136169|chr13:49480313-49480314|-/ATTTAGAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.8606567382812	2	648.358962	1294.70337	0.053619	3.4764E-05	0.027191	1.7629E-05	0.080809	5.2393E-05	648.8613050794434	103.85	0.035011	103.85	103.84	103.87	0					6	4	2	0	0	0	0.32033	1	27581	27581		3.5965	0.60125	1	428540			22416	23376	12541	12542	28604	28604					0.06780750351526876
LFACPTFILF	10	Unmodified	_LFACPTFILF_					0	0	0			REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF	REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3150024414062	2	586.314646	1170.61474	0.37903	0.00022223	-0.2023	-0.00011861	0.17673	0.00010362	586.3142773649563	90.677	0.59073	90.677	90.238	90.829	0					67	45	2	0	0	0	0.39536	1	23957	23957		4.3292	0	1	147270	+		22417	16037	12542	12543	28605	28605					0.03625618787464191
LFACPTFILF	10	Unmodified	_LFACPTFILF_					0	0	0			REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF	REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8136596679688	2	586.314646	1170.61474	0.17041	9.9911E-05	-0.27368	-0.00016046	-0.10327	-6.055E-05	586.314263746583	94.628	1.2985	94.628	93.954	95.253	0					171	112	2	0	0	0	0.31745	1	25315	25315		7.9102	4.9149	1	126540	+		22418	16037	12542	12543	28606	28606					0.03625618787464191
LFACPTFILF	10	Unmodified	_LFACPTFILF_					0	0	0			REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF	REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3146362304688	2	586.314646	1170.61474	0.47576	0.00027895	-0.13621	-7.986E-05	0.33955	0.00019909	586.3144687378705	90.547	1.5116	90.547	89.403	90.915	0.0003891					166	119	2	0	0	0	0.37587	1	24006	24006		7.9102	1.187	1	220130	+		22419	16037	12542	12543	28607	28607					0.03625618787464191
LFACPTFILF	10	Unmodified	_LFACPTFILF_					0	0	0			REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF	REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.314697265625	2	586.314646	1170.61474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.043	1	92.043	91.543	92.543	0.00046539								0	0	0	0.3664	1	24458	24458		7.9102	0	1		+		22420	16037	12542	12543	28608	28608					0.03625618787464191
LFADLHAYLD	10	Unmodified	_LFADLHAYLD_					0	0	0		ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1	ENST00000481895.5_1_1:33256818-33282875:-|nuORF	ENST00000481895.5_1_1:33256818-33282875:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.7647705078125	2	589.298039	1176.58152	0.83492	0.00049202	0.37205	0.00021925	1.207	0.00071126	589.2980946391765	77.611	0.60732	77.579	77.375	77.982	-0.031334					27	21	2	0	0	0	0.28434	1	20018	20018		25.399	0	1	125730			22421	3800	12543	12544	28609	28609					0.00029708269130424014
LFAETFKRHLI	11	Unmodified	_LFAETFKRHLI_					0	0	0		ENST00000526600.1_1_11:12965683-12965947:+|nuORF	ENST00000526600.1_1_11:12965683-12965947:+|nuORF	ENST00000526600.1_1_11:12965683-12965947:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.9347229003906	3	458.934595	1373.78196	0.2663	0.00012221	0.16329	7.494E-05	0.42959	0.00019715	458.9344928935368	45.062	1.6164	45.062	44.605	46.222	0					192	58	4	0	0	0	0.26959	4	10044	9996;10044;10185;10237		24.957	5.8131	1	1386500			22422	11558	12544	12545	28610;28611;28612;28613	28611					0.11001602656597242
LFAETFKRHLI	11	Unmodified	_LFAETFKRHLI_					0	0	0		ENST00000526600.1_1_11:12965683-12965947:+|nuORF	ENST00000526600.1_1_11:12965683-12965947:+|nuORF	ENST00000526600.1_1_11:12965683-12965947:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.9343566894531	3	458.934595	1373.78196	0.24297	0.00011151	0.20843	9.5657E-05	0.4514	0.00020716	458.9344787476406	44.797	2.4349	44.865	43.645	46.08	0.068569					193	88	3	0	0	0	0.32493	2	9912	9912;10128		19.987	2.415	1	1087700			22423	11558	12544	12545	28614;28615	28614					0.11001602656597242
LFAETFKRHLI	11	Unmodified	_LFAETFKRHLI_					0	0	0		ENST00000526600.1_1_11:12965683-12965947:+|nuORF	ENST00000526600.1_1_11:12965683-12965947:+|nuORF	ENST00000526600.1_1_11:12965683-12965947:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2693786621094	3	458.934595	1373.78196	0.30651	0.00014067	0.15357	7.048E-05	0.46008	0.00021115	458.93443708500456	44.786	2.4571	44.862	43.727	46.184	0.075047					194	90	4	0	0	0	0.33432	2	9962	9910;9962		19.144	2.8694	1	952280			22424	11558	12544	12545	28616;28617	28617					0.11001602656597242
LFAFAITA	8	Unmodified	_LFAFAITA_					0	0	0			REV__ENSG00000157837|ENST00000353487|SPPL3	REV__ENSG00000157837|ENST00000353487|SPPL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.2447509765625	2	427.244547	852.47454	0.10694	4.569E-05	-0.016533	-7.0634E-06	0.090408	3.8627E-05	427.2443533027077	91.096	0.59318	91.096	90.859	91.452	0.00047302					64	39	2	0	0	0	0.45851	1	24160	24160		2.8892	0	1	920600	+		22425	16797	12545	12546	28618	28618					0.042402028454034735
LFAFAVTLLF	10	Unmodified	_LFAFAVTLLF_					0	0	0			REV__nc|ENSG00000167895|Q8IU68-2|TMC8	REV__nc|ENSG00000167895|Q8IU68-2|TMC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.805419921875	2	571.336436	1140.65832	0.19108	0.00010917	-0.028658	-1.6373E-05	0.16242	9.2795E-05	571.3362437864457	76.622	0.63472	76.676	76.398	77.033	0.053413					55	22	3	0	0	0	0.27042	1	19839	19839		15.847	0	1	393020	+		22426	17419	12546	12547	28619	28619					0.09361551556276027
LFAFAVTLLF	10	Unmodified	_LFAFAVTLLF_					0	0	0			REV__nc|ENSG00000167895|Q8IU68-2|TMC8	REV__nc|ENSG00000167895|Q8IU68-2|TMC8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	571.336436	1140.65832	0.24406	0.00013944	-0.034643	-1.9793E-05	0.20942	0.00011965	571.3361651430561	76.701	0.58771	76.701	76.396	76.983	0	0.0068855	0.00014498	NaN	15.847	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440660	+		22427	17419	12546	12547							0.09361551556276027
LFAFAVTLLF	10	Unmodified	_LFAFAVTLLF_					0	0	0			REV__nc|ENSG00000167895|Q8IU68-2|TMC8	REV__nc|ENSG00000167895|Q8IU68-2|TMC8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	571.336436	1140.65832	0.43419	0.00024807	-0.39558	-0.00022601	0.038603	2.2055E-05	571.33609144957	76.737	0.59633	76.706	76.422	77.019	-0.031487	0.01164	-0.00026745	NaN	15.847	55	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	568050	+		22428	17419	12546	12547							0.09361551556276027
LFAGFENFLL	10	Unmodified	_LFAGFENFLL_					0	0	0		ENSG00000188269|ENST00000322301|OR7A5	ENSG00000188269|ENST00000322301|OR7A5	ENSG00000188269|ENST00000322301|OR7A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134765625	2	585.813325	1169.6121	0.44097	0.00025833	-0.0777	-4.5517E-05	0.36327	0.00021281	585.8133499474704	88.733	2.0821	88.733	87.765	89.847	0					162	112	2	0	0	0	0.25219	1	23685	23685		26.268	1.2772	1	278400			22429	7740	12547	12548	28620	28620					0.03407486654191416
LFAGFENFLL	10	Unmodified	_LFAGFENFLL_					0	0	0		ENSG00000188269|ENST00000322301|OR7A5	ENSG00000188269|ENST00000322301|OR7A5	ENSG00000188269|ENST00000322301|OR7A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8136596679688	2	585.813325	1169.6121	0.29647	0.00017368	-0.38512	-0.00022561	-0.088651	-5.1933E-05	585.8133915458719	100.97	0.39828	100.97	100.69	101.09	-0.0054703					91	57	2	0	0	0	0.2811	1	26977	26977		22.736	0	1	260380			22430	7740	12547	12548	28621	28621					0.03407486654191416
LFAGFENFLL	10	Unmodified	_LFAGFENFLL_					0	0	0		ENSG00000188269|ENST00000322301|OR7A5	ENSG00000188269|ENST00000322301|OR7A5	ENSG00000188269|ENST00000322301|OR7A5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8133544921875	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.509	1	98.502	98.002	99.002	-0.0068283								0	0	0	0.3367	1	26395	26395		20.415	1.0526	1				22431	7740	12547	12548	28622	28622					0.03407486654191416
LFALQLKRDL	10	Unmodified	_LFALQLKRDL_					0	0	0		FARP2|p.F319Ifs*37|1|0.05|ENSG00000006607|chr2:241434243-241434244|-/GATAGGGAATT|frameshift_variant;nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2	FARP2|p.F319Ifs*37|1|0.05|ENSG00000006607|chr2:241434243-241434244|-/GATAGGGAATT|frameshift_variant	FARP2|p.F319Ifs*37|1|0.05|ENSG00000006607|chr2:241434243-241434244|-/GATAGGGAATT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.906982421875	3	406.251924	1215.73394	0.077465	3.147E-05	0.12745	5.1776E-05	0.20491	8.3247E-05	406.251935858261	36.148	0.4879	36.23	35.874	36.362	0.082355					25	17	2	0	0	0	0.31969	1	7271	7271		1.5923	0	1	366190			22432	363	12548	12549	28623	28623					0.13470528736570486
LFAQGSPF	8	Unmodified	_LFAQGSPF_					0	0	0			REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.2434997558594	2	433.723978	865.433404	0.32348	0.0001403	-0.32819	-0.00014234	-0.0047089	-2.0423E-06	433.7237911198513	58.489	0.29958	58.475	58.331	58.631	-0.014267					13	10	2	0	0	0	0.28969	1	14155	14155		36.044	36.044	1	117820	+		22433	22888	12549	12550	28624	28624					-0.004695581940381999
LFASECKANLF	11	Unmodified	_LFASECKANLF_					0	0	0			REV__ENSG00000114391|ENST00000394077|RPL24	REV__ENSG00000114391|ENST00000394077|RPL24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.7351684570312	2	621.812999	1241.61144	0.18974	0.00011798	-3.9142	-0.0024339	-3.7245	-0.0023159	621.811008760503	66.255	0.35223	66.338	66.192	66.544	0.083824					16	12	2	0	0	0	0.32855	1	16562	16562		10.8	1.4164	1	98022	+		22434	14832	12550	12551	28625	28625					0.00030323942814902693
LFASQVMRY	9	Unmodified	_LFASQVMRY_					0	0	0		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.35595703125	2	557.789327	1113.5641	0.41017	0.00022879	0.70689	0.0003943	1.1171	0.00062308	557.7892871682078	51.534	0.61159	51.534	51.198	51.809	0					31	22	2	0	0	0	0.20881	1	11979	11979		27.629	8.3718	1	172760			22435	1069	12551	12552	28626	28626					0.011860894625215224
LFAVFQTTF	9	Unmodified	_LFAVFQTTF_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2872314453125	2	537.286943	1072.55933	0.65115	0.00034985	-0.032431	-1.7425E-05	0.61872	0.00033243	537.2868195265587	87.122	2.0264	87.122	86.857	88.883	0					176	95	4	0	0	0	1.3869E-07	3	22972	22972;23062;23119		174.73	103.59	1	2203800			22436	4660	12552	12553	28627;28628;28629	28627					0.0259552859138239
LFAVFQTTF	9	Unmodified	_LFAVFQTTF_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2872924804688	2	537.286943	1072.55933	0.4453	0.00023925	0.07578	4.0715E-05	0.52108	0.00027997	537.2869437936813	87.009	1.5207	87.096	86.824	88.345	0.08709					150	74	3	0	0	0	5.0285E-07	3	22931	22931;22980;23070		160.52	89.382	1	2574300			22437	4660	12552	12553	28630;28631;28632	28630					0.0259552859138239
LFAVFQTTF	9	Unmodified	_LFAVFQTTF_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2871704101562	2	537.286943	1072.55933	0.61623	0.00033109	-0.00012306	-6.6118E-08	0.61611	0.00033103	537.2868642123377	87.19	1.3009	87.184	86.846	88.147	-0.0056229					159	63	4	0	0	0	6.1526E-05	2	23001	23001;23114		147.06	85.702	1	2449200			22438	4660	12552	12553	28633;28634	28633					0.0259552859138239
LFCETIMFTL	10	Unmodified	_LFCETIMFTL_					0	0	0			REV__ENSG00000279961|ENST00000623286|OR8U3	REV__ENSG00000279961|ENST00000623286|OR8U3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.30078125	2	609.300878	1216.5872	0.20468	0.00012471	-0.28982	-0.00017659	-0.085141	-5.1877E-05	609.3006592283215	18.605	0.44478	18.605	18.419	18.864	0					35	15	3	0	0	0	0.40854	1	1993	1993		0.40072	0.050084	1	83600	+		22439	19356	12553	12554	28635	28635					-0.012426525350520023
LFCETIMFTL	10	Unmodified	_LFCETIMFTL_					0	0	0			REV__ENSG00000279961|ENST00000623286|OR8U3	REV__ENSG00000279961|ENST00000623286|OR8U3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	609.300878	1216.5872	0.20468	0.00012471	-0.28982	-0.00017659	-0.085141	-5.1877E-05	609.3006592283215	18.605	0.44478	18.605	18.419	18.864	0	-0.049246	-0.00044662	NaN	0.40072	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83600	+		22440	19356	12553	12554							-0.012426525350520023
LFCETIMFTL	10	Unmodified	_LFCETIMFTL_					0	0	0			REV__ENSG00000279961|ENST00000623286|OR8U3	REV__ENSG00000279961|ENST00000623286|OR8U3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	609.300878	1216.5872	0.20182	0.00012297	0.21352	0.0001301	0.41534	0.00025307	609.3008191192405	18.762	0.53192	18.645	18.414	18.946	-0.11739	-0.0092961	0.00016674	NaN	0.40072	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81781	+		22441	19356	12553	12554							-0.012426525350520023
LFCETIMFTL	10	Unmodified	_LFCETIMFTL_					0	0	0			REV__ENSG00000279961|ENST00000623286|OR8U3	REV__ENSG00000279961|ENST00000623286|OR8U3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	609.300878	1216.5872	-0.044485	-2.7105E-05	0.33724	0.00020548	0.29275	0.00017837	609.3011122035066	18.771	0.50355	18.713	18.483	18.986	-0.058174	0.058542	0.00031751	NaN	0.40072	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82016	+		22442	19356	12553	12554							-0.012426525350520023
LFDIEITMT	9	Oxidation (M)	_LFDIEITM(Oxidation (M))T_		LFDIEITM(1)T		LFDIEITM(55)T	0	0	1			REV__ENSG00000073969|ENST00000398238|NSF	REV__ENSG00000073969|ENST00000398238|NSF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7715454101562	2	549.773008	1097.53146	0.66878	0.00036768	1.8713	0.0010288	2.54	0.0013964	550.2771347945451	83.581	1.3269	83.581	83.2	84.527	0					103	51	3	0	0	0	0.044952	1	21809	21809		54.774	20.372	1	2881400	+		22443	13784	12554	12555	28636	28636		989			-0.013401624510152033
LFDIEITMT	9	Oxidation (M)	_LFDIEITM(Oxidation (M))T_		LFDIEITM(1)T		LFDIEITM(85)T	0	0	1			REV__ENSG00000073969|ENST00000398238|NSF	REV__ENSG00000073969|ENST00000398238|NSF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.771484375	2	549.773008	1097.53146	0.64222	0.00035308	1.8375	0.0010102	2.4798	0.0013633	550.2771540712017	83.604	1.492	83.587	83.16	84.652	-0.016823					120	64	3	0	0	0	0.0061338	1	21815	21815		85.357	14.641	1	2852100	+		22444	13784	12554	12555	28637	28637		989			-0.013401624510152033
LFDLSGVFL	9	Unmodified	_LFDLSGVFL_					0	0	0		ENST00000522362.6_1_8:26364258-26364426:-|nuORF	ENST00000522362.6_1_8:26364258-26364426:-|nuORF	ENST00000522362.6_1_8:26364258-26364426:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.9745788574219	2	505.781493	1009.54843	-0.085	-4.2992E-05	0.39295	0.00019875	0.30795	0.00015576	505.78140217209074	106.13	0.47226	106.13	105.78	106.25	0					126	67	2	0	0	0	0.24311	1	28007	28007		16.942	0	1	192440			22445	11498	12555	12556	28638	28638					0.04404126217104931
LFDLSGVFL	9	Unmodified	_LFDLSGVFL_					0	0	0		ENST00000522362.6_1_8:26364258-26364426:-|nuORF	ENST00000522362.6_1_8:26364258-26364426:-|nuORF	ENST00000522362.6_1_8:26364258-26364426:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	505.781493	1009.54843	0.26004	0.00013152	0.26232	0.00013268	0.52235	0.0002642	505.78143156803327	106.12	0.44569	106.12	105.82	106.26	0.0031738	0.045732	-5.1635E-05	NaN	16.942	100	51	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207460			22446	11498	12555	12556							0.04404126217104931
LFDNTVQHPH	10	Unmodified	_LFDNTVQHPH_					0	0	0			REV__L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|54|1|sense	REV__L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|54|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.29736328125	2	604.296362	1206.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.03	1	100.07	99.573	100.57	0.038994								0	0	0	0.36126	1	26743	26743		10.074	2.1638	1		+		22447	22812	12556	12557	28639	28639					-0.016855417848546494
LFDPSNPLL	9	Unmodified	_LFDPSNPLL_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3;ZFHX3|p.V2783Afs*6|1|0.37|ENSG00000140836|chr16:72794330-72794334|GGGGA/-|frameshift_variant	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2842102050781	2	508.276575	1014.5386	0.3393	0.00017246	0.05803	2.9495E-05	0.39733	0.00020196	508.2764406923072	70.303	1.1151	70.303	69.787	70.902	0					67	40	3	0	0	0	0.24739	1	17670	17670		13.508	3.3245	1	586100			22448	4338	12557	12558	28640	28640					0.03190938211707817
LFDPSNPLL	9	Unmodified	_LFDPSNPLL_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3;ZFHX3|p.V2783Afs*6|1|0.37|ENSG00000140836|chr16:72794330-72794334|GGGGA/-|frameshift_variant	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	508.276575	1014.5386	0.29356	0.00014921	-0.088871	-4.5171E-05	0.20469	0.00010404	508.2764097977201	70.225	1.0827	70.291	69.91	70.993	0.066048	-0.010077	-0.00011609	NaN	13.508	60	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	644570			22449	4338	12557	12558							0.03190938211707817
LFDPSNPLL	9	Unmodified	_LFDPSNPLL_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3;ZFHX3|p.V2783Afs*6|1|0.37|ENSG00000140836|chr16:72794330-72794334|GGGGA/-|frameshift_variant	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.276575	1014.5386	0.32321	0.00016428	0.095715	4.865E-05	0.41892	0.00021293	508.27636984216423	70.335	0.98089	70.31	69.962	70.943	-0.024872	0.0084884	7.1554E-05	NaN	13.508	67	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	636330			22450	4338	12557	12558							0.03190938211707817
LFDPTFSLTGF	11	Unmodified	_LFDPTFSLTGF_					0	0	0			REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	REV__nc|ENSG00000135686|Q8N4N3-2|KLHL36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3472900390625	2	622.813522	1243.61249	0.38709	0.00024108	0.20948	0.00013046	0.59656	0.00037155	622.8136651561272	85.805	0.49468	85.796	85.559	86.054	-0.0090103					28	17	2	0	0	0	0.32951	1	22484	22484		8.7454	2.0222	1	172070	+		22451	15757	12558	12559	28641	28641					0.00042861583347075793
LFDVRDEAL	9	Unmodified	_LFDVRDEAL_					0	0	0			REV__ENST00000529207.5_1_11:64899759-64900720:-|nuORF	REV__ENST00000529207.5_1_11:64899759-64900720:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.80615234375	2	539.282389	1076.55022	0.46655	0.0002516	1.3003	0.00070121	1.7668	0.00095281	539.2826854668933	43.152	0.51752	43.152	42.871	43.388	0					38	18	3	0	0	0	0.24311	1	9512	9512		11.64	0	1	457620	+		22452	21993	12559	12560	28642	28642					0.01501135235048423
LFDVRDEAL	9	Unmodified	_LFDVRDEAL_					0	0	0			REV__ENST00000529207.5_1_11:64899759-64900720:-|nuORF	REV__ENST00000529207.5_1_11:64899759-64900720:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	539.282389	1076.55022	0.43877	0.00023662	2.3352	0.0012593	2.7739	0.0014959	539.2827018726168	42.896	0.53773	42.981	42.676	43.214	0.085197	-0.058512	0.00073165	NaN	11.64	39	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	474610	+		22453	21993	12559	12560							0.01501135235048423
LFDVRDEAL	9	Unmodified	_LFDVRDEAL_					0	0	0			REV__ENST00000529207.5_1_11:64899759-64900720:-|nuORF	REV__ENST00000529207.5_1_11:64899759-64900720:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	539.282389	1076.55022	0.30849	0.00016636	1.5436	0.00083245	1.8521	0.00099881	539.2824955261261	42.894	0.59036	42.986	42.607	43.198	0.091362	-0.053767	-0.00012207	NaN	11.64	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435390	+		22454	21993	12559	12560							0.01501135235048423
LFEAFLYAP	9	Unmodified	_LFEAFLYAP_					0	0	0		ENSG00000256061|ENST00000321149|DNAAF4;DYX1C1|p.L204Ffs*4|1|0.08|ENSG00000256061|chr15:55466955-55466956|-/A|frameshift_variant;ENST00000568310.1_1_15:55677902-55790527:-|nuORF;nc|ENSG00000256061|Q8WXU2-3|DNAAF4;nc|ENSG00000256061|Q8WXU2-2|DNAAF4;ENST00000565113.5_1_15:55681617-55790527:-|nuORF	ENSG00000256061|ENST00000321149|DNAAF4	ENSG00000256061|ENST00000321149|DNAAF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7728271484375	2	535.781493	1069.54843	0.4758	0.00025493	0.28162	0.00015089	0.75742	0.00040581	535.7824166652891	80.145	0.89793	80.118	79.806	80.704	-0.026825					58	31	3	0	0	0	0.193	1	20778	20778		24.674	2.9272	1	281180			22455	8623	12560	12561	28643	28643					0.016441262170928894
LFEAFLYAP	9	Unmodified	_LFEAFLYAP_					0	0	0		ENSG00000256061|ENST00000321149|DNAAF4;DYX1C1|p.L204Ffs*4|1|0.08|ENSG00000256061|chr15:55466955-55466956|-/A|frameshift_variant;ENST00000568310.1_1_15:55677902-55790527:-|nuORF;nc|ENSG00000256061|Q8WXU2-3|DNAAF4;nc|ENSG00000256061|Q8WXU2-2|DNAAF4;ENST00000565113.5_1_15:55681617-55790527:-|nuORF	ENSG00000256061|ENST00000321149|DNAAF4	ENSG00000256061|ENST00000321149|DNAAF4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	535.781493	1069.54843	0.46679	0.0002501	0.21406	0.00011469	0.68085	0.00036479	535.7823981999293	80.166	0.77029	80.166	79.742	80.513	0	0.019801	-6.8522E-05	NaN	24.674	56	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275950			22456	8623	12560	12561							0.016441262170928894
LFEAFLYAP	9	Unmodified	_LFEAFLYAP_					0	0	0		ENSG00000256061|ENST00000321149|DNAAF4;DYX1C1|p.L204Ffs*4|1|0.08|ENSG00000256061|chr15:55466955-55466956|-/A|frameshift_variant;ENST00000568310.1_1_15:55677902-55790527:-|nuORF;nc|ENSG00000256061|Q8WXU2-3|DNAAF4;nc|ENSG00000256061|Q8WXU2-2|DNAAF4;ENST00000565113.5_1_15:55681617-55790527:-|nuORF	ENSG00000256061|ENST00000321149|DNAAF4	ENSG00000256061|ENST00000321149|DNAAF4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	535.781493	1069.54843	0.2982	0.00015977	0.31672	0.00016969	0.61491	0.00032946	535.7825077319369	80.093	0.97327	80.154	79.749	80.722	0.061409	0.0082364	4.1483E-05	NaN	24.674	69	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238150			22457	8623	12560	12561							0.016441262170928894
LFEAFLYAP	9	Unmodified	_LFEAFLYAP_					0	0	0		ENSG00000256061|ENST00000321149|DNAAF4;DYX1C1|p.L204Ffs*4|1|0.08|ENSG00000256061|chr15:55466955-55466956|-/A|frameshift_variant;ENST00000568310.1_1_15:55677902-55790527:-|nuORF;nc|ENSG00000256061|Q8WXU2-3|DNAAF4;nc|ENSG00000256061|Q8WXU2-2|DNAAF4;ENST00000565113.5_1_15:55681617-55790527:-|nuORF	ENSG00000256061|ENST00000321149|DNAAF4	ENSG00000256061|ENST00000321149|DNAAF4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	535.781493	1069.54843	0.4758	0.00025493	0.28162	0.00015089	0.75742	0.00040581	535.7824166652891	80.145	0.89793	80.118	79.806	80.704	-0.026825	-0.028037	3.8743E-06	NaN	24.674	58	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281180			22458	8623	12560	12561							0.016441262170928894
LFEDTFVNF	9	Unmodified	_LFEDTFVNF_					0	0	0		ENST00000486276.1_1_13:50100422-50102798:+|nuORF;ENST00000488605.1_1_13:50096192-50101394:+|nuORF;nc|ENSG00000136147|Q9UIL8-2|PHF11;ENSG00000136147|ENST00000378319|PHF11	ENST00000486276.1_1_13:50100422-50102798:+|nuORF	ENST00000486276.1_1_13:50100422-50102798:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.2605590820312	2	566.27149	1130.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.581	1	55.652	55.152	56.152	0.070885								0	0	0	0.20238	1	13282	13282		21.747	0	1				22459	3946	12561	12562	28644	28644					-0.031616695135198825
LFEQGLAKF	9	Unmodified	_LFEQGLAKF_					0	0	0		ENSG00000162601|ENST00000472487|MYSM1;ENST00000401044.7_1_1:59134235-59156019:-|nuORF;MYSM1|p.E293Dfs*26|1|0.04|ENSG00000162601|chr1:58682165-58682166|-/CAGAAAAATTTGAATGATAA|frameshift_variant	ENSG00000162601|ENST00000472487|MYSM1	ENSG00000162601|ENST00000472487|MYSM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3026123046875	2	526.792392	1051.57023	0.4443	0.00023405	-2.5827	-0.0013606	-2.1384	-0.0011265	526.7918757470567	68.154	0.13661	68.226	68.134	68.271	0.071938					7	4	2	0	0	0	0.1669	1	17144	17144		28.487	2.1456	1	78245			22460	5585	12562	12563	28645	28645					0.0465093096563578
LFEQYFII	8	Unmodified	_LFEQYFII_					0	0	0			REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7894897460938	2	536.789318	1071.56408	0.60503	0.00032477	0.15694	8.4242E-05	0.76197	0.00040901	536.7894267821489	93.635	0.5938	93.634	93.399	93.993	-0.00051117					79	43	2	0	0	0	0.19197	1	24939	24939		44.407	8.3628	1	273750	+		22461	14406	12563	12564	28646	28646					0.031164127341526182
LFEQYFII	8	Unmodified	_LFEQYFII_					0	0	0			REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	536.789318	1071.56408	0.31543	0.00016932	0.62386	0.00033488	0.93929	0.0005042	536.7896548278193	93.558	0.48919	93.645	93.434	93.923	0.08667	0.0037304	0.00039271	NaN	44.407	68	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265220	+		22462	14406	12563	12564							0.031164127341526182
LFEQYFII	8	Unmodified	_LFEQYFII_					0	0	0			REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	REV__ENST00000521820.1_1_8:99208168-99217379:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	536.789318	1071.56408	0.60503	0.00032477	0.15694	8.4242E-05	0.76197	0.00040901	536.7894267821489	93.635	0.5938	93.634	93.399	93.993	-0.00051117	-0.0072655	-0.00010857	NaN	44.407	79	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273750	+		22463	14406	12563	12564							0.031164127341526182
LFESSFHYF	9	Unmodified	_LFESSFHYF_					0	0	0		ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.829833984375	2	588.771657	1175.52876	0.35916	0.00021146	0.10936	6.4386E-05	0.46852	0.00027585	588.77128847577	67.353	0.93162	67.431	67.068	68	0.078041					76	32	4	0	0	0	0.23783	1	17014	17014		12.532	2.4576	1	724640			22464	3352	12564	12565	28647	28647					-0.05198249793670584
LFESSFHYF	9	Unmodified	_LFESSFHYF_					0	0	0		ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.8300170898438	2	588.771657	1175.52876	0.27914	0.00016435	-0.10177	-5.992E-05	0.17737	0.00010443	589.2734659251255	67.551	1.106	67.534	67.181	68.287	-0.016296					58	38	2	0	0	0	0.081926	1	17035	17035		57.471	24.686	1	611740			22465	3352	12564	12565	28648	28648					-0.05198249793670584
LFEVLWPVT	9	Unmodified	_LFEVLWPVT_					0	0	0			REV__CDAN1|p.S1036Ffs*15|1|0.1|ENSG00000140326|chr15:42726407-42726408|-/AGAGCACGTCCTGTAA|frameshift_variant	REV__CDAN1|p.S1036Ffs*15|1|0.1|ENSG00000140326|chr15:42726407-42726408|-/AGAGCACGTCCTGTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.3106079101562	2	552.310418	1102.60628	0.2181	0.00012046	3.3912	0.001873	3.6093	0.0019935	552.3124718789579	26.163	0.33244	26.124	25.931	26.263	-0.038671					21	11	2	0	0	0	0.33276	1	4250	4250		3.9444	0.3479	1	76790	+		22466	13144	12565	12566	28649	28649					0.059083881425067375
LFFELLYL	8	Unmodified	_LFFELLYL_					0	0	0			REV__ENSG00000162881|ENST00000378661|OXER1	REV__ENSG00000162881|ENST00000378661|OXER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140258789062	2	529.302062	1056.58957	0.50313	0.00026631	-1.264	-0.00066904	-0.76087	-0.00040273	529.3014915417527	73.115	1.2347	73.115	72.56	73.795	0					87	44	2	0	0	0	0.29855	1	18510	18510		32.117	0	1	653180	+		22467	17017	12566	12567	28650	28650					0.06353887256545931
LFFELLYL	8	Unmodified	_LFFELLYL_					0	0	0			REV__ENSG00000162881|ENST00000378661|OXER1	REV__ENSG00000162881|ENST00000378661|OXER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8139038085938	2	529.302062	1056.58957	0.57512	0.00030441	-1.2788	-0.00067686	-0.70366	-0.00037245	529.3015556994148	73.127	1.29	73.098	72.566	73.856	-0.029305					108	46	3	0	0	0	0.27422	1	18516	18516		32.117	0	1	668860	+		22468	17017	12566	12567	28651	28651					0.06353887256545931
LFFIFLSYVLI	11	Unmodified	_LFFIFLSYVLI_					0	0	0		ENSG00000187918|ENST00000641930|OR51I2	ENSG00000187918|ENST00000641930|OR51I2	ENSG00000187918|ENST00000641930|OR51I2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.9345703125	3	458.940576	1373.7999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.012	1	45.087	44.587	45.587	0.075047								0	0	0	0.27915	1	10015	10015		23.801	4.1751	1				22469	7719	12567	12568	28652	28652					0.1279492485875835
LFFIHLFFK	9	Unmodified	_LFFIHLFFK_					0	0	0			REV__ENST00000511075.5_1_4:39457912-39460059:-|nuORF	REV__ENST00000511075.5_1_4:39457912-39460059:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.5702819824219	3	404.570706	1210.69029	-0.38764	-0.00015683	-0.57838	-0.000234	-0.96602	-0.00039082	404.57037795910213	15.341	0.41817	15.276	15.069	15.487	-0.064414					32	13	3	0	0	0	0.2615	1	1054	1054		2.4985	0	1	60216	+		22470	21804	12568	12569	28653	28653					0.09336964030080708
LFFILMVLR	9	Unmodified	_LFFILMVLR_					0	0	0		nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.354248046875	2	576.354105	1150.69366	0.074895	4.3166E-05	0.28244	0.00016279	0.35734	0.00020595	576.3542606514635	38.362	0.89455	38.362	38.064	38.958	0					90	31	4	0	0	0	0.1669	1	8062	8062		28.487	28.487	1	4329200			22471	12958	12569	12570	28654	28654					0.1243389081244004
LFFKNYPVS	9	Unmodified	_LFFKNYPVS_					0	0	0		chr13:48580956-48590486|341|10.09|0.0|19.94|-|2|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|1	chr13:48580956-48590486|341|10.09|0.0|19.94|-|2|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|1	chr13:48580956-48590486|341|10.09|0.0|19.94|-|2|TE_info:THE1B,THE1B_dup17574,ERVL-MaLR,LTR,acceptor,-,48580764,48580956|None,LINC00462|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8013305664062	2	557.800217	1113.58588	0.23339	0.00013019	2.8224	0.0015744	3.0558	0.0017045	557.8013964738237	17.749	0.36135	17.749	17.598	17.96	0					18	11	2	0	0	0	0.33508	1	1739	1739		3.5965	0.31518	1	46381			22472	136	12570	12571	28655	28655					0.033632174827062045
LFFLTKKRR	9	Unmodified	_LFFLTKKRR_					0	0	0		ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7-4|CD163;nc|ENSG00000177575|Q86VB7|CD163;nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF	ENSG00000177575|ENST00000432237|CD163	ENSG00000177575|ENST00000432237|CD163	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2468566894531	3	403.592392	1207.75535	0.19721	7.9591E-05	0.24274	9.7967E-05	0.43994	0.00017756	403.5924700416421	33.721	0.59201	33.721	33.512	34.104	0					32	21	2	0	0	0	0.26127	1	6533	6533		2.7352	1.7729	1	137610			22473	7000	12571	12572	28656	28656					0.15977958555913574
LFFLTKKRR	9	Unmodified	_LFFLTKKRR_					0	0	0		ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7-4|CD163;nc|ENSG00000177575|Q86VB7|CD163;nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF	ENSG00000177575|ENST00000432237|CD163	ENSG00000177575|ENST00000432237|CD163	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	403.592392	1207.75535	0.35145	0.00014184	0.39156	0.00015803	0.74301	0.00029987	403.9268430926094	33.861	0.69462	33.927	33.596	34.29	0.06636	0.10348	7.3289E-05	NaN	2.7352	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168550			22474	7000	12571	12572							0.15977958555913574
LFFQLKSF	8	Unmodified	_LFFQLKSF_					0	0	0			REV__ENST00000569674.1_1_1:108741669-108741831:-|nuORF	REV__ENST00000569674.1_1_1:108741669-108741831:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.255126953125	2	515.292028	1028.5695	0.22609	0.0001165	0.14629	7.538E-05	0.37238	0.00019189	515.2919763265292	65.371	0.63722	65.371	65.157	65.795	0					43	22	3	0	0	0	0.31375	1	16315	16315		26.341	4.5946	1	331570	+		22475	22404	12572	12573	28657	28657					0.05636136316616103
LFFRIFTPVV	10	Unmodified	_LFFRIFTPVV_					0	0	0		nc|ENSG00000172139|Q4G0N8-2|SLC9C1;ENSG00000172139|ENST00000305815|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8699340820312	2	619.868434	1237.72232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.613	1	94.613	94.113	95.113	0								0	0	0	0.38166	1	25237	25237		1.4819	0.15237	1				22476	6604	12573	12574	28658	28658					0.11296331713197105
LFFRLGML	8	Unmodified	_LFFRLGML_					0	0	0		ENST00000402983.5_1_1:109203628-109203694:-|nuORF	ENST00000402983.5_1_1:109203628-109203694:-|nuORF	ENST00000402983.5_1_1:109203628-109203694:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7886962890625	2	498.788598	995.562644	0.080201	4.0004E-05	0.242	0.00012071	0.3222	0.00016071	498.7885772086627	14.822	0.33126	14.822	14.649	14.981	0					20	11	2	0	0	0	0.45015	1	849	849		5.7604	0.52976	1	124600			22477	10205	12574	12575	28659	28659					0.06468500164396573
LFFRLGML	8	Unmodified	_LFFRLGML_					0	0	0		ENST00000402983.5_1_1:109203628-109203694:-|nuORF	ENST00000402983.5_1_1:109203628-109203694:-|nuORF	ENST00000402983.5_1_1:109203628-109203694:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7886047363281	2	498.788598	995.562644	0.13265	6.6163E-05	0.013275	6.6216E-06	0.14592	7.2784E-05	498.78854944320534	14.934	0.30836	14.825	14.646	14.955	-0.10981					20	10	2	0	0	0	0.45015	1	874	874		5.7604	1.0044	1	165140			22478	10205	12574	12575	28660	28660					0.06468500164396573
LFFSHFIL	8	Unmodified	_LFFSHFIL_					0	0	0			REV__ENST00000340979.10_1_1:159024760-159024901:+|nuORF	REV__ENST00000340979.10_1_1:159024760-159024901:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2799682617188	2	512.286746	1022.55894	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.72	1	63.72	63.22	64.22	0								0	0	0	0.048525	1	15798	15798		70.865	0	1		+		22479	20113	12575	12576	28661	28661					0.0485615366218326
LFFSHHKRT	9	Unmodified	_LFFSHHKRT_					0	0	0		nc|ENSG00000197808|Q8TAF7-2|ZNF461;ENSG00000197808|ENST00000588268|ZNF461	nc|ENSG00000197808|Q8TAF7-2|ZNF461	nc|ENSG00000197808|Q8TAF7-2|ZNF461	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8341674804688	2	586.819807	1171.62506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.343	1	79.343	78.843	79.843	0								0	0	0	0.24522	1	20570	20570		7.9102	1.187	1				22480	8000	12576	12577	28662	28662					0.04611362556943277
LFFTTLFFS	9	Unmodified	_LFFTTLFFS_					0	0	0		chr6:132684505-132686599|239|12.18|0.61|4.32|-|2|TE_info:HAL1,HAL1_dup9460,L1,LINE,donor,+,132686599,132687118|VNN1,None|2	chr6:132684505-132686599|239|12.18|0.61|4.32|-|2|TE_info:HAL1,HAL1_dup9460,L1,LINE,donor,+,132686599,132687118|VNN1,None|2	chr6:132684505-132686599|239|12.18|0.61|4.32|-|2|TE_info:HAL1,HAL1_dup9460,L1,LINE,donor,+,132686599,132687118|VNN1,None|2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7789916992188	2	561.797143	1121.57973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.028	1	92.118	91.618	92.618	0.090668								0	0	0	0.22065	1	24454	24454		15.847	3.3156	1				22481	171	12577	12578	28663	28663					0.023806992511708813
LFFYLSRM	8	Unmodified	_LFFYLSRM_					0	0	0			REV__FANCM|p.V541Gfs*9|1|0.05|ENSG00000187790|chr14:45164393-45164394|-/TTTGGGA|frameshift_variant	REV__FANCM|p.V541Gfs*9|1|0.05|ENSG00000187790|chr14:45164393-45164394|-/TTTGGGA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.783935546875	2	538.783513	1075.55247	0.22672	0.00012215	-0.1938	-0.00010442	0.032915	1.7734E-05	538.7834047642949	22.719	0.53031	22.631	22.379	22.909	-0.08761					44	18	3	0	0	0	0.45431	1	3276	3276		4.3292	0	1	112730	+		22482	18521	12578	12579	28664	28664					0.01771892439160183
LFFYMPIQL	9	Unmodified	_LFFYMPIQL_					0	0	0			REV__ENSG00000221931|ENST00000327930|OR6X1	REV__ENSG00000221931|ENST00000327930|OR6X1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813232421875	2	586.314646	1170.61474	0.40596	0.00023802	0.13647	8.0013E-05	0.54243	0.00031803	586.3145613139557	89.93	0.64571	89.93	89.659	90.305	0					95	54	2	0	0	0	0.25526	1	23815	23815		7.9102	7.9102	1	118580	+		22483	19099	12579	12580	28665	28665					0.03625618787486928
LFFYMPRRL	9	Unmodified	_LFFYMPRRL_					0	0	0			REV__ENSG00000279051|ENST00000302622|OR6Q1	REV__ENSG00000279051|ENST00000302622|OR6Q1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.8433837890625	2	621.844436	1241.67432	-0.10268	-6.385E-05	-0.80013	-0.00049756	-0.90281	-0.00056141	621.8437862991209	18.273	0.36737	18.156	17.957	18.325	-0.11739					23	12	2	0	0	0	0.33911	1	1929	1929		0	0	1	81038	+		22484	19352	12580	12581	28666	28666					0.06314934521537907
LFGASAGTIF	10	Unmodified	_LFGASAGTIF_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.8191833496094	2	492.263468	982.512382	0.40561	0.00019967	-0.11292	-5.5585E-05	0.2927	0.00014408	492.26334492910945	52.436	0.47623	52.436	52.267	52.743	0					26	16	2	0	0	0	0.31165	1	12295	12295		15.847	1.2655	1	368250			22485	4586	12581	12582	28667	28667					0.02042669040247347
LFGDQSIPF	9	Unmodified	_LFGDQSIPF_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.279541015625	2	512.260925	1022.5073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.384	1	63.384	62.884	63.884	0								0	0	0	0.19325	1	15695	15695		24.674	5.2349	1		+		22486	18559	12582	12583	28668	28668					-0.0030563482237084827
LFGGYVLFK	9	Unmodified	_LFGGYVLFK_					0	0	0		ENSG00000175782|ENST00000398004|SLC35E3	ENSG00000175782|ENST00000398004|SLC35E3	ENSG00000175782|ENST00000398004|SLC35E3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2831420898438	2	522.299853	1042.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.806	1	62.901	62.401	63.401	0.095722								0	0	0	0.22457	1	15510	15510		14.582	1.0738	1				22487	6883	12583	12584	28669	28669					0.06556422833659781
LFGVEYPSF	9	Unmodified	_LFGVEYPSF_					0	0	0			REV__ENSG00000159337|ENST00000290472|PLA2G4D	REV__ENSG00000159337|ENST00000290472|PLA2G4D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3316040039062	2	529.7633	1057.51205	0.44201	0.00023416	0.33308	0.00017645	0.77509	0.00041062	529.7633546269068	72.742	0.93693	72.796	72.51	73.447	0.053841					78	33	4	0	0	0	0.24739	1	18746	18746		13.508	7.1538	1	837480	+		22488	16846	12584	12585	28670	28670					-0.01440750679626035
LFHFTYYF	8	Unmodified	_LFHFTYYF_					0	0	0			REV__ENSG00000188833|ENST00000371506|ENTPD8	REV__ENSG00000188833|ENST00000371506|ENTPD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.2756958007812	2	569.273835	1136.53312	0.12749	7.2575E-05	1.8194	0.0010358	1.9469	0.0011083	569.275557730128	30.871	2.0445	30.898	30.638	32.683	0.027157					200	73	6	0	0	0	0.14465	1	5652	5652		52.693	1.838	1	21975000	+		22489	18576	12585	12586	28671	28671					-0.02968740580126905
LFHKQKLF	8	Unmodified	_LFHKQKLF_					0	0	0		TDRD10|p.R98Q|1|0.24|ENSG00000163239|chr1:154521403-154521403|G/A|missense_variant	TDRD10|p.R98Q|1|0.24|ENSG00000163239|chr1:154521403-154521403|G/A|missense_variant	TDRD10|p.R98Q|1|0.24|ENSG00000163239|chr1:154521403-154521403|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3319702148438	2	530.818744	1059.62294	0.66444	0.0003527	-1.0539	-0.00055941	-0.38942	-0.00020671	531.3208932660255	64.513	0.10953	64.504	64.443	64.552	-0.0095367					5	3	2	0	0	0	0.34046	1	16028	16028		14.582	4.3983	1	50724			22490	23387	12586	12587	28672	28672					0.09550933819105012
LFHLLMLFP	9	Unmodified	_LFHLLMLFP_					0	0	0			REV__ENST00000354883.10_1_3:66287106-66293659:+|nuORF	REV__ENST00000354883.10_1_3:66287106-66293659:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.3035278320312	2	565.825181	1129.63581	0.35008	0.00019809	3.4194	0.0019348	3.7695	0.0021329	566.3293291310989	53.519	0.62475	53.51	53.247	53.872	-0.0096054					61	23	4	0	0	0	0.25291	1	12695	12695		9.3474	1.4373	1	796790	+		22491	20178	12587	12588	28673	28673					0.07617628886987404
LFHPRSENQ	9	Unmodified	_LFHPRSENQ_					0	0	0			REV__nc|ENSG00000078674|Q15154-4|PCM1	REV__nc|ENSG00000078674|Q15154-4|PCM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.2842407226562	2	564.283254	1126.55196	0.14724	8.3084E-05	1.2326	0.00069556	1.3799	0.00077865	564.2838910097477	19.659	0.74816	19.659	19.267	20.016	0					36	26	2	0	0	0	0.26117	1	2287	2287		2.3027	0.4585	1	49885	+		22492	13859	12588	12589	28674	28674					-0.00625810956330497
LFHPRSENQ	9	Unmodified	_LFHPRSENQ_					0	0	0			REV__nc|ENSG00000078674|Q15154-4|PCM1	REV__nc|ENSG00000078674|Q15154-4|PCM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.283254	1126.55196	0.39417	0.00022242	0.61611	0.00034766	1.0103	0.00057008	564.2837546313498	19.839	0.83514	19.723	19.233	20.068	-0.11592	0.032905	-0.00039166	NaN	2.3027	53	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59008	+		22493	13859	12588	12589							-0.00625810956330497
LFHPRSENQ	9	Unmodified	_LFHPRSENQ_					0	0	0			REV__nc|ENSG00000078674|Q15154-4|PCM1	REV__nc|ENSG00000078674|Q15154-4|PCM1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	564.283254	1126.55196	0.35078	0.00019794	1.0566	0.00059625	1.4074	0.00079419	564.2839143857393	19.743	0.83514	19.687	19.227	20.062	-0.055691	-0.0025106	0.00010551	NaN	2.3027	46	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52809	+		22494	13859	12588	12589							-0.00625810956330497
LFHQKKNLQ	9	Unmodified	_LFHQKKNLQ_					0	0	0		ENST00000444720.1_1_13:21321226-21321529:-|nuORF	ENST00000444720.1_1_13:21321226-21321529:-|nuORF	ENST00000444720.1_1_13:21321226-21321529:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.2927856445312	2	578.33529	1154.65603	0.024433	1.4131E-05	-0.23485	-0.00013582	-0.21042	-0.00012169	578.3351617895595	46.325	0.67388	46.325	46.029	46.703	0					47	24	3	0	0	0	0.2451	1	10344	10344		15.847	1.9411	1	365940			22495	10577	12589	12590	28675	28675					0.08488515871181335
LFHQNSYFS	9	Unmodified	_LFHQNSYFS_					0	0	0			REV__ENST00000296292.7_1_3:53125644-53125815:-|nuORF	REV__ENST00000296292.7_1_3:53125644-53125815:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3246459960938	2	571.766906	1141.51926	0.36117	0.00020651	-1.1219	-0.00064147	-0.76073	-0.00043496	571.7657659303574	51.445	0.15427	51.445	51.327	51.481	0					7	5	2	0	0	0	0.25879	1	11972	11972		4.756	0	1	79060	+		22496	19791	12590	12591	28676	28676					-0.045840180791856255
LFIATSQKF	9	Unmodified	_LFIATSQKF_					0	0	0		nc|ENSG00000025770|Q6IBW4-2|NCAPH2;ENSG00000025770|ENST00000420993|NCAPH2;nc|ENSG00000025770|Q6IBW4-4|NCAPH2	nc|ENSG00000025770|Q6IBW4-2|NCAPH2	nc|ENSG00000025770|Q6IBW4-2|NCAPH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2905883789062	2	527.800217	1053.58588	0.476	0.00025123	0.81929	0.00043242	1.2953	0.00068365	527.8006662438531	51.857	0.59247	51.857	51.619	52.211	0					39	21	2	0	0	0	0.12563	1	12220	12220		47.749	13.646	1	1626800			22497	534	12591	12592	28677	28677					0.06123217482695509
LFIATSQKF	9	Unmodified	_LFIATSQKF_					0	0	0		nc|ENSG00000025770|Q6IBW4-2|NCAPH2;ENSG00000025770|ENST00000420993|NCAPH2;nc|ENSG00000025770|Q6IBW4-4|NCAPH2	nc|ENSG00000025770|Q6IBW4-2|NCAPH2	nc|ENSG00000025770|Q6IBW4-2|NCAPH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.80078125	2	527.800217	1053.58588	0.45808	0.00024177	0.76217	0.00040227	1.2202	0.00064405	527.8006181738664	51.833	0.63127	51.883	51.65	52.282	0.050125					52	22	3	0	0	0	7.3453E-05	1	12149	12149		145.13	84.74	1	1794200			22498	534	12591	12592	28678	28678					0.06123217482695509
LFIAYAHF	8	Unmodified	_LFIAYAHF_					0	0	0			REV__ENSG00000124212|ENST00000244043|PTGIS	REV__ENSG00000124212|ENST00000244043|PTGIS	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.2540283203125	2	491.263271	980.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.054	1	28.05	27.55	28.55	-0.0042572								0	0	0	0.34461	1	4846	4846		17.087	1.2394	1		+		22499	15222	12592	12593	28679	28679					0.020952941110294887
LFIELVRKSD	10	Unmodified	_LFIELVRKSD_					0	0	0			REV__ENST00000496647.5_1_3:69038048-69050774:-|nuORF	REV__ENST00000496647.5_1_3:69038048-69050774:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.23956298828125	3	407.239684	1218.69722	0.0072132	2.9375E-06	-0.088871	-3.6192E-05	-0.081658	-3.3254E-05	407.2396750088866	48.68	0.5119	48.712	48.471	48.983	0.032043					42	18	3	0	0	0	0.35961	1	11226	11226		10.899	2.1472	1	815870	+		22500	21674	12593	12594	28680	28680					0.09662232119990222
LFIFFSVTF	9	Unmodified	_LFIFFSVTF_					0	0	0		ENST00000460863.1_1_2:114500256-114501404:-|nuORF	ENST00000460863.1_1_2:114500256-114501404:-|nuORF	ENST00000460863.1_1_2:114500256-114501404:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.306640625	2	560.807511	1119.60047	0.17961	0.00010073	-2.3371	-0.0013106	-2.1574	-0.0012099	560.8054027643465	93.44	0.2718	93.44	93.291	93.563	0					32	25	2	0	0	0	0.25202	1	24908	24908		10.824	3.215	1	69208			22501	10738	12594	12595	28681	28681					0.04545289630846128
LFIFPFRPY	9	Unmodified	_LFIFPFRPY_					0	0	0			REV__ENSG00000166930|ENST00000300190|MS4A5	REV__ENSG00000166930|ENST00000300190|MS4A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.8362426757812	2	600.334227	1198.6539	0.44733	0.00026855	0.047011	2.8222E-05	0.49434	0.00029677	600.3342186629694	82.167	1.7056	82.236	81.53	83.235	0.068985					121	70	2	0	0	0	0.32415	1	21267	21267		5.2307	0	1	335590	+		22502	17349	12595	12596	28682	28682					0.06252087133384521
LFIFPFRPY	9	Unmodified	_LFIFPFRPY_					0	0	0			REV__ENSG00000166930|ENST00000300190|MS4A5	REV__ENSG00000166930|ENST00000300190|MS4A5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	600.334227	1198.6539	0.51851	0.00031128	-0.12705	-7.6271E-05	0.39146	0.00023501	600.334221089419	82.196	1.5803	82.196	81.32	82.9	0	-0.018007	-0.00021458	NaN	5.2307	82	61	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222120	+		22503	17349	12595	12596							0.06252087133384521
LFIFVVCGSAI	11	Unmodified	_LFIFVVCGSAI_					0	0	0		ENSG00000120742|ENST00000239944|SERP1	ENSG00000120742|ENST00000239944|SERP1	ENSG00000120742|ENST00000239944|SERP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.3279418945312	2	584.825378	1167.6362	0.17433	0.00010195	0.61084	0.00035723	0.78516	0.00045918	584.8261406304408	94.82	0.75051	94.903	94.44	95.191	0.082779					123	63	3	0	0	0	0.43831	1	25301	25301		6.2058	1.8765	1	224900			22504	2964	12596	12597	28683	28683					0.05909003816236691
LFIFYYFI	8	Unmodified	_LFIFYYFI_					0	0	0			REV__chr6:132684505-132686599|239|12.18|0.61|4.32|-|1|TE_info:HAL1,HAL1_dup9460,L1,LINE,donor,+,132686599,132687118|VNN1,None|3	REV__chr6:132684505-132686599|239|12.18|0.61|4.32|-|1|TE_info:HAL1,HAL1_dup9460,L1,LINE,donor,+,132686599,132687118|VNN1,None|3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3514404296875	2	563.304604	1124.59466	0.47379	0.00026689	-3.9355	-0.0022169	-3.4617	-0.00195	563.3040822791347	85.751	1.4344	85.751	85.015	86.45	0					109	54	3	0	0	0	0.29242	1	22525	22525		32.454	0	1	159820	+		22505	13209	12597	12598	28684	28684					0.03734191119178831
LFILHGPI	8	Unmodified	_LFILHGPI_					0	0	0			REV__ENSG00000136052|ENST00000258538|SLC41A2	REV__ENSG00000136052|ENST00000258538|SLC41A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.7658386230469	2	455.281463	908.548374	0.19664	8.9528E-05	-0.017454	-7.9467E-06	0.17919	8.1581E-05	455.28147178148544	64.689	0.74479	64.782	64.582	65.327	0.09288					45	27	2	0	0	0	0.33618	1	16229	16229		17.087	0	1	166790	+		22506	15786	12598	12599	28685	28685					0.09044171007747082
LFINGYLII	9	Unmodified	_LFINGYLII_					0	0	0			REV__ENSG00000146383|ENST00000275198|TAAR6	REV__ENSG00000146383|ENST00000275198|TAAR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.261474609375	2	533.320786	1064.62702	0.63849	0.00034052	-1.7365	-0.00092613	-1.0981	-0.00058561	533.319855127847	88.332	0.5745	88.332	88.098	88.672	0					52	31	2	0	0	0	0.17611	1	23303	23303		34.102	3.4659	1	124200	+		22507	16346	12599	12600	28686	28686					0.09728978522184661
LFIQGDFSF	9	Unmodified	_LFIQGDFSF_					0	0	0			REV__ENSG00000131015|ENST00000367351|ULBP2	REV__ENSG00000131015|ENST00000367351|ULBP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2520141601562	2	537.26875	1072.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.9	1	65.9	65.4	66.4	0								0	0	0	0.22065	1	16465	16465		15.847	1.0089	1		+		22508	15494	12600	12601	28687	28687					-0.010413483053298478
LFIRRQQDTL	10	Unmodified	_LFIRRQQDTL_					0	0	0			REV__ENST00000587125.1_1_17:58040633-58079710:-|nuORF	REV__ENST00000587125.1_1_17:58040633-58079710:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.5821228027344	3	430.582333	1288.72517	0.16289	7.0138E-05	-0.97629	-0.00042037	-0.8134	-0.00035024	430.58192952059096	31.962	0.89434	32.004	31.768	32.662	0.042364					64	31	3	0	0	0	0.26265	2	6024	6024;6082		17.049	5.4172	1	1502900	+		22509	22530	12601	12602	28688;28689	28688					0.09235555100099191
LFISFNMWSEA	11	Unmodified	_LFISFNMWSEA_					0	0	0			REV__ENST00000506441.1_1_5:16483394-16508721:-|nuORF	REV__ENST00000506441.1_1_5:16483394-16508721:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.88140869140625	3	448.88128	1343.62201	-0.010971	-4.9246E-06	-0.2628	-0.00011796	-0.27377	-0.00012289	448.8811911911673	26.05	0.9631	26.011	25.783	26.746	-0.038671					89	33	4	0	0	0	0.45822	1	4216	4216		3.5927	0	1	310750	+		22510	16649	12602	12603	28690	28690					-0.03605693402732868
LFIVYFLI	8	Unmodified	_LFIVYFLI_					0	0	0			REV__nc|ENSG00000185652|P20783|NTF3	REV__nc|ENSG00000185652|P20783|NTF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7826538085938	2	514.314972	1026.61539	0.16435	8.4528E-05	3.3826	0.0017397	3.547	0.0018243	514.3168094093289	32.956	0.32789	33.01	32.818	33.146	0.054371					15	11	2	0	0	0	0.34147	1	6320	6320		11.114	0	1	87692	+		22511	18395	12603	12604	28691	28691					0.1031478149884606
LFIVYFLI	8	Unmodified	_LFIVYFLI_					0	0	0			REV__nc|ENSG00000185652|P20783|NTF3	REV__nc|ENSG00000185652|P20783|NTF3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	514.314972	1026.61539	0.21868	0.00011247	2.9795	0.0015324	3.1981	0.0016448	514.3165891416396	33.075	0.30939	33.075	32.865	33.174	0	0.04215	-0.00021442	NaN	11.114	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131320	+		22512	18395	12603	12604							0.1031478149884606
LFIVYFLI	8	Unmodified	_LFIVYFLI_					0	0	0			REV__nc|ENSG00000185652|P20783|NTF3	REV__nc|ENSG00000185652|P20783|NTF3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	514.314972	1026.61539	0.18981	9.7624E-05	3.4692	0.0017843	3.659	0.0018819	514.3170863118542	32.958	0.27869	33.013	32.864	33.143	0.055309	-0.019873	0.00028934	NaN	11.114	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93712	+		22513	18395	12603	12604							0.1031478149884606
LFIWFVFI	8	Unmodified	_LFIWFVFI_					0	0	0			REV__ENSG00000112706|ENST00000369950|IMPG1	REV__ENSG00000112706|ENST00000369950|IMPG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7909545898438	2	542.815139	1083.61573	0.49779	0.00027021	2.1351	0.0011589	2.6329	0.0014292	543.3180557632971	24.732	0.5423	24.676	24.376	24.918	-0.055931					28	18	2	0	0	0	0.34297	1	3801	3801		6.3541	0	1	97560	+		22514	14785	12604	12605	28692	28692					0.07726201218702045
LFIYFPSHI	9	Unmodified	_LFIYFPSHI_					0	0	0		ENST00000510650.5_1_5:42806855-42811951:-|nuORF;ENST00000512980.5_1_5:42806855-42808275:-|nuORF	ENST00000510650.5_1_5:42806855-42811951:-|nuORF	ENST00000510650.5_1_5:42806855-42811951:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2772827148438	2	568.810585	1135.60662	0.31477	0.00017905	-2.6504	-0.0015076	-2.3357	-0.0013286	568.8089365890463	76.863	0.88904	76.917	76.54	77.429	0.054214					72	31	4	0	0	0	0.21137	1	19821	19821		24.674	6.5389	1	689900			22515	11374	12605	12606	28693	28693					0.04423807862372087
LFIYFPSHI	9	Unmodified	_LFIYFPSHI_					0	0	0		ENST00000510650.5_1_5:42806855-42811951:-|nuORF;ENST00000512980.5_1_5:42806855-42808275:-|nuORF	ENST00000510650.5_1_5:42806855-42811951:-|nuORF	ENST00000510650.5_1_5:42806855-42811951:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2769165039062	2	568.810585	1135.60662	0.50538	0.00028747	-2.834	-0.001612	-2.3286	-0.0013245	568.8087023038606	76.932	0.86736	76.9	76.395	77.262	-0.031334					83	31	4	0	0	0	0.18943	1	19892	19892		30.225	7.0764	1	812160			22516	11374	12605	12606	28694	28694					0.04423807862372087
LFIYSIGG	8	Unmodified	_LFIYSIGG_					0	0	0			REV__ENST00000435287.1_1_6:132272117-132398394:+|nuORF	REV__ENST00000435287.1_1_6:132272117-132398394:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2510681152344	2	435.242004	868.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.179	1	69.16	68.66	69.66	-0.019157								0	0	0	0.36169	1	17456	17456		9.3474	0	1		+		22517	20995	12606	12607	28695	28695					0.0299589898281738
LFIYSIGG	8	Unmodified	_LFIYSIGG_					0	0	0			REV__ENST00000435287.1_1_6:132272117-132398394:+|nuORF	REV__ENST00000435287.1_1_6:132272117-132398394:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2507629394531	2	435.242004	868.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.824	1	69.802	69.302	70.302	-0.022087								0	0	0	0.36961	1	17652	17652		5.7604	0	1		+		22518	20995	12606	12607	28696	28696					0.0299589898281738
LFIYSIGG	8	Unmodified	_LFIYSIGG_					0	0	0			REV__ENST00000435287.1_1_6:132272117-132398394:+|nuORF	REV__ENST00000435287.1_1_6:132272117-132398394:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2509460449219	2	435.242004	868.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.977	1	69.955	69.455	70.455	-0.022087								0	0	0	0.36961	1	17699	17699		5.7604	0.52976	1		+		22519	20995	12606	12607	28697	28697					0.0299589898281738
LFKCLYNITG	10	Unmodified	_LFKCLYNITG_					0	0	0			REV__nc|ENSG00000205045|Q6IEE8|SLFN12L	REV__nc|ENSG00000205045|Q6IEE8|SLFN12L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8132934570312	2	586.312635	1170.61072	0.056878	3.3348E-05	3.1667	0.0018567	3.2235	0.00189	586.3139166240874	100.61	0.14394	100.65	100.61	100.75	0.038994					32	19	2	0	0	0	0.31889	1	26889	26889		6.2058	1.8765	1	108890	+		22520	18978	12607	12608	28698	28698					0.032235292937457416
LFKELRKTAI	10	Unmodified	_LFKELRKTAI_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.55682373046875	3	406.923807	1217.74959	-0.075029	-3.0531E-05	-1.3073	-0.00053195	-1.3823	-0.00056248	406.92340772981373	38.133	0.22605	38.133	37.98	38.206	0					13	7	2	0	0	0	0.31911	1	7927	7927		6.6304	3.7871	1	97730			22521	8289	12608	12609	28699	28699					0.14942815253607478
LFKELRKTAI	10	Unmodified	_LFKELRKTAI_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.55645751953125	3	406.923807	1217.74959	0.022845	9.2961E-06	-1.0789	-0.00043903	-1.0561	-0.00042974	406.92369830171504	38.089	0.41254	38.18	37.934	38.347	0.090881					18	14	2	0	0	0	0.31696	1	7884	7884		10.151	3.5202	1	101130			22522	8289	12608	12609	28700	28700					0.14942815253607478
LFKKFRFLA	9	Unmodified	_LFKKFRFLA_					0	0	0		ENST00000398868.7_1_11:63392322-63392604:-|nuORF	ENST00000398868.7_1_11:63392322-63392604:-|nuORF	ENST00000398868.7_1_11:63392322-63392604:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813232421875	2	585.363319	1168.71209	0.387	0.00022654	1.1634	0.000681	1.5504	0.00090754	585.3638768549773	90.182	0.38489	90.182	89.92	90.305	0					51	32	2	0	0	0	0.25879	1	23815	23815		4.756	2.4533	1	99800			22523	10173	12609	12610	28701	28701					0.134477687786557
LFKKYIKLQAK	11	Unmodified	_LFKKYIKLQAK_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.2554626464844	3	460.630624	1378.87004	-0.15379	-7.0841E-05	1.138	0.00052419	0.9842	0.00045335	460.63098447998107	41.238	0.42179	41.238	40.96	41.382	0					21	15	2	0	0	0	0.3322	1	8878	8878		2.6312	0	1	145110	+		22524	13586	12610	12611	28702	28702					0.1957622324721342
LFKNDPLFF	9	Unmodified	_LFKNDPLFF_					0	0	0		nc|ENSG00000103642|P83111-2|LACTB;ENSG00000103642|ENST00000261893|LACTB	nc|ENSG00000103642|P83111-2|LACTB	nc|ENSG00000103642|P83111-2|LACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8080444335938	2	570.808042	1139.60153	0.29377	0.00016769	1.7847	0.0010187	2.0785	0.0011864	570.8094604738399	71.431	2.0657	71.431	71.015	73.081	0					116	74	4	0	0	0	0.0024096	2	18132	18132;18158		106.94	60.919	1	1365700			22525	1847	12611	12612	28703;28704	28703					0.03731503999733832
LFKNDPLFF	9	Unmodified	_LFKNDPLFF_					0	0	0		nc|ENSG00000103642|P83111-2|LACTB;ENSG00000103642|ENST00000261893|LACTB	nc|ENSG00000103642|P83111-2|LACTB	nc|ENSG00000103642|P83111-2|LACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8087768554688	2	570.808042	1139.60153	0.38806	0.00022151	2.0951	0.0011959	2.4832	0.0014174	570.8095195304131	71.403	2.0292	71.462	70.985	73.014	0.058456					135	73	2	0	0	0	0.0028542	3	18151	18100;18151;18174		103.42	52.564	1	1116600			22526	1847	12611	12612	28705;28706;28707	28706					0.03731503999733832
LFKNDPLFF	9	Unmodified	_LFKNDPLFF_					0	0	0		nc|ENSG00000103642|P83111-2|LACTB;ENSG00000103642|ENST00000261893|LACTB	nc|ENSG00000103642|P83111-2|LACTB	nc|ENSG00000103642|P83111-2|LACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.807861328125	2	570.808042	1139.60153	0.34978	0.00019966	1.8225	0.0010403	2.1723	0.00124	570.809353250996	71.497	1.9424	71.47	71.185	73.128	-0.027275					153	69	3	0	0	0	0.0054984	2	18135	18135;18185		86.332	35.477	1	1418400			22527	1847	12611	12612	28708;28709	28708					0.03731503999733832
LFKVKTLLSGQ	11	Unmodified	_LFKVKTLLSGQ_					0	0	0		ENST00000303657.9_1_19:5993631-5994159:-|nuORF	ENST00000303657.9_1_19:5993631-5994159:-|nuORF	ENST00000303657.9_1_19:5993631-5994159:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2364807128906	3	411.923696	1232.74926	-0.26533	-0.0001093	2.4502	0.0010093	2.1849	0.0009	411.92464045513134	12.87	0.20212	12.803	12.734	12.936	-0.067496					9	6	2	0	0	0	0.3331	1	244	244		2.2527	1.6259	1	29741			22528	9253	12612	12613	28710	28710					0.14219395533746138
LFKVVSLW	8	Unmodified	_LFKVVSLW_					0	0	0			REV__ENSG00000163686|ENST00000478253|ABHD6	REV__ENSG00000163686|ENST00000478253|ABHD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7501220703125	2	496.302396	990.590239	0.53842	0.00026722	2.4796	0.0012306	3.018	0.0014978	496.30358355556854	83.163	0.10406	83.142	83.053	83.157	-0.020584					5	3	2	0	0	0	0.34147	1	21728	21728		11.114	0	1	53779	+		22529	17081	12613	12614	28711	28711					0.09456726696282658
LFLASGCWF	9	Unmodified	_LFLASGCWF_					0	0	0		ENSG00000203661|ENST00000641363|OR2T5;ENSG00000182783|ENST00000641069|OR2T29	ENSG00000203661|ENST00000641363|OR2T5	ENSG00000203661|ENST00000641363|OR2T5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.267578125	2	522.254588	1042.49462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.436	1	89.435	88.935	89.935	-0.00080872								0	0	0	0.22789	1	23654	23654		13.508	5.5977	1				22530	7318	12614	12615	28712	28712					-0.024923694862764023
LFLATSFMHY	10	Unmodified	_LFLATSFMHY_					0	0	0			REV__ENST00000357992.8_1_1:205581207-205581300:-|nuORF	REV__ENST00000357992.8_1_1:205581207-205581300:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.9048156738281	3	410.538965	1228.59507	0.067052	2.7527E-05	2.643	0.0010851	2.7101	0.0011126	410.5401367614083	35.799	0.23948	35.799	35.693	35.932	0					13	8	2	0	0	0	0.31876	1	7222	7222		4.1895	0	1	95987	+		22531	20225	12615	12616	28713	28713					-0.010087572232578168
LFLCSLCFIL	10	Unmodified	_LFLCSLCFIL_					0	0	0			REV__ENST00000261332.10_1_18:32920541-32920667:-|nuORF	REV__ENST00000261332.10_1_18:32920541-32920667:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3148193359375	2	586.316331	1170.61811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.571	1	88.568	88.068	89.068	-0.0028381								0	0	0	0.36787	1	23390	23390		7.2892	1.5574	1		+		22532	19589	12616	12617	28714	28714					0.03962545569856957
LFLCTFLK	8	Unmodified	_LFLCTFLK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.6739501953125	2	492.782982	983.55141	0.1868	9.205E-05	-0.8438	-0.00041581	-0.657	-0.00032376	492.78231047999805	19.164	0.54859	19.108	18.903	19.452	-0.055693					31	18	3	0	0	0	0.34131	1	2173	2173		12.532	3.9383	1	56898			22533	1211	12617	12618	28715	28715					0.058976780702323595
LFLCYLLLF	9	Unmodified	_LFLCYLLLF_					0	0	0		ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6	ENSG00000126709|ENST00000361157|IFI6	ENSG00000126709|ENST00000361157|IFI6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3531494140625	2	572.827389	1143.64023	0.3591	0.0002057	-1.6547	-0.00094783	-1.2956	-0.00074213	572.8264652075455	72.517	0.70322	72.488	72.115	72.818	-0.029305					42	24	2	0	0	0	0.19319	1	18519	18519		28.173	0	1	208770			22534	3283	12618	12619	28716	28716					0.07415093309896292
LFLFTTPCRL	10	Unmodified	_LFLFTTPCRL_					0	0	0		nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.8367309570312	2	605.836277	1209.658	0.39042	0.00023653	0.14346	8.6915E-05	0.53388	0.00032344	605.8362214123829	24.161	0.338	24.161	24.029	24.367	0					20	11	2	0	0	0	0.411	1	3703	3703		1.1933	0.12188	1	43593			22535	3218	12619	12620	28717	28717					0.0615580856476754
LFLFVQVDF	9	Unmodified	_LFLFVQVDF_					0	0	0			REV__ENSG00000181698|ENST00000641665|OR5T1	REV__ENSG00000181698|ENST00000641665|OR5T1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8206787109375	2	564.310418	1126.60628	0.24579	0.0001387	-4.2445	-0.0023952	-3.9987	-0.0022565	564.3081450266134	81.579	0.45914	81.579	81.338	81.797	0					29	19	2	0	0	0	0.15219	1	21226	21226		30.637	8.8899	1	208510	+		22536	18161	12620	12621	28718	28718					0.04804388142520111
LFLGGFLLGP	10	Unmodified	_LFLGGFLLGP_					0	0	0			REV__ENST00000325404.2_1_3:181431262-181431475:+|nuORF	REV__ENST00000325404.2_1_3:181431262-181431475:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.9855346679688	2	517.307678	1032.6008	0.19118	9.8901E-05	0.76682	0.00039668	0.958	0.00049558	517.3081928605592	45.762	0.53552	45.822	45.536	46.072	0.059834					28	18	2	0	0	0	0.28208	1	10298	10298		18.135	1.1927	1	253700	+		22537	19998	12621	12622	28719	28719					0.08580709350690086
LFLGGSVLLF	10	Unmodified	_LFLGGSVLLF_					0	0	0		ENST00000448810.5_1_5:131726469-131729504:+|nuORF;nc|ENSG00000197375|O76082-2|SLC22A5;ENST00000475308.1_1_5:131726319-131729961:+|nuORF;ENST00000461013.5_1_5:131719758-131729961:+|nuORF;ENSG00000197375|ENST00000245407|SLC22A5;nc|ENSG00000197375|O76082-3|SLC22A5	ENST00000448810.5_1_5:131726469-131729504:+|nuORF	ENST00000448810.5_1_5:131726469-131729504:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.31982421875	2	533.320786	1064.62702	0.41537	0.00022153	-1.7165	-0.00091543	-1.3011	-0.0006939	533.3196836195036	88.217	0.51117	88.306	88.107	88.618	0.089195					38	23	2	0	0	0	0.30079	1	23286	23286		20.454	0	1	177170			22538	7957	12622	12623	28720	28720					0.09728978522161924
LFLIDPSHI	9	Unmodified	_LFLIDPSHI_					0	0	0			REV__ENST00000318948.6_1_21:16335255-16335369:-|nuORF	REV__ENST00000318948.6_1_21:16335255-16335369:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.290283203125	2	527.800217	1053.58588	0.2928	0.00015454	0.97693	0.00051562	1.2697	0.00067017	527.8007436742645	51.931	0.67475	51.93	51.71	52.385	-0.00080872					57	24	3	0	0	0	0.21905	1	12280	12280		23.148	0	1	1849200	+		22539	19954	12623	12624	28721	28721					0.06123217482695509
LFLKAFVM	8	Unmodified	_LFLKAFVM_					0	0	0			REV__ENST00000394434.6_1_5:145493386-145493509:-|nuORF	REV__ENST00000394434.6_1_5:145493386-145493509:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.78533935546875	2	484.785524	967.556496	0.16937	8.2108E-05	-0.11881	-5.7597E-05	0.050562	2.4512E-05	484.78544028947846	17.612	0.61865	17.612	17.341	17.96	0					35	20	2	0	0	0	0.43727	1	1696	1696		10.183	4.423	1	97440	+		22540	20619	12624	12625	28722	28722					0.07141981932875296
LFLKAFVM	8	Unmodified	_LFLKAFVM_					0	0	0			REV__ENST00000394434.6_1_5:145493386-145493509:-|nuORF	REV__ENST00000394434.6_1_5:145493386-145493509:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	484.785524	967.556496	0.16937	8.2108E-05	-0.11881	-5.7597E-05	0.050562	2.4512E-05	484.78544028947846	17.612	0.61865	17.612	17.341	17.96	0	-0.071307	-8.6953E-05	NaN	10.183	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97440	+		22541	20619	12624	12625							0.07141981932875296
LFLKAFVM	8	Unmodified	_LFLKAFVM_					0	0	0			REV__ENST00000394434.6_1_5:145493386-145493509:-|nuORF	REV__ENST00000394434.6_1_5:145493386-145493509:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	484.785524	967.556496	0.043139	2.0913E-05	0.086325	4.1849E-05	0.12946	6.2763E-05	484.7855824950026	17.817	0.65672	17.699	17.355	18.012	-0.11739	0.016212	0.00011194	NaN	10.183	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94855	+		22542	20619	12624	12625							0.07141981932875296
LFLLCFKI	8	Unmodified	_LFLLCFKI_					0	0	0		ENST00000505490.2_1_17:79845792-79845960:-|nuORF	ENST00000505490.2_1_17:79845792-79845960:-|nuORF	ENST00000505490.2_1_17:79845792-79845960:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.8006286621094	2	498.801174	995.587796	0.44893	0.00022393	-1.2422	-0.00061961	-0.79326	-0.00039568	498.8004939441164	21.291	0.60125	21.291	21.052	21.654	0					41	20	3	0	0	0	0.42758	1	2810	2810		13.508	0	1	104020			22543	11315	12625	12626	28723	28723					0.08982554966974021
LFLLCFKI	8	Unmodified	_LFLLCFKI_					0	0	0		ENST00000505490.2_1_17:79845792-79845960:-|nuORF	ENST00000505490.2_1_17:79845792-79845960:-|nuORF	ENST00000505490.2_1_17:79845792-79845960:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.800537109375	2	498.801174	995.587796	0.39874	0.00019889	-1.0192	-0.00050839	-0.62049	-0.0003095	498.80062239746184	21.405	0.53812	21.355	21.066	21.604	-0.049377					35	18	2	0	0	0	0.42758	1	2819	2819		13.508	0	1	108110			22544	11315	12625	12626	28724	28724					0.08982554966974021
LFLLFFIHQ	9	Unmodified	_LFLLFFIHQ_					0	0	0			REV__nc|ENSG00000262085|Q8NH06|OR1P1	REV__nc|ENSG00000262085|Q8NH06|OR1P1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3412475585938	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.66	1	115.64	115.14	116.14	-0.020988								0	0	0	0.26704	1	29987	29987		0.6015	0	1		+		22545	23228	12626	12627	28725	28725					0.08828373650408139
LFLLFKKKKEL	11	Unmodified	_LFLLFKKKKEL_					0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.27679443359375	3	469.642641	1405.90609	0.24061	0.000113	0.7807	0.00036665	1.0213	0.00047965	469.6430028657384	39.698	0.70649	39.79	39.662	40.369	0.09267					35	24	2	0	0	0	0.33347	1	8573	8573		0.45452	0.37117	1	177430	+		22546	15937	12627	12628	28726	28726					0.21937680424071004
LFLLLKDY	8	Unmodified	_LFLLLKDY_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.78173828125	2	512.807511	1023.60047	0.38197	0.00019588	-3.4662	-0.0017775	-3.0842	-0.0015816	512.8069064107511	85.89	0.38342	85.974	85.726	86.109	0.084251					14	13	2	0	0	0	0.34147	1	22506	22506		11.114	0.29054	1	43573			22547	2965	12628	12629	28727	28727					0.0896128963083811
LFLLQKCEF	9	Unmodified	_LFLLQKCEF_					0	0	0		ENST00000497212.1_1_2:231265972-231266179:+|nuORF;ENST00000483728.5_1_2:231265972-231267608:+|nuORF	ENST00000497212.1_1_2:231265972-231266179:+|nuORF	ENST00000497212.1_1_2:231265972-231266179:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7999267578125	2	570.809728	1139.6049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.66	1	75.712	75.212	76.212	0.052361								0	0	0	0.21726	1	19440	19440		16.942	0	1				22548	11065	12629	12630	28728	28728					0.0406843078210386
LFLLTKMIT	9	Unmodified	_LFLLTKMIT_					0	0	0		ENST00000360864.8_1_20:62564729-62564939:+|nuORF	ENST00000360864.8_1_20:62564729-62564939:+|nuORF	ENST00000360864.8_1_20:62564729-62564939:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3300170898438	2	540.330296	1078.64604	0.74077	0.00040026	-0.78665	-0.00042505	-0.045873	-2.4787E-05	540.3297111943032	83.548	0.86538	83.531	83.031	83.896	-0.016823					63	36	2	0	0	0	0.32733	1	21827	21827		4.756	4.756	1	189330			22549	9685	12630	12631	28729	28729					0.1098619182157563
LFLNKKDVF	9	Unmodified	_LFLNKKDVF_					0	0	0		ENSG00000114349|ENST00000232461|GNAT1	ENSG00000114349|ENST00000232461|GNAT1	ENSG00000114349|ENST00000232461|GNAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3190307617188	2	562.329142	1122.64373	0.32433	0.00018238	0.26313	0.00014796	0.58746	0.00033035	562.3292178197048	71.385	0.78516	71.385	71.07	71.855	0					63	27	3	0	0	0	0.26879	1	18090	18090		13.508	4.1604	1	1171000			22550	2558	12631	12632	28730	28730					0.08731479408129417
LFLNKKDVF	9	Unmodified	_LFLNKKDVF_					0	0	0		ENSG00000114349|ENST00000232461|GNAT1	ENSG00000114349|ENST00000232461|GNAT1	ENSG00000114349|ENST00000232461|GNAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.3193359375	2	562.329142	1122.64373	0.35781	0.00020121	0.28906	0.00016255	0.64687	0.00036375	562.3293265461892	71.477	0.68834	71.45	71.157	71.845	-0.027275					57	24	4	0	0	0	0.26879	1	18126	18126		13.508	0	1	1230000			22551	2558	12631	12632	28731	28731					0.08731479408129417
LFLPRTDYSF	10	Unmodified	_LFLPRTDYSF_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.826904296875	2	629.826963	1257.63937	0.35551	0.00022391	-0.14211	-8.9507E-05	0.21339	0.0001344	629.8268696530604	68.073	1.0019	68.073	67.706	68.708	0					78	36	4	0	0	0	0.024262	2	17102	17102;17152		67.081	34.295	1	1525200			22552	8471	12632	12633	28732;28733	28732					0.020859701945255438
LFLPRTDYSF	10	Unmodified	_LFLPRTDYSF_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.8272094726562	2	629.826963	1257.63937	0.26772	0.00016862	-0.11387	-7.1717E-05	0.15386	9.6903E-05	629.8268801406654	67.956	0.77235	68.034	67.77	68.543	0.078041					81	27	4	0	0	0	0.049822	1	17065	17065		59.052	26.267	1	1379700			22553	8471	12632	12633	28734	28734					0.020859701945255438
LFLPRTDYSF	10	Unmodified	_LFLPRTDYSF_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.8268432617188	2	629.826963	1257.63937	0.35578	0.00022408	-0.19721	-0.00012421	0.15857	9.9871E-05	629.8268324001124	68.101	0.98439	68.085	67.785	68.769	-0.016296					86	34	4	0	0	0	0.016475	2	17119	17074;17119		75.571	22.334	1	1502300			22554	8471	12632	12633	28735;28736	28736					0.020859701945255438
LFLQHAISV	9	Unmodified	_LFLQHAISV_					0	0	0		TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant;nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG	TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant	TG|p.H1429Tfs*20|1|0.3|ENSG00000042832|chr8:132913171-132913171|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2599487304688	2	514.300384	1026.58622	0.75688	0.00038927	-1.5268	-0.00078526	-0.76996	-0.00039599	514.3002834778083	37.385	0.43452	37.385	37.181	37.616	0					24	15	3	0	0	0	0.1854	1	7723	7723		32.305	1.6689	1	173030			22555	616	12633	12634	28737	28737					0.07398637202550162
LFLQLIAEF	9	Unmodified	_LFLQLIAEF_					0	0	0		ENST00000537064.5_1_12:133201285-133234573:-|nuORF;ENSG00000177084|ENST00000320574|POLE	ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENST00000537064.5_1_12:133201285-133234573:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.33203125	2	547.318243	1092.62193	0.52555	0.00028764	0.87873	0.00048095	1.4043	0.00076859	547.3187105290443	72.87	0.60184	72.924	72.707	73.309	0.053841					28	21	2	0	0	0	0.068501	1	18563	18563		46.021	4.0654	1	84682			22556	6960	12634	12635	28738	28738					0.0793267465955978
LFLRFFAPAI	10	Unmodified	_LFLRFFAPAI_					0	0	0		ENST00000418411.6_1_12:113540888-113573291:-|nuORF;nc|ENSG00000111344|O95294-2|RASAL1;nc|ENSG00000111344|O95294|RASAL1;ENSG00000111344|ENST00000548055|RASAL1;nc|ENSG00000111344|O95294-3|RASAL1;ENST00000546727.5_1_12:113545343-113557136:-|nuORF;ENST00000548972.5_1_12:113545343-113573291:-|nuORF	ENST00000418411.6_1_12:113540888-113573291:-|nuORF	ENST00000418411.6_1_12:113540888-113573291:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8567504882812	2	597.855327	1193.6961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.464	1	89.555	89.055	90.055	0.090569								0	0	0	0.37581	1	23669	23669		3.9444	0	1				22557	2363	12635	12636	28739	28739					0.10700062541741318
LFLSQLVFV	9	Unmodified	_LFLSQLVFV_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.320556640625	2	533.320786	1064.62702	0.54192	0.00028901	-1.5213	-0.00081137	-0.97943	-0.00052235	533.3199508177486	88.371	0.6432	88.368	88.108	88.752	-0.0028381					52	30	2	0	0	0	0.12642	1	23313	23313		34.402	0.29928	1	183850			22558	1042	12636	12637	28740	28740					0.09728978522161924
LFLYNHIIL	9	Unmodified	_LFLYNHIIL_					0	0	0			REV__ENSG00000124003|ENST00000446656|MOGAT1	REV__ENSG00000124003|ENST00000446656|MOGAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.3388671875	2	573.33951	1144.66447	0.3947	0.0002263	-1.0598	-0.00060763	-0.66511	-0.00038133	573.3386465364069	91.232	0.39087	91.233	91.009	91.4	0.00046539					55	24	3	0	0	0	0.34536	1	24254	24254		2.0598	0	1	581650	+		22559	15205	12637	12638	28741	28741					0.09792069787795299
LFMKELALF	9	Unmodified	_LFMKELALF_					0	0	0			REV__nc|ENSG00000165915|Q96H72-2|SLC39A13	REV__nc|ENSG00000165915|Q96H72-2|SLC39A13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2963256835938	2	556.314646	1110.61474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.74	1	101.74	101.24	102.24	-0.0054703								0	0	0	0.24311	1	27154	27154		8.5933	1.304	1		+		22560	17276	12638	12639	28742	28742					0.06385618787476233
LFMMFYLLK	9	Unmodified	_LFMMFYLLK_					0	0	0			REV__nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	REV__nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3265380859375	2	603.326699	1204.63885	0.37262	0.00022481	-0.27626	-0.00016668	0.09636	5.8137E-05	603.3263946123499	39.056	0.7884	39.149	38.76	39.548	0.09267					76	28	4	0	0	0	0.33276	1	8269	8269		3.9444	0.068064	1	1443400	+		22561	17597	12639	12640	28743	28743					0.04471135949484051
LFMPVPVP	8	Unmodified	_LFMPVPVP_					0	0	0			REV__nc|ENSG00000147130|Q14202-2|ZMYM3	REV__nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7101745605469	2	450.2566	898.498647	0.014341	6.4571E-06	-0.4702	-0.00021171	-0.45585	-0.00020525	450.2564924453956	22.643	0.67995	22.555	22.11	22.79	-0.087608					37	24	3	0	0	0	0.3439	1	3115	3115		2.8892	2.8892	1	66434	+		22562	16372	12640	12641	28744	28744					0.045337200074413886
LFNCFRIFL	9	Unmodified	_LFNCFRIFL_					0	0	0		ENST00000334256.8_1_3:160218487-160218565:-|nuORF	ENST00000334256.8_1_3:160218487-160218565:-|nuORF	ENST00000334256.8_1_3:160218487-160218565:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8338623046875	2	586.817887	1171.62122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.59	1	79.651	79.151	80.151	0.061417								0	0	0	0.24311	1	20635	20635		8.5933	1.304	1				22563	9463	12641	12642	28745	28745					0.0422755673885149
LFNCFRIFL	9	Unmodified	_LFNCFRIFL_					0	0	0		ENST00000334256.8_1_3:160218487-160218565:-|nuORF	ENST00000334256.8_1_3:160218487-160218565:-|nuORF	ENST00000334256.8_1_3:160218487-160218565:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8342895507812	2	586.817887	1171.62122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.448	1	81.424	80.924	81.924	-0.02404								0	0	0	0.23091	1	21198	21198		12.532	3.1841	1				22564	9463	12641	12642	28746	28746					0.0422755673885149
LFNELYFLAD	10	Unmodified	_LFNELYFLAD_					0	0	0		GBA2|p.W617*|1|0.2|ENSG00000070610|chr9:35738848-35738848|C/-|frameshift_variant;nc|ENSG00000070610|Q9HCG7-3|GBA2;nc|ENSG00000070610|Q9HCG7-2|GBA2;ENSG00000070610|ENST00000378103|GBA2	GBA2|p.W617*|1|0.2|ENSG00000070610|chr9:35738848-35738848|C/-|frameshift_variant	GBA2|p.W617*|1|0.2|ENSG00000070610|chr9:35738848-35738848|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3475952148438	2	622.813522	1243.61249	0.50799	0.00031639	-0.41687	-0.00025963	0.09112	5.6751E-05	622.8134676193522	85.751	0.46161	85.751	85.527	85.989	0					28	16	2	0	0	0	0.3144	1	22475	22475		13.042	4.8869	1	127960			22565	933	12642	12643	28747	28747					0.0004286158339255053
LFNKAAFFV	9	Unmodified	_LFNKAAFFV_					0	0	0			REV__ENST00000507507.1_1_10:63170082-63173364:-|nuORF	REV__ENST00000507507.1_1_10:63170082-63173364:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7988891601562	2	528.797478	1055.5804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.776	1	12.677	12.177	13.177	-0.099291								0	0	0	0.24522	1	229	229		7.9102	2.1783	1		+		22566	18697	12643	12644	28748	28748					0.05483538690896239
LFNKLTSGL	9	Unmodified	_LFNKLTSGL_					0	0	0			REV__ENST00000265339.6_1_5:133726790-133726904:+|nuORF	REV__ENST00000265339.6_1_5:133726790-133726904:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7923889160156	2	496.792392	991.570232	0.18294	9.0884E-05	-0.25671	-0.00012753	-0.073764	-3.6645E-05	496.79239333285676	15.77	0.42324	15.77	15.557	15.981	0					32	14	3	0	0	0	0.29638	1	1124	1124		9.3831	0	1	83146	+		22567	19650	12644	12645	28749	28749					0.07410930965647822
LFNLLLQALF	10	Unmodified	_LFNLLLQALF_					0	0	0		ENST00000397776.2_1_1:158424391-158424673:+|nuORF;nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24	ENST00000397776.2_1_1:158424391-158424673:+|nuORF	ENST00000397776.2_1_1:158424391-158424673:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.258544921875	2	596.360442	1190.70633	0.071041	4.2366E-05	0.13442	8.0163E-05	0.20546	0.00012253	596.3603688668036	65.148	0.6107	65.137	64.893	65.504	-0.011337					43	22	3	0	0	0	0.31847	1	16153	16153		6.7232	1.9672	1	384150			22568	4875	12645	12646	28750	28750					0.11860625476310815
LFNPNTNLYF	10	Unmodified	_LFNPNTNLYF_					0	0	0		ENST00000486074.2_1_10:60966594-61005348:+|nuORF;nc|ENSG00000165443|Q96FC7-2|PHYHIPL;ENSG00000165443|ENST00000373880|PHYHIPL	ENST00000486074.2_1_10:60966594-61005348:+|nuORF	ENST00000486074.2_1_10:60966594-61005348:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.8119506835938	2	621.811313	1241.60807	0.58317	0.00036262	0.3057	0.00019009	0.88887	0.00055271	621.811203482285	77.414	0.64545	77.414	77.204	77.85	0					46	23	3	0	0	0	0.02128	2	20008	19960;20008		70.332	45.341	1	307920			22569	5961	12646	12647	28751;28752	28752					-0.003066028395323883
LFNPNTNLYF	10	Unmodified	_LFNPNTNLYF_					0	0	0		ENST00000486074.2_1_10:60966594-61005348:+|nuORF;nc|ENSG00000165443|Q96FC7-2|PHYHIPL;ENSG00000165443|ENST00000373880|PHYHIPL	ENST00000486074.2_1_10:60966594-61005348:+|nuORF	ENST00000486074.2_1_10:60966594-61005348:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.8115234375	2	621.811313	1241.60807	0.36637	0.00022781	0.47893	0.0002978	0.8453	0.00052562	621.8112589914875	77.411	0.5853	77.466	77.18	77.766	0.05542					42	20	3	0	0	0	0.11865	1	19978	19978		43.982	24.725	1	339880			22570	5961	12646	12647	28753	28753					-0.003066028395323883
LFNPNTNLYF	10	Unmodified	_LFNPNTNLYF_					0	0	0		ENST00000486074.2_1_10:60966594-61005348:+|nuORF;nc|ENSG00000165443|Q96FC7-2|PHYHIPL;ENSG00000165443|ENST00000373880|PHYHIPL	ENST00000486074.2_1_10:60966594-61005348:+|nuORF	ENST00000486074.2_1_10:60966594-61005348:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.8116455078125	2	621.811313	1241.60807	0.61558	0.00038277	0.55586	0.00034564	1.1714	0.00072841	621.8112350083112	77.469	0.68376	77.438	77.213	77.897	-0.031334					51	24	3	0	0	0	0.13784	1	20016	20016		40.239	20.982	1	329920			22571	5961	12646	12647	28754	28754					-0.003066028395323883
LFNRNLKFLI	10	Unmodified	_LFNRNLKFLI_					0	0	0		ENST00000512068.1_1_4:3230383-3230554:+|nuORF	ENST00000512068.1_1_4:3230383-3230554:+|nuORF	ENST00000512068.1_1_4:3230383-3230554:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.904296875	3	426.595802	1276.76558	-0.33939	-0.00014478	0.67956	0.0002899	0.34017	0.00014511	426.59594573348835	45.875	0.33076	45.935	45.819	46.15	0.059834					19	11	2	0	0	0	0.31876	1	10258	10258		2.086	0	1	253280			22572	11391	12647	12648	28755	28755					0.13826521490523191
LFNRNLKFLI	10	Unmodified	_LFNRNLKFLI_					0	0	0		ENST00000512068.1_1_4:3230383-3230554:+|nuORF	ENST00000512068.1_1_4:3230383-3230554:+|nuORF	ENST00000512068.1_1_4:3230383-3230554:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	426.595802	1276.76558	0.059278	2.5288E-05	-0.27993	-0.00011942	-0.22065	-9.4129E-05	426.59602953304955	46.032	0.30246	46.097	45.925	46.227	0.065048	0.081288	-0.00081439	NaN	2.086	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123490			22573	11391	12647	12648							0.13826521490523191
LFNTTSNIF	9	Unmodified	_LFNTTSNIF_					0	0	0		nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2822875976562	2	528.771657	1055.52876	0.25918	0.00013705	-0.81647	-0.00043173	-0.55729	-0.00029468	528.771406799232	61.856	0.49087	61.848	61.7	62.191	-0.0085564					29	17	2	0	0	0	0.20626	1	15255	15255		22.736	0.28365	1	179130			22574	6449	12648	12649	28756	28756					0.00321750206330762
LFNTTSNIF	9	Unmodified	_LFNTTSNIF_					0	0	0		nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	528.771657	1055.52876	0.43529	0.00023017	-0.57382	-0.00030342	-0.13853	-7.3253E-05	528.7715445352787	61.942	0.51076	61.942	61.755	62.266	0	0.0062602	0.00014162	NaN	22.736	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156000			22575	6449	12648	12649							0.00321750206330762
LFNTTSNIF	9	Unmodified	_LFNTTSNIF_					0	0	0		nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	528.771657	1055.52876	0.082133	4.343E-05	-0.67447	-0.00035664	-0.59233	-0.00031321	528.7714583695257	61.921	0.71316	62.018	61.701	62.414	0.096985	0.081906	3.5187E-05	NaN	22.736	35	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162870			22576	6449	12648	12649							0.00321750206330762
LFNYLEGYY	9	Unmodified	_LFNYLEGYY_					0	0	0			REV__ENST00000413030.6_1_2:64478255-64478417:+|nuORF	REV__ENST00000413030.6_1_2:64478255-64478417:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.3500366210938	2	591.279315	1180.54408	0.50627	0.00029935	-1.9157	-0.0011327	-1.4094	-0.00083336	591.2779709787814	72.544	0.77998	72.515	72.066	72.846	-0.029305					48	27	3	0	0	0	0.20651	1	18493	18493		26.884	1.4843	1	518500	+		22577	20786	12649	12650	28757	28757					-0.03897382996478882
LFPEVKPTI	9	Unmodified	_LFPEVKPTI_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3291015625	2	522.310418	1042.60628	0.55677	0.0002908	3.4675	0.0018111	4.0243	0.0021019	522.3129208950403	89.336	0.63142	89.336	89.131	89.762	0					53	36	2	0	0	0	0.26612	1	23634	23634		13.906	2.7916	1	187510			22578	7339	12650	12651	28758	28758					0.08668388142518779
LFPEVKPTI	9	Unmodified	_LFPEVKPTI_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3282470703125	2	522.310418	1042.60628	0.52172	0.0002725	3.3415	0.0017453	3.8633	0.0020178	522.3128349524486	89.368	0.58615	89.368	89.051	89.637	-0.00081635					48	32	2	0	0	0	0.26612	1	23647	23647		13.906	2.7916	1	150260			22579	7339	12650	12651	28759	28759					0.08668388142518779
LFPGGLALTL	10	Unmodified	_LFPGGLALTL_					0	0	0			REV__nc|ENSG00000142233|Q8WTR8-2|NTN5	REV__nc|ENSG00000142233|Q8WTR8-2|NTN5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.29217529296875	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.559	1	74.559	74.059	75.059	0								0	0	0	0.30803	1	19112	19112		26.884	1.4843	1		+		22580	16111	12651	12652	28760	28760					0.09544405488077246
LFPGGLALTL	10	Unmodified	_LFPGGLALTL_					0	0	0			REV__nc|ENSG00000142233|Q8WTR8-2|NTN5	REV__nc|ENSG00000142233|Q8WTR8-2|NTN5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2928466796875	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.24	1	74.292	73.792	74.792	0.052361								0	0	0	0.30803	1	19007	19007		26.884	1.4843	1		+		22581	16111	12651	12652	28761	28761					0.09544405488077246
LFPGGLALTL	10	Unmodified	_LFPGGLALTL_					0	0	0			REV__nc|ENSG00000142233|Q8WTR8-2|NTN5	REV__nc|ENSG00000142233|Q8WTR8-2|NTN5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2908630371094	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.332	1	74.384	73.884	74.884	0.052361								0	0	0	0.33945	1	19035	19035		19.257	2.1441	1		+		22582	16111	12651	12652	28762	28762					0.09544405488077246
LFPGGLALTL	10	Unmodified	_LFPGGLALTL_					0	0	0			REV__nc|ENSG00000142233|Q8WTR8-2|NTN5	REV__nc|ENSG00000142233|Q8WTR8-2|NTN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2907409667969	2	501.305136	1000.59572	0.48456	0.00024291	-2.9423	-0.001475	-2.4577	-0.0012321	501.303905803584	74.547	0.22635	74.516	74.387	74.614	-0.030655					11	7	2	0	0	0	0.29519	1	19062	19062		15.847	5.0233	1	210120	+		22583	16111	12651	12652	28763	28763					0.09544405488077246
LFPLIRSFFV	10	Unmodified	_LFPLIRSFFV_					0	0	0			REV__ENST00000323977.7_1_11:94225978-94227031:-|nuORF	REV__ENST00000323977.7_1_11:94225978-94227031:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8693237304688	2	619.868434	1237.72232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.824	1	96.819	96.319	97.319	-0.0055466								0	0	0	0.37664	1	25903	25903		3.5965	0.31518	1		+		22584	19983	12652	12653	28764	28764					0.11296331713197105
LFPLLEEKYRQ	11	Unmodified	_LFPLLEEKYRQ_					0	0	0			REV__L1PA5_dup4732|chr6:122761880-122764546:+|3.017081909363208|0.0474676809604407|5.99|503.0|65|3|sense	REV__L1PA5_dup4732|chr6:122761880-122764546:+|3.017081909363208|0.0474676809604407|5.99|503.0|65|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.805419921875	3	479.269643	1434.7871	-1.429	-0.00068489	0.15824	7.5839E-05	-1.2708	-0.00060905	479.6037585220822	34.84	0.33032	34.915	34.713	35.043	0.075306					17	11	2	0	0	0	0.33303	1	6892	6892		2.4348	1.22	1	128150	+		22585	22813	12653	12654	28765	28765					0.08709861728539181
LFPLRRRQ	8	Unmodified	_LFPLRRRQ_					0	0	0		ENST00000409870.1_1_2:191045212-191045605:+|nuORF	ENST00000409870.1_1_2:191045212-191045605:+|nuORF	ENST00000409870.1_1_2:191045212-191045605:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.8263549804688	2	543.338167	1084.66178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.032	1	11.964	11.464	12.464	-0.06806								0	0	0	0.37992	1	5	5		0.79363	0	1				22586	10259	12654	12655	28766	28766					0.12283659173499473
LFPQEGKGN	9	Unmodified	_LFPQEGKGN_					0	0	0		ENST00000467597.1_1_1:1560241-1560445:+|nuORF	ENST00000467597.1_1_1:1560241-1560445:+|nuORF	ENST00000467597.1_1_1:1560241-1560445:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.25714111328125	2	495.256174	988.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.779	1	82.852	82.352	83.352	0.073097								0	0	0	0.21726	1	21617	21617		16.942	3.4344	1				22587	10825	12655	12656	28767	28767					0.0030859689210274155
LFPQKPLSL	9	Unmodified	_LFPQKPLSL_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2901611328125	2	521.81841	1041.62227	0.52484	0.00027387	-0.7365	-0.00038432	-0.21167	-0.00011045	521.8180756914302	63.53	1.0546	63.626	63.148	64.203	0.095722					49	37	2	0	0	0	0.2322	1	15739	15739		14.838	3.198	1	252060			22588	5381	12656	12657	28768	28768					0.10312094379423797
LFPQLSPIK	9	Unmodified	_LFPQLSPIK_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8184204101562	2	521.81841	1041.62227	0.40119	0.00020935	-0.65734	-0.00034301	-0.25615	-0.00013366	521.8178218095725	61.988	2.0863	61.988	61.254	63.34	0					226	77	5	0	0	0	0.16283	1	15383	15383		29.082	2.8134	1	1682200	+		22589	18751	12657	12658	28769	28769					0.1031209437940106
LFPQLSPIK	9	Unmodified	_LFPQLSPIK_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2665405273438	2	521.81841	1041.62227	0.40119	0.00020935	-0.65734	-0.00034301	-0.25615	-0.00013366	521.8178218095725	61.988	2.0863	61.988	61.254	63.34	0					226	77	5	0	0	0	0.22674	1	15313	15313		22.736	0	1	1682200	+		22590	18751	12657	12658	28770	28770					0.1031209437940106
LFPQLSPIK	9	Unmodified	_LFPQLSPIK_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.8182373046875	2	521.81841	1041.62227	0.14634	7.6361E-05	-0.25109	-0.00013102	-0.10475	-5.4662E-05	521.8179749517661	61.824	2.0093	61.921	61.14	63.149	0.096985					209	73	5	0	0	0	0.14786	1	15369	15369		31.268	0	1	1573100	+		22591	18751	12657	12658	28771	28771					0.1031209437940106
LFPQLSPIK	9	Unmodified	_LFPQLSPIK_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2664184570312	2	521.81841	1041.62227	0.14634	7.6361E-05	-0.25109	-0.00013102	-0.10475	-5.4662E-05	521.8179749517661	61.824	2.0093	61.921	61.14	63.149	0.096985					209	73	5	0	0	0	0.22674	1	15284	15284		22.736	0	1	1573100	+		22592	18751	12657	12658	28772	28772					0.1031209437940106
LFPQLSPIK	9	Unmodified	_LFPQLSPIK_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2666015625	2	521.81841	1041.62227	0.24303	0.00012682	-0.42184	-0.00022012	-0.17881	-9.3307E-05	521.8179227155684	61.851	2.1027	61.842	61.195	63.297	-0.0085564					226	77	5	0	0	0	0.22674	1	15303	15303		22.736	0	1	1670900	+		22593	18751	12657	12658	28773	28773					0.1031209437940106
LFPRRRTF	8	Unmodified	_LFPRRRTF_					0	0	0		ENSG00000174807|ENST00000311330|CD248	ENSG00000174807|ENST00000311330|CD248	ENSG00000174807|ENST00000311330|CD248	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8370361328125	2	546.824892	1091.63523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.497	1	72.551	72.051	73.051	0.054146								0	0	0	0.29147	1	18475	18475		30.225	1.1432	1				22594	6819	12658	12659	28774	28774					0.0930797028215693
LFPSAAQVTF	10	Unmodified	_LFPSAAQVTF_					0	0	0		nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3;ENSG00000115107|ENST00000393110|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7718505859375	2	540.78985	1079.56515	0.57831	0.00031275	-0.35152	-0.0001901	0.22679	0.00012264	540.7896874613833	72.854	0.72053	72.854	72.56	73.281	0					34	25	2	0	0	0	0.27655	1	18551	18551		24.882	5.6246	1	257410			22595	2607	12659	12660	28775	28775					0.028546271030108983
LFPSAAQVTF	10	Unmodified	_LFPSAAQVTF_					0	0	0		nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3;ENSG00000115107|ENST00000393110|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7716674804688	2	540.78985	1079.56515	0.51315	0.0002775	-0.21942	-0.00011866	0.29372	0.00015884	540.7896757915113	72.748	0.59822	72.802	72.601	73.2	0.053833					28	21	2	0	0	0	0.26354	1	18605	18605		24.882	5.5196	1	283000			22596	2607	12659	12660	28776	28776					0.028546271030108983
LFPSAAQVTF	10	Unmodified	_LFPSAAQVTF_					0	0	0		nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3;ENSG00000115107|ENST00000393110|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7715454101562	2	540.78985	1079.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.821	1	72.791	72.291	73.291	-0.029305								0	0	0	0.29689	1	18567	18567		28.234	0.60482	1				22597	2607	12659	12660	28777	28777					0.028546271030108983
LFPSCMWTF	9	Unmodified	_LFPSCMWTF_					0	0	0			REV__ENST00000502426.5_1_17:48736553-48755440:+|nuORF	REV__ENST00000502426.5_1_17:48736553-48755440:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.2528076171875	2	566.253731	1130.49291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.374	1	71.374	70.874	71.874	0								0	0	0	0.14428	1	18140	18140		36.044	1.9418	1		+		22598	14613	12660	12661	28778	28778					-0.06711746566543297
LFPSRDFIL	9	Unmodified	_LFPSRDFIL_					0	0	0			REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.313232421875	2	554.313492	1106.61243	0.38606	0.000214	-2.6589	-0.0014739	-2.2729	-0.0012599	554.3110666828997	90.232	0.63763	90.232	89.787	90.425	0					124	53	3	0	0	0	0.23007	2	23896	23896;23899		19.257	5.7491	1	121790	+		22599	13407	12661	12662	28779;28780	28779					0.0633890637402601
LFPSRDFIL	9	Unmodified	_LFPSRDFIL_					0	0	0			REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.8154907226562	2	554.313492	1106.61243	0.38249	0.00021202	-2.4798	-0.0013746	-2.0973	-0.0011626	554.3114047352706	90.083	0.60534	90.173	89.976	90.581	0.090668					90	47	3	0	0	0	0.23007	2	23889	23855;23889		19.257	5.3509	1	174770	+		22600	13407	12661	12662	28781;28782	28782					0.0633890637402601
LFPSRDFIL	9	Unmodified	_LFPSRDFIL_					0	0	0			REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3115234375	2	554.313492	1106.61243	0.3972	0.00022017	-2.6464	-0.0014669	-2.2492	-0.0012467	554.3114956030196	90.276	0.54434	90.277	90.032	90.576	0.00039673					77	39	3	0	0	0	0.23007	1	23879	23879		19.257	5.7491	1	135310	+		22601	13407	12661	12662	28783	28783					0.0633890637402601
LFPSYVALH	9	Unmodified	_LFPSYVALH_					0	0	0		ENSG00000158156|ENST00000373884|XKR8	ENSG00000158156|ENST00000373884|XKR8	ENSG00000158156|ENST00000373884|XKR8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3114013671875	2	523.78711	1045.55967	0.49352	0.0002585	1.1853	0.00062085	1.6788	0.00087935	523.7875460884578	32.639	0.18353	32.693	32.526	32.71	0.054371					10	6	2	0	0	0	0.25417	1	6217	6217		8.5933	0	1	68581			22602	5342	12662	12663	28784	28784					0.038709483112370435
LFPTSVRLL	9	Unmodified	_LFPTSVRLL_					0	0	0		ENST00000585159.5_1_18:70205290-70205344:-|nuORF	ENST00000585159.5_1_18:70205290-70205344:-|nuORF	ENST00000585159.5_1_18:70205290-70205344:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7572021484375	2	523.32386	1044.63317	0.52961	0.00027716	0.25188	0.00013181	0.78149	0.00040897	523.3238995140204	70.623	0.91788	70.598	70.185	71.103	-0.024872					68	32	3	0	0	0	0.25291	1	17769	17769		9.3474	0	1	701880			22603	12100	12663	12664	28785	28785					0.11263496753713298
LFPVKDASL	9	Unmodified	_LFPVKDASL_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7505187988281	2	495.286943	988.559333	0.56698	0.00028082	-0.35232	-0.0001745	0.21466	0.00010632	495.2867351342892	83.445	0.54491	83.429	83.267	83.812	-0.016823					36	22	2	0	0	0	0.25323	1	21774	21774		10.074	0	1	175180			22604	971	12664	12665	28786	28786					0.0645952859136969
LFQGRDRLVL	10	Unmodified	_LFQGRDRLVL_					0	0	0			REV__nc|ENSG00000105289|O95049-5|TJP3	REV__nc|ENSG00000105289|O95049-5|TJP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2315673828125	3	406.24354	1215.70879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.99	1	52.04	51.54	52.54	0.050575								0	0	0	0.36944	1	12173	12173		6.6304	0.43853	1		+		22605	14449	12665	12666	28787	28787					0.10956473933970301
LFQHYPSLS	9	Unmodified	_LFQHYPSLS_					0	0	0			REV__ENST00000370982.3_1_1:68170560-68170689:-|nuORF	REV__ENST00000370982.3_1_1:68170560-68170689:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.7142333984375	2	546.279649	1090.54475	0.54591	0.00029822	0.1458	7.9646E-05	0.69171	0.00037786	546.2797841785227	64.752	0.84786	64.752	64.342	65.19	0					34	30	2	0	0	0	0.24311	1	16187	16187		11.64	11.64	1	122970	+		22606	20393	12666	12667	28788	28788					0.003094564432331026
LFQLAFVQM	9	Unmodified	_LFQLAFVQM_					0	0	0			REV__ENST00000432031.6_1_2:179309204-179312244:-|nuORF	REV__ENST00000432031.6_1_2:179309204-179312244:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.8114013671875	2	548.79662	1095.57869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.629	1	64.629	64.129	65.129	0								0	0	0	0.21726	1	16076	16076		16.942	3.0362	1		+		22607	20955	12667	12668	28789	28789					0.03472161610625335
LFQLRALHLDH	11	Unmodified	_LFQLRALHLDH_					0	0	0		ENSG00000176020|ENST00000320431|AMIGO3	ENSG00000176020|ENST00000320431|AMIGO3	ENSG00000176020|ENST00000320431|AMIGO3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.917724609375	3	454.926211	1361.7568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.978	1	22.933	22.433	23.433	-0.044867								0	0	0	0.36449	1	3306	3306		5.0475	0.3316	1				22608	6897	12668	12669	28790	28790					0.09039547854035845
LFQQSKVNM	9	Unmodified	_LFQQSKVNM_					0	0	0		ENST00000532383.5_1_11:10821544-10823273:-|nuORF;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2	ENST00000532383.5_1_11:10821544-10823273:-|nuORF	ENST00000532383.5_1_11:10821544-10823273:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.274658203125	2	547.786784	1093.55902	0.60847	0.00033331	0.74437	0.00040776	1.3528	0.00074107	547.7871783479544	39.137	0.18777	39.237	39.184	39.372	0.099407					10	6	2	0	0	0	0.24289	1	8213	8213		18.146	1.2041	1	100010			22609	2303	12669	12670	28791	28791					0.015977855998698942
LFQVLEELC	9	Unmodified	_LFQVLEELC_					0	0	0			REV__ENST00000566735.1_1_16:19125342-19127388:+|nuORF	REV__ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.2744750976562	2	547.283543	1092.55253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.453	1	38.453	37.953	38.953	0								0	0	0	0.19804	1	8019	8019		23.148	0	1		+		22610	18999	12670	12671	28792	28792					0.009958476485053325
LFQWLSAKRA	10	Unmodified	_LFQWLSAKRA_					0	0	0			REV__ENSG00000144015|ENST00000272395|TRIM43	REV__ENSG00000144015|ENST00000272395|TRIM43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2628479003906	3	407.236385	1218.68733	0.032772	1.3346E-05	-0.33624	-0.00013693	-0.30347	-0.00012358	407.23630561044143	32.143	0.84199	32.184	31.748	32.59	0.040989					91	29	5	0	0	0	0.31899	1	6155	6155		7.4771	3.0709	1	450490	+		22611	16214	12671	12672	28793	28793					0.08673088905266013
LFRAMQLLKRK	11	Unmodified	_LFRAMQLLKRK_					0	0	0		ENST00000410111.7_1_2:86371938-86373232:-|nuORF	ENST00000410111.7_1_2:86371938-86373232:-|nuORF	ENST00000410111.7_1_2:86371938-86373232:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.62744140625	3	468.627108	1402.85949	0.25126	0.00011775	0.40742	0.00019093	0.65868	0.00030868	468.62737047076723	96.175	0.77148	96.171	95.933	96.705	-0.0038147					195	75	3	0	0	0	0.48212	1	25715	25715		0.45452	0.45452	1	489130			22612	10267	12672	12673	28794	28794					0.1741791732110869
LFRCGTGRPVV	11	Unmodified	_LFRCGTGRPVV_					0	0	0			REV__ENST00000502351.1_1_5:139492640-139492694:+|nuORF	REV__ENST00000502351.1_1_5:139492640-139492694:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.8342895507812	2	602.8346	1203.65465	0.20376	0.00012283	-0.34321	-0.0002069	-0.13945	-8.4064E-05	602.834399258383	96.762	0.38416	96.762	96.548	96.932	0					60	36	2	0	0	0	0.46819	1	25870	25870		2.2828	0	1	86336	+		22613	21716	12673	12674	28795	28795					0.06096558510739669
LFRCKNAVYI	10	Unmodified	_LFRCKNAVYI_					0	0	0			REV__ENSG00000166750|ENST00000299977|SLFN5	REV__ENSG00000166750|ENST00000299977|SLFN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.9119873046875	3	409.561993	1225.66415	-0.19389	-7.9411E-05	2.8564	0.0011699	2.6625	0.0010905	409.56330734124856	23.85	0.4914	23.85	23.593	24.085	0					26	16	2	0	0	0	0.3198	1	3623	3623		0.77653	0	1	48175	+		22614	17337	12674	12675	28796	28796					0.06034326796293499
LFRCKNAVYI	10	Unmodified	_LFRCKNAVYI_					0	0	0			REV__ENSG00000166750|ENST00000299977|SLFN5	REV__ENSG00000166750|ENST00000299977|SLFN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.91180419921875	3	409.561993	1225.66415	0.056099	2.2976E-05	1.8073	0.00074022	1.8634	0.00076319	409.562922687782	24.079	0.63088	24.006	23.756	24.387	-0.072559					27	20	2	0	0	0	0.31482	1	3719	3719		3.8763	2.9141	1	45818	+		22615	17337	12674	12675	28797	28797					0.06034326796293499
LFREEKELW	9	Unmodified	_LFREEKELW_					0	0	0			REV__nc|ENSG00000169398|Q05397-2|PTK2	REV__nc|ENSG00000169398|Q05397-2|PTK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.3327026367188	2	625.332413	1248.65027	0.37674	0.00023559	-0.73639	-0.00046049	-0.35964	-0.0002249	625.3322129753547	68.403	0.68755	68.403	68.124	68.812	0					50	25	3	0	0	0	0.20881	1	17235	17235		27.629	0	1	556850	+		22616	17514	12675	12676	28798	28798					0.035893725688538325
LFREEKELW	9	Unmodified	_LFREEKELW_					0	0	0			REV__nc|ENSG00000169398|Q05397-2|PTK2	REV__nc|ENSG00000169398|Q05397-2|PTK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.8432006835938	2	625.332413	1248.65027	-0.014295	-8.939E-06	0.181	0.00011319	0.16671	0.00010425	625.3324801024457	64.907	0.668	64.996	64.684	65.352	0.088882					35	24	2	0	0	0	0.2524	1	16232	16232		7.609	0	1	236720	+		22617	17514	12675	12676	28799	28799					0.035893725688538325
LFREEKELW	9	Unmodified	_LFREEKELW_					0	0	0			REV__nc|ENSG00000169398|Q05397-2|PTK2	REV__nc|ENSG00000169398|Q05397-2|PTK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.8095703125	2	625.332413	1248.65027	0.25664	0.00016049	-0.88665	-0.00055445	-0.63001	-0.00039397	625.3320500526123	68.456	0.56924	68.436	68.197	68.766	-0.01915					43	19	3	0	0	0	0.23235	1	17261	17261		21.537	7.9221	1	569440	+		22618	17514	12675	12676	28800	28800					0.035893725688538325
LFREGTMIQRL	11	Unmodified	_LFREGTMIQRL_					0	0	0			REV__ENSG00000182405|ENST00000397766|PGBD4	REV__ENSG00000182405|ENST00000397766|PGBD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.24871826171875	3	455.25534	1362.74419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.936	1	46.001	45.501	46.501	0.065048								0	0	0	0.3371	1	10299	10299		11.065	0.16632	1		+		22619	18196	12676	12677	28801	28801					0.07732768399478118
LFREISKLT	9	Unmodified	_LFREISKLT_					0	0	0			REV__KAT6A|p.E789Kfs*10|1|0.16|ENSG00000083168|chr8:41942831-41942864|CGTTTTCTCCTTCCTCAGCCTCCTCTTCTTCCTC/-|frameshift_variant	REV__KAT6A|p.E789Kfs*10|1|0.16|ENSG00000083168|chr8:41942831-41942864|CGTTTTCTCCTTCCTCAGCCTCCTCTTCTTCCTC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3323974609375	2	553.832049	1105.64954	0.17078	9.4581E-05	-0.593	-0.00032842	-0.42222	-0.00023384	553.8319005557321	42.042	1.2218	42.042	41.786	43.008	0					110	45	3	0	0	0	0.10059	1	9208	9208		38.176	3.7738	1	3943100	+		22620	13931	12677	12678	28802	28802					0.10094577919790026
LFRIMRNGTI	10	Unmodified	_LFRIMRNGTI_					0	0	0		ENSG00000109158|ENST00000264318|GABRA4	ENSG00000109158|ENST00000264318|GABRA4	ENSG00000109158|ENST00000264318|GABRA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.232421875	3	407.569259	1219.68595	-0.41043	-0.00016728	3.4837	0.0014198	3.0732	0.0012526	407.57071090519145	13.176	0.19581	13.176	13.058	13.254	0					10	6	2	0	0	0	0.31969	1	336	336		5.7834	1.2546	1	16460			22621	2240	12678	12679	28803	28803					0.08489131544865813
LFRKHKTISF	10	Unmodified	_LFRKHKTISF_					0	0	0		ENSG00000184140|ENST00000328882|OR4F6	ENSG00000184140|ENST00000328882|OR4F6	ENSG00000184140|ENST00000328882|OR4F6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2554626464844	3	426.255669	1275.74518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.023	1	55.023	54.523	55.523	0								0	0	0	0.3593	1	13108	13108		10.899	0	1				22622	7430	12679	12680	28804	28804					0.11833350830693234
LFRKIRFTK	9	Unmodified	_LFRKIRFTK_					0	0	0			REV__ENSG00000198918|ENST00000361575|RPL39	REV__ENSG00000198918|ENST00000361575|RPL39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.21478271484375	3	403.592392	1207.75535	-0.33919	-0.0001369	0.3441	0.00013888	0.0049089	1.9812E-06	403.59254831779555	34.248	0.58368	34.315	33.967	34.55	0.0667					43	20	3	0	0	0	0.259	1	6678	6678		2.7352	2.7352	1	117630	+		22623	18890	12680	12681	28805	28805					0.15977958555913574
LFRKLPEGRS	10	Unmodified	_LFRKLPEGRS_					0	0	0		ENST00000502508.5_1_5:33441192-33446243:+|nuORF	ENST00000502508.5_1_5:33441192-33446243:+|nuORF	ENST00000502508.5_1_5:33441192-33446243:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.853759765625	2	601.853847	1201.69314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.413	1	26.391	25.891	26.891	-0.022238								0	0	0	0.37157	1	4344	4344		5.7319	1.4026	1				22624	11275	12681	12682	28806	28806					0.10036187416926623
LFRMQPWL	8	Unmodified	_LFRMQPWL_					0	0	0		ENSG00000166278|ENST00000299367|C2;nc|ENSG00000166278|P06681-3|C2;nc|ENSG00000166278|P06681-2|C2	ENSG00000166278|ENST00000299367|C2	ENSG00000166278|ENST00000299367|C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.8309936523438	2	545.796955	1089.57936	0.55718	0.00030411	2.5377	0.0013851	3.0949	0.0016892	545.7979208156673	28.994	0.35131	28.994	28.817	29.169	0					21	12	2	0	0	0	0.34092	1	5120	5120		13.508	0	1	90140			22625	6056	12682	12683	28807	28807					0.03815001050338651
LFRQCTKN	8	Unmodified	_LFRQCTKN_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.27691650390625	2	505.266019	1008.51748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.319	1	73.373	72.873	73.873	0.053833								0	0	0	0.33122	1	18725	18725		23.148	6.2061	1				22626	2818	12683	12684	28808	28808					0.013566496312023446
LFRQESFF	8	Unmodified	_LFRQESFF_					0	0	0		nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD	nc|ENSG00000124299|P12955-2|PEPD	nc|ENSG00000124299|P12955-2|PEPD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.29541015625	2	537.274367	1072.53418	0.56864	0.00030552	0.044079	2.3682E-05	0.61272	0.0003292	537.2746599034709	63.332	0.51571	63.323	63.076	63.592	-0.0085526					41	18	3	0	0	0	0.43302	1	15648	15648		11.64	0	1	697080			22627	3151	12684	12685	28809	28809					0.0008147378880494216
LFRRAEALS	9	Unmodified	_LFRRAEALS_					0	0	0		ENST00000497070.1_1_3:184055391-184056524:+|nuORF	ENST00000497070.1_1_3:184055391-184056524:+|nuORF	ENST00000497070.1_1_3:184055391-184056524:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7752685546875	2	531.806365	1061.59818	0.079377	4.2213E-05	-0.72678	-0.0003865	-0.6474	-0.00034429	531.8063713253447	14.58	0.71799	14.475	14.105	14.823	-0.10466					45	24	5	0	0	0	0.26188	1	842	842		1.6526	0	1	157640			22628	11246	12685	12686	28810	28810					0.06984253945756791
LFRSFFLF	8	Unmodified	_LFRSFFLF_					0	0	0			REV__ENST00000463422.5_1_2:85981774-86000028:+|nuORF	REV__ENST00000463422.5_1_2:85981774-86000028:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7579345703125	2	538.80002	1075.58549	0.38936	0.00020979	-4.2775	-0.0023047	-3.8881	-0.0020949	538.7963267050242	92.998	0.12393	93.088	92.988	93.112	0.089195					13	10	2	0	0	0	0.34147	1	24726	24726		6.3541	0	1	56966	+		22629	21251	12686	12687	28811	28811					0.050718425535023925
LFRVQGLIA	9	Unmodified	_LFRVQGLIA_					0	0	0			REV__ENST00000476402.1_1_3:183685269-183689578:-|nuORF	REV__ENST00000476402.1_1_3:183685269-183689578:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.82879638671875	2	508.816202	1015.61785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.046	1	45.046	44.546	45.546	0								0	0	0	0.24077	1	10036	10036		9.3474	0	1		+		22630	21424	12687	12688	28812	28812					0.11066629956519591
LFRVQGLIA	9	Unmodified	_LFRVQGLIA_					0	0	0			REV__ENST00000476402.1_1_3:183685269-183689578:-|nuORF	REV__ENST00000476402.1_1_3:183685269-183689578:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8288269042969	2	508.816202	1015.61785	0.38415	0.00019546	1.0804	0.00054975	1.4646	0.00074521	509.31834474660945	44.815	0.35261	44.883	44.627	44.979	0.068569					16	12	2	0	0	0	0.29662	1	9973	9973		9.3474	0	1	123310	+		22631	21424	12687	12688	28813	28813					0.11066629956519591
LFRYVLDYL	9	Unmodified	_LFRYVLDYL_					0	0	0		ENSG00000183783|ENST00000360029|KCTD8	ENSG00000183783|ENST00000360029|KCTD8	ENSG00000183783|ENST00000360029|KCTD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.7861328125	2	601.334424	1200.6543	0.37477	0.00022536	-0.54595	-0.0003283	-0.17119	-0.00010294	601.3337381159382	63.064	0.46632	63.056	62.913	63.379	-0.0085526					26	16	2	0	0	0	0.25066	1	15571	15571		11.64	0.81637	1	189180			22632	7408	12688	12689	28814	28814					0.06199462062568273
LFSAQPQLADQ	11	Unmodified	_LFSAQPQLADQ_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.8240356445312	2	609.311677	1216.6088	0.45365	0.00027641	1.7679	0.0010772	2.2216	0.0013536	609.3131449655248	76.654	0.45789	76.623	76.346	76.804	-0.031487					30	16	3	0	0	0	0.32996	1	19677	19677		4.897	0	1	230640			22633	4132	12689	12690	28815	28815					0.009161918095287547
LFSCLKVLL	9	Unmodified	_LFSCLKVLL_					0	0	0			REV__ENST00000478088.1_1_16:76269257-76269449:-|nuORF	REV__ENST00000478088.1_1_16:76269257-76269449:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3171997070312	2	518.317189	1034.61982	0.40032	0.0002075	0.024215	1.2551E-05	0.42454	0.00022005	518.3171293624647	76.325	3.1646	76.325	75.369	78.533	0					457	116	5	0	0	0	0.32415	1	19742	19742		5.2307	0	1	8466300	+		22634	21445	12690	12691	28816	28816					0.10389922650119843
LFSFHLLF	8	Unmodified	_LFSFHLLF_					0	0	0		ENST00000371568.7_1_1:52870036-52870117:-|nuORF	ENST00000371568.7_1_1:52870036-52870117:-|nuORF	ENST00000371568.7_1_1:52870036-52870117:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.9853515625	2	512.286746	1022.55894	0.14295	7.3233E-05	0.3097	0.00015866	0.45265	0.00023189	512.7896370545524	94.755	0.22324	94.755	94.635	94.859	0					30	19	3	0	0	0	0.34319	1	25260	25260		2.5775	0	1	89293			22635	9824	12691	12692	28817	28817					0.04856153662194629
LFSFHLLF	8	Unmodified	_LFSFHLLF_					0	0	0		ENST00000371568.7_1_1:52870036-52870117:-|nuORF	ENST00000371568.7_1_1:52870036-52870117:-|nuORF	ENST00000371568.7_1_1:52870036-52870117:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.9854736328125	2	512.286746	1022.55894	0.34618	0.00017734	0.30609	0.00015681	0.65227	0.00033415	512.7892371300027	93.683	0.19038	93.682	93.663	93.853	-0.00051117					12	12	2	0	0	0	0.34185	1	25003	25003		2.5775	0	1	45659			22636	9824	12691	12692	28818	28818					0.04856153662194629
LFSFHLLF	8	Unmodified	_LFSFHLLF_					0	0	0		ENST00000371568.7_1_1:52870036-52870117:-|nuORF	ENST00000371568.7_1_1:52870036-52870117:-|nuORF	ENST00000371568.7_1_1:52870036-52870117:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	512.286746	1022.55894	0.21699	0.00011116	0.65826	0.00033722	0.87525	0.00044838	512.7893220054217	93.313	0.11998	93.313	93.27	93.39	0	-0.18451	0.00012783	NaN	2.5775	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59592			22637	9824	12691	12692							0.04856153662194629
LFSGGIDSMV	10	Unmodified	_LFSGGIDSMV_					0	0	0		ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7869873046875	2	513.252243	1024.48993	0.60755	0.00031183	-4.0474	-0.0020774	-3.4399	-0.0017655	513.2498835097198	58.386	0.5174	58.372	58.114	58.631	-0.014271					23	18	2	0	0	0	0.27772	1	14146	14146		26.884	7.6267	1	114840			22638	4144	12692	12693	28819	28819					-0.021332984196760663
LFSGGIDSMV	10	Unmodified	_LFSGGIDSMV_					0	0	0		ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.252243	1024.48993	0.41809	0.00021458	-3.6175	-0.0018567	-3.1994	-0.0016421	513.2502043895066	58.384	0.37103	58.384	58.128	58.5	0	0.019215	-4.3716E-05	NaN	26.884	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136270			22639	4144	12692	12693							-0.021332984196760663
LFSGGIDSMV	10	Unmodified	_LFSGGIDSMV_					0	0	0		ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	513.252243	1024.48993	0.29141	0.00014957	-3.0147	-0.0015473	-2.7233	-0.0013978	513.2505189981755	58.253	0.44348	58.338	58.162	58.606	0.085621	-0.026416	0.00057505	NaN	26.884	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129210			22640	4144	12692	12693							-0.021332984196760663
LFSHSLWSNTV	11	Unmodified	_LFSHSLWSNTV_					0	0	0		NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant;ENSG00000113971|ENST00000337331|NPHP3;nc|ENSG00000113971|Q7Z494-3|NPHP3;nc|ENSG00000113971|Q7Z494-6|NPHP3;ENST00000476742.1_1_3:132424565-132434018:-|nuORF;NPHP3|p.F560Lfs*14|1|0.14|ENSG00000113971|chr3:132700397-132700397|A/-|frameshift_variant	NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant	NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8877258300781	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.109	1	14.999	14.499	15.499	-0.10981								0	0	0	0.28435	1	930	930		14.171	1.3148	1				22641	2541	12693	12694	28820	28820					0.0072018456346540916
LFSIAQAKQFQ	11	Unmodified	_LFSIAQAKQFQ_					0	0	0			REV__IFNA14|p.V79F|1|0.23|ENSG00000228083|chr9:21239701-21239701|C/A|missense_variant	REV__IFNA14|p.V79F|1|0.23|ENSG00000228083|chr9:21239701-21239701|C/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8433227539062	2	640.853512	1279.69247	0.62013	0.00039741	1.0549	0.00067607	1.6751	0.0010735	640.854164233227	59.185	0.59677	59.17	58.86	59.456	-0.014267					47	20	4	0	0	0	0.30767	1	14422	14422		21.537	7.6309	1	482300	+		22642	22768	12694	12695	28821	28821					0.06381347977230689
LFSIFCRSHN	10	Unmodified	_LFSIFCRSHN_					0	0	0		ENST00000577837.1_3_17:65978332-65978401:+|nuORF	ENST00000577837.1_3_17:65978332-65978401:+|nuORF	ENST00000577837.1_3_17:65978332-65978401:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.20654296875	3	408.537847	1222.59171	-0.21229	-8.6728E-05	4.2796	0.0017484	4.0673	0.0016616	408.5397838306957	25.71	0.89247	25.71	25.296	26.189	0					54	30	3	0	0	0	0.31629	1	4159	4159		5.7834	0	1	317400			22643	12056	12695	12696	28822	28822					-0.0106800727726295
LFSILASPWV	10	Unmodified	_LFSILASPWV_					0	0	0			REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E	REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.8235473632812	2	566.823692	1131.63283	0.36963	0.00020952	-0.43459	-0.00024633	-0.064955	-3.6818E-05	566.8235160150839	51.469	0.62431	51.515	51.245	51.87	0.046574					42	22	2	0	0	0	0.25875	1	12004	12004		32.305	0	1	1710100	+		22644	23003	12696	12697	28823	28823					0.07228077033823865
LFSLDPIVDLF	11	Unmodified	_LFSLDPIVDLF_					0	0	0		ENST00000265138.3_1_5:90666548-90666647:-|nuORF	ENST00000265138.3_1_5:90666548-90666647:-|nuORF	ENST00000265138.3_1_5:90666548-90666647:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.90435791015625	3	426.90419	1277.69074	0.1322	5.6437E-05	0.64336	0.00027466	0.77556	0.00033109	426.9043467539318	45.737	1.2766	45.802	45.147	46.424	0.065048					111	46	4	0	0	0	0.39785	1	10257	10257		11.518	0.61892	1	1982500			22645	9038	12697	12698	28824	28824					0.06300294168590881
LFSLSQAQY	9	Unmodified	_LFSLSQAQY_					0	0	0		ENSG00000122176|ENST00000354955|FMOD	ENSG00000122176|ENST00000354955|FMOD	ENSG00000122176|ENST00000354955|FMOD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.7615966796875	2	528.771657	1055.52876	0.36034	0.00019054	0.20026	0.00010589	0.56061	0.00029643	528.7716794229382	42.719	0.82201	42.719	42.435	43.257	0					69	29	4	0	0	0	0.17787	1	9314	9314		26.884	10.735	1	1056100			22646	3031	12698	12699	28825	28825					0.00321750206330762
LFSLSQAQY	9	Unmodified	_LFSLSQAQY_					0	0	0		ENSG00000122176|ENST00000354955|FMOD	ENSG00000122176|ENST00000354955|FMOD	ENSG00000122176|ENST00000354955|FMOD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.76171875	2	528.771657	1055.52876	0.3695	0.00019538	-0.45107	-0.00023852	-0.08157	-4.3132E-05	528.7715729600878	42.382	0.91214	42.468	42.009	42.922	0.085201					60	32	3	0	0	0	0.12846	1	9194	9194		34.102	7.2188	1	1057900			22647	3031	12698	12699	28826	28826					0.00321750206330762
LFSLVVMLY	9	Unmodified	_LFSLVVMLY_					0	0	0		nc|ENSG00000170417|Q6ZP80-3|TMEM182;nc|ENSG00000170417|Q6ZP80-2|TMEM182;ENST00000484094.1_1_2:103414278-103431424:+|nuORF;ENST00000488134.5_1_2:103353421-103431424:+|nuORF;ENSG00000170417|ENST00000412401|TMEM182	nc|ENSG00000170417|Q6ZP80-3|TMEM182	nc|ENSG00000170417|Q6ZP80-3|TMEM182	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.80859375	2	542.809196	1083.60384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.025	1	80.999	80.499	81.499	-0.026825								0	0	0	0.24522	1	21070	21070		7.9102	2.1783	1				22648	6450	12699	12700	28827	28827					0.06538216413196096
LFSPGPKTI	9	Unmodified	_LFSPGPKTI_					0	0	0		nc|ENSG00000184619|Q6ZNG9|KRBA2	nc|ENSG00000184619|Q6ZNG9|KRBA2	nc|ENSG00000184619|Q6ZNG9|KRBA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2808837890625	2	480.28166	958.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.672	1	67.655	67.155	68.155	-0.016296								0	0	0	0.2362	1	16993	16993		10.824	0.75	1				22649	12877	12700	12701	28828	28828					0.0678354593695758
LFSPQNTL	8	Unmodified	_LFSPQNTL_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.7496032714844	2	460.247818	918.481082	-0.06836	-3.1463E-05	-0.38963	-0.00017933	-0.45799	-0.00021079	460.2473483348035	60.317	0.54384	60.412	60.18	60.724	0.095093					32	19	2	0	0	0	0.12267	1	14759	14759		56.541	0.36423	1	799730			22650	5650	12701	12702	28829	28829					0.01858096006139931
LFSRPSPLL	9	Unmodified	_LFSRPSPLL_					0	0	0		ENST00000324262.8_1_18:72188123-72188333:+|nuORF	ENST00000324262.8_1_18:72188123-72188333:+|nuORF	ENST00000324262.8_1_18:72188123-72188333:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2552490234375	2	515.30821	1028.60187	0.059867	3.085E-05	0.29037	0.00014963	0.35024	0.00018048	515.308317309048	65.358	0.64583	65.346	65.022	65.668	-0.011337					57	23	3	0	0	0	0.17242	1	16305	16305		36.127	6.2864	1	620760			22651	9400	12702	12703	28830	28830					0.08870923719609891
LFSRTTLIF	9	Unmodified	_LFSRTTLIF_					0	0	0			REV__ENST00000494484.1_1_7:44841004-44841067:+|nuORF	REV__ENST00000494484.1_1_7:44841004-44841067:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2935180664062	2	549.321317	1096.62808	0.68706	0.00037741	-1.1088	-0.00060911	-0.42178	-0.0002317	549.8219166671635	46.684	0.21735	46.737	46.629	46.846	0.052574					10	7	2	0	0	0	0.24739	1	10529	10529		13.508	0	1	212410	+		22652	21652	12703	12704	28831	28831					0.08363192891079052
LFSTRTIK	8	Unmodified	_LFSTRTIK_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2438659667969	2	483.292559	964.570566	-0.13863	-6.6998E-05	-2.3347	-0.0011284	-2.4734	-0.0011954	483.2914752574901	13.776	0.42312	13.671	13.538	13.961	-0.10466					21	14	2	0	0	0	0.344	1	527	527		2.5775	0	1	35232	+		22653	13306	12704	12705	28832	28832					0.08686350685502475
LFSVFSAGFSM	11	Unmodified	_LFSVFSAGFSM_					0	0	0			REV__ENST00000578150.1_1_18:21594913-21660647:+|nuORF	REV__ENST00000578150.1_1_18:21594913-21660647:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.7891845703125	2	596.788992	1191.56343	0.19887	0.00011868	0.17543	0.00010469	0.37429	0.00022337	596.7889843868919	38.522	0.69286	38.522	38.295	38.988	0					58	24	3	0	0	0	0.46277	1	8086	8086		2.9952	0	1	1235800	+		22654	17447	12705	12706	28833	28833					-0.024687499772198862
LFTCHEDC	8	Unmodified	_LFTCHEDC_					0	0	0		nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENSG00000116786|ENST00000375799|PLEKHM2	nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7972412109375	2	484.186045	966.357538	0.061894	2.9968E-05	-2.5784	-0.0012484	-2.5165	-0.0012184	484.1845553171882	76.644	0.35121	76.697	76.539	76.89	0.053413					14	12	2	0	0	0	0.34337	1	19730	19730		5.2307	1.2863	1	105780			22655	2751	12706	12707	28834	28834					-0.1269864642815719
LFTDGAAAQCL	11	Unmodified	_LFTDGAAAQCL_					0	0	0			REV__ENST00000526510.5_1_11:67166244-67166426:-|nuORF	REV__ENST00000526510.5_1_11:67166244-67166426:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.80078125	2	555.268424	1108.5223	0.74564	0.00041403	-2.1403	-0.0011884	-1.3946	-0.00077439	555.2671760479168	37.341	0.32504	37.341	37.152	37.477	0					19	11	2	0	0	0	0.329	1	7622	7622		5.7319	0	1	140540	+		22656	21961	12707	12708	28835	28835					-0.027625110167036837
LFTERPDSK	9	Unmodified	_LFTERPDSK_					0	0	0			REV__TULP1|p.R100S|1|0.35|ENSG00000112041|chr6:35511699-35511699|G/T|missense_variant	REV__TULP1|p.R100S|1|0.35|ENSG00000112041|chr6:35511699-35511699|G/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.2745971679688	2	546.787838	1091.56112	0.074226	4.0586E-05	-3.4778	-0.0019016	-3.4035	-0.001861	547.2854051459477	39.157	0.41465	39.157	38.958	39.373	0					25	14	3	0	0	0	0.25989	1	8267	8267		14.838	2.5976	1	148780	+		22657	23348	12708	12709	28836	28836					0.01900537609321873
LFTERPDSK	9	Unmodified	_LFTERPDSK_					0	0	0			REV__TULP1|p.R100S|1|0.35|ENSG00000112041|chr6:35511699-35511699|G/T|missense_variant	REV__TULP1|p.R100S|1|0.35|ENSG00000112041|chr6:35511699-35511699|G/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.2748413085938	2	546.787838	1091.56112	0.37171	0.00020325	-4.24	-0.0023184	-3.8683	-0.0021151	547.2860273413271	39.167	0.38839	39.26	39.027	39.416	0.09267					17	13	2	0	0	0	0.25989	1	8219	8219		14.838	2.3067	1	132510	+		22658	23348	12708	12709	28837	28837					0.01900537609321873
LFTFSHPV	8	Unmodified	_LFTFSHPV_					0	0	0		ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2530822753906	2	474.252903	946.491253	0.49202	0.00023334	-0.53422	-0.00025336	-0.042201	-2.0014E-05	474.25275452257637	78.387	2.11	78.387	77.632	79.742	0					138	82	3	0	0	0	0.38703	1	20247	20247		20.871	5.103	1	804700			22659	8400	12709	12710	28838	28838					0.015867037313796573
LFTFSHPV	8	Unmodified	_LFTFSHPV_					0	0	0		ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2530212402344	2	474.252903	946.491253	0.68926	0.00032688	-0.72674	-0.00034466	-0.037487	-1.7778E-05	474.2526498431098	78.404	1.0685	78.374	78.034	79.102	-0.030426					103	42	3	0	0	0	0.38703	1	20293	20293		20.871	1.4322	1	812270			22660	8400	12709	12710	28839	28839					0.015867037313796573
LFTHIRLAHGF	11	Unmodified	_LFTHIRLAHGF_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF;ENST00000471676.1_1_X:53657869-53658410:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2674560546875	3	437.915535	1310.72478	-0.14029	-6.1436E-05	-2.549	-0.0011162	-2.6893	-0.0011777	437.9143862923704	46.344	0.16776	46.398	46.298	46.466	0.054375					6	5	2	0	0	0	0.33296	1	10394	10394		0.40827	0	1	113320			22661	1286	12710	12711	28840	28840					0.08184180170883337
LFTHKGPVF	9	Unmodified	_LFTHKGPVF_					0	0	0			REV__ENSG00000173451|ENST00000308086|THAP2	REV__ENSG00000173451|ENST00000308086|THAP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3036499023438	2	523.295102	1044.57565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.707	1	80.681	80.181	81.181	-0.026825								0	0	0	0.24715	1	20972	20972		7.2892	0.56607	1		+		22662	17783	12711	12712	28841	28841					0.05514654548142062
LFTHTPPIYL	10	Unmodified	_LFTHTPPIYL_					0	0	0			REV__nc|ENSG00000162139|Q9UQ49|NEU3	REV__nc|ENSG00000162139|Q9UQ49|NEU3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.7854614257812	2	601.334424	1200.6543	0.48992	0.00029461	-0.31654	-0.00019034	0.17338	0.00010426	601.3338462738267	63.123	0.43438	63.123	62.93	63.364	0					23	15	2	0	0	0	0.28434	1	15585	15585		25.399	6.1423	1	201300	+		22663	16964	12712	12713	28842	28842					0.06199462062568273
LFTIRDRDI	9	Unmodified	_LFTIRDRDI_					0	0	0		ENSG00000171815|ENST00000306549|PCDHB1	ENSG00000171815|ENST00000306549|PCDHB1	ENSG00000171815|ENST00000306549|PCDHB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.8031616210938	2	574.824755	1147.63496	0.66062	0.00037974	-0.65267	-0.00037517	0.0079509	4.5704E-06	574.8242563138776	50.793	0.29594	50.84	50.741	51.037	0.046574					14	10	2	0	0	0	0.22596	1	11779	11779		21.747	6.9084	1	297300			22664	6580	12713	12714	28843	28843					0.0670450577167685
LFTPQRLRS	9	Unmodified	_LFTPQRLRS_					0	0	0			REV__ENSG00000188064|ENST00000339464|WNT7B	REV__ENSG00000188064|ENST00000339464|WNT7B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.327392578125	2	559.327465	1116.64038	0.49043	0.00027431	-0.458	-0.00025617	0.032428	1.8138E-05	559.3271832851913	21.462	0.67223	21.362	21.101	21.773	-0.10034					60	23	4	0	0	0	0.25989	1	2883	2883		14.838	0	1	395710	+		22665	18539	12714	12715	28844	28844					0.08672229354124283
LFTTFDEMI	9	Unmodified	_LFTTFDEMI_					0	0	0			REV__ENSG00000137628|ENST00000393743|DDX60	REV__ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.260009765625	2	558.767726	1115.5209	0.34691	0.00019384	0.26219	0.0001465	0.6091	0.00034035	558.7672702217681	49.698	0.56634	49.698	49.434	50.001	0					38	20	3	0	0	0	0.21303	1	11470	11470		21.747	1.293	1	443550	+		22666	15874	12715	12716	28845	28845					-0.032241451054687786
LFTTLMLPF	9	Unmodified	_LFTTLMLPF_					0	0	0		ENST00000484417.5_1_20:37597780-37597825:+|nuORF	ENST00000484417.5_1_20:37597780-37597825:+|nuORF	ENST00000484417.5_1_20:37597780-37597825:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7876586914062	2	541.801371	1081.58819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.867	1	89.867	89.367	90.367	0								0	0	0	0.24311	1	23798	23798		8.5933	2.2392	1				22667	11075	12716	12717	28846	28846					0.050659298961363675
LFTVERSL	8	Unmodified	_LFTVERSL_					0	0	0			REV__SYNM|p.I1188T|1|0.34|ENSG00000182253|chr15:99131923-99131923|T/C|missense_variant	REV__SYNM|p.I1188T|1|0.34|ENSG00000182253|chr15:99131923-99131923|T/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.29681396484375	2	482.776742	963.538931	0.36431	0.00017588	0.025513	1.2317E-05	0.38983	0.0001882	482.77667873293393	51.314	0.39917	51.314	51.108	51.508	0					33	14	3	0	0	0	0.31617	1	11913	11913		26.884	11.036	1	583010	+		22668	23318	12717	12718	28847	28847					0.05570357931560466
LFTVERSL	8	Unmodified	_LFTVERSL_					0	0	0			REV__SYNM|p.I1188T|1|0.34|ENSG00000182253|chr15:99131923-99131923|T/C|missense_variant	REV__SYNM|p.I1188T|1|0.34|ENSG00000182253|chr15:99131923-99131923|T/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.2958679199219	2	482.776742	963.538931	0.26763	0.0001292	0.054713	2.6414E-05	0.32234	0.00015562	482.77679449958595	51.294	0.40989	51.341	51.118	51.528	0.046574					29	15	2	0	0	0	0.31617	1	11908	11908		26.884	5.137	1	563900	+		22669	23318	12717	12718	28848	28848					0.05570357931560466
LFTVERSL	8	Unmodified	_LFTVERSL_					0	0	0			REV__SYNM|p.I1188T|1|0.34|ENSG00000182253|chr15:99131923-99131923|T/C|missense_variant	REV__SYNM|p.I1188T|1|0.34|ENSG00000182253|chr15:99131923-99131923|T/C|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	482.776742	963.538931	0.37451	0.0001808	0.20945	0.00010112	0.58395	0.00028192	482.7767849577102	51.321	0.44181	51.331	51.119	51.561	0.0095634	0.0020336	9.7099E-05	NaN	26.884	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514520	+		22670	23318	12717	12718							0.05570357931560466
LFTWKQRT	8	Unmodified	_LFTWKQRT_					0	0	0		ENSG00000181544|ENST00000650831|FANCB	ENSG00000181544|ENST00000650831|FANCB	ENSG00000181544|ENST00000650831|FANCB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7799682617188	2	540.303458	1078.59236	0.44047	0.00023799	-0.23993	-0.00012964	0.20053	0.00010835	540.3030806967037	17.457	0.47443	17.457	17.272	17.746	0					27	16	2	0	0	0	0.34414	1	1600	1600		2.0598	0.21551	1	41147			22671	7239	12718	12719	28849	28849					0.05621155434073444
LFVEVCFSI	9	Unmodified	_LFVEVCFSI_					0	0	0			REV__ENST00000539434.1_1_12:67663527-67686741:+|nuORF	REV__ENST00000539434.1_1_12:67663527-67686741:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.813720703125	2	528.775354	1055.53615	0.77212	0.00040828	-2.997	-0.0015847	-2.2249	-0.0011764	528.773750238372	83.888	0.67202	83.888	83.321	83.993	0					45	25	4	0	0	0	0.20651	1	21958	21958		26.884	2.2098	1	251020	+		22672	22106	12719	12720	28850	28850					0.010607664823965024
LFVEVCFSI	9	Unmodified	_LFVEVCFSI_					0	0	0			REV__ENST00000539434.1_1_12:67663527-67686741:+|nuORF	REV__ENST00000539434.1_1_12:67663527-67686741:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8137817382812	2	528.775354	1055.53615	0.59405	0.00031412	-2.8424	-0.001503	-2.2484	-0.0011889	528.7736913645123	83.729	0.62396	83.806	83.274	83.898	0.077095					35	24	2	0	0	0	0.20651	1	21916	21916		26.884	2.2098	1	194990	+		22673	22106	12719	12720	28851	28851					0.010607664823965024
LFVEVCFSI	9	Unmodified	_LFVEVCFSI_					0	0	0			REV__ENST00000539434.1_1_12:67663527-67686741:+|nuORF	REV__ENST00000539434.1_1_12:67663527-67686741:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.775354	1055.53615	0.69831	0.00036925	-2.9136	-0.0015406	-2.2153	-0.0011714	528.7738893326405	83.803	0.44552	83.786	83.509	83.955	-0.016823	-0.040567	-7.8701E-06	NaN	26.884	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206510	+		22674	22106	12719	12720							0.010607664823965024
LFVFILQT	8	Unmodified	_LFVFILQT_					0	0	0			REV__nc|ENSG00000131747|P11388-4|TOP2A;REV__ENST00000469702.5_1_2:114462911-114480749:-|nuORF	REV__nc|ENSG00000131747|P11388-4|TOP2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.803466796875	2	490.794404	979.574254	0.17755	8.7143E-05	-3.1243	-0.0015334	-2.9467	-0.0014462	490.7929190844895	22.798	0.26397	22.753	22.553	22.817	-0.044867					14	8	2	0	0	0	0.4397	1	3237	3237		9.3474	0	1	26016	+		22675	22987;21344	12720	12721	28852	28852					0.08365020459370953
LFVLYYLL	8	Unmodified	_LFVLYYLL_					0	0	0			REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.32861328125	2	522.312429	1042.61031	0.48554	0.0002536	-0.47633	-0.00024879	0.0092048	4.8078E-06	522.3125948093957	89.223	0.50249	89.314	89.073	89.576	0.090561					43	26	2	0	0	0	0.43455	1	23613	23613		11.114	0.29054	1	159910	+		22676	23062	12721	12722	28853	28853					0.09070477636237229
LFVPHAII	8	Unmodified	_LFVPHAII_					0	0	0			REV__ENST00000532234.5_1_11:86662820-86662991:+|nuORF	REV__ENST00000532234.5_1_11:86662820-86662991:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.76580810546875	2	455.281463	908.548374	0.077482	3.5276E-05	-0.43515	-0.00019812	-0.35767	-0.00016284	455.2815109646722	64.74	0.79789	64.731	64.523	65.321	-0.0095291					49	28	3	0	0	0	0.34147	1	16260	16260		11.114	0	1	193880	+		22677	22029	12722	12723	28854	28854					0.09044171007747082
LFVVFFLVHL	10	Unmodified	_LFVVFFLVHL_					0	0	0			REV__ENSG00000196578|ENST00000358642|OR5AC2	REV__ENSG00000196578|ENST00000358642|OR5AC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.5750427246094	3	411.917994	1232.73215	0.22071	9.0916E-05	1.2562	0.00051744	1.4769	0.00060835	412.2531458766386	65.806	0.21118	65.806	65.634	65.845	0					10	7	2	0	0	0	0.32122	1	16410	16410		0.77653	0	1	82648	+		22678	18664	12723	12724	28855	28855					0.12509519718628326
LFWKETDQW	9	Unmodified	_LFWKETDQW_					0	0	0		ENST00000514032.5_1_5:179150767-179151683:+|nuORF	ENST00000514032.5_1_5:179150767-179151683:+|nuORF	ENST00000514032.5_1_5:179150767-179151683:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.7705993652344	3	418.204751	1251.59242	-1.3452	-0.00056256	-0.16641	-6.9592E-05	-1.5116	-0.00063215	418.2033883925277	34.982	0.60522	34.982	34.697	35.302	0					61	21	4	0	0	0	0.25992	1	6892	6892		4.5289	0.33936	1	567710			22679	11408	12724	12725	28856	28856					-0.023308893565854305
LFYFYLFL	8	Unmodified	_LFYFYLFL_					0	0	0			REV__ENST00000367128.7_1_1:206154210-206154282:+|nuORF	REV__ENST00000367128.7_1_1:206154210-206154282:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3516845703125	2	563.304604	1124.59466	0.52352	0.0002949	-3.6014	-0.0020287	-3.0778	-0.0017338	563.3040788278715	85.542	1.2342	85.622	85.021	86.255	0.080887					77	46	3	0	0	0	0.29242	1	22498	22498		32.454	0	1	168030	+		22680	20306	12725	12726	28857	28857					0.03734191119178831
LFYHQSPCL	9	Unmodified	_LFYHQSPCL_					0	0	0			REV__ENST00000523369.1_1_5:169685131-169685191:-|nuORF	REV__ENST00000523369.1_1_5:169685131-169685191:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2682495117188	2	554.268227	1106.5219	0.23939	0.00013269	-0.12965	-7.1863E-05	0.10974	6.0824E-05	554.2682305792811	32.919	0.99108	32.973	32.603	33.594	0.054371					103	35	5	0	0	0	0.30166	1	6283	6283		8.5933	1.304	1	1227600	+		22681	21901	12726	12727	28858	28858					-0.027098859458874358
LFYKLSFLI	9	Unmodified	_LFYKLSFLI_					0	0	0			REV__ENST00000508157.3_1_5:70790975-70807035:+|nuORF	REV__ENST00000508157.3_1_5:70790975-70807035:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3260498046875	2	572.344261	1142.67397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.636	1	70.636	70.136	71.136	0								0	0	0	0.21009	1	17912	17912		19.257	1.122	1		+		22682	21769	12727	12728	28859	28859					0.10833838073335755
LFYLGPVYL	9	Unmodified	_LFYLGPVYL_					0	0	0		nc|ENSG00000158220|A0FGR9-2|ESYT3;ENST00000486831.5_1_3:138153640-138188991:+|nuORF;ENSG00000158220|ENST00000389567|ESYT3	nc|ENSG00000158220|A0FGR9-2|ESYT3	nc|ENSG00000158220|A0FGR9-2|ESYT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8076782226562	2	542.807511	1083.60047	0.93496	0.0005075	-0.0086134	-4.6754E-06	0.92634	0.00050283	542.8073887217688	78.34	3.3554	78.31	77.238	80.594	-0.030434					321	127	4	0	0	0	0.29662	2	20105	20105;20681		9.3474	5.2307	1	1617500			22683	5348	12728	12729	28860;28861	28860					0.06201289630848805
LFYLNKLRR	9	Unmodified	_LFYLNKLRR_					0	0	0			REV__ENSG00000086619|ENST00000354619|ERO1B	REV__ENSG00000086619|ENST00000354619|ERO1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.3748168945312	2	611.874582	1221.73461	-0.10621	-6.4985E-05	1.9923	0.001219	1.8861	0.001154	612.3764931231397	102.96	0.34158	102.96	102.64	102.98	0					61	47	2	0	0	0	0.26145	1	27365	27365		0.52476	0	1	622250	+		22684	13978	12729	12730	28862	28862					0.13261368176245014
LGAFSIACCL	10	Unmodified	_LGAFSIACCL_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-4|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-4|IGSF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8319091796875	2	499.245906	996.477259	0.42917	0.00021426	0.43364	0.00021649	0.86281	0.00043076	499.24582930859646	37.838	0.59882	37.929	37.638	38.237	0.090881					44	21	3	0	0	0	0.30079	1	7816	7816		14.838	5.4908	1	187870	+		22685	23024	12730	12731	28863	28863					-0.021120330836083667
LGAGFLGTTT	10	Unmodified	_LGAGFLGTTT_					0	0	0		ENSG00000102794|ENST00000377462|ACOD1	ENSG00000102794|ENST00000377462|ACOD1	ENSG00000102794|ENST00000377462|ACOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2392883300781	2	469.2531	936.491647	-0.11905	-5.5863E-05	-0.88897	-0.00041715	-1.008	-0.00047301	469.2525987458229	25.308	0.78876	25.252	24.888	25.677	-0.055931					58	27	3	0	0	0	0.36002	1	4075	4075		10.824	0	1	668390			22686	1783	12731	12732	28864	28864					0.0208607866057946
LGAGLGHRGR	10	Unmodified	_LGAGLGHRGR_					0	0	0			REV__nc|ENSG00000122741|Q5QP82-2|DCAF10	REV__nc|ENSG00000122741|Q5QP82-2|DCAF10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2716979980469	2	497.288674	992.562795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.722	1	14.722	14.222	15.222	0								0	0	0	0.3664	1	811	811		7.9102	0.62092	1		+		22687	15170	12732	12733	28865	28865					0.066216362086152
LGAGSLGVGP	10	Unmodified	_LGAGSLGVGP_					0	0	0		ENST00000278025.8_1_10:135168706-135168871:-|nuORF	ENST00000278025.8_1_10:135168706-135168871:-|nuORF	ENST00000278025.8_1_10:135168706-135168871:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2140808105469	2	414.23471	826.454868	0.1021	4.2294E-05	3.0311	0.0012556	3.1332	0.0012979	414.23440049504944	17.859	0.35413	17.742	17.631	17.985	-0.11739					22	11	3	0	0	0	0.31267	1	1760	1760		14.838	4.0143	1	21192			22688	9104	12733	12734	28866	28866					0.034698268346687655
LGAIGGNILK	10	Unmodified	_LGAIGGNILK_					0	0	0			REV__ENST00000532361.5_1_11:794242-795006:-|nuORF	REV__ENST00000532361.5_1_11:794242-795006:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.8106384277344	2	478.300384	954.586216	0.38373	0.00018354	-0.22516	-0.00010769	0.15857	7.5845E-05	478.30028507007836	44.676	0.49464	44.745	44.54	45.034	0.068569					28	17	2	0	0	0	0.2593	1	9958	9958		25.399	4.9457	1	349290	+		22689	17996	12734	12735	28867	28867					0.10710637202566886
LGAKQIASI	9	Unmodified	_LGAKQIASI_					0	0	0			REV__ENST00000487440.5_1_3:47281337-47324087:-|nuORF	REV__ENST00000487440.5_1_3:47281337-47324087:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.88861083984375	2	450.779285	899.544017	0.16235	7.3186E-05	-0.43625	-0.00019665	-0.2739	-0.00012347	450.77909256929496	43.633	0.51839	43.633	43.441	43.959	0					23	18	2	0	0	0	0.23784	1	9637	9637		19.257	0	1	173040	+		22690	14009	12735	12736	28868	28868					0.09022661794165288
LGAKQRLHATL	11	Unmodified	_LGAKQRLHATL_					0	0	0			REV__ENST00000498542.5_1_22:24105328-24106389:+|nuORF	REV__ENST00000498542.5_1_22:24105328-24106389:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.247314453125	3	403.247173	1206.71969	-0.25829	-0.00010416	0.1961	7.9077E-05	-0.062193	-2.5079E-05	403.247221122834	33.267	0.85778	33.33	33.077	33.935	0.062916					80	30	3	0	0	0	0.32843	1	6434	6434		2.8433	0	1	1377800	+		22691	17511	12736	12737	28869	28869					0.12459876308275852
LGALFWVL	8	Unmodified	_LGALFWVL_					0	0	0			REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF	REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.77587890625	2	459.776014	917.537475	-0.17473	-8.0338E-05	-1.0177	-0.0004679	-1.1924	-0.00054823	459.7762587376676	14.682	1.9623	14.578	14.238	16.201	-0.10466					148	67	5	0	0	0	0.35781	1	959	959		24.21	0	1	11041000	+		22692	21062	12737	12738	28870	28870					0.07540768633475636
LGALFWVL	8	Unmodified	_LGALFWVL_					0	0	0			REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF	REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7757873535156	2	459.776014	917.537475	-0.14574	-6.7008E-05	-1.0733	-0.00049346	-1.219	-0.00056047	459.776274328062	14.713	1.8813	14.647	14.32	16.202	-0.066068					146	65	5	0	0	0	0.35781	1	979	979		24.21	0	1	11742000	+		22693	21062	12737	12738	28871	28871					0.07540768633475636
LGALPLPAAL	10	Unmodified	_LGALPLPAAL_					0	0	0			REV__ENST00000474359.6_1_12:58013521-58016599:+|nuORF	REV__ENST00000474359.6_1_12:58013521-58016599:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.3006286621094	2	468.299853	934.585153	0.2833	0.00013267	0.047135	2.2073E-05	0.33043	0.00015474	468.29985865095296	84.268	0.5949	84.268	83.932	84.527	0					40	23	2	0	0	0	0.26524	2	22045	22045;22095		24.674	0	1	324010	+		22694	21394	12738	12739	28872;28873	28872					0.11524422833656445
LGALPLPAAL	10	Unmodified	_LGALPLPAAL_					0	0	0			REV__ENST00000474359.6_1_12:58013521-58016599:+|nuORF	REV__ENST00000474359.6_1_12:58013521-58016599:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2996826171875	2	468.299853	934.585153	0.29648	0.00013884	0.15346	7.1863E-05	0.44993	0.0002107	468.29996343983333	84.167	0.57207	84.244	83.925	84.497	0.077095					40	22	2	0	0	0	0.20432	2	22034	22034;22083		32.117	0	1	310600	+		22695	21394	12738	12739	28874;28875	28874					0.11524422833656445
LGALPLPAAL	10	Unmodified	_LGALPLPAAL_					0	0	0			REV__ENST00000474359.6_1_12:58013521-58016599:+|nuORF	REV__ENST00000474359.6_1_12:58013521-58016599:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.3003234863281	2	468.299853	934.585153	0.41891	0.00019618	-0.010305	-4.8258E-06	0.40861	0.00019135	468.29983931098553	84.183	0.5327	84.166	83.998	84.531	-0.016823					40	22	2	0	0	0	0.20432	2	22018	22018;22067		32.117	0	1	404310	+		22696	21394	12738	12739	28876;28877	28876					0.11524422833656445
LGALPLPAAL	10	Unmodified	_LGALPLPAAL_					0	0	0			REV__ENST00000474359.6_1_12:58013521-58016599:+|nuORF	REV__ENST00000474359.6_1_12:58013521-58016599:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	468.299853	934.585153	0.2833	0.00013267	0.047135	2.2073E-05	0.33043	0.00015474	468.29985865095296	84.268	0.5949	84.268	83.932	84.527	0	0.041912	-5.6607E-06	NaN	32.117	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324010	+		22697	21394	12738	12739							0.11524422833656445
LGALPLPAAL	10	Unmodified	_LGALPLPAAL_					0	0	0			REV__ENST00000474359.6_1_12:58013521-58016599:+|nuORF	REV__ENST00000474359.6_1_12:58013521-58016599:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	468.299853	934.585153	0.29648	0.00013884	0.15346	7.1863E-05	0.44993	0.0002107	468.29996343983333	84.167	0.57207	84.244	83.925	84.497	0.077095	0.017736	9.3919E-05	NaN	32.117	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310600	+		22698	21394	12738	12739							0.11524422833656445
LGALPLPAAL	10	Unmodified	_LGALPLPAAL_					0	0	0			REV__ENST00000474359.6_1_12:58013521-58016599:+|nuORF	REV__ENST00000474359.6_1_12:58013521-58016599:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	468.299853	934.585153	0.41891	0.00019618	-0.010305	-4.8258E-06	0.40861	0.00019135	468.29983931098553	84.183	0.5327	84.166	83.998	84.531	-0.016823	-0.059648	-5.9459E-05	NaN	32.117	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	404310	+		22699	21394	12738	12739							0.11524422833656445
LGAPGPLTDP	10	Unmodified	_LGAPGPLTDP_					0	0	0			REV__ENSG00000146904|ENST00000275815|EPHA1	REV__ENSG00000146904|ENST00000275815|EPHA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.23931884765625	2	469.2531	936.491647	-0.038648	-1.8136E-05	-0.89374	-0.00041939	-0.93239	-0.00043753	469.2525995552556	25.265	0.7805	25.265	24.843	25.623	0					59	26	4	0	0	0	0.3641	1	4062	4062		10.074	2.7847	1	663820	+		22700	16362	12739	12740	28878	28878					0.020860786605567228
LGAPQYAVI	9	Unmodified	_LGAPQYAVI_					0	0	0			REV__nc|ENSG00000065923|Q96T83|SLC9A7	REV__nc|ENSG00000065923|Q96T83|SLC9A7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2641906738281	2	466.26601	930.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.265	1	81.334	80.834	81.834	0.068993								0	0	0	0.24311	1	21151	21151		8.5933	0	1		+		22701	13672	12740	12741	28879	28879					0.04942972902836118
LGAPRAGSGAH	11	Unmodified	_LGAPRAGSGAH_					0	0	0		ENSG00000006016|ENST00000392386|CRLF1	ENSG00000006016|ENST00000392386|CRLF1	ENSG00000006016|ENST00000392386|CRLF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2716979980469	2	497.264865	992.515176	0.097088	4.8279E-05	-2.9955	-0.0014896	-2.8984	-0.0014413	497.2632671610748	14.922	0.42682	14.922	14.701	15.127	0					21	14	2	0	0	0	0.26547	1	811	811		34.402	2.0962	1	60370			22702	349	12741	12742	28880	28880					0.01861937217756804
LGAPWGALL	9	Unmodified	_LGAPWGALL_					0	0	0		ENST00000381031.7_1_22:46689034-46689478:+|nuORF	ENST00000381031.7_1_22:46689034-46689478:+|nuORF	ENST00000381031.7_1_22:46689034-46689478:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.263427734375	2	449.263271	896.511988	0.23044	0.00010353	0.20918	9.3975E-05	0.43962	0.0001975	449.2631544727254	58.739	0.59336	58.83	58.645	59.238	0.091301					47	20	3	0	0	0	0.11229	1	14270	14270		36.466	4.0125	1	473600			22703	9989	12742	12743	28881	28881					0.05959294111039526
LGAQGGRAPF	10	Unmodified	_LGAQGGRAPF_					0	0	0			REV__ENST00000509395.1_1_5:180480083-180480502:+|nuORF	REV__ENST00000509395.1_1_5:180480083-180480502:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7792053222656	2	487.264333	972.514114	0.36936	0.00017998	3.975	0.0019369	4.3444	0.0021169	487.26628227349835	50.137	0.11389	50.137	50.077	50.191	0					5	3	2	0	0	0	0.31358	1	11606	11606		9.3831	0	1	34867	+		22704	21789	12743	12744	28882	28882					0.026757228488463625
LGARQPPP	8	Unmodified	_LGARQPPP_					0	0	0			REV__ENST00000497693.1_1_9:37430482-37431094:+|nuORF	REV__ENST00000497693.1_1_9:37430482-37431094:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.57830810546875	2	418.24287	834.471186	-0.27241	-0.00011393	-0.88635	-0.00037071	-1.1588	-0.00048464	418.24222578781837	23.06	0.6278	23.06	22.763	23.39	0					35	21	2	0	0	0	0.33245	1	3408	3408		8.5933	0	1	144450	+		22705	20510	12744	12745	28883	28883					0.04732952791414391
LGARQPPP	8	Unmodified	_LGARQPPP_					0	0	0			REV__ENST00000497693.1_1_9:37430482-37431094:+|nuORF	REV__ENST00000497693.1_1_9:37430482-37431094:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	418.24287	834.471186	0.057864	2.4201E-05	-0.4556	-0.00019055	-0.39774	-0.00016635	418.2424995539126	23.149	1.0109	23.104	22.347	23.358	-0.044867	0.038851	9.9655E-05	NaN	8.5933	52	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131700	+		22706	20510	12744	12745							0.04732952791414391
LGASAGPPR	9	Unmodified	_LGASAGPPR_					0	0	0			REV__nc|ENSG00000141258|O43147-5|SGSM2	REV__nc|ENSG00000141258|O43147-5|SGSM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.266357421875	2	413.232502	824.450451	0.056392	2.3303E-05	0.86008	0.00035541	0.91647	0.00037872	413.23303390701426	16.712	0.36523	16.598	16.33	16.695	-0.11434					19	12	3	0	0	0	0.23784	1	1401	1401		19.257	0	1	51617	+		22707	16068	12745	12746	28884	28884					0.031203624117551954
LGASAGPPR	9	Unmodified	_LGASAGPPR_					0	0	0			REV__nc|ENSG00000141258|O43147-5|SGSM2	REV__nc|ENSG00000141258|O43147-5|SGSM2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	413.232502	824.450451	-0.13386	-5.5315E-05	0.89832	0.00037122	0.76446	0.0003159	413.2329045222234	16.666	0.50704	16.666	16.242	16.749	0	0.03422	1.5145E-05	NaN	19.257	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40428	+		22708	16068	12745	12746							0.031203624117551954
LGASHGAGPL	10	Unmodified	_LGASHGAGPL_					0	0	0		ENST00000241502.8_1_3:197476625-197476913:+|nuORF	ENST00000241502.8_1_3:197476625-197476913:+|nuORF	ENST00000241502.8_1_3:197476625-197476913:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.8851013183594	2	440.237784	878.461016	-0.13651	-6.0096E-05	-0.11275	-4.9638E-05	-0.24926	-0.00010973	440.23777552880483	28.563	0.56039	28.563	28.215	28.776	0.0004673					21	19	2	0	0	0	0.31051	1	5009	5009		16.942	6.7589	1	109890			22709	8886	12746	12747	28885	28885					0.016923450661806783
LGASLYLLCLQ	11	Unmodified	_LGASLYLLCLQ_					0	0	0			REV__nc|ENSG00000091409|P23229-4|ITGA6	REV__nc|ENSG00000091409|P23229-4|ITGA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3335571289062	2	597.333567	1192.65258	0.13419	8.0159E-05	-0.47189	-0.00028187	-0.33769	-0.00020171	597.3333251999863	60.172	1.1797	60.172	59.728	60.908	0					127	38	5	0	0	0	0.069534	2	14682	14682;14781		47.594	14.149	1	15557000	+		22710	14063	12747	12748	28886;28887	28886					0.0639608498229336
LGAVSPAVV	9	Unmodified	_LGAVSPAVV_					0	0	0		nc|ENSG00000164038|Q86UD5-2|SLC9B2;nc|ENSG00000164037|Q4ZJI4-3|SLC9B1;ENSG00000164037|ENST00000296422|SLC9B1;ENSG00000164038|ENST00000394785|SLC9B2	nc|ENSG00000164038|Q86UD5-2|SLC9B2	nc|ENSG00000164038|Q86UD5-2|SLC9B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.78515625	2	406.747453	811.480354	0.054106	2.2008E-05	0.23702	9.6407E-05	0.29112	0.00011841	406.74741360696277	26.398	0.90098	26.376	26.073	26.974	-0.022238					66	31	3	0	0	0	0.072564	1	4315	4315		60.39	20.44	1	685750			22711	5771	12748	12749	28888	28888					0.06707301357084816
LGAVVQII	8	Unmodified	_LGAVVQII_					0	0	0		nc|ENSG00000182013|Q86V59-2|PNMA8A;ENSG00000182013|ENST00000313683|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	nc|ENSG00000182013|Q86V59-2|PNMA8A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.58367919921875	2	406.765646	811.516739	-0.15775	-6.4165E-05	0.071109	2.8925E-05	-0.086636	-3.5241E-05	406.76572071329565	42.803	0.59715	42.803	42.465	43.062	0					34	21	2	0	0	0	0.34147	1	9261	9261		6.3541	0	1	267880			22712	7264	12749	12750	28889	28889					0.10344178253808423
LGAWLQVGI	9	Unmodified	_LGAWLQVGI_					0	0	0			REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.792724609375	2	478.781828	955.549102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.032	1	43.117	42.617	43.617	0.085197								0	0	0	0.19804	1	9415	9415		23.148	0.41214	1		+		22713	14184	12750	12751	28890	28890					0.06954965656814238
LGCLPFWI	8	Unmodified	_LGCLPFWI_					0	0	0			REV__ENST00000369774.8_3_10:105360489-105360906:-|nuORF	REV__ENST00000369774.8_3_10:105360489-105360906:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7720947265625	2	474.754224	947.493896	-0.055197	-2.6205E-05	-1.0016	-0.00047551	-1.0568	-0.00050171	474.75368259579346	15.922	0.69756	15.922	15.679	16.377	0					48	24	3	0	0	0	0.33618	1	1176	1176		17.087	0	1	141920	+		22714	20362	12751	12752	28891	28891					0.018048358646751694
LGCTFETHH	9	Unmodified	_LGCTFETHH_					0	0	0			REV__ENSG00000112357|ENST00000318471|PEX7	REV__ENSG00000112357|ENST00000318471|PEX7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7328491210938	2	522.732009	1043.44946	0.67917	0.00035503	0.12801	6.6917E-05	0.80719	0.00042194	522.7320471980667	85.168	0.74158	85.168	84.895	85.637	0					57	28	3	0	0	0	0.32733	1	22463	22463		4.756	4.756	1	393430	+		22715	14773	12752	12753	28892	28892					-0.0705222001945458
LGCVSFKLS	9	Unmodified	_LGCVSFKLS_					0	0	0			REV__ENST00000339839.9_1_12:94806364-94853386:-|nuORF	REV__ENST00000339839.9_1_12:94806364-94853386:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.3106384277344	2	477.259871	952.505189	0.25282	0.00012066	-2.5376	-0.0012111	-2.2848	-0.0010904	477.2582694546917	63.153	1.8341	63.144	61.757	63.592	-0.0085526					108	67	3	0	0	0	0.24311	1	15486	15486		16.942	1.1741	1	971340	+		22716	20103	12753	12754	28893	28893					0.027036131681597908
LGDHLARR	8	Unmodified	_LGDHLARR_					0	0	0		ENSG00000150990|ENST00000308736|DHX37;ENST00000542400.5_1_12:125435197-125437195:-|nuORF	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2699279785156	2	469.26995	936.525347	-0.072317	-3.3936E-05	0.28311	0.00013286	0.21079	9.8919E-05	469.2700419337075	16.417	0.53627	16.417	16.123	16.659	0					44	18	3	0	0	0	0.4419	1	1342	1342		8.5933	1.8701	1	115460			22717	4930	12754	12755	28894	28894					0.0545454494298383
LGDIQPTGPLL	11	Unmodified	_LGDIQPTGPLL_					0	0	0			REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5	REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3218994140625	2	562.321514	1122.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.52	1	96.514	96.014	97.014	-0.0055466								0	0	0	0.36137	1	25813	25813		5.7319	0	1		+		22718	13185	12755	12756	28895	28895					0.07206567820298915
LGDQLKGAI	9	Unmodified	_LGDQLKGAI_					0	0	0			REV__ENSG00000102265|ENST00000218388|TIMP1	REV__ENSG00000102265|ENST00000218388|TIMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.25872802734375	2	457.768917	913.523281	0.59285	0.00027139	-0.97974	-0.00044849	-0.38689	-0.0001771	457.76858282214977	36.422	0.40007	36.508	36.333	36.733	0.08625					21	13	2	0	0	0	0.25417	1	7353	7353		4.756	0	1	294620	+		22719	14315	12756	12757	28896	28896					0.06306071414508096
LGDRALVP	8	Unmodified	_LGDRALVP_					0	0	0		ENSG00000197386|ENST00000355072|HTT;ENST00000510626.5_1_4:3131970-3189635:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2349853515625	2	420.750527	839.486502	-0.058158	-2.447E-05	-1.1299	-0.00047539	-1.188	-0.00049986	420.750054420377	49.39	0.45176	49.422	49.096	49.548	0.032043					19	15	2	0	0	0	0.34039	1	11325	11325		15.847	0	1	121740			22720	7959	12757	12758	28897	28897					0.06033819588594724
LGDRIAIIS	9	Unmodified	_LGDRIAIIS_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;ENST00000487109.5_1_9:139906084-139911410:-|nuORF	ENSG00000165029|ENST00000374736|ABCA1;nc|ENSG00000107331|Q9BZC7|ABCA2	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.77764892578125	2	479.290017	956.565481	0.41878	0.00020072	0.66492	0.00031869	1.0837	0.00051941	479.29001919603667	45.55	0.56956	45.615	45.33	45.9	0.065048					58	20	4	0	0	0	0.14076	1	10239	10239		32.305	3.8186	1	1317500			22721	5917;2121	12758	12759	28898	28898					0.0854604682289164
LGDWKDIK	8	Unmodified	_LGDWKDIK_					0	0	0			REV__ENST00000561636.2_1_15:43423309-43423531:+|nuORF	REV__ENST00000561636.2_1_15:43423309-43423531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7688903808594	2	487.768917	973.523281	-0.72024	-0.00035131	-0.016934	-8.2599E-06	-0.73718	-0.00035957	487.76908232038085	35.055	0.58064	35.132	34.837	35.418	0.077377					40	20	3	0	0	0	0.42077	1	6985	6985		15.847	1.0089	1	272640	+		22722	22308	12759	12760	28899	28899					0.03546071414518792
LGEELYRLQF	10	Unmodified	_LGEELYRLQF_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.54718017578125	3	423.227556	1266.66084	-0.37607	-0.00015916	4.1505	0.0017566	3.7744	0.0015974	423.22890925360326	39.681	0.13261	39.681	39.644	39.777	0					6	4	2	0	0	0	0.31942	1	8408	8408		3.5871	0	1	113190			22723	6576	12760	12761	28900	28900					0.038173552232592556
LGEGRPPLP	9	Unmodified	_LGEGRPPLP_					0	0	0		L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|5|1|sense;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|4|1|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|5|1|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|5|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.269287109375	2	468.269084	934.523616	-0.33493	-0.00015684	-3.2464	-0.0015202	-3.5813	-0.001677	468.26911898836795	35.41	0.78125	35.487	35.141	35.922	0.077377					48	27	3	0	0	0	0.18803	1	7084	7084		25.399	0	1	291680			22724	12436	12761	12762	28901	28901					0.053734911343553904
LGEGRPPLP	9	Unmodified	_LGEGRPPLP_					0	0	0		L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|5|1|sense;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|4|1|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|5|1|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|5|1|sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	468.269084	934.523616	-0.14714	-6.8903E-05	-4.5546	-0.0021328	-4.7017	-0.0022017	468.2689915505479	35.413	0.71579	35.489	35.151	35.867	0.075306	-0.0031241	-0.0020445	NaN	25.399	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307690			22725	12436	12761	12762							0.053734911343553904
LGELGVFASY	10	Unmodified	_LGELGVFASY_					0	0	0		ENSG00000001461|ENST00000374399|NIPAL3;nc|ENSG00000001461|Q6P499-2|NIPAL3;nc|ENSG00000001461|Q6P499-3|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	ENSG00000001461|ENST00000374399|NIPAL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7765502929688	2	528.274032	1054.53351	0.49854	0.00026337	0.50393	0.00026622	1.0025	0.00052958	528.2741326891702	80.713	0.71906	80.686	80.439	81.158	-0.026825					52	28	2	0	0	0	0.22916	1	20996	20996		29.082	1.4528	1	517910			22726	287	12762	12763	28902	28902					0.008426343491009902
LGELQLRCERA	11	Unmodified	_LGELQLRCERA_					0	0	0			REV__ENST00000463734.1_1_20:25204516-25206230:+|nuORF	REV__ENST00000463734.1_1_20:25204516-25206230:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.75567626953125	3	429.899445	1286.6765	0.18032	7.7518E-05	0.28454	0.00012232	0.46485	0.00019984	429.89951712823756	40.097	0.64395	40.189	39.887	40.531	0.09267					53	22	3	0	0	0	0.3287	1	8537	8537		12.228	3.2513	1	705160	+		22727	21257	12763	12764	28903	28903					0.04463318468651778
LGELRKQHYV	10	Unmodified	_LGELRKQHYV_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;ENST00000538236.1_1_12:123345767-123346160:+|nuORF	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.9031066894531	3	414.903295	1241.68806	-0.34415	-0.00014279	-0.77907	-0.00032324	-1.1232	-0.00046603	414.9032499584321	38.74	1.9079	38.74	37.895	39.803	0					209	68	5	0	0	0	0.35961	4	8022	8022;8069;8112;8164		10.899	4.6646	1	2228500			22728	3515	12764	12765	28904;28905;28906;28907	28904					0.07687883554308428
LGEQDLVPA	9	Unmodified	_LGEQDLVPA_					0	0	0		ENST00000491270.1_1_10:76995548-76995725:-|nuORF	ENST00000491270.1_1_10:76995548-76995725:-|nuORF	ENST00000491270.1_1_10:76995548-76995725:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.241455078125	2	471.250557	940.486562	0.13275	6.2559E-05	0.57759	0.00027219	0.71034	0.00033475	471.25027127912955	22.987	0.51763	22.942	22.679	23.197	-0.044867					28	18	2	0	0	0	0.25314	1	3322	3322		15.847	0	1	45479			22729	11176	12765	12766	28908	28908					0.013937747979525739
LGEQDLVPA	9	Unmodified	_LGEQDLVPA_					0	0	0		ENST00000491270.1_1_10:76995548-76995725:-|nuORF	ENST00000491270.1_1_10:76995548-76995725:-|nuORF	ENST00000491270.1_1_10:76995548-76995725:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	471.250557	940.486562	-0.05743	-2.7064E-05	1.0674	0.00050301	1.01	0.00047595	471.2502976386224	22.931	0.48001	22.844	22.658	23.138	-0.087608	-0.049352	0.0002894	NaN	15.847	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57283			22730	11176	12765	12766							0.013937747979525739
LGEQLITMSC	10	Unmodified	_LGEQLITMSC_					0	0	0		ENST00000469464.1_1_10:1262889-1279753:-|nuORF;ADARB2|p.S683Rfs*27|1|0.37|ENSG00000185736|chr10:1183364-1183364|G/-|frameshift_variant;ENSG00000185736|ENST00000381312|ADARB2	ENST00000469464.1_1_10:1262889-1279753:-|nuORF	ENST00000469464.1_1_10:1262889-1279753:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7648315429688	2	547.76466	1093.51477	0.44837	0.0002456	-0.31773	-0.00017404	0.13064	7.1563E-05	547.7646195266136	73.068	0.86187	73.068	72.799	73.661	0					77	30	4	0	0	0	0.19345	1	18655	18655		33.445	2.1766	1	684350			22731	13	12766	12767	28909	28909					-0.028249866086298425
LGEQLITMSC	10	Unmodified	_LGEQLITMSC_					0	0	0		ENST00000469464.1_1_10:1262889-1279753:-|nuORF;ADARB2|p.S683Rfs*27|1|0.37|ENSG00000185736|chr10:1183364-1183364|G/-|frameshift_variant;ENSG00000185736|ENST00000381312|ADARB2	ENST00000469464.1_1_10:1262889-1279753:-|nuORF	ENST00000469464.1_1_10:1262889-1279753:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7647094726562	2	547.76466	1093.51477	0.45427	0.00024883	-0.81532	-0.00044661	-0.36106	-0.00019777	547.7645141130691	73.08	0.81959	73.133	72.814	73.633	0.053841					72	29	4	0	0	0	0.13784	1	18639	18639		40.239	8.9709	1	677190			22732	13	12766	12767	28910	28910					-0.028249866086298425
LGEQLITMSC	10	Unmodified	_LGEQLITMSC_					0	0	0		ENST00000469464.1_1_10:1262889-1279753:-|nuORF;ADARB2|p.S683Rfs*27|1|0.37|ENSG00000185736|chr10:1183364-1183364|G/-|frameshift_variant;ENSG00000185736|ENST00000381312|ADARB2	ENST00000469464.1_1_10:1262889-1279753:-|nuORF	ENST00000469464.1_1_10:1262889-1279753:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7647094726562	2	547.76466	1093.51477	0.60773	0.00033289	-0.17251	-9.4496E-05	0.43521	0.0002384	547.7646182212317	73.126	1.034	73.096	72.71	73.744	-0.029305					92	37	4	0	0	0	0.13784	2	18656	18656;18703		40.239	5.8375	1	694010			22733	13	12766	12767	28911;28912	28911					-0.028249866086298425
LGEQRKWWF	9	Unmodified	_LGEQRKWWF_					0	0	0			REV__ENST00000266031.8_1_3:50340471-50340939:-|nuORF	REV__ENST00000266031.8_1_3:50340471-50340939:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.5627746582031	3	417.220735	1248.64038	-0.20155	-8.4089E-05	0.42381	0.00017682	0.22226	9.2733E-05	417.22117014746766	23.56	0.55442	23.56	23.362	23.917	0					23	18	2	0	0	0	0.25612	1	3482	3482		8.1555	0	1	45161	+		22734	19655	12767	12768	28913	28913					0.02600229354129624
LGEQRLAK	8	Unmodified	_LGEQRLAK_					0	0	0			REV__ENST00000535486.2_1_12:7342729-7343282:+|nuORF	REV__ENST00000535486.2_1_12:7342729-7343282:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.164306640625	2	457.774534	913.534515	-0.044579	-2.0407E-05	1.5058	0.00068933	1.4612	0.00066892	457.77549556804814	26.274	0.24651	26.274	26.133	26.379	0					15	8	2	0	0	0	0.31088	1	4309	4309		15.847	3.3156	1	87994	+		22735	15974	12768	12769	28914	28914					0.07428893508654255
LGESLAMKEK	10	Unmodified	_LGESLAMKEK_					0	0	0		ENSG00000135951|ENST00000393483|TSGA10	ENSG00000135951|ENST00000393483|TSGA10	ENSG00000135951|ENST00000393483|TSGA10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.29931640625	2	553.299724	1104.5849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.23	1	116.25	115.75	116.75	0.020988								0	0	0	0.37807	1	30162	30162		2.9952	0.49676	1				22736	3925	12769	12770	28915	28915					0.0367863505148307
LGEVQKAE	8	Unmodified	_LGEVQKAE_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;nc|ENSG00000129493|Q86XA9-3|HEATR5A;ENST00000549185.5_3_14:31803609-31872202:-|nuORF	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2372131347656	2	437.23745	872.460347	0.42133	0.00018422	0.64724	0.000283	1.0686	0.00046722	437.23737990894745	77.403	1.1318	77.372	76.96	78.092	-0.031334					89	40	4	0	0	0	0.44734	1	19989	19989		6.7232	6.7232	1	561710			22737	3427	12770	12771	28916	28916					0.019015056264720442
LGEYDRPDWR	10	Unmodified	_LGEYDRPDWR_					0	0	0			REV__nc|ENSG00000196811|P07510-2|CHRNG	REV__nc|ENSG00000196811|P07510-2|CHRNG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.88262939453125	3	436.210676	1305.6102	0.081564	3.5579E-05	-0.2477	-0.00010805	-0.16613	-7.2469E-05	436.21059050086626	20.847	1.3418	20.847	20.285	21.627	0					114	46	4	0	0	0	0.32122	1	2796	2796		2.086	0.1585	1	422820	+		22738	18688	12771	12772	28917	28917					-0.03038174101743607
LGFFRFCL	8	Unmodified	_LGFFRFCL_					0	0	0		ENST00000402714.6_2_14:100610240-100610324:+|nuORF	ENST00000402714.6_2_14:100610240-100610324:+|nuORF	ENST00000402714.6_2_14:100610240-100610324:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7953796386719	2	501.765123	1001.51569	0.13672	6.8601E-05	-1.1219	-0.00056293	-0.98518	-0.00049433	501.76486455777683	16.439	0.44683	16.324	16.139	16.586	-0.11434					26	15	2	0	0	0	0.34185	1	1339	1339		10.183	1.5901	1	47083			22739	10201	12772	12773	28918	28918					0.014996406132581797
LGFRNKQRGGR	11	Unmodified	_LGFRNKQRGGR_					0	0	0			REV__ENSG00000005007|ENST00000262803|UPF1	REV__ENSG00000005007|ENST00000262803|UPF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.92559814453125	3	430.249688	1287.72723	-0.34321	-0.00014767	-0.29663	-0.00012762	-0.63984	-0.00027529	430.2489711620092	24.719	0.83539	24.688	24.373	25.209	-0.031408					77	28	4	0	0	0	0.32719	1	3814	3814		7.0371	3.45	1	327540	+		22740	13338	12773	12774	28919	28919					0.09488028628538814
LGFRTRPWWIG	11	Unmodified	_LGFRTRPWWIG_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7528381347656	3	463.591051	1387.75132	0.44475	0.00020618	-1.4387	-0.00066698	-0.99397	-0.0004608	463.59052055982124	75.214	0.28194	75.182	75.005	75.286	-0.031487					17	10	2	0	0	0	0.33202	1	19327	19327		2.8433	0.4085	1	117670	+		22741	16149	12774	12775	28920	28920					0.07295869062227212
LGGAYKQLV	9	Unmodified	_LGGAYKQLV_					0	0	0		nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1	nc|ENSG00000119682|O15033-2|AREL1	nc|ENSG00000119682|O15033-2|AREL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.77862548828125	2	474.779285	947.544017	0.36006	0.00017095	-2.1208	-0.0010069	-1.7608	-0.00083597	474.77830245645106	77.078	0.5028	77.133	76.953	77.456	0.055412					31	17	3	0	0	0	0.072844	1	19869	19869		44.407	4.4497	1	310060			22742	2895	12775	12776	28921	28921					0.06814661794180665
LGGAYKQLV	9	Unmodified	_LGGAYKQLV_					0	0	0		nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1	nc|ENSG00000119682|O15033-2|AREL1	nc|ENSG00000119682|O15033-2|AREL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	474.779285	947.544017	0.57471	0.00027286	-2.3663	-0.0011235	-1.7916	-0.0008506	474.7782475703499	77.182	0.52232	77.151	76.96	77.482	-0.031334	-0.0045765	-0.00032061	NaN	44.407	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321520			22743	2895	12775	12776							0.06814661794180665
LGGEVAESAQK	11	Unmodified	_LGGEVAESAQK_					0	0	0		nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;nc|ENSG00000157212|Q6ZW49-2|PAXIP1;ENSG00000157212|ENST00000404141|PAXIP1;ENST00000464717.5_1_7:154739579-154754102:-|nuORF	nc|ENSG00000157212|Q6ZW49-1|PAXIP1	nc|ENSG00000157212|Q6ZW49-1|PAXIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.783203125	2	544.782753	1087.55095	0.39973	0.00021776	0.42294	0.00023041	0.82267	0.00044817	544.7829242006832	23.136	1.0038	23.049	22.403	23.407	-0.08761					48	35	2	0	0	0	0.42762	1	3371	3371		7.609	0	1	88593			22744	10703	12776	12777	28922	28922					0.010679298841068885
LGGFAELGK	9	Unmodified	_LGGFAELGK_					0	0	0			REV__nc|ENSG00000134240|P54868-3|HMGCS2	REV__nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.2636413574219	2	446.25036	890.486168	-0.0073427	-3.2767E-06	-0.11539	-5.1495E-05	-0.12274	-5.4771E-05	446.2501973326804	18.98	1.367	18.862	18.065	19.432	-0.11739					98	47	3	0	0	0	0.27532	1	2029	2029		12.532	0.89125	1	232740	+		22745	15659	12777	12778	28923	28923					0.03654399868753444
LGGFAELGK	9	Unmodified	_LGGFAELGK_					0	0	0			REV__nc|ENSG00000134240|P54868-3|HMGCS2	REV__nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	446.25036	890.486168	0.076164	3.3988E-05	-0.0028596	-1.2761E-06	0.073305	3.2712E-05	446.25030693405796	18.827	2.189	18.827	17.66	19.849	0	-0.015787	0.00013049	NaN	12.532	124	76	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228810	+		22746	15659	12777	12778							0.03654399868753444
LGGFAELGK	9	Unmodified	_LGGFAELGK_					0	0	0			REV__nc|ENSG00000134240|P54868-3|HMGCS2	REV__nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	446.25036	890.486168	-0.0073427	-3.2767E-06	-0.11539	-5.1495E-05	-0.12274	-5.4771E-05	446.2501973326804	18.98	1.367	18.862	18.065	19.432	-0.11739	0.019871	3.0051E-05	NaN	12.532	98	47	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232740	+		22747	15659	12777	12778							0.03654399868753444
LGGFAELGK	9	Unmodified	_LGGFAELGK_					0	0	0			REV__nc|ENSG00000134240|P54868-3|HMGCS2	REV__nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	446.25036	890.486168	-0.00059401	-2.6508E-07	-0.28112	-0.00012545	-0.28172	-0.00012572	446.2501184193958	18.897	1.5984	18.838	17.794	19.393	-0.058172	-0.0040839	-0.00011786	NaN	12.532	116	56	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253050	+		22748	15659	12777	12778							0.03654399868753444
LGGKRPLR	8	Unmodified	_LGGKRPLR_					0	0	0		ENST00000487245.5_1_6:31239370-31239763:-|nuORF	ENST00000487245.5_1_6:31239370-31239763:-|nuORF	ENST00000487245.5_1_6:31239370-31239763:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7929382324219	2	448.793061	895.571569	0.15225	6.833E-05	-0.14516	-6.5147E-05	0.0070935	3.1835E-06	448.792923081537	24.625	0.65771	24.569	24.315	24.972	-0.055931					42	22	3	0	0	0	0.4419	1	3810	3810		8.5933	0	1	181550			22749	11117	12778	12779	28924	28924					0.11960609845073122
LGGPRLCPV	9	Unmodified	_LGGPRLCPV_					0	0	0		ENSG00000186994|ENST00000330915|KANK3;nc|ENSG00000186994|Q6NY19-1|KANK3	ENSG00000186994|ENST00000330915|KANK3	ENSG00000186994|ENST00000330915|KANK3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2692565917969	2	456.260205	910.505857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.851	1	39.95	39.45	40.45	0.099407								0	0	0	0.21357	1	8438	8438		18.135	2.3668	1				22750	7658	12779	12780	28925	28925					0.04702452607864416
LGGPVHFR	8	Unmodified	_LGGPVHFR_					0	0	0			REV__ENST00000507944.5_1_3:98241389-98241692:-|nuORF	REV__ENST00000507944.5_1_3:98241389-98241692:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.26580810546875	2	441.750862	881.487171	-0.0045666	-2.0173E-06	0.54258	0.00023969	0.53802	0.00023767	441.75085685882163	31.564	0.66664	31.607	31.156	31.823	0.042366					46	23	3	0	0	0	0.26518	1	5888	5888		34.187	13.316	1	1052100	+		22751	21766	12780	12781	28926	28926					0.04168659028334787
LGGPVHFR	8	Unmodified	_LGGPVHFR_					0	0	0			REV__ENST00000507944.5_1_3:98241389-98241692:-|nuORF	REV__ENST00000507944.5_1_3:98241389-98241692:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	441.750862	881.487171	0.016396	7.243E-06	0.47074	0.00020795	0.48713	0.00021519	441.7508295235317	31.551	0.74903	31.551	31.118	31.867	0	-0.0050159	2.4447E-05	NaN	34.187	40	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	670210	+		22752	21766	12780	12781							0.04168659028334787
LGGPVHFR	8	Unmodified	_LGGPVHFR_					0	0	0			REV__ENST00000507944.5_1_3:98241389-98241692:-|nuORF	REV__ENST00000507944.5_1_3:98241389-98241692:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	441.750862	881.487171	0.17231	7.6117E-05	0.26917	0.0001189	0.44147	0.00019502	441.7507260805768	31.47	0.65193	31.511	31.15	31.802	0.040991	-0.04544	-0.00015364	NaN	34.187	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	949080	+		22753	21766	12780	12781							0.04168659028334787
LGGQPALGP	9	Unmodified	_LGGQPALGP_					0	0	0		ENSG00000177943|ENST00000317446|MAMDC4;nc|ENSG00000177943|Q6UXC1|MAMDC4	ENSG00000177943|ENST00000317446|MAMDC4	ENSG00000177943|ENST00000317446|MAMDC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5717468261719	2	405.229428	808.444303	-0.11899	-4.8219E-05	0.17673	7.1616E-05	0.057739	2.3397E-05	405.229015970132	32.869	0.6944	32.925	32.675	33.369	0.055309					42	24	3	0	0	0	0.23783	1	6330	6330		18.135	0	1	87117			22754	7026	12781	12782	28927	28927					0.032418441802292364
LGGRPGPVVL	10	Unmodified	_LGGRPGPVVL_					0	0	0			REV__ENSG00000111058|ENST00000548058|ACSS3	REV__ENSG00000111058|ENST00000548058|ACSS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2342834472656	2	482.800552	963.58655	0.40588	0.00019596	-0.22207	-0.00010722	0.1838	8.874E-05	482.80014204927295	44.301	0.31655	44.369	44.223	44.54	0.068569					17	11	2	0	0	0	0.31051	1	9803	9803		7.2892	0	1	92851	+		22755	14701	12782	12783	28928	28928					0.10330056922407493
LGGRYDAK	8	Unmodified	_LGGRYDAK_					0	0	0			REV__ENSG00000163395|ENST00000335211|IGFN1	REV__ENSG00000163395|ENST00000335211|IGFN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.2366638183594	2	440.237784	878.461016	-0.07865	-3.4625E-05	-0.73991	-0.00032574	-0.81856	-0.00036036	440.2371941271704	23.388	0.41911	23.388	23.197	23.616	0					20	14	2	0	0	0	0.40115	1	3452	3452		19.257	1.122	1	86819	+		22756	17051	12783	12784	28929	28929					0.016923450661806783
LGGRYPPR	8	Unmodified	_LGGRYPPR_					0	0	0			REV__nc|ENSG00000033122|Q96NW7-2|LRRC7	REV__nc|ENSG00000033122|Q96NW7-2|LRRC7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.27911376953125	2	458.261594	914.508634	0.14281	6.5445E-05	-1.4959	-0.00068549	-1.353	-0.00062005	458.2608348901433	29.2	0.46898	29.212	29	29.469	0.012264					26	16	2	0	0	0	0.29134	1	5224	5224		26.341	0	1	215800	+		22757	13500	12784	12785	28930	28930					0.04796044057036397
LGGVGTQTGDP	11	Unmodified	_LGGVGTQTGDP_					0	0	0		ENST00000337943.9_1_17:79895011-79895113:-|nuORF	ENST00000337943.9_1_17:79895011-79895113:-|nuORF	ENST00000337943.9_1_17:79895011-79895113:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.6345520019531	2	501.248546	1000.48254	0.43653	0.00021881	0.64839	0.00032501	1.0849	0.00054382	501.24886932908686	94.375	0.62375	94.373	94.03	94.654	-0.0020142					72	51	2	0	0	0	0.32951	1	25186	25186		8.7454	0	1	126710			22758	9499	12785	12786	28931	28931					-0.0176831469575518
LGGVHVML	8	Unmodified	_LGGVHVML_					0	0	0			REV__ENST00000531536.1_1_11:118076554-118083145:-|nuORF	REV__ENST00000531536.1_1_11:118076554-118083145:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.23809814453125	2	413.236199	824.457844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.828	1	67.812	67.312	68.312	-0.016296								0	0	0	0.3683	1	17041	17041		6.3541	1.1234	1		+		22759	16908	12786	12787	28932	28932					0.03859378687820936
LGGVHVML	8	Unmodified	_LGGVHVML_					0	0	0			REV__ENST00000531536.1_1_11:118076554-118083145:-|nuORF	REV__ENST00000531536.1_1_11:118076554-118083145:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2378845214844	2	413.236199	824.457844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.705	1	68.686	68.186	69.186	-0.019157								0	0	0	0.3683	1	17311	17311		6.3541	0.59368	1		+		22760	16908	12786	12787	28933	28933					0.03859378687820936
LGGVRLPLL	9	Unmodified	_LGGVRLPLL_					0	0	0			REV__ENST00000374694.2_1_10:35928201-35929404:-|nuORF	REV__ENST00000374694.2_1_10:35928201-35929404:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.31378173828125	2	469.313295	936.612037	-0.33524	-0.00015733	0.81867	0.00038421	0.48343	0.00022688	469.3136291918408	65.263	0.46557	65.352	65.11	65.576	0.088882					35	16	3	0	0	0	0.1669	1	16245	16245		28.487	3.813	1	317740	+		22761	20465	12787	12788	28934	28934					0.14119531444839595
LGGYAIKWL	9	Unmodified	_LGGYAIKWL_					0	0	0			REV__ENSG00000203730|ENST00000367565|TEDDM1	REV__ENSG00000203730|ENST00000367565|TEDDM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.807861328125	2	510.797478	1019.5804	0.35388	0.00018076	-1.1213	-0.00057275	-0.7674	-0.00039198	510.79668297455675	63.189	1.2946	63.284	62.825	64.119	0.095722					78	46	2	0	0	0	0.24311	1	15845	15845		11.64	3.047	1	1672100	+		22762	18904	12788	12789	28935	28935					0.07139538690887548
LGGYAIKWL	9	Unmodified	_LGGYAIKWL_					0	0	0			REV__ENSG00000203730|ENST00000367565|TEDDM1	REV__ENSG00000203730|ENST00000367565|TEDDM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	510.797478	1019.5804	0.36772	0.00018783	-0.93572	-0.00047796	-0.568	-0.00029013	510.7967495246507	63.303	1.1741	63.303	62.905	64.079	0	0.0093475	7.0369E-05	NaN	7.2892	72	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1793500	+		22763	18904	12788	12789							0.07139538690887548
LGGYAIKWL	9	Unmodified	_LGGYAIKWL_					0	0	0			REV__ENSG00000203730|ENST00000367565|TEDDM1	REV__ENSG00000203730|ENST00000367565|TEDDM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	510.797478	1019.5804	0.3122	0.00015947	-0.9406	-0.00048046	-0.6284	-0.00032099	510.79676499852997	63.303	1.1861	63.294	62.804	63.99	-0.0085526	0.00022488	6.5386E-05	NaN	7.2892	72	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1740600	+		22764	18904	12788	12789							0.07139538690887548
LGGYIQKK	8	Unmodified	_LGGYIQKK_					0	0	0		ENSG00000139687|ENST00000267163|RB1;RB1|p.K640Ifs*22|1|0.06|ENSG00000139687|chr13:48456307-48456308|-/TACATCTTGTCTATTTAATTGGTATTAT|frameshift_variant;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENSG00000139687|ENST00000267163|RB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.8836364746094	2	453.774003	905.533452	0.1409	6.3935E-05	0.088359	4.0095E-05	0.22926	0.00010403	453.77421274436085	30.736	0.37373	30.764	30.523	30.896	0.027946					15	12	2	0	0	0	0.32435	1	5662	5662		23.148	10.617	1	109640			22765	4258;11531	12789	12790	28936	28936					0.076906791397505
LGHGLMVF	8	Unmodified	_LGHGLMVF_					0	0	0			REV__ENSG00000165186|ENST00000379361|PTCHD1	REV__ENSG00000165186|ENST00000379361|PTCHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2381591796875	2	437.236199	872.457844	0.26636	0.00011646	2.8654	0.0012529	3.1318	0.0013693	437.23748044650176	77.359	1.0238	77.359	76.931	77.955	0					76	37	3	0	0	0	0.43455	2	19951	19951;19986		11.114	4.7604	1	549920	+		22766	17215	12790	12791	28937;28938	28937					0.016513786878249448
LGHGTPRSGPL	11	Unmodified	_LGHGTPRSGPL_					0	0	0			REV__ENSG00000171532|ENST00000302584|NEUROD2	REV__ENSG00000171532|ENST00000302584|NEUROD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.3018188476562	2	546.301447	1090.58834	0.29595	0.00016168	0.1002	5.4738E-05	0.39614	0.00021641	546.3017479201918	26.132	0.47922	26.132	25.9	26.379	0					36	16	3	0	0	0	0.42762	1	4234	4234		7.609	1.4032	1	96186	+		22767	17650	12791	12792	28939	28939					0.046670659403844184
LGHHFPSLV	9	Unmodified	_LGHHFPSLV_					0	0	0			REV__ENST00000457354.6_1_14:51713877-51716045:+|nuORF	REV__ENST00000457354.6_1_14:51713877-51716045:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7656555175781	2	503.777077	1005.5396	0.10779	5.43E-05	2.135	0.0010756	2.2428	0.0011299	503.7783155692342	23.017	0.83567	22.929	22.435	23.27	-0.087608					69	29	3	0	0	0	0.30166	1	3375	3375		8.5933	0.68312	1	140720	+		22768	21181	12792	12793	28940	28940					0.037051973712891595
LGHKRLREVF	10	Unmodified	_LGHKRLREVF_					0	0	0			REV__ENST00000554401.1_1_14:102549349-102551760:-|nuORF	REV__ENST00000554401.1_1_14:102549349-102551760:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.3153381347656	3	418.919168	1253.73567	-0.2951	-0.00012362	-1.0958	-0.00045904	-1.3909	-0.00058267	418.91894729149203	27.66	0.54062	27.66	27.441	27.981	0					38	18	3	0	0	0	0.32137	1	4805	4805		0.62683	0	1	94342	+		22769	13895	12793	12794	28941	28941					0.11895582545139405
LGHLCQAK	8	Unmodified	_LGHLCQAK_					0	0	0		ENSG00000161692|ENST00000315005|DBF4B	ENSG00000161692|ENST00000315005|DBF4B	ENSG00000161692|ENST00000315005|DBF4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.5792541503906	2	435.23673	868.458907	-0.20634	-8.9808E-05	-3.2711	-0.0014237	-3.4775	-0.0015135	435.23549233325235	22.812	1.1613	22.724	22.03	23.191	-0.08761					65	41	3	0	0	0	0.34218	1	3171	3171		9.3474	0	1	233650			22770	5526	12794	12795	28942	28942					0.01941593056722013
LGHLVKTTR	9	Unmodified	_LGHLVKTTR_					0	0	0			REV__nc|ENSG00000008283|P49447-2|CYB561	REV__nc|ENSG00000008283|P49447-2|CYB561	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.3328857421875	2	512.816733	1023.61891	0.20784	0.00010658	0.56345	0.00028895	0.77129	0.00039553	512.8172243016193	32.793	0.43726	32.847	32.682	33.119	0.054375					29	15	3	0	0	0	0.24993	1	6347	6347		8.7454	1.4562	1	159180	+		22771	13398	12795	12796	28943	28943					0.10804844325400609
LGHLVVSL	8	Unmodified	_LGHLVVSL_					0	0	0		nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-4|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.88311767578125	2	419.263271	836.511988	0.19467	8.1619E-05	-0.70052	-0.0002937	-0.50584	-0.00021208	419.2626950736972	40.843	0.38842	40.935	40.693	41.082	0.092674					18	14	2	0	0	0	0.33995	1	8701	8701		10.183	3.8293	1	99224			22772	5429	12796	12797	28944	28944					0.08719294111040199
LGHLVVSL	8	Unmodified	_LGHLVVSL_					0	0	0		nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-4|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	419.263271	836.511988	-0.15422	-6.466E-05	-0.21763	-9.1243E-05	-0.37185	-0.0001559	419.2630747233285	40.953	0.35139	40.953	40.688	41.039	0	0.0087398	0.00022317	NaN	10.183	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103960			22773	5429	12796	12797							0.08719294111040199
LGHPLQSLFG	10	Unmodified	_LGHPLQSLFG_					0	0	0			REV__ENST00000485332.7_1_X:221743-228403:-|nuORF	REV__ENST00000485332.7_1_X:221743-228403:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.3219604492188	2	534.795466	1067.57638	0.44413	0.00023752	-3.4208	-0.0018294	-2.9766	-0.0015919	534.7937102073025	25.015	0.56063	25.015	24.736	25.296	0					42	19	3	0	0	0	0.31889	1	3975	3975		6.2058	0	1	123060	+		22774	18042	12797	12798	28945	28945					0.045294491971844764
LGHSKKKQK	9	Unmodified	_LGHSKKKQK_					0	0	0			REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9	REV__nc|ENSG00000131951|Q6ZRR7-2|LRRC9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.8055419921875	2	527.330008	1052.64546	0.72293	0.00038122	-0.6543	-0.00034503	0.068624	3.6188E-05	527.3295344180165	40.355	0.44113	40.355	40.193	40.634	0					18	15	2	0	0	0	0.25066	1	8604	8604		11.64	0.81637	1	143770	+		22775	15541	12798	12799	28946	28946					0.12124533216751843
LGHTFLAF	8	Unmodified	_LGHTFLAF_					0	0	0		ENST00000435830.6_1_3:37354991-37360805:+|nuORF	ENST00000435830.6_1_3:37354991-37360805:+|nuORF	ENST00000435830.6_1_3:37354991-37360805:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.9236145019531	2	453.247621	904.480688	-0.043409	-1.9675E-05	-3.9179	-0.0017758	-3.9614	-0.0017955	453.24529413302895	29.55	0.52092	29.563	29.359	29.88	0.013475					27	17	2	0	0	0	0.33995	1	5348	5348		15.768	4.6538	1	62802			22776	10514	12799	12800	28947	28947					0.024627210769381236
LGHTLVVEF	9	Unmodified	_LGHTLVVEF_					0	0	0		ENSG00000185946|ENST00000423855|RNPC3;nc|ENSG00000185946|Q96LT9-2|RNPC3	ENSG00000185946|ENST00000423855|RNPC3	ENSG00000185946|ENST00000423855|RNPC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3002014160156	2	507.784567	1013.55458	0.39011	0.00019809	3.0775	0.0015627	3.4676	0.0017608	508.288439348416	58.993	0.88428	58.979	58.631	59.515	-0.014267					46	30	2	0	0	0	0.1669	1	14383	14383		28.487	1.6032	1	406780			22777	7570	12800	12801	28948	28948					0.04834644448612835
LGHVEDDYI	9	Unmodified	_LGHVEDDYI_					0	0	0		ENSG00000111231|ENST00000228827|GPN3;nc|ENSG00000111231|Q9UHW5-2|GPN3;nc|ENSG00000111231|Q9UHW5-3|GPN3	ENSG00000111231|ENST00000228827|GPN3	ENSG00000111231|ENST00000228827|GPN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.792724609375	2	530.750921	1059.48729	0.45804	0.00024311	0.84931	0.00045077	1.3074	0.00069388	531.2517700487222	30.321	0.47677	30.349	30.02	30.496	0.027948					22	16	2	0	0	0	0.25526	1	5476	5476		7.9102	0	1	65073			22778	2354	12801	12802	28949	28949					-0.040074305529969934
LGHVGKLL	8	Unmodified	_LGHVGKLL_					0	0	0			REV__ENST00000477241.1_1_2:239037864-239040370:+|nuORF	REV__ENST00000477241.1_1_2:239037864-239040370:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.770751953125	2	418.771263	835.527973	-1.3392	-0.00056081	0.16527	6.9209E-05	-1.1739	-0.00049161	418.7711794065434	34.735	1.0706	34.81	34.383	35.454	0.075306					81	38	3	0	0	0	0.2705	1	6910	6910		34.187	2.0704	1	529180	+		22779	16239	12802	12803	28950	28950					0.10363000347933848
LGHVIRKG	8	Unmodified	_LGHVIRKG_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.2893371582031	2	440.279786	878.54502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.695	1	27.695	27.195	28.195	0								0	0	0	0.37664	1	4734	4734		2.5775	0	1				22780	1403	12803	12804	28951	28951					0.10088920953762681
LGIDQHKA	8	Unmodified	_LGIDQHKA_					0	0	0			REV__nc|ENSG00000101190|Q9UL49-2|TCFL5	REV__nc|ENSG00000101190|Q9UL49-2|TCFL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.6239013671875	2	441.245609	880.476666	-0.059448	-2.6231E-05	0.12675	5.5926E-05	0.067298	2.9695E-05	441.2456686533238	27.227	0.60167	27.206	26.926	27.528	-0.021412					28	20	2	0	0	0	0.34218	1	4673	4673		2.3027	0	1	114800	+		22781	14252	12804	12805	28952	28952					0.031646315832290384
LGIEQRLQ	8	Unmodified	_LGIEQRLQ_					0	0	0		ENST00000606299.1_1_5:148886668-148892751:-|nuORF	ENST00000606299.1_1_5:148886668-148892751:-|nuORF	ENST00000606299.1_1_5:148886668-148892751:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.79248046875	2	478.779816	955.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.177	1	43.255	42.755	43.755	0.077515								0	0	0	0.28879	1	9460	9460		30.637	3.7529	1				22782	12296	12805	12806	28953	28953					0.0655287616308442
LGIFVFFRKL	10	Unmodified	_LGIFVFFRKL_					0	0	0		nc|ENSG00000004948|P30988-4|CALCR;nc|ENSG00000004948|P30988-1|CALCR;nc|ENSG00000004948|P30988-6|CALCR	nc|ENSG00000004948|P30988-4|CALCR;nc|ENSG00000004948|P30988-6|CALCR	nc|ENSG00000004948|P30988-6|CALCR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.57098388671875	3	413.92526	1238.75395	-0.15773	-6.5288E-05	1.8925	0.00078335	1.7348	0.00071806	413.9262148132622	33.282	0.5269	33.282	33.011	33.538	0					29	18	3	0	0	0	0.31942	1	6499	6499		3.5871	0	1	75424			22783	12555;12556	12806	12807	28954	28954					0.1441232446718459
LGIGTKMLNH	10	Unmodified	_LGIGTKMLNH_					0	0	0		ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7496337890625	2	542.302601	1082.59065	0.31821	0.00017257	3.3824	0.0018343	3.7006	0.0020069	542.3042845481713	22.43	0.29152	22.43	22.303	22.594	0					13	9	2	0	0	0	0.31629	1	3149	3149		10.074	1.3285	1	36386			22784	2999	12807	12808	28955	28955					0.05265778353850692
LGIIRLYDYLQ	11	Unmodified	_LGIIRLYDYLQ_					0	0	0		ENSG00000175520|ENST00000311659|UBQLN3	ENSG00000175520|ENST00000311659|UBQLN3	ENSG00000175520|ENST00000311659|UBQLN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.92193603515625	3	456.262489	1365.76564	0.19848	9.0559E-05	0.87042	0.00039714	1.0689	0.0004877	456.262747321564	75.188	0.51488	75.188	74.934	75.449	0					43	18	3	0	0	0	0.31599	1	19324	19324		19.144	0	1	421170			22785	6872	12808	12809	28956	28956					0.09738476699840248
LGILTFIW	8	Unmodified	_LGILTFIW_					0	0	0		ENSG00000197296|ENST00000396825|FITM2	ENSG00000197296|ENST00000396825|FITM2	ENSG00000197296|ENST00000396825|FITM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7434997558594	2	481.789121	961.56369	0.52508	0.00025298	0.44482	0.00021431	0.9699	0.00046729	481.78877876162466	20.654	0.46777	20.601	20.418	20.886	-0.05291					24	16	2	0	0	0	0.34337	1	2639	2639		2.3027	0	1	61172			22786	7950	12809	12810	28957	28957					0.08137037804954161
LGIPNGKL	8	Unmodified	_LGIPNGKL_					0	0	0			REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.923828125	2	406.255446	810.496338	-0.71629	-0.000291	2.645	0.0010746	1.9287	0.00078356	406.256532446184	34.674	0.36285	34.752	34.474	34.837	0.077377					16	12	2	0	0	0	0.34185	1	6792	6792		5.7604	0	1	57441	+		22787	14784	12810	12811	28958	28958					0.08351007594001203
LGIQQYVF	8	Unmodified	_LGIQQYVF_					0	0	0			REV__PAM|p.L580Cfs*5|1|0.35|ENSG00000145730|chr5:103005161-103005161|T/-|frameshift_variant	REV__PAM|p.L580Cfs*5|1|0.35|ENSG00000145730|chr5:103005161-103005161|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.80853271484375	2	484.26601	966.517468	0.62786	0.00030405	0.10239	4.9585E-05	0.73025	0.00035364	484.2659789739086	47.692	0.3963	47.735	47.401	47.797	0.043324					24	14	2	0	0	0	0.33995	1	10748	10748		5.7604	0	1	383940	+		22788	16303	12811	12812	28959	28959					0.03286972902856178
LGIRYLRKRLT	11	Unmodified	_LGIRYLRKRLT_					0	0	0			REV__nc|ENSG00000120645|Q9UPP2-2|IQSEC3	REV__nc|ENSG00000120645|Q9UPP2-2|IQSEC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.27740478515625	3	463.633139	1387.87759	0.043581	2.0206E-05	-0.060917	-2.8243E-05	-0.017336	-8.0374E-06	463.6329727679874	49.192	0.50322	49.224	49.045	49.548	0.032043					37	17	3	0	0	0	0.3333	1	11280	11280		1.3296	0	1	225650	+		22789	15089	12812	12813	28960	28960					0.19916375567481737
LGITSPAGKK	10	Unmodified	_LGITSPAGKK_					0	0	0		ENSG00000100889|ENST00000216780|PCK2;nc|ENSG00000100889|Q16822-2|PCK2;nc|ENSG00000100889|Q16822-3|PCK2;ENST00000558674.5_1_14:24567646-24569225:+|nuORF	ENSG00000100889|ENST00000216780|PCK2	ENSG00000100889|ENST00000216780|PCK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.6138916015625	2	486.297842	970.581131	0.32264	0.0001569	-0.79079	-0.00038456	-0.46815	-0.00022766	486.29741509220935	32.542	0.40884	32.597	32.441	32.85	0.054375					26	14	3	0	0	0	0.27979	1	6207	6207		27.629	1.3607	1	233370			22790	1641	12813	12814	28961	28961					0.09466333339946686
LGIWIYSYSNS	11	Unmodified	_LGIWIYSYSNS_					0	0	0			REV__ENSG00000143954|ENST00000272324|REG3G	REV__ENSG00000143954|ENST00000272324|REG3G	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8819274902344	3	434.883677	1301.6292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.606	1	24.606	24.106	25.106	0								0	0	0	0.37347	1	3801	3801		3.0723	0.98626	1		+		22791	16213	12814	12815	28962	28962					-0.009546375306626942
LGIYWDREYEE	11	Unmodified	_LGIYWDREYEE_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7951965332031	3	491.561263	1471.66196	0.1863	9.1576E-05	0.67108	0.00032988	0.85737	0.00042145	491.56198939762453	42.182	0.83866	42.182	41.757	42.595	0					81	32	4	0	0	0	0.3331	1	9031	9031		1.0136	0.60531	1	1510200	+		22792	15320	12815	12816	28963	28963					-0.05500475198459753
LGIYWDREYEE	11	Unmodified	_LGIYWDREYEE_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.5618591308594	3	491.561263	1471.66196	0.4799	0.0002359	-0.6996	-0.0003439	-0.2197	-0.000108	491.56149740268927	41.917	0.76253	42.007	41.807	42.57	0.090248					72	27	4	0	0	0	0.43513	1	9135	9135		6.6235	3.9922	1	1474500	+		22793	15320	12815	12816	28964	28964					-0.05500475198459753
LGIYWDREYEE	11	Unmodified	_LGIYWDREYEE_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7950744628906	3	491.561263	1471.66196	0.4799	0.0002359	-0.6996	-0.0003439	-0.2197	-0.000108	491.56149740268927	41.917	0.76253	42.007	41.807	42.57	0.090248					72	27	4	0	0	0	0.3325	1	9041	9041		4.1166	3.419	1	1474500	+		22794	15320	12815	12816	28965	28965					-0.05500475198459753
LGIYWDREYEE	11	Unmodified	_LGIYWDREYEE_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7955322265625	3	491.561263	1471.66196	0.26525	0.00013039	0.38329	0.00018841	0.64854	0.0003188	491.5614246547514	41.528	0.3915	41.618	41.378	41.77	0.090252					29	17	3	0	0	0	0.3331	1	8914	8914		2.2527	1.0379	1	2162700	+		22795	15320	12815	12816	28966	28966					-0.05500475198459753
LGIYWDREYEE	11	Unmodified	_LGIYWDREYEE_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.5619201660156	3	491.561263	1471.66196	0.57317	0.00028175	-0.31333	-0.00015402	0.25984	0.00012773	491.56147920525444	41.901	0.76023	41.997	41.686	42.446	0.096622					77	28	4	0	0	0	0.43513	1	9074	9074		6.6235	3.9922	1	1672500	+		22796	15320	12815	12816	28967	28967					-0.05500475198459753
LGIYWDREYEE	11	Unmodified	_LGIYWDREYEE_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.79522705078125	3	491.561263	1471.66196	0.57317	0.00028175	-0.31333	-0.00015402	0.25984	0.00012773	491.56147920525444	41.901	0.76023	41.997	41.686	42.446	0.096622					77	28	4	0	0	0	0.33146	1	9027	9027		6.6235	3.9922	1	1672500	+		22797	15320	12815	12816	28968	28968					-0.05500475198459753
LGKAIRARARK	11	Unmodified	_LGKAIRARARK_					0	0	0			REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.5725402832031	3	413.942195	1238.80476	-0.35735	-0.00014792	-0.27641	-0.00011442	-0.63376	-0.00026234	413.9420824946369	28.328	0.65385	28.328	27.924	28.578	0					34	22	2	0	0	0	0.33287	1	4980	4980		1.3296	0	1	93824	+		22798	16968	12816	12817	28969	28969					0.1949066656470677
LGKAIRARARK	11	Unmodified	_LGKAIRARARK_					0	0	0			REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5726013183594	3	413.942195	1238.80476	0.080251	3.3219E-05	-1.105	-0.00045742	-1.0248	-0.0004242	413.9415445674673	28.341	0.57392	28.337	28.055	28.629	-0.0042572					33	20	2	0	0	0	0.33094	1	4981	4981		4.7159	0	1	160880	+		22799	16968	12816	12817	28970	28970					0.1949066656470677
LGKATARGR	9	Unmodified	_LGKATARGR_					0	0	0		ENST00000425773.1_1_20:57090064-57090148:-|nuORF	ENST00000425773.1_1_20:57090064-57090148:-|nuORF	ENST00000425773.1_1_20:57090064-57090148:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2855529785156	2	465.2856	928.556647	-0.0083411	-3.881E-06	0.00093249	4.3387E-07	-0.0074086	-3.4471E-06	465.2855740229231	79.761	1.1284	79.761	79.441	80.569	0					136	42	4	0	0	0	0.25989	2	20697	20697;20748		14.838	4.0143	1	6267400			22800	10409	12817	12818	28971;28972	28971					0.08951117977085232
LGKATARGR	9	Unmodified	_LGKATARGR_					0	0	0		ENST00000425773.1_1_20:57090064-57090148:-|nuORF	ENST00000425773.1_1_20:57090064-57090148:-|nuORF	ENST00000425773.1_1_20:57090064-57090148:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2854919433594	2	465.2856	928.556647	0.034668	1.613E-05	-0.018845	-8.7682E-06	0.015823	7.3622E-06	465.2855521975359	79.782	1.1898	79.843	79.353	80.543	0.061417					134	45	5	0	0	0	0.25989	1	20715	20715		14.838	4.0143	1	5421200			22801	10409	12817	12818	28973	28973					0.08951117977085232
LGKATARGR	9	Unmodified	_LGKATARGR_					0	0	0		ENST00000425773.1_1_20:57090064-57090148:-|nuORF	ENST00000425773.1_1_20:57090064-57090148:-|nuORF	ENST00000425773.1_1_20:57090064-57090148:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.28558349609375	2	465.2856	928.556647	0.23855	0.00011099	-0.25256	-0.00011751	-0.014009	-6.5184E-06	465.2854501627056	79.855	1.2792	79.826	79.371	80.65	-0.028931					132	46	4	0	0	0	0.25989	2	20686	20686;20737		14.838	4.0143	1	6764700			22802	10409	12817	12818	28974;28975	28974					0.08951117977085232
LGKDVRYLHFL	11	Unmodified	_LGKDVRYLHFL_					0	0	0		ENSG00000070526|ENST00000156626|ST6GALNAC1;ENST00000592042.5_1_17:74621414-74633692:-|nuORF	ENSG00000070526|ENST00000156626|ST6GALNAC1	ENSG00000070526|ENST00000156626|ST6GALNAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2623596191406	3	454.262712	1359.76631	-0.14221	-6.4602E-05	-1.2562	-0.00057064	-1.3984	-0.00063525	454.2623475168669	27.677	0.95704	27.656	27.411	28.368	-0.021412					106	33	5	0	0	0	0.38765	1	4765	4765		12.856	5.3789	1	3501800			22803	931	12818	12819	28976	28976					0.10081316139530827
LGKDVRYLHFL	11	Unmodified	_LGKDVRYLHFL_					0	0	0		ENSG00000070526|ENST00000156626|ST6GALNAC1;ENST00000592042.5_1_17:74621414-74633692:-|nuORF	ENSG00000070526|ENST00000156626|ST6GALNAC1	ENSG00000070526|ENST00000156626|ST6GALNAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2623291015625	3	454.262712	1359.76631	-0.20478	-9.3022E-05	-1.2162	-0.00055246	-1.4209	-0.00064548	454.26236808200406	27.649	1.1642	27.638	27.374	28.538	-0.01156					118	40	5	0	0	0	0.31508	1	4759	4759		20.871	9.2398	1	3729000			22804	931	12818	12819	28977	28977					0.10081316139530827
LGKEEKTA	8	Unmodified	_LGKEEKTA_					0	0	0		ENST00000366767.7_1_1:227180734-227180926:-|nuORF	ENST00000366767.7_1_1:227180734-227180926:-|nuORF	ENST00000366767.7_1_1:227180734-227180926:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.24749755859375	2	438.245275	874.475997	0.081736	3.5821E-05	-0.029335	-1.2856E-05	0.052401	2.2964E-05	438.24517508594505	19.796	0.69273	19.68	19.433	20.126	-0.11592					42	23	3	0	0	0	0.28969	1	2475	2475		28.487	8.0332	1	219240			22805	9713	12819	12820	28978	28978					0.033737921435204044
LGKEPLVFQNR	11	Unmodified	_LGKEPLVFQNR_					0	0	0		nc|ENSG00000133454|Q8IUG5-2|MYO18B;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.2502746582031	3	434.250583	1299.72992	-0.28333	-0.00012303	-0.40964	-0.00017789	-0.69297	-0.00030092	434.25028043585684	24.595	0.74954	24.563	24.203	24.953	-0.031408					56	25	3	0	0	0	0.42246	1	3806	3806		8.2864	0.44039	1	237120			22806	3712	12820	12821	28979	28979					0.09204439242853368
LGKGPKVFH	9	Unmodified	_LGKGPKVFH_					0	0	0		ENSG00000136546|ENST00000643258|SCN7A;SCN7A|p.R1640Lfs*12|1|0.04|ENSG00000136546|chr2:166405712-166405713|-/AATAAAAGAAAAGTAGAGA|frameshift_variant;ENST00000424326.5_1_2:167262092-167297919:-|nuORF	ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7953796386719	2	491.795269	981.575986	0.28504	0.00014018	0.34095	0.00016768	0.62599	0.00030786	491.7952102936452	41.463	1.4349	41.553	41.35	42.785	0.090252					137	56	4	0	0	0	0.30166	2	8954	8954;8993		8.5933	0.68312	1	21505000			22807	3982	12821	12822	28980;28981	28980					0.08446074267988024
LGKGWAAAA	9	Unmodified	_LGKGWAAAA_					0	0	0			REV__nc|ENSG00000143028|Q5VXT5-2|SYPL2	REV__nc|ENSG00000143028|Q5VXT5-2|SYPL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.73748779296875	2	422.73742	843.460287	0.21393	9.0435E-05	0.50711	0.00021437	0.72104	0.00030481	422.73746880176867	47.908	1.1159	47.908	47.578	48.694	0					81	39	3	0	0	0	0.1669	1	10942	10942		28.487	0.31361	1	5742900	+		22808	16143	12822	12823	28982	28982					0.032295504171088396
LGKILIGMF	9	Unmodified	_LGKILIGMF_					0	0	0			REV__nc|ENSG00000131558|Q96A65-2|EXOC4	REV__nc|ENSG00000131558|Q96A65-2|EXOC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.3042297363281	2	496.304081	990.59361	0.47767	0.00023707	-0.065784	-3.2649E-05	0.41189	0.00020442	496.3039220074158	72.104	1.8162	72.104	71.402	73.218	0					151	65	3	0	0	0	0.2616	1	18363	18363		14.582	5.2343	1	1130700	+		22809	15523	12823	12824	28983	28983					0.09793653478629949
LGKILIGMF	9	Unmodified	_LGKILIGMF_					0	0	0			REV__nc|ENSG00000131558|Q96A65-2|EXOC4	REV__nc|ENSG00000131558|Q96A65-2|EXOC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.3035583496094	2	496.304081	990.59361	0.41687	0.0002069	-0.18064	-8.9651E-05	0.23624	0.00011725	496.30387669744533	74.068	3.1764	74.068	73.191	76.367	0					302	112	4	0	0	0	0.34374	1	19288	19288		2.3027	2.3027	1	4670700	+		22810	15523	12823	12824	28984	28984					0.09793653478629949
LGKILIGMF	9	Unmodified	_LGKILIGMF_					0	0	0			REV__nc|ENSG00000131558|Q96A65-2|EXOC4	REV__nc|ENSG00000131558|Q96A65-2|EXOC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.30438232421875	2	496.304081	990.59361	0.49758	0.00024695	-0.065097	-3.2308E-05	0.43249	0.00021464	496.30394012061043	72.202	1.7999	72.258	71.43	73.23	0.056572					180	65	3	0	0	0	0.29662	1	18441	18441		9.3474	4.1168	1	1122500	+		22811	15523	12823	12824	28985	28985					0.09793653478629949
LGKKDITL	8	Unmodified	_LGKKDITL_					0	0	0			REV__ENST00000296411.10_1_4:99982510-99982633:+|nuORF	REV__ENST00000296411.10_1_4:99982510-99982633:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	444.2386779785156	2	444.28166	886.548768	0.23416	0.00010403	-0.30446	-0.00013527	-0.070302	-3.1234E-05	444.2814620813177	38.044	0.615	38.141	37.927	38.542	0.097527					42	21	3	0	0	0	0.33993	1	7829	7829		16.942	0	1	488230	+		22812	19792	12824	12825	28986	28986					0.10095545936940198
LGKLSLEPKII	11	Unmodified	_LGKLSLEPKII_					0	0	0		ENSG00000155016|ENST00000332884|CYP2U1	ENSG00000155016|ENST00000332884|CYP2U1	ENSG00000155016|ENST00000332884|CYP2U1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.9291687011719	3	404.26383	1209.76966	-0.22089	-8.93E-05	-0.083198	-3.3634E-05	-0.30409	-0.00012293	404.26379812228333	41.497	0.8045	41.497	40.847	41.651	0					68	29	3	0	0	0	0.3331	1	8858	8858		2.2527	2.2527	1	2271600			22813	5153	12825	12826	28987	28987					0.1731656619356272
LGKMLITLF	9	Unmodified	_LGKMLITLF_					0	0	0		ENST00000609104.5_1_10:11551634-11569506:-|nuORF	ENST00000609104.5_1_10:11551634-11569506:-|nuORF	ENST00000609104.5_1_10:11551634-11569506:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.317138671875	2	518.317189	1034.61982	0.48043	0.00024901	-0.28166	-0.00014599	0.19876	0.00010302	518.3169614341426	74.243	2.8627	74.243	72.506	75.369	0					186	101	2	0	0	0	0.32733	2	19080	19080;19134		4.756	0	1	2040100			22814	12319	12826	12827	28988;28989	28988					0.10389922650097105
LGKMLITLF	9	Unmodified	_LGKMLITLF_					0	0	0		ENST00000609104.5_1_10:11551634-11569506:-|nuORF	ENST00000609104.5_1_10:11551634-11569506:-|nuORF	ENST00000609104.5_1_10:11551634-11569506:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3170776367188	2	518.317189	1034.61982	0.28269	0.00014652	-0.06463	-3.3499E-05	0.21806	0.00011303	518.3170450969914	74.204	2.9158	74.256	72.538	75.454	0.052361					235	104	4	0	0	0	0.32733	1	19055	19055		4.756	0	1	1660300			22815	12319	12826	12827	28990	28990					0.10389922650097105
LGKMLITLF	9	Unmodified	_LGKMLITLF_					0	0	0		ENST00000609104.5_1_10:11551634-11569506:-|nuORF	ENST00000609104.5_1_10:11551634-11569506:-|nuORF	ENST00000609104.5_1_10:11551634-11569506:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3172607421875	2	518.317189	1034.61982	0.49679	0.00025749	-0.051654	-2.6773E-05	0.44513	0.00023072	518.3170881604384	76.271	4.1828	76.239	74.838	79.021	-0.031479					502	157	4	0	0	0	0.32733	1	20379	20379		4.756	0	1	7331400			22816	12319	12826	12827	28991	28991					0.10389922650097105
LGKMLITLF	9	Unmodified	_LGKMLITLF_					0	0	0		ENST00000609104.5_1_10:11551634-11569506:-|nuORF	ENST00000609104.5_1_10:11551634-11569506:-|nuORF	ENST00000609104.5_1_10:11551634-11569506:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3171997070312	2	518.317189	1034.61982	0.44447	0.00023038	-0.18415	-9.5449E-05	0.26032	0.00013493	518.316914650911	79.414	1.7472	79.385	78.954	80.701	-0.028923					159	66	4	0	0	0	0.32733	1	20611	20611		4.756	0	1	1027000			22817	12319	12826	12827	28992	28992					0.10389922650097105
LGKPFLNI	8	Unmodified	_LGKPFLNI_					0	0	0		nc|ENSG00000182218|Q96JK4-2|HHIPL1;ENSG00000182218|ENST00000330710|HHIPL1	nc|ENSG00000182218|Q96JK4-2|HHIPL1	nc|ENSG00000182218|Q96JK4-2|HHIPL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2621765136719	2	451.278921	900.543289	-0.081009	-3.6558E-05	1.8737	0.00084555	1.7927	0.00080899	451.2797434697088	30.01	0.41181	30.037	29.838	30.25	0.027157					23	13	3	0	0	0	0.34046	1	5386	5386		5.2307	2.6532	1	336480			22818	7280	12827	12828	28993	28993					0.08903867145113509
LGKQRART	8	Unmodified	_LGKQRART_					0	0	0			REV__ENST00000375199.7_1_1:19570195-19571411:-|nuORF	REV__ENST00000375199.7_1_1:19570195-19571411:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2861022949219	2	465.2856	928.556647	-0.0083411	-3.881E-06	0.00093249	4.3387E-07	-0.0074086	-3.4471E-06	465.2855740229231	79.761	1.1284	79.761	79.441	80.569	0					136	42	4	0	0	0	0.46155	1	20918	20918		1.8442	0	1	6267400	+		22819	20473	12828	12829	28994	28994					0.08951117977085232
LGKSQRNK	8	Unmodified	_LGKSQRNK_					0	0	0		ENST00000503199.1_1_5:21882899-21882950:+|nuORF	ENST00000503199.1_1_5:21882899-21882950:+|nuORF	ENST00000503199.1_1_5:21882899-21882950:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2369079589844	2	465.777608	929.540663	0.30746	0.00014321	-0.12157	-5.6624E-05	0.1859	8.6586E-05	465.7772527056575	19.788	0.54928	19.733	19.485	20.034	-0.055691					33	19	2	0	0	0	0.34294	1	2429	2429		7.2892	0	1	92755			22820	11288	12829	12830	28995	28995					0.07307411740180214
LGKVKLSSL	9	Unmodified	_LGKVKLSSL_					0	0	0			REV__SLC3A2|p.K300Rfs*31|1|0.36|ENSG00000168003|chr11:62882057-62882057|A/-|frameshift_variant	REV__SLC3A2|p.K300Rfs*31|1|0.36|ENSG00000168003|chr11:62882057-62882057|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.27239990234375	2	472.810585	943.606617	0.025223	1.1926E-05	0.012333	5.8314E-06	0.037557	1.7757E-05	472.81056801696894	22.326	0.36969	22.277	22.064	22.434	-0.049377					20	12	2	0	0	0	0.25526	1	3113	3113		7.9102	0	1	57889	+		22821	17430	12830	12831	28996	28996					0.13255807862390157
LGKVVKTY	8	Unmodified	_LGKVVKTY_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.28387451171875	2	454.284203	906.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.094	1	89.185	88.685	89.685	0.090569								0	0	0	0.37183	1	23555	23555		4.756	0.42677	1		+		22822	17128	12831	12832	28997	28997					0.09683849799569089
LGKWKKEPEL	10	Unmodified	_LGKWKKEPEL_					0	0	0		nc|ENSG00000156299|Q13009-2|TIAM1;ENSG00000156299|ENST00000541036|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.27978515625	3	409.908046	1226.70231	0.11618	4.7624E-05	0.9272	0.00038007	1.0434	0.00042769	409.9083298812228	16.755	0.63303	16.693	16.468	17.101	-0.062534					56	22	3	0	0	0	0.32033	1	1376	1376		4.1895	0.31317	1	60896			22823	5230	12832	12833	28998	28998					0.09802535982612426
LGLALGRRDDF	11	Unmodified	_LGLALGRRDDF_					0	0	0			REV__ENSG00000165449|ENST00000395348|SLC16A9	REV__ENSG00000165449|ENST00000395348|SLC16A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2214660644531	3	411.56305	1231.66732	-1.1607	-0.0004777	1.7532	0.00072156	0.59252	0.00024386	411.5641192779868	34.895	0.79664	34.97	34.685	35.481	0.075306					100	28	5	0	0	0	0.33202	1	7045	7045		5.0475	1.1712	1	652610	+		22824	17236	12833	12834	28999	28999					0.06075293174649232
LGLARLRP	8	Unmodified	_LGLARLRP_					0	0	0			REV__ENSG00000135722|ENST00000258200|FBXL8	REV__ENSG00000135722|ENST00000258200|FBXL8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.8811340332031	2	448.295436	894.57632	0.10304	4.6191E-05	-0.21441	-9.6118E-05	-0.11137	-4.9927E-05	448.2952859222996	26.365	0.56843	26.365	26.133	26.701	0					31	19	2	0	0	0	0.34337	1	4264	4264		5.2307	0	1	187110	+		22825	15758	12834	12835	29000	29000					0.12481493987831982
LGLARLRP	8	Unmodified	_LGLARLRP_					0	0	0			REV__ENSG00000135722|ENST00000258200|FBXL8	REV__ENSG00000135722|ENST00000258200|FBXL8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	448.295436	894.57632	0.30112	0.00013499	-0.21515	-9.6452E-05	0.085963	3.8537E-05	448.2952863861419	26.369	0.42596	26.347	26.158	26.584	-0.022238	0.014573	-9.7005E-05	NaN	5.2307	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194160	+		22826	15758	12834	12835							0.12481493987831982
LGLCTVLIYLH	11	Unmodified	_LGLCTVLIYLH_					0	0	0			REV__ENSG00000268606|ENST00000684311|MAGEA2	REV__ENSG00000268606|ENST00000684311|MAGEA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.1828918457031	3	415.573898	1243.69987	-0.072847	-3.0273E-05	3.3606	0.0013966	3.2878	0.0013663	415.5758297769514	24.983	0.65484	24.983	24.673	25.328	0					35	22	2	0	0	0	0.32344	1	3916	3916		19.626	9.8617	1	88398	+		22827	18251	12835	12836	29001	29001					0.0877636425327637
LGLDVLIE	8	Unmodified	_LGLDVLIE_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.26092529296875	2	436.260394	870.506234	0.31921	0.00013926	1.3093	0.00057121	1.6286	0.00071047	436.26095154030673	45.788	0.66399	45.788	45.53	46.194	0					40	23	2	0	0	0	0.31375	1	10258	10258		26.341	0	1	649070	+		22828	16751	12836	12837	29002	29002					0.06580150808724738
LGLDVLIE	8	Unmodified	_LGLDVLIE_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	436.260394	870.506234	0.24061	0.00010497	1.0925	0.0004766	1.3331	0.00058157	436.260901683479	45.493	0.69838	45.552	45.253	45.951	0.059834	-0.075571	-0.00018543	NaN	26.341	38	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	812480	+		22829	16751	12836	12837							0.06580150808724738
LGLDVLIE	8	Unmodified	_LGLDVLIE_					0	0	0			REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	REV__nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	436.260394	870.506234	0.12646	5.5169E-05	1.588	0.00069277	1.7144	0.00074794	436.26110677885436	45.478	0.82183	45.543	45.274	46.096	0.065048	-0.084676	0.00024689	NaN	26.341	42	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	684340	+		22830	16751	12836	12837							0.06580150808724738
LGLEAEKLR	9	Unmodified	_LGLEAEKLR_					0	0	0			REV__ENST00000520892.5_2_8:141900864-142011029:-|nuORF	REV__ENST00000520892.5_2_8:141900864-142011029:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.814208984375	2	514.808574	1027.60259	-0.227	-0.00011686	-1.562	-0.00080413	-1.789	-0.000921	514.8080345249834	12.847	0.14877	12.779	12.702	12.851	-0.067496					8	4	2	0	0	0	0.34681	1	228	228		1.8442	0	1	48590	+		22831	21892	12837	12838	29003	29003					0.08989718368638933
LGLELMELSKR	11	Unmodified	_LGLELMELSKR_					0	0	0			REV__nc|ENSG00000126214|Q07866-8|KLC1	REV__nc|ENSG00000126214|Q07866-8|KLC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.9259033203125	3	430.247962	1287.72206	-0.11127	-4.7874E-05	3.3525	0.0014424	3.2413	0.0013945	430.24880831688205	24.663	0.96097	24.663	24.367	25.328	0					63	32	3	0	0	0	0.32912	1	3853	3853		11.631	1.3161	1	532440	+		22832	15301	12838	12839	29004	29004					0.08970543931059183
LGLERTLLP	9	Unmodified	_LGLERTLLP_					0	0	0		ENST00000464490.1_1_22:24985500-24985914:-|nuORF;ENSG00000178026|ENST00000318753|LRRC75B	ENST00000464490.1_1_22:24985500-24985914:-|nuORF	ENST00000464490.1_1_22:24985500-24985914:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.31292724609375	2	506.313492	1010.61243	0.17682	8.9529E-05	-0.18396	-9.314E-05	-0.0071334	-3.6117E-06	506.31325640900775	25.966	0.44267	25.944	25.691	26.133	-0.022238					34	15	3	0	0	0	0.19905	1	4248	4248		23.79	1.0535	1	370660			22833	7032	12839	12840	29005	29005					0.10754906374052098
LGLFFLTTP	9	Unmodified	_LGLFFLTTP_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2930603027344	2	504.791861	1007.56917	0.7097	0.00035825	2.4192	0.0012212	3.1289	0.0015795	505.29361342530376	37.246	0.89201	37.246	36.875	37.767	0					90	31	4	0	0	0	0.155	1	7629	7629		30.225	8.4782	1	1372700			22834	7834	12840	12841	29006	29006					0.06568716596746071
LGLFWILIFF	10	Unmodified	_LGLFWILIFF_					0	0	0		nc|ENSG00000152463|Q9NV23-2|OLAH	nc|ENSG00000152463|Q9NV23-2|OLAH	nc|ENSG00000152463|Q9NV23-2|OLAH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.87548828125	2	634.875728	1267.7369	0.21224	0.00013475	-0.92523	-0.00058741	-0.71299	-0.00045266	634.8751910348765	18.21	0.59653	18.21	17.991	18.588	0					36	20	3	0	0	0	0.40888	1	1841	1841		1.8442	0.6509	1	75541			22835	12763	12841	12842	29007	29007					0.11374403861373139
LGLGLLAWR	9	Unmodified	_LGLGLLAWR_					0	0	0		nc|ENSG00000142513|Q9BZG2-2|ACP4;ENSG00000142513|ENST00000270593|ACP4	nc|ENSG00000142513|Q9BZG2-2|ACP4	nc|ENSG00000142513|Q9BZG2-2|ACP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.80877685546875	2	499.810919	997.607286	0.2211	0.00011051	-1.1818	-0.0005907	-0.96074	-0.00048019	500.31251997021184	30.879	0.83569	30.907	30.496	31.332	0.027946					69	29	3	0	0	0	0.30166	1	5804	5804		8.5933	1.304	1	218380			22836	4448	12842	12843	29008	29008					0.10838647302068694
LGLGSWYSDS	10	Unmodified	_LGLGSWYSDS_					0	0	0			REV__ENSG00000182463|ENST00000371497|TSHZ2	REV__ENSG00000182463|ENST00000371497|TSHZ2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2836303710938	2	542.750921	1083.48729	0.35995	0.00019536	-0.73594	-0.00039943	-0.37599	-0.00020407	542.7505886329827	22.122	0.69314	22.122	21.87	22.563	0					40	24	2	0	0	0	0.31847	1	3106	3106		6.7232	0	1	198610	+		22837	18199	12843	12844	29009	29009					-0.051114305530063575
LGLGTHRVK	9	Unmodified	_LGLGTHRVK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.8033447265625	2	490.803626	979.592698	0.13641	6.6951E-05	-0.38595	-0.00018943	-0.24954	-0.00012247	490.8033468727551	22.604	0.84182	22.604	22.331	23.173	0					69	28	4	0	0	0	0.25202	1	3209	3209		6.7232	0.51738	1	292460			22838	6752	12844	12845	29010	29010					0.10208575153944821
LGLGTHRVK	9	Unmodified	_LGLGTHRVK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.80401611328125	2	490.803626	979.592698	0.07476	3.6693E-05	0.46862	0.00023	0.54338	0.00026669	490.8037655231645	28.606	1.0213	28.606	28.023	29.045	0.0004673					75	36	3	0	0	0	0.30623	1	4943	4943		7.9102	0	1	508520			22839	6752	12844	12845	29011	29011					0.10208575153944821
LGLGVKGW	8	Unmodified	_LGLGVKGW_					0	0	0			REV__ENSG00000183067|ENST00000380588|IGSF5	REV__ENSG00000183067|ENST00000380588|IGSF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.9085693359375	2	415.250163	828.485774	0.89298	0.00037081	3.7537	0.0015587	4.6467	0.0019295	415.2520409067537	33.725	0.27863	33.791	33.676	33.955	0.06636					12	9	2	0	0	0	0.34185	1	6563	6563		5.7604	0	1	37918	+		22840	18235	12845	12846	29012	29012					0.06467024939570365
LGLHFLWFCF	10	Unmodified	_LGLHFLWFCF_					0	0	0		ENST00000396591.7_1_5:68396752-68400539:+|nuORF;ENST00000380860.8_1_5:68396752-68399789:+|nuORF	ENST00000396591.7_1_5:68396752-68400539:+|nuORF	ENST00000396591.7_1_5:68396752-68400539:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.9137878417969	3	428.219567	1281.63687	-0.17816	-7.629E-05	-1.3771	-0.00058971	-1.5553	-0.000666	428.2188681813351	23.682	0.6479	23.61	23.231	23.879	-0.072559					37	22	2	0	0	0	0.32033	1	3595	3595		4.1895	0	1	236060			22841	10120	12846	12847	29013	29013					0.007318432559031862
LGLKNWRLTDT	11	Unmodified	_LGLKNWRLTDT_					0	0	0		ENSG00000091106|ENST00000402280|NLRC4;nc|ENSG00000091106|Q9NPP4-2|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.5819396972656	3	439.582221	1315.72483	-0.071654	-3.1498E-05	-0.38498	-0.00016923	-0.45663	-0.00020073	439.58198984089756	27.41	0.61076	27.41	27.121	27.732	0					41	20	3	0	0	0	0.41892	1	4647	4647		8.7518	1.2747	1	114670			22842	1395	12847	12848	29014	29014					0.079601353802218
LGLKNWRLTDT	11	Unmodified	_LGLKNWRLTDT_					0	0	0		ENSG00000091106|ENST00000402280|NLRC4;nc|ENSG00000091106|Q9NPP4-2|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	439.582221	1315.72483	-0.1388	-6.1012E-05	-0.48759	-0.00021434	-0.62638	-0.00027535	439.58206446029754	27.346	0.53739	27.324	27.13	27.667	-0.02141	-0.050711	-9.3722E-05	NaN	8.7518	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117700			22843	1395	12847	12848							0.079601353802218
LGLKNWRLTDT	11	Unmodified	_LGLKNWRLTDT_					0	0	0		ENSG00000091106|ENST00000402280|NLRC4;nc|ENSG00000091106|Q9NPP4-2|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	439.582221	1315.72483	-0.07854	-3.4525E-05	-0.34105	-0.00014992	-0.41959	-0.00018444	439.582126870584	27.402	0.51316	27.39	27.101	27.614	-0.01156	0.015447	9.9529E-05	NaN	8.7518	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160350			22844	1395	12847	12848							0.079601353802218
LGLLLLWTL	9	Unmodified	_LGLLLLWTL_					0	0	0			REV__nc|ENSG00000065618|Q9UMD9-2|COL17A1	REV__nc|ENSG00000065618|Q9UMD9-2|COL17A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2958984375	2	521.338978	1040.6634	0.34553	0.00018014	-3.6719	-0.0019143	-3.3263	-0.0017342	521.3370787433172	38.234	0.31142	38.234	38.149	38.46	0					13	10	2	0	0	0	0.2451	1	7940	7940		10.824	0	1	142500	+		22845	13669	12848	12849	29015	29015					0.14469855418906263
LGLLVLELF	9	Unmodified	_LGLLVLELF_					0	0	0			REV__ENSG00000176402|ENST00000312891|GJC3	REV__ENSG00000176402|ENST00000312891|GJC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.30804443359375	2	508.823161	1015.63177	0.42495	0.00021622	-1.1111	-0.00056536	-0.68617	-0.00034914	508.82257627766086	44.607	0.16531	44.682	44.583	44.749	0.075047					8	5	2	0	0	0	0.28128	1	9890	9890		11.64	1.5664	1	87243	+		22846	17935	12849	12850	29016	29016					0.12457862664928143
LGLLVVFILS	10	Unmodified	_LGLLVVFILS_					0	0	0		nc|ENSG00000185985|Q9H156-2|SLITRK2;ENSG00000185985|ENST00000335565|SLITRK2	nc|ENSG00000185985|Q9H156-2|SLITRK2	nc|ENSG00000185985|Q9H156-2|SLITRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.3521728515625	2	537.352086	1072.68962	0.15291	8.2165E-05	0.39096	0.00021008	0.54387	0.00029225	537.3522083432078	28.236	0.51486	28.232	28.085	28.599	-0.0042572					36	18	3	0	0	0	0.38233	1	4888	4888		6.7232	0	1	273150			22847	7578	12850	12851	29017	29017					0.15618124590378102
LGLLVVFILS	10	Unmodified	_LGLLVVFILS_					0	0	0		nc|ENSG00000185985|Q9H156-2|SLITRK2;ENSG00000185985|ENST00000335565|SLITRK2	nc|ENSG00000185985|Q9H156-2|SLITRK2	nc|ENSG00000185985|Q9H156-2|SLITRK2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	537.352086	1072.68962	0.19811	0.00010646	0.53975	0.00029004	0.73787	0.00039649	537.3523476567212	28.204	0.63446	28.204	28.094	28.729	0	-0.0031163	0.00011642	NaN	6.7232	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134440			22848	7578	12850	12851							0.15618124590378102
LGLLVVFILS	10	Unmodified	_LGLLVVFILS_					0	0	0		nc|ENSG00000185985|Q9H156-2|SLITRK2;ENSG00000185985|ENST00000335565|SLITRK2	nc|ENSG00000185985|Q9H156-2|SLITRK2	nc|ENSG00000185985|Q9H156-2|SLITRK2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	537.352086	1072.68962	0.16939	9.1023E-05	0.40152	0.00021576	0.57091	0.00030678	537.3522841754993	28.185	0.60805	28.185	28.078	28.686	0.0004673	-0.021855	-3.2146E-05	NaN	6.7232	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193610			22849	7578	12850	12851							0.15618124590378102
LGLLVYRKR	9	Unmodified	_LGLLVYRKR_					0	0	0		ENSG00000125810|ENST00000246006|CD93	ENSG00000125810|ENST00000246006|CD93	ENSG00000125810|ENST00000246006|CD93	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.340576171875	2	559.36385	1116.71315	0.23905	0.00013372	-0.12168	-6.8063E-05	0.11737	6.5654E-05	559.3637758992558	30.913	0.58319	30.913	30.619	31.202	0					61	20	4	0	0	0	0.26168	1	5794	5794		1.8442	0	1	238580			22850	3230	12851	12852	29018	29018					0.1594598314754876
LGLLWPLT	8	Unmodified	_LGLLWPLT_					0	0	0		ENST00000264245.8_2_3:119135176-119135248:+|nuORF	ENST00000264245.8_2_3:119135176-119135248:+|nuORF	ENST00000264245.8_2_3:119135176-119135248:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2688293457031	2	456.781296	911.54804	0.14376	6.5668E-05	-0.42502	-0.00019414	-0.28126	-0.00012847	456.7809615777458	37.672	0.47803	37.77	37.503	37.981	0.097527					23	17	2	0	0	0	0.32778	1	7715	7715		20.871	0	1	168480			22851	9024	12852	12853	29019	29019					0.08872751287890424
LGLLWPLT	8	Unmodified	_LGLLWPLT_					0	0	0		ENST00000264245.8_2_3:119135176-119135248:+|nuORF	ENST00000264245.8_2_3:119135176-119135248:+|nuORF	ENST00000264245.8_2_3:119135176-119135248:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	456.781296	911.54804	0.20914	9.5532E-05	-0.12859	-5.874E-05	0.080546	3.6792E-05	456.78099017307864	37.694	0.34974	37.785	37.609	37.959	0.090881	0.0069196	0.00020038	NaN	20.871	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186610			22852	9024	12852	12853							0.08872751287890424
LGLLWRKGF	9	Unmodified	_LGLLWRKGF_					0	0	0			REV__ENSG00000177108|ENST00000319374|ZDHHC22	REV__ENSG00000177108|ENST00000319374|ZDHHC22	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.317138671875	2	545.332019	1088.64948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.61	1	114.59	114.09	115.09	-0.019096								0	0	0	0.26334	1	29749	29749		2.0598	0	1		+		22853	17974	12853	12854	29020	29020					0.10870622710467615
LGLNPGKRK	9	Unmodified	_LGLNPGKRK_					0	0	0		ENST00000439685.6_1_3:112358751-112359896:-|nuORF;ENST00000475181.1_1_3:112359734-112359896:-|nuORF	ENST00000439685.6_1_3:112358751-112359896:-|nuORF	ENST00000439685.6_1_3:112358751-112359896:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.5618591308594	2	491.811451	981.608348	0.38671	0.00019019	-0.21929	-0.00010785	0.16742	8.2339E-05	491.8112426398033	42.263	0.71345	42.348	42.093	42.806	0.085197					51	25	3	0	0	0	0.21137	1	9135	9135		24.674	2.9272	1	1002000			22854	10546	12854	12855	29021	29021					0.11680861670993181
LGLNPGKRK	9	Unmodified	_LGLNPGKRK_					0	0	0		ENST00000439685.6_1_3:112358751-112359896:-|nuORF;ENST00000475181.1_1_3:112359734-112359896:-|nuORF	ENST00000439685.6_1_3:112358751-112359896:-|nuORF	ENST00000439685.6_1_3:112358751-112359896:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.811451	981.608348	0.42298	0.00020803	-0.15851	-7.7957E-05	0.26447	0.00013007	491.8112840456567	42.219	0.62554	42.31	42.037	42.663	0.091362	-0.018954	3.6945E-05	NaN	24.674	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	938040			22855	10546	12854	12855							0.11680861670993181
LGLPLRLL	8	Unmodified	_LGLPLRLL_					0	0	0			REV__ENST00000537708.1_1_12:6669555-6669804:-|nuORF	REV__ENST00000537708.1_1_12:6669555-6669804:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.28399658203125	2	447.810388	893.606223	0.58885	0.00026369	-0.4256	-0.00019059	0.16325	7.3106E-05	447.81008237065055	74.573	0.70045	74.573	74.343	75.043	0					51	24	3	0	0	0	0.30749	1	19261	19261		28.173	7.302	1	1042800	+		22856	22095	12855	12856	29022	29022					0.1551643293316829
LGLQRPGIL	9	Unmodified	_LGLQRPGIL_					0	0	0			REV__ENST00000439083.5_3_2:218766616-218766691:-|nuORF	REV__ENST00000439083.5_3_2:218766616-218766691:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.80853271484375	2	483.808377	965.6022	0.48128	0.00023285	0.082542	3.9934E-05	0.56382	0.00027278	483.80834610607457	47.412	0.55777	47.412	47.214	47.771	0					45	19	3	0	0	0	0.055495	1	10773	10773		50.855	0	1	1239300	+		22857	21033	12856	12857	29023	29023					0.11802343439467222
LGLQTLLSL	9	Unmodified	_LGLQTLLSL_					0	0	0		nc|ENSG00000053702|Q9BQI9-2|NRIP2;ENSG00000053702|ENST00000337508|NRIP2	nc|ENSG00000053702|Q9BQI9-2|NRIP2	nc|ENSG00000053702|Q9BQI9-2|NRIP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.81060791015625	2	479.302593	956.590633	0.34154	0.0001637	-0.27627	-0.00013242	0.065272	3.1285E-05	479.30230009001855	44.489	0.45975	44.489	44.28	44.739	0					23	16	2	0	0	0	0.21905	1	9937	9937		23.148	0	1	389060			22858	678	12857	12858	29024	29024					0.11060101625491825
LGLRFSPTP	9	Unmodified	_LGLRFSPTP_					0	0	0		ENST00000290158.8_1_17:45761520-45761586:+|nuORF	ENST00000290158.8_1_17:45761520-45761586:+|nuORF	ENST00000290158.8_1_17:45761520-45761586:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7720031738281	2	494.284734	986.554916	0.12222	6.0409E-05	-0.042678	-2.1095E-05	0.079537	3.9314E-05	494.2845283782097	39.694	2.1994	39.694	38.377	40.576	0					238	79	5	0	0	0	0.25314	1	8282	8282		15.847	2.3393	1	5907100			22859	9149	12858	12859	29025	29025					0.06110064168478857
LGLRFSPTP	9	Unmodified	_LGLRFSPTP_					0	0	0		ENST00000290158.8_1_17:45761520-45761586:+|nuORF	ENST00000290158.8_1_17:45761520-45761586:+|nuORF	ENST00000290158.8_1_17:45761520-45761586:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2885437011719	2	494.284734	986.554916	0.40662	0.00020099	-0.295	-0.00014581	0.11162	5.5172E-05	494.28439601887044	39.642	2.0447	39.735	38.622	40.667	0.09267					219	73	5	0	0	0	0.25314	1	8275	8275		15.847	2.3393	1	5837900			22860	9149	12858	12859	29026	29026					0.06110064168478857
LGLRLEWPLPQ	11	Unmodified	_LGLRLEWPLPQ_					0	0	0			REV__ENSG00000172037|ENST00000305544|LAMB2	REV__ENSG00000172037|ENST00000305544|LAMB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2598876953125	3	441.259079	1320.75541	0.6516	0.00028752	1.5741	0.00069461	2.2257	0.00098213	441.2598471700877	56.048	0.59718	56.119	55.88	56.477	0.070889					44	21	3	0	0	0	0.4112	1	13432	13432		9.7643	1.0125	1	1413600	+		22861	17687	12859	12860	29027	29027					0.10785913765266741
LGLSIELQINL	11	Unmodified	_LGLSIELQINL_					0	0	0			REV__ENSG00000214681|ENST00000446461|IQCF5	REV__ENSG00000214681|ENST00000446461|IQCF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5717468261719	3	404.911456	1211.71254	-0.22304	-9.0311E-05	1.7401	0.0007046	1.5171	0.00061429	404.9121022270514	33.104	0.53064	33.16	32.891	33.421	0.055309					27	18	2	0	0	0	0.33182	1	6330	6330		5.4027	0	1	248280	+		22862	19062	12860	12861	29028	29028					0.11515098917220712
LGLSIVVKY	9	Unmodified	_LGLSIVVKY_					0	0	0			REV__ENST00000358007.7_1_12:12967074-12974210:+|nuORF	REV__ENST00000358007.7_1_12:12967074-12974210:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7497863769531	2	496.312961	990.611368	0.31973	0.00015869	-0.17156	-8.515E-05	0.14817	7.3538E-05	496.31275206473384	69.884	0.5623	69.884	69.647	70.209	0					45	20	3	0	0	0	0.23784	1	17629	17629		19.257	7.6167	1	335930	+		22863	20227	12861	12862	29029	29029					0.11568692005130288
LGLSIVVKY	9	Unmodified	_LGLSIVVKY_					0	0	0			REV__ENST00000358007.7_1_12:12967074-12974210:+|nuORF	REV__ENST00000358007.7_1_12:12967074-12974210:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.74981689453125	2	496.312961	990.611368	0.3248	0.0001612	-0.21001	-0.00010423	0.1148	5.6975E-05	496.3128197163751	69.88	0.60443	69.858	69.673	70.277	-0.022087					44	21	3	0	0	0	0.22061	1	17630	17630		24.021	8.1734	1	320440	+		22864	20227	12861	12862	29030	29030					0.11568692005130288
LGLSLCLLLP	10	Unmodified	_LGLSLCLLLP_					0	0	0			REV__ENST00000434423.4_1_7:72397419-72400491:+|nuORF	REV__ENST00000434423.4_1_7:72397419-72400491:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.9854736328125	2	521.322471	1040.63039	0.257	0.00013398	-2.6258	-0.0013689	-2.3688	-0.0012349	521.3212591552859	96.249	0.30682	96.326	96.159	96.466	0.077415					36	29	2	0	0	0	0.31165	1	25743	25743		10.824	3.5347	1	72360	+		22865	20984	12862	12863	29031	29031					0.11169905304564054
LGLSLCLLLP	10	Unmodified	_LGLSLCLLLP_					0	0	0			REV__ENST00000434423.4_1_7:72397419-72400491:+|nuORF	REV__ENST00000434423.4_1_7:72397419-72400491:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.9855346679688	2	521.322471	1040.63039	0.42966	0.00022399	-2.6968	-0.0014059	-2.2671	-0.0011819	521.3212321051025	96.266	0.27614	96.262	96.217	96.494	-0.0038147					35	27	2	0	0	0	0.3156	1	25797	25797		10.824	5.5933	1	89112	+		22866	20984	12862	12863	29032	29032					0.11169905304564054
LGLSPLRSL	9	Unmodified	_LGLSPLRSL_					0	0	0		ENST00000455565.5_2_17:43697992-43698448:+|nuORF	ENST00000455565.5_2_17:43697992-43698448:+|nuORF	ENST00000455565.5_2_17:43697992-43698448:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.810791015625	2	478.300384	954.586216	0.43959	0.00021026	0.20034	9.5825E-05	0.63993	0.00030608	478.300529957382	44.789	0.40887	44.789	44.552	44.961	0					25	14	2	0	0	0	0.11461	1	9984	9984		36.127	7.0454	1	343040			22867	10687	12863	12864	29033	29033					0.10710637202555517
LGLTHLIGSP	10	Unmodified	_LGLTHLIGSP_					0	0	0		nc|ENSG00000115761|Q9BSC4-4|NOL10;nc|ENSG00000115761|Q9BSC4-2|NOL10;ENSG00000115761|ENST00000381685|NOL10	nc|ENSG00000115761|Q9BSC4-4|NOL10	nc|ENSG00000115761|Q9BSC4-4|NOL10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.76556396484375	2	504.297842	1006.58113	0.27051	0.00013642	-0.51523	-0.00025983	-0.24472	-0.00012341	504.2974677365852	23.128	0.48646	23.083	22.898	23.385	-0.044867					31	17	2	0	0	0	0.31267	1	3366	3366		10.074	2.7847	1	49027			22868	12663	12864	12865	29034	29034					0.07810333339966746
LGLVGPWWSS	10	Unmodified	_LGLVGPWWSS_					0	0	0		ENST00000182527.3_1_6:52367444-52367987:-|nuORF	ENST00000182527.3_1_6:52367444-52367987:-|nuORF	ENST00000182527.3_1_6:52367444-52367987:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7827758789062	2	551.290017	1100.56548	0.35672	0.00019665	2.3407	0.0012904	2.6974	0.0014871	551.2919816362747	57.855	0.69339	57.855	57.634	58.328	0					37	24	2	0	0	0	0.2504	1	14072	14072		26.884	0	1	558920			22869	8792	12865	12866	29035	29035					0.019220468228922982
LGLVNPKQREF	11	Unmodified	_LGLVNPKQREF_					0	0	0		ENST00000254616.10_1_11:6503514-6503556:+|nuORF	ENST00000254616.10_1_11:6503514-6503556:+|nuORF	ENST00000254616.10_1_11:6503514-6503556:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8819274902344	3	434.250583	1299.72992	-0.15012	-6.5188E-05	-0.74052	-0.00032157	-0.89063	-0.00038676	434.2501528593001	24.588	0.78434	24.588	24.058	24.843	0					58	26	3	0	0	0	0.3325	1	3801	3801		4.1166	0.27072	1	145510			22870	8918	12866	12867	29036	29036					0.09204439242853368
LGLVRLQLCLW	11	Unmodified	_LGLVRLQLCLW_					0	0	0			REV__ENST00000598494.5_2_19:6466686-6467070:+|nuORF	REV__ENST00000598494.5_2_19:6466686-6467070:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.2229919433594	3	438.596926	1312.76895	-0.1588	-6.9649E-05	-1.559	-0.00068378	-1.7178	-0.00075342	438.59630259123014	18.106	0.40925	18.048	17.846	18.255	-0.058172					21	14	2	0	0	0	0.3333	1	1865	1865		1.3296	0	1	38873	+		22871	22618	12867	12868	29037	29037					0.12507448272845068
LGLVRLQLCLW	11	Unmodified	_LGLVRLQLCLW_					0	0	0			REV__ENST00000598494.5_2_19:6466686-6467070:+|nuORF	REV__ENST00000598494.5_2_19:6466686-6467070:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	438.596926	1312.76895	-0.031837	-1.3963E-05	-0.72115	-0.0003163	-0.75299	-0.00033026	438.59657855759633	17.85	0.36449	17.85	17.66	18.024	0	-0.10861	0.00058404	NaN	1.3296	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42117	+		22872	22618	12867	12868							0.12507448272845068
LGLVRLQLCLW	11	Unmodified	_LGLVRLQLCLW_					0	0	0			REV__ENST00000598494.5_2_19:6466686-6467070:+|nuORF	REV__ENST00000598494.5_2_19:6466686-6467070:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	438.596926	1312.76895	-0.13202	-5.7902E-05	-1.2616	-0.00055335	-1.3937	-0.00061125	438.59657771297503	18.096	0.33382	17.978	17.784	18.117	-0.11739	0.019441	-0.00012714	NaN	1.3296	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49536	+		22873	22618	12867	12868							0.12507448272845068
LGLVVHLPF	9	Unmodified	_LGLVVHLPF_					0	0	0		ENST00000600988.1_1_19:36249429-36249696:+|nuORF	ENST00000600988.1_1_19:36249429-36249696:+|nuORF	ENST00000600988.1_1_19:36249429-36249696:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.8079833984375	2	497.807845	993.601138	0.44466	0.00022135	0.081059	4.0352E-05	0.52572	0.00026171	497.80796070827165	71.616	0.92316	71.616	71.292	72.215	0					41	32	2	0	0	0	0.16905	1	18214	18214		28.173	7.302	1	349480			22874	12253	12868	12869	29038	29038					0.1040812907056079
LGLVVHLPF	9	Unmodified	_LGLVVHLPF_					0	0	0		ENST00000600988.1_1_19:36249429-36249696:+|nuORF	ENST00000600988.1_1_19:36249429-36249696:+|nuORF	ENST00000600988.1_1_19:36249429-36249696:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.80810546875	2	497.807845	993.601138	0.44635	0.0002222	-0.16621	-8.274E-05	0.28014	0.00013946	497.80783262369994	71.625	0.88808	71.597	71.368	72.256	-0.027267					42	31	2	0	0	0	0.11229	1	18227	18227		36.466	10.125	1	410240			22875	12253	12868	12869	29039	29039					0.1040812907056079
LGLVVHLPF	9	Unmodified	_LGLVVHLPF_					0	0	0		ENST00000600988.1_1_19:36249429-36249696:+|nuORF	ENST00000600988.1_1_19:36249429-36249696:+|nuORF	ENST00000600988.1_1_19:36249429-36249696:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.807845	993.601138	0.39359	0.00019593	-0.18354	-9.1369E-05	0.21005	0.00010456	497.80775017997496	71.539	0.63052	71.595	71.402	72.033	0.056572	-0.0074934	-9.1069E-05	NaN	36.466	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291790			22876	12253	12868	12869							0.1040812907056079
LGMLPLASPPR	11	Unmodified	_LGMLPLASPPR_					0	0	0			REV__ENST00000537641.5_1_11:61183575-61183878:-|nuORF	REV__ENST00000537641.5_1_11:61183575-61183878:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.354248046875	2	576.333901	1150.65325	0.26849	0.00015474	0.28037	0.00016158	0.54885	0.00031632	576.3340202930528	38.305	0.27373	38.403	38.294	38.568	0.097527					18	9	3	0	0	0	0.32855	1	7964	7964		10.8	6.4703	1	137090	+		22877	16474	12869	12870	29040	29040					0.08394924422009353
LGMMCKYIS	9	Unmodified	_LGMMCKYIS_					0	0	0		ENST00000535903.1_1_12:10163358-10165517:+|nuORF	ENST00000535903.1_1_12:10163358-10165517:+|nuORF	ENST00000535903.1_1_12:10163358-10165517:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3057861328125	2	523.247591	1044.48063	0.62292	0.00032594	0.79108	0.00041393	1.414	0.00073987	523.2488506025454	66.447	0.3894	66.447	66.183	66.573	0					17	13	2	0	0	0	0.24913	1	16582	16582		7.9102	0	1	119230			22878	11678	12870	12871	29041	29041					-0.03983106301211592
LGMPFRFMEQ	10	Unmodified	_LGMPFRFMEQ_					0	0	0			REV__ENSG00000120332|ENST00000239462|TNN	REV__ENSG00000120332|ENST00000239462|TNN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.2037658691406	3	419.203588	1254.58893	0.69278	0.00029042	-1.0084	-0.00042271	-0.31558	-0.00013229	419.20331432200487	56.226	1.2777	56.207	55.696	56.973	-0.019077					132	46	5	0	0	0	0.29978	1	13521	13521		12.873	2.5574	1	10230000	+		22879	15082	12871	12872	29042	29042					-0.02817598726437609
LGMPFRFMEQ	10	Unmodified	_LGMPFRFMEQ_					0	0	0			REV__ENSG00000120332|ENST00000239462|TNN	REV__ENSG00000120332|ENST00000239462|TNN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	419.203588	1254.58893	0.62116	0.00026039	-0.81282	-0.00034074	-0.19166	-8.0344E-05	419.20328645085715	56.029	1.119	56.1	55.675	56.794	0.070885	-0.030461	5.5118E-05	NaN	12.873	114	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8367100	+		22880	15082	12871	12872							-0.02817598726437609
LGMPFRFMEQ	10	Unmodified	_LGMPFRFMEQ_					0	0	0			REV__ENSG00000120332|ENST00000239462|TNN	REV__ENSG00000120332|ENST00000239462|TNN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	419.203588	1254.58893	0.69278	0.00029042	-1.0084	-0.00042271	-0.31558	-0.00013229	419.20331432200487	56.226	1.2777	56.207	55.696	56.973	-0.019077	0.076335	-0.0001908	NaN	12.873	132	46	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10230000	+		22881	15082	12871	12872							-0.02817598726437609
LGMRLPLPF	9	Unmodified	_LGMRLPLPF_					0	0	0		nc|ENSG00000178821|Q8NDY8-2|TMEM52;ENSG00000178821|ENST00000310991|TMEM52	nc|ENSG00000178821|Q8NDY8-2|TMEM52	nc|ENSG00000178821|Q8NDY8-2|TMEM52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.283447265625	2	522.307155	1042.59976	0.6696	0.00034974	-3.5596	-0.0018592	-2.89	-0.0015095	523.3071751990857	54.547	0.51326	54.531	54.251	54.765	-0.015923					31	17	3	0	0	0	0.23147	1	12976	12976		19.439	3.6708	1	286920			22882	12861	12872	12873	29043	29043					0.08016171710141862
LGNFLLPKESI	11	Unmodified	_LGNFLLPKESI_					0	0	0			REV__nc|ENSG00000140280|Q8IV50-2|LYSMD2	REV__nc|ENSG00000140280|Q8IV50-2|LYSMD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.55230712890625	3	410.907934	1229.70197	0.26422	0.00010857	-3.419	-0.0014049	-3.1548	-0.0012963	411.2399217224756	44.653	0.4077	44.728	44.475	44.883	0.075047					19	14	2	0	0	0	0.33025	1	9865	9865		6.2344	0.042509	1	260190	+		22883	16025	12873	12874	29044	29044					0.09631116262767137
LGNFLLPKESI	11	Unmodified	_LGNFLLPKESI_					0	0	0			REV__nc|ENSG00000140280|Q8IV50-2|LYSMD2	REV__nc|ENSG00000140280|Q8IV50-2|LYSMD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	410.907934	1229.70197	0.1965	8.0745E-05	-0.10483	-4.3074E-05	0.091676	3.7671E-05	411.24221245218644	44.641	0.33136	44.641	44.408	44.739	0	-0.043454	0.0014371	NaN	6.2344	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108640	+		22884	16025	12873	12874							0.09631116262767137
LGNQHIYQRSS	11	Unmodified	_LGNQHIYQRSS_					0	0	0		ENSG00000155890|ENST00000286349|TRIM42	ENSG00000155890|ENST00000286349|TRIM42	ENSG00000155890|ENST00000286349|TRIM42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8822021484375	3	434.889825	1301.64765	-0.19288	-8.388E-05	-0.0085943	-3.7376E-06	-0.20147	-8.7618E-05	434.8898562382028	24.086	0.78507	24.086	23.669	24.454	0					54	26	3	0	0	0	0.33303	1	3527	3527		2.4348	0.52841	1	83350			22885	5200	12874	12875	29045	29045					0.008889171639111737
LGPAAERRWVL	11	Unmodified	_LGPAAERRWVL_					0	0	0			REV__ENST00000378839.1_2_10:13141209-13141558:-|nuORF	REV__ENST00000378839.1_2_10:13141209-13141558:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.88165283203125	3	423.247173	1266.71969	-0.20376	-8.624E-05	0.39726	0.00016814	0.1935	8.1899E-05	423.2473979098382	39.393	0.38417	39.486	39.251	39.635	0.09267					16	13	2	0	0	0	0.3299	1	8335	8335		9.7643	0	1	145110	+		22886	20521	12875	12876	29046	29046					0.0969987630826381
LGPARFVPT	9	Unmodified	_LGPARFVPT_					0	0	0			REV__nc|ENSG00000004399|Q9Y4D7-2|PLXND1	REV__nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.32080078125	2	479.279452	956.544351	0.35641	0.00017082	-0.02992	-1.434E-05	0.32649	0.00015648	479.27929201107816	53.661	0.18562	53.651	53.585	53.771	-0.0096054					8	6	2	0	0	0	0.1939	1	12683	12683		30.637	14.789	1	196000	+		22887	13329	12876	12877	29047	29047					0.0643408151404401
LGPERREK	8	Unmodified	_LGPERREK_					0	0	0			REV__ENST00000568570.1_1_16:31993258-32005419:+|nuORF	REV__ENST00000568570.1_1_16:31993258-32005419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.29315185546875	2	492.78289	983.551228	0.1868	9.205E-05	-0.6582	-0.00032435	-0.4714	-0.0002323	492.78231047999805	19.164	0.54859	19.108	18.903	19.452	-0.055693					31	18	3	0	0	0	0.44389	1	2195	2195		7.9102	0	1	56898	+		22888	22397	12877	12878	29048	29048					0.05879394394617066
LGPKSKVL	8	Unmodified	_LGPKSKVL_					0	0	0		ENST00000509039.5_1_4:2877642-2901297:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1	ENST00000509039.5_1_4:2877642-2901297:+|nuORF	ENST00000509039.5_1_4:2877642-2901297:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5350341796875	2	421.278921	840.543289	-0.32426	-0.00013661	1.204	0.00050721	0.87972	0.00037061	421.2793309313004	27.656	0.54062	27.656	27.441	27.981	0					26	18	2	0	0	0	0.3439	1	4678	4678		2.8892	0	1	72354			22889	1302	12878	12879	29049	29049					0.11663867145136919
LGPLAAPEPK	10	Unmodified	_LGPLAAPEPK_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.79156494140625	2	496.792392	991.570232	0.37825	0.00018791	-1.6823	-0.00083574	-1.304	-0.00064783	496.79177615976863	17.223	0.6469	17.223	16.981	17.628	0					37	22	2	0	0	0	0.39009	1	1557	1557		5.2969	0	1	87724	+		22890	15386	12879	12880	29050	29050					0.0741093096565919
LGPLHPSFNL	10	Unmodified	_LGPLHPSFNL_					0	0	0		ENSG00000177666|ENST00000336615|PNPLA2;ENST00000525250.5_1_11:821680-823850:+|nuORF	ENSG00000177666|ENST00000336615|PNPLA2;ENST00000525250.5_1_11:821680-823850:+|nuORF	ENSG00000177666|ENST00000336615|PNPLA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7935180664062	2	547.803291	1093.59203	0.71697	0.00039276	3.5985	0.0019712	4.3154	0.002364	547.8032729032841	47.245	0.44347	47.245	47.024	47.468	0					53	15	4	0	0	0	0.30958	1	10663	10663		19.257	3.4098	1	885250			22891	7005;11535	12880	12881	29051	29051					0.04897735714234841
LGPLQASVEPL	11	Unmodified	_LGPLQASVEPL_					0	0	0			REV__ENST00000253110.15_3_19:10202002-10202836:+|nuORF	REV__ENST00000253110.15_3_19:10202002-10202836:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3229370117188	2	562.321514	1122.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.755	1	98.806	98.306	99.306	0.050888								0	0	0	0.36685	1	26436	26436		4.5289	0.58447	1		+		22892	19536	12881	12882	29052	29052					0.07206567820276177
LGPRKTRTV	9	Unmodified	_LGPRKTRTV_					0	0	0			REV__nc|ENSG00000122008|Q9UBT6-3|POLK	REV__nc|ENSG00000122008|Q9UBT6-3|POLK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.26416015625	2	514.322183	1026.62981	-1.1372	-0.0005849	0.058385	3.0029E-05	-1.0788	-0.00055487	514.3220891941471	34.792	0.58814	34.792	34.556	35.144	0					40	20	3	0	0	0	0.25622	1	6830	6830		7.2892	0	1	428750	+		22893	15142	12882	12883	29053	29053					0.11756246699701478
LGPRRIPPA	9	Unmodified	_LGPRRIPPA_					0	0	0		ENST00000452809.1_1_1:155531991-155533104:+|nuORF	ENST00000452809.1_1_1:155531991-155533104:+|nuORF	ENST00000452809.1_1_1:155531991-155533104:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.25897216796875	2	488.806168	975.597784	0.3527	0.0001724	-1.3786	-0.00067385	-1.0259	-0.00050145	488.80531472480317	16.872	0.32535	16.81	16.617	16.943	-0.062534					14	11	2	0	0	0	0.25811	1	1405	1405		5.2307	0	1	47128			22894	10662	12883	12884	29054	29054					0.1090087901654897
LGPWLRALG	9	Unmodified	_LGPWLRALG_					0	0	0		ENSG00000188305|ENST00000342063|PEAK3	ENSG00000188305|ENST00000342063|PEAK3	ENSG00000188305|ENST00000342063|PEAK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.7953796386719	2	491.795269	981.575986	0.50681	0.00024925	-0.070514	-3.4679E-05	0.4363	0.00021457	491.7950751550695	41.414	1.4084	41.511	41.259	42.668	0.096626					104	53	3	0	0	0	0.30166	1	8934	8934		8.5933	0	1	20710000			22895	7742	12884	12885	29055	29055					0.08446074267988024
LGPWPLTR	8	Unmodified	_LGPWPLTR_					0	0	0		ENST00000534481.1_1_11:46722838-46724291:+|nuORF;ENST00000531866.1_1_11:46722979-46723237:+|nuORF;ENST00000311764.2_1_11:46722587-46724291:+|nuORF	ENST00000534481.1_1_11:46722838-46724291:+|nuORF	ENST00000534481.1_1_11:46722838-46724291:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.3083190917969	2	470.27417	938.533787	-0.069389	-3.2632E-05	-4.1058	-0.0019308	-4.1751	-0.0019635	470.27273818022485	15.754	0.35345	15.644	15.517	15.871	-0.10981					23	11	3	0	0	0	0.3439	1	1122	1122		2.8892	0	1	29313			22896	11659	12885	12886	29056	29056					0.06206098859593112
LGPYVSRLA	9	Unmodified	_LGPYVSRLA_					0	0	0		ENST00000409245.5_1_2:47143338-47143563:+|nuORF	ENST00000409245.5_1_2:47143338-47143563:+|nuORF	ENST00000409245.5_1_2:47143338-47143563:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2847595214844	2	488.284734	974.554916	0.53998	0.00026366	0.79167	0.00038656	1.3317	0.00065022	488.28533630941877	55.52	0.99411	55.591	55.245	56.239	0.070889					100	36	4	0	0	0	0.068501	1	13253	13253		46.021	0	1	6980800			22897	10243	12886	12887	29057	29057					0.0666206416847217
LGQEEPAK	8	Unmodified	_LGQEEPAK_					0	0	0			REV__AFAP1L2|p.L204Cfs*15|1|0.31|ENSG00000169129|chr10:114315563-114315563|A/-|frameshift_variant	REV__AFAP1L2|p.L204Cfs*15|1|0.31|ENSG00000169129|chr10:114315563-114315563|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.24737548828125	2	436.229625	870.444697	-0.44014	-0.000192	0.74237	0.00032384	0.30222	0.00013184	436.22989492242203	34.319	0.36474	34.386	34.268	34.633	0.066704					21	12	2	0	0	0	0.34185	1	6811	6811		5.7604	0	1	67607	+		22898	13088	12887	12888	29058	29058					0.004292191094236841
LGQKDLEA	8	Unmodified	_LGQKDLEA_					0	0	0		ENSG00000169258|ENST00000303991|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2370300292969	2	437.23745	872.460347	0.26747	0.00011695	1.0282	0.00044957	1.2957	0.00056652	437.23748612630106	77.341	0.94145	77.396	76.953	77.895	0.05542					91	33	5	0	0	0	0.34294	1	19969	19969		3.9444	0	1	591570			22899	6345	12888	12889	29059	29059					0.019015056264720442
LGQKQKRR	8	Unmodified	_LGQKQKRR_					0	0	0		ENST00000543310.5_1_12:133617958-133618057:+|nuORF	ENST00000543310.5_1_12:133617958-133618057:+|nuORF	ENST00000543310.5_1_12:133617958-133618057:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2900390625	2	507.319974	1012.6254	0.49757	0.00025243	-1.0426	-0.00052894	-0.54504	-0.00027651	507.8213806813671	37.125	0.75874	37.218	36.713	37.472	0.093014					55	27	4	0	0	0	0.34092	1	7631	7631		4.756	0	1	673650			22900	11742	12889	12890	29060	29060					0.1195878227679259
LGQLHQEEE	9	Unmodified	_LGQLHQEEE_					0	0	0			REV__nc|ENSG00000112130|O76064-3|RNF8	REV__nc|ENSG00000112130|O76064-3|RNF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.760009765625	2	541.759278	1081.504	0.28353	0.00015361	0.47417	0.00025688	0.7577	0.00041049	541.7597122863192	27.509	0.5563	27.509	27.207	27.763	0					30	18	2	0	0	0	0.28128	1	4661	4661		11.64	1.5664	1	125470	+		22901	14754	12890	12891	29061	29061					-0.033489296670495605
LGQLHQEEE	9	Unmodified	_LGQLHQEEE_					0	0	0			REV__nc|ENSG00000112130|O76064-3|RNF8	REV__nc|ENSG00000112130|O76064-3|RNF8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.759278	1081.504	0.28353	0.00015361	0.47417	0.00025688	0.7577	0.00041049	541.7597122863192	27.509	0.5563	27.509	27.207	27.763	0	0.031743	3.0045E-05	NaN	11.64	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125470	+		22902	14754	12890	12891							-0.033489296670495605
LGQLHQEEE	9	Unmodified	_LGQLHQEEE_					0	0	0			REV__nc|ENSG00000112130|O76064-3|RNF8	REV__nc|ENSG00000112130|O76064-3|RNF8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.759278	1081.504	0.2915	0.00015792	0.44794	0.00024267	0.73944	0.0004006	541.7596515705545	27.512	0.48993	27.501	27.213	27.703	-0.01156	0.023169	1.6261E-06	NaN	11.64	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132230	+		22903	14754	12890	12891							-0.033489296670495605
LGQLRAPSL	9	Unmodified	_LGQLRAPSL_					0	0	0			REV__ENST00000474787.1_1_9:139976989-139977178:+|nuORF	REV__ENST00000474787.1_1_9:139976989-139977178:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7777099609375	2	477.790184	953.565815	0.26288	0.0001256	-0.95368	-0.00045566	-0.6908	-0.00033006	477.7897150320363	20.665	0.51704	20.665	20.395	20.912	0					27	17	2	0	0	0	0.30623	1	2542	2542		7.9102	0	1	57007	+		22904	21399	12891	12892	29062	29062					0.08717466542748298
LGQLRAPSL	9	Unmodified	_LGQLRAPSL_					0	0	0			REV__ENST00000474787.1_1_9:139976989-139977178:+|nuORF	REV__ENST00000474787.1_1_9:139976989-139977178:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	477.790184	953.565815	0.26288	0.0001256	-0.95368	-0.00045566	-0.6908	-0.00033006	477.7897150320363	20.665	0.51704	20.665	20.395	20.912	0	-0.053619	-0.00014584	NaN	7.9102	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57007	+		22905	21399	12891	12892							0.08717466542748298
LGQQLKTTR	9	Unmodified	_LGQQLKTTR_					0	0	0		ENST00000375911.1_1_6:31628179-31628221:-|nuORF	ENST00000375911.1_1_6:31628179-31628221:-|nuORF	ENST00000375911.1_1_6:31628179-31628221:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8110961914062	2	522.811648	1043.60874	0.14162	7.4039E-05	-0.53608	-0.00028027	-0.39447	-0.00020623	522.8111816985784	12.356	0.46541	12.259	12.148	12.614	-0.096607					24	15	3	0	0	0	0.25988	1	114	114		3.9444	1.6417	1	78179			22906	9917	12892	12893	29063	29063					0.08868236600164892
LGQQPGLSKG	10	Unmodified	_LGQQPGLSKG_					0	0	0		ENST00000488426.5_1_6:31926355-31926604:-|nuORF	ENST00000488426.5_1_6:31926355-31926604:-|nuORF	ENST00000488426.5_1_6:31926355-31926604:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.30908203125	2	492.777274	983.539994	0.22983	0.00011325	-0.11838	-5.8333E-05	0.11145	5.4921E-05	492.77725649744576	25.943	0.5208	25.92	25.691	26.212	-0.022236					27	18	2	0	0	0	0.32072	1	4178	4178		2.9952	2.9952	1	118810			22907	11135	12893	12894	29064	29064					0.047565723004936444
LGQSPLRPL	9	Unmodified	_LGQSPLRPL_					0	0	0			REV__ENST00000313050.11_1_9:139342041-139342092:-|nuORF	REV__ENST00000313050.11_1_9:139342041-139342092:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.8342590332031	2	490.798009	979.581465	0.36037	0.00017687	-1.6425	-0.00080612	-1.2821	-0.00062925	490.7981426673418	40.158	0.61166	40.158	39.914	40.526	0					38	21	3	0	0	0	0.20167	1	8540	8540		29.082	0	1	214240	+		22908	19914	12894	12895	29065	29065					0.09085753059787294
LGQSPLRPL	9	Unmodified	_LGQSPLRPL_					0	0	0			REV__ENST00000313050.11_1_9:139342041-139342092:-|nuORF	REV__ENST00000313050.11_1_9:139342041-139342092:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.834228515625	2	490.798009	979.581465	0.55864	0.00027418	-0.33979	-0.00016677	0.21885	0.00010741	490.79785126707066	40.082	0.64901	40.175	39.72	40.369	0.09267					28	22	2	0	0	0	0.1854	1	8543	8543		32.305	1.6689	1	174820	+		22909	19914	12894	12895	29066	29066					0.09085753059787294
LGQSPLRPL	9	Unmodified	_LGQSPLRPL_					0	0	0			REV__ENST00000313050.11_1_9:139342041-139342092:-|nuORF	REV__ENST00000313050.11_1_9:139342041-139342092:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	490.798009	979.581465	0.42001	0.00020614	-0.14137	-6.9383E-05	0.27864	0.00013676	490.7979930080914	40.053	0.44611	40.153	39.922	40.368	0.099407	-0.0089684	0.00011533	NaN	25.399	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286940	+		22910	19914	12894	12895							0.09085753059787294
LGQTDSKL	8	Unmodified	_LGQTDSKL_					0	0	0			REV__ENST00000301073.3_1_19:56111763-56113741:+|nuORF	REV__ENST00000301073.3_1_19:56111763-56113741:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.57000732421875	2	431.23745	860.460347	-0.10936	-4.716E-05	-0.67083	-0.00028929	-0.78019	-0.00033645	431.23709260637617	26.877	0.31233	26.855	26.788	27.1	-0.021412					14	10	2	0	0	0	0.34218	1	4469	4469		5.2307	0.47466	1	56680	+		22911	19817	12895	12896	29067	29067					0.024535056264767263
LGQTHLALMNF	11	Unmodified	_LGQTHLALMNF_					0	0	0		ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENSG00000004897|ENST00000066544|CDC27	ENSG00000004897|ENST00000066544|CDC27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.1828918457031	3	415.553386	1243.63833	-0.062136	-2.5821E-05	-3.8027	-0.0015802	-3.8649	-0.0016061	415.55243575273914	24.919	0.22052	24.919	24.79	25.011	0					12	7	2	0	0	0	0.33064	1	3916	3916		7.9454	0.84368	1	39792			22912	319	12896	12897	29068	29068					0.026254325540094214
LGQYFRYSGSL	11	Unmodified	_LGQYFRYSGSL_					0	0	0		CA14|p.N213S|1|0.31|ENSG00000118298|chr1:150263117-150263117|A/G|missense_variant	CA14|p.N213S|1|0.31|ENSG00000118298|chr1:150263117-150263117|A/G|missense_variant	CA14|p.N213S|1|0.31|ENSG00000118298|chr1:150263117-150263117|A/G|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.88824462890625	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.21	1	27.189	26.689	27.689	-0.021412								0	0	0	0.35922	1	4590	4590		2.8433	0	1				22913	84	12897	12898	29069	29069					0.0072018456346540916
LGQYVIPVQGF	11	Unmodified	_LGQYVIPVQGF_					0	0	0			REV__ENST00000586523.1_1_18:43665917-43666256:-|nuORF	REV__ENST00000586523.1_1_18:43665917-43666256:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.9065856933594	3	407.560646	1219.66011	-0.2911	-0.00011864	0.48498	0.00019766	0.19388	7.9017E-05	407.56079725595924	12.387	0.51998	12.291	12.094	12.614	-0.096607					22	17	2	0	0	0	0.33346	1	108	108		0.50596	0	1	10379	+		22914	22519	12898	12899	29070	29070					0.05906560574226205
LGRAAVDTCL	10	Unmodified	_LGRAAVDTCL_					0	0	0			REV__ENST00000461443.1_1_2:118582593-118583205:+|nuORF	REV__ENST00000461443.1_1_2:118582593-118583205:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.771484375	2	509.771134	1017.52771	0.8665	0.00044172	0.090795	4.6285E-05	0.9573	0.000488	509.7710965564077	55.884	1.5772	55.884	55.539	57.116	0					125	57	5	0	0	0	0.18562	2	13374	13325;13374		34.402	27.629	1	11472000	+		22915	14001	12899	12900	29071;29072	29072					0.019652125657671604
LGRAESEEQA	10	Unmodified	_LGRAESEEQA_					0	0	0			REV__ENSG00000176399|ENST00000325870|DMRTA1	REV__ENSG00000176399|ENST00000325870|DMRTA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.311767578125	2	545.262185	1088.50982	0.40965	0.00022337	-0.04092	-2.2312E-05	0.36873	0.00020106	545.2622026447827	15.826	0.25392	15.762	15.636	15.89	-0.064413					11	8	2	0	0	0	0.32101	1	1129	1129		2.4985	0.65425	1	23575	+		22916	17934	12900	12901	29073	29073					-0.030898311553755775
LGRALRPL	8	Unmodified	_LGRALRPL_					0	0	0		ENST00000504033.5_1_19:54040827-54040965:+|nuORF	ENST00000504033.5_1_19:54040827-54040965:+|nuORF	ENST00000504033.5_1_19:54040827-54040965:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.8487548828125	2	448.295436	894.57632	0.38611	0.00017309	-0.6453	-0.00028928	-0.25918	-0.00011619	448.29509101387833	29.677	0.36661	29.677	29.551	29.917	0					19	12	2	0	0	0	0.34046	1	5343	5343		14.582	0	1	87679			22917	11297	12901	12902	29074	29074					0.12481493987820613
LGRALWAASRF	11	Unmodified	_LGRALWAASRF_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.1827697753906	3	416.571768	1246.69348	-0.03892	-1.6213E-05	1.7741	0.00073904	1.7352	0.00072283	416.5726049695559	25.373	0.43152	25.317	25.134	25.565	-0.055931					19	14	2	0	0	0	0.33287	1	4071	4071		2.8433	0	1	29125			22918	8103	12902	12903	29075	29075					0.07999607136753184
LGRANAGVSL	10	Unmodified	_LGRANAGVSL_					0	0	0		ENST00000453270.2_1_15:96876514-96876646:+|nuORF	ENST00000453270.2_1_15:96876514-96876646:+|nuORF	ENST00000453270.2_1_15:96876514-96876646:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.27740478515625	2	479.277441	956.540328	-0.028336	-1.3581E-05	0.15015	7.1964E-05	0.12181	5.8383E-05	479.2774298233509	23.284	0.73789	23.284	22.996	23.734	0					58	25	3	0	0	0	0.22916	1	3430	3430		29.082	2.1979	1	606260			22919	10668	12903	12904	29076	29076					0.06031992020314192
LGRANAGVSL	10	Unmodified	_LGRANAGVSL_					0	0	0		ENST00000453270.2_1_15:96876514-96876646:+|nuORF	ENST00000453270.2_1_15:96876514-96876646:+|nuORF	ENST00000453270.2_1_15:96876514-96876646:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.27728271484375	2	479.277441	956.540328	0.097396	4.668E-05	-0.15058	-7.2169E-05	-0.053184	-2.549E-05	479.27730472220685	23.379	0.74822	23.292	22.993	23.741	-0.08761					63	26	3	0	0	0	0.22916	2	3464	3415;3464		29.082	0	1	604550			22920	10668	12903	12904	29077;29078	29078					0.06031992020314192
LGRANAGVSL	10	Unmodified	_LGRANAGVSL_					0	0	0		ENST00000453270.2_1_15:96876514-96876646:+|nuORF	ENST00000453270.2_1_15:96876514-96876646:+|nuORF	ENST00000453270.2_1_15:96876514-96876646:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.27728271484375	2	479.277441	956.540328	0.26501	0.00012701	-0.26873	-0.0001288	-0.0037262	-1.7859E-06	479.27720587740777	23.394	0.72764	23.349	23.06	23.787	-0.044867					64	25	4	0	0	0	0.22916	1	3426	3426		29.082	0	1	578500			22921	10668	12903	12904	29079	29079					0.06031992020314192
LGRANAGVSL	10	Unmodified	_LGRANAGVSL_					0	0	0		ENST00000453270.2_1_15:96876514-96876646:+|nuORF	ENST00000453270.2_1_15:96876514-96876646:+|nuORF	ENST00000453270.2_1_15:96876514-96876646:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.277441	956.540328	0.097396	4.668E-05	-0.15058	-7.2169E-05	-0.053184	-2.549E-05	479.27730472220685	23.379	0.74822	23.292	22.993	23.741	-0.08761	-0.016552	-5.1345E-05	NaN	29.082	63	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	604550			22922	10668	12903	12904							0.06031992020314192
LGRAQELLL	9	Unmodified	_LGRAQELLL_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8112487792969	2	506.811116	1011.60768	0.45887	0.00023256	-0.00055515	-2.8136E-07	0.45832	0.00023228	506.811052547141	53.402	1.1247	53.402	53.09	54.214	0					115	41	6	0	0	0	0.044952	1	12629	12629		54.774	1.3695	1	4924200			22923	2862	12904	12905	29080	29080					0.10234022231293238
LGRDQVPK	8	Unmodified	_LGRDQVPK_					0	0	0			REV__ENST00000526714.5_1_11:870485-904855:-|nuORF	REV__ENST00000526714.5_1_11:870485-904855:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.30133056640625	2	456.766709	911.518865	-0.23404	-0.0001069	0.014989	6.8465E-06	-0.21905	-0.00010005	456.7667104308988	28.186	0.7752	28.186	27.924	28.699	0					31	26	2	0	0	0	0.34218	1	4994	4994		9.3474	9.3474	1	159120	+		22924	18005	12905	12906	29081	29081					0.05956606991605895
LGRFITVMKF	10	Unmodified	_LGRFITVMKF_					0	0	0		BMS1|p.K484Ifs*79|1|0.03|ENSG00000165733|chr10:42796694-42796695|-/TT|frameshift_variant;BMS1|p.F897Lfs*30|1|0.22|ENSG00000165733|chr10:42820344-42820344|T/-|frameshift_variant;ENSG00000165733|ENST00000374518|BMS1	BMS1|p.K484Ifs*79|1|0.03|ENSG00000165733|chr10:42796694-42796695|-/TT|frameshift_variant	BMS1|p.K484Ifs*79|1|0.03|ENSG00000165733|chr10:42796694-42796695|-/TT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.5697021484375	3	404.570488	1210.68964	-0.099461	-4.0239E-05	-1.0655	-0.00043108	-1.165	-0.00047132	404.5700248575224	23.45	0.53799	23.406	23.138	23.676	-0.044062					47	18	3	0	0	0	0.36786	1	3431	3431		5.4027	0.35519	1	153040			22925	78	12906	12907	29082	29082					0.09271801318686812
LGRGRRLAPQ	10	Unmodified	_LGRGRRLAPQ_					0	0	0			REV__nc|ENSG00000161955|O75888-5|TNFSF13	REV__nc|ENSG00000161955|O75888-5|TNFSF13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3623657226562	2	562.343981	1122.67341	0.24962	0.00014037	-0.34901	-0.00019626	-0.099388	-5.589E-05	562.3435701038474	97.966	0.4037	97.959	97.714	98.117	-0.0068283					52	43	2	0	0	0	0.38233	1	26263	26263		6.7232	0	1	123600	+		22926	16957	12907	12908	29083	29083					0.11697856196815337
LGRGRRLAPQ	10	Unmodified	_LGRGRRLAPQ_					0	0	0			REV__nc|ENSG00000161955|O75888-5|TNFSF13	REV__nc|ENSG00000161955|O75888-5|TNFSF13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3621826171875	2	562.343981	1122.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.182	1	98.176	97.676	98.676	-0.0068283								0	0	0	0.36922	1	26299	26299		6.7232	0	1		+		22927	16957	12907	12908	29084	29084					0.11697856196815337
LGRHLPCIS	9	Unmodified	_LGRHLPCIS_					0	0	0		nc|ENSG998|Q9N2K0|HERV-H-ENH1	nc|ENSG998|Q9N2K0|HERV-H-ENH1	nc|ENSG998|Q9N2K0|HERV-H-ENH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.8320617675781	2	498.276386	994.53822	0.51883	0.00025852	-3.3157	-0.0016521	-2.7969	-0.0013936	498.2737026617816	37.901	0.32429	37.901	37.767	38.092	0					26	11	3	0	0	0	0.24913	1	7881	7881		4.3292	0.38484	1	152310			22928	13025	12908	12909	29085	29085					0.04073240010859536
LGRHRDLVDED	11	Unmodified	_LGRHRDLVDED_					0	0	0		ENST00000510852.1_1_4:120188537-120193190:+|nuORF;ENSG00000145390|ENST00000692078|USP53	ENST00000510852.1_1_4:120188537-120193190:+|nuORF	ENST00000510852.1_1_4:120188537-120193190:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.71820068359375	3	442.224985	1323.65313	0.34373	0.00015201	-1.0744	-0.00047514	-0.7307	-0.00032313	442.2245745984013	20.464	0.59212	20.354	20.074	20.666	-0.11003					28	21	2	0	0	0	0.3322	1	2563	2563		4.7159	0.59929	1	97004			22929	4647	12909	12910	29086	29086					0.004245959557010792
LGRKQPQLT	9	Unmodified	_LGRKQPQLT_					0	0	0			REV__ENSG00000243156|ENST00000441493|MICAL3	REV__ENSG00000243156|ENST00000441493|MICAL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2103881835938	2	520.81419	1039.61383	0.31181	0.0001624	2.8306	0.0014742	3.1424	0.0016366	520.8154311408725	23.096	0.27377	23.051	22.951	23.225	-0.044867					13	9	2	0	0	0	0.25202	1	3359	3359		10.824	2.9138	1	43018	+		22930	19191	12910	12911	29087	29087					0.09560540462780409
LGRLQALV	8	Unmodified	_LGRLQALV_					0	0	0			REV__nc|ENSG00000038358|Q6P2E9-2|EDC4	REV__nc|ENSG00000038358|Q6P2E9-2|EDC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8822021484375	2	435.281995	868.549437	-0.23022	-0.00010021	0.076655	3.3366E-05	-0.15356	-6.6843E-05	435.2819975105356	23.671	0.55435	23.671	23.419	23.973	0					31	18	3	0	0	0	0.34092	1	3527	3527		13.508	0.97634	1	93156	+		22931	13515	12911	12912	29088	29088					0.10990385376658196
LGRLRPKKHL	10	Unmodified	_LGRLRPKKHL_					0	0	0		AluSz_dup67285|chr12:52101141-52101425:+|1.2550882978443627|0.292536650614722|2.1|526.0|3|1|sense	AluSz_dup67285|chr12:52101141-52101425:+|1.2550882978443627|0.292536650614722|2.1|526.0|3|1|sense	AluSz_dup67285|chr12:52101141-52101425:+|1.2550882978443627|0.292536650614722|2.1|526.0|3|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.78521728515625	3	406.603291	1216.78804	-0.21571	-8.7709E-05	3.1395	0.0012765	2.9238	0.0011888	406.6048886758584	26.286	0.13519	26.286	26.161	26.296	0					6	4	2	0	0	0	0.32122	1	4283	4283		0	0	1	24558			22932	39	12912	12913	29089	29089					0.18832165678782076
LGRNFKMDRD	10	Unmodified	_LGRNFKMDRD_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.578369140625	3	417.880273	1250.61899	0.011709	4.8928E-06	2.3807	0.00099486	2.3924	0.00099975	417.88112731315044	23.402	0.32078	23.315	23.138	23.459	-0.087608					16	11	2	0	0	0	0.31994	1	3450	3450		3.0723	0.63748	1	31505			22933	6334	12913	12914	29090	29090					0.003704762631059566
LGRNLPLN	8	Unmodified	_LGRNLPLN_					0	0	0			REV__ENST00000443945.6_1_13:47127426-47279607:+|nuORF	REV__ENST00000443945.6_1_13:47127426-47279607:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.8487548828125	2	448.769252	895.52395	0.36355	0.00016315	-0.26486	-0.00011886	0.098692	4.429E-05	448.7691360234922	29.821	0.48323	29.821	29.605	30.088	0					25	16	2	0	0	0	0.34218	1	5343	5343		9.3474	0	1	147440	+		22934	15792	12914	12915	29091	29091					0.07200910854226095
LGRPQKTSK	9	Unmodified	_LGRPQKTSK_					0	0	0			REV__nc|ENSG00000138193|Q9P212-2|PLCE1	REV__nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.8067321777344	2	507.806365	1013.59818	0.19329	9.8152E-05	0.57152	0.00029022	0.7648	0.00038837	507.80652006198756	33.13	0.4176	33.184	32.985	33.403	0.054371					25	14	2	0	0	0	0.3208	1	6386	6386		5.7319	0.97584	1	187230	+		22935	15912	12915	12916	29092	29092					0.0919225394576415
LGRPQKTSK	9	Unmodified	_LGRPQKTSK_					0	0	0			REV__nc|ENSG00000138193|Q9P212-2|PLCE1	REV__nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.806365	1013.59818	0.17224	8.7462E-05	0.48469	0.00024613	0.65692	0.00033359	507.80655373076917	33.216	0.41518	33.216	33.011	33.426	0	0.029713	5.7043E-05	NaN	5.7319	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184190	+		22936	15912	12915	12916							0.0919225394576415
LGRPQKTSK	9	Unmodified	_LGRPQKTSK_					0	0	0			REV__nc|ENSG00000138193|Q9P212-2|PLCE1	REV__nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	507.806365	1013.59818	0.1912	9.7091E-05	0.00062842	3.1911E-07	0.19183	9.741E-05	507.8062245239708	33.104	0.39499	33.16	32.946	33.341	0.055309	-0.02715	-0.00043457	NaN	5.7319	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201030	+		22937	15912	12915	12916							0.0919225394576415
LGRPRESRPR	10	Unmodified	_LGRPRESRPR_					0	0	0			REV__ENST00000338779.10_1_16:70714719-70719815:-|nuORF	REV__ENST00000338779.10_1_16:70714719-70719815:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2158203125	3	408.574172	1222.70069	0.10479	4.2813E-05	-3.4149	-0.0013952	-3.3101	-0.0013524	408.5729526875166	29.633	0.2269	29.633	29.492	29.718	0					9	7	2	0	0	0	0.31889	1	5334	5334		3.3196	2.1048	1	36438	+		22938	20095	12916	12917	29093	29093					0.09824339737224363
LGRQEASL	8	Unmodified	_LGRQEASL_					0	0	0		ENST00000355243.7_1_10:102587476-102587869:+|nuORF	ENST00000355243.7_1_10:102587476-102587869:+|nuORF	ENST00000355243.7_1_10:102587476-102587869:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.5931396484375	2	437.243067	872.47158	-0.14667	-6.4129E-05	-0.040698	-1.7795E-05	-0.18736	-8.1924E-05	437.24294316145705	22.372	0.4892	22.372	22.133	22.622	0					27	16	2	0	0	0	0.31934	1	3090	3090		24.674	5.2349	1	100080			22939	9607	12917	12918	29094	29094					0.03024327720618203
LGRQIRELYCT	11	Unmodified	_LGRQIRELYCT_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.618896484375	3	451.243211	1350.7078	0.73943	0.00033366	2.5635	0.0011567	3.3029	0.0014904	451.57872156051286	33.748	0.47324	33.815	33.566	34.04	0.06636					24	16	2	0	0	0	0.3322	1	6600	6600		4.7159	0	1	81239			22940	3863	12918	12919	29095	29095					0.046478915028046686
LGRQLLRL	8	Unmodified	_LGRQLLRL_					0	0	0		ENST00000578269.5_1_17:7123303-7123672:+|nuORF;ENST00000582056.5_1_17:7123303-7124179:+|nuORF;ENST00000581562.5_1_17:7123303-7125294:+|nuORF;ENST00000577191.5_1_17:7123303-7125473:+|nuORF;nc|ENSG00000072778|P49748-2|ACADVL;ENSG00000072778|ENST00000356839|ACADVL	ENST00000578269.5_1_17:7123303-7123672:+|nuORF	ENST00000578269.5_1_17:7123303-7123672:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.26629638671875	2	484.821818	967.629084	0.53952	0.00026157	-0.40153	-0.00019467	0.13799	6.6903E-05	484.8216338950886	37.687	0.36927	37.687	37.477	37.846	0					17	12	2	0	0	0	0.34247	1	7800	7800		8.5933	0	1	111640			22941	988	12919	12920	29096	29096					0.14397452050650372
LGRRKYQDSI	10	Unmodified	_LGRRKYQDSI_					0	0	0		ENST00000527357.5_1_11:799309-799717:-|nuORF;nc|ENSG00000177595|Q9HB75-4|PIDD1;ENST00000524486.5_1_11:799309-803120:-|nuORF;nc|ENSG00000177595|Q9HB75-3|PIDD1;nc|ENSG00000177595|Q9HB75-2|PIDD1;ENSG00000177595|ENST00000347755|PIDD1	ENST00000527357.5_1_11:799309-799717:-|nuORF	ENST00000527357.5_1_11:799309-799717:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.1807861328125	3	412.566683	1234.67822	0.11524	4.7543E-05	-0.14792	-6.1025E-05	-0.032679	-1.3482E-05	412.56658050909186	27.265	1.1956	27.253	26.45	27.645	-0.011562					120	41	4	0	0	0	0.31364	1	4580	4580		15.739	15.739	1	631470			22942	7001	12920	12921	29097	29097					0.0702669554896147
LGRRRLEPIK	10	Unmodified	_LGRRRLEPIK_					0	0	0			REV__nc|ENSG00000143194|Q96JY0-2|MAEL	REV__nc|ENSG00000143194|Q96JY0-2|MAEL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.266357421875	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.676	1	16.561	16.061	17.061	-0.11434								0	0	0	0.38065	1	1401	1401		1.9064	0.57673	1		+		22943	16155	12921	12922	29098	29098					0.1689555795353499
LGRRTGPALRE	11	Unmodified	_LGRRTGPALRE_					0	0	0			REV__ENSG00000136205|ENST00000311160|TNS3	REV__ENSG00000136205|ENST00000311160|TNS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.88824462890625	3	409.242311	1224.7051	-0.0093378	-3.8214E-06	-0.3979	-0.00016284	-0.40723	-0.00016666	409.2422846215469	22.31	0.75449	22.21	21.917	22.672	-0.10034					53	27	3	0	0	0	0.33146	1	3204	3204		4.1166	1.1214	1	261470	+		22944	15796	12922	12923	29099	29099					0.10173804160149302
LGRSIHKLS	9	Unmodified	_LGRSIHKLS_					0	0	0			REV__ENSG00000171823|ENST00000339235|FBXL14	REV__ENSG00000171823|ENST00000339235|FBXL14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8091735839844	2	505.808908	1009.60326	0.21287	0.00010767	0.24382	0.00012333	0.45669	0.000231	505.8089838931576	31.043	0.7482	31.043	30.701	31.45	0					52	26	3	0	0	0	0.24581	1	5769	5769		16.942	0	1	318020	+		22945	17668	12923	12924	29100	29100					0.098845578083683
LGRVHTTTI	9	Unmodified	_LGRVHTTTI_					0	0	0		CLCNKA|p.R184H|1|0.29|ENSG00000186510|chr1:16026588-16026588|G/A|missense_variant	CLCNKA|p.R184H|1|0.29|ENSG00000186510|chr1:16026588-16026588|G/A|missense_variant	CLCNKA|p.R184H|1|0.29|ENSG00000186510|chr1:16026588-16026588|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3172912597656	2	499.293091	996.571629	0.17455	8.7152E-05	0.17178	8.5771E-05	0.34634	0.00017292	499.29313488588286	17.897	0.69834	17.78	17.259	17.957	-0.11739					36	23	3	0	0	0	0.25988	1	1739	1739		3.9444	0.3479	1	82760			22946	186	12924	12925	29101	29101					0.07320565054419603
LGRVRQLKE	9	Unmodified	_LGRVRQLKE_					0	0	0			REV__ENSG00000138100|ENST00000380075|TRIM54	REV__ENSG00000138100|ENST00000380075|TRIM54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.8407592773438	2	549.840739	1097.66693	0.49745	0.00027352	-0.43828	-0.00024099	0.059165	3.2531E-05	549.8405171464082	17.21	0.44258	17.15	16.971	17.414	-0.060429					29	15	2	0	0	0	0.3208	1	1555	1555		5.7319	1.4026	1	65717	+		22947	15902	12925	12926	29102	29102					0.12199918245482877
LGRWRKVISP	10	Unmodified	_LGRWRKVISP_					0	0	0		ENST00000313735.10_1_17:26084105-26084228:-|nuORF	ENST00000313735.10_1_17:26084105-26084228:-|nuORF	ENST00000313735.10_1_17:26084105-26084228:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3703002929688	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.01	1	117.01	116.51	117.51	0								0	0	0	0.38202	1	30274	30274		0.40072	0	1				22948	9335	12926	12927	29103	29103					0.13292484033490837
LGSARQFPSP	10	Unmodified	_LGSARQFPSP_					0	0	0			REV__ENST00000244745.3_2_6:21596471-21596606:+|nuORF	REV__ENST00000244745.3_2_6:21596471-21596606:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3009033203125	2	530.282723	1058.55089	0.43755	0.00023203	-1.9195	-0.0010179	-1.4819	-0.00078584	530.7847886341865	23.225	0.087379	23.18	23.109	23.197	-0.044867					4	2	2	0	0	0	0.31237	1	3384	3384		16.149	2.2431	1	30512	+		22949	19499	12927	12928	29104	29104					0.023959746747550525
LGSDFVQLL	9	Unmodified	_LGSDFVQLL_					0	0	0		ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2764587402344	2	496.276575	990.538597	0.57126	0.0002835	0.68966	0.00034226	1.2609	0.00062577	496.27637494360044	85.148	2.2588	85.136	84.267	86.525	-0.01284					309	88	7	0	0	0	0.20626	1	22662	22662		22.736	0.98964	1	6441000			22950	8760	12928	12929	29105	29105					0.04294938211717181
LGSDRERDRKR	11	Unmodified	_LGSDRERDRKR_					0	0	0			REV__nc|ENSG00000144290|Q6U841-4|SLC4A10	REV__nc|ENSG00000144290|Q6U841-4|SLC4A10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.75274658203125	3	463.255279	1386.74401	0.078696	3.6456E-05	1.6446	0.00076186	1.7233	0.00079832	463.591024460386	75.233	0.38385	75.233	74.985	75.369	0					28	13	3	0	0	0	0.33056	1	19290	19290		8.7518	4.3456	1	134250	+		22951	16226	12929	12930	29106	29106					0.06610484723819354
LGSEEWLE	8	Unmodified	_LGSEEWLE_					0	0	0			REV__ENSG00000186364|ENST00000334513|NUDT17	REV__ENSG00000186364|ENST00000334513|NUDT17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2818908691406	2	481.726915	961.439277	0.25811	0.00012434	1.0175	0.00049017	1.2756	0.00061451	481.72731816165197	38.595	0.60189	38.686	38.399	39.001	0.090881					49	21	3	0	0	0	0.34046	1	8025	8025		9.3474	0	1	333500	+		22952	18444	12930	12931	29107	29107					-0.0429850447304716
LGSEEWLE	8	Unmodified	_LGSEEWLE_					0	0	0			REV__ENSG00000186364|ENST00000334513|NUDT17	REV__ENSG00000186364|ENST00000334513|NUDT17	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	481.726915	961.439277	-0.14458	-6.9648E-05	1.4125	0.00068043	1.2679	0.00061079	481.72755813391615	38.715	0.80901	38.715	38.406	39.215	0	0.02695	0.00029336	NaN	9.3474	50	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235270	+		22953	18444	12930	12931							-0.0429850447304716
LGSGELKQ	8	Unmodified	_LGSGELKQ_					0	0	0			REV__ENST00000535549.5_1_11:128331948-128332230:-|nuORF	REV__ENST00000535549.5_1_11:128331948-128332230:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.5422668457031	2	416.232168	830.449782	-0.32951	-0.00013715	-0.22257	-9.2639E-05	-0.55207	-0.00022979	416.2322646792385	14.877	0.47819	14.877	14.649	15.127	0					31	16	3	0	0	0	0.34247	1	907	907		8.5933	0	1	77826	+		22954	22067	12931	12932	29108	29108					0.027775229720418793
LGSKLVYVHHL	11	Unmodified	_LGSKLVYVHHL_					0	0	0		nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1	nc|ENSG00000169679|O43683-2|BUB1	nc|ENSG00000169679|O43683-2|BUB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.2289733886719	3	422.583674	1264.72919	0.22709	9.5965E-05	-0.34236	-0.00014468	-0.11527	-4.8713E-05	422.58347538140504	54.37	0.44817	54.433	54.218	54.667	0.063206					31	16	2	0	0	0	0.32667	1	12874	12874		1.1098	0	1	369290			22955	6374	12932	12933	29109	29109					0.10741644593827004
LGSLFMKAI	9	Unmodified	_LGSLFMKAI_					0	0	0		ENST00000546954.1_1_12:120882275-120882338:-|nuORF	ENST00000546954.1_1_12:120882275-120882338:-|nuORF	ENST00000546954.1_1_12:120882275-120882338:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.27655029296875	2	490.285889	978.557224	0.4279	0.0002098	0.4325	0.00021205	0.8604	0.00042184	490.2858570706667	43.594	0.16013	43.678	43.549	43.71	0.083992					6	5	2	0	0	0	0.27532	1	9575	9575		12.532	0	1	87705			22956	11764	12933	12934	29110	29110					0.06708776581922393
LGSLRLWQR	9	Unmodified	_LGSLRLWQR_					0	0	0		ENST00000468115.1_1_7:1522065-1522398:-|nuORF	ENST00000468115.1_1_7:1522065-1522398:-|nuORF	ENST00000468115.1_1_7:1522065-1522398:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3217163085938	2	564.835457	1127.65636	0.17967	0.00010148	0.098974	5.5904E-05	0.27864	0.00015739	564.8354524997377	26.697	0.42809	26.697	26.469	26.897	0					23	14	2	0	0	0	0.25988	1	4451	4451		3.9444	1.6417	1	99257			22957	10833	12934	12935	29111	29111					0.09763935591013251
LGSLRLWQR	9	Unmodified	_LGSLRLWQR_					0	0	0		ENST00000468115.1_1_7:1522065-1522398:-|nuORF	ENST00000468115.1_1_7:1522065-1522398:-|nuORF	ENST00000468115.1_1_7:1522065-1522398:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.835457	1127.65636	0.32881	0.00018573	-0.069506	-3.9259E-05	0.25931	0.00014647	564.8353266867426	26.709	0.44789	26.671	26.461	26.909	-0.038671	-0.031065	-5.312E-05	NaN	3.9444	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110020			22958	10833	12934	12935							0.09763935591013251
LGSLRLWQR	9	Unmodified	_LGSLRLWQR_					0	0	0		ENST00000468115.1_1_7:1522065-1522398:-|nuORF	ENST00000468115.1_1_7:1522065-1522398:-|nuORF	ENST00000468115.1_1_7:1522065-1522398:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	564.835457	1127.65636	0.41656	0.00023529	-0.21437	-0.00012109	0.20219	0.0001142	564.8351916944794	26.749	0.44691	26.737	26.567	27.014	-0.011562	0.035496	-0.00021677	NaN	3.9444	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93264			22959	10833	12934	12935							0.09763935591013251
LGSPLSGLAR	10	Unmodified	_LGSPLSGLAR_					0	0	0			REV__ENSG00000179930|ENST00000339948|ZNF648	REV__ENSG00000179930|ENST00000339948|ZNF648	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7773132324219	2	485.787641	969.56073	0.37661	0.00018295	-0.057653	-2.8007E-05	0.31896	0.00015495	485.78745064599406	19.761	0.75102	19.705	19.283	20.034	-0.055693					44	26	3	0	0	0	0.3641	1	2313	2313		10.074	2.1638	1	96194	+		22960	18095	12935	12936	29112	29112					0.07473162680128098
LGSQPRRLSL	10	Unmodified	_LGSQPRRLSL_					0	0	0		ENST00000573759.1_1_17:5389898-5392165:+|nuORF;ENST00000574186.1_1_17:5389898-5390352:+|nuORF	ENST00000573759.1_1_17:5389898-5392165:+|nuORF	ENST00000573759.1_1_17:5389898-5392165:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8375854492188	2	563.838197	1125.66184	0.42432	0.00023925	-1.5613	-0.00088031	-1.137	-0.00064106	563.8370699621281	31.81	0.4319	31.852	31.652	32.084	0.042364					27	14	3	0	0	0	0.38773	1	6027	6027		5.7319	0.43497	1	679200			22961	12034	12936	12937	29113	29113					0.10403614382857995
LGSRGRRRLR	10	Unmodified	_LGSRGRRRLR_					0	0	0			REV__ENSG00000257008|ENST00000582579|GPR142	REV__ENSG00000257008|ENST00000582579|GPR142	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.58746337890625	3	409.593678	1225.7592	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.37	1	34.443	33.943	34.943	0.073078								0	0	0	0.36944	1	6764	6764		6.6304	2.754	1		+		22962	19257	12937	12938	29114	29114					0.15535441102338154
LGSRPNIK	8	Unmodified	_LGSRPNIK_					0	0	0			REV__ENSG00000165323|ENST00000525166|FAT3	REV__ENSG00000165323|ENST00000525166|FAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7692565917969	2	442.769252	883.52395	0.16431	7.2753E-05	0.083281	3.6874E-05	0.2476	0.00010963	442.7690906501608	17.533	0.61205	17.533	17.318	17.93	0					37	20	3	0	0	0	0.41097	1	1660	1660		18.135	1.1927	1	84694	+		22963	17228	12938	12939	29115	29115					0.07752910854219408
LGSSKVLAK	9	Unmodified	_LGSSKVLAK_					0	0	0		nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3;nc|ENSG00000160216|Q9NRZ7-3|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.25274658203125	2	451.78711	901.559667	0.032614	1.4735E-05	-0.28441	-0.00012849	-0.2518	-0.00011376	451.7869106005247	23.738	0.48656	23.738	23.542	24.029	0					32	16	3	0	0	0	0.21538	1	3528	3528		26.268	6.9062	1	103930			22964	5447	12939	12940	29116	29116					0.10494948311225016
LGSSLPARG	9	Unmodified	_LGSSLPARG_					0	0	0			REV__ENST00000409117.7_1_2:179316324-179318191:+|nuORF	REV__ENST00000409117.7_1_2:179316324-179318191:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.92578125	2	429.245609	856.476666	-0.18357	-7.8797E-05	-0.11938	-5.1243E-05	-0.30295	-0.00013004	429.2451862828823	24.966	0.53093	24.91	24.719	25.25	-0.055931					32	18	2	0	0	0	0.2451	1	3870	3870		15.847	1.2655	1	156050	+		22965	20754	12940	12941	29117	29117					0.04268631583227034
LGSSLPRQ	8	Unmodified	_LGSSLPRQ_					0	0	0		ENSG00000172671|ENST00000344646|ZFAND4	ENSG00000172671|ENST00000344646|ZFAND4	ENSG00000172671|ENST00000344646|ZFAND4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.9258117675781	2	429.245609	856.476666	-0.39134	-0.00016798	0.17395	7.4668E-05	-0.21739	-9.3314E-05	429.24540643026535	24.89	0.44506	24.859	24.681	25.126	-0.031408					23	14	2	0	0	0	0.32886	1	3862	3862		21.747	3.6117	1	172320			22966	6652	12941	12942	29118	29118					0.04268631583227034
LGSSRHTPI	9	Unmodified	_LGSSRHTPI_					0	0	0		nc|ENSG00000181827|Q2KHR2-1|RFX7;nc|ENSG00000181827|Q2KHR2-2|RFX7;ENSG00000181827|ENST00000559447|RFX7	nc|ENSG00000181827|Q2KHR2-1|RFX7	nc|ENSG00000181827|Q2KHR2-1|RFX7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2550048828125	2	484.269616	966.524678	0.095113	4.606E-05	-0.31738	-0.0001537	-0.22226	-0.00010764	484.2692420266848	23.365	0.57494	23.277	23.138	23.713	-0.087608					28	20	2	0	0	0	0.21905	1	3449	3449		16.942	0	1	45728			22967	7253	12942	12943	29119	29119					0.04007705503283887
LGSTHGRVEL	10	Unmodified	_LGSTHGRVEL_					0	0	0			REV__ENST00000536995.5_1_11:72535848-72537775:+|nuORF	REV__ENST00000536995.5_1_11:72535848-72537775:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.322509765625	2	534.793455	1067.57236	0.16201	8.664E-05	1.6242	0.00086859	1.7862	0.00095523	534.7939856897358	25.119	0.58545	25.063	24.78	25.365	-0.055931					34	20	2	0	0	0	0.30555	1	3983	3983		20.415	5.5763	1	135450	+		22968	22088	12943	12944	29120	29120					0.041273597034887644
LGSTLPRRGT	10	Unmodified	_LGSTLPRRGT_					0	0	0		nc|ENSG00000184507|Q86Y26|NUTM1;ENSG00000184507|ENST00000537011|NUTM1;nc|ENSG00000184507|Q86Y26-3|NUTM1	nc|ENSG00000184507|Q86Y26|NUTM1	nc|ENSG00000184507|Q86Y26|NUTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3093872070312	2	529.309272	1056.60399	0.21679	0.00011475	-0.13836	-7.3234E-05	0.078434	4.1516E-05	529.3092379474342	23.147	0.7234	23.059	22.762	23.486	-0.08761					51	25	3	0	0	0	0.31867	1	3344	3344		18.146	2.2992	1	435020			22969	7459	12944	12945	29121	29121					0.07795352457424087
LGSTRLVSQ	9	Unmodified	_LGSTRLVSQ_					0	0	0		nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4;nc|ENSG00000137171|Q9NSK0-4|KLC4;nc|ENSG00000137171|Q9NSK0-2|KLC4	nc|ENSG00000137171|Q9NSK0-5|KLC4	nc|ENSG00000137171|Q9NSK0-5|KLC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2650146484375	2	480.777274	959.539994	0.21964	0.0001056	3.9508	0.0018995	4.1705	0.0020051	480.7792394995093	42.376	0.35915	42.468	42.385	42.744	0.091362					23	12	3	0	0	0	0.17242	1	9270	9270		29.082	3.6823	1	155860			22970	4032	12945	12946	29122	29122					0.05860572300480271
LGSTRLVSQ	9	Unmodified	_LGSTRLVSQ_					0	0	0		nc|ENSG00000137171|Q9NSK0-5|KLC4;ENSG00000137171|ENST00000347162|KLC4;nc|ENSG00000137171|Q9NSK0-3|KLC4;nc|ENSG00000137171|Q9NSK0-4|KLC4;nc|ENSG00000137171|Q9NSK0-2|KLC4	nc|ENSG00000137171|Q9NSK0-5|KLC4	nc|ENSG00000137171|Q9NSK0-5|KLC4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	480.777274	959.539994	0.11037	5.3062E-05	3.9397	0.0018941	4.0501	0.0019472	480.77945546436985	42.481	0.29321	42.567	42.462	42.755	0.085201	0.049451	-3.9997E-06	NaN	29.082	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192450			22971	4032	12945	12946							0.05860572300480271
LGSVANFLK	9	Unmodified	_LGSVANFLK_					0	0	0			REV__RIOK3|p.E463K|1|0.08|ENSG00000101782|chr18:23479359-23479359|G/A|missense_variant	REV__RIOK3|p.E463K|1|0.08|ENSG00000101782|chr18:23479359-23479359|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.77947998046875	2	474.779285	947.544017	0.23423	0.00011121	0.19744	9.3742E-05	0.43167	0.00020495	474.77939642975537	48.888	1.0396	48.888	48.448	49.488	0					69	37	3	0	0	0	0.023967	2	11222	11222;11273		62.573	16.873	1	871610	+		22972	23300	12946	12947	29123;29124	29123					0.06814661794180665
LGSVANFLK	9	Unmodified	_LGSVANFLK_					0	0	0			REV__RIOK3|p.E463K|1|0.08|ENSG00000101782|chr18:23479359-23479359|G/A|missense_variant	REV__RIOK3|p.E463K|1|0.08|ENSG00000101782|chr18:23479359-23479359|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7795715332031	2	474.779285	947.544017	0.32178	0.00015277	0.10596	5.0308E-05	0.42774	0.00020308	474.7793837161364	48.941	1.0689	48.985	48.497	49.566	0.044891					60	38	2	0	0	0	0.014888	2	11215	11215;11265		71.922	18.089	1	810480	+		22973	23300	12946	12947	29125;29126	29125					0.06814661794180665
LGSVANFLK	9	Unmodified	_LGSVANFLK_					0	0	0			REV__RIOK3|p.E463K|1|0.08|ENSG00000101782|chr18:23479359-23479359|G/A|missense_variant	REV__RIOK3|p.E463K|1|0.08|ENSG00000101782|chr18:23479359-23479359|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.779541015625	2	474.779285	947.544017	0.16342	7.759E-05	0.16237	7.7091E-05	0.32579	0.00015468	474.77938420368935	48.87	0.99709	48.902	48.471	49.468	0.032043					57	35	2	0	0	0	0.0042138	2	11208	11161;11208		92.653	26.197	1	933450	+		22974	23300	12946	12947	29127;29128	29128					0.06814661794180665
LGSVFLVIGS	10	Unmodified	_LGSVFLVIGS_					0	0	0		ENST00000313005.10_1_11:117159212-117159329:-|nuORF	ENST00000313005.10_1_11:117159212-117159329:-|nuORF	ENST00000313005.10_1_11:117159212-117159329:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.29498291015625	2	496.294768	990.574983	0.77237	0.00038332	3.539	0.0017564	4.3113	0.0021397	496.29462276932367	50.466	0.67955	50.466	50.217	50.896	0					93	24	5	0	0	0	0.013578	1	11706	11706		78.728	4.5284	1	790250			22975	9325	12947	12948	29129	29129					0.07931815108429419
LGSVFLVIGS	10	Unmodified	_LGSVFLVIGS_					0	0	0		ENST00000313005.10_1_11:117159212-117159329:-|nuORF	ENST00000313005.10_1_11:117159212-117159329:-|nuORF	ENST00000313005.10_1_11:117159212-117159329:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2948913574219	2	496.294768	990.574983	1.0428	0.00051751	3.1032	0.0015401	4.1459	0.0020576	496.29448704928734	50.471	0.60268	50.516	50.268	50.871	0.044888					77	21	6	0	0	0	0.010678	1	11692	11692		81.89	5.0654	1	1038700			22976	9325	12947	12948	29130	29130					0.07931815108429419
LGSVFLVIGS	10	Unmodified	_LGSVFLVIGS_					0	0	0		ENST00000313005.10_1_11:117159212-117159329:-|nuORF	ENST00000313005.10_1_11:117159212-117159329:-|nuORF	ENST00000313005.10_1_11:117159212-117159329:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2950744628906	2	496.294768	990.574983	1.0326	0.00051249	3.1142	0.0015456	4.1468	0.0020581	496.2945611187919	50.46	0.64404	50.481	50.202	50.846	0.020691					78	23	5	0	0	0	0.013578	1	11721	11721		78.728	1.9033	1	993460			22977	9325	12947	12948	29131	29131					0.07931815108429419
LGSVIKHRA	9	Unmodified	_LGSVIKHRA_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.8036193847656	2	490.803626	979.592698	0.18904	9.2781E-05	0.31035	0.00015232	0.49939	0.0002451	490.80369256496465	28.573	0.90253	28.569	28.055	28.957	-0.0042572					61	31	3	0	0	0	0.25314	1	5049	5049		15.847	3.3156	1	543630	+		22978	18808	12948	12949	29132	29132					0.10208575153933452
LGSVQMFKL	9	Unmodified	_LGSVQMFKL_					0	0	0			REV__ENST00000487481.1_1_17:49230988-49233183:+|nuORF	REV__ENST00000487481.1_1_17:49230988-49233183:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2611694335938	2	511.788795	1021.56304	0.16999	8.7001E-05	-0.14217	-7.276E-05	0.027826	1.4241E-05	511.7884996213383	26.129	0.71207	26.129	25.846	26.558	0					31	24	2	0	0	0	0.25202	1	4225	4225		10.824	0	1	58743	+		22979	21272	12949	12950	29133	29133					0.0531187509358233
LGSVSILTI	9	Unmodified	_LGSVSILTI_					0	0	0			REV__ENSG00000279111|ENST00000623167|OR10X1	REV__ENSG00000279111|ENST00000623167|OR10X1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.618896484375	2	451.781493	901.548434	0.0079389	3.5867E-06	0.88	0.00039757	0.88794	0.00040115	451.782034135882	34.134	0.94228	34.2	33.733	34.676	0.06636					56	33	2	0	0	0	0.25879	1	6600	6600		4.756	0	1	278370	+		22980	19353	12950	12951	29134	29134					0.09372126217101595
LGSVVAHSTF	10	Unmodified	_LGSVVAHSTF_					0	0	0		ENSG00000088002|ENST00000201586|SULT2B1;nc|ENSG00000088002|O00204-2|SULT2B1;ENST00000597923.1_1_19:49099920-49102660:+|nuORF	ENSG00000088002|ENST00000201586|SULT2B1	ENSG00000088002|ENST00000201586|SULT2B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.80426025390625	2	509.271824	1016.5291	0.24573	0.00012514	0.17079	8.6978E-05	0.41652	0.00021212	509.7711315918387	80.103	0.61726	80.164	79.8	80.417	0.061409					37	22	2	0	0	0	0.31629	1	20792	20792		10.074	0	1	75029			22981	1313	12951	12952	29135	29135					0.021491699261900976
LGSVVAHSTF	10	Unmodified	_LGSVVAHSTF_					0	0	0		ENSG00000088002|ENST00000201586|SULT2B1;nc|ENSG00000088002|O00204-2|SULT2B1;ENST00000597923.1_1_19:49099920-49102660:+|nuORF	ENSG00000088002|ENST00000201586|SULT2B1	ENSG00000088002|ENST00000201586|SULT2B1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	509.271824	1016.5291	0.29915	0.00015235	-0.24012	-0.00012229	0.059029	3.0062E-05	509.77131123627356	80.176	0.44293	80.176	79.851	80.294	0	0.039289	-0.00029263	NaN	10.074	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72838			22982	1313	12951	12952							0.021491699261900976
LGSVVAHSTF	10	Unmodified	_LGSVVAHSTF_					0	0	0		ENSG00000088002|ENST00000201586|SULT2B1;nc|ENSG00000088002|O00204-2|SULT2B1;ENST00000597923.1_1_19:49099920-49102660:+|nuORF	ENSG00000088002|ENST00000201586|SULT2B1	ENSG00000088002|ENST00000201586|SULT2B1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	509.271824	1016.5291	0.27022	0.00013761	0.18605	9.4748E-05	0.45626	0.00023236	509.7714260373192	80.097	0.51453	80.07	79.89	80.405	-0.026909	-0.066649	0.00014144	NaN	10.074	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253500			22983	1313	12951	12952							0.021491699261900976
LGTAPRPWL	9	Unmodified	_LGTAPRPWL_					0	0	0		ENST00000409262.7_1_2:74328134-74328503:+|nuORF	ENST00000409262.7_1_2:74328134-74328503:+|nuORF	ENST00000409262.7_1_2:74328134-74328503:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2850036621094	2	505.792727	1009.5709	0.43159	0.0002183	-0.062503	-3.1613E-05	0.36909	0.00018668	505.79252566523024	53.246	1.4449	53.302	52.558	54.003	0.056259					83	53	3	0	0	0	0.1669	1	12662	12662		28.487	5.3384	1	1760700			22984	10244	12952	12953	29136	29136					0.06649770405374511
LGTAPWPLR	9	Unmodified	_LGTAPWPLR_					0	0	0		ENST00000585457.5_1_17:42254041-42254848:-|nuORF	ENST00000585457.5_1_17:42254041-42254848:-|nuORF	ENST00000585457.5_1_17:42254041-42254848:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2849426269531	2	505.792727	1009.5709	0.42603	0.00021548	-0.037997	-1.9218E-05	0.38803	0.00019626	505.7925576137622	53.282	1.089	53.282	52.717	53.806	0					72	40	3	0	0	0	0.12846	1	12665	12665		34.102	1.797	1	1541900			22985	12105	12953	12954	29137	29137					0.06649770405363142
LGTAPWPLR	9	Unmodified	_LGTAPWPLR_					0	0	0		ENST00000585457.5_1_17:42254041-42254848:-|nuORF	ENST00000585457.5_1_17:42254041-42254848:-|nuORF	ENST00000585457.5_1_17:42254041-42254848:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.28515625	2	505.792727	1009.5709	0.39276	0.00019866	0.15934	8.0594E-05	0.55211	0.00027925	505.7926550344104	53.354	1.0667	53.344	52.889	53.956	-0.0096054					77	39	3	0	0	0	0.12846	1	12699	12699		34.102	8.7031	1	1616700			22986	12105	12953	12954	29138	29138					0.06649770405363142
LGTGLLALSF	10	Unmodified	_LGTGLLALSF_					0	0	0		ENST00000484228.1_1_1:205760663-205764640:-|nuORF;ENST00000468057.5_1_1:205760663-205770562:-|nuORF;ENSG00000133065|ENST00000367137|SLC41A1	ENST00000484228.1_1_1:205760663-205764640:-|nuORF	ENST00000484228.1_1_1:205760663-205764640:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.303955078125	2	496.294768	990.574983	0.51443	0.00025531	-0.51003	-0.00025313	0.0044016	2.1845E-06	496.29443597645957	72.882	0.35361	72.882	72.667	73.02	0					19	12	2	0	0	0	0.31867	1	18583	18583		18.146	1.0335	1	55035			22987	3690	12954	12955	29139	29139					0.07931815108429419
LGTGLLALSF	10	Unmodified	_LGTGLLALSF_					0	0	0		ENST00000484228.1_1_1:205760663-205764640:-|nuORF;ENST00000468057.5_1_1:205760663-205770562:-|nuORF;ENSG00000133065|ENST00000367137|SLC41A1	ENST00000484228.1_1_1:205760663-205764640:-|nuORF	ENST00000484228.1_1_1:205760663-205764640:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	496.294768	990.574983	0.51443	0.00025531	-0.51003	-0.00025313	0.0044016	2.1845E-06	496.29443597645957	72.882	0.35361	72.882	72.667	73.02	0	0.016393	4.8384E-05	NaN	18.146	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55035			22988	3690	12954	12955							0.07931815108429419
LGTGVARFY	9	Unmodified	_LGTGVARFY_					0	0	0		ENST00000609548.1_1_4:1161591-1161780:+|nuORF	ENST00000609548.1_1_4:1161591-1161780:+|nuORF	ENST00000609548.1_1_4:1161591-1161780:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7959289550781	2	492.269084	982.523616	0.23206	0.00011424	-0.56536	-0.00027831	-0.3333	-0.00016407	492.26871530430304	41.507	0.35558	41.507	41.199	41.555	0					21	12	2	0	0	0	0.21905	1	8895	8895		16.942	0	1	780120			22989	12328	12955	12956	29140	29140					0.03165491134370768
LGTGVARFY	9	Unmodified	_LGTGVARFY_					0	0	0		ENST00000609548.1_1_4:1161591-1161780:+|nuORF	ENST00000609548.1_1_4:1161591-1161780:+|nuORF	ENST00000609548.1_1_4:1161591-1161780:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7955322265625	2	492.269084	982.523616	0.25079	0.00012346	0.087183	4.2917E-05	0.33797	0.00016637	492.2690227384216	41.396	0.40356	41.487	41.135	41.539	0.090252					27	14	2	0	0	0	0.21905	1	8914	8914		16.942	5.302	1	372520			22990	12328	12955	12956	29141	29141					0.03165491134370768
LGTLIHWWAH	10	Unmodified	_LGTLIHWWAH_					0	0	0			REV__ACER3|p.V258Dfs*8|1|0.05|ENSG00000078124|chr11:77020295-77020296|-/ATATCAGAGAGTATTTTTAT|frameshift_variant	REV__ACER3|p.V258Dfs*8|1|0.05|ENSG00000078124|chr11:77020295-77020296|-/ATATCAGAGAGTATTTTTAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	617.3057250976562	2	617.330008	1232.64546	0.017197	1.0616E-05	-2.7595	-0.0017035	-2.7423	-0.0016929	617.3282185975548	69.727	0.19314	69.793	69.717	69.91	0.066048					12	6	2	0	0	0	0.31847	1	17643	17643		3.5965	0	1	72978	+		22991	13071	12956	12957	29142	29142					0.03844533216761192
LGTLLPLQK	9	Unmodified	_LGTLLPLQK_					0	0	0		ENSG00000145826|ENST00000274507|LECT2	ENSG00000145826|ENST00000274507|LECT2	ENSG00000145826|ENST00000274507|LECT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2637023925781	2	491.81841	981.622267	0.41255	0.0002029	0.0060769	2.9887E-06	0.41863	0.00020589	491.81863968570644	58.6	0.55987	58.692	58.342	58.902	0.091301					28	19	2	0	0	0	0.25066	1	14239	14239		7.2892	0.56607	1	160840			22992	4674	12957	12958	29143	29143					0.13072094379413102
LGTQSLPAK	9	Unmodified	_LGTQSLPAK_					0	0	0			REV__ENSG00000030066|ENST00000378460|NUP160	REV__ENSG00000030066|ENST00000378460|NUP160	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.164306640625	2	457.768917	913.523281	-0.019879	-9.1002E-06	-0.58924	-0.00026973	-0.60912	-0.00027883	457.76858756898537	26.444	0.40189	26.444	26.271	26.673	0					22	13	2	0	0	0	0.21389	1	4309	4309		13.906	0.86358	1	98741	+		22993	13491	12958	12959	29144	29144					0.06306071414530834
LGTSREEAAEL	11	Unmodified	_LGTSREEAAEL_					0	0	0			REV__ENSG00000226321|ENST00000690015|CROCC2	REV__ENSG00000226321|ENST00000690015|CROCC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3007202148438	2	588.298767	1174.58298	0.484	0.00028474	1.7753	0.0010444	2.2593	0.0013291	588.3001411192698	32.009	0.89378	32.009	31.636	32.529	0					66	31	3	0	0	0	0.3429	1	6058	6058		18.373	4.467	1	836470	+		22994	19118	12959	12960	29145	29145					0.002672975672339817
LGTVIALKP	9	Unmodified	_LGTVIALKP_					0	0	0		ENST00000485359.1_1_1:153912533-153913115:-|nuORF	ENST00000485359.1_1_1:153912533-153913115:-|nuORF	ENST00000485359.1_1_1:153912533-153913115:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.26910400390625	2	456.299853	910.585153	0.21275	9.7078E-05	1.5912	0.00072608	1.804	0.00082316	456.30075285664276	39.572	0.92389	39.665	39.47	40.394	0.09267					40	32	2	0	0	0	0.24913	1	8463	8463		12.532	0	1	134160			22995	11089	12960	12961	29146	29146					0.1262842283366581
LGTVIALKP	9	Unmodified	_LGTVIALKP_					0	0	0		ENST00000485359.1_1_1:153912533-153913115:-|nuORF	ENST00000485359.1_1_1:153912533-153913115:-|nuORF	ENST00000485359.1_1_1:153912533-153913115:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	456.299853	910.585153	-0.18337	-8.3674E-05	1.2602	0.00057505	1.0769	0.00049137	456.30037204204467	39.774	0.42845	39.774	39.54	39.968	0	0.070072	-0.00014031	NaN	7.9102	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132420			22996	11089	12960	12961							0.1262842283366581
LGTVLLCFF	9	Unmodified	_LGTVLLCFF_					0	0	0			REV__MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|37|2|sense	REV__MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|37|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.30963134765625	2	506.780439	1011.54633	0.098587	4.9962E-05	-2.755	-0.0013962	-2.6564	-0.0013462	506.7795561635147	95.594	0.11539	95.594	95.525	95.64	0					17	12	2	0	0	0	0.25526	1	25517	25517		4.3292	0	1	40620	+		22997	22857	12961	12962	29147	29147					0.04101374207641584
LGTVLLCFF	9	Unmodified	_LGTVLLCFF_					0	0	0			REV__MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|37|2|sense	REV__MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|37|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.3099670410156	2	506.780439	1011.54633	0.36717	0.00018608	-3.5235	-0.0017857	-3.1564	-0.0015996	507.280239599072	95.338	0.11182	95.334	95.299	95.411	-0.0035324					14	10	2	0	0	0	0.25066	1	25462	25462		7.2892	2.0586	1	66931	+		22998	22857	12961	12962	29148	29148					0.04101374207641584
LGVGGTDGYSL	11	Unmodified	_LGVGGTDGYSL_					0	0	0			REV__ENST00000331222.5_2_8:1733235-1733967:+|nuORF	REV__ENST00000331222.5_2_8:1733235-1733967:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7574462890625	2	519.758746	1037.50294	0.42567	0.00022124	-1.3368	-0.0006948	-0.91111	-0.00047356	520.2603521151243	82.217	0.85503	82.193	81.984	82.839	-0.02404					50	32	2	0	0	0	0.35522	1	21453	21453		17.113	0.96379	1	595410	+		22999	20042	12962	12963	29149	29149					-0.014311440359506378
LGVISNWTDEL	11	Unmodified	_LGVISNWTDEL_					0	0	0		nc|ENSG00000089250|P29475-3|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-3|NOS1	nc|ENSG00000089250|P29475-3|NOS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9142150878906	3	416.215316	1245.62412	0.029307	1.2198E-05	1.1882	0.00049456	1.2175	0.00050676	416.21586944403924	16.695	0.55641	16.58	16.219	16.775	-0.11434					40	19	3	0	0	0	0.3299	1	1307	1307		6.6235	3.3038	1	125870			23000	1356	12963	12964	29150	29150					0.011130586067110926
LGVKDNPK	8	Unmodified	_LGVKDNPK_					0	0	0		ENSG00000115593|ENST00000419482|SMYD1	ENSG00000115593|ENST00000419482|SMYD1	ENSG00000115593|ENST00000419482|SMYD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.5792541503906	2	435.75581	869.497067	-0.13561	-5.9093E-05	-0.40455	-0.00017629	-0.54016	-0.00023538	435.7556339377386	22.531	0.54634	22.443	22.138	22.685	-0.087608					23	19	2	0	0	0	0.34167	1	3171	3171		11.64	0	1	33113			23001	2661	12964	12965	29151	29151					0.0570980224304094
LGVMIHTL	8	Unmodified	_LGVMIHTL_					0	0	0			REV__ENSG00000165688|ENST00000371717|PMPCA	REV__ENSG00000165688|ENST00000371717|PMPCA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.5728454589844	2	442.257131	882.499709	-0.062333	-2.7567E-05	1.99	0.0008801	1.9277	0.00085253	442.253127280142	31.024	0.43901	31.052	30.869	31.308	0.027948					26	15	3	0	0	0	0.32778	1	5771	5771		20.871	5.103	1	105210	+		23002	17255	12965	12966	29152	29152					0.05375934376343139
LGVRILWRAW	10	Unmodified	_LGVRILWRAW_					0	0	0		ENST00000460320.1_1_9:131078140-131084687:-|nuORF	ENST00000460320.1_1_9:131078140-131084687:-|nuORF	ENST00000460320.1_1_9:131078140-131084687:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	635.3837280273438	2	635.382574	1268.7506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.633	1	94.716	94.216	95.216	0.082779								0	0	0	0.38202	1	25247	25247		0.40072	0	1				23003	10726	12966	12967	29153	29153					0.12697074413154041
LGVRTFVPK	9	Unmodified	_LGVRTFVPK_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3078918457031	2	508.816202	1015.61785	0.38415	0.00019546	1.0804	0.00054975	1.4646	0.00074521	509.31834474660945	44.815	0.35261	44.883	44.627	44.979	0.068569					16	12	2	0	0	0	0.18803	1	9901	9901		25.399	3.6527	1	123310			23004	5711	12967	12968	29154	29154					0.11066629956519591
LGVSNAAMEDL	11	Unmodified	_LGVSNAAMEDL_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP;ENST00000486937.5_1_21:47666536-47687014:-|nuORF;ENST00000496607.5_1_21:47655184-47686088:-|nuORF	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2692260742188	2	560.271164	1118.52777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.951	1	94.949	94.449	95.449	-0.0020142								0	0	0	0.35283	1	25349	25349		7.609	0	1				23005	5456	12968	12969	29155	29155					-0.026748322248977274
LGVTSSALSL	10	Unmodified	_LGVTSSALSL_					0	0	0			REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7822265625	2	474.274032	946.533512	0.067261	3.19E-05	0.34187	0.00016214	0.40913	0.00019404	474.2741128981429	29.354	0.37049	29.367	29.166	29.536	0.013475					25	12	3	0	0	0	0.25875	1	5233	5233		32.305	11.891	1	100650	+		23006	16723	12969	12970	29156	29156					0.058106343490862855
LGVVNVLLGLV	11	Unmodified	_LGVVNVLLGLV_					0	0	0			REV__nc|ENSG00000196660|Q6XR72-3|SLC30A10	REV__nc|ENSG00000196660|Q6XR72-3|SLC30A10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2957153320312	2	548.360442	1094.70633	0.76982	0.00042214	-0.24389	-0.00013374	0.52593	0.0002884	548.8617055613247	60.867	0.41709	60.867	60.635	61.052	0					28	14	3	0	0	0	0.329	1	14952	14952		9.3831	0	1	1044400	+		23007	18674	12970	12971	29157	29157					0.16276625476302797
LGVVNVLLGLV	11	Unmodified	_LGVVNVLLGLV_					0	0	0			REV__nc|ENSG00000196660|Q6XR72-3|SLC30A10	REV__nc|ENSG00000196660|Q6XR72-3|SLC30A10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.30810546875	2	548.360442	1094.70633	0.86875	0.00047639	-0.40926	-0.00022442	0.45949	0.00025197	548.3602365722744	60.897	0.42226	60.888	60.546	60.968	-0.0094566					32	15	3	0	0	0	0.329	1	14891	14891		5.7319	0	1	583790	+		23008	18674	12970	12971	29158	29158					0.16276625476302797
LGVVNVLLGLV	11	Unmodified	_LGVVNVLLGLV_					0	0	0			REV__nc|ENSG00000196660|Q6XR72-3|SLC30A10	REV__nc|ENSG00000196660|Q6XR72-3|SLC30A10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.360442	1094.70633	0.82939	0.0004548	-0.13638	-7.4788E-05	0.693	0.00038001	548.3603045968354	60.774	0.51266	60.871	60.552	61.065	0.096985	-0.0039414	0.00014144	NaN	5.7319	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	759390	+		23009	18674	12970	12971							0.16276625476302797
LGVWKQVK	8	Unmodified	_LGVWKQVK_					0	0	0		chr4:39825488-39837932|137|15.08|0.92|4.04|-|0|PDS5A,None|1	chr4:39825488-39837932|137|15.08|0.92|4.04|-|0|PDS5A,None|1	chr4:39825488-39837932|137|15.08|0.92|4.04|-|0|PDS5A,None|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.29010009765625	2	479.297645	956.580737	0.16586	7.9498E-05	0.13218	6.3356E-05	0.29805	0.00014285	479.29753111167344	46.068	0.78727	46.068	45.805	46.592	0					55	28	3	0	0	0	0.31088	1	10269	10269		21.747	9.2151	1	829220			23010	163	12971	12972	29159	29159					0.10070958410756248
LGVYYSTDH	9	Unmodified	_LGVYYSTDH_					0	0	0		ENST00000409150.7_2_2:191371761-191371833:-|nuORF	ENST00000409150.7_2_2:191371761-191371833:-|nuORF	ENST00000409150.7_2_2:191371761-191371833:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7459716796875	2	527.745639	1053.47673	0.46101	0.00024329	-0.48196	-0.00025435	-0.020956	-1.1059E-05	527.7455691087462	23.324	0.65784	23.279	22.898	23.556	-0.044867					48	23	3	0	0	0	0.27532	1	3453	3453		12.532	3.1841	1	104150			23011	10240	12972	12973	29160	29160					-0.047874132074412046
LGVYYSTDH	9	Unmodified	_LGVYYSTDH_					0	0	0		ENST00000409150.7_2_2:191371761-191371833:-|nuORF	ENST00000409150.7_2_2:191371761-191371833:-|nuORF	ENST00000409150.7_2_2:191371761-191371833:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	527.745639	1053.47673	0.28549	0.00015067	-0.67962	-0.00035867	-0.39413	-0.000208	527.7457221861118	23.314	0.68887	23.314	22.791	23.48	0	0.065091	-0.00042456	NaN	12.532	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108160			23012	10240	12972	12973							-0.047874132074412046
LGVYYSTDH	9	Unmodified	_LGVYYSTDH_					0	0	0		ENST00000409150.7_2_2:191371761-191371833:-|nuORF	ENST00000409150.7_2_2:191371761-191371833:-|nuORF	ENST00000409150.7_2_2:191371761-191371833:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	527.745639	1053.47673	0.2534	0.00013373	0.00045188	2.3848E-07	0.25385	0.00013397	527.7456418762717	23.241	0.66567	23.154	22.82	23.486	-0.087608	-0.094993	0.00029325	NaN	12.532	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125910			23013	10240	12972	12973							-0.047874132074412046
LGVYYSTDH	9	Unmodified	_LGVYYSTDH_					0	0	0		ENST00000409150.7_2_2:191371761-191371833:-|nuORF	ENST00000409150.7_2_2:191371761-191371833:-|nuORF	ENST00000409150.7_2_2:191371761-191371833:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	527.745639	1053.47673	0.46101	0.00024329	-0.48196	-0.00025435	-0.020956	-1.1059E-05	527.7455691087462	23.324	0.65784	23.279	22.898	23.556	-0.044867	0.029902	-0.00021593	NaN	12.532	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104150			23014	10240	12972	12973							-0.047874132074412046
LGWAGLPK	8	Unmodified	_LGWAGLPK_					0	0	0		ENST00000496239.5_1_1:16776277-16776712:+|nuORF	ENST00000496239.5_1_1:16776277-16776712:+|nuORF	ENST00000496239.5_1_1:16776277-16776712:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.2433776855469	2	421.250163	840.485774	-0.31031	-0.00013072	-3.785	-0.0015944	-4.0953	-0.0017252	421.24783989718213	13.09	1.0282	12.991	12.49	13.519	-0.099291					58	35	3	0	0	0	0.45942	1	407	407		2.5775	0	1	61213			23015	11229	12973	12974	29161	29161					0.05915024939554314
LGYDLPMV	8	Oxidation (M)	_LGYDLPM(Oxidation (M))V_		LGYDLPM(1)V		LGYDLPM(67)V	0	0	1		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.2310485839844	2	462.230779	922.447005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.37	1	66.37	65.87	66.87	0								0	0	0	0.069846	1	16608	16608		67.035	28.884	1				23016	7989	12974	12975	29162	29162		870			-0.017320684771107153
LGYDLPMV	8	Oxidation (M)	_LGYDLPM(Oxidation (M))V_		LGYDLPM(1)V		LGYDLPM(67)V	0	0	1		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.23095703125	2	462.230779	922.447005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.546	1	66.546	66.046	67.046	0								0	0	0	0.069846	1	16662	16662		67.035	28.884	1				23017	7989	12974	12975	29163	29163		870			-0.017320684771107153
LGYDLPMV	8	Oxidation (M)	_LGYDLPM(Oxidation (M))V_		LGYDLPM(1)V		LGYDLPM(54)V	0	0	1		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.2311096191406	2	462.230779	922.447005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.716	1	66.716	66.216	67.216	0								0	0	0	0.14479	1	16714	16714		53.576	21.459	1				23018	7989	12974	12975	29164	29164		870			-0.017320684771107153
LGYDLPMV	8	Oxidation (M)	_LGYDLPM(Oxidation (M))V_		LGYDLPM(1)V		LGYDLPM(50)V	0	0	1		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.23126220703125	2	462.230779	922.447005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.223	1	66.307	65.807	66.807	0.083832								0	0	0	0.16655	1	16556	16556		49.669	19.444	1				23019	7989	12974	12975	29165	29165		870			-0.017320684771107153
LGYDLPMV	8	Oxidation (M)	_LGYDLPM(Oxidation (M))V_		LGYDLPM(1)V		LGYDLPM(74)V	0	0	1		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.2309265136719	2	462.230779	922.447005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.38	1	66.464	65.964	66.964	0.083832								0	0	0	0.041718	1	16604	16604		74.396	36.245	1				23020	7989	12974	12975	29166	29166		870			-0.017320684771107153
LGYDLPMV	8	Oxidation (M)	_LGYDLPM(Oxidation (M))V_		LGYDLPM(1)V		LGYDLPM(50)V	0	0	1		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.23089599609375	2	462.230779	922.447005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.541	1	66.625	66.125	67.125	0.083832								0	0	0	0.16655	1	16653	16653		49.669	23.328	1				23021	7989	12974	12975	29167	29167		870			-0.017320684771107153
LGYDLPMV	8	Oxidation (M)	_LGYDLPM(Oxidation (M))V_		LGYDLPM(1)V		LGYDLPM(67)V	0	0	1		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.2309265136719	2	462.230779	922.447005	0.11579	5.3522E-05	1.433	0.00066237	1.5488	0.00071589	462.2315931633455	66.616	2.2456	66.602	65.748	67.993	-0.013596					132	79	3	0	0	0	0.073545	3	16636	16591;16636;16679		67.035	28.019	1	1288600			23022	7989	12974	12975	29168;29169;29170	29169		870			-0.017320684771107153
LGYELIQTWKL	11	Unmodified	_LGYELIQTWKL_					0	0	0		ENST00000526495.5_1_14:95608047-95624337:-|nuORF	ENST00000526495.5_1_14:95608047-95624337:-|nuORF	ENST00000526495.5_1_14:95608047-95624337:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2586364746094	3	455.258856	1362.75474	-0.24242	-0.00011036	-0.44679	-0.00020341	-0.68921	-0.00031377	455.25864892332555	28.063	0.60616	28.063	27.84	28.446	0					67	20	4	0	0	0	0.4112	1	4887	4887		9.7643	1.0125	1	516660			23023	11555	12975	12976	29171	29171					0.08787074325550748
LGYIEYSDLE	10	Unmodified	_LGYIEYSDLE_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.298095703125	2	601.284794	1200.55504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.857	1	89.857	89.357	90.357	0								0	0	0	0.37664	1	23795	23795		3.5965	0.31518	1				23024	1183	12976	12977	29172	29172					-0.03722025412844232
LGYKELNRKV	10	Unmodified	_LGYKELNRKV_					0	0	0			REV__ENSG00000196296|ENST00000395503|ATP2A1	REV__ENSG00000196296|ENST00000395503|ATP2A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.7851867675781	3	407.243429	1218.70846	-0.18745	-7.6338E-05	-0.47933	-0.0001952	-0.66678	-0.00027154	407.2430891327915	26.438	0.34258	26.438	26.271	26.614	0					20	11	3	0	0	0	0.31696	1	4332	4332		6.6304	1.9145	1	59187	+		23025	18640	12977	12978	29173	29173					0.10785054214102274
LGYKELNRKV	10	Unmodified	_LGYKELNRKV_					0	0	0			REV__ENSG00000196296|ENST00000395503|ATP2A1	REV__ENSG00000196296|ENST00000395503|ATP2A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	407.243429	1218.70846	0.14145	5.7603E-05	-1.0195	-0.00041518	-0.87804	-0.00035758	407.57756921546235	26.519	0.45934	26.497	26.409	26.869	-0.022238	0.029474	-0.00050656	NaN	6.6304	24	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85418	+		23026	18640	12977	12978							0.10785054214102274
LGYLNHVR	8	Unmodified	_LGYLNHVR_					0	0	0		nc|ENSG00000020426|P51948-2|MNAT1;ENSG00000020426|ENST00000261245|MNAT1	nc|ENSG00000020426|P51948-2|MNAT1	nc|ENSG00000020426|P51948-2|MNAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.76129150390625	2	486.274701	970.534849	0.2569	0.00012492	0.22813	0.00011093	0.48503	0.00023586	486.27461958293975	30.646	1.0632	30.674	30.159	31.222	0.027946					101	37	4	0	0	0	0.42446	1	5685	5685		14.582	0	1	462910			23027	504	12978	12979	29174	29174					0.0484031322851024
LGYPPPRP	8	Unmodified	_LGYPPPRP_					0	0	0		ENST00000427220.5_1_3:9851662-9852079:+|nuORF	ENST00000427220.5_1_3:9851662-9852079:+|nuORF	ENST00000427220.5_1_3:9851662-9852079:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.8000793457031	2	448.75307	895.491587	0.20334	9.125E-05	-2.7244	-0.0012226	-2.521	-0.0011313	448.75150702374583	62.299	0.29144	62.396	62.254	62.546	0.096985					17	10	2	0	0	0	0.34147	1	15352	15352		11.114	0	1	78635			23028	10430	12979	12980	29175	29175					0.039661234512209376
LGYPSPLFP	9	Unmodified	_LGYPSPLFP_					0	0	0		ENST00000401088.8_1_1:16722873-16723131:+|nuORF	ENST00000401088.8_1_1:16722873-16723131:+|nuORF	ENST00000401088.8_1_1:16722873-16723131:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.3042907714844	2	495.768386	989.522219	0.49004	0.00024295	4.4148	0.0021887	4.9048	0.0024317	495.76987003992497	72.265	0.27151	72.265	72.184	72.456	0					12	9	2	0	0	0	0.21137	1	18422	18422		24.674	0	1	80384			23029	10189	12980	12981	29176	29176					0.02703857045617042
LGYRPGPR	8	Unmodified	_LGYRPGPR_					0	0	0			REV__ENST00000359128.9_1_16:3614897-3617284:-|nuORF	REV__ENST00000359128.9_1_16:3614897-3617284:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2790222167969	2	458.261594	914.508634	0.009382	4.2994E-06	-1.2174	-0.00055789	-1.208	-0.00055359	458.2610060795864	29.25	0.44735	29.264	29.033	29.481	0.013474					24	15	2	0	0	0	0.31375	1	5234	5234		26.341	0	1	177620	+		23030	20240	12981	12982	29177	29177					0.04796044057036397
LGYVPHPSSL	10	Unmodified	_LGYVPHPSSL_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.2588500976562	2	535.287474	1068.5604	0.58734	0.0003144	0.47809	0.00025592	1.0654	0.00057031	535.2879756252509	51.481	0.48734	51.481	51.271	51.759	0					24	17	2	0	0	0	0.29519	1	12102	12102		15.847	5.0233	1	287050			23031	915	12982	12983	29178	29178					0.028857429602794582
LHAFIAQALCL	11	Unmodified	_LHAFIAQALCL_					0	0	0		ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-3|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3345336914062	2	600.333901	1198.65325	0.46962	0.00028193	1.0274	0.00061679	1.497	0.00089872	600.3346338446844	82.233	2.1935	82.209	81.045	83.239	-0.02404					129	90	2	0	0	0	0.46059	1	21348	21348		3.2813	0.28607	1	430490			23032	2443	12983	12984	29179	29179					0.06186924422013362
LHAFLKRN	8	Unmodified	_LHAFLKRN_					0	0	0		nc|ENSG00000142166|P17181-2|IFNAR1;nc|ENSG00000142166|P17181-4|IFNAR1;nc|ENSG00000142166|P17181-3|IFNAR1;ENSG00000142166|ENST00000270139|IFNAR1	nc|ENSG00000142166|P17181-2|IFNAR1	nc|ENSG00000142166|P17181-2|IFNAR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2690124511719	2	499.798343	997.582134	0.49677	0.00024828	-1.2455	-0.00062249	-0.74871	-0.0003742	499.7976274388971	21.062	0.57591	21.062	20.678	21.254	0					24	19	2	0	0	0	0.34434	1	2674	2674		0.79363	0	1	40782			23033	4425	12984	12985	29180	29180					0.08324592499502614
LHAKIRRE	8	Unmodified	_LHAKIRRE_					0	0	0			REV__ENSG00000283528|ENST00000636941|TCAF2C	REV__ENSG00000283528|ENST00000636941|TCAF2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.8148498535156	2	511.814525	1021.6145	0.47961	0.00024547	-0.98394	-0.0005036	-0.50433	-0.00025813	511.8140873824494	21.213	0.59438	21.103	20.894	21.488	-0.11003					38	20	3	0	0	0	0.44389	1	2757	2757		7.9102	1.187	1	145350	+		23034	17577	12985	12986	29181	29181					0.10455379902509776
LHAKRQHLPL	10	Unmodified	_LHAKRQHLPL_					0	0	0			REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF	REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8718872070312	2	606.869831	1211.72511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.83	1	116.83	116.33	117.33	0								0	0	0	0.38197	1	30234	30234		0.40072	0	1		+		23035	21390	12986	12987	29182	29182					0.12771599890766083
LHAKYSVGG	9	Unmodified	_LHAKYSVGG_					0	0	0			REV__ENST00000482974.1_1_3:50608300-50608690:+|nuORF	REV__ENST00000482974.1_1_3:50608300-50608690:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.6080627441406	2	466.253434	930.492316	0.33919	0.00015815	-1.044	-0.00048675	-0.70477	-0.0003286	466.2511029724674	93.051	0.075523	93.051	93.02	93.096	0.00046539					8	6	2	0	0	0	0.25066	1	24768	24768		7.2892	2.5332	1	37933	+		23036	21514	12987	12988	29183	29183					0.024289181002927762
LHALIAEKS	9	Unmodified	_LHALIAEKS_					0	0	0			REV__ENST00000520622.5_1_13:45944167-45951213:+|nuORF	REV__ENST00000520622.5_1_13:45944167-45951213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7827453613281	2	491.290017	980.565481	0.21511	0.00010568	0.008433	4.143E-06	0.22354	0.00010982	491.2898329999925	26.276	1.2521	26.276	25.955	27.207	0					71	43	2	0	0	0	0.28674	1	4424	4424		10.824	0	1	287260	+		23037	21887	12988	12989	29184	29184					0.07442046822893644
LHAPCLISL	9	Unmodified	_LHAPCLISL_					0	0	0			REV__ENST00000374580.8_1_2:203420090-203420120:+|nuORF	REV__ENST00000374580.8_1_2:203420090-203420120:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.78485107421875	2	483.775688	965.536823	0.18822	9.1057E-05	-1.6256	-0.00078641	-1.4373	-0.00069535	483.775241090247	69.112	0.27871	69.112	68.951	69.229	0					15	9	2	0	0	0	0.21303	1	17431	17431		21.747	3.6117	1	87457	+		23038	20464	12989	12990	29185	29185					0.05267605922108487
LHAPKSLRR	9	Unmodified	_LHAPKSLRR_					0	0	0			REV__MLT2B3_dup487|chr2:208542565-208543130:-|1.8246380979611807|0.059098090958753|4.95|523.0|33|3|anti-sense	REV__MLT2B3_dup487|chr2:208542565-208543130:-|1.8246380979611807|0.059098090958753|4.95|523.0|33|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.33544921875	2	539.335624	1076.6567	0.15587	8.4067E-05	-0.05043	-2.7199E-05	0.10544	5.6868E-05	539.3355748541131	13.852	0.30531	13.852	13.687	13.992	0					21	10	3	0	0	0	0.33018	1	566	566		4.3292	2.0265	1	51924	+		23039	22868	12990	12991	29186	29186					0.12143355310877268
LHAPLCLTID	10	Unmodified	_LHAPLCLTID_					0	0	0			REV__ENST00000470278.5_1_1:151028391-151029161:-|nuORF	REV__ENST00000470278.5_1_1:151028391-151029161:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.28271484375	2	548.296985	1094.57942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.552	1	43.552	43.052	44.052	0								0	0	0	0.30803	1	9577	9577		26.884	0.61551	1		+		23040	21037	12991	12992	29187	29187					0.03590956259677114
LHARISASK	9	Unmodified	_LHARISASK_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.6662292480469	2	491.793258	981.571963	0.49583	0.00024384	-1.1444	-0.00056279	-0.64854	-0.00031895	491.7923706777054	26.807	0.41728	26.796	26.567	26.984	-0.01156					23	14	2	0	0	0	0.25526	1	4446	4446		7.9102	0	1	32939	+		23041	16599	12992	12993	29188	29188					0.08043984774269575
LHARVLSTL	9	Unmodified	_LHARVLSTL_					0	0	0			REV__ENSG00000123358|ENST00000394825|NR4A1	REV__ENSG00000123358|ENST00000394825|NR4A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2634582519531	2	505.311284	1008.60801	0.097574	4.9305E-05	-3.8965	-0.0019689	-3.7989	-0.0019196	505.80825598893915	76.486	0.14107	76.54	76.423	76.564	0.053413					6	4	2	0	0	0	0.22596	1	19697	19697		21.747	1.293	1	21919	+		23042	15187	12993	12994	29189	29189					0.10405441951138528
LHCAVHLFHR	10	Unmodified	_LHCAVHLFHR_					0	0	0			REV__ENST00000397166.6_1_8:38117656-38118240:+|nuORF	REV__ENST00000397166.6_1_8:38117656-38118240:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5786437988281	3	411.553832	1231.63967	-0.11335	-4.6651E-05	-3.0982	-0.0012751	-3.2115	-0.0013217	411.8874353560081	29.918	0.43565	29.931	29.684	30.12	0.013474					34	14	3	0	0	0	0.31942	1	5360	5360		6.1918	3.6934	1	85650	+		23043	20666	12994	12995	29190	29190					0.03311111433413316
LHCLSQKPNLT	11	Unmodified	_LHCLSQKPNLT_					0	0	0		ENST00000535664.5_1_12:65720686-65847531:+|nuORF	ENST00000535664.5_1_12:65720686-65847531:+|nuORF	ENST00000535664.5_1_12:65720686-65847531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.3372802734375	2	627.337172	1252.65979	-0.20562	-0.00012899	0.11725	7.3553E-05	-0.088372	-5.5439E-05	627.3371921013262	12.945	0.26237	12.878	12.702	12.965	-0.067495					18	8	3	0	0	0	0.45108	1	279	279		4.5289	0.33936	1	70752			23044	11674	12995	12996	29191	29191					0.04356817582743133
LHCSFHPGQGE	11	Unmodified	_LHCSFHPGQGE_					0	0	0		ENST00000473997.5_1_20:31973462-31973540:-|nuORF	ENST00000473997.5_1_20:31973462-31973540:-|nuORF	ENST00000473997.5_1_20:31973462-31973540:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.300048828125	2	606.266747	1210.51894	0.42066	0.00025503	2.5955	0.0015736	3.0162	0.0018286	606.268234282663	73.269	0.14412	73.269	73.163	73.307	0					5	4	2	0	0	0	0.33119	1	18728	18728		5.7319	0.83484	1	52758			23045	10913	12996	12997	29192	29192					-0.07789761070671375
LHCSFHPGQGE	11	Unmodified	_LHCSFHPGQGE_					0	0	0		ENST00000473997.5_1_20:31973462-31973540:-|nuORF	ENST00000473997.5_1_20:31973462-31973540:-|nuORF	ENST00000473997.5_1_20:31973462-31973540:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.2996215820312	2	606.266747	1210.51894	0.59808	0.00036259	3.9556	0.0023981	4.5536	0.0027607	606.7716653697792	72.633	0.3056	72.687	72.484	72.789	0.053841					20	10	3	0	0	0	0.329	1	18531	18531		9.3831	2.66	1	106300			23046	10913	12996	12997	29193	29193					-0.07789761070671375
LHDARLLRTI	10	Unmodified	_LHDARLLRTI_					0	0	0		nc|ENSG00000119599|Q8WV16-4|DCAF4;nc|ENSG00000119599|Q8WV16-3|DCAF4;nc|ENSG00000119599|Q8WV16-5|DCAF4;ENSG00000119599|ENST00000358377|DCAF4	nc|ENSG00000119599|Q8WV16-4|DCAF4	nc|ENSG00000119599|Q8WV16-4|DCAF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.24700927734375	3	403.247173	1206.71969	-0.093909	-3.7868E-05	-0.31604	-0.00012744	-0.40995	-0.00016531	403.24702562249814	33.411	1.1584	33.411	32.865	34.023	0					104	41	4	0	0	0	0.22625	1	6481	6481		29.437	6.6622	1	1549500			23047	2887	12997	12998	29194	29194					0.12459876308275852
LHDARLLRTI	10	Unmodified	_LHDARLLRTI_					0	0	0		nc|ENSG00000119599|Q8WV16-4|DCAF4;nc|ENSG00000119599|Q8WV16-3|DCAF4;nc|ENSG00000119599|Q8WV16-5|DCAF4;ENSG00000119599|ENST00000358377|DCAF4	nc|ENSG00000119599|Q8WV16-4|DCAF4	nc|ENSG00000119599|Q8WV16-4|DCAF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2469787597656	3	403.247173	1206.71969	-0.098755	-3.9823E-05	-0.17486	-7.0514E-05	-0.27362	-0.00011034	403.24709883491494	33.262	0.92035	33.317	32.973	33.893	0.055309					104	32	5	0	0	0	0.22625	1	6447	6447		29.437	1.2035	1	1798600			23048	2887	12997	12998	29195	29195					0.12459876308275852
LHDHPIIS	8	Unmodified	_LHDHPIIS_					0	0	0		ENSG00000136535|ENST00000389554|TBR1	ENSG00000136535|ENST00000389554|TBR1	ENSG00000136535|ENST00000389554|TBR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2348937988281	2	466.253434	930.492316	0.41986	0.00019576	1.4973	0.00069813	1.9172	0.00089389	466.2540030611134	54.484	0.26954	54.469	54.361	54.631	-0.015923					10	8	2	0	0	0	0.34046	1	12920	12920		14.582	3.4672	1	89060			23049	3980	12998	12999	29196	29196					0.024289181002814075
LHEDLKPLF	9	Unmodified	_LHEDLKPLF_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2967529296875	2	556.310949	1110.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.75	1	100.79	100.29	101.29	0.038994								0	0	0	0.25499	1	26902	26902		4.756	0	1				23050	7514	12999	13000	29197	29197					0.05646602511410492
LHEKHHLL	8	Unmodified	_LHEKHHLL_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2977905273438	2	513.795801	1025.57705	0.1149	5.9037E-05	0.55735	0.00028637	0.67226	0.0003454	514.2979497525108	19.24	1.0692	19.24	18.864	19.933	0					96	37	5	0	0	0	0.41097	2	2168	2168;2188		18.135	0	1	408390			23051	1324	13000	13001	29198;29199	29198					0.0652828863690047
LHELQFAR	8	Unmodified	_LHELQFAR_					0	0	0		nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7730712890625	2	507.279983	1012.54541	0.22529	0.00011428	0.74728	0.00037908	0.97257	0.00049336	507.2803269782992	23.944	0.3781	23.871	23.646	24.024	-0.072557					20	12	2	0	0	0	0.45307	1	3589	3589		4.756	0.42677	1	62857			23052	12953	13001	13002	29200	29200					0.03964295882940405
LHEQYPLAF	9	Unmodified	_LHEQYPLAF_					0	0	0		ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.2772216796875	2	559.287474	1116.5604	0.21785	0.00012184	-1.5493	-0.00086649	-1.3314	-0.00074465	559.2866156367332	59.481	0.61544	59.576	59.266	59.881	0.095089					40	21	3	0	0	0	0.25989	1	14524	14524		14.838	0	1	314800			23053	2140	13002	13003	29201	29201					0.0067774296028346726
LHERQRRKKRR	11	Unmodified	_LHERQRRKKRR_					0	0	0			REV__nc|ENSG00000153253|Q9NY46-4|SCN3A	REV__nc|ENSG00000153253|Q9NY46-4|SCN3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.6574096679688	3	521.657341	1561.95019	0.56594	0.00029523	-0.14924	-7.7851E-05	0.41671	0.00021738	521.6572091274389	49.407	1.7667	49.407	49.105	50.872	0					223	64	5	0	0	0	0.48495	1	11518	11518		0.08335	0	1	4508000	+		23054	16620	13003	13004	29202	29202					0.1916952241360832
LHERVLRHEE	10	Unmodified	_LHERVLRHEE_					0	0	0			REV__nc|ENSG00000116747|P10155-3|RO60	REV__nc|ENSG00000116747|P10155-3|RO60	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.9055480957031	3	439.905587	1316.69493	0.1115	4.9049E-05	-0.19128	-8.4144E-05	-0.079779	-3.5095E-05	439.90547063026384	21.621	0.99828	21.572	21.092	22.09	-0.049377					91	35	4	0	0	0	0.35267	1	2919	2919		12.175	1.1095	1	845570	+		23055	14935	13004	13005	29203	29203					0.04925196434942336
LHESCWPSF	9	Unmodified	_LHESCWPSF_					0	0	0			REV__ENST00000290551.4_1_1:203277738-203278125:+|nuORF	REV__ENST00000290551.4_1_1:203277738-203278125:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8301391601562	2	553.242209	1104.46987	0.67834	0.00037529	-0.10619	-5.8751E-05	0.57214	0.00031653	553.2409355124329	77.245	0.52754	77.214	77.045	77.573	-0.031334					25	18	2	0	0	0	0.25066	1	19946	19946		7.2892	1.5288	1	119010	+		23056	19750	13005	13006	29204	29204					-0.07819049359636665
LHFAHSCKTL	10	Unmodified	_LHFAHSCKTL_					0	0	0			REV__ENST00000435251.2_1_7:76130606-76132230:+|nuORF	REV__ENST00000435251.2_1_7:76130606-76132230:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.31982421875	2	578.800226	1155.5859	0.24746	0.00014323	2.2516	0.0013032	2.499	0.0014464	578.8012172990203	26.617	0.39374	26.578	26.402	26.795	-0.038671					17	13	2	0	0	0	0.31794	1	4359	4359		8.1555	3.8263	1	56688	+		23057	14056	13006	13007	29205	29205					0.014328942110751086
LHFIQLFFI	9	Unmodified	_LHFIQLFFI_					0	0	0		ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3430786132812	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.67	1	113.69	113.19	114.19	0.014824								0	0	0	0.26704	1	29574	29574		0.6015	0	1				23058	2648	13007	13008	29206	29206					0.08828373650430876
LHFIQLFFI	9	Unmodified	_LHFIQLFFI_					0	0	0		ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3416748046875	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.64	1	115.66	115.16	116.16	0.018738								0	0	0	0.26704	1	30029	30029		0.6015	0	1				23059	2648	13007	13008	29207	29207					0.08828373650430876
LHFPCVSCDH	10	Unmodified	_LHFPCVSCDH_					0	0	0		ENST00000369244.6_1_6:99374760-99382655:-|nuORF;ENST00000229971.2_1_6:99374760-99395723:-|nuORF	ENST00000369244.6_1_6:99374760-99382655:-|nuORF	ENST00000369244.6_1_6:99374760-99382655:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.2451782226562	2	579.246969	1156.47938	0.052546	3.0437E-05	-2.4954	-0.0014455	-2.4429	-0.001415	579.2455780179592	25.467	0.37901	25.411	25.186	25.565	-0.055931					18	12	2	0	0	0	0.32123	1	4062	4062		1.6526	0.17072	1	78758			23060	8858	13008	13009	29208	29208					-0.0925960434578883
LHFPCVSCDH	10	Unmodified	_LHFPCVSCDH_					0	0	0		ENST00000369244.6_1_6:99374760-99382655:-|nuORF;ENST00000229971.2_1_6:99374760-99395723:-|nuORF	ENST00000369244.6_1_6:99374760-99382655:-|nuORF	ENST00000369244.6_1_6:99374760-99382655:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	579.246969	1156.47938	0.16421	9.5121E-05	-3.3325	-0.0019304	-3.1683	-0.0018352	579.2452089036424	25.357	0.38456	25.357	25.12	25.504	0	-0.035363	-0.00057817	NaN	1.6526	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72183			23061	8858	13008	13009							-0.0925960434578883
LHFPCVSCDH	10	Unmodified	_LHFPCVSCDH_					0	0	0		ENST00000369244.6_1_6:99374760-99382655:-|nuORF;ENST00000229971.2_1_6:99374760-99395723:-|nuORF	ENST00000369244.6_1_6:99374760-99382655:-|nuORF	ENST00000369244.6_1_6:99374760-99382655:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	579.246969	1156.47938	-0.087382	-5.0616E-05	-2.5927	-0.0015018	-2.6801	-0.0015524	579.2454830068439	25.439	0.41874	25.408	25.181	25.599	-0.03141	0.015915	0.00027897	NaN	1.6526	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79648			23062	8858	13008	13009							-0.0925960434578883
LHFSDRQTL	9	Unmodified	_LHFSDRQTL_					0	0	0			REV__nc|ENSG00000167711|P08697-2|SERPINF2	REV__nc|ENSG00000167711|P08697-2|SERPINF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.80419921875	2	558.793455	1115.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.495	1	16.495	15.995	16.995	0								0	0	0	0.24264	1	1344	1344		8.7454	1.4562	1		+		23063	17406	13009	13010	29209	29209					0.019193597034927734
LHGLRLHTV	9	Unmodified	_LHGLRLHTV_					0	0	0		ENST00000578730.1_1_4:1244819-1245182:+|nuORF	ENST00000578730.1_1_4:1244819-1245182:+|nuORF	ENST00000578730.1_1_4:1244819-1245182:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3056640625	2	523.3169	1044.61925	0.72176	0.00037771	-2.6453	-0.0013843	-1.9235	-0.0010066	523.3155122633514	65.897	0.30429	65.986	65.784	66.088	0.088882					14	10	2	0	0	0	0.24581	1	16486	16486		16.942	3.8998	1	194580			23064	12064	13010	13011	29210	29210					0.0987226404527064
LHGLVTYVIYS	11	Unmodified	_LHGLVTYVIYS_					0	0	0		ENSG00000149124|ENST00000344743|GLYAT	ENSG00000149124|ENST00000344743|GLYAT	ENSG00000149124|ENST00000344743|GLYAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3692626953125	2	632.850438	1263.68632	0.6562	0.00041528	0.29409	0.00018611	0.95029	0.00060139	632.8504184111015	84.674	0.32159	84.662	84.493	84.814	-0.01284					16	12	2	0	0	0	0.32667	1	22231	22231		13.042	2.8919	1	129610			23065	4845	13011	13012	29211	29211					0.06502829745727468
LHGPSPPL	8	Unmodified	_LHGPSPPL_					0	0	0			REV__ENST00000446176.6_1_9:132652446-132652740:-|nuORF	REV__ENST00000446176.6_1_9:132652446-132652740:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.8769226074219	2	409.231971	816.449388	0.57374	0.00023479	-0.8912	-0.00036471	-0.31746	-0.00012991	409.23153451560773	47.417	0.26266	47.464	47.302	47.565	0.046921					13	9	2	0	0	0	0.33618	1	10720	10720		6.3541	0	1	126260	+		23066	21079	13012	13013	29212	29212					0.03382148042840072
LHGSAGGKQGL	11	Unmodified	_LHGSAGGKQGL_					0	0	0		ENST00000592208.5_1_19:10433104-10439782:-|nuORF;nc|ENSG00000161847|Q8IY67|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1	ENST00000592208.5_1_19:10433104-10439782:-|nuORF	ENST00000592208.5_1_19:10433104-10439782:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2413940429688	2	512.780348	1023.54614	0.20286	0.00010402	0.093039	4.7708E-05	0.2959	0.00015173	512.7804266834513	23.981	0.54325	23.981	23.769	24.312	0					45	18	4	0	0	0	0.32855	1	3606	3606		10.8	1.4164	1	185520			23067	5532	13013	13014	29213	29213					0.03531090532010239
LHHHQQSLH	9	Unmodified	_LHHHQQSLH_					0	0	0			REV__ENSG00000091009|ENST00000265271|RBM27	REV__ENSG00000091009|ENST00000265271|RBM27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.788818359375	2	568.789038	1135.56352	-0.099701	-5.6709E-05	0.25946	0.00014758	0.15976	9.0869E-05	568.7890664286278	12.615	0.34887	12.615	12.498	12.847	0					17	11	2	0	0	0	0.34681	1	197	197		1.8442	0	1	43099	+		23068	14054	13014	13015	29214	29214					0.0011643085765626893
LHHNTKRTII	10	Unmodified	_LHHNTKRTII_					0	0	0			REV__ENST00000591083.5_1_18:56530255-56532723:+|nuORF	REV__ENST00000591083.5_1_18:56530255-56532723:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.57855224609375	3	411.578923	1231.71494	0.22627	9.3129E-05	-0.71409	-0.0002939	-0.48781	-0.00020077	411.5786055903579	29.706	0.70045	29.718	29.443	30.143	0.012266					66	23	4	0	0	0	0.35267	1	5372	5372		12.175	0.65687	1	344040	+		23069	20070	13015	13016	29215	29215					0.10834992165518997
LHHNTKRTII	10	Unmodified	_LHHNTKRTII_					0	0	0			REV__ENST00000591083.5_1_18:56530255-56532723:+|nuORF	REV__ENST00000591083.5_1_18:56530255-56532723:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5786437988281	3	411.578923	1231.71494	-0.096775	-3.9831E-05	-0.33583	-0.00013822	-0.4326	-0.00017805	411.5787364973137	29.748	0.72927	29.762	29.507	30.236	0.013474					60	24	3	0	0	0	0.32877	1	5360	5360		16.566	5.048	1	332650	+		23070	20070	13015	13016	29216	29216					0.10834992165518997
LHHNTKRTII	10	Unmodified	_LHHNTKRTII_					0	0	0			REV__ENST00000591083.5_1_18:56530255-56532723:+|nuORF	REV__ENST00000591083.5_1_18:56530255-56532723:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	411.578923	1231.71494	0.10913	4.4916E-05	-0.59459	-0.00024472	-0.48546	-0.00019981	411.57865207242816	29.754	0.59329	29.754	29.441	30.034	0	0.0096989	-0.0001081	NaN	16.566	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333770	+		23071	20070	13015	13016							0.10834992165518997
LHHPFLHPP	9	Unmodified	_LHHPFLHPP_					0	0	0			REV__ENST00000421035.2_3_6:144665272-144665347:+|nuORF	REV__ENST00000421035.2_3_6:144665272-144665347:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2733154296875	2	547.798343	1093.58213	0.22096	0.00012104	-2.2347	-0.0012241	-2.0137	-0.0011031	547.7971958654923	18.966	0.5342	18.966	18.677	19.211	0					27	16	2	0	0	0	0.26117	1	2005	2005		0.6015	0	1	73087	+		23072	20861	13016	13017	29217	29217					0.039085924995106325
LHHQPKSF	8	Unmodified	_LHHQPKSF_					0	0	0			REV__ENST00000373517.3_1_X:72434414-72434678:-|nuORF	REV__ENST00000373517.3_1_X:72434414-72434678:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7799987792969	2	497.266876	992.519199	0.24598	0.00012232	-0.74613	-0.00037102	-0.50015	-0.00024871	497.2672930249817	23.697	0.80152	23.697	23.419	24.22	0					53	27	3	0	0	0	0.34272	1	3494	3494		7.9102	0	1	65017	+		23073	20441	13017	13018	29218	29218					0.022640267114752533
LHIALLVLF	9	Unmodified	_LHIALLVLF_					0	0	0		nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;CACNA1C|p.V939Ffs*12|1|0.13|ENSG00000151067|chr12:2597251-2597251|G/-|frameshift_variant	nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7960815429688	2	519.839146	1037.66374	0.53442	0.00027781	-3.6026	-0.0018728	-3.0682	-0.001595	519.8372393919171	41.891	0.54756	41.988	41.87	42.418	0.096622					32	18	2	0	0	0	0.25291	1	9034	9034		9.3474	0	1	322700			23074	4934;5302	13018	13019	29219	29219					0.14641275138751553
LHIGFPTDI	9	Unmodified	_LHIGFPTDI_					0	0	0		ENST00000427826.1_1_6:33383087-33383872:+|nuORF;ENST00000479029.1_1_6:33383289-33383872:+|nuORF;ENST00000486845.1_1_6:33382534-33383872:+|nuORF;ENSG00000112511|ENST00000374516|PHF1	ENST00000427826.1_1_6:33383087-33383872:+|nuORF	ENST00000427826.1_1_6:33383087-33383872:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2873840332031	2	506.776742	1011.53893	-0.096239	-4.8771E-05	0.30731	0.00015574	0.21107	0.00010697	506.7769179606685	65.211	0.71907	65.3	64.958	65.677	0.088882					31	23	2	0	0	0	0.22596	1	16163	16163		21.747	10.106	1	189810			23075	2438	13019	13020	29220	29220					0.03362357931564475
LHINKMHKVL	10	Unmodified	_LHINKMHKVL_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.8697814941406	3	411.581387	1231.72233	-0.29436	-0.00012115	0.14185	5.8382E-05	-0.15251	-6.2771E-05	411.5812316842536	22.954	0.14319	22.954	22.904	23.047	0					5	4	2	0	0	0	0.3213	1	3288	3288		1.9064	0.9441	1	14182	+		23076	15965	13020	13021	29221	29221					0.11574008441562
LHIVPCKHV	9	Unmodified	_LHIVPCKHV_					0	0	0		ENSG00000127578|ENST00000319070|WFIKKN1	ENSG00000127578|ENST00000319070|WFIKKN1	ENSG00000127578|ENST00000319070|WFIKKN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2584838867188	2	523.302404	1044.59026	0.16679	8.7282E-05	1.3797	0.00072203	1.5465	0.00080931	523.303150411796	14.625	0.45671	14.52	14.396	14.853	-0.10466					23	15	2	0	0	0	0.24311	1	829	829		16.942	9.0321	1	66288			23077	3329	13021	13022	29222	29222					0.06974403424624143
LHIYYRLLLIW	11	Unmodified	_LHIYYRLLLIW_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.6343688964844	3	501.634257	1501.88094	0.25274	0.00012678	-0.031982	-1.6043E-05	0.22075	0.00011074	501.6342408906352	93.203	0.99945	93.203	92.627	93.626	0					297	87	5	0	0	0	0.48486	1	24914	24914		0.094841	0	1	1228800	+		23078	18559	13022	13023	29223	29223					0.15007625621524312
LHKDTSRLY	9	Unmodified	_LHKDTSRLY_					0	0	0		ENSG00000110203|ENST00000611028|FOLR3;ENSG00000165457|ENST00000298223|FOLR2	ENSG00000110203|ENST00000611028|FOLR3	ENSG00000110203|ENST00000611028|FOLR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3272705078125	2	566.809105	1131.60366	0.62319	0.00035323	1.3739	0.00077874	1.9971	0.001132	566.8098730145291	50.1	1.5949	50.121	49.511	51.106	0.020691					158	59	4	0	0	0	0.25291	1	11864	11864		9.3474	0.75416	1	6205200			23079	2301	13023	13024	29224	29224					0.04311932737573443
LHKSLCKLV	9	Unmodified	_LHKSLCKLV_					0	0	0			REV__ENSG00000101353|ENST00000343811|MROH8	REV__ENSG00000101353|ENST00000343811|MROH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2785034179688	2	520.817887	1039.62122	0.69525	0.0003621	-1.6293	-0.00084858	-0.93407	-0.00048648	521.3187394843657	47.605	0.15892	47.648	47.561	47.72	0.04332					6	5	2	0	0	0	0.25706	1	10792	10792		6.7232	0.51738	1	115060	+		23080	14267	13024	13025	29225	29225					0.10299556738868887
LHKTGGYTFP	10	Unmodified	_LHKTGGYTFP_					0	0	0		ENST00000497875.1_1_3:52351910-52355744:+|nuORF	ENST00000497875.1_1_3:52351910-52355744:+|nuORF	ENST00000497875.1_1_3:52351910-52355744:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2853393554688	2	560.792924	1119.57129	0.42039	0.00023575	0.20346	0.0001141	0.62386	0.00034985	560.7928479490438	54.202	0.54438	54.186	53.978	54.522	-0.015923					28	18	3	0	0	0	0.3156	1	12937	12937		6.7232	0	1	216840			23081	11250	13025	13026	29226	29226					0.016291453345957052
LHLDIHWLV	9	Unmodified	_LHLDIHWLV_					0	0	0		ENST00000506256.5_1_6:97707503-97720651:-|nuORF;ENST00000511335.5_1_6:97715738-97720957:-|nuORF;ENST00000509383.5_1_6:97679279-97717985:-|nuORF;ENST00000508976.5_1_6:97702357-97730353:-|nuORF;ENSG00000146263|ENST00000683635|MMS22L	ENST00000506256.5_1_6:97707503-97720651:-|nuORF	ENST00000506256.5_1_6:97707503-97720651:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.8092041015625	2	573.326934	1144.63931	0.39841	0.00022842	-0.21175	-0.0001214	0.18666	0.00010702	573.3266425867369	45.472	0.42734	45.537	45.384	45.811	0.065048					20	15	2	0	0	0	0.24739	1	10110	10110		8.5933	0.68312	1	214140			23082	4703	13026	13027	29227	29227					0.07278014985217851
LHLGWFFP	8	Unmodified	_LHLGWFFP_					0	0	0			REV__ENST00000220592.9_2_8:141540658-141540805:-|nuORF	REV__ENST00000220592.9_2_8:141540658-141540805:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3061828613281	2	508.771263	1015.52797	0.50597	0.00025742	-1.431	-0.00072806	-0.92504	-0.00047063	508.7704412394312	82.834	0.66089	82.834	82.513	83.174	0					41	24	2	0	0	0	0.33618	1	21659	21659		11.114	0	1	274230	+		23083	19425	13027	13028	29228	29228					0.02083000347943198
LHLHPAAEHLS	11	Unmodified	_LHLHPAAEHLS_					0	0	0			REV__ENSG00000187634|ENST00000616016|SAMD11	REV__ENSG00000187634|ENST00000616016|SAMD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.8059692382812	2	612.827829	1223.64111	0.61638	0.00037774	-1.9602	-0.0012013	-1.3439	-0.00082355	612.8265268167577	60.542	0.51192	60.533	60.326	60.838	-0.0094566					29	18	2	0	0	0	0.42346	1	14894	14894		8.1555	0.24537	1	712220	+		23084	18511	13028	13029	29229	29229					0.038230240031680296
LHLLQTRSLNA	11	Unmodified	_LHLLQTRSLNA_					0	0	0			REV__nc|ENSG00000128607|Q6PID8-2|KLHDC10	REV__nc|ENSG00000128607|Q6PID8-2|KLHDC10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.59503173828125	3	422.582333	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.54	1	104.55	104.05	105.05	0.0018463								0	0	0	0.37501	1	27760	27760		1.1098	0.24538	1		+		23085	15379	13029	13030	29230	29230					0.10339555100085818
LHLLWRWPRLG	11	Unmodified	_LHLLWRWPRLG_					0	0	0			REV__ENST00000392474.6_1_12:121677959-121678241:-|nuORF	REV__ENST00000392474.6_1_12:121677959-121678241:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2765197753906	3	482.954212	1445.84081	0.50031	0.00024163	-1.3262	-0.00064047	-0.82584	-0.00039884	482.9537935031785	58.689	0.33516	58.674	58.496	58.831	-0.014267					12	11	2	0	0	0	0.3333	1	14278	14278		1.3296	0.11481	1	187860	+		23086	20593	13030	13031	29231	29231					0.13572123741596442
LHLPEPHIF	9	Unmodified	_LHLPEPHIF_					0	0	0		nc|ENSG00000204604|Q5VIY5-2|ZNF468;ENSG00000204604|ENST00000595646|ZNF468	nc|ENSG00000204604|Q5VIY5-2|ZNF468	nc|ENSG00000204604|Q5VIY5-2|ZNF468	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8057250976562	2	551.805834	1101.59712	0.53139	0.00029322	0.19951	0.00011009	0.7309	0.00040332	551.805734486749	64.471	1.2451	64.461	64.045	65.29	-0.0095291					93	45	3	0	0	0	0.21303	1	15957	15957		21.747	21.747	1	1005500			23087	8244	13031	13032	29232	29232					0.05038039576857045
LHLQHQNVT	9	Unmodified	_LHLQHQNVT_					0	0	0		ENST00000480137.1_1_7:128446747-128451900:+|nuORF;nc|ENSG00000128596|Q96JN2-2|CCDC136;ENSG00000128596|ENST00000297788|CCDC136;nc|ENSG00000128596|Q96JN2-4|CCDC136	ENST00000480137.1_1_7:128446747-128451900:+|nuORF	ENST00000480137.1_1_7:128446747-128451900:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2937622070312	2	545.293622	1088.57269	0.27078	0.00014766	0.1185	6.4617E-05	0.38928	0.00021227	545.2936794154216	23.348	0.58919	23.348	23.11	23.699	0					29	20	2	0	0	0	0.32733	1	3453	3453		4.756	0	1	93022			23088	3379	13032	13033	29233	29233					0.031947794233246896
LHLSPTRRRL	10	Unmodified	_LHLSPTRRRL_					0	0	0			REV__ENST00000320785.9_1_17:4903608-4904652:+|nuORF	REV__ENST00000320785.9_1_17:4903608-4904652:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.5610656738281	3	416.926434	1247.75747	-0.14134	-5.8928E-05	-2.2715	-0.00094705	-2.4129	-0.001006	416.9256894571795	35.5	0.4184	35.586	35.45	35.869	0.086246					17	14	2	0	0	0	0.31538	1	7094	7094		12.873	5.3955	1	151820	+		23089	19962	13033	13034	29234	29234					0.14350387293734457
LHLVVDELHI	10	Unmodified	_LHLVVDELHI_					0	0	0			REV__nc|ENSG00000165533|Q8TAM2|TTC8	REV__nc|ENSG00000165533|Q8TAM2|TTC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.85595703125	2	594.342781	1186.67101	0.54672	0.00032494	0.83495	0.00049625	1.3817	0.00082119	594.343308461466	68.81	0.30811	68.81	68.643	68.951	0					14	10	2	0	0	0	0.31745	1	17364	17364		7.9102	0	1	53757	+		23090	23073	13034	13035	29235	29235					0.08513962948518383
LHLWDQWFR	9	Unmodified	_LHLWDQWFR_					0	0	0		ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	ENSG00000179933|ENST00000319074|C14orf119	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.5751647949219	3	434.224368	1299.65128	-0.074921	-3.2532E-05	1.4017	0.00060864	1.3268	0.00057611	434.22476569026634	33.193	0.25072	33.249	33.143	33.394	0.055309					10	8	2	0	0	0	0.25123	1	6448	6448		8.1555	3.2585	1	80649			23091	7157	13035	13036	29236	29236					0.013436317283776589
LHLWLYTWLKL	11	Unmodified	_LHLWLYTWLKL_					0	0	0			REV__ENST00000360565.7_2_19:50161652-50161889:+|nuORF	REV__ENST00000360565.7_2_19:50161652-50161889:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.9588623046875	3	495.958741	1484.85439	0.36797	0.0001825	0.098669	4.8936E-05	0.46664	0.00023143	495.95873421909374	93.09	2.4977	93.179	91.597	94.095	0.089195					652	192	4	0	0	0	0.48173	3	24838	24838;24878;24922		0.50596	0.50596	1	2395400	+		23092	20260	13036	13037	29237;29238;29239	29237					0.13135936730168396
LHLWLYTWLKL	11	Unmodified	_LHLWLYTWLKL_					0	0	0			REV__ENST00000360565.7_2_19:50161652-50161889:+|nuORF	REV__ENST00000360565.7_2_19:50161652-50161889:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.9588928222656	3	495.958741	1484.85439	0.49214	0.00024408	0.036058	1.7883E-05	0.5282	0.00026197	495.958706288603	93.173	1.4841	93.172	92.607	94.091	-0.00051117					440	123	4	0	0	0	0.4745	3	24880	24880;24921;24962		1.4551	1.4551	1	2631100	+		23093	20260	13036	13037	29240;29241;29242	29240					0.13135936730168396
LHPDIEFI	8	Unmodified	_LHPDIEFI_					0	0	0			REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2640075683594	2	492.263468	982.512382	0.47497	0.00023381	0.51864	0.00025531	0.99361	0.00048912	492.26403891990543	58.444	1.9888	58.444	58.046	60.035	0					250	69	6	0	0	0	0.28861	1	14511	14511		32.117	3.0354	1	59675000	+		23094	14571	13037	13038	29243	29243					0.02042669040235978
LHPDPSKTPHP	11	Unmodified	_LHPDPSKTPHP_					0	0	0		ENSG00000261949|ENST00000610896|GFY	ENSG00000261949|ENST00000610896|GFY	ENSG00000261949|ENST00000610896|GFY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.555419921875	3	409.21565	1224.62512	-0.14646	-5.9934E-05	-0.4787	-0.00019589	-0.62516	-0.00025583	409.2155520769237	18.031	0.66269	17.972	17.678	18.341	-0.058174					37	23	2	0	0	0	0.33296	1	1749	1749		2.6312	0.54727	1	100560			23095	8665	13038	13039	29244	29244					0.021793177662630114
LHPDQQRPR	9	Unmodified	_LHPDQQRPR_					0	0	0			REV__ENSG00000105617|ENST00000222224|LENG1	REV__ENSG00000105617|ENST00000222224|LENG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.9609985351562	2	573.809971	1145.60539	-0.051526	-2.9566E-05	-0.28403	-0.00016298	-0.33556	-0.00019255	573.8100906997531	15.201	0.49353	15.137	14.898	15.391	-0.064413					25	16	3	0	0	0	0.25938	1	897	897		4.3292	0.38484	1	77043	+		23096	14468	13039	13040	29245	29245					0.03840986546174463
LHPDQQRPR	9	Unmodified	_LHPDQQRPR_					0	0	0			REV__ENSG00000105617|ENST00000222224|LENG1	REV__ENSG00000105617|ENST00000222224|LENG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	573.809971	1145.60539	-0.063701	-3.6553E-05	0.24944	0.00014313	0.18574	0.00010658	573.8101717208938	14.987	0.44343	14.987	14.789	15.232	0	-0.058711	0.00033591	NaN	4.3292	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98166	+		23097	14468	13039	13040							0.03840986546174463
LHPGADATHP	10	Unmodified	_LHPGADATHP_					0	0	0		nc|ENSG00000122741|Q5QP82-2|DCAF10;ENSG00000122741|ENST00000377724|DCAF10	nc|ENSG00000122741|Q5QP82-2|DCAF10	nc|ENSG00000122741|Q5QP82-2|DCAF10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.6692199707031	2	508.251423	1014.48829	-0.017279	-8.7818E-06	-2.4851	-0.0012631	-2.5024	-0.0012718	508.749938619005	18.328	0.28728	18.27	18.145	18.432	-0.058174					18	9	3	0	0	0	0.31847	1	1902	1902		6.7232	1.4925	1	41666			23098	3068	13040	13041	29246	29246					-0.01837171393447079
LHPKLVPL	8	Unmodified	_LHPKLVPL_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.2690124511719	2	458.802563	915.590573	0.36605	0.00016795	-0.1544	-7.0838E-05	0.21166	9.7108E-05	458.8024184480447	45.631	0.96194	45.631	45.041	46.003	0					60	34	3	0	0	0	0.34092	1	10185	10185		13.508	0	1	319150	+		23099	13706	13041	13042	29247	29247					0.12940146416133302
LHPKPRLLRR	10	Unmodified	_LHPKPRLLRR_					0	0	0		ENST00000569802.5_1_16:56485450-56487286:+|nuORF	ENST00000569802.5_1_16:56485450-56487286:+|nuORF	ENST00000569802.5_1_16:56485450-56487286:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.273193359375	3	429.282441	1284.82549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.159	1	97.153	96.653	97.653	-0.0055466								0	0	0	0.38197	1	26004	26004		0.69767	0.24315	1				23100	12012	13042	13043	29248	29248					0.19447256944386027
LHPSWPRPALF	11	Unmodified	_LHPSWPRPALF_					0	0	0		ENST00000565981.5_1_16:58539993-58546041:+|nuORF	ENST00000565981.5_1_16:58539993-58546041:+|nuORF	ENST00000565981.5_1_16:58539993-58546041:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.2345275878906	3	440.911902	1319.71388	-1.1275	-0.00049714	1.9264	0.00084939	0.79892	0.00035225	440.91285687321607	34.77	0.63963	34.77	34.277	34.917	0					34	22	2	0	0	0	0.33146	1	6923	6923		6.6235	0.84002	1	143840			23101	11974	13043	13044	29249	29249					0.06680777796600523
LHQALRLY	8	Unmodified	_LHQALRLY_					0	0	0			REV__ENSG00000204767|ENST00000377365|INSYN2B	REV__ENSG00000204767|ENST00000377365|INSYN2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.3094787597656	2	507.298176	1012.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.509	1	93.596	93.096	94.096	0.08667								0	0	0	0.36336	1	24907	24907		8.5933	1.304	1		+		23102	18964	13044	13045	29250	29250					0.07601172779652643
LHQALRLY	8	Unmodified	_LHQALRLY_					0	0	0			REV__ENSG00000204767|ENST00000377365|INSYN2B	REV__ENSG00000204767|ENST00000377365|INSYN2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.3099060058594	2	507.298176	1012.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.455	1	95.452	94.952	95.952	-0.0038147								0	0	0	0.35251	1	25501	25501		13.508	4.1604	1		+		23103	18964	13044	13045	29251	29251					0.07601172779652643
LHQEPGLVL	9	Unmodified	_LHQEPGLVL_					0	0	0			REV__ENST00000372564.7_1_9:131770089-131770917:-|nuORF	REV__ENST00000372564.7_1_9:131770089-131770917:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.2790222167969	2	503.290017	1004.56548	0.44495	0.00022394	-0.066236	-3.3336E-05	0.37871	0.0001906	503.28998499289145	43.094	0.57014	43.179	42.891	43.461	0.085197					37	20	2	0	0	0	0.25526	1	9349	9349		1.8442	0	1	866550	+		23104	20414	13045	13046	29252	29252					0.06338046822895649
LHQFARQYL	9	Unmodified	_LHQFARQYL_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.350341796875	2	588.31964	1174.62473	0.43824	0.00025782	0.10112	5.949E-05	0.53936	0.00031732	588.3196851694245	36.683	0.73171	36.771	36.516	37.247	0.08741					68	26	3	0	0	0	0.25066	1	7601	7601		11.64	0	1	1392500	+		23105	19226	13046	13047	29253	29253					0.044399428370979876
LHQLHKEQQ	9	Unmodified	_LHQLHKEQQ_					0	0	0			REV__nc|ENSG00000122952|O95229-2|ZWINT	REV__nc|ENSG00000122952|O95229-2|ZWINT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3339233398438	2	580.812179	1159.60981	0.10367	6.021E-05	-0.054125	-3.1436E-05	0.049541	2.8774E-05	580.8121378786174	23.518	0.36298	23.518	23.336	23.699	0					23	12	3	0	0	0	0.259	1	3425	3425		5.2969	1.4206	1	50081	+		23106	15175	13047	13048	29254	29254					0.03638450969083351
LHQLHKEQQ	9	Unmodified	_LHQLHKEQQ_					0	0	0			REV__nc|ENSG00000122952|O95229-2|ZWINT	REV__nc|ENSG00000122952|O95229-2|ZWINT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	580.812179	1159.60981	0.18846	0.00010946	-0.018193	-1.0567E-05	0.17026	9.8891E-05	580.8119222924428	23.649	0.36053	23.576	23.368	23.728	-0.072559	-0.0099783	0.00020981	NaN	5.2969	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88584	+		23107	15175	13047	13048							0.03638450969083351
LHQLHKEQQ	9	Unmodified	_LHQLHKEQQ_					0	0	0			REV__nc|ENSG00000122952|O95229-2|ZWINT	REV__nc|ENSG00000122952|O95229-2|ZWINT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	580.812179	1159.60981	0.35791	0.00020788	-0.41113	-0.00023879	-0.053216	-3.0909E-05	580.8119476149722	23.704	0.36991	23.665	23.45	23.82	-0.038927	0.078151	-0.00024663	NaN	5.2969	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84066	+		23108	15175	13047	13048							0.03638450969083351
LHQLQAAP	8	Unmodified	_LHQLQAAP_					0	0	0			REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.2479248046875	2	439.248152	876.481751	-0.093254	-4.0962E-05	-0.26062	-0.00011448	-0.35388	-0.00015544	439.24788191186263	25.802	1.0528	25.779	25.328	26.381	-0.022236					87	37	3	0	0	0	0.4419	1	4204	4204		8.5933	0.68312	1	1037400	+		23109	16032	13048	13049	29255	29255					0.03856935445844556
LHRGDPVWRL	10	Unmodified	_LHRGDPVWRL_					0	0	0			REV__ENST00000488829.1_1_9:89626569-89628063:+|nuORF	REV__ENST00000488829.1_1_9:89626569-89628063:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.9035339355469	3	416.903518	1247.68872	0.19962	8.3221E-05	-0.27024	-0.00011266	-0.070621	-2.9442E-05	416.9034475196682	19.558	1.3783	19.502	18.848	20.227	-0.055693					160	48	5	0	0	0	0.36015	1	2441	2441		6.6235	2.2173	1	1918200	+		23110	21582	13049	13050	29256	29256					0.0747872299402843
LHRHWYANLFL	11	Unmodified	_LHRHWYANLFL_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.29010009765625	3	490.598206	1468.77279	0.3531	0.00017323	1.476	0.00072412	1.8291	0.00089736	490.599257163974	32.621	0.16198	32.675	32.603	32.765	0.054371					7	5	2	0	0	0	0.33326	1	6236	6236		1.4551	0.12547	1	66481	+		23111	16009	13050	13051	29257	29257					0.05715254090932831
LHRKPKLGQEL	11	Unmodified	_LHRKPKLGQEL_					0	0	0		nc|ENSG00000133059|Q6XUX3-4|DSTYK;DSTYK|p.Y700*|1|0.28|ENSG00000133059|chr1:205160119-205160119|A/-|frameshift_variant;nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK	nc|ENSG00000133059|Q6XUX3-4|DSTYK	nc|ENSG00000133059|Q6XUX3-4|DSTYK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.2698974609375	3	440.269978	1317.7881	0.069373	3.0543E-05	-0.022014	-9.6922E-06	0.047359	2.0851E-05	440.2699183018077	44.049	0.69976	44.049	43.793	44.493	0					73	25	4	0	0	0	0.42246	1	9779	9779		8.2864	0.34103	1	2317500			23112	274	13051	13052	29258	29258					0.14192120888128557
LHRLKKTLS	9	Unmodified	_LHRLKKTLS_					0	0	0			REV__ENSG00000174373|ENST00000680220|RALGAPA1;REV__nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	REV__ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.282470703125	2	548.353483	1094.69241	0.50881	0.00027901	0.13916	7.6308E-05	0.64797	0.00035532	548.3533775508055	42.949	0.48325	43.034	42.731	43.214	0.085197					40	17	3	0	0	0	0.25526	1	9345	9345		7.9102	0	1	521670	+		23113	17829;18557	13052	13053	29259	29259					0.14885392767905614
LHRLKKTLS	9	Unmodified	_LHRLKKTLS_					0	0	0			REV__ENSG00000174373|ENST00000680220|RALGAPA1;REV__nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	REV__ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.2827758789062	2	548.353483	1094.69241	0.27541	0.00015102	0.1135	6.224E-05	0.38891	0.00021326	548.3533776722269	42.842	0.61409	42.933	42.691	43.305	0.091362					41	22	3	0	0	0	0.25526	1	9317	9317		7.9102	0	1	476050	+		23114	17829;18557	13052	13053	29260	29260					0.14885392767905614
LHRLLNMLT	9	Unmodified	_LHRLLNMLT_					0	0	0			REV__ENST00000513752.5_1_4:183064608-183064957:-|nuORF	REV__ENST00000513752.5_1_4:183064608-183064957:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8403930664062	2	555.826243	1109.63793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.519	1	33.585	33.085	34.085	0.066704								0	0	0	0.25631	1	6505	6505		4.3292	0.38484	1		+		23115	21829	13053	13054	29261	29261					0.08750057624843066
LHRRRRWW	8	Unmodified	_LHRRRRWW_					0	0	0		ENST00000297293.5_1_7:97832983-97833265:+|nuORF	ENST00000297293.5_1_7:97832983-97833265:+|nuORF	ENST00000297293.5_1_7:97832983-97833265:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3684692382812	2	633.365582	1264.71661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.3	1	118.33	117.83	118.83	0.026253								0	0	0	0.37992	1	30637	30637		0.79363	0.19213	1				23116	9198	13054	13055	29262	29262					0.09484090764794928
LHRWRSRTQPR	11	Unmodified	_LHRWRSRTQPR_					0	0	0			REV__ENST00000313431.13_2_1:144932113-144932161:-|nuORF	REV__ENST00000313431.13_2_1:144932113-144932161:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7536315917969	3	498.283392	1491.82835	0.16699	8.3209E-05	1.4254	0.00071024	1.5924	0.00079345	498.2840078143387	23.145	0.39794	23.145	23.021	23.419	0					18	13	2	0	0	0	0.33347	1	3412	3412		0.45452	0.046251	1	50002	+		23117	19918	13055	13056	29263	29263					0.10210480331261351
LHSDTIIAL	9	Unmodified	_LHSDTIIAL_					0	0	0			REV__ENSG00000094661|ENST00000641398|OR1I1	REV__ENSG00000094661|ENST00000641398|OR1I1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7822570800781	2	491.782025	981.549496	0.37594	0.00018488	-2.2382	-0.0011007	-1.8623	-0.00091584	491.78175774271546	70.523	1.192	70.523	70.183	71.375	0					55	42	2	0	0	0	0.1669	1	17897	17897		28.487	4.2769	1	328980	+		23118	14091	13056	13057	29264	29264					0.05798340585999995
LHSILHKRGS	10	Unmodified	_LHSILHKRGS_					0	0	0		ENST00000589000.5_1_18:77694015-77695438:-|nuORF	ENST00000589000.5_1_18:77694015-77695438:-|nuORF	ENST00000589000.5_1_18:77694015-77695438:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.2759399414062	2	574.338364	1146.66217	0.33908	0.00019475	-1.1861	-0.00068123	-0.84704	-0.00048649	574.337580840024	87.87	0.57749	87.867	87.463	88.041	-0.0028458					47	31	2	0	0	0	0.32054	1	23082	23082		3.2813	1.2216	1	119360			23119	12154	13057	13058	29265	29265					0.0947103410269392
LHSILHKRGS	10	Unmodified	_LHSILHKRGS_					0	0	0		ENST00000589000.5_1_18:77694015-77695438:-|nuORF	ENST00000589000.5_1_18:77694015-77695438:-|nuORF	ENST00000589000.5_1_18:77694015-77695438:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	574.338364	1146.66217	0.38583	0.0002216	-1.0255	-0.00058898	-0.63967	-0.00036739	574.3377229353961	87.706	0.66092	87.706	87.416	88.077	0	-0.042937	8.046E-05	NaN	3.2813	54	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115280			23120	12154	13057	13058							0.0947103410269392
LHSILHKRGS	10	Unmodified	_LHSILHKRGS_					0	0	0		ENST00000589000.5_1_18:77694015-77695438:-|nuORF	ENST00000589000.5_1_18:77694015-77695438:-|nuORF	ENST00000589000.5_1_18:77694015-77695438:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	574.338364	1146.66217	0.41373	0.00023762	-1.0837	-0.00062243	-0.67	-0.00038481	574.3374570528297	87.586	0.66212	87.673	87.387	88.05	0.08709	-0.075415	1.3572E-05	NaN	3.2813	61	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106180			23121	12154	13057	13058							0.0947103410269392
LHSKYRFSKR	10	Unmodified	_LHSKYRFSKR_					0	0	0			REV__ENSG00000152443|ENST00000317178|ZNF776	REV__ENSG00000152443|ENST00000317178|ZNF776	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.742431640625	3	441.254439	1320.74149	0.38507	0.00016992	-0.85221	-0.00037604	-0.46713	-0.00020612	441.25410970966277	32.244	0.9124	32.244	31.953	32.865	0					81	32	4	0	0	0	0.32082	1	6056	6056		1.5923	1.5923	1	413910	+		23122	16576	13058	13059	29266	29266					0.09394681056824083
LHSRIPVTQ	9	Unmodified	_LHSRIPVTQ_					0	0	0			REV__SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	REV__SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.819091796875	2	525.806365	1049.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.47	1	34.47	33.97	34.97	0								0	0	0	0.21673	1	6800	6800		17.113	4.5813	1		+		23123	16772	13059	13060	29267	29267					0.07536253945772842
LHSRIPVTQ	9	Unmodified	_LHSRIPVTQ_					0	0	0			REV__SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	REV__SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8189697265625	2	525.806365	1049.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.376	1	34.443	33.943	34.943	0.06636								0	0	0	0.18639	1	6772	6772		26.268	10.421	1		+		23124	16772	13059	13060	29268	29268					0.07536253945772842
LHSRIPVTQ	9	Unmodified	_LHSRIPVTQ_					0	0	0			REV__SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	REV__SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8175048828125	2	525.806365	1049.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.639	1	34.714	34.214	35.214	0.075306								0	0	0	0.21673	1	6852	6852		17.113	1.2657	1		+		23125	16772	13059	13060	29269	29269					0.07536253945772842
LHSRIPVTQ	9	Unmodified	_LHSRIPVTQ_					0	0	0			REV__SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	REV__SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.81884765625	2	525.806365	1049.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.324	1	34.391	33.891	34.891	0.066704								0	0	0	0.21673	1	6750	6750		17.113	2.2746	1		+		23126	16772	13059	13060	29270	29270					0.07536253945772842
LHSWSAQTWA	10	Unmodified	_LHSWSAQTWA_					0	0	0			REV__ENST00000361171.7_1_9:129267584-129267776:+|nuORF	REV__ENST00000361171.7_1_9:129267584-129267776:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.785400390625	2	593.78563	1185.55671	0.43112	0.00025599	-0.39962	-0.00023729	0.0315	1.8704E-05	593.785241463846	82.179	2.4243	82.248	81.44	83.865	0.068993					179	99	2	0	0	0	0.39227	1	21608	21608		4.897	0.95262	1	804010	+		23127	20276	13060	13061	29271	29271					-0.028649268135723105
LHTDQNTDF	9	Unmodified	_LHTDQNTDF_					0	0	0			REV__ENSG00000182179|ENST00000333486|UBA7	REV__ENSG00000182179|ENST00000333486|UBA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.31689453125	2	545.743628	1089.4727	0.52381	0.00028586	0.99615	0.00054364	1.52	0.0008295	545.7443595779895	82.159	0.40006	82.228	82.069	82.469	0.068993					22	16	2	0	0	0	0.25066	1	21487	21487		3.9444	0	1	143930	+		23128	18181	13061	13062	29272	29272					-0.06845502701139594
LHTDQNTDF	9	Unmodified	_LHTDQNTDF_					0	0	0			REV__ENSG00000182179|ENST00000333486|UBA7	REV__ENSG00000182179|ENST00000333486|UBA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.31689453125	2	545.743628	1089.4727	0.65603	0.00035802	0.31652	0.00017274	0.97255	0.00053076	545.7437419633621	82.624	0.60054	82.697	82.378	82.979	0.07309					36	23	2	0	0	0	0.25066	1	21487	21487		3.9444	0.3479	1	211050	+		23129	18181	13061	13062	29273	29273					-0.06845502701139594
LHTDQNTDF	9	Unmodified	_LHTDQNTDF_					0	0	0			REV__ENSG00000182179|ENST00000333486|UBA7	REV__ENSG00000182179|ENST00000333486|UBA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3167114257812	2	545.743628	1089.4727	0.67465	0.00036818	0.77506	0.00042298	1.4497	0.00079117	545.7441772252263	82.373	0.43638	82.352	82.061	82.497	-0.020584					20	16	2	0	0	0	0.25622	1	21469	21469		3.9444	1.0552	1	197770	+		23130	18181	13061	13062	29274	29274					-0.06845502701139594
LHTDQNTDF	9	Unmodified	_LHTDQNTDF_					0	0	0			REV__ENSG00000182179|ENST00000333486|UBA7	REV__ENSG00000182179|ENST00000333486|UBA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3167114257812	2	545.743628	1089.4727	0.71823	0.00039197	0.0011787	6.4327E-07	0.71941	0.00039261	545.7434478099105	82.69	0.7568	82.67	82.45	83.207	-0.020576					40	29	2	0	0	0	0.25622	1	21523	21523		7.2892	0.56607	1	195360	+		23131	18181	13061	13062	29275	29275					-0.06845502701139594
LHTMQGKLIML	11	Unmodified	_LHTMQGKLIML_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.3621826171875	2	642.861969	1283.70938	0.23979	0.00015415	0.71742	0.0004612	0.95721	0.00061535	642.8619358400954	105.03	0.098457	105.03	104.97	105.07	0.0018463					18	13	2	0	0	0	0.33149	1	27851	27851		5.2969	2.5617	1	93562	+		23132	14066	13062	13063	29276	29276					0.0788780926718573
LHTMQGKLIML	11	Unmodified	_LHTMQGKLIML_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	642.861969	1283.70938	-0.006604	-4.2454E-06	1.8747	0.0012052	1.8681	0.0012009	642.8625996154595	104.69	0.11091	104.69	104.63	104.74	0	-0.16691	0.00046688	NaN	5.2969	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78050	+		23133	14066	13062	13063							0.0788780926718573
LHTNTPSI	8	Unmodified	_LHTNTPSI_					0	0	0		nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2	nc|ENSG00000100239|O75170-6|PPP6R2	nc|ENSG00000100239|O75170-6|PPP6R2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.75	2	441.737617	881.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.356	1	52.356	51.856	52.856	0								0	0	0	0.29147	1	12286	12286		30.225	0	1				23134	1549	13063	13064	29277	29277					0.015209253463240202
LHTSYKNLEK	10	Unmodified	_LHTSYKNLEK_					0	0	0			REV__nc|ENSG00000076944|Q15833-2|STXBP2	REV__nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.8357543945312	2	616.83532	1231.65609	0.3232	0.00019936	0.029001	1.7889E-05	0.3522	0.00021725	616.8353260504009	36.067	1.459	36.067	35.604	37.063	0					147	52	5	0	0	0	0.2361	3	7246	7246;7345;7396		36.127	15.712	1	7398900	+		23135	13835	13064	13065	29278;29279;29280	29278					0.04952471080514442
LHTSYKNLEK	10	Unmodified	_LHTSYKNLEK_					0	0	0			REV__nc|ENSG00000076944|Q15833-2|STXBP2	REV__nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.8355712890625	2	616.83532	1231.65609	0.28159	0.00017369	0.075176	4.6371E-05	0.35676	0.00022006	616.8353403001603	35.938	1.2121	36.02	35.624	36.836	0.082355					119	43	5	0	0	0	0.27239	3	7204	7204;7301;7365		34.402	4.5611	1	8224300	+		23136	13835	13064	13065	29281;29282;29283	29281					0.04952471080514442
LHTSYKNLEK	10	Unmodified	_LHTSYKNLEK_					0	0	0			REV__nc|ENSG00000076944|Q15833-2|STXBP2	REV__nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.8357543945312	2	616.83532	1231.65609	0.40151	0.00024766	-0.048542	-2.9942E-05	0.35296	0.00021772	616.8353051348573	35.913	1.1357	35.999	35.73	36.865	0.08625					125	40	5	0	0	0	0.25422	1	7295	7295		30.637	7.9003	1	8295600	+		23137	13835	13064	13065	29284	29284					0.04952471080514442
LHTWRKSIPSV	11	Unmodified	_LHTWRKSIPSV_					0	0	0			REV__nc|ENSG00000132958|Q6XPS3-4|TPTE2	REV__nc|ENSG00000132958|Q6XPS3-4|TPTE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.56903076171875	3	441.922578	1322.7459	-0.084901	-3.752E-05	-4.0855	-0.0018055	-4.1704	-0.001843	441.92130436217093	16.262	0.72641	16.148	15.635	16.362	-0.11434					37	24	2	0	0	0	0.3331	1	1337	1337		2.2527	0.66045	1	56662	+		23138	22989	13065	13066	29285	29285					0.09744145479749022
LHTYRQPVSL	10	Unmodified	_LHTYRQPVSL_					0	0	0			REV__ENST00000489369.5_1_9:676972-732786:+|nuORF	REV__ENST00000489369.5_1_9:676972-732786:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2276306152344	3	405.227779	1212.66151	0.0073922	2.9955E-06	0.21101	8.5508E-05	0.2184	8.8503E-05	405.22776874215964	45.117	0.64902	45.117	44.909	45.558	0					52	23	3	0	0	0	0.31396	1	10067	10067		18.721	0.34813	1	706460	+		23139	21588	13066	13067	29286	29286					0.063681946629913
LHVIARDF	8	Unmodified	_LHVIARDF_					0	0	0		nc|ENSG00000169379|Q3SXY8-2|ARL13B;nc|ENSG00000169379|Q3SXY8-3|ARL13B;ENSG00000169379|ENST00000394222|ARL13B	nc|ENSG00000169379|Q3SXY8-2|ARL13B	nc|ENSG00000169379|Q3SXY8-2|ARL13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.30804443359375	2	485.777077	969.5396	-0.029069	-1.4121E-05	-3.906	-0.0018974	-3.9351	-0.0019116	485.77506175042544	12.353	0.14675	12.256	12.148	12.295	-0.096607					11	4	3	0	0	0	0.344	1	76	76		2.5775	0.27475	1	60650			23140	6353	13067	13068	29287	29287					0.053611973712804684
LHVIARDF	8	Unmodified	_LHVIARDF_					0	0	0		nc|ENSG00000169379|Q3SXY8-2|ARL13B;nc|ENSG00000169379|Q3SXY8-3|ARL13B;ENSG00000169379|ENST00000394222|ARL13B	nc|ENSG00000169379|Q3SXY8-2|ARL13B	nc|ENSG00000169379|Q3SXY8-2|ARL13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.3081359863281	2	485.777077	969.5396	-0.15057	-7.3143E-05	-3.6516	-0.0017739	-3.8022	-0.001847	485.7752181598232	12.368	0.14923	12.3	12.196	12.345	-0.06806					8	4	2	0	0	0	0.344	1	80	80		2.5775	0.27475	1	46651			23141	6353	13067	13068	29288	29288					0.053611973712804684
LHVIARDF	8	Unmodified	_LHVIARDF_					0	0	0		nc|ENSG00000169379|Q3SXY8-2|ARL13B;nc|ENSG00000169379|Q3SXY8-3|ARL13B;ENSG00000169379|ENST00000394222|ARL13B	nc|ENSG00000169379|Q3SXY8-2|ARL13B	nc|ENSG00000169379|Q3SXY8-2|ARL13B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	485.777077	969.5396	-0.11313	-5.4954E-05	-3.7503	-0.0018218	-3.8634	-0.0018768	485.7751363643008	12.347	0.15265	12.347	12.245	12.397	0	0.046049	9.9208E-06	NaN	2.5775	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46048			23142	6353	13067	13068							0.053611973712804684
LHVLAQVI	8	Unmodified	_LHVLAQVI_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;RPAP1|p.A515Qfs*40|1|0.19|ENSG00000103932|chr15:41527491-41527491|C/-|frameshift_variant	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	446.2502136230469	2	446.78437	891.554188	0.18344	8.1956E-05	0.056772	2.5365E-05	0.24021	0.00010732	446.78427335055875	57.162	0.87016	57.241	56.935	57.805	0.078671					60	31	4	0	0	0	0.34046	1	13923	13923		14.582	0	1	539460			23143	1855	13068	13069	29289	29289					0.10407269519430429
LHVLAQVI	8	Unmodified	_LHVLAQVI_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;RPAP1|p.A515Qfs*40|1|0.19|ENSG00000103932|chr15:41527491-41527491|C/-|frameshift_variant	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	446.78437	891.554188	0.38114	0.00017029	-0.011136	-4.9752E-06	0.37001	0.00016531	446.7841620828669	57.26	0.73233	57.26	56.986	57.718	0	0.02982	-2.3809E-05	NaN	14.582	64	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	520050			23144	1855	13068	13069							0.10407269519430429
LHVLAQVI	8	Unmodified	_LHVLAQVI_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;RPAP1|p.A515Qfs*40|1|0.19|ENSG00000103932|chr15:41527491-41527491|C/-|frameshift_variant	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	446.78437	891.554188	0.16011	7.1534E-05	-0.021771	-9.7267E-06	0.13834	6.1807E-05	446.7842434715313	57.209	0.63112	57.191	56.974	57.605	-0.018448	-0.039862	-3.3312E-05	NaN	14.582	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573330			23145	1855	13068	13069							0.10407269519430429
LHVQRYQQLK	10	Unmodified	_LHVQRYQQLK_					0	0	0			REV__ENSG00000120725|ENST00000394817|SIL1	REV__ENSG00000120725|ENST00000394817|SIL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.93310546875	3	438.254328	1311.74115	-0.25064	-0.00010985	-2.3066	-0.0010109	-2.5572	-0.0011207	438.25329244678375	27.601	0.37455	27.589	27.407	27.781	-0.011562					21	12	3	0	0	0	0.31969	1	4740	4740		5.7834	0	1	125880	+		23146	15094	13069	13070	29290	29290					0.09775261336994845
LHVRFVVA	8	Unmodified	_LHVRFVVA_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-3|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-3|FAM135B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2472229003906	2	470.789987	939.565421	-0.19288	-9.0804E-05	1.6364	0.00077041	1.4435	0.00067961	470.7903263562191	34.336	0.48458	34.403	34.209	34.694	0.066704					37	16	3	0	0	0	0.3439	1	6803	6803		2.8892	2.0956	1	163130	+		23147	16404	13070	13071	29291	29291					0.09322091613569228
LHWIFQIS	8	Unmodified	_LHWIFQIS_					0	0	0		nc|ENSG00000286105|A0A494BZU4|TMEM217B;ENST00000356757.6_1_6:37180235-37180745:-|nuORF	nc|ENSG00000286105|A0A494BZU4|TMEM217B	nc|ENSG00000286105|A0A494BZU4|TMEM217B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.7384643554688	2	522.287277	1042.56	0.17152	8.9581E-05	0.17819	9.3065E-05	0.3497	0.00018265	522.2874079621248	45.916	0.53215	45.976	45.677	46.209	0.059834					37	18	3	0	0	0	0.34185	1	10216	10216		10.183	0.10947	1	690400			23148	9624	13071	13072	29292	29292					0.04042368031082333
LHWLSHTVA	9	Unmodified	_LHWLSHTVA_					0	0	0			REV__nc|ENSG00000180259|Q86SH4|PRNT	REV__nc|ENSG00000180259|Q86SH4|PRNT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2756958007812	2	532.287808	1062.56106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.976	1	93.976	93.476	94.476	0								0	0	0	0.25499	1	25048	25048		4.756	0.42677	1		+		23149	23113	13072	13073	29293	29293					0.03228582399970037
LHWSAWFLL	9	Unmodified	_LHWSAWFLL_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8344116210938	2	586.816202	1171.61785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.391	1	84.391	83.891	84.891	0								0	0	0	0.25352	1	22120	22120		5.2307	1.2863	1				23150	6225;11932	13073	13074	29294	29294					0.03890629956504199
LHWTLIRSFI	10	Unmodified	_LHWTLIRSFI_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.548583984375	3	429.252036	1284.73428	-0.14322	-6.1479E-05	-0.81933	-0.0003517	-0.96255	-0.00041318	429.2524320645204	16.736	0.38201	16.736	16.632	17.014	0					33	12	3	0	0	0	0.31745	1	1418	1418		5.0475	2.2042	1	241660	+		23151	15026	13074	13075	29295	29295					0.1032994845641042
LHYLVFIKPS	10	Unmodified	_LHYLVFIKPS_					0	0	0		ENST00000486166.1_1_X:16870817-16871009:-|nuORF	ENST00000486166.1_1_X:16870817-16871009:-|nuORF	ENST00000486166.1_1_X:16870817-16871009:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.3426513671875	2	608.858067	1215.70158	0.55991	0.00034091	-2.9278	-0.0017826	-2.3678	-0.0014417	609.3569229660495	79.114	0.57233	79.175	78.846	79.418	0.061409					35	26	2	0	0	0	0.31926	1	20395	20395		5.7319	2.1354	1	201760			23152	11102	13075	13076	29296	29296					0.1023574133355396
LHYVLERR	8	Unmodified	_LHYVLERR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.826171875	2	543.314358	1084.61416	0.11623	6.3147E-05	-3.0482	-0.0016561	-2.932	-0.001593	543.3121946517082	12.136	0.20837	12.136	12.011	12.219	0					13	10	2	0	0	0	0.46461	1	5	5		0.79363	0	1	21440			23153	5186	13076	13077	29297	29297					0.07523960182652445
LIAEMLVL	8	Unmodified	_LIAEMLVL_					0	0	0			REV__ENST00000444886.1_1_9:128358610-128358904:+|nuORF	REV__ENST00000444886.1_1_9:128358610-128358904:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.2749938964844	2	451.274989	900.535426	-0.057239	-2.5831E-05	-0.032474	-1.4655E-05	-0.089714	-4.0486E-05	451.2748439314771	73.676	0.82346	73.676	73.335	74.158	0					74	28	4	0	0	0	0.32313	1	18919	18919		28.173	1.832	1	1483700	+		23154	21070	13077	13078	29298	29298					0.08117971833337378
LIAEMLVL	8	Unmodified	_LIAEMLVL_					0	0	0			REV__ENST00000444886.1_1_9:128358610-128358904:+|nuORF	REV__ENST00000444886.1_1_9:128358610-128358904:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7643737792969	2	451.274989	900.535426	-0.057239	-2.5831E-05	-0.032474	-1.4655E-05	-0.089714	-4.0486E-05	451.2748439314771	73.676	0.82346	73.676	73.335	74.158	0					74	28	4	0	0	0	0.30749	1	18792	18792		14.582	1.0738	1	1483700	+		23155	21070	13077	13078	29299	29299					0.08117971833337378
LIAEMLVL	8	Unmodified	_LIAEMLVL_					0	0	0			REV__ENST00000444886.1_1_9:128358610-128358904:+|nuORF	REV__ENST00000444886.1_1_9:128358610-128358904:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2748107910156	2	451.274989	900.535426	0.07212	3.2546E-05	-0.02191	-9.8875E-06	0.05021	2.2658E-05	451.2748495085816	73.661	0.81567	73.713	73.36	74.176	0.052368					76	28	4	0	0	0	0.38703	1	18887	18887		20.871	0	1	1407700	+		23156	21070	13077	13078	29300	29300					0.08117971833337378
LIAEMLVL	8	Unmodified	_LIAEMLVL_					0	0	0			REV__ENST00000444886.1_1_9:128358610-128358904:+|nuORF	REV__ENST00000444886.1_1_9:128358610-128358904:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2747802734375	2	451.274989	900.535426	0.07212	3.2546E-05	-0.02191	-9.8875E-06	0.05021	2.2658E-05	451.2748495085816	73.661	0.81567	73.713	73.36	74.176	0.052368					76	28	4	0	0	0	0.32778	1	18782	18782		20.871	1.4322	1	1407700	+		23157	21070	13077	13078	29301	29301					0.08117971833337378
LIAEMLVL	8	Unmodified	_LIAEMLVL_					0	0	0			REV__ENST00000444886.1_1_9:128358610-128358904:+|nuORF	REV__ENST00000444886.1_1_9:128358610-128358904:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2748718261719	2	451.274989	900.535426	0.12304	5.5526E-05	-0.13771	-6.2144E-05	-0.014667	-6.6187E-06	451.2748352609945	73.729	0.79668	73.698	73.314	74.111	-0.030655					80	28	4	0	0	0	0.38703	1	18891	18891		20.871	1.4322	1	1366800	+		23158	21070	13077	13078	29302	29302					0.08117971833337378
LIAEMLVL	8	Unmodified	_LIAEMLVL_					0	0	0			REV__ENST00000444886.1_1_9:128358610-128358904:+|nuORF	REV__ENST00000444886.1_1_9:128358610-128358904:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2748107910156	2	451.274989	900.535426	0.12304	5.5526E-05	-0.13771	-6.2144E-05	-0.014667	-6.6187E-06	451.2748352609945	73.729	0.79668	73.698	73.314	74.111	-0.030655					80	28	4	0	0	0	0.32778	1	18795	18795		20.871	7.3633	1	1366800	+		23159	21070	13077	13078	29303	29303					0.08117971833337378
LIAFMVKAV	9	Unmodified	_LIAFMVKAV_					0	0	0		ENST00000296885.7_1_6:88117749-88144792:+|nuORF;ENSG00000272514|ENST00000369562|CFAP206	ENST00000296885.7_1_6:88117749-88144792:+|nuORF	ENST00000296885.7_1_6:88117749-88144792:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.30413818359375	2	496.304081	990.59361	0.49758	0.00024695	-0.065097	-3.2308E-05	0.43249	0.00021464	496.30394012061043	72.202	1.7999	72.258	71.43	73.23	0.056572					180	65	3	0	0	0	0.26879	1	18318	18318		13.508	2.3934	1	1122500			23160	8702	13078	13079	29304	29304					0.09793653478629949
LIAFVINSL	9	Unmodified	_LIAFVINSL_					0	0	0		ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	ENSG00000146409|ENST00000275227|SLC18B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.30438232421875	2	495.305136	988.595718	0.48613	0.00024078	-1.0964	-0.00054304	-0.61025	-0.00030226	495.3045611014557	58.247	1.0117	58.247	57.88	58.891	0					66	34	3	0	0	0	0.047483	1	14208	14208		53.833	17.327	1	1003800			23161	4709	13079	13080	29305	29305					0.10096405488070559
LIAGFQRVQA	10	Unmodified	_LIAGFQRVQA_					0	0	0		nc|ENSG00000138709|Q659C4-4|LARP1B;nc|ENSG00000138709|Q659C4-3|LARP1B;nc|ENSG00000138709|Q659C4-9|LARP1B;nc|ENSG00000138709|Q659C4-2|LARP1B;ENSG00000138709|ENST00000326639|LARP1B	nc|ENSG00000138709|Q659C4-4|LARP1B	nc|ENSG00000138709|Q659C4-4|LARP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.2837524414062	2	551.822015	1101.62948	0.20226	0.00011161	0.23504	0.0001297	0.43729	0.00024131	551.821487731232	33.586	0.43659	33.653	33.415	33.852	0.0667					25	15	2	0	0	0	0.3144	1	6554	6554		13.042	1.4022	1	123080			23162	4182	13080	13081	29306	29306					0.08272826979850834
LIAGKIIPAI	10	Unmodified	_LIAGKIIPAI_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.3421936035156	2	504.844428	1007.6743	0.26756	0.00013508	-2.6321	-0.0013288	-2.3645	-0.0011937	504.84440181170794	74.318	1.3715	74.371	73.977	75.349	0.052361					146	48	5	0	0	0	0.36002	1	18961	18961		10.824	2.2306	1	6708500			23163	3533	13081	13082	29307	29307					0.17077257793164335
LIAPCNANCNC	11	Unmodified	_LIAPCNANCNC_					0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8468017578125	2	568.238286	1134.46202	0.48498	0.00027558	-1.1569	-0.00065741	-0.67195	-0.00038183	568.2375869817588	68.898	0.34789	68.97	68.781	69.129	0.071938					23	12	3	0	0	0	0.32843	1	17323	17323		10.074	8.4213	1	124950			23164	6762	13082	13083	29308	29308					-0.09983267943084684
LIAQPLRLT	9	Unmodified	_LIAQPLRLT_					0	0	0			REV__nc|ENSG00000100599|Q8TB24-4|RIN3	REV__nc|ENSG00000100599|Q8TB24-4|RIN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.277099609375	2	512.829309	1023.64407	0.7067	0.00036242	-0.088664	-4.5469E-05	0.61804	0.00031695	512.8292994653842	54.822	0.44833	54.822	54.526	54.974	0					21	16	2	0	0	0	0.24688	1	13060	13060		10.074	0	1	271120	+		23165	14211	13083	13084	29309	29309					0.13318899127966688
LIARLCKHRVA	11	Unmodified	_LIARLCKHRVA_					0	0	0			REV__TRIP12|p.I1368Yfs*4|1|0.34|ENSG00000153827|chr2:229791954-229791955|-/A|frameshift_variant	REV__TRIP12|p.I1368Yfs*4|1|0.34|ENSG00000153827|chr2:229791954-229791955|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.39306640625	2	640.392616	1278.77068	0.63072	0.00040391	0.85826	0.00054962	1.489	0.00095354	640.3929961170087	47.864	1.1721	47.864	47.493	48.665	0					115	41	4	0	0	0	0.47633	1	10950	10950		1.1933	0	1	6465000	+		23166	16636	13084	13085	29310	29310					0.14244502081464816
LIARLCKHRVA	11	Unmodified	_LIARLCKHRVA_					0	0	0			REV__TRIP12|p.I1368Yfs*4|1|0.34|ENSG00000153827|chr2:229791954-229791955|-/A|frameshift_variant	REV__TRIP12|p.I1368Yfs*4|1|0.34|ENSG00000153827|chr2:229791954-229791955|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.3931884765625	2	640.392616	1278.77068	0.86829	0.00055605	0.4588	0.00029381	1.3271	0.00084986	640.3927461441656	47.803	1.2364	47.851	47.482	48.718	0.047523					129	45	4	0	0	0	0.47633	1	10991	10991		1.1933	1.1933	1	5873700	+		23167	16636	13084	13085	29311	29311					0.14244502081464816
LIARLCKHRVA	11	Unmodified	_LIARLCKHRVA_					0	0	0			REV__TRIP12|p.I1368Yfs*4|1|0.34|ENSG00000153827|chr2:229791954-229791955|-/A|frameshift_variant	REV__TRIP12|p.I1368Yfs*4|1|0.34|ENSG00000153827|chr2:229791954-229791955|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.3927001953125	2	640.392616	1278.77068	0.73966	0.00047367	0.45684	0.00029256	1.1965	0.00076623	640.392743798799	47.806	1.1129	47.849	47.53	48.643	0.043324					107	41	3	0	0	0	0.46554	2	10978	10874;10978		1.1933	1.1933	1	4434000	+		23168	16636	13084	13085	29312;29313	29313					0.14244502081464816
LIASPHLAFP	10	Unmodified	_LIASPHLAFP_					0	0	0		ENSG00000165821|ENST00000537235|SALL2;nc|ENSG00000165821|Q9Y467|SALL2	ENSG00000165821|ENST00000537235|SALL2	ENSG00000165821|ENST00000537235|SALL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3084716796875	2	533.30821	1064.60187	-0.028854	-1.5388E-05	0.88604	0.00047253	0.85719	0.00045715	533.3083996821895	65.274	2.3861	65.363	65.006	67.392	0.088882					184	86	3	0	0	0	0.2593	1	16369	16369		25.399	0.40835	1	8035500			23169	6004	13085	13086	29314	29314					0.07214923719607214
LIASPHLAFP	10	Unmodified	_LIASPHLAFP_					0	0	0		ENSG00000165821|ENST00000537235|SALL2;nc|ENSG00000165821|Q9Y467|SALL2	ENSG00000165821|ENST00000537235|SALL2	ENSG00000165821|ENST00000537235|SALL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.30859375	2	533.30821	1064.60187	0.40117	0.00021395	0.29077	0.00015507	0.69194	0.00036902	533.3081723282213	65.4	1.4096	65.389	64.972	66.382	-0.011337					137	51	4	0	0	0	0.18807	1	16412	16412		34.102	6.4736	1	7499500			23170	6004	13085	13086	29315	29315					0.07214923719607214
LIAWFKSIE	9	Unmodified	_LIAWFKSIE_					0	0	0			REV__ENST00000373644.4_1_10:70406043-70406097:+|nuORF	REV__ENST00000373644.4_1_10:70406043-70406097:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.345458984375	2	553.815867	1105.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.213	1	12.145	11.645	12.645	-0.06806								0	0	0	0.26704	1	59	59		0.6015	0	1		+		23171	20446	13086	13087	29316	29316					0.06859790516796238
LICLLPLSF	9	Unmodified	_LICLLPLSF_					0	0	0			REV__ENST00000366769.7_1_1:227505320-227505512:-|nuORF	REV__ENST00000366769.7_1_1:227505320-227505512:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.80389404296875	2	509.803914	1017.59328	0.34613	0.00017646	0.004175	2.1284E-06	0.35031	0.00017859	509.8038821588643	88.709	1.0586	88.798	88.246	89.304	0.089195					97	45	3	0	0	0	0.33018	1	23407	23407		4.3292	0	1	550170	+		23172	20299	13087	13088	29317	29317					0.08518233758775295
LICLRIPGS	9	Unmodified	_LICLRIPGS_					0	0	0		ENST00000254928.9_1_17:27183311-27184957:+|nuORF	ENST00000254928.9_1_17:27183311-27184957:+|nuORF	ENST00000254928.9_1_17:27183311-27184957:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7998352050781	2	486.288963	970.563372	0.045199	2.198E-05	-3.0852	-0.0015003	-3.04	-0.0014783	486.2872699495214	60.368	0.29373	60.368	60.175	60.469	0					14	10	2	0	0	0	0.1524	1	14727	14727		25.399	6.0374	1	135670			23173	8920	13088	13089	29318	29318					0.07691294813457716
LICLRIPGS	9	Unmodified	_LICLRIPGS_					0	0	0		ENST00000254928.9_1_17:27183311-27184957:+|nuORF	ENST00000254928.9_1_17:27183311-27184957:+|nuORF	ENST00000254928.9_1_17:27183311-27184957:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	486.288963	970.563372	-0.1658	-8.0628E-05	-2.3007	-0.0011188	-2.4665	-0.0011994	486.28707619792993	60.31	0.23591	60.405	60.211	60.447	0.095093	0.018133	0.00061899	NaN	25.399	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215090			23174	8920	13088	13089							0.07691294813457716
LICLTLPVF	9	Unmodified	_LICLTLPVF_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6;ENST00000505253.1_1_5:10413496-10422048:+|nuORF	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8040771484375	2	509.803914	1017.59328	0.22616	0.0001153	-0.035551	-1.8124E-05	0.19061	9.7175E-05	509.80383599795044	76.259	3.0687	76.313	75.455	78.523	0.053421					204	110	4	0	0	0	0.32733	1	20226	20226		4.756	4.756	1	8134600			23175	4655	13089	13090	29319	29319					0.08518233758786664
LICLTLPVF	9	Unmodified	_LICLTLPVF_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6;ENST00000505253.1_1_5:10413496-10422048:+|nuORF	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.80364990234375	2	509.803914	1017.59328	0.36866	0.00018795	-0.12705	-6.4768E-05	0.24162	0.00012318	509.803738168651	74.265	2.9138	74.235	72.454	75.367	-0.030655					196	105	3	0	0	0	0.193	1	19294	19294		24.674	5.2349	1	2074000			23176	4655	13089	13090	29320	29320					0.08518233758786664
LICSVAQVF	9	Unmodified	_LICSVAQVF_					0	0	0		ENSG00000119686|ENST00000238667|FLVCR2	ENSG00000119686|ENST00000238667|FLVCR2	ENSG00000119686|ENST00000238667|FLVCR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2682800292969	2	490.267696	978.520839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.736	1	74.736	74.236	75.236	0								0	0	0	0.21726	1	19166	19166		16.942	5.302	1				23177	2898	13090	13091	29321	29321					0.030718996852101554
LICSVAQVF	9	Unmodified	_LICSVAQVF_					0	0	0		ENSG00000119686|ENST00000238667|FLVCR2	ENSG00000119686|ENST00000238667|FLVCR2	ENSG00000119686|ENST00000238667|FLVCR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2667236328125	2	490.267696	978.520839	0.38433	0.00018842	-0.033813	-1.6577E-05	0.35051	0.00017185	490.2673675429953	74.23	0.44244	74.199	74.059	74.501	-0.030655					23	15	2	0	0	0	0.20344	1	19075	19075		23.148	5.0134	1	497080			23178	2898	13090	13091	29322	29322					0.030718996852101554
LIDKKTIIGLL	11	Unmodified	_LIDKKTIIGLL_					0	0	0			REV__nc|ENSG00000109572|P51790-4|CLCN3	REV__nc|ENSG00000109572|P51790-4|CLCN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.60797119140625	3	409.607596	1225.80096	0.011884	4.8677E-06	0.84608	0.00034656	0.85796	0.00035143	409.60840964174287	52.584	3.3326	52.583	52.194	55.526	-0.00080872					397	122	6	0	0	0	0.258	2	12275	12275;12369		25.997	5.1263	1	92153000	+		23179	14644	13091	13092	29323;29324	29323					0.19709139227666128
LIDLIQEGKPL	11	Unmodified	_LIDLIQEGKPL_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3731689453125	2	619.871371	1237.72819	0.32312	0.00020029	-2.9168	-0.001808	-2.5937	-0.0016077	619.8684087462731	93.756	0.61766	93.755	93.414	94.031	-0.00051117					65	45	2	0	0	0	0.46475	1	24947	24947		2.7352	0.23671	1	186880	+		23180	16784	13092	13093	29325	29325					0.11883385434225602
LIDPRLIIE	9	Unmodified	_LIDPRLIIE_					0	0	0		ENSG00000121058|ENST00000240316|COIL	ENSG00000121058|ENST00000240316|COIL	ENSG00000121058|ENST00000240316|COIL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.3055419921875	2	541.334424	1080.6543	0.38504	0.00020843	-2.311	-0.001251	-1.926	-0.0010426	541.3328911248569	73.6	0.24723	73.652	73.445	73.692	0.052361					10	8	2	0	0	0	0.24913	1	18774	18774		7.9102	0.62092	1	64380			23181	2984	13093	13094	29326	29326					0.11719462062569619
LIDQSFLAF	9	Unmodified	_LIDQSFLAF_					0	0	0		nc|ENSG00000162065|Q9ULP9-2|TBC1D24;ENSG00000162065|ENST00000646147|TBC1D24	nc|ENSG00000162065|Q9ULP9-2|TBC1D24	nc|ENSG00000162065|Q9ULP9-2|TBC1D24	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3027954101562	2	527.2844	1052.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.107	1	83.18	82.68	83.68	0.073097								0	0	0	0.21357	1	21719	21719		18.135	1.1927	1				23182	5545	13094	13095	29327	29327					0.030072247287534992
LIEDMEYP	8	Unmodified	_LIEDMEYP_					0	0	0			REV__ENST00000438666.6_1_13:36878379-36878502:-|nuORF	REV__ENST00000438666.6_1_13:36878379-36878502:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.78314208984375	2	505.230976	1008.4474	0.35638	0.00018006	0.5966	0.00030142	0.95299	0.00048148	505.2313356988184	71.229	0.36372	71.229	71.128	71.491	0					17	12	2	0	0	0	0.34185	1	18113	18113		10.183	10.183	1	210370	+		23183	21030	13095	13096	29328	29328					-0.056486935479370004
LIEDMEYP	8	Unmodified	_LIEDMEYP_					0	0	0			REV__ENST00000438666.6_1_13:36878379-36878502:-|nuORF	REV__ENST00000438666.6_1_13:36878379-36878502:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	505.230976	1008.4474	0.29692	0.00015001	0.44535	0.00022501	0.74227	0.00037502	505.2311945686453	71.256	0.25243	71.317	71.21	71.463	0.060783	0.017335	-0.00020132	NaN	10.183	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195640	+		23184	21030	13095	13096							-0.056486935479370004
LIEDMEYP	8	Unmodified	_LIEDMEYP_					0	0	0			REV__ENST00000438666.6_1_13:36878379-36878502:-|nuORF	REV__ENST00000438666.6_1_13:36878379-36878502:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	505.230976	1008.4474	0.41591	0.00021013	0.81358	0.00041105	1.2295	0.00062118	505.2314270127682	71.38	0.32368	71.353	71.128	71.452	-0.027275	0.053141	0.00017077	NaN	10.183	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226040	+		23185	21030	13095	13096							-0.056486935479370004
LIEFVRSNL	9	Unmodified	_LIEFVRSNL_					0	0	0			REV__TLR5|p.T310I|1|0.31|ENSG00000187554|chr1:223112103-223112103|G/A|missense_variant	REV__TLR5|p.T310I|1|0.31|ENSG00000187554|chr1:223112103-223112103|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.83056640625	2	545.816399	1089.61824	0.53581	0.00029245	0.44917	0.00024516	0.98498	0.00053762	545.8165751272097	42.381	0.56927	42.466	42.211	42.78	0.085197					33	20	2	0	0	0	0.18803	1	9184	9184		25.399	2.7412	1	396700	+		23186	23338	13096	13097	29329	29329					0.07702004885709357
LIEHLLSELSK	11	Unmodified	_LIEHLLSELSK_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.3743896484375	2	641.374278	1280.734	0.6368	0.00040843	-0.31042	-0.00019909	0.32638	0.00020933	641.3740660864919	65.833	0.82858	65.833	65.488	66.317	0					76	29	3	0	0	0	0.42346	1	16446	16446		8.1555	8.1555	1	1907700			23187	2367	13097	13098	29330	29330					0.1048648394587417
LIEHLLSELSK	11	Unmodified	_LIEHLLSELSK_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.3744506835938	2	641.374278	1280.734	0.65473	0.00041993	-0.19828	-0.00012717	0.45645	0.00029276	641.3740883765579	65.756	0.89973	65.845	65.46	66.359	0.088882					93	32	4	0	0	0	0.42346	2	16371	16371;16417		8.1555	8.1555	1	1883100			23188	2367	13097	13098	29331;29332	29331					0.1048648394587417
LIEKVEQR	8	Unmodified	_LIEKVEQR_					0	0	0			REV__nc|ENSG00000042286|Q9BRQ8-2|AIFM2	REV__nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.27978515625	2	507.800749	1013.58694	0.26186	0.00013297	-1.2983	-0.00065929	-1.0365	-0.00052632	507.79970723743975	26.966	0.16614	26.966	26.925	27.091	0					7	5	2	0	0	0	0.34414	1	4529	4529		2.0598	0	1	24966	+		23189	13531	13098	13099	29333	29333					0.08069431851617992
LIEKWRDTERH	11	Unmodified	_LIEKWRDTERH_					0	0	0		nc|ENSG00000123094|Q8NHQ8-2|RASSF8;ENSG00000123094|ENST00000689635|RASSF8	nc|ENSG00000123094|Q8NHQ8-2|RASSF8	nc|ENSG00000123094|Q8NHQ8-2|RASSF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7844543457031	3	494.931913	1481.77391	0.50989	0.00025236	3.0693	0.0015191	3.5792	0.0017714	495.26879102881145	58.082	0.13412	58.065	57.953	58.087	-0.0172					6	4	2	0	0	0	0.33182	1	14043	14043		5.4027	2.3304	1	79454			23190	3085	13099	13100	29334	29334					0.05229423669152311
LIEPLSVGI	9	Unmodified	_LIEPLSVGI_					0	0	0		ENST00000559230.5_1_15:45353218-45365725:+|nuORF;ENSG00000140263|ENST00000267814|SORD	ENST00000559230.5_1_15:45353218-45365725:+|nuORF	ENST00000559230.5_1_15:45353218-45365725:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.27435302734375	2	470.789318	939.564084	-0.13234	-6.2303E-05	-3.2013	-0.0015071	-3.3336	-0.0015694	470.7880135770227	14.011	0.20465	13.945	13.802	14.007	-0.066068					8	6	2	0	0	0	0.25988	1	577	577		3.9444	0	1	16486			23191	4289	13100	13101	29335	29335					0.09188412734147278
LIEPVARQRR	10	Unmodified	_LIEPVARQRR_					0	0	0			REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	REV__nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2660827636719	3	413.254439	1236.74149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.8	1	12.733	12.233	13.233	-0.067496								0	0	0	0.38197	1	234	234		0.69767	0	1		+		23192	15389	13101	13102	29336	29336					0.13258681056822752
LIEWCWRTI	9	Unmodified	_LIEWCWRTI_					0	0	0			REV__SMCR8|p.K122Efs*32|1|0.08|ENSG00000176994|chr17:18316151-18316152|-/GGAAATAA|frameshift_variant	REV__SMCR8|p.K122Efs*32|1|0.08|ENSG00000176994|chr17:18316151-18316152|-/GGAAATAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5561218261719	3	407.214593	1218.62195	0.075224	3.0632E-05	-0.8459	-0.00034446	-0.77068	-0.00031383	407.2142219827455	37.936	0.32777	37.936	37.707	38.034	0					13	11	2	0	0	0	0.22143	1	7868	7868		14.405	8.171	1	104620	+		23193	23308	13102	13103	29337	29337					0.02138351387907278
LIFFESIIF	9	Unmodified	_LIFFESIIF_					0	0	0			REV__ENSG00000181752|ENST00000313447|OR8K5	REV__ENSG00000181752|ENST00000313447|OR8K5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8206787109375	2	564.820618	1127.62668	0.2471	0.00013957	1.1876	0.00067076	1.4347	0.00081033	564.8211007283917	80.441	2.0633	80.441	79.495	81.558	0					209	86	3	0	0	0	0.25811	1	21226	21226		5.2307	0.47466	1	2302400	+		23194	18163	13103	13104	29338	29338					0.0679755880232733
LIFFILNF	8	Unmodified	_LIFFILNF_					0	0	0			REV__ENST00000525898.5_1_11:44609042-44626792:+|nuORF	REV__ENST00000525898.5_1_11:44609042-44626792:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8052978515625	2	513.804771	1025.59499	0.3087	0.00015861	1.0229	0.00052556	1.3316	0.00068417	513.8049969801025	86.947	0.79906	87.034	86.705	87.504	0.087097					83	34	4	0	0	0	0.45851	1	22983	22983		2.8892	0	1	546460	+		23195	13954	13104	13105	29339	29339					0.0832161083903884
LIFFRKAWSV	10	Unmodified	_LIFFRKAWSV_					0	0	0			REV__ENST00000507668.6_1_5:79436329-79436551:-|nuORF	REV__ENST00000507668.6_1_5:79436329-79436551:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8716430664062	2	633.871508	1265.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.8	1	117.82	117.32	118.32	0.023476								0	0	0	0.38202	1	30523	30523		0.40072	0	1		+		23196	21762	13105	13106	29340	29340					0.10622849944752488
LIFGQGNKIY	10	Unmodified	_LIFGQGNKIY_					0	0	0			REV__ENSG00000181467|ENST00000323534|RAP2B	REV__ENSG00000181467|ENST00000323534|RAP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.806884765625	2	576.824224	1151.63389	0.18488	0.00010664	0.28902	0.00016671	0.4739	0.00027335	576.8239970001495	60.263	0.88931	60.251	59.997	60.886	-0.011486					118	32	6	0	0	0	0.33268	1	14838	14838		15.847	1.9411	1	4252400	+		23197	18150	13106	13107	29341	29341					0.06414291402757044
LIFGTTFEWL	10	Unmodified	_LIFGTTFEWL_					0	0	0			REV__ENSG00000198133|ENST00000554480|TMEM229B	REV__ENSG00000198133|ENST00000554480|TMEM229B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5522766113281	3	409.55338	1225.63831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.09	1	22.041	21.541	22.541	-0.049377								0	0	0	0.37598	1	3038	3038		3.8763	0	1		+		23198	18802	13107	13108	29342	29342					0.034517558256538905
LIFHKDILF	9	Unmodified	_LIFHKDILF_					0	0	0		ENST00000484845.1_1_18:3774645-3845282:-|nuORF;nc|ENSG00000170579|O14490-3|DLGAP1;nc|ENSG00000170579|O14490-2|DLGAP1;nc|ENSG00000170579|O14490-6|DLGAP1	ENST00000484845.1_1_18:3774645-3845282:-|nuORF	ENST00000484845.1_1_18:3774645-3845282:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8407592773438	2	573.33951	1144.66447	0.37439	0.00021465	-0.9615	-0.00055127	-0.58711	-0.00033661	573.3387900269732	91.113	0.36364	91.204	91.059	91.422	0.090675					40	25	2	0	0	0	0.34681	1	24161	24161		1.8442	0	1	428920			23199	11081	13108	13109	29343	29343					0.09792069787795299
LIFINHKKL	9	Unmodified	_LIFINHKKL_					0	0	0		nc|ENSG00000161298|Q96SR6-3|ZNF382;nc|ENSG00000161298|Q96SR6-2|ZNF382;ENSG00000161298|ENST00000292928|ZNF382	nc|ENSG00000161298|Q96SR6-3|ZNF382	nc|ENSG00000161298|Q96SR6-3|ZNF382	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.3147583007812	2	563.360776	1124.707	0.082889	4.6697E-05	0.68787	0.00038752	0.77076	0.00043421	563.3609361206067	60.247	0.18154	60.235	60.168	60.35	-0.011486					9	6	2	0	0	0	0.25066	1	14735	14735		7.2892	2.5332	1	136160			23200	5513	13109	13110	29344	29344					0.14963464916036173
LIFMIEFKR	9	Unmodified	_LIFMIEFKR_					0	0	0		ENST00000553829.1_1_15:93426376-93426900:+|nuORF	ENST00000553829.1_1_15:93426376-93426900:+|nuORF	ENST00000553829.1_1_15:93426376-93426900:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.3490600585938	2	598.846645	1195.67874	0.31057	0.00018598	0.31674	0.00018968	0.62731	0.00037566	598.8465891951665	18.474	0.51744	18.356	18.038	18.556	-0.11739					27	17	2	0	0	0	0.34681	1	1921	1921		1.8442	0.19162	1	44277			23201	11824	13110	13111	29345	29345					0.088723989444361
LIFMIEFKR	9	Unmodified	_LIFMIEFKR_					0	0	0		ENST00000553829.1_1_15:93426376-93426900:+|nuORF	ENST00000553829.1_1_15:93426376-93426900:+|nuORF	ENST00000553829.1_1_15:93426376-93426900:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	598.846645	1195.67874	0.053469	3.202E-05	0.52291	0.00031315	0.57638	0.00034517	598.8464935244381	18.433	0.42894	18.375	18.199	18.628	-0.058174	0.015798	0.00020193	NaN	1.8442	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41055			23202	11824	13110	13111							0.088723989444361
LIFNEDEFK	9	Unmodified	_LIFNEDEFK_					0	0	0			REV__nc|ENSG00000196262|P62937-2|PPIA	REV__nc|ENSG00000196262|P62937-2|PPIA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2716064453125	2	577.790047	1153.56554	0.12241	7.0729E-05	-0.25762	-0.00014885	-0.13521	-7.8121E-05	577.7898077190079	61.103	0.44418	61.2	61.093	61.538	0.096989					23	16	2	0	0	0	0.20881	1	14960	14960		27.629	3.6082	1	558420	+		23203	18636	13111	13112	29346	29346					-0.0050999796778796735
LIFNEDEFK	9	Unmodified	_LIFNEDEFK_					0	0	0			REV__nc|ENSG00000196262|P62937-2|PPIA	REV__nc|ENSG00000196262|P62937-2|PPIA	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	577.790047	1153.56554	0.1164	6.7256E-05	-0.08471	-4.8944E-05	0.031692	1.8311E-05	577.789910320256	61.173	0.46014	61.164	61.016	61.477	-0.0094566	-0.036126	8.5763E-05	NaN	27.629	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	628880	+		23204	18636	13111	13112							-0.0050999796778796735
LIFNFLLW	8	Unmodified	_LIFNFLLW_					0	0	0		ENST00000393543.7_1_12:68721008-68721122:-|nuORF	ENST00000393543.7_1_12:68721008-68721122:-|nuORF	ENST00000393543.7_1_12:68721008-68721122:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7822265625	2	533.310221	1064.60589	0.74365	0.0003966	-0.60082	-0.00032043	0.14283	7.6172E-05	533.3096376025687	54.201	0.4275	54.201	53.946	54.374	0					26	15	2	0	0	0	0.33618	1	12898	12898		17.087	2.5049	1	363720			23205	10051	13112	13113	29347	29347					0.07617013213325663
LIFRYKRF	8	Unmodified	_LIFRYKRF_					0	0	0			REV__ENSG00000167470|ENST00000682408|MIDN	REV__ENSG00000167470|ENST00000682408|MIDN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.326171875	2	571.845294	1141.67603	0.26319	0.0001505	-1.4602	-0.00083503	-1.197	-0.00068453	571.8444832908677	70.217	0.44585	70.195	69.886	70.332	-0.022087					21	15	2	0	0	0	0.34147	1	17811	17811		11.114	1.0405	1	57087	+		23206	17384	13113	13114	29348	29348					0.11086311601798116
LIFTESKRK	9	Unmodified	_LIFTESKRK_					0	0	0		ENST00000446957.6_2_13:33110995-33111067:-|nuORF	ENST00000446957.6_2_13:33110995-33111067:-|nuORF	ENST00000446957.6_2_13:33110995-33111067:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.3370361328125	2	561.337498	1120.66044	0.19677	0.00011045	-0.41312	-0.0002319	-0.21635	-0.00012145	561.3370530933514	19.852	0.35915	19.852	19.627	19.986	0					23	12	2	0	0	0	0.2869	1	2343	2343		10.8	4.5937	1	56248			23207	10601	13114	13115	29349	29349					0.10493980294063476
LIFTESKRK	9	Unmodified	_LIFTESKRK_					0	0	0		ENST00000446957.6_2_13:33110995-33111067:-|nuORF	ENST00000446957.6_2_13:33110995-33111067:-|nuORF	ENST00000446957.6_2_13:33110995-33111067:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7531127929688	2	561.337498	1120.66044	0.42886	0.00024073	-0.77624	-0.00043573	-0.34738	-0.000195	561.3369154648917	19.968	0.41174	19.913	19.678	20.09	-0.055693					21	14	2	0	0	0	0.26099	1	2357	2357		2.9952	1.3426	1	60606			23208	10601	13114	13115	29350	29350					0.10493980294063476
LIFYKKWE	8	Unmodified	_LIFYKKWE_					0	0	0		nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.6444702148438	2	563.81841	1125.62227	-0.044716	-2.5212E-05	0.486	0.00027402	0.44128	0.0002488	563.8185536004454	14.926	0.53997	14.861	14.618	15.158	-0.064413					26	18	2	0	0	0	0.34272	1	805	805		7.9102	1.187	1	282710			23209	1787	13115	13116	29351	29351					0.06448094379402391
LIFYRNEIR	9	Unmodified	_LIFYRNEIR_					0	0	0		ENST00000589791.5_1_19:2233841-2236647:-|nuORF;ENST00000588450.1_1_19:2233858-2234300:-|nuORF;ENSG00000104886|ENST00000326631|PLEKHJ1	ENST00000589791.5_1_19:2233841-2236647:-|nuORF	ENST00000589791.5_1_19:2233841-2236647:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.17431640625	3	408.568024	1222.68224	-0.16308	-6.6631E-05	-0.84987	-0.00034723	-1.0129	-0.00041386	408.56752645975365	16.894	0.6085	16.78	16.532	17.14	-0.11434					33	21	2	0	0	0	0.25949	1	1516	1516		4.897	0.36815	1	71539			23210	12165	13116	13117	29352	29352					0.07980785042627758
LIFYRNEIR	9	Unmodified	_LIFYRNEIR_					0	0	0		ENST00000589791.5_1_19:2233841-2236647:-|nuORF;ENST00000588450.1_1_19:2233858-2234300:-|nuORF;ENSG00000104886|ENST00000326631|PLEKHJ1	ENST00000589791.5_1_19:2233841-2236647:-|nuORF	ENST00000589791.5_1_19:2233841-2236647:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.1744079589844	3	408.568024	1222.68224	0.063954	2.6129E-05	-1.3249	-0.00054131	-1.2609	-0.00051518	408.567445413495	16.775	0.44291	16.712	16.526	16.969	-0.062532					25	15	2	0	0	0	0.2615	1	1489	1489		2.4985	0.75621	1	89452			23211	12165	13116	13117	29353	29353					0.07980785042627758
LIGEFYLK	8	Unmodified	_LIGEFYLK_					0	0	0			REV__ENST00000547055.1_2_12:70178596-70178761:+|nuORF	REV__ENST00000547055.1_2_12:70178596-70178761:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2465515136719	2	491.784036	981.553519	0.26295	0.00012932	-0.78563	-0.00038636	-0.52267	-0.00025704	491.782063222513	38.32	0.3147	38.32	38.092	38.406	0					17	10	2	0	0	0	0.32435	1	7911	7911		23.148	9.6405	1	118950	+		23212	22173	13117	13118	29354	29354					0.06200430079718444
LIGEFYLK	8	Unmodified	_LIGEFYLK_					0	0	0			REV__ENST00000547055.1_2_12:70178596-70178761:+|nuORF	REV__ENST00000547055.1_2_12:70178596-70178761:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	491.784036	981.553519	0.41612	0.00020464	-3.3669	-0.0016558	-2.9508	-0.0014512	491.7815211335104	38.153	0.35556	38.244	38.072	38.427	0.090881	-0.034139	-0.0005627	NaN	23.148	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90749	+		23213	22173	13117	13118							0.06200430079718444
LIGEFYLK	8	Unmodified	_LIGEFYLK_					0	0	0			REV__ENST00000547055.1_2_12:70178596-70178761:+|nuORF	REV__ENST00000547055.1_2_12:70178596-70178761:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.784036	981.553519	0.30115	0.0001481	-2.9089	-0.0014306	-2.6078	-0.0012825	491.78160240404077	38.172	0.42657	38.27	38.064	38.491	0.097527	-0.0080935	-0.00011219	NaN	23.148	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131600	+		23214	22173	13117	13118							0.06200430079718444
LIGPGRVLSI	10	Unmodified	_LIGPGRVLSI_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.72119140625	2	512.829309	1023.64407	0.42134	0.00021607	0.69646	0.00035717	1.1178	0.00057324	512.8296456044554	55.742	0.40685	55.723	55.508	55.915	-0.019081					26	14	2	0	0	0	0.28569	1	13362	13362		10.8	0	1	280360	+		23215	17138	13118	13119	29355	29355					0.13318899127989425
LIGRYSFSF	9	Unmodified	_LIGRYSFSF_					0	0	0		ENST00000480955.1_1_3:132379605-132379776:+|nuORF	ENST00000480955.1_1_3:132379605-132379776:+|nuORF	ENST00000480955.1_1_3:132379605-132379776:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2741088867188	2	545.290017	1088.56548	0.62561	0.00034114	0.36147	0.00019711	0.98708	0.00053825	545.290249983517	52.97	1.0344	52.961	52.654	53.688	-0.0096054					79	38	3	0	0	0	0.23007	1	12387	12387		19.257	2.3147	1	1546600			23216	11016	13119	13120	29356	29356					0.024740468228856116
LIGSELFAGL	10	Unmodified	_LIGSELFAGL_					0	0	0		nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8038024902344	2	510.292225	1018.5699	0.29979	0.00015298	-0.26625	-0.00013587	0.033538	1.7114E-05	510.29202902663576	75.498	0.48277	75.55	75.218	75.701	0.052361					23	17	2	0	0	0	0.31165	1	19410	19410		15.847	0	1	87420			23217	6449	13120	13121	29357	29357					0.061355112458159056
LIGSELFAGL	10	Unmodified	_LIGSELFAGL_					0	0	0		nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	nc|ENSG00000170381|O15041-2|SEMA3E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.80377197265625	2	510.292225	1018.5699	0.38226	0.00019506	-0.58544	-0.00029874	-0.20318	-0.00010368	510.2917694636932	75.529	0.53374	75.498	75.184	75.718	-0.031487					23	19	2	0	0	0	0.31165	1	19437	19437		10.824	0	1	80552			23218	6449	13120	13121	29358	29358					0.061355112458159056
LIGSVRQGQ	9	Unmodified	_LIGSVRQGQ_					0	0	0			REV__ENSG00000119203|ENST00000238112|CPSF3	REV__ENSG00000119203|ENST00000238112|CPSF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.27691650390625	2	479.277441	956.540328	0.16754	8.0296E-05	-0.638	-0.00030578	-0.47047	-0.00022548	479.2769722672002	76.583	0.56384	76.583	76.367	76.931	0					39	20	2	0	0	0	0.25066	1	19749	19749		7.2892	7.2892	1	527080	+		23219	15033	13121	13122	29359	29359					0.06031992020336929
LIGSVRQGQ	9	Unmodified	_LIGSVRQGQ_					0	0	0			REV__ENSG00000119203|ENST00000238112|CPSF3	REV__ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.27740478515625	2	479.277441	956.540328	0.20707	9.9242E-05	0.063652	3.0507E-05	0.27072	0.00012975	479.27735198558173	73.913	2.9622	73.965	73.226	76.188	0.052361					318	106	3	0	0	0	0.31038	1	19495	19495		7.2892	1.0834	1	5051400	+		23220	15033	13121	13122	29360	29360					0.06031992020336929
LIGVVCAFVT	10	Unmodified	_LIGVVCAFVT_					0	0	0		ENST00000487138.5_1_2:95940333-95943144:+|nuORF;ENST00000431567.5_1_2:95941253-95943708:+|nuORF;nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2	ENST00000487138.5_1_2:95940333-95943144:+|nuORF	ENST00000487138.5_1_2:95940333-95943144:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.807861328125	2	511.291171	1020.56779	0.30446	0.00015567	1.2927	0.00066092	1.5971	0.00081659	511.29185799221733	53.203	0.79923	53.193	52.863	53.662	-0.0096092					52	29	3	0	0	0	0.31165	1	12655	12655		6.7232	1.9672	1	1127900			23221	5155	13122	13123	29361	29361					0.05832759236352558
LIHHQKCHN	9	Unmodified	_LIHHQKCHN_					0	0	0		nc|ENSG00000171649|Q3SY52-3|ZIK1;nc|ENSG00000171649|Q3SY52-2|ZIK1;ENST00000307468.4_1_19:58095687-58102640:+|nuORF;ENSG00000171649|ENST00000597850|ZIK1	nc|ENSG00000171649|Q3SY52-3|ZIK1	nc|ENSG00000171649|Q3SY52-3|ZIK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.2866821289062	2	565.287817	1128.56108	-0.074029	-4.1848E-05	-1.3548	-0.00076586	-1.4288	-0.00080771	565.2869977326822	14.28	0.27595	14.214	14.098	14.373	-0.066068					17	9	2	0	0	0	0.35512	1	712	712		0.6015	0.076735	1	41373			23222	6566	13123	13124	29362	29362					0.001942591283523143
LIHHQKCHN	9	Unmodified	_LIHHQKCHN_					0	0	0		nc|ENSG00000171649|Q3SY52-3|ZIK1;nc|ENSG00000171649|Q3SY52-2|ZIK1;ENST00000307468.4_1_19:58095687-58102640:+|nuORF;ENSG00000171649|ENST00000597850|ZIK1	nc|ENSG00000171649|Q3SY52-3|ZIK1	nc|ENSG00000171649|Q3SY52-3|ZIK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	565.287817	1128.56108	-0.048161	-2.7225E-05	-1.8654	-0.0010545	-1.9135	-0.0010817	565.2866350068651	14.192	0.22187	14.192	14.113	14.335	0	-0.01099	-0.00037729	NaN	0.6015	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40416			23223	6566	13123	13124							0.001942591283523143
LIICSLQLNK	10	Unmodified	_LIICSLQLNK_					0	0	0			REV__ENST00000375640.7_1_6:31805209-31807430:+|nuORF	REV__ENST00000375640.7_1_6:31805209-31807430:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.325927734375	2	572.841559	1143.66857	0.38437	0.00022019	-3.698	-0.0021184	-3.3136	-0.0018982	572.8392513951353	70.439	0.25288	70.5	70.406	70.659	0.060783					9	8	2	0	0	0	0.3156	1	17883	17883		10.824	1.4765	1	54265	+		23224	20479	13124	13125	29363	29363					0.10247791219194369
LIINNQLD	8	Unmodified	_LIINNQLD_					0	0	0		nc|ENSG00000197658|Q8N4F4-3|SLC22A24;ENSG00000197658|ENST00000612278|SLC22A24	nc|ENSG00000197658|Q8N4F4-3|SLC22A24	nc|ENSG00000197658|Q8N4F4-3|SLC22A24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.7502746582031	2	471.766374	941.518196	0.086159	4.0647E-05	-0.30358	-0.00014322	-0.21742	-0.00010257	471.7661728139343	67.582	0.60175	67.582	67.309	67.911	0					44	20	3	0	0	0	0.42446	1	17061	17061		14.582	2.0501	1	446910			23225	7988	13125	13126	29364	29364					0.04509767551905952
LIIPHLRY	8	Unmodified	_LIIPHLRY_					0	0	0		nc|ENSG00000161905|P16050-2|ALOX15;ENSG00000161905|ENST00000293761|ALOX15	nc|ENSG00000161905|P16050-2|ALOX15	nc|ENSG00000161905|P16050-2|ALOX15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.72119140625	2	512.818744	1023.62294	0.72787	0.00037326	1.2728	0.00065272	2.0007	0.001026	513.3208997683881	56.019	0.38852	56	55.798	56.187	-0.019077					17	13	2	0	0	0	0.34046	1	13362	13362		9.3474	3.587	1	386170			23226	5535	13126	13127	29365	29365					0.11206933819130427
LIIPTGPKL	9	Unmodified	_LIIPTGPKL_					0	0	0			REV__ENSG00000221866|ENST00000321063|PLXNA4	REV__ENSG00000221866|ENST00000321063|PLXNA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.306396484375	2	476.315503	950.616454	-0.14063	-6.6985E-05	0.088277	4.2048E-05	-0.052354	-2.4937E-05	476.3155618962905	59.868	0.50277	59.868	59.533	60.035	0					29	17	2	0	0	0	0.25314	1	14561	14561		15.847	0	1	516170	+		23227	19095	13127	13128	29366	29366					0.13916995867759852
LIIPVDHYPKA	11	Unmodified	_LIIPVDHYPKA_					0	0	0		ENSG00000122707|ENST00000377966|RECK	ENSG00000122707|ENST00000377966|RECK	ENSG00000122707|ENST00000377966|RECK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3687744140625	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118	1	118	117.5	118.5	0								0	0	0	0.38126	1	30495	30495		1.1933	0.735	1				23228	3064	13128	13129	29367	29367					0.0961882249964674
LIISKLCVF	9	Unmodified	_LIISKLCVF_					0	0	0			REV__nc|ENSG00000091831|P03372-3|ESR1	REV__nc|ENSG00000091831|P03372-3|ESR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3167724609375	2	518.317189	1034.61982	0.48043	0.00024901	-0.28166	-0.00014599	0.19876	0.00010302	518.3169614341426	74.243	2.8627	74.243	72.506	75.369	0					186	101	2	0	0	0	0.32415	1	19352	19352		5.2307	0	1	2040100	+		23229	14070	13129	13130	29368	29368					0.10389922650097105
LIITQQKRLL	10	Unmodified	_LIITQQKRLL_					0	0	0			REV__ENST00000468312.1_1_17:40370167-40384145:-|nuORF	REV__ENST00000468312.1_1_17:40370167-40384145:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.5887451171875	3	409.271207	1224.79179	0.030783	1.2599E-05	-0.28595	-0.00011703	-0.25516	-0.00010443	409.27108487613737	39.552	1.0456	39.644	39.105	40.151	0.09267					102	36	4	0	0	0	0.31876	1	8461	8461		4.1895	0	1	1489600	+		23230	15314	13130	13131	29369	29369					0.18838790661993698
LIIYYVWMK	9	Unmodified	_LIIYYVWMK_					0	0	0		ENST00000272067.10_2_2:272273-275200:+|nuORF	ENST00000272067.10_2_2:272273-275200:+|nuORF	ENST00000272067.10_2_2:272273-275200:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.23162841796875	3	410.231473	1227.67259	-0.10209	-4.1879E-05	0.91826	0.0003767	0.81618	0.00033482	410.2319437242993	103.06	0.20682	103.06	102.92	103.13	0.0082626					39	27	2	0	0	0	0.26127	1	27416	27416		2.7352	0	1	4530400			23231	9084	13131	13132	29370	29370					0.06785880712891412
LIKAHELKD	9	Unmodified	_LIKAHELKD_					0	0	0		ENST00000430458.1_1_6:108616211-108666050:+|nuORF;ENSG00000135537|ENST00000368977|AFG1L	ENST00000430458.1_1_6:108616211-108666050:+|nuORF	ENST00000430458.1_1_6:108616211-108666050:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2528076171875	2	533.816399	1065.61824	0.77895	0.00041582	0.041311	2.2052E-05	0.82026	0.00043787	533.8162908294262	47.318	0.40866	47.318	47.084	47.493	0					25	14	2	0	0	0	0.22596	1	10779	10779		15.847	4.2069	1	227410			23232	3881	13132	13133	29371	29371					0.08806004885695984
LIKELLHHKS	10	Unmodified	_LIKELLHHKS_					0	0	0		L1PA15_dup628|chr2:34747347-34748523:+|1.664451808161501|0.1605763786806046|3.37|528.0|3|1|sense	L1PA15_dup628|chr2:34747347-34748523:+|1.664451808161501|0.1605763786806046|3.37|528.0|3|1|sense	L1PA15_dup628|chr2:34747347-34748523:+|1.664451808161501|0.1605763786806046|3.37|528.0|3|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.91827392578125	3	406.583674	1216.72919	-0.27263	-0.00011085	0.93423	0.00037984	0.6616	0.000269	406.5840405054096	103.06	0.23303	103.07	102.89	103.12	0.0082626					43	31	2	0	0	0	0.40262	1	27408	27408		1.4551	0.12547	1	4415900			23233	12474	13133	13134	29372	29372					0.12949644593800258
LIKELLHHKS	10	Unmodified	_LIKELLHHKS_					0	0	0		L1PA15_dup628|chr2:34747347-34748523:+|1.664451808161501|0.1605763786806046|3.37|528.0|3|1|sense	L1PA15_dup628|chr2:34747347-34748523:+|1.664451808161501|0.1605763786806046|3.37|528.0|3|1|sense	L1PA15_dup628|chr2:34747347-34748523:+|1.664451808161501|0.1605763786806046|3.37|528.0|3|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.91827392578125	3	406.583674	1216.72919	-0.27182	-0.00011052	0.47007	0.00019112	0.19825	8.0606E-05	406.58383999069775	103.72	0.42398	103.72	103.67	104.1	0.0082703					90	56	2	0	0	0	0.40262	2	27563	27563;27611		1.4551	0.82829	1	1943000			23234	12474	13133	13134	29373;29374	29373					0.12949644593800258
LIKELLHHKS	10	Unmodified	_LIKELLHHKS_					0	0	0		L1PA15_dup628|chr2:34747347-34748523:+|1.664451808161501|0.1605763786806046|3.37|528.0|3|1|sense	L1PA15_dup628|chr2:34747347-34748523:+|1.664451808161501|0.1605763786806046|3.37|528.0|3|1|sense	L1PA15_dup628|chr2:34747347-34748523:+|1.664451808161501|0.1605763786806046|3.37|528.0|3|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.58392333984375	3	406.583674	1216.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.9	1	103.9	103.4	104.4	-0.0011139								0	0	0	0.37807	1	27622	27622		1.4551	0	1				23235	12474	13133	13134	29375	29375					0.12949644593800258
LIKELLHHKS	10	Unmodified	_LIKELLHHKS_					0	0	0		L1PA15_dup628|chr2:34747347-34748523:+|1.664451808161501|0.1605763786806046|3.37|528.0|3|1|sense	L1PA15_dup628|chr2:34747347-34748523:+|1.664451808161501|0.1605763786806046|3.37|528.0|3|1|sense	L1PA15_dup628|chr2:34747347-34748523:+|1.664451808161501|0.1605763786806046|3.37|528.0|3|1|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	406.583674	1216.72919	-0.48108	-0.0001956	0.95615	0.00038875	0.47507	0.00019316	406.58401446540296	103.51	0.019241	103.51	103.5	103.52	0	-0.10577	0.00050546	NaN	1.4551	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2314000			23236	12474	13133	13134							0.12949644593800258
LIKHQQLS	8	Unmodified	_LIKHQQLS_					0	0	0		ENST00000421682.1_1_3:50103854-50112609:+|nuORF;ENST00000454079.5_1_3:50099373-50114563:+|nuORF;ENST00000434592.5_1_3:50097096-50127827:+|nuORF;nc|ENSG00000004534|P78332-2|RBM6;ENSG00000004534|ENST00000266022|RBM6	ENST00000421682.1_1_3:50103854-50112609:+|nuORF	ENST00000421682.1_1_3:50103854-50112609:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.8267517089844	2	483.790184	965.565815	0.47028	0.00022752	-0.22922	-0.0001109	0.24105	0.00011662	483.78998475280866	40.039	0.59001	40.131	39.858	40.448	0.09267					36	20	2	0	0	0	0.34046	1	8438	8438		14.582	4.3983	1	530730			23237	311	13134	13135	29376	29376					0.08165466542754984
LIKLEEKGPTK	11	Unmodified	_LIKLEEKGPTK_					0	0	0			REV__ENST00000569916.1_1_16:58633342-58663636:-|nuORF	REV__ENST00000569916.1_1_16:58633342-58663636:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.884033203125	2	628.384645	1254.75474	-0.037286	-2.343E-05	-2.0531	-0.0012901	-2.0904	-0.0013135	628.3839973197938	104.05	0.12137	104.05	104	104.12	0					23	15	2	0	0	0	0.33175	1	27620	27620		4.897	0	1	369890	+		23238	22406	13135	13136	29377	29377					0.1375507432555878
LIKMAFVKDAN	11	Unmodified	_LIKMAFVKDAN_					0	0	0			REV__nc|ENSG00000143776|Q5VT25-3|CDC42BPA	REV__nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.3327026367188	2	625.352291	1248.69003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.418	1	68.418	67.918	68.918	0								0	0	0	0.32191	1	17235	17235		14.405	2.1647	1		+		23239	16199	13136	13137	29378	29378					0.07563176247936099
LIKMHKCTF	9	Unmodified	_LIKMHKCTF_					0	0	0		ENSG00000163884|ENST00000296233|KLF15	ENSG00000163884|ENST00000296233|KLF15	ENSG00000163884|ENST00000296233|KLF15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3341674804688	2	560.803922	1119.59329	0.52343	0.00029354	-0.39615	-0.00022216	0.12728	7.1382E-05	561.3036393963419	78.907	1.963	78.965	78.139	80.102	0.058151					130	78	2	0	0	0	0.19839	1	20187	20187		28.487	1.6032	1	180930			23240	5751	13137	13138	29379	29379					0.03827910487098052
LIKPNRIL	8	Unmodified	_LIKPNRIL_					0	0	0			REV__ENSG00000073734|ENST00000650372|ABCB11	REV__ENSG00000073734|ENST00000650372|ABCB11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.8267517089844	2	483.826569	965.638586	0.28488	0.00013783	0.4661	0.00022551	0.75098	0.00036335	483.8266687752389	39.679	1.0614	39.771	39.47	40.531	0.09267					89	37	4	0	0	0	0.28861	1	8438	8438		32.117	3.6301	1	2579700	+		23241	13780	13138	13139	29380	29380					0.1543922033616809
LIKQPSTERAS	11	Unmodified	_LIKQPSTERAS_					0	0	0			REV__nc|ENSG00000124196|Q9H1H1-2|GTSF1L	REV__nc|ENSG00000124196|Q9H1H1-2|GTSF1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.5666809082031	3	410.56646	1228.67755	0.056417	2.3163E-05	-1.4627	-0.00060055	-1.4063	-0.00057739	410.56606352154944	103.17	0.2392	103.17	102.97	103.21	-0.0011139					37	29	2	0	0	0	0.47303	1	27422	27422		1.6479	0.31824	1	4021800	+		23242	15217	13139	13140	29381	29381					0.07235856109241467
LILACLRP	8	Unmodified	_LILACLRP_					0	0	0		ENST00000589292.1_1_18:57677720-57677828:-|nuORF	ENST00000589292.1_1_18:57677720-57677828:-|nuORF	ENST00000589292.1_1_18:57677720-57677828:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.779541015625	2	449.780773	897.546994	-1.0415	-0.00046844	-0.768	-0.00034543	-1.8095	-0.00081387	449.7803838028226	34.815	1.3562	34.815	34.5	35.856	0					92	48	3	0	0	0	0.45169	1	6909	6909		5.2307	0	1	1025200			23243	12160	13140	13141	29382	29382					0.09412213647340195
LILACLRP	8	Unmodified	_LILACLRP_					0	0	0		ENST00000589292.1_1_18:57677720-57677828:-|nuORF	ENST00000589292.1_1_18:57677720-57677828:-|nuORF	ENST00000589292.1_1_18:57677720-57677828:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	449.780773	897.546994	-1.0415	-0.00046844	-0.768	-0.00034543	-1.8095	-0.00081387	449.7803838028226	34.815	1.3562	34.815	34.5	35.856	0	0.005804	9.7067E-05	NaN	5.2307	92	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1025200			23244	12160	13140	13141							0.09412213647340195
LILACLRP	8	Unmodified	_LILACLRP_					0	0	0		ENST00000589292.1_1_18:57677720-57677828:-|nuORF	ENST00000589292.1_1_18:57677720-57677828:-|nuORF	ENST00000589292.1_1_18:57677720-57677828:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	449.780773	897.546994	-1.2776	-0.00057462	-0.67634	-0.0003042	-1.9539	-0.00087882	449.7803755339939	34.727	1.0114	34.802	34.47	35.481	0.075306	-0.0074313	0.00017952	NaN	5.2307	84	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1185000			23245	12160	13140	13141							0.09412213647340195
LILACLRP	8	Unmodified	_LILACLRP_					0	0	0		ENST00000589292.1_1_18:57677720-57677828:-|nuORF	ENST00000589292.1_1_18:57677720-57677828:-|nuORF	ENST00000589292.1_1_18:57677720-57677828:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	449.780773	897.546994	-0.63483	-0.00028554	-1.1406	-0.00051301	-1.7754	-0.00079855	449.78014891095074	34.734	1.0212	34.811	34.474	35.495	0.077377	0.0016272	-0.0002381	NaN	5.2307	81	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1063500			23246	12160	13140	13141							0.09412213647340195
LILCPEKKV	9	Unmodified	_LILCPEKKV_					0	0	0		ENST00000482134.5_2_2:53992641-53994492:-|nuORF	ENST00000482134.5_2_2:53992641-53994492:-|nuORF	ENST00000482134.5_2_2:53992641-53994492:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2982177734375	2	521.820095	1041.62564	0.4858	0.0002535	-0.046717	-2.4378E-05	0.43909	0.00022912	521.8201927990673	52.393	0.44465	52.393	52.211	52.656	0					24	15	2	0	0	0	0.2451	1	12367	12367		15.847	15.847	1	392120			23247	11040	13141	13142	29383	29383					0.10649021161771088
LILCPEKKV	9	Unmodified	_LILCPEKKV_					0	0	0		ENST00000482134.5_2_2:53992641-53994492:-|nuORF	ENST00000482134.5_2_2:53992641-53994492:-|nuORF	ENST00000482134.5_2_2:53992641-53994492:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2980346679688	2	521.820095	1041.62564	0.27293	0.00014242	-0.17026	-8.8843E-05	0.10267	5.3577E-05	521.8200848369195	52.507	0.47103	52.506	52.246	52.717	-0.00080872					26	16	2	0	0	0	0.24913	1	12376	12376		12.532	12.532	1	708060			23248	11040	13141	13142	29384	29384					0.10649021161771088
LILHPIPAK	9	Unmodified	_LILHPIPAK_					0	0	0			REV__ENSG00000169306|ENST00000378993|IL1RAPL1	REV__ENSG00000169306|ENST00000378993|IL1RAPL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2904968261719	2	501.328945	1000.64334	0.5328	0.00026711	-2.3904	-0.0011984	-1.8576	-0.00093126	501.32749848978915	75.056	0.4704	75.056	74.821	75.291	0					30	16	2	0	0	0	0.21137	1	19225	19225		24.674	3.8027	1	279610	+		23249	17510	13142	13143	29385	29385					0.14304104478935642
LILHPIPAK	9	Unmodified	_LILHPIPAK_					0	0	0			REV__ENSG00000169306|ENST00000378993|IL1RAPL1	REV__ENSG00000169306|ENST00000378993|IL1RAPL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.29150390625	2	501.328945	1000.64334	0.62872	0.0003152	-2.5146	-0.0012606	-1.8859	-0.00094544	501.3273751147126	75.105	0.49895	75.074	74.868	75.367	-0.031479					28	18	2	0	0	0	0.23147	1	19229	19229		19.439	9.2556	1	187800	+		23250	17510	13142	13143	29386	29386					0.14304104478935642
LILILSMIF	9	Unmodified	_LILILSMIF_					0	0	0		nc|ENSG00000165509|Q8TD91-2|MAGEC3;ENSG00000165509|ENST00000298296|MAGEC3	nc|ENSG00000165509|Q8TD91-2|MAGEC3	nc|ENSG00000165509|Q8TD91-2|MAGEC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8351440429688	2	531.835214	1061.65588	0.22824	0.00012139	-0.093722	-4.9845E-05	0.13452	7.1544E-05	531.8350286146901	96.463	0.84854	96.463	96.202	97.05	0					194	80	3	0	0	0	0.33018	1	25845	25845		4.3292	2.0265	1	666750			23251	5970	13143	13144	29387	29387					0.1275137982695469
LILILSMIF	9	Unmodified	_LILILSMIF_					0	0	0		nc|ENSG00000165509|Q8TD91-2|MAGEC3;ENSG00000165509|ENST00000298296|MAGEC3	nc|ENSG00000165509|Q8TD91-2|MAGEC3	nc|ENSG00000165509|Q8TD91-2|MAGEC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8349609375	2	531.835214	1061.65588	0.23379	0.00012434	-0.075854	-4.0342E-05	0.15794	8.3998E-05	531.8350241600219	96.373	0.94173	96.45	96.078	97.02	0.077408					218	90	3	0	0	0	0.33018	2	25709	25709;25851		4.3292	4.3292	1	804100			23252	5970	13143	13144	29388;29389	29388					0.1275137982695469
LILLINSSF	9	Unmodified	_LILLINSSF_					0	0	0			REV__nc|ENSG00000163867|O95789-4|ZMYM6	REV__nc|ENSG00000163867|O95789-4|ZMYM6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7877197265625	2	510.310418	1018.60628	0.1198	6.1133E-05	-2.109	-0.0010763	-1.9892	-0.0010151	510.3091997900342	23.313	0.42084	23.313	23.173	23.593	0					23	14	3	0	0	0	0.24913	1	3457	3457		12.532	1.7076	1	34532	+		23253	23060	13144	13145	29390	29390					0.09772388142528143
LILLINSSF	9	Unmodified	_LILLINSSF_					0	0	0			REV__nc|ENSG00000163867|O95789-4|ZMYM6	REV__nc|ENSG00000163867|O95789-4|ZMYM6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7877197265625	2	510.310418	1018.60628	0.134	6.8384E-05	-3.4883	-0.0017801	-3.3543	-0.0017117	510.308510711188	23.452	0.46943	23.364	23.216	23.685	-0.08761					26	16	3	0	0	0	0.24913	1	3497	3497		12.532	1.7076	1	46381	+		23254	23060	13144	13145	29391	29391					0.09772388142528143
LILPGEELIY	10	Unmodified	_LILPGEELIY_					0	0	0		ENST00000475693.1_1_2:242607884-242611676:+|nuORF	ENST00000475693.1_1_2:242607884-242611676:+|nuORF	ENST00000475693.1_1_2:242607884-242611676:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.7969360351562	2	580.33409	1158.65363	0.29995	0.00017407	-0.031361	-1.82E-05	0.26859	0.00015587	580.3337559929422	64.069	1.5756	64.059	63.745	65.321	-0.0095291					82	57	2	0	0	0	0.31267	1	15870	15870		10.074	0.6908	1	232580			23255	10939	13145	13146	29392	29392					0.08064622622873685
LILPNKFWF	9	Unmodified	_LILPNKFWF_					0	0	0			REV__ENST00000420010.6_1_16:84440201-84449139:+|nuORF	REV__ENST00000420010.6_1_16:84440201-84449139:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3439331054688	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.67	1	115.67	115.17	116.17	0								0	0	0	0.26704	1	29971	29971		0.6015	0.076735	1		+		23256	20846	13146	13147	29393	29393					0.08828373650408139
LILPRLVL	8	Unmodified	_LILPRLVL_					0	0	0		ENST00000544803.5_1_2:176805763-176812258:-|nuORF	ENST00000544803.5_1_2:176805763-176812258:-|nuORF	ENST00000544803.5_1_2:176805763-176812258:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.833740234375	2	468.833863	935.653173	0.14194	6.6548E-05	-0.023898	-1.1204E-05	0.11805	5.5344E-05	468.8337895508939	74.291	0.50732	74.291	74.029	74.537	0					22	16	2	0	0	0	0.32313	1	19002	19002		28.173	1.832	1	470110			23257	11748	13147	13148	29394	29394					0.18277292484310692
LILPRLVL	8	Unmodified	_LILPRLVL_					0	0	0		ENST00000544803.5_1_2:176805763-176812258:-|nuORF	ENST00000544803.5_1_2:176805763-176812258:-|nuORF	ENST00000544803.5_1_2:176805763-176812258:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.8338928222656	2	468.833863	935.653173	0.044384	2.0809E-05	0.1143	5.3588E-05	0.15869	7.4397E-05	468.8336772161317	74.149	0.42776	74.201	74.06	74.488	0.052368					20	14	2	0	0	0	0.2705	1	18983	18983		34.187	2.0704	1	287900			23258	11748	13147	13148	29395	29395					0.18277292484310692
LILPRLVL	8	Unmodified	_LILPRLVL_					0	0	0		ENST00000544803.5_1_2:176805763-176812258:-|nuORF	ENST00000544803.5_1_2:176805763-176812258:-|nuORF	ENST00000544803.5_1_2:176805763-176812258:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.8338623046875	2	468.833863	935.653173	0.28729	0.00013469	-0.61051	-0.00028623	-0.32323	-0.00015154	468.83369523743295	74.313	0.33339	74.283	74.111	74.444	-0.030655					14	11	2	0	0	0	0.32313	1	19059	19059		28.173	1.832	1	218540			23259	11748	13147	13148	29396	29396					0.18277292484310692
LILQEVASF	9	Unmodified	_LILQEVASF_					0	0	0		ENSG00000157399|ENST00000381134|ARSL	ENSG00000157399|ENST00000381134|ARSL	ENSG00000157399|ENST00000381134|ARSL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2823181152344	2	510.292225	1018.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.095	1	89.095	88.595	89.595	0								0	0	0	0.21726	1	23562	23562		16.942	5.302	1				23260	5303	13148	13149	29397	29397					0.061355112458159056
LILRHNNIT	9	Unmodified	_LILRHNNIT_					0	0	0		ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.32763671875	2	547.327465	1092.64038	0.86865	0.00047544	0.16816	9.204E-05	1.0368	0.00056748	547.3275001761574	50.702	0.78787	50.702	50.267	51.055	0					63	28	3	0	0	0	0.068501	1	11764	11764		46.021	4.1813	1	492280			23261	4218	13149	13150	29398	29398					0.0977622935411091
LILRHNNIT	9	Unmodified	_LILRHNNIT_					0	0	0		ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	ENSG00000139211|ENST00000550413|AMIGO2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	547.327465	1092.64038	1.0178	0.00055706	0.20545	0.00011245	1.2232	0.00066951	547.3274168412728	50.645	0.82259	50.69	50.268	51.09	0.044891	-0.019373	3.5348E-05	NaN	46.021	59	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	509360			23262	4218	13149	13150							0.0977622935411091
LILRKLGPV	9	Unmodified	_LILRKLGPV_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.F1622Lfs*17|1|0.09|ENSG00000120800|chr12:101346566-101346567|-/TTTAGTATCGTATTCTC|frameshift_variant;ENST00000551825.1_1_12:101673946-101684681:+|nuORF	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2800598144531	2	504.850045	1007.68554	0.7085	0.00035769	0.066349	3.3496E-05	0.77485	0.00039118	504.84994086753557	47.582	0.36964	47.625	47.401	47.771	0.04332					21	13	3	0	0	0	0.25811	1	10815	10815		0.6015	0	1	189980			23263	2965	13150	13151	29399	29399					0.18200079887333231
LILSSYGLI	9	Unmodified	_LILSSYGLI_					0	0	0		ENSG00000177462|ENST00000641945|OR2T8;ENSG00000177212|ENST00000641220|OR2T33;ENSG00000177201|ENST00000641276|OR2T12	ENSG00000177462|ENST00000641945|OR2T8	ENSG00000177462|ENST00000641945|OR2T8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.336669921875	2	489.797143	977.579734	0.32631	0.00015982	1.0722	0.00052514	1.3985	0.00068496	489.7968893640931	75.645	0.56604	75.697	75.295	75.861	0.052361					33	20	2	0	0	0	0.24739	1	19404	19404		13.508	0	1	90115			23264	6973	13151	13152	29400	29400					0.09004699251204329
LILVIVKKKKK	11	Unmodified	_LILVIVKKKKK_					0	0	0		ENST00000393214.2_1_X:73596212-73596416:-|nuORF	ENST00000393214.2_1_X:73596212-73596416:-|nuORF	ENST00000393214.2_1_X:73596212-73596416:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.31085205078125	3	437.326764	1308.95846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.79	1	112.78	112.28	113.28	-0.017303								0	0	0	0.3823	1	29333	29333		0	0	1				23265	10041	13152	13153	29401	29401					0.3163426355768024
LIMALIQTVG	10	Unmodified	_LIMALIQTVG_					0	0	0			REV__nc|ENSG00000106025|O95859-2|TSPAN12	REV__nc|ENSG00000106025|O95859-2|TSPAN12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3297119140625	2	529.817553	1057.62055	0.56721	0.00030052	3.3031	0.00175	3.8703	0.0020505	529.8191280875492	43.317	0.36304	43.394	43.291	43.654	0.077518					13	12	2	0	0	0	0.318	1	9483	9483		3.9444	0	1	103370	+		23266	14504	13153	13154	29402	29402					0.09404717299162257
LIMFSPSI	8	Unmodified	_LIMFSPSI_					0	0	0		ENST00000288532.10_1_12:120954522-120960028:-|nuORF	ENST00000288532.10_1_12:120954522-120960028:-|nuORF	ENST00000288532.10_1_12:120954522-120960028:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2519226074219	2	454.251514	906.488476	0.24859	0.00011292	0.44877	0.00020385	0.69736	0.00031678	454.2517635773559	72.966	0.58464	72.966	72.667	73.251	0					27	20	2	0	0	0	0.42446	1	18645	18645		14.582	0	1	141510			23267	9146	13154	13155	29403	29403					0.03149112282221722
LIMFSPSI	8	Unmodified	_LIMFSPSI_					0	0	0		ENST00000288532.10_1_12:120954522-120960028:-|nuORF	ENST00000288532.10_1_12:120954522-120960028:-|nuORF	ENST00000288532.10_1_12:120954522-120960028:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	454.251514	906.488476	0.19162	8.7044E-05	0.26821	0.00012184	0.45983	0.00020888	454.25156240687323	72.758	0.54619	72.812	72.681	73.227	0.053833	-0.077067	-0.00010514	NaN	14.582	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135750			23268	9146	13154	13155							0.03149112282221722
LIMVRFVHRPF	11	Unmodified	_LIMVRFVHRPF_					0	0	0			REV__nc|ENSG00000197448|Q9Y2Q3-2|GSTK1	REV__nc|ENSG00000197448|Q9Y2Q3-2|GSTK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2897033691406	3	472.276187	1413.80673	0.38839	0.00018343	-0.84152	-0.00039743	-0.45313	-0.000214	472.27612166383676	54.265	0.71297	54.328	53.876	54.589	0.063206					46	26	3	0	0	0	0.33326	1	12738	12738		0.50596	0	1	257560	+		23269	23154	13155	13156	29404	29404					0.11637959258337105
LINAGVLYL	9	Unmodified	_LINAGVLYL_					0	0	0		ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000118707|Q9GZN2-2|TGIF2;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF	ENSG00000101084|ENST00000344795|RAB5IF	ENSG00000101084|ENST00000344795|RAB5IF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2973937988281	2	488.29731	974.580068	0.49782	0.00024309	-0.54925	-0.0002682	-0.051426	-2.5111E-05	488.2970783586781	79.069	0.56379	79.069	78.802	79.366	0					44	23	2	0	0	0	0.155	1	20498	20498		30.225	0	1	255990			23270	1661	13156	13157	29405	29405					0.0917611897103825
LINAGVLYL	9	Unmodified	_LINAGVLYL_					0	0	0		ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000118707|Q9GZN2-2|TGIF2;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF	ENSG00000101084|ENST00000344795|RAB5IF	ENSG00000101084|ENST00000344795|RAB5IF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	488.29731	974.580068	0.46098	0.0002251	-0.88603	-0.00043264	-0.42504	-0.00020755	488.29679029703266	78.914	0.5826	78.972	78.787	79.369	0.058151	-0.063026	-0.00018944	NaN	30.225	47	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205490			23271	1661	13156	13157							0.0917611897103825
LINAGVLYL	9	Unmodified	_LINAGVLYL_					0	0	0		ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000118707|Q9GZN2-2|TGIF2;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF	ENSG00000101084|ENST00000344795|RAB5IF	ENSG00000101084|ENST00000344795|RAB5IF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	488.29731	974.580068	0.58753	0.00028689	-0.8973	-0.00043815	-0.30977	-0.00015126	488.2967650218164	79.093	0.5052	79.064	78.773	79.278	-0.028931	0.029363	-0.00020045	NaN	30.225	39	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195150			23272	1661	13156	13157							0.0917611897103825
LINDDSPNLDF	11	Unmodified	_LINDDSPNLDF_					0	0	0			REV__nc|ENSG00000004399|Q9Y4D7-2|PLXND1	REV__nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.53509521484375	3	421.534825	1261.58265	-0.28962	-0.00012208	0.49491	0.00020862	0.20529	8.6538E-05	421.53507035487826	27.63	1.0693	27.619	27.16	28.23	-0.01156					73	37	3	0	0	0	0.44088	1	4679	4679		5.8681	0.82062	1	651130	+		23273	13329	13157	13158	29406	29406					-0.037681221526327136
LINLQGKIL	9	Unmodified	_LINLQGKIL_					0	0	0		ENST00000599335.5_1_19:39959399-39965382:+|nuORF;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H	ENST00000599335.5_1_19:39959399-39965382:+|nuORF	ENST00000599335.5_1_19:39959399-39965382:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7945556640625	2	506.331685	1010.64882	0.19455	9.8508E-05	0.30942	0.00015667	0.50397	0.00025518	506.3318790696266	69.881	0.41915	69.947	69.741	70.16	0.06604					21	14	2	0	0	0	0.25417	1	17717	17717		8.5933	8.5933	1	168230			23274	7843	13158	13159	29407	29407					0.14391783270752967
LINQHGKIK	9	Unmodified	_LINQHGKIK_					0	0	0			REV__ENSG00000185798|ENST00000332629|WDR53	REV__ENSG00000185798|ENST00000332629|WDR53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8065185546875	2	525.824558	1049.63456	0.27591	0.00014508	-0.058306	-3.0659E-05	0.2176	0.00011442	525.8243976169737	39.205	0.36079	39.298	39.137	39.497	0.09267					19	12	2	0	0	0	0.25066	1	8279	8279		11.64	0	1	114200	+		23275	18409	13159	13160	29408	29408					0.11173130842439605
LINSNKEKF	9	Unmodified	_LINSNKEKF_					0	0	0		ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1	ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8248901367188	2	546.806031	1091.59751	0.40689	0.00022249	0.43161	0.00023601	0.8385	0.0004585	546.8060510004317	51.868	0.59085	51.868	51.648	52.239	0					36	21	3	0	0	0	0.26879	1	12244	12244		13.508	1.2672	1	371270			23276	6510	13160	13161	29409	29409					0.05537414506034111
LINSYKLYLT	10	Unmodified	_LINSYKLYLT_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.20477294921875	3	409.904301	1226.69108	0.081443	3.3384E-05	1.0682	0.00043784	1.1496	0.00047123	410.2390521168844	37.476	0.58437	37.569	37.448	38.032	0.093018					39	21	2	0	0	0	0.31538	1	7721	7721		3.3196	0	1	156990	+		23277	16560	13161	13162	29410	29410					0.08679713888454899
LIPAQPQLL	9	Unmodified	_LIPAQPQLL_					0	0	0		ENSG00000105127|ENST00000269701|AKAP8;ENST00000598597.6_1_19:15465728-15479935:-|nuORF	ENSG00000105127|ENST00000269701|AKAP8	ENSG00000105127|ENST00000269701|AKAP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.8108215332031	2	496.810585	991.606617	0.31183	0.00015492	0.44398	0.00022057	0.75581	0.00037549	496.8106981530542	76.418	0.84184	76.418	76.141	76.983	0					90	30	4	0	0	0	0.055495	1	19729	19729		50.855	2.5092	1	4258000			23278	1947	13162	13163	29411	29411					0.1104780786236006
LIPARTLVK	9	Unmodified	_LIPARTLVK_					0	0	0			REV__ENSG00000145863|ENST00000274545|GABRA6	REV__ENSG00000145863|ENST00000274545|GABRA6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.851806640625	2	505.839677	1009.6648	0.24666	0.00012477	-0.53946	-0.00027288	-0.2928	-0.00014811	505.83925003237	46.323	0.35432	46.383	46.18	46.534	0.059834					22	12	2	0	0	0	0.25202	1	10405	10405		10.824	0	1	504600	+		23279	16313	13163	13164	29412	29412					0.16035489507646616
LIPCIKWV	8	Unmodified	_LIPCIKWV_					0	0	0			REV__chr5:1436090-1441359|142|12.65|0.01|11.19|-|2|None,SLC6A3|1	REV__chr5:1436090-1441359|142|12.65|0.01|11.19|-|2|None,SLC6A3|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2904357910156	2	486.290974	970.567395	-0.14007	-6.8116E-05	-0.34432	-0.00016744	-0.48439	-0.00023555	486.2907349143785	12.689	0.35679	12.622	12.406	12.763	-0.067496					13	11	2	0	0	0	0.45015	1	209	209		5.7604	0	1	134790	+		23280	13201	13164	13165	29413	29413					0.0809338430714206
LIPDENPSSF	10	Unmodified	_LIPDENPSSF_					0	0	0		ENST00000580209.1_1_18:29617215-29646074:+|nuORF;ENSG00000101695|ENST00000217740|RNF125	ENST00000580209.1_1_18:29617215-29646074:+|nuORF	ENST00000580209.1_1_18:29617215-29646074:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7828979492188	2	559.771854	1117.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.976	1	69.976	69.476	70.476	0								0	0	0	0.35754	1	17711	17711		11.64	2.2572	1				23281	1717	13165	13166	29414	29414					-0.024908748644747902
LIPEEFFQF	9	Unmodified	_LIPEEFFQF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.2994995117188	2	585.297507	1168.58046	0.19243	0.00011263	1.2654	0.00074065	1.4578	0.00085327	585.2989188001134	93.864	0.86123	93.864	93.563	94.424	0					145	69	3	0	0	0	0.10059	7	25086	24946;24986;25035;25074;25086;25113;25153		38.176	24.27	1	202460			23282	2725	13166	13167	29415;29416;29417;29418;29419;29420;29421	29419					0.002914939002266692
LIPEEFFQF	9	Unmodified	_LIPEEFFQF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8135375976562	2	585.297507	1168.58046	0.45861	0.00026842	0.88312	0.00051689	1.3417	0.00078531	585.2985303285683	93.809	0.81166	93.808	93.552	94.363	-0.00051117					127	58	3	0	0	0	0.023967	8	25023	24927;24974;24988;25023;25032;25073;25084;25128		62.573	62.573	1	310710			23283	2725	13166	13167	29422;29423;29424;29425;29426;29427;29428;29429	29425					0.002914939002266692
LIPENRLLL	9	Unmodified	_LIPENRLLL_					0	0	0		nc|ENSG00000089091|Q9NVP4-2|DZANK1;nc|ENSG00000089091|Q9NVP4-4|DZANK1;nc|ENSG00000089091|Q9NVP4-5|DZANK1;nc|ENSG00000089091|Q9NVP4|DZANK1;ENSG00000089091|ENST00000699568|DZANK1	nc|ENSG00000089091|Q9NVP4-2|DZANK1	nc|ENSG00000089091|Q9NVP4-2|DZANK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8426513671875	2	540.842416	1079.67028	0.45719	0.00024727	0.35602	0.00019255	0.81321	0.00043982	540.8424430522876	67.023	1.0572	67.023	66.453	67.51	0					84	36	3	0	0	0	0.090256	1	16800	16800		57.722	0.47288	1	838630			23284	1347	13167	13168	29430	29430					0.13363168299474637
LIPENRLLL	9	Unmodified	_LIPENRLLL_					0	0	0		nc|ENSG00000089091|Q9NVP4-2|DZANK1;nc|ENSG00000089091|Q9NVP4-4|DZANK1;nc|ENSG00000089091|Q9NVP4-5|DZANK1;nc|ENSG00000089091|Q9NVP4|DZANK1;ENSG00000089091|ENST00000699568|DZANK1	nc|ENSG00000089091|Q9NVP4-2|DZANK1	nc|ENSG00000089091|Q9NVP4-2|DZANK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8425903320312	2	540.842416	1079.67028	0.45621	0.00024674	0.37658	0.00020367	0.83279	0.00045041	540.8424946624867	66.924	1.1403	67.008	66.441	67.582	0.083824					95	40	4	0	0	0	0.10058	1	16765	16765		45.7	0	1	810750			23285	1347	13167	13168	29431	29431					0.13363168299474637
LIPENRLLL	9	Unmodified	_LIPENRLLL_					0	0	0		nc|ENSG00000089091|Q9NVP4-2|DZANK1;nc|ENSG00000089091|Q9NVP4-4|DZANK1;nc|ENSG00000089091|Q9NVP4-5|DZANK1;nc|ENSG00000089091|Q9NVP4|DZANK1;ENSG00000089091|ENST00000699568|DZANK1	nc|ENSG00000089091|Q9NVP4-2|DZANK1	nc|ENSG00000089091|Q9NVP4-2|DZANK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8427734375	2	540.842416	1079.67028	0.36311	0.00019639	0.51531	0.0002787	0.87843	0.00047509	540.8425263925204	67.023	1.1357	67.008	66.484	67.62	-0.014709					82	39	3	0	0	0	0.16853	1	16804	16804		31.268	0	1	796670			23286	1347	13167	13168	29432	29432					0.13363168299474637
LIPFMSMLMAV	11	Unmodified	_LIPFMSMLMAV_					0	0	0		ENSG00000188991|ENST00000344941|SLC15A5	ENSG00000188991|ENST00000344941|SLC15A5	ENSG00000188991|ENST00000344941|SLC15A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.8751220703125	3	418.221591	1251.64294	0.079883	3.3409E-05	1.7057	0.00071335	1.7856	0.00074676	418.2224956647082	30.04	0.62305	30.04	29.686	30.309	0					34	21	2	0	0	0	0.329	1	5497	5497		4.7159	0	1	162480			23287	7791	13168	13169	29433	29433					0.02718857380909867
LIPLLELTV	9	Unmodified	_LIPLLELTV_					0	0	0			REV__ENSG00000198829|ENST00000362032|SUCNR1	REV__ENSG00000198829|ENST00000362032|SUCNR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.82806396484375	2	505.828443	1009.64233	-0.064749	-3.2752E-05	-1.4122	-0.00071432	-1.4769	-0.00074707	505.8276603051371	38.826	0.64328	38.826	38.546	39.189	0					55	22	4	0	0	0	0.20344	1	8171	8171		23.148	0	1	739660	+		23288	18870	13169	13170	29434	29434					0.13789845319365668
LIPTFPLN	8	Unmodified	_LIPTFPLN_					0	0	0			REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1	REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.3048400878906	2	457.770929	913.527304	0.041043	1.8788E-05	0.88013	0.0004029	0.92118	0.00042169	457.7709360344847	75.957	0.46777	76.01	75.782	76.25	0.053421					30	16	2	0	0	0	0.33245	1	19484	19484		19.439	1.304	1	268970	+		23289	13723	13170	13171	29435	29435					0.06708160908215177
LIPYFKQFR	9	Unmodified	_LIPYFKQFR_					0	0	0			REV__chr10:89462624-89506310|321|10.73|0.6|4.16|-|1|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|19	REV__chr10:89462624-89506310|321|10.73|0.6|4.16|-|1|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|19	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3690185546875	2	606.350409	1210.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.81	1	116.81	116.31	117.31	0								0	0	0	0.2672	1	30229	30229		0.52476	0	1		+		23290	13164	13171	13172	29436	29436					0.08934874536362258
LIQAKHLLL	9	Unmodified	_LIQAKHLLL_					0	0	0			REV__ENST00000489956.1_1_1:49226876-49242395:-|nuORF	REV__ENST00000489956.1_1_1:49226876-49242395:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.274658203125	2	524.847502	1047.68045	0.38387	0.00020147	0.15558	8.1653E-05	0.53944	0.00028313	524.8474426546065	69.763	0.43542	69.763	69.537	69.972	0					24	15	2	0	0	0	0.24311	1	17653	17653		16.942	6.1184	1	127170	+		23291	16973	13172	13173	29437	29437					0.15851776024715036
LIQAKHLLL	9	Unmodified	_LIQAKHLLL_					0	0	0			REV__ENST00000489956.1_1_1:49226876-49242395:-|nuORF	REV__ENST00000489956.1_1_1:49226876-49242395:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2745361328125	2	524.847502	1047.68045	0.33321	0.00017488	0.071052	3.7292E-05	0.40426	0.00021217	524.8474883762741	69.714	0.44196	69.78	69.579	70.021	0.066048					25	15	2	0	0	0	0.24311	1	17629	17629		11.64	3.7301	1	167910	+		23292	16973	13172	13173	29438	29438					0.15851776024715036
LIQAKHLLL	9	Unmodified	_LIQAKHLLL_					0	0	0			REV__ENST00000489956.1_1_1:49226876-49242395:-|nuORF	REV__ENST00000489956.1_1_1:49226876-49242395:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.274658203125	2	524.847502	1047.68045	0.4417	0.00023182	0.042147	2.212E-05	0.48384	0.00025394	525.3489959344231	69.762	0.34442	69.74	69.621	69.965	-0.022087					23	12	2	0	0	0	0.24311	1	17651	17651		11.64	3.7301	1	157350	+		23293	16973	13172	13173	29439	29439					0.15851776024715036
LIQNFGTI	8	Unmodified	_LIQNFGTI_					0	0	0			REV__nc|ENSG00000278259|Q96H55-4|MYO19	REV__nc|ENSG00000278259|Q96H55-4|MYO19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.7659606933594	2	453.258185	904.501818	-0.20083	-9.1028E-05	0.45601	0.00020669	0.25518	0.00011566	453.2583989650242	39.232	0.58114	39.232	38.958	39.54	0					29	20	2	0	0	0	0.31375	1	8245	8245		13.508	0	1	128030	+		23294	19347	13173	13174	29440	29440					0.045746863858198594
LIQPLFMF	8	Unmodified	_LIQPLFMF_					0	0	0		nc|ENSG00000004809|Q86VW1-3|SLC22A16;nc|ENSG00000004809|Q86VW1-2|SLC22A16;ENSG00000004809|ENST00000368919|SLC22A16	nc|ENSG00000004809|Q86VW1-3|SLC22A16	nc|ENSG00000004809|Q86VW1-3|SLC22A16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.8446044921875	2	504.782982	1007.55141	0.28119	0.00014194	3.1079	0.0015688	3.3891	0.0017108	504.7843362060714	74.495	0.096458	74.547	74.488	74.585	0.052368					4	2	2	0	0	0	0.32778	1	19083	19083		20.871	8.3397	1	108410			23295	315	13174	13175	29441	29441					0.047936780702571014
LIQVNTLPTPV	11	Unmodified	_LIQVNTLPTPV_					0	0	0			REV__nc|ENSG00000130475|O14526-3|FCHO1	REV__nc|ENSG00000130475|O14526-3|FCHO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8567504882812	2	597.858264	1193.70197	0.11007	6.5809E-05	-2.3905	-0.0014292	-2.2804	-0.0013633	597.8565374592073	98.381	0.10905	98.381	98.325	98.434	0					18	11	2	0	0	0	0.37965	1	26328	26328		13.906	0.86358	1	82630	+		23296	15457	13175	13176	29442	29442					0.11287116262747077
LIQVNTLPTPV	11	Unmodified	_LIQVNTLPTPV_					0	0	0			REV__nc|ENSG00000130475|O14526-3|FCHO1	REV__nc|ENSG00000130475|O14526-3|FCHO1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8564453125	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.399	1	98.392	97.892	98.892	-0.0068283								0	0	0	0.32418	1	26363	26363		13.906	3.8321	1		+		23297	15457	13175	13176	29443	29443					0.11287116262747077
LIQVNTLPTPV	11	Unmodified	_LIQVNTLPTPV_					0	0	0			REV__nc|ENSG00000130475|O14526-3|FCHO1	REV__nc|ENSG00000130475|O14526-3|FCHO1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	597.858264	1193.70197	0.11007	6.5809E-05	-2.3905	-0.0014292	-2.2804	-0.0013633	597.8565374592073	98.381	0.10905	98.381	98.325	98.434	0	0	0	NaN	13.906	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82630	+		23298	15457	13175	13176							0.11287116262747077
LIRAAWAPLE	10	Unmodified	_LIRAAWAPLE_					0	0	0			REV__nc|ENSG00000155066|Q8N271-3|PROM2	REV__nc|ENSG00000155066|Q8N271-3|PROM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.780029296875	2	570.332216	1138.64988	0.21495	0.00012259	-3.2062	-0.0018286	-2.9913	-0.001706	570.3306873643952	73.604	0.34487	73.573	73.397	73.742	-0.030655					18	12	2	0	0	0	0.3156	1	18849	18849		10.824	0	1	84842	+		23299	16688	13176	13177	29444	29444					0.08609997639632638
LIRGRIFFKIW	11	Unmodified	_LIRGRIFFKIW_					0	0	0		ENSG00000148950|ENST00000532287|IMMP1L	ENSG00000148950|ENST00000532287|IMMP1L	ENSG00000148950|ENST00000532287|IMMP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.6344299316406	3	483.63448	1447.88161	0.1971	9.5324E-05	0.16013	7.7446E-05	0.35723	0.00017277	483.6344700782725	91.794	0.57765	91.794	91.32	91.898	0					133	42	4	0	0	0	0.48486	2	24374	24374;24415		0.094841	0	1	1415000			23300	4838	13177	13178	29445;29446	29445					0.17558465061210882
LIRGRIFFKIW	11	Unmodified	_LIRGRIFFKIW_					0	0	0		ENSG00000148950|ENST00000532287|IMMP1L	ENSG00000148950|ENST00000532287|IMMP1L	ENSG00000148950|ENST00000532287|IMMP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.63458251953125	3	483.63448	1447.88161	0.17436	8.4325E-05	0.20242	9.7896E-05	0.37678	0.00018222	483.6344917018323	92.067	0.46542	92.067	91.866	92.331	0					118	30	5	0	0	0	0.48486	1	24463	24463		0.094841	0	1	2366200			23301	4838	13177	13178	29447	29447					0.17558465061210882
LIRGRIFFKIW	11	Unmodified	_LIRGRIFFKIW_					0	0	0		ENSG00000148950|ENST00000532287|IMMP1L	ENSG00000148950|ENST00000532287|IMMP1L	ENSG00000148950|ENST00000532287|IMMP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.63458251953125	3	483.63448	1447.88161	0.23451	0.00011342	0.17681	8.551E-05	0.41131	0.00019893	483.6345207549693	91.961	0.60125	92.051	91.736	92.337	0.090675					67	38	2	0	0	0	0.48486	3	24356	24356;24398;24438		0.094841	0	1	4233200			23302	4838	13177	13178	29448;29449;29450	29448					0.17558465061210882
LIRGRIFFKIW	11	Unmodified	_LIRGRIFFKIW_					0	0	0		ENSG00000148950|ENST00000532287|IMMP1L	ENSG00000148950|ENST00000532287|IMMP1L	ENSG00000148950|ENST00000532287|IMMP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.6346740722656	3	483.63448	1447.88161	0.43728	0.00021149	0.058088	2.8093E-05	0.49537	0.00023958	483.6344437540526	92.315	2.869	92.315	91.205	94.074	0.00046539					775	215	5	0	0	0	0.48486	3	24382	24382;24424;24466		0.094841	0	1	3596900			23303	4838	13177	13178	29451;29452;29453	29451					0.17558465061210882
LIRGRIFFKIW	11	Unmodified	_LIRGRIFFKIW_					0	0	0		ENSG00000148950|ENST00000532287|IMMP1L	ENSG00000148950|ENST00000532287|IMMP1L	ENSG00000148950|ENST00000532287|IMMP1L	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	483.63448	1447.88161	0.2489	0.00012038	0.082956	4.012E-05	0.33186	0.0001605	483.634447471387	91.584	0.43241	91.675	91.303	91.736	0.090668	-0.059803	-4.7688E-05	NaN	0.094841	66	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1930800			23304	4838	13177	13178							0.17558465061210882
LIRHKLKE	8	Unmodified	_LIRHKLKE_					0	0	0		ENSG00000127993|ENST00000265732|RBM48;nc|ENSG00000127993|Q5RL73-2|RBM48	ENSG00000127993|ENST00000265732|RBM48	ENSG00000127993|ENST00000265732|RBM48	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2771606445312	2	518.834926	1035.6553	0.42201	0.00021895	-0.40263	-0.0002089	0.019382	1.0056E-05	518.8347328716684	40.767	0.59559	40.767	40.473	41.069	0					40	21	3	0	0	0	0.34131	1	8681	8681		12.532	0	1	374460			23305	3344	13178	13179	29454	29454					0.13889721222130902
LIRHTVNK	8	Unmodified	_LIRHTVNK_					0	0	0		ENST00000576840.5_1_17:7130280-7131353:-|nuORF;ENSG00000004975|ENST00000005340|DVL2	ENST00000576840.5_1_17:7130280-7131353:-|nuORF	ENST00000576840.5_1_17:7130280-7131353:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.803466796875	2	490.803626	979.592698	0.1893	9.2911E-05	-0.48973	-0.00024036	-0.30043	-0.00014745	490.80329802930356	22.718	0.87036	22.673	22.379	23.249	-0.044867					69	30	3	0	0	0	0.33993	1	3237	3237		16.942	2.104	1	318320			23306	321	13179	13180	29455	29455					0.10208575153944821
LIRKCMLL	8	Unmodified	_LIRKCMLL_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.3043518066406	2	495.303558	988.592564	0.60344	0.00029889	0.97519	0.00048302	1.5786	0.0007819	495.30396605621183	79.167	0.77517	79.138	78.845	79.62	-0.028931					54	32	2	0	0	0	0.38703	1	20476	20476		20.871	0	1	354820			23307	1565	13180	13181	29456	29456					0.09781115838086407
LIRKCMLL	8	Unmodified	_LIRKCMLL_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	495.303558	988.592564	0.58653	0.00029051	0.74544	0.00036922	1.332	0.00065973	495.30417800995707	79.091	0.73151	79.091	78.906	79.638	0	-0.0094547	-0.00016069	NaN	20.871	64	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349650			23308	1565	13180	13181							0.09781115838086407
LIRKCMLL	8	Unmodified	_LIRKCMLL_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	495.303558	988.592564	0.56341	0.00027906	0.83873	0.00041543	1.4021	0.00069448	495.3041774243366	79.015	0.74839	79.073	78.867	79.615	0.058342	-0.027755	-6.8279E-05	NaN	20.871	79	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260210			23309	1565	13180	13181							0.09781115838086407
LIRKLELESLF	11	Unmodified	_LIRKLELESLF_					0	0	0			REV__FAM83G|p.F659Rfs*53|1|0.42|ENSG00000188522|chr17:18977692-18977693|-/GTCCCTC|frameshift_variant	REV__FAM83G|p.F659Rfs*53|1|0.42|ENSG00000188522|chr17:18977692-18977693|-/GTCCCTC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.58953857421875	3	454.278139	1359.81259	0.41435	0.00018823	0.58723	0.00026676	1.0016	0.00045499	454.2783363465536	47.407	0.58389	47.407	47.187	47.771	0					37	20	2	0	0	0	0.33287	1	10717	10717		2.8433	0.93691	1	205410	+		23310	18555	13181	13182	29457	29457					0.14707336250967273
LIRKLELESLF	11	Unmodified	_LIRKLELESLF_					0	0	0			REV__FAM83G|p.F659Rfs*53|1|0.42|ENSG00000188522|chr17:18977692-18977693|-/GTCCCTC|frameshift_variant	REV__FAM83G|p.F659Rfs*53|1|0.42|ENSG00000188522|chr17:18977692-18977693|-/GTCCCTC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.58929443359375	3	454.278139	1359.81259	0.21719	9.8663E-05	1.006	0.00045699	1.2232	0.00055565	454.6129005698942	47.291	0.68946	47.344	47.038	47.727	0.052574					32	25	2	0	0	0	0.33287	1	10672	10672		2.8433	2.2165	1	229120	+		23311	18555	13181	13182	29458	29458					0.14707336250967273
LIRLVPADL	9	Unmodified	_LIRLVPADL_					0	0	0			REV__ENST00000318037.3_1_3:196230147-196230231:-|nuORF	REV__ENST00000318037.3_1_3:196230147-196230231:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.8055114746094	2	505.32386	1008.63317	-0.019808	-1.0009E-05	0.025264	1.2767E-05	0.0054566	2.7574E-06	505.3237476919217	65.159	0.47572	65.148	64.947	65.422	-0.011337					28	17	2	0	0	0	0.25066	1	16181	16181		7.2892	1.0834	1	243580	+		23312	19947	13182	13183	29459	29459					0.12919496753693238
LIRMVREEE	9	Unmodified	_LIRMVREEE_					0	0	0		ENSG00000174460|ENST00000310164|ZCCHC12	ENSG00000174460|ENST00000310164|ZCCHC12	ENSG00000174460|ENST00000310164|ZCCHC12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.8163452148438	2	587.816073	1173.61759	0.33019	0.00019409	-0.021802	-1.2816E-05	0.30838	0.00018127	587.8163448459719	91.073	0.40565	91.163	91.017	91.422	0.090675					43	28	2	0	0	0	0.33276	1	24202	24202		3.9444	0.94915	1	538630			23313	6796	13183	13184	29460	29460					0.037728421743622675
LIRPVSASF	9	Unmodified	_LIRPVSASF_					0	0	0		ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.29388427734375	2	495.292559	988.570566	0.71657	0.00035491	0.24084	0.00011928	0.9574	0.00047419	495.2931562440298	47.175	0.58812	47.175	46.961	47.549	0					39	20	3	0	0	0	0.0042138	1	10702	10702		92.653	31.296	1	535310			23314	5390	13184	13185	29461	29461					0.07582350685515848
LIRPVSASF	9	Unmodified	_LIRPVSASF_					0	0	0		ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.283203125	2	495.292559	988.570566	1.0141	0.00050226	0.595	0.0002947	1.6091	0.00079696	495.29321584972405	47.142	0.40582	47.197	47.006	47.412	0.054371					35	14	3	0	0	0	0.16283	1	10680	10680		29.082	0	1	585740			23315	5390	13184	13185	29462	29462					0.07582350685515848
LIRPVSASF	9	Unmodified	_LIRPVSASF_					0	0	0		ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	495.292559	988.570566	0.37094	0.00018372	2.0768	0.0010286	2.4477	0.0012123	495.2936316693923	47.086	0.53097	47.139	46.984	47.515	0.052574	-0.03139	0.00097004	NaN	92.653	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467570			23316	5390	13184	13185							0.07582350685515848
LIRQDQVLT	9	Unmodified	_LIRQDQVLT_					0	0	0			REV__nc|ENSG00000121417|Q13398-6|ZNF211	REV__nc|ENSG00000121417|Q13398-6|ZNF211	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.27978515625	2	543.319306	1084.62406	0.58982	0.00032046	2.7078	0.0014712	3.2976	0.0017917	543.3212055977668	68.046	0.25909	68.03	67.838	68.098	-0.016296					13	8	2	0	0	0	0.23749	1	17082	17082		20.415	8.1739	1	133400	+		23317	15120	13185	13186	29463	29463					0.08513103397376653
LIRQPFESWE	10	Unmodified	_LIRQPFESWE_					0	0	0			REV__ENST00000429422.5_2_3:47892327-47892435:-|nuORF	REV__ENST00000429422.5_2_3:47892327-47892435:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.94854736328125	3	435.559305	1303.65609	-0.15772	-6.8695E-05	0.030365	1.3226E-05	-0.12735	-5.5469E-05	435.89367848523773	97.256	0.17115	97.327	97.26	97.431	0.070465					21	16	2	0	0	0	0.32137	1	26010	26010		1.7423	0.28716	1	81398	+		23318	20931	13186	13187	29464	29464					0.016404710805318246
LIRQPFESWE	10	Unmodified	_LIRQPFESWE_					0	0	0			REV__ENST00000429422.5_2_3:47892327-47892435:-|nuORF	REV__ENST00000429422.5_2_3:47892327-47892435:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.9486083984375	3	435.559305	1303.65609	-0.034718	-1.5122E-05	-0.076396	-3.3275E-05	-0.11111	-4.8397E-05	435.5591368030395	97.301	0.278	97.296	97.136	97.414	-0.0055466					31	25	2	0	0	0	0.32068	1	26074	26074		1.7423	0	1	50321	+		23319	20931	13186	13187	29465	29465					0.016404710805318246
LIRTYYSVN	9	Unmodified	_LIRTYYSVN_					0	0	0			REV__nc|ENSG00000095303|P23219-4|PTGS1	REV__nc|ENSG00000095303|P23219-4|PTGS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.3241577148438	2	564.806031	1127.59751	0.63474	0.00035851	3.0656	0.0017315	3.7003	0.00209	564.8077216913986	54.98	0.45222	54.964	54.655	55.107	-0.015923					32	16	3	0	0	0	0.1854	1	13068	13068		13.906	0	1	475680	+		23320	14097	13187	13188	29466	29466					0.038814145060541705
LIRYIQYLF	9	Unmodified	_LIRYIQYLF_					0	0	0			REV__ENST00000552283.5_1_12:102468021-102468123:-|nuORF	REV__ENST00000552283.5_1_12:102468021-102468123:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.90460205078125	3	410.241137	1227.70158	0.20904	8.5757E-05	-2.5861	-0.0010609	-2.377	-0.00097515	410.57432014012994	37.147	0.6572	37.234	36.841	37.498	0.08741					80	23	5	0	0	0	0.259	1	7618	7618		1.0715	0	1	190210	+		23321	22216	13188	13189	29467	29467					0.0968374133353791
LISAIIKFI	9	Unmodified	_LISAIIKFI_					0	0	0			REV__ENSG00000167306|ENST00000285039|MYO5B	REV__ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3389892578125	2	509.338978	1016.6634	0.31531	0.0001606	-0.040212	-2.0482E-05	0.27509	0.00014012	509.3390696123774	67.544	3.9644	67.544	67.193	71.157	0					340	143	5	0	0	0	0.11461	2	17217	17217;17268		36.127	3.3413	1	17206000	+		23322	17375	13189	13190	29468;29469	29468					0.1557385541889289
LISCVLSTQM	10	Unmodified	_LISCVLSTQM_					0	0	0			REV__ENST00000328945.6_1_16:82033617-82033689:-|nuORF	REV__ENST00000328945.6_1_16:82033617-82033689:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.364990234375	2	547.782853	1093.55115	0.47865	0.0002622	-1.4847	-0.00081328	-1.006	-0.00055108	548.2822474840362	33.466	0.14475	33.466	33.393	33.538	0					6	4	2	0	0	0	0.31847	1	6500	6500		6.7232	0	1	97174	+		23323	20022	13190	13191	29470	29470					0.008118902880823953
LISGKRTTIT	10	Unmodified	_LISGKRTTIT_					0	0	0			REV__ENST00000237937.7_1_9:74969735-74969897:-|nuORF	REV__ENST00000237937.7_1_9:74969735-74969897:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.6609497070312	2	545.334956	1088.65536	0.10989	5.9929E-05	0.2111	0.00011512	0.32099	0.00017505	545.3347297740145	98.231	1.1824	98.231	97.794	98.976	0					245	137	3	0	0	0	0.32054	1	26341	26341		3.2813	3.2813	1	514710	+		23324	19484	13191	13192	29471	29471					0.11457676431450636
LISLPRQRT	9	Unmodified	_LISLPRQRT_					0	0	0		nc|ENSG00000162670|Q76B58-2|BRINP3;ENSG00000162670|ENST00000367462|BRINP3	nc|ENSG00000162670|Q76B58-2|BRINP3	nc|ENSG00000162670|Q76B58-2|BRINP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3341674804688	2	542.33529	1082.65603	-0.065271	-3.5399E-05	-0.94348	-0.00051168	-1.0088	-0.00054708	542.3347063391462	34.562	0.66674	34.64	34.308	34.975	0.077381					61	23	4	0	0	0	0.29638	1	6866	6866		9.3831	0.63772	1	500990			23325	5598	13192	13193	29472	29472					0.1180051587118669
LISNNYIF	8	Unmodified	_LISNNYIF_					0	0	0			REV__ENSG00000073756|ENST00000367468|PTGS2	REV__ENSG00000073756|ENST00000367468|PTGS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.82635498046875	2	492.263468	982.512382	0.34589	0.00017027	-2.4678	-0.0012148	-2.1219	-0.0010445	492.2621537160381	62.676	1.3588	62.773	61.817	63.175	0.096985					63	49	2	0	0	0	0.3366	1	15182	15182		18.135	1.1927	1	229130	+		23326	13781	13193	13194	29473	29473					0.020426690402246095
LISRILSKKVF	11	Unmodified	_LISRILSKKVF_					0	0	0		ENST00000321037.4_1_6:46107450-46107498:+|nuORF	ENST00000321037.4_1_6:46107450-46107498:+|nuORF	ENST00000321037.4_1_6:46107450-46107498:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.2944641113281	3	435.286857	1302.83874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.854	1	60.854	60.354	61.354	0								0	0	0	0.33182	1	14910	14910		12.228	1.3286	1				23327	9380	13194	13195	29474	29474					0.19943650213099318
LISVFFLTF	9	Unmodified	_LISVFFLTF_					0	0	0		ENST00000397292.7_1_9:26905434-26905479:-|nuORF	ENST00000397292.7_1_9:26905434-26905479:-|nuORF	ENST00000397292.7_1_9:26905434-26905479:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2501220703125	2	543.815336	1085.61612	0.3849	0.00020932	2.5789	0.0014024	2.9638	0.0016117	543.8166688212796	26.073	0.44004	26.034	25.902	26.342	-0.038671					25	15	2	0	0	0	0.26168	1	4291	4291		1.8442	0.19162	1	111070			23328	10136	13195	13196	29475	29475					0.07673576147885797
LISYYCWGCHL	11	Unmodified	_LISYYCWGCHL_					0	0	0		ENST00000334512.9_1_10:80828941-80878774:+|nuORF	ENST00000334512.9_1_10:80828941-80878774:+|nuORF	ENST00000334512.9_1_10:80828941-80878774:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.7662048339844	3	453.20711	1356.5995	0.051801	2.3477E-05	2.0206	0.00091573	2.0724	0.00093921	453.20816466980784	39.439	0.41198	39.531	39.251	39.662	0.09267					19	14	2	0	0	0	0.3322	1	8265	8265		2.6312	2.1253	1	112570			23329	9470	13196	13197	29476	29476					-0.06453616072008117
LISYYCWGCHL	11	Unmodified	_LISYYCWGCHL_					0	0	0		ENST00000334512.9_1_10:80828941-80878774:+|nuORF	ENST00000334512.9_1_10:80828941-80878774:+|nuORF	ENST00000334512.9_1_10:80828941-80878774:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	453.20711	1356.5995	0.19914	9.0253E-05	1.9268	0.00087325	2.126	0.00096351	453.54223160892536	39.375	0.30252	39.474	39.347	39.65	0.099407	-0.028438	-8.7577E-05	NaN	1.2148	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89317			23330	9470	13196	13197							-0.06453616072008117
LITFFKRTTT	10	Unmodified	_LITFFKRTTT_					0	0	0			REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.9084777832031	3	409.908046	1226.70231	0.11618	4.7624E-05	0.9272	0.00038007	1.0434	0.00042769	409.9083298812228	16.755	0.63303	16.693	16.468	17.101	-0.062534					56	22	3	0	0	0	0.4022	1	1483	1483		3.0723	0	1	60896	+		23331	15111	13197	13198	29477	29477					0.09802535982612426
LITFFKRTTT	10	Unmodified	_LITFFKRTTT_					0	0	0			REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	409.908046	1226.70231	-0.14925	-6.118E-05	1.1813	0.00048424	1.0321	0.00042306	409.90842430002226	16.58	0.43004	16.58	16.349	16.779	0	-0.056145	0.00010809	NaN	3.0723	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102450	+		23332	15111	13197	13198							0.09802535982612426
LITFKQVAA	9	Unmodified	_LITFKQVAA_					0	0	0			REV__nc|ENSG00000170185|Q8NB14-2|USP38	REV__nc|ENSG00000170185|Q8NB14-2|USP38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2872314453125	2	495.80276	989.590967	0.47431	0.00023516	-0.99213	-0.0004919	-0.51782	-0.00025674	495.80235336687696	59.129	0.30903	59.115	59.031	59.34	-0.014267					14	10	2	0	0	0	0.24913	1	14391	14391		7.9102	0	1	87240	+		23333	17563	13198	13199	29478	29478					0.09575521345323068
LITHGTLVI	9	Unmodified	_LITHGTLVI_					0	0	0		ENSG00000144857|ENST00000682979|BOC;nc|ENSG00000144857|Q9BWV1|BOC;ENST00000471963.6_1_3:112968649-112990141:+|nuORF	ENSG00000144857|ENST00000682979|BOC	ENSG00000144857|ENST00000682979|BOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.3023681640625	2	483.80276	965.590967	0.13748	6.6511E-05	-1.4673	-0.00070989	-1.3298	-0.00064338	483.8028147785775	64.865	1.0782	64.957	64.553	65.631	0.091934					119	39	4	0	0	0	0.26879	1	16085	16085		13.508	4.1604	1	2200100			23334	4619	13199	13200	29479	29479					0.10679521345332432
LITKEQNEFD	10	Unmodified	_LITKEQNEFD_					0	0	0			REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5	REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.9263610839844	3	412.875071	1235.60338	-0.05042	-2.0817E-05	4.436	0.0018315	4.3856	0.0018107	412.87669628894014	25.743	0.34109	25.704	25.442	25.783	-0.038671					17	11	2	0	0	0	0.32033	1	4082	4082		1.7423	0.41263	1	58462	+		23335	13161	13200	13201	29480	29480					-0.00499531772948103
LITRHRTTL	9	Unmodified	_LITRHRTTL_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|3.544250815784157|0.2927699401366612|3.6|541.0|16|1|sense	L1PA6_dup546|chr2:49227587-49231532:-|3.544250815784157|0.2927699401366612|3.6|541.0|16|1|sense	L1PA6_dup546|chr2:49227587-49231532:-|3.544250815784157|0.2927699401366612|3.6|541.0|16|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8408813476562	2	555.840739	1109.66693	0.52142	0.00028983	-0.61314	-0.00034081	-0.091714	-5.0979E-05	555.8402927164381	33.387	0.63192	33.453	33.182	33.814	0.06636					54	22	3	0	0	0	0.31763	1	6518	6518		6.2058	1.3088	1	684670			23336	12490	13201	13202	29481	29481					0.11647918245466826
LITRYFLD	8	Unmodified	_LITRYFLD_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3167724609375	2	520.792392	1039.57023	0.51551	0.00026848	-1.1669	-0.00060769	-0.65134	-0.00033921	520.7922553566973	59.31	0.48222	59.295	59.058	59.54	-0.014267					26	16	2	0	0	0	0.34131	1	14388	14388		12.532	0	1	174560			23337	2059	13202	13203	29482	29482					0.05202930965674568
LITSRTKLSS	10	Unmodified	_LITSRTKLSS_					0	0	0		nc|ENSG00000168631|Q3MIW9-2|MUCL3;nc|ENSG00000168631|Q3MIW9|MUCL3;ENSG00000168631|ENST00000462446|MUCL3	nc|ENSG00000168631|Q3MIW9-2|MUCL3	nc|ENSG00000168631|Q3MIW9-2|MUCL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3328247070312	2	553.332413	1104.65027	0.52184	0.00028875	-0.69182	-0.0003828	-0.16998	-9.4054E-05	553.3323658700565	86.742	1.1831	86.742	86.354	87.537	0					134	49	3	0	0	0	0.39009	2	22845	22845;22895		5.2969	5.2969	1	1268100			23338	6288	13203	13204	29483;29484	29483					0.10213372568841805
LITTLAQKN	9	Unmodified	_LITTLAQKN_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2909851074219	2	501.303124	1000.5917	0.57455	0.00028802	0.47358	0.00023741	1.0481	0.00052543	501.3033491415633	74.994	1.0794	74.962	74.557	75.637	-0.031487					55	39	2	0	0	0	0.26612	1	19123	19123		13.906	0.86358	1	164330			23339	7339	13204	13205	29485	29485					0.09142315994370165
LITWPQPFCR	10	Unmodified	_LITWPQPFCR_					0	0	0			REV__ENST00000591254.1_1_19:12841477-12841717:-|nuORF	REV__ENST00000591254.1_1_19:12841477-12841717:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5349426269531	3	420.890109	1259.6485	-0.33545	-0.00014119	-1.9773	-0.00083223	-2.3128	-0.00097342	421.2234854962787	28.085	0.90054	28.086	27.596	28.496	0.0004673					62	31	3	0	0	0	0.31691	1	4729	4729		5.4027	1.5568	1	235170	+		23340	22562	13205	13206	29486	29486					0.029060402792538298
LITYLGLYPHV	11	Unmodified	_LITYLGLYPHV_					0	0	0		nc|ENSG00000095596|O43174-2|CYP26A1;ENSG00000095596|ENST00000224356|CYP26A1	nc|ENSG00000095596|O43174-2|CYP26A1	nc|ENSG00000095596|O43174-2|CYP26A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8880920410156	3	430.24818	1287.72271	-0.33762	-0.00014526	-0.19278	-8.2944E-05	-0.5304	-0.0002282	430.24820682999757	30.026	1.2983	30.054	29.435	30.733	0.027157					98	44	3	0	0	0	0.33334	1	5545	5545		1.2148	0	1	407180			23341	1453	13206	13207	29487	29487					0.09035706642407604
LIVEGKPQI	9	Unmodified	_LIVEGKPQI_					0	0	0		nc|ENSG00000170017|Q13740-4|ALCAM;nc|ENSG00000170017|Q13740-2|ALCAM;ENSG00000170017|ENST00000306107|ALCAM	nc|ENSG00000170017|Q13740-4|ALCAM	nc|ENSG00000170017|Q13740-4|ALCAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.3238525390625	2	498.808042	995.601532	0.87186	0.00043489	-1.6309	-0.00081352	-0.75907	-0.00037863	498.80731900084334	56.743	0.54868	56.723	56.541	57.09	-0.019077					27	19	2	0	0	0	0.15219	1	13676	13676		30.637	0.41173	1	305430			23342	6416	13207	13208	29488	29488					0.1035550399976728
LIVGGQYID	9	Unmodified	_LIVGGQYID_					0	0	0			REV__ENST00000490872.1_1_2:219254703-219256473:+|nuORF	REV__ENST00000490872.1_1_2:219254703-219256473:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.8132629394531	2	489.26875	976.522947	0.27646	0.00013526	-0.23744	-0.00011617	0.039018	1.909E-05	489.2683876269184	47.247	0.48165	47.3	47.088	47.57	0.052574					29	17	2	0	0	0	0.23783	1	10745	10745		18.135	0	1	203890	+		23343	13454	13208	13209	29489	29489					0.033746516946507654
LIVGSYSAGF	10	Unmodified	_LIVGSYSAGF_					0	0	0		ENSG00000169327|ENST00000304418|OR5AU1;nc|ENSG00000169327|Q8NGC0|OR5AU1	ENSG00000169327|ENST00000304418|OR5AU1	ENSG00000169327|ENST00000304418|OR5AU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.81341552734375	2	507.26875	1012.52295	0.33149	0.00016816	-0.32385	-0.00016428	0.0076409	3.876E-06	507.26892553490075	58.24	0.75797	58.325	58.112	58.87	0.085621					40	26	2	0	0	0	0.29519	1	14079	14079		21.747	0	1	293440			23344	6349	13209	13210	29490	29490					0.017186516946594566
LIVLDWLF	8	Unmodified	_LIVLDWLF_					0	0	0		nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR	nc|ENSG00000105699|Q86X29-3|LSR	nc|ENSG00000105699|Q86X29-3|LSR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8133239746094	2	509.802229	1017.5899	0.5337	0.00027208	1.6715	0.00085215	2.2052	0.0011242	509.80295910707207	85.146	0.18809	85.146	85.04	85.228	0					9	6	2	0	0	0	0.34185	1	22355	22355		10.183	0	1	106510			23345	12636	13210	13211	29491	29491					0.08181306976416636
LIVSALITFFK	11	Unmodified	_LIVSALITFFK_					0	0	0			REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.38916015625	2	626.389199	1250.76385	-0.032207	-2.0174E-05	-1.0961	-0.00068658	-1.1283	-0.00070675	626.8890891225356	103.62	0.66187	103.62	103.51	104.17	0					151	92	2	0	0	0	0.44523	3	27608	27599;27608;27660		5.2969	2.0156	1	22132000	+		23346	15111	13211	13212	29492;29493;29494	29493					0.14849467681892747
LIVSALITFFK	11	Unmodified	_LIVSALITFFK_					0	0	0			REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.8883666992188	2	626.389199	1250.76385	-0.032207	-2.0174E-05	-1.0961	-0.00068658	-1.1283	-0.00070675	626.8890891225356	103.62	0.66187	103.62	103.51	104.17	0					151	92	2	0	0	0	0.3327	1	27599	27599		2.7352	0.23671	1	22132000	+		23347	15111	13211	13212	29495	29495					0.14849467681892747
LIVSALITFFK	11	Unmodified	_LIVSALITFFK_					0	0	0			REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.3878784179688	2	626.389199	1250.76385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.7	1	104.71	104.21	105.21	0.0018463								0	0	0	0.38114	1	27795	27795		1.3295	0.13619	1		+		23348	15111	13211	13212	29496	29496					0.14849467681892747
LIVSALITFFK	11	Unmodified	_LIVSALITFFK_					0	0	0			REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.8884887695312	2	626.389199	1250.76385	0.12648	7.9226E-05	-0.88626	-0.00055514	-0.75978	-0.00047592	626.3895401431339	103.17	0.72874	103.17	102.89	103.62	-0.0011139					171	104	2	0	0	0	0.46475	1	27548	27548		2.7352	1.2533	1	23725000	+		23349	15111	13211	13212	29497	29497					0.14849467681892747
LIVSALITFFK	11	Unmodified	_LIVSALITFFK_					0	0	0			REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.8948364257812	2	626.389199	1250.76385	0.12683	7.9445E-05	-2.067	-0.0012948	-1.9402	-0.0012153	626.8887272297998	103.77	0.97324	103.77	103.62	104.59	-0.0011063					208	133	2	0	0	0	0.46475	2	27564	27564;27626		2.7352	1.0826	1	19004000	+		23350	15111	13211	13212	29498;29499	29498					0.14849467681892747
LIVSALITFFK	11	Unmodified	_LIVSALITFFK_					0	0	0			REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.8948364257812	2	626.389199	1250.76385	0.12683	7.9445E-05	-2.067	-0.0012948	-1.9402	-0.0012153	626.8887272297998	103.77	0.97324	103.77	103.62	104.59	-0.0011063					208	133	2	0	0	0	0.3327	1	27564	27564		2.7352	1.0826	1	19004000	+		23351	15111	13211	13212	29500	29500					0.14849467681892747
LIVSALITFFK	11	Unmodified	_LIVSALITFFK_					0	0	0			REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	REV__ENST00000507477.1_1_17:47780142-47780651:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	626.389199	1250.76385	-0.197	-0.0001234	-0.075305	-4.717E-05	-0.2723	-0.00017057	626.3902200647791	103.6	0.73158	103.61	103.47	104.2	0.0082626	-0.058301	0.0017205	NaN	5.2969	136	101	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16168000	+		23352	15111	13211	13212							0.14849467681892747
LIVWGYEFVF	10	Unmodified	_LIVWGYEFVF_					0	0	0		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.8359375	2	636.8368	1271.65905	0.55601	0.00035409	-0.87737	-0.00055874	-0.32136	-0.00020465	636.8361497755325	19.445	0.395	19.389	19.2	19.595	-0.055693					29	13	3	0	0	0	0.41085	1	2266	2266		1.4819	0	1	45201			23353	6046	13212	13213	29501	29501					0.03408346205287671
LIWAPTPPF	9	Unmodified	_LIWAPTPPF_					0	0	0			REV__ENST00000339876.10_1_1:204987617-204987836:+|nuORF	REV__ENST00000339876.10_1_1:204987617-204987836:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.8292846679688	2	521.292028	1040.5695	0.44485	0.0002319	-0.65057	-0.00033913	-0.20571	-0.00010724	521.2916344291151	58.469	0.61384	58.561	58.314	58.928	0.091301					40	21	3	0	0	0	0.24739	1	14110	14110		13.508	0	1	296420	+		23354	20104	13213	13214	29502	29502					0.05084136316600052
LIWDKTEEND	10	Unmodified	_LIWDKTEEND_					0	0	0			REV__CALU|p.K251N|1|0.43|ENSG00000128595|chr7:128767565-128767565|G/T|missense_variant	REV__CALU|p.K251N|1|0.43|ENSG00000128595|chr7:128767565-128767565|G/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.53497314453125	3	421.534825	1261.58265	-0.28962	-0.00012208	0.49491	0.00020862	0.20529	8.6538E-05	421.53507035487826	27.63	1.0693	27.619	27.16	28.23	-0.01156					73	37	3	0	0	0	0.38027	1	4783	4783		7.1017	1.3183	1	651130	+		23355	13136	13214	13215	29503	29503					-0.03768122152609976
LIWGITTLAF	10	Unmodified	_LIWGITTLAF_					0	0	0			REV__ENSG00000234469|ENST00000445307|CLDN34	REV__ENSG00000234469|ENST00000445307|CLDN34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2796630859375	2	567.831517	1133.64848	-0.14799	-8.4036E-05	1.8205	0.0010337	1.6725	0.00094967	567.8325203351513	116.42	0.11472	116.42	116.37	116.49	0					22	14	2	0	0	0	0.3198	1	30145	30145		4.3292	0.38484	1	19753	+		23356	19143	13215	13216	29504	29504					0.08700363550883594
LIWIIGQK	8	Unmodified	_LIWIIGQK_					0	0	0		ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.800048828125	2	485.807845	969.601138	0.28109	0.00013656	1.2268	0.00059601	1.5079	0.00073256	485.80827310280665	63.252	0.76284	63.252	62.984	63.746	0					55	27	3	0	0	0	0.35375	1	15772	15772		24.674	0	1	712460			23357	680	13216	13217	29505	29505					0.11512129070570154
LIWKRCRKY	9	Unmodified	_LIWKRCRKY_					0	0	0			REV__ENST00000523988.5_1_13:45969527-45969839:-|nuORF	REV__ENST00000523988.5_1_13:45969527-45969839:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3692016601562	2	633.36861	1264.72267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.23	1	112.24	111.74	112.74	0.0131								0	0	0	0.2672	1	29214	29214		0.52476	0	1		+		23358	21935	13217	13218	29506	29506					0.1008942816142735
LIWSKYIAF	9	Unmodified	_LIWSKYIAF_					0	0	0		nc|ENSG00000151834|P47869-2|GABRA2	nc|ENSG00000151834|P47869-2|GABRA2	nc|ENSG00000151834|P47869-2|GABRA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8277587890625	2	570.826235	1139.63792	-0.19251	-0.00010989	0.31472	0.00017965	0.12222	6.9764E-05	570.827978468926	12.515	0.23811	12.447	12.281	12.519	-0.06806					21	7	4	0	0	0	0.33018	1	162	162		4.3292	0	1	59543			23359	12760	13218	13219	29507	29507					0.07368380896468807
LIWSRCWVATI	11	Unmodified	_LIWSRCWVATI_					0	0	0			REV__ENST00000474780.1_1_3:19987557-19988503:-|nuORF	REV__ENST00000474780.1_1_3:19987557-19988503:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.2735595703125	3	449.912914	1346.71691	-0.10915	-4.911E-05	1.4887	0.0006698	1.3796	0.00062069	449.9133573885692	39.616	0.59396	39.616	39.43	40.024	0					44	21	3	0	0	0	0.32909	1	8450	8450		10.899	2.9536	1	224010	+		23360	21398	13219	13220	29508	29508					0.05742284859093161
LIWSRCWVATI	11	Unmodified	_LIWSRCWVATI_					0	0	0			REV__ENST00000474780.1_1_3:19987557-19988503:-|nuORF	REV__ENST00000474780.1_1_3:19987557-19988503:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.27362060546875	3	449.912914	1346.71691	0.10458	4.7053E-05	0.59025	0.00026556	0.69483	0.00031262	449.91320913282436	39.47	0.49746	39.562	39.39	39.887	0.09267					38	17	3	0	0	0	0.3266	1	8411	8411		10.899	3.4219	1	304690	+		23361	21398	13219	13220	29509	29509					0.05742284859093161
LIWTKASGP	9	Unmodified	_LIWTKASGP_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7791748046875	2	486.779285	971.544017	0.26253	0.00012779	0.40051	0.00019496	0.66304	0.00032276	486.7792359851338	67.968	0.59654	67.968	67.706	68.303	0					49	21	4	0	0	0	0.14961	1	17121	17121		27.629	5.8822	1	481180			23362	2707	13220	13221	29510	29510					0.0571066179418267
LIYESGLRLAL	11	Unmodified	_LIYESGLRLAL_					0	0	0			REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.3726196289062	2	624.371538	1246.72852	0.31026	0.00019372	1.8807	0.0011743	2.191	0.001368	624.3722627516454	91.853	0.21204	91.853	91.673	91.885	0					23	13	2	0	0	0	0.46277	1	24385	24385		2.9952	1.3426	1	123290	+		23363	21092	13221	13222	29511	29511					0.11502805154077578
LIYESGLRLAL	11	Unmodified	_LIYESGLRLAL_					0	0	0			REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.3716430664062	2	624.371538	1246.72852	0.054964	3.4318E-05	2.3317	0.0014558	2.3867	0.0014902	624.3723778126758	91.658	0.20415	91.749	91.72	91.924	0.090668					19	12	2	0	0	0	0.44192	2	24332	24332;24344		5.7319	4.0792	1	115720	+		23364	21092	13221	13222	29512;29513	29512					0.11502805154077578
LIYESGLRLAL	11	Unmodified	_LIYESGLRLAL_					0	0	0			REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3720092773438	2	624.371538	1246.72852	0.33668	0.00021021	0.55337	0.00034551	0.89005	0.00055572	624.3717192117628	91.043	0.50052	91.044	90.847	91.347	0.00047302					65	34	2	0	0	0	0.46059	1	24143	24143		3.2813	0	1	2140600	+		23365	21092	13221	13222	29514	29514					0.11502805154077578
LIYESGLRLAL	11	Unmodified	_LIYESGLRLAL_					0	0	0			REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.7750244140625	2	624.371538	1246.72852	0.35777	0.00022338	1.0478	0.00065423	1.4056	0.00087761	624.3721592739081	91.801	0.31407	91.802	91.664	91.978	0.00046539					29	17	2	0	0	0	0.44192	3	24349	24349;24359;24380		5.7319	3.8876	1	226180	+		23366	21092	13221	13222	29515;29516;29517	29515					0.11502805154077578
LIYESGLRLAL	11	Unmodified	_LIYESGLRLAL_					0	0	0			REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.7750244140625	2	624.371538	1246.72852	0.35777	0.00022338	1.0478	0.00065423	1.4056	0.00087761	624.3721592739081	91.801	0.31407	91.802	91.664	91.978	0.00046539					29	17	2	0	0	0	0.33119	1	24349	24349		5.7319	1.4026	1	226180	+		23367	21092	13221	13222	29518	29518					0.11502805154077578
LIYESGLRLAL	11	Unmodified	_LIYESGLRLAL_					0	0	0			REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	624.371538	1246.72852	0.31026	0.00019372	1.8807	0.0011743	2.191	0.001368	624.3722627516454	91.853	0.21204	91.853	91.673	91.885	0	0.051665	0.00018773	NaN	5.7319	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123290	+		23368	21092	13221	13222							0.11502805154077578
LIYESGLRLAL	11	Unmodified	_LIYESGLRLAL_					0	0	0			REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	624.371538	1246.72852	0.054964	3.4318E-05	2.3317	0.0014558	2.3867	0.0014902	624.3723778126758	91.658	0.20415	91.749	91.72	91.924	0.090668	-0.052191	0.00075091	NaN	5.7319	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115720	+		23369	21092	13221	13222							0.11502805154077578
LIYHVKDMHF	10	Unmodified	_LIYHVKDMHF_					0	0	0			REV__ENSG00000157823|ENST00000336418|AP3S2	REV__ENSG00000157823|ENST00000336418|AP3S2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.23779296875	3	434.893631	1301.65906	-0.17955	-7.8083E-05	-0.35722	-0.00015535	-0.53676	-0.00023344	434.8932650260727	26.714	0.76412	26.714	26.271	27.035	0					39	26	3	0	0	0	0.31746	1	4466	4466		6.1918	3.4567	1	96603	+		23370	16795	13222	13223	29519	29519					0.020300229336953635
LIYIYGNLY	9	Unmodified	_LIYIYGNLY_					0	0	0			REV__ENSG00000165572|ENST00000379485|KBTBD6	REV__ENSG00000165572|ENST00000379485|KBTBD6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.3098754882812	2	566.307875	1130.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.683	1	15.618	15.118	16.118	-0.064413								0	0	0	0.26704	1	1099	1099		0.6015	0	1		+		23371	15092	13223	13224	29520	29520					0.04112084279904593
LIYLRQSV	8	Unmodified	_LIYLRQSV_					0	0	0			REV__ENST00000509573.5_1_5:138855949-138860944:-|nuORF	REV__ENST00000509573.5_1_5:138855949-138860944:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7481384277344	2	496.300384	990.586216	0.38256	0.00018987	0.55066	0.00027329	0.93322	0.00046316	496.3005495962665	67.399	0.51356	67.399	67.193	67.706	0					39	17	3	0	0	0	0.32435	1	16995	16995		16.942	3.4344	1	434930	+		23372	18324	13224	13225	29521	29521					0.09054637202564209
LIYTYIGTLLV	11	Unmodified	_LIYTYIGTLLV_					0	0	0		nc|ENSG00000174527|Q8N1T3|MYO1H;nc|ENSG00000174527|Q8N1T3-3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H	nc|ENSG00000174527|Q8N1T3|MYO1H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3779907226562	2	634.878665	1267.74278	0.47894	0.00030407	-0.29962	-0.00019022	0.17932	0.00011385	634.8781616598574	111.41	0.18597	111.42	111.31	111.49	0.01152					42	27	2	0	0	0	0.33324	1	29008	29008		1.1933	0	1	156930			23373	12844	13225	13226	29522	29522					0.11961457582378898
LIYVAGGLTK	10	Unmodified	_LIYVAGGLTK_					0	0	0		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2567138671875	2	517.815867	1033.61718	0.684	0.00035419	-0.30075	-0.00015573	0.38325	0.00019845	517.8157367658483	47.122	0.45034	47.122	46.961	47.411	0					27	15	2	0	0	0	0.21213	1	10668	10668		40.239	18.493	1	692860			23374	2583	13226	13227	29523	29523					0.10171790516778856
LIYVAGGLTK	10	Unmodified	_LIYVAGGLTK_					0	0	0		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.25634765625	2	517.815867	1033.61718	0.90991	0.00047117	-0.3116	-0.00016135	0.59831	0.00030982	517.8156570195998	47.073	0.56929	47.127	46.972	47.541	0.054371					32	20	2	0	0	0	0.2623	1	10622	10622		32.786	15.843	1	554600			23375	2583	13226	13227	29524	29524					0.10171790516778856
LIYYFIFLG	9	Unmodified	_LIYYFIFLG_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ENST00000522406.5_1_17:67144970-67178294:-|nuORF	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.2976684570312	2	574.823161	1147.63177	-0.10344	-5.9458E-05	-1.0377	-0.00059647	-1.1411	-0.00065592	574.8224912399144	13.614	0.38832	13.614	13.484	13.872	0					24	13	3	0	0	0	0.26117	1	491	491		2.3027	0	1	71541			23376	5117	13227	13228	29525	29525					0.06385862664933484
LKAAKHMAVL	10	Unmodified	_LKAAKHMAVL_					0	0	0			REV__ENST00000554757.1_1_14:104198706-104199352:+|nuORF	REV__ENST00000554757.1_1_14:104198706-104199352:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.834228515625	2	541.331162	1080.64777	0.51421	0.00027836	1.4683	0.00079484	1.9825	0.0010732	541.8338697346444	52.419	0.7833	52.419	52.123	52.906	0					48	27	2	0	0	0	0.36786	1	12288	12288		9.3831	0	1	1587200	+		23377	14225	13228	13229	29526	29526					0.11067245630192701
LKAAKHMAVL	10	Unmodified	_LKAAKHMAVL_					0	0	0			REV__ENST00000554757.1_1_14:104198706-104199352:+|nuORF	REV__ENST00000554757.1_1_14:104198706-104199352:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.8344116210938	2	541.331162	1080.64777	0.56522	0.00030597	1.5646	0.00084695	2.1298	0.0011529	541.8338429594562	52.385	0.82066	52.435	52.086	52.907	0.050575					49	29	2	0	0	0	0.38773	1	12258	12258		5.7319	0	1	1616500	+		23378	14225	13228	13229	29527	29527					0.11067245630192701
LKAAKHMAVL	10	Unmodified	_LKAAKHMAVL_					0	0	0			REV__ENST00000554757.1_1_14:104198706-104199352:+|nuORF	REV__ENST00000554757.1_1_14:104198706-104199352:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.834228515625	2	541.331162	1080.64777	0.45506	0.00024634	1.4529	0.00078652	1.908	0.0010329	541.8340045113777	52.519	0.957	52.518	52.169	53.126	-0.00081253					51	34	2	0	0	0	0.36786	1	12314	12314		9.3831	0	1	1432200	+		23379	14225	13228	13229	29528	29528					0.11067245630192701
LKAAKHMAVL	10	Unmodified	_LKAAKHMAVL_					0	0	0			REV__ENST00000554757.1_1_14:104198706-104199352:+|nuORF	REV__ENST00000554757.1_1_14:104198706-104199352:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.331162	1080.64777	0.51421	0.00027836	1.4683	0.00079484	1.9825	0.0010732	541.8338697346444	52.419	0.7833	52.419	52.123	52.906	0	-0.038735	-2.6409E-05	NaN	9.3831	48	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1587200	+		23380	14225	13228	13229							0.11067245630192701
LKAAKHMAVL	10	Unmodified	_LKAAKHMAVL_					0	0	0			REV__ENST00000554757.1_1_14:104198706-104199352:+|nuORF	REV__ENST00000554757.1_1_14:104198706-104199352:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.331162	1080.64777	0.45506	0.00024634	1.4529	0.00078652	1.908	0.0010329	541.8340045113777	52.519	0.957	52.518	52.169	53.126	-0.00081253	0.060675	-4.3058E-05	NaN	9.3831	51	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1432200	+		23381	14225	13228	13229							0.11067245630192701
LKAKTSLP	8	Unmodified	_LKAKTSLP_					0	0	0		nc|ENSG00000149476|Q3LXA3-2|TKFC;ENSG00000149476|ENST00000394900|TKFC;ENST00000530329.1_1_11:61112942-61113484:+|nuORF;ENST00000525366.5_1_11:61112846-61113972:+|nuORF	nc|ENSG00000149476|Q3LXA3-2|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.91046142578125	2	429.276378	856.538203	-0.33315	-0.00014302	0.76343	0.00032772	0.43027	0.00018471	429.27654155629676	31.151	0.40326	31.193	31.023	31.427	0.042086					30	14	3	0	0	0	0.34247	1	5850	5850		8.5933	0.68312	1	182370			23382	4868	13229	13230	29529	29529					0.1041956328251672
LKDPEELF	8	Unmodified	_LKDPEELF_					0	0	0			REV__ENSG00000152193|ENST00000282003|OBI1	REV__ENSG00000152193|ENST00000282003|OBI1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7500305175781	2	495.760758	989.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.525	1	69.591	69.091	70.091	0.066048								0	0	0	0.35843	1	17568	17568		10.824	1.4408	1		+		23383	16567	13230	13231	29530	29530					0.011789454577751712
LKDPGCFPL	9	Unmodified	_LKDPGCFPL_					0	0	0			REV__ENSG00000171014|ENST00000307033|OR4D5	REV__ENSG00000171014|ENST00000307033|OR4D5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7498779296875	2	495.259871	988.505189	0.32953	0.0001632	-0.066516	-3.2943E-05	0.26301	0.00013026	495.25964969660964	69.987	0.89354	69.965	69.462	70.356	-0.022087					96	32	5	0	0	0	0.26612	1	17579	17579		13.906	0.39817	1	317960	+		23384	17614	13231	13232	29531	29531					0.010476131681571133
LKDRRLSG	8	Unmodified	_LKDRRLSG_					0	0	0		ENSG00000103034|ENST00000570248|NDRG4	ENSG00000103034|ENST00000570248|NDRG4	ENSG00000103034|ENST00000570248|NDRG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7857666015625	2	472.785433	943.556313	-0.17508	-8.2777E-05	0.3903	0.00018453	0.21522	0.00010175	472.7856150145079	75.947	0.5504	75.947	75.618	76.168	0					27	19	2	0	0	0	0.46022	1	19559	19559		2.3027	2.3027	1	119430			23385	1800	13232	13233	29532	29532					0.0822769825724663
LKDYSMHLM	9	Unmodified	_LKDYSMHLM_					0	0	0		ENST00000492394.5_1_3:125007068-125032195:-|nuORF	ENST00000492394.5_1_3:125007068-125032195:-|nuORF	ENST00000492394.5_1_3:125007068-125032195:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.2752685546875	2	569.275195	1136.53584	0.15971	9.0922E-05	-0.55228	-0.0003144	-0.39256	-0.00022348	569.2755861691268	30.923	1.3076	30.923	30.674	31.982	0					200	46	7	0	0	0	0.11461	2	5798	5798;5840		36.127	4.8587	1	19575000			23386	11191	13233	13234	29533;29534	29533					-0.026969765091052977
LKEAKRFMK	9	Unmodified	_LKEAKRFMK_					0	0	0		ENST00000445692.5_1_2:68762461-68805151:+|nuORF;ENST00000529851.5_1_2:68740776-68805151:+|nuORF;ENSG00000169621|ENST00000303795|APLF	ENST00000445692.5_1_2:68762461-68805151:+|nuORF	ENST00000445692.5_1_2:68762461-68805151:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8421020507812	2	575.841894	1149.66923	0.21142	0.00012175	1.1115	0.00064003	1.3229	0.00076178	575.8423428114145	80.387	2.5277	80.387	78.95	81.478	0					278	106	3	0	0	0	0.31038	1	21020	21020		7.2892	0	1	5564600			23387	6371	13234	13235	29535	29535					0.10038630658914371
LKEALGSAWA	10	Unmodified	_LKEALGSAWA_					0	0	0		ENST00000459805.5_1_1:155184084-155184162:-|nuORF	ENST00000459805.5_1_1:155184084-155184162:-|nuORF	ENST00000459805.5_1_1:155184084-155184162:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.80322265625	2	523.287474	1044.5604	0.31571	0.00016521	0.4696	0.00024574	0.78532	0.00041095	523.7899668768483	24.929	0.99189	24.873	24.6	25.592	-0.055931					59	34	3	0	0	0	0.3258	2	4033	3981;4033		17.113	0	1	120950			23388	10717	13235	13236	29536;29537	29537					0.039897429602888224
LKEALGSAWA	10	Unmodified	_LKEALGSAWA_					0	0	0		ENST00000459805.5_1_1:155184084-155184162:-|nuORF	ENST00000459805.5_1_1:155184084-155184162:-|nuORF	ENST00000459805.5_1_1:155184084-155184162:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	523.287474	1044.5604	0.11861	6.2067E-05	-0.034844	-1.8234E-05	0.083766	4.3834E-05	523.7899303609147	24.865	1.1684	24.833	24.545	25.713	-0.031408	-0.019978	-0.00020629	NaN	17.113	73	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151030			23389	10717	13235	13236							0.039897429602888224
LKECLKKQ	8	Unmodified	_LKECLKKQ_					0	0	0		nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4;LARP4|p.N349Mfs*16|1|0.11|ENSG00000161813|chr12:50454341-50454341|A/-|frameshift_variant	nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.95916748046875	2	495.294245	988.573937	0.25066	0.00012415	3.1795	0.0015748	3.4302	0.001699	495.2957291043284	94.432	0.26191	94.432	94.323	94.584	0					30	23	2	0	0	0	0.34272	1	25229	25229		7.9102	0	1	43848			23390	5531	13236	13237	29538	29538					0.0791927746786314
LKECLKKQ	8	Unmodified	_LKECLKKQ_					0	0	0		nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-7|LARP4;LARP4|p.N349Mfs*16|1|0.11|ENSG00000161813|chr12:50454341-50454341|A/-|frameshift_variant	nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.959228515625	2	495.294245	988.573937	0.20597	0.00010202	1.84	0.00091136	2.046	0.0010134	495.2942845592627	95.321	0.1003	95.321	95.267	95.368	0					15	10	2	0	0	0	0.34272	1	25448	25448		7.9102	3.5809	1	46234			23391	5531	13236	13237	29539	29539					0.0791927746786314
LKEDYQKKL	9	Unmodified	_LKEDYQKKL_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.8480834960938	2	582.834788	1163.65502	0.50804	0.0002961	0.089113	5.1938E-05	0.59715	0.00034804	582.8350840023825	33.67	0.24336	33.67	33.564	33.808	0					12	8	2	0	0	0	0.28674	1	6582	6582		10.824	10.824	1	59988	+		23392	18293	13237	13238	29540	29540					0.07974256711622729
LKEETRKK	8	Unmodified	_LKEETRKK_					0	0	0		ENSG00000172031|ENST00000370383|EPHX4	ENSG00000172031|ENST00000370383|EPHX4	ENSG00000172031|ENST00000370383|EPHX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.3141479492188	2	516.314023	1030.61349	0.46504	0.00024011	-0.080923	-4.1782E-05	0.38412	0.00019833	516.314063938278	88.922	2.1153	88.922	88.403	90.518	0					346	134	7	0	0	0	0.46022	1	23740	23740		2.3027	0	1	6571200			23393	6598	13238	13239	29541	29541					0.09941120742928433
LKEGPALDR	9	Unmodified	_LKEGPALDR_					0	0	0			REV__ENST00000263904.4_1_2:153032177-153032426:-|nuORF	REV__ENST00000263904.4_1_2:153032177-153032426:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.26922607421875	2	499.785099	997.555644	0.033229	1.6607E-05	-0.36329	-0.00018157	-0.33006	-0.00016496	499.7847989535337	14.826	0.25176	14.761	14.646	14.898	-0.064414					11	8	2	0	0	0	0.26068	1	813	813		3.2813	0.54611	1	30338	+		23394	19627	13239	13240	29542	29542					0.05676858817514585
LKEGPLKNIDL	11	Unmodified	_LKEGPLKNIDL_					0	0	0			REV__ENSG00000141867|ENST00000679869|BRD4	REV__ENSG00000141867|ENST00000679869|BRD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.371337890625	2	620.368995	1238.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.687	1	99.687	99.187	100.19	0								0	0	0	0.36517	1	26662	26662		4.897	0	1		+		23395	16094	13240	13241	29543	29543					0.11362501291455374
LKEIGSGWR	9	Unmodified	_LKEIGSGWR_					0	0	0		ENST00000540887.1_1_11:63971152-63971275:+|nuORF	ENST00000540887.1_1_11:63971152-63971275:+|nuORF	ENST00000540887.1_1_11:63971152-63971275:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3038940429688	2	523.293091	1044.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.672	1	90.763	90.263	91.263	0.090668								0	0	0	0.2489	1	24034	24034		6.7232	0	1				23396	11728	13241	13242	29544	29544					0.05112565054423612
LKEIKGHTKNK	11	Unmodified	_LKEIKGHTKNK_					0	0	0			REV__CON__REFSEQ:XP_001252647	REV__CON__REFSEQ:XP_001252647	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	648.3932495117188	2	648.393336	1294.77212	0.069693	4.5189E-05	-0.026305	-1.7056E-05	0.043388	2.8132E-05	648.3933653466829	98.863	1.1234	98.863	98.462	99.586	0					315	135	4	0	0	0	0.47633	1	26382	26382		1.1933	0	1	483420	+	+	23397	13280	13242	13243	29545	29545					0.13652414651210165
LKEIKGHTKNK	11	Unmodified	_LKEIKGHTKNK_					0	0	0			REV__CON__REFSEQ:XP_001252647	REV__CON__REFSEQ:XP_001252647	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	648.3938598632812	2	648.393336	1294.77212	0.27536	0.00017854	-0.055413	-3.5929E-05	0.21994	0.00014261	648.3933877596284	98.849	0.99235	98.842	98.505	99.497	-0.006897					264	122	4	0	0	0	0.47633	1	26439	26439		1.1933	0	1	690830	+	+	23398	13280	13242	13243	29546	29546					0.13652414651210165
LKEIRRSP	8	Unmodified	_LKEIRRSP_					0	0	0		ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.3131103515625	2	499.808908	997.603263	0.29826	0.00014907	3.0372	0.001518	3.3355	0.0016671	499.80878929365474	30.864	0.86881	30.864	30.525	31.394	0					62	30	3	0	0	0	0.4419	1	5685	5685		8.5933	0	1	215900			23399	2874	13243	13244	29547	29547					0.10436557808372982
LKEKEELQRKL	11	Unmodified	_LKEKEELQRKL_					0	0	0			REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	REV__nc|ENSG00000125844|Q9P2E9-3|RRBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.9519958496094	3	471.952314	1412.83511	0.0099546	4.6981E-06	-0.71146	-0.00033577	-0.7015	-0.00033108	471.95190190332465	97.549	0.76205	97.611	97.218	97.98	0.061516					284	85	5	0	0	0	0.48247	1	26157	26157		0.40827	0	1	626880	+		23400	15287	13244	13245	29548	29548					0.14520935648579325
LKEKEEREIEL	11	Unmodified	_LKEKEEREIEL_					0	0	0			REV__ENSG00000198765|ENST00000369522|SYCP1	REV__ENSG00000198765|ENST00000369522|SYCP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2832336425781	3	472.596196	1414.76676	0.23324	0.00011023	2.487	0.0011753	2.7202	0.0012856	472.5975442164533	90.396	0.076004	90.486	90.427	90.503	0.090668					9	6	2	0	0	0	0.3331	1	23940	23940		2.2527	0	1	77360	+		23401	18858	13245	13246	29549	29549					0.07596646278102526
LKEKESRSL	9	Unmodified	_LKEKESRSL_					0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3171997070312	2	545.316763	1088.61897	0.44923	0.00024497	-0.11532	-6.2886E-05	0.33391	0.00018209	545.3167475035995	80.336	3.7431	80.336	79.338	83.081	0					624	150	6	0	0	0	0.29638	2	20841	20747;20841		9.3831	0	1	16346000	+		23402	16557	13246	13247	29550;29551	29551					0.07820799534761136
LKEKESRSL	9	Unmodified	_LKEKESRSL_					0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3169555664062	2	545.316763	1088.61897	0.44591	0.00024316	-0.03167	-1.727E-05	0.41424	0.00022589	545.3167857690152	80.248	3.793	80.313	79.277	83.07	0.065102					607	160	5	0	0	0	0.29638	1	20771	20771		9.3831	0	1	16780000	+		23403	16557	13246	13247	29552	29552					0.07820799534761136
LKEKESRSL	9	Unmodified	_LKEKESRSL_					0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.316650390625	2	545.316763	1088.61897	0.6091	0.00033216	-0.26726	-0.00014574	0.34184	0.00018641	545.3166247243353	80.334	3.1168	80.308	79.473	82.59	-0.026817					523	123	6	0	0	0	0.29638	2	20710	20710;20753		9.3831	0	1	17985000	+		23404	16557	13246	13247	29553;29554	29553					0.07820799534761136
LKEKKKEKDI	10	Unmodified	_LKEKKKEKDI_					0	0	0		nc|ENSG00000135899|Q9HB58-4|SP110;nc|ENSG00000135899|Q9HB58-2|SP110;nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110	nc|ENSG00000135899|Q9HB58-4|SP110	nc|ENSG00000135899|Q9HB58-4|SP110	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.2627868652344	3	420.262489	1257.76564	0.32621	0.0001371	0.26257	0.00011035	0.58879	0.00024745	420.2625848993845	21.038	0.89939	20.928	20.699	21.599	-0.11003					61	31	3	0	0	0	0.37297	1	2739	2739		8.4443	0	1	263160			23405	3915	13247	13248	29555	29555					0.14706476699825544
LKEKKKEKDI	10	Unmodified	_LKEKKKEKDI_					0	0	0		nc|ENSG00000135899|Q9HB58-4|SP110;nc|ENSG00000135899|Q9HB58-2|SP110;nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110	nc|ENSG00000135899|Q9HB58-4|SP110	nc|ENSG00000135899|Q9HB58-4|SP110	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	420.262489	1257.76564	0.079246	3.3304E-05	0.41011	0.00017235	0.48936	0.00020566	420.262659615221	20.811	0.97154	20.811	20.487	21.459	0	-0.068529	0.00012834	NaN	8.4443	77	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205040			23406	3915	13247	13248							0.14706476699825544
LKEKKKEKDI	10	Unmodified	_LKEKKKEKDI_					0	0	0		nc|ENSG00000135899|Q9HB58-4|SP110;nc|ENSG00000135899|Q9HB58-2|SP110;nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110	nc|ENSG00000135899|Q9HB58-4|SP110	nc|ENSG00000135899|Q9HB58-4|SP110	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	420.262489	1257.76564	0.32621	0.0001371	0.26257	0.00011035	0.58879	0.00024745	420.2625848993845	21.038	0.89939	20.928	20.699	21.599	-0.11003	0.047905	-5.7674E-05	NaN	8.4443	61	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263160			23407	3915	13247	13248							0.14706476699825544
LKEKKKEKDI	10	Unmodified	_LKEKKKEKDI_					0	0	0		nc|ENSG00000135899|Q9HB58-4|SP110;nc|ENSG00000135899|Q9HB58-2|SP110;nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110	nc|ENSG00000135899|Q9HB58-4|SP110	nc|ENSG00000135899|Q9HB58-4|SP110	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	420.262489	1257.76564	0.23892	0.00010041	0.23896	0.00010043	0.47788	0.00020084	420.26261816416326	20.953	0.93277	20.9	20.638	21.571	-0.052912	0.020624	-8.7441E-05	NaN	8.4443	72	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225170			23408	3915	13247	13248							0.14706476699825544
LKEKTLPGAKG	11	Unmodified	_LKEKTLPGAKG_					0	0	0			REV__PXN|p.P202L|1|0.25|ENSG00000089159|chr12:120222639-120222639|G/A|missense_variant	REV__PXN|p.P202L|1|0.25|ENSG00000089159|chr12:120222639-120222639|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.3516235351562	2	571.350606	1140.68666	0.39375	0.00022497	0.9507	0.00054318	1.3444	0.00076815	571.3511300889061	29.452	0.69879	29.464	29.218	29.917	0.012266					53	23	3	0	0	0	0.44828	1	5319	5319		4.897	0.36815	1	343310	+		23409	23294	13248	13249	29556	29556					0.12194249465551366
LKELCTSPRCK	11	Unmodified	_LKELCTSPRCK_					0	0	0		ENSG00000109089|ENST00000337231|CDR2L	ENSG00000109089|ENST00000337231|CDR2L	ENSG00000109089|ENST00000337231|CDR2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.24176025390625	3	426.561664	1276.66316	0.018961	8.0882E-06	-0.72287	-0.00030835	-0.7039	-0.00030026	426.56124700921214	30.313	0.25001	30.313	30.141	30.391	0					11	8	2	0	0	0	0.32625	1	5543	5543		16.275	1.3174	1	78353			23410	2234	13249	13250	29557	29557					0.0358974436508106
LKELEKHKI	9	Unmodified	_LKELEKHKI_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;DCTN1|p.G1216Efs*33|1|0.17|ENSG00000204843|chr2:74362104-74362104|C/-|frameshift_variant;ENST00000466110.5_1_2:74595806-74598423:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.3533935546875	2	569.353148	1136.69174	-0.026819	-1.5269E-05	-1.6088	-0.000916	-1.6357	-0.00093127	569.3522686211369	24.771	0.41679	24.74	24.571	24.988	-0.031408					18	13	2	0	0	0	0.33276	1	3857	3857		3.9444	0	1	59487			23411	8258	13250	13251	29558	29558					0.12886553328166883
LKELIPKVESQ	11	Unmodified	_LKELIPKVESQ_					0	0	0			REV__ENSG00000105568|ENST00000322088|PPP2R1A	REV__ENSG00000105568|ENST00000322088|PPP2R1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.3621826171875	2	642.382103	1282.74965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.91	1	112.89	112.39	113.39	-0.017303								0	0	0	0.37609	1	29359	29359		2.4985	0	1		+		23412	14465	13251	13252	29559	29559					0.11958770462956636
LKELIVPAKKV	11	Unmodified	_LKELIVPAKKV_					0	0	0			REV__nc|ENSG00000138347|Q86TC9-2|MYPN	REV__nc|ENSG00000138347|Q86TC9-2|MYPN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.4041748046875	2	619.415749	1236.81694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.91	1	102.91	102.41	103.41	-0.0033646								0	0	0	0.37609	1	27387	27387		2.4985	1.0166	1		+		23413	15920	13252	13253	29560	29560					0.20800845464555096
LKELLLGLNPF	11	Unmodified	_LKELLLGLNPF_					0	0	0			REV__ENSG00000184677|ENST00000375647|ZBTB40	REV__ENSG00000184677|ENST00000375647|ZBTB40	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.8834838867188	2	628.884281	1255.75401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.2	1	105.21	104.71	105.71	0.0031738								0	0	0	0.37707	1	27913	27913		2.2828	0.19677	1		+		23414	18329	13253	13254	29561	29561					0.13636279676507002
LKELQGRHIK	10	Unmodified	_LKELQGRHIK_					0	0	0			REV__ENSG00000100629|ENST00000555265|CEP128	REV__ENSG00000100629|ENST00000555265|CEP128	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.37451171875	2	611.374946	1220.73534	0.1065	6.511E-05	-1.2036	-0.00073583	-1.0971	-0.00067072	611.37388067777	102.97	0.45949	102.99	102.54	103	0.015442					92	62	2	0	0	0	0.39227	1	27359	27359		4.897	0.36815	1	2069500	+		23415	14218	13254	13255	29562	29562					0.1338016282531953
LKELRAAGRR	10	Unmodified	_LKELRAAGRR_					0	0	0			REV__GXYLT2|p.F134Lfs*16|1|0.56|ENSG00000172986|chr3:72908489-72908489|T/-|frameshift_variant	REV__GXYLT2|p.F134Lfs*16|1|0.56|ENSG00000172986|chr3:72908489-72908489|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.36474609375	2	585.364913	1168.71527	0.32364	0.00018945	-0.49491	-0.0002897	-0.17127	-0.00010026	585.3644971519268	87.341	1.0019	87.428	87.119	88.121	0.08709					116	51	3	0	0	0	0.39009	1	23049	23049		5.2969	0.96765	1	573920	+		23416	17753	13255	13256	29563	29563					0.1376641188535359
LKELRAAGRR	10	Unmodified	_LKELRAAGRR_					0	0	0			REV__GXYLT2|p.F134Lfs*16|1|0.56|ENSG00000172986|chr3:72908489-72908489|T/-|frameshift_variant	REV__GXYLT2|p.F134Lfs*16|1|0.56|ENSG00000172986|chr3:72908489-72908489|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	585.364913	1168.71527	0.4904	0.00028706	-0.73167	-0.00042829	-0.24127	-0.00014123	585.3643501907497	87.481	0.9489	87.481	87.216	88.165	0	0.038044	-0.00017329	NaN	5.2969	84	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411650	+		23417	17753	13255	13256							0.1376641188535359
LKELRAAGRR	10	Unmodified	_LKELRAAGRR_					0	0	0			REV__GXYLT2|p.F134Lfs*16|1|0.56|ENSG00000172986|chr3:72908489-72908489|T/-|frameshift_variant	REV__GXYLT2|p.F134Lfs*16|1|0.56|ENSG00000172986|chr3:72908489-72908489|T/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	585.364913	1168.71527	0.45557	0.00026667	-0.61263	-0.00035861	-0.15706	-9.194E-05	585.3644526265834	87.426	1.2175	87.42	86.796	88.013	-0.0056229	-0.022836	-3.3932E-05	NaN	5.2969	115	47	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	805780	+		23418	17753	13255	13256							0.1376641188535359
LKELRHLK	8	Unmodified	_LKELRHLK_					0	0	0		ENST00000485726.1_1_7:103828364-103848439:-|nuORF;ENST00000463152.5_1_7:103824789-103838202:-|nuORF	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2953491210938	2	518.834926	1035.6553	0.47807	0.00024804	-0.32623	-0.00016926	0.15184	7.878E-05	518.8347053068568	40.604	0.6078	40.697	40.474	41.082	0.09267					32	22	2	0	0	0	0.34092	1	8759	8759		4.756	2.4533	1	395210			23419	11094	13256	13257	29564	29564					0.13889721222108165
LKELRHLKM	9	Unmodified	_LKELRHLKM_					0	0	0		ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3746337890625	2	584.355168	1166.69578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.979	1	99.979	99.479	100.48	0								0	0	0	0.26044	1	26730	26730		2.9952	1.151	1				23420	11094	13257	13258	29565	29565					0.11910319550224813
LKELRHLKM	9	Unmodified	_LKELRHLKM_					0	0	0		ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3745727539062	2	584.355168	1166.69578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.59	1	99.641	99.141	100.14	0.050888								0	0	0	0.24066	1	26635	26635		9.3831	6.3879	1				23421	11094	13257	13258	29566	29566					0.11910319550224813
LKELRHLKM	9	Unmodified	_LKELRHLKM_					0	0	0		ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3748779296875	2	584.355168	1166.69578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.708	1	99.758	99.258	100.26	0.049408								0	0	0	0.21673	1	26663	26663		17.113	7.7298	1				23422	11094	13257	13258	29567	29567					0.11910319550224813
LKELRHLKM	9	Unmodified	_LKELRHLKM_					0	0	0		ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.374267578125	2	584.355168	1166.69578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.978	1	100.02	99.517	100.52	0.038994								0	0	0	0.24066	1	26727	26727		9.3831	5.4387	1				23423	11094	13257	13258	29568	29568					0.11910319550224813
LKELRHLKM	9	Unmodified	_LKELRHLKM_					0	0	0		ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3464965820312	2	584.355168	1166.69578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.85	1	102.86	102.36	103.36	0.016685								0	0	0	0.26044	1	27348	27348		2.9952	1.3426	1				23424	11094	13257	13258	29569	29569					0.11910319550224813
LKELSMYLI	9	Unmodified	_LKELSMYLI_					0	0	0			REV__ENSG00000082497|ENST00000367012|SERTAD4	REV__ENSG00000082497|ENST00000367012|SERTAD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7963256835938	2	555.317386	1108.62022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.74	1	112.72	112.22	113.22	-0.015625								0	0	0	0.264	1	29320	29320		1.8442	0.19162	1		+		23425	13922	13258	13259	29570	29570					0.07025297579320977
LKELWSLLHFI	11	Unmodified	_LKELWSLLHFI_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;CHD2|p.N1397Tfs*9|1|0.25|ENSG00000173575|chr15:93002227-93002227|G/-|frameshift_variant;CHD2|p.E1396Rfs*10|1|0.24|ENSG00000173575|chr15:93002225-93002225|G/-|frameshift_variant;nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2	nc|ENSG00000153922|O14646-2|CHD1;ENSG00000173575|ENST00000394196|CHD2	ENSG00000173575|ENST00000394196|CHD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.6237487792969	3	466.942979	1397.80711	-0.3908	-0.00018248	-0.44274	-0.00020673	-0.83354	-0.00038922	466.9427261189983	101.73	0.16519	101.73	101.64	101.8	0					29	20	2	0	0	0	0.33296	1	27121	27121		2.6312	2.6312	1	55727			23426	5093;6730	13259	13260	29571	29571					0.12411657459188064
LKENRSKI	8	Unmodified	_LKENRSKI_					0	0	0			REV__ENST00000237186.10_1_6:83602743-83775466:-|nuORF	REV__ENST00000237186.10_1_6:83602743-83775466:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.30108642578125	2	494.300916	986.587279	0.46114	0.00022794	0.27587	0.00013636	0.73701	0.0003643	494.3009964772224	86.927	1.3022	87.014	86.554	87.856	0.087097					180	59	4	0	0	0	0.44734	1	22957	22957		6.7232	0	1	7757700	+		23427	15010	13260	13261	29572	29572					0.09344851571461277
LKENSTLRPR	10	Unmodified	_LKENSTLRPR_					0	0	0			REV__ENST00000447216.2_1_11:118889505-118891019:+|nuORF	REV__ENST00000447216.2_1_11:118889505-118891019:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.9120178222656	3	405.238566	1212.69387	-0.32181	-0.00013041	0.55513	0.00022496	0.23332	9.455E-05	405.238757805407	25.184	0.81544	25.128	24.888	25.704	-0.055931					43	28	2	0	0	0	0.32015	1	3938	3938		5.0475	1.1712	1	166010	+		23428	18673	13261	13262	29573	29573					0.09602982065985088
LKEQKERA	8	Unmodified	_LKEQKERA_					0	0	0		ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.29083251953125	2	501.290548	1000.56654	0.52669	0.00026403	0.14869	7.4535E-05	0.67538	0.00033856	501.29054346495025	76.365	3.7346	76.334	75.286	79.021	-0.031479					432	140	4	0	0	0	0.40115	7	19535	19486;19535;19579;19627;19951;19993;20037		19.257	3.1079	1	8319600			23429	7541	13262	13263	29574;29575;29576;29577;29578;29579;29580	29575					0.06628261191792717
LKEQKERA	8	Unmodified	_LKEQKERA_					0	0	0		ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	501.290548	1000.56654	0.36421	0.00018258	0.30739	0.00015409	0.6716	0.00033667	501.2906266147386	76.332	3.267	76.332	75.291	78.558	0	0.017759	6.2941E-05	NaN	19.257	420	120	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8841500			23430	7541	13262	13263							0.06628261191792717
LKEQKERA	8	Unmodified	_LKEQKERA_					0	0	0		ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	ENSG00000185522|ENST00000329451|LMNTD2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	501.290548	1000.56654	0.36236	0.00018165	0.25494	0.0001278	0.61731	0.00030945	501.29061852363355	76.224	2.895	76.278	76.189	79.084	0.053413	-0.036923	1.0362E-05	NaN	19.257	335	106	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7986300			23431	7541	13262	13263							0.06628261191792717
LKEREILT	8	Unmodified	_LKEREILT_					0	0	0		nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.291015625	2	501.303124	1000.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.361	1	77.361	76.861	77.861	0								0	0	0	0.36863	1	19965	19965		6.2058	0	1				23432	7889	13263	13264	29581	29581					0.09142315994370165
LKEREILT	8	Unmodified	_LKEREILT_					0	0	0		nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.29095458984375	2	501.303124	1000.5917	0.46666	0.00023394	-1.3522	-0.00067788	-0.88558	-0.00044394	501.30240035173296	89.294	0.88222	89.294	88.527	89.41	0					48	38	2	0	0	0	0.32099	1	23435	23435		13.906	0	1	144540			23433	7889	13263	13264	29582	29582					0.09142315994370165
LKEREILT	8	Unmodified	_LKEREILT_					0	0	0		nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.290771484375	2	501.303124	1000.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.369	1	79.431	78.931	79.931	0.061417								0	0	0	0.35163	1	20568	20568		13.906	0	1				23434	7889	13263	13264	29583	29583					0.09142315994370165
LKEREILT	8	Unmodified	_LKEREILT_					0	0	0		nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.29058837890625	2	501.303124	1000.5917	0.58675	0.00029414	-0.056174	-2.816E-05	0.53058	0.00026598	501.3031827760254	79.377	1.0109	79.348	78.716	79.727	-0.028931					58	41	2	0	0	0	0.42371	2	20640	20543;20640		14.838	0	1	119550			23435	7889	13263	13264	29584;29585	29585					0.09142315994370165
LKERLTKI	8	Unmodified	_LKERLTKI_					0	0	0		nc|ENSG00000154359|Q17RB8-2|LONRF1;ENSG00000154359|ENST00000398246|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8293762207031	2	500.829309	999.644065	0.19707	9.8698E-05	-0.31192	-0.00015622	-0.11486	-5.7523E-05	500.8290532316	38.358	0.89455	38.358	38.064	38.958	0					79	31	4	0	0	0	0.11593	1	7964	7964		57.722	0	1	2368800			23436	5125	13264	13265	29586	29586					0.14422899127964683
LKERLTKI	8	Unmodified	_LKERLTKI_					0	0	0		nc|ENSG00000154359|Q17RB8-2|LONRF1;ENSG00000154359|ENST00000398246|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8292236328125	2	500.829309	999.644065	0.4065	0.00020359	-0.6375	-0.00031928	-0.231	-0.00011569	500.82890084055964	38.29	0.92449	38.381	38.101	39.026	0.090881					76	33	3	0	0	0	0.15195	1	7989	7989		51.415	1.8609	1	2274000			23437	5125	13264	13265	29587	29587					0.14422899127964683
LKERLTKI	8	Unmodified	_LKERLTKI_					0	0	0		nc|ENSG00000154359|Q17RB8-2|LONRF1;ENSG00000154359|ENST00000398246|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	nc|ENSG00000154359|Q17RB8-2|LONRF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.82916259765625	2	500.829309	999.644065	0.34159	0.00017108	-0.53313	-0.00026701	-0.19154	-9.5927E-05	500.82894071708176	38.282	0.85649	38.379	38.064	38.921	0.097527					83	30	4	0	0	0	0.15195	1	7975	7975		51.415	1.8609	1	1917300			23438	5125	13264	13265	29588	29588					0.14422899127964683
LKERQKKD	8	Unmodified	_LKERQKKD_					0	0	0		ENSG00000068323|ENST00000315869|TFE3	ENSG00000068323|ENST00000315869|TFE3	ENSG00000068323|ENST00000315869|TFE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8119506835938	2	522.811648	1043.60874	0.52243	0.00027313	0.34055	0.00017805	0.86298	0.00045118	522.8116124860893	86.147	1.1727	86.231	85.863	87.036	0.084251					107	46	4	0	0	0	0.4354	1	22642	22642		10.824	0	1	2057500			23439	880	13265	13266	29589	29589					0.08868236600187629
LKERRLPSPLS	11	Unmodified	_LKERRLPSPLS_					0	0	0			REV__nc|ENSG00000100796|Q6IN85-5|PPP4R3A	REV__nc|ENSG00000100796|Q6IN85-5|PPP4R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	648.3936767578125	2	648.393336	1294.77212	0.15797	0.00010243	0.030807	1.9975E-05	0.18878	0.0001224	648.393405625132	98.676	1.1133	98.727	98.419	99.533	0.050896					328	144	4	0	0	0	0.47633	1	26353	26353		1.1933	0	1	751740	+		23440	14230	13266	13267	29590	29590					0.13652414651232903
LKETTNKQ	8	Unmodified	_LKETTNKQ_					0	0	0			REV__MDM1|p.A433Kfs*66|1|0.03|ENSG00000111554|chr12:68315151-68315152|-/TG|frameshift_variant	REV__MDM1|p.A433Kfs*66|1|0.03|ENSG00000111554|chr12:68315151-68315152|-/TG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2831115722656	2	481.269281	960.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.654	1	90.745	90.245	91.245	0.090668								0	0	0	0.36486	1	24028	24028		7.9102	0.62092	1		+		23441	14725	13267	13268	29591	29591					0.04216866063575253
LKEVKRQIRE	10	Unmodified	_LKEVKRQIRE_					0	0	0			REV__ENSG00000070367|ENST00000621441|EXOC5	REV__ENSG00000070367|ENST00000621441|EXOC5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8980102539062	2	649.898786	1297.78302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.206	1	93.206	92.706	93.706	0								0	0	0	0.38104	1	24818	24818		0.35063	0	1		+		23442	13725	13268	13269	29592	29592					0.14603817025476928
LKEVKRQIRE	10	Unmodified	_LKEVKRQIRE_					0	0	0			REV__ENSG00000070367|ENST00000621441|EXOC5	REV__ENSG00000070367|ENST00000621441|EXOC5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8980102539062	2	649.898786	1297.78302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.254	1	93.254	92.754	93.754	0								0	0	0	0.37235	1	24832	24832		2.9952	0	1		+		23443	13725	13268	13269	29593	29593					0.14603817025476928
LKEVQQVTSK	10	Unmodified	_LKEVQQVTSK_					0	0	0		CON__P09870	CON__P09870	CON__P09870	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3359985351562	2	580.337695	1158.66084	0.45617	0.00026473	-1.2639	-0.00073347	-0.80769	-0.00046873	580.3365467750687	91.675	0.73972	91.675	91.465	92.205	0.00046539					69	47	2	0	0	0	0.40262	2	24309	24309;24440		2.9952	0	1	207040		+	23444	216	13269	13270	29594;29595	29594					0.08785355223267288
LKEYSDRK	8	Unmodified	_LKEYSDRK_					0	0	0			REV__ENSG00000177409|ENST00000318238|SAMD9L	REV__ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7843627929688	2	519.782556	1037.55056	0.36998	0.00019231	0.28685	0.0001491	0.65683	0.00034141	519.7828016903057	55.478	1.075	55.478	54.917	55.992	0					92	38	3	0	0	0	0.37071	1	13151	13151		22.736	1.1993	1	5212900	+		23445	17987	13270	13271	29596	29596					0.0332855495489639
LKEYSDRK	8	Unmodified	_LKEYSDRK_					0	0	0			REV__ENSG00000177409|ENST00000318238|SAMD9L	REV__ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7843627929688	2	519.782556	1037.55056	0.37074	0.0001927	0.56118	0.00029169	0.93192	0.00048439	519.7829530921279	55.541	1.0808	55.522	55.052	56.133	-0.019081					87	39	3	0	0	0	0.37071	1	13172	13172		22.736	1.1993	1	5758400	+		23446	17987	13270	13271	29597	29597					0.0332855495489639
LKFFLCVF	8	Unmodified	_LKFFLCVF_					0	0	0			REV__ENST00000403263.5_1_2:206863772-206864039:-|nuORF	REV__ENST00000403263.5_1_2:206863772-206864039:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7799377441406	2	508.785524	1015.5565	0.0093631	4.7638E-06	0.9762	0.00049667	0.98556	0.00050144	508.78554547035	28.168	0.30967	28.164	28.024	28.333	-0.0042572					14	10	2	0	0	0	0.33916	1	4860	4860		26.341	1.3503	1	111460	+		23447	20720	13271	13272	29598	29598					0.04933981932856568
LKFWRTRFLLL	11	Unmodified	_LKFWRTRFLLL_					0	0	0		nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5	nc|ENSG00000100150|O75140-5|DEPDC5	nc|ENSG00000100150|O75140-5|DEPDC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3099365234375	3	498.309885	1491.90782	0.342	0.00017042	-0.10935	-5.4492E-05	0.23265	0.00011593	498.3096617876876	91.999	0.60635	91.999	91.725	92.331	0					118	40	4	0	0	0	0.48486	2	24494	24494;24541		0.094841	0.021578	1	740840			23448	12611	13272	13273	29599;29600	29599					0.18154734232712144
LKFWRTRFLLL	11	Unmodified	_LKFWRTRFLLL_					0	0	0		nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5	nc|ENSG00000100150|O75140-5|DEPDC5	nc|ENSG00000100150|O75140-5|DEPDC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.64447021484375	3	498.309885	1491.90782	0.27655	0.00013781	0.016032	7.989E-06	0.29258	0.00014579	498.30975734808266	93.412	1.1014	93.412	92.654	93.755	0					268	95	4	0	0	0	0.48558	1	24770	24770		0	0	1	1266800			23449	12611	13272	13273	29601	29601					0.18154734232712144
LKFWRTRFLLL	11	Unmodified	_LKFWRTRFLLL_					0	0	0		nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5	nc|ENSG00000100150|O75140-5|DEPDC5	nc|ENSG00000100150|O75140-5|DEPDC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.30975341796875	3	498.309885	1491.90782	0.37882	0.00018877	-0.062916	-3.1352E-05	0.31591	0.00015742	498.3097733753652	91.836	1.3092	91.927	91.318	92.627	0.090675					269	92	4	0	0	0	0.48486	2	24470	24470;24553		0.094841	0.094841	1	1500100			23450	12611	13272	13273	29602;29603	29602					0.18154734232712144
LKGAHLAL	8	Unmodified	_LKGAHLAL_					0	0	0			REV__ENSG00000168434|ENST00000307149|COG7	REV__ENSG00000168434|ENST00000307149|COG7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.22052001953125	2	411.763438	821.512323	0.33156	0.00013652	-0.3294	-0.00013563	0.0021561	8.8781E-07	411.7633107292157	40.681	0.88061	40.774	40.228	41.109	0.09267					43	32	2	0	0	0	0.34434	1	8533	8533		0.79363	0	1	380160	+		23451	17459	13273	13274	29604	29604					0.09442713830867433
LKGIFTRPS	9	Unmodified	_LKGIFTRPS_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8042297363281	2	509.805834	1017.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.31	1	112.29	111.79	112.79	-0.015625								0	0	0	0.2646	1	29215	29215		1.6526	0.17072	1				23452	3514	13274	13275	29605	29605					0.08902039576832976
LKGPLSER	8	Unmodified	_LKGPLSER_					0	0	0			REV__ENST00000496115.1_1_3:3842568-3842844:+|nuORF	REV__ENST00000496115.1_1_3:3842568-3842844:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7646179199219	2	450.269084	898.523616	0.15114	6.8054E-05	0.40425	0.00018202	0.5554	0.00025008	450.2692548783257	65.565	1.4435	65.554	64.809	66.253	-0.011337					83	52	3	0	0	0	0.34039	1	16462	16462		10.824	0	1	251850	+		23453	21667	13275	13276	29606	29606					0.07029491134380805
LKGSLLQPR	9	Unmodified	_LKGSLLQPR_					0	0	0		ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2737121582031	2	506.319109	1010.62366	0.17586	8.9039E-05	0.37067	0.00018768	0.54653	0.00027672	506.31944450224927	26.212	0.37047	26.212	26.009	26.379	0					15	12	2	0	0	0	0.25706	1	4301	4301		6.7232	0	1	60050			23454	8092	13276	13277	29607	29607					0.11877728468186888
LKGSLLQPR	9	Unmodified	_LKGSLLQPR_					0	0	0		ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.27374267578125	2	506.319109	1010.62366	0.12488	6.323E-05	0.5772	0.00029225	0.70208	0.00035548	506.31931820928133	26.169	0.25291	26.13	26.01	26.263	-0.038671					14	8	2	0	0	0	0.25706	1	4303	4303		6.7232	0.51738	1	56233			23455	8092	13276	13277	29608	29608					0.11877728468186888
LKGSLLQPR	9	Unmodified	_LKGSLLQPR_					0	0	0		ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.27374267578125	2	506.319109	1010.62366	0.29815	0.00015096	0.64637	0.00032727	0.94452	0.00047823	506.31963803268576	26.217	0.28539	26.195	26.043	26.328	-0.022238					17	9	2	0	0	0	0.25323	1	4324	4324		10.074	1.3285	1	69027			23456	8092	13276	13277	29609	29609					0.11877728468186888
LKGSSHGSK	9	Unmodified	_LKGSSHGSK_					0	0	0			REV__ENSG00000182095|ENST00000430969|TNRC18	REV__ENSG00000182095|ENST00000430969|TNRC18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.78411865234375	2	450.748516	899.482479	-0.10282	-4.6348E-05	-0.59352	-0.00026753	-0.69634	-0.00031387	450.74828906857084	12.36	0.14675	12.263	12.148	12.295	-0.096607					6	4	2	0	0	0	0.26188	1	87	87		1.6526	0.85899	1	12213	+		23457	18177	13277	13278	29610	29610					0.02871730094909708
LKGSSHGSK	9	Unmodified	_LKGSSHGSK_					0	0	0			REV__ENSG00000182095|ENST00000430969|TNRC18	REV__ENSG00000182095|ENST00000430969|TNRC18	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	450.748516	899.482479	-0.23215	-0.00010464	-0.1747	-7.8744E-05	-0.40685	-0.00018339	450.7483720756172	12.385	0.20963	12.317	12.196	12.405	-0.06806	0.010474	0.00044427	NaN	1.6526	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14150	+		23458	18177	13277	13278							0.02871730094909708
LKHAPVTL	8	Unmodified	_LKHAPVTL_					0	0	0			REV__ENST00000374089.5_1_1:27426800-27429818:-|nuORF	REV__ENST00000374089.5_1_1:27426800-27429818:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.26995849609375	2	439.776545	877.538538	0.20074	8.8282E-05	-0.086718	-3.8136E-05	0.11402	5.0145E-05	439.77639309014734	43.425	0.7691	43.503	43.206	43.975	0.077518					57	27	3	0	0	0	0.30503	1	9675	9675		23.148	0	1	403200	+		23459	14035	13278	13279	29611	29611					0.09486983002375382
LKHAPVTL	8	Unmodified	_LKHAPVTL_					0	0	0			REV__ENST00000374089.5_1_1:27426800-27429818:-|nuORF	REV__ENST00000374089.5_1_1:27426800-27429818:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.2699279785156	2	439.776545	877.538538	0.17481	7.6876E-05	0.077885	3.4252E-05	0.25269	0.00011113	439.7764282464046	43.403	0.82993	43.487	43.061	43.891	0.083996					59	30	3	0	0	0	0.30503	1	9639	9639		30.225	0	1	457680	+		23460	14035	13278	13279	29612	29612					0.09486983002375382
LKHLHPIV	8	Unmodified	_LKHLHPIV_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.3311767578125	2	478.805637	955.596721	0.53308	0.00025524	-1.3068	-0.0006257	-0.77371	-0.00037046	478.8048728335866	54.709	0.34056	54.709	54.496	54.837	0					17	12	2	0	0	0	0.34297	1	13021	13021		6.3541	0	1	110760	+		23461	15675	13279	13280	29613	29613					0.11714664647649897
LKHLPERRG	9	Unmodified	_LKHLPERRG_					0	0	0		ENST00000523377.1_1_6:90345603-90345654:-|nuORF	ENST00000523377.1_1_6:90345603-90345654:-|nuORF	ENST00000523377.1_1_6:90345603-90345654:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.83154296875	2	553.333082	1104.65161	0.42498	0.00023516	-2.4479	-0.0013545	-2.0229	-0.0011193	553.3324526209802	86.571	2.1329	86.656	86.209	88.342	0.084251					198	99	4	0	0	0	0.33276	1	22939	22939		3.9444	0.66309	1	1127700			23462	11510	13280	13281	29614	29614					0.10347051448275124
LKHTAFATF	9	Unmodified	_LKHTAFATF_					0	0	0		ENSG00000185946|ENST00000423855|RNPC3;nc|ENSG00000185946|Q96LT9-2|RNPC3;ENST00000605810.1_1_3:70175532-70175664:-|nuORF	ENSG00000185946|ENST00000423855|RNPC3	ENSG00000185946|ENST00000423855|RNPC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2379150390625	2	518.284734	1034.55492	0.30706	0.00015914	2.1977	0.001139	2.5047	0.0012982	518.2853414741265	22.04	0.2414	21.94	21.832	22.074	-0.10034					15	8	2	0	0	0	0.25938	1	3066	3066		4.3292	0.38484	1	130880			23463	7570	13281	13282	29615	29615					0.03902064168460129
LKHTAFATF	9	Unmodified	_LKHTAFATF_					0	0	0		ENSG00000185946|ENST00000423855|RNPC3;nc|ENSG00000185946|Q96LT9-2|RNPC3;ENST00000605810.1_1_3:70175532-70175664:-|nuORF	ENSG00000185946|ENST00000423855|RNPC3	ENSG00000185946|ENST00000423855|RNPC3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	518.284734	1034.55492	0.32457	0.00016822	2.028	0.0010511	2.3526	0.0012193	518.2851200379879	21.969	0.22546	21.969	21.819	22.045	0	0.014734	-0.00022452	NaN	4.3292	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62817			23464	7570	13281	13282							0.03902064168460129
LKHTAFATF	9	Unmodified	_LKHTAFATF_					0	0	0		ENSG00000185946|ENST00000423855|RNPC3;nc|ENSG00000185946|Q96LT9-2|RNPC3;ENST00000605810.1_1_3:70175532-70175664:-|nuORF	ENSG00000185946|ENST00000423855|RNPC3	ENSG00000185946|ENST00000423855|RNPC3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	518.284734	1034.55492	0.17776	9.213E-05	2.4796	0.0012851	2.6573	0.0013773	518.2845912858224	22.004	0.26024	21.954	21.83	22.09	-0.049377	1.028E-05	0.00024359	NaN	4.3292	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83056			23465	7570	13281	13282							0.03902064168460129
LKICLLTFF	9	Unmodified	_LKICLLTFF_					0	0	0		ENST00000609590.1_1_6:167417170-167417329:+|nuORF	ENST00000609590.1_1_6:167417170-167417329:+|nuORF	ENST00000609590.1_1_6:167417170-167417329:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3250732421875	2	549.325014	1096.63547	0.26925	0.0001479	-0.17759	-9.7555E-05	0.091657	5.0349E-05	549.3247021746782	15.39	0.54041	15.28	15.038	15.579	-0.10981					35	18	3	0	0	0	0.31038	1	1021	1021		7.2892	0.56607	1	132450			23466	12330	13282	13283	29616	29616					0.0910220916716753
LKIDFDRLLKW	11	Unmodified	_LKIDFDRLLKW_					0	0	0			REV__ENSG00000165392|ENST00000298139|WRN	REV__ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2763366699219	3	482.953767	1445.83947	0.24619	0.0001189	-0.3827	-0.00018483	-0.13651	-6.5928E-05	482.95382359453856	59.111	0.27936	59.202	58.983	59.262	0.091301					13	9	2	0	0	0	0.33334	1	14331	14331		1.2148	0	1	122250	+		23467	17233	13283	13284	29617	29617					0.13438444862163124
LKIDPSNKI	9	Unmodified	_LKIDPSNKI_					0	0	0		ENSG00000256061|ENST00000321149|DNAAF4	ENSG00000256061|ENST00000321149|DNAAF4	ENSG00000256061|ENST00000321149|DNAAF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8084716796875	2	514.310949	1026.60735	0.15142	7.7879E-05	-0.77657	-0.0003994	-0.62514	-0.00032152	514.3104977663409	42.409	0.64916	42.5	42.095	42.744	0.091362					31	22	2	0	0	0	0.24688	1	9249	9249		6.2058	0.9089	1	1028600			23468	8623	13284	13285	29618	29618					0.09510602511409161
LKIFICWARTK	11	Unmodified	_LKIFICWARTK_					0	0	0			REV__nc|ENSG00000187720|Q6ZMP0-3|THSD4	REV__nc|ENSG00000187720|Q6ZMP0-3|THSD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7750244140625	3	460.272442	1377.7955	-0.15874	-7.3063E-05	-1.8924	-0.00087104	-2.0512	-0.00094411	460.27180458737143	14.436	0.32691	14.37	14.261	14.588	-0.066067					25	11	4	0	0	0	0.33025	1	773	773		9.2438	0.49199	1	52760	+		23469	23142	13285	13286	29619	29619					0.12171137164159518
LKILSKTLA	9	Unmodified	_LKILSKTLA_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.2546081542969	2	493.83406	985.653567	0.10103	4.9893E-05	0.029648	1.4641E-05	0.13068	6.4534E-05	493.8340135548022	29.839	0.3849	29.852	29.653	30.038	0.013474					19	12	2	0	0	0	0.26145	1	5340	5340		2.0598	0	1	118820			23470	1448	13286	13287	29620	29620					0.16016667413509822
LKINNSKHR	9	Unmodified	_LKINNSKHR_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3305053710938	2	555.330539	1108.64652	0.24203	0.00013441	-0.13682	-7.5981E-05	0.10521	5.8427E-05	555.3303870067369	26.947	0.7726	26.947	26.729	27.502	0					60	26	3	0	0	0	0.31038	1	4517	4517		7.2892	0	1	347440			23471	2868	13287	13288	29621	29621					0.09654747585636869
LKIQDVHLRF	10	Unmodified	_LKIQDVHLRF_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2696838378906	3	423.587307	1267.74009	-0.099615	-4.2196E-05	-3.735	-0.0015821	-3.8346	-0.0016243	423.58545011760947	28.731	0.37386	28.731	28.578	28.952	0					15	12	2	0	0	0	0.31867	1	5092	5092		7.9454	1.3219	1	42254			23472	644	13288	13289	29622	29622					0.1169304696807103
LKIQERTYSL	10	Unmodified	_LKIQERTYSL_					0	0	0		ENSG00000003987|ENST00000180173|MTMR7;nc|ENSG00000003987|Q9Y216-2|MTMR7	ENSG00000003987|ENST00000180173|MTMR7	ENSG00000003987|ENST00000180173|MTMR7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.9205627441406	3	417.574955	1249.70304	0.23329	9.7414E-05	1.0876	0.00045417	1.3209	0.00055159	417.57517140023805	39.993	1.217	40.092	39.262	40.479	0.099407					54	43	2	0	0	0	0.37297	1	8571	8571		8.4443	0	1	366760			23473	304	13289	13290	29623	29623					0.08817330631677578
LKKELQEKRKA	11	Unmodified	_LKKELQEKRKA_					0	0	0		nc|ENSG00000174844|Q6ZR08|DNAH12;ENSG00000174844|ENST00000495027|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	nc|ENSG00000174844|Q6ZR08|DNAH12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.62060546875	3	457.620788	1369.84053	0.10649	4.873E-05	-0.22861	-0.00010462	-0.12213	-5.5887E-05	457.62037791313065	106.33	0.13062	106.33	106.27	106.4	0.0050507					53	18	4	0	0	0	0.45422	1	28154	28154		4.1166	0.52395	1	2002600			23474	6822	13290	13291	29624	29624					0.17040659231065547
LKKEVWGF	8	Unmodified	_LKKEVWGF_					0	0	0		ENST00000471538.1_1_1:16200459-16203174:+|nuORF	ENST00000471538.1_1_1:16200459-16203174:+|nuORF	ENST00000471538.1_1_1:16200459-16203174:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.2265625	2	503.789653	1005.56475	0.40317	0.00020311	0.29851	0.00015039	0.70168	0.0003535	503.78960802765334	64.767	0.64468	64.767	64.513	65.157	0					55	23	3	0	0	0	0.34092	1	16055	16055		8.5933	0	1	754740			23475	10877	13291	13292	29625	29625					0.0621925217384387
LKKLDEQYQK	10	Unmodified	_LKKLDEQYQK_					0	0	0		nc|ENSG00000155959|P61758-2|VBP1;ENSG00000155959|ENST00000286428|VBP1	nc|ENSG00000155959|P61758-2|VBP1	nc|ENSG00000155959|P61758-2|VBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.8616943359375	2	646.864077	1291.7136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.43	1	103.43	102.93	103.93	0								0	0	0	0.37807	1	27482	27482		2.9952	1.5133	1				23476	5206	13292	13293	29626	29626					0.07941313286073637
LKKLLCVF	8	Unmodified	_LKKLLCVF_					0	0	0		ENST00000262605.8_1_20:43119153-43119294:+|nuORF	ENST00000262605.8_1_20:43119153-43119294:+|nuORF	ENST00000262605.8_1_20:43119153-43119294:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.3065490722656	2	482.306624	962.598695	0.44235	0.00021335	-0.38638	-0.00018635	0.055963	2.6991E-05	482.3062199315492	78.802	0.83315	78.86	78.499	79.332	0.058151					79	35	3	0	0	0	0.46461	1	20389	20389		0.79363	0.79363	1	304140			23477	8986	13293	13294	29627	29627					0.11589957341243462
LKKQLKLHRK	10	Unmodified	_LKKQLKLHRK_					0	0	0		nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.437744140625	2	646.437881	1290.86121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.17	1	112.17	111.67	112.67	0								0	0	0	0.38202	1	29166	29166		0.40072	0.093686	1				23478	7754	13294	13295	29628	29628					0.22741294401384948
LKKQLKLHRK	10	Unmodified	_LKKQLKLHRK_					0	0	0		nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.4374389648438	2	646.437881	1290.86121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.58	1	112.58	112.08	113.08	0								0	0	0	0.38202	1	29259	29259		0.40072	0.093686	1				23479	7754	13294	13295	29629	29629					0.22741294401384948
LKKQLKLHRK	10	Unmodified	_LKKQLKLHRK_					0	0	0		nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.4369506835938	2	646.437881	1290.86121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.66	1	112.64	112.14	113.14	-0.015625								0	0	0	0.38202	1	29302	29302		0.40072	0.050084	1				23480	7754	13294	13295	29630	29630					0.22741294401384948
LKKQLKLHRK	10	Unmodified	_LKKQLKLHRK_					0	0	0		nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	646.4371337890625	2	646.437881	1290.86121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.53	1	112.54	112.04	113.04	0.0131								0	0	0	0.38202	1	29286	29286		0.40072	0.093686	1				23481	7754	13294	13295	29631	29631					0.22741294401384948
LKKYLELT	8	Unmodified	_LKKYLELT_					0	0	0			REV__ENSG00000104879|ENST00000221476|CKM	REV__ENSG00000104879|ENST00000221476|CKM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.84454345703125	2	504.310418	1006.60628	0.50641	0.00025539	-0.47506	-0.00023958	0.031351	1.5811E-05	504.3099861711814	74.612	0.49188	74.581	74.295	74.787	-0.030655					24	16	2	0	0	0	0.31934	1	19157	19157		24.674	5.2349	1	401040	+		23482	14425	13295	13296	29632	29632					0.10324388142487351
LKLDLIAFT	9	Unmodified	_LKLDLIAFT_					0	0	0			REV__ENSG00000171060|ENST00000304519|C8orf74	REV__ENSG00000171060|ENST00000304519|C8orf74	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3001708984375	2	517.318243	1032.62193	0.4189	0.0002167	-0.30737	-0.00015901	0.11153	5.7697E-05	517.3181214217701	71.523	0.33728	71.523	71.462	71.799	0					16	11	2	0	0	0	0.16284	1	18190	18190		30.637	10.183	1	380730	+		23483	17617	13296	13297	29633	29633					0.10692674659549084
LKLFSDLKF	9	Unmodified	_LKLFSDLKF_					0	0	0			REV__ENST00000454305.1_1_1:77533610-77544072:+|nuORF	REV__ENST00000454305.1_1_1:77533610-77544072:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2744750976562	2	555.831517	1109.64848	0.45582	0.00025336	-1.2815	-0.00071229	-0.82566	-0.00045893	556.3330054285353	57.166	0.099861	57.166	57.09	57.19	0					5	3	2	0	0	0	0.25323	1	13774	13774		10.074	1.4806	1	77796	+		23484	21148	13297	13298	29634	29634					0.09804363550892958
LKLGPIIF	8	Unmodified	_LKLGPIIF_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.78411865234375	2	450.799489	899.584425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.299	1	12.203	11.703	12.703	-0.096607								0	0	0	0.38004	1	87	87		0.69038	0	1		+		23485	13950	13298	13299	29635	29635					0.13061628184618712
LKLIKLLKDIL	11	Unmodified	_LKLIKLLKDIL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|149|1|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|149|1|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.3107604980469	3	437.310891	1308.91084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.44	1	112.44	111.94	112.94	0								0	0	0	0.3823	1	29227	29227		0	0	1		+		23486	22706	13299	13300	29636	29636					0.2687456456685595
LKLIKLLKDIL	11	Unmodified	_LKLIKLLKDIL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|149|1|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|149|1|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.3106994628906	3	437.310891	1308.91084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.19	1	116.21	115.71	116.71	0.020988								0	0	0	0.3823	1	30152	30152		0	0	1		+		23487	22706	13299	13300	29637	29637					0.2687456456685595
LKLISQRSE	9	Unmodified	_LKLISQRSE_					0	0	0			REV__ENSG00000122483|ENST00000690025|CCDC18	REV__ENSG00000122483|ENST00000690025|CCDC18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2669677734375	2	537.319306	1072.62406	0.08043	4.3217E-05	0.44045	0.00023666	0.52088	0.00027988	537.3196029958066	99.455	0.17694	99.455	99.379	99.556	0					29	22	2	0	0	0	0.25988	1	26617	26617		3.9444	0	1	32083	+		23488	15159	13300	13301	29638	29638					0.09065103397369967
LKLTCGKAPR	10	Unmodified	_LKLTCGKAPR_					0	0	0		ENST00000583907.1_1_17:26743951-26744507:+|nuORF	ENST00000583907.1_1_17:26743951-26744507:+|nuORF	ENST00000583907.1_1_17:26743951-26744507:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3010864257812	2	543.826243	1085.63793	0.36301	0.00019742	0.36104	0.00019634	0.72405	0.00039376	543.8263969880442	16.151	0.61036	16.037	15.866	16.476	-0.11434					34	20	2	0	0	0	0.32132	1	1375	1375		0.40072	0	1	120470			23489	12092	13301	13302	29639	29639					0.09854057624806956
LKMKITWK	8	Unmodified	_LKMKITWK_					0	0	0		ENST00000394104.6_1_9:128064677-128064743:+|nuORF	ENST00000394104.6_1_9:128064677-128064743:+|nuORF	ENST00000394104.6_1_9:128064677-128064743:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2987670898438	2	524.322805	1046.63106	0.045197	2.3698E-05	-3.7308	-0.0019561	-3.6856	-0.0019324	524.3210402210822	12.689	0.17916	12.622	12.491	12.671	-0.067496					8	5	2	0	0	0	0.34272	1	196	196		7.9102	0	1	17275			23490	10062	13302	13303	29640	29640					0.10960744744215845
LKNGKMLGP	9	Unmodified	_LKNGKMLGP_					0	0	0			REV__nc|ENSG00000111319|P37088-2|SCNN1A	REV__nc|ENSG00000111319|P37088-2|SCNN1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2899169921875	2	479.281137	956.547722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.572	1	37.572	37.072	38.072	0								0	0	0	0.20639	1	7750	7750		20.454	3.5113	1		+		23491	22939	13303	13304	29641	29641					0.06771008296391301
LKNRVRGWL	9	Unmodified	_LKNRVRGWL_					0	0	0			REV__ENST00000576668.1_1_17:915781-935047:-|nuORF	REV__ENST00000576668.1_1_17:915781-935047:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3511352539062	2	571.351274	1140.688	0.040851	2.334E-05	0.086178	4.9238E-05	0.12703	7.2578E-05	571.3512745935325	29.531	0.55106	29.545	29.329	29.88	0.013475					47	18	3	0	0	0	0.33018	1	5333	5333		4.3292	0	1	404020	+		23492	22452	13304	13305	29642	29642					0.12327928344984684
LKPPDAVFKVV	11	Unmodified	_LKPPDAVFKVV_					0	0	0		ENSG00000170214|ENST00000306675|ADRA1B	ENSG00000170214|ENST00000306675|ADRA1B	ENSG00000170214|ENST00000306675|ADRA1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.869873046875	2	606.871174	1211.72779	0.37921	0.00023013	-2.9453	-0.0017874	-2.5661	-0.0015573	606.8697252563185	16.951	0.39817	16.89	16.704	17.103	-0.061287					22	14	2	0	0	0	0.46475	1	1474	1474		2.7352	0	1	45582			23493	6431	13305	13306	29643	29643					0.13040010505028476
LKPPMMIRLL	10	Unmodified	_LKPPMMIRLL_					0	0	0			REV__ENSG00000153936|ENST00000370550|HS2ST1	REV__ENSG00000153936|ENST00000370550|HS2ST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3717651367188	2	606.371972	1210.72939	0.060157	3.6478E-05	-2.1833	-0.0013239	-2.1231	-0.0012874	606.3705142520195	112.79	0.17229	112.79	112.72	112.89	0					31	20	2	0	0	0	0.41673	1	29307	29307		0.40072	0.40072	1	43249	+		23494	16638	13306	13307	29644	29644					0.13245604997769078
LKPQNRKVD	9	Unmodified	_LKPQNRKVD_					0	0	0		ENSG00000198704|ENST00000361902|GPX6	ENSG00000198704|ENST00000361902|GPX6	ENSG00000198704|ENST00000361902|GPX6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3250122070312	2	549.324922	1096.63529	0.2618	0.00014381	-1.1248	-0.00061788	-0.863	-0.00047407	549.3252572684625	25.579	0.4385	25.579	25.384	25.823	0					34	14	3	0	0	0	0.25706	1	4105	4105		6.7232	0.51738	1	253620			23495	8104	13307	13308	29645	29645					0.0908392549151813
LKPQNRKVD	9	Unmodified	_LKPQNRKVD_					0	0	0		ENSG00000198704|ENST00000361902|GPX6	ENSG00000198704|ENST00000361902|GPX6	ENSG00000198704|ENST00000361902|GPX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3265991210938	2	549.324922	1096.63529	0.18935	0.00010401	-0.89521	-0.00049176	-0.70586	-0.00038775	549.3254250049704	25.638	0.51984	25.582	25.365	25.885	-0.055931					35	17	3	0	0	0	0.31038	1	4165	4165		7.2892	0.56607	1	212910			23496	8104	13307	13308	29646	29646					0.0908392549151813
LKPRKHRY	8	Unmodified	_LKPRKHRY_					0	0	0			REV__nc|ENSG00000173681|A2AJT9-3|BCLAF3	REV__nc|ENSG00000173681|A2AJT9-3|BCLAF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.79931640625	2	549.338167	1096.66178	0.15058	8.2722E-05	-1.5346	-0.00084301	-1.384	-0.00076029	549.3373194672226	14.887	0.28165	14.823	14.674	14.955	-0.064414					15	9	2	0	0	0	0.344	1	898	898		0.69038	0	1	43376	+		23497	17797	13308	13309	29647	29647					0.11731659173506159
LKPSKVGFFFL	11	Unmodified	_LKPSKVGFFFL_					0	0	0		ENST00000548245.5_1_12:95650947-95652045:+|nuORF;ENST00000436874.5_1_12:95650947-95656754:+|nuORF	ENST00000548245.5_1_12:95650947-95652045:+|nuORF	ENST00000548245.5_1_12:95650947-95652045:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8827514648438	2	641.881542	1281.74853	0.63609	0.00040829	0.95289	0.00061164	1.589	0.0010199	641.8824013892053	91.359	0.592	91.359	91.193	91.785	0.00046539					72	39	3	0	0	0	0.47429	1	24334	24334		1.4819	0	1	278010			23498	10527	13309	13310	29648	29648					0.11892600884698368
LKQAEIWLHK	10	Unmodified	_LKQAEIWLHK_					0	0	0		ENSG00000123297|ENST00000652027|TSFM;nc|ENSG00000123297|P43897-2|TSFM;nc|ENSG00000123297|P43897-3|TSFM;nc|ENSG00000123297|P43897-4|TSFM	ENSG00000123297|ENST00000652027|TSFM	ENSG00000123297|ENST00000652027|TSFM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3695068359375	2	633.371872	1264.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.739	1	98.79	98.29	99.29	0.050888								0	0	0	0.37157	1	26432	26432		5.7319	0.83484	1				23499	3094	13310	13311	29649	29649					0.1074164459378153
LKQFRRQRH	9	Unmodified	_LKQFRRQRH_					0	0	0			REV__ENST00000479859.1_1_2:24199858-24199963:+|nuORF	REV__ENST00000479859.1_1_2:24199858-24199963:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.8756713867188	2	634.875979	1267.73741	0.27839	0.00017674	-0.97631	-0.00061984	-0.69793	-0.0004431	634.875384679991	18.391	0.46626	18.274	18.065	18.531	-0.11739					32	15	3	0	0	0	0.33018	1	1912	1912		4.3292	1.334	1	124890	+		23500	21081	13311	13312	29650	29650					0.114246363537859
LKQGRARG	8	Unmodified	_LKQGRARG_					0	0	0			REV__ENST00000443967.5_1_5:175716823-175716901:+|nuORF	REV__ENST00000443967.5_1_5:175716823-175716901:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.2725830078125	2	443.272493	884.530432	0.40774	0.00018074	-0.15749	-6.9813E-05	0.25025	0.00011093	443.27237097457316	77.375	1.9004	77.43	76.833	78.733	0.055412					170	68	5	0	0	0	0.45169	1	19949	19949		5.2307	0	1	6461700	+		23501	21066	13312	13313	29651	29651					0.08354848805595338
LKQKGIVIS	9	Unmodified	_LKQKGIVIS_					0	0	0		ENSG00000169299|ENST00000381967|PGM2	ENSG00000169299|ENST00000381967|PGM2	ENSG00000169299|ENST00000381967|PGM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.8132019042969	2	493.32386	984.633166	0.3591	0.00017715	0.044729	2.2066E-05	0.40383	0.00019922	493.3239132630626	62.054	1.1461	62.054	61.784	62.93	0					123	42	4	0	0	0	0.25314	1	15334	15334		15.847	4.2069	1	6225600			23502	6348	13313	13314	29652	29652					0.14023496753691234
LKQKGIVIS	9	Unmodified	_LKQKGIVIS_					0	0	0		ENSG00000169299|ENST00000381967|PGM2	ENSG00000169299|ENST00000381967|PGM2	ENSG00000169299|ENST00000381967|PGM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.8130798339844	2	493.32386	984.633166	0.1149	5.6684E-05	0.29005	0.00014309	0.40495	0.00019977	493.32405426737563	61.965	1.1679	62.062	61.79	62.958	0.096985					122	42	5	0	0	0	0.25314	1	15316	15316		15.847	3.3156	1	6245500			23503	6348	13313	13314	29653	29653					0.14023496753691234
LKQMKRFI	8	Unmodified	_LKQMKRFI_					0	0	0		ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7964477539062	2	532.325879	1062.63721	0.061578	3.278E-05	1.6128	0.00085855	1.6744	0.00089133	532.3265816281262	13.035	0.19724	12.968	12.905	13.102	-0.067495					8	6	2	0	0	0	0.34353	1	298	298		4.756	0	1	21190			23504	11239	13314	13315	29654	29654					0.10839262975764541
LKQMKRFI	8	Unmodified	_LKQMKRFI_					0	0	0		ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	532.325879	1062.63721	0.15218	8.1008E-05	3.0223	0.0016088	3.1745	0.0016898	532.3276754410639	12.984	0.24317	12.984	12.847	13.09	0	-0.0087302	0.00059881	NaN	4.756	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22956			23505	11239	13314	13315							0.10839262975764541
LKQMKRFI	8	Unmodified	_LKQMKRFI_					0	0	0		ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	532.325879	1062.63721	0.031408	1.6719E-05	2.4486	0.0013034	2.48	0.0013202	532.3269229061221	13.126	0.23452	13.027	12.894	13.129	-0.099291	0.033768	-1.198E-05	NaN	4.756	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22347			23506	11239	13314	13315							0.10839262975764541
LKQMKRFIE	9	Unmodified	_LKQMKRFIE_					0	0	0		ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	ENST00000496637.6_1_10:28342996-28348461:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.8486328125	2	596.847176	1191.6798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.806	1	91.896	91.396	92.396	0.090668								0	0	0	0.25631	1	24385	24385		4.3292	0.73274	1				23507	11239	13315	13316	29655	29655					0.09162613313355905
LKQRQKHI	8	Unmodified	_LKQRQKHI_					0	0	0		ENSG00000183378|ENST00000533663|OVCH2;nc|ENSG00000183378|Q7RTZ1|OVCH2	ENSG00000183378|ENST00000533663|OVCH2	ENSG00000183378|ENST00000533663|OVCH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8302001953125	2	525.830175	1049.6458	0.48476	0.0002549	-0.30666	-0.00016125	0.1781	9.3649E-05	525.8299751198689	17.07	0.52831	17.07	16.867	17.396	0					31	18	2	0	0	0	0.45169	1	1556	1556		5.2307	0	1	141130			23508	7364	13316	13317	29656	29656					0.12295952936597132
LKQRVIQYR	9	Unmodified	_LKQRVIQYR_					0	0	0		ENST00000391875.6_2_1:224505599-224517865:-|nuORF	ENST00000391875.6_2_1:224505599-224517865:-|nuORF	ENST00000391875.6_2_1:224505599-224517865:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3695068359375	2	602.369664	1202.72478	-0.080137	-4.8272E-05	0.049525	2.9832E-05	-0.030612	-1.8439E-05	602.3697245664678	12.542	0.20277	12.474	12.377	12.579	-0.06806					14	6	3	0	0	0	0.35563	1	163	163		0.52476	0	1	47255			23509	10027	13317	13318	29657	29657					0.13152180170868633
LKREHSLIK	9	Unmodified	_LKREHSLIK_					0	0	0		ENSG00000169223|ENST00000303127|LMAN2	ENSG00000169223|ENST00000303127|LMAN2	ENSG00000169223|ENST00000303127|LMAN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.7969970703125	2	562.35094	1122.68733	0.40294	0.00022659	-0.27541	-0.00015488	0.12753	7.1716E-05	562.3507666288695	39.702	0.47181	39.794	39.548	40.02	0.09267					34	16	3	0	0	0	0.25527	1	8345	8345		8.7454	1.1365	1	285020			23510	6337	13318	13319	29658	29658					0.13089088905257995
LKRFDEWKELK	11	Unmodified	_LKRFDEWKELK_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.94879150390625	3	497.948793	1490.82455	0.20434	0.00010175	-0.1995	-9.9339E-05	0.0048467	2.4134E-06	497.94860571870174	39.855	1.0171	39.855	39.644	40.662	0					76	36	4	0	0	0	0.39698	2	8441	8441;8491		11.631	3.7853	1	802990			23511	2872	13319	13320	29659;29660	29659					0.09876952994159183
LKRFDEWKELK	11	Unmodified	_LKRFDEWKELK_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.2826843261719	3	497.948793	1490.82455	0.33924	0.00016892	-0.56877	-0.00028322	-0.22953	-0.0001143	497.9485301387495	39.67	0.57907	39.769	39.511	40.09	0.099407					58	20	4	0	0	0	0.32912	1	8375	8375		11.631	3.7853	1	869950			23512	2872	13319	13320	29661	29661					0.09876952994159183
LKRHMKTHM	9	Unmodified	_LKRHMKTHM_					0	0	0		nc|ENSG00000127152|Q9C0K0-2|BCL11B;ENSG00000127152|ENST00000357195|BCL11B;nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;ENSG00000119866|ENST00000642384|BCL11A	nc|ENSG00000127152|Q9C0K0-2|BCL11B	nc|ENSG00000127152|Q9C0K0-2|BCL11B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.3233642578125	2	591.323345	1180.63214	0.19888	0.0001176	-0.29831	-0.0001764	-0.099426	-5.8793E-05	591.3230251173013	19.223	0.70339	19.223	18.952	19.655	0					78	24	4	0	0	0	0.29176	1	2231	2231		10.074	0.52995	1	593620			23513	3307	13320	13321	29662	29662					0.04904635841489835
LKRHRPYRTFF	11	Unmodified	_LKRHRPYRTFF_					0	0	0			REV__ENSG00000100350|ENST00000397224|FOXRED2	REV__ENSG00000100350|ENST00000397224|FOXRED2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.30078125	3	507.624755	1519.85244	0.23983	0.00012175	-1.0914	-0.00055401	-0.85154	-0.00043226	507.6241486466509	47.137	0.41951	47.189	47.014	47.433	0.052574					27	15	2	0	0	0	0.3331	1	10638	10638		1.0136	0.38675	1	305830	+		23514	14186	13321	13322	29663	29663					0.11330320764886892
LKRIDPQL	8	Unmodified	_LKRIDPQL_					0	0	0			REV__ENST00000412878.2_1_10:53079965-53080385:+|nuORF	REV__ENST00000412878.2_1_10:53079965-53080385:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.26373291015625	2	491.805834	981.597115	0.2935	0.00014434	0.72614	0.00035712	1.0196	0.00050146	491.8063872249623	59.182	0.27304	59.182	59.024	59.297	0					11	9	2	0	0	0	0.30795	1	14391	14391		30.637	16.73	1	127160	+		23515	20785	13322	13323	29664	29664					0.10558039576847023
LKRIQIWK	8	Unmodified	_LKRIQIWK_					0	0	0		ENST00000555641.1_1_12:57499966-57502061:-|nuORF;ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.850341796875	2	542.853119	1083.69168	0.18209	9.8846E-05	-3.022	-0.0016405	-2.8399	-0.0015416	542.8514047478318	14.023	0.23289	13.918	13.816	14.049	-0.10466					12	7	2	0	0	0	0.4419	1	610	610		8.5933	0	1	118740			23516	6128	13323	13324	29665	29665					0.1531859811882441
LKRPHVDEF	9	Unmodified	_LKRPHVDEF_					0	0	0		ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENSG00000144677|ENST00000273179|CTDSPL	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.7999877929688	2	570.811648	1139.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.624	1	75.624	75.124	76.124	0								0	0	0	0.23091	1	19439	19439		12.532	0.89125	1				23517	4594	13324	13325	29666	29666					0.0445223660017291
LKRPHVDEF	9	Unmodified	_LKRPHVDEF_					0	0	0		ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENSG00000144677|ENST00000273179|CTDSPL	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.800048828125	2	570.811648	1139.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.68	1	75.648	75.148	76.148	-0.031487								0	0	0	0.22065	1	19441	19441		15.847	2.3393	1				23518	4594	13324	13325	29667	29667					0.0445223660017291
LKRPPPPTRFP	11	Unmodified	_LKRPPPPTRFP_					0	0	0		ENST00000339310.7_1_10:103343400-103347291:-|nuORF	ENST00000339310.7_1_10:103343400-103347291:-|nuORF	ENST00000339310.7_1_10:103343400-103347291:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.21038818359375	3	435.931185	1304.77173	0.020805	9.0697E-06	0.34329	0.00014965	0.3641	0.00015872	435.9313095019386	21.397	0.54679	21.397	21.026	21.573	0					32	18	2	0	0	0	0.33339	1	2742	2742		1.0136	0.55906	1	75104			23519	9509	13325	13326	29668	29668					0.13153039721987625
LKRQLNHAI	9	Unmodified	_LKRQLNHAI_					0	0	0			REV__ENSG00000120262|ENST00000239374|CCDC170	REV__ENSG00000120262|ENST00000239374|CCDC170	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.83544921875	2	546.835457	1091.65636	0.52066	0.00028472	-0.48846	-0.00026711	0.032201	1.7609E-05	546.8350844686244	24.039	0.79754	23.966	23.7	24.498	-0.072559					46	26	3	0	0	0	0.33276	1	3671	3671		3.9444	0.3479	1	49396	+		23520	15079	13326	13327	29669	29669					0.11419935591038666
LKRRPTGSI	9	Unmodified	_LKRRPTGSI_					0	0	0			REV__ENSG00000145041|ENST00000684031|DCAF1	REV__ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.321533203125	2	514.322183	1026.62981	-1.1372	-0.0005849	0.058385	3.0029E-05	-1.0788	-0.00055487	514.3220891941471	34.792	0.58814	34.792	34.556	35.144	0					40	20	3	0	0	0	0.18803	1	6888	6888		25.399	1.3787	1	428750	+		23521	16275	13327	13328	29670	29670					0.11756246699701478
LKRSCAKIVY	10	Unmodified	_LKRSCAKIVY_					0	0	0			REV__ENSG00000109111|ENST00000314616|SUPT6H	REV__ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.8469848632812	2	590.847176	1179.6798	0.25978	0.00015349	-0.6165	-0.00036426	-0.35672	-0.00021076	590.8466571214335	57.627	0.96223	57.61	57.285	58.247	-0.0172					61	35	2	0	0	0	0.34795	1	13936	13936		13.042	0.51092	1	2864700	+		23522	14629	13328	13329	29671	29671					0.09714613313326481
LKRSCAKIVY	10	Unmodified	_LKRSCAKIVY_					0	0	0			REV__ENSG00000109111|ENST00000314616|SUPT6H	REV__ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	590.847176	1179.6798	0.47195	0.00027885	-0.76154	-0.00044995	-0.28959	-0.0001711	590.8464371000964	57.493	0.96873	57.493	57.19	58.159	0	-0.022131	-4.8856E-05	NaN	13.042	60	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2087400	+		23523	14629	13328	13329							0.09714613313326481
LKRSCAKIVY	10	Unmodified	_LKRSCAKIVY_					0	0	0			REV__ENSG00000109111|ENST00000314616|SUPT6H	REV__ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	590.847176	1179.6798	0.39753	0.00023488	-0.85139	-0.00050304	-0.45386	-0.00026816	590.8464455657434	57.356	0.97965	57.442	57.132	58.112	0.085617	-0.072888	-0.00015503	NaN	13.042	54	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2673600	+		23524	14629	13328	13329							0.09714613313326481
LKRSIPLCLII	11	Unmodified	_LKRSIPLCLII_					0	0	0		ENST00000450966.5_1_2:234474130-234474196:-|nuORF	ENST00000450966.5_1_2:234474130-234474196:-|nuORF	ENST00000450966.5_1_2:234474130-234474196:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3779907226562	2	634.909776	1267.805	-0.067086	-4.2594E-05	-1.1395	-0.0007235	-1.2066	-0.0007661	635.4100726413532	103.38	0.062256	103.38	103.35	103.41	0					11	9	2	0	0	0	0.33255	1	27476	27476		2.9952	1.5133	1	7560200			23525	10645	13329	13330	29672	29672					0.18180905449730744
LKSHLGRARTV	11	Unmodified	_LKSHLGRARTV_					0	0	0			REV__ENSG00000110921|ENST00000228510|MVK	REV__ENSG00000110921|ENST00000228510|MVK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.566650390625	3	413.254439	1236.74149	0.20041	8.2819E-05	-0.70379	-0.00029084	-0.50338	-0.00020802	413.25404797971385	27.063	0.66706	27.052	26.651	27.318	-0.01156					48	23	3	0	0	0	0.33263	1	4564	4564		2.084	0	1	312710	+		23526	14693	13330	13331	29673	29673					0.13258681056822752
LKSINALEK	9	Unmodified	_LKSINALEK_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.80255126953125	2	508.310949	1014.60735	0.065766	3.3429E-05	0.38956	0.00019802	0.45533	0.00023145	508.31116265249597	28.353	0.4579	28.353	28.153	28.611	0					22	15	2	0	0	0	0.23749	1	4876	4876		20.415	3.3016	1	134130	+		23527	16298	13331	13332	29674	29674					0.10062602511413843
LKSNVQANL	9	Unmodified	_LKSNVQANL_					0	0	0		ENSG00000144401|ENST00000411432|METTL21A	ENSG00000144401|ENST00000411432|METTL21A	ENSG00000144401|ENST00000411432|METTL21A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2644958496094	2	493.785099	985.555644	0.057663	2.8473E-05	0.0076439	3.7744E-06	0.065307	3.2248E-05	493.78504529549883	13.462	0.32431	13.462	13.336	13.66	0					17	10	2	0	0	0	0.26168	1	465	465		1.8442	1.0506	1	69157			23528	4581	13332	13333	29675	29675					0.062288588175078985
LKSRLLGYVAL	11	Unmodified	_LKSRLLGYVAL_					0	0	0			REV__ENSG00000184574|ENST00000329858|LPAR5	REV__ENSG00000184574|ENST00000329858|LPAR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.8899536132812	2	616.889898	1231.76524	0.18422	0.00011364	-0.53557	-0.00033039	-0.35135	-0.00021674	616.8899238390816	57.946	0.44331	58.032	57.865	58.308	0.085617					24	15	2	0	0	0	0.43149	1	14024	14024		7.1017	0	1	331430	+		23529	18322	13333	13334	29676	29676					0.15863101770673893
LKSVTRETSEK	11	Unmodified	_LKSVTRETSEK_					0	0	0			REV__ENSG00000090889|ENST00000374403|KIF4A	REV__ENSG00000090889|ENST00000374403|KIF4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.26434326171875	3	426.573503	1276.69868	0.03977	1.6965E-05	0.79623	0.00033965	0.836	0.00035661	426.57385154232213	17.077	0.35195	17.017	16.859	17.211	-0.060429					19	12	2	0	0	0	0.33303	1	1513	1513		2.4348	0.18206	1	32136	+		23530	14052	13334	13335	29677	29677					0.07139821418059
LKSWDPKL	8	Unmodified	_LKSWDPKL_					0	0	0			REV__ENST00000413787.1_3_X:152958525-152959718:+|nuORF	REV__ENST00000413787.1_3_X:152958525-152959718:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.787353515625	2	493.78711	985.559667	0.47089	0.00023252	0.05898	2.9124E-05	0.52987	0.00026164	493.7871777936346	49.594	1.2794	49.594	48.721	50.001	0					84	46	2	0	0	0	0.29394	1	11414	11414		29.082	4.4077	1	1005500	+		23531	15483	13335	13336	29678	29678					0.06630948311226348
LKSWDPKL	8	Unmodified	_LKSWDPKL_					0	0	0			REV__ENST00000413787.1_3_X:152958525-152959718:+|nuORF	REV__ENST00000413787.1_3_X:152958525-152959718:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7877197265625	2	493.78711	985.559667	0.75256	0.00037161	-0.28074	-0.00013863	0.47182	0.00023298	493.78697927714376	50.927	1.6883	50.973	49.933	51.621	0.046574					136	62	3	0	0	0	0.1951	1	11853	11853		43.858	3.901	1	1432900	+		23532	15483	13335	13336	29679	29679					0.06630948311226348
LKSWDPKL	8	Unmodified	_LKSWDPKL_					0	0	0			REV__ENST00000413787.1_3_X:152958525-152959718:+|nuORF	REV__ENST00000413787.1_3_X:152958525-152959718:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.78711	985.559667	0.28866	0.00014254	-0.45261	-0.0002235	-0.16395	-8.0956E-05	493.7871430422807	49.543	1.3654	49.575	48.71	50.075	0.032043	-0.0094787	-0.00038076	NaN	29.082	127	49	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1057900	+		23533	15483	13335	13336							0.06630948311226348
LKTESLIIN	9	Unmodified	_LKTESLIIN_					0	0	0			REV__ENSG00000109066|ENST00000335464|TMEM104	REV__ENSG00000109066|ENST00000335464|TMEM104	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.8004760742188	2	515.810782	1029.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.702	1	57.702	57.202	58.202	0								0	0	0	0.2362	1	13942	13942		10.824	0.75	1		+		23534	14625	13336	13337	29680	29680					0.09339182791586609
LKTGENLRP	9	Unmodified	_LKTGENLRP_					0	0	0		ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1;ENST00000492173.1_1_1:10718563-10720675:-|nuORF	ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2981567382812	2	514.298373	1026.58219	0.16277	8.3711E-05	-0.0058121	-2.9892E-06	0.15696	8.0722E-05	514.2981042619774	19.408	1.0036	19.292	18.977	19.981	-0.11592					81	34	4	0	0	0	0.29176	1	2264	2264		10.074	0	1	338320			23535	3529	13337	13338	29681	29681					0.06996547708831713
LKTGQRLHGGG	11	Unmodified	_LKTGQRLHGGG_					0	0	0		ENST00000064778.8_1_11:73116296-73116359:-|nuORF	ENST00000064778.8_1_11:73116296-73116359:-|nuORF	ENST00000064778.8_1_11:73116296-73116359:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3203125	2	562.320171	1122.62579	0.1413	7.9456E-05	-0.84389	-0.00047454	-0.70259	-0.00039508	562.3198321540697	19.299	0.6404	19.243	18.876	19.516	-0.055691					37	21	2	0	0	0	0.47649	1	2221	2221		1.1933	0	1	66817			23536	8775	13338	13339	29682	29682					0.06938157205991047
LKTLTLMIF	9	Unmodified	_LKTLTLMIF_					0	0	0		nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3302001953125	2	540.330296	1078.64604	0.4138	0.00022359	-0.30716	-0.00016597	0.10665	5.7625E-05	540.3299975168404	76.344	2.4263	76.344	75.154	77.58	0					260	88	5	0	0	0	0.32733	1	19661	19661		4.756	4.756	1	3193300			23537	12871	13339	13340	29683	29683					0.1098619182157563
LKTLTLMIF	9	Unmodified	_LKTLTLMIF_					0	0	0		nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3304443359375	2	540.330296	1078.64604	0.54392	0.00029389	0.36602	0.00019777	0.90994	0.00049167	540.3304740413305	80.895	0.67496	80.868	80.527	81.202	-0.026825					68	27	3	0	0	0	0.30166	1	20964	20964		8.5933	8.5933	1	870990			23538	12871	13339	13340	29684	29684					0.1098619182157563
LKTLTLMIF	9	Unmodified	_LKTLTLMIF_					0	0	0		nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	540.330296	1078.64604	0.45447	0.00024556	0.51414	0.00027781	0.96861	0.00052337	540.3305287767353	80.854	0.71086	80.854	80.569	81.28	0	-0.013387	3.4739E-06	NaN	8.5933	88	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	902950			23539	12871	13339	13340							0.1098619182157563
LKTLTLMIF	9	Unmodified	_LKTLTLMIF_					0	0	0		nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-3|IST1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	540.330296	1078.64604	0.54392	0.00029389	0.36602	0.00019777	0.90994	0.00049167	540.3304740413305	80.895	0.67496	80.868	80.527	81.202	-0.026825	0.00093663	-0.0001566	NaN	8.5933	68	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	870990			23540	12871	13339	13340							0.1098619182157563
LKTMYTRIIV	10	Unmodified	_LKTMYTRIIV_					0	0	0		ENST00000303536.8_1_2:54531976-54532021:+|nuORF	ENST00000303536.8_1_2:54531976-54532021:+|nuORF	ENST00000303536.8_1_2:54531976-54532021:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8693237304688	2	619.370484	1236.72641	0.37078	0.00022965	-0.98605	-0.00061073	-0.61527	-0.00038108	619.370569418945	91.757	1.4647	91.757	91.303	92.768	0.00046539					206	95	3	0	0	0	0.40262	1	24284	24284		2.9952	0.26005	1	1022300			23541	9248	13340	13341	29685	29685					0.11752053144618912
LKVACAEEWQE	11	Unmodified	_LKVACAEEWQE_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.5793151855469	3	435.876306	1304.60709	-0.070017	-3.0519E-05	1.6752	0.00073018	1.6052	0.00069966	435.87710395268533	22.288	0.81122	22.187	21.716	22.527	-0.10034					45	29	2	0	0	0	0.33169	1	3123	3123		6.2344	6.2344	1	102850			23542	4483	13341	13342	29686	29686					-0.03303185270760878
LKVCAFLLF	9	Unmodified	_LKVCAFLLF_					0	0	0		ENST00000525312.1_1_11:12886306-12886516:+|nuORF	ENST00000525312.1_1_11:12886306-12886516:+|nuORF	ENST00000525312.1_1_11:12886306-12886516:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3118286132812	2	527.311906	1052.60926	0.093579	4.9345E-05	-0.38723	-0.00020419	-0.29366	-0.00015485	527.3116608859186	14.142	0.25801	14.038	13.873	14.131	-0.10466					15	8	2	0	0	0	0.32733	1	653	653		4.756	0.81161	1	142260			23543	11537	13342	13343	29687	29687					0.08505939995666267
LKVCAFLLF	9	Unmodified	_LKVCAFLLF_					0	0	0		ENST00000525312.1_1_11:12886306-12886516:+|nuORF	ENST00000525312.1_1_11:12886306-12886516:+|nuORF	ENST00000525312.1_1_11:12886306-12886516:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	527.311906	1052.60926	0.18798	9.9123E-05	-0.45482	-0.00023983	-0.26684	-0.00014071	527.3116848319617	14.035	0.23561	14.035	13.902	14.138	0	0.0033874	-3.5939E-05	NaN	4.756	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103560			23544	11537	13342	13343							0.08505939995666267
LKVCAFLLF	9	Unmodified	_LKVCAFLLF_					0	0	0		ENST00000525312.1_1_11:12886306-12886516:+|nuORF	ENST00000525312.1_1_11:12886306-12886516:+|nuORF	ENST00000525312.1_1_11:12886306-12886516:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	527.311906	1052.60926	0.093579	4.9345E-05	-0.38723	-0.00020419	-0.29366	-0.00015485	527.3116608859186	14.142	0.25801	14.038	13.873	14.131	-0.10466	0.0057472	3.5339E-05	NaN	4.756	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142260			23545	11537	13342	13343							0.08505939995666267
LKVCAFLLF	9	Unmodified	_LKVCAFLLF_					0	0	0		ENST00000525312.1_1_11:12886306-12886516:+|nuORF	ENST00000525312.1_1_11:12886306-12886516:+|nuORF	ENST00000525312.1_1_11:12886306-12886516:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	527.311906	1052.60926	0.15051	7.9365E-05	-0.4493	-0.00023692	-0.29879	-0.00015756	527.3116368864123	14.089	0.23491	14.023	13.889	14.124	-0.066068	-0.0091346	-3.0119E-05	NaN	4.756	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101610			23546	11537	13342	13343							0.08505939995666267
LKVCAQAQWLW	11	Unmodified	_LKVCAQAQWLW_					0	0	0			REV__ENST00000513935.1_1_4:906456-925975:-|nuORF	REV__ENST00000513935.1_1_4:906456-925975:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.7403869628906	3	449.241031	1344.70126	-0.026205	-1.1773E-05	-0.81935	-0.00036809	-0.84556	-0.00037986	449.2407440737083	16.887	0.41807	16.773	16.611	17.029	-0.11434					23	14	2	0	0	0	0.33296	1	1532	1532		2.6312	0.19645	1	68258	+		23547	21831	13343	13344	29688	29688					0.042699983420561693
LKVCAQAQWLW	11	Unmodified	_LKVCAQAQWLW_					0	0	0			REV__ENST00000513935.1_1_4:906456-925975:-|nuORF	REV__ENST00000513935.1_1_4:906456-925975:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	449.241031	1344.70126	0.13964	6.2733E-05	-0.76344	-0.00034297	-0.6238	-0.00028024	449.2406203813962	16.751	0.37617	16.751	16.491	16.867	0	0.018307	0.00017701	NaN	2.6312	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99350	+		23548	21831	13343	13344							0.042699983420561693
LKVCAQAQWLW	11	Unmodified	_LKVCAQAQWLW_					0	0	0			REV__ENST00000513935.1_1_4:906456-925975:-|nuORF	REV__ENST00000513935.1_1_4:906456-925975:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	449.241031	1344.70126	0.23231	0.00010436	-0.9985	-0.00044857	-0.76619	-0.00034421	449.5746523447881	16.737	0.42042	16.674	16.414	16.834	-0.062534	-0.058374	-0.00013979	NaN	2.6312	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76179	+		23549	21831	13343	13344							0.042699983420561693
LKVGIKNQEK	10	Unmodified	_LKVGIKNQEK_					0	0	0			REV__ENSG00000147654|ENST00000337573|EBAG9	REV__ENSG00000147654|ENST00000337573|EBAG9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.8501586914062	2	578.856055	1155.69756	0.37046	0.00021444	-0.68792	-0.0003982	-0.31746	-0.00018376	578.8552628794213	38.273	0.98356	38.364	38.042	39.026	0.090881					93	35	4	0	0	0	0.12791	1	8123	8123		41.956	6.3433	1	5283100	+		23550	16400	13344	13345	29689	29689					0.12593651839847553
LKVKESNVKN	10	Unmodified	_LKVKESNVKN_					0	0	0			REV__nc|ENSG00000204179|Q4JDL3-15|PTPN20	REV__nc|ENSG00000204179|Q4JDL3-15|PTPN20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.8446655273438	2	579.845687	1157.67682	0.20481	0.00011876	-1.7756	-0.0010296	-1.5708	-0.00091084	579.8443690280482	92.444	0.64767	92.444	92.249	92.897	0					66	49	2	0	0	0	0.40106	1	24644	24644		3.2813	0.28607	1	150140	+		23551	18924	13345	13346	29690	29690					0.10429061460172306
LKVPERGRK	9	Unmodified	_LKVPERGRK_					0	0	0		ENST00000464100.1_1_6:32798343-32798499:-|nuORF	ENST00000464100.1_1_6:32798343-32798499:-|nuORF	ENST00000464100.1_1_6:32798343-32798499:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.8432006835938	2	541.843282	1081.67201	0.2012	0.00010902	-0.25049	-0.00013573	-0.049295	-2.671E-05	541.8430670639191	12.789	0.37357	12.69	12.521	12.894	-0.099291					19	12	2	0	0	0	0.33508	1	246	246		3.5965	0	1	79171			23552	10780	13346	13347	29691	29691					0.1344422210806897
LKVPLARSLQ	10	Unmodified	_LKVPLARSLQ_					0	0	0		nc|ENSG00000196233|Q96JN0-2|LCOR;nc|ENSG00000196233|Q96JN0|LCOR	nc|ENSG00000196233|Q96JN0-2|LCOR	nc|ENSG00000196233|Q96JN0-2|LCOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.2498168945312	2	562.861141	1123.70773	0.43596	0.00024538	-0.79343	-0.00044659	-0.35748	-0.00020121	562.8605671975492	43.588	0.30753	43.666	43.483	43.79	0.077515					12	10	2	0	0	0	0.31323	1	9581	9581		10.8	0	1	142890			23553	12892	13347	13348	29692	29692					0.15082259565087952
LKVSFMFLI	9	Unmodified	_LKVSFMFLI_					0	0	0		ENST00000553707.1_1_14:52465195-52466583:+|nuORF	ENST00000553707.1_1_14:52465195-52466583:+|nuORF	ENST00000553707.1_1_14:52465195-52466583:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3251953125	2	549.325014	1096.63547	0.1213	6.6631E-05	-0.047372	-2.6022E-05	0.073924	4.0608E-05	549.3248091966835	15.246	0.42528	15.246	15.072	15.498	0					30	14	3	0	0	0	0.29176	1	966	966		10.074	0.6908	1	110020			23554	11822	13348	13349	29693	29693					0.0910220916716753
LKVYELHRKL	10	Unmodified	_LKVYELHRKL_					0	0	0			REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8973999023438	2	649.900797	1297.78704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.745	1	93.745	93.245	94.245	0								0	0	0	0.38198	1	24979	24979		0.35063	0.35063	1		+		23555	18473	13349	13350	29694	29694					0.15005906519195378
LKWWWRWLRR	10	Unmodified	_LKWWWRWLRR_					0	0	0			REV__chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	REV__chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.6400146484375	3	529.305357	1584.89424	0.43633	0.00023095	0.53722	0.00028436	0.97356	0.00051531	529.3057048991799	111.59	0.52527	111.6	111.45	111.98	0.01152					130	66	3	0	0	0	0.41892	1	29047	29047		0	0	1	235430	+		23556	13177	13350	13351	29695	29695					0.12518921244100056
LKWWWRWLRR	10	Unmodified	_LKWWWRWLRR_					0	0	0			REV__chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	REV__chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3062744140625	3	529.305357	1584.89424	0.43633	0.00023095	0.53722	0.00028436	0.97356	0.00051531	529.3057048991799	111.59	0.52527	111.6	111.45	111.98	0.01152					130	66	3	0	0	0	0.32176	1	29107	29107		0	0	1	235430	+		23557	13177	13350	13351	29696	29696					0.12518921244100056
LKYKHLAF	8	Unmodified	_LKYKHLAF_					0	0	0		ENSG00000136270|ENST00000258770|TBRG4;nc|ENSG00000136270|Q969Z0-2|TBRG4;ENST00000488222.5_1_7:45142883-45145249:-|nuORF	ENSG00000136270|ENST00000258770|TBRG4	ENSG00000136270|ENST00000258770|TBRG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.77093505859375	2	510.30547	1018.59639	-0.036645	-1.87E-05	1.0166	0.00051876	0.97991	0.00050006	510.3061235061348	12.801	0.17938	12.702	12.578	12.757	-0.099291					8	5	2	0	0	0	0.34434	1	230	230		0.79363	0	1	8165.5			23558	3964	13351	13352	29697	29697					0.08783244927803935
LKYLQRERL	9	Unmodified	_LKYLQRERL_					0	0	0			REV__nc|ENSG00000099954|Q9BXF3-2|CECR2	REV__nc|ENSG00000099954|Q9BXF3-2|CECR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.91583251953125	3	406.915423	1217.72444	0.1166	4.7446E-05	0.10433	4.2454E-05	0.22093	8.99E-05	406.9155603471023	34.064	1.738	34.064	33.728	35.466	0					187	62	6	0	0	0	0.21447	1	6626	6626		20.581	1.8597	1	6375300	+		23559	14144	13352	13353	29698	29698					0.1242876045103003
LKYLQRERL	9	Unmodified	_LKYLQRERL_					0	0	0			REV__nc|ENSG00000099954|Q9BXF3-2|CECR2	REV__nc|ENSG00000099954|Q9BXF3-2|CECR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.9157409667969	3	406.915423	1217.72444	0.38994	0.00015867	-0.07728	-3.1446E-05	0.31266	0.00012722	406.9154783957179	33.863	1.6068	33.93	33.566	35.173	0.06636					176	57	5	0	0	0	0.14786	1	6565	6565		23.801	2.0016	1	5514600	+		23560	14144	13352	13353	29699	29699					0.1242876045103003
LKYLQRERL	9	Unmodified	_LKYLQRERL_					0	0	0			REV__nc|ENSG00000099954|Q9BXF3-2|CECR2	REV__nc|ENSG00000099954|Q9BXF3-2|CECR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9158020019531	3	406.915423	1217.72444	-0.17919	-7.2916E-05	0.27396	0.00011148	0.094763	3.856E-05	406.91563191365	33.893	1.5232	33.96	33.633	35.156	0.0667					168	54	5	0	0	0	0.21447	1	6572	6572		20.581	1.8597	1	6116400	+		23561	14144	13352	13353	29700	29700					0.1242876045103003
LKYRQGRTII	10	Unmodified	_LKYRQGRTII_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.24334716796875	3	416.59094	1246.75099	0.26106	0.00010876	0.58398	0.00024328	0.84504	0.00035204	416.5910973033	35.517	0.33462	35.599	35.488	35.823	0.082355					20	11	2	0	0	0	0.3179	1	7156	7156		8.9762	7.234	1	283330			23562	5917	13353	13354	29701	29701					0.13748449342369895
LLAAIAGEL	9	Unmodified	_LLAAIAGEL_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10;ENST00000463024.1_1_6:43403548-43405752:+|nuORF	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.251708984375	2	435.768386	869.522219	0.010188	4.4394E-06	-0.46839	-0.00020411	-0.4582	-0.00019967	435.76810472087004	71.986	0.5255	71.986	71.69	72.215	0					32	18	2	0	0	0	0.22596	1	18324	18324		21.747	6.9084	1	194670			23563	3168	13354	13355	29702	29702					0.08223857045629757
LLAAQKVI	8	Unmodified	_LLAAQKVI_					0	0	0		nc|ENSG00000082212|P23368-2|ME2;ENSG00000082212|ENST00000321341|ME2	nc|ENSG00000082212|P23368-2|ME2	nc|ENSG00000082212|P23368-2|ME2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2866516113281	2	428.286746	854.558939	0.30271	0.00012965	-0.41327	-0.000177	-0.11056	-4.7351E-05	428.28641108326696	55.788	0.64754	55.859	55.565	56.213	0.070885					48	23	3	0	0	0	0.39956	1	13335	13335		19.439	0	1	1417100			23564	1195	13355	13356	29703	29703					0.12584153662180597
LLADQNLKF	9	Unmodified	_LLADQNLKF_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3218383789062	2	531.303124	1060.5917	0.41244	0.00021913	-0.70758	-0.00037594	-0.29514	-0.00015681	531.3025312448417	69.279	0.59653	69.257	68.892	69.489	-0.022087					26	20	2	0	0	0	0.26879	1	17410	17410		13.508	0.97634	1	118760			23565	5445	13356	13357	29704	29704					0.06382315994369492
LLAHCLWF	8	Unmodified	_LLAHCLWF_					0	0	0			REV__ENST00000455976.6_1_15:48624348-48624462:+|nuORF	REV__ENST00000455976.6_1_15:48624348-48624462:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.3109130859375	2	501.765123	1001.51569	0.28222	0.00014161	-3.945	-0.0019795	-3.6628	-0.0018379	502.2641848476234	67.797	0.13889	67.78	67.672	67.811	-0.016296					6	4	2	0	0	0	0.34147	1	17000	17000		11.114	0.93107	1	51723	+		23566	21166	13357	13358	29705	29705					0.01499640613246811
LLAHFDSL	8	Unmodified	_LLAHFDSL_					0	0	0		nc|ENSG00000111581|P57740-2|NUP107;ENST00000229179.8_1_12:69082797-69084434:+|nuORF;ENST00000540453.5_1_12:69082797-69083453:+|nuORF	nc|ENSG00000111581|P57740-2|NUP107	nc|ENSG00000111581|P57740-2|NUP107	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.1944885253906	2	458.25036	914.486168	-0.21377	-9.7962E-05	-2.8075	-0.0012865	-3.0213	-0.0013845	458.2483295752357	28.312	0.69461	28.312	28.065	28.76	0					45	23	4	0	0	0	0.32435	1	4907	4907		23.148	6.2061	1	232470			23567	12649	13358	13359	29706	29706					0.025503998687554486
LLAHNIRL	8	Unmodified	_LLAHNIRL_					0	0	0			REV__nc|ENSG00000099331|Q13459-2|MYO9B	REV__nc|ENSG00000099331|Q13459-2|MYO9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.30084228515625	2	475.300719	948.586885	0.20651	9.8153E-05	0.095669	4.5471E-05	0.30218	0.00014362	475.3007078962242	32.872	1.81	32.926	32.277	34.087	0.054371					158	65	4	0	0	0	0.28861	1	6356	6356		32.117	5.2333	1	5422500	+		23568	14129	13359	13360	29707	29707					0.11053476642268834
LLAHTARVLSP	11	Unmodified	_LLAHTARVLSP_					0	0	0		ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36	ENSG00000163482|ENST00000295709|STK36	ENSG00000163482|ENST00000295709|STK36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3438110351562	2	589.356222	1176.69789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.817	1	96.888	96.388	97.388	0.070465								0	0	0	0.37501	1	25891	25891		2.7352	0.89096	1				23569	5687	13360	13361	29708	29708					0.11661071559706215
LLAKAVVKL	9	Unmodified	_LLAKAVVKL_					0	0	0			REV__ENST00000439473.5_1_7:102916053-102920599:-|nuORF	REV__ENST00000439473.5_1_7:102916053-102920599:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.2637023925781	2	477.839146	953.663738	0.57263	0.00027363	0.014602	6.9775E-06	0.58724	0.0002806	477.838968521371	50.833	0.40712	50.833	50.623	51.03	0					22	14	2	0	0	0	0.26257	1	11761	11761		0	0	1	221440	+		23570	19906	13361	13362	29709	29709					0.1850527513875022
LLALALGGLA	10	Unmodified	_LLALALGGLA_					0	0	0		nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.300537109375	2	456.299853	910.585153	0.36763	0.00016775	1.0535	0.00048071	1.4211	0.00064846	456.3001858137264	46.837	0.67799	46.837	46.566	47.244	0					39	23	2	0	0	0	0.20432	1	10610	10610		32.117	0	1	700550			23571	835	13362	13363	29710	29710					0.1262842283366581
LLALLAGGAL	10	Unmodified	_LLALLAGGAL_					0	0	0			REV__ENST00000526749.1_1_8:145735004-145735891:+|nuORF	REV__ENST00000526749.1_1_8:145735004-145735891:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.300537109375	2	456.299853	910.585153	0.43068	0.00019652	0.67454	0.00030779	1.1052	0.00050431	456.30013414341704	46.826	0.62452	46.88	46.631	47.256	0.054375					37	21	2	0	0	0	0.13612	1	10576	10576		40.449	8.1431	1	565940	+		23572	17403	13363	13364	29711	29711					0.1262842283365444
LLALLAGGAL	10	Unmodified	_LLALLAGGAL_					0	0	0			REV__ENST00000526749.1_1_8:145735004-145735891:+|nuORF	REV__ENST00000526749.1_1_8:145735004-145735891:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	456.299853	910.585153	0.43068	0.00019652	0.67454	0.00030779	1.1052	0.00050431	456.30013414341704	46.826	0.62452	46.88	46.631	47.256	0.054375	0.015882	-6.0733E-05	NaN	40.449	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565940	+		23573	17403	13363	13364							0.1262842283365444
LLALVVNKN	9	Unmodified	_LLALVVNKN_					0	0	0			REV__FKTN|p.K278Rfs*6|1|0.22|ENSG00000106692|chr9:105615328-105615328|A/-|frameshift_variant	REV__FKTN|p.K278Rfs*6|1|0.22|ENSG00000106692|chr9:105615328-105615328|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.32635498046875	2	492.316035	982.617516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.27	1	111.27	110.77	111.77	0								0	0	0	0.26334	1	28951	28951		2.0598	0.21551	1		+		23574	14532	13364	13365	29712	29712					0.12551210236654242
LLAPLGAQV	9	Unmodified	_LLAPLGAQV_					0	0	0			REV__ENST00000352645.4_1_22:41738540-41739446:+|nuORF	REV__ENST00000352645.4_1_22:41738540-41739446:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2760314941406	2	441.276378	880.538203	0.21915	9.6706E-05	-0.15417	-6.8031E-05	0.064982	2.8675E-05	441.2761724401633	68.767	1.4169	68.748	67.938	69.355	-0.019157					104	50	3	0	0	0	0.013276	1	17252	17252		74.396	7.361	1	1272000	+		23575	20168	13365	13366	29713	29713					0.09315563282518724
LLAPLVTL	8	Unmodified	_LLAPLVTL_					0	0	0			REV__nc|ENSG00000181856|P14672-2|SLC2A4	REV__nc|ENSG00000181856|P14672-2|SLC2A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2835388183594	2	420.283672	838.552791	0.28185	0.00011846	-0.20174	-8.4786E-05	0.080116	3.3672E-05	420.2833920236205	83.267	0.78008	83.246	83.053	83.833	-0.020584					45	32	2	0	0	0	0.1245	1	21767	21767		70.865	11.069	1	495200	+		23576	18168	13366	13367	29714	29714					0.12705635430654638
LLAPLVTL	8	Unmodified	_LLAPLVTL_					0	0	0			REV__nc|ENSG00000181856|P14672-2|SLC2A4	REV__nc|ENSG00000181856|P14672-2|SLC2A4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	420.283672	838.552791	0.22635	9.5132E-05	-0.27647	-0.0001162	-0.050117	-2.1063E-05	420.28339441066606	83.379	0.76682	83.379	83.001	83.768	0	0.058353	-2.7793E-06	NaN	70.865	59	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	447990	+		23577	18168	13366	13367							0.12705635430654638
LLAPLVTL	8	Unmodified	_LLAPLVTL_					0	0	0			REV__nc|ENSG00000181856|P14672-2|SLC2A4	REV__nc|ENSG00000181856|P14672-2|SLC2A4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	420.283672	838.552791	0.21809	9.1659E-05	-0.32987	-0.00013864	-0.11178	-4.698E-05	420.28341281819183	83.264	0.73129	83.337	83.003	83.734	0.073097	0.016252	-4.7666E-05	NaN	70.865	45	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523920	+		23578	18168	13366	13367							0.12705635430654638
LLAPPLLL	8	Unmodified	_LLAPPLLL_					0	0	0			REV__ENSG00000161610|ENST00000293330|HCRT	REV__ENSG00000161610|ENST00000293330|HCRT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.2940673828125	2	425.29404	848.573526	-0.23722	-0.00010089	0.19975	8.4954E-05	-0.037466	-1.5934E-05	425.29430710320406	96.592	2.0395	96.663	96.159	98.199	0.070457					592	217	4	0	0	0	0.1467	1	25915	25915		52.334	10.517	1	13233000	+		23579	16943	13367	13368	29715	29715					0.14318225810313834
LLAQHLVR	8	Unmodified	_LLAQHLVR_					0	0	0			REV__ENST00000502426.5_1_17:48736553-48755440:+|nuORF	REV__ENST00000502426.5_1_17:48736553-48755440:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.22772216796875	2	475.300719	948.586885	-0.1237	-5.8794E-05	-0.0017877	-8.497E-07	-0.12549	-5.9644E-05	475.3006412773506	34.402	0.56485	34.479	34.11	34.675	0.077377					34	19	2	0	0	0	0.34337	1	6703	6703		5.2307	0.90143	1	142830	+		23580	14613	13368	13369	29716	29716					0.11053476642268834
LLARHLKAT	9	Unmodified	_LLARHLKAT_					0	0	0		ENST00000562464.1_1_16:88876554-88878111:-|nuORF;nc|ENSG00000198931|P07741-2|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF;ENSG00000198931|ENST00000378364|APRT	ENST00000562464.1_1_16:88876554-88878111:-|nuORF	ENST00000562464.1_1_16:88876554-88878111:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.8274230957031	2	511.827101	1021.63965	0.27325	0.00013986	0.15377	7.8706E-05	0.42702	0.00021856	511.82714383517083	32.961	0.59025	32.961	32.72	33.31	0					45	20	3	0	0	0	0.31038	1	6339	6339		7.2892	0	1	447770			23581	8164	13369	13370	29717	29717					0.12969434705075855
LLARLTLPV	9	Unmodified	_LLARLTLPV_					0	0	0			REV__ENST00000371799.8_1_9:137968766-137969066:+|nuORF	REV__ENST00000371799.8_1_9:137968766-137969066:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3158264160156	2	498.334227	994.653902	0.3401	0.00016948	-0.96838	-0.00048258	-0.62828	-0.00031309	498.3335122207089	69.923	1.1776	69.923	69.455	70.633	0					67	42	2	0	0	0	0.24739	1	17632	17632		13.508	4.9146	1	199590	+		23582	20405	13370	13371	29718	29718					0.15636087133373167
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3345031738281	2	498.334227	994.653902	0.37034	0.00018455	0.03689	1.8384E-05	0.40723	0.00020294	498.3342956022932	67.465	0.5414	67.465	67.165	67.706	0					68	18	4	0	0	0	0.034444	2	16934	16934;16978		58.679	8.0934	1	12553000			23583	2058	13371	13372	29719;29720	29719					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.33428955078125	2	498.334227	994.653902	0.38239	0.00019056	-0.22752	-0.00011338	0.15487	7.7179E-05	498.33444600556777	67.975	1.9443	67.975	67.673	69.618	0					205	70	5	0	0	0	0.057976	2	17022	17022;17165		49.933	8.0934	1	33411000			23584	2058	13371	13372	29721;29722	29721					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3343200683594	2	498.334227	994.653902	0.13784	6.8688E-05	0.62149	0.00030971	0.75933	0.0003784	498.3344280646684	73.687	1.0667	73.687	73.307	74.374	0					92	36	4	0	0	0	0.10197	1	18812	18812		37.974	0	1	2867400			23585	2058	13371	13372	29723	29723					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3344421386719	2	498.334227	994.653902	0.3947	0.00019669	0.0042454	2.1156E-06	0.39895	0.00019881	498.3342605778695	67.343	0.56468	67.421	67.122	67.687	0.078041					80	19	5	0	0	0	0.057976	1	16898	16898		49.933	8.0934	1	12521000			23586	2058	13371	13372	29724	29724					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.33453369140625	2	498.334227	994.653902	0.47787	0.00023814	-0.35581	-0.00017731	0.12206	6.0827E-05	498.3344097747866	67.911	3.1023	67.989	67.687	70.789	0.078041					238	111	5	0	0	0	0.057976	2	17115	16984;17115		49.933	4.2334	1	33693000			23587	2058	13371	13372	29725;29726	29726					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3343200683594	2	498.334227	994.653902	0.27628	0.00013768	0.57894	0.00028851	0.85522	0.00042619	498.33442362446067	73.704	1.3495	73.756	72.947	74.296	0.052361					110	47	4	0	0	0	0.15219	1	18791	18791		30.637	0	1	2825200			23588	2058	13371	13372	29727	29727					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.3345031738281	2	498.334227	994.653902	0.23413	0.00011667	0.21496	0.00010712	0.44908	0.00022379	498.3343526930711	67.494	0.55652	67.477	67.115	67.672	-0.016296					73	18	5	0	0	0	0.057976	2	16927	16927;16971		49.933	8.0934	1	10990000			23589	2058	13371	13372	29728;29729	29728					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.755615234375	2	498.334227	994.653902	0.41057	0.0002046	-0.55031	-0.00027424	-0.13974	-6.9637E-05	498.3340072458786	70.465	0.92001	70.441	70.079	70.999	-0.024864					48	32	2	0	0	0	0.24471	1	17978	17978		12.241	0	1	172050			23590	2058	13371	13372	29730	29730					0.15636087133384535
LLARSPIL	8	Unmodified	_LLARSPIL_					0	0	0			REV__ENST00000337147.11_1_6:159186803-159186968:-|nuORF	REV__ENST00000337147.11_1_6:159186803-159186968:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.75018310546875	2	441.792195	881.569838	0.03954	1.7468E-05	0.26927	0.00011896	0.30881	0.00013643	441.7922357868414	52.423	0.35408	52.422	52.141	52.495	-0.00081253					16	12	2	0	0	0	0.32099	1	12304	12304		25.399	0	1	190080	+		23591	20081	13372	13373	29731	29731					0.12431556036472102
LLARYQAL	8	Unmodified	_LLARYQAL_					0	0	0			REV__ENSG00000171119|ENST00000303212|NRTN	REV__ENSG00000171119|ENST00000303212|NRTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7294616699219	2	474.287277	946.560001	0.32028	0.0001519	-0.059638	-2.8286E-05	0.26064	0.00012362	474.28710520408697	51.234	0.40061	51.234	51.006	51.406	0					18	14	2	0	0	0	0.31934	1	11938	11938		18.135	3.2967	1	157330	+		23592	17622	13373	13374	29732	29732					0.08458368031085683
LLASLHLES	9	Unmodified	_LLASLHLES_					0	0	0			REV__ENSG00000160294|ENST00000291688|MCM3AP	REV__ENSG00000160294|ENST00000291688|MCM3AP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.3208923339844	2	491.782025	981.549496	0.37594	0.00018488	-2.2382	-0.0011007	-1.8623	-0.00091584	491.78175774271546	70.523	1.192	70.523	70.183	71.375	0					55	42	2	0	0	0	0.23783	1	18026	18026		18.135	2.2878	1	328980	+		23593	16893	13374	13375	29733	29733					0.05798340585988626
LLATLKPLS	9	Unmodified	_LLATLKPLS_					0	0	0			REV__ENST00000565246.6_2_16:70277537-70279514:-|nuORF	REV__ENST00000565246.6_2_16:70277537-70279514:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7925720214844	2	478.312961	954.611368	0.15678	7.4989E-05	0.18259	8.7335E-05	0.33937	0.00016232	478.31299953021636	52.526	0.8204	52.525	52.274	53.094	-0.00080872					48	29	2	0	0	0	0.21905	1	12490	12490		16.942	0	1	705660	+		23594	22354	13375	13376	29734	29734					0.13224692005132965
LLCALLKPT	9	Unmodified	_LLCALLKPT_					0	0	0			REV__ENSG00000196099|ENST00000309154|OR6M1	REV__ENSG00000196099|ENST00000309154|OR6M1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002014160156	2	486.301539	970.588524	0.069276	3.3689E-05	-0.11222	-5.4571E-05	-0.042941	-2.0882E-05	486.30160265658174	65.272	0.84985	65.272	64.727	65.577	0					48	30	2	0	0	0	0.24913	1	16299	16299		12.532	7.3009	1	223440	+		23595	18617	13376	13377	29735	29735					0.10205349616023796
LLCFWLSI	8	Unmodified	_LLCFWLSI_					0	0	0		ENST00000554641.1_1_14:61278837-61285503:+|nuORF	ENST00000554641.1_1_14:61278837-61285503:+|nuORF	ENST00000554641.1_1_14:61278837-61285503:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7688293457031	2	497.775157	993.53576	0.57454	0.00028599	-2.411	-0.0012001	-1.8365	-0.00091415	497.77333090233805	45.42	1.1721	45.42	44.802	45.974	0					114	42	5	0	0	0	0.35375	1	10121	10121		24.674	1.5255	1	647120			23596	11836	13377	13378	29736	29736					0.03873391553213423
LLCIFEICV	9	Unmodified	_LLCIFEICV_					0	0	0		ENST00000366959.4_1_1:213447250-213447538:+|nuORF	ENST00000366959.4_1_1:213447250-213447538:+|nuORF	ENST00000366959.4_1_1:213447250-213447538:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8209838867188	2	526.779582	1051.54461	0.50658	0.00026685	1.4328	0.00075475	1.9393	0.0010216	527.2834626612665	80.381	0.92645	80.354	79.698	80.625	-0.026825					62	32	3	0	0	0	0.21137	1	20933	20933		24.674	0	1	189230			23597	9718	13378	13379	29737	29737					0.02089997127359311
LLCLILTILVD	11	Unmodified	_LLCLILTILVD_					0	0	0		ENST00000532784.5_1_11:74303703-74306426:+|nuORF	ENST00000532784.5_1_11:74303703-74306426:+|nuORF	ENST00000532784.5_1_11:74303703-74306426:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.257568359375	3	410.257687	1227.75123	0.16521	6.7778E-05	-0.33142	-0.00013597	-0.16622	-6.8191E-05	410.25750188308376	84.84	1.7379	84.84	84.437	86.175	0					144	65	3	0	0	0	0.47633	1	22151	22151		1.2148	1.2148	1	458040			23598	11643	13379	13380	29738	29738					0.14646688227344384
LLCLPLSIF	9	Unmodified	_LLCLPLSIF_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.Q1078Afs*25|1|0.3|ENSG00000077235|chr16:27489664-27489665|-/T|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7764892578125	2	509.803914	1017.59328	0.37797	0.00019269	0.60792	0.00030992	0.98589	0.00050261	509.80406791576485	90.089	0.39992	90.089	89.786	90.186	0.0003891					56	35	2	0	0	0	0.24739	1	23852	23852		13.508	0.97634	1	110030			23599	1082	13380	13381	29739	29739					0.08518233758775295
LLCMSIILFL	10	Unmodified	_LLCMSIILFL_					0	0	0			REV__nc|ENSG00000188175|A8MVW5-2|HEPACAM2	REV__nc|ENSG00000188175|A8MVW5-2|HEPACAM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3562622070312	2	583.339806	1164.66506	0.54332	0.00031694	0.094777	5.5287E-05	0.6381	0.00037223	583.3397285912431	79.25	0.56029	79.221	78.983	79.544	-0.028931					51	22	3	0	0	0	0.29978	1	20527	20527		20.454	3.3407	1	323770	+		23600	18544	13381	13382	29740	29740					0.08931405120983982
LLCVLRVYFL	10	Unmodified	_LLCVLRVYFL_					0	0	0		ENST00000232564.7_1_3:179118669-179118753:-|nuORF	ENST00000232564.7_1_3:179118669-179118753:-|nuORF	ENST00000232564.7_1_3:179118669-179118753:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2137145996094	3	413.582505	1237.72569	0.08929	3.6929E-05	-0.021864	-9.0426E-06	0.067425	2.7886E-05	413.91681101650215	18.061	0.27747	17.944	17.84	18.117	-0.11739					20	9	3	0	0	0	0.31847	1	1835	1835		3.5871	0.5148	1	17679			23601	8865	13382	13383	29741	29741					0.11633258495589871
LLCVLRVYFL	10	Unmodified	_LLCVLRVYFL_					0	0	0		ENST00000232564.7_1_3:179118669-179118753:-|nuORF	ENST00000232564.7_1_3:179118669-179118753:-|nuORF	ENST00000232564.7_1_3:179118669-179118753:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	413.582505	1237.72569	-0.12359	-5.1116E-05	-0.59733	-0.00024704	-0.72092	-0.00029816	413.58250877525023	17.929	0.27977	17.929	17.771	18.051	0	-0.0074036	-0.00029724	NaN	3.5871	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24396			23602	8865	13382	13383							0.11633258495589871
LLDCIINFR	9	Unmodified	_LLDCIINFR_					0	0	0			REV__nc|ENSG00000135476|Q14674-2|ESPL1	REV__nc|ENSG00000135476|Q14674-2|ESPL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.830078125	2	553.804977	1105.5954	0.17525	9.7054E-05	0.15165	8.3986E-05	0.3269	0.00018104	553.8039862116266	81.867	0.50816	81.936	81.675	82.183	0.068993					57	21	4	0	0	0	0.20881	1	21332	21332		16.149	0	1	446370	+		23603	15745	13383	13384	29742	29742					0.04682662496566081
LLDEYELSI	9	Unmodified	_LLDEYELSI_					0	0	0		ENSG00000174225|ENST00000450049|ARL13A;nc|ENSG00000174225|Q5H913|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.365966796875	2	547.78443	1093.55431	1.0317	0.00056513	0.90977	0.00049836	1.9414	0.0010635	547.7849118034973	33.67	0.58145	33.737	33.51	34.092	0.06636					33	20	2	0	0	0	0.25526	1	6516	6516		7.9102	0	1	271890			23604	6779	13384	13385	29743	29743					0.011271799381120218
LLDFFFSF	8	Unmodified	_LLDFFFSF_					0	0	0		ENST00000263464.7_1_11:102188245-102192648:+|nuORF	ENST00000263464.7_1_11:102188245-102192648:+|nuORF	ENST00000263464.7_1_11:102188245-102192648:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2957153320312	2	518.262936	1034.51132	0.52471	0.00027194	-1.2089	-0.00062651	-0.68416	-0.00035458	518.2624461271826	49.452	0.4909	49.452	49.135	49.626	0					23	17	2	0	0	0	0.34185	1	11412	11412		10.183	0.83596	1	135910			23605	9009	13385	13386	29744	29744					-0.0045554532866844966
LLDFLKRNKE	10	Unmodified	_LLDFLKRNKE_					0	0	0			REV__ENST00000587730.5_1_19:14520346-14520718:-|nuORF	REV__ENST00000587730.5_1_19:14520346-14520718:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3740234375	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.381	1	95.377	94.877	95.877	-0.0038147								0	0	0	0.38126	1	25477	25477		1.6526	0	1		+		23606	15180	13386	13387	29745	29745					0.10829323385587486
LLDGGARIHH	10	Unmodified	_LLDGGARIHH_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7836303710938	2	544.801614	1087.58868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.113	1	23.113	22.613	23.613	0								0	0	0	0.37664	1	3349	3349		3.5965	0.60125	1				23607	5186	13387	13388	29746	29746					0.04838485660229708
LLDHFICEL	9	Unmodified	_LLDHFICEL_					0	0	0		ENSG00000237988|ENST00000641137|OR2I1P;nc|ENSG00000237988|Q8NGU4|OR2I1P	ENSG00000237988|ENST00000641137|OR2I1P	ENSG00000237988|ENST00000641137|OR2I1P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3076171875	2	551.78371	1101.55287	0.37418	0.00020647	0.80259	0.00044286	1.1768	0.00064932	551.7838974985065	52.33	1.1762	52.33	51.836	53.012	0					162	42	5	0	0	0	0.27532	1	12423	12423		12.532	0	1	4185000			23608	8508	13388	13389	29747	29747					0.006152673683345711
LLDHYEWNCF	10	Unmodified	_LLDHYEWNCF_					0	0	0		nc|ENSG00000152578|P48058-2|GRIA4;ENSG00000152578|ENST00000282499|GRIA4;ENST00000525032.1_1_11:105481676-105732994:+|nuORF	nc|ENSG00000152578|P48058-2|GRIA4;ENST00000525032.1_1_11:105481676-105732994:+|nuORF	ENST00000525032.1_1_11:105481676-105732994:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.7871398925781	3	447.197379	1338.57031	0.1205	5.3887E-05	-1.5577	-0.0006966	-1.4372	-0.00064271	447.5309551630973	60.322	0.12639	60.311	60.198	60.324	-0.011486					6	4	2	0	0	0	0.32033	1	14707	14707		4.1895	1.3462	1	96549			23609	5025;11530	13389	13390	29748	29748					-0.08543437096659545
LLDLETEEPF	10	Unmodified	_LLDLETEEPF_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8744506835938	2	603.300444	1204.58634	0.58461	0.0003527	0.63677	0.00038416	1.2214	0.00073686	603.3007156568257	57.307	2.0576	57.393	56.582	58.639	0.085621					102	75	2	0	0	0	0.31267	1	13793	13793		6.2058	0	1	462980	+		23610	15947	13390	13391	29749	29749					-0.007774523787702492
LLDNPCTDE	9	Unmodified	_LLDNPCTDE_					0	0	0		ENSG00000010626|ENST00000443597|LRRC23	ENSG00000010626|ENST00000443597|LRRC23	ENSG00000010626|ENST00000443597|LRRC23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8038330078125	2	510.221139	1018.42773	0.47143	0.00024053	0.31778	0.00016214	0.78922	0.00040268	510.2212023157019	75.082	0.49775	75.082	74.871	75.369	0					28	17	2	0	0	0	0.25526	1	19303	19303		7.9102	0	1	305040			23611	426	13391	13392	29750	29750					-0.08075069558685755
LLDNPCTDE	9	Unmodified	_LLDNPCTDE_					0	0	0		ENSG00000010626|ENST00000443597|LRRC23	ENSG00000010626|ENST00000443597|LRRC23	ENSG00000010626|ENST00000443597|LRRC23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.803955078125	2	510.221139	1018.42773	0.52972	0.00027027	0.63675	0.00032488	1.1665	0.00059515	510.22147945627916	75.162	0.66492	75.131	74.893	75.558	-0.031487					37	24	2	0	0	0	0.25706	1	19342	19342		6.7232	4.1457	1	262790			23612	426	13391	13392	29751	29751					-0.08075069558685755
LLDPLWTL	8	Unmodified	_LLDPLWTL_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.26812744140625	2	485.784036	969.553519	0.3667	0.00017814	-1.4063	-0.00068316	-1.0396	-0.00050503	485.7832864498358	88.904	0.66883	88.904	88.584	89.253	0					53	28	3	0	0	0	0.43302	1	23443	23443		11.64	0	1	165760			23613	1059	13392	13393	29752	29752					0.06752430079700389
LLDSPLSWVY	10	Unmodified	_LLDSPLSWVY_					0	0	0			REV__nc|ENSG00000239998|Q8N149-3|LILRA2	REV__nc|ENSG00000239998|Q8N149-3|LILRA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.81689453125	2	596.816064	1191.61758	0.12381	7.3894E-05	0.32362	0.00019314	0.44744	0.00026704	596.8164596012222	28.029	1.3349	28.029	27.589	28.924	0					172	46	6	0	0	0	0.38233	1	5088	5088		6.7232	3.4419	1	7748400	+		23614	19166	13393	13394	29753	29753					0.02943165446004059
LLDTEHIIQ	9	Unmodified	_LLDTEHIIQ_					0	0	0			REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF	REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7715454101562	2	541.298039	1080.58152	0.68254	0.00036946	3.7702	0.0020408	4.4528	0.0024103	541.2995109234076	72.614	1.2827	72.585	71.898	73.181	-0.029305					66	45	3	0	0	0	0.21905	1	18567	18567		16.942	9.0321	1	183420	+		23615	15924	13394	13395	29754	29754					0.04445708269145143
LLDWVGAPAF	10	Unmodified	_LLDWVGAPAF_					0	0	0		nc|ENSG00000103111|Q7L1V2-2|MON1B;ENST00000566455.1_1_16:77227993-77232202:+|nuORF;ENSG00000103111|ENST00000248248|MON1B	nc|ENSG00000103111|Q7L1V2-2|MON1B	nc|ENSG00000103111|Q7L1V2-2|MON1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3175048828125	2	544.792392	1087.57023	0.066578	3.6271E-05	0.93863	0.00051136	1.0052	0.00054763	544.792269290464	114.22	0.2817	114.22	114.01	114.3	0					52	31	2	0	0	0	0.32009	1	29599	29599		3.9444	0	1	28160			23616	1809	13395	13396	29755	29755					0.029949309656331025
LLDWVGAPAF	10	Unmodified	_LLDWVGAPAF_					0	0	0		nc|ENSG00000103111|Q7L1V2-2|MON1B;ENST00000566455.1_1_16:77227993-77232202:+|nuORF;ENSG00000103111|ENST00000248248|MON1B	nc|ENSG00000103111|Q7L1V2-2|MON1B	nc|ENSG00000103111|Q7L1V2-2|MON1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3175048828125	2	544.792392	1087.57023	0.066627	3.6298E-05	0.76543	0.000417	0.83206	0.0004533	544.7921946712831	113.85	0.39533	113.85	113.65	114.04	0					69	45	2	0	0	0	0.32009	1	29599	29599		3.9444	0	1	35402			23617	1809	13395	13396	29756	29756					0.029949309656331025
LLEAAASPILK	11	Unmodified	_LLEAAASPILK_					0	0	0		nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.258544921875	2	563.347532	1124.68051	0.24767	0.00013953	-3.3887	-0.001909	-3.141	-0.0017695	563.3453671506994	17.035	0.45046	17.035	16.867	17.318	0					21	15	2	0	0	0	0.3327	1	1522	1522		2.7352	0	1	55108			23618	5935	13396	13397	29757	29757					0.12315731234025407
LLEALLPQFTL	11	Unmodified	_LLEALLPQFTL_					0	0	0			REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.9197998046875	3	419.919952	1256.73803	-0.17446	-7.3258E-05	-0.28228	-0.00011853	-0.45673	-0.00019179	419.9198576556414	23.863	0.71068	23.863	23.569	24.279	0					57	24	3	0	0	0	0.32493	1	3583	3583		19.987	0.36094	1	232530	+		23619	13772	13397	13398	29758	29758					0.11992573439601983
LLEALLPQFTL	11	Unmodified	_LLEALLPQFTL_					0	0	0			REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.9198913574219	3	419.919952	1256.73803	0.13752	5.7747E-05	-1.1123	-0.00046707	-0.97475	-0.00040932	419.9194992441161	23.955	1.1087	23.916	23.283	24.392	-0.038927					85	38	3	0	0	0	0.36722	1	3625	3625		15.538	15.538	1	241820	+		23620	13772	13397	13398	29759	29759					0.11992573439601983
LLEALLPQFTL	11	Unmodified	_LLEALLPQFTL_					0	0	0			REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	419.919952	1256.73803	0.017901	7.517E-06	-1.0884	-0.00045703	-1.0705	-0.00044951	419.9194995714406	24.018	1.0697	23.945	23.257	24.327	-0.072559	0.037166	-0.00055155	NaN	19.987	77	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248190	+		23621	13772	13397	13398							0.11992573439601983
LLEEMLWF	8	Unmodified	_LLEEMLWF_					0	0	0		ENSG00000186198|ENST00000334287|SLC51B	ENSG00000186198|ENST00000334287|SLC51B	ENSG00000186198|ENST00000334287|SLC51B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.776611328125	2	540.775354	1079.53615	0.14341	7.7553E-05	1.866	0.0010091	2.0094	0.0010866	540.7763815787513	60.331	0.47477	60.426	60.131	60.606	0.095089					30	17	2	0	0	0	0.37319	1	14768	14768		22.453	4.3063	1	596690			23622	7602	13398	13399	29760	29760					-0.0004323351761286176
LLEEPHLF	8	Unmodified	_LLEEPHLF_					0	0	0		ENST00000479712.1_1_13:115052026-115057011:+|nuORF	ENST00000479712.1_1_13:115052026-115057011:+|nuORF	ENST00000479712.1_1_13:115052026-115057011:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.755615234375	2	499.271293	996.528032	0.43485	0.00021711	-0.7858	-0.00039233	-0.35095	-0.00017522	499.2708447739203	70.909	0.38799	70.885	70.611	70.999	-0.024864					20	13	2	0	0	0	0.32778	1	17978	17978		14.582	0	1	145290			23623	10995	13399	13400	29761	29761					0.02962955557291025
LLEFAPVFL	9	Unmodified	_LLEFAPVFL_					0	0	0			REV__ENST00000468090.5_1_21:45176243-45176483:+|nuORF	REV__ENST00000468090.5_1_21:45176243-45176483:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2686157226562	2	524.807511	1047.60047	0.72713	0.0003816	-1.8328	-0.00096188	-1.1057	-0.00058027	525.3071386964244	77.281	0.48712	77.281	76.957	77.444	0					25	17	2	0	0	0	0.24739	1	19980	19980		13.508	0.97634	1	103470	+		23624	21315	13400	13401	29762	29762					0.07857289630851483
LLEFENYF	8	Unmodified	_LLEFENYF_					0	0	0			REV__ENST00000488149.5_1_3:182948954-183027611:-|nuORF	REV__ENST00000488149.5_1_3:182948954-183027611:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7616577148438	2	537.760758	1073.50696	0.57984	0.00031182	0.80457	0.00043266	1.3844	0.00074448	537.7612898340047	82.27	0.48768	82.247	81.985	82.473	-0.022606					34	18	2	0	0	0	0.35375	1	21438	21438		24.674	0	1	635380	+		23625	13578	13401	13402	29763	29763					-0.02685054542234866
LLEFENYF	8	Unmodified	_LLEFENYF_					0	0	0			REV__ENST00000488149.5_1_3:182948954-183027611:-|nuORF	REV__ENST00000488149.5_1_3:182948954-183027611:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7614135742188	2	537.760758	1073.50696	0.62872	0.0003381	0.92034	0.00049493	1.5491	0.00083303	537.7611167831257	82.712	0.41791	82.691	82.45	82.868	-0.020584					31	16	2	0	0	0	0.28861	1	21607	21607		32.117	0	1	610220	+		23626	13578	13401	13402	29764	29764					-0.02685054542234866
LLEFIGNEEVL	11	Unmodified	_LLEFIGNEEVL_					0	0	0			REV__ENSG00000184363|ENST00000331563|PKP3	REV__ENSG00000184363|ENST00000331563|PKP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.9222106933594	3	425.899216	1274.67582	-0.092333	-3.9324E-05	3.4828	0.0014833	3.3905	0.001444	425.9007671336585	42.459	0.19184	42.551	42.441	42.633	0.091362					9	6	2	0	0	0	0.32737	1	9216	9216		11.065	0.26577	1	107780	+		23627	18313	13402	13403	29765	29765					0.049468023006284056
LLEFNTTV	8	Unmodified	_LLEFNTTV_					0	0	0		IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.75567626953125	2	468.755475	935.496398	0.050325	2.359E-05	0.29102	0.00013642	0.34135	0.00016001	468.75547055882896	62.987	0.67094	62.987	62.718	63.389	0					56	24	3	0	0	0	0.11736	1	15599	15599		57.471	5.203	1	804760			23628	7927	13403	13404	29766	29766					0.02606962803326951
LLEGKGKVF	9	Unmodified	_LLEGKGKVF_					0	0	0			REV__ENSG00000138031|ENST00000679454|ADCY3	REV__ENSG00000138031|ENST00000679454|ADCY3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.8028259277344	2	495.80276	989.590967	0.33226	0.00016473	0.65046	0.0003225	0.98272	0.00048723	495.80299945120834	68.44	0.72363	68.512	68.24	68.964	0.071938					69	26	4	0	0	0	0.30166	1	17306	17306		8.5933	1.304	1	1524900	+		23629	15896	13404	13405	29767	29767					0.09575521345323068
LLEGKGKVF	9	Unmodified	_LLEGKGKVF_					0	0	0			REV__ENSG00000138031|ENST00000679454|ADCY3	REV__ENSG00000138031|ENST00000679454|ADCY3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.8033752441406	2	495.80276	989.590967	0.43038	0.00021338	0.50734	0.00025154	0.93772	0.00046492	495.80290042987735	68.486	0.56429	68.467	68.252	68.816	-0.019157					51	19	3	0	0	0	0.30166	1	17322	17322		8.5933	1.304	1	1787900	+		23630	15896	13404	13405	29768	29768					0.09575521345323068
LLEGNYVTF	9	Unmodified	_LLEGNYVTF_					0	0	0			REV__ENSG00000112238|ENST00000369215|PRDM13	REV__ENSG00000112238|ENST00000369215|PRDM13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2747192382812	2	528.274032	1054.53351	0.48431	0.00025585	0.99517	0.00052572	1.4795	0.00078157	528.2743896795768	80.191	0.58731	80.191	79.825	80.412	0					47	21	3	0	0	0	0.11461	1	20831	20831		36.127	5.4905	1	485620	+		23631	14766	13405	13406	29769	29769					0.008426343491009902
LLEGNYVTF	9	Unmodified	_LLEGNYVTF_					0	0	0			REV__ENSG00000112238|ENST00000369215|PRDM13	REV__ENSG00000112238|ENST00000369215|PRDM13	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	528.274032	1054.53351	0.48431	0.00025585	0.99517	0.00052572	1.4795	0.00078157	528.2743896795768	80.191	0.58731	80.191	79.825	80.412	0	0.013837	-0.0001111	NaN	36.127	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485620	+		23632	14766	13405	13406							0.008426343491009902
LLEKIKKMKV	10	Unmodified	_LLEKIKKMKV_					0	0	0			REV__ENSG00000273559|ENST00000614790|CWC25	REV__ENSG00000273559|ENST00000614790|CWC25	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	615.4047241210938	2	615.404327	1228.7941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.29	1	34.29	33.79	34.79	0								0	0	0	0.38166	1	6745	6745		1.4819	0.15237	1		+		23633	19321	13406	13407	29770	29770					0.1888550307544392
LLELHEVLG	9	Unmodified	_LLELHEVLG_					0	0	0			REV__PPP1R12B|p.D291Y|1|0.38|ENSG00000077157|chr1:202428879-202428879|G/T|missense_variant	REV__PPP1R12B|p.D291Y|1|0.38|ENSG00000077157|chr1:202428879-202428879|G/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.7814636230469	2	511.797675	1021.5808	0.099732	5.1042E-05	-2.5758	-0.0013183	-2.476	-0.0012672	511.79632936157725	15.691	0.61818	15.691	15.445	16.063	0					46	21	4	0	0	0	0.21303	1	1211	1211		21.747	4.6338	1	320180	+		23634	13838	13407	13408	29771	29771					0.07086913620094037
LLELRIVF	8	Unmodified	_LLELRIVF_					0	0	0		ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.291259765625	2	501.820953	1001.62735	0.54236	0.00027217	-1.4454	-0.00072534	-0.90306	-0.00045318	501.8200599048005	75.365	0.13536	75.334	75.207	75.342	-0.031487					6	4	2	0	0	0	0.33995	1	19341	19341		15.768	0	1	68205			23635	2602	13408	13409	29772	29772					0.12660398242030624
LLELVIDRLL	10	Unmodified	_LLELVIDRLL_					0	0	0		CCDC157|p.R530Tfs*129|1|0.44|ENSG00000187860|chr22:30374004-30374005|-/A|frameshift_variant;ENSG00000187860|ENST00000338306|CCDC157	CCDC157|p.R530Tfs*129|1|0.44|ENSG00000187860|chr22:30374004-30374005|-/A|frameshift_variant	CCDC157|p.R530Tfs*129|1|0.44|ENSG00000187860|chr22:30374004-30374005|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3824462890625	2	598.884281	1195.75401	0.38656	0.0002315	-0.49253	-0.00029497	-0.10597	-6.3462E-05	598.8839329214879	37.429	0.61221	37.522	37.448	38.06	0.093018					34	22	2	0	0	0	0.32132	1	7702	7702		1.4819	0	1	263330			23636	92	13409	13410	29773	29773					0.16396279676496306
LLEMAWSPFD	10	Unmodified	_LLEMAWSPFD_					0	0	0			REV__ENST00000510369.5_1_5:32355868-32383900:-|nuORF	REV__ENST00000510369.5_1_5:32355868-32383900:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.2883911132812	2	604.78645	1207.55835	0.45628	0.00027595	0.16665	0.00010079	0.62293	0.00037674	604.7864800787154	74.092	1.3934	74.144	73.578	74.971	0.052361					60	48	2	0	0	0	0.3641	1	18975	18975		10.074	0	1	483250	+		23637	13596	13410	13411	29774	29774					-0.037130538398514545
LLEMFSYRMH	10	Unmodified	_LLEMFSYRMH_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.2792053222656	3	442.882626	1325.62605	0.10847	4.804E-05	3.0736	0.0013612	3.182	0.0014093	443.2185654293468	33.274	0.3375	33.34	33.131	33.468	0.06588					16	11	2	0	0	0	0.31911	1	6460	6460		6.6304	1.5829	1	84719			23638	2427	13411	13412	29775	29775					-0.02373927180701685
LLEMYSKFTE	10	Unmodified	_LLEMYSKFTE_					0	0	0			REV__ENSG00000060749|ENST00000650167|QSER1	REV__ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5349426269531	3	420.877535	1259.61078	-0.31262	-0.00013157	3.3163	0.0013958	3.0037	0.0012642	421.21335087856517	27.712	0.13773	27.701	27.614	27.752	-0.01156					6	4	2	0	0	0	0.32009	1	4729	4729		1.9064	0.1641	1	30591	+		23639	13621	13412	13413	29776	29776					-0.008645154969144642
LLEPLLCIL	9	Unmodified	_LLEPLLCIL_					0	0	0		ENST00000265631.9_1_7:95813708-95814244:-|nuORF	ENST00000265631.9_1_7:95813708-95814244:-|nuORF	ENST00000265631.9_1_7:95813708-95814244:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2677612304688	2	513.817021	1025.61949	0.2647	0.00013601	0.55509	0.00028522	0.8198	0.00042123	513.8159214620758	68.731	0.1923	68.711	68.624	68.816	-0.019157					8	6	2	0	0	0	0.25291	1	17330	17330		9.3474	0	1	100830			23640	9050	13413	13414	29777	29777					0.1077050293024513
LLEPPTMEV	9	Unmodified	_LLEPPTMEV_					0	0	0		ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7701416015625	2	514.770268	1027.52598	0.31097	0.00016008	0.52123	0.00026831	0.8322	0.00042839	514.7703755609828	87.847	0.88185	87.937	87.666	88.548	0.089203					121	46	3	0	0	0	0.28128	1	23303	23303		11.64	0	1	1617200			23641	1559	13414	13415	29778	29778					0.013321587571681448
LLEPRLSLF	9	Unmodified	_LLEPRLSLF_					0	0	0			REV__ENST00000509478.5_1_4:89649686-89652602:-|nuORF	REV__ENST00000509478.5_1_4:89649686-89652602:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.8211669921875	2	544.329142	1086.64373	0.57562	0.00031332	0.019571	1.0653E-05	0.59519	0.00032398	544.3290449354653	65.583	0.42117	65.583	65.373	65.795	0					22	14	2	0	0	0	0.23783	1	16422	16422		18.135	0	1	202280	+		23642	21790	13415	13416	29779	29779					0.10387479408132094
LLEQHDCSF	9	Unmodified	_LLEQHDCSF_					0	0	0			REV__ENSG00000117724|ENST00000366955|CENPF	REV__ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8307495117188	2	546.244949	1090.47534	0.48247	0.00026355	-1.9985	-0.0010916	-1.516	-0.0008281	546.2437169492964	42.453	0.38125	42.538	42.295	42.676	0.085201					25	13	3	0	0	0	0.2322	1	9232	9232		10.074	0	1	268020	+		23643	14990	13416	13417	29780	29780					-0.06627370567844082
LLEQVQPLI	9	Unmodified	_LLEQVQPLI_					0	0	0		nc|ENSG00000117245|Q9P2E2|KIF17;ENSG00000117245|ENST00000400463|KIF17;ENST00000477167.5_1_1:20991079-21011627:-|nuORF	nc|ENSG00000117245|Q9P2E2|KIF17	nc|ENSG00000117245|Q9P2E2|KIF17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8216552734375	2	526.82115	1051.62775	0.32663	0.00017207	0.47165	0.00024847	0.79827	0.00042055	526.8214514775206	80.476	0.56712	80.541	80.264	80.831	0.065094					46	21	3	0	0	0	0.21303	1	20874	20874		21.747	0	1	455670			23644	2785	13417	13418	29781	29781					0.10399773171252491
LLETEYVL	8	Unmodified	_LLETEYVL_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2510986328125	2	490.270958	978.527364	0.35741	0.00017523	-0.65994	-0.00032355	-0.30252	-0.00014832	490.26970742585974	26.957	0.55846	26.946	26.681	27.239	-0.01156					32	19	2	0	0	0	0.34218	1	4497	4497		9.3474	2.9933	1	103820	+		23645	17772	13418	13419	29782	29782					0.037241161175643356
LLEYERSL	8	Unmodified	_LLEYERSL_					0	0	0		ENSG00000184545|ENST00000397374|DUSP8	ENSG00000184545|ENST00000397374|DUSP8	ENSG00000184545|ENST00000397374|DUSP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2548522949219	2	511.779482	1021.54441	0.25367	0.00012982	-0.64295	-0.00032905	-0.38928	-0.00019923	512.2803624295906	68.073	0.30411	68.056	67.871	68.175	-0.016304					16	10	2	0	0	0	0.34185	1	17131	17131		10.183	0.83596	1	68690			23646	7460	13419	13420	29783	29783					0.034500367233818
LLFCILPLI	9	Unmodified	_LLFCILPLI_					0	0	0			REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.82080078125	2	522.829932	1043.64531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.023	1	90.024	89.524	90.524	0.0003891								0	0	0	0.24077	1	23834	23834		9.3474	0	1		+		23647	18260	13420	13421	29784	29784					0.12523397172549267
LLFCSLPLL	9	Unmodified	_LLFCSLPLL_					0	0	0		ENSG00000125384|ENST00000245457|PTGER2	ENSG00000125384|ENST00000245457|PTGER2	ENSG00000125384|ENST00000245457|PTGER2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8038330078125	2	509.803914	1017.59328	0.42826	0.00021833	-0.35251	-0.00017971	0.075749	3.8617E-05	509.8036382599112	74.281	2.861	74.281	72.534	75.395	0					173	101	3	0	0	0	0.2616	4	19093	18947;18996;19093;19142		14.582	5.2343	1	1842200			23648	3200	13421	13422	29785;29786;29787;29788	29787					0.08518233758786664
LLFCSLPLL	9	Unmodified	_LLFCSLPLL_					0	0	0		ENSG00000125384|ENST00000245457|PTGER2	ENSG00000125384|ENST00000245457|PTGER2	ENSG00000125384|ENST00000245457|PTGER2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8038330078125	2	509.803914	1017.59328	0.2354	0.00012001	-0.11861	-6.0466E-05	0.1168	5.9543E-05	509.80377964624006	74.358	2.6692	74.41	72.68	75.349	0.052361					188	95	3	0	0	0	0.2616	3	18968	18916;18968;19150		14.582	14.582	1	2312800			23649	3200	13421	13422	29789;29790;29791	29790					0.08518233758786664
LLFCSLPLL	9	Unmodified	_LLFCSLPLL_					0	0	0		ENSG00000125384|ENST00000245457|PTGER2	ENSG00000125384|ENST00000245457|PTGER2	ENSG00000125384|ENST00000245457|PTGER2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8038330078125	2	509.803914	1017.59328	0.36866	0.00018795	-0.12705	-6.4768E-05	0.24162	0.00012318	509.803738168651	74.265	2.9138	74.235	72.454	75.367	-0.030655					196	105	3	0	0	0	0.22883	4	19192	18964;19009;19131;19192		19.439	19.439	1	2074000			23650	3200	13421	13422	29792;29793;29794;29795	29795					0.08518233758786664
LLFELIELQGC	11	Unmodified	_LLFELIELQGC_					0	0	0			REV__ENSG00000105887|ENST00000393085|MTPN	REV__ENSG00000105887|ENST00000393085|MTPN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.5653381347656	3	426.56518	1276.67371	-0.4194	-0.0001789	0.8612	0.00036736	0.4418	0.00018846	426.5655508617711	13.558	0.47007	13.491	13.359	13.829	-0.067496					39	16	4	0	0	0	0.44828	1	462	462		2.2527	0	1	161980	+		23651	14494	13422	13423	29796	29796					0.04644050291176427
LLFFAKRY	8	Unmodified	_LLFFAKRY_					0	0	0		ALB|p.Y435Tfs*14|1|0.19|ENSG00000163631|chr4:73417543-73417543|T/-|frameshift_variant;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1	ALB|p.Y435Tfs*14|1|0.19|ENSG00000163631|chr4:73417543-73417543|T/-|frameshift_variant	ALB|p.Y435Tfs*14|1|0.19|ENSG00000163631|chr4:73417543-73417543|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3156127929688	2	529.313295	1056.61204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.8	1	117.83	117.33	118.33	0.023476								0	0	0	0.37992	1	30525	30525		0.79363	0	1			+	23652	26	13423	13424	29797	29797					0.08599531444838249
LLFFENYE	8	Unmodified	_LLFFENYE_					0	0	0		ENSG00000105711|ENST00000262631|SCN1B;nc|ENSG00000105711|Q07699-2|SCN1B	ENSG00000105711|ENST00000262631|SCN1B	ENSG00000105711|ENST00000262631|SCN1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7618408203125	2	537.760758	1073.50696	0.55682	0.00029944	0.84525	0.00045454	1.4021	0.00075398	537.7613861891048	82.226	0.46785	82.226	81.968	82.436	0					27	16	2	0	0	0	0.33916	1	21458	21458		26.341	4.5946	1	543260			23653	2014	13424	13425	29798	29798					-0.02685054542234866
LLFFENYE	8	Unmodified	_LLFFENYE_					0	0	0		ENSG00000105711|ENST00000262631|SCN1B;nc|ENSG00000105711|Q07699-2|SCN1B	ENSG00000105711|ENST00000262631|SCN1B	ENSG00000105711|ENST00000262631|SCN1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	537.760758	1073.50696	0.32254	0.00017345	1.1243	0.00060461	1.4469	0.00077806	537.761332587404	82.162	0.51902	82.231	81.95	82.469	0.068993	-0.0035652	0.00023631	NaN	26.341	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514060			23654	2014	13424	13425							-0.02685054542234866
LLFFFRLSPV	10	Unmodified	_LLFFFRLSPV_					0	0	0			REV__ENST00000307849.7_1_2:192542971-192543043:+|nuORF	REV__ENST00000307849.7_1_2:192542971-192543043:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.581787109375	3	413.581382	1237.72232	0.38402	0.00015882	0.52281	0.00021622	0.90683	0.00037505	413.58176939965705	86.111	4.0629	86.196	83.932	87.995	0.084251					387	170	3	0	0	0	0.40992	1	22455	22455		0.69767	0	1	985690	+		23655	19874	13425	13426	29799	29799					0.11296331713219843
LLFFFRLSPV	10	Unmodified	_LLFFFRLSPV_					0	0	0			REV__ENST00000307849.7_1_2:192542971-192543043:+|nuORF	REV__ENST00000307849.7_1_2:192542971-192543043:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.868408203125	2	619.868434	1237.72232	0.062926	3.9006E-05	1.6196	0.0010039	1.6825	0.0010429	619.868719966398	93.573	1.1792	93.66	93.295	94.475	0.08667					72	44	2	0	0	0	0.39935	1	24879	24879		3.5965	0	1	211960	+		23656	19874	13425	13426	29800	29800					0.11296331713219843
LLFFFRLSPV	10	Unmodified	_LLFFFRLSPV_					0	0	0			REV__ENST00000307849.7_1_2:192542971-192543043:+|nuORF	REV__ENST00000307849.7_1_2:192542971-192543043:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5818786621094	3	413.581382	1237.72232	0.391	0.00016171	0.7058	0.00029191	1.0968	0.00045362	413.5817780102486	86.097	3.4873	86.088	84.794	88.281	-0.0090027					334	151	4	0	0	0	0.40992	1	22455	22455		0.69767	0	1	1135900	+		23657	19874	13425	13426	29801	29801					0.11296331713219843
LLFFFRLSPV	10	Unmodified	_LLFFFRLSPV_					0	0	0			REV__ENST00000307849.7_1_2:192542971-192543043:+|nuORF	REV__ENST00000307849.7_1_2:192542971-192543043:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3726806640625	2	619.868434	1237.72232	0.15071	9.3423E-05	1.1683	0.00072417	1.319	0.0008176	619.8691523294976	99.566	0.53395	99.559	99.358	99.892	-0.006897					120	68	2	0	0	0	0.40992	1	26663	26663		1.6526	0	1	135490	+		23658	19874	13425	13426	29802	29802					0.11296331713219843
LLFFRKTI	8	Unmodified	_LLFFRKTI_					0	0	0		ENSG00000278570|ENST00000617575|NR2E3	ENSG00000278570|ENST00000617575|NR2E3	ENSG00000278570|ENST00000617575|NR2E3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.3214721679688	2	519.328945	1036.64334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.603	1	57.603	57.103	58.103	0								0	0	0	0.31676	1	13911	13911		26.341	1.6674	1				23659	8744	13426	13427	29803	29803					0.12648104478944333
LLFKKTPSEY	10	Unmodified	_LLFKKTPSEY_					0	0	0		ENST00000450253.6_1_4:99801895-99802249:-|nuORF	ENST00000450253.6_1_4:99801895-99802249:-|nuORF	ENST00000450253.6_1_4:99801895-99802249:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.20465087890625	3	409.232418	1224.67542	0.31469	0.00012878	-3.1712	-0.0012978	-2.8565	-0.001169	409.2309972698581	37.516	0.56132	37.516	37.285	37.846	0					28	19	2	0	0	0	0.31289	1	7721	7721		8.4443	0	1	160210			23660	10636	13427	13428	29804	29804					0.07207427371440644
LLFLVCKLS	9	Unmodified	_LLFLVCKLS_					0	0	0		ENST00000396821.7_1_22:38879500-38879563:-|nuORF	ENST00000396821.7_1_22:38879500-38879563:-|nuORF	ENST00000396821.7_1_22:38879500-38879563:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3169555664062	2	518.317189	1034.61982	0.41075	0.0002129	-0.17185	-8.9072E-05	0.2389	0.00012382	518.31694104306	79.374	1.4988	79.436	79.018	80.517	0.061417					135	60	3	0	0	0	0.34536	1	20683	20683		2.0598	0	1	1098400			23661	10123	13428	13429	29805	29805					0.10389922650097105
LLFNQLGGSF	10	Unmodified	_LLFNQLGGSF_					0	0	0			REV__nc|ENSG00000284701|A6NEH6|TMEM247	REV__nc|ENSG00000284701|A6NEH6|TMEM247	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7630615234375	2	548.295299	1094.57605	0.55267	0.00030303	-2.1584	-0.0011834	-1.6057	-0.0008804	548.2935634955155	42.259	0.49713	42.344	42.121	42.618	0.085197					24	17	2	0	0	0	0.31267	1	9226	9226		10.074	1.4806	1	249390	+		23662	23239	13429	13430	29806	29806					0.03254029477329823
LLFPLPTML	9	Unmodified	_LLFPLPTML_					0	0	0			REV__ENSG00000196778|ENST00000641528|OR52K1;REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	REV__ENSG00000196778|ENST00000641528|OR52K1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7573852539062	2	522.811739	1043.60893	0.49385	0.00025819	3.6664	0.0019168	4.1602	0.002175	522.8134661301843	70.244	0.22145	70.244	70.103	70.325	0					10	7	2	0	0	0	0.24311	1	17770	17770		16.942	3.4344	1	99075	+		23663	18686;22023	13430	13431	29807	29807					0.08886520275814291
LLFPRVRIP	9	Unmodified	_LLFPRVRIP_					0	0	0			REV__ENST00000463745.5_1_3:97483720-97486940:+|nuORF	REV__ENST00000463745.5_1_3:97483720-97486940:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8613891601562	2	555.860944	1109.70733	0.33249	0.00018482	0.074947	4.166E-05	0.40743	0.00022648	555.8610324202759	51.667	0.5415	51.667	51.508	52.049	0					33	19	2	0	0	0	0.11517	1	12079	12079		36.044	3.7387	1	676260	+		23664	21258	13431	13432	29808	29808					0.15686884635897513
LLFPYILPPK	10	Unmodified	_LLFPYILPPK_					0	0	0		SNX14|p.L337*|1|0.35|ENSG00000135317|chr6:85547210-85547210|A/-|frameshift_variant;SNX14|p.K868Sfs*12|1|0.46|ENSG00000135317|chr6:85513850-85513850|T/-|frameshift_variant;nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	SNX14|p.L337*|1|0.35|ENSG00000135317|chr6:85547210-85547210|A/-|frameshift_variant	SNX14|p.L337*|1|0.35|ENSG00000135317|chr6:85547210-85547210|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.8176879882812	2	600.873185	1199.73182	0.45747	0.00027488	-0.62532	-0.00037574	-0.16786	-0.00010086	600.872612816012	76.552	0.75255	76.552	76.283	77.036	0					50	27	3	0	0	0	0.27772	1	19664	19664		26.884	12.978	1	212450			23665	3860	13432	13433	29809	29809					0.1399409999874024
LLFPYILPPK	10	Unmodified	_LLFPYILPPK_					0	0	0		SNX14|p.L337*|1|0.35|ENSG00000135317|chr6:85547210-85547210|A/-|frameshift_variant;SNX14|p.K868Sfs*12|1|0.46|ENSG00000135317|chr6:85513850-85513850|T/-|frameshift_variant;nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	SNX14|p.L337*|1|0.35|ENSG00000135317|chr6:85547210-85547210|A/-|frameshift_variant	SNX14|p.L337*|1|0.35|ENSG00000135317|chr6:85547210-85547210|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.800048828125	2	600.873185	1199.73182	0.33106	0.00019893	-0.55075	-0.00033093	-0.21968	-0.000132	600.8725602463749	76.524	0.68814	76.577	76.32	77.008	0.053413					48	24	3	0	0	0	0.27772	1	19657	19657		26.884	11.036	1	200630			23666	3860	13432	13433	29810	29810					0.1399409999874024
LLFPYILPPK	10	Unmodified	_LLFPYILPPK_					0	0	0		SNX14|p.L337*|1|0.35|ENSG00000135317|chr6:85547210-85547210|A/-|frameshift_variant;SNX14|p.K868Sfs*12|1|0.46|ENSG00000135317|chr6:85513850-85513850|T/-|frameshift_variant;nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	SNX14|p.L337*|1|0.35|ENSG00000135317|chr6:85547210-85547210|A/-|frameshift_variant	SNX14|p.L337*|1|0.35|ENSG00000135317|chr6:85547210-85547210|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8182983398438	2	600.873185	1199.73182	0.52691	0.0003166	-0.63328	-0.00038052	-0.10637	-6.3915E-05	601.3744340544088	76.533	0.64191	76.501	76.318	76.96	-0.031487					51	23	3	0	0	0	0.30079	1	19658	19658		20.454	4.6064	1	147640			23667	3860	13432	13433	29811	29811					0.1399409999874024
LLFQIGIIYW	10	Unmodified	_LLFQIGIIYW_					0	0	0			REV__nc|ENSG00000153956|P54289-4|CACNA2D1	REV__nc|ENSG00000153956|P54289-4|CACNA2D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3679809570312	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.52	1	113.52	113.02	114.02	0								0	0	0	0.38202	1	29483	29483		0.40072	0	1		+		23668	16639	13433	13434	29812	29812					0.10020911993365189
LLFQIGIIYW	10	Unmodified	_LLFQIGIIYW_					0	0	0			REV__nc|ENSG00000153956|P54289-4|CACNA2D1	REV__nc|ENSG00000153956|P54289-4|CACNA2D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3682250976562	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.79	1	115.79	115.29	116.29	0								0	0	0	0.38202	1	29996	29996		0.40072	0	1		+		23669	16639	13433	13434	29813	29813					0.10020911993365189
LLFQIGIIYW	10	Unmodified	_LLFQIGIIYW_					0	0	0			REV__nc|ENSG00000153956|P54289-4|CACNA2D1	REV__nc|ENSG00000153956|P54289-4|CACNA2D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3685913085938	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.78	1	116.78	116.28	117.28	0								0	0	0	0.38202	1	30218	30218		0.40072	0	1		+		23670	16639	13433	13434	29814	29814					0.10020911993365189
LLFQIGIIYW	10	Unmodified	_LLFQIGIIYW_					0	0	0			REV__nc|ENSG00000153956|P54289-4|CACNA2D1	REV__nc|ENSG00000153956|P54289-4|CACNA2D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.36865234375	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.02	1	117.02	116.52	117.52	0								0	0	0	0.38202	1	30277	30277		0.40072	0	1		+		23671	16639	13433	13434	29815	29815					0.10020911993365189
LLFQIGIIYW	10	Unmodified	_LLFQIGIIYW_					0	0	0			REV__nc|ENSG00000153956|P54289-4|CACNA2D1	REV__nc|ENSG00000153956|P54289-4|CACNA2D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3679809570312	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.41	1	117.41	116.91	117.91	0								0	0	0	0.38202	1	30366	30366		0.40072	0	1		+		23672	16639	13433	13434	29816	29816					0.10020911993365189
LLFQIGIIYW	10	Unmodified	_LLFQIGIIYW_					0	0	0			REV__nc|ENSG00000153956|P54289-4|CACNA2D1	REV__nc|ENSG00000153956|P54289-4|CACNA2D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3684692382812	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.8	1	119.8	119.3	120.3	0								0	0	0	0.38202	1	30891	30891		0.40072	0	1		+		23673	16639	13433	13434	29817	29817					0.10020911993365189
LLFQIGIIYW	10	Unmodified	_LLFQIGIIYW_					0	0	0			REV__nc|ENSG00000153956|P54289-4|CACNA2D1	REV__nc|ENSG00000153956|P54289-4|CACNA2D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3680419921875	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.65	1	105.65	105.15	106.15	-0.0027847								0	0	0	0.38126	1	27984	27984		1.6526	0.17072	1		+		23674	16639	13433	13434	29818	29818					0.10020911993365189
LLFRPLRPHF	10	Unmodified	_LLFRPLRPHF_					0	0	0		ENST00000436079.1_1_22:21356561-21356627:+|nuORF	ENST00000436079.1_1_22:21356561-21356627:+|nuORF	ENST00000436079.1_1_22:21356561-21356627:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.5957946777344	3	432.596025	1294.76625	0.013945	6.0325E-06	-0.28086	-0.0001215	-0.26692	-0.00011547	432.5958252456744	41.806	1.509	41.896	41.738	43.247	0.090248					144	56	3	0	0	0	0.40943	1	9265	9265		1.7423	0.63252	1	2519600			23675	10518	13434	13435	29819	29819					0.13065360930204406
LLFSAASVAGP	11	Unmodified	_LLFSAASVAGP_					0	0	0		ENST00000535977.5_1_16:678381-678519:+|nuORF	ENST00000535977.5_1_16:678381-678519:+|nuORF	ENST00000535977.5_1_16:678381-678519:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3055419921875	2	516.78985	1031.56515	0.6128	0.00031669	0.78028	0.00040324	1.3931	0.00071993	516.7901410572969	60.61	0.60835	60.707	60.369	60.978	0.096985					32	21	2	0	0	0	0.31824	1	14767	14767		13.906	7.1829	1	315830			23676	11679	13435	13436	29820	29820					0.05062627103052364
LLFSLLNMV	9	Unmodified	_LLFSLLNMV_					0	0	0			REV__nc|ENSG00000165240|Q04656-3|ATP7A	REV__nc|ENSG00000165240|Q04656-3|ATP7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2688598632812	2	525.306821	1048.59909	0.82183	0.00043171	3.6886	0.0019377	4.5104	0.0023694	525.3086906284256	77.959	0.79883	78.017	77.316	78.115	0.058151					48	28	2	0	0	0	0.22596	1	20002	20002		21.747	2.3076	1	221510	+		23677	23071	13436	13437	29821	29821					0.07673332270428546
LLFSLRSEF	9	Unmodified	_LLFSLRSEF_					0	0	0			REV__ENST00000481600.5_1_10:127417653-127452038:+|nuORF	REV__ENST00000481600.5_1_10:127417653-127452038:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2969970703125	2	556.310949	1110.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.98	1	100.98	100.48	101.48	-0.0054703								0	0	0	0.24522	1	26981	26981		7.9102	2.1497	1		+		23678	14574	13437	13438	29822	29822					0.05646602511410492
LLFTVCLPL	9	Unmodified	_LLFTVCLPL_					0	0	0			REV__ENSG00000181045|ENST00000361193|SLC26A11	REV__ENSG00000181045|ENST00000361193|SLC26A11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.80377197265625	2	509.803914	1017.59328	0.2354	0.00012001	-0.11861	-6.0466E-05	0.1168	5.9543E-05	509.80377964624006	74.358	2.6692	74.41	72.68	75.349	0.052361					188	95	3	0	0	0	0.26879	2	19197	19197;19316		13.508	13.508	1	2312800	+		23679	18134	13438	13439	29823;29824	29823					0.08518233758763927
LLFTVCLPL	9	Unmodified	_LLFTVCLPL_					0	0	0			REV__ENSG00000181045|ENST00000361193|SLC26A11	REV__ENSG00000181045|ENST00000361193|SLC26A11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8038330078125	2	509.803914	1017.59328	0.36866	0.00018795	-0.12705	-6.4768E-05	0.24162	0.00012318	509.803738168651	74.265	2.9138	74.235	72.454	75.367	-0.030655					196	105	3	0	0	0	0.26879	1	19245	19245		13.508	0	1	2074000	+		23680	18134	13438	13439	29825	29825					0.08518233758763927
LLFVCCIID	9	Unmodified	_LLFVCCIID_					0	0	0			REV__nc|ENSG00000129353|Q8IWA5-3|SLC44A2	REV__nc|ENSG00000129353|Q8IWA5-3|SLC44A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2581176757812	2	519.771757	1037.52896	0.50371	0.00026181	0.64909	0.00033738	1.1528	0.0005992	520.2744744622523	64.599	0.39205	64.589	64.443	64.835	-0.0095367					17	13	2	0	0	0	0.23783	1	16095	16095		12.532	0	1	120690	+		23681	15413	13439	13440	29826	29826					0.01169710610315633
LLFVFVLRC	9	Unmodified	_LLFVFVLRC_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.330322265625	2	555.33063	1108.64671	0.15939	8.8517E-05	-0.41993	-0.0002332	-0.26054	-0.00014469	555.3305460491634	23.391	0.43817	23.303	23.077	23.515	-0.087608					22	15	2	0	0	0	0.34681	1	3456	3456		1.8442	0.19162	1	78298			23682	5116	13440	13441	29827	29827					0.09673031261309006
LLFVFVLRC	9	Unmodified	_LLFVFVLRC_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3307495117188	2	555.33063	1108.64671	0.2494	0.0001385	0.10946	6.0789E-05	0.35886	0.00019929	555.330705051566	23.386	0.41888	23.342	23.167	23.586	-0.044867					29	14	3	0	0	0	0.34681	1	3447	3447		1.8442	0.19162	1	82291			23683	5116	13440	13441	29828	29828					0.09673031261309006
LLFVSKRESF	10	Unmodified	_LLFVSKRESF_					0	0	0			REV__ENST00000366525.8_2_1:245025904-245026177:-|nuORF	REV__ENST00000366525.8_2_1:245025904-245026177:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.90460205078125	3	409.236163	1224.68666	0.13042	5.3371E-05	-4.2755	-0.0017497	-4.1451	-0.0016963	409.23440437062686	37.22	0.32253	37.307	37.09	37.412	0.087406					17	11	2	0	0	0	0.31911	1	7618	7618		1.9064	0.71303	1	94286	+		23684	20294	13441	13442	29829	29829					0.08330249465552697
LLGALPVSL	9	Unmodified	_LLGALPVSL_					0	0	0		ENST00000331163.10_1_22:39631853-39640539:-|nuORF	ENST00000331163.10_1_22:39631853-39640539:-|nuORF	ENST00000331163.10_1_22:39631853-39640539:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.786865234375	2	441.786579	881.558604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.987	1	74.039	73.539	74.539	0.052361								0	0	0	0.21357	1	18929	18929		18.135	0	1				23685	9444	13442	13443	29830	29830					0.11308733942325944
LLGCTVTLSI	10	Unmodified	_LLGCTVTLSI_					0	0	0			REV__ENSG00000185716|ENST00000542527|MOSMO	REV__ENSG00000185716|ENST00000542527|MOSMO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.80377197265625	2	510.293911	1018.57327	0.20635	0.0001053	-3.4275	-0.001749	-3.2212	-0.0016437	510.2920293550818	75.523	0.58571	75.523	75.154	75.739	0					24	20	2	0	0	0	0.31039	1	19423	19423		13.042	2.2185	1	79428	+		23686	18402	13443	13444	29831	29831					0.06472438028174565
LLGDPTCCVL	10	Unmodified	_LLGDPTCCVL_					0	0	0		nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000083807|ENST00000263093|SLC27A5	nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.2567138671875	2	517.256471	1032.49839	0.42135	0.00021794	-0.60502	-0.00031295	-0.18367	-9.5007E-05	517.2563298048102	46.642	1.0792	46.694	46.326	47.405	0.052574					90	39	4	0	0	0	0.35558	1	10607	10607		11.64	1.5664	1	1342300			23687	1229	13444	13445	29832	29832					-0.016560677747293084
LLGEHIQLL	9	Unmodified	_LLGEHIQLL_					0	0	0			REV__ENST00000414673.5_1_17:16734454-16736059:-|nuORF	REV__ENST00000414673.5_1_17:16734454-16736059:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7877197265625	2	518.313492	1034.61243	-0.031718	-1.644E-05	0.73436	0.00038063	0.70265	0.00036419	518.3144231849503	65.064	0.10181	65.053	64.972	65.074	-0.011337					5	3	2	0	0	0	0.25066	1	16188	16188		3.9444	0	1	63734	+		23688	20802	13445	13446	29833	29833					0.09650906374054102
LLGFHILG	8	Unmodified	_LLGFHILG_					0	0	0		ENST00000313143.7_1_3:183890109-183890160:+|nuORF	ENST00000313143.7_1_3:183890109-183890160:+|nuORF	ENST00000313143.7_1_3:183890109-183890160:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7794189453125	2	435.265813	868.517074	-1.5523	-0.00067565	-3.9525	-0.0017204	-5.5047	-0.002396	435.26412120949703	34.709	0.88106	34.784	34.353	35.234	0.075306					45	31	2	0	0	0	0.33618	1	6935	6935		11.114	0	1	190600			23689	9327	13446	13447	29834	29834					0.07755597973675776
LLGGGLDSLL	10	Unmodified	_LLGGGLDSLL_					0	0	0		ENSG00000006125|ENST00000610402|AP2B1	ENSG00000006125|ENST00000610402|AP2B1	ENSG00000006125|ENST00000610402|AP2B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.29742431640625	2	479.2844	956.554247	0.22025	0.00010556	0.072198	3.4603E-05	0.29245	0.00014017	479.2843337578549	62.825	0.64713	62.816	62.57	63.217	-0.0085564					53	23	4	0	0	0	0.2593	1	15536	15536		25.399	0	1	802750			23690	355	13447	13448	29835	29835					0.07423224728779587
LLGHRQLVPTE	11	Unmodified	_LLGHRQLVPTE_					0	0	0		CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	631.3638305664062	2	631.864412	1261.71427	0.53643	0.00033895	-2.1448	-0.0013552	-1.6084	-0.0010163	631.8629532662873	84.6	0.16044	84.681	84.564	84.724	0.080879					7	5	2	0	0	0	0.33037	1	22145	22145		7.609	1.4032	1	74940		+	23691	200	13448	13449	29836	29836					0.09388152725796317
LLGHRQLVPTE	11	Unmodified	_LLGHRQLVPTE_					0	0	0		CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	CON__ENSEMBL:ENSBTAP00000016285	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	631.864412	1261.71427	0.61853	0.00039083	-1.9052	-0.0012038	-1.2867	-0.00081301	631.863190286677	84.71	0.10606	84.697	84.604	84.71	-0.01284	0.0079761	4.5935E-05	NaN	7.609	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87728		+	23692	200	13448	13449							0.09388152725796317
LLGIAQINLA	10	Unmodified	_LLGIAQINLA_					0	0	0		ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	ENSG00000047644|ENST00000380861|WWC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.29248046875	2	513.321317	1024.62808	0.3397	0.00017437	-0.53329	-0.00027375	-0.19359	-9.9376E-05	513.320878961178	63.173	0.48682	63.173	62.956	63.443	0					28	17	2	0	0	0	0.31926	1	15582	15582		2.9952	0	1	249620			23693	636	13449	13450	29837	29837					0.11675192891107145
LLGIITKKDIL	11	Unmodified	_LLGIITKKDIL_					0	0	0		nc|ENSG00000109572|P51790-4|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3	nc|ENSG00000109572|P51790-4|CLCN3	nc|ENSG00000109572|P51790-4|CLCN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.60797119140625	3	409.607596	1225.80096	-0.012423	-5.0885E-06	0.82565	0.00033819	0.81323	0.00033311	409.60841977764244	52.372	3.9108	52.372	51.997	55.907	0					445	143	6	0	0	0	0.36161	8	12520	12231;12520;12569;12617;12795;12936;12996;13079		16.275	0	1	99351000			23694	2259	13450	13451	29838;29839;29840;29841;29842;29843;29844;29845	29839					0.19709139227666128
LLGIITKKDIL	11	Unmodified	_LLGIITKKDIL_					0	0	0		nc|ENSG00000109572|P51790-4|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3	nc|ENSG00000109572|P51790-4|CLCN3	nc|ENSG00000109572|P51790-4|CLCN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.6079406738281	3	409.607596	1225.80096	0.16529	6.7705E-05	0.70603	0.0002892	0.87132	0.0003569	409.6083823483185	52.347	3.1865	52.397	52.009	55.196	0.050575					383	118	5	0	0	0	0.31508	5	12496	12496;12784;12934;13033;13080		20.871	0	1	96925000			23695	2259	13450	13451	29846;29847;29848;29849;29850	29846					0.19709139227666128
LLGIITKKDIL	11	Unmodified	_LLGIITKKDIL_					0	0	0		nc|ENSG00000109572|P51790-4|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3	nc|ENSG00000109572|P51790-4|CLCN3	nc|ENSG00000109572|P51790-4|CLCN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.6080017089844	3	409.607596	1225.80096	0.43349	0.00017756	0.45951	0.00018822	0.89299	0.00036578	409.60777519612185	55.976	1.1855	56.046	55.216	56.402	0.070885					75	43	2	0	0	0	0.43513	1	13220	13220		6.6235	0	1	558250			23696	2259	13450	13451	29851	29851					0.19709139227666128
LLGIITKKDIL	11	Unmodified	_LLGIITKKDIL_					0	0	0		nc|ENSG00000109572|P51790-4|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3	nc|ENSG00000109572|P51790-4|CLCN3	nc|ENSG00000109572|P51790-4|CLCN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2266540527344	3	409.607596	1225.80096	0.21516	8.8131E-05	0.56571	0.00023172	0.78087	0.00031985	409.6078009040479	63.456	1.1655	63.552	63.2	64.366	0.095722					68	41	2	0	0	0	0.3325	1	15803	15803		4.1166	4.1166	1	172260			23697	2259	13450	13451	29852	29852					0.19709139227666128
LLGIITKKDIL	11	Unmodified	_LLGIITKKDIL_					0	0	0		nc|ENSG00000109572|P51790-4|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3	nc|ENSG00000109572|P51790-4|CLCN3	nc|ENSG00000109572|P51790-4|CLCN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.6084899902344	3	409.607596	1225.80096	0.011884	4.8677E-06	0.84608	0.00034656	0.85796	0.00035143	409.60840964174287	52.584	3.3326	52.583	52.194	55.526	-0.00080872					397	122	6	0	0	0	0.31508	6	12408	12408;12608;12659;12711;12922;13085		20.871	0	1	92153000			23698	2259	13450	13451	29853;29854;29855;29856;29857;29858	29853					0.19709139227666128
LLGIMHIN	8	Unmodified	_LLGIMHIN_					0	0	0			REV__ENSG00000181927|ENST00000641760|OR4P4	REV__ENSG00000181927|ENST00000641760|OR4P4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2774963378906	2	455.762581	909.510608	0.54557	0.00024865	2.0207	0.00092097	2.5663	0.0011696	455.76308107481515	77.792	0.28783	77.792	77.691	77.979	0					14	10	2	0	0	0	0.34147	1	20151	20151		6.3541	0	1	50338	+		23699	18170	13451	13452	29859	29859					0.05223336750623275
LLGKQQVTL	9	Unmodified	_LLGKQQVTL_					0	0	0		nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8238525390625	2	500.313492	998.612431	0.41696	0.00020861	0.2641	0.00013214	0.68107	0.00034075	500.31355285971836	65.544	0.60321	65.544	65.268	65.871	0					41	21	3	0	0	0	0.16284	1	16339	16339		30.637	1.555	1	486670			23700	12719	13452	13453	29860	29860					0.1130690637405678
LLGPCLLVS	9	Unmodified	_LLGPCLLVS_					0	0	0		ENST00000377735.7_1_19:46286459-46286786:-|nuORF	ENST00000377735.7_1_19:46286459-46286786:-|nuORF	ENST00000377735.7_1_19:46286459-46286786:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2637634277344	2	457.772614	913.530675	-0.025108	-1.1494E-05	1.8543	0.00084887	1.8292	0.00083737	457.7733651794889	69.864	0.40923	69.864	69.537	69.946	0					19	14	2	0	0	0	0.25526	1	17638	17638		7.9102	0	1	111240			23701	9942	13453	13454	29861	29861					0.07045087690596574
LLGSFEDVLI	10	Unmodified	_LLGSFEDVLI_					0	0	0		ENST00000527763.5_1_11:829331-831706:+|nuORF;ENST00000528694.1_1_11:829854-830133:+|nuORF;nc|ENSG00000177685|Q8N4Y2-2|CRACR2B;ENST00000530688.5_1_11:829331-830866:+|nuORF;nc|ENSG00000177685|Q8N4Y2-3|CRACR2B;ENSG00000177685|ENST00000525077|CRACR2B	ENST00000527763.5_1_11:829331-831706:+|nuORF	ENST00000527763.5_1_11:829331-831706:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.830322265625	2	553.310615	1104.60668	0.45825	0.00025355	0.0017242	9.5403E-07	0.45997	0.00025451	553.3105257703046	82.773	1.3825	82.752	82.45	83.833	-0.020584					139	56	4	0	0	0	0.3641	1	21529	21529		10.074	0.6908	1	2036000			23702	11572	13454	13455	29862	29862					0.05855763071735964
LLGSHGLL	8	Unmodified	_LLGSHGLL_					0	0	0		nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2600402832031	2	405.247621	808.480688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.988	1	71.988	71.488	72.488	0								0	0	0	0.34752	1	18328	18328		15.768	0	1				23703	1677	13455	13456	29863	29863					0.06878721076964212
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.3876953125	2	626.392805	1250.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.42	1	103.42	102.92	103.92	0								0	0	0	0.36335	1	27478	27478		5.2969	1.7004	1		+		23704	19922	13456	13457	29864	29864					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.3930053710938	2	626.392805	1250.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.42	1	103.42	102.92	103.92	0								0	0	0	0.36335	1	27480	27480		5.2969	0	1		+		23705	19922	13456	13457	29865	29865					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.3908081054688	2	626.392805	1250.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.45	1	103.45	102.95	103.95	-0.0011139								0	0	0	0.36335	1	27519	27519		5.2969	0	1		+		23706	19922	13456	13457	29866	29866					0.15570200282309088
LLGSILHDKKK	11	Unmodified	_LLGSILHDKKK_					0	0	0			REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	REV__ENST00000313833.4_1_14:55817358-55817442:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.3926391601562	2	626.392805	1250.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.51	1	103.51	103.01	104.01	-0.0011139								0	0	0	0.36335	1	27532	27532		5.2969	1.7004	1		+		23707	19922	13456	13457	29867	29867					0.15570200282309088
LLGSLAQVT	9	Unmodified	_LLGSLAQVT_					0	0	0			REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.9327392578125	2	451.271293	900.528032	0.27278	0.0001231	0.2969	0.00013398	0.56969	0.00025708	451.27292508252776	88.542	0.60724	88.539	88.192	88.799	-0.0028381					40	27	2	0	0	0	0.25622	1	23418	23418		7.2892	0	1	105110	+		23708	14456	13457	13458	29868	29868					0.07378955557294375
LLGSQRRIF	9	Unmodified	_LLGSQRRIF_					0	0	0		ENSG00000173706|ENST00000311127|HEG1	ENSG00000173706|ENST00000311127|HEG1	ENSG00000173706|ENST00000311127|HEG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3170776367188	2	545.330008	1088.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.429	1	92.519	92.019	93.019	0.089195								0	0	0	0.23367	1	24578	24578		11.64	0.81637	1				23709	6744	13458	13459	29869	29869					0.10468533216749165
LLGSSLRFVVF	11	Unmodified	_LLGSSLRFVVF_					0	0	0			REV__ENST00000308086.2_1_12:72057485-72057791:+|nuORF	REV__ENST00000308086.2_1_12:72057485-72057791:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.3706665039062	2	619.368798	1236.72304	0.11984	7.4222E-05	1.672	0.0010356	1.7918	0.0011098	619.3707405203077	91.712	1.9109	91.803	91.166	93.077	0.090675					275	137	3	0	0	0	0.42762	3	24316	24273;24316;24404		7.609	3.4194	1	768030	+		23710	19876	13459	13460	29870;29871;29872	29871					0.11415126362271621
LLGSSLRFVVF	11	Unmodified	_LLGSSLRFVVF_					0	0	0			REV__ENST00000308086.2_1_12:72057485-72057791:+|nuORF	REV__ENST00000308086.2_1_12:72057485-72057791:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.3707885742188	2	619.368798	1236.72304	0.37078	0.00022965	1.7351	0.0010747	2.1059	0.0013043	619.370569418945	91.757	1.4647	91.757	91.303	92.768	0.00046539					206	95	3	0	0	0	0.40332	2	24357	24357;24453		10.8	2.644	1	1022300	+		23711	19876	13459	13460	29873;29874	29873					0.11415126362271621
LLGSSLVALL	10	Unmodified	_LLGSSLVALL_					0	0	0		ENSG00000110446|ENST00000227880|SLC15A3	ENSG00000110446|ENST00000227880|SLC15A3	ENSG00000110446|ENST00000227880|SLC15A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.318359375	2	493.318243	984.621933	0.41168	0.00020309	0.28919	0.00014266	0.70087	0.00034575	493.3182629437256	68.038	1.1365	68.117	67.834	68.97	0.078041					99	41	4	0	0	0	0.069364	1	17181	17181		54.774	2.5052	1	3595300			23712	2313	13460	13461	29875	29875					0.12900674659567812
LLGSVVFLI	9	Unmodified	_LLGSVVFLI_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.8099060058594	2	480.810054	959.605554	0.2733	0.00013141	-0.39027	-0.00018765	-0.11697	-5.624E-05	480.80969667835325	57.972	0.57519	58.058	57.812	58.387	0.085617					41	20	3	0	0	0	0.15464	1	14017	14017		38.151	0	1	407650	+		23713	15470	13461	13462	29876	29876					0.12413593493488406
LLGSVVFLI	9	Unmodified	_LLGSVVFLI_					0	0	0			REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7	REV__nc|ENSG00000130653|Q6ZV29-3|PNPLA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7974548339844	2	480.810054	959.605554	0.45723	0.00021984	-0.47747	-0.00022957	-0.020246	-9.7344E-06	480.8096680991494	58.127	0.50661	58.11	57.848	58.355	-0.0172					40	18	3	0	0	0	0.18943	1	14028	14028		30.225	0	1	324120	+		23714	15470	13461	13462	29877	29877					0.12413593493488406
LLGSYHPGVF	10	Unmodified	_LLGSYHPGVF_					0	0	0		nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4;ENST00000523568.1_7:102228019-102246337:-|nuORF;ENST00000495352.5_1_7:102124102-102135092:-|nuORF;ENST00000522223.1_7:102223281-102234330:-|nuORF	nc|ENSG00000105808|O43374-2|RASA4	nc|ENSG00000105808|O43374-2|RASA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2738647460938	2	545.290017	1088.56548	0.54061	0.00029479	0.35974	0.00019616	0.90035	0.00049095	545.2902081117902	52.821	0.91806	52.821	52.55	53.468	0					72	33	3	0	0	0	0.24715	1	12387	12387		26.884	2.8631	1	1678200			23715	2026	13462	13463	29878	29878					0.024740468228856116
LLGTGRFAATV	11	Unmodified	_LLGTGRFAATV_					0	0	0		ENST00000607455.1_1_10:31607868-31607988:-|nuORF	ENST00000607455.1_1_10:31607868-31607988:-|nuORF	ENST00000607455.1_1_10:31607868-31607988:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.303466796875	2	553.321848	1104.62914	0.36904	0.0002042	0.54072	0.00029919	0.90976	0.00050339	553.322136607598	28.876	0.50609	28.876	28.611	29.117	0					32	17	2	0	0	0	0.40332	1	5162	5162		10.8	1.4164	1	383930			23716	12311	13463	13464	29879	29879					0.08101407259982807
LLGTLLFKL	9	Unmodified	_LLGTLLFKL_					0	0	0			REV__ENST00000497136.6_1_10:122626245-122665534:+|nuORF	REV__ENST00000497136.6_1_10:122626245-122665534:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.33929443359375	2	509.338978	1016.6634	0.33722	0.00017176	-0.086774	-4.4197E-05	0.25044	0.00012756	509.3390352348149	67.451	3.191	67.529	67.094	70.285	0.078041					297	114	5	0	0	0	0.18803	1	17257	17257		25.399	0	1	16788000	+		23717	15071	13464	13465	29880	29880					0.1557385541889289
LLGTLLGSML	10	Unmodified	_LLGTLLGSML_					0	0	0			REV__ENSG00000187010|ENST00000328664|RHD	REV__ENSG00000187010|ENST00000328664|RHD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3389892578125	2	509.304278	1016.594	0.32224	0.00016412	0.18946	9.6491E-05	0.5117	0.00026061	509.30422174077154	67.877	1.1586	67.877	67.25	68.408	0					83	41	3	0	0	0	0.31165	1	17217	17217		15.847	15.847	1	635830	+		23718	18482	13465	13466	29881	29881					0.08637028407838443
LLHALSLVT	9	Unmodified	_LLHALSLVT_					0	0	0		nc|ENSG00000185433|P58513|LINC00158	nc|ENSG00000185433|P58513|LINC00158	nc|ENSG00000185433|P58513|LINC00158	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.3025207519531	2	483.80276	965.590967	0.036995	1.7898E-05	-1.2608	-0.00060998	-1.2238	-0.00059208	483.80286366420125	64.988	1.2033	64.988	64.591	65.795	0					136	43	4	0	0	0	0.26879	1	16124	16124		13.508	0	1	2305400			23719	12878	13466	13467	29882	29882					0.10679521345332432
LLHCLPPSK	9	Carbamidomethyl (C)	_LLHC(Carbamidomethyl (C))LPPSK_	LLHC(1)LPPSK		LLHC(48)LPPSK		0	1	0		ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3004150390625	2	532.799694	1063.58484	0.51973	0.00027691	-4.2675	-0.0022737	-3.7478	-0.0019968	533.299843314079	56.752	1.2095	56.83	56.221	57.43	0.078674					130	44	5	0	0	0	0.063853	1	13610	13610		47.749	14.963	1	2698800			23720	9692	13467	13468	29883	29883	8				0.05558679842147285
LLHDVVALL	9	Unmodified	_LLHDVVALL_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7742614746094	2	496.810585	991.606617	0.54107	0.00026881	-0.6175	-0.00030678	-0.076436	-3.7974E-05	496.8101644701702	63.971	0.51199	64.064	63.822	64.334	0.092884					34	18	2	0	0	0	0.25066	1	15847	15847		11.64	0	1	218970	+		23721	14758	13468	13469	29884	29884					0.1104780786236006
LLHFPFLV	8	Unmodified	_LLHFPFLV_					0	0	0			REV__ENST00000452673.6_1_5:179157214-179157430:+|nuORF	REV__ENST00000452673.6_1_5:179157214-179157430:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7346496582031	2	493.297114	984.579674	0.41086	0.00020267	0.26274	0.00012961	0.6736	0.00033228	493.29728914555324	72.783	0.81757	72.837	72.601	73.419	0.053841					45	29	2	0	0	0	0.26384	1	18545	18545		32.454	5.57	1	243520	+		23722	21129	13469	13470	29885	29885					0.08676744041849815
LLHFPFLV	8	Unmodified	_LLHFPFLV_					0	0	0			REV__ENST00000452673.6_1_5:179157214-179157430:+|nuORF	REV__ENST00000452673.6_1_5:179157214-179157430:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7347106933594	2	493.297114	984.579674	0.49766	0.0002455	-0.013597	-6.7073E-06	0.48407	0.00023879	493.2971774077679	72.86	0.72469	72.831	72.542	73.266	-0.029305					49	25	3	0	0	0	0.26384	1	18573	18573		32.454	8.2437	1	273940	+		23723	21129	13469	13470	29886	29886					0.08676744041849815
LLHFPLHTKL	10	Unmodified	_LLHFPLHTKL_					0	0	0			REV__ENSG00000198075|ENST00000272452|SULT1C4	REV__ENSG00000198075|ENST00000272452|SULT1C4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.91741943359375	3	406.916764	1217.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.2	1	103.2	102.7	103.7	-0.0011139								0	0	0	0.3808	1	27464	27464		0.77653	0.14971	1		+		23724	18795	13470	13471	29887	29887					0.12830849944725742
LLHGPDLPS	9	Unmodified	_LLHGPDLPS_					0	0	0		nc|ENSG00000243137|Q00888-2|PSG4	nc|ENSG00000243137|Q00888-2|PSG4	nc|ENSG00000243137|Q00888-2|PSG4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.7735290527344	2	474.761092	947.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.545	1	89.544	89.044	90.044	-0.00080872								0	0	0	0.22789	1	23688	23688		13.508	4.1604	1				23725	12968	13471	13472	29888	29888					0.031777848974684275
LLHGTIIL	8	Unmodified	_LLHGTIIL_					0	0	0		nc|ENSG00000143363|Q86TP1-2|PRUNE1;ENSG00000143363|ENST00000271620|PRUNE1	nc|ENSG00000143363|Q86TP1-2|PRUNE1	nc|ENSG00000143363|Q86TP1-2|PRUNE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.7528076171875	2	440.286746	878.558939	0.4151	0.00018276	-0.48413	-0.00021315	-0.069029	-3.0392E-05	440.28639714277165	58.624	0.41535	58.61	58.416	58.831	-0.014267					16	14	2	0	0	0	0.30749	1	14235	14235		28.173	0	1	176450			23726	4503	13472	13473	29889	29889					0.11480153662182602
LLHHHPKKQ	9	Unmodified	_LLHHHPKKQ_					0	0	0			REV__KLHL13|p.K618Rfs*48|1|0.16|ENSG00000003096|chrX:117899023-117899023|T/-|frameshift_variant	REV__KLHL13|p.K618Rfs*48|1|0.16|ENSG00000003096|chrX:117899023-117899023|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3160400390625	2	569.335624	1136.6567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.059	1	11.963	11.463	12.463	-0.096607								0	0	0	0.26704	1	16	16		0.6015	0.076735	1		+		23727	22774	13473	13474	29890	29890					0.09383355310887964
LLHHHPPPF	9	Unmodified	_LLHHHPPPF_					0	0	0		ENST00000495180.1_1_3:111632376-111632535:+|nuORF	ENST00000495180.1_1_3:111632376-111632535:+|nuORF	ENST00000495180.1_1_3:111632376-111632535:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7986450195312	2	547.798343	1093.58213	0.48559	0.00026601	-0.69984	-0.00038337	-0.21425	-0.00011737	547.7975744968578	58.723	1.7191	58.723	57.634	59.353	0					126	60	4	0	0	0	0.16905	1	14258	14258		28.173	3.1823	1	956340			23728	11215	13474	13475	29891	29891					0.03908592499487895
LLHHVLKHF	9	Unmodified	_LLHHVLKHF_					0	0	0		ENSG00000179142|ENST00000323110|CYP11B2	ENSG00000179142|ENST00000323110|CYP11B2	ENSG00000179142|ENST00000323110|CYP11B2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3435668945312	2	572.342918	1142.67128	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.16	1	119.16	118.66	119.66	0								0	0	0	0.2672	1	30758	30758		0.52476	0	1				23729	7106	13475	13476	29892	29892					0.10565427459027887
LLHKEILGCS	10	Unmodified	_LLHKEILGCS_					0	0	0		ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3349609375	2	556.810259	1111.60597	0.67044	0.00037331	-1.7682	-0.00098455	-1.0978	-0.00061124	556.8094866458157	51.003	0.56413	51.003	50.544	51.108	0					46	20	3	0	0	0	0.31237	1	11771	11771		4.5289	0	1	366700			23730	7589	13476	13477	29893	29893					0.0546264515103303
LLHKEILGCS	10	Unmodified	_LLHKEILGCS_					0	0	0		ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3350219726562	2	556.810259	1111.60597	0.80277	0.00044699	-2.2316	-0.0012426	-1.4288	-0.00079558	556.8090605155932	50.632	0.32106	50.677	50.549	50.871	0.044891					21	11	2	0	0	0	0.31515	1	11744	11744		8.1555	1.4324	1	215110			23731	7589	13476	13477	29894	29894					0.0546264515103303
LLHLDRSL	8	Unmodified	_LLHLDRSL_					0	0	0			REV__ENST00000535813.5_1_11:67231974-67234980:-|nuORF	REV__ENST00000535813.5_1_11:67231974-67234980:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7903137207031	2	483.790184	965.565815	0.47028	0.00022752	-0.22922	-0.0001109	0.24105	0.00011662	483.78998475280866	40.039	0.59001	40.131	39.858	40.448	0.09267					36	20	2	0	0	0	0.3671	1	8527	8527		23.148	0	1	530730	+		23732	19875	13477	13478	29895	29895					0.08165466542754984
LLHLDYNF	8	Unmodified	_LLHLDYNF_					0	0	0		ENSG00000151962|ENST00000281722|RBM46	ENSG00000151962|ENST00000281722|RBM46	ENSG00000151962|ENST00000281722|RBM46	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.32421875	2	517.768917	1033.52328	-0.95746	-0.00049574	-3.267	-0.0016915	-4.2244	-0.0021873	517.7668574875507	34.994	0.33033	34.994	34.839	35.17	0					15	11	2	0	0	0	0.34185	1	6971	6971		5.7604	0	1	74528			23733	4995	13478	13479	29896	29896					0.007860714144953818
LLHLFRHF	8	Unmodified	_LLHLFRHF_					0	0	0			REV__ENST00000540306.5_2_17:41603965-41604127:+|nuORF	REV__ENST00000540306.5_2_17:41603965-41604127:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.3054809570312	2	541.816536	1081.61852	0.39099	0.00021185	-0.75938	-0.00041144	-0.36839	-0.0001996	541.8160714403981	73.341	0.55338	73.395	73.172	73.725	0.053833					38	19	4	0	0	0	0.33995	1	18822	18822		2.5775	0	1	227890	+		23734	22111	13479	13480	29897	29897					0.08097469396216184
LLHLLSLGLWG	11	Unmodified	_LLHLLSLGLWG_					0	0	0		ENST00000532554.5_1_11:45935680-45939362:-|nuORF;ENSG00000121680|ENST00000378750|PEX16;nc|ENSG00000121680|Q9Y5Y5-2|PEX16	ENST00000532554.5_1_11:45935680-45939362:-|nuORF	ENST00000532554.5_1_11:45935680-45939362:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.3561401367188	2	611.371341	1220.72813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.951	1	82.931	82.431	83.431	-0.020584								0	0	0	0.37252	1	21664	21664		3.2813	0.28607	1				23735	3002	13480	13481	29898	29898					0.12659430224880452
LLHLRRTFPV	10	Unmodified	_LLHLRRTFPV_					0	0	0			REV__ZSWIM4|p.G103R|1|0.14|ENSG00000132003|chr19:13799873-13799873|G/A|missense_variant	REV__ZSWIM4|p.G103R|1|0.14|ENSG00000132003|chr19:13799873-13799873|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.8888549804688	2	626.387857	1250.76116	-0.19685	-0.00012331	2.2997	0.0014405	2.1028	0.0013172	626.390739892774	103.2	0.63878	103.2	102.85	103.49	0.0082703					150	92	2	0	0	0	0.39935	1	27404	27404		3.5965	0.60125	1	18562000	+		23736	23367	13481	13482	29899	29899					0.1458105706758488
LLHLSLQEL	9	Unmodified	_LLHLSLQEL_					0	0	0			REV__ENST00000476202.5_3_3:145924377-145968784:-|nuORF	REV__ENST00000476202.5_3_3:145924377-145968784:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.30859375	2	533.318774	1064.623	0.52542	0.00028021	0.75966	0.00040514	1.2851	0.00068535	533.3191044796649	62.236	0.66675	62.236	62.022	62.689	0					42	24	2	0	0	0	0.22061	1	15291	15291		24.021	13.947	1	539250	+		23737	21202	13482	13483	29900	29900					0.09326889028443475
LLHMFFFY	8	Unmodified	_LLHMFFFY_					0	0	0		ENST00000356884.10_1_9:95475360-95475549:-|nuORF	ENST00000356884.10_1_9:95475360-95475549:-|nuORF	ENST00000356884.10_1_9:95475360-95475549:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.34033203125	2	559.280606	1116.54666	0.090441	5.0582E-05	-1.0791	-0.00060351	-0.98864	-0.00055292	559.2802948444569	31.16	0.48906	31.202	30.883	31.372	0.042364					27	17	2	0	0	0	0.34297	1	5794	5794		6.3541	1.5981	1	68496			23738	9626	13483	13484	29901	29901					-0.006952060724870535
LLHMWVAL	8	Unmodified	_LLHMWVAL_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.3206481933594	2	491.780773	981.546994	0.37825	0.00018601	0.51998	0.00025572	0.89823	0.00044173	491.78180294323425	70.529	0.80088	70.59	70.268	71.069	0.060776					45	28	2	0	0	0	0.33618	1	17962	17962		17.087	2.5049	1	221150			23739	2160	13484	13485	29902	29902					0.05548213647330158
LLHMWVAL	8	Unmodified	_LLHMWVAL_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.3207702636719	2	491.780773	981.546994	0.40005	0.00019674	0.70509	0.00034675	1.1051	0.00054349	491.7818127703775	70.59	0.95596	70.565	70.015	70.971	-0.024864					49	33	2	0	0	0	0.34147	1	17976	17976		11.114	0.93107	1	299840			23740	2160	13484	13485	29903	29903					0.05548213647330158
LLHPYSRL	8	Unmodified	_LLHPYSRL_					0	0	0		nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7905578613281	2	499.792727	997.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.08	1	32.123	31.623	32.623	0.042366								0	0	0	0.34957	1	6072	6072		14.838	0.93222	1				23741	13023	13485	13486	29904	29904					0.07201770405367824
LLHVLEED	8	Unmodified	_LLHVLEED_					0	0	0			REV__nc|ENSG00000149823|Q9UID3-2|VPS51	REV__nc|ENSG00000149823|Q9UID3-2|VPS51	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.302490234375	2	484.258382	966.502212	0.13857	6.7104E-05	1.4256	0.00069035	1.5641	0.00075745	484.2596531792446	69.905	0.13092	69.905	69.815	69.946	0					5	4	2	0	0	0	0.33618	1	17678	17678		11.114	0	1	48844	+		23742	16485	13486	13487	29905	29905					0.017620613149915698
LLHWAPDLV	9	Unmodified	_LLHWAPDLV_					0	0	0			REV__ENSG00000185432|ENST00000332160|METTL7A	REV__ENSG00000185432|ENST00000332160|METTL7A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.29248046875	2	532.300384	1062.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.027	1	57.106	56.606	57.606	0.078674								0	0	0	0.15265	1	13732	13732		34.102	13.649	1		+		23743	18379	13487	13488	29906	29906					0.057426372025247474
LLIDNVELILK	11	Unmodified	_LLIDNVELILK_					0	0	0		ENST00000549999.1_1_12:110386630-110391055:-|nuORF	ENST00000549999.1_1_12:110386630-110391055:-|nuORF	ENST00000549999.1_1_12:110386630-110391055:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8602905273438	2	641.902671	1281.79079	-0.017688	-1.1354E-05	-1.469	-0.00094296	-1.4867	-0.00095432	641.9008072850362	104.59	0.61302	104.59	104.3	104.91	0					140	84	2	0	0	0	0.33218	1	27758	27758		4.1895	1.691	1	252940			23744	11791	13488	13489	29907	29907					0.16116531502416365
LLIDNVELILK	11	Unmodified	_LLIDNVELILK_					0	0	0		ENST00000549999.1_1_12:110386630-110391055:-|nuORF	ENST00000549999.1_1_12:110386630-110391055:-|nuORF	ENST00000549999.1_1_12:110386630-110391055:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.85986328125	2	641.902671	1281.79079	0.25582	0.00016421	-1.6372	-0.0010509	-1.3814	-0.00088673	641.9006146003588	104.45	0.59309	104.46	104.18	104.77	0.0018463					144	84	2	0	0	0	0.33282	1	27730	27730		2.4985	0	1	374910			23745	11791	13488	13489	29908	29908					0.16116531502416365
LLIEHLGL	8	Unmodified	_LLIEHLGL_					0	0	0		nc|ENSG00000249992|Q8WZ71-2|TMEM158;ENSG00000249992|ENST00000503771|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	nc|ENSG00000249992|Q8WZ71-2|TMEM158	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.74688720703125	2	454.284203	906.553853	0.16855	7.657E-05	-0.010964	-4.9809E-06	0.15759	7.1589E-05	454.28398279812393	70.681	0.61293	70.681	70.35	70.963	0					25	21	2	0	0	0	0.34185	1	17839	17839		5.7604	0	1	173420			23746	8587	13489	13490	29909	29909					0.0968384979955772
LLIELSVEV	9	Unmodified	_LLIELSVEV_					0	0	0			REV__nc|ENSG00000106392|Q9NS00-2|C1GALT1	REV__nc|ENSG00000106392|Q9NS00-2|C1GALT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.788330078125	2	507.807708	1013.60086	-0.072164	-3.6645E-05	-2.1333	-0.0010833	-2.2055	-0.00112	507.8060325926183	14.057	0.17829	13.952	13.845	14.023	-0.10466					14	5	4	0	0	0	0.33018	1	633	633		4.3292	0.38484	1	39365	+		23747	22931	13490	13491	29910	29910					0.09460664560049281
LLIELSVEV	9	Unmodified	_LLIELSVEV_					0	0	0			REV__nc|ENSG00000106392|Q9NS00-2|C1GALT1	REV__nc|ENSG00000106392|Q9NS00-2|C1GALT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.807708	1013.60086	-0.065336	-3.3178E-05	-3.8413	-0.0019506	-3.9066	-0.0019838	507.80575927604497	14.012	0.11809	13.946	13.889	14.007	-0.066068	-0.0030086	-0.0010081	NaN	4.3292	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34325	+		23748	22931	13490	13491							0.09460664560049281
LLIHLVTSF	9	Unmodified	_LLIHLVTSF_					0	0	0			REV__ENST00000398316.7_1_13:49705333-49705405:+|nuORF	REV__ENST00000398316.7_1_13:49705333-49705405:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.7767333984375	2	521.81841	1041.62227	0.58124	0.0003033	-0.8928	-0.00046588	-0.31156	-0.00016258	521.8179975659173	63.731	0.98681	63.731	63.225	64.212	0					55	35	3	0	0	0	0.21905	1	15783	15783		16.942	9.6531	1	151540	+		23749	20682	13491	13492	29911	29911					0.10312094379423797
LLILKGLILVL	11	Unmodified	_LLILKGLILVL_					0	0	0			REV__nc|ENSG00000049618|Q8NFD5-1|ARID1B	REV__nc|ENSG00000049618|Q8NFD5-1|ARID1B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.787353515625	2	604.441235	1206.86792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.18	1	112.17	111.67	112.67	-0.015625								0	0	0	0.3823	1	29183	29183		0	0	1		+		23750	13558	13492	13493	29912	29912					0.27275794509409934
LLIQVNQLF	9	Unmodified	_LLIQVNQLF_					0	0	0			REV__ENSG00000119950|ENST00000332674|MXI1	REV__ENSG00000119950|ENST00000332674|MXI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.821044921875	2	544.329142	1086.64373	0.3596	0.00019574	0.232	0.00012628	0.5916	0.00032202	544.3292052217452	65.481	0.45918	65.57	65.352	65.811	0.088882					25	16	2	0	0	0	0.24739	1	16376	16376		13.508	0	1	291880	+		23751	15068	13493	13494	29913	29913					0.10387479408132094
LLIRVLVPS	9	Unmodified	_LLIRVLVPS_					0	0	0			REV__ENSG00000276231|ENST00000619866|PIK3R6	REV__ENSG00000276231|ENST00000619866|PIK3R6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2635803222656	2	505.342052	1008.66955	0.11895	6.0112E-05	-0.47773	-0.00024142	-0.35878	-0.00018131	505.3417827151873	76.348	0.61501	76.401	76.216	76.831	0.053421					31	21	2	0	0	0	0.24311	1	19612	19612		16.942	6.8684	1	299230	+		23752	19336	13494	13495	29914	29914					0.16556373650428213
LLIRVLVPS	9	Unmodified	_LLIRVLVPS_					0	0	0			REV__ENSG00000276231|ENST00000619866|PIK3R6	REV__ENSG00000276231|ENST00000619866|PIK3R6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.26385498046875	2	505.342052	1008.66955	0.42389	0.00021421	-0.29374	-0.00014844	0.13015	6.577E-05	505.34187875343866	76.4	0.46922	76.368	76.24	76.709	-0.031479					28	16	2	0	0	0	0.24311	1	19626	19626		16.942	6.8684	1	241300	+		23753	19336	13494	13495	29915	29915					0.16556373650428213
LLISKRLPA	9	Unmodified	_LLISKRLPA_					0	0	0		nc|ENSG00000135902|Q07001-2|CHRND;ENSG00000135902|ENST00000258385|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.851806640625	2	505.839677	1009.6648	0.13542	6.8501E-05	-0.31176	-0.0001577	-0.17634	-8.92E-05	505.8395233553293	46.305	0.38547	46.37	46.227	46.613	0.065048					23	13	2	0	0	0	0.23775	1	10402	10402		18.135	0	1	392250			23754	3916	13495	13496	29916	29916					0.16035489507657985
LLITFVYF	8	Unmodified	_LLITFVYF_					0	0	0			REV__Tigger3b_dup1519|chr4:22823170-22824367:+|1.7655105813976355|0.1032405959314167|4.1|519.0|41|3|sense	REV__Tigger3b_dup1519|chr4:22823170-22824367:+|1.7655105813976355|0.1032405959314167|4.1|519.0|41|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2840881347656	2	508.296779	1014.57901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.616	1	38.616	38.116	39.116	0								0	0	0	0.35985	1	8068	8068		10.183	0.10947	1		+		23755	23337	13496	13497	29917	29917					0.07229904602138504
LLIVAQALNF	10	Unmodified	_LLIVAQALNF_					0	0	0		Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|230|3|anti-sense	Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|230|3|anti-sense	Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|230|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.300537109375	2	551.336967	1100.65938	0.47579	0.00026232	0.25241	0.00013916	0.7282	0.00040148	551.3369639484373	71.086	0.60002	71.061	70.69	71.29	-0.024864					40	21	3	0	0	0	0.31267	1	18106	18106		10.074	5.7447	1	538310			23756	12363	13497	13498	29918	29918					0.11307765925175772
LLIYRRLRK	9	Unmodified	_LLIYRRLRK_					0	0	0		nc|ENSG00000122224|Q9HBG7-2|LY9;nc|ENSG00000122224|Q9HBG7-4|LY9;ENSG00000122224|ENST00000263285|LY9	nc|ENSG00000122224|Q9HBG7-2|LY9	nc|ENSG00000122224|Q9HBG7-2|LY9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.9153137207031	3	410.943425	1229.80845	0.11431	4.6975E-05	-0.19212	-7.8949E-05	-0.077805	-3.1974E-05	410.9433382461847	49.533	0.5105	49.578	49.184	49.695	0.044891					31	18	2	0	0	0	0.26228	1	11300	11300		0	0	1	166350			23757	3035	13498	13499	29919	29919					0.20273336338573245
LLIYRRLRK	9	Unmodified	_LLIYRRLRK_					0	0	0		nc|ENSG00000122224|Q9HBG7-2|LY9;nc|ENSG00000122224|Q9HBG7-4|LY9;ENSG00000122224|ENST00000263285|LY9	nc|ENSG00000122224|Q9HBG7-2|LY9	nc|ENSG00000122224|Q9HBG7-2|LY9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	410.943425	1229.80845	0.086929	3.5723E-05	-0.32517	-0.00013362	-0.23824	-9.7902E-05	410.9432742453947	49.467	0.54489	49.467	49.105	49.65	0	-0.024813	-0.0001477	NaN	0	29	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176400			23758	3035	13498	13499							0.20273336338573245
LLIYRRLRK	9	Unmodified	_LLIYRRLRK_					0	0	0		nc|ENSG00000122224|Q9HBG7-2|LY9;nc|ENSG00000122224|Q9HBG7-4|LY9;ENSG00000122224|ENST00000263285|LY9	nc|ENSG00000122224|Q9HBG7-2|LY9	nc|ENSG00000122224|Q9HBG7-2|LY9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	410.943425	1229.80845	0.017855	7.3375E-06	-0.075571	-3.1055E-05	-0.057715	-2.3718E-05	410.9433605909106	49.398	0.63307	49.431	49.18	49.813	0.032043	-0.061374	0.00016001	NaN	0	31	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117580			23759	3035	13498	13499							0.20273336338573245
LLKDKGLLL	9	Unmodified	_LLKDKGLLL_					0	0	0		nc|ENSG00000068903|Q8IXJ6-4|SIRT2;nc|ENSG00000068903|Q8IXJ6-5|SIRT2;nc|ENSG00000068903|Q8IXJ6-2|SIRT2;nc|ENSG00000068903|Q8IXJ6-3|SIRT2;ENSG00000068903|ENST00000249396|SIRT2	nc|ENSG00000068903|Q8IXJ6-4|SIRT2	nc|ENSG00000068903|Q8IXJ6-4|SIRT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2850036621094	2	506.841885	1011.66922	0.15757	7.9863E-05	0.25563	0.00012957	0.4132	0.00020943	506.8419891042822	53.703	0.25821	53.759	53.611	53.869	0.056255					12	9	2	0	0	0	0.25291	1	12662	12662		9.3474	0	1	115700			23760	893	13499	13500	29920	29920					0.16384953930560187
LLKDKGLLL	9	Unmodified	_LLKDKGLLL_					0	0	0		nc|ENSG00000068903|Q8IXJ6-4|SIRT2;nc|ENSG00000068903|Q8IXJ6-5|SIRT2;nc|ENSG00000068903|Q8IXJ6-2|SIRT2;nc|ENSG00000068903|Q8IXJ6-3|SIRT2;ENSG00000068903|ENST00000249396|SIRT2	nc|ENSG00000068903|Q8IXJ6-4|SIRT2	nc|ENSG00000068903|Q8IXJ6-4|SIRT2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	506.841885	1011.66922	0.53103	0.00026915	-0.30278	-0.00015346	0.22825	0.00011569	506.84158264289937	53.719	0.2635	53.719	53.595	53.858	0	-0.076406	-0.00022017	NaN	9.3474	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141960			23761	893	13499	13500							0.16384953930560187
LLKDKGLLL	9	Unmodified	_LLKDKGLLL_					0	0	0		nc|ENSG00000068903|Q8IXJ6-4|SIRT2;nc|ENSG00000068903|Q8IXJ6-5|SIRT2;nc|ENSG00000068903|Q8IXJ6-2|SIRT2;nc|ENSG00000068903|Q8IXJ6-3|SIRT2;ENSG00000068903|ENST00000249396|SIRT2	nc|ENSG00000068903|Q8IXJ6-4|SIRT2	nc|ENSG00000068903|Q8IXJ6-4|SIRT2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.841885	1011.66922	0.42741	0.00021663	-0.58379	-0.00029589	-0.15638	-7.9262E-05	506.8415575204146	53.917	0.1689	53.908	53.839	54.008	-0.0096092	0.11263	-0.00050503	NaN	9.3474	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113060			23762	893	13499	13500							0.16384953930560187
LLKGRSIHL	9	Unmodified	_LLKGRSIHL_					0	0	0			REV__ENST00000507169.5_1_5:70888767-70898477:+|nuORF	REV__ENST00000507169.5_1_5:70888767-70898477:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2319946289062	2	518.834926	1035.6553	0.37609	0.00019513	-0.1591	-8.2547E-05	0.21699	0.00011258	518.8346687437269	29.729	0.50688	29.742	29.469	29.976	0.012264					35	16	3	0	0	0	0.25612	1	5327	5327		8.1555	1.4324	1	244380	+		23763	15537	13500	13501	29921	29921					0.13889721222130902
LLKGRSIHL	9	Unmodified	_LLKGRSIHL_					0	0	0			REV__ENST00000507169.5_1_5:70888767-70898477:+|nuORF	REV__ENST00000507169.5_1_5:70888767-70898477:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.23193359375	2	518.834926	1035.6553	0.073645	3.8209E-05	-0.057268	-2.9713E-05	0.016377	8.4968E-06	518.8348293887011	29.733	0.47365	29.747	29.564	30.038	0.013474					36	15	3	0	0	0	0.24471	1	5352	5352		12.241	1.4167	1	257030	+		23764	15537	13500	13501	29922	29922					0.13889721222130902
LLKGRVPIA	9	Unmodified	_LLKGRVPIA_					0	0	0		nc|ENSG00000100490|Q00532-3|CDKL1	nc|ENSG00000100490|Q00532-3|CDKL1	nc|ENSG00000100490|Q00532-3|CDKL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.8269348144531	2	483.826569	965.638586	0.26671	0.00012904	0.51101	0.00024724	0.77772	0.00037628	483.8266880247848	39.634	0.74915	39.733	39.452	40.201	0.099407					76	26	4	0	0	0	0.17611	1	8360	8360		26.884	0	1	2715400			23765	12616	13501	13502	29923	29923					0.15439220336156723
LLKHAKEVV	9	Unmodified	_LLKHAKEVV_					0	0	0		ENSG00000111254|ENST00000228850|AKAP3	ENSG00000111254|ENST00000228850|AKAP3	ENSG00000111254|ENST00000228850|AKAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.8056640625	2	518.829309	1035.64407	0.61821	0.00032074	-0.2187	-0.00011347	0.39951	0.00020728	518.8291938715605	54.629	0.26451	54.692	54.54	54.805	0.063202					14	9	2	0	0	0	0.20651	1	13007	13007		20.454	0	1	203310			23766	2357	13502	13503	29924	29924					0.12766899127996112
LLKHAKEVV	9	Unmodified	_LLKHAKEVV_					0	0	0		ENSG00000111254|ENST00000228850|AKAP3	ENSG00000111254|ENST00000228850|AKAP3	ENSG00000111254|ENST00000228850|AKAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2886962890625	2	518.829309	1035.64407	0.61184	0.00031744	-0.37232	-0.00019317	0.23952	0.00012427	518.8290312966983	54.765	0.34427	54.749	54.451	54.796	-0.015923					13	11	2	0	0	0	0.20651	1	13025	13025		26.884	5.137	1	155080			23767	2357	13502	13503	29925	29925					0.12766899127996112
LLKHGANA	8	Unmodified	_LLKHGANA_					0	0	0		ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	ENSG00000105186|ENST00000306065|ANKRD27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.9263610839844	2	412.24287	822.471186	-0.081526	-3.3609E-05	0.60006	0.00024737	0.51853	0.00021376	412.2429754548691	25.566	0.48251	25.51	25.25	25.732	-0.055931					30	16	2	0	0	0	0.34185	1	4082	4082		10.183	0.83596	1	228970			23768	1952	13503	13504	29926	29926					0.05284952791419073
LLKIATVPG	9	Unmodified	_LLKIATVPG_					0	0	0			REV__nc|ENSG00000152595|Q9NQ76-3|MEPE	REV__nc|ENSG00000152595|Q9NQ76-3|MEPE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7506103515625	2	456.299853	910.585153	0.25874	0.00011806	0.68501	0.00031257	0.94375	0.00043063	456.3002255606334	46.823	0.67162	46.876	46.629	47.3	0.052574					40	24	2	0	0	0	0.24311	1	10702	10702		16.942	1.0951	1	646700	+		23769	16588	13504	13505	29927	29927					0.1262842283365444
LLKIFCQL	8	Unmodified	_LLKIFCQL_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2;ENST00000582901.1_1_17:26969280-26970265:-|nuORF;ENST00000577417.5_1_17:26966838-26970337:-|nuORF;ENST00000580882.5_1_17:26966325-26972074:-|nuORF	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.7699890136719	2	489.296256	976.57796	0.45216	0.00022124	-0.86854	-0.00042497	-0.41637	-0.00020373	489.29556504960414	75.564	0.79733	75.533	75.059	75.857	-0.031487					56	29	3	0	0	0	0.34046	1	19505	19505		14.582	0	1	161840			23770	374	13505	13506	29928	29928					0.08873366961574902
LLKKAATY	8	Unmodified	_LLKKAATY_					0	0	0			REV__ENST00000299197.6_1_13:95410637-95411129:-|nuORF	REV__ENST00000299197.6_1_13:95410637-95411129:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2838134765625	2	454.284203	906.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.481	1	88.57	88.07	89.07	0.089195								0	0	0	0.37724	1	23369	23369		2.3027	1.5091	1		+		23771	19810	13506	13507	29929	29929					0.09683849799546351
LLKKHEAF	8	Unmodified	_LLKKHEAF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.W2169Cfs*90|1|0.11|ENSG00000197694|chr9:128626632-128626632|G/-|frameshift_variant;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1	nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.5950927734375	2	493.295102	984.575651	0.46021	0.00022702	-1.3529	-0.00066738	-0.8927	-0.00044036	493.29458443431724	21.469	1.0522	21.469	20.742	21.795	0					51	36	2	0	0	0	0.34185	1	2690	2690		10.183	0	1	46723			23772	5700;970;7989	13507	13508	29930	29930					0.08274654548131366
LLKKHEAF	8	Unmodified	_LLKKHEAF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.W2169Cfs*90|1|0.11|ENSG00000197694|chr9:128626632-128626632|G/-|frameshift_variant;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1	nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	493.295102	984.575651	0.53273	0.0002628	0.66321	0.00032716	1.1959	0.00058995	493.295003256117	21.459	0.44814	21.358	21.16	21.608	-0.10034	-0.052981	0.00071705	NaN	10.183	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36775			23773	5700;970;7989	13507	13508							0.08274654548131366
LLKLKELHL	9	Unmodified	_LLKLKELHL_					0	0	0		nc|ENSG00000176204|Q86VH4-2|LRRTM4;ENSG00000176204|ENST00000409884|LRRTM4	nc|ENSG00000176204|Q86VH4-2|LRRTM4	nc|ENSG00000176204|Q86VH4-2|LRRTM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.2891845703125	2	553.868434	1105.72232	0.53293	0.00029517	-0.5198	-0.0002879	0.013135	7.2753E-06	553.867965412727	48.214	0.35963	48.258	48.011	48.371	0.04332					20	13	2	0	0	0	0.25811	1	10968	10968		5.2307	0	1	175980			23774	6909	13508	13509	29931	29931					0.17368331713214502
LLKLTQYLKEI	11	Unmodified	_LLKLTQYLKEI_					0	0	0		ENSG00000164332|ENST00000296786|UBLCP1;ENST00000519276.1_1_5:158701561-158711936:+|nuORF	ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2838134765625	3	454.618273	1360.83299	0.30939	0.00014066	-0.35673	-0.00016218	-0.047339	-2.1521E-05	454.61808822740505	86.78	0.89374	86.774	85.993	86.887	-0.0056229					58	34	2	0	0	0	0.33351	1	22796	22796		0.094841	0	1	352360			23775	5835	13509	13510	29932	29932					0.1670050691079723
LLKMKMAGLN	10	Unmodified	_LLKMKMAGLN_					0	0	0		nc|ENSG00000170266|P16278-2|GLB1;nc|ENSG00000170266|P16278-3|GLB1;nc|ENSG00000170266|P16278|GLB1;ENSG00000170266|ENST00000307363|GLB1;GLB1|p.L108Ffs*13|1|0.18|ENSG00000170266|chr3:33068895-33068895|A/-|frameshift_variant	nc|ENSG00000170266|P16278-2|GLB1	nc|ENSG00000170266|P16278-2|GLB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.824951171875	2	559.824855	1117.63516	-0.070299	-3.9355E-05	-0.031834	-1.7821E-05	-0.10213	-5.7176E-05	559.8250081993436	18.434	0.48339	18.376	18.171	18.654	-0.058172					35	16	3	0	0	0	0.41085	1	1979	1979		1.4819	0	1	158910			23776	6437	13510	13511	29933	29933					0.08104466175677771
LLKNIPSDR	9	Unmodified	_LLKNIPSDR_					0	0	0			REV__ENST00000485535.5_1_3:48445895-48454598:-|nuORF	REV__ENST00000485535.5_1_3:48445895-48454598:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.31640625	2	528.314023	1054.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.13	1	117.13	116.63	117.63	0								0	0	0	0.25858	1	30302	30302		3.5965	1.2938	1		+		23777	17118	13511	13512	29934	29934					0.08837120742941806
LLKNIPSDR	9	Unmodified	_LLKNIPSDR_					0	0	0			REV__ENST00000485535.5_1_3:48445895-48454598:-|nuORF	REV__ENST00000485535.5_1_3:48445895-48454598:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.814697265625	2	528.314023	1054.61349	0.20687	0.00010929	0.066512	3.5139E-05	0.27339	0.00014443	528.8138983692609	118.74	1.8195	118.72	118.15	119.97	-0.024147					433	229	2	0	0	0	0.33911	1	30566	30566		2.9952	0.41776	1	25102	+		23778	17118	13511	13512	29935	29935					0.08837120742941806
LLKNPKILL	9	Unmodified	_LLKNPKILL_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3654174804688	2	526.365527	1050.7165	0.5005	0.00026345	-0.23158	-0.0001219	0.26892	0.00014155	526.3653108999715	79.867	0.40688	79.867	79.69	80.097	0					27	14	2	0	0	0	0.20344	1	20742	20742		23.148	7.3012	1	261960			23779	3904	13512	13513	29936	29936					0.19317233201559247
LLKNPKILL	9	Unmodified	_LLKNPKILL_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3662719726562	2	526.365527	1050.7165	0.46937	0.00024706	0.18824	9.9085E-05	0.65762	0.00034615	526.3655307022802	79.819	0.5123	79.88	79.669	80.181	0.061417					36	18	3	0	0	0	0.20344	1	20701	20701		23.148	6.9993	1	211030			23780	3904	13512	13513	29937	29937					0.19317233201559247
LLKNPKILL	9	Unmodified	_LLKNPKILL_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3656616210938	2	526.365527	1050.7165	0.5265	0.00027713	-0.19527	-0.00010278	0.33123	0.00017435	526.3654188986262	79.903	0.53368	79.874	79.668	80.202	-0.028931					35	18	3	0	0	0	0.20344	1	20743	20743		23.148	7.3012	1	207120			23781	3904	13512	13513	29938	29938					0.19317233201559247
LLKNQPKLI	9	Unmodified	_LLKNQPKLI_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2918701171875	2	533.852784	1065.69102	0.61473	0.00032818	-1.9095	-0.0010194	-1.2948	-0.00069123	533.8517709527765	48.64	0.47675	48.673	48.207	48.684	0.032043					25	17	2	0	0	0	0.2451	1	11004	11004		10.824	0	1	249470			23782	1770	13513	13514	29939	29939					0.1607975867912046
LLKNYYKW	8	Unmodified	_LLKNYYKW_					0	0	0		ENSG00000137561|ENST00000260116|TTPA	ENSG00000137561|ENST00000260116|TTPA	ENSG00000137561|ENST00000260116|TTPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.2839965820312	2	564.316035	1126.61752	0.19655	0.00011092	1.4541	0.00082056	1.6506	0.00093147	564.3170812164532	19.941	0.24651	19.941	19.739	19.986	0					14	8	2	0	0	0	0.34337	1	2342	2342		5.2307	0.47466	1	49607			23783	4059	13514	13515	29940	29940					0.05927210236632163
LLKNYYKW	8	Unmodified	_LLKNYYKW_					0	0	0		ENSG00000137561|ENST00000260116|TTPA	ENSG00000137561|ENST00000260116|TTPA	ENSG00000137561|ENST00000260116|TTPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.2841796875	2	564.316035	1126.61752	0.45615	0.00025741	1.4368	0.00081078	1.8929	0.0010682	564.3168452941741	20.065	0.30036	20.01	19.762	20.062	-0.055693					17	10	2	0	0	0	0.34408	1	2366	2366		2.3027	0.4585	1	55111			23784	4059	13514	13515	29941	29941					0.05927210236632163
LLKNYYKW	8	Unmodified	_LLKNYYKW_					0	0	0		ENSG00000137561|ENST00000260116|TTPA	ENSG00000137561|ENST00000260116|TTPA	ENSG00000137561|ENST00000260116|TTPA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.316035	1126.61752	0.46929	0.00026483	1.3826	0.00078023	1.8519	0.0010451	564.3169726399326	20.1	0.36835	19.984	19.758	20.126	-0.11592	0.0058465	-4.109E-05	NaN	5.2307	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43766			23785	4059	13514	13515							0.05927210236632163
LLKPLAID	8	Unmodified	_LLKPLAID_					0	0	0			REV__ENST00000206423.7_2_3:112318632-112318818:-|nuORF	REV__ENST00000206423.7_2_3:112318632-112318818:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.25811767578125	2	441.786579	881.558604	0.23944	0.00010578	-0.71267	-0.00031485	-0.47323	-0.00020907	441.7860690771179	58.227	0.93728	58.227	57.927	58.864	0					54	31	3	0	0	0	0.34185	1	14265	14265		10.183	0	1	509060	+		23786	19402	13515	13516	29942	29942					0.11308733942303206
LLKQKQKQ	8	Unmodified	_LLKQKQKQ_					0	0	0			REV__ENST00000263960.6_1_2:198339073-198339454:+|nuORF	REV__ENST00000263960.6_1_2:198339073-198339454:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7493896484375	2	507.326934	1012.63931	0.062837	3.1879E-05	-0.24898	-0.00012632	-0.18614	-9.4436E-05	507.32670574254144	27.412	0.39939	27.391	27.215	27.615	-0.021412					21	13	2	0	0	0	0.34408	1	4614	4614		2.3027	0	1	108650	+		23787	19628	13516	13517	29943	29943					0.13350014985235248
LLKQWVSI	8	Unmodified	_LLKQWVSI_					0	0	0			REV__ENST00000564578.5_1_16:75664381-75665136:-|nuORF	REV__ENST00000564578.5_1_16:75664381-75665136:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.3059997558594	2	493.805303	985.596052	0.4768	0.00023545	0.54166	0.00026747	1.0185	0.00050292	493.805610445228	63.441	0.74688	63.432	63.076	63.823	-0.0085564					38	26	2	0	0	0	0.32778	1	15762	15762		20.871	2.7362	1	410020	+		23788	22342	13517	13518	29944	29944					0.10267825207949954
LLKQYKILLH	10	Unmodified	_LLKQYKILLH_					0	0	0			REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18	REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3778076171875	2	634.908091	1267.80163	-0.067015	-4.2548E-05	1.4557	0.00092425	1.3887	0.0008817	634.9094449295071	103.22	0.34415	103.22	102.99	103.34	0					64	49	2	0	0	0	0.32123	1	27419	27419		0.40072	0	1	7722100	+		23789	16345	13518	13519	29945	29945					0.17843978667360716
LLKRSGKSL	9	Unmodified	_LLKRSGKSL_					0	0	0		nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;ENST00000478320.1_1_7:150825672-150834824:+|nuORF	nc|ENSG00000133612|Q96P47-5|AGAP3	nc|ENSG00000133612|Q96P47-5|AGAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2916259765625	2	501.326934	1000.63931	0.37538	0.00018819	1.6808	0.00084263	2.0562	0.0010308	501.3275315529272	74.976	0.45905	75.028	74.81	75.269	0.052368					28	16	2	0	0	0	0.24311	1	19208	19208		11.64	11.64	1	253980			23790	3717	13519	13520	29946	29946					0.1390201498523993
LLKTQISV	8	Unmodified	_LLKTQISV_					0	0	0			REV__ENST00000343267.7_1_3:195310905-195310965:-|nuORF	REV__ENST00000343267.7_1_3:195310905-195310965:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.77020263671875	2	451.289485	900.564418	0.43631	0.0001969	-0.33089	-0.00014933	0.10542	4.7575E-05	451.28919103046303	48.118	0.54929	48.161	48.011	48.56	0.04332					34	20	2	0	0	0	0.29394	1	11034	11034		22.736	0	1	541680	+		23791	20132	13520	13521	29947	29947					0.11015832453983876
LLKVFQALF	9	Unmodified	_LLKVFQALF_					0	0	0		ENSG00000155542|ENST00000285947|SETD9;nc|ENSG00000155542|Q8NE22-2|SETD9	ENSG00000155542|ENST00000285947|SETD9	ENSG00000155542|ENST00000285947|SETD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2901000976562	2	539.836603	1077.65865	0.54509	0.00029426	-0.48514	-0.0002619	0.059949	3.2363E-05	539.83623457265	57.495	0.77245	57.495	57.246	58.018	0					62	27	3	0	0	0	0.24311	1	13900	13900		16.942	0	1	1382300			23792	5181	13521	13522	29948	29948					0.12292971276133358
LLKVFQALF	9	Unmodified	_LLKVFQALF_					0	0	0		ENSG00000155542|ENST00000285947|SETD9;nc|ENSG00000155542|Q8NE22-2|SETD9	ENSG00000155542|ENST00000285947|SETD9	ENSG00000155542|ENST00000285947|SETD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2902221679688	2	539.836603	1077.65865	0.47744	0.00025774	-0.45889	-0.00024773	0.018544	1.0011E-05	539.8363815638363	57.339	0.6041	57.424	57.184	57.788	0.085617					50	21	3	0	0	0	0.22596	1	13837	13837		10.824	0	1	1789400			23793	5181	13521	13522	29949	29949					0.12292971276133358
LLKVMIFF	8	Unmodified	_LLKVMIFF_					0	0	0		ENST00000380842.4_1_13:29236592-29238659:+|nuORF	ENST00000380842.4_1_13:29236592-29238659:+|nuORF	ENST00000380842.4_1_13:29236592-29238659:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.82745361328125	2	505.808999	1009.60345	0.26181	0.00013243	-1.4572	-0.00073704	-1.1953	-0.00060461	505.8082045471145	38.123	1.024	38.123	37.82	38.844	0					66	36	2	0	0	0	0.34185	1	8124	8124		5.7604	0	1	486150			23794	9987	13522	13523	29950	29950					0.0990284148400633
LLKWYFSEE	9	Unmodified	_LLKWYFSEE_					0	0	0		ENST00000566701.5_1_1:155184905-155187601:-|nuORF	ENST00000566701.5_1_1:155184905-155187601:-|nuORF	ENST00000566701.5_1_1:155184905-155187601:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.8984680175781	3	405.541252	1213.60193	-0.26434	-0.0001072	-3.8365	-0.0015559	-4.1008	-0.0016631	405.5396793209534	31.319	0.77319	31.319	30.862	31.636	0					60	27	3	0	0	0	0.2524	1	5917	5917		11.495	7.9077	1	218930			23795	11986	13523	13524	29951	29951					0.0036687892895770347
LLKWYFSEE	9	Unmodified	_LLKWYFSEE_					0	0	0		ENST00000566701.5_1_1:155184905-155187601:-|nuORF	ENST00000566701.5_1_1:155184905-155187601:-|nuORF	ENST00000566701.5_1_1:155184905-155187601:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	405.541252	1213.60193	-0.36665	-0.00014869	-3.8265	-0.0015518	-4.1931	-0.0017005	405.53976747281433	31.255	0.57466	31.298	30.968	31.543	0.042366	0.013665	0.00018705	NaN	4.5289	55	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224350			23796	11986	13523	13524							0.0036687892895770347
LLLALVIFYL	10	Unmodified	_LLLALVIFYL_					0	0	0		ENSG00000112149|ENST00000379153|CD83	ENSG00000112149|ENST00000379153|CD83	ENSG00000112149|ENST00000379153|CD83	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8456420898438	2	589.383386	1176.75222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.68	1	111.67	111.17	112.17	-0.013939								0	0	0	0.38201	1	29053	29053		0.45834	0	1				23797	2415	13524	13525	29952	29952					0.17091270658556823
LLLCALKHF	9	Unmodified	_LLLCALKHF_					0	0	0		ENST00000468735.6_1_3:42662892-42668896:+|nuORF	ENST00000468735.6_1_3:42662892-42668896:+|nuORF	ENST00000468735.6_1_3:42662892-42668896:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3001708984375	2	529.31498	1056.61541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.695	1	97.688	97.188	98.188	-0.0068283								0	0	0	0.25631	1	26160	26160		4.3292	0	1				23798	10842	13525	13526	29953	29953					0.08936458227208277
LLLCPWVI	8	Unmodified	_LLLCPWVI_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.785400390625	2	478.785524	955.556496	0.38646	0.00018503	-0.33496	-0.00016037	0.051497	2.4656E-05	478.78534076573084	87.102	0.87202	87.096	86.608	87.48	-0.0056229					53	36	2	0	0	0	0.44842	1	23038	23038		6.3541	0	1	244270			23799	4671	13526	13527	29954	29954					0.0769398193286861
LLLDCLLV	8	Unmodified	_LLLDCLLV_					0	0	0			REV__ENSG00000168081|ENST00000301908|PNOC	REV__ENSG00000168081|ENST00000301908|PNOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.27484130859375	2	451.274989	900.535426	-0.057239	-2.5831E-05	-0.032474	-1.4655E-05	-0.089714	-4.0486E-05	451.2748439314771	73.676	0.82346	73.676	73.335	74.158	0					74	28	4	0	0	0	0.20019	1	18853	18853		42.968	0	1	1483700	+		23800	17439	13527	13528	29955	29955					0.08117971833348747
LLLDCLLV	8	Unmodified	_LLLDCLLV_					0	0	0			REV__ENSG00000168081|ENST00000301908|PNOC	REV__ENSG00000168081|ENST00000301908|PNOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.27496337890625	2	451.274989	900.535426	0.07212	3.2546E-05	-0.02191	-9.8875E-06	0.05021	2.2658E-05	451.2748495085816	73.661	0.81567	73.713	73.36	74.176	0.052368					76	28	4	0	0	0	0.20019	1	18831	18831		42.968	0	1	1407700	+		23801	17439	13527	13528	29956	29956					0.08117971833348747
LLLDCLLV	8	Unmodified	_LLLDCLLV_					0	0	0			REV__ENSG00000168081|ENST00000301908|PNOC	REV__ENSG00000168081|ENST00000301908|PNOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.27484130859375	2	451.274989	900.535426	0.12304	5.5526E-05	-0.13771	-6.2144E-05	-0.014667	-6.6187E-06	451.2748352609945	73.729	0.79668	73.698	73.314	74.111	-0.030655					80	28	4	0	0	0	0.14465	1	18841	18841		52.693	0	1	1366800	+		23802	17439	13527	13528	29957	29957					0.08117971833348747
LLLEKVNIIPT	11	Unmodified	_LLLEKVNIIPT_					0	0	0		ENST00000513820.1_1_5:118463535-118463700:-|nuORF	ENST00000513820.1_1_5:118463535-118463700:-|nuORF	ENST00000513820.1_1_5:118463535-118463700:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.381591796875	2	626.897389	1251.78022	0.13759	8.6256E-05	-3.2571	-0.0020418	-3.1195	-0.0019556	626.8959197442783	103.64	0.043427	103.64	103.6	103.65	-0.0011139					8	6	2	0	0	0	0.42346	1	27557	27557		8.1555	0	1	8624500			23803	11404	13528	13529	29958	29958					0.16440548848004255
LLLFDGCIFE	10	Unmodified	_LLLFDGCIFE_					0	0	0			REV__ENSG00000137574|ENST00000260129|TGS1	REV__ENSG00000137574|ENST00000260129|TGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8133544921875	2	585.299193	1168.58383	0.20203	0.00011825	-1.2339	-0.00072217	-1.0318	-0.00060393	585.2989928530284	93.766	0.87701	93.852	93.525	94.402	0.086678					143	68	3	0	0	0	0.33817	2	24999	24999;25039		14.838	0	1	241860	+		23804	15872	13529	13530	29959;29960	29959					0.006284206825739602
LLLFSFWA	8	Unmodified	_LLLFSFWA_					0	0	0		ENST00000302424.11_1_10:104417132-104417561:+|nuORF	ENST00000302424.11_1_10:104417132-104417561:+|nuORF	ENST00000302424.11_1_10:104417132-104417561:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7820739746094	2	498.781296	995.54804	0.32336	0.00016129	0.77885	0.00038848	1.1022	0.00054976	498.78164320191956	74.066	2.0217	74.035	72.395	74.416	-0.030655					101	72	2	0	0	0	0.44842	1	18925	18925		6.3541	0	1	1050800			23805	9236	13530	13531	29961	29961					0.05008751287903124
LLLFTLRDRM	10	Unmodified	_LLLFTLRDRM_					0	0	0			REV__ENST00000579584.5_1_17:31107629-31107725:-|nuORF	REV__ENST00000579584.5_1_17:31107629-31107725:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2835998535156	3	426.584797	1276.73256	0.12825	5.471E-05	-0.19298	-8.2323E-05	-0.06473	-2.7613E-05	426.584635675069	85.954	2.0695	85.954	85.146	87.216	0					172	80	3	0	0	0	0.32122	1	22440	22440		2.086	0	1	477620	+		23806	22476	13531	13532	29962	29962					0.10526571376158245
LLLFTLRDRM	10	Unmodified	_LLLFTLRDRM_					0	0	0			REV__ENST00000579584.5_1_17:31107629-31107725:-|nuORF	REV__ENST00000579584.5_1_17:31107629-31107725:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2836608886719	3	426.584797	1276.73256	0.027671	1.1804E-05	-0.06657	-2.8398E-05	-0.038899	-1.6594E-05	426.5846613675698	85.991	2.2255	86.076	85.159	87.385	0.084251					162	88	2	0	0	0	0.32122	1	22344	22344		2.086	0.17963	1	339400	+		23807	22476	13531	13532	29963	29963					0.10526571376158245
LLLFTLRDRM	10	Unmodified	_LLLFTLRDRM_					0	0	0			REV__ENST00000579584.5_1_17:31107629-31107725:-|nuORF	REV__ENST00000579584.5_1_17:31107629-31107725:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.2836608886719	3	426.584797	1276.73256	0.14405	6.145E-05	-0.11521	-4.9147E-05	0.028841	1.2303E-05	426.5846694490865	86.047	2.1245	86.038	85.115	87.239	-0.0090027					161	81	3	0	0	0	0.32122	1	22376	22376		2.086	0.17963	1	293790	+		23808	22476	13531	13532	29964	29964					0.10526571376158245
LLLGNRWKTF	10	Unmodified	_LLLGNRWKTF_					0	0	0		nc|ENSG00000078725|O60477-3|BRINP1;ENSG00000078725|ENST00000265922|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.21881103515625	3	416.580152	1246.71863	0.27712	0.00011544	-0.59974	-0.00024984	-0.32262	-0.0001344	416.5797981690892	38.228	0.65837	38.319	38.072	38.73	0.090881					38	23	2	0	0	0	0.31994	1	7973	7973		5.4027	2.5594	1	207080			23809	1115	13532	13533	29965	29965					0.10513661939353369
LLLGPLRLSF	10	Unmodified	_LLLGPLRLSF_					0	0	0			REV__ENSG00000130349|ENST00000311381|MTRES1	REV__ENSG00000130349|ENST00000311381|MTRES1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.7159423828125	2	564.860609	1127.70667	0.37543	0.00021207	0.0303	1.7115E-05	0.40573	0.00022918	564.8605755847256	72.47	0.51199	72.44	72.115	72.627	-0.029305					28	17	2	0	0	0	0.31745	1	18428	18428		7.9102	2.6795	1	97857	+		23810	15452	13533	13534	29966	29966					0.14792045196168147
LLLGPLRLSF	10	Unmodified	_LLLGPLRLSF_					0	0	0			REV__ENSG00000130349|ENST00000311381|MTRES1	REV__ENSG00000130349|ENST00000311381|MTRES1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.860609	1127.70667	0.56575	0.00031957	0.35549	0.0002008	0.92125	0.00052038	564.8607482118585	72.341	0.37189	72.397	72.17	72.542	0.056572	-0.021414	0.00021912	NaN	7.9102	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147710	+		23811	15452	13533	13534							0.14792045196168147
LLLHAYRGLR	10	Unmodified	_LLLHAYRGLR_					0	0	0		nc|ENSG00000147724|Q49AJ0-3|FAM135B;nc|ENSG00000147724|Q49AJ0-4|FAM135B;nc|ENSG00000147724|Q49AJ0-2|FAM135B;ENST00000482951.6_1_8:139144838-139379577:-|nuORF;ENSG00000147724|ENST00000395297|FAM135B	nc|ENSG00000147724|Q49AJ0-3|FAM135B	nc|ENSG00000147724|Q49AJ0-3|FAM135B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.37060546875	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.24	1	119.26	118.76	119.76	0.026253								0	0	0	0.38202	1	30849	30849		0.40072	0.050084	1				23812	4784	13534	13535	29967	29967					0.13292484033490837
LLLISFRLEPG	11	Unmodified	_LLLISFRLEPG_					0	0	0		nc|ENSG00000111452|Q6QNK2-2|ADGRD1;ENSG00000111452|ENST00000261654|ADGRD1;nc|ENSG00000111452|Q6QNK2-4|ADGRD1;nc|ENSG00000111452|Q6QNK2-3|ADGRD1	nc|ENSG00000111452|Q6QNK2-2|ADGRD1	nc|ENSG00000111452|Q6QNK2-2|ADGRD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.7802124023438	2	629.381906	1256.74926	0.35333	0.00022238	-0.90206	-0.00056774	-0.54873	-0.00034536	629.383071892184	62.439	0.66225	62.431	62.142	62.804	-0.0085526					50	24	3	0	0	0	0.329	1	15390	15390		9.3831	2.0939	1	260970			23813	2365	13535	13536	29968	29968					0.1311539553375951
LLLKELRETY	10	Unmodified	_LLLKELRETY_					0	0	0		ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	639.3632202148438	2	639.37682	1276.73909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.64	1	106.64	106.14	107.14	0.0050507								0	0	0	0.37664	1	28211	28211		3.5965	0	1				23814	8070	13536	13537	29969	29969					0.11178787808535162
LLLKEVVPRW	10	Unmodified	_LLLKEVVPRW_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-3|THADA	REV__nc|ENSG00000115970|Q6YHU6-3|THADA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.8897094726562	2	626.892441	1251.77033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.58	1	104.58	104.08	105.08	0								0	0	0	0.38166	1	27760	27760		1.4819	0	1		+		23815	14904	13537	13538	29970	29970					0.1545140563325731
LLLKEVVPRW	10	Unmodified	_LLLKEVVPRW_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-3|THADA	REV__nc|ENSG00000115970|Q6YHU6-3|THADA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.8894653320312	2	626.892441	1251.77033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.43	1	104.44	103.94	104.94	0.0018463								0	0	0	0.38166	1	27738	27738		1.4819	0.15237	1		+		23816	14904	13537	13538	29971	29971					0.1545140563325731
LLLKSLHKF	9	Unmodified	_LLLKSLHKF_					0	0	0			REV__nc|ENSG00000145246|Q9P241-2|ATP10D	REV__nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.8543090820312	2	549.855327	1097.6961	0.3768	0.00020719	-2.191	-0.0012047	-1.8142	-0.00099753	549.8541183741938	73.799	0.48252	73.852	73.578	74.06	0.052361					28	16	2	0	0	0	0.25989	1	18874	18874		14.838	3.198	1	438960	+		23817	16286	13538	13539	29972	29972					0.15116062541756037
LLLLEENMW	9	Unmodified	_LLLLEENMW_					0	0	0			REV__Tigger1_dup8984|chr12:21768325-21770471:+|1.0340961866251268|0.4575146523094087|1.18|539.0|63|3|sense	REV__Tigger1_dup8984|chr12:21768325-21770471:+|1.0340961866251268|0.4575146523094087|1.18|539.0|63|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2529296875	2	580.804642	1159.59473	0.47202	0.00027415	-0.49552	-0.0002878	-0.023502	-1.365E-05	580.8044136273483	19.936	0.3272	19.881	19.735	20.062	-0.055693					18	11	2	0	0	0	0.26251	1	2375	2375		0.6015	0	1	33929	+		23818	23333	13539	13540	29973	29973					0.021318230568567742
LLLLEENMW	9	Unmodified	_LLLLEENMW_					0	0	0			REV__Tigger1_dup8984|chr12:21768325-21770471:+|1.0340961866251268|0.4575146523094087|1.18|539.0|63|3|sense	REV__Tigger1_dup8984|chr12:21768325-21770471:+|1.0340961866251268|0.4575146523094087|1.18|539.0|63|3|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	580.804642	1159.59473	0.19162	0.00011129	-0.28265	-0.00016417	-0.091036	-5.2874E-05	580.8047778218864	19.798	0.36029	19.798	19.685	20.045	0	-0.041119	0.00014864	NaN	0.6015	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33560	+		23819	23333	13539	13540							0.021318230568567742
LLLLLAERF	9	Unmodified	_LLLLLAERF_					0	0	0		ENSG00000163794|ENST00000296099|UCN	ENSG00000163794|ENST00000296099|UCN	ENSG00000163794|ENST00000296099|UCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8047485351562	2	544.347335	1086.68012	0.62652	0.00034105	-0.00094043	-5.1192E-07	0.62558	0.00034053	544.3472239024702	71.743	0.43196	71.799	71.601	72.033	0.056572					28	15	2	0	0	0	0.24739	1	18295	18295		13.508	0	1	156850			23820	5732	13540	13541	29974	29974					0.14024356304844332
LLLLLGWRPM	10	Unmodified	_LLLLLGWRPM_					0	0	0			REV__nc|ENSG00000143839|P00797-2|REN	REV__nc|ENSG00000143839|P00797-2|REN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3707885742188	2	606.370287	1210.72602	0.29256	0.0001774	-0.18289	-0.0001109	0.10967	6.65E-05	606.3703421592672	98.494	0.20301	98.556	98.438	98.641	0.061523					40	23	3	0	0	0	0.41815	1	26380	26380		0.40072	0.050084	1	113140	+		23821	16204	13541	13542	29975	29975					0.12908678215421787
LLLLLLLL	8	Unmodified	_LLLLLLLL_					0	0	0		LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000185896|ENST00000332556|LAMP1;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000167925|Q8N2G8-3|GHDC;GP1BA|p.T494Nfs*4|1|0.36|ENSG00000185245|chr17:4934077-4934078|-/A|frameshift_variant;ENSG00000167925|ENST00000587427|GHDC;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;CON__ENSEMBL:ENSBTAP00000023055;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;ENSG00000167261|ENST00000393847|DPEP2;ENSG00000215644|ENST00000400723|GCGR;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000185245|ENST00000329125|GP1BA;ENSG00000184709|ENST00000371542|LRRC26;HGFAC|p.P341Rfs*12|1|0.67|ENSG00000109758|chr4:3445269-3445269|C/-|frameshift_variant;nc|ENSG00000204301|Q99466-3|NOTCH4;nc|ENSG00000129214|P04278-5|SHBG;nc|ENSG00000283706|Q9UI38|PRSS50;nc|ENSG00000167925|Q8N2G8-2|GHDC;ENSG00000104972|ENST00000324602|LILRB1;ENSG00000129214|ENST00000380450|SHBG;nc|ENSG00000054654|Q8WXH0-6|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000104972|Q8NHL6-4|LILRB1;ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000143434|Q9H3T2-3|SEMA6C;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000182272|ENST00000329962|B4GALNT4;ENSG00000172071|ENST00000303236|EIF2AK3;ENSG00000162337|ENST00000294304|LRP5;ENSG00000143434|ENST00000368914|SEMA6C;ENSG00000169174|ENST00000302118|PCSK9;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000204967|Q9UN74-2|PCDHA4;nc|ENSG00000167261|Q9H4A9-2|DPEP2;SEMA4B|p.N175Mfs*161|1|0.16|ENSG00000185033|chr15:90221007-90221008|-/GGACGAGAAGGGGATGTCCA|frameshift_variant;ENST00000530717.1_1_11:369803-372772:+|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000396904.2_2_7:5097383-5112677:+|nuORF;ENSG00000142538|ENST00000270631|PTH2;ENST00000522399.1_1_1:231090115-231114586:-|nuORF;ENSG00000070031|ENST00000176195|SCT;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;ENST00000268795.5_1_16:68025981-68027124:-|nuORF;ENSG00000161610|ENST00000293330|HCRT;nc|ENSG00000117899|Q14696-2|MESD;nc|ENSG00000135077|Q8TDQ0-2|HAVCR2;ENSG00000204583|ENST00000376608|LRCOL1;ENSG00000178473|ENST00000380433|UCN3;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000344924.7_1_7:134331590-134346213:+|nuORF;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;ENST00000393132.2_1_7:134331590-134343135:+|nuORF;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;ENST00000522902.1_1_5:156533605-156536090:-|nuORF;ENSG00000159189|ENST00000374640|C1QC;ENSG00000164897|ENST00000297533|TMUB1;nc|ENSG00000228789|E2RYF7|HCG22;ENSG00000184992|ENST00000341446|BRI3BP;ENSG00000109743|ENST00000265016|BST1;nc|ENSG00000001036|Q9BTY2-2|FUCA2;nc|ENSG00000182685|Q6PL45|BRICD5;ENSG00000137161|ENST00000372836|CNPY3;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;ENSG00000135077|ENST00000307851|HAVCR2;nc|ENSG00000167261|Q9H4A9-3|DPEP2;ENSG00000117899|ENST00000261758|MESD;ENSG00000183971|ENST00000566435|NPW;DPEP3|p.A194Vfs*2|1|0.35|ENSG00000141096|chr16:67978528-67978535|GTAGGAGG/-|frameshift_variant;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENSG00000109255|ENST00000264218|NMU;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;ENSG00000243364|ENST00000368409|EFNA4;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;ENSG00000182685|ENST00000328540|BRICD5;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-4|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.S1928Lfs*17|1|0.08|ENSG00000083857|chr4:186620804-186620804|A/-|frameshift_variant;ENSG00000161921|ENST00000293778|CXCL16;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;ENSG00000124508|ENST00000356709|BTN2A2;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;ENSG00000132518|ENST00000254854|GUCY2D;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;ENSG00000166341|ENST00000299441|DCHS1;ENSG00000121316|ENST00000240617|PLBD1;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000083807|ENST00000263093|SLC27A5;ENSG00000087116|ENST00000251582|ADAMTS2;nc|ENSG00000087116|O95450-2|ADAMTS2;ENSG00000125810|ENST00000246006|CD93;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;LRP8|p.L926Pfs*37|1|0.1|ENSG00000157193|chr1:53249457-53249458|-/AGAAGAAAAATGG|frameshift_variant;ENSG00000157193|ENST00000306052|LRP8;nc|ENSG00000157193|Q14114-2|LRP8;ENSG00000165905|ENST00000401752|LARGE2;ENSG00000167680|ENST00000586582|SEMA6B;nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000184985|ENST00000507866|SORCS2;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000088812|ENST00000262919|ATRN;REV__ENSG00000083857|ENST00000441802|FAT1;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000083857|ENST00000441802|FAT1;ENSG00000161921|ENST00000293778|CXCL16;REV__nc|ENSG00000149451|Q9BZ11-2|ADAM33;REV__nc|ENSG00000129214|P04278-4|SHBG;REV__nc|ENSG00000290691|A6NGW2|STRCP1;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000149451|Q9BZ11-2|ADAM33;nc|ENSG00000054654|Q8WXH0-7|SYNE2;REV__ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000124508|ENST00000356709|BTN2A2;nc|ENSG00000290691|A6NGW2|STRCP1;REV__ENSG00000143126|ENST00000271332|CELSR2;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000115155|Q9HC10-4|OTOF;ENSG00000132518|ENST00000254854|GUCY2D;REV__nc|ENSG00000283706|Q9UI38|PRSS50;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000215644|ENST00000400723|GCGR;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000054654|ENST00000555002|SYNE2;ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000172071|ENST00000303236|EIF2AK3;REV__nc|ENSG00000150893|Q5SZK8-2|FREM2;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000087116|ENST00000251582|ADAMTS2;ENSG00000125810|ENST00000246006|CD93;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000150893|Q5SZK8-2|FREM2;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000165905|ENST00000401752|LARGE2;ENSG00000167680|ENST00000586582|SEMA6B;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000184985|ENST00000507866|SORCS2;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__ENSG00000088812|ENST00000262919|ATRN;REV__nc|ENSG00000104972|Q8NHL6|LILRB1;REV__ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000132518|ENST00000254854|GUCY2D;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000161610|ENST00000293330|HCRT;REV__ENSG00000162337|ENST00000294304|LRP5;REV__ENSG00000165905|ENST00000401752|LARGE2;REV__ENSG00000168056|ENST00000301873|LTBP3;REV__ENSG00000181790|ENST00000517894|ADGRB1;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000204583|ENST00000376608|LRCOL1;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF;REV__ENST00000462628.5_1_19:55146093-55147330:+|nuORF	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.2311096191406	2	462.348815	922.683077	0.10775	4.9817E-05	-0.045366	-2.0975E-05	0.062381	2.8842E-05	462.3487066947849	66.586	0.56765	66.586	66.369	66.937	0					31	19	2	0	0	0	0.31651	1	16714	16714		24.21	0	1	370610			23822	1234;692;13586;17310;10077;5288;7565;16515;2574;2610;6063;1330;1297;789;8554;16149;4480;2995;17691;7249;6198;6241;6745;14012;4927;16971;13940;3644;3161;5536;18931;19081;5157;16943;18954;18166;17435;15117;15576;17274;15711;8763;14432;8557;1229;7499;7489;7301;6010;3538;3230;20796;8264;23238;17799;4865;19189;15404;16462;8213;21232	13542	13543	29976	29976					0.21864231429651682
LLLLLLLL	8	Unmodified	_LLLLLLLL_					0	0	0		LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000185896|ENST00000332556|LAMP1;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000167925|Q8N2G8-3|GHDC;GP1BA|p.T494Nfs*4|1|0.36|ENSG00000185245|chr17:4934077-4934078|-/A|frameshift_variant;ENSG00000167925|ENST00000587427|GHDC;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;CON__ENSEMBL:ENSBTAP00000023055;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;ENSG00000167261|ENST00000393847|DPEP2;ENSG00000215644|ENST00000400723|GCGR;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000185245|ENST00000329125|GP1BA;ENSG00000184709|ENST00000371542|LRRC26;HGFAC|p.P341Rfs*12|1|0.67|ENSG00000109758|chr4:3445269-3445269|C/-|frameshift_variant;nc|ENSG00000204301|Q99466-3|NOTCH4;nc|ENSG00000129214|P04278-5|SHBG;nc|ENSG00000283706|Q9UI38|PRSS50;nc|ENSG00000167925|Q8N2G8-2|GHDC;ENSG00000104972|ENST00000324602|LILRB1;ENSG00000129214|ENST00000380450|SHBG;nc|ENSG00000054654|Q8WXH0-6|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000104972|Q8NHL6-4|LILRB1;ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000143434|Q9H3T2-3|SEMA6C;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000182272|ENST00000329962|B4GALNT4;ENSG00000172071|ENST00000303236|EIF2AK3;ENSG00000162337|ENST00000294304|LRP5;ENSG00000143434|ENST00000368914|SEMA6C;ENSG00000169174|ENST00000302118|PCSK9;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000204967|Q9UN74-2|PCDHA4;nc|ENSG00000167261|Q9H4A9-2|DPEP2;SEMA4B|p.N175Mfs*161|1|0.16|ENSG00000185033|chr15:90221007-90221008|-/GGACGAGAAGGGGATGTCCA|frameshift_variant;ENST00000530717.1_1_11:369803-372772:+|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000396904.2_2_7:5097383-5112677:+|nuORF;ENSG00000142538|ENST00000270631|PTH2;ENST00000522399.1_1_1:231090115-231114586:-|nuORF;ENSG00000070031|ENST00000176195|SCT;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;ENST00000268795.5_1_16:68025981-68027124:-|nuORF;ENSG00000161610|ENST00000293330|HCRT;nc|ENSG00000117899|Q14696-2|MESD;nc|ENSG00000135077|Q8TDQ0-2|HAVCR2;ENSG00000204583|ENST00000376608|LRCOL1;ENSG00000178473|ENST00000380433|UCN3;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000344924.7_1_7:134331590-134346213:+|nuORF;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;ENST00000393132.2_1_7:134331590-134343135:+|nuORF;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;ENST00000522902.1_1_5:156533605-156536090:-|nuORF;ENSG00000159189|ENST00000374640|C1QC;ENSG00000164897|ENST00000297533|TMUB1;nc|ENSG00000228789|E2RYF7|HCG22;ENSG00000184992|ENST00000341446|BRI3BP;ENSG00000109743|ENST00000265016|BST1;nc|ENSG00000001036|Q9BTY2-2|FUCA2;nc|ENSG00000182685|Q6PL45|BRICD5;ENSG00000137161|ENST00000372836|CNPY3;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;ENSG00000135077|ENST00000307851|HAVCR2;nc|ENSG00000167261|Q9H4A9-3|DPEP2;ENSG00000117899|ENST00000261758|MESD;ENSG00000183971|ENST00000566435|NPW;DPEP3|p.A194Vfs*2|1|0.35|ENSG00000141096|chr16:67978528-67978535|GTAGGAGG/-|frameshift_variant;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENSG00000109255|ENST00000264218|NMU;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;ENSG00000243364|ENST00000368409|EFNA4;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;ENSG00000182685|ENST00000328540|BRICD5;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-4|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.S1928Lfs*17|1|0.08|ENSG00000083857|chr4:186620804-186620804|A/-|frameshift_variant;ENSG00000161921|ENST00000293778|CXCL16;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;ENSG00000124508|ENST00000356709|BTN2A2;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;ENSG00000132518|ENST00000254854|GUCY2D;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;ENSG00000166341|ENST00000299441|DCHS1;ENSG00000121316|ENST00000240617|PLBD1;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000083807|ENST00000263093|SLC27A5;ENSG00000087116|ENST00000251582|ADAMTS2;nc|ENSG00000087116|O95450-2|ADAMTS2;ENSG00000125810|ENST00000246006|CD93;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;LRP8|p.L926Pfs*37|1|0.1|ENSG00000157193|chr1:53249457-53249458|-/AGAAGAAAAATGG|frameshift_variant;ENSG00000157193|ENST00000306052|LRP8;nc|ENSG00000157193|Q14114-2|LRP8;ENSG00000165905|ENST00000401752|LARGE2;ENSG00000167680|ENST00000586582|SEMA6B;nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000184985|ENST00000507866|SORCS2;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000088812|ENST00000262919|ATRN;REV__ENSG00000083857|ENST00000441802|FAT1;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000083857|ENST00000441802|FAT1;ENSG00000161921|ENST00000293778|CXCL16;REV__nc|ENSG00000149451|Q9BZ11-2|ADAM33;REV__nc|ENSG00000129214|P04278-4|SHBG;REV__nc|ENSG00000290691|A6NGW2|STRCP1;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000149451|Q9BZ11-2|ADAM33;nc|ENSG00000054654|Q8WXH0-7|SYNE2;REV__ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000124508|ENST00000356709|BTN2A2;nc|ENSG00000290691|A6NGW2|STRCP1;REV__ENSG00000143126|ENST00000271332|CELSR2;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000115155|Q9HC10-4|OTOF;ENSG00000132518|ENST00000254854|GUCY2D;REV__nc|ENSG00000283706|Q9UI38|PRSS50;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000215644|ENST00000400723|GCGR;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000054654|ENST00000555002|SYNE2;ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000172071|ENST00000303236|EIF2AK3;REV__nc|ENSG00000150893|Q5SZK8-2|FREM2;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000087116|ENST00000251582|ADAMTS2;ENSG00000125810|ENST00000246006|CD93;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000150893|Q5SZK8-2|FREM2;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000165905|ENST00000401752|LARGE2;ENSG00000167680|ENST00000586582|SEMA6B;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000184985|ENST00000507866|SORCS2;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__ENSG00000088812|ENST00000262919|ATRN;REV__nc|ENSG00000104972|Q8NHL6|LILRB1;REV__ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000132518|ENST00000254854|GUCY2D;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000161610|ENST00000293330|HCRT;REV__ENSG00000162337|ENST00000294304|LRP5;REV__ENSG00000165905|ENST00000401752|LARGE2;REV__ENSG00000168056|ENST00000301873|LTBP3;REV__ENSG00000181790|ENST00000517894|ADGRB1;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000204583|ENST00000376608|LRCOL1;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF;REV__ENST00000462628.5_1_19:55146093-55147330:+|nuORF	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.2309265136719	2	462.348815	922.683077	0.084524	3.908E-05	0.18715	8.653E-05	0.27168	0.00012561	462.34868352343085	66.471	0.57837	66.555	66.354	66.933	0.083832					42	20	3	0	0	0	0.29242	1	16604	16604		32.454	0	1	306790			23823	1234;692;13586;17310;10077;5288;7565;16515;2574;2610;6063;1330;1297;789;8554;16149;4480;2995;17691;7249;6198;6241;6745;14012;4927;16971;13940;3644;3161;5536;18931;19081;5157;16943;18954;18166;17435;15117;15576;17274;15711;8763;14432;8557;1229;7499;7489;7301;6010;3538;3230;20796;8264;23238;17799;4865;19189;15404;16462;8213;21232	13542	13543	29977	29977					0.21864231429651682
LLLLLLLL	8	Unmodified	_LLLLLLLL_					0	0	0		LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000185896|ENST00000332556|LAMP1;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000167925|Q8N2G8-3|GHDC;GP1BA|p.T494Nfs*4|1|0.36|ENSG00000185245|chr17:4934077-4934078|-/A|frameshift_variant;ENSG00000167925|ENST00000587427|GHDC;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;CON__ENSEMBL:ENSBTAP00000023055;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;ENSG00000167261|ENST00000393847|DPEP2;ENSG00000215644|ENST00000400723|GCGR;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000185245|ENST00000329125|GP1BA;ENSG00000184709|ENST00000371542|LRRC26;HGFAC|p.P341Rfs*12|1|0.67|ENSG00000109758|chr4:3445269-3445269|C/-|frameshift_variant;nc|ENSG00000204301|Q99466-3|NOTCH4;nc|ENSG00000129214|P04278-5|SHBG;nc|ENSG00000283706|Q9UI38|PRSS50;nc|ENSG00000167925|Q8N2G8-2|GHDC;ENSG00000104972|ENST00000324602|LILRB1;ENSG00000129214|ENST00000380450|SHBG;nc|ENSG00000054654|Q8WXH0-6|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000104972|Q8NHL6-4|LILRB1;ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000143434|Q9H3T2-3|SEMA6C;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000182272|ENST00000329962|B4GALNT4;ENSG00000172071|ENST00000303236|EIF2AK3;ENSG00000162337|ENST00000294304|LRP5;ENSG00000143434|ENST00000368914|SEMA6C;ENSG00000169174|ENST00000302118|PCSK9;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000204967|Q9UN74-2|PCDHA4;nc|ENSG00000167261|Q9H4A9-2|DPEP2;SEMA4B|p.N175Mfs*161|1|0.16|ENSG00000185033|chr15:90221007-90221008|-/GGACGAGAAGGGGATGTCCA|frameshift_variant;ENST00000530717.1_1_11:369803-372772:+|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000396904.2_2_7:5097383-5112677:+|nuORF;ENSG00000142538|ENST00000270631|PTH2;ENST00000522399.1_1_1:231090115-231114586:-|nuORF;ENSG00000070031|ENST00000176195|SCT;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;ENST00000268795.5_1_16:68025981-68027124:-|nuORF;ENSG00000161610|ENST00000293330|HCRT;nc|ENSG00000117899|Q14696-2|MESD;nc|ENSG00000135077|Q8TDQ0-2|HAVCR2;ENSG00000204583|ENST00000376608|LRCOL1;ENSG00000178473|ENST00000380433|UCN3;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000344924.7_1_7:134331590-134346213:+|nuORF;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;ENST00000393132.2_1_7:134331590-134343135:+|nuORF;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;ENST00000522902.1_1_5:156533605-156536090:-|nuORF;ENSG00000159189|ENST00000374640|C1QC;ENSG00000164897|ENST00000297533|TMUB1;nc|ENSG00000228789|E2RYF7|HCG22;ENSG00000184992|ENST00000341446|BRI3BP;ENSG00000109743|ENST00000265016|BST1;nc|ENSG00000001036|Q9BTY2-2|FUCA2;nc|ENSG00000182685|Q6PL45|BRICD5;ENSG00000137161|ENST00000372836|CNPY3;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;ENSG00000135077|ENST00000307851|HAVCR2;nc|ENSG00000167261|Q9H4A9-3|DPEP2;ENSG00000117899|ENST00000261758|MESD;ENSG00000183971|ENST00000566435|NPW;DPEP3|p.A194Vfs*2|1|0.35|ENSG00000141096|chr16:67978528-67978535|GTAGGAGG/-|frameshift_variant;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENSG00000109255|ENST00000264218|NMU;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;ENSG00000243364|ENST00000368409|EFNA4;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;ENSG00000182685|ENST00000328540|BRICD5;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-4|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENSG00000083857|ENST00000441802|FAT1;FAT1|p.S1928Lfs*17|1|0.08|ENSG00000083857|chr4:186620804-186620804|A/-|frameshift_variant;ENSG00000161921|ENST00000293778|CXCL16;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;ENSG00000124508|ENST00000356709|BTN2A2;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;ENSG00000132518|ENST00000254854|GUCY2D;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;ENSG00000166341|ENST00000299441|DCHS1;ENSG00000121316|ENST00000240617|PLBD1;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000083807|ENST00000263093|SLC27A5;ENSG00000087116|ENST00000251582|ADAMTS2;nc|ENSG00000087116|O95450-2|ADAMTS2;ENSG00000125810|ENST00000246006|CD93;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2;nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;LRP8|p.L926Pfs*37|1|0.1|ENSG00000157193|chr1:53249457-53249458|-/AGAAGAAAAATGG|frameshift_variant;ENSG00000157193|ENST00000306052|LRP8;nc|ENSG00000157193|Q14114-2|LRP8;ENSG00000165905|ENST00000401752|LARGE2;ENSG00000167680|ENST00000586582|SEMA6B;nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000184985|ENST00000507866|SORCS2;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000088812|ENST00000262919|ATRN;REV__ENSG00000083857|ENST00000441802|FAT1;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000064601|P10619-2|CTSA;ENSG00000083857|ENST00000441802|FAT1;ENSG00000161921|ENST00000293778|CXCL16;REV__nc|ENSG00000149451|Q9BZ11-2|ADAM33;REV__nc|ENSG00000129214|P04278-4|SHBG;REV__nc|ENSG00000290691|A6NGW2|STRCP1;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000149451|Q9BZ11-2|ADAM33;nc|ENSG00000054654|Q8WXH0-7|SYNE2;REV__ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000124508|ENST00000356709|BTN2A2;nc|ENSG00000290691|A6NGW2|STRCP1;REV__ENSG00000143126|ENST00000271332|CELSR2;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000115155|Q9HC10-4|OTOF;ENSG00000132518|ENST00000254854|GUCY2D;REV__nc|ENSG00000283706|Q9UI38|PRSS50;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000215644|ENST00000400723|GCGR;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000054654|ENST00000555002|SYNE2;ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000172071|ENST00000303236|EIF2AK3;REV__nc|ENSG00000150893|Q5SZK8-2|FREM2;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000087116|ENST00000251582|ADAMTS2;ENSG00000125810|ENST00000246006|CD93;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000150893|Q5SZK8-2|FREM2;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000165905|ENST00000401752|LARGE2;ENSG00000167680|ENST00000586582|SEMA6B;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000184985|ENST00000507866|SORCS2;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__ENSG00000088812|ENST00000262919|ATRN;REV__nc|ENSG00000104972|Q8NHL6|LILRB1;REV__ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000132518|ENST00000254854|GUCY2D;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000161610|ENST00000293330|HCRT;REV__ENSG00000162337|ENST00000294304|LRP5;REV__ENSG00000165905|ENST00000401752|LARGE2;REV__ENSG00000168056|ENST00000301873|LTBP3;REV__ENSG00000181790|ENST00000517894|ADGRB1;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000204583|ENST00000376608|LRCOL1;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF;REV__ENST00000462628.5_1_19:55146093-55147330:+|nuORF	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.2309875488281	2	462.348815	922.683077	0.090366	4.1781E-05	0.13413	6.2016E-05	0.2245	0.0001038	462.34875434495274	66.64	0.60448	66.627	66.379	66.984	-0.013588					42	21	3	0	0	0	0.26384	1	16679	16679		41.817	0	1	282580			23824	1234;692;13586;17310;10077;5288;7565;16515;2574;2610;6063;1330;1297;789;8554;16149;4480;2995;17691;7249;6198;6241;6745;14012;4927;16971;13940;3644;3161;5536;18931;19081;5157;16943;18954;18166;17435;15117;15576;17274;15711;8763;14432;8557;1229;7499;7489;7301;6010;3538;3230;20796;8264;23238;17799;4865;19189;15404;16462;8213;21232	13542	13543	29978	29978					0.21864231429651682
LLLLPRALS	9	Unmodified	_LLLLPRALS_					0	0	0		ENST00000409117.7_1_2:179316324-179318191:+|nuORF	ENST00000409117.7_1_2:179316324-179318191:+|nuORF	ENST00000409117.7_1_2:179316324-179318191:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7561950683594	2	498.334227	994.653902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.063	1	71.124	70.624	71.624	0.060783								0	0	0	0.21357	1	18038	18038		18.135	0	1				23825	10239	13543	13544	29979	29979					0.15636087133384535
LLLLQENAF	9	Unmodified	_LLLLQENAF_					0	0	0			REV__ENST00000479053.1_1_9:36036974-36085209:+|nuORF	REV__ENST00000479053.1_1_9:36036974-36085209:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7694091796875	2	530.8055	1059.59645	0.79425	0.00042159	0.13747	7.297E-05	0.93172	0.00049456	530.8052277839595	47.66	0.2155	47.704	47.53	47.746	0.04332					11	7	2	0	0	0	0.25526	1	10786	10786		7.9102	0	1	158510	+		23826	21461	13544	13545	29980	29980					0.06903200137116983
LLLLVMALPP	10	Unmodified	_LLLLVMALPP_					0	0	0		ENSG00000177202|ENST00000321762|SPACA4	ENSG00000177202|ENST00000321762|SPACA4	ENSG00000177202|ENST00000321762|SPACA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.9852905273438	2	540.348489	1078.68242	0.33705	0.00018212	-0.30598	-0.00016533	0.031068	1.6787E-05	540.3481736440398	96.376	0.71054	96.454	96.107	96.817	0.077415					165	70	3	0	0	0	0.32112	1	25756	25756		1.8442	1.8442	1	570570			23827	6974	13545	13546	29981	29981					0.14623068718287868
LLLLVMALPP	10	Unmodified	_LLLLVMALPP_					0	0	0		ENSG00000177202|ENST00000321762|SPACA4	ENSG00000177202|ENST00000321762|SPACA4	ENSG00000177202|ENST00000321762|SPACA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3483276367188	2	540.348489	1078.68242	0.5724	0.0003093	-0.46975	-0.00025383	0.10265	5.5467E-05	540.3480858871494	96.462	0.79553	96.457	96.178	96.973	-0.0055466					174	78	3	0	0	0	0.40888	1	25744	25744		1.8442	1.8442	1	641290			23828	6974	13545	13546	29982	29982					0.14623068718287868
LLLLVMALPP	10	Unmodified	_LLLLVMALPP_					0	0	0		ENSG00000177202|ENST00000321762|SPACA4	ENSG00000177202|ENST00000321762|SPACA4	ENSG00000177202|ENST00000321762|SPACA4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	540.348489	1078.68242	0.21116	0.0001141	-0.15871	-8.5758E-05	0.052453	2.8343E-05	540.3482282112046	96.491	0.63283	96.491	96.21	96.843	0	0.024206	0.00019907	NaN	1.8442	140	61	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338400			23829	6974	13545	13546							0.14623068718287868
LLLLVMALPP	10	Unmodified	_LLLLVMALPP_					0	0	0		ENSG00000177202|ENST00000321762|SPACA4	ENSG00000177202|ENST00000321762|SPACA4	ENSG00000177202|ENST00000321762|SPACA4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	540.348489	1078.68242	0.5724	0.0003093	-0.46975	-0.00025383	0.10265	5.5467E-05	540.3480858871494	96.462	0.79553	96.457	96.178	96.973	-0.0055466	-0.010602	-0.00013707	NaN	1.8442	174	78	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	641290			23830	6974	13545	13546							0.14623068718287868
LLLNQPSLS	9	Unmodified	_LLLNQPSLS_					0	0	0			REV__ENST00000358321.3_1_22:24580211-24581108:+|nuORF	REV__ENST00000358321.3_1_22:24580211-24581108:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.81744384765625	2	492.78985	983.565146	0.37103	0.00018284	0.24953	0.00012296	0.62056	0.0003058	492.78990523934226	64.88	0.2334	64.88	64.727	64.96	0					11	8	2	0	0	0	0.24311	1	16152	16152		11.64	0.81637	1	79817	+		23831	20231	13546	13547	29983	29983					0.07270627103048355
LLLPAGCRAL	10	Unmodified	_LLLPAGCRAL_					0	0	0		ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	ENSG00000182580|ENST00000330394|EPHB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2743530273438	2	513.810062	1025.60557	0.54384	0.00027943	-2.5799	-0.0013256	-2.0361	-0.0010462	513.8085970710155	54.89	0.71688	54.874	54.415	55.132	-0.015919					41	25	2	0	0	0	0.3156	1	12928	12928		3.5965	0	1	331830			23832	7302	13547	13548	29984	29984					0.09379270221802471
LLLPGFHRH	9	Unmodified	_LLLPGFHRH_					0	0	0		ENST00000263856.8_1_2:86732371-86732512:-|nuORF	ENST00000263856.8_1_2:86732371-86732512:-|nuORF	ENST00000263856.8_1_2:86732371-86732512:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3175048828125	2	545.319443	1088.62433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.57	1	112.58	112.08	113.08	0.0131								0	0	0	0.26334	1	29294	29294		2.0598	0.40713	1				23833	9016	13548	13549	29985	29985					0.08356567907890167
LLLPPVETRR	10	Unmodified	_LLLPPVETRR_					0	0	0			REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3733520507812	2	597.371872	1192.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.841	1	99.841	99.341	100.34	0								0	0	0	0.38166	1	26698	26698		1.4819	0	1		+		23834	15818	13549	13550	29986	29986					0.14053644593764147
LLLPPVETRR	10	Unmodified	_LLLPPVETRR_					0	0	0			REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	REV__nc|ENSG00000136631|Q9NRW7-2|VPS45	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.3734130859375	2	597.371872	1192.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.785	1	99.779	99.279	100.28	-0.006897								0	0	0	0.38166	1	26715	26715		1.4819	0	1		+		23835	15818	13549	13550	29987	29987					0.14053644593764147
LLLPVKLGA	9	Unmodified	_LLLPVKLGA_					0	0	0			REV__nc|ENSG00000116830|Q9UNY4-2|TTF2	REV__nc|ENSG00000116830|Q9UNY4-2|TTF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.8260498046875	2	462.318046	922.621539	-0.0019351	-8.9462E-07	0.11047	5.1074E-05	0.10854	5.0179E-05	462.3180216247954	67.198	0.58386	67.181	66.839	67.423	-0.016296					35	19	3	0	0	0	0.24913	1	16777	16777		12.532	1.4171	1	269980	+		23836	14943	13550	13551	29988	29988					0.15713299730384733
LLLPVKLGA	9	Unmodified	_LLLPVKLGA_					0	0	0			REV__nc|ENSG00000116830|Q9UNY4-2|TTF2	REV__nc|ENSG00000116830|Q9UNY4-2|TTF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	462.318046	922.621539	-0.0049768	-2.3009E-06	0.27013	0.00012489	0.26515	0.00012259	462.31803247264634	67.055	0.59036	67.134	66.871	67.461	0.078041	-0.017858	6.7959E-05	NaN	12.532	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262130	+		23837	14943	13550	13551							0.15713299730384733
LLLPVPVSV	9	Unmodified	_LLLPVPVSV_					0	0	0			REV__ENST00000368680.3_1_1:153651402-153651519:+|nuORF	REV__ENST00000368680.3_1_1:153651402-153651519:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.8100280761719	2	468.810054	935.605554	0.26736	0.00012534	-0.16668	-7.8143E-05	0.10068	4.7197E-05	468.80982376373896	83.44	0.57078	83.517	83.302	83.873	0.077095					34	22	2	0	0	0	0.24581	1	21856	21856		16.942	5.302	1	134080	+		23838	20345	13551	13552	29989	29989					0.13517593493475033
LLLPVPVSV	9	Unmodified	_LLLPVPVSV_					0	0	0			REV__ENST00000368680.3_1_1:153651402-153651519:+|nuORF	REV__ENST00000368680.3_1_1:153651402-153651519:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	468.810054	935.605554	0.31469	0.00014753	-0.23113	-0.00010836	0.083561	3.9174E-05	468.8099097491103	83.609	0.46155	83.609	83.373	83.835	0	0.017473	-3.7497E-05	NaN	16.942	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196040	+		23839	20345	13551	13552							0.13517593493475033
LLLPVPVSV	9	Unmodified	_LLLPVPVSV_					0	0	0			REV__ENST00000368680.3_1_1:153651402-153651519:+|nuORF	REV__ENST00000368680.3_1_1:153651402-153651519:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	468.810054	935.605554	0.26736	0.00012534	-0.16668	-7.8143E-05	0.10068	4.7197E-05	468.80982376373896	83.44	0.57078	83.517	83.302	83.873	0.077095	-0.074988	2.2928E-05	NaN	16.942	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134080	+		23840	20345	13551	13552							0.13517593493475033
LLLPVPVSV	9	Unmodified	_LLLPVPVSV_					0	0	0			REV__ENST00000368680.3_1_1:153651402-153651519:+|nuORF	REV__ENST00000368680.3_1_1:153651402-153651519:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	468.810054	935.605554	0.41725	0.00019561	-0.15746	-7.3818E-05	0.2598	0.00012179	468.8098481876202	83.666	0.46149	83.649	83.375	83.837	-0.01683	0.057515	3.1577E-05	NaN	16.942	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124270	+		23841	20345	13551	13552							0.13517593493475033
LLLQLAPAL	9	Unmodified	_LLLQLAPAL_					0	0	0			REV__ENSG00000174326|ENST00000574600|SLC16A11	REV__ENSG00000174326|ENST00000574600|SLC16A11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.75286865234375	2	476.315503	950.616454	-0.14063	-6.6985E-05	0.088277	4.2048E-05	-0.052354	-2.4937E-05	476.3155618962905	59.868	0.50277	59.868	59.533	60.035	0					29	17	2	0	0	0	0.24739	1	14556	14556		13.508	4.9146	1	516170	+		23842	17825	13552	13553	29990	29990					0.13916995867759852
LLLQLAPAL	9	Unmodified	_LLLQLAPAL_					0	0	0			REV__ENSG00000174326|ENST00000574600|SLC16A11	REV__ENSG00000174326|ENST00000574600|SLC16A11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.3078308105469	2	476.315503	950.616454	0.26551	0.00012647	-0.23221	-0.0001106	0.033306	1.5864E-05	476.31531818241683	59.748	0.62466	59.737	59.372	59.997	-0.011486					35	21	2	0	0	0	0.26879	1	14593	14593		13.508	0.97634	1	455460	+		23843	17825	13552	13553	29991	29991					0.13916995867759852
LLLRRRTG	8	Unmodified	_LLLRRRTG_					0	0	0			REV__ENSG00000177427|ENST00000323019|MIEF2	REV__ENSG00000177427|ENST00000323019|MIEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.8174743652344	2	492.824892	983.635232	0.56335	0.00027763	1.3587	0.00066962	1.9221	0.00094725	492.82571071898377	63.936	1.3133	63.936	63.413	64.727	0					79	47	3	0	0	0	0.42446	1	16105	16105		14.582	0	1	279500	+		23844	17989	13553	13554	29992	29992					0.142759702821877
LLLSASLPF	9	Unmodified	_LLLSASLPF_					0	0	0			REV__ENST00000565677.5_1_16:732528-732699:+|nuORF	REV__ENST00000565677.5_1_16:732528-732699:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2793273925781	2	480.791861	959.569169	0.35472	0.00017055	-0.73689	-0.00035429	-0.38218	-0.00018375	480.7914481570287	82.792	0.45477	82.865	82.651	83.106	0.073097					26	17	2	0	0	0	0.11486	1	21626	21626		48.346	6.2513	1	159460	+		23845	22361	13554	13555	29993	29993					0.08776716596753431
LLLSASLPF	9	Unmodified	_LLLSASLPF_					0	0	0			REV__ENST00000565677.5_1_16:732528-732699:+|nuORF	REV__ENST00000565677.5_1_16:732528-732699:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	480.791861	959.569169	0.41594	0.00019998	-0.49846	-0.00023966	-0.082517	-3.9674E-05	480.7916649970598	82.836	0.46049	82.815	82.646	83.106	-0.020584	-0.024732	0.00013462	NaN	48.346	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153590	+		23846	22361	13554	13555							0.08776716596753431
LLLSHTSII	9	Unmodified	_LLLSHTSII_					0	0	0			REV__nc|ENSG00000145703|Q13576-3|IQGAP2	REV__nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2590637207031	2	498.808042	995.601532	0.59834	0.00029846	-0.71288	-0.00035559	-0.11453	-5.7131E-05	498.8077200988138	56.65	0.42129	56.729	56.513	56.935	0.078671					24	15	2	0	0	0	0.19839	1	13567	13567		28.487	0	1	279720	+		23847	16299	13555	13556	29994	29994					0.1035550399976728
LLLSPRALL	9	Unmodified	_LLLSPRALL_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3344421386719	2	498.334227	994.653902	0.3947	0.00019669	0.0042454	2.1156E-06	0.39895	0.00019881	498.3342605778695	67.343	0.56468	67.421	67.122	67.687	0.078041					80	19	5	0	0	0	0.057976	1	16942	16942		49.933	0	1	12521000	+		23848	14510	13556	13557	29995	29995					0.15636087133384535
LLLSPRALL	9	Unmodified	_LLLSPRALL_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7826843261719	2	498.334227	994.653902	0.39044	0.00019457	0.0046952	2.3398E-06	0.39513	0.00019691	498.3341247976464	75.608	1.3163	75.66	74.703	76.019	0.052361					63	48	2	0	0	0	0.24471	1	19421	19421		17.113	3.2068	1	194440	+		23849	14510	13556	13557	29996	29996					0.15636087133384535
LLLSVGDLVF	10	Unmodified	_LLLSVGDLVF_					0	0	0			REV__ENST00000409858.7_1_9:139978422-139978698:+|nuORF	REV__ENST00000409858.7_1_9:139978422-139978698:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.8078002929688	2	538.323525	1074.6325	0.41639	0.00022415	-0.5105	-0.00027481	-0.09411	-5.0662E-05	538.321381615278	92.568	0.071365	92.568	92.529	92.6	0					7	5	2	0	0	0	0.3156	1	24623	24623		10.824	3.5347	1	29620	+		23850	20768	13557	13558	29997	29997					0.09816657314013355
LLLSVLKGGK	10	Unmodified	_LLLSVLKGGK_					0	0	0		ENST00000394129.6_1_15:99785679-99791400:-|nuORF;ENST00000558663.5_1_15:99768880-99791424:-|nuORF	ENST00000394129.6_1_15:99785679-99791400:-|nuORF	ENST00000394129.6_1_15:99785679-99791400:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8092041015625	2	514.347335	1026.68012	0.28972	0.00014902	-0.43563	-0.00022407	-0.14591	-7.505E-05	514.347092862763	42.985	0.46491	43.07	42.834	43.299	0.085201					21	16	2	0	0	0	0.31629	1	9409	9409		0.30703	0.30703	1	162150			23851	10064	13558	13559	29998	29998					0.16784356304856374
LLLVHRFLP	9	Unmodified	_LLLVHRFLP_					0	0	0		ENSG00000179913|ENST00000318683|B3GNT3	ENSG00000179913|ENST00000318683|B3GNT3	ENSG00000179913|ENST00000318683|B3GNT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.245361328125	2	554.355494	1106.69644	0.45938	0.00025466	0.34292	0.0001901	0.8023	0.00044476	554.3555890557313	36.495	1.0091	36.577	36.233	37.242	0.082359					84	36	3	0	0	0	0.26145	1	7468	7468		2.0598	0	1	321660			23852	7153	13559	13560	29999	29999					0.14735482261608013
LLLVKGAP	8	Unmodified	_LLLVKGAP_					0	0	0		ENST00000506951.5_1_4:20711306-20720453:+|nuORF;nc|ENSG00000163138|Q8N7B6-4|PACRGL;nc|ENSG00000163138|Q8N7B6-2|PACRGL;ENSG00000163138|ENST00000503585|PACRGL	ENST00000506951.5_1_4:20711306-20720453:+|nuORF	ENST00000506951.5_1_4:20711306-20720453:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.21923828125	2	405.776014	809.537475	-0.45477	-0.00018453	2.9839	0.0012108	2.5292	0.0010263	405.7770906854967	27.77	0.22392	27.759	27.584	27.808	-0.011562					10	7	2	0	0	0	0.34434	1	4743	4743		0.79363	0	1	33057			23853	5652	13560	13561	30000	30000					0.125087686334723
LLLWMLPDT	9	Unmodified	_LLLWMLPDT_					0	0	0		ENSG00000244486|ENST00000622235|SCARF2;nc|ENSG00000244486|Q96GP6|SCARF2	ENSG00000244486|ENST00000622235|SCARF2	ENSG00000244486|ENST00000622235|SCARF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.3043823242188	2	551.304278	1100.594	0.70571	0.00038906	-0.14227	-7.8436E-05	0.56344	0.00031063	551.3040919307712	20.445	0.48651	20.392	20.151	20.638	-0.052912					28	17	2	0	0	0	0.33018	1	2557	2557		4.3292	0	1	156880			23854	8572	13561	13562	30001	30001					0.04773028407817037
LLLWPLPF	8	Unmodified	_LLLWPLPF_					0	0	0		ENST00000334370.8_1_19:42840288-42840357:+|nuORF	ENST00000334370.8_1_19:42840288-42840357:+|nuORF	ENST00000334370.8_1_19:42840288-42840357:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.80712890625	2	499.807314	997.600075	0.38594	0.0001929	-0.48605	-0.00024293	-0.10011	-5.0033E-05	499.8072325427947	69.233	0.62134	69.299	68.958	69.579	0.06604					51	21	3	0	0	0	0.43455	1	17458	17458		11.114	0	1	438570			23855	9468	13562	13563	30002	30002					0.10117914701663722
LLLWRWDRILY	11	Unmodified	_LLLWRWDRILY_					0	0	0			REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7	REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7849731445312	3	516.301278	1545.882	-0.11342	-5.8561E-05	-0.011709	-6.0455E-06	-0.12513	-6.4607E-05	516.301189618267	34.397	0.31335	34.475	34.22	34.533	0.077377					18	10	2	0	0	0	0.33351	1	6754	6754		0.094841	0.094841	1	123460	+		23856	23005	13563	13564	30003	30003					0.1308983999042539
LLLWVKSI	8	Unmodified	_LLLWVKSI_					0	0	0		ENST00000520364.1_1_6:109309715-109314184:-|nuORF	ENST00000520364.1_1_6:109309715-109314184:-|nuORF	ENST00000520364.1_1_6:109309715-109314184:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80023193359375	2	486.318046	970.621539	0.36155	0.00017583	1.138	0.00055343	1.4996	0.00072926	486.3184730049354	68.604	0.90727	68.585	68.014	68.921	-0.019157					56	32	2	0	0	0	0.34185	1	17132	17132		2.5775	0	1	1197800			23857	11474	13564	13565	30004	30004					0.13505299730377374
LLLYAPVGFC	10	Unmodified	_LLLYAPVGFC_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000472800.1_1_2:74756265-74756756:-|nuORF;ENST00000463900.5_1_2:74756150-74756756:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1	nc|ENSG00000115307|Q9Y679-3|AUP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7608642578125	2	548.298996	1094.58344	0.77705	0.00042605	2.9301	0.0016066	3.7072	0.0020326	548.3003685485738	20.596	0.3199	20.486	20.379	20.699	-0.11003					14	10	2	0	0	0	0.3198	1	2581	2581		4.3292	0	1	61655			23858	2632	13565	13566	30005	30005					0.03993045753395563
LLLYLTFLES	10	Unmodified	_LLLYLTFLES_					0	0	0			REV__nc|ENSG00000178038|Q60I27-5|ALS2CL	REV__nc|ENSG00000178038|Q60I27-5|ALS2CL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3701171875	2	606.34974	1210.68493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.27	1	117.25	116.75	117.75	-0.024147								0	0	0	0.38209	1	30361	30361		0	0	1		+		23859	18013	13566	13567	30006	30006					0.0880119565692894
LLLYLTFLES	10	Unmodified	_LLLYLTFLES_					0	0	0			REV__nc|ENSG00000178038|Q60I27-5|ALS2CL	REV__nc|ENSG00000178038|Q60I27-5|ALS2CL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3706665039062	2	606.34974	1210.68493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.82	1	117.8	117.3	118.3	-0.024147								0	0	0	0.38209	1	30482	30482		0	0	1		+		23860	18013	13566	13567	30007	30007					0.0880119565692894
LLMDEPGF	8	Unmodified	_LLMDEPGF_					0	0	0			REV__CC2D1B|p.D819Efs*10|1|0.26|ENSG00000154222|chr1:52353633-52353639|CCTTCCA/-|frameshift_variant	REV__CC2D1B|p.D819Efs*10|1|0.26|ENSG00000154222|chr1:52353633-52353639|CCTTCCA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.2653503417969	2	461.222954	920.431355	0.30963	0.00014281	-0.98496	-0.00045429	-0.67533	-0.00031148	461.22240517611016	82.796	0.57689	82.775	82.45	83.027	-0.020584					30	22	2	0	0	0	0.34046	1	21654	21654		14.582	0	1	143230	+		23861	13138	13567	13568	30008	30008					-0.032043549941590754
LLMDEPGF	8	Unmodified	_LLMDEPGF_					0	0	0			REV__CC2D1B|p.D819Efs*10|1|0.26|ENSG00000154222|chr1:52353633-52353639|CCTTCCA/-|frameshift_variant	REV__CC2D1B|p.D819Efs*10|1|0.26|ENSG00000154222|chr1:52353633-52353639|CCTTCCA/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	461.222954	920.431355	0.19346	8.9227E-05	-0.35343	-0.00016301	-0.15997	-7.3781E-05	461.22289883349043	82.733	0.38167	82.733	82.462	82.844	0	5.9816E-05	0.00016008	NaN	14.582	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105980	+		23862	13138	13567	13568							-0.032043549941590754
LLMDEPGF	8	Unmodified	_LLMDEPGF_					0	0	0			REV__CC2D1B|p.D819Efs*10|1|0.26|ENSG00000154222|chr1:52353633-52353639|CCTTCCA/-|frameshift_variant	REV__CC2D1B|p.D819Efs*10|1|0.26|ENSG00000154222|chr1:52353633-52353639|CCTTCCA/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	461.222954	920.431355	0.1328	6.1251E-05	-0.47361	-0.00021844	-0.34081	-0.00015719	461.22269086139585	82.617	0.521	82.691	82.378	82.899	0.073097	-0.04227	4.9212E-05	NaN	14.582	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192790	+		23863	13138	13567	13568							-0.032043549941590754
LLMHFWILF	9	Unmodified	_LLMHFWILF_					0	0	0			REV__ENST00000536398.5_1_12:109927798-109928349:+|nuORF	REV__ENST00000536398.5_1_12:109927798-109928349:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.7370910644531	3	407.228062	1218.66236	-0.17942	-7.3066E-05	-1.0246	-0.00041725	-1.204	-0.00049031	407.2276436193139	67.15	0.91786	67.134	66.893	67.811	-0.016304					42	31	2	0	0	0	0.25811	1	16786	16786		1.1933	0.41681	1	203750	+		23864	22081	13568	13569	30009	30009					0.06177317778337965
LLMKQALEF	9	Unmodified	_LLMKQALEF_					0	0	0		nc|ENSG00000135436|Q8IYM0-2|FAM186B;ENST00000533372.1_1_12:49976813-49999059:-|nuORF;ENSG00000135436|ENST00000257894|FAM186B	nc|ENSG00000135436|Q8IYM0-2|FAM186B	nc|ENSG00000135436|Q8IYM0-2|FAM186B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7977905273438	2	546.809728	1091.6049	0.94278	0.00051552	-2.2562	-0.0012337	-1.3134	-0.00071821	546.8083375849509	55.879	0.45554	55.95	55.592	56.048	0.070885					35	16	3	0	0	0	0.26879	1	13351	13351		13.508	0	1	490300			23865	3875	13569	13570	30010	30010					0.06276430782099851
LLMKQALEF	9	Unmodified	_LLMKQALEF_					0	0	0		nc|ENSG00000135436|Q8IYM0-2|FAM186B;ENST00000533372.1_1_12:49976813-49999059:-|nuORF;ENSG00000135436|ENST00000257894|FAM186B	nc|ENSG00000135436|Q8IYM0-2|FAM186B	nc|ENSG00000135436|Q8IYM0-2|FAM186B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	546.809728	1091.6049	1.0282	0.00056222	-2.3407	-0.0012799	-1.3125	-0.00071769	546.8083210519218	55.939	0.48002	55.939	55.594	56.074	0	-0.01768	-0.00055594	NaN	13.508	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463920			23866	3875	13569	13570							0.06276430782099851
LLMKQALEF	9	Unmodified	_LLMKQALEF_					0	0	0		nc|ENSG00000135436|Q8IYM0-2|FAM186B;ENST00000533372.1_1_12:49976813-49999059:-|nuORF;ENSG00000135436|ENST00000257894|FAM186B	nc|ENSG00000135436|Q8IYM0-2|FAM186B	nc|ENSG00000135436|Q8IYM0-2|FAM186B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	546.809728	1091.6049	0.97826	0.00053492	-1.305	-0.00071359	-0.32674	-0.00017867	546.808884915085	56	0.51348	55.981	55.646	56.159	-0.019077	0.024238	0.00057671	NaN	13.508	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	529100			23867	3875	13569	13570							0.06276430782099851
LLMKRRIF	8	Unmodified	_LLMKRRIF_					0	0	0			REV__ENSG00000103740|ENST00000258873|ACSBG1	REV__ENSG00000103740|ENST00000258873|ACSBG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8634033203125	2	538.841697	1075.66884	0.31292	0.00016861	4.192	0.0022588	4.5049	0.0024274	538.844085141609	73.594	0.19154	73.647	73.47	73.661	0.052361					10	6	2	0	0	0	0.33995	1	18790	18790		15.768	2.2603	1	311980	+		23868	14384	13570	13571	30011	30011					0.13403255729713237
LLMRPIIC	8	Unmodified	_LLMRPIIC_					0	0	0		nc|ENSG00000127586|Q8WVB6-2|CHTF18;ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-3|CHTF18	nc|ENSG00000127586|Q8WVB6-2|CHTF18	nc|ENSG00000127586|Q8WVB6-2|CHTF18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7602233886719	2	479.782459	957.550365	-0.040813	-1.9581E-05	0.21014	0.00010082	0.16932	8.1239E-05	479.7820425833926	15.719	0.080082	15.719	15.654	15.734	0					4	2	2	0	0	0	0.34434	1	1107	1107		0.79363	0	1	6509.8			23869	3331	13571	13572	30012	30012					0.0698914042970955
LLMVLVLCI	9	Unmodified	_LLMVLVLCI_					0	0	0		nc|ENSG00000214517|Q9Y570-3|PPME1;ENST00000541340.5_1_11:73950145-73962300:+|nuORF	nc|ENSG00000214517|Q9Y570-3|PPME1	nc|ENSG00000214517|Q9Y570-3|PPME1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7819519042969	2	508.815967	1015.61738	0.74742	0.0003803	0.038595	1.9638E-05	0.78601	0.00039993	508.8158802291782	37.382	0.49924	37.382	37.207	37.707	0					22	17	2	0	0	0	0.25811	1	7758	7758		5.2307	0	1	152110			23870	11730	13572	13573	30013	30013					0.11019750920786464
LLNALILKN	9	Unmodified	_LLNALILKN_					0	0	0		ENSG00000034971.17,MYOC,chr1,-,I2.1,171638723,171643387|135|9.66|1|intron	ENSG00000034971.17,MYOC,chr1,-,I2.1,171638723,171643387|135|9.66|1|intron	ENSG00000034971.17,MYOC,chr1,-,I2.1,171638723,171643387|135|9.66|1|intron	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7947692871094	2	506.331685	1010.64882	0.24144	0.00012225	0.67936	0.00034398	0.92081	0.00046623	506.33208109732124	69.909	0.50674	69.909	69.703	70.209	0					27	18	2	0	0	0	0.25066	1	17753	17753		11.64	11.64	1	215030			23871	571	13573	13574	30014	30014					0.14391783270752967
LLNALILKN	9	Unmodified	_LLNALILKN_					0	0	0		ENSG00000034971.17,MYOC,chr1,-,I2.1,171638723,171643387|135|9.66|1|intron	ENSG00000034971.17,MYOC,chr1,-,I2.1,171638723,171643387|135|9.66|1|intron	ENSG00000034971.17,MYOC,chr1,-,I2.1,171638723,171643387|135|9.66|1|intron	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.331685	1010.64882	0.27193	0.00013769	-0.17053	-8.6344E-05	0.1014	5.1343E-05	506.3319177941764	69.916	0.54234	69.894	69.621	70.163	-0.022087	-0.022785	-0.00058814	NaN	11.64	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152790			23872	571	13573	13574							0.14391783270752967
LLNANRRKI	9	Unmodified	_LLNANRRKI_					0	0	0		nc|ENSG00000179873|P59045-3|NLRP11;nc|ENSG00000179873|P59045-2|NLRP11;ENSG00000179873|ENST00000589093|NLRP11	nc|ENSG00000179873|P59045-3|NLRP11	nc|ENSG00000179873|P59045-3|NLRP11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7789306640625	2	549.348732	1096.68291	0.51492	0.00028287	-0.38466	-0.00021131	0.13026	7.156E-05	549.3485011477765	29.419	0.3814	29.431	29.272	29.654	0.012266					16	12	2	0	0	0	0.25938	1	5274	5274		4.3292	0.38484	1	78654			23873	7149	13574	13575	30015	30015					0.13843624482365158
LLNANRRKI	9	Unmodified	_LLNANRRKI_					0	0	0		nc|ENSG00000179873|P59045-3|NLRP11;nc|ENSG00000179873|P59045-2|NLRP11;ENSG00000179873|ENST00000589093|NLRP11	nc|ENSG00000179873|P59045-3|NLRP11	nc|ENSG00000179873|P59045-3|NLRP11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	549.348732	1096.68291	0.59357	0.00032608	-0.10122	-5.5607E-05	0.49235	0.00027047	549.348648155891	29.505	0.36131	29.505	29.324	29.686	0	0.010717	5.8018E-05	NaN	4.3292	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94867			23874	7149	13574	13575							0.13843624482365158
LLNARYYK	8	Unmodified	_LLNARYYK_					0	0	0		ENST00000499077.2_2_3:131082982-131083279:+|nuORF	ENST00000499077.2_2_3:131082982-131083279:+|nuORF	ENST00000499077.2_2_3:131082982-131083279:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2684936523438	2	520.798009	1039.58147	0.35111	0.00018286	-0.67989	-0.00035409	-0.32877	-0.00017123	520.7977467038395	32.888	0.22485	32.943	32.818	33.042	0.054375					12	7	2	0	0	0	0.33993	1	6317	6317		16.942	2.104	1	118320			23875	11258	13575	13576	30016	30016					0.06325753059786621
LLNEDYHWY	9	Unmodified	_LLNEDYHWY_					0	0	0			REV__ENSG00000109586|ENST00000265000|GALNT7	REV__ENSG00000109586|ENST00000265000|GALNT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.2662658691406	3	418.192623	1251.55604	0.13534	5.6597E-05	0.83266	0.00034821	0.968	0.00040481	418.192944073866	41.014	0.5801	41.105	40.876	41.456	0.090252					57	21	4	0	0	0	0.25811	1	8742	8742		1.1933	1.1933	1	758880	+		23876	14645	13576	13577	30017	30017					-0.05967766253274931
LLNEGQRLF	9	Unmodified	_LLNEGQRLF_					0	0	0		ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3165283203125	2	545.306198	1088.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.941	1	89.941	89.441	90.441	0								0	0	0	0.24522	1	23821	23821		7.9102	0.62092	1				23877	5766	13577	13578	30018	30018					0.057088342259021374
LLNFERAF	8	Unmodified	_LLNFERAF_					0	0	0			REV__nc|ENSG00000182208|Q70IA6|MOB2	REV__nc|ENSG00000182208|Q70IA6|MOB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.26397705078125	2	505.276909	1008.53927	0.28058	0.00014177	-0.38317	-0.00019361	-0.10259	-5.1836E-05	505.2767186459126	64.624	1.1149	64.624	64.316	65.431	0					67	40	2	0	0	0	0.3366	1	15996	15996		18.135	0	1	226860	+		23878	18183	13578	13579	30019	30019					0.03533777651421133
LLNFERAF	8	Unmodified	_LLNFERAF_					0	0	0			REV__nc|ENSG00000182208|Q70IA6|MOB2	REV__nc|ENSG00000182208|Q70IA6|MOB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.74688720703125	2	505.276909	1008.53927	0.23422	0.00011834	-1.2084	-0.0006106	-0.97422	-0.00049225	505.27687323495746	59.424	1.4843	59.424	58.413	59.897	0					122	51	3	0	0	0	0.29634	1	14225	14225		26.884	0	1	566400	+		23879	18183	13578	13579	30020	30020					0.03533777651421133
LLNFVETV	8	Unmodified	_LLNFVETV_					0	0	0		ENST00000514302.5_1_4:8609022-8621341:+|nuORF;nc|ENSG00000109625|Q66K79-3|CPZ;nc|ENSG00000109625|Q66K79-2|CPZ;ENSG00000109625|ENST00000360986|CPZ	ENST00000514302.5_1_4:8609022-8621341:+|nuORF	ENST00000514302.5_1_4:8609022-8621341:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.76654052734375	2	467.765843	933.517133	0.16681	7.8028E-05	-1.4622	-0.00068397	-1.2954	-0.00060595	467.76453486667117	62.851	0.78719	62.842	62.621	63.408	-0.0085526					48	28	2	0	0	0	0.37937	1	15520	15520		21.747	0	1	338820			23880	2262	13579	13580	30021	30021					0.047715531829908286
LLNIRFVYSL	10	Unmodified	_LLNIRFVYSL_					0	0	0		ENSG00000213759|ENST00000446444|UGT2B11	ENSG00000213759|ENST00000446444|UGT2B11	ENSG00000213759|ENST00000446444|UGT2B11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8701782226562	2	619.368798	1236.72304	0.37078	0.00022965	1.7351	0.0010747	2.1059	0.0013043	619.370569418945	91.757	1.4647	91.757	91.303	92.768	0.00046539					206	95	3	0	0	0	0.3641	1	24494	24494		10.074	0.6908	1	1022300			23881	8363	13580	13581	30022	30022					0.11415126362294359
LLNIVSVLF	9	Unmodified	_LLNIVSVLF_					0	0	0			REV__SLC6A16|p.E475Gfs*13|1|0.05|ENSG00000063127|chr19:49294021-49294022|-/ACTC|frameshift_variant	REV__SLC6A16|p.E475Gfs*13|1|0.05|ENSG00000063127|chr19:49294021-49294022|-/ACTC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7747497558594	2	509.320786	1016.62702	0.1755	8.9386E-05	1.6753	0.00085325	1.8508	0.00094264	509.3215733340719	66.569	0.38544	66.555	66.406	66.791	-0.013588					21	13	2	0	0	0	0.2322	1	16694	16694		20.454	0	1	123660	+		23882	13637	13581	13582	30023	30023					0.11936978522180652
LLNKIMIF	8	Unmodified	_LLNKIMIF_					0	0	0			REV__ENST00000557449.5_1_15:27113915-27159951:+|nuORF	REV__ENST00000557449.5_1_15:27113915-27159951:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.3039245605469	2	496.304081	990.59361	0.47767	0.00023707	-0.065784	-3.2649E-05	0.41189	0.00020442	496.3039220074158	72.104	1.8162	72.104	71.402	73.218	0					151	65	3	0	0	0	0.43727	1	18254	18254		10.183	0.83596	1	1130700	+		23883	18440	13582	13583	30024	30024					0.09793653478629949
LLNMALIDV	9	Unmodified	_LLNMALIDV_					0	0	0		TRAPPC8|p.T893Hfs*11|1|0.28|ENSG00000153339|chr18:31864695-31864695|T/-|frameshift_variant	TRAPPC8|p.T893Hfs*11|1|0.28|ENSG00000153339|chr18:31864695-31864695|T/-|frameshift_variant	TRAPPC8|p.T893Hfs*11|1|0.28|ENSG00000153339|chr18:31864695-31864695|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.82574462890625	2	501.288628	1000.5627	-0.047728	-2.3925E-05	3.4671	0.001738	3.4194	0.0017141	501.2900440202913	99.797	0.11088	99.797	99.733	99.844	0					19	14	2	0	0	0	0.25323	1	26677	26677		6.2058	1.3088	1	55126			23884	23400	13583	13584	30025	30025					0.062444553737236674
LLNQRHLHL	9	Unmodified	_LLNQRHLHL_					0	0	0			REV__ENST00000301770.10_1_11:61034988-61050313:-|nuORF	REV__ENST00000301770.10_1_11:61034988-61050313:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3025512695312	2	572.340907	1142.66726	-0.13754	-7.872E-05	-0.071808	-4.1099E-05	-0.20935	-0.00011982	572.3407465405421	13.509	0.29815	13.442	13.302	13.6	-0.067496					22	10	3	0	0	0	0.25622	1	467	467		7.2892	0	1	88352	+		23885	19827	13584	13585	30026	30026					0.10163337965332175
LLNRPAVL	8	Unmodified	_LLNRPAVL_					0	0	0			REV__ENST00000244061.5_1_20:48570270-48570396:+|nuORF	REV__ENST00000244061.5_1_20:48570270-48570396:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.28955078125	2	448.28982	894.565087	0.44346	0.0001988	0.04059	1.8196E-05	0.48405	0.00021699	448.28966828188146	45.701	0.464	45.766	45.544	46.008	0.065048					27	16	2	0	0	0	0.20019	1	10225	10225		42.968	4.8168	1	340680	+		23886	19497	13585	13586	30027	30027					0.1135867189370856
LLNRPAVL	8	Unmodified	_LLNRPAVL_					0	0	0			REV__ENST00000244061.5_1_20:48570270-48570396:+|nuORF	REV__ENST00000244061.5_1_20:48570270-48570396:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	448.28982	894.565087	0.60932	0.00027315	-0.17685	-7.9282E-05	0.43247	0.00019387	448.28963453133787	45.8	0.41555	45.8	45.614	46.029	0	0.0080902	-0.00015885	NaN	42.968	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275320	+		23887	19497	13585	13586							0.1135867189370856
LLNRPAVL	8	Unmodified	_LLNRPAVL_					0	0	0			REV__ENST00000244061.5_1_20:48570270-48570396:+|nuORF	REV__ENST00000244061.5_1_20:48570270-48570396:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	448.28982	894.565087	0.15604	6.9951E-05	0.13152	5.8957E-05	0.28756	0.00012891	448.2898853275628	45.75	0.47889	45.81	45.505	45.984	0.059834	0.01805	0.00011762	NaN	42.968	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367560	+		23888	19497	13585	13586							0.1135867189370856
LLNRPAVL	8	Unmodified	_LLNRPAVL_					0	0	0			REV__ENST00000244061.5_1_20:48570270-48570396:+|nuORF	REV__ENST00000244061.5_1_20:48570270-48570396:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	448.28982	894.565087	0.44346	0.0001988	0.04059	1.8196E-05	0.48405	0.00021699	448.28966828188146	45.701	0.464	45.766	45.544	46.008	0.065048	-0.026141	3.6102E-05	NaN	42.968	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340680	+		23889	19497	13585	13586							0.1135867189370856
LLNRRVQQHH	10	Unmodified	_LLNRRVQQHH_					0	0	0		ENST00000368455.8_1_6:122753105-122753183:+|nuORF	ENST00000368455.8_1_6:122753105-122753183:+|nuORF	ENST00000368455.8_1_6:122753105-122753183:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8822021484375	3	434.249688	1299.72723	-0.0081244	-3.528E-06	0.5891	0.00025582	0.58097	0.00025229	434.2494833772728	23.805	0.77244	23.766	23.506	24.278	-0.038927					60	26	3	0	0	0	0.3213	1	3512	3512		0.69767	0	1	132340			23890	9759	13586	13587	30028	30028					0.089360286285455
LLNRVPTLS	9	Unmodified	_LLNRVPTLS_					0	0	0			REV__ENST00000548804.5_1_12:58003340-58003568:+|nuORF	REV__ENST00000548804.5_1_12:58003340-58003568:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.811279296875	2	506.811116	1011.60768	0.74078	0.00037543	-0.91274	-0.00046259	-0.17197	-8.7155E-05	506.81057449757975	36.469	0.61802	36.555	36.3	36.918	0.08625					38	21	2	0	0	0	0.21389	1	7420	7420		19.257	0	1	394750	+		23891	22192	13587	13588	30029	30029					0.10234022231293238
LLNSLLTLP	9	Unmodified	_LLNSLLTLP_					0	0	0		ENST00000406875.7_1_7:139255655-139255937:-|nuORF	ENST00000406875.7_1_7:139255655-139255937:-|nuORF	ENST00000406875.7_1_7:139255655-139255937:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8262634277344	2	492.310418	982.606283	0.18235	8.9775E-05	0.33694	0.00016588	0.5193	0.00025566	492.31036971779287	62.072	0.57505	62.063	61.675	62.25	-0.0085526					25	20	2	0	0	0	0.18123	1	15211	15211		34.402	0	1	135640			23892	10226	13588	13589	30030	30030					0.11428388142508084
LLNSLSIID	9	Unmodified	_LLNSLSIID_					0	0	0			REV__ENST00000561203.1_1_15:49308706-49309212:-|nuORF	REV__ENST00000561203.1_1_15:49308706-49309212:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.73468017578125	2	494.289682	986.564812	0.5083	0.00025125	-1.1719	-0.00057924	-0.66356	-0.00032799	494.2888479794587	72.69	0.50907	72.69	72.48	72.989	0					32	18	2	0	0	0	0.18123	1	18580	18580		27.629	7.2143	1	108170	+		23893	22302	13589	13590	30031	30031					0.07099207383191697
LLNSVVYPL	9	Unmodified	_LLNSVVYPL_					0	0	0			REV__ENST00000511393.4_1_4:186321154-186321376:+|nuORF	REV__ENST00000511393.4_1_4:186321154-186321376:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7272033691406	2	509.302593	1016.59063	0.29451	0.00015	-0.29739	-0.00015146	-0.002871	-1.4622E-06	509.80374297194606	81.336	0.36975	81.336	81.108	81.478	0					23	16	2	0	0	0	0.25526	1	21125	21125		7.9102	0	1	79727	+		23894	21810	13590	13591	30032	30032					0.08300101625468415
LLNTFLERLF	10	Unmodified	_LLNTFLERLF_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3683471679688	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.42	1	119.42	118.92	119.92	0								0	0	0	0.38187	1	30812	30812		1.3295	0.25807	1				23895	276	13591	13592	30033	30033					0.0961882249964674
LLNVSVPVK	9	Unmodified	_LLNVSVPVK_					0	0	0			REV__ENSG00000171490|ENST00000571133|RSL1D1	REV__ENSG00000171490|ENST00000571133|RSL1D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.8026123046875	2	484.810585	967.606617	0.14396	6.9796E-05	1.8599	0.00090169	2.0039	0.00097149	484.81101857088754	33.142	0.22121	33.197	33.091	33.312	0.055309					13	7	2	0	0	0	0.23007	1	6424	6424		19.257	2.1441	1	127380	+		23896	17641	13592	13593	30034	30034					0.12151807862380792
LLNVSVPVK	9	Unmodified	_LLNVSVPVK_					0	0	0			REV__ENSG00000171490|ENST00000571133|RSL1D1	REV__ENSG00000171490|ENST00000571133|RSL1D1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	484.810585	967.606617	0.071033	3.4437E-05	2.0211	0.00097987	2.0922	0.0010143	484.81107081447874	33.234	0.27416	33.234	33.091	33.365	0	0.018553	6.5832E-05	NaN	19.257	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120460	+		23897	17641	13592	13593							0.12151807862380792
LLNVWINV	8	Unmodified	_LLNVWINV_					0	0	0		ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7999267578125	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.673	1	63.769	63.269	64.269	0.095722								0	0	0	0.35985	1	15776	15776		10.183	0.83596	1				23898	8760	13593	13594	30035	30035					0.07875252173846548
LLPAPLLL	8	Unmodified	_LLPAPLLL_					0	0	0		ENST00000307518.9_1_10:99332283-99332337:+|nuORF	ENST00000307518.9_1_10:99332283-99332337:+|nuORF	ENST00000307518.9_1_10:99332283-99332337:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.29400634765625	2	425.29404	848.573526	-0.23722	-0.00010089	0.19975	8.4954E-05	-0.037466	-1.5934E-05	425.29430710320406	96.592	2.0395	96.663	96.159	98.199	0.070457					592	217	4	0	0	0	0.28567	2	25732	25732;25955		32.454	0	1	13233000			23899	9279	13594	13595	30036;30037	30036					0.14318225810313834
LLPAVVRRLI	10	Unmodified	_LLPAVVRRLI_					0	0	0		ENST00000490674.1_1_2:113416436-113416796:+|nuORF	ENST00000490674.1_1_2:113416436-113416796:+|nuORF	ENST00000490674.1_1_2:113416436-113416796:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8432006835938	2	575.395151	1148.77575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.67	1	109.68	109.18	110.18	0.0099411								0	0	0	0.38126	1	28717	28717		1.6526	1.1943	1				23900	11162	13595	13596	30038	30038					0.20731129215732835
LLPCPGHTL	9	Unmodified	_LLPCPGHTL_					0	0	0		ENST00000397728.7_1_21:47609640-47609970:-|nuORF	ENST00000397728.7_1_21:47609640-47609970:-|nuORF	ENST00000397728.7_1_21:47609640-47609970:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.233642578125	2	475.760038	949.505523	0.34303	0.0001632	-1.2992	-0.0006181	-0.95615	-0.0004549	475.75935757911435	47.324	0.66571	47.376	47.142	47.808	0.052574					45	24	2	0	0	0	0.21137	1	10780	10780		18.135	5.6034	1	392480			23901	10145	13596	13597	30039	30039					0.02875032888016449
LLPCPGHTL	9	Unmodified	_LLPCPGHTL_					0	0	0		ENST00000397728.7_1_21:47609640-47609970:-|nuORF	ENST00000397728.7_1_21:47609640-47609970:-|nuORF	ENST00000397728.7_1_21:47609640-47609970:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	475.760038	949.505523	0.73501	0.00034969	-1.5623	-0.00074329	-0.8273	-0.0003936	475.7592710190262	47.305	0.66743	47.36	47.168	47.835	0.054371	-0.0042415	-0.00013886	NaN	12.532	40	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476960			23902	10145	13596	13597							0.02875032888016449
LLPEALEAQV	10	Unmodified	_LLPEALEAQV_					0	0	0		nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-3|CIZ1	nc|ENSG00000148337|Q9ULV3-3|CIZ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7385864257812	2	541.808239	1081.60193	0.52348	0.00028363	-0.66333	-0.0003594	-0.13985	-7.5772E-05	541.8080304672408	56.888	0.10238	56.967	56.909	57.011	0.078674					5	3	2	0	0	0	0.31267	1	13672	13672		10.074	0	1	45480			23903	4804	13597	13598	30040	30040					0.06438878928929626
LLPGKTYSF	9	Unmodified	_LLPGKTYSF_					0	0	0		nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2869873046875	2	513.286943	1024.55933	0.44227	0.00022701	0.13741	7.0529E-05	0.57968	0.00029754	513.2867965879801	48.671	1.6545	48.671	48.268	49.923	0					149	59	4	0	0	0	0.10059	2	11150	11150;11190		38.176	12.776	1	5887500			23904	1769	13598	13599	30041;30042	30041					0.04803528591378381
LLPGKTYSF	9	Unmodified	_LLPGKTYSF_					0	0	0		nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2870483398438	2	513.286943	1024.55933	0.45951	0.00023586	0.20348	0.00010445	0.66299	0.00034031	513.2868287543946	48.662	1.6449	48.707	48.312	49.957	0.044891					159	60	4	0	0	0	0.07944	3	11193	11151;11193;11246		41.956	12.874	1	5753000			23905	1769	13598	13599	30043;30044;30045	30044					0.04803528591378381
LLPGKTYSF	9	Unmodified	_LLPGKTYSF_					0	0	0		nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2870483398438	2	513.286943	1024.55933	0.26809	0.00013761	0.2538	0.00013027	0.52189	0.00026788	513.286829043379	48.619	1.3428	48.651	48.232	49.574	0.032043					146	48	4	0	0	0	0.12642	2	11165	11119;11165		34.402	3.7652	1	5708000			23906	1769	13598	13599	30046;30047	30047					0.04803528591378381
LLPGLALALA	10	Unmodified	_LLPGLALALA_					0	0	0			REV__ENST00000552652.2_1_12:56333995-56334415:+|nuORF	REV__ENST00000552652.2_1_12:56333995-56334415:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.3154296875	2	476.315503	950.616454	-0.063937	-3.0454E-05	-0.017779	-8.4684E-06	-0.081716	-3.8923E-05	476.315496733946	59.641	0.72219	59.736	59.354	60.077	0.095089					40	25	2	0	0	0	0.31876	1	14532	14532		18.135	0	1	371980	+		23907	22211	13599	13600	30048	30048					0.13916995867725745
LLPGPSRLL	9	Unmodified	_LLPGPSRLL_					0	0	0			REV__ENST00000370384.7_1_6:74019690-74019876:-|nuORF	REV__ENST00000370384.7_1_6:74019690-74019876:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.80279541015625	2	483.310752	964.606951	0.058521	2.8284E-05	0.15745	7.6097E-05	0.21597	0.00010438	483.3107269241064	65.409	0.4505	65.409	65.157	65.608	0					21	15	2	0	0	0	0.23784	1	16267	16267		5.7319	0	1	136770	+		23908	20377	13600	13601	30049	30049					0.12323227582214713
LLPGSPSLLL	10	Unmodified	_LLPGSPSLLL_					0	0	0		ENST00000585457.5_1_17:42254041-42254848:-|nuORF;nc|ENSG00000267080|Q495Z4|ASB16-AS1	ENST00000585457.5_1_17:42254041-42254848:-|nuORF	ENST00000585457.5_1_17:42254041-42254848:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2714538574219	2	505.318243	1008.62193	0.55632	0.00028112	-0.69139	-0.00034937	-0.13507	-6.8255E-05	505.31772823062505	79.219	0.41367	79.19	78.935	79.348	-0.028931					40	17	3	0	0	0	0.31267	1	20511	20511		14.838	0.93222	1	307340			23909	12105	13601	13602	30050	30050					0.11796674659569817
LLPHAGLL	8	Unmodified	_LLPHAGLL_					0	0	0			REV__ENSG00000261221|ENST00000568956|ZNF865	REV__ENSG00000261221|ENST00000568956|ZNF865	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.2657775878906	2	417.265813	832.517074	0.25175	0.00010505	0.010833	4.5204E-06	0.26258	0.00010957	417.26565487534447	45.554	0.68338	45.554	45.291	45.974	0					62	24	4	0	0	0	0.20676	1	10206	10206		41.817	0	1	2103900	+		23910	19282	13602	13603	30051	30051					0.09411597973667085
LLPHLLPLL	9	Unmodified	_LLPHLLPLL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8472290039062	2	514.846971	1027.67939	0.2993	0.00015409	0.34854	0.00017945	0.64784	0.00033354	514.846854017906	81.522	0.69228	81.522	81.302	81.995	0					61	29	3	0	0	0	0.0096669	3	21259	21209;21259;21311		79.935	0	1	291160			23911	1995	13603	13604	30052;30053;30054	30053					0.16665561655804595
LLPHLLPLL	9	Unmodified	_LLPHLLPLL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.8470458984375	2	514.846971	1027.67939	-0.042575	-2.1919E-05	0.80295	0.0004134	0.76038	0.00039148	514.847051760294	81.464	0.69901	81.533	81.293	81.992	0.068993					70	32	3	0	0	0	0.0096669	3	21233	21191;21233;21281		79.935	0	1	425690			23912	1995	13603	13604	30055;30056;30057	30056					0.16665561655804595
LLPHLLPLL	9	Unmodified	_LLPHLLPLL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.8472290039062	2	514.846971	1027.67939	0.21019	0.00010822	0.425	0.00021881	0.6352	0.00032703	514.8469598211109	81.605	0.60983	81.581	81.374	81.984	-0.02404					55	26	3	0	0	0	0.069231	2	21235	21235;21289		45.75	0	1	299120			23913	1995	13603	13604	30058;30059	30058					0.16665561655804595
LLPHPSFYF	9	Unmodified	_LLPHPSFYF_					0	0	0		ENST00000528737.5_1_11:58910257-58910350:+|nuORF	ENST00000528737.5_1_11:58910257-58910350:+|nuORF	ENST00000528737.5_1_11:58910257-58910350:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8057861328125	2	560.794935	1119.57532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.311	1	51.357	50.857	51.857	0.046574								0	0	0	0.16935	1	11963	11963		30.225	1.738	1				23914	11588	13604	13605	30060	30060					0.0203123482826868
LLPHQGQRHL	10	Unmodified	_LLPHQGQRHL_					0	0	0			REV__ENST00000417901.5_1_3:49155182-49156664:-|nuORF	REV__ENST00000417901.5_1_3:49155182-49156664:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.2927856445312	2	599.843813	1197.67307	0.22093	0.00013252	-0.94423	-0.00056639	-0.7233	-0.00043387	599.8431822871281	39.829	0.43007	39.829	39.62	40.05	0					24	15	2	0	0	0	0.32009	1	8459	8459		3.9444	0.3479	1	180720	+		23915	19855	13605	13606	30061	30061					0.0821443647698743
LLPHQGQRHL	10	Unmodified	_LLPHQGQRHL_					0	0	0			REV__ENST00000417901.5_1_3:49155182-49156664:-|nuORF	REV__ENST00000417901.5_1_3:49155182-49156664:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	599.843813	1197.67307	0.35954	0.00021567	-0.90263	-0.00054143	-0.54308	-0.00032576	599.843348042386	39.674	0.35625	39.773	39.593	39.949	0.099407	-0.027832	2.6155E-05	NaN	3.9444	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239020	+		23916	19855	13605	13606							0.0821443647698743
LLPKELRR	8	Unmodified	_LLPKELRR_					0	0	0		ENSG00000250803|ENST00000509403|unknown	ENSG00000250803|ENST00000509403|unknown	ENSG00000250803|ENST00000509403|unknown	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2866821289062	2	512.834926	1023.6553	0.42137	0.00021609	-0.6797	-0.00034858	-0.25834	-0.00013248	512.8349006680296	48.801	0.408	48.801	48.504	48.912	0					20	14	2	0	0	0	0.31934	1	11104	11104		24.674	0	1	356770			23917	8597	13606	13607	30062	30062					0.14441721222135584
LLPKKYHVL	9	Unmodified	_LLPKKYHVL_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2706909179688	2	555.855327	1109.6961	0.18485	0.00010275	0.23571	0.00013102	0.42056	0.00023377	555.8554502635203	33.017	0.43872	33.071	32.877	33.316	0.054375					27	15	2	0	0	0	0.25526	1	6374	6374		7.9102	0.62092	1	161900			23918	295	13607	13608	30063	30063					0.14564062541739986
LLPKSSALF	9	Unmodified	_LLPKSSALF_					0	0	0		nc|ENSG00000133116|Q9UEF7-2|KL;ENSG00000133116|ENST00000380099|KL	nc|ENSG00000133116|Q9UEF7-2|KL	nc|ENSG00000133116|Q9UEF7-2|KL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7630920410156	2	488.29731	974.580068	0.34084	0.00016643	-0.35813	-0.00017487	-0.017286	-8.4406E-06	488.2971251187712	63.232	0.29985	63.224	63.051	63.351	-0.0085526					15	10	2	0	0	0	0.23783	1	15620	15620		18.135	18.135	1	150490			23919	12701	13608	13609	30064	30064					0.09176118971049618
LLPLLHPLL	9	Unmodified	_LLPLLHPLL_					0	0	0			REV__nc|ENSG00000105576|O14787-2|TNPO2	REV__nc|ENSG00000105576|O14787-2|TNPO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2556762695312	2	514.846971	1027.67939	0.44422	0.0002287	-0.19472	-0.00010025	0.24949	0.00012845	514.8466773047404	82.524	0.34068	82.524	82.338	82.679	0					14	12	2	0	0	0	0.25291	1	21543	21543		9.3474	0	1	93515	+		23920	14466	13609	13610	30065	30065					0.16665561655781858
LLPLPAVL	8	Unmodified	_LLPLPAVL_					0	0	0		ENST00000428443.7_1_2:179967411-179967483:-|nuORF	ENST00000428443.7_1_2:179967411-179967483:-|nuORF	ENST00000428443.7_1_2:179967411-179967483:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.2862854003906	2	418.286214	834.557876	0.14088	5.8928E-05	0.23421	9.7968E-05	0.37509	0.0001569	418.28620910663386	86.768	1.6253	86.768	86.125	87.75	0					152	68	4	0	0	0	0.052153	2	22812	22812;22911		77.196	0	1	2646100			23921	10442	13610	13611	30066;30067	30066					0.13397939293281524
LLPLPAVL	8	Unmodified	_LLPLPAVL_					0	0	0		ENST00000428443.7_1_2:179967411-179967483:-|nuORF	ENST00000428443.7_1_2:179967411-179967483:-|nuORF	ENST00000428443.7_1_2:179967411-179967483:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.2863464355469	2	418.286214	834.557876	0.20743	8.6767E-05	0.13358	5.5873E-05	0.34101	0.00014264	418.2861650477147	86.615	1.4144	86.699	86.135	87.55	0.084251					138	59	4	0	0	0	0.052153	3	22757	22757;22801;22843		77.196	0	1	2673300			23922	10442	13610	13611	30068;30069;30070	30068					0.13397939293281524
LLPLPAVL	8	Unmodified	_LLPLPAVL_					0	0	0		ENST00000428443.7_1_2:179967411-179967483:-|nuORF	ENST00000428443.7_1_2:179967411-179967483:-|nuORF	ENST00000428443.7_1_2:179967411-179967483:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2861633300781	2	418.286214	834.557876	0.28282	0.0001183	0.069107	2.8907E-05	0.35192	0.0001472	418.28614753028756	86.751	1.7818	86.746	86.083	87.865	-0.0056229					158	79	4	0	0	0	0.052153	3	22793	22793;22835;22877		77.196	0	1	2384000			23923	10442	13610	13611	30071;30072;30073	30071					0.13397939293281524
LLPNHSYVF	9	Unmodified	_LLPNHSYVF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2901000976562	2	545.290017	1088.56548	0.54061	0.00029479	0.35974	0.00019616	0.90035	0.00049095	545.2902081117902	52.821	0.91806	52.821	52.55	53.468	0					72	33	3	0	0	0	0.057976	1	12430	12430		49.933	15.831	1	1678200			23924	3638	13611	13612	30074	30074					0.024740468228856116
LLPNHSYVF	9	Unmodified	_LLPNHSYVF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2739868164062	2	545.290017	1088.56548	0.83108	0.00045318	0.12982	7.0792E-05	0.9609	0.00052397	545.2900221639876	52.819	0.87298	52.869	52.553	53.426	0.050575					67	31	3	0	0	0	0.063853	2	12390	12390;12401		47.749	19.262	1	1699800			23925	3638	13611	13612	30075;30076	30075					0.024740468228856116
LLPNHSYVF	9	Unmodified	_LLPNHSYVF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2902221679688	2	545.290017	1088.56548	0.62561	0.00034114	0.36147	0.00019711	0.98708	0.00053825	545.290249983517	52.97	1.0344	52.961	52.654	53.688	-0.0096054					79	38	3	0	0	0	0.041175	2	12433	12433;12443		56.177	21.99	1	1546600			23926	3638	13611	13612	30077;30078	30077					0.024740468228856116
LLPPFSFLSI	10	Unmodified	_LLPPFSFLSI_					0	0	0			REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1	REV__nc|ENSG00000258436|Q7Z5J4-2|RAI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2799682617188	2	567.333893	1132.65323	0.26792	0.000152	-1.5908	-0.00090251	-1.3229	-0.00075051	567.3321055053842	67.732	0.13564	67.732	67.673	67.809	0					6	4	2	0	0	0	0.28434	1	17031	17031		19.257	0	1	66307	+		23927	23222	13612	13613	30079	30079					0.0922124769367656
LLPPPNCR	8	Unmodified	_LLPPPNCR_					0	0	0		ENST00000421655.1_1_9:108522415-108523033:+|nuORF	ENST00000421655.1_1_9:108522415-108523033:+|nuORF	ENST00000421655.1_1_9:108522415-108523033:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.27740478515625	2	455.25238	908.490207	0.57206	0.00026043	-4.0388	-0.0018387	-3.4668	-0.0015783	455.2484587171179	78.033	0.85817	78.033	77.58	78.438	0					73	31	3	0	0	0	0.34147	1	20055	20055		6.3541	0	1	344610			23928	10375	13613	13614	30080	30080					0.03230166090816056
LLPPSTSAF	9	Unmodified	_LLPPSTSAF_					0	0	0		ENST00000217381.2_1_20:31995804-31996281:-|nuORF	ENST00000217381.2_1_20:31995804-31996281:-|nuORF	ENST00000217381.2_1_20:31995804-31996281:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2570495605469	2	466.758018	931.501483	0.10857	5.0674E-05	-0.11168	-5.2128E-05	-0.003115	-1.4539E-06	466.7583510814651	79.414	3.9147	79.414	78.195	82.11	0					344	160	5	0	0	0	0.30166	1	20294	20294		8.5933	0	1	24549000			23929	8826	13614	13615	30081	30081					0.032992666659424685
LLPRIALI	8	Unmodified	_LLPRIALI_					0	0	0		ENST00000263851.8_2_8:79717557-79717626:-|nuORF	ENST00000263851.8_2_8:79717557-79717626:-|nuORF	ENST00000263851.8_2_8:79717557-79717626:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.27752685546875	2	454.818213	907.621873	0.57526	0.00026164	-0.36689	-0.00016687	0.20837	9.4772E-05	454.8180479828581	77.919	0.61668	77.919	77.604	78.221	0					31	22	2	0	0	0	0.31934	1	20103	20103		18.135	0	1	148010			23930	9015	13615	13616	30082	30082					0.16436719450211967
LLPRLGRVVPL	11	Unmodified	_LLPRLGRVVPL_					0	0	0		ENST00000488857.5_2_17:8065068-8065676:-|nuORF	ENST00000488857.5_2_17:8065068-8065676:-|nuORF	ENST00000488857.5_2_17:8065068-8065676:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.1994934082031	3	411.611564	1231.81286	0.19307	7.9469E-05	-0.4881	-0.00020091	-0.29504	-0.00012144	411.61135728949677	59.012	0.61542	59.103	58.902	59.517	0.091305					37	21	3	0	0	0	0.33238	1	14398	14398		0.45452	0	1	269780			23931	11138	13616	13617	30083	30083					0.20622800761498183
LLPRLPFR	8	Unmodified	_LLPRLPFR_					0	0	0		nc|ENSG00000263155|P0CAP1-11|MYZAP	nc|ENSG00000263155|P0CAP1-11|MYZAP	nc|ENSG00000263155|P0CAP1-11|MYZAP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.3155517578125	2	506.326737	1010.63892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.16	1	89.25	88.75	89.75	0.090569								0	0	0	0.35985	1	23575	23575		10.183	0	1				23932	12988	13617	13618	30084	30084					0.13402640056028758
LLPSLAPQK	9	Unmodified	_LLPSLAPQK_					0	0	0		ENST00000377797.7_1_5:149779402-149779603:+|nuORF	ENST00000377797.7_1_5:149779402-149779603:+|nuORF	ENST00000377797.7_1_5:149779402-149779603:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.30322265625	2	483.80276	965.590967	0.13748	6.6511E-05	-1.4673	-0.00070989	-1.3298	-0.00064338	483.8028147785775	64.865	1.0782	64.957	64.553	65.631	0.091934					119	39	4	0	0	0	0.22188	1	16164	16164		20.454	0	1	2200100			23933	9944	13618	13619	30085	30085					0.10679521345332432
LLPSPTLLL	9	Unmodified	_LLPSPTLLL_					0	0	0			REV__ENST00000549529.1_1_12:96649292-96660955:+|nuORF	REV__ENST00000549529.1_1_12:96649292-96660955:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.8267517089844	2	483.815336	965.616119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.741	1	39.84	39.34	40.34	0.099407								0	0	0	0.24077	1	8404	8404		9.3474	0	1		+		23934	14705	13619	13620	30086	30086					0.13193576147898511
LLPSRQFGF	9	Unmodified	_LLPSRQFGF_					0	0	0		ENSG00000134419|ENST00000322989|RPS15A;ENST00000569365.6_1_16:18794333-18800349:-|nuORF	ENSG00000134419|ENST00000322989|RPS15A	ENSG00000134419|ENST00000322989|RPS15A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.79833984375	2	532.798009	1063.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.402	1	56.402	55.902	56.902	0								0	0	0	0.10252	1	13538	13538		45.74	13.623	1				23935	3783	13620	13621	30087	30087					0.05221753059799994
LLPSRQFGF	9	Unmodified	_LLPSRQFGF_					0	0	0		ENSG00000134419|ENST00000322989|RPS15A;ENST00000569365.6_1_16:18794333-18800349:-|nuORF	ENSG00000134419|ENST00000322989|RPS15A	ENSG00000134419|ENST00000322989|RPS15A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7980346679688	2	532.798009	1063.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.55	1	56.55	56.05	57.05	0								0	0	0	0.047655	1	13585	13585		61.602	25.558	1				23936	3783	13620	13621	30088	30088					0.05221753059799994
LLPSRQFGF	9	Unmodified	_LLPSRQFGF_					0	0	0		ENSG00000134419|ENST00000322989|RPS15A;ENST00000569365.6_1_16:18794333-18800349:-|nuORF	ENSG00000134419|ENST00000322989|RPS15A	ENSG00000134419|ENST00000322989|RPS15A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7992553710938	2	532.798009	1063.58147	1.1603	0.00061823	0.040909	2.1796E-05	1.2013	0.00064003	532.797902137174	56.605	0.51176	56.586	56.326	56.838	-0.019077					43	18	3	0	0	0	0.048637	1	13657	13657		53.404	25.775	1	2531700			23937	3783	13620	13621	30089	30089					0.05221753059799994
LLPVAQTQQLS	11	Unmodified	_LLPVAQTQQLS_					0	0	0			REV__nc|ENSG00000104044|Q04671-2|OCA2	REV__nc|ENSG00000104044|Q04671-2|OCA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.3295288085938	2	599.34552	1196.67649	0.24966	0.00014963	-0.28875	-0.00017306	-0.039091	-2.3429E-05	599.3453670147113	57.291	0.68411	57.274	56.975	57.659	-0.017197					56	24	3	0	0	0	0.42762	1	13870	13870		7.609	0.97858	1	1442400	+		23938	22921	13621	13622	30090	30090					0.0860164174032434
LLPVLVHTF	9	Unmodified	_LLPVLVHTF_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.8209838867188	2	519.820953	1037.62735	0.36526	0.00018987	-0.053953	-2.8046E-05	0.3113	0.00016182	519.8208416773804	69.1	0.77652	69.1	68.841	69.618	0					77	27	4	0	0	0	0.010938	2	17425	17425;17474		77.984	0	1	668530			23939	6698	13622	13623	30091;30092	30091					0.11004398242016578
LLPVLVHTF	9	Unmodified	_LLPVLVHTF_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.8209838867188	2	519.820953	1037.62735	0.42878	0.00022289	-0.1704	-8.8577E-05	0.25838	0.00013431	519.8208033806637	69.03	0.89261	69.102	68.854	69.747	0.071938					73	31	4	0	0	0	0.013258	2	17453	17403;17453		74.423	0	1	703940			23940	6698	13622	13623	30093;30094	30094					0.11004398242016578
LLPVLVHTF	9	Unmodified	_LLPVLVHTF_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENSG00000173171|ENST00000368376|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.8213500976562	2	519.820953	1037.62735	0.30074	0.00015633	0.10644	5.533E-05	0.40718	0.00021166	519.8209295189762	69.096	0.72382	69.077	68.843	69.567	-0.019157					67	25	4	0	0	0	0.0061338	2	17426	17426;17479		85.357	0	1	713990			23941	6698	13622	13623	30095;30096	30095					0.11004398242016578
LLPVPKRGSL	10	Unmodified	_LLPVPKRGSL_					0	0	0			REV__ENST00000482621.5_1_1:1328164-1330914:-|nuORF	REV__ENST00000482621.5_1_1:1328164-1330914:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.35009765625	2	540.350409	1078.68626	0.37938	0.000205	-0.31472	-0.00017006	0.064653	3.4935E-05	540.3502092001221	60.029	0.55856	60.018	59.739	60.298	-0.011486					37	19	3	0	0	0	0.3641	1	14686	14686		10.074	0.6908	1	1149000	+		23942	21505	13623	13624	30097	30097					0.15006874536379655
LLPVQVPTV	9	Unmodified	_LLPVQVPTV_					0	0	0			REV__ENST00000307403.6_1_7:155500050-155531112:+|nuORF	REV__ENST00000307403.6_1_7:155500050-155531112:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7260437011719	2	483.305136	964.595718	0.19552	9.4495E-05	-0.16589	-8.0178E-05	0.029624	1.4318E-05	483.30507069629607	75.379	0.49005	75.379	75.128	75.618	0					26	17	2	0	0	0	0.24471	1	19361	19361		17.113	2.2746	1	105610	+		23943	18336	13624	13625	30098	30098					0.11200405488079923
LLPVQVPTV	9	Unmodified	_LLPVQVPTV_					0	0	0			REV__ENST00000307403.6_1_7:155500050-155531112:+|nuORF	REV__ENST00000307403.6_1_7:155500050-155531112:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.72625732421875	2	483.305136	964.595718	0.28853	0.00013945	-0.13238	-6.3978E-05	0.15616	7.5471E-05	483.3049623651458	75.249	0.54376	75.302	75.102	75.646	0.052361					26	19	2	0	0	0	0.24993	1	19294	19294		13.042	1.4022	1	79987	+		23944	18336	13624	13625	30099	30099					0.11200405488079923
LLPVTPDF	8	Unmodified	_LLPVTPDF_					0	0	0		nc|ENSG00000112053|Q96RN1-4|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8;ENST00000486155.1_1_6:35928714-35992326:-|nuORF;nc|ENSG00000112053|Q96RN1-2|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7705383300781	2	451.255111	900.49567	0.19622	8.8546E-05	1.0653	0.00048071	1.2615	0.00056926	451.2548073913294	74.921	1.3163	74.973	74.703	76.019	0.052361					75	48	2	0	0	0	0.34147	1	19482	19482		6.3541	0	1	254090			23945	2407	13625	13626	30100	30100					0.041441681542892184
LLPWPMAFRLL	11	Unmodified	_LLPWPMAFRLL_					0	0	0		ENST00000511828.1_1_4:100575555-100575762:-|nuORF	ENST00000511828.1_1_4:100575555-100575762:-|nuORF	ENST00000511828.1_1_4:100575555-100575762:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.9330139160156	3	452.933538	1355.77878	0.37863	0.00017149	-0.91599	-0.00041488	-0.53736	-0.00024339	452.9331347635272	33.666	0.76788	33.666	33.336	34.104	0					72	27	4	0	0	0	0.28246	1	6551	6551		23.801	2.9299	1	582610			23946	11388	13626	13627	30101	30101					0.1151263627825756
LLPWPMAFRLL	11	Unmodified	_LLPWPMAFRLL_					0	0	0		ENST00000511828.1_1_4:100575555-100575762:-|nuORF	ENST00000511828.1_1_4:100575555-100575762:-|nuORF	ENST00000511828.1_1_4:100575555-100575762:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.93328857421875	3	452.933538	1355.77878	0.472	0.00021378	-1.0015	-0.00045363	-0.52954	-0.00023985	452.9330560933225	33.484	0.55156	33.55	33.323	33.875	0.06636					53	19	3	0	0	0	0.37728	1	6491	6491		14.218	1.3622	1	675800			23947	11388	13626	13627	30102	30102					0.1151263627825756
LLPWPMAFRLL	11	Unmodified	_LLPWPMAFRLL_					0	0	0		ENST00000511828.1_1_4:100575555-100575762:-|nuORF	ENST00000511828.1_1_4:100575555-100575762:-|nuORF	ENST00000511828.1_1_4:100575555-100575762:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.9329833984375	3	452.933538	1355.77878	0.0096577	4.3743E-06	-0.46815	-0.00021204	-0.45849	-0.00020767	452.9332715044857	33.474	0.74995	33.541	33.271	34.021	0.0667					65	26	3	0	0	0	0.3826	1	6473	6473		13.519	2.9912	1	596300			23948	11388	13626	13627	30103	30103					0.1151263627825756
LLPWPMAFRLL	11	Unmodified	_LLPWPMAFRLL_					0	0	0		ENST00000511828.1_1_4:100575555-100575762:-|nuORF	ENST00000511828.1_1_4:100575555-100575762:-|nuORF	ENST00000511828.1_1_4:100575555-100575762:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	452.933538	1355.77878	0.472	0.00021378	-1.0015	-0.00045363	-0.52954	-0.00023985	452.9330560933225	33.484	0.55156	33.55	33.323	33.875	0.06636	-0.035297	-0.00034619	NaN	23.801	53	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	675800			23949	11388	13626	13627							0.1151263627825756
LLPYISLR	8	Unmodified	_LLPYISLR_					0	0	0		ENST00000453654.6_3_7:137073903-137074059:-|nuORF	ENST00000453654.6_3_7:137073903-137074059:-|nuORF	ENST00000453654.6_3_7:137073903-137074059:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.8058166503906	2	487.805303	973.596052	0.29328	0.00014306	0.11958	5.8332E-05	0.41286	0.0002014	487.8053799852287	62.233	1.9365	62.233	61.537	63.474	0					212	71	5	0	0	0	0.023679	1	15456	15456		97.075	0	1	10023000			23950	10673	13627	13628	30104	30104					0.10819825207943268
LLPYKLPQQI	10	Unmodified	_LLPYKLPQQI_					0	0	0			REV__ENST00000461745.5_2_3:77089697-77089820:+|nuORF	REV__ENST00000461745.5_2_3:77089697-77089820:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.872314453125	2	606.871174	1211.72779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.89	1	116.91	116.41	117.41	0.020988								0	0	0	0.38166	1	30317	30317		1.4819	0.95714	1		+		23951	21223	13628	13629	30105	30105					0.13040010505051214
LLPYQFRME	9	Unmodified	_LLPYQFRME_					0	0	0		ENST00000415758.1_1_7:44608571-44609680:-|nuORF;ENST00000421223.5_1_7:44605603-44609680:-|nuORF;ENST00000446987.5_1_7:44605603-44612175:-|nuORF;nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56	ENST00000415758.1_1_7:44608571-44609680:-|nuORF	ENST00000415758.1_1_7:44608571-44609680:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.343505859375	2	598.810259	1195.60597	0.51563	0.00030877	3.6138	0.002164	4.1295	0.0024728	598.812265223665	45.081	0.10786	45.157	45.101	45.209	0.07505					5	3	2	0	0	0	0.25417	1	10039	10039		8.5933	0.68312	1	126540			23952	3965	13629	13630	30106	30106					0.015986451510343613
LLQATLHRYE	10	Unmodified	_LLQATLHRYE_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;DCTN1|p.G1216Efs*33|1|0.17|ENSG00000204843|chr2:74362104-74362104|C/-|frameshift_variant;ENST00000466110.5_1_2:74593906-74595252:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.343505859375	2	622.343312	1242.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.623	1	98.674	98.174	99.174	0.050888								0	0	0	0.37157	1	26400	26400		5.7319	0.83484	1				23953	8258	13630	13631	30107	30107					0.06044177317426147
LLQCRRSHSAR	11	Unmodified	_LLQCRRSHSAR_					0	0	0			REV__ENST00000415279.1_1_1:106434930-106435587:+|nuORF	REV__ENST00000415279.1_1_1:106434930-106435587:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.5179748535156	3	442.910567	1325.70987	0.21125	9.3565E-05	1.9535	0.00086523	2.1648	0.0009588	442.91143061528373	46.456	0.45799	46.509	46.252	46.71	0.052574					32	16	3	0	0	0	0.33122	1	10425	10425		2.4348	0	1	366630	+		23954	20808	13631	13632	30108	30108					0.06004365031230918
LLQDSSCSS	9	Unmodified	_LLQDSSCSS_					0	0	0		ENST00000524614.1_1_11:124545226-124566136:+|nuORF	ENST00000524614.1_1_11:124545226-124566136:+|nuORF	ENST00000524614.1_1_11:124545226-124566136:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7527160644531	2	470.208032	938.401511	0.38512	0.00018109	1.9522	0.00091793	2.3373	0.001099	470.20890227121464	47.664	0.26182	47.712	47.51	47.772	0.047523					12	9	2	0	0	0	0.25938	1	10795	10795		1.8442	0	1	228770			23955	11522	13632	13633	30109	30109					-0.07015338730161602
LLQEQLVT	8	Unmodified	_LLQEQLVT_					0	0	0		CDAN1|p.S1036Ffs*15|1|0.1|ENSG00000140326|chr15:42726407-42726408|-/AGAGCACGTCCTGTAA|frameshift_variant;nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1	CDAN1|p.S1036Ffs*15|1|0.1|ENSG00000140326|chr15:42726407-42726408|-/AGAGCACGTCCTGTAA|frameshift_variant	CDAN1|p.S1036Ffs*15|1|0.1|ENSG00000140326|chr15:42726407-42726408|-/AGAGCACGTCCTGTAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2555847167969	2	472.276575	942.538597	0.16271	7.6842E-05	-1.1384	-0.00053765	-0.97571	-0.00046081	472.2760739776102	62.581	0.69626	62.581	62.396	63.093	0					30	25	2	0	0	0	0.34218	1	15448	15448		9.3474	0	1	102420			23956	100	13633	13634	30110	30110					0.06502938211713172
LLQERSLK	8	Unmodified	_LLQERSLK_					0	0	0		ENST00000504592.5_2_4:102994878-102995350:+|nuORF	ENST00000504592.5_2_4:102994878-102995350:+|nuORF	ENST00000504592.5_2_4:102994878-102995350:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.28656005859375	2	493.803291	985.59203	0.2776	0.00013708	-0.3479	-0.0001718	-0.070302	-3.4715E-05	493.80316461907756	22.391	0.59826	22.291	22.074	22.672	-0.10034					47	21	3	0	0	0	0.3433	1	3077	3077		6.2058	0	1	164930			23957	11301	13634	13635	30111	30111					0.09865735714242874
LLQGLEAQF	9	Unmodified	_LLQGLEAQF_					0	0	0		ENSG00000178685|ENST00000313028|PARP10;ENST00000526007.5_1_8:145058131-145058521:-|nuORF	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7816162109375	2	509.782025	1017.5495	0.34004	0.00017334	-0.56065	-0.00028581	-0.22061	-0.00011246	509.7817372786313	82.275	0.57992	82.253	81.96	82.54	-0.022087					41	22	2	0	0	0	0.30623	1	21472	21472		7.9102	0.62092	1	492000			23958	7068	13635	13636	30112	30112					0.04142340585997317
LLQGRELLI	9	Unmodified	_LLQGRELLI_					0	0	0		ENST00000372004.7_1_20:46254139-46254205:+|nuORF	ENST00000372004.7_1_20:46254139-46254205:+|nuORF	ENST00000372004.7_1_20:46254139-46254205:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.8346557617188	2	527.834591	1053.65463	0.99702	0.00052626	-0.3209	-0.00016938	0.67612	0.00035688	527.8343224907507	56.25	0.82778	56.25	56.021	56.849	0					56	30	3	0	0	0	0.14076	1	13481	13481		32.305	7.3145	1	1428000			23959	9831	13636	13637	30113	30113					0.12994881782424272
LLQGRELLI	9	Unmodified	_LLQGRELLI_					0	0	0		ENST00000372004.7_1_20:46254139-46254205:+|nuORF	ENST00000372004.7_1_20:46254139-46254205:+|nuORF	ENST00000372004.7_1_20:46254139-46254205:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.8348388671875	2	527.834591	1053.65463	0.96393	0.0005088	-0.35698	-0.00018843	0.60695	0.00032037	527.8343543296628	56.222	0.64876	56.301	56.055	56.704	0.078674					50	23	3	0	0	0	0.14076	1	13462	13462		32.305	3.811	1	1405400			23960	9831	13636	13637	30114	30114					0.12994881782424272
LLQGRELLI	9	Unmodified	_LLQGRELLI_					0	0	0		ENST00000372004.7_1_20:46254139-46254205:+|nuORF	ENST00000372004.7_1_20:46254139-46254205:+|nuORF	ENST00000372004.7_1_20:46254139-46254205:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	527.834591	1053.65463	0.99702	0.00052626	-0.3209	-0.00016938	0.67612	0.00035688	527.8343224907507	56.25	0.82778	56.25	56.021	56.849	0	-0.014783	7.0003E-05	NaN	32.305	56	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1428000			23961	9831	13636	13637							0.12994881782424272
LLQGRELLI	9	Unmodified	_LLQGRELLI_					0	0	0		ENST00000372004.7_1_20:46254139-46254205:+|nuORF	ENST00000372004.7_1_20:46254139-46254205:+|nuORF	ENST00000372004.7_1_20:46254139-46254205:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	527.834591	1053.65463	0.96393	0.0005088	-0.35698	-0.00018843	0.60695	0.00032037	527.8343543296628	56.222	0.64876	56.301	56.055	56.704	0.078674	0.035862	3.1905E-05	NaN	32.305	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1405400			23962	9831	13636	13637							0.12994881782424272
LLQGRELLI	9	Unmodified	_LLQGRELLI_					0	0	0		ENST00000372004.7_1_20:46254139-46254205:+|nuORF	ENST00000372004.7_1_20:46254139-46254205:+|nuORF	ENST00000372004.7_1_20:46254139-46254205:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	527.834591	1053.65463	1.123	0.00059274	-0.65627	-0.0003464	0.46671	0.00024634	527.8341306597348	56.263	0.57154	56.244	56.021	56.592	-0.019077	-0.021079	-0.00028404	NaN	32.305	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2044400			23963	9831	13636	13637							0.12994881782424272
LLQHALVL	8	Unmodified	_LLQHALVL_					0	0	0			REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF	REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7921447753906	2	453.792195	905.569838	0.222	0.00010074	-0.17499	-7.9408E-05	0.047014	2.1335E-05	453.79206717019986	62.484	1.1776	62.484	62.187	63.364	0					86	43	3	0	0	0	0.42446	1	15473	15473		14.582	0	1	708050	+		23964	17790	13637	13638	30115	30115					0.1132755603645137
LLQIKHII	8	Unmodified	_LLQIKHII_					0	0	0		ENSG00000114999|ENST00000233336|TTL;ENST00000476615.1_1_2:113258880-113278003:+|nuORF	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.7790832519531	2	489.328945	976.643337	0.37912	0.00018552	-0.77447	-0.00037897	-0.39535	-0.00019345	489.32852778084094	72.063	0.35646	72.063	71.911	72.267	0					16	12	2	0	0	0	0.34218	1	18370	18370		9.3474	0	1	60604			23965	2601	13638	13639	30116	30116					0.15408104478945006
LLQKLAQV	8	Unmodified	_LLQKLAQV_					0	0	0		ENSG00000007171|ENST00000313735|NOS2;nc|ENSG00000007171|P35228-2|NOS2	ENSG00000007171|ENST00000313735|NOS2	ENSG00000007171|ENST00000313735|NOS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2897033691406	2	456.797478	911.580402	0.19796	9.0427E-05	-0.30138	-0.00013767	-0.10342	-4.7243E-05	456.79744508297125	58.929	0.4805	59.02	58.645	59.126	0.091301					23	16	2	0	0	0	0.33245	1	14219	14219		19.439	0	1	125230			23966	372	13639	13640	30117	30117					0.12107538690884212
LLQKVTGQWTR	11	Unmodified	_LLQKVTGQWTR_					0	0	0			REV__ENST00000565298.5_1_16:1576517-1634259:-|nuORF	REV__ENST00000565298.5_1_16:1576517-1634259:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.27947998046875	3	443.9261	1328.75647	0.34431	0.00015285	-0.43811	-0.00019449	-0.093794	-4.1638E-05	443.926002699997	32.788	0.97789	32.788	32.415	33.393	0					101	34	4	0	0	0	0.33122	1	6450	6450		7.0371	4.1938	1	1912200	+		23967	18507	13640	13641	30118	30118					0.10524128134147759
LLQKVTGQWTR	11	Unmodified	_LLQKVTGQWTR_					0	0	0			REV__ENST00000565298.5_1_16:1576517-1634259:-|nuORF	REV__ENST00000565298.5_1_16:1576517-1634259:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.2794494628906	3	443.9261	1328.75647	0.28615	0.00012703	-0.39956	-0.00017738	-0.11341	-5.0345E-05	443.9260407659705	32.659	1.178	32.713	32.167	33.345	0.054371					112	42	4	0	0	0	0.33122	1	6413	6413		7.0371	5.582	1	1722200	+		23968	18507	13640	13641	30119	30119					0.10524128134147759
LLQLKWAAF	9	Unmodified	_LLQLKWAAF_					0	0	0			REV__ENSG00000187664|ENST00000291481|HAPLN4	REV__ENSG00000187664|ENST00000291481|HAPLN4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.7460327148438	2	545.326402	1088.63825	0.52392	0.00028571	1.3842	0.00075483	1.9081	0.0010405	545.3276641334293	71.823	0.40727	71.823	71.582	71.989	0					33	14	3	0	0	0	0.24739	1	18243	18243		8.5933	3.3626	1	118280	+		23969	18512	13641	13642	30120	30120					0.0974780061628735
LLQPARRLAAP	11	Unmodified	_LLQPARRLAAP_					0	0	0			REV__ENST00000476291.1_1_13:114550749-114566917:-|nuORF	REV__ENST00000476291.1_1_13:114550749-114566917:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.3253173828125	2	603.377489	1204.74043	0.7382	0.00044541	-0.39563	-0.00023872	0.34257	0.0002067	603.37725516209	32.515	0.44219	32.515	32.307	32.749	0					25	15	2	0	0	0	0.33318	1	6144	6144		1.3295	0.80477	1	148550	+		23970	18237	13642	13643	30121	30121					0.146244666879511
LLQPARRLAAP	11	Unmodified	_LLQPARRLAAP_					0	0	0			REV__ENST00000476291.1_1_13:114550749-114566917:-|nuORF	REV__ENST00000476291.1_1_13:114550749-114566917:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	603.377489	1204.74043	0.77544	0.00046788	-0.15494	-9.3488E-05	0.6205	0.0003744	603.3772766951262	32.456	0.41289	32.512	32.317	32.73	0.055313	-0.0062656	-0.00021366	NaN	1.3295	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226410	+		23971	18237	13642	13643							0.146244666879511
LLQPARRLAAP	11	Unmodified	_LLQPARRLAAP_					0	0	0			REV__ENST00000476291.1_1_13:114550749-114566917:-|nuORF	REV__ENST00000476291.1_1_13:114550749-114566917:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	603.377489	1204.74043	0.38286	0.00023101	0.28788	0.0001737	0.67075	0.00040471	603.377724894754	32.473	0.42929	32.528	32.336	32.765	0.054375	0.0096992	0.00032072	NaN	1.3295	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85373	+		23972	18237	13642	13643							0.146244666879511
LLQPELII	8	Unmodified	_LLQPELII_					0	0	0			REV__ENST00000588038.5_1_18:31206668-31206954:+|nuORF	REV__ENST00000588038.5_1_18:31206668-31206954:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7997131347656	2	469.799686	937.584819	0.20956	9.845E-05	0.22287	0.00010471	0.43243	0.00020316	469.7996070328504	88.09	0.86685	88.09	87.765	88.632	0					101	45	3	0	0	0	0.13961	2	23234	23234;23276		53.576	0	1	1255300	+		23973	22541	13643	13644	30122;30123	30122					0.11353003113799787
LLQPELII	8	Unmodified	_LLQPELII_					0	0	0			REV__ENST00000588038.5_1_18:31206668-31206954:+|nuORF	REV__ENST00000588038.5_1_18:31206668-31206954:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2425842285156	2	469.799686	937.584819	0.20956	9.845E-05	0.22287	0.00010471	0.43243	0.00020316	469.7996070328504	88.09	0.86685	88.09	87.765	88.632	0					101	45	3	0	0	0	0.31934	1	23339	23339		18.135	0	1	1255300	+		23974	22541	13643	13644	30124	30124					0.11353003113799787
LLQPELII	8	Unmodified	_LLQPELII_					0	0	0			REV__ENST00000588038.5_1_18:31206668-31206954:+|nuORF	REV__ENST00000588038.5_1_18:31206668-31206954:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7996826171875	2	469.799686	937.584819	0.19144	8.9936E-05	0.19494	9.1583E-05	0.38638	0.00018152	469.799592723571	87.917	0.97851	88.006	87.746	88.724	0.089195					120	48	4	0	0	0	0.13961	2	23199	23199;23242		53.576	0	1	1179700	+		23975	22541	13643	13644	30125;30126	30125					0.11353003113799787
LLQPELII	8	Unmodified	_LLQPELII_					0	0	0			REV__ENST00000588038.5_1_18:31206668-31206954:+|nuORF	REV__ENST00000588038.5_1_18:31206668-31206954:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7996520996094	2	469.799686	937.584819	0.29945	0.00014068	0.10354	4.8641E-05	0.40299	0.00018932	469.79957866165876	88.034	0.8469	88.031	87.736	88.583	-0.0028381					105	44	3	0	0	0	0.19197	1	23275	23275		44.407	0	1	1534000	+		23976	22541	13643	13644	30127	30127					0.11353003113799787
LLQPLFPFS	9	Unmodified	_LLQPLFPFS_					0	0	0			REV__ENST00000486360.1_1_1:203045208-203045709:+|nuORF	REV__ENST00000486360.1_1_1:203045208-203045709:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.295166015625	2	531.305136	1060.59572	0.33472	0.00017784	0.111	5.8976E-05	0.44572	0.00023681	531.305210685893	70.026	1.0326	70.092	69.717	70.749	0.066048					140	36	6	0	0	0	0.24581	1	17666	17666		16.942	3.4344	1	842860	+		23977	21550	13644	13645	30128	30128					0.06784405488087941
LLQPRPDLK	9	Unmodified	_LLQPRPDLK_					0	0	0		ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	ENSG00000198597|ENST00000355537|ZNF536	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7800903320312	2	540.332216	1078.64988	0.49176	0.00026572	-0.86656	-0.00046823	-0.37479	-0.00020251	540.331937832686	17.568	0.29193	17.507	17.358	17.65	-0.060429					17	9	3	0	0	0	0.26204	1	1641	1641		1.4819	0	1	35026			23978	8092	13645	13646	30129	30129					0.1136999763964468
LLQQARQARQ	10	Unmodified	_LLQQARQARQ_					0	0	0			REV__ENSG00000107816|ENST00000454422|LZTS2	REV__ENSG00000107816|ENST00000454422|LZTS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.57025146484375	3	404.570427	1210.68945	-0.019256	-7.7902E-06	-0.16283	-6.5878E-05	-0.18209	-7.3668E-05	404.5703960268634	20.568	0.84525	20.568	20.235	21.08	0					71	29	5	0	0	0	0.39935	1	2610	2610		1.7423	0	1	307670	+		23979	14565	13646	13647	30130	30130					0.09253517643082887
LLQRAPSL	8	Unmodified	_LLQRAPSL_					0	0	0			REV__nc|ENSG00000082175|P06401-2|PGR	REV__nc|ENSG00000082175|P06401-2|PGR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.2805480957031	2	449.279452	896.544351	0.29225	0.0001313	1.0885	0.00048903	1.3807	0.00062033	449.27998411598924	41.879	0.24486	41.969	41.881	42.126	0.090252					14	8	2	0	0	0	0.23581	1	9077	9077		38.151	0	1	496610	+		23980	13917	13647	13648	30131	30131					0.09194081514044683
LLQRAPSL	8	Unmodified	_LLQRAPSL_					0	0	0			REV__nc|ENSG00000082175|P06401-2|PGR	REV__nc|ENSG00000082175|P06401-2|PGR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	449.279452	896.544351	0.094332	4.2381E-05	1.0973	0.00049299	1.1916	0.00053537	449.27995241000974	41.959	0.31763	41.959	41.875	42.193	0	-0.0048913	3.6922E-06	NaN	38.151	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	518440	+		23981	13917	13647	13648							0.09194081514044683
LLQRAPSL	8	Unmodified	_LLQRAPSL_					0	0	0			REV__nc|ENSG00000082175|P06401-2|PGR	REV__nc|ENSG00000082175|P06401-2|PGR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	449.279452	896.544351	0.29225	0.0001313	1.0885	0.00048903	1.3807	0.00062033	449.27998411598924	41.879	0.24486	41.969	41.881	42.126	0.090252	0.0048913	-4.218E-06	NaN	38.151	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	496610	+		23982	13917	13647	13648							0.09194081514044683
LLQRTGKQF	9	Unmodified	_LLQRTGKQF_					0	0	0			REV__nc|ENSG00000145194|P0DPD6-3|ECE2	REV__nc|ENSG00000145194|P0DPD6-3|ECE2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8345336914062	2	545.822015	1089.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.605	1	64.698	64.198	65.198	0.09288								0	0	0	0.22789	1	16061	16061		13.508	0	1		+		23983	16281	13648	13649	30132	30132					0.08824826979844147
LLQRTGKQF	9	Unmodified	_LLQRTGKQF_					0	0	0			REV__nc|ENSG00000145194|P0DPD6-3|ECE2	REV__nc|ENSG00000145194|P0DPD6-3|ECE2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.834716796875	2	545.822015	1089.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.673	1	64.663	64.163	65.163	-0.0095291								0	0	0	0.22789	1	16078	16078		13.508	0	1		+		23984	16281	13648	13649	30133	30133					0.08824826979844147
LLQRTQPG	8	Unmodified	_LLQRTQPG_					0	0	0		ENSG00000164850|ENST00000397088|GPER1	ENSG00000164850|ENST00000397088|GPER1	ENSG00000164850|ENST00000397088|GPER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.3011779785156	2	456.766709	911.518865	-0.18833	-8.6022E-05	-0.1555	-7.1026E-05	-0.34382	-0.00015705	456.76672054807295	28.193	0.89548	28.194	27.849	28.745	0.0004673					42	31	2	0	0	0	0.34046	1	4977	4977		14.582	2.0501	1	142000			23985	5885	13649	13650	30134	30134					0.05956606991617264
LLQSFLPQPSA	11	Unmodified	_LLQSFLPQPSA_					0	0	0			REV__ENST00000372850.5_1_9:131151827-131152010:+|nuORF	REV__ENST00000372850.5_1_9:131151827-131152010:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3341674804688	2	600.834788	1199.65502	0.72526	0.00043576	1.3922	0.00083651	2.1175	0.0012723	600.8357852888118	84.312	0.27419	84.312	84.163	84.437	0					19	10	2	0	0	0	0.33037	1	22090	22090		7.609	0	1	576390	+		23986	20423	13650	13651	30135	30135					0.06318256711620052
LLQSGPPHRLV	11	Unmodified	_LLQSGPPHRLV_					0	0	0			REV__ENST00000412132.1_1_6:11810894-11811329:+|nuORF	REV__ENST00000412132.1_1_6:11810894-11811329:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.23162841796875	3	406.24354	1215.70879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.182	1	52.182	51.682	52.682	0								0	0	0	0.35343	1	12232	12232		7.4771	0.84669	1		+		23987	20780	13651	13652	30136	30136					0.10956473933993038
LLQSGPPHRLV	11	Unmodified	_LLQSGPPHRLV_					0	0	0			REV__ENST00000412132.1_1_6:11810894-11811329:+|nuORF	REV__ENST00000412132.1_1_6:11810894-11811329:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.23175048828125	3	406.24354	1215.70879	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.158	1	52.208	51.708	52.708	0.050575								0	0	0	0.35343	1	12223	12223		7.4771	0.43998	1		+		23988	20780	13651	13652	30137	30137					0.10956473933993038
LLQSGVISCY	10	Unmodified	_LLQSGVISCY_					0	0	0		ENST00000502747.1_1_5:79454657-79462329:-|nuORF;nc|ENSG00000164300|Q86VE9-3|SERINC5;nc|ENSG00000164300|Q86VE9-2|SERINC5;nc|ENSG00000164300|Q86VE9|SERINC5;ENSG00000164300|ENST00000507668|SERINC5	ENST00000502747.1_1_5:79454657-79462329:-|nuORF	ENST00000502747.1_1_5:79454657-79462329:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7689819335938	2	541.781167	1081.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.13	1	58.113	57.613	58.613	-0.0172								0	0	0	0.34209	1	14070	14070		18.146	1.0335	1				23989	5822	13652	13653	30138	30138					0.01026963505751155
LLQSHLLARGR	11	Unmodified	_LLQSHLLARGR_					0	0	0			REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	REV__ENST00000522899.1_1_8:144462370-144462733:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5349426269531	3	421.926322	1262.75714	-0.33302	-0.00014051	0.081012	3.4181E-05	-0.25201	-0.00010633	421.92614795186364	27.728	0.47795	27.728	27.53	28.008	0					25	16	2	0	0	0	0.3322	1	4726	4726		4.7159	0.83959	1	81979	+		23990	21921	13653	13654	30139	30139					0.13626967573873117
LLQVAKGL	8	Unmodified	_LLQVAKGL_					0	0	0		nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1;ENST00000515106.1_1_4:113299012-113333584:+|nuORF;ENST00000504745.1_1_4:113303669-113346918:+|nuORF;ENST00000505912.1_1_4:113332098-113335446:+|nuORF	nc|ENSG00000073331|Q96QP1-2|ALPK1	nc|ENSG00000073331|Q96QP1-2|ALPK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.5346374511719	2	421.278921	840.543289	-0.30771	-0.00012963	0.93159	0.00039246	0.62388	0.00026283	421.2791734950814	27.713	0.45558	27.692	27.493	27.949	-0.021412					22	15	2	0	0	0	0.34297	1	4773	4773		2.8892	0	1	70622			23991	1000	13654	13655	30140	30140					0.11663867145136919
LLQVTFTGF	9	Unmodified	_LLQVTFTGF_					0	0	0			REV__ENST00000456143.1_22:16404699-16405137:+|nuORF	REV__ENST00000456143.1_22:16404699-16405137:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2870483398438	2	513.286943	1024.55933	0.26809	0.00013761	0.2538	0.00013027	0.52189	0.00026788	513.286829043379	48.619	1.3428	48.651	48.232	49.574	0.032043					146	48	4	0	0	0	0.25314	1	11241	11241		15.847	1.9411	1	5708000	+		23992	21168	13655	13656	30141	30141					0.04803528591401118
LLRAAPLLL	9	Unmodified	_LLRAAPLLL_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.3367919921875	2	490.33677	978.658987	0.48833	0.00023945	-0.19757	-9.6876E-05	0.29076	0.00014257	490.3371583607938	75.053	2.5259	75.053	74.679	77.204	0					264	91	5	0	0	0	0.20344	2	19483	19483;19530		23.148	2.6948	1	40627000			23993	915	13656	13657	30142;30143	30142					0.16880390995981998
LLRAAPLLL	9	Unmodified	_LLRAAPLLL_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2637939453125	2	490.33677	978.658987	0.46656	0.00022877	-0.29272	-0.00014353	0.17383	8.5237E-05	490.33659139691787	79.164	2.0585	79.164	78.511	80.569	0					118	80	2	0	0	0	0.25066	1	20333	20333		11.64	3.7301	1	112240			23994	915	13656	13657	30144	30144					0.16880390995981998
LLRAAPLLL	9	Unmodified	_LLRAAPLLL_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.3367919921875	2	490.33677	978.658987	0.36106	0.00017704	-0.085912	-4.2126E-05	0.27515	0.00013492	490.337302990868	74.977	4.6922	75.03	74.671	79.363	0.052368					322	176	5	0	0	0	0.20344	3	19452	19452;19513;19562		23.148	5.0134	1	48233000			23995	915	13656	13657	30145;30146;30147	30145					0.16880390995981998
LLRAAPLLL	9	Unmodified	_LLRAAPLLL_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.3367004394531	2	490.33677	978.658987	0.60521	0.00029676	-0.23835	-0.00011687	0.36686	0.00017988	490.33709103568157	75.086	1.6462	75.055	74.7	76.346	-0.031487					198	60	5	0	0	0	0.20344	2	19482	19482;19540		23.148	7.3012	1	35649000			23996	915	13656	13657	30148;30149	30148					0.16880390995981998
LLRAAPLLL	9	Unmodified	_LLRAAPLLL_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.75048828125	2	490.33677	978.658987	0.46797	0.00022946	-0.2394	-0.00011739	0.22857	0.00011208	490.33652949209164	76.48	0.53374	76.449	76.318	76.852	-0.031487					30	19	2	0	0	0	0.21905	1	19648	19648		23.148	15.238	1	243490			23997	915	13656	13657	30150	30150					0.16880390995981998
LLRAAPLLL	9	Unmodified	_LLRAAPLLL_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	490.33677	978.658987	0.36964	0.00018125	-0.075546	-3.7043E-05	0.29409	0.00014421	490.3367005417113	79.475	0.86444	79.536	79.372	80.237	0.061417	0.18608	0.00016118	NaN	11.64	45	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93918			23998	915	13656	13657							0.16880390995981998
LLRALPLTL	9	Unmodified	_LLRALPLTL_					0	0	0			REV__ENSG00000139641|ENST00000394048|ESYT1	REV__ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.3417663574219	2	505.342052	1008.66955	0.42593	0.00021524	2.5426	0.0012849	2.9685	0.0015001	505.34372007579987	74.326	1.1102	74.295	74	75.11	-0.030655					96	39	4	0	0	0	0.17787	1	18979	18979		26.884	7.6267	1	3356000	+		23999	15999	13657	13658	30151	30151					0.16556373650416845
LLRARPVIT	9	Unmodified	_LLRARPVIT_					0	0	0		ITGA9|p.H902Lfs*11|1|0.44|ENSG00000144668|chr3:37779939-37779951|ACTGTAACTTTAG/-|frameshift_variant;ENSG00000144668|ENST00000264741|ITGA9	ITGA9|p.H902Lfs*11|1|0.44|ENSG00000144668|chr3:37779939-37779951|ACTGTAACTTTAG/-|frameshift_variant	ITGA9|p.H902Lfs*11|1|0.44|ENSG00000144668|chr3:37779939-37779951|ACTGTAACTTTAG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.8424682617188	2	519.842751	1037.67095	0.65335	0.00033964	-0.30676	-0.00015947	0.34659	0.00018017	519.84236190975	54.844	0.3002	54.907	54.805	55.105	0.063202					13	10	2	0	0	0	0.25314	1	13071	13071		15.847	1.9411	1	274340			24000	4602	13658	13659	30152	30152					0.15362007739167893
LLRASIGYF	9	Unmodified	_LLRASIGYF_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3005981445312	2	520.300384	1038.58622	0.25889	0.0001347	-0.83181	-0.00043279	-0.57292	-0.00029809	520.3003179151718	61.476	2.532	61.476	61.103	63.635	0					331	94	8	0	0	0	0.20344	1	15501	15501		23.148	0.41214	1	51396000			24001	2256	13659	13660	30153	30153					0.06846637202556849
LLRASIGYF	9	Unmodified	_LLRASIGYF_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3005981445312	2	520.300384	1038.58622	0.05127	2.6676E-05	-0.57214	-0.00029768	-0.52087	-0.00027101	520.3004436432942	61.346	2.3007	61.443	61.116	63.417	0.096985					288	84	8	0	0	0	0.20344	1	15452	15452		23.148	1.4018	1	53725000			24002	2256	13659	13660	30154	30154					0.06846637202556849
LLRCCLSML	9	Unmodified	_LLRCCLSML_					0	0	0			REV__nc|ENSG00000009335|Q15386-3|UBE3C	REV__nc|ENSG00000009335|Q15386-3|UBE3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7953491210938	2	526.276683	1050.53881	0.61046	0.00032127	0.20152	0.00010605	0.81197	0.00042732	526.2764595348184	59.145	0.80028	59.13	58.656	59.456	-0.014267					48	27	2	0	0	0	0.24913	1	14262	14262		7.9102	0	1	604510	+		24003	13405	13660	13661	30155	30155					0.015565753440341723
LLRDGVKLS	9	Unmodified	_LLRDGVKLS_					0	0	0			REV__ENSG00000144596|ENST00000621039|GRIP2	REV__ENSG00000144596|ENST00000621039|GRIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.8007507324219	2	500.811116	999.60768	0.27352	0.00013698	-0.45927	-0.00023001	-0.18575	-9.3023E-05	500.81090934190496	26.576	0.4547	26.537	26.316	26.771	-0.038671					35	15	3	0	0	0	0.22188	1	4375	4375		20.454	0	1	236120	+		24004	16246	13661	13662	30156	30156					0.10786022231286552
LLRDGVKLS	9	Unmodified	_LLRDGVKLS_					0	0	0			REV__ENSG00000144596|ENST00000621039|GRIP2	REV__ENSG00000144596|ENST00000621039|GRIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.8006896972656	2	500.811116	999.60768	0.49939	0.0002501	-0.69096	-0.00034604	-0.19158	-9.5944E-05	500.81077289281666	26.604	0.54056	26.582	26.328	26.869	-0.022238					37	18	3	0	0	0	0.17787	1	4387	4387		26.884	0	1	219360	+		24005	16246	13661	13662	30157	30157					0.10786022231286552
LLRDGVKLS	9	Unmodified	_LLRDGVKLS_					0	0	0			REV__ENSG00000144596|ENST00000621039|GRIP2	REV__ENSG00000144596|ENST00000621039|GRIP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	500.811116	999.60768	0.25742	0.00012892	-0.4046	-0.00020263	-0.14718	-7.3708E-05	500.81095901623655	26.607	0.46294	26.607	26.35	26.813	0	0.031756	7.9782E-05	NaN	26.884	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209810	+		24006	16246	13661	13662							0.10786022231286552
LLRDGVKLS	9	Unmodified	_LLRDGVKLS_					0	0	0			REV__ENSG00000144596|ENST00000621039|GRIP2	REV__ENSG00000144596|ENST00000621039|GRIP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	500.811116	999.60768	0.27352	0.00013698	-0.45927	-0.00023001	-0.18575	-9.3023E-05	500.81090934190496	26.576	0.4547	26.537	26.316	26.771	-0.038671	-0.038147	2.5024E-05	NaN	26.884	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236120	+		24007	16246	13661	13662							0.10786022231286552
LLRDGVKLS	9	Unmodified	_LLRDGVKLS_					0	0	0			REV__ENSG00000144596|ENST00000621039|GRIP2	REV__ENSG00000144596|ENST00000621039|GRIP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	500.811116	999.60768	0.49939	0.0002501	-0.69096	-0.00034604	-0.19158	-9.5944E-05	500.81077289281666	26.604	0.54056	26.582	26.328	26.869	-0.022238	0.0063917	-0.00020705	NaN	26.884	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219360	+		24008	16246	13661	13662							0.10786022231286552
LLREDIFK	8	Unmodified	_LLREDIFK_					0	0	0			REV__ENSG00000149289|ENST00000278590|ZC3H12C	REV__ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3055419921875	2	517.305667	1032.59678	0.12096	6.2574E-05	-0.16517	-8.5443E-05	-0.044207	-2.2869E-05	517.3055666988578	60.328	0.70802	60.423	60.131	60.839	0.095089					56	25	3	0	0	0	0.22	1	14767	14767		39.957	1.7818	1	2024400	+		24009	16457	13662	13663	30158	30158					0.08178619856994374
LLRIGDVSL	9	Unmodified	_LLRIGDVSL_					0	0	0			REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.3059997558594	2	493.305667	984.596781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.641	1	63.632	63.132	64.132	-0.0085526								0	0	0	0.17683	1	15762	15762		28.487	0	1		+		24010	16723	13663	13664	30159	30159					0.10386619857001733
LLRIGPNLL	9	Unmodified	_LLRIGPNLL_					0	0	0			REV__ENST00000265198.8_1_6:154610856-154677864:-|nuORF	REV__ENST00000265198.8_1_6:154610856-154677864:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7718811035156	2	504.831852	1007.64915	0.018028	9.1011E-06	0.49274	0.00024875	0.51077	0.00025785	504.83203290123333	61.265	0.39376	61.362	61.221	61.615	0.096985					18	14	2	0	0	0	0.21905	1	15107	15107		11.64	0	1	253260	+		24011	19649	13664	13665	30160	30160					0.14563202990609625
LLRKGRKF	8	Unmodified	_LLRKGRKF_					0	0	0			REV__ENST00000305949.5_1_8:121519055-121522193:+|nuORF	REV__ENST00000305949.5_1_8:121519055-121522193:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8040771484375	2	509.337636	1016.66072	0.67464	0.00034362	1.882	0.00095859	2.5567	0.0013022	509.33873163261194	78.62	0.097946	78.589	78.532	78.63	-0.030434					5	3	2	0	0	0	0.34185	1	20322	20322		10.183	1.5901	1	31120	+		24012	19854	13665	13666	30161	30161					0.1530544480460776
LLRKHQER	8	Unmodified	_LLRKHQER_					0	0	0		nc|ENSG00000289701|Q9H257-2|CARD9;ENSG00000187796|ENST00000371732|CARD9;ENST00000556340.1_1_9:139265151-139266545:-|nuORF;nc|ENSG00000289701|Q9H257-3|CARD9	nc|ENSG00000289701|Q9H257-2|CARD9	nc|ENSG00000289701|Q9H257-2|CARD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.278076171875	2	540.325257	1078.63596	0.20456	0.00011053	-0.28681	-0.00015497	-0.082256	-4.4445E-05	540.325229816245	14.403	0.57467	14.337	14.098	14.672	-0.066068					36	20	2	0	0	0	0.34367	1	673	673		4.3292	0	1	90247			24013	7710	13666	13667	30162	30162					0.0997876493122476
LLRKHWIA	8	Unmodified	_LLRKHWIA_					0	0	0		nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;ENST00000483310.5_1_20:30136863-30150236:+|nuORF;ENST00000472128.5_1_20:30136905-30155443:+|nuORF;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;ENST00000464173.5_1_20:30136866-30137929:+|nuORF;ENST00000460389.5_1_20:30136650-30157019:+|nuORF	nc|ENSG00000101294|Q8TCT9|HM13	nc|ENSG00000101294|Q8TCT9|HM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2958374023438	2	518.824361	1035.63417	0.32925	0.00017082	-2.8156	-0.0014608	-2.4863	-0.00129	518.8200880440124	49.715	0.55603	49.76	49.425	49.981	0.044891					39	20	3	0	0	0	0.34297	1	11413	11413		6.3541	0.59368	1	343030			24014	1681	13667	13668	30163	30163					0.11777755913271903
LLRKRELL	8	Unmodified	_LLRKRELL_					0	0	0			REV__nc|ENSG00000107968|P41279-2|MAP3K8	REV__nc|ENSG00000107968|P41279-2|MAP3K8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.850830078125	2	520.850576	1039.6866	0.69901	0.00036408	-0.35483	-0.00018481	0.34417	0.00017926	520.8503205133865	54.328	0.86478	54.328	53.999	54.864	0					76	31	4	0	0	0	0.27124	2	12926	12871;12926		34.102	5.6156	1	1916200	+		24015	14578	13668	13669	30164;30165	30165					0.16834294256227622
LLRKRELL	8	Unmodified	_LLRKRELL_					0	0	0			REV__nc|ENSG00000107968|P41279-2|MAP3K8	REV__nc|ENSG00000107968|P41279-2|MAP3K8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.28955078125	2	520.850576	1039.6866	0.69901	0.00036408	-0.35483	-0.00018481	0.34417	0.00017926	520.8503205133865	54.328	0.86478	54.328	53.999	54.864	0					76	31	4	0	0	0	0.31617	1	12869	12869		26.884	3.7352	1	1916200	+		24016	14578	13668	13669	30166	30166					0.16834294256227622
LLRKRELL	8	Unmodified	_LLRKRELL_					0	0	0			REV__nc|ENSG00000107968|P41279-2|MAP3K8	REV__nc|ENSG00000107968|P41279-2|MAP3K8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.850830078125	2	520.850576	1039.6866	0.60117	0.00031312	-0.2131	-0.00011099	0.38806	0.00020212	520.8504726129228	54.277	0.80046	54.34	54.063	54.863	0.063206					78	29	4	0	0	0	0.20518	1	12866	12866		42.095	11.87	1	1731900	+		24017	14578	13668	13669	30167	30167					0.16834294256227622
LLRLAPLL	8	Unmodified	_LLRLAPLL_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000462785.1_1_2:112526870-112536431:-|nuORF;ENST00000454465.1_1_2:87398353-87423749:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2776184082031	2	454.818213	907.621873	0.68347	0.00031085	-0.41249	-0.00018761	0.27098	0.00012325	454.81807770499057	77.983	0.41668	77.952	77.705	78.122	-0.030434					20	14	2	0	0	0	0.34218	1	20110	20110		9.3474	0	1	113400			24018	5060	13669	13670	30168	30168					0.16436719450211967
LLRLGTSLL	9	Unmodified	_LLRLGTSLL_					0	0	0		ENST00000565644.5_1_16:87866091-87866229:-|nuORF	ENST00000565644.5_1_16:87866091-87866229:-|nuORF	ENST00000565644.5_1_16:87866091-87866229:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.7898254394531	2	493.32386	984.633166	0.51642	0.00025476	2.9586	0.0014595	3.475	0.0017143	493.3257777493147	63.561	0.1764	63.657	63.591	63.768	0.095722					8	5	2	0	0	0	0.25417	1	15725	15725		8.5933	0	1	86004			24019	11967	13670	13671	30169	30169					0.1402349675371397
LLRPALALI	9	Unmodified	_LLRPALALI_					0	0	0			REV__ENST00000482974.1_1_3:50614485-50617422:+|nuORF	REV__ENST00000482974.1_1_3:50614485-50617422:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2636413574219	2	490.33677	978.658987	0.27383	0.00013427	-2.3724	-0.0011633	-2.0985	-0.001029	490.3358258332084	82.149	0.2941	82.218	82.154	82.448	0.068985					14	11	2	0	0	0	0.24913	1	21438	21438		12.532	0.89125	1	116740	+		24020	14843	13671	13672	30170	30170					0.16880390995981998
LLRPGTALI	9	Unmodified	_LLRPGTALI_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.3106384277344	2	477.310752	952.606951	0.21071	0.00010057	-0.23712	-0.00011318	-0.02641	-1.2606E-05	477.3104759077226	62.671	1.7525	62.671	62.162	63.915	0					106	64	3	0	0	0	0.11461	1	15510	15510		36.127	0	1	831230			24021	8656	13672	13673	30171	30171					0.12875227582219395
LLRPGTALI	9	Unmodified	_LLRPGTALI_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.3106384277344	2	477.310752	952.606951	0.24945	0.00011907	-0.19258	-9.192E-05	0.056875	2.7147E-05	477.3105013440409	62.666	0.99827	62.657	62.219	63.217	-0.0085526					79	36	3	0	0	0	0.11461	1	15486	15486		36.127	0	1	720160			24022	8656	13672	13673	30172	30172					0.12875227582219395
LLRPLFLL	8	Unmodified	_LLRPLFLL_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-2|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8023681640625	2	492.833863	983.653173	0.46317	0.00022827	-0.33028	-0.00016277	0.13289	6.5494E-05	492.83357290974124	82.582	0.42124	82.561	82.396	82.818	-0.020576					40	16	3	0	0	0	0.31934	1	21567	21567		18.135	0	1	373150			24023	5305	13673	13674	30173	30173					0.160692924843147
LLRPSPPF	8	Unmodified	_LLRPSPPF_					0	0	0		ENSG00000143224|ENST00000367999|PPOX;ENST00000490768.1_1_1:161137040-161137992:+|nuORF	ENSG00000143224|ENST00000367999|PPOX;ENST00000490768.1_1_1:161137040-161137992:+|nuORF;REV__ENST00000171111.9_2_19:10610689-10614227:-|nuORF	ENSG00000143224|ENST00000367999|PPOX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.28472900390625	2	463.776545	925.538538	0.054459	2.5257E-05	-0.65047	-0.00030167	-0.59602	-0.00027642	463.7763755883572	66.685	0.75365	66.672	66.485	67.239	-0.013588					41	26	2	0	0	0	0.34185	1	16842	16842		10.183	2.8942	1	289370			24024	4491;11165;19386	13674	13675	30174	30174					0.07278983002368022
LLRQDLPLL	9	Unmodified	_LLRQDLPLL_					0	0	0			REV__ENST00000504208.5_1_5:136964069-137033992:-|nuORF	REV__ENST00000504208.5_1_5:136964069-137033992:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.3055419921875	2	540.842416	1079.67028	0.36882	0.00019947	-0.0021705	-1.1739E-06	0.36665	0.0001983	540.8423334561534	73.527	0.080223	73.581	73.525	73.606	0.053841					4	2	2	0	0	0	0.24913	1	18774	18774		4.3292	0	1	33521	+		24025	16321	13675	13676	30175	30175					0.13363168299474637
LLRRDMLYYK	10	Unmodified	_LLRRDMLYYK_					0	0	0		nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957|ENST00000382108|SPATA13	nc|ENSG00000228741|Q96N96-5|SPATA13	nc|ENSG00000228741|Q96N96-5|SPATA13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.164306640625	3	457.591952	1369.75403	0.0080425	3.6802E-06	-0.19374	-8.8652E-05	-0.18569	-8.4972E-05	457.59186257190294	24.145	1.1286	24.145	23.857	24.986	0					116	38	4	0	0	0	0.31651	1	3602	3602		11.518	0	1	493450			24026	7336	13676	13677	30176	30176					0.0839395640487055
LLRRDMLYYK	10	Unmodified	_LLRRDMLYYK_					0	0	0		nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957|ENST00000382108|SPATA13	nc|ENSG00000228741|Q96N96-5|SPATA13	nc|ENSG00000228741|Q96N96-5|SPATA13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.1642761230469	3	457.591952	1369.75403	0.12869	5.8885E-05	-0.26783	-0.00012256	-0.13915	-6.3672E-05	457.5918191976202	24.364	1.4435	24.292	23.935	25.378	-0.072559					125	49	4	0	0	0	0.31651	1	3757	3757		11.518	0	1	568400			24027	7336	13676	13677	30177	30177					0.0839395640487055
LLRRDMLYYK	10	Unmodified	_LLRRDMLYYK_					0	0	0		nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13;nc|ENSG00000228741|Q96N96-4|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13;ENSG00000182957|ENST00000382108|SPATA13	nc|ENSG00000228741|Q96N96-5|SPATA13	nc|ENSG00000228741|Q96N96-5|SPATA13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.1641845703125	3	457.591952	1369.75403	0.043875	2.0077E-05	-0.20007	-9.1551E-05	-0.1562	-7.1474E-05	457.59190515904766	24.308	1.2641	24.269	23.965	25.229	-0.038927					116	43	4	0	0	0	0.31597	1	3822	3822		12.175	1.8595	1	572100			24028	7336	13676	13677	30178	30178					0.0839395640487055
LLRRGVVDL	9	Unmodified	_LLRRGVVDL_					0	0	0			REV__ENST00000373055.5_1_1:38158113-38158182:+|nuORF	REV__ENST00000373055.5_1_1:38158113-38158182:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2965698242188	2	520.832383	1039.65021	0.368	0.00019167	-2.0236	-0.001054	-1.6556	-0.0008623	520.830817881705	67.907	0.39645	67.891	67.727	68.124	-0.016296					19	13	2	0	0	0	0.2451	1	17121	17121		10.824	0	1	168940	+		24029	20427	13677	13678	30179	30179					0.13197417359515384
LLRRPPTTER	10	Unmodified	_LLRRPPTTER_					0	0	0		ENST00000330964.9_1_15:63449741-63449897:-|nuORF	ENST00000330964.9_1_15:63449741-63449897:-|nuORF	ENST00000330964.9_1_15:63449741-63449897:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3727416992188	2	619.870028	1237.7255	0.059321	3.6771E-05	-0.043359	-2.6877E-05	0.015962	9.8941E-06	619.8691191290153	95.362	0.55869	95.362	94.896	95.455	0					76	50	2	0	0	0	0.41085	1	25460	25460		1.4819	0	1	102730			24030	9443	13678	13679	30180	30180					0.11614974819894996
LLRRPPTTER	10	Unmodified	_LLRRPPTTER_					0	0	0		ENST00000330964.9_1_15:63449741-63449897:-|nuORF	ENST00000330964.9_1_15:63449741-63449897:-|nuORF	ENST00000330964.9_1_15:63449741-63449897:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3388671875	2	619.870028	1237.7255	-0.10287	-6.3767E-05	-1.6133	-0.001	-1.7162	-0.0010638	619.8693595011697	101.8	0.24899	101.83	101.6	101.85	0.027206					49	34	2	0	0	0	0.32132	1	27120	27120		1.4819	0	1	100270			24031	9443	13678	13679	30181	30181					0.11614974819894996
LLRRRFLHLKK	11	Unmodified	_LLRRRFLHLKK_					0	0	0		MYO10|p.L1518Mfs*53|1|0.04|ENSG00000145555|chr5:16676145-16676146|-/AGACCAT|frameshift_variant;ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	MYO10|p.L1518Mfs*53|1|0.04|ENSG00000145555|chr5:16676145-16676146|-/AGACCAT|frameshift_variant	MYO10|p.L1518Mfs*53|1|0.04|ENSG00000145555|chr5:16676145-16676146|-/AGACCAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7664794921875	3	493.996412	1478.96741	0.037071	1.8313E-05	-0.77645	-0.00038356	-0.73938	-0.00036525	493.99625136806577	12.092	0.060209	12.092	12.04	12.1	0					4	2	2	0	0	0	0.48495	1	18	18		0.08335	0.08335	1	4592.1			24032	4658	13679	13680	30182	30182					0.24708049966716317
LLRRWCLLHLR	11	Unmodified	_LLRRWCLLHLR_					0	0	0		ENST00000334350.6_1_16:56691630-56693012:+|nuORF	ENST00000334350.6_1_16:56691630-56693012:+|nuORF	ENST00000334350.6_1_16:56691630-56693012:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.3240051269531	3	493.634485	1477.88163	0.37035	0.00018282	-2.1304	-0.0010516	-1.7601	-0.00086883	493.6335546961143	40.809	0.49238	40.809	40.576	41.069	0					31	17	2	0	0	0	0.33326	1	8798	8798		1.4551	0.12547	1	347450			24033	9466	13680	13681	30183	30183					0.16180141789550362
LLRSGFHF	8	Unmodified	_LLRSGFHF_					0	0	0			REV__ENST00000423100.5_1_9:131901699-131901777:+|nuORF	REV__ENST00000423100.5_1_9:131901699-131901777:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.77130126953125	2	488.771794	975.529036	0.10089	4.9311E-05	0.13311	6.5058E-05	0.23399	0.00011437	488.7712577606468	19.075	1.0554	19.017	18.458	19.514	-0.058172					93	36	4	0	0	0	0.45169	1	2160	2160		5.2307	0	1	272460	+		24034	20876	13681	13682	30184	30184					0.040292147168543124
LLRVCAPPLV	10	Unmodified	_LLRVCAPPLV_					0	0	0			REV__ENSG00000145214|ENST00000273814|DGKQ	REV__ENSG00000145214|ENST00000273814|DGKQ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8330078125	2	540.833537	1079.65252	0.60207	0.00032562	-3.7165	-0.00201	-3.1144	-0.0016844	540.8324534392195	68.627	2.7535	68.608	68.223	70.976	-0.01915					310	98	6	0	0	0	0.27059	1	17314	17314		24.021	1.2843	1	81405000	+		24035	16283	13682	13683	30185	30185					0.11588129772940192
LLRVIQTHQR	10	Unmodified	_LLRVIQTHQR_					0	0	0			REV__ENSG00000101752|ENST00000261537|MIB1	REV__ENSG00000101752|ENST00000261537|MIB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.53509521484375	3	421.926322	1262.75714	-0.33501	-0.00014135	-0.052453	-2.2131E-05	-0.38746	-0.00016348	421.926235593234	27.758	0.51311	27.736	27.493	28.006	-0.02141					24	17	2	0	0	0	0.32051	1	4718	4718		3.8763	0	1	64311	+		24036	14286	13683	13684	30186	30186					0.13626967573873117
LLRVTGYPF	9	Unmodified	_LLRVTGYPF_					0	0	0		ENST00000476724.1_1_1:45120771-45140087:-|nuORF;ENST00000372242.7_1_1:45120771-45140016:-|nuORF	ENST00000476724.1_1_1:45120771-45140087:-|nuORF	ENST00000476724.1_1_1:45120771-45140087:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3085327148438	2	533.30821	1064.60187	0.43879	0.00023401	0.16515	8.8078E-05	0.60395	0.00032209	533.3081670194999	65.392	1.7781	65.392	64.91	66.688	0					126	63	4	0	0	0	0.11461	1	16408	16408		36.127	0	1	7245200			24037	9836	13684	13685	30187	30187					0.07214923719607214
LLRYPLVLA	9	Unmodified	_LLRYPLVLA_					0	0	0			REV__ENST00000508158.5_1_4:3386893-3430067:+|nuORF	REV__ENST00000508158.5_1_4:3386893-3430067:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8133544921875	2	529.342052	1056.66955	0.52348	0.0002771	-0.038346	-2.0298E-05	0.48513	0.0002568	529.342137226661	79.731	0.26071	79.731	79.612	79.872	0					14	9	2	0	0	0	0.25811	1	20676	20676		5.2307	0	1	103680	+		24038	21770	13685	13686	30188	30188					0.14348373650409485
LLSAPRLAL	9	Unmodified	_LLSAPRLAL_					0	0	0		ENST00000436493.2_1_5:1589388-1594626:-|nuORF	ENST00000436493.2_1_5:1589388-1594626:-|nuORF	ENST00000436493.2_1_5:1589388-1594626:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.3106994628906	2	477.310752	952.606951	0.24945	0.00011907	-0.19258	-9.192E-05	0.056875	2.7147E-05	477.3105013440409	62.666	0.99827	62.657	62.219	63.217	-0.0085526					79	36	3	0	0	0	0.15219	1	15438	15438		30.637	3.0077	1	720160			24039	10524	13686	13687	30189	30189					0.12875227582219395
LLSAQSQQF	9	Unmodified	_LLSAQSQQF_					0	0	0			REV__nc|ENSG00000117713|O14497-3|ARID1A	REV__nc|ENSG00000117713|O14497-3|ARID1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.3113708496094	2	511.269281	1020.52401	0.21085	0.0001078	-0.4999	-0.00025558	-0.28904	-0.00014778	511.26892875844237	37.777	0.55265	37.875	37.682	38.235	0.097527					26	19	2	0	0	0	0.25066	1	7784	7784		11.64	1.4569	1	97250	+		24040	14989	13687	13688	30190	30190					0.0145686606357458
LLSARSFPR	9	Unmodified	_LLSARSFPR_					0	0	0		nc|ENSG00000171435|Q6VAB6-2|KSR2;ENST00000545002.1_1_12:117955650-118115004:-|nuORF;ENSG00000171435|ENST00000339824|KSR2	nc|ENSG00000171435|Q6VAB6-2|KSR2	nc|ENSG00000171435|Q6VAB6-2|KSR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.79248046875	2	523.808908	1045.60326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.971	1	41.068	40.568	41.568	0.096626								0	0	0	0.23852	1	8780	8780		10.074	1.4806	1				24041	6539	13688	13689	30191	30191					0.08228557808365622
LLSCWLPPF	9	Unmodified	_LLSCWLPPF_					0	0	0		ENST00000509805.5_1_5:69363243-69366626:+|nuORF;nc|ENSG00000205571|Q16637-3|SMN1;ENSG00000205571|ENST00000380743|SMN2;ENSG00000172062|ENST00000380707|SMN1	ENST00000509805.5_1_5:69363243-69366626:+|nuORF	ENST00000509805.5_1_5:69363243-69366626:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.8079223632812	2	538.285889	1074.55722	0.39608	0.0002132	-1.6099	-0.00086658	-1.2138	-0.00065338	538.786144003072	92.477	0.40501	92.566	92.343	92.748	0.089203					41	26	2	0	0	0	0.25291	1	24585	24585		9.3474	0.75416	1	236900			24042	6603	13689	13690	30192	30192					0.022927765818849366
LLSDPHLALL	10	Unmodified	_LLSDPHLALL_					0	0	0		ENST00000333055.8_1_5:180218041-180218203:-|nuORF	ENST00000333055.8_1_5:180218041-180218203:-|nuORF	ENST00000333055.8_1_5:180218041-180218203:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.714111328125	2	546.326599	1090.63865	0.6483	0.00035418	0.11505	6.2854E-05	0.76335	0.00041704	546.3260038426052	64.525	1.2033	64.618	64.234	65.438	0.09288					104	44	3	0	0	0	0.27772	1	16100	16100		26.884	0	1	443760			24043	9457	13690	13691	30193	30193					0.09695175545516577
LLSGFSVF	8	Unmodified	_LLSGFSVF_					0	0	0		nc|ENSG00000071967|Q53TN4-3|CYBRD1;ENSG00000071967|ENST00000321348|CYBRD1	nc|ENSG00000071967|Q53TN4-3|CYBRD1	nc|ENSG00000071967|Q53TN4-3|CYBRD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2514953613281	2	435.242004	868.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.667	1	72.638	72.138	73.138	-0.029305								0	0	0	0.36169	1	18520	18520		9.3474	0	1				24044	965	13691	13692	30194	30194					0.029958989828060112
LLSGRDPR	8	Unmodified	_LLSGRDPR_					0	0	0		ENSG00000206422|ENST00000383467|LRRC30	ENSG00000206422|ENST00000383467|LRRC30	ENSG00000206422|ENST00000383467|LRRC30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2645263671875	2	457.264333	912.514114	0.23629	0.00010805	-0.064452	-2.9471E-05	0.17184	7.8577E-05	457.26421229697945	73.058	1.9871	73.028	72.657	74.644	-0.029305					175	71	4	0	0	0	0.45307	1	19064	19064		4.756	1.4747	1	2046400			24045	8319	13692	13693	30195	30195					0.054357228488470355
LLSGVVDQTKD	11	Unmodified	_LLSGVVDQTKD_					0	0	0		nc|ENSG00000004864|Q9UJS0-2|SLC25A13;ENSG00000004864|ENST00000265631|SLC25A13	nc|ENSG00000004864|Q9UJS0-2|SLC25A13	nc|ENSG00000004864|Q9UJS0-2|SLC25A13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8171997070312	2	587.819335	1173.62412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.109	1	91.109	90.609	91.609	0								0	0	0	0.37382	1	24180	24180		2.9952	1.151	1				24046	317	13693	13694	30196	30196					0.0442505860669371
LLSHGPLL	8	Unmodified	_LLSHGPLL_					0	0	0		ENST00000374103.8_1_10:50964838-50966574:-|nuORF	ENST00000374103.8_1_10:50964838-50966574:-|nuORF	ENST00000374103.8_1_10:50964838-50966574:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.2633056640625	2	425.263271	848.511988	-0.07413	-3.1525E-05	-0.18169	-7.7268E-05	-0.25582	-0.00010879	425.263318741529	58.837	1.5132	58.928	58.56	60.073	0.091301					175	53	6	0	0	0	0.083534	3	14317	14231;14317;14358		63.394	8.7807	1	9340600			24047	9887	13694	13695	30197;30198;30199	30198					0.08167294111046886
LLSHIKDF	8	Unmodified	_LLSHIKDF_					0	0	0			REV__nc|ENSG00000119392|Q53GS7-2|GLE1	REV__nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7794189453125	2	486.779285	971.544017	0.313	0.00015236	-0.14723	-7.1669E-05	0.16577	8.0692E-05	486.77926521777965	68.002	0.62039	67.985	67.727	68.348	-0.016296					34	21	2	0	0	0	0.26527	1	17111	17111		28.487	0	1	497500	+		24048	15039	13695	13696	30200	30200					0.057106617941940385
LLSHLNLY	8	Unmodified	_LLSHLNLY_					0	0	0			REV__nc|ENSG00000161847|Q8IY67-2|RAVER1	REV__nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7792053222656	2	486.779285	971.544017	0.36813	0.0001792	-0.015519	-7.5544E-06	0.35261	0.00017164	486.7793237072611	67.889	0.72546	67.968	67.715	68.44	0.078041					45	25	3	0	0	0	0.23736	1	17083	17083		37.974	3.8716	1	394400	+		24049	16951	13696	13697	30201	30201					0.0571066179418267
LLSHPRLL	8	Unmodified	_LLSHPRLL_					0	0	0			REV__ENST00000462628.5_1_19:55146093-55147330:+|nuORF	REV__ENST00000462628.5_1_19:55146093-55147330:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.80316162109375	2	474.803094	947.591636	0.25384	0.00012053	-0.52462	-0.00024909	-0.27077	-0.00012856	474.80276988260175	47.27	0.63594	47.322	47.114	47.75	0.052574					53	23	3	0	0	0	0.20518	1	10705	10705		42.095	6.0504	1	729540	+		24050	21232	13697	13698	30202	30202					0.11574360785039062
LLSHPRLL	8	Unmodified	_LLSHPRLL_					0	0	0			REV__ENST00000462628.5_1_19:55146093-55147330:+|nuORF	REV__ENST00000462628.5_1_19:55146093-55147330:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.8031311035156	2	474.803094	947.591636	0.81719	0.00038801	-0.98311	-0.00046678	-0.16592	-7.8777E-05	474.80250921462175	47.303	0.66381	47.357	47.093	47.757	0.054375					49	24	3	0	0	0	0.20518	1	10725	10725		42.095	6.0504	1	697070	+		24051	21232	13697	13698	30203	30203					0.11574360785039062
LLSKRFKLS	9	Unmodified	_LLSKRFKLS_					0	0	0			REV__ENST00000382038.6_1_5:34913622-34914834:-|nuORF	REV__ENST00000382038.6_1_5:34913622-34914834:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8307495117188	2	546.350409	1090.68626	0.59728	0.00032632	0.039127	2.1377E-05	0.63641	0.0003477	546.350501698899	42.305	0.29783	42.397	42.23	42.527	0.091358					14	9	2	0	0	0	0.25066	1	9199	9199		3.9444	0.3479	1	82648	+		24052	20567	13698	13699	30204	30204					0.14454874536386342
LLSKTNTK	8	Unmodified	_LLSKTNTK_					0	0	0			REV__ENST00000409185.5_1_2:131809620-131809854:-|nuORF	REV__ENST00000409185.5_1_2:131809620-131809854:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7764587402344	2	452.776742	903.538931	-0.67311	-0.00030477	0.7152	0.00032382	0.042083	1.9054E-05	452.776988248567	34.717	0.88445	34.795	34.505	35.39	0.077381					72	31	3	0	0	0	0.39068	2	6845	6845;6890		20.454	3.5113	1	1238800	+		24053	20756	13699	13700	30205;30206	30205					0.08330357931572507
LLSLAEGAIL	10	Unmodified	_LLSLAEGAIL_					0	0	0			REV__USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	REV__USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3174133300781	2	500.307875	998.601197	0.29647	0.00014833	-1.6034	-0.00080222	-1.307	-0.00065389	500.3069388363413	57.712	0.77805	57.694	57.497	58.275	-0.0172					43	28	2	0	0	0	0.19457	1	13955	13955		41.84	0	1	682810	+		24054	16977	13700	13701	30207	30207					0.10184084279910621
LLSLAGDVLV	10	Unmodified	_LLSLAGDVLV_					0	0	0		ENSG00000061656|ENST00000374273|SPAG4;ENST00000468248.5_1_20:34204975-34205587:+|nuORF;ENST00000463973.5_1_20:34204963-34206398:+|nuORF	ENSG00000061656|ENST00000374273|SPAG4	ENSG00000061656|ENST00000374273|SPAG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.3164978027344	2	500.307875	998.601197	0.3463	0.00017325	-1.856	-0.00092859	-1.5097	-0.00075533	500.3068130207614	57.803	0.71977	57.803	57.578	58.298	0					38	25	2	0	0	0	0.16984	1	13957	13957		54.774	0	1	507170			24055	759	13701	13702	30208	30208					0.10184084279899253
LLSLLKLAF	9	Unmodified	_LLSLLKLAF_					0	0	0		nc|ENSG00000176225|Q86VV8-4|RTTN;nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-2|RTTN;ENST00000581583.1_1_18:67834153-67872894:-|nuORF;RTTN|p.I720Sfs*22|1|0.17|ENSG00000176225|chr18:70149986-70149987|-/AC|frameshift_variant	nc|ENSG00000176225|Q86VV8-4|RTTN	nc|ENSG00000176225|Q86VV8-4|RTTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2533874511719	2	509.338978	1016.6634	0.34008	0.00017322	-0.040703	-2.0732E-05	0.29938	0.00015249	509.3389784563744	72.493	0.76545	72.548	72.353	73.118	0.054504					36	27	2	0	0	0	0.25066	1	18525	18525		11.64	3.7301	1	125630			24056	6911	13702	13703	30209	30209					0.1557385541889289
LLSLLKLAF	9	Unmodified	_LLSLLKLAF_					0	0	0		nc|ENSG00000176225|Q86VV8-4|RTTN;nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-2|RTTN;ENST00000581583.1_1_18:67834153-67872894:-|nuORF;RTTN|p.I720Sfs*22|1|0.17|ENSG00000176225|chr18:70149986-70149987|-/AC|frameshift_variant	nc|ENSG00000176225|Q86VV8-4|RTTN	nc|ENSG00000176225|Q86VV8-4|RTTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8038330078125	2	509.338978	1016.6634	0.31287	0.00015936	0.018064	9.2009E-06	0.33094	0.00016856	509.3388243932753	73.397	0.79188	73.367	72.901	73.693	-0.029305					36	28	3	0	0	0	0.23783	1	18736	18736		18.135	0	1	90160			24057	6911	13702	13703	30210	30210					0.1557385541889289
LLSLLKLAF	9	Unmodified	_LLSLLKLAF_					0	0	0		nc|ENSG00000176225|Q86VV8-4|RTTN;nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-2|RTTN;ENST00000581583.1_1_18:67834153-67872894:-|nuORF;RTTN|p.I720Sfs*22|1|0.17|ENSG00000176225|chr18:70149986-70149987|-/AC|frameshift_variant	nc|ENSG00000176225|Q86VV8-4|RTTN	nc|ENSG00000176225|Q86VV8-4|RTTN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	509.338978	1016.6634	0.38903	0.00019815	0.051052	2.6003E-05	0.44008	0.00022415	509.8405406735743	72.453	1.06	72.425	72.067	73.127	-0.02816	-0.061274	4.148E-05	NaN	11.64	55	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109130			24058	6911	13702	13703							0.1557385541889289
LLSNPHTL	8	Unmodified	_LLSNPHTL_					0	0	0		ENSG00000196350|ENST00000601693|ZNF729	ENSG00000196350|ENST00000601693|ZNF729	ENSG00000196350|ENST00000601693|ZNF729	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.28955078125	2	447.75581	893.497067	0.4583	0.0002052	-1.3583	-0.0006082	-0.90004	-0.000403	447.7556709596415	45.836	0.34362	45.901	45.753	46.096	0.065048					19	11	2	0	0	0	0.33993	1	10225	10225		16.942	6.1184	1	111580			24059	7851	13703	13704	30211	30211					0.04605802243054313
LLSPRTLPR	9	Unmodified	_LLSPRTLPR_					0	0	0		ENSG00000198837|ENST00000361217|DENND4B;ENST00000485359.1_1_1:153912533-153913115:-|nuORF	ENSG00000198837|ENST00000361217|DENND4B;ENST00000485359.1_1_1:153912533-153913115:-|nuORF	ENSG00000198837|ENST00000361217|DENND4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3552856445312	2	526.832383	1051.65021	0.43705	0.00023025	-0.31386	-0.00016535	0.12319	6.4902E-05	526.8322153314792	42.855	1.1412	42.855	42.435	43.576	0					113	41	4	0	0	0	0.25066	1	9566	9566		11.64	0.81637	1	1375600			24060	8138;11089	13704	13705	30212	30212					0.12645417359499334
LLSQIWLF	8	Unmodified	_LLSQIWLF_					0	0	0			REV__ENST00000379179.7_1_13:44971575-44971809:+|nuORF	REV__ENST00000379179.7_1_13:44971575-44971809:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7765808105469	2	510.299853	1018.58515	0.26941	0.00013748	2.4162	0.001233	2.6856	0.0013705	510.3014187527003	70.117	0.39691	70.183	70.101	70.498	0.06604					16	13	2	0	0	0	0.33995	1	17744	17744		15.768	2.2603	1	75445	+		24061	20528	13705	13706	30213	30213					0.07660422833669145
LLSRDTECI	9	Unmodified	_LLSRDTECI_					0	0	0			REV__ENSG00000214414|ENST00000398290|TRIM77	REV__ENSG00000214414|ENST00000398290|TRIM77	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2681884765625	2	525.268424	1048.5223	0.76815	0.00040348	-0.30724	-0.00016138	0.46091	0.0002421	525.2680481912289	77.392	3.2663	77.392	76.448	79.714	0					187	125	4	0	0	0	0.17787	2	19930	19930;19980		26.884	1.4843	1	2034000	+		24062	19061	13706	13707	30214;30215	30214					-2.5110166916419985E-05
LLSRDTECI	9	Unmodified	_LLSRDTECI_					0	0	0			REV__ENSG00000214414|ENST00000398290|TRIM77	REV__ENSG00000214414|ENST00000398290|TRIM77	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2686767578125	2	525.268424	1048.5223	0.90007	0.00047278	-0.30862	-0.00016211	0.59145	0.00031067	525.2681093862482	77.375	2.7822	77.343	77.019	79.801	-0.031334					161	107	4	0	0	0	0.17787	2	19971	19924;19971		26.884	20.454	1	2280600	+		24063	19061	13706	13707	30216;30217	30217					-2.5110166916419985E-05
LLSREHVL	8	Unmodified	_LLSREHVL_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1;nc|ENSG00000121057|Q92667-2|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.8267822265625	2	483.790184	965.565815	0.22538	0.00010904	-1.0423	-0.00050427	-0.81696	-0.00039524	483.7901745856291	40.162	0.93512	40.162	39.669	40.604	0					65	33	3	0	0	0	0.31934	1	8499	8499		24.674	1.5255	1	378030			24064	2983	13707	13708	30218	30218					0.08165466542754984
LLSREHVL	8	Unmodified	_LLSREHVL_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1;nc|ENSG00000121057|Q92667-2|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	483.790184	965.565815	0.36398	0.00017609	-0.16622	-8.0414E-05	0.19776	9.5676E-05	483.79001197448554	39.997	0.63712	40.097	39.868	40.505	0.099407	-0.033224	5.1475E-05	NaN	24.674	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517060			24065	2983	13707	13708							0.08165466542754984
LLSTEKLTL	9	Unmodified	_LLSTEKLTL_					0	0	0		ENST00000592904.5_1_19:9524750-9525065:-|nuORF	ENST00000592904.5_1_19:9524750-9525065:-|nuORF	ENST00000592904.5_1_19:9524750-9525065:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3025817871094	2	509.313158	1016.61176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.843	1	87.841	87.341	88.341	-0.0028381								0	0	0	0.19804	1	23165	23165		23.148	2.6948	1				24066	12204	13708	13709	30219	30219					0.10412066934327413
LLSTKLDLS	9	Unmodified	_LLSTKLDLS_					0	0	0		ENST00000578137.5_1_17:61864524-61869872:+|nuORF	ENST00000578137.5_1_17:61864524-61869872:+|nuORF	ENST00000578137.5_1_17:61864524-61869872:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.9589538574219	2	495.297507	988.580462	0.29698	0.00014709	-3.3346	-0.0016516	-3.0376	-0.0015045	495.2960729739948	95.688	0.19683	95.766	95.69	95.886	0.077408					27	16	2	0	0	0	0.25706	1	25578	25578		6.7232	1.4925	1	79018			24067	12057	13709	13710	30220	30220					0.08571493900228688
LLSTLHTVL	9	Unmodified	_LLSTLHTVL_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000502799.1_1_4:843463-843892:-|nuORF	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7555847167969	2	498.808042	995.601532	0.38014	0.00018962	-0.5905	-0.00029454	-0.21035	-0.00010493	498.8079389214634	70.82	0.35752	70.881	70.659	71.017	0.060783					19	12	2	0	0	0	0.24913	1	17983	17983		12.532	0	1	131280			24068	7088	13710	13711	30221	30221					0.10355503999744542
LLSTRESTL	9	Unmodified	_LLSTRESTL_					0	0	0		ENST00000396161.9_2_19:58131980-58132310:+|nuORF;ENST00000343280.8_1_19:57984577-57985306:-|nuORF	ENST00000396161.9_2_19:58131980-58132310:+|nuORF	ENST00000396161.9_2_19:58131980-58132310:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.80377197265625	2	510.290214	1018.56587	0.52241	0.00026658	-1.3499	-0.00068884	-0.82749	-0.00042226	510.79075276874835	78.528	0.2952	78.586	78.414	78.71	0.058151					20	10	3	0	0	0	0.24688	1	20324	20324		14.838	0.93222	1	62160			24069	9542	13711	13712	30222	30222					0.057334217520860875
LLSTRESTL	9	Unmodified	_LLSTRESTL_					0	0	0		ENST00000396161.9_2_19:58131980-58132310:+|nuORF;ENST00000343280.8_1_19:57984577-57985306:-|nuORF	ENST00000396161.9_2_19:58131980-58132310:+|nuORF	ENST00000396161.9_2_19:58131980-58132310:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	510.290214	1018.56587	0.61804	0.00031538	2.9228	0.0014915	3.5408	0.0018068	510.2914459812195	78.81	0.22177	78.779	78.601	78.822	-0.030434	0.096547	0.0010666	NaN	10.074	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49868			24070	9542	13711	13712							0.057334217520860875
LLSTTSHLF	9	Unmodified	_LLSTTSHLF_					0	0	0		L1PA6_dup546|chr2:49227587-49231532:-|3.544250815784157|0.2927699401366612|3.6|541.0|45|2|sense;L1PA7_dup4105|chr5:32794707-32799584:+|1.4734764400816625|0.3370285026521366|2.13|528.0|117|3|sense	L1PA6_dup546|chr2:49227587-49231532:-|3.544250815784157|0.2927699401366612|3.6|541.0|45|2|sense	L1PA6_dup546|chr2:49227587-49231532:-|3.544250815784157|0.2927699401366612|3.6|541.0|45|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.78216552734375	2	509.782025	1017.5495	0.3894	0.00019851	-0.74949	-0.00038208	-0.36009	-0.00018357	509.781633970419	82.147	0.71063	82.147	81.968	82.679	0					33	25	2	0	0	0	0.30166	1	21484	21484		8.5933	0	1	462430			24071	12491	13712	13713	30223	30223					0.04142340585997317
LLSTVDHYL	9	Unmodified	_LLSTVDHYL_					0	0	0			REV__ENSG00000144357|ENST00000272793|UBR3	REV__ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3218994140625	2	530.787307	1059.56006	0.51361	0.00027262	-0.023588	-1.252E-05	0.49002	0.0002601	530.7865407652959	68.743	1.0334	68.723	68.458	69.492	-0.019157					59	36	3	0	0	0	0.21905	1	17312	17312		16.942	1.0951	1	263710	+		24072	16229	13713	13714	30224	30224					0.03266323240427482
LLSTVTGTIAM	11	Unmodified	_LLSTVTGTIAM_					0	0	0		ENSG00000280236|ENST00000642051|OR12D2;nc|ENSG00000251608|P0DN82|OR12D1	ENSG00000280236|ENST00000642051|OR12D2	ENSG00000280236|ENST00000642051|OR12D2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.810791015625	2	553.809925	1105.6053	0.44122	0.00024435	0.76034	0.00042108	1.2016	0.00066544	553.8102568193563	36.269	1.0143	36.269	35.773	36.787	0					78	36	3	0	0	0	0.38623	1	7363	7363		13.042	1.5478	1	1467400			24073	8755	13714	13715	30225	30225					0.05671805711313027
LLSYLWKEW	9	Unmodified	_LLSYLWKEW_					0	0	0		ENST00000295802.8_1_2:85578813-85578846:-|nuORF	ENST00000295802.8_1_2:85578813-85578846:-|nuORF	ENST00000295802.8_1_2:85578813-85578846:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.92633056640625	3	413.225375	1236.6543	-0.17365	-7.1755E-05	1.6027	0.00066229	1.4291	0.00059053	413.2261244527383	25.574	0.090094	25.574	25.533	25.623	0					4	2	2	0	0	0	0.26099	1	4093	4093		2.9952	0.36401	1	24942			24074	9175	13715	13716	30226	30226					0.04543462062542858
LLTCMSCTF	9	Unmodified	_LLTCMSCTF_					0	0	0		ENST00000456950.6_1_17:40821512-40828020:-|nuORF;nc|ENSG00000068137|Q7Z736-3|PLEKHH3;nc|ENSG00000068137|Q7Z736-2|PLEKHH3;ENST00000591490.5_1_17:40821740-40828722:-|nuORF;ENSG00000068137|ENST00000591022|PLEKHH3;nc|ENSG00000068137|Q7Z736-4|PLEKHH3	ENST00000456950.6_1_17:40821512-40828020:-|nuORF	ENST00000456950.6_1_17:40821512-40828020:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.80377197265625	2	509.723949	1017.43335	0.20074	0.00010232	0.44249	0.00022555	0.64323	0.00032787	509.7241707688568	75.477	0.39096	75.477	75.291	75.682	0					19	13	2	0	0	0	0.25811	1	19423	19423		2.3027	0	1	106690			24075	878	13716	13717	30227	30227					-0.07467385572226704
LLTFRSAP	8	Unmodified	_LLTFRSAP_					0	0	0			REV__ENSG00000283093|ENST00000634648|CENPVL2	REV__ENSG00000283093|ENST00000634648|CENPVL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.7661437988281	2	452.766178	903.517802	-0.19092	-8.6442E-05	0.12623	5.715E-05	-0.064694	-2.9291E-05	452.7661625716791	39.304	0.90709	39.304	38.844	39.751	0					63	32	3	0	0	0	0.39068	1	8342	8342		20.454	1.0146	1	813400	+		24076	19106	13717	13718	30228	30228					0.06218392622713509
LLTFSHELL	9	Unmodified	_LLTFSHELL_					0	0	0			REV__ENSG00000059691|ENST00000263985|GATB	REV__ENSG00000059691|ENST00000263985|GATB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2930297851562	2	536.8055	1071.59645	0.4139	0.00022219	0.27353	0.00014683	0.68744	0.00036902	536.8056379876954	67.64	1.0763	67.624	67.323	68.399	-0.016296					96	37	4	0	0	0	0.17787	1	17136	17136		26.884	2.8631	1	2651800	+		24077	13616	13718	13719	30229	30229					0.06351200137146407
LLTGTECL	8	Unmodified	_LLTGTECL_					0	0	0		ENST00000402364.1_1_13:23912216-23912294:-|nuORF	ENST00000402364.1_1_13:23912216-23912294:-|nuORF	ENST00000402364.1_1_13:23912216-23912294:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.9225158691406	2	425.222954	848.431355	0.088294	3.7544E-05	-0.20591	-8.7558E-05	-0.11762	-5.0013E-05	425.2229130529341	42.131	0.3757	42.222	42.037	42.413	0.091358					21	12	2	0	0	0	0.34185	1	9173	9173		10.183	0	1	197510			24078	10194	13719	13720	30230	30230					0.00107645005834911
LLTIIHGASA	10	Unmodified	_LLTIIHGASA_					0	0	0			REV__ENSG00000170381|ENST00000643230|SEMA3E	REV__ENSG00000170381|ENST00000643230|SEMA3E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7677917480469	2	498.297842	994.581131	0.38132	0.00019001	-0.14589	-7.2697E-05	0.23543	0.00011731	498.2976771704177	57.957	0.47405	57.957	57.768	58.243	0					24	16	2	0	0	0	0.31629	1	14101	14101		10.074	2.7847	1	180260	+		24079	17578	13720	13721	30231	30231					0.08362333339948691
LLTLAALVE	9	Unmodified	_LLTLAALVE_					0	0	0			REV__ENST00000296873.11_1_5:132093392-132093830:-|nuORF	REV__ENST00000296873.11_1_5:132093392-132093830:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.7969055175781	2	471.797143	941.579734	0.77292	0.00036466	-0.61603	-0.00029064	0.15689	7.4021E-05	471.796743788764	78.082	0.54188	78.051	77.759	78.301	-0.030434					43	19	3	0	0	0	0.22188	2	20240	20113;20240		20.454	0	1	280670	+		24080	19801	13721	13722	30232;30233	30233					0.10660699251184269
LLTLDDSP	8	Unmodified	_LLTLDDSP_					0	0	0			REV__ENSG00000090674|ENST00000264079|MCOLN1	REV__ENSG00000090674|ENST00000264079|MCOLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2674560546875	2	437.231833	872.449113	-0.074484	-3.2567E-05	2.6023	0.0011378	2.5278	0.0011052	437.2330187907993	46.284	0.40627	46.349	46.121	46.527	0.065048					21	14	2	0	0	0	0.34185	1	10453	10453		2.5775	0	1	370060	+		24081	14048	13722	13723	30234	30234					0.007786835323372543
LLTLGLVGP	9	Unmodified	_LLTLGLVGP_					0	0	0		ENST00000474057.5_2_14:23817461-23821194:-|nuORF;nc|ENSG00000092096|Q8WUG5-3|SLC22A17;ENST00000557699.5_1_14:23818379-23821759:-|nuORF;ENSG00000092096|ENST00000354772|SLC22A17;nc|ENSG00000092096|Q8WUG5|SLC22A17	ENST00000474057.5_2_14:23817461-23821194:-|nuORF	ENST00000474057.5_2_14:23817461-23821194:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2581787109375	2	441.786579	881.558604	0.15564	6.8759E-05	-0.58752	-0.00025956	-0.43188	-0.0001908	441.78616723948494	58.072	1.2579	58.158	57.92	59.178	0.085617					70	44	3	0	0	0	0.25291	1	14229	14229		9.3474	0	1	472880			24082	1418	13723	13724	30235	30235					0.11308733942325944
LLTLGLVGP	9	Unmodified	_LLTLGLVGP_					0	0	0		ENST00000474057.5_2_14:23817461-23821194:-|nuORF;nc|ENSG00000092096|Q8WUG5-3|SLC22A17;ENST00000557699.5_1_14:23818379-23821759:-|nuORF;ENSG00000092096|ENST00000354772|SLC22A17;nc|ENSG00000092096|Q8WUG5|SLC22A17	ENST00000474057.5_2_14:23817461-23821194:-|nuORF	ENST00000474057.5_2_14:23817461-23821194:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2579650878906	2	441.786579	881.558604	0.33855	0.00014957	-2.719	-0.0012012	-2.3804	-0.0010516	441.78540161873235	58.75	0.121	58.736	58.656	58.777	-0.014267					5	3	2	0	0	0	0.25291	1	14240	14240		9.3474	0	1	98044			24083	1418	13723	13724	30236	30236					0.11308733942325944
LLTLGLVGP	9	Unmodified	_LLTLGLVGP_					0	0	0		ENST00000474057.5_2_14:23817461-23821194:-|nuORF;nc|ENSG00000092096|Q8WUG5-3|SLC22A17;ENST00000557699.5_1_14:23818379-23821759:-|nuORF;ENSG00000092096|ENST00000354772|SLC22A17;nc|ENSG00000092096|Q8WUG5|SLC22A17	ENST00000474057.5_2_14:23817461-23821194:-|nuORF	ENST00000474057.5_2_14:23817461-23821194:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	441.786579	881.558604	0.45812	0.00020239	-1.1096	-0.00049023	-0.65153	-0.00028784	441.78597053777406	58.151	0.72678	58.133	57.901	58.628	-0.0172	-0.039276	-0.00027391	NaN	9.3474	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	433450			24084	1418	13723	13724							0.11308733942325944
LLTLLGPPK	9	Unmodified	_LLTLLGPPK_					0	0	0			REV__ENST00000569326.2_1_8:145724500-145725055:-|nuORF	REV__ENST00000569326.2_1_8:145724500-145725055:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.31549072265625	2	476.315503	950.616454	-0.14063	-6.6985E-05	0.088277	4.2048E-05	-0.052354	-2.4937E-05	476.3155618962905	59.868	0.50277	59.868	59.533	60.035	0					29	17	2	0	0	0	0.25314	1	14580	14580		15.847	1.0089	1	516170	+		24085	22403	13724	13725	30237	30237					0.13916995867759852
LLTLLGPPK	9	Unmodified	_LLTLLGPPK_					0	0	0			REV__ENST00000569326.2_1_8:145724500-145725055:-|nuORF	REV__ENST00000569326.2_1_8:145724500-145725055:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.3155212402344	2	476.315503	950.616454	0.26551	0.00012647	-0.23221	-0.0001106	0.033306	1.5864E-05	476.31531818241683	59.748	0.62466	59.737	59.372	59.997	-0.011486					35	21	2	0	0	0	0.28128	1	14577	14577		11.64	0	1	455460	+		24086	22403	13724	13725	30238	30238					0.13916995867759852
LLTLSDKPQIK	11	Unmodified	_LLTLSDKPQIK_					0	0	0			REV__ENSG00000151687|ENST00000684021|ANKAR	REV__ENSG00000151687|ENST00000684021|ANKAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.2590637207031	3	419.258856	1254.75474	-0.081136	-3.4017E-05	0.46123	0.00019337	0.38009	0.00015936	419.25907538025564	18.517	0.49607	18.399	18.117	18.614	-0.11739					35	16	3	0	0	0	0.32017	1	1964	1964		12.228	0.70971	1	118940	+		24087	16549	13725	13726	30239	30239					0.13755074325536043
LLTLSDKPQIK	11	Unmodified	_LLTLSDKPQIK_					0	0	0			REV__ENSG00000151687|ENST00000684021|ANKAR	REV__ENSG00000151687|ENST00000684021|ANKAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.593505859375	3	419.258856	1254.75474	-0.24061	-0.00010088	0.93389	0.00039154	0.69328	0.00029066	419.2592173528451	18.537	0.56107	18.479	18.227	18.788	-0.058174					42	19	3	0	0	0	0.36257	1	1963	1963		9.2438	0	1	147030	+		24088	16549	13725	13726	30240	30240					0.13755074325536043
LLTLSDKPQIK	11	Unmodified	_LLTLSDKPQIK_					0	0	0			REV__ENSG00000151687|ENST00000684021|ANKAR	REV__ENSG00000151687|ENST00000684021|ANKAR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	419.258856	1254.75474	-0.17813	-7.4681E-05	0.80171	0.00033612	0.62358	0.00026144	419.25919117147333	18.378	0.54515	18.378	18.1	18.646	0	-0.040435	7.9617E-05	NaN	12.228	47	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91575	+		24089	16549	13725	13726							0.13755074325536043
LLTLSDKPQIK	11	Unmodified	_LLTLSDKPQIK_					0	0	0			REV__ENSG00000151687|ENST00000684021|ANKAR	REV__ENSG00000151687|ENST00000684021|ANKAR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	419.258856	1254.75474	-0.081136	-3.4017E-05	0.46123	0.00019337	0.38009	0.00015936	419.25907538025564	18.517	0.49607	18.399	18.117	18.614	-0.11739	-0.01964	-0.00034863	NaN	12.228	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118940	+		24090	16549	13725	13726							0.13755074325536043
LLTLSDKPQIK	11	Unmodified	_LLTLSDKPQIK_					0	0	0			REV__ENSG00000151687|ENST00000684021|ANKAR	REV__ENSG00000151687|ENST00000684021|ANKAR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	419.258856	1254.75474	-0.24061	-0.00010088	0.93389	0.00039154	0.69328	0.00029066	419.2592173528451	18.537	0.56107	18.479	18.227	18.788	-0.058174	0.060075	0.00024587	NaN	12.228	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147030	+		24091	16549	13725	13726							0.13755074325536043
LLTNSFPFFE	10	Unmodified	_LLTNSFPFFE_					0	0	0			REV__ENST00000452556.5_1_2:214162070-215102915:+|nuORF	REV__ENST00000452556.5_1_2:214162070-215102915:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.8983459472656	3	405.541252	1213.60193	-0.13756	-5.5784E-05	-4.378	-0.0017755	-4.5156	-0.0018313	405.53955660861436	31.195	0.81211	31.236	30.747	31.559	0.040991					69	29	3	0	0	0	0.31473	1	5892	5892		13.615	6.5131	1	261520	+		24092	16234	13726	13727	30241	30241					0.0036687892895770347
LLTPGLQNSL	10	Unmodified	_LLTPGLQNSL_					0	0	0		ENST00000543026.5_1_12:31242773-31246356:+|nuORF	ENST00000543026.5_1_12:31242773-31246356:+|nuORF	ENST00000543026.5_1_12:31242773-31246356:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7062377929688	2	528.308406	1054.60226	0.46189	0.00024402	-0.70296	-0.00037138	-0.24107	-0.00012736	528.307886057848	62.762	0.61434	62.754	62.49	63.104	-0.0085526					52	22	3	0	0	0	0.31838	1	15591	15591		7.609	7.609	1	533100			24093	11738	13727	13728	30242	30242					0.07714298648807016
LLTPPRPR	8	Unmodified	_LLTPPRPR_					0	0	0			REV__ENST00000475415.5_1_7:2414943-2418434:+|nuORF	REV__ENST00000475415.5_1_7:2414943-2418434:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.30084228515625	2	475.300719	948.586885	0.20651	9.8153E-05	0.095669	4.5471E-05	0.30218	0.00014362	475.3007078962242	32.872	1.81	32.926	32.277	34.087	0.054371					158	65	4	0	0	0	0.33441	1	6313	6313		26.884	0	1	5422500	+		24094	14512	13728	13729	30243	30243					0.11053476642280202
LLTPQGIRREF	11	Unmodified	_LLTPQGIRREF_					0	0	0			REV__ENSG00000106992|ENST00000644144|AK1	REV__ENSG00000106992|ENST00000644144|AK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.2794189453125	3	443.9261	1328.75647	0.29775	0.00013218	-0.45641	-0.00020261	-0.15866	-7.0432E-05	443.92594417836597	32.615	1.127	32.67	32.157	33.284	0.055309					119	40	4	0	0	0	0.33182	1	6377	6377		5.4027	2.9679	1	2187300	+		24095	14540	13729	13730	30244	30244					0.10524128134170496
LLTPRRTRW	9	Unmodified	_LLTPRRTRW_					0	0	0		ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.8634033203125	2	599.862006	1197.70946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.079	1	11.983	11.483	12.483	-0.096607								0	0	0	0.264	1	22	22		1.8442	0.36234	1				24096	6318	13730	13731	30245	30245					0.11851313373699668
LLTPRWQL	8	Unmodified	_LLTPRWQL_					0	0	0		ENSG00000179271|ENST00000316939|GADD45GIP1	ENSG00000179271|ENST00000316939|GADD45GIP1	ENSG00000179271|ENST00000316939|GADD45GIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8092651367188	2	513.808377	1025.6022	0.2821	0.00014494	1.1582	0.0005951	1.4403	0.00074005	513.8085049927058	42.312	0.66298	42.397	41.876	42.539	0.085197					53	23	3	0	0	0	0.41087	1	9172	9172		18.146	5.6148	1	2700600			24097	7112	13731	13732	30246	30246					0.09042343439477918
LLTPRWQL	8	Unmodified	_LLTPRWQL_					0	0	0		ENSG00000179271|ENST00000316939|GADD45GIP1	ENSG00000179271|ENST00000316939|GADD45GIP1	ENSG00000179271|ENST00000316939|GADD45GIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8094482421875	2	513.808377	1025.6022	0.30543	0.00015693	1.2051	0.0006192	1.5106	0.00077613	513.8087084249012	42.219	0.43337	42.31	42.007	42.441	0.091362					27	14	2	0	0	0	0.42894	1	9145	9145		13.042	0.51092	1	2599000			24098	7112	13731	13732	30247	30247					0.09042343439477918
LLTPSPVF	8	Unmodified	_LLTPSPVF_					0	0	0		ENST00000489408.1_1_3:32023272-32027845:+|nuORF	ENST00000489408.1_1_3:32023272-32027845:+|nuORF	ENST00000489408.1_1_3:32023272-32027845:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.25775146484375	2	437.257654	872.500755	0.16281	7.1192E-05	0.17271	7.5517E-05	0.33552	0.00014671	437.2577503072344	73.011	0.63185	72.982	72.684	73.315	-0.029297					50	22	3	0	0	0	0.42758	1	18671	18671		13.508	0	1	366680			24099	11148	13732	13733	30248	30248					0.059404720169027314
LLTRTRPDSEL	11	Unmodified	_LLTRTRPDSEL_					0	0	0			REV__nc|ENSG00000168439|P31948-2|STIP1	REV__nc|ENSG00000168439|P31948-2|STIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7798156738281	3	434.245498	1299.71466	0.23595	0.00010246	0.14644	6.3591E-05	0.38239	0.00016605	434.24512599033454	32.436	0.9648	32.491	32.126	33.091	0.055309					143	34	7	0	0	0	0.3331	1	6099	6099		2.2527	0.51045	1	813540	+		24100	17460	13733	13734	30249	30249					0.07679527654977392
LLTRTRPDSEL	11	Unmodified	_LLTRTRPDSEL_					0	0	0			REV__nc|ENSG00000168439|P31948-2|STIP1	REV__nc|ENSG00000168439|P31948-2|STIP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	434.245498	1299.71466	0.12939	5.6186E-05	0.44614	0.00019374	0.57553	0.00024992	434.24543819879676	32.551	0.89417	32.551	32.171	33.065	0	0.021139	8.4457E-05	NaN	2.2527	115	31	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	707280	+		24101	17460	13733	13734							0.07679527654977392
LLTRTRPDSEL	11	Unmodified	_LLTRTRPDSEL_					0	0	0			REV__nc|ENSG00000168439|P31948-2|STIP1	REV__nc|ENSG00000168439|P31948-2|STIP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	434.245498	1299.71466	-0.047816	-2.0764E-05	0.42131	0.00018295	0.3735	0.00016219	434.2454054625435	32.492	0.98319	32.547	32.136	33.119	0.054375	0.017132	5.2111E-05	NaN	2.2527	117	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	825590	+		24102	17460	13733	13734							0.07679527654977392
LLTSREEGD	9	Unmodified	_LLTSREEGD_					0	0	0		ENST00000309964.8_1_4:56301513-56301576:-|nuORF	ENST00000309964.8_1_4:56301513-56301576:-|nuORF	ENST00000309964.8_1_4:56301513-56301576:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8039855957031	2	510.253828	1018.4931	0.16872	8.6089E-05	0.10151	5.1795E-05	0.27023	0.00013788	510.25465609437373	76.89	0.98058	76.946	76.425	77.405	0.055412					44	34	2	0	0	0	0.24311	1	19704	19704		7.2892	4.9865	1	124510			24103	9308	13734	13735	30250	30250					-0.015403320413156507
LLTTLPTSR	9	Unmodified	_LLTTLPTSR_					0	0	0			REV__nc|ENSG00000169876|Q685J3-2|MUC17	REV__nc|ENSG00000169876|Q685J3-2|MUC17	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2916259765625	2	501.303124	1000.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.9	1	74.952	74.452	75.452	0.052361								0	0	0	0.20639	1	19208	19208		20.454	0	1		+		24104	17546	13735	13736	30251	30251					0.09142315994381534
LLTTWTSL	8	Unmodified	_LLTTWTSL_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7554931640625	2	467.765843	933.517133	0.14025	6.5605E-05	0.86711	0.00040561	1.0074	0.00047121	467.76617805392715	62.731	0.6038	62.827	62.544	63.148	0.095722					41	21	3	0	0	0	0.38703	1	15519	15519		20.871	2.7362	1	298230			24105	8733	13736	13737	30252	30252					0.04771553183002197
LLTWPYIL	8	Unmodified	_LLTWPYIL_					0	0	0		ENSG00000139133|ENST00000266483|ALG10;ALG10|p.Q290Nfs*29|1|0.19|ENSG00000139133|chr12:34026361-34026361|C/-|frameshift_variant	ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7235412597656	2	509.802229	1017.5899	0.46983	0.00023952	2.7695	0.0014119	3.2393	0.0016514	509.80315165125637	85.566	0.41972	85.557	85.224	85.644	-0.0090027					26	15	2	0	0	0	0.32778	1	22408	22408		20.871	0	1	96306			24106	4208	13737	13738	30253	30253					0.08181306976428004
LLVAKTLLF	9	Unmodified	_LLVAKTLLF_					0	0	0		ENST00000216068.8_1_22:39178800-39190165:-|nuORF	ENST00000216068.8_1_22:39178800-39190165:-|nuORF	ENST00000216068.8_1_22:39178800-39190165:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7765808105469	2	509.338978	1016.6634	0.29767	0.00015162	0.72198	0.00036773	1.0197	0.00051935	509.33918279324797	70.368	0.83234	70.428	70.096	70.928	0.060783					52	29	3	0	0	0	0.19839	1	17744	17744		28.487	0	1	171100			24107	8812	13738	13739	30254	30254					0.1557385541890426
LLVCRRKLLL	10	Unmodified	_LLVCRRKLLL_					0	0	0			REV__ENST00000416221.5_1_1:231664187-231664235:-|nuORF	REV__ENST00000416221.5_1_1:231664187-231664235:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.6078186035156	3	409.609166	1225.80567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.295	1	57.38	56.88	57.88	0.085621								0	0	0	0.35461	1	13814	13814		12.873	4.4283	1		+		24108	20816	13739	13740	30255	30255					0.20179744889424
LLVCWLVVTV	10	Unmodified	_LLVCWLVVTV_					0	0	0		ENSG00000174792|ENST00000311623|ODAPH;nc|ENSG00000174792|Q17RF5-2|ODAPH	ENSG00000174792|ENST00000311623|ODAPH	ENSG00000174792|ENST00000311623|ODAPH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.84326171875	2	572.843571	1143.67259	-0.10766	-6.1675E-05	-0.39369	-0.00022552	-0.50136	-0.0002872	572.8433707533508	18.506	0.53634	18.448	18.227	18.763	-0.058174					26	18	2	0	0	0	0.39745	1	1980	1980		3.9444	0.3479	1	82881			24109	6816	13740	13741	30256	30256					0.10649880712912818
LLVDTFLFF	9	Unmodified	_LLVDTFLFF_					0	0	0			REV__nc|ENSG00000137135|Q8N4T4-2|ARHGEF39	REV__nc|ENSG00000137135|Q8N4T4-2|ARHGEF39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2679443359375	2	557.812793	1113.61103	0.23479	0.00013097	-3.3789	-0.0018848	-3.1441	-0.0017538	557.810743912333	57.109	0.28279	57.09	56.944	57.227	-0.019077					12	9	2	0	0	0	0.24913	1	13710	13710		12.532	3.9383	1	119670	+		24110	15846	13741	13742	30257	30257					0.05877272285283652
LLVESPPANG	10	Unmodified	_LLVESPPANG_					0	0	0			REV__ENST00000476634.1_1_12:8085578-8088630:-|nuORF	REV__ENST00000476634.1_1_12:8085578-8088630:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3095397949219	2	498.771657	995.528761	0.41355	0.00020627	-0.7663	-0.00038221	-0.35275	-0.00017594	498.77096258803846	90.453	0.5219	90.544	90.357	90.879	0.090668					61	42	2	0	0	0	0.32033	1	24030	24030		3.5965	0.70727	1	71534	+		24111	13618	13742	13743	30258	30258					0.03081750206331435
LLVFFCLEK	9	Unmodified	_LLVFFCLEK_					0	0	0		ENST00000359152.9_1_11:85405646-85405715:-|nuORF	ENST00000359152.9_1_11:85405646-85405715:-|nuORF	ENST00000359152.9_1_11:85405646-85405715:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3141479492188	2	556.314646	1110.61474	-0.01678	-9.3352E-06	-0.62988	-0.00035041	-0.64666	-0.00035975	556.3141551326715	14.177	0.31175	14.072	13.961	14.273	-0.10466					18	10	2	0	0	0	0.25989	1	668	668		14.838	1.2234	1	137820			24112	9660	13743	13744	30259	30259					0.0638561878749897
LLVHCIYCI	9	Unmodified	_LLVHCIYCI_					0	0	0			REV__ENST00000471736.5_1_4:158142110-158255356:+|nuORF	REV__ENST00000471736.5_1_4:158142110-158255356:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2902221679688	2	538.785198	1075.55584	0.90041	0.00048513	0.31112	0.00016763	1.2115	0.00065276	538.7853314285913	56.056	1.5957	56.127	55.854	57.45	0.070885					110	58	3	0	0	0	0.22431	1	13837	13837		14.582	4.5078	1	4131400	+		24113	21359	13744	13745	30260	30260					0.02108819221507474
LLVHCIYCI	9	Unmodified	_LLVHCIYCI_					0	0	0			REV__ENST00000471736.5_1_4:158142110-158255356:+|nuORF	REV__ENST00000471736.5_1_4:158142110-158255356:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	538.785198	1075.55584	1.0852	0.00058469	0.43164	0.00023256	1.5168	0.00081725	538.7855225396409	56.189	1.5574	56.17	55.884	57.441	-0.019081	0.021415	8.6017E-05	NaN	9.3474	99	56	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2882800	+		24114	21359	13744	13745							0.02108819221507474
LLVIHLLSH	9	Unmodified	_LLVIHLLSH_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2981567382812	2	522.831852	1043.64915	0.51991	0.00027183	-0.47493	-0.00024831	0.044983	2.3518E-05	522.8313925701643	52.481	0.24598	52.531	52.465	52.711	0.050575					13	8	2	0	0	0	0.24739	1	12351	12351		4.756	0	1	198390			24115	12726	13745	13746	30261	30261					0.12907202990618316
LLVKNKITL	9	Unmodified	_LLVKNKITL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant;ENST00000560020.1_1_15:91017736-91017973:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2681884765625	2	521.35516	1040.69577	0.30671	0.0001599	-0.27047	-0.00014101	0.036239	1.8894E-05	521.3548623274651	40.71	0.37349	40.809	40.617	40.99	0.099407					19	13	2	0	0	0	0.24471	1	8667	8667		17.113	2.2746	1	199770			24116	4321	13746	13747	30262	30262					0.17704642821900052
LLVKNKITL	9	Unmodified	_LLVKNKITL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant;ENST00000560020.1_1_15:91017736-91017973:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	521.35516	1040.69577	0.51454	0.00026826	-0.53031	-0.00027648	-0.015772	-8.2228E-06	521.3548233130443	40.754	0.31658	40.847	40.637	40.954	0.09267	0.018912	-9.4727E-05	NaN	17.113	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179450			24117	4321	13746	13747							0.17704642821900052
LLVLAMLMF	9	Unmodified	_LLVLAMLMF_					0	0	0			REV__nc|ENSG00000162897|Q8WWV6|FCAMR	REV__nc|ENSG00000162897|Q8WWV6|FCAMR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7035522460938	2	525.808142	1049.60173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.988	1	78.958	78.458	79.458	-0.030434								0	0	0	0.25352	1	20445	20445		5.2307	2.3415	1		+		24118	17020	13747	13748	30263	30263					0.07891464403746795
LLVLAWVVL	9	Unmodified	_LLVLAWVVL_					0	0	0			REV__nc|ENSG00000204178|Q8N5G2-3|MACO1	REV__nc|ENSG00000204178|Q8N5G2-3|MACO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2692260742188	2	513.341521	1024.66849	0.3187	0.0001636	0.411	0.00021098	0.72971	0.00037459	513.3415771300131	72.323	0.401	72.296	72.143	72.544	-0.027275					19	13	2	0	0	0	0.22431	1	18416	18416		14.582	0	1	98941	+		24119	18923	13748	13749	30264	30264					0.15714159281515094
LLVLPKLQ	8	Unmodified	_LLVLPKLQ_					0	0	0		ENST00000281017.7_2_2:672843-675610:-|nuORF	ENST00000281017.7_2_2:672843-675610:-|nuORF	ENST00000281017.7_2_2:672843-675610:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.8260192871094	2	462.318046	922.621539	-0.023438	-1.0836E-05	0.20816	9.6235E-05	0.18472	8.5399E-05	462.3180045995134	67.139	0.56876	67.139	66.881	67.45	0					38	19	3	0	0	0	0.34046	1	16782	16782		14.582	0	1	234590			24120	9116	13749	13750	30265	30265					0.15713299730361996
LLVMHLLGV	9	Unmodified	_LLVMHLLGV_					0	0	0			REV__ENSG00000123353|ENST00000243045|ORMDL2	REV__ENSG00000123353|ENST00000243045|ORMDL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2794189453125	2	497.809531	993.604509	0.41809	0.00020813	0.063311	3.1517E-05	0.4814	0.00023964	497.8095608232701	64.784	0.31436	64.774	64.634	64.948	-0.0095367					14	10	2	0	0	0	0.24542	1	16090	16090		14.582	0	1	146830	+		24121	15186	13750	13751	30266	30266					0.10745055852930818
LLVMHLLGV	9	Unmodified	_LLVMHLLGV_					0	0	0			REV__ENSG00000123353|ENST00000243045|ORMDL2	REV__ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	497.809531	993.604509	0.50399	0.00025089	-0.66644	-0.00033176	-0.16245	-8.0871E-05	497.8093587302129	64.811	0.39674	64.811	64.563	64.96	0	0.017206	-0.00020659	NaN	14.582	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139360	+		24122	15186	13750	13751							0.10745055852930818
LLVMHLLGV	9	Unmodified	_LLVMHLLGV_					0	0	0			REV__ENSG00000123353|ENST00000243045|ORMDL2	REV__ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.809531	993.604509	0.55272	0.00027515	-0.3242	-0.00016139	0.22853	0.00011376	497.8095200390989	64.703	0.40829	64.796	64.554	64.962	0.09288	0.0021749	0.00013416	NaN	14.582	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160490	+		24123	15186	13750	13751							0.10745055852930818
LLVMLDRVAKS	11	Unmodified	_LLVMLDRVAKS_					0	0	0			REV__ENST00000518337.1_1_8:74128289-74128592:-|nuORF	REV__ENST00000518337.1_1_8:74128289-74128592:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.8721923828125	2	622.873391	1243.73223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.486	1	41.576	41.076	42.076	0.090252								0	0	0	0.37796	1	8947	8947		2.086	0	1		+		24124	21864	13751	13752	30267	30267					0.12011151656292895
LLVPQTEL	8	Unmodified	_LLVPQTEL_					0	0	0		ENST00000357992.8_1_1:205584017-205584101:-|nuORF	ENST00000357992.8_1_1:205584017-205584101:-|nuORF	ENST00000357992.8_1_1:205584017-205584101:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2637634277344	2	456.773668	911.532783	0.060926	2.7829E-05	-0.67984	-0.00031053	-0.61892	-0.00028271	456.7737135511081	69.994	0.67366	69.994	69.732	70.406	0					56	24	4	0	0	0	0.34046	1	17638	17638		14.582	0	1	673880			24125	9639	13752	13753	30268	30268					0.07347839700048553
LLVPQTEL	8	Unmodified	_LLVPQTEL_					0	0	0		ENST00000357992.8_1_1:205584017-205584101:-|nuORF	ENST00000357992.8_1_1:205584017-205584101:-|nuORF	ENST00000357992.8_1_1:205584017-205584101:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2640075683594	2	456.773668	911.532783	0.055845	2.5509E-05	-1.7773	-0.00081184	-1.7215	-0.00078633	456.77367455075574	69.889	0.86655	69.955	69.518	70.384	0.066048					91	30	4	0	0	0	0.45169	1	17593	17593		5.2307	0	1	607980			24126	9639	13752	13753	30269	30269					0.07347839700048553
LLVPVICQI	9	Unmodified	_LLVPVICQI_					0	0	0		ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0-3|SCARB1;nc|ENSG00000073060|Q8WTV0-4|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF;nc|ENSG00000073060|Q8WTV0-5|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1	ENSG00000073060|ENST00000261693|SCARB1	ENSG00000073060|ENST00000261693|SCARB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.32391357421875	2	499.309364	996.604174	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.848	1	56.848	56.348	57.348	0								0	0	0	0.19804	1	13679	13679		23.148	2.6948	1				24127	996	13753	13754	30270	30270					0.10573636133051423
LLVQEARLF	9	Unmodified	_LLVQEARLF_					0	0	0			REV__ENSG00000173212|ENST00000369500|MAB21L3	REV__ENSG00000173212|ENST00000369500|MAB21L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.8103637695312	2	544.826766	1087.63898	0.74309	0.00040486	-0.99441	-0.00054178	-0.25132	-0.00013693	544.8262955354087	73.096	0.30788	73.067	72.846	73.153	-0.029305					12	10	2	0	0	0	0.25417	1	18591	18591		8.5933	1.304	1	49693	+		24128	17769	13754	13755	30271	30271					0.09866595265361866
LLVRAVEVH	9	Unmodified	_LLVRAVEVH_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3170166015625	2	518.319109	1034.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.378	1	75.347	74.847	75.847	-0.031487								0	0	0	0.24311	1	19349	19349		8.5933	0	1		+		24129	15522	13755	13756	30272	30272					0.10773728468188892
LLVRGLTTL	9	Unmodified	_LLVRGLTTL_					0	0	0		ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-3|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.8053283691406	2	493.32386	984.633166	0.42627	0.00021029	0.27613	0.00013622	0.70239	0.00034651	493.32423367440583	63.332	0.8163	63.332	62.93	63.746	0					61	29	4	0	0	0	0.21905	1	15734	15734		16.942	4.4107	1	419450			24130	2443	13756	13757	30273	30273					0.14023496753691234
LLVRGLTTL	9	Unmodified	_LLVRGLTTL_					0	0	0		ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-3|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.805419921875	2	493.32386	984.633166	0.46796	0.00023086	0.5341	0.00026349	1.0021	0.00049434	493.32432664859755	63.173	0.66371	63.269	62.957	63.621	0.095722					58	23	4	0	0	0	0.24311	1	15670	15670		16.942	4.4107	1	438910			24131	2443	13756	13757	30274	30274					0.14023496753691234
LLVSDKRLL	9	Unmodified	_LLVSDKRLL_					0	0	0			REV__ENST00000307720.3_1_4:159630856-159630895:-|nuORF	REV__ENST00000307720.3_1_4:159630856-159630895:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8422241210938	2	528.842416	1055.67028	0.56873	0.00030077	-0.24237	-0.00012817	0.32637	0.0001726	528.8421529952305	45.997	0.6621	46.062	45.84	46.503	0.065052					49	23	3	0	0	0	0.23007	1	10362	10362		19.257	0	1	1313700	+		24132	19871	13757	13758	30275	30275					0.14467168299461264
LLVSFAVAF	9	Unmodified	_LLVSFAVAF_					0	0	0			REV__ENST00000495425.6_1_17:19458825-19480863:+|nuORF	REV__ENST00000495425.6_1_17:19458825-19480863:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7867431640625	2	483.786579	965.558604	0.52749	0.00025519	-0.27819	-0.00013458	0.2493	0.00012061	483.7865206376396	55.666	0.54729	55.737	55.473	56.02	0.070885					35	19	2	0	0	0	0.155	1	13321	13321		30.225	0	1	746570	+		24133	16119	13758	13759	30276	30276					0.07444733942327275
LLVSFAVAF	9	Unmodified	_LLVSFAVAF_					0	0	0			REV__ENST00000495425.6_1_17:19458825-19480863:+|nuORF	REV__ENST00000495425.6_1_17:19458825-19480863:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	483.786579	965.558604	0.48119	0.00023279	0.24777	0.00011987	0.72895	0.00035266	483.7865376116949	55.7	0.51044	55.7	55.482	55.992	0	-0.046537	0.00032638	NaN	30.225	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	554180	+		24134	16119	13758	13759							0.07444733942327275
LLVSFAVAF	9	Unmodified	_LLVSFAVAF_					0	0	0			REV__ENST00000495425.6_1_17:19458825-19480863:+|nuORF	REV__ENST00000495425.6_1_17:19458825-19480863:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	483.786579	965.558604	0.52749	0.00025519	-0.27819	-0.00013458	0.2493	0.00012061	483.7865206376396	55.666	0.54729	55.737	55.473	56.02	0.070885	-0.0092472	-0.00018252	NaN	30.225	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	746570	+		24135	16119	13758	13759							0.07444733942327275
LLVSFAVAF	9	Unmodified	_LLVSFAVAF_					0	0	0			REV__ENST00000495425.6_1_17:19458825-19480863:+|nuORF	REV__ENST00000495425.6_1_17:19458825-19480863:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	483.786579	965.558604	0.56067	0.00027124	-0.22106	-0.00010694	0.33961	0.0001643	483.78644389409425	55.821	0.69902	55.802	55.434	56.133	-0.019081	0.055785	-0.00012724	NaN	30.225	35	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	559680	+		24136	16119	13758	13759							0.07444733942327275
LLVVHPDLI	9	Unmodified	_LLVVHPDLI_					0	0	0			REV__ENST00000574867.5_1_17:5292093-5322970:-|nuORF	REV__ENST00000574867.5_1_17:5292093-5322970:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8039855957031	2	509.81841	1017.62227	0.50597	0.00025796	-2.0617	-0.0010511	-1.5557	-0.00079314	509.8174410024054	78.68	0.50302	78.739	78.39	78.893	0.058151					30	18	2	0	0	0	0.24581	1	20275	20275		16.942	3.0362	1	140670	+		24137	14602	13759	13760	30277	30277					0.11416094379421793
LLVVHPDLI	9	Unmodified	_LLVVHPDLI_					0	0	0			REV__ENST00000574867.5_1_17:5292093-5322970:-|nuORF	REV__ENST00000574867.5_1_17:5292093-5322970:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.30267333984375	2	509.81841	1017.62227	0.64975	0.00033125	-2.0265	-0.0010332	-1.3768	-0.00070191	509.8174415178288	78.684	0.49936	78.653	78.37	78.87	-0.030426					30	18	2	0	0	0	0.24913	1	20393	20393		4.3292	0	1	172840	+		24138	14602	13759	13760	30278	30278					0.11416094379421793
LLVWLLVLRLP	11	Unmodified	_LLVWLLVLRLP_					0	0	0		ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;nc|ENSG00000154305|Q5JRA6-2|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3	ENSG00000154305|ENST00000344922|MIA3	ENSG00000154305|ENST00000344922|MIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.63580322265625	3	445.635598	1333.88496	0.39246	0.00017489	-0.14833	-6.6102E-05	0.24413	0.00010879	445.6356193784322	33.487	1.2457	33.487	33.31	34.556	0					209	44	5	0	0	0	0.48486	2	6480	6480;6573		0.094841	0.094841	1	11149000			24139	5120	13760	13761	30279;30280	30279					0.23137715115194624
LLVWLLVLRLP	11	Unmodified	_LLVWLLVLRLP_					0	0	0		ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;nc|ENSG00000154305|Q5JRA6-2|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3	ENSG00000154305|ENST00000344922|MIA3	ENSG00000154305|ENST00000344922|MIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.6358642578125	3	445.635598	1333.88496	-0.86388	-0.00038498	0.92515	0.00041228	0.061275	2.7306E-05	445.63626240736966	34.769	1.4846	34.769	34.528	36.012	0					245	53	6	0	0	0	0.48486	1	6866	6866		0.094841	0.094841	1	17152000			24140	5120	13760	13761	30281	30281					0.23137715115194624
LLVWLLVLRLP	11	Unmodified	_LLVWLLVLRLP_					0	0	0		ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;nc|ENSG00000154305|Q5JRA6-2|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3	ENSG00000154305|ENST00000344922|MIA3	ENSG00000154305|ENST00000344922|MIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.6358337402344	3	445.635598	1333.88496	0.39976	0.00017815	-0.010077	-4.4905E-06	0.38968	0.00017366	445.6356351473047	33.235	1.3314	33.291	33.171	34.502	0.055309					225	47	5	0	0	0	0.48486	4	6419	6419;6462;6510;6553		0.094841	0.094841	1	9976100			24141	5120	13760	13761	30282;30283;30284;30285	30282					0.23137715115194624
LLVWLLVLRLP	11	Unmodified	_LLVWLLVLRLP_					0	0	0		ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;nc|ENSG00000154305|Q5JRA6-2|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3	ENSG00000154305|ENST00000344922|MIA3	ENSG00000154305|ENST00000344922|MIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.6358337402344	3	445.635598	1333.88496	-1.0799	-0.00048125	0.97348	0.00043382	-0.10643	-4.743E-05	445.63636694264284	34.632	1.477	34.707	34.47	35.947	0.075306					242	53	6	0	0	0	0.48486	2	6831	6831;7050		0.094841	0.094841	1	20028000			24142	5120	13760	13761	30286;30287	30286					0.23137715115194624
LLVWLLVLRLP	11	Unmodified	_LLVWLLVLRLP_					0	0	0		ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;nc|ENSG00000154305|Q5JRA6-2|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3	ENSG00000154305|ENST00000344922|MIA3	ENSG00000154305|ENST00000344922|MIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.6359558105469	3	445.635598	1333.88496	0.1186	5.2852E-05	0.32721	0.00014582	0.44581	0.00019867	445.6357708622988	33.343	1.1926	33.41	33.271	34.463	0.066704					200	42	5	0	0	0	0.48486	2	6435	6435;6482		0.094841	0.094841	1	9303900			24143	5120	13760	13761	30288;30289	30288					0.23137715115194624
LLVWLLVLRLP	11	Unmodified	_LLVWLLVLRLP_					0	0	0		ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;nc|ENSG00000154305|Q5JRA6-2|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3	ENSG00000154305|ENST00000344922|MIA3	ENSG00000154305|ENST00000344922|MIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.6358642578125	3	445.635598	1333.88496	-0.48701	-0.00021703	0.50311	0.00022421	0.016107	7.1776E-06	445.63608872642646	34.584	1.5553	34.661	34.444	36	0.077377					261	55	6	0	0	0	0.48486	3	6810	6810;6854;6996		0.094841	0.094841	1	16860000			24144	5120	13760	13761	30290;30291;30292	30290					0.23137715115194624
LLVWLLVLRLP	11	Unmodified	_LLVWLLVLRLP_					0	0	0		ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;nc|ENSG00000154305|Q5JRA6-2|MIA3;nc|ENSG00000154305|Q5JRA6-3|MIA3	ENSG00000154305|ENST00000344922|MIA3	ENSG00000154305|ENST00000344922|MIA3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	445.635598	1333.88496	-1.0799	-0.00048125	0.97348	0.00043382	-0.10643	-4.743E-05	445.63636694264284	34.632	1.477	34.707	34.47	35.947	0.075306	-0.0052789	0.0002242	NaN	0.094841	242	53	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20028000			24145	5120	13760	13761							0.23137715115194624
LLVWVLAVI	9	Unmodified	_LLVWVLAVI_					0	0	0		ENSG00000188389|ENST00000334409|PDCD1	ENSG00000188389|ENST00000334409|PDCD1	ENSG00000188389|ENST00000334409|PDCD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.26904296875	2	513.341521	1024.66849	0.42818	0.0002198	-0.11089	-5.6926E-05	0.31729	0.00016288	513.3413917240988	72.23	0.32687	72.286	72.084	72.411	0.056572					19	11	2	0	0	0	0.24542	1	18383	18383		14.582	0	1	160280			24146	7747	13761	13762	30293	30293					0.15714159281515094
LLWDAPAK	8	Unmodified	_LLWDAPAK_					0	0	0		ENSG00000198488|ENST00000622824|B3GNT6;nc|ENSG00000198488|Q6ZMB0-3|B3GNT6	ENSG00000198488|ENST00000622824|B3GNT6	ENSG00000198488|ENST00000622824|B3GNT6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.1642761230469	2	457.260728	912.506903	-0.0482	-2.204E-05	-3.1743	-0.0014515	-3.2225	-0.0014735	457.25947416988714	24.625	0.42153	24.593	24.344	24.765	-0.03141					19	14	2	0	0	0	0.32778	1	3745	3745		20.871	0	1	63234			24147	8079	13762	13763	30294	30294					0.047149902484079576
LLWGPRRELV	10	Unmodified	_LLWGPRRELV_					0	0	0		ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8693237304688	2	619.87204	1237.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.02	1	100.06	99.557	100.56	0.038994								0	0	0	0.37581	1	26738	26738		3.9444	0.66309	1				24148	8717	13763	13764	30295	30295					0.1201706431365892
LLWHFRYE	8	Unmodified	_LLWHFRYE_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.8056640625	2	582.303458	1162.59236	0.091923	5.3527E-05	0.94141	0.00054818	1.0333	0.00060171	582.304011138836	17.92	0.65029	17.803	17.414	18.065	-0.11739					44	22	3	0	0	0	0.46461	1	1819	1819		0.79363	0	1	79443			24149	2029	13764	13765	30296	30296					0.017571554340747753
LLWMLTLV	8	Unmodified	_LLWMLTLV_					0	0	0			REV__ENST00000289371.10_1_2:99999292-100006235:+|nuORF	REV__ENST00000289371.10_1_2:99999292-100006235:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7984619140625	2	494.798632	987.582711	0.39858	0.00019722	-0.27364	-0.0001354	0.12494	6.1818E-05	494.79831672026955	79.884	0.88776	79.884	79.55	80.438	0					55	33	2	0	0	0	0.45851	1	20789	20789		2.8892	2.8892	1	298300	+		24150	19746	13765	13766	30297	30297					0.08842251104340448
LLWSTLHVP	9	Unmodified	_LLWSTLHVP_					0	0	0			REV__ENSG00000106302|ENST00000223026|HYAL4	REV__ENSG00000106302|ENST00000223026|HYAL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3207397460938	2	533.30821	1064.60187	0.27783	0.00014817	-2.1672	-0.0011558	-1.8893	-0.0010076	533.8073592105609	61.271	0.23	61.271	61.207	61.437	0					9	8	2	0	0	0	0.23147	1	15036	15036		13.508	0	1	206170	+		24151	14513	13766	13767	30298	30298					0.07214923719629951
LLWTRRSPRP	10	Unmodified	_LLWTRRSPRP_					0	0	0		ENST00000431717.6_2_3:111805339-111812270:+|nuORF	ENST00000431717.6_2_3:111805339-111812270:+|nuORF	ENST00000431717.6_2_3:111805339-111812270:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.38427734375	2	641.380563	1280.74657	0.54104	0.00034701	-2.1523	-0.0013804	-1.6112	-0.0010334	641.8820132114935	95.724	0.93621	95.721	95.347	96.283	-0.0038147					131	88	3	0	0	0	0.40106	1	25611	25611		3.2813	1.6287	1	160930			24152	10477	13767	13768	30299	30299					0.11742984919442279
LLWVWHWRRWV	11	Unmodified	_LLWVWHWRRWV_					0	0	0		ENST00000233202.10_1_2:219261288-219261426:+|nuORF	ENST00000233202.10_1_2:219261288-219261426:+|nuORF	ENST00000233202.10_1_2:219261288-219261426:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8296508789062	3	546.305245	1635.89391	0.46843	0.0002559	-2.13	-0.0011636	-1.6616	-0.00090774	546.6386960851848	67.587	0.48792	67.571	67.323	67.811	-0.016304					33	16	3	0	0	0	0.33346	1	16915	16915		0	0	1	155780			24153	8867	13768	13769	30300	30300					0.10139501524236039
LLYEILLVF	9	Unmodified	_LLYEILLVF_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7953491210938	2	561.844093	1121.67363	0.40693	0.00022863	1.6654	0.00093569	2.0723	0.0011643	561.8455078429564	86.691	2.7629	86.685	85.118	87.881	-0.0056229					231	116	5	0	0	0	0.25417	1	22812	22812		4.756	0.81161	1	1572100			24154	7524	13769	13770	30301	30301					0.11766418353477093
LLYEILLVF	9	Unmodified	_LLYEILLVF_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	561.844093	1121.67363	0.46097	0.000259	2.3004	0.0012925	2.7613	0.0015514	561.8454967535639	86.72	1.1586	86.72	86.326	87.484	0	0.024484	0.00011893	NaN	4.756	138	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1502600			24155	7524	13769	13770							0.11766418353477093
LLYEILLVF	9	Unmodified	_LLYEILLVF_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.844093	1121.67363	0.4197	0.0002358	2.2902	0.0012868	2.7099	0.0015226	561.8455005314628	86.598	1.2538	86.683	86.162	87.415	0.084251	-0.013385	0.00010755	NaN	4.756	151	52	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1400900			24156	7524	13769	13770							0.11766418353477093
LLYFRGPSF	9	Unmodified	_LLYFRGPSF_					0	0	0		ENST00000372523.1_1_20:44512698-44512878:+|nuORF	ENST00000372523.1_1_20:44512698-44512878:+|nuORF	ENST00000372523.1_1_20:44512698-44512878:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2786254882812	2	550.300384	1098.58622	0.48782	0.00026844	-0.88053	-0.00048455	-0.39271	-0.00021611	550.2996279799935	68.72	1.1536	68.792	68.649	69.803	0.071938					93	41	3	0	0	0	0.24913	1	17354	17354		12.532	12.532	1	329680			24157	9843	13770	13771	30302	30302					0.040866372025675446
LLYFRGPSF	9	Unmodified	_LLYFRGPSF_					0	0	0		ENST00000372523.1_1_20:44512698-44512878:+|nuORF	ENST00000372523.1_1_20:44512698-44512878:+|nuORF	ENST00000372523.1_1_20:44512698-44512878:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2786254882812	2	550.300384	1098.58622	0.38742	0.0002132	-0.92606	-0.00050961	-0.53864	-0.00029641	550.299663890789	68.836	1.0436	68.817	68.739	69.782	-0.01915					51	37	2	0	0	0	0.23783	1	17373	17373		12.532	12.532	1	317780			24158	9843	13770	13771	30303	30303					0.040866372025675446
LLYGFLPDF	9	Unmodified	_LLYGFLPDF_					0	0	0		nc|ENSG00000155893|Q8TE99-2|PXYLP1;ENSG00000155893|ENST00000286353|PXYLP1	nc|ENSG00000155893|Q8TE99-2|PXYLP1	nc|ENSG00000155893|Q8TE99-2|PXYLP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.271484375	2	542.789318	1083.56408	0.613	0.00033273	-0.23083	-0.00012529	0.38217	0.00020744	542.7889895139137	88.529	0.4328	88.529	88.364	88.797	0					31	20	2	0	0	0	0.25417	1	23414	23414		8.5933	0	1	95461			24159	5201	13771	13772	30304	30304					0.0256441273411383
LLYGHAIL	8	Unmodified	_LLYGHAIL_					0	0	0		RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant;nc|ENSG00000196218|P21817-3|RYR1	RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7790832519531	2	450.271096	898.527639	0.32909	0.00014818	-3.6645	-0.00165	-3.3354	-0.0015018	450.2700647277266	64.3	1.1374	64.393	63.711	64.848	0.09288					77	41	3	0	0	0	0.33618	1	15878	15878		17.087	0	1	171420			24160	8096;7838	13772	13773	30305	30305					0.07431580628076517
LLYIIFLHDH	10	Unmodified	_LLYIIFLHDH_					0	0	0			REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.3621826171875	2	642.360973	1282.70739	-0.011273	-7.2416E-06	-0.17957	-0.00011535	-0.19085	-0.00012259	642.3615914637372	112.84	0.28555	112.84	112.63	112.92	0					55	33	3	0	0	0	0.40992	1	29315	29315		1.6526	0.17072	1	60690	+		24161	22604	13773	13774	30306	30306					0.07734839845215902
LLYIIFLHDH	10	Unmodified	_LLYIIFLHDH_					0	0	0			REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3614501953125	2	642.360973	1282.70739	0.41698	0.00026785	-0.050216	-3.2257E-05	0.36677	0.0002356	642.3614822861031	113.68	0.36205	113.7	113.64	114	0.014824					61	44	2	0	0	0	0.40992	1	29572	29572		1.6526	0.17072	1	71929	+		24162	22604	13773	13774	30307	30307					0.07734839845215902
LLYIIFLHDH	10	Unmodified	_LLYIIFLHDH_					0	0	0			REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3622436523438	2	642.360973	1282.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.31	1	114.33	113.83	114.83	0.016708								0	0	0	0.38126	1	29728	29728		1.6526	0.17072	1		+		24163	22604	13773	13774	30308	30308					0.07734839845215902
LLYIIFLHDH	10	Unmodified	_LLYIIFLHDH_					0	0	0			REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3621215820312	2	642.360973	1282.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.06	1	118.08	117.58	118.58	0.023476								0	0	0	0.38126	1	30584	30584		1.6526	0.17072	1		+		24164	22604	13773	13774	30309	30309					0.07734839845215902
LLYIIFLHDH	10	Unmodified	_LLYIIFLHDH_					0	0	0			REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.859130859375	2	642.360973	1282.70739	0.41698	0.00026785	-0.050216	-3.2257E-05	0.36677	0.0002356	642.3614822861031	113.68	0.36205	113.7	113.64	114	0.014824					61	44	2	0	0	0	0.32123	1	29627	29627		1.6526	0.17072	1	71929	+		24165	22604	13773	13774	30310	30310					0.07734839845215902
LLYIIFLHDH	10	Unmodified	_LLYIIFLHDH_					0	0	0			REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8595581054688	2	642.360973	1282.70739	0.41579	0.00026709	-0.28858	-0.00018537	0.12722	8.1718E-05	642.3614570682106	114.07	0.22109	114.09	113.97	114.19	0.016708					39	26	2	0	0	0	0.32123	1	29666	29666		1.6526	0.17072	1	41958	+		24166	22604	13773	13774	30311	30311					0.07734839845215902
LLYIIFLHDH	10	Unmodified	_LLYIIFLHDH_					0	0	0			REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8595581054688	2	642.360973	1282.70739	0.41618	0.00026734	-0.085019	-5.4613E-05	0.33116	0.00021273	642.3615012084824	113.41	0.36876	113.43	113.27	113.64	0.014824					73	44	2	0	0	0	0.32123	1	29536	29536		1.6526	0.17072	1	52685	+		24167	22604	13773	13774	30312	30312					0.07734839845215902
LLYIIFLHDH	10	Unmodified	_LLYIIFLHDH_					0	0	0			REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	REV__ENST00000596944.1_1_19:6896431-6897596:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	642.360973	1282.70739	-0.011273	-7.2416E-06	-0.17957	-0.00011535	-0.19085	-0.00012259	642.3615914637372	112.84	0.28555	112.84	112.63	112.92	0	0	0	NaN	1.6526	55	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60690	+		24168	22604	13773	13774							0.07734839845215902
LLYKVLGVL	9	Unmodified	_LLYKVLGVL_					0	0	0		nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1;nc|ENSG00000101187|Q96BD0-2|SLCO4A1;ENST00000497209.5_1_20:61299742-61303242:+|nuORF	nc|ENSG00000101187|Q96BD0-4|SLCO4A1	nc|ENSG00000101187|Q96BD0-4|SLCO4A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.803955078125	2	509.338978	1016.6634	0.65467	0.00033345	-0.2135	-0.00010874	0.44117	0.00022471	509.3389951396273	78.613	0.23884	78.613	78.486	78.725	0					11	8	2	0	0	0	0.25417	1	20357	20357		4.756	0.42677	1	51813			24169	1672	13774	13775	30313	30313					0.1557385541889289
LLYLGLVAHKL	11	Unmodified	_LLYLGLVAHKL_					0	0	0			REV__nc|ENSG00000168079|Q6ZMJ2-4|SCARA5	REV__nc|ENSG00000168079|Q6ZMJ2-4|SCARA5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.93255615234375	3	413.932303	1238.77508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.719	1	39.819	39.319	40.319	0.099407								0	0	0	0.37452	1	8398	8398		2.8433	0.21205	1		+		24170	17438	13775	13776	30314	30314					0.16524289776043588
LLYLINMP	8	Unmodified	_LLYLINMP_					0	0	0			REV__ENSG00000196639|ENST00000431010|HRH1	REV__ENSG00000196639|ENST00000431010|HRH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.341796875	2	488.780439	975.546325	0.26859	0.00013128	-2.881	-0.0014082	-2.6124	-0.0012769	488.7787540463747	65.623	0.23711	65.711	65.547	65.784	0.088882					14	8	2	0	0	0	0.3225	1	16356	16356		22.453	1.5814	1	88054	+		24171	18670	13776	13777	30315	30315					0.05757374207621524
LLYLRGPFS	9	Unmodified	_LLYLRGPFS_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2952270507812	2	533.30821	1064.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.508	1	69.574	69.074	70.074	0.066048								0	0	0	0.20238	1	17563	17563		21.747	4.6601	1				24172	8602	13777	13778	30316	30316					0.07214923719629951
LLYLRGPFS	9	Unmodified	_LLYLRGPFS_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2952880859375	2	533.30821	1064.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.605	1	69.583	69.083	70.083	-0.022087								0	0	0	0.22065	1	17585	17585		15.847	0	1				24173	8602	13777	13778	30317	30317					0.07214923719629951
LLYNLLDIS	9	Unmodified	_LLYNLLDIS_					0	0	0		CON__Q2YDI2	CON__Q2YDI2	CON__Q2YDI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7984008789062	2	532.305332	1062.59611	0.78655	0.00041868	3.7694	0.0020065	4.556	0.0024252	532.8095298856067	56.386	0.24504	56.464	56.358	56.603	0.078674					12	8	2	0	0	0	0.27532	1	13543	13543		12.532	0	1	196140		+	24174	229	13778	13779	30318	30318					0.0673178041729443
LLYPFHLFR	9	Unmodified	_LLYPFHLFR_					0	0	0			REV__nc|ENSG00000170242|Q96K76-2|USP47	REV__nc|ENSG00000170242|Q96K76-2|USP47	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.3478393554688	2	603.345126	1204.6757	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.997	1	93.996	93.496	94.496	-0.00051117								0	0	0	0.264	1	25053	25053		1.8442	0.36234	1		+		24175	17566	13779	13780	30319	30319					0.08154891881918047
LLYPGLTLL	9	Unmodified	_LLYPGLTLL_					0	0	0		ENST00000413209.6_1_22:30091710-30091863:+|nuORF	ENST00000413209.6_1_22:30091710-30091863:+|nuORF	ENST00000413209.6_1_22:30091710-30091863:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.79754638671875	2	501.815336	1001.61612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.963	1	91.963	91.463	92.463	0								0	0	0	0.23091	1	24440	24440		12.532	0.89125	1				24176	10286	13780	13781	30320	30320					0.11537576147907203
LLYPGLTLL	9	Unmodified	_LLYPGLTLL_					0	0	0		ENST00000413209.6_1_22:30091710-30091863:+|nuORF	ENST00000413209.6_1_22:30091710-30091863:+|nuORF	ENST00000413209.6_1_22:30091710-30091863:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7973327636719	2	501.815336	1001.61612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.919	1	91.92	91.42	92.42	0.00046539								0	0	0	0.23091	1	24420	24420		12.532	0.89125	1				24177	10286	13780	13781	30321	30321					0.11537576147907203
LLYSAFPLQ	9	Unmodified	_LLYSAFPLQ_					0	0	0			REV__ENSG00000044459|ENST00000380647|CNTLN	REV__ENSG00000044459|ENST00000380647|CNTLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.294921875	2	526.294768	1050.57498	0.19206	0.00010108	-0.024267	-1.2772E-05	0.16779	8.8307E-05	526.2947270348803	81.564	0.63615	81.633	81.382	82.018	0.068993					60	28	3	0	0	0	0.21303	1	21302	21302		21.747	5.8995	1	352690	+		24178	13536	13781	13782	30322	30322					0.05171815108406008
LLYSPEEPKIL	11	Unmodified	_LLYSPEEPKIL_					0	0	0		nc|ENSG00000152620|Q4G0N4-3|NADK2;nc|ENSG00000152620|Q4G0N4-2|NADK2;ENSG00000152620|ENST00000381937|NADK2	nc|ENSG00000152620|Q4G0N4-3|NADK2	nc|ENSG00000152620|Q4G0N4-3|NADK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2191162109375	3	434.583228	1300.72785	-0.24798	-0.00010777	1.3246	0.00057565	1.0766	0.00046788	434.5837342258955	51.874	0.70174	51.873	51.631	52.332	-0.00081253					56	25	3	0	0	0	0.33169	1	12158	12158		3.8459	0	1	441210			24179	5030	13782	13783	30323	30323					0.08951965714391008
LLYSRLAPPP	10	Unmodified	_LLYSRLAPPP_					0	0	0		ENST00000494101.1_1_16:30680055-30680963:+|nuORF;nc|ENSG00000156860|Q9HAH7|FBRS;nc|ENSG00000156860|Q9HAH7-1|FBRS;ENSG00000156860|ENST00000356166|FBRS	ENST00000494101.1_1_16:30680055-30680963:+|nuORF	ENST00000494101.1_1_16:30680055-30680963:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7929077148438	2	563.834591	1125.65463	0.49191	0.00027736	0.067119	3.7844E-05	0.55903	0.0003152	563.834684568098	48.174	0.55007	48.218	48.037	48.588	0.04332					29	20	2	0	0	0	0.31395	1	10960	10960		12.532	8.2023	1	218990			24180	5260	13783	13784	30324	30324					0.09682881782418917
LLYSSEKKIF	10	Unmodified	_LLYSSEKKIF_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104960|Q86YD1-3|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.60797119140625	3	409.904301	1226.69108	0.055548	2.2769E-05	-0.06345	-2.6009E-05	-0.0079023	-3.2392E-06	410.2383105055418	56.977	1.1933	56.977	56.471	57.665	0					55	43	2	0	0	0	0.31867	1	13691	13691		7.9454	0.84368	1	217890			24181	1938	13784	13785	30325	30325					0.08679713888477636
LLYTYVTE	8	Unmodified	_LLYTYVTE_					0	0	0			REV__nc|ENSG00000186642|O00408-5|PDE2A	REV__nc|ENSG00000186642|O00408-5|PDE2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2627868652344	2	501.263133	1000.51171	0.75602	0.00037896	-0.93449	-0.00046842	-0.17847	-8.9458E-05	501.262435774204	46.923	0.703	46.977	46.657	47.36	0.054371					39	24	2	0	0	0	0.38703	1	10615	10615		20.871	3.9289	1	760720	+		24182	18456	13785	13786	30326	30326					0.0114782960051798
LLYTYVTE	8	Unmodified	_LLYTYVTE_					0	0	0			REV__nc|ENSG00000186642|O00408-5|PDE2A	REV__nc|ENSG00000186642|O00408-5|PDE2A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	501.263133	1000.51171	0.67344	0.00033757	-0.74032	-0.00037109	-0.066881	-3.3525E-05	501.7644851807978	46.993	0.45343	46.993	46.76	47.214	0	0.019775	5.1745E-05	NaN	20.871	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	717560	+		24183	18456	13785	13786							0.0114782960051798
LLYTYVTE	8	Unmodified	_LLYTYVTE_					0	0	0			REV__nc|ENSG00000186642|O00408-5|PDE2A	REV__nc|ENSG00000186642|O00408-5|PDE2A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	501.263133	1000.51171	0.40301	0.00020201	-0.70193	-0.00035185	-0.29892	-0.00014984	501.2625150390727	46.897	0.64723	46.949	46.679	47.326	0.052574	-0.024052	9.0229E-05	NaN	20.871	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	776640	+		24184	18456	13785	13786							0.0114782960051798
LLYYTHQI	8	Unmodified	_LLYYTHQI_					0	0	0			REV__ENST00000369983.3_1_10:104122232-104122292:+|nuORF	REV__ENST00000369983.3_1_10:104122232-104122292:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8065185546875	2	525.784567	1049.55458	0.29717	0.00015625	2.2419	0.0011787	2.539	0.001335	526.2872637793826	39.385	0.24099	39.477	39.307	39.548	0.09267					11	8	2	0	0	0	0.33245	1	8279	8279		19.439	1.2926	1	179170	+		24185	20369	13786	13787	30327	30327					0.03178644448621526
LLYYYDEY	8	Unmodified	_LLYYYDEY_					0	0	0		ENSG00000128973|ENST00000249806|CLN6;nc|ENSG00000128973|Q9NWW5-2|CLN6	ENSG00000128973|ENST00000249806|CLN6	ENSG00000128973|ENST00000249806|CLN6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.8792114257812	2	571.258048	1140.50154	0.66476	0.00037975	3.4801	0.001988	4.1448	0.0023678	571.7605817071179	50.78	0.32558	50.78	50.623	50.949	0					17	11	2	0	0	0	0.34297	1	11839	11839		6.3541	0.14832	1	230750			24186	3404	13787	13788	30328	30328					-0.06308778124707715
LLYYYDEY	8	Unmodified	_LLYYYDEY_					0	0	0		ENSG00000128973|ENST00000249806|CLN6;nc|ENSG00000128973|Q9NWW5-2|CLN6	ENSG00000128973|ENST00000249806|CLN6	ENSG00000128973|ENST00000249806|CLN6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	571.258048	1140.50154	0.74921	0.00042799	4.4122	0.0025205	5.1614	0.0029485	571.2618729794667	50.737	0.3816	50.784	50.603	50.985	0.046555	0.0015805	0.00054616	NaN	6.3541	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181410			24187	3404	13787	13788							-0.06308778124707715
LMAGLFPWL	9	Unmodified	_LMAGLFPWL_					0	0	0		ENST00000337907.7_2_1:8413121-8413223:-|nuORF	ENST00000337907.7_2_1:8413121-8413223:-|nuORF	ENST00000337907.7_2_1:8413121-8413223:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.813232421875	2	524.288431	1046.56231	0.64036	0.00033574	1.8007	0.00094409	2.4411	0.0012798	524.2895200496655	72.36	0.57108	72.417	72.033	72.604	0.056572					26	20	2	0	0	0	0.19319	1	18424	18424		28.173	3.9633	1	137100			24188	9498	13788	13789	30329	30329					0.04089080444532556
LMAKQQQLK	9	Unmodified	_LMAKQQQLK_					0	0	0		nc|ENSG00000077935|Q8NDV3-2|SMC1B;ENSG00000077935|ENST00000357450|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.30029296875	2	544.318251	1086.62195	0.3986	0.00021697	-3.6951	-0.0020113	-3.2965	-0.0017944	544.821012935621	64.89	0.31792	64.89	64.699	65.017	0					17	11	3	0	0	0	0.24913	1	16108	16108		12.532	7.3009	1	98865			24189	1098	13789	13790	30330	30330					0.08210351387924675
LMALHHAL	8	Unmodified	_LMALHHAL_					0	0	0		ENST00000496494.5_1_8:72111577-72234167:-|nuORF;nc|ENSG00000104313|Q99502-3|EYA1;nc|ENSG00000104313|Q99502-2|EYA1;ENSG00000104313|ENST00000340726|EYA1	ENST00000496494.5_1_8:72111577-72234167:-|nuORF	ENST00000496494.5_1_8:72111577-72234167:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.59234619140625	2	453.254923	904.495293	0.26617	0.00012064	-0.2223	-0.00010076	0.043863	1.9881E-05	453.2545049672426	30.124	0.44531	30.124	29.945	30.391	0					22	15	2	0	0	0	0.34147	1	5514	5514		11.114	0.29054	1	149810			24190	1878	13790	13791	30331	30331					0.039224699534202045
LMASLPYEY	9	Unmodified	_LMASLPYEY_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000532027.5_1_11:6568031-6569307:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.3015747070312	2	543.762443	1085.51033	0.70655	0.0003842	1.0564	0.00057445	1.763	0.00095865	543.7627934234687	64.158	1.112	64.158	63.722	64.834	0					60	40	2	0	0	0	0.25417	1	15836	15836		8.5933	8.5933	1	863320			24191	7128	13791	13792	30332	30332					-0.029001277598808883
LMAVGDKMK	9	Unmodified	_LMAVGDKMK_					0	0	0			REV__CTAGE1|p.A429Sfs*3|1|0.31|ENSG00000212710|chr18:22416527-22416528|-/T|frameshift_variant	REV__CTAGE1|p.A429Sfs*3|1|0.31|ENSG00000212710|chr18:22416527-22416528|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.76727294921875	2	496.767006	991.519458	0.20884	0.00010374	0.22375	0.00011115	0.43259	0.0002149	496.767150868674	18.833	0.64666	18.833	18.479	19.125	0					44	22	3	0	0	0	0.25706	1	2060	2060		6.7232	1.9672	1	82554	+		24192	13288	13792	13793	30333	30333					0.023359423248052735
LMCHLFVD	8	Unmodified	_LMCHLFVD_					0	0	0		ENST00000303545.3_1_8:125499025-125499136:+|nuORF	ENST00000303545.3_1_8:125499025-125499136:+|nuORF	ENST00000303545.3_1_8:125499025-125499136:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2524719238281	2	489.232799	976.451044	0.43077	0.00021075	-0.91976	-0.00044998	-0.48899	-0.00023923	489.2323226955703	59.11	0.62587	59.096	58.889	59.515	-0.014267					23	21	2	0	0	0	0.34046	1	14456	14456		14.582	14.582	1	149700			24193	9250	13793	13794	30334	30334					-0.0381230225506215
LMDGKKSNSV	10	Unmodified	_LMDGKKSNSV_					0	0	0		ENST00000461997.5_1_12:2998296-2998419:+|nuORF	ENST00000461997.5_1_12:2998296-2998419:+|nuORF	ENST00000461997.5_1_12:2998296-2998419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7819213867188	2	539.781699	1077.54884	0.98026	0.00052913	-0.61355	-0.00033118	0.36671	0.00019794	539.7813048658419	50.266	0.85706	50.311	49.825	50.682	0.044891					81	31	4	0	0	0	0.15473	1	11682	11682		38.176	38.176	1	1241100			24194	10751	13794	13795	30335	30335					0.013171778746482232
LMDGKKSNSV	10	Unmodified	_LMDGKKSNSV_					0	0	0		ENST00000461997.5_1_12:2998296-2998419:+|nuORF	ENST00000461997.5_1_12:2998296-2998419:+|nuORF	ENST00000461997.5_1_12:2998296-2998419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7820434570312	2	539.781699	1077.54884	1.0747	0.0005801	-0.79563	-0.00042947	0.27907	0.00015064	539.7812002694694	50.27	0.86245	50.291	49.85	50.712	0.020691					76	31	3	0	0	0	0.29092	1	11726	11726		21.537	1.1224	1	1221500			24195	10751	13794	13795	30336	30336					0.013171778746482232
LMDRWKKL	8	Unmodified	_LMDRWKKL_					0	0	0		nc|ENSG00000152578|P48058-2|GRIA4;ENSG00000152578|ENST00000282499|GRIA4	nc|ENSG00000152578|P48058-2|GRIA4	nc|ENSG00000152578|P48058-2|GRIA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.266357421875	2	545.315512	1088.61647	0.81157	0.00044256	2.6158	0.0014264	3.4273	0.001869	545.3167107993017	63.932	1.1614	63.922	63.591	64.752	-0.0095291					106	41	4	0	0	0	0.34046	1	15960	15960		9.3474	2.0582	1	833280			24196	5025	13795	13796	30337	30337					0.07570672596102668
LMDVSSGL	8	Unmodified	_LMDVSSGL_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.9031066894531	2	411.207304	820.400055	0.17399	7.1545E-05	-2.9559	-0.0012155	-2.782	-0.001144	411.2081364264935	43.285	0.49297	43.369	43.217	43.71	0.083992					29	17	2	0	0	0	0.34185	1	9533	9533		2.5775	1.7838	1	139120	+		24197	18850	13796	13797	30338	30338					-0.017329280282410764
LMELARRKGF	10	Unmodified	_LMELARRKGF_					0	0	0		nc|ENSG00000107447|P04053-2|DNTT;ENSG00000107447|ENST00000371174|DNTT	nc|ENSG00000107447|P04053-2|DNTT	nc|ENSG00000107447|P04053-2|DNTT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.56915283203125	3	407.569259	1219.68595	-0.22748	-9.2714E-05	-2.8129	-0.0011465	-3.0404	-0.0012392	408.2355133939733	15.469	1.4859	15.405	15.186	16.672	-0.064413					143	50	5	0	0	0	0.37568	1	1124	1124		7.9454	0.84368	1	636260			24198	2127	13797	13798	30339	30339					0.08489131544843076
LMELTEVLK	9	Unmodified	_LMELTEVLK_					0	0	0			REV__MAP3K15|p.E1259*|1|0.27|ENSG00000180815|chrX:19361498-19361499|-/A|frameshift_variant	REV__MAP3K15|p.E1259*|1|0.27|ENSG00000180815|chrX:19361498-19361499|-/A|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2951049804688	2	538.307018	1074.59948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.574	1	63.574	63.074	64.074	0								0	0	0	0.24066	1	15754	15754		9.3831	0.78985	1		+		24199	18119	13798	13799	30340	30340					0.06516707199625671
LMEVLVEKIF	10	Unmodified	_LMEVLVEKIF_					0	0	0		nc|ENSG00000186191|P59827-2|BPIFB4;ENSG00000186191|ENST00000375483|BPIFB4	nc|ENSG00000186191|P59827-2|BPIFB4	nc|ENSG00000186191|P59827-2|BPIFB4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5691833496094	3	407.570154	1219.68863	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.783	1	15.673	15.173	16.173	-0.10981								0	0	0	0.35285	1	1132	1132		13.615	4.0709	1				24200	7601	13799	13800	30341	30341					0.08757542159128207
LMFMRIFF	8	Unmodified	_LMFMRIFF_					0	0	0			REV__Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|185|2|anti-sense	REV__Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|185|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3041381835938	2	552.790284	1103.56601	0.57991	0.00032057	-2.3765	-0.0013137	-1.7966	-0.00099314	552.7889823708595	55.163	0.22374	55.163	54.974	55.198	0					11	7	2	0	0	0	0.33995	1	13104	13104		15.768	10.538	1	283540	+		24201	22732	13800	13801	30342	30342					0.01837426946758569
LMFYKEKP	8	Unmodified	_LMFYKEKP_					0	0	0		ENSG00000205301|ENST00000511113|MGAT4D	ENSG00000205301|ENST00000511113|MGAT4D	ENSG00000205301|ENST00000511113|MGAT4D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3143920898438	2	528.283346	1054.55214	0.47941	0.00025326	-4.4104	-0.0023299	-3.931	-0.0020767	528.281325814443	39.738	0.16707	39.831	39.72	39.887	0.09267					10	5	3	0	0	0	0.34167	1	8416	8416		3.9444	0	1	109440			24202	8280	13801	13802	30343	30343					0.027044727193015206
LMGKMYLKT	9	Unmodified	_LMGKMYLKT_					0	0	0		ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2945556640625	2	542.798306	1083.58206	0.71412	0.00038762	-0.74854	-0.00040631	-0.034425	-1.8686E-05	542.7960839125251	45.478	0.62965	45.478	45.146	45.776	0					55	22	4	0	0	0	0.24688	1	10195	10195		14.838	0.93222	1	612250			24203	4269	13802	13803	30344	30344					0.04361088392988677
LMGPPTQTF	9	Unmodified	_LMGPPTQTF_					0	0	0			REV__ENST00000487336.1_1_7:37172686-37264491:-|nuORF	REV__ENST00000487336.1_1_7:37172686-37264491:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.26605224609375	2	496.249503	990.484453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.074	1	69.055	68.555	69.555	-0.019157								0	0	0	0.16935	1	17424	17424		30.225	9.7712	1		+		24204	13633	13803	13804	30345	30345					-0.011169772115181331
LMGQRYHR	8	Unmodified	_LMGQRYHR_					0	0	0		ENSG00000083814|ENST00000317398|ZNF671	ENSG00000083814|ENST00000317398|ZNF671	ENSG00000083814|ENST00000317398|ZNF671	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7772216796875	2	530.777085	1059.53962	0.19009	0.00010089	-1.0466	-0.00055553	-0.85654	-0.00045463	530.7766549561818	14.415	0.56787	14.415	14.221	14.789	0					38	19	4	0	0	0	0.46022	1	773	773		2.3027	0	1	120260			24205	1231	13804	13805	30346	30346					0.012228740996079068
LMHFGEHD	8	Unmodified	_LMHFGEHD_					0	0	0		nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.21380615234375	2	493.213452	984.412351	0.48433	0.00023888	0.35611	0.00017564	0.84044	0.00041452	493.2135489332807	79.429	1.9047	79.429	78.462	80.367	0					192	74	5	0	0	0	0.4397	1	20632	20632		9.3474	0	1	3253600			24206	4693	13805	13806	30347	30347					-0.08047891565217924
LMILKTHF	8	Unmodified	_LMILKTHF_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2509765625	2	501.793881	1001.57321	0.49579	0.00024879	0.024872	1.2481E-05	0.52067	0.00026127	501.79398190475695	63.531	0.58427	63.522	63.297	63.882	-0.0085526					34	20	2	0	0	0	0.34131	1	15668	15668		7.9102	2.6795	1	412280	+		24207	16560	13806	13807	30348	30348					0.07248482818818047
LMILPKSLF	9	Unmodified	_LMILPKSLF_					0	0	0			REV__ENSG00000183313|ENST00000332249|OR52L1	REV__ENSG00000183313|ENST00000332249|OR52L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7626342773438	2	531.325014	1060.63547	0.55597	0.0002954	0.46603	0.00024761	1.022	0.00054302	531.3253360992094	88.555	0.65996	88.552	88.336	88.996	-0.0028458					40	28	2	0	0	0	0.24542	1	23516	23516		14.582	6.6715	1	139590	+		24208	18254	13807	13808	30349	30349					0.10758209167124733
LMINEMTTDHI	11	Unmodified	_LMINEMTTDHI_					0	0	0			REV__ENSG00000183185|ENST00000472788|GABRR3	REV__ENSG00000183185|ENST00000472788|GABRR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.877685546875	3	439.877429	1316.61046	-0.17166	-7.551E-05	0.72351	0.00031826	0.55185	0.00024275	439.877666315158	15.337	0.4633	15.337	15.127	15.591	0					39	15	3	0	0	0	0.44088	1	1030	1030		5.8681	0.46543	1	187450	+		24209	18244	13808	13809	30350	30350					-0.03518258488384163
LMKGLWDMMV	10	Unmodified	_LMKGLWDMMV_					0	0	0			REV__nc|ENSG00000132437|P20711-2|DDC	REV__nc|ENSG00000132437|P20711-2|DDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.58837890625	3	408.537691	1222.59124	0.14604	5.9661E-05	-0.12746	-5.2071E-05	0.01858	7.5904E-06	408.5374112857839	39.151	0.16442	39.25	39.155	39.319	0.099407					8	5	3	0	0	0	0.31847	1	8238	8238		1.7423	1.2878	1	96921	+		24210	15572	13809	13810	30351	30351					-0.01114886313007446
LMKHQSIRGF	10	Unmodified	_LMKHQSIRGF_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.75335693359375	3	406.225492	1215.65465	0.033825	1.374E-05	-0.087972	-3.5736E-05	-0.054147	-2.1996E-05	406.22533773562213	37.977	0.50295	37.977	37.646	38.149	0					24	17	2	0	0	0	0.31745	1	7804	7804		2.086	0.17963	1	182250			24211	7690	13810	13811	30352	30352					0.05544558510769093
LMKLVRIPLRN	11	Unmodified	_LMKLVRIPLRN_					0	0	0			REV__ENSG00000183779|ENST00000331569|ZNF703	REV__ENSG00000183779|ENST00000331569|ZNF703	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.6247253417969	3	451.623475	1351.8486	0.33123	0.00014959	1.2825	0.00057921	1.6137	0.0007288	451.62455022710236	40.408	1.2551	40.408	40.05	41.305	0					168	45	5	0	0	0	0.46554	1	8634	8634		2.6312	0.37851	1	1446700	+		24212	18282	13811	13812	30353	30353					0.18674514946837917
LMKLVRIPLRN	11	Unmodified	_LMKLVRIPLRN_					0	0	0			REV__ENSG00000183779|ENST00000331569|ZNF703	REV__ENSG00000183779|ENST00000331569|ZNF703	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.6243896484375	3	451.623475	1351.8486	0.26883	0.00012141	1.3263	0.00059897	1.5951	0.00072038	451.62440225706007	41.831	1.1571	41.921	41.77	42.927	0.090252					114	42	4	0	0	0	0.45202	1	9117	9117		4.4062	1.3339	1	1586900	+		24213	18282	13811	13812	30354	30354					0.18674514946837917
LMKLVRIPLRN	11	Unmodified	_LMKLVRIPLRN_					0	0	0			REV__ENSG00000183779|ENST00000331569|ZNF703	REV__ENSG00000183779|ENST00000331569|ZNF703	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2187805175781	3	451.623475	1351.8486	0.38451	0.00017365	1.1299	0.00051029	1.5144	0.00068395	451.624543964105	40.23	1.144	40.323	39.994	41.138	0.09267					151	41	5	0	0	0	0.33296	1	8625	8625		2.6312	1.5215	1	1639800	+		24214	18282	13811	13812	30355	30355					0.18674514946837917
LMKLVRIPLRN	11	Unmodified	_LMKLVRIPLRN_					0	0	0			REV__ENSG00000183779|ENST00000331569|ZNF703	REV__ENSG00000183779|ENST00000331569|ZNF703	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	451.623475	1351.8486	0.030892	1.3951E-05	1.9185	0.00086645	1.9494	0.0008804	451.6244220081687	41.972	1.0591	41.972	41.757	42.816	0	0.038658	0.00017483	NaN	4.4062	87	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	921750	+		24215	18282	13811	13812							0.18674514946837917
LMKLVRIPLRN	11	Unmodified	_LMKLVRIPLRN_					0	0	0			REV__ENSG00000183779|ENST00000331569|ZNF703	REV__ENSG00000183779|ENST00000331569|ZNF703	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	451.623475	1351.8486	0.26883	0.00012141	1.3263	0.00059897	1.5951	0.00072038	451.62440225706007	41.831	1.1571	41.921	41.77	42.927	0.090252	-0.011671	-0.00062762	NaN	4.4062	114	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1586900	+		24216	18282	13811	13812							0.18674514946837917
LMKLVRIPLRN	11	Unmodified	_LMKLVRIPLRN_					0	0	0			REV__ENSG00000183779|ENST00000331569|ZNF703	REV__ENSG00000183779|ENST00000331569|ZNF703	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	451.623475	1351.8486	0.41573	0.00018776	1.931	0.0008721	2.3468	0.0010599	451.62441747242127	41.81	1.0017	41.906	41.748	42.749	0.096626	-0.026987	0.00019178	NaN	4.4062	74	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	840480	+		24217	18282	13811	13812							0.18674514946837917
LMKPLLVF	8	Unmodified	_LMKPLLVF_					0	0	0		ENST00000528173.5_1_11:46391373-46400221:+|nuORF;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;nc|ENSG00000157680|O75912|DGKI;ENSG00000157680|ENST00000614521|DGKI	ENST00000528173.5_1_11:46391373-46400221:+|nuORF;nc|ENSG00000157680|O75912|DGKI	nc|ENSG00000157680|O75912|DGKI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.80120849609375	2	480.801174	959.587796	0.48179	0.00023164	-0.33288	-0.00016005	0.14891	7.1594E-05	480.80100077167305	84.966	1.74	84.953	84.385	86.125	-0.01284					228	67	6	0	0	0	0.45015	1	22585	22585		5.7604	0	1	15007000			24218	5321;11581	13812	13813	30356	30356					0.10638554966976699
LMKTTFVFII	10	Unmodified	_LMKTTFVFII_					0	0	0		ENST00000316902.11_1_14:23652558-23652753:-|nuORF;ENST00000525062.1_3_14:23652243-23652753:-|nuORF	ENST00000316902.11_1_14:23652558-23652753:-|nuORF	ENST00000316902.11_1_14:23652558-23652753:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8568115234375	2	606.856678	1211.6988	0.28954	0.00017571	0.054283	3.2942E-05	0.34382	0.00020865	606.8567157895692	16.112	0.43009	16.112	15.918	16.349	0					23	14	2	0	0	0	0.39227	1	1224	1224		4.897	0	1	46964			24219	9360	13813	13814	30357	30357					0.10142149884404716
LMKTTFVFII	10	Unmodified	_LMKTTFVFII_					0	0	0		ENST00000316902.11_1_14:23652558-23652753:-|nuORF;ENST00000525062.1_3_14:23652243-23652753:-|nuORF	ENST00000316902.11_1_14:23652558-23652753:-|nuORF	ENST00000316902.11_1_14:23652558-23652753:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	606.856678	1211.6988	0.28954	0.00017571	0.054283	3.2942E-05	0.34382	0.00020865	606.8567157895692	16.112	0.43009	16.112	15.918	16.349	0	-0.025609	-0.00023447	NaN	4.897	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46964			24220	9360	13813	13814							0.10142149884404716
LMLMALSTL	9	Oxidation (M)	_LMLM(Oxidation (M))ALSTL_		LMLM(1)ALSTL		LM(-35)LM(35)ALSTL	0	0	1			REV__nc|ENSG00000171100|Q13496-2|MTM1;REV__nc|ENSG00000063601|Q13613-2|MTMR1;REV__nc|ENSG00000087053|Q13614-2|MTMR2	REV__nc|ENSG00000087053|Q13614-2|MTMR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7794494628906	2	504.777039	1007.53953	0.30242	0.00015265	2.8078	0.0014173	3.1102	0.00157	504.7794229054757	69.1	2.4316	69.172	68.459	70.891	0.071938					178	87	3	0	0	0	0.14099	1	17410	17410		42.095	6.0504	2	1083100	+		24221	13984;17619;13642	13814	13815	30358	30358		988			0.03605693264751153
LMLMALSTL	9	Oxidation (M)	_LMLM(Oxidation (M))ALSTL_		LMLM(1)ALSTL		LM(-42)LM(42)ALSTL	0	0	1			REV__nc|ENSG00000171100|Q13496-2|MTM1;REV__nc|ENSG00000063601|Q13613-2|MTMR1;REV__nc|ENSG00000087053|Q13614-2|MTMR2	REV__nc|ENSG00000087053|Q13614-2|MTMR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7793884277344	2	504.777039	1007.53953	0.27767	0.00014016	2.9134	0.0014706	3.1911	0.0016108	504.77941458282083	69.321	2.7423	69.299	68.065	70.807	-0.022087					168	98	2	0	0	0	0.062246	1	17425	17425		48.346	8.3961	2	970480	+		24222	13984;17619;13642	13814	13815	30359	30359		988			0.03605693264751153
LMLNHFVKPG	10	Unmodified	_LMLNHFVKPG_					0	0	0			REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3207397460938	2	578.320794	1154.62703	0.38603	0.00022325	0.33455	0.00019348	0.72057	0.00041672	578.3207795532456	82.408	2.4147	82.387	81.478	83.892	-0.020584					239	99	3	0	0	0	0.38515	1	21355	21355		6.2058	1.4498	1	1098200	+		24223	15816	13815	13816	30360	30360					0.055906552505121
LMLNLSSLNP	10	Oxidation (M)	_LM(Oxidation (M))LNLSSLNP_		LM(1)LNLSSLNP		LM(44)LNLSSLNP	0	0	1			REV__ENST00000377902.5_1_9:36249201-36258352:-|nuORF	REV__ENST00000377902.5_1_9:36249201-36258352:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.30029296875	2	559.299724	1116.5849	0.22146	0.00012386	-0.48711	-0.00027244	-0.26565	-0.00014858	559.2994547001109	81.975	0.78834	82.044	81.779	82.568	0.068993					59	33	2	0	0	0	0.11961	1	21354	21354		43.772	10.987	1	600740	+		24224	20511	13816	13817	30361	30361		1007			0.03126635051512494
LMLNLSSLNP	10	Oxidation (M)	_LM(Oxidation (M))LNLSSLNP_		LM(1)LNLSSLNP		LM(52)LNLSSLNP	0	0	1			REV__ENST00000377902.5_1_9:36249201-36258352:-|nuORF	REV__ENST00000377902.5_1_9:36249201-36258352:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2998657226562	2	559.299724	1116.5849	0.3202	0.00017909	-0.19758	-0.00011051	0.12262	6.858E-05	559.2996178590072	82.153	0.68289	82.129	81.831	82.513	-0.02404					44	26	2	0	0	0	0.083722	1	21420	21420		51.63	11.68	1	519410	+		24225	20511	13816	13817	30362	30362		1007			0.03126635051512494
LMMKVHKS	8	Unmodified	_LMMKVHKS_					0	0	0			REV__nc|ENSG00000122420|P43088-6|PTGFR	REV__nc|ENSG00000122420|P43088-6|PTGFR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7535400390625	2	487.269716	972.524878	0.065864	3.2094E-05	0.031415	1.5308E-05	0.09728	4.7402E-05	487.26939996476005	15.796	0.35345	15.686	15.517	15.871	-0.10981					18	11	2	0	0	0	0.34408	1	1094	1094		2.3027	0	1	44505	+		24226	15156	13817	13818	30363	30363					0.037516659072707625
LMMLYPILF	9	Unmodified	_LMMLYPILF_					0	0	0			REV__ENSG00000165970|ENST00000525748|SLC6A5	REV__ENSG00000165970|ENST00000525748|SLC6A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2890014648438	2	570.813425	1139.6123	0.13142	7.5019E-05	3.8873	0.0022189	4.0187	0.0022939	571.318763251325	66.698	0.33051	66.684	66.511	66.842	-0.013596					17	11	2	0	0	0	0.24542	1	16710	16710		14.582	1.0738	1	122240	+		24227	17283	13818	13819	30364	30364					0.048074470581696005
LMNHTKGKIMV	11	Unmodified	_LMNHTKGKIMV_					0	0	0		ENSG00000181378|ENST00000341552|CFAP65;nc|ENSG00000181378|Q6ZU64-4|CFAP65;nc|ENSG00000181378|Q6ZU64-5|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.5585021972656	3	424.570271	1270.68898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.085	1	46.145	45.645	46.645	0.059834								0	0	0	0.36137	1	10352	10352		4.7159	2.6299	1				24228	7231	13819	13820	30365	30365					0.06446638607326349
LMNLTVSILG	10	Unmodified	_LMNLTVSILG_					0	0	0			REV__nc|ENSG00000073737|Q9BPW9-4|DHRS9	REV__nc|ENSG00000073737|Q9BPW9-4|DHRS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7890625	2	530.807185	1059.59982	0.41335	0.00021941	-0.48012	-0.00025485	-0.066777	-3.5445E-05	530.8068643940288	73.395	0.39351	73.395	73.133	73.527	0					17	13	2	0	0	0	0.33268	1	18696	18696		15.847	3.3156	1	55941	+		24229	22897	13820	13821	30366	30366					0.07240126919487011
LMPAKPRK	8	Unmodified	_LMPAKPRK_					0	0	0			REV__ENST00000522587.5_1_2:46769468-46769663:-|nuORF	REV__ENST00000522587.5_1_2:46769468-46769663:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2474365234375	2	470.791672	939.568792	-0.71326	-0.0003358	-1.1347	-0.00053422	-1.848	-0.00087002	470.79090326388035	34.383	0.47226	34.449	34.203	34.676	0.06636					36	16	3	0	0	0	0.344	1	6827	6827		2.5775	0.27475	1	142050	+		24230	21918	13821	13822	30367	30367					0.09659018395916519
LMPILKFV	8	Unmodified	_LMPILKFV_					0	0	0			REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.8012390136719	2	480.801174	959.587796	0.41065	0.00019744	-0.2164	-0.00010404	0.19425	9.3396E-05	480.8010393458865	84.963	1.9591	84.963	84.47	86.429	0					241	74	6	0	0	0	0.45942	3	22467	22467;22519;22590		2.5775	0	1	13323000	+		24231	13952	13822	13823	30368;30369;30370	30368					0.1063855496696533
LMPILKFV	8	Unmodified	_LMPILKFV_					0	0	0			REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.80108642578125	2	480.801174	959.587796	0.46042	0.00022137	-0.34076	-0.00016384	0.11966	5.7532E-05	480.80098463877744	84.858	1.8905	84.939	84.422	86.312	0.080879					254	72	6	0	0	0	0.45942	2	22424	22424;22473		2.5775	0	1	12069000	+		24232	13952	13822	13823	30371;30372	30371					0.1063855496696533
LMPILKFV	8	Unmodified	_LMPILKFV_					0	0	0			REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.8010559082031	2	480.801174	959.587796	0.48179	0.00023164	-0.33288	-0.00016005	0.14891	7.1594E-05	480.80100077167305	84.966	1.74	84.953	84.385	86.125	-0.01284					228	67	6	0	0	0	0.45942	2	22443	22443;22505		2.5775	0	1	15007000	+		24233	13952	13822	13823	30373;30374	30373					0.1063855496696533
LMQDTHKQL	9	Unmodified	_LMQDTHKQL_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.29052734375	2	557.289691	1112.56483	0.34459	0.00019204	-0.96362	-0.00053702	-0.61903	-0.00034498	557.2893292650695	70.673	0.86668	70.734	70.406	71.273	0.060783					111	30	6	0	0	0	0.24581	1	17872	17872		16.942	16.942	1	2846500			24234	4198	13823	13824	30375	30375					0.013048841115278265
LMQSHPLY	8	Unmodified	_LMQSHPLY_					0	0	0		ENSG00000108375|ENST00000407977|RNF43;nc|ENSG00000108375|Q68DV7-4|RNF43	ENSG00000108375|ENST00000407977|RNF43	ENSG00000108375|ENST00000407977|RNF43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7502136230469	2	494.74967	987.484787	0.35062	0.00017347	0.50171	0.00024822	0.85233	0.00042169	494.7499665699945	67.066	0.6165	67.145	66.899	67.515	0.078041					32	21	2	0	0	0	0.25425	1	16827	16827		36.044	3.9272	1	295480			24235	2178	13824	13825	30376	30376					-0.00945557491661475
LMQSHPLY	8	Unmodified	_LMQSHPLY_					0	0	0		ENSG00000108375|ENST00000407977|RNF43;nc|ENSG00000108375|Q68DV7-4|RNF43	ENSG00000108375|ENST00000407977|RNF43	ENSG00000108375|ENST00000407977|RNF43	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	494.74967	987.484787	0.3688	0.00018246	0.86148	0.00042622	1.2303	0.00060868	494.75008970222024	67.238	0.54094	67.238	66.909	67.45	0	0.05628	0.0001809	NaN	36.044	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284700			24236	2178	13824	13825							-0.00945557491661475
LMQSHPLY	8	Unmodified	_LMQSHPLY_					0	0	0		ENSG00000108375|ENST00000407977|RNF43;nc|ENSG00000108375|Q68DV7-4|RNF43	ENSG00000108375|ENST00000407977|RNF43	ENSG00000108375|ENST00000407977|RNF43	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	494.74967	987.484787	0.18203	9.0062E-05	0.66532	0.00032917	0.84736	0.00041923	494.7500766303741	67.18	0.50212	67.164	66.921	67.423	-0.016296	-0.01858	-1.3199E-05	NaN	36.044	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264310			24237	2178	13824	13825							-0.00945557491661475
LMRPSGVSL	9	Unmodified	_LMRPSGVSL_					0	0	0			REV__ENST00000251546.8_1_1:11721362-11721698:+|nuORF	REV__ENST00000251546.8_1_1:11721362-11721698:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7821044921875	2	480.27077	958.526987	0.35002	0.00016811	-0.78056	-0.00037488	-0.43053	-0.00020677	480.2702375262301	21.266	0.53971	21.213	21.005	21.544	-0.05291					24	18	2	0	0	0	0.23007	1	2792	2792		19.257	3.4098	1	64297	+		24238	19527	13825	13826	30377	30377					0.04606417916738792
LMRTREATI	9	Unmodified	_LMRTREATI_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8060913085938	2	545.805508	1089.59646	0.43206	0.00023582	0.44851	0.0002448	0.88057	0.00048062	545.8057546802056	65.465	1.5248	65.554	65.164	66.689	0.088882					109	55	3	0	0	0	0.1558	1	16336	16336		41.956	3.78	1	1784900	+		24239	17609	13826	13827	30378	30378					0.055248768654792
LMRTREATI	9	Unmodified	_LMRTREATI_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.80615234375	2	545.805508	1089.59646	0.68396	0.00037331	0.13599	7.4222E-05	0.81994	0.00044753	545.8055862918497	65.579	1.3936	65.567	65.148	66.541	-0.01133					100	50	3	0	0	0	0.07944	1	16354	16354		41.956	5.8285	1	2156400	+		24240	17609	13826	13827	30379	30379					0.055248768654792
LMSLIINTF	9	Oxidation (M)	_LM(Oxidation (M))SLIINTF_		LM(1)SLIINTF		LM(210)SLIINTF	0	0	1		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;HSP90AA1|p.K314Efs*5|1|0.28|ENSG00000080824|chr14:102084721-102084722|TT/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;HSP90AB1|p.I483Hfs*7|1|0.32|ENSG00000096384|chr6:44251866-44251867|-/C|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P	nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;nc|ENSG00000205940|Q58FF8|HSP90AB2P	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2942504882812	2	534.293911	1066.57327	0.82164	0.000439	0.024125	1.289E-05	0.84577	0.00045189	534.2940152792365	77.634	3.3109	77.634	77.036	80.346	0					318	126	5	0	0	0	1.7377E-16	5	20024	20024;20079;20127;20177;20229		206.75	130.99	1	4429400			24241	12596;1466;12916	13827	13828	30380;30381;30382;30383;30384	30380		181			0.04264438028144468
LMSLIINTF	9	Oxidation (M)	_LM(Oxidation (M))SLIINTF_		LM(1)SLIINTF		LM(210)SLIINTF	0	0	1		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;HSP90AA1|p.K314Efs*5|1|0.28|ENSG00000080824|chr14:102084721-102084722|TT/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;HSP90AB1|p.I483Hfs*7|1|0.32|ENSG00000096384|chr6:44251866-44251867|-/C|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P	nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;nc|ENSG00000205940|Q58FF8|HSP90AB2P	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.294189453125	2	534.293911	1066.57327	0.63721	0.00034046	0.12389	6.6195E-05	0.7611	0.00040665	534.2940788637019	77.632	3.4543	77.688	76.982	80.436	0.055412					297	133	5	0	0	0	1.7377E-16	6	20042	19994;20042;20082;20126;20178;20227		206.75	130.99	1	4452200			24242	12596;1466;12916	13827	13828	30385;30386;30387;30388;30389;30390	30386		181			0.04264438028144468
LMSLIINTF	9	Oxidation (M)	_LM(Oxidation (M))SLIINTF_		LM(1)SLIINTF		LM(220)SLIINTF	0	0	1		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;HSP90AA1|p.K314Efs*5|1|0.28|ENSG00000080824|chr14:102084721-102084722|TT/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;HSP90AB1|p.I483Hfs*7|1|0.32|ENSG00000096384|chr6:44251866-44251867|-/C|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P	nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;nc|ENSG00000205940|Q58FF8|HSP90AB2P	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2941284179688	2	534.293911	1066.57327	0.89632	0.0004789	-0.061965	-3.3107E-05	0.83435	0.00044579	534.2939782767509	77.684	3.4253	77.653	77.045	80.471	-0.031334					296	129	5	0	0	0	2.4232E-17	6	20036	19987;20036;20086;20128;20179;20229		223.81	148.88	1	4522100			24243	12596;1466;12916	13827	13828	30391;30392;30393;30394;30395;30396	30392		181			0.04264438028144468
LMSSSEEEF	9	Unmodified	_LMSSSEEEF_					0	0	0		ENST00000555955.3_1_14:61113003-61118660:-|nuORF;ENSG00000126778|ENST00000645694|SIX1	ENST00000555955.3_1_14:61113003-61118660:-|nuORF	ENST00000555955.3_1_14:61113003-61118660:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.313720703125	2	529.720972	1057.42739	-0.018373	-9.7324E-06	2.262	0.0011982	2.2436	0.0011885	529.7219078028004	65.295	0.59676	65.384	65.135	65.732	0.088882					32	21	2	0	0	0	0.24739	1	16211	16211		8.5933	0.68312	1	149230			24244	3289	13828	13829	30397	30397					-0.09902489278556459
LMTLTIVKGA	10	Unmodified	_LMTLTIVKGA_					0	0	0		ENSG00000187391|ENST00000354212|MAGI2;nc|ENSG00000187391|Q86UL8-2|MAGI2;ENST00000520379.2_1_7:77814916-78119132:-|nuORF	ENSG00000187391|ENST00000354212|MAGI2	ENSG00000187391|ENST00000354212|MAGI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.75244140625	2	523.817553	1045.62055	0.88193	0.00046197	-2.8328	-0.0014839	-1.9509	-0.0010219	523.8157306773555	47.572	0.23166	47.616	47.43	47.662	0.04332					12	8	2	0	0	0	0.31143	1	10747	10747		17.113	2.2746	1	125020			24245	7677	13829	13830	30398	30398					0.09956717299155571
LMTVQKTLK	9	Unmodified	_LMTVQKTLK_					0	0	0			REV__nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	REV__nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3055419921875	2	531.323002	1060.63145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.07	1	70.07	69.57	70.57	0								0	0	0	0.21009	1	17740	17740		19.257	9.0736	1		+		24246	17035	13830	13831	30399	30399					0.1035611967342902
LMTVVGTI	8	Unmodified	_LMTVVGTI_					0	0	0		ENSG00000108375|ENST00000407977|RNF43;nc|ENSG00000108375|Q68DV7-4|RNF43;nc|ENSG00000108375|Q68DV7-3|RNF43;nc|ENSG00000108375|Q68DV7-2|RNF43	ENSG00000108375|ENST00000407977|RNF43	ENSG00000108375|ENST00000407977|RNF43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.9009704589844	2	417.243689	832.472826	0.25406	0.000106	0.025719	1.0731E-05	0.27978	0.00011674	417.24371735198685	37.901	0.70901	37.992	37.555	38.264	0.090881					45	25	3	0	0	0	0.34185	1	7843	7843		10.183	0	1	507110			24247	2178	13831	13832	30400	30400					0.04988825765178717
LMVCHMAALQ	10	Unmodified	_LMVCHMAALQ_					0	0	0			REV__ENST00000591524.1_1_18:54424563-54448991:+|nuORF	REV__ENST00000591524.1_1_18:54424563-54448991:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.297607421875	2	558.771765	1115.52898	0.26587	0.00014856	3.5573	0.0019877	3.8232	0.0021363	558.7743225880434	68.35	0.5948	68.422	68.134	68.729	0.071945					38	21	2	0	0	0	0.31165	1	17270	17270		15.847	4.2069	1	467220	+		24248	14061	13832	13833	30401	30401					-0.024166126613181405
LMVKSLWQ	8	Unmodified	_LMVKSLWQ_					0	0	0			REV__ENST00000369578.6_1_6:87925633-87925750:+|nuORF	REV__ENST00000369578.6_1_6:87925633-87925750:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7746276855469	2	502.783513	1003.55247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.707	1	49.707	49.207	50.207	0								0	0	0	0.33122	1	11472	11472		23.148	9.6405	1		+		24249	20359	13833	13834	30402	30402					0.050838924391541696
LMWVLVTL	8	Unmodified	_LMWVLVTL_					0	0	0		nc|ENSG00000197520|A6PVY3-2|FAM177B	nc|ENSG00000197520|A6PVY3-2|FAM177B	nc|ENSG00000197520|A6PVY3-2|FAM177B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7997741699219	2	487.790807	973.56706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.426	1	84.503	84.003	85.003	0.077095								0	0	0	0.26566	1	22125	22125		34.187	0	1				24250	12898	13834	13835	30403	30403					0.07921964587308139
LMYAKWAF	8	Unmodified	_LMYAKWAF_					0	0	0		ENSG00000152086|ENST00000312988|TUBA3E	ENSG00000152086|ENST00000312988|TUBA3E	ENSG00000152086|ENST00000312988|TUBA3E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8289794921875	2	515.264956	1028.51536	0.35047	0.00018058	2.4143	0.001244	2.7648	0.0014246	515.266599503188	73.101	0.29002	73.101	72.961	73.251	0					14	9	2	0	0	0	0.34147	1	18666	18666		11.114	0.93107	1	73483			24251	4999	13835	13836	30404	30404					0.002242208933694201
LMYPGGGLL	9	Unmodified	_LMYPGGGLL_					0	0	0			REV__ENSG00000103067|ENST00000473183|ESRP2	REV__ENSG00000103067|ENST00000473183|ESRP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.7491149902344	2	460.749139	919.483725	0.13139	6.0536E-05	0.075712	3.4884E-05	0.2071	9.5421E-05	460.74912462682096	72.903	1.1516	72.903	72.48	73.632	0					89	41	3	0	0	0	0.11229	2	18600	18600;18652		36.466	2.2788	1	1524000	+		24252	14354	13836	13837	30405;30406	30405					0.020762281394695492
LMYPGGGLL	9	Unmodified	_LMYPGGGLL_					0	0	0			REV__ENSG00000103067|ENST00000473183|ESRP2	REV__ENSG00000103067|ENST00000473183|ESRP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.74908447265625	2	460.749139	919.483725	0.090172	4.1547E-05	0.081585	3.759E-05	0.17176	7.9137E-05	460.74911607966504	72.815	1.1235	72.869	72.51	73.633	0.053841					92	40	3	0	0	0	0.21902	2	18632	18532;18632		20.871	14.582	1	1386400	+		24253	14354	13836	13837	30407;30408	30408					0.020762281394695492
LMYSCMDLY	9	Unmodified	_LMYSCMDLY_					0	0	0		ENST00000280200.8_3_18:67531437-67531521:-|nuORF	ENST00000280200.8_3_18:67531437-67531521:-|nuORF	ENST00000280200.8_3_18:67531437-67531521:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.295166015625	2	569.734514	1137.45447	0.34861	0.00019862	0.94126	0.00053627	1.2899	0.00073489	569.7350863715384	53.836	0.47092	53.892	53.714	54.185	0.056259					35	17	3	0	0	0	0.25291	1	12692	12692		9.3474	0	1	355240			24254	9112	13837	13838	30409	30409					-0.10875420263369051
LMYSCMDLY	9	Unmodified	_LMYSCMDLY_					0	0	0		ENST00000280200.8_3_18:67531437-67531521:-|nuORF	ENST00000280200.8_3_18:67531437-67531521:-|nuORF	ENST00000280200.8_3_18:67531437-67531521:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.734514	1137.45447	0.49248	0.00028058	0.52703	0.00030027	1.0195	0.00058085	569.7347824998745	53.928	0.46412	53.928	53.698	54.162	0	-0.04474	-0.00014786	NaN	9.3474	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261150			24255	9112	13837	13838							-0.10875420263369051
LMYSCMDLY	9	Unmodified	_LMYSCMDLY_					0	0	0		ENST00000280200.8_3_18:67531437-67531521:-|nuORF	ENST00000280200.8_3_18:67531437-67531521:-|nuORF	ENST00000280200.8_3_18:67531437-67531521:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	569.734514	1137.45447	0.40988	0.00023352	0.47319	0.0002696	0.88307	0.00050312	569.7345422526778	54.114	0.4423	54.099	53.919	54.361	-0.015923	0.12541	-0.0002092	NaN	9.3474	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235480			24256	9112	13837	13838							-0.10875420263369051
LMYVLWLF	8	Unmodified	_LMYVLWLF_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.6708984375	2	542.798632	1083.58271	0.64228	0.00034863	-1.9834	-0.0010766	-1.3411	-0.00072795	542.7974696436804	95.41	0.1144	95.406	95.339	95.454	-0.0038147					13	9	2	0	0	0	0.34297	1	25468	25468		6.3541	1.0572	1	95922			24257	936	13838	13839	30410	30410					0.04426251104359835
LNAAVLYKK	9	Unmodified	_LNAAVLYKK_					0	0	0			REV__ENSG00000163781|ENST00000260810|TOPBP1	REV__ENSG00000163781|ENST00000260810|TOPBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.27825927734375	2	510.316035	1018.61752	0.37215	0.00018991	-2.8631	-0.0014611	-2.4909	-0.0012711	510.3142568208262	20.146	0.39651	20.03	19.729	20.126	-0.11592					19	13	2	0	0	0	0.25988	1	2440	2440		3.9444	1.3669	1	32968	+		24258	17087	13839	13840	30411	30411					0.10895210236651565
LNAPRSHRH	9	Unmodified	_LNAPRSHRH_					0	0	0		ENST00000368097.8_1_1:159890268-159895267:-|nuORF	ENST00000368097.8_1_1:159890268-159895267:-|nuORF	ENST00000368097.8_1_1:159890268-159895267:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.8156127929688	2	544.29703	1086.57951	0.30484	0.00016592	-0.28771	-0.0001566	0.01713	9.3239E-06	544.2968691971075	12.367	0.46799	12.271	12.178	12.646	-0.096607					24	15	3	0	0	0	0.29176	1	128	128		10.074	1.4806	1	402170			24259	9751	13840	13841	30412	30412					0.039681370945800154
LNAPTRNL	8	Unmodified	_LNAPTRNL_					0	0	0			REV__nc|ENSG00000100626|Q8N428-2|GALNT16	REV__nc|ENSG00000100626|Q8N428-2|GALNT16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7587585449219	2	449.758884	897.503215	0.56916	0.00025598	-0.57512	-0.00025866	-0.0059582	-2.6797E-06	449.75853408102415	37.151	1.1115	37.151	36.844	37.956	0					94	39	4	0	0	0	0.3474	1	7691	7691		25.399	0	1	1276400	+		24260	14217	13841	13842	30413	30413					0.05036320474573586
LNCKSSLVTVL	11	Unmodified	_LNCKSSLVTVL_					0	0	0		ENST00000265192.8_1_5:138704483-138704675:+|nuORF	ENST00000265192.8_1_5:138704483-138704675:+|nuORF	ENST00000265192.8_1_5:138704483-138704675:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.8379516601562	2	588.836474	1175.65839	0.23068	0.00013583	0.94157	0.00055443	1.1722	0.00069026	588.8370298919326	29.017	0.48516	29.031	28.789	29.274	0.013475					38	17	3	0	0	0	0.46819	1	5186	5186		2.2828	0.63015	1	192180			24261	9041	13842	13843	30414	30414					0.07759183493976707
LNCKWRRQ	8	Unmodified	_LNCKWRRQ_					0	0	0			REV__nc|ENSG00000138802|O95487-2|SEC24B	REV__nc|ENSG00000138802|O95487-2|SEC24B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3164672851562	2	552.298185	1102.58182	0.404	0.00022313	-0.22384	-0.00012363	0.18016	9.9504E-05	552.2979317944965	62.394	1.2626	62.385	61.979	63.242	-0.0085564					137	46	5	0	0	0	0.35375	1	15485	15485		24.674	0	1	6822400	+		24262	15960	13843	13844	30415	30415					0.034628495080141874
LNCSYAPMLI	10	Carbamidomethyl (C)	_LNC(Carbamidomethyl (C))SYAPMLI_	LNC(1)SYAPMLI		LNC(56)SYAPMLI		0	1	0			REV__ENST00000560942.2_3_15:69726998-69727352:-|nuORF	REV__ENST00000560942.2_3_15:69726998-69727352:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.2885131835938	2	591.288302	1180.56205	0.43413	0.0002567	-0.05864	-3.4673E-05	0.37549	0.00022203	591.2883499489615	70.382	0.85317	70.382	70.049	70.902	0					91	30	4	0	0	0	0.062954	1	17805	17805		56.177	8.4284	1	2803400	+		24263	22300	13844	13845	30416	30416	35				-0.021007073376267726
LNCSYAPMLI	10	Carbamidomethyl (C)	_LNC(Carbamidomethyl (C))SYAPMLI_	LNC(1)SYAPMLI		LNC(63)SYAPMLI		0	1	0			REV__ENST00000560942.2_3_15:69726998-69727352:-|nuORF	REV__ENST00000560942.2_3_15:69726998-69727352:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.2889404296875	2	591.288302	1180.56205	0.4186	0.00024751	-0.15774	-9.3272E-05	0.26086	0.00015424	591.2884241756541	70.338	0.8895	70.398	70.127	71.017	0.060783					100	31	5	0	0	0	0.033744	1	17788	17788		62.573	12.64	1	2811700	+		24264	22300	13844	13845	30417	30417	35				-0.021007073376267726
LNCSYAPMLI	10	Carbamidomethyl (C)	_LNC(Carbamidomethyl (C))SYAPMLI_	LNC(1)SYAPMLI		LNC(63)SYAPMLI		0	1	0			REV__ENST00000560942.2_3_15:69726998-69727352:-|nuORF	REV__ENST00000560942.2_3_15:69726998-69727352:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.2886352539062	2	591.288302	1180.56205	0.43578	0.00025767	-0.067595	-3.9968E-05	0.36819	0.0002177	591.288375598712	70.417	0.86438	70.393	70.106	70.971	-0.024872					96	30	4	0	0	0	0.033744	1	17854	17854		62.573	10.304	1	2937300	+		24265	22300	13844	13845	30418	30418	35				-0.021007073376267726
LNCYVPPESML	11	Unmodified	_LNCYVPPESML_					0	0	0			REV__nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	REV__nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5714111328125	3	422.535003	1264.58318	0.18215	7.6967E-05	3.1795	0.0013435	3.3617	0.0014204	422.8705806925642	45.582	0.18633	45.647	45.516	45.703	0.065048					10	6	2	0	0	0	0.32396	1	10175	10175		15.538	0	1	225300	+		24266	15184	13845	13846	30419	30419					-0.03852742028766443
LNDELLHYIL	10	Unmodified	_LNDELLHYIL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;ENST00000311694.7_1_12:112687934-112711582:-|nuORF;nc|ENSG00000173064|Q9Y4D8-3|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8957824707031	3	414.895806	1241.66559	0.40178	0.0001667	-0.42266	-0.00017536	-0.020879	-8.6627E-06	414.89564888552906	44.683	1.1656	44.758	44.389	45.554	0.07505					122	42	4	0	0	0	0.33753	1	10011	10011		14.957	5.1929	1	7457100			24267	6689	13846	13847	30420	30420					0.05442239366038848
LNDNRLLR	8	Unmodified	_LNDNRLLR_					0	0	0		ENST00000470525.1_1_3:48452064-48453367:-|nuORF;ENST00000485535.5_1_3:48445895-48454598:-|nuORF;nc|ENSG00000164050|O43157-2|PLXNB1;PLXNB1|p.N1992Tfs*76|1|0.36|ENSG00000164050|chr3:48409441-48409441|T/-|frameshift_variant;ENSG00000164050|ENST00000296440|PLXNB1	ENST00000470525.1_1_3:48452064-48453367:-|nuORF	ENST00000470525.1_1_3:48452064-48453367:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.272216796875	2	507.296165	1012.57778	0.089379	4.5341E-05	-0.71675	-0.00036361	-0.62737	-0.00031826	507.2957229480013	23.071	0.72326	22.983	22.736	23.459	-0.08761					51	25	3	0	0	0	0.33293	1	3388	3388		20.454	6.9457	1	180870			24268	5774	13847	13848	30421	30421					0.07199083285956931
LNDQWWKTF	9	Unmodified	_LNDQWWKTF_					0	0	0			REV__L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|8|1|sense	REV__L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|8|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.522216796875	3	413.204862	1236.59276	0.25072	0.0001036	-0.52353	-0.00021633	-0.27281	-0.00011273	413.204504930227	41.022	0.32104	41.112	40.952	41.273	0.090252					19	11	2	0	0	0	0.25202	1	8846	8846		10.8	4.5652	1	207540	+		24269	22787	13848	13849	30422	30422					-0.016074696367240904
LNDQWWKTF	9	Unmodified	_LNDQWWKTF_					0	0	0			REV__L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|8|1|sense	REV__L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|8|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5220642089844	3	413.204862	1236.59276	-0.047383	-1.9579E-05	-0.25051	-0.00010351	-0.29789	-0.00012309	413.20482606346553	40.954	0.32663	41.051	40.881	41.208	0.096626					16	11	2	0	0	0	0.25202	1	8798	8798		10.8	4.5652	1	157130	+		24270	22787	13848	13849	30423	30423					-0.016074696367240904
LNDQWWKTF	9	Unmodified	_LNDQWWKTF_					0	0	0			REV__L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|8|1|sense	REV__L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|8|1|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	413.204862	1236.59276	-0.17923	-7.4061E-05	0.60484	0.00024992	0.42561	0.00017586	413.20498580031193	41.36	0.32806	41.36	41.175	41.504	0	0.18561	0.00083276	NaN	10.8	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208880	+		24271	22787	13848	13849							-0.016074696367240904
LNDTPYKQK	9	Unmodified	_LNDTPYKQK_					0	0	0		OTOGL|p.N2038Tfs*20|1|0.02|ENSG00000165899|chr12:80358723-80358724|-/ACATATA|frameshift_variant;OTOGL|p.M2037Kfs*21|1|0.04|ENSG00000165899|chr12:80358721-80358722|-/AAACAAT|frameshift_variant;ENSG00000165899|ENST00000547103|OTOGL	OTOGL|p.N2038Tfs*20|1|0.02|ENSG00000165899|chr12:80358723-80358724|-/ACATATA|frameshift_variant	OTOGL|p.N2038Tfs*20|1|0.02|ENSG00000165899|chr12:80358723-80358724|-/ACATATA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.7852783203125	2	553.795663	1105.57677	0.59134	0.00032748	-0.12331	-6.8289E-05	0.46803	0.00025919	553.7956260868606	32.557	0.50281	32.557	32.279	32.782	0					47	17	4	0	0	0	0.22188	1	6219	6219		20.454	0	1	325230			24272	6009	13849	13850	30424	30424					0.02820824126365551
LNDYLEAK	8	Unmodified	_LNDYLEAK_					0	0	0		ENST00000340589.4_1_4:89430402-89430654:-|nuORF	ENST00000340589.4_1_4:89430402-89430654:-|nuORF	ENST00000340589.4_1_4:89430402-89430654:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.6687316894531	2	483.250557	964.486562	-0.0057165	-2.7625E-06	-2.4445	-0.0011813	-2.4502	-0.0011841	483.2493262294754	34.198	0.39521	34.265	34.092	34.487	0.06636					22	13	2	0	0	0	0.34218	1	6785	6785		9.3474	0	1	69840			24273	9516	13850	13851	30425	30425					0.002897747979432097
LNDYLEAK	8	Unmodified	_LNDYLEAK_					0	0	0		ENST00000340589.4_1_4:89430402-89430654:-|nuORF	ENST00000340589.4_1_4:89430402-89430654:-|nuORF	ENST00000340589.4_1_4:89430402-89430654:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	483.250557	964.486562	-0.01385	-6.6929E-06	-2.8071	-0.0013565	-2.821	-0.0013632	483.2490184637653	34.337	0.42233	34.337	34.023	34.446	0	0.035888	-0.00012069	NaN	9.3474	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55572			24274	9516	13850	13851							0.002897747979432097
LNEEMEAWKF	10	Unmodified	_LNEEMEAWKF_					0	0	0		ENST00000467666.2_1_1:85961913-86042365:-|nuORF	ENST00000467666.2_1_1:85961913-86042365:-|nuORF	ENST00000467666.2_1_1:85961913-86042365:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.9294128417969	3	432.869151	1295.58562	0.27345	0.00011837	-1.2734	-0.00055122	-0.99996	-0.00043285	432.8687976091936	32.165	0.96506	32.207	31.941	32.906	0.042366					107	34	5	0	0	0	0.31942	1	6128	6128		6.1918	1.663	1	1394400			24275	10828	13851	13852	30426	30426					-0.05034570299471852
LNEEMEAWKF	10	Unmodified	_LNEEMEAWKF_					0	0	0		ENST00000467666.2_1_1:85961913-86042365:-|nuORF	ENST00000467666.2_1_1:85961913-86042365:-|nuORF	ENST00000467666.2_1_1:85961913-86042365:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.9295349121094	3	432.869151	1295.58562	-0.036622	-1.5853E-05	-1.0303	-0.00044599	-1.0669	-0.00046184	432.86891458072915	32.186	1.0277	32.23	31.894	32.921	0.044689					104	36	5	0	0	0	0.31942	1	6256	6256		6.1918	2.3155	1	1317500			24276	10828	13851	13852	30427	30427					-0.05034570299471852
LNEFHYLLP	9	Unmodified	_LNEFHYLLP_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.8237915039062	2	573.303124	1144.5917	0.39002	0.0002236	-0.12042	-6.9038E-05	0.2696	0.00015456	573.302848348816	75.062	0.69801	75.114	74.838	75.536	0.052368					27	25	2	0	0	0	0.24311	1	19332	19332		16.942	4.4107	1	95107	+		24277	16725	13852	13853	30428	30428					0.025183159943708233
LNEFHYLLP	9	Unmodified	_LNEFHYLLP_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.2810668945312	2	573.303124	1144.5917	0.67276	0.0003857	2.3637	0.0013551	3.0364	0.0017408	573.3043342461851	77.543	0.58177	77.511	77.287	77.869	-0.031334					38	20	3	0	0	0	0.24311	1	19983	19983		16.942	1.0951	1	193990	+		24278	16725	13852	13853	30429	30429					0.025183159943708233
LNELYTRF	8	Unmodified	_LNELYTRF_					0	0	0		ENSG00000152402|ENST00000526355|GUCY1A2;nc|ENSG00000152402|P33402-3|GUCY1A2;nc|ENSG00000152402|P33402-2|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.75537109375	2	528.279649	1054.54475	0.91641	0.00048412	-0.76934	-0.00040643	0.14707	7.7694E-05	528.2794164186702	56.34	0.83584	56.34	56.101	56.937	0					38	30	2	0	0	0	0.33245	1	13633	13633		8.5933	0.68312	1	876740			24279	5018	13853	13854	30430	30430					0.0196545644323578
LNERRGGVL	9	Unmodified	_LNERRGGVL_					0	0	0			REV__ENST00000286614.10_1_8:89058997-89068400:-|nuORF	REV__ENST00000286614.10_1_8:89058997-89068400:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2723388671875	2	507.296165	1012.57778	0.22979	0.00011657	-0.73559	-0.00037316	-0.5058	-0.00025659	507.2957709567365	23.124	0.71049	23.08	22.817	23.528	-0.044867					38	25	2	0	0	0	0.24993	1	3394	3394		13.042	1.4022	1	155190	+		24280	19736	13854	13855	30431	30431					0.071990832859683
LNFKTKVNFQ	10	Unmodified	_LNFKTKVNFQ_					0	0	0		ENST00000464463.5_1_X:13780479-13780524:+|nuORF	ENST00000464463.5_1_X:13780479-13780524:+|nuORF	ENST00000464463.5_1_X:13780479-13780524:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2099609375	3	413.567912	1237.68191	0.10594	4.3814E-05	0.96416	0.00039874	1.0701	0.00044256	413.5682840895595	26.15	0.90324	26.111	25.843	26.746	-0.038671					56	31	2	0	0	0	0.31867	1	4270	4270		2.8433	0	1	228490			24281	10785	13855	13856	30432	30432					0.07257365322811893
LNFMHMNLP	9	Unmodified	_LNFMHMNLP_					0	0	0			REV__COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	REV__COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.7826538085938	2	558.77008	1115.52561	0.21732	0.00012143	1.2319	0.00068834	1.4492	0.00080977	559.2716732017453	69.889	0.37637	69.867	69.673	70.049	-0.022079					27	13	3	0	0	0	0.1669	1	17661	17661		28.487	6.7402	1	150940	+		24282	13240	13856	13857	30433	30433					-0.027535394436654315
LNFTKTSHS	9	Unmodified	_LNFTKTSHS_					0	0	0			REV__ENST00000335791.9_1_9:130670493-130670625:-|nuORF	REV__ENST00000335791.9_1_9:130670493-130670625:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3111572265625	2	517.766906	1033.51926	0.045355	2.3483E-05	0.38908	0.00020145	0.43443	0.00022493	517.7684545144883	13.481	0.56836	13.481	13.254	13.822	0					49	19	4	0	0	0	0.26031	1	399	399		3.5965	0	1	301510	+		24283	20067	13857	13858	30434	30434					0.0038398192079966975
LNFTKTSHS	9	Unmodified	_LNFTKTSHS_					0	0	0			REV__ENST00000335791.9_1_9:130670493-130670625:-|nuORF	REV__ENST00000335791.9_1_9:130670493-130670625:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.311279296875	2	517.766906	1033.51926	-0.094454	-4.8905E-05	0.56481	0.00029244	0.47035	0.00024353	517.7684829542779	13.568	0.52693	13.501	13.302	13.829	-0.067496					51	18	4	0	0	0	0.25527	1	427	427		8.7454	3.5147	1	253600	+		24284	20067	13857	13858	30435	30435					0.0038398192079966975
LNGERAIH	8	Unmodified	_LNGERAIH_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1;CYP1B1|p.P253Rfs*25|1|0.16|ENSG00000138061|chr2:38074631-38074631|G/-|frameshift_variant	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.24957275390625	2	455.248683	908.482814	-0.15743	-7.1671E-05	1.2247	0.00055756	1.0673	0.00048589	455.24905043112955	15.118	0.50336	15.118	14.845	15.348	0					34	17	2	0	0	0	0.42077	1	928	928		15.847	1.9411	1	127700			24285	4110	13858	13859	30436	30436					0.024911498147389466
LNGHCSSF	8	Unmodified	_LNGHCSSF_					0	0	0		ENST00000478155.5_1_2:1657420-1657468:-|nuORF	ENST00000478155.5_1_2:1657420-1657468:-|nuORF	ENST00000478155.5_1_2:1657420-1657468:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.2134704589844	2	432.68707	863.359587	-0.062801	-2.7173E-05	-0.29901	-0.00012938	-0.36181	-0.00015655	432.6868266941351	52.395	0.11108	52.395	52.354	52.465	0					5	3	2	0	0	0	0.34319	1	12317	12317		2.5775	0.51773	1	95456			24286	10966	13859	13860	30437	30437					-0.07755849628017586
LNGHCSSF	8	Unmodified	_LNGHCSSF_					0	0	0		ENST00000478155.5_1_2:1657420-1657468:-|nuORF	ENST00000478155.5_1_2:1657420-1657468:-|nuORF	ENST00000478155.5_1_2:1657420-1657468:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.21343994140625	2	432.68707	863.359587	-0.12835	-5.5536E-05	0.78184	0.00033829	0.65349	0.00028276	432.68732222688016	52.181	0.57022	52.181	51.784	52.354	0					34	20	2	0	0	0	0.34185	1	12272	12272		5.7604	3.1829	1	166600			24287	10966	13859	13860	30438	30438					-0.07755849628017586
LNGHCSSF	8	Unmodified	_LNGHCSSF_					0	0	0		ENST00000478155.5_1_2:1657420-1657468:-|nuORF	ENST00000478155.5_1_2:1657420-1657468:-|nuORF	ENST00000478155.5_1_2:1657420-1657468:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.21343994140625	2	432.68707	863.359587	-0.26426	-0.00011434	1.1608	0.00050227	0.89657	0.00038793	432.6873657781026	52.154	0.56716	52.153	51.902	52.469	-0.00081253					37	20	2	0	0	0	0.34185	1	12299	12299		5.7604	3.1829	1	166660			24288	10966	13859	13860	30439	30439					-0.07755849628017586
LNGNHLTKLSK	11	Unmodified	_LNGNHLTKLSK_					0	0	0		ENSG00000184564|ENST00000647374|SLITRK6	ENSG00000184564|ENST00000647374|SLITRK6	ENSG00000184564|ENST00000647374|SLITRK6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.1742248535156	3	408.906816	1223.69862	0.12705	5.1954E-05	1.3361	0.00054633	1.4631	0.00059828	409.24176839664744	17.061	0.31921	17	16.81	17.129	-0.060429					21	11	3	0	0	0	0.33274	1	1530	1530		1.9275	0	1	28182			24289	7461	13860	13861	30440	30440					0.09571866208739266
LNGQRKAIN	9	Unmodified	_LNGQRKAIN_					0	0	0			REV__ENSG00000152620|ENST00000381937|NADK2	REV__ENSG00000152620|ENST00000381937|NADK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2722473144531	2	507.296165	1012.57778	0.07905	4.0102E-05	-0.55187	-0.00027996	-0.47282	-0.00023986	507.29581190420936	22.962	0.51391	22.962	22.736	23.25	0					42	17	3	0	0	0	0.24311	1	3336	3336		16.942	0	1	134980	+		24290	16590	13861	13862	30441	30441					0.07199083285934194
LNIMSISDLN	10	Unmodified	_LNIMSISDLN_					0	0	0			REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.288818359375	2	560.289356	1118.56416	0.27594	0.00015461	-1.1888	-0.00066605	-0.91282	-0.00051144	560.2887493636928	73.983	0.34262	74.036	73.926	74.268	0.052361					18	11	2	0	0	0	0.19885	1	18939	18939		32.786	0	1	430300	+		24291	23117	13862	13863	30442	30442					0.009620446718599851
LNIMSISDLN	10	Unmodified	_LNIMSISDLN_					0	0	0			REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.289356	1118.56416	0.27719	0.00015531	-1.3826	-0.00077468	-1.1055	-0.00061937	560.2887119088517	74.216	0.42297	74.216	73.92	74.343	0	0.10374	0.00012035	NaN	32.786	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282380	+		24292	23117	13862	13863							0.009620446718599851
LNIMSISDLN	10	Unmodified	_LNIMSISDLN_					0	0	0			REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	REV__nc|ENSG00000182077|Q3KNS1|PTCHD3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	560.289356	1118.56416	0.26729	0.00014976	-1.8373	-0.0010294	-1.57	-0.00087966	560.7896141004303	74.116	0.5632	74.085	73.91	74.473	-0.030655	-0.027094	-0.00038913	NaN	32.786	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	445710	+		24293	23117	13862	13863							0.009620446718599851
LNISAWRPDAL	11	Unmodified	_LNISAWRPDAL_					0	0	0			REV__ENSG00000114331|ENST00000326793|ACAP2	REV__ENSG00000114331|ENST00000326793|ACAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.3436889648438	2	628.343312	1254.67207	0.12067	7.5819E-05	0.2866	0.00018008	0.40726	0.0002559	628.3434649611172	57.561	0.6425	57.544	57.285	57.928	-0.0172					50	23	3	0	0	0	0.40826	1	13930	13930		10.151	1.995	1	1166600	+		24294	14830	13863	13864	30443	30443					0.05492177317432834
LNITLDDVIR	10	Unmodified	_LNITLDDVIR_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.358642578125	2	586.337695	1170.66084	0.32316	0.00018948	-0.11215	-6.5759E-05	0.211	0.00012372	586.3377064823565	67.067	1.6756	67.067	66.266	67.942	0					139	58	4	0	0	0	0.21704	1	16578	16578		36.127	7.0454	1	2266000	+		24295	14737	13864	13865	30444	30444					0.08233355223273975
LNIVKDHIF	9	Unmodified	_LNIVKDHIF_					0	0	0		nc|ENSG00000176390|Q8IUI8-2|CRLF3;ENSG00000176390|ENST00000324238|CRLF3	nc|ENSG00000176390|Q8IUI8-2|CRLF3	nc|ENSG00000176390|Q8IUI8-2|CRLF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.758544921875	2	549.818941	1097.62333	0.50673	0.00027861	0.50067	0.00027528	1.0074	0.00055388	549.8183205737394	79.428	0.55	79.428	79.164	79.714	0					23	21	2	0	0	0	0.25202	1	20524	20524		10.824	1.4765	1	71890			24296	6924	13865	13866	30445	30445					0.07842308748308824
LNIYYGPLL	9	Unmodified	_LNIYYGPLL_					0	0	0			REV__nc|ENSG00000180764|A2A3N6|PIPSL	REV__nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.753662109375	2	533.302593	1064.59063	0.67324	0.00035904	0.42047	0.00022424	1.0937	0.00058328	533.3027625184618	83.637	0.47667	83.621	83.246	83.723	-0.016823					31	19	2	0	0	0	0.20651	1	21814	21814		26.884	7.6267	1	147460	+		24297	21477	13866	13867	30446	30446					0.060921016254724236
LNKASPIHKKM	11	Unmodified	_LNKASPIHKKM_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.8709106445312	2	633.871182	1265.72781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.927	1	96.997	96.497	97.497	0.070465								0	0	0	0.37796	1	25925	25925		2.086	0.60411	1		+		24298	15342	13867	13868	30447	30447					0.1055768723338133
LNKDLVIKV	9	Unmodified	_LNKDLVIKV_					0	0	0			REV__nc|ENSG00000188994|O60281-2|ZNF292	REV__nc|ENSG00000188994|O60281-2|ZNF292	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.3369750976562	2	521.336967	1040.65938	0.43173	0.00022508	-0.80819	-0.00042134	-0.37646	-0.00019626	521.3368905838558	43.004	0.68052	43.004	42.786	43.467	0					61	24	3	0	0	0	0.014206	1	9396	9396		72.968	12.894	1	827120	+		24299	18590	13868	13869	30448	30448					0.14067765925165077
LNKNYQLK	8	Unmodified	_LNKNYQLK_					0	0	0			REV__ENSG00000164961|ENST00000318410|WASHC5	REV__ENSG00000164961|ENST00000318410|WASHC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.28167724609375	2	510.795466	1019.57638	0.45371	0.00023175	-0.080581	-4.116E-05	0.37313	0.00019059	510.7949654126398	29.875	0.53957	29.875	29.686	30.225	0					26	18	2	0	0	0	0.34092	1	5449	5449		8.5933	0	1	83757	+		24300	17196	13869	13870	30449	30449					0.06737449197180467
LNKSEQFAL	9	Unmodified	_LNKSEQFAL_					0	0	0			REV__nc|ENSG00000123843|P20851-2|C4BPB	REV__nc|ENSG00000123843|P20851-2|C4BPB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8056030273438	2	525.284931	1048.55531	0.60765	0.00031919	3.6266	0.001905	4.2343	0.0022242	525.287600318794	63.61	0.22884	63.706	63.539	63.768	0.095722					11	7	2	0	0	0	0.22596	1	15727	15727		21.747	1.293	1	85754	+		24301	15201	13870	13871	30450	30450					0.03297439097673305
LNKTKVII	8	Unmodified	_LNKTKVII_					0	0	0		ENST00000595624.5_1_2:136774515-136774707:+|nuORF	ENST00000595624.5_1_2:136774515-136774707:+|nuORF	ENST00000595624.5_1_2:136774515-136774707:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.74591064453125	2	464.813128	927.611703	0.058436	2.7162E-05	-0.056037	-2.6047E-05	0.002399	1.1151E-06	464.81314049491226	28.982	0.24424	28.982	28.845	29.089	0					13	8	2	0	0	0	0.34337	1	5158	5158		2.3027	0	1	52143			24302	12224	13871	13872	30451	30451					0.1450011172498762
LNKVQRAQSIV	11	Unmodified	_LNKVQRAQSIV_					0	0	0			REV__nc|ENSG00000073614|P29375-2|KDM5A	REV__nc|ENSG00000073614|P29375-2|KDM5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.578369140625	3	419.254216	1254.74082	-0.068538	-2.8735E-05	0.70703	0.00029643	0.63849	0.00026769	419.25457030456323	23.27	0.66567	23.183	22.82	23.486	-0.08761					49	23	3	0	0	0	0.33303	1	3450	3450		2.4348	0.18206	1	128550	+		24303	13778	13872	13873	30452	30452					0.1236384161713886
LNKYLKLVE	9	Unmodified	_LNKYLKLVE_					0	0	0			REV__ENSG00000205707|ENST00000381356|ETFRF1	REV__ENSG00000205707|ENST00000381356|ETFRF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.3244018554688	2	560.342249	1118.66995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.03	1	76.999	76.499	77.499	-0.031334								0	0	0	0.21726	1	19849	19849		16.942	2.3606	1		+		24304	18998	13873	13874	30453	30453					0.11535748579603933
LNLDSIQPA	9	Unmodified	_LNLDSIQPA_					0	0	0		ENST00000473253.5_1_3:174581768-175298945:+|nuORF;ENSG00000177694|ENST00000454872|NAALADL2;nc|ENSG00000177694|Q58DX5-2|NAALADL2;ENST00000485853.5_1_3:174577149-174974391:+|nuORF	ENST00000473253.5_1_3:174581768-175298945:+|nuORF	ENST00000473253.5_1_3:174581768-175298945:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2797546386719	2	485.763832	969.513111	0.15329	7.4465E-05	1.7203	0.00083566	1.8736	0.00091012	485.7639026349064	26.697	0.22729	26.697	26.586	26.813	0					11	7	2	0	0	0	0.25202	1	4414	4414		10.824	0	1	38842			24305	7011	13874	13875	30454	30454					0.02713463689292439
LNLEALKQ	8	Unmodified	_LNLEALKQ_					0	0	0		nc|ENSG00000119979|Q8TCE6-2|DENND10;nc|ENSG00000221930|Q6NSW5|DENND10P1;ENST00000592932.1_1_X:129629132-129630203:+|nuORF;ENSG00000119979|ENST00000361432|DENND10	nc|ENSG00000119979|Q8TCE6-2|DENND10	nc|ENSG00000119979|Q8TCE6-2|DENND10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.263671875	2	464.776742	927.538931	-0.062045	-2.8837E-05	0.99765	0.00046369	0.93561	0.00043485	464.7772390486353	19.343	1.2068	19.227	18.919	20.126	-0.11592					61	41	2	0	0	0	0.45544	1	2278	2278		3.9444	0	1	74404			24306	2924	13875	13876	30455	30455					0.07226357931574512
LNLERLPLI	9	Unmodified	_LNLERLPLI_					0	0	0		ENST00000472667.1_1_2:170355634-170355844:+|nuORF	ENST00000472667.1_1_2:170355634-170355844:+|nuORF	ENST00000472667.1_1_2:170355634-170355844:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8426513671875	2	540.842416	1079.67028	0.57551	0.00031126	-0.25964	-0.00014043	0.31587	0.00017083	540.8422111641063	72.617	1.1993	72.671	72.326	73.525	0.053841					104	43	4	0	0	0	0.14076	1	18554	18554		32.305	1.6689	1	1454400			24307	10897	13876	13877	30456	30456					0.13363168299474637
LNLHRHLYL	9	Unmodified	_LNLHRHLYL_					0	0	0			REV__nc|ENSG00000165521|Q05BV3-4|EML5	REV__nc|ENSG00000165521|Q05BV3-4|EML5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8455200195312	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.57	1	114.57	114.07	115.07	0								0	0	0	0.26704	1	29722	29722		0.6015	0	1		+		24308	23072	13877	13878	30457	30457					0.09028222108099726
LNLHRHLYL	9	Unmodified	_LNLHRHLYL_					0	0	0			REV__nc|ENSG00000165521|Q05BV3-4|EML5	REV__nc|ENSG00000165521|Q05BV3-4|EML5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8457641601562	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.18	1	115.16	114.66	115.66	-0.020988								0	0	0	0.26704	1	29875	29875		0.6015	0	1		+		24309	23072	13877	13878	30458	30458					0.09028222108099726
LNLHRHLYL	9	Unmodified	_LNLHRHLYL_					0	0	0			REV__nc|ENSG00000165521|Q05BV3-4|EML5	REV__nc|ENSG00000165521|Q05BV3-4|EML5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8449096679688	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.35	1	115.33	114.83	115.83	-0.020988								0	0	0	0.26704	1	29917	29917		0.6015	0	1		+		24310	23072	13877	13878	30459	30459					0.09028222108099726
LNLHRHLYL	9	Unmodified	_LNLHRHLYL_					0	0	0			REV__nc|ENSG00000165521|Q05BV3-4|EML5	REV__nc|ENSG00000165521|Q05BV3-4|EML5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.84619140625	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.39	1	113.41	112.91	113.91	0.014824								0	0	0	0.26704	1	29502	29502		0.6015	0	1		+		24311	23072	13877	13878	30460	30460					0.09028222108099726
LNLKPAQLL	9	Unmodified	_LNLKPAQLL_					0	0	0		ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.27691650390625	2	505.32386	1008.63317	0.4276	0.00021608	-0.86588	-0.00043755	-0.43828	-0.00022147	505.3233947209024	57.398	0.30849	57.398	57.216	57.525	0					16	10	2	0	0	0	0.2451	1	13832	13832		6.7232	0	1	273760			24312	3624	13878	13879	30461	30461					0.12919496753693238
LNLMSTLGNR	10	Unmodified	_LNLMSTLGNR_					0	0	0		ENST00000298355.7_1_14:51562345-51562540:-|nuORF	ENST00000298355.7_1_14:51562345-51562540:-|nuORF	ENST00000298355.7_1_14:51562345-51562540:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8031616210938	2	559.802965	1117.59138	0.67603	0.00037844	-0.29043	-0.00016259	0.3856	0.00021586	559.8026503164484	37.487	1.1439	37.487	37.233	38.377	0					99	40	4	0	0	0	0.21126	1	7743	7743		31.268	0.6318	1	4230200			24313	9206	13879	13880	30462	30462					0.037285730028543185
LNLNEHIMQQK	11	Unmodified	_LNLNEHIMQQK_					0	0	0			REV__ENST00000371477.3_1_6:44361205-44361256:+|nuORF	REV__ENST00000371477.3_1_6:44361205-44361256:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.74853515625	3	456.57485	1366.70272	-0.043184	-1.9717E-05	0.17599	8.0355E-05	0.13281	6.0638E-05	456.57490344676427	17.617	0.49815	17.5	17.259	17.757	-0.11739					22	16	2	0	0	0	0.33236	1	1717	1717		4.4062	3.1913	1	47144	+		24314	20399	13880	13881	30463	30463					0.03403587640150363
LNLSERIPRVI	11	Unmodified	_LNLSERIPRVI_					0	0	0		ENSG00000138468|ENST00000394095|SENP7;nc|ENSG00000138468|Q9BQF6-2|SENP7	ENSG00000138468|ENST00000394095|SENP7	ENSG00000138468|ENST00000394095|SENP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.26971435546875	3	437.269866	1308.78777	-0.042906	-1.8761E-05	-0.3341	-0.00014609	-0.37701	-0.00016485	437.26973945838387	22.222	0.83512	22.121	21.888	22.723	-0.10034					77	30	4	0	0	0	0.3826	1	3085	3085		13.519	0	1	266510			24315	4155	13881	13882	30464	30464					0.14572701168253843
LNLVLWCRDGK	11	Unmodified	_LNLVLWCRDGK_					0	0	0		ENST00000261778.1_1_16:69117891-69118167:+|nuORF	ENST00000261778.1_1_16:69117891-69118167:+|nuORF	ENST00000261778.1_1_16:69117891-69118167:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.2341613769531	3	439.576302	1315.70708	0.048665	2.1392E-05	-0.568	-0.00024968	-0.51934	-0.00022829	439.57623177450756	16.942	0.65904	16.942	16.659	17.318	0					57	22	4	0	0	0	0.33287	1	1565	1565		2.8433	0.93691	1	152890			24316	8977	13882	13883	30465	30465					0.061850968537100925
LNLWIGVV	8	Unmodified	_LNLWIGVV_					0	0	0			REV__ENSG00000181481|ENST00000328381|RNF135	REV__ENSG00000181481|ENST00000328381|RNF135	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.264404296875	2	457.278921	912.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.547	1	84.534	84.034	85.034	-0.01284								0	0	0	0.37078	1	22157	22157		5.2307	0	1		+		24317	18151	13883	13884	30466	30466					0.08351867145154301
LNNHHVEQKGK	11	Unmodified	_LNNHHVEQKGK_					0	0	0		ENST00000237500.9_1_18:3262189-3272976:+|nuORF	ENST00000237500.9_1_18:3262189-3272976:+|nuORF	ENST00000237500.9_1_18:3262189-3272976:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.78009033203125	3	435.233704	1302.67928	0.030384	1.3224E-05	0.61508	0.0002677	0.64546	0.00028093	435.2342445359583	29.413	0.66753	29.425	29.218	29.886	0.012266					45	22	3	0	0	0	0.33296	1	5279	5279		0.40827	0	1	251520			24318	8876	13884	13885	30467	30467					0.04004909917830446
LNNRIRPFL	9	Unmodified	_LNNRIRPFL_					0	0	0		AluJb_dup39978|chr5:178234032-178234178:-|3.358778812917111|0.3200316985076762|3.39|531.0|8|3|sense	AluJb_dup39978|chr5:178234032-178234178:-|3.358778812917111|0.3200316985076762|3.39|531.0|8|3|sense	AluJb_dup39978|chr5:178234032-178234178:-|3.358778812917111|0.3200316985076762|3.39|531.0|8|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.8432006835938	2	571.843282	1141.67201	0.1847	0.00010562	-0.11937	-6.8258E-05	0.065337	3.7363E-05	571.8431283921279	40.847	0.49238	40.847	40.576	41.069	0					44	17	3	0	0	0	0.27532	1	8735	8735		12.532	0	1	520090			24319	30	13885	13886	30468	30468					0.10684222108102404
LNNYPYQKP	9	Unmodified	_LNNYPYQKP_					0	0	0			REV__ENST00000605113.1_1_17:57962763-57962907:+|nuORF	REV__ENST00000605113.1_1_17:57962763-57962907:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.7896118164062	2	568.790381	1135.56621	-0.18232	-0.0001037	-2.1465	-0.0012209	-2.3288	-0.0013246	568.7887575247918	12.658	0.3282	12.59	12.463	12.791	-0.067495					21	10	3	0	0	0	0.33276	1	193	193		3.9444	1.6417	1	49026	+		24320	17295	13886	13887	30469	30469					0.003848414719413995
LNNYPYQKP	9	Unmodified	_LNNYPYQKP_					0	0	0			REV__ENST00000605113.1_1_17:57962763-57962907:+|nuORF	REV__ENST00000605113.1_1_17:57962763-57962907:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	568.790381	1135.56621	-0.099701	-5.6709E-05	-2.1011	-0.0011951	-2.2008	-0.0012518	568.7890664286278	12.615	0.34887	12.615	12.498	12.847	0	0.036501	0.00024569	NaN	3.9444	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43099	+		24321	17295	13886	13887							0.003848414719413995
LNNYPYQKP	9	Unmodified	_LNNYPYQKP_					0	0	0			REV__ENST00000605113.1_1_17:57962763-57962907:+|nuORF	REV__ENST00000605113.1_1_17:57962763-57962907:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	568.790381	1135.56621	0.071076	4.0427E-05	-3.1048	-0.001766	-3.0337	-0.0017255	568.7889294374253	12.63	0.34715	12.531	12.353	12.7	-0.098831	-0.047905	-0.00089604	NaN	3.9444	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42913	+		24322	17295	13886	13887							0.003848414719413995
LNNYPYQKP	9	Unmodified	_LNNYPYQKP_					0	0	0			REV__ENST00000605113.1_1_17:57962763-57962907:+|nuORF	REV__ENST00000605113.1_1_17:57962763-57962907:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	568.790381	1135.56621	-0.18232	-0.0001037	-2.1465	-0.0012209	-2.3288	-0.0013246	568.7887575247918	12.658	0.3282	12.59	12.463	12.791	-0.067495	0.011404	0.0001941	NaN	3.9444	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49026	+		24323	17295	13886	13887							0.003848414719413995
LNPAEVEVTL	10	Unmodified	_LNPAEVEVTL_					0	0	0			REV__ENST00000434763.1_1_X:152869982-152870534:-|nuORF	REV__ENST00000434763.1_1_X:152869982-152870534:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7976684570312	2	542.797872	1083.58119	0.074706	4.055E-05	-0.2085	-0.00011318	-0.1338	-7.2625E-05	542.7976427020774	99.14	1.2866	99.14	98.646	99.933	0					453	162	4	0	0	0	0.40106	1	26611	26611		3.2813	0.28607	1	854180	+		24324	20986	13887	13888	30470	30470					0.04274288549299854
LNPALYLWL	9	Unmodified	_LNPALYLWL_					0	0	0			REV__ENST00000483825.5_1_1:167400597-167400867:-|nuORF	REV__ENST00000483825.5_1_1:167400597-167400867:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2981567382812	2	551.81841	1101.62227	0.48022	0.000265	-1.8533	-0.0010227	-1.373	-0.00075767	551.8176118379381	62.76	0.62826	62.856	62.52	63.148	0.095722					33	22	2	0	0	0	0.19839	1	15403	15403		28.487	0.85804	1	226180	+		24325	21524	13888	13889	30471	30471					0.07552094379411756
LNPDGKTELLD	11	Unmodified	_LNPDGKTELLD_					0	0	0			REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.8141479492188	2	607.816793	1213.61903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.62	1	112.61	112.11	113.11	-0.015625								0	0	0	0.38155	1	29292	29292		0.86438	0	1		+		24326	19289	13889	13890	30472	30472					0.020767547440982526
LNPDLKKV	8	Unmodified	_LNPDLKKV_					0	0	0			REV__ENSG00000100852|ENST00000345122|ARHGAP5	REV__ENSG00000100852|ENST00000345122|ARHGAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.8005676269531	2	463.78711	925.559667	0.36219	0.00016798	-0.24098	-0.00011176	0.12121	5.6214E-05	463.78709599598807	35.912	0.60829	35.998	35.762	36.371	0.08625					30	21	2	0	0	0	0.37071	1	7265	7265		22.736	4.5899	1	414800	+		24327	14233	13890	13891	30473	30473					0.0939094831123839
LNPKSFWH	8	Unmodified	_LNPKSFWH_					0	0	0		ENSG00000277932|ENST00000610445|OR52E5	ENSG00000277932|ENST00000610445|OR52E5	ENSG00000277932|ENST00000610445|OR52E5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.3117065429688	2	514.769252	1027.52395	0.029105	1.4982E-05	-0.43024	-0.00022147	-0.40113	-0.00020649	514.7688922499179	15.04	0.14692	15.04	14.981	15.127	0					7	4	2	0	0	0	0.34337	1	899	899		5.2307	1.6342	1	28418			24328	8736	13891	13892	30474	30474					0.011289108542314352
LNPLLITV	8	Unmodified	_LNPLLITV_					0	0	0		ENST00000302351.8_1_5:73923668-73923869:-|nuORF	ENST00000302351.8_1_5:73923668-73923869:-|nuORF	ENST00000302351.8_1_5:73923668-73923869:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7864074707031	2	441.786579	881.558604	0.63888	0.00028225	-0.48558	-0.00021452	0.1533	6.7727E-05	441.78629120419845	78.425	0.92393	78.394	78.009	78.933	-0.030434					70	35	3	0	0	0	0.27124	1	20300	20300		34.102	0	1	413530			24329	9233	13892	13893	30475	30475					0.11308733942314575
LNPVELDFLL	10	Unmodified	_LNPVELDFLL_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76435259-76454697:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8343505859375	2	586.831714	1171.64888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.814	1	84.801	84.301	85.301	-0.01284								0	0	0	0.37581	1	22237	22237		3.9444	0.66309	1				24330	7707	13893	13894	30476	30476					0.06991738480087406
LNQDDFRR	8	Unmodified	_LNQDDFRR_					0	0	0			REV__ENSG00000157827|ENST00000288670|FMNL2	REV__ENSG00000157827|ENST00000288670|FMNL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2666015625	2	532.267604	1062.52066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.65	1	115.67	115.17	116.17	0.018738								0	0	0	0.37724	1	30034	30034		2.3027	0	1		+		24331	16796	13894	13895	30477	30477					-0.008103839904379129
LNQFDSIKF	9	Unmodified	_LNQFDSIKF_					0	0	0		nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9;CHD9|p.F1422Sfs*11|1|0.23|ENSG00000177200|chr16:53263040-53263040|C/-|frameshift_variant	nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3096313476562	2	556.292756	1110.57096	0.11654	6.4829E-05	-1.4017	-0.00077974	-1.2851	-0.00071491	556.292008649006	67.407	0.27	67.391	67.236	67.506	-0.016296					12	8	2	0	0	0	0.12846	1	16934	16934		34.102	0	1	84650			24332	6972	13895	13896	30478	30478					0.02009725614720992
LNQFHDVV	8	Unmodified	_LNQFHDVV_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000567163.5_1_15:75651578-75652319:-|nuORF;ENST00000564785.5_1_15:75652241-75652397:-|nuORF;ENST00000565953.5_1_15:75651952-75652447:-|nuORF;ENST00000563794.1_1_15:75651952-75652397:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8004150390625	2	486.250892	970.48723	0.023889	1.1616E-05	1.2894	0.000627	1.3133	0.00063861	486.25167894431667	95.671	0.63396	95.671	95.455	96.089	0					97	63	2	0	0	0	0.34247	1	25571	25571		4.756	0	1	98530			24333	4301	13896	13897	30479	30479					0.0008061423767458109
LNQFHDVV	8	Unmodified	_LNQFHDVV_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000567163.5_1_15:75651578-75652319:-|nuORF;ENST00000564785.5_1_15:75652241-75652397:-|nuORF;ENST00000565953.5_1_15:75651952-75652447:-|nuORF;ENST00000563794.1_1_15:75651952-75652397:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8004150390625	2	486.250892	970.48723	0.35154	0.00017094	1.0813	0.00052581	1.4329	0.00069674	486.25161744934456	95.713	0.61531	95.709	95.467	96.082	-0.0038147					88	56	2	0	0	0	0.34247	1	25572	25572		8.5933	3.3626	1	255950			24334	4301	13896	13897	30480	30480					0.0008061423767458109
LNQKFLHI	8	Unmodified	_LNQKFLHI_					0	0	0			REV__ENSG00000169180|ENST00000304658|XPO6	REV__ENSG00000169180|ENST00000304658|XPO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.8015441894531	2	506.800552	1011.58655	0.2206	0.0001118	1.1787	0.00059736	1.3993	0.00070916	506.80123774812176	41.335	0.96181	41.432	40.638	41.6	0.096626					83	35	4	0	0	0	0.4397	1	8910	8910		9.3474	0.75416	1	1953200	+		24335	17501	13897	13898	30481	30481					0.0812205692243424
LNQKLQLEL	9	Unmodified	_LNQKLQLEL_					0	0	0		ENSG00000155980|ENST00000455537|KIF5A	ENSG00000155980|ENST00000455537|KIF5A	ENSG00000155980|ENST00000455537|KIF5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3292846679688	2	549.829506	1097.64446	0.31715	0.00017438	0.54106	0.00029749	0.85821	0.00047187	549.82991458593	23.38	0.77621	23.292	22.937	23.713	-0.087608					48	27	3	0	0	0	0.25988	1	3535	3535		3.9444	0	1	125030			24336	5212	13898	13899	30482	30482					0.0995427405719056
LNQPARLTL	9	Unmodified	_LNQPARLTL_					0	0	0		ENSG00000182810|ENST00000332395|DDX28	ENSG00000182810|ENST00000332395|DDX28	ENSG00000182810|ENST00000332395|DDX28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7756958007812	2	513.308741	1024.60293	0.73181	0.00037564	-0.54928	-0.00028195	0.18253	9.3697E-05	513.3084353308482	37.297	0.58604	37.297	37.093	37.679	0					34	20	3	0	0	0	0.23784	1	7700	7700		19.257	1.1106	1	396510			24337	7321	13899	13900	30483	30483					0.09161138088529697
LNQPARLTL	9	Unmodified	_LNQPARLTL_					0	0	0		ENSG00000182810|ENST00000332395|DDX28	ENSG00000182810|ENST00000332395|DDX28	ENSG00000182810|ENST00000332395|DDX28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7757568359375	2	513.308741	1024.60293	0.3778	0.00019393	-0.35869	-0.00018412	0.019111	9.8098E-06	513.3085546071588	37.122	0.51278	37.215	37.06	37.573	0.093014					34	18	3	0	0	0	0.23784	1	7601	7601		19.257	1.1106	1	405260			24338	7321	13899	13900	30484	30484					0.09161138088529697
LNQWRRKC	8	Unmodified	_LNQWRRKC_					0	0	0			REV__ENST00000278505.4_1_11:94862848-94862923:+|nuORF	REV__ENST00000278505.4_1_11:94862848-94862923:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3162231445312	2	552.298185	1102.58182	0.43282	0.00023904	-0.21512	-0.00011881	0.2177	0.00012024	552.297935702147	62.338	1.2829	62.435	62.058	63.341	0.096985					153	46	7	0	0	0	0.39956	1	15444	15444		19.439	19.439	1	7324700	+		24339	19699	13900	13901	30485	30485					0.034628495080141874
LNRNHRRLKWE	11	Unmodified	_LNRNHRRLKWE_					0	0	0		ENSG00000215475|ENST00000400405|SIAH3	ENSG00000215475|ENST00000400405|SIAH3	ENSG00000215475|ENST00000400405|SIAH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.272216796875	3	507.955164	1520.84366	0.10333	5.2489E-05	1.1152	0.00056649	1.2186	0.00061898	507.95593484748986	23.146	0.27718	23.059	22.993	23.27	-0.08761					14	9	2	0	0	0	0.3333	1	3388	3388		1.3296	0.11481	1	39652			24340	8409	13901	13902	30486	30486					0.10407347128466427
LNRPGLGSIV	10	Unmodified	_LNRPGLGSIV_					0	0	0		ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7750854492188	2	513.308741	1024.60293	0.31614	0.00016228	-0.33378	-0.00017133	-0.017637	-9.0532E-06	513.3085386437332	37.211	0.51623	37.298	37.062	37.578	0.08741					39	18	3	0	0	0	0.27337	1	7632	7632		17.113	0	1	374540			24341	6857	13902	13903	30487	30487					0.09161138088529697
LNRQAFRMR	9	Unmodified	_LNRQAFRMR_					0	0	0			REV__nc|ENSG00000100353|O15371-3|EIF3D	REV__nc|ENSG00000100353|O15371-3|EIF3D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.330322265625	2	596.330016	1190.64548	0.30704	0.0001831	0.15296	9.1213E-05	0.45999	0.00027431	596.330116171023	16.048	0.84314	16.048	15.816	16.659	0					82	29	4	0	0	0	0.33018	1	1269	1269		4.3292	4.3292	1	402490	+		24342	14187	13903	13904	30488	30488					0.0577820994508329
LNRSGRRLA	9	Unmodified	_LNRSGRRLA_					0	0	0			REV__nc|ENSG00000189079|Q68CP9-3|ARID2	REV__nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.8155517578125	2	521.815056	1041.61556	0.057625	3.007E-05	1.2045	0.00062854	1.2621	0.00065861	521.8157081431332	13.243	0.32269	13.144	12.953	13.276	-0.099291					15	10	2	0	0	0	0.25112	1	373	373		16.149	3.1066	1	280180	+		24343	18596	13904	13905	30489	30489					0.09641594271442955
LNRSGRRLA	9	Unmodified	_LNRSGRRLA_					0	0	0			REV__nc|ENSG00000189079|Q68CP9-3|ARID2	REV__nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.815056	1041.61556	0.11219	5.8544E-05	1.023	0.0005338	1.1352	0.00059234	521.8155022840268	13.134	0.38375	13.134	12.952	13.336	0	-0.00845	-0.00014233	NaN	16.149	33	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221520	+		24344	18596	13904	13905							0.09641594271442955
LNRSGRRLA	9	Unmodified	_LNRSGRRLA_					0	0	0			REV__nc|ENSG00000189079|Q68CP9-3|ARID2	REV__nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	521.815056	1041.61556	0.057625	3.007E-05	1.2045	0.00062854	1.2621	0.00065861	521.8157081431332	13.243	0.32269	13.144	12.953	13.276	-0.099291	0.00096615	4.7149E-05	NaN	16.149	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280180	+		24345	18596	13904	13905							0.09641594271442955
LNRSGRRLA	9	Unmodified	_LNRSGRRLA_					0	0	0			REV__nc|ENSG00000189079|Q68CP9-3|ARID2	REV__nc|ENSG00000189079|Q68CP9-3|ARID2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	521.815056	1041.61556	0.0051914	2.7089E-06	1.1984	0.00062533	1.2036	0.00062804	521.815596394095	13.218	0.39771	13.15	12.905	13.302	-0.067496	0.0074838	4.0737E-05	NaN	16.149	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170060	+		24346	18596	13904	13905							0.09641594271442955
LNRSTKDSL	9	Unmodified	_LNRSTKDSL_					0	0	0			REV__ENSG00000162695|ENST00000357650|SLC30A7	REV__ENSG00000162695|ENST00000357650|SLC30A7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8157348632812	2	517.285463	1032.55637	0.4893	0.00025311	3.7511	0.0019404	4.2404	0.0021935	517.2875015611078	48.477	0.31841	48.52	48.269	48.588	0.04332					15	11	2	0	0	0	0.24848	1	11099	11099		13.906	0.86358	1	132410	+		24347	17001	13905	13906	30490	30490					0.041396534665636864
LNRTPANL	8	Unmodified	_LNRTPANL_					0	0	0		nc|ENSG00000100626|Q8N428-2|GALNT16;ENSG00000100626|ENST00000448469|GALNT16	nc|ENSG00000100626|Q8N428-2|GALNT16	nc|ENSG00000100626|Q8N428-2|GALNT16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.75885009765625	2	449.758884	897.503215	0.2503	0.00011258	-0.22782	-0.00010246	0.022487	1.0114E-05	449.75867649362664	36.989	1.224	37.076	36.815	38.039	0.08741					111	44	4	0	0	0	0.22	1	7660	7660		39.957	3.9131	1	1456700			24348	1618	13906	13907	30491	30491					0.05036320474573586
LNRTPSEI	8	Unmodified	_LNRTPSEI_					0	0	0		nc|ENSG00000205754|G3V0H7|SLCO1B7;nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7	nc|ENSG00000205754|G3V0H7|SLCO1B7	nc|ENSG00000205754|G3V0H7|SLCO1B7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2454528808594	2	465.256174	928.497795	-0.13516	-6.2885E-05	0.42732	0.00019882	0.29216	0.00013593	465.25636274633234	33.238	0.36475	33.238	33.091	33.456	0					21	12	2	0	0	0	0.32537	1	6409	6409		24.021	3.5669	1	179770			24349	12915	13907	13908	30492	30492					0.03068596892092046
LNRVRSAV	8	Unmodified	_LNRVRSAV_					0	0	0		ENST00000486709.1_1_1:113257111-113257923:-|nuORF;ENSG00000155367|ENST00000309276|PPM1J	ENST00000486709.1_1_1:113257111-113257923:-|nuORF	ENST00000486709.1_1_1:113257111-113257923:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7563781738281	2	457.780151	913.545748	0.12926	5.9175E-05	-0.60653	-0.00027766	-0.47727	-0.00021848	457.7798837920789	23.249	0.61028	23.204	23.004	23.614	-0.044867					33	21	2	0	0	0	0.34167	1	3435	3435		11.64	1.5664	1	222870			24350	5172	13908	13909	30493	30493					0.08551715602811782
LNRYNQWLK	9	Unmodified	_LNRYNQWLK_					0	0	0			REV__ENSG00000141569|ENST00000269383|TRIM65	REV__ENSG00000141569|ENST00000269383|TRIM65	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.22772216796875	3	412.22789	1233.66184	-0.10459	-4.3113E-05	-1.7895	-0.00073767	-1.8941	-0.00078078	412.22694977462214	16.765	1.1983	16.765	16.491	17.69	0					66	41	3	0	0	0	0.32885	1	1415	1415		4.5289	0.33936	1	306000	+		24351	16084	13909	13910	30494	30494					0.05435614382827225
LNRYNQWLK	9	Unmodified	_LNRYNQWLK_					0	0	0			REV__ENSG00000141569|ENST00000269383|TRIM65	REV__ENSG00000141569|ENST00000269383|TRIM65	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.22796630859375	3	412.22789	1233.66184	0.19633	8.0932E-05	-0.74171	-0.00030575	-0.54538	-0.00022482	412.2273777894813	16.805	0.92177	16.743	16.205	17.127	-0.062534					74	32	4	0	0	0	0.31164	1	1411	1411		7.1017	2.3858	1	261790	+		24352	16084	13909	13910	30495	30495					0.05435614382827225
LNRYTVTVE	9	Unmodified	_LNRYTVTVE_					0	0	0		ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1;nc|ENSG00000106799|P36897-3|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2509765625	2	547.795663	1093.57677	0.68023	0.00037263	1.852	0.0010145	2.5322	0.0013871	547.7969609269105	43.248	0.66113	43.326	43.155	43.816	0.077515					30	23	2	0	0	0	0.21389	1	9524	9524		25.399	0	1	222590			24353	2102	13910	13911	30496	30496					0.03372824126381602
LNSFHGPLSF	10	Unmodified	_LNSFHGPLSF_					0	0	0			REV__ENST00000373218.4_1_10:72182698-72182848:+|nuORF	REV__ENST00000373218.4_1_10:72182698-72182848:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3059692382812	2	559.785099	1117.55564	0.19265	0.00010784	1.553	0.00086934	1.7456	0.00097719	559.7862187268472	53.659	0.25937	53.715	53.535	53.794	0.056255					14	9	2	0	0	0	0.27059	1	12669	12669		24.021	0.87215	1	144240	+		24354	20431	13911	13912	30497	30497					0.0015685881753597641
LNSFHGPLSF	10	Unmodified	_LNSFHGPLSF_					0	0	0			REV__ENST00000373218.4_1_10:72182698-72182848:+|nuORF	REV__ENST00000373218.4_1_10:72182698-72182848:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	559.785099	1117.55564	0.19265	0.00010784	1.553	0.00086934	1.7456	0.00097719	559.7862187268472	53.659	0.25937	53.715	53.535	53.794	0.056255	-0.0014562	0.00011863	NaN	24.021	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144240	+		24355	20431	13911	13912							0.0015685881753597641
LNSKQTFAK	9	Unmodified	_LNSKQTFAK_					0	0	0			REV__ENSG00000245680|ENST00000532828|ZNF585B	REV__ENSG00000245680|ENST00000532828|ZNF585B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2786865234375	2	518.792924	1035.57129	0.43131	0.00022376	-1.0244	-0.00053146	-0.59311	-0.0003077	518.7923659490854	26.528	0.37209	26.506	26.298	26.67	-0.022236					22	12	2	0	0	0	0.24688	1	4386	4386		6.2058	0	1	115780	+		24356	19207	13912	13913	30498	30498					0.05493145334571636
LNSSKQKGR	9	Unmodified	_LNSSKQKGR_					0	0	0		ENST00000296701.10_1_5:147763547-147774317:+|nuORF	ENST00000296701.10_1_5:147763547-147774317:+|nuORF	ENST00000296701.10_1_5:147763547-147774317:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.2934875488281	2	509.293622	1016.57269	-0.16825	-8.5689E-05	0.4195	0.00021365	0.25125	0.00012796	509.2935738473273	12.689	0.5018	12.622	12.491	12.993	-0.067496					30	16	4	0	0	0	0.30459	1	204	204		8.1555	2.3951	1	194750			24357	9191	13913	13914	30499	30499					0.06506779423341413
LNSSLGKSMK	10	Unmodified	_LNSSLGKSMK_					0	0	0			REV__ENST00000358465.6_1_1:114948043-114948136:-|nuORF	REV__ENST00000358465.6_1_1:114948043-114948136:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2365112304688	2	532.792066	1063.56958	0.53752	0.00028639	-0.29727	-0.00015838	0.24025	0.000128	532.7917024144579	17.066	0.61295	17.006	16.859	17.472	-0.060429					28	21	2	0	0	0	0.32054	1	1532	1532		3.2813	0.97858	1	42010	+		24358	20233	13914	13915	30500	30500					0.04033768254316783
LNSSQYYIN	9	Unmodified	_LNSSQYYIN_					0	0	0			REV__ENST00000497028.5_1_10:46159175-46167949:-|nuORF	REV__ENST00000497028.5_1_10:46159175-46167949:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7549438476562	2	551.264196	1100.51384	0.19318	0.0001065	-0.056546	-3.1172E-05	0.13664	7.5324E-05	551.2639335707721	27.448	0.45707	27.426	27.13	27.587	-0.021412					26	15	2	0	0	0	0.29638	1	4685	4685		9.3831	2.0939	1	104130	+		24359	21678	13915	13916	30501	30501					-0.032397416616504415
LNSVTKKKF	9	Unmodified	_LNSVTKKKF_					0	0	0			REV__ENST00000479393.2_1_6:138791728-138820433:-|nuORF	REV__ENST00000479393.2_1_6:138791728-138820433:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2365112304688	2	532.826766	1063.63898	0.55154	0.00029388	-0.6113	-0.00032572	-0.059754	-3.1839E-05	532.8262095124873	17.088	0.29424	17.028	16.917	17.211	-0.060429					17	10	2	0	0	0	0.25988	1	1532	1532		3.9444	1.6417	1	32114	+		24360	15747	13916	13917	30502	30502					0.10970595265393968
LNTFIHHNI	9	Unmodified	_LNTFIHHNI_					0	0	0			REV__nc|ENSG00000157388|Q01668-4|CACNA1D	REV__nc|ENSG00000157388|Q01668-4|CACNA1D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.7860107421875	2	554.79854	1107.58253	0.33554	0.00018616	0.70086	0.00038884	1.0364	0.00057499	554.7988231712419	31.891	0.37419	31.891	31.636	32.01	0					28	12	3	0	0	0	0.17787	1	6026	6026		26.884	4.1087	1	823620	+		24361	16781	13917	13918	30503	30503					0.03303967428678334
LNVECKRQAL	10	Unmodified	_LNVECKRQAL_					0	0	0			REV__ENSG00000127743|ENST00000261796|IL17B	REV__ENSG00000127743|ENST00000261796|IL17B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.3256225585938	2	587.324065	1172.63358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.17	1	104.18	103.68	104.68	0.0011444								0	0	0	0.37157	1	27693	27693		5.7319	0.43497	1		+		24362	15349	13918	13919	30504	30504					0.05416548411267286
LNVERCSLGRL	11	Unmodified	_LNVERCSLGRL_					0	0	0		ENSG00000146904|ENST00000275815|EPHA1;EPHA1|p.S282Afs*58|1|0.24|ENSG00000146904|chr7:143399406-143399406|A/-|frameshift_variant;nc|ENSG00000146904|P21709-3|EPHA1;nc|ENSG00000146904|P21709-2|EPHA1	ENSG00000146904|ENST00000275815|EPHA1	ENSG00000146904|ENST00000275815|EPHA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8490600585938	2	630.348071	1258.68159	-0.04817	-3.0364E-05	0.52835	0.00033305	0.48018	0.00030268	630.8497731512255	106.77	0.52075	106.77	106.51	107.03	0					222	80	4	0	0	0	0.42346	1	28174	28174		8.1555	2.8586	1	1742200			24363	4736	13919	13920	30505	30505					0.06259622331322134
LNVERCSLGRL	11	Unmodified	_LNVERCSLGRL_					0	0	0		ENSG00000146904|ENST00000275815|EPHA1;EPHA1|p.S282Afs*58|1|0.24|ENSG00000146904|chr7:143399406-143399406|A/-|frameshift_variant;nc|ENSG00000146904|P21709-3|EPHA1;nc|ENSG00000146904|P21709-2|EPHA1	ENSG00000146904|ENST00000275815|EPHA1	ENSG00000146904|ENST00000275815|EPHA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.8499755859375	2	630.348071	1258.68159	0.29937	0.00018871	0.26453	0.00016675	0.5639	0.00035546	630.8497132527009	106.75	0.62841	106.75	106.5	107.13	0.0050507					196	98	3	0	0	0	0.42346	1	28214	28214		8.1555	4.559	1	1714200			24364	4736	13919	13920	30506	30506					0.06259622331322134
LNVGELLL	8	Unmodified	_LNVGELLL_					0	0	0		ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.2513122558594	2	435.768386	869.522219	0.046201	2.0133E-05	-0.5138	-0.0002239	-0.4676	-0.00020376	435.76822997146957	72.688	0.86554	72.688	72.215	73.081	0					53	31	3	0	0	0	0.31934	1	18530	18530		24.674	5.2349	1	218280			24365	10697	13920	13921	30507	30507					0.08223857045629757
LNVGELLL	8	Unmodified	_LNVGELLL_					0	0	0		ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2512512207031	2	435.768386	869.522219	0.11406	4.9705E-05	-0.61458	-0.00026782	-0.50052	-0.00021811	435.76813460353713	72.632	1.0043	72.686	72.167	73.172	0.053833					53	36	2	0	0	0	0.28969	1	18536	18536		28.487	0	1	151880			24366	10697	13920	13921	30508	30508					0.08223857045629757
LNVKKIRLG	9	Unmodified	_LNVKKIRLG_					0	0	0			REV__ENST00000479978.5_1_22:41614103-41614259:+|nuORF	REV__ENST00000479978.5_1_22:41614103-41614259:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2899169921875	2	520.850576	1039.6866	0.59744	0.00031118	-0.1807	-9.4119E-05	0.41674	0.00021706	520.8504508185166	54.44	0.83638	54.424	54.17	55.006	-0.015923					64	29	4	0	0	0	0.25622	1	12871	12871		7.2892	0	1	1443900	+		24367	21471	13921	13922	30509	30509					0.16834294256204885
LNVKRIIQELQ	11	Unmodified	_LNVKRIIQELQ_					0	0	0		ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.9449157714844	3	451.945271	1352.81398	-0.22432	-0.00010138	-0.65691	-0.00029689	-0.88123	-0.00039827	451.9448759886952	106.33	0.15598	106.33	106.24	106.4	0					54	20	4	0	0	0	0.46704	1	28113	28113		2.4348	1.22	1	2008600			24368	2943	13922	13923	30510	30510					0.15168970339777843
LNVKRIIQELQ	11	Unmodified	_LNVKRIIQELQ_					0	0	0		ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	451.945271	1352.81398	-0.22432	-0.00010138	-0.65691	-0.00029689	-0.88123	-0.00039827	451.9448759886952	106.33	0.15598	106.33	106.24	106.4	0	0.0016838	0.00029858	NaN	2.4348	54	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2008600			24369	2943	13922	13923							0.15168970339777843
LNVKRIIQELQ	11	Unmodified	_LNVKRIIQELQ_					0	0	0		ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	451.945271	1352.81398	-0.041835	-1.8907E-05	-0.94378	-0.00042653	-0.98561	-0.00044544	451.9447876304999	106.32	0.15126	106.32	106.25	106.4	-0.0060425	-0.0072445	-9.0361E-05	NaN	2.4348	54	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1798100			24370	2943	13922	13923							0.15168970339777843
LNVKRIIQELQ	11	Unmodified	_LNVKRIIQELQ_					0	0	0		ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	451.945271	1352.81398	0.13691	6.1874E-05	-1.0156	-0.000459	-0.8787	-0.00039712	451.944697398029	106.33	0.15571	106.33	106.27	106.42	0.0050507	0.0055607	-0.00018775	NaN	2.4348	57	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2219100			24371	2943	13922	13923							0.15168970339777843
LNVLREAVRR	10	Unmodified	_LNVLREAVRR_					0	0	0		ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENSG00000139719|ENST00000267199|VPS33A	ENSG00000139719|ENST00000267199|VPS33A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.908447265625	3	409.254439	1224.74149	-0.17002	-6.9583E-05	-0.52063	-0.00021307	-0.69066	-0.00028265	409.2542183329595	16.522	0.36338	16.522	16.295	16.659	0					23	12	2	0	0	0	0.32143	1	1362	1362		1.5923	0.13716	1	33972			24372	4261	13923	13924	30511	30511					0.13810681056816065
LNVNAKPFV	9	Unmodified	_LNVNAKPFV_					0	0	0		ENSG00000189369|ENST00000340438|GSPT2;nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1	ENSG00000189369|ENST00000340438|GSPT2	ENSG00000189369|ENST00000340438|GSPT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7983093261719	2	501.292559	1000.57057	0.37014	0.00018555	-2.0687	-0.001037	-1.6986	-0.00085148	501.2911452340618	82.002	0.41066	82.002	81.699	82.11	0					24	15	2	0	0	0	0.25706	1	21332	21332		6.7232	0.51738	1	89088			24373	1829	13924	13925	30512	30512					0.07030350685522535
LNVNPNRKLIE	11	Unmodified	_LNVNPNRKLIE_					0	0	0			REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.25762939453125	3	437.257738	1308.75138	-0.028661	-1.2532E-05	-0.63384	-0.00027715	-0.6625	-0.00028968	437.25762125861814	91.917	1.0388	91.917	91.518	92.557	0					180	75	4	0	0	0	0.47713	1	24373	24373		1.1098	1.1098	1	430930	+		24374	15664	13925	13926	30513	30513					0.10935824271564343
LNVRKGGI	8	Unmodified	_LNVRKGGI_					0	0	0			REV__ENSG00000080371|ENST00000261263|RAB21	REV__ENSG00000080371|ENST00000261263|RAB21	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.7603759765625	2	428.771794	855.529036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.586	1	86.586	86.086	87.086	0								0	0	0	0.35014	1	22796	22796		14.582	0	1		+		24375	13886	13926	13927	30514	30514					0.09549214716855658
LNVRKGGI	8	Unmodified	_LNVRKGGI_					0	0	0			REV__ENSG00000080371|ENST00000261263|RAB21	REV__ENSG00000080371|ENST00000261263|RAB21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2572937011719	2	428.771794	855.529036	-0.0030694	-1.3161E-06	0.52667	0.00022582	0.5236	0.0002245	428.7720305395056	87.257	0.091156	87.344	87.278	87.37	0.08709					5	3	2	0	0	0	0.34319	1	22985	22985		0.69038	0	1	36585	+		24376	13886	13926	13927	30515	30515					0.09549214716855658
LNVTLNHKKAQ	11	Unmodified	_LNVTLNHKKAQ_					0	0	0			REV__ENSG00000136878|ENST00000372429|USP20	REV__ENSG00000136878|ENST00000372429|USP20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.36962890625	2	633.369861	1264.72517	-0.057243	-3.6256E-05	-0.44058	-0.00027905	-0.49782	-0.00031531	633.3694829781047	99.148	1.0904	99.148	98.842	99.933	0					240	139	2	0	0	0	0.47649	2	26470	26470;26570		1.1933	0.12188	1	191160	+		24377	15835	13927	13928	30516;30517	30516					0.10339555100085818
LNVTLNHKKAQ	11	Unmodified	_LNVTLNHKKAQ_					0	0	0			REV__ENSG00000136878|ENST00000372429|USP20	REV__ENSG00000136878|ENST00000372429|USP20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3678588867188	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.38	1	115.38	114.88	115.88	0								0	0	0	0.38126	1	29903	29903		1.1933	0.12188	1		+		24378	15835	13927	13928	30518	30518					0.10339555100085818
LNVTLNHKKAQ	11	Unmodified	_LNVTLNHKKAQ_					0	0	0			REV__ENSG00000136878|ENST00000372429|USP20	REV__ENSG00000136878|ENST00000372429|USP20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.36865234375	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.28	1	116.28	115.78	116.78	0								0	0	0	0.38126	1	30108	30108		1.1933	0	1		+		24379	15835	13927	13928	30519	30519					0.10339555100085818
LNVTLNHKKAQ	11	Unmodified	_LNVTLNHKKAQ_					0	0	0			REV__ENSG00000136878|ENST00000372429|USP20	REV__ENSG00000136878|ENST00000372429|USP20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3685302734375	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.14	1	115.16	114.66	115.66	0.018738								0	0	0	0.38126	1	29922	29922		1.1933	0.12188	1		+		24380	15835	13927	13928	30520	30520					0.10339555100085818
LNVTLNHKKAQ	11	Unmodified	_LNVTLNHKKAQ_					0	0	0			REV__ENSG00000136878|ENST00000372429|USP20	REV__ENSG00000136878|ENST00000372429|USP20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3688354492188	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.55	1	116.58	116.08	117.08	0.020988								0	0	0	0.38137	1	30241	30241		1.0715	0.61312	1		+		24381	15835	13927	13928	30521	30521					0.10339555100085818
LNVWVALLN	9	Unmodified	_LNVWVALLN_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2896728515625	2	521.30821	1040.60187	0.54003	0.00028152	-1.3478	-0.0007026	-0.80773	-0.00042108	521.3075398251345	53.363	0.37571	53.363	53.038	53.414	0					21	13	2	0	0	0	0.12846	1	12600	12600		34.102	12.356	1	428360			24382	4833	13928	13929	30522	30522					0.08318923719616578
LNVWVALLN	9	Unmodified	_LNVWVALLN_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2897338867188	2	521.30821	1040.60187	0.52884	0.00027569	-1.7768	-0.00092628	-1.248	-0.0006506	521.3072399154769	53.269	0.32004	53.325	53.111	53.431	0.056259					23	11	3	0	0	0	0.1669	1	12587	12587		28.487	5.3384	1	368310			24383	4833	13928	13929	30523	30523					0.08318923719616578
LNVWVALLN	9	Unmodified	_LNVWVALLN_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	521.30821	1040.60187	0.47387	0.00024703	-1.6998	-0.00088615	-1.226	-0.00063911	521.3073164521714	53.442	0.36552	53.433	53.166	53.531	-0.0096054	0.059138	-0.00017475	NaN	34.102	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360690			24384	4833	13928	13929							0.08318923719616578
LNVYNLYF	8	Unmodified	_LNVYNLYF_					0	0	0		ENST00000235290.7_1_13:50618334-50618430:-|nuORF	ENST00000235290.7_1_13:50618334-50618430:-|nuORF	ENST00000235290.7_1_13:50618334-50618430:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.8106689453125	2	523.271293	1044.52803	0.50672	0.00026515	-0.73978	-0.00038711	-0.23306	-0.00012195	523.2711591171885	88.585	0.70193	88.674	88.37	89.072	0.089195					60	29	3	0	0	0	0.34247	1	23334	23334		8.5933	0	1	340900			24385	8873	13929	13930	30524	30524					0.007549555572722966
LNVYVTPTI	9	Unmodified	_LNVYVTPTI_					0	0	0		HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;HMCN1|p.A5600Gfs*20|1|0.2|ENSG00000143341|chr1:186189767-186189768|-/G|frameshift_variant;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8038024902344	2	510.292225	1018.5699	0.38265	0.00019526	-2.7192	-0.0013876	-2.3365	-0.0011923	510.2909156370908	79.63	0.19881	79.63	79.467	79.666	0					10	7	2	0	0	0	0.23784	1	20633	20633		13.906	6.6168	1	46683			24386	4502	13930	13931	30525	30525					0.061355112458159056
LNWFRLYKVPD	11	Unmodified	_LNWFRLYKVPD_					0	0	0		nc|ENSG00000138777|Q9H2U2-4|PPA2;nc|ENSG00000138777|Q9H2U2-6|PPA2;ENST00000509426.5_1_4:106320018-106395207:-|nuORF;nc|ENSG00000138777|Q9H2U2-3|PPA2;ENSG00000138777|ENST00000341695|PPA2;nc|ENSG00000138777|Q9H2U2-2|PPA2	nc|ENSG00000138777|Q9H2U2-4|PPA2	nc|ENSG00000138777|Q9H2U2-4|PPA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.24169921875	3	484.266233	1449.77687	0.1617	7.8305E-05	0.33095	0.00016027	0.49265	0.00023857	484.26687257800734	24.392	0.57183	24.392	24.134	24.706	0					27	18	2	0	0	0	0.33316	1	3693	3693		2.084	0.62885	1	43799			24387	4194	13931	13932	30526	30526					0.0699729879397637
LNWFRLYKVPD	11	Unmodified	_LNWFRLYKVPD_					0	0	0		nc|ENSG00000138777|Q9H2U2-4|PPA2;nc|ENSG00000138777|Q9H2U2-6|PPA2;ENST00000509426.5_1_4:106320018-106395207:-|nuORF;nc|ENSG00000138777|Q9H2U2-3|PPA2;ENSG00000138777|ENST00000341695|PPA2;nc|ENSG00000138777|Q9H2U2-2|PPA2	nc|ENSG00000138777|Q9H2U2-4|PPA2	nc|ENSG00000138777|Q9H2U2-4|PPA2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	484.266233	1449.77687	0.09658	4.677E-05	0.65102	0.00031527	0.7476	0.00036204	484.26704022225783	24.539	0.50721	24.503	24.252	24.76	-0.036764	0.055477	0.00026833	NaN	2.084	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80282			24388	4194	13931	13932							0.0699729879397637
LNWGVQIAKG	10	Unmodified	_LNWGVQIAKG_					0	0	0		nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3;ENST00000548709.1_1_12:56490921-56492754:+|nuORF	nc|ENSG00000065361|P21860-4|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.291748046875	2	543.308741	1084.60293	0.50488	0.00027431	-1.1295	-0.00061367	-0.62462	-0.00033936	543.8101075758373	26.91	0.82289	26.889	26.419	27.242	-0.02141					67	28	4	0	0	0	0.31867	1	4446	4446		18.146	1.0335	1	219210			24389	813	13932	13933	30527	30527					0.06401138088494918
LNYCSMEMI	9	Unmodified	_LNYCSMEMI_					0	0	0			REV__ENSG00000030066|ENST00000378460|NUP160	REV__ENSG00000030066|ENST00000378460|NUP160	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2982177734375	2	552.232138	1102.44972	0.42913	0.00023698	-2.0178	-0.0011143	-1.5887	-0.00087731	552.232220151769	62.686	0.66446	62.686	62.266	62.93	0					47	24	3	0	0	0	0.2451	1	15388	15388		10.824	2.9138	1	174940	+		24390	13491	13933	13934	30528	30528					-0.09740304406136602
LNYCSMEMI	9	Unmodified	_LNYCSMEMI_					0	0	0			REV__ENSG00000030066|ENST00000378460|NUP160	REV__ENSG00000030066|ENST00000378460|NUP160	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2982177734375	2	552.232138	1102.44972	0.47599	0.00026286	0.47683	0.00026332	0.95283	0.00052618	552.232377138964	62.493	0.60083	62.59	62.254	62.855	0.096985					31	21	2	0	0	0	0.24913	1	15415	15415		12.532	2.4576	1	169020	+		24391	13491	13933	13934	30529	30529					-0.09740304406136602
LNYCSMEMI	9	Unmodified	_LNYCSMEMI_					0	0	0			REV__ENSG00000030066|ENST00000378460|NUP160	REV__ENSG00000030066|ENST00000378460|NUP160	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2981567382812	2	552.232138	1102.44972	0.38521	0.00021272	-2.7975	-0.0015449	-2.4123	-0.0013322	552.2323570182687	62.609	0.74736	62.6	62.191	62.938	-0.0085526					55	27	5	0	0	0	0.24913	1	15457	15457		12.532	0	1	237470	+		24392	13491	13933	13934	30530	30530					-0.09740304406136602
LNYGSYQLF	9	Unmodified	_LNYGSYQLF_					0	0	0			REV__ENST00000550831.7_2_12:112443064-112450879:-|nuORF	REV__ENST00000550831.7_2_12:112443064-112450879:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3162231445312	2	552.771657	1103.52876	0.46258	0.0002557	1.9428	0.0010739	2.4053	0.0013296	552.7732103822153	62.473	0.51635	62.57	62.279	62.795	0.096989					21	18	2	0	0	0	0.1659	1	15444	15444		36.044	7.5574	1	162800	+		24393	22203	13934	13935	30531	30531					-0.018862497936879663
LNYHLLTRF	9	Unmodified	_LNYHLLTRF_					0	0	0			REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.829833984375	2	588.82984	1175.64513	0.47786	0.00028138	-0.2214	-0.00013037	0.25647	0.00015101	588.8297040723174	67.63	0.64094	67.708	67.382	68.023	0.078041					59	22	4	0	0	0	0.25989	1	17014	17014		14.838	0	1	678610	+		24394	16820	13935	13936	30532	30532					0.06433113496859733
LNYHLLTRF	9	Unmodified	_LNYHLLTRF_					0	0	0			REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.8300170898438	2	588.82984	1175.64513	0.31832	0.00018744	-0.0029242	-1.7219E-06	0.3154	0.00018572	588.8297887588049	67.768	0.61995	67.752	67.451	68.071	-0.016296					56	21	3	0	0	0	0.2322	1	17035	17035		20.454	0	1	828540	+		24395	16820	13935	13936	30533	30533					0.06433113496859733
LNYHLLTRF	9	Unmodified	_LNYHLLTRF_					0	0	0			REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	588.82984	1175.64513	0.47786	0.00028138	-0.2214	-0.00013037	0.25647	0.00015101	588.8297040723174	67.63	0.64094	67.708	67.382	68.023	0.078041	-0.028334	-0.00015023	NaN	20.454	59	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	678610	+		24396	16820	13935	13936							0.06433113496859733
LNYRPNLL	8	Unmodified	_LNYRPNLL_					0	0	0			REV__nc|ENSG00000141198|O75674-2|TOM1L1	REV__nc|ENSG00000141198|O75674-2|TOM1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7901916503906	2	501.790184	1001.56581	0.37279	0.00018706	-0.40078	-0.00020111	-0.027993	-1.4047E-05	501.7898883675371	55.475	0.85103	55.475	55.198	56.049	0					88	30	4	0	0	0	0.23581	1	13310	13310		38.151	2.107	1	2495600	+		24397	16067	13936	13937	30534	30534					0.06509466542752307
LPAAGRRQ	8	Unmodified	_LPAAGRRQ_					0	0	0			REV__ENSG00000103326|ENST00000219611|CAPN15	REV__ENSG00000103326|ENST00000219611|CAPN15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.759521484375	2	434.759218	867.503883	0.18568	8.0724E-05	-0.024381	-1.06E-05	0.16129	7.0124E-05	434.75923325651956	77.389	2.1331	77.389	76.643	78.776	0					206	79	5	0	0	0	0.42758	2	19988	19988;20124		13.508	0	1	11154000	+		24398	14365	13937	13938	30535;30536	30535					0.06483159914273529
LPAAGRRQ	8	Unmodified	_LPAAGRRQ_					0	0	0			REV__ENSG00000103326|ENST00000219611|CAPN15	REV__ENSG00000103326|ENST00000219611|CAPN15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.75921630859375	2	434.759218	867.503883	0.24792	0.00010779	-0.14645	-6.3671E-05	0.10147	4.4115E-05	434.75918576431127	77.367	1.9844	77.423	76.642	78.627	0.05542					176	71	5	0	0	0	0.4419	1	20015	20015		8.5933	0	1	10874000	+		24399	14365	13937	13938	30537	30537					0.06483159914273529
LPAAGRRQ	8	Unmodified	_LPAAGRRQ_					0	0	0			REV__ENSG00000103326|ENST00000219611|CAPN15	REV__ENSG00000103326|ENST00000219611|CAPN15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7591552734375	2	434.759218	867.503883	-0.0082976	-3.6074E-06	-0.22842	-9.9309E-05	-0.23672	-0.00010292	434.7591403037889	79.851	1.3321	79.912	79.239	80.571	0.061417					109	52	3	0	0	0	0.46022	1	20779	20779		2.3027	0	1	669690	+		24400	14365	13937	13938	30538	30538					0.06483159914273529
LPAAGRRQ	8	Unmodified	_LPAAGRRQ_					0	0	0			REV__ENSG00000103326|ENST00000219611|CAPN15	REV__ENSG00000103326|ENST00000219611|CAPN15	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	434.759218	867.503883	0.18568	8.0724E-05	-0.024381	-1.06E-05	0.16129	7.0124E-05	434.75923325651956	77.389	2.1331	77.389	76.643	78.776	0	-0.015302	0.00010578	NaN	13.508	206	79	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11154000	+		24401	14365	13937	13938							0.06483159914273529
LPAALRQE	8	Unmodified	_LPAALRQE_					0	0	0			REV__ENSG00000136878|ENST00000372429|USP20	REV__ENSG00000136878|ENST00000372429|USP20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.77740478515625	2	449.261259	896.507966	0.69047	0.0003102	-0.76384	-0.00034316	-0.073376	-3.2965E-05	449.2609067499323	33.689	0.75036	33.755	33.566	34.317	0.06636					37	26	2	0	0	0	0.32886	1	6540	6540		21.747	3.6117	1	146370	+		24402	15835	13938	13939	30539	30539					0.055572046173210765
LPAALRVRPM	10	Unmodified	_LPAALRVRPM_					0	0	0			REV__nc|nan|Q8N9H9-2|C1orf127	REV__nc|nan|Q8N9H9-2|C1orf127	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3434448242188	2	562.342061	1122.66957	0.55229	0.00031058	1.2686	0.00071341	1.8209	0.001024	562.3426637628147	83.384	1.2369	83.384	82.9	84.137	0					125	48	4	0	0	0	0.39935	1	21956	21956		3.5965	1.019	1	1994200	+		24403	17883	13939	13940	30540	30540					0.11314050378769025
LPAAQAQPSF	10	Unmodified	_LPAAQAQPSF_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2552490234375	2	515.271824	1028.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.411	1	65.399	64.899	65.899	-0.011337								0	0	0	0.34209	1	16305	16305		18.146	3.5647	1				24404	619	13940	13941	30541	30541					0.015971699261854155
LPAARQTR	8	Unmodified	_LPAARQTR_					0	0	0			REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF	REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.77227783203125	2	456.772326	911.530098	0.30257	0.0001382	-0.1946	-8.8887E-05	0.10797	4.9317E-05	456.77228975411793	77.167	0.80582	77.167	76.858	77.663	0					52	29	3	0	0	0	0.35375	1	19901	19901		24.674	2.9272	1	439120	+		24405	22064	13941	13942	30542	30542					0.07079429085740685
LPAARQTR	8	Unmodified	_LPAARQTR_					0	0	0			REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF	REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.772216796875	2	456.772326	911.530098	0.26837	0.00012258	-0.058091	-2.6534E-05	0.21028	9.6049E-05	456.7723141770674	77.079	0.87724	77.135	76.833	77.71	0.055412					44	30	2	0	0	0	0.41097	1	19867	19867		18.135	2.2878	1	445850	+		24406	22064	13941	13942	30543	30543					0.07079429085740685
LPAARQTR	8	Unmodified	_LPAARQTR_					0	0	0			REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF	REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7723693847656	2	456.772326	911.530098	0.49462	0.00022593	-0.43999	-0.00020098	0.054628	2.4953E-05	456.77213785927756	77.17	0.74751	77.138	76.852	77.599	-0.031334					57	26	3	0	0	0	0.4397	1	19881	19881		9.3474	1.4373	1	379700	+		24407	22064	13941	13942	30544	30544					0.07079429085740685
LPAARQTR	8	Unmodified	_LPAARQTR_					0	0	0			REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF	REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	456.772326	911.530098	0.30257	0.0001382	-0.1946	-8.8887E-05	0.10797	4.9317E-05	456.77228975411793	77.167	0.80582	77.167	76.858	77.663	0	0.020194	4.7928E-05	NaN	24.674	52	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	439120	+		24408	22064	13941	13942							0.07079429085740685
LPAARQTR	8	Unmodified	_LPAARQTR_					0	0	0			REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF	REV__ENST00000535200.1_1_12:120648776-120650425:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	456.772326	911.530098	0.26837	0.00012258	-0.058091	-2.6534E-05	0.21028	9.6049E-05	456.7723141770674	77.079	0.87724	77.135	76.833	77.71	0.055412	-0.011902	0.00017263	NaN	24.674	44	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	445850	+		24409	22064	13941	13942							0.07079429085740685
LPAASPWRPTD	11	Unmodified	_LPAASPWRPTD_					0	0	0		ENST00000332211.10_2_10:76970548-76973790:+|nuORF	ENST00000332211.10_2_10:76970548-76973790:+|nuORF	ENST00000332211.10_2_10:76970548-76973790:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5267639160156	3	404.212017	1209.61422	-0.37792	-0.00015276	-0.74867	-0.00030262	-1.1266	-0.00045538	404.2117581345468	15.235	0.39198	15.125	14.955	15.347	-0.10982					23	13	2	0	0	0	0.33287	1	994	994		2.8433	0.21205	1	39955			24410	9448	13942	13943	30545	30545					0.017799153919895616
LPADLRLSI	9	Unmodified	_LPADLRLSI_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2897033691406	2	499.305667	996.596781	0.3081	0.00015384	-0.14326	-7.1529E-05	0.16485	8.231E-05	499.3055813714412	63.009	0.57056	63.001	62.755	63.325	-0.0085526					32	20	3	0	0	0	0.24636	1	15537	15537		11.495	0	1	159700			24411	4987	13943	13944	30546	30546					0.09834619856997051
LPADPILEAL	10	Unmodified	_LPADPILEAL_					0	0	0			REV__ENST00000479810.6_1_21:42692883-42718146:+|nuORF	REV__ENST00000479810.6_1_21:42692883-42718146:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2902221679688	2	526.305332	1050.59611	0.76706	0.00040371	-0.74086	-0.00038992	0.026196	1.3787E-05	526.3050686511373	54.588	1.2632	54.572	54.03	55.293	-0.015923					122	45	4	0	0	0	0.35558	1	12894	12894		11.64	2.8949	1	4953900	+		24412	18288	13944	13945	30547	30547					0.07283780417287744
LPADRLLL	8	Unmodified	_LPADRLLL_					0	0	0		ENST00000430334.7_1_17:43528059-43530734:-|nuORF	ENST00000430334.7_1_17:43528059-43530734:-|nuORF	ENST00000430334.7_1_17:43528059-43530734:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.78961181640625	2	455.789653	909.564752	0.10966	4.9982E-05	1.5163	0.00069109	1.6259	0.00074107	455.7895591574993	57.847	1.0044	57.847	57.495	58.5	0					86	35	4	0	0	0	0.28276	1	14014	14014		32.786	0.33204	1	845560			24413	10464	13945	13946	30548	30548					0.1063525217384722
LPADRLLL	8	Unmodified	_LPADRLLL_					0	0	0		ENST00000430334.7_1_17:43528059-43530734:-|nuORF	ENST00000430334.7_1_17:43528059-43530734:-|nuORF	ENST00000430334.7_1_17:43528059-43530734:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.78955078125	2	455.789653	909.564752	0.19253	8.7753E-05	-0.11042	-5.0328E-05	0.08211	3.7425E-05	455.7895223358201	57.705	0.86983	57.791	57.491	58.36	0.085621					52	31	2	0	0	0	0.28276	1	13972	13972		32.786	0	1	736300			24414	10464	13945	13946	30549	30549					0.1063525217384722
LPADRLLL	8	Unmodified	_LPADRLLL_					0	0	0		ENST00000430334.7_1_17:43528059-43530734:-|nuORF	ENST00000430334.7_1_17:43528059-43530734:-|nuORF	ENST00000430334.7_1_17:43528059-43530734:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.78955078125	2	455.789653	909.564752	0.14134	6.4422E-05	0.0039518	1.8012E-06	0.14529	6.6224E-05	455.78957846707505	57.815	0.93985	57.798	57.443	58.383	-0.017197					61	34	2	0	0	0	0.26862	1	14021	14021		34.402	0	1	881330			24415	10464	13945	13946	30550	30550					0.1063525217384722
LPADRRVTAL	10	Unmodified	_LPADRRVTAL_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3329467773438	2	556.332747	1110.65094	0.57498	0.00031988	-0.25059	-0.00013941	0.3244	0.00018047	556.3324418555914	32.491	0.58617	32.491	32.251	32.837	0					53	20	4	0	0	0	0.024835	1	6212	6212		66.457	38.828	1	431880			24416	423	13946	13947	30551	30551					0.10004212008561808
LPADRRVTAL	10	Unmodified	_LPADRRVTAL_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.332763671875	2	556.332747	1110.65094	0.61894	0.00034434	-0.36602	-0.00020363	0.25292	0.0001407	556.3324729061192	32.389	0.47097	32.444	32.233	32.704	0.055313					39	16	3	0	0	0	0.35637	1	6179	6179		11.495	0	1	545340			24417	423	13946	13947	30552	30552					0.10004212008561808
LPADRRVTAL	10	Unmodified	_LPADRRVTAL_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	556.332747	1110.65094	0.28343	0.00015768	0.0074027	4.1183E-06	0.29083	0.0001618	556.3326015585834	32.405	0.46239	32.46	32.247	32.71	0.054371	-0.005161	0.00026018	NaN	66.457	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	423560			24418	423	13946	13947							0.10004212008561808
LPAEAHPPSL	10	Unmodified	_LPAEAHPPSL_					0	0	0		ENST00000319977.8_1_17:42219400-42225280:+|nuORF	ENST00000319977.8_1_17:42219400-42225280:+|nuORF	ENST00000319977.8_1_17:42219400-42225280:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.7982788085938	2	516.279649	1030.54475	0.41212	0.00021277	0.21211	0.00010951	0.62423	0.00032228	516.2798014838287	44.741	0.40437	44.816	44.531	44.935	0.075047					18	14	2	0	0	0	0.30079	1	9906	9906		20.454	0	1	99657			24419	9373	13947	13948	30553	30553					0.030694564432451443
LPAEEEVRARL	11	Unmodified	_LPAEEEVRARL_					0	0	0		ENSG00000120875|ENST00000240100|DUSP4	ENSG00000120875|ENST00000240100|DUSP4	ENSG00000120875|ENST00000240100|DUSP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.86328125	2	641.859326	1281.7041	-0.01128	-7.2404E-06	0.14322	9.193E-05	0.13194	8.4689E-05	641.8597453464644	103.26	0.70338	103.26	102.85	103.56	0					592	102	7	0	0	0	0.46059	1	27465	27465		3.2813	1.7994	1	107790000			24420	2971	13948	13949	30554	30554					0.07451545000549231
LPAEFLYRI	9	Unmodified	_LPAEFLYRI_					0	0	0		nc|nan|Q9H0W9-3|C11orf54;nc|nan|Q9H0W9-2|C11orf54;ENSG00000182919|ENST00000354421|C11orf54;nc|nan|Q9H0W9-4|C11orf54	nc|nan|Q9H0W9-3|C11orf54	nc|nan|Q9H0W9-3|C11orf54	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.292724609375	2	561.321317	1120.62808	0.35107	0.00019706	-0.12982	-7.2871E-05	0.22125	0.00012419	561.3212748070322	68.172	0.46483	68.244	67.969	68.434	0.071938					25	16	2	0	0	0	0.1558	1	17151	17151		41.956	9.8386	1	308350			24421	7333	13949	13950	30555	30555					0.07259192891092425
LPAELGPQL	9	Unmodified	_LPAELGPQL_					0	0	0		ENST00000509220.1_1_4:47462124-47465668:-|nuORF;ENSG00000169019|ENST00000381571|COMMD8	ENST00000509220.1_1_4:47462124-47465668:-|nuORF	ENST00000509220.1_1_4:47462124-47465668:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2714538574219	2	469.271293	936.528032	0.10134	4.7556E-05	-0.21365	-0.00010026	-0.11231	-5.2706E-05	469.2710289813465	62.661	0.50711	62.661	62.476	62.984	0					20	18	2	0	0	0	0.063853	1	15502	15502		47.749	26.002	1	129390			24422	6321	13950	13951	30556	30556					0.057229555572689605
LPAELINQI	9	Unmodified	_LPAELINQI_					0	0	0		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.79791259765625	2	505.797675	1009.5808	0.16907	8.5515E-05	-0.12761	-6.4544E-05	0.041461	2.0971E-05	505.7977004422378	69.351	2.1773	69.351	68.786	70.963	0					176	78	4	0	0	0	0.0028127	1	17523	17523		103.75	45.069	1	6652600			24423	5496	13951	13952	30557	30557					0.07638913620087351
LPAELINQI	9	Unmodified	_LPAELINQI_					0	0	0		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7978210449219	2	505.797675	1009.5808	0.25338	0.00012816	-0.1876	-9.4887E-05	0.065778	3.3271E-05	505.7976711808174	69.29	2.08	69.356	68.643	70.723	0.066048					188	74	6	0	0	0	0.00070271	1	17498	17498		126.57	41.294	1	7334600			24424	5496	13951	13952	30558	30558					0.07638913620087351
LPAELINQI	9	Unmodified	_LPAELINQI_					0	0	0		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.7978515625	2	505.797675	1009.5808	0.21323	0.00010785	-0.14033	-7.0981E-05	0.072893	3.6869E-05	505.79767637897925	69.399	1.6744	69.377	68.736	70.41	-0.022087					156	60	5	0	0	0	0.00012782	1	17520	17520		136.33	54.72	1	6680300			24425	5496	13951	13952	30559	30559					0.07638913620087351
LPAENKYIAT	10	Unmodified	_LPAENKYIAT_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3065185546875	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.214	1	88.303	87.803	88.803	0.089195								0	0	0	0.37739	1	23287	23287		3.2813	0	1				24426	1112	13952	13953	30560	30560					0.04261994786179457
LPAEVLDSL	9	Unmodified	_LPAEVLDSL_					0	0	0		ENSG00000120708|ENST00000442011|TGFBI	ENSG00000120708|ENST00000442011|TGFBI	ENSG00000120708|ENST00000442011|TGFBI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.3127136230469	2	478.768583	955.522613	0.21115	0.00010109	-1.0756	-0.00051497	-0.86448	-0.00041388	478.7682917220184	71.302	0.4485	71.302	71.043	71.491	0					25	15	2	0	0	0	0.16284	1	18116	18116		37.974	3.8716	1	283560			24427	2960	13953	13954	30561	30561					0.04307231974826209
LPAEVLDSL	9	Unmodified	_LPAEVLDSL_					0	0	0		ENSG00000120708|ENST00000442011|TGFBI	ENSG00000120708|ENST00000442011|TGFBI	ENSG00000120708|ENST00000442011|TGFBI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.31304931640625	2	478.768583	955.522613	0.35419	0.00016957	-1.2386	-0.000593	-0.88441	-0.00042343	478.7682520546128	71.326	0.437	71.301	71.103	71.54	-0.024872					26	15	2	0	0	0	0.074331	1	18104	18104		61.357	6.5839	1	253290			24428	2960	13953	13954	30562	30562					0.04307231974826209
LPAEWRTSC	9	Unmodified	_LPAEWRTSC_					0	0	0		ENSG00000126773|ENST00000406854|PCNX4;ENST00000483571.5_1_14:60582139-60592559:+|nuORF	ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.31884765625	2	531.755484	1061.49641	0.4247	0.00022584	-0.41219	-0.00021919	0.012507	6.6508E-06	531.7550793179736	75.313	0.40418	75.365	75.131	75.536	0.052368					19	14	2	0	0	0	0.25323	1	19347	19347		10.074	2.1638	1	104270			24429	3287	13954	13955	30563	30563					-0.03187360468314182
LPAEWRTSC	9	Unmodified	_LPAEWRTSC_					0	0	0		ENSG00000126773|ENST00000406854|PCNX4;ENST00000483571.5_1_14:60582139-60592559:+|nuORF	ENSG00000126773|ENST00000406854|PCNX4	ENSG00000126773|ENST00000406854|PCNX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3187255859375	2	531.755484	1061.49641	0.66558	0.00035393	-0.96736	-0.0005144	-0.30178	-0.00016047	531.7547338475397	75.343	0.34132	75.312	75.184	75.525	-0.031487					15	12	2	0	0	0	0.24688	1	19402	19402		10.074	1.3285	1	114370			24430	3287	13954	13955	30564	30564					-0.03187360468314182
LPAFIEKSI	9	Unmodified	_LPAFIEKSI_					0	0	0			REV__nc|ENSG00000168952|Q8NFX7-2|STXBP6	REV__nc|ENSG00000168952|Q8NFX7-2|STXBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3117980957031	2	509.302593	1016.59063	0.49441	0.00025181	-0.83505	-0.00042529	-0.34064	-0.00017349	509.80360640068517	84.162	0.57317	84.239	84.097	84.671	0.077095					44	22	3	0	0	0	0.17277	1	22113	22113		27.629	0.74515	1	188970	+		24431	17491	13955	13956	30565	30565					0.08300101625468415
LPAFIEKSI	9	Unmodified	_LPAFIEKSI_					0	0	0			REV__nc|ENSG00000168952|Q8NFX7-2|STXBP6	REV__nc|ENSG00000168952|Q8NFX7-2|STXBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3116149902344	2	509.302593	1016.59063	0.47583	0.00024234	-0.52442	-0.00026709	-0.048596	-2.475E-05	509.8035434166801	84.318	1.1205	84.301	84.072	85.192	-0.016823					74	45	3	0	0	0	0.19747	1	22135	22135		24.021	2.2739	1	181580	+		24432	17491	13955	13956	30566	30566					0.08300101625468415
LPAFVRVV	8	Unmodified	_LPAFVRVV_					0	0	0		ENSG00000147050|ENST00000611820|KDM6A;nc|ENSG00000147050|O15550|KDM6A;ENST00000484732.1_1_X:44942711-44945225:+|nuORF	ENSG00000147050|ENST00000611820|KDM6A	ENSG00000147050|ENST00000611820|KDM6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.2489013671875	2	450.786913	899.559273	0.22931	0.00010337	0.060272	2.717E-05	0.28958	0.00013054	450.78675423439336	58.883	0.58651	58.883	58.468	59.055	0					33	19	3	0	0	0	0.26527	1	14289	14289		36.044	16.605	1	269600			24433	4742	13956	13957	30567	30567					0.10547573382041264
LPAFVRVV	8	Unmodified	_LPAFVRVV_					0	0	0		ENSG00000147050|ENST00000611820|KDM6A;nc|ENSG00000147050|O15550|KDM6A;ENST00000484732.1_1_X:44942711-44945225:+|nuORF	ENSG00000147050|ENST00000611820|KDM6A	ENSG00000147050|ENST00000611820|KDM6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2487487792969	2	450.786913	899.559273	0.2358	0.0001063	-0.084774	-3.8215E-05	0.15103	6.8083E-05	450.7867859976354	58.671	0.56023	58.762	58.393	58.953	0.091305					31	19	2	0	0	0	0.33993	1	14212	14212		16.942	11.182	1	260780			24434	4742	13956	13957	30568	30568					0.10547573382041264
LPAFVRVV	8	Unmodified	_LPAFVRVV_					0	0	0		ENSG00000147050|ENST00000611820|KDM6A;nc|ENSG00000147050|O15550|KDM6A;ENST00000484732.1_1_X:44942711-44945225:+|nuORF	ENSG00000147050|ENST00000611820|KDM6A	ENSG00000147050|ENST00000611820|KDM6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.24884033203125	2	450.786913	899.559273	0.32632	0.0001471	-0.012136	-5.4708E-06	0.31418	0.00014163	450.78679011838176	58.868	0.45174	58.853	58.553	59.005	-0.014267					26	15	2	0	0	0	0.28969	1	14314	14314		28.487	2.1456	1	291690			24435	4742	13956	13957	30569	30569					0.10547573382041264
LPAGADVKARS	11	Unmodified	_LPAGADVKARS_					0	0	0		ENSG00000183098|ENST00000377047|GPC6	ENSG00000183098|ENST00000377047|GPC6	ENSG00000183098|ENST00000377047|GPC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8087768554688	2	542.809105	1083.60366	0.24369	0.00013228	-1.2292	-0.00066724	-0.98555	-0.00053497	542.8082144251272	81.377	0.67534	81.446	81.027	81.703	0.068993					53	33	2	0	0	0	0.44523	1	21152	21152		5.2969	0.066215	1	184060			24436	7346	13957	13958	30570	30570					0.06519932737569434
LPAGAGPSPTF	11	Unmodified	_LPAGAGPSPTF_					0	0	0		ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2846374511719	2	507.766374	1013.5182	0.035504	1.8028E-05	-3.1731	-0.0016112	-3.1376	-0.0015932	507.76503953446576	34.354	0.36829	34.354	34.104	34.472	0					19	12	2	0	0	0	0.32477	1	6787	6787		16.149	2.6412	1	74871			24437	7155	13958	13959	30571	30571					0.011977675518892283
LPAGAGPSPTF	11	Unmodified	_LPAGAGPSPTF_					0	0	0		ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.766374	1013.5182	0.11409	5.793E-05	-3.1979	-0.0016238	-3.0838	-0.0015659	507.76465937249213	34.148	0.44262	34.215	34.021	34.463	0.066704	-0.069758	-1.8281E-05	NaN	11.495	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80127			24438	7155	13958	13959							0.011977675518892283
LPAGVSWL	8	Unmodified	_LPAGVSWL_					0	0	0		ENSG00000283434|ENST00000637986|CSNKA2IP	ENSG00000283434|ENST00000637986|CSNKA2IP	ENSG00000283434|ENST00000637986|CSNKA2IP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7514343261719	2	421.742171	841.469789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.228	1	67.212	66.712	67.712	-0.016296								0	0	0	0.35014	1	16858	16858		14.582	0	1				24439	8759	13959	13960	30572	30572					0.04271318702649296
LPAGWNNNK	9	Unmodified	_LPAGWNNNK_					0	0	0		ENSG00000125818|ENST00000335877|PSMF1	ENSG00000125818|ENST00000335877|PSMF1	ENSG00000125818|ENST00000335877|PSMF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2615051269531	2	507.261791	1012.50903	0.16574	8.4075E-05	-0.54833	-0.00027815	-0.38259	-0.00019407	507.26146585915467	61.63	0.71593	61.63	61.335	62.051	0					46	26	2	0	0	0	0.25989	1	15140	15140		14.838	0	1	772770			24440	3232	13960	13961	30573	30573					0.0032741898621679866
LPAGWNNNK	9	Unmodified	_LPAGWNNNK_					0	0	0		ENSG00000125818|ENST00000335877|PSMF1	ENSG00000125818|ENST00000335877|PSMF1	ENSG00000125818|ENST00000335877|PSMF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.261791	1012.50903	0.16574	8.4075E-05	-0.54833	-0.00027815	-0.38259	-0.00019407	507.26146585915467	61.63	0.71593	61.63	61.335	62.051	0	0.076373	-8.6899E-06	NaN	14.838	46	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	772770			24441	3232	13960	13961							0.0032741898621679866
LPAGWNNNK	9	Unmodified	_LPAGWNNNK_					0	0	0		ENSG00000125818|ENST00000335877|PSMF1	ENSG00000125818|ENST00000335877|PSMF1	ENSG00000125818|ENST00000335877|PSMF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.261791	1012.50903	-0.015765	-7.997E-06	-1.1315	-0.00057397	-1.1473	-0.00058197	507.261537789542	61.519	0.87494	61.51	61.133	62.008	-0.0094528	-0.044371	-0.00060033	NaN	14.838	62	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	768870			24442	3232	13960	13961							0.0032741898621679866
LPAHAGEVL	9	Unmodified	_LPAHAGEVL_					0	0	0		ENST00000256495.3_1_3:5025100-5025229:+|nuORF	ENST00000256495.3_1_3:5025100-5025229:+|nuORF	ENST00000256495.3_1_3:5025100-5025229:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7376708984375	2	453.75581	905.497067	0.29289	0.0001329	0.009993	4.5344E-06	0.30288	0.00013743	453.75558758031593	45.041	0.94427	45.041	44.802	45.746	0					60	34	2	0	0	0	0.18943	1	10224	10224		30.225	7.0764	1	457500			24443	8930	13961	13962	30574	30574					0.04053802243049631
LPAHAVII	8	Unmodified	_LPAHAVII_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.26580810546875	2	417.265813	832.517074	0.39774	0.00016596	-0.042376	-1.7682E-05	0.35536	0.00014828	417.26565157084394	45.502	0.86788	45.562	45.282	46.15	0.059834					64	30	4	0	0	0	0.052153	1	10161	10161		77.196	13.115	1	2228300			24444	2426	13962	13963	30575	30575					0.09411597973667085
LPAHAVII	8	Unmodified	_LPAHAVII_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.2657470703125	2	417.265813	832.517074	0.31063	0.00012962	0.16404	6.8449E-05	0.47467	0.00019807	417.26567846728295	45.537	0.92513	45.602	45.302	46.227	0.065048					72	33	4	0	0	0	0.079765	1	10157	10157		64.081	11.747	1	2255300			24445	2426	13962	13963	30576	30576					0.09411597973667085
LPAHLRYLL	9	Unmodified	_LPAHLRYLL_					0	0	0		ENSG00000183307|ENST00000331437|TMEM121B;nc|ENSG00000183307|Q9BXQ6-2|TMEM121B	ENSG00000183307|ENST00000331437|TMEM121B	ENSG00000183307|ENST00000331437|TMEM121B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.345947265625	2	548.337301	1094.66005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.762	1	84.749	84.249	85.249	-0.01284								0	0	0	0.24522	1	22223	22223		7.9102	1.187	1				24446	7357	13963	13964	30577	30577					0.11650605364911826
LPAHPGAEV	9	Unmodified	_LPAHPGAEV_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	446.23199462890625	2	445.74016	889.465767	0.2279	0.00010158	-0.21767	-9.7023E-05	0.01023	4.5598E-06	445.7401083055089	29.934	1.0066	29.947	29.5	30.507	0.012266					78	34	4	0	0	0	0.1659	1	5360	5360		36.044	9.1605	1	709560			24447	2390	13964	13965	30578	30578					0.016612292089462244
LPAHPGAEV	9	Unmodified	_LPAHPGAEV_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.2320251464844	2	445.74016	889.465767	0.0054236	2.4175E-06	-0.0082942	-3.6971E-06	-0.0028706	-1.2795E-06	445.7401675069124	29.949	1.0358	29.962	29.481	30.516	0.013474					60	35	3	0	0	0	0.19839	1	5363	5363		28.487	8.0332	1	703290			24448	2390	13964	13965	30579	30579					0.016612292089462244
LPAILQQV	8	Unmodified	_LPAILQQV_					0	0	0		ENSG00000182087|ENST00000356663|TMEM259;ENST00000592618.5_1_19:1010351-1011343:-|nuORF	ENSG00000182087|ENST00000356663|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2763366699219	2	441.276378	880.538203	0.22913	0.00010111	0.0018493	8.1604E-07	0.23098	0.00010193	441.2762270581302	68.76	1.369	68.76	67.97	69.339	0					111	50	3	0	0	0	0.004968	3	17324	17275;17324;17375		127.54	45.673	1	1240200			24449	7267	13965	13966	30580;30581;30582	30581					0.09315563282518724
LPAILQQV	8	Unmodified	_LPAILQQV_					0	0	0		ENSG00000182087|ENST00000356663|TMEM259;ENST00000592618.5_1_19:1010351-1011343:-|nuORF	ENSG00000182087|ENST00000356663|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2763977050781	2	441.276378	880.538203	0.12647	5.5809E-05	0.022415	9.8911E-06	0.14889	6.57E-05	441.27625043486273	68.694	1.2457	68.766	68.044	69.29	0.071938					107	45	3	0	0	0	0.012657	4	17325	17231;17281;17325;17378		112.56	34.114	1	1400500			24450	7267	13965	13966	30583;30584;30585;30586	30585					0.09315563282518724
LPAILQQV	8	Unmodified	_LPAILQQV_					0	0	0		ENSG00000182087|ENST00000356663|TMEM259;ENST00000592618.5_1_19:1010351-1011343:-|nuORF	ENSG00000182087|ENST00000356663|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.27630615234375	2	441.276378	880.538203	0.21915	9.6706E-05	-0.15417	-6.8031E-05	0.064982	2.8675E-05	441.2761724401633	68.767	1.4169	68.748	67.938	69.355	-0.019157					104	50	3	0	0	0	0.012657	3	17350	17299;17350;17403		112.56	34.114	1	1272000			24451	7267	13965	13966	30587;30588;30589	30588					0.09315563282518724
LPAKHGQRR	9	Unmodified	_LPAKHGQRR_					0	0	0		ENST00000590563.1_1_17:42117584-42117671:-|nuORF	ENST00000590563.1_1_17:42117584-42117671:-|nuORF	ENST00000590563.1_1_17:42117584-42117671:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8161010742188	2	531.817599	1061.62064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.759	1	85.844	85.344	86.344	0.084251								0	0	0	0.24522	1	22534	22534		7.9102	0	1				24452	12172	13966	13967	30590	30590					0.09229898134049108
LPAKRKLD	8	Unmodified	_LPAKRKLD_					0	0	0		ENSG00000007968|ENST00000361729|E2F2	ENSG00000007968|ENST00000361729|E2F2	ENSG00000007968|ENST00000361729|E2F2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.80035400390625	2	470.800552	939.58655	0.020528	9.6647E-06	-0.19046	-8.9669E-05	-0.16993	-8.0005E-05	470.8003649732284	18.006	0.66411	17.946	17.736	18.401	-0.059708					60	23	4	0	0	0	0.43302	1	1867	1867		11.64	1.5664	1	297500			24453	387	13967	13968	30591	30591					0.11434056922405489
LPALAKPF	8	Unmodified	_LPALAKPF_					0	0	0			REV__ENSG00000100401|ENST00000356244|RANGAP1	REV__ENSG00000100401|ENST00000356244|RANGAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2684020996094	2	428.768189	855.521825	-0.0068564	-2.9398E-06	-4.2647	-0.0018286	-4.2716	-0.0018315	428.7664091115361	38.413	0.35566	38.504	38.347	38.702	0.090881					20	12	2	0	0	0	0.31375	1	7999	7999		26.341	0.94196	1	252990	+		24454	14192	13968	13969	30592	30592					0.08828482116427949
LPALCVLIHHT	11	Unmodified	_LPALCVLIHHT_					0	0	0		ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	ENSG00000186432|ENST00000334256|KPNA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8478393554688	2	608.847176	1215.6798	0.44164	0.00026889	0.88229	0.00053718	1.3239	0.00080608	608.8479144520629	86.996	1.3066	86.99	86.132	87.439	-0.0056229					66	53	2	0	0	0	0.46277	1	22881	22881		2.9952	0	1	205800			24455	7613	13969	13970	30593	30593					0.08058613313346541
LPALEIWLQR	10	Unmodified	_LPALEIWLQR_					0	0	0			REV__ENSG00000261609|ENST00000648994|GAN	REV__ENSG00000261609|ENST00000648994|GAN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8696899414062	2	619.866423	1237.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.56	1	102.56	102.06	103.06	-0.0033646								0	0	0	0.3773	1	27313	27313		3.2813	0.28607	1		+		24456	19284	13970	13971	30594	30594					0.10894242219501393
LPALGWNCL	9	Unmodified	_LPALGWNCL_					0	0	0		ENSG00000180739|ENST00000333430|S1PR5;nc|ENSG00000180739|Q9H228-2|S1PR5	ENSG00000180739|ENST00000333430|S1PR5;nc|ENSG00000180739|Q9H228-2|S1PR5	nc|ENSG00000180739|Q9H228-2|S1PR5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7669982910156	2	493.760038	985.505523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.902	1	24.902	24.402	25.402	0								0	0	0	0.20238	1	3890	3890		21.747	0.87544	1				24457	7197;12868	13971	13972	30595	30595					0.012190328880137713
LPALHKDR	8	Unmodified	_LPALHKDR_					0	0	0		nc|ENSG00000164920|Q8N2R0-2|OSR2;ENSG00000164920|ENST00000297565|OSR2;nc|ENSG00000164920|Q8N2R0-3|OSR2	nc|ENSG00000164920|Q8N2R0-2|OSR2	nc|ENSG00000164920|Q8N2R0-2|OSR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.2824401855469	2	475.282526	948.550499	0.096456	4.5844E-05	0.071469	3.3968E-05	0.16793	7.9812E-05	475.28244449806465	27.287	0.60517	27.275	27.07	27.675	-0.01156					44	20	3	0	0	0	0.42077	1	4661	4661		15.847	1.9411	1	398690			24458	5899	13972	13973	30596	30596					0.07416599745567964
LPALLQQL	8	Unmodified	_LPALLQQL_					0	0	0		nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A;nc|ENSG00000179262|P54725-2|RAD23A;LTR2752_dup121|chr7:135263151-135264133:-|1.6065116481286288|0.0665708146513393|4.59|523.0|23|3|sense	nc|ENSG00000179262|P54725-3|RAD23A	nc|ENSG00000179262|P54725-3|RAD23A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2840576171875	2	448.284203	894.553853	0.18512	8.2986E-05	-0.37318	-0.00016729	-0.18806	-8.4306E-05	448.28396441572056	75.411	1.4628	75.411	74.679	76.141	0					143	52	4	0	0	0	0.00095863	5	19381	19261;19336;19381;19427;19476		144.66	0	1	4436000			24459	7111	13973	13974	30597;30598;30599;30600;30601	30599					0.10235849799562402
LPALLQQL	8	Unmodified	_LPALLQQL_					0	0	0		nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A;nc|ENSG00000179262|P54725-2|RAD23A;LTR2752_dup121|chr7:135263151-135264133:-|1.6065116481286288|0.0665708146513393|4.59|523.0|23|3|sense	nc|ENSG00000179262|P54725-3|RAD23A	nc|ENSG00000179262|P54725-3|RAD23A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	448.284203	894.553853	0.20844	9.3442E-05	-0.41463	-0.00018587	-0.20618	-9.2429E-05	448.283948655604	75.361	1.5198	75.413	74.64	76.16	0.052361	-0.0020801	3.1685E-05	NaN	144.66	151	55	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4441200			24460	7111	13973	13974							0.10235849799562402
LPALLQQL	8	Unmodified	_LPALLQQL_					0	0	0		nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A;nc|ENSG00000179262|P54725-2|RAD23A;LTR2752_dup121|chr7:135263151-135264133:-|1.6065116481286288|0.0665708146513393|4.59|523.0|23|3|sense	nc|ENSG00000179262|P54725-3|RAD23A	nc|ENSG00000179262|P54725-3|RAD23A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	448.284203	894.553853	0.40654	0.00018225	-0.60407	-0.0002708	-0.19753	-8.8551E-05	448.28384952082246	75.453	1.4638	75.422	74.613	76.077	-0.031487	0.0066328	-0.00013817	NaN	144.66	158	53	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3733300			24461	7111	13973	13974							0.10235849799562402
LPALPLAEL	9	Unmodified	_LPALPLAEL_					0	0	0		nc|ENSG00000094880|Q9UJX2-2|CDC23;ENST00000482948.5_1_5:137536747-137548896:-|nuORF;ENSG00000094880|ENST00000394886|CDC23	nc|ENSG00000094880|Q9UJX2-2|CDC23	nc|ENSG00000094880|Q9UJX2-2|CDC23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.79168701171875	2	468.791861	935.569169	0.25495	0.00011952	-0.15755	-7.3858E-05	0.097399	4.566E-05	468.791812605237	85.19	0.57029	85.19	84.871	85.441	0					36	21	2	0	0	0	0.11517	1	22372	22372		36.044	19.102	1	235020			24462	1440	13974	13975	30602	30602					0.09880716596740058
LPALPLAEL	9	Unmodified	_LPALPLAEL_					0	0	0		nc|ENSG00000094880|Q9UJX2-2|CDC23;ENST00000482948.5_1_5:137536747-137548896:-|nuORF;ENSG00000094880|ENST00000394886|CDC23	nc|ENSG00000094880|Q9UJX2-2|CDC23	nc|ENSG00000094880|Q9UJX2-2|CDC23	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	468.791861	935.569169	0.3024	0.00014176	-0.061735	-2.8941E-05	0.24066	0.00011282	468.79179643623104	85.123	0.4753	85.204	84.912	85.388	0.080887	0.022039	7.016E-05	NaN	36.044	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167200			24463	1440	13974	13975							0.09880716596740058
LPALPQQLI	9	Unmodified	_LPALPQQLI_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.8108215332031	2	496.810585	991.606617	0.31183	0.00015492	0.44398	0.00022057	0.75581	0.00037549	496.8106981530542	76.418	0.84184	76.418	76.141	76.983	0					90	30	4	0	0	0	0.013258	3	19676	19634;19676;19770		74.423	23.568	1	4258000			24464	5669	13975	13976	30603;30604;30605	30604					0.1104780786236006
LPALPQQLI	9	Unmodified	_LPALPQQLI_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.810791015625	2	496.810585	991.606617	0.2118	0.00010523	0.53027	0.00026344	0.74207	0.00036867	496.8107656881619	76.363	0.76228	76.416	76.189	76.951	0.053421					83	26	4	0	0	0	0.0061338	3	19663	19618;19663;19707		85.357	25.249	1	4198300			24465	5669	13975	13976	30606;30607;30608	30607					0.1104780786236006
LPALPQQLI	9	Unmodified	_LPALPQQLI_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.81085205078125	2	496.810585	991.606617	0.4599	0.00022849	0.38133	0.00018945	0.84124	0.00041793	496.8106512587169	76.438	0.82263	76.406	76.137	76.96	-0.031487					89	30	5	0	0	0	0.0061338	4	19682	19636;19682;19727;19777		85.357	24.967	1	4286700			24466	5669	13975	13976	30609;30610;30611;30612	30610					0.1104780786236006
LPALPTQAL	9	Unmodified	_LPALPTQAL_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A;ENST00000342409.3_1_10:13735712-14050160:-|nuORF	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.28155517578125	2	462.28166	922.548768	0.023291	1.0767E-05	-0.15338	-7.0904E-05	-0.13009	-6.0137E-05	462.2814924459648	67.882	0.61707	67.882	67.561	68.178	0					45	21	3	0	0	0	0.019245	1	17049	17049		65.235	25.278	1	532070			24467	4964	13976	13977	30613	30613					0.0843954593693752
LPALPTQAL	9	Unmodified	_LPALPTQAL_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A;ENST00000342409.3_1_10:13735712-14050160:-|nuORF	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.28167724609375	2	462.28166	922.548768	0.20063	9.2747E-05	0.001088	5.0295E-07	0.20172	9.325E-05	462.2815438909427	67.768	0.69994	67.846	67.546	68.246	0.078041					50	24	3	0	0	0	0.019896	1	17017	17017		64.236	24.279	1	521970			24468	4964	13976	13977	30614	30614					0.0843954593693752
LPALPTQAL	9	Unmodified	_LPALPTQAL_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A;ENST00000342409.3_1_10:13735712-14050160:-|nuORF	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	462.28166	922.548768	0.15562	7.1941E-05	-0.13926	-6.4377E-05	0.016362	7.5637E-06	462.281501448086	67.894	0.6069	67.878	67.593	68.2	-0.016304	0.0092902	-4.5821E-05	NaN	65.235	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	543850			24469	4964	13976	13977							0.0843954593693752
LPALRAPSR	9	Unmodified	_LPALRAPSR_					0	0	0		ENST00000338779.10_1_16:70714719-70719815:-|nuORF	ENST00000338779.10_1_16:70714719-70719815:-|nuORF	ENST00000338779.10_1_16:70714719-70719815:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.8038024902344	2	490.803626	979.592698	0.18827	9.2402E-05	0.19544	9.5924E-05	0.38371	0.00018833	490.80363000446846	28.602	0.71695	28.602	28.207	28.924	0					59	24	3	0	0	0	0.14076	1	4999	4999		32.305	0	1	580330			24470	9506	13977	13978	30615	30615					0.10208575153933452
LPALRAPSR	9	Unmodified	_LPALRAPSR_					0	0	0		ENST00000338779.10_1_16:70714719-70719815:-|nuORF	ENST00000338779.10_1_16:70714719-70719815:-|nuORF	ENST00000338779.10_1_16:70714719-70719815:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.80352783203125	2	490.803626	979.592698	0.18904	9.2781E-05	0.31035	0.00015232	0.49939	0.0002451	490.80369256496465	28.573	0.90253	28.569	28.055	28.957	-0.0042572					61	31	3	0	0	0	0.18803	1	4956	4956		25.399	0	1	543630			24471	9506	13977	13978	30616	30616					0.10208575153933452
LPALRAVIS	9	Unmodified	_LPALRAVIS_					0	0	0		nc|ENSG00000144278|Q8IUC8-2|GALNT13;ENSG00000144278|ENST00000392825|GALNT13;nc|ENSG00000144278|Q8IUC8-3|GALNT13	nc|ENSG00000144278|Q8IUC8-2|GALNT13	nc|ENSG00000144278|Q8IUC8-2|GALNT13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.30291748046875	2	470.302927	938.591301	0.33381	0.00015699	-0.23629	-0.00011113	0.09752	4.5864E-05	470.3027562771816	60.928	1.0048	60.928	60.175	61.18	0					77	36	4	0	0	0	0.047483	1	14962	14962		53.833	0.42879	1	2474100			24472	4571	13978	13979	30617	30617					0.11954941065175717
LPALRAVIS	9	Unmodified	_LPALRAVIS_					0	0	0		nc|ENSG00000144278|Q8IUC8-2|GALNT13;ENSG00000144278|ENST00000392825|GALNT13;nc|ENSG00000144278|Q8IUC8-3|GALNT13	nc|ENSG00000144278|Q8IUC8-2|GALNT13	nc|ENSG00000144278|Q8IUC8-2|GALNT13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.302490234375	2	470.302927	938.591301	0.3616	0.00017006	-0.25052	-0.00011782	0.11108	5.2239E-05	470.30273035655256	60.862	1.1415	60.959	60.107	61.248	0.096985					93	41	5	0	0	0	0.12642	1	14974	14974		34.402	0.95682	1	2244400			24473	4571	13978	13979	30618	30618					0.11954941065175717
LPALRAVIS	9	Unmodified	_LPALRAVIS_					0	0	0		nc|ENSG00000144278|Q8IUC8-2|GALNT13;ENSG00000144278|ENST00000392825|GALNT13;nc|ENSG00000144278|Q8IUC8-3|GALNT13	nc|ENSG00000144278|Q8IUC8-2|GALNT13	nc|ENSG00000144278|Q8IUC8-2|GALNT13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.3026428222656	2	470.302927	938.591301	0.47997	0.00022573	-0.29211	-0.00013738	0.18785	8.8348E-05	470.30266967524494	60.928	1.213	60.919	60.11	61.323	-0.0094566					86	44	3	0	0	0	0.063853	1	14977	14977		47.749	2.0088	1	2259000			24474	4571	13978	13979	30619	30619					0.11954941065175717
LPALRSIGL	9	Unmodified	_LPALRSIGL_					0	0	0		ENSG00000143171|ENST00000359842|RXRG;nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB;ENST00000483821.1_1_6:33162461-33163032:-|nuORF	ENSG00000143171|ENST00000359842|RXRG	ENSG00000143171|ENST00000359842|RXRG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.3028564453125	2	470.302927	938.591301	0.33381	0.00015699	-0.23629	-0.00011113	0.09752	4.5864E-05	470.3027562771816	60.928	1.0048	60.928	60.175	61.18	0					77	36	4	0	0	0	0.0054984	2	14908	14855;14908		86.332	17.227	1	2474100			24475	4485	13979	13980	30620;30621	30621					0.11954941065175717
LPALRSIGL	9	Unmodified	_LPALRSIGL_					0	0	0		ENSG00000143171|ENST00000359842|RXRG;nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB;ENST00000483821.1_1_6:33162461-33163032:-|nuORF	ENSG00000143171|ENST00000359842|RXRG	ENSG00000143171|ENST00000359842|RXRG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.3028259277344	2	470.302927	938.591301	0.3616	0.00017006	-0.25052	-0.00011782	0.11108	5.2239E-05	470.30273035655256	60.862	1.1415	60.959	60.107	61.248	0.096985					93	41	5	0	0	0	0.011693	3	14874	14820;14874;14921		76.825	16.751	1	2244400			24476	4485	13979	13980	30622;30623;30624	30623					0.11954941065175717
LPALRSIGL	9	Unmodified	_LPALRSIGL_					0	0	0		ENSG00000143171|ENST00000359842|RXRG;nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB;ENST00000483821.1_1_6:33162461-33163032:-|nuORF	ENSG00000143171|ENST00000359842|RXRG	ENSG00000143171|ENST00000359842|RXRG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.3028564453125	2	470.302927	938.591301	0.47997	0.00022573	-0.29211	-0.00013738	0.18785	8.8348E-05	470.30266967524494	60.928	1.213	60.919	60.11	61.323	-0.0094566					86	44	3	0	0	0	0.011693	3	14876	14827;14876;14922		76.825	20.648	1	2259000			24477	4485	13979	13980	30625;30626;30627	30626					0.11954941065175717
LPALSPAIRAW	11	Unmodified	_LPALSPAIRAW_					0	0	0		ENST00000356387.6_1_7:102079443-102079566:+|nuORF	ENST00000356387.6_1_7:102079443-102079566:+|nuORF	ENST00000356387.6_1_7:102079443-102079566:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8557739257812	2	597.853316	1193.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.427	1	96.505	96.005	97.005	0.077408								0	0	0	0.37609	1	25776	25776		2.4985	0.19575	1				24478	9622	13980	13981	30628	30628					0.10297973048022868
LPALSPAIRAW	11	Unmodified	_LPALSPAIRAW_					0	0	0		ENST00000356387.6_1_7:102079443-102079566:+|nuORF	ENST00000356387.6_1_7:102079443-102079566:+|nuORF	ENST00000356387.6_1_7:102079443-102079566:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8562622070312	2	597.853316	1193.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.825	1	94.823	94.323	95.323	-0.0020142								0	0	0	0.36517	1	25310	25310		4.897	1.9018	1				24479	9622	13980	13981	30629	30629					0.10297973048022868
LPALVAWV	8	Unmodified	_LPALVAWV_					0	0	0			REV__ENST00000522760.5_1_5:169700986-169724717:-|nuORF	REV__ENST00000522760.5_1_5:169700986-169724717:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7796325683594	2	434.768189	867.521825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.318	1	35.318	34.818	35.818	0								0	0	0	0.34461	1	7060	7060		17.087	0	1		+		24480	21919	13981	13982	30630	30630					0.08276482116411898
LPALVLKI	8	Unmodified	_LPALVLKI_					0	0	0		ENSG00000160602|ENST00000268766|NEK8	ENSG00000160602|ENST00000268766|NEK8	ENSG00000160602|ENST00000268766|NEK8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.80712890625	2	433.807314	865.600075	0.13469	5.8429E-05	-0.44046	-0.00019107	-0.30577	-0.00013265	433.8070245590894	67.705	0.62233	67.783	67.461	68.084	0.078041					33	21	2	0	0	0	0.19197	1	17035	17035		44.407	12.29	1	263050			24481	5473	13982	13983	30631	30631					0.16189914701647012
LPALVLKI	8	Unmodified	_LPALVLKI_					0	0	0		ENSG00000160602|ENST00000268766|NEK8	ENSG00000160602|ENST00000268766|NEK8	ENSG00000160602|ENST00000268766|NEK8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	433.807314	865.600075	-0.091088	-3.9515E-05	-0.14026	-6.0844E-05	-0.23134	-0.00010036	433.80715608240473	67.788	0.64944	67.788	67.398	68.048	0	0.017685	5.2179E-05	NaN	44.407	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245870			24482	5473	13982	13983							0.16189914701647012
LPALVLKI	8	Unmodified	_LPALVLKI_					0	0	0		ENSG00000160602|ENST00000268766|NEK8	ENSG00000160602|ENST00000268766|NEK8	ENSG00000160602|ENST00000268766|NEK8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	433.807314	865.600075	-0.12328	-5.348E-05	-0.056947	-2.4704E-05	-0.18023	-7.8185E-05	433.8071872377862	67.757	0.56436	67.74	67.478	68.043	-0.016296	-0.030286	0.00012446	NaN	44.407	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237730			24483	5473	13982	13983							0.16189914701647012
LPAPERERI	9	Unmodified	_LPAPERERI_					0	0	0		ENSG00000206262|ENST00000383165|FOXL2NB	ENSG00000206262|ENST00000383165|FOXL2NB	ENSG00000206262|ENST00000383165|FOXL2NB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3736572265625	2	540.811648	1079.60874	0.59429	0.0003214	-0.90841	-0.00049128	-0.31411	-0.00016988	540.8109982586227	39.289	0.58115	39.389	39.155	39.736	0.099407					40	20	3	0	0	0	0.24739	1	8200	8200		13.508	0.97634	1	574950			24484	8318	13983	13984	30632	30632					0.07212236600184951
LPAPIEKTI	9	Unmodified	_LPAPIEKTI_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.3028259277344	2	491.302593	980.590633	0.36678	0.0001802	0.028743	1.4121E-05	0.39552	0.00019432	491.3024942803792	46.084	1.3748	46.084	45.586	46.961	0					121	49	3	0	0	0	0.0024096	4	10367	10271;10318;10367;10412		106.94	32.517	1	9085400			24485	12934	13984	13985	30633;30634;30635;30636	30635					0.09956101625471092
LPAPIEKTI	9	Unmodified	_LPAPIEKTI_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.30279541015625	2	491.302593	980.590633	0.12273	6.0298E-05	0.055921	2.7474E-05	0.17865	8.7772E-05	491.3025307785235	46.03	1.4576	46.089	45.505	46.962	0.059834					144	52	5	0	0	0	0.0024096	5	10327	10228;10273;10327;10378;10431		106.94	35.807	1	10235000			24486	12934	13984	13985	30637;30638;30639;30640;30641	30639					0.09956101625471092
LPAPIEKTI	9	Unmodified	_LPAPIEKTI_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.30267333984375	2	491.302593	980.590633	0.38887	0.00019105	-0.22262	-0.00010937	0.16625	8.1681E-05	491.3023781152843	46.069	1.4533	46.134	45.595	47.048	0.065048					126	51	4	0	0	0	0.0010968	4	10341	10253;10296;10341;10391		121.53	35.807	1	10292000			24487	12934	13984	13985	30642;30643;30644;30645	30644					0.09956101625471092
LPAPLELNQ	9	Unmodified	_LPAPLELNQ_					0	0	0		ENST00000215912.9_3_22:31678754-31679060:-|nuORF	ENST00000215912.9_3_22:31678754-31679060:-|nuORF	ENST00000215912.9_3_22:31678754-31679060:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7897644042969	2	497.782025	993.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.455	1	60.55	60.05	61.05	0.095093								0	0	0	0.19534	1	14781	14781		24.021	0.87215	1				24488	8808	13985	13986	30646	30646					0.05246340585995313
LPAPPAPLL	9	Unmodified	_LPAPPAPLL_					0	0	0		nc|ENSG00000090539|Q9H2X0-2|CHRD;nc|ENSG00000090539|Q9H2X0-3|CHRD;ENST00000460627.5_1_3:184098106-184099814:+|nuORF;nc|ENSG00000090539|Q9H2X0-4|CHRD;nc|ENSG00000090539|Q9H2X0-5|CHRD;ENSG00000090539|ENST00000204604|CHRD	nc|ENSG00000090539|Q9H2X0-2|CHRD	nc|ENSG00000090539|Q9H2X0-2|CHRD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	444.7812805175781	2	444.781296	887.54804	0.33375	0.00014845	-0.17295	-7.6924E-05	0.1608	7.1523E-05	444.7811202379279	71.623	1.0819	71.623	71.292	72.374	0					100	38	4	0	0	0	0.0096669	1	18229	18229		79.935	12.522	1	2243900			24489	1382	13986	13987	30647	30647					0.09976751287888419
LPAPPAPLL	9	Unmodified	_LPAPPAPLL_					0	0	0		nc|ENSG00000090539|Q9H2X0-2|CHRD;nc|ENSG00000090539|Q9H2X0-3|CHRD;ENST00000460627.5_1_3:184098106-184099814:+|nuORF;nc|ENSG00000090539|Q9H2X0-4|CHRD;nc|ENSG00000090539|Q9H2X0-5|CHRD;ENSG00000090539|ENST00000204604|CHRD	nc|ENSG00000090539|Q9H2X0-2|CHRD	nc|ENSG00000090539|Q9H2X0-2|CHRD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	444.78125	2	444.781296	887.54804	0.1886	8.3887E-05	-0.010605	-4.7168E-06	0.178	7.917E-05	444.7811773779145	71.594	1.2228	71.651	71.319	72.542	0.056572					93	44	3	0	0	0	0.0040737	1	18223	18223		93.763	26.35	1	2014300			24490	1382	13986	13987	30648	30648					0.09976751287888419
LPAPPAPLL	9	Unmodified	_LPAPPAPLL_					0	0	0		nc|ENSG00000090539|Q9H2X0-2|CHRD;nc|ENSG00000090539|Q9H2X0-3|CHRD;ENST00000460627.5_1_3:184098106-184099814:+|nuORF;nc|ENSG00000090539|Q9H2X0-4|CHRD;nc|ENSG00000090539|Q9H2X0-5|CHRD;ENSG00000090539|ENST00000204604|CHRD	nc|ENSG00000090539|Q9H2X0-2|CHRD	nc|ENSG00000090539|Q9H2X0-2|CHRD	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	444.781296	887.54804	0.38689	0.00017208	-0.24759	-0.00011013	0.1393	6.1958E-05	444.78107407522697	71.619	1.0187	71.592	71.288	72.306	-0.027275	-0.029997	-9.6819E-05	NaN	93.763	86	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2419900			24491	1382	13986	13987							0.09976751287888419
LPAPPAPPVF	10	Unmodified	_LPAPPAPPVF_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.29217529296875	2	503.292028	1004.5695	0.43725	0.00022007	0.016443	8.2755E-06	0.45369	0.00022834	503.2921472780296	72.624	0.84447	72.624	72.374	73.218	0					59	30	3	0	0	0	0.21992	1	18576	18576		18.135	2.2878	1	461880			24492	4509	13987	13988	30649	30649					0.0674013631660273
LPAPPAPPVF	10	Unmodified	_LPAPPAPPVF_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.29229736328125	2	503.292028	1004.5695	0.41836	0.00021056	-0.0064737	-3.2581E-06	0.41189	0.0002073	503.2920639230601	72.582	0.7639	72.636	72.408	73.172	0.053841					49	27	2	0	0	0	0.13078	1	18507	18507		59.795	35.121	1	606990			24493	4509	13987	13988	30650	30650					0.0674013631660273
LPAPPAPPVF	10	Unmodified	_LPAPPAPPVF_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2922668457031	2	503.292028	1004.5695	0.46805	0.00023557	-0.20959	-0.00010548	0.25846	0.00013008	503.29204426046135	72.697	0.70004	72.667	72.426	73.126	-0.029305					53	24	3	0	0	0	0.13078	1	18541	18541		59.795	35.121	1	573450			24494	4509	13987	13988	30651	30651					0.0674013631660273
LPAPPEMRSPL	11	Unmodified	_LPAPPEMRSPL_					0	0	0			REV__nc|ENSG00000164877|Q8IY33-4|MICALL2	REV__nc|ENSG00000164877|Q8IY33-4|MICALL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.5693054199219	3	403.221636	1206.64308	-0.36318	-0.00014644	0.17635	7.1109E-05	-0.18683	-7.5334E-05	403.2220812784007	17.87	0.49315	17.753	17.545	18.038	-0.11739					35	16	3	0	0	0	0.46554	1	1836	1836		2.6312	0.54523	1	75674	+		24495	17182	13988	13989	30652	30652					0.048023166968050646
LPAPPTQNM	9	Oxidation (M)	_LPAPPTQNM(Oxidation (M))_		LPAPPTQNM(1)		LPAPPTQNM(72)	0	0	1		nc|ENSG00000184402|O75177-2|SS18L1;nc|ENSG00000141380|Q15532-2|SS18;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1;ENSG00000141380|ENST00000415083|SS18	nc|ENSG00000184402|O75177-2|SS18L1	nc|ENSG00000184402|O75177-2|SS18L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.253173828125	2	492.744585	983.474617	0.47585	0.00023447	0.080878	3.9852E-05	0.55673	0.00027432	492.7446718418341	36.225	0.78939	36.225	35.8	36.59	0					61	28	3	0	0	0	0.050251	1	7260	7260		71.922	28.064	1	685430			24496	4372	13989	13990	30653	30653		555			-0.01778165216887828
LPAPPTQNM	9	Oxidation (M)	_LPAPPTQNM(Oxidation (M))_		LPAPPTQNM(1)		LPAPPTQNM(48)	0	0	1		nc|ENSG00000184402|O75177-2|SS18L1;nc|ENSG00000141380|Q15532-2|SS18;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000184402|O75177-5|SS18L1;ENSG00000141380|ENST00000415083|SS18	nc|ENSG00000184402|O75177-2|SS18L1	nc|ENSG00000184402|O75177-2|SS18L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2528381347656	2	492.744585	983.474617	0.58642	0.00028896	0.10415	5.1318E-05	0.69057	0.00034028	492.7445712425508	36.081	0.83104	36.167	35.698	36.529	0.086246					55	29	3	0	0	0	0.12563	1	7194	7194		47.749	18.667	1	623460			24497	4372	13989	13990	30654	30654		555			-0.01778165216887828
LPAPRPSPRA	10	Unmodified	_LPAPRPSPRA_					0	0	0		ENST00000479650.5_1_9:140473228-140473261:-|nuORF	ENST00000479650.5_1_9:140473228-140473261:-|nuORF	ENST00000479650.5_1_9:140473228-140473261:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3148193359375	2	531.314358	1060.61416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.06	1	91.151	90.651	91.651	0.090668								0	0	0	0.37355	1	24155	24155		4.897	0.56777	1				24498	10994	13990	13991	30655	30655					0.08627960182661809
LPAPVKLIL	9	Unmodified	_LPAPVKLIL_					0	0	0		nc|ENSG00000155158|Q5VTQ0-7|TTC39B;ENST00000380853.1_1_9:15172019-15185442:-|nuORF;nc|ENSG00000155158|Q5VTQ0-5|TTC39B;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B	nc|ENSG00000155158|Q5VTQ0-7|TTC39B	nc|ENSG00000155158|Q5VTQ0-7|TTC39B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7712097167969	2	482.333696	962.652839	0.15905	7.6717E-05	0.03525	1.7002E-05	0.1943	9.3719E-05	482.3335767312652	67.493	0.35239	67.476	67.292	67.644	-0.016296					17	11	2	0	0	0	0.22596	1	16930	16930		21.747	3.6117	1	75767			24499	5161	13991	13992	30656	30656					0.17001872764478776
LPAQKSAF	8	Unmodified	_LPAQKSAF_					0	0	0			REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.8521423339844	2	431.245078	860.475603	-0.39267	-0.00016934	0.20306	8.7569E-05	-0.18961	-8.1769E-05	431.24505764542835	39.681	0.7021	39.681	39.43	40.132	0					39	25	2	0	0	0	0.34147	1	8472	8472		11.114	3.8252	1	425020	+		24500	14208	13992	13993	30657	30657					0.039784172143299656
LPAQPMISV	9	Oxidation (M)	_LPAQPM(Oxidation (M))ISV_		LPAQPM(1)ISV		LPAQPM(85)ISV	0	0	1		nc|ENSG00000117009|O15229-2|KMO;ENSG00000117009|ENST00000366559|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2652893066406	2	486.265153	970.515753	0.63272	0.00030767	-0.08855	-4.3059E-05	0.54417	0.00026461	486.2650136955804	55.764	1.5863	55.764	55.4	56.986	0					127	57	4	0	0	0	0.006189	3	13375	13323;13375;13428		85.272	35.002	1	6464500			24501	12670;12671	13993	13994	30658;30659;30660	30659		969			0.0293159582259932
LPAQPMISV	9	Oxidation (M)	_LPAQPM(Oxidation (M))ISV_		LPAQPM(1)ISV		LPAQPM(89)ISV	0	0	1		nc|ENSG00000117009|O15229-2|KMO;ENSG00000117009|ENST00000366559|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2654724121094	2	486.265153	970.515753	0.60598	0.00029467	-0.04103	-1.9952E-05	0.56495	0.00027471	486.2650589138158	55.763	1.1884	55.833	55.347	56.536	0.070889					109	43	4	0	0	0	0.004681	2	13303	13303;13349		88.954	58.317	1	7203200			24502	12670;12671	13993	13994	30661;30662	30661		969			0.0293159582259932
LPAQPMISV	9	Oxidation (M)	_LPAQPM(Oxidation (M))ISV_		LPAQPM(1)ISV		LPAQPM(65)ISV	0	0	1		nc|ENSG00000117009|O15229-2|KMO;ENSG00000117009|ENST00000366559|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.265380859375	2	486.265153	970.515753	0.58586	0.00028488	0.12101	5.8843E-05	0.70687	0.00034373	486.2650571496107	55.833	1.3504	55.814	55.379	56.729	-0.019077					111	49	4	0	0	0	0.019245	3	13349	13299;13349;13394		65.235	31.133	1	7028900			24503	12670;12671	13993	13994	30663;30664;30665	30664		969			0.0293159582259932
LPAQRRAT	8	Unmodified	_LPAQRRAT_					0	0	0		ENST00000512593.5_1_5:176817073-176817265:+|nuORF	ENST00000512593.5_1_5:176817073-176817265:+|nuORF	ENST00000512593.5_1_5:176817073-176817265:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7724304199219	2	456.772326	911.530098	0.23831	0.00010885	-0.15618	-7.1337E-05	0.082134	3.7516E-05	456.7723509390283	82.27	1.0787	82.248	81.687	82.766	-0.022568					69	42	2	0	0	0	0.44734	1	21471	21471		6.7232	0	1	579510			24504	11397	13994	13995	30666	30666					0.07079429085752054
LPARAALLE	9	Unmodified	_LPARAALLE_					0	0	0		ENSG00000078804|ENST00000374810|TP53INP2	ENSG00000078804|ENST00000374810|TP53INP2	ENSG00000078804|ENST00000374810|TP53INP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.28424072265625	2	477.292559	952.570566	0.3784	0.00018061	-0.016219	-7.741E-06	0.36219	0.00017287	477.2925258840687	48.215	0.81092	48.215	47.987	48.798	0					73	28	4	0	0	0	0.20344	1	11085	11085		23.148	6.2061	1	3202900			24505	1118	13995	13996	30667	30667					0.09238350685507157
LPARAALLE	9	Unmodified	_LPARAALLE_					0	0	0		ENSG00000078804|ENST00000374810|TP53INP2	ENSG00000078804|ENST00000374810|TP53INP2	ENSG00000078804|ENST00000374810|TP53INP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2843017578125	2	477.292559	952.570566	0.63513	0.00030314	-0.34214	-0.0001633	0.29299	0.00013984	477.292376210714	48.24	0.85968	48.287	47.994	48.854	0.04752					86	31	4	0	0	0	0.20344	1	11078	11078		23.148	3.8914	1	3316800			24506	1118	13995	13996	30668	30668					0.09238350685507157
LPARAALLE	9	Unmodified	_LPARAALLE_					0	0	0		ENSG00000078804|ENST00000374810|TP53INP2	ENSG00000078804|ENST00000374810|TP53INP2	ENSG00000078804|ENST00000374810|TP53INP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.28424072265625	2	477.292559	952.570566	0.48368	0.00023086	-0.060101	-2.8686E-05	0.42358	0.00020217	477.29249309091324	48.18	0.85275	48.224	47.987	48.839	0.043324					82	31	4	0	0	0	0.20344	1	11057	11057		23.148	2.6948	1	3386200			24507	1118	13995	13996	30669	30669					0.09238350685507157
LPARHPRHVR	10	Unmodified	_LPARHPRHVR_					0	0	0		ENST00000579152.1_1_17:17398683-17399571:-|nuORF	ENST00000579152.1_1_17:17398683-17399571:-|nuORF	ENST00000579152.1_1_17:17398683-17399571:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.373779296875	2	619.870697	1237.72684	0.26797	0.00016611	-1.1569	-0.00071715	-0.88896	-0.00055104	619.8689178591079	95.573	0.59771	95.57	95.147	95.745	-0.0038147					87	60	2	0	0	0	0.32132	1	25443	25443		1.4819	0	1	155640			24508	12067	13996	13997	30670	30670					0.11748653699328315
LPARLKMKRR	10	Unmodified	_LPARLKMKRR_					0	0	0			REV__EZH2|p.T386Lfs*44|1|0.06|ENSG00000106462|chr7:148817946-148817947|-/ATAAAGACCAGAGTTATCTCAAGAATGTGTAG|frameshift_variant	REV__EZH2|p.T386Lfs*44|1|0.06|ENSG00000106462|chr7:148817946-148817947|-/ATAAAGACCAGAGTTATCTCAAGAATGTGTAG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.377685546875	2	634.908433	1267.80231	-0.066834	-4.2433E-05	0.97699	0.0006203	0.91016	0.00057787	634.9093876977104	103.63	0.39386	103.63	103.56	103.95	0					96	55	2	0	0	0	0.32165	1	27589	27589		0.45834	0.057624	1	5447600	+		24509	22682	13997	13998	30671	30671					0.17912494835422876
LPARLPRAMV	10	Unmodified	_LPARLPRAMV_					0	0	0			REV__nc|ENSG00000164741|Q96QB1-6|DLC1	REV__nc|ENSG00000164741|Q96QB1-6|DLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3433227539062	2	562.342061	1122.66957	0.55229	0.00031058	1.2686	0.00071341	1.8209	0.001024	562.3426637628147	83.384	1.2369	83.384	82.9	84.137	0					125	48	4	0	0	0	0.39745	1	21910	21910		3.9444	3.9444	1	1994200	+		24510	23067	13998	13999	30672	30672					0.11314050378769025
LPARNKILMLS	11	Unmodified	_LPARNKILMLS_					0	0	0		ENST00000498611.5_1_22:50657979-50682900:-|nuORF;TUBGCP6|p.R1116Gfs*208|1|0.25|ENSG00000128159|chr22:50221013-50221013|T/-|frameshift_variant;nc|ENSG00000128159|Q96RT7-2|TUBGCP6;nc|ENSG00000128159|Q96RT7-3|TUBGCP6;ENSG00000128159|ENST00000248846|TUBGCP6	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.3829956054688	2	628.381383	1254.74821	0.62768	0.00039442	1.0072	0.00063289	1.6349	0.0010273	628.3824776047792	83.954	1.825	83.954	82.338	84.163	0					166	70	4	0	0	0	0.42762	1	21996	21996		7.609	0.31972	1	7918100			24511	11256	13999	14000	30673	30673					0.131028578932046
LPARRWGRRA	10	Unmodified	_LPARRWGRRA_					0	0	0			REV__nc|ENSG00000198689|Q92581-1|SLC9A6	REV__nc|ENSG00000198689|Q92581-1|SLC9A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.37353515625	2	619.870697	1237.72684	0.051888	3.2164E-05	-0.81845	-0.00050733	-0.76656	-0.00047517	619.8694063718847	93.874	0.35543	93.961	93.749	94.104	0.08667					38	27	2	0	0	0	0.41085	1	25014	25014		1.4819	0.8804	1	154910	+		24512	23162	14000	14001	30674	30674					0.11748653699351053
LPARRWGRRA	10	Unmodified	_LPARRWGRRA_					0	0	0			REV__nc|ENSG00000198689|Q92581-1|SLC9A6	REV__nc|ENSG00000198689|Q92581-1|SLC9A6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8690185546875	2	619.870697	1237.72684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.523	1	96.518	96.018	97.018	-0.0055466								0	0	0	0.38166	1	25814	25814		1.4819	0.15237	1		+		24513	23162	14000	14001	30675	30675					0.11748653699351053
LPASGRSAEV	10	Unmodified	_LPASGRSAEV_					0	0	0		nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP;nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7672119140625	2	493.766906	985.519259	0.27872	0.00013762	0.17316	8.5502E-05	0.45188	0.00022312	493.7669665740579	24.941	0.44117	24.885	24.661	25.102	-0.055931					37	15	4	0	0	0	0.29874	1	3927	3927		20.581	0.1664	1	120240			24514	8473;12955	14001	14002	30676	30676					0.025919819208070294
LPASIPHVI	9	Unmodified	_LPASIPHVI_					0	0	0		ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7897033691406	2	473.789653	945.564752	0.80664	0.00038218	-0.70724	-0.00033508	0.099401	4.7095E-05	473.789273453682	56.012	0.50189	56.012	55.628	56.13	0					30	17	2	0	0	0	0.0036555	1	13422	13422		97.075	46.22	1	773050			24515	2534	14002	14003	30677	30677					0.08979252173844543
LPASIPHVI	9	Unmodified	_LPASIPHVI_					0	0	0		ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7896728515625	2	473.789653	945.564752	0.66228	0.00031378	-0.44867	-0.00021257	0.21361	0.00010121	473.7893826344965	55.945	0.61882	56.016	55.675	56.294	0.070889					30	22	2	0	0	0	0.0061338	1	13378	13378		85.357	43.262	1	995000			24516	2534	14002	14003	30678	30678					0.08979252173844543
LPASIPHVI	9	Unmodified	_LPASIPHVI_					0	0	0		ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7897644042969	2	473.789653	945.564752	0.69555	0.00032954	-0.41767	-0.00019789	0.27787	0.00013165	473.7894796491647	56.05	0.59693	56.031	55.616	56.213	-0.019077					35	21	2	0	0	0	0.013258	1	13410	13410		74.423	40.32	1	614270			24517	2534	14002	14003	30679	30679					0.08979252173844543
LPASIWSI	8	Unmodified	_LPASIWSI_					0	0	0			REV__nc|nan|Q8WZ69|C11orf40	REV__nc|nan|Q8WZ69|C11orf40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.764404296875	2	443.755278	885.496004	0.27663	0.00012275	0.21303	9.4531E-05	0.48965	0.00021729	443.7552349726304	70.334	0.68955	70.334	70.049	70.739	0					58	24	3	0	0	0	0.41097	1	17865	17865		18.135	0	1	625750	+		24518	23271	14003	14004	30680	30680					0.048675878741505585
LPASIWSI	8	Unmodified	_LPASIWSI_					0	0	0			REV__nc|nan|Q8WZ69|C11orf40	REV__nc|nan|Q8WZ69|C11orf40	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	443.755278	885.496004	0.27663	0.00012275	0.21303	9.4531E-05	0.48965	0.00021729	443.7552349726304	70.334	0.68955	70.334	70.049	70.739	0	0.0046185	2.475E-05	NaN	18.135	58	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	625750	+		24519	23271	14003	14004							0.048675878741505585
LPASIWSI	8	Unmodified	_LPASIWSI_					0	0	0			REV__nc|nan|Q8WZ69|C11orf40	REV__nc|nan|Q8WZ69|C11orf40	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	443.755278	885.496004	0.17539	7.7828E-05	0.26288	0.00011665	0.43826	0.00019448	443.7552542003359	70.261	0.70186	70.327	70.075	70.777	0.066048	-0.0020346	6.8993E-05	NaN	18.135	56	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	676160	+		24520	23271	14003	14004							0.048675878741505585
LPASIWSI	8	Unmodified	_LPASIWSI_					0	0	0			REV__nc|nan|Q8WZ69|C11orf40	REV__nc|nan|Q8WZ69|C11orf40	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	443.755278	885.496004	0.31083	0.00013793	0.073667	3.269E-05	0.3845	0.00017062	443.7551738124048	70.351	0.72912	70.327	70.015	70.744	-0.024864	-0.0025839	-9.8932E-05	NaN	18.135	59	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	684300	+		24521	23271	14003	14004							0.048675878741505585
LPASKPGPIS	10	Unmodified	_LPASKPGPIS_					0	0	0		ENSG00000196700|ENST00000369888|ZNF512B;ZNF512B|p.K262Qfs*82|1|0.17|ENSG00000196700|chr20:63966391-63966392|-/G|frameshift_variant	ENSG00000196700|ENST00000369888|ZNF512B	ENSG00000196700|ENST00000369888|ZNF512B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.59808349609375	2	483.784567	965.554582	0.32973	0.00015952	-0.12584	-6.088E-05	0.20389	9.864E-05	483.7844106421961	45.998	1.1174	45.998	45.558	46.675	0					60	40	2	0	0	0	0.30555	1	10252	10252		7.1017	0	1	493800			24522	7896	14004	14005	30681	30681					0.07042644448631563
LPASLAPRR	9	Unmodified	_LPASLAPRR_					0	0	0		ENST00000438404.5_2_21:40816571-40817638:-|nuORF;ENST00000358268.6_2_21:40801131-40817638:-|nuORF	ENST00000438404.5_2_21:40816571-40817638:-|nuORF	ENST00000438404.5_2_21:40816571-40817638:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.8037414550781	2	490.803626	979.592698	0.18827	9.2402E-05	0.19544	9.5924E-05	0.38371	0.00018833	490.80363000446846	28.602	0.71695	28.602	28.207	28.924	0					59	24	3	0	0	0	0.22188	1	5047	5047		20.454	0	1	580330			24523	9647	14005	14006	30682	30682					0.10208575153944821
LPASLAPRR	9	Unmodified	_LPASLAPRR_					0	0	0		ENST00000438404.5_2_21:40816571-40817638:-|nuORF;ENST00000358268.6_2_21:40801131-40817638:-|nuORF	ENST00000438404.5_2_21:40816571-40817638:-|nuORF	ENST00000438404.5_2_21:40816571-40817638:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.80364990234375	2	490.803626	979.592698	0.07476	3.6693E-05	0.46862	0.00023	0.54338	0.00026669	490.8037655231645	28.606	1.0213	28.606	28.023	29.045	0.0004673					75	36	3	0	0	0	0.25989	1	5040	5040		14.838	0	1	508520			24524	9647	14005	14006	30683	30683					0.10208575153944821
LPASLISQI	9	Unmodified	_LPASLISQI_					0	0	0		ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2686462402344	2	471.286943	940.559333	0.10439	4.9199E-05	-0.17941	-8.4554E-05	-0.075019	-3.5356E-05	471.2868458085966	71.027	0.69391	71.027	70.768	71.462	0					46	24	3	0	0	0	0.012082	1	18031	18031		85.272	23.915	1	652640			24525	4812	14006	14007	30684	30684					0.0866752859137705
LPASLISQI	9	Unmodified	_LPASLISQI_					0	0	0		ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2687683105469	2	471.286943	940.559333	0.31694	0.00014937	-0.43887	-0.00020683	-0.12193	-5.7465E-05	471.28672837541893	71.03	0.62448	71.005	70.804	71.429	-0.024872					32	22	2	0	0	0	0.1659	1	18011	18011		36.044	9.1605	1	718110			24526	4812	14006	14007	30685	30685					0.0866752859137705
LPASLRRPQ	9	Unmodified	_LPASLRRPQ_					0	0	0		ENST00000505306.5_1_17:48167246-48167522:+|nuORF	ENST00000505306.5_1_17:48167246-48167522:+|nuORF	ENST00000505306.5_1_17:48167246-48167522:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2685546875	2	519.314358	1036.61416	-0.063502	-3.2978E-05	0.11123	5.7764E-05	0.047728	2.4786E-05	519.3143451690244	25.037	0.77803	25.006	24.737	25.515	-0.031408					44	26	2	0	0	0	0.25706	1	3935	3935		6.7232	6.7232	1	241680			24527	11313	14007	14008	30686	30686					0.09731960182648436
LPASLSIR	8	Unmodified	_LPASLSIR_					0	0	0			REV__ENST00000534646.5_1_11:102217957-102219379:+|nuORF	REV__ENST00000534646.5_1_11:102217957-102219379:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2685546875	2	428.766178	855.517802	-0.0020445	-8.7662E-07	-1.3899	-0.00059594	-1.3919	-0.00059682	428.76547103995046	38.388	0.35733	38.485	38.32	38.678	0.097527					19	12	2	0	0	0	0.32099	1	7960	7960		25.399	0	1	214970	+		24528	22056	14008	14009	30687	30687					0.08426392622698131
LPASPRARL	9	Unmodified	_LPASPRARL_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.8037414550781	2	490.803626	979.592698	0.18827	9.2402E-05	0.19544	9.5924E-05	0.38371	0.00018833	490.80363000446846	28.602	0.71695	28.602	28.207	28.924	0					59	24	3	0	0	0	0.23007	1	4948	4948		19.257	0	1	580330			24529	2759	14009	14010	30688	30688					0.10208575153933452
LPASPRARL	9	Unmodified	_LPASPRARL_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.8038024902344	2	490.803626	979.592698	0.18904	9.2781E-05	0.31035	0.00015232	0.49939	0.0002451	490.80369256496465	28.573	0.90253	28.569	28.055	28.957	-0.0042572					61	31	3	0	0	0	0.034444	1	5004	5004		58.679	10.333	1	543630			24530	2759	14009	14010	30689	30689					0.10208575153933452
LPASPRARL	9	Unmodified	_LPASPRARL_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.80377197265625	2	490.803626	979.592698	0.07476	3.6693E-05	0.46862	0.00023	0.54338	0.00026669	490.8037655231645	28.606	1.0213	28.606	28.023	29.045	0.0004673					75	36	3	0	0	0	0.088391	1	4991	4991		39.957	5.8549	1	508520			24531	2759	14009	14010	30690	30690					0.10208575153933452
LPASRALAT	9	Unmodified	_LPASRALAT_					0	0	0		ENSG00000120913|ENST00000409417|PDLIM2;nc|ENSG00000120913|Q96JY6-3|PDLIM2;nc|ENSG00000120913|Q96JY6-5|PDLIM2	ENSG00000120913|ENST00000409417|PDLIM2	ENSG00000120913|ENST00000409417|PDLIM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.26904296875	2	450.269084	898.523616	0.23357	0.00010517	-0.5303	-0.00023878	-0.29673	-0.00013361	450.26909924879277	30.121	1.7389	30.149	29.79	31.528	0.027946					178	61	5	0	0	0	0.21447	1	5696	5696		21.537	1.0834	1	19998000			24532	2974	14010	14011	30691	30691					0.07029491134380805
LPASRNRTV	9	Unmodified	_LPASRNRTV_					0	0	0		ENST00000563666.1_1_16:29810259-29810893:+|nuORF;nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22	ENST00000563666.1_1_16:29810259-29810893:+|nuORF	ENST00000563666.1_1_16:29810259-29810893:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.8195495605469	2	507.296165	1012.57778	0.53153	0.00026964	-0.46732	-0.00023707	0.064214	3.2576E-05	507.2959818281587	20.671	0.64538	20.618	20.387	21.033	-0.05291					37	22	2	0	0	0	0.25066	1	2582	2582		11.64	0.81637	1	117160			24533	1138	14011	14012	30692	30692					0.07199083285956931
LPATHLVI	8	Unmodified	_LPATHLVI_					0	0	0			REV__ENST00000228506.7_1_12:121136080-121136296:+|nuORF	REV__ENST00000228506.7_1_12:121136080-121136296:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.27105712890625	2	432.271096	862.527639	0.21713	9.3857E-05	-0.18817	-8.1338E-05	0.028961	1.2519E-05	432.2709162450782	55.121	0.4491	55.192	54.997	55.446	0.070885					26	16	2	0	0	0	0.25055	1	13149	13149		36.466	10.125	1	471320	+		24534	19449	14012	14013	30693	30693					0.09087580628079195
LPATHLVI	8	Unmodified	_LPATHLVI_					0	0	0			REV__ENST00000228506.7_1_12:121136080-121136296:+|nuORF	REV__ENST00000228506.7_1_12:121136080-121136296:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	432.271096	862.527639	0.067391	2.9131E-05	-0.393	-0.00016988	-0.32561	-0.00014075	432.270993445244	55.205	0.67041	55.205	54.837	55.507	0	0.03604	-0.00011892	NaN	36.466	36	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419540	+		24535	19449	14012	14013							0.09087580628079195
LPATHLVI	8	Unmodified	_LPATHLVI_					0	0	0			REV__ENST00000228506.7_1_12:121136080-121136296:+|nuORF	REV__ENST00000228506.7_1_12:121136080-121136296:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	432.271096	862.527639	0.21713	9.3857E-05	-0.18817	-8.1338E-05	0.028961	1.2519E-05	432.2709162450782	55.121	0.4491	55.192	54.997	55.446	0.070885	0.022451	5.8169E-05	NaN	36.466	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	471320	+		24536	19449	14012	14013							0.09087580628079195
LPATHLVI	8	Unmodified	_LPATHLVI_					0	0	0			REV__ENST00000228506.7_1_12:121136080-121136296:+|nuORF	REV__ENST00000228506.7_1_12:121136080-121136296:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	432.271096	862.527639	0.13705	5.9242E-05	-0.21905	-9.469E-05	-0.082005	-3.5448E-05	432.2709719320554	55.13	0.48688	55.111	54.947	55.434	-0.019077	-0.058491	3.1465E-05	NaN	36.466	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366800	+		24537	19449	14012	14013							0.09087580628079195
LPATPHSSSL	10	Unmodified	_LPATPHSSSL_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2701110839844	2	505.269281	1008.52401	0.32778	0.00016562	3.1014	0.001567	3.4291	0.0017326	505.2714115078545	81.6	0.96641	81.576	80.966	81.932	-0.02404					76	41	3	0	0	0	0.1715	1	21296	21296		36.127	3.8215	1	761520			24538	7353	14013	14014	30694	30694					0.02008866063579262
LPATPHSSSL	10	Unmodified	_LPATPHSSSL_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	505.269281	1008.52401	0.2939	0.0001485	1.1109	0.0005613	1.4048	0.0007098	505.2697778057744	81.58	0.54374	81.58	81.375	81.919	0	-0.013218	-0.00020135	NaN	36.127	54	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	663630			24539	7353	14013	14014							0.02008866063579262
LPATRGYAL	9	Unmodified	_LPATRGYAL_					0	0	0		ENST00000554982.5_1_14:24031495-24032684:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2	ENST00000554982.5_1_14:24031495-24032684:-|nuORF	ENST00000554982.5_1_14:24031495-24032684:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.3009338378906	2	481.276909	960.539266	0.11876	5.7159E-05	0.74476	0.00035844	0.86353	0.0004156	481.27712409243514	41.31	0.3765	41.4	41.162	41.539	0.090252					19	13	2	0	0	0	0.19686	1	8921	8921		24.991	9.1438	1	386840			24540	8370	14014	14015	30695	30695					0.05741777651417124
LPATRGYAL	9	Unmodified	_LPATRGYAL_					0	0	0		ENST00000554982.5_1_14:24031495-24032684:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2	ENST00000554982.5_1_14:24031495-24032684:-|nuORF	ENST00000554982.5_1_14:24031495-24032684:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2769470214844	2	481.276909	960.539266	0.23237	0.00011184	1.1468	0.00055195	1.3792	0.00066379	481.27753118947953	41.237	0.32907	41.334	41.148	41.477	0.096626					19	11	2	0	0	0	0.12279	1	8865	8865		34.932	8.6639	1	379340			24541	8370	14014	14015	30696	30696					0.05741777651417124
LPATSRRRLGL	11	Unmodified	_LPATSRRRLGL_					0	0	0		nc|ENSG00000241350|Q13670|PMS2P11	nc|ENSG00000241350|Q13670|PMS2P11	nc|ENSG00000241350|Q13670|PMS2P11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.5709533691406	3	413.926322	1238.75714	0.12319	5.0992E-05	-0.23097	-9.5603E-05	-0.10777	-4.4611E-05	413.92638739759866	33.176	0.49632	33.23	33.013	33.509	0.054371					27	17	2	0	0	0	0.33146	1	6467	6467		2.2527	0	1	100650			24542	12964	14015	14016	30697	30697					0.1473096757388248
LPAVLLHT	8	Unmodified	_LPAVLLHT_					0	0	0		ENST00000428443.7_1_2:179967411-179967483:-|nuORF	ENST00000428443.7_1_2:179967411-179967483:-|nuORF	ENST00000428443.7_1_2:179967411-179967483:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.8521423339844	2	432.271096	862.527639	-0.14983	-6.4766E-05	0.081886	3.5397E-05	-0.067942	-2.9369E-05	432.2710134742127	40.071	0.68922	40.071	39.644	40.334	0					51	24	3	0	0	0	0.31375	1	8472	8472		26.341	1.6674	1	257170			24543	10442	14016	14017	30698	30698					0.09087580628079195
LPAVQMPIRTL	11	Unmodified	_LPAVQMPIRTL_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8682250976562	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.39	1	113.39	112.89	113.89	0								0	0	0	0.37609	1	29452	29452		2.4985	1.0166	1				24544	742	14017	14018	30699	30699					0.11231169001894159
LPAVQMPIRTL	11	Unmodified	_LPAVQMPIRTL_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.86962890625	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.63	1	111.62	111.12	112.12	-0.013939								0	0	0	0.37609	1	29040	29040		2.4985	1.0166	1				24545	742	14017	14018	30700	30700					0.11231169001894159
LPAVQMPIRTL	11	Unmodified	_LPAVQMPIRTL_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8682250976562	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.93	1	112.94	112.44	113.44	0.014824								0	0	0	0.37609	1	29384	29384		2.4985	1.0166	1				24546	742	14017	14018	30701	30701					0.11231169001894159
LPAVRAQGLP	10	Unmodified	_LPAVRAQGLP_					0	0	0		nc|ENSG00000196313|Q96HA1-3|POM121	nc|ENSG00000196313|Q96HA1-3|POM121	nc|ENSG00000196313|Q96HA1-3|POM121	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2999572753906	2	511.311284	1020.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.369	1	59.355	58.855	59.855	-0.014267								0	0	0	0.34994	1	14445	14445		14.838	0.93222	1				24547	12895	14018	14019	30702	30702					0.09853441951145214
LPAVSAGRS	9	Unmodified	_LPAVSAGRS_					0	0	0		ENST00000489936.1_1_10:120896346-120896587:+|nuORF	ENST00000489936.1_1_10:120896346-120896587:+|nuORF	ENST00000489936.1_1_10:120896346-120896587:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.91876220703125	2	429.245609	856.476666	-0.207	-8.8852E-05	0.42118	0.00018079	0.21419	9.194E-05	429.2459408367087	27.353	0.43337	27.353	27.007	27.441	0					19	14	2	0	0	0	0.25706	1	4653	4653		3.5965	0	1	55091			24548	11156	14019	14020	30703	30703					0.042686315832384025
LPAYLVAAF	9	Unmodified	_LPAYLVAAF_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000538784.2_1_12:132635515-132636943:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.296630859375	2	482.778754	963.542954	0.62371	0.00030111	-3.9776	-0.0019203	-3.3539	-0.0016192	482.77661961074875	77.681	0.4141	77.736	77.51	77.924	0.05542					18	14	2	0	0	0	0.22431	1	20088	20088		9.3474	0	1	49830			24549	7487	14020	14021	30704	30704					0.059724474252675464
LPCARSHV	8	Unmodified	_LPCARSHV_					0	0	0		ENST00000367558.5_1_1:182572378-182573464:-|nuORF	ENST00000367558.5_1_1:182572378-182573464:-|nuORF	ENST00000367558.5_1_1:182572378-182573464:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.939697265625	2	441.734354	881.454156	0.06281	2.7745E-05	-0.28261	-0.00012484	-0.21981	-9.7096E-05	441.7347261522879	49.371	0.33405	49.403	49.24	49.574	0.032043					15	11	2	0	0	0	0.34319	1	11347	11347		2.5775	0.27475	1	79892			24550	9741	14021	14022	30705	30705					0.0086870891396984
LPCCMDIL	8	Unmodified	_LPCCMDIL_					0	0	0		ENST00000348367.8_1_10:113942591-113943479:-|nuORF;ENST00000480130.5_1_10:113942591-113974966:-|nuORF;ENST00000498541.1_1_10:113942591-113974138:-|nuORF	ENST00000348367.8_1_10:113942591-113943479:-|nuORF	ENST00000348367.8_1_10:113942591-113943479:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.7398376464844	2	454.207935	906.401317	0.32441	0.00014735	0.52381	0.00023792	0.84822	0.00038527	454.2079506664823	64.029	0.57114	64.121	63.9	64.471	0.09288					43	20	4	0	0	0	0.34147	1	15970	15970		11.114	11.114	1	280560			24551	9570	14022	14023	30706	30706					-0.05562753255355801
LPCCMDIL	8	Unmodified	_LPCCMDIL_					0	0	0		ENST00000348367.8_1_10:113942591-113943479:-|nuORF;ENST00000480130.5_1_10:113942591-113974966:-|nuORF;ENST00000498541.1_1_10:113942591-113974138:-|nuORF	ENST00000348367.8_1_10:113942591-113943479:-|nuORF	ENST00000348367.8_1_10:113942591-113943479:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.7397766113281	2	454.207935	906.401317	0.38817	0.00017631	0.28772	0.00013068	0.67589	0.00030699	454.2078859685731	64.136	0.53439	64.127	63.881	64.415	-0.0095367					35	19	2	0	0	0	0.34147	1	15936	15936		6.3541	3.4649	1	289650			24552	9570	14022	14023	30707	30707					-0.05562753255355801
LPCEGSLELSV	11	Unmodified	_LPCEGSLELSV_					0	0	0			REV__nc|ENSG00000196417|Q7L2R6-2|ZNF765	REV__nc|ENSG00000196417|Q7L2R6-2|ZNF765	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.7722778320312	2	573.789189	1145.56383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.007	1	20.954	20.454	21.454	-0.05291								0	0	0	0.37501	1	2709	2709		2.7352	0.23671	1		+		24553	23148	14023	14024	30708	30708					-0.003133750480174058
LPCFGAMLIL	10	Unmodified	_LPCFGAMLIL_					0	0	0			REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2954711914062	2	539.295399	1076.57624	0.56896	0.00030684	-0.49689	-0.00026797	0.072073	3.8868E-05	539.2948281007905	82.301	0.57005	82.301	82.081	82.651	0					41	20	3	0	0	0	0.31876	1	21540	21540		18.135	1.0484	1	464700	+		24554	16070	14024	14025	30709	30709					0.04101989881337431
LPCFTGTL	8	Unmodified	_LPCFTGTL_					0	0	0			REV__ENST00000369797.7_1_10:105205663-105205864:+|nuORF	REV__ENST00000369797.7_1_10:105205663-105205864:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2278747558594	2	426.220214	850.425876	0.027992	1.1931E-05	1.5508	0.00066099	1.5788	0.00067292	426.22086909162397	72.39	1.4434	72.39	71.69	73.133	0					66	52	2	0	0	0	0.29134	1	18415	18415		26.341	0	1	331010	+		24555	20363	14025	14026	30710	30710					-0.0053203378595299
LPCFTGTL	8	Unmodified	_LPCFTGTL_					0	0	0			REV__ENST00000369797.7_1_10:105205663-105205864:+|nuORF	REV__ENST00000369797.7_1_10:105205663-105205864:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	426.220214	850.425876	0.078852	3.3608E-05	1.76	0.00075016	1.8389	0.00078377	426.2209282314809	72.315	0.98267	72.371	72.057	73.04	0.056572	-0.0047251	2.2116E-05	NaN	26.341	52	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256550	+		24556	20363	14025	14026							-0.0053203378595299
LPCPVPTLPL	10	Unmodified	_LPCPVPTLPL_					0	0	0			REV__ENST00000593393.1_1_19:58917799-58918078:-|nuORF	REV__ENST00000593393.1_1_19:58917799-58918078:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3065795898438	2	525.306821	1048.59909	0.64565	0.00033917	-0.79535	-0.0004178	-0.1497	-7.8637E-05	525.3062554792866	90.61	0.62118	90.611	90.306	90.927	0.0003891					81	46	2	0	0	0	0.38233	1	24053	24053		6.7232	0.51738	1	335570	+		24557	22581	14026	14027	30711	30711					0.07673332270451283
LPCSLAIAK	9	Unmodified	_LPCSLAIAK_					0	0	0			REV__ENST00000395648.7_2_11:44955194-44955650:-|nuORF	REV__ENST00000395648.7_2_11:44955194-44955650:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.26080322265625	2	458.270238	914.525924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.189	1	25.189	24.689	25.689	0								0	0	0	0.23091	1	3977	3977		12.532	3.1841	1		+		24558	20639	14027	14028	30712	30712					0.06524203547814977
LPCSSSCCCCL	11	Unmodified	_LPCSSSCCCCL_					0	0	0		ENST00000485324.1_1_X:152959425-152959824:+|nuORF	ENST00000485324.1_1_X:152959425-152959824:+|nuORF	ENST00000485324.1_1_X:152959425-152959824:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.7826538085938	2	559.694009	1117.37346	0.17371	9.7222E-05	-1.4732	-0.00082452	-1.2995	-0.0007273	559.6930896997851	69.668	0.31689	69.646	69.515	69.832	-0.022087					16	11	2	0	0	0	0.33238	1	17661	17661		3.2813	0.97858	1	128130			24559	11088	14028	14029	30713	30713					-0.1805276756940657
LPCSSSCCCCL	11	Unmodified	_LPCSSSCCCCL_					0	0	0		ENST00000485324.1_1_X:152959425-152959824:+|nuORF	ENST00000485324.1_1_X:152959425-152959824:+|nuORF	ENST00000485324.1_1_X:152959425-152959824:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	559.694009	1117.37346	0.10591	5.9276E-05	-1.8152	-0.001016	-1.7093	-0.00095669	559.6927760339648	69.619	0.33407	69.619	69.369	69.703	0	-0.013193	-0.00013748	NaN	3.2813	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136980			24560	11088	14028	14029							-0.1805276756940657
LPCTTRLKSML	11	Unmodified	_LPCTTRLKSML_					0	0	0		nc|ENSG00000176225|Q86VV8-4|RTTN;nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN	nc|ENSG00000176225|Q86VV8-4|RTTN	nc|ENSG00000176225|Q86VV8-4|RTTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.5702209472656	3	421.570159	1261.68865	-0.18802	-7.9264E-05	1.1244	0.000474	0.93635	0.00039474	421.57038708024606	16.874	0.79429	16.76	16.532	17.326	-0.11434					86	28	4	0	0	0	0.4112	1	1509	1509		9.7643	0.22028	1	395200			24561	6911	14029	14030	30714	30714					0.06827218887519848
LPCTWKRL	8	Unmodified	_LPCTWKRL_					0	0	0		ENST00000602502.1_1_5:134735430-134735661:+|nuORF	ENST00000602502.1_1_5:134735430-134735661:+|nuORF	ENST00000602502.1_1_5:134735430-134735661:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3116149902344	2	508.78913	1015.56371	0.34171	0.00017386	-2.4427	-0.0012428	-2.101	-0.001069	508.7877852452636	63.078	0.24331	63.174	62.985	63.228	0.095722					11	8	2	0	0	0	0.32435	1	15583	15583		23.148	3.7094	1	313760			24562	12265	14030	14031	30715	30715					0.05654714533295646
LPDFDSSLS	9	Unmodified	_LPDFDSSLS_					0	0	0			REV__nc|ENSG00000108375|Q68DV7-3|RNF43	REV__nc|ENSG00000108375|Q68DV7-3|RNF43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.732666015625	2	490.732197	979.449842	0.4911	0.000241	0.71622	0.00035147	1.2073	0.00059247	490.7324475663501	66.394	0.8497	66.394	66.007	66.856	0					69	29	3	0	0	0	0.20344	1	16645	16645		23.148	0	1	516400	+		24563	14590	14031	14032	30716	30716					-0.04070521818596262
LPDGQVITI	9	Unmodified	_LPDGQVITI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2763671875	2	478.276575	954.538597	0.072493	3.4671E-05	-0.32369	-0.00015481	-0.2512	-0.00012014	478.2763633006084	64.915	1.0706	64.915	64.563	65.634	0					115	38	5	0	0	0	0.014888	2	16167	16125;16167		71.922	19.654	1	1481100			24564	1050;2147	14032	14033	30717;30718	30718					0.0595093821170849
LPDGQVITI	9	Unmodified	_LPDGQVITI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2762145996094	2	478.276575	954.538597	0.23087	0.00011042	-0.38035	-0.00018191	-0.14949	-7.1495E-05	478.2762810643499	64.786	1.0782	64.879	64.554	65.632	0.092888					111	39	4	0	0	0	0.023967	3	16087	16087;16136;16184		62.573	10.304	1	1476300			24565	1050;2147	14032	14033	30719;30720;30721	30719					0.0595093821170849
LPDGQVITI	9	Unmodified	_LPDGQVITI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2764587402344	2	478.276575	954.538597	0.11798	5.6428E-05	-0.21876	-0.00010463	-0.10078	-4.82E-05	478.2763498593631	64.891	1.0908	64.88	64.521	65.612	-0.011337					96	39	4	0	0	0	0.0083926	3	16158	16108;16158;16206		81.89	20.533	1	1514200			24566	1050;2147	14032	14033	30722;30723;30724	30723					0.0595093821170849
LPDGRIIKV	9	Unmodified	_LPDGRIIKV_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8213806152344	2	505.821484	1009.62842	0.11229	5.6799E-05	-0.19039	-9.6303E-05	-0.078098	-3.9504E-05	505.8213188823326	41.022	0.64492	41.022	40.768	41.413	0					63	23	4	0	0	0	0.0028542	2	8824	8774;8824		103.42	24.691	1	2141900			24567	4111	14033	14034	30725;30726	30726					0.12398612610945747
LPDGRIIKV	9	Unmodified	_LPDGRIIKV_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.82135009765625	2	505.821484	1009.62842	0.35393	0.00017903	-0.43963	-0.00022238	-0.085701	-4.3349E-05	505.8211888294174	40.875	0.7379	40.968	40.693	41.431	0.09267					70	27	4	0	0	0	0.0054984	2	8741	8741;8790		86.332	21.193	1	2731300			24568	4111	14033	14034	30727;30728	30727					0.12398612610945747
LPDGRIIKV	9	Unmodified	_LPDGRIIKV_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.8211669921875	2	505.821484	1009.62842	0.13966	7.0641E-05	-0.25161	-0.00012727	-0.11195	-5.6627E-05	505.8213162303814	40.791	0.73182	40.89	40.641	41.373	0.099407					61	26	3	0	0	0	0.0054984	2	8709	8709;8756		86.332	16.208	1	2246100			24569	4111	14033	14034	30729;30730	30729					0.12398612610945747
LPDGRTLIV	9	Unmodified	_LPDGRTLIV_					0	0	0		nc|ENSG00000140332|Q04726-7|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;nc|ENSG00000140332|Q04726|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;nc|ENSG00000140332|Q04726-2|TLE3;ENSG00000106829|ENST00000376552|TLE4;nc|ENSG00000106829|Q04727-3|TLE4;nc|ENSG00000106829|Q04727-4|TLE4;nc|ENSG00000106829|Q04727-2|TLE4;ENST00000462803.5_1_9:82286241-82340056:+|nuORF;ENST00000557815.1_1_15:70346775-70346994:-|nuORF	nc|ENSG00000140332|Q04726-7|TLE3	nc|ENSG00000140332|Q04726-7|TLE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2977600097656	2	492.297842	982.581131	0.3469	0.00017078	2.7824	0.0013698	3.1293	0.0015406	492.29759622623146	51.848	0.87486	51.848	51.508	52.382	0					108	31	5	0	0	0	0.026579	2	12133	12133;12180		61.602	7.7044	1	2753500			24570	4295	14034	14035	30731;30732	30731					0.08914333339942004
LPDGRTLIV	9	Unmodified	_LPDGRTLIV_					0	0	0		nc|ENSG00000140332|Q04726-7|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;nc|ENSG00000140332|Q04726|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;nc|ENSG00000140332|Q04726-2|TLE3;ENSG00000106829|ENST00000376552|TLE4;nc|ENSG00000106829|Q04727-3|TLE4;nc|ENSG00000106829|Q04727-4|TLE4;nc|ENSG00000106829|Q04727-2|TLE4;ENST00000462803.5_1_9:82286241-82340056:+|nuORF;ENST00000557815.1_1_15:70346775-70346994:-|nuORF	nc|ENSG00000140332|Q04726-7|TLE3	nc|ENSG00000140332|Q04726-7|TLE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2976989746094	2	492.297842	982.581131	0.39261	0.00019328	2.2376	0.0011016	2.6302	0.0012948	492.2975592666398	51.821	0.8308	51.869	51.53	52.361	0.048248					80	29	4	0	0	0	0.048637	2	12170	12170;12194		53.404	7.7044	1	3160400			24571	4295	14034	14035	30733;30734	30733					0.08914333339942004
LPDGRTLIV	9	Unmodified	_LPDGRTLIV_					0	0	0		nc|ENSG00000140332|Q04726-7|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;nc|ENSG00000140332|Q04726|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;nc|ENSG00000140332|Q04726-2|TLE3;ENSG00000106829|ENST00000376552|TLE4;nc|ENSG00000106829|Q04727-3|TLE4;nc|ENSG00000106829|Q04727-4|TLE4;nc|ENSG00000106829|Q04727-2|TLE4;ENST00000462803.5_1_9:82286241-82340056:+|nuORF;ENST00000557815.1_1_15:70346775-70346994:-|nuORF	nc|ENSG00000140332|Q04726-7|TLE3	nc|ENSG00000140332|Q04726-7|TLE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.29779052734375	2	492.297842	982.581131	0.17137	8.4367E-05	2.5679	0.0012642	2.7393	0.0013485	492.2976673093957	51.894	0.94491	51.893	51.55	52.495	-0.00080872					102	34	5	0	0	0	0.015924	3	12152	12152;12204;12221		70.332	14.155	1	3170100			24572	4295	14034	14035	30735;30736;30737	30735					0.08914333339942004
LPDHGNKI	8	Unmodified	_LPDHGNKI_					0	0	0		ENST00000396908.8_2_19:36259471-36259852:+|nuORF	ENST00000396908.8_2_19:36259471-36259852:+|nuORF	ENST00000396908.8_2_19:36259471-36259852:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.6666259765625	2	447.245609	892.476666	0.42662	0.00019081	-1.3176	-0.00058928	-0.89094	-0.00039847	447.24482401920665	29.531	0.36306	29.531	29.355	29.718	0					20	12	2	0	0	0	0.34092	1	5332	5332		8.5933	0	1	46033			24573	10125	14035	14036	30738	30738					0.026126315832470937
LPDIKVLTL	9	Unmodified	_LPDIKVLTL_					0	0	0		ENST00000472077.1_1_2:27604468-27607956:-|nuORF;ENSG00000115241|ENST00000344034|PPM1G	ENST00000472077.1_1_2:27604468-27607956:-|nuORF	ENST00000472077.1_1_2:27604468-27607956:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7951965332031	2	506.326068	1010.63758	0.3159	0.00015995	0.22784	0.00011536	0.54375	0.00027531	506.32598919095193	70.597	0.66555	70.657	70.379	71.044	0.060783					44	23	3	0	0	0	0.18022	1	17879	17879		37.075	7.2341	1	281090			24574	2623	14036	14037	30739	30739					0.13268961176606808
LPDKYKYIQTL	11	Unmodified	_LPDKYKYIQTL_					0	0	0		ENSG00000008311|ENST00000417368|AASS;ENST00000473553.5_1_7:121738626-121741683:-|nuORF	ENSG00000008311|ENST00000417368|AASS	ENSG00000008311|ENST00000417368|AASS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.26226806640625	3	461.262377	1380.7653	0.2848	0.00013137	-0.021216	-9.7861E-06	0.26358	0.00012158	461.2623385981676	53.768	0.58456	53.758	53.507	54.092	-0.0096054					56	21	3	0	0	0	0.46392	1	12752	12752		2.8433	0	1	981050			24575	394	14037	14038	30740	30740					0.09015056979978908
LPDKYKYIQTL	11	Unmodified	_LPDKYKYIQTL_					0	0	0		ENSG00000008311|ENST00000417368|AASS;ENST00000473553.5_1_7:121738626-121741683:-|nuORF	ENSG00000008311|ENST00000417368|AASS	ENSG00000008311|ENST00000417368|AASS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	461.262377	1380.7653	0.19996	9.2235E-05	-0.21593	-9.9602E-05	-0.015972	-7.3671E-06	461.26217379788505	53.521	0.68529	53.521	53.228	53.914	0	-0.08248	-0.00032911	NaN	2.8433	53	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1146500			24576	394	14037	14038							0.09015056979978908
LPDKYKYIQTL	11	Unmodified	_LPDKYKYIQTL_					0	0	0		ENSG00000008311|ENST00000417368|AASS;ENST00000473553.5_1_7:121738626-121741683:-|nuORF	ENSG00000008311|ENST00000417368|AASS	ENSG00000008311|ENST00000417368|AASS	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	461.262377	1380.7653	0.2848	0.00013137	-0.021216	-9.7861E-06	0.26358	0.00012158	461.2623385981676	53.768	0.58456	53.758	53.507	54.092	-0.0096054	0.15476	-5.9666E-05	NaN	2.8433	56	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	981050			24577	394	14037	14038							0.09015056979978908
LPDLQRSKQAL	11	Unmodified	_LPDLQRSKQAL_					0	0	0		ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENSG00000104164|ENST00000220531|BLOC1S6	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.5822448730469	3	423.582221	1267.72483	0.35686	0.00015116	-0.42212	-0.0001788	-0.065256	-2.7641E-05	423.5820062693428	37.412	1.176	37.412	36.644	37.82	0					112	41	4	0	0	0	0.26738	2	7720	7673;7720		25.155	9.6165	1	2436100			24578	1870	14038	14039	30741;30742	30742					0.10168135380240528
LPDLQRSKQAL	11	Unmodified	_LPDLQRSKQAL_					0	0	0		ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENSG00000104164|ENST00000220531|BLOC1S6	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.5821533203125	3	423.582221	1267.72483	-0.006614	-2.8016E-06	-0.13136	-5.564E-05	-0.13797	-5.8441E-05	423.582132386378	37.312	1.1981	37.4	36.595	37.793	0.08741					125	43	4	0	0	0	0.12256	3	7693	7644;7693;7741		38.161	19.821	1	2257800			24579	1870	14038	14039	30743;30744;30745	30744					0.10168135380240528
LPDLQRSKQAL	11	Unmodified	_LPDLQRSKQAL_					0	0	0		ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENSG00000104164|ENST00000220531|BLOC1S6	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.8695068359375	2	634.869694	1267.72483	0.53074	0.00033695	-0.18152	-0.00011524	0.34921	0.00022171	634.869510331251	37.308	0.65765	37.396	37.006	37.664	0.08741					53	23	3	0	0	0	0.0061056	1	7677	7677		98.634	58.395	1	412090			24580	1870	14038	14039	30746	30746					0.10168135380240528
LPDLQRSKQAL	11	Unmodified	_LPDLQRSKQAL_					0	0	0		ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENSG00000104164|ENST00000220531|BLOC1S6	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.5821838378906	3	423.582221	1267.72483	0.12543	5.3131E-05	-0.23107	-9.7877E-05	-0.10564	-4.4746E-05	423.5820758426226	37.279	1.1613	37.372	36.602	37.763	0.093014					127	42	4	0	0	0	0.17299	2	7667	7612;7667		33.632	16.584	1	2073800			24581	1870	14038	14039	30747;30748	30748					0.10168135380240528
LPDLQRSKQAL	11	Unmodified	_LPDLQRSKQAL_					0	0	0		ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENSG00000104164|ENST00000220531|BLOC1S6	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.8699951171875	2	634.869694	1267.72483	0.65059	0.00041304	-0.21156	-0.00013431	0.43903	0.00027873	634.8694487074358	37.282	0.5896	37.375	37.01	37.599	0.093018					40	21	3	0	0	0	0.0061056	1	7639	7639		98.634	58.395	1	501790			24582	1870	14038	14039	30749	30749					0.10168135380240528
LPDLQRSKQAL	11	Unmodified	_LPDLQRSKQAL_					0	0	0		ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENSG00000104164|ENST00000220531|BLOC1S6	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	634.869694	1267.72483	0.75526	0.00047949	-0.52864	-0.00033562	0.22661	0.00014387	634.8693345169447	37.421	0.69545	37.421	37.039	37.735	0	0.023476	-0.0002783	NaN	98.634	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	531130			24583	1870	14038	14039							0.10168135380240528
LPDLVKLLT	9	Unmodified	_LPDLVKLLT_					0	0	0		ENSG00000183775|ENST00000512467|KCTD16	ENSG00000183775|ENST00000512467|KCTD16	ENSG00000183775|ENST00000512467|KCTD16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.794921875	2	506.326068	1010.63758	0.38036	0.00019259	0.059424	3.0088E-05	0.43979	0.00022267	506.3260113563521	70.653	0.56556	70.629	70.378	70.943	-0.024864					32	19	2	0	0	0	0.19888	1	17892	17892		32.037	2.6003	1	306460			24584	7404	14039	14040	30750	30750					0.13268961176606808
LPDLWLPLL	9	Unmodified	_LPDLWLPLL_					0	0	0		ENST00000323703.10_1_2:27601338-27601512:-|nuORF	ENST00000323703.10_1_2:27601338-27601512:-|nuORF	ENST00000323703.10_1_2:27601338-27601512:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7899169921875	2	540.328611	1078.64267	0.76673	0.00041429	2.2113	0.0011948	2.9781	0.0016091	540.329508427414	74.828	0.46722	74.828	74.63	75.097	0					35	16	3	0	0	0	0.25291	1	19209	19209		5.2307	2.9279	1	190770			24585	9397	14040	14041	30751	30751					0.1064926503922834
LPDLWLPLL	9	Unmodified	_LPDLWLPLL_					0	0	0		ENST00000323703.10_1_2:27601338-27601512:-|nuORF	ENST00000323703.10_1_2:27601338-27601512:-|nuORF	ENST00000323703.10_1_2:27601338-27601512:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8146362304688	2	540.328611	1078.64267	0.53432	0.00028871	2.7608	0.0014917	3.2951	0.0017804	540.329641219127	87.596	0.26131	87.683	87.553	87.814	0.087097					17	13	2	0	0	0	0.24542	1	23135	23135		14.582	2.0501	1	92963			24586	9397	14040	14041	30752	30752					0.1064926503922834
LPDPTRPPHP	10	Unmodified	_LPDPTRPPHP_					0	0	0			REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.3223266601562	2	563.803823	1125.59309	0.25575	0.00014419	1.8818	0.001061	2.1375	0.0012051	563.8040916462376	27.039	0.46698	27.027	26.772	27.239	-0.011562					24	16	2	0	0	0	0.31323	1	4566	4566		15.248	4.4246	1	78067	+		24587	23106	14041	14042	30753	30753					0.03531950083151969
LPDPVLRLKG	10	Unmodified	_LPDPVLRLKG_					0	0	0		ENSG00000161996|ENST00000293879|WDR90;ENST00000552943.5_1_16:699416-703842:+|nuORF;nc|ENSG00000161996|Q96KV7-3|WDR90;ENST00000420061.6_1_16:699416-706047:+|nuORF;nc|ENSG00000161996|Q96KV7-5|WDR90;ENST00000549648.5_1_16:699416-706047:+|nuORF	ENSG00000161996|ENST00000293879|WDR90	ENSG00000161996|ENST00000293879|WDR90	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.2536010742188	2	554.347866	1106.68118	0.50764	0.00028141	-0.10172	-5.6387E-05	0.40593	0.00022502	554.3477093666617	44.592	0.65717	44.661	44.349	45.006	0.068569					53	23	3	0	0	0	0.31515	1	9938	9938		12.241	0	1	753240			24588	5540	14042	14043	30754	30754					0.13210570673732036
LPDPWQGQA	9	Unmodified	_LPDPWQGQA_					0	0	0		ENST00000593203.1_1_19:10934344-10943016:+|nuORF	ENST00000593203.1_1_19:10934344-10943016:+|nuORF	ENST00000593203.1_1_19:10934344-10943016:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.79278564453125	2	506.248349	1010.48214	-0.025598	-1.2959E-05	2.364	0.0011968	2.3384	0.0011838	506.249523355202	24.915	0.15655	24.884	24.765	24.922	-0.031408					6	4	2	0	0	0	0.25526	1	3868	3868		7.9102	2.1497	1	22583			24589	12208	14043	14044	30755	30755					-0.022676896249549827
LPDQPREEKP	10	Unmodified	_LPDQPREEKP_					0	0	0			REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1	REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.5650329589844	3	403.547177	1207.6197	-1.336	-0.00053915	-0.24694	-9.9653E-05	-1.583	-0.0006388	403.54761526414563	34.695	0.30334	34.695	34.472	34.775	0					16	10	3	0	0	0	0.31701	1	6877	6877		7.4771	4.7419	1	103270	+		24590	16132	14044	14045	30756	30756					0.024195941837888313
LPDTFCSYE	9	Unmodified	_LPDTFCSYE_					0	0	0			REV__ENST00000359860.7_1_10:46261257-46264937:+|nuORF	REV__ENST00000359860.7_1_10:46261257-46264937:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2955322265625	2	537.726058	1073.43756	0.50303	0.00027049	1.6024	0.00086165	2.1054	0.0011321	537.7268969515635	80.466	0.35442	80.439	80.173	80.527	-0.026825					17	11	2	0	0	0	0.25879	1	20847	20847		4.756	0.42677	1	125970	+		24591	20245	14045	14046	30757	30757					-0.09621881553334788
LPDTFCSYE	9	Unmodified	_LPDTFCSYE_					0	0	0			REV__ENST00000359860.7_1_10:46261257-46264937:+|nuORF	REV__ENST00000359860.7_1_10:46261257-46264937:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	537.726058	1073.43756	0.46135	0.00024808	1.4457	0.00077741	1.9071	0.0010255	537.7266108351289	80.423	0.34122	80.423	80.124	80.466	0	-0.0053034	-8.2725E-05	NaN	4.756	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111620	+		24592	20245	14045	14046							-0.09621881553334788
LPDTFCSYE	9	Unmodified	_LPDTFCSYE_					0	0	0			REV__ENST00000359860.7_1_10:46261257-46264937:+|nuORF	REV__ENST00000359860.7_1_10:46261257-46264937:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	537.726058	1073.43756	0.31049	0.00016696	1.2124	0.00065192	1.5229	0.00081888	537.7269589498056	80.358	0.30778	80.423	80.185	80.493	0.065094	-0.0050786	-0.00033371	NaN	4.756	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82023	+		24593	20245	14045	14046							-0.09621881553334788
LPDTPQEPF	9	Unmodified	_LPDTPQEPF_					0	0	0		COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1;nc|ENSG00000187955|Q05707-3|COL14A1	COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant	COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8004760742188	2	522.25584	1042.49713	0.24127	0.00012601	-1.7419	-0.00090969	-1.5006	-0.00078369	522.2547432785601	59.652	0.33568	59.652	59.508	59.844	0					18	11	2	0	0	0	0.24311	1	14498	14498		16.942	3.4344	1	290460			24594	195	14046	14047	30758	30758					-0.022422425476179342
LPDTPQEPF	9	Unmodified	_LPDTPQEPF_					0	0	0		COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1;nc|ENSG00000187955|Q05707-3|COL14A1	COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant	COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.25584	1042.49713	0.49679	0.00025945	-2.3852	-0.0012457	-1.8884	-0.00098625	522.2543238001882	59.684	0.24493	59.672	59.543	59.787	-0.011486	0.0099763	-0.00037691	NaN	16.942	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280580			24595	195	14046	14047							-0.022422425476179342
LPDVHFGFL	9	Unmodified	_LPDVHFGFL_					0	0	0			REV__nc|ENSG00000102100|P78381-5|SLC35A2	REV__nc|ENSG00000102100|P78381-5|SLC35A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8152465820312	2	522.779285	1043.54402	0.11773	6.1549E-05	-0.54414	-0.00028446	-0.4264	-0.00022292	522.7794124503697	35.477	0.55213	35.553	35.152	35.704	0.076233					28	19	2	0	0	0	0.25066	1	7053	7053		11.64	0	1	233720	+		24596	14305	14047	14048	30759	30759					0.023986617941773147
LPDVKIVK	8	Unmodified	_LPDVKIVK_					0	0	0		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2854309082031	2	456.299853	910.585153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.89	1	28.886	28.386	29.386	-0.0042572								0	0	0	0.35843	1	5101	5101		10.824	0	1				24597	4752	14048	14049	30760	30760					0.1262842283365444
LPDVPRIFL	9	Unmodified	_LPDVPRIFL_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498209.6_1_11:2937879-2942743:+|nuORF;ENST00000467719.5_1_11:2937762-2940985:+|nuORF	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.8399047851562	2	535.32386	1068.63317	0.81692	0.00043732	0.076193	4.0788E-05	0.89312	0.00047811	535.3235392862491	74.849	0.46887	74.849	74.6	75.069	0					24	16	2	0	0	0	0.16283	2	19178	19178;19224		29.082	6.3453	1	305520			24598	2318	14049	14050	30761;30762	30761					0.10159496753703934
LPDVPRIFL	9	Unmodified	_LPDVPRIFL_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498209.6_1_11:2937879-2942743:+|nuORF;ENST00000467719.5_1_11:2937762-2940985:+|nuORF	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8399047851562	2	535.32386	1068.63317	0.33079	0.00017708	0.14044	7.5182E-05	0.47123	0.00025226	535.3234953509199	74.727	0.54673	74.779	74.585	75.131	0.052361					25	19	2	0	0	0	0.11201	1	19171	19171		36.506	7.4246	1	354700			24599	2318	14049	14050	30763	30763					0.10159496753703934
LPDVPRIFL	9	Unmodified	_LPDVPRIFL_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498209.6_1_11:2937879-2942743:+|nuORF;ENST00000467719.5_1_11:2937762-2940985:+|nuORF	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8402099609375	2	535.32386	1068.63317	0.75369	0.00040347	0.0080671	4.3185E-06	0.76176	0.00040779	535.3235198597049	74.853	0.48695	74.822	74.672	75.159	-0.031487					25	17	2	0	0	0	0.16283	2	19177	19177;19226		29.082	6.3453	1	435480			24600	2318	14049	14050	30764;30765	30764					0.10159496753703934
LPEDDERPP	9	Unmodified	_LPEDDERPP_					0	0	0		ENSG00000138606|ENST00000690270|SHF;ENST00000561091.1_1_15:45466604-45470396:-|nuORF;nc|ENSG00000138606|Q7M4L6-2|SHF;nc|ENSG00000138606|Q7M4L6|SHF	ENSG00000138606|ENST00000690270|SHF	ENSG00000138606|ENST00000690270|SHF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.8128662109375	2	534.253828	1066.4931	0.62013	0.00033131	-1.5561	-0.00083136	-0.93598	-0.00050005	534.2544597204276	92.476	1.1577	92.477	91.901	93.058	0.00046539					134	82	3	0	0	0	0.25066	1	24660	24660		11.64	0	1	137050			24601	4163	14050	14051	30766	30766					-0.0374833204132301
LPEDIHSTF	9	Unmodified	_LPEDIHSTF_					0	0	0		nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1;ENST00000523387.5_1_8:2986336-3141840:-|nuORF;ENST00000523488.5_1_8:3008913-3253839:-|nuORF;nc|ENSG00000183117|Q96PZ7-4|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3547973632812	2	529.761289	1057.50803	0.71183	0.0003771	-0.060728	-3.2171E-05	0.6511	0.00034493	529.76238377511	77.452	0.85107	77.508	77.15	78.001	0.055412					47	30	2	0	0	0	0.24311	1	20048	20048		16.942	2.3606	1	189560			24602	7348	14051	14052	30767	30767					-0.018428401733444844
LPEDKPRLI	9	Unmodified	_LPEDKPRLI_					0	0	0		nc|ENSG00000151576|Q9H974-2|QTRT2;nc|ENSG00000151576|Q9H974-3|QTRT2;ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2;ENST00000462869.1_1_3:113795697-113801401:+|nuORF	nc|ENSG00000151576|Q9H974-2|QTRT2	nc|ENSG00000151576|Q9H974-2|QTRT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.824951171875	2	540.824224	1079.63389	0.60811	0.00032888	1.4153	0.00076545	2.0234	0.0010943	540.8248097276331	36.575	0.76621	36.575	36.358	37.124	0					64	26	3	0	0	0	0.0041491	2	7484	7433;7484		93.166	54.99	1	989330			24603	4969	14052	14053	30768;30769	30769					0.09726291402762399
LPEDKPRLI	9	Unmodified	_LPEDKPRLI_					0	0	0		nc|ENSG00000151576|Q9H974-2|QTRT2;nc|ENSG00000151576|Q9H974-3|QTRT2;ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2;ENST00000462869.1_1_3:113795697-113801401:+|nuORF	nc|ENSG00000151576|Q9H974-2|QTRT2	nc|ENSG00000151576|Q9H974-2|QTRT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8258666992188	2	540.824224	1079.63389	0.62099	0.00033585	1.1562	0.00062531	1.7772	0.00096115	540.8246531136303	36.479	0.74876	36.562	36.308	37.057	0.082359					66	26	3	0	0	0	0.0073901	2	7394	7394;7446		83.429	52.16	1	1130900			24604	4969	14052	14053	30770;30771	30770					0.09726291402762399
LPEDKPRLI	9	Unmodified	_LPEDKPRLI_					0	0	0		nc|ENSG00000151576|Q9H974-2|QTRT2;nc|ENSG00000151576|Q9H974-3|QTRT2;ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2;ENST00000462869.1_1_3:113795697-113801401:+|nuORF	nc|ENSG00000151576|Q9H974-2|QTRT2	nc|ENSG00000151576|Q9H974-2|QTRT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.825439453125	2	540.824224	1079.63389	0.98235	0.00053128	0.90989	0.00049209	1.8922	0.0010234	540.8245451903299	36.475	0.78149	36.561	36.272	37.053	0.08625					67	27	3	0	0	0	0.0041491	3	7376	7376;7427;7487		93.166	54.99	1	1037400			24605	4969	14052	14053	30772;30773;30774	30772					0.09726291402762399
LPEDLRFLARS	11	Unmodified	_LPEDLRFLARS_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14;LRRC14|p.E374Vfs*15|1|0.37|ENSG00000160959|chr8:144521115-144521118|TGAG/-|frameshift_variant	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.1614074707031	3	439.582221	1315.72483	0.011072	4.8671E-06	0.12197	5.3615E-05	0.13304	5.8482E-05	439.5821627145343	17.835	0.51379	17.835	17.537	18.051	0					22	15	2	0	0	0	0.33094	1	1677	1677		7.4771	0	1	34706			24606	5501	14053	14054	30775	30775					0.07960135380244537
LPEEEYTK	8	Unmodified	_LPEEEYTK_					0	0	0		ENSG00000188997|ENST00000340067|KCTD21	ENSG00000188997|ENST00000340067|KCTD21	ENSG00000188997|ENST00000340067|KCTD21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.8078308105469	2	504.747847	1007.48114	0.15669	7.9088E-05	-3.5476	-0.0017906	-3.3909	-0.0017116	504.7459873692054	26.252	0.30128	26.213	26.069	26.37	-0.03867					16	10	2	0	0	0	0.34167	1	4295	4295		11.64	1.5664	1	53805			24607	7793	14054	14055	30776	30776					-0.02229948784508906
LPEEQLIPL	9	Unmodified	_LPEEQLIPL_					0	0	0			REV__GIGYF2|p.I1041Lfs*9|1|0.12|ENSG00000204120|chr2:232844390-232844390|A/-|frameshift_variant	REV__GIGYF2|p.I1041Lfs*9|1|0.12|ENSG00000204120|chr2:232844390-232844390|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.290283203125	2	526.305332	1050.59611	0.70163	0.00036927	-0.70768	-0.00037245	-0.0060475	-3.1829E-06	526.3051013348276	54.325	1.2263	54.389	53.93	55.157	0.063202					120	45	4	0	0	0	0.28128	1	12816	12816		11.64	0.81637	1	5137800	+		24608	18917	14055	14056	30777	30777					0.07283780417287744
LPEERSCLAE	10	Unmodified	_LPEERSCLAE_					0	0	0		ENSG00000128710|ENST00000249501|HOXD10	ENSG00000128710|ENST00000249501|HOXD10	ENSG00000128710|ENST00000249501|HOXD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.3040771484375	2	573.776613	1145.53867	0.39307	0.00022554	1.0006	0.00057411	1.3937	0.00079965	573.7772175229076	74.339	0.40935	74.339	74.127	74.537	0					17	13	2	0	0	0	0.31889	1	18993	18993		6.2058	1.4498	1	394380			24609	3389	14056	14057	30778	30778					-0.028274298505948536
LPEFHPSD	8	Unmodified	_LPEFHPSD_					0	0	0		ENSG00000189108|ENST00000372582|IL1RAPL2	ENSG00000189108|ENST00000372582|IL1RAPL2	ENSG00000189108|ENST00000372582|IL1RAPL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.76605224609375	2	471.2218	940.429047	0.16739	7.888E-05	-3.5941	-0.0016936	-3.4268	-0.0016148	471.22064115948683	67.231	1.8224	67.309	66.128	67.951	0.078041					79	64	2	0	0	0	0.34046	1	16980	16980		14.582	5.2343	1	200080			24610	7802	14057	14058	30779	30779					-0.043550674076186624
LPEFVSEL	8	Unmodified	_LPEFVSEL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|207|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|207|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7658996582031	2	467.250026	932.485499	0.057259	2.6754E-05	0.37474	0.0001751	0.432	0.00020185	467.2500075090294	82.076	0.39189	82.076	81.87	82.262	0					25	13	3	0	0	0	0.35375	1	21394	21394		24.674	2.9272	1	245800	+		24611	22710	14058	14059	30780	30780					0.01655560429048819
LPEFVSEL	8	Unmodified	_LPEFVSEL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|207|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|207|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7648010253906	2	467.250026	932.485499	0.057259	2.6754E-05	0.37474	0.0001751	0.432	0.00020185	467.2500075090294	82.076	0.39189	82.076	81.87	82.262	0					25	13	3	0	0	0	0.33245	1	21441	21441		19.439	9.2556	1	245800	+		24612	22710	14058	14059	30781	30781					0.01655560429048819
LPEFVSEL	8	Unmodified	_LPEFVSEL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|207|3|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|207|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.765869140625	2	467.250026	932.485499	-0.086807	-4.0561E-05	0.36166	0.00016899	0.27485	0.00012842	467.2500078862699	81.938	0.46214	82.007	81.797	82.259	0.068993					32	19	2	0	0	0	0.39956	1	21397	21397		19.439	3.6708	1	217490	+		24613	22710	14058	14059	30782	30782					0.01655560429048819
LPEFYNLL	8	Unmodified	_LPEFYNLL_					0	0	0			REV__nc|ENSG00000130234|Q9BYF1-3|ACE2	REV__nc|ENSG00000130234|Q9BYF1-3|ACE2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7921447753906	2	504.773668	1007.53278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.75	1	85.834	85.334	86.334	0.084251								0	0	0	0.30483	1	22531	22531		28.173	0	1		+		24614	15444	14059	14060	30783	30783					0.029318397000452023
LPEGAFREV	9	Unmodified	_LPEGAFREV_					0	0	0		ENSG00000129009|ENST00000249842|ISLR	ENSG00000129009|ENST00000249842|ISLR	ENSG00000129009|ENST00000249842|ISLR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8038024902344	2	509.271824	1016.5291	0.26518	0.00013505	-0.037041	-1.8864E-05	0.22814	0.00011619	509.272598618365	44.09	0.60283	44.174	44.049	44.652	0.083996					38	21	3	0	0	0	0.18733	1	9746	9746		29.437	10.18	1	307580			24615	3406	14060	14061	30784	30784					0.021491699262014663
LPEGAFREV	9	Unmodified	_LPEGAFREV_					0	0	0		ENSG00000129009|ENST00000249842|ISLR	ENSG00000129009|ENST00000249842|ISLR	ENSG00000129009|ENST00000249842|ISLR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	509.271824	1016.5291	0.40285	0.00020516	-0.63205	-0.00032189	-0.22921	-0.00011673	509.27217161199593	44.171	0.4208	44.247	44.127	44.547	0.076351	-0.037866	-0.00030037	NaN	29.437	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269770			24616	3406	14060	14061							0.021491699262014663
LPEGQELEKN	10	Unmodified	_LPEGQELEKN_					0	0	0			REV__nc|ENSG00000101311|Q9BQL6-4|FERMT1	REV__nc|ENSG00000101311|Q9BQL6-4|FERMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.7962646484375	2	578.79586	1155.57717	0.13032	7.5427E-05	0.20322	0.00011762	0.33353	0.00019305	578.796160158038	28.957	0.51964	28.97	28.728	29.248	0.013474					40	18	4	0	0	0	0.30958	1	5144	5144		19.257	4.0085	1	325670	+		24617	14261	14061	14062	30785	30785					0.005601990555760494
LPEHKPPIT	9	Unmodified	_LPEHKPPIT_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7614135742188	2	516.297842	1030.58113	0.34908	0.00018023	0.49758	0.0002569	0.84666	0.00043713	516.2982575988285	62.14	0.71949	62.14	61.86	62.58	0					36	26	2	0	0	0	0.22596	1	15331	15331		10.824	0	1	241200	+		24618	18742	14062	14063	30786	30786					0.06706333339934645
LPEHKPPIT	9	Unmodified	_LPEHKPPIT_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7612915039062	2	516.297842	1030.58113	0.087433	4.5141E-05	-0.28708	-0.00014822	-0.19965	-0.00010308	516.29848645886	62.062	0.64941	62.159	61.896	62.546	0.096985					39	23	3	0	0	0	0.22596	1	15208	15208		10.824	0	1	283390	+		24619	18742	14062	14063	30787	30787					0.06706333339934645
LPEKALRPIS	10	Unmodified	_LPEKALRPIS_					0	0	0			REV__nc|ENSG00000168453|O43593-2|HR	REV__nc|ENSG00000168453|O43593-2|HR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3621826171875	2	562.345323	1122.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.042	1	98.104	97.604	98.604	0.061516								0	0	0	0.36711	1	26237	26237		7.609	0.88579	1		+		24620	17461	14063	14064	30788	30788					0.11966266811123205
LPEKAQYKLLL	11	Unmodified	_LPEKAQYKLLL_					0	0	0			REV__ENSG00000165509|ENST00000298296|MAGEC3	REV__ENSG00000165509|ENST00000298296|MAGEC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.5738525390625	3	439.270984	1314.79112	0.36167	0.00015887	1.0142	0.0004455	1.3759	0.00060438	439.2713222278672	32.471	0.48787	32.471	32.145	32.633	0					34	17	3	0	0	0	0.33277	1	6216	6216		3.0723	0	1	104460	+		24621	17241	14064	14065	30789	30789					0.14631951222281714
LPEKGLDPC	9	Unmodified	_LPEKGLDPC_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8000793457031	2	486.24696	970.479368	0.37736	0.00018349	-4.4664	-0.0021718	-4.0891	-0.0019883	486.24619465246803	53.361	0.30982	53.361	53.259	53.568	0					16	11	2	0	0	0	0.25066	1	12566	12566		7.2892	0	1	132310	+		24622	15623	14065	14066	30790	30790					-0.0070528107411291785
LPEKKNLV	8	Unmodified	_LPEKKNLV_					0	0	0		nc|ENSG00000185621|Q96KR4-2|LMLN;nc|ENSG00000185621|Q96KR4|LMLN;ENSG00000185621|ENST00000420910|LMLN;ENST00000451139.6_1_3:197687092-197702992:+|nuORF	nc|ENSG00000185621|Q96KR4-2|LMLN	nc|ENSG00000185621|Q96KR4-2|LMLN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2687683105469	2	470.794935	939.575317	0.3424	0.0001612	-0.37412	-0.00017613	-0.031724	-1.4935E-05	470.79476971792366	55.402	0.51095	55.473	55.216	55.727	0.070885					23	18	2	0	0	0	0.31375	1	13203	13203		26.341	0	1	405160			24623	7543	14066	14067	30791	30791					0.10311234828282068
LPEKNKVL	8	Unmodified	_LPEKNKVL_					0	0	0			REV__ENST00000480958.1_1_17:41902775-41908980:-|nuORF	REV__ENST00000480958.1_1_17:41902775-41908980:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2690124511719	2	470.794935	939.575317	-0.028396	-1.3369E-05	0.1086	5.1126E-05	0.080199	3.7757E-05	470.79500042901765	55.382	0.45353	55.382	55.174	55.628	0					24	16	2	0	0	0	0.34092	1	13173	13173		13.508	0	1	303550	+		24624	21482	14067	14068	30792	30792					0.10311234828293436
LPELAGLLEQM	11	Unmodified	_LPELAGLLEQM_					0	0	0			REV__PRR12|p.N831Mfs*8|1|0.28|ENSG00000126464|chr19:49614937-49614937|A/-|frameshift_variant	REV__PRR12|p.N831Mfs*8|1|0.28|ENSG00000126464|chr19:49614937-49614937|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.3291625976562	2	607.328482	1212.64241	0.68051	0.0004133	0.7558	0.00045902	1.4363	0.00087232	607.3288987117362	44.675	0.58266	44.675	44.408	44.991	0					49	20	3	0	0	0	0.45108	1	9934	9934		4.5289	0.19963	1	616250	+		24625	15311	14068	14069	30793	30793					0.04459477257069011
LPELLTVSI	9	Unmodified	_LPELLTVSI_					0	0	0			REV__nc|ENSG00000160058|Q9NW68-2|BSDC1	REV__nc|ENSG00000160058|Q9NW68-2|BSDC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.78961181640625	2	492.802426	983.590298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.63	1	63.63	63.13	64.13	0								0	0	0	0.21726	1	15771	15771		16.942	4.4107	1		+		24626	23050	14069	14070	30794	30794					0.09784681905625803
LPELQVPLR	9	Unmodified	_LPELQVPLR_					0	0	0		ENST00000377751.9_1_5:150501807-150518944:-|nuORF	ENST00000377751.9_1_5:150501807-150518944:-|nuORF	ENST00000377751.9_1_5:150501807-150518944:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2822265625	2	532.826766	1063.63898	0.38227	0.00020368	0.057737	3.0764E-05	0.44001	0.00023445	532.8268328808883	57.484	0.29754	57.569	57.491	57.788	0.085621					19	10	2	0	0	0	0.25066	1	13906	13906		11.64	1.5664	1	380820			24627	9943	14070	14071	30795	30795					0.1097059526537123
LPENKHRR	8	Unmodified	_LPENKHRR_					0	0	0			REV__ENSG00000150394|ENST00000577390|CDH8	REV__ENSG00000150394|ENST00000577390|CDH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.303466796875	2	525.301781	1048.58901	0.67696	0.00035561	1.6445	0.00086387	2.3215	0.0012195	525.3028802333416	40.544	0.90986	40.544	39.886	40.796	0					60	32	2	0	0	0	0.2564	1	8660	8660		39.957	0	1	577410	+		24628	16495	14071	14072	30796	30796					0.06665905380077675
LPEPGHSH	8	Unmodified	_LPEPGHSH_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2151184082031	2	437.214309	872.414065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.39	1	112.37	111.87	112.87	-0.015625								0	0	0	0.37664	1	29233	29233		2.5775	0	1				24629	2871	14072	14073	30797	30797					-0.027245144849530334
LPEPLFTFN	9	Unmodified	_LPEPLFTFN_					0	0	0		nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;ENST00000493008.1_1_10:32096588-32098081:-|nuORF;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2842407226562	2	539.2844	1076.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.36	1	101.39	100.89	101.89	0.027206								0	0	0	0.24311	1	27036	27036		8.5933	0.68312	1				24630	12814	14073	14074	30798	30798					0.019032247287668724
LPEPSIRSV	9	Unmodified	_LPEPSIRSV_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENSG00000100077|ENST00000324198|GRK3	ENSG00000173020|ENST00000308595|GRK2;ENSG00000100077|ENST00000324198|GRK3	ENSG00000173020|ENST00000308595|GRK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.28759765625	2	499.287474	996.560395	0.59323	0.00029619	-0.38649	-0.00019297	0.20674	0.00010322	499.2872148417714	44.623	0.95073	44.623	44.065	45.015	0					47	34	2	0	0	0	0.18479	1	9935	9935		28.495	3.5035	1	513770			24631	6687;1528	14074	14075	30799	30799					0.06197742960296182
LPEPSIRSV	9	Unmodified	_LPEPSIRSV_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENSG00000100077|ENST00000324198|GRK3	ENSG00000173020|ENST00000308595|GRK2;ENSG00000100077|ENST00000324198|GRK3	ENSG00000173020|ENST00000308595|GRK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3113098144531	2	499.287474	996.560395	0.54241	0.00027082	-0.47527	-0.0002373	0.067135	3.352E-05	499.28723895313385	44.479	0.83258	44.548	44.147	44.979	0.068573					68	30	3	0	0	0	0.2524	1	9969	9969		11.495	1.4208	1	628730			24632	6687;1528	14074	14075	30800	30800					0.06197742960296182
LPEPSIRSV	9	Unmodified	_LPEPSIRSV_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENSG00000100077|ENST00000324198|GRK3	ENSG00000173020|ENST00000308595|GRK2;ENSG00000100077|ENST00000324198|GRK3	ENSG00000173020|ENST00000308595|GRK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2873840332031	2	499.287474	996.560395	0.43448	0.00021693	-0.24446	-0.00012206	0.19002	9.4873E-05	499.2873727837402	44.461	0.86894	44.536	44.067	44.935	0.07505					60	31	3	0	0	0	0.1645	1	9813	9813		33.445	3.6043	1	607550			24633	6687;1528	14074	14075	30801	30801					0.06197742960296182
LPEQEIKTL	9	Unmodified	_LPEQEIKTL_					0	0	0		ENSG00000099901|ENST00000430524|RANBP1;ENST00000488484.1_1_22:20105172-20110015:+|nuORF;nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1	ENSG00000099901|ENST00000430524|RANBP1	ENSG00000099901|ENST00000430524|RANBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2901611328125	2	535.808239	1069.60193	0.36239	0.00019417	1.2726	0.00068187	1.635	0.00087605	535.8083758043505	58.976	0.69593	59.068	58.764	59.46	0.091305					35	24	3	0	0	0	0.25066	1	14401	14401		7.2892	1.0834	1	129570			24634	1502	14075	14076	30802	30802					0.06990878928968414
LPERFVPQP	9	Unmodified	_LPERFVPQP_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7741088867188	2	541.803291	1081.59203	0.66373	0.00035961	-3.6414	-0.0019729	-2.9776	-0.0016133	541.8008143956374	86.178	0.33371	86.178	86.072	86.406	0					17	12	2	0	0	0	0.24913	1	22660	22660		12.532	4.6214	1	64270	+		24635	16663	14076	14077	30803	30803					0.05449735714250892
LPERQKLL	8	Unmodified	_LPERQKLL_					0	0	0		ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7720031738281	2	498.813659	995.612765	0.33945	0.00016932	0.12622	6.2959E-05	0.46566	0.00023228	498.8135974119883	52.065	0.76016	52.065	51.648	52.408	0					63	27	3	0	0	0	0.30241	1	12216	12216		32.305	3.2239	1	391140			24636	5835	14077	14078	30804	30804					0.11478326093913438
LPERQQRE	8	Unmodified	_LPERQQRE_					0	0	0			REV__ENST00000303004.4_1_20:48807959-48808286:+|nuORF	REV__ENST00000303004.4_1_20:48807959-48808286:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2832641601562	2	528.283254	1054.55196	0.41722	0.00022041	0.10201	5.3893E-05	0.51923	0.0002743	528.2832690772142	16.244	1.1331	16.182	15.943	17.077	-0.062532					66	39	4	0	0	0	0.46022	1	1508	1508		2.3027	0	1	423470	+		24637	19835	14078	14079	30805	30805					0.02686189043674858
LPESHLGPAP	10	Unmodified	_LPESHLGPAP_					0	0	0			REV__ENSG00000105556|ENST00000264819|MIER2	REV__ENSG00000105556|ENST00000264819|MIER2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3083801269531	2	509.271824	1016.5291	0.48563	0.00024732	-0.31024	-0.000158	0.1754	8.9324E-05	509.2720847046661	44.434	0.4409	44.434	44.33	44.771	0					21	15	2	0	0	0	0.30586	1	9925	9925		19.257	5.7491	1	317690	+		24638	14463	14079	14080	30806	30806					0.021491699262014663
LPESSGMEI	9	Unmodified	_LPESSGMEI_					0	0	0			REV__ENST00000486716.5_2_1:47040607-47059818:-|nuORF	REV__ENST00000486716.5_2_1:47040607-47059818:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.2787780761719	2	481.7286	961.442648	0.29448	0.00014186	0.2387	0.00011499	0.53318	0.00025685	481.728629679844	48.837	0.24735	48.837	48.636	48.883	0					11	8	2	0	0	0	0.24311	1	11155	11155		11.64	0	1	341980	+		24639	21555	14080	14081	30807	30807					-0.039615776906771316
LPEWAALLF	9	Unmodified	_LPEWAALLF_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2793579101562	2	530.29731	1058.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.351	1	86.435	85.935	86.935	0.084251								0	0	0	0.22457	1	22715	22715		14.582	2.0501	1		+		24640	13754	14081	14082	30808	30808					0.053121189710282124
LPEWPLPRP	9	Unmodified	_LPEWPLPRP_					0	0	0			REV__ENST00000252804.8_1_2:1637315-1637576:-|nuORF	REV__ENST00000252804.8_1_2:1637315-1637576:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7718505859375	2	552.813659	1103.61277	0.76237	0.00042145	-0.14668	-8.1087E-05	0.61569	0.00034036	552.8135859879252	50.693	0.73687	50.693	50.461	51.198	0					42	26	2	0	0	0	0.2451	1	11853	11853		15.847	1.0089	1	177990	+		24641	19533	14082	14083	30809	30809					0.06510326093916774
LPEWPLPRP	9	Unmodified	_LPEWPLPRP_					0	0	0			REV__ENST00000252804.8_1_2:1637315-1637576:-|nuORF	REV__ENST00000252804.8_1_2:1637315-1637576:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7720336914062	2	552.813659	1103.61277	0.73342	0.00040544	0.071089	3.9299E-05	0.8045	0.00044474	552.8137938326857	50.718	0.6941	50.764	50.55	51.244	0.045563					39	25	2	0	0	0	0.24913	1	11836	11836		4.3292	0.73274	1	319380	+		24642	19533	14082	14083	30810	30810					0.06510326093916774
LPFAAAQI	8	Unmodified	_LPFAAAQI_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.7420654296875	2	415.742171	829.469789	-0.16795	-6.9823E-05	0.23253	9.6672E-05	0.064583	2.685E-05	415.74215288356436	65.344	1.3824	65.344	64.884	66.266	0					142	49	4	0	0	0	0.028313	3	16253	16253;16302;16346		90.836	31.041	1	3481000			24643	2058	14083	14084	30811;30812;30813	30811					0.04823318702653978
LPFAAAQI	8	Unmodified	_LPFAAAQI_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.7421569824219	2	415.742171	829.469789	-0.14728	-6.123E-05	0.24192	0.00010058	0.094639	3.9345E-05	415.74214624916954	65.234	1.7811	65.322	64.416	66.197	0.088882					137	65	4	0	0	0	0.040061	3	16249	16208;16249;16293		82.939	30.246	1	3289500			24644	2058	14083	14084	30814;30815;30816	30815					0.04823318702653978
LPFAAAQI	8	Unmodified	_LPFAAAQI_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.7420654296875	2	415.742171	829.469789	0.047643	1.9807E-05	-0.070054	-2.9124E-05	-0.022411	-9.3172E-06	415.7420555207376	65.325	1.1734	65.314	64.996	66.169	-0.011337					93	42	3	0	0	0	0.028313	3	16287	16243;16287;16337		90.836	31.041	1	3574200			24645	2058	14083	14084	30817;30818;30819	30818					0.04823318702653978
LPFAHVAI	8	Unmodified	_LPFAHVAI_					0	0	0		ENST00000415995.5_1_3:48636563-48647036:-|nuORF;ENSG00000010256|ENST00000203407|UQCRC1	ENST00000415995.5_1_3:48636563-48647036:-|nuORF	ENST00000415995.5_1_3:48636563-48647036:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.25811767578125	2	434.257988	866.501424	0.013184	5.7254E-06	0.086039	3.7363E-05	0.099223	4.3088E-05	434.2578283269417	57.656	0.61794	57.742	57.544	58.162	0.085617					50	22	3	0	0	0	0.052153	1	13925	13925		77.196	24.862	1	542420			24646	418	14084	14085	30820	30820					0.06283311456604679
LPFAHVAI	8	Unmodified	_LPFAHVAI_					0	0	0		ENST00000415995.5_1_3:48636563-48647036:-|nuORF;ENSG00000010256|ENST00000203407|UQCRC1	ENST00000415995.5_1_3:48636563-48647036:-|nuORF	ENST00000415995.5_1_3:48636563-48647036:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.2579650878906	2	434.257988	866.501424	-0.11251	-4.886E-05	0.35659	0.00015485	0.24407	0.00010599	434.2580386039435	57.882	0.58334	57.865	57.555	58.138	-0.017197					43	21	3	0	0	0	0.052153	1	14014	14014		77.196	24.862	1	434050			24647	418	14084	14085	30821	30821					0.06283311456604679
LPFAHVAI	8	Unmodified	_LPFAHVAI_					0	0	0		ENST00000415995.5_1_3:48636563-48647036:-|nuORF;ENSG00000010256|ENST00000203407|UQCRC1	ENST00000415995.5_1_3:48636563-48647036:-|nuORF	ENST00000415995.5_1_3:48636563-48647036:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	434.257988	866.501424	-0.1216	-5.2807E-05	0.24915	0.0001082	0.12755	5.5389E-05	434.2579657688288	57.838	0.58231	57.838	57.605	58.187	0	0.023281	1.5896E-05	NaN	77.196	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	486100			24648	418	14084	14085							0.06283311456604679
LPFALMGLL	9	Unmodified	_LPFALMGLL_					0	0	0			REV__SLC15A4|p.G462Wfs*65|1|0.36|ENSG00000139370|chr12:128800884-128800885|-/A|frameshift_variant	REV__SLC15A4|p.G462Wfs*65|1|0.36|ENSG00000139370|chr12:128800884-128800885|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7910461425781	2	487.790807	973.56706	0.29402	0.00014342	0.19273	9.4014E-05	0.48676	0.00023744	487.790789876972	74.046	2.9193	74.046	73.191	76.11	0					194	103	2	0	0	0	0.21902	1	19585	19585		20.871	3.7847	1	5545500	+		24649	15982	14085	14086	30822	30822					0.07921964587308139
LPFAVWALI	9	Unmodified	_LPFAVWALI_					0	0	0			REV__ENST00000395936.5_2_17:15134236-15138539:-|nuORF	REV__ENST00000395936.5_2_17:15134236-15138539:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7322998046875	2	515.310221	1028.60589	0.23645	0.00012184	-0.11977	-6.1718E-05	0.11668	6.0126E-05	515.3100463268337	72.711	0.79609	72.765	72.539	73.335	0.053841					30	28	2	0	0	0	0.22431	1	18548	18548		20.871	5.024	1	76641	+		24650	14628	14086	14087	30823	30823					0.0927301321332834
LPFCALRTL	9	Unmodified	_LPFCALRTL_					0	0	0		ENST00000448715.2_1_19:35225785-35230060:+|nuORF	ENST00000448715.2_1_19:35225785-35230060:+|nuORF	ENST00000448715.2_1_19:35225785-35230060:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.8079223632812	2	517.296788	1032.57902	0.52984	0.00027408	2.5147	0.0013008	3.0445	0.0015749	517.2987478367728	55.127	0.20831	55.108	55.052	55.261	-0.019081					9	7	2	0	0	0	0.25526	1	13137	13137		4.3292	0	1	217650			24651	10622	14087	14088	30824	30824					0.06403581330505403
LPFDHSRVI	9	Unmodified	_LPFDHSRVI_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;nc|ENSG00000111679|P29350-2|PTPN6;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.802490234375	2	542.300916	1082.58728	0.66546	0.00036088	-0.88814	-0.00048164	-0.22268	-0.00012076	542.3001118299121	44.499	0.95873	44.499	44.28	45.238	0					76	34	3	0	0	0	0.00019464	1	9868	9868		133.05	54.324	1	2730000			24652	10317	14088	14089	30825	30825					0.049288515714806636
LPFDHSRVI	9	Unmodified	_LPFDHSRVI_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;nc|ENSG00000111679|P29350-2|PTPN6;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3005981445312	2	542.300916	1082.58728	0.63288	0.00034321	-1.1357	-0.00061589	-0.50281	-0.00027268	542.3001179884408	44.331	1.1434	44.406	44.04	45.183	0.07505					92	41	4	0	0	0	0.0045319	1	9860	9860		90.135	30.061	1	2689000			24653	10317	14088	14089	30826	30826					0.049288515714806636
LPFDHSRVI	9	Unmodified	_LPFDHSRVI_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;nc|ENSG00000111679|P29350-2|PTPN6;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	542.300916	1082.58728	0.69614	0.00037752	-1.0868	-0.00058938	-0.39066	-0.00021186	542.3001011673392	44.351	0.91551	44.42	44.147	45.062	0.068569	-0.021862	-6.6279E-05	NaN	133.05	78	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2907900			24654	10317	14088	14089							0.049288515714806636
LPFDRFSEV	9	Unmodified	_LPFDRFSEV_					0	0	0		ENSG00000070367|ENST00000621441|EXOC5;ENST00000510543.1_1_4:63682918-63683389:+|nuORF	ENSG00000070367|ENST00000621441|EXOC5	ENSG00000070367|ENST00000621441|EXOC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2846069335938	2	555.284931	1108.55531	-0.048528	-2.6947E-05	-0.28963	-0.00016083	-0.33816	-0.00018777	555.2846913962068	60.135	1.4399	60.135	59.38	60.819	0					134	51	4	0	0	0	0.0045319	2	14690	14644;14690		90.135	23.678	1	7269800			24655	922	14089	14090	30827;30828	30828					0.0053743909768400044
LPFDRFSEV	9	Unmodified	_LPFDRFSEV_					0	0	0		ENSG00000070367|ENST00000621441|EXOC5;ENST00000510543.1_1_4:63682918-63683389:+|nuORF	ENSG00000070367|ENST00000621441|EXOC5	ENSG00000070367|ENST00000621441|EXOC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.28466796875	2	555.284931	1108.55531	-0.28156	-0.00015634	-0.0020925	-1.1619E-06	-0.28365	-0.00015751	555.2848603114068	59.963	1.5689	60.058	59.325	60.894	0.095093					141	56	4	0	0	0	0.003673	2	14657	14614;14657		96.936	18.786	1	6610200			24656	922	14089	14090	30829;30830	30830					0.0053743909768400044
LPFDRFSEV	9	Unmodified	_LPFDRFSEV_					0	0	0		ENSG00000070367|ENST00000621441|EXOC5;ENST00000510543.1_1_4:63682918-63683389:+|nuORF	ENSG00000070367|ENST00000621441|EXOC5	ENSG00000070367|ENST00000621441|EXOC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.28466796875	2	555.284931	1108.55531	0.10908	6.0571E-05	-0.30599	-0.00016991	-0.19691	-0.00010934	555.2846983064165	60.096	1.5433	60.084	59.372	60.916	-0.011486					136	55	4	0	0	0	0.003673	2	14657	14657;14710		96.936	15.505	1	6674400			24657	922	14089	14090	30831;30832	30831					0.0053743909768400044
LPFDRVVTI	9	Unmodified	_LPFDRVVTI_					0	0	0		ENSG00000073150|ENST00000395842|PANX2;nc|ENSG00000073150|Q96RD6-1|PANX2	ENSG00000073150|ENST00000395842|PANX2	ENSG00000073150|ENST00000395842|PANX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3137817382812	2	530.313492	1058.61243	0.25779	0.00013671	-0.062471	-3.3129E-05	0.19532	0.00010358	530.3137617917846	65.214	1.2423	65.214	64.91	66.152	0					125	44	5	0	0	0	0.027957	1	16256	16256		61.09	22.914	1	4005800			24658	999	14090	14091	30833	30833					0.08546906374067476
LPFDRVVTI	9	Unmodified	_LPFDRVVTI_					0	0	0		ENSG00000073150|ENST00000395842|PANX2;nc|ENSG00000073150|Q96RD6-1|PANX2	ENSG00000073150|ENST00000395842|PANX2	ENSG00000073150|ENST00000395842|PANX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.313720703125	2	530.313492	1058.61243	0.069886	3.7062E-05	0.13803	7.3198E-05	0.20791	0.00011026	530.3138211310718	65.094	1.4004	65.183	64.905	66.305	0.088882					139	51	5	0	0	0	0.016571	1	16211	16211		69.338	23.639	1	3979300			24659	999	14090	14091	30834	30834					0.08546906374067476
LPFDRVVTI	9	Unmodified	_LPFDRVVTI_					0	0	0		ENSG00000073150|ENST00000395842|PANX2;nc|ENSG00000073150|Q96RD6-1|PANX2	ENSG00000073150|ENST00000395842|PANX2	ENSG00000073150|ENST00000395842|PANX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3138427734375	2	530.313492	1058.61243	0.21859	0.00011592	-0.0042581	-2.2581E-06	0.21434	0.00011367	530.3137892089613	65.24	1.2207	65.229	64.922	66.143	-0.011337					125	44	5	0	0	0	0.010888	1	16249	16249		78.06	32.361	1	4186500			24660	999	14090	14091	30835	30835					0.08546906374067476
LPFDVFQI	8	Unmodified	_LPFDVFQI_					0	0	0		ENSG00000186452|ENST00000398458|TMPRSS12	ENSG00000186452|ENST00000398458|TMPRSS12	ENSG00000186452|ENST00000398458|TMPRSS12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7684631347656	2	489.768386	977.522219	0.17263	8.455E-05	-0.68032	-0.0003332	-0.50769	-0.00024865	489.76907666282966	75.972	1.8327	75.972	75.449	77.282	0					165	66	4	0	0	0	0.22	1	19628	19628		39.957	13.074	1	952270			24661	7617	14091	14092	30836	30836					0.03255857045621724
LPFDVKRKDF	10	Unmodified	_LPFDVKRKDF_					0	0	0		ENST00000558501.5_1_19:8275630-8321979:+|nuORF;ENST00000557925.1_1_19:8321089-8326990:+|nuORF;ENSG00000090661|ENST00000251363|CERS4	ENST00000558501.5_1_19:8275630-8321979:+|nuORF	ENST00000558501.5_1_19:8275630-8321979:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.24053955078125	3	422.239796	1263.69756	-0.19738	-8.3341E-05	1.2542	0.00052958	1.0568	0.00044624	422.24057583278716	26.085	1.0496	26.046	25.721	26.771	-0.038671					114	36	4	0	0	0	0.33753	2	4238	4238;4288		14.957	2.7824	1	1149700			24662	1385	14092	14093	30837;30838	30837					0.0762565183983952
LPFDVKRKDF	10	Unmodified	_LPFDVKRKDF_					0	0	0		ENST00000558501.5_1_19:8275630-8321979:+|nuORF;ENST00000557925.1_1_19:8321089-8326990:+|nuORF;ENSG00000090661|ENST00000251363|CERS4	ENST00000558501.5_1_19:8275630-8321979:+|nuORF	ENST00000558501.5_1_19:8275630-8321979:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.240478515625	3	422.239796	1263.69756	0.027979	1.1814E-05	1.0015	0.00042288	1.0295	0.00043469	422.24049907255613	26.19	1.0261	26.167	25.867	26.893	-0.022236					110	36	4	0	0	0	0.35267	1	4240	4240		12.175	1.2758	1	948970			24663	1385	14092	14093	30839	30839					0.0762565183983952
LPFELHPTSS	10	Unmodified	_LPFELHPTSS_					0	0	0			REV__nc|ENSG00000165816|Q5GFL6-2|VWA2	REV__nc|ENSG00000165816|Q5GFL6-2|VWA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.8221435546875	2	564.290214	1126.56587	0.22429	0.00012657	0.96657	0.00054543	1.1909	0.00067199	564.2903186774191	80.288	2.4186	80.353	79.622	82.041	0.065102					197	103	2	0	0	0	0.31165	1	20986	20986		10.824	5.0921	1	495200	+		24664	17270	14093	14094	30840	30840					0.007654217520894235
LPFEPVPVI	9	Unmodified	_LPFEPVPVI_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8000183105469	2	505.799686	1009.58482	0.55606	0.00028126	-0.36723	-0.00018575	0.18883	9.5509E-05	505.79960924121895	84.49	1.8792	84.49	84.109	85.989	0					192	71	5	0	0	0	0.088391	5	22174	22079;22174;22224;22275;22327		39.957	11.47	1	12866000			24665	3726	14094	14095	30841;30842;30843;30844;30845	30842					0.080410031138058
LPFEPVPVI	9	Unmodified	_LPFEPVPVI_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7997741699219	2	505.799686	1009.58482	0.52669	0.0002664	-0.38386	-0.00019415	0.14283	7.2246E-05	505.7996056069444	84.406	1.7833	84.483	84.097	85.881	0.077095					196	69	5	0	0	0	0.037693	6	22088	22045;22088;22134;22181;22233;22301		57.471	25.166	1	12101000			24666	3726	14094	14095	30846;30847;30848;30849;30850;30851	30847					0.080410031138058
LPFEPVPVI	9	Unmodified	_LPFEPVPVI_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.7997131347656	2	505.799686	1009.58482	0.52229	0.00026417	-0.35516	-0.00017964	0.16713	8.4534E-05	505.79959955629	84.446	1.7426	84.433	84.076	85.818	-0.01284					197	68	5	0	0	0	0.062246	6	22109	22062;22109;22156;22200;22247;22299		48.346	10.617	1	14812000			24667	3726	14094	14095	30852;30853;30854;30855;30856;30857	30853					0.080410031138058
LPFEVLQHI	9	Unmodified	_LPFEVLQHI_					0	0	0		ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3139038085938	2	548.313492	1094.61243	0.44224	0.00024249	0.5565	0.00030513	0.99873	0.00054762	548.3138969882126	70.439	1.0832	70.439	70.074	71.157	0					124	38	5	0	0	0	2.942E-07	2	17847	17847;18028		168.66	63.859	1	10964000			24668	2828	14095	14096	30858;30859	30858					0.0689090637404206
LPFEVLQHI	9	Unmodified	_LPFEVLQHI_					0	0	0		ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3137817382812	2	548.313492	1094.61243	0.53616	0.00029399	0.54849	0.00030074	1.0846	0.00059473	548.3138637003021	70.417	1.0831	70.478	70.127	71.21	0.060783					128	38	5	0	0	0	2.942E-07	3	17821	17821;17865;18013		168.66	63.859	1	12890000			24669	2828	14095	14096	30860;30861;30862	30860					0.0689090637404206
LPFEVLQHI	9	Unmodified	_LPFEVLQHI_					0	0	0		ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	ENSG00000118496|ENST00000237281|FBXO30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3139038085938	2	548.313492	1094.61243	0.54805	0.0003005	0.49387	0.0002708	1.0419	0.0005713	548.3138376329566	70.504	1.1073	70.479	70.106	71.214	-0.024864					119	39	5	0	0	0	6.1879E-11	4	17852	17804;17852;17897;18032		183.04	78.24	1	11962000			24670	2828	14095	14096	30863;30864;30865;30866	30864					0.0689090637404206
LPFFILNCI	9	Unmodified	_LPFFILNCI_					0	0	0		ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3162231445312	2	540.301539	1078.58852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.04	1	75.04	74.54	75.54	0								0	0	0	0.22789	1	19260	19260		13.508	0.97634	1				24671	7476	14096	14097	30867	30867					0.052373496160271316
LPFFLPFFLA	10	Unmodified	_LPFFLPFFLA_					0	0	0			REV__ENST00000492816.6_1_2:216257645-216258011:-|nuORF	REV__ENST00000492816.6_1_2:216257645-216258011:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3469848632812	2	606.346803	1210.67905	0.6076	0.00036842	-0.793	-0.00048083	-0.1854	-0.00011242	606.3463487200987	29.845	0.50785	29.845	29.58	30.088	0					24	17	2	0	0	0	0.40888	1	5429	5429		1.8442	0.19162	1	124620	+		24672	21628	14097	14098	30868	30868					0.08214141935945918
LPFFLPFFLA	10	Unmodified	_LPFFLPFFLA_					0	0	0			REV__ENST00000492816.6_1_2:216257645-216258011:-|nuORF	REV__ENST00000492816.6_1_2:216257645-216258011:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	606.346803	1210.67905	0.6076	0.00036842	-0.793	-0.00048083	-0.1854	-0.00011242	606.3463487200987	29.845	0.50785	29.845	29.58	30.088	0	0.0098405	-7.9453E-05	NaN	1.8442	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124620	+		24673	21628	14097	14098							0.08214141935945918
LPFFLPFFLA	10	Unmodified	_LPFFLPFFLA_					0	0	0			REV__ENST00000492816.6_1_2:216257645-216258011:-|nuORF	REV__ENST00000492816.6_1_2:216257645-216258011:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	606.346803	1210.67905	0.54163	0.00032842	-0.74352	-0.00045083	-0.20189	-0.00012241	606.3463162520733	29.742	0.5627	29.754	29.469	30.032	0.012266	-0.081154	-1.9449E-05	NaN	1.8442	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119030	+		24674	21628	14097	14098							0.08214141935945918
LPFFLPFFLA	10	Unmodified	_LPFFLPFFLA_					0	0	0			REV__ENST00000492816.6_1_2:216257645-216258011:-|nuORF	REV__ENST00000492816.6_1_2:216257645-216258011:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	606.346803	1210.67905	0.076767	4.6548E-05	-0.63652	-0.00038595	-0.55976	-0.00033941	606.3465539394547	29.893	0.3849	29.907	29.653	30.038	0.013474	0.071313	0.00011031	NaN	1.8442	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62628	+		24675	21628	14097	14098							0.08214141935945918
LPFGAVVSAK	10	Unmodified	_LPFGAVVSAK_					0	0	0		nc|ENSG00000140488|Q96J87-4|CELF6;nc|ENSG00000140488|Q96J87-2|CELF6;nc|ENSG00000140488|Q96J87-3|CELF6;ENSG00000140488|ENST00000287202|CELF6	nc|ENSG00000140488|Q96J87-4|CELF6	nc|ENSG00000140488|Q96J87-4|CELF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7681579589844	2	494.794935	987.575317	0.65654	0.00032485	-1.4486	-0.00071678	-0.7921	-0.00039193	494.7941851297173	54.351	0.74587	54.414	54.088	54.834	0.063202					42	27	2	0	0	0	0.2266	1	12847	12847		41.84	3.8656	1	723080			24676	4310	14098	14099	30869	30869					0.08103234828274708
LPFGKIPIL	9	Unmodified	_LPFGKIPIL_					0	0	0		ENST00000514774.1_1_4:95225018-95255708:-|nuORF;ENSG00000163106|ENST00000295256|HPGDS	ENST00000514774.1_1_4:95225018-95255708:-|nuORF	ENST00000514774.1_1_4:95225018-95255708:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.32598876953125	2	499.325871	996.637189	0.43899	0.0002192	0.051618	2.5774E-05	0.49061	0.00024497	499.325791737761	74.225	0.75899	74.225	73.944	74.703	0					51	25	3	0	0	0	0.015402	1	19027	19027		71.134	37.031	1	2137700			24677	5648	14099	14100	30870	30870					0.1387358624741637
LPFGKIPIL	9	Unmodified	_LPFGKIPIL_					0	0	0		ENST00000514774.1_1_4:95225018-95255708:-|nuORF;ENSG00000163106|ENST00000295256|HPGDS	ENST00000514774.1_1_4:95225018-95255708:-|nuORF	ENST00000514774.1_1_4:95225018-95255708:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3260498046875	2	499.325871	996.637189	0.30947	0.00015453	0.1888	9.4273E-05	0.49827	0.0002488	499.3258409303479	74.179	0.75327	74.232	73.95	74.703	0.052361					58	25	3	0	0	0	0.015402	1	18999	18999		71.134	35.089	1	2355000			24678	5648	14099	14100	30871	30871					0.1387358624741637
LPFGKIPIL	9	Unmodified	_LPFGKIPIL_					0	0	0		ENST00000514774.1_1_4:95225018-95255708:-|nuORF;ENSG00000163106|ENST00000295256|HPGDS	ENST00000514774.1_1_4:95225018-95255708:-|nuORF	ENST00000514774.1_1_4:95225018-95255708:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.3259582519531	2	499.325871	996.637189	0.39893	0.0001992	0.20922	0.00010447	0.60816	0.00030367	499.3258509010164	74.293	0.67579	74.262	73.967	74.643	-0.030655					57	23	4	0	0	0	0.015402	1	19036	19036		71.134	35.089	1	2270500			24679	5648	14099	14100	30872	30872					0.1387358624741637
LPFGKVTNL	9	Unmodified	_LPFGKVTNL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;PTBP1|p.E189Gfs*76|1|0.06|ENSG00000011304|chr19:804662-804678|AGAACCTCTTCTACCCT/-|frameshift_variant;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-1|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7950439453125	2	494.794935	987.575317	0.52775	0.00026113	-0.01672	-8.2729E-06	0.51103	0.00025285	494.7948848626904	53.363	0.96064	53.363	53.09	54.05	0					79	35	4	0	0	0	0.003673	2	12610	12563;12610		96.936	0	1	1992300			24680	440;2869	14100	14101	30873;30874	30874					0.08103234828263339
LPFGKVTNL	9	Unmodified	_LPFGKVTNL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;PTBP1|p.E189Gfs*76|1|0.06|ENSG00000011304|chr19:804662-804678|AGAACCTCTTCTACCCT/-|frameshift_variant;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-1|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7950744628906	2	494.794935	987.575317	0.48085	0.00023792	0.043676	2.1611E-05	0.52453	0.00025953	494.79491646560894	53.322	0.96991	53.379	53.111	54.081	0.056259					82	36	4	0	0	0	0.0041491	2	12605	12556;12605		93.166	0	1	2037900			24681	440;2869	14100	14101	30875;30876	30876					0.08103234828263339
LPFGKVTNL	9	Unmodified	_LPFGKVTNL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;PTBP1|p.E189Gfs*76|1|0.06|ENSG00000011304|chr19:804662-804678|AGAACCTCTTCTACCCT/-|frameshift_variant;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-1|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7950744628906	2	494.794935	987.575317	0.44869	0.00022201	-0.0036968	-1.8291E-06	0.44499	0.00022018	494.79485797105735	53.485	0.9578	53.476	53.192	54.149	-0.0096054					69	35	3	0	0	0	0.0041491	2	12651	12603;12651		93.166	0	1	1990500			24682	440;2869	14100	14101	30877;30878	30878					0.08103234828263339
LPFGKVTNL	9	Unmodified	_LPFGKVTNL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;PTBP1|p.E189Gfs*76|1|0.06|ENSG00000011304|chr19:804662-804678|AGAACCTCTTCTACCCT/-|frameshift_variant;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-1|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7680969238281	2	494.794935	987.575317	0.65269	0.00032295	-2.9318	-0.0014507	-2.2791	-0.0011277	494.79434517864615	54.694	0.69627	54.678	54.31	55.006	-0.015923					43	24	2	0	0	0	0.13898	1	12973	12973		36.127	0	1	763250			24683	440;2869	14100	14101	30879	30879					0.08103234828263339
LPFGMNII	8	Oxidation (M)	_LPFGM(Oxidation (M))NII_		LPFGM(1)NII		LPFGM(53)NII	0	0	1		nc|ENSG00000089057|Q9UGH3-2|SLC23A2;ENSG00000089057|ENST00000338244|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.7491760253906	2	460.749139	919.483725	0.31609	0.00014564	-0.30298	-0.0001396	0.013105	6.0379E-06	460.74902210913086	72.905	1.1513	72.876	72.516	73.667	-0.029305					96	41	4	0	0	0	0.14465	1	18653	18653		52.693	9.7251	1	1557700			24684	1344	14101	14102	30880	30880		167			0.020762281394581805
LPFGQGLSI	9	Unmodified	_LPFGQGLSI_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|307|2|anti-sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|307|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.77764892578125	2	466.26601	930.517468	0.083951	3.9143E-05	-0.96835	-0.00045151	-0.8844	-0.00041237	466.2651669164376	72.499	1.8116	72.499	70.963	72.775	0					86	65	3	0	0	0	0.20651	1	18453	18453		14.838	0	1	320880	+		24685	22748	14102	14103	30881	30881					0.049429729028588554
LPFGRPRVL	9	Unmodified	_LPFGRPRVL_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3;chr6:131726200-131737355|507|34.85|0.76|5.53|+|ENST00000358229|ENPP3,ENPP3	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.8299560546875	2	527.829643	1053.64473	0.64298	0.00033938	-0.47798	-0.00025229	0.165	8.7093E-05	527.8295653178529	45.285	0.89854	45.285	44.961	45.86	0					115	32	5	0	0	0	0.015674	2	10105	10105;10159		70.716	32.564	1	3577400			24686	5119	14103	14104	30882;30883	30882					0.12005738567700064
LPFGRPRVL	9	Unmodified	_LPFGRPRVL_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3;chr6:131726200-131737355|507|34.85|0.76|5.53|+|ENST00000358229|ENPP3,ENPP3	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.8298950195312	2	527.829643	1053.64473	0.59332	0.00031317	-0.51161	-0.00027004	0.08172	4.3134E-05	527.8296007838748	45.089	0.96138	45.157	44.867	45.828	0.068569					117	33	5	0	0	0	0.015674	2	10094	10044;10094		70.716	32.564	1	3839700			24687	5119	14103	14104	30884;30885	30885					0.12005738567700064
LPFGRPRVL	9	Unmodified	_LPFGRPRVL_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3;chr6:131726200-131737355|507|34.85|0.76|5.53|+|ENST00000358229|ENPP3,ENPP3	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.8298950195312	2	527.829643	1053.64473	0.61091	0.00032246	-0.64247	-0.00033911	-0.031557	-1.6657E-05	527.8295658817132	45.147	0.77721	45.222	44.935	45.713	0.075047					109	28	5	0	0	0	0.015674	2	10036	10036;10082		70.716	40.491	1	3760000			24688	5119	14103	14104	30886;30887	30886					0.12005738567700064
LPFGVPASI	9	Unmodified	_LPFGVPASI_					0	0	0		ENSG00000089775|ENST00000608382|ZBTB25	ENSG00000089775|ENST00000608382|ZBTB25	ENSG00000089775|ENST00000608382|ZBTB25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2699279785156	2	450.763104	899.511654	0.31012	0.00013979	-0.35332	-0.00015926	-0.043197	-1.9472E-05	450.76287936291914	76.442	0.28074	76.411	76.318	76.599	-0.031487					16	9	2	0	0	0	0.080002	1	19678	19678		46.921	8.7697	1	188790			24689	1365	14104	14105	30888	30888					0.057878743911942365
LPFIKFTF	8	Unmodified	_LPFIKFTF_					0	0	0		ENST00000355765.10_1_14:45584217-45584328:+|nuORF	ENST00000355765.10_1_14:45584217-45584328:+|nuORF	ENST00000355765.10_1_14:45584217-45584328:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2593688964844	2	506.796946	1011.57934	0.088077	4.4637E-05	1.3717	0.00069519	1.4598	0.00073983	506.79748965894623	80.85	0.32332	80.915	80.726	81.049	0.065102					23	13	3	0	0	0	0.34337	1	20974	20974		5.2307	2.3415	1	90087			24690	9611	14105	14106	30889	30889					0.07401324321995162
LPFIKFTF	8	Unmodified	_LPFIKFTF_					0	0	0		ENST00000355765.10_1_14:45584217-45584328:+|nuORF	ENST00000355765.10_1_14:45584217-45584328:+|nuORF	ENST00000355765.10_1_14:45584217-45584328:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	506.796946	1011.57934	0.29469	0.00014935	0.95375	0.00048336	1.2484	0.00063271	506.7974153137269	80.917	0.74493	80.917	80.733	81.478	0	0.0010732	-9.1998E-05	NaN	5.2307	46	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98252			24691	9611	14105	14106							0.07401324321995162
LPFKVFMN	8	Unmodified	_LPFKVFMN_					0	0	0		ENST00000498374.1_1_6:16739996-16761588:-|nuORF;ENST00000467008.5_1_6:16739996-16761659:-|nuORF;ENST00000492857.1_1_6:16739996-16761679:-|nuORF	ENST00000498374.1_1_6:16739996-16761588:-|nuORF	ENST00000498374.1_1_6:16739996-16761588:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.82977294921875	2	498.272781	994.531009	0.48	0.00023917	2.5452	0.0012682	3.0252	0.0015074	498.27404152110324	45.431	0.53697	45.496	45.274	45.811	0.065048					29	19	2	0	0	0	0.34046	1	10230	10230		9.3474	6.3522	1	202450			24692	10818	14106	14107	30890	30890					0.03352507410443195
LPFKVVVI	8	Unmodified	_LPFKVVVI_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.8073425292969	2	457.807314	913.600075	0.079567	3.6426E-05	0.16861	7.719E-05	0.24817	0.00011362	457.8072910314187	67.469	1.0953	67.469	67.106	68.202	0					104	38	4	0	0	0	0.065797	3	16936	16887;16936;16989		70.716	38.599	1	3569400			24693	2525	14107	14108	30891;30892;30893	30892					0.13981914701651021
LPFKVVVI	8	Unmodified	_LPFKVVVI_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.80731201171875	2	457.807314	913.600075	0.15206	6.9615E-05	0.08557	3.9175E-05	0.23763	0.00010879	457.807249460399	67.348	1.2089	67.426	67.068	68.277	0.078041					114	42	4	0	0	0	0.065797	4	16900	16851;16900;16951;17093		70.716	36.528	1	3751900			24694	2525	14107	14108	30894;30895;30896;30897	30895					0.13981914701651021
LPFKVVVI	8	Unmodified	_LPFKVVVI_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.807373046875	2	457.807314	913.600075	0.052704	2.4128E-05	0.20702	9.4777E-05	0.25973	0.00011891	457.807309606289	67.499	1.107	67.482	67.148	68.255	-0.016296					108	38	4	0	0	0	0.065797	3	16938	16890;16938;16987		70.716	38.599	1	3697100			24695	2525	14107	14108	30898;30899;30900	30899					0.13981914701651021
LPFLGNILS	9	Unmodified	_LPFLGNILS_					0	0	0		ENSG00000160868|ENST00000651514|CYP3A4	ENSG00000160868|ENST00000651514|CYP3A4	ENSG00000160868|ENST00000651514|CYP3A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.79998779296875	2	487.289485	972.564418	0.46913	0.0002286	-0.010612	-5.1712E-06	0.45852	0.00022343	487.2897040967583	85.748	2.566	85.748	84.527	87.093	0					133	99	2	0	0	0	0.26879	1	22554	22554		13.508	0	1	144700			24696	5495	14108	14109	30901	30901					0.07703832454001258
LPFLGNILS	9	Unmodified	_LPFLGNILS_					0	0	0		ENSG00000160868|ENST00000651514|CYP3A4	ENSG00000160868|ENST00000651514|CYP3A4	ENSG00000160868|ENST00000651514|CYP3A4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	487.289485	972.564418	0.49302	0.00024024	-0.20125	-9.8068E-05	0.29177	0.00014218	487.2896460804139	85.709	2.4062	85.7	84.714	87.12	-0.0090027	-0.024093	-0.00010813	NaN	13.508	130	93	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174650			24697	5495	14108	14109							0.07703832454001258
LPFLKNTVI	9	Unmodified	_LPFLKNTVI_					0	0	0		ENSG00000115446|ENST00000357765|UNC50;ENST00000393493.6_1_2:99232993-99234764:+|nuORF;ENST00000466492.1_1_2:99232887-99234764:+|nuORF	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.826416015625	2	522.826235	1043.63792	0.71495	0.00037379	-0.21492	-0.00011237	0.50002	0.00026143	522.8260176383206	64.339	0.75956	64.339	63.967	64.727	0					60	27	3	0	0	0	0.014206	2	15974	15974;16026		72.968	21.101	1	771000			24698	2648	14109	14110	30902;30903	30902					0.11784380896460789
LPFLKNTVI	9	Unmodified	_LPFLKNTVI_					0	0	0		ENSG00000115446|ENST00000357765|UNC50;ENST00000393493.6_1_2:99232993-99234764:+|nuORF;ENST00000466492.1_1_2:99232887-99234764:+|nuORF	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8263549804688	2	522.826235	1043.63792	0.57624	0.00030127	-0.24955	-0.00013047	0.32669	0.0001708	522.8260224039726	64.242	1.156	64.335	63.958	65.114	0.09288					74	42	3	0	0	0	0.020233	2	15944	15944;16001		63.961	22.121	1	769270			24699	2648	14109	14110	30904;30905	30904					0.11784380896460789
LPFLKNTVI	9	Unmodified	_LPFLKNTVI_					0	0	0		ENSG00000115446|ENST00000357765|UNC50;ENST00000393493.6_1_2:99232993-99234764:+|nuORF;ENST00000466492.1_1_2:99232887-99234764:+|nuORF	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.826416015625	2	522.826235	1043.63792	0.6506	0.00034015	-0.24098	-0.00012599	0.40962	0.00021416	522.8260188196039	64.315	0.78962	64.305	63.962	64.752	-0.0095291					62	28	3	0	0	0	0.014206	1	15988	15988		72.968	31.128	1	792900			24700	2648	14109	14110	30906	30906					0.11784380896460789
LPFLKRLTLI	10	Unmodified	_LPFLKRLTLI_					0	0	0		ENSG00000164743|ENST00000297324|C8orf48	ENSG00000164743|ENST00000297324|C8orf48	ENSG00000164743|ENST00000297324|C8orf48	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.26019287109375	3	405.272548	1212.79581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.115	1	72.172	71.672	72.672	0.056572								0	0	0	0.37523	1	18358	18358		4.1895	0	1				24701	5873	14110	14111	30907	30907					0.1979288015570546
LPFLRITSL	9	Unmodified	_LPFLRITSL_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3;ENST00000430321.5_1_2:170917624-170929931:+|nuORF;nc|ENSG00000144357|Q6ZT12-3|UBR3	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3316650390625	2	530.331685	1058.64882	0.34847	0.00018481	0.044802	2.376E-05	0.39327	0.00020857	530.3316503945493	73.445	0.89947	73.445	73.02	73.92	0					87	31	4	0	0	0	0.0041491	2	18756	18756;18768		93.166	39.333	1	1399800			24702	4577	14111	14112	30908;30909	30908					0.12183783270756976
LPFLRITSL	9	Unmodified	_LPFLRITSL_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3;ENST00000430321.5_1_2:170917624-170929931:+|nuORF;nc|ENSG00000144357|Q6ZT12-3|UBR3	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3316040039062	2	530.331685	1058.64882	0.27518	0.00014594	0.015234	8.079E-06	0.29041	0.00015401	530.3316203195413	73.389	1.5135	73.443	72.382	73.895	0.053833					99	54	4	0	0	0	0.0037449	2	18746	18746;18796		96.367	33.794	1	1412300			24703	4577	14111	14112	30910;30911	30910					0.12183783270756976
LPFLTDTI	8	Unmodified	_LPFLTDTI_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A;ENST00000468280.5_1_19:52693376-52714746:+|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;PPP2R1B|p.I361Yfs*14|1|0.3|ENSG00000137713|chr11:111753526-111753527|TT/-|frameshift_variant;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B	ENSG00000105568|ENST00000322088|PPP2R1A;PPP2R1B|p.I361Yfs*14|1|0.3|ENSG00000137713|chr11:111753526-111753527|TT/-|frameshift_variant	ENSG00000105568|ENST00000322088|PPP2R1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.26025390625	2	460.260394	918.506234	0.0293	1.3486E-05	1.1239	0.00051729	1.1532	0.00053078	460.2610977246179	80.508	0.63696	80.508	80.267	80.904	0					56	26	3	0	0	0	0.049524	1	20937	20937		78.445	25.752	1	654850			24704	1994;4069	14112	14113	30912	30912					0.04372150808717379
LPFLTDTI	8	Unmodified	_LPFLTDTI_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A;ENST00000468280.5_1_19:52693376-52714746:+|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;PPP2R1B|p.I361Yfs*14|1|0.3|ENSG00000137713|chr11:111753526-111753527|TT/-|frameshift_variant;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B	ENSG00000105568|ENST00000322088|PPP2R1A;PPP2R1B|p.I361Yfs*14|1|0.3|ENSG00000137713|chr11:111753526-111753527|TT/-|frameshift_variant	ENSG00000105568|ENST00000322088|PPP2R1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.2610778808594	2	460.260394	918.506234	-0.038872	-1.7891E-05	1.0378	0.00047768	0.99897	0.00045979	460.26114646689024	80.481	0.59576	80.546	80.264	80.859	0.065094					46	22	3	0	0	0	0.073545	1	20943	20943		67.035	14.342	1	584350			24705	1994;4069	14112	14113	30913	30913					0.04372150808717379
LPFLTDTI	8	Unmodified	_LPFLTDTI_					0	0	0		ENSG00000105568|ENST00000322088|PPP2R1A;ENST00000468280.5_1_19:52693376-52714746:+|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B;PPP2R1B|p.I361Yfs*14|1|0.3|ENSG00000137713|chr11:111753526-111753527|TT/-|frameshift_variant;nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B	ENSG00000105568|ENST00000322088|PPP2R1A;PPP2R1B|p.I361Yfs*14|1|0.3|ENSG00000137713|chr11:111753526-111753527|TT/-|frameshift_variant	ENSG00000105568|ENST00000322088|PPP2R1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.2607727050781	2	460.260394	918.506234	0.17555	8.08E-05	0.43516	0.00020029	0.61071	0.00028109	460.2608958233162	80.57	0.60647	80.543	80.233	80.84	-0.026825					46	21	3	0	0	0	0.028313	1	20942	20942		90.836	27.442	1	584900			24706	1994;4069	14112	14113	30914	30914					0.04372150808717379
LPFLTTEV	8	Unmodified	_LPFLTTEV_					0	0	0		nc|ENSG00000169241|Q9BRV3-3|SLC50A1;ENSG00000169241|ENST00000368404|SLC50A1;ENST00000484157.5_1_1:155108136-155110067:+|nuORF;ENST00000488609.5_1_1:155108387-155108853:+|nuORF;ENST00000368405.7_1_1:155108387-155110461:+|nuORF;ENST00000490276.5_1_1:155108315-155110067:+|nuORF	nc|ENSG00000169241|Q9BRV3-3|SLC50A1	nc|ENSG00000169241|Q9BRV3-3|SLC50A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.26123046875	2	460.260394	918.506234	0.4566	0.00021015	1.1931	0.00054914	1.6497	0.00075929	460.2613599710095	74.829	0.72432	74.798	74.642	75.367	-0.031487					39	26	2	0	0	0	0.23581	1	19196	19196		38.151	6.0342	1	273970			24707	6340	14113	14114	30915	30915					0.04372150808717379
LPFLTTEV	8	Unmodified	_LPFLTTEV_					0	0	0		nc|ENSG00000169241|Q9BRV3-3|SLC50A1;ENSG00000169241|ENST00000368404|SLC50A1;ENST00000484157.5_1_1:155108136-155110067:+|nuORF;ENST00000488609.5_1_1:155108387-155108853:+|nuORF;ENST00000368405.7_1_1:155108387-155110461:+|nuORF;ENST00000490276.5_1_1:155108315-155110067:+|nuORF	nc|ENSG00000169241|Q9BRV3-3|SLC50A1	nc|ENSG00000169241|Q9BRV3-3|SLC50A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	460.260394	918.506234	0.37477	0.00017249	1.1852	0.0005455	1.56	0.00071799	460.2611614829729	74.793	0.4995	74.793	74.654	75.154	0	-0.012403	-0.00012168	NaN	38.151	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360960			24708	6340	14113	14114							0.04372150808717379
LPFLTTEV	8	Unmodified	_LPFLTTEV_					0	0	0		nc|ENSG00000169241|Q9BRV3-3|SLC50A1;ENSG00000169241|ENST00000368404|SLC50A1;ENST00000484157.5_1_1:155108136-155110067:+|nuORF;ENST00000488609.5_1_1:155108387-155108853:+|nuORF;ENST00000368405.7_1_1:155108387-155110461:+|nuORF;ENST00000490276.5_1_1:155108315-155110067:+|nuORF	nc|ENSG00000169241|Q9BRV3-3|SLC50A1	nc|ENSG00000169241|Q9BRV3-3|SLC50A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	460.260394	918.506234	0.09165	4.2183E-05	1.6698	0.00076856	1.7615	0.00081075	460.2615652182857	74.774	0.51732	74.826	74.585	75.102	0.052361	0.02047	0.00032444	NaN	38.151	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273240			24709	6340	14113	14114							0.04372150808717379
LPFLVQRTV	9	Unmodified	_LPFLVQRTV_					0	0	0		ENSG00000139567|ENST00000388922|ACVRL1;ENSG00000115170|ENST00000434821|ACVR1	ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.8291625976562	2	536.829309	1071.64407	0.4625	0.00024828	-0.34386	-0.0001846	0.11863	6.3686E-05	536.8288813684476	57.911	0.77884	57.911	57.634	58.413	0					55	27	3	0	0	0	0.0073901	1	14030	14030		83.429	3.8324	1	898770			24710	4245	14114	14115	30916	30916					0.11110899127993434
LPFLVQRTV	9	Unmodified	_LPFLVQRTV_					0	0	0		ENSG00000139567|ENST00000388922|ACVRL1;ENSG00000115170|ENST00000434821|ACVR1	ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.8287963867188	2	536.829309	1071.64407	0.39965	0.00021454	-0.48418	-0.00025992	-0.084531	-4.5379E-05	536.8287787300291	57.801	0.73791	57.887	57.598	58.336	0.085621					62	26	3	0	0	0	0.0041491	1	13991	13991		93.166	3.7652	1	1023100			24711	4245	14114	14115	30917	30917					0.11110899127993434
LPFLVQRTV	9	Unmodified	_LPFLVQRTV_					0	0	0		ENSG00000139567|ENST00000388922|ACVRL1;ENSG00000115170|ENST00000434821|ACVR1	ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.829345703125	2	536.829309	1071.64407	0.55904	0.00030011	-0.4568	-0.00024522	0.10224	5.4884E-05	536.8288326654393	57.984	0.85862	57.967	57.555	58.413	-0.0172					58	31	3	0	0	0	0.15943	1	14019	14019		39.95	3.8227	1	826910			24712	4245	14114	14115	30918	30918					0.11110899127993434
LPFLWLVNI	9	Unmodified	_LPFLWLVNI_					0	0	0		ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	ENSG00000205155|ENST00000587708|PSENEN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2721557617188	2	557.836603	1113.65865	0.78437	0.00043755	1.7279	0.00096386	2.5122	0.0014014	558.3379805424802	50.706	0.11229	50.75	50.654	50.766	0.044891					5	3	2	0	0	0	0.17611	1	11754	11754		14.838	6.6827	1	65356			24713	8275	14115	14116	30919	30919					0.1063697127613068
LPFNAQRI	8	Unmodified	_LPFNAQRI_					0	0	0		ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7769775390625	2	479.777077	957.5396	0.10386	4.9829E-05	0.16632	7.9794E-05	0.27017	0.00012962	479.7770028117936	46.649	0.439	46.649	46.35	46.789	0					25	15	2	0	0	0	0.034972	1	10522	10522		85.357	24.967	1	369790			24714	5229	14116	14117	30920	30920					0.05913197371273782
LPFNAQRI	8	Unmodified	_LPFNAQRI_					0	0	0		ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.777077	957.5396	0.32001	0.00015353	-0.77255	-0.00037065	-0.45254	-0.00021712	479.7765230129051	46.396	0.51479	46.448	46.276	46.79	0.052574	-0.088163	-0.0004992	NaN	85.357	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472950			24715	5229	14116	14117							0.05913197371273782
LPFNAQRI	8	Unmodified	_LPFNAQRI_					0	0	0		ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.777077	957.5396	0.061034	2.9283E-05	0.14858	7.1286E-05	0.20962	0.00010057	479.7772002491224	46.458	0.49212	46.512	46.217	46.709	0.054375	-0.024516	0.00038468	NaN	85.357	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392230			24716	5229	14116	14117							0.05913197371273782
LPFNAQRII	9	Unmodified	_LPFNAQRII_					0	0	0		ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.3179931640625	2	536.319109	1070.62366	0.18713	0.00010036	-0.69175	-0.000371	-0.50462	-0.00027064	536.3185537142324	59.889	1.1202	59.889	59.055	60.175	0					77	39	3	0	0	0	0.015402	2	14648	14648;14662		71.134	16.36	1	1020700			24717	5229	14117	14118	30921;30922	30921					0.09117728468186215
LPFNAQRII	9	Unmodified	_LPFNAQRII_					0	0	0		ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.318359375	2	536.319109	1070.62366	0.0021794	1.1689E-06	-0.38721	-0.00020767	-0.38503	-0.0002065	536.318553535263	59.697	0.80097	59.792	59.354	60.155	0.095089					76	28	4	0	0	0	0.012929	2	14589	14589;14609		74.929	22.661	1	1010600			24718	5229	14117	14118	30923;30924	30923					0.09117728468186215
LPFNAQRII	9	Unmodified	_LPFNAQRII_					0	0	0		ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.318115234375	2	536.319109	1070.62366	0.44415	0.00023821	-0.57409	-0.0003079	-0.12994	-6.9689E-05	536.3184824318062	59.84	0.77001	59.829	59.398	60.168	-0.011486					42	26	2	0	0	0	0.017391	1	14630	14630		68.081	15.812	1	1070300			24719	5229	14117	14118	30925	30925					0.09117728468186215
LPFNVKVSV	9	Unmodified	_LPFNVKVSV_					0	0	0		nc|ENSG00000172673|Q8N1K5-3|THEMIS;nc|ENSG00000172673|Q8N1K5-2|THEMIS;ENSG00000172673|ENST00000368248|THEMIS;nc|ENSG00000172673|Q8N1K5-4|THEMIS	nc|ENSG00000172673|Q8N1K5-3|THEMIS	nc|ENSG00000172673|Q8N1K5-3|THEMIS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.80279541015625	2	501.80276	1001.59097	0.69124	0.00034687	-0.42927	-0.00021541	0.26197	0.00013146	501.8024734506839	60.824	0.5589	60.824	60.521	61.08	0					35	19	2	0	0	0	0.00019464	2	14874	14874;14927		133.05	83.119	1	1960400			24720	6653	14118	14119	30926;30927	30926					0.09023521345329755
LPFNVKVSV	9	Unmodified	_LPFNVKVSV_					0	0	0		nc|ENSG00000172673|Q8N1K5-3|THEMIS;nc|ENSG00000172673|Q8N1K5-2|THEMIS;ENSG00000172673|ENST00000368248|THEMIS;nc|ENSG00000172673|Q8N1K5-4|THEMIS	nc|ENSG00000172673|Q8N1K5-3|THEMIS	nc|ENSG00000172673|Q8N1K5-3|THEMIS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.802734375	2	501.80276	1001.59097	0.69936	0.00035094	-0.27386	-0.00013742	0.42551	0.00021352	501.80258723589725	60.672	0.51266	60.769	60.552	61.065	0.096985					40	17	3	0	0	0	7.3453E-05	2	14848	14848;14895		145.13	95.197	1	2027800			24721	6653	14118	14119	30928;30929	30928					0.09023521345329755
LPFNVKVSV	9	Unmodified	_LPFNVKVSV_					0	0	0		nc|ENSG00000172673|Q8N1K5-3|THEMIS;nc|ENSG00000172673|Q8N1K5-2|THEMIS;ENSG00000172673|ENST00000368248|THEMIS;nc|ENSG00000172673|Q8N1K5-4|THEMIS	nc|ENSG00000172673|Q8N1K5-3|THEMIS	nc|ENSG00000172673|Q8N1K5-3|THEMIS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.80316162109375	2	501.80276	1001.59097	0.72743	0.00036502	-0.15475	-7.7654E-05	0.57268	0.00028737	501.80265585576655	60.759	0.48039	60.749	60.487	60.968	-0.0094566					41	17	3	0	0	0	7.3453E-05	2	14860	14860;14905		145.13	89.627	1	1640300			24722	6653	14118	14119	30930;30931	30930					0.09023521345329755
LPFPFHGLLSF	11	Unmodified	_LPFPFHGLLSF_					0	0	0		ENST00000446262.1_2_19:37019350-37025846:+|nuORF	ENST00000446262.1_2_19:37019350-37025846:+|nuORF	ENST00000446262.1_2_19:37019350-37025846:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.8299560546875	2	637.850242	1273.68593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.217	1	62.217	61.717	62.717	0								0	0	0	0.30959	1	15336	15336		17.113	5.6182	1				24723	10592	14119	14120	30932	30932					0.06003454816504927
LPFPFHGLLSF	11	Unmodified	_LPFPFHGLLSF_					0	0	0		ENST00000446262.1_2_19:37019350-37025846:+|nuORF	ENST00000446262.1_2_19:37019350-37025846:+|nuORF	ENST00000446262.1_2_19:37019350-37025846:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.8301391601562	2	637.850242	1273.68593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.178	1	62.17	61.67	62.67	-0.0085526								0	0	0	0.33176	1	15315	15315		12.241	0	1				24724	10592	14119	14120	30933	30933					0.06003454816504927
LPFPGPLSA	9	Unmodified	_LPFPGPLSA_					0	0	0		ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2812805175781	2	449.755278	897.496004	0.20087	9.0341E-05	-0.14472	-6.5088E-05	0.056149	2.5253E-05	449.7552014526289	58.95	0.95815	59.041	58.53	59.488	0.091305					49	33	2	0	0	0	0.15464	1	14314	14314		38.151	0	1	164890			24725	316	14120	14121	30934	30934					0.04315587874134508
LPFPPHRLWA	10	Unmodified	_LPFPPHRLWA_					0	0	0		ENST00000228928.11_1_12:113409775-113410174:+|nuORF	ENST00000228928.11_1_12:113409775-113410174:+|nuORF	ENST00000228928.11_1_12:113409775-113410174:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.9023742675781	3	411.901226	1232.68185	0.10649	4.3863E-05	1.2588	0.00051848	1.3652	0.00056234	411.9022791510888	105.73	0.78893	105.73	105.41	106.2	0.0031738					216	113	3	0	0	0	0.40992	1	28014	28014		0.69767	0.69767	1	580630			24726	8853	14121	14122	30935	30935					0.0748141011347343
LPFPRRRVQS	10	Unmodified	_LPFPRRRVQS_					0	0	0		ENST00000261745.8_1_12:112546638-112546719:-|nuORF	ENST00000261745.8_1_12:112546638-112546719:-|nuORF	ENST00000261745.8_1_12:112546638-112546719:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.3828735351562	2	628.372738	1254.73092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.537	1	82.537	82.037	83.037	0								0	0	0	0.37869	1	21552	21552		2.7352	0.23671	1				24727	8975	14122	14123	30936	30936					0.11374698402391914
LPFPSNITL	9	Unmodified	_LPFPSNITL_					0	0	0		ENSG00000129566|ENST00000262715|TEP1;nc|ENSG00000129566|Q99973-2|TEP1	ENSG00000129566|ENST00000262715|TEP1	ENSG00000129566|ENST00000262715|TEP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2862854003906	2	501.286943	1000.55933	0.33162	0.00016624	2.8288	0.0014181	3.1605	0.0015843	501.28879140042784	80.527	1.6905	80.527	80.009	81.699	0					111	72	3	0	0	0	0.17242	1	20947	20947		36.127	5.4905	1	444060			24728	3433	14123	14124	30937	30937					0.059075285913763764
LPFPSNITL	9	Unmodified	_LPFPSNITL_					0	0	0		ENSG00000129566|ENST00000262715|TEP1;nc|ENSG00000129566|Q99973-2|TEP1	ENSG00000129566|ENST00000262715|TEP1	ENSG00000129566|ENST00000262715|TEP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.287109375	2	501.286943	1000.55933	0.20706	0.0001038	0.34606	0.00017348	0.55313	0.00027727	501.2873110370301	80.514	0.7126	80.579	80.287	80.999	0.065094					52	28	3	0	0	0	0.17242	1	20921	20921		36.127	5.9022	1	488350			24729	3433	14123	14124	30938	30938					0.059075285913763764
LPFPTVLRV	9	Unmodified	_LPFPTVLRV_					0	0	0		ENSG00000175463|ENST00000542590|TBC1D10C;ENST00000529635.5_1_11:67174176-67177222:+|nuORF;ENST00000526474.1_1_11:67174309-67174885:+|nuORF	ENSG00000175463|ENST00000542590|TBC1D10C	ENSG00000175463|ENST00000542590|TBC1D10C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.326416015625	2	521.326402	1040.63825	0.463	0.00024137	-0.035081	-1.8288E-05	0.42792	0.00022308	521.3262962831661	70.618	0.74184	70.618	70.301	71.043	0					57	26	3	0	0	0	0.020233	1	17935	17935		63.961	29.559	1	728150			24730	6865	14124	14125	30939	30939					0.11955800616328816
LPFPTVLRV	9	Unmodified	_LPFPTVLRV_					0	0	0		ENSG00000175463|ENST00000542590|TBC1D10C;ENST00000529635.5_1_11:67174176-67177222:+|nuORF;ENST00000526474.1_1_11:67174309-67174885:+|nuORF	ENSG00000175463|ENST00000542590|TBC1D10C	ENSG00000175463|ENST00000542590|TBC1D10C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.3264770507812	2	521.326402	1040.63825	0.41058	0.00021404	-0.19538	-0.00010186	0.2152	0.00011219	521.3261909167915	70.581	0.6874	70.642	70.268	70.955	0.060783					59	24	3	0	0	0	0.0098873	1	17893	17893		79.596	31.848	1	788070			24731	6865	14124	14125	30940	30940					0.11955800616328816
LPFPTVLRV	9	Unmodified	_LPFPTVLRV_					0	0	0		ENSG00000175463|ENST00000542590|TBC1D10C;ENST00000529635.5_1_11:67174176-67177222:+|nuORF;ENST00000526474.1_1_11:67174309-67174885:+|nuORF	ENSG00000175463|ENST00000542590|TBC1D10C	ENSG00000175463|ENST00000542590|TBC1D10C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.326416015625	2	521.326402	1040.63825	0.46756	0.00024375	-0.18463	-9.6255E-05	0.28292	0.00014749	521.3261971980938	70.649	0.69762	70.624	70.301	70.999	-0.024872					60	24	3	0	0	0	0.20881	1	17924	17924		27.629	5.8822	1	577330			24732	6865	14124	14125	30941	30941					0.11955800616328816
LPFPVDQIT	9	Unmodified	_LPFPVDQIT_					0	0	0		ENSG00000112182|ENST00000257749|BACH2	ENSG00000112182|ENST00000257749|BACH2	ENSG00000112182|ENST00000257749|BACH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7324829101562	2	515.2844	1028.55425	0.42713	0.00022009	3.3517	0.0017271	3.7788	0.0019471	515.2839147573693	72.812	1.0121	72.812	72.295	73.307	0					63	36	3	0	0	0	0.24311	1	18524	18524		16.942	6.7589	1	92998			24733	2419	14125	14126	30942	30942					0.04111224728740126
LPFQGVKIS	9	Unmodified	_LPFQGVKIS_					0	0	0			REV__nc|ENSG00000184313|Q68CQ1-4|MROH7	REV__nc|ENSG00000184313|Q68CQ1-4|MROH7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7951965332031	2	494.794935	987.575317	0.44869	0.00022201	-0.0036968	-1.8291E-06	0.44499	0.00022018	494.79485797105735	53.485	0.9578	53.476	53.192	54.149	-0.0096054					69	35	3	0	0	0	0.19747	1	12703	12703		24.021	0.87215	1	1990500	+		24734	18311	14126	14127	30943	30943					0.08103234828286077
LPFQINLA	8	Unmodified	_LPFQINLA_					0	0	0		ENST00000411922.5_1_3:183960137-183960278:-|nuORF	ENST00000411922.5_1_3:183960137-183960278:-|nuORF	ENST00000411922.5_1_3:183960137-183960278:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.9346618652344	2	458.268553	914.522553	0.20414	9.3549E-05	-0.045519	-2.086E-05	0.15862	7.2689E-05	458.26853846142507	45.245	0.86669	45.245	44.909	45.776	0					55	31	2	0	0	0	0.31375	1	10237	10237		19.439	0	1	1692800			24735	10272	14127	14128	30944	30944					0.06187276765444949
LPFQQFEI	8	Unmodified	_LPFQQFEI_					0	0	0		nc|ENSG00000138185|P49961-4|ENTPD1;nc|ENSG00000138185|P49961-5|ENTPD1;ENSG00000138185|ENST00000371205|ENTPD1;nc|ENSG00000138185|P49961-2|ENTPD1;nc|ENSG00000138185|P49961-6|ENTPD1	nc|ENSG00000138185|P49961-4|ENTPD1	nc|ENSG00000138185|P49961-4|ENTPD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.271484375	2	511.271293	1020.52803	0.29873	0.00015273	-0.056337	-2.8804E-05	0.24239	0.00012393	511.2712630533337	80.389	1.2674	80.389	80.035	81.302	0					105	53	4	0	0	0	0.071344	3	20888	20844;20888;20935		68.081	18.148	1	1939600			24736	4129	14128	14129	30945;30946;30947	30946					0.01858955557270292
LPFQQFEI	8	Unmodified	_LPFQQFEI_					0	0	0		nc|ENSG00000138185|P49961-4|ENTPD1;nc|ENSG00000138185|P49961-5|ENTPD1;ENSG00000138185|ENST00000371205|ENTPD1;nc|ENSG00000138185|P49961-2|ENTPD1;nc|ENSG00000138185|P49961-6|ENTPD1	nc|ENSG00000138185|P49961-4|ENTPD1	nc|ENSG00000138185|P49961-4|ENTPD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.27142333984375	2	511.271293	1020.52803	0.16587	8.4804E-05	0.066625	3.4063E-05	0.23249	0.00011887	511.2713422648273	80.301	1.3493	80.366	80.029	81.378	0.065102					111	58	4	0	0	0	0.071344	3	20851	20799;20851;20899		68.081	18.148	1	2052700			24737	4129	14128	14129	30948;30949;30950	30949					0.01858955557270292
LPFQQFEI	8	Unmodified	_LPFQQFEI_					0	0	0		nc|ENSG00000138185|P49961-4|ENTPD1;nc|ENSG00000138185|P49961-5|ENTPD1;ENSG00000138185|ENST00000371205|ENTPD1;nc|ENSG00000138185|P49961-2|ENTPD1;nc|ENSG00000138185|P49961-6|ENTPD1	nc|ENSG00000138185|P49961-4|ENTPD1	nc|ENSG00000138185|P49961-4|ENTPD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.27142333984375	2	511.271293	1020.52803	0.24469	0.0001251	-0.10255	-5.243E-05	0.14214	7.2672E-05	511.2712171561163	80.402	1.2882	80.376	80.06	81.348	-0.026825					115	49	4	0	0	0	0.071344	3	20885	20837;20885;20930		68.081	18.148	1	2007500			24738	4129	14128	14129	30951;30952;30953	30952					0.01858955557270292
LPFRALLQI	9	Unmodified	_LPFRALLQI_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1;nc|ENSG00000141576|Q96PX1-2|RNF157;ENSG00000141576|ENST00000269391|RNF157	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.8400268554688	2	535.839677	1069.6648	0.73029	0.00039132	-0.24864	-0.00013323	0.48165	0.00025809	535.8394952476858	74.951	1.2577	74.951	74.537	75.794	0					116	44	4	0	0	0	0.0028127	1	19276	19276		103.75	14.845	1	2723900			24739	1788	14129	14130	30954	30954					0.13275489507645943
LPFRALLQI	9	Unmodified	_LPFRALLQI_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1;nc|ENSG00000141576|Q96PX1-2|RNF157;ENSG00000141576|ENST00000269391|RNF157	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.83984375	2	535.839677	1069.6648	0.36172	0.00019382	0.11667	6.2518E-05	0.47839	0.00025634	535.8396887553067	74.919	1.3729	74.971	74.488	75.861	0.052361					128	49	4	0	0	0	0.0037552	3	19271	19127;19220;19271		96.285	14.342	1	3105800			24740	1788	14129	14130	30955;30956;30957	30957					0.13275489507645943
LPFRALLQI	9	Unmodified	_LPFRALLQI_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1;nc|ENSG00000141576|Q96PX1-2|RNF157;ENSG00000141576|ENST00000269391|RNF157	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8399047851562	2	535.839677	1069.6648	0.76056	0.00040754	-0.17376	-9.3105E-05	0.58681	0.00031443	535.8395202446183	75.01	1.1897	74.979	74.528	75.718	-0.031487					114	43	4	0	0	0	0.0042343	1	19277	19277		92.491	14.342	1	2876800			24741	1788	14129	14130	30958	30958					0.13275489507645943
LPFRDQVILL	10	Unmodified	_LPFRDQVILL_					0	0	0		ENSG00000278570|ENST00000617575|NR2E3;nc|ENSG00000278570|Q9Y5X4-2|NR2E3	ENSG00000278570|ENST00000617575|NR2E3	ENSG00000278570|ENST00000617575|NR2E3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.26007080078125	3	405.248291	1212.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.78	1	71.836	71.336	72.336	0.056572								0	0	0	0.35542	1	18257	18257		7.1017	0	1				24742	8744	14130	14131	30959	30959					0.12519126362280986
LPFRDQVILL	10	Unmodified	_LPFRDQVILL_					0	0	0		ENSG00000278570|ENST00000617575|NR2E3;nc|ENSG00000278570|Q9Y5X4-2|NR2E3	ENSG00000278570|ENST00000617575|NR2E3	ENSG00000278570|ENST00000617575|NR2E3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2601013183594	3	405.248291	1212.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.94	1	71.996	71.496	72.496	0.056572								0	0	0	0.35542	1	18306	18306		7.1017	0	1				24743	8744	14130	14131	30960	30960					0.12519126362280986
LPFRDQVILL	10	Unmodified	_LPFRDQVILL_					0	0	0		ENSG00000278570|ENST00000617575|NR2E3;nc|ENSG00000278570|Q9Y5X4-2|NR2E3	ENSG00000278570|ENST00000617575|NR2E3	ENSG00000278570|ENST00000617575|NR2E3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2600402832031	3	405.248291	1212.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.707	1	71.68	71.18	72.18	-0.027275								0	0	0	0.35542	1	18230	18230		7.1017	0	1				24744	8744	14130	14131	30961	30961					0.12519126362280986
LPFRDQVILL	10	Unmodified	_LPFRDQVILL_					0	0	0		ENSG00000278570|ENST00000617575|NR2E3;nc|ENSG00000278570|Q9Y5X4-2|NR2E3	ENSG00000278570|ENST00000617575|NR2E3	ENSG00000278570|ENST00000617575|NR2E3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2601623535156	3	405.248291	1212.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.029	1	72.001	71.501	72.501	-0.027275								0	0	0	0.35542	1	18327	18327		7.1017	0	1				24745	8744	14130	14131	30962	30962					0.12519126362280986
LPFRMVSV	8	Oxidation (M)	_LPFRM(Oxidation (M))VSV_		LPFRM(1)VSV		LPFRM(79)VSV	0	0	1		ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7679748535156	2	482.767863	963.521173	0.47031	0.00022705	0.042387	2.0463E-05	0.5127	0.00024752	482.7678081999636	47.85	1.1165	47.85	47.549	48.665	0					82	39	3	0	0	0	0.048928	2	10896	10896;10948		78.728	27.873	1	6585000			24746	7680	14131	14132	30963;30964	30963		846			0.037953194050714956
LPFRMVSV	8	Oxidation (M)	_LPFRM(Oxidation (M))VSV_		LPFRM(1)VSV		LPFRM(79)VSV	0	0	1		ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7679748535156	2	482.767863	963.521173	0.61928	0.00029897	-0.077182	-3.7261E-05	0.5421	0.00026171	482.76771696225404	47.814	0.77564	47.861	47.539	48.314	0.047523					70	28	3	0	0	0	0.048928	1	10896	10896		78.728	27.873	1	6643100			24747	7680	14131	14132	30965	30965		846			0.037953194050714956
LPFRMVSV	8	Oxidation (M)	_LPFRM(Oxidation (M))VSV_		LPFRM(1)VSV		LPFRM(72)VSV	0	0	1		ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	ENSG00000187474|ENST00000339223|FPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7680358886719	2	482.767863	963.521173	0.49718	0.00024002	0.085955	4.1496E-05	0.58314	0.00028152	482.7677741627733	47.823	0.78967	47.866	47.53	48.32	0.04332					64	29	3	0	0	0	0.063256	1	10891	10891		71.922	21.067	1	6037500			24748	7680	14131	14132	30966	30966		846			0.037953194050714956
LPFRTTPF	8	Unmodified	_LPFRTTPF_					0	0	0			REV__ENST00000546629.1_1_12:108620775-108626860:+|nuORF	REV__ENST00000546629.1_1_12:108620775-108626860:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.278076171875	2	489.774003	977.533452	0.2783	0.00013631	-0.32603	-0.00015968	-0.047725	-2.3375E-05	489.7737271700556	51.917	0.70672	51.917	51.676	52.382	0					55	25	3	0	0	0	0.3366	1	12222	12222		7.9102	0.62092	1	1093700	+		24749	13797	14132	14133	30967	30967					0.043786791397337765
LPFRVIPLV	9	Unmodified	_LPFRVIPLV_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000480260.1_1_3:183899436-183900037:+|nuORF;ENST00000461733.5_1_3:183898306-183901401:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3447875976562	2	527.344595	1052.67464	0.37911	0.00019992	0.16596	8.7517E-05	0.54507	0.00028744	527.3445056091605	75.46	0.7703	75.46	75.206	75.976	0					82	27	4	0	0	0	0.044952	2	19376	19376;19430		54.774	30.211	1	1372200			24750	5510	14133	14134	30968;30969	30968					0.15040677513025003
LPFRVIPLV	9	Unmodified	_LPFRVIPLV_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000480260.1_1_3:183899436-183900037:+|nuORF;ENST00000461733.5_1_3:183898306-183901401:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3447265625	2	527.344595	1052.67464	0.459	0.00024205	0.15548	8.1991E-05	0.61448	0.00032404	527.3444897293768	75.448	0.80379	75.5	75.187	75.991	0.052361					86	29	4	0	0	0	0.044952	2	19348	19348;19398		54.774	26.599	1	1270600			24751	5510	14133	14134	30970;30971	30970					0.15040677513025003
LPFRVIPLV	9	Unmodified	_LPFRVIPLV_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000480260.1_1_3:183899436-183900037:+|nuORF;ENST00000461733.5_1_3:183898306-183901401:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3447875976562	2	527.344595	1052.67464	0.60159	0.00031725	-0.042211	-2.226E-05	0.55938	0.00029499	527.3444027504008	75.534	0.78438	75.502	75.235	76.02	-0.031479					84	28	4	0	0	0	0.044952	2	19379	19379;19432		54.774	36.639	1	1359900			24752	5510	14133	14134	30972;30973	30972					0.15040677513025003
LPFRVLLV	8	Unmodified	_LPFRVLLV_					0	0	0		ENST00000461531.5_1_2:74648856-74650350:+|nuORF;ENST00000469932.5_1_2:74649280-74650140:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54	ENST00000461531.5_1_2:74648856-74650350:+|nuORF	ENST00000461531.5_1_2:74648856-74650350:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.81829833984375	2	478.818213	955.621873	0.22679	0.00010859	-0.074338	-3.5594E-05	0.15245	7.2998E-05	478.8180796662929	73.037	1.0988	73.037	72.696	73.795	0					105	39	4	0	0	0	0.15515	3	18602	18602;18650;18702		50.855	18.738	1	2965700			24753	335	14134	14135	30974;30975;30976	30974					0.14228719450215976
LPFRVLLV	8	Unmodified	_LPFRVLLV_					0	0	0		ENST00000461531.5_1_2:74648856-74650350:+|nuORF;ENST00000469932.5_1_2:74649280-74650140:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54	ENST00000461531.5_1_2:74648856-74650350:+|nuORF	ENST00000461531.5_1_2:74648856-74650350:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.8182678222656	2	478.818213	955.621873	0.20234	9.6882E-05	-0.032941	-1.5773E-05	0.16939	8.1109E-05	478.8180954976183	72.996	1.0178	73.049	72.707	73.725	0.053833					104	36	4	0	0	0	0.15515	3	18583	18583;18629;18680		50.855	18.738	1	2895300			24754	335	14134	14135	30977;30978;30979	30977					0.14228719450215976
LPFRVLLV	8	Unmodified	_LPFRVLLV_					0	0	0		ENST00000461531.5_1_2:74648856-74650350:+|nuORF;ENST00000469932.5_1_2:74649280-74650140:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54	ENST00000461531.5_1_2:74648856-74650350:+|nuORF	ENST00000461531.5_1_2:74648856-74650350:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.81817626953125	2	478.818213	955.621873	0.37907	0.0001815	-0.1718	-8.2262E-05	0.20726	9.9242E-05	478.8180238271273	73.065	1.0878	73.036	72.71	73.798	-0.029305					106	39	4	0	0	0	0.20518	2	18652	18601;18652		42.095	9.9776	1	2713100			24755	335	14134	14135	30980;30981	30981					0.14228719450215976
LPFSESLNK	9	Unmodified	_LPFSESLNK_					0	0	0		ENSG00000165490|ENST00000533655|DDIAS	ENSG00000165490|ENST00000533655|DDIAS	ENSG00000165490|ENST00000533655|DDIAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7805786132812	2	517.779482	1033.54441	0.61111	0.00031642	0.69318	0.00035891	1.3043	0.00067534	517.7799158713574	84.501	0.96168	84.501	84.163	85.125	0					53	36	2	0	0	0	0.21389	1	22107	22107		25.399	0	1	373740			24756	5966	14135	14136	30982	30982					0.028980367233771176
LPFSESLNK	9	Unmodified	_LPFSESLNK_					0	0	0		ENSG00000165490|ENST00000533655|DDIAS	ENSG00000165490|ENST00000533655|DDIAS	ENSG00000165490|ENST00000533655|DDIAS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	517.779482	1033.54441	0.53757	0.00027834	0.388	0.0002009	0.92557	0.00047924	517.7798620279804	84.416	0.70395	84.493	84.247	84.951	0.077095	0.00097692	-0.00016823	NaN	25.399	49	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295570			24757	5966	14135	14136							0.028980367233771176
LPFSESLNK	9	Unmodified	_LPFSESLNK_					0	0	0		ENSG00000165490|ENST00000533655|DDIAS	ENSG00000165490|ENST00000533655|DDIAS	ENSG00000165490|ENST00000533655|DDIAS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	517.779482	1033.54441	0.49147	0.00025447	0.56525	0.00029268	1.0567	0.00054715	517.7796908174437	84.494	0.79131	84.482	84.207	84.998	-0.01284	-0.010275	1.5332E-05	NaN	25.399	59	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	423550			24758	5966	14135	14136							0.028980367233771176
LPFSFEHI	8	Unmodified	_LPFSFEHI_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1;ENST00000588806.1_1_17:40665776-40673135:+|nuORF;ENST00000592831.1_1_17:40673015-40673135:+|nuORF;ENST00000587299.1_1_17:40672405-40673135:+|nuORF	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.25830078125	2	495.258185	988.501818	0.22929	0.00011356	0.48365	0.00023953	0.71294	0.00035309	495.2582070874726	65.268	0.8331	65.268	64.988	65.821	0					95	29	4	0	0	0	0.014355	1	16268	16268		109.63	58.774	1	1768900			24759	562	14136	14137	30983	30983					0.007106863857984536
LPFSFEHI	8	Unmodified	_LPFSFEHI_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1;ENST00000588806.1_1_17:40665776-40673135:+|nuORF;ENST00000592831.1_1_17:40673015-40673135:+|nuORF;ENST00000587299.1_1_17:40672405-40673135:+|nuORF	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.25830078125	2	495.258185	988.501818	0.021149	1.0474E-05	0.72537	0.00035925	0.74652	0.00036972	495.25833366599426	65.173	0.77371	65.262	64.982	65.756	0.088882					81	28	4	0	0	0	0.034972	1	16221	16221		85.357	28.815	1	2122200			24760	562	14136	14137	30984	30984					0.007106863857984536
LPFSFEHI	8	Unmodified	_LPFSFEHI_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1;ENST00000588806.1_1_17:40665776-40673135:+|nuORF;ENST00000592831.1_1_17:40673015-40673135:+|nuORF;ENST00000587299.1_1_17:40672405-40673135:+|nuORF	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2582702636719	2	495.258185	988.501818	0.16668	8.2551E-05	0.59637	0.00029536	0.76305	0.00037791	495.2582599288325	65.275	1.1964	65.264	64.947	66.143	-0.011337					105	43	4	0	0	0	0.030072	1	16244	16244		101.72	58.754	1	2218000			24761	562	14136	14137	30985	30985					0.007106863857984536
LPFSHPLFI	9	Unmodified	_LPFSHPLFI_					0	0	0		ENST00000316543.14_1_12:125591673-125609365:+|nuORF;nc|ENSG00000081760|Q86V21-2|AACS;ENSG00000081760|ENST00000316519|AACS	ENST00000316543.14_1_12:125591673-125609365:+|nuORF	ENST00000316543.14_1_12:125591673-125609365:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.8060302734375	2	535.805303	1069.59605	0.56025	0.00030018	0.19987	0.00010709	0.76012	0.00040728	535.8056713282416	72.243	1.8269	72.243	71.911	73.738	0					119	66	2	0	0	0	0.00097449	3	18410	18410;18462;18538		123.1	41.232	1	3980600			24762	1187	14137	14138	30986;30987;30988	30986					0.0640382520791718
LPFSHPLFI	9	Unmodified	_LPFSHPLFI_					0	0	0		ENST00000316543.14_1_12:125591673-125609365:+|nuORF;nc|ENSG00000081760|Q86V21-2|AACS;ENSG00000081760|ENST00000316519|AACS	ENST00000316543.14_1_12:125591673-125609365:+|nuORF	ENST00000316543.14_1_12:125591673-125609365:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8059692382812	2	535.805303	1069.59605	0.48749	0.0002612	0.22617	0.00012118	0.71366	0.00038239	535.8057558416431	72.182	1.9044	72.239	71.896	73.8	0.056572					157	68	5	0	0	0	0.00207	2	18387	18387;18440		109.63	27.765	1	3895600			24763	1187	14137	14138	30989;30990	30989					0.0640382520791718
LPFSHPLFI	9	Unmodified	_LPFSHPLFI_					0	0	0		ENST00000316543.14_1_12:125591673-125609365:+|nuORF;nc|ENSG00000081760|Q86V21-2|AACS;ENSG00000081760|ENST00000316519|AACS	ENST00000316543.14_1_12:125591673-125609365:+|nuORF	ENST00000316543.14_1_12:125591673-125609365:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8059692382812	2	535.805303	1069.59605	0.57182	0.00030639	0.2091	0.00011204	0.78092	0.00041842	535.805772304831	72.28	1.9269	72.253	71.819	73.746	-0.027275					145	69	4	0	0	0	0.00207	2	18447	18447;18492		109.63	38.914	1	3898600			24764	1187	14137	14138	30991;30992	30991					0.0640382520791718
LPFSKGIFL	9	Unmodified	_LPFSKGIFL_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.30828857421875	2	511.307678	1020.6008	0.34278	0.00017526	1.0329	0.00052811	1.3756	0.00070337	511.30791195540365	70.453	0.74189	70.453	70.131	70.873	0					51	26	3	0	0	0	0.12279	1	17885	17885		34.932	8.0484	1	412230			24765	3371;10949	14138	14139	30993	30993					0.09132709350694768
LPFSKGIFL	9	Unmodified	_LPFSKGIFL_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.307861328125	2	511.307678	1020.6008	0.29205	0.00014933	0.79908	0.00040858	1.0911	0.00055791	511.3079494390892	70.437	0.58046	70.497	70.299	70.88	0.060783					37	20	2	0	0	0	0.16685	1	17896	17896		28.495	1.6109	1	404050			24766	3371;10949	14138	14139	30994	30994					0.09132709350694768
LPFSKGILL	9	Unmodified	_LPFSKGILL_					0	0	0		DOCK4|p.F552L|1|0.15|ENSG00000128512|chr7:111877118-111877118|G/T|missense_variant	DOCK4|p.F552L|1|0.15|ENSG00000128512|chr7:111877118-111877118|G/T|missense_variant	DOCK4|p.F552L|1|0.15|ENSG00000128512|chr7:111877118-111877118|G/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.3030090332031	2	494.315503	986.616454	0.76222	0.00037678	-0.90123	-0.00044549	-0.13901	-6.8712E-05	494.3149925047082	60.554	0.45704	60.545	60.461	60.918	-0.0094566					26	16	2	0	0	0	0.2616	1	14910	14910		14.582	0	1	248150			24767	272	14139	14140	30995	30995					0.12260995867757174
LPFSLAHL	8	Unmodified	_LPFSLAHL_					0	0	0		ENSG00000171860|ENST00000307637|C3AR1	ENSG00000171860|ENST00000307637|C3AR1	ENSG00000171860|ENST00000307637|C3AR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.7773742675781	2	449.263271	896.511988	0.52444	0.00023561	-3.9978	-0.001796	-3.4733	-0.0015604	449.2616431909709	33.885	0.79153	33.885	33.456	34.247	0					38	28	2	0	0	0	0.32778	1	6599	6599		20.871	0	1	172170			24768	6586	14140	14141	30996	30996					0.059592941110167885
LPFSLAHL	8	Unmodified	_LPFSLAHL_					0	0	0		ENSG00000171860|ENST00000307637|C3AR1	ENSG00000171860|ENST00000307637|C3AR1	ENSG00000171860|ENST00000307637|C3AR1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	449.263271	896.511988	0.080751	3.6278E-05	-4.2034	-0.0018885	-4.1227	-0.0018522	449.26136827574373	33.718	0.63183	33.784	33.577	34.209	0.066704	-0.023779	0.00061102	NaN	20.871	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193120			24769	6586	14140	14141							0.059592941110167885
LPFSPLVI	8	Unmodified	_LPFSPLVI_					0	0	0		nc|ENSG00000196843|Q03989-5|ARID5A;ENSG00000196843|ENST00000357485|ARID5A;ENST00000497920.1_1_2:97215573-97218047:+|nuORF	nc|ENSG00000196843|Q03989-5|ARID5A	nc|ENSG00000196843|Q03989-5|ARID5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.2759094238281	2	443.275847	884.537141	0.40574	0.00017986	-0.2076	-9.2023E-05	0.19815	8.7833E-05	443.2757057720592	87.083	1.0371	87.083	86.728	87.765	0					153	44	5	0	0	0	0.25055	1	22964	22964		36.466	2.2788	1	8852400			24770	7905	14141	14142	30997	30997					0.09025348913598918
LPFSPLVI	8	Unmodified	_LPFSPLVI_					0	0	0		nc|ENSG00000196843|Q03989-5|ARID5A;ENSG00000196843|ENST00000357485|ARID5A;ENST00000497920.1_1_2:97215573-97218047:+|nuORF	nc|ENSG00000196843|Q03989-5|ARID5A	nc|ENSG00000196843|Q03989-5|ARID5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.27593994140625	2	443.275847	884.537141	0.20904	9.2662E-05	-0.076572	-3.3942E-05	0.13247	5.8719E-05	443.2757471050193	86.989	1.2657	87.076	86.682	87.948	0.08709					191	59	5	0	0	0	0.20019	1	22914	22914		42.968	8.7807	1	7242200			24771	7905	14141	14142	30998	30998					0.09025348913598918
LPFSPLVI	8	Unmodified	_LPFSPLVI_					0	0	0		nc|ENSG00000196843|Q03989-5|ARID5A;ENSG00000196843|ENST00000357485|ARID5A;ENST00000497920.1_1_2:97215573-97218047:+|nuORF	nc|ENSG00000196843|Q03989-5|ARID5A	nc|ENSG00000196843|Q03989-5|ARID5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.2760009765625	2	443.275847	884.537141	0.37797	0.00016754	-0.19179	-8.5017E-05	0.18618	8.2527E-05	443.27570547445697	87.078	1.8254	87.073	86.482	88.307	-0.0056229					229	86	5	0	0	0	0.2157	1	22935	22935		40.449	8.3316	1	7772600			24772	7905	14141	14142	30999	30999					0.09025348913598918
LPFSPLVI	8	Unmodified	_LPFSPLVI_					0	0	0		nc|ENSG00000196843|Q03989-5|ARID5A;ENSG00000196843|ENST00000357485|ARID5A;ENST00000497920.1_1_2:97215573-97218047:+|nuORF	nc|ENSG00000196843|Q03989-5|ARID5A	nc|ENSG00000196843|Q03989-5|ARID5A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	443.275847	884.537141	0.37797	0.00016754	-0.19179	-8.5017E-05	0.18618	8.2527E-05	443.27570547445697	87.078	1.8254	87.073	86.482	88.307	-0.0056229	-0.004603	-2.2509E-05	NaN	42.968	229	86	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7772600			24773	7905	14141	14142							0.09025348913598918
LPFSQPKV	8	Unmodified	_LPFSQPKV_					0	0	0		nc|ENSG00000213689|Q9NSU2-2|TREX1;ENSG00000213689|ENST00000625293|TREX1;nc|ENSG00000213689|Q9NSU2-1|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.26873779296875	2	458.268553	914.522553	0.27609	0.00012652	-0.061319	-2.8101E-05	0.21477	9.8421E-05	458.2685065165657	45.086	0.83673	45.154	44.791	45.628	0.068569					54	29	2	0	0	0	0.016169	1	10059	10059		107.19	52.413	1	1661600			24774	8360	14142	14143	31000	31000					0.06187276765467686
LPFSQPKV	8	Unmodified	_LPFSQPKV_					0	0	0		nc|ENSG00000213689|Q9NSU2-2|TREX1;ENSG00000213689|ENST00000625293|TREX1;nc|ENSG00000213689|Q9NSU2-1|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	nc|ENSG00000213689|Q9NSU2-2|TREX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.9345703125	2	458.268553	914.522553	0.28419	0.00013024	-0.14209	-6.5115E-05	0.1421	6.512E-05	458.2684941201475	45.093	0.82214	45.168	44.835	45.657	0.075047					56	30	2	0	0	0	0.15302	1	10015	10015		72.968	32.519	1	1985500			24775	8360	14142	14143	31001	31001					0.06187276765467686
LPFTIGFVF	9	Unmodified	_LPFTIGFVF_					0	0	0			REV__ENSG00000144746|ENST00000273258|ARL6IP5	REV__ENSG00000144746|ENST00000273258|ARL6IP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.794677734375	2	520.794404	1039.57425	0.53517	0.00027871	0.51889	0.00027024	1.0541	0.00054895	520.7945450681021	76.356	3.3211	76.325	75.184	78.505	-0.031487					196	122	3	0	0	0	0.30166	1	19765	19765		8.5933	0	1	1007500	+		24776	16259	14143	14144	31002	31002					0.056050204593930175
LPFTLLLYTF	10	Unmodified	_LPFTLLLYTF_					0	0	0		ENST00000261593.7_1_18:29709388-29709517:+|nuORF	ENST00000261593.7_1_18:29709388-29709517:+|nuORF	ENST00000261593.7_1_18:29709388-29709517:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2048645019531	3	409.905642	1226.6951	0.099435	4.0759E-05	-2.5321	-0.0010379	-2.4326	-0.00099714	409.9047129290993	37.723	0.62347	37.723	37.616	38.239	0					30	21	2	0	0	0	0.31473	1	7820	7820		9.544	0	1	109610			24777	8969	14144	14145	31003	31003					0.09081803382196085
LPFTPKNI	8	Unmodified	_LPFTPKNI_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2763977050781	2	465.276378	928.538203	0.01008	4.6902E-06	-1.6294	-0.00075811	-1.6193	-0.00075342	465.2762871439672	49.883	0.64307	49.883	49.434	50.077	0					53	23	3	0	0	0	0.056926	1	11515	11515		74.929	14.539	1	448030			24778	2020	14145	14146	31004	31004					0.07107563282522733
LPFTPKNI	8	Unmodified	_LPFTPKNI_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.27593994140625	2	465.276378	928.538203	0.077999	3.6291E-05	-2.0407	-0.00094948	-1.9627	-0.00091319	465.2763057218731	49.843	0.71037	49.888	49.425	50.136	0.044891					67	26	3	0	0	0	0.077335	1	11514	11514		65.235	14.38	1	468310			24779	2020	14145	14146	31005	31005					0.07107563282522733
LPFTPKNI	8	Unmodified	_LPFTPKNI_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.27630615234375	2	465.276378	928.538203	0.24679	0.00011482	-1.9158	-0.00089136	-1.669	-0.00077654	465.2762551725089	49.85	0.61504	49.871	49.537	50.152	0.020691					53	22	3	0	0	0	0.063256	1	11495	11495		71.922	14.451	1	491510			24780	2020	14145	14146	31006	31006					0.07107563282522733
LPFVLQEI	8	Unmodified	_LPFVLQEI_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7840881347656	2	479.784036	957.553519	0.41367	0.00019847	0.0075032	3.5999E-06	0.42118	0.00020207	479.7836766967415	84.685	0.63441	84.685	84.405	85.04	0					42	23	3	0	0	0	0.14707	1	22195	22195		52.268	16.224	1	388120			24781	2367	14146	14147	31007	31007					0.07304430079705071
LPFVLQEI	8	Unmodified	_LPFVLQEI_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.78387451171875	2	479.784036	957.553519	0.48476	0.00023258	-0.21837	-0.00010477	0.26638	0.00012781	479.7836054651287	84.576	0.5291	84.657	84.446	84.975	0.080887					37	20	3	0	0	0	0.1951	1	22170	22170		43.858	15.371	1	321850			24782	2367	14146	14147	31008	31008					0.07304430079705071
LPFVLQEI	8	Unmodified	_LPFVLQEI_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7837829589844	2	479.784036	957.553519	0.47519	0.00022799	0.071145	3.4134E-05	0.54633	0.00026212	479.78374695918876	84.702	0.649	84.689	84.328	84.977	-0.01284					47	25	3	0	0	0	0.22	1	22179	22179		39.957	11.47	1	299320			24783	2367	14146	14147	31009	31009					0.07304430079705071
LPFVSRGPLTV	11	Unmodified	_LPFVSRGPLTV_					0	0	0		nc|ENSG00000137337|Q14676-4|MDC1;nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.3644409179688	2	593.353148	1184.69174	0.62282	0.00036955	-0.87528	-0.00051935	-0.25246	-0.0001498	593.3523766789542	63.893	0.38425	63.893	63.695	64.079	0					27	13	3	0	0	0	0.073405	1	15812	15812		46.475	23.739	1	261860			24784	4042	14147	14148	31010	31010					0.10678553328170892
LPFVSRGPLTV	11	Unmodified	_LPFVSRGPLTV_					0	0	0		nc|ENSG00000137337|Q14676-4|MDC1;nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	593.353148	1184.69174	0.5784	0.00034319	-0.29228	-0.00017343	0.28612	0.00016977	593.8546429226232	63.779	0.32882	63.874	63.713	64.041	0.094414	-0.014161	0.00022282	NaN	46.475	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188820			24785	4042	14147	14148							0.10678553328170892
LPFYFVQKI	9	Unmodified	_LPFYFVQKI_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.8341064453125	2	577.83406	1153.65357	0.28106	0.00016241	-0.25468	-0.00014716	0.026387	1.5247E-05	577.8338828711036	71.119	1.3945	71.119	70.847	72.241	0					119	49	4	0	0	0	2.4571E-07	2	18037	18037;18089		170.55	114.01	1	2800800			24786	741	14148	14149	31011;31012	31011					0.08288667413535222
LPFYFVQKI	9	Unmodified	_LPFYFVQKI_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.8342895507812	2	577.83406	1153.65357	0.32236	0.00018627	-0.35342	-0.00020422	-0.031057	-1.7946E-05	577.8339033779023	71.12	1.3731	71.181	70.855	72.228	0.060783					108	49	3	0	0	0	1.576E-05	2	18022	18022;18072		154.46	100.89	1	3990800			24787	741	14148	14149	31013;31014	31013					0.08288667413535222
LPFYFVQKI	9	Unmodified	_LPFYFVQKI_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.8340454101562	2	577.83406	1153.65357	0.35929	0.00020761	-0.12744	-7.364E-05	0.23185	0.00013397	577.8339374611959	71.241	1.4278	71.216	70.856	72.284	-0.024872					111	51	4	0	0	0	1.576E-05	2	18041	18041;18091		154.46	94.39	1	3834400			24788	741	14148	14149	31015;31016	31015					0.08288667413535222
LPFYGVPGV	9	Unmodified	_LPFYGVPGV_					0	0	0		ENSG00000221968|ENST00000278829|FADS3	ENSG00000221968|ENST00000278829|FADS3	ENSG00000221968|ENST00000278829|FADS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7632751464844	2	474.763104	947.511654	-0.024619	-1.1688E-05	0.086416	4.1027E-05	0.061796	2.9339E-05	474.7629877435732	76.225	0.65941	76.225	75.957	76.617	0					43	23	3	0	0	0	0.069231	1	19630	19630		45.75	24.879	1	358910			24789	8430	14149	14150	31017	31017					0.035798743911982456
LPFYGVPGV	9	Unmodified	_LPFYGVPGV_					0	0	0		ENSG00000221968|ENST00000278829|FADS3	ENSG00000221968|ENST00000278829|FADS3	ENSG00000221968|ENST00000278829|FADS3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.763671875	2	474.763104	947.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.273	1	76.241	75.741	76.741	-0.031487								0	0	0	0.17818	1	19622	19622		28.173	10.027	1				24790	8430	14149	14150	31018	31018					0.035798743911982456
LPFYKQLL	8	Unmodified	_LPFYKQLL_					0	0	0		ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000108854|ENST00000262435|SMURF2	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.26226806640625	2	511.307678	1020.6008	0.30313	0.00015499	1.3905	0.00071097	1.6936	0.00086596	511.3079532389446	70.561	0.5591	70.536	70.214	70.773	-0.024872					41	19	3	0	0	0	0.29855	1	17845	17845		24.674	0	1	408510			24791	2223	14150	14151	31019	31019					0.09132709350717505
LPFYNMLC	8	Carbamidomethyl (C),Oxidation (M)	_LPFYNM(Oxidation (M))LC(Carbamidomethyl (C))_	LPFYNMLC(1)	LPFYNM(1)LC	LPFYNMLC(43)	LPFYNM(43)LC	0	1	1			REV__ENST00000471788.1_1_2:207651391-207655428:+|nuORF	REV__ENST00000471788.1_1_2:207651391-207655428:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2435302734375	2	537.243363	1072.47217	0.65292	0.00035078	-0.54902	-0.00029496	0.10391	5.5822E-05	537.2431743700373	65.709	0.51309	65.698	65.348	65.861	-0.011337					32	18	2	0	0	0	0.20019	1	16397	16397		42.968	8.7807	1	849470	+		24792	15004	14151	14152	31020	31020	23	994			-0.06116336946206502
LPFYYFLI	8	Unmodified	_LPFYYFLI_					0	0	0			REV__ENST00000452825.7_2_X:53221315-53221459:-|nuORF	REV__ENST00000452825.7_2_X:53221315-53221459:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.758056640625	2	538.296779	1074.57901	0.47329	0.00025477	-3.743	-0.0020148	-3.2697	-0.0017601	538.2946253983702	87.359	0.24673	87.446	87.329	87.576	0.08709					19	11	2	0	0	0	0.33618	1	22989	22989		17.087	2.5049	1	122030	+		24793	21130	14152	14153	31021	31021					0.04469904602137831
LPGAASDILT	10	Unmodified	_LPGAASDILT_					0	0	0		ENST00000528499.5_1_11:130013375-130013492:+|nuORF	ENST00000528499.5_1_11:130013375-130013492:+|nuORF	ENST00000528499.5_1_11:130013375-130013492:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.25531005859375	2	479.266207	956.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.665	1	95.661	95.161	96.161	-0.0038147								0	0	0	0.34994	1	25560	25560		14.838	0	1				24794	11584	14153	14154	31022	31022					0.03786347832055981
LPGAFSPII	9	Unmodified	_LPGAFSPII_					0	0	0			REV__ENST00000558970.2_1_15:50606818-50647294:-|nuORF	REV__ENST00000558970.2_1_15:50606818-50647294:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.304931640625	2	457.770929	913.527304	0.14345	6.5668E-05	0.64574	0.0002956	0.78919	0.00036127	457.7710261676378	76.049	0.48754	76.017	75.803	76.29	-0.031479					29	17	2	0	0	0	0.18943	1	19516	19516		30.225	1.738	1	253550	+		24795	22284	14154	14155	31023	31023					0.06708160908249283
LPGALSSNAI	10	Unmodified	_LPGALSSNAI_					0	0	0		ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	ENSG00000213465|ENST00000246747|ARL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.7663269042969	2	471.766374	941.518196	0.1327	6.2603E-05	-0.35435	-0.00016717	-0.22165	-0.00010457	471.76613165576674	67.618	0.5795	67.601	67.292	67.871	-0.016296					33	19	2	0	0	0	0.1715	2	17017	17017;17050		36.127	8.4982	1	317600			24796	8346	14155	14156	31024;31025	31024					0.04509767551905952
LPGAVHFLPL	10	Unmodified	_LPGAVHFLPL_					0	0	0		nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP;nc|ENSG00000164053|Q8WXE1-5|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP	nc|ENSG00000164053|Q8WXE1-2|ATRIP	nc|ENSG00000164053|Q8WXE1-2|ATRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8173828125	2	532.318577	1062.6226	0.38766	0.00020636	0.41827	0.00022265	0.80593	0.00042901	532.3187435635898	75.433	0.89172	75.485	75.051	75.943	0.052361					89	30	5	0	0	0	0.26524	1	19437	19437		24.674	11.166	1	1632500			24797	5775	14156	14157	31026	31026					0.0937951409928246
LPGAVHFLPL	10	Unmodified	_LPGAVHFLPL_					0	0	0		nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP;nc|ENSG00000164053|Q8WXE1-5|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP	nc|ENSG00000164053|Q8WXE1-2|ATRIP	nc|ENSG00000164053|Q8WXE1-2|ATRIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.295654296875	2	532.318577	1062.6226	0.26	0.0001384	0.18489	9.8423E-05	0.44489	0.00023682	532.3186863448157	76.124	0.32703	76.178	75.862	76.189	0.053413					19	11	2	0	0	0	0.30586	1	19508	19508		7.9102	0	1	955680			24798	5775	14156	14157	31027	31027					0.0937951409928246
LPGCRWEMWL	10	Unmodified	_LPGCRWEMWL_					0	0	0			REV__ENST00000339526.8_1_1:182360314-182360662:-|nuORF	REV__ENST00000339526.8_1_1:182360314-182360662:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.88812255859375	3	430.875583	1289.60492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.781	1	30.809	30.309	31.309	0.027946								0	0	0	0.3749	1	5675	5675		2.086	0	1		+		24799	20098	14157	14158	31028	31028					-0.028298924895580058
LPGEEDRLA	9	Unmodified	_LPGEEDRLA_					0	0	0			REV__nc|ENSG00000181625|Q9BQ83-2|SLX1A	REV__nc|ENSG00000181625|Q9BQ83-2|SLX1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.77923583984375	2	500.258914	998.503274	-0.25771	-0.00012892	0.37323	0.00018671	0.11552	5.7789E-05	500.25902151480443	35.264	0.54161	35.264	35.033	35.575	0					32	19	3	0	0	0	0.24848	1	7022	7022		13.906	0	1	195720	+		24800	22310	14158	14159	31029	31029					0.0039627568389732915
LPGGGRVLQAA	11	Unmodified	_LPGGGRVLQAA_					0	0	0		ENST00000533614.5_1_1:249151936-249153183:-|nuORF;ENST00000496411.5_1_1:249152123-249153213:-|nuORF;ENST00000483791.6_1_1:249152025-249153300:-|nuORF;ENST00000470787.6_1_1:249150751-249153213:-|nuORF;ENST00000412341.6_1_1:249150017-249153213:-|nuORF	ENST00000533614.5_1_1:249151936-249153183:-|nuORF	ENST00000533614.5_1_1:249151936-249153183:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7950439453125	2	519.806365	1037.59818	0.27146	0.00014111	-0.19251	-0.00010007	0.078949	4.1038E-05	519.8060916249631	31.136	0.66571	31.136	30.81	31.476	0					64	23	3	0	0	0	0.37255	1	5872	5872		14.838	2.3067	1	675430			24801	10276	14159	14160	31030	31030					0.08088253945743418
LPGGGRVLQAA	11	Unmodified	_LPGGGRVLQAA_					0	0	0		ENST00000533614.5_1_1:249151936-249153183:-|nuORF;ENST00000496411.5_1_1:249152123-249153213:-|nuORF;ENST00000483791.6_1_1:249152025-249153300:-|nuORF;ENST00000470787.6_1_1:249150751-249153213:-|nuORF;ENST00000412341.6_1_1:249150017-249153213:-|nuORF	ENST00000533614.5_1_1:249151936-249153183:-|nuORF	ENST00000533614.5_1_1:249151936-249153183:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2685546875	2	519.806365	1037.59818	-0.070423	-3.6606E-05	0.022438	1.1663E-05	-0.047986	-2.4943E-05	519.806345884083	25.209	0.80603	25.177	24.709	25.515	-0.031408					52	27	3	0	0	0	0.32951	1	3935	3935		8.7454	2.0222	1	142200			24802	10276	14159	14160	31031	31031					0.08088253945743418
LPGHGKNGL	9	Unmodified	_LPGHGKNGL_					0	0	0		nc|ENSG00000163995|Q6H8Q1-4|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2	nc|ENSG00000163995|Q6H8Q1-4|ABLIM2	nc|ENSG00000163995|Q6H8Q1-4|ABLIM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.2439270019531	2	446.753601	891.49265	0.32782	0.00014646	3.7908	0.0016936	4.1187	0.00184	446.75408061249465	62.283	0.55753	62.275	62.118	62.675	-0.0085526					29	20	2	0	0	0	0.24913	1	15324	15324		7.9102	1.5561	1	102490			24803	5768	14160	14161	31032	31032					0.042563378201293744
LPGIPWILCL	10	Unmodified	_LPGIPWILCL_					0	0	0		ENST00000296582.7_1_4:148555603-148555699:+|nuORF	ENST00000296582.7_1_4:148555603-148555699:+|nuORF	ENST00000296582.7_1_4:148555603-148555699:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8008422851562	2	562.830463	1123.64637	0.093865	5.283E-05	-0.22676	-0.00012763	-0.1329	-7.4798E-05	562.8300494383398	25.914	0.46389	25.892	25.579	26.043	-0.022236					25	16	2	0	0	0	0.31745	1	4174	4174		7.9102	1.2798	1	156040			24804	9189	14161	14162	31033	31033					0.08949611541424929
LPGIRDLSL	9	Unmodified	_LPGIRDLSL_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000531486.1_1_17:45681241-45696545:+|nuORF;ENST00000530514.5_1_17:45668242-45699283:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2815856933594	2	492.297842	982.581131	0.8205	0.00040393	-1.1189	-0.00055082	-0.29838	-0.00014689	492.2974648480389	55.971	0.98092	56.042	55.473	56.454	0.070885					69	35	3	0	0	0	0.1335	1	13347	13347		27.223	0.95509	1	2022000			24805	4363	14162	14163	31034	31034					0.08914333339953373
LPGIRDLSL	9	Unmodified	_LPGIRDLSL_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000531486.1_1_17:45681241-45696545:+|nuORF;ENST00000530514.5_1_17:45668242-45699283:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2980041503906	2	492.297842	982.581131	0.83871	0.0004129	-0.83502	-0.00041108	0.003691	1.8171E-06	492.29762071309244	56.065	0.8446	56.046	55.508	56.352	-0.019077					64	30	3	0	0	0	0.15943	1	13454	13454		26.268	3.5319	1	1699800			24806	4363	14162	14163	31035	31035					0.08914333339953373
LPGLIHSPLI	10	Unmodified	_LPGLIHSPLI_					0	0	0		ENST00000413704.5_1_3:9487316-9517772:+|nuORF;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;ENSG00000168137|ENST00000402198|SETD5;ENST00000443339.5_1_3:9475802-9506425:+|nuORF	ENST00000413704.5_1_3:9487316-9517772:+|nuORF	ENST00000413704.5_1_3:9487316-9517772:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3316650390625	2	530.331685	1058.64882	0.47279	0.00025073	0.16354	8.6731E-05	0.63633	0.00033747	530.3318200976223	73.486	1.0797	73.457	72.954	74.033	-0.029305					91	38	4	0	0	0	0.12286	1	18774	18774		64.236	0.2758	1	1265200			24807	6249	14163	14164	31036	31036					0.12183783270756976
LPGMDPPEAF	10	Unmodified	_LPGMDPPEAF_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.25341796875	2	537.252243	1072.48993	0.64255	0.00034521	-0.7908	-0.00042486	-0.14824	-7.9644E-05	537.2517770259074	65.803	0.90131	65.892	65.704	66.605	0.088882					88	32	4	0	0	0	0.21644	1	16419	16419		30.637	0.41173	1	1950700			24808	7418	14164	14165	31037	31037					-0.04341298419717532
LPGPHLPLI	9	Unmodified	_LPGPHLPLI_					0	0	0		ENST00000592172.5_1_19:6026246-6110452:-|nuORF	ENST00000592172.5_1_19:6026246-6110452:-|nuORF	ENST00000592172.5_1_19:6026246-6110452:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.8002014160156	2	478.80002	955.585488	0.41822	0.00020024	-0.04546	-2.1766E-05	0.37276	0.00017848	478.80002996332604	64.197	0.62398	64.197	63.915	64.539	0					41	22	2	0	0	0	0.069231	1	15933	15933		45.75	5.7927	1	618080			24809	12193	14165	14166	31038	31038					0.10591842553537845
LPGPILQSI	9	Unmodified	_LPGPILQSI_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41;chr1:46298370-46331825|427|55.02|0.1|9.13|-|2|TE_info:Harlequin-int,Harlequin-int_dup21,ERV1,LTR,donor,-,46331825,46332068|LRRC41,None|7;ENST00000469150.1_1_1:46763228-46764055:-|nuORF	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2890930175781	2	469.289485	936.564418	0.11062	5.1913E-05	0.023067	1.0825E-05	0.13369	6.2738E-05	469.28935608615456	71.781	0.74997	71.781	71.491	72.241	0					57	26	3	0	0	0	0.088391	1	18215	18215		39.957	7.6518	1	819620			24810	3610	14166	14167	31039	31039					0.09359832453992567
LPGPILQSI	9	Unmodified	_LPGPILQSI_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41;chr1:46298370-46331825|427|55.02|0.1|9.13|-|2|TE_info:Harlequin-int,Harlequin-int_dup21,ERV1,LTR,donor,-,46331825,46332068|LRRC41,None|7;ENST00000469150.1_1_1:46763228-46764055:-|nuORF	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.2891540527344	2	469.289485	936.564418	0.14534	6.8206E-05	-0.037832	-1.7754E-05	0.10751	5.0452E-05	469.2892779850048	71.702	1.0799	71.759	71.144	72.224	0.056572					78	38	3	0	0	0	0.017871	2	18259	18211;18259		67.344	18.998	1	890480			24811	3610	14166	14167	31040;31041	31041					0.09359832453992567
LPGPILQSI	9	Unmodified	_LPGPILQSI_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41;chr1:46298370-46331825|427|55.02|0.1|9.13|-|2|TE_info:Harlequin-int,Harlequin-int_dup21,ERV1,LTR,donor,-,46331825,46332068|LRRC41,None|7;ENST00000469150.1_1_1:46763228-46764055:-|nuORF	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.2890625	2	469.289485	936.564418	0.30711	0.00014413	-0.37634	-0.00017661	-0.069223	-3.2485E-05	469.28917978961215	71.832	1.1783	71.804	71.128	72.306	-0.027275					77	42	3	0	0	0	0.017871	1	18231	18231		67.344	18.998	1	922160			24812	3610	14166	14167	31042	31042					0.09359832453992567
LPGPKQVQA	9	Unmodified	_LPGPKQVQA_					0	0	0			REV__nc|ENSG00000117090|Q13291-3|SLAMF1	REV__nc|ENSG00000117090|Q13291-3|SLAMF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.9712219238281	2	469.276909	936.539266	0.20827	9.7735E-05	-0.49188	-0.00023083	-0.28361	-0.00013309	469.27669907752266	43.303	0.16872	43.387	43.241	43.41	0.083996					7	5	2	0	0	0	0.24913	1	9492	9492		7.9102	0	1	85931	+		24813	14953	14167	14168	31043	31043					0.06845777651415119
LPGPSIPAV	9	Unmodified	_LPGPSIPAV_					0	0	0			REV__MAP2|p.M809Nfs*19|1|0.11|ENSG00000078018|chr2:209694592-209694593|-/A|frameshift_variant	REV__MAP2|p.M809Nfs*19|1|0.11|ENSG00000078018|chr2:209694592-209694593|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.2632751464844	2	425.755278	849.496004	0.30041	0.0001279	-0.2949	-0.00012555	0.0055146	2.3479E-06	425.7551515868718	58.579	0.85032	58.565	57.956	58.806	-0.014267					50	30	2	0	0	0	0.24913	1	14252	14252		12.532	0	1	281730	+		24814	13848	14168	14169	31044	31044					0.06523587874130499
LPGPYIALRS	10	Unmodified	_LPGPYIALRS_					0	0	0		ENSG00000248483|ENST00000606183|POU5F2	ENSG00000248483|ENST00000606183|POU5F2	ENSG00000248483|ENST00000606183|POU5F2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.782958984375	2	543.818941	1085.62333	0.62009	0.00033722	-1.9013	-0.001034	-1.2812	-0.00069673	544.3187053328272	44.25	0.24452	44.325	44.257	44.502	0.075047					11	8	2	0	0	0	0.3156	1	9827	9827		10.824	0	1	81508			24815	8581	14169	14170	31045	31045					0.08394308748302137
LPGQLVDI	8	Unmodified	_LPGQLVDI_					0	0	0		ENSG00000138892|ENST00000433387|TTLL8;nc|ENSG00000138892|A6PVC2-2|TTLL8;nc|ENSG00000138892|A6PVC2|TTLL8	ENSG00000138892|ENST00000433387|TTLL8	ENSG00000138892|ENST00000433387|TTLL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.7525634765625	2	427.752736	853.490919	-0.035399	-1.5142E-05	-0.26571	-0.00011366	-0.30111	-0.0001288	427.75249179457063	58.673	0.90467	58.764	58.53	59.434	0.091305					74	31	3	0	0	0	0.3671	1	14360	14360		23.148	0	1	450320			24816	4203	14170	14171	31046	31046					0.058312840115036124
LPGQPQTPVF	10	Unmodified	_LPGQPQTPVF_					0	0	0		nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.75146484375	2	542.295299	1082.57605	0.20064	0.00010881	-0.54037	-0.00029304	-0.33974	-0.00018424	542.2962147526794	60.221	0.28744	60.221	60.126	60.413	0					14	10	2	0	0	0	0.31039	1	14767	14767		13.042	0	1	184100			24817	4260	14171	14172	31047	31047					0.038060294773458736
LPGRQGRRAL	10	Unmodified	_LPGRQGRRAL_					0	0	0		ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.8178100585938	2	562.343981	1122.67341	0.37261	0.00020954	-1.5393	-0.00086564	-1.1667	-0.0006561	562.3429316454905	93.885	0.59686	93.885	93.663	94.26	-0.00051117					53	40	2	0	0	0	0.3198	1	25078	25078		4.3292	0.38484	1	112290			24818	7209	14172	14173	31048	31048					0.11697856196838075
LPGRQGRRAL	10	Unmodified	_LPGRQGRRAL_					0	0	0		ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	562.343981	1122.67341	0.14641	8.2333E-05	-1.173	-0.00065965	-1.0266	-0.00057732	562.3431860507733	93.903	0.3045	93.903	93.755	94.06	0	-0.048968	0.00014077	NaN	4.3292	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39362			24819	7209	14172	14173							0.11697856196838075
LPGRQGRRAL	10	Unmodified	_LPGRQGRRAL_					0	0	0		ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	562.343981	1122.67341	0.29728	0.00016717	-1.1344	-0.00063791	-0.8371	-0.00047074	562.3431694588754	93.982	0.23715	94.068	93.89	94.127	0.08667	0.11634	0.00018424	NaN	4.3292	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112250			24820	7209	14172	14173							0.11697856196838075
LPHAPGVQM	9	Oxidation (M)	_LPHAPGVQM(Oxidation (M))_		LPHAPGVQM(1)		LPHAPGVQM(89)	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2474670410156	2	483.247295	964.480036	0.36194	0.00017491	0.20411	9.8635E-05	0.56605	0.00027354	483.2473351985097	32.708	1.1935	32.708	32.091	33.285	0					96	42	3	0	0	0	0.0046213	2	6226	6226;6274		89.427	59.202	1	961460			24821	7884;2727	14173	14174	31049;31050	31049		345			-0.0036244163439960175
LPHAPGVQM	9	Oxidation (M)	_LPHAPGVQM(Oxidation (M))_		LPHAPGVQM(1)		LPHAPGVQM(94)	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2477111816406	2	483.247295	964.480036	0.42093	0.00020341	0.23236	0.00011229	0.6533	0.0003157	483.2473419657702	32.557	1.1577	32.613	32.097	33.255	0.055309					81	41	3	0	0	0	0.0040585	2	6185	6185;6234		93.883	51.789	1	1070800			24822	7884;2727	14173	14174	31051;31052	31051		345			-0.0036244163439960175
LPHAPGVQM	9	Oxidation (M)	_LPHAPGVQM(Oxidation (M))_		LPHAPGVQM(1)		LPHAPGVQM(120)	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2474365234375	2	483.247295	964.480036	0.30073	0.00014533	0.30872	0.00014919	0.60945	0.00029452	483.247402935008	32.582	1.1306	32.636	32.072	33.203	0.054375					86	40	3	0	0	0	0.0014051	2	6208	6163;6208		117.6	75.504	1	943960			24823	7884;2727	14173	14174	31053;31054	31054		345			-0.0036244163439960175
LPHARLKD	8	Unmodified	_LPHARLKD_					0	0	0			REV__ENSG00000185974|ENST00000335678|GRK1	REV__ENSG00000185974|ENST00000335678|GRK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.282470703125	2	475.282526	948.550499	0.0667	3.1701E-05	-0.019337	-9.1906E-06	0.047363	2.2511E-05	475.28235009156884	27.284	0.48669	27.262	27.041	27.528	-0.02141					42	16	3	0	0	0	0.43043	1	4609	4609		12.532	0	1	398960	+		24824	18426	14174	14175	31055	31055					0.07416599745556596
LPHEDGDIL	9	Unmodified	_LPHEDGDIL_					0	0	0		ENST00000574380.5_1_16:3508085-3533604:+|nuORF;ENST00000570551.5_1_16:3508085-3534852:+|nuORF	ENST00000574380.5_1_16:3508085-3533604:+|nuORF	ENST00000574380.5_1_16:3508085-3533604:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.3119201660156	2	504.753464	1007.49238	0.87029	0.00043928	-0.70616	-0.00035644	0.16413	8.2844E-05	504.7531043159109	56.257	0.53563	56.257	55.992	56.528	0					45	19	3	0	0	0	0.25066	1	13426	13426		7.2892	0	1	2574500			24825	12024	14175	14176	31056	31056					-0.011071266903741162
LPHFGALLLT	10	Unmodified	_LPHFGALLLT_					0	0	0			REV__ENST00000598802.1_1_19:50545003-50545258:+|nuORF	REV__ENST00000598802.1_1_19:50545003-50545258:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.3054809570312	2	541.32386	1080.63317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.637	1	73.689	73.189	74.189	0.052361								0	0	0	0.35542	1	18822	18822		12.532	1.7076	1		+		24826	22621	14176	14177	31057	31057					0.0960749675371062
LPHGAWLS	8	Unmodified	_LPHGAWLS_					0	0	0		ENST00000267113.4_1_12:56531027-56531078:+|nuORF	ENST00000267113.4_1_12:56531027-56531078:+|nuORF	ENST00000267113.4_1_12:56531027-56531078:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.75006103515625	2	440.73742	879.460287	0.1301	5.7339E-05	-0.7904	-0.00034836	-0.66031	-0.00029102	440.7373846257964	52.175	0.61922	52.226	51.846	52.465	0.050575					49	22	3	0	0	0	0.43727	1	12270	12270		10.183	0.83596	1	383900			24827	9061	14177	14178	31058	31058					0.015735504171288994
LPHGAWLS	8	Unmodified	_LPHGAWLS_					0	0	0		ENST00000267113.4_1_12:56531027-56531078:+|nuORF	ENST00000267113.4_1_12:56531027-56531078:+|nuORF	ENST00000267113.4_1_12:56531027-56531078:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.75018310546875	2	440.73742	879.460287	-0.0054817	-2.416E-06	-0.1221	-5.3814E-05	-0.12758	-5.623E-05	440.7373858339533	52.396	0.59424	52.396	51.954	52.548	-0.00080872					51	21	3	0	0	0	0.43727	1	12304	12304		10.183	0.83596	1	346820			24828	9061	14177	14178	31059	31059					0.015735504171288994
LPHHRAFG	8	Unmodified	_LPHHRAFG_					0	0	0			REV__ENST00000491730.5_1_3:113251655-113300327:+|nuORF	REV__ENST00000491730.5_1_3:113251655-113300327:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7532043457031	2	467.753936	933.493319	0.041936	1.9616E-05	-1.2234	-0.00057223	-1.1814	-0.00055262	467.7531679951683	49.099	0.78784	49.144	48.989	49.776	0.044891					41	28	2	0	0	0	0.42446	1	11309	11309		14.582	2.0501	1	354270	+		24829	21617	14178	14179	31060	31060					0.023911772598466996
LPHHRAFG	8	Unmodified	_LPHHRAFG_					0	0	0			REV__ENST00000491730.5_1_3:113251655-113300327:+|nuORF	REV__ENST00000491730.5_1_3:113251655-113300327:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.75347900390625	2	467.753936	933.493319	0.048811	2.2831E-05	-1.3001	-0.00060812	-1.2513	-0.00058529	467.7531825425869	49.052	0.80271	49.084	48.878	49.681	0.032043					46	28	3	0	0	0	0.42446	1	11285	11285		14.582	1.0738	1	328980	+		24830	21617	14178	14179	31061	31061					0.023911772598466996
LPHHRVIEV	9	Unmodified	_LPHHRVIEV_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000572932.1_1_16:16374097-16382502:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.322509765625	2	550.322183	1098.62981	0.28329	0.0001559	0.0035634	1.961E-06	0.28686	0.00015786	550.3223421524976	26.486	1.6302	26.486	26.133	27.763	0					184	56	5	0	0	0	1.2283E-05	6	4358	4312;4358;4403;4446;4491;4544		155.03	155.03	1	7689400			24831	1820	14179	14180	31062;31063;31064;31065;31066;31067	31063					0.08444246699696123
LPHHRVIEV	9	Unmodified	_LPHHRVIEV_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000572932.1_1_16:16374097-16382502:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3226318359375	2	550.322183	1098.62981	0.36289	0.00019971	-0.10087	-5.5511E-05	0.26202	0.0001442	550.3222913070314	26.496	1.524	26.457	26.1	27.624	-0.03867					177	53	5	0	0	0	0.00045155	6	4406	4318;4362;4406;4449;4498;4546		129.77	129.77	1	7940500			24832	1820	14179	14180	31068;31069;31070;31071;31072;31073	31070					0.08444246699696123
LPHHRVIEV	9	Unmodified	_LPHHRVIEV_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000572932.1_1_16:16374097-16382502:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3225708007812	2	550.322183	1098.62981	0.55017	0.00030277	-0.25205	-0.00013871	0.29812	0.00016406	550.3221649148609	26.536	1.8436	26.513	26.185	28.029	-0.022238					186	64	5	0	0	0	9.2305E-05	6	4383	4336;4383;4425;4466;4510;4573		142.08	142.08	1	7939000			24833	1820	14179	14180	31074;31075;31076;31077;31078;31079	31075					0.08444246699696123
LPHKNITSI	9	Unmodified	_LPHKNITSI_					0	0	0		ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.8035583496094	2	511.803291	1021.59203	0.31923	0.00016338	0.45101	0.00023083	0.77023	0.00039421	511.80331291365786	28.868	0.54109	28.868	28.548	29.089	0					39	18	3	0	0	0	0.24924	1	5069	5069		14.405	2.9107	1	242240			24834	3476	14180	14181	31080	31080					0.08209735714228827
LPHKNITSI	9	Unmodified	_LPHKNITSI_					0	0	0		ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.80364990234375	2	511.803291	1021.59203	0.19648	0.00010056	0.49376	0.00025271	0.69024	0.00035327	511.8033059056493	28.761	0.59851	28.757	28.495	29.093	-0.0042572					31	20	2	0	0	0	0.18378	1	5062	5062		26.021	4.4837	1	247180			24835	3476	14180	14181	31081	31081					0.08209735714228827
LPHKNITSI	9	Unmodified	_LPHKNITSI_					0	0	0		ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.8034973144531	2	511.803291	1021.59203	0.050797	2.5998E-05	0.72091	0.00036897	0.77171	0.00039496	511.80352762608186	28.827	0.65656	28.827	28.496	29.153	0.0004673					39	23	2	0	0	0	0.07944	1	5069	5069		41.956	7.5538	1	297510			24836	3476	14180	14181	31082	31082					0.08209735714228827
LPHLESLV	8	Unmodified	_LPHLESLV_					0	0	0			REV__nc|ENSG00000138286|Q96BN6-2|FAM149B1	REV__nc|ENSG00000138286|Q96BN6-2|FAM149B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.5988464355469	2	454.26601	906.517468	0.30965	0.00014066	0.0036505	1.6583E-06	0.3133	0.00014232	454.2659162067379	44.742	0.41167	44.811	44.567	44.979	0.068569					27	14	2	0	0	0	0.31934	1	9877	9877		24.674	0	1	250930	+		24837	15916	14181	14182	31083	31083					0.060469729028682195
LPHLIPLSI	9	Unmodified	_LPHLIPLSI_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202275976-202276645:-|nuORF	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.29217529296875	2	501.820953	1001.62735	0.64997	0.00032617	-0.32996	-0.00016558	0.32002	0.00016059	501.8206382545597	74.502	0.9061	74.502	74.191	75.097	0					69	31	3	0	0	0	0.031932	1	19112	19112		53.576	15.424	1	884930			24838	3934	14182	14183	31084	31084					0.1266039824205336
LPHLIPLSI	9	Unmodified	_LPHLIPLSI_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202275976-202276645:-|nuORF	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.8211669921875	2	501.820953	1001.62735	0.31866	0.00015991	-0.10313	-5.175E-05	0.21553	0.00010816	501.82076342415496	74.448	0.98213	74.5	74.236	75.218	0.052368					75	34	3	0	0	0	0.021303	1	19132	19132		63.563	16.642	1	930330			24839	3934	14182	14183	31085	31085					0.1266039824205336
LPHLIPLSI	9	Unmodified	_LPHLIPLSI_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202275976-202276645:-|nuORF	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2909851074219	2	501.820953	1001.62735	0.52664	0.00026428	-0.25205	-0.00012648	0.2746	0.0001378	501.8207260776797	74.586	0.87384	74.555	74.211	75.084	-0.030663					54	30	2	0	0	0	0.15464	1	19123	19123		30.225	5.5509	1	869370			24840	3934	14182	14183	31086	31086					0.1266039824205336
LPHLLPLL	8	Unmodified	_LPHLLPLL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000393860.7_1_17:40283628-40283751:-|nuORF	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.3049621582031	2	458.304939	914.595324	-0.11785	-5.4009E-05	0.15408	7.0618E-05	0.036239	1.6608E-05	458.3049455739897	75.601	1.1845	75.601	75.154	76.338	0					125	42	4	0	0	0	0.015002	4	19399	19399;19443;19487;19542		108.76	0	1	5756200			24841	1995	14183	14184	31087;31088;31089;31090	31087					0.1346103055890353
LPHLLPLL	8	Unmodified	_LPHLLPLL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000393860.7_1_17:40283628-40283751:-|nuORF	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.30487060546875	2	458.304939	914.595324	0.11248	5.1552E-05	-0.060017	-2.7506E-05	0.052467	2.4046E-05	458.3048376058803	75.579	1.2118	75.631	75.076	76.288	0.052361					126	43	5	0	0	0	0.015002	4	19385	19341;19385;19433;19484		108.76	0	1	6472300			24842	1995	14183	14184	31091;31092;31093;31094	31092					0.1346103055890353
LPHLLPLL	8	Unmodified	_LPHLLPLL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;ENST00000393860.7_1_17:40283628-40283751:-|nuORF	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.3048400878906	2	458.304939	914.595324	0.22041	0.00010101	-0.10824	-4.9606E-05	0.11217	5.1407E-05	458.3048100687731	75.692	1.2384	75.66	75.184	76.422	-0.031479					125	45	4	0	0	0	0.015002	2	19420	19420;19469		108.76	0	1	4691100			24843	1995	14183	14184	31095;31096	31095					0.1346103055890353
LPHLLPLLKGL	11	Unmodified	_LPHLLPLLKGL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2602233886719	3	405.272548	1212.79581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.61	1	70.585	70.085	71.085	-0.024872								0	0	0	0.37347	1	17891	17891		3.0723	0.98626	1				24844	1995	14184	14185	31097	31097					0.1979288015570546
LPHLPSLEI	9	Unmodified	_LPHLPSLEI_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.80029296875	2	509.800217	1017.58588	0.33624	0.00017142	-0.33842	-0.00017252	-0.0021743	-1.1084E-06	509.8000748405194	68.993	1.5391	68.993	68.381	69.92	0					172	55	5	0	0	0	0.00010798	6	17389	17304;17347;17389;17440;17490;17547		139.54	65.121	1	7290400			24845	1337	14185	14186	31098;31099;31100;31101;31102;31103	31100					0.07779217482709555
LPHLPSLEI	9	Unmodified	_LPHLPSLEI_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8004150390625	2	509.800217	1017.58588	0.35303	0.00017997	-0.33518	-0.00017088	0.017849	9.0996E-06	509.8000765940825	68.948	1.8957	69.02	68.383	70.279	0.071938					208	68	5	0	0	0	0.00010798	6	17398	17263;17312;17355;17398;17440;17482		139.54	65.121	1	7400700			24846	1337	14185	14186	31104;31105;31106;31107;31108;31109	31107					0.07779217482709555
LPHLPSLEI	9	Unmodified	_LPHLPSLEI_					0	0	0		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8003845214844	2	509.800217	1017.58588	0.24997	0.00012744	-0.21017	-0.00010714	0.039805	2.0293E-05	509.8001243022917	69.052	2.1562	69.032	68.315	70.471	-0.019157					197	77	5	0	0	0	0.00010798	6	17397	17307;17347;17397;17441;17487;17542		139.54	65.121	1	6861100			24847	1337	14185	14186	31110;31111;31112;31113;31114;31115	31112					0.07779217482709555
LPHLVVSI	8	Unmodified	_LPHLVVSI_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.2787780761719	2	439.278921	876.543289	-0.038893	-1.7085E-05	0.09159	4.0234E-05	0.052697	2.3149E-05	439.278802576377	61.807	0.64738	61.807	61.437	62.084	0					50	23	3	0	0	0	0.022392	1	15199	15199		98.807	20.362	1	644870			24848	2868	14186	14187	31116	31116					0.1000786714514561
LPHLVVSI	8	Unmodified	_LPHLVVSI_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.2786560058594	2	439.278921	876.543289	-0.35174	-0.00015451	0.40286	0.00017697	0.051126	2.2458E-05	439.27893624993055	61.692	0.66497	61.789	61.455	62.12	0.096985					51	23	3	0	0	0	0.026049	1	15170	15170		93.883	19.487	1	670170			24849	2868	14186	14187	31117	31117					0.1000786714514561
LPHLVVSI	8	Unmodified	_LPHLVVSI_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.27874755859375	2	439.278921	876.543289	-0.24728	-0.00010862	0.18749	8.2361E-05	-0.059784	-2.6262E-05	439.2788512153006	61.722	0.66238	61.713	61.377	62.04	-0.0085526					49	23	3	0	0	0	0.049524	1	15187	15187		78.445	18.65	1	715430			24850	2868	14186	14187	31118	31118					0.1000786714514561
LPHLVVSII	9	Unmodified	_LPHLVVSII_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.8211975097656	2	495.820953	989.627353	0.42549	0.00021097	-0.088713	-4.3986E-05	0.33678	0.00016698	495.8210157609309	70.991	0.55193	70.991	70.657	71.209	0					26	19	2	0	0	0	0.06608	1	18006	18006		46.921	14.804	1	361410			24851	2868	14187	14188	31119	31119					0.13212398242046675
LPHLVVSII	9	Unmodified	_LPHLVVSII_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.82110595703125	2	495.820953	989.627353	0.40693	0.00020177	-0.28666	-0.00014213	0.12028	5.9637E-05	495.82075870977263	70.929	0.43857	70.989	70.772	71.21	0.060783					26	15	2	0	0	0	0.06608	2	17997	17988;17997		46.921	14.804	1	299790			24852	2868	14187	14188	31120;31121	31121					0.13212398242046675
LPHLVVSII	9	Unmodified	_LPHLVVSII_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.28558349609375	2	495.820953	989.627353	0.45285	0.00022453	-0.34385	-0.00017049	0.109	5.4047E-05	495.82082423558006	71.005	0.41263	70.98	70.718	71.13	-0.024864					23	14	2	0	0	0	0.17949	1	18006	18006		32.117	7.4431	1	245480			24853	2868	14187	14188	31122	31122					0.13212398242046675
LPHMIPLI	8	Unmodified	_LPHMIPLI_					0	0	0		ENST00000377270.7_1_9:71687674-71687986:+|nuORF	ENST00000377270.7_1_9:71687674-71687986:+|nuORF	ENST00000377270.7_1_9:71687674-71687986:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.27740478515625	2	467.283149	932.551745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.473	1	95.473	94.973	95.973	0								0	0	0	0.32888	1	25486	25486		24.21	7.1234	1				24854	9934	14188	14189	31123	31123					0.08277097790130483
LPHPFALTL	9	Unmodified	_LPHPFALTL_					0	0	0		ENSG00000070018|ENST00000261349|LRP6;ENST00000545658.1_1_12:12339851-12356225:-|nuORF	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.79779052734375	2	504.797478	1007.5804	0.30371	0.00015331	0.28263	0.00014267	0.58633	0.00029598	504.7975406206334	67.432	1.2139	67.432	66.937	68.15	0					117	42	4	0	0	0	0.00097449	5	16871	16871;16919;16969;17016;17083		123.1	0	1	7048800			24855	915	14189	14190	31124;31125;31126;31127;31128	31124					0.0769153869089223
LPHPFALTL	9	Unmodified	_LPHPFALTL_					0	0	0		ENSG00000070018|ENST00000261349|LRP6;ENST00000545658.1_1_12:12339851-12356225:-|nuORF	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7977294921875	2	504.797478	1007.5804	0.30016	0.00015152	0.25155	0.00012698	0.55171	0.0002785	504.79754130069995	67.342	1.2364	67.42	66.957	68.193	0.078041					112	43	4	0	0	0	0.00033206	4	16875	16824;16875;16923;16968		131.3	0	1	7141000			24856	915	14189	14190	31129;31130;31131;31132	31130					0.0769153869089223
LPHPFALTL	9	Unmodified	_LPHPFALTL_					0	0	0		ENSG00000070018|ENST00000261349|LRP6;ENST00000545658.1_1_12:12339851-12356225:-|nuORF	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7976989746094	2	504.797478	1007.5804	0.19934	0.00010063	0.14984	7.564E-05	0.34918	0.00017627	504.79760424236486	67.415	1.7477	67.399	66.6	68.348	-0.016296					162	61	5	0	0	0	0.00097449	5	16960	16860;16911;16960;17005;17058		123.1	0	1	6348800			24857	915	14189	14190	31133;31134;31135;31136;31137	31135					0.0769153869089223
LPHPGLQV	8	Unmodified	_LPHPGLQV_					0	0	0		ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.7528991699219	2	430.75307	859.491587	0.1128	4.8591E-05	-0.054735	-2.3577E-05	0.05807	2.5014E-05	430.75291901880604	43.223	1.3294	43.301	42.772	44.102	0.077515					119	48	4	0	0	0	0.018305	1	9477	9477		104.31	44.515	1	3270300			24858	7471	14190	14191	31138	31138					0.056221234512463525
LPHPGLQV	8	Unmodified	_LPHPGLQV_					0	0	0		ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.7528991699219	2	430.75307	859.491587	-0.098682	-4.2507E-05	0.10405	4.4821E-05	0.0053705	2.3134E-06	430.75300751605835	43.221	1.2887	43.305	42.655	43.944	0.083996					95	47	3	0	0	0	0.028313	1	9477	9477		90.836	31.041	1	3219000			24859	7471	14190	14191	31139	31139					0.056221234512463525
LPHPIIVSI	9	Unmodified	_LPHPIIVSI_					0	0	0		nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.8129577636719	2	494.813128	987.611703	0.44227	0.00021884	-0.4279	-0.00021173	0.014372	7.1114E-06	494.812850976945	62.253	1.0205	62.253	61.836	62.856	0					80	37	3	0	0	0	0.0084096	1	15382	15382		81.864	37.457	1	1368800			24860	8247	14191	14192	31140	31140					0.11740111724986946
LPHPIIVSI	9	Unmodified	_LPHPIIVSI_					0	0	0		nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.8130798339844	2	494.813128	987.611703	0.31083	0.00015381	-0.2942	-0.00014557	0.016633	8.2304E-06	494.812921392463	62.135	0.95902	62.232	61.867	62.826	0.096985					77	34	3	0	0	0	0.14219	1	15316	15316		40.449	17.3	1	1392300			24861	8247	14191	14192	31141	31141					0.11740111724986946
LPHPIIVSI	9	Unmodified	_LPHPIIVSI_					0	0	0		nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.8131408691406	2	494.813128	987.611703	0.36745	0.00018182	-0.26515	-0.0001312	0.1023	5.0619E-05	494.81291659445435	62.245	0.85236	62.236	61.878	62.731	-0.0085526					69	31	3	0	0	0	0.0046213	1	15342	15342		89.427	38.572	1	1399800			24862	8247	14191	14192	31142	31142					0.11740111724986946
LPHPVGSRLF	10	Unmodified	_LPHPVGSRLF_					0	0	0		ENST00000393409.2_1_3:126752902-126753223:+|nuORF	ENST00000393409.2_1_3:126752902-126753223:+|nuORF	ENST00000393409.2_1_3:126752902-126753223:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.345458984375	2	561.824558	1121.63456	-0.147	-8.2588E-05	-2.3964	-0.0013464	-2.5434	-0.001429	561.8232794605779	13.142	0.19729	13.075	12.965	13.162	-0.067495					10	6	2	0	0	0	0.32132	1	335	335		1.4819	0.79152	1	22100			24863	10047	14192	14193	31143	31143					0.07861130842479724
LPHRQYVLCTL	11	Unmodified	_LPHRQYVLCTL_					0	0	0		ENST00000324866.11_1_11:71806383-71806563:+|nuORF	ENST00000324866.11_1_11:71806383-71806563:+|nuORF	ENST00000324866.11_1_11:71806383-71806563:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2551574707031	3	448.248185	1341.72273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.498	1	41.498	40.998	41.998	0								0	0	0	0.30034	1	8948	8948		19.144	1.2808	1				24864	9406	14193	14194	31144	31144					0.06553383370783195
LPHSATVTL	9	Unmodified	_LPHSATVTL_					0	0	0		nc|ENSG00000054611|Q8WUA7-3|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A;ENSG00000054611|ENST00000337137|TBC1D22A	nc|ENSG00000054611|Q8WUA7-3|TBC1D22A	nc|ENSG00000054611|Q8WUA7-3|TBC1D22A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.27691650390625	2	469.768917	937.523281	-0.15578	-7.3182E-05	0.32008	0.00015037	0.1643	7.7183E-05	469.7690855384854	41.062	0.64513	41.062	40.796	41.441	0					50	23	3	0	0	0	0.090484	1	8848	8848		46.021	15.796	1	1493500			24865	691	14194	14195	31145	31145					0.052020714145328384
LPHSATVTL	9	Unmodified	_LPHSATVTL_					0	0	0		nc|ENSG00000054611|Q8WUA7-3|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A;ENSG00000054611|ENST00000337137|TBC1D22A	nc|ENSG00000054611|Q8WUA7-3|TBC1D22A	nc|ENSG00000054611|Q8WUA7-3|TBC1D22A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.27691650390625	2	469.768917	937.523281	0.17443	8.1943E-05	-0.18944	-8.8991E-05	-0.015003	-7.048E-06	469.76889384030096	40.897	0.74107	40.989	40.718	41.459	0.09267					53	27	3	0	0	0	0.11486	1	8767	8767		48.346	10.195	1	1673700			24866	691	14194	14195	31146	31146					0.052020714145328384
LPHSATVTL	9	Unmodified	_LPHSATVTL_					0	0	0		nc|ENSG00000054611|Q8WUA7-3|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A;ENSG00000054611|ENST00000337137|TBC1D22A	nc|ENSG00000054611|Q8WUA7-3|TBC1D22A	nc|ENSG00000054611|Q8WUA7-3|TBC1D22A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.27691650390625	2	469.768917	937.523281	0.041861	1.9665E-05	0.11694	5.4934E-05	0.1588	7.4599E-05	469.7689521940902	40.809	0.70729	40.908	40.666	41.373	0.099403					50	25	3	0	0	0	0.074331	1	8735	8735		61.357	31.133	1	1759100			24867	691	14194	14195	31147	31147					0.052020714145328384
LPHSVLLEI	9	Unmodified	_LPHSVLLEI_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1;PSAT1|p.G218Lfs*87|1|0.05|ENSG00000135069|chr9:78308494-78308495|-/CTTAAGAA|frameshift_variant	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.807861328125	2	510.808042	1019.60153	0.41162	0.00021026	-0.71764	-0.00036658	-0.30603	-0.00015632	510.8076380652332	63.88	0.76613	63.972	63.678	64.445	0.09288					65	27	3	0	0	0	0.013258	1	15845	15845		74.423	9.1877	1	569680			24868	3842	14195	14196	31148	31148					0.09251503999769284
LPHSVLLEI	9	Unmodified	_LPHSVLLEI_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1;PSAT1|p.G218Lfs*87|1|0.05|ENSG00000135069|chr9:78308494-78308495|-/CTTAAGAA|frameshift_variant	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	510.808042	1019.60153	0.53725	0.00027443	-0.73295	-0.0003744	-0.1957	-9.9966E-05	510.80763326517706	63.997	0.62033	63.997	63.722	64.342	0	0.0079728	-4.8577E-05	NaN	74.423	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	662090			24869	3842	14195	14196							0.09251503999769284
LPHSVLLEI	9	Unmodified	_LPHSVLLEI_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1;PSAT1|p.G218Lfs*87|1|0.05|ENSG00000135069|chr9:78308494-78308495|-/CTTAAGAA|frameshift_variant	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	510.808042	1019.60153	0.47023	0.0002402	-0.62862	-0.0003211	-0.15838	-8.0904E-05	510.80780902586696	64.008	0.59372	63.998	63.745	64.339	-0.0095291	0.0090067	5.8009E-05	NaN	74.423	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	609140			24870	3842	14195	14196							0.09251503999769284
LPHSVNSK	8	Unmodified	_LPHSVNSK_					0	0	0		ENSG00000180011|ENST00000322342|PTGR3;nc|ENSG00000180011|Q8N4Q0-2|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2073059082031	2	441.245609	880.476666	-0.028192	-1.244E-05	0.45255	0.00019969	0.42436	0.00018725	441.24582609454586	26.316	0.70632	26.278	25.957	26.664	-0.038671					32	24	2	0	0	0	0.3408	1	4366	4366		10.074	0	1	63031			24871	7162	14196	14197	31149	31149					0.03164631583240407
LPHSVNSK	8	Unmodified	_LPHSVNSK_					0	0	0		ENSG00000180011|ENST00000322342|PTGR3;nc|ENSG00000180011|Q8N4Q0-2|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2073974609375	2	441.245609	880.476666	0.21719	9.5835E-05	-0.33681	-0.00014862	-0.11962	-5.2783E-05	441.24546694908247	26.368	0.54147	26.346	26.073	26.614	-0.022238					27	18	2	0	0	0	0.33293	1	4355	4355		20.454	3.5113	1	82322			24872	7162	14196	14197	31150	31150					0.03164631583240407
LPHTANRSLI	10	Unmodified	_LPHTANRSLI_					0	0	0			REV__ENSG00000073150|ENST00000395842|PANX2	REV__ENSG00000073150|ENST00000395842|PANX2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3163452148438	2	561.324922	1120.63529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.943	1	94.029	93.529	94.529	0.08667								0	0	0	0.35216	1	25037	25037		13.906	0.39817	1		+		24873	13773	14197	14198	31151	31151					0.07979925491508766
LPHTAWPL	8	Unmodified	_LPHTAWPL_					0	0	0		nc|ENSG00000180259|Q86SH4|PRNT	nc|ENSG00000180259|Q86SH4|PRNT	nc|ENSG00000180259|Q86SH4|PRNT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7533264160156	2	467.760895	933.507237	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.6	1	59.695	59.195	60.195	0.095093								0	0	0	0.35251	1	14517	14517		13.508	4.1604	1				24874	12865	14198	14199	31152	31152					0.03782409968277989
LPHTFQFI	8	Unmodified	_LPHTFQFI_					0	0	0		ENSG00000124788|ENST00000436367|ATXN1	ENSG00000124788|ENST00000436367|ATXN1	ENSG00000124788|ENST00000436367|ATXN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2510681152344	2	501.774003	1001.53345	0.35731	0.00017929	0.92365	0.00046346	1.281	0.00064275	501.7742913035839	63.046	0.67587	63.046	62.689	63.364	0					52	24	3	0	0	0	0.28969	1	15580	15580		28.487	0	1	311900			24875	3183	14199	14200	31153	31153					0.0327467913974715
LPHTFQFI	8	Unmodified	_LPHTFQFI_					0	0	0		ENSG00000124788|ENST00000436367|ATXN1	ENSG00000124788|ENST00000436367|ATXN1	ENSG00000124788|ENST00000436367|ATXN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2510681152344	2	501.774003	1001.53345	0.29236	0.0001467	1.0781	0.00054096	1.3705	0.00068766	501.77437036635496	62.994	0.59263	62.986	62.705	63.297	-0.0085564					55	21	3	0	0	0	0.2564	1	15565	15565		48.346	3.9388	1	317420			24876	3183	14199	14200	31154	31154					0.0327467913974715
LPHVIVENI	9	Unmodified	_LPHVIVENI_					0	0	0		ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENST00000506426.1_1_4:184626141-184627956:+|nuORF	ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7620239257812	2	517.305667	1032.59678	0.84412	0.00043667	0.20805	0.00010763	1.0522	0.00054429	517.305740249315	56.076	0.94894	56.147	55.646	56.595	0.070885					52	34	3	0	0	0	0.1939	1	13346	13346		24.021	0.87215	1	2247100			24877	6282	14200	14201	31155	31155					0.08178619856994374
LPHVNTRL	8	Unmodified	_LPHVNTRL_					0	0	0		HIVEP2|p.K1731Ifs*8|1|0.06|ENSG00000010818|chr6:142768532-142768533|-/GAAAGCTGAAAGTAAA|frameshift_variant;ENSG00000010818|ENST00000367603|HIVEP2	HIVEP2|p.K1731Ifs*8|1|0.06|ENSG00000010818|chr6:142768532-142768533|-/GAAAGCTGAAAGTAAA|frameshift_variant	HIVEP2|p.K1731Ifs*8|1|0.06|ENSG00000010818|chr6:142768532-142768533|-/GAAAGCTGAAAGTAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.282470703125	2	475.282526	948.550499	-0.0073637	-3.4999E-06	0.084098	3.997E-05	0.076734	3.647E-05	475.28251293993554	27.314	0.72246	27.314	27.091	27.814	0					45	24	3	0	0	0	0.43043	1	4604	4604		12.532	0	1	317530			24878	429	14201	14202	31156	31156					0.07416599745567964
LPHVPLGVI	9	Unmodified	_LPHVPLGVI_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000462297.1_1_2:74754523-74754670:-|nuORF;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1;ENST00000466894.5_1_2:74754206-74756164:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.8000793457031	2	472.80002	943.585488	0.32722	0.00015471	-0.33532	-0.00015854	-0.0081045	-3.8318E-06	472.8001295002228	64.092	2.4562	64.092	63.389	65.845	0					245	89	5	0	0	0	0.00213	4	15840	15806;15840;15888;15938		109.15	72.688	1	23113000			24879	2632;10775	14202	14203	31157;31158;31159;31160	31158					0.11143842553531158
LPHVPLGVI	9	Unmodified	_LPHVPLGVI_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000462297.1_1_2:74754523-74754670:-|nuORF;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1;ENST00000466894.5_1_2:74754206-74756164:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.8001403808594	2	472.80002	943.585488	0.34085	0.00016115	-0.43764	-0.00020692	-0.096788	-4.5762E-05	472.80009188913857	63.98	3.3928	64.073	63.442	66.835	0.092884					276	123	5	0	0	0	0.00213	4	15791	15768;15791;15840;15888		109.15	78.929	1	23331000			24880	2632;10775	14202	14203	31161;31162;31163;31164	31162					0.11143842553531158
LPHVPLGVI	9	Unmodified	_LPHVPLGVI_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000462297.1_1_2:74754523-74754670:-|nuORF;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1;ENST00000466894.5_1_2:74754206-74756164:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.8001708984375	2	472.80002	943.585488	0.44401	0.00020993	-0.50523	-0.00023887	-0.061218	-2.8944E-05	472.80002522533835	64.118	3.7474	64.109	63.407	67.155	-0.0095291					301	136	5	0	0	0	0.00070004	5	15861	15792;15817;15861;15902;15951		126.6	80.85	1	23557000			24881	2632;10775	14202	14203	31165;31166;31167;31168;31169	31167					0.11143842553531158
LPHVPLGVI	9	Unmodified	_LPHVPLGVI_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000462297.1_1_2:74754523-74754670:-|nuORF;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1;ENST00000466894.5_1_2:74754206-74756164:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.8008728027344	2	472.80002	943.585488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.352	1	67.336	66.836	67.836	-0.016296								0	0	0	0.22457	1	16896	16896		14.582	5.2343	1				24882	2632;10775	14202	14203	31170	31170					0.11143842553531158
LPHWRMPPL	9	Unmodified	_LPHWRMPPL_					0	0	0			REV__ENSG00000249715|ENST00000624922|FER1L5	REV__ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.292724609375	2	573.815679	1145.6168	0.15551	8.9234E-05	3.9082	0.0022426	4.0638	0.0023318	573.818067021421	17.813	0.20729	17.813	17.66	17.867	0					9	6	2	0	0	0	0.26145	1	1750	1750		2.0598	0.40713	1	21896	+		24883	19211	14203	14204	31171	31171					0.0498209231598139
LPHYPGLL	8	Unmodified	_LPHYPGLL_					0	0	0		ENSG00000171195|ENST00000304887|MUC7	ENSG00000171195|ENST00000304887|MUC7	ENSG00000171195|ENST00000304887|MUC7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2774353027344	2	455.263271	908.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.035	1	78.004	77.504	78.504	-0.030434								0	0	0	0.34461	1	20154	20154		17.087	5.9721	1				24884	6522	14204	14205	31172	31172					0.054072941110462125
LPIAFAIVK	9	Unmodified	_LPIAFAIVK_					0	0	0			REV__nc|ENSG808|P60509|ERVPABLB-1	REV__nc|ENSG808|P60509|ERVPABLB-1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	486.318046	970.621539	0.29884	0.00014533	1.4751	0.00071735	1.7739	0.00086268	486.3185843593308	68.508	0.74771	68.508	68.124	68.872	0					49	27	2	0	0	0	0.25526	1	17156	17156		7.9102	0.62092	1	1020500	+		24885	23263	14205	14206	31173	31173					0.13505299730354636
LPIAPSHVI	9	Unmodified	_LPIAPSHVI_					0	0	0		ENST00000307403.6_1_7:155532339-155538302:+|nuORF;ENSG00000184863|ENST00000401878|RBM33	ENST00000307403.6_1_7:155532339-155538302:+|nuORF	ENST00000307403.6_1_7:155532339-155538302:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.78948974609375	2	473.789653	945.564752	0.12935	6.1283E-05	-0.1116	-5.2877E-05	0.017742	8.4061E-06	473.78948550429834	50.025	0.89275	50.025	49.488	50.381	0					66	32	3	0	0	0	0.0075168	1	11564	11564		77.984	24.409	1	1011800			24886	7477	14206	14207	31174	31174					0.08979252173844543
LPIAPSHVI	9	Unmodified	_LPIAPSHVI_					0	0	0		ENST00000307403.6_1_7:155532339-155538302:+|nuORF;ENSG00000184863|ENST00000401878|RBM33	ENST00000307403.6_1_7:155532339-155538302:+|nuORF	ENST00000307403.6_1_7:155532339-155538302:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7893371582031	2	473.789653	945.564752	0.52206	0.00024735	-0.50624	-0.00023985	0.015824	7.4972E-06	473.7893228011347	50.011	0.82534	50.056	49.776	50.602	0.044891					63	30	3	0	0	0	0.0088261	1	11609	11609		85.357	31.781	1	961680			24887	7477	14206	14207	31175	31175					0.08979252173844543
LPIAPSHVI	9	Unmodified	_LPIAPSHVI_					0	0	0		ENST00000307403.6_1_7:155532339-155538302:+|nuORF;ENSG00000184863|ENST00000401878|RBM33	ENST00000307403.6_1_7:155532339-155538302:+|nuORF	ENST00000307403.6_1_7:155532339-155538302:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7894592285156	2	473.789653	945.564752	0.50773	0.00024056	-0.56064	-0.00026562	-0.052903	-2.5065E-05	473.78930428098784	49.993	0.98862	50.014	49.67	50.658	0.020691					67	36	3	0	0	0	0.0075168	1	11553	11553		89.427	35.851	1	1137000			24888	7477	14206	14207	31176	31176					0.08979252173844543
LPIASSIRL	9	Unmodified	_LPIASSIRL_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2	nc|ENSG00000103197|P49815-4|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.800537109375	2	485.30821	968.601866	0.65931	0.00031997	0.14698	7.1332E-05	0.80629	0.0003913	485.3082076665303	58.319	0.74149	58.303	58.034	58.776	-0.015587					38	26	2	0	0	0	0.13748	1	14179	14179		32.786	2.1491	1	336090			24889	1817	14207	14208	31177	31177					0.11630923719599195
LPIDKSKPF	9	Unmodified	_LPIDKSKPF_					0	0	0			REV__nc|ENSG00000163219|P42331-2|ARHGAP25	REV__nc|ENSG00000163219|P42331-2|ARHGAP25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3238525390625	2	522.808042	1043.60153	0.49147	0.00025695	-0.96844	-0.00050631	-0.47696	-0.00024936	522.8076436449564	70.457	0.43781	70.457	70.301	70.739	0					23	15	2	0	0	0	0.23775	1	17892	17892		18.135	1.0221	1	225450	+		24890	17044	14208	14209	31178	31178					0.08147503999748551
LPIESQMV	8	Oxidation (M)	_LPIESQM(Oxidation (M))V_		LPIESQM(1)V		LPIESQM(55)V	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.74114990234375	2	466.741511	931.468469	0.35251	0.00016453	-0.25513	-0.00011908	0.097382	4.5452E-05	466.7412865577306	45.086	0.85431	45.161	44.643	45.497	0.07505					52	31	2	0	0	0	0.13277	1	10048	10048		54.774	10.367	1	386530			24891	4558	14209	14210	31179	31179		577			-6.8344839974088245E-06
LPIFLIQK	8	Unmodified	_LPIFLIQK_					0	0	0		ENST00000379660.4_1_6:8435461-8435506:-|nuORF	ENST00000379660.4_1_6:8435461-8435506:-|nuORF	ENST00000379660.4_1_6:8435461-8435506:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.800048828125	2	486.318046	970.621539	0.67897	0.0003302	-3.3011	-0.0016054	-2.6221	-0.0012752	486.31646714915473	54.989	0.37526	54.973	54.631	55.006	-0.015919					16	13	2	0	0	0	0.33245	1	12993	12993		19.439	6.9074	1	261170			24892	9975	14210	14211	31180	31180					0.13505299730366005
LPIFLPRV	8	Unmodified	_LPIFLPRV_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.8104553222656	2	477.810388	953.606223	0.16692	7.9758E-05	0.19731	9.4277E-05	0.36423	0.00017403	477.8104118098067	70.162	1.0856	70.162	69.787	70.873	0					77	39	3	0	0	0	0.13961	2	17785	17785;17832		53.576	6.6547	1	718120			24893	2666	14211	14212	31181;31182	31181					0.12756432933167616
LPIFLPRV	8	Unmodified	_LPIFLPRV_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.8103942871094	2	477.810388	953.606223	0.27835	0.000133	0.8287	0.00039596	1.107	0.00052896	477.8103315494818	70.245	1.1669	70.223	69.779	70.946	-0.022087					91	41	4	0	0	0	0.13961	1	17798	17798		53.576	6.6547	1	737040			24894	2666	14211	14212	31183	31183					0.12756432933167616
LPIFSRLSI	9	Unmodified	_LPIFSRLSI_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1;ENSG00000152518|ENST00000282388|ZFP36L2	ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000152518|ENST00000282388|ZFP36L2	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3238525390625	2	523.32386	1044.63317	0.4996	0.00026145	0.25543	0.00013367	0.75502	0.00039512	523.3238898597232	70.556	0.80574	70.556	70.209	71.015	0					53	28	2	0	0	0	0.0076724	1	17892	17892		78.06	0	1	818760			24895	7546;5023	14212	14213	31184	31184					0.11263496753713298
LPIGDTLGSH	10	Unmodified	_LPIGDTLGSH_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.26971435546875	2	505.269281	1008.52401	0.2939	0.0001485	1.1109	0.0005613	1.4048	0.0007098	505.2697778057744	81.58	0.54374	81.58	81.375	81.919	0					54	22	3	0	0	0	0.29978	2	21280	21237;21280		20.454	0	1	663630	+		24896	13235	14213	14214	31185;31186	31186					0.020088660635906308
LPIGDTLGSH	10	Unmodified	_LPIGDTLGSH_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.269287109375	2	505.269281	1008.52401	0.019474	9.8395E-06	1.3979	0.00070633	1.4174	0.00071616	505.2698893776039	81.555	0.61001	81.624	81.382	81.992	0.068993					58	27	3	0	0	0	0.33817	1	21200	21200		14.838	0	1	786210	+		24897	13235	14213	14214	31187	31187					0.020088660635906308
LPIGIPYSI	9	Unmodified	_LPIGIPYSI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7921447753906	2	486.791861	971.569169	0.23726	0.0001155	-0.44245	-0.00021538	-0.20519	-9.9884E-05	486.7919181603363	81.576	0.66449	81.576	81.28	81.944	0					45	28	2	0	0	0	0.080002	1	21281	21281		46.921	14.804	1	584120			24898	4544	14214	14215	31188	31188					0.0822471659673738
LPIGIPYSI	9	Unmodified	_LPIGIPYSI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.792236328125	2	486.791861	971.569169	-0.020492	-9.9751E-06	-0.66136	-0.00032195	-0.68186	-0.00033192	486.79205252236164	81.482	0.61785	81.551	81.281	81.898	0.068993					73	28	3	0	0	0	0.040195	2	21203	21203;21214		56.541	6.8724	1	528810			24899	4544	14214	14215	31189;31190	31189					0.0822471659673738
LPIGIPYSI	9	Unmodified	_LPIGIPYSI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7921142578125	2	486.791861	971.569169	0.31099	0.00015139	-0.98568	-0.00047982	-0.67468	-0.00032843	486.7918828056687	81.63	0.63037	81.606	81.374	82.004	-0.02404					69	27	3	0	0	0	0.10075	2	21279	21279;21329		38.151	0	1	647280			24900	4544	14214	14215	31191;31192	31191					0.0822471659673738
LPIGNKSI	8	Unmodified	_LPIGNKSI_					0	0	0		ENST00000449742.6_1_6:30126994-30128439:-|nuORF	ENST00000449742.6_1_6:30126994-30128439:-|nuORF	ENST00000449742.6_1_6:30126994-30128439:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.26141357421875	2	421.260728	840.506903	0.20047	8.4449E-05	-1.7605	-0.00074161	-1.56	-0.00065717	421.2598615215447	77.384	1.4187	77.384	76.725	78.144	0					114	52	3	0	0	0	0.39068	1	19874	19874		20.454	0	1	591020			24901	10633	14215	14216	31193	31193					0.08026990248424681
LPIHRMRAA	9	Unmodified	_LPIHRMRAA_					0	0	0			REV__ENST00000586588.5_1_19:10244345-10254710:-|nuORF	REV__ENST00000586588.5_1_19:10244345-10254710:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.8198852539062	2	532.810928	1063.6073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.414	1	25.358	24.858	25.858	-0.055931								0	0	0	0.22789	1	4048	4048		13.508	0.46542	1		+		24902	15482	14216	14217	31194	31194					0.07804324030439602
LPIIANMI	8	Oxidation (M)	_LPIIANM(Oxidation (M))I_		LPIIANM(1)I		LPIIANM(99)I	0	0	1		ENSG00000184867|ENST00000356824|ARMCX2	ENSG00000184867|ENST00000356824|ARMCX2	ENSG00000184867|ENST00000356824|ARMCX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.76470947265625	2	450.764789	899.515025	0.45398	0.00020464	-0.80038	-0.00036078	-0.34641	-0.00015615	450.76431575618153	65.855	0.75063	65.855	65.488	66.239	0					64	26	3	0	0	0	0.022392	3	16462	16415;16462;16516		98.807	20.362	1	1491600			24903	7478	14217	14218	31195;31196;31197	31196		827			0.061248011735415275
LPIIANMI	8	Oxidation (M)	_LPIIANM(Oxidation (M))I_		LPIIANM(1)I		LPIIANM(99)I	0	0	1		ENSG00000184867|ENST00000356824|ARMCX2	ENSG00000184867|ENST00000356824|ARMCX2	ENSG00000184867|ENST00000356824|ARMCX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7646179199219	2	450.764789	899.515025	0.36719	0.00016552	-0.6621	-0.00029845	-0.29491	-0.00013293	450.76434736151236	65.737	0.7329	65.826	65.491	66.224	0.088882					67	26	3	0	0	0	0.022392	4	16418	16374;16418;16467;16478		98.807	20.362	1	1458100			24904	7478	14217	14218	31198;31199;31200;31201	31199		827			0.061248011735415275
LPIIANMI	8	Oxidation (M)	_LPIIANM(Oxidation (M))I_		LPIIANM(1)I		LPIIANM(110)I	0	0	1		ENSG00000184867|ENST00000356824|ARMCX2	ENSG00000184867|ENST00000356824|ARMCX2	ENSG00000184867|ENST00000356824|ARMCX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.76458740234375	2	450.764789	899.515025	0.35068	0.00015807	-0.836	-0.00037684	-0.48532	-0.00021876	450.76430847278044	65.872	0.82551	65.861	65.53	66.355	-0.011337					65	29	3	0	0	0	0.016422	2	16413	16413;16462		106.85	20.724	1	1435900			24905	7478	14217	14218	31202;31203	31202		827			0.061248011735415275
LPIKISHTF	9	Unmodified	_LPIKISHTF_					0	0	0		ENST00000356891.3_1_12:88433985-88436628:+|nuORF	ENST00000356891.3_1_12:88433985-88436628:+|nuORF	ENST00000356891.3_1_12:88433985-88436628:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7716674804688	2	528.316035	1054.61752	0.28833	0.00015233	-2.0158	-0.001065	-1.7274	-0.00091264	528.3157862524887	42.629	0.83898	42.629	42.277	43.116	0					66	30	4	0	0	0	0.1939	1	9331	9331		30.637	3.7529	1	567920			24906	9627	14218	14219	31204	31204					0.09239210236637518
LPIKLPVG	8	Unmodified	_LPIKLPVG_					0	0	0		nc|ENSG00000177595|Q9HB75-6|PIDD1;ENST00000527357.5_1_11:799959-801918:-|nuORF;nc|ENSG00000177595|Q9HB75-5|PIDD1;ENST00000534525.5_1_11:799959-803120:-|nuORF	nc|ENSG00000177595|Q9HB75-6|PIDD1	nc|ENSG00000177595|Q9HB75-6|PIDD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.92755126953125	2	418.783839	835.553125	0.30695	0.00012855	-0.32935	-0.00013793	-0.022397	-9.3797E-06	418.78363058674853	54.894	1.1022	54.894	54.462	55.564	0					59	40	3	0	0	0	0.34046	1	13273	13273		14.582	5.2343	1	449650			24907	11569	14219	14220	31205	31205					0.12877055150511296
LPIKLPVG	8	Unmodified	_LPIKLPVG_					0	0	0		nc|ENSG00000177595|Q9HB75-6|PIDD1;ENST00000527357.5_1_11:799959-801918:-|nuORF;nc|ENSG00000177595|Q9HB75-5|PIDD1;ENST00000534525.5_1_11:799959-803120:-|nuORF	nc|ENSG00000177595|Q9HB75-6|PIDD1	nc|ENSG00000177595|Q9HB75-6|PIDD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	418.783839	835.553125	0.41393	0.00017335	-0.46159	-0.00019331	-0.047663	-1.9961E-05	418.7835796263227	54.861	1.0439	54.924	54.483	55.527	0.063202	-0.013351	-4.1631E-05	NaN	14.582	64	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	734790			24908	11569	14219	14220							0.12877055150511296
LPIKLPVG	8	Unmodified	_LPIKLPVG_					0	0	0		nc|ENSG00000177595|Q9HB75-6|PIDD1;ENST00000527357.5_1_11:799959-801918:-|nuORF;nc|ENSG00000177595|Q9HB75-5|PIDD1;ENST00000534525.5_1_11:799959-803120:-|nuORF	nc|ENSG00000177595|Q9HB75-6|PIDD1	nc|ENSG00000177595|Q9HB75-6|PIDD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	418.783839	835.553125	0.4574	0.00019155	-0.47282	-0.00019801	-0.015427	-6.4606E-06	418.78359657797745	55.011	0.96683	54.995	54.415	55.382	-0.015923	0.056907	-5.1036E-05	NaN	14.582	47	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	460100			24909	11569	14219	14220							0.12877055150511296
LPIKTYVL	8	Unmodified	_LPIKTYVL_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7893371582031	2	473.802229	945.589904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.154	1	50.199	49.699	50.699	0.044891								0	0	0	0.35779	1	11609	11609		11.114	0.93107	1		+		24910	15880	14220	14221	31206	31206					0.11493306976421991
LPILIVTTAI	10	Unmodified	_LPILIVTTAI_					0	0	0		ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3133544921875	2	527.349543	1052.68453	0.35394	0.00018665	0.67092	0.00035381	1.0249	0.00054046	527.3497984664713	53.569	0.93996	53.625	53.325	54.265	0.056255					74	35	3	0	0	0	0.31267	1	12656	12656		6.2058	2.2614	1	887770			24911	7935	14221	14222	31207	31207					0.16029820727726474
LPILIVTTAI	10	Unmodified	_LPILIVTTAI_					0	0	0		ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3501586914062	2	527.349543	1052.68453	0.60663	0.00031991	0.84239	0.00044424	1.449	0.00076414	527.3497529418607	53.772	1.0905	53.762	53.305	54.395	-0.0096054					80	40	3	0	0	0	0.36002	1	12732	12732		10.824	2.9138	1	893040			24912	7935	14221	14222	31208	31208					0.16029820727726474
LPILIVTTAI	10	Unmodified	_LPILIVTTAI_					0	0	0		ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	527.349543	1052.68453	0.70024	0.00036927	0.41743	0.00022013	1.1177	0.0005894	527.3495841749449	53.585	1.0631	53.585	53.259	54.322	0	-0.072048	-0.00025183	NaN	6.2058	80	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	957460			24913	7935	14221	14222							0.16029820727726474
LPILLCCFRAL	11	Unmodified	_LPILLCCFRAL_					0	0	0		nc|ENSG00000171053|Q8WXA2-2|PATE1;ENSG00000171053|ENST00000305738|PATE1	nc|ENSG00000171053|Q8WXA2-2|PATE1	nc|ENSG00000171053|Q8WXA2-2|PATE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.57025146484375	3	421.243495	1260.70866	-0.31762	-0.00013379	-0.42227	-0.00017788	-0.73989	-0.00031167	421.24331386743427	14.729	2.8186	14.729	14.423	17.242	0					241	98	3	0	0	0	0.44443	1	1421	1421		5.4027	0.20427	1	661710			24914	6506	14222	14223	31209	31209					0.08873014618120578
LPILRPMVL	9	Oxidation (M)	_LPILRPM(Oxidation (M))VL_		LPILRPM(1)VL		LPILRPM(51)VL	0	0	1		ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP	ENSG00000175727|ENST00000319080|MLXIP	ENSG00000175727|ENST00000319080|MLXIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.3357543945312	2	534.335913	1066.65727	0.32275	0.00017246	-0.80862	-0.00043208	-0.48587	-0.00025962	534.3352862343895	61.557	0.60988	61.557	61.281	61.891	0					50	22	3	0	0	0	0.055495	1	15154	15154		50.855	29.108	1	788850			24915	6879	14223	14224	31210	31210		778			0.1266101391572647
LPILRPMVL	9	Oxidation (M)	_LPILRPM(Oxidation (M))VL_		LPILRPM(1)VL		LPILRPM(48)VL	0	0	1		ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP	ENSG00000175727|ENST00000319080|MLXIP	ENSG00000175727|ENST00000319080|MLXIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7615966796875	2	534.335913	1066.65727	-0.0097111	-5.189E-06	-0.35813	-0.00019136	-0.36784	-0.00019655	534.335509062323	61.382	0.59257	61.479	61.248	61.841	0.096985					54	21	3	0	0	0	0.11486	1	15141	15141		48.346	26.599	1	819270			24916	6879	14223	14224	31211	31211		778			0.1266101391572647
LPILRPMVL	9	Oxidation (M)	_LPILRPM(Oxidation (M))VL_		LPILRPM(1)VL		LPILRPM(57)VL	0	0	1		ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP	ENSG00000175727|ENST00000319080|MLXIP	ENSG00000175727|ENST00000319080|MLXIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.3356323242188	2	534.335913	1066.65727	0.16491	8.8119E-05	-0.61245	-0.00032725	-0.44754	-0.00023914	534.3354077490795	61.513	0.65126	61.504	61.194	61.845	-0.0094566					50	23	3	0	0	0	0.037693	1	15131	15131		57.471	57.471	1	868960			24917	6879	14223	14224	31212	31212		778			0.1266101391572647
LPILVQHI	8	Unmodified	_LPILVQHI_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000574547.5_1_17:4442712-4447986:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.80047607421875	2	466.80002	931.585488	-0.0043404	-2.0261E-06	0.64651	0.00030179	0.64216	0.00029976	466.80019946810296	57.954	0.89038	57.954	57.578	58.468	0					72	31	3	0	0	0	0.042326	3	13984	13984;14039;14095		81.864	7.5145	1	1352700			24918	3627	14224	14225	31213;31214;31215	31213					0.11695842553513103
LPILVQHI	8	Unmodified	_LPILVQHI_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000574547.5_1_17:4442712-4447986:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.80047607421875	2	466.80002	931.585488	0.078355	3.6576E-05	0.52672	0.00024587	0.60508	0.00028245	466.8001800109232	57.877	1.0353	57.963	57.571	58.606	0.085621					78	37	3	0	0	0	0.042326	3	13940	13940;13989;14042		81.864	10.833	1	1316500			24919	3627	14224	14225	31216;31217;31218	31216					0.11695842553513103
LPILVQHI	8	Unmodified	_LPILVQHI_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000574547.5_1_17:4442712-4447986:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.8005676269531	2	466.80002	931.585488	0.26632	0.00012432	0.61799	0.00028848	0.88431	0.0004128	466.8001801238123	57.978	0.91366	57.961	57.606	58.52	-0.0172					79	33	4	0	0	0	0.042326	3	13987	13987;14033;14089		81.864	10.833	1	1577200			24920	3627	14224	14225	31219;31220;31221	31219					0.11695842553513103
LPIPELPRE	9	Unmodified	_LPIPELPRE_					0	0	0			REV__ENST00000593203.1_1_19:10934344-10943016:+|nuORF	REV__ENST00000593203.1_1_19:10934344-10943016:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.31201171875	2	532.310949	1062.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.93	1	116.93	116.43	117.43	0								0	0	0	0.25858	1	30258	30258		3.5965	0.70727	1		+		24921	22580	14225	14226	31222	31222					0.07854602511406483
LPIPELPRE	9	Unmodified	_LPIPELPRE_					0	0	0			REV__ENST00000593203.1_1_19:10934344-10943016:+|nuORF	REV__ENST00000593203.1_1_19:10934344-10943016:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3111572265625	2	532.310949	1062.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.59	1	112.6	112.1	113.1	0.0131								0	0	0	0.25858	1	29299	29299		3.5965	0.70727	1		+		24922	22580	14225	14226	31223	31223					0.07854602511406483
LPIPELPRE	9	Unmodified	_LPIPELPRE_					0	0	0			REV__ENST00000593203.1_1_19:10934344-10943016:+|nuORF	REV__ENST00000593203.1_1_19:10934344-10943016:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3118896484375	2	532.310949	1062.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.91	1	115.93	115.43	116.43	0.018738								0	0	0	0.25858	1	30093	30093		3.5965	0.70727	1		+		24923	22580	14225	14226	31224	31224					0.07854602511406483
LPIPESQVITI	11	Unmodified	_LPIPESQVITI_					0	0	0		ENSG00000130313|ENST00000252603|PGLS	ENSG00000130313|ENST00000252603|PGLS	ENSG00000130313|ENST00000252603|PGLS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.3582153320312	2	605.358096	1208.70164	0.88298	0.00053452	-0.7086	-0.00042896	0.17438	0.00010556	605.3574104766951	77.772	0.48227	77.828	77.679	78.161	0.055412					31	17	2	0	0	0	0.35939	1	20095	20095		16.566	6.4153	1	287240			24924	3468	14226	14227	31225	31225					0.10563696542908474
LPIPESQVITI	11	Unmodified	_LPIPESQVITI_					0	0	0		ENSG00000130313|ENST00000252603|PGLS	ENSG00000130313|ENST00000252603|PGLS	ENSG00000130313|ENST00000252603|PGLS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	605.358096	1208.70164	0.89482	0.00054169	-0.30755	-0.00018618	0.58727	0.00035551	605.3577428932321	77.846	0.56378	77.846	77.58	78.144	0	-0.00016248	0.00014865	NaN	16.566	49	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208510			24925	3468	14226	14227							0.10563696542908474
LPIPESQVITI	11	Unmodified	_LPIPESQVITI_					0	0	0		ENSG00000130313|ENST00000252603|PGLS	ENSG00000130313|ENST00000252603|PGLS	ENSG00000130313|ENST00000252603|PGLS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	605.358096	1208.70164	0.87115	0.00052736	-0.3725	-0.0002255	0.49864	0.00030186	605.3577719513547	77.896	0.41061	77.865	77.65	78.061	-0.030991	0.018929	7.0012E-05	NaN	16.566	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202530			24926	3468	14226	14227							0.10563696542908474
LPIPRENVH	9	Unmodified	_LPIPRENVH_					0	0	0		ENSG00000187609|ENST00000340951|EXD3;ENST00000478344.6_1_9:140240296-140248823:-|nuORF;nc|ENSG00000187609|Q8N9H8-3|EXD3;ENST00000491734.6_1_9:140201404-140249090:-|nuORF;nc|ENSG00000187609|Q8N9H8-2|EXD3;ENST00000487745.5_1_9:140201404-140247406:-|nuORF	ENSG00000187609|ENST00000340951|EXD3	ENSG00000187609|ENST00000340951|EXD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2970581054688	2	537.806365	1073.59818	0.096006	5.1633E-05	0.30167	0.00016224	0.39768	0.00021387	537.806377577654	34.342	0.61546	34.409	34.181	34.797	0.066704					51	21	3	0	0	0	0.28128	1	6837	6837		11.64	1.5664	1	692470			24927	7696	14227	14228	31226	31226					0.0643225394574074
LPIQPAQHI	9	Unmodified	_LPIQPAQHI_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.25732421875	2	508.798009	1015.58147	0.13441	6.8389E-05	0.17394	8.8499E-05	0.30835	0.00015689	508.7979970161704	42.561	0.70038	42.646	42.407	43.107	0.085197					56	25	3	0	0	0	0.20651	1	9372	9372		20.454	3.5113	1	848360			24928	2700	14228	14229	31227	31227					0.07429753059784616
LPIQPAQHI	9	Unmodified	_LPIQPAQHI_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.2575988769531	2	508.798009	1015.58147	0.15609	7.9419E-05	0.1686	8.5785E-05	0.32469	0.0001652	508.7979884013958	42.569	0.62962	42.66	42.385	43.015	0.091362					56	22	4	0	0	0	0.20651	1	9347	9347		26.884	3.7352	1	833460			24929	2700	14228	14229	31228	31228					0.07429753059784616
LPIQPAQHI	9	Unmodified	_LPIQPAQHI_					0	0	0		nc|ENSG00000116044|Q16236-3|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;ENSG00000116044|ENST00000397062|NFE2L2;ENST00000477534.1_1_2:178098693-178128139:-|nuORF;ENST00000462023.1_1_2:178098693-178129304:-|nuORF	nc|ENSG00000116044|Q16236-3|NFE2L2	nc|ENSG00000116044|Q16236-3|NFE2L2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	508.798009	1015.58147	0.17967	9.1415E-05	0.14361	7.3067E-05	0.32328	0.00016448	508.79801641432823	42.705	0.79757	42.705	42.383	43.18	0	0.034527	-1.5357E-05	NaN	20.454	62	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	834350			24930	2700	14228	14229							0.07429753059784616
LPIRVLKM	8	Unmodified	_LPIRVLKM_					0	0	0		ENSG00000183779|ENST00000331569|ZNF703	ENSG00000183779|ENST00000331569|ZNF703	ENSG00000183779|ENST00000331569|ZNF703	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.30853271484375	2	485.317523	968.620493	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.422	1	58.422	57.922	58.922	0								0	0	0	0.3683	1	14162	14162		6.3541	0	1				24931	7406	14229	14230	31229	31229					0.13492762089822463
LPITGHWRM	9	Unmodified	_LPITGHWRM_					0	0	0		ENST00000261654.9_1_12:131451025-131456041:+|nuORF	ENST00000261654.9_1_12:131451025-131456041:+|nuORF	ENST00000261654.9_1_12:131451025-131456041:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7271728515625	2	555.797486	1109.58042	0.34755	0.00019317	-2.0268	-0.0011265	-1.6792	-0.0009333	556.2976021919194	87.815	0.16245	87.812	87.736	87.898	-0.0028381					11	9	2	0	0	0	0.25417	1	23141	23141		8.5933	1.304	1	63740			24932	8971	14230	14231	31230	31230					0.03001215419226355
LPITGRLVE	9	Unmodified	_LPITGRLVE_					0	0	0		ENST00000487903.5_1_13:113536381-113537092:+|nuORF	ENST00000487903.5_1_13:113536381-113537092:+|nuORF	ENST00000487903.5_1_13:113536381-113537092:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.32366943359375	2	499.305667	996.596781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.072	1	57.151	56.651	57.651	0.078674								0	0	0	0.21353	1	13746	13746		18.146	0.011366	1				24933	11128	14231	14232	31231	31231					0.09834619856997051
LPITQQKL	8	Unmodified	_LPITQQKL_					0	0	0			REV__ENST00000439908.1_1_X:18884431-18884560:+|nuORF	REV__ENST00000439908.1_1_X:18884431-18884560:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2687683105469	2	470.794935	939.575317	0.20614	9.7047E-05	-0.1633	-7.6879E-05	0.042839	2.0169E-05	470.79497334408165	55.459	0.56702	55.44	55.129	55.696	-0.019081					23	20	2	0	0	0	0.34185	1	13202	13202		10.183	4.423	1	261210	+		24934	16571	14232	14233	31232	31232					0.10311234828270699
LPIVPQLQV	9	Unmodified	_LPIVPQLQV_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.20623779296875	2	503.81841	1005.62227	0.64945	0.0003272	-0.23077	-0.00011626	0.41868	0.00021094	503.81861733473085	77.603	0.48809	77.603	77.308	77.796	0					31	17	2	0	0	0	0.1524	1	20050	20050		39.957	23.015	1	150100			24935	1445	14233	14234	31233	31233					0.11968094379415106
LPIVPQLQV	9	Unmodified	_LPIVPQLQV_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2062683105469	2	503.81841	1005.62227	0.64334	0.00032413	-0.24329	-0.00012257	0.40005	0.00020155	503.8185940980521	77.46	0.68771	77.515	77.314	78.001	0.05542					38	24	2	0	0	0	0.20651	1	20036	20036		26.884	9.9414	1	262330			24936	1445	14233	14234	31234	31234					0.11968094379415106
LPIVPQLQV	9	Unmodified	_LPIVPQLQV_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.20635986328125	2	503.81841	1005.62227	0.76515	0.00038549	-0.44835	-0.00022589	0.31679	0.00015961	503.8184622306864	77.582	0.49678	77.55	77.287	77.784	-0.031334					30	17	2	0	0	0	0.20651	1	20049	20049		26.884	14.352	1	203120			24937	1445	14233	14234	31235	31235					0.11968094379415106
LPIVRGPCRAF	11	Unmodified	_LPIVRGPCRAF_					0	0	0		ENSG00000106927|ENST00000265132|AMBP	ENSG00000106927|ENST00000265132|AMBP	ENSG00000106927|ENST00000265132|AMBP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2314453125	3	410.237621	1227.69103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.02	1	104.02	103.52	104.52	-0.0011139								0	0	0	0.37382	1	27654	27654		1.2148	0.4383	1			+	24938	2107	14234	14235	31236	31236					0.0862943540746528
LPIVTPAL	8	Unmodified	_LPIVTPAL_					0	0	0		ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2679443359375	2	412.268022	822.521491	-0.016475	-6.7922E-06	0.11619	4.79E-05	0.099712	4.1108E-05	412.26790370457036	71.045	0.89892	71.045	70.683	71.582	0					84	31	4	0	0	0	0.0093354	2	18027	18027;18079		119.03	14.718	1	3960300			24939	7294	14235	14236	31237;31238	31237					0.103130623965626
LPIVTPAL	8	Unmodified	_LPIVTPAL_					0	0	0		ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2678527832031	2	412.268022	822.521491	0.21275	8.7711E-05	-0.073737	-3.0399E-05	0.13902	5.7311E-05	412.26782285519516	70.997	1.5871	71.058	70.69	72.277	0.060783					98	57	3	0	0	0	0.013682	3	18012	17967;18012;18113		110.56	14.441	1	4036500			24940	7294	14235	14236	31239;31240;31241	31240					0.103130623965626
LPIVTPAL	8	Unmodified	_LPIVTPAL_					0	0	0		ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2679443359375	2	412.268022	822.521491	0.26841	0.00011066	-0.10956	-4.5167E-05	0.15886	6.5492E-05	412.2678089677005	71.131	1.3749	71.106	70.666	72.041	-0.024872					98	49	4	0	0	0	0.013682	4	18026	17979;18026;18075;18127		110.56	14.441	1	3673600			24941	7294	14235	14236	31242;31243;31244;31245	31243					0.103130623965626
LPIWLEARP	9	Unmodified	_LPIWLEARP_					0	0	0		ENST00000522491.1_1_5:149900611-149900977:+|nuORF	ENST00000522491.1_1_5:149900611-149900977:+|nuORF	ENST00000522491.1_1_5:149900611-149900977:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.290771484375	2	547.821484	1093.62842	0.10454	5.727E-05	-4.1666	-0.0022826	-4.0621	-0.0022253	547.8196611026059	13.101	0.25571	13.033	12.878	13.134	-0.067496					13	8	2	0	0	0	0.26251	1	285	285		0.6015	0	1	56189			24942	11499	14236	14237	31246	31246					0.08534612610924341
LPIWLEARP	9	Unmodified	_LPIWLEARP_					0	0	0		ENST00000522491.1_1_5:149900611-149900977:+|nuORF	ENST00000522491.1_1_5:149900611-149900977:+|nuORF	ENST00000522491.1_1_5:149900611-149900977:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	547.821484	1093.62842	0.088224	4.8331E-05	-3.6178	-0.0019819	-3.5296	-0.0019336	547.8198195102817	13.041	0.24651	13.041	12.9	13.147	0	0.007552	0.0001696	NaN	0.6015	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51572			24943	11499	14236	14237							0.08534612610924341
LPIYAVTV	8	Unmodified	_LPIYAVTV_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A;nc|ENSG00000117362|Q96BI3-3|APH1A;ENST00000461320.5_1_1:150238924-150239633:-|nuORF	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2652282714844	2	438.265479	874.516405	0.049869	2.1856E-05	-0.1156	-5.0665E-05	-0.065735	-2.8809E-05	438.2652125031472	68.994	0.6675	68.994	68.76	69.428	0					58	23	3	0	0	0	0.018305	2	17399	17399;17453		104.31	29.914	1	983070			24944	2790	14237	14238	31247;31248	31247					0.07412758533951092
LPIYAVTV	8	Unmodified	_LPIYAVTV_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A;nc|ENSG00000117362|Q96BI3-3|APH1A;ENST00000461320.5_1_1:150238924-150239633:-|nuORF	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.26531982421875	2	438.265479	874.516405	0.16412	7.193E-05	-0.22953	-0.0001006	-0.06541	-2.8667E-05	438.26517682305115	68.966	0.69648	69.038	68.705	69.401	0.071938					61	25	3	0	0	0	0.0093354	3	17408	17363;17408;17461		119.03	55.466	1	939450			24945	2790	14237	14238	31249;31250;31251	31250					0.07412758533951092
LPIYAVTV	8	Unmodified	_LPIYAVTV_					0	0	0		nc|ENSG00000117362|Q96BI3-2|APH1A;ENSG00000117362|ENST00000369109|APH1A;nc|ENSG00000117362|Q96BI3-3|APH1A;ENST00000461320.5_1_1:150238924-150239633:-|nuORF	nc|ENSG00000117362|Q96BI3-2|APH1A	nc|ENSG00000117362|Q96BI3-2|APH1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.2651062011719	2	438.265479	874.516405	0.048091	2.1076E-05	0.020736	9.088E-06	0.068827	3.0164E-05	438.265267102954	69.032	0.59041	69.013	68.79	69.381	-0.019157					56	20	4	0	0	0	0.018305	2	17393	17393;17447		104.31	40.748	1	1019800			24946	2790	14237	14238	31252;31253	31252					0.07412758533951092
LPKCIRAKI	9	Unmodified	_LPKCIRAKI_					0	0	0		ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.326416015625	2	521.333704	1040.65286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.716	1	70.691	70.191	71.191	-0.024872								0	0	0	0.23367	1	17924	17924		11.64	0	1				24947	1470	14238	14239	31254	31254					0.13415549492810896
LPKDDSPPF	9	Unmodified	_LPKDDSPPF_					0	0	0		FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant;ENSG00000164946|ENST00000380880|FREM1	FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant;ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.8134765625	2	508.258382	1014.50221	0.43447	0.00022082	0.46167	0.00023465	0.89614	0.00045547	508.2582747274327	58.423	0.67672	58.423	58.187	58.864	0					49	22	3	0	0	0	0.24739	1	14123	14123		8.5933	6.749	1	694190			24948	12345;5905	14239	14240	31255	31255					-0.0044593868499305245
LPKDDSPPF	9	Unmodified	_LPKDDSPPF_					0	0	0		FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant;ENSG00000164946|ENST00000380880|FREM1	FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant;ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.81341552734375	2	508.258382	1014.50221	0.32504	0.00016521	0.27424	0.00013938	0.59928	0.00030459	508.2582155601434	58.296	0.75797	58.381	58.112	58.87	0.085617					55	26	3	0	0	0	0.24739	1	14079	14079		8.5933	8.5933	1	488440			24949	12345;5905	14239	14240	31256	31256					-0.0044593868499305245
LPKDQGITL	9	Unmodified	_LPKDQGITL_					0	0	0		ENST00000564630.5_1_15:43478389-43485079:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENST00000569745.5_1_15:43477607-43487036:+|nuORF;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000563065.5_1_15:43477607-43487036:+|nuORF	ENST00000564630.5_1_15:43478389-43485079:+|nuORF	ENST00000564630.5_1_15:43478389-43485079:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.7899169921875	2	492.78985	983.565146	0.35259	0.00017375	-0.27096	-0.00013353	0.081625	4.0224E-05	492.78971099906005	43.422	0.5607	43.422	43.18	43.741	0					44	20	3	0	0	0	0.097101	1	9559	9559		42.312	9.5268	1	671560			24950	6132	14240	14241	31257	31257					0.07270627103048355
LPKDQGITL	9	Unmodified	_LPKDQGITL_					0	0	0		ENST00000564630.5_1_15:43478389-43485079:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENST00000569745.5_1_15:43477607-43487036:+|nuORF;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000563065.5_1_15:43477607-43487036:+|nuORF	ENST00000564630.5_1_15:43478389-43485079:+|nuORF	ENST00000564630.5_1_15:43478389-43485079:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.3160400390625	2	492.78985	983.565146	0.55317	0.0002726	-0.48196	-0.00023751	0.071211	3.5092E-05	492.78961043878127	43.246	0.52363	43.324	43.075	43.599	0.077515					40	18	3	0	0	0	0.18479	1	9508	9508		28.495	2.2264	1	667590			24951	6132	14240	14241	31258	31258					0.07270627103048355
LPKDQGITL	9	Unmodified	_LPKDQGITL_					0	0	0		ENST00000564630.5_1_15:43478389-43485079:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1;ENST00000569745.5_1_15:43477607-43487036:+|nuORF;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000563065.5_1_15:43477607-43487036:+|nuORF	ENST00000564630.5_1_15:43478389-43485079:+|nuORF	ENST00000564630.5_1_15:43478389-43485079:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.3161315917969	2	492.78985	983.565146	0.30522	0.00015041	-0.18226	-8.9818E-05	0.12295	6.0591E-05	492.7896643628281	43.147	0.54052	43.231	43.035	43.576	0.083996					40	19	3	0	0	0	0.14306	1	9474	9474		38.615	5.8291	1	729380			24952	6132	14240	14241	31259	31259					0.07270627103048355
LPKDSEKK	8	Unmodified	_LPKDSEKK_					0	0	0			REV__ENST00000537488.1_1_12:7048306-7050940:+|nuORF	REV__ENST00000537488.1_1_12:7048306-7050940:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2915954589844	2	472.7742	943.533846	0.059947	2.8341E-05	-0.054023	-2.5541E-05	0.0059239	2.8007E-06	472.77433104145433	29.349	0.40179	29.363	29.192	29.594	0.013474					20	13	2	0	0	0	0.32435	1	5241	5241		16.942	16.942	1	149070	+		24953	14731	14241	14242	31260	31260					0.05982054068954312
LPKDVDRTRL	10	Unmodified	_LPKDVDRTRL_					0	0	0		nc|ENSG00000163995|Q6H8Q1-4|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2;nc|ENSG00000173210|O94929-4|ABLIM3;ENST00000512594.5_1_4:7968719-8022199:-|nuORF;nc|ENSG00000163995|Q6H8Q1-8|ABLIM2;nc|ENSG00000163995|Q6H8Q1-3|ABLIM2;nc|ENSG00000173210|O94929-2|ABLIM3;nc|ENSG00000163995|Q6H8Q1-2|ABLIM2;nc|ENSG00000163995|Q6H8Q1-5|ABLIM2;nc|ENSG00000173210|O94929-3|ABLIM3;ENSG00000173210|ENST00000309868|ABLIM3	nc|ENSG00000163995|Q6H8Q1-4|ABLIM2	nc|ENSG00000163995|Q6H8Q1-4|ABLIM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.8537902832031	3	404.906816	1211.69862	-0.32434	-0.00013133	-1.4545	-0.00058894	-1.7789	-0.00072027	405.24017009524255	27.316	0.48998	27.294	27.069	27.559	-0.02141					55	16	4	0	0	0	0.31787	1	4592	4592		9.7643	0	1	248430			24954	5768	14242	14243	31261	31261					0.10123866208732579
LPKEHAASL	9	Unmodified	_LPKEHAASL_					0	0	0		nc|ENSG00000140365|Q9H0A8-2|COMMD4;ENSG00000140365|ENST00000267935|COMMD4	nc|ENSG00000140365|Q9H0A8-2|COMMD4	nc|ENSG00000140365|Q9H0A8-2|COMMD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2744140625	2	483.274367	964.53418	-0.0043732	-2.1135E-06	0.21414	0.00010349	0.20976	0.00010137	483.27430674743056	23.207	0.63451	23.207	22.845	23.48	0					48	21	3	0	0	0	0.0073901	1	3383	3383		83.429	31.799	1	298220			24955	4296	14243	14244	31262	31262					0.05049473788801606
LPKEHAASL	9	Unmodified	_LPKEHAASL_					0	0	0		nc|ENSG00000140365|Q9H0A8-2|COMMD4;ENSG00000140365|ENST00000267935|COMMD4	nc|ENSG00000140365|Q9H0A8-2|COMMD4	nc|ENSG00000140365|Q9H0A8-2|COMMD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.27423095703125	2	483.274367	964.53418	0.25657	0.00012399	-0.1108	-5.3549E-05	0.14577	7.0446E-05	483.2741133662484	23.294	0.60514	23.25	22.951	23.556	-0.044867					44	21	3	0	0	0	0.027957	1	3410	3410		61.09	24.584	1	246810			24956	4296	14243	14244	31263	31263					0.05049473788801606
LPKEHAASL	9	Unmodified	_LPKEHAASL_					0	0	0		nc|ENSG00000140365|Q9H0A8-2|COMMD4;ENSG00000140365|ENST00000267935|COMMD4	nc|ENSG00000140365|Q9H0A8-2|COMMD4	nc|ENSG00000140365|Q9H0A8-2|COMMD4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	483.274367	964.53418	0.069405	3.3541E-05	-0.11983	-5.7908E-05	-0.05042	-2.4367E-05	483.2741746361541	23.296	0.66571	23.208	22.883	23.548	-0.08761	-0.013518	-0.00011474	NaN	83.429	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270510			24957	4296	14243	14244							0.05049473788801606
LPKEMENFV	9	Oxidation (M)	_LPKEM(Oxidation (M))ENFV_		LPKEM(1)ENFV		LPKEM(58)ENFV	0	0	1		ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7788696289062	2	561.778625	1121.5427	-0.052788	-2.9655E-05	0.39906	0.00022418	0.34627	0.00019453	561.7787952279251	39.548	0.83456	39.548	39.215	40.05	0					67	30	3	0	0	0	0.037019	1	8390	8390		57.722	30.093	1	691360			24958	3853	14244	14245	31264	31264		483			-0.013213403569125148
LPKEPQGII	9	Unmodified	_LPKEPQGII_					0	0	0		ENST00000474216.5_1_1:11137420-11140866:-|nuORF;nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10	ENST00000474216.5_1_1:11137420-11140866:-|nuORF	ENST00000474216.5_1_1:11137420-11140866:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.82965087890625	2	497.800217	993.585882	0.70335	0.00035013	0.098001	4.8785E-05	0.80135	0.00039891	497.80021804596805	45.941	0.4721	45.941	45.666	46.138	0					29	16	2	0	0	0	0.19888	1	10284	10284		32.037	7.3636	1	254710			24959	6582	14245	14246	31265	31265					0.0888321748270755
LPKEPQGII	9	Unmodified	_LPKEPQGII_					0	0	0		ENST00000474216.5_1_1:11137420-11140866:-|nuORF;nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10	ENST00000474216.5_1_1:11137420-11140866:-|nuORF	ENST00000474216.5_1_1:11137420-11140866:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.8296203613281	2	497.800217	993.585882	0.32821	0.00016338	0.65445	0.00032579	0.98267	0.00048917	497.8005861967093	45.725	0.56249	45.785	45.536	46.098	0.059834					30	19	2	0	0	0	0.21026	1	10232	10232		28.495	3.8206	1	359920			24960	6582	14245	14246	31266	31266					0.0888321748270755
LPKEPQGII	9	Unmodified	_LPKEPQGII_					0	0	0		ENST00000474216.5_1_1:11137420-11140866:-|nuORF;nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10	ENST00000474216.5_1_1:11137420-11140866:-|nuORF	ENST00000474216.5_1_1:11137420-11140866:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.82977294921875	2	497.800217	993.585882	0.54911	0.00027335	0.17374	8.6486E-05	0.72284	0.00035983	497.80029895256274	45.769	0.57985	45.834	45.516	46.096	0.065048					34	20	2	0	0	0	0.21026	1	10230	10230		22.658	4.5231	1	390850			24961	6582	14245	14246	31267	31267					0.0888321748270755
LPKFPICL	8	Unmodified	_LPKFPICL_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7775573730469	2	465.777699	929.540846	0.41039	0.00019115	-0.48004	-0.00022359	-0.069647	-3.244E-05	465.7773555346748	84.58	0.86459	84.567	84.302	85.167	-0.01284					77	34	3	0	0	0	0.45169	1	22152	22152		5.2307	5.2307	1	800090	+		24962	15817	14246	14247	31268	31268					0.07325695415806877
LPKGPILLS	9	Unmodified	_LPKGPILLS_					0	0	0		ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.3063049316406	2	469.307678	936.600803	-0.092922	-4.3609E-05	0.060395	2.8344E-05	-0.032527	-1.5265E-05	469.30759215117837	61.677	1.3964	61.677	61.155	62.552	0					130	52	4	0	0	0	0.079752	3	15054	15054;15101;15254		41.84	1.3911	1	4327600			24963	3665	14247	14248	31269;31270;31271	31269					0.12996709350716174
LPKGPILLS	9	Unmodified	_LPKGPILLS_					0	0	0		ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.3060607910156	2	469.307678	936.600803	-0.25798	-0.00012107	0.24236	0.00011374	-0.015622	-7.3314E-06	469.3076543457125	61.579	1.4291	61.676	61.116	62.546	0.096985					125	52	4	0	0	0	0.079752	3	15022	15022;15057;15155		41.84	1.3911	1	4552800			24964	3665	14247	14248	31272;31273;31274	31272					0.12996709350716174
LPKGPILLS	9	Unmodified	_LPKGPILLS_					0	0	0		ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.3076477050781	2	469.307678	936.600803	-0.10212	-4.7927E-05	0.098297	4.6132E-05	-0.0038245	-1.7949E-06	469.3075685482904	61.638	1.3809	61.63	61.134	62.514	-0.0085564					130	50	4	0	0	0	0.057976	4	15175	15043;15082;15175;15225		49.933	5.7126	1	4567900			24965	3665	14247	14248	31275;31276;31277;31278	31277					0.12996709350716174
LPKGTKIV	8	Unmodified	_LPKGTKIV_					0	0	0			REV__nc|nan|Q6UWU4-3|C6orf89	REV__nc|nan|Q6UWU4-3|C6orf89	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.28662109375	2	428.286746	854.558939	0.30271	0.00012965	-0.41327	-0.000177	-0.11056	-4.7351E-05	428.28641108326696	55.788	0.64754	55.859	55.565	56.213	0.070885					48	23	3	0	0	0	0.43043	1	13385	13385		12.532	0	1	1417100	+		24966	18841	14248	14249	31279	31279					0.12584153662169228
LPKGYRLA	8	Unmodified	_LPKGYRLA_					0	0	0			REV__ENSG00000203499|ENST00000527139|IQANK1	REV__ENSG00000203499|ENST00000527139|IQANK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.25592041015625	2	459.281995	916.549437	0.16365	7.5163E-05	-0.54759	-0.0002515	-0.38394	-0.00017634	459.2816147651637	21.671	0.56705	21.622	21.237	21.804	-0.049377					28	19	2	0	0	0	0.34046	1	2853	2853		14.582	1.0738	1	57320	+		24967	18902	14249	14250	31280	31280					0.08782385376650836
LPKGYRLA	8	Unmodified	_LPKGYRLA_					0	0	0			REV__ENSG00000203499|ENST00000527139|IQANK1	REV__ENSG00000203499|ENST00000527139|IQANK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	459.281995	916.549437	0.21767	9.9972E-05	-0.68337	-0.00031386	-0.4657	-0.00021389	459.2814442097469	21.671	0.50153	21.57	21.214	21.716	-0.10034	-0.02577	-7.8588E-05	NaN	14.582	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34399	+		24968	18902	14249	14250							0.08782385376650836
LPKILDKLA	9	Unmodified	_LPKILDKLA_					0	0	0		nc|ENSG00000273540|Q96MI9|AGBL1;ENSG00000273540|ENST00000614907|AGBL1	nc|ENSG00000273540|Q96MI9|AGBL1	nc|ENSG00000273540|Q96MI9|AGBL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2669677734375	2	505.83406	1009.65357	0.6231	0.00031519	-0.43097	-0.000218	0.19213	9.7186E-05	506.33535464846847	50.931	0.31143	50.941	50.757	51.068	0.0095673					15	11	2	0	0	0	0.22674	1	11831	11831		17.113	7.039	1	105550			24969	8706	14250	14251	31281	31281					0.1491266741348909
LPKIPSNATL	10	Unmodified	_LPKIPSNATL_					0	0	0		nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3190307617188	2	527.318774	1052.623	0.90025	0.00047472	-0.18189	-9.5916E-05	0.71835	0.0003788	527.3186933551831	50.843	1.4558	50.843	50.025	51.481	0					118	53	4	0	0	0	0.00041966	2	11790	11790;11836		128.58	68.505	1	2739000			24970	1462	14251	14252	31282;31283	31282					0.09878889028482263
LPKIPSNATL	10	Unmodified	_LPKIPSNATL_					0	0	0		nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3192138671875	2	527.318774	1052.623	0.76279	0.00040223	-0.44631	-0.00023535	0.31648	0.00016689	527.3183740499812	50.82	1.3434	50.866	50.085	51.429	0.046574					119	49	4	0	0	0	0.00041966	3	11820	11774;11820;11864		128.58	68.505	1	2778200			24971	1462	14251	14252	31284;31285;31286	31285					0.09878889028482263
LPKIPSNATL	10	Unmodified	_LPKIPSNATL_					0	0	0		nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3191528320312	2	527.318774	1052.623	0.89063	0.00046964	-0.48419	-0.00025532	0.40644	0.00021432	527.3183819220218	50.855	1.4256	50.864	50.002	51.428	0.0095634					123	53	4	0	0	0	2.8213E-05	3	11828	11784;11828;11879		139.38	70.273	1	3115800			24972	1462	14251	14252	31287;31288;31289	31288					0.09878889028482263
LPKKAGDI	8	Unmodified	_LPKKAGDI_					0	0	0		chr4:87810764-87811362|288|10.07|0.31|5.04|+|0|IBSP,IBSP|1;ENSG00000029559|ENST00000226284|IBSP	chr4:87810764-87811362|288|10.07|0.31|5.04|+|0|IBSP,IBSP|1	chr4:87810764-87811362|288|10.07|0.31|5.04|+|0|IBSP,IBSP|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.2616882324219	2	421.260728	840.506903	0.42805	0.00018032	-1.926	-0.00081137	-1.498	-0.00063105	421.2598473563522	77.391	1.0579	77.359	76.754	77.812	-0.031334					86	38	3	0	0	0	0.32886	1	19887	19887		15.847	0	1	567260			24973	165	14252	14253	31290	31290					0.08026990248424681
LPKKEARTR	9	Unmodified	_LPKKEARTR_					0	0	0		POLR3H|p.P183Rfs*61|1|0.42|ENSG00000100413|chr22:41530700-41530700|G/-|frameshift_variant	POLR3H|p.P183Rfs*61|1|0.42|ENSG00000100413|chr22:41530700-41530700|G/-|frameshift_variant	POLR3H|p.P183Rfs*61|1|0.42|ENSG00000100413|chr22:41530700-41530700|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7644653320312	2	549.840739	1097.66693	0.26923	0.00014803	-0.13271	-7.2969E-05	0.13652	7.5065E-05	549.8406962691021	18.217	0.57176	18.217	17.991	18.563	0					39	19	3	0	0	0	0.25706	1	1886	1886		6.7232	0	1	96339			24974	13051	14253	14254	31291	31291					0.1219991824546014
LPKKEGLSF	9	Unmodified	_LPKKEGLSF_					0	0	0		nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.79931640625	2	509.800217	1017.58588	0.72409	0.00036914	-0.79239	-0.00040396	-0.068297	-3.4818E-05	509.7996707990966	33.96	0.41069	33.96	33.753	34.164	0					26	14	2	0	0	0	0.053988	1	6643	6643		51.415	3.8208	1	385210			24975	5248	14254	14255	31292	31292					0.07779217482720924
LPKKEGLSF	9	Unmodified	_LPKKEGLSF_					0	0	0		nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.79931640625	2	509.800217	1017.58588	0.87797	0.00044759	-0.54209	-0.00027636	0.33588	0.00017123	509.799823981393	33.733	0.5535	33.799	33.65	34.203	0.06636					27	19	2	0	0	0	0.020233	1	6601	6601		63.961	0	1	258550			24976	5248	14254	14255	31293	31293					0.07779217482720924
LPKKEGLSF	9	Unmodified	_LPKKEGLSF_					0	0	0		nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.79937744140625	2	509.800217	1017.58588	0.11777	6.0039E-05	0.29596	0.00015088	0.41373	0.00021092	509.8002252790286	33.772	0.46985	33.839	33.657	34.127	0.066704					36	16	3	0	0	0	0.01909	1	6589	6589		65.474	9.9709	1	280700			24977	5248	14254	14255	31294	31294					0.07779217482720924
LPKKEPLL	8	Unmodified	_LPKKEPLL_					0	0	0			REV__nc|ENSG00000164512|Q3KP44-3|ANKRD55	REV__nc|ENSG00000164512|Q3KP44-3|ANKRD55	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.3076171875	2	469.307678	936.600803	-0.10212	-4.7927E-05	0.098297	4.6132E-05	-0.0038245	-1.7949E-06	469.3075685482904	61.638	1.3809	61.63	61.134	62.514	-0.0085564					130	50	4	0	0	0	0.13814	1	15130	15130		53.833	3.8998	1	4567900	+		24978	17164	14255	14256	31295	31295					0.12996709350693436
LPKKFIATI	9	Unmodified	_LPKKFIATI_					0	0	0		MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant;nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.8367309570312	2	515.836603	1029.65865	0.12249	6.3185E-05	0.29925	0.00015436	0.42174	0.00021755	515.8367214178148	43.09	0.73236	43.174	42.871	43.604	0.083996					59	26	3	0	0	0	0.020233	1	9431	9431		63.961	33.324	1	751490			24979	5508	14256	14257	31296	31296					0.14500971276129349
LPKKFIATI	9	Unmodified	_LPKKFIATI_					0	0	0		MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant;nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	515.836603	1029.65865	0.40253	0.00020764	0.0522	2.6927E-05	0.45473	0.00023456	515.8365552646445	43.107	0.60081	43.188	42.917	43.518	0.080414	-0.037326	-2.307E-05	NaN	63.961	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	749860			24980	5508	14256	14257							0.14500971276129349
LPKKNGLYL	9	Unmodified	_LPKKNGLYL_					0	0	0		ENSG00000188735|ENST00000449592|TMEM120B;nc|ENSG00000189077|Q9BXJ8-2|TMEM120A;ENSG00000189077|ENST00000493111|TMEM120A	ENSG00000188735|ENST00000449592|TMEM120B;nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2805786132812	2	523.32386	1044.63317	0.81914	0.00042867	-0.30254	-0.00015832	0.5166	0.00027035	523.3236234247569	33.796	0.4854	33.796	33.589	34.074	0					31	17	2	0	0	0	0.12743	1	6628	6628		37.974	19.828	1	279190			24981	7770;7800	14257	14258	31297	31297					0.1126349675369056
LPKKNGLYL	9	Unmodified	_LPKKNGLYL_					0	0	0		ENSG00000188735|ENST00000449592|TMEM120B;nc|ENSG00000189077|Q9BXJ8-2|TMEM120A;ENSG00000189077|ENST00000493111|TMEM120A	ENSG00000188735|ENST00000449592|TMEM120B;nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2805786132812	2	523.32386	1044.63317	0.96011	0.00050245	-0.37843	-0.00019804	0.58168	0.00030441	523.323493120701	33.671	0.50114	33.737	33.538	34.04	0.06636					30	17	2	0	0	0	0.1524	1	6579	6579		32.305	19.263	1	264980			24982	7770;7800	14257	14258	31298	31298					0.1126349675369056
LPKKNGLYL	9	Unmodified	_LPKKNGLYL_					0	0	0		ENSG00000188735|ENST00000449592|TMEM120B;nc|ENSG00000189077|Q9BXJ8-2|TMEM120A;ENSG00000189077|ENST00000493111|TMEM120A	ENSG00000188735|ENST00000449592|TMEM120B;nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2805786132812	2	523.32386	1044.63317	0.30232	0.00015821	0.30022	0.00015711	0.60254	0.00031532	523.3238739141071	33.656	0.54985	33.723	33.522	34.071	0.066704					31	19	2	0	0	0	0.1854	1	6577	6577		32.305	15.193	1	266840			24983	7770;7800	14257	14258	31299	31299					0.1126349675369056
LPKKPCAF	8	Unmodified	_LPKKPCAF_					0	0	0			REV__ENST00000325599.12_1_3:72891496-72893545:-|nuORF	REV__ENST00000325599.12_1_3:72891496-72893545:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7587890625	2	452.259674	902.504795	0.30686	0.00013878	0.049726	2.2489E-05	0.35659	0.00016127	452.25968969136494	63.516	0.67819	63.612	63.311	63.989	0.095722					37	23	2	0	0	0	0.34147	1	15740	15740		11.114	11.114	1	170000	+		24984	19999	14258	14259	31300	31300					0.04964238238949292
LPKKPCAF	8	Unmodified	_LPKKPCAF_					0	0	0			REV__ENST00000325599.12_1_3:72891496-72893545:-|nuORF	REV__ENST00000325599.12_1_3:72891496-72893545:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7584228515625	2	452.259674	902.504795	0.24381	0.00011027	0.48794	0.00022068	0.73175	0.00033094	452.2599106055325	62.979	0.51095	63.075	62.905	63.416	0.095722					29	18	2	0	0	0	0.33995	1	15622	15622		10.183	4.423	1	140660	+		24985	19999	14258	14259	31301	31301					0.04964238238949292
LPKKPSKLEL	10	Unmodified	_LPKKPSKLEL_					0	0	0		ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8715209960938	2	576.871174	1151.72779	0.31453	0.00018144	0.41718	0.00024066	0.7317	0.0004221	576.871467237104	30.706	0.4262	30.734	30.47	30.896	0.027946					19	14	2	0	0	0	0.34155	1	5678	5678		14.218	4.6742	1	106160			24986	3701	14259	14260	31302	31302					0.1580001050501778
LPKKPSKLEL	10	Unmodified	_LPKKPSKLEL_					0	0	0		ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	576.871174	1151.72779	0.23533	0.00013576	0.15356	8.8582E-05	0.38889	0.00022434	576.8712776388714	30.77	0.49952	30.77	30.448	30.948	0	0.018115	-0.00016018	NaN	14.218	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85029			24987	3701	14259	14260							0.1580001050501778
LPKKVWVL	8	Unmodified	_LPKKVWVL_					0	0	0		ENST00000494513.1_1_6:160148641-160157384:+|nuORF	ENST00000494513.1_1_6:160148641-160157384:+|nuORF	ENST00000494513.1_1_6:160148641-160157384:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.61224365234375	2	491.826038	981.637523	0.8708	0.00042828	-0.27634	-0.00013591	0.59445	0.00029237	491.8259916378865	50.201	0.18375	50.222	50.177	50.361	0.020691					11	6	2	0	0	0	0.34092	1	11638	11638		8.5933	8.5933	1	69025			24988	11208	14260	14261	31303	31303					0.1459700596726634
LPKLKPIISD	10	Unmodified	_LPKLKPIISD_					0	0	0		nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3448486328125	2	562.357899	1122.70125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.81	1	112.82	112.32	113.32	0.014824								0	0	0	0.38202	1	29352	29352		0.40072	0	1				24989	6313	14261	14262	31304	31304					0.14480321613700653
LPKLYVKL	8	Unmodified	_LPKLYVKL_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;ENST00000480579.2_1_8:119774141-119774438:-|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.3258056640625	2	487.325871	972.637189	0.40057	0.00019521	-0.10949	-5.3358E-05	0.29108	0.00014185	487.3256713328492	53.608	0.73143	53.598	53.305	54.036	-0.0096054					54	27	3	0	0	0	0.050146	1	12668	12668		78.149	17.76	1	727290			24990	7993	14262	14263	31305	31305					0.14977586247414365
LPKLYVKL	8	Unmodified	_LPKLYVKL_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;ENST00000480579.2_1_8:119774141-119774438:-|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	487.325871	972.637189	0.43796	0.00021343	-0.078742	-3.8373E-05	0.35921	0.00017505	487.3257387514176	53.484	0.5471	53.484	53.311	53.858	0	-0.052412	-2.7269E-05	NaN	78.149	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	895580			24991	7993	14262	14263							0.14977586247414365
LPKLYVKL	8	Unmodified	_LPKLYVKL_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;ENST00000480579.2_1_8:119774141-119774438:-|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	487.325871	972.637189	0.20526	0.00010003	0.038364	1.8696E-05	0.24362	0.00011872	487.32577947245915	53.471	0.65453	53.527	53.325	53.98	0.056259	-0.0094532	8.6868E-05	NaN	78.149	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	885350			24992	7993	14262	14263							0.14977586247414365
LPKNAALKL	9	Unmodified	_LPKNAALKL_					0	0	0		ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7852478027344	2	484.318577	966.622602	-0.11852	-5.7401E-05	0.16697	8.0868E-05	0.048453	2.3467E-05	484.3183885192713	13.005	0.2733	13.005	12.9	13.174	0					15	9	2	0	0	0	0.25988	1	292	292		3.9444	1.6417	1	8186.9			24993	6263	14263	14264	31306	31306					0.13795514099251704
LPKNDVESF	9	Unmodified	_LPKNDVESF_					0	0	0			REV__ENSG00000114933|ENST00000403263|INO80D	REV__ENSG00000114933|ENST00000403263|INO80D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3109130859375	2	524.769114	1047.52368	0.40744	0.00021381	-2.6518	-0.0013916	-2.2444	-0.0011778	525.268627719045	73.926	0.11409	73.896	73.796	73.91	-0.030655					5	3	2	0	0	0	0.24311	1	18899	18899		11.64	2.2929	1	136470	+		24994	14855	14264	14265	31307	31307					0.001814463437312952
LPKNEIIHLY	10	Unmodified	_LPKNEIIHLY_					0	0	0			REV__nc|ENSG00000116120|Q9NSD9-2|FARSB	REV__nc|ENSG00000116120|Q9NSD9-2|FARSB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.7608642578125	3	413.908046	1238.70231	0.56776	0.000235	-0.31136	-0.00012887	0.2564	0.00010613	413.9078629347886	50.924	0.59898	50.934	50.647	51.246	0.0095634					56	22	3	0	0	0	0.27735	1	11795	11795		31.636	1.2043	1	913280	+		24995	14910	14265	14266	31308	31308					0.0925053598264185
LPKNGCHA	8	Unmodified	_LPKNGCHA_					0	0	0			REV__ENST00000599987.1_1_19:51519093-51520532:-|nuORF	REV__ENST00000599987.1_1_19:51519093-51520532:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2227783203125	2	420.213255	838.411957	0.52324	0.00021987	-1.0653	-0.00044766	-0.54207	-0.00022779	420.21271253111166	77.569	0.77116	77.537	77.237	78.008	-0.031334					39	27	2	0	0	0	0.43727	1	20058	20058		10.183	0	1	327950	+		24996	15415	14266	14267	31309	31309					-0.013712664944250719
LPKNGCHA	8	Unmodified	_LPKNGCHA_					0	0	0			REV__ENST00000599987.1_1_19:51519093-51520532:-|nuORF	REV__ENST00000599987.1_1_19:51519093-51520532:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	420.213255	838.411957	0.27474	0.00011545	-0.82057	-0.00034482	-0.54583	-0.00022937	420.2128498584655	77.491	0.69742	77.491	77.282	77.979	0	-0.029432	6.8378E-05	NaN	10.183	41	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313450	+		24997	15415	14266	14267							-0.013712664944250719
LPKNGCHA	8	Unmodified	_LPKNGCHA_					0	0	0			REV__ENST00000599987.1_1_19:51519093-51520532:-|nuORF	REV__ENST00000599987.1_1_19:51519093-51520532:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	420.213255	838.411957	0.52324	0.00021987	-1.0653	-0.00044766	-0.54207	-0.00022779	420.21271253111166	77.569	0.77116	77.537	77.237	78.008	-0.031334	0.016622	-0.00013731	NaN	10.183	39	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327950	+		24998	15415	14266	14267							-0.013712664944250719
LPKNNPPTI	9	Unmodified	_LPKNNPPTI_					0	0	0		ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-3|TOM1;nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7584533691406	2	497.290017	992.565481	0.50022	0.00024876	-0.57343	-0.00028516	-0.07321	-3.6406E-05	497.29011957168143	33.551	0.82602	33.551	33.065	33.891	0					43	29	2	0	0	0	0.059216	1	6531	6531		60.074	0	1	607480			24999	1557	14267	14268	31310	31310					0.06890046822900331
LPKNNPPTI	9	Unmodified	_LPKNNPPTI_					0	0	0		ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-3|TOM1;nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7587890625	2	497.290017	992.565481	0.6059	0.00030131	-0.2732	-0.00013586	0.3327	0.00016545	497.29013001141055	33.423	0.80071	33.49	33.013	33.814	0.06636					44	28	2	0	0	0	0.0033458	1	6494	6494		99.755	0	1	687200			25000	1557	14267	14268	31311	31311					0.06890046822900331
LPKNNPPTI	9	Unmodified	_LPKNNPPTI_					0	0	0		ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-3|TOM1;nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	ENST00000404284.6_1_22:35717823-35727385:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7586364746094	2	497.290017	992.565481	0.18776	9.3374E-05	-0.79012	-0.00039292	-0.60236	-0.00029955	497.2897412238878	33.434	0.4941	33.501	33.245	33.739	0.0667					37	17	3	0	0	0	0.075169	1	6483	6483		53.833	0	1	609660			25001	1557	14267	14268	31312	31312					0.06890046822900331
LPKNPDLRI	9	Unmodified	_LPKNPDLRI_					0	0	0		nc|ENSG00000163636|Q15008-4|PSMD6;ENSG00000163636|ENST00000295901|PSMD6;ENST00000475036.1_1_3:64008918-64009122:-|nuORF	nc|ENSG00000163636|Q15008-4|PSMD6	nc|ENSG00000163636|Q15008-4|PSMD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3253173828125	2	533.324391	1064.63423	0.14668	7.8229E-05	1.6612	0.00088595	1.8079	0.00096417	533.325172955798	39.419	0.56151	39.419	39.242	39.803	0					32	20	2	0	0	0	0.017549	1	8353	8353		67.838	29.687	1	338250			25002	12799	14268	14269	31313	31313					0.10449711122601002
LPKNPDLRI	9	Unmodified	_LPKNPDLRI_					0	0	0		nc|ENSG00000163636|Q15008-4|PSMD6;ENSG00000163636|ENST00000295901|PSMD6;ENST00000475036.1_1_3:64008918-64009122:-|nuORF	nc|ENSG00000163636|Q15008-4|PSMD6	nc|ENSG00000163636|Q15008-4|PSMD6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	533.324391	1064.63423	0.18664	9.954E-05	1.1944	0.000637	1.381	0.00073654	533.324921280005	39.346	0.4612	39.439	39.201	39.662	0.09267	0.019718	-0.00016743	NaN	67.838	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	468370			25003	12799	14268	14269							0.10449711122601002
LPKNPDLRI	9	Unmodified	_LPKNPDLRI_					0	0	0		nc|ENSG00000163636|Q15008-4|PSMD6;ENSG00000163636|ENST00000295901|PSMD6;ENST00000475036.1_1_3:64008918-64009122:-|nuORF	nc|ENSG00000163636|Q15008-4|PSMD6	nc|ENSG00000163636|Q15008-4|PSMD6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	533.324391	1064.63423	0.51857	0.00027657	1.2985	0.00069251	1.8171	0.00096908	533.3249515454087	39.301	0.52111	39.4	39.184	39.705	0.099407	-0.019025	-5.6405E-05	NaN	67.838	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	456830			25004	12799	14268	14269							0.10449711122601002
LPKNPSVVF	9	Unmodified	_LPKNPSVVF_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;FRYL|p.E2601Dfs*12|1|0.03|ENSG00000075539|chr4:48515162-48515163|-/TACTTTCA|frameshift_variant	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7220458984375	2	500.794935	999.575317	0.48773	0.00024425	-0.48978	-0.00024528	-0.0020507	-1.027E-06	500.7947767734967	48.691	0.83908	48.691	48.156	48.995	0					58	29	3	0	0	0	0.12329	1	11171	11171		49.554	26.406	1	828100			25005	1048	14269	14270	31314	31314					0.07551234828281395
LPKNPSVVF	9	Unmodified	_LPKNPSVVF_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;FRYL|p.E2601Dfs*12|1|0.03|ENSG00000075539|chr4:48515162-48515163|-/TACTTTCA|frameshift_variant	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7221374511719	2	500.794935	999.575317	0.59865	0.0002998	-0.74071	-0.00037094	-0.14206	-7.1144E-05	500.79460862323003	48.659	0.91599	48.703	48.073	48.989	0.044888					53	33	3	0	0	0	0.11234	1	11163	11163		51.63	28.481	1	862330			25006	1048	14269	14270	31315	31315					0.07551234828281395
LPKNPSVVF	9	Unmodified	_LPKNPSVVF_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;FRYL|p.E2601Dfs*12|1|0.03|ENSG00000075539|chr4:48515162-48515163|-/TACTTTCA|frameshift_variant	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7951354980469	2	500.794935	999.575317	0.42667	0.00021367	-0.67626	-0.00033867	-0.24959	-0.00012499	500.79474925480025	48.646	0.69699	48.678	48.232	48.929	0.032043					50	25	3	0	0	0	0.088443	1	11179	11179		39.95	9.3132	1	752200			25007	1048	14269	14270	31316	31316					0.07551234828281395
LPKPLNAPNV	10	Unmodified	_LPKPLNAPNV_					0	0	0		nc|ENSG00000120156|Q02763-3|TEK;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK	nc|ENSG00000120156|Q02763-3|TEK	nc|ENSG00000120156|Q02763-3|TEK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8167114257812	2	531.818941	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.808	1	85.893	85.393	86.393	0.084251								0	0	0	0.36787	1	22549	22549		7.2892	1.5574	1				25008	2930	14270	14271	31317	31317					0.09498308748311501
LPKPPGRGV	9	Unmodified	_LPKPPGRGV_					0	0	0		ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.787353515625	2	460.787444	919.560336	-0.10993	-5.0654E-05	0.23251	0.00010714	0.12258	5.6485E-05	460.7874724029456	26.126	1.6657	26.126	25.035	26.701	0					120	57	3	0	0	0	0.14076	2	4241	4241;4284		32.305	7.6316	1	721320			25009	7288	14271	14272	31318;31319	31318					0.09733787750951706
LPKPPGRGV	9	Unmodified	_LPKPPGRGV_					0	0	0		ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.7873840332031	2	460.787444	919.560336	-0.12122	-5.5855E-05	0.18209	8.3906E-05	0.060876	2.8051E-05	460.78742344646133	26.06	1.9226	26.022	24.797	26.72	-0.038671					135	67	3	0	0	0	0.10197	3	4252	4205;4252;4304		37.974	13.3	1	762240			25010	7288	14271	14272	31320;31321;31322	31321					0.09733787750951706
LPKPPGRGV	9	Unmodified	_LPKPPGRGV_					0	0	0		ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.78753662109375	2	460.787444	919.560336	0.096838	4.4622E-05	0.007146	3.2928E-06	0.10398	4.7915E-05	460.7873577764137	26.101	1.7079	26.079	24.962	26.67	-0.022236					125	60	4	0	0	0	0.10197	2	4239	4239;4288		37.974	13.3	1	680480			25011	7288	14271	14272	31323;31324	31323					0.09733787750951706
LPKPRVSSL	9	Unmodified	_LPKPRVSSL_					0	0	0		ENSG00000198173|ENST00000358047|FAM47C	ENSG00000198173|ENST00000358047|FAM47C	ENSG00000198173|ENST00000358047|FAM47C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8139343261719	2	498.813659	995.612765	0.40318	0.00020111	-0.13839	-6.9033E-05	0.26479	0.00013208	498.81349122323775	51.974	0.92395	52.025	51.758	52.682	0.050571					56	33	3	0	0	0	0.17242	1	12198	12198		17.113	0	1	395250			25012	8046	14272	14273	31325	31325					0.114783260938907
LPKPRVSSL	9	Unmodified	_LPKPRVSSL_					0	0	0		ENSG00000198173|ENST00000358047|FAM47C	ENSG00000198173|ENST00000358047|FAM47C	ENSG00000198173|ENST00000358047|FAM47C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.813659	995.612765	0.14601	7.2833E-05	0.11247	5.6102E-05	0.25848	0.00012893	498.81358562161705	52.047	0.73153	52.046	51.764	52.495	-0.00080872	0.00065544	8.9799E-05	NaN	17.113	62	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	448330			25013	8046	14272	14273							0.114783260938907
LPKQPPLAL	9	Unmodified	_LPKQPPLAL_					0	0	0		nc|ENSG00000010017|Q96S59-3|RANBP9;ENSG00000010017|ENST00000011619|RANBP9;ENST00000469916.1_1_6:13622596-13632772:-|nuORF;nc|ENSG00000010017|Q96S59-2|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.8134765625	2	488.813128	975.611703	0.6134	0.00029984	-0.62951	-0.00030771	-0.016115	-7.8772E-06	488.81292033359205	50.995	1.1843	50.995	50.381	51.565	0					132	43	4	0	0	0	0.00010798	2	11851	11805;11851		139.54	57.931	1	4981700			25014	413	14273	14274	31326;31327	31327					0.1229211172496889
LPKQPPLAL	9	Unmodified	_LPKQPPLAL_					0	0	0		nc|ENSG00000010017|Q96S59-3|RANBP9;ENSG00000010017|ENST00000011619|RANBP9;ENST00000469916.1_1_6:13622596-13632772:-|nuORF;nc|ENSG00000010017|Q96S59-2|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.813232421875	2	488.813128	975.611703	0.49901	0.00024392	-0.4099	-0.00020036	0.089109	4.3558E-05	488.81294768862296	50.974	1.1803	51.02	50.492	51.672	0.046574					114	43	4	0	0	0	0.0032391	2	11801	11801;11845		100.37	39.014	1	5015400			25015	413	14273	14274	31328;31329	31328					0.1229211172496889
LPKQPPLAL	9	Unmodified	_LPKQPPLAL_					0	0	0		nc|ENSG00000010017|Q96S59-3|RANBP9;ENSG00000010017|ENST00000011619|RANBP9;ENST00000469916.1_1_6:13622596-13632772:-|nuORF;nc|ENSG00000010017|Q96S59-2|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.81341552734375	2	488.813128	975.611703	0.59523	0.00029096	-0.32874	-0.00016069	0.26649	0.00013026	488.8130277801078	50.977	1.1066	50.986	50.454	51.561	0.0095673					124	41	4	0	0	0	0.0017972	3	11839	11792;11839;11884		112.59	37.664	1	5090400			25016	413	14273	14274	31330;31331;31332	31331					0.1229211172496889
LPKSDLIKT	9	Unmodified	_LPKSDLIKT_					0	0	0		ENSG00000163833|ENST00000338040|FBXO40	ENSG00000163833|ENST00000338040|FBXO40	ENSG00000163833|ENST00000338040|FBXO40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3018798828125	2	507.813325	1013.6121	0.27807	0.00014121	-0.1031	-5.2355E-05	0.17497	8.8855E-05	507.8131978686655	52.09	1.015	52.09	51.809	52.824	0					88	36	5	0	0	0	0.25989	1	12285	12285		14.838	2.3067	1	1079400			25017	5743	14274	14275	31333	31333					0.10583486654184071
LPKSDLIKT	9	Unmodified	_LPKSDLIKT_					0	0	0		ENSG00000163833|ENST00000338040|FBXO40	ENSG00000163833|ENST00000338040|FBXO40	ENSG00000163833|ENST00000338040|FBXO40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3020935058594	2	507.813325	1013.6121	0.31332	0.00015911	-0.15975	-8.1124E-05	0.15357	7.7984E-05	507.81319575741236	52.041	0.82119	52.091	51.758	52.579	0.050575					70	29	4	0	0	0	0.25989	1	12262	12262		14.838	2.3067	1	1233200			25018	5743	14274	14275	31334	31334					0.10583486654184071
LPKSERRPLL	10	Unmodified	_LPKSERRPLL_					0	0	0		ENST00000372324.5_1_1:44444922-44446927:+|nuORF;ENST00000497866.5_1_1:44444922-44446927:+|nuORF	ENST00000372324.5_1_1:44444922-44446927:+|nuORF	ENST00000372324.5_1_1:44444922-44446927:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.5872497558594	3	403.587307	1207.74009	-0.11385	-4.5947E-05	0.21995	8.8769E-05	0.1061	4.2822E-05	403.5873354139402	31.903	1.1049	31.903	31.202	32.307	0					59	39	2	0	0	0	0.31256	1	5992	5992		13.519	5.0744	1	1344600			25019	9837	14275	14276	31335	31335					0.14453046968083072
LPKSERRPLL	10	Unmodified	_LPKSERRPLL_					0	0	0		ENST00000372324.5_1_1:44444922-44446927:+|nuORF;ENST00000497866.5_1_1:44444922-44446927:+|nuORF	ENST00000372324.5_1_1:44444922-44446927:+|nuORF	ENST00000372324.5_1_1:44444922-44446927:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.5871887207031	3	403.587307	1207.74009	-0.14017	-5.6571E-05	0.25099	0.0001013	0.11082	4.4725E-05	403.5873239525643	31.786	1.2236	31.829	31.024	32.247	0.042366					81	43	3	0	0	0	0.31256	1	5971	5971		13.519	1.8873	1	1321900			25020	9837	14275	14276	31336	31336					0.14453046968083072
LPKSHPPTK	9	Unmodified	_LPKSHPPTK_					0	0	0			REV__ENST00000592621.5_2_19:5927995-5941693:-|nuORF	REV__ENST00000592621.5_2_19:5927995-5941693:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.28155517578125	2	502.798009	1003.58147	0.70727	0.00035561	-1.057	-0.00053146	-0.34973	-0.00017584	502.797474054906	37.518	0.50448	37.518	37.342	37.846	0					28	17	2	0	0	0	0.2322	1	7726	7726		20.454	0	1	218400	+		25021	22573	14276	14277	31337	31337					0.07981753059800667
LPKSPPYTAF	10	Unmodified	_LPKSPPYTAF_					0	0	0		ENST00000432307.1_1_X:110864088-110864580:-|nuORF;nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B	ENST00000432307.1_1_X:110864088-110864580:-|nuORF	ENST00000432307.1_1_X:110864088-110864580:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8057861328125	2	560.8055	1119.59645	0.6324	0.00035466	-0.21949	-0.00012309	0.41292	0.00023157	560.8054030942536	50.896	1.6153	50.896	49.976	51.592	0					159	59	4	0	0	0	0.00015406	2	11860	11809;11860		132.13	86.435	1	3218800			25022	770	14277	14278	31338;31339	31339					0.04143200137127678
LPKSPPYTAF	10	Unmodified	_LPKSPPYTAF_					0	0	0		ENST00000432307.1_1_X:110864088-110864580:-|nuORF;nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B	ENST00000432307.1_1_X:110864088-110864580:-|nuORF	ENST00000432307.1_1_X:110864088-110864580:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8057250976562	2	560.8055	1119.59645	0.63254	0.00035473	-0.32228	-0.00018074	0.31026	0.000174	560.8053825136385	50.941	1.5257	50.987	50.035	51.561	0.046574					163	56	4	0	0	0	2.2048E-05	2	11857	11857;11905		143.21	93.28	1	3375100			25023	770	14277	14278	31340;31341	31340					0.04143200137127678
LPKSPPYTAF	10	Unmodified	_LPKSPPYTAF_					0	0	0		ENST00000432307.1_1_X:110864088-110864580:-|nuORF;nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B	ENST00000432307.1_1_X:110864088-110864580:-|nuORF	ENST00000432307.1_1_X:110864088-110864580:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8058471679688	2	560.8055	1119.59645	0.58168	0.00032621	-0.17979	-0.00010082	0.4019	0.00022538	560.8054717101694	50.975	1.663	50.985	49.978	51.641	0.0095673					174	62	4	0	0	0	0.00015406	2	11868	11823;11868		132.13	90.295	1	3381700			25024	770	14277	14278	31342;31343	31343					0.04143200137127678
LPKSPRDTVLK	11	Unmodified	_LPKSPRDTVLK_					0	0	0		ENST00000173229.6_1_17:9144472-9144925:+|nuORF	ENST00000173229.6_1_17:9144472-9144925:+|nuORF	ENST00000173229.6_1_17:9144472-9144925:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.8887939453125	2	627.382437	1252.75032	-0.03381	-2.1212E-05	-0.44458	-0.00027892	-0.47839	-0.00030013	627.3817675327402	103.2	0.67025	103.2	102.88	103.55	0					238	97	3	0	0	0	0.33175	1	27373	27373		4.897	1.9018	1	27440000			25025	8787	14278	14279	31344	31344					0.13405609902633842
LPKTGTVSL	9	Unmodified	_LPKTGTVSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2790222167969	2	458.279118	914.543683	-0.18086	-8.2882E-05	0.30421	0.00013941	0.12335	5.6531E-05	458.2790864722734	39.796	0.62183	39.796	39.54	40.161	0					50	22	3	0	0	0	0.04299	1	8424	8424		55.503	9.4818	1	537710			25026	6378	14279	14280	31345	31345					0.08299242074338053
LPKTTALEL	9	Unmodified	_LPKTTALEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.3001708984375	2	493.30005	984.585547	0.52005	0.00025654	0.05846	2.8838E-05	0.57851	0.00028538	493.3000076890778	49.253	0.92336	49.253	48.944	49.868	0					103	33	4	0	0	0	0.0016724	3	11350	11305;11350;11396		114.19	45.082	1	3281600			25027	5388	14280	14281	31346;31347;31348	31347					0.09263797762832837
LPKTTALEL	9	Unmodified	_LPKTTALEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.30029296875	2	493.30005	984.585547	0.35415	0.0001747	0.2396	0.0001182	0.59375	0.0002929	493.3001091592559	49.269	0.96523	49.314	49.016	49.981	0.044891					94	35	4	0	0	0	0.0028032	3	11343	11299;11343;11390		103.82	41.251	1	3543200			25028	5388	14280	14281	31349;31350;31351	31350					0.09263797762832837
LPKTTALEL	9	Unmodified	_LPKTTALEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.30029296875	2	493.30005	984.585547	0.21479	0.00010595	0.30187	0.00014891	0.51666	0.00025487	493.3001445662869	49.238	0.99637	49.27	48.954	49.951	0.032043					101	35	5	0	0	0	0.0028542	4	11324	11281;11324;11368;11397		103.42	34.315	1	3326300			25029	5388	14280	14281	31352;31353;31354;31355	31353					0.09263797762832837
LPKVLEAVKTI	11	Unmodified	_LPKVLEAVKTI_					0	0	0			REV__ENST00000272227.7_1_2:10933301-10937275:-|nuORF	REV__ENST00000272227.7_1_2:10933301-10937275:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.2523193359375	3	404.26383	1209.76966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.075	1	63.075	62.575	63.575	0								0	0	0	0.34052	1	15600	15600		10.315	5.2677	1		+		25030	19678	14281	14282	31356	31356					0.1731656619356272
LPKVLEAVKTI	11	Unmodified	_LPKVLEAVKTI_					0	0	0			REV__ENST00000272227.7_1_2:10933301-10937275:-|nuORF	REV__ENST00000272227.7_1_2:10933301-10937275:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.25225830078125	3	404.26383	1209.76966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.005	1	63.101	62.601	63.601	0.095722								0	0	0	0.35543	1	15571	15571		7.0371	1.9896	1		+		25031	19678	14281	14282	31357	31357					0.1731656619356272
LPKVLEAVKTI	11	Unmodified	_LPKVLEAVKTI_					0	0	0			REV__ENST00000272227.7_1_2:10933301-10937275:-|nuORF	REV__ENST00000272227.7_1_2:10933301-10937275:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2521667480469	3	404.26383	1209.76966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.105	1	63.097	62.597	63.597	-0.0085526								0	0	0	0.35543	1	15599	15599		7.0371	1.9896	1		+		25032	19678	14281	14282	31358	31358					0.1731656619356272
LPKVLEAVKTI	11	Unmodified	_LPKVLEAVKTI_					0	0	0			REV__ENST00000272227.7_1_2:10933301-10937275:-|nuORF	REV__ENST00000272227.7_1_2:10933301-10937275:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2521667480469	3	404.26383	1209.76966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.602	1	63.593	63.093	64.093	-0.0085526								0	0	0	0.34052	1	15750	15750		10.315	3.6918	1		+		25033	19678	14281	14282	31359	31359					0.1731656619356272
LPKVLEAVKTI	11	Unmodified	_LPKVLEAVKTI_					0	0	0			REV__ENST00000272227.7_1_2:10933301-10937275:-|nuORF	REV__ENST00000272227.7_1_2:10933301-10937275:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2522888183594	3	404.26383	1209.76966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.763	1	63.753	63.253	64.253	-0.0093842								0	0	0	0.34052	1	15800	15800		10.315	3.6918	1		+		25034	19678	14281	14282	31360	31360					0.1731656619356272
LPKVLEAVKTI	11	Unmodified	_LPKVLEAVKTI_					0	0	0			REV__ENST00000272227.7_1_2:10933301-10937275:-|nuORF	REV__ENST00000272227.7_1_2:10933301-10937275:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2522888183594	3	404.26383	1209.76966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.926	1	63.916	63.416	64.416	-0.0095329								0	0	0	0.3513	1	15850	15850		7.9454	3.2295	1		+		25035	19678	14281	14282	31361	31361					0.1731656619356272
LPKVVKEGV	9	Unmodified	_LPKVVKEGV_					0	0	0			REV__nc|ENSG00000182253|O15061-2|SYNM	REV__nc|ENSG00000182253|O15061-2|SYNM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.8035583496094	2	484.810585	967.606617	0.14396	6.9796E-05	1.8599	0.00090169	2.0039	0.00097149	484.81101857088754	33.142	0.22121	33.197	33.091	33.312	0.055309					13	7	2	0	0	0	0.1939	1	6372	6372		24.021	0	1	127380	+		25036	18185	14282	14283	31362	31362					0.12151807862380792
LPKWLVLE	8	Unmodified	_LPKWLVLE_					0	0	0			REV__nc|ENSG00000159873|Q8IWD4-4|CCDC117	REV__nc|ENSG00000159873|Q8IWD4-4|CCDC117	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.323974609375	2	499.307678	996.600803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.022	1	57.003	56.503	57.503	-0.019081								0	0	0	0.33432	1	13727	13727		21.747	0.87544	1		+		25037	16869	14283	14284	31363	31363					0.10236709350704132
LPKWPEPVEQF	11	Unmodified	_LPKWPEPVEQF_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2713623046875	3	457.243206	1368.70779	0.18549	8.4816E-05	-0.081227	-3.7141E-05	0.10427	4.7676E-05	457.2430866389234	53.062	1.1189	53.062	52.63	53.749	0					127	41	4	0	0	0	0.33236	1	12404	12404		2.4348	0.97967	1	2792000			25038	7131	14284	14285	31364	31364					0.03818214774400985
LPKWVAWI	8	Unmodified	_LPKWVAWI_					0	0	0		ENST00000358701.9_2_9:139113644-139113686:-|nuORF	ENST00000358701.9_2_9:139113644-139113686:-|nuORF	ENST00000358701.9_2_9:139113644-139113686:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2801208496094	2	506.802563	1011.59057	0.39296	0.00019915	2.9882	0.0015144	3.3811	0.0017136	506.8040512060144	42.134	0.45118	42.219	42.063	42.514	0.085201					25	15	2	0	0	0	0.32778	1	9209	9209		9.3474	2.0582	1	182800			25039	9652	14285	14286	31365	31365					0.08524146416129952
LPKYMDKLW	9	Unmodified	_LPKYMDKLW_					0	0	0			REV__ENST00000581296.2_2_17:43585477-43590583:-|nuORF	REV__ENST00000581296.2_2_17:43585477-43590583:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.346923828125	2	597.323002	1192.63145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.795	1	90.885	90.385	91.385	0.090668								0	0	0	0.25631	1	24071	24071		4.3292	0	1		+		25040	22486	14286	14287	31366	31366					0.04284119673434361
LPKYRSYF	8	Unmodified	_LPKYRSYF_					0	0	0		ENST00000367568.4_1_6:144509016-144509238:+|nuORF	ENST00000367568.4_1_6:144509016-144509238:+|nuORF	ENST00000367568.4_1_6:144509016-144509238:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2958984375	2	537.292559	1072.57057	0.50016	0.00026873	0.33702	0.00018108	0.83718	0.00044981	537.2927138702855	67.983	3.077	67.966	66.814	69.891	-0.016296					252	109	5	0	0	0	0.4397	1	16868	16868		9.3474	0.75416	1	3195400			25041	9742	14287	14288	31367	31367					0.0371835068551718
LPLAGPPITVT	11	Unmodified	_LPLAGPPITVT_					0	0	0		ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8428955078125	2	539.828975	1077.6434	0.5251	0.00028346	0.13133	7.0894E-05	0.65643	0.00035436	539.8289983721604	66.729	1.6008	66.729	66.396	67.997	0					141	55	4	0	0	0	0.082456	2	16852	16800;16852		43.858	18.459	1	4540400			25042	3294	14288	14289	31368;31369	31369					0.10768059688280118
LPLAGPPITVT	11	Unmodified	_LPLAGPPITVT_					0	0	0		ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8425903320312	2	539.828975	1077.6434	0.47974	0.00025898	0.099492	5.3709E-05	0.57923	0.00031269	539.8290147150924	66.595	1.9019	66.679	65.968	67.87	0.083832					151	67	4	0	0	0	0.20634	2	16765	16765;16814		30.637	10.935	1	4391800			25043	3294	14288	14289	31370;31371	31370					0.10768059688280118
LPLAHVLEL	9	Unmodified	_LPLAHVLEL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ENSG00000123983|ENST00000357430|ACSL3	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.81060791015625	2	502.810585	1003.60662	0.36072	0.00018137	-1.0141	-0.00050991	-0.65341	-0.00032854	502.8100189952429	68.397	2.003	68.397	67.757	69.76	0					166	72	4	0	0	0	0.0085732	1	17168	17168		81.613	30.758	1	4111800			25044	882	14289	14290	31372	31372					0.10495807862366746
LPLAHVLEL	9	Unmodified	_LPLAHVLEL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ENSG00000123983|ENST00000357430|ACSL3	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.8106384277344	2	502.810585	1003.60662	0.27499	0.00013827	-1.0042	-0.00050494	-0.72925	-0.00036667	502.81002786316986	68.389	2.3115	68.461	67.796	70.107	0.071938					176	83	4	0	0	0	0.0085732	1	17133	17133		81.613	30.758	1	3852900			25045	882	14289	14290	31373	31373					0.10495807862366746
LPLAHVLEL	9	Unmodified	_LPLAHVLEL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ENSG00000123983|ENST00000357430|ACSL3	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.8105163574219	2	502.810585	1003.60662	0.39494	0.00019858	-1.0547	-0.0005303	-0.65973	-0.00033172	502.8099910487891	68.48	1.6021	68.461	67.836	69.438	-0.019157					145	56	4	0	0	0	0.013258	1	17159	17159		74.423	32.328	1	3412400			25046	882	14289	14290	31374	31374					0.10495807862366746
LPLALEQI	8	Unmodified	_LPLALEQI_					0	0	0		nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3;ENSG00000123427|ENST00000300209|EEF1AKMT3	nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.794189453125	2	448.776211	895.537869	0.52452	0.00023539	-1.5687	-0.00070398	-1.0441	-0.00046858	448.7759370859524	77.586	1.1183	77.586	76.812	77.93	0					56	41	2	0	0	0	0.30043	1	19977	19977		30.198	0	1	116570			25047	3105	14290	14291	31375	31375					0.08592143562646015
LPLALEQI	8	Unmodified	_LPLALEQI_					0	0	0		nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3;ENSG00000123427|ENST00000300209|EEF1AKMT3	nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7943115234375	2	448.776211	895.537869	0.67936	0.00030488	-1.0963	-0.00049201	-0.41698	-0.00018713	448.7760110131423	77.708	0.68376	77.677	77.213	77.897	-0.031334					31	24	2	0	0	0	0.30043	1	19967	19967		22.453	0	1	124440			25048	3105	14290	14291	31376	31376					0.08592143562646015
LPLALLRVGF	10	Unmodified	_LPLALLRVGF_					0	0	0		ENST00000279036.11_3_20:44054315-44054561:+|nuORF	ENST00000279036.11_3_20:44054315-44054561:+|nuORF	ENST00000279036.11_3_20:44054315-44054561:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.29736328125	2	549.855327	1097.6961	0.3768	0.00020719	-2.191	-0.0012047	-1.8142	-0.00099753	549.8541183741938	73.799	0.48252	73.852	73.578	74.06	0.052361					28	16	2	0	0	0	0.29519	1	18896	18896		10.824	0	1	438960			25049	9109	14291	14292	31377	31377					0.15116062541756037
LPLALRTV	8	Unmodified	_LPLALRTV_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7919921875	2	441.792195	881.569838	0.17995	7.95E-05	0.10888	4.8102E-05	0.28883	0.0001276	441.7921948670357	51.77	0.48193	51.77	51.592	52.074	0					35	17	3	0	0	0	0.10249	1	12121	12121		60.074	3.8969	1	606900			25050	8553	14292	14293	31378	31378					0.12431556036460734
LPLALRTV	8	Unmodified	_LPLALRTV_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7923583984375	2	441.792195	881.569838	0.1388	6.1319E-05	0.2077	9.1762E-05	0.3465	0.00015308	441.7921862508547	51.723	0.48754	51.77	51.595	52.082	0.046574					31	17	2	0	0	0	0.15072	1	12106	12106		51.63	3.8811	1	788840			25051	8553	14292	14293	31379	31379					0.12431556036460734
LPLALRTV	8	Unmodified	_LPLALRTV_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7923583984375	2	441.792195	881.569838	0.063968	2.8261E-05	0.18503	8.1743E-05	0.24899	0.00011	441.79222244861404	51.808	0.51321	51.808	51.603	52.116	-0.00017166					39	18	3	0	0	0	0.12475	1	12097	12097		56.177	3.9087	1	557920			25052	8553	14292	14293	31380	31380					0.12431556036460734
LPLALWAL	8	Unmodified	_LPLALWAL_					0	0	0		ENSG00000105509|ENST00000540069|HAS1;nc|ENSG00000105509|Q92839|HAS1	ENSG00000105509|ENST00000540069|HAS1	ENSG00000105509|ENST00000540069|HAS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.794189453125	2	448.783839	895.553125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.432	1	77.487	76.987	77.987	0.055412								0	0	0	0.32888	1	19977	19977		24.21	3.3387	1				25053	1989	14293	14294	31381	31381					0.10117055150487886
LPLAMHPSV	9	Unmodified	_LPLAMHPSV_					0	0	0		ENST00000573130.2_1_16:3104061-3104997:-|nuORF	ENST00000573130.2_1_16:3104061-3104997:-|nuORF	ENST00000573130.2_1_16:3104061-3104997:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.2792053222656	2	482.767863	963.521173	0.46913	0.00022648	0.74301	0.0003587	1.2121	0.00058518	482.76802337344566	48.326	0.4783	48.37	48.243	48.721	0.04332					24	17	2	0	0	0	0.19839	1	11048	11048		28.487	3.0875	1	168280			25054	12031	14294	14295	31382	31382					0.03795319405060127
LPLARIATV	9	Unmodified	_LPLARIATV_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.31072998046875	2	477.310752	952.606951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.895	1	52.946	52.446	53.446	0.050575								0	0	0	0.010523	1	12450	12450		79.596	29.663	1				25055	6014	14295	14296	31383	31383					0.12875227582230764
LPLARIATV	9	Unmodified	_LPLARIATV_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.3107604980469	2	477.310752	952.606951	0.32255	0.00015396	-0.48094	-0.00022956	-0.15839	-7.5601E-05	477.3103729876652	53.221	2.3	53.212	52.631	54.931	-0.0096054					136	84	4	0	0	0	0.0079761	1	12454	12454		82.529	32.596	1	1363900			25056	6014	14295	14296	31384	31384					0.12875227582230764
LPLARVKAL	9	Unmodified	_LPLARVKAL_					0	0	0		ENST00000485527.5_1_2:75185926-75187326:+|nuORF;ENST00000233699.8_1_2:75185926-75196546:+|nuORF;ENST00000459636.5_1_2:75185926-75188259:+|nuORF;ENSG00000115350|ENST00000483063|POLE4	ENST00000485527.5_1_2:75185926-75187326:+|nuORF	ENST00000485527.5_1_2:75185926-75187326:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.8342590332031	2	490.834394	979.654236	0.37142	0.00018231	-0.53062	-0.00026045	-0.1592	-7.8139E-05	490.8340800361222	40.173	0.66721	40.173	39.858	40.526	0					50	23	3	0	0	0	0.057976	1	8540	8540		49.933	15.831	1	348210			25057	2637	14296	14297	31385	31385					0.1635950685321177
LPLARVKAL	9	Unmodified	_LPLARVKAL_					0	0	0		ENST00000485527.5_1_2:75185926-75187326:+|nuORF;ENST00000233699.8_1_2:75185926-75196546:+|nuORF;ENST00000459636.5_1_2:75185926-75188259:+|nuORF;ENSG00000115350|ENST00000483063|POLE4	ENST00000485527.5_1_2:75185926-75187326:+|nuORF	ENST00000485527.5_1_2:75185926-75187326:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.834228515625	2	490.834394	979.654236	0.57486	0.00028216	-0.44982	-0.00022079	0.12504	6.1372E-05	490.8340800685962	40.086	0.80604	40.178	39.887	40.693	0.09267					53	28	3	0	0	0	0.057976	1	8543	8543		49.933	13.806	1	427130			25058	2637	14296	14297	31386	31386					0.1635950685321177
LPLARVKAL	9	Unmodified	_LPLARVKAL_					0	0	0		ENST00000485527.5_1_2:75185926-75187326:+|nuORF;ENST00000233699.8_1_2:75185926-75196546:+|nuORF;ENST00000459636.5_1_2:75185926-75188259:+|nuORF;ENSG00000115350|ENST00000483063|POLE4	ENST00000485527.5_1_2:75185926-75187326:+|nuORF	ENST00000485527.5_1_2:75185926-75187326:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	490.834394	979.654236	0.41789	0.00020511	-0.44842	-0.0002201	-0.030533	-1.4986E-05	490.8341399511682	40.035	0.52384	40.134	39.844	40.368	0.099407	-0.027652	2.3342E-05	NaN	49.933	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365820			25059	2637	14296	14297							0.1635950685321177
LPLASIWK	8	Unmodified	_LPLASIWK_					0	0	0		nc|ENSG00000215811|A8MVZ5|BTNL10P	nc|ENSG00000215811|A8MVZ5|BTNL10P	nc|ENSG00000215811|A8MVZ5|BTNL10P	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.27581787109375	2	464.286746	926.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.68	1	18.562	18.062	19.062	-0.11739								0	0	0	0.36169	1	2007	2007		9.3474	0	1				25060	12947	14297	14298	31387	31387					0.09272153662163873
LPLASIWK	8	Unmodified	_LPLASIWK_					0	0	0		nc|ENSG00000215811|A8MVZ5|BTNL10P	nc|ENSG00000215811|A8MVZ5|BTNL10P	nc|ENSG00000215811|A8MVZ5|BTNL10P	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.2757568359375	2	464.286746	926.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.694	1	18.636	18.136	19.136	-0.058174								0	0	0	0.36169	1	2008	2008		9.3474	0	1				25061	12947	14297	14298	31388	31388					0.09272153662163873
LPLAWAEPLI	10	Unmodified	_LPLAWAEPLI_					0	0	0			REV__chr6:122761958-122780291|162|23.72|0.0|13.96|+|0|TE_info:L1PA5,L1PA5_dup4732,L1,LINE,donor,+,122761880,122761958|None,FABP7|4	REV__chr6:122761958-122780291|162|23.72|0.0|13.96|+|0|TE_info:L1PA5,L1PA5_dup4732,L1,LINE,donor,+,122761880,122761958|None,FABP7|4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.31640625	2	561.831517	1121.64848	0.13929	7.8257E-05	-0.42129	-0.00023669	-0.282	-0.00015844	561.8313899404793	94.137	0.1176	94.137	94.048	94.166	0					11	9	2	0	0	0	0.31165	1	25081	25081		15.847	5.0233	1	64405	+		25062	13207	14298	14299	31389	31389					0.09252363550876908
LPLAYTTV	8	Unmodified	_LPLAYTTV_					0	0	0		ENST00000216083.6_1_22:39262592-39262622:-|nuORF	ENST00000216083.6_1_22:39262592-39262622:-|nuORF	ENST00000216083.6_1_22:39262592-39262622:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.2549743652344	2	439.255111	876.49567	0.075743	3.3271E-05	-0.074263	-3.262E-05	0.0014801	6.5016E-07	439.2549758849129	68.081	0.59798	68.081	67.783	68.381	0					44	21	3	0	0	0	0.16192	1	17120	17120		49.669	2.748	1	480020			25063	8813	14299	14300	31390	31390					0.052481681542644765
LPLAYTTV	8	Unmodified	_LPLAYTTV_					0	0	0		ENST00000216083.6_1_22:39262592-39262622:-|nuORF	ENST00000216083.6_1_22:39262592-39262622:-|nuORF	ENST00000216083.6_1_22:39262592-39262622:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.2549133300781	2	439.255111	876.49567	0.14495	6.367E-05	-0.10549	-4.6339E-05	0.039454	1.733E-05	439.2549408153627	67.961	0.59184	68.039	67.744	68.336	0.078049					46	20	3	0	0	0	0.35375	1	17145	17145		24.674	1.5255	1	425840			25064	8813	14299	14300	31391	31391					0.052481681542644765
LPLAYTTV	8	Unmodified	_LPLAYTTV_					0	0	0		ENST00000216083.6_1_22:39262592-39262622:-|nuORF	ENST00000216083.6_1_22:39262592-39262622:-|nuORF	ENST00000216083.6_1_22:39262592-39262622:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.2548828125	2	439.255111	876.49567	0.12659	5.5605E-05	0.066368	2.9153E-05	0.19296	8.4758E-05	439.2549742475026	68.079	0.64578	68.063	67.727	68.373	-0.016296					45	22	3	0	0	0	0.28861	1	17112	17112		32.117	1.8922	1	576880			25065	8813	14299	14300	31392	31392					0.052481681542644765
LPLCLQEPGR	10	Unmodified	_LPLCLQEPGR_					0	0	0		ENST00000591490.5_1_17:40821363-40821663:-|nuORF;ENST00000591476.5_1_17:40820147-40821663:-|nuORF	ENST00000591490.5_1_17:40821363-40821663:-|nuORF	ENST00000591490.5_1_17:40821363-40821663:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3074951171875	2	563.307884	1124.60121	0.25208	0.000142	-1.3603	-0.00076629	-1.1083	-0.00062429	563.3073364343038	81.006	1.5666	81.006	80.63	82.197	0					129	68	3	0	0	0	0.22916	2	21115	21054;21115		29.082	3.6823	1	7038600			25066	12185	14300	14301	31393;31394	31394					0.043897610082240135
LPLCLQEPGR	10	Unmodified	_LPLCLQEPGR_					0	0	0		ENST00000591490.5_1_17:40821363-40821663:-|nuORF;ENST00000591476.5_1_17:40820147-40821663:-|nuORF	ENST00000591490.5_1_17:40821363-40821663:-|nuORF	ENST00000591490.5_1_17:40821363-40821663:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	563.307884	1124.60121	0.26618	0.00014994	-0.76494	-0.0004309	-0.49875	-0.00028095	563.3075172312853	81.042	1.2226	81.015	80.653	81.875	-0.026817	0.011901	0.00033783	NaN	29.082	103	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5749100			25067	12185	14300	14301							0.043897610082240135
LPLCPANTL	9	Unmodified	_LPLCPANTL_					0	0	0		ENST00000357055.7_1_2:32446158-32446194:+|nuORF	ENST00000357055.7_1_2:32446158-32446194:+|nuORF	ENST00000357055.7_1_2:32446158-32446194:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2686462402344	2	471.259871	940.505189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.857	1	70.857	70.357	71.357	0								0	0	0	0.20639	1	17980	17980		20.454	3.5113	1				25068	9628	14301	14302	31395	31395					0.03255613168153104
LPLCPANTL	9	Unmodified	_LPLCPANTL_					0	0	0		ENST00000357055.7_1_2:32446158-32446194:+|nuORF	ENST00000357055.7_1_2:32446158-32446194:+|nuORF	ENST00000357055.7_1_2:32446158-32446194:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2691650390625	2	471.259871	940.505189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.056	1	71.117	70.617	71.617	0.060783								0	0	0	0.18374	1	18036	18036		26.884	0.54238	1				25069	9628	14301	14302	31396	31396					0.03255613168153104
LPLCPWYWPF	10	Unmodified	_LPLCPWYWPF_					0	0	0			REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.7662658691406	3	441.219455	1320.63654	0.43306	0.00019108	1.3146	0.00058004	1.7477	0.00077112	441.21999086473284	55.764	0.3932	55.835	55.565	55.958	0.070889					24	14	2	0	0	0	0.31876	1	13331	13331		4.1895	0	1	181960	+		25070	21347	14302	14303	31397	31397					-0.01095576463967518
LPLCPWYWPF	10	Unmodified	_LPLCPWYWPF_					0	0	0			REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	REV__nc|ENSG00000174564|Q6UXL0-3|IL20RB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.76611328125	3	441.219455	1320.63654	0.71685	0.00031629	0.97496	0.00043017	1.6918	0.00074646	441.2198302419932	56.196	0.27148	56.176	55.942	56.213	-0.019081					22	9	3	0	0	0	0.31876	1	13427	13427		4.1895	1.3462	1	591850	+		25071	21347	14302	14303	31398	31398					-0.01095576463967518
LPLCSTSRAD	10	Unmodified	_LPLCSTSRAD_					0	0	0			REV__ENST00000393721.5_2_X:153172840-153173077:-|nuORF	REV__ENST00000393721.5_2_X:153172840-153173077:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.85546875	2	531.766049	1061.51754	0.22935	0.00012196	-0.33019	-0.00017558	-0.10083	-5.3619E-05	531.765697482454	26.21	0.79278	26.172	25.871	26.664	-0.03867					38	24	2	0	0	0	0.31958	1	4411	4411		5.2969	0	1	111940	+		25072	20610	14303	14304	31399	31399					-0.010753951594551836
LPLCVTFLL	9	Unmodified	_LPLCVTFLL_					0	0	0		ENSG00000181045|ENST00000361193|SLC26A11	ENSG00000181045|ENST00000361193|SLC26A11	ENSG00000181045|ENST00000361193|SLC26A11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.80419921875	2	509.803914	1017.59328	0.2828	0.00014417	-0.075174	-3.8324E-05	0.20763	0.00010585	509.8038035289292	76.309	3.1155	76.309	75.395	78.511	0					278	114	5	0	0	0	0.27532	2	19863	19863;19923		12.532	12.532	1	9397900			25073	7220	14304	14305	31400;31401	31400					0.08518233758763927
LPLCVTFLL	9	Unmodified	_LPLCVTFLL_					0	0	0		ENSG00000181045|ENST00000361193|SLC26A11	ENSG00000181045|ENST00000361193|SLC26A11	ENSG00000181045|ENST00000361193|SLC26A11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.80413818359375	2	509.803914	1017.59328	0.44765	0.00022821	0.042047	2.1436E-05	0.4897	0.00024965	509.8037417538526	76.612	3.1368	76.581	75.342	78.479	-0.031479					358	115	5	0	0	0	0.30166	1	19844	19844		8.5933	8.5933	1	9050300			25074	7220	14304	14305	31402	31402					0.08518233758763927
LPLDDIDLLL	10	Unmodified	_LPLDDIDLLL_					0	0	0		ENST00000605833.1_1_10:17258201-17271901:-|nuORF	ENST00000605833.1_1_10:17258201-17271901:-|nuORF	ENST00000605833.1_1_10:17258201-17271901:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.7599487304688	2	570.331547	1138.64854	0.51711	0.00029493	-0.30179	-0.00017212	0.21532	0.0001228	570.3312234645686	75.123	1.0182	75.092	74.7	75.718	-0.031487					93	37	4	0	0	0	0.318	1	19284	19284		7.2892	7.2892	1	1060800			25075	12291	14305	14306	31403	31403					0.08476318760244794
LPLDDIDLLL	10	Unmodified	_LPLDDIDLLL_					0	0	0		ENST00000605833.1_1_10:17258201-17271901:-|nuORF	ENST00000605833.1_1_10:17258201-17271901:-|nuORF	ENST00000605833.1_1_10:17258201-17271901:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	570.331547	1138.64854	0.38573	0.00021999	-0.16573	-9.4523E-05	0.22	0.00012547	570.3313296163469	75.087	1.1159	75.087	74.566	75.682	0	0.0024524	6.988E-05	NaN	7.2892	81	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1067500			25076	12291	14305	14306							0.08476318760244794
LPLDDIDLLL	10	Unmodified	_LPLDDIDLLL_					0	0	0		ENST00000605833.1_1_10:17258201-17271901:-|nuORF	ENST00000605833.1_1_10:17258201-17271901:-|nuORF	ENST00000605833.1_1_10:17258201-17271901:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	570.331547	1138.64854	0.39521	0.0002254	-0.2136	-0.00012182	0.18161	0.00010358	570.331269021168	75.022	1.2176	75.075	74.671	75.889	0.052361	-0.0097115	1.5276E-05	NaN	7.2892	97	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1114200			25077	12291	14305	14306							0.08476318760244794
LPLDLGRSREL	11	Unmodified	_LPLDLGRSREL_					0	0	0		ENST00000558911.1_1_15:99874300-99893998:+|nuORF;ENST00000559774.6_1_15:99874138-99895656:+|nuORF;ENST00000558248.5_1_15:99860885-99892677:+|nuORF;ENST00000558890.5_1_15:99872165-99903471:+|nuORF;nc|ENSG00000168904|Q86X40-3|LRRC28;nc|ENSG00000168904|Q86X40-2|LRRC28;ENSG00000168904|ENST00000301981|LRRC28	ENST00000558911.1_1_15:99874300-99893998:+|nuORF	ENST00000558911.1_1_15:99874300-99893998:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.5824890136719	3	423.582221	1267.72483	0.35686	0.00015116	-0.42212	-0.0001788	-0.065256	-2.7641E-05	423.5820062693428	37.412	1.176	37.412	36.644	37.82	0					112	41	4	0	0	0	0.43513	1	7776	7776		6.6235	0	1	2436100			25078	6308	14306	14307	31404	31404					0.10168135380217791
LPLDRLNP	8	Unmodified	_LPLDRLNP_					0	0	0			REV__ENSG00000182704|ENST00000333090|TSKU	REV__ENSG00000182704|ENST00000333090|TSKU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.2774963378906	2	469.276909	936.539266	0.058205	2.7314E-05	-0.35171	-0.00016505	-0.29351	-0.00013774	469.2768654164208	40.836	0.84181	40.935	40.666	41.508	0.099407					84	30	3	0	0	0	0.30517	1	8911	8911		30.225	0	1	5292400	+		25079	18211	14307	14308	31405	31405					0.0684577765140375
LPLDVQNPL	9	Unmodified	_LPLDVQNPL_					0	0	0		ENST00000537866.5_1_16:57220958-57238444:+|nuORF;ENST00000562439.5_1_16:57220056-57238444:+|nuORF;ENST00000568505.6_1_16:57220242-57238444:+|nuORF;ENST00000394420.8_1_16:57220203-57238444:+|nuORF	ENST00000537866.5_1_16:57220958-57238444:+|nuORF	ENST00000537866.5_1_16:57220958-57238444:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.77947998046875	2	504.78985	1007.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.834	1	69.812	69.312	70.312	-0.022087								0	0	0	0.19534	1	17655	17655		24.021	4.5816	1				25080	10069	14308	14309	31406	31406					0.06166627103038991
LPLEDSPVI	9	Unmodified	_LPLEDSPVI_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.7763977050781	2	491.776408	981.538263	0.15446	7.5958E-05	1.1846	0.00058257	1.3391	0.00065853	491.77650303478106	67.005	0.96164	66.991	66.634	67.596	-0.013588					65	33	3	0	0	0	0.17787	1	16780	16780		26.884	9.9414	1	361930			25081	1058	14309	14310	31407	31407					0.04675518491865205
LPLEEGRTV	9	Unmodified	_LPLEEGRTV_					0	0	0		nc|ENSG00000019144|Q86UU1-3|PHLDB1;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8013000488281	2	507.284931	1012.55531	0.36462	0.00018497	-0.8459	-0.00042911	-0.48128	-0.00024414	507.2848112073558	38.037	0.34412	38.037	37.895	38.239	0					19	11	2	0	0	0	0.22143	1	7909	7909		19.362	0	1	206220			25082	498	14310	14311	31408	31408					0.04953439097664614
LPLEEGRTV	9	Unmodified	_LPLEEGRTV_					0	0	0		nc|ENSG00000019144|Q86UU1-3|PHLDB1;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	nc|ENSG00000019144|Q86UU1-3|PHLDB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.80133056640625	2	507.284931	1012.55531	0.35222	0.00017868	-0.54441	-0.00027617	-0.19219	-9.7495E-05	507.2848045406321	38.005	0.33051	38.096	37.906	38.237	0.090881					22	11	2	0	0	0	0.22143	1	7866	7866		24.991	0	1	248750			25083	498	14310	14311	31409	31409					0.04953439097664614
LPLEKDLKI	9	Unmodified	_LPLEKDLKI_					0	0	0		nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF	nc|ENSG00000135636|O75923-15|DYSF	nc|ENSG00000135636|O75923-15|DYSF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.8115234375	2	534.8368	1067.65905	0.65228	0.00034886	-1.4229	-0.00076104	-0.77067	-0.00041218	534.8359912986044	48.526	0.45622	48.526	48.238	48.694	0					22	15	2	0	0	0	0.152	1	11118	11118		43.982	14.141	1	333760			25084	3889	14311	14312	31410	31410					0.12792346205310423
LPLEKDLKI	9	Unmodified	_LPLEKDLKI_					0	0	0		nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF	nc|ENSG00000135636|O75923-15|DYSF	nc|ENSG00000135636|O75923-15|DYSF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.8107299804688	2	534.8368	1067.65905	0.66111	0.00035358	-1.4996	-0.00080205	-0.83851	-0.00044847	534.8359382012585	48.517	0.48569	48.565	48.285	48.771	0.047523					28	17	2	0	0	0	0.20381	1	11101	11101		23.79	7.6407	1	340120			25085	3889	14311	14312	31411	31411					0.12792346205310423
LPLEKDLKI	9	Unmodified	_LPLEKDLKI_					0	0	0		nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF	nc|ENSG00000135636|O75923-15|DYSF	nc|ENSG00000135636|O75923-15|DYSF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.8110961914062	2	534.8368	1067.65905	0.6351	0.00033968	-1.2387	-0.0006625	-0.6036	-0.00032283	534.8359781563674	48.454	0.42604	48.497	48.269	48.695	0.04332					24	15	2	0	0	0	0.12056	1	11072	11072		43.982	7.4756	1	356880			25086	3889	14311	14312	31412	31412					0.12792346205310423
LPLEKRTL	8	Unmodified	_LPLEKRTL_					0	0	0		ENSG00000114166|ENST00000263754|KAT2B	ENSG00000114166|ENST00000263754|KAT2B	ENSG00000114166|ENST00000263754|KAT2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.800537109375	2	485.30821	968.601866	0.33858	0.00016432	0.53992	0.00026203	0.87851	0.00042635	485.30839556229046	58.386	0.60699	58.386	58.075	58.682	0					37	20	3	0	0	0	0.26862	1	14185	14185		34.402	1.616	1	449970			25087	2549	14312	14313	31413	31413					0.11630923719621933
LPLEKRTL	8	Unmodified	_LPLEKRTL_					0	0	0		ENSG00000114166|ENST00000263754|KAT2B	ENSG00000114166|ENST00000263754|KAT2B	ENSG00000114166|ENST00000263754|KAT2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8009338378906	2	485.30821	968.601866	0.27358	0.00013277	0.55988	0.00027171	0.83346	0.00040449	485.3084641529665	58.206	0.64219	58.292	57.997	58.639	0.085621					34	22	2	0	0	0	0.26862	1	14131	14131		34.402	1.616	1	455000			25088	2549	14312	14313	31414	31414					0.11630923719621933
LPLEVFAAPG	10	Unmodified	_LPLEVFAAPG_					0	0	0			REV__ENSG00000212123|ENST00000419421|PRR22	REV__ENSG00000212123|ENST00000419421|PRR22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.80181884765625	2	507.286943	1012.55933	0.25004	0.00012684	-4.2091	-0.0021352	-3.959	-0.0020084	507.2852203759666	37.943	0.38199	38.04	37.82	38.202	0.097527					22	13	2	0	0	0	0.27772	1	7846	7846		26.884	0.61551	1	219530	+		25089	19027	14313	14314	31415	31415					0.05355528591371694
LPLFFLFYSL	10	Unmodified	_LPLFFLFYSL_					0	0	0		ENST00000316610.6_1_5:89756546-89756774:-|nuORF	ENST00000316610.6_1_5:89756546-89756774:-|nuORF	ENST00000316610.6_1_5:89756546-89756774:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2389221191406	3	420.574004	1258.70018	0.5706	0.00023998	2.1397	0.00089992	2.7104	0.0011399	420.5749125468268	33.695	0.36567	33.761	33.538	33.904	0.06636					18	12	2	0	0	0	0.31267	1	6580	6580		8.9762	2.7419	1	76298			25090	9358	14314	14315	31416	31416					0.08118107244808925
LPLFLQTAH	9	Unmodified	_LPLFLQTAH_					0	0	0			REV__ENST00000254657.7_1_2:239161823-239162174:-|nuORF	REV__ENST00000254657.7_1_2:239161823-239162174:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3013305664062	2	520.300384	1038.58622	0.45155	0.00023494	0.31936	0.00016617	0.77091	0.00040111	520.300545505845	71.199	0.89818	71.175	70.611	71.509	-0.024872					60	32	2	0	0	0	0.07432	1	18058	18058		43.858	2.0187	1	677010	+		25091	19544	14315	14316	31417	31417					0.06846637202556849
LPLFVRPL	8	Unmodified	_LPLFVRPL_					0	0	0			REV__ENST00000326765.10_1_12:12940216-12940408:+|nuORF	REV__ENST00000326765.10_1_12:12940216-12940408:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.8103942871094	2	477.810388	953.606223	0.22964	0.00010973	0.99479	0.00047532	1.2244	0.00058505	477.81038443553086	70.161	1.1368	70.227	69.856	70.993	0.066048					86	40	4	0	0	0	0.17761	1	17786	17786		46.921	0	1	713270	+		25092	20004	14316	14317	31418	31418					0.12756432933167616
LPLFVRPL	8	Unmodified	_LPLFVRPL_					0	0	0			REV__ENST00000326765.10_1_12:12940216-12940408:+|nuORF	REV__ENST00000326765.10_1_12:12940216-12940408:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.7503356933594	2	477.810388	953.606223	0.22964	0.00010973	0.99479	0.00047532	1.2244	0.00058505	477.81038443553086	70.161	1.1368	70.227	69.856	70.993	0.066048					86	40	4	0	0	0	0.25627	1	17731	17731		46.921	0	1	713270	+		25093	20004	14316	14317	31419	31419					0.12756432933167616
LPLFVRPL	8	Unmodified	_LPLFVRPL_					0	0	0			REV__ENST00000326765.10_1_12:12940216-12940408:+|nuORF	REV__ENST00000326765.10_1_12:12940216-12940408:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.810546875	2	477.810388	953.606223	0.27835	0.000133	0.8287	0.00039596	1.107	0.00052896	477.8103315494818	70.245	1.1669	70.223	69.779	70.946	-0.022087					91	41	4	0	0	0	0.23581	1	17846	17846		38.151	0	1	737040	+		25094	20004	14316	14317	31420	31420					0.12756432933167616
LPLGRRLDA	9	Unmodified	_LPLGRRLDA_					0	0	0		ENST00000343916.7_1_20:61472127-61472319:+|nuORF	ENST00000343916.7_1_20:61472127-61472319:+|nuORF	ENST00000343916.7_1_20:61472127-61472319:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.8213195800781	2	505.808908	1009.60326	0.16299	8.2443E-05	-0.038272	-1.9358E-05	0.12472	6.3085E-05	505.8089328049578	29.3	0.57182	29.313	28.935	29.507	0.013474					34	20	2	0	0	0	0.21303	1	5245	5245		21.747	0	1	228840			25095	9551	14317	14318	31421	31421					0.09884557808356931
LPLGSFPRGL	10	Unmodified	_LPLGSFPRGL_					0	0	0			REV__nc|ENSG00000159873|Q8IWD4-4|CCDC117	REV__nc|ENSG00000159873|Q8IWD4-4|CCDC117	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8318481445312	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.618	1	43.695	43.195	44.195	0.077515								0	0	0	0.34495	1	9594	9594		16.942	3.4344	1		+		25096	16869	14318	14319	31422	31422					0.08718326093890028
LPLHIDKSF	9	Unmodified	_LPLHIDKSF_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7393188476562	2	535.305667	1068.59678	0.40275	0.0002156	-0.018727	-1.0024E-05	0.38403	0.00020557	535.3054641381394	61.902	0.90924	61.902	61.487	62.396	0					55	33	2	0	0	0	0.18943	1	15145	15145		23.148	0	1	413930	+		25097	19084	14319	14320	31423	31423					0.06522619856991696
LPLHLIKSYLF	11	Unmodified	_LPLHLIKSYLF_					0	0	0		ENST00000567351.5_2_17:73997368-73998786:+|nuORF;ENSG00000250506|ENST00000448471|CDK3	ENST00000567351.5_2_17:73997368-73998786:+|nuORF	ENST00000567351.5_2_17:73997368-73998786:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.6083984375	3	448.607708	1342.80129	0.38934	0.00017466	0.34633	0.00015537	0.73567	0.00033003	448.6080642858618	87.435	0.85531	87.435	86.938	87.794	0					102	38	4	0	0	0	0.33334	1	22943	22943		0.40827	0.40827	1	681480			25098	8592	14320	14321	31424	31424					0.14360558947510071
LPLHPKGQR	9	Unmodified	_LPLHPKGQR_					0	0	0		ENST00000308713.9_3_16:29910378-29910510:-|nuORF	ENST00000308713.9_3_16:29910378-29910510:-|nuORF	ENST00000308713.9_3_16:29910378-29910510:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.317138671875	2	523.3169	1044.61925	0.71942	0.00037649	0.19714	0.00010317	0.91656	0.00047965	523.3166535533561	84.561	0.78586	84.561	84.186	84.972	0					55	29	3	0	0	0	0.21303	1	22171	22171		21.747	21.747	1	264430			25099	9297	14321	14322	31425	31425					0.0987226404527064
LPLHPKGQR	9	Unmodified	_LPLHPKGQR_					0	0	0		ENST00000308713.9_3_16:29910378-29910510:-|nuORF	ENST00000308713.9_3_16:29910378-29910510:-|nuORF	ENST00000308713.9_3_16:29910378-29910510:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3168334960938	2	523.3169	1044.61925	0.66927	0.00035024	0.14381	7.5256E-05	0.81308	0.0004255	523.3164836314487	84.444	0.60229	84.521	84.174	84.776	0.077095					48	23	3	0	0	0	0.21303	2	22103	22103;22151		21.747	21.747	1	254260			25100	9297	14321	14322	31426;31427	31426					0.0987226404527064
LPLHPKGQR	9	Unmodified	_LPLHPKGQR_					0	0	0		ENST00000308713.9_3_16:29910378-29910510:-|nuORF	ENST00000308713.9_3_16:29910378-29910510:-|nuORF	ENST00000308713.9_3_16:29910378-29910510:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	523.3169	1044.61925	0.66988	0.00035056	0.26255	0.0001374	0.93243	0.00048796	523.3165262785633	84.515	0.6525	84.502	84.138	84.79	-0.01284	-0.025719	6.5626E-05	NaN	21.747	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244120			25101	9297	14321	14322							0.0987226404527064
LPLHRCVL	8	Unmodified	_LPLHRCVL_					0	0	0			REV__ENST00000577161.5_1_17:78811748-78857220:+|nuORF	REV__ENST00000577161.5_1_17:78811748-78857220:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.792724609375	2	475.783847	949.553142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.09	1	49.122	48.622	49.622	0.032043								0	0	0	0.35985	1	11275	11275		10.183	0.83596	1		+		25102	22458	14322	14323	31428	31428					0.07634731878852108
LPLHVGLTV	9	Unmodified	_LPLHVGLTV_					0	0	0		ENSG00000178623|ENST00000407714|GPR35;nc|ENSG00000178623|Q9HC97-2|GPR35	ENSG00000178623|ENST00000407714|GPR35	ENSG00000178623|ENST00000407714|GPR35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.79742431640625	2	474.797478	947.580402	0.048485	2.3021E-05	0.27598	0.00013103	0.32446	0.00015405	474.79755260595425	59.277	0.48455	59.277	59.024	59.508	0					39	16	3	0	0	0	0.0046213	1	14422	14422		89.427	25.864	1	485200			25103	7066	14323	14324	31429	31429					0.10451538690904272
LPLHVGLTV	9	Unmodified	_LPLHVGLTV_					0	0	0		ENSG00000178623|ENST00000407714|GPR35;nc|ENSG00000178623|Q9HC97-2|GPR35	ENSG00000178623|ENST00000407714|GPR35	ENSG00000178623|ENST00000407714|GPR35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7975158691406	2	474.797478	947.580402	0.24093	0.00011439	0.0062956	2.9892E-06	0.24723	0.00011738	474.7974426982547	59.148	0.45129	59.24	58.983	59.434	0.091305					36	15	3	0	0	0	0.010938	2	14361	14361;14414		77.984	24.409	1	503990			25104	7066	14323	14324	31430;31431	31430					0.10451538690904272
LPLHVGLTV	9	Unmodified	_LPLHVGLTV_					0	0	0		ENSG00000178623|ENST00000407714|GPR35;nc|ENSG00000178623|Q9HC97-2|GPR35	ENSG00000178623|ENST00000407714|GPR35	ENSG00000178623|ENST00000407714|GPR35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.7975158691406	2	474.797478	947.580402	0.3599	0.00017088	-0.0014228	-6.7553E-07	0.35848	0.0001702	474.7974141225909	59.205	0.45018	59.19	58.977	59.427	-0.014267					34	15	3	0	0	0	0.0046213	1	14404	14404		89.427	15.03	1	542810			25105	7066	14323	14324	31432	31432					0.10451538690904272
LPLIKSSI	8	Unmodified	_LPLIKSSI_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2507629394531	2	435.786579	869.558604	-0.14832	-6.4635E-05	0.24176	0.00010535	0.093437	4.0719E-05	435.7866166793403	69.494	0.61902	69.472	69.267	69.886	-0.022087					33	22	2	0	0	0	0.31375	1	17508	17508		8.5933	0	1	364540	+		25106	17663	14324	14325	31433	31433					0.11860733942330626
LPLISLRI	8	Unmodified	_LPLISLRI_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant;VPS13A|p.L1845Vfs*28|1|0.03|ENSG00000197969|chr9:77321285-77321286|-/GTACATT|frameshift_variant;VPS13A|p.Y1116Ifs*27|1|0.25|ENSG00000197969|chr9:77293345-77293345|T/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.81610107421875	2	462.81567	923.616788	0.058013	2.6849E-05	0.1444	6.6829E-05	0.20241	9.3678E-05	462.8157532939148	71.43	0.56417	71.43	71.209	71.773	0					24	19	2	0	0	0	0.25352	1	18169	18169		36.127	2.0246	1	335480			25107	8020	14325	14326	31434	31434					0.15192415587591768
LPLISLRI	8	Unmodified	_LPLISLRI_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant;VPS13A|p.L1845Vfs*28|1|0.03|ENSG00000197969|chr9:77321285-77321286|-/GTACATT|frameshift_variant;VPS13A|p.Y1116Ifs*27|1|0.25|ENSG00000197969|chr9:77293345-77293345|T/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	462.81567	923.616788	0.036901	1.7078E-05	-0.00064853	-3.0015E-07	0.036252	1.6778E-05	462.815623710865	71.356	0.6369	71.416	71.179	71.816	0.060783	-0.023978	-5.2126E-05	NaN	36.127	28	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469070			25108	8020	14325	14326							0.15192415587591768
LPLISLRI	8	Unmodified	_LPLISLRI_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant;VPS13A|p.L1845Vfs*28|1|0.03|ENSG00000197969|chr9:77321285-77321286|-/GTACATT|frameshift_variant;VPS13A|p.Y1116Ifs*27|1|0.25|ENSG00000197969|chr9:77293345-77293345|T/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	462.81567	923.616788	0.28123	0.00013016	0.032839	1.5198E-05	0.31407	0.00014536	462.81568634717695	71.502	0.39425	71.475	71.236	71.63	-0.027275	0.034698	-2.1129E-05	NaN	36.127	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379040			25109	8020	14325	14326							0.15192415587591768
LPLIVNLI	8	Unmodified	_LPLIVNLI_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6;nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5	ENSG00000137040|ENST00000259569|RANBP6;nc|ENSG00000065150|O00410-2|IPO5	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.80474853515625	2	447.804771	893.59499	0.11673	5.2272E-05	-0.13605	-6.0925E-05	-0.019323	-8.6528E-06	447.8046137246273	93.63	1.1523	93.63	93.224	94.376	0					219	96	3	0	0	0	0.028313	3	24934	24898;24934;24976		90.836	0	1	1062600			25110	4022;806	14326	14327	31435;31436;31437	31436					0.1439361083902213
LPLIVNLI	8	Unmodified	_LPLIVNLI_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6;nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5	ENSG00000137040|ENST00000259569|RANBP6;nc|ENSG00000065150|O00410-2|IPO5	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.8046875	2	447.804771	893.59499	0.12308	5.5114E-05	-0.10007	-4.4811E-05	0.023007	1.0303E-05	447.8046414109533	93.481	1.144	93.568	93.173	94.317	0.08667					204	92	3	0	0	0	0.018305	3	24892	24854;24892;24929		104.31	0	1	1730200			25111	4022;806	14326	14327	31438;31439;31440	31439					0.1439361083902213
LPLIVNLI	8	Unmodified	_LPLIVNLI_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6;nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5	ENSG00000137040|ENST00000259569|RANBP6;nc|ENSG00000065150|O00410-2|IPO5	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.8049011230469	2	447.804771	893.59499	0.37064	0.00016598	-0.33666	-0.00015076	0.033982	1.5217E-05	447.80452454939115	93.63	1.0117	93.629	93.209	94.221	-0.00050354					185	78	3	0	0	0	0.028313	3	24890	24890;24930;24970		90.836	0	1	1430300			25112	4022;806	14326	14327	31441;31442;31443	31441					0.1439361083902213
LPLIVNTV	8	Unmodified	_LPLIVNTV_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000558338.1_1_15:62199375-62209725:-|nuORF	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.25115966796875	2	434.778754	867.542954	0.024649	1.0717E-05	0.18459	8.0256E-05	0.20924	9.0973E-05	434.77884494286127	69.174	0.92043	69.246	68.854	69.775	0.071938					56	32	3	0	0	0	0.26527	1	17444	17444		28.487	0	1	354270			25113	3405	14327	14328	31444	31444					0.10388447425282266
LPLIVNTV	8	Unmodified	_LPLIVNTV_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000558338.1_1_15:62199375-62209725:-|nuORF	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2510681152344	2	434.778754	867.542954	-0.13629	-5.9255E-05	0.15978	6.947E-05	0.023493	1.0214E-05	434.7788622114393	69.198	0.85571	69.178	68.738	69.593	-0.02021					54	30	3	0	0	0	0.23297	1	17456	17456		36.044	7.5574	1	407390			25114	3405	14327	14328	31445	31445					0.10388447425282266
LPLKKFCV	8	Unmodified	_LPLKKFCV_					0	0	0			REV__ENST00000482704.1_1_2:96688855-96689146:-|nuORF	REV__ENST00000482704.1_1_2:96688855-96689146:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2908020019531	2	474.290974	946.567395	0.11852	5.6214E-05	-0.015725	-7.458E-06	0.1028	4.8756E-05	474.29087456331933	73.091	2.012	73.091	72.667	74.679	0					175	70	4	0	0	0	0.44842	1	18862	18862		6.3541	0	1	1679500	+		25115	21506	14328	14329	31446	31446					0.09197384307151424
LPLKKFCV	8	Unmodified	_LPLKKFCV_					0	0	0			REV__ENST00000482704.1_1_2:96688855-96689146:-|nuORF	REV__ENST00000482704.1_1_2:96688855-96689146:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2908020019531	2	474.290974	946.567395	0.31199	0.00014797	-0.22785	-0.00010807	0.084139	3.9906E-05	474.2907630028151	73.107	1.9609	73.078	72.684	74.644	-0.029305					173	70	4	0	0	0	0.44842	1	18871	18871		6.3541	0	1	1742200	+		25116	21506	14328	14329	31447	31447					0.09197384307151424
LPLKKFCV	8	Unmodified	_LPLKKFCV_					0	0	0			REV__ENST00000482704.1_1_2:96688855-96689146:-|nuORF	REV__ENST00000482704.1_1_2:96688855-96689146:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	474.290974	946.567395	0.11852	5.6214E-05	-0.015725	-7.458E-06	0.1028	4.8756E-05	474.29087456331933	73.091	2.012	73.091	72.667	74.679	0	0.006561	9.1618E-05	NaN	6.3541	175	70	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1679500	+		25117	21506	14328	14329							0.09197384307151424
LPLKKFCV	8	Unmodified	_LPLKKFCV_					0	0	0			REV__ENST00000482704.1_1_2:96688855-96689146:-|nuORF	REV__ENST00000482704.1_1_2:96688855-96689146:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	474.290974	946.567395	0.31199	0.00014797	-0.22785	-0.00010807	0.084139	3.9906E-05	474.2907630028151	73.107	1.9609	73.078	72.684	74.644	-0.029305	-0.006561	-0.0001096	NaN	6.3541	173	70	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1742200	+		25118	21506	14328	14329							0.09197384307151424
LPLKLSLL	8	Unmodified	_LPLKLSLL_					0	0	0			REV__ENST00000549850.1_1_14:31917543-31917612:-|nuORF	REV__ENST00000549850.1_1_14:31917543-31917612:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.7582092285156	2	448.812596	895.61064	0.29941	0.00013438	-0.20118	-9.0293E-05	0.098223	4.4084E-05	448.8123946583743	68.845	0.50725	68.845	68.616	69.123	0					26	17	3	0	0	0	0.32537	1	17344	17344		24.021	0	1	119320	+		25119	22200	14329	14330	31448	31448					0.15865897356093228
LPLKPGSL	8	Unmodified	_LPLKPGSL_					0	0	0		ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	ENSG00000102313|ENST00000218436|ITIH6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2096862792969	2	412.765646	823.516739	0.32442	0.00013391	1.3391	0.00055273	1.6635	0.00068664	412.7666863176359	36.796	1.9251	36.883	36.336	38.261	0.08741					117	69	2	0	0	0	0.34046	1	7933	7933		5.2307	2.6532	1	237010			25120	1762	14330	14331	31449	31449					0.09792178253815109
LPLKVKPTL	9	Unmodified	_LPLKVKPTL_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7794494628906	2	504.844428	1007.6743	0.38795	0.00019585	-0.189	-9.5417E-05	0.19895	0.00010044	504.8442765412303	68.818	0.39516	68.89	68.705	69.1	0.071938					22	14	2	0	0	0	0.25417	1	17410	17410		8.5933	1.304	1	107320			25121	4869	14331	14332	31450	31450					0.17077257793187073
LPLKVLVV	8	Unmodified	_LPLKVLVV_					0	0	0		nc|ENSG00000130224|Q5VUJ6-2|LRCH2;ENSG00000130224|ENST00000317135|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.75	2	440.815139	879.615725	0.16772	7.3935E-05	-0.24649	-0.00010866	-0.078769	-3.4722E-05	440.81494670609544	62.198	0.39233	62.198	62.084	62.476	0					26	14	2	0	0	0	0.28969	1	15366	15366		36.044	7.5574	1	222960			25122	3458	14332	14333	31451	31451					0.17110201218713428
LPLKVLVV	8	Unmodified	_LPLKVLVV_					0	0	0		nc|ENSG00000130224|Q5VUJ6-2|LRCH2;ENSG00000130224|ENST00000317135|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.7499694824219	2	440.815139	879.615725	0.16256	7.1657E-05	-0.36224	-0.00015968	-0.19968	-8.8023E-05	440.8149161672686	62.238	0.43249	62.23	62.008	62.441	-0.0085526					28	15	2	0	0	0	0.31934	1	15348	15348		24.674	8.9057	1	165930			25123	3458	14332	14333	31452	31452					0.17110201218713428
LPLKVVLVEL	10	Unmodified	_LPLKVVLVEL_					0	0	0			REV__ENSG00000142185|ENST00000397928|TRPM2	REV__ENSG00000142185|ENST00000397928|TRPM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.758544921875	2	561.878468	1121.74238	0.069507	3.9054E-05	-2.426	-0.0013631	-2.3565	-0.0013241	561.876925290771	31.325	0.38263	31.325	31.171	31.553	0					33	13	3	0	0	0	0.31358	1	5883	5883		13.906	0	1	231020	+		25124	16105	14333	14334	31453	31453					0.1863808265318312
LPLLAEVI	8	Unmodified	_LPLLAEVI_					0	0	0		ENSG00000103540|ENST00000694978|CCP110;nc|ENSG00000103540|O43303|CCP110	ENSG00000103540|ENST00000694978|CCP110	ENSG00000103540|ENST00000694978|CCP110	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.84259033203125	2	434.281129	866.547705	0.59908	0.00026017	-0.48945	-0.00021256	0.10963	4.7612E-05	434.2826505856825	50.481	0.46057	50.502	50.252	50.712	0.020691					23	16	2	0	0	0	0.34147	1	11707	11707		6.3541	0	1	109920			25125	1841	14334	14335	31454	31454					0.10909331568029756
LPLLFWPGL	9	Unmodified	_LPLLFWPGL_					0	0	0		ENST00000479005.1_1_10:75010434-75010512:-|nuORF	ENST00000479005.1_1_10:75010434-75010512:-|nuORF	ENST00000479005.1_1_10:75010434-75010512:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3193359375	2	528.318046	1054.62154	0.56647	0.00029927	1.5591	0.00082368	2.1255	0.001123	528.3186742938686	17.169	0.47952	17.109	16.731	17.211	-0.060429					22	17	2	0	0	0	0.34374	1	1534	1534		2.3027	0	1	42429			25126	10985	14335	14336	31455	31455					0.09641299730355968
LPLLHPLL	8	Unmodified	_LPLLHPLL_					0	0	0			REV__nc|ENSG00000105576|O14787-2|TNPO2	REV__nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.3048095703125	2	458.304939	914.595324	-0.11785	-5.4009E-05	0.15408	7.0618E-05	0.036239	1.6608E-05	458.3049455739897	75.601	1.1845	75.601	75.154	76.338	0					125	42	4	0	0	0	0.079765	1	19356	19356		64.081	0	1	5756200	+		25127	14466	14336	14337	31456	31456					0.1346103055890353
LPLLHPLL	8	Unmodified	_LPLLHPLL_					0	0	0			REV__nc|ENSG00000105576|O14787-2|TNPO2	REV__nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.30474853515625	2	458.304939	914.595324	0.095722	4.387E-05	-0.076019	-3.484E-05	0.019703	9.0301E-06	458.30471468034943	76.7	1.0355	76.7	76.22	77.256	0					81	37	3	0	0	0	0.079765	1	19738	19738		64.081	0	1	723090	+		25128	14466	14336	14337	31457	31457					0.1346103055890353
LPLLHPLL	8	Unmodified	_LPLLHPLL_					0	0	0			REV__nc|ENSG00000105576|O14787-2|TNPO2	REV__nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.3048095703125	2	458.304939	914.595324	-0.0095766	-4.389E-06	0.021999	1.0082E-05	0.012422	5.6931E-06	458.304783006377	76.66	1.2195	76.713	76.289	77.508	0.053421					82	43	3	0	0	0	0.079765	1	19758	19758		64.081	0	1	613570	+		25129	14466	14336	14337	31458	31458					0.1346103055890353
LPLLHPLL	8	Unmodified	_LPLLHPLL_					0	0	0			REV__nc|ENSG00000105576|O14787-2|TNPO2	REV__nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.304931640625	2	458.304939	914.595324	0.22041	0.00010101	-0.10824	-4.9606E-05	0.11217	5.1407E-05	458.3048100687731	75.692	1.2384	75.66	75.184	76.422	-0.031479					125	45	4	0	0	0	0.052153	1	19516	19516		77.196	0	1	4691100	+		25130	14466	14336	14337	31459	31459					0.1346103055890353
LPLLHPLL	8	Unmodified	_LPLLHPLL_					0	0	0			REV__nc|ENSG00000105576|O14787-2|TNPO2	REV__nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.3048095703125	2	458.304939	914.595324	0.36204	0.00016592	-0.29927	-0.00013716	0.062766	2.8766E-05	458.30462256641573	76.779	0.84238	76.748	76.395	77.237	-0.031479					71	30	3	0	0	0	0.079765	1	19749	19749		64.081	0	1	516150	+		25131	14466	14336	14337	31460	31460					0.1346103055890353
LPLLIQTV	8	Unmodified	_LPLLIQTV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7942810058594	2	448.794404	895.574254	0.34878	0.00015653	-0.60841	-0.00027305	-0.25963	-0.00011652	448.79407993788016	77.193	1.0548	77.249	76.922	77.977	0.055412					79	37	3	0	0	0	0.042854	1	19902	19902		81.613	7.1903	1	925920			25132	1349	14337	14338	31461	31461					0.1222902045938099
LPLLIQTV	8	Unmodified	_LPLLIQTV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	448.794404	895.574254	0.4467	0.00020048	-0.63035	-0.0002829	-0.18365	-8.2421E-05	448.7940529927899	77.278	0.86507	77.278	76.957	77.822	0	0.0042648	3.5157E-05	NaN	81.613	77	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1013200			25133	1349	14337	14338							0.1222902045938099
LPLLIQTV	8	Unmodified	_LPLLIQTV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	448.794404	895.574254	0.60128	0.00026985	-0.79773	-0.00035802	-0.19645	-8.8167E-05	448.7940083776694	77.327	0.88162	77.295	76.93	77.812	-0.031334	0.021104	-0.00011509	NaN	81.613	75	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1036100			25134	1349	14337	14338							0.1222902045938099
LPLLKALGF	9	Unmodified	_LPLLKALGF_					0	0	0			REV__nc|ENSG00000105639|P52333-2|JAK3	REV__nc|ENSG00000105639|P52333-2|JAK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001403808594	2	486.318046	970.621539	0.3307	0.00016082	-0.62083	-0.00030192	-0.29013	-0.0001411	486.3176792778348	66.363	0.29953	66.447	66.3	66.6	0.083832					16	10	2	0	0	0	0.25291	1	16638	16638		9.3474	7.2877	1	80255	+		25135	14471	14338	14339	31462	31462					0.13505299730354636
LPLLKALGF	9	Unmodified	_LPLLKALGF_					0	0	0			REV__nc|ENSG00000105639|P52333-2|JAK3	REV__nc|ENSG00000105639|P52333-2|JAK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002624511719	2	486.318046	970.621539	0.25943	0.00012616	-0.97729	-0.00047527	-0.71786	-0.00034911	486.3176105092771	66.467	0.24464	66.454	66.327	66.572	-0.013596					15	8	2	0	0	0	0.25291	1	16656	16656		9.3474	2.0582	1	95839	+		25136	14471	14338	14339	31463	31463					0.13505299730354636
LPLLKALGF	9	Unmodified	_LPLLKALGF_					0	0	0			REV__nc|ENSG00000105639|P52333-2|JAK3	REV__nc|ENSG00000105639|P52333-2|JAK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	486.318046	970.621539	0.38563	0.00018754	-1.1875	-0.00057749	-0.80184	-0.00038995	486.31744296369493	66.468	0.28888	66.468	66.341	66.63	0	0.01154	-0.0002276	NaN	5.2307	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99080	+		25137	14471	14338	14339							0.13505299730354636
LPLLLHSL	8	Unmodified	_LPLLLHSL_					0	0	0			REV__ENST00000378891.9_3_1:1270760-1271384:-|nuORF	REV__ENST00000378891.9_3_1:1270760-1271384:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7684020996094	2	453.294571	904.574589	0.26075	0.0001182	-0.8363	-0.00037909	-0.57555	-0.0002609	453.29426785425136	64.81	0.3135	64.81	64.621	64.934	0					19	11	2	0	0	0	0.32778	1	16157	16157		14.582	0	1	84548	+		25138	20523	14339	14340	31464	31464					0.11848440179221598
LPLLLHSL	8	Unmodified	_LPLLLHSL_					0	0	0			REV__ENST00000378891.9_3_1:1270760-1271384:-|nuORF	REV__ENST00000378891.9_3_1:1270760-1271384:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7682189941406	2	453.294571	904.574589	0.34295	0.00015546	-0.3604	-0.00016337	-0.017444	-7.9073E-06	453.29450839146386	64.716	0.27641	64.809	64.633	64.909	0.09288					16	9	2	0	0	0	0.29134	1	16118	16118		34.187	0	1	107030	+		25139	20523	14339	14340	31465	31465					0.11848440179221598
LPLLQNITI	9	Unmodified	_LPLLQNITI_					0	0	0		ENST00000525971.6_1_12:85431954-85518298:+|nuORF;nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.78173828125	2	512.823692	1023.63283	0.39724	0.00020371	2.852	0.0014626	3.2493	0.0016663	512.8253398586086	85.75	0.27009	85.834	85.669	85.939	0.084251					15	9	2	0	0	0	0.25417	1	22506	22506		8.5933	0.68312	1	113560			25140	3720	14340	14341	31466	31466					0.12196077033843267
LPLLRALL	8	Unmodified	_LPLLRALL_					0	0	0		ENST00000327876.4_1_2:47747956-47748880:-|nuORF	ENST00000327876.4_1_2:47747956-47748880:-|nuORF	ENST00000327876.4_1_2:47747956-47748880:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.8179626464844	2	454.818213	907.621873	0.092333	4.1995E-05	-0.23066	-0.00010491	-0.13832	-6.2912E-05	454.81806751307107	73.949	0.54975	73.918	73.692	74.241	-0.030663					33	19	2	0	0	0	0.14465	1	18971	18971		52.693	3.0242	1	683010			25141	9428	14341	14342	31467	31467					0.16436719450211967
LPLLRSVL	8	Unmodified	_LPLLRSVL_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33;ENSG00000167700|ENST00000301327|MFSD3;ENST00000528047.5_1_8:145734706-145736158:+|nuORF	ENSG00000109133|ENST00000504986|TMEM33;ENST00000528047.5_1_8:145734706-145736158:+|nuORF	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.8079528808594	2	455.807845	909.601138	0.15406	7.0223E-05	0.12566	5.7278E-05	0.27972	0.0001275	455.80775651553245	63.228	1.0586	63.228	62.637	63.695	0					73	38	3	0	0	0	0.063256	2	15633	15633;15685		71.922	10.565	1	668550			25142	2239;11579	14342	14343	31468;31469	31468					0.1427212907054809
LPLLRSVL	8	Unmodified	_LPLLRSVL_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33;ENSG00000167700|ENST00000301327|MFSD3;ENST00000528047.5_1_8:145734706-145736158:+|nuORF	ENSG00000109133|ENST00000504986|TMEM33;ENST00000528047.5_1_8:145734706-145736158:+|nuORF	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.8077697753906	2	455.807845	909.601138	0.23804	0.0001085	-0.029849	-1.3605E-05	0.20819	9.4894E-05	455.80766708188594	63.129	0.92789	63.225	62.663	63.591	0.095722					71	33	3	0	0	0	0.063256	2	15596	15596;15646		71.922	10.565	1	765720			25143	2239;11579	14342	14343	31470;31471	31470					0.1427212907054809
LPLLRSVL	8	Unmodified	_LPLLRSVL_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33;ENSG00000167700|ENST00000301327|MFSD3;ENST00000528047.5_1_8:145734706-145736158:+|nuORF	ENSG00000109133|ENST00000504986|TMEM33;ENST00000528047.5_1_8:145734706-145736158:+|nuORF	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.8079528808594	2	455.807845	909.601138	0.18191	8.2917E-05	0.025738	1.1732E-05	0.20765	9.4649E-05	455.807730886601	63.236	0.89186	63.228	62.731	63.623	-0.0085526					74	32	3	0	0	0	0.063256	3	15643	15594;15643;15709		71.922	10.609	1	704550			25144	2239;11579	14342	14343	31472;31473;31474	31473					0.1427212907054809
LPLLRVLSI	9	Unmodified	_LPLLRVLSI_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.3497924804688	2	512.349877	1022.6852	0.49477	0.00025349	-0.26326	-0.00013488	0.23151	0.00011862	512.3496485125785	77.159	1.7475	77.159	76.422	78.169	0					168	64	4	0	0	0	0.0024096	3	19909	19909;19956;20046		106.94	28.212	1	2812800			25145	3610	14343	14344	31475;31476;31477	31475					0.17476660167460523
LPLLRVLSI	9	Unmodified	_LPLLRVLSI_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.349853515625	2	512.349877	1022.6852	0.35298	0.00018085	-0.009952	-5.0989E-06	0.34302	0.00017575	512.3497357629609	77.048	1.6303	77.104	76.425	78.055	0.055412					163	58	5	0	0	0	0.003317	3	19883	19883;19933;19983		99.755	21.027	1	2702500			25146	3610	14343	14344	31478;31479;31480	31478					0.17476660167460523
LPLLRVLSI	9	Unmodified	_LPLLRVLSI_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.349853515625	2	512.349877	1022.6852	0.55296	0.00028331	-0.20388	-0.00010446	0.34908	0.00017885	512.3496825718289	77.222	1.4738	77.191	76.482	77.956	-0.031334					133	53	4	0	0	0	0.0037449	2	19896	19896;19944		96.367	17.639	1	1997200			25147	3610	14343	14344	31481;31482	31481					0.17476660167460523
LPLLTRLAG	9	Unmodified	_LPLLTRLAG_					0	0	0			REV__ENSG00000170558|ENST00000269141|CDH2	REV__ENSG00000170558|ENST00000269141|CDH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.310791015625	2	477.310752	952.606951	0.19319	9.2212E-05	-0.36625	-0.00017481	-0.17305	-8.2601E-05	477.31051486311253	58.095	0.95867	58.095	57.605	58.564	0					42	33	2	0	0	0	0.069366	1	14078	14078		45.7	3.7441	1	285770	+		25148	17585	14344	14345	31483	31483					0.12875227582219395
LPLLTRLAG	9	Unmodified	_LPLLTRLAG_					0	0	0			REV__ENSG00000170558|ENST00000269141|CDH2	REV__ENSG00000170558|ENST00000269141|CDH2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	477.310752	952.606951	0.19319	9.2212E-05	-0.36625	-0.00017481	-0.17305	-8.2601E-05	477.31051486311253	58.095	0.95867	58.095	57.605	58.564	0	-0.032599	-8.1081E-07	NaN	45.7	42	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285770	+		25149	17585	14344	14345							0.12875227582219395
LPLLTRLAG	9	Unmodified	_LPLLTRLAG_					0	0	0			REV__ENSG00000170558|ENST00000269141|CDH2	REV__ENSG00000170558|ENST00000269141|CDH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	477.310752	952.606951	0.49637	0.00023692	-0.36361	-0.00017356	0.13275	6.3365E-05	477.3104124272855	58.178	0.91122	58.16	57.582	58.493	-0.0172	0.032599	1.706E-06	NaN	45.7	75	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	434320	+		25150	17585	14344	14345							0.12875227582219395
LPLLVQRTI	9	Unmodified	_LPLLVQRTI_					0	0	0		ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1;nc|ENSG00000106799|P36897-3|TGFBR1;ENST00000403332.2_1_6:129478670-129479855:-|nuORF;nc|ENSG00000123612|Q8NER5-3|ACVR1C;nc|ENSG00000123612|Q8NER5-4|ACVR1C;ENSG00000123612|ENST00000243349|ACVR1C;ENSG00000107779|ENST00000372037|BMPR1A;ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000106799|ENST00000374994|TGFBR1;ENSG00000107779|ENST00000372037|BMPR1A	ENSG00000106799|ENST00000374994|TGFBR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.844970703125	2	526.844959	1051.67537	0.62529	0.00032943	-0.35719	-0.00018818	0.2681	0.00014125	526.8447802812586	58.483	0.69189	58.483	58.075	58.767	0					48	23	3	0	0	0	0.015924	2	14170	14170;14226		70.332	24.632	1	655170			25151	2102;2146	14345	14346	31484;31485	31484					0.1515947216207678
LPLLVQRTI	9	Unmodified	_LPLLVQRTI_					0	0	0		ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1;nc|ENSG00000106799|P36897-3|TGFBR1;ENST00000403332.2_1_6:129478670-129479855:-|nuORF;nc|ENSG00000123612|Q8NER5-3|ACVR1C;nc|ENSG00000123612|Q8NER5-4|ACVR1C;ENSG00000123612|ENST00000243349|ACVR1C;ENSG00000107779|ENST00000372037|BMPR1A;ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000106799|ENST00000374994|TGFBR1;ENSG00000107779|ENST00000372037|BMPR1A	ENSG00000106799|ENST00000374994|TGFBR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8453979492188	2	526.844959	1051.67537	0.49164	0.00025902	-0.25032	-0.00013188	0.24132	0.00012714	526.8448584427318	58.385	0.734	58.476	58.058	58.792	0.091301					41	25	2	0	0	0	0.015924	2	14159	14159;14221		70.332	24.632	1	409810			25152	2102;2146	14345	14346	31486;31487	31486					0.1515947216207678
LPLLVQRTI	9	Unmodified	_LPLLVQRTI_					0	0	0		ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1;nc|ENSG00000106799|P36897-3|TGFBR1;ENST00000403332.2_1_6:129478670-129479855:-|nuORF;nc|ENSG00000123612|Q8NER5-3|ACVR1C;nc|ENSG00000123612|Q8NER5-4|ACVR1C;ENSG00000123612|ENST00000243349|ACVR1C;ENSG00000107779|ENST00000372037|BMPR1A;ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000106799|ENST00000374994|TGFBR1;ENSG00000107779|ENST00000372037|BMPR1A	ENSG00000106799|ENST00000374994|TGFBR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.84521484375	2	526.844959	1051.67537	0.87069	0.00045872	-0.47957	-0.00025266	0.39112	0.00020606	526.8447478396764	58.48	0.68285	58.465	58.063	58.746	-0.014267					50	24	3	0	0	0	0.015924	1	14164	14164		70.332	18.702	1	620570			25153	2102;2146	14345	14346	31488	31488					0.1515947216207678
LPLLVRVI	8	Unmodified	_LPLLVRVI_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000468620.1_1_13:98670849-98672064:+|nuORF	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.8262634277344	2	461.826038	921.637523	-0.050486	-2.3316E-05	0.38486	0.00017774	0.33438	0.00015442	461.82613315890273	69.497	2.123	69.563	68.899	71.022	0.06604					182	75	4	0	0	0	0.042326	4	17499	17499;17543;17588;17638		81.864	0	1	5841700			25154	806	14346	14347	31489;31490;31491;31492	31489					0.17357005967267014
LPLLVRVI	8	Unmodified	_LPLLVRVI_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000468620.1_1_13:98670849-98672064:+|nuORF	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.8262634277344	2	461.826038	921.637523	0.085484	3.9479E-05	0.21923	0.00010125	0.30471	0.00014072	461.82604216736894	69.551	1.8071	69.529	69	70.807	-0.022087					174	64	4	0	0	0	0.042326	5	17513	17513;17562;17610;17659;17728		81.864	0	1	5083000			25155	806	14346	14347	31493;31494;31495;31496;31497	31493					0.17357005967267014
LPLLVRVI	8	Unmodified	_LPLLVRVI_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000468620.1_1_13:98670849-98672064:+|nuORF	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	461.826038	921.637523	-0.14093	-6.5085E-05	0.4681	0.00021618	0.32717	0.0001511	461.8261642805987	69.574	1.7882	69.574	68.951	70.739	0	0.018688	0.00011076	NaN	81.864	173	64	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5368500			25156	806	14346	14347							0.17357005967267014
LPLLVSALV	9	Unmodified	_LPLLVSALV_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2;ENST00000583241.1_1_17:16331654-16335285:+|nuORF	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.2652587890625	2	462.810054	923.605554	0.11465	5.3062E-05	-0.34855	-0.00016131	-0.2339	-0.00010825	462.80988613127823	88.601	0.52755	88.69	88.494	89.021	0.089203					31	21	2	0	0	0	0.2451	1	23395	23395		15.847	0	1	169600			25157	7700	14347	14348	31498	31498					0.14069593493456978
LPLMLGGDPI	10	Unmodified	_LPLMLGGDPI_					0	0	0			REV__ENST00000564768.1_1_16:30198028-30198313:+|nuORF	REV__ENST00000564768.1_1_16:30198028-30198313:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8091430664062	2	513.288628	1024.5627	0.058487	3.0021E-05	-2.6947	-0.0013831	-2.6362	-0.0013531	513.2848062799212	43.02	0.080315	43.111	43.043	43.123	0.091362					4	2	2	0	0	0	0.35558	1	9396	9396		11.64	0.81637	1	44893	+		25158	14337	14348	14349	31499	31499					0.05140455373725672
LPLNIERNI	9	Unmodified	_LPLNIERNI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.322265625	2	541.321848	1080.62914	0.71809	0.00038872	-0.28699	-0.00015536	0.4311	0.00023336	541.3215709553385	54.195	0.51251	54.179	53.978	54.49	-0.015923					30	17	2	0	0	0	0.058995	1	12862	12862		49.554	15.153	1	598140			25159	2452	14349	14350	31500	31500					0.09205407259969434
LPLNIERNI	9	Unmodified	_LPLNIERNI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.321848	1080.62914	0.72634	0.00039318	-0.68568	-0.00037117	0.040655	2.2007E-05	541.3213217286112	54.087	0.46212	54.087	53.834	54.296	0	-0.046151	-0.00016709	NaN	49.554	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431880			25160	2452	14349	14350							0.09205407259969434
LPLNIERNI	9	Unmodified	_LPLNIERNI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	541.321848	1080.62914	0.57754	0.00031263	-0.65727	-0.00035579	-0.079733	-4.3161E-05	541.321381244443	54.071	0.50143	54.134	53.852	54.353	0.063206	0.0003636	-0.00013633	NaN	49.554	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	483780			25161	2452	14349	14350							0.09205407259969434
LPLNVLFV	8	Unmodified	_LPLNVLFV_					0	0	0			REV__ENSG00000172215|ENST00000304552|CXCR6	REV__ENSG00000172215|ENST00000304552|CXCR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.608154296875	2	457.789121	913.56369	0.21851	0.00010003	-0.4415	-0.00020211	-0.22299	-0.00010208	457.7888764416118	88.727	0.52538	88.727	88.527	89.053	0					59	22	4	0	0	0	0.31934	1	23469	23469		24.674	0	1	315760	+		25162	17700	14350	14351	31501	31501					0.10345037804950152
LPLNVLFV	8	Unmodified	_LPLNVLFV_					0	0	0			REV__ENSG00000172215|ENST00000304552|CXCR6	REV__ENSG00000172215|ENST00000304552|CXCR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.6081237792969	2	457.789121	913.56369	0.20061	9.1836E-05	0.39714	0.00018181	0.59775	0.00027364	457.78973435457027	88.625	0.91198	88.714	88.494	89.406	0.089195					66	41	3	0	0	0	0.31934	1	23421	23421		24.674	0	1	411170	+		25163	17700	14350	14351	31502	31502					0.10345037804950152
LPLNVLFV	8	Unmodified	_LPLNVLFV_					0	0	0			REV__ENSG00000172215|ENST00000304552|CXCR6	REV__ENSG00000172215|ENST00000304552|CXCR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.608154296875	2	457.789121	913.56369	0.24341	0.00011143	0.26971	0.00012347	0.51312	0.0002349	457.7895315282846	88.802	0.84982	88.8	88.506	89.356	-0.0017776					61	35	3	0	0	0	0.33245	1	23452	23452		19.439	0	1	389610	+		25164	17700	14350	14351	31503	31503					0.10345037804950152
LPLPCPLLL	9	Unmodified	_LPLPCPLLL_					0	0	0		ENSG00000170128|ENST00000304244|GPR25	ENSG00000170128|ENST00000304244|GPR25	ENSG00000170128|ENST00000304244|GPR25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.8092956542969	2	489.806457	977.598361	0.35192	0.00017237	2.833	0.0013876	3.1849	0.00156	489.8071168237194	57.068	0.88673	57.146	56.543	57.43	0.078674					42	32	2	0	0	0	0.16905	1	13755	13755		28.173	7.302	1	393970			25165	6424	14351	14352	31504	31504					0.10866537621382122
LPLPHFDTI	9	Unmodified	_LPLPHFDTI_					0	0	0		TPX2|p.E658Dfs*24|1|0.32|ENSG00000088325|chr20:31798392-31798392|A/-|frameshift_variant;ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	TPX2|p.E658Dfs*24|1|0.32|ENSG00000088325|chr20:31798392-31798392|A/-|frameshift_variant	TPX2|p.E658Dfs*24|1|0.32|ENSG00000088325|chr20:31798392-31798392|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7925415039062	2	526.792392	1051.57023	0.5251	0.00027662	-0.29725	-0.00015659	0.22785	0.00012003	526.7922946700847	66.869	1.2238	66.869	66.423	67.647	0					96	42	4	0	0	0	1.576E-05	4	16722	16682;16722;16770;16815		154.46	80.067	1	2709000			25166	1321	14352	14353	31505;31506;31507;31508	31506					0.046509309656585174
LPLPHFDTI	9	Unmodified	_LPLPHFDTI_					0	0	0		TPX2|p.E658Dfs*24|1|0.32|ENSG00000088325|chr20:31798392-31798392|A/-|frameshift_variant;ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	TPX2|p.E658Dfs*24|1|0.32|ENSG00000088325|chr20:31798392-31798392|A/-|frameshift_variant	TPX2|p.E658Dfs*24|1|0.32|ENSG00000088325|chr20:31798392-31798392|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.79248046875	2	526.792392	1051.57023	0.4407	0.00023216	-0.20617	-0.00010861	0.23453	0.00012355	526.7923270820484	66.726	1.1078	66.809	66.386	67.493	0.083832					108	39	4	0	0	0	1.576E-05	4	16670	16670;16722;16778;16843		154.46	90.901	1	3154700			25167	1321	14352	14353	31509;31510;31511;31512	31509					0.046509309656585174
LPLPHFDTI	9	Unmodified	_LPLPHFDTI_					0	0	0		TPX2|p.E658Dfs*24|1|0.32|ENSG00000088325|chr20:31798392-31798392|A/-|frameshift_variant;ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	TPX2|p.E658Dfs*24|1|0.32|ENSG00000088325|chr20:31798392-31798392|A/-|frameshift_variant	TPX2|p.E658Dfs*24|1|0.32|ENSG00000088325|chr20:31798392-31798392|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.79248046875	2	526.792392	1051.57023	0.33959	0.00017889	-0.085321	-4.4947E-05	0.25426	0.00013394	526.7923860935774	66.876	1.2674	66.862	66.379	67.647	-0.013596					103	44	4	0	0	0	2.4571E-07	4	16750	16705;16750;16811;16857		170.55	84.43	1	3219400			25168	1321	14352	14353	31513;31514;31515;31516	31514					0.046509309656585174
LPLPHPLL	8	Unmodified	_LPLPHPLL_					0	0	0		ENST00000558517.2_1_15:35591103-35591226:-|nuORF	ENST00000558517.2_1_15:35591103-35591226:-|nuORF	ENST00000558517.2_1_15:35591103-35591226:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2472839355469	2	450.289288	898.564024	0.20261	9.1232E-05	-0.34805	-0.00015673	-0.14545	-6.5494E-05	450.2890461641746	67.971	0.44795	67.955	67.727	68.175	-0.016296					22	15	2	0	0	0	0.26384	1	17066	17066		41.817	0	1	200540			25169	11876	14353	14354	31517	31517					0.11068457524800124
LPLPIGTITI	10	Unmodified	_LPLPIGTITI_					0	0	0		ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2874755859375	2	519.333893	1036.65323	0.48532	0.00025205	-0.63143	-0.00032792	-0.14611	-7.5878E-05	519.3336476357291	89.579	0.55389	89.579	89.41	89.963	0					67	41	2	0	0	0	0.18324	1	23735	23735		52.268	0	1	185870			25170	1052	14354	14355	31518	31518					0.13637247693668542
LPLPIGTITI	10	Unmodified	_LPLPIGTITI_					0	0	0		ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2875366210938	2	519.333893	1036.65323	0.40773	0.00021175	-0.46545	-0.00024172	-0.057722	-2.9977E-05	519.3337872754859	89.511	0.52839	89.602	89.393	89.921	0.090561					68	38	2	0	0	0	0.13991	1	23709	23709		61.357	0	1	248600			25171	1052	14354	14355	31519	31519					0.13637247693668542
LPLPIGTITI	10	Unmodified	_LPLPIGTITI_					0	0	0		ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2879638671875	2	519.333893	1036.65323	0.4356	0.00022622	-0.75648	-0.00039286	-0.32088	-0.00016664	519.3336673124057	89.617	0.47803	89.616	89.448	89.926	-0.00080872					69	39	2	0	0	0	0.13991	1	23700	23700		52.268	0	1	210820			25172	1052	14354	14355	31520	31520					0.13637247693668542
LPLPLPMVSL	10	Unmodified	_LPLPLPMVSL_					0	0	0		chr1:206064568-206097733|184|13.77|0.05|8.08|+|0|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064568|None,RHEX|1;chr1:206064480-206097733|349|14.72|0.16|6.54|+|1|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064480|None,RHEX|1;chr1:206064304-206097733|435|24.52|0.63|5.27|+|0|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064304|None,RHEX|1;chr1:206064097-206097733|315|13.56|0.19|6.12|+|0|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064097|None,RHEX|1	chr1:206064568-206097733|184|13.77|0.05|8.08|+|0|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064568|None,RHEX|1	chr1:206064568-206097733|184|13.77|0.05|8.08|+|0|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064568|None,RHEX|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8427734375	2	540.330296	1078.64604	0.41612	0.00022484	0.42372	0.00022895	0.83984	0.00045379	540.3305272316386	66.745	1.4261	66.731	65.999	67.425	-0.013596					91	50	3	0	0	0	0.33268	1	16804	16804		15.847	15.847	1	1782700			25173	112	14355	14356	31521	31521					0.10986191821598368
LPLPLPSL	8	Unmodified	_LPLPLPSL_					0	0	0			REV__ENST00000607726.1_1_1:214161346-214161979:+|nuORF	REV__ENST00000607726.1_1_1:214161346-214161979:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.2757873535156	2	425.275847	848.537141	-0.20833	-8.8596E-05	0.40939	0.0001741	0.20106	8.5507E-05	425.27590426454236	80.387	0.75189	80.452	80.131	80.883	0.065094					66	28	3	0	0	0	0.065483	1	20871	20871		70.865	0	1	911100	+		25174	22667	14356	14357	31522	31522					0.10681348913624333
LPLPLPTV	8	Unmodified	_LPLPLPTV_					0	0	0		SVA_D_dup1229|chr17:30522805-30524227:+|1.3285429955376928|0.476847412502663|1.48|542.0|24|3|sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.3285429955376928|0.476847412502663|1.48|542.0|24|3|sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.3285429955376928|0.476847412502663|1.48|542.0|24|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.2759094238281	2	425.275847	848.537141	-0.20833	-8.8596E-05	0.40939	0.0001741	0.20106	8.5507E-05	425.27590426454236	80.387	0.75189	80.452	80.131	80.883	0.065094					66	28	3	0	0	0	0.040061	1	20918	20918		82.939	0	1	911100			25175	23383	14357	14358	31523	31523					0.10681348913612965
LPLPLPTV	8	Unmodified	_LPLPLPTV_					0	0	0		SVA_D_dup1229|chr17:30522805-30524227:+|1.3285429955376928|0.476847412502663|1.48|542.0|24|3|sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.3285429955376928|0.476847412502663|1.48|542.0|24|3|sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.3285429955376928|0.476847412502663|1.48|542.0|24|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.2757568359375	2	425.275847	848.537141	-0.030521	-1.298E-05	0.0099033	4.2116E-06	-0.020618	-8.7684E-06	425.2757389323125	80.536	0.75953	80.509	80.142	80.901	-0.026825					64	27	3	0	0	0	0.065483	1	20887	20887		70.865	0	1	986490			25176	23383	14357	14358	31524	31524					0.10681348913612965
LPLPLPTV	8	Unmodified	_LPLPLPTV_					0	0	0		SVA_D_dup1229|chr17:30522805-30524227:+|1.3285429955376928|0.476847412502663|1.48|542.0|24|3|sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.3285429955376928|0.476847412502663|1.48|542.0|24|3|sense	SVA_D_dup1229|chr17:30522805-30524227:+|1.3285429955376928|0.476847412502663|1.48|542.0|24|3|sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	425.275847	848.537141	-0.077308	-3.2877E-05	0.1311	5.5754E-05	0.053794	2.2877E-05	425.27579334583254	80.522	0.77952	80.522	80.124	80.904	0	0.027863	-7.3382E-05	NaN	82.939	68	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1120200			25177	23383	14357	14358							0.10681348913612965
LPLPNFSSL	9	Unmodified	_LPLPNFSSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2795715332031	2	494.279118	986.543683	0.38035	0.000188	0.18193	8.9926E-05	0.56228	0.00027792	494.2793799820385	81.576	1.1646	81.576	81.123	82.287	0					146	46	4	0	0	0	0.0010463	6	21263	21218;21263;21303;21352;21403;21457		122.18	64.121	1	11128000			25178	537	14358	14359	31525;31526;31527;31528;31529;31530	31526					0.049872420743326984
LPLPNFSSL	9	Unmodified	_LPLPNFSSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2960205078125	2	494.279118	986.543683	0.67321	0.00033276	-0.55203	-0.00027286	0.12118	5.9897E-05	494.2786851255806	83.55	0.45807	83.55	83.427	83.885	0					20	16	2	0	0	0	0.26612	1	21874	21874		13.906	2.2658	1	62738			25179	537	14358	14359	31531	31531					0.049872420743326984
LPLPNFSSL	9	Unmodified	_LPLPNFSSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7889709472656	2	494.279118	986.543683	0.54283	0.00026831	-0.77772	-0.00038441	-0.23489	-0.0001161	494.2788333272861	82.391	0.86063	82.391	82.287	83.148	0					57	32	3	0	0	0	0.16853	1	21507	21507		38.176	13.502	1	160010			25180	537	14358	14359	31532	31532					0.049872420743326984
LPLPNFSSL	9	Unmodified	_LPLPNFSSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2794494628906	2	494.279118	986.543683	0.1301	6.4307E-05	0.37773	0.00018671	0.50784	0.00025101	494.27947501771473	81.549	1.8166	81.618	81.158	82.974	0.068993					217	80	5	0	0	0	0.0019475	4	21221	21183;21221;21269;21314		110.67	56.842	1	11542000			25181	537	14358	14359	31533;31534;31535;31536	31534					0.049872420743326984
LPLPNFSSL	9	Unmodified	_LPLPNFSSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.29681396484375	2	494.279118	986.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.169	1	83.242	82.742	83.742	0.073097								0	0	0	0.20651	1	21738	21738		20.415	4.5674	1				25182	537	14358	14359	31537	31537					0.049872420743326984
LPLPNFSSL	9	Unmodified	_LPLPNFSSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2795104980469	2	494.279118	986.543683	0.37186	0.0001838	0.14282	7.0594E-05	0.51468	0.00025439	494.2793656076692	81.627	1.8104	81.603	81.161	82.971	-0.02404					188	74	5	0	0	0	0.0013036	4	21255	21212;21255;21302;21353		118.89	64.121	1	11735000			25183	537	14358	14359	31538;31539;31540;31541	31539					0.049872420743326984
LPLPNLRVV	9	Unmodified	_LPLPNLRVV_					0	0	0		nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-2|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8321228027344	2	510.831852	1019.64915	0.47552	0.00024291	1.4557	0.00074364	1.9313	0.00098655	510.8327782988397	64.66	1.5422	64.66	63.889	65.431	0					97	55	4	0	0	0	0.034444	3	16073	16035;16073;16121		58.679	29.597	1	1401500			25184	813	14359	14360	31542;31543;31544	31543					0.14011202990593574
LPLPNLRVV	9	Unmodified	_LPLPNLRVV_					0	0	0		nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-2|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8321228027344	2	510.831852	1019.64915	0.40844	0.00020864	1.7118	0.00087444	2.1202	0.0010831	510.83299627032267	64.558	1.7296	64.651	63.927	65.657	0.09288					108	63	4	0	0	0	0.051692	3	16049	15994;16049;16101		52.268	28.248	1	1308000			25185	813	14359	14360	31545;31546;31547	31546					0.14011202990593574
LPLPNLRVV	9	Unmodified	_LPLPNLRVV_					0	0	0		nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-2|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.832275390625	2	510.831852	1019.64915	0.35785	0.0001828	1.5937	0.00081412	1.9516	0.00099691	510.83303562969917	64.622	1.7331	64.612	63.881	65.614	-0.0095367					88	60	3	0	0	0	0.051692	2	16104	16053;16104		52.268	29.12	1	1411500			25186	813	14359	14360	31548;31549	31549					0.14011202990593574
LPLPRSQSI	9	Unmodified	_LPLPRSQSI_					0	0	0		ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000052795|Q9P278-2|FNIP2	ENSG00000052795|ENST00000264433|FNIP2	ENSG00000052795|ENST00000264433|FNIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.80340576171875	2	505.803291	1009.59203	0.30174	0.00015262	0.092296	4.6684E-05	0.39404	0.00019931	505.80334150445134	43.306	0.81056	43.306	42.902	43.713	0					57	29	3	0	0	0	0.011693	1	9482	9482		76.825	18.146	1	1319500			25187	673	14360	14361	31550	31550					0.08761735714222141
LPLPRSQSI	9	Unmodified	_LPLPRSQSI_					0	0	0		ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000052795|Q9P278-2|FNIP2	ENSG00000052795|ENST00000264433|FNIP2	ENSG00000052795|ENST00000264433|FNIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.8034362792969	2	505.803291	1009.59203	0.44549	0.00022533	0.1465	7.4102E-05	0.59199	0.00029943	505.80327169490687	43.106	0.74355	43.187	42.886	43.63	0.080986					54	26	3	0	0	0	0.017549	1	9429	9429		67.838	16.208	1	1389700			25188	673	14360	14361	31551	31551					0.08761735714222141
LPLPRSQSI	9	Unmodified	_LPLPRSQSI_					0	0	0		ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000052795|Q9P278-2|FNIP2	ENSG00000052795|ENST00000264433|FNIP2	ENSG00000052795|ENST00000264433|FNIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.8033447265625	2	505.803291	1009.59203	0.21977	0.00011116	0.26389	0.00013348	0.48366	0.00024464	505.80335702691025	43.1	0.83863	43.184	42.765	43.604	0.083992					64	30	3	0	0	0	0.017549	1	9423	9423		67.838	17.905	1	1713300			25189	673	14360	14361	31552	31552					0.08761735714222141
LPLQCLAS	8	Unmodified	_LPLQCLAS_					0	0	0			REV__ENST00000483582.5_1_3:9974542-9975274:+|nuORF	REV__ENST00000483582.5_1_3:9974542-9975274:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.7317199707031	2	422.733489	843.452425	0.19826	8.381E-05	-2.8168	-0.0011908	-2.6186	-0.001107	422.7315857647607	79.415	1.8299	79.386	78.372	80.202	-0.028931					94	71	2	0	0	0	0.30517	1	20551	20551		30.225	0	1	357150	+		25190	17084	14361	14362	31553	31553					0.02443655105344078
LPLQDLASLS	10	Unmodified	_LPLQDLASLS_					0	0	0		ENSG00000111049|ENST00000228644|MYF5	ENSG00000111049|ENST00000228644|MYF5	ENSG00000111049|ENST00000228644|MYF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8318481445312	2	528.800414	1055.58628	0.46494	0.00024586	1.4612	0.0007727	1.9262	0.0010186	528.8010847569848	43.669	0.4377	43.669	43.467	43.904	0					26	15	2	0	0	0	0.3156	1	9653	9653		6.7232	6.7232	1	174280			25191	2343	14362	14363	31554	31554					0.06070592411901998
LPLQFTQY	8	Unmodified	_LPLQFTQY_					0	0	0			REV__ENST00000474455.1_1_21:35748447-35751776:+|nuORF	REV__ENST00000474455.1_1_21:35748447-35751776:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2702331542969	2	505.271293	1008.52803	0.32778	0.00016562	-0.87944	-0.00044435	-0.55166	-0.00027874	505.2714115078545	81.6	0.96641	81.576	80.966	81.932	-0.02404					76	41	3	0	0	0	0.32038	1	21278	21278		28.487	0.85804	1	761520	+		25192	21395	14363	14364	31555	31555					0.024109555572863428
LPLQPPNHLPG	11	Unmodified	_LPLQPPNHLPG_					0	0	0		nc|ENSG00000102452|Q8IZF0-2|NALCN	nc|ENSG00000102452|Q8IZF0-2|NALCN	nc|ENSG00000102452|Q8IZF0-2|NALCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8228149414062	2	591.835123	1181.65569	0.53565	0.00031702	-2.4169	-0.0014304	-1.8813	-0.0011134	591.833682117351	20.768	0.79643	20.768	20.514	21.31	0					36	27	2	0	0	0	0.44523	1	2620	2620		5.2969	0	1	72757			25193	12625	14364	14365	31556	31556					0.07213096151303944
LPLQREVL	8	Unmodified	_LPLQREVL_					0	0	0		ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENST00000489417.5_1_7:127726971-127732107:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.30072021484375	2	484.300384	966.586216	0.30657	0.00014847	0.1393	6.7464E-05	0.44587	0.00021593	484.3005314490728	53.009	0.90612	53.009	52.767	53.674	0					70	33	3	0	0	0	0.20518	1	12474	12474		42.095	3.9434	1	1924800			25194	11149	14365	14366	31557	31557					0.10158637202562204
LPLQREVL	8	Unmodified	_LPLQREVL_					0	0	0		ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENST00000489417.5_1_7:127726971-127732107:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.3005065917969	2	484.300384	966.586216	0.51866	0.00025119	-0.098367	-4.7639E-05	0.42029	0.00020355	484.300354793192	52.955	0.68485	53.011	52.772	53.457	0.056255					59	24	3	0	0	0	0.33441	1	12517	12517		26.884	0.61551	1	1498300			25195	11149	14365	14366	31558	31558					0.10158637202562204
LPLQREVL	8	Unmodified	_LPLQREVL_					0	0	0		ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENST00000489417.5_1_7:127726971-127732107:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.3006591796875	2	484.300384	966.586216	0.34572	0.00016743	0.004178	2.0234E-06	0.3499	0.00016946	484.3003784571616	53.169	1.367	53.159	52.837	54.204	-0.0096092					81	50	3	0	0	0	0.33441	1	12501	12501		26.884	0.61551	1	1854200			25196	11149	14365	14366	31559	31559					0.10158637202562204
LPLQVLINVLK	11	Unmodified	_LPLQVLINVLK_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.87628173828125	3	417.279591	1248.81694	-0.20418	-8.5201E-05	-2.0452	-0.00085342	-2.2494	-0.00093862	417.2786058796405	25.945	0.47288	25.945	25.798	26.271	0					21	16	2	0	0	0	0.33094	1	4258	4258		2.6312	1.9336	1	114210	+		25197	14895	14366	14367	31560	31560					0.20248845464539045
LPLRAALLL	9	Unmodified	_LPLRAALLL_					0	0	0			REV__ENST00000459927.5_1_7:23286476-23287379:+|nuORF	REV__ENST00000459927.5_1_7:23286476-23287379:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2572937011719	2	490.33677	978.658987	0.087024	4.2671E-05	0.31692	0.0001554	0.40395	0.00019807	490.3367998503326	81.711	0.56224	81.78	81.507	82.069	0.068993					38	24	2	0	0	0	0.24311	1	21234	21234		16.942	4.4107	1	63838	+		25198	15798	14367	14368	31561	31561					0.16880390995981998
LPLRAALLL	9	Unmodified	_LPLRAALLL_					0	0	0			REV__ENST00000459927.5_1_7:23286476-23287379:+|nuORF	REV__ENST00000459927.5_1_7:23286476-23287379:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.3369140625	2	490.33677	978.658987	0.60521	0.00029676	-0.23835	-0.00011687	0.36686	0.00017988	490.33709103568157	75.086	1.6462	75.055	74.7	76.346	-0.031487					198	60	5	0	0	0	0.24581	1	19592	19592		16.942	0	1	35649000	+		25199	15798	14367	14368	31562	31562					0.16880390995981998
LPLRCGLTF	9	Unmodified	_LPLRCGLTF_					0	0	0			REV__nc|ENSG00000181781|Q3SX64-2|CIMAP1D	REV__nc|ENSG00000181781|Q3SX64-2|CIMAP1D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2983703613281	2	510.288963	1018.56337	0.42892	0.00021887	0.23564	0.00012025	0.66456	0.00033912	510.2891752782174	54.278	0.84036	54.263	53.865	54.706	-0.015923					55	29	3	0	0	0	0.079066	2	12926	12900;12926		42.095	15.753	1	1120500	+		25200	18164	14368	14369	31563;31564	31564					0.054832948134276194
LPLRCGLTF	9	Unmodified	_LPLRCGLTF_					0	0	0			REV__nc|ENSG00000181781|Q3SX64-2|CIMAP1D	REV__nc|ENSG00000181781|Q3SX64-2|CIMAP1D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.787841796875	2	510.288963	1018.56337	0.42892	0.00021887	0.23564	0.00012025	0.66456	0.00033912	510.2891752782174	54.278	0.84036	54.263	53.865	54.706	-0.015923					55	29	3	0	0	0	0.14099	1	12876	12876		42.095	22.656	1	1120500	+		25201	18164	14368	14369	31565	31565					0.054832948134276194
LPLRCLARRL	10	Unmodified	_LPLRCLARRL_					0	0	0			REV__ENSG00000160606|ENST00000292090|TLCD1	REV__ENSG00000160606|ENST00000292090|TLCD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.5802001953125	3	404.257015	1209.74922	-0.091071	-3.6816E-05	-2.6625	-0.0010763	-2.7536	-0.0011131	404.2559835578834	31.837	0.29121	31.837	31.719	32.01	0					13	9	2	0	0	0	0.31942	1	5962	5962		3.5871	0	1	179370	+		25202	16909	14369	14370	31566	31566					0.15273117052743146
LPLRGPLL	8	Unmodified	_LPLRGPLL_					0	0	0			REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.79449462890625	2	439.794738	877.574923	-0.12722	-5.5951E-05	0.12371	5.4407E-05	-0.0035112	-1.5442E-06	439.7946811837916	59.623	1.1184	59.623	59.241	60.359	0					84	39	3	0	0	0	0.13961	2	14640	14532;14640		53.576	9.1686	1	960290	+		25203	19989	14370	14371	31567;31568	31568					0.13123859899098989
LPLRGPLL	8	Unmodified	_LPLRGPLL_					0	0	0			REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.7946472167969	2	439.794738	877.574923	-0.11706	-5.1482E-05	0.12487	5.4919E-05	0.0078152	3.4371E-06	439.79470239824803	59.462	0.91685	59.557	59.16	60.077	0.095093					75	32	3	0	0	0	0.10069	3	14549	14490;14549;14599		60.39	19.941	1	1153800	+		25204	19989	14370	14371	31569;31570;31571	31570					0.13123859899098989
LPLRGPLL	8	Unmodified	_LPLRGPLL_					0	0	0			REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.7948913574219	2	439.794738	877.574923	0.21394	9.409E-05	0.046672	2.0526E-05	0.26061	0.00011462	439.7946176512215	59.55	0.93891	59.539	59.199	60.137	-0.011486					73	32	3	0	0	0	0.082568	3	14542	14494;14542;14595		63.563	23.114	1	963700	+		25205	19989	14370	14371	31572;31573;31574	31573					0.13123859899098989
LPLRGPLL	8	Unmodified	_LPLRGPLL_					0	0	0			REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.2418212890625	2	439.794738	877.574923	0.21394	9.409E-05	0.046672	2.0526E-05	0.26061	0.00011462	439.7946176512215	59.55	0.93891	59.539	59.199	60.137	-0.011486					73	32	3	0	0	0	0.26527	1	14678	14678		44.407	14.182	1	963700	+		25206	19989	14370	14371	31575	31575					0.13123859899098989
LPLRLFLI	8	Unmodified	_LPLRLFLI_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.8019714355469	2	492.833863	983.653173	0.50654	0.00024964	-0.52715	-0.0002598	-0.020614	-1.0159E-05	492.8334570002349	82.524	0.61135	82.524	82.313	82.925	0					46	22	3	0	0	0	0.26527	1	21531	21531		44.407	6.2558	1	410120			25207	1476	14371	14372	31576	31576					0.160692924843147
LPLRMLLI	8	Oxidation (M)	_LPLRM(Oxidation (M))LLI_		LPLRM(1)LLI		LPLRM(54)LLI	0	0	1		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-11|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2;ENST00000525692.1_1_11:85406240-85407481:-|nuORF;nc|ENSG00000137501|Q9HCH5-4|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;chr11:85711232-85718790|489|16.47|0.98|4.07|-|ENST00000389958|SYTL2,SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.81744384765625	2	492.817356	983.620159	0.41403	0.00020404	-0.12609	-6.214E-05	0.28794	0.0001419	492.8172409610533	64.816	1.0936	64.816	64.483	65.577	0					91	39	4	0	0	0	0.13961	1	16152	16152		53.576	6.6547	1	2568400			25208	4054	14372	14373	31577	31577		512			0.1276934236998386
LPLRMLLI	8	Oxidation (M)	_LPLRM(Oxidation (M))LLI_		LPLRM(1)LLI		LPLRM(54)LLI	0	0	1		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-11|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2;ENST00000525692.1_1_11:85406240-85407481:-|nuORF;nc|ENSG00000137501|Q9HCH5-4|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;chr11:85711232-85718790|489|16.47|0.98|4.07|-|ENST00000389958|SYTL2,SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.81744384765625	2	492.817356	983.620159	0.47705	0.0002351	-0.21471	-0.00010581	0.26234	0.00012929	492.8172279098709	64.703	1.1863	64.796	64.471	65.657	0.092888					99	43	4	0	0	0	0.13961	2	16114	16114;16168		53.576	6.6547	1	2443200			25209	4054	14372	14373	31578;31579	31578		512			0.1276934236998386
LPLRMLLI	8	Oxidation (M)	_LPLRM(Oxidation (M))LLI_		LPLRM(1)LLI		LPLRM(54)LLI	0	0	1		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;nc|ENSG00000137501|Q9HCH5-11|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2;ENST00000525692.1_1_11:85406240-85407481:-|nuORF;nc|ENSG00000137501|Q9HCH5-4|SYTL2;nc|ENSG00000137501|Q9HCH5-9|SYTL2;chr11:85711232-85718790|489|16.47|0.98|4.07|-|ENST00000389958|SYTL2,SYTL2;nc|ENSG00000137501|Q9HCH5-2|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8175048828125	2	492.817356	983.620159	0.31749	0.00015646	-0.026102	-1.2863E-05	0.29138	0.0001436	492.817288508432	64.844	1.0924	64.834	64.494	65.587	-0.010399					88	39	4	0	0	0	0.13961	1	16147	16147		53.576	6.6547	1	2481300			25210	4054	14372	14373	31580	31580		512			0.1276934236998386
LPLRRSLPA	9	Unmodified	_LPLRRSLPA_					0	0	0			REV__ENST00000400274.5_1_21:47878895-47878943:+|nuORF	REV__ENST00000400274.5_1_21:47878895-47878943:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.82720947265625	2	511.827101	1021.63965	0.27129	0.00013886	0.029703	1.5203E-05	0.301	0.00015406	511.82710824101855	32.826	0.52391	32.881	32.675	33.199	0.055309					43	18	3	0	0	0	0.25314	1	6296	6296		15.847	0	1	501270	+		25211	20701	14373	14374	31581	31581					0.12969434705087224
LPLRRSLPA	9	Unmodified	_LPLRRSLPA_					0	0	0			REV__ENST00000400274.5_1_21:47878895-47878943:+|nuORF	REV__ENST00000400274.5_1_21:47878895-47878943:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	511.827101	1021.63965	0.27129	0.00013886	0.029703	1.5203E-05	0.301	0.00015406	511.82710824101855	32.826	0.52391	32.881	32.675	33.199	0.055309	-0.032234	-0.00010004	NaN	15.847	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501270	+		25212	20701	14373	14374							0.12969434705087224
LPLRVAEI	8	Unmodified	_LPLRVAEI_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.78961181640625	2	455.789653	909.564752	0.12448	5.6736E-05	0.076433	3.4837E-05	0.20091	9.1574E-05	455.7896144356618	52.835	0.62268	52.834	52.578	53.2	-0.00080872					49	22	3	0	0	0	0.048928	1	12464	12464		78.728	3.799	1	1626100			25213	7580	14374	14375	31582	31582					0.1063525217384722
LPLRVAEI	8	Unmodified	_LPLRVAEI_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	455.789653	909.564752	0.19414	8.8487E-05	0.13643	6.2185E-05	0.33057	0.00015067	455.78959494228684	52.801	0.53906	52.801	52.523	53.062	0	-0.01364	0.00010108	NaN	78.728	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1436800			25214	7580	14374	14375							0.1063525217384722
LPLRVAEI	8	Unmodified	_LPLRVAEI_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	455.789653	909.564752	0.38351	0.0001748	-0.062291	-2.8391E-05	0.32122	0.00014641	455.7895347946095	52.759	0.60842	52.809	52.579	53.187	0.050575	-0.0054499	-8.0077E-05	NaN	78.728	55	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1534600			25215	7580	14374	14375							0.1063525217384722
LPLRVLIV	8	Unmodified	_LPLRVLIV_					0	0	0		ENST00000470184.1_1_7:100179334-100179876:-|nuORF;ENSG00000077454|ENST00000310300|LRCH4	ENST00000470184.1_1_7:100179334-100179876:-|nuORF	ENST00000470184.1_1_7:100179334-100179876:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.82611083984375	2	461.826038	921.637523	0.045228	2.0887E-05	0.26473	0.00012226	0.30996	0.00014315	461.8260619572834	66.79	0.82301	66.79	66.545	67.368	0					68	28	4	0	0	0	0.15515	2	16736	16736;16782		50.855	0	1	952650			25216	1089	14375	14376	31583;31584	31583					0.17357005967278383
LPLRVLIV	8	Unmodified	_LPLRVLIV_					0	0	0		ENST00000470184.1_1_7:100179334-100179876:-|nuORF;ENSG00000077454|ENST00000310300|LRCH4	ENST00000470184.1_1_7:100179334-100179876:-|nuORF	ENST00000470184.1_1_7:100179334-100179876:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.82672119140625	2	461.826038	921.637523	0.023087	1.0662E-05	1.0203	0.0004712	1.0434	0.00048186	461.8265064158634	68.017	0.80929	68.017	67.757	68.566	0					58	29	3	0	0	0	0.20518	1	17155	17155		42.095	0	1	779550			25217	1089	14375	14376	31585	31585					0.17357005967278383
LPLRVLIV	8	Unmodified	_LPLRVLIV_					0	0	0		ENST00000470184.1_1_7:100179334-100179876:-|nuORF;ENSG00000077454|ENST00000310300|LRCH4	ENST00000470184.1_1_7:100179334-100179876:-|nuORF	ENST00000470184.1_1_7:100179334-100179876:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.82598876953125	2	461.826038	921.637523	0.053064	2.4507E-05	0.33977	0.00015692	0.39284	0.00018142	461.8260683786065	66.723	0.75632	66.807	66.518	67.274	0.083824					66	26	4	0	0	0	0.20518	1	16703	16703		42.095	0	1	1062300			25218	1089	14375	14376	31586	31586					0.17357005967278383
LPLRVLIV	8	Unmodified	_LPLRVLIV_					0	0	0		ENST00000470184.1_1_7:100179334-100179876:-|nuORF;ENSG00000077454|ENST00000310300|LRCH4	ENST00000470184.1_1_7:100179334-100179876:-|nuORF	ENST00000470184.1_1_7:100179334-100179876:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.8260498046875	2	461.826038	921.637523	0.021382	9.8749E-06	0.32334	0.00014933	0.34472	0.0001592	461.8260828883356	66.842	0.82437	66.829	66.572	67.396	-0.013588					61	28	3	0	0	0	0.15515	2	16777	16728;16777		50.855	0	1	1013300			25219	1089	14375	14376	31587;31588	31588					0.17357005967278383
LPLRVPLL	8	Unmodified	_LPLRVPLL_					0	0	0			REV__ENST00000292591.11_1_5:179228908-179233794:-|nuORF	REV__ENST00000292591.11_1_5:179228908-179233794:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.8182678222656	2	460.818213	919.621873	-0.044585	-2.0545E-05	0.37054	0.00017075	0.32596	0.00015021	460.8182999182508	69.17	1.1265	69.17	68.872	69.999	0					63	40	2	0	0	0	0.12267	1	17446	17446		56.541	0	1	1073200	+		25220	19763	14376	14377	31589	31589					0.15884719450230023
LPLRVPLL	8	Unmodified	_LPLRVPLL_					0	0	0			REV__ENST00000292591.11_1_5:179228908-179233794:-|nuORF	REV__ENST00000292591.11_1_5:179228908-179233794:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.81829833984375	2	460.818213	919.621873	0.1077	4.9628E-05	0.20106	9.2651E-05	0.30875	0.00014228	460.8182405634223	69.171	1.2267	69.243	68.854	70.081	0.071938					64	43	2	0	0	0	0.082568	1	17466	17466		63.563	0	1	1135000	+		25221	19763	14376	14377	31590	31590					0.15884719450230023
LPLRVQKIR	9	Unmodified	_LPLRVQKIR_					0	0	0		ENSG00000137996|ENST00000370128|RTCA;nc|ENSG00000137996|O00442-2|RTCA;ENST00000483474.1_1_1:100731850-100732734:+|nuORF;ENST00000498617.5_1_1:100731850-100733645:+|nuORF	ENSG00000137996|ENST00000370128|RTCA	ENSG00000137996|ENST00000370128|RTCA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7584838867188	2	561.877125	1121.7397	0.083472	4.6901E-05	-0.098967	-5.5607E-05	-0.015495	-8.7064E-06	561.876836298892	31.352	0.41736	31.394	31.183	31.6	0.042364					32	14	3	0	0	0	0.25622	1	5835	5835		7.2892	0.56607	1	234780			25222	4103	14377	14378	31591	31591					0.1836967203887525
LPLSARLKG	9	Unmodified	_LPLSARLKG_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.25665283203125	2	477.808377	953.6022	-0.15799	-7.5489E-05	-0.066525	-3.1786E-05	-0.22451	-0.00010728	477.80831973091557	27.871	0.68853	27.871	27.589	28.277	0					38	23	2	0	0	0	0.24848	1	4772	4772		13.906	13.906	1	183360	+		25223	16918	14378	14379	31592	31592					0.12354343439471904
LPLSARLKG	9	Unmodified	_LPLSARLKG_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.80841064453125	2	477.808377	953.6022	-0.095706	-4.5729E-05	0.034849	1.6651E-05	-0.060858	-2.9078E-05	477.80826047204124	27.845	0.59047	27.827	27.562	28.153	-0.018143					31	20	2	0	0	0	0.23007	1	4745	4745		19.257	2.3147	1	161150	+		25224	16918	14378	14379	31593	31593					0.12354343439471904
LPLSARLKG	9	Unmodified	_LPLSARLKG_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.256103515625	2	477.808377	953.6022	-0.15698	-7.5008E-05	-0.013408	-6.4065E-06	-0.17039	-8.1415E-05	477.80829993674087	27.749	0.62072	27.737	27.555	28.176	-0.01156					34	21	2	0	0	0	0.25431	1	4753	4753		9.3831	2.0939	1	253580	+		25225	16918	14378	14379	31594	31594					0.12354343439471904
LPLSARLKG	9	Unmodified	_LPLSARLKG_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	477.808377	953.6022	-0.095706	-4.5729E-05	0.034849	1.6651E-05	-0.060858	-2.9078E-05	477.80826047204124	27.845	0.59047	27.827	27.562	28.153	-0.018143	0.014952	4.472E-05	NaN	19.257	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161150	+		25226	16918	14378	14379							0.12354343439471904
LPLSGRGGLL	10	Unmodified	_LPLSGRGGLL_					0	0	0			REV__ENST00000529941.1_1_11:124767484-124767703:-|nuORF	REV__ENST00000529941.1_1_11:124767484-124767703:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2978210449219	2	491.805834	981.597115	0.6332	0.00031141	-0.37844	-0.00018612	0.25476	0.00012529	491.8055531726279	52.954	1.4694	53.01	52.558	54.028	0.056255					127	54	4	0	0	0	0.18128	1	12704	12704		34.932	0.53034	1	7436600	+		25227	16646	14379	14380	31595	31595					0.10558039576847023
LPLSGRRIPPL	11	Unmodified	_LPLSGRRIPPL_					0	0	0		ENSG00000198162|ENST00000356554|MAN1A2;ENST00000482811.1_1_1:117910805-117957398:+|nuORF	ENSG00000198162|ENST00000356554|MAN1A2	ENSG00000198162|ENST00000356554|MAN1A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5259704589844	3	406.927552	1217.76083	-0.14865	-6.0489E-05	0.26785	0.00010899	0.1192	4.8506E-05	406.92755183074865	53.706	0.52129	53.762	53.56	54.081	0.056255					38	19	3	0	0	0	0.33085	1	12670	12670		5.5233	0.32485	1	469420			25228	8043	14380	14381	31596	31596					0.16065637347742268
LPLSGRRIPPL	11	Unmodified	_LPLSGRRIPPL_					0	0	0		ENSG00000198162|ENST00000356554|MAN1A2;ENST00000482811.1_1_1:117910805-117957398:+|nuORF	ENSG00000198162|ENST00000356554|MAN1A2	ENSG00000198162|ENST00000356554|MAN1A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5258483886719	3	406.927552	1217.76083	0.095772	3.8972E-05	-0.37163	-0.00015123	-0.27586	-0.00011225	406.9273722029679	53.794	0.53433	53.784	53.585	54.119	-0.0096054					43	19	3	0	0	0	0.32563	1	12747	12747		12.856	0.50561	1	373520			25229	8043	14380	14381	31597	31597					0.16065637347742268
LPLSHPLTV	9	Unmodified	_LPLSHPLTV_					0	0	0			REV__ENST00000504524.5_1_3:129275157-129277480:-|nuORF	REV__ENST00000504524.5_1_3:129275157-129277480:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.26416015625	2	488.794935	975.575317	0.37644	0.000184	-3.3106	-0.0016182	-2.9342	-0.0014342	488.7951204391611	52.48	0.34464	52.531	52.337	52.682	0.050575					14	12	2	0	0	0	0.10135	1	12304	12304		43.858	0	1	196100	+		25230	21732	14381	14382	31598	31598					0.0865523482827939
LPLSQFTTV	9	Unmodified	_LPLSQFTTV_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.80108642578125	2	503.2844	1004.55425	0.36369	0.00018304	-0.44833	-0.00022564	-0.084644	-4.26E-05	503.2840825082449	63.199	0.43148	63.199	63.011	63.443	0					28	15	2	0	0	0	0.20167	1	15583	15583		29.082	14.243	1	371780			25231	4431	14382	14383	31599	31599					0.05215224728760859
LPLSQFTTV	9	Unmodified	_LPLSQFTTV_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	503.2844	1004.55425	0.35675	0.00017955	-0.1871	-9.4164E-05	0.16965	8.5383E-05	503.28423317942105	63.191	0.4843	63.183	62.994	63.478	-0.0085526	-0.0078076	0.00014798	NaN	29.082	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463020			25232	4431	14382	14383							0.05215224728760859
LPLSRIRVI	9	Unmodified	_LPLSRIRVI_					0	0	0		ENSG00000104472|ENST00000220913|CHRAC1	ENSG00000104472|ENST00000220913|CHRAC1	ENSG00000104472|ENST00000220913|CHRAC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.798828125	2	533.858401	1065.70225	0.30733	0.00016407	0.88612	0.00047306	1.1934	0.00063713	533.8590052674846	49.226	0.49935	49.271	49.016	49.515	0.044891					38	17	3	0	0	0	0.20167	1	11295	11295		12.241	0	1	454950			25233	1895	14383	14384	31600	31600					0.17202580773277987
LPLSRIRVI	9	Unmodified	_LPLSRIRVI_					0	0	0		ENSG00000104472|ENST00000220913|CHRAC1	ENSG00000104472|ENST00000220913|CHRAC1	ENSG00000104472|ENST00000220913|CHRAC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7991943359375	2	533.858401	1065.70225	0.31424	0.00016776	0.94892	0.00050659	1.2632	0.00067435	533.858989418695	49.182	0.51415	49.214	48.954	49.468	0.032047					39	17	3	0	0	0	0.20167	1	11310	11310		22.736	2.2827	1	590710			25234	1895	14383	14384	31601	31601					0.17202580773277987
LPLSRPVS	8	Unmodified	_LPLSRPVS_					0	0	0		ENST00000341307.6_1_11:63448974-63449103:+|nuORF	ENST00000341307.6_1_11:63448974-63449103:+|nuORF	ENST00000341307.6_1_11:63448974-63449103:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.77996826171875	2	434.766178	867.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.663	1	35.663	35.163	36.163	0								0	0	0	0.34957	1	7165	7165		14.838	0	1				25235	9522	14384	14385	31602	31602					0.07874392622716186
LPLSSGCRPF	10	Unmodified	_LPLSSGCRPF_					0	0	0		BAP1|p.N349Tfs*13|1|0.23|ENSG00000163930|chr3:52405180-52405180|T/-|frameshift_variant	BAP1|p.N349Tfs*13|1|0.23|ENSG00000163930|chr3:52405180-52405180|T/-|frameshift_variant	BAP1|p.N349Tfs*13|1|0.23|ENSG00000163930|chr3:52405180-52405180|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2955322265625	2	538.781502	1075.54845	0.66115	0.00035622	0.70077	0.00037756	1.3619	0.00073378	539.2832022561904	84.422	0.65708	84.499	84.274	84.931	0.077095					38	25	2	0	0	0	0.31165	1	22102	22102		15.847	1.2655	1	151350			25236	69	14385	14386	31603	31603					0.013698029454417338
LPLSTYTT	8	Unmodified	_LPLSTYTT_					0	0	0			REV__nc|ENSG00000161911|Q86YW5-3|TREML1	REV__nc|ENSG00000161911|Q86YW5-3|TREML1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.2592468261719	2	448.242201	894.469849	0.38966	0.00017466	-0.4225	-0.00018938	-0.03284	-1.472E-05	448.241921640336	76.525	0.89178	76.494	76.263	77.154	-0.031487					45	32	2	0	0	0	0.34046	1	19890	19890		14.582	9.8257	1	356550	+		25237	16955	14386	14387	31604	31604					0.018392739119917678
LPLSWNGYIEE	11	Unmodified	_LPLSWNGYIEE_					0	0	0			REV__ENSG00000170482|ENST00000348729|SLC23A1	REV__ENSG00000170482|ENST00000348729|SLC23A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.29998779296875	3	440.887199	1319.63977	0.22164	9.7717E-05	0.91136	0.00040181	1.133	0.00049952	440.8871212231204	28.979	0.081913	28.979	28.924	29.006	0					4	2	2	0	0	0	0.33277	1	5118	5118		3.0723	0	1	19579	+		25238	17582	14387	14388	31605	31605					-0.007266548762345337
LPLTASIWLG	10	Unmodified	_LPLTASIWLG_					0	0	0		ENST00000379999.6_1_10:5945009-5945054:+|nuORF	ENST00000379999.6_1_10:5945009-5945054:+|nuORF	ENST00000379999.6_1_10:5945009-5945054:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.7645874023438	2	535.815867	1069.61718	-0.95717	-0.00051287	-4.199	-0.0022499	-5.1561	-0.0027627	536.3141259919636	34.971	0.4223	35.046	34.788	35.21	0.075306					28	14	3	0	0	0	0.36786	1	6905	6905		9.3831	0.78985	1	134440			25239	9977	14388	14389	31606	31606					0.08515790516798916
LPLTASIWLG	10	Unmodified	_LPLTASIWLG_					0	0	0		ENST00000379999.6_1_10:5945009-5945054:+|nuORF	ENST00000379999.6_1_10:5945009-5945054:+|nuORF	ENST00000379999.6_1_10:5945009-5945054:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	535.815867	1069.61718	-0.6674	-0.0003576	-4.3153	-0.0023122	-4.9827	-0.0026698	535.8132220603082	35.101	0.30817	35.101	34.892	35.2	0	0.02749	-5.9572E-05	NaN	9.3831	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101010			25240	9977	14388	14389							0.08515790516798916
LPLTCPILLV	10	Unmodified	_LPLTCPILLV_					0	0	0		ENST00000421997.5_1_1:95145158-95285609:-|nuORF	ENST00000421997.5_1_1:95145158-95285609:-|nuORF	ENST00000421997.5_1_1:95145158-95285609:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7740478515625	2	541.338121	1080.66169	0.57851	0.00031317	-0.29424	-0.00015928	0.28427	0.00015388	541.3377481789488	86.425	1.9138	86.509	85.726	87.64	0.084251					54	35	2	0	0	0	0.3198	1	22659	22659		4.3292	0	1	218250			25241	10376	14389	14390	31607	31607					0.12458478338635359
LPLTHETKK	9	Unmodified	_LPLTHETKK_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7994384765625	2	533.816399	1065.61824	0.30719	0.00016399	0.13414	7.1607E-05	0.44134	0.00023559	533.8165681571165	49.428	0.4276	49.473	49.293	49.721	0.044891					24	15	2	0	0	0	0.22188	1	11345	11345		20.454	2.3073	1	276260			25242	6608	14390	14391	31608	31608					0.08806004885695984
LPLTHETKK	9	Unmodified	_LPLTHETKK_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.8001098632812	2	533.816399	1065.61824	0.35251	0.00018818	0.0041559	2.2185E-06	0.35667	0.0001904	533.816389929608	49.41	0.51744	49.442	49.24	49.758	0.032043					27	18	2	0	0	0	0.22188	1	11354	11354		20.454	0.039092	1	304760			25243	6608	14390	14391	31609	31609					0.08806004885695984
LPLTIFNTV	9	Unmodified	_LPLTIFNTV_					0	0	0		ENSG00000164128|ENST00000296533|NPY1R	ENSG00000164128|ENST00000296533|NPY1R	ENSG00000164128|ENST00000296533|NPY1R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3118896484375	2	509.302593	1016.59063	0.49441	0.00025181	-0.83505	-0.00042529	-0.34064	-0.00017349	509.80360640068517	84.162	0.57317	84.239	84.097	84.671	0.077095					44	22	3	0	0	0	0.12279	1	22065	22065		34.932	0.53034	1	188970			25244	5796	14391	14392	31610	31610					0.08300101625457046
LPLTIFNTV	9	Unmodified	_LPLTIFNTV_					0	0	0		ENSG00000164128|ENST00000296533|NPY1R	ENSG00000164128|ENST00000296533|NPY1R	ENSG00000164128|ENST00000296533|NPY1R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3119201660156	2	509.302593	1016.59063	0.47583	0.00024234	-0.52442	-0.00026709	-0.048596	-2.475E-05	509.8035434166801	84.318	1.1205	84.301	84.072	85.192	-0.016823					74	45	3	0	0	0	0.16685	1	22085	22085		28.495	0.86571	1	181580			25245	5796	14391	14392	31611	31611					0.08300101625457046
LPLTNNRG	8	Unmodified	_LPLTNNRG_					0	0	0		ENST00000478241.6_2_12:56228950-56229337:+|nuORF	ENST00000478241.6_2_12:56228950-56229337:+|nuORF	ENST00000478241.6_2_12:56228950-56229337:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7525329589844	2	442.751059	883.487565	-0.21682	-9.5996E-05	4.0831	0.0018078	3.8663	0.0017118	442.7526391168873	60.115	0.46172	60.115	59.897	60.359	0					21	16	2	0	0	0	0.32038	1	14668	14668		28.487	1.6032	1	609060			25246	10970	14392	14393	31612	31612					0.04116033957518539
LPLTNNRG	8	Unmodified	_LPLTNNRG_					0	0	0		ENST00000478241.6_2_12:56228950-56229337:+|nuORF	ENST00000478241.6_2_12:56228950-56229337:+|nuORF	ENST00000478241.6_2_12:56228950-56229337:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	442.751059	883.487565	-0.21682	-9.5996E-05	4.0831	0.0018078	3.8663	0.0017118	442.7526391168873	60.115	0.46172	60.115	59.897	60.359	0	0.017292	-2.6724E-05	NaN	28.487	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	609060			25247	10970	14392	14393							0.04116033957518539
LPLTNNRG	8	Unmodified	_LPLTNNRG_					0	0	0		ENST00000478241.6_2_12:56228950-56229337:+|nuORF	ENST00000478241.6_2_12:56228950-56229337:+|nuORF	ENST00000478241.6_2_12:56228950-56229337:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	442.751059	883.487565	-0.53208	-0.00023558	4.1442	0.0018349	3.6122	0.0015993	442.752584183684	59.985	0.51211	60.08	59.855	60.368	0.095093	-0.017292	2.7424E-05	NaN	28.487	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356920			25248	10970	14392	14393							0.04116033957518539
LPLVATIPPF	10	Unmodified	_LPLVATIPPF_					0	0	0			REV__ENST00000556692.1_1_14:68159543-68162507:-|nuORF	REV__ENST00000556692.1_1_14:68159543-68162507:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7716674804688	2	534.328611	1066.64267	0.35043	0.00018725	-2.725	-0.001456	-2.3746	-0.0012688	534.3265423138419	70.581	0.25322	70.642	70.546	70.8	0.060783					14	8	2	0	0	0	0.31267	1	17871	17871		10.074	1.9184	1	85216	+		25249	22261	14393	14394	31613	31613					0.11201265039221653
LPLVATIPPF	10	Unmodified	_LPLVATIPPF_					0	0	0			REV__ENST00000556692.1_1_14:68159543-68162507:-|nuORF	REV__ENST00000556692.1_1_14:68159543-68162507:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	534.328611	1066.64267	0.50911	0.00027203	-4.0404	-0.0021589	-3.5313	-0.0018869	534.3263472784398	70.669	0.33326	70.669	70.54	70.873	0	0.013452	-0.00022311	NaN	10.074	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84176	+		25250	22261	14393	14394							0.11201265039221653
LPLVGIWL	8	Unmodified	_LPLVGIWL_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.7897033691406	2	455.791664	909.568775	0.10966	4.9982E-05	-2.8967	-0.0013203	-2.787	-0.0012703	455.7895591574993	57.847	1.0044	57.847	57.495	58.5	0					86	35	4	0	0	0	0.28567	1	14068	14068		32.454	0	1	845560			25251	3107	14394	14395	31614	31614					0.11037341667554301
LPLVGLLLF	9	Unmodified	_LPLVGLLLF_					0	0	0		ENSG00000134827|ENST00000257264|TCN1	ENSG00000134827|ENST00000257264|TCN1	ENSG00000134827|ENST00000257264|TCN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8174743652344	2	492.828246	983.64194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.725	1	64.716	64.216	65.216	-0.0095291								0	0	0	0.20509	1	16094	16094		20.871	0	1				25252	3817	14395	14396	31615	31615					0.1494647039017991
LPLVLVNSI	9	Unmodified	_LPLVLVNSI_					0	0	0			REV__ENST00000328345.7_2_6:99284709-99285063:+|nuORF	REV__ENST00000328345.7_2_6:99284709-99285063:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.3128662109375	2	484.312961	966.611368	0.39039	0.00018907	-0.20359	-9.8603E-05	0.18679	9.0466E-05	484.3128439054577	79.115	1.597	79.115	78.749	80.346	0					189	62	5	0	0	0	0.0033114	1	20686	20686		99.799	10.845	1	5859800	+		25253	20015	14396	14397	31616	31616					0.12672692005139652
LPLVLVNSI	9	Unmodified	_LPLVLVNSI_					0	0	0			REV__ENST00000328345.7_2_6:99284709-99285063:+|nuORF	REV__ENST00000328345.7_2_6:99284709-99285063:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.31298828125	2	484.312961	966.611368	0.38035	0.00018421	-0.19879	-9.6277E-05	0.18156	8.7933E-05	484.31284301351	79.061	1.6273	79.123	78.79	80.417	0.061417					190	66	5	0	0	0	0.0018995	3	20591	20591;20640;20690		111.29	16.141	1	5960500	+		25254	20015	14396	14397	31617;31618;31619	31617					0.12672692005139652
LPLVNGQK	8	Unmodified	_LPLVNGQK_					0	0	0			REV__ENST00000467302.5_1_1:109235213-109236214:+|nuORF	REV__ENST00000467302.5_1_1:109235213-109236214:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7796630859375	2	434.766178	867.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.477	1	35.477	34.977	35.977	0								0	0	0	0.34229	1	7108	7108		18.135	4.6271	1		+		25255	15656	14397	14398	31620	31620					0.07874392622716186
LPLVNGQK	8	Unmodified	_LPLVNGQK_					0	0	0			REV__ENST00000467302.5_1_1:109235213-109236214:+|nuORF	REV__ENST00000467302.5_1_1:109235213-109236214:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.779541015625	2	434.766178	867.517802	-1.1098	-0.00048249	1.7901	0.00077826	0.6803	0.00029577	434.7670661010257	34.924	0.87716	34.999	34.576	35.454	0.075306					45	31	2	0	0	0	0.42758	1	7036	7036		13.508	0	1	173490	+		25256	15656	14397	14398	31621	31621					0.07874392622716186
LPLVQNLQR	9	Unmodified	_LPLVQNLQR_					0	0	0			REV__ENST00000467530.5_1_1:85960282-85960465:-|nuORF	REV__ENST00000467530.5_1_1:85960282-85960465:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3163452148438	2	540.82984	1079.64513	0.52221	0.00028243	1.9305	0.0010441	2.4527	0.0013265	540.8307073003189	75.095	0.11108	75.148	75.076	75.187	0.052361					5	3	2	0	0	0	0.24311	1	19278	19278		11.64	0	1	147870	+		25257	21300	14398	14399	31622	31622					0.10849113496897189
LPLVQSEQFVL	11	Unmodified	_LPLVQSEQFVL_					0	0	0			REV__nc|ENSG00000115966|P15336-7|ATF2	REV__nc|ENSG00000115966|P15336-7|ATF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.9140625	3	424.911456	1271.71254	-0.041165	-1.7492E-05	-1.7012	-0.00072286	-1.7424	-0.00074035	424.91132014552875	32.708	3.1994	32.762	32.167	35.367	0.054371					372	115	6	0	0	0	0.36161	1	6158	6158		16.275	0	1	38533000	+		25258	22963	14399	14400	31623	31623					0.08755098917163195
LPLVVLGVTF	10	Unmodified	_LPLVVLGVTF_					0	0	0		ENSG00000171049|ENST00000340023|FPR2	ENSG00000171049|ENST00000340023|FPR2	ENSG00000171049|ENST00000340023|FPR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3548583984375	2	529.336436	1056.65832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.668	1	77.668	77.168	78.168	0								0	0	0	0.35948	1	20058	20058		10.824	0	1				25259	6505	14400	14401	31624	31624					0.13225551556274695
LPLWCYHSIF	10	Unmodified	_LPLWCYHSIF_					0	0	0		nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-7|DOCK7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.30267333984375	3	426.882843	1277.6267	0.014516	6.1965E-06	-0.24742	-0.00010562	-0.2329	-9.9421E-05	426.88262284435217	63.262	0.58384	63.357	63.066	63.65	0.095722					34	20	2	0	0	0	0.31746	1	15719	15719		6.1918	0	1	250660			25260	12665	14401	14402	31625	31625					-0.0010076446933453553
LPLYNVDLMP	10	Unmodified	_LPLYNVDLMP_					0	0	0			REV__ENSG00000145087|ENST00000471454|STXBP5L	REV__ENSG00000145087|ENST00000471454|STXBP5L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.36376953125	2	587.812467	1173.61038	0.55748	0.00032769	3.3319	0.0019585	3.8894	0.0022862	587.8154212318772	21.15	0.28633	21.04	20.864	21.15	-0.11003					11	9	2	0	0	0	0.31926	1	2728	2728		5.7319	1.4026	1	52666	+		25261	16276	14402	14403	31626	31626					0.030521095739004522
LPMAPKGTRRR	11	Unmodified	_LPMAPKGTRRR_					0	0	0			REV__ENST00000471948.5_1_2:263813-263963:-|nuORF	REV__ENST00000471948.5_1_2:263813-263963:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.88232421875	2	641.879873	1281.74519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.798	1	92.888	92.388	93.388	0.089195								0	0	0	0.38071	1	24693	24693		1.4819	0.15237	1		+		25262	21360	14403	14404	31627	31627					0.11559027559064816
LPMESDCDPG	10	Unmodified	_LPMESDCDPG_					0	0	0		nc|ENSG00000185019|O94941-2|UBOX5;ENSG00000185019|ENST00000217173|UBOX5	nc|ENSG00000185019|O94941-2|UBOX5	nc|ENSG00000185019|O94941-2|UBOX5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3187255859375	2	532.207175	1062.3998	0.60906	0.00032415	1.6378	0.00087167	2.2469	0.0011958	532.2083353278931	75.472	0.21601	75.44	75.342	75.558	-0.031487					9	7	2	0	0	0	0.32009	1	19369	19369		3.9444	1.3669	1	59182			25263	7498	14404	14405	31628	31628					-0.12890715810431175
LPMLKVLNL	9	Oxidation (M)	_LPM(Oxidation (M))LKVLNL_		LPM(1)LKVLNL		LPM(61)LKVLNL	0	0	1		ENSG00000164342|ENST00000296795|TLR3;chr4:186082550-186082743|473|10.7|0.4|4.75|+|ENST00000513189|TLR3,TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8281860351562	2	528.827921	1055.64129	0.50203	0.00026549	0.023891	1.2634E-05	0.52592	0.00027812	528.8277780840303	67.606	0.88708	67.606	67.135	68.022	0					53	30	2	0	0	0	0.027237	1	17071	17071		61.357	30.721	1	275330			25264	5836	14405	14406	31629	31629		690			0.11569307678792029
LPMLKVLNL	9	Oxidation (M)	_LPM(Oxidation (M))LKVLNL_		LPM(1)LKVLNL		LPM(71)LKVLNL	0	0	1		ENSG00000164342|ENST00000296795|TLR3;chr4:186082550-186082743|473|10.7|0.4|4.75|+|ENST00000513189|TLR3,TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8280639648438	2	528.827921	1055.64129	0.51591	0.00027283	0.038218	2.0211E-05	0.55413	0.00029304	528.8277165820178	67.564	0.90104	67.642	67.183	68.084	0.078041					49	31	2	0	0	0	0.015402	1	17034	17034		71.134	40.497	1	299050			25265	5836	14405	14406	31630	31630		690			0.11569307678792029
LPMLKVLNL	9	Oxidation (M)	_LPM(Oxidation (M))LKVLNL_					0	0	1		ENSG00000164342|ENST00000296795|TLR3;chr4:186082550-186082743|473|10.7|0.4|4.75|+|ENST00000513189|TLR3,TLR3	ENSG00000164342|ENST00000296795|TLR3	ENSG00000164342|ENST00000296795|TLR3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.827921	1055.64129	0.41596	0.00021997	0.41508	0.00021951	0.83104	0.00043948	528.8278527460541	67.604	0.69893	67.588	67.292	67.991	-0.016296	-0.023888	0.00030539	NaN	71.134	43	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285160			25266	5836	14405	14406				690			0.11569307678792029
LPNAQIMLI	9	Unmodified	_LPNAQIMLI_					0	0	0		ENST00000378588.4_1_X:37670194-37670278:+|nuORF	ENST00000378588.4_1_X:37670194-37670278:+|nuORF	ENST00000378588.4_1_X:37670194-37670278:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7967529296875	2	506.79662	1011.57869	0.47659	0.00024153	-0.65908	-0.00033402	-0.18249	-9.2483E-05	506.79621880647875	44.399	0.37738	44.468	44.249	44.627	0.068573					24	13	2	0	0	0	0.12846	1	9860	9860		34.102	12.356	1	410330			25267	9960	14406	14407	31631	31631					0.07336161610624004
LPNAQIMLI	9	Unmodified	_LPNAQIMLI_					0	0	0		ENST00000378588.4_1_X:37670194-37670278:+|nuORF	ENST00000378588.4_1_X:37670194-37670278:+|nuORF	ENST00000378588.4_1_X:37670194-37670278:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.79662	1011.57869	0.36777	0.00018638	-0.82784	-0.00041955	-0.46007	-0.00023316	506.79621904464426	44.394	0.43942	44.469	44.229	44.669	0.075047	0.00065644	-0.00010687	NaN	34.102	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308500			25268	9960	14406	14407							0.07336161610624004
LPNARNAAK	9	Unmodified	_LPNARNAAK_					0	0	0		ENST00000406466.2_1_7:94463564-94463681:+|nuORF	ENST00000406466.2_1_7:94463564-94463681:+|nuORF	ENST00000406466.2_1_7:94463564-94463681:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.7779235839844	2	477.777608	953.540663	0.4231	0.00020215	0.08122	3.8805E-05	0.50432	0.00024095	477.7776057274182	20.368	2.0644	20.258	19.29	21.355	-0.11003					187	72	4	0	0	0	0.31038	1	2328	2328		7.2892	0.56607	1	5172900			25269	10224	14407	14408	31632	31632					0.0620341174017085
LPNAVITRI	9	Unmodified	_LPNAVITRI_					0	0	0		ENST00000479871.1_1_9:116172333-116172573:-|nuORF;ENSG00000148229|ENST00000374171|POLE3	ENST00000479871.1_1_9:116172333-116172573:-|nuORF	ENST00000479871.1_1_9:116172333-116172573:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.8140563964844	2	498.813659	995.612765	0.69788	0.00034811	0.038754	1.9331E-05	0.73663	0.00036744	498.8135678635395	51.003	1.3778	51.003	50.241	51.619	0					141	50	5	0	0	0	0.027957	2	11835	11835;11932		61.09	11.536	1	6293800			25270	4797	14408	14409	31633;31634	31633					0.114783260938907
LPNAVITRI	9	Unmodified	_LPNAVITRI_					0	0	0		ENST00000479871.1_1_9:116172333-116172573:-|nuORF;ENSG00000148229|ENST00000374171|POLE3	ENST00000479871.1_1_9:116172333-116172573:-|nuORF	ENST00000479871.1_1_9:116172333-116172573:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8138732910156	2	498.813659	995.612765	0.57388	0.00028626	0.10235	5.1056E-05	0.67623	0.00033731	498.81362047237025	50.968	1.3794	51.015	50.405	51.784	0.046574					145	50	4	0	0	0	0.08842	1	11871	11871		46.022	18.394	1	6824700			25271	4797	14408	14409	31635	31635					0.114783260938907
LPNAVITRI	9	Unmodified	_LPNAVITRI_					0	0	0		ENST00000479871.1_1_9:116172333-116172573:-|nuORF;ENSG00000148229|ENST00000374171|POLE3	ENST00000479871.1_1_9:116172333-116172573:-|nuORF	ENST00000479871.1_1_9:116172333-116172573:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.8141174316406	2	498.813659	995.612765	0.62687	0.00031269	0.14999	7.4816E-05	0.77686	0.00038751	498.8136199693692	50.994	1.4762	51.004	50.298	51.774	0.0095673					147	55	4	0	0	0	0.018042	1	11844	11844		67.081	25.125	1	7413700			25272	4797	14408	14409	31636	31636					0.114783260938907
LPNDVVLQI	9	Unmodified	_LPNDVVLQI_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7976989746094	2	505.797675	1009.5808	0.39694	0.00020077	-1.7582	-0.00088929	-1.3613	-0.00068852	505.7973501392296	72.659	2.0202	72.659	71.718	73.738	0					101	73	2	0	0	0	0.14786	1	18588	18588		31.268	5.0002	1	501890			25273	3885	14409	14410	31637	31637					0.07638913620110088
LPNDVVLQI	9	Unmodified	_LPNDVVLQI_					0	0	0		nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	nc|ENSG00000135597|Q96D71-2|REPS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7973327636719	2	505.797675	1009.5808	0.37803	0.00019121	-1.8348	-0.00092804	-1.4568	-0.00073683	505.79728831895204	72.614	2.0456	72.668	71.703	73.749	0.053833					97	74	2	0	0	0	0.19083	1	18566	18566		24.991	0.97039	1	541730			25274	3885	14409	14410	31638	31638					0.07638913620110088
LPNEGKLNLPM	11	Unmodified	_LPNEGKLNLPM_					0	0	0			REV__SETDB2|p.L334Hfs*37|1|0.05|ENSG00000136169|chr13:49480313-49480314|-/ATTTAGAA|frameshift_variant	REV__SETDB2|p.L334Hfs*37|1|0.05|ENSG00000136169|chr13:49480313-49480314|-/ATTTAGAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9011535644531	3	409.225158	1224.65364	-0.070283	-2.8761E-05	-1.7806	-0.00072865	-1.8508	-0.00075741	409.224630069698	42.647	0.83955	42.732	42.323	43.163	0.085197					48	30	2	0	0	0	0.31312	1	9353	9353		6.2344	0	1	536930	+		25275	15795	14410	14411	31639	31639					0.0503029935118775
LPNENKTKKT	10	Unmodified	_LPNENKTKKT_					0	0	0			REV__ENST00000463223.1_1_9:115247655-115248798:-|nuORF	REV__ENST00000463223.1_1_9:115247655-115248798:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8340454101562	2	586.83532	1171.65609	0.52424	0.00030764	-1.1246	-0.00065996	-0.60038	-0.00035232	586.8341846329681	84.569	0.49086	84.65	84.422	84.912	0.080887					22	18	2	0	0	0	0.39935	1	22212	22212		3.5965	1.2938	1	202160	+		25276	21246	14411	14412	31640	31640					0.07712471080526484
LPNHRVLIM	9	Oxidation (M)	_LPNHRVLIM(Oxidation (M))_		LPNHRVLIM(1)		LPNHRVLIM(82)	0	0	1		ENST00000461108.5_1_3:52003444-52003858:-|nuORF;nc|ENSG00000114779|Q96IU4-2|ABHD14B;ENST00000487005.1_1_3:52003444-52008077:-|nuORF;ENSG00000114779|ENST00000361143|ABHD14B	ENST00000461108.5_1_3:52003444-52003858:-|nuORF	ENST00000461108.5_1_3:52003444-52003858:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.8187866210938	2	554.818418	1107.62228	0.21704	0.00012042	-0.382	-0.00021194	-0.16496	-9.1523E-05	554.8184531138776	31.019	0.58197	31.019	30.727	31.309	0					49	20	3	0	0	0	0.0085732	1	5718	5718		81.613	49.496	1	542950			25277	10743	14412	14413	31641	31641		948			0.072777711077606
LPNHRVLIM	9	Oxidation (M)	_LPNHRVLIM(Oxidation (M))_		LPNHRVLIM(1)		LPNHRVLIM(100)	0	0	1		ENST00000461108.5_1_3:52003444-52003858:-|nuORF;nc|ENSG00000114779|Q96IU4-2|ABHD14B;ENST00000487005.1_1_3:52003444-52008077:-|nuORF;ENSG00000114779|ENST00000361143|ABHD14B	ENST00000461108.5_1_3:52003444-52003858:-|nuORF	ENST00000461108.5_1_3:52003444-52003858:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.818603515625	2	554.818418	1107.62228	0.15183	8.424E-05	-0.22039	-0.00012228	-0.068556	-3.8036E-05	554.8184961110201	30.988	0.53236	31.016	30.721	31.253	0.027946					50	18	4	0	0	0	0.00268	2	5704	5704;5751		104.8	70.612	1	637550			25278	10743	14412	14413	31642;31643	31642		948			0.072777711077606
LPNHRVLIM	9	Oxidation (M)	_LPNHRVLIM(Oxidation (M))_		LPNHRVLIM(1)		LPNHRVLIM(89)	0	0	1		ENST00000461108.5_1_3:52003444-52003858:-|nuORF;nc|ENSG00000114779|Q96IU4-2|ABHD14B;ENST00000487005.1_1_3:52003444-52008077:-|nuORF;ENSG00000114779|ENST00000361143|ABHD14B	ENST00000461108.5_1_3:52003444-52003858:-|nuORF	ENST00000461108.5_1_3:52003444-52003858:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.818115234375	2	554.818418	1107.62228	0.14824	8.2247E-05	0.022297	1.2371E-05	0.17054	9.4618E-05	554.8185477182176	30.945	0.53392	30.972	30.733	31.267	0.027157					47	19	3	0	0	0	0.0046874	1	5691	5691		88.904	60.417	1	571350			25279	10743	14412	14413	31644	31644		948			0.072777711077606
LPNIPVQTI	9	Unmodified	_LPNIPVQTI_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3343505859375	2	497.800217	993.585882	0.38067	0.0001895	1.0444	0.00051988	1.425	0.00070938	497.80049570894624	68.142	0.73151	68.142	67.809	68.541	0					49	26	3	0	0	0	0.11397	1	17165	17165		49.933	17.147	1	1066400			25280	976	14413	14414	31645	31645					0.08883217482730288
LPNIPVQTI	9	Unmodified	_LPNIPVQTI_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.33453369140625	2	497.800217	993.585882	0.39859	0.00019842	1.1624	0.00057865	1.561	0.00077707	497.8005137633666	68.075	0.70439	68.153	67.864	68.569	0.078041					44	25	3	0	0	0	0.15943	1	17115	17115		39.95	9.7249	1	1098800			25281	976	14413	14414	31646	31646					0.08883217482730288
LPNIPVQTI	9	Unmodified	_LPNIPVQTI_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.33441162109375	2	497.800217	993.585882	0.39999	0.00019911	0.88505	0.00044058	1.285	0.00063969	497.80055518611124	68.144	0.62255	68.125	67.836	68.458	-0.01915					50	21	4	0	0	0	0.13643	1	17175	17175		38.176	7.539	1	1111900			25282	976	14413	14414	31647	31647					0.08883217482730288
LPNIQAVL	8	Unmodified	_LPNIQAVL_					0	0	0		ENST00000479986.1_1_6:27858584-27860837:-|nuORF;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000188486|ENST00000530167|H2AX;ENSG00000164508|ENST00000297012|H2AC1;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000184270|ENST00000331128|H2AC21;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;nc|ENSG00000246705|Q9BTM1-2|H2AJ;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000184260|ENST00000331380|H2AC20	ENST00000479986.1_1_6:27858584-27860837:-|nuORF	ENST00000479986.1_1_6:27858584-27860837:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.2686462402344	2	434.268553	866.522553	0.4328	0.00018795	-0.32385	-0.00014064	0.10896	4.7316E-05	434.26830740783396	56.179	0.88324	56.179	55.992	56.876	0					61	32	3	0	0	0	0.33916	1	13581	13581		26.341	1.6674	1	1524100			25283	5850	14414	14415	31648	31648					0.08395276765452309
LPNKNRDEL	9	Unmodified	_LPNKNRDEL_					0	0	0		ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7987060546875	2	549.798737	1097.58292	0.28583	0.00015715	-0.03422	-1.8814E-05	0.25161	0.00013833	549.7986135326986	19.701	0.4984	19.701	19.461	19.96	0					44	17	4	0	0	0	0.26278	1	2300	2300		14.405	7.3037	1	142820			25284	10757;12577	14415	14416	31649	31649					0.03803342357900874
LPNKNRDEL	9	Unmodified	_LPNKNRDEL_					0	0	0		ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.798828125	2	549.798737	1097.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.854	1	19.738	19.238	20.238	-0.11592								0	0	0	0.11882	1	2362	2362		41.956	18.166	1				25285	10757;12577	14415	14416	31650	31650					0.03803342357900874
LPNKNRDEL	9	Unmodified	_LPNKNRDEL_					0	0	0		ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7988891601562	2	549.798737	1097.58292	0.55941	0.00030756	-0.074305	-4.0853E-05	0.4851	0.00026671	549.7986029048253	19.777	0.60517	19.721	19.485	20.09	-0.055691					46	21	3	0	0	0	0.22935	1	2322	2322		19.362	6.3195	1	208910			25286	10757;12577	14415	14416	31651	31651					0.03803342357900874
LPNKQRTVVTV	11	Unmodified	_LPNKQRTVVTV_					0	0	0		ENSG00000078061|ENST00000377045|ARAF;nc|ENSG00000078061|P10398-2|ARAF	ENSG00000078061|ENST00000377045|ARAF	ENSG00000078061|ENST00000377045|ARAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.9224853515625	3	418.922467	1253.74557	-0.088894	-3.724E-05	0.57417	0.00024053	0.48528	0.00020329	418.92267542982694	28.74	0.53934	28.74	28.522	29.062	0					32	18	2	0	0	0	0.38765	1	5058	5058		12.856	5.3789	1	220700			25287	1102	14416	14417	31652	31652					0.1288472575988635
LPNKQRTVVTV	11	Unmodified	_LPNKQRTVVTV_					0	0	0		ENSG00000078061|ENST00000377045|ARAF;nc|ENSG00000078061|P10398-2|ARAF	ENSG00000078061|ENST00000377045|ARAF	ENSG00000078061|ENST00000377045|ARAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.9225769042969	3	418.922467	1253.74557	0.019155	8.0244E-06	0.37315	0.00015632	0.39231	0.00016435	418.9226119116384	28.611	0.51983	28.606	28.438	28.957	-0.0042572					38	17	3	0	0	0	0.39698	1	5036	5036		11.631	2.8796	1	139820			25288	1102	14416	14417	31653	31653					0.1288472575988635
LPNKQRTVVTV	11	Unmodified	_LPNKQRTVVTV_					0	0	0		ENSG00000078061|ENST00000377045|ARAF;nc|ENSG00000078061|P10398-2|ARAF	ENSG00000078061|ENST00000377045|ARAF	ENSG00000078061|ENST00000377045|ARAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.922607421875	3	418.922467	1253.74557	-0.09363	-3.9224E-05	0.70231	0.00029422	0.60868	0.00025499	418.9226802409562	28.677	0.50482	28.677	28.466	28.971	0.0004673					39	17	3	0	0	0	0.39698	1	5036	5036		11.631	2.8796	1	256600			25289	1102	14416	14417	31654	31654					0.1288472575988635
LPNKSLWK	8	Unmodified	_LPNKSLWK_					0	0	0		ENSG00000146281|ENST00000275072|PM20D2	ENSG00000146281|ENST00000275072|PM20D2	ENSG00000146281|ENST00000275072|PM20D2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.78741455078125	2	493.295102	984.575651	0.53742	0.00026511	3.1529	0.0015553	3.6903	0.0018204	493.2969667709802	55.737	0.33804	55.737	55.482	55.82	0					16	11	2	0	0	0	0.32886	1	13299	13299		21.747	11.673	1	149550			25290	4705	14417	14418	31655	31655					0.08274654548131366
LPNLQTVTV	9	Unmodified	_LPNLQTVTV_					0	0	0		nc|ENSG00000172845|Q02447-6|SP3;ENSG00000172845|ENST00000310015|SP3;nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-2|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3	nc|ENSG00000172845|Q02447-6|SP3	nc|ENSG00000172845|Q02447-6|SP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.7900390625	2	492.78985	983.565146	0.59122	0.00029135	0.032292	1.5913E-05	0.62352	0.00030726	492.78971262662134	64.071	1.4424	64.071	63.364	64.807	0					206	52	5	0	0	0	0.00045155	4	15863	15819;15863;15905;15954		129.77	51.044	1	6496700			25291	6667	14418	14419	31656;31657;31658;31659	31657					0.07270627103059724
LPNLQTVTV	9	Unmodified	_LPNLQTVTV_					0	0	0		nc|ENSG00000172845|Q02447-6|SP3;ENSG00000172845|ENST00000310015|SP3;nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-2|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3	nc|ENSG00000172845|Q02447-6|SP3	nc|ENSG00000172845|Q02447-6|SP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.78997802734375	2	492.78985	983.565146	0.52003	0.00025627	0.052534	2.5888E-05	0.57256	0.00028215	492.7897314234297	63.942	1.3838	64.035	63.362	64.746	0.092876					196	49	5	0	0	0	0.00045155	5	15866	15725;15771;15816;15866;15916		129.77	51.044	1	6727600			25292	6667	14418	14419	31660;31661;31662;31663;31664	31663					0.07270627103059724
LPNLQTVTV	9	Unmodified	_LPNLQTVTV_					0	0	0		nc|ENSG00000172845|Q02447-6|SP3;ENSG00000172845|ENST00000310015|SP3;nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-2|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3	nc|ENSG00000172845|Q02447-6|SP3	nc|ENSG00000172845|Q02447-6|SP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.7899475097656	2	492.78985	983.565146	0.56469	0.00027828	-0.03436	-1.6932E-05	0.53033	0.00026134	492.78969590335055	64.041	1.4034	64.032	63.378	64.781	-0.0095291					181	50	5	0	0	0	0.0013683	5	15904	15753;15803;15854;15904;15953		118.07	39.34	1	6490500			25293	6667	14418	14419	31665;31666;31667;31668;31669	31668					0.07270627103059724
LPNLRILDL	9	Unmodified	_LPNLRILDL_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2378540039062	2	533.834591	1065.65463	0.71619	0.00038233	0.56118	0.00029958	1.2774	0.0006819	533.8347996075687	75.01	0.52566	75.01	74.765	75.291	0					33	18	2	0	0	0	0.17263	1	19228	19228		38.615	9.5332	1	347740			25294	7690	14419	14420	31670	31670					0.12442881782430959
LPNLRILDL	9	Unmodified	_LPNLRILDL_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2376708984375	2	533.834591	1065.65463	0.36029	0.00019234	1.0729	0.00057276	1.4332	0.00076509	533.8349585600168	74.965	0.59196	75.017	74.703	75.295	0.052361					42	21	3	0	0	0	0.1645	1	19253	19253		40.239	4.1122	1	385440			25295	7690	14419	14420	31671	31671					0.12442881782430959
LPNNRELYI	9	Unmodified	_LPNNRELYI_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78110025-78110175:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.3119506835938	2	566.31148	1130.60841	0.52327	0.00029633	0.10138	5.7415E-05	0.62465	0.00035375	566.3115816944913	47.927	1.0665	47.927	47.682	48.749	0					113	37	4	0	0	0	0.011693	2	10915	10915;10968		76.825	40.698	1	17096000			25296	4391	14420	14421	31672;31673	31672					0.04832816880320934
LPNNRELYI	9	Unmodified	_LPNNRELYI_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78110025-78110175:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.3121337890625	2	566.31148	1130.60841	0.77291	0.00043771	-0.097648	-5.5299E-05	0.67526	0.00038241	566.3114462196171	47.876	1.1534	47.924	47.565	48.718	0.047523					125	42	4	0	0	0	0.0073901	3	10935	10885;10935;10989		83.429	39.57	1	15743000			25297	4391	14420	14421	31674;31675;31676	31675					0.04832816880320934
LPNNRELYI	9	Unmodified	_LPNNRELYI_					0	0	0		ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78110025-78110175:-|nuORF	ENSG00000141543|ENST00000649764|EIF4A3	ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.31201171875	2	566.31148	1130.60841	0.47814	0.00027077	0.14006	7.9316E-05	0.61819	0.00035009	566.3115870106162	47.856	1.2007	47.899	47.611	48.812	0.04332					117	44	4	0	0	0	0.0054984	3	10905	10859;10905;10949		86.332	42.474	1	15496000			25298	4391	14420	14421	31677;31678;31679	31678					0.04832816880320934
LPNPRILL	8	Unmodified	_LPNPRILL_					0	0	0		ENST00000304677.2_1_14:21249334-21249412:+|nuORF	ENST00000304677.2_1_14:21249334-21249412:+|nuORF	ENST00000304677.2_1_14:21249334-21249412:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.305419921875	2	468.30547	934.596387	0.40418	0.00018928	-0.18699	-8.7566E-05	0.21719	0.00010171	468.3053021537102	54.753	1.1335	54.753	54.405	55.539	0					112	41	4	0	0	0	0.19197	1	12978	12978		44.407	4.4497	1	8928500			25299	9259	14421	14422	31680	31680					0.12647244927802603
LPNPRILL	8	Unmodified	_LPNPRILL_					0	0	0		ENST00000304677.2_1_14:21249334-21249412:+|nuORF	ENST00000304677.2_1_14:21249334-21249412:+|nuORF	ENST00000304677.2_1_14:21249334-21249412:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.305419921875	2	468.30547	934.596387	0.54666	0.000256	-0.40491	-0.00018962	0.14175	6.638E-05	468.3052150298512	54.797	1.1537	54.782	54.415	55.569	-0.015919					111	41	4	0	0	0	0.19197	1	12980	12980		44.407	6.2558	1	9980200			25300	9259	14421	14422	31681	31681					0.12647244927802603
LPNPTLVTI	9	Unmodified	_LPNPTLVTI_					0	0	0		ENSG00000082213|ENST00000325366|C5orf22;nc|nan|Q49AR2-3|C5orf22;ENST00000504866.1_1_5:31545783-31553006:+|nuORF;nc|nan|Q49AR2-2|C5orf22	ENSG00000082213|ENST00000325366|C5orf22	ENSG00000082213|ENST00000325366|C5orf22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2948303222656	2	484.294768	966.574983	0.2421	0.00011725	-0.10542	-5.1055E-05	0.13668	6.6194E-05	484.29459789992336	70.936	0.91901	70.936	70.512	71.431	0					82	32	3	0	0	0	0.0023784	2	17962	17962;18009		107.19	39.106	1	2687200			25301	1196	14422	14423	31682;31683	31682					0.09035815108438783
LPNPTLVTI	9	Unmodified	_LPNPTLVTI_					0	0	0		ENSG00000082213|ENST00000325366|C5orf22;nc|nan|Q49AR2-3|C5orf22;ENST00000504866.1_1_5:31545783-31553006:+|nuORF;nc|nan|Q49AR2-2|C5orf22	ENSG00000082213|ENST00000325366|C5orf22	ENSG00000082213|ENST00000325366|C5orf22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2947692871094	2	484.294768	966.574983	0.24233	0.00011736	-0.095422	-4.6212E-05	0.14691	7.1146E-05	484.2946276339068	70.857	0.94229	70.918	70.521	71.463	0.060783					80	33	3	0	0	0	0.0023784	2	17944	17944;17992		107.19	29.038	1	2832700			25302	1196	14422	14423	31684;31685	31684					0.09035815108438783
LPNPTLVTI	9	Unmodified	_LPNPTLVTI_					0	0	0		ENSG00000082213|ENST00000325366|C5orf22;nc|nan|Q49AR2-3|C5orf22;ENST00000504866.1_1_5:31545783-31553006:+|nuORF;nc|nan|Q49AR2-2|C5orf22	ENSG00000082213|ENST00000325366|C5orf22	ENSG00000082213|ENST00000325366|C5orf22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.2947692871094	2	484.294768	966.574983	0.37338	0.00018083	-0.17094	-8.2784E-05	0.20245	9.8045E-05	484.2945666899189	70.914	0.96308	70.889	70.466	71.429	-0.024872					86	34	3	0	0	0	0.018449	2	17967	17967;18017		66.457	16.524	1	2566600			25303	1196	14422	14423	31686;31687	31686					0.09035815108438783
LPPAGTLFAP	10	Unmodified	_LPPAGTLFAP_					0	0	0		ENST00000395882.5_1_9:87285474-87285522:+|nuORF	ENST00000395882.5_1_9:87285474-87285522:+|nuORF	ENST00000395882.5_1_9:87285474-87285522:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2978820800781	2	492.28166	982.548768	0.56187	0.0002766	-0.4792	-0.0002359	0.082674	4.0699E-05	492.28138663813166	53.676	0.31325	53.676	53.493	53.806	0					15	11	2	0	0	0	0.2892	1	12717	12717		21.747	0	1	118800			25304	10101	14423	14424	31688	31688					0.05679545936936847
LPPAIAVTK	9	Unmodified	_LPPAIAVTK_					0	0	0		ENST00000525556.1_1_8:61878844-61880304:-|nuORF	ENST00000525556.1_1_8:61878844-61880304:-|nuORF	ENST00000525556.1_1_8:61878844-61880304:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2920227050781	2	455.292028	908.569503	0.23152	0.00010541	-0.10619	-4.8348E-05	0.12533	5.7063E-05	455.2919048485199	40.569	1.2203	40.569	40.161	41.382	0					107	44	3	0	0	0	0.26612	1	8663	8663		13.906	0	1	1041000			25305	11540	14424	14425	31689	31689					0.1115613631660608
LPPAPCLLLRT	11	Unmodified	_LPPAPCLLLRT_					0	0	0		ENST00000461325.1_1_3:52550214-52551339:+|nuORF	ENST00000461325.1_1_3:52550214-52551339:+|nuORF	ENST00000461325.1_1_3:52550214-52551339:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.85693359375	2	597.357376	1192.7002	0.5263	0.00031439	0.94113	0.00056219	1.4674	0.00087658	597.3585424498953	90.185	1.4279	90.185	89.495	90.923	0					313	115	4	0	0	0	0.44828	1	24079	24079		4.897	0.56777	1	1038300			25306	10744	14425	14426	31690	31690					0.11155783973140387
LPPAPFPVV	9	Unmodified	_LPPAPFPVV_					0	0	0		ENSG00000167987|ENST00000301765|VPS37C	REV__ENST00000492220.1_1_1:150381497-150445807:+|nuORF	REV__ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.7811279296875	2	468.781296	935.54804	-0.075078	-3.5195E-05	-0.30552	-0.00014322	-0.3806	-0.00017842	468.7811665911368	76.3	0.79134	76.3	76.021	76.812	0					46	27	2	0	0	0	0.11229	1	19673	19673		36.466	25.642	1	251630			25307	17038	14426	14427	31691	31691					0.07768751287903797
LPPAPFPVV	9	Unmodified	_LPPAPFPVV_					0	0	0		ENSG00000167987|ENST00000301765|VPS37C	REV__ENST00000492220.1_1_1:150381497-150445807:+|nuORF	REV__ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2668762207031	2	468.781296	935.54804	-0.072352	-3.3917E-05	0.17497	8.2021E-05	0.10261	4.8104E-05	468.7811975163256	76.264	0.7034	76.318	76.02	76.724	0.053421					32	24	2	0	0	0	0.24542	1	19658	19658		14.582	9.351	1	247280			25308	17038	14426	14427	31692	31692					0.07768751287903797
LPPAPFPVV	9	Unmodified	_LPPAPFPVV_					0	0	0		ENSG00000167987|ENST00000301765|VPS37C	REV__ENST00000492220.1_1_1:150381497-150445807:+|nuORF	REV__ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7815246582031	2	468.781296	935.54804	0.29175	0.00013676	-0.63701	-0.00029862	-0.34527	-0.00016185	468.7810687714124	76.372	0.80893	76.341	76.02	76.828	-0.031479					51	29	2	0	0	0	0.21902	1	19641	19641		20.871	14.148	1	291240			25309	17038	14426	14427	31693	31693					0.07768751287903797
LPPAQLYHWV	10	Unmodified	_LPPAQLYHWV_					0	0	0		ENSG00000125741|ENST00000263275|OPA3	ENSG00000125741|ENST00000263275|OPA3	ENSG00000125741|ENST00000263275|OPA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.55859375	3	408.557236	1222.64988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.436	1	17.436	16.936	17.936	0								0	0	0	0.37666	1	1629	1629		3.5871	0.26742	1				25310	3228	14427	14428	31694	31694					0.0474599763963397
LPPASHPGP	9	Unmodified	_LPPASHPGP_					0	0	0			REV__ENST00000334554.11_1_22:20132949-20133189:+|nuORF	REV__ENST00000334554.11_1_22:20132949-20133189:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.2716064453125	2	436.734877	871.455202	-0.01533	-6.6953E-06	0.25509	0.00011141	0.23976	0.00010471	436.73489210446724	43.972	0.44395	44.056	43.765	44.209	0.083992					23	16	2	0	0	0	0.24913	1	9647	9647		12.532	5.2423	1	330090	+		25311	20063	14428	14429	31695	31695					0.01433246554518064
LPPASHPGP	9	Unmodified	_LPPASHPGP_					0	0	0			REV__ENST00000334554.11_1_22:20132949-20133189:+|nuORF	REV__ENST00000334554.11_1_22:20132949-20133189:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	436.734877	871.455202	-0.0072548	-3.1684E-06	0.054161	2.3654E-05	0.046906	2.0486E-05	436.7348983407724	44.199	0.44915	44.199	43.959	44.408	0	0.081656	-8.4339E-06	NaN	7.9102	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271440	+		25312	20063	14428	14429							0.01433246554518064
LPPCLLNR	8	Unmodified	_LPPCLLNR_					0	0	0		ENSG00000185742|ENST00000327419|C11orf87	ENSG00000185742|ENST00000327419|C11orf87	ENSG00000185742|ENST00000327419|C11orf87	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.2770080566406	2	463.26803	924.521507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.495	1	39.594	39.094	40.094	0.099407								0	0	0	0.33941	1	8329	8329		19.439	0	1				25313	7554	14429	14430	31696	31696					0.05622739124930831
LPPDFIFGED	10	Unmodified	_LPPDFIFGED_					0	0	0		nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.2771606445312	2	575.276772	1148.53899	0.39731	0.00022856	0.58	0.00033366	0.97731	0.00056222	575.2765766374096	58.727	1.0153	58.818	58.393	59.408	0.091301					60	31	3	0	0	0	0.22916	1	14202	14202		29.082	2.1979	1	253510			25314	5335	14430	14431	31697	31697					-0.029336868590689846
LPPDFIFGED	10	Unmodified	_LPPDFIFGED_					0	0	0		nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	575.276772	1148.53899	0.25498	0.00014668	0.61967	0.00035648	0.87465	0.00050316	575.2768016748862	58.876	1.0607	58.876	58.5	59.56	0	0.028654	0.00017379	NaN	29.082	58	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325810			25315	5335	14430	14431							-0.029336868590689846
LPPDFIFGED	10	Unmodified	_LPPDFIFGED_					0	0	0		nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	575.276772	1148.53899	0.3347	0.00019254	0.25296	0.00014552	0.58766	0.00033807	575.2765976825813	58.862	0.73848	58.848	58.631	59.37	-0.014271	0.00061009	-0.00024812	NaN	29.082	56	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369400			25316	5335	14430	14431							-0.029336868590689846
LPPEKRSV	8	Unmodified	_LPPEKRSV_					0	0	0			REV__nc|ENSG00000101868|P09884|POLA1	REV__nc|ENSG00000101868|P09884|POLA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.2770080566406	2	463.276909	924.539266	0.32219	0.00014927	-0.10797	-5.0022E-05	0.21422	9.9243E-05	463.2768550585148	47.03	0.56315	47.03	46.789	47.352	0					38	19	3	0	0	0	0.31088	1	10698	10698		28.487	0	1	513870	+		25317	14291	14431	14432	31698	31698					0.0739777765143117
LPPELHHKGF	10	Unmodified	_LPPELHHKGF_					0	0	0		ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.323974609375	2	587.822015	1173.62948	0.10932	6.4264E-05	1.512	0.00088879	1.6213	0.00095305	587.8236396502582	59.524	0.60813	59.619	59.382	59.99	0.095093					39	21	3	0	0	0	0.3156	1	14480	14480		3.5965	0.31518	1	1373000			25318	891	14432	14433	31699	31699					0.049608269798454785
LPPELLAEI	9	Unmodified	_LPPELLAEI_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2735900878906	2	497.794601	993.574648	0.36768	0.00018303	0.052052	2.5911E-05	0.41974	0.00020894	497.7946566937613	80.146	0.56384	80.146	79.926	80.49	0					30	20	2	0	0	0	0.21389	1	20821	20821		25.399	10.561	1	151530			25319	5810	14433	14434	31700	31700					0.07760395388584129
LPPELLAEI	9	Unmodified	_LPPELLAEI_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.27362060546875	2	497.794601	993.574648	0.33391	0.00016622	-0.01403	-6.9841E-06	0.31988	0.00015924	497.7946465571111	80.157	0.54594	80.222	79.921	80.467	0.065094					31	20	2	0	0	0	0.22061	1	20815	20815		18.146	4.2403	1	132970			25320	5810	14433	14434	31701	31701					0.07760395388584129
LPPELLAEI	9	Unmodified	_LPPELLAEI_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2740783691406	2	497.794601	993.574648	0.35498	0.00017671	-0.61395	-0.00030562	-0.25897	-0.00012892	497.79453103090805	80.334	0.55046	80.307	79.977	80.527	-0.026825					24	18	2	0	0	0	0.23784	1	20784	20784		19.257	3.4098	1	105760			25321	5810	14433	14434	31702	31702					0.07760395388584129
LPPENLEI	8	Unmodified	_LPPENLEI_					0	0	0			REV__ENSG00000142507|ENST00000270586|PSMB6	REV__ENSG00000142507|ENST00000270586|PSMB6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.7555236816406	2	462.755475	923.496398	0.030333	1.4037E-05	0.1629	7.5384E-05	0.19324	8.9421E-05	462.7554633163664	63.075	1.0586	63.075	62.637	63.695	0					69	38	2	0	0	0	0.095164	1	15598	15598		61.357	0	1	1060300	+		25322	16120	14434	14435	31703	31703					0.031589628033202644
LPPESTQV	8	Unmodified	_LPPESTQV_					0	0	0		ENSG00000095059|ENST00000210060|DHPS;ENST00000593473.1_1_19:12790962-12792580:-|nuORF;nc|ENSG00000095059|P49366-2|DHPS	ENSG00000095059|ENST00000210060|DHPS	ENSG00000095059|ENST00000210060|DHPS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.576171875	2	435.732	869.449448	-0.18135	-7.9021E-05	-0.22643	-9.8662E-05	-0.40778	-0.00017768	435.73193680709454	38.226	2.1416	38.226	37.503	39.644	0					108	76	2	0	0	0	0.32886	1	7943	7943		15.847	0	1	193670			25323	1446	14435	14436	31704	31704					0.009501032521939123
LPPEVMLSI	9	Oxidation (M)	_LPPEVM(Oxidation (M))LSI_		LPPEVM(1)LSI		LPPEVM(68)LSI	0	0	1		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7805480957031	2	507.780636	1013.54672	0.38361	0.00019479	0.095467	4.8476E-05	0.47908	0.00024327	507.78028082910123	71.794	0.93659	71.794	71.491	72.428	0					58	33	2	0	0	0	0.017391	2	18288	18288;18340		68.081	13.307	1	346700			25324	2835	14436	14437	31705;31706	31705		357			0.04048749136859442
LPPEVMLSI	9	Oxidation (M)	_LPPEVM(Oxidation (M))LSI_		LPPEVM(1)LSI		LPPEVM(85)LSI	0	0	1		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.78033447265625	2	507.780636	1013.54672	0.34937	0.0001774	-0.063234	-3.2109E-05	0.28614	0.00014529	507.78021006079973	71.771	0.97483	71.828	71.487	72.462	0.056572					66	35	3	0	0	0	0.006189	2	18302	18253;18302		85.272	14.138	1	382370			25325	2835	14436	14437	31707;31708	31708		357			0.04048749136859442
LPPEVMLSI	9	Oxidation (M)	_LPPEVM(Oxidation (M))LSI_		LPPEVM(1)LSI		LPPEVM(52)LSI	0	0	1		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.7804260253906	2	507.780636	1013.54672	0.37828	0.00019208	0.086894	4.4123E-05	0.46517	0.00023621	507.7802700170109	71.87	0.94643	71.843	71.452	72.398	-0.027275					53	33	2	0	0	0	0.051692	1	18373	18373		52.268	6.2474	1	361110			25326	2835	14436	14437	31709	31709		357			0.04048749136859442
LPPEVNRI	8	Unmodified	_LPPEVNRI_					0	0	0		ENST00000478050.1_1_2:24296944-24299099:-|nuORF;ENSG00000115128|ENST00000233468|SF3B6	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENST00000478050.1_1_2:24296944-24299099:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.27685546875	2	469.276909	936.539266	-0.13992	-6.5662E-05	-0.062048	-2.9117E-05	-0.20197	-9.4779E-05	469.2770073526459	41.046	0.75893	41.046	40.796	41.555	0					69	27	3	0	0	0	0.077335	1	8900	8900		65.235	3.6331	1	5079700			25327	2608	14437	14438	31710	31710					0.06845777651415119
LPPEVRAQL	9	Unmodified	_LPPEVRAQL_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;DIP2B|p.Y842Lfs*2|1|0.12|ENSG00000066084|chr12:50706652-50706653|-/T|frameshift_variant;ENST00000549620.5_1_12:50898851-51072694:+|nuORF	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2847900390625	2	511.803291	1021.59203	0.38104	0.00019502	0.96972	0.0004963	1.3508	0.00069132	511.8040661313923	52.507	0.38085	52.558	52.441	52.822	0.050575					19	13	2	0	0	0	0.22674	1	12370	12370		17.113	0	1	217890			25328	832	14438	14439	31711	31711					0.08209735714228827
LPPEYASTV	9	Unmodified	_LPPEYASTV_					0	0	0		ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	ENSG00000178913|ENST00000313368|TAF7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7537841796875	2	488.752933	975.491313	0.29457	0.00014397	0.90907	0.00044431	1.2036	0.00058828	488.7533472060228	46.978	0.61501	47.031	46.872	47.487	0.052574					36	22	2	0	0	0	0.11397	1	10583	10583		41.84	14.956	1	387290			25329	7083	14439	14440	31712	31712					0.0025865894070875584
LPPGLGREGP	10	Unmodified	_LPPGLGREGP_					0	0	0		ENST00000354161.7_1_7:100464226-100464418:+|nuORF	ENST00000354161.7_1_7:100464226-100464418:+|nuORF	ENST00000354161.7_1_7:100464226-100464418:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.8217468261719	2	496.779816	991.545079	0.50416	0.00025046	0.13002	6.4593E-05	0.63418	0.00031505	496.7798397622911	35.709	0.70275	35.709	35.466	36.168	0					44	25	2	0	0	0	0.31267	1	7297	7297		14.838	0	1	434430			25330	9588	14440	14441	31713	31713					0.0489687616310448
LPPGLGREGP	10	Unmodified	_LPPGLGREGP_					0	0	0		ENST00000354161.7_1_7:100464226-100464418:+|nuORF	ENST00000354161.7_1_7:100464226-100464418:+|nuORF	ENST00000354161.7_1_7:100464226-100464418:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.8216857910156	2	496.779816	991.545079	0.28458	0.00014137	0.26379	0.00013105	0.54837	0.00027242	496.77992944488165	35.57	0.57569	35.656	35.537	36.113	0.08625					39	20	2	0	0	0	0.31267	1	7251	7251		14.838	2.3067	1	421600			25331	9588	14440	14441	31714	31714					0.0489687616310448
LPPGPTPFL	9	Unmodified	_LPPGPTPFL_					0	0	0			REV__ENST00000225688.3_1_17:17398000-17398240:-|nuORF	REV__ENST00000225688.3_1_17:17398000-17398240:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7709655761719	2	469.770929	937.527304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.848	1	65.836	65.336	66.336	-0.011337								0	0	0	0.19325	1	16437	16437		24.674	2.9272	1		+		25332	19438	14441	14442	31715	31715					0.056041609082285504
LPPHIFAI	8	Unmodified	_LPPHIFAI_					0	0	0		MYO10|p.L1518Mfs*53|1|0.04|ENSG00000145555|chr5:16676145-16676146|-/AGACCAT|frameshift_variant;ENSG00000145555|ENST00000513610|MYO10	MYO10|p.L1518Mfs*53|1|0.04|ENSG00000145555|chr5:16676145-16676146|-/AGACCAT|frameshift_variant	MYO10|p.L1518Mfs*53|1|0.04|ENSG00000145555|chr5:16676145-16676146|-/AGACCAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.68218994140625	2	454.273638	906.532724	-0.0032455	-1.4744E-06	-0.14144	-6.4252E-05	-0.14468	-6.5726E-05	454.2734355523166	61.438	1.2412	61.438	61.155	62.396	0					60	46	2	0	0	0	0.14868	1	15045	15045		52.334	10.517	1	180950			25333	4658	14442	14443	31716	31716					0.07571884490698721
LPPHIFAI	8	Unmodified	_LPPHIFAI_					0	0	0		MYO10|p.L1518Mfs*53|1|0.04|ENSG00000145555|chr5:16676145-16676146|-/AGACCAT|frameshift_variant;ENSG00000145555|ENST00000513610|MYO10	MYO10|p.L1518Mfs*53|1|0.04|ENSG00000145555|chr5:16676145-16676146|-/AGACCAT|frameshift_variant	MYO10|p.L1518Mfs*53|1|0.04|ENSG00000145555|chr5:16676145-16676146|-/AGACCAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.6824035644531	2	454.273638	906.532724	-0.13294	-6.0391E-05	0.10946	4.9726E-05	-0.023479	-1.0666E-05	454.27351964235004	61.491	0.94754	61.481	61.194	62.141	-0.0094566					43	34	2	0	0	0	0.21989	1	15015	15015		41.817	9.3636	1	144050			25334	4658	14442	14443	31717	31717					0.07571884490698721
LPPHQKLS	8	Unmodified	_LPPHQKLS_					0	0	0			REV__nc|ENSG00000166821|O75192-2|PEX11A	REV__nc|ENSG00000166821|O75192-2|PEX11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7557678222656	2	460.271627	918.528701	0.14793	6.8087E-05	0.0092256	4.2463E-06	0.15715	7.2334E-05	460.2714953812152	32.761	0.90261	32.815	32.526	33.429	0.054371					57	32	2	0	0	0	0.34092	1	6353	6353		13.508	0.97634	1	271600	+		25335	17342	14443	14444	31718	31718					0.06617794996998327
LPPIKVLVV	9	Unmodified	_LPPIKVLVV_					0	0	0		ENSG00000056736|ENST00000288167|IL17RB;ENST00000475124.1_1_3:53892553-53899332:+|nuORF	ENSG00000056736|ENST00000288167|IL17RB	ENSG00000056736|ENST00000288167|IL17RB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.34173583984375	2	489.341521	976.668489	0.37921	0.00018556	0.35777	0.00017507	0.73698	0.00036063	489.3415656511147	65.534	0.73868	65.534	65.268	66.007	0					59	26	3	0	0	0	0.027237	2	16332	16332;16386		61.357	40.904	1	1090800			25336	714	14444	14445	31719;31720	31719					0.17922159281522454
LPPIKVLVV	9	Unmodified	_LPPIKVLVV_					0	0	0		ENSG00000056736|ENST00000288167|IL17RB;ENST00000475124.1_1_3:53892553-53899332:+|nuORF	ENSG00000056736|ENST00000288167|IL17RB	ENSG00000056736|ENST00000288167|IL17RB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.34173583984375	2	489.341521	976.668489	0.094796	4.6387E-05	0.58308	0.00028532	0.67787	0.00033171	489.34167626887415	65.44	0.67662	65.528	65.27	65.947	0.088882					59	24	3	0	0	0	0.027237	2	16307	16307;16356		61.357	39.611	1	1019400			25337	714	14444	14445	31721;31722	31721					0.17922159281522454
LPPIKVLVV	9	Unmodified	_LPPIKVLVV_					0	0	0		ENSG00000056736|ENST00000288167|IL17RB;ENST00000475124.1_1_3:53892553-53899332:+|nuORF	ENSG00000056736|ENST00000288167|IL17RB	ENSG00000056736|ENST00000288167|IL17RB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.3415832519531	2	489.341521	976.668489	0.39523	0.0001934	0.3084	0.00015091	0.70363	0.00034431	489.341531762196	65.525	0.63552	65.514	65.257	65.892	-0.011337					57	22	3	0	0	0	0.051692	2	16325	16325;16366		52.268	35.326	1	1047100			25338	714	14444	14445	31723;31724	31723					0.17922159281522454
LPPKFRIS	8	Unmodified	_LPPKFRIS_					0	0	0			REV__ENSG00000182150|ENST00000653738|ERCC6L2	REV__ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2974853515625	2	479.297645	956.580737	0.16586	7.9498E-05	0.13218	6.3356E-05	0.29805	0.00014285	479.29753111167344	46.068	0.78727	46.068	45.805	46.592	0					55	28	3	0	0	0	0.33441	1	10355	10355		26.884	3.7352	1	829220	+		25339	18178	14445	14446	31725	31725					0.10070958410767616
LPPKFRIS	8	Unmodified	_LPPKFRIS_					0	0	0			REV__ENSG00000182150|ENST00000653738|ERCC6L2	REV__ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.29791259765625	2	479.297645	956.580737	0.015916	7.6284E-06	-0.078439	-3.7596E-05	-0.062523	-2.9967E-05	479.2974439036835	46.082	0.7923	46.142	45.844	46.636	0.059834					56	28	3	0	0	0	0.33441	1	10333	10333		26.884	3.7352	1	820410	+		25340	18178	14445	14446	31726	31726					0.10070958410767616
LPPLAARL	8	Unmodified	_LPPLAARL_					0	0	0		ENST00000357681.9_1_1:203652030-203652153:+|nuORF	ENST00000357681.9_1_1:203652030-203652153:+|nuORF	ENST00000357681.9_1_1:203652030-203652153:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.7797546386719	2	425.779088	849.543623	0.034793	1.4814E-05	1.1721	0.00049906	1.2069	0.00051387	425.7796432288783	48.877	0.54875	48.877	48.694	49.243	0					36	19	2	0	0	0	0.19197	1	11232	11232		44.407	0	1	866630			25341	9636	14446	14447	31727	31727					0.11283286865000264
LPPLAARL	8	Unmodified	_LPPLAARL_					0	0	0		ENST00000357681.9_1_1:203652030-203652153:+|nuORF	ENST00000357681.9_1_1:203652030-203652153:+|nuORF	ENST00000357681.9_1_1:203652030-203652153:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	425.779088	849.543623	0.0013679	5.8243E-07	1.5187	0.00064663	1.5201	0.00064721	425.77962232336284	48.886	0.44446	48.931	48.716	49.16	0.044891	0.049961	0.0002847	NaN	44.407	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	959800			25342	9636	14446	14447							0.11283286865000264
LPPLAARL	8	Unmodified	_LPPLAARL_					0	0	0		ENST00000357681.9_1_1:203652030-203652153:+|nuORF	ENST00000357681.9_1_1:203652030-203652153:+|nuORF	ENST00000357681.9_1_1:203652030-203652153:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	425.779088	849.543623	-0.12387	-5.2743E-05	0.96739	0.00041189	0.84351	0.00035915	425.7795131589541	48.803	0.58436	48.835	48.684	49.268	0.032043	-0.045638	-0.00018478	NaN	44.407	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	939240			25343	9636	14446	14447							0.11283286865000264
LPPLLVRFF	9	Unmodified	_LPPLLVRFF_					0	0	0		ENST00000555137.5_1_14:21731481-21737553:-|nuORF	ENST00000555137.5_1_14:21731481-21737553:-|nuORF	ENST00000555137.5_1_14:21731481-21737553:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.7847900390625	2	551.344595	1100.67464	0.57665	0.00031793	-1.9268	-0.0010624	-1.3502	-0.00074442	551.8457953431001	45.762	0.57885	45.827	45.595	46.174	0.065048					28	20	2	0	0	0	0.25291	1	10215	10215		9.3474	1.4373	1	193790			25344	11842	14447	14448	31728	31728					0.1283267751305175
LPPLMSRA	8	Unmodified	_LPPLMSRA_					0	0	0			REV__ENST00000558084.5_1_7:152132979-152133087:-|nuORF	REV__ENST00000558084.5_1_7:152132979-152133087:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.7519226074219	2	442.754756	883.494958	-0.53208	-0.00023558	-4.2053	-0.0018619	-4.7374	-0.0020975	442.752584183684	59.985	0.51211	60.08	59.855	60.368	0.095093					26	18	2	0	0	0	0.3671	1	14669	14669		23.148	1.4018	1	356920	+		25345	22277	14448	14449	31729	31729					0.04855050233584279
LPPLPHIL	8	Unmodified	_LPPLPHIL_					0	0	0		ENST00000311956.8_1_11:46699925-46700024:-|nuORF	ENST00000311956.8_1_11:46699925-46700024:-|nuORF	ENST00000311956.8_1_11:46699925-46700024:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2474060058594	2	450.289288	898.564024	0.20492	9.2273E-05	-0.40944	-0.00018437	-0.20452	-9.2092E-05	450.2890575108776	67.984	0.4182	67.984	67.732	68.15	0					26	14	2	0	0	0	0.29242	1	17034	17034		32.454	0	1	173010			25346	9319	14449	14450	31730	31730					0.11068457524800124
LPPLPHIL	8	Unmodified	_LPPLPHIL_					0	0	0		ENST00000311956.8_1_11:46699925-46700024:-|nuORF	ENST00000311956.8_1_11:46699925-46700024:-|nuORF	ENST00000311956.8_1_11:46699925-46700024:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.24725341796875	2	450.289288	898.564024	0.3119	0.00014044	-0.49319	-0.00022208	-0.18129	-8.1633E-05	450.2889038764861	67.903	0.39638	67.981	67.744	68.14	0.078041					21	13	2	0	0	0	0.26384	1	17051	17051		32.454	0	1	152140			25347	9319	14449	14450	31731	31731					0.11068457524800124
LPPLPKRPAL	10	Unmodified	_LPPLPKRPAL_					0	0	0		nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1	nc|ENSG00000152601|Q9NR56-3|MBNL1	nc|ENSG00000152601|Q9NR56-3|MBNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.3609619140625	2	551.360776	1100.707	0.55656	0.00030686	-0.31982	-0.00017634	0.23673	0.00013052	551.3604886365183	45.643	0.76086	45.703	45.223	45.984	0.059834					55	26	3	0	0	0	0.2593	1	10198	10198		25.399	4.9457	1	654340			25348	5029	14450	14451	31732	31732					0.160674649160228
LPPLPKRPAL	10	Unmodified	_LPPLPKRPAL_					0	0	0		nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1	nc|ENSG00000152601|Q9NR56-3|MBNL1	nc|ENSG00000152601|Q9NR56-3|MBNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.361083984375	2	551.360776	1100.707	0.53162	0.00029311	-0.32956	-0.00018171	0.20205	0.0001114	551.36054779001	45.591	0.71262	45.656	45.33	46.043	0.065048					73	25	4	0	0	0	0.21644	1	10201	10201		30.637	10.183	1	481040			25349	5029	14450	14451	31733	31733					0.160674649160228
LPPLRPRL	8	Unmodified	_LPPLRPRL_					0	0	0		ENSG00000180929|ENST00000322241|GPR62;ENST00000372441.1_1_6:43477335-43478064:-|nuORF	ENSG00000180929|ENST00000322241|GPR62	ENSG00000180929|ENST00000322241|GPR62	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2646484375	2	481.318912	960.62327	0.13076	6.2939E-05	0.29739	0.00014314	0.42816	0.00020608	481.31906421381655	42.466	0.50986	42.552	42.352	42.861	0.085197					27	18	2	0	0	0	0.34046	1	9307	9307		14.582	0	1	277620			25350	7213	14451	14452	31734	31734					0.14138353538987758
LPPLVPAI	8	Unmodified	_LPPLVPAI_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2705078125	2	410.270564	818.526576	0.11913	4.8875E-05	-0.077794	-3.1917E-05	0.041334	1.6958E-05	410.2704333935178	77.132	1.4761	77.132	76.693	78.169	0					146	54	4	0	0	0	0.027502	5	19896	19804;19853;19896;19946;19999		91.927	14.731	1	5879800			25351	1349	14452	14453	31735;31736;31737;31738;31739	31737					0.11005366259178118
LPPLVPAI	8	Unmodified	_LPPLVPAI_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.27044677734375	2	410.270564	818.526576	0.20125	8.2569E-05	-0.18714	-7.6777E-05	0.014116	5.7913E-06	410.27040077091374	76.988	1.5561	77.043	76.667	78.223	0.05542					150	55	5	0	0	0	0.015002	5	19838	19788;19838;19880;19931;19982		108.76	16.831	1	5755000			25352	1349	14452	14453	31740;31741;31742;31743;31744	31741					0.11005366259178118
LPPLVPAI	8	Unmodified	_LPPLVPAI_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2704772949219	2	410.270564	818.526576	0.42615	0.00017484	-0.38078	-0.00015622	0.045373	1.8615E-05	410.2703102124737	77.131	1.5934	77.099	76.654	78.247	-0.031334					155	58	5	0	0	0	0.015002	4	19862	19815;19862;19914;19962		108.76	31.562	1	5541700			25353	1349	14452	14453	31745;31746;31747;31748	31746					0.11005366259178118
LPPLYVRI	8	Unmodified	_LPPLYVRI_					0	0	0			REV__ENSG00000047644|ENST00000380861|WWC3	REV__ENSG00000047644|ENST00000380861|WWC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8081359863281	2	485.807845	969.601138	0.28109	0.00013656	1.2268	0.00059601	1.5079	0.00073256	485.80827310280665	63.252	0.76284	63.252	62.984	63.746	0					55	27	3	0	0	0	0.082568	1	15666	15666		63.563	3.1733	1	712460	+		25354	13544	14453	14454	31749	31749					0.11512129070570154
LPPLYVRI	8	Unmodified	_LPPLYVRI_					0	0	0			REV__ENSG00000047644|ENST00000380861|WWC3	REV__ENSG00000047644|ENST00000380861|WWC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80816650390625	2	485.807845	969.601138	0.32683	0.00015878	1.0257	0.00049831	1.3526	0.00065708	485.8081660859639	63.133	0.66037	63.229	62.931	63.591	0.095722					52	23	3	0	0	0	0.082568	2	15610	15610;15663		63.563	6.0342	1	721850	+		25355	13544	14453	14454	31750;31751	31750					0.11512129070570154
LPPLYVRI	8	Unmodified	_LPPLYVRI_					0	0	0			REV__ENSG00000047644|ENST00000380861|WWC3	REV__ENSG00000047644|ENST00000380861|WWC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8080139160156	2	485.807845	969.601138	0.33874	0.00016456	1.0568	0.00051343	1.3956	0.00067799	485.80815844163766	63.251	0.67886	63.243	62.913	63.592	-0.0085526					53	24	3	0	0	0	0.082568	1	15659	15659		63.563	3.1733	1	723790	+		25356	13544	14453	14454	31752	31752					0.11512129070570154
LPPMVINFL	9	Unmodified	_LPPMVINFL_					0	0	0			REV__ENSG00000176555|ENST00000319988|OR4S1	REV__ENSG00000176555|ENST00000319988|OR4S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.30126953125	2	522.301539	1042.58852	0.1323	6.9099E-05	-0.61362	-0.00032049	-0.48132	-0.0002514	522.3011477371903	25.721	0.43244	25.683	25.47	25.902	-0.038671					26	14	3	0	0	0	0.30623	1	4125	4125		7.9102	1.187	1	205110	+		25357	17944	14454	14455	31753	31753					0.06893349616007072
LPPNLYPTV	9	Unmodified	_LPPNLYPTV_					0	0	0		nc|ENSG00000010017|Q96S59-3|RANBP9;ENSG00000010017|ENST00000011619|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.287109375	2	507.286943	1012.55933	0.38642	0.00019603	0.28487	0.00014451	0.67129	0.00034054	507.2870302877818	64.677	2.038	64.677	63.889	65.927	0					207	74	4	0	0	0	0.0037552	5	16079	15991;16037;16079;16128;16206		96.285	54.19	1	2778900			25358	413	14455	14456	31754;31755;31756;31757;31758	31756					0.05355528591383063
LPPNLYPTV	9	Unmodified	_LPPNLYPTV_					0	0	0		nc|ENSG00000010017|Q96S59-3|RANBP9;ENSG00000010017|ENST00000011619|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2872314453125	2	507.286943	1012.55933	0.35786	0.00018154	0.3488	0.00017694	0.70665	0.00035848	507.287062084152	64.603	1.7494	64.696	64.066	65.815	0.09288					191	64	4	0	0	0	0.006189	4	16023	15976;16023;16073;16163		85.272	49.663	1	2839200			25359	413	14455	14456	31759;31760;31761;31762	31760					0.05355528591383063
LPPNLYPTV	9	Unmodified	_LPPNLYPTV_					0	0	0		nc|ENSG00000010017|Q96S59-3|RANBP9;ENSG00000010017|ENST00000011619|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	nc|ENSG00000010017|Q96S59-3|RANBP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2872314453125	2	507.286943	1012.55933	0.31076	0.00015764	0.36699	0.00018617	0.67775	0.00034381	507.287075552357	64.751	2.0117	64.742	63.851	65.863	-0.0095291					207	73	4	0	0	0	0.0037552	5	16067	16018;16067;16112;16196;16240		96.285	56.327	1	2679900			25360	413	14455	14456	31763;31764;31765;31766;31767	31764					0.05355528591383063
LPPNVASLI	9	Unmodified	_LPPNVASLI_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.2815856933594	2	462.28166	922.548768	-0.16231	-7.5033E-05	0.40353	0.00018654	0.24122	0.00011151	462.281711888515	73.535	1.009	73.535	73.02	74.029	0					80	35	3	0	0	0	0.034444	3	18778	18778;18828;18891		58.679	18.23	1	468920			25361	7362	14456	14457	31768;31769;31770	31768					0.08439545936960258
LPPNVASLI	9	Unmodified	_LPPNVASLI_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.28173828125	2	462.28166	922.548768	-0.065806	-3.0421E-05	0.27107	0.00012531	0.20527	9.4891E-05	462.2816692139138	73.504	0.8577	73.557	73.037	73.895	0.053833					73	30	3	0	0	0	0.017391	2	18750	18750;18805		68.081	27.632	1	436950			25362	7362	14456	14457	31771;31772	31771					0.08439545936960258
LPPNVASLI	9	Unmodified	_LPPNVASLI_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.28167724609375	2	462.28166	922.548768	0.1503	6.9481E-05	0.11433	5.2855E-05	0.26463	0.00012234	462.2816251661115	73.602	1.0108	73.571	73.124	74.135	-0.030663					80	36	3	0	0	0	0.034444	2	18810	18810;18872		58.679	18.23	1	501210			25363	7362	14456	14457	31773;31774	31773					0.08439545936960258
LPPNVASLI	9	Unmodified	_LPPNVASLI_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	462.28166	922.548768	0.1503	6.9481E-05	0.11433	5.2855E-05	0.26463	0.00012234	462.2816251661115	73.602	1.0108	73.571	73.124	74.135	-0.030663	0.016692	-0.00016056	NaN	68.081	80	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501210			25364	7362	14456	14457							0.08439545936960258
LPPNVQII	8	Unmodified	_LPPNVQII_					0	0	0		ENST00000496385.5_1_22:26849136-26861668:-|nuORF;ENST00000466781.5_1_22:26849201-26862270:-|nuORF;ENST00000464362.5_1_22:26849201-26861668:-|nuORF;nc|ENSG00000100099|Q9NQG7-2|HPS4;ENST00000439453.5_1_22:26849201-26866860:-|nuORF;ENST00000429411.5_1_22:26849201-26866860:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4	ENST00000496385.5_1_22:26849136-26861668:-|nuORF	ENST00000496385.5_1_22:26849136-26861668:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.2764587402344	2	447.276378	892.538203	0.30136	0.00013479	0.043884	1.9628E-05	0.34525	0.00015442	447.27633259644574	63.522	1.2715	63.618	63.122	64.393	0.095722					73	45	2	0	0	0	0.30517	1	15813	15813		30.225	5.5509	1	264410			25365	1531	14457	14458	31775	31775					0.08763563282514042
LPPNVQII	8	Unmodified	_LPPNVQII_					0	0	0		ENST00000496385.5_1_22:26849136-26861668:-|nuORF;ENST00000466781.5_1_22:26849201-26862270:-|nuORF;ENST00000464362.5_1_22:26849201-26861668:-|nuORF;nc|ENSG00000100099|Q9NQG7-2|HPS4;ENST00000439453.5_1_22:26849201-26866860:-|nuORF;ENST00000429411.5_1_22:26849201-26866860:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4	ENST00000496385.5_1_22:26849136-26861668:-|nuORF	ENST00000496385.5_1_22:26849136-26861668:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	447.276378	892.538203	0.3821	0.00017091	-0.22936	-0.00010259	0.15275	6.832E-05	447.27620405123264	63.594	1.1486	63.594	63.168	64.316	0	-0.041432	-0.00010889	NaN	30.225	71	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340170			25366	1531	14457	14458							0.08763563282514042
LPPNVQII	8	Unmodified	_LPPNVQII_					0	0	0		ENST00000496385.5_1_22:26849136-26861668:-|nuORF;ENST00000466781.5_1_22:26849201-26862270:-|nuORF;ENST00000464362.5_1_22:26849201-26861668:-|nuORF;nc|ENSG00000100099|Q9NQG7-2|HPS4;ENST00000439453.5_1_22:26849201-26866860:-|nuORF;ENST00000429411.5_1_22:26849201-26866860:-|nuORF;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4	ENST00000496385.5_1_22:26849136-26861668:-|nuORF	ENST00000496385.5_1_22:26849136-26861668:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	447.276378	892.538203	0.4273	0.00019112	-0.10394	-4.6491E-05	0.32336	0.00014463	447.2762331202304	63.703	1.5837	63.695	63.051	64.635	-0.0085526	0.058963	3.3026E-06	NaN	30.225	89	57	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297410			25367	1531	14457	14458							0.08763563282514042
LPPPAAKTV	9	Unmodified	_LPPPAAKTV_					0	0	0		ENST00000461845.1_1_2:85822886-85823939:+|nuORF;ENSG00000168894|ENST00000306368|RNF181	ENST00000461845.1_1_2:85822886-85823939:+|nuORF	ENST00000461845.1_1_2:85822886-85823939:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.276123046875	2	447.276378	892.538203	-0.065201	-2.9163E-05	-0.26289	-0.00011758	-0.32809	-0.00014675	447.27616022489804	27.979	1.7094	27.979	27.38	29.089	0					172	59	4	0	0	0	0.051692	2	4810	4810;4929		52.268	11.82	1	1273500			25368	6307	14458	14459	31776;31777	31776					0.08763563282502673
LPPPAAKTV	9	Unmodified	_LPPPAAKTV_					0	0	0		ENST00000461845.1_1_2:85822886-85823939:+|nuORF;ENSG00000168894|ENST00000306368|RNF181	ENST00000461845.1_1_2:85822886-85823939:+|nuORF	ENST00000461845.1_1_2:85822886-85823939:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.2761535644531	2	447.276378	892.538203	-0.11948	-5.3442E-05	0.17651	7.8949E-05	0.057027	2.5507E-05	447.276195821391	27.945	1.9952	27.94	27.233	29.228	-0.0042572					193	70	6	0	0	0	0.03069	3	4829	4829;4933;4989		60.074	13.153	1	1237400			25369	6307	14458	14459	31778;31779;31780	31778					0.08763563282502673
LPPPAAKTV	9	Unmodified	_LPPPAAKTV_					0	0	0		ENST00000461845.1_1_2:85822886-85823939:+|nuORF;ENSG00000168894|ENST00000306368|RNF181	ENST00000461845.1_1_2:85822886-85823939:+|nuORF	ENST00000461845.1_1_2:85822886-85823939:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.27618408203125	2	447.276378	892.538203	-0.11096	-4.9632E-05	-0.13515	-6.0449E-05	-0.24611	-0.00011008	447.2762033324784	27.984	1.8754	27.984	27.251	29.127	0.0004673					175	66	4	0	0	0	0.051692	3	4812	4812;4903;4950		52.268	11.82	1	1292000			25370	6307	14458	14459	31781;31782;31783	31781					0.08763563282502673
LPPPAATAAAP	11	Unmodified	_LPPPAATAAAP_					0	0	0		ENSG00000214336|ENST00000428390|FOXI3	ENSG00000214336|ENST00000428390|FOXI3	ENSG00000214336|ENST00000428390|FOXI3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.29254150390625	2	488.776742	975.538931	0.0066377	3.2443E-06	-0.21997	-0.00010751	-0.21333	-0.00010427	488.7763318042541	30.261	0.53582	30.288	30.019	30.555	0.027157					38	18	3	0	0	0	0.33306	1	5566	5566		19.257	0	1	254230			25371	8382	14459	14460	31784	31784					0.050183579315557836
LPPPFVPTL	9	Unmodified	_LPPPFVPTL_					0	0	0		ENST00000585839.5_1_19:14580313-14582593:+|nuORF;ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1	ENST00000585839.5_1_19:14580313-14582593:+|nuORF	ENST00000585839.5_1_19:14580313-14582593:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7945251464844	2	490.794404	979.574254	0.31359	0.00015391	-0.029526	-1.4491E-05	0.28406	0.00013942	490.7943754373454	81.317	1.1478	81.317	80.904	82.052	0					123	50	3	0	0	0	0.072844	4	21220	21126;21171;21220;21275		44.407	19.733	1	378190			25372	3089	14460	14461	31785;31786;31787;31788	31787					0.0836502045939369
LPPPFVPTL	9	Unmodified	_LPPPFVPTL_					0	0	0		ENST00000585839.5_1_19:14580313-14582593:+|nuORF;ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1	ENST00000585839.5_1_19:14580313-14582593:+|nuORF	ENST00000585839.5_1_19:14580313-14582593:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.79449462890625	2	490.794404	979.574254	0.059285	2.9097E-05	0.22243	0.00010917	0.28172	0.00013827	490.7944348189666	81.343	1.0826	81.412	80.91	81.992	0.068993					131	52	3	0	0	0	0.018072	4	21185	21119;21163;21185;21213		67.035	34.918	1	427140			25373	3089	14460	14461	31789;31790;31791;31792	31791					0.0836502045939369
LPPPFVPTL	9	Unmodified	_LPPPFVPTL_					0	0	0		ENST00000585839.5_1_19:14580313-14582593:+|nuORF;ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1	ENST00000585839.5_1_19:14580313-14582593:+|nuORF	ENST00000585839.5_1_19:14580313-14582593:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7945251464844	2	490.794404	979.574254	0.33845	0.00016611	0.057184	2.8066E-05	0.39563	0.00019417	490.7943390695288	81.465	1.0619	81.441	80.922	81.984	-0.02404					111	45	3	0	0	0	0.06608	2	21214	21115;21214		46.921	22.247	1	417890			25374	3089	14460	14461	31793;31794	31794					0.0836502045939369
LPPPGLTI	8	Unmodified	_LPPPGLTI_					0	0	0		nc|ENSG00000187098|O75030-11|MITF;nc|ENSG00000187098|O75030-10|MITF;MITF|p.R391Nfs*29|1|0.06|ENSG00000187098|chr3:69959412-69959413|-/AT|frameshift_variant;MITF|p.I392Kfs*28|1|0.04|ENSG00000187098|chr3:69959413-69959414|-/AA|frameshift_variant;nc|ENSG00000187098|O75030-9|MITF;nc|ENSG00000187098|O75030-12|MITF;nc|ENSG00000187098|O75030-4|MITF;nc|ENSG00000187098|O75030-3|MITF;nc|ENSG00000187098|O75030-8|MITF;nc|ENSG00000187098|O75030-7|MITF;nc|ENSG00000187098|O75030-6|MITF;nc|ENSG00000187098|O75030-2|MITF;nc|ENSG00000187098|O75030-5|MITF;ENSG00000187098|ENST00000352241|MITF	nc|ENSG00000187098|O75030-11|MITF	nc|ENSG00000187098|O75030-11|MITF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.2524108886719	2	404.252372	806.49019	-0.01488	-6.0151E-06	0.066378	2.6833E-05	0.051498	2.0818E-05	404.2522764471693	63.275	2.1473	63.275	62.526	64.673	0					181	78	3	0	0	0	0.018305	2	15792	15743;15792		104.31	8.1916	1	1174100			25375	7663	14461	14462	31795;31796	31796					0.0792048936248193
LPPPGLTI	8	Unmodified	_LPPPGLTI_					0	0	0		nc|ENSG00000187098|O75030-11|MITF;nc|ENSG00000187098|O75030-10|MITF;MITF|p.R391Nfs*29|1|0.06|ENSG00000187098|chr3:69959412-69959413|-/AT|frameshift_variant;MITF|p.I392Kfs*28|1|0.04|ENSG00000187098|chr3:69959413-69959414|-/AA|frameshift_variant;nc|ENSG00000187098|O75030-9|MITF;nc|ENSG00000187098|O75030-12|MITF;nc|ENSG00000187098|O75030-4|MITF;nc|ENSG00000187098|O75030-3|MITF;nc|ENSG00000187098|O75030-8|MITF;nc|ENSG00000187098|O75030-7|MITF;nc|ENSG00000187098|O75030-6|MITF;nc|ENSG00000187098|O75030-2|MITF;nc|ENSG00000187098|O75030-5|MITF;ENSG00000187098|ENST00000352241|MITF	nc|ENSG00000187098|O75030-11|MITF	nc|ENSG00000187098|O75030-11|MITF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2522277832031	2	404.252372	806.49019	-0.059999	-2.4255E-05	0.084254	3.406E-05	0.024254	9.8049E-06	404.2522914651223	63.181	2.3875	63.276	62.602	64.989	0.095726					178	86	3	0	0	0	0.018305	2	15666	15666;15712		104.31	8.1916	1	1293400			25376	7663	14461	14462	31797;31798	31797					0.0792048936248193
LPPPGLTI	8	Unmodified	_LPPPGLTI_					0	0	0		nc|ENSG00000187098|O75030-11|MITF;nc|ENSG00000187098|O75030-10|MITF;MITF|p.R391Nfs*29|1|0.06|ENSG00000187098|chr3:69959412-69959413|-/AT|frameshift_variant;MITF|p.I392Kfs*28|1|0.04|ENSG00000187098|chr3:69959413-69959414|-/AA|frameshift_variant;nc|ENSG00000187098|O75030-9|MITF;nc|ENSG00000187098|O75030-12|MITF;nc|ENSG00000187098|O75030-4|MITF;nc|ENSG00000187098|O75030-3|MITF;nc|ENSG00000187098|O75030-8|MITF;nc|ENSG00000187098|O75030-7|MITF;nc|ENSG00000187098|O75030-6|MITF;nc|ENSG00000187098|O75030-2|MITF;nc|ENSG00000187098|O75030-5|MITF;ENSG00000187098|ENST00000352241|MITF	nc|ENSG00000187098|O75030-11|MITF	nc|ENSG00000187098|O75030-11|MITF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2524108886719	2	404.252372	806.49019	-0.036714	-1.4842E-05	0.072555	2.9331E-05	0.035841	1.4489E-05	404.25229033946323	63.291	2.2108	63.283	62.542	64.753	-0.0085526					181	80	3	0	0	0	0.018305	1	15702	15702		104.31	8.1916	1	1176900			25377	7663	14461	14462	31799	31799					0.0792048936248193
LPPPGRPLF	9	Unmodified	_LPPPGRPLF_					0	0	0			REV__ENST00000378330.6_1_16:89346860-89347034:-|nuORF	REV__ENST00000378330.6_1_16:89346860-89347034:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2846984863281	2	497.297645	992.580737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.114	1	43.114	42.614	43.614	0								0	0	0	0.21357	1	9443	9443		18.135	1.0484	1		+		25378	20517	14462	14463	31800	31800					0.0841495841075357
LPPPGRPLF	9	Unmodified	_LPPPGRPLF_					0	0	0			REV__ENST00000378330.6_1_16:89346860-89347034:-|nuORF	REV__ENST00000378330.6_1_16:89346860-89347034:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.2844543457031	2	497.297645	992.580737	0.22965	0.00011421	-0.080826	-4.0195E-05	0.14883	7.4011E-05	497.2974168139092	42.621	0.59666	42.707	42.434	43.03	0.085201					31	21	2	0	0	0	0.23775	1	9370	9370		18.135	3.5533	1	436530	+		25379	20517	14462	14463	31801	31801					0.0841495841075357
LPPPGRPLF	9	Unmodified	_LPPPGRPLF_					0	0	0			REV__ENST00000378330.6_1_16:89346860-89347034:-|nuORF	REV__ENST00000378330.6_1_16:89346860-89347034:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2843933105469	2	497.297645	992.580737	0.25446	0.00012654	0.22375	0.00011127	0.47821	0.00023781	497.297589916316	42.529	0.5181	42.621	42.385	42.903	0.091362					28	18	2	0	0	0	0.23775	1	9336	9336		18.135	1.1927	1	443290	+		25380	20517	14462	14463	31802	31802					0.0841495841075357
LPPPGRPLF	9	Unmodified	_LPPPGRPLF_					0	0	0			REV__ENST00000378330.6_1_16:89346860-89347034:-|nuORF	REV__ENST00000378330.6_1_16:89346860-89347034:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	497.297645	992.580737	0.25446	0.00012654	0.22375	0.00011127	0.47821	0.00023781	497.297589916316	42.529	0.5181	42.621	42.385	42.903	0.091362	-0.042913	0.00011181	NaN	18.135	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443290	+		25381	20517	14462	14463							0.0841495841075357
LPPPITLR	8	Unmodified	_LPPPITLR_					0	0	0			REV__nc|ENSG00000127152|Q9C0K0-2|BCL11B	REV__nc|ENSG00000127152|Q9C0K0-2|BCL11B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7922668457031	2	453.792195	905.569838	0.46554	0.00021126	0.1647	7.4739E-05	0.63023	0.000286	453.7921926435706	50.773	1.9336	50.82	50.344	52.278	0.046577					172	70	4	0	0	0	0.1951	2	11780	11780;11880		43.858	1.555	1	4955300	+		25382	15331	14463	14464	31803;31804	31803					0.11327556036462738
LPPPPGVALPL	11	Unmodified	_LPPPPGVALPL_					0	0	0			REV__ENST00000379789.8_1_10:6274912-6275263:+|nuORF	REV__ENST00000379789.8_1_10:6274912-6275263:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2808837890625	2	535.83406	1069.65357	0.57513	0.00030817	0.62236	0.00033348	1.1975	0.00064166	535.8343014089922	57.573	0.67837	57.573	57.09	57.768	0					34	24	2	0	0	0	0.3241	1	13952	13952		15.847	7.2539	1	281910	+		25383	20540	14464	14465	31805	31805					0.12152667413533891
LPPPPGVALPL	11	Unmodified	_LPPPPGVALPL_					0	0	0			REV__ENST00000379789.8_1_10:6274912-6275263:+|nuORF	REV__ENST00000379789.8_1_10:6274912-6275263:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	535.83406	1069.65357	0.32619	0.00017479	1.0287	0.00055121	1.3549	0.00072599	535.8345568927751	57.485	0.5151	57.468	57.144	57.659	-0.0172	-0.052389	0.0001858	NaN	15.847	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194110	+		25384	20540	14464	14465							0.12152667413533891
LPPPPMQYI	9	Oxidation (M)	_LPPPPM(Oxidation (M))QYI_		LPPPPM(1)QYI		LPPPPM(82)QYI	0	0	1		ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2808837890625	2	536.280803	1070.54705	0.55352	0.00029684	0.041852	2.2444E-05	0.59538	0.00031929	536.2807712615697	57.596	1.6764	57.596	56.823	58.5	0					137	60	3	0	0	0	0.018829	1	13952	13952		81.613	26.84	1	2612700			25385	5199	14465	14466	31806	31806		634			0.014601688566699522
LPPPPMQYI	9	Oxidation (M)	_LPPPPM(Oxidation (M))QYI_		LPPPPM(1)QYI		LPPPPM(74)QYI	0	0	1		ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2799072265625	2	536.280803	1070.54705	0.3758	0.00020153	-0.029844	-1.6005E-05	0.34595	0.00018553	536.2807402241007	57.432	1.5507	57.518	56.836	58.387	0.085621					143	56	4	0	0	0	0.0088261	1	13946	13946		74.423	30.564	1	2346100			25386	5199	14465	14466	31807	31807		634			0.014601688566699522
LPPPPMQYI	9	Oxidation (M)	_LPPPPM(Oxidation (M))QYI_		LPPPPM(1)QYI		LPPPPM(51)QYI	0	0	1		ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.829345703125	2	536.280803	1070.54705	0.37067	0.00019878	0.49334	0.00026457	0.86401	0.00046335	536.2810036568613	57.505	1.2435	57.488	56.894	58.138	-0.017197					105	45	3	0	0	0	0.10111	1	14019	14019		50.855	20.63	1	2375500			25387	5199	14465	14466	31808	31808		634			0.014601688566699522
LPPPPPAK	8	Unmodified	_LPPPPPAK_					0	0	0		nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000127564|Q99640-2|PKMYT1	nc|ENSG00000011451|O95785-3|WIZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.7524719238281	2	408.752539	815.490525	-0.005462	-2.2326E-06	-0.057152	-2.3361E-05	-0.062614	-2.5594E-05	408.75242995943	63.423	0.49228	63.423	63.143	63.635	0					28	17	2	0	0	0	0.2463	1	15724	15724		40.449	6.2612	1	240070			25388	443;3328	14466	14467	31809	31809					0.07539909082322538
LPPPPPAK	8	Unmodified	_LPPPPPAK_					0	0	0		nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1	nc|ENSG00000011451|O95785-3|WIZ;nc|ENSG00000127564|Q99640-2|PKMYT1	nc|ENSG00000011451|O95785-3|WIZ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	408.752539	815.490525	0.14274	5.8345E-05	-0.23764	-9.7134E-05	-0.094896	-3.8789E-05	408.7523743118507	63.301	0.58384	63.397	63.066	63.65	0.095722	-0.01299	-6.9218E-05	NaN	40.449	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174530			25389	443;3328	14466	14467							0.07539909082322538
LPPPPPPHA	9	Unmodified	_LPPPPPPHA_					0	0	0		nc|ENSG00000274211|O14512-2|SOCS7;nc|ENSG00000274211|O14512|SOCS7;ENSG00000274211|ENST00000612932|SOCS7	nc|ENSG00000274211|O14512-2|SOCS7	nc|ENSG00000274211|O14512-2|SOCS7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.32342529296875	2	461.760895	921.507237	0.081707	3.7729E-05	1.0462	0.00048311	1.1279	0.00052084	461.761399649003	46.22	0.54649	46.285	46.008	46.555	0.065048					27	19	2	0	0	0	0.25291	1	10347	10347		9.3474	0	1	368640			25390	8713	14467	14468	31810	31810					0.04334409968271302
LPPPPPPKK	9	Unmodified	_LPPPPPPKK_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant;UTRN|p.I1307Nfs*3|1|0.28|ENSG00000152818|chr6:144487642-144487643|-/A|frameshift_variant	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7997741699219	2	485.807845	969.601138	0.28109	0.00013656	1.2268	0.00059601	1.5079	0.00073256	485.80827310280665	63.252	0.76284	63.252	62.984	63.746	0					55	27	3	0	0	0	0.21303	1	15722	15722		21.747	0	1	712460			25391	5043	14468	14469	31811	31811					0.11512129070558785
LPPPPQLN	8	Unmodified	_LPPPPQLN_					0	0	0			REV__ENSG00000101901|ENST00000394780|ALG13	REV__ENSG00000101901|ENST00000394780|ALG13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.56402587890625	2	438.252903	874.491253	0.40657	0.00017818	-0.25361	-0.00011114	0.15297	6.7038E-05	438.2527952729897	47.606	0.63052	47.649	47.244	47.875	0.04332					59	23	3	0	0	0	0.33245	1	10733	10733		2.0598	0	1	1558700	+		25392	14294	14469	14470	31812	31812					0.04898703731373644
LPPPPTSTFP	10	Unmodified	_LPPPPTSTFP_					0	0	0		ENST00000337619.9_1_7:100803863-100804046:+|nuORF	ENST00000337619.9_1_7:100803863-100804046:+|nuORF	ENST00000337619.9_1_7:100803863-100804046:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3027954101562	2	527.2844	1052.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.557	1	83.54	83.04	84.04	-0.016823								0	0	0	0.34755	1	21850	21850		15.847	1.9411	1				25393	9494	14470	14471	31813	31813					0.030072247287762366
LPPPQLITV	9	Unmodified	_LPPPQLITV_					0	0	0		ENST00000495191.5_1_6:32116492-32118763:-|nuORF	ENST00000495191.5_1_6:32116492-32118763:-|nuORF	ENST00000495191.5_1_6:32116492-32118763:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2702941894531	2	489.305136	976.595718	0.44734	0.00021889	-0.26386	-0.00012911	0.18349	8.978E-05	489.3048867225066	59.158	0.4254	59.143	59.031	59.456	-0.014267					23	14	2	0	0	0	0.23783	1	14475	14475		18.135	0	1	116020			25394	11216	14471	14472	31814	31814					0.1064840548808661
LPPPRALTLA	10	Unmodified	_LPPPRALTLA_					0	0	0		ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1;ENST00000479501.5_1_20:61926459-61943880:+|nuORF	ENSG00000101203|ENST00000358894|COL20A1	ENSG00000101203|ENST00000358894|COL20A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2847900390625	2	524.829309	1047.64407	0.57789	0.00030329	-0.082509	-4.3303E-05	0.49538	0.00025999	524.8288523692464	42.154	0.14301	42.24	42.18	42.323	0.085197					6	4	2	0	0	0	0.31847	1	9157	9157		3.5965	0	1	62009			25395	1675	14472	14473	31815	31815					0.12214899127980061
LPPPRLPELF	10	Unmodified	_LPPPRLPELF_					0	0	0		ENSG00000266826|ENST00000583666|IGBP1C	ENSG00000266826|ENST00000583666|IGBP1C	ENSG00000266826|ENST00000583666|IGBP1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.3272705078125	2	589.850242	1177.68593	0.32532	0.00019189	-0.22248	-0.00013123	0.10285	6.0664E-05	589.849985379532	59.305	0.44373	59.396	59.156	59.6	0.091305					32	15	3	0	0	0	0.30586	1	14372	14372		19.257	6.2145	1	353930			25396	8680	14473	14474	31816	31816					0.10419454816496909
LPPPRPHLAQR	11	Unmodified	_LPPPRPHLAQR_					0	0	0			REV__ENST00000292524.5_1_8:145748479-145748992:+|nuORF	REV__ENST00000292524.5_1_8:145748479-145748992:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8821411132812	2	641.380563	1280.74657	0.54104	0.00034701	-2.1523	-0.0013804	-1.6112	-0.0010334	641.8820132114935	95.724	0.93621	95.721	95.347	96.283	-0.0038147					131	88	3	0	0	0	0.46277	1	25564	25564		2.9952	0	1	160930	+		25397	19762	14474	14475	31817	31817					0.11742984919442279
LPPPRPPLA	9	Unmodified	_LPPPRPPLA_					0	0	0		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2720031738281	2	479.297645	956.580737	0.015916	7.6284E-06	-0.078439	-3.7596E-05	-0.062523	-2.9967E-05	479.2974439036835	46.082	0.7923	46.142	45.844	46.636	0.059834					56	28	3	0	0	0	0.19839	1	10291	10291		21.747	0	1	820410			25398	3006	14475	14476	31818	31818					0.10070958410756248
LPPPRPPLA	9	Unmodified	_LPPPRPPLA_					0	0	0		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2976989746094	2	479.297645	956.580737	0.29624	0.00014198	-0.43372	-0.00020788	-0.13749	-6.5897E-05	479.2973031097263	46.029	0.68653	46.094	45.84	46.527	0.065048					47	24	2	0	0	0	0.17787	1	10337	10337		26.884	0	1	816430			25399	3006	14475	14476	31819	31819					0.10070958410756248
LPPPSLRPPK	10	Unmodified	_LPPPSLRPPK_					0	0	0		ENST00000551269.1_1_12:50037029-50037194:+|nuORF;nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B	ENST00000551269.1_1_12:50037029-50037194:+|nuORF	ENST00000551269.1_1_12:50037029-50037194:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.36083984375	2	551.342584	1100.67061	0.73312	0.0004042	1.7658	0.00097357	2.4989	0.0013778	551.3424498458368	45.92	0.41931	45.92	45.666	46.085	0					21	14	3	0	0	0	0.34325	1	10245	10245		13.906	4.5586	1	165540			25400	2333	14476	14477	31820	31820					0.12430588019310562
LPPPTLRI	8	Unmodified	_LPPPTLRI_					0	0	0		ENSG00000221821|ENST00000408925|C6orf226	ENSG00000221821|ENST00000408925|C6orf226	ENSG00000221821|ENST00000408925|C6orf226	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7923889160156	2	453.792195	905.569838	0.50877	0.00023088	0.19403	8.8048E-05	0.7028	0.00031892	453.7921886266229	50.834	2.0295	50.834	50.267	52.296	0					171	74	4	0	0	0	0.30157	1	11750	11750		30.637	0	1	4991600			25401	8420	14477	14478	31821	31821					0.11327556036474107
LPPPTLRI	8	Unmodified	_LPPPTLRI_					0	0	0		ENSG00000221821|ENST00000408925|C6orf226	ENSG00000221821|ENST00000408925|C6orf226	ENSG00000221821|ENST00000408925|C6orf226	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7922668457031	2	453.792195	905.569838	0.46554	0.00021126	0.1647	7.4739E-05	0.63023	0.000286	453.7921926435706	50.773	1.9336	50.82	50.344	52.278	0.046577					172	70	4	0	0	0	0.23736	1	11737	11737		37.974	0	1	4955300			25402	8420	14477	14478	31822	31822					0.11327556036474107
LPPPTLRI	8	Unmodified	_LPPPTLRI_					0	0	0		ENSG00000221821|ENST00000408925|C6orf226	ENSG00000221821|ENST00000408925|C6orf226	ENSG00000221821|ENST00000408925|C6orf226	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.79229736328125	2	453.792195	905.569838	0.53067	0.00024081	0.12872	5.8413E-05	0.65939	0.00029922	453.79217464963494	50.767	2.182	50.777	50.298	52.48	0.0095634					174	81	4	0	0	0	0.18459	2	11790	11740;11790		45.7	1.9298	1	5365200			25403	8420	14477	14478	31823;31824	31824					0.11327556036474107
LPPPTPSQI	9	Unmodified	_LPPPTPSQI_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7;nc|ENSG00000083223|Q5VYS8-5|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.2713623046875	2	475.271293	948.528032	0.2305	0.00010955	0.30752	0.00014616	0.53802	0.0002557	475.2712812230375	49.46	2.0393	49.46	48.883	50.922	0					155	74	3	0	0	0	0.0042138	3	11405	11362;11405;11492		92.653	27.418	1	1200800			25404	1217	14478	14479	31825;31826;31827	31826					0.051709555572983845
LPPPTPSQI	9	Unmodified	_LPPPTPSQI_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7;nc|ENSG00000083223|Q5VYS8-5|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.27130126953125	2	475.271293	948.528032	0.29823	0.00014174	0.060025	2.8528E-05	0.35826	0.00017027	475.2711976657839	49.593	1.3881	49.637	49.073	50.461	0.044891					127	51	3	0	0	0	0.006189	3	11362	11362;11407;11455		85.272	17.294	1	1181900			25405	1217	14478	14479	31828;31829;31830	31828					0.051709555572983845
LPPPTPSQI	9	Unmodified	_LPPPTPSQI_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7;nc|ENSG00000083223|Q5VYS8-5|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.2713928222656	2	475.271293	948.528032	0.23182	0.00011018	0.16942	8.0523E-05	0.40124	0.0001907	475.2712595032976	49.575	1.4346	49.607	49.014	50.449	0.032043					131	52	3	0	0	0	0.0024096	3	11430	11356;11430;11478		106.94	28.212	1	1222700			25406	1217	14478	14479	31831;31832;31833	31832					0.051709555572983845
LPPPVQTQI	9	Unmodified	_LPPPVQTQI_					0	0	0		ENST00000511107.1_1_5:60241248-60448779:+|nuORF;ENSG00000164182|ENST00000296597|NDUFAF2	ENST00000511107.1_1_5:60241248-60448779:+|nuORF	ENST00000511107.1_1_5:60241248-60448779:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7740173339844	2	496.792392	991.570232	0.52696	0.00026179	-0.77598	-0.0003855	-0.24902	-0.00012371	496.7918378309185	53.39	0.78902	53.39	52.987	53.776	0					50	29	2	0	0	0	0.25066	1	12647	12647		11.64	1.5664	1	354280			25407	5807	14479	14480	31834	31834					0.07410930965670559
LPPQISSII	9	Unmodified	_LPPQISSII_					0	0	0		nc|ENSG00000185684|Q6ZTU2-5|EP400P1;nc|ENSG00000185684|Q6ZTU2-2|EP400P1;nc|ENSG00000185684|Q6ZTU2|EP400P1;nc|ENSG00000185684|Q6ZTU2-6|EP400P1;nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400	nc|ENSG00000185684|Q6ZTU2-5|EP400P1;nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7605285644531	2	484.294768	966.574983	-0.0059568	-2.8849E-06	0.34485	0.00016701	0.33889	0.00016412	484.29492071949454	73.83	0.53883	73.83	73.527	74.066	0					29	18	2	0	0	0	0.24289	1	18821	18821		18.146	2.2992	1	192150			25408	7371;12879	14480	14481	31835	31835					0.09035815108438783
LPPQKLVI	8	Unmodified	_LPPQKLVI_					0	0	0		ENSG00000242419|ENST00000306593|PCDHGC4;nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	ENSG00000242419|ENST00000306593|PCDHGC4	ENSG00000242419|ENST00000306593|PCDHGC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.29022216796875	2	454.302396	906.590239	0.13023	5.9164E-05	0.26377	0.00011983	0.394	0.00017899	454.30248225066543	51.787	0.55766	51.787	51.565	52.123	0					43	20	3	0	0	0	0.32313	1	12078	12078		28.173	8.7342	1	453090			25409	8546	14481	14482	31836	31836					0.13320726696281326
LPPQKLVI	8	Unmodified	_LPPQKLVI_					0	0	0		ENSG00000242419|ENST00000306593|PCDHGC4;nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	ENSG00000242419|ENST00000306593|PCDHGC4	ENSG00000242419|ENST00000306593|PCDHGC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2899475097656	2	454.302396	906.590239	0.011316	5.1407E-06	-0.022778	-1.0348E-05	-0.011462	-5.2072E-06	454.3023232254984	51.829	0.56506	51.828	51.55	52.115	-0.00080872					33	20	2	0	0	0	0.32313	1	12079	12079		28.173	7.302	1	501690			25410	8546	14481	14482	31837	31837					0.13320726696281326
LPPQPALALD	10	Unmodified	_LPPQPALALD_					0	0	0		nc|ENSG00000159640|P12821-2|ACE;ENSG00000159640|ENST00000290866|ACE	nc|ENSG00000159640|P12821-2|ACE	nc|ENSG00000159640|P12821-2|ACE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3316040039062	2	517.797675	1033.5808	0.36538	0.00018919	-4.0634	-0.002104	-3.698	-0.0019148	518.2955375353457	67.884	1.2479	67.962	67.269	68.517	0.078041					53	44	2	0	0	0	0.31165	1	16986	16986		15.847	2.3393	1	332490			25411	5418	14482	14483	31838	31838					0.06534913620089355
LPPRAVQI	8	Unmodified	_LPPRAVQI_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.2818298339844	2	447.281995	892.549437	-0.045808	-2.0489E-05	-0.033309	-1.4898E-05	-0.079117	-3.5387E-05	447.2819278534936	38.649	2.4665	38.649	38.007	40.473	0					183	88	3	0	0	0	0.050494	4	8049	7998;8049;8101;8165		77.984	7.2688	1	684540			25412	2724	14483	14484	31839;31840;31841;31842	31840					0.098863853766602
LPPRAVQI	8	Unmodified	_LPPRAVQI_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.2818603515625	2	447.281995	892.549437	0.15985	7.1496E-05	-0.19691	-8.8075E-05	-0.037066	-1.6579E-05	447.2818228425065	38.559	2.299	38.65	38.042	40.341	0.090881					175	82	3	0	0	0	0.050494	2	8092	7994;8092		77.984	7.2688	1	734590			25413	2724	14483	14484	31843;31844	31844					0.098863853766602
LPPRAVQI	8	Unmodified	_LPPRAVQI_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.2818298339844	2	447.281995	892.549437	0.34327	0.00015354	-0.35882	-0.00016049	-0.015545	-6.9528E-06	447.2817743440436	38.526	2.2754	38.624	37.953	40.228	0.097527					150	81	3	0	0	0	0.065797	2	7968	7968;8068		70.716	7.1527	1	706590			25414	2724	14483	14484	31845;31846	31845					0.098863853766602
LPPRIVCRLGR	11	Unmodified	_LPPRIVCRLGR_					0	0	0			REV__ENSG00000150938|ENST00000280527|CRIM1	REV__ENSG00000150938|ENST00000280527|CRIM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.26422119140625	3	427.26417	1278.77068	0.28837	0.00012321	0.44349	0.00018949	0.73186	0.0003127	427.2643258586268	47.837	3.6874	47.885	47.456	51.143	0.047523					369	136	5	0	0	0	0.46554	1	11255	11255		2.6312	0.54523	1	58472000	+		25415	16516	14484	14485	31847	31847					0.14244502081464816
LPPRMQGPLL	10	Unmodified	_LPPRMQGPLL_					0	0	0			REV__HIVEP1|p.S2208Qfs*19|1|0.2|ENSG00000095951|chr6:12161570-12161570|C/-|frameshift_variant	REV__HIVEP1|p.S2208Qfs*19|1|0.2|ENSG00000095951|chr6:12161570-12161570|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3155517578125	2	561.328619	1120.64269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.739	1	94.737	94.237	95.237	-0.0020142								0	0	0	0.3664	1	25283	25283		7.9102	0.62092	1		+		25416	14108	14485	14486	31848	31848					0.08718941767597244
LPPRPGGL	8	Unmodified	_LPPRPGGL_					0	0	0			REV__ENST00000403268.1_1_22:31058909-31059023:-|nuORF	REV__ENST00000403268.1_1_22:31058909-31059023:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.1903381347656	2	403.747788	805.481023	-0.40142	-0.00016207	0.21186	8.5536E-05	-0.18956	-7.6535E-05	403.7479205716944	31.044	0.60419	31.072	30.869	31.473	0.027946					29	21	2	0	0	0	0.34046	1	5710	5710		14.582	0	1	55972	+		25417	20721	14486	14487	31849	31849					0.0705014079682087
LPPRPGGL	8	Unmodified	_LPPRPGGL_					0	0	0			REV__ENST00000403268.1_1_22:31058909-31059023:-|nuORF	REV__ENST00000403268.1_1_22:31058909-31059023:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	403.747788	805.481023	-0.23797	-9.6078E-05	0.2328	9.3994E-05	-0.0051618	-2.0841E-06	403.74788035084816	31.105	0.58725	31.105	30.889	31.476	0	0.041233	9.5816E-06	NaN	14.582	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93168	+		25418	20721	14486	14487							0.0705014079682087
LPPRPSVL	8	Unmodified	_LPPRPSVL_					0	0	0		ENST00000326282.4_1_19:40022772-40022991:-|nuORF	ENST00000326282.4_1_19:40022772-40022991:-|nuORF	ENST00000326282.4_1_19:40022772-40022991:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.2699890136719	2	439.776545	877.538538	0.06351	2.793E-05	0.080348	3.5335E-05	0.14386	6.3265E-05	439.7764670711894	43.517	0.91559	43.517	43.149	44.065	0					56	33	2	0	0	0	0.31088	1	9728	9728		21.747	3.6117	1	348030			25419	9413	14487	14488	31850	31850					0.09486983002375382
LPPRPTLI	8	Unmodified	_LPPRPTLI_					0	0	0			REV__ENST00000479453.1_1_2:26802129-26802303:+|nuORF	REV__ENST00000479453.1_1_2:26802129-26802303:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.7923889160156	2	453.792195	905.569838	0.53067	0.00024081	0.12872	5.8413E-05	0.65939	0.00029922	453.79217464963494	50.767	2.182	50.777	50.298	52.48	0.0095634					174	81	4	0	0	0	0.1951	1	11837	11837		43.858	2.0187	1	5365200	+		25420	21467	14488	14489	31851	31851					0.11327556036474107
LPPRRILF	8	Unmodified	_LPPRRILF_					0	0	0		nc|ENSG00000132958|Q6XPS3-6|TPTE2;nc|ENSG00000132958|Q6XPS3-4|TPTE2;nc|ENSG00000132958|Q6XPS3-5|TPTE2;nc|ENSG00000132958|Q6XPS3-3|TPTE2;nc|ENSG00000132958|Q6XPS3-2|TPTE2;nc|ENSG00000132958|Q6XPS3-7|TPTE2;ENSG00000132958|ENST00000697147|TPTE2;nc|ENSG00000274391|P56180-4|TPTE;nc|ENSG00000274391|P56180-3|TPTE;nc|ENSG00000274391|P56180-2|TPTE;ENSG00000274391|ENST00000618007|TPTE	nc|ENSG00000132958|Q6XPS3-6|TPTE2	nc|ENSG00000132958|Q6XPS3-6|TPTE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7635498046875	2	506.326737	1010.63892	0.40903	0.0002071	-1.0716	-0.00054258	-0.66258	-0.00033548	506.3259352394073	66.252	1.5235	66.336	65.751	67.274	0.083832					76	54	2	0	0	0	0.32778	1	16583	16583		20.871	7.3633	1	125690			25421	3682	14489	14490	31852	31852					0.13402640056040127
LPPRRILF	8	Unmodified	_LPPRRILF_					0	0	0		nc|ENSG00000132958|Q6XPS3-6|TPTE2;nc|ENSG00000132958|Q6XPS3-4|TPTE2;nc|ENSG00000132958|Q6XPS3-5|TPTE2;nc|ENSG00000132958|Q6XPS3-3|TPTE2;nc|ENSG00000132958|Q6XPS3-2|TPTE2;nc|ENSG00000132958|Q6XPS3-7|TPTE2;ENSG00000132958|ENST00000697147|TPTE2;nc|ENSG00000274391|P56180-4|TPTE;nc|ENSG00000274391|P56180-3|TPTE;nc|ENSG00000274391|P56180-2|TPTE;ENSG00000274391|ENST00000618007|TPTE	nc|ENSG00000132958|Q6XPS3-6|TPTE2	nc|ENSG00000132958|Q6XPS3-6|TPTE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.7635803222656	2	506.326737	1010.63892	0.23429	0.00011863	-0.74366	-0.00037654	-0.50938	-0.00025791	506.32606805287554	66.64	0.61903	66.627	66.25	66.869	-0.013596					39	22	2	0	0	0	0.32778	1	16629	16629		14.582	5.2343	1	93136			25422	3682	14489	14490	31853	31853					0.13402640056040127
LPPTKQARVI	10	Unmodified	_LPPTKQARVI_					0	0	0		ENST00000487318.6_1_2:216928831-216946521:-|nuORF;ENST00000474093.5_1_2:216929948-216946521:-|nuORF;ENST00000497889.5_1_2:216915539-216946464:-|nuORF;ENSG00000115425|ENST00000265322|PECR	ENST00000487318.6_1_2:216928831-216946521:-|nuORF	ENST00000487318.6_1_2:216928831-216946521:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3270263671875	2	561.853316	1121.69208	0.37742	0.00021205	-0.17478	-9.82E-05	0.20264	0.00011385	561.8531399338478	42.155	0.34594	42.246	42.067	42.413	0.091362					22	11	2	0	0	0	0.31986	1	9192	9192		4.897	1.3005	1	290550			25423	2647	14490	14491	31854	31854					0.13609973048028223
LPPTPRLL	8	Unmodified	_LPPTPRLL_					0	0	0		ENST00000395532.8_2_16:28875532-28877416:+|nuORF;ENST00000337120.9_2_16:28877140-28877416:+|nuORF;ENST00000563591.5_1_16:28858025-28877416:+|nuORF	ENST00000395532.8_2_16:28875532-28877416:+|nuORF	ENST00000395532.8_2_16:28875532-28877416:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.79241943359375	2	453.792195	905.569838	0.50877	0.00023088	0.19403	8.8048E-05	0.7028	0.00031892	453.7921886266229	50.834	2.0295	50.834	50.267	52.296	0					171	74	4	0	0	0	0.16041	5	11841	11793;11841;11889;11937;11987		49.933	6.0747	1	4991600			25424	9491	14491	14492	31855;31856;31857;31858;31859	31856					0.11327556036474107
LPPTPRLL	8	Unmodified	_LPPTPRLL_					0	0	0		ENST00000395532.8_2_16:28875532-28877416:+|nuORF;ENST00000337120.9_2_16:28877140-28877416:+|nuORF;ENST00000563591.5_1_16:28858025-28877416:+|nuORF	ENST00000395532.8_2_16:28875532-28877416:+|nuORF	ENST00000395532.8_2_16:28875532-28877416:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7923889160156	2	453.792195	905.569838	0.46554	0.00021126	0.1647	7.4739E-05	0.63023	0.000286	453.7921926435706	50.773	1.9336	50.82	50.344	52.278	0.046577					172	70	4	0	0	0	0.1951	3	11828	11828;11927;11975		43.858	0	1	4955300			25425	9491	14491	14492	31860;31861;31862	31860					0.11327556036474107
LPPTPRLL	8	Unmodified	_LPPTPRLL_					0	0	0		ENST00000395532.8_2_16:28875532-28877416:+|nuORF;ENST00000337120.9_2_16:28877140-28877416:+|nuORF;ENST00000563591.5_1_16:28858025-28877416:+|nuORF	ENST00000395532.8_2_16:28875532-28877416:+|nuORF	ENST00000395532.8_2_16:28875532-28877416:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.7926330566406	2	453.792195	905.569838	0.53067	0.00024081	0.12872	5.8413E-05	0.65939	0.00029922	453.79217464963494	50.767	2.182	50.777	50.298	52.48	0.0095634					174	81	4	0	0	0	0.1951	3	11885	11885;11934;11982		43.858	0	1	5365200			25426	9491	14491	14492	31863;31864;31865	31863					0.11327556036474107
LPPTTAHILS	10	Unmodified	_LPPTTAHILS_					0	0	0		ENSG00000128655|ENST00000286063|PDE11A	ENSG00000128655|ENST00000286063|PDE11A	ENSG00000128655|ENST00000286063|PDE11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3031616210938	2	525.303124	1048.5917	0.63787	0.00033508	-1.3309	-0.00069914	-0.69305	-0.00036406	525.3029738741957	40.311	0.93571	40.411	39.844	40.78	0.099407					72	33	3	0	0	0	0.23848	1	8617	8617		18.146	0	1	533640			25427	3385	14492	14493	31866	31866					0.06934315994362805
LPPVGRRL	8	Unmodified	_LPPVGRRL_					0	0	0		ENSG00000159445|ENST00000368814|THEM4	ENSG00000159445|ENST00000368814|THEM4	ENSG00000159445|ENST00000368814|THEM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.79449462890625	2	454.295436	906.57632	0.25183	0.00011441	-1.5645	-0.00071076	-1.3127	-0.00059636	454.29534378202345	52.964	2.7439	52.964	52.63	55.374	0					251	101	4	0	0	0	0.25055	2	12691	12588;12691		36.466	8.2929	1	7242100			25428	5408	14493	14494	31867;31868	31868					0.11929493987850037
LPPVGRRL	8	Unmodified	_LPPVGRRL_					0	0	0		ENSG00000159445|ENST00000368814|THEM4	ENSG00000159445|ENST00000368814|THEM4	ENSG00000159445|ENST00000368814|THEM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.7945556640625	2	454.295436	906.57632	0.38717	0.00017589	-1.6719	-0.00075955	-1.2848	-0.00058366	454.2952786152763	52.879	3.1282	52.93	52.603	55.731	0.050575					232	116	3	0	0	0	0.25055	3	12613	12613;12663;12711		36.466	8.2929	1	7766000			25429	5408	14493	14494	31869;31870;31871	31869					0.11929493987850037
LPPVGRRL	8	Unmodified	_LPPVGRRL_					0	0	0		ENSG00000159445|ENST00000368814|THEM4	ENSG00000159445|ENST00000368814|THEM4	ENSG00000159445|ENST00000368814|THEM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.79437255859375	2	454.295436	906.57632	0.23328	0.00010598	-1.6837	-0.00076491	-1.4504	-0.00065893	454.2953576360948	53.168	2.6396	53.158	52.631	55.27	-0.0096054					237	97	4	0	0	0	0.25055	2	12676	12630;12676		36.466	8.2929	1	6955500			25430	5408	14493	14494	31872;31873	31873					0.11929493987850037
LPPVIPAL	8	Unmodified	_LPPVIPAL_					0	0	0		ENST00000478443.1_1_17:20910052-20910178:-|nuORF;ENST00000209875.8_1_12:54634211-54634445:-|nuORF	ENST00000478443.1_1_17:20910052-20910178:-|nuORF	ENST00000478443.1_1_17:20910052-20910178:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2704772949219	2	410.270564	818.526576	0.42615	0.00017484	-0.38078	-0.00015622	0.045373	1.8615E-05	410.2703102124737	77.131	1.5934	77.099	76.654	78.247	-0.031334					155	58	5	0	0	0	0.35781	1	20012	20012		24.21	0	1	5541700			25431	8804	14494	14495	31874	31874					0.11005366259178118
LPPVLDPG	8	Unmodified	_LPPVLDPG_					0	0	0		ENST00000283206.8_1_2:112813179-112813299:+|nuORF	ENST00000283206.8_1_2:112813179-112813299:+|nuORF	ENST00000283206.8_1_2:112813179-112813299:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.9156188964844	2	404.234179	806.453805	-0.033172	-1.3409E-05	2.4883	0.0010059	2.4551	0.00099245	404.2351059964928	17.126	0.18428	17.066	16.945	17.129	-0.060429					9	6	2	0	0	0	0.34337	1	1511	1511		5.2307	0	1	11886			25432	9130	14495	14496	31875	31875					0.04283612465769693
LPPVLDPG	8	Unmodified	_LPPVLDPG_					0	0	0		ENST00000283206.8_1_2:112813179-112813299:+|nuORF	ENST00000283206.8_1_2:112813179-112813299:+|nuORF	ENST00000283206.8_1_2:112813179-112813299:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	404.234179	806.453805	-0.3577	-0.00014459	2.9596	0.0011964	2.6019	0.0010518	404.23520829097123	17.395	0.39023	17.278	16.965	17.355	-0.11739	0.10597	9.6994E-05	NaN	5.2307	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19519			25433	9130	14495	14496							0.04283612465769693
LPPVNEYDM	9	Unmodified	_LPPVNEYDM_					0	0	0		ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2476806640625	2	539.2497	1076.48485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.32	1	100.36	99.862	100.86	0.038994								0	0	0	0.25499	1	26810	26810		4.756	0	1				25434	3298	14496	14497	31876	31876					-0.05033602282310312
LPPVTPDLR	9	Unmodified	_LPPVTPDLR_					0	0	0			REV__ENST00000489366.2_1_1:46871719-46874871:+|nuORF	REV__ENST00000489366.2_1_1:46871719-46874871:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.95147705078125	2	504.297842	1006.58113	-0.010404	-5.2468E-06	0.057244	2.8868E-05	0.04684	2.3621E-05	504.2978922246326	39.544	0.56466	39.544	39.294	39.858	0					33	20	2	0	0	0	0.23784	1	8442	8442		19.257	4.4187	1	155460	+		25435	14971	14497	14498	31877	31877					0.07810333339944009
LPPVTPDLR	9	Unmodified	_LPPVTPDLR_					0	0	0			REV__ENST00000489366.2_1_1:46871719-46874871:+|nuORF	REV__ENST00000489366.2_1_1:46871719-46874871:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	504.297842	1006.58113	0.19065	9.6143E-05	-0.15398	-7.7651E-05	0.036668	1.8492E-05	504.2978294651115	39.428	0.44169	39.521	39.278	39.72	0.09267	-0.024357	-0.00018426	NaN	19.257	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190500	+		25436	14971	14497	14498							0.07810333339944009
LPPVTPDLR	9	Unmodified	_LPPVTPDLR_					0	0	0			REV__ENST00000489366.2_1_1:46871719-46874871:+|nuORF	REV__ENST00000489366.2_1_1:46871719-46874871:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	504.297842	1006.58113	0.34549	0.00017423	0.6306	0.00031801	0.97609	0.00049224	504.29761478074175	39.471	0.43948	39.57	39.236	39.676	0.099407	0.025152	0.00060706	NaN	19.257	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183610	+		25437	14971	14497	14498							0.07810333339944009
LPPVVTNPF	9	Unmodified	_LPPVVTNPF_					0	0	0			REV__ENST00000547077.1_1_10:102989368-102992212:+|nuORF	REV__ENST00000547077.1_1_10:102989368-102992212:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.81756591796875	2	492.28166	982.548768	0.50772	0.00024994	-1.057	-0.00052035	-0.54929	-0.00027041	492.28111389901915	64.698	0.61938	64.791	64.471	65.09	0.09288					29	22	2	0	0	0	0.21137	1	16066	16066		24.674	5.3119	1	285490	+		25438	22175	14498	14499	31878	31878					0.056795459369595847
LPPYLRVI	8	Unmodified	_LPPYLRVI_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.79949951171875	2	485.807845	969.601138	0.33874	0.00016456	1.0568	0.00051343	1.3956	0.00067799	485.80815844163766	63.251	0.67886	63.243	62.913	63.592	-0.0085526					53	24	3	0	0	0	0.39956	1	15734	15734		19.439	0	1	723790			25439	2028	14499	14500	31879	31879					0.11512129070570154
LPPYSPVF	8	Unmodified	_LPPYSPVF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.2499694824219	2	460.249829	918.485105	0.084346	3.882E-05	0.47705	0.00021956	0.5614	0.00025838	460.25003623937454	71.098	1.754	71.098	70.378	72.132	0					88	62	2	0	0	0	0.34046	1	18049	18049		14.582	6.6715	1	346590			25440	4044	14500	14501	31880	31880					0.022601854998583804
LPPYSPVF	8	Unmodified	_LPPYSPVF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	460.249829	918.485105	0.089577	4.1228E-05	0.63927	0.00029423	0.72885	0.00033545	460.2502284075486	70.958	1.5752	71.018	70.434	72.009	0.060783	-0.058007	0.00022416	NaN	26.341	98	56	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336290			25441	4044	14500	14501							0.022601854998583804
LPPYSPVF	8	Unmodified	_LPPYSPVF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	460.249829	918.485105	0.26428	0.00012163	0.063363	2.9163E-05	0.32764	0.0001508	460.24984976700813	71.137	1.279	71.113	70.353	71.632	-0.024872	0.036233	-0.00030596	NaN	26.341	71	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393100			25442	4044	14500	14501							0.022601854998583804
LPQALLQDW	9	Unmodified	_LPQALLQDW_					0	0	0		ENST00000586783.5_1_19:14000644-14000983:-|nuORF	ENST00000586783.5_1_19:14000644-14000983:-|nuORF	ENST00000586783.5_1_19:14000644-14000983:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2955932617188	2	542.295299	1082.57605	1.0059	0.00054549	-0.81387	-0.00044136	0.19202	0.00010413	542.2950560200557	47.459	0.52627	47.502	47.244	47.771	0.043324					43	19	3	0	0	0	0.23007	1	10779	10779		19.257	4.4187	1	578160			25443	12124	14501	14502	31881	31881					0.038060294773458736
LPQALLQDW	9	Unmodified	_LPQALLQDW_					0	0	0		ENST00000586783.5_1_19:14000644-14000983:-|nuORF	ENST00000586783.5_1_19:14000644-14000983:-|nuORF	ENST00000586783.5_1_19:14000644-14000983:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	542.295299	1082.57605	0.72995	0.00039585	-0.95976	-0.00052047	-0.22981	-0.00012462	542.2949201423957	47.558	0.58386	47.558	47.214	47.797	0	0.026094	-0.00042243	NaN	19.257	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	804820			25444	12124	14501	14502							0.038060294773458736
LPQALLQDW	9	Unmodified	_LPQALLQDW_					0	0	0		ENST00000586783.5_1_19:14000644-14000983:-|nuORF	ENST00000586783.5_1_19:14000644-14000983:-|nuORF	ENST00000586783.5_1_19:14000644-14000983:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	542.295299	1082.57605	0.67349	0.00036523	-0.22355	-0.00012123	0.44994	0.000244	542.2952279458642	47.488	0.4509	47.536	47.321	47.772	0.04752	0.0036836	0.00037606	NaN	19.257	42	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	747720			25445	12124	14501	14502							0.038060294773458736
LPQAQARRL	9	Unmodified	_LPQAQARRL_					0	0	0		nc|ENSG00000171790|Q499Z3-4|SLFNL1	nc|ENSG00000171790|Q499Z3-4|SLFNL1	nc|ENSG00000171790|Q499Z3-4|SLFNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7579956054688	2	526.819807	1051.62506	0.50763	0.00026743	-1.4881	-0.00078393	-0.98042	-0.00051651	526.8188890369644	38.307	0.38535	38.398	38.209	38.594	0.090881					25	13	3	0	0	0	0.21905	1	7981	7981		23.148	3.7094	1	274350			25446	12836	14502	14503	31882	31882					0.10131362556944623
LPQAQARRL	9	Unmodified	_LPQAQARRL_					0	0	0		nc|ENSG00000171790|Q499Z3-4|SLFNL1	nc|ENSG00000171790|Q499Z3-4|SLFNL1	nc|ENSG00000171790|Q499Z3-4|SLFNL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	526.819807	1051.62506	0.35663	0.00018788	-1.2177	-0.00064151	-0.86109	-0.00045364	526.8190983302464	38.347	0.36429	38.347	38.206	38.571	0	-0.021672	0.00017711	NaN	23.148	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264290			25447	12836	14502	14503							0.10131362556944623
LPQAQHRRVK	10	Unmodified	_LPQAQHRRVK_					0	0	0			REV__nc|ENSG00000173599|P11498-2|PC	REV__nc|ENSG00000173599|P11498-2|PC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.529052734375	3	411.582667	1231.72617	0.0073151	3.0108E-06	-0.39654	-0.00016321	-0.38922	-0.0001602	411.5825039143941	19.087	0.93055	18.97	18.556	19.486	-0.11739					71	32	3	0	0	0	0.32068	1	2142	2142		1.7423	0	1	131950	+		25448	23088	14503	14504	31883	31883					0.1195781425963105
LPQEDIIAH	9	Unmodified	_LPQEDIIAH_					0	0	0			REV__nc|ENSG00000169756|P48059-5|LIMS1;REV__ENST00000422797.5_1_2:109288812-109289630:+|nuORF;REV__nc|ENSG00000256977|P0CW19-2|LIMS3	REV__ENST00000422797.5_1_2:109288812-109289630:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2852783203125	2	518.277106	1034.53966	0.54865	0.00028435	1.5889	0.00082348	2.1375	0.0011078	518.2767418219938	40.223	0.90955	40.316	39.943	40.852	0.092674					101	32	5	0	0	0	0.28128	1	8626	8626		11.64	0	1	2782900	+		25449	23080;20872;19253	14504	14505	31884	31884					0.023771525806296268
LPQEQHRKNL	10	Unmodified	_LPQEQHRKNL_					0	0	0		THE1B_dup9301|chr6:160215256-160215616:-|21.04198475778256|0.4542091183165079|5.53|534.0|24|3|anti-sense	THE1B_dup9301|chr6:160215256-160215616:-|21.04198475778256|0.4542091183165079|5.53|534.0|24|3|anti-sense	THE1B_dup9301|chr6:160215256-160215616:-|21.04198475778256|0.4542091183165079|5.53|534.0|24|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.8985290527344	3	421.570316	1261.68912	-0.11554	-4.8709E-05	0.53349	0.0002249	0.41795	0.0001762	421.57036461456624	16.743	0.75595	16.743	16.461	17.217	0					57	25	3	0	0	0	0.31597	1	1385	1385		12.175	12.175	1	371380			25450	23391	14505	14506	31885	31885					0.06874097923218869
LPQEQHRKNL	10	Unmodified	_LPQEQHRKNL_					0	0	0		THE1B_dup9301|chr6:160215256-160215616:-|21.04198475778256|0.4542091183165079|5.53|534.0|24|3|anti-sense	THE1B_dup9301|chr6:160215256-160215616:-|21.04198475778256|0.4542091183165079|5.53|534.0|24|3|anti-sense	THE1B_dup9301|chr6:160215256-160215616:-|21.04198475778256|0.4542091183165079|5.53|534.0|24|3|anti-sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	421.570316	1261.68912	-0.18802	-7.9264E-05	0.75353	0.00031767	0.56551	0.0002384	421.57038708024606	16.874	0.79429	16.76	16.532	17.326	-0.11434	0.033799	0.0003136	NaN	12.175	86	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395200			25451	23391	14505	14506							0.06874097923218869
LPQEQHRKNL	10	Unmodified	_LPQEQHRKNL_					0	0	0		THE1B_dup9301|chr6:160215256-160215616:-|21.04198475778256|0.4542091183165079|5.53|534.0|24|3|anti-sense	THE1B_dup9301|chr6:160215256-160215616:-|21.04198475778256|0.4542091183165079|5.53|534.0|24|3|anti-sense	THE1B_dup9301|chr6:160215256-160215616:-|21.04198475778256|0.4542091183165079|5.53|534.0|24|3|anti-sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	421.570316	1261.68912	0.056145	2.3669E-05	0.38787	0.00016351	0.44401	0.00018718	421.57030961153754	16.737	0.82678	16.675	16.382	17.209	-0.062534	-0.051176	-0.00014885	NaN	12.175	59	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330850			25452	23391	14505	14506							0.06874097923218869
LPQEQKAKI	9	Unmodified	_LPQEQKAKI_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.8169555664062	2	527.816399	1053.61824	0.46692	0.00024645	0.5676	0.00029959	1.0345	0.00054604	527.8168905082713	21.912	0.62606	21.812	21.471	22.097	-0.10034					32	22	3	0	0	0	0.22215	1	2968	2968		20.415	5.1661	1	176850			25453	620	14506	14507	31886	31886					0.09358004885712035
LPQGIVREL	9	Unmodified	_LPQGIVREL_					0	0	0		ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.81103515625	2	512.811116	1023.60768	0.47538	0.00024378	-0.48538	-0.00024891	-0.010002	-5.1293E-06	512.8108555364724	51.308	1.1773	51.308	50.896	52.074	0					110	43	4	0	0	0	0.0091837	2	11974	11930;11974		80.676	15.441	1	6459800			25454	8338	14507	14508	31887;31888	31888					0.09682022231265819
LPQGIVREL	9	Unmodified	_LPQGIVREL_					0	0	0		ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.81103515625	2	512.811116	1023.60768	0.28956	0.00014849	-0.29402	-0.00015078	-0.0044663	-2.2904E-06	512.8109085563283	51.269	1.101	51.316	51.011	52.112	0.046574					103	40	5	0	0	0	0.0032746	2	11973	11926;11973		100.09	30.986	1	6513200			25455	8338	14507	14508	31889;31890	31890					0.09682022231265819
LPQGIVREL	9	Unmodified	_LPQGIVREL_					0	0	0		ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.8112182617188	2	512.811116	1023.60768	0.301	0.00015435	-0.27216	-0.00013957	0.028836	1.4787E-05	512.8109514568623	51.355	1.133	51.365	50.937	52.07	0.0095634					113	42	4	0	0	0	0.0091837	2	11940	11940;11987		80.676	24.499	1	6238100			25456	8338	14507	14508	31891;31892	31891					0.09682022231265819
LPQGPLGTSF	10	Unmodified	_LPQGPLGTSF_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7744140625	2	508.7742	1015.53385	0.57251	0.00029128	0.095628	4.8653E-05	0.66814	0.00033993	508.77414777134754	65.863	0.78014	65.863	65.458	66.239	0					65	27	3	0	0	0	0.012782	1	16457	16457		79.596	24.823	1	565730			25457	8673	14508	14509	31893	31893					0.026700540689603258
LPQGPLGTSF	10	Unmodified	_LPQGPLGTSF_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7744140625	2	508.7742	1015.53385	0.42592	0.0002167	0.2469	0.00012562	0.67282	0.00034231	508.7742873365856	65.725	0.6778	65.814	65.491	66.169	0.088875					56	24	3	0	0	0	0.012782	1	16389	16389		79.596	33.575	1	597670			25458	8673	14508	14509	31894	31894					0.026700540689603258
LPQGPLGTSF	10	Unmodified	_LPQGPLGTSF_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7742614746094	2	508.7742	1015.53385	0.42298	0.0002152	0.088073	4.4809E-05	0.51105	0.00026001	508.77423875512284	65.789	0.69125	65.778	65.478	66.169	-0.011337					54	24	3	0	0	0	0.012782	1	16428	16428		79.596	33.575	1	576250			25459	8673	14508	14509	31895	31895					0.026700540689603258
LPQHHPDRPCK	11	Unmodified	_LPQHHPDRPCK_					0	0	0			REV__ENST00000249883.9_1_3:134075497-134075785:-|nuORF	REV__ENST00000249883.9_1_3:134075497-134075785:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.2737121582031	3	443.227784	1326.66152	0.3485	0.00015446	-0.92531	-0.00041012	-0.57681	-0.00025566	443.2274359765404	35.752	0.19116	35.752	35.665	35.856	0					9	6	2	0	0	0	0.33146	1	7198	7198		4.1166	0	1	75814	+		25460	19516	14509	14510	31896	31896					0.011258713913093743
LPQHQRGVF	9	Unmodified	_LPQHQRGVF_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8142700195312	2	541.298707	1080.58286	0.35471	0.00019201	0.70143	0.00037968	1.0561	0.00057169	541.2990590642648	29.545	0.52391	29.558	29.274	29.798	0.013475					30	17	2	0	0	0	0.24739	1	5289	5289		13.508	4.9146	1	129590			25461	3829	14510	14511	31897	31897					0.04579387148555725
LPQHQRGVF	9	Unmodified	_LPQHQRGVF_					0	0	0		nc|ENSG00000134909|A7KAX9-2|ARHGAP32;nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.298707	1080.58286	0.66703	0.00036106	0.13741	7.438E-05	0.80444	0.00043544	541.2988425554215	29.484	0.44164	29.484	29.244	29.686	0	-0.017633	-0.00031861	NaN	13.508	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133100			25462	3829	14510	14511							0.04579387148555725
LPQIAAKI	8	Unmodified	_LPQIAAKI_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.2644348144531	2	427.278921	852.543289	0.19069	8.1478E-05	-0.77701	-0.000332	-0.58632	-0.00025052	427.2783461419216	47.975	0.60292	47.975	47.877	48.48	0					33	20	2	0	0	0	0.1951	3	10967	10967;11018;11065		43.858	18.459	1	1182400			25463	3651	14511	14512	31898;31899;31900	31898					0.11111867145120868
LPQIAAKI	8	Unmodified	_LPQIAAKI_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.2643737792969	2	427.278921	852.543289	0.32112	0.00013721	-0.79874	-0.00034129	-0.47762	-0.00020408	427.27833350328507	48.01	0.55315	48.058	47.919	48.472	0.04752					47	20	3	0	0	0	0.071344	3	10994	10945;10994;11045		68.081	31.954	1	1137100			25464	3651	14511	14512	31901;31902;31903	31902					0.11111867145120868
LPQIAAKI	8	Unmodified	_LPQIAAKI_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.2643737792969	2	427.278921	852.543289	0.18827	8.0444E-05	-0.88953	-0.00038008	-0.70126	-0.00029963	427.2784111155523	48.076	0.55508	48.12	47.875	48.43	0.04332					45	20	3	0	0	0	0.071344	4	10981	10897;10941;10981;11031		68.081	32.037	1	991580			25465	3651	14511	14512	31904;31905;31906;31907	31906					0.11111867145120868
LPQILLQL	8	Unmodified	_LPQILLQL_					0	0	0		ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	ENSG00000015479|ENST00000394805|MATR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.3074951171875	2	469.307678	936.600803	-0.25798	-0.00012107	0.24236	0.00011374	-0.015622	-7.3314E-06	469.3076543457125	61.579	1.4291	61.676	61.116	62.546	0.096985					125	52	4	0	0	0	0.35375	1	15259	15259		24.674	0	1	4552800			25466	481	14512	14513	31908	31908					0.12996709350716174
LPQKLLLE	8	Unmodified	_LPQKLLLE_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1;ENST00000461023.5_1_16:343426-396314:-|nuORF	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.29254150390625	2	477.305136	952.595718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.15	1	48.15	47.65	48.65	0								0	0	0	0.33432	1	10994	10994		21.747	0	1				25467	1810	14513	14514	31909	31909					0.11752405488084605
LPQKLLLE	8	Unmodified	_LPQKLLLE_					0	0	0		nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1;ENST00000461023.5_1_16:343426-396314:-|nuORF	nc|ENSG00000103126|O15169-2|AXIN1	nc|ENSG00000103126|O15169-2|AXIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.29266357421875	2	477.305136	952.595718	0.48195	0.00023004	-1.7463	-0.00083352	-1.2643	-0.00060348	477.30473873704176	48.059	0.1539	48.103	48.037	48.191	0.04332					10	5	2	0	0	0	0.27124	1	10972	10972		34.102	8.7031	1	229350			25468	1810	14513	14514	31910	31910					0.11752405488084605
LPQKREVLA	9	Unmodified	_LPQKREVLA_					0	0	0			REV__nc|ENSG00000141030|Q9UNS2-2|COPS3	REV__nc|ENSG00000141030|Q9UNS2-2|COPS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3133544921875	2	527.324391	1052.63423	0.60629	0.00031971	1.0448	0.00055092	1.651	0.00087064	527.3249084779609	53.788	0.127	53.779	53.688	53.815	-0.0096054					5	4	2	0	0	0	0.30623	1	12712	12712		7.9102	0	1	154520	+		25469	16063	14514	14515	31911	31911					0.11001711122617053
LPQLGLFHL	9	Unmodified	_LPQLGLFHL_					0	0	0			REV__ENSG00000183921|ENST00000602312|SDR42E2	REV__ENSG00000183921|ENST00000602312|SDR42E2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.8007202148438	2	519.310752	1036.60695	0.20249	0.00010516	-2.9105	-0.0015114	-2.708	-0.0014063	519.3097486380951	45.793	0.31256	45.853	45.703	46.015	0.059834					18	10	3	0	0	0	0.18943	1	10248	10248		30.225	6.435	1	420830	+		25470	18294	14515	14516	31912	31912					0.09011227582209358
LPQLGLFHL	9	Unmodified	_LPQLGLFHL_					0	0	0			REV__ENSG00000183921|ENST00000602312|SDR42E2	REV__ENSG00000183921|ENST00000602312|SDR42E2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.80078125	2	519.310752	1036.60695	0.55206	0.00028669	-3.0449	-0.0015813	-2.4929	-0.0012946	519.8102632491609	45.836	0.31769	45.901	45.753	46.07	0.065052					17	10	3	0	0	0	0.1659	1	10269	10269		36.044	4.0067	1	359350	+		25471	18294	14515	14516	31913	31913					0.09011227582209358
LPQLKFRNYKF	11	Unmodified	_LPQLKFRNYKF_					0	0	0		ENST00000302182.7_1_17:16285921-16286005:+|nuORF	ENST00000302182.7_1_17:16285921-16286005:+|nuORF	ENST00000302182.7_1_17:16285921-16286005:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80029296875	3	485.281995	1452.82415	0.26504	0.00012862	-0.39689	-0.0001926	-0.13185	-6.3984E-05	485.6161015452534	51.839	0.65877	51.89	51.651	52.309	0.050575					51	23	3	0	0	0	0.33277	1	12225	12225		0.094841	0.094841	1	350240			25472	9231	14516	14517	31914	31914					0.11585578064978108
LPQLTGPVL	9	Unmodified	_LPQLTGPVL_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21867883-21868626:-|nuORF;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2893371582031	2	469.289485	936.564418	0.089711	4.2101E-05	-0.3867	-0.00018147	-0.29699	-0.00013937	469.289234487971	71.371	0.39307	71.371	71.098	71.491	0					24	13	2	0	0	0	0.11461	2	18160	18109;18160		36.127	15.673	1	530420			25473	455;3253	14517	14518	31915;31916	31916					0.09359832453992567
LPQLTGPVL	9	Unmodified	_LPQLTGPVL_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21867883-21868626:-|nuORF;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.2892150878906	2	469.289485	936.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.29	1	71.351	70.851	71.851	0.060783								0	0	0	0.1027	1	18106	18106		45.7	21.026	1				25474	455;3253	14517	14518	31917	31917					0.09359832453992567
LPQLTGPVL	9	Unmodified	_LPQLTGPVL_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21867883-21868626:-|nuORF;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.2895202636719	2	469.289485	936.564418	0.30711	0.00014413	-0.37634	-0.00017661	-0.069223	-3.2485E-05	469.28917978961215	71.832	1.1783	71.804	71.128	72.306	-0.027275					77	42	3	0	0	0	0.18803	1	18179	18179		25.399	6.1423	1	922160			25475	455;3253	14517	14518	31918	31918					0.09359832453992567
LPQLYYSRPK	10	Unmodified	_LPQLYYSRPK_					0	0	0			REV__nc|ENSG00000144893|Q86YW9-4|MED12L	REV__nc|ENSG00000144893|Q86YW9-4|MED12L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.240478515625	3	422.239796	1263.69756	-0.19858	-8.3848E-05	1.3468	0.00056868	1.1482	0.00048483	422.2406108211074	26.081	0.96043	26.081	25.769	26.729	0					103	33	4	0	0	0	0.33753	1	4222	4222		14.957	2.7296	1	980210	+		25476	16269	14518	14519	31919	31919					0.07625651839816783
LPQNPRKP	8	Unmodified	_LPQNPRKP_					0	0	0			REV__ENST00000512891.1_1_5:177593058-177593307:+|nuORF	REV__ENST00000512891.1_1_5:177593058-177593307:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.2823486328125	2	475.282526	948.550499	0.096456	4.5844E-05	0.071469	3.3968E-05	0.16793	7.9812E-05	475.28244449806465	27.287	0.60517	27.275	27.07	27.675	-0.01156					44	20	3	0	0	0	0.42758	1	4607	4607		13.508	1.8676	1	398690	+		25477	21818	14519	14520	31920	31920					0.07416599745567964
LPQPPVPQ	8	Unmodified	_LPQPPVPQ_					0	0	0			REV__ENST00000330233.11_1_14:105953543-105954514:+|nuORF	REV__ENST00000330233.11_1_14:105953543-105954514:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.56396484375	2	438.252903	874.491253	0.2923	0.0001281	-0.52884	-0.00023177	-0.23654	-0.00010366	438.25279368837533	47.648	0.85684	47.695	47.137	47.994	0.047523					67	31	3	0	0	0	0.31934	1	10785	10785		12.532	0	1	1261200	+		25478	20033	14520	14521	31921	31921					0.04898703731373644
LPQRPLSL	8	Unmodified	_LPQRPLSL_					0	0	0			REV__ENST00000274712.7_1_5:140080440-140083534:+|nuORF	REV__ENST00000274712.7_1_5:140080440-140083534:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.2770080566406	2	462.287277	922.560001	0.30882	0.00014276	0.055872	2.5829E-05	0.36469	0.00016859	462.2873380696976	47.269	0.49377	47.269	47.084	47.578	0					29	17	3	0	0	0	0.39956	1	10698	10698		19.439	0	1	194210	+		25479	19688	14521	14522	31922	31922					0.09562368031083679
LPQRPLSL	8	Unmodified	_LPQRPLSL_					0	0	0			REV__ENST00000274712.7_1_5:140080440-140083534:+|nuORF	REV__ENST00000274712.7_1_5:140080440-140083534:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	462.287277	922.560001	0.30882	0.00014276	0.055872	2.5829E-05	0.36469	0.00016859	462.2873380696976	47.269	0.49377	47.269	47.084	47.578	0	0.0004584	-0.00015482	NaN	19.439	29	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194210	+		25480	19688	14521	14522							0.09562368031083679
LPQRPLSL	8	Unmodified	_LPQRPLSL_					0	0	0			REV__ENST00000274712.7_1_5:140080440-140083534:+|nuORF	REV__ENST00000274712.7_1_5:140080440-140083534:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	462.287277	922.560001	0.016408	7.5852E-06	0.31161	0.00014405	0.32801	0.00015164	462.2874358096455	47.216	0.45549	47.268	47.088	47.544	0.05257	-0.0004584	8.1629E-05	NaN	19.439	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199600	+		25481	19688	14521	14522							0.09562368031083679
LPQSDRSAL	9	Unmodified	_LPQSDRSAL_					0	0	0			REV__ENSG00000178395|ENST00000366875|CCDC185	REV__ENSG00000178395|ENST00000366875|CCDC185	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7796630859375	2	493.766906	985.519259	0.27731	0.00013693	0.57643	0.00028462	0.85373	0.00042155	493.7673100196986	33.075	0.58891	33.075	32.837	33.426	0					40	20	3	0	0	0	0.17787	1	6363	6363		26.884	1.4843	1	304620	+		25482	18033	14522	14523	31923	31923					0.025919819208070294
LPQSDRSAL	9	Unmodified	_LPQSDRSAL_					0	0	0			REV__ENSG00000178395|ENST00000366875|CCDC185	REV__ENSG00000178395|ENST00000366875|CCDC185	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7795104980469	2	493.766906	985.519259	0.30887	0.00015251	0.062952	3.1083E-05	0.37182	0.00018359	493.7671854293058	32.959	0.46699	33.013	32.791	33.258	0.054375					36	16	3	0	0	0	0.17787	1	6322	6322		26.884	1.4843	1	375370	+		25483	18033	14522	14523	31924	31924					0.025919819208070294
LPQSFGFI	8	Unmodified	_LPQSFGFI_					0	0	0		ENST00000439871.1_1_2:218925303-218925771:-|nuORF;ENSG00000180871|ENST00000318507|CXCR2	ENST00000439871.1_1_2:218925303-218925771:-|nuORF	ENST00000439871.1_1_2:218925303-218925771:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.74688720703125	2	454.747453	907.480354	0.16633	7.5639E-05	-1.7227	-0.00078339	-1.5564	-0.00070775	454.74655205274036	70.327	0.38244	70.327	70.157	70.54	0					19	13	2	0	0	0	0.33441	1	17839	17839		26.884	0	1	83548			25484	7208	14523	14524	31925	31925					0.022913013570928342
LPQSFGFI	8	Unmodified	_LPQSFGFI_					0	0	0		ENST00000439871.1_1_2:218925303-218925771:-|nuORF;ENSG00000180871|ENST00000318507|CXCR2	ENST00000439871.1_1_2:218925303-218925771:-|nuORF	ENST00000439871.1_1_2:218925303-218925771:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	454.747453	907.480354	0.19818	9.0121E-05	-2.1861	-0.00099412	-1.9879	-0.00090399	454.7462014267803	70.3	0.72275	70.367	70.187	70.909	0.066048	0.025041	-0.00026581	NaN	26.884	26	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105680			25485	7208	14523	14524							0.022913013570928342
LPQSFGFI	8	Unmodified	_LPQSFGFI_					0	0	0		ENST00000439871.1_1_2:218925303-218925771:-|nuORF;ENSG00000180871|ENST00000318507|CXCR2	ENST00000439871.1_1_2:218925303-218925771:-|nuORF	ENST00000439871.1_1_2:218925303-218925771:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	454.747453	907.480354	0.19889	9.0443E-05	-1.9073	-0.00086734	-1.7084	-0.00077689	454.7461964072133	70.355	0.6961	70.33	70.16	70.856	-0.024864	-0.010993	-1.225E-05	NaN	26.884	30	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94222			25486	7208	14523	14524							0.022913013570928342
LPQSLTHQ	8	Unmodified	_LPQSLTHQ_					0	0	0			REV__ENSG00000178567|ENST00000322716|EPM2AIP1	REV__ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.2494201660156	2	462.250892	922.48723	0.18971	8.7694E-05	-2.167	-0.0010017	-1.9773	-0.00091401	462.24909133421534	87.069	0.97985	87.069	86.785	87.765	0					74	42	3	0	0	0	0.41758	1	22959	22959		16.942	0	1	379510	+		25487	18041	14524	14525	31926	31926					0.022886142376592034
LPQSLTKFP	9	Unmodified	_LPQSLTKFP_					0	0	0			REV__ENST00000397323.8_2_8:30423851-30428244:+|nuORF	REV__ENST00000397323.8_2_8:30423851-30428244:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2791748046875	2	515.800217	1029.58588	0.58909	0.00030385	-0.94075	-0.00048524	-0.35165	-0.00018138	515.7986597535429	32.204	0.55474	32.252	32.028	32.583	0.048374					42	19	3	0	0	0	0.24913	1	6050	6050		12.532	0	1	192800	+		25488	20670	14525	14526	31927	31927					0.07227217482704873
LPQSSIRVR	9	Unmodified	_LPQSSIRVR_					0	0	0			REV__ENST00000550165.5_1_12:49960554-49961530:-|nuORF	REV__ENST00000550165.5_1_12:49960554-49961530:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3197631835938	2	528.31964	1054.62473	0.43049	0.00022744	-0.011617	-6.1374E-06	0.41888	0.0002213	528.3195713188496	26.934	0.8878	26.934	26.673	27.561	0					78	30	3	0	0	0	0.31417	1	4588	4588		6.7232	1.9672	1	697200	+		25489	22201	14526	14527	31928	31928					0.09959942837076596
LPQTLPEI	8	Unmodified	_LPQTLPEI_					0	0	0		ENSG00000104969|ENST00000221566|SGTA	ENSG00000104969|ENST00000221566|SGTA	ENSG00000104969|ENST00000221566|SGTA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.76568603515625	2	455.765843	909.517133	-0.1306	-5.9524E-05	0.085891	3.9146E-05	-0.044711	-2.0378E-05	455.76579625001403	65.222	0.75017	65.222	64.858	65.608	0					74	26	4	0	0	0	0.063256	2	16266	16266;16317		71.922	10.565	1	1327300			25490	1940	14527	14528	31929;31930	31929					0.058755531829774554
LPQTLPEI	8	Unmodified	_LPQTLPEI_					0	0	0		ENSG00000104969|ENST00000221566|SGTA	ENSG00000104969|ENST00000221566|SGTA	ENSG00000104969|ENST00000221566|SGTA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.7658386230469	2	455.765843	909.517133	-0.17673	-8.0546E-05	0.2825	0.00012875	0.10577	4.8209E-05	455.76586699228017	65.087	0.83306	65.176	64.844	65.677	0.088882					70	30	3	0	0	0	0.077335	1	16229	16229		65.235	12.967	1	1196700			25491	1940	14527	14528	31931	31931					0.058755531829774554
LPQTLPEI	8	Unmodified	_LPQTLPEI_					0	0	0		ENSG00000104969|ENST00000221566|SGTA	ENSG00000104969|ENST00000221566|SGTA	ENSG00000104969|ENST00000221566|SGTA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.76580810546875	2	455.765843	909.517133	-0.12877	-5.8688E-05	0.2539	0.00011572	0.12513	5.7029E-05	455.76578468423776	65.225	0.80788	65.214	64.86	65.668	-0.011337					81	29	4	0	0	0	0.04227	2	16260	16260;16307		81.89	10.757	1	1406500			25492	1940	14527	14528	31932;31933	31932					0.058755531829774554
LPQTRRISL	9	Unmodified	_LPQTRRISL_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3352661132812	2	542.33529	1082.65603	-0.94813	-0.0005142	-0.012166	-6.5979E-06	-0.9603	-0.0005208	542.3351892719865	34.594	0.54845	34.669	34.414	34.963	0.075306					53	19	3	0	0	0	0.14786	2	6835	6835;6883		31.268	12.895	1	515910			25493	8091	14528	14529	31934;31935	31934					0.1180051587118669
LPQTRRISL	9	Unmodified	_LPQTRRISL_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3348388671875	2	542.33529	1082.65603	-0.065271	-3.5399E-05	-0.94348	-0.00051168	-1.0088	-0.00054708	542.3347063391462	34.562	0.66674	34.64	34.308	34.975	0.077381					61	23	4	0	0	0	0.07944	1	6816	6816		41.956	17.935	1	500990			25494	8091	14528	14529	31936	31936					0.1180051587118669
LPQTRTLA	8	Unmodified	_LPQTRTLA_					0	0	0			REV__ENST00000328453.9_1_7:99809411-99820265:-|nuORF	REV__ENST00000328453.9_1_7:99809411-99820265:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.26910400390625	2	450.269084	898.523616	0.29824	0.00013429	-0.58414	-0.00026302	-0.2859	-0.00012873	450.2690698104063	30.115	1.7525	30.115	29.801	31.553	0					184	62	5	0	0	0	0.20518	1	5651	5651		42.095	9.7891	1	19497000	+		25495	20017	14529	14530	31937	31937					0.07029491134369437
LPQVSAGKQGF	11	Unmodified	_LPQVSAGKQGF_					0	0	0		nc|ENSG00000060237|Q9H4A3-6|WNK1	nc|ENSG00000060237|Q9H4A3-6|WNK1	nc|ENSG00000060237|Q9H4A3-6|WNK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.3115234375	2	566.31148	1130.60841	0.52327	0.00029633	0.10138	5.7415E-05	0.62465	0.00035375	566.3115816944913	47.927	1.0665	47.927	47.682	48.749	0					113	37	4	0	0	0	0.082753	1	11021	11021		43.772	1.8168	1	17096000			25496	12578	14530	14531	31938	31938					0.04832816880343671
LPQWAAPL	8	Unmodified	_LPQWAAPL_					0	0	0			REV__ENST00000447459.6_3_16:27840143-27856316:-|nuORF	REV__ENST00000447459.6_3_16:27840143-27856316:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.2538757324219	2	448.255446	894.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87	1	86.995	86.495	87.495	-0.0056229								0	0	0	0.36961	1	22905	22905		5.7604	0	1		+		25497	21089	14531	14532	31939	31939					0.04487007593979797
LPQWGDRKTK	10	Unmodified	_LPQWGDRKTK_					0	0	0		ENST00000524672.2_1_11:67946983-67947076:-|nuORF	ENST00000524672.2_1_11:67946983-67947076:-|nuORF	ENST00000524672.2_1_11:67946983-67947076:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.56622314453125	3	410.231412	1227.67241	-0.45807	-0.00018792	1.1713	0.00048049	0.71321	0.00029258	410.2318677865062	103.63	0.39386	103.63	103.56	103.95	0					78	55	2	0	0	0	0.32068	1	27571	27571		0.62683	0	1	5401600			25498	11523	14532	14533	31940	31940					0.0676759703726475
LPQWLLKR	8	Unmodified	_LPQWLLKR_					0	0	0		ENST00000373465.2_1_X:46278605-46278842:-|nuORF	ENST00000373465.2_1_X:46278605-46278842:-|nuORF	ENST00000373465.2_1_X:46278605-46278842:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7841796875	2	527.332019	1052.64948	0.63358	0.00033411	-3.835	-0.0020223	-3.2014	-0.0016882	527.330049939197	40.205	0.50063	40.304	40.062	40.563	0.099407					23	17	2	0	0	0	0.34092	1	8528	8528		4.756	0	1	196160			25499	9866	14533	14534	31941	31941					0.12526622710470292
LPRAAQAVVRR	11	Unmodified	_LPRAAQAVVRR_					0	0	0		ENST00000498611.5_1_22:50657979-50682900:-|nuORF	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	ENST00000498611.5_1_22:50657979-50682900:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.8861083984375	2	618.886013	1235.75747	0.12406	7.6779E-05	-0.17608	-0.00010898	-0.052022	-3.2196E-05	618.8858832126402	25.505	0.47562	25.505	25.239	25.714	0					39	15	3	0	0	0	0.46277	1	4096	4096		2.9952	0	1	229920			25500	11256	14534	14535	31942	31942					0.1490238729372777
LPRAGGPLGL	10	Unmodified	_LPRAGGPLGL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7926025390625	2	475.792727	949.5709	0.80514	0.00038308	-1.2157	-0.00057841	-0.41054	-0.00019533	475.79191017200634	50.599	0.92823	50.62	50.177	51.106	0.020691					62	34	3	0	0	0	0.062954	1	11752	11752		56.177	16.22	1	430750			25501	7211	14535	14536	31943	31943					0.09409770405375184
LPRAGGPLGL	10	Unmodified	_LPRAGGPLGL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	475.792727	949.5709	0.53633	0.00025518	-1.1999	-0.00057093	-0.66362	-0.00031574	475.7919616573572	50.558	1.0033	50.558	50.077	51.081	0	-0.036846	3.4551E-05	NaN	56.177	53	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	429100			25502	7211	14535	14536							0.09409770405375184
LPRAGGPLGL	10	Unmodified	_LPRAGGPLGL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	475.792727	949.5709	0.77413	0.00036832	-1.2948	-0.00061606	-0.52068	-0.00024773	475.79193694178934	50.562	1.057	50.607	50.084	51.141	0.044891	0.011891	-5.5711E-05	NaN	56.177	56	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	423370			25503	7211	14535	14536							0.09409770405375184
LPRAGLEL	8	Unmodified	_LPRAGLEL_					0	0	0		nc|ENSG00000141298|Q76I76|SSH2;ENSG00000141298|ENST00000540801|SSH2	nc|ENSG00000141298|Q76I76|SSH2	nc|ENSG00000141298|Q76I76|SSH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7661437988281	2	434.766178	867.517802	0.18965	8.2453E-05	0.11104	4.8278E-05	0.30069	0.00013073	434.76614530470704	47.323	0.66026	47.323	47.053	47.714	0					49	23	4	0	0	0	0.25352	1	10748	10748		36.127	5.4905	1	635330			25504	4365	14536	14537	31944	31944					0.07874392622716186
LPRAGPLL	8	Unmodified	_LPRAGPLL_					0	0	0			REV__ENST00000299821.15_1_22:50957117-50957694:+|nuORF	REV__ENST00000299821.15_1_22:50957117-50957694:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.7703552246094	2	418.771263	835.527973	-1.3392	-0.00056081	0.16527	6.9209E-05	-1.1739	-0.00049161	418.7711794065434	34.735	1.0706	34.81	34.383	35.454	0.075306					81	38	3	0	0	0	0.20019	1	6860	6860		42.968	0	1	529180	+		25505	19812	14537	14538	31945	31945					0.10363000347956586
LPRAGPLL	8	Unmodified	_LPRAGPLL_					0	0	0			REV__ENST00000299821.15_1_22:50957117-50957694:+|nuORF	REV__ENST00000299821.15_1_22:50957117-50957694:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	418.771263	835.527973	-0.73354	-0.00030719	-0.37399	-0.00015662	-1.1075	-0.0004638	418.771017035085	34.67	0.99679	34.747	34.444	35.441	0.077377	-0.041011	-0.00027339	NaN	42.968	85	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	636900	+		25506	19812	14537	14538							0.10363000347956586
LPRAKIITV	9	Unmodified	_LPRAKIITV_					0	0	0		ENSG00000166507|ENST00000309979|NDST2	ENSG00000166507|ENST00000309979|NDST2	ENSG00000166507|ENST00000309979|NDST2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.82806396484375	2	505.839677	1009.6648	-0.060136	-3.0419E-05	1.5049	0.00076122	1.4447	0.0007308	505.8403335722747	39.089	0.42546	39.089	38.816	39.242	0					25	14	2	0	0	0	0.21389	1	8171	8171		25.399	6.1423	1	319570			25507	6087	14538	14539	31946	31946					0.16035489507657985
LPRAKIITV	9	Unmodified	_LPRAKIITV_					0	0	0		ENSG00000166507|ENST00000309979|NDST2	ENSG00000166507|ENST00000309979|NDST2	ENSG00000166507|ENST00000309979|NDST2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	505.839677	1009.6648	0.16434	8.313E-05	1.3089	0.00066208	1.4732	0.00074521	505.8401524501074	39.014	0.71174	39.107	38.836	39.548	0.09267	0.036586	1.0366E-05	NaN	25.399	32	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259340			25508	6087	14538	14539							0.16035489507657985
LPRATVYKPQN	11	Unmodified	_LPRATVYKPQN_					0	0	0		ENST00000564629.1_1_16:31469835-31469943:-|nuORF	ENST00000564629.1_1_16:31469835-31469943:-|nuORF	ENST00000564629.1_1_16:31469835-31469943:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.91046142578125	3	429.5787	1285.71427	-0.33281	-0.00014297	0.68853	0.00029578	0.35572	0.00015281	429.5791951476371	31.307	0.43557	31.349	31.052	31.487	0.042366					23	15	2	0	0	0	0.33277	1	5850	5850		3.0723	0.22898	1	170480			25509	11952	14539	14540	31947	31947					0.08284152725832428
LPRAVGTQTL	10	Unmodified	_LPRAVGTQTL_					0	0	0		ENST00000560260.5_1_15:64422114-64427054:+|nuORF;nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1	ENST00000560260.5_1_15:64422114-64427054:+|nuORF	ENST00000560260.5_1_15:64422114-64427054:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3143920898438	2	528.314023	1054.61349	0.22896	0.00012096	0.54996	0.00029055	0.77891	0.00041151	528.3144332320379	39.782	1.403	39.782	38.931	40.334	0					130	50	4	0	0	0	0.0027997	4	8389	8344;8389;8437;8489		104.48	45.116	1	2686400			25510	543	14540	14541	31948;31949;31950;31951	31949					0.08837120742964544
LPRAVGTQTL	10	Unmodified	_LPRAVGTQTL_					0	0	0		ENST00000560260.5_1_15:64422114-64427054:+|nuORF;nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1	ENST00000560260.5_1_15:64422114-64427054:+|nuORF	ENST00000560260.5_1_15:64422114-64427054:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3143920898438	2	528.314023	1054.61349	0.4255	0.0002248	0.55135	0.00029129	0.97685	0.00051609	528.3144814883359	39.675	1.4472	39.768	38.704	40.151	0.09267					143	51	4	0	0	0	0.0027997	3	8416	8323;8369;8416		104.48	45.116	1	2720600			25511	543	14540	14541	31952;31953;31954	31954					0.08837120742964544
LPRAVGTQTL	10	Unmodified	_LPRAVGTQTL_					0	0	0		ENST00000560260.5_1_15:64422114-64427054:+|nuORF;nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1	ENST00000560260.5_1_15:64422114-64427054:+|nuORF	ENST00000560260.5_1_15:64422114-64427054:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3143920898438	2	528.314023	1054.61349	0.49303	0.00026047	0.36869	0.00019478	0.86172	0.00045526	528.3144418917071	39.617	1.678	39.717	39.046	40.724	0.099407					134	60	4	0	0	0	0.0027997	3	8381	8326;8381;8430		104.48	35.54	1	2906600			25512	543	14540	14541	31955;31956;31957	31956					0.08837120742964544
LPRCILSV	8	Unmodified	_LPRCILSV_					0	0	0		ENST00000564630.5_1_15:43477651-43478217:+|nuORF	ENST00000564630.5_1_15:43477651-43478217:+|nuORF	ENST00000564630.5_1_15:43477651-43478217:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.770263671875	2	450.770406	899.526258	0.15594	7.0294E-05	-1.0321	-0.00046524	-0.87615	-0.00039494	450.77062630714363	46.226	4.6753	46.292	45.782	50.457	0.065048					345	171	6	0	0	0	0.20518	1	10983	10983		42.095	0	1	117510000			25513	11953	14541	14542	31958	31958					0.07247623267687686
LPRDEADAL	9	Unmodified	_LPRDEADAL_					0	0	0		nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3	nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236|APOL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.779296875	2	500.258914	998.503274	-0.52929	-0.00026478	0.25524	0.00012769	-0.27405	-0.0001371	500.2591833349266	35.118	0.46239	35.196	35.005	35.467	0.077377					29	16	3	0	0	0	0.24848	1	6973	6973		13.906	1.3745	1	182100			25514	3357	14542	14543	31959	31959					0.003962756838859605
LPRDPGSSV	9	Unmodified	_LPRDPGSSV_					0	0	0		nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.5697326660156	2	464.248349	926.482145	-0.37287	-0.0001731	0.25605	0.00011887	-0.11682	-5.4233E-05	464.24831189356235	27.995	0.51453	27.995	27.763	28.277	0					24	17	2	0	0	0	0.18479	1	4807	4807		34.932	16.786	1	165660			25515	2141	14543	14544	31960	31960					0.015963103750550545
LPRDPGSSV	9	Unmodified	_LPRDPGSSV_					0	0	0		nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.24798583984375	2	464.248349	926.482145	-0.22699	-0.00010538	0.042697	1.9822E-05	-0.18429	-8.5557E-05	464.2482214899097	27.931	0.55468	27.931	27.687	28.242	0.0004673					28	19	2	0	0	0	0.11201	1	4815	4815		36.506	2.4038	1	143590			25516	2141	14543	14544	31961	31961					0.015963103750550545
LPRDPSSEV	9	Unmodified	_LPRDPSSEV_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.25872802734375	2	500.258914	998.503274	0.32058	0.00016037	-0.20026	-0.00010018	0.12032	6.0192E-05	500.2588067595957	31.59	0.44112	31.631	31.255	31.696	0.040991					27	15	2	0	0	0	0.152	1	5863	5863		37.075	2.6729	1	328510			25517	8151	14544	14545	31962	31962					0.003962756839086978
LPRDPSSEV	9	Unmodified	_LPRDPSSEV_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	500.258914	998.503274	0.20483	0.00010247	0.14877	7.4422E-05	0.3536	0.00017689	500.2589268769366	31.615	0.57172	31.615	31.258	31.829	0	0.0026092	0.00020158	NaN	37.075	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405980			25518	8151	14544	14545							0.003962756839086978
LPRDRQALV	9	Unmodified	_LPRDRQALV_					0	0	0		ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3;ENSG00000112576|ENST00000372991|CCND3;ENST00000505884.5_1_6:41904922-41997824:-|nuORF;ENST00000511161.5_1_6:41904922-42016364:-|nuORF;ENST00000513956.5_1_6:41904284-42016364:-|nuORF;ENST00000505672.5_1_6:41904922-42016364:-|nuORF;nc|ENSG00000112576|P30281-2|CCND3	ENST00000510058.1_1_6:41904922-41909441:-|nuORF	ENST00000510058.1_1_6:41904922-41909441:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.3197021484375	2	534.31964	1066.62473	0.33966	0.00018149	-0.59479	-0.00031781	-0.25512	-0.00013632	534.3194534752829	27.344	0.69956	27.344	27.063	27.763	0					43	23	3	0	0	0	0.25123	1	4611	4611		12.241	2.1667	1	369330			25519	2442	14545	14546	31963	31963					0.09407942837083283
LPRDRQALV	9	Unmodified	_LPRDRQALV_					0	0	0		ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3;ENSG00000112576|ENST00000372991|CCND3;ENST00000505884.5_1_6:41904922-41997824:-|nuORF;ENST00000511161.5_1_6:41904922-42016364:-|nuORF;ENST00000513956.5_1_6:41904284-42016364:-|nuORF;ENST00000505672.5_1_6:41904922-42016364:-|nuORF;nc|ENSG00000112576|P30281-2|CCND3	ENST00000510058.1_1_6:41904922-41909441:-|nuORF	ENST00000510058.1_1_6:41904922-41909441:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.3197631835938	2	534.31964	1066.62473	0.29873	0.00015962	-0.59734	-0.00031917	-0.29861	-0.00015955	534.3194633535783	27.339	0.70484	27.328	27.132	27.837	-0.01156					42	24	3	0	0	0	0.14646	1	4611	4611		43.772	24.515	1	403400			25520	2442	14545	14546	31964	31964					0.09407942837083283
LPREELTWC	9	Unmodified	_LPREELTWC_					0	0	0			REV__ENSG00000155729|ENST00000359878|KCTD18	REV__ENSG00000155729|ENST00000359878|KCTD18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.3377685546875	2	573.784241	1145.55393	0.20112	0.0001154	0.81514	0.00046772	1.0163	0.00058312	573.7846998611566	39.383	0.2991	39.475	39.278	39.577	0.09267					15	10	2	0	0	0	0.24913	1	8281	8281		12.532	1.7076	1	178690	+		25521	16708	14546	14547	31965	31965					-0.013025182627643517
LPREELTWC	9	Unmodified	_LPREELTWC_					0	0	0			REV__ENSG00000155729|ENST00000359878|KCTD18	REV__ENSG00000155729|ENST00000359878|KCTD18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.3380126953125	2	573.784241	1145.55393	0.26808	0.00015382	-0.12198	-6.9992E-05	0.1461	8.3828E-05	573.7840535606144	39.311	0.24551	39.411	39.347	39.593	0.099407					13	8	2	0	0	0	0.24913	1	8292	8292		12.532	0	1	136500	+		25522	16708	14546	14547	31966	31966					-0.013025182627643517
LPREILNLI	9	Unmodified	_LPREILNLI_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8425903320312	2	540.842416	1079.67028	0.68601	0.00037102	-0.326	-0.00017631	0.36001	0.00019471	540.8421685748696	72.704	0.95046	72.675	72.365	73.315	-0.029305					74	33	3	0	0	0	0.069258	1	18561	18561		45.74	5.7902	1	1140700			25523	5677	14547	14548	31967	31967					0.13363168299474637
LPRELVVTV	9	Unmodified	_LPRELVVTV_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.3212890625	2	513.321317	1024.62808	0.50932	0.00026145	-0.22628	-0.00011615	0.28305	0.00014529	513.321145232137	55.142	1.2281	55.142	54.626	55.854	0					125	44	4	0	0	0	0.032589	1	13145	13145		59.368	9.8141	1	6824600			25524	2196	14548	14549	31968	31968					0.11675192891084407
LPRELVVTV	9	Unmodified	_LPRELVVTV_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.3214111328125	2	513.321317	1024.62808	0.51541	0.00026457	-0.20526	-0.00010537	0.31015	0.00015921	513.3211508006262	55.073	1.3151	55.142	54.672	55.987	0.068287					131	48	4	0	0	0	0.032589	1	13121	13121		59.368	3.8656	1	6466200			25525	2196	14548	14549	31969	31969					0.11675192891084407
LPRELVVTV	9	Unmodified	_LPRELVVTV_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.3213500976562	2	513.321317	1024.62808	0.44108	0.00022642	-0.12533	-6.4336E-05	0.31575	0.00016208	513.3211521366798	55.135	1.0957	55.116	54.628	55.723	-0.019081					110	40	4	0	0	0	0.032589	1	13180	13180		59.368	13.669	1	6255900			25526	2196	14548	14549	31970	31970					0.11675192891084407
LPRFILCR	8	Unmodified	_LPRFILCR_					0	0	0		ENST00000563915.5_1_16:29831829-29841846:+|nuORF;ENST00000566066.5_1_16:29837369-29841846:+|nuORF;ENST00000566554.1_1_16:29841580-29841846:+|nuORF;ENST00000562285.1_1_16:29831098-29841846:+|nuORF	ENST00000563915.5_1_16:29831829-29841846:+|nuORF	ENST00000563915.5_1_16:29831829-29841846:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.77960205078125	2	509.304947	1016.59534	0.1416	7.2116E-05	-0.054699	-2.7858E-05	0.086899	4.4258E-05	509.304834609818	30.893	0.1408	30.921	30.869	31.009	0.027946					6	4	2	0	0	0	0.34337	1	5723	5723		2.3027	0.24298	1	80910			25527	11920	14549	14550	31971	31971					0.08770707287249024
LPRFSTMPF	9	Unmodified	_LPRFSTMPF_					0	0	0		ENSG00000197565|ENST00000334504|COL4A6;nc|ENSG00000197565|Q14031|COL4A6	ENSG00000197565|ENST00000334504|COL4A6	ENSG00000197565|ENST00000334504|COL4A6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2955322265625	2	548.28642	1094.55829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.184	1	59.275	58.775	59.775	0.091301								0	0	0	0.20303	1	14390	14390		21.537	0.66577	1				25528	7978	14550	14551	31972	31972					0.014789909508181154
LPRFVRSEF	9	Unmodified	_LPRFVRSEF_					0	0	0		nc|ENSG00000143248|O15539-3|RGS5;ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-2|RGS5	nc|ENSG00000143248|O15539-3|RGS5	nc|ENSG00000143248|O15539-3|RGS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.822021484375	2	575.822015	1149.62948	0.18675	0.00010754	0.0047946	2.7609E-06	0.19155	0.0001103	575.8219071388742	46.648	0.91294	46.648	46.111	47.024	0					62	32	3	0	0	0	0.0013683	1	10553	10553		118.07	74.21	1	1832900			25529	4493	14551	14552	31973	31973					0.060648269798548426
LPRFVRSEF	9	Unmodified	_LPRFVRSEF_					0	0	0		nc|ENSG00000143248|O15539-3|RGS5;ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-2|RGS5	nc|ENSG00000143248|O15539-3|RGS5	nc|ENSG00000143248|O15539-3|RGS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8217163085938	2	575.822015	1149.62948	0.36147	0.00020814	-0.39085	-0.00022506	-0.029381	-1.6918E-05	575.8217021858512	46.39	0.92674	46.443	45.864	46.79	0.052574					71	33	3	0	0	0	0.0016712	1	10424	10424		114.2	66.453	1	1807800			25530	4493	14551	14552	31974	31974					0.060648269798548426
LPRFVRSEF	9	Unmodified	_LPRFVRSEF_					0	0	0		nc|ENSG00000143248|O15539-3|RGS5;ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-2|RGS5	nc|ENSG00000143248|O15539-3|RGS5	nc|ENSG00000143248|O15539-3|RGS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8218994140625	2	575.822015	1149.62948	0.089136	5.1327E-05	-0.19019	-0.00010951	-0.10105	-5.8187E-05	575.8218576304823	46.447	0.98837	46.502	45.889	46.877	0.054371					81	35	3	0	0	0	0.001957	2	10423	10423;10489		110.55	63.805	1	1837200			25531	4493	14551	14552	31975;31976	31975					0.060648269798548426
LPRGAAKAI	9	Unmodified	_LPRGAAKAI_					0	0	0		nc|ENSG00000102100|P78381-5|SLC35A2;nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2	nc|ENSG00000102100|P78381-5|SLC35A2	nc|ENSG00000102100|P78381-5|SLC35A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7873840332031	2	448.787444	895.560336	0.20415	9.1618E-05	0.055698	2.4996E-05	0.25984	0.00011661	448.7873387197565	21.657	0.72025	21.608	21.344	22.064	-0.049377					58	25	3	0	0	0	0.17787	1	2936	2936		26.884	7.4447	1	502230			25532	1745	14552	14553	31977	31977					0.10837787750938332
LPRGEKPNPL	10	Unmodified	_LPRGEKPNPL_					0	0	0		ENSG00000168092|ENST00000527958|PAFAH1B2	ENSG00000168092|ENST00000527958|PAFAH1B2	ENSG00000168092|ENST00000527958|PAFAH1B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8265991210938	2	560.827298	1119.64004	0.21688	0.00012163	-0.32223	-0.00018072	-0.10536	-5.9087E-05	560.8269222926789	26.993	0.45317	26.993	26.871	27.324	0					26	15	2	0	0	0	0.37133	1	4554	4554		8.7454	0.58988	1	85635			25533	6247	14553	14554	31978	31978					0.08500809634256257
LPRGEKPNPL	10	Unmodified	_LPRGEKPNPL_					0	0	0		ENSG00000168092|ENST00000527958|PAFAH1B2	ENSG00000168092|ENST00000527958|PAFAH1B2	ENSG00000168092|ENST00000527958|PAFAH1B2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.827298	1119.64004	0.23781	0.00013337	-0.24251	-0.000136	-0.0047013	-2.6366E-06	560.8271009851532	27.037	0.50319	27.016	26.763	27.266	-0.021412	-0.010816	2.0769E-05	NaN	8.7454	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88371			25534	6247	14553	14554							0.08500809634256257
LPRGEKPNPL	10	Unmodified	_LPRGEKPNPL_					0	0	0		ENSG00000168092|ENST00000527958|PAFAH1B2	ENSG00000168092|ENST00000527958|PAFAH1B2	ENSG00000168092|ENST00000527958|PAFAH1B2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	560.827298	1119.64004	0.25914	0.00014534	-0.26533	-0.0001488	-0.0061819	-3.467E-06	560.8270561953032	27.083	0.44394	27.072	26.822	27.266	-0.011562	0.04498	-4.8252E-06	NaN	8.7454	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107520			25535	6247	14553	14554							0.08500809634256257
LPRGFGSLPAL	11	Unmodified	_LPRGFGSLPAL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3322143554688	2	564.332216	1126.64988	0.45705	0.00025793	-0.2279	-0.00012861	0.22915	0.00012932	564.3321454783548	66.249	0.99969	66.249	65.795	66.794	0					101	35	4	0	0	0	0.0014832	3	16589	16504;16548;16589		90.135	49.59	1	3301000			25536	4816	14554	14555	31979;31980;31981	31981					0.09161997639648689
LPRGFGSLPAL	11	Unmodified	_LPRGFGSLPAL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3323974609375	2	564.332216	1126.64988	0.55092	0.0003109	-0.33852	-0.00019104	0.2124	0.00011987	564.3320755173088	66.146	0.99202	66.23	65.834	66.826	0.083832					103	35	4	0	0	0	0.0029822	3	16521	16468;16521;16570		84.522	49.59	1	3179400			25537	4816	14554	14555	31982;31983;31984	31983					0.09161997639648689
LPRGFGSLPAL	11	Unmodified	_LPRGFGSLPAL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.332275390625	2	564.332216	1126.64988	0.29026	0.0001638	-0.09337	-5.2692E-05	0.19689	0.00011111	564.3322339141213	66.268	0.90598	66.255	65.859	66.765	-0.013588					97	32	4	0	0	0	0.0012105	3	16544	16501;16544;16587		93.938	53.988	1	3052400			25538	4816	14554	14555	31985;31986;31987	31986					0.09161997639648689
LPRGGLTSI	9	Unmodified	_LPRGGLTSI_					0	0	0		ENSG00000105339|ENST00000519811|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;nc|ENSG00000105339|A2RUS2-3|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENSG00000105339|ENST00000519811|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENSG00000105339|ENST00000519811|DENND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2770080566406	2	457.276909	912.539266	-0.16878	-7.718E-05	0.24464	0.00011187	0.075857	3.4688E-05	457.27698852232425	42.496	1.0915	42.496	42.141	43.233	0					89	39	4	0	0	0	0.014206	3	9207	9207;9256;9310		72.968	12.894	1	2588500			25539	1967;11476	14555	14556	31988;31989;31990	31988					0.07949777651424483
LPRGGLTSI	9	Unmodified	_LPRGGLTSI_					0	0	0		ENSG00000105339|ENST00000519811|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;nc|ENSG00000105339|A2RUS2-3|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENSG00000105339|ENST00000519811|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENSG00000105339|ENST00000519811|DENND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2767333984375	2	457.276909	912.539266	0.14121	6.4571E-05	-0.2095	-9.5798E-05	-0.068288	-3.1227E-05	457.2767868870599	42.27	1.1008	42.355	42.034	43.135	0.085197					99	39	4	0	0	0	0.0042138	1	9215	9215		92.653	13.925	1	3054100			25540	1967;11476	14555	14556	31991	31991					0.07949777651424483
LPRGGLTSI	9	Unmodified	_LPRGGLTSI_					0	0	0		ENSG00000105339|ENST00000519811|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;nc|ENSG00000105339|A2RUS2-3|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENSG00000105339|ENST00000519811|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENSG00000105339|ENST00000519811|DENND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.27679443359375	2	457.276909	912.539266	0.21659	9.9042E-05	-0.22915	-0.00010479	-0.012564	-5.7451E-06	457.27679987925376	42.202	1.1661	42.294	41.929	43.095	0.091362					94	41	3	0	0	0	0.014206	2	9184	9184;9236		72.968	7.7329	1	3096500			25541	1967;11476	14555	14556	31992;31993	31992					0.07949777651424483
LPRGGRGR	8	Unmodified	_LPRGGRGR_					0	0	0		ENST00000588254.1_1_19:56000931-56001261:+|nuORF	ENST00000588254.1_1_19:56000931-56001261:+|nuORF	ENST00000588254.1_1_19:56000931-56001261:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7795104980469	2	434.764835	867.515117	-0.87826	-0.00038184	-2.1085	-0.00091671	-2.9868	-0.0012985	434.7666903688746	34.762	1.3097	34.839	34.249	35.559	0.077381					80	46	3	0	0	0	0.4397	2	6915	6915;7080		9.3474	0	1	188500			25542	12142	14556	14557	31994;31995	31994					0.07605982008408319
LPRGGSGSVL	10	Unmodified	_LPRGGSGSVL_					0	0	0		nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.77203369140625	2	471.771991	941.529429	0.33629	0.00015865	0.83498	0.00039392	1.1713	0.00055258	471.77186670218816	32.397	1.2746	32.397	31.9	33.174	0					122	45	4	0	0	0	0.18888	1	6197	6197		55.235	55.235	1	2187000			25543	5915	14557	14558	31996	31996					0.05632589646052111
LPRGGSGSVL	10	Unmodified	_LPRGGSGSVL_					0	0	0		nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7719421386719	2	471.771991	941.529429	0.45917	0.00021662	0.67912	0.00032039	1.1383	0.00053701	471.77178986748237	32.292	1.616	32.347	31.696	33.312	0.055309					126	57	4	0	0	0	0.22874	1	6126	6126		43.982	43.982	1	2455000			25544	5915	14557	14558	31997	31997					0.05632589646052111
LPRGIGHLTNL	11	Unmodified	_LPRGIGHLTNL_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.7920532226562	2	595.853847	1189.69314	0.20047	0.00011945	-0.31434	-0.0001873	-0.11386	-6.7846E-05	595.8534341290748	46.073	0.30836	46.132	45.9	46.209	0.059834					18	10	2	0	0	0	0.25745	1	10331	10331		26.021	2.0001	1	352170			25545	2163	14558	14559	31998	31998					0.10588187416942674
LPRGIGHLTNL	11	Unmodified	_LPRGIGHLTNL_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.7922973632812	2	595.853847	1189.69314	0.49229	0.00029333	-0.54425	-0.0003243	-0.051965	-3.0964E-05	595.8534810631178	46.072	0.38132	46.137	45.872	46.253	0.065048					22	13	2	0	0	0	0.28192	1	10327	10327		26.021	5.5671	1	296780			25546	2163	14558	14559	31999	31999					0.10588187416942674
LPRGKGIRL	9	Unmodified	_LPRGKGIRL_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENSG00000280969|ENST00000629237|RPS4Y2;ENSG00000129824|ENST00000250784|RPS4Y1;ENST00000480755.1_1_19:9793972-9794221:-|nuORF;ENST00000479057.1_1_17:560036-560321:-|nuORF;ENST00000470671.1_1_X:71475533-71493153:-|nuORF	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.33502197265625	2	505.335093	1008.65563	0.26799	0.00013542	-0.34878	-0.00017625	-0.080795	-4.0829E-05	505.3349444620204	24.493	0.87318	24.493	24.162	25.035	0					99	29	4	0	0	0	0.10135	1	3771	3771		52.268	7.8613	1	582090			25547	8028	14559	14560	32000	32000					0.15165140941985555
LPRGKGIRLTI	11	Unmodified	_LPRGKGIRLTI_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENSG00000280969|ENST00000629237|RPS4Y2;ENST00000480755.1_1_19:9793972-9794221:-|nuORF;ENST00000479057.1_1_17:560036-560321:-|nuORF;ENST00000470671.1_1_X:71475533-71493153:-|nuORF	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.20465087890625	3	408.603068	1222.78738	0.30794	0.00012582	-0.3901	-0.0001594	-0.082162	-3.3572E-05	408.6028586053522	37.52	0.69718	37.52	37.259	37.956	0					59	24	3	0	0	0	0.26515	1	7721	7721		35.793	27.848	1	667830			25548	8028	14560	14561	32001	32001					0.1848932623906876
LPRGKGIRLTI	11	Unmodified	_LPRGKGIRLTI_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENSG00000280969|ENST00000629237|RPS4Y2;ENST00000480755.1_1_19:9793972-9794221:-|nuORF;ENST00000479057.1_1_17:560036-560321:-|nuORF;ENST00000470671.1_1_X:71475533-71493153:-|nuORF	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.2047424316406	3	408.603068	1222.78738	0.10254	4.1897E-05	-0.21508	-8.788E-05	-0.11254	-4.5983E-05	408.602938078048	37.425	0.82069	37.512	37.247	38.068	0.08741					70	29	3	0	0	0	0.30282	1	7722	7722		29.291	18.392	1	605620			25549	8028	14560	14561	32002	32002					0.1848932623906876
LPRGKGIRLTI	11	Unmodified	_LPRGKGIRLTI_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENSG00000280969|ENST00000629237|RPS4Y2;ENST00000480755.1_1_19:9793972-9794221:-|nuORF;ENST00000479057.1_1_17:560036-560321:-|nuORF;ENST00000470671.1_1_X:71475533-71493153:-|nuORF	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.20477294921875	3	408.603068	1222.78738	0.079575	3.2515E-05	-0.17714	-7.238E-05	-0.097564	-3.9865E-05	408.6029702525402	37.389	0.61803	37.482	37.222	37.84	0.093014					55	22	3	0	0	0	0.2696	1	7721	7721		28.271	17.372	1	755410			25550	8028	14560	14561	32003	32003					0.1848932623906876
LPRGMQPTEF	10	Oxidation (M)	_LPRGM(Oxidation (M))QPTEF_		LPRGM(1)QPTEF		LPRGM(100)QPTEF	0	0	1		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.2950439453125	2	596.294973	1190.57539	0.79554	0.00047438	-0.33431	-0.00019935	0.46122	0.00027503	596.2947957187697	37.079	1.2807	37.079	36.7	37.98	0					132	45	4	0	0	0	0.0034473	4	7544	7544;7591;7636;7688		100.71	62.533	1	7368200			25551	8210	14561	14562	32004;32005;32006;32007	32004		888			-0.012271332340333174
LPRGMQPTEF	10	Oxidation (M)	_LPRGM(Oxidation (M))QPTEF_		LPRGM(1)QPTEF		LPRGM(130)QPTEF	0	0	1		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.2953491210938	2	596.294973	1190.57539	0.5792	0.00034537	-0.38084	-0.00022709	0.19836	0.00011828	596.2948920966546	36.975	1.2173	37.062	36.656	37.873	0.08741					164	44	7	0	0	0	0.00013576	5	7537	7493;7537;7581;7631;7695		132.38	86.68	1	7085100			25552	8210	14561	14562	32008;32009;32010;32011;32012	32009		888			-0.012271332340333174
LPRGMQPTEF	10	Oxidation (M)	_LPRGM(Oxidation (M))QPTEF_		LPRGM(1)QPTEF		LPRGM(110)QPTEF	0	0	1		ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	ENSG00000204264|ENST00000374882|PSMB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.2952880859375	2	596.294973	1190.57539	0.67532	0.00040269	-0.37456	-0.00022335	0.30076	0.00017934	596.2948894223545	36.944	1.2071	37.037	36.687	37.894	0.093018					151	44	7	0	0	0	0.0017481	5	7528	7486;7528;7571;7611;7663		110.79	72.617	1	8191200			25553	8210	14561	14562	32013;32014;32015;32016;32017	32014		888			-0.012271332340333174
LPRGQIVAIL	10	Unmodified	_LPRGQIVAIL_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3510131835938	2	540.350409	1078.68626	0.062556	3.3802E-05	0.11041	5.9662E-05	0.17297	9.3464E-05	540.3504394211119	60.038	0.60295	60.038	59.756	60.359	0					37	21	2	0	0	0	0.11922	2	14649	14649;14702		43.858	11.553	1	1259800			25554	7347	14562	14563	32018;32019	32018					0.15006874536379655
LPRGQIVAIL	10	Unmodified	_LPRGQIVAIL_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3508911132812	2	540.350409	1078.68626	-0.17461	-9.4352E-05	0.44184	0.00023875	0.26723	0.0001444	540.3505586564403	59.945	0.59695	60.04	59.771	60.368	0.095093					45	21	3	0	0	0	0.1715	1	14607	14607		36.127	3.8215	1	1325300			25555	7347	14562	14563	32020	32020					0.15006874536379655
LPRGQIVAIL	10	Unmodified	_LPRGQIVAIL_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3507080078125	2	540.350409	1078.68626	0.37938	0.000205	-0.31472	-0.00017006	0.064653	3.4935E-05	540.3502092001221	60.029	0.55856	60.018	59.739	60.298	-0.011486					37	19	3	0	0	0	0.11922	1	14632	14632		43.858	11.553	1	1149000			25556	7347	14562	14563	32021	32021					0.15006874536379655
LPRGRKQLAL	10	Unmodified	_LPRGRKQLAL_					0	0	0		ENSG00000115165|ENST00000264192|CYTIP;ENST00000483929.1_1_2:158291208-158300532:-|nuORF;ENST00000462109.1_1_2:158290860-158300532:-|nuORF	ENSG00000115165|ENST00000264192|CYTIP	ENSG00000115165|ENST00000264192|CYTIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.3720092773438	2	576.372207	1150.72986	0.15256	8.7932E-05	0.21243	0.00012244	0.36499	0.00021037	576.3722578602616	25.196	0.63327	25.196	24.958	25.591	0					54	21	3	0	0	0	0.34795	2	3947	3947;3998		13.042	3.6593	1	358740			25557	2612	14563	14564	32022;32023	32022					0.16052484033525616
LPRGRKQLAL	10	Unmodified	_LPRGRKQLAL_					0	0	0		ENSG00000115165|ENST00000264192|CYTIP;ENST00000483929.1_1_2:158291208-158300532:-|nuORF;ENST00000462109.1_1_2:158290860-158300532:-|nuORF	ENSG00000115165|ENST00000264192|CYTIP	ENSG00000115165|ENST00000264192|CYTIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.372314453125	2	576.372207	1150.72986	0.1196	6.8935E-05	0.31897	0.00018384	0.43857	0.00025278	576.3722910761951	25.261	0.67816	25.205	24.972	25.65	-0.055931					54	23	3	0	0	0	0.31867	1	3990	3990		18.146	0	1	403980			25558	2612	14563	14564	32024	32024					0.16052484033525616
LPRGRKQLAL	10	Unmodified	_LPRGRKQLAL_					0	0	0		ENSG00000115165|ENST00000264192|CYTIP;ENST00000483929.1_1_2:158291208-158300532:-|nuORF;ENST00000462109.1_1_2:158290860-158300532:-|nuORF	ENSG00000115165|ENST00000264192|CYTIP	ENSG00000115165|ENST00000264192|CYTIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.372314453125	2	576.372207	1150.72986	-0.16529	-9.5268E-05	0.52077	0.00030016	0.35548	0.00020489	576.3723811244323	25.247	0.6463	25.216	24.953	25.599	-0.031408					56	22	3	0	0	0	0.34795	1	4018	4018		13.042	3.6593	1	322680			25559	2612	14563	14564	32025	32025					0.16052484033525616
LPRGRTFTL	9	Unmodified	_LPRGRTFTL_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;nc|ENSG00000123159|O14908-2|GIPC1;ENST00000585606.5_1_19:14590895-14591279:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1;ENST00000585606.5_1_19:14590895-14591279:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7606811523438	2	530.816733	1059.61891	0.67126	0.00035632	-1.1403	-0.0006053	-0.46905	-0.00024898	530.8169067450325	37.8	0.92966	37.8	37.477	38.406	0					83	32	4	0	0	0	0.22674	1	7855	7855		12.241	7.3436	1	1628500			25560	3090;12108	14564	14565	32026	32026					0.09148844325432037
LPRGRTFTL	9	Unmodified	_LPRGRTFTL_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;nc|ENSG00000123159|O14908-2|GIPC1;ENST00000585606.5_1_19:14590895-14591279:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1;ENST00000585606.5_1_19:14590895-14591279:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7605590820312	2	530.816733	1059.61891	0.44824	0.00023793	0.36734	0.00019499	0.81558	0.00043292	530.8168851964613	37.717	0.92762	37.808	37.555	38.483	0.090881					58	33	2	0	0	0	0.20881	1	7795	7795		21.537	12.154	1	1834400			25561	3090;12108	14564	14565	32027	32027					0.09148844325432037
LPRGRTFTL	9	Unmodified	_LPRGRTFTL_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;nc|ENSG00000123159|O14908-2|GIPC1;ENST00000585606.5_1_19:14590895-14591279:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1;ENST00000585606.5_1_19:14590895-14591279:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7607421875	2	530.816733	1059.61891	0.46336	0.00024596	-0.85821	-0.00045555	-0.39485	-0.00020959	530.8169167086118	37.691	0.94852	37.788	37.4	38.348	0.097527					94	34	4	0	0	0	0.22674	1	7802	7802		17.113	0	1	1750700			25562	3090;12108	14564	14565	32028	32028					0.09148844325432037
LPRGSRAHITL	11	Unmodified	_LPRGSRAHITL_					0	0	0		ENST00000472031.1_1_17:40118826-40125939:+|nuORF;ENST00000486438.1_1_17:40123824-40125939:+|nuORF;nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	ENST00000472031.1_1_17:40118826-40125939:+|nuORF	ENST00000472031.1_1_17:40118826-40125939:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.57916259765625	3	407.578923	1219.71494	-0.30647	-0.00012491	0.41507	0.00016917	0.1086	4.4262E-05	407.5791875000397	28.378	1.7421	28.378	28.008	29.75	0					187	61	5	0	0	0	0.13465	3	4927	4927;4976;5022		27.129	7.9849	1	6489800			25563	6749	14565	14566	32029;32030;32031	32029					0.11386992165512311
LPRGSRAHITL	11	Unmodified	_LPRGSRAHITL_					0	0	0		ENST00000472031.1_1_17:40118826-40125939:+|nuORF;ENST00000486438.1_1_17:40123824-40125939:+|nuORF;nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	ENST00000472031.1_1_17:40118826-40125939:+|nuORF	ENST00000472031.1_1_17:40118826-40125939:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5791931152344	3	407.578923	1219.71494	-0.19106	-7.7872E-05	0.36064	0.00014699	0.16958	6.9116E-05	407.5791655175251	28.359	1.9935	28.355	27.994	29.987	-0.0042572					173	69	5	0	0	0	0.13465	2	4929	4929;4980		29.291	10.147	1	6769000			25564	6749	14565	14566	32032;32033	32032					0.11386992165512311
LPRGSRAHITL	11	Unmodified	_LPRGSRAHITL_					0	0	0		ENST00000472031.1_1_17:40118826-40125939:+|nuORF;ENST00000486438.1_1_17:40123824-40125939:+|nuORF;nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	ENST00000472031.1_1_17:40118826-40125939:+|nuORF	ENST00000472031.1_1_17:40118826-40125939:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.8648681640625	2	610.864746	1219.71494	0.13573	8.2915E-05	0.14637	8.9413E-05	0.2821	0.00017233	610.8647481291886	28.345	0.60762	28.341	28.112	28.72	-0.0042572					48	21	3	0	0	0	0.32895	1	4988	4988		19.626	6.5835	1	458110			25565	6749	14565	14566	32034	32034					0.11386992165512311
LPRGSRAHITL	11	Unmodified	_LPRGSRAHITL_					0	0	0		ENST00000472031.1_1_17:40118826-40125939:+|nuORF;ENST00000486438.1_1_17:40123824-40125939:+|nuORF;nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	ENST00000472031.1_1_17:40118826-40125939:+|nuORF	ENST00000472031.1_1_17:40118826-40125939:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.57891845703125	3	407.578923	1219.71494	-0.28404	-0.00011577	0.41034	0.00016725	0.1263	5.1479E-05	407.5791822426943	28.35	2.1707	28.351	27.963	30.133	0.0004673					202	76	5	0	0	0	0.1175	3	5006	4920;4963;5006		31.462	12.318	1	6239200			25566	6749	14565	14566	32035;32036;32037	32037					0.11386992165512311
LPRGSSPSVL	10	Unmodified	_LPRGSSPSVL_					0	0	0		ENSG00000118707|ENST00000373872|TGIF2	ENSG00000118707|ENST00000373872|TGIF2	ENSG00000118707|ENST00000373872|TGIF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7928466796875	2	506.792924	1011.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.885	1	36.978	36.478	37.478	0.093018								0	0	0	0.25388	1	7532	7532		33.445	2.8084	1				25567	2841	14566	14567	32038	32038					0.06597145334569632
LPRHHPLVL	9	Unmodified	_LPRHHPLVL_					0	0	0		ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.S1016Gfs*8|1|0.03|ENSG00000066135|chr1:43704103-43704104|-/GGAAGGAG|frameshift_variant;nc|ENSG00000066135|O75164-2|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	ENSG00000066135|ENST00000372396|KDM4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8142700195312	2	541.335093	1080.65563	0.37276	0.00020179	0.16438	8.8982E-05	0.53714	0.00029077	541.3351189441879	29.444	0.45755	29.457	29.166	29.623	0.013474					26	15	2	0	0	0	0.25417	1	5289	5289		8.5933	3.3626	1	85116			25568	833	14567	14568	32039	32039					0.118531409419802
LPRHIVQRRPV	11	Unmodified	_LPRHIVQRRPV_					0	0	0			REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF	REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.62060546875	3	457.621233	1369.84187	-0.08647	-3.957E-05	-0.92428	-0.00042297	-1.0107	-0.00046254	457.62053574917667	106.33	0.16375	106.32	106.25	106.41	-0.0060501					54	21	4	0	0	0	0.44966	1	28122	28122		4.7159	1.1232	1	1784200	+		25569	19432	14568	14569	32040	32040					0.17174338110498866
LPRIFTSI	8	Unmodified	_LPRIFTSI_					0	0	0		nc|ENSG00000167085|P35232-2|PHB1;ENSG00000167085|ENST00000300408|PHB1;ENST00000355202.8_1_19:38187835-38188303:-|nuORF;ENST00000393345.8_1_17:47486298-47490626:-|nuORF	nc|ENSG00000167085|P35232-2|PHB1	nc|ENSG00000167085|P35232-2|PHB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7895202636719	2	473.789653	945.564752	0.13669	6.4764E-05	0.039913	1.891E-05	0.17661	8.3674E-05	473.7895662046816	62.986	1.2804	62.986	62.162	63.443	0					112	47	4	0	0	0	0.016169	3	15563	15509;15563;15614		107.19	35.563	1	2409500			25570	6145	14569	14570	32041;32042;32043	32042					0.08979252173844543
LPRIFTSI	8	Unmodified	_LPRIFTSI_					0	0	0		nc|ENSG00000167085|P35232-2|PHB1;ENSG00000167085|ENST00000300408|PHB1;ENST00000355202.8_1_19:38187835-38188303:-|nuORF;ENST00000393345.8_1_17:47486298-47490626:-|nuORF	nc|ENSG00000167085|P35232-2|PHB1	nc|ENSG00000167085|P35232-2|PHB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7895202636719	2	473.789653	945.564752	0.28927	0.00013705	-0.16826	-7.9722E-05	0.12101	5.7332E-05	473.7894740095402	62.85	1.3896	62.946	62.088	63.477	0.095726					112	50	4	0	0	0	0.021656	4	15504	15453;15504;15553;15602		99.799	27.596	1	2442900			25571	6145	14569	14570	32044;32045;32046;32047	32045					0.08979252173844543
LPRIFTSI	8	Unmodified	_LPRIFTSI_					0	0	0		nc|ENSG00000167085|P35232-2|PHB1;ENSG00000167085|ENST00000300408|PHB1;ENST00000355202.8_1_19:38187835-38188303:-|nuORF;ENST00000393345.8_1_17:47486298-47490626:-|nuORF	nc|ENSG00000167085|P35232-2|PHB1	nc|ENSG00000167085|P35232-2|PHB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7896728515625	2	473.789653	945.564752	0.20298	9.617E-05	-0.1099	-5.207E-05	0.09308	4.41E-05	473.78953699854566	62.986	1.4648	62.977	62.04	63.504	-0.0085526					131	54	4	0	0	0	0.0094041	4	15575	15480;15525;15575;15627		118.89	40.745	1	2458000			25572	6145	14569	14570	32048;32049;32050;32051	32050					0.08979252173844543
LPRILHCIR	9	Unmodified	_LPRILHCIR_					0	0	0			REV__ENSG00000138381|ENST00000260952|ASNSD1	REV__ENSG00000138381|ENST00000260952|ASNSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.316162109375	2	560.842228	1119.6699	0.12247	6.8689E-05	-2.9239	-0.0016398	-2.8014	-0.0015711	560.8418549802493	94.545	0.050644	94.545	94.524	94.575	0					5	4	2	0	0	0	0.25879	1	25226	25226		4.756	0.42677	1	14548	+		25573	15926	14570	14571	32052	32052					0.11485470098591577
LPRIQSTAL	9	Unmodified	_LPRIQSTAL_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8036804199219	2	499.803291	997.59203	0.61375	0.00030676	0.067825	3.3899E-05	0.68158	0.00034065	499.80318627674643	45.524	0.84125	45.524	44.991	45.832	0					60	30	3	0	0	0	0.027957	1	10163	10163		61.09	15.069	1	1020100			25574	8743	14571	14572	32053	32053					0.09313735714226823
LPRIQSTAL	9	Unmodified	_LPRIQSTAL_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.80340576171875	2	499.803291	997.59203	0.62293	0.00031134	-0.042351	-2.1167E-05	0.58058	0.00029017	499.8031889335499	45.394	0.7655	45.454	44.998	45.763	0.059834					63	26	4	0	0	0	0.010888	1	10162	10162		78.06	26.431	1	1052000			25575	8743	14571	14572	32054	32054					0.09313735714226823
LPRIQSTAL	9	Unmodified	_LPRIQSTAL_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.80340576171875	2	499.803291	997.59203	0.45766	0.00022874	0.335	0.00016743	0.79266	0.00039618	499.8032737496596	45.401	0.63547	45.466	45.091	45.727	0.065048					62	23	4	0	0	0	0.003673	2	10148	10095;10148		96.936	36.862	1	986000			25576	8743	14571	14572	32055;32056	32056					0.09313735714226823
LPRKAGVFSDL	11	Unmodified	_LPRKAGVFSDL_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8485107421875	2	601.84823	1201.68191	0.43072	0.00025923	0.27381	0.00016479	0.70453	0.00042402	601.8482916234365	43.781	0.81129	43.781	43.494	44.306	0					82	29	4	0	0	0	0.0035703	3	9658	9611;9658;9713		83.278	52.058	1	2672200			25577	295	14572	14573	32057;32058;32059	32058					0.0891336532281457
LPRKAGVFSDL	11	Unmodified	_LPRKAGVFSDL_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.8480834960938	2	601.84823	1201.68191	0.61426	0.00036969	-0.078455	-4.7218E-05	0.5358	0.00032247	601.8480709212488	43.463	0.76087	43.541	43.263	44.024	0.077515					78	27	4	0	0	0	0.0011409	3	9513	9513;9562;9610		94.909	62.123	1	2474400			25578	295	14572	14573	32060;32061;32062	32060					0.0891336532281457
LPRKAGVFSDL	11	Unmodified	_LPRKAGVFSDL_					0	0	0		ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	ENSG00000002726|ENST00000360937|AOC1	ENSG00000002726|ENST00000360937|AOC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.8484497070312	2	601.84823	1201.68191	0.44864	0.00027002	0.1766	0.00010629	0.62525	0.0003763	601.8481937058535	43.478	0.75183	43.562	43.268	44.02	0.083992					88	27	4	0	0	0	1.6471E-05	3	9546	9498;9546;9595		118.21	85.424	1	2324800			25579	295	14572	14573	32063;32064;32065	32064					0.0891336532281457
LPRKGAQL	8	Unmodified	_LPRKGAQL_					0	0	0		ENSG00000175756|ENST00000338338|AURKAIP1	ENSG00000175756|ENST00000338338|AURKAIP1	ENSG00000175756|ENST00000338338|AURKAIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7796630859375	2	441.779619	881.544686	-0.071962	-3.1791E-05	-0.011026	-4.8712E-06	-0.082988	-3.6662E-05	441.779544894436	17.824	0.97281	17.707	17.467	18.44	-0.11739					68	33	3	0	0	0	0.43302	1	1733	1733		11.64	0	1	156180			25580	6881	14573	14574	32066	32066					0.09917501233894654
LPRKHIQGL	9	Unmodified	_LPRKHIQGL_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3325805664062	2	531.33255	1060.65055	0.5178	0.00027512	-0.40731	-0.00021642	0.11049	5.8708E-05	531.3323422315293	21.57	0.48088	21.57	21.338	21.819	0					35	16	3	0	0	0	0.069366	2	2867	2867;2916		45.7	30.861	1	160110			25581	4521	14574	14575	32067;32068	32067					0.12264837079374047
LPRKHIQGL	9	Unmodified	_LPRKHIQGL_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3327026367188	2	531.33255	1060.65055	0.47375	0.00025172	-0.42974	-0.00022833	0.044008	2.3383E-05	531.3323712761977	21.66	0.46651	21.56	21.338	21.804	-0.10034					36	16	3	0	0	0	0.088443	1	2920	2920		39.95	19.496	1	151890			25582	4521	14574	14575	32069	32069					0.12264837079374047
LPRKHIQGL	9	Unmodified	_LPRKHIQGL_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3327026367188	2	531.33255	1060.65055	0.45655	0.00024258	-0.35659	-0.00018947	0.099956	5.311E-05	531.3323498046868	21.646	0.45658	21.596	21.373	21.83	-0.049377					35	15	3	0	0	0	0.12642	1	2890	2890		34.402	23.578	1	144250			25583	4521	14574	14575	32070	32070					0.12264837079374047
LPRKPVAGAL	10	Unmodified	_LPRKPVAGAL_					0	0	0		ENSG00000198612|ENST00000354371|COPS8;nc|ENSG00000198612|Q99627-2|COPS8	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.32977294921875	2	511.329476	1020.6444	0.47515	0.00024296	-0.23847	-0.00012193	0.23668	0.00012102	511.32922965368766	29.763	0.51288	29.763	29.521	30.034	0					32	17	3	0	0	0	0.27059	1	5354	5354		24.021	9.1823	1	192500			25584	8095	14575	14576	32071	32071					0.13490318847846083
LPRKPVAGAL	10	Unmodified	_LPRKPVAGAL_					0	0	0		ENSG00000198612|ENST00000354371|COPS8;nc|ENSG00000198612|Q99627-2|COPS8	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.3292541503906	2	511.329476	1020.6444	0.30956	0.00015829	-0.37801	-0.00019329	-0.068452	-3.5001E-05	511.3291390167547	29.705	0.5627	29.717	29.469	30.032	0.012266					31	18	2	0	0	0	0.21644	1	5330	5330		30.637	14.789	1	180810			25585	8095	14575	14576	32072	32072					0.13490318847846083
LPRKPVAGAL	10	Unmodified	_LPRKPVAGAL_					0	0	0		ENSG00000198612|ENST00000354371|COPS8;nc|ENSG00000198612|Q99627-2|COPS8	ENSG00000198612|ENST00000354371|COPS8	ENSG00000198612|ENST00000354371|COPS8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	511.329476	1020.6444	0.0034091	1.7432E-06	0.056282	2.8778E-05	0.059691	3.0522E-05	511.3294531890867	29.75	0.43746	29.763	29.536	29.974	0.013475	0.01506	0.00021281	NaN	30.637	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172700			25586	8095	14575	14576							0.13490318847846083
LPRKRLPY	8	Unmodified	_LPRKRLPY_					0	0	0			REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.8059692382812	2	521.829643	1041.64473	0.54585	0.00028484	-0.50925	-0.00026574	0.036603	1.9101E-05	521.8293794112631	45.064	0.50467	45.132	44.952	45.456	0.068569					26	17	2	0	0	0	0.33995	1	10020	10020		15.768	0	1	175520	+		25587	16028	14576	14577	32073	32073					0.12557738567693377
LPRKRLPY	8	Unmodified	_LPRKRLPY_					0	0	0			REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	521.829643	1041.64473	0.52264	0.00027273	-0.46127	-0.0002407	0.061369	3.2024E-05	521.8292986649341	45.136	0.43065	45.211	44.988	45.418	0.075047	-0.0016561	4.1407E-05	NaN	15.768	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148130	+		25588	16028	14576	14577							0.12557738567693377
LPRLESLDI	9	Unmodified	_LPRLESLDI_					0	0	0		ZYG11B|p.M375Rfs*16|1|0.23|ENSG00000162378|chr1:52784908-52784908|T/-|frameshift_variant;ENSG00000162378|ENST00000294353|ZYG11B;ENSG00000203995|ENST00000371528|ZYG11A	ZYG11B|p.M375Rfs*16|1|0.23|ENSG00000162378|chr1:52784908-52784908|T/-|frameshift_variant;ENSG00000203995|ENST00000371528|ZYG11A	ENSG00000203995|ENST00000371528|ZYG11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3082275390625	2	528.308406	1054.60226	0.53761	0.00028402	-0.72208	-0.00038148	-0.18447	-9.7457E-05	528.3079869824322	62.797	0.74657	62.797	62.396	63.143	0					56	27	3	0	0	0	0.073988	1	15511	15511		43.982	2.1422	1	475640			25589	8194;5563	14577	14578	32074	32074					0.07714298648807016
LPRLESLDI	9	Unmodified	_LPRLESLDI_					0	0	0		ZYG11B|p.M375Rfs*16|1|0.23|ENSG00000162378|chr1:52784908-52784908|T/-|frameshift_variant;ENSG00000162378|ENST00000294353|ZYG11B;ENSG00000203995|ENST00000371528|ZYG11A	ZYG11B|p.M375Rfs*16|1|0.23|ENSG00000162378|chr1:52784908-52784908|T/-|frameshift_variant;ENSG00000203995|ENST00000371528|ZYG11A	ENSG00000203995|ENST00000371528|ZYG11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3081665039062	2	528.308406	1054.60226	0.49741	0.00026278	-0.93861	-0.00049587	-0.4412	-0.00023309	528.3079070591778	62.648	0.67889	62.745	62.497	63.175	0.096989					49	24	3	0	0	0	0.10812	1	15477	15477		37.075	3.6297	1	562600			25590	8194;5563	14577	14578	32075	32075					0.07714298648807016
LPRLGLLAL	9	Unmodified	_LPRLGLLAL_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;nc|ENSG00000115207|Q8WUA4-2|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.72625732421875	2	483.328945	964.643337	0.2889	0.00013964	0.03244	1.5679E-05	0.32134	0.00015532	483.3288171602556	75.197	0.56429	75.249	74.971	75.536	0.052368					39	20	3	0	0	0	0.24688	1	19294	19294		14.838	3.198	1	303870			25591	2616	14578	14579	32076	32076					0.1596010447893832
LPRLIIRKV	9	Unmodified	_LPRLIIRKV_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;RBPJ|p.E392Rfs*41|1|0.05|ENSG00000168214|chr4:26430508-26430509|-/A|frameshift_variant;RBPJ|p.E392Afs*42|1|0.05|ENSG00000168214|chr4:26430509-26430510|-/CTAA|frameshift_variant;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;ENST00000411556.2_1_9:44472681-44473188:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.816162109375	2	554.389868	1106.76518	0.22186	0.000123	0.63395	0.00035146	0.85581	0.00047445	554.390021594605	38.169	0.34128	38.266	38.007	38.348	0.097527					16	11	2	0	0	0	0.25706	1	7916	7916		6.7232	2.7788	1	95044			25592	6254	14579	14580	32077	32077					0.21607146561291302
LPRLIPVL	8	Unmodified	_LPRLIPVL_					0	0	0		ENST00000506951.5_1_4:20711306-20720453:+|nuORF;nc|ENSG00000163138|Q8N7B6-4|PACRGL;nc|ENSG00000163138|Q8N7B6-2|PACRGL;ENSG00000163138|ENST00000503585|PACRGL;ENST00000426249.1_1_17:18364441-18364834:+|nuORF	ENST00000506951.5_1_4:20711306-20720453:+|nuORF	ENST00000506951.5_1_4:20711306-20720453:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.81829833984375	2	460.818213	919.621873	0.043826	2.0196E-05	0.27977	0.00012892	0.3236	0.00014912	460.8182492231853	67.938	0.81332	67.938	67.623	68.436	0					50	29	2	0	0	0	0.065797	2	17101	17056;17101		70.716	0	1	1398300			25593	5652	14580	14581	32078;32079	32079					0.15884719450207285
LPRLIPVL	8	Unmodified	_LPRLIPVL_					0	0	0		ENST00000506951.5_1_4:20711306-20720453:+|nuORF;nc|ENSG00000163138|Q8N7B6-4|PACRGL;nc|ENSG00000163138|Q8N7B6-2|PACRGL;ENSG00000163138|ENST00000503585|PACRGL;ENST00000426249.1_1_17:18364441-18364834:+|nuORF	ENST00000506951.5_1_4:20711306-20720453:+|nuORF	ENST00000506951.5_1_4:20711306-20720453:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.81829833984375	2	460.818213	919.621873	0.18075	8.3292E-05	4.377	0.002017	4.5578	0.0021003	460.8181358989423	67.974	0.894	67.958	67.593	68.487	-0.016296					99	31	5	0	0	0	0.15515	2	17103	17054;17103		50.855	0	1	2186900			25594	5652	14580	14581	32080;32081	32081					0.15884719450207285
LPRLLFLL	8	Unmodified	_LPRLLFLL_					0	0	0		ENST00000515535.1_1_19:58596465-58596771:+|nuORF	ENST00000515535.1_1_19:58596465-58596771:+|nuORF	ENST00000515535.1_1_19:58596465-58596771:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.80224609375	2	492.833863	983.653173	0.40156	0.0001979	-0.31794	-0.00015669	0.083628	4.1215E-05	492.83344981178345	82.49	0.51192	82.563	82.332	82.844	0.073097					48	20	3	0	0	0	0.30503	1	21489	21489		30.225	0	1	407390			25595	11426	14581	14582	32082	32082					0.160692924843147
LPRLLPRRARA	11	Unmodified	_LPRLLPRRARA_					0	0	0		ENST00000533277.5_1_11:66610677-66610866:+|nuORF	ENST00000533277.5_1_11:66610677-66610866:+|nuORF	ENST00000533277.5_1_11:66610677-66610866:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.546142578125	3	440.289595	1317.84696	-0.2009	-8.8455E-05	-0.078275	-3.4464E-05	-0.27918	-0.00012292	440.2895430593989	27.567	0.77375	27.556	27.318	28.092	-0.01156					66	26	3	0	0	0	0.33287	1	4651	4651		2.8433	1.6285	1	395850			25596	11647	14582	14583	32083	32083					0.20074641973110374
LPRLLRLNIS	10	Unmodified	_LPRLLRLNIS_					0	0	0		ENSG00000020181|ENST00000412232|ADGRA2;nc|ENSG00000020181|Q96PE1-2|ADGRA2;nc|ENSG00000020181|Q96PE1-3|ADGRA2	ENSG00000020181|ENST00000412232|ADGRA2	ENSG00000020181|ENST00000412232|ADGRA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.7791137695312	2	597.88769	1193.76083	0.27917	0.00016692	0.1443	8.6277E-05	0.42348	0.00025319	597.887762929876	52.577	0.41373	52.576	52.332	52.746	-0.00080872					21	14	2	0	0	0	0.31838	1	12359	12359		7.609	2.3121	1	348380			25597	503	14583	14584	32084	32084					0.17169637347728894
LPRLPVPAV	9	Unmodified	_LPRLPVPAV_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.313232421875	2	481.313295	960.612037	0.13977	6.7273E-05	0.23921	0.00011513	0.37898	0.00018241	481.3133219446355	61.993	1.4122	61.993	61.363	62.776	0					93	52	2	0	0	0	0.068501	4	15210	15210;15262;15314;15367		46.021	11.919	1	1885900			25598	2295	14584	14585	32085;32086;32087;32088	32085					0.130155314448416
LPRLPVPAV	9	Unmodified	_LPRLPVPAV_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.3132629394531	2	481.313295	960.612037	-0.089261	-4.2962E-05	0.40824	0.00019649	0.31898	0.00015353	481.3133969954956	61.815	1.2812	61.912	61.408	62.689	0.096985					83	46	2	0	0	0	0.019896	4	15218	15167;15218;15268;15318		64.236	22.142	1	1796200			25599	2295	14584	14585	32089;32090;32091;32092	32090					0.130155314448416
LPRLPVPAV	9	Unmodified	_LPRLPVPAV_					0	0	0		nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	nc|ENSG00000110090|P50416-2|CPT1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.3133239746094	2	481.313295	960.612037	0.071594	3.4459E-05	0.27401	0.00013188	0.3456	0.00016634	481.31334986026934	61.994	1.3486	61.986	61.297	62.646	-0.0085526					91	49	2	0	0	0	0.044952	3	15241	15189;15241;15374		54.774	12.679	1	1942200			25600	2295	14584	14585	32093;32094;32095	32094					0.130155314448416
LPRLQEIQ	8	Unmodified	_LPRLQEIQ_					0	0	0		ENST00000383744.8_1_3:44673993-44688118:+|nuORF	ENST00000383744.8_1_3:44673993-44688118:+|nuORF	ENST00000383744.8_1_3:44673993-44688118:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8138732910156	2	498.795466	995.57638	0.5216	0.00026017	0.99869	0.00049814	1.5203	0.00075831	498.7961055797631	51.008	0.63148	51.055	50.848	51.479	0.046574					37	23	2	0	0	0	0.41097	1	11871	11871		18.135	2.2878	1	570810			25601	10015	14585	14586	32096	32096					0.07841449197189831
LPRLQGQVI	9	Unmodified	_LPRLQGQVI_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.271728515625	2	512.319109	1022.62366	0.25561	0.00013095	0.38007	0.00019472	0.63568	0.00032567	512.3192266723582	43.981	0.43604	43.981	43.819	44.255	0					27	15	3	0	0	0	0.23783	1	9699	9699		7.9102	1.187	1	483400	+		25602	14382	14586	14587	32097	32097					0.11325728468182206
LPRLSGLIE	9	Unmodified	_LPRLSGLIE_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;ENST00000484454.1_1_1:234534119-234536616:-|nuORF;ENST00000462259.5_1_1:234527325-234536616:-|nuORF	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.3238830566406	2	499.305667	996.596781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.005	1	57.005	56.505	57.505	0								0	0	0	0.19932	1	13728	13728		22.736	0	1				25603	742	14587	14588	32098	32098					0.0983461985700842
LPRLTPPVL	9	Unmodified	_LPRLTPPVL_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.3268737792969	2	503.326402	1004.63825	0.38453	0.00019354	0.54165	0.00027263	0.92618	0.00046617	503.32659054814445	62.725	1.8013	62.725	61.945	63.746	0					183	66	4	0	0	0	0.0079761	5	15478	15377;15421;15478;15523;15571		82.529	42.601	1	9318300			25604	5228	14588	14589	32099;32100;32101;32102;32103	32101					0.13611800616320124
LPRLTPPVL	9	Unmodified	_LPRLTPPVL_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.3268737792969	2	503.326402	1004.63825	0.39506	0.00019884	0.58544	0.00029467	0.9805	0.00049351	503.3265794392809	62.629	1.5364	62.726	62.004	63.54	0.096989					179	55	5	0	0	0	0.016723	5	15502	15321;15381;15450;15502;15554		69.105	36.319	1	9099300			25605	5228	14588	14589	32104;32105;32106;32107;32108	32107					0.13611800616320124
LPRLTPPVL	9	Unmodified	_LPRLTPPVL_					0	0	0		nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;nc|ENSG00000156261|P50990-3|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-2|CCT8	nc|ENSG00000156261|P50990-2|CCT8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.32684326171875	2	503.326402	1004.63825	0.33407	0.00016815	0.59578	0.00029987	0.92985	0.00046802	503.32661046914035	62.688	1.7533	62.679	61.905	63.659	-0.0085526					194	64	5	0	0	0	0.012386	5	15456	15357;15403;15456;15499;15542		75.761	34.598	1	9610200			25606	5228	14588	14589	32109;32110;32111;32112;32113	32111					0.13611800616320124
LPRNEADEL	9	Unmodified	_LPRNEADEL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7704467773438	2	528.769645	1055.52474	0.44894	0.00023739	0.72716	0.0003845	1.1761	0.00062189	528.7700077738324	32.783	1.1032	32.839	32.562	33.665	0.055309					105	39	5	0	0	0	3.6949E-07	4	6334	6249;6290;6334;6381		165.72	100.49	1	4416100			25607	1572	14589	14590	32114;32115;32116;32117	32116					-0.0008033928738768736
LPRNEADEL	9	Unmodified	_LPRNEADEL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7700805664062	2	528.769645	1055.52474	0.46621	0.00024652	0.73489	0.00038859	1.2011	0.00063511	528.7699918578534	32.862	1.0954	32.917	32.603	33.699	0.054375					111	39	5	0	0	0	2.5511E-05	4	6297	6253;6297;6340;6421		152.89	83.781	1	4994100			25608	1572	14589	14590	32118;32119;32120;32121	32119					-0.0008033928738768736
LPRNLLLLD	9	Unmodified	_LPRNLLLLD_					0	0	0			REV__ENSG00000168038|ENST00000301831|ULK4	REV__ENSG00000168038|ENST00000301831|ULK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.23779296875	2	533.834591	1065.65463	0.76807	0.00041002	0.61099	0.00032617	1.3791	0.00073619	533.8347355458959	75.022	0.6116	74.991	74.755	75.367	-0.031487					37	22	2	0	0	0	0.22674	1	19230	19230		22.736	0	1	377030	+		25609	17434	14590	14591	32122	32122					0.12442881782430959
LPRNQTALD	9	Unmodified	_LPRNQTALD_					0	0	0			REV__ENST00000508625.1_1_4:39911831-39915298:-|nuORF	REV__ENST00000508625.1_1_4:39911831-39915298:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.8092041015625	2	514.28018	1026.54581	0.62753	0.00032273	-0.15887	-8.1706E-05	0.46866	0.00024102	514.2787313713969	45.912	0.95147	45.912	45.424	46.375	0					47	34	3	0	0	0	0.21389	1	10443	10443		13.906	0	1	656560	+		25610	15134	14591	14592	32123	32123					0.03359670812119475
LPRNQTALD	9	Unmodified	_LPRNQTALD_					0	0	0			REV__ENST00000508625.1_1_4:39911831-39915298:-|nuORF	REV__ENST00000508625.1_1_4:39911831-39915298:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	514.28018	1026.54581	0.35135	0.00018069	-0.36851	-0.00018952	-0.017159	-8.8243E-06	514.2793097875912	45.571	0.84798	45.631	45.195	46.043	0.059834	-0.14078	-0.00012424	NaN	13.906	39	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	642130	+		25611	15134	14591	14592							0.03359670812119475
LPRPASPAL	9	Unmodified	_LPRPASPAL_					0	0	0		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.27947998046875	2	461.279452	920.544351	0.18022	8.3131E-05	0.24334	0.00011225	0.42356	0.00019538	461.2793475623888	40.674	0.59998	40.674	40.36	40.96	0					39	21	2	0	0	0	0.1558	1	8728	8728		34.932	0	1	543040			25612	6135	14592	14593	32124	32124					0.08090081514046688
LPRPASPAL	9	Unmodified	_LPRPASPAL_					0	0	0		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.279541015625	2	461.279452	920.544351	0.24544	0.00011321	0.074244	3.4247E-05	0.31968	0.00014746	461.2793075253526	40.532	0.56527	40.624	40.313	40.879	0.09267					44	20	3	0	0	0	0.07944	1	8692	8692		41.956	2.0059	1	647980			25613	6135	14592	14593	32125	32125					0.08090081514046688
LPRPASPAL	9	Unmodified	_LPRPASPAL_					0	0	0		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	461.279452	920.544351	0.27743	0.00012797	0.042361	1.954E-05	0.31979	0.00014751	461.27930698289913	40.506	0.54761	40.606	40.288	40.835	0.099403	-0.028882	-5.5608E-05	NaN	41.956	37	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	602380			25614	6135	14592	14593							0.08090081514046688
LPRPAVQI	8	Unmodified	_LPRPAVQI_					0	0	0			REV__ENST00000560869.5_2_14:103601959-103602337:+|nuORF	REV__ENST00000560869.5_2_14:103601959-103602337:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.28179931640625	2	447.281995	892.549437	0.15985	7.1496E-05	-0.19691	-8.8075E-05	-0.037066	-1.6579E-05	447.2818228425065	38.559	2.299	38.65	38.042	40.341	0.090881					175	82	3	0	0	0	0.082568	1	8042	8042		63.563	0	1	734590	+		25615	22299	14593	14594	32126	32126					0.098863853766602
LPRPAVQI	8	Unmodified	_LPRPAVQI_					0	0	0			REV__ENST00000560869.5_2_14:103601959-103602337:+|nuORF	REV__ENST00000560869.5_2_14:103601959-103602337:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.2818298339844	2	447.281995	892.549437	0.34327	0.00015354	-0.35882	-0.00016049	-0.015545	-6.9528E-06	447.2817743440436	38.526	2.2754	38.624	37.953	40.228	0.097527					150	81	3	0	0	0	0.050494	1	8016	8016		77.984	0	1	706590	+		25616	22299	14593	14594	32127	32127					0.098863853766602
LPRPGVIKTI	10	Unmodified	_LPRPGVIKTI_					0	0	0		nc|ENSG00000075426|P15408-2|FOSL2;nc|ENSG00000075426|P15408-3|FOSL2;ENSG00000075426|ENST00000264716|FOSL2	nc|ENSG00000075426|P15408-2|FOSL2	nc|ENSG00000075426|P15408-2|FOSL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.3587036132812	2	547.358234	1092.70191	0.50574	0.00027682	0.31907	0.00017465	0.82481	0.00045147	547.3583175437988	41.604	0.55647	41.694	41.273	41.829	0.090252					32	24	2	0	0	0	0.12628	1	8985	8985		42.312	9.5268	1	2003100			25617	12588	14594	14595	32128	32128					0.15927161053423333
LPRPGVIKTI	10	Unmodified	_LPRPGVIKTI_					0	0	0		nc|ENSG00000075426|P15408-2|FOSL2;nc|ENSG00000075426|P15408-3|FOSL2;ENSG00000075426|ENST00000264716|FOSL2	nc|ENSG00000075426|P15408-2|FOSL2	nc|ENSG00000075426|P15408-2|FOSL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.3585205078125	2	547.358234	1092.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.519	1	41.616	41.116	42.116	0.096626								0	0	0	0.062986	1	8948	8948		61.09	21.14	1				25618	12588	14594	14595	32129	32129					0.15927161053423333
LPRPHASIMF	10	Oxidation (M)	_LPRPHASIM(Oxidation (M))F_		LPRPHASIM(1)F		LPRPHASIM(72)F	0	0	1		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.K592Rfs*19|1|0.3|ENSG00000135829|chr1:182874910-182874910|A/-|frameshift_variant	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.8164672851562	2	592.815876	1183.6172	0.40475	0.00023994	0.21433	0.00012706	0.61908	0.000367	592.8160668447566	43.543	0.69806	43.543	43.206	43.904	0					72	25	4	0	0	0	0.11373	1	9545	9545		71.708	53.335	1	2052500			25619	3909	14595	14596	32130	32130		489			0.03273467245139727
LPRPHASIMF	10	Oxidation (M)	_LPRPHASIM(Oxidation (M))F_		LPRPHASIM(1)F		LPRPHASIM(59)F	0	0	1		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.K592Rfs*19|1|0.3|ENSG00000135829|chr1:182874910-182874910|A/-|frameshift_variant	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.8167114257812	2	592.815876	1183.6172	0.40682	0.00024117	0.13647	8.0901E-05	0.54329	0.00032207	592.8160012912874	43.322	1.0482	43.406	42.896	43.944	0.083992					95	38	3	0	0	0	0.16799	1	9441	9441		59.368	44.963	1	1862100			25620	3909	14595	14596	32131	32131		489			0.03273467245139727
LPRPHASIMF	10	Oxidation (M)	_LPRPHASIM(Oxidation (M))F_					0	0	1		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.K592Rfs*19|1|0.3|ENSG00000135829|chr1:182874910-182874910|A/-|frameshift_variant	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	592.815876	1183.6172	0.57738	0.00034228	-0.066165	-3.9224E-05	0.51121	0.00030305	592.8158803568845	43.278	1.0923	43.356	42.883	43.975	0.077515	-0.079209	-0.0001895	NaN	63.227	99	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2067300			25621	3909	14595	14596				489			0.03273467245139727
LPRPIPGLRVV	11	Unmodified	_LPRPIPGLRVV_					0	0	0		ENST00000269321.11_1_17:79825624-79826158:-|nuORF	ENST00000269321.11_1_17:79825624-79826158:-|nuORF	ENST00000269321.11_1_17:79825624-79826158:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.2677001953125	3	406.267797	1215.78156	0.056629	2.3006E-05	-0.21328	-8.6649E-05	-0.15665	-6.3643E-05	406.26764653610127	57.215	0.66785	57.215	56.937	57.605	0					76	24	4	0	0	0	0.34542	2	13779	13779;13827		10.315	5.5993	1	1418200			25622	9076	14596	14597	32132;32133	32132					0.18230227727417514
LPRPIPGLRVV	11	Unmodified	_LPRPIPGLRVV_					0	0	0		ENST00000269321.11_1_17:79825624-79826158:-|nuORF	ENST00000269321.11_1_17:79825624-79826158:-|nuORF	ENST00000269321.11_1_17:79825624-79826158:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.267578125	3	406.267797	1215.78156	-0.055355	-2.2489E-05	-0.10445	-4.2434E-05	-0.1598	-6.4923E-05	406.26766772632084	57.124	0.57663	57.203	56.935	57.511	0.078671					60	20	4	0	0	0	0.34542	2	13745	13745;13796		10.315	5.9091	1	1359000			25623	9076	14596	14597	32134;32135	32134					0.18230227727417514
LPRPIPGLRVV	11	Unmodified	_LPRPIPGLRVV_					0	0	0		ENST00000269321.11_1_17:79825624-79826158:-|nuORF	ENST00000269321.11_1_17:79825624-79826158:-|nuORF	ENST00000269321.11_1_17:79825624-79826158:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.26751708984375	3	406.267797	1215.78156	-0.15084	-6.1283E-05	-0.12341	-5.0137E-05	-0.27425	-0.00011142	406.26768338480684	57.239	0.76728	57.222	56.922	57.69	-0.0172					65	27	3	0	0	0	0.37965	2	13777	13777;13821		7.4771	3.89	1	1294800			25624	9076	14596	14597	32136;32137	32136					0.18230227727417514
LPRPPGAL	8	Unmodified	_LPRPPGAL_					0	0	0		nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000545049.1_1_12:2977686-2983239:-|nuORF	nc|ENSG00000111206|Q08050-2|FOXM1	nc|ENSG00000111206|Q08050-2|FOXM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2240295410156	2	410.755613	819.496673	0.16001	6.5723E-05	0.39768	0.00016335	0.55768	0.00022907	410.7555760269994	32.187	1.1657	32.187	31.925	33.091	0					72	41	3	0	0	0	0.32778	1	6025	6025		20.871	0	1	285410			25625	2351	14597	14598	32138	32138					0.07970427313853179
LPRPPGAL	8	Unmodified	_LPRPPGAL_					0	0	0		nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000545049.1_1_12:2977686-2983239:-|nuORF	nc|ENSG00000111206|Q08050-2|FOXM1	nc|ENSG00000111206|Q08050-2|FOXM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	410.755613	819.496673	0.15342	6.3019E-05	0.43624	0.00017919	0.58966	0.00024221	410.7555854834962	32.147	0.86205	32.188	31.916	32.778	0.040989	0.00028784	1.5236E-05	NaN	20.871	65	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312320			25626	2351	14597	14598							0.07970427313853179
LPRPPMLLAL	10	Oxidation (M)	_LPRPPM(Oxidation (M))LLAL_		LPRPPM(1)LLAL		LPRPPM(50)LLAL	0	0	1		ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;ENSG00000049860|ENST00000261416|HEXB	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.8468017578125	2	568.846645	1135.67874	0.30792	0.00017516	0.038376	2.183E-05	0.3463	0.00019699	568.8466669616422	68.759	2.456	68.759	67.647	70.103	0					241	89	5	0	0	0	0.091471	5	17346	17256;17301;17346;17390;17442		49.933	23.665	1	6360500			25627	657	14598	14599	32139;32140;32141;32142;32143	32141		78			0.11632398944425404
LPRPPMLLAL	10	Oxidation (M)	_LPRPPM(Oxidation (M))LLAL_		LPRPPM(1)LLAL		LPRPPM(42)LLAL	0	0	1		ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;ENSG00000049860|ENST00000261416|HEXB	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8469848632812	2	568.846645	1135.67874	0.39574	0.00022511	-0.11447	-6.5116E-05	0.28127	0.00016	568.8466190452993	68.676	2.682	68.748	67.681	70.363	0.071938					267	96	5	0	0	0	0.12843	5	17229	17229;17277;17323;17373;17423		41.84	17.819	1	6548000			25628	657	14598	14599	32144;32145;32146;32147;32148	32144		78			0.11632398944425404
LPRPPMLLAL	10	Oxidation (M)	_LPRPPM(Oxidation (M))LLAL_		LPRPPM(1)LLAL		LPRPPM(42)LLAL	0	0	1		ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;ENSG00000049860|ENST00000261416|HEXB	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	ENST00000515528.1_1_5:73981085-73985366:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.846923828125	2	568.846645	1135.67874	0.28923	0.00016453	-0.018966	-1.0789E-05	0.27026	0.00015374	568.846685821486	68.828	2.6353	68.808	67.616	70.251	-0.01915					250	94	5	0	0	0	0.12843	5	17254	17254;17297;17341;17389;17444		41.84	17.819	1	6199800			25629	657	14598	14599	32149;32150;32151;32152;32153	32149		78			0.11632398944425404
LPRPPNVL	8	Unmodified	_LPRPPNVL_					0	0	0		ENST00000491595.1_1_7:73624266-73629245:+|nuORF;nc|ENSG00000182257|Q9NV39|PRR34	ENST00000491595.1_1_7:73624266-73629245:+|nuORF	ENST00000491595.1_1_7:73624266-73629245:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.7377624511719	2	453.281995	904.549437	0.3581	0.00016232	0.0044755	2.0287E-06	0.36258	0.00016435	453.2818749632122	45.716	0.89819	45.781	45.248	46.146	0.065048					69	32	3	0	0	0	0.26527	1	10172	10172		36.044	1.9418	1	850500			25630	11183	14599	14600	32154	32154					0.09334385376666887
LPRPPPSAV	9	Unmodified	_LPRPPPSAV_					0	0	0		nc|ENSG00000187642|Q5SV97-3|PERM1;ENSG00000187642|ENST00000433179|PERM1	nc|ENSG00000187642|Q5SV97-3|PERM1	nc|ENSG00000187642|Q5SV97-3|PERM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2792663574219	2	467.279452	932.544351	0.1844	8.6169E-05	0.12524	5.8522E-05	0.30964	0.00014469	467.2794209941955	35.749	1.0094	35.836	35.263	36.272	0.086246					66	36	3	0	0	0	0.047483	1	7145	7145		53.833	19.431	1	374650			25631	7698	14600	14601	32155	32155					0.07538081514042005
LPRPPPSAV	9	Unmodified	_LPRPPPSAV_					0	0	0		nc|ENSG00000187642|Q5SV97-3|PERM1;ENSG00000187642|ENST00000433179|PERM1	nc|ENSG00000187642|Q5SV97-3|PERM1	nc|ENSG00000187642|Q5SV97-3|PERM1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	467.279452	932.544351	0.10959	5.1207E-05	-0.098754	-4.6146E-05	0.010831	5.0612E-06	467.279357902058	35.879	1.1371	35.879	35.17	36.307	0	0.056904	-0.00019993	NaN	53.833	74	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378850			25632	7698	14600	14601							0.07538081514042005
LPRPPPSAV	9	Unmodified	_LPRPPPSAV_					0	0	0		nc|ENSG00000187642|Q5SV97-3|PERM1;ENSG00000187642|ENST00000433179|PERM1	nc|ENSG00000187642|Q5SV97-3|PERM1	nc|ENSG00000187642|Q5SV97-3|PERM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	467.279452	932.544351	0.14611	6.8275E-05	0.25178	0.00011765	0.39789	0.00018593	467.27945924191505	35.67	0.74496	35.752	35.488	36.233	0.082355	-0.070168	0.00012767	NaN	53.833	46	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347210			25633	7698	14600	14601							0.07538081514042005
LPRPPRGHL	9	Unmodified	_LPRPPRGHL_					0	0	0		ENST00000263093.6_2_19:59010515-59011725:-|nuORF	ENST00000263093.6_2_19:59010515-59011725:-|nuORF	ENST00000263093.6_2_19:59010515-59011725:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8004150390625	2	521.817067	1041.61958	0.28178	0.00014704	-1.6101	-0.00084016	-1.3283	-0.00069313	521.8162097201074	59.587	0.8697	59.587	59.107	59.977	0					47	30	2	0	0	0	0.23775	1	14452	14452		18.135	4.2289	1	1058300			25634	8997	14601	14602	32156	32156					0.10043683765138667
LPRPPRWQ	8	Unmodified	_LPRPPRWQ_					0	0	0		ENST00000416769.1_1_1:22352083-22356806:+|nuORF	ENST00000416769.1_1_1:22352083-22356806:+|nuORF	ENST00000416769.1_1_1:22352083-22356806:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.275634765625	2	525.303793	1048.59303	0.33011	0.00017341	-1.6944	-0.00089008	-1.3643	-0.00071667	525.302997167767	31.572	0.24894	31.572	31.361	31.61	0					17	8	3	0	0	0	0.3366	1	5879	5879		18.135	2.2878	1	304720			25635	10323	14602	14603	32157	32157					0.07067994873796124
LPRPPRWQ	8	Unmodified	_LPRPPRWQ_					0	0	0		ENST00000416769.1_1_1:22352083-22356806:+|nuORF	ENST00000416769.1_1_1:22352083-22356806:+|nuORF	ENST00000416769.1_1_1:22352083-22356806:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2761840820312	2	525.303793	1048.59303	0.48964	0.00025721	-1.4387	-0.00075578	-0.9491	-0.00049857	525.3026349442656	31.53	0.22235	31.571	31.365	31.587	0.040991					14	7	2	0	0	0	0.34092	1	5848	5848		13.508	1.8676	1	426590			25636	10323	14602	14603	32158	32158					0.07067994873796124
LPRPQAAI	8	Unmodified	_LPRPQAAI_					0	0	0		ENST00000560583.5_1_19:55899571-55899697:+|nuORF	ENST00000560583.5_1_19:55899571-55899697:+|nuORF	ENST00000560583.5_1_19:55899571-55899697:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.5105895996094	2	433.266345	864.518136	-0.1089	-4.7183E-05	-0.55087	-0.00023867	-0.65977	-0.00028586	433.26605579482657	40.129	0.4739	40.129	39.914	40.388	0					26	16	2	0	0	0	0.29855	1	8532	8532		32.117	0	1	97934			25637	11900	14603	14604	32159	32159					0.08045812342538738
LPRPQAAI	8	Unmodified	_LPRPQAAI_					0	0	0		ENST00000560583.5_1_19:55899571-55899697:+|nuORF	ENST00000560583.5_1_19:55899571-55899697:+|nuORF	ENST00000560583.5_1_19:55899571-55899697:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.5106506347656	2	433.266345	864.518136	-0.0027624	-1.1968E-06	-0.61465	-0.00026631	-0.61741	-0.0002675	433.26606757233554	40.005	0.38623	40.105	39.844	40.23	0.099407					21	13	2	0	0	0	0.29855	1	8491	8491		32.117	0	1	90145			25638	11900	14603	14604	32160	32160					0.08045812342538738
LPRPQAAI	8	Unmodified	_LPRPQAAI_					0	0	0		ENST00000560583.5_1_19:55899571-55899697:+|nuORF	ENST00000560583.5_1_19:55899571-55899697:+|nuORF	ENST00000560583.5_1_19:55899571-55899697:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	433.266345	864.518136	0.18932	8.2026E-05	-0.41203	-0.00017852	-0.22271	-9.6494E-05	433.2661354689363	39.987	0.39674	40.08	39.858	40.254	0.09267	-0.024454	8.5685E-05	NaN	32.117	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132530			25639	11900	14603	14604							0.08045812342538738
LPRPQGITV	9	Unmodified	_LPRPQGITV_					0	0	0		nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7980651855469	2	490.798009	979.581465	0.57592	0.00028266	-0.15212	-7.4659E-05	0.4238	0.000208	490.7978058898397	44.674	0.89987	44.674	44.306	45.206	0					56	32	2	0	0	0	0.064268	1	9904	9904		47.594	12.662	1	1057200			25640	4813	14604	14605	32161	32161					0.09085753059798662
LPRPQGITV	9	Unmodified	_LPRPQGITV_					0	0	0		nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7981872558594	2	490.798009	979.581465	0.50703	0.00024885	-1.2518	-0.00061438	-0.74476	-0.00036553	490.7977793835439	44.581	1.1168	44.65	44.174	45.291	0.068569					87	40	4	0	0	0	0.051692	1	9864	9864		72.968	15.246	1	1103800			25641	4813	14604	14605	32162	32162					0.09085753059798662
LPRPQGITV	9	Unmodified	_LPRPQGITV_					0	0	0		nc|ENSG00000148426|Q86WR7-2|PROSER2;ENSG00000148426|ENST00000277570|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	nc|ENSG00000148426|Q86WR7-2|PROSER2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7979431152344	2	490.798009	979.581465	0.45747	0.00022453	-0.15403	-7.5597E-05	0.30345	0.00014893	490.79783617066107	44.598	0.98137	44.673	44.148	45.129	0.075047					66	35	2	0	0	0	0.018449	1	9836	9836		66.457	18.708	1	1196000			25642	4813	14604	14605	32163	32163					0.09085753059798662
LPRPTPQASF	10	Unmodified	_LPRPTPQASF_					0	0	0		ENSG00000153071|ENST00000320816|DAB2;nc|ENSG00000153071|P98082-3|DAB2	ENSG00000153071|ENST00000320816|DAB2	ENSG00000153071|ENST00000320816|DAB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3060913085938	2	557.306198	1112.59784	0.28838	0.00016072	-1.0337	-0.00057609	-0.74532	-0.00041537	557.3051748977454	43.335	1.2527	43.335	42.652	43.904	0					123	45	4	0	0	0	0.018301	1	9472	9472		85.764	45.807	1	4843200			25643	5058	14605	14606	32164	32164					0.04604834225892773
LPRPTPQASF	10	Unmodified	_LPRPTPQASF_					0	0	0		ENSG00000153071|ENST00000320816|DAB2;nc|ENSG00000153071|P98082-3|DAB2	ENSG00000153071|ENST00000320816|DAB2	ENSG00000153071|ENST00000320816|DAB2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	557.306198	1112.59784	0.46601	0.00025971	-1.9016	-0.0010598	-1.4356	-0.00080005	557.3050633967953	43.127	1.0939	43.204	42.668	43.762	0.077515	-0.045279	-0.00019579	NaN	85.764	99	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4739000			25644	5058	14605	14606							0.04604834225892773
LPRPTSLLS	9	Unmodified	_LPRPTSLLS_					0	0	0			REV__ENST00000555923.1_1_14:81955203-81955461:-|nuORF	REV__ENST00000555923.1_1_14:81955203-81955461:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2977294921875	2	492.297842	982.581131	1.0215	0.0005029	-1.2005	-0.00059103	-0.17901	-8.8128E-05	492.2973840611206	56.032	0.88371	56.032	55.46	56.344	0					55	31	3	0	0	0	0.079752	1	13453	13453		41.84	1.8899	1	2005800	+		25645	22252	14606	14607	32165	32165					0.08914333339953373
LPRPTSTPGAV	11	Unmodified	_LPRPTSTPGAV_					0	0	0		ENST00000263269.3_1_19:48947279-48947732:+|nuORF	ENST00000263269.3_1_19:48947279-48947732:+|nuORF	ENST00000263269.3_1_19:48947279-48947732:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.2849731445312	2	548.31148	1094.60841	0.34184	0.00018743	0.14913	8.177E-05	0.49097	0.0002692	548.3112877283295	22.07	0.40723	22.021	21.855	22.262	-0.049377					23	14	2	0	0	0	0.33175	1	3076	3076		4.897	0.95262	1	76816			25646	9004	14607	14608	32166	32166					0.06488816880323611
LPRPVPQNL	9	Unmodified	_LPRPVPQNL_					0	0	0		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.311767578125	2	517.311284	1032.60801	0.40111	0.0002075	-0.15941	-8.2462E-05	0.2417	0.00012503	517.3111727701695	44.27	1.0055	44.338	43.645	44.651	0.068569					73	37	3	0	0	0	0.019245	1	9805	9805		65.235	35.01	1	976090			25647	438	14608	14609	32167	32167					0.09301441951129163
LPRPVPQNL	9	Unmodified	_LPRPVPQNL_					0	0	0		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.3118896484375	2	517.311284	1032.60801	0.26351	0.00013631	-0.1413	-7.3095E-05	0.12221	6.322E-05	517.3112098743591	44.227	0.94071	44.302	43.782	44.723	0.075047					73	34	3	0	0	0	0.014888	2	9776	9776;9839		71.922	37.82	1	1016400			25648	438	14608	14609	32168;32169	32168					0.09301441951129163
LPRPVPQNL	9	Unmodified	_LPRPVPQNL_					0	0	0		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	517.311284	1032.60801	0.42363	0.00021915	-0.17293	-8.9457E-05	0.2507	0.00012969	517.3112466369703	44.37	0.7794	44.37	43.904	44.684	0	0.033317	-1.6773E-05	NaN	71.922	52	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1421900			25649	438	14608	14609							0.09301441951129163
LPRPVRGL	8	Unmodified	_LPRPVRGL_					0	0	0		DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant;ENSG00000197653|ENST00000673944|DNAH10;nc|ENSG00000197653|Q8IVF4|DNAH10	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.7945251464844	2	454.295436	906.57632	0.25183	0.00011441	-1.5645	-0.00071076	-1.3127	-0.00059636	454.29534378202345	52.964	2.7439	52.964	52.63	55.374	0					251	101	4	0	0	0	0.38703	1	12645	12645		20.871	0	1	7242100			25650	267	14609	14610	32170	32170					0.11929493987850037
LPRPVRGL	8	Unmodified	_LPRPVRGL_					0	0	0		DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant;ENSG00000197653|ENST00000673944|DNAH10;nc|ENSG00000197653|Q8IVF4|DNAH10	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.79461669921875	2	454.295436	906.57632	0.38717	0.00017589	-1.6719	-0.00075955	-1.2848	-0.00058366	454.2952786152763	52.879	3.1282	52.93	52.603	55.731	0.050575					232	116	3	0	0	0	0.421	1	12563	12563		15.768	0	1	7766000			25651	267	14609	14610	32171	32171					0.11929493987850037
LPRPVRGL	8	Unmodified	_LPRPVRGL_					0	0	0		DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant;ENSG00000197653|ENST00000673944|DNAH10;nc|ENSG00000197653|Q8IVF4|DNAH10	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.79443359375	2	454.295436	906.57632	0.23328	0.00010598	-1.6837	-0.00076491	-1.4504	-0.00065893	454.2953576360948	53.168	2.6396	53.158	52.631	55.27	-0.0096054					237	97	4	0	0	0	0.32313	2	12731	12731;12794		28.173	0	1	6955500			25652	267	14609	14610	32172;32173	32172					0.11929493987850037
LPRQDTTSI	9	Unmodified	_LPRQDTTSI_					0	0	0		ENSG00000164414|ENST00000369552|SLC35A1;nc|ENSG00000164414|P78382-2|SLC35A1	ENSG00000164414|ENST00000369552|SLC35A1	ENSG00000164414|ENST00000369552|SLC35A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2906494140625	2	515.780013	1029.54547	0.47628	0.00024566	-0.51038	-0.00026324	-0.034094	-1.7585E-05	515.7797965812459	29.886	0.62287	29.886	29.441	30.064	0					24	21	2	0	0	0	0.13748	1	5409	5409		32.786	3.7041	1	232280			25653	5842	14610	14611	32174	32174					0.03188251092274186
LPRQDTTSI	9	Unmodified	_LPRQDTTSI_					0	0	0		ENSG00000164414|ENST00000369552|SLC35A1;nc|ENSG00000164414|P78382-2|SLC35A1	ENSG00000164414|ENST00000369552|SLC35A1	ENSG00000164414|ENST00000369552|SLC35A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2904663085938	2	515.780013	1029.54547	0.30498	0.0001573	-0.45452	-0.00023443	-0.14955	-7.7134E-05	515.7797177471683	29.878	0.64474	29.89	29.443	30.088	0.012266					29	21	2	0	0	0	0.099099	1	5418	5418		33.445	15.072	1	173910			25654	5842	14610	14611	32175	32175					0.03188251092274186
LPRQDTTSI	9	Unmodified	_LPRQDTTSI_					0	0	0		ENSG00000164414|ENST00000369552|SLC35A1;nc|ENSG00000164414|P78382-2|SLC35A1	ENSG00000164414|ENST00000369552|SLC35A1	ENSG00000164414|ENST00000369552|SLC35A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	515.780013	1029.54547	0.47628	0.00024566	-0.51038	-0.00026324	-0.034094	-1.7585E-05	515.7797965812459	29.886	0.62287	29.886	29.441	30.064	0	-0.0040788	-0.00026003	NaN	33.445	24	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232280			25655	5842	14610	14611							0.03188251092274186
LPRQDTTSI	9	Unmodified	_LPRQDTTSI_					0	0	0		ENSG00000164414|ENST00000369552|SLC35A1;nc|ENSG00000164414|P78382-2|SLC35A1	ENSG00000164414|ENST00000369552|SLC35A1	ENSG00000164414|ENST00000369552|SLC35A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	515.780013	1029.54547	-0.041731	-2.1524E-05	0.25571	0.00013189	0.21398	0.00011037	515.7801945548871	29.88	0.58193	29.893	29.564	30.146	0.013474	0.0034041	0.00053023	NaN	33.445	23	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215700			25656	5842	14610	14611							0.03188251092274186
LPRQFNVIV	9	Unmodified	_LPRQFNVIV_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3272094726562	2	543.326934	1084.63931	0.5176	0.00028123	-0.068528	-3.7233E-05	0.44907	0.00024399	543.3267882975659	57.6	1.0526	57.6	57.19	58.243	0					89	37	3	0	0	0	0.07432	1	13918	13918		43.858	15.371	1	2404100			25657	3536	14611	14612	32176	32176					0.10038014985207155
LPRQFNVIV	9	Unmodified	_LPRQFNVIV_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3272094726562	2	543.326934	1084.63931	0.58175	0.00031608	0.0085415	4.6408E-06	0.5903	0.00032072	543.3268658319922	57.44	1.0565	57.525	57.132	58.189	0.085617					77	38	3	0	0	0	0.027237	1	13869	13869		61.357	32.276	1	2251200			25658	3536	14611	14612	32177	32177					0.10038014985207155
LPRQFNVIV	9	Unmodified	_LPRQFNVIV_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3270874023438	2	543.326934	1084.63931	0.45878	0.00024927	0.057639	3.1317E-05	0.51642	0.00028059	543.326857600286	57.624	0.99589	57.607	57.17	58.166	-0.0172					75	36	3	0	0	0	0.10197	1	13884	13884		37.974	9.4872	1	2543900			25659	3536	14611	14612	32178	32178					0.10038014985207155
LPRQKSQI	8	Unmodified	_LPRQKSQI_					0	0	0			REV__ENST00000568710.1_1_16:67585-84971:-|nuORF	REV__ENST00000568710.1_1_16:67585-84971:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.5942077636719	2	485.295633	968.576714	0.30269	0.00014689	-0.48549	-0.00023561	-0.1828	-8.8712E-05	485.29530275405097	24.029	0.62524	23.99	23.681	24.306	-0.038927					35	21	2	0	0	0	0.33293	1	3651	3651		20.454	5.6154	1	81254	+		25660	22400	14612	14613	32179	32179					0.09116868917044485
LPRQLVDL	8	Unmodified	_LPRQLVDL_					0	0	0			REV__nc|ENSG00000160145|O60229-2|KALRN	REV__nc|ENSG00000160145|O60229-2|KALRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7765197753906	2	477.292559	952.570566	0.34062	0.00016258	-0.81132	-0.00038724	-0.4707	-0.00022466	477.29223192047186	50.247	0.46854	50.247	50.05	50.518	0					26	16	2	0	0	0	0.32886	1	11585	11585		21.747	1.293	1	171260	+		25661	16880	14613	14614	32180	32180					0.09238350685495789
LPRQPPMSL	9	Oxidation (M)	_LPRQPPM(Oxidation (M))SL_		LPRQPPM(1)SL		LPRQPPM(160)SL	0	0	1		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7900390625	2	527.789327	1053.5641	0.82487	0.00043536	-0.24245	-0.00012796	0.58243	0.0003074	527.7895662805433	37.113	1.4741	37.113	36.644	38.118	0					148	52	5	0	0	0	1.2283E-05	3	7618	7526;7575;7618		155.03	89.791	1	5511000			25662	7014	14614	14615	32181;32182;32183	32183		789			0.03946089462488089
LPRQPPMSL	9	Oxidation (M)	_LPRQPPM(Oxidation (M))SL_		LPRQPPM(1)SL		LPRQPPM(130)SL	0	0	1		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7899169921875	2	527.789327	1053.5641	0.87417	0.00046138	0.28125	0.00014844	1.1554	0.00060981	527.78938881231	37.54	0.98063	37.54	37.259	38.239	0					67	34	2	0	0	0	0.00045155	1	7763	7763		129.77	79.839	1	4006100			25663	7014	14614	14615	32184	32184		789			0.03946089462488089
LPRQPPMSL	9	Oxidation (M)	_LPRQPPM(Oxidation (M))SL_		LPRQPPM(1)SL		LPRQPPM(130)SL	0	0	1		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7897338867188	2	527.789327	1053.5641	0.51565	0.00027215	0.15921	8.4028E-05	0.67486	0.00035618	527.7898424291302	36.971	1.4418	37.059	36.626	38.068	0.08741					148	52	5	0	0	0	0.00045155	2	7531	7484;7531		129.77	64.537	1	6054900			25664	7014	14614	14615	32185;32186	32186		789			0.03946089462488089
LPRQPPMSL	9	Oxidation (M)	_LPRQPPM(Oxidation (M))SL_		LPRQPPM(1)SL		LPRQPPM(130)SL	0	0	1		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7897338867188	2	527.789327	1053.5641	0.76628	0.00040443	-0.018583	-9.8078E-06	0.7477	0.00039463	527.7896363063065	36.949	1.4268	37.042	36.633	38.06	0.093018					147	52	5	0	0	0	0.00045155	2	7529	7481;7529		129.77	73.595	1	5526000			25665	7014	14614	14615	32187;32188	32188		789			0.03946089462488089
LPRQRLQGP	9	Unmodified	_LPRQRLQGP_					0	0	0		ENST00000551245.5_1_12:49717808-49719298:+|nuORF	ENST00000551245.5_1_12:49717808-49719298:+|nuORF	ENST00000551245.5_1_12:49717808-49719298:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.820068359375	2	532.819807	1063.62506	0.21252	0.00011324	0.10064	5.3621E-05	0.31316	0.00016686	532.8198252105742	28.561	0.45197	28.557	28.333	28.785	-0.0042572					25	15	2	0	0	0	0.31038	1	5025	5025		7.2892	0	1	226090			25666	11803	14615	14616	32189	32189					0.0957936255695131
LPRQSQITV	9	Unmodified	_LPRQSQITV_					0	0	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.30615234375	2	521.306198	1040.59784	0.5493	0.00028635	-0.0060731	-3.1659E-06	0.54322	0.00028319	521.3060092472051	36.238	0.53037	36.32	36.171	36.701	0.082355					43	18	3	0	0	0	0.1558	1	7338	7338		34.932	7.7088	1	1175100			25667	12829	14616	14617	32190	32190					0.07916834225875391
LPRQSQITV	9	Unmodified	_LPRQSQITV_					0	0	0		nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	nc|ENSG00000168386|Q4L180-6|FILIP1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.3064575195312	2	521.306198	1040.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.361	1	36.448	35.948	36.948	0.08625								0	0	0	0.11882	1	7372	7372		41.956	1.9982	1				25668	12829	14616	14617	32191	32191					0.07916834225875391
LPRRAAVNIEF	11	Unmodified	_LPRRAAVNIEF_					0	0	0		nc|ENSG00000160179|P45844-7|ABCG1;nc|ENSG00000160179|P45844-6|ABCG1;nc|ENSG00000160179|P45844-5|ABCG1;ENSG00000160179|ENST00000398449|ABCG1;nc|ENSG00000160179|P45844-3|ABCG1;nc|ENSG00000160179|P45844-2|ABCG1;nc|ENSG00000160179|P45844|ABCG1	nc|ENSG00000160179|P45844-7|ABCG1	nc|ENSG00000160179|P45844-7|ABCG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	643.3726196289062	2	643.372404	1284.73025	0.20468	0.00013168	0.37329	0.00024016	0.57797	0.00037185	643.3726374652227	45.897	0.30669	45.957	45.844	46.15	0.059834					17	10	2	0	0	0	0.33432	1	10303	10303		18.373	14.184	1	311630			25669	5441	14617	14618	32192	32192					0.09927858962691971
LPRRAAVNIEF	11	Unmodified	_LPRRAAVNIEF_					0	0	0		nc|ENSG00000160179|P45844-7|ABCG1;nc|ENSG00000160179|P45844-6|ABCG1;nc|ENSG00000160179|P45844-5|ABCG1;ENSG00000160179|ENST00000398449|ABCG1;nc|ENSG00000160179|P45844-3|ABCG1;nc|ENSG00000160179|P45844-2|ABCG1;nc|ENSG00000160179|P45844|ABCG1	nc|ENSG00000160179|P45844-7|ABCG1	nc|ENSG00000160179|P45844-7|ABCG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	643.372404	1284.73025	0.43034	0.00027687	0.030426	1.9575E-05	0.46077	0.00029644	643.3722142482216	46.054	0.27696	46.054	45.945	46.222	0	0.066704	-0.0002244	NaN	18.373	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203300			25670	5441	14617	14618							0.09927858962691971
LPRRAAVNIEF	11	Unmodified	_LPRRAAVNIEF_					0	0	0		nc|ENSG00000160179|P45844-7|ABCG1;nc|ENSG00000160179|P45844-6|ABCG1;nc|ENSG00000160179|P45844-5|ABCG1;ENSG00000160179|ENST00000398449|ABCG1;nc|ENSG00000160179|P45844-3|ABCG1;nc|ENSG00000160179|P45844-2|ABCG1;nc|ENSG00000160179|P45844|ABCG1	nc|ENSG00000160179|P45844-7|ABCG1	nc|ENSG00000160179|P45844-7|ABCG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	643.372404	1284.73025	0.62051	0.00039922	0.10853	6.9822E-05	0.72903	0.00046904	643.3724415285915	45.887	0.33501	45.952	45.811	46.146	0.065048	-0.035676	-0.0001239	NaN	18.373	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249520			25671	5441	14617	14618							0.09927858962691971
LPRRAPPVSM	10	Oxidation (M)	_LPRRAPPVSM(Oxidation (M))_		LPRRAPPVSM(1)		LPRRAPPVSM(56)	0	0	1		nc|ENSG00000145824|O95715|CXCL14	nc|ENSG00000145824|O95715|CXCL14	nc|ENSG00000145824|O95715|CXCL14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3214111328125	2	570.321325	1138.6281	0.031825	1.815E-05	-0.12869	-7.3393E-05	-0.096863	-5.5243E-05	570.3213611006	23.215	0.9183	23.215	22.815	23.734	0					88	31	4	0	0	0	0.066034	1	3406	3406		55.503	42.46	1	716610			25672	12744	14618	14619	32193	32193		976			0.06432869619425219
LPRRAPPVSM	10	Oxidation (M)	_LPRRAPPVSM(Oxidation (M))_		LPRRAPPVSM(1)		LPRRAPPVSM(40)	0	0	1		nc|ENSG00000145824|O95715|CXCL14	nc|ENSG00000145824|O95715|CXCL14	nc|ENSG00000145824|O95715|CXCL14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3213500976562	2	570.321325	1138.6281	0.19687	0.00011228	-0.22217	-0.00012671	-0.025303	-1.4431E-05	570.3212244786337	23.312	1.0156	23.225	22.79	23.806	-0.087608					98	35	4	0	0	0	0.13784	2	3377	3377;3425		40.239	30.856	1	793140			25673	12744	14618	14619	32194;32195	32194		976			0.06432869619425219
LPRRAPPVSM	10	Oxidation (M)	_LPRRAPPVSM(Oxidation (M))_		LPRRAPPVSM(1)		LPRRAPPVSM(46)	0	0	1		nc|ENSG00000145824|O95715|CXCL14	nc|ENSG00000145824|O95715|CXCL14	nc|ENSG00000145824|O95715|CXCL14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.3214111328125	2	570.321325	1138.6281	0.23175	0.00013217	-0.26118	-0.00014896	-0.029434	-1.6787E-05	570.3212490074126	23.316	1.0049	23.271	22.898	23.903	-0.044867					94	35	4	0	0	0	0.11062	1	3425	3425		45.74	32.697	1	711260			25674	12744	14618	14619	32196	32196		976			0.06432869619425219
LPRREGYEF	9	Unmodified	_LPRREGYEF_					0	0	0		nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.8014526367188	2	583.80128	1165.58801	0.17497	0.00010215	0.48139	0.00028103	0.65636	0.00038318	583.801511421788	33.213	0.5613	33.213	32.895	33.456	0					45	19	3	0	0	0	0.22215	1	6400	6400		20.415	10.341	1	322260			25675	3106	14619	14620	32197	32197					0.011836462205110365
LPRREGYEF	9	Unmodified	_LPRREGYEF_					0	0	0		nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.8014526367188	2	583.80128	1165.58801	0.24713	0.00014428	0.28184	0.00016454	0.52898	0.00030882	583.8013551649068	33.059	0.47165	33.113	32.931	33.403	0.054371					38	16	3	0	0	0	0.2719	1	6366	6366		13.042	0	1	499090			25676	3106	14619	14620	32198	32198					0.011836462205110365
LPRREPTV	8	Unmodified	_LPRREPTV_					0	0	0		ENSG00000184967|ENST00000330579|NOC4L;ENST00000535343.5_1_12:132632219-132636084:+|nuORF	ENSG00000184967|ENST00000330579|NOC4L	ENSG00000184967|ENST00000330579|NOC4L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.287841796875	2	484.287808	966.561064	0.30917	0.00014973	0.066293	3.2105E-05	0.37547	0.00018183	484.28771641534627	21.77	0.52365	21.67	21.364	21.888	-0.10034					33	18	2	0	0	0	0.39068	1	2946	2946		20.454	0	1	173660			25677	7487	14620	14621	32199	32199					0.07644582399996125
LPRRGRGG	8	Unmodified	_LPRRGRGG_					0	0	0			REV__nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1	REV__nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7796936035156	2	434.764835	867.515117	-0.87826	-0.00038184	-2.1085	-0.00091671	-2.9868	-0.0012985	434.7666903688746	34.762	1.3097	34.839	34.249	35.559	0.077381					80	46	3	0	0	0	0.4397	1	7032	7032		9.3474	0	1	188500	+		25678	15871	14621	14622	32200	32200					0.07605982008419687
LPRRLAIQL	9	Unmodified	_LPRRLAIQL_					0	0	0		ENST00000466127.1_1_1:226109155-226109632:-|nuORF;ENSG00000143811|ENST00000343818|PYCR2	ENST00000466127.1_1_1:226109155-226109632:-|nuORF	ENST00000466127.1_1_1:226109155-226109632:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3560791015625	2	540.356025	1078.6975	0.73645	0.00039794	-0.4526	-0.00024457	0.28385	0.00015338	540.3557069197537	47.506	0.60998	47.506	47.187	47.797	0					51	21	3	0	0	0	0.14076	1	10796	10796		32.305	0	1	1392600			25679	4549	14622	14623	32201	32201					0.16129696630491708
LPRRLAIQL	9	Unmodified	_LPRRLAIQL_					0	0	0		ENST00000466127.1_1_1:226109155-226109632:-|nuORF;ENSG00000143811|ENST00000343818|PYCR2	ENST00000466127.1_1_1:226109155-226109632:-|nuORF	ENST00000466127.1_1_1:226109155-226109632:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3560180664062	2	540.356025	1078.6975	0.57884	0.00031278	-0.27587	-0.00014907	0.30297	0.00016371	540.3558169254306	47.46	0.55864	47.511	47.216	47.775	0.050442					58	20	4	0	0	0	0.068501	1	10761	10761		46.021	0	1	1375500			25680	4549	14622	14623	32202	32202					0.16129696630491708
LPRRLAIQL	9	Unmodified	_LPRRLAIQL_					0	0	0		ENST00000466127.1_1_1:226109155-226109632:-|nuORF;ENSG00000143811|ENST00000343818|PYCR2	ENST00000466127.1_1_1:226109155-226109632:-|nuORF	ENST00000466127.1_1_1:226109155-226109632:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.35595703125	2	540.356025	1078.6975	1.0159	0.00054897	-0.73418	-0.00039672	0.28176	0.00015225	540.3555359591163	47.448	0.55666	47.491	47.214	47.771	0.04332					49	20	3	0	0	0	0.068501	1	10762	10762		46.021	6.0636	1	1320400			25681	4549	14622	14623	32203	32203					0.16129696630491708
LPRRLQSPQR	10	Unmodified	_LPRRLQSPQR_					0	0	0		ENST00000397030.5_1_13:113751205-113751547:+|nuORF	ENST00000397030.5_1_13:113751205-113751547:+|nuORF	ENST00000397030.5_1_13:113751205-113751547:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.2821960449219	3	417.586189	1249.73674	0.1807	7.5457E-05	-0.83175	-0.00034733	-0.65105	-0.00027187	417.5858641769553	24.333	0.56126	24.26	23.966	24.527	-0.072559					24	18	2	0	0	0	0.32116	1	3648	3648		2.6312	1.5215	1	39861			25682	10130	14623	14624	32204	32204					0.12185796914081948
LPRRLVAL	8	Unmodified	_LPRRLVAL_					0	0	0		chr3:122912069-122912235|516|34.87|0.43|6.34|-|1|SEMA5B,SEMA5B|1	chr3:122912069-122912235|516|34.87|0.43|6.34|-|1|SEMA5B,SEMA5B|1	chr3:122912069-122912235|516|34.87|0.43|6.34|-|1|SEMA5B,SEMA5B|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.27703857421875	2	469.318912	936.62327	-0.21336	-0.00010013	0.28388	0.00013323	0.070519	3.3096E-05	469.31901210480675	39.834	0.48418	39.834	39.54	40.024	0					32	17	2	0	0	0	0.33995	1	8474	8474		15.768	0	1	173370			25683	157	14624	14625	32205	32205					0.15242353538985753
LPRRLVAL	8	Unmodified	_LPRRLVAL_					0	0	0		chr3:122912069-122912235|516|34.87|0.43|6.34|-|1|SEMA5B,SEMA5B|1	chr3:122912069-122912235|516|34.87|0.43|6.34|-|1|SEMA5B,SEMA5B|1	chr3:122912069-122912235|516|34.87|0.43|6.34|-|1|SEMA5B,SEMA5B|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.2769775390625	2	469.318912	936.62327	0.19687	9.2393E-05	0.16296	7.6482E-05	0.35983	0.00016887	469.3189026620367	39.646	0.46609	39.746	39.511	39.977	0.099403					25	16	2	0	0	0	0.33995	1	8412	8412		15.768	0	1	187830			25684	157	14624	14625	32206	32206					0.15242353538985753
LPRRLVGLASL	11	Unmodified	_LPRRLVGLASL_					0	0	0		nc|ENSG00000117305|P35914-3|HMGCL;ENST00000509389.5_1_1:24130838-24151905:-|nuORF;ENST00000513148.1_1_1:24137168-24151905:-|nuORF;nc|ENSG00000117305|P35914-2|HMGCL;ENSG00000117305|ENST00000374490|HMGCL	nc|ENSG00000117305|P35914-3|HMGCL	nc|ENSG00000117305|P35914-3|HMGCL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8878784179688	2	597.88769	1193.76083	0.53546	0.00032014	0.038026	2.2735E-05	0.57348	0.00034288	597.8875844415538	52.418	0.38077	52.468	52.172	52.553	0.050571					19	13	2	0	0	0	0.43508	1	12324	12324		6.6304	0	1	299170			25685	2787	14625	14626	32207	32207					0.17169637347751632
LPRRPLRAF	9	Unmodified	_LPRRPLRAF_					0	0	0		ENSG00000135148|ENST00000412615|TRAFD1;ENST00000550051.5_1_12:112563419-112579054:+|nuORF	ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3538208007812	2	563.353817	1124.69308	0.3571	0.00020117	-0.30182	-0.00017003	0.055279	3.1141E-05	563.3536005108855	30.276	0.67839	30.276	29.97	30.648	0					54	23	3	0	0	0	0.11461	1	5546	5546		36.127	16.87	1	407400			25686	3849	14626	14627	32208	32208					0.13572232207593515
LPRRPLRAF	9	Unmodified	_LPRRPLRAF_					0	0	0		ENSG00000135148|ENST00000412615|TRAFD1;ENST00000550051.5_1_12:112563419-112579054:+|nuORF	ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3538818359375	2	563.353817	1124.69308	0.43864	0.00024711	-0.43649	-0.0002459	0.0021539	1.2134E-06	563.3535528411414	30.261	0.61782	30.289	30.048	30.665	0.027946					51	21	3	0	0	0	0.20626	1	5554	5554		22.736	7.898	1	432440			25687	3849	14626	14627	32209	32209					0.13572232207593515
LPRRPLRAF	9	Unmodified	_LPRRPLRAF_					0	0	0		ENSG00000135148|ENST00000412615|TRAFD1;ENST00000550051.5_1_12:112563419-112579054:+|nuORF	ENSG00000135148|ENST00000412615|TRAFD1	ENSG00000135148|ENST00000412615|TRAFD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.35400390625	2	563.353817	1124.69308	-0.03688	-2.0777E-05	0.17858	0.0001006	0.1417	7.9828E-05	563.353909615744	30.299	0.65223	30.327	30.052	30.704	0.027157					51	22	3	0	0	0	0.07432	1	5544	5544		43.858	24.601	1	351010			25688	3849	14626	14627	32210	32210					0.13572232207593515
LPRRPNDIYV	10	Unmodified	_LPRRPNDIYV_					0	0	0		ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.8513793945312	2	621.851304	1241.68806	-0.0063861	-3.9712E-06	-0.15997	-9.948E-05	-0.16636	-0.00010345	621.8512266643477	38.658	0.95472	38.658	38.118	39.073	0					90	33	4	0	0	0	0.21811	1	8116	8116		28.495	20.339	1	847040			25689	6623	14627	14628	32211	32211					0.07687883554308428
LPRRPNDIYV	10	Unmodified	_LPRRPNDIYV_					0	0	0		ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.85107421875	2	621.851304	1241.68806	0.11127	6.9193E-05	-0.28312	-0.00017606	-0.17185	-0.00010686	621.8511632616602	38.555	0.95203	38.646	38.183	39.135	0.090881					83	34	3	0	0	0	0.19793	1	8093	8093		19.362	11.206	1	811710			25690	6623	14627	14628	32212	32212					0.07687883554308428
LPRRPNDIYV	10	Unmodified	_LPRRPNDIYV_					0	0	0		ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.8511352539062	2	621.851304	1241.68806	0.29821	0.00018544	-0.39484	-0.00024553	-0.096629	-6.0089E-05	621.8510712740373	38.58	0.89615	38.678	38.176	39.072	0.097527					79	31	3	0	0	0	0.1623	1	8075	8075		42.312	27.064	1	822520			25691	6623	14627	14628	32213	32213					0.07687883554308428
LPRSAQPRK	9	Unmodified	_LPRSAQPRK_					0	0	0			REV__nc|ENSG00000198089|A8K8P3-5|SFI1	REV__nc|ENSG00000198089|A8K8P3-5|SFI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7578735351562	2	526.819807	1051.62506	0.49622	0.00026142	-1.4383	-0.00075771	-0.94206	-0.0004963	526.8189589619849	38.264	0.52763	38.361	38.122	38.65	0.097527					30	18	3	0	0	0	0.2451	1	7966	7966		15.847	6.4641	1	318430	+		25692	18797	14628	14629	32214	32214					0.10131362556944623
LPRSESLK	8	Unmodified	_LPRSESLK_					0	0	0		ENSG00000172331|ENST00000344924|BPGM	ENSG00000172331|ENST00000344924|BPGM	ENSG00000172331|ENST00000344924|BPGM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7881164550781	2	465.274367	928.53418	0.24679	0.00011482	2.4072	0.00112	2.654	0.0012348	465.2762551725089	49.85	0.61504	49.871	49.537	50.152	0.020691					53	22	3	0	0	0	0.3671	1	11552	11552		23.148	0	1	491510			25693	6622	14629	14630	32215	32215					0.06705473788804284
LPRSIGNLTQL	11	Unmodified	_LPRSIGNLTQL_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3590698242188	2	606.358962	1210.70337	0.43843	0.00026585	0.13751	8.3381E-05	0.57595	0.00034923	606.3589979187689	57.91	0.92169	57.91	57.578	58.5	0					95	32	4	0	0	0	1.3992E-05	3	13982	13982;14028;14073		120.54	70.989	1	2881300			25694	4807	14630	14631	32216;32217;32218	32216					0.10644750351502807
LPRSIGNLTQL	11	Unmodified	_LPRSIGNLTQL_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3592529296875	2	606.358962	1210.70337	0.5171	0.00031355	0.048108	2.9171E-05	0.56521	0.00034272	606.3589357316837	57.739	0.89646	57.824	57.491	58.387	0.085617					86	32	4	0	0	0	1.8027E-05	3	13916	13916;13961;14015		116.75	67.191	1	2651200			25695	4807	14630	14631	32219;32220;32221	32219					0.10644750351502807
LPRSIGNLTQL	11	Unmodified	_LPRSIGNLTQL_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3593139648438	2	606.358962	1210.70337	0.39969	0.00024236	0.29982	0.0001818	0.69951	0.00042415	606.359108544131	58.001	0.88708	57.984	57.555	58.442	-0.0172					87	32	4	0	0	0	0.00032499	3	13989	13989;14031;14077		106.29	64.333	1	2985200			25696	4807	14630	14631	32222;32223;32224	32222					0.10644750351502807
LPRSLAILSLA	11	Unmodified	_LPRSLAILSLA_					0	0	0		nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97;ENST00000489172.5_1_3:101443520-101477325:+|nuORF	nc|ENSG00000182504|Q8IW35-2|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3692016601562	2	577.368798	1152.72304	0.25764	0.00014875	0.090672	5.2351E-05	0.34831	0.0002011	577.3687735499904	69.342	1.9007	69.408	68.849	70.749	0.066048					189	67	5	0	0	0	0.2056	1	17668	17668		30.703	0.86286	1	8876200			25697	7296	14631	14632	32225	32225					0.1527912636227029
LPRSLAILSLA	11	Unmodified	_LPRSLAILSLA_					0	0	0		nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97;ENST00000489172.5_1_3:101443520-101477325:+|nuORF	nc|ENSG00000182504|Q8IW35-2|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3693237304688	2	577.368798	1152.72304	0.15559	8.983E-05	0.24099	0.00013914	0.39657	0.00022897	577.3688122638291	69.435	1.7151	69.413	68.866	70.581	-0.022087					169	61	5	0	0	0	0.2056	1	17654	17654		30.703	1.2663	1	8834200			25698	7296	14631	14632	32226	32226					0.1527912636227029
LPRSLGKLTKL	11	Unmodified	_LPRSLGKLTKL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.27099609375	3	409.271207	1224.79179	-0.35836	-0.00014667	-0.00033996	-1.3913E-07	-0.3587	-0.0001468	409.2711647831836	39.693	1.1444	39.693	39.189	40.334	0					114	41	4	0	0	0	0.23658	1	8369	8369		46.744	28.404	1	1113100			25699	7211	14632	14633	32227	32227					0.1883879066197096
LPRSLGKLTKL	11	Unmodified	_LPRSLGKLTKL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.92340087890625	3	409.271207	1224.79179	0.059855	2.4497E-05	-0.34696	-0.000142	-0.28711	-0.00011751	409.2710282090213	39.529	1.0732	39.629	39.128	40.201	0.099407					96	38	4	0	0	0	0.31777	1	8287	8287		25.438	14.539	1	1327100			25700	7211	14632	14633	32228	32228					0.1883879066197096
LPRSRFSIRLL	11	Unmodified	_LPRSRFSIRLL_					0	0	0		ENST00000369155.3_1_1:149857423-149857570:-|nuORF	ENST00000369155.3_1_1:149857423-149857570:-|nuORF	ENST00000369155.3_1_1:149857423-149857570:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.27056884765625	3	453.285739	1356.83539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.349	1	75.349	74.849	75.849	0								0	0	0	0.37347	1	19355	19355		3.0723	0	1				25701	9776	14633	14634	32229	32229					0.17124400159127617
LPRSVDVIL	9	Unmodified	_LPRSVDVIL_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3135681152344	2	506.313492	1010.61243	0.4533	0.00022951	-0.3695	-0.00018708	0.083796	4.2427E-05	506.3132678285592	57.29	0.66785	57.29	56.937	57.605	0					58	24	4	0	0	0	0.17277	1	13825	13825		27.629	2.2295	1	1748800			25702	2412	14634	14635	32230	32230					0.1075490637402936
LPRSVDVIL	9	Unmodified	_LPRSVDVIL_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.3134765625	2	506.313492	1010.61243	0.17416	8.8181E-05	-0.0039894	-2.0199E-06	0.17017	8.6161E-05	506.31343778920046	57.311	0.73703	57.294	56.922	57.659	-0.0172					61	26	4	0	0	0	0.12642	1	13808	13808		34.402	10.381	1	1866000			25703	2412	14634	14635	32231	32231					0.1075490637402936
LPRSVDVIL	9	Unmodified	_LPRSVDVIL_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.313492	1010.61243	0.17416	8.8181E-05	-0.0039894	-2.0199E-06	0.17017	8.6161E-05	506.31343778920046	57.311	0.73703	57.294	56.922	57.659	-0.0172	0.020355	0.00018297	NaN	34.402	61	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1866000			25704	2412	14634	14635							0.1075490637402936
LPRSVKTVL	9	Unmodified	_LPRSVKTVL_					0	0	0		nc|ENSG00000168237|Q8IVS8-5|GLYCTK;ENST00000489173.1_1_3:52325707-52327139:+|nuORF;nc|ENSG00000168237|Q8IVS8-4|GLYCTK;nc|ENSG00000168237|Q8IVS8-3|GLYCTK;ENSG00000168237|ENST00000436784|GLYCTK	nc|ENSG00000168237|Q8IVS8-5|GLYCTK	nc|ENSG00000168237|Q8IVS8-5|GLYCTK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2435607910156	2	506.829309	1011.64407	-1.1393	-0.00057741	0.34364	0.00017416	-0.79562	-0.00040324	506.82943794739555	34.567	0.48943	34.642	34.414	34.904	0.075306					28	17	2	0	0	0	0.23749	1	6821	6821		20.415	2.2682	1	189900			25705	6257	14635	14636	32232	32232					0.1387089912798274
LPRTAISEL	9	Unmodified	_LPRTAISEL_					0	0	0		nc|ENSG00000187531|Q9NRC8-3|SIRT7;ENSG00000187531|ENST00000328666|SIRT7;ENST00000574992.5_1_17:79871999-79873399:-|nuORF;ENST00000572976.5_1_17:79872158-79873644:-|nuORF	nc|ENSG00000187531|Q9NRC8-3|SIRT7	nc|ENSG00000187531|Q9NRC8-3|SIRT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2956848144531	2	500.295299	998.576045	0.65585	0.00032812	-0.89837	-0.00044945	-0.24252	-0.00012133	500.29472763198254	47.213	1.0373	47.213	46.76	47.797	0					87	36	4	0	0	0	0.0060093	1	10681	10681		84.522	40.75	1	2494400			25706	7685	14636	14637	32233	32233					0.07670029477310436
LPRTAISEL	9	Unmodified	_LPRTAISEL_					0	0	0		nc|ENSG00000187531|Q9NRC8-3|SIRT7;ENSG00000187531|ENST00000328666|SIRT7;ENST00000574992.5_1_17:79871999-79873399:-|nuORF;ENST00000572976.5_1_17:79872158-79873644:-|nuORF	nc|ENSG00000187531|Q9NRC8-3|SIRT7	nc|ENSG00000187531|Q9NRC8-3|SIRT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.29595947265625	2	500.295299	998.576045	0.36242	0.00018132	-0.47424	-0.00023726	-0.11182	-5.5944E-05	500.2949087184346	47.15	1.0809	47.202	46.79	47.871	0.05257					116	39	4	0	0	0	0.027957	1	10641	10641		61.09	24.584	1	2595100			25707	7685	14636	14637	32234	32234					0.07670029477310436
LPRTAISEL	9	Unmodified	_LPRTAISEL_					0	0	0		nc|ENSG00000187531|Q9NRC8-3|SIRT7;ENSG00000187531|ENST00000328666|SIRT7;ENST00000574992.5_1_17:79871999-79873399:-|nuORF;ENST00000572976.5_1_17:79872158-79873644:-|nuORF	nc|ENSG00000187531|Q9NRC8-3|SIRT7	nc|ENSG00000187531|Q9NRC8-3|SIRT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2958068847656	2	500.295299	998.576045	0.93249	0.00046652	-1.4265	-0.00071369	-0.49405	-0.00024717	500.2945982961993	47.163	0.90453	47.217	46.877	47.782	0.054371					113	32	4	0	0	0	0.018042	1	10654	10654		67.081	25.125	1	2854000			25708	7685	14636	14637	32235	32235					0.07670029477310436
LPRTALLI	8	Unmodified	_LPRTALLI_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENST00000546503.1_1_12:113715083-113718023:+|nuORF;nc|ENSG00000186815|Q9ULQ1-2|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7998962402344	2	448.80002	895.585488	0.45216	0.00020293	-0.29589	-0.00013279	0.15628	7.0137E-05	448.7997554145922	64.284	0.8485	64.274	63.962	64.811	-0.0095291					85	30	4	0	0	0	0.32038	1	16013	16013		28.487	0	1	1798100			25709	7645	14637	14638	32236	32236					0.1335184255351578
LPRTIFPTSTI	11	Unmodified	_LPRTIFPTSTI_					0	0	0		ENST00000546534.1_1_12:46325244-46326951:-|nuORF;SCAF11|p.E294Lfs*24|1|0.07|ENSG00000139218|chr12:45928821-45928822|-/AG|frameshift_variant;ENSG00000139218|ENST00000369367|SCAF11	ENST00000546534.1_1_12:46325244-46326951:-|nuORF	ENST00000546534.1_1_12:46325244-46326951:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.3639526367188	2	623.363713	1244.71287	0.36812	0.00022947	-0.16119	-0.00010048	0.20692	0.00012899	623.3635456003329	62.731	1.0726	62.731	62.316	63.389	0					102	39	4	0	0	0	0.001595	3	15460	15460;15505;15547		88.576	55.131	1	2286000			25710	4219	14638	14639	32237;32238;32239	32237					0.10030518637040586
LPRTIFPTSTI	11	Unmodified	_LPRTIFPTSTI_					0	0	0		ENST00000546534.1_1_12:46325244-46326951:-|nuORF;SCAF11|p.E294Lfs*24|1|0.07|ENSG00000139218|chr12:45928821-45928822|-/AG|frameshift_variant;ENSG00000139218|ENST00000369367|SCAF11	ENST00000546534.1_1_12:46325244-46326951:-|nuORF	ENST00000546534.1_1_12:46325244-46326951:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.3637084960938	2	623.363713	1244.71287	0.1416	8.8267E-05	0.089835	5.6E-05	0.23143	0.00014427	623.3637228087013	62.631	0.9268	62.728	62.357	63.283	0.096985					93	33	4	0	0	0	0.0014237	3	15455	15411;15455;15506		90.964	50.725	1	2311400			25711	4219	14638	14639	32240;32241;32242	32241					0.10030518637040586
LPRTIFPTSTI	11	Unmodified	_LPRTIFPTSTI_					0	0	0		ENST00000546534.1_1_12:46325244-46326951:-|nuORF;SCAF11|p.E294Lfs*24|1|0.07|ENSG00000139218|chr12:45928821-45928822|-/AG|frameshift_variant;ENSG00000139218|ENST00000369367|SCAF11	ENST00000546534.1_1_12:46325244-46326951:-|nuORF	ENST00000546534.1_1_12:46325244-46326951:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.36376953125	2	623.363713	1244.71287	0.18521	0.00011545	0.05881	3.666E-05	0.24402	0.00015211	623.3636790870427	62.69	0.91516	62.682	62.278	63.193	-0.0085526					97	33	4	0	0	0	0.001595	3	15475	15429;15475;15526		88.576	52.069	1	2246500			25712	4219	14638	14639	32243;32244;32245	32244					0.10030518637040586
LPRTPRIANG	10	Unmodified	_LPRTPRIANG_					0	0	0		nc|ENSG00000145041|Q9Y4B6-3|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;ENSG00000145041|ENST00000684031|DCAF1	nc|ENSG00000145041|Q9Y4B6-3|DCAF1	nc|ENSG00000145041|Q9Y4B6-3|DCAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7879638671875	2	547.825089	1093.63563	0.55899	0.00030623	-0.3425	-0.00018763	0.21649	0.0001186	547.8248851252444	29.528	0.97922	29.54	29.025	30.004	0.012266					71	33	3	0	0	0	0.31691	1	5226	5226		5.7319	0	1	554470			25713	4631	14639	14640	32246	32246					0.09255345211340682
LPRTRVLFI	9	Unmodified	_LPRTRVLFI_					0	0	0		ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2958374023438	2	557.858401	1113.70225	0.2831	0.00015793	-0.68335	-0.00038121	-0.40024	-0.00022328	557.8582479778586	51.822	0.59085	51.822	51.648	52.239	0					42	21	3	0	0	0	0.19686	1	12120	12120		31.268	15.421	1	489390			25714	3574	14640	14641	32247	32247					0.14994580773281996
LPRTRVLFI	9	Unmodified	_LPRTRVLFI_					0	0	0		ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2957763671875	2	557.858401	1113.70225	0.35648	0.00019887	-0.34648	-0.00019328	0.010004	5.5809E-06	557.8582381832157	51.797	0.43931	51.843	51.672	52.112	0.046574					27	15	2	0	0	0	0.21538	1	12130	12130		26.268	15.444	1	570880			25715	3574	14640	14641	32248	32248					0.14994580773281996
LPRTRVLFI	9	Unmodified	_LPRTRVLFI_					0	0	0		ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2955932617188	2	557.858401	1113.70225	0.073067	4.0761E-05	-0.12688	-7.078E-05	-0.053811	-3.0019E-05	557.8583519931399	51.873	0.563	51.872	51.683	52.246	-0.00080872					44	20	3	0	0	0	0.16853	1	12139	12139		31.268	17.362	1	593880			25716	3574	14640	14641	32249	32249					0.14994580773281996
LPRVADILTQL	11	Unmodified	_LPRVADILTQL_					0	0	0		nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-5|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.87744140625	2	619.876988	1237.73942	0.71203	0.00044137	-0.58315	-0.00036148	0.12888	7.9889E-05	619.87663158165	78.034	0.60841	78.034	77.719	78.328	0					41	22	2	0	0	0	0.08061	1	20222	20222		44.392	8.7797	1	443190			25717	6041	14641	14642	32250	32250					0.13006207528360392
LPRVADILTQL	11	Unmodified	_LPRVADILTQL_					0	0	0		nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-5|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8767700195312	2	619.876988	1237.73942	0.45378	0.00028129	-0.46641	-0.00028912	-0.012634	-7.8313E-06	619.8766173595881	77.985	0.68062	78.043	77.682	78.362	0.058151					59	24	3	0	0	0	0.091141	1	20192	20192		41.347	5.7348	1	469750			25718	6041	14641	14642	32251	32251					0.13006207528360392
LPRVADILTQL	11	Unmodified	_LPRVADILTQL_					0	0	0		nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-5|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.876953125	2	619.876988	1237.73942	0.7479	0.00046361	-0.57016	-0.00035343	0.17774	0.00011018	619.8765628600486	78.067	0.59662	78.037	77.679	78.275	-0.030434					46	21	3	0	0	0	0.023517	2	20165	20165;20223		60.899	20.174	1	364630			25719	6041	14641	14642	32252;32253	32252					0.13006207528360392
LPRVCPPASLF	11	Unmodified	_LPRVCPPASLF_					0	0	0			REV__ENST00000251473.9_1_19:11475863-11476019:+|nuORF	REV__ENST00000251473.9_1_19:11475863-11476019:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3358764648438	2	600.333901	1198.65325	0.74068	0.00044466	0.64463	0.00038699	1.3853	0.00083165	600.3341984924119	84.025	1.2388	84.025	82.925	84.163	0					90	48	3	0	0	0	0.44523	1	21866	21866		5.2969	1.7004	1	1154300	+		25720	19526	14642	14643	32254	32254					0.06186924421990625
LPRVCPPASLF	11	Unmodified	_LPRVCPPASLF_					0	0	0			REV__ENST00000251473.9_1_19:11475863-11476019:+|nuORF	REV__ENST00000251473.9_1_19:11475863-11476019:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3345947265625	2	600.333901	1198.65325	0.71064	0.00042662	0.58222	0.00034953	1.2929	0.00077615	600.3340446435084	83.86	2.8022	83.937	83.243	86.045	0.077095					275	109	3	0	0	0	0.44523	1	22259	22259		5.2969	1.7004	1	1104800	+		25721	19526	14642	14643	32255	32255					0.06186924421990625
LPRVTPFYAV	10	Unmodified	_LPRVTPFYAV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3256225585938	2	581.834591	1161.65463	0.29618	0.00017233	0.31053	0.00018067	0.60671	0.000353	581.8346681076945	62.994	0.56713	62.994	62.747	63.315	0					31	20	2	0	0	0	0.30555	1	15591	15591		20.415	9.615	1	354970			25722	2673	14643	14644	32256	32256					0.08026881782393502
LPRVTPFYAV	10	Unmodified	_LPRVTPFYAV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.32666015625	2	581.834591	1161.65463	0.35089	0.00020416	0.16209	9.4311E-05	0.51298	0.00029847	581.8344370933692	62.918	0.59874	63.014	62.712	63.311	0.095722					32	21	2	0	0	0	0.30555	1	15521	15521		20.415	5.1661	1	396960			25723	2673	14643	14644	32257	32257					0.08026881782393502
LPRVTPFYAV	10	Unmodified	_LPRVTPFYAV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.3268432617188	2	581.834591	1161.65463	0.26221	0.00015256	0.96758	0.00056297	1.2298	0.00071554	581.8346898432097	62.977	0.62206	62.969	62.646	63.268	-0.0085526					32	22	2	0	0	0	0.22295	1	15557	15557		29.841	6.0508	1	359080			25724	2673	14643	14644	32258	32258					0.08026881782393502
LPRVVQAQRGP	11	Unmodified	_LPRVVQAQRGP_					0	0	0		nc|nan|Q8N9H9-2|C1orf127;nc|nan|Q8N9H9|C1orf127;ENSG00000175262|ENST00000377004|C1orf127	nc|nan|Q8N9H9-2|C1orf127	nc|nan|Q8N9H9-2|C1orf127	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.864990234375	2	610.864746	1219.71494	0.070665	4.3167E-05	0.14839	9.0644E-05	0.21905	0.00013381	610.8647417944168	28.345	0.60721	28.345	28.121	28.729	0					47	20	3	0	0	0	0.42346	1	4979	4979		8.1555	1.9497	1	423020			25725	6852	14644	14645	32259	32259					0.11386992165489573
LPRWEPLPVGP	11	Unmodified	_LPRWEPLPVGP_					0	0	0			REV__ENSG00000103355|ENST00000682474|PRSS33	REV__ENSG00000103355|ENST00000682474|PRSS33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2472229003906	3	420.908157	1259.70264	0.043826	1.8447E-05	2.6929	0.0011335	2.7367	0.0011519	421.2433793245591	63.123	0.11215	63.114	63.024	63.136	-0.0085564					7	3	3	0	0	0	0.33064	1	15579	15579		7.9454	2.162	1	47757	+		25726	14369	14645	14646	32260	32260					0.083179557024323
LPRWHLQVYAF	11	Unmodified	_LPRWHLQVYAF_					0	0	0		ENSG00000178015|ENST00000380007|GPR150	ENSG00000178015|ENST00000380007|GPR150	ENSG00000178015|ENST00000380007|GPR150	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.26385498046875	3	477.262823	1428.76664	0.77291	0.00036888	0.95645	0.00045648	1.7294	0.00082536	477.26327287862574	50.697	0.6682	50.71	50.43	51.098	0.013092					65	24	4	0	0	0	0.46392	1	11800	11800		2.8433	0.4085	1	782750			25727	7031	14646	14647	32261	32261					0.06940735859416236
LPRYYKNIGL	10	Unmodified	_LPRYYKNIGL_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.90789794921875	3	412.908157	1235.70264	-0.19198	-7.9271E-05	-0.17635	-7.2818E-05	-0.36834	-0.00015209	412.90810780092903	46.554	0.51749	46.554	46.271	46.789	0					31	18	2	0	0	0	0.21589	1	10514	10514		30.703	16.485	1	726490			25728	4449	14647	14648	32262	32262					0.09421955702464402
LPRYYKNIGL	10	Unmodified	_LPRYYKNIGL_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.9078063964844	3	412.908157	1235.70264	0.17184	7.0952E-05	-1.4237	-0.00058786	-1.2519	-0.00051691	412.9075820986242	46.326	0.5383	46.386	46.072	46.61	0.059837					42	19	3	0	0	0	0.13386	1	10413	10413		40.725	25.768	1	647790			25729	4449	14647	14648	32263	32263					0.09421955702464402
LPRYYKNIGL	10	Unmodified	_LPRYYKNIGL_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	412.908157	1235.70264	0.042823	1.7682E-05	-0.97702	-0.00040342	-0.93419	-0.00038574	412.90759813034936	46.351	0.678	46.405	46.06	46.738	0.054375	-0.043241	-0.00013121	NaN	40.725	46	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	678700			25730	4449	14647	14648							0.09421955702464402
LPSAFHIL	8	Unmodified	_LPSAFHIL_					0	0	0		ENST00000417775.5_1_1:75184899-75184968:-|nuORF	ENST00000417775.5_1_1:75184899-75184968:-|nuORF	ENST00000417775.5_1_1:75184899-75184968:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.26324462890625	2	449.263271	896.511988	0.23193	0.0001042	-0.16754	-7.5271E-05	0.064389	2.8928E-05	449.26300165880053	58.912	0.45289	58.912	58.654	59.107	0					38	15	3	0	0	0	0.2705	1	14330	14330		34.187	0	1	366060			25731	10337	14648	14649	32264	32264					0.05959294111039526
LPSAQRFHINL	11	Unmodified	_LPSAQRFHINL_					0	0	0		nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B	nc|ENSG00000168961|O00182-3|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.21343994140625	3	432.578811	1294.7146	-0.10176	-4.4018E-05	-0.18713	-8.0948E-05	-0.28889	-0.00012497	432.57869522357754	52.297	0.71435	52.297	51.836	52.55	0					67	25	3	0	0	0	0.28915	1	12272	12272		32.616	15.174	1	2272000			25732	6317	14649	14650	32265	32265					0.07903572445684404
LPSAQRFHINL	11	Unmodified	_LPSAQRFHINL_					0	0	0		nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B	nc|ENSG00000168961|O00182-3|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.8165893554688	2	648.364579	1294.7146	0.44307	0.00028727	-0.17539	-0.00011371	0.26768	0.00017356	648.3645581704651	52.278	0.46873	52.278	51.969	52.438	0					37	16	4	0	0	0	0.32369	1	12241	12241		11.518	3.3624	1	323700			25733	6317	14649	14650	32266	32266					0.07903572445684404
LPSAQRFHINL	11	Unmodified	_LPSAQRFHINL_					0	0	0		nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B	nc|ENSG00000168961|O00182-3|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.21337890625	3	432.578811	1294.7146	-0.0038584	-1.6691E-06	-0.32497	-0.00014058	-0.32883	-0.00014224	432.5786518377923	52.188	0.81473	52.238	51.817	52.632	0.050575					74	29	3	0	0	0	0.28915	1	12243	12243		32.616	16.342	1	2167900			25734	6317	14649	14650	32267	32267					0.07903572445684404
LPSAQRFHINL	11	Unmodified	_LPSAQRFHINL_					0	0	0		nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B	nc|ENSG00000168961|O00182-3|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.8167724609375	2	648.364579	1294.7146	0.38826	0.00025173	-0.058386	-3.7855E-05	0.32987	0.00021388	648.3643181026357	52.228	0.4556	52.278	52.009	52.465	0.050575					35	16	3	0	0	0	0.31874	1	12221	12221		14.218	11.483	1	424190			25735	6317	14649	14650	32268	32268					0.07903572445684404
LPSAQRFHINL	11	Unmodified	_LPSAQRFHINL_					0	0	0		nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B	nc|ENSG00000168961|O00182-3|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.21343994140625	3	432.578811	1294.7146	-0.21702	-9.388E-05	-0.20262	-8.7651E-05	-0.41965	-0.00018153	432.57871567148646	52.411	0.81415	52.41	51.982	52.796	-0.00080872					71	29	3	0	0	0	0.30314	1	12299	12299		28.181	15.309	1	2345900			25736	6317	14649	14650	32269	32269					0.07903572445684404
LPSAQRFHINL	11	Unmodified	_LPSAQRFHINL_					0	0	0		nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B	nc|ENSG00000168961|O00182-3|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.8168334960938	2	648.364579	1294.7146	0.16779	0.00010879	0.13951	9.0454E-05	0.3073	0.00019924	648.3646385409118	52.422	0.52398	52.421	52.115	52.639	-0.00081253					35	18	3	0	0	0	0.32369	1	12264	12264		11.518	10.325	1	503200			25737	6317	14649	14650	32270	32270					0.07903572445684404
LPSARPLSL	9	Unmodified	_LPSARPLSL_					0	0	0		ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7765808105469	2	477.292559	952.570566	0.79105	0.00037756	-1.3246	-0.00063224	-0.53358	-0.00025468	477.2922457693702	50.293	0.83537	50.338	49.957	50.792	0.044891					36	30	2	0	0	0	0.22596	1	11560	11560		21.747	4.8044	1	254550			25738	690	14650	14651	32271	32271					0.09238350685518526
LPSARPLSL	9	Unmodified	_LPSARPLSL_					0	0	0		ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	ENSG00000054598|ENST00000645831|FOXC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	477.292559	952.570566	0.81989	0.00039133	-0.99188	-0.00047342	-0.17199	-8.2088E-05	477.2921770878575	50.205	0.48299	50.225	50.095	50.578	0.020691	-0.044607	2.9249E-05	NaN	20.454	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284510			25739	690	14650	14651							0.09238350685518526
LPSATRALEL	10	Unmodified	_LPSATRALEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.814208984375	2	535.813856	1069.61316	0.50973	0.00027312	-0.02898	-1.5528E-05	0.48075	0.00025759	535.8138505893945	52.418	0.96433	52.418	51.86	52.824	0					86	34	3	0	0	0	0.0049066	2	12277	12277;12326		92.201	48.429	1	2232300			25740	5388	14651	14652	32272;32273	32272					0.08113701023080466
LPSATRALEL	10	Unmodified	_LPSATRALEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8140258789062	2	535.813856	1069.61316	0.38522	0.0002064	0.13922	7.4598E-05	0.52444	0.000281	535.8139457221902	52.298	1.004	52.348	51.874	52.878	0.050575					81	36	3	0	0	0	0.022722	1	12239	12239		68.76	34.358	1	2362800			25741	5388	14651	14652	32274	32274					0.08113701023080466
LPSATRALEL	10	Unmodified	_LPSATRALEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.814208984375	2	535.813856	1069.61316	0.34128	0.00018286	0.15373	8.2369E-05	0.49501	0.00026523	535.8139455351281	52.497	0.89013	52.496	52.008	52.898	-0.00080872					91	32	4	0	0	0	0.0037867	3	12334	12285;12334;12382		98.73	58.78	1	2712000			25742	5388	14651	14652	32275;32276;32277	32276					0.08113701023080466
LPSDFEHTI	9	Unmodified	_LPSDFEHTI_					0	0	0		ENSG00000077264|ENST00000372007|PAK3;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3;ENST00000533568.5_1_11:77069900-77103583:-|nuORF	ENSG00000077264|ENST00000372007|PAK3	ENSG00000077264|ENST00000372007|PAK3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.7618408203125	2	529.761289	1057.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.08	1	50.08	49.58	50.58	0								0	0	0	0.0067712	1	11587	11587		85.272	52.967	1				25743	1084	14652	14653	32278	32278					-0.01842840173321747
LPSDKALVL	9	Unmodified	_LPSDKALVL_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.29473876953125	2	478.294768	954.574983	0.57965	0.00027724	-0.48691	-0.00023289	0.092736	4.4355E-05	478.29441826899443	50.542	0.70563	50.542	50.217	50.922	0					50	25	3	0	0	0	0.013404	1	11713	11713		74.2	12.842	1	754620			25744	273	14653	14654	32279	32279					0.09587815108409359
LPSDKALVL	9	Unmodified	_LPSDKALVL_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2946472167969	2	478.294768	954.574983	0.89254	0.0004269	-0.7555	-0.00036135	0.13704	6.5547E-05	478.2942320302155	50.582	0.56308	50.603	50.335	50.898	0.020691					52	20	4	0	0	0	0.053988	1	11708	11708		51.415	1.8609	1	816770			25745	273	14653	14654	32280	32280					0.09587815108409359
LPSDKALVL	9	Unmodified	_LPSDKALVL_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	478.294768	954.574983	0.84711	0.00040517	-0.78203	-0.00037404	0.065086	3.113E-05	478.29427369270604	50.542	0.68571	50.587	50.242	50.928	0.044891	0.0098295	-0.00010299	NaN	74.2	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	864150			25746	273	14653	14654							0.09587815108409359
LPSDLRTISL	10	Unmodified	_LPSDLRTISL_					0	0	0		ENST00000413704.5_1_3:9487316-9517772:+|nuORF;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;ENSG00000168137|ENST00000402198|SETD5	ENST00000413704.5_1_3:9487316-9517772:+|nuORF	ENST00000413704.5_1_3:9487316-9517772:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.271728515625	2	557.826963	1113.63937	0.00084964	4.7395E-07	0.20534	0.00011455	0.20619	0.00011502	557.8268966110721	60.291	0.43001	60.291	60.065	60.495	0					34	15	3	0	0	0	0.13837	1	14722	14722		68.76	24.987	1	933940			25747	6249	14654	14655	32281	32281					0.08709970194581729
LPSDLRTISL	10	Unmodified	_LPSDLRTISL_					0	0	0		ENST00000413704.5_1_3:9487316-9517772:+|nuORF;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;ENSG00000168137|ENST00000402198|SETD5	ENST00000413704.5_1_3:9487316-9517772:+|nuORF	ENST00000413704.5_1_3:9487316-9517772:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2719116210938	2	557.826963	1113.63937	-0.22148	-0.00012355	0.15444	8.6151E-05	-0.067041	-3.7397E-05	557.8268259046515	60.134	0.39861	60.23	60.077	60.475	0.095093					36	14	3	0	0	0	0.19489	1	14692	14692		55.249	17.073	1	740960			25748	6249	14654	14655	32282	32282					0.08709970194581729
LPSDLRTISL	10	Unmodified	_LPSDLRTISL_					0	0	0		ENST00000413704.5_1_3:9487316-9517772:+|nuORF;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;ENSG00000168137|ENST00000402198|SETD5	ENST00000413704.5_1_3:9487316-9517772:+|nuORF	ENST00000413704.5_1_3:9487316-9517772:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2719116210938	2	557.826963	1113.63937	0.090513	5.0491E-05	-0.14989	-8.3612E-05	-0.059376	-3.3121E-05	557.8268773938012	60.27	0.40166	60.259	60.057	60.459	-0.011486					35	14	3	0	0	0	0.17449	1	14716	14716		60.899	23.825	1	785100			25749	6249	14654	14655	32283	32283					0.08709970194581729
LPSDTRLVL	9	Unmodified	_LPSDTRLVL_					0	0	0		nc|ENSG00000149131|P05155-3|SERPING1;ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.81341552734375	2	507.303124	1012.5917	0.35521	0.0001802	-0.3784	-0.00019196	-0.023189	-1.1764E-05	507.30293242393185	52.407	0.6949	52.407	52.18	52.875	0					45	24	2	0	0	0	0.20167	1	12245	12245		22.736	2.2827	1	2014500			25750	4846	14655	14656	32284	32284					0.08590315994376851
LPSDTRLVL	9	Unmodified	_LPSDTRLVL_					0	0	0		nc|ENSG00000149131|P05155-3|SERPING1;ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.8135070800781	2	507.303124	1012.5917	0.17154	8.7023E-05	-0.078634	-3.9891E-05	0.092907	4.7132E-05	507.30308344547905	52.541	0.65197	52.54	52.246	52.898	-0.00081253					45	23	2	0	0	0	0.15943	1	12263	12263		39.95	9.3132	1	1680900			25751	4846	14655	14656	32285	32285					0.08590315994376851
LPSDTRLVL	9	Unmodified	_LPSDTRLVL_					0	0	0		nc|ENSG00000149131|P05155-3|SERPING1;ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	507.303124	1012.5917	0.34444	0.00017474	-0.35783	-0.00018153	-0.013386	-6.7909E-06	507.3029146571864	52.399	0.76334	52.449	52.144	52.907	0.050575	-0.016316	-9.6178E-05	NaN	26.268	45	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2003900			25752	4846	14655	14656							0.08590315994376851
LPSDTRLVLL	10	Unmodified	_LPSDTRLVLL_					0	0	0		nc|ENSG00000149131|P05155-3|SERPING1;ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.35302734375	2	563.845156	1125.67576	0.4809	0.00027115	-0.66377	-0.00037426	-0.18287	-0.00010311	563.8448133511079	64.022	0.35883	64.022	63.771	64.13	0					40	12	4	0	0	0	0.29144	1	15899	15899		26.021	4.4837	1	1011700			25753	4846	14656	14657	32286	32286					0.11794847091277916
LPSDTRLVLL	10	Unmodified	_LPSDTRLVLL_					0	0	0		nc|ENSG00000149131|P05155-3|SERPING1;ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3533935546875	2	563.845156	1125.67576	0.51292	0.00028921	-0.81953	-0.00046209	-0.30661	-0.00017288	563.8446843438288	63.905	0.35342	63.998	63.737	64.09	0.09288					40	12	4	0	0	0	0.27655	1	15858	15858		30.703	9.1665	1	1027700			25754	4846	14656	14657	32287	32287					0.11794847091277916
LPSDTRLVLL	10	Unmodified	_LPSDTRLVLL_					0	0	0		nc|ENSG00000149131|P05155-3|SERPING1;ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	nc|ENSG00000149131|P05155-3|SERPING1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.84521484375	2	563.845156	1125.67576	0.48093	0.00027117	-0.58381	-0.00032918	-0.10288	-5.8006E-05	563.8448548080827	64.012	0.41035	64.002	63.718	64.128	-0.0095291					36	14	4	0	0	0	0.11678	1	15878	15878		44.392	21.656	1	1233700			25755	4846	14656	14657	32288	32288					0.11794847091277916
LPSELIVHI	9	Unmodified	_LPSELIVHI_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8321228027344	2	510.808042	1019.60153	0.50582	0.00025838	0.60299	0.00030801	1.1088	0.00056639	510.80839237768754	64.647	0.72269	64.647	64.212	64.934	0					43	21	3	0	0	0	0.090484	1	16073	16073		54.774	12.679	1	456980			25756	5953	14657	14658	32289	32289					0.09251503999746546
LPSELIVHI	9	Unmodified	_LPSELIVHI_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8321228027344	2	510.808042	1019.60153	0.442	0.00022578	0.64508	0.00032951	1.0871	0.00055529	510.80829950101673	64.581	0.59944	64.674	64.363	64.962	0.092888					41	21	3	0	0	0	0.12743	1	16049	16049		46.021	11.919	1	404680			25757	5953	14657	14658	32290	32290					0.09251503999746546
LPSELIVHI	9	Unmodified	_LPSELIVHI_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.832275390625	2	510.808042	1019.60153	0.38467	0.00019649	0.87845	0.00044872	1.2631	0.00064521	510.8084674228144	64.653	0.74722	64.643	64.177	64.924	-0.0095291					39	20	3	0	0	0	0.090484	1	16104	16104		54.774	12.679	1	363890			25758	5953	14657	14658	32291	32291					0.09251503999746546
LPSELPFFF	9	Unmodified	_LPSELPFFF_					0	0	0			REV__ENST00000601114.1_1_19:51379578-51380013:+|nuORF	REV__ENST00000601114.1_1_19:51379578-51380013:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2342529296875	2	548.789318	1095.56408	0.13213	7.2509E-05	-2.7585	-0.0015138	-2.6263	-0.0014413	548.7877681404243	61.704	0.62784	61.696	61.351	61.979	-0.0085564					28	22	2	0	0	0	0.19839	1	15210	15210		21.747	5.8995	1	478380	+		25759	22632	14658	14659	32292	32292					0.02012412734143254
LPSESGHASET	11	Unmodified	_LPSESGHASET_					0	0	0			REV__ENST00000426250.3_1_12:72665898-72666905:-|nuORF	REV__ENST00000426250.3_1_12:72665898-72666905:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.31201171875	2	557.754192	1113.49383	0.23782	0.00013264	-1.4021	-0.000782	-1.1642	-0.00064936	557.7526572418055	25.128	0.33834	25.128	24.958	25.296	0					16	11	2	0	0	0	0.33149	1	3994	3994		5.2969	0.96765	1	82501	+		25760	20900	14659	14660	32293	32293					-0.0583753739228996
LPSFFQSSF	9	Unmodified	_LPSFFQSSF_					0	0	0			REV__nc|ENSG00000056586|Q9HBD1-3|RC3H2	REV__nc|ENSG00000056586|Q9HBD1-3|RC3H2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.852294921875	2	530.260925	1058.5073	0.57843	0.00030672	-1.1793	-0.00062532	-0.60084	-0.0003186	530.2602792372088	52.882	0.8691	52.882	52.465	53.334	0					48	31	2	0	0	0	0.22596	1	12348	12348		10.824	0	1	272860	+		25761	22887	14660	14661	32294	32294					-0.019616348223962632
LPSFGALPL	9	Unmodified	_LPSFGALPL_					0	0	0			REV__ENSG00000196422|ENST00000356818|PPP1R26	REV__ENSG00000196422|ENST00000356818|PPP1R26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7708435058594	2	457.770929	913.527304	-0.14352	-6.5699E-05	1.1354	0.00051977	0.99192	0.00045407	457.77121170381065	75.971	0.71367	75.971	75.682	76.396	0					41	25	2	0	0	0	0.055495	1	19569	19569		50.855	2.5092	1	270900	+		25762	18651	14661	14662	32295	32295					0.06708160908226546
LPSFGALPL	9	Unmodified	_LPSFGALPL_					0	0	0			REV__ENSG00000196422|ENST00000356818|PPP1R26	REV__ENSG00000196422|ENST00000356818|PPP1R26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.77093505859375	2	457.770929	913.527304	0.041043	1.8788E-05	0.88013	0.0004029	0.92118	0.00042169	457.7709360344847	75.957	0.46777	76.01	75.782	76.25	0.053421					30	16	2	0	0	0	0.20344	1	19589	19589		23.148	1.4018	1	268970	+		25763	18651	14661	14662	32296	32296					0.06708160908226546
LPSFYKIG	8	Unmodified	_LPSFYKIG_					0	0	0		ENSG00000198231|ENST00000389924|DDX42;DDX42|p.I464Mfs*8|1|0.28|ENSG00000198231|chr17:63811166-63811166|T/-|frameshift_variant;ENST00000580108.1_1_17:61864409-61875460:+|nuORF	ENSG00000198231|ENST00000389924|DDX42	ENSG00000198231|ENST00000389924|DDX42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.2696533203125	2	462.763104	923.511654	0.060774	2.8124E-05	-1.8858	-0.00087268	-1.825	-0.00084455	462.76219430273306	76.701	0.4226	76.701	76.588	77.011	0					25	15	2	0	0	0	0.28969	1	19812	19812		28.487	0	1	91166			25764	8054	14662	14663	32297	32297					0.04683874391173504
LPSFYKIG	8	Unmodified	_LPSFYKIG_					0	0	0		ENSG00000198231|ENST00000389924|DDX42;DDX42|p.I464Mfs*8|1|0.28|ENSG00000198231|chr17:63811166-63811166|T/-|frameshift_variant;ENST00000580108.1_1_17:61864409-61875460:+|nuORF	ENSG00000198231|ENST00000389924|DDX42	ENSG00000198231|ENST00000389924|DDX42	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	462.763104	923.511654	-0.062843	-2.9081E-05	-1.6515	-0.00076426	-1.7144	-0.00079334	462.76228781518137	76.766	0.33265	76.82	76.619	76.951	0.053413	0.029014	0.00017544	NaN	28.487	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139530			25765	8054	14662	14663							0.04683874391173504
LPSFYKIG	8	Unmodified	_LPSFYKIG_					0	0	0		ENSG00000198231|ENST00000389924|DDX42;DDX42|p.I464Mfs*8|1|0.28|ENSG00000198231|chr17:63811166-63811166|T/-|frameshift_variant;ENST00000580108.1_1_17:61864409-61875460:+|nuORF	ENSG00000198231|ENST00000389924|DDX42	ENSG00000198231|ENST00000389924|DDX42	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	462.763104	923.511654	0.41216	0.00019073	-2.1436	-0.00099197	-1.7314	-0.00080124	462.762088380647	76.882	0.44655	76.851	76.599	77.045	-0.031334	0.060184	-0.00027997	NaN	28.487	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101710			25766	8054	14662	14663							0.04683874391173504
LPSGAVFVI	9	Unmodified	_LPSGAVFVI_					0	0	0		nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000561014.1_1_15:49531438-49610381:+|nuORF;ENST00000560119.5_1_15:49527865-49611209:+|nuORF	nc|ENSG00000156958|Q01415-2|GALK2	nc|ENSG00000156958|Q01415-2|GALK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.77081298828125	2	451.770929	901.527304	0.062354	2.817E-05	0.00063609	2.8737E-07	0.06299	2.8457E-05	451.77079543277523	76.787	0.69746	76.84	76.451	77.148	0.053421					51	24	3	0	0	0	0.11517	1	19796	19796		36.044	10.645	1	552180			25767	5268	14663	14664	32298	32298					0.07260160908231228
LPSGDRVAVSV	11	Unmodified	_LPSGDRVAVSV_					0	0	0		ENSG00000169871|ENST00000306085|TRIM56	ENSG00000169871|ENST00000306085|TRIM56	ENSG00000169871|ENST00000306085|TRIM56	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.30908203125	2	550.308938	1098.60332	0.31324	0.00017238	0.1737	9.5586E-05	0.48694	0.00026797	550.3090126630284	42.564	0.7633	42.649	42.295	43.058	0.085197					58	27	4	0	0	0	0.043061	1	9266	9266		55.249	5.5067	1	589540			25768	6393	14664	14665	32299	32299					0.05796513017708094
LPSGDRVAVSV	11	Unmodified	_LPSGDRVAVSV_					0	0	0		ENSG00000169871|ENST00000306085|TRIM56	ENSG00000169871|ENST00000306085|TRIM56	ENSG00000169871|ENST00000306085|TRIM56	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3095092773438	2	550.308938	1098.60332	0.32894	0.00018102	0.37903	0.00020858	0.70797	0.0003896	550.3091214877011	42.488	0.66139	42.579	42.324	42.985	0.091362					56	23	3	0	0	0	0.067879	1	9253	9253		48.073	3.6808	1	669430			25769	6393	14664	14665	32300	32300					0.05796513017708094
LPSGLRDPLT	10	Unmodified	_LPSGLRDPLT_					0	0	0			REV__HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|68|3|sense	REV__HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|68|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7721557617188	2	534.806031	1067.59751	0.43827	0.00023439	-1.7099	-0.00091448	-1.2716	-0.00068008	534.8057208607416	43.887	1.1105	43.887	42.954	44.065	0					62	40	3	0	0	0	0.29589	1	9670	9670		22.736	1.1993	1	351400	+		25770	22739	14665	14666	32301	32301					0.06641414506020737
LPSHLPLHKPF	11	Unmodified	_LPSHLPLHKPF_					0	0	0			REV__ENST00000344629.11_1_3:9798246-9798938:+|nuORF	REV__ENST00000344629.11_1_3:9798246-9798938:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.5486145019531	3	429.252036	1284.73428	-0.26059	-0.00011186	-0.18843	-8.0882E-05	-0.44901	-0.00019274	429.2525225629394	16.888	0.47268	16.773	16.611	17.084	-0.11434					28	16	2	0	0	0	0.329	1	1457	1457		4.7159	0	1	174590	+		25771	20140	14666	14667	32302	32302					0.10329948456387683
LPSHLPLHKPF	11	Unmodified	_LPSHLPLHKPF_					0	0	0			REV__ENST00000344629.11_1_3:9798246-9798938:+|nuORF	REV__ENST00000344629.11_1_3:9798246-9798938:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.7376708984375	3	429.252036	1284.73428	-0.020035	-8.6001E-06	-0.66499	-0.00028545	-0.68502	-0.00029405	429.58569526109875	16.792	0.50964	16.729	16.617	17.127	-0.062534					45	18	4	0	0	0	0.32843	1	1522	1522		2.8433	0.21205	1	179400	+		25772	20140	14666	14667	32303	32303					0.10329948456387683
LPSHSKQLL	9	Unmodified	_LPSHSKQLL_					0	0	0		nc|ENSG00000169635|Q96JB3-2|HIC2;ENSG00000169635|ENST00000407464|HIC2	nc|ENSG00000169635|Q96JB3-2|HIC2	nc|ENSG00000169635|Q96JB3-2|HIC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2695617675781	2	511.803291	1021.59203	0.4786	0.00024495	-0.39128	-0.00020026	0.087316	4.4688E-05	511.8030334260067	45.093	0.92644	45.093	44.739	45.666	0					65	33	2	0	0	0	0.24848	1	10161	10161		9.3831	0	1	285050			25773	6372	14667	14668	32304	32304					0.08209735714228827
LPSIGIPLL	9	Unmodified	_LPSIGIPLL_					0	0	0		ENST00000472467.1_1_1:155979333-155981702:-|nuORF;ENST00000532074.5_1_1:155979333-155988136:-|nuORF;ENST00000496742.5_1_1:155979333-155990718:-|nuORF;ENST00000484320.6_1_1:155979333-155988008:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000472467.1_1_1:155979333-155981702:-|nuORF	ENST00000472467.1_1_1:155979333-155981702:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.80218505859375	2	461.802229	921.589904	0.37868	0.00017488	-0.14602	-6.7431E-05	0.23267	0.00010745	461.80208697401935	60.923	0.58262	60.923	60.521	61.103	0					32	20	2	0	0	0	0.055495	1	14947	14947		50.855	0	1	1263200			25774	5685	14668	14669	32305	32305					0.12597306976431355
LPSIGIPLL	9	Unmodified	_LPSIGIPLL_					0	0	0		ENST00000472467.1_1_1:155979333-155981702:-|nuORF;ENST00000532074.5_1_1:155979333-155988136:-|nuORF;ENST00000496742.5_1_1:155979333-155990718:-|nuORF;ENST00000484320.6_1_1:155979333-155988008:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000472467.1_1_1:155979333-155981702:-|nuORF	ENST00000472467.1_1_1:155979333-155981702:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	461.802229	921.589904	0.41473	0.00019152	-0.16786	-7.752E-05	0.24686	0.000114	461.80204079382963	60.665	0.47504	60.762	60.503	60.978	0.096985	-0.062097	4.2373E-05	NaN	50.855	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	713270			25775	5685	14668	14669							0.12597306976431355
LPSIGIPLL	9	Unmodified	_LPSIGIPLL_					0	0	0		ENST00000472467.1_1_1:155979333-155981702:-|nuORF;ENST00000532074.5_1_1:155979333-155988136:-|nuORF;ENST00000496742.5_1_1:155979333-155990718:-|nuORF;ENST00000484320.6_1_1:155979333-155988008:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000472467.1_1_1:155979333-155981702:-|nuORF	ENST00000472467.1_1_1:155979333-155981702:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	461.802229	921.589904	0.57902	0.00026739	-0.33628	-0.0001553	0.24273	0.00011209	461.8019553394429	60.796	0.45609	60.787	60.487	60.944	-0.0094566	-0.037285	-0.00011318	NaN	50.855	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	726680			25776	5685	14668	14669							0.12597306976431355
LPSKIRINL	9	Unmodified	_LPSKIRINL_					0	0	0		ENST00000420708.1_1_22:21496493-21496589:-|nuORF;ENST00000498701.1_1_2:11597287-11606038:-|nuORF;ENST00000468775.1_1_2:11591697-11606038:-|nuORF;ENSG00000169016|ENST00000381525|E2F6	ENST00000420708.1_1_22:21496493-21496589:-|nuORF	ENST00000420708.1_1_22:21496493-21496589:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.769775390625	2	527.342584	1052.67061	0.69306	0.00036548	-0.75232	-0.00039673	-0.059259	-3.125E-05	527.3428483109724	45.45	0.45017	45.51	45.253	45.703	0.059834					21	15	2	0	0	0	0.25202	1	10190	10190		6.7232	0	1	132780			25777	6319	14669	14670	32306	32306					0.14638588019306553
LPSKLISLF	9	Unmodified	_LPSKLISLF_					0	0	0			REV__ENST00000484876.1_1_9:134400562-134401473:-|nuORF	REV__ENST00000484876.1_1_9:134400562-134401473:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7748718261719	2	509.320786	1016.62702	0.4004	0.00020393	1.4689	0.00074812	1.8692	0.00095205	509.3216031127577	66.65	0.43298	66.65	66.423	66.856	0					24	14	2	0	0	0	0.21389	1	16703	16703		25.399	0	1	98174	+		25778	21537	14670	14671	32307	32307					0.11936978522180652
LPSKLISLF	9	Unmodified	_LPSKLISLF_					0	0	0			REV__ENST00000484876.1_1_9:134400562-134401473:-|nuORF	REV__ENST00000484876.1_1_9:134400562-134401473:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.77490234375	2	509.320786	1016.62702	0.31233	0.00015907	1.7236	0.00087788	2.036	0.001037	509.82307462446965	66.487	0.4668	66.571	66.386	66.852	0.083832					26	16	2	0	0	0	0.21389	1	16663	16663		25.399	0	1	135800	+		25779	21537	14670	14671	32308	32308					0.11936978522180652
LPSKPSSTL	9	Unmodified	_LPSKPSSTL_					0	0	0		ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2682800292969	2	465.26875	928.522947	-0.16805	-7.819E-05	-0.33669	-0.00015665	-0.50475	-0.00023484	465.26853034119677	31.199	0.79991	31.199	30.727	31.526	0					62	28	4	0	0	0	0.032589	2	5778	5778;5829		59.368	19.419	1	585050			25780	1555	14671	14672	32309;32310	32309					0.05582651694669494
LPSKPSSTL	9	Unmodified	_LPSKPSSTL_					0	0	0		ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2685546875	2	465.26875	928.522947	-0.23078	-0.00010737	0.091758	4.2692E-05	-0.13902	-6.4682E-05	465.2685920951068	31.108	0.72211	31.136	30.778	31.501	0.027946					65	25	4	0	0	0	0.032589	2	5812	5764;5812		59.368	13.454	1	739730			25781	1555	14671	14672	32311;32312	32312					0.05582651694669494
LPSKPSSTL	9	Unmodified	_LPSKPSSTL_					0	0	0		ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.26849365234375	2	465.26875	928.522947	0.11897	5.5354E-05	-0.40728	-0.00018949	-0.28831	-0.00013414	465.2683779672558	31.117	0.62248	31.158	30.824	31.447	0.040991					55	22	4	0	0	0	0.026579	2	5786	5741;5786		61.602	17.83	1	722820			25782	1555	14671	14672	32313;32314	32314					0.05582651694669494
LPSLFPFQF	9	Unmodified	_LPSLFPFQF_					0	0	0		ENST00000303391.10_2_X:153292770-153293031:-|nuORF	ENST00000303391.10_2_X:153292770-153293031:-|nuORF	ENST00000303391.10_2_X:153292770-153293031:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7874145507812	2	548.29731	1094.58007	0.55582	0.00030475	-0.70644	-0.00038734	-0.15062	-8.2583E-05	548.2968143342376	72.898	1.5014	72.952	71.78	73.281	0.053841					68	54	2	0	0	0	0.1939	1	18506	18506		30.637	2.1497	1	125520			25783	9246	14672	14673	32315	32315					0.03656118971025535
LPSLILLYRDL	11	Unmodified	_LPSLILLYRDL_					0	0	0			REV__ENSG00000158748|ENST00000289753|HTR6	REV__ENSG00000158748|ENST00000289753|HTR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.5736389160156	3	439.270984	1314.79112	0.098432	4.3238E-05	0.95755	0.00042062	1.056	0.00046386	439.27125832555583	32.732	0.77624	32.787	32.618	33.394	0.055313					42	27	3	0	0	0	0.3325	1	6248	6248		4.1166	1.0444	1	123660	+		25784	16823	14673	14674	32316	32316					0.14631951222281714
LPSLILLYRDL	11	Unmodified	_LPSLILLYRDL_					0	0	0			REV__ENSG00000158748|ENST00000289753|HTR6	REV__ENSG00000158748|ENST00000289753|HTR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.9084777832031	3	439.270984	1314.79112	0.0478	2.0997E-05	0.68515	0.00030097	0.73295	0.00032197	439.2713755958123	32.888	0.71909	32.942	32.71	33.429	0.054375					36	25	2	0	0	0	0.3331	1	6254	6254		2.2527	2.1128	1	141870	+		25785	16823	14673	14674	32317	32317					0.14631951222281714
LPSLKNGI	8	Unmodified	_LPSLKNGI_					0	0	0			REV__ENSG00000081800|ENST00000194130|SLC13A1	REV__ENSG00000081800|ENST00000194130|SLC13A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.25994873046875	2	421.260728	840.506903	0.20047	8.4449E-05	-1.7605	-0.00074161	-1.56	-0.00065717	421.2598615215447	77.384	1.4187	77.384	76.725	78.144	0					114	52	3	0	0	0	0.33441	2	19942	19942;19984		26.884	3.7352	1	591020	+		25786	13907	14674	14675	32318;32319	32318					0.08026990248424681
LPSLKNGI	8	Unmodified	_LPSLKNGI_					0	0	0			REV__ENSG00000081800|ENST00000194130|SLC13A1	REV__ENSG00000081800|ENST00000194130|SLC13A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2613220214844	2	421.260728	840.506903	0.20828	8.7741E-05	-1.6889	-0.00071148	-1.4806	-0.00062374	421.2599708944087	77.337	1.3095	77.393	76.667	77.977	0.05542					89	46	3	0	0	0	0.27124	3	19877	19877;19919;19938		34.102	5.6156	1	482810	+		25787	13907	14674	14675	32320;32321;32322	32320					0.08026990248424681
LPSLKNGI	8	Unmodified	_LPSLKNGI_					0	0	0			REV__ENSG00000081800|ENST00000194130|SLC13A1	REV__ENSG00000081800|ENST00000194130|SLC13A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.2599792480469	2	421.260728	840.506903	0.42805	0.00018032	-1.926	-0.00081137	-1.498	-0.00063105	421.2598473563522	77.391	1.0579	77.359	76.754	77.812	-0.031334					86	38	3	0	0	0	0.33441	3	19931	19931;19957;19982		26.884	3.7352	1	567260	+		25788	13907	14674	14675	32323;32324;32325	32323					0.08026990248424681
LPSLRAIVA	9	Unmodified	_LPSLRAIVA_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000478416.1_1_17:18157237-18162004:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII;ENST00000478416.1_1_17:18157237-18162004:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.3031005859375	2	470.302927	938.591301	0.33381	0.00015699	-0.23629	-0.00011113	0.09752	4.5864E-05	470.3027562771816	60.928	1.0048	60.928	60.175	61.18	0					77	36	4	0	0	0	0.05341	1	14800	14800		51.63	3.8811	1	2474100			25789	7014;10975	14675	14676	32326	32326					0.11954941065175717
LPSLRILYM	9	Oxidation (M)	_LPSLRILYM(Oxidation (M))_		LPSLRILYM(1)		LPSLRILYM(48)	0	0	1		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.3229370117188	2	561.323002	1120.63145	0.21122	0.00011856	-0.77592	-0.00043554	-0.5647	-0.00031698	561.3222900157465	65.416	1.1983	65.416	64.647	65.845	0					78	43	3	0	0	0	0.064268	1	16358	16358		47.594	30.652	1	722930			25790	8105	14676	14677	32327	32327		883			0.07596119673439716
LPSLRILYM	9	Oxidation (M)	_LPSLRILYM(Oxidation (M))_		LPSLRILYM(1)		LPSLRILYM(73)	0	0	1		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3230590820312	2	561.323002	1120.63145	0.035317	1.9824E-05	-0.60742	-0.00034096	-0.57211	-0.00032114	561.3222319517971	65.314	1.8648	65.403	64.359	66.224	0.088882					96	68	3	0	0	0	0.014206	1	16297	16297		72.968	34.817	1	765580			25791	8105	14676	14677	32328	32328		883			0.07596119673439716
LPSLRILYM	9	Oxidation (M)	_LPSLRILYM(Oxidation (M))_		LPSLRILYM(1)		LPSLRILYM(70)	0	0	1		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3226928710938	2	561.323002	1120.63145	0.17648	9.9063E-05	-0.47524	-0.00026676	-0.29876	-0.0001677	561.3225326989574	65.44	0.87365	65.429	65.048	65.922	-0.011337					57	31	3	0	0	0	0.035405	1	16329	16329		70.332	40.107	1	993440			25792	8105	14676	14677	32329	32329		883			0.07596119673439716
LPSLRRLNL	9	Unmodified	_LPSLRRLNL_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000488221.5_1_17:18156710-18157010:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII;ENST00000488221.5_1_17:18156710-18157010:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3458251953125	2	541.345658	1080.67676	0.61249	0.00033157	-0.30288	-0.00016396	0.30961	0.0001676	541.345357614339	49.266	0.84486	49.266	48.856	49.701	0					71	30	3	0	0	0	0.11461	1	11317	11317		36.127	14.38	1	912780			25793	7014;11134	14677	14678	32330	32330					0.139651062508392
LPSLRRLNL	9	Unmodified	_LPSLRRLNL_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000488221.5_1_17:18156710-18157010:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII;ENST00000488221.5_1_17:18156710-18157010:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.3458251953125	2	541.345658	1080.67676	0.4713	0.00025514	-0.34627	-0.00018745	0.12503	6.7686E-05	541.3453866742893	49.314	0.91534	49.359	48.961	49.877	0.044891					70	33	3	0	0	0	0.2322	1	11335	11335		14.838	3.198	1	1205000			25794	7014;11134	14677	14678	32331	32331					0.139651062508392
LPSLRRLNL	9	Unmodified	_LPSLRRLNL_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000488221.5_1_17:18156710-18157010:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII;ENST00000488221.5_1_17:18156710-18157010:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.3458862304688	2	541.345658	1080.67676	0.41595	0.00022517	-0.22786	-0.00012335	0.18809	0.00010182	541.3454673651903	49.292	0.75098	49.324	48.904	49.655	0.032043					67	26	4	0	0	0	0.19747	1	11293	11293		24.021	4.7636	1	1018200			25795	7014;11134	14677	14678	32332	32332					0.139651062508392
LPSPHKRAP	9	Unmodified	_LPSPHKRAP_					0	0	0		ENSG00000176302|ENST00000317011|FOXR1	ENSG00000176302|ENST00000317011|FOXR1	ENSG00000176302|ENST00000317011|FOXR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2803649902344	2	501.795801	1001.57705	0.65769	0.00033002	-0.8242	-0.00041358	-0.16652	-8.3558E-05	501.79533396858363	37.043	0.71604	37.043	36.787	37.503	0					33	25	2	0	0	0	0.22596	1	7646	7646		15.847	0	1	282280			25796	6919	14678	14679	32333	32333					0.07632288636887097
LPSPHKRAP	9	Unmodified	_LPSPHKRAP_					0	0	0		ENSG00000176302|ENST00000317011|FOXR1	ENSG00000176302|ENST00000317011|FOXR1	ENSG00000176302|ENST00000317011|FOXR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.28033447265625	2	501.795801	1001.57705	0.63868	0.00032049	-0.4784	-0.00024006	0.16027	8.0424E-05	501.79560143821453	36.93	0.65567	37.023	36.74	37.395	0.093018					36	23	3	0	0	0	0.20651	1	7599	7599		26.884	5.137	1	330320			25797	6919	14678	14679	32334	32334					0.07632288636887097
LPSPLLCLLL	10	Unmodified	_LPSPLLCLLL_					0	0	0		ENSG00000186907|ENST00000335099|RTN4RL2	ENSG00000186907|ENST00000335099|RTN4RL2	ENSG00000186907|ENST00000335099|RTN4RL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7741088867188	2	541.338121	1080.66169	0.71515	0.00038714	-0.46565	-0.00025207	0.2495	0.00013506	541.3376585443243	86.421	1.3632	86.412	85.918	87.282	-0.0090027					62	39	2	0	0	0	0.3198	1	22687	22687		1.8442	0	1	225230			25798	7654	14679	14680	32335	32335					0.12458478338635359
LPSPLRREKL	10	Unmodified	_LPSPLRREKL_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.587158203125	3	403.587307	1207.74009	-0.10289	-4.1526E-05	0.1992	8.0394E-05	0.096308	3.8869E-05	403.5872898026043	31.744	0.78754	31.785	31.447	32.234	0.040991					46	27	2	0	0	0	0.32615	1	5968	5968		17.049	0.77403	1	1300200			25799	1632	14680	14681	32336	32336					0.14453046968083072
LPSPPAVAV	9	Unmodified	_LPSPPAVAV_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.75543212890625	2	425.755278	849.496004	0.044111	1.878E-05	-0.049191	-2.0943E-05	-0.00508	-2.1629E-06	425.7551950310093	58.526	0.75689	58.526	58.075	58.832	0					46	25	2	0	0	0	0.28128	1	14209	14209		11.64	2.2929	1	278470			25800	6155	14681	14682	32337	32337					0.06523587874141867
LPSPPAVAV	9	Unmodified	_LPSPPAVAV_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.2633361816406	2	425.755278	849.496004	-0.043526	-1.8531E-05	0.2024	8.6173E-05	0.15888	6.7642E-05	425.75530847624833	58.474	0.84597	58.565	58.003	58.849	0.091305					51	29	2	0	0	0	0.24311	1	14231	14231		16.942	4.4107	1	265480			25801	6155	14681	14682	32338	32338					0.06523587874141867
LPSPSHTL	8	Unmodified	_LPSPSHTL_					0	0	0			REV__ENST00000546918.1_1_12:49580240-49580357:-|nuORF	REV__ENST00000546918.1_1_12:49580240-49580357:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2471618652344	2	426.23471	850.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.873	1	70.873	70.373	71.373	0								0	0	0	0.33625	1	17985	17985		20.871	1.4322	1		+		25802	22172	14682	14683	32339	32339					0.023658268346594014
LPSPSPRISL	10	Unmodified	_LPSPSPRISL_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.81640625	2	533.816399	1065.61824	0.54094	0.00028876	-0.22136	-0.00011816	0.31958	0.0001706	533.8161638151645	52.533	0.72614	52.533	52.123	52.849	0					49	25	3	0	0	0	0.076018	1	12352	12352		53.317	3.7624	1	844460			25803	5464	14683	14684	32340	32340					0.08806004885695984
LPSPSPRISL	10	Unmodified	_LPSPSPRISL_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.8162841796875	2	533.816399	1065.61824	0.43163	0.00023041	-0.10832	-5.7825E-05	0.32331	0.00017259	533.8161080639085	52.528	0.92214	52.579	51.985	52.907	0.050571					60	33	3	0	0	0	0.018653	1	12358	12358		73.196	23.642	1	827980			25804	5464	14683	14684	32341	32341					0.08806004885695984
LPSPSPRISL	10	Unmodified	_LPSPSPRISL_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	533.816399	1065.61824	0.35986	0.0001921	-0.11292	-6.028E-05	0.24694	0.00013182	533.8161756171141	52.595	0.81367	52.594	52.115	52.929	-0.00080872	0.025593	4.3601E-05	NaN	73.196	54	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1154900			25805	5464	14683	14684							0.08806004885695984
LPSPSWAQL	9	Unmodified	_LPSPSWAQL_					0	0	0			REV__ENST00000469449.1_1_2:219252516-219252801:+|nuORF	REV__ENST00000469449.1_1_2:219252516-219252801:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7691345214844	2	499.768917	997.523281	0.2016	0.00010075	0.30275	0.0001513	0.50435	0.00025206	499.7690755266934	64.962	0.84468	64.962	64.673	65.518	0					74	30	3	0	0	0	0.18803	1	16239	16239		25.399	3.6527	1	2225900	+		25806	21341	14684	14685	32342	32342					0.02442071414509428
LPSQKTASL	9	Unmodified	_LPSQKTASL_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.291748046875	2	472.7742	943.533846	0.30775	0.0001455	-0.26069	-0.00012325	0.04706	2.2249E-05	472.7742076303508	29.34	0.51689	29.34	29.142	29.659	0					27	18	2	0	0	0	0.22061	1	5259	5259		24.021	4.5816	1	132230			25807	5445	14685	14686	32343	32343					0.059820540689429436
LPSQKTASL	9	Unmodified	_LPSQKTASL_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2916259765625	2	472.7742	943.533846	0.21912	0.00010359	0.27872	0.00013177	0.49784	0.00023537	472.77441645452916	29.289	0.47918	29.302	29.08	29.56	0.012266					25	16	2	0	0	0	0.23235	1	5240	5240		21.537	21.537	1	156880			25808	5445	14685	14686	32344	32344					0.059820540689429436
LPSQSRYSIAF	11	Unmodified	_LPSQSRYSIAF_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.8360595703125	2	634.83532	1267.65609	0.4547	0.00028866	-0.20717	-0.00013152	0.24753	0.00015714	634.8351009561773	53.837	0.36821	53.894	53.74	54.108	0.056259					20	13	2	0	0	0	0.19522	1	12755	12755		31.636	13.489	1	147740			25809	760	14686	14687	32345	32345					0.03296471080511765
LPSQSRYSIAF	11	Unmodified	_LPSQSRYSIAF_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	634.83532	1267.65609	0.58362	0.0003705	-0.18614	-0.00011817	0.39748	0.00025234	634.8352978603507	53.959	0.32899	53.959	53.776	54.105	0	-0.053758	7.6306E-05	NaN	31.636	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175000			25810	760	14686	14687							0.03296471080511765
LPSQSRYSIAF	11	Unmodified	_LPSQSRYSIAF_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	634.83532	1267.65609	0.69112	0.00043875	-0.375	-0.00023806	0.31612	0.00020069	634.8350789573481	54.201	0.33191	54.185	53.978	54.31	-0.015923	0.1726	-0.00016348	NaN	31.636	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169850			25811	760	14686	14687							0.03296471080511765
LPSQVEDTL	9	Unmodified	_LPSQVEDTL_					0	0	0		ENSG00000101342|ENST00000217320|TLDC2	ENSG00000101342|ENST00000217320|TLDC2	ENSG00000101342|ENST00000217320|TLDC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2909851074219	2	501.261122	1000.50769	0.53526	0.00026831	-3.2028	-0.0016054	-2.6675	-0.0013371	501.25948941718104	74.651	0.11429	74.62	74.558	74.672	-0.03125					5	3	2	0	0	0	0.24913	1	19123	19123		4.3292	0	1	91949			25812	1685	14687	14688	32346	32346					0.007457401068108993
LPSRHKNG	8	Unmodified	_LPSRHKNG_					0	0	0			REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.20831298828125	2	454.756675	907.498798	0.3992	0.00018154	0.13418	6.102E-05	0.53338	0.00024256	454.7567830059601	65.817	0.69521	65.817	65.488	66.183	0					49	24	3	0	0	0	0.32435	1	16418	16418		23.148	23.148	1	384950	+		25813	22166	14688	14689	32347	32347					0.041348560516553334
LPSRHKNG	8	Unmodified	_LPSRHKNG_					0	0	0			REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.20843505859375	2	454.756675	907.498798	0.31107	0.00014146	0.52815	0.00024018	0.83922	0.00038164	454.7568059754782	65.698	0.62047	65.787	65.519	66.139	0.088882					37	22	2	0	0	0	0.32435	1	16412	16412		23.148	23.148	1	400200	+		25814	22166	14688	14689	32348	32348					0.041348560516553334
LPSRHKNG	8	Unmodified	_LPSRHKNG_					0	0	0			REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	REV__ENST00000546136.5_1_12:23687301-23689558:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2083435058594	2	454.756675	907.498798	0.3133	0.00014248	0.25061	0.00011397	0.56391	0.00025644	454.75682956043073	65.816	0.50772	65.805	65.558	66.066	-0.01133					35	17	4	0	0	0	0.32435	1	16455	16455		23.148	23.148	1	382600	+		25815	22166	14688	14689	32349	32349					0.041348560516553334
LPSRKLVAL	9	Unmodified	_LPSRKLVAL_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.8320007324219	2	498.831852	995.649151	0.47145	0.00023517	-0.021797	-1.0873E-05	0.44965	0.0002243	498.8317448468189	37.953	1.0343	37.953	37.707	38.741	0					76	36	4	0	0	0	0.011693	2	7837	7837;7881		76.825	32.966	1	1767600			25816	3391	14689	14690	32350;32351	32350					0.15115202990614307
LPSRKLVAL	9	Unmodified	_LPSRKLVAL_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8319091796875	2	498.831852	995.649151	0.43437	0.00021668	-0.065844	-3.2845E-05	0.36852	0.00018383	498.8317258947797	37.858	0.81743	37.949	37.693	38.511	0.090881					65	29	3	0	0	0	0.0054984	3	7816	7816;7862;7918		86.332	40.632	1	1682300			25817	3391	14689	14690	32352;32353;32354	32352					0.15115202990614307
LPSRKLVAL	9	Unmodified	_LPSRKLVAL_					0	0	0		nc|ENSG00000128789|Q969U7-2|PSMG2;ENSG00000128789|ENST00000317615|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	nc|ENSG00000128789|Q969U7-2|PSMG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.8318786621094	2	498.831852	995.649151	0.31624	0.00015775	0.15276	7.6201E-05	0.469	0.00023395	498.83183873073745	37.804	0.91343	37.901	37.604	38.517	0.097527					67	32	3	0	0	0	0.011693	2	7835	7789;7835		76.825	32.966	1	1687400			25818	3391	14689	14690	32355;32356	32356					0.15115202990614307
LPSRLGLLL	9	Unmodified	_LPSRLGLLL_					0	0	0		ENSG00000115596|ENST00000233948|WNT6	ENSG00000115596|ENST00000233948|WNT6	ENSG00000115596|ENST00000233948|WNT6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.3263244628906	2	491.326402	980.638252	0.070008	3.4397E-05	-0.035264	-1.7326E-05	0.034744	1.7071E-05	491.3263089693142	60.214	0.72863	60.214	60.035	60.764	0					58	26	3	0	0	0	0.04299	3	14741	14694;14741;14793		55.503	0	1	2229000			25819	2662	14690	14691	32357;32358;32359	32358					0.1471580061631812
LPSRLGLLL	9	Unmodified	_LPSRLGLLL_					0	0	0		ENSG00000115596|ENST00000233948|WNT6	ENSG00000115596|ENST00000233948|WNT6	ENSG00000115596|ENST00000233948|WNT6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.3263244628906	2	491.326402	980.638252	-0.20972	-0.00010304	0.25805	0.00012679	0.048337	2.3749E-05	491.3264165900822	60.118	0.93295	60.213	59.961	60.894	0.095093					66	33	3	0	0	0	0.048637	2	14702	14650;14702		53.404	0	1	2100300			25820	2662	14690	14691	32360;32361	32361					0.1471580061631812
LPSRLGLLL	9	Unmodified	_LPSRLGLLL_					0	0	0		ENSG00000115596|ENST00000233948|WNT6	ENSG00000115596|ENST00000233948|WNT6	ENSG00000115596|ENST00000233948|WNT6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.32623291015625	2	491.326402	980.638252	0.18338	9.01E-05	-0.088762	-4.3611E-05	0.09462	4.6489E-05	491.32629631036616	60.192	0.76601	60.181	59.94	60.706	-0.011486					68	27	4	0	0	0	0.04299	3	14712	14660;14712;14760		55.503	0	1	2244700			25821	2662	14690	14691	32362;32363;32364	32363					0.1471580061631812
LPSRNSLL	8	Unmodified	_LPSRNSLL_					0	0	0		ENSG00000257057|ENST00000542198|C11orf97	REV__ENST00000563581.1_1_16:34641293-34641696:-|nuORF	REV__ENST00000563581.1_1_16:34641293-34641696:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.24713134765625	2	450.269084	898.523616	0.21742	9.7899E-05	0.36408	0.00016393	0.5815	0.00026183	450.26951466501964	67.213	1.3222	67.291	66.847	68.169	0.078041					81	46	3	0	0	0	0.33995	1	16998	16998		15.768	1.1865	1	137200			25822	8631	14691	14692	32365	32365					0.07029491134380805
LPSSGRSSL	9	Unmodified	_LPSSGRSSL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2479248046875	2	452.248349	902.482145	0.034841	1.5757E-05	-0.070261	-3.1775E-05	-0.03542	-1.6019E-05	452.2481203027466	25.583	1.2602	25.583	25.239	26.499	0					95	43	5	0	0	0	0.0040516	2	4113	4070;4113		93.938	7.6063	1	2854000			25823	4992	14692	14693	32366;32367	32367					0.027003103750416813
LPSSGRSSL	9	Unmodified	_LPSSGRSSL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2484130859375	2	452.248349	902.482145	-0.11351	-5.1337E-05	-0.022658	-1.0247E-05	-0.13617	-6.1584E-05	452.248160214201	25.617	1.0109	25.561	25.314	26.325	-0.055931					75	35	5	0	0	0	0.0066776	2	4141	4092;4141		84.522	7.6974	1	3066500			25824	4992	14692	14693	32368;32369	32369					0.027003103750416813
LPSSGRSSL	9	Unmodified	_LPSSGRSSL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2479248046875	2	452.248349	902.482145	-0.065505	-2.9624E-05	-0.30149	-0.00013635	-0.36699	-0.00016597	452.2479801045507	25.645	1.053	25.623	25.356	26.409	-0.022715					75	37	4	0	0	0	0.0032746	2	4091	4091;4140		100.09	7.5348	1	3318600			25825	4992	14692	14693	32370;32371	32370					0.027003103750416813
LPSSGTFNI	9	Unmodified	_LPSSGTFNI_					0	0	0		ENST00000299980.8_2_16:71766447-71766639:-|nuORF	ENST00000299980.8_2_16:71766447-71766639:-|nuORF	ENST00000299980.8_2_16:71766447-71766639:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.2890319824219	2	468.245275	934.475997	0.12417	5.814E-05	-1.4453	-0.00067676	-1.3211	-0.00061862	468.2432815801007	73.76	0.29896	73.729	73.556	73.855	-0.030655					15	10	2	0	0	0	0.21905	1	18806	18806		16.942	7.5949	1	85980			25826	9218	14693	14694	32372	32372					0.006137921435083626
LPSSLEEVTEF	11	Unmodified	_LPSSLEEVTEF_					0	0	0			REV__ENSG00000116745|ENST00000262340|RPE65	REV__ENSG00000116745|ENST00000262340|RPE65	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.560791015625	3	417.543209	1249.6078	-0.72696	-0.00030354	0.92421	0.0003859	0.19725	8.236E-05	417.5434459417015	35.269	0.79974	35.269	34.775	35.575	0					60	28	3	0	0	0	0.329	1	7130	7130		4.7159	1.3963	1	652710	+		25827	14934	14694	14695	32373	32373					-0.007020673500619523
LPSSLEEVTEF	11	Unmodified	_LPSSLEEVTEF_					0	0	0			REV__ENSG00000116745|ENST00000262340|RPE65	REV__ENSG00000116745|ENST00000262340|RPE65	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.5609436035156	3	417.543209	1249.6078	-0.49486	-0.00020662	0.46269	0.00019319	-0.032162	-1.3429E-05	417.5432927351477	35.209	0.82088	35.285	34.713	35.533	0.075306					63	29	4	0	0	0	0.329	1	7097	7097		4.7159	0	1	587960	+		25828	14934	14694	14695	32374	32374					-0.007020673500619523
LPSSLYLKI	9	Unmodified	_LPSSLYLKI_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1;ENST00000548979.1_1_12:46591442-46591783:-|nuORF	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3182373046875	2	517.318243	1032.62193	0.37878	0.00019595	-0.57223	-0.00029603	-0.19346	-0.00010008	517.3185256082099	63.029	1.4123	63.029	62.476	63.889	0					106	51	3	0	0	0	0.00012108	2	15556	15549;15556		137.42	56.424	1	5246900			25829	2364	14695	14696	32375;32376	32376					0.10692674659549084
LPSSLYLKI	9	Unmodified	_LPSSLYLKI_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1;ENST00000548979.1_1_12:46591442-46591783:-|nuORF	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3180541992188	2	517.318243	1032.62193	0.36123	0.00018687	-0.8537	-0.00044163	-0.49247	-0.00025476	517.3184534502826	62.939	1.5995	63.034	62.52	64.119	0.095722					120	57	4	0	0	0	0.00078391	1	15509	15509		125.53	36.575	1	4796100			25830	2364	14695	14696	32377	32377					0.10692674659549084
LPSSLYLKI	9	Unmodified	_LPSSLYLKI_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1;ENST00000548979.1_1_12:46591442-46591783:-|nuORF	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.3180541992188	2	517.318243	1032.62193	0.23701	0.00012261	-0.74575	-0.00038579	-0.50875	-0.00026318	517.3185236212196	63.007	1.2537	62.998	62.465	63.719	-0.0085526					113	45	4	0	0	0	4.3881E-05	1	15546	15546		149.91	38.627	1	4582000			25831	2364	14695	14696	32378	32378					0.10692674659549084
LPSSPNLSL	9	Unmodified	_LPSSPNLSL_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.2603454589844	2	464.260925	926.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.711	1	69.777	69.277	70.277	0.066048								0	0	0	0.1027	1	17625	17625		45.7	0	1				25832	8172	14696	14697	32379	32379					0.04110365177609765
LPSSRGSLS	9	Unmodified	_LPSSRGSLS_					0	0	0		ENST00000336505.10_1_9:127757231-127762172:-|nuORF	ENST00000336505.10_1_9:127757231-127762172:-|nuORF	ENST00000336505.10_1_9:127757231-127762172:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2490234375	2	452.248349	902.482145	0.034841	1.5757E-05	-0.070261	-3.1775E-05	-0.03542	-1.6019E-05	452.2481203027466	25.583	1.2602	25.583	25.239	26.499	0					95	43	5	0	0	0	0.063853	1	4157	4157		47.749	3.9763	1	2854000			25833	9487	14697	14698	32380	32380					0.027003103750644186
LPSSRRQL	8	Unmodified	_LPSSRRQL_					0	0	0		BCL3|p.F434Cfs*32|1|0.28|ENSG00000069399|chr19:44759549-44759550|CT/-|frameshift_variant	BCL3|p.F434Cfs*32|1|0.28|ENSG00000069399|chr19:44759549-44759550|CT/-|frameshift_variant	BCL3|p.F434Cfs*32|1|0.28|ENSG00000069399|chr19:44759549-44759550|CT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7369689941406	2	478.785433	955.556313	0.23966	0.00011474	-0.83125	-0.00039799	-0.5916	-0.00028325	478.78515015783523	79.546	1.0583	79.546	79.119	80.177	0					65	40	2	0	0	0	0.3366	1	20654	20654		7.9102	0	1	311570			25834	73	14698	14699	32381	32381					0.07675698257230579
LPSSRRQL	8	Unmodified	_LPSSRRQL_					0	0	0		BCL3|p.F434Cfs*32|1|0.28|ENSG00000069399|chr19:44759549-44759550|CT/-|frameshift_variant	BCL3|p.F434Cfs*32|1|0.28|ENSG00000069399|chr19:44759549-44759550|CT/-|frameshift_variant	BCL3|p.F434Cfs*32|1|0.28|ENSG00000069399|chr19:44759549-44759550|CT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.73699951171875	2	478.785433	955.556313	0.32606	0.00015611	-0.96535	-0.00046219	-0.63929	-0.00030608	478.78510035753413	79.412	1.1649	79.474	79.201	80.366	0.061417					75	46	2	0	0	0	0.34046	1	20569	20569		5.2307	0	1	382930			25835	73	14698	14699	32382	32382					0.07675698257230579
LPSSVISAI	9	Unmodified	_LPSSVISAI_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF;ENST00000560083.1_1_17:78362921-78367295:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.765869140625	2	443.765843	885.517133	0.41556	0.00018441	-0.19024	-8.4421E-05	0.22532	9.999E-05	443.76567479214384	65.78	1.1415	65.768	65.372	66.513	-0.011337					112	41	4	0	0	0	0.0032391	1	16441	16441		100.37	15.099	1	3634600			25836	6752	14699	14700	32383	32383					0.0697955318298682
LPSSWILV	8	Unmodified	_LPSSWILV_					0	0	0		KLRC2|p.G174Lfs*13|1|0.55|ENSG00000205809|chr12:10432170-10432171|-/AA|frameshift_variant	KLRC2|p.G174Lfs*13|1|0.55|ENSG00000205809|chr12:10432170-10432171|-/AA|frameshift_variant	KLRC2|p.G174Lfs*13|1|0.55|ENSG00000205809|chr12:10432170-10432171|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.77081298828125	2	457.770929	913.527304	0.31615	0.00014472	0.88908	0.00040699	1.2052	0.00055172	457.77098268169004	84.736	2.9578	84.736	83.427	86.385	0					175	113	2	0	0	0	0.33916	2	22354	22306;22354		26.341	5.4701	1	567380			25837	12432	14700	14701	32384;32385	32385					0.06708160908237915
LPSSWILV	8	Unmodified	_LPSSWILV_					0	0	0		KLRC2|p.G174Lfs*13|1|0.55|ENSG00000205809|chr12:10432170-10432171|-/AA|frameshift_variant	KLRC2|p.G174Lfs*13|1|0.55|ENSG00000205809|chr12:10432170-10432171|-/AA|frameshift_variant	KLRC2|p.G174Lfs*13|1|0.55|ENSG00000205809|chr12:10432170-10432171|-/AA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.77093505859375	2	457.770929	913.527304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.876	1	84.957	84.457	85.457	0.080887								0	0	0	0.33941	1	22264	22264		19.439	0	1				25838	12432	14700	14701	32386	32386					0.06708160908237915
LPSSWILV	8	Unmodified	_LPSSWILV_					0	0	0		KLRC2|p.G174Lfs*13|1|0.55|ENSG00000205809|chr12:10432170-10432171|-/AA|frameshift_variant	KLRC2|p.G174Lfs*13|1|0.55|ENSG00000205809|chr12:10432170-10432171|-/AA|frameshift_variant	KLRC2|p.G174Lfs*13|1|0.55|ENSG00000205809|chr12:10432170-10432171|-/AA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7712707519531	2	457.770929	913.527304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.052	1	85.133	84.633	85.633	0.080887								0	0	0	0.31676	1	22318	22318		26.341	0	1				25839	12432	14700	14701	32387	32387					0.06708160908237915
LPSSWILV	8	Unmodified	_LPSSWILV_					0	0	0		KLRC2|p.G174Lfs*13|1|0.55|ENSG00000205809|chr12:10432170-10432171|-/AA|frameshift_variant	KLRC2|p.G174Lfs*13|1|0.55|ENSG00000205809|chr12:10432170-10432171|-/AA|frameshift_variant	KLRC2|p.G174Lfs*13|1|0.55|ENSG00000205809|chr12:10432170-10432171|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7706604003906	2	457.770929	913.527304	0.3664	0.00016773	0.51209	0.00023442	0.87849	0.00040215	457.77069776290426	84.176	3.8803	84.159	83.187	87.067	-0.016823					197	157	2	0	0	0	0.33916	1	22009	22009		26.341	5.4701	1	524570			25840	12432	14700	14701	32388	32388					0.06708160908237915
LPSSWILV	8	Unmodified	_LPSSWILV_					0	0	0		KLRC2|p.G174Lfs*13|1|0.55|ENSG00000205809|chr12:10432170-10432171|-/AA|frameshift_variant	KLRC2|p.G174Lfs*13|1|0.55|ENSG00000205809|chr12:10432170-10432171|-/AA|frameshift_variant	KLRC2|p.G174Lfs*13|1|0.55|ENSG00000205809|chr12:10432170-10432171|-/AA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7709655761719	2	457.770929	913.527304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.031	1	85.018	84.518	85.518	-0.01284								0	0	0	0.33941	1	22304	22304		19.439	0	1				25841	12432	14700	14701	32389	32389					0.06708160908237915
LPSTRLGTL	9	Unmodified	_LPSTRLGTL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.30267333984375	2	479.290017	956.565481	0.53258	0.00025526	-0.065976	-3.1621E-05	0.4666	0.00022364	479.2899178707895	45.69	0.52192	45.69	45.452	45.974	0					32	18	2	0	0	0	0.09758	1	10210	10210		38.615	0.64075	1	894100			25842	7937;11149	14701	14702	32390	32390					0.08546046822914377
LPSTRLGTL	9	Unmodified	_LPSTRLGTL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.30255126953125	2	479.290017	956.565481	0.42753	0.00020491	0.045888	2.1994E-05	0.47342	0.0002269	479.2899890416096	45.581	0.48268	45.641	45.361	45.844	0.059837					30	16	2	0	0	0	0.059067	1	10187	10187		49.527	9.5775	1	1093700			25843	7937;11149	14701	14702	32391	32391					0.08546046822914377
LPSTVPLESF	10	Unmodified	_LPSTVPLESF_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6|DMXL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3162841796875	2	545.294965	1088.57538	0.80038	0.00043644	-0.96583	-0.00052666	-0.16545	-9.022E-05	545.2943924149782	85.687	1.6131	85.678	84.866	86.479	-0.0090103					82	62	2	0	0	0	0.31629	1	22440	22440		10.074	0.6908	1	307230	+		25844	14395	14702	14703	32392	32392					0.034631900376325575
LPSVDLKEET	10	Unmodified	_LPSVDLKEET_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1;ENST00000490674.1_1_2:113416436-113416796:+|nuORF	ENSG00000144136|ENST00000272542|SLC20A1;ENST00000490674.1_1_2:113416436-113416796:+|nuORF	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7801513671875	2	565.800611	1129.58667	0.87062	0.0004926	-0.57283	-0.00032411	0.29779	0.00016849	566.3010889218417	50.618	0.40686	50.639	50.387	50.794	0.020691					35	14	4	0	0	0	0.31267	1	11769	11769		10.074	0	1	227930			25845	4568;11162	14703	14704	32393	32393					0.02705967341057658
LPSVHIFLPSK	11	Unmodified	_LPSVHIFLPSK_					0	0	0		ENSG00000110046|ENST00000377264|ATG2A;nc|ENSG00000110046|Q2TAZ0-3|ATG2A	ENSG00000110046|ENST00000377264|ATG2A	ENSG00000110046|ENST00000377264|ATG2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.3702392578125	2	619.368798	1236.72304	0.11984	7.4222E-05	1.672	0.0010356	1.7918	0.0011098	619.3707405203077	91.712	1.9109	91.803	91.166	93.077	0.090675					275	137	3	0	0	0	0.43149	2	24358	24358;24445		7.1017	1.3699	1	768030			25846	2290	14704	14705	32394;32395	32394					0.11415126362248884
LPSVHIFLPSK	11	Unmodified	_LPSVHIFLPSK_					0	0	0		ENSG00000110046|ENST00000377264|ATG2A;nc|ENSG00000110046|Q2TAZ0-3|ATG2A	ENSG00000110046|ENST00000377264|ATG2A	ENSG00000110046|ENST00000377264|ATG2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.3707885742188	2	619.368798	1236.72304	0.37078	0.00022965	1.7351	0.0010747	2.1059	0.0013043	619.370569418945	91.757	1.4647	91.757	91.303	92.768	0.00046539					206	95	3	0	0	0	0.45367	1	24403	24403		4.1895	0.59301	1	1022300			25847	2290	14704	14705	32396	32396					0.11415126362248884
LPSVPGRSL	9	Unmodified	_LPSVPGRSL_					0	0	0			REV__ENSG00000174276|ENST00000310597|ZNHIT2	REV__ENSG00000174276|ENST00000310597|ZNHIT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2771301269531	2	463.276909	924.539266	0.042671	1.9769E-05	0.64675	0.00029963	0.68942	0.00031939	463.27705056781394	47.041	0.67043	47.094	46.817	47.487	0.052574					40	24	2	0	0	0	0.20626	1	10706	10706		22.736	22.736	1	515530	+		25848	17822	14705	14706	32397	32397					0.07397777651419801
LPSVPPSI	8	Unmodified	_LPSVPPSI_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2419128417969	2	405.242004	808.469455	0.15454	6.2626E-05	0.010789	4.372E-06	0.16533	6.6998E-05	405.24183404705974	54.993	1.6596	55.056	54.353	56.013	0.063202					117	61	2	0	0	0	0.082568	1	13042	13042		63.563	0	1	1441300			25849	2315	14706	14707	32398	32398					0.057558989827953155
LPSVPPSI	8	Unmodified	_LPSVPPSI_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2420654296875	2	405.242004	808.469455	0.17147	6.9486E-05	-0.22534	-9.1319E-05	-0.053875	-2.1832E-05	405.24177781226496	55.034	2.0462	55.018	54.224	56.27	-0.015923					133	74	2	0	0	0	0.082568	1	13119	13119		63.563	0	1	1445700			25850	2315	14706	14707	32399	32399					0.057558989827953155
LPSVSSLPF	9	Unmodified	_LPSVSSLPF_					0	0	0		ENSG00000243716|ENST00000424340|NPIPB5;ENSG00000185864|ENST00000682606|NPIPB4;ENSG00000169203|ENST00000550665|NPIPB12;ENSG00000254206|ENST00000698511|NPIPB11;nc|ENSG00000243716|C9JG80|NPIPB4;ENSG00000198064|ENST00000697092|NPIPB13;nc|ENSG00000169246|Q92617|NPIPB3;nc|ENSG00000169246|Q92617-6|NPIPB3;nc|ENSG00000169246|Q92617-5|NPIPB3;ENST00000415654.1_16:22545826-22546048:+|nuORF	ENSG00000243716|ENST00000424340|NPIPB5	ENSG00000243716|ENST00000424340|NPIPB5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2909240722656	2	473.765843	945.517133	0.20155	9.5489E-05	2.9529	0.001399	3.1545	0.0014945	473.76593124219687	72.531	1.4816	72.531	71.911	73.392	0					70	53	2	0	0	0	0.18943	1	18709	18709		30.225	0	1	159280			25851	8560	14707	14708	32400	32400					0.04219553182997515
LPSVTLTKQRR	11	Unmodified	_LPSVTLTKQRR_					0	0	0			REV__ENST00000237536.8_2_20:35406384-35406558:-|nuORF	REV__ENST00000237536.8_2_20:35406384-35406558:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8983764648438	2	649.898786	1297.78302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.133	1	93.222	92.722	93.722	0.089195								0	0	0	0.34763	1	24791	24791		10.8	2.644	1		+		25852	19482	14708	14709	32401	32401					0.14603817025499666
LPSVTLTKQRR	11	Unmodified	_LPSVTLTKQRR_					0	0	0			REV__ENST00000237536.8_2_20:35406384-35406558:-|nuORF	REV__ENST00000237536.8_2_20:35406384-35406558:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.898193359375	2	649.898786	1297.78302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.256	1	93.255	92.755	93.755	-0.00051117								0	0	0	0.32896	1	24829	24829		11.495	3.3392	1		+		25853	19482	14708	14709	32402	32402					0.14603817025499666
LPSWISLEI	9	Unmodified	_LPSWISLEI_					0	0	0		ENST00000458385.6_1_4:186112325-186125079:-|nuORF	ENST00000458385.6_1_4:186112325-186125079:-|nuORF	ENST00000458385.6_1_4:186112325-186125079:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8139038085938	2	529.30005	1056.58555	0.5906	0.00031261	0.9541	0.00050501	1.5447	0.00081761	529.3005103904234	72.432	0.40219	72.432	72.158	72.56	0					27	14	2	0	0	0	0.1659	1	18411	18411		36.044	10.645	1	295910			25854	10710	14709	14710	32403	32403					0.059517977628502194
LPSYRPAPL	9	Unmodified	_LPSYRPAPL_					0	0	0		nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.74053955078125	2	507.292559	1012.57057	0.51461	0.00026106	0.38275	0.00019416	0.89735	0.00045522	507.2928014727987	46.841	0.2632	46.895	46.709	46.972	0.054371					11	8	2	0	0	0	0.22674	1	10559	10559		22.736	11.096	1	328380			25855	5248	14710	14711	32404	32404					0.06478350685517853
LPSYRPAPL	9	Unmodified	_LPSYRPAPL_					0	0	0		nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	507.292559	1012.57057	0.44703	0.00022678	0.22307	0.00011316	0.6701	0.00033994	507.2927914973783	46.81	0.32657	46.863	46.603	46.929	0.052574	-0.016359	-0.00010285	NaN	22.736	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214400			25856	5248	14710	14711							0.06478350685517853
LPTALITVQQK	11	Unmodified	_LPTALITVQQK_					0	0	0			REV__ENST00000565483.1_1_16:31045337-31045892:+|nuORF	REV__ENST00000565483.1_1_16:31045337-31045892:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.370361328125	2	606.371538	1210.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.64	1	117.67	117.17	118.17	0.023476								0	0	0	0.38222	1	30486	30486		0	0	1		+		25857	14377	14711	14712	32405	32405					0.13158805154057518
LPTCYGPL	8	Unmodified	_LPTCYGPL_					0	0	0		ENSG00000111087|ENST00000228682|GLI1;nc|ENSG00000111087|P08151-2|GLI1;nc|ENSG00000111087|P08151-3|GLI1	ENSG00000111087|ENST00000228682|GLI1	ENSG00000111087|ENST00000228682|GLI1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.21319580078125	2	432.220214	862.425876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.02	1	53.01	52.51	53.51	-0.0096054								0	0	0	0.34752	1	12481	12481		15.768	2.2603	1				25858	2348	14712	14713	32406	32406					-0.010840337859804094
LPTDVLIAN	9	Unmodified	_LPTDVLIAN_					0	0	0			REV__ENSG00000159720|ENST00000290949|ATP6V0D1	REV__ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.805419921875	2	478.276575	954.538597	-1.1569	-0.00055331	-0.039526	-1.8904E-05	-1.1964	-0.00057221	478.27639226895735	34.898	0.4223	34.973	34.788	35.21	0.075306					23	14	2	0	0	0	0.25323	1	6892	6892		10.074	0	1	159330	+		25859	16865	14713	14714	32407	32407					0.0595093821170849
LPTEAQAQV	9	Unmodified	_LPTEAQAQV_					0	0	0		nc|ENSG00000140577|Q6UUV7-3|CRTC3;ENSG00000140577|ENST00000268184|CRTC3	nc|ENSG00000140577|Q6UUV7-3|CRTC3	nc|ENSG00000140577|Q6UUV7-3|CRTC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.9748840332031	2	478.756007	955.497461	-0.039128	-1.8733E-05	-0.49233	-0.00023571	-0.53146	-0.00025444	478.75622020160347	39.978	0.6311	39.978	39.595	40.226	0					35	22	2	0	0	0	0.18936	1	8446	8446		20.415	8.1739	1	273380			25860	4322	14714	14715	32408	32408					0.017931771722373924
LPTEAQAQV	9	Unmodified	_LPTEAQAQV_					0	0	0		nc|ENSG00000140577|Q6UUV7-3|CRTC3;ENSG00000140577|ENST00000268184|CRTC3	nc|ENSG00000140577|Q6UUV7-3|CRTC3	nc|ENSG00000140577|Q6UUV7-3|CRTC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.974853515625	2	478.756007	955.497461	0.32858	0.00015731	-1.4486	-0.00069351	-1.12	-0.00053621	478.75612969290074	39.721	0.51644	39.814	39.635	40.151	0.092674					37	17	3	0	0	0	0.23235	1	8401	8401		11.495	3.5846	1	280700			25861	4322	14714	14715	32409	32409					0.017931771722373924
LPTEKEVAL	9	Unmodified	_LPTEKEVAL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2899169921875	2	500.289682	998.564812	0.27824	0.0001392	0.08517	4.261E-05	0.36341	0.00018181	500.2896166072617	42.811	0.4407	42.811	42.567	43.008	0					34	15	3	0	0	0	0.09758	1	9372	9372		38.615	0.64075	1	388740			25862	638	14715	14716	32410	32410					0.06547207383187015
LPTEKEVAL	9	Unmodified	_LPTEKEVAL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	500.289682	998.564812	0.19535	9.7732E-05	0.15474	7.7414E-05	0.35009	0.00017515	500.2896128761511	42.612	0.48787	42.697	42.434	42.922	0.085201	0.0055849	7.5427E-05	NaN	38.615	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485370			25863	638	14715	14716							0.06547207383187015
LPTEKEVAL	9	Unmodified	_LPTEKEVAL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	500.289682	998.564812	0.25879	0.00012947	-0.093557	-4.6806E-05	0.16523	8.2665E-05	500.2894046598783	42.474	0.55481	42.565	42.324	42.879	0.091362	-0.1259	-0.00017301	NaN	38.615	46	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395980			25864	638	14715	14716							0.06547207383187015
LPTEMQDLL	9	Unmodified	_LPTEMQDLL_					0	0	0			REV__ENST00000552252.1_1_14:25042845-25044048:-|nuORF	REV__ENST00000552252.1_1_14:25042845-25044048:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3135986328125	2	530.273175	1058.5318	0.52269	0.00027717	1.5577	0.00082603	2.0804	0.0011032	530.273928385328	63.178	0.32896	63.178	63.011	63.34	0					20	11	2	0	0	0	0.24289	1	15621	15621		18.146	5.1039	1	152250	+		25865	14200	14716	14717	32411	32411					0.004872572688327637
LPTETFIPVI	10	Unmodified	_LPTETFIPVI_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.3291015625	2	565.328808	1128.64306	0.39046	0.00022074	0.395	0.0002233	0.78545	0.00044404	565.3289932743263	87.08	0.69913	87.075	86.866	87.565	-0.0056229					65	31	3	0	0	0	0.2593	1	22942	22942		25.399	10.561	1	563230			25866	2868	14717	14718	32412	32412					0.083886399684161
LPTETFIPVI	10	Unmodified	_LPTETFIPVI_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	565.328808	1128.64306	0.43532	0.0002461	0.42945	0.00024278	0.86477	0.00048888	565.3290503019754	87.067	0.60662	87.067	86.857	87.463	0	-0.035047	3.0176E-05	NaN	25.399	67	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438520			25867	2868	14717	14718							0.083886399684161
LPTETFIPVI	10	Unmodified	_LPTETFIPVI_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	565.328808	1128.64306	0.43878	0.00024806	0.38697	0.00021876	0.82575	0.00046682	565.3290331402778	87.078	0.62196	87.165	86.859	87.481	0.08709	0.062759	-1.7858E-05	NaN	25.399	65	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	520170			25868	2868	14717	14718							0.083886399684161
LPTFSQPF	8	Unmodified	_LPTFSQPF_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.7283935546875	2	468.744911	935.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.195	1	62.195	61.695	62.695	0								0	0	0	0.32762	1	15329	15329		24.674	3.8027	1				25869	1079	14718	14719	32413	32413					0.004949974944793212
LPTFVRSI	8	Unmodified	_LPTFVRSI_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2229309082031	2	466.781828	931.549102	0.34417	0.00016065	-0.39212	-0.00018303	-0.047952	-2.2383E-05	466.7815827576864	54.863	0.75361	54.926	54.483	55.237	0.063206					41	27	2	0	0	0	0.32537	1	12939	12939		24.021	5.8856	1	488080			25870	5241	14719	14720	32414	32414					0.08058965656812234
LPTFVRSI	8	Unmodified	_LPTFVRSI_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	466.781828	931.549102	0.51837	0.00024197	-0.49638	-0.0002317	0.021996	1.0267E-05	466.7814920649217	55.074	0.78195	55.055	54.678	55.46	-0.019077	0.064511	-4.5545E-05	NaN	30.637	45	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	671060			25871	5241	14719	14720							0.08058965656812234
LPTHNIALI	9	Unmodified	_LPTHNIALI_					0	0	0			REV__nc|ENSG00000132849|Q8NI35-4|PATJ	REV__nc|ENSG00000132849|Q8NI35-4|PATJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.30035400390625	2	496.300384	990.586216	0.4013	0.00019917	-0.011744	-5.8288E-06	0.38956	0.00019334	496.30030442444985	66.867	0.59216	66.867	66.6	67.193	0					64	20	4	0	0	0	0.07432	1	16746	16746		43.858	3.901	1	1261900	+		25872	15590	14720	14721	32415	32415					0.0905463720255284
LPTHNIALI	9	Unmodified	_LPTHNIALI_					0	0	0			REV__nc|ENSG00000132849|Q8NI35-4|PATJ	REV__nc|ENSG00000132849|Q8NI35-4|PATJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3004150390625	2	496.300384	990.586216	0.3859	0.00019152	0.01565	7.7673E-06	0.40155	0.00019929	496.3002851329389	66.793	0.64419	66.876	66.544	67.188	0.083832					59	22	3	0	0	0	0.13748	2	16718	16718;16764		32.786	1.5173	1	1421900	+		25873	15590	14720	14721	32416;32417	32416					0.0905463720255284
LPTIRVPKA	9	Unmodified	_LPTIRVPKA_					0	0	0		nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5	nc|ENSG00000111667|P45974-2|USP5	nc|ENSG00000111667|P45974-2|USP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.316162109375	2	497.824027	993.633501	0.77184	0.00038424	-0.6308	-0.00031403	0.14105	7.0218E-05	497.8236560719762	60.625	0.48809	60.625	60.331	60.819	0					32	17	3	0	0	0	0.25202	1	14754	14754		6.7232	1.4925	1	633920			25874	2378	14721	14722	32418	32418					0.13642916473554578
LPTKERLV	8	Unmodified	_LPTKERLV_					0	0	0		ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.9298095703125	2	478.300384	954.586216	0.38373	0.00018354	-0.22516	-0.00010769	0.15857	7.5845E-05	478.30028507007836	44.676	0.49464	44.745	44.54	45.034	0.068569					28	17	2	0	0	0	0.3366	1	9903	9903		12.532	0	1	349290			25875	3353	14722	14723	32419	32419					0.10710637202566886
LPTKERLV	8	Unmodified	_LPTKERLV_					0	0	0		ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.9298095703125	2	478.300384	954.586216	0.43002	0.00020568	-0.0033092	-1.5828E-06	0.42672	0.0002041	478.30041388472955	44.636	0.4862	44.711	44.475	44.962	0.075047					27	17	2	0	0	0	0.3366	1	9936	9936		4.3292	0	1	386560			25876	3353	14722	14723	32420	32420					0.10710637202566886
LPTLEPLF	8	Unmodified	_LPTLEPLF_					0	0	0			REV__ENST00000479101.1_1_1:44707597-44713662:-|nuORF	REV__ENST00000479101.1_1_1:44707597-44713662:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.28582763671875	2	465.270761	928.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.442	1	80.415	79.915	80.915	-0.026825								0	0	0	0.37183	1	20891	20891		4.756	0.42677	1		+		25877	21463	14723	14724	32421	32421					0.05984741188387943
LPTLGARRTR	10	Unmodified	_LPTLGARRTR_					0	0	0		ENST00000222190.9_1_19:12779346-12779385:-|nuORF	ENST00000222190.9_1_19:12779346-12779385:-|nuORF	ENST00000222190.9_1_19:12779346-12779385:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.85107421875	2	570.851638	1139.68872	0.075625	4.3171E-05	-0.024342	-1.3895E-05	0.051283	2.9275E-05	570.8516134314708	23.585	0.4669	23.585	23.362	23.829	0					27	15	2	0	0	0	0.39009	1	3496	3496		5.2969	0.54088	1	91229			25878	8835	14724	14725	32422	32422					0.12446722994013726
LPTLGARRTR	10	Unmodified	_LPTLGARRTR_					0	0	0		ENST00000222190.9_1_19:12779346-12779385:-|nuORF	ENST00000222190.9_1_19:12779346-12779385:-|nuORF	ENST00000222190.9_1_19:12779346-12779385:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8515014648438	2	570.851638	1139.68872	0.27621	0.00015768	-0.11973	-6.8347E-05	0.15648	8.9329E-05	570.8515443082453	23.788	0.57041	23.716	23.396	23.966	-0.072559					33	19	3	0	0	0	0.39009	1	3561	3561		5.2969	1.3525	1	78472			25879	8835	14724	14725	32423	32423					0.12446722994013726
LPTLGARRTR	10	Unmodified	_LPTLGARRTR_					0	0	0		ENST00000222190.9_1_19:12779346-12779385:-|nuORF	ENST00000222190.9_1_19:12779346-12779385:-|nuORF	ENST00000222190.9_1_19:12779346-12779385:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8516845703125	2	570.851638	1139.68872	0.33806	0.00019298	-0.20857	-0.00011906	0.12949	7.392E-05	570.8514664993513	23.859	0.5465	23.82	23.562	24.108	-0.038927					31	18	3	0	0	0	0.39009	1	3585	3585		5.2969	1.3525	1	92186			25880	8835	14724	14725	32424	32424					0.12446722994013726
LPTLLQPLSF	10	Unmodified	_LPTLLQPLSF_					0	0	0		ENST00000352456.7_1_19:41812819-41812942:+|nuORF	ENST00000352456.7_1_19:41812819-41812942:+|nuORF	ENST00000352456.7_1_19:41812819-41812942:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.2850341796875	2	564.8368	1127.65905	0.389	0.00021972	-0.29073	-0.00016421	0.098271	5.5507E-05	565.3392053563442	51.723	0.13742	51.77	51.647	51.784	0.046574					7	4	2	0	0	0	0.31165	1	12054	12054		6.7232	0	1	210130			25881	9581	14725	14726	32425	32425					0.10032346205321119
LPTLQVTIFVC	11	Unmodified	_LPTLQVTIFVC_					0	0	0			REV__ENST00000336451.7_1_6:151757569-151765660:-|nuORF	REV__ENST00000336451.7_1_6:151757569-151765660:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.90234375	3	411.901904	1232.68388	0.10649	4.3863E-05	-0.3868	-0.00015932	-0.28031	-0.00011546	411.9022791510888	105.73	0.78893	105.73	105.41	106.2	0.0031738					216	113	3	0	0	0	0.46842	1	28049	28049		2.2527	0	1	580630	+		25882	20073	14726	14727	32426	32426					0.07684658016387402
LPTMLLPFL	9	Unmodified	_LPTMLLPFL_					0	0	0			REV__ENST00000581424.1_1_17:61228485-61228857:+|nuORF	REV__ENST00000581424.1_1_17:61228485-61228857:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.811767578125	2	522.811739	1043.60893	0.65834	0.00034419	0.42585	0.00022264	1.0842	0.00056682	522.8114964029954	86.243	1.2347	86.243	85.791	87.025	0					144	47	4	0	0	0	0.25417	1	22800	22800		8.5933	8.5933	1	1924700	+		25883	22488	14727	14728	32427	32427					0.08886520275837029
LPTMLLPFL	9	Unmodified	_LPTMLLPFL_					0	0	0			REV__ENST00000581424.1_1_17:61228485-61228857:+|nuORF	REV__ENST00000581424.1_1_17:61228485-61228857:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8119506835938	2	522.811739	1043.60893	0.52243	0.00027313	0.16561	8.6585E-05	0.68804	0.00035972	522.8116124860893	86.147	1.1727	86.231	85.863	87.036	0.084251					107	46	4	0	0	0	0.29662	1	22815	22815		9.3474	9.3474	1	2057500	+		25884	22488	14727	14728	32428	32428					0.08886520275837029
LPTMLLPFL	9	Unmodified	_LPTMLLPFL_					0	0	0			REV__ENST00000581424.1_1_17:61228485-61228857:+|nuORF	REV__ENST00000581424.1_1_17:61228485-61228857:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8118896484375	2	522.811739	1043.60893	0.61325	0.00032061	-0.043869	-2.2935E-05	0.56938	0.00029768	522.8115432472217	86.166	1.1709	86.157	85.791	86.962	-0.0090027					113	45	4	0	0	0	0.22883	1	22799	22799		19.439	19.439	1	1821100	+		25885	22488	14727	14728	32429	32429					0.08886520275837029
LPTMLLPFL	9	Unmodified	_LPTMLLPFL_					0	0	0			REV__ENST00000581424.1_1_17:61228485-61228857:+|nuORF	REV__ENST00000581424.1_1_17:61228485-61228857:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	522.811739	1043.60893	0.52243	0.00027313	0.16561	8.6585E-05	0.68804	0.00035972	522.8116124860893	86.147	1.1727	86.231	85.863	87.036	0.084251	0.020672	9.8756E-05	NaN	19.439	107	46	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2057500	+		25886	22488	14727	14728							0.08886520275837029
LPTMLWTRLFF	11	Unmodified	_LPTMLWTRLFF_					0	0	0			REV__ENSG00000180423|ENST00000326737|HARBI1	REV__ENSG00000180423|ENST00000326737|HARBI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.73626708984375	3	475.596814	1423.76861	0.62552	0.0002975	0.82739	0.00039351	1.4529	0.000691	475.5971737804526	55.817	0.33849	55.817	55.682	56.021	0					18	11	2	0	0	0	0.33303	1	13409	13409		0.36667	0	1	246820	+		25887	18109	14728	14729	32430	32430					0.07368028552969008
LPTPDLTL	8	Unmodified	_LPTPDLTL_					0	0	0		ENSG00000138439|ENST00000392238|FAM117B	ENSG00000138439|ENST00000392238|FAM117B	ENSG00000138439|ENST00000392238|FAM117B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.25201416015625	2	435.252569	868.490584	-0.048162	-2.0963E-05	-0.87145	-0.0003793	-0.91961	-0.00040026	435.2523286795179	70.789	2.4815	70.789	70.157	72.639	0					288	89	5	0	0	0	0.073545	1	18175	18175		67.035	0	1	9684400			25888	4151	14729	14730	32431	32431					0.05107864291653641
LPTPDLTL	8	Unmodified	_LPTPDLTL_					0	0	0		ENSG00000138439|ENST00000392238|FAM117B	ENSG00000138439|ENST00000392238|FAM117B	ENSG00000138439|ENST00000392238|FAM117B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.7504577636719	2	435.252569	868.490584	0.0085562	3.7241E-06	-0.95196	-0.00041434	-0.94341	-0.00041062	435.2523014522076	70.842	4.4328	70.902	68.229	72.662	0.060783					310	160	3	0	0	0	0.12267	2	17843	17843;18203		56.541	0	1	9492100			25889	4151	14729	14730	32432;32433	32432					0.05107864291653641
LPTPDYQL	8	Unmodified	_LPTPDYQL_					0	0	0			REV__ENSG00000151388|ENST00000504830|ADAMTS12	REV__ENSG00000151388|ENST00000504830|ADAMTS12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.74755859375	2	473.74765	945.480748	0.21405	0.00010141	-0.42233	-0.00020008	-0.20828	-9.8671E-05	473.7473643354379	79.408	0.70954	79.408	79.142	79.851	0					47	27	2	0	0	0	0.42077	1	20662	20662		15.847	15.847	1	403740	+		25890	16538	14730	14731	32434	32434					0.0058267628628527746
LPTPDYQL	8	Unmodified	_LPTPDYQL_					0	0	0			REV__ENSG00000151388|ENST00000504830|ADAMTS12	REV__ENSG00000151388|ENST00000504830|ADAMTS12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7474060058594	2	473.74765	945.480748	0.38486	0.00018233	-0.64429	-0.00030523	-0.25943	-0.0001229	473.7472379129653	79.429	0.81893	79.4	79.128	79.947	-0.028931					68	31	3	0	0	0	0.42077	1	20595	20595		15.847	15.847	1	424660	+		25891	16538	14730	14731	32435	32435					0.0058267628628527746
LPTRDLRGQR	10	Unmodified	_LPTRDLRGQR_					0	0	0		ENST00000204005.13_1_19:41112319-41113358:+|nuORF	ENST00000204005.13_1_19:41112319-41113358:+|nuORF	ENST00000204005.13_1_19:41112319-41113358:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5704345703125	3	404.570427	1210.68945	0.14214	5.7505E-05	-0.39802	-0.00016103	-0.25588	-0.00010352	404.5702234284605	20.785	0.74133	20.675	20.35	21.091	-0.11003					45	25	2	0	0	0	0.38773	1	2664	2664		3.0723	0	1	301090			25892	8799	14731	14732	32436	32436					0.09253517643082887
LPTRESSKPLI	11	Unmodified	_LPTRESSKPLI_					0	0	0			REV__ENSG00000117400|ENST00000372470|MPL	REV__ENSG00000117400|ENST00000372470|MPL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.5709533691406	3	414.246839	1239.71869	0.25611	0.00010609	1.1278	0.00046719	1.3839	0.00057328	414.2475935310099	32.081	2.8661	32.122	31.772	34.638	0.040993					204	102	4	0	0	0	0.32813	1	6467	6467		5.4027	1.2132	1	2687600	+		25893	14966	14732	14733	32437	32437					0.1084161714873062
LPTRHLKF	8	Unmodified	_LPTRHLKF_					0	0	0		nc|ENSG855|P10266|ERVK-10_pol	nc|ENSG855|P10266|ERVK-10_pol	nc|ENSG855|P10266|ERVK-10_pol	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7636413574219	2	506.308544	1010.60253	0.43077	0.0002181	3.9172	0.0019833	4.3479	0.0022014	506.8104034299988	66.53	0.090172	66.53	66.482	66.573	0					4	2	2	0	0	0	0.34185	1	16668	16668		10.183	0	1	40094			25894	13022	14733	14734	32438	32438					0.09765763159327889
LPTRLPEI	8	Unmodified	_LPTRLPEI_					0	0	0		ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7872009277344	2	469.78711	937.559667	0.31008	0.00014567	-0.10244	-4.8124E-05	0.20764	9.7548E-05	469.7869843668921	54.167	1.3479	54.167	53.516	54.864	0					123	49	4	0	0	0	0.034373	4	12842	12787;12842;12893;12950		85.642	23.492	1	2999800			25895	2404	14734	14735	32439;32440;32441;32442	32440					0.08838948311222339
LPTRLPEI	8	Unmodified	_LPTRLPEI_					0	0	0		ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7872314453125	2	469.78711	937.559667	0.23045	0.00010826	0.035705	1.6774E-05	0.26615	0.00012504	469.7870337696097	54.103	1.2889	54.166	53.516	54.805	0.063202					133	48	4	0	0	0	0.026963	4	12825	12772;12825;12872;12923		92.653	24.284	1	2896500			25896	2404	14734	14735	32443;32444;32445;32446	32444					0.08838948311222339
LPTRLPEI	8	Unmodified	_LPTRLPEI_					0	0	0		ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7870178222656	2	469.78711	937.559667	0.38637	0.00018151	-0.19801	-9.3022E-05	0.18836	8.8489E-05	469.7869373095058	54.262	1.3745	54.246	53.421	54.796	-0.015923					129	49	4	0	0	0	0.034373	4	12895	12742;12845;12895;12955		85.642	17.561	1	2952000			25897	2404	14734	14735	32447;32448;32449;32450	32449					0.08838948311222339
LPTRQEIR	8	Unmodified	_LPTRQEIR_					0	0	0		ENST00000466199.1_1_7:2406190-2411546:+|nuORF;ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	ENST00000466199.1_1_7:2406190-2411546:+|nuORF	ENST00000466199.1_1_7:2406190-2411546:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.33160400390625	2	506.79854	1011.58253	-0.070942	-3.5953E-05	-0.7925	-0.00040164	-0.86345	-0.00043759	506.7979689542049	27.68	0.36777	27.668	27.469	27.837	-0.011562					21	12	2	0	0	0	0.3366	1	4702	4702		18.135	0	1	192140			25898	2065	14735	14736	32451	32451					0.07719967428704422
LPTSLLTI	8	Unmodified	_LPTSLLTI_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.27056884765625	2	429.270761	856.52697	0.039366	1.6899E-05	-0.18096	-7.768E-05	-0.14159	-6.0781E-05	429.27057670845915	76.937	1.0767	76.937	76.643	77.719	0					77	39	3	0	0	0	0.042326	1	19858	19858		81.864	3.4193	1	1072800			25899	3918	14736	14737	32452	32452					0.09296741188370561
LPTSLLTI	8	Unmodified	_LPTSLLTI_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.2706298828125	2	429.270761	856.52697	-0.066979	-2.8752E-05	-0.12166	-5.2227E-05	-0.18864	-8.0979E-05	429.2706188826591	76.854	1.0677	76.907	76.641	77.708	0.053642					77	37	4	0	0	0	0.026049	1	19840	19840		93.883	15.439	1	1172700			25900	3918	14736	14737	32453	32453					0.09296741188370561
LPTSLLTI	8	Unmodified	_LPTSLLTI_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.27056884765625	2	429.270761	856.52697	0.21928	9.4132E-05	-0.38801	-0.00016656	-0.16873	-7.2431E-05	429.2704927157856	76.952	0.91891	76.921	76.654	77.573	-0.031334					70	33	4	0	0	0	0.033363	1	19821	19821		86.121	7.6766	1	1077900			25901	3918	14736	14737	32454	32454					0.09296741188370561
LPTSVQVTI	9	Unmodified	_LPTSVQVTI_					0	0	0		ENSG00000186532|ENST00000305513|SMYD4;ENST00000573937.5_1_17:1707859-1733034:-|nuORF;SMYD4|p.E257Afs*52|1|0.08|ENSG00000186532|chr17:1800620-1800624|GAGCT/-|frameshift_variant	ENSG00000186532|ENST00000305513|SMYD4	ENSG00000186532|ENST00000305513|SMYD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2844543457031	2	479.2844	956.554247	0.20072	9.6203E-05	0.37662	0.00018051	0.57734	0.00027671	479.28445594208125	62.824	0.53758	62.824	62.58	63.117	0					47	19	3	0	0	0	0.064268	2	15526	15526;15546		47.594	11.088	1	839760			25902	7626	14737	14738	32455;32456	32455					0.07423224728779587
LPTSVQVTI	9	Unmodified	_LPTSVQVTI_					0	0	0		ENSG00000186532|ENST00000305513|SMYD4;ENST00000573937.5_1_17:1707859-1733034:-|nuORF;SMYD4|p.E257Afs*52|1|0.08|ENSG00000186532|chr17:1800620-1800624|GAGCT/-|frameshift_variant	ENSG00000186532|ENST00000305513|SMYD4	ENSG00000186532|ENST00000305513|SMYD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2840576171875	2	479.2844	956.554247	0.31476	0.00015086	0.13766	6.5978E-05	0.45241	0.00021683	479.2843757828972	62.757	0.68387	62.852	62.544	63.228	0.095722					52	24	3	0	0	0	0.069366	2	15479	15479;15508		45.7	4.2007	1	775300			25903	7626	14737	14738	32457;32458	32457					0.07423224728779587
LPTSVQVTI	9	Unmodified	_LPTSVQVTI_					0	0	0		ENSG00000186532|ENST00000305513|SMYD4;ENST00000573937.5_1_17:1707859-1733034:-|nuORF;SMYD4|p.E257Afs*52|1|0.08|ENSG00000186532|chr17:1800620-1800624|GAGCT/-|frameshift_variant	ENSG00000186532|ENST00000305513|SMYD4	ENSG00000186532|ENST00000305513|SMYD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2842102050781	2	479.2844	956.554247	0.22025	0.00010556	0.072198	3.4603E-05	0.29245	0.00014017	479.2843337578549	62.825	0.64713	62.816	62.57	63.217	-0.0085564					53	23	4	0	0	0	0.069366	1	15509	15509		45.7	3.86	1	802750			25904	7626	14737	14738	32459	32459					0.07423224728779587
LPTTALPTV	9	Unmodified	_LPTTALPTV_					0	0	0		ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP	ENSG00000175727|ENST00000319080|MLXIP	ENSG00000175727|ENST00000319080|MLXIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.29510498046875	2	456.773668	911.532783	-0.08254	-3.7702E-05	1.2955	0.00059176	1.213	0.00055405	456.77387655717126	61.92	0.60554	61.912	61.613	62.219	-0.0085526					38	21	2	0	0	0	0.10111	1	15221	15221		34.102	0	1	578600			25905	6879	14738	14739	32460	32460					0.07347839700037184
LPTTQFHK	8	Unmodified	_LPTTQFHK_					0	0	0		ENST00000467638.1_1_7:139757417-139762332:-|nuORF	ENST00000467638.1_1_7:139757417-139762332:-|nuORF	ENST00000467638.1_1_7:139757417-139762332:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7850036621094	2	486.269084	970.523616	-0.0058538	-2.8465E-06	-3.1192	-0.0015168	-3.1251	-0.0015196	486.267334434197	14.781	0.34054	14.674	14.452	14.793	-0.10637					17	11	2	0	0	0	0.32038	1	832	832		28.487	5.3384	1	59597			25906	10827	14739	14740	32461	32461					0.037174911343640815
LPTTQFHK	8	Unmodified	_LPTTQFHK_					0	0	0		ENST00000467638.1_1_7:139757417-139762332:-|nuORF	ENST00000467638.1_1_7:139757417-139762332:-|nuORF	ENST00000467638.1_1_7:139757417-139762332:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	486.269084	970.523616	-0.052413	-2.5487E-05	-4.289	-0.0020856	-4.3414	-0.0021111	486.26683217032945	14.651	0.33378	14.651	14.395	14.729	0	-0.011492	-0.0003367	NaN	28.487	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56621			25907	10827	14739	14740							0.037174911343640815
LPTTVSAK	8	Unmodified	_LPTTVSAK_					0	0	0		ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	ENSG00000137975|ENST00000370565|CLCA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.75274658203125	2	408.744911	815.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.528	1	63.519	63.019	64.019	-0.0085526								0	0	0	0.33122	1	15727	15727		23.148	0	1				25908	4101	14740	14741	32462	32462					0.060149974944692985
LPTVHSII	8	Unmodified	_LPTVHSII_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.2684326171875	2	440.268553	878.522553	0.078967	3.4767E-05	0.1284	5.6532E-05	0.20737	9.1299E-05	440.2685025796471	52.093	1.3127	52.093	51.43	52.743	0					90	47	3	0	0	0	0.0030373	3	12240	12144;12190;12240		131.3	16.354	1	2596100			25909	7428	14741	14742	32463;32464;32465	32465					0.07843276765481733
LPTVHSII	8	Unmodified	_LPTVHSII_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2685546875	2	440.268553	878.522553	0.11993	5.28E-05	0.034884	1.5358E-05	0.15481	6.8158E-05	440.26847272067477	52.052	1.1417	52.103	51.599	52.74	0.050575					86	41	3	0	0	0	0.010069	3	12141	12141;12185;12236		117.6	16.137	1	3058600			25910	7428	14741	14742	32466;32467;32468	32466					0.07843276765481733
LPTVHSII	8	Unmodified	_LPTVHSII_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.2685241699219	2	440.268553	878.522553	-0.056333	-2.4801E-05	0.26815	0.00011806	0.21182	9.3256E-05	440.2685610782564	52.147	1.0873	52.146	51.523	52.61	-0.00080872					88	39	3	0	0	0	0.00085426	3	12216	12173;12216;12270		146.01	16.807	1	2973200			25911	7428	14741	14742	32469;32470;32471	32470					0.07843276765481733
LPTWTIQYVL	10	Unmodified	_LPTWTIQYVL_					0	0	0			REV__ENSG00000101203|ENST00000358894|COL20A1	REV__ENSG00000101203|ENST00000358894|COL20A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.9023742675781	3	411.90078	1232.68051	-0.026725	-1.1008E-05	1.3381	0.00055118	1.3114	0.00054018	411.90231183761216	105.75	0.75035	105.75	105.31	106.06	-0.0027771					160	107	2	0	0	0	0.40106	1	28000	28000		1.5923	0.26264	1	590560	+		25912	14256	14742	14743	32472	32472					0.07347731234040111
LPTWTIQYVL	10	Unmodified	_LPTWTIQYVL_					0	0	0			REV__ENSG00000101203|ENST00000358894|COL20A1	REV__ENSG00000101203|ENST00000358894|COL20A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.90078	1232.68051	-0.026725	-1.1008E-05	1.3381	0.00055118	1.3114	0.00054018	411.90231183761216	105.75	0.75035	105.75	105.31	106.06	-0.0027771	0.011683	-0.0010609	NaN	1.5923	160	107	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	590560	+		25913	14256	14742	14743							0.07347731234040111
LPTWTIQYVL	10	Unmodified	_LPTWTIQYVL_					0	0	0			REV__ENSG00000101203|ENST00000358894|COL20A1	REV__ENSG00000101203|ENST00000358894|COL20A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	411.90078	1232.68051	0.10649	4.3863E-05	2.3411	0.00096428	2.4475	0.0010081	411.9022791510888	105.73	0.78893	105.73	105.41	106.2	0.0031738	-0.011683	0.00017839	NaN	1.5923	216	113	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	580630	+		25914	14256	14742	14743							0.07347731234040111
LPTYWPWL	8	Unmodified	_LPTYWPWL_					0	0	0		ENSG00000135116|ENST00000257572|HRK	ENSG00000135116|ENST00000257572|HRK	ENSG00000135116|ENST00000257572|HRK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2946166992188	2	538.284203	1074.55385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.825	1	99.864	99.364	100.36	0.038994								0	0	0	0.35014	1	26690	26690		14.582	0	1				25915	3846	14743	14744	32473	32473					0.01955849799560383
LPVAPLCPLL	10	Unmodified	_LPVAPLCPLL_					0	0	0			REV__ENST00000533662.1_1_8:145582625-145582733:+|nuORF	REV__ENST00000533662.1_1_8:145582625-145582733:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3171997070312	2	518.317189	1034.61982	0.48043	0.00024901	-0.28166	-0.00014599	0.19876	0.00010302	518.3169614341426	74.243	2.8627	74.243	72.506	75.369	0					186	101	2	0	0	0	0.39536	1	19185	19185		4.3292	0	1	2040100	+		25916	22036	14744	14745	32474	32474					0.10389922650097105
LPVARPQL	8	Unmodified	_LPVARPQL_					0	0	0		ENST00000340634.4_1_3:142681054-142682041:-|nuORF	ENST00000340634.4_1_3:142681054-142682041:-|nuORF	ENST00000340634.4_1_3:142681054-142682041:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.2820129394531	2	447.281995	892.549437	0.34327	0.00015354	-0.35882	-0.00016049	-0.015545	-6.9528E-06	447.2817743440436	38.526	2.2754	38.624	37.953	40.228	0.097527					150	81	3	0	0	0	0.17761	1	8141	8141		46.921	0	1	706590			25917	9517	14745	14746	32475	32475					0.098863853766602
LPVATEPL	8	Unmodified	_LPVATEPL_					0	0	0		ENST00000534483.1_1_11:327505-327649:+|nuORF	ENST00000534483.1_1_11:327505-327649:+|nuORF	ENST00000534483.1_1_11:327505-327649:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.2470397949219	2	420.247286	838.48002	0.13305	5.5915E-05	-0.15899	-6.6815E-05	-0.025937	-1.09E-05	420.24702723615275	63.05	0.68624	63.146	62.825	63.511	0.095722					50	24	3	0	0	0	0.33916	1	15611	15611		26.341	0	1	466170			25918	11660	14746	14747	32476	32476					0.054318816372301626
LPVAVKHVV	9	Unmodified	_LPVAVKHVV_					0	0	0		PIM3|p.D237Rfs*61|1|0.28|ENSG00000198355|chr22:49962779-49962780|-/C|frameshift_variant;ENSG00000198355|ENST00000360612|PIM3	PIM3|p.D237Rfs*61|1|0.28|ENSG00000198355|chr22:49962779-49962780|-/C|frameshift_variant	PIM3|p.D237Rfs*61|1|0.28|ENSG00000198355|chr22:49962779-49962780|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.76934814453125	2	481.313295	960.612037	0.56209	0.00027054	0.31478	0.00015151	0.87687	0.00042205	481.313364388697	33.858	0.32323	33.858	33.7	34.023	0					18	11	2	0	0	0	0.25202	1	6636	6636		10.824	2.2306	1	120150			25919	8063	14747	14748	32477	32477					0.13015531444852968
LPVAVKHVV	9	Unmodified	_LPVAVKHVV_					0	0	0		PIM3|p.D237Rfs*61|1|0.28|ENSG00000198355|chr22:49962779-49962780|-/C|frameshift_variant;ENSG00000198355|ENST00000360612|PIM3	PIM3|p.D237Rfs*61|1|0.28|ENSG00000198355|chr22:49962779-49962780|-/C|frameshift_variant	PIM3|p.D237Rfs*61|1|0.28|ENSG00000198355|chr22:49962779-49962780|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7693786621094	2	481.313295	960.612037	0.83595	0.00040235	0.03544	1.7058E-05	0.87139	0.00041941	481.31320374326816	33.743	0.41577	33.809	33.65	34.066	0.066357					23	14	2	0	0	0	0.25202	1	6597	6597		10.824	3.5347	1	148270			25920	8063	14747	14748	32478	32478					0.13015531444852968
LPVAVKHVV	9	Unmodified	_LPVAVKHVV_					0	0	0		PIM3|p.D237Rfs*61|1|0.28|ENSG00000198355|chr22:49962779-49962780|-/C|frameshift_variant;ENSG00000198355|ENST00000360612|PIM3	PIM3|p.D237Rfs*61|1|0.28|ENSG00000198355|chr22:49962779-49962780|-/C|frameshift_variant	PIM3|p.D237Rfs*61|1|0.28|ENSG00000198355|chr22:49962779-49962780|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7692565917969	2	481.313295	960.612037	0.12139	5.8426E-05	0.64123	0.00030863	0.76262	0.00036706	481.3136656759998	33.751	0.41727	33.818	33.577	33.995	0.066704					20	14	2	0	0	0	0.25202	1	6585	6585		10.824	6.8795	1	128980			25921	8063	14747	14748	32479	32479					0.13015531444852968
LPVAVKLTV	9	Unmodified	_LPVAVKLTV_					0	0	0			REV__FCRL5|p.V749L|1|0.16|ENSG00000143297|chr1:157521287-157521287|C/A|missense_variant	REV__FCRL5|p.V749L|1|0.16|ENSG00000143297|chr1:157521287-157521287|C/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.3155517578125	2	470.315503	938.616454	0.105	4.9381E-05	0.092905	4.3695E-05	0.1979	9.3076E-05	470.31540801950587	57.606	0.91311	57.606	57.246	58.159	0					57	32	2	0	0	0	0.047483	1	13890	13890		53.833	0	1	1190600	+		25922	22684	14748	14749	32480	32480					0.14468995867741796
LPVAVKLTV	9	Unmodified	_LPVAVKLTV_					0	0	0			REV__FCRL5|p.V749L|1|0.16|ENSG00000143297|chr1:157521287-157521287|C/A|missense_variant	REV__FCRL5|p.V749L|1|0.16|ENSG00000143297|chr1:157521287-157521287|C/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.3154296875	2	470.315503	938.616454	0.16367	7.6975E-05	-0.010706	-5.0352E-06	0.15296	7.194E-05	470.31542253712274	57.47	0.89819	57.556	57.24	58.138	0.085621					65	32	3	0	0	0	0.079752	1	13899	13899		41.84	3.6641	1	1167300	+		25923	22684	14748	14749	32481	32481					0.14468995867741796
LPVAVKLTV	9	Unmodified	_LPVAVKLTV_					0	0	0			REV__FCRL5|p.V749L|1|0.16|ENSG00000143297|chr1:157521287-157521287|C/A|missense_variant	REV__FCRL5|p.V749L|1|0.16|ENSG00000143297|chr1:157521287-157521287|C/A|missense_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	470.315503	938.616454	0.105	4.9381E-05	0.092905	4.3695E-05	0.1979	9.3076E-05	470.31540801950587	57.606	0.91311	57.606	57.246	58.159	0	0.033113	2.057E-05	NaN	53.833	57	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1190600	+		25924	22684	14748	14749							0.14468995867741796
LPVAVKLTV	9	Unmodified	_LPVAVKLTV_					0	0	0			REV__FCRL5|p.V749L|1|0.16|ENSG00000143297|chr1:157521287-157521287|C/A|missense_variant	REV__FCRL5|p.V749L|1|0.16|ENSG00000143297|chr1:157521287-157521287|C/A|missense_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	470.315503	938.616454	0.16367	7.6975E-05	-0.010706	-5.0352E-06	0.15296	7.194E-05	470.31542253712274	57.47	0.89819	57.556	57.24	58.138	0.085621	-0.016765	-7.689E-05	NaN	53.833	65	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1167300	+		25925	22684	14748	14749							0.14468995867741796
LPVDAVISV	9	Unmodified	_LPVDAVISV_					0	0	0		ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7738037109375	2	456.773668	911.532783	0.055845	2.5509E-05	-1.7773	-0.00081184	-1.7215	-0.00078633	456.77367455075574	69.889	0.86655	69.955	69.518	70.384	0.066048					91	30	4	0	0	0	0.14076	1	17736	17736		32.305	5.4218	1	607980			25926	2271	14749	14750	32482	32482					0.07347839700059922
LPVDAVISV	9	Unmodified	_LPVDAVISV_					0	0	0		ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.77386474609375	2	456.773668	911.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.139	1	70.117	69.617	70.617	-0.022087								0	0	0	0.16039	1	17747	17747		32.305	1.6689	1				25927	2271	14749	14750	32483	32483					0.07347839700059922
LPVDLNVVLN	10	Unmodified	_LPVDLNVVLN_					0	0	0			REV__ENSG00000064703|ENST00000369702|DDX20	REV__ENSG00000064703|ENST00000369702|DDX20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.8035278320312	2	548.324057	1094.63356	0.41126	0.00022551	-0.435	-0.00023852	-0.023739	-1.3017E-05	548.3242736143111	30.688	0.36006	30.688	30.587	30.948	0					15	12	2	0	0	0	0.318	1	5649	5649		7.2892	0.56607	1	79851	+		25928	13648	14750	14751	32484	32484					0.09002871682901059
LPVDMETI	8	Oxidation (M)	_LPVDM(Oxidation (M))ETI_		LPVDM(1)ETI		LPVDM(47)ETI	0	0	1		nc|ENSG00000115685|Q15435-2|PPP1R7;ENSG00000115685|ENST00000234038|PPP1R7;ENST00000493374.5_1_2:242089910-242097991:+|nuORF;ENST00000498170.5_1_2:242089910-242097991:+|nuORF;nc|ENSG00000115685|Q15435-5|PPP1R7;nc|ENSG00000115685|Q15435-4|PPP1R7;nc|ENSG00000115685|Q15435-3|PPP1R7	nc|ENSG00000115685|Q15435-2|PPP1R7	nc|ENSG00000115685|Q15435-2|PPP1R7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2336120605469	2	467.233519	932.452484	0.049799	2.3268E-05	-0.81447	-0.00038055	-0.76467	-0.00035728	467.2329323363877	49.732	0.62252	49.732	49.516	50.138	0					33	22	2	0	0	0	0.17761	1	11473	11473		46.921	26.05	1	372700			25929	2670	14751	14752	32485	32485		332			-0.016443896852933904
LPVEAMVTI	9	Oxidation (M)	_LPVEAM(Oxidation (M))VTI_		LPVEAM(1)VTI		LPVEAM(120)VTI	0	0	1		nc|ENSG00000124535|Q96S55-3|WRNIP1;nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1	nc|ENSG00000124535|Q96S55-3|WRNIP1	nc|ENSG00000124535|Q96S55-3|WRNIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.77288818359375	2	494.772811	987.531069	0.48326	0.00023911	-0.47859	-0.00023679	0.0046745	2.3128E-06	494.7725364324955	62.551	1.1734	62.551	62.051	63.225	0					106	43	4	0	0	0	0.0011817	3	15409	15409;15453;15520		120.45	69.595	1	5060200			25930	3162	14752	14753	32486;32487;32488	32486		392			0.036804626197977086
LPVEAMVTI	9	Oxidation (M)	_LPVEAM(Oxidation (M))VTI_		LPVEAM(1)VTI		LPVEAM(120)VTI	0	0	1		nc|ENSG00000124535|Q96S55-3|WRNIP1;nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1	nc|ENSG00000124535|Q96S55-3|WRNIP1	nc|ENSG00000124535|Q96S55-3|WRNIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.77294921875	2	494.772811	987.531069	0.48722	0.00024106	-0.28186	-0.00013946	0.20536	0.00010161	494.77258209510313	62.453	1.3081	62.55	62.058	63.366	0.096985					118	47	4	0	0	0	0.0011817	3	15377	15377;15424;15487		120.45	69.595	1	4843400			25931	3162	14752	14753	32489;32490;32491	32489		392			0.036804626197977086
LPVEAMVTI	9	Oxidation (M)	_LPVEAM(Oxidation (M))VTI_		LPVEAM(1)VTI		LPVEAM(120)VTI	0	0	1		nc|ENSG00000124535|Q96S55-3|WRNIP1;nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1	nc|ENSG00000124535|Q96S55-3|WRNIP1	nc|ENSG00000124535|Q96S55-3|WRNIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.772705078125	2	494.772811	987.531069	0.40869	0.00020221	-0.34726	-0.00017181	0.061426	3.0392E-05	494.77259838608364	62.508	1.3962	62.499	61.955	63.351	-0.0085526					125	51	4	0	0	0	0.0015545	3	15424	15377;15424;15477		115.69	60.918	1	4649800			25932	3162	14752	14753	32492;32493;32494	32493		392			0.036804626197977086
LPVEPIKPF	9	Unmodified	_LPVEPIKPF_					0	0	0			REV__EME1|p.S519Ffs*3|1|0.36|ENSG00000154920|chr17:50380776-50380777|-/T|frameshift_variant	REV__EME1|p.S519Ffs*3|1|0.36|ENSG00000154920|chr17:50380776-50380777|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3472900390625	2	520.312961	1038.61137	0.47484	0.00024706	-0.64843	-0.00033738	-0.17359	-9.0319E-05	520.3125421767157	71.592	0.51127	71.592	71.262	71.773	0					29	17	2	0	0	0	0.21905	1	18244	18244		23.148	0.41214	1	458540	+		25933	13310	14753	14754	32495	32495					0.09360692005134297
LPVEQRNEI	9	Unmodified	_LPVEQRNEI_					0	0	0		ENSG00000140718|ENST00000471389|FTO;nc|ENSG00000140718|Q9C0B1-4|FTO;nc|ENSG00000140718|Q9C0B1-2|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3015747070312	2	549.301113	1096.58767	-0.42937	-0.00023585	1.1174	0.00061378	0.68802	0.00037793	549.301550341142	34.514	0.70346	34.514	34.164	34.868	0					62	24	3	0	0	0	0.12279	1	6776	6776		34.932	7.8437	1	807680			25934	4331	14754	14755	32496	32496					0.04324226500648365
LPVESKRY	8	Unmodified	_LPVESKRY_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7499694824219	2	496.282192	990.549831	0.50425	0.00025025	1.9857	0.00098549	2.49	0.0012357	496.28312944483184	82.704	0.50616	82.777	82.546	83.052	0.073097					30	19	2	0	0	0	0.32886	1	21643	21643		21.747	1.293	1	133360			25935	2585	14755	14756	32497	32497					0.05417760305851971
LPVESKRY	8	Unmodified	_LPVESKRY_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7501525878906	2	496.282192	990.549831	0.50163	0.00024895	1.5992	0.00079366	2.1008	0.0010426	496.28298187096414	82.853	0.4311	82.832	82.596	83.027	-0.020584					25	16	2	0	0	0	0.32886	1	21679	21679		15.847	1.0089	1	133070			25936	2585	14755	14756	32498	32498					0.05417760305851971
LPVFVEGVDT	10	Unmodified	_LPVFVEGVDT_					0	0	0			REV__ENSG00000150961|ENST00000280551|SEC24D	REV__ENSG00000150961|ENST00000280551|SEC24D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8001708984375	2	538.28714	1074.55973	0.39558	0.00021294	0.023364	1.2576E-05	0.41894	0.00022551	538.2873891223173	16.169	0.52141	16.107	15.892	16.414	-0.062534					28	17	3	0	0	0	0.39935	1	1245	1245		3.5965	0	1	90780	+		25937	16517	14756	14757	32499	32499					0.02542903520566142
LPVFVFQILVS	11	Unmodified	_LPVFVFQILVS_					0	0	0		MER72B_dup8|chr1:206066627-206067269:-|1.6590386670019752|0.1593671915957709|3.38|525.0|29|1|anti-sense	MER72B_dup8|chr1:206066627-206067269:-|1.6590386670019752|0.1593671915957709|3.38|525.0|29|1|anti-sense	MER72B_dup8|chr1:206066627-206067269:-|1.6590386670019752|0.1593671915957709|3.38|525.0|29|1|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2665100097656	3	421.256675	1260.7482	-0.20997	-8.8452E-05	-0.39348	-0.00016576	-0.60345	-0.00025421	421.25658982899665	16.109	0.89629	16.109	15.763	16.659	0					105	31	5	0	0	0	0.43831	1	1313	1313		2.8433	1.6285	1	1145300			25938	12538	14757	14758	32500	32500					0.12825181164839705
LPVGRTVTI	9	Unmodified	_LPVGRTVTI_					0	0	0		nc|ENSG00000006757|P41247-2|PNPLA4;ENSG00000006757|ENST00000381042|PNPLA4	nc|ENSG00000006757|P41247-2|PNPLA4	nc|ENSG00000006757|P41247-2|PNPLA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.81060791015625	2	478.300384	954.586216	0.43959	0.00021026	0.20034	9.5825E-05	0.63993	0.00030608	478.300529957382	44.789	0.40887	44.789	44.552	44.961	0					25	14	2	0	0	0	0.14786	1	9937	9937		31.268	0.6318	1	343040			25939	370	14758	14759	32501	32501					0.10710637202578255
LPVHEDTQF	9	Unmodified	_LPVHEDTQF_					0	0	0		nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF	nc|ENSG00000144406|Q8N2C7-7|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8094482421875	2	543.266739	1084.51892	0.72059	0.00039147	-3.6546	-0.0019854	-2.934	-0.0015939	543.2640769444344	45.034	0.19332	45.109	45.016	45.209	0.075047					9	6	2	0	0	0	0.23783	1	10019	10019		12.532	2.4576	1	70486			25940	4582	14759	14760	32502	32502					-0.01995437799064348
LPVHFTTLV	9	Unmodified	_LPVHFTTLV_					0	0	0			REV__ENST00000483508.5_1_1:109910028-109912178:-|nuORF	REV__ENST00000483508.5_1_1:109910028-109912178:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.813232421875	2	513.80276	1025.59097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.228	1	50.273	49.773	50.773	0.044891								0	0	0	0.19325	1	11632	11632		24.674	6.5275	1		+		25941	15660	14760	14761	32503	32503					0.07919521345297653
LPVHGGRTQ	9	Unmodified	_LPVHGGRTQ_					0	0	0		ENST00000426508.6_2_16:1630838-1636182:-|nuORF	ENST00000426508.6_2_16:1630838-1636182:-|nuORF	ENST00000426508.6_2_16:1630838-1636182:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.78228759765625	2	482.769783	963.525013	0.1887	9.1096E-05	-0.2678	-0.00012929	-0.079105	-3.819E-05	482.76763792123677	26.887	0.11349	26.865	26.813	26.926	-0.021412					5	3	2	0	0	0	0.30623	1	4503	4503		7.9102	0	1	13795			25942	10419	14761	14762	32504	32504					0.041791252231291764
LPVHPVSL	8	Unmodified	_LPVHPVSL_					0	0	0		ENST00000064780.6_1_11:73107380-73107611:+|nuORF	ENST00000064780.6_1_11:73107380-73107611:+|nuORF	ENST00000064780.6_1_11:73107380-73107611:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.88812255859375	2	431.263271	860.511988	-0.077115	-3.3257E-05	-1.3012	-0.00056117	-1.3783	-0.00059442	431.262550536726	30.672	0.45729	30.7	30.496	30.954	0.027946					21	15	2	0	0	0	0.34046	1	5675	5675		14.582	4.3983	1	69174			25943	8776	14762	14763	32505	32505					0.07615294111042203
LPVHYELL	8	Unmodified	_LPVHYELL_					0	0	0		nc|ENSG00000259956|Q8NDT2-2|RBM15B;ENSG00000259956|ENST00000563281|RBM15B	nc|ENSG00000259956|Q8NDT2-2|RBM15B	nc|ENSG00000259956|Q8NDT2-2|RBM15B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.7430114746094	2	492.28166	982.548768	0.4116	0.00020262	-1.4232	-0.00070063	-1.0116	-0.00049801	492.28109295992687	62.277	0.51478	62.374	62.12	62.635	0.096985					34	18	3	0	0	0	0.32778	1	15347	15347		14.582	6.6715	1	182910			25944	8648	14763	14764	32506	32506					0.056795459369595847
LPVIFAKI	8	Unmodified	_LPVIFAKI_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7997741699219	2	450.799489	899.584425	0.36879	0.00016625	-0.091321	-4.1167E-05	0.27747	0.00012508	450.79933147054885	66.284	0.86742	66.284	65.927	66.794	0					69	30	3	0	0	0	0.042326	2	16569	16569;16616		81.864	41.415	1	646010			25945	530	14764	14765	32507;32508	32507					0.13061628184607343
LPVIFAKI	8	Unmodified	_LPVIFAKI_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.79949951171875	2	450.799489	899.584425	0.32571	0.00014683	-0.11334	-5.1094E-05	0.21237	9.5735E-05	450.7993020827857	66.239	1.0447	66.323	65.888	66.933	0.083832					79	37	3	0	0	0	0.042326	2	16515	16515;16561		81.864	41.415	1	825600			25946	530	14764	14765	32509;32510	32509					0.13061628184607343
LPVIFAKI	8	Unmodified	_LPVIFAKI_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7995910644531	2	450.799489	899.584425	0.21488	9.6869E-05	-0.021642	-9.7564E-06	0.19324	8.7113E-05	450.79937659026507	66.351	0.95004	66.338	65.919	66.869	-0.013596					69	34	3	0	0	0	0.042326	2	16596	16550;16596		81.864	38.896	1	764620			25947	530	14764	14765	32511;32512	32512					0.13061628184607343
LPVISVRLPSR	11	Unmodified	_LPVISVRLPSR_					0	0	0		nc|ENSG00000156026|Q8NE86-3|MCU;nc|ENSG00000156026|Q8NE86-2|MCU;ENSG00000156026|ENST00000373053|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.31591796875	2	618.892972	1235.77139	0.1537	9.5121E-05	-0.05907	-3.6558E-05	0.094626	5.8563E-05	618.8929461163036	52.048	0.43719	52.099	51.9	52.337	0.050575					26	15	2	0	0	0	0.33037	1	12177	12177		7.609	4.3276	1	214550			25948	5214	14765	14766	32513	32513					0.16293620002170428
LPVKHPEL	8	Unmodified	_LPVKHPEL_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000581764.1_1_17:61907522-61908306:+|nuORF	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7813415527344	2	466.781828	931.549102	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.339	1	30.367	29.867	30.867	0.027946								0	0	0	0.33478	1	5541	5541		21.537	5.6898	1				25949	1298	14766	14767	32514	32514					0.08058965656789496
LPVLAKSI	8	Unmodified	_LPVLAKSI_					0	0	0			REV__ENST00000584706.1_1_18:678488-685971:-|nuORF	REV__ENST00000584706.1_1_18:678488-685971:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.5832214355469	2	420.781296	839.54804	0.64605	0.00027185	-0.63961	-0.00026914	0.0064355	2.7079E-06	420.78092740600914	47.047	0.74519	47.101	46.877	47.622	0.054371					48	26	3	0	0	0	0.32435	1	10589	10589		16.942	5.302	1	1514700	+		25950	15554	14767	14768	32515	32515					0.1218475128788441
LPVLLIEI	8	Unmodified	_LPVLLIEI_					0	0	0			REV__ENST00000377503.6_1_5:159681329-159707642:-|nuORF	REV__ENST00000377503.6_1_5:159681329-159707642:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.7945861816406	2	455.304604	908.594655	0.39487	0.00017979	-2.5925	-0.0011804	-2.1976	-0.0010006	455.3032941796542	54.239	0.34093	54.302	54.142	54.483	0.063202					16	12	2	0	0	0	0.32778	1	12859	12859		20.871	0	1	120980	+		25951	20505	14768	14769	32516	32516					0.1367019111917216
LPVLPQLF	8	Unmodified	_LPVLPQLF_					0	0	0			REV__ENSG00000181027|ENST00000318584|FKRP	REV__ENSG00000181027|ENST00000318584|FKRP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.8009033203125	2	463.789121	925.56369	0.31164	0.00014453	-3.8276	-0.0017752	-3.516	-0.0016307	463.78763811173	40.229	0.98548	40.328	39.977	40.962	0.099407					56	35	3	0	0	0	0.43727	1	8684	8684		10.183	0.83596	1	343680	+		25952	18130	14769	14770	32517	32517					0.09793037804934102
LPVLPQLF	8	Unmodified	_LPVLPQLF_					0	0	0			REV__ENSG00000181027|ENST00000318584|FKRP	REV__ENSG00000181027|ENST00000318584|FKRP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	463.789121	925.56369	0.16412	7.6119E-05	-4.5318	-0.0021018	-4.3677	-0.0020257	463.78785843392956	40.414	1.0449	40.414	40.024	41.069	0	0.043165	-0.00037207	NaN	10.183	69	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313030	+		25953	18130	14769	14770							0.09793037804934102
LPVNAQNYV	9	Unmodified	_LPVNAQNYV_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7879943847656	2	509.271824	1016.5291	0.22391	0.00011403	0.70163	0.00035732	0.92555	0.00047136	509.27201947644596	53.851	0.3391	53.907	53.689	54.028	0.056259					18	12	2	0	0	0	0.21905	1	12760	12760		23.148	5.0134	1	203490			25954	575	14770	14771	32518	32518					0.021491699261900976
LPVNSGVTRI	10	Unmodified	_LPVNSGVTRI_					0	0	0		GINM1|p.E196Kfs*21|1|0.12|ENSG00000055211|chr6:149579984-149579984|A/-|frameshift_variant;ENSG00000055211|ENST00000367419|GINM1	GINM1|p.E196Kfs*21|1|0.12|ENSG00000055211|chr6:149579984-149579984|A/-|frameshift_variant	GINM1|p.E196Kfs*21|1|0.12|ENSG00000055211|chr6:149579984-149579984|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.813720703125	2	528.314023	1054.61349	0.20687	0.00010929	0.066512	3.5139E-05	0.27339	0.00014443	528.8138983692609	118.74	1.8195	118.72	118.15	119.97	-0.024147					433	229	2	0	0	0	0.40262	1	30798	30798		2.9952	0.69251	1	25102			25955	703	14771	14772	32519	32519					0.08837120742941806
LPVPAFNVI	9	Unmodified	_LPVPAFNVI_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1;ENST00000521659.5_2_17:4855435-4858958:+|nuORF;nc|ENSG00000111674|P09104-2|ENO2;nc|ENSG00000108515|P13929-3|ENO3;ENSG00000111674|ENST00000229277|ENO2;ENSG00000108515|ENST00000519602|ENO3	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.2921142578125	2	485.292028	968.569503	0.41983	0.00020374	-0.47447	-0.00023025	-0.054637	-2.6515E-05	485.29192389125717	82.798	1.1681	82.798	82.513	83.681	0					101	43	4	0	0	0	0.0084096	5	21642	21594;21642;21686;21744;21804		81.864	57.19	1	2990000			25956	1028	14772	14773	32520;32521;32522;32523;32524	32521					0.08396136316616776
LPVPAFNVI	9	Unmodified	_LPVPAFNVI_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1;ENST00000521659.5_2_17:4855435-4858958:+|nuORF;nc|ENSG00000111674|P09104-2|ENO2;nc|ENSG00000108515|P13929-3|ENO3;ENSG00000111674|ENST00000229277|ENO2;ENSG00000108515|ENST00000519602|ENO3	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.2922058105469	2	485.292028	968.569503	0.34583	0.00016783	-0.3405	-0.00016524	0.0053222	2.5828E-06	485.291996847205	82.734	1.2851	82.807	82.494	83.779	0.073097					109	49	4	0	0	0	0.0084096	4	21602	21555;21602;21651;21699		81.864	58.716	1	3070900			25957	1028	14772	14773	32525;32526;32527;32528	32526					0.08396136316616776
LPVPAFNVI	9	Unmodified	_LPVPAFNVI_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1;ENST00000521659.5_2_17:4855435-4858958:+|nuORF;nc|ENSG00000111674|P09104-2|ENO2;nc|ENSG00000108515|P13929-3|ENO3;ENSG00000111674|ENST00000229277|ENO2;ENSG00000108515|ENST00000519602|ENO3	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2921447753906	2	485.292028	968.569503	0.43774	0.00021243	-0.49445	-0.00023995	-0.056712	-2.7522E-05	485.29191184765267	82.86	1.2687	82.839	82.475	83.743	-0.020584					114	51	5	0	0	0	0.0084096	3	21627	21627;21676;21752		81.864	57.19	1	3026800			25958	1028	14772	14773	32529;32530;32531	32529					0.08396136316616776
LPVPAVRI	8	Unmodified	_LPVPAVRI_					0	0	0			REV__ENSG00000115919|ENST00000264170|KYNU	REV__ENSG00000115919|ENST00000264170|KYNU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.78729248046875	2	432.786913	863.559273	0.049358	2.1361E-05	0.45779	0.00019813	0.50715	0.00021949	432.7869623163893	51.177	1.723	51.187	50.757	52.48	0.0095673					138	64	3	0	0	0	0.082568	1	11856	11856		63.563	0	1	2817100	+		25959	14902	14773	14774	32532	32532					0.12203573382032573
LPVPERRRGP	10	Unmodified	_LPVPERRRGP_					0	0	0		ENSG00000114270|ENST00000681320|COL7A1;nc|ENSG00000114270|Q02388-2|COL7A1;ENST00000487017.5_1_3:48609337-48621784:-|nuORF	ENSG00000114270|ENST00000681320|COL7A1	ENSG00000114270|ENST00000681320|COL7A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3427124023438	2	588.851638	1175.68872	0.3417	0.00020121	0.25394	0.00014953	0.59564	0.00035074	588.8510280643255	91.587	0.45925	91.678	91.465	91.924	0.090668					59	33	3	0	0	0	0.36786	1	24318	24318		9.3831	0.63772	1	186370			25960	2552	14774	14775	32533	32533					0.10790722994033786
LPVPHPILI	9	Unmodified	_LPVPHPILI_					0	0	0		ENST00000532395.5_1_17:72947667-72950470:-|nuORF;nc|ENSG00000167861|Q8IV36-3|HID1;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1	ENST00000532395.5_1_17:72947667-72950470:-|nuORF	ENST00000532395.5_1_17:72947667-72950470:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.82373046875	2	499.823495	997.632438	0.27361	0.00013676	0.35252	0.0001762	0.62612	0.00031295	499.82356623496395	65.375	0.66839	65.375	65.1	65.768	0					56	23	3	0	0	0	0.0096669	2	16289	16289;16339		79.935	34.185	1	574060			25961	6218	14775	14776	32534;32535	32534					0.1335270210466888
LPVPHPILI	9	Unmodified	_LPVPHPILI_					0	0	0		ENST00000532395.5_1_17:72947667-72950470:-|nuORF;nc|ENSG00000167861|Q8IV36-3|HID1;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1	ENST00000532395.5_1_17:72947667-72950470:-|nuORF	ENST00000532395.5_1_17:72947667-72950470:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.8238525390625	2	499.823495	997.632438	-0.032954	-1.6471E-05	0.63853	0.00031915	0.60557	0.00030268	499.8237385732408	65.296	0.74947	65.385	65.034	65.784	0.088882					61	27	3	0	0	0	0.0096669	1	16274	16274		79.935	34.185	1	519040			25962	6218	14775	14776	32536	32536					0.1335270210466888
LPVPHPILI	9	Unmodified	_LPVPHPILI_					0	0	0		ENST00000532395.5_1_17:72947667-72950470:-|nuORF;nc|ENSG00000167861|Q8IV36-3|HID1;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1	ENST00000532395.5_1_17:72947667-72950470:-|nuORF	ENST00000532395.5_1_17:72947667-72950470:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.8237609863281	2	499.823495	997.632438	0.26243	0.00013117	0.40738	0.00020362	0.6698	0.00033478	499.82361341332404	65.449	0.72504	65.437	65.074	65.799	-0.01133					58	26	3	0	0	0	0.0096669	1	16308	16308		79.935	23.886	1	552130			25963	6218	14775	14776	32537	32537					0.1335270210466888
LPVPLLTI	8	Unmodified	_LPVPLLTI_					0	0	0		ENSG00000149084|ENST00000278353|HSD17B12;ENST00000533802.5_2_11:43855633-43876795:+|nuORF;ENST00000533090.6_2_11:43852474-43876795:+|nuORF	ENSG00000149084|ENST00000278353|HSD17B12	ENSG00000149084|ENST00000278353|HSD17B12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.9328918457031	2	433.291497	864.568441	0.042377	1.8362E-05	-0.23319	-0.00010104	-0.19081	-8.2676E-05	433.291301155496	88.075	0.43317	88.164	88	88.433	0.089203					32	21	2	0	0	0	0.33245	1	23258	23258		13.508	4.1604	1	102070			25964	4841	14776	14777	32538	32538					0.13073921947693634
LPVPRGHRF	9	Unmodified	_LPVPRGHRF_					0	0	0		ENST00000360325.11_1_17:7165522-7165789:-|nuORF	ENST00000360325.11_1_17:7165522-7165789:-|nuORF	ENST00000360325.11_1_17:7165522-7165789:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.817626953125	2	539.817067	1077.61958	0.25094	0.00013546	1.1309	0.0006105	1.3819	0.00074597	539.8178782064406	75.772	1.6032	75.772	74.871	76.474	0					79	57	2	0	0	0	0.23775	1	19521	19521		18.135	18.135	1	2090400			25965	9677	14777	14778	32539	32539					0.08387683765113252
LPVPRGHRF	9	Unmodified	_LPVPRGHRF_					0	0	0		ENST00000360325.11_1_17:7165522-7165789:-|nuORF	ENST00000360325.11_1_17:7165522-7165789:-|nuORF	ENST00000360325.11_1_17:7165522-7165789:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.818359375	2	539.817067	1077.61958	0.4251	0.00022947	0.76936	0.00041531	1.1945	0.00064479	539.8177910620582	75.765	1.7292	75.818	74.783	76.512	0.053314					85	62	2	0	0	0	0.27532	1	19411	19411		12.532	12.532	1	1895600			25966	9677	14777	14778	32540	32540					0.08387683765113252
LPVPSPSL	8	Unmodified	_LPVPSPSL_					0	0	0		ENST00000409443.6_1_2:172016940-172017408:-|nuORF;ENST00000565074.1_1_15:75501395-75501497:+|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2420654296875	2	405.242004	808.469455	0.13585	5.5052E-05	-0.16431	-6.6587E-05	-0.028464	-1.1535E-05	405.24183191108125	54.945	1.6675	54.945	54.268	55.935	0					116	60	2	0	0	0	0.058048	3	13190	13069;13121;13190		74.396	0	1	1580400			25967	10249	14778	14779	32541;32542;32543	32543					0.057558989827953155
LPVQKSGI	8	Unmodified	_LPVQKSGI_					0	0	0		nc|ENSG00000244005|Q9Y697-2|NFS1;ENSG00000244005|ENST00000374092|NFS1	nc|ENSG00000244005|Q9Y697-2|NFS1	nc|ENSG00000244005|Q9Y697-2|NFS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.25946044921875	2	421.260728	840.506903	0.20828	8.7741E-05	-1.6889	-0.00071148	-1.4806	-0.00062374	421.2599708944087	77.337	1.3095	77.393	76.667	77.977	0.05542					89	46	3	0	0	0	0.42077	1	19975	19975		15.847	0	1	482810			25968	8565	14779	14780	32544	32544					0.08026990248424681
LPVQSPPVFSH	11	Unmodified	_LPVQSPPVFSH_					0	0	0		ENST00000395443.6_1_3:49094899-49114251:-|nuORF	ENST00000395443.6_1_3:49094899-49114251:-|nuORF	ENST00000395443.6_1_3:49094899-49114251:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.8355102539062	2	604.327131	1206.63971	0.52518	0.00031738	0.10495	6.3425E-05	0.63013	0.0003808	604.3272692561616	45.765	0.81631	45.83	45.33	46.146	0.065048					48	29	2	0	0	0	0.32951	1	10343	10343		5.2969	1.7004	1	255730			25969	10088	14780	14781	32545	32545					0.04465389914412299
LPVRAARL	8	Unmodified	_LPVRAARL_					0	0	0		ENST00000303004.4_1_20:48807959-48808286:+|nuORF	ENST00000303004.4_1_20:48807959-48808286:+|nuORF	ENST00000303004.4_1_20:48807959-48808286:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.8486328125	2	448.295436	894.57632	0.0077894	3.492E-06	-0.85988	-0.00038548	-0.85209	-0.00038199	448.2950476048864	29.642	0.40955	29.656	29.564	29.974	0.013474					22	13	2	0	0	0	0.34319	1	5337	5337		5.7604	0	1	60850			25970	9243	14781	14782	32546	32546					0.12481493987820613
LPVRGVLL	8	Unmodified	_LPVRGVLL_					0	0	0			REV__nc|ENSG00000102780|Q86XP1-5|DGKH	REV__nc|ENSG00000102780|Q86XP1-5|DGKH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.2684326171875	2	433.794738	865.574923	0.4244	0.0001841	0.063969	2.7749E-05	0.48837	0.00021185	433.7946406770863	56.387	0.5582	56.466	56.146	56.704	0.078674					23	20	2	0	0	0	0.29855	1	13499	13499		32.117	0	1	269390	+		25971	14332	14782	14783	32547	32547					0.13675859899092302
LPVRIPII	8	Unmodified	_LPVRIPII_					0	0	0		ENST00000520962.1_1_8:94858812-94858854:-|nuORF	ENST00000520962.1_1_8:94858812-94858854:-|nuORF	ENST00000520962.1_1_8:94858812-94858854:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.8182678222656	2	460.818213	919.621873	-0.044585	-2.0545E-05	0.37054	0.00017075	0.32596	0.00015021	460.8182999182508	69.17	1.1265	69.17	68.872	69.999	0					63	40	2	0	0	0	0.082568	1	17491	17491		63.563	0	1	1073200			25972	11481	14783	14784	32548	32548					0.15884719450230023
LPVRIPII	8	Unmodified	_LPVRIPII_					0	0	0		ENST00000520962.1_1_8:94858812-94858854:-|nuORF	ENST00000520962.1_1_8:94858812-94858854:-|nuORF	ENST00000520962.1_1_8:94858812-94858854:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.8182373046875	2	460.818213	919.621873	0.10179	4.6906E-05	0.23983	0.00011052	0.34162	0.00015742	460.8182548572144	69.279	1.1312	69.257	68.918	70.049	-0.022087					65	40	2	0	0	0	0.058048	1	17506	17506		74.396	10.833	1	1190700			25973	11481	14783	14784	32549	32549					0.15884719450230023
LPVRLANI	8	Unmodified	_LPVRLANI_					0	0	0		ENSG00000005882|ENST00000503176|PDK2;PDK1|p.E82_L83insAERNREEVIRQE|1|0.04|ENSG00000152256|chr2:172558748-172558749|-/CGGCAAGAGGCTGAGAGAAATAGAGAGGAAGTTATC|inframe_insertion;ENST00000508960.1_1_17:48172799-48174929:+|nuORF;ENST00000473301.1_1_7:95224333-95225617:-|nuORF;ENST00000505897.5_1_17:48172799-48183513:+|nuORF;PDK4|p.R305Pfs*14|1|0.13|ENSG00000004799|chr7:95587485-95587485|C/-|frameshift_variant;ENSG00000004799|ENST00000005178|PDK4;ENSG00000152256|ENST00000282077|PDK1;nc|ENSG00000152256|Q15118-2|PDK1	ENSG00000005882|ENST00000503176|PDK2;ENSG00000152256|ENST00000282077|PDK1	ENSG00000005882|ENST00000503176|PDK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2899475097656	2	448.28982	894.565087	0.25135	0.00011268	0.11913	5.3404E-05	0.37048	0.00016608	448.2898198675999	51.699	1.026	51.699	51.382	52.408	0					87	37	4	0	0	0	0.014355	3	12084	12033;12084;12134		109.63	35.233	1	3963300			25974	345;5011	14784	14785	32550;32551;32552	32551					0.1135867189370856
LPVRLANI	8	Unmodified	_LPVRLANI_					0	0	0		ENSG00000005882|ENST00000503176|PDK2;PDK1|p.E82_L83insAERNREEVIRQE|1|0.04|ENSG00000152256|chr2:172558748-172558749|-/CGGCAAGAGGCTGAGAGAAATAGAGAGGAAGTTATC|inframe_insertion;ENST00000508960.1_1_17:48172799-48174929:+|nuORF;ENST00000473301.1_1_7:95224333-95225617:-|nuORF;ENST00000505897.5_1_17:48172799-48183513:+|nuORF;PDK4|p.R305Pfs*14|1|0.13|ENSG00000004799|chr7:95587485-95587485|C/-|frameshift_variant;ENSG00000004799|ENST00000005178|PDK4;ENSG00000152256|ENST00000282077|PDK1;nc|ENSG00000152256|Q15118-2|PDK1	ENSG00000005882|ENST00000503176|PDK2;ENSG00000152256|ENST00000282077|PDK1	ENSG00000005882|ENST00000503176|PDK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.2901916503906	2	448.28982	894.565087	0.18557	8.319E-05	0.2619	0.00011741	0.44747	0.0002006	448.2898669670333	51.667	0.95888	51.714	51.454	52.413	0.046574					80	34	4	0	0	0	0.023679	3	12052	12052;12103;12159		97.075	25.323	1	4369500			25975	345;5011	14784	14785	32553;32554;32555	32553					0.1135867189370856
LPVRLANI	8	Unmodified	_LPVRLANI_					0	0	0		ENSG00000005882|ENST00000503176|PDK2;PDK1|p.E82_L83insAERNREEVIRQE|1|0.04|ENSG00000152256|chr2:172558748-172558749|-/CGGCAAGAGGCTGAGAGAAATAGAGAGGAAGTTATC|inframe_insertion;ENST00000508960.1_1_17:48172799-48174929:+|nuORF;ENST00000473301.1_1_7:95224333-95225617:-|nuORF;ENST00000505897.5_1_17:48172799-48183513:+|nuORF;PDK4|p.R305Pfs*14|1|0.13|ENSG00000004799|chr7:95587485-95587485|C/-|frameshift_variant;ENSG00000004799|ENST00000005178|PDK4;ENSG00000152256|ENST00000282077|PDK1;nc|ENSG00000152256|Q15118-2|PDK1	ENSG00000005882|ENST00000503176|PDK2;ENSG00000152256|ENST00000282077|PDK1	ENSG00000005882|ENST00000503176|PDK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.2898254394531	2	448.28982	894.565087	0.13806	6.1893E-05	0.26005	0.00011658	0.39811	0.00017847	448.2898551791179	51.731	1.1062	51.741	51.452	52.559	0.0095634					91	40	4	0	0	0	0.014355	3	12095	12045;12095;12137		109.63	35.233	1	4558000			25976	345;5011	14784	14785	32556;32557;32558	32557					0.1135867189370856
LPVRLPLA	8	Unmodified	_LPVRLPLA_					0	0	0		ENST00000292591.11_1_5:179228908-179233794:-|nuORF	ENST00000292591.11_1_5:179228908-179233794:-|nuORF	ENST00000292591.11_1_5:179228908-179233794:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.75274658203125	2	439.794738	877.574923	0.48063	0.00021138	-0.64642	-0.00028429	-0.16579	-7.2915E-05	439.7943457381931	58.358	0.3264	58.344	58.09	58.416	-0.014267					13	11	2	0	0	0	0.32435	1	14099	14099		16.942	0	1	100080			25977	9163	14785	14786	32559	32559					0.1312385989908762
LPVRPQPLL	9	Unmodified	_LPVRPQPLL_					0	0	0		ENST00000314134.3_1_11:45826648-45827152:+|nuORF	ENST00000314134.3_1_11:45826648-45827152:+|nuORF	ENST00000314134.3_1_11:45826648-45827152:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7614135742188	2	516.831852	1031.64915	0.29346	0.00015167	-0.058437	-3.0202E-05	0.23502	0.00012147	516.8318279991859	61.943	0.61541	61.943	61.677	62.292	0					37	22	2	0	0	0	0.21905	1	15244	15244		16.942	1.0951	1	198960			25978	9339	14786	14787	32560	32560					0.1345920299061163
LPVRPQPLL	9	Unmodified	_LPVRPQPLL_					0	0	0		ENST00000314134.3_1_11:45826648-45827152:+|nuORF	ENST00000314134.3_1_11:45826648-45827152:+|nuORF	ENST00000314134.3_1_11:45826648-45827152:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7612915039062	2	516.831852	1031.64915	-0.1078	-5.5713E-05	0.276	0.00014265	0.16821	8.6935E-05	516.8321446463846	61.889	0.687	61.986	61.67	62.357	0.096985					41	24	3	0	0	0	0.21905	1	15208	15208		16.942	6.8684	1	246200			25979	9339	14786	14787	32561	32561					0.1345920299061163
LPVRPQPLL	9	Unmodified	_LPVRPQPLL_					0	0	0		ENST00000314134.3_1_11:45826648-45827152:+|nuORF	ENST00000314134.3_1_11:45826648-45827152:+|nuORF	ENST00000314134.3_1_11:45826648-45827152:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7615356445312	2	516.831852	1031.64915	0.030953	1.5997E-05	0.28493	0.00014726	0.31588	0.00016326	516.8320013638171	61.967	0.49087	61.958	61.7	62.191	-0.0085526					32	17	2	0	0	0	0.21905	1	15280	15280		16.942	2.104	1	232120			25980	9339	14786	14787	32562	32562					0.1345920299061163
LPVRSFSF	8	Unmodified	_LPVRSFSF_					0	0	0		ENST00000394986.5_1_4:90757962-90758253:-|nuORF	ENST00000394986.5_1_4:90757962-90758253:-|nuORF	ENST00000394986.5_1_4:90757962-90758253:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.310791015625	2	476.766178	951.517802	0.14032	6.69E-05	-0.069397	-3.3086E-05	0.070923	3.3814E-05	476.7660392880834	57.951	0.58496	57.951	57.743	58.328	0					34	20	2	0	0	0	0.28769	1	14078	14078		37.974	1.9298	1	241900			25981	10081	14787	14788	32563	32563					0.04010392622706149
LPVRSFSF	8	Unmodified	_LPVRSFSF_					0	0	0		ENST00000394986.5_1_4:90757962-90758253:-|nuORF	ENST00000394986.5_1_4:90757962-90758253:-|nuORF	ENST00000394986.5_1_4:90757962-90758253:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	476.766178	951.517802	0.28091	0.00013393	-0.1921	-9.1585E-05	0.088812	4.2342E-05	476.76598473194105	57.804	0.67702	57.89	57.659	58.336	0.085621	-0.030704	-5.1363E-05	NaN	37.974	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261840			25982	10081	14787	14788							0.04010392622706149
LPVRTLSI	8	Unmodified	_LPVRTLSI_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7897033691406	2	449.789653	897.564752	0.21957	9.8761E-05	-0.67505	-0.00030363	-0.45548	-0.00020487	449.78931941930705	49.999	0.92225	49.999	49.701	50.623	0					75	33	3	0	0	0	0.069188	1	11519	11519		69.105	11.634	1	2997300			25983	1047	14788	14789	32564	32564					0.11187252173851903
LPVRTLSI	8	Unmodified	_LPVRTLSI_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	449.789653	897.564752	0.44088	0.0001983	-0.84031	-0.00037796	-0.39943	-0.00017966	449.78924110687683	49.97	0.8776	50.015	49.776	50.654	0.044891	0.015734	-3.9539E-05	NaN	69.105	75	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3087400			25984	1047	14788	14789							0.11187252173851903
LPVRTLSI	8	Unmodified	_LPVRTLSI_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	449.789653	897.564752	0.48642	0.00021879	-0.8435	-0.0003794	-0.35709	-0.00016061	449.7892257795141	49.964	1.0993	49.985	49.719	50.818	0.020691	-0.015035	-4.241E-05	NaN	69.105	86	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3008000			25985	1047	14788	14789							0.11187252173851903
LPVRVALLS	9	Unmodified	_LPVRVALLS_					0	0	0		ENST00000534270.1_1_8:145742254-145742921:-|nuORF	ENST00000534270.1_1_8:145742254-145742921:-|nuORF	ENST00000534270.1_1_8:145742254-145742921:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.26611328125	2	484.318577	966.622602	0.31	0.00015014	-0.34827	-0.00016868	-0.038274	-1.8537E-05	484.3183566277205	66.402	0.77334	66.486	66.219	66.992	0.083824					77	27	4	0	0	0	0.12743	1	16586	16586		37.974	3.5723	1	796400			25986	11655	14789	14790	32565	32565					0.13795514099274442
LPVSIIGLIS	10	Unmodified	_LPVSIIGLIS_					0	0	0			REV__ENST00000553986.1_1_14:60616802-60619887:-|nuORF	REV__ENST00000553986.1_1_14:60616802-60619887:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7544250488281	2	506.326068	1010.63758	0.33851	0.0001714	0.054462	2.7576E-05	0.39297	0.00019897	506.3258989237973	70.648	0.66438	70.648	70.325	70.989	0					37	23	2	0	0	0	0.29038	1	17997	17997		24.021	10.978	1	274400	+		25987	14214	14790	14791	32566	32566					0.13268961176606808
LPVSKGTGMLI	11	Unmodified	_LPVSKGTGMLI_					0	0	0			REV__ENST00000303596.2_1_16:67877760-67877943:+|nuORF	REV__ENST00000303596.2_1_16:67877760-67877943:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.792724609375	2	558.328285	1114.64202	0.23278	0.00012997	0.23821	0.000133	0.47099	0.00026297	558.328105858591	69.975	0.60285	69.953	69.701	70.304	-0.022079					29	21	2	0	0	0	0.32778	1	17632	17632		6.7232	0	1	117530	+		25988	19841	14791	14792	32567	32567					0.08928102327899978
LPVSLPQI	8	Unmodified	_LPVSLPQI_					0	0	0		ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.77081298828125	2	433.770929	865.527304	-0.053876	-2.337E-05	0.89642	0.00038884	0.84254	0.00036547	433.77083925688726	74.405	1.9652	74.457	73.95	75.915	0.052361					93	70	2	0	0	0	0.095164	1	19014	19014		61.357	3.8861	1	1103000			25989	795	14792	14793	32568	32568					0.08916160908222537
LPVSRLVSL	9	Unmodified	_LPVSRLVSL_					0	0	0		ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1;ENST00000526443.5_1_11:14535901-14541492:-|nuORF;ENST00000528307.5_1_11:14535901-14541893:-|nuORF	ENSG00000129084|ENST00000396394|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.8004150390625	2	492.316035	982.617516	0.36969	0.00018201	-0.49797	-0.00024516	-0.12828	-6.3153E-05	492.31577958320696	58.102	0.44404	58.102	57.854	58.298	0					29	15	2	0	0	0	0.17263	1	14052	14052		38.615	14.594	1	433540			25990	3409	14793	14794	32569	32569					0.12551210236654242
LPVSRLVSL	9	Unmodified	_LPVSRLVSL_					0	0	0		ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1;ENST00000526443.5_1_11:14535901-14541492:-|nuORF;ENST00000528307.5_1_11:14535901-14541893:-|nuORF	ENSG00000129084|ENST00000396394|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.8001708984375	2	492.316035	982.617516	0.39372	0.00019384	-0.45975	-0.00022634	-0.066032	-3.2508E-05	492.3157633683087	57.908	0.43376	57.993	57.788	58.222	0.085621					28	15	2	0	0	0	0.18479	1	14005	14005		34.932	13.395	1	435310			25991	3409	14793	14794	32570	32570					0.12551210236654242
LPVSRLVSL	9	Unmodified	_LPVSRLVSL_					0	0	0		ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1;ENST00000526443.5_1_11:14535901-14541492:-|nuORF;ENST00000528307.5_1_11:14535901-14541893:-|nuORF	ENSG00000129084|ENST00000396394|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.3162536621094	2	492.316035	982.617516	0.50491	0.00024857	-0.36915	-0.00018174	0.13575	6.6833E-05	492.31584990490614	58.114	0.53518	58.097	57.793	58.329	-0.0172					40	19	3	0	0	0	0.18479	1	14080	14080		34.932	18.783	1	522770			25992	3409	14793	14794	32571	32571					0.12551210236654242
LPVTSLVQAAP	11	Unmodified	_LPVTSLVQAAP_					0	0	0			REV__ENSG00000136478|ENST00000584379|TEX2	REV__ENSG00000136478|ENST00000584379|TEX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.803466796875	2	548.324057	1094.63356	0.47362	0.0002597	-1.0101	-0.00055386	-0.53647	-0.00029416	548.323657833286	30.694	0.231	30.722	30.638	30.869	0.027946					12	7	2	0	0	0	0.329	1	5639	5639		9.3831	1.473	1	105900	+		25993	15810	14794	14795	32572	32572					0.09002871682901059
LPVVCWFL	8	Unmodified	_LPVVCWFL_					0	0	0		ENST00000592456.1_1_17:76167504-76168014:+|nuORF	ENST00000592456.1_1_17:76167504-76168014:+|nuORF	ENST00000592456.1_1_17:76167504-76168014:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7696838378906	2	488.769874	975.525196	0.15869	7.7562E-05	-0.16649	-8.1374E-05	-0.0077992	-3.812E-06	488.7696272251692	22.331	0.40013	22.331	22.133	22.533	0					30	13	3	0	0	0	0.43455	1	3123	3123		11.114	1.767	1	126480			25994	12197	14795	14796	32573	32573					0.03645408898773894
LPVVLPLL	8	Unmodified	_LPVVLPLL_					0	0	0		ENSG00000113273|ENST00000264914|ARSB;nc|ENSG00000113273|P15848-2|ARSB	ENSG00000113273|ENST00000264914|ARSB	ENSG00000113273|ENST00000264914|ARSB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.3017578125	2	432.301865	862.589176	-0.10295	-4.4504E-05	0.36741	0.00015883	0.26446	0.00011433	432.3019591237748	94.11	0.86268	94.197	93.904	94.767	0.08667					160	70	4	0	0	0	0.079765	1	25104	25104		64.081	22.264	1	1163400			25995	2487	14796	14797	32574	32574					0.1523851232738025
LPVVLPLL	8	Unmodified	_LPVVLPLL_					0	0	0		ENSG00000113273|ENST00000264914|ARSB;nc|ENSG00000113273|P15848-2|ARSB	ENSG00000113273|ENST00000264914|ARSB	ENSG00000113273|ENST00000264914|ARSB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.3018798828125	2	432.301865	862.589176	0.033324	1.4406E-05	0.23269	0.00010059	0.26601	0.000115	432.301906024602	94.256	0.94468	94.254	93.924	94.868	-0.0020142					172	78	3	0	0	0	0.079765	2	25107	25107;25146		64.081	22.264	1	1047700			25996	2487	14796	14797	32575;32576	32575					0.1523851232738025
LPVVLPLL	8	Unmodified	_LPVVLPLL_					0	0	0		ENSG00000113273|ENST00000264914|ARSB;nc|ENSG00000113273|P15848-2|ARSB	ENSG00000113273|ENST00000264914|ARSB	ENSG00000113273|ENST00000264914|ARSB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	432.301865	862.589176	-0.24235	-0.00010477	0.44537	0.00019254	0.20302	8.7765E-05	432.3019880706146	94.232	0.7827	94.232	93.943	94.726	0	0.0040946	8.2005E-05	NaN	64.081	170	67	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	862430			25997	2487	14796	14797							0.1523851232738025
LPVVLPPIM	9	Oxidation (M)	_LPVVLPPIM(Oxidation (M))_		LPVVLPPIM(1)		LPVVLPPIM(56)	0	0	1		ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENST00000407704.1_1_2:24534520-24550951:-|nuORF	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.8039245605469	2	497.803914	993.593275	0.50718	0.00025248	-0.06902	-3.4358E-05	0.43816	0.00021812	497.8037008255027	76.975	0.99683	76.975	76.559	77.555	0					85	36	4	0	0	0	0.041522	2	19813	19813;19865		56.048	46.701	1	848140			25998	8070	14797	14798	32577;32578	32577		878			0.0962223375878466
LPVVLPPIM	9	Oxidation (M)	_LPVVLPPIM(Oxidation (M))_		LPVVLPPIM(1)		LPVVLPPIM(56)	0	0	1		ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENST00000407704.1_1_2:24534520-24550951:-|nuORF	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.8038330078125	2	497.803914	993.593275	0.3691	0.00018374	0.085882	4.2752E-05	0.45498	0.00022649	497.8037643451691	76.856	0.78766	76.909	76.641	77.428	0.053757					68	27	3	0	0	0	0.041522	2	19779	19779;19834		56.048	46.701	1	1060000			25999	8070	14797	14798	32579;32580	32579		878			0.0962223375878466
LPVVLPPIM	9	Oxidation (M)	_LPVVLPPIM(Oxidation (M))_		LPVVLPPIM(1)		LPVVLPPIM(94)	0	0	1		ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENST00000407704.1_1_2:24534520-24550951:-|nuORF	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.8040466308594	2	497.803914	993.593275	0.62899	0.00031311	-0.22902	-0.00011401	0.39997	0.00019911	497.8036458483094	77.034	0.80426	77.002	76.626	77.43	-0.031334					69	29	3	0	0	0	0.0040737	2	19846	19800;19846		93.763	79.181	1	998590			26000	8070	14797	14798	32581;32582	32582		878			0.0962223375878466
LPVYYHGKL	9	Unmodified	_LPVYYHGKL_					0	0	0			REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7761840820312	2	545.30821	1088.60187	0.59046	0.00032198	1.7898	0.00097602	2.3803	0.001298	545.308304804535	45.019	0.4887	45.019	44.802	45.291	0					40	17	3	0	0	0	0.18943	1	10076	10076		30.225	6.2042	1	380280	+		26001	23101	14798	14799	32583	32583					0.06110923719620587
LPWAGQLLF	9	Unmodified	_LPWAGQLLF_					0	0	0			REV__ENSG00000240403|ENST00000326321|KIR3DL2	REV__ENSG00000240403|ENST00000326321|KIR3DL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.81201171875	2	522.797478	1043.5804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.579	1	86.663	86.163	87.163	0.084251								0	0	0	0.22789	1	22785	22785		13.508	2.684	1		+		26002	19170	14799	14800	32584	32584					0.060355386908895525
LPWEKKKYF	9	Unmodified	_LPWEKKKYF_					0	0	0		ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.24725341796875	3	413.569253	1237.68593	0.086102	3.5609E-05	-0.082346	-3.4056E-05	0.0037567	1.5536E-06	413.90353280448875	65.022	0.33769	65.111	64.933	65.27	0.088882					15	12	2	0	0	0	0.25949	1	16153	16153		2.4985	0	1	75682			26003	2379	14800	14801	32585	32585					0.07659454816507605
LPWILIVII	9	Unmodified	_LPWILIVII_					0	0	0		ENSG00000112309|ENST00000230053|B3GAT2	ENSG00000112309|ENST00000230053|B3GAT2	ENSG00000112309|ENST00000230053|B3GAT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.363525390625	2	540.364996	1078.71544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.014	1	40.107	39.607	40.607	0.09267								0	0	0	0.25352	1	8495	8495		5.2307	0	1				26004	2430	14801	14802	32586	32586					0.17923018832652815
LPWISSLV	8	Unmodified	_LPWISSLV_					0	0	0		nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1;ENST00000528882.5_1_11:57067274-57087552:-|nuORF	nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7709045410156	2	457.770929	913.527304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.188	1	85.175	84.675	85.675	-0.01284								0	0	0	0.33625	1	22352	22352		20.871	0	1				26005	11591	14802	14803	32587	32587					0.06708160908237915
LPWLGLAMP	9	Unmodified	_LPWLGLAMP_					0	0	0			REV__ENST00000598095.5_1_19:49842746-49843241:+|nuORF	REV__ENST00000598095.5_1_19:49842746-49843241:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.76678466796875	2	499.280606	996.546659	0.11773	5.878E-05	1.0175	0.00050802	1.1352	0.0005668	499.2809319833938	46.395	0.21867	46.449	46.383	46.602	0.054371					10	7	2	0	0	0	0.24542	1	10488	10488		9.3474	0	1	421960	+		26006	22614	14803	14804	32588	32588					0.048247939274801865
LPWLILTP	8	Unmodified	_LPWLILTP_					0	0	0		ENST00000272198.10_1_1:203020413-203020764:+|nuORF	ENST00000272198.10_1_1:203020413-203020764:+|nuORF	ENST00000272198.10_1_1:203020413-203020764:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.80609130859375	2	476.796946	951.57934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.094	1	17.977	17.477	18.477	-0.11739								0	0	0	0.36169	1	1830	1830		9.3474	0	1				26007	9086	14804	14805	32589	32589					0.10161324321984466
LPWLLAFFIL	10	Unmodified	_LPWLLAFFIL_					0	0	0		ENSG00000159527|ENST00000683862|PGLYRP3	ENSG00000159527|ENST00000683862|PGLYRP3	ENSG00000159527|ENST00000683862|PGLYRP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.9115295410156	3	411.586244	1231.7369	-1.282	-0.00052766	1.1752	0.00048368	-0.10685	-4.3977E-05	411.58679166871195	34.62	0.46318	34.695	34.47	34.933	0.075302					25	16	3	0	0	0	0.36015	1	6809	6809		10.8	0	1	98320			26008	5412	14805	14806	32590	32590					0.1303040386135308
LPWSNPLKV	9	Unmodified	_LPWSNPLKV_					0	0	0		ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.8711547851562	2	527.30821	1052.60187	0.42223	0.00022264	-1.0879	-0.00057364	-0.66564	-0.000351	527.3079250708932	62.28	0.577	62.377	62.058	62.635	0.096989					32	20	2	0	0	0	0.20381	1	15335	15335		18.373	0.23811	1	271070			26009	3753	14806	14807	32591	32591					0.07766923719623264
LPWSNPLKV	9	Unmodified	_LPWSNPLKV_					0	0	0		ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.8712158203125	2	527.30821	1052.60187	0.56482	0.00029783	-1.281	-0.00067548	-0.71617	-0.00037764	527.3079550172889	62.35	0.47504	62.342	62.067	62.542	-0.0085526					35	17	3	0	0	0	0.21026	1	15358	15358		22.658	4.5231	1	364340			26010	3753	14806	14807	32592	32592					0.07766923719623264
LPWSPRTSR	9	Unmodified	_LPWSPRTSR_					0	0	0			REV__ENST00000586361.5_1_19:36386955-36387291:-|nuORF	REV__ENST00000586361.5_1_19:36386955-36387291:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3067626953125	2	550.30399	1098.59343	0.43171	0.00023757	1.3547	0.00074552	1.7865	0.0009831	550.3037256762793	19.565	0.92285	19.449	19.145	20.068	-0.11592					69	31	3	0	0	0	0.33276	1	2342	2342		3.9444	0.66309	1	132230	+		26011	22517	14807	14808	32593	32593					0.04807369802983885
LPWTAEQVV	9	Unmodified	_LPWTAEQVV_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;ENST00000528593.1_1_11:46804822-46806223:-|nuORF	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.7821044921875	2	521.782025	1041.5495	0.45533	0.00023758	-0.33621	-0.00017543	0.11912	6.2153E-05	521.7819837628352	67.849	0.60984	67.849	67.592	68.202	0					35	21	2	0	0	0	0.17277	2	17026	17026;17080		27.629	14.121	1	668730			26012	6847	14808	14809	32594;32595	32594					0.030383405859993218
LPWTAEQVV	9	Unmodified	_LPWTAEQVV_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;ENST00000528593.1_1_11:46804822-46806223:-|nuORF	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.7821655273438	2	521.782025	1041.5495	0.55579	0.00029	-0.59396	-0.00030992	-0.038172	-1.9917E-05	521.7818488319535	67.742	0.64676	67.82	67.546	68.193	0.078041					38	22	2	0	0	0	0.10059	1	17006	17006		38.176	24.27	1	576750			26013	6847	14808	14809	32596	32596					0.030383405859993218
LPWTAEQVV	9	Unmodified	_LPWTAEQVV_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;ENST00000528593.1_1_11:46804822-46806223:-|nuORF	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.7821044921875	2	521.782025	1041.5495	0.37491	0.00019562	0.61254	0.00031961	0.98745	0.00051524	521.7820264612387	67.795	0.69341	67.778	67.506	68.2	-0.016296					48	24	3	0	0	0	0.079752	1	17016	17016		41.84	22.401	1	524660			26014	6847	14808	14809	32597	32597					0.030383405859993218
LPWTSPHS	8	Unmodified	_LPWTSPHS_					0	0	0		ENST00000578759.1_1_17:60214444-60217453:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.2311096191406	2	462.732335	923.450116	0.11413	5.2814E-05	0.77498	0.00035861	0.88912	0.00041142	462.73251356283265	66.615	1.0389	66.615	66.183	67.222	0					54	36	2	0	0	0	0.34185	1	16714	16714		10.183	10.183	1	574540			26015	1497	14809	14810	32598	32598					-0.014670573080934446
LPWTSPHS	8	Unmodified	_LPWTSPHS_					0	0	0		ENST00000578759.1_1_17:60214444-60217453:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.23089599609375	2	462.732335	923.450116	0.10356	4.7921E-05	0.55307	0.00025592	0.65663	0.00030385	462.7324991382404	66.509	0.82175	66.593	66.083	66.905	0.083832					66	29	3	0	0	0	0.34185	1	16653	16653		2.5775	2.5775	1	570170			26016	1497	14809	14810	32599	32599					-0.014670573080934446
LPWVSLIWVTL	11	Unmodified	_LPWVSLIWVTL_					0	0	0			REV__ENST00000436129.2_1_20:60551226-60583162:-|nuORF	REV__ENST00000436129.2_1_20:60551226-60583162:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.27581787109375	3	442.932191	1325.77475	0.22142	9.8073E-05	0.55244	0.00024469	0.77386	0.00034277	442.93265385021266	86.5	1.6173	86.585	85.367	86.984	0.084251					101	63	2	0	0	0	0.40256	1	22867	22867		10.899	0.58372	1	839170	+		26017	21002	14810	14811	32600	32600					0.12488870056176893
LPWWCILV	8	Unmodified	_LPWWCILV_					0	0	0		nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-2|PKD1L2;ENST00000533478.5_1_16:81157348-81174942:-|nuORF	nc|ENSG00000166473|Q7Z442|PKD1L2	nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7323608398438	2	515.283149	1028.55174	0.35286	0.00018182	3.785	0.0019504	4.1379	0.0021322	515.2841586611072	72.967	0.49905	72.938	72.627	73.126	-0.029305					22	17	2	0	0	0	0.33618	1	18568	18568		11.114	0.29054	1	79544			26018	12817	14811	14812	32601	32601					0.03861097790104395
LPYCCIIEKF	10	Unmodified	_LPYCCIIEKF_					0	0	0			REV__ENSG00000166603|ENST00000299766|MC4R	REV__ENSG00000166603|ENST00000299766|MC4R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.23602294921875	3	410.208339	1227.60319	0.0064134	2.6308E-06	0.99733	0.00040911	1.0037	0.00041174	410.208816138303	32.824	1.4975	32.824	32.091	33.589	0					95	53	2	0	0	0	0.3179	1	6491	6491		5.7834	5.7834	1	369040	+		26019	17331	14812	14813	32602	32602					-0.0015094629816303495
LPYDFSRV	8	Unmodified	_LPYDFSRV_					0	0	0		nc|ENSG00000151490|Q16827-3|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-4|PTPRO;nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-3|PTPRO	nc|ENSG00000151490|Q16827-3|PTPRO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2403259277344	2	498.761092	995.507631	0.45912	0.00022899	-0.18485	-9.2198E-05	0.27427	0.00013679	498.76085760709213	53.038	0.53394	53.038	52.824	53.358	0					24	19	2	0	0	0	0.32937	1	12463	12463		12.241	1.4167	1	213230			26020	4965	14813	14814	32603	32603					0.009697848974724366
LPYDSKHQI	9	Unmodified	_LPYDSKHQI_					0	0	0		nc|ENSG00000134242|Q9Y2R2-6|PTPN22;nc|ENSG00000134242|Q9Y2R2-2|PTPN22;ENST00000484147.5_1_1:114375712-114414257:-|nuORF;nc|ENSG00000134242|Q9Y2R2-4|PTPN22;nc|ENSG00000134242|Q9Y2R2|PTPN22;ENSG00000134242|ENST00000359785|PTPN22;nc|ENSG00000134242|Q9Y2R2-3|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.790771484375	2	550.790381	1099.56621	0.49232	0.00027116	0.71107	0.00039165	1.2034	0.00066282	550.7903120411355	29.001	0.65298	29.001	28.76	29.413	0					63	23	4	0	0	0	0.0046246	1	5151	5151		89.401	41.806	1	386500			26021	3762	14814	14815	32604	32604					0.02040841471944077
LPYDSKHQI	9	Unmodified	_LPYDSKHQI_					0	0	0		nc|ENSG00000134242|Q9Y2R2-6|PTPN22;nc|ENSG00000134242|Q9Y2R2-2|PTPN22;ENST00000484147.5_1_1:114375712-114414257:-|nuORF;nc|ENSG00000134242|Q9Y2R2-4|PTPN22;nc|ENSG00000134242|Q9Y2R2|PTPN22;ENSG00000134242|ENST00000359785|PTPN22;nc|ENSG00000134242|Q9Y2R2-3|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.7905883789062	2	550.790381	1099.56621	0.42308	0.00023303	0.8916	0.00049109	1.3147	0.00072411	550.7904829949861	28.93	0.53564	28.926	28.72	29.256	-0.0042572					57	18	4	0	0	0	0.017549	1	5132	5132		67.838	30.764	1	415460			26022	3762	14814	14815	32605	32605					0.02040841471944077
LPYDSKHQI	9	Unmodified	_LPYDSKHQI_					0	0	0		nc|ENSG00000134242|Q9Y2R2-6|PTPN22;nc|ENSG00000134242|Q9Y2R2-2|PTPN22;ENST00000484147.5_1_1:114375712-114414257:-|nuORF;nc|ENSG00000134242|Q9Y2R2-4|PTPN22;nc|ENSG00000134242|Q9Y2R2|PTPN22;ENSG00000134242|ENST00000359785|PTPN22;nc|ENSG00000134242|Q9Y2R2-3|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.7905883789062	2	550.790381	1099.56621	0.25875	0.00014252	0.70174	0.00038651	0.9605	0.00052903	550.7904824687798	28.984	0.6654	28.998	28.789	29.454	0.013475					56	23	3	0	0	0	0.0046246	1	5131	5131		89.401	33.898	1	376960			26023	3762	14814	14815	32606	32606					0.02040841471944077
LPYEALTQL	9	Unmodified	_LPYEALTQL_					0	0	0		nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7786865234375	2	524.289682	1046.56481	0.59487	0.00031189	-0.31903	-0.00016726	0.27584	0.00014462	524.2898613590183	72.409	0.56902	72.382	72.117	72.686	-0.027275					25	19	2	0	0	0	0.20626	1	18451	18451		22.736	2.2827	1	145730			26024	859	14815	14816	32607	32607					0.04339207383191024
LPYEKGRVT	9	Unmodified	_LPYEKGRVT_					0	0	0			REV__ENSG00000159339|ENST00000375448|PADI4	REV__ENSG00000159339|ENST00000375448|PADI4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8426513671875	2	531.800749	1061.58694	0.7537	0.00040082	0.56116	0.00029842	1.3149	0.00069924	532.3026262761446	44.855	0.079273	44.855	44.802	44.881	0					4	2	2	0	0	0	0.19839	1	9963	9963		21.747	2.4897	1	101530	+		26025	16847	14816	14817	32608	32608					0.05861431851622001
LPYELAINI	9	Unmodified	_LPYELAINI_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3007202148438	2	523.30005	1044.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.269	1	82.269	81.769	82.769	0								0	0	0	0.11932	1	21469	21469		41.84	11.203	1				26026	6833	14817	14818	32609	32609					0.06503797762820795
LPYELAINI	9	Unmodified	_LPYELAINI_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3007202148438	2	523.30005	1044.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.148	1	82.217	81.717	82.717	0.068993								0	0	0	0.17427	1	21422	21422		29.082	5.9332	1				26027	6833	14817	14818	32610	32610					0.06503797762820795
LPYELAINI	9	Unmodified	_LPYELAINI_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3031616210938	2	523.30005	1044.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.192	1	82.261	81.761	82.761	0.068993								0	0	0	0.19932	1	21436	21436		22.736	5.794	1				26028	6833	14817	14818	32611	32611					0.06503797762820795
LPYELAINI	9	Unmodified	_LPYELAINI_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3025512695312	2	523.30005	1044.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.378	1	82.452	81.952	82.952	0.073097								0	0	0	0.22933	1	21494	21494		13.042	0.80181	1				26029	6833	14817	14818	32612	32612					0.06503797762820795
LPYELAINI	9	Unmodified	_LPYELAINI_					0	0	0		nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	nc|ENSG00000174989|Q8N3Y1-2|FBXW8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3009033203125	2	523.30005	1044.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.28	1	82.259	81.759	82.759	-0.021576								0	0	0	0.11063	1	21454	21454		43.858	7.7313	1				26030	6833	14817	14818	32613	32613					0.06503797762820795
LPYEQSSLL	9	Unmodified	_LPYEQSSLL_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2792358398438	2	525.279315	1048.54408	0.54228	0.00028485	0.30611	0.00016079	0.84838	0.00044564	525.2789662387213	62.804	0.56738	62.804	62.501	63.068	0					49	20	3	0	0	0	0.11201	1	15532	15532		36.506	4.2007	1	651010			26031	3938	14818	14819	32614	32614					0.02174617003538515
LPYEQSSLL	9	Unmodified	_LPYEQSSLL_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.279541015625	2	525.279315	1048.54408	0.47342	0.00024868	0.55492	0.00029149	1.0283	0.00054016	525.2791740310386	62.777	0.55817	62.768	62.465	63.024	-0.0085564					48	20	3	0	0	0	0.13748	1	15497	15497		32.786	0.4802	1	748560			26032	3938	14818	14819	32615	32615					0.02174617003538515
LPYFIRNKL	9	Unmodified	_LPYFIRNKL_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3505249023438	2	582.350409	1162.68626	0.6275	0.00036542	0.022013	1.282E-05	0.64951	0.00037824	582.3503015017994	50.93	1.6132	50.93	49.843	51.456	0					142	59	3	0	0	0	0.037693	1	11708	11708		57.471	15.632	1	921560			26033	6334	14819	14820	32616	32616					0.1114287453635825
LPYFIRNKL	9	Unmodified	_LPYFIRNKL_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3505249023438	2	582.350409	1162.68626	0.62486	0.00036389	0.029442	1.7146E-05	0.6543	0.00038103	582.3502506081996	50.87	1.6498	50.917	49.878	51.528	0.046577					132	61	3	0	0	0	0.0041925	1	11697	11697		92.822	45.073	1	821510			26034	6334	14819	14820	32617	32617					0.1114287453635825
LPYFRATV	8	Unmodified	_LPYFRATV_					0	0	0		nc|ENSG00000243708|P0C869-7|PLA2G4B;nc|ENSG00000243708|P0C869-8|PLA2G4B;nc|ENSG00000243708|P0C869-6|PLA2G4B;ENST00000490848.5_1_15:42120322-42128845:+|nuORF;ENSG00000243789|ENST00000397299|JMJD7	nc|ENSG00000243708|P0C869-7|PLA2G4B	nc|ENSG00000243708|P0C869-7|PLA2G4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.59808349609375	2	483.774003	965.533452	0.28968	0.00014014	-0.43977	-0.00021275	-0.15009	-7.2609E-05	483.7738468290397	46.001	0.65623	46.001	45.746	46.402	0					37	23	2	0	0	0	0.32435	1	10252	10252		11.64	3.7301	1	381480			26035	12970	14820	14821	32618	32618					0.04930679139761196
LPYFRATV	8	Unmodified	_LPYFRATV_					0	0	0		nc|ENSG00000243708|P0C869-7|PLA2G4B;nc|ENSG00000243708|P0C869-8|PLA2G4B;nc|ENSG00000243708|P0C869-6|PLA2G4B;ENST00000490848.5_1_15:42120322-42128845:+|nuORF;ENSG00000243789|ENST00000397299|JMJD7	nc|ENSG00000243708|P0C869-7|PLA2G4B	nc|ENSG00000243708|P0C869-7|PLA2G4B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	483.774003	965.533452	0.0069691	3.3715E-06	0.28529	0.00013802	0.29226	0.00014139	483.7740665919901	45.875	0.44556	45.935	45.763	46.209	0.059834	-0.034312	0.00048117	NaN	11.64	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443520			26036	12970	14820	14821							0.04930679139761196
LPYFRATV	8	Unmodified	_LPYFRATV_					0	0	0		nc|ENSG00000243708|P0C869-7|PLA2G4B;nc|ENSG00000243708|P0C869-8|PLA2G4B;nc|ENSG00000243708|P0C869-6|PLA2G4B;ENST00000490848.5_1_15:42120322-42128845:+|nuORF;ENSG00000243789|ENST00000397299|JMJD7	nc|ENSG00000243708|P0C869-7|PLA2G4B	nc|ENSG00000243708|P0C869-7|PLA2G4B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	483.774003	965.533452	0.42489	0.00020555	-0.46549	-0.00022519	-0.040598	-1.964E-05	483.77384076154203	45.906	0.57658	45.971	45.703	46.279	0.065052	0.0020534	-0.00024525	NaN	11.64	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	407050			26037	12970	14820	14821							0.04930679139761196
LPYFSFAE	8	Unmodified	_LPYFSFAE_					0	0	0		ENSG00000111670|ENST00000299314|GNPTAB;GNPTAB|p.D706Tfs*4|1|0.21|ENSG00000111670|chr12:101764802-101764802|T/-|frameshift_variant	ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.8081970214844	2	487.236919	972.459284	0.19776	9.6354E-05	-0.19263	-9.3854E-05	0.0051295	2.4993E-06	487.23658680317186	21.854	0.57061	21.805	21.633	22.204	-0.049377					27	20	2	0	0	0	0.34297	1	3070	3070		6.3541	0.59368	1	74649			26038	2379	14821	14822	32619	32619					-0.028047087424283745
LPYGFIQEL	9	Unmodified	_LPYGFIQEL_					0	0	0		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2929077148438	2	540.292225	1078.5699	0.45475	0.0002457	1.2511	0.00067594	1.7058	0.00092163	540.2923338444508	81.472	1.5303	81.472	80.828	82.358	0					153	65	4	0	0	0	0.012929	3	21212	21212;21258;21326		74.929	13.572	1	1624000			26039	3528	14822	14823	32620;32621;32622	32620					0.033755112457811265
LPYGFIQEL	9	Unmodified	_LPYGFIQEL_					0	0	0		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2927856445312	2	540.292225	1078.5699	0.1811	9.7848E-05	1.7316	0.00093559	1.9127	0.0010334	540.2924888215385	81.437	1.102	81.506	81.003	82.105	0.068993					140	52	4	0	0	0	0.012929	3	21196	21196;21239;21341		74.929	22.661	1	1832200			26040	3528	14822	14823	32623;32624;32625	32623					0.033755112457811265
LPYGFIQEL	9	Unmodified	_LPYGFIQEL_					0	0	0		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.292724609375	2	540.292225	1078.5699	0.54868	0.00029645	1.4316	0.00077349	1.9803	0.0010699	540.2923069372541	81.559	1.0905	81.534	81.019	82.11	-0.02404					138	46	4	0	0	0	0.010453	3	21220	21220;21263;21342		78.728	26.46	1	2013700			26041	3528	14822	14823	32626;32627;32628	32626					0.033755112457811265
LPYGLERAI	9	Unmodified	_LPYGLERAI_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2984619140625	2	516.297842	1030.58113	0.98204	0.00050703	2.9667	0.0015317	3.9488	0.0020387	516.2977149883264	56.127	1.1995	56.127	55.46	56.66	0					133	43	5	0	0	0	0.0054984	2	13429	13429;13476		86.332	26.258	1	6837600			26042	309	14823	14824	32629;32630	32629					0.06706333339934645
LPYGLERAI	9	Unmodified	_LPYGLERAI_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2982788085938	2	516.297842	1030.58113	0.77166	0.00039841	0.35434	0.00018294	1.126	0.00058135	516.2979096467111	56.034	0.97668	56.104	55.501	56.477	0.070889					62	35	2	0	0	0	0.0054984	2	13402	13402;13451		86.332	26.258	1	5628600			26043	309	14823	14824	32631;32632	32631					0.06706333339934645
LPYGLERAI	9	Unmodified	_LPYGLERAI_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2982177734375	2	516.297842	1030.58113	0.84086	0.00043413	3.2905	0.0016989	4.1314	0.002133	516.2977697269386	56.287	1.6371	56.268	55.671	57.308	-0.019081					161	59	5	0	0	0	0.017549	1	13471	13471		67.838	11.79	1	7617400			26044	309	14823	14824	32633	32633					0.06706333339934645
LPYGLRYI	8	Unmodified	_LPYGLRYI_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7897644042969	2	497.789653	993.564752	0.52419	0.00026094	-0.37468	-0.00018651	0.1495	7.4422E-05	497.78950253213856	60.417	0.68325	60.512	60.211	60.894	0.095093					39	24	2	0	0	0	0.33245	1	14781	14781		19.439	11.529	1	1109800			26045	4664	14824	14825	32634	32634					0.06771252173848552
LPYGLRYI	8	Unmodified	_LPYGLRYI_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7898864746094	2	497.789653	993.564752	0.69999	0.00034845	0.22397	0.00011149	0.92396	0.00045994	497.7898318942052	60.555	0.5086	60.546	60.275	60.784	-0.0094528					40	18	3	0	0	0	0.065797	1	14812	14812		70.716	38.41	1	1181700			26046	4664	14824	14825	32635	32635					0.06771252173848552
LPYGQRLVI	9	Unmodified	_LPYGQRLVI_					0	0	0		ENST00000573850.1_1_16:27761050-27765577:+|nuORF;ENSG00000047578|ENST00000261588|KATNIP	ENST00000573850.1_1_16:27761050-27765577:+|nuORF	ENST00000573850.1_1_16:27761050-27765577:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.7510375976562	2	529.821484	1057.62842	0.87103	0.00046149	0.14327	7.5908E-05	1.0143	0.0005374	529.8211551204388	54.937	0.59508	54.937	54.651	55.246	0					48	21	3	0	0	0	0.10135	1	13091	13091		36.127	0	1	1036100			26047	633	14825	14826	32636	32636					0.10190612610927019
LPYGQRLVI	9	Unmodified	_LPYGQRLVI_					0	0	0		ENST00000573850.1_1_16:27761050-27765577:+|nuORF;ENSG00000047578|ENST00000261588|KATNIP	ENST00000573850.1_1_16:27761050-27765577:+|nuORF	ENST00000573850.1_1_16:27761050-27765577:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.7506713867188	2	529.821484	1057.62842	0.70044	0.00037111	-0.13269	-7.0304E-05	0.56774	0.0003008	529.8209936150239	54.878	0.54253	54.941	54.694	55.237	0.063202					43	19	3	0	0	0	0.090484	1	13069	13069		37.974	1.5079	1	1060400			26048	633	14825	14826	32637	32637					0.10190612610927019
LPYHAAII	8	Unmodified	_LPYHAAII_					0	0	0		L1MC1_dup2137|chr3:11202598-11203364:-|2.1876770070443263|0.3234029913481031|2.76|542.0|1|1|sense	L1MC1_dup2137|chr3:11202598-11203364:-|2.1876770070443263|0.3234029913481031|2.76|542.0|1|1|sense	L1MC1_dup2137|chr3:11202598-11203364:-|2.1876770070443263|0.3234029913481031|2.76|542.0|1|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.2633361816406	2	449.263271	896.511988	0.3027	0.00013599	0.21699	9.7486E-05	0.51969	0.00023348	449.26316680311	58.919	0.48807	58.904	58.656	59.144	-0.014267					41	16	3	0	0	0	0.20676	1	14324	14324		41.817	3.6661	1	413300			26049	12453	14826	14827	32638	32638					0.05959294111039526
LPYHEVYTI	9	Unmodified	_LPYHEVYTI_					0	0	0		ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	ENSG00000011028|ENST00000303375|MRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.7951049804688	2	567.795132	1133.57571	0.089137	5.0612E-05	-0.53901	-0.00030605	-0.44988	-0.00025544	567.7946979486345	52.35	0.84174	52.349	51.736	52.578	-0.00081253					71	30	4	0	0	0	0.027237	1	12271	12271		61.357	23.383	1	1201000			26050	432	14827	14828	32639	32639					0.01426609757481856
LPYHTLRTV	9	Unmodified	_LPYHTLRTV_					0	0	0		ENSG00000152207|ENST00000682523|CYSLTR2;chr13:48693510-48696526|356|21.37|0.98|4.45|+|ENST00000614739|CYSLTR2,CYSLTR2	ENSG00000152207|ENST00000682523|CYSLTR2	ENSG00000152207|ENST00000682523|CYSLTR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3156127929688	2	550.316566	1098.61858	-0.63686	-0.00035048	0.2171	0.00011947	-0.41977	-0.000231	550.3167109836722	34.619	0.78054	34.619	34.22	35	0					77	27	4	0	0	0	0.11397	1	6884	6884		49.933	17.147	1	1163900			26051	137	14828	14829	32640	32640					0.07321424605561333
LPYHTLRTV	9	Unmodified	_LPYHTLRTV_					0	0	0		ENSG00000152207|ENST00000682523|CYSLTR2;chr13:48693510-48696526|356|21.37|0.98|4.45|+|ENST00000614739|CYSLTR2,CYSLTR2	ENSG00000152207|ENST00000682523|CYSLTR2	ENSG00000152207|ENST00000682523|CYSLTR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3157348632812	2	550.316566	1098.61858	-0.66827	-0.00036776	0.26928	0.00014819	-0.39899	-0.00021957	550.3166019722196	34.505	0.80589	34.58	34.185	34.99	0.075306					82	28	4	0	0	0	0.066761	1	6841	6841		65.235	15.681	1	1233400			26052	137	14828	14829	32641	32641					0.07321424605561333
LPYHTLRTV	9	Unmodified	_LPYHTLRTV_					0	0	0		ENSG00000152207|ENST00000682523|CYSLTR2;chr13:48693510-48696526|356|21.37|0.98|4.45|+|ENST00000614739|CYSLTR2,CYSLTR2	ENSG00000152207|ENST00000682523|CYSLTR2	ENSG00000152207|ENST00000682523|CYSLTR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3153076171875	2	550.316566	1098.61858	-0.059825	-3.2923E-05	-0.44508	-0.00024493	-0.5049	-0.00027786	550.3162010130917	34.446	0.89302	34.523	34.082	34.975	0.077377					87	31	4	0	0	0	0.0045319	1	6833	6833		90.135	36.731	1	1055900			26053	137	14828	14829	32642	32642					0.07321424605561333
LPYHVAVLL	9	Unmodified	_LPYHVAVLL_					0	0	0		ENSG00000144476|ENST00000272928|ACKR3	ENSG00000144476|ENST00000272928|ACKR3	ENSG00000144476|ENST00000272928|ACKR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.8132934570312	2	512.813128	1023.6117	0.17964	9.2124E-05	-0.16986	-8.7109E-05	0.0097796	5.0151E-06	512.8131062144835	65.203	3.19	65.203	64.858	68.048	0					245	113	4	0	0	0	0.017826	1	16264	16264		67.413	0	1	6429400			26054	4589	14829	14830	32643	32643					0.10084111724984268
LPYIFPNI	8	Unmodified	_LPYIFPNI_					0	0	0		RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant;nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;RALGAPA1|p.E1734Rfs*4|1|0.27|ENSG00000174373|chr14:35627229-35627230|-/T|frameshift_variant;ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000554704.5_1_14:36176787-36221314:-|nuORF;ENST00000443361.1_1_9:108283251-108284913:+|nuORF;ENST00000554652.5_1_14:36147090-36221314:-|nuORF	RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant	RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7788391113281	2	488.778754	975.542954	0.48796	0.0002385	-0.0767	-3.7489E-05	0.41126	0.00020102	488.7786335645075	86.201	1.0364	86.201	85.846	86.883	0					94	40	4	0	0	0	0.20019	3	22701	22656;22701;22749		42.968	26.341	1	1265200			26055	6790	14830	14831	32644;32645;32646	32645					0.05420447425262864
LPYIFPNI	8	Unmodified	_LPYIFPNI_					0	0	0		RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant;nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;RALGAPA1|p.E1734Rfs*4|1|0.27|ENSG00000174373|chr14:35627229-35627230|-/T|frameshift_variant;ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000554704.5_1_14:36176787-36221314:-|nuORF;ENST00000443361.1_1_9:108283251-108284913:+|nuORF;ENST00000554652.5_1_14:36147090-36221314:-|nuORF	RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant	RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.77880859375	2	488.778754	975.542954	0.40501	0.00019796	-0.029969	-1.4648E-05	0.37504	0.00018331	488.7786708824334	86.129	0.81435	86.213	85.888	86.702	0.084251					86	31	4	0	0	0	0.20019	3	22660	22609;22660;22710		42.968	42.968	1	1153200			26056	6790	14830	14831	32647;32648;32649	32648					0.05420447425262864
LPYIFPNI	8	Unmodified	_LPYIFPNI_					0	0	0		RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant;nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;RALGAPA1|p.E1734Rfs*4|1|0.27|ENSG00000174373|chr14:35627229-35627230|-/T|frameshift_variant;ENSG00000174373|ENST00000680220|RALGAPA1;ENST00000554704.5_1_14:36176787-36221314:-|nuORF;ENST00000443361.1_1_9:108283251-108284913:+|nuORF;ENST00000554652.5_1_14:36147090-36221314:-|nuORF	RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant	RALGAPA1|p.T754Lfs*33|1|0.29|ENSG00000174373|chr14:35721694-35721694|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.77886962890625	2	488.778754	975.542954	0.4875	0.00023828	-0.11741	-5.7385E-05	0.37009	0.00018089	488.7786299474332	86.208	0.73663	86.199	85.899	86.636	-0.0090027					76	28	3	0	0	0	0.2705	3	22672	22628;22672;22728		34.187	13.316	1	1378200			26057	6790	14830	14831	32650;32651;32652	32651					0.05420447425262864
LPYIPIIIC	9	Unmodified	_LPYIPIIIC_					0	0	0			REV__ENSG00000154265|ENST00000392676|ABCA5	REV__ENSG00000154265|ENST00000392676|ABCA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.757568359375	2	522.811739	1043.60893	0.42227	0.00022077	3.172	0.0016583	3.5943	0.0018791	522.8134856983248	70.205	0.2791	70.271	70.133	70.412	0.066048					11	9	2	0	0	0	0.22431	1	17780	17780		20.871	3.9289	1	75012	+		26058	16656	14831	14832	32653	32653					0.08886520275859766
LPYKAGLSL	9	Unmodified	_LPYKAGLSL_					0	0	0		nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-5|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2896728515625	2	481.289485	960.564418	0.38483	0.00018521	2.6409	0.001271	3.0257	0.0014562	481.2894623183119	51.191	1.019	51.191	50.922	51.941	0					79	37	4	0	0	0	0.059987	1	11936	11936		70.332	7.7593	1	1605900			26059	7631	14832	14833	32654	32654					0.08255832453994572
LPYKAGLSL	9	Unmodified	_LPYKAGLSL_					0	0	0		nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-5|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2897644042969	2	481.289485	960.564418	0.40295	0.00019394	3.3322	0.0016037	3.7351	0.0017977	481.28940863975964	51.24	0.70355	51.25	50.937	51.641	0.0095634					78	26	5	0	0	0	0.075356	1	11926	11926		63.961	7.7835	1	1687500			26060	7631	14832	14833	32655	32655					0.08255832453994572
LPYKGGNTL	9	Unmodified	_LPYKGGNTL_					0	0	0		COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1;ENST00000432943.6_1_8:121160081-121289735:+|nuORF;nc|ENSG00000111799|Q99715-2|COL12A1;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant;nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7692565917969	2	481.768917	961.523281	0.56405	0.00027174	0.17096	8.2361E-05	0.735	0.0003541	481.7689122593227	34.032	0.66197	34.032	33.674	34.336	0					56	23	3	0	0	0	0.0079761	2	6686	6636;6686		82.529	23.85	1	1036700			26061	2389;195	14833	14834	32656;32657	32657					0.04098071414523474
LPYKGGNTL	9	Unmodified	_LPYKGGNTL_					0	0	0		COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1;ENST00000432943.6_1_8:121160081-121289735:+|nuORF;nc|ENSG00000111799|Q99715-2|COL12A1;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant;nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7693786621094	2	481.768917	961.523281	0.8087	0.00038961	-0.080437	-3.8752E-05	0.72826	0.00035086	481.7688048058083	33.857	0.69452	33.923	33.65	34.344	0.06636					60	24	3	0	0	0	0.0042138	2	6597	6597;6648		92.653	28.417	1	992160			26062	2389;195	14833	14834	32658;32659	32658					0.04098071414523474
LPYKGGNTL	9	Unmodified	_LPYKGGNTL_					0	0	0		COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1;ENST00000432943.6_1_8:121160081-121289735:+|nuORF;nc|ENSG00000111799|Q99715-2|COL12A1;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant;nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7692565917969	2	481.768917	961.523281	0.13569	6.5373E-05	0.63945	0.00030807	0.77515	0.00037344	481.7691068154181	33.82	0.58134	33.887	33.657	34.239	0.066704					53	20	3	0	0	0	0.037019	2	6585	6585;6639		57.722	11.701	1	1032600			26063	2389;195	14833	14834	32660;32661	32660					0.04098071414523474
LPYKQYNML	9	Oxidation (M)	_LPYKQYNM(Oxidation (M))L_		LPYKQYNM(1)L		LPYKQYNM(100)L	0	0	1		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.3638305664062	2	593.302267	1184.58998	0.17709	0.00010507	-0.56943	-0.00033785	-0.39234	-0.00023278	593.3024896683742	42.418	0.70869	42.418	42.221	42.93	0					65	25	3	0	0	0	0.0045119	1	9297	9297		103.75	71.443	1	694920			26064	2110	14834	14835	32662	32662		260			0.005069389141226566
LPYKQYNML	9	Oxidation (M)	_LPYKQYNM(Oxidation (M))L_		LPYKQYNM(1)L		LPYKQYNM(75)L	0	0	1		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.3637084960938	2	593.302267	1184.58998	0.50559	0.00029997	-1.2212	-0.00072454	-0.7156	-0.00042457	593.3023977997042	42.172	0.72123	42.257	41.983	42.704	0.085197					65	25	3	0	0	0	0.040595	1	9227	9227		74.929	54.475	1	689690			26065	2110	14834	14835	32663	32663		260			0.005069389141226566
LPYKQYNML	9	Oxidation (M)	_LPYKQYNM(Oxidation (M))L_		LPYKQYNM(1)L		LPYKQYNM(85)L	0	0	1		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.3639526367188	2	593.302267	1184.58998	0.52102	0.00030912	-0.85054	-0.00050463	-0.32952	-0.00019551	593.3023917495391	42.01	0.7618	42.101	41.929	42.691	0.091362					66	26	3	0	0	0	0.012082	1	9194	9194		85.272	59.873	1	693120			26066	2110	14834	14835	32664	32664		260			0.005069389141226566
LPYLALLTI	9	Unmodified	_LPYLALLTI_					0	0	0		nc|ENSG00000152942|O75943-3|RAD17;nc|ENSG00000152942|O75943-4|RAD17;ENSG00000152942|ENST00000354868|RAD17;nc|ENSG00000152942|O75943|RAD17	nc|ENSG00000152942|O75943-3|RAD17	nc|ENSG00000152942|O75943-3|RAD17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.82330322265625	2	508.823161	1015.63177	0.22113	0.00011252	0.016926	8.6125E-06	0.23805	0.00012113	508.8231558256179	99.664	0.36889	99.657	99.469	99.838	-0.006897					75	47	2	0	0	0	0.072844	1	26686	26686		44.407	6.433	1	171590			26067	5047	14835	14836	32665	32665					0.12457862664939512
LPYLALLTI	9	Unmodified	_LPYLALLTI_					0	0	0		nc|ENSG00000152942|O75943-3|RAD17;nc|ENSG00000152942|O75943-4|RAD17;ENSG00000152942|ENST00000354868|RAD17;nc|ENSG00000152942|O75943|RAD17	nc|ENSG00000152942|O75943-3|RAD17	nc|ENSG00000152942|O75943-3|RAD17	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	508.823161	1015.63177	-0.083765	-4.2622E-05	0.3934	0.00020017	0.30964	0.00015755	508.82328398180715	99.651	0.44752	99.651	99.405	99.852	0	0.01797	0.00015723	NaN	44.407	98	59	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75998			26068	5047	14835	14836							0.12457862664939512
LPYLALLTI	9	Unmodified	_LPYLALLTI_					0	0	0		nc|ENSG00000152942|O75943-3|RAD17;nc|ENSG00000152942|O75943-4|RAD17;ENSG00000152942|ENST00000354868|RAD17;nc|ENSG00000152942|O75943|RAD17	nc|ENSG00000152942|O75943-3|RAD17	nc|ENSG00000152942|O75943-3|RAD17	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	508.823161	1015.63177	0.063635	3.2379E-05	0.22388	0.00011391	0.28751	0.00014629	508.8233083080286	99.54	0.43366	99.591	99.372	99.806	0.050888	-0.042185	-1.5284E-05	NaN	44.407	96	57	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121430			26069	5047	14835	14836							0.12457862664939512
LPYLEHLNL	9	Unmodified	_LPYLEHLNL_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3126220703125	2	556.310949	1110.60735	0.30501	0.00016968	-1.0576	-0.00058836	-0.7526	-0.00041868	556.3107044733486	67.546	0.59194	67.546	67.25	67.842	0					44	20	3	0	0	0	0.0013683	1	16948	16948		118.07	57.994	1	590140			26070	2835	14836	14837	32666	32666					0.05646602511410492
LPYLEHLNL	9	Unmodified	_LPYLEHLNL_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3106079101562	2	556.310949	1110.60735	0.36632	0.00020379	-1.1455	-0.00063726	-0.77919	-0.00043347	556.31019822793	67.449	0.74265	67.527	67.183	67.925	0.078041					48	25	3	0	0	0	0.0013683	1	16896	16896		118.07	70.32	1	560890			26071	2835	14836	14837	32667	32667					0.05646602511410492
LPYLEHLNL	9	Unmodified	_LPYLEHLNL_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3096313476562	2	556.310949	1110.60735	0.15131	8.4174E-05	-0.64465	-0.00035862	-0.49334	-0.00027445	556.3105709833187	67.551	0.54849	67.535	67.262	67.811	-0.016296					43	18	3	0	0	0	0.00058103	1	16934	16934		129.77	73.595	1	603680			26072	2835	14836	14837	32668	32668					0.05646602511410492
LPYLFHVV	8	Unmodified	_LPYLFHVV_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.287353515625	2	494.286746	986.558939	0.24107	0.00011916	-0.55302	-0.00027335	-0.31195	-0.00015419	494.2863969592201	69.38	0.8056	69.38	69.037	69.843	0					53	28	3	0	0	0	0.06698	1	17520	17520		77.196	51.797	1	421810			26073	7899	14837	14838	32669	32669					0.06512153662174569
LPYLFHVV	8	Unmodified	_LPYLFHVV_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2865905761719	2	494.286746	986.558939	0.35103	0.00017351	-0.43776	-0.00021638	-0.086722	-4.2865E-05	494.28632994555744	69.361	0.83881	69.427	68.988	69.826	0.06604					61	29	3	0	0	0	0.027502	1	17522	17522		91.927	61.291	1	304090			26074	7899	14837	14838	32670	32670					0.06512153662174569
LPYLFHVV	8	Unmodified	_LPYLFHVV_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2868957519531	2	494.286746	986.558939	0.25875	0.0001279	-0.52036	-0.00025721	-0.26161	-0.00012931	494.28644892935444	69.404	1.0175	69.382	69	70.018	-0.022087					68	36	3	0	0	0	0.21989	1	17531	17531		52.334	33.077	1	321940			26075	7899	14837	14838	32671	32671					0.06512153662174569
LPYLHSNK	8	Unmodified	_LPYLHSNK_					0	0	0			REV__THSD7A|p.I1441Pfs*15|1|0.06|ENSG00000005108|chr7:11401885-11401886|-/GGTGAGGATCTAGGCTTTGG|frameshift_variant	REV__THSD7A|p.I1441Pfs*15|1|0.06|ENSG00000005108|chr7:11401885-11401886|-/GGTGAGGATCTAGGCTTTGG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7848815917969	2	486.269084	970.523616	-0.052413	-2.5487E-05	-4.289	-0.0020856	-4.3414	-0.0021111	486.26683217032945	14.651	0.33378	14.651	14.395	14.729	0					18	11	2	0	0	0	0.3671	1	790	790		23.148	5.0134	1	56621	+		26076	13340	14838	14839	32672	32672					0.0371749113437545
LPYLIDGAHKI	11	Unmodified	_LPYLIDGAHKI_					0	0	0		ENST00000490021.2_1_1:110230443-110251195:+|nuORF;ENST00000405166.1_1_6:111368073-111368568:-|nuORF;nc|ENSG00000134184|P09488-2|GSTM1;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000168765|ENST00000369836|GSTM4;ENSG00000134201|ENST00000256593|GSTM5;ENSG00000134184|ENST00000309851|GSTM1	ENST00000490021.2_1_1:110230443-110251195:+|nuORF	ENST00000490021.2_1_1:110230443-110251195:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.7610778808594	3	413.908046	1238.70231	0.35888	0.00014854	-0.24536	-0.00010155	0.11352	4.6987E-05	413.9079209345234	50.804	0.62902	50.804	50.569	51.198	0					59	22	4	0	0	0	0.24753	1	11845	11845		45.603	2.7673	1	849370			26077	3760	14839	14840	32673	32673					0.09250535982619112
LPYLLHLF	8	Unmodified	_LPYLLHLF_					0	0	0		ENST00000257724.7_1_7:114656804-114656849:+|nuORF	ENST00000257724.7_1_7:114656804-114656849:+|nuORF	ENST00000257724.7_1_7:114656804-114656849:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3008728027344	2	508.302396	1014.59024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.637	1	59.625	59.125	60.125	-0.011486								0	0	0	0.32888	1	14527	14527		24.21	0	1				26078	8939	14840	14841	32674	32674					0.08352726696273294
LPYLPSGESL	10	Unmodified	_LPYLPSGESL_					0	0	0		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2857055664062	2	538.28714	1074.55973	0.41026	0.00022084	-3.5658	-0.0019194	-3.1555	-0.0016986	538.2858031369921	69.884	0.75837	69.884	69.566	70.325	0					41	27	2	0	0	0	0.010678	1	17682	17682		81.89	53.403	1	539030			26079	3500	14841	14842	32675	32675					0.025429035205888795
LPYLPSGESL	10	Unmodified	_LPYLPSGESL_					0	0	0		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2860107421875	2	538.28714	1074.55973	0.31699	0.00017063	-3.6549	-0.0019674	-3.3379	-0.0017967	538.2858222214121	69.886	0.64001	69.952	69.692	70.332	0.066048					37	22	2	0	0	0	0.0075758	2	17667	17667;17726		85.272	59.873	1	461510			26080	3500	14841	14842	32676;32677	32676					0.025429035205888795
LPYLPSGESL	10	Unmodified	_LPYLPSGESL_					0	0	0		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2857666015625	2	538.28714	1074.55973	0.47848	0.00025756	-3.3123	-0.001783	-2.8339	-0.0015254	538.2857042256672	69.955	0.65845	69.933	69.673	70.332	-0.022087					44	23	3	0	0	0	0.0048568	2	17678	17678;17740		92.491	52.534	1	541730			26081	3500	14841	14842	32678;32679	32678					0.025429035205888795
LPYLSKRYSI	10	Unmodified	_LPYLSKRYSI_					0	0	0			REV__ENST00000395183.6_1_4:86699881-86700061:+|nuORF	REV__ENST00000395183.6_1_4:86699881-86700061:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.7608642578125	3	413.908046	1238.70231	0.58211	0.00024094	-0.45928	-0.0001901	0.12284	5.0843E-05	413.90783577550764	50.842	0.54063	50.889	50.656	51.196	0.046574					54	19	4	0	0	0	0.26213	1	11795	11795		36.395	8.1245	1	926580	+		26082	20627	14842	14843	32680	32680					0.09250535982619112
LPYLVPKL	8	Unmodified	_LPYLVPKL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.80523681640625	2	471.804771	941.59499	0.32038	0.00015116	0.25653	0.00012103	0.5769	0.00027219	471.8049485217725	64.305	2.0987	64.305	63.746	65.845	0					169	76	5	0	0	0	0.026049	6	15961	15961;16010;16053;16106;16148;16179		93.883	26.848	1	13399000			26083	1349	14843	14844	32681;32682;32683;32684;32685;32686	32681					0.1218561083902614
LPYLVPKL	8	Unmodified	_LPYLVPKL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.804931640625	2	471.804771	941.59499	0.32253	0.00015217	0.20335	9.5943E-05	0.52588	0.00024811	471.8049364030144	64.18	2.0783	64.273	63.765	65.843	0.09288					144	76	4	0	0	0	0.0083969	5	15973	15926;15973;16022;16076;16128		120.86	30.021	1	14647000			26084	1349	14843	14844	32687;32688;32689;32690;32691	32688					0.1218561083902614
LPYLVPKL	8	Unmodified	_LPYLVPKL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.80517578125	2	471.804771	941.59499	0.42725	0.00020158	0.1215	5.7323E-05	0.54875	0.0002589	471.8048665918229	64.294	2.1449	64.284	63.718	65.863	-0.0095367					128	78	2	0	0	0	0.016422	5	15959	15959;16007;16049;16096;16152		106.85	28.401	1	14096000			26085	1349	14843	14844	32692;32693;32694;32695;32696	32692					0.1218561083902614
LPYLVSNVI	9	Unmodified	_LPYLVSNVI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF;ENST00000531653.5_1_11:47445967-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.302734375	2	509.302593	1016.59063	0.47053	0.00023964	-0.33533	-0.00017079	0.1352	6.8857E-05	509.3024401428986	78.796	1.8644	78.854	78.499	80.363	0.058151					148	75	4	0	0	0	0.018449	1	20418	20418		66.457	26.499	1	4678300			26086	6011	14844	14845	32697	32697					0.08300101625468415
LPYLVSNVI	9	Unmodified	_LPYLVSNVI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF;ENST00000531653.5_1_11:47445967-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	509.302593	1016.59063	0.57233	0.00029149	-0.38608	-0.00019663	0.18625	9.4855E-05	509.3024156760167	78.869	1.4348	78.869	78.462	79.897	0	0.014285	4.9644E-06	NaN	66.457	133	57	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4946000			26087	6011	14844	14845							0.08300101625468415
LPYLVSNVI	9	Unmodified	_LPYLVSNVI_					0	0	0		ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF;ENST00000531653.5_1_11:47445967-47447800:-|nuORF	ENSG00000165916|ENST00000298852|PSMC3	ENSG00000165916|ENST00000298852|PSMC3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	509.302593	1016.59063	0.58584	0.00029837	-0.43522	-0.00022166	0.15062	7.6712E-05	509.3023885100569	78.872	1.322	78.842	78.48	79.802	-0.030434	-0.013221	-4.5092E-05	NaN	66.457	131	53	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4838900			26088	6011	14844	14845							0.08300101625468415
LPYNGVTV	8	Unmodified	_LPYNGVTV_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.737060546875	2	431.737086	861.459619	-0.018705	-8.0754E-06	0.089129	3.848E-05	0.070424	3.0405E-05	431.7370431979698	52.76	0.59764	52.76	52.523	53.121	0					44	21	4	0	0	0	0.25627	1	12421	12421		38.151	6.0342	1	811040			26089	2616	14845	14846	32698	32698					0.02334710977436316
LPYNGVTV	8	Unmodified	_LPYNGVTV_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.737060546875	2	431.737086	861.459619	0.17681	7.6335E-05	-0.14964	-6.4604E-05	0.02717	1.173E-05	431.7369459524833	52.756	0.49441	52.807	52.579	53.073	0.050575					44	17	3	0	0	0	0.26527	1	12406	12406		44.407	3.9584	1	786280			26090	2616	14845	14846	32699	32699					0.02334710977436316
LPYNNKDRDAL	11	Unmodified	_LPYNNKDRDAL_					0	0	0		ENST00000410000.2_1_2:70142417-70143353:+|nuORF;MXD1|p.M64Wfs*16|1|0.32|ENSG00000059728|chr2:69921750-69921750|A/-|frameshift_variant;nc|ENSG00000059728|Q05195-2|MXD1;ENSG00000059728|ENST00000264444|MXD1	ENST00000410000.2_1_2:70142417-70143353:+|nuORF	ENST00000410000.2_1_2:70142417-70143353:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2298889160156	3	440.229848	1317.66771	0.15597	6.8661E-05	-0.53987	-0.00023767	-0.3839	-0.00016901	440.22963155982825	30.425	0.62097	30.453	30.189	30.81	0.027946					65	21	5	0	0	0	0.38248	1	5606	5606		13.535	2.636	1	512810			26091	743	14846	14847	32700	32700					0.021586681038570532
LPYNNKDRDAL	11	Unmodified	_LPYNNKDRDAL_					0	0	0		ENST00000410000.2_1_2:70142417-70143353:+|nuORF;MXD1|p.M64Wfs*16|1|0.32|ENSG00000059728|chr2:69921750-69921750|A/-|frameshift_variant;nc|ENSG00000059728|Q05195-2|MXD1;ENSG00000059728|ENST00000264444|MXD1	ENST00000410000.2_1_2:70142417-70143353:+|nuORF	ENST00000410000.2_1_2:70142417-70143353:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	440.229848	1317.66771	0.17551	7.7266E-05	-0.45644	-0.00020094	-0.28092	-0.00012367	440.22968290258865	30.432	0.61577	30.432	30.194	30.81	0	-0.019027	-0.00014844	NaN	13.535	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	637270			26092	743	14846	14847							0.021586681038570532
LPYNNKDRDAL	11	Unmodified	_LPYNNKDRDAL_					0	0	0		ENST00000410000.2_1_2:70142417-70143353:+|nuORF;MXD1|p.M64Wfs*16|1|0.32|ENSG00000059728|chr2:69921750-69921750|A/-|frameshift_variant;nc|ENSG00000059728|Q05195-2|MXD1;ENSG00000059728|ENST00000264444|MXD1	ENST00000410000.2_1_2:70142417-70143353:+|nuORF	ENST00000410000.2_1_2:70142417-70143353:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	440.229848	1317.66771	-0.13804	-6.0769E-05	0.049267	2.1689E-05	-0.088771	-3.908E-05	440.22981672452283	30.44	0.56852	30.467	30.189	30.758	0.027157	0.016582	0.00051944	NaN	13.535	60	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	622710			26093	743	14846	14847							0.021586681038570532
LPYPAPEGI	9	Unmodified	_LPYPAPEGI_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7579345703125	2	478.758018	955.501483	0.24759	0.00011853	-0.23677	-0.00011336	0.01081	5.1756E-06	478.7578975571603	62.506	0.56282	62.506	62.213	62.776	0					36	20	2	0	0	0	0.072844	1	15441	15441		44.407	19.733	1	278500			26094	7361	14847	14848	32701	32701					0.02195266665944473
LPYPAPEGI	9	Unmodified	_LPYPAPEGI_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	478.758018	955.501483	0.31543	0.00015101	-0.27646	-0.00013236	0.038971	1.8658E-05	478.7579070395524	62.367	0.50962	62.464	62.228	62.738	0.096985	-0.018146	3.6569E-05	NaN	44.407	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224190			26095	7361	14847	14848							0.02195266665944473
LPYPAPEGI	9	Unmodified	_LPYPAPEGI_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	478.758018	955.501483	0.31962	0.00015302	-0.47997	-0.00022979	-0.16035	-7.6768E-05	478.75772063640426	62.485	0.58719	62.476	62.191	62.778	-0.0085564	-0.0056827	-0.00015829	NaN	44.407	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234300			26096	7361	14847	14848							0.02195266665944473
LPYPEAIFEL	10	Unmodified	_LPYPEAIFEL_					0	0	0		ENST00000531753.5_1_11:224237-233443:-|nuORF;ENST00000528702.5_1_11:226003-233443:-|nuORF;ENST00000529055.5_1_11:224232-236273:-|nuORF;nc|ENSG00000142082|Q9NTG7-2|SIRT3;ENSG00000142082|ENST00000382743|SIRT3	ENST00000531753.5_1_11:224237-233443:-|nuORF	ENST00000531753.5_1_11:224237-233443:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.3187866210938	2	596.31844	1190.62233	0.42378	0.00025271	0.70479	0.00042028	1.1286	0.00067299	596.3185786423741	92.116	0.84441	92.116	91.809	92.654	0					136	59	3	0	0	0	0.18562	4	24469	24428;24469;24509;24515		34.402	0	1	239790			26097	4422	14848	14849	32702;32703;32704;32705	32703					0.03464049588774287
LPYPEAIFEL	10	Unmodified	_LPYPEAIFEL_					0	0	0		ENST00000531753.5_1_11:224237-233443:-|nuORF;ENST00000528702.5_1_11:226003-233443:-|nuORF;ENST00000529055.5_1_11:224232-236273:-|nuORF;nc|ENSG00000142082|Q9NTG7-2|SIRT3;ENSG00000142082|ENST00000382743|SIRT3	ENST00000531753.5_1_11:224237-233443:-|nuORF	ENST00000531753.5_1_11:224237-233443:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.31884765625	2	596.31844	1190.62233	0.48471	0.00028904	0.49902	0.00029758	0.98373	0.00058662	596.318538428064	91.941	0.81435	92.031	91.748	92.563	0.090675					128	53	3	0	0	0	0.29092	3	24422	24375;24422;24465		21.537	0	1	285240			26098	4422	14848	14849	32706;32707;32708	32707					0.03464049588774287
LPYPEAIFEL	10	Unmodified	_LPYPEAIFEL_					0	0	0		ENST00000531753.5_1_11:224237-233443:-|nuORF;ENST00000528702.5_1_11:226003-233443:-|nuORF;ENST00000529055.5_1_11:224232-236273:-|nuORF;nc|ENSG00000142082|Q9NTG7-2|SIRT3;ENSG00000142082|ENST00000382743|SIRT3	ENST00000531753.5_1_11:224237-233443:-|nuORF	ENST00000531753.5_1_11:224237-233443:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.3187255859375	2	596.31844	1190.62233	0.57209	0.00034115	0.41121	0.00024521	0.9833	0.00058636	596.3185275125734	92.03	0.87202	92.031	91.717	92.589	0.00047302					116	56	3	0	0	0	0.24105	2	24452	24405;24452		27.629	0	1	317330			26099	4422	14848	14849	32709;32710	32710					0.03464049588774287
LPYPFASEI	9	Unmodified	_LPYPFASEI_					0	0	0		ENST00000506674.1_1_4:78804483-78828134:+|nuORF;ENSG00000169288|ENST00000315567|MRPL1	ENST00000506674.1_1_4:78804483-78828134:+|nuORF	ENST00000506674.1_1_4:78804483-78828134:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.317626953125	2	518.771126	1035.5277	0.70082	0.00036357	0.4525	0.00023474	1.1533	0.00059831	518.7714004200004	77.479	1.1315	77.479	77.09	78.221	0					94	41	3	0	0	0	0.025459	1	20023	20023		67.344	31.3	1	2059200			26100	6346	14849	14850	32711	32711					0.011355358374203206
LPYPFASEI	9	Unmodified	_LPYPFASEI_					0	0	0		ENST00000506674.1_1_4:78804483-78828134:+|nuORF;ENSG00000169288|ENST00000315567|MRPL1	ENST00000506674.1_1_4:78804483-78828134:+|nuORF	ENST00000506674.1_1_4:78804483-78828134:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.317626953125	2	518.771126	1035.5277	0.63528	0.00032957	0.42259	0.00021923	1.0579	0.00054879	518.7713871546581	77.446	0.9622	77.501	77.15	78.112	0.055412					82	34	3	0	0	0	0.037153	1	20009	20009		64.236	35.749	1	2031200			26101	6346	14849	14850	32712	32712					0.011355358374203206
LPYPFASEI	9	Unmodified	_LPYPFASEI_					0	0	0		ENST00000506674.1_1_4:78804483-78828134:+|nuORF;ENSG00000169288|ENST00000315567|MRPL1	ENST00000506674.1_1_4:78804483-78828134:+|nuORF	ENST00000506674.1_1_4:78804483-78828134:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.317626953125	2	518.771126	1035.5277	0.74529	0.00038663	0.31818	0.00016506	1.0635	0.00055169	518.7713016382077	77.547	1.1998	77.516	77.1	78.3	-0.031334					95	43	3	0	0	0	0.0040732	1	20023	20023		89.427	45.02	1	2367900			26102	6346	14849	14850	32713	32713					0.011355358374203206
LPYPIFAAI	9	Unmodified	_LPYPIFAAI_					0	0	0		nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C;ENST00000598457.5_1_19:48593588-48602975:-|nuORF;ENST00000599063.5_1_19:48601366-48609786:-|nuORF	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.79443359375	2	502.794404	1003.57425	0.37245	0.00018727	-0.12987	-6.53E-05	0.24258	0.00012197	502.794248002971	90.603	0.55383	90.603	90.355	90.909	0					104	43	3	0	0	0	0.11229	3	24010	24010;24052;24072		36.466	27.083	1	483260			26103	1988	14850	14851	32714;32715;32716	32714					0.07261020459361589
LPYPIFAAI	9	Unmodified	_LPYPIFAAI_					0	0	0		nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C;ENST00000598457.5_1_19:48593588-48602975:-|nuORF;ENST00000599063.5_1_19:48601366-48609786:-|nuORF	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7944641113281	2	502.794404	1003.57425	0.3679	0.00018498	-0.044237	-2.2242E-05	0.32366	0.00016274	502.794292382032	90.491	0.59487	90.582	90.27	90.865	0.090675					112	46	3	0	0	0	0.069231	1	23984	23984		45.75	45.75	1	457280			26104	1988	14850	14851	32717	32717					0.07261020459361589
LPYPIFAAI	9	Unmodified	_LPYPIFAAI_					0	0	0		nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C;ENST00000598457.5_1_19:48593588-48602975:-|nuORF;ENST00000599063.5_1_19:48601366-48609786:-|nuORF	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	nc|ENSG00000105499|Q9UP65-2|PLA2G4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.79437255859375	2	502.794404	1003.57425	0.46524	0.00023392	-0.24782	-0.0001246	0.21742	0.00010932	502.7942014235737	90.57	0.53316	90.57	90.339	90.872	0.00039673					97	40	3	0	0	0	0.069231	2	24030	23983;24030		45.75	36.367	1	418080			26105	1988	14850	14851	32718;32719	32719					0.07261020459361589
LPYPSSATL	9	Unmodified	_LPYPSSATL_					0	0	0		nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7554016113281	2	474.755475	947.496398	0.26696	0.00012674	0.074767	3.5496E-05	0.34173	0.00016224	474.7554086386417	57.277	0.59657	57.277	57.038	57.634	0					62	21	4	0	0	0	0.0036555	2	13787	13787;13834		97.075	19.09	1	1143800			26106	2309	14851	14852	32720;32721	32720					0.020549628033450063
LPYPSSATL	9	Unmodified	_LPYPSSATL_					0	0	0		nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7554931640625	2	474.755475	947.496398	0.25819	0.00012258	0.059624	2.8307E-05	0.31781	0.00015088	474.7554004684564	57.163	0.74773	57.242	56.959	57.707	0.078674					53	26	3	0	0	0	0.0061338	2	13794	13748;13794		85.357	18.013	1	1246200			26107	2309	14851	14852	32722;32723	32723					0.020549628033450063
LPYPSSATL	9	Unmodified	_LPYPSSATL_					0	0	0		nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.75555419921875	2	474.755475	947.496398	0.10295	4.8878E-05	0.36127	0.00017152	0.46422	0.00022039	474.75551673734367	57.321	0.70979	57.304	57.006	57.716	-0.0172					56	25	3	0	0	0	0.00207	2	13836	13784;13836		109.63	20.202	1	1306800			26108	2309	14851	14852	32724;32725	32725					0.020549628033450063
LPYPVKIKV	9	Unmodified	_LPYPVKIKV_					0	0	0		nc|ENSG00000074696|Q9P035-2|HACD3;ENSG00000074696|ENST00000261875|HACD3	nc|ENSG00000074696|Q9P035-2|HACD3	nc|ENSG00000074696|Q9P035-2|HACD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8443603515625	2	528.844428	1055.6743	0.75057	0.00039693	-0.27344	-0.00014461	0.47712	0.00025232	528.8439821646672	48.081	0.70545	48.081	47.877	48.582	0					51	24	3	0	0	0	0.006189	2	11009	10964;11009		85.272	39.251	1	1078100			26109	1025	14852	14853	32726;32727	32727					0.14869257793179713
LPYPVKIKV	9	Unmodified	_LPYPVKIKV_					0	0	0		nc|ENSG00000074696|Q9P035-2|HACD3;ENSG00000074696|ENST00000261875|HACD3	nc|ENSG00000074696|Q9P035-2|HACD3	nc|ENSG00000074696|Q9P035-2|HACD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8447875976562	2	528.844428	1055.6743	0.81064	0.0004287	-0.49576	-0.00026218	0.31489	0.00016653	528.8439396490277	48.082	0.71296	48.129	47.919	48.632	0.047523					62	26	3	0	0	0	0.019245	2	10964	10964;11010		65.235	27.261	1	1162100			26110	1025	14852	14853	32728;32729	32728					0.14869257793179713
LPYPVKIKV	9	Unmodified	_LPYPVKIKV_					0	0	0		nc|ENSG00000074696|Q9P035-2|HACD3;ENSG00000074696|ENST00000261875|HACD3	nc|ENSG00000074696|Q9P035-2|HACD3	nc|ENSG00000074696|Q9P035-2|HACD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8441162109375	2	528.844428	1055.6743	0.72423	0.00038301	-0.38391	-0.00020303	0.34032	0.00017997	528.8440201851436	48.141	0.6581	48.185	47.902	48.56	0.04332					52	24	3	0	0	0	0.012929	2	10956	10956;11006		74.929	36.955	1	1255500			26111	1025	14852	14853	32730;32731	32730					0.14869257793179713
LPYQIKKI	8	Unmodified	_LPYQIKKI_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.8211975097656	2	501.820953	1001.62735	0.64951	0.00032594	-0.27634	-0.00013868	0.37317	0.00018726	501.8208760563076	37.028	1.1793	37.028	36.616	37.795	0					124	41	5	0	0	0	0.079438	1	7592	7592		64.236	22.397	1	5071200			26112	3321	14853	14854	32732	32732					0.1266039824205336
LPYQIKKI	8	Unmodified	_LPYQIKKI_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.8212585449219	2	501.820953	1001.62735	0.43187	0.00021672	-0.07074	-3.5499E-05	0.36113	0.00018122	501.82097221810415	36.872	1.251	36.959	36.566	37.817	0.08741					126	45	5	0	0	0	0.057992	2	7538	7469;7538		74.423	25.249	1	4875500			26113	3321	14853	14854	32733;32734	32734					0.1266039824205336
LPYQIKKI	8	Unmodified	_LPYQIKKI_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.28033447265625	2	501.820953	1001.62735	0.63038	0.00031634	-0.24522	-0.00012306	0.38516	0.00019328	501.8209146121041	36.908	1.299	37.001	36.567	37.866	0.093018					134	47	5	0	0	0	0.23494	1	7599	7599		54.774	22.468	1	4887700			26114	3321	14853	14854	32735	32735					0.1266039824205336
LPYQPPAL	8	Unmodified	_LPYQPPAL_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7553405761719	2	449.755278	897.496004	0.10515	4.7291E-05	0.18637	8.382E-05	0.29152	0.00013111	449.7552145791034	61.834	1.0136	61.834	61.437	62.45	0					74	37	3	0	0	0	0.16192	1	15226	15226		49.669	6.7009	1	592310			26115	5991	14854	14855	32736	32736					0.04315587874123139
LPYQPPAL	8	Unmodified	_LPYQPPAL_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.7552185058594	2	449.755278	897.496004	-0.25421	-0.00011433	0.34663	0.0001559	0.092429	4.157E-05	449.7553867810946	61.744	0.63724	61.841	61.538	62.175	0.096989					52	22	3	0	0	0	0.35375	1	15175	15175		24.674	0	1	595880			26116	5991	14854	14855	32737	32737					0.04315587874123139
LPYQPPAL	8	Unmodified	_LPYQPPAL_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.75531005859375	2	449.755278	897.496004	-0.095599	-4.2996E-05	0.25752	0.00011582	0.16192	7.2826E-05	449.7552996725927	61.799	0.90201	61.791	61.4	62.302	-0.0085526					63	32	3	0	0	0	0.35375	1	15197	15197		24.674	0	1	642540			26117	5991	14854	14855	32738	32738					0.04315587874123139
LPYQVNQM	8	Oxidation (M)	_LPYQVNQM(Oxidation (M))_		LPYQVNQM(1)		LPYQVNQM(74)	0	0	1		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.74481201171875	2	504.744585	1007.47462	0.51983	0.00026238	0.24006	0.00012117	0.7599	0.00038355	504.74464206287496	40.399	0.69021	40.399	40.132	40.822	0					41	24	2	0	0	0	0.058048	1	8629	8629		74.396	74.396	1	446740			26118	1586	14855	14856	32739	32739		197			-0.02882165216874455
LPYQVNQM	8	Oxidation (M)	_LPYQVNQM(Oxidation (M))_		LPYQVNQM(1)		LPYQVNQM(71)	0	0	1		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7446594238281	2	504.744585	1007.47462	0.52776	0.00026638	0.16355	8.2553E-05	0.69131	0.00034894	504.74459323496666	40.267	0.51421	40.359	40.123	40.637	0.09267					32	18	2	0	0	0	0.065797	1	8586	8586		70.716	47.567	1	431120			26119	1586	14855	14856	32740	32740		197			-0.02882165216874455
LPYQVNQM	8	Oxidation (M)	_LPYQVNQM(Oxidation (M))_		LPYQVNQM(1)		LPYQVNQM(64)	0	0	1		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7447814941406	2	504.744585	1007.47462	0.46472	0.00023456	-0.070703	-3.5687E-05	0.39402	0.00019888	504.7445608290112	40.221	0.55135	40.32	40.09	40.641	0.099403					49	19	4	0	0	0	0.082568	1	8568	8568		63.563	40.414	1	437350			26120	1586	14855	14856	32741	32741		197			-0.02882165216874455
LPYQVVEV	8	Unmodified	_LPYQVVEV_					0	0	0		ENST00000277462.9_1_9:130887138-130890631:-|nuORF;ENST00000474124.5_1_9:130886092-130889945:-|nuORF;ENSG00000148334|ENST00000338961|PTGES2	ENST00000277462.9_1_9:130887138-130890631:-|nuORF	ENST00000277462.9_1_9:130887138-130890631:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.765869140625	2	473.765843	945.517133	0.20481	9.7031E-05	0.11284	5.346E-05	0.31765	0.00015049	473.76575092137773	63.474	1.2495	63.474	63.093	64.342	0					101	45	4	0	0	0	0.095164	2	15742	15742;15791		61.357	16.95	1	3285200			26121	4803	14856	14857	32742;32743	32742					0.04219553183008884
LPYQVVEV	8	Unmodified	_LPYQVVEV_					0	0	0		ENST00000277462.9_1_9:130887138-130890631:-|nuORF;ENST00000474124.5_1_9:130886092-130889945:-|nuORF;ENSG00000148334|ENST00000338961|PTGES2	ENST00000277462.9_1_9:130887138-130890631:-|nuORF	ENST00000277462.9_1_9:130887138-130890631:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7658386230469	2	473.765843	945.517133	0.33719	0.00015975	0.05542	2.6256E-05	0.39261	0.00018601	473.7657180742418	63.347	1.0251	63.443	63.148	64.173	0.095722					86	36	3	0	0	0	0.13277	3	15647	15647;15694;15749		54.774	16.622	1	2887600			26122	4803	14856	14857	32744;32745;32746	32744					0.04219553183008884
LPYQVVEV	8	Unmodified	_LPYQVVEV_					0	0	0		ENST00000277462.9_1_9:130887138-130890631:-|nuORF;ENST00000474124.5_1_9:130886092-130889945:-|nuORF;ENSG00000148334|ENST00000338961|PTGES2	ENST00000277462.9_1_9:130887138-130890631:-|nuORF	ENST00000277462.9_1_9:130887138-130890631:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.765869140625	2	473.765843	945.517133	0.36908	0.00017486	-0.015527	-7.3563E-06	0.35356	0.0001675	473.7656653009736	63.459	1.0492	63.45	63.104	64.153	-0.0085526					92	37	4	0	0	0	0.026838	3	15713	15669;15713;15766		92.822	29.259	1	3135300			26123	4803	14856	14857	32747;32748;32749	32748					0.04219553183008884
LPYRRPPSI	9	Unmodified	_LPYRRPPSI_					0	0	0		nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2	nc|ENSG00000138443|Q9NYB9-3|ABI2	nc|ENSG00000138443|Q9NYB9-3|ABI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.8237915039062	2	549.824558	1097.63456	-1.0016	-0.0005507	0.42432	0.0002333	-0.57727	-0.0003174	549.8245377006132	34.967	0.69901	34.967	34.528	35.227	0					52	24	3	0	0	0	0.11461	1	6932	6932		36.127	19.014	1	545060			26124	4152	14857	14858	32750	32750					0.08965130842466351
LPYRRPPSI	9	Unmodified	_LPYRRPPSI_					0	0	0		nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2	nc|ENSG00000138443|Q9NYB9-3|ABI2	nc|ENSG00000138443|Q9NYB9-3|ABI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.8236694335938	2	549.824558	1097.63456	-1.0525	-0.00057867	0.54429	0.00029927	-0.50817	-0.00027941	549.8246310575392	34.837	0.54662	34.913	34.604	35.151	0.075306					48	19	3	0	0	0	0.07432	1	6893	6893		43.858	24.601	1	508570			26125	4152	14857	14858	32751	32751					0.08965130842466351
LPYRRPPSI	9	Unmodified	_LPYRRPPSI_					0	0	0		nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2	nc|ENSG00000138443|Q9NYB9-3|ABI2	nc|ENSG00000138443|Q9NYB9-3|ABI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.823974609375	2	549.824558	1097.63456	-0.48241	-0.00026524	0.25857	0.00014217	-0.22385	-0.00012308	549.8243410519121	34.801	0.60754	34.878	34.533	35.141	0.077377					51	21	4	0	0	0	0.11461	1	6872	6872		36.127	16.87	1	550860			26126	4152	14857	14858	32752	32752					0.08965130842466351
LPYRWQMLI	9	Oxidation (M)	_LPYRWQM(Oxidation (M))LI_		LPYRWQM(1)LI		LPYRWQM(68)LI	0	0	1		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.3336791992188	2	618.333901	1234.65325	0.24181	0.00014952	-0.76509	-0.00047308	-0.52328	-0.00032356	618.3333488622804	68.177	0.75949	68.158	67.724	68.484	-0.01915					42	26	2	0	0	0	0.017391	1	17163	17163		68.081	33.978	1	245980			26127	2038	14858	14859	32753	32753		252			0.04530924422010685
LPYSHLLQ	8	Unmodified	_LPYSHLLQ_					0	0	0		ENST00000407096.6_1_1:223305936-223316570:-|nuORF	ENST00000407096.6_1_1:223305936-223316570:-|nuORF	ENST00000407096.6_1_1:223305936-223316570:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2613525390625	2	485.77146	969.528367	0.14176	6.8863E-05	0.35797	0.00017389	0.49973	0.00024275	485.77133245951546	29.012	0.77154	29.025	28.619	29.39	0.013474					41	27	2	0	0	0	0.34319	1	5231	5231		5.7604	0.52976	1	160950			26128	10229	14859	14860	32754	32754					0.042383752771456784
LPYSIRVLL	9	Unmodified	_LPYSIRVLL_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.3388061523438	2	537.33951	1072.66447	0.50849	0.00027323	-0.89511	-0.00048098	-0.38662	-0.00020774	537.3388114745464	71.073	0.58407	71.073	70.847	71.431	0					42	20	3	0	0	0	0.0046246	2	18082	18029;18082		89.401	57.095	1	1073000			26129	3973	14860	14861	32755;32756	32756					0.1310406978782339
LPYSIRVLL	9	Unmodified	_LPYSIRVLL_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.339111328125	2	537.33951	1072.66447	0.38364	0.00020614	-0.89357	-0.00048015	-0.50994	-0.00027401	537.3389398333487	71.043	0.52705	71.104	70.88	71.407	0.060783					40	18	3	0	0	0	0.011693	2	18008	18008;18067		76.825	46.188	1	1039700			26130	3973	14860	14861	32757;32758	32757					0.1310406978782339
LPYSIRVLL	9	Unmodified	_LPYSIRVLL_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	537.33951	1072.66447	0.58876	0.00031637	-1.0823	-0.00058154	-0.49349	-0.00026517	537.3387717135543	71.165	0.5732	71.14	70.881	71.454	-0.024864	0.03425	-0.00011971	NaN	89.401	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1297000			26131	3973	14860	14861							0.1310406978782339
LPYSNITV	8	Unmodified	_LPYSNITV_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7501525878906	2	453.750193	905.485833	0.11243	5.1015E-05	-0.16476	-7.4759E-05	-0.052329	-2.3744E-05	453.7500326178882	59.339	0.58138	59.431	59.156	59.737	0.091301					35	20	2	0	0	0	0.30157	1	14449	14449		30.637	0	1	343880			26132	818	14861	14862	32759	32759					0.02930980148892104
LPYSNITV	8	Unmodified	_LPYSNITV_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	453.750193	905.485833	0.013197	5.9883E-06	0.092902	4.2154E-05	0.1061	4.8143E-05	453.75016402435244	59.56	0.48773	59.56	59.215	59.702	0	0.068191	0.00013214	NaN	30.637	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290000			26133	818	14861	14862							0.02930980148892104
LPYSPRVLV	9	Unmodified	_LPYSPRVLV_					0	0	0		nc|ENSG00000261832|Q13286-5|CLN3;ENST00000564574.5_2_16:28493646-28503072:-|nuORF;nc|ENSG00000261832|Q13286-4|CLN3;ENST00000566083.6_2_16:28493835-28503080:-|nuORF;nc|ENSG00000261832|Q13286-2|CLN3;nc|ENSG00000261832|Q13286-7|CLN3;nc|ENSG00000261832|Q13286-3|CLN3;ENSG00000188603|ENST00000636147|CLN3	nc|ENSG00000261832|Q13286-5|CLN3	nc|ENSG00000261832|Q13286-5|CLN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3163452148438	2	522.316035	1042.61752	0.84751	0.00044267	-0.22774	-0.00011895	0.61977	0.00032371	522.3157252204659	54.845	0.72403	54.845	54.496	55.221	0					75	26	4	0	0	0	0.0037772	2	13067	13018;13067		96.111	43.843	1	2835800			26134	7760	14862	14863	32760;32761	32761					0.09791210236653569
LPYSPRVLV	9	Unmodified	_LPYSPRVLV_					0	0	0		nc|ENSG00000261832|Q13286-5|CLN3;ENST00000564574.5_2_16:28493646-28503072:-|nuORF;nc|ENSG00000261832|Q13286-4|CLN3;ENST00000566083.6_2_16:28493835-28503080:-|nuORF;nc|ENSG00000261832|Q13286-2|CLN3;nc|ENSG00000261832|Q13286-7|CLN3;nc|ENSG00000261832|Q13286-3|CLN3;ENSG00000188603|ENST00000636147|CLN3	nc|ENSG00000261832|Q13286-5|CLN3	nc|ENSG00000261832|Q13286-5|CLN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.3162231445312	2	522.316035	1042.61752	0.71426	0.00037307	-0.22306	-0.00011651	0.4912	0.00025656	522.3157085360319	54.768	0.93153	54.831	54.459	55.39	0.063206					86	34	4	0	0	0	0.003317	2	13045	12999;13045		99.755	47.487	1	3590200			26135	7760	14862	14863	32762;32763	32763					0.09791210236653569
LPYSPRVLV	9	Unmodified	_LPYSPRVLV_					0	0	0		nc|ENSG00000261832|Q13286-5|CLN3;ENST00000564574.5_2_16:28493646-28503072:-|nuORF;nc|ENSG00000261832|Q13286-4|CLN3;ENST00000566083.6_2_16:28493835-28503080:-|nuORF;nc|ENSG00000261832|Q13286-2|CLN3;nc|ENSG00000261832|Q13286-7|CLN3;nc|ENSG00000261832|Q13286-3|CLN3;ENSG00000188603|ENST00000636147|CLN3	nc|ENSG00000261832|Q13286-5|CLN3	nc|ENSG00000261832|Q13286-5|CLN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3162841796875	2	522.316035	1042.61752	0.78362	0.0004093	-0.35187	-0.00018379	0.43175	0.00022551	522.3157139442596	54.893	0.80252	54.877	54.49	55.293	-0.015923					84	29	4	0	0	0	0.0079761	2	13035	13035;13082		82.529	38.671	1	3326300			26136	7760	14862	14863	32764;32765	32764					0.09791210236653569
LPYSQISGL	9	Unmodified	_LPYSQISGL_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000583631.1_1_17:26890919-26898285:-|nuORF;ENST00000577594.5_1_17:26890803-26898514:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2691650390625	2	489.26875	976.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.644	1	63.644	63.144	64.144	0								0	0	0	0.18639	1	15774	15774		26.268	0.86883	1				26137	1296	14863	14864	32766	32766					0.03374651694673503
LPYSRPIV	8	Unmodified	_LPYSRPIV_					0	0	0		ENSG00000204195|ENST00000374521|AWAT1	ENSG00000204195|ENST00000374521|AWAT1	ENSG00000204195|ENST00000374521|AWAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7817077636719	2	472.781828	943.549102	0.29081	0.00013749	-0.010573	-4.9986E-06	0.28023	0.00013249	472.7817095469314	48.404	0.69648	48.404	48.077	48.773	0					40	24	2	0	0	0	0.18275	2	11037	11037;11083		46.021	4.1813	1	2795500			26138	8204	14864	14865	32767;32768	32767					0.07506965656796183
LPYSRPIV	8	Unmodified	_LPYSRPIV_					0	0	0		ENSG00000204195|ENST00000374521|AWAT1	ENSG00000204195|ENST00000374521|AWAT1	ENSG00000204195|ENST00000374521|AWAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7818603515625	2	472.781828	943.549102	0.56623	0.0002677	-0.24703	-0.00011679	0.31919	0.00015091	472.781655530319	48.366	0.80715	48.413	48.101	48.908	0.047523					50	29	2	0	0	0	0.18275	4	11031	11024;11031;11077;11127		46.021	4.1813	1	3148900			26139	8204	14864	14865	32769;32770;32771;32772	32770					0.07506965656796183
LPYSRPIV	8	Unmodified	_LPYSRPIV_					0	0	0		ENSG00000204195|ENST00000374521|AWAT1	ENSG00000204195|ENST00000374521|AWAT1	ENSG00000204195|ENST00000374521|AWAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.781982421875	2	472.781828	943.549102	0.44681	0.00021124	-0.059603	-2.8179E-05	0.38721	0.00018306	472.7817020893834	48.342	0.77449	48.385	48.065	48.839	0.04332					44	28	2	0	0	0	0.18275	2	11018	11018;11068		46.021	4.1813	1	2980300			26140	8204	14864	14865	32773;32774	32773					0.07506965656796183
LPYSVTLI	8	Unmodified	_LPYSVTLI_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2;ENSG00000182541|ENST00000331728|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.2707214355469	2	453.270761	904.52697	0.38871	0.00017619	-0.1981	-8.9792E-05	0.19061	8.6397E-05	453.2705503104769	74.938	1.1665	74.938	74.654	75.821	0					109	41	4	0	0	0	0.026049	2	19242	19194;19242		93.883	26.848	1	3377500			26141	12873	14865	14866	32775;32776	32776					0.07088741188397307
LPYSVTLI	8	Unmodified	_LPYSVTLI_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2;ENSG00000182541|ENST00000331728|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2707214355469	2	453.270761	904.52697	0.19635	8.8998E-05	0.018971	8.5988E-06	0.21532	9.7597E-05	453.27063950847423	74.893	1.0885	74.946	74.64	75.729	0.052368					99	39	4	0	0	0	0.033363	1	19212	19212		86.121	26.326	1	3023600			26142	12873	14865	14866	32777	32777					0.07088741188397307
LPYSVTLI	8	Unmodified	_LPYSVTLI_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2;ENSG00000182541|ENST00000331728|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.270751953125	2	453.270761	904.52697	0.46561	0.00021105	-0.27113	-0.0001229	0.19447	8.815E-05	453.27053216584613	74.997	1.1604	74.966	74.642	75.803	-0.031487					107	42	4	0	0	0	0.042326	2	19243	19191;19243		81.864	25.323	1	3292200			26143	12873	14865	14866	32778;32779	32779					0.07088741188397307
LPYTGAETRI	10	Unmodified	_LPYTGAETRI_					0	0	0		nc|ENSG00000115318|P58215-2|LOXL3;nc|ENSG00000115318|P58215-3|LOXL3;ENSG00000115318|ENST00000264094|LOXL3	nc|ENSG00000115318|P58215-2|LOXL3	nc|ENSG00000115318|P58215-2|LOXL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8038330078125	2	560.803488	1119.59242	0.24034	0.00013478	0.033802	1.8956E-05	0.27414	0.00015374	560.8034470805603	43.767	0.64909	43.767	43.441	44.09	0					64	23	4	0	0	0	0.0027997	2	9649	9604;9649		104.48	60.503	1	2488300			26144	2634	14866	14867	32780;32781	32781					0.03741110643431966
LPYTGAETRI	10	Unmodified	_LPYTGAETRI_					0	0	0		nc|ENSG00000115318|P58215-2|LOXL3;nc|ENSG00000115318|P58215-3|LOXL3;ENSG00000115318|ENST00000264094|LOXL3	nc|ENSG00000115318|P58215-2|LOXL3	nc|ENSG00000115318|P58215-2|LOXL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8035888671875	2	560.803488	1119.59242	0.44545	0.00024981	-0.58415	-0.00032759	-0.1387	-7.7785E-05	560.8032013993824	43.52	0.79032	43.597	43.234	44.024	0.077518					71	28	4	0	0	0	0.12729	1	9541	9541		69.338	29.389	1	2339400			26145	2634	14866	14867	32782	32782					0.03741110643431966
LPYTGAETRI	10	Unmodified	_LPYTGAETRI_					0	0	0		nc|ENSG00000115318|P58215-2|LOXL3;nc|ENSG00000115318|P58215-3|LOXL3;ENSG00000115318|ENST00000264094|LOXL3	nc|ENSG00000115318|P58215-2|LOXL3	nc|ENSG00000115318|P58215-2|LOXL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8035278320312	2	560.803488	1119.59242	0.35497	0.00019907	-0.23829	-0.00013364	0.11668	6.5434E-05	560.803305869418	43.495	0.69366	43.579	43.327	44.02	0.083996					46	25	2	0	0	0	0.012632	1	9579	9579		104.48	60.503	1	2499700			26146	2634	14866	14867	32783	32783					0.03741110643431966
LPYTQSVQI	9	Unmodified	_LPYTQSVQI_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7874145507812	2	524.787307	1047.56006	0.38203	0.00020048	-0.0083607	-4.3876E-06	0.37367	0.0001961	524.7872753077771	59.381	1.0099	59.381	59.055	60.065	0					95	35	4	0	0	0	0.0028542	3	14469	14419;14469;14517		103.42	24.691	1	3621700			26147	2983	14867	14868	32784;32785;32786	32785					0.038183232404207956
LPYTQSVQI	9	Unmodified	_LPYTQSVQI_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7874755859375	2	524.787307	1047.56006	0.43464	0.0002281	-0.12877	-6.7576E-05	0.30587	0.00016052	524.7872123861465	59.218	0.77978	59.309	59.015	59.795	0.091305					82	27	4	0	0	0	0.00078391	3	14419	14369;14419;14472		125.53	36.575	1	3917200			26148	2983	14867	14868	32787;32788;32789	32788					0.038183232404207956
LPYTQSVQI	9	Unmodified	_LPYTQSVQI_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7877197265625	2	524.787307	1047.56006	0.64635	0.0003392	-0.32907	-0.00017269	0.31728	0.0001665	524.7871536585935	59.333	0.98819	59.319	58.977	59.965	-0.014267					99	34	5	0	0	0	0.0013683	3	14399	14399;14447;14493		118.07	39.34	1	4188800			26149	2983	14867	14868	32790;32791;32792	32790					0.038183232404207956
LPYTVTTAI	9	Unmodified	_LPYTVTTAI_					0	0	0			REV__ENSG00000100372|ENST00000435456|SLC25A17	REV__ENSG00000100372|ENST00000435456|SLC25A17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.7792053222656	2	489.778951	977.543348	0.39997	0.0001959	-0.08706	-4.264E-05	0.31291	0.00015326	489.77888189755737	72.233	1.2536	72.233	71.937	73.191	0					95	45	3	0	0	0	0.055495	1	18527	18527		50.855	10.898	1	2041400	+		26150	14189	14868	14869	32793	32793					0.05367822354457985
LPYTVTTAI	9	Unmodified	_LPYTVTTAI_					0	0	0			REV__ENSG00000100372|ENST00000435456|SLC25A17	REV__ENSG00000100372|ENST00000435456|SLC25A17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.77899169921875	2	489.778951	977.543348	0.47305	0.00023169	-0.10349	-5.0688E-05	0.36955	0.000181	489.7788446316271	72.183	1.1725	72.24	71.922	73.094	0.056572					91	42	3	0	0	0	0.062246	1	18485	18485		48.346	2.3249	1	1960800	+		26151	14189	14868	14869	32794	32794					0.05367822354457985
LPYVGMVTI	9	Oxidation (M)	_LPYVGM(Oxidation (M))VTI_		LPYVGM(1)VTI		LPYVGM(120)VTI	0	0	1		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7754821777344	2	504.775354	1007.53615	0.3984	0.0002011	-0.026334	-1.3293E-05	0.37207	0.00018781	504.7753609744141	72.156	1.5232	72.156	71.582	73.105	0					207	55	5	0	0	0	0.00097449	2	18353	18353;18404		123.1	72.241	1	6941000			26152	6096	14869	14870	32795;32796	32795		713			0.03268766482415231
LPYVGMVTI	9	Oxidation (M)	_LPYVGM(Oxidation (M))VTI_		LPYVGM(1)VTI		LPYVGM(120)VTI	0	0	1		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.775634765625	2	504.775354	1007.53615	0.43767	0.00022093	-0.054143	-2.733E-05	0.38353	0.0001936	504.7753475681998	72.167	2.0398	72.224	71.568	73.608	0.056572					217	74	4	0	0	0	0.00097449	3	18363	18322;18363;18410		123.1	74.75	1	6945600			26153	6096	14869	14870	32797;32798;32799	32798		713			0.03268766482415231
LPYVGMVTI	9	Oxidation (M)	_LPYVGM(Oxidation (M))VTI_		LPYVGM(1)VTI		LPYVGM(120)VTI	0	0	1		ENSG00000166562|ENST00000587834|SEC11C;ENST00000591406.1_1_18:56822908-56825914:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.77569580078125	2	504.775354	1007.53615	0.41782	0.0002109	-0.052463	-2.6482E-05	0.36535	0.00018442	504.77533387817397	72.212	2.022	72.185	71.537	73.559	-0.027275					277	72	5	0	0	0	0.00097449	3	18424	18335;18384;18424		123.1	74.986	1	7459700			26154	6096	14869	14870	32800;32801;32802	32802		713			0.03268766482415231
LPYVGTSV	8	Unmodified	_LPYVGTSV_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.7395935058594	2	418.231636	834.448719	0.53025	0.00022177	-0.15691	-6.5623E-05	0.37334	0.00015614	418.23145860777834	55.988	0.85994	55.988	55.431	56.291	0					60	30	3	0	0	0	0.25627	1	13380	13380		38.151	24.643	1	1112900			26155	2835	14870	14871	32803	32803					0.02487308603144811
LPYVGTSV	8	Unmodified	_LPYVGTSV_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.7396240234375	2	418.231636	834.448719	0.55675	0.00023285	-0.19709	-8.2429E-05	0.35966	0.00015042	418.23148302517484	55.937	0.82131	56.007	55.473	56.294	0.070885					50	29	2	0	0	0	0.25627	1	13373	13373		46.921	28.786	1	1400800			26156	2835	14870	14871	32804	32804					0.02487308603144811
LPYVGTSV	8	Unmodified	_LPYVGTSV_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.7395935058594	2	418.231636	834.448719	0.56298	0.00023546	-0.32422	-0.0001356	0.23876	9.9858E-05	418.2314871042055	56.015	0.86045	55.996	55.379	56.239	-0.019081					60	31	3	0	0	0	0.15131	1	13416	13416		56.541	30.2	1	950480			26157	2835	14870	14871	32805	32805					0.02487308603144811
LPYVLTDI	8	Unmodified	_LPYVLTDI_					0	0	0		ENST00000510943.3_1_5:1078727-1081764:-|nuORF;ENSG00000113504|ENST00000264930|SLC12A7	ENST00000510943.3_1_5:1078727-1081764:-|nuORF	ENST00000510943.3_1_5:1078727-1081764:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2686462402344	2	467.268219	932.521884	0.2816	0.00013158	0.93982	0.00043915	1.2214	0.00057073	467.26855860829977	77.401	0.65738	77.401	77.09	77.747	0					38	23	2	0	0	0	0.033363	1	20000	20000		86.121	19.086	1	567450			26158	2507	14871	14872	32806	32806					0.05292437325749688
LPYVLTDI	8	Unmodified	_LPYVLTDI_					0	0	0		ENST00000510943.3_1_5:1078727-1081764:-|nuORF;ENSG00000113504|ENST00000264930|SLC12A7	ENST00000510943.3_1_5:1078727-1081764:-|nuORF	ENST00000510943.3_1_5:1078727-1081764:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2685852050781	2	467.268219	932.521884	0.30256	0.00014138	0.68432	0.00031976	0.98688	0.00046114	467.2686777524442	77.365	0.55914	77.42	77.12	77.679	0.055412					43	19	3	0	0	0	0.30517	1	19996	19996		30.225	7.0764	1	566200			26159	2507	14871	14872	32807	32807					0.05292437325749688
LPYVLTDI	8	Unmodified	_LPYVLTDI_					0	0	0		ENST00000510943.3_1_5:1078727-1081764:-|nuORF;ENSG00000113504|ENST00000264930|SLC12A7	ENST00000510943.3_1_5:1078727-1081764:-|nuORF	ENST00000510943.3_1_5:1078727-1081764:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2685852050781	2	467.268219	932.521884	0.59843	0.00027963	0.44175	0.00020642	1.0402	0.00048604	467.2685403444428	77.41	0.57781	77.378	77.1	77.678	-0.031334					47	20	3	0	0	0	0.033363	1	19997	19997		86.121	19.086	1	480110			26160	2507	14871	14872	32808	32808					0.05292437325749688
LPYVLWLL	8	Unmodified	_LPYVLWLL_					0	0	0		ENSG00000138031|ENST00000679454|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	ENSG00000138031|ENST00000679454|ADCY3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7818908691406	2	508.812596	1015.61064	0.70963	0.00036107	0.049221	2.5044E-05	0.75885	0.00038611	508.8126358110759	33.911	0.40184	33.911	33.646	34.048	0					15	14	2	0	0	0	0.34297	1	6600	6600		6.3541	0	1	75632			26161	4107	14872	14873	32809	32809					0.10345897356091882
LPYVSNIL	8	Unmodified	_LPYVSNIL_					0	0	0		nc|ENSG00000179456|Q99592|ZBTB18;ENSG00000179456|ENST00000358704|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.20343017578125	2	459.768386	917.522219	0.31731	0.00014589	0.73276	0.0003369	1.0501	0.00048279	459.7685585959651	47.772	0.4454	47.772	47.352	47.797	0					19	15	2	0	0	0	0.26342	1	10870	10870		47.749	5.9091	1	276250			26162	7126	14873	14874	32810	32810					0.06015857045622397
LPYVSVTSL	9	Unmodified	_LPYVSVTSL_					0	0	0		ENST00000440760.5_1_2:27594325-27599583:+|nuORF;nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.7790832519531	2	489.778951	977.543348	0.39997	0.0001959	-0.08706	-4.264E-05	0.31291	0.00015326	489.77888189755737	72.233	1.2536	72.233	71.937	73.191	0					95	45	3	0	0	0	0.0017972	2	18370	18370;18412		112.59	38.17	1	2041400			26163	2622	14874	14875	32811;32812	32811					0.053678223544807224
LPYVSVTSL	9	Unmodified	_LPYVSVTSL_					0	0	0		ENST00000440760.5_1_2:27594325-27599583:+|nuORF;nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.77899169921875	2	489.778951	977.543348	0.47305	0.00023169	-0.10349	-5.0688E-05	0.36955	0.000181	489.7788446316271	72.183	1.1725	72.24	71.922	73.094	0.056572					91	42	3	0	0	0	0.0017972	2	18350	18350;18397		112.59	38.17	1	1960800			26164	2622	14874	14875	32813;32814	32813					0.053678223544807224
LPYVSVTSL	9	Unmodified	_LPYVSVTSL_					0	0	0		ENST00000440760.5_1_2:27594325-27599583:+|nuORF;nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	ENST00000440760.5_1_2:27594325-27599583:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.7791748046875	2	489.778951	977.543348	0.42537	0.00020834	-0.094849	-4.6455E-05	0.33052	0.00016188	489.7788837251332	72.251	1.4758	72.224	71.925	73.401	-0.027275					106	52	3	0	0	0	0.0017972	2	18426	18377;18426		112.59	38.17	1	1990000			26165	2622	14874	14875	32815;32816	32816					0.053678223544807224
LPYYAVVKV	9	Unmodified	_LPYYAVVKV_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3136596679688	2	526.312961	1050.61137	0.55296	0.00029103	0.70255	0.00036976	1.2555	0.00066079	526.3132870668627	57.611	0.45203	57.611	57.376	57.828	0					35	15	3	0	0	0	0.0061338	1	13913	13913		85.357	63.82	1	967810			26166	1234	14875	14876	32817	32817					0.08808692005140983
LPYYAVVKV	9	Unmodified	_LPYYAVVKV_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	526.312961	1050.61137	0.47845	0.00025182	1.2143	0.00063912	1.6928	0.00089094	526.3134561474593	57.419	0.46995	57.504	57.318	57.788	0.085621	-0.076714	0.00013698	NaN	85.357	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	858240			26167	1234	14875	14876							0.08808692005140983
LPYYAVVKV	9	Unmodified	_LPYYAVVKV_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	526.312961	1050.61137	0.36596	0.00019261	1.3515	0.00071132	1.7175	0.00090393	526.3136840424407	57.645	0.50825	57.627	57.285	57.793	-0.017197	0.046596	0.00028139	NaN	85.357	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1009600			26168	1234	14875	14876							0.08808692005140983
LPYYIGISI	9	Unmodified	_LPYYIGISI_					0	0	0		ENSG00000121966|ENST00000241393|CXCR4;nc|ENSG00000121966|P61073-2|CXCR4	ENSG00000121966|ENST00000241393|CXCR4	ENSG00000121966|ENST00000241393|CXCR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7970581054688	2	519.797143	1037.57973	0.63622	0.00033071	-0.0649	-3.3735E-05	0.57132	0.00029697	519.7969519226999	84.877	0.80459	84.877	84.612	85.417	0					73	30	3	0	0	0	0.017871	2	22305	22253;22305		67.344	22.937	1	904490			26169	3024	14876	14877	32818;32819	32819					0.06244699251192287
LPYYIGISI	9	Unmodified	_LPYYIGISI_					0	0	0		ENSG00000121966|ENST00000241393|CXCR4;nc|ENSG00000121966|P61073-2|CXCR4	ENSG00000121966|ENST00000241393|CXCR4	ENSG00000121966|ENST00000241393|CXCR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7973022460938	2	519.797143	1037.57973	0.58106	0.00030203	-0.0045359	-2.3577E-06	0.57652	0.00029968	519.796894127577	84.773	0.79601	84.853	84.618	85.414	0.080887					73	30	3	0	0	0	0.015674	2	22234	22234;22284		70.716	24.695	1	888670			26170	3024	14876	14877	32820;32821	32820					0.06244699251192287
LPYYIGISI	9	Unmodified	_LPYYIGISI_					0	0	0		ENSG00000121966|ENST00000241393|CXCR4;nc|ENSG00000121966|P61073-2|CXCR4	ENSG00000121966|ENST00000241393|CXCR4	ENSG00000121966|ENST00000241393|CXCR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.79736328125	2	519.797143	1037.57973	0.56112	0.00029167	0.090431	4.7006E-05	0.65155	0.00033868	519.7969543123746	84.871	0.66348	84.859	84.557	85.221	-0.01284					70	26	3	0	0	0	0.029841	2	22242	22242;22287		60.39	14.369	1	650610			26171	3024	14876	14877	32822;32823	32822					0.06244699251192287
LPYYRGRW	8	Unmodified	_LPYYRGRW_					0	0	0			REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4	REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7964477539062	2	555.795801	1109.57705	-0.087213	-4.8473E-05	1.1072	0.00061539	1.02	0.00056692	555.7969107889882	118.24	0.039841	118.24	118.2	118.24	0					6	4	2	0	0	0	0.34434	1	30543	30543		0.79363	0	1	9849.6	+		26172	17410	14877	14878	32824	32824					0.026642886369018015
LPYYRGRW	8	Unmodified	_LPYYRGRW_					0	0	0			REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4	REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7957763671875	2	555.795801	1109.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.36	1	115.34	114.84	115.84	-0.020988								0	0	0	0.37992	1	29918	29918		0.79363	0.10326	1		+		26173	17410	14877	14878	32825	32825					0.026642886369018015
LPYYRGRW	8	Unmodified	_LPYYRGRW_					0	0	0			REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4	REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7960815429688	2	555.795801	1109.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.08	1	116.1	115.6	116.6	0.020988								0	0	0	0.37992	1	30128	30128		0.79363	0	1		+		26174	17410	14877	14878	32826	32826					0.026642886369018015
LPYYRGRW	8	Unmodified	_LPYYRGRW_					0	0	0			REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4	REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7958984375	2	555.795801	1109.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.27	1	118.3	117.8	118.8	0.026253								0	0	0	0.37992	1	30629	30629		0.79363	0	1		+		26175	17410	14877	14878	32827	32827					0.026642886369018015
LQAARKRWPR	10	Unmodified	_LQAARKRWPR_					0	0	0			REV__nc|ENSG00000182366|P0C7U9|FAM87A	REV__nc|ENSG00000182366|P0C7U9|FAM87A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.9137878417969	3	427.926545	1280.75781	-0.13374	-5.7233E-05	-0.614	-0.00026275	-0.74775	-0.00031998	427.92630371729035	23.847	0.96505	23.774	23.422	24.387	-0.072559					73	32	3	0	0	0	0.34325	1	3595	3595		8.4443	4.0382	1	155530	+		26176	23120	14878	14879	32828	32828					0.12865807013577069
LQAELKSPI	9	Unmodified	_LQAELKSPI_					0	0	0			REV__ENSG00000132938|ENST00000612955|MTUS2	REV__ENSG00000132938|ENST00000612955|MTUS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2686462402344	2	499.797675	997.580796	0.47597	0.00023789	-0.11754	-5.8748E-05	0.35843	0.00017914	499.7976991167289	21.165	0.36849	21.113	20.835	21.204	-0.05291					18	12	2	0	0	0	0.25202	1	2752	2752		10.824	0	1	35101	+		26177	15597	14879	14880	32829	32829					0.08190913620080664
LQAELKSPI	9	Unmodified	_LQAELKSPI_					0	0	0			REV__ENSG00000132938|ENST00000612955|MTUS2	REV__ENSG00000132938|ENST00000612955|MTUS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	499.797675	997.580796	0.58951	0.00029464	-0.26878	-0.00013433	0.32073	0.0001603	499.7975643306576	21.196	0.28449	21.086	20.95	21.234	-0.11003	-0.00077504	-0.00020033	NaN	10.824	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42096	+		26178	15597	14879	14880							0.08190913620080664
LQAEPQLQA	9	Unmodified	_LQAEPQLQA_					0	0	0			REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2690124511719	2	499.269281	996.52401	0.50237	0.00025082	-0.59025	-0.00029469	-0.087875	-4.3873E-05	499.26894298270156	20.876	0.6858	20.876	20.542	21.228	0					36	23	2	0	0	0	0.26068	1	2674	2674		3.2813	0.28607	1	63803	+		26179	13824	14880	14881	32830	32830					0.02560866063561207
LQAEPQLQA	9	Unmodified	_LQAEPQLQA_					0	0	0			REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2688293457031	2	499.269281	996.52401	0.64312	0.00032109	-0.57467	-0.00028692	0.068454	3.4177E-05	499.26884608743893	21.082	0.62568	20.972	20.609	21.234	-0.11003					31	21	2	0	0	0	0.26068	1	2724	2724		3.2813	0.70383	1	61102	+		26180	13824	14880	14881	32831	32831					0.02560866063561207
LQAEPQLQA	9	Unmodified	_LQAEPQLQA_					0	0	0			REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2686462402344	2	499.269281	996.52401	0.51665	0.00025795	-0.45537	-0.00022735	0.061273	3.0592E-05	499.2690017822206	20.954	0.6204	20.901	20.613	21.233	-0.05291					35	21	2	0	0	0	0.21447	1	2752	2752		21.537	1.1224	1	84568	+		26181	13824	14880	14881	32832	32832					0.02560866063561207
LQAFLASSFK	10	Unmodified	_LQAFLASSFK_					0	0	0		ENST00000530578.1_1_11:122665536-122667965:+|nuORF	ENST00000530578.1_1_11:122665536-122667965:+|nuORF	ENST00000530578.1_1_11:122665536-122667965:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2973022460938	2	556.310949	1110.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.35	1	101.35	100.85	101.85	-0.0054703								0	0	0	0.3726	1	27059	27059		5.2969	0.96765	1				26182	11617	14881	14882	32833	32833					0.05646602511410492
LQAGKILLYYK	11	Unmodified	_LQAGKILLYYK_					0	0	0		ENST00000523989.1_1_8:43052051-43052222:+|nuORF;ENST00000519705.1_1_8:43052051-43054709:+|nuORF	ENST00000523989.1_1_8:43052051-43052222:+|nuORF	ENST00000523989.1_1_8:43052051-43052222:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2674560546875	3	437.267463	1308.78056	0.10712	4.684E-05	0.53652	0.0002346	0.64364	0.00028144	437.2675831394804	45.96	1.6976	46.025	45.647	47.345	0.065048					200	60	5	0	0	0	0.46704	1	10394	10394		2.4348	0.18206	1	6723500			26183	11465	14882	14883	32834	32834					0.13851968567837503
LQALFMGSPL	10	Unmodified	_LQALFMGSPL_					0	0	0		ENST00000515235.6_1_5:118788237-118827866:+|nuORF;ENST00000511186.5_1_5:118788168-118811542:+|nuORF	ENST00000515235.6_1_5:118788237-118827866:+|nuORF	ENST00000515235.6_1_5:118788237-118827866:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7869873046875	2	538.794078	1075.5736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.692	1	83.675	83.175	84.175	-0.016823								0	0	0	0.34209	1	21892	21892		18.146	1.2041	1				26184	11423	14883	14884	32835	32835					0.038838577480191816
LQAPAEQQL	9	Unmodified	_LQAPAEQQL_					0	0	0			REV__ENSG00000176809|ENST00000584306|LRRC37A3	REV__ENSG00000176809|ENST00000584306|LRRC37A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.27020263671875	2	499.269281	996.52401	0.51665	0.00025795	-0.45537	-0.00022735	0.061273	3.0592E-05	499.2690017822206	20.954	0.6204	20.901	20.613	21.233	-0.05291					35	21	2	0	0	0	0.25779	1	2700	2700		6.2058	1.4498	1	84568	+		26185	17946	14884	14885	32836	32836					0.025608660635725755
LQAPVGQRGA	10	Unmodified	_LQAPVGQRGA_					0	0	0		ENSG00000011590|ENST00000392197|ZBTB32	ENSG00000011590|ENST00000392197|ZBTB32	ENSG00000011590|ENST00000392197|ZBTB32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2690124511719	2	498.78289	995.551228	0.5092	0.00025398	0.44404	0.00022148	0.95323	0.00047546	498.7829436390713	20.968	0.56814	20.968	20.57	21.138	0					31	19	2	0	0	0	0.38515	1	2674	2674		6.2058	0	1	51944			26186	448	14885	14886	32837	32837					0.05327394394623752
LQAPVGQRGA	10	Unmodified	_LQAPVGQRGA_					0	0	0		ENSG00000011590|ENST00000392197|ZBTB32	ENSG00000011590|ENST00000392197|ZBTB32	ENSG00000011590|ENST00000392197|ZBTB32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2688293457031	2	498.78289	995.551228	0.64338	0.00032091	-0.10324	-5.1495E-05	0.54014	0.00026941	498.78254412055077	21.048	0.47919	20.938	20.699	21.178	-0.11003					25	16	2	0	0	0	0.38515	1	2724	2724		6.2058	0.9089	1	69957			26187	448	14885	14886	32838	32838					0.05327394394623752
LQASRPQAQD	10	Unmodified	_LQASRPQAQD_					0	0	0		nc|ENSG00000285687|A8MWA6|FAM90A22;nc|ENSG00000215354|P0C7X0|FAM90A24	nc|ENSG00000285687|A8MWA6|FAM90A22	nc|ENSG00000285687|A8MWA6|FAM90A22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8037109375	2	557.285994	1112.55744	0.19887	0.00011083	-0.4956	-0.00027619	-0.29673	-0.00016537	557.2858232117442	16.515	0.50583	16.515	16.214	16.72	0					26	17	2	0	0	0	0.33104	1	1402	1402		16.149	3.1066	1	107790			26188	12944	14886	14887	32839	32839					0.0056586783548482344
LQASRPQAQD	10	Unmodified	_LQASRPQAQD_					0	0	0		nc|ENSG00000285687|A8MWA6|FAM90A22;nc|ENSG00000215354|P0C7X0|FAM90A24	nc|ENSG00000285687|A8MWA6|FAM90A22	nc|ENSG00000285687|A8MWA6|FAM90A22	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	557.285994	1112.55744	0.19887	0.00011083	-0.4956	-0.00027619	-0.29673	-0.00016537	557.2858232117442	16.515	0.50583	16.515	16.214	16.72	0	-0.020536	-0.00035193	NaN	16.149	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107790			26189	12944	14886	14887							0.0056586783548482344
LQASRPQAQD	10	Unmodified	_LQASRPQAQD_					0	0	0		nc|ENSG00000285687|A8MWA6|FAM90A22;nc|ENSG00000215354|P0C7X0|FAM90A24	nc|ENSG00000285687|A8MWA6|FAM90A22	nc|ENSG00000285687|A8MWA6|FAM90A22	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	557.285994	1112.55744	0.12549	6.9933E-05	-0.049073	-2.7348E-05	0.076415	4.2585E-05	557.2859012567324	16.671	0.41988	16.556	16.275	16.695	-0.11434	0.020536	0.00014576	NaN	16.149	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89276			26190	12944	14886	14887							0.0056586783548482344
LQATLRQQ	8	Unmodified	_LQATLRQQ_					0	0	0			REV__nc|ENSG00000168386|Q4L180-2|FILIP1L	REV__nc|ENSG00000168386|Q4L180-2|FILIP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2672424316406	2	479.277441	956.540328	-0.028336	-1.3581E-05	0.15015	7.1964E-05	0.12181	5.8383E-05	479.2774298233509	23.284	0.73789	23.284	22.996	23.734	0					58	25	3	0	0	0	0.44569	1	3469	3469		7.2892	1.5288	1	606260	+		26191	17455	14887	14888	32840	32840					0.060319920203255606
LQAVCGGRTIT	11	Unmodified	_LQAVCGGRTIT_					0	0	0			REV__ENSG00000174339|ENST00000307832|OR2Y1	REV__ENSG00000174339|ENST00000307832|OR2Y1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.2735595703125	2	559.802965	1117.59138	0.51373	0.00028759	0.98534	0.00055159	1.4991	0.00083918	559.8037417611172	64.447	0.70247	64.539	64.234	64.937	0.09288					50	25	3	0	0	0	0.32367	1	15921	15921		13.615	6.8917	1	281610	+		26192	17827	14888	14889	32841	32841					0.03728573002877056
LQDADEEHVE	10	Unmodified	_LQDADEEHVE_					0	0	0		ENSG00000198088|ENST00000372466|NUP62CL	ENSG00000198088|ENST00000372466|NUP62CL	ENSG00000198088|ENST00000372466|NUP62CL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.806884765625	2	592.756932	1183.49931	0.62374	0.00036972	1.4303	0.0008478	2.054	0.0012175	592.7576268036173	85.214	0.416	85.294	84.998	85.414	0.080887					25	15	2	0	0	0	0.31958	1	22383	22383		2.7352	0	1	180710			26193	8036	14889	14890	32842	32842					-0.08509858600473308
LQDEPKIWV	9	Unmodified	_LQDEPKIWV_					0	0	0			REV__nc|ENSG00000135297|Q9Y2Z2-5|MTO1	REV__nc|ENSG00000135297|Q9Y2Z2-5|MTO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3087768554688	2	564.308406	1126.60226	-0.077128	-4.3524E-05	0.36318	0.00020494	0.28605	0.00016142	564.3085622924731	12.729	0.23475	12.729	12.612	12.847	0					13	7	2	0	0	0	0.26168	1	226	226		1.8442	0.19162	1	81350	+		26194	15730	14890	14891	32843	32843					0.04402298648778924
LQDQIRHWF	9	Unmodified	_LQDQIRHWF_					0	0	0		ENSG00000132321|ENST00000409907|IQCA1;nc|ENSG00000132321|Q86XH1-5|IQCA1;nc|ENSG00000132321|Q86XH1-2|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	ENSG00000132321|ENST00000409907|IQCA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.77294921875	2	621.822547	1241.63054	-0.26731	-0.00016622	-2.7263	-0.0016953	-2.9936	-0.0018615	621.8207517936113	13.423	0.17182	13.324	13.217	13.389	-0.099291					8	5	2	0	0	0	0.26274	1	421	421		0	0	1	36737			26195	3620	14891	14892	32844	32844					0.019390413487371916
LQEELKIRRV	10	Unmodified	_LQEELKIRRV_					0	0	0		nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6	nc|ENSG00000125354|Q14141-3|SEPTIN6	nc|ENSG00000125354|Q14141-3|SEPTIN6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.21563720703125	3	428.597983	1282.77212	-0.12713	-5.4489E-05	-0.34922	-0.00014968	-0.47635	-0.00020416	428.5978057361021	19.341	0.37022	19.286	19.114	19.485	-0.055693					22	12	2	0	0	0	0.32106	1	2244	2244		2.8433	0	1	43168			26196	3198	14892	14893	32845	32845					0.1420441465118074
LQEEPGRDQ	9	Unmodified	_LQEEPGRDQ_					0	0	0			REV__ENST00000566542.5_1_16:15131890-15138296:-|nuORF	REV__ENST00000566542.5_1_16:15131890-15138296:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.77294921875	2	536.256902	1070.49925	0.47938	0.00025707	1.7454	0.00093598	2.2248	0.001193	536.2579268575131	80.275	0.49841	80.248	79.977	80.475	-0.026825					28	16	2	0	0	0	0.19083	1	20829	20829		24.991	9.1438	1	179260	+		26197	16769	14893	14894	32846	32846					-0.03317813809803738
LQEGEFLLQ	9	Unmodified	_LQEGEFLLQ_					0	0	0		ENSG00000106546|ENST00000242057|AHR;AHR|p.Q667Pfs*7|1|0.3|ENSG00000106546|chr7:17339823-17339824|-/C|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8009033203125	2	538.784764	1075.55498	0.36424	0.00019625	-1.8403	-0.0009915	-1.476	-0.00079526	538.7838601108057	16.011	0.36453	15.948	15.756	16.121	-0.062533					23	12	3	0	0	0	0.28674	1	1171	1171		10.824	0.024421	1	38375			26198	2082	14894	14895	32847	32847					0.020220193778186513
LQEHLCAR	8	Unmodified	_LQEHLCAR_					0	0	0		ENST00000490812.5_1_2:131129781-131129868:+|nuORF	ENST00000490812.5_1_2:131129781-131129868:+|nuORF	ENST00000490812.5_1_2:131129781-131129868:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2590637207031	2	485.250369	968.486184	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.084	1	22.034	21.534	22.534	-0.049377								0	0	0	0.34734	1	3036	3036		15.847	1.0089	1				26199	11167	14895	14896	32848	32848					0.0006807659711967062
LQEHQSGLQ	9	Unmodified	_LQEHQSGLQ_					0	0	0		ENST00000420757.1_1_1:240799967-240800270:-|nuORF	ENST00000420757.1_1_1:240799967-240800270:-|nuORF	ENST00000420757.1_1_1:240799967-240800270:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7699584960938	2	520.261988	1038.50942	0.18767	9.7638E-05	-0.79061	-0.00041132	-0.60294	-0.00031368	520.261976801004	15.627	0.66333	15.627	15.127	15.791	0					42	22	3	0	0	0	0.24848	1	955	955		13.906	2.2658	1	127820			26200	10364	14896	14897	32849	32849					-0.008292060845633387
LQEKAFVVK	9	Unmodified	_LQEKAFVVK_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3112182617188	2	531.321317	1060.62808	0.4496	0.00023888	-0.15505	-8.2379E-05	0.29455	0.0001565	531.3212195185322	51.612	1.8028	51.621	51.272	53.075	0.0095673					178	66	5	0	0	0	0.25989	1	12219	12219		14.838	0	1	21513000	+		26201	16663	14897	14898	32850	32850					0.1001919289108173
LQELKQQRKL	10	Unmodified	_LQELKQQRKL_					0	0	0			REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF	REV__ENST00000475858.1_1_10:14563191-14564038:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2157287597656	3	428.597983	1282.77212	-0.15585	-6.6796E-05	0.17437	7.4736E-05	0.018525	7.94E-06	428.5980854741117	19.395	0.42833	19.279	19.086	19.514	-0.11592					23	14	2	0	0	0	0.32106	1	2268	2268		2.8433	0	1	76420	+		26202	13670	14898	14899	32851	32851					0.14204414651203479
LQEPKPLED	9	Unmodified	_LQEPKPLED_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.29248046875	2	534.782222	1067.54989	0.38099	0.00020375	3.1167	0.0016668	3.4977	0.0018705	535.2855981726194	89.824	0.209	89.915	89.859	90.068	0.090561					20	15	2	0	0	0	0.25202	1	23762	23762		6.7232	0.51738	1	87765	+		26203	16613	14899	14900	32852	32852					0.01881715515196447
LQERKAAFS	9	Unmodified	_LQERKAAFS_					0	0	0		ENST00000484717.5_1_3:38035793-38043423:+|nuORF;nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL	ENST00000484717.5_1_3:38035793-38043423:+|nuORF	ENST00000484717.5_1_3:38035793-38043423:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.22119140625	2	525.290548	1048.56654	0.51335	0.00026966	-0.626	-0.00032883	-0.11264	-5.9171E-05	525.2902483064411	28.819	0.33775	28.819	28.64	28.978	0					21	11	2	0	0	0	0.24311	1	5024	5024		16.942	0	1	168950			26204	3940	14900	14901	32853	32853					0.044202611917853574
LQERKAAFS	9	Unmodified	_LQERKAAFS_					0	0	0		ENST00000484717.5_1_3:38035793-38043423:+|nuORF;nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL	ENST00000484717.5_1_3:38035793-38043423:+|nuORF	ENST00000484717.5_1_3:38035793-38043423:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	525.290548	1048.56654	0.41386	0.0002174	-0.4664	-0.000245	-0.052539	-2.7598E-05	525.2903071614	28.822	0.35805	28.818	28.599	28.957	-0.0042572	0.0046777	-2.3833E-05	NaN	16.942	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129140			26205	3940	14900	14901							0.044202611917853574
LQERKAAFS	9	Unmodified	_LQERKAAFS_					0	0	0		ENST00000484717.5_1_3:38035793-38043423:+|nuORF;nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL	ENST00000484717.5_1_3:38035793-38043423:+|nuORF	ENST00000484717.5_1_3:38035793-38043423:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	525.290548	1048.56654	0.33065	0.00017369	-0.21428	-0.00011256	0.11637	6.1128E-05	525.2905176763874	28.803	0.36063	28.803	28.635	28.996	0.0004673	-0.010127	0.00024104	NaN	16.942	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131770			26206	3940	14900	14901							0.044202611917853574
LQEVADKFE	9	Unmodified	_LQEVADKFE_					0	0	0			REV__nc|ENSG00000111846|Q8N0V5-2|GCNT2	REV__nc|ENSG00000111846|Q8N0V5-2|GCNT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.787841796875	2	539.774396	1077.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.653	1	52.704	52.204	53.204	0.050575								0	0	0	0.18053	1	12376	12376		27.629	2.2295	1		+		26207	22946	14901	14902	32854	32854					-0.001425710018565951
LQFETKPKIAP	11	Unmodified	_LQFETKPKIAP_					0	0	0			REV__ENST00000490632.1_1_2:111406757-111408294:-|nuORF	REV__ENST00000490632.1_1_2:111406757-111408294:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.8715209960938	2	636.371538	1270.72852	0.3296	0.00020975	-1.9031	-0.0012111	-1.5735	-0.0010013	636.8711579865088	106.75	0.071968	106.74	106.7	106.77	-0.0060425					12	8	2	0	0	0	0.40332	1	28208	28208		10.8	2.644	1	1114600	+		26208	17532	14902	14903	32855	32855					0.10398805154090951
LQFETKPKIAP	11	Unmodified	_LQFETKPKIAP_					0	0	0			REV__ENST00000490632.1_1_2:111406757-111408294:-|nuORF	REV__ENST00000490632.1_1_2:111406757-111408294:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.87060546875	2	636.371538	1270.72852	0.54388	0.00034611	-1.4796	-0.00094158	-0.93573	-0.00059547	636.3711911093159	106.73	0.065857	106.73	106.7	106.77	0.0050507					15	9	2	0	0	0	0.43149	1	28236	28236		7.1017	0.89594	1	1049900	+		26209	17532	14902	14903	32856	32856					0.10398805154090951
LQFLTPVCF	9	Unmodified	_LQFLTPVCF_					0	0	0		MROH1|p.R496C|1|0.3|ENSG00000179832|chr8:144239074-144239074|C/T|missense_variant	MROH1|p.R496C|1|0.3|ENSG00000179832|chr8:144239074-144239074|C/T|missense_variant	MROH1|p.R496C|1|0.3|ENSG00000179832|chr8:144239074-144239074|C/T|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2922973632812	2	534.283346	1066.55214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.876	1	89.876	89.376	90.376	0								0	0	0	0.22377	1	23801	23801		14.838	0.25658	1				26210	12546	14903	14904	32857	32857					0.021524727192627324
LQFREKLRYLI	11	Unmodified	_LQFREKLRYLI_					0	0	0			REV__nc|ENSG00000153233|Q15256-3|PTPRR	REV__nc|ENSG00000153233|Q15256-3|PTPRR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.3237609863281	3	493.632916	1477.87692	0.54639	0.00026972	0.43547	0.00021496	0.98186	0.00048468	493.6331392062299	40.605	0.48032	40.698	40.474	40.954	0.09267					28	17	2	0	0	0	0.3333	1	8655	8655		1.3296	0.11481	1	244710	+		26211	16616	14904	14905	32858	32858					0.1570953612779249
LQFREKLRYLI	11	Unmodified	_LQFREKLRYLI_					0	0	0			REV__nc|ENSG00000153233|Q15256-3|PTPRR	REV__nc|ENSG00000153233|Q15256-3|PTPRR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.32391357421875	3	493.632916	1477.87692	0.39038	0.0001927	0.72367	0.00035723	1.114	0.00054993	493.9676205297751	40.519	0.45863	40.619	40.453	40.912	0.099403					26	16	2	0	0	0	0.3333	1	8679	8679		1.3296	0.11481	1	328140	+		26212	16616	14904	14905	32859	32859					0.1570953612779249
LQFREPLD	8	Unmodified	_LQFREPLD_					0	0	0			REV__ENSG00000109111|ENST00000314616|SUPT6H	REV__ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.75732421875	2	509.271824	1016.5291	-0.045045	-2.294E-05	-0.43795	-0.00022303	-0.48299	-0.00024597	509.2713767674368	30.28	0.31111	30.307	30.083	30.394	0.027157					13	10	2	0	0	0	0.34353	1	5513	5513		4.756	0	1	41368	+		26213	14629	14905	14906	32860	32860					0.02149169926178729
LQFRQLIFF	9	Unmodified	_LQFRQLIFF_					0	0	0		ENST00000305901.6_1_15:53049713-53049821:-|nuORF	ENST00000305901.6_1_15:53049713-53049821:-|nuORF	ENST00000305901.6_1_15:53049713-53049821:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3706665039062	2	606.350409	1210.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.98	1	112.99	112.49	113.49	0.014824								0	0	0	0.2672	1	29399	29399		0.52476	0	1				26214	9270	14906	14907	32861	32861					0.08934874536362258
LQFYFFCTF	9	Unmodified	_LQFYFFCTF_					0	0	0		ENSG00000167825|ENST00000301532|OR5I1	ENSG00000167825|ENST00000301532|OR5I1	ENSG00000167825|ENST00000301532|OR5I1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.8562316894531	3	405.856294	1214.54705	-0.058144	-2.3598E-05	-0.22918	-9.3016E-05	-0.28733	-0.00011661	405.8562111970985	52.93	0.67665	52.92	52.601	53.278	-0.0096054					50	24	3	0	0	0	0.21303	1	12456	12456		15.248	0	1	657820			26215	6215	14907	14908	32862	32862					-0.051638311433180206
LQGAEHHEAVE	11	Unmodified	_LQGAEHHEAVE_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.88421630859375	3	407.194915	1218.56291	-0.043613	-1.7759E-05	1.0639	0.00043322	1.0203	0.00041546	407.1953384972447	20.342	0.64147	20.342	20.157	20.798	0					34	22	2	0	0	0	0.3325	1	2638	2638		4.1166	1.3814	1	136430			26216	7211	14908	14909	32863	32863					-0.037624533727239395
LQGAFAFVLD	10	Unmodified	_LQGAFAFVLD_					0	0	0			REV__nc|ENSG00000172819|P13631-3|RARG	REV__nc|ENSG00000172819|P13631-3|RARG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2778930664062	2	540.78985	1079.56515	0.97644	0.00052805	0.17372	9.3946E-05	1.1502	0.00062199	540.7899844296784	47.552	0.18092	47.595	47.43	47.611	0.04332					8	6	2	0	0	0	0.31358	1	10754	10754		9.3831	1.473	1	193830	+		26217	17735	14909	14910	32864	32864					0.028546271030336356
LQGIILETVP	10	Unmodified	_LQGIILETVP_					0	0	0		ENST00000527755.5_1_11:119003111-119005205:+|nuORF;ENSG00000172273|ENST00000350777|HINFP	ENST00000527755.5_1_11:119003111-119005205:+|nuORF	ENST00000527755.5_1_11:119003111-119005205:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.824951171875	2	541.826432	1081.63831	0.12183	6.6011E-05	-1.4142	-0.00076623	-1.2923	-0.00070021	541.8248209595987	28.21	0.5184	28.21	27.954	28.472	0					35	17	3	0	0	0	0.37133	1	4915	4915		8.7454	1.4562	1	166860			26218	6616	14910	14911	32865	32865					0.10075755825687338
LQGRLTQQL	9	Unmodified	_LQGRLTQQL_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7930908203125	2	528.811648	1055.60874	0.65025	0.00034386	0.62713	0.00033163	1.2774	0.00067549	528.8119222964075	37.157	1.3342	37.25	37.01	38.344	0.093014					115	48	4	0	0	0	0.11234	1	7689	7689		36.506	0	1	9870100	+		26219	15255	14911	14912	32866	32866					0.08316236600194316
LQGSELSL	8	Unmodified	_LQGSELSL_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.73193359375	2	423.732	845.449448	-0.070409	-2.9834E-05	0.2159	9.1485E-05	0.14549	6.165E-05	423.73198945640974	67.406	0.541	67.406	67.106	67.647	0					33	18	2	0	0	0	0.064917	1	16927	16927		71.134	0	1	340900			26220	7068	14912	14913	32867	32867					0.020541032522032765
LQGSELSL	8	Unmodified	_LQGSELSL_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.7319641113281	2	423.732	845.449448	-0.08749	-3.7072E-05	0.085724	3.6324E-05	-0.001766	-7.4831E-07	423.7319686995078	67.257	0.64977	67.335	67.094	67.744	0.078041					37	22	2	0	0	0	0.14707	1	16903	16903		52.268	0	1	319850			26221	7068	14912	14913	32868	32868					0.020541032522032765
LQGSELSL	8	Unmodified	_LQGSELSL_					0	0	0		ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.73187255859375	2	423.732	845.449448	-0.14527	-6.1556E-05	0.0039438	1.6711E-06	-0.14133	-5.9885E-05	423.7319846615298	67.392	0.55652	67.375	67.115	67.672	-0.016296					31	18	2	0	0	0	0.095164	1	16903	16903		61.357	0	1	319790			26222	7068	14912	14913	32869	32869					0.020541032522032765
LQGSLSFQNF	10	Unmodified	_LQGSLSFQNF_					0	0	0		ENST00000555147.1_1_16:89984433-89984928:+|nuORF	ENST00000555147.1_1_16:89984433-89984928:+|nuORF	ENST00000555147.1_1_16:89984433-89984928:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.314208984375	2	570.787838	1139.56112	0.41793	0.00023855	-0.29935	-0.00017086	0.11859	6.7689E-05	570.7880354304166	65.773	0.41775	65.761	65.53	65.948	-0.011337					19	14	2	0	0	0	0.30093	1	16444	16444		16.149	0	1	230630			26223	11843	14913	14914	32870	32870					-0.0030746239067411807
LQGSPLPPR	9	Unmodified	_LQGSPLPPR_					0	0	0		nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-2|TRIOBP	nc|ENSG00000100106|Q9H2D6-2|TRIOBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.75848388671875	2	482.782359	963.550165	0.49827	0.00024056	0.26317	0.00012705	0.76143	0.00036761	482.7825385310141	33.579	1.4166	33.646	33.044	34.461	0.06636					90	50	2	0	0	0	0.24471	1	6366	6366		17.113	0	1	193550			26224	1534	14914	14915	32871	32871					0.06693180025695256
LQGSPLPPR	9	Unmodified	_LQGSPLPPR_					0	0	0		nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-2|TRIOBP	nc|ENSG00000100106|Q9H2D6-2|TRIOBP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	482.782359	963.550165	0.12565	6.0662E-05	0.70339	0.00033958	0.82904	0.00040024	482.7827280953124	33.471	1.4381	33.538	33.025	34.463	0.0667	-0.11243	0.00023498	NaN	17.113	88	51	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172460			26225	1534	14914	14915							0.06693180025695256
LQGTLVSH	8	Unmodified	_LQGTLVSH_					0	0	0		ENST00000418115.5_1_3:49397107-49397293:-|nuORF	ENST00000418115.5_1_3:49397107-49397293:-|nuORF	ENST00000418115.5_1_3:49397107-49397293:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.2156982421875	2	427.74016	853.465767	-0.24473	-0.00010468	0.17739	7.5875E-05	-0.067342	-2.8805E-05	427.740215753156	19.448	0.84422	19.448	18.952	19.796	0					51	29	2	0	0	0	0.34039	1	2238	2238		15.847	0	1	94829			26226	10345	14915	14916	32872	32872					0.03317229208948902
LQGTLVSH	8	Unmodified	_LQGTLVSH_					0	0	0		ENST00000418115.5_1_3:49397107-49397293:-|nuORF	ENST00000418115.5_1_3:49397107-49397293:-|nuORF	ENST00000418115.5_1_3:49397107-49397293:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.21563720703125	2	427.74016	853.465767	-0.037889	-1.6206E-05	-0.33931	-0.00014513	-0.37719	-0.00016134	427.7399949732752	19.512	1.1879	19.456	18.961	20.149	-0.055693					64	41	2	0	0	0	0.34167	1	2244	2244		11.64	0	1	71795			26227	10345	14915	14916	32873	32873					0.03317229208948902
LQGVNGVSVAP	11	Unmodified	_LQGVNGVSVAP_					0	0	0			REV__ENSG00000128789|ENST00000317615|PSMG2	REV__ENSG00000128789|ENST00000317615|PSMG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.79052734375	2	520.790381	1039.56621	0.26948	0.00014035	0.35854	0.00018672	0.62802	0.00032707	520.7905296654272	25.833	1.0539	25.833	25.504	26.558	0					72	36	3	0	0	0	0.44828	1	4272	4272		4.897	0.95262	1	225490	+		26228	15387	14916	14917	32874	32874					0.048008414719333814
LQHAALPGL	9	Unmodified	_LQHAALPGL_					0	0	0		nc|ENSG00000180694|Q6YI46-4|TMEM64;ENSG00000180694|ENST00000458549|TMEM64	nc|ENSG00000180694|Q6YI46-4|TMEM64	nc|ENSG00000180694|Q6YI46-4|TMEM64	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.7582702636719	2	460.271627	918.528701	0.17032	7.8393E-05	0.017967	8.2697E-06	0.18829	8.6663E-05	460.27160867049736	35.835	0.62114	35.835	35.547	36.168	0					40	22	2	0	0	0	0.079066	1	7273	7273		42.095	9.9776	1	531240			26229	7196	14917	14918	32875	32875					0.0661779499697559
LQHENPSHFE	10	Unmodified	_LQHENPSHFE_					0	0	0		ENSG00000115474|ENST00000233826|KCNJ13	ENSG00000115474|ENST00000233826|KCNJ13	ENSG00000115474|ENST00000233826|KCNJ13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.7862548828125	2	619.283451	1236.55235	0.49017	0.00030355	0.19669	0.00012181	0.68685	0.00042536	619.2831792390299	54.694	0.5093	54.678	54.415	54.924	-0.015923					26	17	2	0	0	0	0.3001	1	13030	13030		20.415	0	1	429810			26230	2651	14918	14919	32876	32876					-0.056464360271547775
LQHINQQHL	9	Unmodified	_LQHINQQHL_					0	0	0			REV__ENST00000462159.1_1_1:100573356-100598412:-|nuORF	REV__ENST00000462159.1_1_1:100573356-100598412:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.8078002929688	2	565.806897	1129.59924	0.43663	0.00024705	0.081265	4.598E-05	0.51789	0.00029303	565.8067559639458	21.871	0.70692	21.771	21.338	22.045	-0.10034					43	25	2	0	0	0	0.33018	1	3012	3012		4.3292	0.38484	1	147460	+		26231	16762	14919	14920	32877	32877					0.03962468314648504
LQHKPAYALV	10	Unmodified	_LQHKPAYALV_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8223876953125	2	570.332216	1138.64988	0.45705	0.00026067	-0.55093	-0.00031422	-0.093884	-5.3545E-05	570.3319033584853	44.125	0.7402	44.202	43.92	44.66	0.077518					43	27	2	0	0	0	0.2593	1	9726	9726		25.399	2.663	1	1107900	+		26232	17741	14920	14921	32878	32878					0.08609997639632638
LQHLKKRAN	9	Unmodified	_LQHLKKRAN_					0	0	0			REV__L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|73|2|sense	REV__L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|73|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.80126953125	2	554.340907	1106.66726	0.12519	6.9396E-05	0.23193	0.00012857	0.35712	0.00019796	554.3411411682432	15.352	0.37144	15.242	15.093	15.464	-0.10981					18	12	2	0	0	0	0.26257	1	1038	1038		0.52476	0	1	56562	+		26233	22810	14921	14922	32879	32879					0.11819337965334853
LQHLKKRAN	9	Unmodified	_LQHLKKRAN_					0	0	0			REV__L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|73|2|sense	REV__L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|73|2|sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	554.340907	1106.66726	0.046031	2.5517E-05	-0.046188	-2.5604E-05	-0.00015663	-8.6827E-08	554.3410468894223	15.21	0.39873	15.21	15.072	15.471	0	-0.036914	-0.00031612	NaN	0.52476	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41860	+		26234	22810	14921	14922							0.11819337965334853
LQHLKKRAN	9	Unmodified	_LQHLKKRAN_					0	0	0			REV__L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|73|2|sense	REV__L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|73|2|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	554.340907	1106.66726	-0.0044764	-2.4815E-06	0.61719	0.00034213	0.61271	0.00033965	554.3411451188765	15.354	0.26648	15.29	15.158	15.424	-0.064413	0.042301	0.00041936	NaN	0.52476	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40099	+		26235	22810	14921	14922							0.11819337965334853
LQIADKHALI	10	Unmodified	_LQIADKHALI_					0	0	0			REV__ENSG00000172113|ENST00000442597|NME6	REV__ENSG00000172113|ENST00000442597|NME6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8057861328125	2	561.337498	1120.66044	0.39292	0.00022056	0.23552	0.00013221	0.62844	0.00035277	561.3378118338112	51.215	0.25745	51.262	51.196	51.454	0.046574					15	9	2	0	0	0	0.3144	1	11963	11963		13.042	0.80181	1	174240	+		26236	17692	14922	14923	32880	32880					0.10493980294063476
LQIGAGEALK	10	Unmodified	_LQIGAGEALK_					0	0	0			REV__nc|ENSG00000100461|Q86U06-4|RBM23	REV__nc|ENSG00000100461|Q86U06-4|RBM23	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.29547119140625	2	500.295299	998.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.213	1	17.096	16.596	17.596	-0.11739								0	0	0	0.37869	1	1564	1564		2.7352	0.15772	1		+		26237	14202	14923	14924	32881	32881					0.07670029477321805
LQKAFEVTKI	10	Unmodified	_LQKAFEVTKI_					0	0	0			REV__nc|ENSG00000131759|P10276-3|RARA	REV__nc|ENSG00000131759|P10276-3|RARA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.342529296875	2	588.852981	1175.69141	0.53552	0.00031534	-2.0488	-0.0012065	-1.5133	-0.00089113	588.8508385018337	91.742	0.63477	91.743	91.437	92.072	0.00046539					70	40	3	0	0	0	0.37751	1	24304	24304		7.609	0	1	289270	+		26238	15534	14924	14925	32882	32882					0.11059133608318916
LQKAFEVTKI	10	Unmodified	_LQKAFEVTKI_					0	0	0			REV__nc|ENSG00000131759|P10276-3|RARA	REV__nc|ENSG00000131759|P10276-3|RARA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.342529296875	2	588.852981	1175.69141	0.53552	0.00031534	-2.0488	-0.0012065	-1.5133	-0.00089113	588.8508385018337	91.742	0.63477	91.743	91.437	92.072	0.00046539					70	40	3	0	0	0	0.31838	1	24304	24304		7.609	0	1	289270	+		26239	15534	14924	14925	32883	32883					0.11059133608318916
LQKGSHIRLYT	11	Unmodified	_LQKGSHIRLYT_					0	0	0			REV__ENST00000395067.6_1_9:103213293-103213446:+|nuORF	REV__ENST00000395067.6_1_9:103213293-103213446:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.26129150390625	3	439.254216	1314.74082	0.19349	8.4993E-05	2.0829	0.00091492	2.2764	0.00099991	439.58957346450126	35.939	0.39791	35.939	35.719	36.117	0					20	14	2	0	0	0	0.3331	1	7280	7280		2.2527	1.0379	1	188060	+		26240	20625	14925	14926	32884	32884					0.09603841617104081
LQKHSTQL	8	Unmodified	_LQKHSTQL_					0	0	0			REV__nc|ENSG00000289604|P0CG41|CTAGE8	REV__nc|ENSG00000289604|P0CG41|CTAGE8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.77215576171875	2	477.771991	953.529429	-0.0035953	-1.7177E-06	0.38978	0.00018622	0.38618	0.00018451	477.7722328656367	27.485	0.45166	27.463	27.242	27.693	-0.021412					33	15	3	0	0	0	0.1951	1	4672	4672		43.858	3.6191	1	224920	+		26241	19152	14926	14927	32885	32885					0.05080589646047429
LQKKQTQR	8	Unmodified	_LQKKQTQR_					0	0	0		nc|ENSG00000126858|Q8IXI2-5|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1	nc|ENSG00000126858|Q8IXI2-5|RHOT1	nc|ENSG00000126858|Q8IXI2-5|RHOT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3114013671875	2	515.311815	1028.60908	0.031627	1.6298E-05	-0.25352	-0.00013064	-0.22189	-0.00011434	515.3115729767983	15.148	0.56041	15.039	14.847	15.408	-0.10981					43	19	3	0	0	0	0.45307	1	977	977		4.756	0	1	323610			26242	3296	14927	14928	32886	32886					0.09591656320026232
LQKPGGRGAL	10	Unmodified	_LQKPGGRGAL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.801025390625	2	498.801083	995.587613	0.44893	0.00022393	-1.0588	-0.00052815	-0.6099	-0.00030422	498.8004939441164	21.291	0.60125	21.291	21.052	21.654	0					41	20	3	0	0	0	0.40106	1	2858	2858		3.2813	1.4371	1	104020			26243	6477	14928	14929	32887	32887					0.0896427129133599
LQKPGGRGAL	10	Unmodified	_LQKPGGRGAL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8006896972656	2	498.801083	995.587613	0.53335	0.00026604	-0.98155	-0.0004896	-0.44819	-0.00022356	498.8004076503667	21.427	0.47776	21.326	21.13	21.608	-0.10034					28	16	2	0	0	0	0.31867	1	2837	2837		18.146	1.2041	1	134330			26244	6477	14928	14929	32888	32888					0.0896427129133599
LQKRAESLVLP	11	Unmodified	_LQKRAESLVLP_					0	0	0			REV__ENSG00000164663|ENST00000682992|USP49	REV__ENSG00000164663|ENST00000682992|USP49	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.8838500976562	2	627.382437	1252.75032	-0.03381	-2.1212E-05	-0.44458	-0.00027892	-0.47839	-0.00030013	627.3817675327402	103.2	0.67025	103.2	102.88	103.55	0					238	97	3	0	0	0	0.46277	1	27360	27360		2.9952	0	1	27440000	+		26245	17172	14929	14930	32889	32889					0.1340560990265658
LQKRAESLVLP	11	Unmodified	_LQKRAESLVLP_					0	0	0			REV__ENSG00000164663|ENST00000682992|USP49	REV__ENSG00000164663|ENST00000682992|USP49	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.3809204101562	2	627.382437	1252.75032	-0.033487	-2.1009E-05	-0.6194	-0.0003886	-0.65289	-0.00040961	627.3816317037266	103.61	1.0906	103.61	103.49	104.58	0					325	150	3	0	0	0	0.46277	1	27519	27519		2.9952	0	1	28103000	+		26246	17172	14929	14930	32890	32890					0.1340560990265658
LQKRAESLVLP	11	Unmodified	_LQKRAESLVLP_					0	0	0			REV__ENSG00000164663|ENST00000682992|USP49	REV__ENSG00000164663|ENST00000682992|USP49	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.884521484375	2	627.382437	1252.75032	-0.14989	-9.4041E-05	-0.15927	-9.9924E-05	-0.30916	-0.00019396	627.3821091532982	103.22	0.65375	103.23	102.81	103.46	0.0082626					266	93	3	0	0	0	0.46277	1	27428	27428		2.9952	0	1	27999000	+		26247	17172	14929	14930	32891	32891					0.1340560990265658
LQKRAESLVLP	11	Unmodified	_LQKRAESLVLP_					0	0	0			REV__ENSG00000164663|ENST00000682992|USP49	REV__ENSG00000164663|ENST00000682992|USP49	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.383544921875	2	627.382437	1252.75032	-0.14775	-9.2694E-05	-0.40648	-0.00025502	-0.55423	-0.00034772	627.3819610401042	103.66	0.95815	103.67	103.45	104.41	0.0082626					353	133	3	0	0	0	0.46277	2	27641	27641;27659		2.9952	0	1	25439000	+		26248	17172	14929	14930	32892;32893	32892					0.1340560990265658
LQKRLRKN	8	Unmodified	_LQKRLRKN_					0	0	0			REV__nc|ENSG00000103021|Q9H0I3-2|CFAP263	REV__nc|ENSG00000103021|Q9H0I3-2|CFAP263	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2833862304688	2	528.343449	1054.67235	0.4453	0.00023527	2.5764	0.0013612	3.0217	0.0015965	528.3447895795158	16.506	0.19706	16.443	16.298	16.495	-0.062534					8	6	2	0	0	0	0.34437	1	1339	1339		0.69038	0	1	13452	+		26249	14346	14930	14931	32894	32894					0.14719641827946361
LQKRNMDYF	9	Unmodified	_LQKRNMDYF_					0	0	0		ENSG00000186094|ENST00000371839|AGBL4;nc|ENSG00000186094|Q5VU57-2|AGBL4	ENSG00000186094|ENST00000371839|AGBL4	ENSG00000186094|ENST00000371839|AGBL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.8900146484375	3	405.537736	1213.59138	-0.11098	-4.5008E-05	0.68975	0.00027972	0.57877	0.00023471	406.20753593581765	43.546	0.92297	43.546	43.116	44.039	0					68	33	3	0	0	0	0.2451	1	9691	9691		4.1895	3.4918	1	335670			26250	7587	14931	14932	32895	32895					-0.006874269971376634
LQKRNMDYF	9	Unmodified	_LQKRNMDYF_					0	0	0		ENSG00000186094|ENST00000371839|AGBL4;nc|ENSG00000186094|Q5VU57-2|AGBL4	ENSG00000186094|ENST00000371839|AGBL4	ENSG00000186094|ENST00000371839|AGBL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.3317260742188	2	607.802965	1213.59138	0.26475	0.00016091	-0.86679	-0.00052684	-0.60205	-0.00036593	608.3045180248255	43.245	0.84459	43.329	42.92	43.765	0.083992					42	30	2	0	0	0	0.2451	1	9581	9581		15.847	2.8047	1	411800			26251	7587	14931	14932	32896	32896					-0.006874269971376634
LQKTVMIPP	9	Unmodified	_LQKTVMIPP_					0	0	0			REV__nc|ENSG00000196091|Q00872-2|MYBPC1	REV__nc|ENSG00000196091|Q00872-2|MYBPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.307373046875	2	513.804445	1025.59434	0.49467	0.00025416	1.3171	0.00067672	1.8118	0.00093089	513.8048464664746	87.038	0.80743	87.038	86.703	87.511	0					67	33	3	0	0	0	0.33276	1	22897	22897		3.9444	1.3669	1	737580	+		26252	18614	14932	14933	32897	32897					0.08256448127667682
LQKTVMIPP	9	Unmodified	_LQKTVMIPP_					0	0	0			REV__nc|ENSG00000196091|Q00872-2|MYBPC1	REV__nc|ENSG00000196091|Q00872-2|MYBPC1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	513.804445	1025.59434	0.34194	0.00017569	1.4254	0.00073238	1.7673	0.00090807	513.8049857746306	86.933	0.94627	86.928	86.67	87.617	-0.0056229	-0.072336	-3.3933E-05	NaN	3.9444	99	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	682930	+		26253	18614	14932	14933							0.08256448127667682
LQKYYKVFE	9	Unmodified	_LQKYYKVFE_					0	0	0			REV__UBR1|p.S597Vfs*6|1|0.11|ENSG00000159459|chr15:43043276-43043277|-/T|frameshift_variant	REV__UBR1|p.S597Vfs*6|1|0.11|ENSG00000159459|chr15:43043276-43043277|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2386779785156	3	406.557013	1216.64921	-0.36479	-0.00014831	2.0912	0.00085018	1.7264	0.00070187	406.5579035620312	14.488	0.32691	14.422	14.261	14.588	-0.066068					17	11	2	0	0	0	0.25949	1	747	747		4.897	0	1	49418	+		26254	16855	14933	14934	32898	32898					0.049551581999367045
LQLEPLRK	8	Unmodified	_LQLEPLRK_					0	0	0		ENST00000465577.5_1_10:127477439-127486658:-|nuORF	ENST00000465577.5_1_10:127477439-127486658:-|nuORF	ENST00000465577.5_1_10:127477439-127486658:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.8008728027344	2	498.813659	995.612765	0.33084	0.00016503	-0.25956	-0.00012947	0.071275	3.5553E-05	498.81341608185807	21.6	0.22828	21.551	21.461	21.689	-0.049377					9	7	2	0	0	0	0.34414	1	2866	2866		2.0598	0	1	25041			26255	10801	14934	14935	32899	32899					0.114783260938907
LQLGRDIVC	9	Unmodified	_LQLGRDIVC_					0	0	0			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.6692199707031	2	508.781502	1015.54845	0.032406	1.6488E-05	-0.35497	-0.0001806	-0.32256	-0.00016411	508.7814624746362	18.213	0.38754	18.155	17.953	18.341	-0.058174					15	13	2	0	0	0	0.26031	1	1902	1902		3.5965	0	1	38657	+		26256	23219	14935	14936	32900	32900					0.04129802945431038
LQLIRNYV	8	Unmodified	_LQLIRNYV_					0	0	0		ENSG00000178409|ENST00000369042|BEND3	ENSG00000178409|ENST00000369042|BEND3	ENSG00000178409|ENST00000369042|BEND3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8043518066406	2	509.805834	1017.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.93	1	118.91	118.41	119.41	-0.024147								0	0	0	0.38004	1	30722	30722		0.69038	0	1				26257	7055	14936	14937	32901	32901					0.08902039576832976
LQLLATSLAPG	11	Unmodified	_LQLLATSLAPG_					0	0	0			REV__nc|ENSG00000161847|Q8IY67-2|RAVER1	REV__nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2623901367188	2	542.324057	1082.63356	0.1304	7.0717E-05	-2.3691	-0.0012848	-2.2387	-0.0012141	542.3226801321487	12.922	0.24316	12.922	12.815	13.058	0					15	8	2	0	0	0	0.32951	1	256	256		8.7454	2.0222	1	47836	+		26258	16951	14937	14938	32902	32902					0.0955487168291711
LQLLATSLAPG	11	Unmodified	_LQLLATSLAPG_					0	0	0			REV__nc|ENSG00000161847|Q8IY67-2|RAVER1	REV__nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2625122070312	2	542.324057	1082.63356	0.15169	8.2265E-05	-2.8149	-0.0015266	-2.6632	-0.0014443	542.322389004746	12.969	0.31076	12.901	12.791	13.102	-0.067495					15	10	2	0	0	0	0.33238	1	268	268		3.2813	0.54611	1	36466	+		26259	16951	14937	14938	32903	32903					0.0955487168291711
LQLLLWGHL	9	Unmodified	_LQLLLWGHL_					0	0	0		nc|ENSG00000271447|Q9H239-2|MMP28;ENSG00000271447|ENST00000605424|MMP28	nc|ENSG00000271447|Q9H239-2|MMP28	nc|ENSG00000271447|Q9H239-2|MMP28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2803955078125	2	546.831852	1091.64915	0.77774	0.00042529	-1.1681	-0.00063877	-0.39039	-0.00021348	546.8310394376842	55.771	0.39859	55.771	55.564	55.963	0					25	13	2	0	0	0	0.24913	1	13286	13286		12.532	1.7076	1	437810			26260	8696	14938	14939	32904	32904					0.10699202990599588
LQLLLWGHL	9	Unmodified	_LQLLLWGHL_					0	0	0		nc|ENSG00000271447|Q9H239-2|MMP28;ENSG00000271447|ENST00000605424|MMP28	nc|ENSG00000271447|Q9H239-2|MMP28	nc|ENSG00000271447|Q9H239-2|MMP28	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	546.831852	1091.64915	0.8755	0.00047875	-1.2222	-0.00066835	-0.34671	-0.00018959	546.8310012502402	55.776	0.3932	55.847	55.565	55.958	0.070889	0.040555	-3.3482E-05	NaN	12.532	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280110			26261	8696	14938	14939							0.10699202990599588
LQLLLWGHL	9	Unmodified	_LQLLLWGHL_					0	0	0		nc|ENSG00000271447|Q9H239-2|MMP28;ENSG00000271447|ENST00000605424|MMP28	nc|ENSG00000271447|Q9H239-2|MMP28	nc|ENSG00000271447|Q9H239-2|MMP28	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	546.831852	1091.64915	0.85689	0.00046858	-1.1796	-0.00064504	-0.3227	-0.00017646	546.831260227058	55.82	0.5418	55.801	55.536	56.078	-0.019077	-0.0049772	1.3134E-05	NaN	12.532	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	480700			26262	8696	14938	14939							0.10699202990599588
LQLMWSWQTQL	11	Unmodified	_LQLMWSWQTQL_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.92657470703125	3	478.579712	1432.71731	-0.047524	-2.2744E-05	2.5942	0.0012416	2.5467	0.0012188	478.580828326995	27.567	0.37645	27.567	27.324	27.7	0					20	12	2	0	0	0	0.3325	1	4648	4648		4.1166	1.6818	1	99021	+		26263	18023	14939	14940	32905	32905					0.018256597882782444
LQLMWSWQTQL	11	Unmodified	_LQLMWSWQTQL_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	478.579712	1432.71731	-0.016136	-7.7225E-06	2.6759	0.0012806	2.6598	0.0012729	478.9151705359688	27.501	0.3204	27.48	27.321	27.641	-0.02141	-0.039785	8.461E-05	NaN	4.1166	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96892	+		26264	18023	14939	14940							0.018256597882782444
LQLTRARN	8	Unmodified	_LQLTRARN_					0	0	0		ENST00000587377.5_1_16:4847463-4849700:-|nuORF;ENST00000588201.5_1_16:4847463-4848731:-|nuORF;ENSG00000067836|ENST00000322048|ROGDI	ENST00000587377.5_1_16:4847463-4849700:-|nuORF	ENST00000587377.5_1_16:4847463-4849700:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.29071044921875	2	486.290882	970.567212	-0.045335	-2.2046E-05	-0.046815	-2.2766E-05	-0.092149	-4.4811E-05	486.2907532012272	12.683	0.2951	12.584	12.433	12.729	-0.099291					16	9	2	0	0	0	0.44734	1	208	208		6.7232	0.96273	1	139480			26265	871	14940	14941	32906	32906					0.08075100631504029
LQLTRARN	8	Unmodified	_LQLTRARN_					0	0	0		ENST00000587377.5_1_16:4847463-4849700:-|nuORF;ENST00000588201.5_1_16:4847463-4848731:-|nuORF;ENSG00000067836|ENST00000322048|ROGDI	ENST00000587377.5_1_16:4847463-4849700:-|nuORF	ENST00000587377.5_1_16:4847463-4849700:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	486.290882	970.567212	-0.098292	-4.7798E-05	-0.16133	-7.8455E-05	-0.25963	-0.00012625	486.290722652264	12.652	0.28854	12.652	12.526	12.815	0	0.032964	-2.7561E-05	NaN	6.7232	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155520			26266	871	14940	14941							0.08075100631504029
LQLYLLVH	8	Unmodified	_LQLYLLVH_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8057861328125	2	499.805303	997.596052	0.54141	0.0002706	0.34203	0.00017095	0.88343	0.00044154	499.80539763755763	87.01	0.78947	87.01	86.649	87.439	0					76	32	3	0	0	0	0.39956	3	22882	22882;22930;22982		19.439	7.7987	1	641700	+		26267	13929	14941	14942	32907;32908;32909	32907					0.09715825207933904
LQLYLLVH	8	Unmodified	_LQLYLLVH_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2530517578125	2	499.805303	997.596052	0.54141	0.0002706	0.34203	0.00017095	0.88343	0.00044154	499.80539763755763	87.01	0.78947	87.01	86.649	87.439	0					76	32	3	0	0	0	0.3366	1	23015	23015		18.135	8.7875	1	641700	+		26268	13929	14941	14942	32910	32910					0.09715825207933904
LQLYLLVH	8	Unmodified	_LQLYLLVH_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.8056945800781	2	499.805303	997.596052	0.42129	0.00021057	0.40865	0.00020425	0.82995	0.00041481	499.80546825554285	86.846	0.93438	86.933	86.524	87.459	0.08709					71	39	2	0	0	0	0.35375	2	22830	22830;22876		24.674	9.8356	1	794080	+		26269	13929	14941	14942	32911;32912	32911					0.09715825207933904
LQLYLLVH	8	Unmodified	_LQLYLLVH_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.8056335449219	2	499.805303	997.596052	0.47757	0.00023869	0.39499	0.00019742	0.87255	0.00043611	499.80547880542247	86.945	0.89982	86.939	86.58	87.48	-0.0056229					67	37	2	0	0	0	0.39956	2	22862	22862;22960		19.439	8.6151	1	908640	+		26270	13929	14941	14942	32913;32914	32913					0.09715825207933904
LQMFQALKRP	10	Unmodified	_LQMFQALKRP_					0	0	0		ENST00000475971.5_1_7:893033-912965:+|nuORF;ENST00000413171.6_1_7:892397-912965:+|nuORF;nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1	ENST00000475971.5_1_7:893033-912965:+|nuORF	ENST00000475971.5_1_7:893033-912965:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8838806152344	3	411.237509	1230.6907	0.41406	0.00017028	2.4132	0.0009924	2.8273	0.0011627	411.2387550931036	20.179	0.39471	20.123	19.877	20.272	-0.055693					20	14	2	0	0	0	0.31969	1	2411	2411		5.7834	0	1	107060			26271	5881	14942	14943	32915	32915					0.08458015687619991
LQNADPLKV	9	Unmodified	_LQNADPLKV_					0	0	0		nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74	nc|ENSG00000019582|P04233-5|CD74	nc|ENSG00000019582|P04233-5|CD74	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.24017333984375	2	499.287474	996.560395	0.57671	0.00028794	-0.60082	-0.00029998	-0.024114	-1.204E-05	499.28689478931074	39.952	0.5098	40.044	39.803	40.313	0.09267					28	17	2	0	0	0	0.17263	1	8471	8471		38.615	15.878	1	242110			26272	502	14943	14944	32916	32916					0.061977429602734446
LQNADPLKV	9	Unmodified	_LQNADPLKV_					0	0	0		nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74	nc|ENSG00000019582|P04233-5|CD74	nc|ENSG00000019582|P04233-5|CD74	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	499.287474	996.560395	0.35978	0.00017963	-0.61304	-0.00030608	-0.25326	-0.00012645	499.28696478081844	40.102	0.50175	40.102	39.914	40.416	0	0.053062	8.8903E-06	NaN	38.615	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262880			26273	502	14943	14944							0.061977429602734446
LQNADPLKV	9	Unmodified	_LQNADPLKV_					0	0	0		nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74	nc|ENSG00000019582|P04233-5|CD74	nc|ENSG00000019582|P04233-5|CD74	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	499.287474	996.560395	0.40736	0.00020339	-0.64641	-0.00032274	-0.23904	-0.00011935	499.28712524317206	39.901	0.58012	40.001	39.788	40.368	0.099403	-0.04839	-2.4428E-05	NaN	38.615	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247950			26274	502	14943	14944							0.061977429602734446
LQNEPLPERL	10	Unmodified	_LQNEPLPERL_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.835205078125	2	604.83532	1207.65609	0.20945	0.00012668	-0.36846	-0.00022286	-0.15901	-9.6173E-05	604.8350531759121	46.336	0.84949	46.336	46.055	46.904	0					95	30	4	0	0	0	1.895E-13	4	10434	10391;10434;10487;10537		180.74	129.11	1	10482000			26275	3143	14944	14945	32917;32918;32919;32920	32918					0.060564710805238064
LQNEPLPERL	10	Unmodified	_LQNEPLPERL_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.8350219726562	2	604.83532	1207.65609	0.38895	0.00023525	-0.54157	-0.00032756	-0.15263	-9.2315E-05	604.8349288160506	46.209	0.87284	46.269	45.951	46.824	0.059837					97	31	4	0	0	0	6.1151E-14	4	10438	10339;10387;10438;10533		196.06	134.46	1	12355000			26276	3143	14944	14945	32921;32922;32923;32924	32923					0.060564710805238064
LQNEPLPERL	10	Unmodified	_LQNEPLPERL_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.288818359375	2	604.83532	1207.65609	0.49176	0.00029743	-0.13759	-8.3217E-05	0.35417	0.00021421	604.8353337747255	47.101	0.53327	47.154	46.846	47.379	0.05257					24	19	2	0	0	0	0.309	1	10615	10615		20.581	3.468	1	187340			26277	3143	14944	14945	32925	32925					0.060564710805238064
LQNEPLPERL	10	Unmodified	_LQNEPLPERL_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.8350219726562	2	604.83532	1207.65609	0.25751	0.00015575	-0.46229	-0.00027961	-0.20478	-0.00012386	604.835000171092	46.226	1.1274	46.291	45.976	47.104	0.065048					109	39	5	0	0	0	8.6705E-14	5	10390	10343;10390;10437;10490;10541		193.01	132.93	1	10846000			26278	3143	14944	14945	32926;32927;32928;32929;32930	32927					0.060564710805238064
LQNEPLPERL	10	Unmodified	_LQNEPLPERL_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.28857421875	2	604.83532	1207.65609	1.0303	0.00062313	-0.31255	-0.00018904	0.71771	0.00043409	604.8349413965879	47.195	0.21653	47.249	47.093	47.309	0.054371					10	7	2	0	0	0	0.31364	1	10666	10666		15.739	6.9932	1	216010			26279	3143	14944	14945	32931	32931					0.060564710805238064
LQNHVFPLF	9	Unmodified	_LQNHVFPLF_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8058471679688	2	557.805834	1113.59712	0.29254	0.00016318	0.27982	0.00015609	0.57236	0.00031927	557.8056726767735	69.043	1.2872	69.043	68.736	70.023	0					108	46	4	0	0	0	0.0061338	4	17406	17376;17406;17450;17463		85.357	38.436	1	1987600			26280	8284	14945	14946	32932;32933;32934;32935	32933					0.04486039576818257
LQNHVFPLF	9	Unmodified	_LQNHVFPLF_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.805908203125	2	557.805834	1113.59712	0.41916	0.00023381	0.29366	0.0001638	0.71281	0.00039761	557.8056471857428	68.964	1.4666	69.036	68.781	70.248	0.071938					112	52	4	0	0	0	0.013258	3	17375	17375;17401;17449		74.423	36.272	1	2095300			26281	8284	14945	14946	32936;32937;32938	32936					0.04486039576818257
LQNHVFPLF	9	Unmodified	_LQNHVFPLF_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.805908203125	2	557.805834	1113.59712	0.22755	0.00012693	0.5212	0.00029073	0.74874	0.00041765	557.80578787658	69.051	1.2939	69.032	68.79	70.084	-0.01915					115	46	4	0	0	0	0.013258	2	17407	17407;17455		74.423	27.502	1	2185900			26282	8284	14945	14946	32939;32940	32939					0.04486039576818257
LQNIIMMKK	9	Unmodified	_LQNIIMMKK_					0	0	0		ENST00000383744.8_1_3:44673993-44688118:+|nuORF	ENST00000383744.8_1_3:44673993-44688118:+|nuORF	ENST00000383744.8_1_3:44673993-44688118:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.82470703125	2	559.824855	1117.63516	0.15642	8.7565E-05	-0.25039	-0.00014017	-0.093973	-5.2609E-05	559.8248544469612	18.431	0.58194	18.313	18.065	18.647	-0.11739					40	19	3	0	0	0	0.31038	1	1969	1969		7.2892	1.5288	1	143940			26283	10015	14946	14947	32941	32941					0.08104466175655034
LQNKLMLP	8	Unmodified	_LQNKLMLP_					0	0	0			REV__ENST00000472011.5_1_1:235582749-235612074:+|nuORF	REV__ENST00000472011.5_1_1:235582749-235612074:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2711486816406	2	478.783513	955.552473	0.17082	8.1784E-05	4.279	0.0020487	4.4498	0.0021305	478.7855719996359	23.847	0.32032	23.774	23.614	23.935	-0.072559					14	10	2	0	0	0	0.34218	1	3606	3606		9.3474	0	1	50763	+		26284	21363	14947	14948	32942	32942					0.0729189243915016
LQNKLMLP	8	Unmodified	_LQNKLMLP_					0	0	0			REV__ENST00000472011.5_1_1:235582749-235612074:+|nuORF	REV__ENST00000472011.5_1_1:235582749-235612074:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	478.783513	955.552473	0.012093	5.7899E-06	4.4513	0.0021312	4.4634	0.002137	478.7855610755214	23.667	0.25732	23.667	23.542	23.8	0	-0.053616	4.8009E-05	NaN	9.3474	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46458	+		26285	21363	14947	14948							0.0729189243915016
LQNNTILRL	9	Unmodified	_LQNNTILRL_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A;ENST00000369144.7_1_10:120819204-120820315:-|nuORF	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3095703125	2	542.827298	1083.64004	0.71871	0.00039013	-0.62419	-0.00033883	0.09452	5.1308E-05	542.8270365491383	51.199	0.41247	51.209	51.016	51.428	0.0095634					23	15	2	0	0	0	0.24471	1	11895	11895		12.241	8.9593	1	201560			26286	2134	14948	14949	32943	32943					0.10156809634258934
LQNNTILRL	9	Unmodified	_LQNNTILRL_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A;ENST00000369144.7_1_10:120819204-120820315:-|nuORF	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	542.827298	1083.64004	0.62529	0.00033942	-0.34058	-0.00018488	0.28471	0.00015455	542.8269007483418	51.117	0.39218	51.164	51.037	51.429	0.046577	-0.019942	0.00019379	NaN	12.241	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234000			26287	2134	14948	14949							0.10156809634258934
LQNQKKVEF	9	Unmodified	_LQNQKKVEF_					0	0	0		ENSG00000010610|ENST00000011653|CD4;ENST00000437800.6_1_12:6898743-6924898:+|nuORF	ENSG00000010610|ENST00000011653|CD4	ENSG00000010610|ENST00000011653|CD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3302001953125	2	567.319306	1132.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.22	1	117.24	116.74	117.74	0.023476								0	0	0	0.25631	1	30393	30393		4.3292	0	1				26288	425	14949	14950	32944	32944					0.06305103397380662
LQNRRAGP	8	Unmodified	_LQNRRAGP_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7777404785156	2	456.262125	910.509697	-0.21633	-9.8702E-05	0.22345	0.00010195	0.0071244	3.2506E-06	456.2618832976044	13.328	0.16472	13.328	13.2	13.365	0					7	5	2	0	0	0	0.45307	1	371	371		4.756	0.81161	1	16284			26289	4432	14950	14951	32945	32945					0.05086258425933465
LQNSSARAL	9	Unmodified	_LQNSSARAL_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.L1152Sfs*20|1|0.31|ENSG00000065534|chr3:123692847-123692847|T/-|frameshift_variant;nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2671813964844	2	480.267073	958.519593	0.01597	7.6697E-06	0.065602	3.1507E-05	0.081572	3.9176E-05	480.26705561932744	23.548	0.75061	23.548	23.278	24.029	0					58	25	3	0	0	0	0.16283	1	3517	3517		29.082	0.59474	1	378250			26290	819	14951	14952	32946	32946					0.03867401640661683
LQPFASRLK	9	Unmodified	_LQPFASRLK_					0	0	0			REV__ENST00000372444.6_2_6:43445340-43446410:+|nuORF	REV__ENST00000372444.6_2_6:43445340-43446410:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.301025390625	2	530.319109	1058.62366	0.30571	0.00016212	-0.89442	-0.00047433	-0.58871	-0.0003122	530.3185019763764	23.354	0.58919	23.354	23.11	23.699	0					48	20	3	0	0	0	0.25989	1	3405	3405		14.838	0.93222	1	157680	+		26291	20412	14952	14953	32947	32947					0.09669728468156791
LQPFIYYRF	9	Unmodified	_LQPFIYYRF_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.8330688476562	2	623.834591	1245.65463	0.39292	0.00024512	-1.7361	-0.0010831	-1.3432	-0.00083794	623.8329273540317	71.809	0.89784	71.809	71.582	72.48	0					69	32	4	0	0	0	0.05341	2	18257	18257;18307		51.63	37.224	1	927330			26292	2239	14953	14954	32948;32949	32948					0.041628817823720965
LQPFIYYRF	9	Unmodified	_LQPFIYYRF_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.8327026367188	2	623.834591	1245.65463	0.10256	6.398E-05	-1.7938	-0.0011191	-1.6913	-0.0010551	623.8330459075239	71.757	0.6569	71.813	71.487	72.144	0.056572					56	23	3	0	0	0	0.069366	1	18269	18269		45.7	26.338	1	949090			26293	2239	14953	14954	32950	32950					0.041628817823720965
LQPFIYYRF	9	Unmodified	_LQPFIYYRF_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3351440429688	2	623.834591	1245.65463	0.28065	0.00017508	-1.5707	-0.00097988	-1.2901	-0.0008048	623.833158859149	71.892	0.82521	71.864	71.602	72.428	-0.027275					61	29	3	0	0	0	0.037019	2	18263	18263;18311		57.722	37.267	1	1079500			26294	2239	14953	14954	32951;32952	32951					0.041628817823720965
LQPGNCSL	8	Unmodified	_LQPGNCSL_					0	0	0		ENSG00000061918|ENST00000264424|GUCY1B1;nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5750732421875	2	416.205096	830.395638	-0.068871	-2.8665E-05	-0.32128	-0.00013372	-0.39015	-0.00016238	416.20487774109284	27.614	0.85186	27.592	27.215	28.067	-0.021412					67	29	3	0	0	0	0.31934	1	4817	4817		12.532	0	1	500290			26295	761	14954	14955	32953	32953					-0.02634392451182066
LQPIYMLARS	10	Unmodified	_LQPIYMLARS_					0	0	0			REV__ENST00000547519.1_1_12:112666581-112668655:-|nuORF	REV__ENST00000547519.1_1_12:112666581-112668655:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.7627563476562	2	596.331359	1190.64816	0.7618	0.00045428	-2.9388	-0.0017525	-2.177	-0.0012982	596.3296343154993	58.306	0.54497	58.289	58.005	58.55	-0.01704					25	18	2	0	0	0	0.31958	1	14194	14194		5.2969	1.3525	1	428440	+		26296	17756	14955	14956	32954	32954					0.06046620559391158
LQPKEYFQL	9	Unmodified	_LQPKEYFQL_					0	0	0		nc|ENSG00000131831|Q9Y5P3-2|RAI2;ENSG00000131831|ENST00000451717|RAI2	nc|ENSG00000131831|Q9Y5P3-2|RAI2	nc|ENSG00000131831|Q9Y5P3-2|RAI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3162841796875	2	583.316232	1164.61791	0.40268	0.00023489	-0.059972	-3.4983E-05	0.34271	0.00019991	583.316234912286	56.839	0.82056	56.839	56.555	57.376	0					64	30	3	0	0	0	0.12056	1	13670	13670		51.415	17.014	1	1270300			26297	3593	14956	14957	32955	32955					0.042185851658587126
LQPKEYFQL	9	Unmodified	_LQPKEYFQL_					0	0	0		nc|ENSG00000131831|Q9Y5P3-2|RAI2;ENSG00000131831|ENST00000451717|RAI2	nc|ENSG00000131831|Q9Y5P3-2|RAI2	nc|ENSG00000131831|Q9Y5P3-2|RAI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3167114257812	2	583.316232	1164.61791	0.41705	0.00024327	-0.088805	-5.1802E-05	0.32824	0.00019147	583.3162169760519	56.711	0.88673	56.79	56.543	57.43	0.078674					63	32	3	0	0	0	0.099099	1	13617	13617		47.594	18.513	1	1284800			26298	3593	14956	14957	32956	32956					0.042185851658587126
LQPKEYFQL	9	Unmodified	_LQPKEYFQL_					0	0	0		nc|ENSG00000131831|Q9Y5P3-2|RAI2;ENSG00000131831|ENST00000451717|RAI2	nc|ENSG00000131831|Q9Y5P3-2|RAI2	nc|ENSG00000131831|Q9Y5P3-2|RAI2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	583.316232	1164.61791	0.49613	0.0002894	0.021861	1.2752E-05	0.51799	0.00030215	583.3162534180238	57.005	0.55349	56.986	56.754	57.308	-0.019077	0.11446	7.5606E-05	NaN	47.594	53	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1120400			26299	3593	14956	14957							0.042185851658587126
LQPRSKKNIE	10	Unmodified	_LQPRSKKNIE_					0	0	0			REV__nc|ENSG00000142794|Q9H094-3|NBPF3	REV__nc|ENSG00000142794|Q9H094-3|NBPF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8567504882812	2	606.856586	1211.69862	0.26676	0.00016189	0.44266	0.00026863	0.70942	0.00043052	606.8568225375519	16.302	0.50051	16.188	15.921	16.421	-0.11434					27	16	3	0	0	0	0.39227	1	1285	1285		4.897	0.70751	1	55022	+		26300	16136	14957	14958	32957	32957					0.10123866208732579
LQPYLFHQF	9	Unmodified	_LQPYLFHQF_					0	0	0		nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000054356|Q16849-2|PTPRN;ENSG00000054356|ENST00000295718|PTPRN;ENST00000462351.5_1_2:220160899-220172331:-|nuORF	nc|ENSG00000054356|Q16849-3|PTPRN	nc|ENSG00000054356|Q16849-3|PTPRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.8114624023438	2	596.811116	1191.60768	0.65219	0.00038923	0.33566	0.00020032	0.98784	0.00058956	596.8112560840027	63.864	0.62322	63.864	63.665	64.288	0					40	22	3	0	0	0	0.24289	1	15831	15831		18.146	5.1039	1	418220			26301	687	14958	14959	32958	32958					0.01954022231257113
LQPYLFHQF	9	Unmodified	_LQPYLFHQF_					0	0	0		nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000054356|Q16849-2|PTPRN;ENSG00000054356|ENST00000295718|PTPRN;ENST00000462351.5_1_2:220160899-220172331:-|nuORF	nc|ENSG00000054356|Q16849-3|PTPRN	nc|ENSG00000054356|Q16849-3|PTPRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.8117065429688	2	596.811116	1191.60768	0.60944	0.00036372	0.25755	0.00015371	0.86698	0.00051743	596.8113961852822	63.901	0.46272	63.891	63.69	64.152	-0.0095291					38	16	3	0	0	0	0.19747	1	15825	15825		24.021	12.526	1	535600			26302	687	14958	14959	32959	32959					0.01954022231257113
LQPYLFHQF	9	Unmodified	_LQPYLFHQF_					0	0	0		nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000054356|Q16849-2|PTPRN;ENSG00000054356|ENST00000295718|PTPRN;ENST00000462351.5_1_2:220160899-220172331:-|nuORF	nc|ENSG00000054356|Q16849-3|PTPRN	nc|ENSG00000054356|Q16849-3|PTPRN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	596.811116	1191.60768	0.63204	0.00037721	0.37203	0.00022203	1.0041	0.00059924	596.8114605031038	63.714	0.44319	63.81	63.65	64.093	0.095722	-0.045068	4.3074E-05	NaN	24.021	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454930			26303	687	14958	14959							0.01954022231257113
LQQAKPVVV	9	Unmodified	_LQQAKPVVV_					0	0	0		nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54;nc|ENSG00000189308|Q6MZP7-2|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.7828063964844	2	491.30821	980.601866	0.49486	0.00024313	-0.69292	-0.00034044	-0.19806	-9.7308E-05	491.3077598987468	26.625	0.42987	26.603	26.381	26.811	-0.022238					20	14	2	0	0	0	0.24311	1	4379	4379		7.2892	0	1	86790			26304	7811	14959	14960	32960	32960					0.11078923719605882
LQQCPGQLCDK	11	Unmodified	_LQQCPGQLCDK_					0	0	0		ENST00000522760.5_1_5:169700986-169724717:-|nuORF	ENST00000522760.5_1_5:169700986-169724717:-|nuORF	ENST00000522760.5_1_5:169700986-169724717:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8840026855469	3	411.530252	1231.56893	0.32511	0.00013379	-1.657	-0.00068192	-1.3319	-0.00054813	411.8637889530828	19.878	0.41174	19.822	19.678	20.09	-0.055693					24	14	2	0	0	0	0.32736	1	2368	2368		4.1166	0	1	39092			26305	11504	14960	14961	32961	32961					-0.037593944570517124
LQQEPNSFFD	10	Unmodified	_LQQEPNSFFD_					0	0	0		ENST00000480195.1_1_X:24190859-24190928:+|nuORF;ZFX|p.V253Cfs*13|1|0.04|ENSG00000005889|chrX:24207435-24207435|G/-|frameshift_variant;ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX	ENST00000480195.1_1_X:24190859-24190928:+|nuORF	ENST00000480195.1_1_X:24190859-24190928:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.7816162109375	2	612.78021	1223.54587	0.52159	0.00031962	0.8167	0.00050046	1.3383	0.00082008	612.7806356791532	64.26	0.70098	64.26	64.026	64.727	0					44	25	2	0	0	0	0.34325	1	15952	15952		13.906	0.86358	1	765100			26306	347	14961	14962	32962	32962					-0.05696373978526026
LQQFFIKI	8	Unmodified	_LQQFFIKI_					0	0	0		ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;PBRM1|p.V1336Sfs*48|1|0.44|ENSG00000163939|chr3:52563363-52563363|C/-|frameshift_variant;PBRM1|p.L1349Wfs*35|1|0.38|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;PBRM1|p.P1339Lfs*45|1|0.24|ENSG00000163939|chr3:52563353-52563353|G/-|frameshift_variant;PBRM1|p.Q1346Rfs*38|1|0.15|ENSG00000163939|chr3:52563332-52563332|T/-|frameshift_variant;PBRM1|p.D1403Lfs*18|1|0.2|ENSG00000163939|chr3:52561847-52561848|TC/-|frameshift_variant;PBRM1|p.P1491Rfs*48|1|0.62|ENSG00000163939|chr3:52554861-52554861|G/-|frameshift_variant;PBRM1|p.V1505Lfs*34|1|0.32|ENSG00000163939|chr3:52554823-52554823|G/-|frameshift_variant;PBRM1|p.P1534Hfs*5|1|0.44|ENSG00000163939|chr3:52554732-52554732|G/-|frameshift_variant;PBRM1|p.Q1511Sfs*28|1|0.49|ENSG00000163939|chr3:52554802-52554802|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.L1564Wfs*32|1|0.68|ENSG00000163939|chr3:52550627-52550627|A/-|frameshift_variant;PBRM1|p.F1594Lfs*2|1|0.68|ENSG00000163939|chr3:52550536-52550536|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-9|PBRM1;PBRM1|p.Q1560Nfs*37|1|0.46|ENSG00000163939|chr3:52550749-52550750|-/TT|frameshift_variant;PBRM1|p.S1607Qfs*5|1|0.34|ENSG00000163939|chr3:52550499-52550499|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;PBRM1|p.F1216Yfs*3|1|0.2|ENSG00000163939|chr3:52576585-52576586|-/AT|frameshift_variant;PBRM1|p.K1293Nfs*20|1|0.2|ENSG00000163939|chr3:52563490-52563490|T/-|frameshift_variant;PBRM1|p.V1235Cfs*34|1|0.23|ENSG00000163939|chr3:52564222-52564222|C/-|frameshift_variant;PBRM1|p.E1222Kfs*5|2|0.51|ENSG00000163939|chr3:52576568-52576568|C/-|frameshift_variant;PBRM1|p.E1214Rfs*6|1|0.35|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.I1197Ffs*21|1|0.4|ENSG00000163939|chr3:52576643-52576643|T/-|frameshift_variant;PBRM1|p.I1073Lfs*86|1|0.27|ENSG00000163939|chr3:52586595-52586595|T/-|frameshift_variant;PBRM1|p.M1038Sfs*121|1|0.03|ENSG00000163939|chr3:52587363-52587363|A/-|frameshift_variant;PBRM1|p.P1135Lfs*24|1|0.12|ENSG00000163939|chr3:52579183-52579183|G/-|frameshift_variant;PBRM1|p.N1126Gfs*15|1|0.24|ENSG00000163939|chr3:52586432-52586436|AAGTT/-|frameshift_variant;PBRM1|p.A1104Gfs*3|1|0.37|ENSG00000163939|chr3:52586501-52586502|-/C|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.4|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;PBRM1|p.L993Mfs*20|1|0.61|ENSG00000163939|chr3:52587496-52587499|ACAA/-|frameshift_variant;PBRM1|p.W992Mfs*12|1|0.27|ENSG00000163939|chr3:52587502-52587503|-/T|frameshift_variant;PBRM1|p.K909Nfs*6|1|0.29|ENSG00000163939|chr3:52603573-52603573|T/-|frameshift_variant;PBRM1|p.G1161Afs*57|1|0.31|ENSG00000163939|chr3:52579107-52579107|A/-|frameshift_variant;ENST00000462207.1_1_3:52620428-52643468:-|nuORF	ENSG00000163939|ENST00000707071|PBRM1	ENSG00000163939|ENST00000707071|PBRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.3234252929688	2	518.813128	1035.6117	0.35142	0.00018232	-3.2938	-0.0017089	-2.9424	-0.0015266	518.8111984382678	70.38	0.2224	70.355	70.185	70.407	-0.024872					12	7	2	0	0	0	0.37937	1	17789	17789		21.747	2.3076	1	53624			26307	5762	14962	14963	32963	32963					0.09532111724979586
LQQFTPLK	8	Unmodified	_LQQFTPLK_					0	0	0			REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2504577636719	2	487.78711	973.559667	0.48026	0.00023427	-0.32228	-0.0001572	0.15798	7.7063E-05	487.7874642807574	51.369	1.4281	51.369	50.108	51.536	0					87	52	2	0	0	0	0.31302	1	11991	11991		22.736	6.8891	1	1685400	+		26308	22671	14963	14964	32964	32964					0.07182948311242399
LQQFTPLK	8	Unmodified	_LQQFTPLK_					0	0	0			REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2504577636719	2	487.78711	973.559667	0.34474	0.00016816	-0.53405	-0.0002605	-0.18931	-9.2344E-05	487.7874572173903	51.367	0.99126	51.413	50.604	51.595	0.046577					95	36	5	0	0	0	0.32537	1	11990	11990		18.146	2.2992	1	2349400	+		26309	22671	14963	14964	32965	32965					0.07182948311242399
LQQNMRKSQ	9	Unmodified	_LQQNMRKSQ_					0	0	0			REV__ENST00000485406.1_1_X:69516853-69516967:+|nuORF	REV__ENST00000485406.1_1_X:69516853-69516967:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.7963256835938	2	566.798214	1131.58188	0.18628	0.00010559	-2.9459	-0.0016697	-2.7596	-0.0015642	566.7960749069158	18.22	0.4004	18.102	17.957	18.358	-0.11739					23	13	2	0	0	0	0.33276	1	1885	1885		3.9444	0.3479	1	37357	+		26310	21542	14964	14965	32966	32966					0.02134804717343286
LQQQAAQAL	9	Unmodified	_LQQQAAQAL_					0	0	0		nc|ENSG00000182095|O15417-2|TNRC18;ENSG00000182095|ENST00000430969|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	nc|ENSG00000182095|O15417-2|TNRC18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2611083984375	2	485.769448	969.524344	0.29521	0.0001434	-0.7368	-0.00035792	-0.4416	-0.00021451	485.76913886586175	29.722	0.64129	29.734	29.532	30.173	0.012266					32	21	2	0	0	0	0.24581	1	5316	5316		16.942	0	1	123930			26311	7268	14965	14966	32967	32967					0.03836285783404492
LQQQKQQAVR	10	Unmodified	_LQQQKQQAVR_					0	0	0			REV__ENSG00000124356|ENST00000394070|STAMBP	REV__ENSG00000124356|ENST00000394070|STAMBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.851806640625	2	613.851835	1225.68912	0.084571	5.1914E-05	0.040511	2.4868E-05	0.12508	7.6782E-05	613.8519262934485	25.71	0.47982	25.71	25.445	25.925	0					32	16	3	0	0	0	0.34325	1	4117	4117		13.906	0.86358	1	300520	+		26312	15231	14966	14967	32968	32968					0.0853009792319881
LQQQKQQAVR	10	Unmodified	_LQQQKQQAVR_					0	0	0			REV__ENSG00000124356|ENST00000394070|STAMBP	REV__ENSG00000124356|ENST00000394070|STAMBP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	613.851835	1225.68912	0.084571	5.1914E-05	0.040511	2.4868E-05	0.12508	7.6782E-05	613.8519262934485	25.71	0.47982	25.71	25.445	25.925	0	0.0030036	5.8245E-05	NaN	13.906	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300520	+		26313	15231	14966	14967							0.0853009792319881
LQQQKQQAVR	10	Unmodified	_LQQQKQQAVR_					0	0	0			REV__ENSG00000124356|ENST00000394070|STAMBP	REV__ENSG00000124356|ENST00000394070|STAMBP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	613.851835	1225.68912	-0.054072	-3.3192E-05	-0.047637	-2.9242E-05	-0.10171	-6.2434E-05	613.8518263314244	25.721	0.48746	25.682	25.47	25.957	-0.038671	-0.02443	-4.9975E-05	NaN	13.906	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299450	+		26314	15231	14966	14967							0.0853009792319881
LQQQKQQAVR	10	Unmodified	_LQQQKQQAVR_					0	0	0			REV__ENSG00000124356|ENST00000394070|STAMBP	REV__ENSG00000124356|ENST00000394070|STAMBP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	613.851835	1225.68912	0.022518	1.3822E-05	-0.037192	-2.2831E-05	-0.014675	-9.0083E-06	613.8517768915892	25.751	0.46667	25.728	25.524	25.991	-0.022238	0.021426	-3.7152E-05	NaN	13.906	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348070	+		26315	15231	14966	14967							0.0853009792319881
LQQQQQRK	8	Unmodified	_LQQQQQRK_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.79931640625	2	528.799072	1055.58359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.923	1	13.818	13.318	14.318	-0.10466								0	0	0	0.37724	1	572	572		2.3027	0	1				26316	4338	14967	14968	32969	32969					0.05802181797616868
LQQRAGLVWWF	11	Unmodified	_LQQRAGLVWWF_					0	0	0		ENST00000261951.8_1_5:179921647-179956302:+|nuORF;ENST00000393356.5_1_5:179921647-179922490:+|nuORF	ENST00000261951.8_1_5:179921647-179956302:+|nuORF	ENST00000261951.8_1_5:179921647-179956302:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.27685546875	3	468.59094	1402.75099	0.10233	4.7951E-05	-0.85331	-0.00039985	-0.75098	-0.0003519	468.5905373821252	30.403	0.42437	30.403	30.194	30.619	0					23	14	2	0	0	0	0.33287	1	5532	5532		2.8433	0.4085	1	86149			26317	8980	14968	14969	32970	32970					0.06572449342365871
LQQRDHDGEK	10	Unmodified	_LQQRDHDGEK_					0	0	0		ENST00000483493.6_1_9:26892669-26892729:-|nuORF	ENST00000483493.6_1_9:26892669-26892729:-|nuORF	ENST00000483493.6_1_9:26892669-26892729:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5704650878906	3	409.202181	1224.58471	-0.23117	-9.4595E-05	-0.34159	-0.00013978	-0.57276	-0.00023437	409.2020358742869	25.781	0.54144	25.781	25.591	26.133	0					29	18	2	0	0	0	0.31629	1	4139	4139		8.9762	5.6566	1	128660			26318	11062	14969	14970	32971	32971					-0.018596486241676757
LQQSREARDE	10	Unmodified	_LQQSREARDE_					0	0	0		nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB;ENST00000576723.5_1_17:7843028-7852016:+|nuORF	nc|ENSG00000170037|Q8N137-5|CNTROB	nc|ENSG00000170037|Q8N137-5|CNTROB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8838806152344	3	411.205702	1230.59528	0.25687	0.00010563	1.5762	0.00064815	1.8331	0.00075378	411.20614781259786	19.762	0.38247	19.706	19.595	19.978	-0.055693					18	13	2	0	0	0	0.3179	1	2411	2411		8.9762	4.2603	1	24753			26319	6419	14970	14971	32972	32972					-0.010796659697234645
LQQTPTAF	8	Unmodified	_LQQTPTAF_					0	0	0			REV__ENST00000468507.1_1_1:157648751-157659660:-|nuORF	REV__ENST00000468507.1_1_1:157648751-157659660:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7501525878906	2	453.239993	904.465432	0.0077122	3.4955E-06	-0.30471	-0.00013811	-0.297	-0.00013461	453.2397134474798	59.525	0.3897	59.62	59.438	59.828	0.095089					20	13	2	0	0	0	0.34337	1	14449	14449		2.3027	1.778	1	249990	+		26320	21330	14971	14972	32973	32973					0.009378094890735156
LQQWHLDLVQL	11	Unmodified	_LQQWHLDLVQL_					0	0	0		ENSG00000113048|ENST00000261413|MRPS27;nc|ENSG00000113048|Q92552-2|MRPS27;ENST00000515226.5_1_5:71516738-71522904:-|nuORF	ENSG00000113048|ENST00000261413|MRPS27	ENSG00000113048|ENST00000261413|MRPS27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2748107910156	3	464.925988	1391.75613	-0.15139	-7.0384E-05	-1.4919	-0.00069363	-1.6433	-0.00076401	465.26009580015585	39.094	0.71505	39.186	38.862	39.577	0.09267					40	25	2	0	0	0	0.45629	1	8294	8294		3.8459	0.25885	1	285130			26321	2472	14972	14973	32974	32974					0.07592708414313165
LQQYYSHSN	9	Unmodified	_LQQYYSHSN_					0	0	0			REV__NCOA2|p.T530Yfs*39|1|0.04|ENSG00000140396|chr8:70156778-70156779|-/G|frameshift_variant	REV__NCOA2|p.T530Yfs*39|1|0.04|ENSG00000140396|chr8:70156778-70156779|-/G|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3141479492188	2	570.259445	1138.50434	0.46862	0.00026724	-0.25291	-0.00014422	0.21571	0.00012301	570.2591656146047	65.769	0.52213	65.769	65.458	65.981	0					28	18	2	0	0	0	0.24848	1	16464	16464		13.906	4.5229	1	190000	+		26322	23273	14973	14974	32975	32975					-0.059375099471935755
LQRARTVGRPS	11	Unmodified	_LQRARTVGRPS_					0	0	0			REV__nc|ENSG00000104343|Q96B02-3|UBE2W	REV__nc|ENSG00000104343|Q96B02-3|UBE2W	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.2142028808594	3	414.245944	1239.716	-0.076074	-3.1513E-05	-0.42806	-0.00017732	-0.50413	-0.00020883	414.24573150474356	17.529	0.55744	17.529	17.341	17.898	0					27	18	2	0	0	0	0.33236	1	1647	1647		4.4062	0	1	89457	+		26323	22924	14974	14975	32976	32976					0.10573206534400015
LQRDTVRQCK	10	Unmodified	_LQRDTVRQCK_					0	0	0		ENSG00000258472|ENST00000531839|unknown;nc|ENSG00000167524|Q96LW2-2|RSKR;nc|ENSG00000167524|Q96LW2-3|RSKR;nc|ENSG00000167524|Q96LW2|RSKR;ENSG00000167524|ENST00000301037|RSKR	ENSG00000258472|ENST00000531839|unknown	ENSG00000258472|ENST00000531839|unknown	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.2154846191406	3	416.227673	1245.66119	-0.12517	-5.2099E-05	0.21416	8.9139E-05	0.08899	3.704E-05	416.2275989450845	22.204	1.1114	22.204	21.763	22.875	0					53	39	2	0	0	0	0.38233	1	3091	3091		3.5871	0	1	122420			26324	8641	14975	14976	32977	32977					0.04818451671485491
LQRDYERSLS	10	Unmodified	_LQRDYERSLS_					0	0	0		ENSG00000102178|ENST00000369660|UBL4A;ENST00000477777.1_1_X:153713880-153714433:-|nuORF;ENST00000417913.1_1_X:153713880-153714888:-|nuORF	ENSG00000102178|ENST00000369660|UBL4A	ENSG00000102178|ENST00000369660|UBL4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8248291015625	2	633.825483	1265.63641	0.44162	0.00027991	-0.44008	-0.00027894	0.001541	9.7675E-07	633.8250376359338	100.15	0.6472	100.15	99.867	100.51	-0.006897					217	88	3	0	0	0	0.39009	1	26776	26776		5.2969	1.7098	1	327800			26325	1751	14976	14977	32978	32978					0.01422095069756324
LQRDYERSLS	10	Unmodified	_LQRDYERSLS_					0	0	0		ENSG00000102178|ENST00000369660|UBL4A;ENST00000477777.1_1_X:153713880-153714433:-|nuORF;ENST00000417913.1_1_X:153713880-153714888:-|nuORF	ENSG00000102178|ENST00000369660|UBL4A	ENSG00000102178|ENST00000369660|UBL4A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	633.825483	1265.63641	-0.062238	-3.9448E-05	-0.17883	-0.00011335	-0.24107	-0.0001528	633.8252199477857	100.16	0.6366	100.16	99.827	100.46	0	-0.00068571	0.00022166	NaN	5.2969	174	83	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234360			26326	1751	14976	14977							0.01422095069756324
LQREQRRC	8	Unmodified	_LQREQRRC_					0	0	0			REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7923583984375	2	544.790724	1087.56689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.45	1	115.45	114.95	115.95	0								0	0	0	0.37724	1	29920	29920		2.3027	0	1		+		26327	15539	14977	14978	32979	32979					0.026613576400222883
LQREQRRC	8	Unmodified	_LQREQRRC_					0	0	0			REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7913818359375	2	544.790724	1087.56689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.8	1	116.8	116.3	117.3	0								0	0	0	0.37724	1	30225	30225		2.3027	0	1		+		26328	15539	14977	14978	32980	32980					0.026613576400222883
LQREQRRC	8	Unmodified	_LQREQRRC_					0	0	0			REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7918701171875	2	544.790724	1087.56689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.34	1	117.34	116.84	117.84	0								0	0	0	0.37724	1	30348	30348		2.3027	0	1		+		26329	15539	14977	14978	32981	32981					0.026613576400222883
LQREQRRC	8	Unmodified	_LQREQRRC_					0	0	0			REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.79248046875	2	544.790724	1087.56689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.54	1	112.52	112.02	113.02	-0.015625								0	0	0	0.37724	1	29272	29272		2.3027	0	1		+		26330	15539	14977	14978	32982	32982					0.026613576400222883
LQREQRRC	8	Unmodified	_LQREQRRC_					0	0	0			REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7929077148438	2	544.790724	1087.56689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.24	1	117.21	116.71	117.71	-0.024147								0	0	0	0.37724	1	30353	30353		2.3027	0	1		+		26331	15539	14977	14978	32983	32983					0.026613576400222883
LQREQRRC	8	Unmodified	_LQREQRRC_					0	0	0			REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7916870117188	2	544.790724	1087.56689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.8	1	117.77	117.27	118.27	-0.024147								0	0	0	0.37724	1	30475	30475		2.3027	0	1		+		26332	15539	14977	14978	32984	32984					0.026613576400222883
LQREQRRC	8	Unmodified	_LQREQRRC_					0	0	0			REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.791748046875	2	544.790724	1087.56689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.29	1	118.32	117.82	118.82	0.026253								0	0	0	0.37724	1	30635	30635		2.3027	0	1		+		26333	15539	14977	14978	32985	32985					0.026613576400222883
LQREQRRC	8	Unmodified	_LQREQRRC_					0	0	0			REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7921142578125	2	544.790724	1087.56689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.45	1	119.47	118.97	119.97	0.027756								0	0	0	0.37724	1	30894	30894		2.3027	0	1		+		26334	15539	14977	14978	32986	32986					0.026613576400222883
LQRFREESI	9	Unmodified	_LQRFREESI_					0	0	0			REV__nc|ENSG00000174233|O43306-2|ADCY6	REV__nc|ENSG00000174233|O43306-2|ADCY6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.7826538085938	2	589.319837	1176.62512	0.39986	0.00023565	0.69254	0.00040813	1.0924	0.00064377	589.3203182197825	71.021	0.49979	71.021	70.683	71.183	0					22	17	2	0	0	0	0.25431	1	18044	18044		9.3831	0	1	319180	+		26335	17821	14978	14979	32987	32987					0.0438731776628174
LQRFREESI	9	Unmodified	_LQRFREESI_					0	0	0			REV__nc|ENSG00000174233|O43306-2|ADCY6	REV__nc|ENSG00000174233|O43306-2|ADCY6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.782470703125	2	589.319837	1176.62512	0.46368	0.00027326	0.85057	0.00050126	1.3142	0.00077451	589.3203163665861	71.035	0.44039	71.011	70.69	71.13	-0.024864					26	15	2	0	0	0	0.24848	1	18031	18031		13.906	1.6654	1	309380	+		26336	17821	14978	14979	32988	32988					0.0438731776628174
LQRGWEHK	8	Unmodified	_LQRGWEHK_					0	0	0			REV__ENST00000502677.1_1_5:80366283-80383248:+|nuORF	REV__ENST00000502677.1_1_5:80366283-80383248:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2901611328125	2	527.283057	1052.55156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.777	1	47.821	47.321	48.321	0.04332								0	0	0	0.27792	1	10867	10867		32.305	3.2239	1		+		26337	21720	14979	14980	32989	32989					0.027388141144683686
LQRHRHRHHRH	11	Unmodified	_LQRHRHRHHRH_					0	0	0		ENSG00000166546|ENST00000536005|BEAN1	ENSG00000166546|ENST00000536005|BEAN1	ENSG00000166546|ENST00000536005|BEAN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.278076171875	3	523.958013	1568.85221	-0.54958	-0.00028796	2.0331	0.0010653	1.4835	0.00077731	523.9594136695367	35.078	0.52049	35.153	34.933	35.454	0.075306					41	18	3	0	0	0	0.33347	1	6926	6926		0.45452	0	1	385560			26338	6093	14980	14981	32990	32990					0.09053758608297358
LQRKTCNLEK	10	Unmodified	_LQRKTCNLEK_					0	0	0		ENST00000463502.1_1_2:161993515-162036323:+|nuORF	ENST00000463502.1_1_2:161993515-162036323:+|nuORF	ENST00000463502.1_1_2:161993515-162036323:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8840026855469	3	411.564173	1231.67069	0.30686	0.00012629	3.6057	0.001484	3.9125	0.0016103	411.9001194167734	19.92	0.1157	19.864	19.788	19.904	-0.055693					5	3	2	0	0	0	0.31358	1	2368	2368		5.4027	0	1	13492			26339	10767	14981	14982	32991	32991					0.06412219956996523
LQRLAVVSK	9	Unmodified	_LQRLAVVSK_					0	0	0			REV__ENSG00000141384|ENST00000269142|TAF4B	REV__ENSG00000141384|ENST00000269142|TAF4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2435302734375	2	507.326934	1012.63931	0.017493	8.8746E-06	0.55783	0.000283	0.57532	0.00029187	507.32703163637035	34.251	0.3691	34.317	34.181	34.55	0.0667					20	12	2	0	0	0	0.2524	1	6785	6785		11.495	2.1116	1	111550	+		26340	16072	14982	14983	32992	32992					0.1335001498522388
LQRLPTTRT	9	Unmodified	_LQRLPTTRT_					0	0	0		ENST00000523160.1_1_8:74652013-74659542:-|nuORF	ENST00000523160.1_1_8:74652013-74659542:-|nuORF	ENST00000523160.1_1_8:74652013-74659542:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3252563476562	2	543.324922	1084.63529	0.54288	0.00029496	-0.4387	-0.00023836	0.10418	5.6601E-05	543.3247776217491	17.539	0.34651	17.478	17.33	17.676	-0.060429					23	11	3	0	0	0	0.33911	1	1668	1668		2.9952	0.26005	1	55134			26341	11506	14983	14984	32993	32993					0.09635925491488706
LQRPEIKL	8	Unmodified	_LQRPEIKL_					0	0	0		ENST00000502873.5_1_4:26585743-26755545:+|nuORF;ENSG00000109680|ENST00000264866|TBC1D19	ENST00000502873.5_1_4:26585743-26755545:+|nuORF	ENST00000502873.5_1_4:26585743-26755545:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7773132324219	2	498.813659	995.612765	0.47541	0.00023714	-0.12173	-6.0721E-05	0.35368	0.00017642	498.81362015585876	21.66	0.19115	21.56	21.443	21.635	-0.10034					9	6	2	0	0	0	0.34367	1	2887	2887		4.3292	0	1	22879			26342	2265	14984	14985	32994	32994					0.114783260938907
LQRPFCCRCS	10	Unmodified	_LQRPFCCRCS_					0	0	0			REV__ENST00000389048.7_2_2:30143287-30143704:-|nuORF	REV__ENST00000389048.7_2_2:30143287-30143704:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5526123046875	3	404.852672	1211.53619	-0.24983	-0.00010114	2.0242	0.00081952	1.7744	0.00071837	404.85366891604804	22.656	0.84278	22.611	22.294	23.137	-0.044865					63	29	4	0	0	0	0.31847	1	3119	3119		3.5871	0	1	143640	+		26343	20577	14985	14986	32995	32995					-0.06111880060916519
LQRPLIRYPMK	11	Unmodified	_LQRPLIRYPMK_					0	0	0			REV__ENSG00000161638|ENST00000293379|ITGA5	REV__ENSG00000161638|ENST00000293379|ITGA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2829895019531	3	472.28323	1413.82786	0.21255	0.00010038	0.1666	7.868E-05	0.37915	0.00017906	472.2829784465909	90.927	0.41351	91.018	90.816	91.229	0.090675					83	30	3	0	0	0	0.46704	1	24100	24100		2.4348	1.22	1	2407300	+		26344	16945	14986	14987	32996	32996					0.13749924567173366
LQRPLIRYPMK	11	Unmodified	_LQRPLIRYPMK_					0	0	0			REV__ENSG00000161638|ENST00000293379|ITGA5	REV__ENSG00000161638|ENST00000293379|ITGA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2833251953125	3	472.28323	1413.82786	0.36037	0.0001702	0.075147	3.5491E-05	0.43552	0.00020569	472.2830893523784	90.376	1.5236	90.377	89.843	91.366	0.00039673					396	114	5	0	0	0	0.33303	1	24136	24136		0.36667	0	1	3136100	+		26345	16945	14986	14987	32997	32997					0.13749924567173366
LQRQYRSP	8	Unmodified	_LQRQYRSP_					0	0	0		ENSG00000086015|ENST00000361297|MAST2	ENSG00000086015|ENST00000361297|MAST2	ENSG00000086015|ENST00000361297|MAST2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2877807617188	2	524.28834	1046.56213	0.54045	0.00028335	-1.2089	-0.00063382	-0.66846	-0.00035047	524.2876648496932	21.329	0.78773	21.329	21.108	21.896	0					42	27	2	0	0	0	0.34378	1	2839	2839		3.9444	0	1	64688			26346	1273	14987	14988	32998	32998					0.04070796768883156
LQRQYYRHL	9	Unmodified	_LQRQYYRHL_					0	0	0			REV__nc|ENSG00000186318|P56817-4|BACE1	REV__nc|ENSG00000186318|P56817-4|BACE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.58221435546875	3	426.235156	1275.68364	-0.099532	-4.2424E-05	-0.82499	-0.00035164	-0.92452	-0.00039406	426.23450559678145	19.383	0.7364	19.327	19.08	19.816	-0.055693					53	25	3	0	0	0	0.30459	1	2329	2329		8.1555	1.0538	1	203500	+		26347	18443	14988	14989	32999	32999					0.05682419131403549
LQRQYYRHL	9	Unmodified	_LQRQYYRHL_					0	0	0			REV__nc|ENSG00000186318|P56817-4|BACE1	REV__nc|ENSG00000186318|P56817-4|BACE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	426.235156	1275.68364	-0.27239	-0.0001161	-0.79547	-0.00033906	-1.0679	-0.00045516	426.234614432882	19.258	0.70497	19.258	18.895	19.6	0	-0.047017	-0.00012025	NaN	8.1555	66	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164700	+		26348	18443	14988	14989							0.05682419131403549
LQRQYYRHL	9	Unmodified	_LQRQYYRHL_					0	0	0			REV__nc|ENSG00000186318|P56817-4|BACE1	REV__nc|ENSG00000186318|P56817-4|BACE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	426.235156	1275.68364	-0.16936	-7.2188E-05	-0.47578	-0.00020279	-0.64514	-0.00027498	426.23461824320873	19.445	0.64354	19.33	19.086	19.729	-0.11592	0.024852	0.00028854	NaN	8.1555	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186620	+		26349	18443	14988	14989							0.05682419131403549
LQRQYYRHL	9	Unmodified	_LQRQYYRHL_					0	0	0			REV__nc|ENSG00000186318|P56817-4|BACE1	REV__nc|ENSG00000186318|P56817-4|BACE1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	426.235156	1275.68364	-0.099532	-4.2424E-05	-0.82499	-0.00035164	-0.92452	-0.00039406	426.23450559678145	19.383	0.7364	19.327	19.08	19.816	-0.055693	0.022165	-0.000158	NaN	8.1555	53	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203500	+		26350	18443	14988	14989							0.05682419131403549
LQRRWPTRR	9	Unmodified	_LQRRWPTRR_					0	0	0			REV__ENST00000482982.1_1_6:12957676-12957754:+|nuORF	REV__ENST00000482982.1_1_6:12957676-12957754:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.87548828125	2	634.875979	1267.73741	0.21503	0.00013652	-1.1048	-0.0007014	-0.88975	-0.00056488	634.8753323349639	18.434	0.50982	18.376	18.171	18.681	-0.058174					36	17	3	0	0	0	0.34681	1	1971	1971		1.8442	0	1	93531	+		26351	21515	14989	14990	33000	33000					0.11424636353763162
LQRSDDPHTF	10	Unmodified	_LQRSDDPHTF_					0	0	0		CON__Q05B55	CON__Q05B55	CON__Q05B55	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.8900146484375	3	405.863276	1214.568	-0.12184	-4.9449E-05	2.8624	0.0011617	2.7405	0.0011123	406.19896343617927	44.076	0.51261	44.076	43.793	44.306	0					28	18	3	0	0	0	0.3144	1	9691	9691		2.8433	0	1	196590		+	26352	222	14990	14991	33001	33001					-0.03070149510108422
LQRSDDPHTF	10	Unmodified	_LQRSDDPHTF_					0	0	0		CON__Q05B55	CON__Q05B55	CON__Q05B55	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.88995361328125	3	405.863276	1214.568	-0.0043658	-1.7719E-06	2.277	0.00092417	2.2727	0.0009224	405.8642554110161	43.697	0.41924	43.781	43.576	43.995	0.083996					27	15	2	0	0	0	0.31629	1	9571	9571		5.7834	1.9071	1	296460		+	26353	222	14990	14991	33002	33002					-0.03070149510108422
LQRSEAQLA	9	Unmodified	_LQRSEAQLA_					0	0	0			REV__ENSG00000081985|ENST00000674203|IL12RB2	REV__ENSG00000081985|ENST00000674203|IL12RB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.289794921875	2	508.28018	1014.54581	0.27951	0.00014207	0.060224	3.0611E-05	0.33973	0.00017268	508.2803170309777	21.902	0.53232	21.902	21.627	22.16	0					27	19	2	0	0	0	0.30064	1	3024	3024		8.7454	0.15213	1	109100	+		26354	13912	14991	14992	33003	33003					0.03911670812124157
LQRSQPPLL	9	Unmodified	_LQRSQPPLL_					0	0	0		nc|ENSG00000118094|O43280-2|TREH;ENSG00000118094|ENST00000264029|TREH	nc|ENSG00000118094|O43280-2|TREH	nc|ENSG00000118094|O43280-2|TREH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3187255859375	2	526.316566	1050.61858	0.31146	0.00016392	-0.74047	-0.00038972	-0.42901	-0.0002258	526.3159663896544	76.249	1.3654	76.249	75.565	76.931	0					121	49	3	0	0	0	0.16283	1	19538	19538		29.082	0	1	1667600			26355	2815	14992	14993	33004	33004					0.09529424605557324
LQRSQPPLL	9	Unmodified	_LQRSQPPLL_					0	0	0		nc|ENSG00000118094|O43280-2|TREH;ENSG00000118094|ENST00000264029|TREH	nc|ENSG00000118094|O43280-2|TREH	nc|ENSG00000118094|O43280-2|TREH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3191528320312	2	526.316566	1050.61858	0.53135	0.00027966	-1.2061	-0.0006348	-0.67477	-0.00035514	526.3157360476769	76.266	1.4029	76.234	75.588	76.991	-0.031479					125	51	3	0	0	0	0.18803	1	19491	19491		25.399	0	1	1741400			26356	2815	14992	14993	33005	33005					0.09529424605557324
LQRSRQVQNK	10	Unmodified	_LQRSRQVQNK_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.8627319335938	2	628.862734	1255.71092	0.072449	4.5561E-05	-0.07734	-4.8636E-05	-0.004891	-3.0757E-06	628.8627879107668	15.063	0.27694	15.063	15.012	15.289	0					19	9	3	0	0	0	0.40943	1	929	929		1.4819	0	1	51818			26357	2512	14993	14994	33006	33006					0.09328902671791184
LQSALKQFLDG	11	Unmodified	_LQSALKQFLDG_					0	0	0			REV__nc|ENSG00000186716|P11274-2|BCR	REV__nc|ENSG00000186716|P11274-2|BCR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.3378295898438	2	610.337695	1218.66084	0.3024	0.00018457	-0.38659	-0.00023595	-0.084187	-5.1383E-05	610.3373540680265	67.117	0.54259	67.117	66.937	67.479	0					35	18	3	0	0	0	0.37764	1	16890	16890		22.658	4.285	1	300340	+		26358	18463	14994	14995	33007	33007					0.06025355223277984
LQSGLPRPP	9	Unmodified	_LQSGLPRPP_					0	0	0		ENSG00000186895|ENST00000334134|FGF3	ENSG00000186895|ENST00000334134|FGF3	ENSG00000186895|ENST00000334134|FGF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7586669921875	2	482.782359	963.550165	0.36687	0.00017712	0.32969	0.00015917	0.69656	0.00033629	482.7826002920103	33.767	1.4348	33.767	33.011	34.446	0					92	51	3	0	0	0	0.24993	1	6389	6389		13.042	0	1	169540			26359	7653	14995	14996	33008	33008					0.06693180025695256
LQSHPQEVM	9	Unmodified	_LQSHPQEVM_					0	0	0		nc|ENSG00000011478|Q9NXS2-3|QPCTL;ENSG00000011478|ENST00000012049|QPCTL	nc|ENSG00000011478|Q9NXS2-3|QPCTL	nc|ENSG00000011478|Q9NXS2-3|QPCTL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.760009765625	2	534.760766	1067.50698	0.31144	0.00016655	-0.0048441	-2.5904E-06	0.3066	0.00016396	534.7602948126214	41.601	0.78014	41.691	41.378	42.158	0.090248					53	32	2	0	0	0	0.23007	1	9011	9011		19.257	1.1106	1	2984100			26360	12562	14996	14997	33009	33009					-0.024073778138927082
LQSITLPYRF	10	Unmodified	_LQSITLPYRF_					0	0	0			REV__ENSG00000178538|ENST00000317995|CA8	REV__ENSG00000178538|ENST00000317995|CA8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.211669921875	3	413.236163	1236.68666	-0.49068	-0.00020277	1.2248	0.00050611	0.73407	0.00030335	413.23634227505613	34.379	0.56847	34.379	34.104	34.672	0					39	19	4	0	0	0	0.31701	1	6749	6749		10.899	3.4219	1	167380	+		26361	18039	14997	14998	33010	33010					0.07778249465559384
LQSITLPYRF	10	Unmodified	_LQSITLPYRF_					0	0	0			REV__ENSG00000178538|ENST00000317995|CA8	REV__ENSG00000178538|ENST00000317995|CA8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.21185302734375	3	413.236163	1236.68666	-0.12134	-5.0143E-05	0.42609	0.00017607	0.30474	0.00012593	413.2361990696271	34.258	0.64169	34.325	34.127	34.769	0.066704					42	22	3	0	0	0	0.31899	1	6688	6688		7.4771	5.0423	1	161600	+		26362	18039	14997	14998	33011	33011					0.07778249465559384
LQSLKRSLEQA	11	Unmodified	_LQSLKRSLEQA_					0	0	0		ENST00000488203.1_1_12:120220270-120220447:-|nuORF	ENST00000488203.1_1_12:120220270-120220447:-|nuORF	ENST00000488203.1_1_12:120220270-120220447:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.8531494140625	2	636.867151	1271.71975	0.51117	0.00032555	2.0068	0.0012781	2.518	0.0016036	636.8684745108998	65.653	0.24908	65.653	65.545	65.795	0					10	8	2	0	0	0	0.19931	2	16374	16374;16426		31.268	1.4278	1	172210			26363	11132	14998	14999	33012;33013	33012					0.09475831517625011
LQSLKRSLEQA	11	Unmodified	_LQSLKRSLEQA_					0	0	0		ENST00000488203.1_1_12:120220270-120220447:-|nuORF	ENST00000488203.1_1_12:120220270-120220447:-|nuORF	ENST00000488203.1_1_12:120220270-120220447:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.8531494140625	2	636.867151	1271.71975	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.557	1	65.546	65.046	66.046	-0.011337								0	0	0	0.159	1	16350	16350		38.176	1.6694	1				26364	11132	14998	14999	33014	33014					0.09475831517625011
LQSTDGCRSQL	11	Unmodified	_LQSTDGCRSQL_					0	0	0		ENST00000265174.4_1_4:108552909-108553005:-|nuORF	ENST00000265174.4_1_4:108552909-108553005:-|nuORF	ENST00000265174.4_1_4:108552909-108553005:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.20684814453125	3	403.196038	1206.56629	-0.33849	-0.00013648	0.23022	9.2826E-05	-0.10827	-4.3654E-05	403.1965340167607	24.609	0.78589	24.578	24.286	25.072	-0.031408					50	26	3	0	0	0	0.32736	1	3785	3785		6.6235	0.84002	1	176090			26365	9040	14999	15000	33015	33015					-0.028735265903378604
LQTDQLEKRL	10	Unmodified	_LQTDQLEKRL_					0	0	0			REV__nc|ENSG00000127946|O00291-3|HIP1	REV__nc|ENSG00000127946|O00291-3|HIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.35400390625	2	622.353877	1242.6932	0.1406	8.7503E-05	0.075268	4.6843E-05	0.21587	0.00013435	622.3538522294168	37.202	0.78671	37.29	37.006	37.793	0.08741					74	28	4	0	0	0	0.11425	1	7607	7607		59.368	2.1193	1	1420100	+		26366	15355	15000	15001	33016	33016					0.08156142626262408
LQTDRIKHQL	10	Unmodified	_LQTDRIKHQL_					0	0	0			REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A	REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.9204406738281	3	417.910449	1250.70952	0.072427	3.0268E-05	-0.25478	-0.00010648	-0.18236	-7.6209E-05	417.91028594124447	40.681	0.64388	40.781	40.479	41.123	0.099407					53	23	3	0	0	0	0.35961	1	8657	8657		10.899	0	1	776940	+		26367	15964	15001	15002	33017	33017					0.0941926858304214
LQTHEQKL	8	Unmodified	_LQTHEQKL_					0	0	0			REV__ENSG00000198730|ENST00000361367|CTR9	REV__ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7766418457031	2	498.777274	995.539994	0.44521	0.00022206	-0.97738	-0.0004875	-0.53217	-0.00026544	498.77679119692664	21.327	0.49257	21.327	21.108	21.601	0					25	16	2	0	0	0	0.4354	1	2822	2822		10.824	0.75	1	104360	+		26368	18851	15002	15003	33018	33018					0.04204572300466225
LQTHEQKL	8	Unmodified	_LQTHEQKL_					0	0	0			REV__ENSG00000198730|ENST00000361367|CTR9	REV__ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7773132324219	2	498.777274	995.539994	0.52658	0.00026264	-0.84009	-0.00041902	-0.31351	-0.00015637	498.7765858368633	21.453	0.47442	21.353	21.16	21.635	-0.10034					32	16	3	0	0	0	0.45431	1	2887	2887		4.3292	0	1	101530	+		26369	18851	15002	15003	33019	33019					0.04204572300466225
LQTHEQKL	8	Unmodified	_LQTHEQKL_					0	0	0			REV__ENSG00000198730|ENST00000361367|CTR9	REV__ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7763366699219	2	498.777274	995.539994	0.39221	0.00019563	-1.0749	-0.00053613	-0.68267	-0.0003405	498.7766187939228	21.427	0.45432	21.377	21.15	21.604	-0.049377					26	15	2	0	0	0	0.44569	1	2829	2829		7.2892	1.0834	1	104220	+		26370	18851	15002	15003	33020	33020					0.04204572300466225
LQTKTAWK	8	Unmodified	_LQTKTAWK_					0	0	0			REV__ENST00000560291.2_1_15:52152484-52153489:-|nuORF	REV__ENST00000560291.2_1_15:52152484-52153489:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.28546142578125	2	488.284734	974.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.38	1	117.38	116.88	117.88	0								0	0	0	0.37277	1	30358	30358		4.3292	0	1		+		26371	22295	15003	15004	33021	33021					0.06662064168460802
LQTKTAWK	8	Unmodified	_LQTKTAWK_					0	0	0			REV__ENST00000560291.2_1_15:52152484-52153489:-|nuORF	REV__ENST00000560291.2_1_15:52152484-52153489:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2851867675781	2	488.284734	974.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.85	1	118.85	118.35	119.35	0								0	0	0	0.37277	1	30690	30690		4.3292	0	1		+		26372	22295	15003	15004	33022	33022					0.06662064168460802
LQTKTAWK	8	Unmodified	_LQTKTAWK_					0	0	0			REV__ENST00000560291.2_1_15:52152484-52153489:-|nuORF	REV__ENST00000560291.2_1_15:52152484-52153489:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2851867675781	2	488.284734	974.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.01	1	113.99	113.49	114.49	-0.019096								0	0	0	0.37277	1	29620	29620		4.3292	0	1		+		26373	22295	15003	15004	33023	33023					0.06662064168460802
LQTMNTLQAQL	11	Unmodified	_LQTMNTLQAQL_					0	0	0			REV__ENSG00000094975|ENST00000263688|SUCO	REV__ENSG00000094975|ENST00000263688|SUCO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.8919982910156	3	420.892067	1259.65437	-0.28272	-0.00011899	-0.24907	-0.00010483	-0.53178	-0.00022382	420.8919955720304	22.968	0.80444	22.968	22.675	23.48	0					69	27	4	0	0	0	0.3013	1	3307	3307		22.109	3.3877	1	284840	+		26374	14094	15004	15005	33024	33024					0.03493094000259589
LQTMNTLQAQL	11	Unmodified	_LQTMNTLQAQL_					0	0	0			REV__ENSG00000094975|ENST00000263688|SUCO	REV__ENSG00000094975|ENST00000263688|SUCO	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	420.892067	1259.65437	-0.0058181	-2.4488E-06	-0.73445	-0.00030912	-0.74027	-0.00031157	420.8918948450435	23.102	0.68087	23.057	22.789	23.47	-0.044867	0.045748	-0.0005795	NaN	22.109	66	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347540	+		26375	14094	15004	15005							0.03493094000259589
LQTRPSLIS	9	Unmodified	_LQTRPSLIS_					0	0	0		ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.274658203125	2	507.800749	1013.58694	-0.13032	-6.6176E-05	0.53772	0.00027305	0.4074	0.00020688	507.8009034327717	25.292	0.56214	25.261	24.953	25.515	-0.031408					46	19	3	0	0	0	0.24636	1	3985	3985		16.149	1.7437	1	130490			26376	6637	15005	15006	33025	33025					0.0806943185162936
LQTRPSLIS	9	Unmodified	_LQTRPSLIS_					0	0	0		ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.800749	1013.58694	0.23687	0.00012028	0.12704	6.4509E-05	0.36391	0.00018479	507.80070126052954	25.228	0.54603	25.228	24.958	25.504	0	-0.0018841	-0.00031781	NaN	21.537	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133320			26377	6637	15005	15006							0.0806943185162936
LQTRPSLIS	9	Unmodified	_LQTRPSLIS_					0	0	0		ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	507.800749	1013.58694	0.064203	3.2602E-05	0.60116	0.00030527	0.66537	0.00033787	507.8008229019435	25.257	0.51507	25.201	24.999	25.514	-0.055931	-0.02892	0.00016372	NaN	21.537	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159520			26378	6637	15005	15006							0.0806943185162936
LQTSQSKFS	9	Unmodified	_LQTSQSKFS_					0	0	0		ENST00000550219.1_1_9:131715080-131718643:+|nuORF	ENST00000550219.1_1_9:131715080-131718643:+|nuORF	ENST00000550219.1_1_9:131715080-131718643:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8370971679688	2	513.266739	1024.51892	-0.058568	-3.0061E-05	0.37869	0.00019437	0.32012	0.00016431	513.7668203998741	61.343	0.15286	61.44	61.354	61.507	0.096985					8	5	2	0	0	0	0.22596	1	15070	15070		10.824	2.0785	1	236530			26379	11795	15006	15007	33026	33026					0.007645622009476938
LQVESYIY	8	Unmodified	_LQVESYIY_					0	0	0		nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF	nc|ENSG00000152223|Q9HCE0-2|EPG5	nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.80267333984375	2	507.760758	1013.50696	0.221	0.00011222	0.47245	0.00023989	0.69345	0.00035211	507.7608349617046	75.816	0.78325	75.87	75.537	76.32	0.053413					63	27	3	0	0	0	0.34046	1	19403	19403		9.3474	0	1	1052500			26380	5007	15007	15008	33027	33027					0.0007494545774306971
LQVLPGETLHV	11	Unmodified	_LQVLPGETLHV_					0	0	0		ENST00000400075.3_1_21:27107784-27113886:+|nuORF;ENST00000487266.1_1_21:27107784-27117547:+|nuORF	ENST00000400075.3_1_21:27107784-27113886:+|nuORF	ENST00000400075.3_1_21:27107784-27113886:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.3463745117188	2	603.348063	1204.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.726	1	93.726	93.226	94.226	0								0	0	0	0.37609	1	24973	24973		2.4985	0.65425	1				26381	10183	15008	15009	33028	33028					0.08741945602923806
LQVNAGVEVTT	11	Unmodified	_LQVNAGVEVTT_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.8065795898438	2	565.806228	1129.5979	0.43663	0.00024705	1.2631	0.00071468	1.6998	0.00096173	565.8067559639458	21.871	0.70692	21.771	21.338	22.045	-0.10034					43	25	2	0	0	0	0.44828	1	2951	2951		4.897	0	1	147460	+		26382	15461	15009	15010	33029	33029					0.038287894352379226
LQVPEHTAF	9	Unmodified	_LQVPEHTAF_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.8164672851562	2	521.271824	1040.5291	0.52453	0.00027342	-0.94939	-0.00049489	-0.42485	-0.00022146	521.2713271367671	45.578	0.53379	45.643	45.248	45.782	0.065052					30	19	2	0	0	0	0.23784	1	10129	10129		13.906	0	1	228850			26383	6063	15010	15011	33030	33030					0.010451699261693648
LQVSRHKKF	9	Unmodified	_LQVSRHKKF_					0	0	0		ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32	ENSG00000146350|ENST00000398212|TBC1D32	ENSG00000146350|ENST00000398212|TBC1D32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.8433227539062	2	571.843282	1141.67201	0.1847	0.00010562	-0.11937	-6.8258E-05	0.065337	3.7363E-05	571.8431283921279	40.847	0.49238	40.847	40.576	41.069	0					44	17	3	0	0	0	0.28674	1	8800	8800		10.824	0	1	520090			26384	4706	15011	15012	33031	33031					0.10684222108079666
LQVSRPRE	8	Unmodified	_LQVSRPRE_					0	0	0			REV__ENST00000371088.4_1_1:63989202-63989241:+|nuORF	REV__ENST00000371088.4_1_1:63989202-63989241:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.78289794921875	2	492.78289	983.551228	0.02028	9.9936E-06	0.14108	6.9522E-05	0.16136	7.9516E-05	492.78283500888097	12.646	0.28854	12.646	12.526	12.815	0					14	9	2	0	0	0	0.45431	1	196	196		4.3292	0	1	60681	+		26385	20396	15012	15013	33032	33032					0.05879394394617066
LQWLMPVV	8	Unmodified	_LQWLMPVV_					0	0	0		chr10:89462624-89506310|321|10.73|0.6|4.16|-|1|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|72	chr10:89462624-89506310|321|10.73|0.6|4.16|-|1|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|72	chr10:89462624-89506310|321|10.73|0.6|4.16|-|1|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|72	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.28045654296875	2	493.280606	984.546659	0.1407	6.9403E-05	-0.74155	-0.00036579	-0.60085	-0.00029639	493.28023696849357	14.924	0.33649	14.814	14.618	14.955	-0.10981					27	11	3	0	0	0	0.34046	1	872	872		14.582	5.2343	1	244220			26386	120	15013	15014	33033	33033					0.05376793927496237
LQWLQKMEG	9	Unmodified	_LQWLQKMEG_					0	0	0		ENST00000441802.6_1_4:187541213-187541288:-|nuORF	ENST00000441802.6_1_4:187541213-187541288:-|nuORF	ENST00000441802.6_1_4:187541213-187541288:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.8106079101562	2	566.794609	1131.57467	0.064955	3.6816E-05	-3.0735	-0.001742	-3.0085	-0.0017052	566.7927442629305	12.776	0.31658	12.677	12.578	12.894	-0.09929					19	10	2	0	0	0	0.34681	1	272	272		1.8442	0.36234	1	30519			26387	10558	15014	15015	33034	33034					0.014140721169042081
LQWLQKMEG	9	Unmodified	_LQWLQKMEG_					0	0	0		ENST00000441802.6_1_4:187541213-187541288:-|nuORF	ENST00000441802.6_1_4:187541213-187541288:-|nuORF	ENST00000441802.6_1_4:187541213-187541288:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	566.794609	1131.57467	-0.088056	-4.991E-05	-3.4016	-0.001928	-3.4897	-0.0019779	566.7927322656136	12.749	0.25643	12.749	12.669	12.925	0	0.025571	-0.00027949	NaN	1.8442	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30108			26388	10558	15014	15015							0.014140721169042081
LQWLQKMEG	9	Unmodified	_LQWLQKMEG_					0	0	0		ENST00000441802.6_1_4:187541213-187541288:-|nuORF	ENST00000441802.6_1_4:187541213-187541288:-|nuORF	ENST00000441802.6_1_4:187541213-187541288:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	566.794609	1131.57467	0.064955	3.6816E-05	-3.0735	-0.001742	-3.0085	-0.0017052	566.7927442629305	12.776	0.31658	12.677	12.578	12.894	-0.09929	-0.046318	9.2545E-05	NaN	1.8442	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30519			26389	10558	15014	15015							0.014140721169042081
LQWLQKMEG	9	Unmodified	_LQWLQKMEG_					0	0	0		ENST00000441802.6_1_4:187541213-187541288:-|nuORF	ENST00000441802.6_1_4:187541213-187541288:-|nuORF	ENST00000441802.6_1_4:187541213-187541288:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	566.794609	1131.57467	-0.16589	-9.4025E-05	-2.8832	-0.0016342	-3.0491	-0.0017282	566.7929800472224	12.811	0.32606	12.744	12.61	12.936	-0.067496	0.020747	0.00030818	NaN	1.8442	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34464			26390	10558	15014	15015							0.014140721169042081
LQYEIPLPN	9	Unmodified	_LQYEIPLPN_					0	0	0			REV__nc|ENSG00000134278|Q08AE8-4|SPIRE1	REV__nc|ENSG00000134278|Q08AE8-4|SPIRE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.8191528320312	2	543.795132	1085.57571	0.58055	0.0003157	1.9848	0.0010793	2.5654	0.001395	543.7964110367575	40.558	1.312	40.657	39.868	41.18	0.099403					108	47	3	0	0	0	0.23784	1	8767	8767		13.906	0	1	1866600	+		26391	15663	15015	15016	33035	33035					0.03634609757477847
LQYIRMIAF	9	Unmodified	_LQYIRMIAF_					0	0	0		ENST00000345330.8_1_15:73852723-73852750:-|nuORF	ENST00000345330.8_1_15:73852723-73852750:-|nuORF	ENST00000345330.8_1_15:73852723-73852750:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.8231811523438	2	577.823169	1153.63179	0.38163	0.00022052	0.18323	0.00010588	0.56487	0.00032639	577.8232251513448	49.327	0.90953	49.327	48.883	49.793	0					84	32	3	0	0	0	0.20344	1	11373	11373		23.148	1.4018	1	816270			26392	9561	15016	15017	33036	33036					0.061115393933050655
LQYLLWLA	8	Unmodified	_LQYLLWLA_					0	0	0		ENST00000489601.1_1_2:235887520-235888204:+|nuORF	ENST00000489601.1_1_2:235887520-235888204:+|nuORF	ENST00000489601.1_1_2:235887520-235888204:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.75628662109375	2	510.299853	1018.58515	-0.18762	-9.574E-05	0.87277	0.00044537	0.68515	0.00034963	510.2997667058902	12.211	0.3624	12.143	11.951	12.313	-0.06806					21	15	3	0	0	0	0.34434	1	84	84		0.79363	0	1	34880			26393	11151	15017	15018	33037	33037					0.07660422833669145
LQYLLWLA	8	Unmodified	_LQYLLWLA_					0	0	0		ENST00000489601.1_1_2:235887520-235888204:+|nuORF	ENST00000489601.1_1_2:235887520-235888204:+|nuORF	ENST00000489601.1_1_2:235887520-235888204:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	510.299853	1018.58515	-0.036238	-1.8492E-05	1.135	0.00057918	1.0987	0.00056069	510.29991525679736	12.207	0.13773	12.207	12.135	12.273	0	0.054649	0.0011184	NaN	0.79363	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44877			26394	11151	15017	15018							0.07660422833669145
LQYLLWLA	8	Unmodified	_LQYLLWLA_					0	0	0		ENST00000489601.1_1_2:235887520-235888204:+|nuORF	ENST00000489601.1_1_2:235887520-235888204:+|nuORF	ENST00000489601.1_1_2:235887520-235888204:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	510.299853	1018.58515	0.0023425	1.1954E-06	-0.3207	-0.00016365	-0.31835	-0.00016246	510.29959500625915	12.204	0.26528	12.107	11.912	12.178	-0.096607	-0.045108	-0.00036729	NaN	0.79363	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45877			26395	11151	15017	15018							0.07660422833669145
LQYLNKLSMK	10	Unmodified	_LQYLNKLSMK_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2116394042969	3	413.237286	1236.69003	-0.29725	-0.00012283	-1.9739	-0.0008157	-2.2712	-0.00093854	413.23647048141237	34.283	0.63787	34.349	34.066	34.704	0.06636					49	22	3	0	0	0	0.31651	1	6753	6753		7.9454	0.46833	1	185680			26396	3583	15018	15019	33038	33038					0.08115176247906675
LQYQELTI	8	Unmodified	_LQYQELTI_					0	0	0			REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.8445129394531	2	504.274032	1006.53351	0.22832	0.00011514	-0.5689	-0.00028688	-0.34058	-0.00017174	504.27357230737556	73.829	1.2319	73.881	73.578	74.81	0.052361					99	42	4	0	0	0	0.31934	1	19129	19129		18.135	1.1927	1	2291200	+		26397	13936	15019	15020	33039	33039					0.030506343490856125
LQYSTDYTF	9	Unmodified	_LQYSTDYTF_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.2598876953125	2	569.258579	1136.50261	0.27649	0.00015739	1.4664	0.00083476	1.7429	0.00099215	569.2594861660594	68.399	1.4885	68.399	68.022	69.511	0					130	54	4	0	0	0	0.063853	1	17221	17221		47.749	1.7277	1	2150200			26398	1178	15020	15021	33040	33040					-0.060185637558106464
LQYVSRSEK	9	Unmodified	_LQYVSRSEK_					0	0	0			REV__ENST00000483617.5_2_2:131126744-131127839:+|nuORF	REV__ENST00000483617.5_2_2:131126744-131127839:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3126831054688	2	555.301113	1108.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.94	1	101.95	101.45	102.45	0.016685								0	0	0	0.23852	1	27168	27168		10.074	4.3421	1		+		26399	13756	15021	15022	33041	33041					0.03772226500677789
LRAPALLPLL	10	Unmodified	_LRAPALLPLL_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2946166992188	2	538.863152	1075.71175	0.20951	0.0001129	0.38251	0.00020612	0.59202	0.00031902	538.8631868145079	99.791	0.22325	99.83	99.706	99.929	0.038994					39	26	2	0	0	0	0.31629	1	26690	26690		10.074	0	1	95224			26400	12980	15022	15023	33042	33042					0.17692349058802392
LRAPALLPLLL	11	Unmodified	_LRAPALLPLLL_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.4052734375	2	595.405184	1188.79581	0.6771	0.00040315	0.25817	0.00015371	0.93527	0.00055686	595.4050905405293	83.832	0.88501	83.909	83.652	84.537	0.077095					84	36	3	0	0	0	0.35522	1	22041	22041		17.113	0	1	1155400			26401	12980	15023	15024	33043	33043					0.20896880155714825
LRAPALLPLLL	11	Unmodified	_LRAPALLPLLL_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.4051513671875	2	595.405184	1188.79581	0.61621	0.00036689	0.45974	0.00027373	1.076	0.00064063	595.4051600565065	83.94	0.63553	83.923	83.643	84.279	-0.016823					63	29	3	0	0	0	0.30767	1	22034	22034		21.537	0	1	1093300			26402	12980	15023	15024	33044	33044					0.20896880155714825
LRARELESL	9	Unmodified	_LRARELESL_					0	0	0			REV__nc|ENSG00000047648|O43182-5|ARHGAP6	REV__nc|ENSG00000047648|O43182-5|ARHGAP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8172607421875	2	543.81693	1085.61931	0.3849	0.00020932	-0.35217	-0.00019152	0.032728	1.7798E-05	543.8166688212796	26.073	0.44004	26.034	25.902	26.342	-0.038671					25	15	2	0	0	0	0.24467	1	4249	4249		17.113	0.1706	1	111070	+		26403	13545	15024	15025	33045	33045					0.07992219254606425
LRARELESL	9	Unmodified	_LRARELESL_					0	0	0			REV__nc|ENSG00000047648|O43182-5|ARHGAP6	REV__nc|ENSG00000047648|O43182-5|ARHGAP6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.81693	1085.61931	0.56896	0.00030941	-0.29713	-0.00016158	0.27183	0.00014782	543.8166705248499	26.158	0.49434	26.136	25.945	26.439	-0.022238	0.051614	-0.00012988	NaN	17.113	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102200	+		26404	13545	15024	15025							0.07992219254606425
LRARLLQQL	9	Unmodified	_LRARLLQQL_					0	0	0		ENST00000303596.2_1_16:67876399-67876546:+|nuORF	ENST00000303596.2_1_16:67876399-67876546:+|nuORF	ENST00000303596.2_1_16:67876399-67876546:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8587646484375	2	555.858932	1109.70331	0.072837	4.0487E-05	0.089904	4.9974E-05	0.16274	9.0461E-05	555.8589861226428	22.9	0.38186	22.9	22.763	23.145	0					20	12	2	0	0	0	0.34681	1	3271	3271		1.8442	0	1	55428			26405	9252	15025	15026	33046	33046					0.152847951422018
LRARLLQQL	9	Unmodified	_LRARLLQQL_					0	0	0		ENST00000303596.2_1_16:67876399-67876546:+|nuORF	ENST00000303596.2_1_16:67876399-67876546:+|nuORF	ENST00000303596.2_1_16:67876399-67876546:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	555.858932	1109.70331	0.11534	6.4112E-05	-0.058712	-3.2636E-05	0.056626	3.1476E-05	555.8588057314485	23.069	0.50806	22.981	22.762	23.27	-0.087608	-0.018723	0.00011794	NaN	1.8442	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72670			26406	9252	15025	15026							0.152847951422018
LRARLLQQL	9	Unmodified	_LRARLLQQL_					0	0	0		ENST00000303596.2_1_16:67876399-67876546:+|nuORF	ENST00000303596.2_1_16:67876399-67876546:+|nuORF	ENST00000303596.2_1_16:67876399-67876546:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	555.858932	1109.70331	0.18817	0.0001046	-0.57746	-0.00032098	-0.38929	-0.00021639	555.8584407581411	23.164	0.53749	23.12	22.847	23.385	-0.044867	0.11931	-0.00045876	NaN	1.8442	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61605			26407	9252	15025	15026							0.152847951422018
LRAYFRRRK	9	Unmodified	_LRAYFRRRK_					0	0	0			REV__ENST00000565493.1_1_20:34637734-34637854:-|nuORF	REV__ENST00000565493.1_1_20:34637734-34637854:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.9293212890625	3	422.594907	1264.76289	-0.45021	-0.00019026	-0.030267	-1.279E-05	-0.48048	-0.00020305	422.59473391182246	104.61	0.72551	104.61	104.3	105.02	0					231	101	3	0	0	0	0.34681	1	27749	27749		0.96228	0.33545	1	408270	+		26408	22357	15026	15027	33047	33047					0.14110110876208637
LRCASFSRLW	10	Unmodified	_LRCASFSRLW_					0	0	0		ENST00000221859.8_1_19:36605992-36606106:-|nuORF	ENST00000221859.8_1_19:36605992-36606106:-|nuORF	ENST00000221859.8_1_19:36605992-36606106:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.58367919921875	3	413.553609	1237.639	-0.37477	-0.00015499	0.39258	0.00016235	0.017807	7.3642E-06	413.5536068659056	35.435	0.2438	35.435	35.276	35.52	0					14	8	2	0	0	0	0.32051	1	7087	7087		3.8763	0	1	76311			26409	8834	15027	15028	33048	33048					0.029682719937227375
LRCHGCFKTT	10	Unmodified	_LRCHGCFKTT_					0	0	0		ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	ENSG00000141101|ENST00000268802|NOB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.2843017578125	2	583.283886	1164.55322	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.283	1	18.165	17.665	18.665	-0.11739								0	0	0	0.37807	1	1887	1887		2.9952	0.49676	1				26410	4356	15028	15029	33049	33049					-0.022476361834605996
LRCKELTTHF	10	Unmodified	_LRCKELTTHF_					0	0	0			REV__ENST00000328405.6_1_3:19189957-19190221:+|nuORF	REV__ENST00000328405.6_1_3:19189957-19190221:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.1827697753906	3	416.557019	1246.64923	-0.12175	-5.0714E-05	0.053555	2.2309E-05	-0.068191	-2.8405E-05	416.55712617994214	25.206	0.35575	25.206	25.12	25.475	0					15	11	2	0	0	0	0.32068	1	4022	4022		3.5871	0	1	30593	+		26411	20016	15029	15030	33050	33050					0.03576834928276185
LRCPFWMRC	9	Unmodified	_LRCPFWMRC_					0	0	0		ENST00000434221.5_1_22:28389243-28389507:+|nuORF	ENST00000434221.5_1_22:28389243-28389507:+|nuORF	ENST00000434221.5_1_22:28389243-28389507:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.2866821289062	2	606.285374	1210.5562	0.17826	0.00010808	2.2043	0.0013364	2.3825	0.0014445	606.2869633956102	15.181	0.30685	15.181	15.012	15.319	0					16	10	2	0	0	0	0.35563	1	976	976		0.52476	0.066424	1	34036			26412	10497	15030	15031	33051	33051					-0.040660843302930516
LRDFVSTRH	9	Unmodified	_LRDFVSTRH_					0	0	0			REV__ENST00000582734.1_1_19:40827791-40830098:-|nuORF	REV__ENST00000582734.1_1_19:40827791-40830098:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.2619018554688	2	565.806897	1129.59924	0.20196	0.00011427	0.10248	5.7985E-05	0.30444	0.00017226	565.806863948623	21.783	0.77447	21.734	21.316	22.09	-0.049377					58	27	3	0	0	0	0.3208	1	2898	2898		5.7319	0	1	149760	+		26413	16900	15031	15032	33052	33052					0.03962468314648504
LRDRPEAK	8	Unmodified	_LRDRPEAK_					0	0	0			REV__ENSG00000162676|ENST00000294702|GFI1	REV__ENSG00000162676|ENST00000294702|GFI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.67388916015625	2	492.78289	983.551228	0.15395	7.5865E-05	-0.85615	-0.0004219	-0.7022	-0.00034603	492.7824030759783	19.047	0.47947	19.047	18.814	19.294	0					26	16	2	0	0	0	0.34378	1	2096	2096		3.9444	0	1	64701	+		26414	16999	15032	15033	33053	33053					0.05879394394617066
LRDRTVQDTLK	11	Unmodified	_LRDRTVQDTLK_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.7774963378906	3	448.924647	1343.75211	0.11689	5.2477E-05	1.2859	0.00057726	1.4028	0.00062974	448.9246305638766	33.011	0.30776	33.011	32.895	33.202	0					19	10	2	0	0	0	0.33169	1	6390	6390		6.2344	0	1	91410			26415	5909	15033	15034	33054	33054					0.09398618920613444
LREAVSLTI	9	Unmodified	_LREAVSLTI_					0	0	0			REV__nc|ENSG00000135390|Q06055-2|ATP5MC2	REV__nc|ENSG00000135390|Q06055-2|ATP5MC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2906799316406	2	501.303124	1000.5917	0.58675	0.00029414	-0.056174	-2.816E-05	0.53058	0.00026598	501.3031827760254	79.377	1.0109	79.348	78.716	79.727	-0.028931					58	41	2	0	0	0	0.22215	2	20492	20396;20492		20.415	1.1575	1	119550	+		26416	22997	15034	15035	33055;33056	33056					0.09142315994370165
LREKIEEFREK	11	Unmodified	_LREKIEEFREK_					0	0	0			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.94366455078125	3	492.943819	1475.80963	0.29285	0.00014436	-0.24536	-0.00012095	0.047491	2.341E-05	492.9436817299195	24.771	0.96483	24.715	24.376	25.341	-0.055931					81	33	4	0	0	0	0.48173	1	3910	3910		0.50596	0	1	186200	+		26417	13908	15035	15036	33057	33057					0.09075461126144546
LREKIEEFREK	11	Unmodified	_LREKIEEFREK_					0	0	0			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.9438171386719	3	492.943819	1475.80963	0.055292	2.7256E-05	-0.17507	-8.6301E-05	-0.11978	-5.9045E-05	492.94377580067993	24.763	1.1435	24.732	24.4	25.543	-0.03141					90	39	3	0	0	0	0.47545	1	3887	3887		1.3296	0	1	268250	+		26418	13908	15035	15036	33058	33058					0.09075461126144546
LREKIEEFREK	11	Unmodified	_LREKIEEFREK_					0	0	0			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	492.943819	1475.80963	0.055292	2.7256E-05	-0.17507	-8.6301E-05	-0.11978	-5.9045E-05	492.94377580067993	24.763	1.1435	24.732	24.4	25.543	-0.03141	-0.0084052	0.00012212	NaN	1.3296	90	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268250	+		26419	13908	15035	15036							0.09075461126144546
LRELFGYL	8	Unmodified	_LRELFGYL_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7744140625	2	505.78711	1009.55967	0.22888	0.00011577	-2.0012	-0.0010122	-1.7723	-0.00089641	506.28784228623016	17.857	0.7621	17.857	17.507	18.269	0					60	21	4	0	0	0	0.45942	1	1822	1822		2.5775	0	1	188690			26420	3715	15036	15037	33059	33059					0.055269483112283524
LRELVAEFT	9	Unmodified	_LRELVAEFT_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B;nc|ENSG00000008869|Q9P2D3-2|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.786865234375	2	539.300581	1076.58661	0.75277	0.00040597	-3.4343	-0.0018521	-2.6816	-0.0014462	539.7989620208122	83.687	0.48587	83.687	83.399	83.885	0					36	17	3	0	0	0	0.24688	1	21900	21900		14.838	3.198	1	97593			26421	403	15037	15038	33060	33060					0.05138012131760661
LREPKVHIW	9	Unmodified	_LREPKVHIW_					0	0	0			REV__ZBTB43|p.A344Qfs*11|1|0.4|ENSG00000169155|chr9:126833539-126833539|G/-|frameshift_variant	REV__ZBTB43|p.A344Qfs*11|1|0.4|ENSG00000169155|chr9:126833539-126833539|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3433837890625	2	589.345658	1176.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.37	1	118.37	117.87	118.87	0								0	0	0	0.26704	1	30581	30581		0.6015	0	1		+		26422	17500	15038	15039	33061	33061					0.09549106250847217
LRERLTDL	8	Unmodified	_LRERLTDL_					0	0	0		nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1	nc|ENSG00000124181|P19174|PLCG1	nc|ENSG00000124181|P19174|PLCG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2986755371094	2	508.298373	1014.58219	0.29328	0.00014907	-0.45396	-0.00023075	-0.16068	-8.1674E-05	508.2981642518555	17.286	0.55925	17.286	17.069	17.628	0					47	19	3	0	0	0	0.46155	1	1661	1661		1.8442	0	1	99424			26423	3138	15039	15040	33062	33062					0.07548547708836395
LRERNKHL	8	Unmodified	_LRERNKHL_					0	0	0		ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	ENSG00000130038|ENST00000440314|CRACR2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3172607421875	2	533.317432	1064.62031	0.13956	7.4431E-05	-0.21966	-0.00011715	-0.080096	-4.2717E-05	533.31711127372	12.511	0.53848	12.511	12.245	12.783	0					25	17	2	0	0	0	0.46092	1	161	161		2.0598	0	1	56052			26424	3448	15040	15041	33063	33063					0.09058478414158344
LRESIHTIKL	10	Unmodified	_LRESIHTIKL_					0	0	0			REV__ENST00000513374.1_1_5:118729129-118729240:+|nuORF	REV__ENST00000513374.1_1_5:118729129-118729240:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.5667724609375	3	403.915312	1208.72411	-0.39319	-0.00015881	0.52986	0.00021402	0.13667	5.5204E-05	403.9155954274561	14.761	0.25062	14.761	14.649	14.9	0					18	8	3	0	0	0	0.32122	1	836	836		2.086	0	1	37386	+		26425	21824	15041	15042	33064	33064					0.12809340731178054
LRETETIIYR	10	Unmodified	_LRETETIIYR_					0	0	0			REV__ENST00000463300.1_1_2:55445673-55449583:-|nuORF	REV__ENST00000463300.1_1_2:55445673-55449583:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.3486328125	2	647.361702	1292.70885	0.29135	0.00018861	0.27017	0.0001749	0.56152	0.00036351	647.3625012696843	104.33	0.085487	104.34	104.3	104.38	0.0011444					12	10	2	0	0	0	0.32033	1	27744	27744		3.5965	0	1	188910	+		26426	17029	15042	15043	33065	33065					0.07420429143326146
LREVMLRKKH	10	Unmodified	_LREVMLRKKH_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-5|LMO7	REV__nc|ENSG00000136153|Q8WWI1-5|LMO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2675476074219	3	437.267691	1308.78124	0.17805	7.7857E-05	0.39299	0.00017184	0.57104	0.0002497	437.26784198715296	45.162	1.2523	45.162	44.552	45.805	0					182	45	5	0	0	0	0.4022	1	10248	10248		3.0723	0.81953	1	4340400	+		26427	15794	15043	15044	33066	33066					0.13920484735899663
LREVMLRKKH	10	Unmodified	_LREVMLRKKH_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-5|LMO7	REV__nc|ENSG00000136153|Q8WWI1-5|LMO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.267578125	3	437.267691	1308.78124	-0.12309	-5.3824E-05	0.34774	0.00015206	0.22465	9.8233E-05	437.26773201521036	45.995	1.6848	46.055	45.565	47.25	0.059834					200	61	5	0	0	0	0.4046	1	10508	10508		2.6312	2.6312	1	7201400	+		26428	15794	15043	15044	33067	33067					0.13920484735899663
LREVMLRKKH	10	Unmodified	_LREVMLRKKH_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-5|LMO7	REV__nc|ENSG00000136153|Q8WWI1-5|LMO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2674560546875	3	437.267691	1308.78124	0.10712	4.684E-05	0.013972	6.1093E-06	0.12109	5.2949E-05	437.2675831394804	45.96	1.6976	46.025	45.647	47.345	0.065048					200	60	5	0	0	0	0.4022	1	10453	10453		3.0723	0.44103	1	6723500	+		26429	15794	15043	15044	33068	33068					0.13920484735899663
LRFEIWFRRRR	11	Unmodified	_LRFEIWFRRRR_					0	0	0		ENSG00000153404|ENST00000637938|PLEKHG4B;ENST00000504041.1_1_5:169407-179718:+|nuORF	ENSG00000153404|ENST00000637938|PLEKHG4B	ENSG00000153404|ENST00000637938|PLEKHG4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.53662109375	4	409.493022	1633.94298	-0.11686	-4.7853E-05	3.9433	0.0016147	3.8264	0.0015669	409.74546989433935	28.8	0.23291	28.8	28.661	28.894	0.0004673					11	7	2	0	0	0	0.3333	1	5034	5034		0.45452	0.35968	1	32846			26430	5076	15044	15045	33069	33069					0.15136789813163887
LRFRLLRWWRR	11	Unmodified	_LRFRLLRWWRR_					0	0	0		ENST00000393313.5_1_7:127032353-127032743:-|nuORF	ENST00000393313.5_1_7:127032353-127032743:-|nuORF	ENST00000393313.5_1_7:127032353-127032743:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.90838623046875	4	415.256114	1656.99535	-0.02057	-8.5416E-06	3.3913	0.0014083	3.3707	0.0013997	415.25740559570073	24.717	0.11022	24.686	24.599	24.709	-0.031408					5	3	2	0	0	0	0.33351	1	3813	3813		0.094841	0.094841	1	13148			26431	10043	15045	15046	33070	33070					0.19313372946794516
LRFYCVILP	9	Unmodified	_LRFYCVILP_					0	0	0		ENST00000434077.1_1_6:41885641-41888819:-|nuORF;ENST00000482361.1_1_6:41877193-41888846:-|nuORF	ENST00000434077.1_1_6:41885641-41888819:-|nuORF	ENST00000434077.1_1_6:41885641-41888819:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3217163085938	2	562.320263	1122.62597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.3	1	96.377	95.877	96.877	0.077408								0	0	0	0.25352	1	25740	25740		5.2307	0.90143	1				26432	10496	15046	15047	33071	33071					0.06956440881617709
LRFYCVILP	9	Unmodified	_LRFYCVILP_					0	0	0		ENST00000434077.1_1_6:41885641-41888819:-|nuORF;ENST00000482361.1_1_6:41877193-41888846:-|nuORF	ENST00000434077.1_1_6:41885641-41888819:-|nuORF	ENST00000434077.1_1_6:41885641-41888819:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3220825195312	2	562.320263	1122.62597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.345	1	96.341	95.841	96.841	-0.0038147								0	0	0	0.25352	1	25763	25763		5.2307	0.90143	1				26433	10496	15046	15047	33072	33072					0.06956440881617709
LRGALRLP	8	Unmodified	_LRGALRLP_					0	0	0		ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.5145568847656	2	448.295436	894.57632	0.21626	9.6948E-05	-0.69807	-0.00031294	-0.48181	-0.00021599	448.29512195756445	29.721	0.41653	29.733	29.5	29.917	0.012264					19	13	2	0	0	0	0.344	1	5311	5311		2.5775	0	1	75125			26434	1490	15047	15048	33073	33073					0.12481493987820613
LRGHQGGWQSL	11	Unmodified	_LRGHQGGWQSL_					0	0	0		ENST00000272438.8_1_2:71215405-71215681:-|nuORF	ENST00000272438.8_1_2:71215405-71215681:-|nuORF	ENST00000272438.8_1_2:71215405-71215681:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.8951721191406	3	413.551144	1237.6316	-0.054563	-2.2565E-05	-1.4468	-0.00059831	-1.5013	-0.00062087	413.5504500880639	21.812	0.50729	21.812	21.459	21.966	0					38	18	3	0	0	0	0.41288	1	2928	2928		7.846	2.9537	1	113030			26435	9087	15048	15049	33074	33074					0.022292557176797345
LRGPALRLAG	10	Unmodified	_LRGPALRLAG_					0	0	0		nc|ENSG00000182010|Q8IZC4-2|RTKN2;ENSG00000182010|ENST00000373789|RTKN2;RTKN2|p.T151Qfs*10|1|0.11|ENSG00000182010|chr10:62239685-62239685|T/-|frameshift_variant;nc|ENSG00000182010|Q8IZC4-3|RTKN2	nc|ENSG00000182010|Q8IZC4-2|RTKN2	nc|ENSG00000182010|Q8IZC4-2|RTKN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.32421875	2	512.324725	1022.6349	0.28818	0.00014764	-0.35655	-0.00018267	-0.068369	-3.5027E-05	512.3246112790783	30.596	0.4313	30.624	30.409	30.841	0.027946					28	14	3	0	0	0	0.36786	1	5634	5634		9.3831	0.78985	1	136100			26436	7263	15049	15050	33075	33075					0.12448550562305627
LRGPHRAGF	9	Unmodified	_LRGPHRAGF_					0	0	0			REV__ENST00000447263.1_1_1:39980824-39982159:+|nuORF	REV__ENST00000447263.1_1_1:39980824-39982159:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7746887207031	2	505.785767	1009.55698	0.096447	4.8781E-05	0.37793	0.00019115	0.47438	0.00023993	505.78532343220206	18.079	0.78202	18.02	17.59	18.372	-0.058174					64	24	4	0	0	0	0.33276	1	1866	1866		3.9444	0.3479	1	175730	+		26437	21088	15050	15051	33076	33076					0.05258537696943222
LRGREKQR	8	Unmodified	_LRGREKQR_					0	0	0		nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8-3|UBR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8159790039062	2	521.815056	1041.61556	0.11219	5.8544E-05	1.023	0.0005338	1.1352	0.00059234	521.8155022840268	13.134	0.38375	13.134	12.952	13.336	0					33	13	4	0	0	0	0.43302	1	341	341		11.64	0.14559	1	221520			26438	12568	15051	15052	33077	33077					0.09641594271420217
LRGREKQR	8	Unmodified	_LRGREKQR_					0	0	0		nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8-3|UBR2	nc|ENSG00000024048|Q8IWV8-3|UBR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.8154907226562	2	521.815056	1041.61556	0.0051914	2.7089E-06	1.1984	0.00062533	1.2036	0.00062804	521.815596394095	13.218	0.39771	13.15	12.905	13.302	-0.067496					30	13	3	0	0	0	0.43302	1	361	361		11.64	2.2929	1	170060			26439	12568	15051	15052	33078	33078					0.09641594271420217
LRGRGRGWRTL	11	Unmodified	_LRGRGRGWRTL_					0	0	0		ENST00000302251.9_1_11:104034783-104035068:-|nuORF	ENST00000302251.9_1_11:104034783-104035068:-|nuORF	ENST00000302251.9_1_11:104034783-104035068:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.27581787109375	3	443.26545	1326.77452	0.41679	0.00018475	2.0785	0.00092132	2.4953	0.0011061	443.2661936164409	86.481	1.7139	86.481	85.282	86.996	0					118	66	4	0	0	0	0.4112	1	22918	22918		9.7643	2.2872	1	397490			26440	9232	15052	15053	33079	33079					0.12420307899537875
LRGRPKSL	8	Unmodified	_LRGRPKSL_					0	0	0			REV__ENST00000429755.8_1_17:46669689-46679621:+|nuORF	REV__ENST00000429755.8_1_17:46669689-46679621:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7977600097656	2	463.798343	925.582134	-0.81688	-0.00037887	-0.35456	-0.00016444	-1.1714	-0.00054331	463.7981770585352	34.988	0.8082	35.065	34.78	35.588	0.077377					77	28	4	0	0	0	0.33441	1	6981	6981		26.884	1.4843	1	2592500	+		26441	20936	15053	15054	33080	33080					0.11636592499519338
LRGVILDIHFL	11	Unmodified	_LRGVILDIHFL_					0	0	0		nc|ENSG00000033170|Q9BYC5-4|FUT8;nc|ENSG00000033170|Q9BYC5-3|FUT8;ENSG00000033170|ENST00000673929|FUT8	nc|ENSG00000033170|Q9BYC5-4|FUT8	nc|ENSG00000033170|Q9BYC5-4|FUT8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.59747314453125	3	432.599324	1294.77614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.669	1	98.663	98.163	99.163	-0.006897								0	0	0	0.37548	1	26437	26437		2.6312	1.3016	1				26442	559	15054	15055	33081	33081					0.14054504144928615
LRHFLAYG	8	Unmodified	_LRHFLAYG_					0	0	0			REV__nc|ENSG00000034533|Q2TB18-2|ASTE1	REV__nc|ENSG00000034533|Q2TB18-2|ASTE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7713928222656	2	488.771794	975.529036	0.095114	4.6489E-05	0.041282	2.0177E-05	0.1364	6.6666E-05	488.77132745865794	18.972	1.1325	18.972	18.299	19.431	0					83	39	3	0	0	0	0.45942	1	2087	2087		2.5775	0	1	256160	+		26443	13505	15055	15056	33082	33082					0.04029214716842944
LRHFLAYG	8	Unmodified	_LRHFLAYG_					0	0	0			REV__nc|ENSG00000034533|Q2TB18-2|ASTE1	REV__nc|ENSG00000034533|Q2TB18-2|ASTE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7716064453125	2	488.771794	975.529036	0.13885	6.7864E-05	0.10146	4.9593E-05	0.24031	0.00011746	488.7712595213955	19.111	1.046	18.993	18.414	19.46	-0.11739					96	36	4	0	0	0	0.45942	1	2190	2190		2.5775	0	1	279250	+		26444	13505	15055	15056	33083	33083					0.04029214716842944
LRHFLAYG	8	Unmodified	_LRHFLAYG_					0	0	0			REV__nc|ENSG00000034533|Q2TB18-2|ASTE1	REV__nc|ENSG00000034533|Q2TB18-2|ASTE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7712707519531	2	488.771794	975.529036	0.10089	4.9311E-05	0.13311	6.5058E-05	0.23399	0.00011437	488.7712577606468	19.075	1.0554	19.017	18.458	19.514	-0.058172					93	36	4	0	0	0	0.45942	1	2105	2105		2.5775	0	1	272460	+		26445	13505	15055	15056	33084	33084					0.04029214716842944
LRHLAAAK	8	Unmodified	_LRHLAAAK_					0	0	0		ENSG00000157184|ENST00000371486|CPT2	ENSG00000157184|ENST00000371486|CPT2	ENSG00000157184|ENST00000371486|CPT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.24237060546875	2	440.279786	878.54502	-0.072005	-3.1702E-05	-0.011924	-5.2499E-06	-0.083929	-3.6952E-05	440.27966220293075	22.627	0.26226	22.627	22.446	22.708	0					11	8	2	0	0	0	0.34408	1	3200	3200		2.3027	0	1	40182			26446	5286	15056	15057	33085	33085					0.10088920953739944
LRHLCCKI	8	Unmodified	_LRHLCCKI_					0	0	0		ENST00000450494.1_3_13:30127931-30160894:-|nuORF;ENST00000380752.9_1_13:30127931-30169822:-|nuORF	ENST00000450494.1_3_13:30127931-30160894:-|nuORF	ENST00000450494.1_3_13:30127931-30160894:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.27484130859375	2	493.275332	984.536111	0.10773	5.3143E-05	-2.5487	-0.0012572	-2.441	-0.0012041	493.27400940011086	15.604	0.39466	15.54	15.333	15.728	-0.064413					25	12	3	0	0	0	0.45307	1	1098	1098		4.756	0.42677	1	46785			26447	9986	15057	15058	33086	33086					0.04322488001412239
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.6080322265625	3	457.607825	1369.80165	0.088138	4.0333E-05	-0.41796	-0.00019126	-0.32982	-0.00015093	457.6080714875058	93.286	1.4437	93.373	92.522	93.965	0.08667					252	118	3	0	0	0	0.43198	2	24813	24813;24875		7.0371	4.4058	1	460720			26448	1036	15058	15059	33087;33088	33087					0.1315365539569484
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.608154296875	3	457.607825	1369.80165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.78	1	90.871	90.371	91.371	0.090668								0	0	0	0.34302	1	24067	24067		9.7643	3.1408	1				26449	1036	15058	15059	33089	33089					0.1315365539569484
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.6082763671875	3	457.607825	1369.80165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.914	1	91.005	90.505	91.505	0.090668								0	0	0	0.35543	1	24109	24109		7.0371	1.6344	1				26450	1036	15058	15059	33090	33090					0.1315365539569484
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.608154296875	3	457.607825	1369.80165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.038	1	91.129	90.629	91.629	0.090668								0	0	0	0.35543	1	24148	24148		7.0371	1.6344	1				26451	1036	15058	15059	33091	33091					0.1315365539569484
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.6082458496094	3	457.607825	1369.80165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.172	1	91.262	90.762	91.762	0.090668								0	0	0	0.35543	1	24188	24188		7.0371	2.9205	1				26452	1036	15058	15059	33092	33092					0.1315365539569484
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.6082458496094	3	457.607825	1369.80165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.297	1	91.388	90.888	91.888	0.090668								0	0	0	0.35543	1	24227	24227		7.0371	0.41363	1				26453	1036	15058	15059	33093	33093					0.1315365539569484
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.6081848144531	3	457.607825	1369.80165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.427	1	91.517	91.017	92.017	0.090668								0	0	0	0.35543	1	24267	24267		7.0371	1.6344	1				26454	1036	15058	15059	33094	33094					0.1315365539569484
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.608154296875	3	457.607825	1369.80165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.547	1	91.638	91.138	92.138	0.090668								0	0	0	0.3674	1	24305	24305		4.4062	0.28952	1				26455	1036	15058	15059	33095	33095					0.1315365539569484
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.608154296875	3	457.607825	1369.80165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.77	1	91.861	91.361	92.361	0.090668								0	0	0	0.37452	1	24374	24374		2.8433	0.21205	1				26456	1036	15058	15059	33096	33096					0.1315365539569484
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.60809326171875	3	457.607825	1369.80165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.915	1	92.006	91.506	92.506	0.090668								0	0	0	0.366	1	24419	24419		4.7159	2.0847	1				26457	1036	15058	15059	33097	33097					0.1315365539569484
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.6083068847656	3	457.607825	1369.80165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.979	1	92.07	91.57	92.57	0.090668								0	0	0	0.37452	1	24439	24439		2.8433	1.5136	1				26458	1036	15058	15059	33098	33098					0.1315365539569484
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.6082458496094	3	457.607825	1369.80165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.112	1	92.201	91.701	92.701	0.089195								0	0	0	0.37548	1	24480	24480		2.6312	1.3016	1				26459	1036	15058	15059	33099	33099					0.1315365539569484
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.6082763671875	3	457.607825	1369.80165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.014	1	88.011	87.511	88.511	-0.0028381								0	0	0	0.37548	1	23218	23218		2.6312	0	1				26460	1036	15058	15059	33100	33100					0.1315365539569484
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.6083068847656	3	457.607825	1369.80165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.156	1	88.153	87.653	88.653	-0.0028381								0	0	0	0.37548	1	23262	23262		2.6312	0.19645	1				26461	1036	15058	15059	33101	33101					0.1315365539569484
LRHLQAMKKFV	11	Unmodified	_LRHLQAMKKFV_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	457.607825	1369.80165	0.29143	0.00013336	-0.48952	-0.00022401	-0.19809	-9.0648E-05	457.6079850065095	93.291	1.3861	93.29	92.607	93.993	-0.00050354	-0.033435	-0.00010661	NaN	7.0371	241	116	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	426570			26462	1036	15058	15059							0.1315365539569484
LRHRLQWWRKF	11	Unmodified	_LRHRLQWWRKF_					0	0	0		ENST00000580893.5_1_17:62486773-62489133:-|nuORF;ENST00000585141.5_1_17:62481823-62493086:-|nuORF;ENSG00000256525|ENST00000539111|POLG2	ENST00000580893.5_1_17:62486773-62489133:-|nuORF	ENST00000580893.5_1_17:62486773-62489133:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5534362792969	4	407.237656	1624.92152	-0.21066	-8.5791E-05	-3.1298	-0.0012746	-3.3405	-0.0013604	407.2361670998187	31.569	0.54089	31.569	31.231	31.772	0					26	19	2	0	0	0	0.33351	1	5858	5858		0.094841	0	1	442430			26463	8627	15059	15060	33102	33102					0.13405404784452912
LRHRYRPK	8	Unmodified	_LRHRYRPK_					0	0	0			REV__nc|ENSG00000085224|P46100-6|ATRX	REV__nc|ENSG00000085224|P46100-6|ATRX	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3409423828125	2	563.341241	1124.66793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.45	1	111.45	110.95	111.95	0								0	0	0	0.38004	1	28985	28985		0.69038	0	1		+		26464	13956	15060	15061	33103	33103					0.11058177405016067
LRHRYRPK	8	Unmodified	_LRHRYRPK_					0	0	0			REV__nc|ENSG00000085224|P46100-6|ATRX	REV__nc|ENSG00000085224|P46100-6|ATRX	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.341552734375	2	563.341241	1124.66793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.76	1	112.74	112.24	113.24	-0.015625								0	0	0	0.38004	1	29325	29325		0.69038	0	1		+		26465	13956	15060	15061	33104	33104					0.11058177405016067
LRIIRFLPL	9	Unmodified	_LRIIRFLPL_					0	0	0		ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	ENSG00000162753|ENST00000367714|SLC9C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8850708007812	2	570.884419	1139.75428	0.33994	0.00019406	0.47051	0.00026861	0.81045	0.00046267	570.8846439098398	71.829	0.76903	71.802	71.537	72.306	-0.027275					62	27	3	0	0	0	0.1669	1	18265	18265		28.487	5.3384	1	387350			26466	5612	15061	15062	33105	33105					0.1899974418702186
LRIKKTEMK	9	Unmodified	_LRIKKTEMK_					0	0	0		ENST00000481837.1_1_20:19998833-20003229:+|nuORF	ENST00000481837.1_1_20:19998833-20003229:+|nuORF	ENST00000481837.1_1_20:19998833-20003229:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.8543090820312	2	573.855001	1145.69545	0.097152	5.5751E-05	0.16321	9.3657E-05	0.26036	0.00014941	573.8550373080612	22.08	1.0382	22.031	21.717	22.755	-0.049377					80	36	3	0	0	0	0.3208	1	3129	3129		5.7319	0.43497	1	697170			26467	11035	15062	15063	33106	33106					0.12842899830388887
LRIKSTPPLF	10	Unmodified	_LRIKSTPPLF_					0	0	0		ENST00000372428.8_1_X:106893283-106893325:+|nuORF	ENST00000372428.8_1_X:106893283-106893325:+|nuORF	ENST00000372428.8_1_X:106893283-106893325:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.2252197265625	2	586.363516	1170.71248	0.3068	0.0001799	-0.042387	-2.4854E-05	0.26442	0.00015504	586.3633272209325	67.37	0.71395	67.448	67.183	67.897	0.078041					67	24	4	0	0	0	0.318	1	17019	17019		7.2892	0.56607	1	1085300			26468	9841	15063	15064	33107	33107					0.13395143707839452
LRISCFWR	8	Unmodified	_LRISCFWR_					0	0	0		ENST00000367478.8_1_1:186329076-186329121:-|nuORF	ENST00000367478.8_1_1:186329076-186329121:-|nuORF	ENST00000367478.8_1_1:186329076-186329121:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7919311523438	2	540.792204	1079.56985	0.47848	0.00025876	0.22447	0.00012139	0.70294	0.00038015	540.7921266001007	71.106	0.71944	71.166	70.772	71.491	0.060783					31	25	2	0	0	0	0.33993	1	18076	18076		11.64	0	1	619370			26469	9737	15064	15065	33108	33108					0.033252327648142455
LRKERFERRQR	11	Unmodified	_LRKERFERRQR_					0	0	0			REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3099365234375	3	525.309718	1572.90732	0.32032	0.00016826	-0.0041098	-2.1589E-06	0.31621	0.00016611	525.3096001955155	95.146	1.0073	95.146	94.352	95.359	0					275	91	4	0	0	0	0.48212	1	25436	25436		0.45452	0	1	746430	+		26470	14424	15065	15066	33109	33109					0.1437870756551547
LRKERFERRQR	11	Unmodified	_LRKERFERRQR_					0	0	0			REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.309814453125	3	525.309718	1572.90732	0.35525	0.00018662	0.059549	3.1282E-05	0.4148	0.0002179	525.3096652742355	95.861	2.1594	95.938	94.551	96.71	0.077408					569	196	4	0	0	0	0.47853	1	25547	25547		0.92553	0.55886	1	1130000	+		26471	14424	15065	15066	33110	33110					0.1437870756551547
LRKERFERRQR	11	Unmodified	_LRKERFERRQR_					0	0	0			REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3099975585938	3	525.309718	1572.90732	0.55958	0.00029395	-0.082352	-4.326E-05	0.47723	0.00025069	525.3096041725858	95.918	1.503	95.914	95.267	96.77	-0.0038147					424	147	4	0	0	0	0.47713	3	25590	25590;25631;25746		1.1098	0.18422	1	996780	+		26472	14424	15065	15066	33111;33112;33113	33111					0.1437870756551547
LRKERFERRQR	11	Unmodified	_LRKERFERRQR_					0	0	0			REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7974243164062	3	525.309718	1572.90732	0.58626	0.00030797	-0.16755	-8.8018E-05	0.4187	0.00021995	525.309517345692	95.081	0.68731	95.079	94.674	95.362	-0.0020142					182	61	4	0	0	0	0.33347	1	25447	25447		0.08335	0	1	671730	+		26473	14424	15065	15066	33114	33114					0.1437870756551547
LRKHSTLL	8	Unmodified	_LRKHSTLL_					0	0	0			REV__nc|ENSG00000130826|O60832-2|DKC1	REV__nc|ENSG00000130826|O60832-2|DKC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7852478027344	2	484.306001	966.597449	-0.11857	-5.7422E-05	0.34212	0.00016569	0.22355	0.00010827	484.30601608267733	13.125	0.16938	13.125	12.977	13.147	0					7	5	2	0	0	0	0.34408	1	292	292		2.3027	0	1	15549	+		26474	15484	15066	15067	33115	33115					0.11281459296708363
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3701782226562	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.86	1	110.86	110.36	111.36	0								0	0	0	0.264	1	28879	28879		1.8442	0	1				26475	2253	15067	15068	33116	33116					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3685913085938	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.88	1	114.88	114.38	115.38	0								0	0	0	0.26734	1	29791	29791		0.45834	0	1				26476	2253	15067	15068	33117	33117					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.37060546875	2	606.372207	1210.72986	0.062531	3.7917E-05	-1.9005	-0.0011524	-1.838	-0.0011145	606.3713121428015	119.04	0.04023	119.04	119.02	119.06	0					7	4	2	0	0	0	0.26262	1	30736	30736		0.45834	0	1	16090			26477	2253	15067	15068	33118	33118					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3695068359375	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.29	1	110.28	109.78	110.78	-0.01236								0	0	0	0.264	1	28795	28795		1.8442	0	1				26478	2253	15067	15068	33119	33119					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3698120117188	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.29	1	111.28	110.78	111.78	-0.013939								0	0	0	0.264	1	28967	28967		1.8442	0	1				26479	2253	15067	15068	33120	33120					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3706665039062	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.79	1	113.77	113.27	114.27	-0.017303								0	0	0	0.26734	1	29568	29568		0.45834	0	1				26480	2253	15067	15068	33121	33121					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3716430664062	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.54	1	115.52	115.02	116.02	-0.020988								0	0	0	0.26734	1	29959	29959		0.45834	0	1				26481	2253	15067	15068	33122	33122					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3720092773438	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.42	1	118.4	117.9	118.9	-0.024147								0	0	0	0.26734	1	30610	30610		0.45834	0	1				26482	2253	15067	15068	33123	33123					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3700561523438	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.953	1	88.953	88.453	89.453	-0.00080872								0	0	0	0.25631	1	23507	23507		4.3292	0	1				26483	2253	15067	15068	33124	33124					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3706665039062	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.996	1	90.996	90.496	91.496	0.00046539								0	0	0	0.25631	1	24133	24133		4.3292	0	1				26484	2253	15067	15068	33125	33125					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3705444335938	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.684	1	91.685	91.185	92.185	0.00046539								0	0	0	0.25631	1	24347	24347		4.3292	0	1				26485	2253	15067	15068	33126	33126					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.37109375	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.852	1	91.852	91.352	92.352	0.00046539								0	0	0	0.264	1	24399	24399		1.8442	0	1				26486	2253	15067	15068	33127	33127					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3701171875	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.807	1	97.8	97.3	98.3	-0.0068283								0	0	0	0.264	1	26190	26190		1.8442	0	1				26487	2253	15067	15068	33128	33128					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3697509765625	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.939	1	97.932	97.432	98.432	-0.0068283								0	0	0	0.264	1	26228	26228		1.8442	0	1				26488	2253	15067	15068	33129	33129					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.369873046875	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.32	1	111.33	110.83	111.83	0.01152								0	0	0	0.2575	1	28995	28995		3.9444	0	1				26489	2253	15067	15068	33130	33130					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.370849609375	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.84	1	111.86	111.36	112.36	0.0131								0	0	0	0.264	1	29115	29115		1.8442	0	1				26490	2253	15067	15068	33131	33131					0.13292484033513574
LRKLLHRFE	9	Unmodified	_LRKLLHRFE_					0	0	0		INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant;ENSG00000109452|ENST00000262992|INPP4B	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3701782226562	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.97	1	111.98	111.48	112.48	0.0131								0	0	0	0.264	1	29148	29148		1.8442	0	1				26491	2253	15067	15068	33132	33132					0.13292484033513574
LRKPCKGSSAL	11	Unmodified	_LRKPCKGSSAL_					0	0	0			REV__ENST00000281092.8_1_5:108531602-108531716:+|nuORF	REV__ENST00000281092.8_1_5:108531602-108531716:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3338623046875	2	580.334433	1158.65431	0.32287	0.00018737	-1.8361	-0.0010655	-1.5132	-0.00087816	580.3333623433139	91.072	0.42671	91.163	91.11	91.537	0.090668					46	32	2	0	0	0	0.44523	2	24173	24173;24214		5.2969	1.7004	1	460340	+		26492	19710	15068	15069	33133;33134	33133					0.08133138790913108
LRKPCKGSSAL	11	Unmodified	_LRKPCKGSSAL_					0	0	0			REV__ENST00000281092.8_1_5:108531602-108531716:+|nuORF	REV__ENST00000281092.8_1_5:108531602-108531716:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8353881835938	2	580.334433	1158.65431	0.32287	0.00018737	-1.8361	-0.0010655	-1.5132	-0.00087816	580.3333623433139	91.072	0.42671	91.163	91.11	91.537	0.090668					46	32	2	0	0	0	0.3327	1	24214	24214		2.7352	0.89096	1	460340	+		26493	19710	15068	15069	33135	33135					0.08133138790913108
LRLARKLG	8	Unmodified	_LRLARKLG_					0	0	0			REV__ENST00000228345.9_1_12:1034631-1039134:-|nuORF	REV__ENST00000228345.9_1_12:1034631-1039134:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7581481933594	2	463.816536	925.618519	-0.17909	-8.3065E-05	0.079969	3.7091E-05	-0.099121	-4.5974E-05	463.8164936114059	23.076	0.31173	22.988	22.853	23.165	-0.087608					17	10	2	0	0	0	0.34337	1	3335	3335		5.2307	0	1	45821	+		26494	19445	15069	15070	33136	33136					0.15273469396231576
LRLLYILCYI	10	Unmodified	_LRLLYILCYI_					0	0	0			REV__ENST00000360612.4_1_22:50357064-50357445:+|nuORF	REV__ENST00000360612.4_1_22:50357064-50357445:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8821411132812	2	641.883227	1281.7519	0.13383	8.5903E-05	-0.90814	-0.00058292	-0.77431	-0.00049702	641.8824397631346	96.311	0.623	96.311	95.906	96.529	0					95	59	2	0	0	0	0.41642	1	25745	25745		0.45834	0.057624	1	111820	+		26495	20262	15070	15071	33137	33137					0.12229527667045659
LRLLYILCYI	10	Unmodified	_LRLLYILCYI_					0	0	0			REV__ENST00000360612.4_1_22:50357064-50357445:+|nuORF	REV__ENST00000360612.4_1_22:50357064-50357445:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8832397460938	2	641.883227	1281.7519	0.25554	0.00016402	-1.0186	-0.00065382	-0.76307	-0.0004898	641.8825193789675	100.81	0.42868	100.83	100.49	100.92	0.027206					81	60	2	0	0	0	0.41642	1	26916	26916		0.45834	0.057624	1	101750	+		26496	20262	15070	15071	33138	33138					0.12229527667045659
LRLLYILCYI	10	Unmodified	_LRLLYILCYI_					0	0	0			REV__ENST00000360612.4_1_22:50357064-50357445:+|nuORF	REV__ENST00000360612.4_1_22:50357064-50357445:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.883056640625	2	641.883227	1281.7519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.43	1	101.46	100.96	101.96	0.027206								0	0	0	0.3808	1	27053	27053		1.8442	0.19162	1		+		26497	20262	15070	15071	33139	33139					0.12229527667045659
LRLMMLRK	8	Unmodified	_LRLMMLRK_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|1|1|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|1|1|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|1|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.8272705078125	2	530.827732	1059.64091	0.048931	2.5974E-05	-0.83595	-0.00044375	-0.78702	-0.00041777	530.8270551614357	12.729	0.30279	12.661	12.548	12.851	-0.067495					17	9	3	0	0	0	0.34353	1	223	223		4.756	1.4747	1	96766			26498	12442	15071	15072	33140	33140					0.11347609477979859
LRLPKQQLR	9	Unmodified	_LRLPKQQLR_					0	0	0		nc|ENSG00000163607|Q8N3Z3-3|GTPBP8;nc|ENSG00000163607|Q8N3Z3-2|GTPBP8;ENSG00000163607|ENST00000383678|GTPBP8	nc|ENSG00000163607|Q8N3Z3-3|GTPBP8	nc|ENSG00000163607|Q8N3Z3-3|GTPBP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3723754882812	2	576.372207	1150.72986	-0.16529	-9.5268E-05	0.52077	0.00030016	0.35548	0.00020489	576.3723811244323	25.247	0.6463	25.216	24.953	25.599	-0.031408					56	22	3	0	0	0	0.33018	1	3969	3969		4.3292	0	1	322680			26499	5708	15072	15073	33141	33141					0.16052484033502878
LRLQRLHKAAF	11	Unmodified	_LRLQRLHKAAF_					0	0	0		ENST00000372814.7_2_9:131218363-131231529:+|nuORF	ENST00000372814.7_2_9:131218363-131231529:+|nuORF	ENST00000372814.7_2_9:131218363-131231529:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.62469482421875	3	451.613967	1351.82007	0.22406	0.00010119	-0.080454	-3.6334E-05	0.1436	6.4853E-05	451.61389313717876	42.219	0.38451	42.304	42.18	42.565	0.085197					16	13	2	0	0	0	0.46554	1	9168	9168		2.6312	1.1761	1	213830			26500	9853	15073	15074	33142	33142					0.15823533361935915
LRLQRLHKAAF	11	Unmodified	_LRLQRLHKAAF_					0	0	0		ENST00000372814.7_2_9:131218363-131231529:+|nuORF	ENST00000372814.7_2_9:131218363-131231529:+|nuORF	ENST00000372814.7_2_9:131218363-131231529:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	451.613967	1351.82007	-0.12931	-5.8398E-05	0.40382	0.00018237	0.27451	0.00012397	451.614034966157	42.422	0.35101	42.422	42.355	42.706	0	0.080953	0.00037321	NaN	2.6312	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202810			26501	9853	15073	15074							0.15823533361935915
LRLQRLHKAAF	11	Unmodified	_LRLQRLHKAAF_					0	0	0		ENST00000372814.7_2_9:131218363-131231529:+|nuORF	ENST00000372814.7_2_9:131218363-131231529:+|nuORF	ENST00000372814.7_2_9:131218363-131231529:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	451.613967	1351.82007	0.31037	0.00014017	0.26646	0.00012034	0.57683	0.0002605	451.6141890420937	42.205	0.34569	42.297	42.095	42.441	0.091362	-0.044322	0.0001871	NaN	2.6312	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171290			26502	9853	15073	15074							0.15823533361935915
LRLREEEIR	9	Unmodified	_LRLREEEIR_					0	0	0			REV__ENSG00000182827|ENST00000366812|ACBD3	REV__ENSG00000182827|ENST00000366812|ACBD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.3538818359375	2	607.354211	1212.69387	0.54889	0.00033337	-0.82808	-0.00050294	-0.27919	-0.00016957	607.3538083283539	21.097	1.0017	21.097	20.678	21.68	0					90	34	4	0	0	0	0.34243	1	2823	2823		1.8442	0	1	742580	+		26503	18220	15074	15075	33143	33143					0.09602982065962351
LRLREIPD	8	Unmodified	_LRLREIPD_					0	0	0			REV__ENSG00000152611|ENST00000651391|CAPSL	REV__ENSG00000152611|ENST00000651391|CAPSL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.3006286621094	2	506.300916	1010.58728	-0.090094	-4.5614E-05	0.19589	9.9178E-05	0.10579	5.3563E-05	506.30096534910393	13.261	0.6357	13.194	12.965	13.6	-0.067495					37	22	2	0	0	0	0.37937	1	371	371		21.747	3.6003	1	87390	+		26504	16589	15075	15076	33144	33144					0.08240851571463281
LRLRQDGGLH	10	Unmodified	_LRLRQDGGLH_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.377197265625	2	582.833446	1163.65234	0.49016	0.00028568	-1.2149	-0.00070806	-0.72471	-0.00042238	582.8330100940276	38.756	0.55739	38.856	38.598	39.155	0.099407					38	19	3	0	0	0	0.31794	1	8154	8154		8.1555	1.4324	1	375720			26505	975	15076	15077	33145	33145					0.07705846097337599
LRLRQDGGLH	10	Unmodified	_LRLRQDGGLH_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	582.833446	1163.65234	-0.086004	-5.0126E-05	-0.47523	-0.00027698	-0.56124	-0.00032711	582.8332909060123	38.883	0.59244	38.883	38.597	39.189	0	0.010959	0.00023271	NaN	8.1555	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376140			26506	975	15076	15077							0.07705846097337599
LRLRQDGGLH	10	Unmodified	_LRLRQDGGLH_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	582.833446	1163.65234	0.24107	0.00014051	-0.69083	-0.00040264	-0.44976	-0.00026213	582.8330590879152	38.785	0.42942	38.877	38.648	39.078	0.09267	0.0053681	-1.86E-05	NaN	8.1555	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	398790			26507	975	15076	15077							0.07705846097337599
LRLRVVPLGIP	11	Unmodified	_LRLRVVPLGIP_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.801025390625	2	616.913707	1231.81286	0.15078	9.3019E-05	-0.13146	-8.1097E-05	0.019326	1.1922E-05	616.9137623177124	59.165	0.33026	59.165	58.996	59.326	0					19	11	2	0	0	0	0.33119	1	14384	14384		5.7319	0	1	204810			26508	12980	15077	15078	33146	33146					0.20622800761498183
LRLRVVPLGIP	11	Unmodified	_LRLRVVPLGIP_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.8009643554688	2	616.913707	1231.81286	0.16874	0.0001041	-1.5056	-0.00092882	-1.3368	-0.00082472	616.9135359239597	58.989	0.41471	59.08	58.875	59.29	0.091305					26	14	2	0	0	0	0.33119	1	14328	14328		5.7319	0	1	194810			26509	12980	15077	15078	33147	33147					0.20622800761498183
LRLRVVPLGIP	11	Unmodified	_LRLRVVPLGIP_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.8010864257812	2	616.913707	1231.81286	0.33353	0.00020576	-3.3559	-0.0020703	-3.0224	-0.0018646	617.4115796174011	59.11	1.0456	59.096	58.47	59.515	-0.014267					49	36	2	0	0	0	0.33119	1	14394	14394		5.7319	0	1	214530			26510	12980	15077	15078	33148	33148					0.20622800761498183
LRLSAYLQSTV	11	Unmodified	_LRLSAYLQSTV_					0	0	0			REV__nc|ENSG00000170037|Q8N137-5|CNTROB	REV__nc|ENSG00000170037|Q8N137-5|CNTROB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.920654296875	3	417.574955	1249.70304	0.23329	9.7414E-05	1.0876	0.00045417	1.3209	0.00055159	417.57517140023805	39.993	1.217	40.092	39.262	40.479	0.099407					54	43	2	0	0	0	0.42582	2	8471	8471;8522		7.846	1.2157	1	366760	+		26511	17559	15078	15079	33149;33150	33149					0.08817330631632103
LRLSFERKNLR	11	Unmodified	_LRLSFERKNLR_					0	0	0			REV__nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	REV__nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.9563903808594	3	477.956282	1430.84702	0.47482	0.00022694	-0.34046	-0.00016272	0.13436	6.4219E-05	477.9561191462074	40.156	1.1621	40.249	39.69	40.852	0.09267					118	41	4	0	0	0	0.38248	1	8557	8557		13.535	3.0075	1	3646300	+		26512	23180	15079	15080	33151	33151					0.14882597182463542
LRLSFERKNLR	11	Unmodified	_LRLSFERKNLR_					0	0	0			REV__nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	REV__nc|ENSG00000211706|A0A0K0K1D8|TRBV6-1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.9563293457031	3	477.956282	1430.84702	0.35903	0.0001716	-0.22029	-0.00010529	0.13874	6.6311E-05	477.9561634628376	40.111	1.2084	40.21	39.676	40.884	0.099403					121	43	4	0	0	0	0.38248	1	8488	8488		13.535	3.0075	1	3552500	+		26513	23180	15079	15080	33152	33152					0.14882597182463542
LRLVRLVGLIK	11	Unmodified	_LRLVRLVGLIK_					0	0	0			REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I;REV__ENSG00000196557|ENST00000348261|CACNA1H;REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__ENSG00000196557|ENST00000348261|CACNA1H	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.302490234375	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.067	1	60.162	59.662	60.662	0.095093								0	0	0	0.38222	1	14660	14660		0.094841	0.011491	1		+		26514	14184;18661;23149	15080	15081	33153	33153					0.25807349203978447
LRLWEWRDEWK	11	Unmodified	_LRLWEWRDEWK_					0	0	0			REV__nc|ENSG00000115306|Q01082-2|SPTBN1	REV__nc|ENSG00000115306|Q01082-2|SPTBN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.23828125	4	404.963763	1615.82595	-0.048332	-1.9573E-05	-0.73589	-0.00029801	-0.78422	-0.00031758	405.21426948419014	21.469	0.59507	21.469	21.199	21.795	0					46	20	3	0	0	0	0.33347	1	2798	2798		0.45452	0.45452	1	172090	+		26515	14873	15081	15082	33154	33154					0.04266587082929618
LRLWEWRDEWK	11	Unmodified	_LRLWEWRDEWK_					0	0	0			REV__nc|ENSG00000115306|Q01082-2|SPTBN1	REV__nc|ENSG00000115306|Q01082-2|SPTBN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2383117675781	4	404.963763	1615.82595	-0.0032825	-1.3293E-06	-0.88362	-0.00035783	-0.8869	-0.00035916	404.96339652566627	21.576	0.5604	21.476	21.244	21.804	-0.10034					53	19	4	0	0	0	0.33296	1	2872	2872		2.6312	2.1767	1	263960	+		26516	14873	15081	15082	33155	33155					0.04266587082929618
LRLWEWRDEWK	11	Unmodified	_LRLWEWRDEWK_					0	0	0			REV__nc|ENSG00000115306|Q01082-2|SPTBN1	REV__nc|ENSG00000115306|Q01082-2|SPTBN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.23846435546875	4	404.963763	1615.82595	-0.080981	-3.2795E-05	-0.60591	-0.00024537	-0.68689	-0.00027817	404.9634332825038	21.511	0.56523	21.461	21.265	21.83	-0.049377					45	19	3	0	0	0	0.33336	1	2878	2878		1.1098	0.6038	1	178200	+		26517	14873	15081	15082	33156	33156					0.04266587082929618
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8142700195312	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.4	1	115.4	114.9	115.9	0								0	0	0	0.37664	1	29907	29907		2.5775	0	1		+		26518	22084	15082	15083	33157	33157					0.08718326093912765
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8145751953125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.59	1	115.59	115.09	116.09	0								0	0	0	0.37664	1	29951	29951		2.5775	0	1		+		26519	22084	15082	15083	33158	33158					0.08718326093912765
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8141479492188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.91	1	116.91	116.41	117.41	0								0	0	0	0.37664	1	30253	30253		2.5775	0	1		+		26520	22084	15082	15083	33159	33159					0.08718326093912765
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140869140625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.96	1	118.96	118.46	119.46	0								0	0	0	0.37664	1	30712	30712		2.5775	0	1		+		26521	22084	15082	15083	33160	33160					0.08718326093912765
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8148803710938	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.01	1	119.01	118.51	119.51	0								0	0	0	0.37664	1	30724	30724		2.5775	0	1		+		26522	22084	15082	15083	33161	33161					0.08718326093912765
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.813720703125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.01	1	119.01	118.51	119.51	0								0	0	0	0.37664	1	30726	30726		2.5775	0	1		+		26523	22084	15082	15083	33162	33162					0.08718326093912765
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.814697265625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120	1	120	119.5	120.5	0								0	0	0	0.37664	1	30938	30938		2.5775	0	1		+		26524	22084	15082	15083	33163	33163					0.08718326093912765
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8135986328125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.27	1	114.25	113.75	114.75	-0.019096								0	0	0	0.37664	1	29680	29680		2.5775	0	1		+		26525	22084	15082	15083	33164	33164					0.08718326093912765
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8140258789062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.45	1	116.42	115.92	116.92	-0.022781								0	0	0	0.37664	1	30167	30167		2.5775	0	1		+		26526	22084	15082	15083	33165	33165					0.08718326093912765
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8151245117188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.07	1	114.08	113.58	114.58	0.016708								0	0	0	0.37664	1	29670	29670		2.5775	0	1		+		26527	22084	15082	15083	33166	33166					0.08718326093912765
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8145141601562	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.29	1	116.31	115.81	116.81	0.020988								0	0	0	0.37664	1	30178	30178		2.5775	0	1		+		26528	22084	15082	15083	33167	33167					0.08718326093912765
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8138427734375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.06	1	118.09	117.59	118.59	0.023476								0	0	0	0.37664	1	30585	30585		2.5775	0	1		+		26529	22084	15082	15083	33168	33168					0.08718326093912765
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.81591796875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.49	1	118.52	118.02	119.02	0.026253								0	0	0	0.37664	1	30682	30682		2.5775	0	1		+		26530	22084	15082	15083	33169	33169					0.08718326093912765
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8148193359375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.56	1	118.58	118.08	119.08	0.026253								0	0	0	0.37664	1	30698	30698		2.5775	0	1		+		26531	22084	15082	15083	33170	33170					0.08718326093912765
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8135986328125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.08	1	119.11	118.61	119.61	0.026253								0	0	0	0.37664	1	30813	30813		2.5775	0	1		+		26532	22084	15082	15083	33171	33171					0.08718326093912765
LRLYLLHE	8	Unmodified	_LRLYLLHE_					0	0	0			REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	REV__ENST00000536810.5_1_10:114710066-114710189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.81396484375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.67	1	119.69	119.19	120.19	0.027756								0	0	0	0.37664	1	30940	30940		2.5775	0	1		+		26533	22084	15082	15083	33172	33172					0.08718326093912765
LRNDTGILK	9	Unmodified	_LRNDTGILK_					0	0	0			REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF	REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2969360351562	2	515.306198	1028.59784	0.41257	0.0002126	0.30097	0.00015509	0.71353	0.00036769	515.3062561794044	20.606	0.45946	20.606	20.423	20.883	0					35	15	3	0	0	0	0.30824	1	2634	2634		7.609	0	1	170470	+		26534	16736	15083	15084	33173	33173					0.08468834225891442
LRNEATWIRVT	11	Unmodified	_LRNEATWIRVT_					0	0	0			REV__ENSG00000179698|ENST00000323662|WDR97	REV__ENSG00000179698|ENST00000323662|WDR97	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2662353515625	3	453.589487	1357.74663	0.80678	0.00036595	-0.73383	-0.00033286	0.072952	3.309E-05	453.5891178867941	47.221	0.69564	47.275	47.006	47.702	0.054371					66	25	4	0	0	0	0.33236	1	10630	10630		2.4348	2.4348	1	1361700	+		26535	18088	15084	15085	33174	33174					0.08206940128775386
LRNGERLQ	8	Unmodified	_LRNGERLQ_					0	0	0		HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;HMCN1|p.A5600Gfs*20|1|0.2|ENSG00000143341|chr1:186189767-186189768|-/G|frameshift_variant;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2802734375	2	493.280515	984.546476	0.082056	4.0477E-05	-0.32247	-0.00015907	-0.24041	-0.00011859	493.28025961206544	14.798	0.38926	14.798	14.591	14.981	0					30	13	3	0	0	0	0.40115	1	845	845		19.257	2.1441	1	276690			26536	4502	15085	15086	33175	33175					0.053585102518468375
LRNGRRLPVS	10	Unmodified	_LRNGRRLPVS_					0	0	0		ENST00000284000.8_1_19:33864654-33864687:+|nuORF	ENST00000284000.8_1_19:33864654-33864687:+|nuORF	ENST00000284000.8_1_19:33864654-33864687:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.6823120117188	2	584.357088	1166.69962	0.050063	2.9254E-05	-0.36503	-0.00021331	-0.31497	-0.00018405	584.3568739175477	101.98	0.30595	102	101.95	102.25	0.016685					62	44	2	0	0	0	0.32123	1	27204	27204		1.6526	0	1	68465			26537	9135	15086	15087	33176	33176					0.12294125368293862
LRNGRRLPVS	10	Unmodified	_LRNGRRLPVS_					0	0	0		ENST00000284000.8_1_19:33864654-33864687:+|nuORF	ENST00000284000.8_1_19:33864654-33864687:+|nuORF	ENST00000284000.8_1_19:33864654-33864687:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3745727539062	2	584.357088	1166.69962	0.28153	0.00016452	-0.53014	-0.00030979	-0.24861	-0.00014528	584.3566622976628	99.729	0.31148	99.722	99.556	99.867	-0.0069046					64	41	2	0	0	0	0.36786	1	26718	26718		9.3831	1.2276	1	104910			26538	9135	15086	15087	33177	33177					0.12294125368293862
LRNGRRLPVS	10	Unmodified	_LRNGRRLPVS_					0	0	0		ENST00000284000.8_1_19:33864654-33864687:+|nuORF	ENST00000284000.8_1_19:33864654-33864687:+|nuORF	ENST00000284000.8_1_19:33864654-33864687:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	584.357088	1166.69962	-0.086085	-5.0304E-05	-0.89217	-0.00052135	-0.97825	-0.00057165	584.8578474679745	102.1	0.041214	102.1	102.08	102.12	0	0.049237	-0.00056986	NaN	1.6526	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26421			26539	9135	15086	15087							0.12294125368293862
LRNHERREIQ	10	Unmodified	_LRNHERREIQ_					0	0	0		nc|ENSG00000112175|P22003-2|BMP5;ENSG00000112175|ENST00000370830|BMP5	nc|ENSG00000112175|P22003-2|BMP5	nc|ENSG00000112175|P22003-2|BMP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.9161682128906	3	450.916486	1349.72763	0.097729	4.4067E-05	-0.49437	-0.00022292	-0.39664	-0.00017885	450.91615416891904	17.723	1.4565	17.663	16.999	18.456	-0.060429					131	51	5	0	0	0	0.38952	1	1711	1711		5.4027	0.99656	1	791950			26540	2418	15087	15088	33178	33178					0.06675403557755999
LRNKPFCKR	9	Unmodified	_LRNKPFCKR_					0	0	0			REV__AGTPBP1|p.F394Lfs*13|1|0.17|ENSG00000135049|chr9:85646324-85646324|A/-|frameshift_variant	REV__AGTPBP1|p.F394Lfs*13|1|0.17|ENSG00000135049|chr9:85646324-85646324|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3375854492188	2	581.33731	1160.66007	0.14914	8.6698E-05	-0.29521	-0.00017162	-0.14608	-8.492E-05	581.3370437437627	23.802	1.733	23.802	23.11	24.843	0					134	59	4	0	0	0	0.34681	1	3644	3644		1.8442	0	1	1463700	+		26541	13090	15088	15089	33179	33179					0.08616282093225891
LRNLSSLAR	9	Unmodified	_LRNLSSLAR_					0	0	0		ENST00000342665.4_2_20:307553-308057:+|nuORF	ENST00000342665.4_2_20:307553-308057:+|nuORF	ENST00000342665.4_2_20:307553-308057:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.3115844726562	2	515.311815	1028.60908	-0.090902	-4.6843E-05	-0.30376	-0.00015653	-0.39467	-0.00020338	515.3115336749756	15.196	0.47363	15.132	14.984	15.457	-0.064414					30	15	3	0	0	0	0.2719	1	944	944		13.042	0	1	373460			26542	9533	15089	15090	33180	33180					0.09591656320048969
LRNPGKKII	9	Unmodified	_LRNPGKKII_					0	0	0		ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7828369140625	2	519.842751	1037.67095	0.58963	0.00030652	-0.046454	-2.4149E-05	0.54318	0.00028237	519.842781049408	55.246	0.90305	55.317	55.055	55.958	0.070885					47	33	2	0	0	0	0.25526	1	13212	13212		7.9102	1.187	1	395800			26543	8348	15090	15091	33181	33181					0.15362007739167893
LRNRVRSL	8	Unmodified	_LRNRVRSL_					0	0	0		ENSG00000186409|ENST00000657597|CCDC30	ENSG00000186409|ENST00000657597|CCDC30	ENSG00000186409|ENST00000657597|CCDC30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.31976318359375	2	507.319974	1012.6254	0.028218	1.4316E-05	-0.33623	-0.00017058	-0.30801	-0.00015626	507.31984586494815	14.783	0.33377	14.676	14.487	14.821	-0.10668					21	9	3	0	0	0	0.44389	1	841	841		7.9102	7.9102	1	127390			26544	7611	15091	15092	33182	33182					0.11958782276781221
LRNRVRSL	8	Unmodified	_LRNRVRSL_					0	0	0		ENSG00000186409|ENST00000657597|CCDC30	ENSG00000186409|ENST00000657597|CCDC30	ENSG00000186409|ENST00000657597|CCDC30	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.319974	1012.6254	0.01546	7.843E-06	-0.39855	-0.00020219	-0.38309	-0.00019435	507.3197834827897	14.662	0.44998	14.662	14.423	14.873	0	-0.024195	-3.9424E-05	NaN	7.9102	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127090			26545	7611	15091	15092							0.11958782276781221
LRNRVRSL	8	Unmodified	_LRNRVRSL_					0	0	0		ENSG00000186409|ENST00000657597|CCDC30	ENSG00000186409|ENST00000657597|CCDC30	ENSG00000186409|ENST00000657597|CCDC30	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.319974	1012.6254	-0.020225	-1.0261E-05	-0.33007	-0.00016745	-0.3503	-0.00017771	507.31980027373504	14.784	0.39411	14.72	14.589	14.984	-0.064413	0.033977	3.0058E-05	NaN	7.9102	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128600			26546	7611	15091	15092							0.11958782276781221
LRNVHKVTTC	10	Unmodified	_LRNVHKVTTC_					0	0	0		ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8131713867188	2	585.824232	1169.63391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.3	1	95.298	94.798	95.798	-0.0020142								0	0	0	0.3726	1	25455	25455		5.2969	0.066215	1				26547	7959	15092	15093	33183	33183					0.05587968131112575
LRPGAQEAQI	10	Unmodified	_LRPGAQEAQI_					0	0	0		ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.3334350585938	2	541.80128	1081.58801	0.464	0.0002514	-0.52928	-0.00028677	-0.065284	-3.5371E-05	541.8006827788766	17.74	0.45788	17.679	17.414	17.872	-0.060429					22	15	2	0	0	0	0.32132	1	1771	1771		1.4819	0	1	26286			26548	7813	15093	15094	33184	33184					0.05047646220509705
LRPILAARL	9	Unmodified	_LRPILAARL_					0	0	0		ENST00000526246.5_1_11:66099749-66102792:-|nuORF;ENSG00000174791|ENST00000311320|RIN1	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2848510742188	2	511.845294	1021.67603	0.28575	0.00014626	-0.1925	-9.8528E-05	0.093252	4.773E-05	511.84507604467	52.334	0.13166	52.385	52.309	52.441	0.050575					6	4	2	0	0	0	0.25988	1	12267	12267		3.9444	0	1	183980			26549	6815	15094	15095	33185	33185					0.16606311601776724
LRPLVELEE	9	Unmodified	_LRPLVELEE_					0	0	0			REV__ENSG00000154370|ENST00000284551|TRIM11	REV__ENSG00000154370|ENST00000284551|TRIM11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2344360351562	2	549.313689	1096.61282	0.42563	0.0002338	-1.631	-0.00089594	-1.2054	-0.00066214	549.3134854047954	62.253	0.17806	62.253	62.138	62.316	0					10	6	2	0	0	0	0.25202	1	15361	15361		10.824	1.4765	1	99640	+		26550	16665	15095	15096	33186	33186					0.06838281303225813
LRPPLLQL	8	Unmodified	_LRPPLLQL_					0	0	0		ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.3133544921875	2	475.313295	948.612037	0.19054	9.0565E-05	0.1093	5.1952E-05	0.29984	0.00014252	475.31324721656244	62.359	1.3598	62.359	61.836	63.195	0					140	50	4	0	0	0	0.072895	4	15333	15288;15333;15381;15428		67.344	14.811	1	2623100			26551	1934	15096	15097	33187;33188;33189;33190	33188					0.1356753144484628
LRPPLLQL	8	Unmodified	_LRPPLLQL_					0	0	0		ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.3133239746094	2	475.313295	948.612037	0.22985	0.00010925	0.026322	1.2511E-05	0.25618	0.00012176	475.313204219519	62.261	1.3083	62.358	61.841	63.149	0.096985					122	47	4	0	0	0	0.057992	4	15348	15250;15302;15348;15390		74.423	15.983	1	3049000			26552	1934	15096	15097	33191;33192;33193;33194	33193					0.1356753144484628
LRPPLLQL	8	Unmodified	_LRPPLLQL_					0	0	0		ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.3133850097656	2	475.313295	948.612037	0.27476	0.0001306	0.011339	5.3895E-06	0.2861	0.00013599	475.3132016017913	62.315	1.3206	62.306	61.784	63.104	-0.0085526					124	48	4	0	0	0	0.072895	4	15376	15278;15328;15376;15426		67.344	14.811	1	2936400			26553	1934	15096	15097	33195;33196;33197;33198	33197					0.1356753144484628
LRPQHCCDRR	10	Unmodified	_LRPQHCCDRR_					0	0	0			REV__ENST00000325285.7_2_9:139837107-139837825:-|nuORF	REV__ENST00000325285.7_2_9:139837107-139837825:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.92999267578125	3	428.545119	1282.61353	0.14007	6.0025E-05	-1.2306	-0.00052739	-1.0906	-0.00046736	428.544529353653	32.603	0.55835	32.603	32.279	32.837	0					38	19	3	0	0	0	0.32082	1	6156	6156		1.5923	0.63001	1	106110	+		26554	19996	15097	15098	33199	33199					-0.016475258003765703
LRPQHCCDRR	10	Unmodified	_LRPQHCCDRR_					0	0	0			REV__ENST00000325285.7_2_9:139837107-139837825:-|nuORF	REV__ENST00000325285.7_2_9:139837107-139837825:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	428.545119	1282.61353	-0.078516	-3.3648E-05	-1.6047	-0.00068771	-1.6833	-0.00072136	428.54447317615836	32.925	0.13588	32.979	32.877	33.013	0.054375	0.25255	-0.00030686	NaN	1.5923	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53006	+		26555	19996	15097	15098							-0.016475258003765703
LRPRALGPRAL	11	Unmodified	_LRPRALGPRAL_					0	0	0			REV__ENST00000588870.1_1_17:40811475-40811571:+|nuORF	REV__ENST00000588870.1_1_17:40811475-40811571:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.2630615234375	3	407.263046	1218.76731	0.20951	8.5326E-05	-0.09247	-3.766E-05	0.11704	4.7666E-05	407.26293661930265	32.446	0.55681	32.446	32.225	32.782	0					47	19	3	0	0	0	0.37728	1	6184	6184		14.218	0.69951	1	362820	+		26556	22547	15098	15099	33200	33200					0.16667575299129567
LRPRALGPRAL	11	Unmodified	_LRPRALGPRAL_					0	0	0			REV__ENST00000588870.1_1_17:40811475-40811571:+|nuORF	REV__ENST00000588870.1_1_17:40811475-40811571:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	407.263046	1218.76731	0.20951	8.5326E-05	-0.09247	-3.766E-05	0.11704	4.7666E-05	407.26293661930265	32.446	0.55681	32.446	32.225	32.782	0	0.012484	1.1333E-05	NaN	14.218	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362820	+		26557	22547	15098	15099							0.16667575299129567
LRPSISLMFG	10	Unmodified	_LRPSISLMFG_					0	0	0			REV__ENSG00000204267|ENST00000374897|TAP2	REV__ENSG00000204267|ENST00000374897|TAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.765380859375	2	560.812802	1119.61105	-0.37462	-0.00021009	0.97808	0.00054852	0.60346	0.00033843	560.8132447710609	34.463	0.5279	34.463	34.247	34.775	0					29	18	2	0	0	0	0.32009	1	6874	6874		3.9444	0.3479	1	186950	+		26558	18929	15099	15100	33201	33201					0.056029490136324966
LRPSRATGLGP	11	Unmodified	_LRPSRATGLGP_					0	0	0		ENST00000609477.5_1_6:125623008-125623086:-|nuORF	ENST00000609477.5_1_6:125623008-125623086:-|nuORF	ENST00000609477.5_1_6:125623008-125623086:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8007202148438	2	562.830372	1123.64619	0.10726	6.0372E-05	0.22828	0.00012848	0.33554	0.00018885	562.8302070030669	25.818	0.41748	25.818	25.591	26.009	0					22	14	2	0	0	0	0.33292	1	4151	4151		2.2828	0	1	192270			26559	12327	15100	15101	33202	33202					0.08931327865798266
LRQAQAQHL	9	Unmodified	_LRQAQAQHL_					0	0	0		ENSG00000101004|ENST00000278886|NINL;nc|ENSG00000101004|Q9Y2I6-2|NINL;ENST00000464285.5_1_20:25434089-25439234:-|nuORF	ENSG00000101004|ENST00000278886|NINL	ENSG00000101004|ENST00000278886|NINL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.8023071289062	2	532.801614	1063.58868	0.34443	0.00018351	-0.41659	-0.00022196	-0.072158	-3.8446E-05	532.8016973973704	19.534	0.80438	19.534	19.211	20.016	0					70	28	3	0	0	0	0.33276	1	2302	2302		3.9444	3.9444	1	133240			26560	1658	15101	15102	33203	33203					0.059424856602163345
LRQEAVMEL	9	Unmodified	_LRQEAVMEL_					0	0	0			REV__ENST00000376350.7_2_19:55715185-55715341:-|nuORF	REV__ENST00000376350.7_2_19:55715185-55715341:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7919311523438	2	544.792066	1087.56958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.59	1	115.59	115.09	116.09	0								0	0	0	0.2575	1	29952	29952		3.9444	0.3479	1		+		26561	20488	15102	15103	33204	33204					0.02929768254307419
LRQEAVMEL	9	Unmodified	_LRQEAVMEL_					0	0	0			REV__ENST00000376350.7_2_19:55715185-55715341:-|nuORF	REV__ENST00000376350.7_2_19:55715185-55715341:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7918090820312	2	544.792066	1087.56958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.07	1	118.07	117.57	118.57	0								0	0	0	0.2646	1	30513	30513		1.6526	0	1		+		26562	20488	15102	15103	33205	33205					0.02929768254307419
LRQEAVMEL	9	Unmodified	_LRQEAVMEL_					0	0	0			REV__ENST00000376350.7_2_19:55715185-55715341:-|nuORF	REV__ENST00000376350.7_2_19:55715185-55715341:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.79248046875	2	544.792066	1087.56958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.27	1	116.24	115.74	116.74	-0.022781								0	0	0	0.2575	1	30123	30123		3.9444	0	1		+		26563	20488	15102	15103	33206	33206					0.02929768254307419
LRQFRPAPPP	10	Unmodified	_LRQFRPAPPP_					0	0	0		ENST00000487519.5_1_10:60144939-60145170:+|nuORF	ENST00000487519.5_1_10:60144939-60145170:+|nuORF	ENST00000487519.5_1_10:60144939-60145170:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8448486328125	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.77	1	114.77	114.27	115.27	0								0	0	0	0.38126	1	29764	29764		1.6526	0.17072	1				26564	11120	15103	15104	33207	33207					0.09028222108076989
LRQFRPAPPP	10	Unmodified	_LRQFRPAPPP_					0	0	0		ENST00000487519.5_1_10:60144939-60145170:+|nuORF	ENST00000487519.5_1_10:60144939-60145170:+|nuORF	ENST00000487519.5_1_10:60144939-60145170:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8455810546875	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.98	1	114.96	114.46	115.46	-0.020988								0	0	0	0.38166	1	29832	29832		1.4819	0.8804	1				26565	11120	15103	15104	33208	33208					0.09028222108076989
LRQFRPAPPP	10	Unmodified	_LRQFRPAPPP_					0	0	0		ENST00000487519.5_1_10:60144939-60145170:+|nuORF	ENST00000487519.5_1_10:60144939-60145170:+|nuORF	ENST00000487519.5_1_10:60144939-60145170:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8451538085938	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.62	1	112.64	112.14	113.14	0.0131								0	0	0	0.38126	1	29309	29309		1.6526	0.17072	1				26566	11120	15103	15104	33209	33209					0.09028222108076989
LRQFRPAPPP	10	Unmodified	_LRQFRPAPPP_					0	0	0		ENST00000487519.5_1_10:60144939-60145170:+|nuORF	ENST00000487519.5_1_10:60144939-60145170:+|nuORF	ENST00000487519.5_1_10:60144939-60145170:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.845703125	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.41	1	115.43	114.93	115.93	0.018738								0	0	0	0.38126	1	29978	29978		1.6526	0.17072	1				26567	11120	15103	15104	33210	33210					0.09028222108076989
LRQKGPRF	8	Unmodified	_LRQKGPRF_					0	0	0		ENST00000470730.5_1_X:67718978-67733354:+|nuORF	ENST00000470730.5_1_X:67718978-67733354:+|nuORF	ENST00000470730.5_1_X:67718978-67733354:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3035583496094	2	501.303793	1000.59303	0.19705	9.878E-05	0.055005	2.7574E-05	0.25205	0.00012635	501.3037259401696	19.465	0.88841	19.465	19.157	20.045	0					94	31	4	0	0	0	0.45169	1	2374	2374		5.2307	5.2307	1	584240			26568	10868	15104	15105	33211	33211					0.09275994873803484
LRQKYLERI	9	Unmodified	_LRQKYLERI_					0	0	0			REV__ENST00000440294.6_1_3:38080716-38136583:+|nuORF	REV__ENST00000440294.6_1_3:38080716-38136583:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.869873046875	2	609.869497	1217.72444	0.65563	0.00039985	0.087214	5.3189E-05	0.74285	0.00045304	609.8695333502337	34.069	0.83501	34.069	33.753	34.588	0					65	29	4	0	0	0	0.14786	1	6711	6711		31.268	1.4278	1	701680	+		26569	13397	15105	15106	33212	33212					0.1242876045103003
LRQKYLERI	9	Unmodified	_LRQKYLERI_					0	0	0			REV__ENST00000440294.6_1_3:38080716-38136583:+|nuORF	REV__ENST00000440294.6_1_3:38080716-38136583:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.8697509765625	2	609.869497	1217.72444	0.90391	0.00055127	-0.11654	-7.1076E-05	0.78737	0.00048019	609.8693341912756	33.854	0.72403	33.92	33.65	34.374	0.06636					59	25	3	0	0	0	0.13748	1	6643	6643		32.786	5.1569	1	663720	+		26570	13397	15105	15106	33213	33213					0.1242876045103003
LRQKYLERI	9	Unmodified	_LRQKYLERI_					0	0	0			REV__ENST00000440294.6_1_3:38080716-38136583:+|nuORF	REV__ENST00000440294.6_1_3:38080716-38136583:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.8698120117188	2	609.869497	1217.72444	0.15234	9.2909E-05	0.39092	0.00023841	0.54327	0.00033132	609.8696905153607	33.915	0.66855	33.981	33.711	34.38	0.066704					60	23	3	0	0	0	0.19747	1	6662	6662		24.021	1.2843	1	704380	+		26571	13397	15105	15106	33214	33214					0.1242876045103003
LRQNPTISL	9	Unmodified	_LRQNPTISL_					0	0	0		nc|ENSG00000128536|Q6ZTQ4-2|CDHR3;ENSG00000128536|ENST00000317716|CDHR3	nc|ENSG00000128536|Q6ZTQ4-2|CDHR3	nc|ENSG00000128536|Q6ZTQ4-2|CDHR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.3065185546875	2	521.306198	1040.59784	0.54045	0.00028174	0.15919	8.2984E-05	0.69964	0.00036472	521.3061691650779	36.377	0.58734	36.377	36.2	36.787	0					46	20	3	0	0	0	0.088443	1	7378	7378		39.95	1.7741	1	1117900			26572	3373	15106	15107	33215	33215					0.07916834225898128
LRQPQAWK	8	Unmodified	_LRQPQAWK_					0	0	0		ENST00000573846.1_1_16:67976245-67976785:-|nuORF;LCAT|p.L338Pfs*24|1|0.24|ENSG00000213398|chr16:67940201-67940214|GCCCACGCCGTAAA/-|frameshift_variant;ENSG00000213398|ENST00000264005|LCAT	ENST00000573846.1_1_16:67976245-67976785:-|nuORF	ENST00000573846.1_1_16:67976245-67976785:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7938232421875	2	513.795801	1025.57705	0.13901	7.1425E-05	0.29592	0.00015204	0.43494	0.00022347	514.2978153056481	19.364	0.8884	19.308	18.989	19.877	-0.055693					103	30	5	0	0	0	0.4419	1	2202	2202		8.5933	0	1	393830			26573	8342	15107	15108	33216	33216					0.06528288636877733
LRQRSALA	8	Unmodified	_LRQRSALA_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7798156738281	2	457.780151	913.545748	-0.13203	-6.0442E-05	-0.49162	-0.00022505	-0.62365	-0.00028549	457.77992753261776	23.126	0.60483	23.126	22.875	23.48	0					31	20	2	0	0	0	0.43043	1	3362	3362		12.532	1.7076	1	221190			26574	460	15108	15109	33217	33217					0.08551715602789045
LRQRVRNLDA	10	Unmodified	_LRQRVRNLDA_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2142639160156	3	414.245944	1239.716	0.10814	4.4796E-05	-0.9613	-0.00039822	-0.85316	-0.00035342	414.24556101702433	17.753	0.54454	17.636	17.441	17.985	-0.11739					38	18	3	0	0	0	0.31942	1	1714	1714		3.5871	0	1	91099	+		26575	15247	15109	15110	33218	33218					0.10573206534400015
LRQSASHLE	9	Unmodified	_LRQSASHLE_					0	0	0			REV__CON__Q9N2I2	REV__CON__Q9N2I2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2756958007812	2	520.777805	1039.54106	0.57968	0.00030188	0.03837	1.9982E-05	0.61805	0.00032186	520.7779214554996	83.611	0.37214	83.594	83.375	83.747	-0.016823					19	15	2	0	0	0	0.25622	1	21837	21837		7.2892	0	1	85366	+	+	26576	13278	15110	15111	33219	33219					0.02286786669378671
LRQVGSVPSL	10	Unmodified	_LRQVGSVPSL_					0	0	0		ENST00000480194.5_1_6:10748006-10756748:+|nuORF	ENST00000480194.5_1_6:10748006-10756748:+|nuORF	ENST00000480194.5_1_6:10748006-10756748:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3158569335938	2	528.314023	1054.61349	0.49303	0.00026047	0.36869	0.00019478	0.86172	0.00045526	528.3144418917071	39.617	1.678	39.717	39.046	40.724	0.099407					134	60	4	0	0	0	0.30872	1	8278	8278		19.362	0.98885	1	2906600			26577	11004	15111	15112	33220	33220					0.08837120742964544
LRQVRAAL	8	Unmodified	_LRQVRAAL_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.7977294921875	2	463.798343	925.582134	-1.0108	-0.00046881	-0.25907	-0.00012016	-1.2699	-0.00058897	463.79819024557537	35.089	0.91394	35.089	34.805	35.719	0					84	32	4	0	0	0	0.082568	2	6995	6948;6995		63.563	4.8263	1	2557200			26578	369	15112	15113	33221;33222	33222					0.11636592499496601
LRRDQLGLEL	10	Unmodified	_LRRDQLGLEL_					0	0	0		ENST00000476091.1_1_9:130287163-130289496:-|nuORF	ENST00000476091.1_1_9:130287163-130289496:-|nuORF	ENST00000476091.1_1_9:130287163-130289496:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.9067077636719	3	404.906816	1211.69862	-0.24601	-9.961E-05	0.35937	0.00014551	0.11337	4.5903E-05	404.90689540411404	16.141	0.62917	16.141	15.892	16.521	0					57	21	4	0	0	0	0.36786	1	1239	1239		5.4027	0	1	287270			26579	10943	15113	15114	33223	33223					0.10123866208732579
LRRHERSHPEL	11	Unmodified	_LRRHERSHPEL_					0	0	0		ENSG00000167394|ENST00000300849|ZNF668;nc|ENSG00000167394|Q96K58-2|ZNF668	ENSG00000167394|ENST00000300849|ZNF668	ENSG00000167394|ENST00000300849|ZNF668	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.2637023925781	3	477.263886	1428.76983	0.60818	0.00029026	-0.98665	-0.00047089	-0.37847	-0.00018063	477.2634381018071	50.628	0.54164	50.628	50.381	50.922	0					51	19	3	0	0	0	0.46002	1	11761	11761		3.3557	0.72449	1	765580			26580	6173	15114	15115	33224	33224					0.07259378966136865
LRRKLVAA	8	Unmodified	_LRRKLVAA_					0	0	0			REV__ENSG00000167543|ENST00000301057|TP53I13	REV__ENSG00000167543|ENST00000301057|TP53I13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.7581787109375	2	463.816536	925.618519	-0.24497	-0.00011362	-0.22123	-0.00010261	-0.4662	-0.00021623	463.8164229038255	23.007	0.46111	23.007	22.736	23.197	0					23	15	2	0	0	0	0.34337	1	3304	3304		5.2307	0	1	35072	+		26581	17390	15115	15116	33225	33225					0.15273469396208839
LRRKLVAA	8	Unmodified	_LRRKLVAA_					0	0	0			REV__ENSG00000167543|ENST00000301057|TP53I13	REV__ENSG00000167543|ENST00000301057|TP53I13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	463.816536	925.618519	0.12283	5.697E-05	-0.28654	-0.0001329	-0.16371	-7.5932E-05	463.81628399708484	23.116	0.3529	23.071	22.925	23.277	-0.044867	0.048976	-0.00020979	NaN	5.2307	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42935	+		26582	17390	15115	15116							0.15273469396208839
LRRKVIEQVQ	10	Unmodified	_LRRKVIEQVQ_					0	0	0		CON__P02672	CON__P02672	CON__P02672	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.8930053710938	2	634.893503	1267.77245	0.024015	1.5247E-05	-0.3362	-0.00021345	-0.31218	-0.0001982	634.8929842786309	97.302	0.95656	97.302	97.002	97.959	0					294	99	4	0	0	0	0.4155	1	26165	26165		1.4819	0	1	1113100		+	26583	210	15116	15117	33226	33226					0.1492783437106482
LRRKWRRWHLQ	11	Unmodified	_LRRKWRRWHLQ_					0	0	0		ENST00000498102.1_1_3:42576287-42577770:+|nuORF;nc|ENSG00000114812|P32241-3|VIPR1;nc|ENSG00000114812|P32241-4|VIPR1;nc|ENSG00000114812|P32241-5|VIPR1;ENSG00000114812|ENST00000325123|VIPR1;nc|ENSG00000114812|P32241-2|VIPR1	ENST00000498102.1_1_3:42576287-42577770:+|nuORF	ENST00000498102.1_1_3:42576287-42577770:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.6612548828125	3	545.658681	1633.95422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.377	1	99.37	98.87	99.87	-0.006897								0	0	0	0.38124	1	26618	26618		1.2148	1.1315	1				26584	2584	15117	15118	33227	33227					0.16259611907344151
LRRLPRRLQ	9	Unmodified	_LRRLPRRLQ_					0	0	0		ENST00000435009.2_1_13:41341020-41341101:-|nuORF	ENST00000435009.2_1_13:41341020-41341101:-|nuORF	ENST00000435009.2_1_13:41341020-41341101:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.2157897949219	3	403.266791	1206.77854	-0.24795	-9.9988E-05	0.17103	6.8971E-05	-0.076915	-3.1017E-05	403.60123164337244	21.974	0.6007	21.925	21.689	22.29	-0.049377					22	21	2	0	0	0	0.26238	1	3103	3103		1.0715	1.0715	1	60017			26585	10503	15118	15119	33228	33228					0.18342397393280407
LRRLQAASL	9	Unmodified	_LRRLQAASL_					0	0	0			REV__ENST00000546490.1_1_12:102091639-102108044:+|nuORF	REV__ENST00000546490.1_1_12:102091639-102108044:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.3211059570312	2	514.322183	1026.62981	-1.3861	-0.00071289	-0.022309	-1.1474E-05	-1.4084	-0.00072436	514.3219867955377	34.652	0.57453	34.727	34.549	35.123	0.075306					46	20	3	0	0	0	0.11461	1	6867	6867		36.127	0	1	487580	+		26586	13151	15119	15120	33229	33229					0.11756246699701478
LRRLQAASL	9	Unmodified	_LRRLQAASL_					0	0	0			REV__ENST00000546490.1_1_12:102091639-102108044:+|nuORF	REV__ENST00000546490.1_1_12:102091639-102108044:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.3212280273438	2	514.322183	1026.62981	-0.58561	-0.00030119	-0.90193	-0.00046388	-1.4875	-0.00076507	514.3216140696825	34.675	0.66663	34.753	34.474	35.141	0.077377					50	23	3	0	0	0	0.079752	1	6859	6859		41.84	0	1	403500	+		26587	13151	15119	15120	33230	33230					0.11756246699701478
LRRLQAASL	9	Unmodified	_LRRLQAASL_					0	0	0			REV__ENST00000546490.1_1_12:102091639-102108044:+|nuORF	REV__ENST00000546490.1_1_12:102091639-102108044:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	514.322183	1026.62981	-0.58561	-0.00030119	-0.90193	-0.00046388	-1.4875	-0.00076507	514.3216140696825	34.675	0.66663	34.753	34.474	35.141	0.077377	-0.004664	-0.00058433	NaN	41.84	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403500	+		26588	13151	15119	15120							0.11756246699701478
LRRLVPDDRV	10	Unmodified	_LRRLVPDDRV_					0	0	0			REV__ENSG00000124134|ENST00000537075|KCNS1	REV__ENSG00000124134|ENST00000537075|KCNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.868896484375	2	619.870028	1237.7255	0.12236	7.5846E-05	-0.35072	-0.0002174	-0.22836	-0.00014155	619.8691099845951	93.934	1.0034	93.934	93.572	94.575	0					131	82	2	0	0	0	0.41085	2	24941	24941;24982		1.4819	1.4819	1	117470	+		26589	15209	15120	15121	33231;33232	33231					0.11614974819917734
LRRLVPDDRV	10	Unmodified	_LRRLVPDDRV_					0	0	0			REV__ENSG00000124134|ENST00000537075|KCNS1	REV__ENSG00000124134|ENST00000537075|KCNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.869140625	2	619.870028	1237.7255	0.039957	2.4768E-05	-0.2909	-0.00018032	-0.25095	-0.00015555	619.8690411428602	95.731	0.48901	95.731	95.43	95.919	0					74	49	2	0	0	0	0.41085	1	25507	25507		1.4819	0.95714	1	123240	+		26590	15209	15120	15121	33233	33233					0.11614974819917734
LRRLVPDDRV	10	Unmodified	_LRRLVPDDRV_					0	0	0			REV__ENSG00000124134|ENST00000537075|KCNS1	REV__ENSG00000124134|ENST00000537075|KCNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8697509765625	2	619.870028	1237.7255	0.26797	0.00016611	-0.078156	-4.8447E-05	0.18981	0.00011766	619.8689178591079	95.573	0.59771	95.57	95.147	95.745	-0.0038147					87	60	2	0	0	0	0.41085	1	25484	25484		1.4819	0	1	155640	+		26591	15209	15120	15121	33234	33234					0.11614974819917734
LRRLVPDDRV	10	Unmodified	_LRRLVPDDRV_					0	0	0			REV__ENSG00000124134|ENST00000537075|KCNS1	REV__ENSG00000124134|ENST00000537075|KCNS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.86962890625	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.224	1	99.217	98.717	99.717	-0.006897								0	0	0	0.38166	1	26578	26578		1.4819	0.15237	1		+		26592	15209	15120	15121	33235	33235					0.11614974819917734
LRRNADVGWV	10	Unmodified	_LRRNADVGWV_					0	0	0		ENST00000330676.7_1_17:1610856-1611054:-|nuORF	ENST00000330676.7_1_17:1610856-1611054:-|nuORF	ENST00000330676.7_1_17:1610856-1611054:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8284912109375	2	593.327996	1184.64144	0.57119	0.0003389	-0.59789	-0.00035475	-0.026705	-1.5845E-05	593.328533200966	86.294	0.75598	86.285	85.848	86.604	-0.0090103					59	29	3	0	0	0	0.39935	1	22723	22723		3.5965	0.60125	1	173230			26593	9440	15121	15122	33236	33236					0.056504437230159965
LRRNINNIL	9	Unmodified	_LRRNINNIL_					0	0	0			REV__ENSG00000134001|ENST00000256383|EIF2S1	REV__ENSG00000134001|ENST00000256383|EIF2S1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.2586059570312	2	563.346189	1124.67783	0.16836	9.4847E-05	-0.082166	-4.6288E-05	0.086198	4.8559E-05	563.3460346658034	17.2	0.41412	17.083	16.909	17.323	-0.11739					23	14	2	0	0	0	0.25938	1	1571	1571		4.3292	0	1	45911	+		26594	15648	15122	15123	33237	33237					0.12047320619740276
LRRNQFIL	8	Unmodified	_LRRNQFIL_					0	0	0		ENSG00000184374|ENST00000332843|COLEC10	ENSG00000184374|ENST00000332843|COLEC10	ENSG00000184374|ENST00000332843|COLEC10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2425537109375	2	530.324725	1058.6349	0.41418	0.00021965	0.51287	0.00027199	0.92705	0.00049164	530.3248543225411	27.132	0.56997	27.132	26.871	27.441	0					26	19	2	0	0	0	0.34337	1	4630	4630		5.2307	5.2307	1	59377			26595	7449	15123	15124	33238	33238					0.10792550562314318
LRRPANKNF	9	Unmodified	_LRRPANKNF_					0	0	0			REV__ENST00000503065.1_1_5:39269751-39270728:-|nuORF	REV__ENST00000503065.1_1_5:39269751-39270728:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3246459960938	2	558.325257	1114.63596	0.37172	0.00020754	-0.68021	-0.00037978	-0.30849	-0.00017224	558.3245913787237	89.91	0.75346	89.91	89.638	90.391	0.00039673					134	63	3	0	0	0	0.32733	1	23889	23889		4.756	1.1595	1	421460	+		26596	21723	15124	15125	33239	33239					0.08322764931199345
LRRQERERKFL	11	Unmodified	_LRRQERERKFL_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.292724609375	3	510.970702	1529.89028	0.26272	0.00013424	-0.47694	-0.0002437	-0.21422	-0.00010946	510.9704452224722	21.482	0.65431	21.432	21.15	21.804	-0.049377					60	22	4	0	0	0	0.33351	1	2778	2778		0.094841	0.094841	1	231290			26597	5409	15125	15126	33240	33240					0.14652786959732111
LRRQLEVL	8	Unmodified	_LRRQLEVL_					0	0	0		ENSG00000161849|ENST00000257951|KRT84;CON__Q9NSB2;CON__Q6ISB0	ENSG00000161849|ENST00000257951|KRT84	ENSG00000161849|ENST00000257951|KRT84	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.8253173828125	2	513.824558	1025.63456	0.27556	0.00014159	0.31651	0.00016263	0.59207	0.00030422	513.8248352235285	33.355	1.3233	33.355	33.039	34.362	0					104	47	4	0	0	0	0.30241	1	6437	6437		25.399	2.663	1	3612900		+	26598	238	15126	15127	33241	33241					0.12277130842471706
LRRQLGLSK	9	Unmodified	_LRRQLGLSK_					0	0	0			REV__nc|ENSG00000093144|Q9NTX5-6|ECHDC1	REV__nc|ENSG00000093144|Q9NTX5-6|ECHDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7703857421875	2	535.843282	1069.67201	0.30301	0.00016237	4.2998	0.002304	4.6029	0.0024664	535.8449985219593	47.235	0.45549	47.287	47.088	47.544	0.052574					26	16	2	0	0	0	0.24471	1	10744	10744		17.113	1.8644	1	390480	+		26599	22906	15127	15128	33242	33242					0.13996222108062284
LRRRLLPRLR	10	Unmodified	_LRRRLLPRLR_					0	0	0			REV__ENST00000453168.5_1_3:31574222-31574351:+|nuORF	REV__ENST00000453168.5_1_3:31574222-31574351:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2632751464844	3	450.30899	1347.90514	-0.14707	-6.6228E-05	-2.2996	-0.0010355	-2.4466	-0.0011017	450.6424240206766	39.416	0.2459	39.416	39.294	39.54	0					12	8	2	0	0	0	0.32174	1	8291	8291		0.15932	0	1	62652	+		26600	21136	15128	15129	33243	33243					0.24510323618369512
LRRRPARPLLA	11	Unmodified	_LRRRPARPLLA_					0	0	0			REV__ENST00000204005.13_1_19:41112319-41113358:+|nuORF	REV__ENST00000204005.13_1_19:41112319-41113358:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.2895202636719	3	440.289595	1317.84696	-0.12179	-5.3623E-05	-0.13763	-6.0597E-05	-0.25942	-0.00011422	440.28951348073974	27.544	0.91247	27.544	27.294	28.207	0					83	31	4	0	0	0	0.44713	1	4681	4681		5.0475	0.3316	1	396420	+		26601	19397	15129	15130	33244	33244					0.20074641973110374
LRRRPKPLNS	10	Unmodified	_LRRRPKPLNS_					0	0	0		ENST00000539777.5_1_1:168105623-168105902:-|nuORF	ENST00000539777.5_1_1:168105623-168105902:-|nuORF	ENST00000539777.5_1_1:168105623-168105902:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.8856811523438	2	618.886013	1235.75747	-0.081344	-5.0343E-05	-0.056937	-3.5237E-05	-0.13828	-8.558E-05	618.8858664072956	25.602	0.52933	25.571	25.294	25.824	-0.03141					40	18	3	0	0	0	0.40106	1	4135	4135		3.2813	0.28607	1	226320			26602	11712	15130	15131	33245	33245					0.14902387293750508
LRRRPNPF	8	Unmodified	_LRRRPNPF_					0	0	0			REV__ENSG00000138031|ENST00000679454|ADCY3	REV__ENSG00000138031|ENST00000679454|ADCY3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8140869140625	2	528.314692	1054.61483	0.20687	0.00010929	-1.1992	-0.00063356	-0.99234	-0.00052427	528.8138983692609	118.74	1.8195	118.72	118.15	119.97	-0.024147					433	229	2	0	0	0	0.45942	1	30871	30871		2.5775	1.0956	1	25102	+		26603	15896	15131	15132	33246	33246					0.08970799622352388
LRRRRGIRAVL	11	Unmodified	_LRRRRGIRAVL_					0	0	0			REV__ENST00000372728.3_1_X:102318578-102319143:-|nuORF	REV__ENST00000372728.3_1_X:102318578-102319143:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.30035400390625	3	455.972378	1364.8953	0.2423	0.00011048	1.0818	0.00049326	1.3241	0.00060374	455.9728316045967	30.022	0.53269	30.022	29.75	30.282	0					34	18	3	0	0	0	0.4112	1	5437	5437		9.7643	1.0125	1	117990	+		26604	20420	15132	15133	33247	33247					0.2274513561301319
LRRRTRRMRRR	11	Unmodified	_LRRRTRRMRRR_					0	0	0			REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.9292297363281	4	404.005196	1611.99168	-0.3204	-0.00012944	-0.4305	-0.00017392	-0.7509	-0.00030337	404.25633515205317	42.65	0.082615	42.65	42.595	42.678	0					4	2	2	0	0	0	0.33352	1	9303	9303		0.073264	0.073264	1	40924	+		26605	20874	15133	15134	33248	33248					0.21016379901288929
LRRRTRRMRRR	11	Unmodified	_LRRRTRRMRRR_					0	0	0			REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.92919921875	4	404.005196	1611.99168	-0.13796	-5.5738E-05	-2.1329	-0.00086171	-2.2709	-0.00091745	404.2551227826949	42.38	0.22247	42.471	42.385	42.607	0.091362					9	7	2	0	0	0	0.33352	1	9209	9209		0.073264	0.073264	1	104030	+		26606	20874	15133	15134	33249	33249					0.21016379901288929
LRRTARRTE	9	Unmodified	_LRRTARRTE_					0	0	0		ENST00000466599.1_1_7:133979532-133979616:-|nuORF	ENST00000466599.1_1_7:133979532-133979616:-|nuORF	ENST00000466599.1_1_7:133979532-133979616:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.8445434570312	2	579.844345	1157.67414	0.28942	0.00016782	0.40253	0.0002334	0.69195	0.00040122	579.8443354772405	92.514	0.68198	92.603	92.23	92.912	0.089195					80	50	2	0	0	0	0.34681	1	24570	24570		1.8442	0	1	282530			26607	10813	15134	15135	33250	33250					0.10160650845887176
LRRVFQGLE	9	Unmodified	_LRRVFQGLE_					0	0	0		CON__Q9Z2K1;CON__Q3ZAW8	CON__Q9Z2K1	CON__Q9Z2K1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.3271484375	2	559.327465	1116.64038	0.49043	0.00027431	-0.458	-0.00025617	0.032428	1.8138E-05	559.3271832851913	21.462	0.67223	21.362	21.101	21.773	-0.10034					60	23	4	0	0	0	0.29176	1	2834	2834		10.074	0	1	395710		+	26608	235	15135	15136	33251	33251					0.08672229354147021
LRRWDPSKAG	10	Unmodified	_LRRWDPSKAG_					0	0	0			REV__ENST00000496978.5_1_4:154125600-154143423:+|nuORF	REV__ENST00000496978.5_1_4:154125600-154143423:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.8037719726562	2	593.327996	1184.64144	0.56478	0.0003351	-0.8928	-0.00052972	-0.32802	-0.00019462	593.3274187176897	91.846	0.80493	91.846	91.533	92.338	0.00046539					76	52	2	0	0	0	0.31889	1	24419	24419		6.2058	0.47393	1	212490	+		26609	21469	15136	15137	33252	33252					0.056504437230159965
LRSDAIPIV	9	Unmodified	_LRSDAIPIV_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.E6206Gfs*23|1|0.69|ENSG00000183091|chr2:151505500-151505500|T/-|frameshift_variant;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.K4379*|1|0.19|ENSG00000183091|chr2:151565739-151565740|-/A|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2977294921875	2	492.297842	982.581131	0.39261	0.00019328	2.2376	0.0011016	2.6302	0.0012948	492.2975592666398	51.821	0.8308	51.869	51.53	52.361	0.048248					80	29	4	0	0	0	0.019245	1	12122	12122		65.235	1.6722	1	3160400			26610	7345	15137	15138	33253	33253					0.08914333339942004
LRSEDPLTL	9	Unmodified	_LRSEDPLTL_					0	0	0		nc|ENSG00000164318|Q63HQ2-3|EGFLAM;nc|ENSG00000164318|Q63HQ2-4|EGFLAM;ENSG00000164318|ENST00000322350|EGFLAM;nc|ENSG00000164318|Q63HQ2|EGFLAM	nc|ENSG00000164318|Q63HQ2-3|EGFLAM	nc|ENSG00000164318|Q63HQ2-3|EGFLAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2903442382812	2	522.290214	1042.56587	0.59823	0.00031245	-0.83999	-0.00043872	-0.24176	-0.00012627	522.2899780452509	40.438	0.65049	40.531	40.228	40.879	0.09267					45	23	3	0	0	0	0.14786	1	8635	8635		31.268	4.0451	1	513820			26611	5829	15138	15139	33254	33254					0.04629421752088092
LRSGKDPK	8	Unmodified	_LRSGKDPK_					0	0	0		nc|ENSG00000187013|Q86X59|LINC02875	nc|ENSG00000187013|Q86X59|LINC02875	nc|ENSG00000187013|Q86X59|LINC02875	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2265319824219	2	450.766709	899.518865	-0.022015	-9.9237E-06	-0.51554	-0.00023239	-0.53756	-0.00024231	450.76635512668344	15.772	0.4788	15.772	15.413	15.892	0					25	16	2	0	0	0	0.34378	1	1097	1097		3.9444	0	1	30617			26612	12885	15139	15140	33255	33255					0.06508606991599208
LRSIPNIG	8	Unmodified	_LRSIPNIG_					0	0	0			REV__nc|ENSG00000124214|O95793-2|STAU1	REV__nc|ENSG00000124214|O95793-2|STAU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.779296875	2	435.263802	868.513051	-1.5066	-0.00065579	-0.11072	-4.8194E-05	-1.6174	-0.00070398	435.2636235443526	34.838	0.61201	34.838	34.588	35.2	0					37	21	2	0	0	0	0.3415	1	6941	6941		5.2969	2.0156	1	218410	+		26613	15223	15140	15141	33256	33256					0.0735350847993459
LRSLKANQPQL	11	Unmodified	_LRSLKANQPQL_					0	0	0		ENST00000527416.2_1_14:95555309-95557645:-|nuORF	ENST00000527416.2_1_14:95555309-95557645:-|nuORF	ENST00000527416.2_1_14:95555309-95557645:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3775024414062	2	634.377686	1266.74082	0.22787	0.00014455	-0.18084	-0.00011472	0.047024	2.9831E-05	634.3777797867066	103.27	1.9164	103.27	102.78	104.7	0.0082703					426	271	3	0	0	0	0.44523	1	27556	27556		5.2969	0.39987	1	38547000			26614	11571	15141	15142	33257	33257					0.11811841617122809
LRSLLLHSL	9	Unmodified	_LRSLLLHSL_					0	0	0		ENSG00000197406|ENST00000510508|DIO3	ENSG00000197406|ENST00000510508|DIO3	ENSG00000197406|ENST00000510508|DIO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7560424804688	2	526.334759	1050.65496	0.65114	0.00034272	-0.64853	-0.00034135	0.0026017	1.3694E-06	526.3342818151203	55.425	0.45415	55.496	55.297	55.751	0.070885					22	16	2	0	0	0	0.24688	1	13290	13290		10.074	1.3285	1	233450			26615	7960	15142	15143	33258	33258					0.13166301502269562
LRSLLLHSL	9	Unmodified	_LRSLLLHSL_					0	0	0		ENSG00000197406|ENST00000510508|DIO3	ENSG00000197406|ENST00000510508|DIO3	ENSG00000197406|ENST00000510508|DIO3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	526.334759	1050.65496	0.45478	0.00023937	-0.36357	-0.00019136	0.091218	4.8011E-05	526.3345916175521	55.498	0.20817	55.479	55.408	55.616	-0.019081	-0.0072114	0.00017102	NaN	10.074	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155450			26616	7960	15142	15143							0.13166301502269562
LRSNNKPKE	9	Unmodified	_LRSNNKPKE_					0	0	0		nc|ENSG00000070729|Q14028-2|CNGB1;nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8108520507812	2	543.306729	1084.59891	0.50488	0.00027431	2.5726	0.0013977	3.0775	0.001672	543.8101075758373	26.91	0.82289	26.889	26.419	27.242	-0.02141					67	28	4	0	0	0	0.3208	1	4547	4547		5.7319	0.43497	1	219210			26617	936	15143	15144	33259	33259					0.059990485947992056
LRSPKTLQR	9	Unmodified	_LRSPKTLQR_					0	0	0		ENST00000558480.6_1_15:79294114-79296347:-|nuORF	ENST00000558480.6_1_15:79294114-79296347:-|nuORF	ENST00000558480.6_1_15:79294114-79296347:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.764404296875	2	549.840739	1097.66693	0.1048	5.7626E-05	0.15017	8.2569E-05	0.25497	0.0001402	549.840715511617	18.452	0.48179	18.394	18.199	18.681	-0.058174					28	16	2	0	0	0	0.25779	1	2001	2001		6.2058	0	1	120800			26618	11874	15144	15145	33260	33260					0.1219991824546014
LRSRYRSSPT	10	Unmodified	_LRSRYRSSPT_					0	0	0		nc|ENSG00000146842|Q96SK2-3|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;ENSG00000146842|ENST00000397622|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	nc|ENSG00000146842|Q96SK2-3|TMEM209	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.22650146484375	3	408.226549	1221.65782	-0.16111	-6.5768E-05	-1.0952	-0.0004471	-1.2563	-0.00051287	408.2263733170206	25.254	0.70691	25.254	25.091	25.798	0					63	23	4	0	0	0	0.31994	1	3974	3974		5.4027	1.4583	1	1053900			26619	4732	15145	15146	33261	33261					0.055855248891248266
LRSVVPLPSLR	11	Unmodified	_LRSVVPLPSLR_					0	0	0			REV__ENSG00000167548|ENST00000301067|KMT2D	REV__ENSG00000167548|ENST00000301067|KMT2D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.3163452148438	2	618.892972	1235.77139	0.1959	0.00012124	0.030916	1.9134E-05	0.22682	0.00014037	618.8931611725368	52.104	0.43608	52.104	51.86	52.296	0					26	15	2	0	0	0	0.32993	1	12257	12257		8.9762	3.6794	1	247080	+		26620	17391	15146	15147	33262	33262					0.16293620002170428
LRSYNYPYWRR	11	Unmodified	_LRSYNYPYWRR_					0	0	0			REV__ENSG00000144048|ENST00000272444|DUSP11	REV__ENSG00000144048|ENST00000272444|DUSP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2755126953125	3	525.27227	1572.79498	0.4238	0.00022261	1.2357	0.00064906	1.6595	0.00087167	525.2731911624446	31.589	1.838	31.632	30.824	32.662	0.042364					139	65	5	0	0	0	0.44598	1	5895	5895		5.1984	1.3525	1	4587400	+		26621	16219	15147	15148	33263	33263					0.03149433768680865
LRSYNYPYWRR	11	Unmodified	_LRSYNYPYWRR_					0	0	0			REV__ENSG00000144048|ENST00000272444|DUSP11	REV__ENSG00000144048|ENST00000272444|DUSP11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2476196289062	3	525.27227	1572.79498	0.4238	0.00022261	1.2357	0.00064906	1.6595	0.00087167	525.2731911624446	31.589	1.838	31.632	30.824	32.662	0.042364					139	65	5	0	0	0	0.3331	1	5901	5901		1.0136	0	1	4587400	+		26622	16219	15147	15148	33264	33264					0.03149433768680865
LRTSFNSPHL	10	Unmodified	_LRTSFNSPHL_					0	0	0		nc|ENSG998|Q9N2K0|HERV-H-ENH1;nc|ENSG997|Q9N2J8|HERV-H-ENH3	nc|ENSG998|Q9N2K0|HERV-H-ENH1;nc|ENSG997|Q9N2J8|HERV-H-ENH3	nc|ENSG997|Q9N2J8|HERV-H-ENH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135375976562	2	586.314554	1170.61456	0.17582	0.00010309	0.060708	3.5594E-05	0.23653	0.00013868	586.3142931263203	95.033	0.29019	95.115	95.031	95.321	0.082771					47	28	2	0	0	0	0.32033	1	25366	25366		3.5965	0	1	151110			26623	13025;13024	15148	15149	33265	33265					0.03607335111860266
LRTSRREIPR	10	Unmodified	_LRTSRREIPR_					0	0	0		HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|2|1|sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|2|1|sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|2|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3837890625	2	642.386377	1282.7582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.82	1	101.82	101.32	102.32	-0.0054703								0	0	0	0.37807	1	27170	27170		2.9952	0.26005	1				26624	12416	15149	15150	33266	33266					0.12813181942783558
LRTVPLLAAC	10	Unmodified	_LRTVPLLAAC_					0	0	0		nc|ENSG00000169570|Q8NBA8-2|DTWD2;ENSG00000169570|ENST00000510708|DTWD2	nc|ENSG00000169570|Q8NBA8-2|DTWD2	nc|ENSG00000169570|Q8NBA8-2|DTWD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8141479492188	2	528.815344	1055.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.77	1	115.74	115.24	116.24	-0.020988								0	0	0	0.36581	1	30011	30011		8.1555	2.4237	1				26625	6366	15150	15151	33267	33267					0.09055252876260056
LRTVYRRDV	9	Unmodified	_LRTVYRRDV_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;UBR3|p.G1350Afs*47|1|0.06|ENSG00000144357|chr2:170007007-170007007|G/-|frameshift_variant	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.34423828125	2	589.343646	1176.67274	0.31854	0.00018773	-0.21847	-0.00012875	0.10007	5.8975E-05	589.3432787476333	111.78	1.0147	111.79	111.64	112.65	0.0131					170	122	2	0	0	0	0.34923	1	29301	29301		1.4819	0.15237	1	104090			26626	4577	15151	15152	33268	33268					0.09147016757128767
LRVAEMAERP	10	Unmodified	_LRVAEMAERP_					0	0	0			REV__ENSG00000183668|ENST00000270077|PSG9	REV__ENSG00000183668|ENST00000270077|PSG9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.813720703125	2	586.31624	1170.61793	0.055119	3.2317E-05	-2.6698	-0.0015653	-2.6147	-0.001533	586.3145347192935	100.55	0.11198	100.59	100.51	100.62	0.038994					26	15	2	0	0	0	0.31926	1	26848	26848		5.7319	1.4026	1	97463	+		26627	18276	15152	15153	33269	33269					0.039442618941848195
LRVIAKPKN	9	Unmodified	_LRVIAKPKN_					0	0	0		nc|ENSG00000130202|Q92692-2|NECTIN2;ENSG00000130202|ENST00000252483|NECTIN2	nc|ENSG00000130202|Q92692-2|NECTIN2	nc|ENSG00000130202|Q92692-2|NECTIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7843627929688	2	519.842751	1037.67095	0.60232	0.00031311	-0.25036	-0.00013015	0.35197	0.00018297	519.8425473470442	55.072	0.59572	55.072	54.864	55.46	0					30	21	2	0	0	0	0.25066	1	13151	13151		7.2892	0	1	251330			26628	3457	15153	15154	33270	33270					0.15362007739167893
LRWLFGSDWDR	11	Unmodified	_LRWLFGSDWDR_					0	0	0			REV__ENST00000435306.1_1_X:102942274-102942946:+|nuORF	REV__ENST00000435306.1_1_X:102942274-102942946:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.63458251953125	3	484.245721	1449.71533	0.4004	0.00019389	-1.209	-0.00058546	-0.8086	-0.00039156	484.24500583822635	90.034	0.129	90.035	89.986	90.115	0.00039673					15	10	2	0	0	0	0.3333	1	23856	23856		1.3296	0.55311	1	73492	+		26629	20996	15154	15155	33271	33271					0.008463670947094215
LRWNIWASSVK	11	Unmodified	_LRWNIWASSVK_					0	0	0			REV__nc|ENSG00000257242|G3V211-2|LINC01619	REV__nc|ENSG00000257242|G3V211-2|LINC01619	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.26556396484375	3	453.922578	1358.7459	0.2974	0.000135	-0.83237	-0.00037783	-0.53497	-0.00024284	453.9221250744433	21.082	0.6518	21.029	20.749	21.401	-0.05291					34	22	2	0	0	0	0.3325	1	2672	2672		2.2527	0.66045	1	89755	+		26630	23220	15155	15156	33272	33272					0.0808814547970087
LRWNIWASSVK	11	Unmodified	_LRWNIWASSVK_					0	0	0			REV__nc|ENSG00000257242|G3V211-2|LINC01619	REV__nc|ENSG00000257242|G3V211-2|LINC01619	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	453.922578	1358.7459	0.28032	0.00012725	-0.56031	-0.00025434	-0.27998	-0.00012709	453.9222322401184	21.008	0.56619	21.008	20.772	21.338	0	-0.010568	0.00028884	NaN	2.2527	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71706	+		26631	23220	15155	15156							0.0808814547970087
LRWTQLMPVL	10	Unmodified	_LRWTQLMPVL_					0	0	0		ENST00000560002.5_1_15:56945693-56945987:-|nuORF	ENST00000560002.5_1_15:56945693-56945987:-|nuORF	ENST00000560002.5_1_15:56945693-56945987:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.577392578125	3	419.577643	1255.7111	-0.32664	-0.00013705	0.036009	1.5109E-05	-0.29063	-0.00012194	419.57745474409666	15.138	0.75449	15.138	14.925	15.679	0					69	25	3	0	0	0	0.33753	1	938	938		14.957	2.0846	1	345790			26632	11891	15156	15157	33273	33273					0.09347186347417846
LRWTQLMPVL	10	Unmodified	_LRWTQLMPVL_					0	0	0		ENST00000560002.5_1_15:56945693-56945987:-|nuORF	ENST00000560002.5_1_15:56945693-56945987:-|nuORF	ENST00000560002.5_1_15:56945693-56945987:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.57720947265625	3	419.577643	1255.7111	-0.12005	-5.037E-05	-0.34992	-0.00014682	-0.46997	-0.00019719	419.5773340269598	15.266	0.76622	15.156	14.93	15.696	-0.10982					79	26	4	0	0	0	0.33753	1	965	965		14.957	0	1	364450			26633	11891	15156	15157	33274	33274					0.09347186347417846
LRWTQLMPVL	10	Unmodified	_LRWTQLMPVL_					0	0	0		ENST00000560002.5_1_15:56945693-56945987:-|nuORF	ENST00000560002.5_1_15:56945693-56945987:-|nuORF	ENST00000560002.5_1_15:56945693-56945987:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.5772705078125	3	419.577643	1255.7111	-0.18056	-7.5758E-05	-0.17013	-7.1384E-05	-0.35069	-0.00014714	419.5773380973105	15.273	0.76474	15.209	15.041	15.806	-0.064413					72	25	3	0	0	0	0.26354	1	977	977		24.882	4.0104	1	518880			26634	11891	15156	15157	33275	33275					0.09347186347417846
LRWTQLMPVL	10	Unmodified	_LRWTQLMPVL_					0	0	0		ENST00000560002.5_1_15:56945693-56945987:-|nuORF	ENST00000560002.5_1_15:56945693-56945987:-|nuORF	ENST00000560002.5_1_15:56945693-56945987:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	419.577643	1255.7111	-0.32664	-0.00013705	0.036009	1.5109E-05	-0.29063	-0.00012194	419.57745474409666	15.138	0.75449	15.138	14.925	15.679	0	-0.02991	0.000301	NaN	24.882	69	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345790			26635	11891	15156	15157							0.09347186347417846
LRWWQWHRLKL	11	Unmodified	_LRWWQWHRLKL_					0	0	0			REV__nc|ENSG00000105357|Q7Z406-5|MYH14	REV__nc|ENSG00000105357|Q7Z406-5|MYH14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.78521728515625	4	406.236119	1620.91537	-0.22659	-9.2051E-05	0.91668	0.00037239	0.69008	0.00028034	406.2358071767177	26.217	0.48497	26.217	25.955	26.44	0					23	16	2	0	0	0	0.33347	1	4283	4283		0.08335	0	1	61028	+		26636	14451	15157	15158	33276	33276					0.12974886552956377
LRYIVRLVWR	10	Unmodified	_LRYIVRLVWR_					0	0	0		nc|ENSG00000153094|O43521-12|BCL2L11;nc|ENSG00000153094|O43521-20|BCL2L11;nc|ENSG00000153094|O43521-18|BCL2L11;nc|ENSG00000153094|O43521-3|BCL2L11;nc|ENSG00000153094|O43521-2|BCL2L11;nc|ENSG00000153094|O43521-19|BCL2L11;ENSG00000153094|ENST00000393256|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.6238708496094	3	458.622463	1372.84556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.32	1	100.31	99.81	100.81	-0.006897								0	0	0	0.3773	1	26842	26842		3.3196	0.68841	1				26637	12765	15158	15159	33277	33277					0.17405007884349288
LRYIVRLVWR	10	Unmodified	_LRYIVRLVWR_					0	0	0		nc|ENSG00000153094|O43521-12|BCL2L11;nc|ENSG00000153094|O43521-20|BCL2L11;nc|ENSG00000153094|O43521-18|BCL2L11;nc|ENSG00000153094|O43521-3|BCL2L11;nc|ENSG00000153094|O43521-2|BCL2L11;nc|ENSG00000153094|O43521-19|BCL2L11;ENSG00000153094|ENST00000393256|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.62408447265625	3	458.622463	1372.84556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.45	1	100.44	99.938	100.94	-0.006897								0	0	0	0.38104	1	26871	26871		1.7423	0.52744	1				26638	12765	15158	15159	33278	33278					0.17405007884349288
LRYSDSVGRVS	11	Unmodified	_LRYSDSVGRVS_					0	0	0		ENSG00000162949|ENST00000295055|CAPN13	ENSG00000162949|ENST00000295055|CAPN13	ENSG00000162949|ENST00000295055|CAPN13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5836486816406	3	413.554443	1237.6415	-0.087884	-3.6345E-05	-1.8578	-0.00076829	-1.9457	-0.00080463	413.5537964611975	35.34	0.24836	35.416	35.261	35.509	0.075306					10	8	2	0	0	0	0.3325	1	7063	7063		4.1166	1.3814	1	149120			26639	5633	15159	15160	33279	33279					0.03218398932381206
LRYVRGAMTD	10	Unmodified	_LRYVRGAMTD_					0	0	0			REV__nc|ENSG00000165164|Q6ZTR5-2|CFAP47	REV__nc|ENSG00000165164|Q6ZTR5-2|CFAP47	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.3095092773438	2	591.308415	1180.60228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.592	1	31.634	31.134	32.134	0.042364								0	0	0	0.37869	1	5922	5922		2.7352	0	1		+		26640	17211	15160	15161	33280	33280					0.019199753771545147
LRYWWRRC	8	Unmodified	_LRYWWRRC_					0	0	0		nc|ENSG00000105341|Q9NW81-2|DMAC2;nc|ENSG00000105341|Q9NW81-6|DMAC2;nc|ENSG00000105341|Q9NW81-3|DMAC2	nc|ENSG00000105341|Q9NW81-2|DMAC2	nc|ENSG00000105341|Q9NW81-2|DMAC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8216552734375	2	619.821827	1237.6291	0.0066722	4.1356E-06	0.70615	0.00043769	0.71282	0.00044182	619.8219932210375	22.446	0.57188	22.359	22.086	22.658	-0.087608					37	20	3	0	0	0	0.34441	1	3191	3191		0	0	1	74883			26641	12635	15161	15162	33281	33281					0.01979128778998529
LSAAAGPAPLP	11	Unmodified	_LSAAAGPAPLP_					0	0	0			REV__ENST00000319296.9_1_16:30418714-30419448:+|nuORF	REV__ENST00000319296.9_1_16:30418714-30419448:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7663269042969	2	482.776742	963.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.743	1	40.743	40.243	41.243	0								0	0	0	0.27815	1	8717	8717		24.021	0	1		+		26642	19956	15162	15163	33282	33282					0.05570357931537728
LSAAAPLLL	9	Unmodified	_LSAAAPLLL_					0	0	0			REV__ENSG00000249115|ENST00000203166|HAUS5	REV__ENSG00000249115|ENST00000203166|HAUS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7785949707031	2	434.778754	867.542954	0.1933	8.4044E-05	-0.19226	-8.3589E-05	0.0010458	4.5471E-07	434.7786374644741	74.807	1.1938	74.807	74.6	75.794	0					75	42	3	0	0	0	0.155	1	19253	19253		30.225	1.738	1	1100100	+		26643	19210	15163	15164	33283	33283					0.10388447425293634
LSAAAPLLL	9	Unmodified	_LSAAAPLLL_					0	0	0			REV__ENSG00000249115|ENST00000203166|HAUS5	REV__ENSG00000249115|ENST00000203166|HAUS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7787780761719	2	434.778754	867.542954	0.21997	9.564E-05	-0.23369	-0.0001016	-0.013712	-5.9615E-06	434.77862725900275	74.912	0.82729	74.881	74.642	75.47	-0.031487					60	30	3	0	0	0	0.155	1	19235	19235		30.225	1.738	1	1154000	+		26644	19210	15163	15164	33284	33284					0.10388447425293634
LSAARQRLQ	9	Unmodified	_LSAARQRLQ_					0	0	0		ENST00000532904.5_1_11:62445243-62446247:-|nuORF;ENST00000533908.5_1_11:62445382-62446470:-|nuORF;ENST00000525717.5_1_11:62445243-62446470:-|nuORF;ENST00000524762.5_1_11:62445008-62446470:-|nuORF;ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1	ENST00000532904.5_1_11:62445243-62446247:-|nuORF	ENST00000532904.5_1_11:62445243-62446247:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.8091430664062	2	521.809439	1041.60433	-0.029625	-1.5458E-05	-0.30774	-0.00016058	-0.33737	-0.00017604	521.8093736426506	12.672	0.24275	12.605	12.52	12.763	-0.067495					10	7	2	0	0	0	0.34923	1	211	211		1.4819	0	1	52623			26645	5552	15164	15165	33285	33285					0.0851877217726269
LSAARQRLQ	9	Unmodified	_LSAARQRLQ_					0	0	0		ENST00000532904.5_1_11:62445243-62446247:-|nuORF;ENST00000533908.5_1_11:62445382-62446470:-|nuORF;ENST00000525717.5_1_11:62445243-62446470:-|nuORF;ENST00000524762.5_1_11:62445008-62446470:-|nuORF;ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1	ENST00000532904.5_1_11:62445243-62446247:-|nuORF	ENST00000532904.5_1_11:62445243-62446247:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.809439	1041.60433	0.099932	5.2145E-05	-0.38761	-0.00020226	-0.28768	-0.00015011	521.8092674989966	12.644	0.22821	12.644	12.555	12.783	0	0.040216	-8.9538E-05	NaN	1.4819	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35407			26646	5552	15164	15165							0.0851877217726269
LSAARQRLQ	9	Unmodified	_LSAARQRLQ_					0	0	0		ENST00000532904.5_1_11:62445243-62446247:-|nuORF;ENST00000533908.5_1_11:62445382-62446470:-|nuORF;ENST00000525717.5_1_11:62445243-62446470:-|nuORF;ENST00000524762.5_1_11:62445008-62446470:-|nuORF;ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1	ENST00000532904.5_1_11:62445243-62446247:-|nuORF	ENST00000532904.5_1_11:62445243-62446247:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	521.809439	1041.60433	0.09832	5.1304E-05	-0.20777	-0.00010842	-0.10945	-5.7112E-05	521.8093924584074	12.662	0.26822	12.562	12.46	12.729	-0.099291	-0.041179	9.8144E-05	NaN	1.4819	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43468			26647	5552	15164	15165							0.0851877217726269
LSAARQRLQ	9	Unmodified	_LSAARQRLQ_					0	0	0		ENST00000532904.5_1_11:62445243-62446247:-|nuORF;ENST00000533908.5_1_11:62445382-62446470:-|nuORF;ENST00000525717.5_1_11:62445243-62446470:-|nuORF;ENST00000524762.5_1_11:62445008-62446470:-|nuORF;ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1	ENST00000532904.5_1_11:62445243-62446247:-|nuORF	ENST00000532904.5_1_11:62445243-62446247:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	521.809439	1041.60433	-0.029625	-1.5458E-05	-0.30774	-0.00016058	-0.33737	-0.00017604	521.8093736426506	12.672	0.24275	12.605	12.52	12.763	-0.067495	0.00096313	-6.1916E-06	NaN	1.4819	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52623			26648	5552	15164	15165							0.0851877217726269
LSAAYLPRM	9	Unmodified	_LSAAYLPRM_					0	0	0		ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.795654296875	2	511.278595	1020.54264	0.65048	0.00033258	-2.5076	-0.0012821	-1.8572	-0.00094953	511.2774179442737	47.051	0.2833	47.051	46.904	47.187	0					11	9	2	0	0	0	0.22596	1	10643	10643		21.747	13.153	1	117400			26649	1775	15165	15166	33286	33286					0.033187044337751104
LSAELHLPK	9	Unmodified	_LSAELHLPK_					0	0	0			REV__nc|ENSG00000137486|P49407-2|ARRB1	REV__nc|ENSG00000137486|P49407-2|ARRB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7793884277344	2	504.297842	1006.58113	0.3422	0.00017257	2.5297	0.0012757	2.8719	0.0014483	504.300130320975	68.895	0.50417	68.876	68.68	69.184	-0.019157					41	17	3	0	0	0	0.1854	1	17425	17425		13.906	0.86358	1	127400	+		26650	15863	15166	15167	33287	33287					0.07810333339944009
LSAFLHAL	8	Unmodified	_LSAFLHAL_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1;ENST00000588806.1_1_17:40665776-40673135:+|nuORF;ENSG00000105929|ENST00000310018|ATP6V0A4;ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1	nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000105929|ENST00000310018|ATP6V0A4;ENST00000533005.5_1_11:67811756-67818283:+|nuORF	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2540283203125	2	436.255446	870.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.329	1	97.329	96.829	97.829	0								0	0	0	0.37078	1	26026	26026		5.2307	0	1				26651	562;2037;2326	15167	15168	33288	33288					0.055910075939777926
LSAGALVLEL	10	Unmodified	_LSAGALVLEL_					0	0	0			REV__nc|ENSG00000145194|P0DPD6-3|ECE2	REV__nc|ENSG00000145194|P0DPD6-3|ECE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.787353515625	2	493.30005	984.585547	0.52005	0.00025654	0.05846	2.8838E-05	0.57851	0.00028538	493.3000076890778	49.253	0.92336	49.253	48.944	49.868	0					103	33	4	0	0	0	0.22916	1	11414	11414		29.082	1.8583	1	3281600	+		26652	16281	15168	15169	33289	33289					0.09263797762855575
LSAGSIQVLR	10	Unmodified	_LSAGSIQVLR_					0	0	0			REV__ENST00000504253.1_1_2:178957667-178969190:-|nuORF	REV__ENST00000504253.1_1_2:178957667-178969190:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7958984375	2	522.314023	1042.61349	0.63291	0.00033058	-0.8758	-0.00045744	-0.2429	-0.00012687	522.3135727530105	29.712	0.67344	29.712	29.244	29.917	0					38	23	2	0	0	0	0.31358	1	5240	5240		13.906	3.0821	1	119490	+		26653	21731	15169	15170	33290	33290					0.0938912074293512
LSAHDTIAQK	10	Unmodified	_LSAHDTIAQK_					0	0	0		MPP4|p.N441Kfs*2|1|0.06|ENSG00000082126|chr2:201654898-201654899|-/A|frameshift_variant;nc|ENSG00000082126|Q96JB8-2|MPP4;ENSG00000082126|ENST00000409474|MPP4	MPP4|p.N441Kfs*2|1|0.06|ENSG00000082126|chr2:201654898-201654899|-/A|frameshift_variant	MPP4|p.N441Kfs*2|1|0.06|ENSG00000082126|chr2:201654898-201654899|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8115234375	2	542.293288	1082.57202	0.46137	0.0002502	2.9462	0.0015977	3.4075	0.0018479	542.2946075113882	38.821	0.55181	38.913	38.675	39.226	0.09267					25	19	2	0	0	0	0.31867	1	8107	8107		18.146	0.7037	1	206170			26654	1192	15170	15171	33291	33291					0.03403939983604687
LSAIEVERPSI	11	Unmodified	_LSAIEVERPSI_					0	0	0		ENST00000373856.7_1_X:70504267-70504845:+|nuORF	ENST00000373856.7_1_X:70504267-70504845:+|nuORF	ENST00000373856.7_1_X:70504267-70504845:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.55670166015625	3	405.231077	1212.6714	-0.34388	-0.00013935	-1.5224	-0.00061691	-1.8662	-0.00075625	405.22925018482925	22.877	0.42455	22.79	22.568	22.993	-0.087608					23	14	2	0	0	0	0.33122	1	3319	3319		7.0371	1.9896	1	43203			26655	9880	15171	15172	33292	33292					0.07357337877715509
LSAISRRSK	9	Unmodified	_LSAISRRSK_					0	0	0		ENST00000465645.1_1_1:28564388-28564475:+|nuORF	ENST00000465645.1_1_1:28564388-28564475:+|nuORF	ENST00000465645.1_1_1:28564388-28564475:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8039855957031	2	509.311815	1016.60908	0.42663	0.00021729	0.48456	0.00024679	0.91119	0.00046408	509.3118281623747	89.251	0.40424	89.251	88.965	89.369	0					39	17	3	0	0	0	0.25622	1	23557	23557		3.9444	3.9444	1	210830			26656	10802	15172	15173	33293	33293					0.10143656320042282
LSAISRRSK	9	Unmodified	_LSAISRRSK_					0	0	0		ENST00000465645.1_1_1:28564388-28564475:+|nuORF	ENST00000465645.1_1_1:28564388-28564475:+|nuORF	ENST00000465645.1_1_1:28564388-28564475:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	509.311815	1016.60908	0.36294	0.00018485	0.77153	0.00039295	1.1345	0.0005778	509.3121684718507	89.192	0.70926	89.191	88.78	89.489	-0.00080872	-0.029955	0.00019708	NaN	3.9444	48	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168170			26657	10802	15172	15173							0.10143656320042282
LSALEKSIM	9	Unmodified	_LSALEKSIM_					0	0	0			REV__ENST00000331835.9_2_1:87328934-87329003:-|nuORF	REV__ENST00000331835.9_2_1:87328934-87329003:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3039855957031	2	496.27826	990.541968	0.41171	0.00020432	-0.84126	-0.0004175	-0.42954	-0.00021317	496.27777292006346	75.766	0.43758	75.734	75.443	75.881	-0.031487					25	15	2	0	0	0	0.1939	1	19453	19453		24.021	0	1	103250	+		26658	20044	15173	15174	33294	33294					0.04631864994064472
LSALKGLAEN	10	Unmodified	_LSALKGLAEN_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B;ENST00000467978.1_1_2:37268272-37283611:-|nuORF	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2769775390625	2	508.292756	1014.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.748	1	47.748	47.248	48.248	0								0	0	0	0.28989	1	10868	10868		29.082	5.061	1				26659	403	15174	15175	33295	33295					0.06425725614701605
LSALKGLAEN	10	Unmodified	_LSALKGLAEN_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B;ENST00000467978.1_1_2:37268272-37283611:-|nuORF	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2768249511719	2	508.292756	1014.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.676	1	47.723	47.223	48.223	0.047523								0	0	0	0.28989	1	10844	10844		29.082	0.59474	1				26660	403	15174	15175	33296	33296					0.06425725614701605
LSALNLDSLF	10	Unmodified	_LSALNLDSLF_					0	0	0			REV__ENST00000482248.7_1_3:49133464-49135771:-|nuORF	REV__ENST00000482248.7_1_3:49133464-49135771:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2797241210938	2	546.800414	1091.58628	0.51995	0.00028431	-1.0631	-0.00058131	-0.54316	-0.000297	546.7993512575785	52.999	0.4315	52.999	52.717	53.148	0					27	15	3	0	0	0	0.27979	1	12452	12452		27.629	5.8822	1	613080	+		26661	17689	15175	15176	33297	33297					0.04414592411899321
LSALPDRR	8	Unmodified	_LSALPDRR_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.75201416015625	2	464.272158	926.529764	-0.28033	-0.00013015	0.46499	0.00021588	0.18466	8.5732E-05	464.272344754751	76.011	0.71875	76.011	75.592	76.31	0					30	25	2	0	0	0	0.34247	1	19478	19478		4.756	0	1	160910			26662	2100	15176	15177	33298	33298					0.06356009365902082
LSALQYPLL	9	Unmodified	_LSALQYPLL_					0	0	0		ENST00000409968.5_3_2:137917807-137917906:+|nuORF	ENST00000409968.5_3_2:137917807-137917906:+|nuORF	ENST00000409968.5_3_2:137917807-137917906:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7534484863281	2	509.302593	1016.59063	0.2842	0.00014475	-0.21185	-0.0001079	0.072352	3.6849E-05	509.3021651966703	57.059	0.60062	57.138	56.829	57.43	0.078674					42	21	3	0	0	0	0.2322	1	13773	13773		14.838	2.3067	1	331940			26663	10264	15177	15178	33299	33299					0.08300101625468415
LSANEQCRVAF	11	Unmodified	_LSANEQCRVAF_					0	0	0		nc|ENSG00000160323|Q76LX8-3|ADAMTS13	nc|ENSG00000160323|Q76LX8-3|ADAMTS13	nc|ENSG00000160323|Q76LX8-3|ADAMTS13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.755126953125	3	413.204645	1236.59211	-0.073148	-3.0225E-05	0.75659	0.00031262	0.68344	0.0002824	413.2049464754837	57.915	0.46892	57.915	57.718	58.187	0					21	16	2	0	0	0	0.3259	1	13987	13987		7.4771	1.2852	1	210030			26664	12791	15178	15179	33300	33300					-0.016726323480952487
LSANEQCRVAF	11	Unmodified	_LSANEQCRVAF_					0	0	0		nc|ENSG00000160323|Q76LX8-3|ADAMTS13	nc|ENSG00000160323|Q76LX8-3|ADAMTS13	nc|ENSG00000160323|Q76LX8-3|ADAMTS13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.755126953125	3	413.204645	1236.59211	0.2804	0.00011586	0.22078	9.1228E-05	0.50119	0.00020709	413.2047123081708	57.625	0.39894	57.711	57.598	57.997	0.085617					25	14	2	0	0	0	0.29118	1	13945	13945		17.049	4.176	1	189630			26665	12791	15178	15179	33301	33301					-0.016726323480952487
LSANEQCRVAF	11	Unmodified	_LSANEQCRVAF_					0	0	0		nc|ENSG00000160323|Q76LX8-3|ADAMTS13	nc|ENSG00000160323|Q76LX8-3|ADAMTS13	nc|ENSG00000160323|Q76LX8-3|ADAMTS13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.75506591796875	3	413.204645	1236.59211	0.44098	0.00018222	0.42805	0.00017687	0.86904	0.00035909	413.20495044605593	58.174	0.53917	58.157	57.928	58.467	-0.0172					31	19	2	0	0	0	0.32667	1	14020	14020		10.315	7.684	1	270760			26666	12791	15178	15179	33302	33302					-0.016726323480952487
LSANRVNSINI	11	Unmodified	_LSANRVNSINI_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8387451171875	2	600.838394	1199.66223	0.21058	0.00012653	0.31561	0.00018963	0.52619	0.00031616	600.8384694170785	19.176	0.29242	19.12	18.961	19.253	-0.055693					15	9	2	0	0	0	0.46969	1	2144	2144		2.086	0	1	42439			26667	8008	15179	15180	33303	33303					0.0703898931205913
LSAPGVLKV	9	Unmodified	_LSAPGVLKV_					0	0	0		nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL	nc|ENSG00000157927|Q96JH8-1|RADIL	nc|ENSG00000157927|Q96JH8-1|RADIL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.2731628417969	2	442.284203	882.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.165	1	49.21	48.71	49.71	0.044891								0	0	0	0.22377	1	11306	11306		14.838	2.3067	1				26668	5334	15180	15181	33304	33304					0.10787849799555715
LSAQVKPH	8	Unmodified	_LSAQVKPH_					0	0	0			REV__ENST00000418852.2_1_9:74722934-74723045:-|nuORF	REV__ENST00000418852.2_1_9:74722934-74723045:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.8862609863281	2	440.255977	878.497401	-0.28305	-0.00012462	0.60691	0.00026719	0.32385	0.00014258	440.2560678658181	13.841	0.46782	13.736	13.435	13.903	-0.10466					23	16	2	0	0	0	0.34408	1	531	531		2.3027	0.24298	1	17077	+		26669	20837	15181	15182	33305	33305					0.05329221962904285
LSARDELFTWL	11	Unmodified	_LSARDELFTWL_					0	0	0			REV__ENSG00000183576|ENST00000331768|SETD3	REV__ENSG00000183576|ENST00000331768|SETD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2633056640625	3	450.906594	1349.69795	0.051972	2.3435E-05	2.2489	0.001014	2.3009	0.0010375	450.90769121080456	38.983	0.41595	39.076	38.862	39.278	0.09267					28	14	4	0	0	0	0.33122	1	8177	8177		7.0371	4.1938	1	443210	+		26670	18271	15182	15183	33306	33306					0.03709026769047341
LSARRSGP	8	Unmodified	_LSARRSGP_					0	0	0			REV__ENST00000350498.7_1_7:99006166-99006442:-|nuORF	REV__ENST00000350498.7_1_7:99006166-99006442:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2431335449219	2	422.243401	842.472249	-0.38118	-0.00016095	0.283	0.00011949	-0.098179	-4.1456E-05	422.24336952918344	13.296	0.45017	13.296	13.147	13.597	0					35	15	3	0	0	0	0.4354	1	386	386		10.824	0	1	181010	+		26671	20162	15183	15184	33307	33307					0.04471167160340883
LSASAISPAL	10	Unmodified	_LSASAISPAL_					0	0	0		ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.78607177734375	2	465.26875	928.522947	-0.21708	-0.000101	-2.3616	-0.0010988	-2.5787	-0.0011998	465.2671300430727	34.14	0.58366	34.207	34.012	34.595	0.06636					28	20	2	0	0	0	0.30586	1	6762	6762		19.257	4.4187	1	153740			26672	2085	15184	15185	33308	33308					0.055826516946467564
LSASFLLT	8	Unmodified	_LSASFLLT_					0	0	0		ENSG00000197386|ENST00000355072|HTT;ENST00000510626.5_1_4:3131970-3189635:+|nuORF;ENST00000311350.7_1_7:35734046-35734675:-|nuORF;HTT|p.L739Pfs*14|1|0.1|ENSG00000197386|chr4:3131752-3131758|CTCTTGA/-|frameshift_variant	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2471923828125	2	426.247286	850.48002	-0.039081	-1.6658E-05	0.11001	4.6889E-05	0.070924	3.0231E-05	426.24724389152914	70.981	1.0252	70.981	70.406	71.431	0					71	36	3	0	0	0	0.23581	1	18097	18097		38.151	0	1	553020			26673	7959	15185	15186	33309	33309					0.04879881637236849
LSATKRKGAI	10	Unmodified	_LSATKRKGAI_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.E1017Rfs*5|1|0.04|ENSG00000047410|chr1:186346182-186346183|-/G|frameshift_variant;nc|ENSG00000047410|P12270-2|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8187866210938	2	522.82984	1043.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.626	1	39.718	39.218	40.218	0.09267								0	0	0	0.34454	1	8377	8377		17.113	0.1706	1				26674	631	15186	15187	33310	33310					0.1250511349687713
LSATLSQQV	9	Unmodified	_LSATLSQQV_					0	0	0		ENST00000424196.5_2_3:184033526-184033565:+|nuORF	ENST00000424196.5_2_3:184033526-184033565:+|nuORF	ENST00000424196.5_2_3:184033526-184033565:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7459716796875	2	473.763832	945.513111	-0.0056096	-2.6576E-06	0.15409	7.3003E-05	0.14848	7.0346E-05	473.7637983103756	16.422	0.36039	16.422	16.214	16.574	0					20	12	2	0	0	0	0.25706	1	1325	1325		6.7232	0.51738	1	47668			26675	10393	15187	15188	33311	33311					0.038174636892904346
LSAVDRAL	8	Unmodified	_LSAVDRAL_					0	0	0			REV__ENST00000543164.5_1_12:6602847-6602940:-|nuORF	REV__ENST00000543164.5_1_12:6602847-6602940:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.2044982910156	2	422.747985	843.481417	0.021421	9.0557E-06	-0.44553	-0.00018835	-0.42411	-0.00017929	422.74761312553	29.977	0.40274	29.99	29.685	30.088	0.012266					17	13	2	0	0	0	0.33661	1	5453	5453		19.257	1.1106	1	58885	+		26676	22146	15188	15189	33312	33312					0.053415157259905754
LSAVISLAPL	10	Unmodified	_LSAVISLAPL_					0	0	0		ENSG00000157219|ENST00000287907|HTR5A	ENSG00000157219|ENST00000287907|HTR5A	ENSG00000157219|ENST00000287907|HTR5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.7431335449219	2	492.310418	982.606283	0.092832	4.5702E-05	0.66838	0.00032905	0.76121	0.00037475	492.3105348090311	61.978	0.44028	62.075	61.867	62.307	0.096989					20	15	2	0	0	0	0.30586	1	15299	15299		19.257	3.4098	1	111350			26677	5290	15189	15190	33313	33313					0.11428388142508084
LSAYNGLSLK	10	Unmodified	_LSAYNGLSLK_					0	0	0			REV__nc|ENSG00000163092|A4UGR9-4|XIRP2	REV__nc|ENSG00000163092|A4UGR9-4|XIRP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3005981445312	2	533.300581	1064.58661	0.63154	0.0003368	-0.76946	-0.00041035	-0.13791	-7.355E-05	533.2999991492574	57.023	0.8513	57.003	56.729	57.58	-0.019077					76	30	4	0	0	0	0.11865	1	13693	13693		43.982	5.8063	1	2929800	+		26678	23056	15190	15191	33314	33314					0.05690012131753974
LSAYVSYGGL	10	Unmodified	_LSAYVSYGGL_					0	0	0		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8211059570312	2	515.266207	1028.51786	0.36867	0.00018996	0.55677	0.00028688	0.92543	0.00047684	515.2663503440905	62.765	0.94013	62.765	62.424	63.364	0					46	34	2	0	0	0	0.25875	1	15470	15470		19.257	4.4187	1	142720			26679	5750	15191	15192	33315	33315					0.004743478320506256
LSCEWLSSE	9	Unmodified	_LSCEWLSSE_					0	0	0			REV__ENST00000488261.6_3_10:135269754-135270707:+|nuORF	REV__ENST00000488261.6_3_10:135269754-135270707:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3117065429688	2	527.231507	1052.44846	0.19785	0.00010431	-3.4994	-0.001845	-3.3016	-0.0017407	527.2299698370252	14.403	0.16934	14.403	14.279	14.448	0					7	5	2	0	0	0	0.25066	1	720	720		11.64	3.047	1	28794	+		26680	19058	15192	15193	33316	33316					-0.07566479179035923
LSCFSVSTII	10	Unmodified	_LSCFSVSTII_					0	0	0		ENST00000532485.5_1_11:76734550-76734952:+|nuORF	ENST00000532485.5_1_11:76734550-76734952:+|nuORF	ENST00000532485.5_1_11:76734550-76734952:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.795654296875	2	535.283543	1068.55253	0.62059	0.00033219	0.071984	3.8532E-05	0.69258	0.00037072	535.2834838972856	50.172	0.8457	50.172	49.868	50.713	0					77	30	4	0	0	0	0.3156	1	11775	11775		6.7232	6.7232	1	3988300			26681	11639	15193	15194	33317	33317					0.020998476485146966
LSCFSVSTII	10	Unmodified	_LSCFSVSTII_					0	0	0		ENST00000532485.5_1_11:76734550-76734952:+|nuORF	ENST00000532485.5_1_11:76734550-76734952:+|nuORF	ENST00000532485.5_1_11:76734550-76734952:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.796142578125	2	535.283543	1068.55253	0.76369	0.00040879	0.049139	2.6304E-05	0.81283	0.00043509	535.2834553133833	50.141	0.99389	50.186	49.877	50.871	0.044891					82	36	4	0	0	0	0.31629	1	11768	11768		10.074	1.4806	1	4206400			26682	11639	15193	15194	33318	33318					0.020998476485146966
LSCFSVSTII	10	Unmodified	_LSCFSVSTII_					0	0	0		ENST00000532485.5_1_11:76734550-76734952:+|nuORF	ENST00000532485.5_1_11:76734550-76734952:+|nuORF	ENST00000532485.5_1_11:76734550-76734952:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7957763671875	2	535.283543	1068.55253	0.92426	0.00049474	-0.28562	-0.00015289	0.63864	0.00034185	535.2832982891096	50.151	0.996	50.172	49.85	50.846	0.020691					88	36	4	0	0	0	0.3156	1	11785	11785		3.5965	0	1	3971900			26683	11639	15193	15194	33319	33319					0.020998476485146966
LSCKFNQLL	9	Unmodified	_LSCKFNQLL_					0	0	0		ENST00000506918.1_1_4:155463230-155466996:-|nuORF	ENST00000506918.1_1_4:155463230-155466996:-|nuORF	ENST00000506918.1_1_4:155463230-155466996:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7913208007812	2	533.291702	1064.56885	0.37661	0.00020084	0.88835	0.00047375	1.265	0.0006746	533.2921904045493	47.095	0.95989	47.148	46.79	47.75	0.052574					50	35	2	0	0	0	0.25066	1	10573	10573		11.64	4.3511	1	362350			26684	11332	15194	15195	33320	33320					0.03914973605265004
LSCLKTLVR	9	Unmodified	_LSCLKTLVR_					0	0	0		ENST00000465761.1_1_20:43561720-43565607:+|nuORF	ENST00000465761.1_1_20:43561720-43565607:+|nuORF	ENST00000465761.1_1_20:43561720-43565607:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8009643554688	2	516.815344	1031.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.147	1	30.147	29.647	30.647	0								0	0	0	0.20651	1	5481	5481		20.415	0	1				26685	10803	15195	15196	33321	33321					0.10159252876246683
LSCLKTLVR	9	Unmodified	_LSCLKTLVR_					0	0	0		ENST00000465761.1_1_20:43561720-43565607:+|nuORF	ENST00000465761.1_1_20:43561720-43565607:+|nuORF	ENST00000465761.1_1_20:43561720-43565607:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.8009643554688	2	516.815344	1031.61614	0.1112	5.7471E-05	0.11844	6.1212E-05	0.22964	0.00011868	516.8159044921902	29.014	1.5373	29.027	28.699	30.236	0.013474					182	53	5	0	0	0	0.22215	1	5490	5490		20.415	1.1575	1	18158000			26686	10803	15195	15196	33322	33322					0.10159252876246683
LSCLRVGRR	9	Unmodified	_LSCLRVGRR_					0	0	0			REV__ENST00000495880.1_1_3:52083316-52083664:-|nuORF	REV__ENST00000495880.1_1_3:52083316-52083664:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3247680664062	2	530.313835	1058.61312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.186	1	19.186	18.686	19.686	0								0	0	0	0.25631	1	2158	2158		4.3292	0.38484	1		+		26687	21664	15196	15197	33323	33323					0.08615422542106899
LSCPVFLV	8	Unmodified	_LSCPVFLV_					0	0	0		ENST00000352483.3_1_21:43160887-43160989:-|nuORF	ENST00000352483.3_1_21:43160887-43160989:-|nuORF	ENST00000352483.3_1_21:43160887-43160989:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.2531433105469	2	439.246232	876.477911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.669	1	16.555	16.055	17.055	-0.11434								0	0	0	0.36169	1	1399	1399		9.3474	0	1				26688	9582	15197	15198	33324	33324					0.03473129627764138
LSCRPILPLTR	11	Unmodified	_LSCRPILPLTR_					0	0	0		ENST00000604157.1_1_4:153457505-153457595:+|nuORF	ENST00000604157.1_1_4:153457505-153457595:+|nuORF	ENST00000604157.1_1_4:153457505-153457595:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.37744140625	2	634.879007	1267.74346	0.24397	0.00015489	-0.72435	-0.00045988	-0.48038	-0.00030498	634.8785029248442	103.55	1.1458	103.55	103.49	104.63	0.0082703					232	160	2	0	0	0	0.33218	1	27588	27588		4.1895	2.86	1	22339000			26689	12278	15198	15199	33325	33325					0.12029973750418321
LSCSEDMSI	9	Unmodified	_LSCSEDMSI_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8194580078125	2	492.704268	983.393983	0.35607	0.00017544	0.28889	0.00014234	0.64496	0.00031777	492.7040454899451	30.629	0.42779	30.657	30.496	30.924	0.027946					18	14	2	0	0	0	0.2451	1	5673	5673		15.847	0	1	59441			26690	3906	15199	15200	33326	33326					-0.09837814322099803
LSCSRKPVA	9	Unmodified	_LSCSRKPVA_					0	0	0		ENST00000456775.1_1_7:116593398-116593683:-|nuORF	ENST00000456775.1_1_7:116593398-116593683:-|nuORF	ENST00000456775.1_1_7:116593398-116593683:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2145080566406	2	480.768394	959.522236	0.086832	4.1746E-05	-2.5477	-0.0012249	-2.4609	-0.0011831	480.76697112659815	27.369	0.14797	27.358	27.29	27.438	-0.01156					5	4	2	0	0	0	0.25527	1	4628	4628		8.7454	1.4562	1	33930			26691	10698	15200	15201	33327	33327					0.04085533773957195
LSCSYLQL	8	Unmodified	_LSCSYLQL_					0	0	0			REV__WDR75|p.K411Mfs*20|1|0.05|ENSG00000115368|chr2:189465196-189465197|-/TGATAATTAACTACATCCAAGACAACTTCTGT|frameshift_variant	REV__WDR75|p.K411Mfs*20|1|0.05|ENSG00000115368|chr2:189465196-189465197|-/TGATAATTAACTACATCCAAGACAACTTCTGT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.73681640625	2	463.736228	925.457904	-0.42482	-0.00019701	1.9357	0.00089766	1.5109	0.00070066	463.73704385471865	60.117	0.56941	60.117	59.844	60.413	0					34	20	2	0	0	0	0.30517	1	14717	14717		30.225	5.5509	1	671520	+		26692	23356	15201	15202	33328	33328					-0.007806661028325834
LSCSYLQL	8	Unmodified	_LSCSYLQL_					0	0	0			REV__WDR75|p.K411Mfs*20|1|0.05|ENSG00000115368|chr2:189465196-189465197|-/TGATAATTAACTACATCCAAGACAACTTCTGT|frameshift_variant	REV__WDR75|p.K411Mfs*20|1|0.05|ENSG00000115368|chr2:189465196-189465197|-/TGATAATTAACTACATCCAAGACAACTTCTGT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.2844543457031	2	463.736228	925.457904	0.0089222	4.1375E-06	1.745	0.00080922	1.7539	0.00081336	463.73704980018596	60.023	0.59037	60.012	59.813	60.404	-0.011486					34	20	2	0	0	0	0.27344	1	14744	14744		42.095	15.211	1	983300	+		26693	23356	15201	15202	33329	33329					-0.007806661028325834
LSCSYLQL	8	Unmodified	_LSCSYLQL_					0	0	0			REV__WDR75|p.K411Mfs*20|1|0.05|ENSG00000115368|chr2:189465196-189465197|-/TGATAATTAACTACATCCAAGACAACTTCTGT|frameshift_variant	REV__WDR75|p.K411Mfs*20|1|0.05|ENSG00000115368|chr2:189465196-189465197|-/TGATAATTAACTACATCCAAGACAACTTCTGT|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	463.736228	925.457904	-0.64649	-0.0002998	2.2811	0.0010578	1.6346	0.00075804	463.7373035106805	60.006	0.59698	60.102	59.798	60.395	0.095093	0.024844	0.00024613	NaN	42.095	38	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	571470	+		26694	23356	15201	15202							-0.007806661028325834
LSCYPWFHGPI	11	Unmodified	_LSCYPWFHGPI_					0	0	0		ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.6239013671875	3	440.546231	1318.61686	0.044697	1.9691E-05	-0.34269	-0.00015097	-0.29799	-0.00013128	440.54610467802775	26.782	1.043	26.76	26.45	27.493	-0.021412					87	36	3	0	0	0	0.33122	1	4673	4673		7.0371	1.2537	1	2294900			26695	2356	15202	15203	33330	33330					-0.029699524747002215
LSCYPWFHGPI	11	Unmodified	_LSCYPWFHGPI_					0	0	0		ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.5460510253906	3	440.546231	1318.61686	0.21143	9.3143E-05	-0.44382	-0.00019552	-0.23239	-0.00010238	440.5460307423103	26.896	1.1569	26.884	26.595	27.752	-0.011562					95	40	3	0	0	0	0.43198	2	4600	4600;4651		7.0371	1.9896	1	2000100			26696	2356	15202	15203	33331;33332	33331					-0.029699524747002215
LSDALDEDYF	10	Unmodified	_LSDALDEDYF_					0	0	0			REV__ENSG00000139160|ENST00000357721|ETFBKMT	REV__ENSG00000139160|ENST00000357721|ETFBKMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7800903320312	2	594.258776	1186.503	0.28048	0.00016668	0.81289	0.00048306	1.0934	0.00064974	594.2592475678613	62.004	0.23559	61.995	61.931	62.167	-0.0085564					12	8	2	0	0	0	0.31267	1	15261	15261		14.838	0.93222	1	102310	+		26697	15968	15203	15204	33333	33333					-0.08279188826622885
LSDALSIIK	9	Unmodified	_LSDALSIIK_					0	0	0			REV__ENSG00000184677|ENST00000375647|ZBTB40	REV__ENSG00000184677|ENST00000375647|ZBTB40	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.753173828125	2	480.292225	958.569897	0.20065	9.637E-05	0.099441	4.7761E-05	0.30009	0.00014413	480.29213729264006	59.32	0.47363	59.411	59.183	59.657	0.091301					33	16	3	0	0	0	0.2322	1	14397	14397		20.454	0	1	435760	+		26698	18329	15204	15205	33334	33334					0.08895511245827947
LSDARCVFD	9	Unmodified	_LSDARCVFD_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.8112182617188	2	513.239667	1024.46478	0.38585	0.00019803	-1.4871	-0.00076326	-1.1013	-0.00056523	513.7428222210723	26.767	0.20015	26.756	26.651	26.851	-0.01156					9	6	2	0	0	0	0.25323	1	4456	4456		10.074	0	1	38427			26699	5158	15205	15206	33335	33335					-0.04647353222264883
LSDDHVLIL	9	Unmodified	_LSDDHVLIL_					0	0	0		nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7869873046875	2	512.787307	1023.56006	0.60343	0.00030943	-0.021442	-1.0995E-05	0.58199	0.00029844	512.786862111044	58.347	0.46918	58.333	58.114	58.583	-0.014267					34	16	3	0	0	0	0.15219	1	14146	14146		30.637	2.1497	1	387150			26700	1451	15206	15207	33336	33336					0.049223232404415285
LSDDHVLIL	9	Unmodified	_LSDDHVLIL_					0	0	0		nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	512.787307	1023.56006	0.42417	0.00021751	-0.34329	-0.00017603	0.080884	4.1477E-05	512.7870161915132	58.401	0.54945	58.401	58.075	58.624	0	0.057597	-0.00025776	NaN	30.637	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	426090			26701	1451	15206	15207							0.049223232404415285
LSDDHVLIL	9	Unmodified	_LSDDHVLIL_					0	0	0		nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	512.787307	1023.56006	0.29147	0.00014946	0.57765	0.00029621	0.86913	0.00044568	512.7871621077903	58.21	0.63605	58.295	57.945	58.581	0.085621	-0.047682	0.00068673	NaN	30.637	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327110			26702	1451	15206	15207							0.049223232404415285
LSDEKLIQKI	10	Unmodified	_LSDEKLIQKI_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;ENST00000524657.1_1_11:67020024-67022523:+|nuORF;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8604736328125	2	593.855721	1185.69689	0.48042	0.0002853	0.40573	0.00024095	0.88616	0.00052625	593.8560461262628	49	1.3553	49.045	48.47	49.825	0.044891					115	49	4	0	0	0	0.31867	1	11165	11165		18.146	4.2403	1	4661500			26703	6693	15207	15208	33337	33337					0.11146812400124873
LSDFRLPEEK	10	Unmodified	_LSDFRLPEEK_					0	0	0		nc|ENSG00000071909|Q8WXR4-7|MYO3B;nc|ENSG00000071909|Q8WXR4-6|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;nc|ENSG00000071909|Q8WXR4-5|MYO3B;nc|ENSG00000071909|Q8WXR4-2|MYO3B;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;ENSG00000071909|ENST00000408978|MYO3B;ENST00000602629.1_1_2:171225816-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-3|MYO3B;nc|ENSG00000071909|Q8WXR4-4|MYO3B	nc|ENSG00000071909|Q8WXR4-7|MYO3B	nc|ENSG00000071909|Q8WXR4-7|MYO3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2348937988281	3	411.88731	1232.6401	0.21357	8.7967E-05	-0.60857	-0.00025066	-0.395	-0.0001627	411.8870399654302	38.412	0.46719	38.509	38.266	38.733	0.097527					31	16	3	0	0	0	0.31597	1	7955	7955		5.4027	0	1	214460			26704	12584	15208	15209	33338	33338					0.03308764843609424
LSDGGSNLF	9	Unmodified	_LSDGGSNLF_					0	0	0			REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF	REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.76568603515625	2	455.219257	908.423961	-0.17455	-7.9461E-05	3.4551	0.0015728	3.2806	0.0014934	455.22037006036396	65.102	0.48963	65.102	64.884	65.373	0					28	17	2	0	0	0	0.24311	1	16266	16266		11.64	0	1	200530	+		26705	16785	15209	15210	33339	33339					-0.033913712702315024
LSDGNSTEFE	10	Unmodified	_LSDGNSTEFE_					0	0	0			REV__nc|ENSG00000165671|Q96L73-2|NSD1	REV__nc|ENSG00000165671|Q96L73-2|NSD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7477416992188	2	549.732926	1097.4513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.271	1	37.364	36.864	37.864	0.093018								0	0	0	0.33119	1	7650	7650		22.736	4.5899	1		+		26706	17252	15210	15211	33340	33340					-0.09352932520528157
LSDHLSDLQGR	11	Unmodified	_LSDHLSDLQGR_					0	0	0		nc|ENSG00000085185|Q5H9F3-1|BCORL1;ENSG00000085185|ENST00000540052|BCORL1;nc|ENSG00000085185|Q5H9F3-4|BCORL1	nc|ENSG00000085185|Q5H9F3-1|BCORL1	nc|ENSG00000085185|Q5H9F3-1|BCORL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.817138671875	2	620.817658	1239.62076	0.25928	0.00016096	-0.15294	-9.4949E-05	0.10633	6.6014E-05	620.8176002581661	17.168	1.1818	17.168	16.895	18.077	0					132	40	5	0	0	0	0.47633	1	1740	1740		1.1933	0.84271	1	4116300			26707	1253	15211	15212	33341	33341					0.010538085527059593
LSDIFSLIN	9	Unmodified	_LSDIFSLIN_					0	0	0		nc|ENSG00000163867|O95789-5|ZMYM6;ENST00000493328.5_1_1:35452707-35454621:-|nuORF;ENSG00000163867|ENST00000357182|ZMYM6	nc|ENSG00000163867|O95789-5|ZMYM6	nc|ENSG00000163867|O95789-5|ZMYM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.26934814453125	2	511.281857	1020.54916	0.45406	0.00023215	2.2159	0.0011329	2.6699	0.0013651	511.2830548427735	45.138	0.36317	45.206	45.093	45.456	0.068569					20	12	2	0	0	0	0.13748	1	10098	10098		32.786	0.4802	1	157850			26708	5745	15212	15213	33342	33342					0.03970920866140659
LSDIGEGMDYI	11	Unmodified	_LSDIGEGMDYI_					0	0	0		ENSG00000091106|ENST00000402280|NLRC4;nc|ENSG00000091106|Q9NPP4-2|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.5526123046875	3	404.853278	1211.538	-0.27324	-0.00011062	0.3011	0.0001219	0.027862	1.128E-05	404.85344079938847	22.52	0.77388	22.52	22.303	23.077	0					39	26	2	0	0	0	0.329	1	3210	3210		2.6312	1.039	1	134350			26709	1395	15213	15214	33343	33343					-0.05930269290274737
LSDISLCSL	9	Unmodified	_LSDISLCSL_					0	0	0			REV__ENST00000592267.1_1_17:43342005-43351146:-|nuORF	REV__ENST00000592267.1_1_17:43342005-43351146:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.31341552734375	2	475.746793	949.479033	0.52308	0.00024885	-3.6413	-0.0017323	-3.1182	-0.0014835	475.74474833626584	56.357	0.37094	56.357	56.212	56.582	0					23	13	2	0	0	0	0.12743	1	13509	13509		46.021	3.9264	1	320920	+		26710	13351	15214	15215	33344	33344					0.002272992060170509
LSDISLCSL	9	Unmodified	_LSDISLCSL_					0	0	0			REV__ENST00000592267.1_1_17:43342005-43351146:-|nuORF	REV__ENST00000592267.1_1_17:43342005-43351146:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	475.746793	949.479033	0.92727	0.00044115	-4.0493	-0.0019264	-3.122	-0.0014853	475.7447773122281	56.405	0.29285	56.386	56.326	56.619	-0.019077	0.01422	-0.00019042	NaN	30.637	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535530	+		26711	13351	15214	15215							0.002272992060170509
LSDKNVSNLPV	11	Unmodified	_LSDKNVSNLPV_					0	0	0		ENST00000430953.1_1_20:14738267-14738540:+|nuORF	ENST00000430953.1_1_20:14738267-14738540:+|nuORF	ENST00000430953.1_1_20:14738267-14738540:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.7171630859375	2	593.327328	1184.6401	0.2595	0.00015397	1.6515	0.00097988	1.911	0.0011339	593.3286666137916	97.819	0.25612	97.881	97.675	97.931	0.061523					38	29	2	0	0	0	0.32996	1	26168	26168		4.897	0	1	154600			26712	10471	15215	15216	33345	33345					0.05516764843605415
LSDKNVSNLPV	11	Unmodified	_LSDKNVSNLPV_					0	0	0		ENST00000430953.1_1_20:14738267-14738540:+|nuORF	ENST00000430953.1_1_20:14738267-14738540:+|nuORF	ENST00000430953.1_1_20:14738267-14738540:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	593.327328	1184.6401	0.39154	0.00023231	0.61383	0.0003642	1.0054	0.00059651	593.3277687092099	97.701	0.3074	97.694	97.553	97.86	-0.0068283	-0.093469	-0.00048677	NaN	4.897	41	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107860			26713	10471	15215	15216							0.05516764843605415
LSDKRSPARDH	11	Unmodified	_LSDKRSPARDH_					0	0	0			REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2378234863281	3	427.893459	1280.65855	-0.10291	-4.4037E-05	0.3343	0.00014304	0.23138	9.9008E-05	427.89347056170516	21.758	1.0827	21.709	21.179	22.262	-0.049377					75	38	3	0	0	0	0.33207	1	3059	3059		5.5233	0.80737	1	144600	+		26714	14571	15216	15217	33346	33346					0.029443195381645637
LSDKRSPARDH	11	Unmodified	_LSDKRSPARDH_					0	0	0			REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	427.893459	1280.65855	-0.08225	-3.5194E-05	0.1848	7.9076E-05	0.10255	4.3881E-05	427.89330648103953	21.811	0.87589	21.811	21.169	22.045	0	0.060743	0.00013841	NaN	5.5233	68	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98141	+		26715	14571	15216	15217							0.029443195381645637
LSDKRSPARDH	11	Unmodified	_LSDKRSPARDH_					0	0	0			REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	427.893459	1280.65855	-0.0060525	-2.5898E-06	-0.16556	-7.0842E-05	-0.17161	-7.3432E-05	427.89339332438686	21.831	1.0014	21.731	21.043	22.045	-0.10034	-0.019482	-0.00031134	NaN	5.5233	63	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155280	+		26716	14571	15216	15217							0.029443195381645637
LSDLGLKQH	9	Unmodified	_LSDLGLKQH_					0	0	0		ENST00000560341.2_1_15:40348684-40349006:+|nuORF	ENST00000560341.2_1_15:40348684-40349006:+|nuORF	ENST00000560341.2_1_15:40348684-40349006:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2554016113281	2	505.785099	1009.55564	0.44262	0.00022387	-1.3716	-0.00069375	-0.92901	-0.00046988	505.7842775822641	21.109	0.39987	21.057	20.861	21.261	-0.052912					18	13	2	0	0	0	0.26031	1	2737	2737		3.5965	0.31518	1	31028			26717	11895	15217	15218	33347	33347					0.05124858817521272
LSDLIEKNL	9	Unmodified	_LSDLIEKNL_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2669677734375	2	522.800414	1043.58628	0.33298	0.00017408	1.4066	0.00073535	1.7395	0.00090943	522.8015061979374	19.284	0.60983	19.228	18.961	19.571	-0.055693					35	20	2	0	0	0	0.25202	1	2151	2151		10.824	0	1	88955			26718	2574	15218	15219	33348	33348					0.06622592411895312
LSDLRDVDI	9	Unmodified	_LSDLRDVDI_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2796630859375	2	523.279846	1044.54514	0.29193	0.00015276	-0.49611	-0.0002596	-0.20418	-0.00010684	523.2796821567484	28.853	0.46551	28.853	28.661	29.127	0.00046921					28	16	2	0	0	0	0.20626	1	5071	5071		22.736	4.3632	1	171370			26719	8416	15219	15220	33349	33349					0.02464831372435583
LSDPSDISF	9	Unmodified	_LSDPSDISF_					0	0	0			REV__ENSG00000155366|ENST00000339083|RHOC	REV__ENSG00000155366|ENST00000339083|RHOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7326354980469	2	490.732197	979.449842	0.46284	0.00022713	0.98	0.00048092	1.4428	0.00070805	490.73242010283616	66.26	0.71411	66.344	65.996	66.71	0.083832					65	25	3	0	0	0	0.1669	1	16547	16547		28.487	1.6032	1	558600	+		26720	13692	15220	15221	33350	33350					-0.04070521818607631
LSDRGFRLT	9	Unmodified	_LSDRGFRLT_					0	0	0		ENST00000366898.5_1_6:162864385-162864457:-|nuORF	ENST00000366898.5_1_6:162864385-162864457:-|nuORF	ENST00000366898.5_1_6:162864385-162864457:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7960815429688	2	532.795998	1063.57744	0.3384	0.0001803	0.066957	3.5674E-05	0.40536	0.00021597	532.7959642960549	28.933	0.79439	28.928	28.658	29.453	-0.0042572					68	27	4	0	0	0	0.22935	1	5089	5089		19.362	2.249	1	860110			26721	9716	15221	15222	33351	33351					0.048196635660815446
LSDRGFRLT	9	Unmodified	_LSDRGFRLT_					0	0	0		ENST00000366898.5_1_6:162864385-162864457:-|nuORF	ENST00000366898.5_1_6:162864385-162864457:-|nuORF	ENST00000366898.5_1_6:162864385-162864457:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.796142578125	2	532.795998	1063.57744	0.32375	0.00017249	0.30238	0.00016111	0.62613	0.0003336	532.796038640626	28.963	0.71043	28.976	28.619	29.329	0.013475					63	25	3	0	0	0	0.23612	1	5168	5168		18.373	6.8784	1	799710			26722	9716	15221	15222	33352	33352					0.048196635660815446
LSDRRVLL	8	Unmodified	_LSDRRVLL_					0	0	0		ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5	ENSG00000182544|ENST00000329548|MFSD5	ENSG00000182544|ENST00000329548|MFSD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.3053283691406	2	486.303458	970.592364	0.32604	0.00015855	1.9486	0.00094761	2.2746	0.0011062	486.3039081804789	66.138	3.5412	66.124	64.687	68.228	-0.013588					203	127	4	0	0	0	0.33441	1	16476	16476		26.884	0	1	4908000			26723	7298	15222	15223	33353	33353					0.10589155434104214
LSDSRFVLV	9	Unmodified	_LSDSRFVLV_					0	0	0			REV__ENST00000489200.5_1_X:153626749-153627742:+|nuORF	REV__ENST00000489200.5_1_X:153626749-153627742:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8069458007812	2	518.295299	1034.57605	0.27867	0.00014443	-0.14089	-7.3023E-05	0.13778	7.1408E-05	518.2953553939311	38.204	0.47351	38.302	38.122	38.596	0.097527					34	16	3	0	0	0	0.25526	1	7889	7889		7.9102	0.62092	1	243070	+		26724	21586	15223	15224	33354	33354					0.060140294773418645
LSDTHLDIS	9	Unmodified	_LSDTHLDIS_					0	0	0			REV__MEN1|p.Y358Sfs*15|1|0.35|ENSG00000133895|chr11:64805762-64805762|T/-|frameshift_variant	REV__MEN1|p.Y358Sfs*15|1|0.35|ENSG00000133895|chr11:64805762-64805762|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2828063964844	2	500.750921	999.48729	0.075703	3.7908E-05	0.62086	0.00031089	0.69656	0.0003488	500.7513581098111	25.764	0.51857	25.725	25.412	25.931	-0.038671					25	17	2	0	0	0	0.24688	1	4107	4107		14.838	3.198	1	99064	+		26725	15642	15224	15225	33355	33355					-0.01247430552973583
LSDVPLERLL	10	Unmodified	_LSDVPLERLL_					0	0	0			REV__ENST00000497639.5_1_10:69644980-69647288:+|nuORF	REV__ENST00000497639.5_1_10:69644980-69647288:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.2955322265625	2	577.842613	1153.67067	0.57073	0.00032979	0.78011	0.00045078	1.3508	0.00078057	577.843117038425	47.058	0.47563	47.058	46.904	47.38	0					27	16	3	0	0	0	0.31358	1	10752	10752		5.7319	1.4026	1	423420	+		26726	21687	15225	15226	33356	33356					0.09998543228675771
LSDWMEGE	8	Unmodified	_LSDWMEGE_					0	0	0		ENST00000244763.8_1_6:7288903-7288999:-|nuORF	ENST00000244763.8_1_6:7288903-7288999:-|nuORF	ENST00000244763.8_1_6:7288903-7288999:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7603759765625	2	483.6973	965.380048	0.32528	0.00015734	0.44678	0.00021611	0.77206	0.00037344	483.6974454627345	73.317	0.59539	73.287	73.042	73.637	-0.029305					39	21	3	0	0	0	0.34247	1	18819	18819		8.5933	2.8329	1	229340			26727	8896	15226	15227	33357	33357					-0.10402723758863885
LSDYGYHLR	9	Unmodified	_LSDYGYHLR_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.7647705078125	2	562.28018	1122.54581	0.085757	4.822E-05	3.2222	0.0018118	3.3079	0.00186	562.2818660791833	22.659	0.17491	22.659	22.533	22.708	0					6	5	2	0	0	0	0.25622	1	3184	3184		7.2892	0	1	26927			26728	628	15227	15228	33358	33358					-0.010563291878725067
LSDYNIQKV	9	Unmodified	_LSDYNIQKV_					0	0	0		ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7420043945312	2	540.290214	1078.56587	0.44896	0.00024257	3.8402	0.0020748	4.2891	0.0023174	540.7947680305006	59.036	0.72564	59.036	58.654	59.38	0					37	25	2	0	0	0	0.22596	1	14449	14449		15.847	0	1	438880			26729	11224	15228	15229	33359	33359					0.029734217520854145
LSDYNIQKV	9	Unmodified	_LSDYNIQKV_					0	0	0		ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	540.290214	1078.56587	0.50739	0.00027414	3.217	0.0017381	3.7244	0.0020123	540.7945516327443	58.905	0.49888	58.996	58.74	59.238	0.091301	-0.017425	-0.00037168	NaN	15.847	33	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476930			26730	11224	15228	15229							0.029734217520854145
LSDYNIQKV	9	Unmodified	_LSDYNIQKV_					0	0	0		ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	540.290214	1078.56587	0.6331	0.00034206	3.7196	0.0020097	4.3527	0.0023517	540.7947795349708	59.023	0.5029	59.009	58.806	59.309	-0.014267	-0.0046044	0.00017144	NaN	15.847	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	500080			26731	11224	15228	15229							0.029734217520854145
LSEEEIAMAVT	11	Unmodified	_LSEEEIAMAVT_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.2792358398438	2	596.791929	1191.5693	0.69026	0.00041194	2.5586	0.0015269	3.2488	0.0019389	596.7935469239987	47.717	0.69851	47.765	47.137	47.836	0.04752					31	25	2	0	0	0	0.3239	1	10701	10701		17.113	2.2746	1	384970			26732	6138	15229	15230	33360	33360					-0.01881696256214127
LSEEEIAMAVT	11	Unmodified	_LSEEEIAMAVT_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	596.791929	1191.5693	0.69563	0.00041514	2.4153	0.0014414	3.1109	0.0018566	596.793371622338	47.72	0.39382	47.763	47.43	47.824	0.04332	-0.0077482	-6.2149E-05	NaN	12.241	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	460190			26733	6138	15229	15230							-0.01881696256214127
LSEELTKYK	9	Unmodified	_LSEELTKYK_					0	0	0		nc|ENSG00000106100|Q9Y239-3|NOD1;ENSG00000106100|ENST00000222823|NOD1	nc|ENSG00000106100|Q9Y239-3|NOD1	nc|ENSG00000106100|Q9Y239-3|NOD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3385009765625	2	555.805697	1109.59684	-0.18919	-0.00010515	2.7474	0.001527	2.5582	0.0014219	555.8065935731033	12.45	0.17778	12.382	12.313	12.491	-0.06806					7	5	2	0	0	0	0.26168	1	154	154		1.8442	0.19162	1	7646.7			26734	2057	15230	15231	33361	33361					0.04642575066304744
LSEFCGCCF	9	Unmodified	_LSEFCGCCF_					0	0	0			REV__ENSG00000139174|ENST00000345127|PRICKLE1	REV__ENSG00000139174|ENST00000345127|PRICKLE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.27655029296875	2	504.684824	1007.3551	0.25035	0.00012635	1.172	0.0005915	1.4224	0.00071785	504.68525052380915	73.077	0.46758	73.131	72.814	73.281	0.053833					23	16	2	0	0	0	0.25938	1	18674	18674		4.3292	1.44	1	96860	+		26735	15970	15231	15232	33362	33362					-0.14828818157457135
LSEFCGCCF	9	Unmodified	_LSEFCGCCF_					0	0	0			REV__ENSG00000139174|ENST00000345127|PRICKLE1	REV__ENSG00000139174|ENST00000345127|PRICKLE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	504.684824	1007.3551	0.3493	0.00017629	0.97705	0.0004931	1.3263	0.00066939	504.6852974762454	73.122	0.3997	73.122	72.881	73.281	0	0.012051	2.8011E-05	NaN	4.3292	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86126	+		26736	15970	15231	15232							-0.14828818157457135
LSEFEFDVII	10	Unmodified	_LSEFEFDVII_					0	0	0		nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-3|MICAL2	nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.514892578125	3	404.544662	1210.61216	-0.1531	-6.1937E-05	0.93583	0.00037858	0.78272	0.00031665	404.5451514924574	16.49	0.57932	16.428	16.094	16.674	-0.062532					41	19	4	0	0	0	0.31942	1	1302	1302		6.1918	2.6048	1	83208			26737	12703	15232	15233	33363	33363					0.015274418635272013
LSEFFDIFE	9	Unmodified	_LSEFFDIFE_					0	0	0		ENSG00000085788|ENST00000397166|DDHD2;nc|ENSG00000085788|O94830-2|DDHD2	ENSG00000085788|ENST00000397166|DDHD2	ENSG00000085788|ENST00000397166|DDHD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.7993774414062	2	573.771322	1145.52809	-0.007619	-4.3715E-06	-0.76233	-0.0004374	-0.76995	-0.00044178	573.7713559321812	65.258	0.47117	65.258	65.017	65.488	0					45	16	3	0	0	0	0.19839	1	16203	16203		28.487	6.7402	1	406290			26738	1264	15233	15234	33364	33364					-0.038850892333812226
LSEFFDIFE	9	Unmodified	_LSEFFDIFE_					0	0	0		ENSG00000085788|ENST00000397166|DDHD2;nc|ENSG00000085788|O94830-2|DDHD2	ENSG00000085788|ENST00000397166|DDHD2	ENSG00000085788|ENST00000397166|DDHD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.7994384765625	2	573.771322	1145.52809	-0.010883	-6.2441E-06	-0.35494	-0.00020366	-0.36583	-0.0002099	573.7716482755675	65.138	0.58585	65.227	64.905	65.491	0.088882					48	21	3	0	0	0	0.22596	1	16173	16173		21.747	0	1	407530			26739	1264	15233	15234	33365	33365					-0.038850892333812226
LSEFFDIFE	9	Unmodified	_LSEFFDIFE_					0	0	0		ENSG00000085788|ENST00000397166|DDHD2;nc|ENSG00000085788|O94830-2|DDHD2	ENSG00000085788|ENST00000397166|DDHD2	ENSG00000085788|ENST00000397166|DDHD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.79931640625	2	573.771322	1145.52809	-0.018568	-1.0654E-05	-0.20028	-0.00011491	-0.21884	-0.00012557	573.771536318645	65.255	0.55563	65.244	64.922	65.478	-0.011337					31	20	2	0	0	0	0.19839	1	16194	16194		28.487	8.0723	1	406850			26740	1264	15233	15234	33366	33366					-0.038850892333812226
LSEGEDCRIRL	11	Unmodified	_LSEGEDCRIRL_					0	0	0			REV__ENST00000600067.1_1_19:51857545-51871263:-|nuORF	REV__ENST00000600067.1_1_19:51857545-51871263:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8880920410156	3	430.887205	1289.63978	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.94	1	38.94	38.44	39.44	0								0	0	0	0.36137	1	8167	8167		2.6312	0.19645	1		+		26741	16896	15234	15235	33367	33367					0.006550218520942508
LSEIVSAIKL	10	Unmodified	_LSEIVSAIKL_					0	0	0			REV__ENSG00000204851|ENST00000599531|PNMA8B	REV__ENSG00000204851|ENST00000599531|PNMA8B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2689819335938	2	536.834257	1071.65396	0.43498	0.00023351	0.91773	0.00049267	1.3527	0.00072618	536.8348081559486	51.645	0.51201	51.655	51.48	51.992	0.0095634					28	18	2	0	0	0	0.31039	1	12021	12021		8.7454	2.5396	1	341760	+		26742	18967	15235	15236	33368	33368					0.12100042342694906
LSEKEHRMKRK	11	Unmodified	_LSEKEHRMKRK_					0	0	0			REV__nc|ENSG00000248905|Q68DA7-5|FMN1	REV__nc|ENSG00000248905|Q68DA7-5|FMN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2728271484375	3	481.273393	1440.79835	0.30584	0.00014719	-0.3222	-0.00015507	-0.016361	-7.8742E-06	481.27312017438777	35.979	0.75321	35.979	35.604	36.358	0					48	27	3	0	0	0	0.45422	2	7209	7192;7209		4.1166	1.6818	1	661870	+		26743	23215	15236	15237	33369;33370	33370					0.09558360551000078
LSEKEHRMKRK	11	Unmodified	_LSEKEHRMKRK_					0	0	0			REV__nc|ENSG00000248905|Q68DA7-5|FMN1	REV__nc|ENSG00000248905|Q68DA7-5|FMN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	481.273393	1440.79835	0.30584	0.00014719	-0.3222	-0.00015507	-0.016361	-7.8742E-06	481.27312017438777	35.979	0.75321	35.979	35.604	36.358	0	0.077087	4.579E-05	NaN	4.1166	48	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	661870	+		26744	23215	15236	15237							0.09558360551000078
LSEKEHRMKRK	11	Unmodified	_LSEKEHRMKRK_					0	0	0			REV__nc|ENSG00000248905|Q68DA7-5|FMN1	REV__nc|ENSG00000248905|Q68DA7-5|FMN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	481.273393	1440.79835	0.36074	0.00017362	-0.41244	-0.0001985	-0.051697	-2.488E-05	481.27317612941965	35.794	0.74404	35.877	35.54	36.284	0.082359	-0.024776	-8.45E-05	NaN	4.1166	45	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	630360	+		26745	23215	15236	15237							0.09558360551000078
LSEKEHRMKRK	11	Unmodified	_LSEKEHRMKRK_					0	0	0			REV__nc|ENSG00000248905|Q68DA7-5|FMN1	REV__nc|ENSG00000248905|Q68DA7-5|FMN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	481.273393	1440.79835	0.3795	0.00018264	-0.29706	-0.00014297	0.082441	3.9677E-05	481.27319220243265	35.763	0.70751	35.849	35.537	36.244	0.086246	-0.052311	8.209E-05	NaN	4.1166	45	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	700660	+		26746	23215	15236	15237							0.09558360551000078
LSELQNPLL	9	Unmodified	_LSELQNPLL_					0	0	0		ENSG00000183379|ENST00000331628|SYNDIG1L	ENSG00000183379|ENST00000331628|SYNDIG1L	ENSG00000183379|ENST00000331628|SYNDIG1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.298828125	2	513.795132	1025.57571	0.13901	7.1425E-05	1.5974	0.00082075	1.7364	0.00089217	514.2978153056481	19.364	0.8884	19.308	18.989	19.877	-0.055693					103	30	5	0	0	0	0.26612	2	2219	2219;2272		13.906	0	1	393830			26747	7365	15237	15238	33371;33372	33371					0.06394609757489889
LSELRTVEQEL	11	Unmodified	_LSELRTVEQEL_					0	0	0			REV__ENSG00000039523|ENST00000042381|RIPOR1	REV__ENSG00000039523|ENST00000042381|RIPOR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.5736389160156	3	439.573392	1315.69835	0.37759	0.00016598	0.39825	0.00017506	0.77585	0.00034104	439.57364651181325	32.241	1.6316	32.297	32.007	33.639	0.055309					165	58	5	0	0	0	0.39698	1	6248	6248		11.631	1.3161	1	2553000	+		26748	13522	15238	15239	33373	33373					0.05312401698256508
LSELSLWKVVH	11	Unmodified	_LSELSLWKVVH_					0	0	0			REV__ENST00000430374.5_1_2:217279626-217279842:+|nuORF	REV__ENST00000430374.5_1_2:217279626-217279842:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2232360839844	3	437.587084	1309.73942	-0.15049	-6.5851E-05	-4.2931	-0.0018786	-4.4436	-0.0019444	437.5851208193117	18.172	0.31919	18.054	17.896	18.215	-0.11739					16	10	2	0	0	0	0.33303	1	1880	1880		2.4348	0.52841	1	36095	+		26749	20944	15239	15240	33374	33374					0.09694207528355037
LSEMEEKLT	9	Unmodified	_LSEMEEKLT_					0	0	0			REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2981567382812	2	540.26809	1078.52163	0.71213	0.00038474	-1.6178	-0.00087402	-0.90563	-0.00048928	540.2663946578765	32.508	0.30487	32.563	32.37	32.675	0.055309					14	10	2	0	0	0	0.25526	1	6175	6175		7.9102	0.62092	1	115580	+		26750	16147	15240	15241	33375	33375					-0.014493504564143223
LSENQDKARTS	11	Unmodified	_LSENQDKARTS_					0	0	0			REV__ENST00000557255.1_1_14:53325097-53325283:-|nuORF	REV__ENST00000557255.1_1_14:53325097-53325283:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.8126831054688	2	624.812573	1247.61059	0.064166	4.0092E-05	0.92543	0.00057822	0.9896	0.00061831	624.8131584519547	74.861	1.448	74.914	74.519	75.967	0.052361					59	27	3	0	0	0	0.40332	1	19199	19199		10.8	0.72558	1	742120	+		26751	13779	15241	15242	33376	33376					-0.003307991725478132
LSEPAPLTL	9	Unmodified	_LSEPAPLTL_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000204352|Q5T035|FAM120A2P	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.77105712890625	2	470.771126	939.527698	0.03509	1.6519E-05	-0.39023	-0.00018371	-0.35514	-0.00016719	470.7710285911332	69.792	0.67329	69.858	69.487	70.16	0.066048					61	23	4	0	0	0	0.21303	1	17685	17685		21.747	0	1	393370			26752	12572	15242	15243	33377	33377					0.05551535837423671
LSERPFPVL	9	Unmodified	_LSERPFPVL_					0	0	0			REV__ENST00000308448.11_1_10:89577578-89577689:-|nuORF	REV__ENST00000308448.11_1_10:89577578-89577689:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.7505493164062	2	529.305667	1056.59678	0.35985	0.00019047	-0.29293	-0.00015505	0.066921	3.5422E-05	529.8069001817215	55.418	0.15783	55.418	55.35	55.507	0					6	5	2	0	0	0	0.24471	1	13235	13235		12.241	0	1	164060	+		26753	19879	15243	15244	33378	33378					0.0707461985698501
LSERQVEISVI	11	Unmodified	_LSERQVEISVI_					0	0	0			REV__ENSG00000183011|ENST00000575771|NAA38	REV__ENSG00000183011|ENST00000575771|NAA38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.9139404296875	3	424.910115	1271.70852	0.0084878	3.6066E-06	1.4026	0.00059597	1.4111	0.00059957	424.9112902477372	32.766	3.2112	32.766	32.171	35.382	0					358	115	6	0	0	0	0.38248	1	6186	6186		13.535	0.67899	1	41338000	+		26754	18231	15244	15245	33379	33379					0.08353009423467483
LSERQVEISVI	11	Unmodified	_LSERQVEISVI_					0	0	0			REV__ENSG00000183011|ENST00000575771|NAA38	REV__ENSG00000183011|ENST00000575771|NAA38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.91424560546875	3	424.910115	1271.70852	0.01471	6.2503E-06	1.2837	0.00054548	1.2985	0.00055173	424.911276990603	32.644	2.6463	32.699	32.097	34.743	0.055309					345	95	6	0	0	0	0.36722	1	6120	6120		15.538	2.6825	1	42493000	+		26755	18231	15244	15245	33380	33380					0.08353009423467483
LSERQVEISVI	11	Unmodified	_LSERQVEISVI_					0	0	0			REV__ENSG00000183011|ENST00000575771|NAA38	REV__ENSG00000183011|ENST00000575771|NAA38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.867431640625	2	636.861534	1271.70852	0.68559	0.00043663	1.9872	0.0012655	2.6728	0.0017022	636.8628051662993	32.639	1.0729	32.694	32.182	33.255	0.055309					111	38	4	0	0	0	0.40129	1	6159	6159		13.615	0.5724	1	2072600	+		26756	18231	15244	15245	33381	33381					0.08353009423467483
LSERQVEISVI	11	Unmodified	_LSERQVEISVI_					0	0	0			REV__ENSG00000183011|ENST00000575771|NAA38	REV__ENSG00000183011|ENST00000575771|NAA38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.9141540527344	3	424.910115	1271.70852	-0.041165	-1.7492E-05	1.4546	0.00061806	1.4134	0.00060056	424.91132014552875	32.708	3.1994	32.762	32.167	35.367	0.054371					372	115	6	0	0	0	0.3826	1	6113	6113		13.519	2.6197	1	38533000	+		26757	18231	15244	15245	33382	33382					0.08353009423467483
LSERRHRRR	9	Unmodified	_LSERRHRRR_					0	0	0			REV__nc|ENSG00000122304|P04554-2|PRM2	REV__nc|ENSG00000122304|P04554-2|PRM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.2406005859375	3	422.585182	1264.73372	-0.18106	-7.6514E-05	1.4762	0.00062384	1.2952	0.00054732	422.58548734955895	26.316	0.33363	26.277	26.037	26.37	-0.038671					23	11	3	0	0	0	0.2615	1	4288	4288		2.4985	0	1	71411	+		26758	22974	15245	15246	33383	33383					0.1119396657991274
LSESHLFY	8	Unmodified	_LSESHLFY_					0	0	0			REV__ENST00000522957.1_1_8:53536344-53555381:-|nuORF	REV__ENST00000522957.1_1_8:53536344-53555381:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.2447814941406	2	498.245275	994.475997	0.0011601	5.7803E-07	-0.086124	-4.2911E-05	-0.084964	-4.2333E-05	498.2449874210291	25.436	0.75194	25.404	25.072	25.824	-0.03141					61	26	3	0	0	0	0.45015	1	4099	4099		5.7604	0	1	202160	+		26759	13469	15246	15247	33384	33384					-0.021462078564923104
LSESHLFY	8	Unmodified	_LSESHLFY_					0	0	0			REV__ENST00000522957.1_1_8:53536344-53555381:-|nuORF	REV__ENST00000522957.1_1_8:53536344-53555381:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	498.245275	994.475997	0.26961	0.00013433	-0.74141	-0.00036941	-0.4718	-0.00023507	498.2448364857258	25.358	0.70347	25.358	25.12	25.823	0	-0.030122	-0.00021509	NaN	5.7604	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175240	+		26760	13469	15246	15247							-0.021462078564923104
LSESHLFY	8	Unmodified	_LSESHLFY_					0	0	0			REV__ENST00000522957.1_1_8:53536344-53555381:-|nuORF	REV__ENST00000522957.1_1_8:53536344-53555381:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	498.245275	994.475997	0.10962	5.462E-05	-0.50539	-0.00025181	-0.39577	-0.00019719	498.2449957407914	25.457	0.69333	25.401	25.102	25.796	-0.055931	0.013597	2.01E-05	NaN	5.7604	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178650	+		26761	13469	15246	15247							-0.021462078564923104
LSESHLFY	8	Unmodified	_LSESHLFY_					0	0	0			REV__ENST00000522957.1_1_8:53536344-53555381:-|nuORF	REV__ENST00000522957.1_1_8:53536344-53555381:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.245275	994.475997	0.0011601	5.7803E-07	-0.086124	-4.2911E-05	-0.084964	-4.2333E-05	498.2449874210291	25.436	0.75194	25.404	25.072	25.824	-0.03141	0.016526	0.0004379	NaN	5.7604	61	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202160	+		26762	13469	15246	15247							-0.021462078564923104
LSESRIFLR	9	Unmodified	_LSESRIFLR_					0	0	0		ENST00000269122.7_2_17:57746275-57751020:+|nuORF	ENST00000269122.7_2_17:57746275-57751020:+|nuORF	ENST00000269122.7_2_17:57746275-57751020:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8525390625	2	560.827298	1119.64004	0.7481	0.00041955	-1.0136	-0.00056844	-0.26548	-0.00014889	560.8267026216331	47.018	0.26454	47.072	46.877	47.142	0.054371					12	8	2	0	0	0	0.23784	1	10621	10621		19.257	0	1	407420			26763	9072	15247	15248	33385	33385					0.08500809634256257
LSETLFFF	8	Unmodified	_LSETLFFF_					0	0	0			REV__CON__REFSEQ:XP_585019	REV__CON__REFSEQ:XP_585019	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.24749755859375	2	502.260394	1002.50623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.683	1	25.683	25.183	26.183	0								0	0	0	0.33941	1	4124	4124		19.439	2.3261	1		+	+	26764	13281	15248	15249	33386	33386					0.005081508087187103
LSEVCKLLS	9	Unmodified	_LSEVCKLLS_					0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.30389404296875	2	496.27826	990.541968	0.39339	0.00019523	-0.75725	-0.00037581	-0.36386	-0.00018058	496.2776391400993	75.559	0.53969	75.611	75.427	75.967	0.052361					32	19	2	0	0	0	0.21538	1	19396	19396		15.248	0.41021	1	110490	+		26765	14568	15249	15250	33387	33387					0.046318649940758405
LSEWDRPRKKL	11	Unmodified	_LSEWDRPRKKL_					0	0	0			REV__ENST00000601340.5_1_19:50061444-50083809:-|nuORF	REV__ENST00000601340.5_1_19:50061444-50083809:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.8066711425781	3	476.60877	1426.80448	0.30107	0.00014349	-0.42152	-0.0002009	-0.12045	-5.7409E-05	476.60853945367415	29.846	0.52817	29.858	29.532	30.06	0.012266					41	17	3	0	0	0	0.33303	1	5342	5342		2.4348	2.4348	1	199830	+		26766	22633	15250	15251	33388	33388					0.10815202054209294
LSEWDRPRKKL	11	Unmodified	_LSEWDRPRKKL_					0	0	0			REV__ENST00000601340.5_1_19:50061444-50083809:-|nuORF	REV__ENST00000601340.5_1_19:50061444-50083809:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	476.60877	1426.80448	0.29022	0.00013832	-0.4325	-0.00020613	-0.14228	-6.7813E-05	476.9429566661324	29.879	0.48323	29.879	29.605	30.088	0	0.02525	-0.00015286	NaN	2.4348	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213730	+		26767	22633	15250	15251							0.10815202054209294
LSEYVSCMKE	10	Unmodified	_LSEYVSCMKE_					0	0	0		nc|ENSG00000282100|Q58FF6|HSP90AB4P	nc|ENSG00000282100|Q58FF6|HSP90AB4P	nc|ENSG00000282100|Q58FF6|HSP90AB4P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.76806640625	2	594.7674	1187.52025	0.33866	0.00020142	0.010112	6.0144E-06	0.34877	0.00020744	594.7678926109866	31.648	0.53152	31.648	31.394	31.925	0					31	18	3	0	0	0	0.35637	1	5981	5981		11.495	0	1	374660			26768	12999	15251	15252	33389	33389					-0.06601307816822555
LSEYVSCMKE	10	Unmodified	_LSEYVSCMKE_					0	0	0		nc|ENSG00000282100|Q58FF6|HSP90AB4P	nc|ENSG00000282100|Q58FF6|HSP90AB4P	nc|ENSG00000282100|Q58FF6|HSP90AB4P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.820556640625	2	594.7674	1187.52025	0.38382	0.00022828	0.037886	2.2534E-05	0.42171	0.00025082	594.767672998565	31.607	0.42541	31.649	31.427	31.852	0.042366					19	14	2	0	0	0	0.31323	1	5919	5919		15.248	0	1	601750			26769	12999	15251	15252	33390	33390					-0.06601307816822555
LSFAKMVQWL	10	Unmodified	_LSFAKMVQWL_					0	0	0			REV__ENST00000474223.1_1_X:23803122-23803970:+|nuORF	REV__ENST00000474223.1_1_X:23803122-23803970:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.54522705078125	3	408.22661	1221.658	0.098071	4.0035E-05	2.5818	0.0010539	2.6798	0.001094	408.22777907863644	30.439	0.25597	30.467	30.354	30.61	0.027946					10	8	2	0	0	0	0.31597	1	5565	5565		8.4443	0	1	27343	+		26770	21391	15252	15253	33391	33391					0.056038085647742264
LSFCHRRYWF	10	Unmodified	_LSFCHRRYWF_					0	0	0			REV__ENST00000415794.1_1_3:139212993-139213512:+|nuORF	REV__ENST00000415794.1_1_3:139212993-139213512:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7922058105469	3	472.232758	1413.67644	-0.10254	-4.8425E-05	2.07	0.00097752	1.9675	0.0009291	472.2341276862475	27.647	0.20384	27.635	27.499	27.703	-0.011562					9	6	2	0	0	0	0.32068	1	4728	4728		3.5871	0.95582	1	44875	+		26771	20810	15253	15254	33392	33392					-0.013846367406586069
LSFDMWGLVS	10	Unmodified	_LSFDMWGLVS_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1;nc|ENSG00000127526|Q96K37-3|SLC35E1;ENST00000488894.1_1_19:16677303-16683001:-|nuORF	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.7900390625	2	577.781167	1153.54778	0.1464	8.4586E-05	-3.0596	-0.0017678	-2.9132	-0.0016832	577.7797009671982	59.396	0.25662	59.396	59.188	59.445	0					12	8	2	0	0	0	0.34325	1	14425	14425		13.906	1.3745	1	93448			26772	3325	15254	15255	33393	33393					-0.022850364942769374
LSFDRILKK	9	Unmodified	_LSFDRILKK_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.L722Wfs*49|1|0.27|ENSG00000162434|chr1:64844841-64844841|G/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3477172851562	2	560.347866	1118.68118	0.053893	3.0199E-05	-0.5886	-0.00032982	-0.53471	-0.00029962	560.347449610823	38.516	0.49669	38.516	38.269	38.765	0					40	17	3	0	0	0	0.022205	1	8030	8030		63.227	28.826	1	626160			26773	5572	15255	15256	33394	33394					0.1265857067376146
LSFDRILKK	9	Unmodified	_LSFDRILKK_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.L722Wfs*49|1|0.27|ENSG00000162434|chr1:64844841-64844841|G/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.34765625	2	560.347866	1118.68118	0.40258	0.00022558	-1.0566	-0.00059207	-0.65404	-0.00036649	560.3472488521812	38.465	0.54065	38.556	38.294	38.834	0.090881					41	19	3	0	0	0	0.059067	1	8008	8008		49.527	25.507	1	552550			26774	5572	15255	15256	33395	33395					0.1265857067376146
LSFDRILKK	9	Unmodified	_LSFDRILKK_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.L722Wfs*49|1|0.27|ENSG00000162434|chr1:64844841-64844841|G/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.3477172851562	2	560.347866	1118.68118	0.31179	0.00017471	-0.92436	-0.00051796	-0.61257	-0.00034325	560.3473301797911	38.415	0.57348	38.513	38.235	38.808	0.097527					46	20	3	0	0	0	0.068498	1	8011	8011		46.022	18.394	1	495620			26775	5572	15255	15256	33396	33396					0.1265857067376146
LSFEAILSHII	11	Unmodified	_LSFEAILSHII_					0	0	0			REV__ENSG00000205413|ENST00000379958|SAMD9	REV__ENSG00000205413|ENST00000379958|SAMD9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.9066162109375	3	414.907934	1241.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.567	1	40.66	40.16	41.16	0.09267								0	0	0	0.30988	1	8664	8664		17.049	1.5101	1		+		26776	18992	15256	15257	33397	33397					0.09079116262751086
LSFEGMLLF	9	Unmodified	_LSFEGMLLF_					0	0	0		ENST00000497660.5_1_1:8390216-8404070:+|nuORF;ENSG00000162426|ENST00000471889|SLC45A1	ENST00000497660.5_1_1:8390216-8404070:+|nuORF	ENST00000497660.5_1_1:8390216-8404070:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2713012695312	2	528.775354	1055.53615	0.48017	0.0002539	-2.8536	-0.0015089	-2.3734	-0.001255	528.7754000756801	87.461	1.497	87.548	87.119	88.616	0.08709					200	74	3	0	0	0	0.10075	1	23153	23153		38.151	9.6643	1	5582400			26777	5570	15257	15258	33398	33398					0.010607664823965024
LSFEGMLLF	9	Unmodified	_LSFEGMLLF_					0	0	0		ENST00000497660.5_1_1:8390216-8404070:+|nuORF;ENSG00000162426|ENST00000471889|SLC45A1	ENST00000497660.5_1_1:8390216-8404070:+|nuORF	ENST00000497660.5_1_1:8390216-8404070:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2713012695312	2	528.775354	1055.53615	0.59473	0.00031448	-2.9159	-0.0015418	-2.3211	-0.0012274	528.775372898778	87.556	1.604	87.551	87.171	88.775	-0.0056229					210	80	3	0	0	0	0.10075	2	23193	23193;23239		38.151	1.0484	1	5007100			26778	5570	15257	15258	33399;33400	33399					0.010607664823965024
LSFFFFFFFLF	11	Unmodified	_LSFFFFFFFLF_					0	0	0			REV__ENST00000344836.8_1_16:8986457-8986586:-|nuORF	REV__ENST00000344836.8_1_16:8986457-8986586:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.29248046875	3	503.593287	1507.75803	0.73639	0.00037084	-0.97069	-0.00048883	-0.2343	-0.00011799	503.92712037767126	60.737	0.2666	60.728	60.596	60.862	-0.0094566					15	9	2	0	0	0	0.32951	1	14906	14906		10.315	0.55098	1	208100	+		26779	20142	15258	15259	33401	33401					0.024463691702294454
LSFFLFFFFFF	11	Unmodified	_LSFFLFFFFFF_					0	0	0		ENST00000590628.1_1_19:28296947-28297304:+|nuORF	ENST00000590628.1_1_19:28296947-28297304:+|nuORF	ENST00000590628.1_1_19:28296947-28297304:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.2660827636719	3	503.593287	1507.75803	0.36517	0.0001839	-0.42662	-0.00021484	-0.061452	-3.0947E-05	503.59332862028157	58.626	1.6768	58.718	58.366	60.043	0.091305					207	59	6	0	0	0	0.32951	1	14624	14624		10.315	2.8382	1	15435000			26780	12173	15259	15260	33402	33402					0.02446369170206708
LSFFLSHQPY	10	Unmodified	_LSFFLSHQPY_					0	0	0		ENST00000448264.1_1_1:225888537-225888804:+|nuORF	ENST00000448264.1_1_1:225888537-225888804:+|nuORF	ENST00000448264.1_1_1:225888537-225888804:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.2043151855469	3	413.544996	1237.61316	-0.0015331	-6.34E-07	-2.6285	-0.001087	-2.6301	-0.0010876	413.8784283130973	29.642	0.090483	29.655	29.594	29.684	0.013474					4	2	2	0	0	0	0.3179	1	5331	5331		8.9762	4.2603	1	15605			26781	10613	15260	15261	33403	33403					0.0038570102310586662
LSFGKKEK	8	Unmodified	_LSFGKKEK_					0	0	0		ENST00000524739.1_1_11:134129171-134129964:+|nuORF;ENST00000527082.5_1_11:134129171-134129738:+|nuORF;ENST00000530533.5_1_11:134126456-134129738:+|nuORF;ENST00000533387.5_1_11:134123508-134129738:+|nuORF;ENST00000528325.5_1_11:134126509-134129738:+|nuORF;ENST00000524426.5_1_11:134126456-134131533:+|nuORF;nc|ENSG00000151498|Q9UKU7-2|ACAD8;ENST00000531338.5_1_11:134126482-134132106:+|nuORF;nc|ENSG00000151498|Q9UKU7-3|ACAD8;ENST00000526026.5_1_11:134126984-134132770:+|nuORF;ENSG00000151498|ENST00000281182|ACAD8	ENST00000524739.1_1_11:134129171-134129964:+|nuORF	ENST00000524739.1_1_11:134129171-134129964:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.77935791015625	2	468.779285	935.544017	0.078914	3.6993E-05	-0.21967	-0.00010298	-0.14076	-6.5985E-05	468.77916078290605	28.879	0.60381	28.879	28.64	29.244	0					33	21	2	0	0	0	0.40115	1	5111	5111		19.257	1.122	1	189720			26782	11525	15261	15262	33404	33404					0.07366661794173979
LSFGKKEK	8	Unmodified	_LSFGKKEK_					0	0	0		ENST00000524739.1_1_11:134129171-134129964:+|nuORF;ENST00000527082.5_1_11:134129171-134129738:+|nuORF;ENST00000530533.5_1_11:134126456-134129738:+|nuORF;ENST00000533387.5_1_11:134123508-134129738:+|nuORF;ENST00000528325.5_1_11:134126509-134129738:+|nuORF;ENST00000524426.5_1_11:134126456-134131533:+|nuORF;nc|ENSG00000151498|Q9UKU7-2|ACAD8;ENST00000531338.5_1_11:134126482-134132106:+|nuORF;nc|ENSG00000151498|Q9UKU7-3|ACAD8;ENST00000526026.5_1_11:134126984-134132770:+|nuORF;ENSG00000151498|ENST00000281182|ACAD8	ENST00000524739.1_1_11:134129171-134129964:+|nuORF	ENST00000524739.1_1_11:134129171-134129964:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	468.779285	935.544017	0.04489	2.1043E-05	0.088054	4.1278E-05	0.13294	6.2321E-05	468.7792535327502	28.849	0.57436	28.845	28.599	29.174	-0.0042572	-0.021082	0.00016114	NaN	19.257	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186080			26783	11525	15261	15262							0.07366661794173979
LSFGKKEK	8	Unmodified	_LSFGKKEK_					0	0	0		ENST00000524739.1_1_11:134129171-134129964:+|nuORF;ENST00000527082.5_1_11:134129171-134129738:+|nuORF;ENST00000530533.5_1_11:134126456-134129738:+|nuORF;ENST00000533387.5_1_11:134123508-134129738:+|nuORF;ENST00000528325.5_1_11:134126509-134129738:+|nuORF;ENST00000524426.5_1_11:134126456-134131533:+|nuORF;nc|ENSG00000151498|Q9UKU7-2|ACAD8;ENST00000531338.5_1_11:134126482-134132106:+|nuORF;nc|ENSG00000151498|Q9UKU7-3|ACAD8;ENST00000526026.5_1_11:134126984-134132770:+|nuORF;ENSG00000151498|ENST00000281182|ACAD8	ENST00000524739.1_1_11:134129171-134129964:+|nuORF	ENST00000524739.1_1_11:134129171-134129964:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	468.779285	935.544017	0.040601	1.9033E-05	0.059107	2.7708E-05	0.099707	4.6741E-05	468.77915401269695	28.874	0.43911	28.874	28.606	29.045	0.0004673	0.0084475	0.000134	NaN	19.257	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188640			26784	11525	15261	15262							0.07366661794173979
LSFIAKTLGAI	11	Unmodified	_LSFIAKTLGAI_					0	0	0		ENSG00000134538|ENST00000256958|SLCO1B1	ENSG00000134538|ENST00000256958|SLCO1B1	ENSG00000134538|ENST00000256958|SLCO1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.83154296875	2	567.350074	1132.6856	0.31862	0.00018077	-0.1817	-0.00010308	0.13693	7.7687E-05	567.3499723046274	69.409	1.0093	69.475	68.958	69.967	0.06604					74	35	3	0	0	0	0.30708	1	17596	17596		21.59	2.8689	1	499640			26785	3794	15262	15263	33405	33405					0.12456035096670348
LSFIMSNF	8	Oxidation (M)	_LSFIM(Oxidation (M))SNF_		LSFIM(1)SNF		LSFIM(42)SNF	0	0	1		ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7381286621094	2	487.736228	973.457904	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.913	1	25.874	25.374	26.374	-0.038671								0	0	0	0.21415	1	4198	4198		42.095	7.9921	1				26786	5431	15263	15264	33406	33406		654			-0.029886661028285744
LSFIQGYKFI	10	Unmodified	_LSFIQGYKFI_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.8974609375	3	405.897258	1214.66995	-0.2671	-0.00010841	0.57906	0.00023504	0.31197	0.00012663	405.8975904299802	18.978	0.70033	18.86	18.414	19.114	-0.11739					52	24	3	0	0	0	0.4022	1	2092	2092		3.0723	1.1659	1	73735			26787	595	15264	15265	33407	33407					0.07119748579611951
LSFKESVAF	9	Unmodified	_LSFKESVAF_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000486102.5_1_3:49728598-49742525:+|nuORF;ENST00000487805.6_1_3:49728598-49737610:+|nuORF	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2584228515625	2	514.276575	1026.5386	0.38026	0.00019556	0.75739	0.00038951	1.1376	0.00058507	514.2767509937925	68.755	0.87798	68.755	68.491	69.369	0					76	31	3	0	0	0	0.25989	1	17506	17506		14.838	0.93222	1	704920			26788	5778	15265	15266	33408	33408					0.026389382117031346
LSFKGDLKLL	10	Unmodified	_LSFKGDLKLL_					0	0	0			REV__AHSG|p.V127L|1|0.21|ENSG00000145192|chr3:186616497-186616497|G/T|missense_variant	REV__AHSG|p.V127L|1|0.21|ENSG00000145192|chr3:186616497-186616497|G/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.8316650390625	2	567.350074	1132.6856	0.15894	9.0172E-05	-0.0037342	-2.1186E-06	0.1552	8.8054E-05	567.3500357306059	69.431	0.85771	69.409	68.946	69.804	-0.022087					70	30	3	0	0	0	0.19885	1	17571	17571		32.786	2.0822	1	512330	+		26789	13094	15266	15267	33409	33409					0.12456035096647611
LSFLFIHIYL	10	Unmodified	_LSFLFIHIYL_					0	0	0		ENST00000333274.10_1_5:107006316-107006475:-|nuORF	ENST00000333274.10_1_5:107006316-107006475:-|nuORF	ENST00000333274.10_1_5:107006316-107006475:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.82470703125	2	633.368267	1264.72198	0.1652	0.00010463	1.758	0.0011135	1.9232	0.0012181	633.369571312801	100	0.16577	100.04	99.975	100.14	0.038994					42	22	2	0	0	0	0.32123	1	26741	26741		0.40072	0.050084	1	111330			26790	9459	15267	15268	33410	33410					0.10020911993365189
LSFLFIHIYL	10	Unmodified	_LSFLFIHIYL_					0	0	0		ENST00000333274.10_1_5:107006316-107006475:-|nuORF	ENST00000333274.10_1_5:107006316-107006475:-|nuORF	ENST00000333274.10_1_5:107006316-107006475:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	633.368267	1264.72198	0.4157	0.00026329	1.5721	0.00099573	1.9878	0.001259	633.3693622422935	100.09	0.12595	100.08	100.03	100.15	-0.0069046	0.037337	-0.00035523	NaN	0.40072	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149910			26791	9459	15267	15268							0.10020911993365189
LSFLFVDV	8	Unmodified	_LSFLFVDV_					0	0	0		ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD	ENSG00000158796|ENST00000368006|DEDD	ENSG00000158796|ENST00000368006|DEDD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.268798828125	2	470.262936	938.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.498	1	55.479	54.979	55.979	-0.019081								0	0	0	0.19909	1	13249	13249		44.407	2.3125	1				26792	5373	15268	15269	33411	33411					0.03960454671323532
LSFLHCLTL	9	Unmodified	_LSFLHCLTL_					0	0	0		ENST00000381396.9_1_16:19535357-19543792:+|nuORF	ENST00000381396.9_1_16:19535357-19543792:+|nuORF	ENST00000381396.9_1_16:19535357-19543792:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2645263671875	2	523.788795	1045.56304	0.49914	0.00026144	-2.5121	-0.0013158	-2.013	-0.0010544	523.786129285055	53.141	0.35351	53.131	52.812	53.166	-0.0096092					17	12	2	0	0	0	0.24311	1	12468	12468		11.64	0.81637	1	289940			26793	9999	15269	15270	33412	33412					0.04207875093561597
LSFLMSLL	8	Unmodified	_LSFLMSLL_					0	0	0		nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.283447265625	2	462.267164	922.519776	0.26286	0.00012151	-2.1624	-0.00099959	-1.8995	-0.00087809	462.2665661327947	88.772	1.335	88.769	87.952	89.287	-0.0028458					111	59	4	0	0	0	0.32038	1	23500	23500		28.487	5.3384	1	2218300			26794	7561	15270	15271	33413	33413					0.05541685316291023
LSFNANDIIDI	11	Unmodified	_LSFNANDIIDI_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.22747802734375	3	412.215316	1233.62412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.005	1	16.887	16.387	17.387	-0.11739								0	0	0	0.35034	1	1501	1501		4.1166	1.4854	1				26795	5309	15271	15272	33414	33414					0.01665058606704406
LSFNKTVK	8	Unmodified	_LSFNKTVK_					0	0	0			REV__ENSG00000048405|ENST00000265827|ZNF800	REV__ENSG00000048405|ENST00000265827|ZNF800	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.77923583984375	2	468.779285	935.544017	0.04489	2.1043E-05	0.088054	4.1278E-05	0.13294	6.2321E-05	468.7792535327502	28.849	0.57436	28.845	28.599	29.174	-0.0042572					26	19	2	0	0	0	0.41087	1	5095	5095		18.146	0	1	186080	+		26796	13549	15272	15273	33415	33415					0.07366661794185347
LSFPLGPPVE	10	Unmodified	_LSFPLGPPVE_					0	0	0			REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.776611328125	2	528.292225	1054.5699	0.2192	0.0001158	-1.1579	-0.00061172	-0.93872	-0.00049592	528.2917667114624	76.577	0.073059	76.63	76.592	76.665	0.053413					4	2	2	0	0	0	0.31267	1	19723	19723		14.838	3.198	1	32155	+		26797	19168	15273	15274	33416	33416					0.044795112457904906
LSFPPFCP	8	Unmodified	_LSFPPFCP_					0	0	0			REV__ENST00000492310.5_1_7:43153648-43477745:+|nuORF	REV__ENST00000492310.5_1_7:43153648-43477745:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2168884277344	2	454.222757	906.430961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.025	1	17.908	17.408	18.408	-0.11739								0	0	0	0.36961	1	1809	1809		5.7604	0	1		+		26798	21622	15274	15275	33417	33417					-0.025997299233722515
LSFSITTWP	9	Unmodified	_LSFSITTWP_					0	0	0		ENST00000429985.1_1_2:27293569-27294269:-|nuORF	ENST00000429985.1_1_2:27293569-27294269:-|nuORF	ENST00000429985.1_1_2:27293569-27294269:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.27685546875	2	526.276575	1050.5386	0.45905	0.00024159	0.29337	0.00015439	0.75242	0.00039598	526.2764395854747	59.175	0.76694	59.175	58.712	59.479	0					54	26	3	0	0	0	0.068501	1	14379	14379		46.021	2.1627	1	590800			26799	10459	15275	15276	33418	33418					0.015349382116937704
LSFSITTWP	9	Unmodified	_LSFSITTWP_					0	0	0		ENST00000429985.1_1_2:27293569-27294269:-|nuORF	ENST00000429985.1_1_2:27293569-27294269:-|nuORF	ENST00000429985.1_1_2:27293569-27294269:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	526.276575	1050.5386	0.45905	0.00024159	0.29337	0.00015439	0.75242	0.00039598	526.2764395854747	59.175	0.76694	59.175	58.712	59.479	0	0.044225	-0.00012615	NaN	46.021	54	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	590800			26800	10459	15275	15276							0.015349382116937704
LSFSLITYFFI	11	Unmodified	_LSFSLITYFFI_					0	0	0			REV__ENST00000373840.8_1_9:123943038-123943272:-|nuORF	REV__ENST00000373840.8_1_9:123943038-123943272:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.9161376953125	3	450.916319	1349.72713	0.14512	6.5439E-05	-0.1161	-5.2353E-05	0.02902	1.3086E-05	450.91613905589077	17.562	0.90249	17.562	17.122	18.024	0					95	30	4	0	0	0	0.45202	1	1640	1640		4.4062	0.28952	1	673120	+		26801	20452	15276	15277	33419	33419					0.06625171065320501
LSFTIPVTI	9	Unmodified	_LSFTIPVTI_					0	0	0			REV__ENST00000261569.11_1_5:66300649-66300712:+|nuORF	REV__ENST00000261569.11_1_5:66300649-66300712:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2665100097656	2	495.797143	989.579734	0.34796	0.00017252	1.7294	0.00085741	2.0773	0.0010299	495.79700947866917	80.22	0.54169	80.285	79.951	80.493	0.065094					25	20	2	0	0	0	0.23784	1	20830	20830		19.257	3.4098	1	117160	+		26802	19597	15277	15278	33420	33420					0.0845269925117691
LSFVDTRTL	9	Unmodified	_LSFVDTRTL_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3056640625	2	526.292756	1050.57096	0.81855	0.0004308	-0.2304	-0.00012126	0.58816	0.00030954	526.2925659659911	55.062	0.52693	55.043	54.793	55.319	-0.019081					36	19	2	0	0	0	0.00054549	1	13096	13096		128.57	59.468	1	1043200			26803	5867	15278	15279	33421	33421					0.04769725614710296
LSFVDTRTL	9	Unmodified	_LSFVDTRTL_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	526.292756	1050.57096	0.88162	0.00046399	-0.063413	-3.3374E-05	0.81821	0.00043062	526.292600294439	54.946	0.41362	54.946	54.761	55.174	0	-0.036145	8.8295E-05	NaN	128.57	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	817280			26804	5867	15278	15279							0.04769725614710296
LSFVDTRTL	9	Unmodified	_LSFVDTRTL_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	526.292756	1050.57096	0.75372	0.00039668	-0.06685	-3.5182E-05	0.68687	0.00036149	526.292643721106	54.894	0.48702	54.957	54.75	55.237	0.063202	-0.02498	8.4678E-05	NaN	128.57	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1204700			26805	5867	15278	15279							0.04769725614710296
LSFVPFMTYI	10	Unmodified	_LSFVPFMTYI_					0	0	0			REV__nc|ENSG00000166377|O43861-2|ATP9B	REV__nc|ENSG00000166377|O43861-2|ATP9B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.9083251953125	3	406.547349	1216.62022	-0.034939	-1.4204E-05	0.8191	0.000333	0.78416	0.0003188	406.5477090740638	30.624	0.48701	30.652	30.382	30.869	0.027946					27	16	2	0	0	0	0.31942	1	5650	5650		6.1918	2.3155	1	150880	+		26806	17315	15279	15280	33422	33422					0.020572975793129444
LSFVYNHY	8	Unmodified	_LSFVYNHY_					0	0	0		ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.78759765625	2	521.753267	1041.49198	0.50614	0.00026408	0.46024	0.00024013	0.96639	0.00050422	521.7526069214184	23.872	0.16681	23.833	23.711	23.878	-0.038927					8	5	2	0	0	0	0.34337	1	3575	3575		5.2307	0	1	35368			26807	8026	15280	15281	33423	33423					-0.027105016195719145
LSFWRVCE	8	Unmodified	_LSFWRVCE_					0	0	0			REV__ENST00000373511.6_1_9:128434738-128434789:-|nuORF	REV__ENST00000373511.6_1_9:128434738-128434789:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2554321289062	2	520.25512	1038.49569	0.53289	0.00027724	0.43657	0.00022713	0.96946	0.00050437	520.2550880230604	92.054	0.69686	92.055	91.755	92.451	0.00046539					136	46	4	0	0	0	0.4354	1	24449	24449		10.824	10.824	1	573370	+		26808	20439	15281	15282	33424	33424					-0.022021551173565967
LSFWRVCE	8	Unmodified	_LSFWRVCE_					0	0	0			REV__ENST00000373511.6_1_9:128434738-128434789:-|nuORF	REV__ENST00000373511.6_1_9:128434738-128434789:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	520.25512	1038.49569	0.38318	0.00019935	0.77067	0.00040094	1.1538	0.0006003	520.2552498631395	92.07	0.60437	92.07	91.827	92.431	0	0.018625	0.00016363	NaN	10.824	121	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325700	+		26809	20439	15281	15282							-0.022021551173565967
LSFWRVCE	8	Unmodified	_LSFWRVCE_					0	0	0			REV__ENST00000373511.6_1_9:128434738-128434789:-|nuORF	REV__ENST00000373511.6_1_9:128434738-128434789:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	520.25512	1038.49569	0.36415	0.00018945	0.67213	0.00034968	1.0363	0.00053913	520.2551679313466	91.938	0.63119	92.028	91.808	92.439	0.090668	-0.022507	6.1102E-05	NaN	10.824	119	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	645740	+		26810	20439	15281	15282							-0.022021551173565967
LSFWRVCE	8	Unmodified	_LSFWRVCE_					0	0	0			REV__ENST00000373511.6_1_9:128434738-128434789:-|nuORF	REV__ENST00000373511.6_1_9:128434738-128434789:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	520.25512	1038.49569	0.53289	0.00027724	0.43657	0.00022713	0.96946	0.00050437	520.2550880230604	92.054	0.69686	92.055	91.755	92.451	0.00046539	0.0038814	-0.000184	NaN	10.824	136	46	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573370	+		26811	20439	15281	15282							-0.022021551173565967
LSFYEAYSF	9	Unmodified	_LSFYEAYSF_					0	0	0			REV__nc|ENSG00000100628|Q96Q27-1|ASB2	REV__nc|ENSG00000100628|Q96Q27-1|ASB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3189697265625	2	563.758215	1125.50188	0.33294	0.0001877	-0.55451	-0.00031261	-0.22158	-0.00012491	563.758264083738	71.774	0.3811	71.774	71.582	71.963	0					36	13	4	0	0	0	0.17611	1	18247	18247		34.102	7.7612	1	273150	+		26812	22913	15282	15283	33425	33425					-0.05585358404869112
LSFYEAYSF	9	Unmodified	_LSFYEAYSF_					0	0	0			REV__nc|ENSG00000100628|Q96Q27-1|ASB2	REV__nc|ENSG00000100628|Q96Q27-1|ASB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.319580078125	2	563.758215	1125.50188	0.401	0.00022606	-0.82571	-0.0004655	-0.42472	-0.00023944	563.7583693843136	71.692	0.43988	71.749	71.537	71.977	0.056572					40	15	4	0	0	0	0.19839	1	18236	18236		28.487	4.2769	1	250740	+		26813	22913	15282	15283	33426	33426					-0.05585358404869112
LSFYFDEAT	9	Unmodified	_LSFYFDEAT_					0	0	0			REV__ENST00000565579.5_1_16:57702259-57712261:+|nuORF	REV__ENST00000565579.5_1_16:57702259-57712261:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7958374023438	2	546.747847	1091.48114	0.55411	0.00030296	1.6188	0.0008851	2.1729	0.0011881	546.748449035977	39.709	0.49897	39.808	39.539	40.038	0.099407					22	17	2	0	0	0	0.25526	1	8410	8410		1.8442	0	1	142680	+		26814	18224	15283	15284	33427	33427					-0.06093948784518943
LSGADLGEDT	10	Unmodified	_LSGADLGEDT_					0	0	0			REV__ENST00000309170.7_1_3:150937362-150996105:-|nuORF	REV__ENST00000309170.7_1_3:150937362-150996105:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.78253173828125	2	489.224736	976.43492	0.26149	0.00012793	-0.50284	-0.000246	-0.24135	-0.00011807	489.2248231961096	33.337	0.41919	33.337	33.145	33.564	0					23	14	3	0	0	0	0.30586	1	6472	6472		19.257	0	1	104650	+		26815	19887	15284	15285	33428	33428					-0.05424013686615581
LSGARSPRQL	10	Unmodified	_LSGARSPRQL_					0	0	0			REV__ENSG00000165238|ENST00000427277|WNK2	REV__ENSG00000165238|ENST00000427277|WNK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.3012084960938	2	542.814722	1083.61489	0.16637	9.0311E-05	-2.1181	-0.0011497	-1.9517	-0.0010594	542.8135159846935	39.613	0.59569	39.613	39.454	40.05	0					26	21	2	0	0	0	0.33817	1	8398	8398		14.838	5.4908	1	128210	+		26816	17219	15285	15286	33429	33429					0.07642754831704224
LSGDARRIT	9	Unmodified	_LSGDARRIT_					0	0	0			REV__nc|ENSG00000068885|Q9P2H3-2|IFT80	REV__nc|ENSG00000068885|Q9P2H3-2|IFT80	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.77239990234375	2	494.780348	987.546142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.726	1	14.726	14.226	15.226	0								0	0	0	0.2362	1	812	812		10.824	0	1		+		26817	13707	15286	15287	33430	33430					0.051870905319901794
LSGDPLLQR	9	Unmodified	_LSGDPLLQR_					0	0	0			REV__nc|ENSG00000067141|Q92859-3|NEO1	REV__nc|ENSG00000067141|Q92859-3|NEO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.79742431640625	2	499.785099	997.555644	0.37364	0.00018674	0.085798	4.288E-05	0.45943	0.00022962	499.7852047588091	49.882	1.025	49.882	49.408	50.433	0					102	37	4	0	0	0	0.21303	1	11663	11663		21.747	2.4897	1	4210400	+		26818	13685	15287	15288	33431	33431					0.05676858817514585
LSGFFNPQSFL	11	Unmodified	_LSGFFNPQSFL_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.2988891601562	2	628.819138	1255.62372	0.32312	0.00020318	-0.21389	-0.0001345	0.10923	6.8687E-05	628.8190938683557	67.109	0.45903	67.109	66.909	67.368	0					28	15	2	0	0	0	0.37585	1	16824	16824		14.405	2.1647	1	231160			26819	2033	15288	15289	33432	33432					0.006136836775112897
LSGFLELLV	9	Unmodified	_LSGFLELLV_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7847900390625	2	495.797143	989.579734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.2	1	45.276	44.776	45.776	0.075047								0	0	0	0.17683	1	10073	10073		28.487	0	1				26820	653	15289	15290	33433	33433					0.08452699251188278
LSGGQKRK	8	Unmodified	_LSGGQKRK_					0	0	0		nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ENSG00000154265|ENST00000392676|ABCA5;ENST00000541225.5_1_17:66883094-66937097:-|nuORF;ENSG00000141338|ENST00000586539|ABCA8;nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ABCA10|p.S690Qfs*2|1|0.25|ENSG00000154263|chr17:69190421-69190421|A/-|frameshift_variant	nc|ENSG00000154265|Q8WWZ7-2|ABCA5;nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.8947448730469	2	437.266876	872.519199	0.13392	5.8558E-05	-3.9874	-0.0017436	-3.8535	-0.001685	437.2649953376843	19.799	0.41402	19.744	19.516	19.93	-0.055693					24	14	2	0	0	0	0.33245	1	2339	2339		19.439	1.304	1	31437			26821	5117;5118	15290	15291	33434	33434					0.0778402671146523
LSGGQKRK	8	Unmodified	_LSGGQKRK_					0	0	0		nc|ENSG00000154265|Q8WWZ7-2|ABCA5;ENSG00000154265|ENST00000392676|ABCA5;ENST00000541225.5_1_17:66883094-66937097:-|nuORF;ENSG00000141338|ENST00000586539|ABCA8;nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ABCA10|p.S690Qfs*2|1|0.25|ENSG00000154263|chr17:69190421-69190421|A/-|frameshift_variant	nc|ENSG00000154265|Q8WWZ7-2|ABCA5;nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	437.266876	872.519199	-0.1206	-5.2735E-05	-3.472	-0.0015182	-3.5926	-0.0015709	437.2652932610694	19.708	0.55804	19.708	19.401	19.96	0	-0.01139	1.1038E-05	NaN	19.439	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38702			26822	5117;5118	15290	15291							0.0778402671146523
LSGGSTLFK	9	Unmodified	_LSGGSTLFK_					0	0	0		ENSG00000138107|ENST00000369905|ACTR1A;ENSG00000115073|ENST00000289228|ACTR1B;ENST00000470322.5_1_10:104240622-104242055:-|nuORF	ENSG00000138107|ENST00000369905|ACTR1A	ENSG00000138107|ENST00000369905|ACTR1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.9150695800781	2	455.255643	908.496732	-0.22179	-0.00010097	0.15905	7.2407E-05	-0.062747	-2.8566E-05	455.25565510486143	38.865	0.77765	38.865	38.295	39.073	0					52	27	3	0	0	0	0.24848	1	8175	8175		13.906	1.3745	1	312990			26823	2604	15291	15292	33435	33435					0.03882382523192973
LSGHLLKPR	9	Unmodified	_LSGHLLKPR_					0	0	0		nc|ENSG00000111850|Q5TEZ4|LINC01590	nc|ENSG00000111850|Q5TEZ4|LINC01590	nc|ENSG00000111850|Q5TEZ4|LINC01590	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2752685546875	2	510.819276	1019.624	0.34651	0.00017701	-0.10868	-5.5515E-05	0.23783	0.00012149	510.8190709056997	20.284	0.39016	20.284	20.18	20.57	0					17	13	2	0	0	0	0.25622	1	2514	2514		7.2892	0.56607	1	62608			26824	12652	15292	15293	33436	33436					0.11497148188038864
LSGIQKEIKY	10	Unmodified	_LSGIQKEIKY_					0	0	0		ENSG00000198774|ENST00000361228|RASSF9	ENSG00000198774|ENST00000361228|RASSF9	ENSG00000198774|ENST00000361228|RASSF9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8449096679688	2	589.842613	1177.67067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.33	1	100.37	99.866	100.87	0.038994								0	0	0	0.37739	1	26811	26811		3.2813	0.28607	1				26825	8123	15293	15294	33437	33437					0.08894543228666407
LSGKKNIVE	9	Unmodified	_LSGKKNIVE_					0	0	0		ENST00000554270.5_1_14:88936247-89016761:-|nuORF;ENSG00000070778|ENST00000556564|PTPN21	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2790222167969	2	494.295299	986.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.948	1	82.017	81.517	82.517	0.068993								0	0	0	0.20639	1	21360	21360		20.454	4.6064	1				26826	942	15294	15295	33438	33438					0.08222029477337855
LSGKLGTPK	9	Unmodified	_LSGKLGTPK_					0	0	0		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.26336669921875	2	450.779285	899.544017	0.10341	4.6617E-05	-0.54129	-0.000244	-0.43788	-0.00019739	450.77904485939723	23.043	0.27365	22.999	22.76	23.033	-0.044867					12	9	2	0	0	0	0.19839	1	3326	3326		28.487	3.813	1	15009			26827	5478	15295	15296	33439	33439					0.09022661794199394
LSGKQRLQQ	9	Unmodified	_LSGKQRLQQ_					0	0	0		ENST00000607322.1_1_9:100000884-100000956:-|nuORF	ENST00000607322.1_1_9:100000884-100000956:-|nuORF	ENST00000607322.1_1_9:100000884-100000956:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3219604492188	2	529.309272	1056.60399	0.43526	0.00023039	-0.32686	-0.00017301	0.10839	5.7374E-05	529.309084974058	23.158	0.68252	23.113	22.873	23.556	-0.044867					55	24	3	0	0	0	0.19747	1	3327	3327		24.021	3.5669	1	389270			26828	12309	15296	15297	33440	33440					0.07795352457424087
LSGLAWHPP	9	Unmodified	_LSGLAWHPP_					0	0	0			REV__ENST00000570950.1_1_16:2906057-2907066:-|nuORF	REV__ENST00000570950.1_1_16:2906057-2907066:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.26336669921875	2	489.263802	976.513051	-0.089235	-4.3659E-05	-0.95586	-0.00046767	-1.0451	-0.00051133	489.2633544522343	13.153	0.50802	13.085	12.851	13.359	-0.067495					46	17	4	0	0	0	0.25622	1	340	340		7.2892	2.0586	1	236600	+		26829	22416	15297	15298	33441	33441					0.023855084799379256
LSGLDDGARL	10	Unmodified	_LSGLDDGARL_					0	0	0			REV__ENST00000496239.5_1_1:16776277-16776712:+|nuORF	REV__ENST00000496239.5_1_1:16776277-16776712:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.9053649902344	2	508.772188	1015.52982	0.031984	1.6273E-05	0.60674	0.00030869	0.63873	0.00032497	508.7719478962368	25.834	1.0192	25.795	25.442	26.461	-0.038671					65	35	4	0	0	0	0.27979	1	4170	4170		27.629	5.8822	1	582280	+		26830	21668	15298	15299	33442	33442					0.022679645752418764
LSGLKWSY	8	Unmodified	_LSGLKWSY_					0	0	0			REV__ENST00000405409.6_2_22:36137158-36137320:-|nuORF	REV__ENST00000405409.6_2_22:36137158-36137320:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.8028869628906	2	477.258185	952.501818	0.39033	0.00018629	-0.066976	-3.1965E-05	0.32336	0.00015432	477.25814127399167	45.071	0.6137	45.139	44.843	45.456	0.068569					26	21	2	0	0	0	0.34046	1	10066	10066		14.582	1.0738	1	154750	+		26831	20732	15299	15300	33443	33443					0.02366686385801131
LSGLYPSPF	9	Unmodified	_LSGLYPSPF_					0	0	0		nc|ENSG00000105520|Q96GM1-2|PLPPR2;ENSG00000105520|ENST00000688289|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	nc|ENSG00000105520|Q96GM1-2|PLPPR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.3026123046875	2	490.758018	979.501483	0.61332	0.00030099	3.0899	0.0015164	3.7032	0.0018174	490.75922284752403	45.922	0.36528	45.922	45.72	46.085	0					19	12	2	0	0	0	0.24311	1	10318	10318		16.942	2.104	1	297200			26832	1990	15300	15301	33444	33444					0.010912666659578463
LSGMLIYPLFR	11	Unmodified	_LSGMLIYPLFR_					0	0	0			REV__ENST00000448810.5_1_5:131726469-131729504:+|nuORF	REV__ENST00000448810.5_1_5:131726469-131729504:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.7455749511719	3	437.249415	1308.72641	0.16409	7.1746E-05	-1.6377	-0.00071608	-1.4736	-0.00064433	437.2482146786848	35.901	0.62273	35.983	35.739	36.362	0.082355					39	22	3	0	0	0	0.33122	1	7209	7209		4.4062	1.7749	1	705080	+		26833	18731	15301	15302	33445	33445					0.08440053144613557
LSGNLERFL	9	Unmodified	_LSGNLERFL_					0	0	0			REV__ENST00000513237.5_1_4:106198994-106199042:+|nuORF	REV__ENST00000513237.5_1_4:106198994-106199042:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8115234375	2	524.792924	1047.57129	0.55727	0.00029245	0.57938	0.00030405	1.1367	0.00059651	524.7931418487746	48.63	0.7928	48.662	48.387	49.18	0.032043					50	28	2	0	0	0	0.063853	1	11066	11066		47.749	11.622	1	2715300	+		26834	21821	15302	15303	33446	33446					0.049411453345555856
LSGNRNEL	8	Unmodified	_LSGNRNEL_					0	0	0			REV__ENSG00000010671|ENST00000308731|BTK	REV__ENSG00000010671|ENST00000308731|BTK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.73809814453125	2	451.738148	901.461744	-0.021597	-9.7562E-06	0.08006	3.6166E-05	0.058463	2.641E-05	451.7381192035586	17.321	0.66638	17.203	16.965	17.631	-0.11739					46	23	3	0	0	0	0.34294	1	1633	1633		7.2892	0	1	116910	+		26835	13418	15303	15304	33447	33447					0.007071397152230929
LSGNRNEL	8	Unmodified	_LSGNRNEL_					0	0	0			REV__ENSG00000010671|ENST00000308731|BTK	REV__ENSG00000010671|ENST00000308731|BTK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	451.738148	901.461744	0.24614	0.00011119	-0.22827	-0.00010312	0.017866	8.0708E-06	451.73787675824383	17.224	0.61489	17.164	16.887	17.502	-0.060429	-0.019767	-0.00014643	NaN	7.2892	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87656	+		26836	13418	15303	15304							0.007071397152230929
LSGNRNPLA	9	Unmodified	_LSGNRNPLA_					0	0	0			REV__nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	REV__nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2513122558594	2	471.261791	940.509028	0.047979	2.2611E-05	-0.35253	-0.00016613	-0.30455	-0.00014352	471.2615375255771	24.919	0.51374	24.919	24.639	25.153	0					43	17	3	0	0	0	0.28128	1	3963	3963		11.64	0.52583	1	213770	+		26837	14141	15304	15305	33448	33448					0.036394189862335224
LSGPRLLFK	9	Unmodified	_LSGPRLLFK_					0	0	0		nc|ENSG00000189266|Q9NPJ4-2|PNRC2;ENSG00000189266|ENST00000334351|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.823974609375	2	515.824027	1029.6335	0.44605	0.00023008	-0.12764	-6.5837E-05	0.31841	0.00016424	515.8238698255459	44.504	0.62424	44.572	44.298	44.922	0.068569					50	22	3	0	0	0	0.13296	1	9879	9879		33.445	3.6043	1	391560			26838	12890	15305	15306	33449	33449					0.11986916473574638
LSGPRLLFK	9	Unmodified	_LSGPRLLFK_					0	0	0		nc|ENSG00000189266|Q9NPJ4-2|PNRC2;ENSG00000189266|ENST00000334351|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	515.824027	1029.6335	0.59298	0.00030587	-0.22055	-0.00011376	0.37243	0.00019211	515.8238698023277	44.682	0.57948	44.682	44.436	45.015	0	0.076572	-8.8918E-05	NaN	33.445	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317220			26839	12890	15305	15306							0.11986916473574638
LSGRHNPAP	9	Unmodified	_LSGRHNPAP_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.73529052734375	2	474.754133	947.493713	0.036126	1.7151E-05	-1.6212	-0.00076965	-1.585	-0.0007525	474.75326372712146	15.582	0.6601	15.472	15.093	15.753	-0.10981					52	22	3	0	0	0	0.25811	1	1111	1111		5.2307	0	1	148750	+		26840	16853	15306	15307	33450	33450					0.017865521890371383
LSGRPYRHI	9	Unmodified	_LSGRPYRHI_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2;ENST00000464455.1_1_X:18942433-18943881:-|nuORF	ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7828369140625	2	549.811982	1097.60941	0.84001	0.00046185	-2.1846	-0.0012011	-1.3446	-0.00073928	549.8110532613109	48.321	0.45894	48.369	48.204	48.663	0.04752					29	16	2	0	0	0	0.24688	1	11079	11079		10.074	0	1	241020			26841	621	15307	15308	33451	33451					0.06451076039888903
LSGRQAKGLT	10	Unmodified	_LSGRQAKGLT_					0	0	0		nc|ENSG00000137135|Q8N4T4-2|ARHGEF39;nc|ENSG00000137135|Q8N4T4-4|ARHGEF39;ENSG00000137135|ENST00000378387|ARHGEF39	nc|ENSG00000137135|Q8N4T4-2|ARHGEF39	nc|ENSG00000137135|Q8N4T4-2|ARHGEF39	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.8037719726562	2	515.803823	1029.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.64	1	26.601	26.101	27.101	-0.038671								0	0	0	0.32365	1	4417	4417		24.991	1.8425	1				26842	4029	15308	15309	33452	33452					0.07947950083121214
LSGRVLKVE	9	Unmodified	_LSGRVLKVE_					0	0	0		ENST00000490010.1_1_13:103249388-103260038:+|nuORF	ENST00000490010.1_1_13:103249388-103260038:+|nuORF	ENST00000490010.1_1_13:103249388-103260038:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8293762207031	2	500.811116	999.60768	0.40986	0.00020526	0.7757	0.00038848	1.1856	0.00059375	501.3128361153232	38.29	0.13501	38.381	38.264	38.399	0.090881					6	4	2	0	0	0	0.2451	1	7947	7947		6.7232	0.51738	1	104190			26843	11158	15309	15310	33453	33453					0.10786022231275183
LSGSDLHPQ	9	Unmodified	_LSGSDLHPQ_					0	0	0			REV__nc|ENSG00000185920|Q13635-4|PTCH1	REV__nc|ENSG00000185920|Q13635-4|PTCH1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.2502136230469	2	477.237981	952.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.796	1	15.796	15.296	16.296	0								0	0	0	0.21726	1	1134	1134		16.942	0	1		+		26844	18419	15310	15311	33454	33454					-0.01672280004629556
LSGSIEKLL	9	Unmodified	_LSGSIEKLL_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7533264160156	2	480.292225	958.569897	0.42625	0.00020473	-0.23975	-0.00011515	0.1865	8.9575E-05	480.2920121823698	59.441	0.45319	59.43	59.199	59.652	-0.011486					31	15	3	0	0	0	0.20167	1	14397	14397		29.082	2.1979	1	361700	+		26845	17179	15311	15312	33455	33455					0.08895511245816579
LSGSKRYLSDL	11	Unmodified	_LSGSKRYLSDL_					0	0	0		nc|ENSG00000162398|Q3ZCV2-2|CIMAP2;ENSG00000162398|ENST00000371273|LEXM	nc|ENSG00000162398|Q3ZCV2-2|CIMAP2	nc|ENSG00000162398|Q3ZCV2-2|CIMAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.5627746582031	3	413.562827	1237.66665	-0.3662	-0.00015145	0.30822	0.00012747	-0.057979	-2.3978E-05	413.56294281319725	39.526	0.8904	39.526	39.242	40.132	0					95	32	4	0	0	0	0.36722	1	8347	8347		15.538	0	1	1799100			26846	5565	15312	15313	33456	33456					0.057324537349586535
LSGSKRYLSDL	11	Unmodified	_LSGSKRYLSDL_					0	0	0		nc|ENSG00000162398|Q3ZCV2-2|CIMAP2;ENSG00000162398|ENST00000371273|LEXM	nc|ENSG00000162398|Q3ZCV2-2|CIMAP2	nc|ENSG00000162398|Q3ZCV2-2|CIMAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8406372070312	2	619.840602	1237.66665	-0.032526	-2.0161E-05	0.29391	0.00018218	0.26139	0.00016202	619.8406833501189	39.382	0.55109	39.475	39.226	39.777	0.09267					54	19	4	0	0	0	0.33432	1	8316	8316		23.79	3.3752	1	944380			26847	5565	15312	15313	33457	33457					0.057324537349586535
LSGSKRYLSDL	11	Unmodified	_LSGSKRYLSDL_					0	0	0		nc|ENSG00000162398|Q3ZCV2-2|CIMAP2;ENSG00000162398|ENST00000371273|LEXM	nc|ENSG00000162398|Q3ZCV2-2|CIMAP2	nc|ENSG00000162398|Q3ZCV2-2|CIMAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.56280517578125	3	413.562827	1237.66665	0.25109	0.00010384	-0.10799	-4.4662E-05	0.1431	5.918E-05	413.56270100111215	39.359	0.96209	39.459	39.128	40.09	0.099407					102	34	5	0	0	0	0.36722	2	8301	8256;8301		15.538	2.6825	1	2261500			26848	5565	15312	15313	33458;33459	33459					0.057324537349586535
LSGSPKPFSP	10	Unmodified	_LSGSPKPFSP_					0	0	0		nc|ENSG00000101040|Q9ULU4-4|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8	nc|ENSG00000101040|Q9ULU4-4|ZMYND8	nc|ENSG00000101040|Q9ULU4-4|ZMYND8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7579040527344	2	508.7742	1015.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.402	1	30.402	29.902	30.902	0								0	0	0	0.36126	1	5559	5559		10.074	0	1				26849	1660	15313	15314	33460	33460					0.026700540689603258
LSGVRVIR	8	Unmodified	_LSGVRVIR_					0	0	0		HERVH-int_dup4392|chr11:117810273-117812670:+|1.0106195284198216|0.4419619859838813|1.19|535.0|64|1|anti-sense	HERVH-int_dup4392|chr11:117810273-117812670:+|1.0106195284198216|0.4419619859838813|1.19|535.0|64|1|anti-sense	HERVH-int_dup4392|chr11:117810273-117812670:+|1.0106195284198216|0.4419619859838813|1.19|535.0|64|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.5703430175781	2	450.292894	898.571235	-0.061673	-2.7771E-05	0.3701	0.00016665	0.30843	0.00013888	450.2930895620203	31.449	0.33402	31.492	31.209	31.543	0.042366					19	11	2	0	0	0	0.34039	1	5867	5867		15.847	0	1	175500			26850	12404	15314	15315	33461	33461					0.11789190125239202
LSGVRVIR	8	Unmodified	_LSGVRVIR_					0	0	0		HERVH-int_dup4392|chr11:117810273-117812670:+|1.0106195284198216|0.4419619859838813|1.19|535.0|64|1|anti-sense	HERVH-int_dup4392|chr11:117810273-117812670:+|1.0106195284198216|0.4419619859838813|1.19|535.0|64|1|anti-sense	HERVH-int_dup4392|chr11:117810273-117812670:+|1.0106195284198216|0.4419619859838813|1.19|535.0|64|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.57037353515625	2	450.292894	898.571235	0.18306	8.243E-05	0.0083488	3.7594E-06	0.19141	8.619E-05	450.29293708093536	31.415	0.3536	31.456	31.206	31.559	0.040989					21	12	2	0	0	0	0.33988	1	5847	5847		18.146	3.3081	1	196890			26851	12404	15314	15315	33462	33462					0.11789190125239202
LSGVSQLLPK	10	Unmodified	_LSGVSQLLPK_					0	0	0		ENST00000597076.5_1_19:17881245-17885205:+|nuORF;nc|ENSG00000130475|O14526-3|FCHO1;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1	ENST00000597076.5_1_19:17881245-17885205:+|nuORF	ENST00000597076.5_1_19:17881245-17885205:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.7821044921875	2	521.318774	1040.623	0.45774	0.00023863	-0.68818	-0.00035876	-0.23043	-0.00012013	521.3183926160685	42.259	0.56575	42.35	42.067	42.633	0.091362					39	19	3	0	0	0	0.31143	1	9143	9143		17.113	7.039	1	324280			26852	3477	15315	15316	33463	33463					0.10430889028475576
LSGVSQLLPK	10	Unmodified	_LSGVSQLLPK_					0	0	0		ENST00000597076.5_1_19:17881245-17885205:+|nuORF;nc|ENSG00000130475|O14526-3|FCHO1;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1	ENST00000597076.5_1_19:17881245-17885205:+|nuORF	ENST00000597076.5_1_19:17881245-17885205:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.318774	1040.623	0.14573	7.597E-05	-0.14659	-7.6421E-05	-0.00086577	-4.5134E-07	521.3189213024214	42.367	0.45871	42.367	42.193	42.652	0	-0.010843	0.00026302	NaN	17.113	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469170			26853	3477	15315	15316							0.10430889028475576
LSGVSQLLPK	10	Unmodified	_LSGVSQLLPK_					0	0	0		ENST00000597076.5_1_19:17881245-17885205:+|nuORF;nc|ENSG00000130475|O14526-3|FCHO1;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1	ENST00000597076.5_1_19:17881245-17885205:+|nuORF	ENST00000597076.5_1_19:17881245-17885205:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	521.318774	1040.623	0.38162	0.00019895	-0.14042	-7.3205E-05	0.2412	0.00012574	521.3186799568468	42.332	0.60943	42.417	42.121	42.731	0.085197	0.038779	0.00026945	NaN	17.113	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	418380			26854	3477	15315	15316							0.10430889028475576
LSGVSSNIQR	10	Unmodified	_LSGVSSNIQR_					0	0	0		nc|ENSG00000004777|O14559-10|ARHGAP33;ENSG00000004777|ENST00000007510|ARHGAP33;nc|ENSG00000004777|O14559-11|ARHGAP33	nc|ENSG00000004777|O14559-10|ARHGAP33	nc|ENSG00000004777|O14559-10|ARHGAP33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7926025390625	2	530.790912	1059.56727	0.79434	0.00042163	2.4198	0.0012844	3.2142	0.0017061	530.7924311230969	55.052	0.50154	55.033	54.818	55.319	-0.019081					28	18	3	0	0	0	0.023567	1	13127	13127		67.838	3.8776	1	716750			26855	313	15316	15317	33464	33464					0.03987055840843823
LSGWDGGQI	9	Unmodified	_LSGWDGGQI_					0	0	0			REV__ENSG00000143819|ENST00000272167|EPHX1	REV__ENSG00000143819|ENST00000272167|EPHX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.72711181640625	2	466.727249	931.439946	-0.097542	-4.5526E-05	0.24946	0.00011643	0.15192	7.0906E-05	466.7272547709736	28.356	0.58175	28.357	28.104	28.686	0.0004673					37	20	3	0	0	0	0.21303	1	4933	4933		21.747	0	1	264320	+		26856	16203	15317	15318	33465	33465					-0.028516650333358484
LSGWDGGQI	9	Unmodified	_LSGWDGGQI_					0	0	0			REV__ENSG00000143819|ENST00000272167|EPHX1	REV__ENSG00000143819|ENST00000272167|EPHX1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	466.727249	931.439946	-0.14419	-6.73E-05	0.27046	0.00012623	0.12627	5.8933E-05	466.72729396833114	28.369	0.67435	28.365	28.14	28.815	-0.0042572	-0.017033	-3.2533E-05	NaN	21.747	40	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248020	+		26857	16203	15317	15318							-0.028516650333358484
LSGWGWISL	9	Unmodified	_LSGWGWISL_					0	0	0			REV__SNX13|p.L169Efs*10|1|0.08|ENSG00000071189|chr7:17875723-17875726|GTAA/-|frameshift_variant	REV__SNX13|p.L169Efs*10|1|0.08|ENSG00000071189|chr7:17875723-17875726|GTAA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8003234863281	2	509.77146	1017.52837	0.32933	0.00016788	-3.2798	-0.001672	-2.9505	-0.0015041	509.77008941303075	57.954	1.4656	57.937	57.337	58.803	-0.0172					96	53	3	0	0	0	0.19839	1	14176	14176		21.747	2.3076	1	987420	+		26858	13741	15318	15319	33466	33466					0.020303752771496875
LSGWRMELK	9	Unmodified	_LSGWRMELK_					0	0	0		ENST00000400590.7_2_13:21952859-21957074:-|nuORF	ENST00000400590.7_2_13:21952859-21957074:-|nuORF	ENST00000400590.7_2_13:21952859-21957074:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8400268554688	2	560.302601	1118.59065	0.4414	0.00024732	-0.47985	-0.00026886	-0.038453	-2.1545E-05	560.3020485560926	44.781	0.4667	44.85	44.627	45.093	0.068569					25	16	2	0	0	0	0.2322	1	9931	9931		14.838	0	1	122210			26859	10186	15319	15320	33467	33467					0.03609778353825277
LSGWWFSIGI	10	Unmodified	_LSGWWFSIGI_					0	0	0		nc|ENSG00000134317|Q9NZI5-2|GRHL1	nc|ENSG00000134317|Q9NZI5-2|GRHL1	nc|ENSG00000134317|Q9NZI5-2|GRHL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3057250976562	2	583.305667	1164.59678	0.42447	0.0002476	0.40793	0.00023795	0.8324	0.00048554	583.3057615383146	73.082	1.1433	73.052	72.627	73.77	-0.029297					90	41	3	0	0	0	0.31867	1	18693	18693		18.146	0	1	568450			26860	12706	15320	15321	33468	33468					0.02106619856999714
LSHDGWLD	8	Unmodified	_LSHDGWLD_					0	0	0			REV__ENST00000506165.1_1_5:139943324-139943944:-|nuORF	REV__ENST00000506165.1_1_5:139943324-139943944:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2188720703125	2	471.719424	941.424296	0.50346	0.00023749	-2.5906	-0.001222	-2.0871	-0.00098455	471.7202639686769	77.999	1.2752	78.057	77.485	78.76	0.058151					69	46	2	0	0	0	0.34218	1	20152	20152		9.3474	3.587	1	117690	+		26861	14795	15321	15322	33469	33469					-0.04875951550366153
LSHEPKVLQ	9	Unmodified	_LSHEPKVLQ_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8134155273438	2	525.800749	1049.58694	0.53094	0.00027917	-0.50873	-0.00026749	0.022208	1.1677E-05	525.8004330557266	49.75	1.1193	49.795	49.342	50.461	0.044891					114	41	4	0	0	0	0.18803	1	11606	11606		25.399	2.7412	1	3660900			26862	1286	15322	15323	33470	33470					0.06413431851638052
LSHFVAETVDW	11	Unmodified	_LSHFVAETVDW_					0	0	0			REV__nc|ENSG00000136891|Q9NXF1-2|TEX10	REV__nc|ENSG00000136891|Q9NXF1-2|TEX10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2463073730469	3	435.215427	1302.62445	0.14908	6.4884E-05	1.6208	0.00070538	1.7699	0.00077027	435.216255150393	20.31	0.47305	20.2	19.906	20.379	-0.11003					35	17	3	0	0	0	0.32909	1	2534	2534		7.4771	0	1	168980	+		26863	15836	15323	15324	33471	33471					-0.014755216734329224
LSHGNLTV	8	Unmodified	_LSHGNLTV_					0	0	0		ENST00000534656.2_1_11:118868886-118869820:+|nuORF;ENST00000524670.5_1_11:118869052-118882689:+|nuORF;ENSG00000186166|ENST00000334418|CENATAC	ENST00000534656.2_1_11:118868886-118869820:+|nuORF	ENST00000534656.2_1_11:118868886-118869820:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.5904846191406	2	420.732335	839.450116	-0.14037	-5.906E-05	-0.14885	-6.2624E-05	-0.28922	-0.00012168	420.73227463088773	26.605	0.51527	26.605	26.41	26.925	0					22	17	2	0	0	0	0.34226	1	4450	4450		10.074	2.7847	1	60273			26864	7597	15324	15325	33472	33472					0.02396942691905224
LSHGSGLLSL	10	Unmodified	_LSHGSGLLSL_					0	0	0			REV__ENST00000540534.5_1_20:62271485-62272211:-|nuORF	REV__ENST00000540534.5_1_20:62271485-62272211:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.8138427734375	2	492.279649	982.544745	0.68581	0.00033761	-0.26031	-0.00012815	0.42549	0.00020946	492.27947042171775	55.037	0.64594	55.037	54.552	55.198	0					30	23	2	0	0	0	0.23542	1	13103	13103		39.95	3.4435	1	526180	+		26865	22113	15325	15326	33473	33473					0.052774564432638726
LSHGSGLLSL	10	Unmodified	_LSHGSGLLSL_					0	0	0			REV__ENST00000540534.5_1_20:62271485-62272211:-|nuORF	REV__ENST00000540534.5_1_20:62271485-62272211:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.81365966796875	2	492.279649	982.544745	0.65529	0.00032259	-0.77238	-0.00038022	-0.11708	-5.7638E-05	492.27945335887483	54.906	0.62297	54.97	54.667	55.29	0.063202					36	22	3	0	0	0	0.23542	1	13098	13098		39.95	17.213	1	515570	+		26866	22113	15325	15326	33474	33474					0.052774564432638726
LSHGSGLLSL	10	Unmodified	_LSHGSGLLSL_					0	0	0			REV__ENST00000540534.5_1_20:62271485-62272211:-|nuORF	REV__ENST00000540534.5_1_20:62271485-62272211:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.81329345703125	2	492.279649	982.544745	0.59659	0.00029369	0.085201	4.1943E-05	0.68179	0.00033563	492.2796519376092	55.102	0.68993	55.083	54.818	55.508	-0.019077					32	25	2	0	0	0	0.23542	1	13126	13126		39.95	10.868	1	445840	+		26867	22113	15325	15326	33475	33475					0.052774564432638726
LSHISDLPA	9	Unmodified	_LSHISDLPA_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.74041748046875	2	476.758549	951.502546	0.27107	0.00012923	-1.4749	-0.00070317	-1.2038	-0.00057394	476.7583341054243	29.225	0.58565	29.237	28.974	29.56	0.012266					27	20	2	0	0	0	0.24913	1	5235	5235		7.9102	0	1	145160	+		26868	17534	15326	15327	33476	33476					0.0248548103485291
LSHLIMWAL	9	Unmodified	_LSHLIMWAL_					0	0	0			REV__FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant	REV__FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.793701171875	2	542.304613	1082.59467	0.15956	8.6528E-05	-1.9825	-0.0010751	-1.8229	-0.00098858	542.303602453198	14.221	0.3728	14.221	13.992	14.365	0					30	12	3	0	0	0	0.25417	1	619	619		8.5933	1.304	1	89314	+		26869	18550	15327	15328	33477	33477					0.05667867847546404
LSHLIMWAL	9	Unmodified	_LSHLIMWAL_					0	0	0			REV__FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant	REV__FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2831420898438	2	542.304613	1082.59467	0.59462	0.00032246	4.0949	0.0022207	4.6895	0.0025431	542.3058234761961	43.328	0.43747	43.412	43.166	43.604	0.083996					22	15	2	0	0	0	0.24913	1	9470	9470		7.9102	1.187	1	195340	+		26870	18550	15327	15328	33478	33478					0.05667867847546404
LSHLIMWAL	9	Unmodified	_LSHLIMWAL_					0	0	0			REV__FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant	REV__FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	542.304613	1082.59467	0.22859	0.00012397	-2.0996	-0.0011386	-1.871	-0.0010146	542.3035633604743	14.237	0.4478	14.17	14.007	14.455	-0.066068	0.0043633	0.00012372	NaN	8.5933	30	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72267	+		26871	18550	15327	15328							0.05667867847546404
LSHLTQHK	8	Unmodified	_LSHLTQHK_					0	0	0		ENSG00000196081|ENST00000418100|ZNF724;ENSG00000152926|ENST00000282869|ZNF117	ENSG00000196081|ENST00000418100|ZNF724	ENSG00000196081|ENST00000418100|ZNF724	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7437744140625	2	482.272158	962.529764	0.21435	0.00010338	0.62157	0.00029976	0.83592	0.00040314	482.27228516008387	20.224	0.9791	20.224	19.933	20.912	0					74	35	3	0	0	0	0.34337	1	2654	2654		5.2307	0	1	415210			26872	7819	15328	15329	33479	33479					0.04700009365888036
LSHLWVPL	8	Unmodified	_LSHLWVPL_					0	0	0			REV__ENSG00000198569|ENST00000673835|SLC34A3	REV__ENSG00000198569|ENST00000673835|SLC34A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.78436279296875	2	482.78437	963.554188	0.40592	0.00019597	0.3322	0.00016038	0.73812	0.00035635	482.78453901362064	66.168	1.5275	66.168	65.608	67.135	0					148	54	3	0	0	0	0.42758	1	16749	16749		13.508	0.97634	1	12562000	+		26873	18834	15329	15330	33480	33480					0.07095269519413705
LSHLYVGEVLL	11	Unmodified	_LSHLYVGEVLL_					0	0	0			REV__nc|ENSG00000010310|P48546-2|GIPR	REV__nc|ENSG00000010310|P48546-2|GIPR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.906494140625	3	414.907934	1241.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.404	1	40.496	39.996	40.996	0.09267								0	0	0	0.30617	1	8614	8614		17.863	2.906	1		+		26874	13413	15330	15331	33481	33481					0.09079116262751086
LSHNSLLALE	10	Unmodified	_LSHNSLLALE_					0	0	0		ENSG00000168140|ENST00000304735|VASN	ENSG00000168140|ENST00000304735|VASN	ENSG00000168140|ENST00000304735|VASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.802490234375	2	548.803488	1095.59242	0.30604	0.00016796	-0.33817	-0.00018559	-0.032124	-1.763E-05	548.803145977436	30.762	0.82254	30.79	30.394	31.216	0.027157					82	29	4	0	0	0	0.30872	1	5749	5749		19.362	0.10495	1	1249100			26875	6250	15331	15332	33482	33482					0.04845110643418593
LSHPCIFHR	9	Unmodified	_LSHPCIFHR_					0	0	0			REV__ENST00000511472.5_1_5:85913790-85915209:+|nuORF	REV__ENST00000511472.5_1_5:85913790-85915209:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.84033203125	2	555.287285	1108.56002	0.36082	0.00020036	-1.7106	-0.00094989	-1.3498	-0.00074953	555.2862117377291	32.697	0.88184	32.753	32.618	33.499	0.055309					35	31	2	0	0	0	0.25622	1	6465	6465		7.2892	0.56607	1	106900	+		26876	21792	15332	15333	33483	33483					0.010080447594418729
LSHPEAPSV	9	Unmodified	_LSHPEAPSV_					0	0	0			REV__ENSG00000179698|ENST00000323662|WDR97	REV__ENSG00000179698|ENST00000323662|WDR97	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7285461425781	2	468.742899	935.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.557	1	62.549	62.049	63.049	-0.0085526								0	0	0	0.22377	1	15430	15430		14.838	0.25658	1		+		26877	18088	15333	15334	33484	33484					0.0009290800077224048
LSHPLSHRGP	10	Unmodified	_LSHPLSHRGP_					0	0	0			REV__ENST00000608055.1_1_11:128628003-128638319:+|nuORF	REV__ENST00000608055.1_1_11:128628003-128638319:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.322509765625	2	550.801614	1099.58868	0.24653	0.00013579	-0.82631	-0.00045513	-0.57978	-0.00031934	550.8011282458352	26.285	0.18788	26.285	26.133	26.321	0					10	6	2	0	0	0	0.31889	1	4312	4312		6.2058	2.2614	1	58649	+		26878	22668	15334	15335	33485	33485					0.04286485660236394
LSHPLSHRGP	10	Unmodified	_LSHPLSHRGP_					0	0	0			REV__ENST00000608055.1_1_11:128628003-128638319:+|nuORF	REV__ENST00000608055.1_1_11:128628003-128638319:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.322265625	2	550.801614	1099.58868	0.27783	0.00015303	-1.0396	-0.0005726	-0.76175	-0.00041957	550.8008565386177	26.196	0.25285	26.157	26.037	26.29	-0.038671					12	8	2	0	0	0	0.31889	1	4318	4318		6.2058	1.8765	1	56963	+		26879	22668	15334	15335	33486	33486					0.04286485660236394
LSHPLSHRGP	10	Unmodified	_LSHPLSHRGP_					0	0	0			REV__ENST00000608055.1_1_11:128628003-128638319:+|nuORF	REV__ENST00000608055.1_1_11:128628003-128638319:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	550.801614	1099.58868	0.40902	0.00022529	-1.7028	-0.00093793	-1.2938	-0.00071264	550.8004324708767	26.221	0.22535	26.198	26.073	26.298	-0.022238	-0.015134	-0.00045591	NaN	6.2058	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61385	+		26880	22668	15334	15335							0.04286485660236394
LSHRQTTK	8	Unmodified	_LSHRQTTK_					0	0	0		ENST00000525823.1_2_11:111781393-111781609:-|nuORF	ENST00000525823.1_2_11:111781393-111781609:-|nuORF	ENST00000525823.1_2_11:111781393-111781609:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.77484130859375	2	485.775065	969.535577	0.038742	1.882E-05	-0.44352	-0.00021545	-0.40477	-0.00019663	485.7748965088685	18.944	1.2153	18.886	18.57	19.786	-0.058174					103	42	4	0	0	0	0.4419	1	2148	2148		8.5933	0.68312	1	2446800			26881	11543	15335	15336	33487	33487					0.04959107877562019
LSHSLLAVAQA	11	Unmodified	_LSHSLLAVAQA_					0	0	0		nc|ENSG00000126001|Q9BV73-2|CEP250;ENSG00000126001|ENST00000397527|CEP250	nc|ENSG00000126001|Q9BV73-2|CEP250	nc|ENSG00000126001|Q9BV73-2|CEP250	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7954711914062	2	555.319306	1108.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.04	1	116.02	115.52	116.52	-0.022316								0	0	0	0.38126	1	30074	30074		1.1933	0.23107	1				26882	3251	15336	15337	33488	33488					0.07409103397367289
LSHTKCTL	8	Unmodified	_LSHTKCTL_					0	0	0			REV__ATXN7|p.T393Pfs*6|1|0.3|ENSG00000163635|chr3:63988137-63988137|A/-|frameshift_variant;REV__ENST00000472910.5_1_7:105260689-105318420:-|nuORF	REV__ATXN7|p.T393Pfs*6|1|0.3|ENSG00000163635|chr3:63988137-63988137|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.27142333984375	2	451.741845	901.469137	0.14252	6.4384E-05	-2.6585	-0.0012009	-2.5159	-0.0011366	451.73980307561567	49.403	0.53501	49.448	49.266	49.801	0.044891					20	19	2	0	0	0	0.31088	1	11406	11406		15.847	0	1	169450	+		26883	13120;16356	15337	15338	33489	33489					0.014461559913115707
LSHTNKKKGF	10	Unmodified	_LSHTNKKKGF_					0	0	0			REV__nc|ENSG00000120669|Q9NX45-2|SOHLH2	REV__nc|ENSG00000120669|Q9NX45-2|SOHLH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8005981445312	2	580.332747	1158.65094	0.29463	0.00017098	3.384	0.0019638	3.6786	0.0021348	580.3345501040668	65.454	0.40598	65.443	65.288	65.694	-0.011337					21	14	2	0	0	0	0.3156	1	16274	16274		10.824	2.9138	1	139550	+		26884	15091	15338	15339	33490	33490					0.07796212008565817
LSHTPAPRN	9	Unmodified	_LSHTPAPRN_					0	0	0		ENST00000591714.5_2_17:42188438-42188564:-|nuORF	ENST00000591714.5_2_17:42188438-42188564:-|nuORF	ENST00000591714.5_2_17:42188438-42188564:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7903137207031	2	496.76724	991.519927	0.096721	4.8048E-05	-0.053684	-2.6669E-05	0.043037	2.1379E-05	496.76726558395	18.971	0.60292	18.913	18.539	19.142	-0.058174					34	20	3	0	0	0	0.26068	1	2017	2017		1.3295	0	1	88340			26885	12189	15339	15340	33491	33491					0.023828213605156634
LSHYEFCVVI	10	Unmodified	_LSHYEFCVVI_					0	0	0			REV__ENST00000441159.6_1_7:143425882-143426038:+|nuORF	REV__ENST00000441159.6_1_7:143425882-143426038:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.22064208984375	3	403.870603	1208.58998	-0.050775	-2.0506E-05	2.5057	0.001012	2.4549	0.00099148	403.87180458895875	46.079	0.58183	46.144	45.727	46.309	0.065048					38	20	3	0	0	0	0.31629	1	10305	10305		5.7834	0	1	411640	+		26886	21049	15340	15341	33492	33492					-0.005970610858867076
LSHYLGYRINR	11	Unmodified	_LSHYLGYRINR_					0	0	0			REV__ENSG00000179163|ENST00000374479|FUCA1	REV__ENSG00000179163|ENST00000374479|FUCA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7822570800781	3	464.589599	1390.74697	0.082327	3.8248E-05	-1.7188	-0.00079852	-1.6364	-0.00076027	464.5887592921281	45.059	0.32951	45.059	44.909	45.238	0					13	11	2	0	0	0	0.32683	1	10068	10068		11.631	5.397	1	169630	+		26887	18063	15341	15342	33493	33493					0.06722359848663473
LSHYLGYRINR	11	Unmodified	_LSHYLGYRINR_					0	0	0			REV__ENSG00000179163|ENST00000374479|FUCA1	REV__ENSG00000179163|ENST00000374479|FUCA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7823791503906	3	464.589599	1390.74697	0.10457	4.8584E-05	-2.2972	-0.0010672	-2.1926	-0.0010187	464.58857331173857	44.823	0.26784	44.892	44.711	44.979	0.068569					14	9	2	0	0	0	0.32774	1	9954	9954		9.7643	5.0483	1	151110	+		26888	18063	15341	15342	33494	33494					0.06722359848663473
LSIARLFQKR	10	Unmodified	_LSIARLFQKR_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.57855224609375	3	411.259302	1230.75608	0.2195	9.027E-05	-0.78879	-0.0003244	-0.56929	-0.00023413	411.2588620563255	30.008	0.42858	30.02	29.774	30.202	0.012266					21	14	2	0	0	0	0.31969	1	5372	5372		5.7834	1.9071	1	58228			26889	5384	15342	15343	33495	33495					0.14992753204978726
LSIDVRQK	8	Unmodified	_LSIDVRQK_					0	0	0		nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442-3|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF;nc|ENSG00000166473|Q7Z442-6|PKD1L2;nc|ENSG00000166473|Q7Z442-4|PKD1L2;ENST00000299598.11_1_16:81199358-81222588:-|nuORF	nc|ENSG00000166473|Q7Z442|PKD1L2	nc|ENSG00000166473|Q7Z442|PKD1L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.26708984375	2	479.787641	957.56073	0.32166	0.00015433	-0.41895	-0.000201	-0.097282	-4.6675E-05	479.7876617521462	23.635	0.40138	23.596	23.476	23.878	-0.038927					15	13	2	0	0	0	0.34039	1	3496	3496		15.847	0	1	53280			26890	12817	15343	15344	33496	33496					0.08025162680144149
LSIERRKK	8	Unmodified	_LSIERRKK_					0	0	0		ENSG00000152785|ENST00000282701|BMP3	ENSG00000152785|ENST00000282701|BMP3	ENSG00000152785|ENST00000282701|BMP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7597045898438	2	515.330008	1028.64546	-0.16589	-8.5488E-05	-3.9807	-0.0020514	-4.1466	-0.0021369	515.3277803989937	13.752	0.14548	13.686	13.602	13.747	-0.066068					7	4	2	0	0	0	0.34414	1	498	498		2.0598	0.21551	1	14471			26891	5041	15344	15345	33497	33497					0.1322853321673847
LSIHDRLHTGP	11	Unmodified	_LSIHDRLHTGP_					0	0	0		ENST00000572919.1_3_17:3495643-3512676:-|nuORF	ENST00000572919.1_3_17:3495643-3512676:-|nuORF	ENST00000572919.1_3_17:3495643-3512676:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.9273681640625	3	415.894799	1244.66257	0.24912	0.00010361	1.7526	0.0007289	2.0017	0.00083251	415.89541447287996	29.036	1.2716	29.048	28.645	29.917	0.012264					75	43	3	0	0	0	0.33094	1	5109	5109		4.7159	1.1289	1	247020			26892	12030	15345	15346	33498	33498					0.05002409031862953
LSIHRQHSKI	10	Unmodified	_LSIHRQHSKI_					0	0	0		ENST00000493432.5_1_3:146234949-146251295:-|nuORF;ENST00000490745.5_1_3:146243371-146251295:-|nuORF;ENST00000489775.5_1_3:146239586-146251325:-|nuORF;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF	ENST00000493432.5_1_3:146234949-146251295:-|nuORF	ENST00000493432.5_1_3:146234949-146251295:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.9067687988281	3	406.907039	1217.69929	0.031189	1.2691E-05	-0.30633	-0.00012465	-0.27515	-0.00011196	406.90682095807426	36.126	0.47829	36.126	35.907	36.385	0					39	17	3	0	0	0	0.31473	1	7332	7332		3.5871	0	1	498140			26893	10973	15346	15347	33499	33499					0.0991470564847532
LSIKKFLLRWY	11	Unmodified	_LSIKKFLLRWY_					0	0	0			REV__ENSG00000213551|ENST00000372950|DNAJC9	REV__ENSG00000213551|ENST00000372950|DNAJC9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2745361328125	3	489.634257	1465.88094	0.43864	0.00021477	0.52894	0.00025899	0.96757	0.00047376	489.63526575150155	49.085	0.76978	49.085	48.856	49.626	0					78	27	5	0	0	0	0.33287	1	11365	11365		1.3296	0.21989	1	472980	+		26894	19039	15347	15348	33500	33500					0.16663625621504252
LSIKRWSL	8	Unmodified	_LSIKRWSL_					0	0	0		ENST00000529611.5_1_11:82985776-82989818:-|nuORF	ENST00000529611.5_1_11:82985776-82989818:-|nuORF	ENST00000529611.5_1_11:82985776-82989818:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2647705078125	2	501.808377	1001.6022	0.43207	0.00021682	3.8103	0.0019121	4.2424	0.0021289	501.8103111606763	87.777	0.09906	87.774	87.713	87.812	-0.0028381					6	4	2	0	0	0	0.34226	1	23134	23134		10.074	2.1638	1	50999			26895	11603	15348	15349	33501	33501					0.10146343439475913
LSILIPRAL	9	Unmodified	_LSILIPRAL_					0	0	0		ENST00000580676.1_1_17:26905530-26906263:-|nuORF	ENST00000580676.1_1_17:26905530-26906263:-|nuORF	ENST00000580676.1_1_17:26905530-26906263:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7822570800781	2	498.334227	994.653902	0.45044	0.00022447	-0.15165	-7.5574E-05	0.29879	0.0001489	498.3341262923834	75.588	0.75569	75.557	75.207	75.962	-0.031487					42	27	2	0	0	0	0.25323	1	19381	19381		3.2813	0	1	176150			26896	12077	15349	15350	33502	33502					0.15636087133361798
LSILRPMR	8	Unmodified	_LSILRPMR_					0	0	0		ENST00000217074.8_1_20:43545412-43545481:+|nuORF	ENST00000217074.8_1_20:43545412-43545481:+|nuORF	ENST00000217074.8_1_20:43545412-43545481:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.80133056640625	2	493.302404	984.590256	0.37161	0.00018332	0.79157	0.00039048	1.1632	0.0005738	493.30297291845596	28.804	0.28373	28.804	28.64	28.924	0					17	9	2	0	0	0	0.34337	1	5076	5076		5.2307	0.47466	1	120450			26897	8820	15350	15351	33503	33503					0.09734403424624816
LSILSALHF	9	Unmodified	_LSILSALHF_					0	0	0			REV__ENST00000435088.1_1_10:71060267-71060456:-|nuORF	REV__ENST00000435088.1_1_10:71060267-71060456:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2362976074219	2	500.794935	999.575317	0.41856	0.00020961	-4.0686	-0.0020375	-3.65	-0.0018279	501.2930320695339	66.4	0.24554	66.483	66.354	66.6	0.083832					13	8	2	0	0	0	0.23783	1	16619	16619		18.135	2.2878	1	71730	+		26898	20991	15351	15352	33504	33504					0.07551234828281395
LSIMRKRPMHF	11	Unmodified	_LSIMRKRPMHF_					0	0	0			REV__ENST00000547226.5_1_12:56711395-56716647:-|nuORF	REV__ENST00000547226.5_1_12:56711395-56716647:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.792236328125	3	472.596931	1414.76896	-0.16275	-7.6917E-05	0.13562	6.4091E-05	-0.027138	-1.2825E-05	472.59669106564064	27.67	0.7133	27.67	27.294	28.008	0					50	24	4	0	0	0	0.33236	1	4725	4725		4.4062	0	1	136710	+		26899	15744	15352	15353	33505	33505					0.0781712500120193
LSIRPLSYL	9	Unmodified	_LSIRPLSYL_					0	0	0		ENST00000587755.1_1_18:56563722-56585517:+|nuORF	ENST00000587755.1_1_18:56563722-56585517:+|nuORF	ENST00000587755.1_1_18:56563722-56585517:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3217163085938	2	531.321317	1060.62808	0.57626	0.00030618	0.16613	8.8271E-05	0.74239	0.00039445	531.3213542545396	68.778	1.2648	68.778	68.408	69.673	0					106	45	4	0	0	0	0.11461	1	17373	17373		36.127	1.195	1	3348700			26900	12133	15353	15354	33506	33506					0.1001919289108173
LSISTSYNI	9	Unmodified	_LSISTSYNI_					0	0	0		chr2:34696396-34713579|307|49.86|0.04|10.24|+|0|TE_info:HERVH-int,HERVH-int_dup499,ERV1,LTR,donor,+,34694923,34696396|None,LINC01320|4;chr2:34696396-34710452|208|10.32|0.01|10.83|+|0|TE_info:HERVH-int,HERVH-int_dup499,ERV1,LTR,donor,+,34694923,34696396|None,LINC01320|4	chr2:34696396-34713579|307|49.86|0.04|10.24|+|0|TE_info:HERVH-int,HERVH-int_dup499,ERV1,LTR,donor,+,34694923,34696396|None,LINC01320|4	chr2:34696396-34713579|307|49.86|0.04|10.24|+|0|TE_info:HERVH-int,HERVH-int_dup499,ERV1,LTR,donor,+,34694923,34696396|None,LINC01320|4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.24017333984375	2	499.263665	996.512776	0.54348	0.00027134	-1.0887	-0.00054355	-0.54522	-0.00027221	499.26363641046464	39.914	0.13435	40.007	39.917	40.051	0.09267					6	4	2	0	0	0	0.25202	1	8471	8471		3.5965	0	1	30713			26901	150	15354	15355	33507	33507					0.014380439694264169
LSITQFQFK	9	Unmodified	_LSITQFQFK_					0	0	0			REV__THE1D-int_dup324|chr2:208859014-208859767:+|2.4653422611636326|0.1480688773718127|4.06|526.0|41|3|anti-sense	REV__THE1D-int_dup324|chr2:208859014-208859767:+|2.4653422611636326|0.1480688773718127|4.06|526.0|41|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2969360351562	2	556.310949	1110.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.11	1	101.11	100.61	101.61	0								0	0	0	0.2489	1	26971	26971		6.7232	0.99131	1		+		26902	23330	15355	15356	33508	33508					0.05646602511410492
LSITSKVQELQ	11	Unmodified	_LSITSKVQELQ_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.356201171875	2	623.356085	1244.69762	0.09095	5.6694E-05	-0.39956	-0.00024907	-0.30861	-0.00019237	623.3558210736211	46.253	0.69969	46.253	46.003	46.703	0					55	25	3	0	0	0	0.011519	1	10399	10399		66.457	4.8548	1	1346600			26903	3288	15356	15357	33509	33509					0.08505607049187347
LSIVWKVPK	9	Unmodified	_LSIVWKVPK_					0	0	0			REV__nc|ENSG00000106771|Q9H330-3|TMEM245	REV__nc|ENSG00000106771|Q9H330-3|TMEM245	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.2671508789062	2	535.342052	1068.66955	0.39145	0.00020956	1.9271	0.0010317	2.3186	0.0012412	535.3441534084157	38.309	0.87589	38.4	37.959	38.834	0.090881					93	31	4	0	0	0	0.25526	1	8080	8080		4.3292	2.2695	1	509710	+		26904	14534	15357	15358	33510	33510					0.13796373650416172
LSIVWKVPK	9	Unmodified	_LSIVWKVPK_					0	0	0			REV__nc|ENSG00000106771|Q9H330-3|TMEM245	REV__nc|ENSG00000106771|Q9H330-3|TMEM245	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	535.342052	1068.66955	0.46777	0.00025042	2.3607	0.0012638	2.8285	0.0015142	535.3441430844098	38.306	0.78048	38.403	37.953	38.733	0.097527	0.016059	-0.00011897	NaN	7.2892	86	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	612170	+		26905	14534	15357	15358							0.13796373650416172
LSKALAKLPWL	11	Unmodified	_LSKALAKLPWL_					0	0	0			REV__ENST00000498008.5_1_1:46809037-46809295:+|nuORF	REV__ENST00000498008.5_1_1:46809037-46809295:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.541748046875	3	413.932303	1238.77508	0.39162	0.00016211	1.2212	0.00050548	1.6128	0.00066758	414.26719819033224	42.006	0.8232	42.097	41.784	42.607	0.091362					56	28	3	0	0	0	0.33303	1	9167	9167		0.36667	0	1	746090	+		26906	21691	15358	15359	33511	33511					0.16524289776043588
LSKAPCGR	8	Unmodified	_LSKAPCGR_					0	0	0		ENST00000324856.11_1_1:27101183-27101231:+|nuORF	ENST00000324856.11_1_1:27101183-27101231:+|nuORF	ENST00000324856.11_1_1:27101183-27101231:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.54852294921875	2	416.228905	830.443257	-0.03649	-1.5188E-05	0.9275	0.00038605	0.89101	0.00037087	416.2272518073045	15.645	0.27544	15.581	15.424	15.7	-0.064413					10	8	2	0	0	0	0.34337	1	1048	1048		5.2307	0	1	5812.8			26907	9405	15359	15360	33512	33512					0.021253065396763304
LSKCIWSIS	9	Unmodified	_LSKCIWSIS_					0	0	0			REV__ENST00000495484.5_1_10:55616965-56560779:-|nuORF	REV__ENST00000495484.5_1_10:55616965-56560779:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.7509765625	2	518.778428	1035.5423	0.27211	0.00014117	1.7733	0.00091995	2.0454	0.0010611	518.7792689444537	18.232	0.45946	18.232	17.96	18.419	0					38	15	3	0	0	0	0.23784	1	1855	1855		13.906	2.2658	1	423240	+		26908	21661	15360	15361	33513	33513					0.02595284713925139
LSKCRWIF	8	Unmodified	_LSKCRWIF_					0	0	0		ENST00000317757.7_2_3:190326909-190338074:+|nuORF	ENST00000317757.7_2_3:190326909-190338074:+|nuORF	ENST00000317757.7_2_3:190326909-190338074:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2658081054688	2	526.78913	1051.56371	0.44768	0.00023583	2.0245	0.0010665	2.4722	0.0013023	526.7901974776908	40.985	0.76558	41.075	40.691	41.456	0.090252					33	28	2	0	0	0	0.34092	1	8901	8901		13.508	3.434	1	342090			26909	9364	15361	15362	33514	33514					0.039987145332816
LSKDPLHLKQA	11	Unmodified	_LSKDPLHLKQA_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.K6712Vfs*24|1|0.16|ENSG00000175820|chr13:102730542-102730564|CTGAAAGAACTTGAGTATCTTTC/-|frameshift_variant;CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant;CCDC168|p.S4488Ifs*3|1|0.07|ENSG00000175820|chr13:102737235-102737236|-/T|frameshift_variant;CCDC168|p.S4487Tfs*16|1|0.05|ENSG00000175820|chr13:102737237-102737238|-/AGGGAAAATAGCACATACAAAGTCTTTTGGGG|frameshift_variant	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.3668823242188	2	625.366787	1248.71902	0.060396	3.7769E-05	-0.63224	-0.00039538	-0.57185	-0.00035761	625.3662165678498	90.972	0.53249	91.062	90.827	91.359	0.090668					100	37	3	0	0	0	0.46554	1	24075	24075		2.9952	0	1	2824100			26910	6886	15362	15363	33515	33515					0.10461036868559859
LSKEELIR	8	Unmodified	_LSKEELIR_					0	0	0		nc|ENSG00000182934|P08240-2|SRPRA;ENSG00000182934|ENST00000332118|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	nc|ENSG00000182934|P08240-2|SRPRA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.80340576171875	2	494.295299	986.576045	0.32603	0.00016115	0.48791	0.00024117	0.81393	0.00040232	494.2954072364943	27.116	0.25492	27.105	26.958	27.213	-0.01156					9	8	2	0	0	0	0.34167	1	4569	4569		11.64	3.047	1	49110			26911	7334	15363	15364	33516	33516					0.08222029477326487
LSKENVDEVCK	11	Unmodified	_LSKENVDEVCK_					0	0	0		ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.227783203125	3	421.879827	1262.61765	0.12575	5.3051E-05	0.64644	0.00027272	0.77219	0.00032577	421.8800320490873	44.72	0.16087	44.789	44.682	44.843	0.068569					6	5	2	0	0	0	0.33169	1	9933	9933		3.8459	1.3474	1	41508			26912	5229	15364	15365	33517	33517					-0.003152026163206756
LSKGRPLV	8	Unmodified	_LSKGRPLV_					0	0	0			REV__nc|ENSG00000197114|Q8N5A5-4|ZGPAT	REV__nc|ENSG00000197114|Q8N5A5-4|ZGPAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8822021484375	2	435.281995	868.549437	0.026247	1.1425E-05	-0.25059	-0.00010908	-0.22435	-9.7654E-05	435.28178417892633	23.789	0.57544	23.75	23.506	24.081	-0.038927					32	19	2	0	0	0	0.34313	1	3512	3512		6.7232	0	1	120840	+		26913	18710	15365	15366	33518	33518					0.10990385376658196
LSKHESEYN	9	Unmodified	_LSKHESEYN_					0	0	0		nc|ENSG00000166342|Q8TDF5-2|NETO1;ENSG00000166342|ENST00000327305|NETO1	nc|ENSG00000166342|Q8TDF5-2|NETO1	nc|ENSG00000166342|Q8TDF5-2|NETO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.7589721679688	2	553.759278	1105.504	0.27728	0.00015355	-0.61737	-0.00034187	-0.34009	-0.00018833	553.7589026871191	26.603	0.43	26.564	26.316	26.746	-0.038671					23	14	2	0	0	0	0.2719	1	4401	4401		13.042	1.4022	1	179660			26914	6064	15366	15367	33519	33519					-0.04452929667036187
LSKHESEYN	9	Unmodified	_LSKHESEYN_					0	0	0		nc|ENSG00000166342|Q8TDF5-2|NETO1;ENSG00000166342|ENST00000327305|NETO1	nc|ENSG00000166342|Q8TDF5-2|NETO1	nc|ENSG00000166342|Q8TDF5-2|NETO1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.759278	1105.504	0.23232	0.00012865	-0.31757	-0.00017585	-0.085249	-4.7208E-05	553.7591084222931	26.526	0.43822	26.526	26.321	26.759	0	-0.02883	0.00025042	NaN	13.042	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139530			26915	6064	15366	15367							-0.04452929667036187
LSKHESEYN	9	Unmodified	_LSKHESEYN_					0	0	0		nc|ENSG00000166342|Q8TDF5-2|NETO1;ENSG00000166342|ENST00000327305|NETO1	nc|ENSG00000166342|Q8TDF5-2|NETO1	nc|ENSG00000166342|Q8TDF5-2|NETO1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	553.759278	1105.504	0.4646	0.00025728	-0.73781	-0.00040857	-0.2732	-0.00015129	553.7588320662151	26.597	0.37178	26.575	26.439	26.811	-0.022238	0.019852	-0.000215	NaN	13.042	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175650			26916	6064	15366	15367							-0.04452929667036187
LSKIALLLF	9	Unmodified	_LSKIALLLF_					0	0	0			REV__nc|ENSG00000170340|Q9NY97-2|B3GNT2	REV__nc|ENSG00000170340|Q9NY97-2|B3GNT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7749938964844	2	509.338978	1016.6634	0.37143	0.00018918	1.2264	0.00062467	1.5979	0.00081385	509.8409537089426	66.318	0.13918	66.402	66.354	66.494	0.083832					5	4	2	0	0	0	0.25417	1	16611	16611		4.756	0	1	62347	+		26917	17573	15367	15368	33520	33520					0.1557385541890426
LSKIETLTL	9	Unmodified	_LSKIETLTL_					0	0	0		ENSG00000180535|ENST00000609256|BHLHA15	ENSG00000180535|ENST00000609256|BHLHA15	ENSG00000180535|ENST00000609256|BHLHA15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.302978515625	2	509.313158	1016.61176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.601	1	87.595	87.095	88.095	-0.0056229								0	0	0	0.21726	1	23090	23090		16.942	0	1				26918	7192	15368	15369	33521	33521					0.10412066934327413
LSKIFCFL	8	Unmodified	_LSKIFCFL_					0	0	0			REV__ENST00000377921.7_1_10:16634938-16635046:-|nuORF	REV__ENST00000377921.7_1_10:16634938-16635046:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.77471923828125	2	485.775157	969.53576	0.052075	2.5297E-05	-0.6558	-0.00031857	-0.60372	-0.00029327	485.7749195960147	18.818	1.2329	18.818	18.535	19.768	0					117	43	5	0	0	0	0.43302	1	2169	2169		11.64	0	1	2132500	+		26919	20513	15369	15370	33522	33522					0.049773915531886814
LSKIRAQLQ	9	Unmodified	_LSKIRAQLQ_					0	0	0			REV__ENSG00000143375|ENST00000271636|CGN	REV__ENSG00000143375|ENST00000271636|CGN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7930908203125	2	528.82984	1055.64513	0.57516	0.00030416	0.84235	0.00044546	1.4175	0.00074962	528.8302947451265	37.287	0.32371	37.38	37.275	37.599	0.093018					16	11	2	0	0	0	0.2322	1	7689	7689		14.838	7.549	1	228340	+		26920	16170	15370	15371	33523	33523					0.11953113496883816
LSKKAAEL	8	Unmodified	_LSKKAAEL_					0	0	0			REV__SMC1A|p.K734Nfs*8|1|0.31|ENSG00000072501|chrX:53403888-53403888|T/-|frameshift_variant	REV__SMC1A|p.K734Nfs*8|1|0.31|ENSG00000072501|chrX:53403888-53403888|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.9605407714844	2	430.26601	858.517468	0.15012	6.4593E-05	-0.12873	-5.5386E-05	0.021398	9.2067E-06	430.2659237072644	36.051	0.51493	36.137	35.818	36.333	0.086246					30	18	2	0	0	0	0.32778	1	7193	7193		14.582	0	1	370060	+		26921	13761	15371	15372	33524	33524					0.08254972902830104
LSKKADAV	8	Unmodified	_LSKKADAV_					0	0	0			REV__ENST00000379452.3_1_3:32794544-32794889:+|nuORF	REV__ENST00000379452.3_1_3:32794544-32794889:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.22784423828125	2	416.25036	830.486168	0.29513	0.00012285	-0.84593	-0.00035212	-0.55079	-0.00022927	416.24988533848756	30.127	0.76108	30.155	29.762	30.523	0.027946					51	26	3	0	0	0	0.34367	1	5400	5400		4.3292	0	1	385780	+		26922	17235	15372	15373	33525	33525					0.06414399868742748
LSKKNPGVVA	10	Unmodified	_LSKKNPGVVA_					0	0	0		nc|ENSG00000165566|Q8N7J2-2|AMER2;ENSG00000165566|ENST00000515384|AMER2	nc|ENSG00000165566|Q8N7J2-2|AMER2	nc|ENSG00000165566|Q8N7J2-2|AMER2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.30078125	2	506.811116	1011.60768	0.25747	0.00013049	0.14359	7.2773E-05	0.40106	0.00020326	506.81125845862124	47.2	0.9694	47.252	46.929	47.899	0.052574					102	35	4	0	0	0	0.34795	1	10638	10638		13.042	1.4022	1	15996000			26923	5977	15373	15374	33526	33526					0.1023402223128187
LSKKQKHRQSP	11	Unmodified	_LSKKQKHRQSP_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.63580322265625	3	446.265115	1335.77352	0.12425	5.5448E-05	-0.26831	-0.00011974	-0.14407	-6.4291E-05	446.2652161034791	33.213	0.36499	33.213	33.119	33.484	0					17	12	2	0	0	0	0.3331	1	6480	6480		2.2527	0	1	109890			26924	1003	15374	15375	33527	33527					0.11906048739979269
LSKLHANGKIL	11	Unmodified	_LSKLHANGKIL_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3590087890625	2	597.371872	1192.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.984	1	99.984	99.484	100.48	0								0	0	0	0.37501	1	26731	26731		2.7352	1.2533	1				26925	4660	15375	15376	33528	33528					0.14053644593786885
LSKLMALSL	9	Unmodified	_LSKLMALSL_					0	0	0			REV__ECHDC3|p.S210Lfs*34|1|0.3|ENSG00000134463|chr10:11763258-11763258|T/-|frameshift_variant	REV__ECHDC3|p.S210Lfs*34|1|0.3|ENSG00000134463|chr10:11763258-11763258|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.28533935546875	2	488.298996	974.583439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.465	1	87.465	86.965	87.965	0								0	0	0	0.2575	1	23064	23064		3.9444	0	1		+		26926	13307	15376	15377	33529	33529					0.09513045753396909
LSKLSSQIQE	10	Unmodified	_LSKLSSQIQE_					0	0	0		nc|ENSG00000146054|Q9C029-3|TRIM7;nc|ENSG00000146054|Q9C029-4|TRIM7;ENSG00000146054|ENST00000274773|TRIM7	nc|ENSG00000146054|Q9C029-3|TRIM7	nc|ENSG00000146054|Q9C029-3|TRIM7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.8235473632812	2	566.814053	1131.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.442	1	51.489	50.989	51.989	0.046574								0	0	0	0.21122	1	12004	12004		38.615	1.5401	1				26927	4685	15377	15378	33530	33530					0.053010759522976514
LSKMPKPK	8	Unmodified	_LSKMPKPK_					0	0	0		ENST00000326298.8_1_6:99991433-99997239:-|nuORF;nc|ENSG00000112237|P24863-2|CCNC;ENSG00000112237|ENST00000520429|CCNC	ENST00000326298.8_1_6:99991433-99997239:-|nuORF	ENST00000326298.8_1_6:99991433-99997239:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7860107421875	2	464.786056	927.557558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.451	1	34.451	33.951	34.951	0								0	0	0	0.36336	1	6794	6794		8.5933	2.8329	1				26928	2423	15378	15379	33531	33531					0.09088196301775042
LSKNEERFKL	10	Unmodified	_LSKNEERFKL_					0	0	0		nc|ENSG00000082512|O00463-3|TRAF5;ENSG00000082512|ENST00000261464|TRAF5;nc|ENSG00000082512|O00463-2|TRAF5	nc|ENSG00000082512|O00463-3|TRAF5	nc|ENSG00000082512|O00463-3|TRAF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.9057922363281	3	421.906705	1262.69829	-0.03141	-1.3252E-05	-1.1222	-0.00047345	-1.1536	-0.0004867	421.905937749041	17.601	0.76148	17.541	17.241	18.002	-0.060429					81	26	5	0	0	0	0.38745	1	1675	1675		5.7834	0	1	192190			26929	1203	15379	15380	33532	33532					0.07744446488891299
LSKNEERFKL	10	Unmodified	_LSKNEERFKL_					0	0	0		nc|ENSG00000082512|O00463-3|TRAF5;ENSG00000082512|ENST00000261464|TRAF5;nc|ENSG00000082512|O00463-2|TRAF5	nc|ENSG00000082512|O00463-3|TRAF5	nc|ENSG00000082512|O00463-3|TRAF5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	421.906705	1262.69829	-0.1913	-8.0711E-05	-1.6862	-0.00071142	-1.8775	-0.00079213	421.90598528335363	17.685	0.63453	17.567	17.323	17.957	-0.11739	0.054802	-0.00035472	NaN	5.7834	39	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179910			26930	1203	15379	15380							0.07744446488891299
LSKPAHLTF	9	Unmodified	_LSKPAHLTF_					0	0	0		MLT2B3_dup487|chr2:208542565-208543130:-|1.8246380979611807|0.059098090958753|4.95|523.0|33|3|anti-sense	MLT2B3_dup487|chr2:208542565-208543130:-|1.8246380979611807|0.059098090958753|4.95|523.0|33|3|anti-sense	MLT2B3_dup487|chr2:208542565-208543130:-|1.8246380979611807|0.059098090958753|4.95|523.0|33|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2846374511719	2	507.292559	1012.57057	-0.4822	-0.00024461	2.2156	0.001124	1.7334	0.00087935	507.29341975566336	34.447	0.33616	34.447	34.336	34.672	0					27	11	4	0	0	0	0.24688	1	6787	6787		14.838	0	1	85382			26931	12545	15380	15381	33533	33533					0.06478350685506484
LSKQLNIAYDV	11	Unmodified	_LSKQLNIAYDV_					0	0	0		ENSG00000126353|ENST00000246657|CCR7	ENSG00000126353|ENST00000246657|CCR7	ENSG00000126353|ENST00000246657|CCR7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.24591064453125	3	421.902961	1262.68705	-0.015298	-6.4544E-06	3.7853	0.001597	3.77	0.0015906	422.2384006095311	19.427	0.65627	19.372	19.048	19.705	-0.055693					37	22	2	0	0	0	0.43809	1	2324	2324		6.2344	1.1868	1	69170			26932	3268	15381	15382	33534	33534					0.06621624394711034
LSKREDSRFS	10	Unmodified	_LSKREDSRFS_					0	0	0			REV__ENST00000557038.5_2_14:39734598-39748673:+|nuORF	REV__ENST00000557038.5_2_14:39734598-39748673:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5755310058594	3	408.882559	1223.62585	0.076543	3.1297E-05	-0.33158	-0.00013558	-0.25504	-0.00010428	409.2166586776825	19.774	0.52587	19.658	19.514	20.04	-0.11592					21	17	2	0	0	0	0.32106	1	2367	2367		2.8433	0.21205	1	36279	+		26933	22267	15382	15383	33535	33535					0.022981124153147903
LSKRRTERRMR	11	Unmodified	_LSKRRTERRMR_					0	0	0		ENST00000593605.1_3_19:40561332-40561410:-|nuORF	ENST00000593605.1_3_19:40561332-40561410:-|nuORF	ENST00000593605.1_3_19:40561332-40561410:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.77435302734375	3	496.95992	1487.85793	0.40766	0.00020259	-0.88167	-0.00043815	-0.47401	-0.00023556	496.95947909024693	29.064	0.58543	29.076	28.858	29.443	0.012266					26	20	2	0	0	0	0.33347	1	5252	5252		0.45452	0.45452	1	130280			26934	12210	15383	15384	33536	33536					0.1335167628506042
LSKRSEKIKH	10	Unmodified	_LSKRSEKIKH_					0	0	0			REV__ENSG00000164116|ENST00000506455|GUCY1A1	REV__ENSG00000164116|ENST00000506455|GUCY1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2505798339844	3	409.250695	1224.73025	-0.36298	-0.00014855	0.20387	8.3433E-05	-0.15911	-6.5117E-05	409.25080072393337	14.611	0.7057	14.611	14.448	15.154	0					62	24	4	0	0	0	0.38745	1	779	779		5.7834	0	1	306650	+		26935	17127	15384	15385	33537	33537					0.12687858962704013
LSKRSEKIKH	10	Unmodified	_LSKRSEKIKH_					0	0	0			REV__ENSG00000164116|ENST00000506455|GUCY1A1	REV__ENSG00000164116|ENST00000506455|GUCY1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.25067138671875	3	409.250695	1224.73025	-0.18334	-7.5032E-05	0.15553	6.365E-05	-0.027813	-1.1382E-05	409.25075622917683	14.774	0.61897	14.669	14.453	15.072	-0.10522					59	21	4	0	0	0	0.38745	1	831	831		5.7834	0	1	347210	+		26936	17127	15384	15385	33538	33538					0.12687858962704013
LSKRSEKIKH	10	Unmodified	_LSKRSEKIKH_					0	0	0			REV__ENSG00000164116|ENST00000506455|GUCY1A1	REV__ENSG00000164116|ENST00000506455|GUCY1A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	409.250695	1224.73025	-0.18334	-7.5032E-05	0.15553	6.365E-05	-0.027813	-1.1382E-05	409.25075622917683	14.774	0.61897	14.669	14.453	15.072	-0.10522	3.2752E-05	2.7107E-05	NaN	5.7834	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347210	+		26937	17127	15384	15385							0.12687858962704013
LSKRVHIK	8	Unmodified	_LSKRVHIK_					0	0	0			REV__nc|ENSG00000163071|Q8TC71-2|SPATA18	REV__nc|ENSG00000163071|Q8TC71-2|SPATA18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.8214111328125	2	490.821818	979.629084	-0.026738	-1.3124E-05	-0.269	-0.00013203	-0.29573	-0.00014515	490.82159306299894	39.218	0.58319	39.218	39.012	39.595	0					49	20	3	0	0	0	0.44389	1	8302	8302		7.9102	0	1	571120	+		26938	17032	15385	15386	33539	33539					0.1384545205064569
LSKSPCALHQ	10	Unmodified	_LSKSPCALHQ_					0	0	0			REV__FAM222A|p.A216Cfs*65|1|0.02|ENSG00000139438|chr12:109768540-109768541|-/CCAGCTCAACCAGCAGTGCCAGGCCCCGGGCGCCTGTT|frameshift_variant	REV__FAM222A|p.A216Cfs*65|1|0.02|ENSG00000139438|chr12:109768540-109768541|-/CCAGCTCAACCAGCAGTGCCAGGCCCCGGGCGCCTGTT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.811279296875	2	542.284408	1082.55426	0.73482	0.00039848	-2.3507	-0.0012748	-1.6159	-0.00087629	542.7852169678812	38.687	0.39296	38.785	38.622	39.015	0.097527					27	13	3	0	0	0	0.31237	1	8116	8116		16.149	1.3108	1	194490	+		26939	15985	15386	15387	33540	33540					0.016289014570929794
LSKSVPLLE	9	Unmodified	_LSKSVPLLE_					0	0	0			REV__nc|ENSG00000112282|Q9ULK4-4|MED23	REV__nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7872314453125	2	493.30005	984.585547	0.35415	0.0001747	0.2396	0.0001182	0.59375	0.0002929	493.3001091592559	49.269	0.96523	49.314	49.016	49.981	0.044891					94	35	4	0	0	0	0.16283	1	11418	11418		29.082	0	1	3543200	+		26940	14769	15387	15388	33541	33541					0.09263797762866943
LSKVIWEQTR	10	Unmodified	_LSKVIWEQTR_					0	0	0		ENSG00000144481|ENST00000324695|TRPM8;nc|ENSG00000144481|Q7Z2W7-4|TRPM8;ENST00000444298.5_1_2:234856214-234923253:+|nuORF	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.238525390625	3	420.575067	1258.70337	-0.070144	-2.9501E-05	0.69958	0.00029422	0.62943	0.00026472	420.5753729772882	33.767	0.44013	33.834	33.607	34.047	0.0667					21	15	2	0	0	0	0.31323	1	6517	6517		9.7643	5.0483	1	127800			26941	4590	15388	15389	33542	33542					0.08436750351506817
LSKVLEIYL	9	Unmodified	_LSKVLEIYL_					0	0	0		ENST00000479538.1_1_3:9515132-9516536:+|nuORF	ENST00000479538.1_1_3:9515132-9516536:+|nuORF	ENST00000479538.1_1_3:9515132-9516536:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.785400390625	2	539.33135	1076.64815	0.49485	0.00026689	-3.6083	-0.0019461	-3.1135	-0.0016792	539.3308351926598	70.041	0.46394	70.019	69.673	70.137	-0.022087					26	16	3	0	0	0	0.25066	1	17740	17740		7.2892	0	1	95660			26942	10992	15389	15390	33543	33543					0.11288943831027609
LSKVSPSFSAE	11	Unmodified	_LSKVSPSFSAE_					0	0	0		ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.3192749023438	2	576.300778	1150.587	0.4019	0.00023161	2.7663	0.0015942	3.1682	0.0018258	576.3014158990171	45.346	0.60014	45.346	45.146	45.746	0					53	21	3	0	0	0	0.15851	1	10083	10083		34.932	0.53034	1	553340			26943	2688	15390	15391	33544	33544					0.01773387060939058
LSKVSPSFSAE	11	Unmodified	_LSKVSPSFSAE_					0	0	0		ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.319091796875	2	576.300778	1150.587	0.45516	0.00026231	2.5479	0.0014684	3.0031	0.0017307	576.3013950011136	44.969	0.71886	45.037	44.765	45.484	0.068569					66	25	4	0	0	0	0.15851	1	10033	10033		34.932	0.53034	1	411480			26944	2688	15390	15391	33545	33545					0.01773387060939058
LSKVSPSFSAE	11	Unmodified	_LSKVSPSFSAE_					0	0	0		ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3192138671875	2	576.300778	1150.587	0.39982	0.00023042	1.871	0.0010783	2.2708	0.0013087	576.3016829353936	45.005	0.74637	45.08	44.78	45.526	0.075047					51	27	3	0	0	0	0.15851	1	10026	10026		34.932	0.53034	1	414740			26945	2688	15390	15391	33546	33546					0.01773387060939058
LSKVSQFVDE	10	Unmodified	_LSKVSQFVDE_					0	0	0			REV__ENSG00000023516|ENST00000025301|AKAP11	REV__ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3191528320312	2	576.300778	1150.587	0.39982	0.00023042	1.871	0.0010783	2.2708	0.0013087	576.3016829353936	45.005	0.74637	45.08	44.78	45.526	0.075047					51	27	3	0	0	0	0.21126	1	9979	9979		31.268	5.0002	1	414740	+		26946	13095	15391	15392	33547	33547					0.01773387060939058
LSKWDPII	8	Unmodified	_LSKWDPII_					0	0	0		ENSG00000253797|ENST00000521776|UTP14C	ENSG00000253797|ENST00000521776|UTP14C	ENSG00000253797|ENST00000521776|UTP14C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8003845214844	2	486.28166	970.548768	0.35457	0.00017242	-2.5605	-0.0012451	-2.2059	-0.0010727	486.28179577694294	72.636	0.080231	72.636	72.586	72.667	0					4	2	2	0	0	0	0.34185	1	18529	18529		10.183	0.83596	1	20533			26947	8604	15392	15393	33548	33548					0.06231545936930161
LSLAHLVTR	9	Unmodified	_LSLAHLVTR_					0	0	0		ENST00000493246.5_2_7:7681157-7712940:+|nuORF	ENST00000493246.5_2_7:7681157-7712940:+|nuORF	ENST00000493246.5_2_7:7681157-7712940:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.8214111328125	2	505.311284	1008.60801	0.3448	0.00017423	-1.1782	-0.00059536	-0.83341	-0.00042113	505.3108141983957	29.732	0.44773	29.744	29.469	29.917	0.012266					30	14	3	0	0	0	0.25202	1	5280	5280		10.824	0.75	1	129860			26948	11199	15393	15394	33549	33549					0.10405441951127159
LSLAKKKKKK	10	Unmodified	_LSLAKKKKKK_					0	0	0		ENST00000205636.3_1_3:32524128-32524239:-|nuORF	ENST00000205636.3_1_3:32524128-32524239:-|nuORF	ENST00000205636.3_1_3:32524128-32524239:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3157958984375	2	586.416083	1170.81761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.11	1	110.11	109.61	110.61	0								0	0	0	0.38209	1	28752	28752		0	0	1				26949	8802	15394	15395	33550	33550					0.23903684904257716
LSLAQIRTP	9	Unmodified	_LSLAQIRTP_					0	0	0		ENST00000496266.1_1_2:69002184-69002349:+|nuORF	ENST00000496266.1_1_2:69002184-69002349:+|nuORF	ENST00000496266.1_1_2:69002184-69002349:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2713317871094	2	499.803291	997.59203	0.38782	0.00019384	0.066219	3.3096E-05	0.45404	0.00022693	499.80421292711156	51.78	0.5773	51.827	51.647	52.224	0.046577					30	20	2	0	0	0	0.24289	1	12105	12105		18.146	1.2041	1	208310			26950	11230	15395	15396	33551	33551					0.09313735714226823
LSLAQIRTP	9	Unmodified	_LSLAQIRTP_					0	0	0		ENST00000496266.1_1_2:69002184-69002349:+|nuORF	ENST00000496266.1_1_2:69002184-69002349:+|nuORF	ENST00000496266.1_1_2:69002184-69002349:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2705993652344	2	499.803291	997.59203	0.14626	7.31E-05	-0.15474	-7.7337E-05	-0.008478	-4.2373E-06	500.3042663116663	51.994	0.59483	51.993	51.71	52.305	-0.00080872					35	21	2	0	0	0	0.25123	1	12090	12090		12.241	4.0851	1	497340			26951	11230	15395	15396	33552	33552					0.09313735714226823
LSLARPFLV	9	Unmodified	_LSLARPFLV_					0	0	0			REV__ENST00000434207.1_1_1:95603845-95603971:+|nuORF	REV__ENST00000434207.1_1_1:95603845-95603971:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8104248046875	2	508.318577	1014.6226	0.46621	0.00023699	-0.037049	-1.8833E-05	0.42917	0.00021815	508.3187250188288	63.732	1.1185	63.732	63.364	64.483	0					118	40	6	0	0	0	0.17787	1	15918	15918		26.884	2.2098	1	4626000	+		26952	20978	15396	15397	33553	33553					0.11587514099267082
LSLCFTMRRL	10	Unmodified	_LSLCFTMRRL_					0	0	0			REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.8827209472656	3	413.894866	1238.66277	0.33234	0.00013756	-0.75929	-0.00031427	-0.42695	-0.00017671	413.89454326144437	19.852	0.69273	19.736	19.433	20.126	-0.11592					69	23	4	0	0	0	0.38745	1	2341	2341		5.7834	0.48655	1	261750	+		26953	16463	15397	15398	33554	33554					0.05298369435877248
LSLDQSKSR	9	Unmodified	_LSLDQSKSR_					0	0	0			REV__ENST00000561871.1_2_15:42566485-42566566:+|nuORF	REV__ENST00000561871.1_2_15:42566485-42566566:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7975463867188	2	517.285463	1032.55637	0.11439	5.9175E-05	0.11349	5.8709E-05	0.22789	0.00011788	517.2856131929916	57.456	0.56987	57.439	57.197	57.767	-0.017197					24	20	2	0	0	0	0.29638	1	13871	13871		9.3831	0	1	488550	+		26954	22312	15398	15399	33555	33555					0.041396534665636864
LSLDRLDYLR	10	Unmodified	_LSLDRLDYLR_					0	0	0			REV__nc|ENSG00000131725|Q5JSH3-3|WDR44	REV__nc|ENSG00000131725|Q5JSH3-3|WDR44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.9061584472656	3	421.906705	1262.69829	-0.080866	-3.4118E-05	-1.0818	-0.0004564	-1.1626	-0.00049052	421.9059157688162	17.43	0.90666	17.43	16.839	17.746	0					73	31	4	0	0	0	0.3994	1	1617	1617		3.5871	0.74377	1	184080	+		26955	15531	15399	15400	33556	33556					0.07744446488868562
LSLEQLENA	9	Unmodified	_LSLEQLENA_					0	0	0			REV__ENSG00000196588|ENST00000355630|MRTFA	REV__ENSG00000196588|ENST00000355630|MRTFA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3021545410156	2	508.766571	1015.51859	0.5755	0.00029279	-1.7278	-0.00087903	-1.1523	-0.00058624	508.7654188952536	47.76	0.44016	47.76	47.468	47.908	0					27	15	3	0	0	0	0.17696	1	10830	10830		23.79	16.688	1	429640	+		26956	18666	15400	15401	33557	33557					0.011451424810843491
LSLESTWTT	9	Unmodified	_LSLESTWTT_					0	0	0			REV__ENST00000325617.9_1_4:141334179-141348766:-|nuORF	REV__ENST00000325617.9_1_4:141334179-141348766:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2887573242188	2	519.261122	1036.50769	0.6199	0.00032189	0.15362	7.9768E-05	0.77352	0.00040166	519.2611689559351	54.547	0.50698	54.61	54.327	54.834	0.063202					45	18	3	0	0	0	0.22596	1	12917	12917		21.747	21.747	1	518390	+		26957	20000	15401	15402	33558	33558					-0.00910259893203147
LSLEWKKL	8	Unmodified	_LSLEWKKL_					0	0	0		ENSG00000175664|ENST00000380473|TEX26	ENSG00000175664|ENST00000380473|TEX26	ENSG00000175664|ENST00000380473|TEX26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2945251464844	2	508.810585	1015.60662	0.013493	6.8652E-06	1.921	0.00097745	1.9345	0.00098431	509.3131556812145	97.275	0.080154	97.275	97.21	97.291	0					7	5	2	0	0	0	0.34378	1	26010	26010		3.9444	0.3479	1	38325			26958	6878	15402	15403	33559	33559					0.09943807862362064
LSLFFSQLP	9	Unmodified	_LSLFFSQLP_					0	0	0			REV__ENST00000531381.1_1_11:121972385-121972643:-|nuORF	REV__ENST00000531381.1_1_11:121972385-121972643:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7606811523438	2	526.294768	1050.57498	0.49224	0.00025906	-0.19882	-0.00010464	0.29342	0.00015443	526.2945660421909	81.712	0.706	81.712	81.375	82.081	0					59	28	3	0	0	0	0.22674	1	21231	21231		22.736	8.8302	1	272730	+		26959	22022	15403	15404	33560	33560					0.051718151084287456
LSLFFSQLP	9	Unmodified	_LSLFFSQLP_					0	0	0			REV__ENST00000531381.1_1_11:121972385-121972643:-|nuORF	REV__ENST00000531381.1_1_11:121972385-121972643:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7606811523438	2	526.294768	1050.57498	0.5206	0.00027399	-0.3213	-0.0001691	0.1993	0.00010489	526.2945064411155	81.713	0.63266	81.689	81.351	81.984	-0.02404					56	27	3	0	0	0	0.20167	1	21228	21228		29.082	8.628	1	384670	+		26960	22022	15403	15404	33561	33561					0.051718151084287456
LSLFRRAR	8	Unmodified	_LSLFRRAR_					0	0	0			REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3025817871094	2	509.817067	1017.61958	0.63021	0.00032129	0.60208	0.00030695	1.2323	0.00062824	509.81749972404026	78.692	0.51699	78.692	78.389	78.906	0					35	19	3	0	0	0	0.34167	1	20387	20387		11.64	8.0438	1	136800	+		26961	14599	15404	15405	33562	33562					0.11147683765125294
LSLGNKRTL	9	Unmodified	_LSLGNKRTL_					0	0	0		nc|ENSG00000148735|Q5SXH7-4|PLEKHS1;nc|ENSG00000148735|Q5SXH7-3|PLEKHS1;nc|ENSG00000148735|Q5SXH7-2|PLEKHS1;nc|ENSG00000148735|Q5SXH7-1|PLEKHS1;nc|ENSG00000148735|Q5SXH7|PLEKHS1;ENSG00000148735|ENST00000694986|PLEKHS1	nc|ENSG00000148735|Q5SXH7-4|PLEKHS1	nc|ENSG00000148735|Q5SXH7-4|PLEKHS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.63458251953125	2	501.308741	1000.60293	0.25812	0.0001294	-1.4846	-0.00074425	-1.2265	-0.00061485	501.30748039729843	94.574	1.7253	94.657	94.366	96.092	0.082779					201	152	2	0	0	0	0.22674	1	25544	25544		12.241	2.1667	1	616230			26962	4826	15405	15406	33563	33563					0.10265138088516323
LSLGNKRTL	9	Unmodified	_LSLGNKRTL_					0	0	0		nc|ENSG00000148735|Q5SXH7-4|PLEKHS1;nc|ENSG00000148735|Q5SXH7-3|PLEKHS1;nc|ENSG00000148735|Q5SXH7-2|PLEKHS1;nc|ENSG00000148735|Q5SXH7-1|PLEKHS1;nc|ENSG00000148735|Q5SXH7|PLEKHS1;ENSG00000148735|ENST00000694986|PLEKHS1	nc|ENSG00000148735|Q5SXH7-4|PLEKHS1	nc|ENSG00000148735|Q5SXH7-4|PLEKHS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.6345520019531	2	501.308741	1000.60293	0.42651	0.00021381	0.5804	0.00029096	1.0069	0.00050477	501.30897147554106	94.646	0.69213	94.644	94.349	95.041	-0.0020142					114	60	2	0	0	0	0.24471	1	25186	25186		12.241	2.1667	1	479050			26963	4826	15405	15406	33564	33564					0.10265138088516323
LSLGQGALTL	10	Unmodified	_LSLGQGALTL_					0	0	0		ENST00000395878.7_1_16:23582504-23582672:+|nuORF	ENST00000395878.7_1_16:23582504-23582672:+|nuORF	ENST00000395878.7_1_16:23582504-23582672:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7996826171875	2	486.78985	971.565146	0.52105	0.00025364	1.1829	0.00057584	1.704	0.00082949	486.7916191349198	83.268	0.96069	83.268	82.874	83.835	0					75	36	3	0	0	0	0.30958	1	21826	21826		19.257	2.3147	1	279470			26964	10099	15406	15407	33565	33565					0.07822627103041668
LSLGRGAGLE	10	Unmodified	_LSLGRGAGLE_					0	0	0			REV__ENST00000357203.7_1_3:50603448-50605047:-|nuORF	REV__ENST00000357203.7_1_3:50603448-50605047:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.77734375	2	486.777274	971.539994	-0.003872	-1.8848E-06	0.17243	8.3936E-05	0.16856	8.2051E-05	486.7773412614177	27.656	0.71358	27.656	27.408	28.121	0					62	24	3	0	0	0	0.19885	1	4761	4761		32.786	0	1	711780	+		26965	20211	15407	15408	33566	33566					0.05308572300475589
LSLGRRGNF	9	Unmodified	_LSLGRRGNF_					0	0	0		ENST00000321027.7_3_2:75929435-75937941:-|nuORF	ENST00000321027.7_3_2:75929435-75937941:-|nuORF	ENST00000321027.7_3_2:75929435-75937941:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2817687988281	2	510.290882	1018.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.036	1	89.127	88.627	89.627	0.090569								0	0	0	0.24522	1	23537	23537		7.9102	0	1				26966	9379	15408	15409	33567	33567					0.05867100631519406
LSLGVAALYK	10	Unmodified	_LSLGVAALYK_					0	0	0		ENSG00000164919|ENST00000520468|COX6C	ENSG00000164919|ENST00000520468|COX6C	ENSG00000164919|ENST00000520468|COX6C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8161010742188	2	517.815867	1033.61718	0.49425	0.00025593	-0.078847	-4.0828E-05	0.4154	0.0002151	517.815818198858	58.453	0.94814	58.453	58.159	59.107	0					74	32	3	0	0	0	1.5864E-08	4	14191	14140;14191;14239;14308		160.69	76.025	1	5362700			26967	5898	15409	15410	33568;33569;33570;33571	33569					0.10171790516778856
LSLGVAALYK	10	Unmodified	_LSLGVAALYK_					0	0	0		ENSG00000164919|ENST00000520468|COX6C	ENSG00000164919|ENST00000520468|COX6C	ENSG00000164919|ENST00000520468|COX6C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.816162109375	2	517.815867	1033.61718	0.34839	0.0001804	0.13375	6.926E-05	0.48214	0.00024966	517.8159099960898	58.291	0.9575	58.377	58.084	59.041	0.085621					82	33	3	0	0	0	5.2621E-09	3	14107	14107;14155;14209		173.69	73.931	1	5066800			26968	5898	15409	15410	33572;33573;33574	33572					0.10171790516778856
LSLGVAALYK	10	Unmodified	_LSLGVAALYK_					0	0	0		ENSG00000164919|ENST00000520468|COX6C	ENSG00000164919|ENST00000520468|COX6C	ENSG00000164919|ENST00000520468|COX6C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3178100585938	2	517.815867	1033.61718	0.66547	0.00034459	-0.15225	-7.8837E-05	0.51322	0.00026576	517.8157585671908	58.481	0.91559	58.466	58.169	59.084	-0.014267					76	32	3	0	0	0	1.5864E-08	4	14135	14134;14135;14159;14210		160.69	83.781	1	5812400			26969	5898	15409	15410	33575;33576;33577;33578	33576					0.10171790516778856
LSLGWVGRL	9	Unmodified	_LSLGWVGRL_					0	0	0			REV__ENST00000375050.5_1_6:32153594-32154113:-|nuORF	REV__ENST00000375050.5_1_6:32153594-32154113:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.798828125	2	500.800552	999.58655	0.43377	0.00021723	-2.218	-0.0011108	-1.7842	-0.00089355	500.7984331411603	89.231	0.83432	89.23	88.78	89.614	-0.00080872					79	40	3	0	0	0	0.29176	1	23582	23582		10.074	0.6908	1	277570	+		26970	20470	15410	15411	33579	33579					0.08674056922416185
LSLHAPPAP	9	Unmodified	_LSLHAPPAP_					0	0	0			REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7560119628906	2	451.758352	901.502152	-0.1847	-8.3442E-05	-0.86666	-0.00039152	-1.0514	-0.00047496	451.7562733675178	13.473	0.57946	13.374	13.189	13.768	-0.099291					53	20	4	0	0	0	0.28128	1	441	441		11.64	0	1	159180	+		26971	23077	15411	15412	33580	33580					0.0474610610565378
LSLHAPPAP	9	Unmodified	_LSLHAPPAP_					0	0	0			REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	451.758352	901.502152	-0.14919	-6.7399E-05	-4.5177	-0.0020409	-4.6669	-0.0021083	451.75622987003607	13.381	0.70527	13.381	13.227	13.932	0	0.0034493	4.5469E-05	NaN	11.64	33	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119980	+		26972	23077	15411	15412							0.0474610610565378
LSLHAPPAP	9	Unmodified	_LSLHAPPAP_					0	0	0			REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	451.758352	901.502152	-0.1847	-8.3442E-05	-0.86666	-0.00039152	-1.0514	-0.00047496	451.7562733675178	13.473	0.57946	13.374	13.189	13.768	-0.099291	-0.003605	0.0033442	NaN	11.64	53	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159180	+		26973	23077	15411	15412							0.0474610610565378
LSLHAPPAP	9	Unmodified	_LSLHAPPAP_					0	0	0			REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	451.758352	901.502152	-0.18806	-8.4957E-05	-4.7002	-0.0021233	-4.8882	-0.0022083	451.7562365756642	13.445	0.75863	13.377	13.189	13.947	-0.067496	0.00015571	-0.0001194	NaN	11.64	42	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121970	+		26974	23077	15411	15412							0.0474610610565378
LSLHHTFLY	9	Unmodified	_LSLHHTFLY_					0	0	0			REV__ENST00000483629.5_1_22:29695128-29696148:+|nuORF	REV__ENST00000483629.5_1_22:29695128-29696148:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7613525390625	2	565.803291	1129.59203	0.092764	5.2486E-05	0.3078	0.00017416	0.40057	0.00022664	565.8031263554508	65.262	1.1723	65.262	64.699	65.871	0					69	42	3	0	0	0	0.24311	1	16155	16155		11.64	0	1	782090	+		26975	21519	15412	15413	33581	33581					0.032417357142321634
LSLHKKIR	8	Unmodified	_LSLHKKIR_					0	0	0			REV__TNKS2|p.E1150Sfs*3|1|0.23|ENSG00000107854|chr10:91862946-91862946|G/-|frameshift_variant	REV__TNKS2|p.E1150Sfs*3|1|0.23|ENSG00000107854|chr10:91862946-91862946|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.94879150390625	2	497.829643	993.644734	0.079243	3.9449E-05	0.016233	8.0813E-06	0.095476	4.7531E-05	497.8296131584076	39.681	0.37603	39.681	39.51	39.886	0					23	13	2	0	0	0	0.34167	1	8441	8441		11.64	0.81637	1	200160	+		26976	14567	15413	15414	33582	33582					0.14765738567700737
LSLHPFVQRL	10	Unmodified	_LSLHPFVQRL_					0	0	0			REV__ENSG00000188993|ENST00000682860|LRRC66	REV__ENSG00000188993|ENST00000682860|LRRC66	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.56524658203125	3	403.908269	1208.70298	-0.73596	-0.00029726	-1.8049	-0.00072902	-2.5409	-0.0010263	403.90866868064694	35.272	0.26792	35.272	35.144	35.412	0					16	9	3	0	0	0	0.32068	1	7031	7031		0.62683	0	1	23770	+		26977	18589	15414	15415	33583	33583					0.10697375422319055
LSLHWFTL	8	Unmodified	_LSLHWFTL_					0	0	0			REV__ENST00000556698.5_3_14:100835530-100841642:-|nuORF	REV__ENST00000556698.5_3_14:100835530-100841642:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.30218505859375	2	508.781828	1015.5491	0.11778	5.9924E-05	-3.2264	-0.0016415	-3.1086	-0.0015816	508.78007686079394	49.162	0.34205	49.194	49.014	49.356	0.032043					17	11	2	0	0	0	0.33245	1	11268	11268		13.508	7.7475	1	103680	+		26978	22262	15415	15416	33584	33584					0.04194965656813565
LSLIAVENVRL	11	Unmodified	_LSLIAVENVRL_					0	0	0			REV__ENST00000455385.6_1_7:105731299-105731344:-|nuORF	REV__ENST00000455385.6_1_7:105731299-105731344:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5875549316406	3	409.587084	1225.73942	-1.2485	-0.00051135	1.4611	0.00059847	0.21269	8.7115E-05	409.5876110874669	34.674	0.92028	34.674	34.306	35.227	0					77	32	4	0	0	0	0.39244	1	6829	6829		12.228	0.052842	1	737130	+		26979	21160	15416	15417	33585	33585					0.13558207528376442
LSLIERKAF	9	Unmodified	_LSLIERKAF_					0	0	0			REV__TRAF6|p.P239Qfs*32|1|0.34|ENSG00000175104|chr11:36492591-36492591|G/-|frameshift_variant	REV__TRAF6|p.P239Qfs*32|1|0.34|ENSG00000175104|chr11:36492591-36492591|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2544555664062	2	538.826766	1075.63898	0.23236	0.0001252	-0.46956	-0.00025301	-0.2372	-0.00012781	538.8263100703826	46.31	0.29122	46.31	46.111	46.402	0					16	10	2	0	0	0	0.25066	1	10379	10379		7.2892	2.5332	1	360130	+		26980	17873	15417	15418	33586	33586					0.1041859526535518
LSLIKKYYL	9	Unmodified	_LSLIKKYYL_					0	0	0			REV__nc|ENSG00000103599|Q86VS3-4|IQCH	REV__nc|ENSG00000103599|Q86VS3-4|IQCH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.7899169921875	2	570.854993	1139.69543	0.68839	0.00039297	2.1401	0.0012217	2.8285	0.0016147	570.8565102665204	78.254	0.37291	78.254	77.955	78.328	0					19	13	2	0	0	0	0.25526	1	20220	20220		7.9102	1.187	1	86094	+		26981	14381	15418	15419	33587	33587					0.13117223102040043
LSLKLLVKYIY	11	Unmodified	_LSLKLLVKYIY_					0	0	0			REV__Harlequin-int_dup372|chr10:84170027-84170994:-|2.229433011874135|0.252139802420439|3.14|509.0|28|2|sense	REV__Harlequin-int_dup372|chr10:84170027-84170994:-|2.229433011874135|0.252139802420439|3.14|509.0|28|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.6246337890625	3	451.623246	1351.84791	0.38451	0.00017365	1.6358	0.00073879	2.0204	0.00091244	451.624543964105	40.23	1.144	40.323	39.994	41.138	0.09267					151	41	5	0	0	0	0.47633	1	8541	8541		1.2148	0.70888	1	1639800	+		26982	22715	15419	15420	33588	33588					0.1860599877882123
LSLKNYDRNK	10	Unmodified	_LSLKNYDRNK_					0	0	0			REV__L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|17|1|sense	REV__L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|17|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.55804443359375	3	417.566571	1249.67788	-0.063394	-2.6471E-05	-0.47414	-0.00019799	-0.53754	-0.00022446	417.5663075257925	15.686	0.58192	15.622	15.333	15.915	-0.064413					49	19	4	0	0	0	0.32068	1	1019	1019		3.5871	3.5871	1	86044	+		26983	22807	15420	15421	33589	33589					0.06303275829077393
LSLKNYDRNK	10	Unmodified	_LSLKNYDRNK_					0	0	0			REV__L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|17|1|sense	REV__L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|17|1|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	417.566571	1249.67788	-0.26543	-0.00011083	-0.58083	-0.00024253	-0.84626	-0.00035337	417.5663067143725	15.603	0.56498	15.603	15.382	15.947	0	-0.019959	-6.3326E-05	NaN	3.5871	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90270	+		26984	22807	15420	15421							0.06303275829077393
LSLKNYDRNK	10	Unmodified	_LSLKNYDRNK_					0	0	0			REV__L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|17|1|sense	REV__L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|17|1|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	417.566571	1249.67788	-0.032741	-1.3671E-05	-0.54579	-0.0002279	-0.57853	-0.00024158	417.56636067383505	15.754	0.57865	15.644	15.347	15.925	-0.10982	0.021286	-1.9437E-05	NaN	3.5871	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64083	+		26985	22807	15420	15421							0.06303275829077393
LSLKPGQGLI	10	Unmodified	_LSLKPGQGLI_					0	0	0		ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2922973632812	2	513.321317	1024.62808	0.315	0.00016169	-0.067	-3.4392E-05	0.248	0.0001273	513.3209784711664	63.029	0.43272	63.125	62.957	63.39	0.095722					22	15	2	0	0	0	0.29112	1	15547	15547		24.991	14.917	1	226700			26986	8582	15421	15422	33590	33590					0.11675192891107145
LSLKSKEH	8	Unmodified	_LSLKSKEH_					0	0	0			REV__ENSG00000124383|ENST00000244230|MPHOSPH10	REV__ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2663879394531	2	471.274367	940.53418	-0.13907	-6.554E-05	0.062563	2.9485E-05	-0.076507	-3.6056E-05	471.27438593785223	13.827	0.63115	13.761	13.521	14.152	-0.066068					61	21	5	0	0	0	0.45645	1	624	624		3.5965	0	1	1092800	+		26987	15232	15422	15423	33591	33591					0.0615347378881097
LSLLAWFPL	9	Unmodified	_LSLLAWFPL_					0	0	0		ENSG00000109943|ENST00000227348|CRTAM	ENSG00000109943|ENST00000227348|CRTAM	ENSG00000109943|ENST00000227348|CRTAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.242431640625	2	530.315503	1058.61645	0.21213	0.0001125	-0.59207	-0.00031398	-0.37993	-0.00020148	530.3152886590026	27.33	0.42261	27.308	27.041	27.464	-0.021412					22	14	2	0	0	0	0.25526	1	4645	4645		7.9102	0	1	76350			26988	2283	15423	15424	33592	33592					0.08948995867763188
LSLLLHIYY	9	Unmodified	_LSLLLHIYY_					0	0	0			REV__nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272	REV__nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2794189453125	2	567.831517	1133.64848	0.28152	0.00015986	-3.2479	-0.0018443	-2.9664	-0.0016844	567.829294280785	62.854	0.37475	62.854	62.637	63.011	0					21	13	2	0	0	0	0.22596	1	15578	15578		21.747	2.4897	1	133490	+		26989	19360	15424	15425	33593	33593					0.08700363550883594
LSLLLLALPV	10	Unmodified	_LSLLLLALPV_					0	0	0		nc|ENSG00000095917|Q9BZJ3-2|TPSD1;ENSG00000095917|ENST00000211076|TPSD1	nc|ENSG00000095917|Q9BZJ3-2|TPSD1	nc|ENSG00000095917|Q9BZJ3-2|TPSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.81884765625	2	526.359911	1050.70527	0.098648	5.1925E-05	2.5025	0.0013172	2.6012	0.0013691	526.3609933189133	34.231	0.78213	34.297	34.127	34.909	0.066704					37	27	2	0	0	0	0.32112	1	6750	6750		1.8442	1.2427	1	127610			26990	1459	15425	15426	33594	33594					0.18194411107378983
LSLLLLGPVS	10	Unmodified	_LSLLLLGPVS_					0	0	0		ENST00000395491.6_1_17:21217603-21217801:+|nuORF	ENST00000395491.6_1_17:21217603-21217801:+|nuORF	ENST00000395491.6_1_17:21217603-21217801:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.31365966796875	2	506.326068	1010.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.845	1	67.845	67.345	68.345	0								0	0	0	0.3629	1	17059	17059		9.3831	0	1				26991	10090	15426	15427	33595	33595					0.13268961176606808
LSLLNRRQ	8	Unmodified	_LSLLNRRQ_					0	0	0		ENSG00000197978|ENST00000618348|GOLGA6L9;ENSG00000278662|ENST00000610657|GOLGA6L10;ENSG00000184206|ENST00000510439|GOLGA6L4;nc|ENSG00000197978|A6NEM1-2|GOLGA6L9	ENSG00000197978|ENST00000618348|GOLGA6L9	ENSG00000197978|ENST00000618348|GOLGA6L9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.30657958984375	2	500.306532	998.598512	0.38415	0.00019219	1.0062	0.0005034	1.3903	0.0006956	500.30708694363665	57.72	1.0929	57.806	57.268	58.36	0.085621					53	39	2	0	0	0	0.21687	1	13934	13934		57.471	0	1	600380			26992	7437	15427	15428	33596	33596					0.09915673665614122
LSLLRVNR	8	Unmodified	_LSLLRVNR_					0	0	0			REV__ENSG00000187122|ENST00000266058|SLIT1	REV__ENSG00000187122|ENST00000266058|SLIT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8004150390625	2	485.811451	969.608348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.973	1	40.066	39.566	40.566	0.09267								0	0	0	0.35251	1	8483	8483		13.508	0.97634	1		+		26993	18491	15428	15429	33597	33597					0.12232861670986495
LSLLYHLLY	9	Unmodified	_LSLLYHLLY_					0	0	0			REV__ENST00000428076.1_1_13:19956755-19957193:+|nuORF	REV__ENST00000428076.1_1_13:19956755-19957193:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2615356445312	2	567.831517	1133.64848	0.2294	0.00013026	-0.55596	-0.00031569	-0.32656	-0.00018543	568.3326352585228	98.426	0.10507	98.419	98.389	98.494	-0.0068283					14	10	2	0	0	0	0.25879	1	26391	26391		4.756	4.756	1	76683			26994	20916	15429	15430	33598	33598					0.08700363550906332
LSLMILLPF	9	Unmodified	_LSLMILLPF_					0	0	0			REV__nc|ENSG00000167895|Q8IU68-2|TMC8	REV__nc|ENSG00000167895|Q8IU68-2|TMC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2645263671875	2	523.819564	1045.62458	0.45997	0.00024094	3.1658	0.0016583	3.6258	0.0018993	523.8215094934061	52.941	0.402	52.931	52.654	53.056	-0.0096092					22	14	2	0	0	0	0.24311	1	12468	12468		7.2892	2.96	1	132440	+		26995	17419	15430	15431	33599	33599					0.1035880679287402
LSLNRTPSEII	11	Unmodified	_LSLNRTPSEII_					0	0	0		nc|ENSG00000205754|G3V0H7|SLCO1B7;nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7	nc|ENSG00000205754|G3V0H7|SLCO1B7	nc|ENSG00000205754|G3V0H7|SLCO1B7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.90655517578125	3	414.906594	1241.69795	0.34789	0.00014434	0.39678	0.00016463	0.74467	0.00030897	414.90641053894285	40.406	0.76141	40.506	40.201	40.962	0.099407					120	27	6	0	0	0	0.36722	1	8633	8633		15.538	0.58129	1	3520800			26996	12915	15431	15432	33600	33600					0.08677026769032636
LSLPLDPTL	9	Unmodified	_LSLPLDPTL_					0	0	0		ENSG00000154646|ENST00000284885|TMPRSS15	ENSG00000154646|ENST00000284885|TMPRSS15	ENSG00000154646|ENST00000284885|TMPRSS15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.2662658691406	2	484.786776	967.558998	0.297	0.00014398	-0.72558	-0.00035175	-0.42858	-0.00020777	484.7877352915956	38.065	0.79963	38.155	37.821	38.62	0.090881					43	28	2	0	0	0	0.2451	1	7859	7859		10.824	2.2306	1	220810			26997	5140	15432	15433	33601	33601					0.07392108871522396
LSLPNHVAE	9	Unmodified	_LSLPNHVAE_					0	0	0		ENST00000306376.9_1_3:185765741-185765801:-|nuORF	ENST00000306376.9_1_3:185765741-185765801:-|nuORF	ENST00000306376.9_1_3:185765741-185765801:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2646789550781	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.183	1	89.273	88.773	89.773	0.090569								0	0	0	0.25631	1	23582	23582		4.3292	0.73274	1				26998	9273	15433	15434	33602	33602					0.023328834091330464
LSLPPLTSH	9	Unmodified	_LSLPPLTSH_					0	0	0		ENST00000549775.5_1_17:6920636-6920723:+|nuORF	ENST00000549775.5_1_17:6920636-6920723:+|nuORF	ENST00000549775.5_1_17:6920636-6920723:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.76617431640625	2	482.776742	963.538931	0.39638	0.00019136	-0.70191	-0.00033887	-0.30553	-0.0001475	482.7762267094513	40.677	0.37704	40.77	40.502	40.879	0.09267					21	13	2	0	0	0	0.15219	1	8670	8670		30.637	5.2372	1	191170			26999	11788	15434	15435	33603	33603					0.05570357931560466
LSLPPLTSH	9	Unmodified	_LSLPPLTSH_					0	0	0		ENST00000549775.5_1_17:6920636-6920723:+|nuORF	ENST00000549775.5_1_17:6920636-6920723:+|nuORF	ENST00000549775.5_1_17:6920636-6920723:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.76611328125	2	482.776742	963.538931	0.30633	0.00014789	-0.47999	-0.00023173	-0.17366	-8.3838E-05	482.77654999343974	40.594	0.32985	40.694	40.505	40.835	0.099407					16	11	2	0	0	0	0.10197	1	8652	8652		37.974	5.1883	1	165680			27000	11788	15434	15435	33604	33604					0.05570357931560466
LSLPRTTTI	9	Unmodified	_LSLPRTTTI_					0	0	0		ENST00000497039.1_1_2:65298581-65300050:+|nuORF;nc|ENSG00000011523|Q76N32-2|CEP68;ENSG00000011523|ENST00000377990|CEP68	ENST00000497039.1_1_2:65298581-65300050:+|nuORF	ENST00000497039.1_1_2:65298581-65300050:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2918395996094	2	501.303124	1000.5917	0.71103	0.00035644	0.59797	0.00029976	1.309	0.0006562	501.303371636789	74.777	0.30635	74.777	74.679	74.985	0					16	10	2	0	0	0	0.24467	1	19175	19175		17.113	0	1	147780			27001	446	15435	15436	33605	33605					0.09142315994370165
LSLPRTTTI	9	Unmodified	_LSLPRTTTI_					0	0	0		ENST00000497039.1_1_2:65298581-65300050:+|nuORF;nc|ENSG00000011523|Q76N32-2|CEP68;ENSG00000011523|ENST00000377990|CEP68	ENST00000497039.1_1_2:65298581-65300050:+|nuORF	ENST00000497039.1_1_2:65298581-65300050:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2916259765625	2	501.303124	1000.5917	0.57455	0.00028802	0.47358	0.00023741	1.0481	0.00052543	501.3033491415633	74.994	1.0794	74.962	74.557	75.637	-0.031487					55	39	2	0	0	0	0.20626	1	19176	19176		22.736	1.1993	1	164330			27002	446	15435	15436	33606	33606					0.09142315994370165
LSLPWLLNKEL	11	Unmodified	_LSLPWLLNKEL_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.22442626953125	3	442.599101	1324.77547	0.16434	7.2736E-05	0.72998	0.00032309	0.89432	0.00039583	442.5993822090477	43.579	0.88626	43.579	43.257	44.143	0					57	32	2	0	0	0	0.33263	1	9624	9624		2.084	0.75432	1	328400			27003	2574	15436	15437	33607	33607					0.1260766470525141
LSLPWLLNKEL	11	Unmodified	_LSLPWLLNKEL_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	442.599101	1324.77547	0.27697	0.00012259	0.48596	0.00021508	0.76293	0.00033767	442.5992883719814	43.58	0.72732	43.664	43.217	43.944	0.083992	0.042278	-0.0001931	NaN	2.084	45	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277360			27004	2574	15436	15437							0.1260766470525141
LSLQHRRAQ	9	Unmodified	_LSLQHRRAQ_					0	0	0		ENSG00000139537|ENST00000320516|CCDC65;nc|ENSG00000139537|Q8IXS2-2|CCDC65	ENSG00000139537|ENST00000320516|CCDC65	ENSG00000139537|ENST00000320516|CCDC65	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.7770385742188	2	554.820338	1107.62612	0.34813	0.00019315	3.005	0.0016673	3.3532	0.0018604	554.8230221999942	70.267	0.24681	70.267	70.103	70.35	0					10	8	2	0	0	0	0.24688	1	17775	17775		14.838	0.93222	1	54813			27005	4243	15437	15438	33608	33608					0.0766157692582965
LSLQKLWFYI	10	Unmodified	_LSLQKLWFYI_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.8945007324219	3	437.588425	1309.74344	-0.031651	-1.385E-05	-0.85966	-0.00037618	-0.89131	-0.00039003	437.58809830759577	52.146	0.35477	52.146	51.941	52.296	0					21	12	2	0	0	0	0.31911	1	12256	12256		3.8763	0	1	194060			27006	3492	15438	15439	33609	33609					0.10096297022073486
LSLQKYPF	8	Unmodified	_LSLQKYPF_					0	0	0		ENST00000494567.1_1_15:99759074-99762030:-|nuORF	ENST00000494567.1_1_15:99759074-99762030:-|nuORF	ENST00000494567.1_1_15:99759074-99762030:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2920837402344	2	498.28166	994.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.016	1	52.067	51.567	52.567	0.050575								0	0	0	0.35251	1	12181	12181		13.508	1.8676	1				27007	11209	15439	15440	33610	33610					0.05127545936943534
LSLRDNFLQ	9	Unmodified	_LSLRDNFLQ_					0	0	0			REV__nc|ENSG00000198300|Q9GZU2-2|PEG3	REV__nc|ENSG00000198300|Q9GZU2-2|PEG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3026123046875	2	553.303655	1104.59276	0.32274	0.00017857	0.22105	0.00012231	0.54379	0.00030088	553.3037448377555	39.414	1.017	39.513	39.184	40.201	0.099403					96	36	4	0	0	0	0.25989	1	8231	8231		14.838	2.5976	1	5712200	+		27008	18815	15440	15441	33611	33611					0.04464530363270569
LSLRGPGSP	9	Unmodified	_LSLRGPGSP_					0	0	0			REV__ENST00000250124.10_1_17:7491195-7491456:+|nuORF	REV__ENST00000250124.10_1_17:7491195-7491456:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.9151611328125	2	442.253434	882.492316	-0.17217	-7.6142E-05	0.14188	6.2745E-05	-0.030294	-1.3398E-05	442.2535194819524	28.121	0.58224	28.122	27.739	28.322	0.0004673					24	20	2	0	0	0	0.25202	1	4883	4883		10.824	0	1	76784	+		27009	19518	15441	15442	33612	33612					0.04636918100288767
LSLRLRPKA	9	Unmodified	_LSLRLRPKA_					0	0	0		ENSG00000137103|ENST00000643932|TMEM8B	ENSG00000137103|ENST00000643932|TMEM8B	ENSG00000137103|ENST00000643932|TMEM8B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.30615234375	2	527.3482	1052.68185	0.44753	0.00023601	-0.29294	-0.00015448	0.1546	8.1526E-05	527.3478900078628	25.094	0.45533	25.094	24.872	25.328	0					26	15	2	0	0	0	0.25202	1	3923	3923		10.824	0	1	129730			27010	4027	15442	15443	33613	33613					0.1576141011346408
LSLRQRKP	8	Unmodified	_LSLRQRKP_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3172912597656	2	499.3169	996.619247	0.17411	8.6939E-05	0.42629	0.00021285	0.6004	0.00029979	499.31710708723807	17.734	0.20539	17.616	17.489	17.694	-0.11739					11	6	2	0	0	0	0.45307	1	1739	1739		4.756	0	1	51771			27011	2325	15443	15444	33614	33614					0.12080264045278
LSLRRSLPRGL	11	Unmodified	_LSLRRSLPRGL_					0	0	0			REV__ENSG00000269855|ENST00000601382|RNF225	REV__ENSG00000269855|ENST00000601382|RNF225	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.2701110839844	3	423.270089	1266.78844	-0.16652	-7.0484E-05	0.12875	5.4497E-05	-0.037768	-1.5986E-05	423.2700251309293	22.142	0.80784	22.093	21.804	22.612	-0.049377					65	28	4	0	0	0	0.3299	1	3039	3039		6.6235	0	1	256950	+		27012	19311	15444	15445	33615	33615					0.16571540607969837
LSLSCLSGLAP	11	Unmodified	_LSLSCLSGLAP_					0	0	0			REV__ENST00000250916.5_1_19:1852642-1853044:-|nuORF	REV__ENST00000250916.5_1_19:1852642-1853044:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3218383789062	2	530.788992	1059.56343	0.59387	0.00031522	-3.3701	-0.0017888	-2.7762	-0.0014736	530.7866185960268	68.773	0.45997	68.773	68.491	68.951	0					25	16	2	0	0	0	0.29118	1	17326	17326		27.629	1.3607	1	330840	+		27013	19519	15445	15446	33616	33616					0.03603250022774773
LSLSEFSCTCL	11	Unmodified	_LSLSEFSCTCL_					0	0	0			REV__ENST00000228495.10_1_12:109887036-109887168:-|nuORF	REV__ENST00000228495.10_1_12:109887036-109887168:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.361083984375	2	601.775225	1201.5359	0.46889	0.00028217	2.1945	0.0013206	2.6634	0.0016027	602.2775376362137	57.996	0.72388	57.979	57.659	58.383	-0.0172					41	26	3	0	0	0	0.32293	1	14072	14072		18.146	5.1039	1	228680	+		27014	19447	15446	15447	33617	33617					-0.05681021299733402
LSLSETQVKT	10	Unmodified	_LSLSETQVKT_					0	0	0		ENSG00000188909|ENST00000343035|BSX	ENSG00000188909|ENST00000343035|BSX	ENSG00000188909|ENST00000343035|BSX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3092651367188	2	553.308603	1104.60265	0.29608	0.00016383	0.76748	0.00042465	1.0636	0.00058848	553.308888562812	24.582	0.70864	24.582	24.134	24.843	0					40	23	3	0	0	0	0.38515	1	3805	3805		6.2058	0	1	85731			27015	7785	15447	15448	33618	33618					0.05453673578017515
LSLSETQVKT	10	Unmodified	_LSLSETQVKT_					0	0	0		ENSG00000188909|ENST00000343035|BSX	ENSG00000188909|ENST00000343035|BSX	ENSG00000188909|ENST00000343035|BSX	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.308603	1104.60265	0.29608	0.00016383	0.76748	0.00042465	1.0636	0.00058848	553.308888562812	24.582	0.70864	24.582	24.134	24.843	0	0.012237	-0.00022273	NaN	6.2058	40	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85731			27016	7785	15447	15448							0.05453673578017515
LSLSETQVKT	10	Unmodified	_LSLSETQVKT_					0	0	0		ENSG00000188909|ENST00000343035|BSX	ENSG00000188909|ENST00000343035|BSX	ENSG00000188909|ENST00000343035|BSX	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.308603	1104.60265	0.33731	0.00018664	0.94968	0.00052547	1.287	0.00071211	553.3091293483008	24.625	0.49394	24.569	24.344	24.837	-0.055931	-0.00056377	-2.1098E-05	NaN	6.2058	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115760			27017	7785	15447	15448							0.05453673578017515
LSLSETQVKT	10	Unmodified	_LSLSETQVKT_					0	0	0		ENSG00000188909|ENST00000343035|BSX	ENSG00000188909|ENST00000343035|BSX	ENSG00000188909|ENST00000343035|BSX	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	553.308603	1104.60265	0.10668	5.9025E-05	1.1857	0.00065606	1.2924	0.00071509	553.3092245985906	24.589	0.45285	24.558	24.344	24.796	-0.031408	-0.011673	0.00024009	NaN	6.2058	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142670			27018	7785	15447	15448							0.05453673578017515
LSLSISAPFL	10	Unmodified	_LSLSISAPFL_					0	0	0		ENST00000525102.5_1_11:118895443-118895587:-|nuORF	ENST00000525102.5_1_11:118895443-118895587:-|nuORF	ENST00000525102.5_1_11:118895443-118895587:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2847290039062	2	524.307875	1046.6012	0.60305	0.00031618	0.079725	4.1801E-05	0.68277	0.00035798	524.307553657673	42.21	0.46223	42.301	42.007	42.47	0.091362					20	15	2	0	0	0	0.26638	1	9126	9126		18.146	0	1	203840			27019	11532	15448	15449	33619	33619					0.07976084279903262
LSLSLAGALF	10	Unmodified	_LSLSLAGALF_					0	0	0		ENST00000587494.1_1_19:10959184-10970726:+|nuORF;ENSG00000214212|ENST00000397820|C19orf38	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.69012451171875	2	496.294768	990.574983	0.15898	7.8902E-05	-1.8433	-0.0009148	-1.6843	-0.0008359	496.2936505821085	60.337	0.31536	60.337	60.126	60.441	0					14	11	2	0	0	0	0.27337	1	14746	14746		29.082	6.3453	1	231310			27020	8380	15449	15450	33620	33620					0.07931815108429419
LSLSLAGALF	10	Unmodified	_LSLSLAGALF_					0	0	0		ENST00000587494.1_1_19:10959184-10970726:+|nuORF;ENSG00000214212|ENST00000397820|C19orf38	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	496.294768	990.574983	-0.088785	-4.4064E-05	-1.1497	-0.00057057	-1.2384	-0.00061463	496.29399321890713	60.261	0.24238	60.356	60.18	60.422	0.095093	0.031134	0.00030621	NaN	29.082	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161400			27021	8380	15449	15450							0.07931815108429419
LSLSLAGALF	10	Unmodified	_LSLSLAGALF_					0	0	0		ENST00000587494.1_1_19:10959184-10970726:+|nuORF;ENSG00000214212|ENST00000397820|C19orf38	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	ENST00000587494.1_1_19:10959184-10970726:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	496.294768	990.574983	0.21748	0.00010794	-1.5101	-0.00074945	-1.2926	-0.00064152	496.29379619855564	60.293	0.29561	60.282	60.108	60.404	-0.011486	-0.043257	-5.1555E-05	NaN	29.082	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171010			27022	8380	15449	15450							0.07931815108429419
LSLSLPILV	9	Unmodified	_LSLSLPILV_					0	0	0		nc|ENSG00000269565|Q8NGA4|GPR32P1	nc|ENSG00000269565|Q8NGA4|GPR32P1	nc|ENSG00000269565|Q8NGA4|GPR32P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.8154296875	2	477.815336	953.616119	0.36445	0.00017414	0.33539	0.00016026	0.69985	0.0003344	477.81533531934326	94.001	0.75002	94	93.705	94.455	-0.00051117					145	54	4	0	0	0	0.055495	1	25060	25060		50.855	0	1	964660			27023	12991	15450	15451	33621	33621					0.13745576147914562
LSLSSFDLIE	10	Unmodified	_LSLSSFDLIE_					0	0	0			REV__ENST00000518174.5_1_8:29921339-29923512:-|nuORF	REV__ENST00000518174.5_1_8:29921339-29923512:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.7647705078125	2	562.297704	1122.58086	0.078821	4.4321E-05	-2.0328	-0.001143	-1.954	-0.0010987	562.2966172912953	22.64	0.68666	22.64	22.39	23.077	0					35	23	2	0	0	0	0.31629	1	3184	3184		10.074	1.4806	1	87053	+		27024	21863	15451	15452	33622	33622					0.024468688294291496
LSLSTSKLPKQ	11	Unmodified	_LSLSTSKLPKQ_					0	0	0			REV__ENSG00000139687|ENST00000267163|RB1	REV__ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.361572265625	2	601.36117	1200.70779	0.54725	0.00032909	0.15561	9.3575E-05	0.70285	0.00042267	601.3610999511586	58.232	0.60898	58.232	57.986	58.595	0					52	20	3	0	0	0	0.049441	1	14084	14084		53.404	9.6316	1	1348100	+		27025	16001	15452	15453	33623	33623					0.11546214774398322
LSLSTSKLPKQ	11	Unmodified	_LSLSTSKLPKQ_					0	0	0			REV__ENSG00000139687|ENST00000267163|RB1	REV__ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.3612670898438	2	601.36117	1200.70779	0.53793	0.00032349	-0.045182	-2.717E-05	0.49275	0.00029632	601.3609904851558	58.083	0.60418	58.168	57.92	58.524	0.085621					50	21	3	0	0	0	0.010867	2	14050	14050;14100		67.838	14.434	1	1239800	+		27026	16001	15452	15453	33624;33625	33624					0.11546214774398322
LSLSTSKLPKQ	11	Unmodified	_LSLSTSKLPKQ_					0	0	0			REV__ENSG00000139687|ENST00000267163|RB1	REV__ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.3613891601562	2	601.36117	1200.70779	0.67869	0.00040814	-0.055116	-3.3144E-05	0.62358	0.000375	601.3609930730535	58.243	0.60276	58.226	57.977	58.58	-0.017197					54	21	4	0	0	0	0.010867	2	14122	14072;14122		67.838	14.434	1	1338000	+		27027	16001	15452	15453	33626;33627	33627					0.11546214774398322
LSLSVFFV	8	Unmodified	_LSLSVFFV_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.79254150390625	2	456.265479	910.516405	-1.3888	-0.00063365	0.82359	0.00037577	-0.56518	-0.00025787	456.26563579504597	34.606	0.62706	34.681	34.444	35.071	0.075306					49	22	3	0	0	0	0.34046	1	6918	6918		14.582	0	1	547440	+		27028	15113	15453	15454	33628	33628					0.05756758533959783
LSLTHNEWKG	10	Unmodified	_LSLTHNEWKG_					0	0	0			REV__GRIN2A|p.F847Lfs*30|1|0.22|ENSG00000183454|chr16:9768906-9768907|AA/-|frameshift_variant	REV__GRIN2A|p.F847Lfs*30|1|0.22|ENSG00000183454|chr16:9768906-9768907|AA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.2809448242188	2	592.806562	1183.59857	0.82307	0.00048792	3.453	0.002047	4.2761	0.0025349	593.3106301957175	48.041	0.31861	48.088	48.022	48.341	0.047523					15	11	2	0	0	0	0.31143	1	10950	10950		17.113	2.7075	1	433550	+		27029	18263	15454	15455	33629	33629					0.014116288749164596
LSLTLVNSSR	10	Unmodified	_LSLTLVNSSR_					0	0	0			REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3170166015625	2	545.316763	1088.61897	0.44923	0.00024497	-0.11532	-6.2886E-05	0.33391	0.00018209	545.3167475035995	80.336	3.7431	80.336	79.338	83.081	0					624	150	6	0	0	0	0.37133	3	20797	20797;20927;21060		8.7454	3.0136	1	16346000	+		27030	14518	15455	15456	33630;33631;33632	33630					0.07820799534761136
LSLTLVNSSR	10	Unmodified	_LSLTLVNSSR_					0	0	0			REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3171997070312	2	545.316763	1088.61897	0.44591	0.00024316	-0.03167	-1.727E-05	0.41424	0.00022589	545.3167857690152	80.248	3.793	80.313	79.277	83.07	0.065102					607	160	5	0	0	0	0.37133	1	21088	21088		8.7454	8.7454	1	16780000	+		27031	14518	15455	15456	33633	33633					0.07820799534761136
LSLTLVNSSR	10	Unmodified	_LSLTLVNSSR_					0	0	0			REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.31689453125	2	545.316763	1088.61897	0.6091	0.00033216	-0.26726	-0.00014574	0.34184	0.00018641	545.3166247243353	80.334	3.1168	80.308	79.473	82.59	-0.026817					523	123	6	0	0	0	0.37133	2	20796	20796;21187		8.7454	2.0222	1	17985000	+		27032	14518	15455	15456	33634;33635	33634					0.07820799534761136
LSLTPPLVLPA	11	Unmodified	_LSLTPPLVLPA_					0	0	0		FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant;ENSG00000188352|ENST00000338382|FOCAD	FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant	FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.765869140625	2	560.85245	1119.69035	0.10057	5.6404E-05	-1.1906	-0.00066777	-1.0901	-0.00061136	560.8517684200201	33.615	0.57949	33.681	33.387	33.967	0.0667					26	20	2	0	0	0	0.3239	1	6513	6513		17.113	3.2068	1	126260			27033	7745	15456	15457	33636	33636					0.13528919239411152
LSLVDWAKS	9	Unmodified	_LSLVDWAKS_					0	0	0		ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.78240966796875	2	509.782025	1017.5495	0.18342	9.3502E-05	-0.29113	-0.00014841	-0.10771	-5.4911E-05	509.78190852264004	82.094	0.5595	82.163	81.931	82.49	0.068985					40	23	2	0	0	0	0.26612	1	21437	21437		13.906	0	1	497430			27034	1490	15457	15458	33637	33637					0.04142340585997317
LSLVDWAKS	9	Unmodified	_LSLVDWAKS_					0	0	0		ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	ENSG00000099381|ENST00000262519|SETD1A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	509.782025	1017.5495	0.3894	0.00019851	-0.74949	-0.00038208	-0.36009	-0.00018357	509.781633970419	82.147	0.71063	82.147	81.968	82.679	0	-0.040775	-0.00020371	NaN	13.906	33	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462430			27035	1490	15457	15458							0.04142340585997317
LSLWGLRQPN	10	Unmodified	_LSLWGLRQPN_					0	0	0		ENST00000354831.11_1_1:52256636-52257283:-|nuORF	ENST00000354831.11_1_1:52256636-52257283:-|nuORF	ENST00000354831.11_1_1:52256636-52257283:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.8012084960938	2	592.332747	1182.65094	0.57368	0.00033981	-0.3941	-0.00023344	0.17958	0.00010637	592.3326044785655	44.785	0.51438	44.86	44.643	45.157	0.075047					30	18	2	0	0	0	0.31358	1	9945	9945		13.906	1.6654	1	345190			27036	9601	15458	15459	33638	33638					0.0669221200857919
LSLWKWKY	8	Unmodified	_LSLWKWKY_					0	0	0		ENST00000577772.5_1_18:66504000-66564823:+|nuORF;nc|ENSG00000150636|Q68D86-2|CCDC102B;ENSG00000150636|ENST00000360242|CCDC102B	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	ENST00000577772.5_1_18:66504000-66564823:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.8172607421875	2	562.318577	1122.6226	0.066623	3.7464E-05	1.8681	0.0010505	1.9348	0.001088	562.3195518679569	19.186	0.59723	19.186	18.864	19.461	0					36	20	2	0	0	0	0.34437	1	2110	2110		0.69038	0	1	67491			27037	4919	15459	15460	33639	33639					0.06619514099270418
LSLWQKHKYYL	11	Unmodified	_LSLWQKHKYYL_					0	0	0		ENSG00000170448|ENST00000507489|NFXL1	ENSG00000170448|ENST00000507489|NFXL1	ENSG00000170448|ENST00000507489|NFXL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.30029296875	3	493.61	1477.80817	0.21001	0.00010367	-2.7183	-0.0013418	-2.5083	-0.0012381	493.94324617258894	49.236	0.14692	49.269	49.209	49.356	0.032043					6	4	2	0	0	0	0.33263	1	11324	11324		2.084	0	1	93170			27038	6452	15460	15461	33640	33640					0.088378718281092
LSLYIFSFL	9	Unmodified	_LSLYIFSFL_					0	0	0		nc|ENSG00000214050|Q8IX29-2|FBXO16;ENSG00000214050|ENST00000380254|FBXO16;ENST00000517436.5_1_8:28309874-28347735:-|nuORF	nc|ENSG00000214050|Q8IX29-2|FBXO16	nc|ENSG00000214050|Q8IX29-2|FBXO16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.258056640625	2	551.812793	1101.61103	0.45847	0.00025299	-1.1191	-0.00061755	-0.66065	-0.00036456	551.8124362080196	71.808	0.66269	71.781	71.537	72.2	-0.027275					51	23	3	0	0	0	0.21389	1	18363	18363		25.399	0	1	343710			27039	8376	15461	15462	33641	33641					0.06429272285276966
LSLYIKLS	8	Unmodified	_LSLYIKLS_					0	0	0		ENST00000449303.2_1_1:116971885-116975822:-|nuORF	ENST00000449303.2_1_1:116971885-116975822:-|nuORF	ENST00000449303.2_1_1:116971885-116975822:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.79034423828125	2	468.791861	935.569169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.003	1	25.981	25.481	26.481	-0.022238								0	0	0	0.35466	1	4221	4221		12.532	0	1				27040	10629	15462	15463	33642	33642					0.09880716596740058
LSLYNQLI	8	Unmodified	_LSLYNQLI_					0	0	0		ENST00000448464.6_1_8:95942439-95942658:-|nuORF	ENST00000448464.6_1_8:95942439-95942658:-|nuORF	ENST00000448464.6_1_8:95942439-95942658:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.3030090332031	2	482.279118	962.543683	0.66292	0.00031971	0.31437	0.00015161	0.9773	0.00047133	482.2793981414883	50.661	0.51546	50.661	50.407	50.922	0					28	18	2	0	0	0	0.3366	1	11788	11788		18.135	0	1	195620			27041	10618	15463	15464	33643	33643					0.06091242074330694
LSLYNQLI	8	Unmodified	_LSLYNQLI_					0	0	0		ENST00000448464.6_1_8:95942439-95942658:-|nuORF	ENST00000448464.6_1_8:95942439-95942658:-|nuORF	ENST00000448464.6_1_8:95942439-95942658:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.3031311035156	2	482.279118	962.543683	0.79454	0.00038319	0.2316	0.0001117	1.0261	0.00049489	482.2792530711023	50.775	0.40174	50.785	50.511	50.913	0.0095634					22	14	2	0	0	0	0.3366	1	11803	11803		18.135	0	1	165630			27042	10618	15463	15464	33644	33644					0.06091242074330694
LSMDTGLRF	9	Unmodified	_LSMDTGLRF_					0	0	0			REV__ENST00000564642.1_1_16:2042626-2043070:+|nuORF	REV__ENST00000564642.1_1_16:2042626-2043070:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.278564453125	2	520.265684	1038.51682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.059	1	47.114	46.614	47.614	0.054371								0	0	0	0.21009	1	10645	10645		19.257	1.122	1		+		27043	15345	15464	15465	33645	33645					-0.0009018980849759828
LSMEILAKAK	10	Unmodified	_LSMEILAKAK_					0	0	0		ENSG00000132623|ENST00000378392|ANKEF1;ENST00000488991.1_1_20:10018913-10023797:+|nuORF	ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7791748046875	2	552.328285	1102.64202	0.2089	0.00011538	-2.3445	-0.0012949	-2.1356	-0.0011795	552.8295454813923	41.09	0.67423	41.186	40.748	41.422	0.096622					47	24	3	0	0	0	0.31581	1	8683	8683		7.609	0	1	340550			27044	3654	15465	15466	33646	33646					0.09480102327870554
LSMHTTHNHF	10	Unmodified	_LSMHTTHNHF_					0	0	0			REV__nc|ENSG00000091436|Q9NYL2-3|MAP3K20	REV__nc|ENSG00000091436|Q9NYL2-3|MAP3K20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.51434326171875	3	408.857468	1223.55058	-1.2436	-0.00050846	1.6246	0.00066424	0.38101	0.00015578	408.8580846617915	34.962	0.52532	35.038	34.763	35.288	0.075306					30	18	3	0	0	0	0.32009	1	6999	6999		0.13989	0	1	131630	+		27045	14065	15466	15467	33647	33647					-0.052257683167681535
LSMMYRSQSEL	11	Unmodified	_LSMMYRSQSEL_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.8812255859375	3	448.881062	1343.62136	0.23163	0.00010397	-0.042723	-1.9178E-05	0.18891	8.4796E-05	448.88116494298777	26.178	0.97355	26.156	25.867	26.841	-0.022238					88	34	4	0	0	0	0.44351	1	4258	4258		5.5233	1.4067	1	220950			27046	4073	15467	15468	33648	33648					-0.03670856114104026
LSMPAKSRW	9	Unmodified	_LSMPAKSRW_					0	0	0			REV__ENSG00000167104|ENST00000349552|BPIFB6	REV__ENSG00000167104|ENST00000349552|BPIFB6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2987060546875	2	538.289494	1074.56443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.395	1	20.395	19.895	20.895	0								0	0	0	0.2362	1	2525	2525		10.824	1.4765	1		+		27047	17363	15468	15469	33649	33649					0.03013509182346752
LSMPGFIQK	9	Oxidation (M)	_LSM(Oxidation (M))PGFIQK_		LSM(1)PGFIQK		LSM(64)PGFIQK	0	0	1		ENSG00000178971|ENST00000651323|CTC1;nc|ENSG00000178971|Q2NKJ3-2|CTC1;ENST00000578240.1_1_17:8133610-8135926:-|nuORF	ENSG00000178971|ENST00000651323|CTC1	ENSG00000178971|ENST00000651323|CTC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.77880859375	2	518.778428	1035.5423	0.54639	0.00028346	-0.55803	-0.00028949	-0.011634	-6.0356E-06	518.7783732473041	37.835	0.80803	37.835	37.369	38.177	0					52	28	3	0	0	0	0.051692	1	7767	7767		63.961	33.324	1	537890			27048	7092	15469	15470	33650	33650		795			0.02595284713925139
LSMPGFIQK	9	Oxidation (M)	_LSM(Oxidation (M))PGFIQK_		LSM(1)PGFIQK		LSM(46)PGFIQK	0	0	1		ENSG00000178971|ENST00000651323|CTC1;nc|ENSG00000178971|Q2NKJ3-2|CTC1;ENST00000578240.1_1_17:8133610-8135926:-|nuORF	ENSG00000178971|ENST00000651323|CTC1	ENSG00000178971|ENST00000651323|CTC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7786865234375	2	518.778428	1035.5423	0.3907	0.00020269	-0.053589	-2.7801E-05	0.33712	0.00017489	518.778386395189	37.478	0.38407	37.565	37.384	37.768	0.087406					34	13	3	0	0	0	0.13643	1	7728	7728		45.7	25.246	1	457970			27049	7092	15469	15470	33651	33651		795			0.02595284713925139
LSMPGFIQK	9	Oxidation (M)	_LSM(Oxidation (M))PGFIQK_		LSM(1)PGFIQK		LSM(96)PGFIQK	0	0	1		ENSG00000178971|ENST00000651323|CTC1;nc|ENSG00000178971|Q2NKJ3-2|CTC1;ENST00000578240.1_1_17:8133610-8135926:-|nuORF	ENSG00000178971|ENST00000651323|CTC1	ENSG00000178971|ENST00000651323|CTC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7787475585938	2	518.778428	1035.5423	0.33882	0.00017577	0.069198	3.5898E-05	0.40802	0.00021167	518.7783900583432	37.448	0.40582	37.541	37.302	37.707	0.093014					33	14	3	0	0	0	0.0073667	1	7718	7718		96.367	44.098	1	417800			27050	7092	15469	15470	33652	33652		795			0.02595284713925139
LSMPVQRLLE	10	Unmodified	_LSMPVQRLLE_					0	0	0		nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1;ENST00000471043.1_1_7:43436315-43477745:+|nuORF;ENST00000492310.5_1_7:43153648-43477745:+|nuORF	nc|ENSG00000002746|Q76N89-2|HECW1	nc|ENSG00000002746|Q76N89-2|HECW1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.80126953125	2	593.336641	1184.65873	0.55627	0.00033006	-0.44511	-0.0002641	0.11116	6.5953E-05	593.3351171229712	45.053	0.10459	45.053	44.991	45.095	0					6	3	2	0	0	0	0.31515	1	10050	10050		12.241	2.8575	1	144480			27051	297	15470	15471	33653	33653					0.07378603213805945
LSMRDEPRHV	10	Unmodified	_LSMRDEPRHV_					0	0	0			REV__ENST00000390341.2_1_7:38339806-38339917:-|nuORF	REV__ENST00000390341.2_1_7:38339806-38339917:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.56292724609375	3	413.880273	1238.61899	-0.30141	-0.00012475	0.043618	1.8053E-05	-0.25779	-0.00010669	413.8803460526998	15.348	0.90824	15.348	15.1	16.008	0					71	31	5	0	0	0	0.32082	1	1086	1086		1.5923	0	1	321470	+		27052	20581	15471	15472	33654	33654					0.0092247626309927
LSMRLRSKKL	10	Unmodified	_LSMRLRSKKL_					0	0	0			REV__ENSG00000100335|ENST00000325301|MIEF1	REV__ENSG00000100335|ENST00000325301|MIEF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.22027587890625	3	411.260425	1230.75945	-0.27589	-0.00011346	-3.2795	-0.0013487	-3.5554	-0.0014622	411.2589160873004	19.143	0.087673	19.143	19.095	19.183	0					4	2	2	0	0	0	0.32165	1	2152	2152		0.69767	0.19171	1	7851.7	+		27053	14180	15472	15473	33655	33655					0.15329679987348754
LSMRRTSSRF	10	Unmodified	_LSMRRTSSRF_					0	0	0		nc|ENSG00000120049|Q9NS61-8|KCNIP2	nc|ENSG00000120049|Q9NS61-8|KCNIP2	nc|ENSG00000120049|Q9NS61-8|KCNIP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.9083251953125	3	414.224151	1239.65062	0.27362	0.00011334	-3.2864	-0.0013613	-3.0128	-0.001248	414.22293233944475	24.597	0.63137	24.53	24.304	24.935	-0.066549					33	21	2	0	0	0	0.31838	1	3817	3817		7.0371	3.7174	1	80491			27054	12679	15473	15474	33656	33656					0.040384690170412796
LSMSLWGKN	9	Unmodified	_LSMSLWGKN_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.29541015625	2	518.268227	1034.5219	0.50669	0.0002626	-2.5214	-0.0013068	-2.0147	-0.0010442	518.2672215151382	63.88	0.41162	63.87	63.69	64.101	-0.0095329					25	14	3	0	0	0	0.22596	1	15811	15811		21.747	5.8995	1	151950			27055	7771	15474	15475	33657	33657					0.006021140541179193
LSMSTGGLQHT	11	Unmodified	_LSMSTGGLQHT_					0	0	0		TDRD9|p.F1370Sfs*39|1|0.11|ENSG00000156414|chr14:104052040-104052041|CT/-|frameshift_variant	TDRD9|p.F1370Sfs*39|1|0.11|ENSG00000156414|chr14:104052040-104052041|CT/-|frameshift_variant	TDRD9|p.F1370Sfs*39|1|0.11|ENSG00000156414|chr14:104052040-104052041|CT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7630615234375	2	566.27678	1130.53901	0.22028	0.00012474	1.7131	0.00097011	1.9334	0.0010948	566.2777873283081	52.079	0.6221	52.079	51.702	52.324	0					33	22	2	0	0	0	0.31295	1	12202	12202		22.658	8.752	1	213240			27056	23388	15475	15476	33658	33658					-0.021040101307335135
LSMSTGGLQHT	11	Unmodified	_LSMSTGGLQHT_					0	0	0		TDRD9|p.F1370Sfs*39|1|0.11|ENSG00000156414|chr14:104052040-104052041|CT/-|frameshift_variant	TDRD9|p.F1370Sfs*39|1|0.11|ENSG00000156414|chr14:104052040-104052041|CT/-|frameshift_variant	TDRD9|p.F1370Sfs*39|1|0.11|ENSG00000156414|chr14:104052040-104052041|CT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.7632446289062	2	566.27678	1130.53901	0.40392	0.00022873	1.0573	0.00059873	1.4612	0.00082746	566.7788323933868	52.064	0.38054	52.114	51.874	52.254	0.050575					30	13	3	0	0	0	0.28192	1	12180	12180		32.037	7.0465	1	219730			27057	23388	15475	15476	33659	33659					-0.021040101307335135
LSMVILTHSLK	11	Unmodified	_LSMVILTHSLK_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3;TMTC3|p.N621Sfs*8|1|0.03|ENSG00000139324|chr12:88192757-88192758|-/TCGAA|frameshift_variant;TMTC3|p.S557Tfs*2|1|0.32|ENSG00000139324|chr12:88190586-88190586|G/-|frameshift_variant	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.5709533691406	3	414.581053	1240.72133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.394	1	33.46	32.96	33.96	0.066704								0	0	0	0.30034	1	6467	6467		19.144	4.9258	1				27058	4229	15476	15477	33660	33660					0.11059749282003395
LSNAKQVLE	9	Unmodified	_LSNAKQVLE_					0	0	0			REV__ENST00000543087.5_1_11:18512432-18536353:-|nuORF	REV__ENST00000543087.5_1_11:18512432-18536353:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7749938964844	2	501.284931	1000.55531	0.12977	6.5051E-05	1.5739	0.00078895	1.7036	0.000854	501.7875276437133	25.902	0.56882	25.864	25.609	26.178	-0.038671					28	19	2	0	0	0	0.22674	1	4279	4279		17.113	0.96379	1	434910	+		27059	22144	15477	15478	33661	33661					0.05505439097657927
LSNALKLALG	10	Unmodified	_LSNALKLALG_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3136291503906	2	500.313492	998.612431	-0.018221	-9.1164E-06	0.43829	0.00021928	0.42007	0.00021017	500.31363083575667	24.982	1.6222	24.951	24.142	25.764	-0.031408					160	56	4	0	0	0	0.18128	1	4052	4052		34.932	2.1464	1	3732900	+		27060	18568	15478	15479	33662	33662					0.11306906374022674
LSNEEPDDLF	10	Unmodified	_LSNEEPDDLF_					0	0	0			REV__nc|ENSG00000130396|P55196-2|AFDN	REV__nc|ENSG00000130396|P55196-2|AFDN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.7451782226562	2	589.764226	1177.5139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.992	1	97.985	97.485	98.485	-0.0068283								0	0	0	0.35216	1	26243	26243		13.906	0	1		+		27061	15455	15479	15480	33663	33663					-0.06775786452340071
LSNGDFIH	8	Unmodified	_LSNGDFIH_					0	0	0			REV__PIWIL3|p.H519Efs*6|1|0.32|ENSG00000184571|chr22:24735784-24735787|TGTG/-|frameshift_variant	REV__PIWIL3|p.H519Efs*6|1|0.32|ENSG00000184571|chr22:24735784-24735787|TGTG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7765197753906	2	451.721967	901.429381	0.27912	0.00012608	-0.30612	-0.00013828	-0.027003	-1.2198E-05	451.72177807780184	58.639	0.39573	58.639	58.468	58.864	0					22	12	2	0	0	0	0.34092	1	14178	14178		13.508	3.3245	1	350920	+		27062	18321	15480	15481	33664	33664					-0.025276476877706955
LSNGDFIH	8	Unmodified	_LSNGDFIH_					0	0	0			REV__PIWIL3|p.H519Efs*6|1|0.32|ENSG00000184571|chr22:24735784-24735787|TGTG/-|frameshift_variant	REV__PIWIL3|p.H519Efs*6|1|0.32|ENSG00000184571|chr22:24735784-24735787|TGTG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2487487792969	2	451.721967	901.429381	0.22583	0.00010201	0.013802	6.2347E-06	0.23963	0.00010825	451.7218778152754	58.461	0.47824	58.552	58.314	58.792	0.091305					31	16	3	0	0	0	0.34185	1	14212	14212		10.183	10.183	1	372530	+		27063	18321	15480	15481	33665	33665					-0.025276476877706955
LSNGRLDL	8	Unmodified	_LSNGRLDL_					0	0	0			REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF	REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	444.2508850097656	2	444.250892	886.48723	0.084379	3.7485E-05	0.081541	3.6225E-05	0.16592	7.371E-05	444.2507733190964	31.284	0.74672	31.284	30.948	31.694	0					80	26	4	0	0	0	0.13277	1	5833	5833		54.774	0	1	1587200	+		27064	17462	15481	15482	33666	33666					0.03944614237661881
LSNGRLDL	8	Unmodified	_LSNGRLDL_					0	0	0			REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF	REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	444.250892	886.48723	0.084379	3.7485E-05	0.081541	3.6225E-05	0.16592	7.371E-05	444.2507733190964	31.284	0.74672	31.284	30.948	31.694	0	0.0014773	-4.7896E-06	NaN	54.774	80	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1587200	+		27065	17462	15481	15482							0.03944614237661881
LSNGRLDL	8	Unmodified	_LSNGRLDL_					0	0	0			REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF	REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	444.250892	886.48723	-0.097878	-4.3482E-05	0.22727	0.00010096	0.12939	5.7482E-05	444.2508192782027	31.261	0.9138	31.303	30.939	31.852	0.042366	0.020345	0.00012469	NaN	54.774	85	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1736500	+		27066	17462	15481	15482							0.03944614237661881
LSNIKPVVQ	9	Unmodified	_LSNIKPVVQ_					0	0	0			REV__nc|ENSG00000155744|Q8IXS8|HYCC2	REV__nc|ENSG00000155744|Q8IXS8|HYCC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.3238830566406	2	499.305667	996.596781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.193	1	57.193	56.693	57.693	0								0	0	0	0.21009	1	13786	13786		19.257	1.1106	1		+		27067	16709	15482	15483	33667	33667					0.09834619856997051
LSNILEVLD	9	Unmodified	_LSNILEVLD_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.3005065917969	2	508.28714	1014.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.037	1	59.129	58.629	59.629	0.091301								0	0	0	0.19534	1	14345	14345		24.021	2.2739	1				27068	4767	15483	15484	33668	33668					0.05302903520566815
LSNLAGQAAPG	11	Unmodified	_LSNLAGQAAPG_					0	0	0		ENST00000478416.1_1_17:18157237-18162004:-|nuORF	ENST00000478416.1_1_17:18157237-18162004:-|nuORF	ENST00000478416.1_1_17:18157237-18162004:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3136291503906	2	499.766906	997.519259	-0.083746	-4.1853E-05	-1.5314	-0.00076533	-1.6151	-0.00080718	499.7663856741978	25.203	0.67263	25.172	24.953	25.626	-0.03141					33	23	3	0	0	0	0.26879	1	4052	4052		34.932	12.196	1	82465			27069	10975	15484	15485	33669	33669					0.020399819208023473
LSNLKVLN	8	Unmodified	_LSNLKVLN_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;nc|ENSG00000124177|Q8TD26-2|CHD6;nc|ENSG00000124177|Q8TD26-3|CHD6	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2633056640625	2	450.779285	899.544017	-0.055556	-2.5044E-05	-0.50538	-0.00022781	-0.56093	-0.00025286	450.77900789685583	22.887	0.25729	22.799	22.736	22.993	-0.08761					10	8	2	0	0	0	0.3366	1	3336	3336		18.135	0	1	20739			27070	3137	15485	15486	33670	33670					0.09022661794176656
LSNLRYLNL	9	Unmodified	_LSNLRYLNL_					0	0	0		ENSG00000148948|ENST00000528697|LRRC4C	ENSG00000148948|ENST00000528697|LRRC4C	ENSG00000148948|ENST00000528697|LRRC4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.269775390625	2	553.321848	1104.62914	0.40956	0.00022662	-0.12864	-7.1181E-05	0.28092	0.00015544	553.3216908734604	63.413	0.19157	63.413	63.34	63.532	0					12	6	3	0	0	0	0.15943	1	15728	15728		26.268	0	1	317240			27071	4837	15486	15487	33671	33671					0.08101407259982807
LSNNGQVK	8	Unmodified	_LSNNGQVK_					0	0	0		ENST00000528974.1_1_11:104901171-104901913:-|nuORF	ENST00000528974.1_1_11:104901171-104901913:-|nuORF	ENST00000528974.1_1_11:104901171-104901913:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.88812255859375	2	430.235242	858.45593	-0.27134	-0.00011674	1.1511	0.00049526	0.8798	0.00037852	430.23512543408077	23.483	0.59258	23.483	23.077	23.669	0					26	20	2	0	0	0	0.34337	1	3381	3381		5.2307	2.9279	1	42165			27072	11593	15487	15488	33672	33672					0.02104041203574525
LSNQQQLTV	9	Unmodified	_LSNQQQLTV_					0	0	0			REV__ENSG00000132005|ENST00000254325|RFX1	REV__ENSG00000132005|ENST00000254325|RFX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.29052734375	2	515.780013	1029.54547	-0.041731	-2.1524E-05	0.25571	0.00013189	0.21398	0.00011037	515.7801945548871	29.88	0.58193	29.893	29.564	30.146	0.013474					23	19	2	0	0	0	0.16283	1	5408	5408		29.082	2.1979	1	215700	+		27073	15546	15488	15489	33673	33673					0.031882510922514484
LSNRGPPPATL	11	Unmodified	_LSNRGPPPATL_					0	0	0		ENST00000415557.1_1_10:90750861-90751086:-|nuORF	ENST00000415557.1_1_10:90750861-90751086:-|nuORF	ENST00000415557.1_1_10:90750861-90751086:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.817138671875	2	561.81693	1121.61931	0.41918	0.0002355	-1.01	-0.00056742	-0.5908	-0.00033192	561.816688159977	38.075	0.90908	38.166	37.849	38.758	0.090881					76	32	4	0	0	0	0.37585	1	7902	7902		14.405	1.3629	1	577820			27074	10312	15489	15490	33674	33674					0.06336219254603748
LSNSLDTL	8	Unmodified	_LSNSLDTL_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.737060546875	2	431.729458	861.444362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.752	1	52.802	52.302	53.302	0.050575								0	0	0	0.33432	1	12406	12406		21.747	0	1		+		27075	17772	15490	15491	33675	33675					0.008097993895603395
LSNSTLKF	8	Unmodified	_LSNSTLKF_					0	0	0		nc|ENSG00000138722|Q13201-2|MMRN1;ENSG00000138722|ENST00000264790|MMRN1	nc|ENSG00000138722|Q13201-2|MMRN1	nc|ENSG00000138722|Q13201-2|MMRN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.9148864746094	2	455.255643	908.496732	0.28972	0.0001319	-0.40638	-0.00018501	-0.11666	-5.311E-05	455.2554184639626	38.727	0.69427	38.826	38.38	39.074	0.099403					49	24	3	0	0	0	0.34247	1	8144	8144		8.5933	0	1	273590			27076	4183	15491	15492	33676	33676					0.03882382523192973
LSNTQFIEN	9	Unmodified	_LSNTQFIEN_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;ENST00000492914.1_1_10:51829372-51845265:+|nuORF	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2998657226562	2	533.264196	1064.51384	0.3429	0.00018285	1.206	0.00064312	1.5489	0.00082597	533.2641981724456	24.578	0.49656	24.505	24.267	24.763	-0.072559					31	16	3	0	0	0	0.2524	1	3804	3804		11.495	0	1	84972			27077	1481	15492	15493	33677	33677					-0.015837416616705013
LSNVLMTLT	9	Unmodified	_LSNVLMTLT_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.77691650390625	2	496.27826	990.541968	0.4668	0.00023166	0.24333	0.00012076	0.71013	0.00035242	496.27846356076844	38.569	0.40104	38.666	38.437	38.838	0.097527					27	14	2	0	0	0	0.16284	1	8066	8066		24.021	5.8742	1	812080			27078	1676	15493	15494	33678	33678					0.046318649940758405
LSNVLQQVK	9	Unmodified	_LSNVLQQVK_					0	0	0		ENSG00000084674|ENST00000233242|APOB;APOB|p.G3575Afs*48|1|0.18|ENSG00000084674|chr2:21006144-21006144|C/-|frameshift_variant	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2603149414062	2	514.808574	1027.60259	0.20494	0.0001055	0.35211	0.00018127	0.55704	0.00028677	514.8088148324794	37.518	0.44326	37.611	37.423	37.866	0.093018					30	16	2	0	0	0	0.15943	1	7727	7727		39.95	5.548	1	284320			27079	1244	15494	15495	33679	33679					0.0898971836866167
LSPAELLSAF	10	Unmodified	_LSPAELLSAF_					0	0	0		LTR1F1_dup64|chr4:69041687-69042422:+|2.255451106523636|0.1032861701613835|4.45|537.0|29|2|anti-sense	LTR1F1_dup64|chr4:69041687-69042422:+|2.255451106523636|0.1032861701613835|4.45|537.0|29|2|anti-sense	LTR1F1_dup64|chr4:69041687-69042422:+|2.255451106523636|0.1032861701613835|4.45|537.0|29|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.8035888671875	2	524.289682	1046.56481	0.16473	8.6366E-05	-2.2065	-0.0011569	-2.0418	-0.0010705	524.2884093379721	25.516	0.44344	25.485	25.294	25.738	-0.031408					19	15	2	0	0	0	0.31691	1	4068	4068		9.3831	2.66	1	43446			27080	12511	15495	15496	33680	33680					0.04339207383191024
LSPAISQIRII	11	Unmodified	_LSPAISQIRII_					0	0	0			REV__ENSG00000198793|ENST00000361445|MTOR	REV__ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.55670166015625	3	404.255446	1209.74451	-0.38136	-0.00015417	0.93452	0.00037778	0.55315	0.00022362	404.2558775933411	23.039	0.1138	22.952	22.853	22.967	-0.087608					6	3	2	0	0	0	0.3325	1	3319	3319		2.2527	0	1	10308	+		27081	18863	15496	15497	33681	33681					0.14802511390985273
LSPALLQQQL	10	Unmodified	_LSPALLQQQL_					0	0	0		nc|ENSG00000147804|Q6P5W5-2|SLC39A4;ENSG00000147804|ENST00000301305|SLC39A4	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	nc|ENSG00000147804|Q6P5W5-2|SLC39A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7698364257812	2	555.829506	1109.64446	0.26941	0.00014975	-0.37214	-0.00020684	-0.10272	-5.7096E-05	555.8293078410485	69.338	0.51481	69.404	69.094	69.609	0.06604					22	17	2	0	0	0	0.31143	1	17485	17485		12.241	0	1	130980			27082	4785	15497	15498	33682	33682					0.09402274057174509
LSPARAFR	8	Unmodified	_LSPARAFR_					0	0	0			REV__nc|ENSG00000152689|Q8IV61-2|RASGRP3	REV__nc|ENSG00000152689|Q8IV61-2|RASGRP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.756103515625	2	459.269419	916.524284	0.090356	4.1498E-05	-2.1855	-0.0010037	-2.0952	-0.00096225	459.2688881042506	32.853	0.58157	32.908	32.73	33.312	0.055309					26	20	2	0	0	0	0.42077	1	6313	6313		15.847	2.3393	1	68138	+		27083	16592	15498	15499	33683	33683					0.06268330574084757
LSPAVRVK	8	Unmodified	_LSPAVRVK_					0	0	0		nc|ENSG00000108384|O43502-2|RAD51C;ENSG00000108384|ENST00000337432|RAD51C	nc|ENSG00000108384|O43502-2|RAD51C	nc|ENSG00000108384|O43502-2|RAD51C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.8821105957031	2	435.281995	868.549437	-0.086281	-3.7556E-05	-0.012118	-5.2747E-06	-0.098398	-4.2831E-05	435.2818971324187	23.777	0.57538	23.704	23.422	23.997	-0.072559					36	19	3	0	0	0	0.3408	1	3560	3560		10.074	0	1	96793			27084	2181	15499	15500	33684	33684					0.10990385376669565
LSPCPVQGEVE	11	Unmodified	_LSPCPVQGEVE_					0	0	0			REV__ENST00000447299.1_1_3:15093950-15094835:-|nuORF	REV__ENST00000447299.1_1_3:15093950-15094835:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.26513671875	2	579.278989	1156.54342	0.2672	0.00015479	0.3065	0.00017755	0.57371	0.00033234	579.2792070138476	27.01	0.9863	26.998	26.541	27.527	-0.011562					71	32	3	0	0	0	0.42762	1	4616	4616		7.609	1.4032	1	252300	+		27085	15506	15500	15501	33685	33685					-0.028585457078406762
LSPDGDDPIE	10	Unmodified	_LSPDGDDPIE_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2374267578125	2	529.237844	1056.46113	0.1997	0.00010569	-0.70582	-0.00037355	-0.50613	-0.00026786	529.2374686094555	61.217	0.97099	61.314	60.896	61.867	0.096985					59	35	2	0	0	0	0.30958	1	15014	15014		19.257	19.257	1	1305700	+		27086	18850	15501	15502	33686	33686					-0.06483744515116996
LSPDGDDPIE	10	Unmodified	_LSPDGDDPIE_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2376708984375	2	529.237844	1056.46113	0.31834	0.00016848	-0.91123	-0.00048226	-0.59289	-0.00031378	529.237368334247	61.295	0.95662	61.285	60.888	61.845	-0.0094566					67	34	3	0	0	0	0.34325	1	15051	15051		13.906	13.906	1	1219400	+		27087	18850	15501	15502	33687	33687					-0.06483744515116996
LSPDPHLLV	9	Unmodified	_LSPDPHLLV_					0	0	0			REV__ENST00000400068.7_2_20:1918826-1919048:+|nuORF	REV__ENST00000400068.7_2_20:1918826-1919048:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.3131103515625	2	495.784567	989.554582	0.65139	0.00032295	0.36583	0.00018137	1.0172	0.00050432	495.7845243793055	53.918	0.54039	53.918	53.622	54.162	0					41	19	4	0	0	0	0.1659	1	12810	12810		21.747	0	1	704560	+		27088	20699	15502	15503	33688	33688					0.0593864444861083
LSPDPHLLV	9	Unmodified	_LSPDPHLLV_					0	0	0			REV__ENST00000400068.7_2_20:1918826-1919048:+|nuORF	REV__ENST00000400068.7_2_20:1918826-1919048:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3130798339844	2	495.784567	989.554582	0.37631	0.00018657	-0.0081791	-4.055E-06	0.36813	0.00018252	495.7844585949428	53.834	0.47027	53.891	53.638	54.108	0.056259					39	17	3	0	0	0	0.12846	1	12791	12791		21.747	0	1	881200	+		27089	20699	15502	15503	33689	33689					0.0593864444861083
LSPDPHLLV	9	Unmodified	_LSPDPHLLV_					0	0	0			REV__ENST00000400068.7_2_20:1918826-1919048:+|nuORF	REV__ENST00000400068.7_2_20:1918826-1919048:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3131103515625	2	495.784567	989.554582	0.50127	0.00024852	0.24237	0.00012016	0.74363	0.00036868	495.78435217352745	54.04	0.54416	54.024	53.738	54.282	-0.015923					46	19	3	0	0	0	0.12846	1	12817	12817		36.044	0	1	781150	+		27090	20699	15502	15503	33690	33690					0.0593864444861083
LSPDTNKKN	9	Unmodified	_LSPDTNKKN_					0	0	0			REV__ENST00000329463.9_3_3:154018851-154018914:-|nuORF	REV__ENST00000329463.9_3_3:154018851-154018914:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.77435302734375	2	508.772188	1015.52982	0.51268	0.00026084	2.8601	0.0014551	3.3728	0.001716	508.77415116626935	45.516	0.53958	45.576	45.253	45.792	0.059834					55	18	5	0	0	0	0.2719	1	10181	10181		13.042	0.80181	1	817950	+		27091	20029	15503	15504	33691	33691					0.022679645752418764
LSPFNLIRR	9	Unmodified	_LSPFNLIRR_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;SCN8A|p.F769Lfs*11|1|0.04|ENSG00000196876|chr12:51751529-51751530|-/ATTAA|frameshift_variant;nc|ENSG00000196876|Q9UQD0-4|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.811279296875	2	558.337833	1114.66111	0.28912	0.00016143	0.02783	1.5539E-05	0.31695	0.00017696	558.3377258480766	42.358	0.62328	42.444	42.211	42.834	0.085197					40	22	2	0	0	0	0.23784	1	9151	9151		19.257	1.1106	1	748670			27092	7910	15504	15505	33692	33692					0.1083681973379953
LSPGGASAAL	10	Unmodified	_LSPGGASAAL_					0	0	0		ENSG00000178403|ENST00000313341|NEUROG2	ENSG00000178403|ENST00000313341|NEUROG2	ENSG00000178403|ENST00000313341|NEUROG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.5747375488281	2	422.232168	842.449782	-0.23107	-9.7567E-05	-1.0033	-0.00042363	-1.2344	-0.00052119	422.2316690038343	19.205	0.89883	19.205	18.978	19.877	0					49	31	2	0	0	0	0.31482	1	2172	2172		11.64	0	1	74629			27093	7053	15505	15506	33693	33693					0.022255229720371972
LSPGTDPAADL	11	Unmodified	_LSPGTDPAADL_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3001708984375	2	528.764029	1055.5135	0.44527	0.00023544	-1.4914	-0.00078858	-1.0461	-0.00055314	528.7632572184234	52.108	0.40974	52.158	51.9	52.309	0.050575					22	14	2	0	0	0	0.27304	1	12153	12153		26.268	16.194	1	196800			27094	2585	15506	15507	33694	33694					-0.012031613815224773
LSPHRPVRWR	10	Unmodified	_LSPHRPVRWR_					0	0	0			REV__ENST00000258411.7_1_2:219745349-219745679:+|nuORF	REV__ENST00000258411.7_1_2:219745349-219745679:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.26910400390625	3	435.254662	1302.74216	-0.20111	-8.7534E-05	-1.0761	-0.00046838	-1.2772	-0.00055591	435.25477959607474	17.071	0.25268	16.953	16.828	17.081	-0.11739					9	8	2	0	0	0	0.38952	1	1529	1529		5.4027	0.99656	1	23393	+		27095	19568	15507	15508	33695	33695					0.1028952049655345
LSPIKTLTKII	11	Unmodified	_LSPIKTLTKII_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5606994628906	3	409.607596	1225.80096	0.26088	0.00010686	0.41162	0.0001686	0.6725	0.00027546	409.60774170331797	60.422	0.54841	60.422	60.331	60.88	0					21	19	2	0	0	0	0.3325	1	14775	14775		2.2527	0	1	319250	+		27096	15035	15508	15509	33696	33696					0.19709139227666128
LSPIRGIFK	9	Unmodified	_LSPIRGIFK_					0	0	0			REV__ENSG00000170923|ENST00000641081|OR7G2	REV__ENSG00000170923|ENST00000641081|OR7G2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.8240966796875	2	515.824027	1029.6335	0.33009	0.00017027	-0.084312	-4.349E-05	0.24578	0.00012678	515.8238767063748	44.486	0.59787	44.561	44.285	44.883	0.075047					44	21	3	0	0	0	0.14786	1	9855	9855		31.268	0	1	472810	+		27097	17608	15509	15510	33697	33697					0.11986916473574638
LSPIRGIFK	9	Unmodified	_LSPIRGIFK_					0	0	0			REV__ENSG00000170923|ENST00000641081|OR7G2	REV__ENSG00000170923|ENST00000641081|OR7G2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.7982788085938	2	515.824027	1029.6335	0.33009	0.00017027	-0.084312	-4.349E-05	0.24578	0.00012678	515.8238767063748	44.486	0.59787	44.561	44.285	44.883	0.075047					44	21	3	0	0	0	0.24993	1	9906	9906		8.7454	0	1	472810	+		27098	17608	15509	15510	33698	33698					0.11986916473574638
LSPISPNFFK	10	Unmodified	_LSPISPNFFK_					0	0	0			REV__ENSG00000119927|ENST00000348367|GPAM	REV__ENSG00000119927|ENST00000348367|GPAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.8370361328125	2	575.318774	1148.623	0.41718	0.00024001	-0.50293	-0.00028935	-0.085751	-4.9334E-05	575.3185832561255	63.119	0.68525	63.215	62.854	63.539	0.095722					55	24	3	0	0	0	0.2266	1	15603	15603		41.84	1.8899	1	508080	+		27099	15065	15510	15511	33699	33699					0.054628890284675435
LSPISPNFFK	10	Unmodified	_LSPISPNFFK_					0	0	0			REV__ENSG00000119927|ENST00000348367|GPAM	REV__ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3184814453125	2	575.318774	1148.623	0.27456	0.00015796	-0.24073	-0.0001385	0.03383	1.9463E-05	575.3186268698705	63.219	0.73159	63.211	62.86	63.592	-0.0085526					62	26	3	0	0	0	0.12843	1	15611	15611		41.84	9.0539	1	461230	+		27100	15065	15510	15511	33700	33700					0.054628890284675435
LSPKKAPA	8	Unmodified	_LSPKKAPA_					0	0	0		ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.8961181640625	2	406.255446	810.496338	0.33507	0.00013613	-0.38757	-0.00015745	-0.052491	-2.1325E-05	406.25518778423844	36.715	0.18656	36.808	36.764	36.951	0.093014					9	6	2	0	0	0	0.34272	1	7502	7502		4.3292	0	1	53704			27101	7875	15511	15512	33701	33701					0.08351007593978466
LSPKLNAIA	9	Unmodified	_LSPKLNAIA_					0	0	0			REV__ENST00000464037.5_1_21:33825516-33887497:+|nuORF	REV__ENST00000464037.5_1_21:33825516-33887497:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.80072021484375	2	463.78711	925.559667	0.10466	4.8538E-05	0.3142	0.00014572	0.41886	0.00019426	463.7873356184067	36.027	0.5097	36.027	35.773	36.282	0					28	18	2	0	0	0	0.23767	1	7314	7314		18.146	1.0335	1	406120	+		27102	17354	15512	15513	33702	33702					0.09390948311215652
LSPLLTLLG	9	Unmodified	_LSPLLTLLG_					0	0	0			REV__ENST00000569326.2_1_8:145724500-145725055:-|nuORF	REV__ENST00000569326.2_1_8:145724500-145725055:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.8008117675781	2	463.799686	925.584819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.328	1	36.411	35.911	36.911	0.082355								0	0	0	0.2362	1	7369	7369		10.824	2.9138	1		+		27103	22403	15513	15514	33703	33703					0.11905003113815837
LSPLLTLLG	9	Unmodified	_LSPLLTLLG_					0	0	0			REV__ENST00000569326.2_1_8:145724500-145725055:-|nuORF	REV__ENST00000569326.2_1_8:145724500-145725055:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.80084228515625	2	463.799686	925.584819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.477	1	36.559	36.059	37.059	0.082355								0	0	0	0.2362	1	7415	7415		10.824	3.5347	1		+		27104	22403	15513	15514	33704	33704					0.11905003113815837
LSPLMRLN	8	Unmodified	_LSPLMRLN_					0	0	0		FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant;ENSG00000188352|ENST00000338382|FOCAD	FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant	FOCAD|p.P1713Tfs*24|1|0.31|ENSG00000188352|chr9:20990253-20990254|-/G|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2762451171875	2	472.273312	942.532072	0.25939	0.0001225	2.7071	0.0012785	2.9665	0.001401	472.27458701651364	32.34	1.3331	32.394	31.709	33.042	0.054371					81	47	3	0	0	0	0.20518	1	5971	5971		42.095	2.1372	1	1025700			27105	7745	15514	15515	33705	33705					0.05850721779347623
LSPLQLQK	8	Unmodified	_LSPLQLQK_					0	0	0		nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6	nc|ENSG00000110693|P35712-3|SOX6	nc|ENSG00000110693|P35712-3|SOX6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.80078125	2	463.78711	925.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.121	1	36.204	35.704	36.704	0.082355								0	0	0	0.35663	1	7305	7305		11.64	0	1				27106	2322	15515	15516	33706	33706					0.0939094831123839
LSPLQLQK	8	Unmodified	_LSPLQLQK_					0	0	0		nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6	nc|ENSG00000110693|P35712-3|SOX6	nc|ENSG00000110693|P35712-3|SOX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.80059814453125	2	463.78711	925.559667	0.36219	0.00016798	-0.24098	-0.00011176	0.12121	5.6214E-05	463.78709599598807	35.912	0.60829	35.998	35.762	36.371	0.08625					30	21	2	0	0	0	0.30517	1	7318	7318		30.225	1.738	1	414800			27107	2322	15515	15516	33707	33707					0.0939094831123839
LSPNRPRKF	9	Unmodified	_LSPNRPRKF_					0	0	0		ENST00000472233.1_1_1:153600008-153604516:-|nuORF	ENST00000472233.1_1_1:153600008-153604516:-|nuORF	ENST00000472233.1_1_1:153600008-153604516:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.282470703125	2	557.827632	1113.64071	0.2396	0.00013365	-0.47107	-0.00026277	-0.23147	-0.00012912	557.827396838213	39.694	0.44489	39.794	39.565	40.01	0.099407					25	15	2	0	0	0	0.24913	1	8363	8363		4.3292	0	1	187680			27108	10890	15516	15517	33708	33708					0.08843649073969573
LSPPGRELR	9	Unmodified	_LSPPGRELR_					0	0	0			REV__ENST00000396912.1_1_7:5085626-5085824:+|nuORF	REV__ENST00000396912.1_1_7:5085626-5085824:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7985229492188	2	512.79854	1023.58253	0.27036	0.00013864	-0.18172	-9.3187E-05	0.088638	4.5453E-05	512.7985748216419	24.53	0.67882	24.53	24.194	24.872	0					46	22	3	0	0	0	0.24688	1	3755	3755		14.838	4.0143	1	102490	+		27109	20660	15517	15518	33709	33709					0.0716796742869974
LSPPSLWK	8	Unmodified	_LSPPSLWK_					0	0	0		ENST00000372444.6_2_6:43474120-43474228:+|nuORF	ENST00000372444.6_2_6:43474120-43474228:+|nuORF	ENST00000372444.6_2_6:43474120-43474228:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.8006286621094	2	464.268553	926.522553	0.15023	6.9746E-05	-0.62969	-0.00029235	-0.47947	-0.0002226	464.2680273288799	36.668	0.66982	36.668	36.511	37.181	0					32	23	2	0	0	0	0.3366	1	7461	7461		18.135	2.2878	1	220830			27110	9842	15518	15519	33710	33710					0.05635276765474373
LSPQELQAF	9	Unmodified	_LSPQELQAF_					0	0	0		ENSG00000183709|ENST00000331982|IFNL2;ENSG00000197110|ENST00000413851|IFNL3	ENSG00000183709|ENST00000331982|IFNL2	ENSG00000183709|ENST00000331982|IFNL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8014526367188	2	516.771657	1031.52876	0.41382	0.00021385	2.1923	0.0011329	2.6061	0.0013468	516.7734254247587	30.529	0.25931	30.529	30.359	30.619	0					16	8	3	0	0	0	0.24993	1	5571	5571		13.042	5.1323	1	46592			27111	7391	15519	15520	33711	33711					0.014257502063173888
LSPQPEPEPM	10	Unmodified	_LSPQPEPEPM_					0	0	0		nc|ENSG00000187556|P60323|NANOS3;ENSG00000187556|ENST00000339133|NANOS3	nc|ENSG00000187556|P60323|NANOS3	nc|ENSG00000187556|P60323|NANOS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3169555664062	2	562.768257	1123.52196	0.58621	0.0003299	0.81076	0.00045627	1.397	0.00078617	562.7687125428334	36.183	0.42037	36.269	36.14	36.561	0.08625					18	14	2	0	0	0	0.30586	1	7293	7293		13.906	0	1	204110			27112	7692	15520	15521	33712	33712					-0.03485930736565024
LSPREFIIL	9	Unmodified	_LSPREFIIL_					0	0	0			REV__nc|ENSG00000104044|Q04671-2|OCA2	REV__nc|ENSG00000104044|Q04671-2|OCA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.298095703125	2	544.329142	1086.64373	0.76788	0.00041798	-0.0098346	-5.3533E-06	0.75804	0.00041262	544.3291383784674	43.215	0.49912	43.292	43.1	43.599	0.077515					23	17	2	0	0	0	0.25622	1	9544	9544		1.6526	0	1	206610	+		27113	22921	15521	15522	33713	33713					0.10387479408132094
LSPRGSLL	8	Unmodified	_LSPRGSLL_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.89642333984375	2	421.758352	841.502152	-0.25111	-0.00010591	-0.32573	-0.00013738	-0.57684	-0.00024329	421.7581991805397	41.193	0.42179	41.193	40.96	41.382	0					26	15	2	0	0	0	0.32537	1	8819	8819		24.021	5.8742	1	181760			27114	6980	15522	15523	33714	33714					0.0750610610567719
LSPRLLEV	8	Unmodified	_LSPRLLEV_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.F753Sfs*5|1|0.07|ENSG00000173193|chr3:122700811-122700812|-/C|frameshift_variant;PARP14|p.P265Lfs*7|1|0.33|ENSG00000173193|chr3:122695616-122695616|T/-|frameshift_variant	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.8006896972656	2	463.78711	925.559667	0.10466	4.8538E-05	0.3142	0.00014572	0.41886	0.00019426	463.7873356184067	36.027	0.5097	36.027	35.773	36.282	0					28	18	2	0	0	0	0.40115	1	7338	7338		19.257	3.4098	1	406120			27115	6700	15523	15524	33715	33715					0.09390948311227021
LSPRLSLLWVP	11	Unmodified	_LSPRLSLLWVP_					0	0	0		ENST00000498544.5_1_1:53362194-53370641:-|nuORF	ENST00000498544.5_1_1:53362194-53370641:-|nuORF	ENST00000498544.5_1_1:53362194-53370641:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.8895874023438	2	640.889898	1279.76524	0.35656	0.00022852	-0.086906	-5.5697E-05	0.26966	0.00017282	640.8897064731815	74.061	0.64688	74.061	73.86	74.507	0					50	21	3	0	0	0	0.40826	1	18941	18941		10.151	0	1	1666800			27116	11255	15524	15525	33716	33716					0.13655101770632427
LSPRNMNC	8	Unmodified	_LSPRNMNC_					0	0	0		ENST00000282382.8_2_5:114915695-114915866:-|nuORF	ENST00000282382.8_2_5:114915695-114915866:-|nuORF	ENST00000282382.8_2_5:114915695-114915866:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7151794433594	2	467.715304	933.416056	-0.11334	-5.3011E-05	-0.031575	-1.4768E-05	-0.14492	-6.7779E-05	467.7152002892676	18.317	0.71248	18.317	18.077	18.79	0					38	24	2	0	0	0	0.34272	1	1936	1936		7.9102	0.62092	1	135960			27117	9126	15525	15526	33717	33717					-0.05331545063017984
LSPRNMNC	8	Unmodified	_LSPRNMNC_					0	0	0		ENST00000282382.8_2_5:114915695-114915866:-|nuORF	ENST00000282382.8_2_5:114915695-114915866:-|nuORF	ENST00000282382.8_2_5:114915695-114915866:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7148742675781	2	467.715304	933.416056	-0.12863	-6.0161E-05	-0.62106	-0.00029048	-0.74969	-0.00035064	467.71520335966153	18.448	0.59242	18.39	18.171	18.763	-0.058174					44	20	4	0	0	0	0.34039	1	1928	1928		15.847	1.9411	1	172610			27118	9126	15525	15526	33718	33718					-0.05331545063017984
LSPRPSRLI	9	Unmodified	_LSPRPSRLI_					0	0	0		ENST00000326047.8_1_3:44815907-44819655:+|nuORF	ENST00000326047.8_1_3:44815907-44819655:+|nuORF	ENST00000326047.8_1_3:44815907-44819655:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.77734375	2	519.824558	1037.63456	0.17063	8.8695E-05	-0.074789	-3.8877E-05	0.095836	4.9818E-05	519.8245598760327	41.078	0.46407	41.175	40.933	41.397	0.096622					28	16	2	0	0	0	0.25622	1	8877	8877		7.2892	2.5332	1	243290			27119	9411	15526	15527	33719	33719					0.11725130842478393
LSPRPSRLI	9	Unmodified	_LSPRPSRLI_					0	0	0		ENST00000326047.8_1_3:44815907-44819655:+|nuORF	ENST00000326047.8_1_3:44815907-44819655:+|nuORF	ENST00000326047.8_1_3:44815907-44819655:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	519.824558	1037.63456	0.27413	0.0001425	-0.50741	-0.00026376	-0.23328	-0.00012126	519.8241943983635	41.447	0.40512	41.447	41.125	41.531	0	0.15069	-0.00034096	NaN	7.2892	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	423040			27120	9411	15526	15527							0.11725130842478393
LSPRPSRLI	9	Unmodified	_LSPRPSRLI_					0	0	0		ENST00000326047.8_1_3:44815907-44819655:+|nuORF	ENST00000326047.8_1_3:44815907-44819655:+|nuORF	ENST00000326047.8_1_3:44815907-44819655:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	519.824558	1037.63456	0.29716	0.00015447	-0.043374	-2.2547E-05	0.25378	0.00013192	519.8244732121419	41.177	0.47565	41.268	40.927	41.403	0.090248	-0.029096	0.00014147	NaN	7.2892	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337710			27121	9411	15526	15527							0.11725130842478393
LSPRRVLP	8	Unmodified	_LSPRRVLP_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.25311279296875	2	469.300719	936.586885	0.66292	0.00031111	0.47345	0.00022219	1.1364	0.0005333	469.3008803169334	33.706	0.49943	33.772	33.566	34.066	0.06636					27	17	2	0	0	0	0.3366	1	6599	6599		18.135	13.379	1	166750	+		27122	14606	15527	15528	33720	33720					0.11605476642262147
LSPRRVLP	8	Unmodified	_LSPRRVLP_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	469.300719	936.586885	0.37097	0.0001741	0.72832	0.0003418	1.0993	0.0005159	469.3009716360797	33.863	0.45922	33.863	33.589	34.048	0	0.082006	-7.1294E-05	NaN	12.532	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124160	+		27123	14606	15527	15528							0.11605476642262147
LSPRRVLP	8	Unmodified	_LSPRRVLP_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	469.300719	936.586885	0.058604	2.7503E-05	1.1004	0.00051643	1.159	0.00054394	469.3011964820391	33.641	0.41721	33.708	33.549	33.967	0.066704	-0.073078	0.00027797	NaN	12.532	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146380	+		27124	14606	15527	15528							0.11605476642262147
LSPRTLQL	8	Unmodified	_LSPRTLQL_					0	0	0			REV__ENST00000562941.1_1_16:29473130-29474884:+|nuORF	REV__ENST00000562941.1_1_16:29473130-29474884:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.28466796875	2	464.284734	926.554916	-0.60502	-0.0002809	0.083201	3.8629E-05	-0.52181	-0.00024227	464.2846901455692	60.159	0.45668	60.254	60.019	60.475	0.095093					31	16	3	0	0	0	0.18275	1	14724	14724		46.021	8.047	1	609520	+		27125	22322	15528	15529	33721	33721					0.0887006416847953
LSPSLWPLMPS	11	Unmodified	_LSPSLWPLMPS_					0	0	0		ENST00000450269.5_1_1:45274176-45274422:+|nuORF	ENST00000450269.5_1_1:45274176-45274422:+|nuORF	ENST00000450269.5_1_1:45274176-45274422:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2324523925781	3	409.886253	1226.63693	-0.027918	-1.1443E-05	3.2791	0.001344	3.2512	0.0013326	409.88741664709227	26.432	0.38926	26.394	26.1	26.489	-0.038671					20	13	2	0	0	0	0.38623	1	4376	4376		7.0371	0	1	71316			27126	10637	15529	15530	33722	33722					0.03267798465253691
LSPSPRII	8	Unmodified	_LSPSPRII_					0	0	0			REV__ENSG00000158480|ENST00000289431|SPATA2	REV__ENSG00000158480|ENST00000289431|SPATA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.75006103515625	2	441.774003	881.533452	0.22481	9.9317E-05	2.0102	0.00088807	2.235	0.00098739	441.77458119454377	52.567	0.62344	52.617	52.254	52.878	0.050575					31	22	2	0	0	0	0.31088	1	12270	12270		28.487	0	1	242990	+		27127	16814	15530	15531	33723	33723					0.08794679139748496
LSPSPRII	8	Unmodified	_LSPSPRII_					0	0	0			REV__ENSG00000158480|ENST00000289431|SPATA2	REV__ENSG00000158480|ENST00000289431|SPATA2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	441.774003	881.533452	0.23162	0.00010232	2.1202	0.00093665	2.3518	0.001039	441.77487817652684	52.549	0.54969	52.549	52.382	52.932	0	-0.034214	2.8087E-05	NaN	34.102	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215980	+		27128	16814	15530	15531							0.08794679139748496
LSPSRTKRL	9	Unmodified	_LSPSRTKRL_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2855834960938	2	529.327465	1056.64038	-0.9514	-0.0005036	1.0778	0.00057051	0.12639	6.6904E-05	529.3277358102177	34.536	0.31771	34.611	34.496	34.814	0.075306					15	11	2	0	0	0	0.25612	1	6801	6801		8.1555	3.2585	1	78113			27129	4266	15531	15532	33724	33724					0.11432229354136325
LSPSVISAL	9	Unmodified	_LSPSVISAL_					0	0	0			REV__nc|ENSG00000163645|Q7L0X2-2|ERICH6	REV__nc|ENSG00000163645|Q7L0X2-2|ERICH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.7658996582031	2	443.765843	885.517133	0.50465	0.00022395	-0.3016	-0.00013384	0.20305	9.0108E-05	443.76562305512255	65.835	1.1396	65.835	65.405	66.545	0					115	40	4	0	0	0	0.01083	1	16453	16453		78.149	0	1	3640500	+		27130	17076	15532	15533	33725	33725					0.0697955318298682
LSPSVISAL	9	Unmodified	_LSPSVISAL_					0	0	0			REV__nc|ENSG00000163645|Q7L0X2-2|ERICH6	REV__nc|ENSG00000163645|Q7L0X2-2|ERICH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.76593017578125	2	443.765843	885.517133	0.29446	0.00013067	-0.084773	-3.7619E-05	0.20969	9.3052E-05	443.76572334845457	65.672	1.1693	65.761	65.38	66.549	0.088882					109	42	4	0	0	0	0.0046874	1	16416	16416		88.904	7.2905	1	3453900	+		27131	17076	15532	15533	33726	33726					0.0697955318298682
LSPSVISAL	9	Unmodified	_LSPSVISAL_					0	0	0			REV__nc|ENSG00000163645|Q7L0X2-2|ERICH6	REV__nc|ENSG00000163645|Q7L0X2-2|ERICH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.7658996582031	2	443.765843	885.517133	0.41556	0.00018441	-0.19024	-8.4421E-05	0.22532	9.999E-05	443.76567479214384	65.78	1.1415	65.768	65.372	66.513	-0.011337					112	41	4	0	0	0	0.0085732	2	16393	16393;16486		81.613	3.6287	1	3634600	+		27132	17076	15532	15533	33727;33728	33727					0.0697955318298682
LSPTLLGRQNK	11	Unmodified	_LSPTLLGRQNK_					0	0	0			REV__ENST00000566196.5_1_16:8896110-8896212:+|nuORF	REV__ENST00000566196.5_1_16:8896110-8896212:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.2167663574219	3	409.5787	1225.71427	-0.26868	-0.00011005	-1.2278	-0.00050286	-1.4964	-0.00061291	409.5783161670691	27.636	0.66031	27.624	27.29	27.95	-0.01156					40	22	2	0	0	0	0.33122	1	4624	4624		2.4348	1.808	1	265080	+		27133	22365	15533	15534	33729	33729					0.11044152725798995
LSPVLINI	8	Unmodified	_LSPVLINI_					0	0	0			REV__ENSG00000255298|ENST00000641992|OR8G5	REV__ENSG00000255298|ENST00000641992|OR8G5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7787780761719	2	434.778754	867.542954	0.13794	5.9971E-05	-0.50622	-0.00022009	-0.36829	-0.00016012	434.7786871497079	79.057	0.8793	79.119	78.739	79.618	0.061417					71	38	3	0	0	0	0.22	1	20493	20493		39.957	5.8549	1	266860	+		27134	19242	15534	15535	33730	33730					0.10388447425270897
LSPVLINI	8	Unmodified	_LSPVLINI_					0	0	0			REV__ENSG00000255298|ENST00000641992|OR8G5	REV__ENSG00000255298|ENST00000641992|OR8G5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	434.778754	867.542954	0.083655	3.6372E-05	-0.43058	-0.00018721	-0.34693	-0.00015084	434.77876409027306	79.143	0.94772	79.143	78.645	79.592	0	-0.0077588	8.8046E-05	NaN	39.957	71	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276570	+		27135	19242	15534	15535							0.10388447425270897
LSPVLINI	8	Unmodified	_LSPVLINI_					0	0	0			REV__ENSG00000255298|ENST00000641992|OR8G5	REV__ENSG00000255298|ENST00000641992|OR8G5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	434.778754	867.542954	0.13794	5.9971E-05	-0.50622	-0.00022009	-0.36829	-0.00016012	434.7786871497079	79.057	0.8793	79.119	78.739	79.618	0.061417	-0.032072	2.2272E-05	NaN	39.957	71	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266860	+		27136	19242	15534	15535							0.10388447425270897
LSPVLNLWKKL	11	Unmodified	_LSPVLNLWKKL_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2231750488281	3	437.611341	1309.81219	-0.082938	-3.6295E-05	-1.402	-0.00061354	-1.485	-0.00064984	437.6107537225423	18.028	0.47017	18.028	17.746	18.216	0					27	15	2	0	0	0	0.33347	1	1815	1815		0.45452	0.29519	1	38116			27137	7673	15535	15536	33731	33731					0.16967961321756775
LSPWALATAS	10	Unmodified	_LSPWALATAS_					0	0	0			REV__ENST00000522519.5_1_8:72964911-72964986:+|nuORF	REV__ENST00000522519.5_1_8:72964911-72964986:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7742919921875	2	508.7742	1015.53385	0.40534	0.00020623	-1.2794	-0.00065092	-0.87405	-0.00044469	508.77434988406026	45.501	0.65052	45.566	45.274	45.925	0.065048					67	23	5	0	0	0	0.34795	1	10162	10162		13.042	1.4022	1	921850	+		27138	21917	15536	15537	33732	33732					0.026700540689603258
LSQALPSSQV	10	Unmodified	_LSQALPSSQV_					0	0	0		nc|ENSG00000227059|E9PGG2|ANHX;ENSG00000227059|ENST00000545940|ANHX	nc|ENSG00000227059|E9PGG2|ANHX	nc|ENSG00000227059|E9PGG2|ANHX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2662963867188	2	515.282389	1028.55022	0.65622	0.00033814	-1.3982	-0.00072049	-0.74202	-0.00038235	515.2820711252872	60.568	0.26182	60.665	60.579	60.841	0.096985					11	8	2	0	0	0	0.3001	1	14860	14860		20.415	2.2682	1	85820			27139	8456	15537	15538	33733	33733					0.037091352350216766
LSQANLVQL	9	Unmodified	_LSQANLVQL_					0	0	0			REV__ENST00000321437.8_1_15:63558938-63559025:+|nuORF	REV__ENST00000321437.8_1_15:63558938-63559025:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.2874450683594	2	493.287474	984.560395	0.49793	0.00024562	-0.26137	-0.00012893	0.23656	0.00011669	493.287241999578	67.581	0.64591	67.659	67.354	68	0.078041					53	22	3	0	0	0	0.017549	1	16937	16937		67.838	5.2655	1	745710	+		27140	19967	15538	15539	33734	33734					0.06749742960278127
LSQENYHW	8	Unmodified	_LSQENYHW_					0	0	0			REV__nc|ENSG00000157343|Q5T9G4-3|ARMC12	REV__nc|ENSG00000157343|Q5T9G4-3|ARMC12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.294921875	2	538.743431	1075.47231	0.54679	0.00029458	1.335	0.00071923	1.8818	0.0010138	538.743616839883	62.406	0.38927	62.406	62.162	62.552	0					24	14	2	0	0	0	0.34131	1	15422	15422		12.532	1.7076	1	113040	+		27141	16778	15539	15540	33735	33735					-0.06240877630330033
LSQERIIQ	8	Unmodified	_LSQERIIQ_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;RBPJ|p.E392Rfs*41|1|0.05|ENSG00000168214|chr4:26430508-26430509|-/A|frameshift_variant;RBPJ|p.E392Afs*42|1|0.05|ENSG00000168214|chr4:26430509-26430510|-/CTAA|frameshift_variant;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;ENST00000411556.2_1_9:44472681-44473188:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7976989746094	2	493.785099	985.555644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.142	1	45.21	44.71	45.71	0.068569								0	0	0	0.3293	1	10062	10062		24.021	0	1				27142	6254	15540	15541	33736	33736					0.06228858817530636
LSQFHKLK	8	Unmodified	_LSQFHKLK_					0	0	0			REV__ENST00000302014.10_1_5:140012494-140012747:-|nuORF	REV__ENST00000302014.10_1_5:140012494-140012747:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8107604980469	2	500.800552	999.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.488	1	21.488	20.988	21.988	0								0	0	0	0.36486	1	2856	2856		7.9102	0	1		+		27143	19828	15541	15542	33737	33737					0.08674056922427553
LSQFYVTWYP	10	Unmodified	_LSQFYVTWYP_					0	0	0			REV__chr12:128809449-128809943|115|16.83|0.25|6.05|-|0|None,SLC15A4|1	REV__chr12:128809449-128809943|115|16.83|0.25|6.05|-|0|None,SLC15A4|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7801513671875	3	435.216768	1302.62847	-0.22873	-9.9547E-05	-1.2441	-0.00054145	-1.4728	-0.000641	435.2170717937172	31.446	0.30421	31.488	31.296	31.6	0.042366					17	10	2	0	0	0	0.32095	1	5909	5909		3.0723	1.8574	1	179430	+		27144	13176	15542	15543	33738	33738					-0.01073432179714473
LSQHHLENRWR	11	Unmodified	_LSQHHLENRWR_					0	0	0			REV__chr5:156954756-156981919|403|10.18|0.17|5.94|-|0|TIMD4,None|1	REV__chr5:156954756-156981919|403|10.18|0.17|5.94|-|0|TIMD4,None|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.29736328125	3	492.592002	1474.75418	-0.76079	-0.00037476	-0.28742	-0.00014158	-1.0482	-0.00051634	492.59161254034086	35.11	0.96585	35.11	34.5	35.466	0					75	34	3	0	0	0	0.3333	1	6964	6964		1.3296	0	1	320150	+		27145	13205	15543	15544	33739	33739					0.035790924490584075
LSQHHLENRWR	11	Unmodified	_LSQHHLENRWR_					0	0	0			REV__chr5:156954756-156981919|403|10.18|0.17|5.94|-|0|TIMD4,None|1	REV__chr5:156954756-156981919|403|10.18|0.17|5.94|-|0|TIMD4,None|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.29705810546875	3	492.592002	1474.75418	-0.61775	-0.0003043	-0.98393	-0.00048468	-1.6017	-0.00078898	492.5915443949697	34.951	0.85656	35.028	34.533	35.39	0.077377					65	30	3	0	0	0	0.3333	1	6857	6857		1.3296	1.3296	1	260530	+		27146	13205	15543	15544	33740	33740					0.035790924490584075
LSQIQSLD	8	Unmodified	_LSQIQSLD_					0	0	0			REV__nc|ENSG00000122145|Q9Y458-2|TBX22	REV__nc|ENSG00000122145|Q9Y458-2|TBX22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.22998046875	2	452.242732	902.470912	-0.065492	-2.9618E-05	-0.28804	-0.00013026	-0.35353	-0.00015988	452.2425805688669	18.93	0.25772	18.872	18.788	19.046	-0.058172					16	8	2	0	0	0	0.42758	1	2071	2071		13.508	0	1	30011	+		27147	15151	15544	15545	33741	33741					0.015774882808955226
LSQKRPYVD	9	Unmodified	_LSQKRPYVD_					0	0	0		ENSG00000171056|ENST00000304501|SOX7;nc|ENSG00000171056|Q9BT81-2|SOX7	ENSG00000171056|ENST00000304501|SOX7	ENSG00000171056|ENST00000304501|SOX7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3040771484375	2	553.303655	1104.59276	0.047229	2.6132E-05	0.65828	0.00036423	0.70551	0.00039036	553.3039976545037	14.906	0.53853	14.906	14.561	15.1	0					44	18	3	0	0	0	0.12642	1	850	850		34.402	0	1	149050			27148	6508	15545	15546	33742	33742					0.04464530363270569
LSQKRPYVD	9	Unmodified	_LSQKRPYVD_					0	0	0		ENSG00000171056|ENST00000304501|SOX7;nc|ENSG00000171056|Q9BT81-2|SOX7	ENSG00000171056|ENST00000304501|SOX7	ENSG00000171056|ENST00000304501|SOX7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.304443359375	2	553.303655	1104.59276	0.0098065	5.426E-06	0.49927	0.00027625	0.50907	0.00028167	553.3040161798668	15.053	0.48541	14.988	14.73	15.216	-0.064414					40	16	3	0	0	0	0.20626	1	884	884		22.736	2.2827	1	147250			27149	6508	15545	15546	33743	33743					0.04464530363270569
LSQKRPYVD	9	Unmodified	_LSQKRPYVD_					0	0	0		ENSG00000171056|ENST00000304501|SOX7;nc|ENSG00000171056|Q9BT81-2|SOX7	ENSG00000171056|ENST00000304501|SOX7	ENSG00000171056|ENST00000304501|SOX7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.303655	1104.59276	0.047229	2.6132E-05	0.65828	0.00036423	0.70551	0.00039036	553.3039976545037	14.906	0.53853	14.906	14.561	15.1	0	-0.028605	5.1881E-05	NaN	34.402	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149050			27150	6508	15545	15546							0.04464530363270569
LSQLTHSIT	9	Unmodified	_LSQLTHSIT_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8107604980469	2	500.277106	998.53966	0.41691	0.00020857	-2.6761	-0.0013388	-2.2592	-0.0011302	500.2765060074299	21.428	0.54184	21.428	21.138	21.68	0					28	18	2	0	0	0	0.25706	1	2856	2856		6.7232	0.51738	1	47822			27151	7225	15546	15547	33744	33744					0.04033152580609567
LSQLYMFNVL	10	Unmodified	_LSQLYMFNVL_					0	0	0			REV__ENSG00000198952|ENST00000361813|SMG5	REV__ENSG00000198952|ENST00000361813|SMG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.20843505859375	3	409.886253	1226.63693	0.072142	2.957E-05	4.0849	0.0016744	4.1571	0.0017039	410.221738539933	29.957	0.082111	29.957	29.888	29.97	0					4	2	2	0	0	0	0.31696	1	5414	5414		10.151	3.1135	1	16671	+		27152	18900	15547	15548	33745	33745					0.03267798465253691
LSQLYMFNVL	10	Unmodified	_LSQLYMFNVL_					0	0	0			REV__ENSG00000198952|ENST00000361813|SMG5	REV__ENSG00000198952|ENST00000361813|SMG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.88641357421875	3	409.886253	1226.63693	0.04145	1.699E-05	-0.059417	-2.4354E-05	-0.017967	-7.3643E-06	409.8862995777147	26.851	1.168	26.83	26.419	27.587	-0.021412					102	40	4	0	0	0	0.33104	1	4475	4475		10.315	0.55098	1	969620	+		27153	18900	15547	15548	33746	33746					0.03267798465253691
LSQLYMFNVL	10	Unmodified	_LSQLYMFNVL_					0	0	0			REV__ENSG00000198952|ENST00000361813|SMG5	REV__ENSG00000198952|ENST00000361813|SMG5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	409.886253	1226.63693	0.16629	6.8161E-05	-2.3192	-0.00095059	-2.1529	-0.00088243	409.88520601982987	30.189	0.14253	30.217	30.131	30.274	0.027946	0.13005	-0.0038384	NaN	10.151	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45535	+		27154	18900	15547	15548							0.03267798465253691
LSQMQKKYYKF	11	Unmodified	_LSQMQKKYYKF_					0	0	0		ENSG00000116254|ENST00000262450|CHD5	ENSG00000116254|ENST00000262450|CHD5	ENSG00000116254|ENST00000262450|CHD5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.81298828125	3	488.595362	1462.76426	0.14063	6.8711E-05	2.6561	0.0012978	2.7967	0.0013665	488.93072867945017	49.012	0.31171	49.044	48.929	49.24	0.032043					13	10	2	0	0	0	0.33189	1	11235	11235		3.5927	0.52041	1	106390			27155	2718	15548	15549	33747	33747					0.05138519339425329
LSQMRKVV	8	Unmodified	_LSQMRKVV_					0	0	0			REV__nc|ENSG00000137275|Q13546-2|RIPK1	REV__nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.30340576171875	2	480.786587	959.558621	-0.097055	-4.6663E-05	0.82411	0.00039622	0.72705	0.00034956	480.78690931059157	13.192	0.35153	13.093	13.011	13.362	-0.099291					21	11	3	0	0	0	0.34408	1	400	400		2.3027	0	1	63544	+		27156	15853	15549	15550	33748	33748					0.07722410670680802
LSQNYMGRFNY	11	Unmodified	_LSQNYMGRFNY_					0	0	0			REV__ENST00000524191.5_1_8:74584658-74585454:-|nuORF	REV__ENST00000524191.5_1_8:74584658-74585454:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7457580566406	3	464.883683	1391.62922	0.046341	2.1543E-05	-0.87384	-0.00040623	-0.8275	-0.00038469	464.8833869536466	29.531	0.49841	29.543	29.331	29.83	0.012266					36	16	4	0	0	0	0.3325	1	5275	5275		4.1166	1.8639	1	158490	+		27157	21937	15550	15551	33749	33749					-0.05092960802289781
LSQPLPGPVG	10	Unmodified	_LSQPLPGPVG_					0	0	0		nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL	nc|ENSG00000059145|Q9H9P5|UNKL	nc|ENSG00000059145|Q9H9P5|UNKL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.766357421875	2	482.776742	963.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.897	1	40.897	40.397	41.397	0								0	0	0	0.34454	1	8764	8764		17.113	0.96379	1				27158	740	15551	15552	33750	33750					0.05570357931571834
LSQPLRRLI	9	Unmodified	_LSQPLRRLI_					0	0	0			REV__ENST00000575475.2_1_17:5235261-5235390:+|nuORF	REV__ENST00000575475.2_1_17:5235261-5235390:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3536987304688	2	548.353483	1094.69241	0.44825	0.0002458	0.080793	4.4303E-05	0.52904	0.0002901	548.3535115392673	51.681	0.94009	51.681	51.327	52.267	0					102	34	4	0	0	0	0.19747	1	12169	12169		24.021	5.8742	1	4667800	+		27159	22443	15552	15553	33751	33751					0.14885392767905614
LSQQVQKQY	9	Unmodified	_LSQQVQKQY_					0	0	0		nc|ENSG00000131355|Q9BY15-2|ADGRE3;ENSG00000131355|ENST00000253673|ADGRE3	nc|ENSG00000131355|Q9BY15-2|ADGRE3	nc|ENSG00000131355|Q9BY15-2|ADGRE3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7421264648438	2	561.301113	1120.58767	0.33821	0.00018984	0.59511	0.00033404	0.93332	0.00052387	561.3016361650673	30.524	0.31513	30.524	30.359	30.674	0					13	10	2	0	0	0	0.26031	1	5618	5618		3.5965	0	1	47666			27160	3554	15553	15554	33752	33752					0.032202265006844755
LSQRNLLR	8	Unmodified	_LSQRNLLR_					0	0	0			REV__ENST00000402136.5_1_2:242523922-242524009:-|nuORF	REV__ENST00000402136.5_1_2:242523922-242524009:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2647399902344	2	500.306532	998.598512	0.42855	0.00021441	1.1968	0.00059875	1.6253	0.00081316	500.30709265523507	30.234	0.50467	30.262	30.048	30.552	0.027946					27	17	2	0	0	0	0.33993	1	5555	5555		16.942	0	1	149150	+		27161	20714	15554	15555	33753	33753					0.09915673665614122
LSQRQLAR	8	Unmodified	_LSQRQLAR_					0	0	0		ENSG00000183742|ENST00000400331|MACC1	ENSG00000183742|ENST00000400331|MACC1	ENSG00000183742|ENST00000400331|MACC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.29034423828125	2	486.290882	970.567212	0.51383	0.00024987	-0.48194	-0.00023436	0.031885	1.5506E-05	486.29045794353937	20.748	1.2706	20.695	20.387	21.658	-0.052912					106	44	3	0	0	0	0.37937	1	2734	2734		21.747	0	1	2839000			27162	7398	15555	15556	33754	33754					0.08075100631504029
LSQRSIYQNA	10	Unmodified	_LSQRSIYQNA_					0	0	0		ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.2772216796875	2	590.309469	1178.60439	0.29168	0.00017218	-1.0584	-0.0006248	-0.76676	-0.00045262	590.308333084837	69.304	0.53735	69.282	69.026	69.564	-0.022087					25	18	2	0	0	0	0.31926	1	17574	17574		5.7319	0	1	198950			27163	1456	15556	15557	33755	33755					0.022227273866064934
LSQSLPPGRIF	11	Unmodified	_LSQSLPPGRIF_					0	0	0		ENST00000609898.1_1_10:45454386-45454641:-|nuORF	ENST00000609898.1_1_10:45454386-45454641:-|nuORF	ENST00000609898.1_1_10:45454386-45454641:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.56793212890625	3	405.567912	1213.68191	-0.41271	-0.00016738	-0.19553	-7.9301E-05	-0.60824	-0.00024668	405.56799651247485	35.412	1.5815	35.412	34.618	36.2	0					168	57	5	0	0	0	0.41517	1	7157	7157		9.2438	0.79947	1	3189400			27164	12334	15557	15558	33756	33756					0.0836136532279852
LSQSLPPGRIF	11	Unmodified	_LSQSLPPGRIF_					0	0	0		ENST00000609898.1_1_10:45454386-45454641:-|nuORF	ENST00000609898.1_1_10:45454386-45454641:-|nuORF	ENST00000609898.1_1_10:45454386-45454641:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.56793212890625	3	405.567912	1213.68191	-0.67523	-0.00027385	0.098896	4.0109E-05	-0.57633	-0.00023374	405.5680953357944	35.322	1.246	35.4	34.78	36.026	0.077381					152	44	5	0	0	0	0.41517	1	7122	7122		9.2438	0.79947	1	3351400			27165	12334	15557	15558	33757	33757					0.0836136532279852
LSQSQFTLT	9	Unmodified	_LSQSQFTLT_					0	0	0			REV__ENSG00000132938|ENST00000612955|MTUS2	REV__ENSG00000132938|ENST00000612955|MTUS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.3258056640625	2	512.769114	1023.52368	0.59077	0.00030293	-1.3021	-0.00066767	-0.71132	-0.00036474	512.7682006433557	33.734	0.57623	33.734	33.393	33.969	0					24	14	2	0	0	0	0.2451	1	6532	6532		10.824	2.9138	1	109990	+		27166	15597	15558	15559	33758	33758					0.01285446343717922
LSQSTIITV	9	Unmodified	_LSQSTIITV_					0	0	0			REV__ENSG00000181903|ENST00000314259|OR4C6	REV__ENSG00000181903|ENST00000314259|OR4C6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.27264404296875	2	481.281857	960.549162	0.23372	0.00011249	-0.12895	-6.206E-05	0.10478	5.0427E-05	481.2815679087896	24.537	0.52959	24.464	24.234	24.763	-0.072559					25	17	2	0	0	0	0.25706	1	3754	3754		6.7232	0	1	63800	+		27167	18169	15559	15560	33759	33759					0.06730920866141332
LSQTPEIPID	10	Unmodified	_LSQTPEIPID_					0	0	0		nc|ENSG00000073803|O43283-5|MAP3K13;nc|ENSG00000073803|O43283-4|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13	nc|ENSG00000073803|O43283-5|MAP3K13	nc|ENSG00000073803|O43283-5|MAP3K13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7955322265625	2	556.795329	1111.5761	-0.13857	-7.7157E-05	0.49483	0.00027552	0.35626	0.00019836	556.7954558467958	35.423	0.82871	35.498	34.874	35.703	0.075306					61	29	3	0	0	0	0.34795	1	7031	7031		13.042	0	1	386930			27168	1006	15560	15561	33760	33760					0.024779846866522348
LSQVKYIFMDI	11	Unmodified	_LSQVKYIFMDI_					0	0	0		ENST00000564350.1_1_15:89826403-89833569:+|nuORF	ENST00000564350.1_1_15:89826403-89833569:+|nuORF	ENST00000564350.1_1_15:89826403-89833569:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.9126892089844	3	452.91258	1355.71591	0.11841	5.3631E-05	-0.27522	-0.00012465	-0.1568	-7.1018E-05	452.91267820172806	24.899	1.0412	24.899	24.673	25.714	0					132	35	5	0	0	0	0.2912	2	3962	3962;4006		23.016	7.4772	1	2420500			27169	11947	15561	15562	33761;33762	33761					0.05228025699534555
LSQVKYIFMDI	11	Unmodified	_LSQVKYIFMDI_					0	0	0		ENST00000564350.1_1_15:89826403-89833569:+|nuORF	ENST00000564350.1_1_15:89826403-89833569:+|nuORF	ENST00000564350.1_1_15:89826403-89833569:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.9127197265625	3	452.91258	1355.71591	0.037658	1.7056E-05	-0.28154	-0.00012751	-0.24389	-0.00011046	452.9127074357104	24.97	1.7822	24.914	23.922	25.704	-0.055931					174	61	6	0	0	0	0.34327	3	3929	3929;3978;4021		18.34	2.8013	1	2654700			27170	11947	15561	15562	33763;33764;33765	33763					0.05228025699534555
LSQVKYIFMDI	11	Unmodified	_LSQVKYIFMDI_					0	0	0		ENST00000564350.1_1_15:89826403-89833569:+|nuORF	ENST00000564350.1_1_15:89826403-89833569:+|nuORF	ENST00000564350.1_1_15:89826403-89833569:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.9126281738281	3	452.91258	1355.71591	-0.16425	-7.4391E-05	0.30593	0.00013856	0.14168	6.4169E-05	452.9127888476116	24.914	1.7922	24.883	24.001	25.793	-0.03141					90	62	2	0	0	0	0.2912	4	3963	3920;3963;4004;4048		23.016	6.7411	1	2687200			27171	11947	15561	15562	33766;33767;33768;33769	33767					0.05228025699534555
LSQWTNPS	8	Unmodified	_LSQWTNPS_					0	0	0		ENSG00000206075|ENST00000382771|SERPINB5	ENSG00000206075|ENST00000382771|SERPINB5	ENSG00000206075|ENST00000382771|SERPINB5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2535705566406	2	466.727249	931.439946	-0.1671	-7.7991E-05	0.37399	0.00017455	0.20689	9.656E-05	466.7273879607831	25.845	0.24004	25.845	25.769	26.009	0					13	8	2	0	0	0	0.34039	1	4215	4215		15.847	1.2655	1	135090			27172	8312	15562	15563	33770	33770					-0.02851665033347217
LSRAKRLVL	9	Unmodified	_LSRAKRLVL_					0	0	0			REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16	REV__nc|ENSG00000167291|Q8TBP0-4|TBC1D16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3200073242188	2	528.356025	1054.6975	0.4252	0.00022466	0.14876	7.8597E-05	0.57396	0.00030325	528.3561023446359	26.763	0.47746	26.763	26.558	27.035	0					29	16	2	0	0	0	0.2451	1	4476	4476		15.847	5.7733	1	123270	+		27173	17374	15563	15564	33771	33771					0.17233696630501072
LSRAPDGAAL	10	Unmodified	_LSRAPDGAAL_					0	0	0		nc|ENSG00000120256|Q86VZ4-2|LRP11;ENSG00000120256|ENST00000239367|LRP11	nc|ENSG00000120256|Q86VZ4-2|LRP11	nc|ENSG00000120256|Q86VZ4-2|LRP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7696228027344	2	485.769448	969.524344	0.38675	0.00018787	-0.21954	-0.00010665	0.16721	8.1224E-05	485.7692455969551	29.831	0.53238	29.831	29.58	30.113	0					30	18	2	0	0	0	0.29092	1	5388	5388		21.537	1.1224	1	140710			27174	2933	15564	15565	33772	33772					0.03836285783404492
LSRAPDGAAL	10	Unmodified	_LSRAPDGAAL_					0	0	0		nc|ENSG00000120256|Q86VZ4-2|LRP11;ENSG00000120256|ENST00000239367|LRP11	nc|ENSG00000120256|Q86VZ4-2|LRP11	nc|ENSG00000120256|Q86VZ4-2|LRP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7691955566406	2	485.769448	969.524344	0.29521	0.0001434	-0.7368	-0.00035792	-0.4416	-0.00021451	485.76913886586175	29.722	0.64129	29.734	29.532	30.173	0.012266					32	21	2	0	0	0	0.33104	1	5393	5393		16.149	1.3108	1	123930			27175	2933	15564	15565	33773	33773					0.03836285783404492
LSRCDILL	8	Unmodified	_LSRCDILL_					0	0	0			REV__GALK1|p.S254Afs*10|1|0.48|ENSG00000108479|chr17:75762737-75762737|T/-|frameshift_variant	REV__GALK1|p.S254Afs*10|1|0.48|ENSG00000108479|chr17:75762737-75762737|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7654724121094	2	466.76532	931.516088	0.0064351	3.0037E-06	0.40275	0.00018799	0.40918	0.00019099	466.7654282818869	52.161	0.56716	52.16	51.902	52.469	-0.00081253					48	20	3	0	0	0	0.20518	1	12236	12236		42.095	6.0504	1	517200	+		27176	14597	15565	15566	33774	33774					0.04759015542447287
LSRCDILL	8	Unmodified	_LSRCDILL_					0	0	0			REV__GALK1|p.S254Afs*10|1|0.48|ENSG00000108479|chr17:75762737-75762737|T/-|frameshift_variant	REV__GALK1|p.S254Afs*10|1|0.48|ENSG00000108479|chr17:75762737-75762737|T/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	466.76532	931.516088	-0.023931	-1.117E-05	0.39187	0.00018291	0.36794	0.00017174	466.7653593823058	52.149	0.49423	52.149	51.914	52.408	0	-0.0099191	-2.5444E-05	NaN	42.095	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455690	+		27177	14597	15565	15566							0.04759015542447287
LSRCDILL	8	Unmodified	_LSRCDILL_					0	0	0			REV__GALK1|p.S254Afs*10|1|0.48|ENSG00000108479|chr17:75762737-75762737|T/-|frameshift_variant	REV__GALK1|p.S254Afs*10|1|0.48|ENSG00000108479|chr17:75762737-75762737|T/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	466.76532	931.516088	0.072322	3.3757E-05	0.45331	0.00021159	0.52563	0.00024535	466.76548865135453	52.118	0.67706	52.168	51.817	52.494	0.050571	0.0087978	3.191E-05	NaN	42.095	36	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	507640	+		27178	14597	15565	15566							0.04759015542447287
LSRCDILL	8	Unmodified	_LSRCDILL_					0	0	0			REV__GALK1|p.S254Afs*10|1|0.48|ENSG00000108479|chr17:75762737-75762737|T/-|frameshift_variant	REV__GALK1|p.S254Afs*10|1|0.48|ENSG00000108479|chr17:75762737-75762737|T/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	466.76532	931.516088	0.0064351	3.0037E-06	0.40275	0.00018799	0.40918	0.00019099	466.7654282818869	52.161	0.56716	52.16	51.902	52.469	-0.00081253	0.0011214	-1.5291E-05	NaN	42.095	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517200	+		27179	14597	15565	15566							0.04759015542447287
LSREDSTMI	9	Unmodified	_LSREDSTMI_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.74462890625	2	526.258056	1050.50156	0.2913	0.0001533	-1.4147	-0.0007445	-1.1234	-0.0005912	526.2572670132253	59.675	0.62638	59.675	59.38	60.006	0					49	21	3	0	0	0	0.15943	1	14513	14513		39.95	5.548	1	1007000			27180	964	15566	15567	33775	33775					-0.021671013963668884
LSRELHILTMN	11	Unmodified	_LSRELHILTMN_					0	0	0		LTR64_dup121|chr6:30372934-30373453:-|1.2445045347204733|0.0001499607713119|13.02|391.0|28|1|anti-sense	LTR64_dup121|chr6:30372934-30373453:-|1.2445045347204733|0.0001499607713119|13.02|391.0|28|1|anti-sense	LTR64_dup121|chr6:30372934-30373453:-|1.2445045347204733|0.0001499607713119|13.02|391.0|28|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.51812744140625	3	442.911462	1325.71256	0.027445	1.2156E-05	0.46254	0.00020487	0.48999	0.00021702	442.91164120059244	46.446	0.38268	46.501	46.355	46.738	0.054371					27	13	3	0	0	0	0.32912	1	10449	10449		8.2864	1.2493	1	551040			27181	12519	15567	15568	33776	33776					0.06272775645538786
LSRELQWS	8	Unmodified	_LSRELQWS_					0	0	0			REV__nc|ENSG00000242515|Q9HAW8-2|UGT1A10	REV__nc|ENSG00000242515|Q9HAW8-2|UGT1A10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2289123535156	2	509.769448	1017.52434	0.38512	0.00019632	-3.3074	-0.001686	-2.9223	-0.0014897	509.7679427209931	35.829	0.47126	35.915	35.698	36.17	0.08625					26	16	2	0	0	0	0.34092	1	7162	7162		13.508	1.8676	1	186550	+		27182	19185	15568	15569	33777	33777					0.01628285783431238
LSRELRLQMLI	11	Unmodified	_LSRELRLQMLI_					0	0	0		ENSG00000131437|ENST00000403231|KIF3A;nc|ENSG00000131437|Q9Y496|KIF3A;ENST00000487055.1_1_5:132036305-132039285:-|nuORF	ENSG00000131437|ENST00000403231|KIF3A	ENSG00000131437|ENST00000403231|KIF3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.27703857421875	3	457.942873	1370.80679	0.1629	7.46E-05	-2.9416	-0.0013471	-2.7787	-0.0012725	458.27564368488254	58.447	0.69764	58.447	57.927	58.624	0					32	23	2	0	0	0	0.32951	1	14175	14175		7.0371	4.1938	1	425310			27183	3565	15569	15570	33778	33778					0.1362191446767156
LSREPVEK	8	Unmodified	_LSREPVEK_					0	0	0			REV__nc|ENSG00000008083|Q92833-2|JARID2	REV__nc|ENSG00000008083|Q92833-2|JARID2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.9747619628906	2	479.271824	956.529095	0.30572	0.00014652	-0.38647	-0.00018522	-0.080751	-3.8701E-05	479.2716508613048	38.274	0.66013	38.365	38.042	38.702	0.090881					36	23	2	0	0	0	0.3408	1	7972	7972		14.838	0	1	293710	+		27184	13395	15570	15571	33779	33779					0.049091699261907706
LSRERNHKPS	10	Unmodified	_LSRERNHKPS_					0	0	0		ENSG00000112081|ENST00000373715|SRSF3	ENSG00000112081|ENST00000373715|SRSF3	ENSG00000112081|ENST00000373715|SRSF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.54522705078125	3	408.558299	1222.65307	-0.15037	-6.1434E-05	0.20172	8.2415E-05	0.051353	2.0981E-05	408.55848038990894	17.606	0.4029	17.489	17.323	17.726	-0.11739					40	13	4	0	0	0	0.39145	1	1649	1649		5.0475	1.1712	1	105540			27185	2411	15571	15572	33780	33780					0.050646407463545984
LSRERRRDR	9	Unmodified	_LSRERRRDR_					0	0	0			REV__ENSG00000112081|ENST00000373715|SRSF3	REV__ENSG00000112081|ENST00000373715|SRSF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5196228027344	3	415.241193	1242.70175	0.24487	0.00010168	1.0478	0.00043511	1.2927	0.00053679	415.5749684262847	28.9	0.30816	28.896	28.785	29.093	-0.0042572					19	10	3	0	0	0	0.25346	1	5149	5149		7.1017	0	1	105470	+		27186	14753	15572	15573	33781	33781					0.09010554106134805
LSRFCHIKPK	10	Unmodified	_LSRFCHIKPK_					0	0	0			REV__nc|ENSG00000187239|Q96RU3-3|FNBP1	REV__nc|ENSG00000187239|Q96RU3-3|FNBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.20843505859375	3	410.237621	1227.69103	0.092628	3.7999E-05	1.5455	0.00063402	1.6381	0.00067202	410.5728280364296	29.757	0.37479	29.757	29.659	30.034	0					16	12	2	0	0	0	0.32015	1	5414	5414		5.0475	0.3316	1	56342	+		27187	18497	15573	15574	33782	33782					0.08629435407442543
LSRFFLFFPPF	11	Unmodified	_LSRFFLFFPPF_					0	0	0		ENST00000237654.8_1_4:77996857-77997100:-|nuORF	ENST00000237654.8_1_4:77996857-77997100:-|nuORF	ENST00000237654.8_1_4:77996857-77997100:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7821044921875	3	473.26042	1416.75943	0.13758	6.5112E-05	2.6916	0.0012738	2.8292	0.001339	473.2614803130222	28.796	0.20889	28.791	28.658	28.867	-0.0042572					9	6	2	0	0	0	0.33169	1	5084	5084		3.8459	1.4111	1	44582			27188	8878	15574	15575	33783	33783					0.06772003258970472
LSRFKKPP	8	Unmodified	_LSRFKKPP_					0	0	0			REV__ENST00000535644.1_1_11:67163166-67165027:+|nuORF	REV__ENST00000535644.1_1_11:67163166-67165027:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7899169921875	2	486.803094	971.591636	0.27725	0.00013497	-0.23036	-0.00011214	0.046896	2.2829E-05	486.8023430443046	57.149	0.28076	57.227	57.149	57.43	0.078674					11	9	2	0	0	0	0.34092	1	13751	13751		13.508	0.97634	1	107290	+		27189	17725	15575	15576	33784	33784					0.10470360785029698
LSRFKKPP	8	Unmodified	_LSRFKKPP_					0	0	0			REV__ENST00000535644.1_1_11:67163166-67165027:+|nuORF	REV__ENST00000535644.1_1_11:67163166-67165027:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	486.803094	971.591636	0.39486	0.00019222	0.45323	0.00022063	0.84808	0.00041285	486.8027232225204	57.379	0.24978	57.379	57.216	57.466	0	0.075813	0.00028499	NaN	13.508	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100720	+		27190	17725	15575	15576							0.10470360785029698
LSRFLHRPQL	10	Unmodified	_LSRFLHRPQL_					0	0	0			REV__ENST00000439158.5_1_6:28303857-28303902:-|nuORF	REV__ENST00000439158.5_1_6:28303857-28303902:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.9189453125	3	422.919168	1265.73567	-0.018633	-7.88E-06	-0.10142	-4.2891E-05	-0.12005	-5.0771E-05	422.91918733040234	37.786	1.4625	37.884	37.552	39.015	0.097527					146	52	4	0	0	0	0.19885	1	7969	7969		28.234	6.4342	1	9787500	+		27191	21000	15576	15577	33785	33785					0.11343582545168829
LSRGLHRAL	9	Unmodified	_LSRGLHRAL_					0	0	0		PURG|p.E114Gfs*65|1|0.27|ENSG00000172733|chr8:31032435-31032442|CTTCAGCT/-|frameshift_variant	PURG|p.E114Gfs*65|1|0.27|ENSG00000172733|chr8:31032435-31032442|CTTCAGCT/-|frameshift_variant	PURG|p.E114Gfs*65|1|0.27|ENSG00000172733|chr8:31032435-31032442|CTTCAGCT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.8146057128906	2	511.814525	1021.6145	0.44914	0.00022988	-0.98807	-0.00050571	-0.53893	-0.00027583	511.81394173558886	21.022	0.62899	21.022	20.772	21.401	0					45	21	3	0	0	0	0.31417	1	2695	2695		6.7232	0	1	133360			27192	13056	15577	15578	33786	33786					0.10455379902498407
LSRGPVWLL	9	Unmodified	_LSRGPVWLL_					0	0	0		ENST00000301788.11_1_11:62534036-62534117:+|nuORF	ENST00000301788.11_1_11:62534036-62534117:+|nuORF	ENST00000301788.11_1_11:62534036-62534117:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2896728515625	2	520.816202	1039.61785	0.52001	0.00027083	-0.89212	-0.00046463	-0.37212	-0.0001938	520.8157504648788	53.145	0.509	53.145	52.932	53.441	0					45	18	3	0	0	0	0.24311	1	12600	12600		16.942	3.4344	1	1432400			27193	9228	15578	15579	33787	33787					0.09962629956521596
LSRGPVWLL	9	Unmodified	_LSRGPVWLL_					0	0	0		ENST00000301788.11_1_11:62534036-62534117:+|nuORF	ENST00000301788.11_1_11:62534036-62534117:+|nuORF	ENST00000301788.11_1_11:62534036-62534117:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2897338867188	2	520.816202	1039.61785	0.44508	0.00023181	-0.99249	-0.0005169	-0.54741	-0.0002851	520.8158148965136	53.206	0.66851	53.196	52.863	53.531	-0.0096054					55	24	3	0	0	0	0.18943	1	12636	12636		11.64	1.5664	1	2049500			27194	9228	15578	15579	33788	33788					0.09962629956521596
LSRHGLAIM	9	Unmodified	_LSRHGLAIM_					0	0	0			REV__ENST00000273968.4_1_4:89442642-89442780:-|nuORF	REV__ENST00000273968.4_1_4:89442642-89442780:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2728271484375	2	499.284211	996.55387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.251	1	42.337	41.837	42.837	0.085197								0	0	0	0.19804	1	9179	9179		23.148	0.41214	1		+		27195	19685	15579	15580	33789	33789					0.055455265279192645
LSRHIDKLH	9	Unmodified	_LSRHIDKLH_					0	0	0			REV__ENSG00000057704|ENST00000261226|TMCC3	REV__ENSG00000057704|ENST00000261226|TMCC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8250732421875	2	559.825089	1117.63563	0.16786	9.3975E-05	-0.44513	-0.00024919	-0.27726	-0.00015522	559.8247655858385	18.237	0.54363	18.237	17.991	18.535	0					44	18	3	0	0	0	0.25843	1	1860	1860		5.7319	0	1	171040	+		27196	13602	15580	15581	33790	33790					0.08151345211354055
LSRHIDKLH	9	Unmodified	_LSRHIDKLH_					0	0	0			REV__ENSG00000057704|ENST00000261226|TMCC3	REV__ENSG00000057704|ENST00000261226|TMCC3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	559.825089	1117.63563	-0.070299	-3.9355E-05	-0.45072	-0.00025232	-0.52102	-0.00029168	559.8250081993436	18.434	0.48339	18.376	18.171	18.654	-0.058172	0.06685	7.2294E-05	NaN	5.7319	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158910	+		27197	13602	15580	15581							0.08151345211354055
LSRIKRHF	8	Unmodified	_LSRIKRHF_					0	0	0		PRPF8|p.L885F|1|0.13|ENSG00000174231|chr17:1675954-1675954|G/A|missense_variant	PRPF8|p.L885F|1|0.13|ENSG00000174231|chr17:1675954-1675954|G/A|missense_variant	PRPF8|p.L885F|1|0.13|ENSG00000174231|chr17:1675954-1675954|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2810668945312	2	528.824892	1055.63523	0.20914	0.0001106	-3.7352	-0.0019753	-3.5261	-0.0018647	529.3241121636571	60.283	0.37791	60.283	60.035	60.413	0					16	13	2	0	0	0	0.3366	1	14704	14704		12.532	0	1	169480			27198	13053	15581	15582	33791	33791					0.10963970282159607
LSRKLHKI	8	Unmodified	_LSRKLHKI_					0	0	0		ENSG00000133103|ENST00000455146|COG6;nc|ENSG00000133103|Q9Y2V7-2|COG6;nc|ENSG00000133103|Q9Y2V7-4|COG6	ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.28302001953125	2	497.829643	993.644734	0.37851	0.00018843	-0.43909	-0.00021859	-0.060587	-3.0162E-05	497.82938956491967	39.612	0.38975	39.705	39.497	39.887	0.09267					26	13	3	0	0	0	0.33993	1	8405	8405		16.942	0	1	163960			27199	3693	15582	15583	33792	33792					0.14765738567689368
LSRKSHKNK	9	Unmodified	_LSRKSHKNK_					0	0	0			REV__ENSG00000237038|ENST00000527080|USP17L8	REV__ENSG00000237038|ENST00000527080|USP17L8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3308715820312	2	549.330539	1096.64652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.646	1	23.573	23.073	24.073	-0.072559								0	0	0	0.2489	1	3513	3513		6.7232	0.99131	1		+		27200	19148	15583	15584	33793	33793					0.10206747585630183
LSRKTHIL	8	Unmodified	_LSRKTHIL_					0	0	0		ENSG00000175264|ENST00000308064|CHST1	ENSG00000175264|ENST00000308064|CHST1	ENSG00000175264|ENST00000308064|CHST1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.77435302734375	2	484.306001	966.597449	0.41844	0.00020266	-0.19328	-9.3608E-05	0.22516	0.00010905	484.3058962397725	40.2	0.41714	40.299	40.062	40.479	0.099407					25	14	2	0	0	0	0.34167	1	8572	8572		7.2892	7.2892	1	186460			27201	6853	15584	15585	33794	33794					0.11281459296708363
LSRKYWNDCEP	11	Unmodified	_LSRKYWNDCEP_					0	0	0		ENSG00000113905|ENST00000232003|HRG	ENSG00000113905|ENST00000232003|HRG	ENSG00000113905|ENST00000232003|HRG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2902526855469	3	470.887205	1409.63978	0.40746	0.00019187	-1.2938	-0.00060923	-0.88632	-0.00041736	471.22050012596947	20.537	0.84795	20.426	20.215	21.063	-0.11003					44	30	2	0	0	0	0.33303	1	2649	2649		2.4348	1.9288	1	255930			27202	2538	15585	15586	33795	33795					-0.04864978147907095
LSRLHCISI	9	Unmodified	_LSRLHCISI_					0	0	0			REV__MLT1G3_dup1020|chr5:178236632-178237010:+|2.065310631292048|0.1828941330595661|3.5|518.0|4|1|sense	REV__MLT1G3_dup1020|chr5:178236632-178237010:+|2.065310631292048|0.1828941330595661|3.5|518.0|4|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.30615234375	2	521.297319	1040.58008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.227	1	36.309	35.809	36.809	0.082355								0	0	0	0.19534	1	7338	7338		24.021	0	1		+		27203	22864	15586	15587	33796	33796					0.06141795699386421
LSRLHCISI	9	Unmodified	_LSRLHCISI_					0	0	0			REV__MLT1G3_dup1020|chr5:178236632-178237010:+|2.065310631292048|0.1828941330595661|3.5|518.0|4|1|sense	REV__MLT1G3_dup1020|chr5:178236632-178237010:+|2.065310631292048|0.1828941330595661|3.5|518.0|4|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.3060913085938	2	521.297319	1040.58008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.208	1	36.294	35.794	36.794	0.08625								0	0	0	0.19534	1	7326	7326		24.021	2.2739	1		+		27204	22864	15586	15587	33797	33797					0.06141795699386421
LSRLIWVE	8	Unmodified	_LSRLIWVE_					0	0	0			REV__ENST00000535902.5_2_12:12483699-12483756:-|nuORF	REV__ENST00000535902.5_2_12:12483699-12483756:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3002014160156	2	508.300384	1014.58622	0.37749	0.00019188	-0.44792	-0.00022768	-0.070426	-3.5797E-05	508.300240868472	59.071	0.65705	59.057	58.712	59.37	-0.014267					47	22	3	0	0	0	0.31088	1	14383	14383		15.847	0	1	860180	+		27205	22073	15587	15588	33798	33798					0.07950637202554844
LSRLVHTLS	9	Unmodified	_LSRLVHTLS_					0	0	0			REV__ENSG00000115942|ENST00000234296|ORC2	REV__ENSG00000115942|ENST00000234296|ORC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2869262695312	2	513.308741	1024.60293	0.31326	0.0001608	1.9301	0.00099075	2.2434	0.0011515	513.8113312476206	48.929	0.080711	48.974	48.935	49.016	0.044891					4	2	2	0	0	0	0.25202	1	11246	11246		3.5965	1.7523	1	179030	+		27206	14903	15588	15589	33799	33799					0.09161138088529697
LSRMEDENNRL	11	Unmodified	_LSRMEDENNRL_					0	0	0		ENSG00000186834|ENST00000332499|HEXIM1	ENSG00000186834|ENST00000332499|HEXIM1	ENSG00000186834|ENST00000332499|HEXIM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.25628662109375	3	459.557747	1375.65141	0.14328	6.5846E-05	-0.87618	-0.00040266	-0.7329	-0.00033681	459.55734547903324	32.929	0.27711	32.983	32.765	33.042	0.054375					12	9	2	0	0	0	0.3322	1	6289	6289		2.6312	0	1	154210			27207	7648	15589	15590	33800	33800					-0.021387811245631383
LSRMKNFL	8	Unmodified	_LSRMKNFL_					0	0	0			REV__ENST00000289968.10_1_16:24930781-24931099:-|nuORF	REV__ENST00000289968.10_1_16:24930781-24931099:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2770690917969	2	504.786587	1007.55862	0.45908	0.00023174	1.876	0.00094695	2.335	0.0011787	504.7880207528987	53.931	0.62437	53.921	53.771	54.395	-0.0096092					27	22	2	0	0	0	0.3366	1	12874	12874		18.135	1.1927	1	200320	+		27208	19749	15590	15591	33801	33801					0.05514410670673442
LSRNINGAEKL	11	Unmodified	_LSRNINGAEKL_					0	0	0			REV__nc|ENSG00000163808|Q9NS87-2|KIF15	REV__nc|ENSG00000163808|Q9NS87-2|KIF15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.5526123046875	3	405.566571	1213.67788	-0.31017	-0.00012579	-0.35848	-0.00014539	-0.66865	-0.00027118	405.56626774687703	22.788	0.57143	22.788	22.505	23.077	0					36	19	3	0	0	0	0.33169	1	3210	3210		3.8459	1.3474	1	38649	+		27209	17089	15591	15592	33802	33802					0.0795927582908007
LSRNPLCI	8	Unmodified	_LSRNPLCI_					0	0	0		ENST00000240618.10_1_12:10541419-10542549:-|nuORF	ENST00000240618.10_1_12:10541419-10542549:-|nuORF	ENST00000240618.10_1_12:10541419-10542549:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.19451904296875	2	458.257662	914.500772	-0.1997	-9.1512E-05	2.7829	0.0012753	2.5832	0.0011838	458.26024820450135	28.143	0.47547	28.144	27.905	28.381	0.00046921					26	16	2	0	0	0	0.33993	1	4890	4890		7.2892	0	1	120050			27210	8885	15592	15593	33803	33803					0.040101487452375295
LSRPALLAL	9	Unmodified	_LSRPALLAL_					0	0	0			REV__ENST00000238497.9_1_18:61078801-61089566:-|nuORF	REV__ENST00000238497.9_1_18:61078801-61089566:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.3106689453125	2	477.310752	952.606951	0.21071	0.00010057	-0.23712	-0.00011318	-0.02641	-1.2606E-05	477.3104759077226	62.671	1.7525	62.671	62.162	63.915	0					106	64	3	0	0	0	0.12642	1	15461	15461		34.402	3.7652	1	831230	+		27211	19486	15593	15594	33804	33804					0.12875227582219395
LSRPDRSR	8	Unmodified	_LSRPDRSR_					0	0	0			REV__ENST00000254351.8_1_2:20405171-20424731:-|nuORF	REV__ENST00000254351.8_1_2:20405171-20424731:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7870178222656	2	493.778139	985.541725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.264	1	51.274	50.774	51.774	0.0095634								0	0	0	0.34492	1	11941	11941		16.942	0	1		+		27212	19543	15594	15595	33805	33805					0.04837626109087978
LSRPQLNRKK	10	Unmodified	_LSRPQLNRKK_					0	0	0			REV__ENST00000561208.5_1_15:37391669-37391768:-|nuORF	REV__ENST00000561208.5_1_15:37391669-37391768:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.5628967285156	3	413.926322	1238.75714	-0.0048913	-2.0246E-06	-0.061197	-2.5331E-05	-0.066088	-2.7356E-05	413.925979900766	15.596	0.27544	15.532	15.424	15.7	-0.064413					12	8	2	0	0	0	0.32068	1	1103	1103		1.7423	0	1	12623	+		27213	22303	15595	15596	33806	33806					0.14730967573859743
LSRPRVLMLA	10	Unmodified	_LSRPRVLMLA_					0	0	0			REV__ENST00000405737.2_2_13:41556342-41635296:-|nuORF	REV__ENST00000405737.2_2_13:41556342-41635296:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.7947387695312	2	578.355168	1154.69578	0.36856	0.00021316	0.0026032	1.5056E-06	0.37117	0.00021467	578.3551582308626	45.264	0.48235	45.329	45.062	45.544	0.065048					27	17	2	0	0	0	0.31629	1	10094	10094		6.2058	0	1	151730	+		27214	20734	15596	15597	33807	33807					0.12462319550240863
LSRPSVVI	8	Unmodified	_LSRPSVVI_					0	0	0			REV__ENST00000442955.2_1_9:6669517-6669934:-|nuORF	REV__ENST00000442955.2_1_9:6669517-6669934:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.7740783691406	2	435.774003	869.533452	0.031577	1.3761E-05	0.0094584	4.1217E-06	0.041036	1.7882E-05	435.7739524004852	56.778	0.55583	56.778	56.61	57.165	0					28	20	2	0	0	0	0.33441	1	13690	13690		26.884	3.7352	1	284390	+		27215	15122	15597	15598	33808	33808					0.09346679139753178
LSRPSVVI	8	Unmodified	_LSRPSVVI_					0	0	0			REV__ENST00000442955.2_1_9:6669517-6669934:-|nuORF	REV__ENST00000442955.2_1_9:6669517-6669934:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	435.774003	869.533452	0.031577	1.3761E-05	0.0094584	4.1217E-06	0.041036	1.7882E-05	435.7739524004852	56.778	0.55583	56.778	56.61	57.165	0	-0.00046288	0.00011056	NaN	26.884	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284390	+		27216	15122	15597	15598							0.09346679139753178
LSRPSVVI	8	Unmodified	_LSRPSVVI_					0	0	0			REV__ENST00000442955.2_1_9:6669517-6669934:-|nuORF	REV__ENST00000442955.2_1_9:6669517-6669934:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	435.774003	869.533452	0.14424	6.2858E-05	-0.19304	-8.4123E-05	-0.048799	-2.1265E-05	435.7739090009179	56.694	0.49341	56.773	56.575	57.068	0.078674	-0.0053684	-6.5925E-05	NaN	26.884	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283440	+		27217	15122	15597	15598							0.09346679139753178
LSRPSVVI	8	Unmodified	_LSRPSVVI_					0	0	0			REV__ENST00000442955.2_1_9:6669517-6669934:-|nuORF	REV__ENST00000442955.2_1_9:6669517-6669934:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	435.774003	869.533452	0.42151	0.00018368	-0.23077	-0.00010057	0.19074	8.3118E-05	435.7738741237492	56.803	0.47036	56.784	56.619	57.09	-0.019081	0.0058313	-9.881E-05	NaN	26.884	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302230	+		27218	15122	15597	15598							0.09346679139753178
LSRPVPTIL	9	Unmodified	_LSRPVPTIL_					0	0	0			REV__ENST00000602788.5_1_17:45668182-45668227:+|nuORF	REV__ENST00000602788.5_1_17:45668182-45668227:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3158264160156	2	498.316035	994.617516	0.43217	0.00021536	-0.6608	-0.00032929	-0.22863	-0.00011393	498.31565924280045	62.345	0.69617	62.345	62.022	62.718	0					55	25	3	0	0	0	0.14786	1	15442	15442		31.268	2.1868	1	489740	+		27219	22644	15598	15599	33809	33809					0.11999210236660929
LSRPVPVRLLS	11	Unmodified	_LSRPVPVRLLS_					0	0	0			REV__ENSG00000188816|ENST00000339992|HMX2	REV__ENSG00000188816|ENST00000339992|HMX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.3161010742188	2	618.892972	1235.77139	0.010632	6.5802E-06	-0.21753	-0.00013463	-0.20689	-0.00012805	618.8931133029363	52.174	0.40302	52.173	51.982	52.385	-0.00080872					24	14	2	0	0	0	0.33073	1	12249	12249		7.1017	1.3699	1	274600	+		27220	18573	15599	15600	33810	33810					0.16293620002193165
LSRQKQFWM	9	Unmodified	_LSRQKQFWM_					0	0	0			REV__ENSG00000282757|ENST00000633875|DUXB	REV__ENSG00000282757|ENST00000633875|DUXB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.2500305175781	3	408.549976	1222.6281	-0.26259	-0.00010728	2.8781	0.0011758	2.6155	0.0010686	408.55096764248054	30.191	0.57594	30.218	29.759	30.335	0.027157					29	19	2	0	0	0	0.25441	1	5518	5518		6.6304	2.1015	1	84625	+		27221	19363	15600	15601	33811	33811					0.025688696194265503
LSRRAGPRLRW	11	Unmodified	_LSRRAGPRLRW_					0	0	0			REV__ENST00000564746.1_1_16:19078986-19083491:+|nuORF	REV__ENST00000564746.1_1_16:19078986-19083491:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.79254150390625	3	456.609216	1366.80582	-1.5103	-0.00068961	-1.2872	-0.00058776	-2.7975	-0.0012774	456.6085396381577	34.731	0.49261	34.807	34.604	35.097	0.075306					29	17	2	0	0	0	0.33056	1	6918	6918		8.7518	1.7147	1	183110	+		27222	17369	15601	15602	33812	33812					0.13708880933631917
LSRREQLRQV	10	Unmodified	_LSRREQLRQV_					0	0	0			REV__ENSG00000130307|ENST00000252597|USHBP1	REV__ENSG00000130307|ENST00000252597|USHBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	643.3726196289062	2	642.878385	1283.74222	0.80659	0.00051854	2.8307	0.0018198	3.6373	0.0023383	642.8794448090754	50.536	0.54964	50.536	50.296	50.846	0					34	19	3	0	0	0	0.28569	1	11662	11662		26.268	1.2772	1	722530	+		27223	15450	15602	15603	33813	33813					0.11169475705855803
LSRRKKEE	8	Unmodified	_LSRRKKEE_					0	0	0			REV__nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	REV__nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7647705078125	2	523.309272	1044.60399	0.26197	0.00013709	-3.6217	-0.0018953	-3.3598	-0.0017582	523.3067967001972	28.423	0.57965	28.419	28.14	28.72	-0.0042572					38	20	3	0	0	0	0.3408	1	4906	4906		14.838	0	1	163180	+		27224	18557	15603	15604	33814	33814					0.08347352457417401
LSRRLFCFSF	10	Unmodified	_LSRRLFCFSF_					0	0	0			REV__ENST00000344995.9_1_7:73623788-73623944:+|nuORF	REV__ENST00000344995.9_1_7:73623788-73623944:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.2632751464844	3	425.893742	1274.6594	-0.014496	-6.1738E-06	-0.88062	-0.00037505	-0.89512	-0.00038122	425.893390808967	38.323	0.69142	38.421	38.176	38.867	0.097527					37	24	2	0	0	0	0.31942	1	8051	8051		1.7423	0	1	156970	+		27225	20143	15604	15605	33815	33815					0.033054426535272796
LSRRLLLSPR	10	Unmodified	_LSRRLLLSPR_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.49700927734375	3	404.262935	1209.76697	-0.034955	-1.4131E-05	0.17766	7.182E-05	0.1427	5.7689E-05	404.2630839556568	35.973	0.52046	36.055	35.739	36.259	0.082355					40	18	3	0	0	0	0.32034	1	7289	7289		4.7159	0	1	235600	+		27226	14510	15605	15606	33816	33816					0.1704815557927759
LSRRLLLSPR	10	Unmodified	_LSRRLLLSPR_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.49700927734375	3	404.262935	1209.76697	0.058199	2.3528E-05	0.23092	9.3353E-05	0.28912	0.00011688	404.26301578389695	35.936	0.45437	36.022	35.79	36.244	0.08625					38	16	4	0	0	0	0.32116	1	7269	7269		2.6312	0	1	285350	+		27227	14510	15605	15606	33817	33817					0.1704815557927759
LSRRLLLSPR	10	Unmodified	_LSRRLLLSPR_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	404.262935	1209.76697	0.01909	7.7175E-06	0.39521	0.00015977	0.4143	0.00016749	404.26314293885025	36.006	0.5097	36.006	35.773	36.282	0	-0.021832	0.00014832	NaN	4.7159	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261290	+		27228	14510	15605	15606							0.1704815557927759
LSRRMGYFTI	10	Unmodified	_LSRRMGYFTI_					0	0	0		ENSG00000163285|ENST00000295452|GABRG1;ENSG00000182256|ENST00000615808|GABRG3;nc|ENSG00000113327|P18507-1|GABRG2;ENSG00000113327|ENST00000639213|GABRG2;nc|ENSG00000113327|P18507-3|GABRG2	ENSG00000163285|ENST00000295452|GABRG1	ENSG00000163285|ENST00000295452|GABRG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.91778564453125	3	415.225381	1242.65431	-0.34398	-0.00014283	2.5185	0.0010458	2.1745	0.00090293	415.22486807174334	35.338	0.93362	35.413	34.933	35.867	0.075306					52	33	3	0	0	0	0.3156	1	7131	7131		1.7423	0	1	353850			27229	5660	15606	15607	33818	33818					0.042691387909144396
LSRRNPEV	8	Unmodified	_LSRRNPEV_					0	0	0			REV__ENST00000316626.5_2_3:119642230-119642272:-|nuORF	REV__ENST00000316626.5_2_3:119642230-119642272:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7877502441406	2	485.775065	969.535577	0.038742	1.882E-05	-0.44352	-0.00021545	-0.40477	-0.00019663	485.7748965088685	18.944	1.2153	18.886	18.57	19.786	-0.058174					103	42	4	0	0	0	0.44569	1	2330	2330		7.2892	0	1	2446800	+		27230	19937	15607	15608	33819	33819					0.04959107877562019
LSRRQQVAPR	10	Unmodified	_LSRRQQVAPR_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.24237060546875	3	404.242422	1209.70544	-0.33042	-0.00013357	1.169	0.00047256	0.83858	0.00033899	404.2425182783188	18.989	0.61959	18.871	18.556	19.175	-0.11739					76	21	6	0	0	0	0.4022	1	2099	2099		3.0723	0	1	151180			27231	1474	15608	15609	33820	33820					0.10897223879965168
LSRRSYQERR	10	Unmodified	_LSRRSYQERR_					0	0	0		ENST00000483778.5_1_2:242598716-242598917:+|nuORF	ENST00000483778.5_1_2:242598716-242598917:+|nuORF	ENST00000483778.5_1_2:242598716-242598917:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.91632080078125	3	450.916486	1349.72763	-0.018406	-8.2998E-06	-0.33061	-0.00014908	-0.34902	-0.00015738	450.91628022718703	17.793	1.358	17.675	17.289	18.647	-0.11739					114	46	5	0	0	0	0.38745	1	1770	1770		5.7834	0.38072	1	774170			27232	11067	15609	15610	33821	33821					0.06675403557733262
LSRRSYQERR	10	Unmodified	_LSRRSYQERR_					0	0	0		ENST00000483778.5_1_2:242598716-242598917:+|nuORF	ENST00000483778.5_1_2:242598716-242598917:+|nuORF	ENST00000483778.5_1_2:242598716-242598917:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.91607666015625	3	450.916486	1349.72763	0.097729	4.4067E-05	-0.49437	-0.00022292	-0.39664	-0.00017885	450.91615416891904	17.723	1.4565	17.663	16.999	18.456	-0.060429					131	51	5	0	0	0	0.4022	1	1809	1809		3.0723	0.63748	1	791950			27233	11067	15609	15610	33822	33822					0.06675403557733262
LSRRVEAKWL	10	Unmodified	_LSRRVEAKWL_					0	0	0			REV__ENST00000481736.5_1_1:24124993-24127224:-|nuORF	REV__ENST00000481736.5_1_1:24124993-24127224:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.23431396484375	3	419.919056	1256.73534	0.13752	5.7747E-05	1.0194	0.00042805	1.1569	0.0004858	419.9194992441161	23.955	1.1087	23.916	23.283	24.392	-0.038927					85	38	3	0	0	0	0.31942	1	3681	3681		6.1918	2.0023	1	241820	+		27234	21283	15610	15611	33823	33823					0.11724162825316853
LSRRVGRL	8	Unmodified	_LSRRVGRL_					0	0	0		ENSG00000179698|ENST00000323662|WDR97;nc|ENSG00000179698|A6NE52-2|WDR97	ENSG00000179698|ENST00000323662|WDR97	ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.805908203125	2	478.809242	955.603932	0.018312	8.7681E-06	-2.4342	-0.0011655	-2.4159	-0.0011567	478.8079994538664	34.247	0.30997	34.314	34.153	34.463	0.066704					19	10	2	0	0	0	0.35947	1	6757	6757		24.021	8.1734	1	142810			27235	7139	15611	15612	33824	33824					0.12435397248077606
LSRSIVKRWA	10	Unmodified	_LSRSIVKRWA_					0	0	0		ENSG00000114200|ENST00000264381|BCHE	ENSG00000114200|ENST00000264381|BCHE	ENSG00000114200|ENST00000264381|BCHE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.2178955078125	3	405.915535	1214.72478	-0.095244	-3.8661E-05	-0.86313	-0.00035036	-0.95837	-0.00038902	405.9151356454146	43.065	0.35133	43.065	42.93	43.281	0					19	12	2	0	0	0	0.32015	1	9486	9486		5.0475	2.9615	1	162680			27236	2550	15612	15613	33825	33825					0.1260018017087532
LSRSLMGTL	9	Unmodified	_LSRSLMGTL_					0	0	0		ENST00000494080.5_1_11:64109091-64110096:+|nuORF;nc|ENSG00000168071|A6NC98-2|CCDC88B;ENST00000463837.5_1_11:64107738-64120281:+|nuORF;nc|ENSG00000168071|A6NC98-4|CCDC88B;ENSG00000168071|ENST00000356786|CCDC88B	ENST00000494080.5_1_11:64109091-64110096:+|nuORF	ENST00000494080.5_1_11:64109091-64110096:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.278076171875	2	489.276052	976.537551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.149	1	52.149	51.649	52.649	0								0	0	0	0.19013	1	12222	12222		25.399	0.72543	1				27237	6244	15613	15614	33826	33826					0.04834400571155584
LSRSPQPLR	9	Unmodified	_LSRSPQPLR_					0	0	0		ENST00000526972.5_1_11:65601488-65617723:+|nuORF;ENST00000533298.5_1_11:65601362-65617723:+|nuORF	ENST00000526972.5_1_11:65601488-65617723:+|nuORF	ENST00000526972.5_1_11:65601488-65617723:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.311767578125	2	527.311815	1052.60908	0.15051	7.9365E-05	-0.27586	-0.00014546	-0.12535	-6.6097E-05	527.3116368864123	14.089	0.23491	14.023	13.889	14.124	-0.066068					15	7	3	0	0	0	0.33508	1	636	636		3.5965	0	1	101610			27238	11565	15614	15615	33827	33827					0.08487656320016868
LSRSWVLLLPP	11	Unmodified	_LSRSWVLLLPP_					0	0	0			REV__ENST00000517609.5_1_8:124429070-124447771:+|nuORF	REV__ENST00000517609.5_1_8:124429070-124447771:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.3916015625	2	640.889898	1279.76524	0.42081	0.0002697	-0.23574	-0.00015108	0.18508	0.00011861	640.889615570614	74.055	0.72828	74.107	73.825	74.554	0.052361					54	24	3	0	0	0	0.44828	1	19016	19016		4.897	0.36815	1	1976500	+		27239	21856	15615	15616	33828	33828					0.13655101770655165
LSRTFQPP	8	Unmodified	_LSRTFQPP_					0	0	0			REV__ENST00000587842.1_1_18:56212405-56246105:-|nuORF	REV__ENST00000587842.1_1_18:56212405-56246105:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.79248046875	2	473.261259	944.507966	0.11086	5.2467E-05	0.58239	0.00027562	0.69325	0.00032809	473.26156723708897	34.008	0.46897	34.074	33.799	34.268	0.066704					26	16	2	0	0	0	0.31617	1	6671	6671		26.884	0	1	137650	+		27240	22539	15616	15617	33829	33829					0.033492046173250856
LSRTLEPYI	9	Unmodified	_LSRTLEPYI_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF;nc|ENSG00000101596|A6NHR9-3|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.787353515625	2	546.308406	1090.60226	0.34975	0.00019107	-0.33139	-0.00018104	0.018352	1.0026E-05	546.3083846042654	24.63	0.48912	24.599	24.373	24.862	-0.031408					31	16	3	0	0	0	0.25202	1	3864	3864		10.824	4.1008	1	82837			27241	1710	15617	15618	33830	33830					0.060582986487816015
LSRTTFLNK	9	Unmodified	_LSRTTFLNK_					0	0	0		ENSG00000197779|ENST00000338637|ZNF81	ENSG00000197779|ENST00000338637|ZNF81	ENSG00000197779|ENST00000338637|ZNF81	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7421875	2	540.314023	1078.61349	0.67803	0.00036635	-0.079815	-4.3125E-05	0.59822	0.00032323	540.3139843342154	59.264	0.53521	59.25	59.005	59.54	-0.014267					30	18	2	0	0	0	0.2451	1	14482	14482		10.824	0.75	1	215260			27242	7999	15618	15619	33831	33831					0.07733120742932442
LSRVELRDMV	10	Unmodified	_LSRVELRDMV_					0	0	0		ENSG00000170832|ENST00000300896|USP32;nc|ENSG00000170832|Q8NFA0-2|USP32	ENSG00000170832|ENST00000300896|USP32	ENSG00000170832|ENST00000300896|USP32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.2178955078125	3	406.56054	1216.65979	-0.091093	-3.7035E-05	-1.4913	-0.00060629	-1.5824	-0.00064333	406.5597333304272	43.224	0.35133	43.224	42.93	43.281	0					27	12	3	0	0	0	0.31969	1	9486	9486		5.7834	0	1	132660			27243	6482	15619	15620	33832	33832					0.06012817582700336
LSRWRREF	8	Unmodified	_LSRWRREF_					0	0	0			REV__nc|ENSG00000181409|Q6ZMQ8-3|AATK	REV__nc|ENSG00000181409|Q6ZMQ8-3|AATK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.750244140625	2	575.317432	1148.62031	0.46564	0.00026789	-1.2651	-0.00072781	-0.79942	-0.00045992	575.3168252310131	64.092	0.57133	64.092	63.771	64.342	0					33	20	2	0	0	0	0.34092	1	15830	15830		13.508	0	1	223200	+		27244	18146	15620	15621	33833	33833					0.051944784141596756
LSSAFVGLSF	10	Unmodified	_LSSAFVGLSF_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2584228515625	2	514.276575	1026.5386	0.22628	0.00011637	0.61865	0.00031816	0.84493	0.00043453	514.2766570448008	68.717	1.0888	68.698	68.429	69.518	-0.01915					87	38	3	0	0	0	0.21644	1	17462	17462		30.637	2.1497	1	720480			27245	5220	15621	15622	33834	33834					0.026389382117031346
LSSAVLSGRS	10	Unmodified	_LSSAVLSGRS_					0	0	0			REV__ENSG00000113645|ENST00000265293|WWC1	REV__ENSG00000113645|ENST00000265293|WWC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7769470214844	2	488.774731	975.534909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.461	1	36.543	36.043	37.043	0.082355								0	0	0	0.31311	1	7410	7410		26.268	0.86883	1		+		27246	14816	15622	15623	33835	33835					0.0461626843787144
LSSAYLLHVGN	11	Unmodified	_LSSAYLLHVGN_					0	0	0		nc|ENSG00000130167|Q9UKR8-4|TSPAN16;nc|ENSG00000130167|Q9UKR8-3|TSPAN16;ENSG00000130167|ENST00000590327|TSPAN16;nc|ENSG00000130167|Q9UKR8|TSPAN16	nc|ENSG00000130167|Q9UKR8-4|TSPAN16	nc|ENSG00000130167|Q9UKR8-4|TSPAN16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.2953491210938	2	587.316763	1172.61897	0.1569	9.2152E-05	1.573	0.00092385	1.7299	0.001016	587.3177663223456	67.065	0.10628	67.048	67.009	67.115	-0.016296					5	3	2	0	0	0	0.32477	1	16801	16801		16.149	1.3108	1	164280			27247	3454	15623	15624	33836	33836					0.039567995347624674
LSSEWLAEGFI	11	Unmodified	_LSSEWLAEGFI_					0	0	0			REV__ENST00000534096.5_1_19:50838046-50848012:-|nuORF	REV__ENST00000534096.5_1_19:50838046-50848012:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.2294006347656	3	417.880044	1250.6183	-0.34356	-0.00014357	0.18639	7.7888E-05	-0.15717	-6.5679E-05	417.87997410521433	14.502	0.48494	14.502	14.191	14.676	0					25	16	2	0	0	0	0.45202	1	675	675		4.4062	0	1	64691	+		27248	22049	15624	15625	33837	33837					0.0030196009504379617
LSSFDGWHETL	11	Unmodified	_LSSFDGWHETL_					0	0	0			REV__ENST00000566498.1_1_16:58284087-58284207:+|nuORF	REV__ENST00000566498.1_1_16:58284087-58284207:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8880920410156	3	431.203299	1290.58807	-0.45668	-0.00019692	0.68853	0.00029689	0.23184	9.9972E-05	431.2035893574527	39.14	0.55812	39.14	38.844	39.402	0					28	19	2	0	0	0	0.3322	1	8167	8167		4.7159	2.0847	1	208430	+		27249	22370	15625	15626	33838	33838					-0.045603985701291094
LSSFDGWHETL	11	Unmodified	_LSSFDGWHETL_					0	0	0			REV__ENST00000566498.1_1_16:58284087-58284207:+|nuORF	REV__ENST00000566498.1_1_16:58284087-58284207:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8878479003906	3	431.203299	1290.58807	0.10293	4.4384E-05	0.32321	0.00013937	0.42614	0.00018375	431.20334511473095	38.93	0.45189	39.03	38.84	39.292	0.099407					25	15	2	0	0	0	0.33122	1	8146	8146		7.0371	2.3212	1	212230	+		27250	22370	15625	15626	33839	33839					-0.045603985701291094
LSSFDGWHETL	11	Unmodified	_LSSFDGWHETL_					0	0	0			REV__ENST00000566498.1_1_16:58284087-58284207:+|nuORF	REV__ENST00000566498.1_1_16:58284087-58284207:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	431.203299	1290.58807	-0.14381	-6.201E-05	0.0092242	3.9775E-06	-0.13458	-5.8032E-05	431.2033503440819	38.919	0.60059	39.012	38.732	39.332	0.092674	-0.048564	-0.00048287	NaN	7.0371	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198160	+		27251	22370	15625	15626							-0.045603985701291094
LSSFDVGL	8	Unmodified	_LSSFDVGL_					0	0	0			REV__ENSG00000165661|ENST00000358701|QSOX2	REV__ENSG00000165661|ENST00000358701|QSOX2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.23431396484375	2	419.221268	836.427984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.217	1	24.178	23.678	24.678	-0.038927								0	0	0	0.36169	1	3681	3681		9.3474	0	1		+		27252	17251	15626	15627	33840	33840					0.003227182234695647
LSSFIWLFCP	10	Unmodified	_LSSFIWLFCP_					0	0	0			REV__ENST00000368608.3_1_6:116599413-116599590:-|nuORF	REV__ENST00000368608.3_1_6:116599413-116599590:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.5834655761719	3	404.875577	1211.6049	-0.18157	-7.3513E-05	-2.1487	-0.00086997	-2.3303	-0.00094348	405.209131833891	19.828	0.13579	19.828	19.713	19.849	0					6	4	2	0	0	0	0.32068	1	2325	2325		3.5871	2.3937	1	16399	+		27253	20344	15627	15628	33841	33841					0.00756430782098505
LSSFLSFDLM	10	Unmodified	_LSSFLSFDLM_					0	0	0		ENST00000374092.8_1_20:34256969-34257164:-|nuORF	ENST00000374092.8_1_20:34256969-34257164:-|nuORF	ENST00000374092.8_1_20:34256969-34257164:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.82958984375	2	580.288825	1158.5631	0.31994	0.00018566	0.3	0.00017409	0.61994	0.00035975	580.7917734388242	40.951	0.18418	41.041	40.978	41.162	0.090405					8	6	2	0	0	0	0.31847	1	8794	8794		6.7232	0.99131	1	79389			27254	9886	15628	15629	33842	33842					-0.009841696970852354
LSSFRRTLVF	10	Unmodified	_LSSFRRTLVF_					0	0	0			REV__nc|ENSG00000100242|Q9UH99-3|SUN2	REV__nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2500915527344	3	409.239907	1224.69789	0.026083	1.0674E-05	-3.889	-0.0015915	-3.8629	-0.0015808	409.2379671865161	30.238	0.14182	30.238	30.167	30.309	0					6	4	2	0	0	0	0.37568	1	5524	5524		7.9454	0.84368	1	37153	+		27255	14171	15629	15630	33843	33843					0.09453071559687487
LSSGRLNPPR	10	Unmodified	_LSSGRLNPPR_					0	0	0			REV__ENSG00000163683|ENST00000295958|SMIM14	REV__ENSG00000163683|ENST00000295958|SMIM14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8142700195312	2	548.814722	1095.61489	0.35682	0.00019583	-0.61083	-0.00033523	-0.25401	-0.00013941	548.8144848948158	25.818	1.0057	25.795	25.524	26.53	-0.022238					48	35	2	0	0	0	0.34795	2	4262	4197;4262		13.042	5.7532	1	238490	+		27256	17080	15630	15631	33844;33845	33845					0.07090754831688173
LSSGWELSP	9	Unmodified	_LSSGWELSP_					0	0	0			REV__ENSG00000162460|ENST00000375782|TMEM82	REV__ENSG00000162460|ENST00000375782|TMEM82	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.78173828125	2	488.242732	974.470912	0.34822	0.00017002	-0.57705	-0.00028174	-0.22883	-0.00011173	488.24248356806504	32.796	0.53849	32.796	32.606	33.145	0					28	18	2	0	0	0	0.2451	1	6323	6323		10.824	0	1	210900	+		27257	16985	15631	15632	33846	33846					-0.017345117191098325
LSSHKKQGPGL	11	Unmodified	_LSSHKKQGPGL_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.330078125	2	576.330205	1150.64586	-0.056649	-3.2649E-05	0.32533	0.0001875	0.26868	0.00015485	576.3304388392415	25.555	0.36259	25.523	25.319	25.682	-0.031408					21	12	2	0	0	0	0.40332	1	4102	4102		10.8	4.0763	1	62398			27258	5589	15632	15633	33847	33847					0.0765590814596635
LSSHLLNLT	9	Unmodified	_LSSHLLNLT_					0	0	0			REV__ENST00000430297.6_2_2:220048236-220048374:+|nuORF	REV__ENST00000430297.6_2_2:220048236-220048374:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2716369628906	2	499.287474	996.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.867	1	80.867	80.367	81.367	0								0	0	0	0.22065	1	21040	21040		15.847	4.2069	1		+		27259	20942	15633	15634	33848	33848					0.061977429602734446
LSSHSLLLL	9	Unmodified	_LSSHSLLLL_					0	0	0			REV__ENST00000357681.9_1_1:203712418-203712526:+|nuORF	REV__ENST00000357681.9_1_1:203712418-203712526:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.3162536621094	2	491.800217	981.585882	0.24359	0.0001198	0.28443	0.00013988	0.52802	0.00025968	491.80029700155694	57.694	1.2414	57.677	57.364	58.605	-0.0172					120	45	4	0	0	0	0.17787	1	14080	14080		26.884	1.4843	1	11210000	+		27260	20220	15634	15635	33849	33849					0.09435217482723601
LSSIESSYSES	11	Unmodified	_LSSIESSYSES_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.767578125	2	594.766965	1187.51938	0.39835	0.00023693	1.071	0.00063698	1.4693	0.0008739	594.7677140723031	31.544	0.5304	31.585	31.334	31.864	0.040989					31	18	2	0	0	0	0.41896	1	5973	5973		8.7454	0.58988	1	556170			27261	4073	15635	15636	33850	33850					-0.06688107660511378
LSSIRSKYKV	10	Unmodified	_LSSIRSKYKV_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.F753Sfs*5|1|0.07|ENSG00000173193|chr3:122700811-122700812|-/C|frameshift_variant	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.7197265625	2	590.856055	1179.69756	0.4483	0.00026488	0.64515	0.00038119	1.0935	0.00064608	590.8563216986722	49.742	0.64993	49.742	49.351	50.001	0					37	23	2	0	0	0	0.30079	1	11548	11548		14.838	0	1	232360			27262	6700	15636	15637	33851	33851					0.11489651839815451
LSSITHDWQD	10	Unmodified	_LSSITHDWQD_					0	0	0			REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.3612670898438	2	601.277835	1200.54112	0.53991	0.00032463	2.8282	0.0017006	3.3681	0.0020252	601.2800686685358	58.139	0.58379	58.224	57.97	58.554	0.085617					45	20	3	0	0	0	0.30079	1	14050	14050		20.454	4.6064	1	313870	+		27263	14058	15637	15638	33852	33852					-0.0511325812128689
LSSKEGFAK	9	Unmodified	_LSSKEGFAK_					0	0	0			REV__ZNF84|p.P570Tfs*3|1|0.13|ENSG00000198040|chr12:133058417-133058418|-/A|frameshift_variant	REV__ZNF84|p.P570Tfs*3|1|0.13|ENSG00000198040|chr12:133058417-133058418|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.6689147949219	2	483.766374	965.518196	0.80833	0.00039104	0.43987	0.00021279	1.2482	0.00060384	483.7663803765067	33.739	0.63882	33.805	33.596	34.235	0.06636					39	22	3	0	0	0	0.25323	1	6685	6685		10.074	0	1	164450	+		27264	18791	15638	15639	33853	33853					0.03405767551907957
LSSKEGFAK	9	Unmodified	_LSSKEGFAK_					0	0	0			REV__ZNF84|p.P570Tfs*3|1|0.13|ENSG00000198040|chr12:133058417-133058418|-/A|frameshift_variant	REV__ZNF84|p.P570Tfs*3|1|0.13|ENSG00000198040|chr12:133058417-133058418|-/A|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	483.766374	965.518196	0.57155	0.0002765	0.76798	0.00037152	1.3395	0.00064802	483.766667412169	33.982	0.74559	33.982	33.617	34.362	0	0.10405	3.9052E-05	NaN	10.074	33	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122120	+		27265	18791	15638	15639							0.03405767551907957
LSSKEGFAK	9	Unmodified	_LSSKEGFAK_					0	0	0			REV__ZNF84|p.P570Tfs*3|1|0.13|ENSG00000198040|chr12:133058417-133058418|-/A|frameshift_variant	REV__ZNF84|p.P570Tfs*3|1|0.13|ENSG00000198040|chr12:133058417-133058418|-/A|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	483.766374	965.518196	0.13652	6.6043E-05	0.90797	0.00043924	1.0445	0.00050529	483.7668021799487	33.78	0.49251	33.847	33.607	34.099	0.0667	-0.031223	0.00017449	NaN	10.074	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213310	+		27266	18791	15638	15639							0.03405767551907957
LSSKRKLPHF	10	Unmodified	_LSSKRKLPHF_					0	0	0			REV__nc|ENSG00000154889|Q53F39-5|MPPE1	REV__nc|ENSG00000154889|Q53F39-5|MPPE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.8817138671875	3	404.911902	1211.71388	-0.20858	-8.4455E-05	-0.96595	-0.00039112	-1.1745	-0.00047558	405.24603569238496	22.895	0.63635	22.85	22.501	23.137	-0.044867					47	22	4	0	0	0	0.31969	1	3328	3328		5.7834	0	1	45483	+		27267	16682	15639	15640	33854	33854					0.11648777796585819
LSSLKKLVV	9	Unmodified	_LSSLKKLVV_					0	0	0			REV__ENSG00000204450|ENST00000533122|TRIM64	REV__ENSG00000204450|ENST00000533122|TRIM64	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7513427734375	2	493.83406	985.653567	0.67051	0.00033112	-0.59196	-0.00029233	0.078552	3.8792E-05	493.8337092485813	33.448	0.49093	33.514	33.323	33.814	0.06636					31	17	2	0	0	0	0.25526	1	6575	6575		7.9102	0	1	213710	+		27268	18945	15640	15641	33855	33855					0.16016667413498453
LSSLKKLVV	9	Unmodified	_LSSLKKLVV_					0	0	0			REV__ENSG00000204450|ENST00000533122|TRIM64	REV__ENSG00000204450|ENST00000533122|TRIM64	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.83406	985.653567	0.53093	0.00026219	-0.8271	-0.00040845	-0.29617	-0.00014626	493.8336963667322	33.543	0.55039	33.543	33.365	33.916	0	0.011646	-0.00030234	NaN	7.9102	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207840	+		27269	18945	15640	15641							0.16016667413498453
LSSLKKLVV	9	Unmodified	_LSSLKKLVV_					0	0	0			REV__ENSG00000204450|ENST00000533122|TRIM64	REV__ENSG00000204450|ENST00000533122|TRIM64	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.83406	985.653567	0.18227	9.0012E-05	-0.30425	-0.00015025	-0.12197	-6.0235E-05	493.83394801956433	33.47	0.41061	33.536	33.328	33.739	0.066704	0.0052852	0.00021406	NaN	7.9102	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212130	+		27270	18945	15640	15641							0.16016667413498453
LSSLLTEVARL	11	Unmodified	_LSSLLTEVARL_					0	0	0			REV__ENST00000375533.5_1_10:28966447-28966537:+|nuORF	REV__ENST00000375533.5_1_10:28966447-28966537:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.3614501953125	2	601.36117	1200.70779	0.54725	0.00032909	0.15561	9.3575E-05	0.70285	0.00042267	601.3610999511586	58.232	0.60898	58.232	57.986	58.595	0					52	20	3	0	0	0	0.055577	1	14132	14132		51.63	5.8899	1	1348100	+		27271	20477	15641	15642	33856	33856					0.1154621477442106
LSSLLTEVARL	11	Unmodified	_LSSLLTEVARL_					0	0	0			REV__ENST00000375533.5_1_10:28966447-28966537:+|nuORF	REV__ENST00000375533.5_1_10:28966447-28966537:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.2787475585938	2	601.36117	1200.70779	0.54725	0.00032909	0.15561	9.3575E-05	0.70285	0.00042267	601.3610999511586	58.232	0.60898	58.232	57.986	58.595	0					52	20	3	0	0	0	0.32367	1	14189	14189		18.373	0	1	1348100	+		27272	20477	15641	15642	33857	33857					0.1154621477442106
LSSLSRRTQ	9	Unmodified	_LSSLSRRTQ_					0	0	0			REV__ENST00000488293.4_1_X:153313975-153314194:-|nuORF	REV__ENST00000488293.4_1_X:153313975-153314194:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3133544921875	2	524.298904	1046.58326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.709	1	27.688	27.188	28.188	-0.021412								0	0	0	0.21673	1	4742	4742		17.113	1.2657	1		+		27273	21574	15642	15643	33858	33858					0.06182762077764892
LSSLTGDLLL	10	Unmodified	_LSSLTGDLLL_					0	0	0		ENSG00000113212|ENST00000231137|PCDHB7	ENSG00000113212|ENST00000231137|PCDHB7	ENSG00000113212|ENST00000231137|PCDHB7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7670288085938	2	516.30279	1030.59103	0.63731	0.00032904	0.87895	0.0004538	1.5163	0.00078285	516.3034950616665	37.543	0.72132	37.543	37.397	38.118	0					35	25	2	0	0	0	0.31358	1	7883	7883		13.906	0	1	128700			27274	2480	15643	15644	33859	33859					0.07695476554658853
LSSLTGDLLL	10	Unmodified	_LSSLTGDLLL_					0	0	0		ENSG00000113212|ENST00000231137|PCDHB7	ENSG00000113212|ENST00000231137|PCDHB7	ENSG00000113212|ENST00000231137|PCDHB7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	516.30279	1030.59103	0.33088	0.00017084	0.89503	0.00046211	1.2259	0.00063295	516.3035616309592	37.452	0.4085	37.54	37.384	37.793	0.08741	-0.0016592	1.0571E-05	NaN	9.3831	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184060			27275	2480	15643	15644							0.07695476554658853
LSSNFILVKD	10	Unmodified	_LSSNFILVKD_					0	0	0		nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.3347778320312	2	568.321514	1134.62847	0.35223	0.00020018	0.93475	0.00053124	1.287	0.00073142	568.3219862908215	48.83	0.33795	48.83	48.606	48.944	0					19	11	2	0	0	0	0.3001	1	11177	11177		20.415	3.3016	1	484160			27276	12946	15644	15645	33860	33860					0.06654567820282864
LSSNFILVKD	10	Unmodified	_LSSNFILVKD_					0	0	0		nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.3348388671875	2	568.321514	1134.62847	0.54118	0.00030756	0.92769	0.00052723	1.4689	0.00083479	568.3220358255584	48.727	0.38484	48.772	48.66	49.045	0.044891					19	13	2	0	0	0	0.19345	1	11159	11159		33.445	10.709	1	435860			27277	12946	15644	15645	33861	33861					0.06654567820282864
LSSNFILVKD	10	Unmodified	_LSSNFILVKD_					0	0	0		nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.3346557617188	2	568.321514	1134.62847	0.28585	0.00016245	1.5194	0.00086349	1.8052	0.0010259	568.3223772844756	48.682	0.37976	48.714	48.549	48.929	0.032043					25	13	3	0	0	0	0.22295	1	11137	11137		29.841	0.759	1	485450			27278	12946	15644	15645	33862	33862					0.06654567820282864
LSSNFILVKD	10	Unmodified	_LSSNFILVKD_					0	0	0		nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	568.321514	1134.62847	0.35223	0.00020018	0.93475	0.00053124	1.287	0.00073142	568.3219862908215	48.83	0.33795	48.83	48.606	48.944	0	0.057863	-0.00015039	NaN	33.445	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484160			27279	12946	15644	15645							0.06654567820282864
LSSNRFLPK	9	Unmodified	_LSSNRFLPK_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2871704101562	2	531.308741	1060.60293	0.32937	0.000175	0.61691	0.00032777	0.94628	0.00050277	531.309015891917	38.737	0.60411	38.829	38.621	39.225	0.091297					42	21	3	0	0	0	0.25066	1	8199	8199		3.9444	0.3479	1	267640	+		27280	18137	15645	15646	33863	33863					0.07505138088504282
LSSPFHQL	8	Unmodified	_LSSPFHQL_					0	0	0			REV__nc|ENSG00000136869|O00206-3|TLR4	REV__nc|ENSG00000136869|O00206-3|TLR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.23431396484375	2	464.747985	927.481417	-0.017019	-7.9095E-06	-0.7883	-0.00036636	-0.80531	-0.00037427	464.74776827058156	51.751	0.50858	51.751	51.565	52.074	0					26	18	2	0	0	0	0.17761	1	12099	12099		46.921	0	1	366470	+		27281	15833	15646	15647	33864	33864					0.01477515725991907
LSSPFHQL	8	Unmodified	_LSSPFHQL_					0	0	0			REV__nc|ENSG00000136869|O00206-3|TLR4	REV__nc|ENSG00000136869|O00206-3|TLR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.23431396484375	2	464.747985	927.481417	-0.017019	-7.9095E-06	-0.7883	-0.00036636	-0.80531	-0.00037427	464.74776827058156	51.751	0.50858	51.751	51.565	52.074	0					26	18	2	0	0	0	0.30503	1	12152	12152		23.148	0	1	366470	+		27282	15833	15646	15647	33865	33865					0.01477515725991907
LSSPFHQL	8	Unmodified	_LSSPFHQL_					0	0	0			REV__nc|ENSG00000136869|O00206-3|TLR4	REV__nc|ENSG00000136869|O00206-3|TLR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.23443603515625	2	464.747985	927.481417	0.027576	1.2816E-05	-0.52021	-0.00024176	-0.49263	-0.00022895	464.7475687178873	51.695	0.55416	51.742	51.528	52.082	0.046574					32	19	3	0	0	0	0.23581	1	12095	12095		38.151	0	1	418390	+		27283	15833	15646	15647	33866	33866					0.01477515725991907
LSSPFHQL	8	Unmodified	_LSSPFHQL_					0	0	0			REV__nc|ENSG00000136869|O00206-3|TLR4	REV__nc|ENSG00000136869|O00206-3|TLR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2342834472656	2	464.747985	927.481417	0.027576	1.2816E-05	-0.52021	-0.00024176	-0.49263	-0.00022895	464.7475687178873	51.695	0.55416	51.742	51.528	52.082	0.046574					32	19	3	0	0	0	0.29855	1	12043	12043		24.674	0	1	418390	+		27284	15833	15646	15647	33867	33867					0.01477515725991907
LSSPFHQL	8	Unmodified	_LSSPFHQL_					0	0	0			REV__nc|ENSG00000136869|O00206-3|TLR4	REV__nc|ENSG00000136869|O00206-3|TLR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.23431396484375	2	464.747985	927.481417	0.033291	1.5472E-05	-0.27837	-0.00012937	-0.24508	-0.0001139	464.7477716307783	51.808	0.51299	51.808	51.656	52.169	-0.00030136					30	18	2	0	0	0	0.23581	2	12104	12104;12156		38.151	0	1	317290	+		27285	15833	15646	15647	33868;33869	33868					0.01477515725991907
LSSPFHQL	8	Unmodified	_LSSPFHQL_					0	0	0			REV__nc|ENSG00000136869|O00206-3|TLR4	REV__nc|ENSG00000136869|O00206-3|TLR4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	464.747985	927.481417	0.033291	1.5472E-05	-0.27837	-0.00012937	-0.24508	-0.0001139	464.7477716307783	51.808	0.51299	51.808	51.656	52.169	-0.00030136	0.040859	0.00012713	NaN	46.921	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317290	+		27286	15833	15646	15647							0.01477515725991907
LSSPHWWLHL	10	Unmodified	_LSSPHWWLHL_					0	0	0		nc|ENSG00000253771|Q5T6R2|TPTE2P1	nc|ENSG00000253771|Q5T6R2|TPTE2P1	nc|ENSG00000253771|Q5T6R2|TPTE2P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.89166259765625	3	425.892619	1274.65603	0.13241	5.6392E-05	-0.88689	-0.00037772	-0.75448	-0.00032133	425.89211574174664	20.965	0.78556	20.912	20.584	21.37	-0.05291					64	27	3	0	0	0	0.39782	1	2765	2765		3.8763	2.5467	1	287410			27287	12979	15647	15648	33870	33870					0.029685158711799886
LSSPLVSGAI	10	Unmodified	_LSSPLVSGAI_					0	0	0		ENST00000495160.2_3_3:57234031-57260394:-|nuORF	ENST00000495160.2_3_3:57234031-57260394:-|nuORF	ENST00000495160.2_3_3:57234031-57260394:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.27630615234375	2	472.276575	942.538597	-0.0017768	-8.3913E-07	-0.53707	-0.00025365	-0.53885	-0.00025448	472.2764823435494	30.963	0.83517	30.99	30.665	31.501	0.027946					64	29	3	0	0	0	0.22916	1	5768	5768		29.082	2.8134	1	790080			27288	11214	15648	15649	33871	33871					0.06502938211713172
LSSQHRRL	8	Unmodified	_LSSQHRRL_					0	0	0			REV__chr1:1708242-1708794|124|13.49|0.0|20.36|-|0|None,CDK11A|1	REV__chr1:1708242-1708794|124|13.49|0.0|20.36|-|0|None,CDK11A|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.78875732421875	2	498.788507	995.562461	0.043262	2.1579E-05	0.36414	0.00018163	0.4074	0.00020321	498.788589965397	14.986	0.42751	14.922	14.73	15.158	-0.064413					24	14	2	0	0	0	0.45307	1	900	900		4.756	0	1	142970	+		27289	13157	15649	15650	33872	33872					0.06450216488758542
LSSQLHQV	8	Unmodified	_LSSQLHQV_					0	0	0			REV__ENSG00000111249|ENST00000261726|CUX2	REV__ENSG00000111249|ENST00000261726|CUX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.79254150390625	2	456.250892	910.48723	-1.3911	-0.0006347	0.57237	0.00026115	-0.81874	-0.00037355	456.2510619055324	34.836	0.52528	34.912	34.685	35.21	0.075306					35	18	3	0	0	0	0.31088	1	6918	6918		28.487	1.6032	1	385800	+		27290	14712	15650	15651	33873	33873					0.02840614237675254
LSSREARPV	9	Unmodified	_LSSREARPV_					0	0	0			REV__ENST00000507139.5_1_5:139028301-139059434:+|nuORF	REV__ENST00000507139.5_1_5:139028301-139059434:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7495422363281	2	507.788173	1013.56179	0.22869	0.00011613	-0.43676	-0.00022178	-0.20807	-0.00010566	507.7878690640023	27.137	0.51564	27.137	26.925	27.441	0					25	17	2	0	0	0	0.25202	1	4613	4613		10.824	0	1	118680	+		27291	19833	15651	15652	33874	33874					0.05555377049040544
LSSRKEALL	9	Unmodified	_LSSRKEALL_					0	0	0			REV__ENST00000476141.1_1_X:48399826-48417478:+|nuORF	REV__ENST00000476141.1_1_X:48399826-48417478:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8084716796875	2	508.808574	1015.60259	0.31013	0.0001578	-0.31257	-0.00015904	-0.0024344	-1.2386E-06	508.80838788261866	29.394	0.7478	29.406	29.11	29.858	0.012266					51	25	3	0	0	0	0.15763	1	5234	5234		29.841	1.3461	1	304300	+		27292	13699	15652	15653	33875	33875					0.09541718368666352
LSSRKEALL	9	Unmodified	_LSSRKEALL_					0	0	0			REV__ENST00000476141.1_1_X:48399826-48417478:+|nuORF	REV__ENST00000476141.1_1_X:48399826-48417478:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.80859375	2	508.808574	1015.60259	0.085377	4.3441E-05	-0.068988	-3.5102E-05	0.016389	8.3389E-06	508.80853902169576	29.467	0.52533	29.48	29.22	29.745	0.013474					44	17	3	0	0	0	0.12279	1	5247	5247		34.932	1.4872	1	310200	+		27293	13699	15652	15653	33876	33876					0.09541718368666352
LSSSPWHGF	9	Unmodified	_LSSSPWHGF_					0	0	0			REV__ENST00000442885.2_1_11:65654989-65655220:-|nuORF	REV__ENST00000442885.2_1_11:65654989-65655220:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8034973144531	2	509.243067	1016.47158	0.10413	5.3029E-05	-0.81669	-0.00041589	-0.71255	-0.00036286	509.24496031985933	38.461	0.13961	38.461	38.406	38.546	0					6	4	2	0	0	0	0.24913	1	8045	8045		7.9102	3.9658	1	50297	+		27294	21058	15653	15654	33877	33877					-0.035996722793811387
LSSSQPGVVK	10	Unmodified	_LSSSQPGVVK_					0	0	0			REV__nc|ENSG00000273777|Q6UY09-2|CEACAM20	REV__nc|ENSG00000273777|Q6UY09-2|CEACAM20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7773742675781	2	501.284931	1000.55531	0.20191	0.00010121	1.3495	0.00067649	1.5514	0.00077771	501.2855745964716	27.149	0.56717	27.127	26.897	27.464	-0.021412					32	19	2	0	0	0	0.18562	1	4535	4535		34.402	10.381	1	227020	+		27295	19322	15654	15655	33878	33878					0.05505439097669296
LSSSSSNF	8	Unmodified	_LSSSSSNF_					0	0	0			REV__ENSG00000120725|ENST00000394817|SIL1	REV__ENSG00000120725|ENST00000394817|SIL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.204345703125	2	414.690333	827.366112	0.1537	6.3739E-05	0.64823	0.00026881	0.80193	0.00033255	414.6906751750995	29.483	0.3006	29.483	29.385	29.686	0					12	10	2	0	0	0	0.34319	1	5321	5321		5.7604	1.0044	1	39178	+		27296	15094	15655	15656	33879	33879					-0.054476331956493595
LSSSTPRLS	9	Unmodified	_LSSSTPRLS_					0	0	0			REV__nc|ENSG00000169894|Q02505-2|MUC3A	REV__nc|ENSG00000169894|Q02505-2|MUC3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7720947265625	2	474.261456	946.50836	-0.12987	-6.159E-05	0.055208	2.6183E-05	-0.074658	-3.5407E-05	474.261659466898	15.49	0.3971	15.49	15.257	15.654	0					15	12	2	0	0	0	0.24688	1	1071	1071		6.2058	0	1	21277	+		27297	17549	15656	15657	33880	33880					0.03296579546508838
LSSTAWQRV	9	Unmodified	_LSSTAWQRV_					0	0	0			REV__nc|ENSG00000115947|O43929-2|ORC4	REV__nc|ENSG00000115947|O43929-2|ORC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7404174804688	2	524.282723	1046.55089	0.21904	0.00011484	0.4991	0.00026167	0.71814	0.00037651	524.283138094194	39.666	0.74599	39.666	39.48	40.226	0					43	26	2	0	0	0	0.1854	1	8413	8413		32.305	6.9062	1	342550	+	+	27298	13267	15657	15658	33881	33881					0.02947974674748366
LSSTGKSGL	9	Unmodified	_LSSTGKSGL_					0	0	0			REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant;REV__nc|ENSG00000055208|Q9NYJ8-2|TAB2	REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.74822998046875	2	425.23745	848.460347	-0.22473	-9.5562E-05	0.037034	1.5748E-05	-0.18769	-7.9814E-05	425.23742233692786	23.491	0.585	23.41	23.197	23.782	-0.081657					25	20	2	0	0	0	0.23007	1	3459	3459		19.257	0	1	67825	+		27299	23319;13591	15658	15659	33882	33882					0.030055056264700397
LSSTGKSGL	9	Unmodified	_LSSTGKSGL_					0	0	0			REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant;REV__nc|ENSG00000055208|Q9NYJ8-2|TAB2	REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	425.23745	848.460347	-0.24469	-0.00010405	0.20443	8.6932E-05	-0.040263	-1.7121E-05	425.23740452576055	23.404	0.68673	23.404	23.047	23.734	0	-0.019865	0.00013574	NaN	19.257	27	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68127	+		27300	23319;13591	15658	15659							0.030055056264700397
LSSTGKSGL	9	Unmodified	_LSSTGKSGL_					0	0	0			REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant;REV__nc|ENSG00000055208|Q9NYJ8-2|TAB2	REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	425.23745	848.460347	-0.22473	-9.5562E-05	0.037034	1.5748E-05	-0.18769	-7.9814E-05	425.23742233692786	23.491	0.585	23.41	23.197	23.782	-0.081657	-0.013989	-6.6272E-06	NaN	19.257	25	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67825	+		27301	23319;13591	15658	15659							0.030055056264700397
LSSTGKSGL	9	Unmodified	_LSSTGKSGL_					0	0	0			REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant;REV__nc|ENSG00000055208|Q9NYJ8-2|TAB2	REV__TAB2|p.N274Ifs*30|1|0.2|ENSG00000055208|chr6:149378735-149378736|-/T|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	425.23745	848.460347	-0.0054854	-2.3326E-06	-0.0011886	-5.0545E-07	-0.006674	-2.838E-06	425.23729780205014	23.496	0.6173	23.457	23.231	23.848	-0.038927	0.033854	-3.9134E-05	NaN	19.257	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63509	+		27302	23319;13591	15658	15659							0.030055056264700397
LSSTPKKEI	9	Unmodified	_LSSTPKKEI_					0	0	0		ENST00000513963.1_1_2:170371464-170374764:+|nuORF	ENST00000513963.1_1_2:170371464-170374764:+|nuORF	ENST00000513963.1_1_2:170371464-170374764:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2745666503906	2	501.795132	1001.57571	0.46216	0.00023191	-0.50816	-0.00025499	-0.046004	-2.3085E-05	501.79478075556034	40.417	0.41045	40.517	40.34	40.75	0.099407					21	14	2	0	0	0	0.2322	1	8663	8663		20.454	0	1	201060			27303	11406	15659	15660	33883	33883					0.07498609757453778
LSSTQGLLSLL	11	Unmodified	_LSSTQGLLSLL_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.3058471679688	2	566.334621	1130.65469	0.4587	0.00025978	-2.2638	-0.0012821	-1.8051	-0.0010223	566.8348460346913	58.718	0.56054	58.704	58.416	58.977	-0.014267					37	19	3	0	0	0	0.32557	1	14193	14193		15.248	0	1	185620	+		27304	16569	15660	15661	33884	33884					0.0945883699175738
LSSVIIFSRFI	11	Unmodified	_LSSVIIFSRFI_					0	0	0		ENST00000312838.8_1_16:88763418-88763670:-|nuORF	ENST00000312838.8_1_16:88763418-88763670:-|nuORF	ENST00000312838.8_1_16:88763418-88763670:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.3831787109375	2	641.381906	1280.74926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.475	1	98.475	97.975	98.975	0								0	0	0	0.38114	1	26349	26349		1.3295	0	1				27305	9324	15661	15662	33885	33885					0.12011395533750147
LSSVIIFSRFI	11	Unmodified	_LSSVIIFSRFI_					0	0	0		ENST00000312838.8_1_16:88763418-88763670:-|nuORF	ENST00000312838.8_1_16:88763418-88763670:-|nuORF	ENST00000312838.8_1_16:88763418-88763670:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.3833618164062	2	641.381906	1280.74926	0.47875	0.00030706	0.0022317	1.4314E-06	0.48099	0.0003085	641.8823360423124	97.889	0.66091	97.882	97.366	98.027	-0.0068283					155	72	3	0	0	0	0.47546	3	26173	26173;26201;26244		1.3295	0	1	297020			27306	9324	15661	15662	33886;33887;33888	33886					0.12011395533750147
LSSVLLCVS	9	Carbamidomethyl (C)	_LSSVLLC(Carbamidomethyl (C))VS_	LSSVLLC(1)VS		LSSVLLC(55)VS		0	1	0			REV__ENST00000491442.5_1_1:42313526-42313595:-|nuORF	REV__ENST00000491442.5_1_1:42313526-42313595:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2705078125	2	489.270435	976.526318	0.29788	0.00014574	-0.39892	-0.00019518	-0.10104	-4.9437E-05	489.27020106142965	38.138	0.50632	38.138	37.871	38.377	0					46	17	3	0	0	0	0.044952	1	7926	7926		54.774	10.915	1	917980	+		27307	21615	15662	15663	33889	33889	33				0.03711578477020794
LSSVLLCVS	9	Carbamidomethyl (C)	_LSSVLLC(Carbamidomethyl (C))VS_	LSSVLLC(1)VS		LSSVLLC(55)VS		0	1	0			REV__ENST00000491442.5_1_1:42313526-42313595:-|nuORF	REV__ENST00000491442.5_1_1:42313526-42313595:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2706298828125	2	489.270435	976.526318	0.3723	0.00018216	-0.26484	-0.00012958	0.10746	5.2577E-05	489.270152568734	38.069	0.57844	38.16	37.877	38.455	0.090881					49	20	3	0	0	0	0.044952	1	7900	7900		54.774	10.915	1	965190	+		27308	21615	15662	15663	33890	33890	33				0.03711578477020794
LSSVLLCVS	9	Carbamidomethyl (C)	_LSSVLLC(Carbamidomethyl (C))VS_					0	1	0			REV__ENST00000491442.5_1_1:42313526-42313595:-|nuORF	REV__ENST00000491442.5_1_1:42313526-42313595:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	489.270435	976.526318	0.27039	0.0001323	-0.52779	-0.00025823	-0.2574	-0.00012594	489.270150254091	38.048	0.63963	38.145	37.768	38.407	0.097527	-0.0023137	-0.00013325	NaN	54.774	60	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	886050	+		27309	21615	15662	15663			33				0.03711578477020794
LSSVYRPR	8	Unmodified	_LSSVYRPR_					0	0	0		ENST00000509538.5_1_4:185573199-185578558:+|nuORF;nc|ENSG00000164306|Q96LW4-2|PRIMPOL;ENSG00000164306|ENST00000314970|PRIMPOL	ENST00000509538.5_1_4:185573199-185578558:+|nuORF	ENST00000509538.5_1_4:185573199-185578558:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2701110839844	2	489.279983	976.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.28	1	38.371	37.871	38.871	0.090881								0	0	0	0.29147	1	7965	7965		30.225	3.3412	1				27310	5825	15663	15664	33891	33891					0.05620295882943083
LSTAIIQIR	9	Unmodified	_LSTAIIQIR_					0	0	0			REV__ADH4|p.F365Lfs*3|1|0.19|ENSG00000198099|chr4:99126620-99126620|T/-|frameshift_variant	REV__ADH4|p.F365Lfs*3|1|0.19|ENSG00000198099|chr4:99126620-99126620|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.30401611328125	2	507.818941	1013.62333	-0.045637	-2.3176E-05	-0.021397	-1.0866E-05	-0.067034	-3.4041E-05	507.81885266894227	13.099	0.29463	13	12.894	13.189	-0.099291					21	9	4	0	0	0	0.26168	1	301	301		1.8442	0	1	98613	+		27311	13086	15664	15665	33892	33892					0.11706308748318861
LSTAIKTFYE	10	Unmodified	_LSTAIKTFYE_					0	0	0			REV__ENSG00000030110|ENST00000374467|BAK1	REV__ENSG00000030110|ENST00000374467|BAK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.3638916015625	2	586.813522	1171.61249	0.4256	0.00024975	-0.44756	-0.00026263	-0.02196	-1.2886E-05	586.8131922598009	21.362	1.0296	21.362	20.65	21.68	0					69	35	3	0	0	0	0.32072	1	2631	2631		2.9952	2.9952	1	305360	+		27312	13492	15665	15666	33893	33893					0.03354861583375168
LSTARQAF	8	Unmodified	_LSTARQAF_					0	0	0		ENST00000239223.3_1_5:172196045-172196123:-|nuORF	ENST00000239223.3_1_5:172196045-172196123:-|nuORF	ENST00000239223.3_1_5:172196045-172196123:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.7618408203125	2	447.245609	892.476666	0.04253	1.9021E-05	-1.2924	-0.00057803	-1.2499	-0.000559	447.24487918690323	29.534	0.78702	29.548	29.359	30.146	0.013474					30	26	2	0	0	0	0.34337	1	5473	5473		0	0	1	97167			27313	8882	15666	15667	33894	33894					0.02612631583235725
LSTAWILIL	9	Unmodified	_LSTAWILIL_					0	0	0			REV__ENST00000333082.7_2_20:1147747-1147939:+|nuORF	REV__ENST00000333082.7_2_20:1147747-1147939:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7413940429688	2	515.320786	1028.62702	0.26091	0.00013445	-0.85778	-0.00044203	-0.59687	-0.00030758	515.3203660051096	67.377	0.50744	67.455	67.15	67.657	0.078041					26	17	2	0	0	0	0.2451	1	16892	16892		15.847	1.0089	1	176870	+		27314	20054	15667	15668	33895	33895					0.11384978522187339
LSTCHAMI	8	Unmodified	_LSTCHAMI_					0	0	0			REV__ENST00000581417.5_1_17:62083756-62084088:-|nuORF	REV__ENST00000581417.5_1_17:62083756-62084088:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.88409423828125	2	438.209324	874.404094	-0.030436	-1.3337E-05	0.10589	4.6401E-05	0.075453	3.3064E-05	438.2093833714585	30.968	0.86545	30.968	30.418	31.284	0					45	30	2	0	0	0	0.34297	1	5572	5572		6.3541	0	1	189440	+		27315	22487	15668	15669	33896	33896					-0.03813161806192511
LSTCLKWPS	9	Unmodified	_LSTCLKWPS_					0	0	0			REV__MLT1J_dup7827|chr8:133363438-133363613:-|1.3733437300323597|0.0170131053912305|6.33|528.0|10|2|anti-sense	REV__MLT1J_dup7827|chr8:133363438-133363613:-|1.3733437300323597|0.0170131053912305|6.33|528.0|10|2|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7850341796875	2	517.770603	1033.52665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.439	1	51.486	50.986	51.986	0.046574								0	0	0	0.22377	1	12003	12003		14.838	0.93222	1		+		27316	22865	15669	15670	33897	33897					0.011229981968654101
LSTFFRKHIAM	11	Unmodified	_LSTFFRKHIAM_					0	0	0			REV__ENSG00000051341|ENST00000264233|POLQ	REV__ENSG00000051341|ENST00000264233|POLQ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.9162292480469	3	450.916547	1349.72781	0.14512	6.5439E-05	-0.62283	-0.00028085	-0.47771	-0.00021541	450.91613905589077	17.562	0.90249	17.562	17.122	18.024	0					95	30	4	0	0	0	0.45202	1	1728	1728		4.4062	1.0865	1	673120	+		27317	13568	15670	15671	33898	33898					0.06693687233382661
LSTFGLTL	8	Unmodified	_LSTFGLTL_					0	0	0			REV__nc|ENSG00000120907|P35348-9|ADRA1A	REV__nc|ENSG00000120907|P35348-9|ADRA1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.24755859375	2	426.247286	850.48002	-0.078976	-3.3663E-05	0.32554	0.00013876	0.24656	0.0001051	426.2473369401592	70.963	1.1113	71.024	70.351	71.463	0.060783					78	39	3	0	0	0	0.050494	1	18007	18007		77.984	7.2688	1	499770	+		27318	22970	15671	15672	33899	33899					0.04879881637236849
LSTFGLTL	8	Unmodified	_LSTFGLTL_					0	0	0			REV__nc|ENSG00000120907|P35348-9|ADRA1A	REV__nc|ENSG00000120907|P35348-9|ADRA1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.24737548828125	2	426.247286	850.48002	0.049049	2.0907E-05	0.010471	4.4633E-06	0.05952	2.537E-05	426.2472673494907	70.858	1.0721	70.833	70.407	71.479	-0.024872					65	38	3	0	0	0	0.19197	1	18111	18111		44.407	0	1	454410	+		27319	22970	15671	15672	33900	33900					0.04879881637236849
LSTFNLLFHF	10	Unmodified	_LSTFNLLFHF_					0	0	0			REV__ENST00000396821.7_1_22:38880236-38880329:-|nuORF	REV__ENST00000396821.7_1_22:38880236-38880329:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5264892578125	3	413.557125	1237.64954	-0.22176	-9.171E-05	-1.538	-0.00063604	-1.7597	-0.00072775	413.55704819692534	25.249	0.34138	25.218	24.953	25.294	-0.031408					14	11	2	0	0	0	0.32051	1	3926	3926		3.8763	0.55669	1	34872	+		27320	20658	15672	15673	33901	33901					0.04022577919795367
LSTIARKSL	9	Unmodified	_LSTIARKSL_					0	0	0		ENSG00000163285|ENST00000295452|GABRG1;ENSG00000182256|ENST00000615808|GABRG3;nc|ENSG00000113327|P18507-1|GABRG2;ENSG00000113327|ENST00000639213|GABRG2;nc|ENSG00000113327|P18507-3|GABRG2	ENSG00000163285|ENST00000295452|GABRG1	ENSG00000163285|ENST00000295452|GABRG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2554626464844	2	494.811116	987.60768	0.21781	0.00010778	-0.52484	-0.00025969	-0.30702	-0.00015192	494.81084502675594	33.284	0.36212	33.351	33.215	33.577	0.066704					17	12	2	0	0	0	0.24787	1	6427	6427		15.248	1.3424	1	123210			27321	5660	15673	15674	33902	33902					0.11338022231291234
LSTIIALHPP	10	Unmodified	_LSTIIALHPP_					0	0	0			REV__ENSG00000171435|ENST00000339824|KSR2	REV__ENSG00000171435|ENST00000339824|KSR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3054809570312	2	531.321317	1060.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.911	1	69.977	69.477	70.477	0.066048								0	0	0	0.34994	1	17686	17686		14.838	2.3067	1		+		27322	17636	15674	15675	33903	33903					0.1001919289108173
LSTKEPREV	9	Unmodified	_LSTKEPREV_					0	0	0			REV__ENST00000394155.6_1_X:135292840-135293086:+|nuORF	REV__ENST00000394155.6_1_X:135292840-135293086:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.7797241210938	2	529.795663	1057.57677	0.40758	0.00021593	0.12196	6.4616E-05	0.52954	0.00028055	529.7953560468895	51.63	0.44084	51.676	51.429	51.87	0.046577					29	15	2	0	0	0	0.16284	1	12120	12120		37.974	5.1883	1	1023600	+		27323	20616	15675	15676	33904	33904					0.05028824126384279
LSTKFNEK	8	Unmodified	_LSTKFNEK_					0	0	0			REV__nc|ENSG00000188994|O60281-2|ZNF292	REV__nc|ENSG00000188994|O60281-2|ZNF292	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2556457519531	2	483.766374	965.518196	0.40837	0.00019755	-0.84103	-0.00040686	-0.43266	-0.00020931	483.7660567563291	38.618	0.85293	38.715	38.437	39.29	0.097527					92	30	5	0	0	0	0.3671	1	8132	8132		23.148	5.0134	1	2191400	+		27324	18590	15676	15677	33905	33905					0.03405767551907957
LSTKGNWEVIK	11	Unmodified	_LSTKGNWEVIK_					0	0	0			REV__ENSG00000138760|ENST00000264896|SCARB2	REV__ENSG00000138760|ENST00000264896|SCARB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.8589477539062	2	637.858795	1273.70304	0.71626	0.00045687	-0.27917	-0.00017807	0.43709	0.0002788	637.8584899348381	43.219	0.57927	43.297	43.075	43.654	0.077515					51	20	3	0	0	0	0.33432	2	9482	9482;9529		27.223	3.4335	1	1127300	+		27325	15954	15677	15678	33906;33907	33906					0.07713330631668214
LSTKGNWEVIK	11	Unmodified	_LSTKGNWEVIK_					0	0	0			REV__ENSG00000138760|ENST00000264896|SCARB2	REV__ENSG00000138760|ENST00000264896|SCARB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.8585815429688	2	637.858795	1273.70304	0.56201	0.00035848	-0.19156	-0.00012219	0.37045	0.0002363	637.8585813227055	43.184	0.70355	43.268	43.061	43.765	0.083992					57	25	3	0	0	0	0.37255	2	9445	9445;9496		21.59	21.59	1	907930	+		27326	15954	15677	15678	33908;33909	33908					0.07713330631668214
LSTKTTVRY	9	Unmodified	_LSTKTTVRY_					0	0	0			REV__ENST00000505854.5_1_5:122110798-122139331:+|nuORF	REV__ENST00000505854.5_1_5:122110798-122139331:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7717895507812	2	534.806031	1067.59751	0.43646	0.00023342	-1.5268	-0.00081655	-1.0904	-0.00058313	535.3058447427971	43.205	0.74232	43.283	42.772	43.515	0.077515					38	26	2	0	0	0	0.25066	1	9514	9514		11.64	2.2929	1	145730	+		27327	18986	15678	15679	33910	33910					0.06641414506043475
LSTLHTEE	8	Unmodified	_LSTLHTEE_					0	0	0			REV__nc|ENSG00000108439|Q9NVS9-4|PNPO	REV__nc|ENSG00000108439|Q9NVS9-4|PNPO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2638244628906	2	465.232364	928.450176	0.25193	0.00011721	-0.20125	-9.3628E-05	0.05068	2.3578E-05	465.23242294672696	19.602	0.50836	19.546	19.395	19.904	-0.055693					20	17	2	0	0	0	0.34218	1	2308	2308		9.3474	0	1	23607	+		27328	14593	15679	15680	33911	33911					-0.016911020987663505
LSTLLSSKRA	10	Unmodified	_LSTLLSSKRA_					0	0	0			REV__ENSG00000120262|ENST00000239374|CCDC170	REV__ENSG00000120262|ENST00000239374|CCDC170	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.3272705078125	2	538.327131	1074.63971	0.64999	0.00034991	-0.016882	-9.0878E-06	0.63311	0.00034082	538.3269840381373	90.78	1.1945	90.78	90.287	91.481	0.0003891					240	84	4	0	0	0	0.38773	1	24064	24064		5.7319	5.7319	1	5046800	+		27329	15079	15680	15681	33912	33912					0.10537389914429696
LSTLRKSTL	9	Unmodified	_LSTLRKSTL_					0	0	0			REV__nc|ENSG00000182901|P49802-5|RGS7	REV__nc|ENSG00000182901|P49802-5|RGS7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.80401611328125	2	509.816399	1017.61824	0.63021	0.00032129	1.9137	0.00097565	2.5439	0.0012969	509.81749972404026	78.692	0.51699	78.692	78.389	78.906	0					35	19	3	0	0	0	0.31763	1	20308	20308		6.2058	6.2058	1	136800	+		27330	23126	15681	15682	33913	33913					0.11014004885703343
LSTLWRFS	8	Unmodified	_LSTLWRFS_					0	0	0		ENST00000449473.2_1_1:101552540-101552798:+|nuORF	ENST00000449473.2_1_1:101552540-101552798:+|nuORF	ENST00000449473.2_1_1:101552540-101552798:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2637939453125	2	505.276909	1008.53927	0.71377	0.00036065	-0.80053	-0.00040449	-0.086758	-4.3837E-05	505.2763987850106	77.348	2.1511	77.317	76.423	78.574	-0.031334					109	79	2	0	0	0	0.33245	1	19710	19710		13.508	13.508	1	201790			27331	10631	15682	15683	33914	33914					0.03533777651421133
LSTNQNLTHL	10	Unmodified	_LSTNQNLTHL_					0	0	0		nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3;ENST00000532083.1_1_1:247607259-247611803:+|nuORF	nc|ENSG00000162711|Q96P20-2|NLRP3	nc|ENSG00000162711|Q96P20-2|NLRP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8224487304688	2	570.80402	1139.59349	0.18868	0.0001077	-1.1524	-0.00065782	-0.96377	-0.00055012	570.8035237317192	44.147	0.32774	44.147	43.904	44.232	0					18	11	2	0	0	0	0.27248	1	9733	9733		23.79	4.5328	1	319750			27332	5605	15683	15684	33915	33915					0.029273250123196703
LSTPKLALT	9	Unmodified	_LSTPKLALT_					0	0	0			REV__nc|ENSG00000102890|Q96BJ8-3|ELMO3	REV__nc|ENSG00000102890|Q96BJ8-3|ELMO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.294189453125	2	472.294768	942.574983	0.089833	4.2428E-05	-0.35533	-0.00016782	-0.26549	-0.00012539	472.29445784870506	49.017	0.99932	49.049	48.549	49.548	0.032043					92	35	4	0	0	0	0.04299	1	11322	11322		55.503	5.9485	1	3580300	+		27333	14338	15684	15685	33916	33916					0.10139815108414041
LSTQFPHP	8	Unmodified	_LSTQFPHP_					0	0	0			REV__ENST00000588439.1_1_19:36398509-36399100:-|nuORF	REV__ENST00000588439.1_1_19:36398509-36399100:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.9415283203125	2	463.74016	925.465767	0.26829	0.00012442	-0.30739	-0.00014255	-0.039106	-1.8135E-05	463.7399391540069	53.318	0.7148	53.308	53.03	53.745	-0.0096054					37	26	3	0	0	0	0.27344	1	12549	12549		34.102	0	1	484850	+		27334	22545	15685	15686	33917	33917					5.229208954915521E-05
LSTQNLLI	8	Unmodified	_LSTQNLLI_					0	0	0			REV__ENSG00000276240|ENST00000641792|OR4E1	REV__ENSG00000276240|ENST00000641792|OR4E1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.60040283203125	2	451.271293	900.528032	0.18979	8.5645E-05	4.0888	0.0018452	4.2786	0.0019308	451.27203856941406	57.335	0.25294	57.421	57.184	57.437	0.085621					13	8	2	0	0	0	0.28769	1	13774	13774		37.974	0	1	77753	+		27335	19337	15686	15687	33918	33918					0.07378955557294375
LSTQPSVLTF	10	Unmodified	_LSTQPSVLTF_					0	0	0			REV__nc|ENSG00000112511|O43189-2|PHF1	REV__nc|ENSG00000112511|O43189-2|PHF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.27978515625	2	546.800414	1091.58628	0.86032	0.00047043	-1.907	-0.0010427	-1.0466	-0.0005723	546.7992075211465	52.984	0.36843	53.04	52.772	53.141	0.056255					22	12	2	0	0	0	0.27337	1	12448	12448		22.736	0	1	626600	+		27336	22949	15687	15688	33919	33919					0.04414592411899321
LSTRLLCFKI	10	Unmodified	_LSTRLLCFKI_					0	0	0			REV__ENST00000377773.9_1_9:37588731-37588791:-|nuORF	REV__ENST00000377773.9_1_9:37588731-37588791:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3590698242188	2	597.357376	1192.7002	0.51945	0.0003103	0.56717	0.0003388	1.0866	0.0006491	597.3586078268477	90.167	1.2978	90.167	89.63	90.927	0.0003891					299	105	4	0	0	0	0.3641	1	23794	23794		10.074	0.6908	1	970830	+		27337	20509	15688	15689	33920	33920					0.11155783973163125
LSTRSTYKD	9	Unmodified	_LSTRSTYKD_					0	0	0			REV__ENSG00000118985|ENST00000237853|ELL2	REV__ENSG00000118985|ENST00000237853|ELL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.2671508789062	2	535.77747	1069.54039	0.4028	0.00021581	2.8383	0.0015207	3.2411	0.0017365	535.7777796342787	38.307	0.49326	38.397	38.153	38.647	0.090881					45	17	3	0	0	0	0.22596	1	8034	8034		21.747	5.8995	1	373390	+		27338	15025	15689	15690	33921	33921					0.008399472296559907
LSTSSSSF	8	Unmodified	_LSTSSSSF_					0	0	0		ENST00000495568.7_1_16:88786791-88786842:-|nuORF	ENST00000495568.7_1_16:88786791-88786842:-|nuORF	ENST00000495568.7_1_16:88786791-88786842:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.5376281738281	2	408.192708	814.370863	0.042147	1.7204E-05	1.424	0.00058128	1.4662	0.00059848	408.1933669217219	38.608	0.62285	38.699	38.427	39.05	0.090881					26	22	2	0	0	0	0.32778	1	8083	8083		9.3474	0	1	85989			27339	11221	15690	15691	33922	33922					-0.04374749052885818
LSTTASWLKS	10	Unmodified	_LSTTASWLKS_					0	0	0		ENST00000448327.1_1_6:53493192-53495881:+|nuORF	ENST00000448327.1_1_6:53493192-53495881:+|nuORF	ENST00000448327.1_1_6:53493192-53495881:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.9437866210938	2	547.298039	1092.58152	0.51004	0.00027914	-3.9038	-0.0021366	-3.3938	-0.0018574	547.2975270030917	53.721	0.76018	53.777	53.56	54.32	0.056259					62	28	3	0	0	0	0.31119	1	12736	12736		13.615	0.10698	1	276410			27340	10614	15691	15692	33923	33923					0.038937082691290925
LSTWRPVAV	9	Unmodified	_LSTWRPVAV_					0	0	0		ENST00000469092.5_1_17:72701353-72708973:-|nuORF	ENST00000469092.5_1_17:72701353-72708973:-|nuORF	ENST00000469092.5_1_17:72701353-72708973:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.3186645507812	2	514.798009	1027.58147	0.38268	0.000197	-0.81733	-0.00042076	-0.43465	-0.00022376	514.7974765934136	63.758	0.30098	63.853	63.714	64.015	0.095722					14	10	2	0	0	0	0.2451	1	15821	15821		15.847	4.2069	1	81106			27341	10847	15692	15693	33924	33924					0.06877753059779934
LSVAHRGSL	9	Unmodified	_LSVAHRGSL_					0	0	0		ENSG00000103742|ENST00000352385|IGDCC4	ENSG00000103742|ENST00000352385|IGDCC4	ENSG00000103742|ENST00000352385|IGDCC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2720947265625	2	470.272158	938.529764	0.28184	0.00013254	0.030369	1.4282E-05	0.31221	0.00014682	470.2721015359529	82.116	1.5295	82.092	81.599	83.129	-0.02404					135	60	4	0	0	0	0.29176	1	21552	21552		10.074	2.7847	1	3977000			27342	1851	15693	15694	33925	33925					0.05804009365908769
LSVDIFFV	8	Unmodified	_LSVDIFFV_					0	0	0		ENST00000507209.5_1_4:187117965-187118319:+|nuORF	ENST00000507209.5_1_4:187117965-187118319:+|nuORF	ENST00000507209.5_1_4:187117965-187118319:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.26885986328125	2	470.262936	938.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.566	1	55.566	55.066	56.066	0								0	0	0	0.27914	1	13280	13280		32.117	0	1				27343	11334	15694	15695	33926	33926					0.03960454671323532
LSVFCDFMCS	10	Unmodified	_LSVFCDFMCS_					0	0	0		ENST00000543155.5_1_12:6840383-6840503:+|nuORF	ENST00000543155.5_1_12:6840383-6840503:+|nuORF	ENST00000543155.5_1_12:6840383-6840503:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3193359375	2	576.232138	1150.44972	0.41278	0.00023785	1.127	0.00064939	1.5397	0.00088725	576.2325704625358	44.968	0.49611	45.036	44.765	45.261	0.068569					24	17	2	0	0	0	0.3156	1	9986	9986		6.7232	0	1	306300			27344	11741	15695	15696	33927	33927					-0.11948304406132593
LSVFSTIKEYE	11	Unmodified	_LSVFSTIKEYE_					0	0	0		nc|ENSG00000075043|O43526-6|KCNQ2;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2	nc|ENSG00000075043|O43526-6|KCNQ2	nc|ENSG00000075043|O43526-6|KCNQ2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.7525329589844	3	439.230854	1314.67073	0.10088	4.431E-05	-1.959	-0.00086046	-1.8581	-0.00081615	439.22987844047566	58.028	0.46867	58.114	57.84	58.308	0.085621					22	16	2	0	0	0	0.33122	1	13959	13959		7.0371	2.9205	1	102200			27345	1035	15696	15697	33928	33928					0.02598498438032948
LSVGGLIFII	10	Unmodified	_LSVGGLIFII_					0	0	0			REV__ENSG00000136854|ENST00000373299|STXBP1	REV__ENSG00000136854|ENST00000373299|STXBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.789794921875	2	516.328611	1030.64267	0.51782	0.00026737	0.33991	0.00017551	0.85773	0.00044287	516.3288127488256	65.946	0.1955	66.035	65.973	66.169	0.088882					11	6	2	0	0	0	0.29519	1	16496	16496		15.847	0	1	158300	+		27346	15830	15697	15698	33929	33929					0.1285726503922433
LSVGLYFL	8	Unmodified	_LSVGLYFL_					0	0	0			REV__ENST00000284274.4_1_5:14696164-14696332:+|nuORF	REV__ENST00000284274.4_1_5:14696164-14696332:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.793212890625	2	456.265479	910.516405	-1.2459	-0.00056847	0.94942	0.00043319	-0.29651	-0.00013529	456.26577984908283	34.71	0.69762	34.71	34.472	35.17	0					46	24	2	0	0	0	0.34185	1	6851	6851		10.183	0.83596	1	589920	+		27347	19728	15698	15699	33930	33930					0.05756758533937045
LSVGNGFFYF	10	Unmodified	_LSVGNGFFYF_					0	0	0			REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF	REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3193359375	2	575.782025	1149.5495	0.44165	0.00025429	-0.96761	-0.00055713	-0.52596	-0.00030284	576.2830821713223	44.772	0.26741	44.841	44.739	45.006	0.068569					12	9	2	0	0	0	0.27772	1	9986	9986		14.838	0	1	120870	+		27348	21721	15699	15700	33931	33931					-0.01929659414008711
LSVGPDPLLEL	11	Unmodified	_LSVGPDPLLEL_					0	0	0			REV__nc|ENSG00000167077|Q5TIA1-6|MEI1	REV__nc|ENSG00000167077|Q5TIA1-6|MEI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.830810546875	2	576.829172	1151.64379	0.36074	0.00020809	2.15	0.0012402	2.5108	0.0014483	576.8301805442012	45.19	0.40395	45.265	45.042	45.446	0.075047					31	14	3	0	0	0	0.38623	1	10092	10092		13.042	0	1	887130	+		27349	17360	15700	15701	33932	33932					0.0740343461750399
LSVGPVALL	9	Unmodified	_LSVGPVALL_					0	0	0			REV__ENSG00000116176|ENST00000234798|TPSG1	REV__ENSG00000116176|ENST00000234798|TPSG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.75927734375	2	434.778754	867.542954	0.1933	8.4044E-05	-0.19226	-8.3589E-05	0.0010458	4.5471E-07	434.7786374644741	74.807	1.1938	74.807	74.6	75.794	0					75	42	3	0	0	0	0.24311	1	19162	19162		11.64	0	1	1100100	+		27350	14915	15701	15702	33933	33933					0.10388447425270897
LSVGPVALL	9	Unmodified	_LSVGPVALL_					0	0	0			REV__ENSG00000116176|ENST00000234798|TPSG1	REV__ENSG00000116176|ENST00000234798|TPSG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.759033203125	2	434.778754	867.542954	0.21997	9.564E-05	-0.23369	-0.0001016	-0.013712	-5.9615E-06	434.77862725900275	74.912	0.82729	74.881	74.642	75.47	-0.031487					60	30	3	0	0	0	0.25066	1	19143	19143		11.64	0	1	1154000	+		27351	14915	15701	15702	33934	33934					0.10388447425270897
LSVHMELFFS	10	Unmodified	_LSVHMELFFS_					0	0	0			REV__ENST00000434399.5_1_7:30601325-30601478:-|nuORF	REV__ENST00000434399.5_1_7:30601325-30601478:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.7711791992188	2	605.302267	1208.58998	0.79561	0.00048159	3.559	0.0021543	4.3546	0.0026358	605.3041571975327	45.34	0.22276	45.4	45.253	45.475	0.059834					12	7	3	0	0	0	0.26638	1	10137	10137		30.637	5.2372	1	107340	+		27352	20982	15702	15703	33935	33935					-0.005970610858867076
LSVHRAALAC	10	Unmodified	_LSVHRAALAC_					0	0	0		ENSG00000185271|ENST00000636854|KLHL33	ENSG00000185271|ENST00000636854|KLHL33	ENSG00000185271|ENST00000636854|KLHL33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.322021484375	2	520.787118	1039.55968	0.087633	4.5638E-05	0.14579	7.5925E-05	0.23342	0.00012156	520.7869562813981	12.863	0.39554	12.863	12.751	13.147	0					30	13	3	0	0	0	0.32054	1	236	236		3.2813	0.70383	1	92270			27353	7521	15703	15704	33936	33936					0.04148625039579201
LSVIACVAK	9	Unmodified	_LSVIACVAK_					0	0	0		ENST00000313733.7_1_20:60869099-60869312:+|nuORF	ENST00000313733.7_1_20:60869099-60869312:+|nuORF	ENST00000313733.7_1_20:60869099-60869312:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7560729980469	2	452.270238	902.525924	-0.20292	-9.1774E-05	-3.4284	-0.0015505	-3.6313	-0.0016423	452.26730373049935	13.433	0.17045	13.365	13.245	13.416	-0.067495					6	5	2	0	0	0	0.25622	1	429	429		7.2892	2.0586	1	5310			27354	9334	15704	15705	33937	33937					0.0707620354781966
LSVIFYMLA	9	Unmodified	_LSVIFYMLA_					0	0	0			REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7944946289062	2	528.793546	1055.57254	0.67551	0.00035721	-0.54012	-0.00028561	0.1354	7.1597E-05	528.793044259935	29.603	0.41908	29.603	29.441	29.86	0					34	14	3	0	0	0	0.10075	1	5301	5301		38.151	4.7063	1	301390	+		27355	21546	15705	15706	33938	33938					0.0469764337910874
LSVIFYMLA	9	Unmodified	_LSVIFYMLA_					0	0	0			REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2470703125	2	528.793546	1055.57254	0.45417	0.00024016	-0.5068	-0.00026799	-0.052628	-2.7829E-05	528.7931138811427	29.566	0.52637	29.579	29.331	29.858	0.012266					35	15	3	0	0	0	0.18943	1	5294	5294		30.225	3.0016	1	316570	+		27356	21546	15705	15706	33939	33939					0.0469764337910874
LSVILRSVH	9	Unmodified	_LSVILRSVH_					0	0	0		ENST00000424720.2_12:132824120-132905933:-|nuORF;ENSG00000185274|ENST00000333538|GALNT17;nc|ENSG00000182870|Q9HCQ5|GALNT9;ENSG00000182870|ENST00000328957|GALNT9	ENST00000424720.2_12:132824120-132905933:-|nuORF	ENST00000424720.2_12:132824120-132905933:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2611083984375	2	512.319109	1022.62366	0.088972	4.5582E-05	-0.074174	-3.8001E-05	0.014798	7.5813E-06	512.3190730312565	25.866	0.80392	25.844	25.552	26.356	-0.022238					46	28	2	0	0	0	0.25612	1	4260	4260		8.1555	0.8663	1	142960			27357	7327	15706	15707	33940	33940					0.11325728468182206
LSVKSQSAP	9	Unmodified	_LSVKSQSAP_					0	0	0			REV__ENST00000471105.5_1_1:201965436-201974841:+|nuORF	REV__ENST00000471105.5_1_1:201965436-201974841:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.75830078125	2	458.758549	915.502546	-0.14656	-6.7234E-05	0.091667	4.2053E-05	-0.054889	-2.5181E-05	458.7585559023915	23.066	0.85387	23.066	22.815	23.669	0					58	29	3	0	0	0	0.22188	1	3345	3345		20.454	0.039092	1	165990	+		27358	21355	15707	15708	33941	33941					0.041414810348555875
LSVLGTEELR	10	Unmodified	_LSVLGTEELR_					0	0	0		nc|ENSG00000163001|Q96G28-2|CFAP36;ENSG00000163001|ENST00000349456|CFAP36;ENST00000481791.1_1_2:55771313-55772141:+|nuORF	nc|ENSG00000163001|Q96G28-2|CFAP36	nc|ENSG00000163001|Q96G28-2|CFAP36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.8169555664062	2	558.816596	1115.61864	0.41236	0.00023043	-0.33867	-0.00018925	0.073691	4.118E-05	558.8163574988844	19.9	0.72781	19.844	19.544	20.272	-0.055693					82	26	4	0	0	0	0.37133	1	2291	2291		8.7454	0	1	694780			27359	5639	15708	15709	33942	33942					0.06545379814906482
LSVLKNQV	8	Unmodified	_LSVLKNQV_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2633361816406	2	450.779285	899.544017	-0.20031	-9.0295E-05	0.33484	0.00015094	0.13453	6.0645E-05	450.77940648375426	38.86	0.13743	38.86	38.765	38.903	0					6	4	2	0	0	0	0.34092	1	8148	8148		2.0598	0	1	40144	+		27360	13520	15709	15710	33943	33943					0.09022661794176656
LSVLKWAFMK	10	Unmodified	_LSVLKWAFMK_					0	0	0			REV__ENST00000548760.2_1_12:98908351-98908465:-|nuORF	REV__ENST00000548760.2_1_12:98908351-98908465:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5437316894531	3	408.238739	1221.69439	-0.098238	-4.0105E-05	-2.2473	-0.00091743	-2.3455	-0.00095754	408.2379130499747	24.669	0.18724	24.669	24.575	24.762	0					7	5	2	0	0	0	0.31701	1	3817	3817		7.4771	0	1	30713	+		27361	22191	15710	15711	33944	33944					0.09240685461463727
LSVLRECLGGF	11	Unmodified	_LSVLRECLGGF_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.7725830078125	2	597.320991	1192.62743	0.70717	0.00042241	-0.72565	-0.00043344	-0.018475	-1.1036E-05	597.3207107182456	74.976	0.38844	74.976	74.765	75.154	0					16	13	2	0	0	0	0.3239	1	19286	19286		17.113	3.2068	1	189560	+		27362	19226	15711	15712	33945	33945					0.03882030179715912
LSVLRECLGGF	11	Unmodified	_LSVLRECLGGF_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.7720947265625	2	597.320991	1192.62743	0.51898	0.00031	-0.7748	-0.00046281	-0.25582	-0.00015281	597.3204665114464	74.947	0.56533	75	74.81	75.375	0.052361					30	20	3	0	0	0	0.31312	1	19204	19204		21.537	12.792	1	256130	+		27363	19226	15711	15712	33946	33946					0.03882030179715912
LSVLRECLGGF	11	Unmodified	_LSVLRECLGGF_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.7720947265625	2	597.320991	1192.62743	0.70422	0.00042064	-0.57859	-0.00034561	0.12562	7.5038E-05	597.3206572949206	75.015	0.4482	74.983	74.838	75.286	-0.031487					27	16	2	0	0	0	0.3239	1	19227	19227		17.113	8.9574	1	259850	+		27364	19226	15711	15712	33947	33947					0.03882030179715912
LSVLRNAIK	9	Unmodified	_LSVLRNAIK_					0	0	0		ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7495422363281	2	507.326934	1012.63931	0.13784	6.9928E-05	-0.75408	-0.00038256	-0.61624	-0.00031264	507.32646476098887	27.424	0.417	27.424	27.172	27.589	0					25	13	3	0	0	0	0.25706	1	4613	4613		6.7232	0	1	89125			27365	8183	15712	15713	33948	33948					0.1335001498521251
LSVLSGEWAA	10	Unmodified	_LSVLSGEWAA_					0	0	0		ENST00000268989.7_1_17:2267943-2270571:+|nuORF	ENST00000268989.7_1_17:2267943-2270571:+|nuORF	ENST00000268989.7_1_17:2267943-2270571:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.78515625	2	516.771657	1031.52876	0.49855	0.00025763	-3.2596	-0.0016845	-2.761	-0.0014268	517.2712815830477	51.406	0.28308	51.406	51.198	51.481	0					18	10	3	0	0	0	0.2593	1	12011	12011		25.399	2.2509	1	351500			27366	9069	15713	15714	33949	33949					0.014257502063173888
LSVLTVGFGL	10	Unmodified	_LSVLTVGFGL_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.82891845703125	2	503.302593	1004.59063	0.41889	0.00021083	-0.23917	-0.00012038	0.17972	9.0452E-05	503.3023487767892	51.166	0.52872	51.213	50.9	51.429	0.046574					35	19	2	0	0	0	0.31237	1	11979	11979		16.149	2.2431	1	534660			27367	858	15714	15715	33950	33950					0.08852101625473097
LSVNNFTLK	9	Unmodified	_LSVNNFTLK_					0	0	0		ENST00000416179.1_1_21:43916935-43917360:+|nuORF	ENST00000416179.1_1_21:43916935-43917360:+|nuORF	ENST00000416179.1_1_21:43916935-43917360:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8070678710938	2	518.295299	1034.57605	0.23483	0.00012171	-0.18958	-9.8258E-05	0.04525	2.3453E-05	518.2952126267462	38.362	0.59187	38.362	38.149	38.741	0					31	20	3	0	0	0	0.25323	1	7953	7953		3.2813	0	1	378290			27368	10316	15715	15716	33951	33951					0.06014029477319127
LSVNNFTLK	9	Unmodified	_LSVNNFTLK_					0	0	0		ENST00000416179.1_1_21:43916935-43917360:+|nuORF	ENST00000416179.1_1_21:43916935-43917360:+|nuORF	ENST00000416179.1_1_21:43916935-43917360:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	518.295299	1034.57605	0.37896	0.00019641	-0.28757	-0.00014904	0.09139	4.7367E-05	518.2951032441531	38.25	0.38536	38.341	38.183	38.568	0.090885	0.0060074	-7.8265E-05	NaN	3.2813	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264910			27369	10316	15715	15716							0.06014029477319127
LSVNQPLLE	9	Unmodified	_LSVNQPLLE_					0	0	0			REV__ENST00000369155.3_1_1:149856582-149856696:-|nuORF	REV__ENST00000369155.3_1_1:149856582-149856696:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2975769042969	2	506.787307	1011.56006	-0.13247	-6.7134E-05	0.60444	0.00030632	0.47197	0.00023919	506.7875301882269	61.677	0.41199	61.774	61.592	62.004	0.096985					26	14	2	0	0	0	0.1939	1	15201	15201		30.637	0	1	301310	+		27370	20353	15716	15717	33952	33952					0.05474323240434842
LSVPPPISPV	10	Unmodified	_LSVPPPISPV_					0	0	0		nc|ENSG00000175727|Q9HAP2-5|MLXIP	nc|ENSG00000175727|Q9HAP2-5|MLXIP	nc|ENSG00000175727|Q9HAP2-5|MLXIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.8289794921875	2	503.302593	1004.59063	0.55543	0.00027955	-0.35819	-0.00018028	0.19724	9.9271E-05	503.3022783728431	51.162	0.61064	51.162	50.846	51.456	0					36	22	2	0	0	0	0.24708	1	11958	11958		22.736	8.8302	1	503830			27371	12851	15717	15718	33953	33953					0.08852101625461728
LSVPWSSPN	9	Unmodified	_LSVPWSSPN_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.28668212890625	2	493.750724	985.486896	0.43411	0.00021434	0.49274	0.00024329	0.92685	0.00045763	493.750885639745	43.647	0.42811	43.731	43.463	43.891	0.083992					18	15	2	0	0	0	0.24311	1	9614	9614		11.64	5.8799	1	260290	+		27372	15113	15718	15719	33954	33954					-0.006428054821981277
LSVQLKPEV	9	Unmodified	_LSVQLKPEV_					0	0	0		ENSG00000125826|ENST00000356286|RBCK1	ENSG00000125826|ENST00000356286|RBCK1	ENSG00000125826|ENST00000356286|RBCK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.73638916015625	2	506.8055	1011.59645	0.45573	0.00023097	-2.1847	-0.0011072	-1.729	-0.00087626	506.8045194993738	42.089	0.40398	42.181	41.981	42.385	0.091362					21	13	2	0	0	0	0.22061	1	9089	9089		18.146	3.3081	1	216960			27373	3235	15719	15720	33955	33955					0.09111200137135711
LSVRISKVL	9	Unmodified	_LSVRISKVL_					0	0	0			REV__ENST00000448177.1_1_3:25832680-25833374:+|nuORF	REV__ENST00000448177.1_1_3:25832680-25833374:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.30218505859375	2	507.837134	1013.65972	0.14165	7.1937E-05	-0.21408	-0.00010872	-0.072428	-3.6781E-05	507.8369841586256	48.945	0.40837	48.977	48.801	49.209	0.032043					22	14	2	0	0	0	0.2322	1	11268	11268		14.838	0	1	399990	+		27374	21093	15720	15721	33956	33956					0.15343185645053836
LSVSASVLVP	10	Unmodified	_LSVSASVLVP_					0	0	0		nc|ENSG00000085185|Q5H9F3-1|BCORL1;ENSG00000085185|ENST00000540052|BCORL1;nc|ENSG00000085185|Q5H9F3-4|BCORL1;BCORL1|p.R1083Pfs*4|1|0.16|ENSG00000085185|chrX:130016019-130016020|-/CTTG|frameshift_variant	nc|ENSG00000085185|Q5H9F3-1|BCORL1	nc|ENSG00000085185|Q5H9F3-1|BCORL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	486.292225	970.569897	0.48122	0.00023401	-1.0606	-0.00051578	-0.57941	-0.00028176	486.2919186610774	44.912	0.41154	44.912	44.71	45.121	0					18	14	2	0	0	0	0.26638	1	9968	9968		30.637	1.555	1	83676			27375	1253	15721	15722	33957	33957					0.08343511245800528
LSVSFRFPDHW	11	Unmodified	_LSVSFRFPDHW_					0	0	0		ENST00000374466.3_1_10:43671448-43678704:+|nuORF	ENST00000374466.3_1_10:43671448-43678704:+|nuORF	ENST00000374466.3_1_10:43671448-43678704:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7403259277344	3	464.234933	1389.68297	0.1768	8.2075E-05	1.2179	0.00056537	1.3946	0.00064744	464.56989009511017	37.711	0.37538	37.809	37.578	37.953	0.097527					18	13	2	0	0	0	0.33296	1	7806	7806		2.6312	1.4164	1	193680			27376	9894	15722	15723	33958	33958					0.0037157969170493743
LSVSGPYVL	9	Unmodified	_LSVSGPYVL_					0	0	0			REV__nc|ENSG00000183260|Q9H3Z7|ABHD16B	REV__nc|ENSG00000183260|Q9H3Z7|ABHD16B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7554626464844	2	467.765843	933.517133	0.13893	6.4986E-05	-0.31938	-0.0001494	-0.18046	-8.4411E-05	467.7655055264343	65.444	0.72888	65.433	65.098	65.827	-0.011337					50	26	3	0	0	0	0.20344	1	16319	16319		23.148	1.4018	1	388230	+		27377	23130	15723	15724	33959	33959					0.04771553183002197
LSVSGPYVL	9	Unmodified	_LSVSGPYVL_					0	0	0			REV__nc|ENSG00000183260|Q9H3Z7|ABHD16B	REV__nc|ENSG00000183260|Q9H3Z7|ABHD16B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	467.765843	933.517133	-0.01352	-6.324E-06	-0.32053	-0.00014993	-0.33405	-0.00015626	467.765509077252	65.477	0.96662	65.477	64.96	65.927	0	0.011426	-0.00017331	NaN	23.148	58	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428730	+		27378	23130	15723	15724							0.04771553183002197
LSVSGPYVL	9	Unmodified	_LSVSGPYVL_					0	0	0			REV__nc|ENSG00000183260|Q9H3Z7|ABHD16B	REV__nc|ENSG00000183260|Q9H3Z7|ABHD16B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	467.765843	933.517133	-0.30581	-0.00014305	0.12197	5.7054E-05	-0.18383	-8.5992E-05	467.7659193249764	65.398	0.6976	65.487	65.086	65.784	0.088875	0.021276	0.00024066	NaN	23.148	43	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431470	+		27379	23130	15723	15724							0.04771553183002197
LSVSGPYVL	9	Unmodified	_LSVSGPYVL_					0	0	0			REV__nc|ENSG00000183260|Q9H3Z7|ABHD16B	REV__nc|ENSG00000183260|Q9H3Z7|ABHD16B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	467.765843	933.517133	0.13893	6.4986E-05	-0.31938	-0.0001494	-0.18046	-8.4411E-05	467.7655055264343	65.444	0.72888	65.433	65.098	65.827	-0.011337	-0.032702	-0.00017224	NaN	23.148	50	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388230	+		27380	23130	15723	15724							0.04771553183002197
LSVSPFLGH	9	Unmodified	_LSVSPFLGH_					0	0	0		ENST00000274311.2_1_5:52096140-52096299:+|nuORF	ENST00000274311.2_1_5:52096140-52096299:+|nuORF	ENST00000274311.2_1_5:52096140-52096299:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.75335693359375	2	478.763635	955.512717	0.30773	0.00014733	0.24168	0.00011571	0.5494	0.00026303	478.76363825194517	58.691	0.70952	58.783	58.474	59.183	0.091305					55	24	3	0	0	0	0.22883	1	14299	14299		19.439	1.304	1	979700			27381	9098	15724	15725	33960	33960					0.033180887601020004
LSVSPFLGH	9	Unmodified	_LSVSPFLGH_					0	0	0		ENST00000274311.2_1_5:52096140-52096299:+|nuORF	ENST00000274311.2_1_5:52096140-52096299:+|nuORF	ENST00000274311.2_1_5:52096140-52096299:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2899169921875	2	478.763635	955.512717	-0.10758	-5.1507E-05	0.66035	0.00031615	0.55277	0.00026465	478.7637639784387	18.698	0.38595	18.639	18.402	18.788	-0.058174					18	13	2	0	0	0	0.25417	1	1944	1944		8.5933	0	1	49689			27382	9098	15724	15725	33961	33961					0.033180887601020004
LSVSYSTPSF	10	Unmodified	_LSVSYSTPSF_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.7955322265625	2	544.268947	1086.52334	0.49893	0.00027155	0.24112	0.00013123	0.74005	0.00040279	544.26885056829	52.591	0.5992	52.59	52.358	52.958	-0.00080872					35	21	2	0	0	0	0.30586	1	12286	12286		19.257	1.1106	1	1002700	+		27383	13940	15725	15726	33962	33962					-0.016459733761621465
LSVVARLI	8	Unmodified	_LSVVARLI_					0	0	0			REV__ENSG00000181074|ENST00000641350|OR52N4	REV__ENSG00000181074|ENST00000641350|OR52N4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.7740783691406	2	435.792195	869.569838	0.069024	3.008E-05	-0.38698	-0.00016864	-0.31796	-0.00013856	435.79198929041615	56.982	0.47475	56.982	56.849	57.323	0					25	17	2	0	0	0	0.32435	1	13690	13690		23.148	0	1	186960	+		27384	18136	15726	15727	33963	33963					0.12983556036476784
LSVVKKLPVP	10	Unmodified	_LSVVKKLPVP_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.364013671875	2	540.362985	1078.71142	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.097	1	38.097	37.597	38.597	0								0	0	0	0.37739	1	7910	7910		3.2813	0.28607	1				27385	5064;484;7523	15727	15728	33964	33964					0.17520929338957103
LSVVLLKAP	9	Unmodified	_LSVVLLKAP_					0	0	0			REV__nc|ENSG00000137337|Q14676-2|MDC1	REV__nc|ENSG00000137337|Q14676-2|MDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2790222167969	2	470.315503	938.616454	0.087786	4.1287E-05	0.14231	6.6932E-05	0.2301	0.00010822	470.3154606842704	57.574	0.90938	57.556	57.229	58.138	-0.0172					63	33	3	0	0	0	0.2322	1	13798	13798		20.454	3.5113	1	1281700	+		27386	15855	15728	15729	33965	33965					0.14468995867753165
LSVYTLTVITL	11	Unmodified	_LSVYTLTVITL_					0	0	0		nc|ENSG00000138039|P22888-2|LHCGR;ENSG00000138039|ENST00000294954|LHCGR;nc|ENSG00000165409|P16473|TSHR;ENSG00000165409|ENST00000298171|TSHR	nc|ENSG00000138039|P22888-2|LHCGR;nc|ENSG00000165409|P16473|TSHR	nc|ENSG00000165409|P16473|TSHR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5644836425781	3	408.247957	1221.72204	0.039843	1.6266E-05	-2.6892	-0.0010979	-2.6494	-0.0010816	408.5811249790751	36.147	0.10377	36.147	36.065	36.168	0					5	3	2	0	0	0	0.32774	1	7307	7307		6.6235	2.0946	1	57386			27387	4109;5957	15729	15730	33966	33966					0.12004867202699643
LSVYTLTVITL	11	Unmodified	_LSVYTLTVITL_					0	0	0		nc|ENSG00000138039|P22888-2|LHCGR;ENSG00000138039|ENST00000294954|LHCGR;nc|ENSG00000165409|P16473|TSHR;ENSG00000165409|ENST00000298171|TSHR	nc|ENSG00000138039|P22888-2|LHCGR;nc|ENSG00000165409|P16473|TSHR	nc|ENSG00000165409|P16473|TSHR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	408.247957	1221.72204	0.12139	4.9557E-05	-1.7757	-0.00072491	-1.6543	-0.00067535	408.58153828022415	35.742	0.49197	35.824	35.57	36.062	0.082355	-0.099387	-0.00022075	NaN	6.6235	60	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446040			27388	4109;5957	15729	15730							0.12004867202699643
LSVYTLTVITL	11	Unmodified	_LSVYTLTVITL_					0	0	0		nc|ENSG00000138039|P22888-2|LHCGR;ENSG00000138039|ENST00000294954|LHCGR;nc|ENSG00000165409|P16473|TSHR;ENSG00000165409|ENST00000298171|TSHR	nc|ENSG00000138039|P22888-2|LHCGR;nc|ENSG00000165409|P16473|TSHR	nc|ENSG00000165409|P16473|TSHR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	408.247957	1221.72204	0.038017	1.552E-05	-1.3319	-0.00054373	-1.2938	-0.00052821	408.24722343208407	35.713	0.60187	35.8	35.568	36.17	0.08625	-0.12383	0.00032278	NaN	6.6235	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411810			27389	4109;5957	15729	15730							0.12004867202699643
LSWEKLKGHL	10	Unmodified	_LSWEKLKGHL_					0	0	0			REV__chr15:101332031-101339617|180|28.48|0.42|6.1|-|2|PCSK6,None|1	REV__chr15:101332031-101339617|180|28.48|0.42|6.1|-|2|PCSK6,None|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.8694763183594	3	404.236274	1209.68699	0.12655	5.1157E-05	-0.80739	-0.00032638	-0.68084	-0.00027522	404.23588612265127	44.605	0.66101	44.605	44.33	44.991	0					32	23	2	0	0	0	0.3183	1	9980	9980		5.4027	2.3304	1	191090	+		27390	13182	15730	15731	33967	33967					0.09053669185436775
LSWEKLKGHL	10	Unmodified	_LSWEKLKGHL_					0	0	0			REV__chr15:101332031-101339617|180|28.48|0.42|6.1|-|2|PCSK6,None|1	REV__chr15:101332031-101339617|180|28.48|0.42|6.1|-|2|PCSK6,None|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.869384765625	3	404.236274	1209.68699	-0.0080953	-3.2724E-06	-1.1055	-0.00044687	-1.1136	-0.00045014	404.23583728568894	44.289	0.53376	44.357	44.093	44.627	0.068569					31	19	2	0	0	0	0.31746	1	9826	9826		7.0371	0.41363	1	242610	+		27391	13182	15730	15731	33968	33968					0.09053669185436775
LSWFFKIPFVR	11	Unmodified	_LSWFFKIPFVR_					0	0	0		ENSG00000204195|ENST00000374521|AWAT1	ENSG00000204195|ENST00000374521|AWAT1	ENSG00000204195|ENST00000374521|AWAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2772521972656	3	480.611452	1438.81253	0.44251	0.00021268	-0.48625	-0.0002337	-0.043743	-2.1024E-05	480.61123608905586	47.767	0.47143	47.767	47.352	47.823	0					31	16	2	0	0	0	0.33296	1	10809	10809		2.6312	0.19645	1	672630			27392	8204	15731	15732	33969	33969					0.11067381041607405
LSWGTLVTL	9	Unmodified	_LSWGTLVTL_					0	0	0			REV__ENST00000294072.8_2_11:61116243-61116444:-|nuORF	REV__ENST00000294072.8_2_11:61116243-61116444:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.8211975097656	2	495.286943	988.559333	0.42891	0.00021243	-1.9911	-0.00098617	-1.5622	-0.00077374	495.28578611112977	70.896	0.41506	70.896	70.683	71.098	0					28	14	3	0	0	0	0.21389	1	18006	18006		19.257	3.4098	1	208190	+		27393	19770	15732	15733	33970	33970					0.06459528591392427
LSWGTLVTL	9	Unmodified	_LSWGTLVTL_					0	0	0			REV__ENST00000294072.8_2_11:61116243-61116444:-|nuORF	REV__ENST00000294072.8_2_11:61116243-61116444:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	495.286943	988.559333	0.41927	0.00020766	-2.3759	-0.0011767	-1.9566	-0.00096908	495.2856979711966	70.871	0.57424	70.932	70.574	71.148	0.060783	0.029013	-0.00012994	NaN	18.146	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166330	+		27394	19770	15732	15733							0.06459528591392427
LSWGTLVTL	9	Unmodified	_LSWGTLVTL_					0	0	0			REV__ENST00000294072.8_2_11:61116243-61116444:-|nuORF	REV__ENST00000294072.8_2_11:61116243-61116444:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	495.286943	988.559333	0.45292	0.00022432	-2.2272	-0.0011031	-1.7743	-0.00087877	495.28592669239276	70.906	0.43844	70.881	70.611	71.049	-0.024872	-0.022352	1.7354E-05	NaN	18.146	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184280	+		27395	19770	15732	15733							0.06459528591392427
LSWLLPPQER	10	Unmodified	_LSWLLPPQER_					0	0	0		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.880126953125	3	413.567912	1237.68191	0.059421	2.4575E-05	-0.56549	-0.00023387	-0.50607	-0.00020929	413.5677316586797	15.517	0.44101	15.407	15.312	15.753	-0.10981					16	14	2	0	0	0	0.32015	1	1045	1045		5.0475	1.9753	1	31709			27396	4472	15733	15734	33971	33971					0.07257365322789155
LSWLNKNV	8	Unmodified	_LSWLNKNV_					0	0	0			REV__ENST00000519705.1_1_8:43052051-43054709:+|nuORF	REV__ENST00000519705.1_1_8:43052051-43054709:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.805419921875	2	487.276909	972.539266	0.31888	0.00015538	-0.0093166	-4.5397E-06	0.30956	0.00015084	487.2767691480803	62.752	0.50711	62.752	62.476	62.984	0					30	18	2	0	0	0	0.32886	1	15508	15508		10.824	0	1	301420	+		27397	17207	15734	15735	33972	33972					0.0518977765142381
LSWLRKSYLR	10	Unmodified	_LSWLRKSYLR_					0	0	0		nc|ENSG00000152404|Q2TBE0-3|CWF19L2;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;ENSG00000152404|ENST00000282251|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7878112792969	3	441.262823	1320.76664	0.51548	0.00022746	0.012721	5.6131E-06	0.5282	0.00023307	441.2628526317472	36.827	0.2962	36.92	36.764	37.06	0.093018					12	10	2	0	0	0	0.32015	1	7516	7516		5.0475	2.6127	1	96364			27398	5019	15735	15736	33973	33973					0.11908735859424269
LSWLVWLL	8	Unmodified	_LSWLVWLL_					0	0	0		ENSG00000158859|ENST00000367996|ADAMTS4;nc|ENSG00000158859|O75173-2|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2391357421875	2	515.310221	1028.60589	0.56477	0.00029103	-0.93402	-0.00048131	-0.36925	-0.00019028	515.309575544974	55.014	0.43218	55.014	54.917	55.35	0					22	15	2	0	0	0	0.33245	1	13149	13149		13.508	0	1	306300			27399	5376	15736	15737	33974	33974					0.0927301321332834
LSWPLTEQERV	11	Unmodified	_LSWPLTEQERV_					0	0	0			REV__ENST00000490931.1_1_1:11171595-11175545:-|nuORF	REV__ENST00000490931.1_1_1:11171595-11175545:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.7583312988281	3	453.241865	1356.70376	0.04072	1.8456E-05	-2.7355	-0.0012399	-2.6948	-0.0012214	453.2411574365156	23.996	0.28526	23.996	23.8	24.085	0					21	9	3	0	0	0	0.33303	1	3614	3614		2.4348	1.1051	1	54355	+		27400	21607	15737	15738	33975	33975					0.039681252806758494
LSWRKPGY	8	Unmodified	_LSWRKPGY_					0	0	0			REV__nc|ENSG00000185697|P10243-2|MYBL1	REV__nc|ENSG00000185697|P10243-2|MYBL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2973327636719	2	503.777077	1005.5396	0.2182	0.00010993	0.98299	0.00049521	1.2012	0.00060513	503.7783145364042	23.024	0.72382	22.979	22.501	23.225	-0.044867					73	25	4	0	0	0	0.45307	1	3214	3214		4.756	0.42677	1	112660	+		27401	18401	15738	15739	33976	33976					0.03705197371277791
LSWRLPLLI	9	Unmodified	_LSWRLPLLI_					0	0	0		IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2702026367188	2	555.855327	1109.6961	0.1775	9.8666E-05	0.055182	3.0673E-05	0.23268	0.00012934	555.8552643447505	33.14	0.5613	33.14	32.895	33.456	0					33	19	3	0	0	0	0.25622	1	6399	6399		7.2892	7.2892	1	166330			27402	1585	15739	15740	33977	33977					0.14564062541739986
LSWRRGLMGV	10	Unmodified	_LSWRRGLMGV_					0	0	0		nc|ENSG00000149930|Q9UL54-3|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;ENSG00000149930|ENST00000308893|TAOK2	nc|ENSG00000149930|Q9UL54-3|TAOK2	nc|ENSG00000149930|Q9UL54-3|TAOK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.3270874023438	2	587.829317	1173.64408	0.46297	0.00027215	2.8553	0.0016784	3.3182	0.0019505	588.3312292635903	59.086	0.96459	59.072	58.523	59.488	-0.014271					73	33	4	0	0	0	0.31629	1	14485	14485		10.074	0.6908	1	1415100			27403	4899	15740	15741	33978	33978					0.0642057585632756
LSWRRRRWKRK	11	Unmodified	_LSWRRRRWKRK_					0	0	0		ENST00000557821.5_1_15:40588574-40589003:-|nuORF;ENST00000260402.7_1_15:40588574-40589003:-|nuORF	ENST00000557821.5_1_15:40588574-40589003:-|nuORF	ENST00000557821.5_1_15:40588574-40589003:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.2263488769531	4	407.752468	1626.98076	-0.21518	-8.7741E-05	-1.3281	-0.00054155	-1.5433	-0.00062929	407.7520231302582	25.283	0.20679	25.227	25.074	25.281	-0.055931					9	6	2	0	0	0	0.3333	1	3993	3993		1.3296	1.2463	1	31849			27404	8957	15741	15742	33979	33979					0.1923530079864122
LSWRSGLLWG	10	Unmodified	_LSWRSGLLWG_					0	0	0		ENST00000556518.5_2_14:65878593-65896974:+|nuORF	ENST00000556518.5_2_14:65878593-65896974:+|nuORF	ENST00000556518.5_2_14:65878593-65896974:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.3226318359375	2	587.822015	1173.62948	0.46473	0.00027318	1.8123	0.0010653	2.277	0.0013385	587.8236055790672	59.581	0.62484	59.57	59.343	59.968	-0.011486					50	21	3	0	0	0	0.3144	1	14501	14501		13.042	9.446	1	1208200			27405	11861	15742	15743	33980	33980					0.049608269798454785
LSWRVQSYELI	11	Unmodified	_LSWRVQSYELI_					0	0	0		ENST00000255305.10_3_13:21370372-21370918:-|nuORF	ENST00000255305.10_3_13:21370372-21370918:-|nuORF	ENST00000255305.10_3_13:21370372-21370918:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.78594970703125	3	465.253993	1392.74015	-0.51571	-0.00023993	0.56756	0.00026406	0.051855	2.4126E-05	465.2542245270653	34.356	0.59306	34.356	34.104	34.697	0					44	20	3	0	0	0	0.33287	1	6848	6848		2.8433	0	1	268470			27406	8923	15743	15744	33981	33981					0.05949002177453622
LSWSPDGH	8	Unmodified	_LSWSPDGH_					0	0	0		ENSG00000100084|ENST00000263208|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF;nc|ENSG00000100084|P54198-2|HIRA	ENSG00000100084|ENST00000263208|HIRA	ENSG00000100084|ENST00000263208|HIRA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.779541015625	2	449.706317	897.398081	-1.2608	-0.00056701	-0.84844	-0.00038155	-2.1093	-0.00094855	449.70576882392	34.907	0.58081	34.907	34.646	35.227	0					35	20	2	0	0	0	0.31375	1	6909	6909		26.341	0	1	345140			27407	1529	15744	15745	33982	33982					-0.05472220721856047
LSWSPDGH	8	Unmodified	_LSWSPDGH_					0	0	0		ENSG00000100084|ENST00000263208|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF;nc|ENSG00000100084|P54198-2|HIRA	ENSG00000100084|ENST00000263208|HIRA	ENSG00000100084|ENST00000263208|HIRA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	449.706317	897.398081	-1.4341	-0.00064491	-0.63439	-0.00028529	-2.0685	-0.0009302	449.70596202750505	34.762	0.63014	34.838	34.631	35.261	0.075306	-0.010402	0.00030386	NaN	26.341	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339150			27408	1529	15744	15745							-0.05472220721856047
LSWSPDGH	8	Unmodified	_LSWSPDGH_					0	0	0		ENSG00000100084|ENST00000263208|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF;nc|ENSG00000100084|P54198-2|HIRA	ENSG00000100084|ENST00000263208|HIRA	ENSG00000100084|ENST00000263208|HIRA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	449.706317	897.398081	-0.61958	-0.00027863	-1.3943	-0.00062704	-2.0139	-0.00090566	449.7055801932787	34.723	0.66157	34.8	34.533	35.195	0.077381	-0.048209	-0.00037964	NaN	26.341	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323890			27409	1529	15744	15745							-0.05472220721856047
LSWTADLLRVA	11	Unmodified	_LSWTADLLRVA_					0	0	0			REV__ENST00000587820.1_1_17:75137612-75137723:+|nuORF	REV__ENST00000587820.1_1_17:75137612-75137723:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.22784423828125	3	415.571434	1243.69247	0.32203	0.00013383	0.21201	8.8105E-05	0.53404	0.00022193	415.5715464931967	30.163	0.5376	30.191	29.901	30.439	0.027946					42	18	3	0	0	0	0.33287	1	5400	5400		0.45452	0	1	257540	+		27410	22538	15745	15746	33983	33983					0.0803734797721063
LSWTLASVT	9	Unmodified	_LSWTLASVT_					0	0	0			REV__nc|ENSG00000162976|Q8N755-2|SLC66A3	REV__nc|ENSG00000162976|Q8N755-2|SLC66A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.8135070800781	2	489.26875	976.522947	0.9684	0.00047381	-1.2416	-0.00060748	-0.27322	-0.00013368	489.26782014261033	47.24	0.50505	47.295	47.093	47.598	0.054371					23	18	2	0	0	0	0.17611	1	10682	10682		14.838	0	1	331010	+		27411	17028	15746	15747	33984	33984					0.033746516946507654
LSWWIPYS	8	Unmodified	_LSWWIPYS_					0	0	0			REV__ENSG00000154342|ENST00000284523|WNT3A	REV__ENSG00000154342|ENST00000284523|WNT3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.29296875	2	526.26601	1050.51747	0.36679	0.00019303	4.3871	0.0023088	4.7539	0.0025018	526.2687601860839	17.909	0.36306	17.848	17.588	17.951	-0.060429					16	12	2	0	0	0	0.34337	1	1785	1785		5.2307	0.90143	1	16387	+		27412	16662	15747	15748	33985	33985					-0.00577027097165228
LSWYCLEMY	9	Unmodified	_LSWYCLEMY_					0	0	0			REV__ENST00000517845.5_2_8:126091002-126094647:-|nuORF	REV__ENST00000517845.5_2_8:126091002-126094647:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.8694763183594	3	403.176928	1206.50895	0.025399	1.024E-05	-2.9472	-0.0011883	-2.9218	-0.001178	403.5097339875138	45.059	0.6469	45.059	44.829	45.476	0					34	23	2	0	0	0	0.25689	1	9980	9980		4.5289	2.7866	1	145520	+		27413	21858	15748	15749	33986	33986					-0.08604085120282434
LSWYCLEMY	9	Unmodified	_LSWYCLEMY_					0	0	0			REV__ENST00000517845.5_2_8:126091002-126094647:-|nuORF	REV__ENST00000517845.5_2_8:126091002-126094647:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	403.176928	1206.50895	-0.094711	-3.8185E-05	-4.0045	-0.0016145	-4.0992	-0.0016527	403.17606652260497	44.878	0.49289	44.947	44.682	45.175	0.068569	-0.056061	-0.00097736	NaN	4.5289	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161990	+		27414	21858	15748	15749							-0.08604085120282434
LSYDLLCLI	9	Unmodified	_LSYDLLCLI_					0	0	0			REV__ENST00000530724.1_1_11:6471537-6472266:-|nuORF	REV__ENST00000530724.1_1_11:6471537-6472266:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3616333007812	2	526.788461	1051.56237	0.54694	0.00028812	2.9281	0.0015425	3.475	0.0018306	526.7905523231501	30.587	0.1494	30.587	30.525	30.674	0					6	4	2	0	0	0	0.24913	1	5623	5623		12.532	1.4171	1	37349	+		27415	22011	15749	15750	33987	33987					0.038650356538710184
LSYFKMAGI	9	Unmodified	_LSYFKMAGI_					0	0	0		ENST00000471702.2_2_3:132339980-132400782:-|nuORF;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-3|ACAD11;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	ENST00000471702.2_2_3:132339980-132400782:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2660522460938	2	515.275521	1028.53649	0.083314	4.2929E-05	0.94579	0.00048734	1.0291	0.00053027	515.2757341578739	59.946	0.17677	59.934	59.85	60.026	-0.011486					7	5	2	0	0	0	0.25314	1	14620	14620		15.847	0	1	262850			27416	8519	15750	15751	33988	33988					0.02336186202251156
LSYFYEGHSF	10	Unmodified	_LSYFYEGHSF_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.2188415527344	3	417.188989	1248.54514	-0.16768	-6.9954E-05	0.090227	3.7642E-05	-0.077454	-3.2313E-05	417.1889682806525	38.254	0.83896	38.254	38.034	38.873	0					68	29	3	0	0	0	0.31207	1	7983	7983		3.3196	0	1	383990	+		27417	19226	15751	15752	33989	33989					-0.06919168627564432
LSYHIPFLVSS	11	Unmodified	_LSYHIPFLVSS_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENST00000492058.1_1_2:183799470-183800113:-|nuORF	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.564208984375	3	421.564168	1261.67067	-0.10248	-4.3201E-05	-0.12286	-5.1793E-05	-0.22534	-9.4994E-05	421.56406045463126	23.57	0.62147	23.498	23.257	23.879	-0.072559					39	21	2	0	0	0	0.43198	1	3499	3499		7.0371	0.41363	1	166480			27418	760	15752	15753	33990	33990					0.05030543228667739
LSYIIPNLKPI	11	Unmodified	_LSYIIPNLKPI_					0	0	0			REV__ENSG00000172489|ENST00000313033|OR5T3	REV__ENSG00000172489|ENST00000313033|OR5T3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.1972351074219	3	424.26383	1269.76966	-0.032102	-1.362E-05	0.43184	0.00018321	0.39974	0.0001696	424.2638574003347	37.782	0.43381	37.873	37.638	38.072	0.090881					27	15	2	0	0	0	0.33287	1	7754	7754		1.3296	0.55311	1	199560	+		27419	17717	15753	15754	33991	33991					0.1455656619355068
LSYIKKGMIKL	11	Unmodified	_LSYIKKGMIKL_					0	0	0			REV__ENST00000371833.3_1_1:49224889-49227061:-|nuORF	REV__ENST00000371833.3_1_1:49224889-49227061:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.5946044921875	3	431.936948	1292.78901	-0.19356	-8.3607E-05	2.6332	0.0011374	2.4397	0.0010538	432.2724059725326	25.094	0.18767	25.038	24.946	25.134	-0.055931					8	6	2	0	0	0	0.33287	1	3945	3945		0.45452	0	1	37817	+		27420	20407	15754	15755	33992	33992					0.15433199212816362
LSYIKKGMIKL	11	Unmodified	_LSYIKKGMIKL_					0	0	0			REV__ENST00000371833.3_1_1:49224889-49227061:-|nuORF	REV__ENST00000371833.3_1_1:49224889-49227061:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	431.936948	1292.78901	-0.13322	-5.7541E-05	2.8938	0.00125	2.7606	0.0011924	431.9381204210053	25.001	0.24704	25.001	24.872	25.12	0	-0.018716	0.00016354	NaN	0.45452	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30600	+		27421	20407	15754	15755							0.15433199212816362
LSYIPVQSPDK	11	Unmodified	_LSYIPVQSPDK_					0	0	0			REV__HELZ2|p.D1355Vfs*86|1|0.31|ENSG00000130589|chr20:63564758-63564758|T/-|frameshift_variant	REV__HELZ2|p.D1355Vfs*86|1|0.31|ENSG00000130589|chr20:63564758-63564758|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.9143981933594	3	416.227444	1245.6605	-0.13661	-5.686E-05	0.13243	5.5119E-05	-0.0041839	-1.7415E-06	416.22747922664155	16.542	0.48206	16.542	16.267	16.749	0					38	16	3	0	0	0	0.33263	1	1308	1308		3.8459	2.3908	1	223840	+		27422	15466	15755	15756	33993	33993					0.04749935503446068
LSYKEHMIL	9	Unmodified	_LSYKEHMIL_					0	0	0		ENSG00000138780|ENST00000515279|GSTCD;nc|ENSG00000138780|Q8NEC7-3|GSTCD	ENSG00000138780|ENST00000515279|GSTCD	ENSG00000138780|ENST00000515279|GSTCD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2796020507812	2	567.30481	1132.59507	0.32905	0.00018667	-2.6953	-0.001529	-2.3662	-0.0013424	567.3036368182335	52.895	0.27345	52.895	52.686	52.96	0					12	9	2	0	0	0	0.23749	1	12457	12457		15.248	10.018	1	182380			27423	4196	15756	15757	33994	33994					0.03407242776734165
LSYLDATLL	9	Unmodified	_LSYLDATLL_					0	0	0			REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7497253417969	2	504.784233	1007.55391	0.41965	0.00021183	-0.70796	-0.00035737	-0.28831	-0.00014553	504.78384886551373	75.642	0.64483	75.61	75.184	75.829	-0.031487					27	23	2	0	0	0	0.21389	1	19472	19472		25.399	0	1	126340	+		27424	18645	15757	15758	33995	33995					0.050438050089155695
LSYLRITK	8	Unmodified	_LSYLRITK_					0	0	0			REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1	REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2716369628906	2	497.30821	992.601866	0.053605	2.6658E-05	-0.25648	-0.00012755	-0.20288	-0.00010089	497.3082087575504	15.058	0.39584	14.993	14.82	15.216	-0.064413					16	13	2	0	0	0	0.34353	1	859	859		4.756	0	1	58767	+		27425	18623	15758	15759	33996	33996					0.10526923719612569
LSYLSEDGCK	10	Unmodified	_LSYLSEDGCK_					0	0	0		nc|ENSG00000104611|Q9H788-2|SH2D4A;ENSG00000104611|ENST00000265807|SH2D4A	nc|ENSG00000104611|Q9H788-2|SH2D4A	nc|ENSG00000104611|Q9H788-2|SH2D4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8111572265625	2	557.757889	1113.50123	0.45665	0.0002547	1.7777	0.00099151	2.2343	0.0012462	557.7585526639306	82.677	0.58663	82.677	82.287	82.874	0					22	14	2	0	0	0	0.28108	1	21566	21566		28.495	5.3461	1	138320			27426	1900	15759	15760	33997	33997					-0.050985211162242194
LSYLYLTGVYL	11	Unmodified	_LSYLYLTGVYL_					0	0	0		ENST00000460734.5_1_21:46553558-46554689:+|nuORF	ENST00000460734.5_1_21:46553558-46554689:+|nuORF	ENST00000460734.5_1_21:46553558-46554689:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.5760498046875	3	435.576073	1303.70639	-0.06426	-2.799E-05	0.20473	8.9174E-05	0.14047	6.1183E-05	435.5761162633865	38.056	0.91613	38.056	37.795	38.711	0					72	32	3	0	0	0	0.42863	1	7898	7898		7.4771	1.2427	1	1012800			27427	10736	15760	15761	33998	33998					0.06668580685663983
LSYNKINQL	9	Unmodified	_LSYNKINQL_					0	0	0		nc|ENSG00000128606|Q8N6Y2-2|LRRC17;ENSG00000128606|ENST00000339431|LRRC17	nc|ENSG00000128606|Q8N6Y2-2|LRRC17	nc|ENSG00000128606|Q8N6Y2-2|LRRC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8245239257812	2	546.806031	1091.59751	0.40689	0.00022249	0.43161	0.00023601	0.8385	0.0004585	546.8060510004317	51.868	0.59085	51.868	51.648	52.239	0					36	21	3	0	0	0	0.088391	1	12192	12192		39.957	10.876	1	371270			27428	3380	15761	15762	33999	33999					0.05537414506034111
LSYNKINQL	9	Unmodified	_LSYNKINQL_					0	0	0		nc|ENSG00000128606|Q8N6Y2-2|LRRC17;ENSG00000128606|ENST00000339431|LRRC17	nc|ENSG00000128606|Q8N6Y2-2|LRRC17	nc|ENSG00000128606|Q8N6Y2-2|LRRC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8246459960938	2	546.806031	1091.59751	0.33512	0.00018324	-0.268	-0.00014654	0.06712	3.6701E-05	546.8059315257486	51.979	0.45304	51.978	51.793	52.246	-0.00080872					38	16	3	0	0	0	0.22188	1	12242	12242		20.454	3.3407	1	384510			27429	3380	15761	15762	34000	34000					0.05537414506034111
LSYNKINQL	9	Unmodified	_LSYNKINQL_					0	0	0		nc|ENSG00000128606|Q8N6Y2-2|LRRC17;ENSG00000128606|ENST00000339431|LRRC17	nc|ENSG00000128606|Q8N6Y2-2|LRRC17	nc|ENSG00000128606|Q8N6Y2-2|LRRC17	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	546.806031	1091.59751	0.33512	0.00018324	-0.268	-0.00014654	0.06712	3.6701E-05	546.8059315257486	51.979	0.45304	51.978	51.793	52.246	-0.00080872	0.052392	-0.00031356	NaN	39.957	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384510			27430	3380	15761	15762							0.05537414506034111
LSYNKLSDSVF	11	Unmodified	_LSYNKLSDSVF_					0	0	0		ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.8872985839844	3	424.887199	1271.63977	-0.046473	-1.9746E-05	-0.19645	-8.3471E-05	-0.24293	-0.00010322	424.887375588714	29.782	1.6856	29.794	28.769	30.454	0.012266					244	58	7	0	0	0	0.29518	1	5346	5346		14.171	0	1	1429600			27431	6772	15762	15763	34001	34001					0.014813451237614572
LSYNKNKNN	9	Unmodified	_LSYNKNKNN_					0	0	0		ENST00000297261.6_1_7:155595400-155595496:-|nuORF	ENST00000297261.6_1_7:155595400-155595496:-|nuORF	ENST00000297261.6_1_7:155595400-155595496:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7979736328125	2	547.783087	1093.55162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.623	1	56.702	56.202	57.202	0.078674								0	0	0	0.19534	1	13605	13605		24.021	2.2739	1				27432	9197	15763	15764	34002	34002					0.008587693238041538
LSYNLALAY	9	Unmodified	_LSYNLALAY_					0	0	0		ENSG00000197557|ENST00000355689|TTC30A;ENSG00000196659|ENST00000408939|TTC30B	ENSG00000197557|ENST00000355689|TTC30A	ENSG00000197557|ENST00000355689|TTC30A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2584838867188	2	514.276575	1026.5386	0.28594	0.00014705	0.58172	0.00029916	0.86766	0.00044622	514.2767220296862	68.672	1.0697	68.744	68.484	69.554	0.071938					76	38	3	0	0	0	0.25314	1	17490	17490		15.847	0	1	688610			27433	7975	15764	15765	34003	34003					0.026389382116803972
LSYPNYYTLMT	11	Unmodified	_LSYPNYYTLMT_					0	0	0		ENSG00000164303|ENST00000296741|ENPP6	ENSG00000164303|ENST00000296741|ENPP6	ENSG00000164303|ENST00000296741|ENPP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2187805175781	3	455.88469	1364.63224	0.46142	0.00021036	-0.98259	-0.00044795	-0.52117	-0.00023759	455.8842970287953	20.284	0.71153	20.231	19.956	20.667	-0.05291					61	25	3	0	0	0	0.46842	1	2537	2537		2.2527	0.79761	1	395610			27434	5823	15765	15766	34004	34004					-0.03549130468172734
LSYPSITINVL	11	Unmodified	_LSYPSITINVL_					0	0	0		nc|ENSG00000104055|O43548-2|TGM5;ENSG00000104055|ENST00000220420|TGM5	nc|ENSG00000104055|O43548-2|TGM5	nc|ENSG00000104055|O43548-2|TGM5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5643005371094	3	407.23594	1218.68599	0.010439	4.2511E-06	0.47467	0.0001933	0.48511	0.00019756	407.2360827075976	31.708	0.39772	31.75	31.624	32.022	0.042364					17	13	2	0	0	0	0.33064	1	6006	6006		5.0475	0.85802	1	369190			27435	1864	15766	15767	34005	34005					0.08539410025855432
LSYQDAAFT	9	Unmodified	_LSYQDAAFT_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000520836.5_1_5:169174421-169268422:+|nuORF;nc|ENSG00000134516|Q92608-2|DOCK2	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7762451171875	2	508.24019	1014.46583	0.70381	0.0003577	-0.22601	-0.00011487	0.47779	0.00024283	508.7416378891663	54.893	0.59508	54.893	54.651	55.246	0					35	21	2	0	0	0	0.14961	1	13062	13062		27.629	0	1	686710			27436	3792	15767	15768	34006	34006					-0.0408281558170529
LSYQDAAFT	9	Unmodified	_LSYQDAAFT_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000520836.5_1_5:169174421-169268422:+|nuORF;nc|ENSG00000134516|Q92608-2|DOCK2	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7767028808594	2	508.24019	1014.46583	0.62133	0.00031578	-0.11535	-5.8626E-05	0.50597	0.00025716	508.2402066785323	54.983	0.55802	54.967	54.765	55.323	-0.015923					35	20	2	0	0	0	0.18936	1	13117	13117		20.415	0	1	775280			27437	3792	15767	15768	34007	34007					-0.0408281558170529
LSYQNLLNV	9	Unmodified	_LSYQNLLNV_					0	0	0		ENSG00000167117|ENST00000450727|ANKRD40CL	ENSG00000167117|ENST00000450727|ANKRD40CL	ENSG00000167117|ENST00000450727|ANKRD40CL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3004150390625	2	532.292756	1062.57096	0.62052	0.0003303	3.4548	0.001839	4.0753	0.0021693	532.2924414505704	56.919	1.364	56.919	56.241	57.605	0					155	50	6	0	0	0	0.19747	1	13656	13656		24.021	0.23079	1	3688600			27438	6151	15768	15769	34008	34008					0.04217725614716983
LSYQRIKL	8	Unmodified	_LSYQRIKL_					0	0	0		ENST00000534408.5_1_11:77690058-77690109:-|nuORF	ENST00000534408.5_1_11:77690058-77690109:-|nuORF	ENST00000534408.5_1_11:77690058-77690109:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.7735595703125	2	510.813659	1019.61277	0.30188	0.0001542	-0.28952	-0.00014789	0.012357	6.3121E-06	510.81379806022267	43.371	0.67829	43.371	43.034	43.713	0					53	24	3	0	0	0	0.30795	1	9487	9487		24.021	0	1	382070			27439	11658	15769	15770	34009	34009					0.10374326093892705
LSYQRIKL	8	Unmodified	_LSYQRIKL_					0	0	0		ENST00000534408.5_1_11:77690058-77690109:-|nuORF	ENST00000534408.5_1_11:77690058-77690109:-|nuORF	ENST00000534408.5_1_11:77690058-77690109:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2781982421875	2	510.813659	1019.61277	0.33517	0.00017121	0.020074	1.0254E-05	0.35524	0.00018146	510.8137964923253	43.018	0.76894	43.103	42.806	43.575	0.085197					45	27	3	0	0	0	0.32886	1	9439	9439		15.847	3.3156	1	446700			27440	11658	15769	15770	34010	34010					0.10374326093892705
LSYQSAWLT	9	Unmodified	_LSYQSAWLT_					0	0	0		ENSG00000160867|ENST00000292408|FGFR4;nc|ENSG00000160867|P22455-2|FGFR4;ENST00000508139.1_1_5:176518793-176520368:+|nuORF	ENSG00000160867|ENST00000292408|FGFR4	ENSG00000160867|ENST00000292408|FGFR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.3057861328125	2	534.771657	1067.52876	0.4403	0.00023546	3.395	0.0018155	3.8353	0.002051	535.2751761431103	39.577	0.52508	39.677	39.452	39.977	0.099407					33	18	3	0	0	0	0.2322	1	8352	8352		10.074	0	1	309220			27441	5494	15770	15771	34011	34011					-0.0023024979368528875
LSYRLCLF	8	Unmodified	_LSYRLCLF_					0	0	0			REV__ENST00000555139.1_1_14:74961475-74961700:+|nuORF	REV__ENST00000555139.1_1_14:74961475-74961700:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.312744140625	2	507.775688	1013.53682	0.47268	0.00024002	-0.39266	-0.00019939	0.080019	4.0632E-05	507.77597307146465	87.941	1.5877	87.941	87.147	88.735	0					189	78	4	0	0	0	0.33995	1	22981	22981		15.768	5.5848	1	1811400	+		27442	22244	15771	15772	34012	34012					0.030596059221011274
LSYRLCLF	8	Unmodified	_LSYRLCLF_					0	0	0			REV__ENST00000555139.1_1_14:74961475-74961700:+|nuORF	REV__ENST00000555139.1_1_14:74961475-74961700:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	507.775688	1013.53682	0.35613	0.00018084	-0.57549	-0.00029222	-0.21936	-0.00011138	507.77602093334303	87.821	3.9517	87.911	85.19	89.142	0.089195	-0.015412	-9.8286E-05	NaN	15.768	275	172	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1250200	+		27443	22244	15771	15772							0.030596059221011274
LSYSADDKNLT	11	Unmodified	_LSYSADDKNLT_					0	0	0			REV__nc|ENSG00000138686|Q8IWZ6-2|BBS7	REV__nc|ENSG00000138686|Q8IWZ6-2|BBS7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.893798828125	3	409.534825	1225.58265	-0.094196	-3.8577E-05	0.08624	3.5318E-05	-0.007956	-3.2583E-06	409.5352632094725	15.981	0.2452	15.918	15.73	15.975	-0.062534					12	8	2	0	0	0	0.33282	1	1168	1168		1.0136	0.38675	1	13405	+		27444	15946	15772	15773	34013	34013					-0.02112122152630036
LSYSFFFPF	9	Unmodified	_LSYSFFFPF_					0	0	0			REV__ENSG00000274286|ENST00000620793|ADRA2B	REV__ENSG00000274286|ENST00000620793|ADRA2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.7909545898438	2	577.781493	1153.54843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.303	1	59.289	58.789	59.789	-0.014267								0	0	0	0.23367	1	14425	14425		11.64	0.14559	1		+		27445	18304	15773	15774	34014	34014					-0.02219873782905779
LSYTAEPPL	9	Unmodified	_LSYTAEPPL_					0	0	0			REV__ENSG00000129968|ENST00000292577|ABHD17A	REV__ENSG00000129968|ENST00000292577|ABHD17A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3040771484375	2	495.760758	989.506963	0.36675	0.00018182	0.48753	0.0002417	0.85428	0.00042352	495.7608355059277	74.312	0.55663	74.365	74.146	74.703	0.052361					28	18	2	0	0	0	0.1524	1	19047	19047		39.957	0	1	346190	+		27446	15435	15774	15775	34015	34015					0.011789454577638026
LSYVDDVRK	9	Unmodified	_LSYVDDVRK_					0	0	0		ANO5|p.K91R|1|0.28|ENSG00000171714|chr11:22221188-22221188|A/G|missense_variant	ANO5|p.K91R|1|0.28|ENSG00000171714|chr11:22221188-22221188|A/G|missense_variant	ANO5|p.K91R|1|0.28|ENSG00000171714|chr11:22221188-22221188|A/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2968139648438	2	547.795663	1093.57677	0.14946	8.1871E-05	-0.49445	-0.00027086	-0.34499	-0.00018898	547.7959421309686	15.245	0.86633	15.245	14.949	15.816	0					65	29	3	0	0	0	0.34809	1	1022	1022		1.6526	0.85899	1	127200			27447	47	15775	15776	34016	34016					0.03372824126381602
LSYVRIVQ	8	Unmodified	_LSYVRIVQ_					0	0	0			REV__nc|ENSG00000100353|O15371-3|EIF3D	REV__nc|ENSG00000100353|O15371-3|EIF3D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.80853271484375	2	489.292559	976.570566	0.15255	7.4644E-05	1.4477	0.00070837	1.6003	0.00078302	489.2930478605337	33.16	0.41008	33.16	32.955	33.365	0					22	14	2	0	0	0	0.39956	1	6423	6423		19.439	2.4967	1	146530	+		27448	14187	15776	15777	34017	34017					0.08134350685531899
LSYYDEEIE	9	Unmodified	_LSYYDEEIE_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3111572265625	2	580.753327	1159.4921	0.47223	0.00027425	0.22193	0.00012889	0.69416	0.00040314	580.7534937298811	63.721	0.40326	63.713	63.478	63.882	-0.0085564					22	13	2	0	0	0	0.24311	1	15835	15835		16.942	1.0951	1	131070	+		27449	16816	15777	15778	34018	34018					-0.08126591200903022
LSYYLHVIF	9	Unmodified	_LSYYLHVIF_					0	0	0			REV__nc|ENSG00000120539|Q96GX5-2|MASTL	REV__nc|ENSG00000120539|Q96GX5-2|MASTL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3346557617188	2	577.815867	1153.61718	0.32379	0.00018709	-2.7552	-0.001592	-2.4314	-0.0014049	577.814048423569	70.188	0.58598	70.254	69.993	70.579	0.06604					34	20	2	0	0	0	0.25066	1	17740	17740		11.64	0	1	214330	+		27450	15086	15778	15779	34019	34019					0.0465179051677751
LSYYSLEKVA	10	Unmodified	_LSYYSLEKVA_					0	0	0			REV__ENSG00000106804|ENST00000223642|C5	REV__ENSG00000106804|ENST00000223642|C5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8135375976562	2	586.813522	1171.61249	0.47095	0.00027636	-0.41837	-0.00024551	0.052577	3.0853E-05	586.813305875984	21.467	0.91954	21.367	20.763	21.682	-0.10034					80	32	4	0	0	0	0.38773	1	2853	2853		5.7319	5.7319	1	364940	+		27451	14536	15779	15780	34020	34020					0.03354861583375168
LTAAGFIHL	9	Unmodified	_LTAAGFIHL_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.7903137207031	2	471.774003	941.533452	0.19412	9.1582E-05	0.49856	0.00023521	0.69268	0.00032679	471.77409522533486	44.02	0.45361	44.104	43.944	44.398	0.083992					24	16	2	0	0	0	0.155	1	9673	9673		30.225	3.8835	1	592850			27452	5220	15780	15781	34021	34021					0.06034679139747823
LTAATLPKVK	10	Unmodified	_LTAATLPKVK_					0	0	0		ENST00000595443.5_1_19:39327988-39329682:-|nuORF	ENST00000595443.5_1_19:39327988-39329682:-|nuORF	ENST00000595443.5_1_19:39327988-39329682:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.3370361328125	2	521.336967	1040.65938	0.41965	0.00021878	-1.0451	-0.00054484	-0.62542	-0.00032606	521.3367957114671	42.911	0.62526	42.996	42.755	43.381	0.085197					63	22	4	0	0	0	0.02128	2	9371	9371;9433		70.332	6.3715	1	842580			27453	12222	15781	15782	34022;34023	34022					0.14067765925165077
LTAATLPKVK	10	Unmodified	_LTAATLPKVK_					0	0	0		ENST00000595443.5_1_19:39327988-39329682:-|nuORF	ENST00000595443.5_1_19:39327988-39329682:-|nuORF	ENST00000595443.5_1_19:39327988-39329682:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.337158203125	2	521.336967	1040.65938	0.19431	0.0001013	-0.89067	-0.00046434	-0.69636	-0.00036304	521.3369258935951	42.858	0.67371	42.95	42.717	43.391	0.091362					59	24	3	0	0	0	0.0053869	2	9348	9348;9416		89.401	10.673	1	754880			27454	12222	15781	15782	34024;34025	34024					0.14067765925165077
LTAATLPKVK	10	Unmodified	_LTAATLPKVK_					0	0	0		ENST00000595443.5_1_19:39327988-39329682:-|nuORF	ENST00000595443.5_1_19:39327988-39329682:-|nuORF	ENST00000595443.5_1_19:39327988-39329682:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.336967	1040.65938	0.43173	0.00022508	-0.80819	-0.00042134	-0.37646	-0.00019626	521.3368905838558	43.004	0.68052	43.004	42.786	43.467	0	0.020963	0.0001244	NaN	89.401	61	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	827120			27455	12222	15781	15782							0.14067765925165077
LTAEARELK	9	Unmodified	_LTAEARELK_					0	0	0		ENST00000484252.5_1_2:128398362-128399806:-|nuORF;nc|ENSG00000072163|Q7Z4I7-4|LIMS2;LIMS2|p.K226Rfs*36|1|0.29|ENSG00000072163|chr2:127640966-127640972|TCACACT/-|frameshift_variant;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-3|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2	ENST00000484252.5_1_2:128398362-128399806:-|nuORF	ENST00000484252.5_1_2:128398362-128399806:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.823974609375	2	515.798206	1029.58186	0.43074	0.00022217	-0.27041	-0.00013948	0.16033	8.2696E-05	515.7980725931232	44.584	0.51442	44.652	44.437	44.952	0.068573					40	18	3	0	0	0	0.1939	1	9879	9879		30.637	0	1	577870			27456	974	15782	15783	34026	34026					0.06825127988986424
LTAEASECNL	10	Unmodified	_LTAEASECNL_					0	0	0		ENST00000487117.1_1_1:21106934-21106994:-|nuORF	ENST00000487117.1_1_1:21106934-21106994:-|nuORF	ENST00000487117.1_1_1:21106934-21106994:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2848510742188	2	525.742239	1049.46993	0.56349	0.00029625	-1.7242	-0.00090648	-1.1607	-0.00061023	526.2423122061449	63.304	0.54258	63.304	63.093	63.635	0					25	19	2	0	0	0	0.31267	1	15655	15655		10.074	0	1	228450			27457	11114	15783	15784	34027	34027					-0.05283094150308898
LTAEDITRM	9	Unmodified	_LTAEDITRM_					0	0	0		ENSG00000179674|ENST00000320767|ARL14	ENSG00000179674|ENST00000320767|ARL14	ENSG00000179674|ENST00000320767|ARL14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7952880859375	2	525.268424	1048.5223	0.62263	0.00032705	-1.7366	-0.00091219	-1.114	-0.00058514	525.2680662292252	67.666	0.53833	67.744	67.461	68	0.078049					29	18	3	0	0	0	0.2322	1	16933	16933		20.454	2.3073	1	118750			27458	7137	15784	15785	34028	34028					-2.5110166916419985E-05
LTAEREAGFG	10	Unmodified	_LTAEREAGFG_					0	0	0			REV__ENST00000489991.1_1_3:132349350-132378619:-|nuORF	REV__ENST00000489991.1_1_3:132349350-132378619:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2848510742188	2	525.764363	1049.51417	0.53822	0.00028298	-0.02898	-1.5237E-05	0.50924	0.00026774	525.7645719144648	63.24	0.51808	63.24	62.984	63.502	0					43	18	4	0	0	0	0.31267	1	15655	15655		10.074	0	1	439480	+		27459	19169	15785	15786	34029	34029					-0.008603219418091612
LTAGRPQRLH	10	Unmodified	_LTAGRPQRLH_					0	0	0			REV__ENST00000357503.2_1_9:140172209-140173569:+|nuORF	REV__ENST00000357503.2_1_9:140172209-140173569:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.277587890625	2	574.835988	1147.65742	0.36909	0.00021217	-0.46061	-0.00026477	-0.091516	-5.2607E-05	574.8352267870507	90.449	0.58435	90.449	90.105	90.689	0.0003891					57	40	2	0	0	0	0.32033	1	23869	23869		3.5965	3.5965	1	136270	+		27460	20217	15786	15787	34030	34030					0.08950149959923692
LTAGVSVLEV	10	Unmodified	_LTAGVSVLEV_					0	0	0		ENST00000422823.1_1_7:64196548-64197094:-|nuORF	ENST00000422823.1_1_7:64196548-64197094:-|nuORF	ENST00000422823.1_1_7:64196548-64197094:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7346496582031	2	494.289682	986.564812	0.4721	0.00023335	-1.0443	-0.0005162	-0.57223	-0.00028285	494.28898582148616	72.64	0.52591	72.694	72.484	73.01	0.053833					31	18	2	0	0	0	0.23542	1	18545	18545		32.786	0	1	164970			27461	10382	15787	15788	34031	34031					0.07099207383191697
LTAHLPVLLY	10	Unmodified	_LTAHLPVLLY_					0	0	0		ENST00000468865.6_1_1:43829752-43830910:-|nuORF	ENST00000468865.6_1_1:43829752-43830910:-|nuORF	ENST00000468865.6_1_1:43829752-43830910:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3316650390625	2	570.344792	1138.67503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.105	1	75.157	74.657	75.657	0.052361								0	0	0	0.35948	1	19272	19272		10.824	1.4408	1				27462	10844	15788	15789	34032	34032					0.11124052442232824
LTAIKKAVVK	10	Unmodified	_LTAIKKAVVK_					0	0	0			REV__ENST00000453177.2_1_9:22747885-22748107:+|nuORF	REV__ENST00000453177.2_1_9:22747885-22748107:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2988891601562	2	535.868434	1069.72232	0.39588	0.00021214	-0.11047	-5.9195E-05	0.28542	0.00015295	535.8684199954783	27.196	0.19574	27.185	27.07	27.266	-0.011562					9	6	2	0	0	0	0.31926	1	4553	4553		2.9952	1.151	1	47320	+		27463	21137	15789	15790	34033	34033					0.1902433171321718
LTAIKKAVVK	10	Unmodified	_LTAIKKAVVK_					0	0	0			REV__ENST00000453177.2_1_9:22747885-22748107:+|nuORF	REV__ENST00000453177.2_1_9:22747885-22748107:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	535.868434	1069.72232	0.3826	0.00020502	-0.28156	-0.00015088	0.10104	5.4147E-05	535.8682102022998	27.189	0.28694	27.189	27.007	27.294	0	0.0030336	-0.0001918	NaN	2.9952	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38944	+		27464	21137	15789	15790							0.1902433171321718
LTAIKKAVVK	10	Unmodified	_LTAIKKAVVK_					0	0	0			REV__ENST00000453177.2_1_9:22747885-22748107:+|nuORF	REV__ENST00000453177.2_1_9:22747885-22748107:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	535.868434	1069.72232	0.18259	9.7843E-05	0.048498	2.5989E-05	0.23109	0.00012383	535.8684502285554	27.207	0.22534	27.185	27.041	27.266	-0.021412	-0.00117	0.00016193	NaN	2.9952	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50190	+		27465	21137	15789	15790							0.1902433171321718
LTAKYQPK	8	Unmodified	_LTAKYQPK_					0	0	0		ENSG00000171320|ENST00000305188|ESCO2;ENST00000524293.1_1_8:27633031-27634707:+|nuORF	ENSG00000171320|ENST00000305188|ESCO2	ENSG00000171320|ENST00000305188|ESCO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.2713623046875	2	474.779285	947.544017	0.16342	7.759E-05	0.16237	7.7091E-05	0.32579	0.00015468	474.77938420368935	48.87	0.99709	48.902	48.471	49.468	0.032043					57	35	2	0	0	0	0.31088	1	11356	11356		15.847	0	1	933450			27466	6537	15790	15791	34034	34034					0.06814661794180665
LTALVPPSQW	10	Unmodified	_LTALVPPSQW_					0	0	0			REV__ENST00000528393.1_1_11:79699092-79699545:+|nuORF	REV__ENST00000528393.1_1_11:79699092-79699545:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2694091796875	2	556.310949	1110.60735	0.71048	0.00039525	-1.2393	-0.00068941	-0.52878	-0.00029417	556.3105427995692	48.305	0.36765	48.352	48.132	48.5	0.04752					19	13	2	0	0	0	0.29038	1	10977	10977		24.021	3.606	1	361100	+		27467	21988	15791	15792	34035	34035					0.0564660251143323
LTAMICLC	8	Unmodified	_LTAMICLC_					0	0	0		ENST00000440896.2_1_11:59856214-59861079:+|nuORF;ENSG00000149534|ENST00000278888|MS4A2	ENST00000440896.2_1_11:59856214-59861079:+|nuORF	ENST00000440896.2_1_11:59856214-59861079:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.2104187011719	2	434.210478	866.406402	-0.0112	-4.8632E-06	-0.33874	-0.00014708	-0.34994	-0.00015195	434.2102078485851	72.387	1.116	72.387	72.017	73.133	0					76	40	3	0	0	0	0.4397	1	18513	18513		9.3474	0	1	1161000			27468	4874	15792	15793	34036	34036					-0.03214449392771712
LTAMICLC	8	Unmodified	_LTAMICLC_					0	0	0		ENST00000440896.2_1_11:59856214-59861079:+|nuORF;ENSG00000149534|ENST00000278888|MS4A2	ENST00000440896.2_1_11:59856214-59861079:+|nuORF	ENST00000440896.2_1_11:59856214-59861079:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.210205078125	2	434.210478	866.406402	0.035978	1.5622E-05	-0.34849	-0.00015132	-0.31251	-0.0001357	434.2102137338502	72.414	0.91911	72.386	72.092	73.011	-0.027275					72	32	3	0	0	0	0.4397	1	18414	18414		9.3474	0	1	1047000			27469	4874	15792	15793	34037	34037					-0.03214449392771712
LTAQAWEL	8	Unmodified	_LTAQAWEL_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.765380859375	2	466.247818	930.481082	-0.024045	-1.1211E-05	0.32318	0.00015068	0.29913	0.00013947	466.2479235711483	51.838	0.59085	51.838	51.648	52.239	0					39	21	3	0	0	0	0.34039	1	12235	12235		10.824	0	1	398670			27470	5589	15793	15794	34038	34038					0.013060960061352489
LTAQAWEL	8	Unmodified	_LTAQAWEL_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7652893066406	2	466.247818	930.481082	0.057282	2.6708E-05	-0.093072	-4.3395E-05	-0.03579	-1.6687E-05	466.2477814914672	51.814	0.63295	51.861	51.673	52.306	0.047134					39	22	2	0	0	0	0.37937	1	12208	12208		21.747	0	1	527150			27471	5589	15793	15794	34039	34039					0.013060960061352489
LTAQAWEL	8	Unmodified	_LTAQAWEL_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	466.247818	930.481082	0.0027386	1.2769E-06	0.30477	0.0001421	0.30751	0.00014338	466.24790214781143	51.937	0.50818	51.936	51.71	52.218	-0.00081253	0.057762	8.8446E-05	NaN	10.824	35	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	498400			27472	5589	15793	15794							0.013060960061352489
LTARDLVLF	9	Unmodified	_LTARDLVLF_					0	0	0			REV__ENST00000358290.8_1_4:88312286-88312331:-|nuORF	REV__ENST00000358290.8_1_4:88312286-88312331:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8055419921875	2	524.313492	1046.61243	0.71615	0.00037549	-0.14758	-7.7377E-05	0.56857	0.00029811	524.3131518537438	64.183	0.84193	64.174	63.881	64.723	-0.0095291					60	30	3	0	0	0	0.23783	1	15856	15856		18.135	0	1	798160	+		27473	20230	15794	15795	34040	34040					0.09098906374015314
LTARLGRL	8	Unmodified	_LTARLGRL_					0	0	0			REV__ENSG00000236287|ENST00000413761|ZBED5	REV__ENSG00000236287|ENST00000413761|ZBED5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.5703125	2	450.292894	898.571235	-0.011218	-5.0514E-06	0.14285	6.4325E-05	0.13163	5.9274E-05	450.292912433567	31.469	0.38109	31.469	31.202	31.583	0					22	13	2	0	0	0	0.34167	1	5857	5857		11.64	0	1	174800	+		27474	19149	15795	15796	34041	34041					0.11789190125227833
LTASLEDR	8	Unmodified	_LTASLEDR_					0	0	0		ENST00000504648.5_1_1:205500608-205500740:+|nuORF	ENST00000504648.5_1_1:205500608-205500740:+|nuORF	ENST00000504648.5_1_1:205500608-205500740:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.7480773925781	2	452.740357	903.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.593	1	16.479	15.979	16.979	-0.11434								0	0	0	0.36336	1	1376	1376		8.5933	0	1				27475	11302	15796	15797	34042	34042					0.010566041381366631
LTCLLLSELK	10	Unmodified	_LTCLLLSELK_					0	0	0			REV__nc|ENSG00000145715|P20936-2|RASA1	REV__nc|ENSG00000145715|P20936-2|RASA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2794799804688	2	566.835942	1131.65733	0.17665	0.00010013	0.47479	0.00026913	0.65144	0.00036926	567.3374754467981	65.456	0.39182	65.456	65.242	65.634	0					17	13	2	0	0	0	0.3144	1	16298	16298		5.2969	0.39987	1	228930	+		27476	16300	15797	15798	34043	34043					0.09676969125052892
LTCTSYVLI	9	Unmodified	_LTCTSYVLI_					0	0	0			REV__ENSG00000178694|ENST00000314622|NSUN3	REV__ENSG00000178694|ENST00000314622|NSUN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7730712890625	2	506.772811	1011.53107	0.3895	0.00019739	0.20175	0.00010224	0.59125	0.00029963	506.7728990286422	82.127	0.83688	82.127	81.919	82.756	0					69	30	3	0	0	0	0.24581	1	21521	21521		16.942	0	1	1866700	+		27477	18044	15798	15799	34044	34044					0.025764626197769758
LTDFKWEERE	10	Unmodified	_LTDFKWEERE_					0	0	0			REV__ENSG00000141543|ENST00000649764|EIF4A3	REV__ENSG00000141543|ENST00000649764|EIF4A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.55419921875	3	451.55422	1351.64083	0.15378	6.9442E-05	-0.091872	-4.1485E-05	0.061913	2.7957E-05	451.55412230475577	39.555	0.69999	39.648	39.39	40.09	0.092674					75	24	4	0	0	0	0.34155	1	8386	8386		14.218	0.69951	1	1373500	+		27478	16082	15799	15800	34045	34045					-0.02092440507340143
LTDGRSPRRSR	11	Unmodified	_LTDGRSPRRSR_					0	0	0		nc|ENSG00000187583|Q494U1-3|PLEKHN1;ENSG00000187583|ENST00000379410|PLEKHN1;nc|ENSG00000187583|Q494U1-2|PLEKHN1	nc|ENSG00000187583|Q494U1-3|PLEKHN1	nc|ENSG00000187583|Q494U1-3|PLEKHN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.55902099609375	3	434.244603	1299.71198	-0.2029	-8.8108E-05	1.0075	0.00043752	0.80464	0.00034941	434.24501721229194	16.091	0.54788	16.028	15.866	16.414	-0.062534					32	18	3	0	0	0	0.3331	1	1334	1334		2.2527	0.51045	1	67603			27479	7693	15800	15801	34046	34046					0.07411117040692261
LTDKIDVLLQQ	11	Unmodified	_LTDKIDVLLQQ_					0	0	0		ENST00000508482.5_1_17:48797176-48828101:+|nuORF;ENSG00000108848|ENST00000505658|LUC7L3	ENST00000508482.5_1_17:48797176-48828101:+|nuORF	ENST00000508482.5_1_17:48797176-48828101:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.92578125	3	429.250249	1284.72892	-0.10015	-4.2987E-05	-0.32876	-0.00014112	-0.42891	-0.00018411	429.25026708050274	24.764	0.41299	24.764	24.517	24.93	0					20	13	2	0	0	0	0.33146	1	3807	3807		2.2527	0.92309	1	65986			27480	2222	15801	15802	34047	34047					0.0979418008328139
LTDKLEERTKF	11	Unmodified	_LTDKLEERTKF_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.2479248046875	3	460.589153	1378.74563	0.14421	6.6421E-05	2.0074	0.00092459	2.1516	0.00099101	460.5901730346057	63.038	0.61864	63.134	62.663	63.282	0.095726					31	22	2	0	0	0	0.33146	1	15599	15599		4.1166	0	1	163070	+		27481	15914	15802	15803	34048	34048					0.07140680969223467
LTDKLRPN	8	Unmodified	_LTDKLRPN_					0	0	0			REV__nc|ENSG00000167969|P42126-2|ECI1	REV__nc|ENSG00000167969|P42126-2|ECI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7800598144531	2	478.779816	955.545079	-0.081482	-3.9012E-05	0.33981	0.0001627	0.25833	0.00012368	478.78022470364414	15.489	0.44708	15.489	15.232	15.679	0					32	14	3	0	0	0	0.45431	1	1055	1055		4.3292	0	1	44308	+		27482	23076	15803	15804	34049	34049					0.0655287616308442
LTDKLRPN	8	Unmodified	_LTDKLRPN_					0	0	0			REV__nc|ENSG00000167969|P42126-2|ECI1	REV__nc|ENSG00000167969|P42126-2|ECI1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	478.779816	955.545079	-0.081482	-3.9012E-05	0.33981	0.0001627	0.25833	0.00012368	478.78022470364414	15.489	0.44708	15.489	15.232	15.679	0	-0.0058319	0.00028961	NaN	4.3292	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44308	+		27483	23076	15803	15804							0.0655287616308442
LTDKLRPN	8	Unmodified	_LTDKLRPN_					0	0	0			REV__nc|ENSG00000167969|P42126-2|ECI1	REV__nc|ENSG00000167969|P42126-2|ECI1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	478.779816	955.545079	0.036795	1.7617E-05	-0.29903	-0.00014317	-0.26224	-0.00012555	478.7800058294871	15.593	0.49244	15.483	15.204	15.696	-0.10982	-0.011226	-0.00032213	NaN	4.3292	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44811	+		27484	23076	15803	15804							0.0655287616308442
LTDKLRPN	8	Unmodified	_LTDKLRPN_					0	0	0			REV__nc|ENSG00000167969|P42126-2|ECI1	REV__nc|ENSG00000167969|P42126-2|ECI1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	478.779816	955.545079	0.00050763	2.4304E-07	0.015384	7.3656E-06	0.015892	7.6086E-06	478.78026521111684	15.576	0.42099	15.511	15.247	15.668	-0.064413	0.017058	-2.1054E-05	NaN	4.3292	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42642	+		27485	23076	15803	15804							0.0655287616308442
LTDLSDILTL	10	Unmodified	_LTDLSDILTL_					0	0	0			REV__ENSG00000116406|ENST00000318130|EDEM3	REV__ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.3121948242188	2	552.313354	1102.61216	0.35136	0.00019406	-1.8195	-0.001005	-1.4682	-0.0008109	552.3123616062553	26.24	0.39666	26.218	26.013	26.409	-0.022238					21	13	2	0	0	0	0.38773	1	4298	4298		5.7319	2.4505	1	88385	+		27486	14923	15804	15805	34050	34050					0.06495441863512497
LTDNIQDEFF	10	Unmodified	_LTDNIQDEFF_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.2888793945312	2	621.287868	1240.56118	0.27364	0.00017001	0.93574	0.00058137	1.2094	0.00075137	621.2883632536966	58.934	0.44785	58.934	58.767	59.215	0					26	15	2	0	0	0	0.36015	1	14340	14340		10.8	2.0541	1	279990			27487	644	15805	15806	34051	34051					-0.04947507181327637
LTDNPREIS	9	Unmodified	_LTDNPREIS_					0	0	0		ENST00000535170.5_1_7:99631970-99632105:+|nuORF	ENST00000535170.5_1_7:99631970-99632105:+|nuORF	ENST00000535170.5_1_7:99631970-99632105:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7702026367188	2	522.769645	1043.52474	0.33306	0.00017411	0.53669	0.00028057	0.86975	0.00045468	522.7701079756018	16.224	0.43868	16.162	15.975	16.414	-0.062534					30	14	3	0	0	0	0.24467	1	1268	1268		17.113	4.8722	1	71115			27488	11669	15806	15807	34052	34052					0.004716607126283634
LTDNPREIS	9	Unmodified	_LTDNPREIS_					0	0	0		ENST00000535170.5_1_7:99631970-99632105:+|nuORF	ENST00000535170.5_1_7:99631970-99632105:+|nuORF	ENST00000535170.5_1_7:99631970-99632105:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	522.769645	1043.52474	0.31885	0.00016669	0.49529	0.00025892	0.81414	0.00042561	522.7699725542914	16.182	0.42423	16.182	15.981	16.405	0	-0.00011412	-0.00011025	NaN	17.113	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56126			27489	11669	15806	15807							0.004716607126283634
LTDNPREIS	9	Unmodified	_LTDNPREIS_					0	0	0		ENST00000535170.5_1_7:99631970-99632105:+|nuORF	ENST00000535170.5_1_7:99631970-99632105:+|nuORF	ENST00000535170.5_1_7:99631970-99632105:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	522.769645	1043.52474	0.21669	0.00011328	0.68811	0.00035972	0.9048	0.000473	522.7699338893851	16.317	0.4342	16.203	15.987	16.421	-0.11434	0.02044	9.1356E-05	NaN	17.113	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67760			27490	11669	15806	15807							0.004716607126283634
LTDPGIYSRNW	11	Unmodified	_LTDPGIYSRNW_					0	0	0		ENST00000400959.7_2_1:209929433-209933385:+|nuORF	ENST00000400959.7_2_1:209929433-209933385:+|nuORF	ENST00000400959.7_2_1:209929433-209933385:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7879333496094	3	441.222693	1320.64625	-0.57462	-0.00025354	-3.3331	-0.0014706	-3.9077	-0.0017242	441.22081174865195	34.483	0.13766	34.483	34.418	34.556	0					5	4	2	0	0	0	0.33296	1	6798	6798		2.6312	0.19645	1	57315			27491	10188	15807	15808	34053	34053					-0.0012471692484723462
LTDPTSHF	8	Unmodified	_LTDPTSHF_					0	0	0		ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENST00000395756.5_1_17:17715938-17721122:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.5673522949219	2	459.2218	916.429047	0.21089	9.6844E-05	1.5146	0.00069552	1.7255	0.00079237	459.2225166271313	62.334	0.71481	62.325	61.931	62.646	-0.0085526					43	26	3	0	0	0	0.34046	1	15267	15267		14.582	1.0738	1	131150			27492	10095	15808	15809	34054	34054					-0.03251067407609298
LTEAPLNPK	9	Unmodified	_LTEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ACTG1|p.L104V|1|0.09|ENSG00000184009|chr17:81511956-81511956|G/C|missense_variant;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7817077636719	2	491.782025	981.549496	0.43997	0.00021637	-0.45394	-0.00022324	-0.013969	-6.8696E-06	491.781748250037	30.269	0.95601	30.269	29.718	30.674	0					54	33	2	0	0	0	0.037019	3	5498	5498;5548;5598		57.722	11.701	1	276670			27493	1050;2147	15809	15810	34055;34056;34057	34055					0.057983405859772574
LTEAPLNPK	9	Unmodified	_LTEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ACTG1|p.L104V|1|0.09|ENSG00000184009|chr17:81511956-81511956|G/C|missense_variant;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7818603515625	2	491.782025	981.549496	0.42562	0.00020931	-0.30805	-0.0001515	0.11757	5.7819E-05	491.78180666829104	30.233	0.87597	30.261	29.762	30.638	0.027946					54	30	3	0	0	0	0.020233	1	5506	5506		63.961	17.94	1	278510			27494	1050;2147	15809	15810	34058	34058					0.057983405859772574
LTEAPLNPK	9	Unmodified	_LTEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ACTG1|p.L104V|1|0.09|ENSG00000184009|chr17:81511956-81511956|G/C|missense_variant;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.78179931640625	2	491.782025	981.549496	0.035677	1.7545E-05	0.34127	0.00016783	0.37695	0.00018538	491.78202525178693	30.237	0.91045	30.264	29.728	30.638	0.027157					60	31	3	0	0	0	0.0042138	1	5503	5503		92.653	37.88	1	305420			27495	1050;2147	15809	15810	34059	34059					0.057983405859772574
LTEERSGCL	9	Unmodified	_LTEERSGCL_					0	0	0			REV__ENST00000555446.1_1_14:24025356-24025548:+|nuORF	REV__ENST00000555446.1_1_14:24025356-24025548:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.783203125	2	504.244949	1006.47534	0.42136	0.00021247	-2.1255	-0.0010718	-1.7041	-0.0008593	504.24407696641015	71.301	0.40931	71.276	71.13	71.54	-0.024872					24	14	2	0	0	0	0.13643	1	18102	18102		45.7	25.285	1	302330	+		27496	22250	15810	15811	34060	34060					-0.02763370567822676
LTEFMWSL	8	Unmodified	_LTEFMWSL_					0	0	0			REV__ENST00000310118.8_1_3:184025759-184026245:+|nuORF	REV__ENST00000310118.8_1_3:184025759-184026245:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8251342773438	2	513.751879	1025.4892	0.22846	0.00011737	-3.6797	-0.0018905	-3.4513	-0.0017731	513.7497508133506	33.215	0.52679	33.27	32.973	33.499	0.055309					23	18	2	0	0	0	0.33245	1	6454	6454		8.5933	0	1	81610	+		27497	19892	15811	15812	34061	34061					-0.02252093068727845
LTEFQHEF	8	Unmodified	_LTEFQHEF_					0	0	0			REV__ENSG00000255112|ENST00000526991|CHMP1B	REV__ENSG00000255112|ENST00000526991|CHMP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3029174804688	2	525.748182	1049.48181	0.62541	0.00032881	0.3647	0.00019174	0.99011	0.00052055	525.7482963817665	56.872	0.63789	56.872	56.686	57.323	0					41	23	2	0	0	0	0.34185	1	13756	13756		2.5775	0	1	158490	+		27498	19239	15812	15813	34062	34062					-0.04095109344825687
LTEFQHEF	8	Unmodified	_LTEFQHEF_					0	0	0			REV__ENSG00000255112|ENST00000526991|CHMP1B	REV__ENSG00000255112|ENST00000526991|CHMP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3032836914062	2	525.748182	1049.48181	0.55685	0.00029277	0.34623	0.00018203	0.90308	0.00047479	525.7481377579214	56.753	0.7086	56.832	56.603	57.311	0.078671					41	26	2	0	0	0	0.34185	1	13714	13714		5.7604	0	1	232650	+		27499	19239	15812	15813	34063	34063					-0.04095109344825687
LTEGRRYE	8	Unmodified	_LTEGRRYE_					0	0	0			REV__ENSG00000162390|ENST00000343744|ACOT11	REV__ENSG00000162390|ENST00000343744|ACOT11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2501220703125	2	512.26453	1022.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.258	1	34.325	33.825	34.825	0.06636								0	0	0	0.35163	1	6736	6736		13.906	1.3745	1		+		27500	16975	15813	15814	34064	34064					0.004150977780341236
LTEKKKPTWGR	11	Unmodified	_LTEKKKPTWGR_					0	0	0		ENSG00000140470|ENST00000268070|ADAMTS17;ENST00000378898.8_1_15:100603866-100879329:-|nuORF	ENSG00000140470|ENST00000268070|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2713623046875	3	448.597983	1342.77212	0.34164	0.00015326	-0.362	-0.00016239	-0.020356	-9.1316E-06	448.59771362519507	35.914	0.59339	35.914	35.575	36.168	0					46	21	3	0	0	0	0.33025	1	7149	7149		0.92553	0	1	238490			27501	4307	15814	15815	34065	34065					0.11444414651214174
LTELCFSVI	9	Unmodified	_LTELCFSVI_					0	0	0			REV__nc|ENSG00000177301|P16389-2|KCNA2	REV__nc|ENSG00000177301|P16389-2|KCNA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7816772460938	2	512.772811	1023.53107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.643	1	85.643	85.143	86.143	0								0	0	0	0.20238	1	22505	22505		21.747	3.6117	1		+		27502	17980	15815	15816	34066	34066					0.020244626197836624
LTELFFMH	8	Unmodified	_LTELFFMH_					0	0	0		nc|ENSG00000156471|P48651-2|PTDSS1;ENSG00000156471|ENST00000517309|PTDSS1	nc|ENSG00000156471|P48651-2|PTDSS1	nc|ENSG00000156471|P48651-2|PTDSS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.321533203125	2	519.259871	1036.50519	0.25954	0.00013477	0.39469	0.00020494	0.65423	0.00033971	519.2601690677554	57.577	1.3546	57.56	56.756	58.111	-0.0172					70	49	2	0	0	0	0.32778	1	13913	13913		14.582	3.7578	1	377940			27503	5236	15816	15817	34067	34067					-0.011603868318388777
LTELILLPP	9	Unmodified	_LTELILLPP_					0	0	0		nc|ENSG00000099337|Q9Y257-2|KCNK6;ENSG00000099337|ENST00000263372|KCNK6	nc|ENSG00000099337|Q9Y257-2|KCNK6	nc|ENSG00000099337|Q9Y257-2|KCNK6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.3058166503906	2	504.820618	1007.62668	0.50228	0.00025356	-4.0739	-0.0020566	-3.5716	-0.001803	504.8186319053752	37.17	0.59291	37.263	36.98	37.573	0.093014					30	21	2	0	0	0	0.2322	1	7696	7696		14.838	0	1	144860			27504	1484	15817	15818	34068	34068					0.12317558802317308
LTELRPHSI	9	Unmodified	_LTELRPHSI_					0	0	0			REV__nc|ENSG00000010626|Q53EV4-2|LRRC23	REV__nc|ENSG00000010626|Q53EV4-2|LRRC23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7907104492188	2	533.306198	1064.59784	0.60319	0.00032169	-1.1559	-0.00061643	-0.55267	-0.00029474	533.3059964988541	46.754	0.31223	46.754	46.592	46.904	0					23	10	3	0	0	0	0.18123	1	10565	10565		27.629	4.8925	1	423180	+		27505	13417	15818	15819	34069	34069					0.06812834225888764
LTETHKCFLE	10	Unmodified	_LTETHKCFLE_					0	0	0		ENSG00000155816|ENST00000319653|FMN2;nc|ENSG00000155816|Q9NZ56-2|FMN2	ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.2456665039062	2	610.802631	1219.59071	0.38608	0.00023582	-0.3976	-0.00024286	-0.01152	-7.0367E-06	610.8022935567061	57.601	0.33738	57.601	57.405	57.743	0					22	11	3	0	0	0	0.30555	1	13924	13924		15.248	1.6336	1	420090			27506	5197	15819	15820	34070	34070					-0.010302664368737169
LTFFHFFFFF	10	Unmodified	_LTFFHFFFFF_					0	0	0		ENST00000226230.7_1_17:26653793-26654375:+|nuORF	ENST00000226230.7_1_17:26653793-26654375:+|nuORF	ENST00000226230.7_1_17:26653793-26654375:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7713317871094	3	467.233982	1398.68012	-0.081766	-3.8204E-05	-3.9738	-0.0018567	-4.0556	-0.0018949	467.2317570571878	39.407	0.32773	39.5	39.307	39.635	0.09267					17	11	2	0	0	0	0.31942	1	8318	8318		6.1918	0.40842	1	134690			27507	8847	15820	15821	34071	34071					-0.0032764369516371517
LTFFHFFFFF	10	Unmodified	_LTFFHFFFFF_					0	0	0		ENST00000226230.7_1_17:26653793-26654375:+|nuORF	ENST00000226230.7_1_17:26653793-26654375:+|nuORF	ENST00000226230.7_1_17:26653793-26654375:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7715148925781	3	467.233982	1398.68012	0.22326	0.00010432	-3.6628	-0.0017114	-3.4396	-0.0016071	467.2319774001339	39.391	0.38396	39.49	39.292	39.676	0.099407					17	13	2	0	0	0	0.31746	1	8306	8306		3.5871	0	1	210430			27508	8847	15820	15821	34072	34072					-0.0032764369516371517
LTFFHPFLVY	10	Unmodified	_LTFFHPFLVY_					0	0	0		ENSG00000134802|ENST00000395124|SLC43A3;nc|ENSG00000134802|Q8NBI5-2|SLC43A3	ENSG00000134802|ENST00000395124|SLC43A3	ENSG00000134802|ENST00000395124|SLC43A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.61138916015625	3	428.56562	1282.67503	0.053121	2.2766E-05	-3.3597	-0.0014398	-3.3066	-0.0014171	428.56433112538457	44.955	0.64674	45.023	44.867	45.514	0.068569					43	22	3	0	0	0	0.3179	1	9967	9967		5.7834	1.0675	1	230210			27509	3815	15821	15822	34073	34073					0.04500052442244851
LTFGRINILTL	11	Unmodified	_LTFGRINILTL_					0	0	0			REV__ENST00000436120.6_1_19:37880008-37880230:+|nuORF	REV__ENST00000436120.6_1_19:37880008-37880230:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.9272766113281	3	420.927329	1259.76016	-0.035623	-1.4995E-05	0.10193	4.2907E-05	0.066312	2.7913E-05	420.9279583590691	35.564	2.565	35.564	35.17	37.735	0					321	92	6	0	0	0	0.17507	1	7394	7394		22.109	1.2377	1	73340000	+		27510	21001	15822	15823	34074	34074					0.14066797908026274
LTFIVANP	8	Unmodified	_LTFIVANP_					0	0	0			REV__ENST00000561895.1_1_16:88718935-88721317:-|nuORF	REV__ENST00000561895.1_1_16:88718935-88721317:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2103576660156	2	437.755278	873.496004	-0.045612	-1.9967E-05	2.12	0.00092804	2.0744	0.00090808	437.7562012778129	25.136	0.73892	25.136	24.706	25.445	0					43	25	2	0	0	0	0.34167	1	3888	3888		11.64	3.047	1	140040	+		27511	17387	15823	15824	34075	34075					0.05419587874132503
LTFLLILFLLF	11	Unmodified	_LTFLLILFLLF_					0	0	0		ENST00000465425.1_1_19:36494241-36496384:-|nuORF;nc|ENSG00000181392|Q8N205-2|SYNE4;ENSG00000181392|ENST00000324444|SYNE4	ENST00000465425.1_1_19:36494241-36496384:-|nuORF	ENST00000465425.1_1_19:36494241-36496384:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.6247863769531	3	451.624587	1351.85193	0.33123	0.00014959	-1.1807	-0.00053322	-0.84943	-0.00038363	451.62455022710236	40.408	1.2551	40.408	40.05	41.305	0					168	45	5	0	0	0	0.46554	1	8588	8588		2.6312	2.1253	1	1446700			27512	7233	15824	15825	34076	34076					0.19008088272494206
LTFNFQGIA	9	Unmodified	_LTFNFQGIA_					0	0	0		ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.277099609375	2	505.768917	1009.52328	0.91251	0.00046152	-1.4202	-0.00071829	-0.50768	-0.00025677	505.7683072233911	50.371	0.51399	50.391	50.038	50.552	0.020695					29	18	2	0	0	0	0.20651	1	11617	11617		20.454	0	1	347740			27513	2356	15825	15826	34077	34077					0.018900714145161146
LTFPHYETTG	10	Unmodified	_LTFPHYETTG_					0	0	0			REV__nc|ENSG00000140279|Q9NRD8|DUOX2	REV__nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3040771484375	2	583.279846	1164.54514	0.38536	0.00022478	2.2223	0.0012963	2.6077	0.001521	583.2814946808069	48.878	1.1973	48.922	48.497	49.695	0.044891					70	43	2	0	0	0	0.31267	1	11244	11244		10.074	2.1638	1	547010	+		27514	16024	15826	15827	34078	34078					-0.030551686275885004
LTFRLRLRGDV	11	Unmodified	_LTFRLRLRGDV_					0	0	0			REV__ENSG00000110076|ENST00000265459|NRXN2;REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF	REV__ENSG00000110076|ENST00000265459|NRXN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.7261962890625	3	449.273611	1344.799	0.27698	0.00012444	-1.4674	-0.00065925	-1.1904	-0.00053481	449.2732728312689	39.776	0.62128	39.868	39.662	40.284	0.09267					26	21	2	0	0	0	0.33236	1	8482	8482		4.4062	4.4062	1	654210	+		27515	14661;21285	15827	15828	34079	34079					0.14039523262363218
LTFRSPVRT	9	Unmodified	_LTFRSPVRT_					0	0	0		ENST00000469197.5_1_9:284409-284469:+|nuORF	ENST00000469197.5_1_9:284409-284469:+|nuORF	ENST00000469197.5_1_9:284409-284469:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8139038085938	2	538.81419	1075.61383	0.66979	0.00036089	-0.47876	-0.00025796	0.19103	0.00010293	538.8138670974325	33.426	0.66465	33.493	33.266	33.93	0.06636					45	23	3	0	0	0	0.25112	1	6482	6482		16.149	0.30192	1	418750			27516	10852	15828	15829	34080	34080					0.07904540462800469
LTFRSPVRT	9	Unmodified	_LTFRSPVRT_					0	0	0		ENST00000469197.5_1_9:284409-284469:+|nuORF	ENST00000469197.5_1_9:284409-284469:+|nuORF	ENST00000469197.5_1_9:284409-284469:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	538.81419	1075.61383	0.34887	0.00018798	-0.20099	-0.0001083	0.14788	7.9681E-05	538.8139689006847	33.43	0.52679	33.496	33.297	33.824	0.066704	-0.024345	0.00026207	NaN	16.149	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449790			27517	10852	15828	15829							0.07904540462800469
LTFSPCVL	8	Carbamidomethyl (C)	_LTFSPC(Carbamidomethyl (C))VL_	LTFSPC(1)VL		LTFSPC(57)VL		0	1	0		nc|ENSG00000113389|P17342-2|NPR3;ENSG00000113389|ENST00000265074|NPR3	nc|ENSG00000113389|P17342-2|NPR3	nc|ENSG00000113389|P17342-2|NPR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.755859375	2	468.746596	935.478639	0.16213	7.6E-05	1.9582	0.0009179	2.1203	0.0009939	468.7474354906988	63.043	0.55389	63.138	62.957	63.511	0.095722					27	19	2	0	0	0	0.15131	1	15572	15572		56.541	16.093	1	216440			27518	2501	15829	15830	34081	34081	3				0.008319242768379809
LTFVTLSGEL	10	Unmodified	_LTFVTLSGEL_					0	0	0		ENST00000277795.8_1_10:70048686-70066625:-|nuORF;nc|ENSG00000108187|P30039-2|PBLD;PBLD|p.S238Tfs*48|1|0.05|ENSG00000108187|chr10:68285389-68285390|-/CCAATAAG|frameshift_variant;ENSG00000108187|ENST00000358769|PBLD	ENST00000277795.8_1_10:70048686-70066625:-|nuORF	ENST00000277795.8_1_10:70048686-70066625:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.310546875	2	540.30279	1078.59103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.631	1	89.722	89.222	90.222	0.090569								0	0	0	0.33119	1	23720	23720		22.736	5.794	1				27519	2166	15830	15831	34082	34082					0.054874765546856
LTFYMPAFFSF	11	Unmodified	_LTFYMPAFFSF_					0	0	0		nc|ENSG00000273085|Q8NGJ3|OR52E1	nc|ENSG00000273085|Q8NGJ3|OR52E1	nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2767333984375	3	457.554504	1369.64168	-0.021567	-9.8681E-06	-0.165	-7.5495E-05	-0.18656	-8.5363E-05	457.88861928867766	42.572	0.4838	42.658	42.407	42.891	0.085197					32	17	3	0	0	0	0.33202	1	9215	9215		2.8433	2.8433	1	257690			27520	12994	15831	15832	34083	34083					-0.028353173920095287
LTGFTAILLI	10	Unmodified	_LTGFTAILLI_					0	0	0		nc|ENSG00000138821|Q9C0K1-2|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3198852539062	2	531.333893	1060.65323	0.18749	9.9621E-05	-0.3513	-0.00018666	-0.16381	-8.7037E-05	531.3335473757796	97.323	0.36417	97.323	97.15	97.514	0					72	34	3	0	0	0	0.14015	1	26030	26030		39.957	7.6518	1	101630			27521	4200	15832	15833	34084	34084					0.12533247693681915
LTGKYKYEDK	10	Unmodified	_LTGKYKYEDK_					0	0	0		ENST00000445747.1_1_X:118011894-118012802:-|nuORF;nc|ENSG00000211454|Q8NHP1|AKR7L;ENSG00000162482|ENST00000361640|AKR7A3;ENSG00000053371|ENST00000235835|AKR7A2	ENST00000445747.1_1_X:118011894-118012802:-|nuORF	ENST00000445747.1_1_X:118011894-118012802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.58209228515625	3	415.555561	1243.64485	0.19773	8.2168E-05	1.2307	0.00051143	1.4284	0.0005936	415.5560623222894	23.322	0.58054	23.277	23.033	23.614	-0.044867					50	20	4	0	0	0	0.31555	1	3416	3416		9.7643	3.5724	1	183500			27522	677	15833	15834	34085	34085					0.03277648986386339
LTGLPNALT	9	Unmodified	_LTGLPNALT_					0	0	0			REV__ENSG00000161055|ENST00000292641|SCGB3A1	REV__ENSG00000161055|ENST00000292641|SCGB3A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.7261962890625	2	450.263468	898.512382	0.28391	0.00012784	-0.6733	-0.00030316	-0.38939	-0.00017533	450.26304605126467	39.78	0.48855	39.872	39.635	40.123	0.09267					29	16	2	0	0	0	0.18123	1	8482	8482		34.402	2.0962	1	348610	+		27523	16935	15834	15835	34086	34086					0.05906669040234647
LTGNTHILR	9	Unmodified	_LTGNTHILR_					0	0	0			REV__ENSG00000177103|ENST00000651296|DSCAML1	REV__ENSG00000177103|ENST00000651296|DSCAML1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7986450195312	2	512.79854	1023.58253	0.23321	0.00011959	0.063225	3.2422E-05	0.29643	0.00015201	512.7985788474793	24.62	0.52285	24.564	24.315	24.837	-0.055931					41	17	3	0	0	0	0.29176	1	3811	3811		10.074	0	1	161240	+		27524	17973	15835	15836	34087	34087					0.07167967428722477
LTGPQAISK	9	Unmodified	_LTGPQAISK_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000490566.1_1_2:218669184-218678576:-|nuORF;ENST00000480416.1_1_2:218674544-218674989:-|nuORF	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.1642761230469	2	457.768917	913.523281	0.03476	1.5912E-05	-0.43629	-0.00019972	-0.40153	-0.00018381	457.768654380395	26.492	0.40055	26.454	26.263	26.664	-0.038671					22	13	2	0	0	0	0.23749	1	4381	4381		15.248	4.4246	1	98543			27525	1129	15836	15837	34088	34088					0.06306071414519465
LTGPVMPVR	9	Oxidation (M)	_LTGPVM(Oxidation (M))PVR_		LTGPVM(1)PVR		LTGPVM(110)PVR	0	0	1		nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2786865234375	2	493.278595	984.542637	0.34244	0.00016892	0.0283	1.396E-05	0.37074	0.00018288	493.27859227586515	31.759	1.2388	31.759	31.394	32.633	0					101	44	3	0	0	0	0.0016361	3	5958	5958;6015;6078		114.65	78.522	1	5056700			27526	6183	15837	15838	34089;34090;34091	34089		727			0.049747044337891566
LTGPVMPVR	9	Oxidation (M)	_LTGPVM(Oxidation (M))PVR_		LTGPVM(1)PVR		LTGPVM(110)PVR	0	0	1		nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.27874755859375	2	493.278595	984.542637	0.36806	0.00018156	0.12967	6.3965E-05	0.49774	0.00024552	493.2785821758656	31.667	1.1211	31.709	31.372	32.493	0.042366					85	39	3	0	0	0	0.0016361	3	5943	5897;5943;5985		114.65	78.522	1	5394300			27527	6183	15837	15838	34092;34093;34094	34093		727			0.049747044337891566
LTGPVMPVR	9	Oxidation (M)	_LTGPVM(Oxidation (M))PVR_		LTGPVM(1)PVR		LTGPVM(110)PVR	0	0	1		nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.27880859375	2	493.278595	984.542637	0.36121	0.00017818	0.1057	5.2139E-05	0.46691	0.00023032	493.2786149905121	31.682	1.1794	31.723	31.334	32.513	0.040991					91	41	3	0	0	0	0.0016361	3	5935	5890;5935;5985		114.65	78.522	1	5130600			27528	6183	15837	15838	34095;34096;34097	34096		727			0.049747044337891566
LTGRIEIAPA	10	Unmodified	_LTGRIEIAPA_					0	0	0			REV__THE1B-int_dup38|chr1:59888735-59890293:-|2.5909301945492014|0.1975042163789512|3.71|511.0|22|2|sense	REV__THE1B-int_dup38|chr1:59888735-59890293:-|2.5909301945492014|0.1975042163789512|3.71|511.0|22|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7755737304688	2	520.808574	1039.60259	0.26835	0.00013976	-0.16648	-8.6706E-05	0.10187	5.3055E-05	520.8085624628625	41.216	0.43443	41.312	40.987	41.422	0.096626					29	15	3	0	0	0	0.29038	1	8808	8808		24.021	3.5669	1	280070	+		27529	23326	15838	15839	34098	34098					0.08437718368645619
LTGRIEIAPA	10	Unmodified	_LTGRIEIAPA_					0	0	0			REV__THE1B-int_dup38|chr1:59888735-59890293:-|2.5909301945492014|0.1975042163789512|3.71|511.0|22|2|sense	REV__THE1B-int_dup38|chr1:59888735-59890293:-|2.5909301945492014|0.1975042163789512|3.71|511.0|22|2|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	520.808574	1039.60259	0.29475	0.00015351	0.19204	0.00010002	0.4868	0.00025353	520.8088634873461	41.142	0.4535	41.233	41.029	41.482	0.090252	-0.039803	0.00024178	NaN	24.021	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315710	+		27530	23326	15838	15839							0.08437718368645619
LTGTAPNLILL	11	Unmodified	_LTGTAPNLILL_					0	0	0		nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3;ENST00000413164.6_1_20:45217879-45224950:-|nuORF	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.7588500976562	2	563.347532	1124.68051	0.6804	0.0003833	-1.7689	-0.0009965	-1.0885	-0.0006132	563.3465428906354	77.599	0.60938	77.654	77.258	77.867	0.05542					31	21	2	0	0	0	0.33149	1	20075	20075		5.2969	2.5617	1	212160			27531	5351	15839	15840	34099	34099					0.12315731234048144
LTGVLYNAF	9	Unmodified	_LTGVLYNAF_					0	0	0			REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__ENSG00000070915|ENST00000563236|SLC12A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2532653808594	2	499.271293	996.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.758	1	61.758	61.258	62.258	0								0	0	0	0.21726	1	15195	15195		16.942	1.1741	1		+		27532	13740	15840	15841	34100	34100					0.02962955557291025
LTHDALGLSTF	11	Unmodified	_LTHDALGLSTF_					0	0	0		ENSG00000215187|ENST00000399742|FAM166B	ENSG00000215187|ENST00000399742|FAM166B	ENSG00000215187|ENST00000399742|FAM166B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.8095703125	2	587.808771	1173.60299	0.18345	0.00010783	-0.97719	-0.0005744	-0.79375	-0.00046657	587.809456453468	69.685	0.87635	69.751	69.428	70.304	0.066048					98	30	4	0	0	0	0.36257	1	17584	17584		16.149	1.3108	1	904570			27533	8402	15841	15842	34101	34101					0.02313093297834712
LTHDGRVKL	9	Unmodified	_LTHDGRVKL_					0	0	0		nc|ENSG00000130669|O96013-2|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4	nc|ENSG00000130669|O96013-2|PAK4	nc|ENSG00000130669|O96013-2|PAK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7919921875	2	519.806365	1037.59818	0.12232	6.3581E-05	-0.2537	-0.00013187	-0.13138	-6.8293E-05	519.8061798523786	31.093	0.74992	31.121	30.81	31.559	0.027946					60	26	3	0	0	0	0.25314	1	5691	5691		15.847	4.2069	1	938530			27534	3494	15842	15843	34102	34102					0.08088253945743418
LTHGQAQVRA	10	Unmodified	_LTHGQAQVRA_					0	0	0			REV__ENST00000599652.5_1_19:49969097-49972327:+|nuORF	REV__ENST00000599652.5_1_19:49969097-49972327:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.3004760742188	2	540.799072	1079.58359	0.50171	0.00027133	0.21865	0.00011825	0.72037	0.00038957	541.3009278466488	91.362	0.68319	91.452	91.21	91.893	0.090668					116	49	3	0	0	0	0.39935	1	24234	24234		3.5965	0	1	236710	+		27535	16944	15843	15844	34103	34103					0.046981817976075035
LTHIFTLVFA	10	Unmodified	_LTHIFTLVFA_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.3374633789062	2	581.336967	1160.65938	0.2462	0.00014313	0.46094	0.00026796	0.70714	0.00041109	581.3372406977547	23.946	1.2626	23.874	23.53	24.793	-0.072559					123	42	5	0	0	0	0.38233	1	3710	3710		6.7232	0	1	1365000	+		27536	15485	15844	15845	34104	34104					0.08547765925186468
LTHKHETAK	9	Unmodified	_LTHKHETAK_					0	0	0			REV__ENSG00000144909|ENST00000296220|OSBPL11	REV__ENSG00000144909|ENST00000296220|OSBPL11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.796142578125	2	532.795998	1063.57744	0.32375	0.00017249	0.30238	0.00016111	0.62613	0.0003336	532.796038640626	28.963	0.71043	28.976	28.619	29.329	0.013475					63	25	3	0	0	0	0.29176	1	5073	5073		10.074	0.6908	1	799710	+		27537	16271	15845	15846	34105	34105					0.048196635660815446
LTHPWEVW	8	Unmodified	_LTHPWEVW_					0	0	0		ENST00000339488.8_2_6:48036008-48036398:-|nuORF	ENST00000339488.8_2_6:48036008-48036398:-|nuORF	ENST00000339488.8_2_6:48036008-48036398:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2947998046875	2	534.269084	1066.52362	0.87263	0.00046622	-1.4052	-0.00075073	-0.53252	-0.00028451	534.2683038530282	78.385	0.58117	78.385	78.144	78.725	0					32	21	2	0	0	0	0.34092	1	20279	20279		13.508	0.46542	1	193590			27538	9512	15846	15847	34106	34106					-0.006985088656392691
LTHQLQRL	8	Unmodified	_LTHQLQRL_					0	0	0		nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2639465332031	2	504.801083	1007.58761	-0.11446	-5.7779E-05	-0.57362	-0.00028957	-0.68808	-0.00034735	504.80073012578185	12.666	0.17916	12.598	12.491	12.671	-0.067496					9	5	2	0	0	0	0.344	1	214	214		2.5775	0	1	35202			27539	5471	15847	15848	34107	34107					0.0841227129130857
LTHRRRTKERN	11	Unmodified	_LTHRRRTKERN_					0	0	0		ENST00000282272.14_1_2:197852652-197852817:-|nuORF	ENST00000282272.14_1_2:197852652-197852817:-|nuORF	ENST00000282272.14_1_2:197852652-197852817:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.26934814453125	3	489.618552	1465.83383	0.098274	4.8117E-05	-0.86275	-0.00042242	-0.76448	-0.0003743	489.9523967504903	25.938	0.36521	25.899	25.813	26.178	-0.038671					16	12	2	0	0	0	0.33303	1	4224	4224		2.4348	1.4212	1	138830			27540	9125	15848	15849	34108	34108					0.11954159123047248
LTHYLLPY	8	Unmodified	_LTHYLLPY_					0	0	0		ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.28118896484375	2	510.28166	1018.54877	0.39445	0.00020128	-1.3316	-0.00067949	-0.93715	-0.00047821	510.2812099556887	52.908	0.57067	52.908	52.55	53.121	0					41	20	3	0	0	0	0.35375	1	12440	12440		24.674	6.5389	1	1109400			27541	6684	15849	15850	34109	34109					0.040235459369455384
LTHYLLPY	8	Unmodified	_LTHYLLPY_					0	0	0		ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2809143066406	2	510.28166	1018.54877	0.55035	0.00028083	-1.9436	-0.00099179	-1.3933	-0.00071096	510.2811304321746	52.943	0.52953	53	52.637	53.167	0.056255					37	18	3	0	0	0	0.35375	1	12432	12432		24.674	0.88411	1	1485800			27542	6684	15849	15850	34110	34110					0.040235459369455384
LTHYLLPY	8	Unmodified	_LTHYLLPY_					0	0	0		ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	ENSG00000172992|ENST00000651974|DCAKD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.28167724609375	2	510.28166	1018.54877	0.27216	0.00013888	-0.88738	-0.00045281	-0.61521	-0.00031393	510.2813550902682	52.997	0.56366	52.987	52.654	53.218	-0.0096054					39	20	3	0	0	0	0.35375	1	12455	12455		24.674	6.5389	1	1575800			27543	6684	15849	15850	34111	34111					0.040235459369455384
LTIAHRLHT	9	Unmodified	_LTIAHRLHT_					0	0	0		ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3141479492188	2	531.314358	1060.61416	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.153	1	91.153	90.653	91.653	0.00046539								0	0	0	0.25631	1	24182	24182		4.3292	0	1				27544	2581	15850	15851	34112	34112					0.08627960182639072
LTIFASFVL	9	Unmodified	_LTIFASFVL_					0	0	0			REV__nc|ENSG00000111885|P33908-2|MAN1A1	REV__nc|ENSG00000111885|P33908-2|MAN1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7999572753906	2	505.799686	1009.58482	0.55606	0.00028126	-0.36723	-0.00018575	0.18883	9.5509E-05	505.79960924121895	84.49	1.8792	84.49	84.109	85.989	0					192	71	5	0	0	0	0.12846	1	22129	22129		34.102	0	1	12866000	+		27545	14743	15851	15852	34113	34113					0.080410031138058
LTIGQETVKF	10	Unmodified	_LTIGQETVKF_					0	0	0			REV__ENSG00000131746|ENST00000254051|TNS4	REV__ENSG00000131746|ENST00000254051|TNS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.33447265625	2	568.321514	1134.62847	0.54118	0.00030756	0.92769	0.00052723	1.4689	0.00083479	568.3220358255584	48.727	0.38484	48.772	48.66	49.045	0.044891					19	13	2	0	0	0	0.27248	1	11211	11211		23.79	4.5328	1	435860	+		27546	15532	15852	15853	34114	34114					0.06654567820260127
LTIKEDFAVAP	11	Unmodified	_LTIKEDFAVAP_					0	0	0		ENST00000372025.4_1_1:46152902-46153073:+|nuORF	ENST00000372025.4_1_1:46152902-46153073:+|nuORF	ENST00000372025.4_1_1:46152902-46153073:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8744506835938	2	602.334621	1202.65469	0.51394	0.00030956	-0.23573	-0.00014199	0.27821	0.00016758	602.3343731146134	56.979	0.42718	57.057	56.909	57.336	0.078674					26	15	2	0	0	0	0.3239	1	13793	13793		8.1555	0.54658	1	250780			27547	9832	15853	15854	34115	34115					0.06146836991774762
LTIKEDFAVAP	11	Unmodified	_LTIKEDFAVAP_					0	0	0		ENST00000372025.4_1_1:46152902-46153073:+|nuORF	ENST00000372025.4_1_1:46152902-46153073:+|nuORF	ENST00000372025.4_1_1:46152902-46153073:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	602.334621	1202.65469	0.2992	0.00018022	0.14463	8.7115E-05	0.44383	0.00026733	602.3344805329759	57.228	0.46996	57.21	56.946	57.416	-0.017387	0.067053	0.00046389	NaN	8.1555	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280680			27548	9832	15853	15854							0.06146836991774762
LTILELHF	8	Unmodified	_LTILELHF_					0	0	0			REV__ENSG00000184434|ENST00000380055|LRRC19	REV__ENSG00000184434|ENST00000380055|LRRC19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2789001464844	2	493.289485	984.564418	0.15854	7.8208E-05	-1.5614	-0.00077023	-1.4029	-0.00069202	493.28866088174385	31.387	0.35135	31.387	31.202	31.553	0					16	12	2	0	0	0	0.421	1	5908	5908		15.768	1.1865	1	95866	+		27549	18317	15854	15855	34116	34116					0.07151832454007945
LTILELHF	8	Unmodified	_LTILELHF_					0	0	0			REV__ENSG00000184434|ENST00000380055|LRRC19	REV__ENSG00000184434|ENST00000380055|LRRC19	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.289485	984.564418	0.15854	7.8208E-05	-1.5614	-0.00077023	-1.4029	-0.00069202	493.28866088174385	31.387	0.35135	31.387	31.202	31.553	0	-0.033147	0.00020123	NaN	15.768	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95866	+		27550	18317	15854	15855							0.07151832454007945
LTILELHF	8	Unmodified	_LTILELHF_					0	0	0			REV__ENSG00000184434|ENST00000380055|LRRC19	REV__ENSG00000184434|ENST00000380055|LRRC19	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.289485	984.564418	0.31156	0.00015369	-1.9578	-0.00096577	-1.6463	-0.00081208	493.2884062287429	31.46	0.35716	31.501	31.178	31.535	0.040991	0.081461	-0.00018985	NaN	15.768	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91476	+		27551	18317	15854	15855							0.07151832454007945
LTIPESSTV	9	Unmodified	_LTIPESSTV_					0	0	0		nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7587890625	2	473.758215	945.501877	0.078443	3.7163E-05	1.2116	0.00057402	1.2901	0.00061118	473.75853525429903	24.942	0.75291	24.942	24.575	25.328	0					47	25	3	0	0	0	0.17787	1	3918	3918		26.884	5.137	1	231240			27552	4325	15855	15856	34117	34117					0.02694641595144276
LTIQSGEQPYK	11	Unmodified	_LTIQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.3331909179688	2	632.33261	1262.65067	0.45761	0.00028936	-0.10092	-6.3813E-05	0.3567	0.00022555	632.33242380343	36.065	0.47669	36.065	35.83	36.307	0					35	17	3	0	0	0	0.16129	1	7322	7322		47.053	29.61	1	412260			27553	6289	15856	15857	34118	34118					0.029847474980442712
LTIQSGEQPYK	11	Unmodified	_LTIQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.3326416015625	2	632.33261	1262.65067	0.58474	0.00036975	-0.31652	-0.00020015	0.26822	0.0001696	632.3324298916979	35.929	0.45769	36.015	35.762	36.22	0.08625					35	16	3	0	0	0	0.00049698	1	7253	7253		121.93	83.754	1	493100			27554	6289	15856	15857	34119	34119					0.029847474980442712
LTIQSGEQPYK	11	Unmodified	_LTIQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	632.33261	1262.65067	0.4522	0.00028594	0.28896	0.00018272	0.74115	0.00046866	632.332766448811	35.969	0.46257	36.051	35.797	36.259	0.082359	0.0069745	0.00034833	NaN	121.93	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284710			27555	6289	15856	15857							0.029847474980442712
LTIRQFYKKV	10	Unmodified	_LTIRQFYKKV_					0	0	0			REV__ENSG00000137080|ENST00000380225|IFNA21	REV__ENSG00000137080|ENST00000380225|IFNA21	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	648.8148803710938	2	648.395348	1294.77614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.341	1	98.403	97.903	98.903	0.061516								0	0	0	0.38198	1	26321	26321		1.4819	0	1		+		27556	15845	15857	15858	34120	34120					0.14054504144905877
LTIRQISLLGF	11	Unmodified	_LTIRQISLLGF_					0	0	0		ENSG00000135362|ENST00000530639|PRR5L;nc|ENSG00000135362|Q6MZQ0-4|PRR5L	ENSG00000135362|ENST00000530639|PRR5L	ENSG00000135362|ENST00000530639|PRR5L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.2349853515625	3	420.927329	1259.76016	0.099774	4.1997E-05	0.66519	0.00027999	0.76496	0.00032199	421.2620759719113	49.296	0.15697	49.296	49.164	49.321	0					7	5	2	0	0	0	0.33094	1	11351	11351		7.4771	1.2852	1	100610			27557	3866	15858	15859	34121	34121					0.1406679790804901
LTKDRRMLLRT	11	Unmodified	_LTKDRRMLLRT_					0	0	0			REV__ENST00000440419.1_1_9:127361220-127361343:-|nuORF	REV__ENST00000440419.1_1_9:127361220-127361343:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.9712829589844	3	468.281889	1401.82384	0.22665	0.00010613	-0.61953	-0.00029012	-0.39289	-0.00018398	468.2814611840821	43.269	0.70355	43.353	43.061	43.765	0.083992					58	25	3	0	0	0	0.33236	1	9537	9537		4.4062	0.56024	1	676260	+		27558	21044	15859	15860	34122	34122					0.13899835073470967
LTKFAEKFQ	9	Unmodified	_LTKFAEKFQ_					0	0	0		ENST00000451621.2_1_14:106743549-106744185:-|nuORF;ENSG00000103942|ENST00000450735|HOMER2;nc|ENSG00000103942|Q9NSB8|HOMER2	ENST00000451621.2_1_14:106743549-106744185:-|nuORF	ENST00000451621.2_1_14:106743549-106744185:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8212890625	2	556.310949	1110.60735	0.40129	0.00022324	-3.6483	-0.0020296	-3.247	-0.0018063	556.3090033998864	62.577	0.33565	62.674	62.546	62.881	0.096985					20	11	2	0	0	0	0.16284	1	15425	15425		24.021	0	1	724320			27559	1856	15860	15861	34123	34123					0.05646602511410492
LTKGHRSKGEK	11	Unmodified	_LTKGHRSKGEK_					0	0	0			REV__ENST00000372628.5_1_X:102863595-102864012:+|nuORF	REV__ENST00000372628.5_1_X:102863595-102864012:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.8951110839844	3	414.242199	1239.70477	0.52322	0.00021674	-0.066369	-2.7493E-05	0.45686	0.00018925	414.24192228182704	21.172	0.59438	21.062	20.894	21.488	-0.11003					48	20	3	0	0	0	0.33085	1	2750	2750		5.5233	0.80737	1	182490	+		27560	20416	15861	15862	34124	34124					0.09450384440265225
LTKINDVSL	9	Unmodified	_LTKINDVSL_					0	0	0		nc|ENSG00000106868|Q6UWL2-3|SUSD1;ENSG00000106868|ENST00000374270|SUSD1;nc|ENSG00000106868|Q6UWL2-2|SUSD1	nc|ENSG00000106868|Q6UWL2-3|SUSD1	nc|ENSG00000106868|Q6UWL2-3|SUSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.76495361328125	2	501.795132	1001.57571	0.48478	0.00024326	0.2584	0.00012967	0.74318	0.00037293	501.79494270484093	36.37	0.52555	36.452	36.259	36.785	0.082355					38	18	3	0	0	0	0.22596	1	7324	7324		21.747	6.4982	1	290280			27561	2106	15862	15863	34125	34125					0.07498609757476515
LTKLVKTEK	9	Unmodified	_LTKLVKTEK_					0	0	0			REV__ENSG00000169676|ENST00000304374|DRD5	REV__ENSG00000169676|ENST00000304374|DRD5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2459716796875	2	530.342249	1058.66995	0.28862	0.00015307	-1.2066	-0.00063991	-0.91798	-0.00048684	530.3412725175378	22.272	0.25215	22.222	22.064	22.316	-0.049377					14	8	2	0	0	0	0.24688	1	3111	3111		6.2058	2.9245	1	61457	+		27562	17531	15863	15864	34126	34126					0.14295748579615974
LTKLYNGF	8	Unmodified	_LTKLYNGF_					0	0	0			REV__ENST00000393262.3_1_12:76740476-76740554:-|nuORF	REV__ENST00000393262.3_1_12:76740476-76740554:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.33148193359375	2	478.26601	954.517468	0.0409	1.9561E-05	-0.076734	-3.6699E-05	-0.035834	-1.7138E-05	478.2657711584929	55.484	0.35765	55.484	55.325	55.682	0					17	12	2	0	0	0	0.3366	1	13232	13232		18.135	1.1927	1	170010	+		27563	20602	15864	15865	34127	34127					0.0383897290286086
LTKPSTPTK	9	Unmodified	_LTKPSTPTK_					0	0	0			REV__nc|ENSG00000104067|Q07157-2|TJP1	REV__nc|ENSG00000104067|Q07157-2|TJP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.1033020019531	2	486.78985	971.565146	0.096138	4.6799E-05	0.016006	7.7916E-06	0.11214	5.4591E-05	486.7898248404567	27.396	0.52385	27.396	27.091	27.615	0					46	17	4	0	0	0	0.20167	1	4636	4636		29.082	9.8246	1	220030	+		27564	14394	15865	15866	34128	34128					0.078226271030303
LTKPSTPTK	9	Unmodified	_LTKPSTPTK_					0	0	0			REV__nc|ENSG00000104067|Q07157-2|TJP1	REV__nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7777099609375	2	486.78985	971.565146	0.11223	5.4633E-05	-0.0394	-1.9179E-05	0.072831	3.5454E-05	486.7897241763642	27.4	0.54437	27.389	27.101	27.645	-0.01156					42	18	3	0	0	0	0.16283	1	4686	4686		29.082	2.1979	1	240900	+		27565	14394	15865	15866	34129	34129					0.078226271030303
LTKQKTRT	8	Unmodified	_LTKQKTRT_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;nc|ENSG00000126583|P05129-2|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2847595214844	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.57	1	113.57	113.07	114.07	0								0	0	0	0.37724	1	29497	29497		2.3027	0	1				27566	3280	15866	15867	34130	34130					0.09896851571477328
LTKQKTRT	8	Unmodified	_LTKQKTRT_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;nc|ENSG00000126583|P05129-2|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.28521728515625	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.46	1	114.46	113.96	114.96	0								0	0	0	0.37724	1	29697	29697		2.3027	0	1				27567	3280	15866	15867	34131	34131					0.09896851571477328
LTKQKTRT	8	Unmodified	_LTKQKTRT_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;nc|ENSG00000126583|P05129-2|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2853698730469	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.73	1	114.73	114.23	115.23	0								0	0	0	0.37724	1	29754	29754		2.3027	0	1				27568	3280	15866	15867	34132	34132					0.09896851571477328
LTKQKTRT	8	Unmodified	_LTKQKTRT_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;nc|ENSG00000126583|P05129-2|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.28533935546875	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.99	1	114.99	114.49	115.49	0								0	0	0	0.37724	1	29814	29814		2.3027	0	1				27569	3280	15866	15867	34133	34133					0.09896851571477328
LTKQKTRT	8	Unmodified	_LTKQKTRT_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;nc|ENSG00000126583|P05129-2|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.28509521484375	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.94	1	115.94	115.44	116.44	0								0	0	0	0.37724	1	30036	30036		2.3027	0	1				27570	3280	15866	15867	34134	34134					0.09896851571477328
LTKQKTRT	8	Unmodified	_LTKQKTRT_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;nc|ENSG00000126583|P05129-2|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2850341796875	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116	1	116	115.5	116.5	0								0	0	0	0.37724	1	30048	30048		2.3027	0	1				27571	3280	15866	15867	34135	34135					0.09896851571477328
LTKQKTRT	8	Unmodified	_LTKQKTRT_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;nc|ENSG00000126583|P05129-2|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.28497314453125	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.45	1	117.45	116.95	117.95	0								0	0	0	0.37724	1	30374	30374		2.3027	0	1				27572	3280	15866	15867	34136	34136					0.09896851571477328
LTKQKTRT	8	Unmodified	_LTKQKTRT_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;nc|ENSG00000126583|P05129-2|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2850341796875	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.04	1	118.04	117.54	118.54	0								0	0	0	0.37724	1	30505	30505		2.3027	0	1				27573	3280	15866	15867	34137	34137					0.09896851571477328
LTKQKTRT	8	Unmodified	_LTKQKTRT_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;nc|ENSG00000126583|P05129-2|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2850646972656	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.18	1	119.18	118.68	119.68	0								0	0	0	0.37724	1	30764	30764		2.3027	0	1				27574	3280	15866	15867	34138	34138					0.09896851571477328
LTKQKTRT	8	Unmodified	_LTKQKTRT_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;nc|ENSG00000126583|P05129-2|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.284912109375	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.95	1	115.93	115.43	116.43	-0.020988								0	0	0	0.37724	1	30052	30052		2.3027	0	1				27575	3280	15866	15867	34139	34139					0.09896851571477328
LTKQKTRT	8	Unmodified	_LTKQKTRT_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;nc|ENSG00000126583|P05129-2|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2853088378906	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.18	1	116.15	115.65	116.65	-0.022781								0	0	0	0.37724	1	30102	30102		2.3027	0	1				27576	3280	15866	15867	34140	34140					0.09896851571477328
LTKQKTRT	8	Unmodified	_LTKQKTRT_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;nc|ENSG00000126583|P05129-2|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2853088378906	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.12	1	118.09	117.59	118.59	-0.024147								0	0	0	0.37724	1	30548	30548		2.3027	0	1				27577	3280	15866	15867	34141	34141					0.09896851571477328
LTKQKTRT	8	Unmodified	_LTKQKTRT_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;nc|ENSG00000126583|P05129-2|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2853698730469	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.3	1	118.27	117.77	118.77	-0.024147								0	0	0	0.37724	1	30584	30584		2.3027	0	1				27578	3280	15866	15867	34142	34142					0.09896851571477328
LTKQKTRT	8	Unmodified	_LTKQKTRT_					0	0	0		ENSG00000126583|ENST00000263431|PRKCG;nc|ENSG00000126583|P05129-2|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	ENSG00000126583|ENST00000263431|PRKCG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.28515625	2	488.300916	974.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.13	1	117.16	116.66	117.66	0.023476								0	0	0	0.37724	1	30375	30375		2.3027	0	1				27579	3280	15866	15867	34143	34143					0.09896851571477328
LTKQVQKPF	9	Unmodified	_LTKQVQKPF_					0	0	0		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3168334960938	2	544.826766	1087.63898	0.56325	0.00030687	-2.4323	-0.0013252	-1.8691	-0.0010183	544.8249537523095	92.874	0.45836	92.963	92.81	93.268	0.089195					58	42	2	0	0	0	0.25526	1	24669	24669		4.3292	0.73274	1	109490			27580	3528	15867	15868	34144	34144					0.09866595265361866
LTKRSWQDRL	10	Unmodified	_LTKRSWQDRL_					0	0	0			REV__ENST00000461547.5_1_20:56179631-56185646:-|nuORF	REV__ENST00000461547.5_1_20:56179631-56185646:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.576171875	3	434.914083	1301.72042	-0.09827	-4.2739E-05	-0.042255	-1.8377E-05	-0.14053	-6.1116E-05	434.914127117547	38.087	0.2589	38.087	37.98	38.239	0					11	8	2	0	0	0	0.31867	1	7943	7943		7.9454	0.51632	1	125490	+		27581	21220	15868	15869	34145	34145					0.08162670957335649
LTKSGPKVVL	10	Unmodified	_LTKSGPKVVL_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.3369750976562	2	521.336967	1040.65938	0.43173	0.00022508	-0.80819	-0.00042134	-0.37646	-0.00019626	521.3368905838558	43.004	0.68052	43.004	42.786	43.467	0					61	24	3	0	0	0	0.10145	1	9444	9444		47.749	2.0088	1	827120	+		27582	17936	15869	15870	34146	34146					0.14067765925165077
LTKVGMQQM	9	Unmodified	_LTKVGMQQM_					0	0	0		nc|ENSG00000162836|Q9NPH0-2|ACP6;ENSG00000162836|ENST00000583509|ACP6	nc|ENSG00000162836|Q9NPH0-2|ACP6	nc|ENSG00000162836|Q9NPH0-2|ACP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8161010742188	2	518.269912	1034.52527	0.49009	0.000254	0.74728	0.00038729	1.2374	0.00064129	518.771424279909	58.617	0.36354	58.617	58.468	58.832	0					24	11	3	0	0	0	0.22061	1	14191	14191		18.146	10.236	1	171890			27583	5623	15870	15871	34147	34147					0.009390408364879477
LTKVGSRR	8	Unmodified	_LTKVGSRR_					0	0	0			REV__nc|ENSG00000171174|Q9H477-2|RBKS	REV__nc|ENSG00000171174|Q9H477-2|RBKS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.293212890625	2	458.787976	915.561398	0.26526	0.0001217	-0.26386	-0.00012106	0.0013996	6.4213E-07	458.7878395448706	82.791	1.7459	82.791	82.287	84.033	0					234	67	5	0	0	0	0.44569	1	21568	21568		7.2892	0	1	15662000	+		27584	17624	15871	15872	34148	34148					0.10024002119860143
LTLAMPTKP	9	Unmodified	_LTLAMPTKP_					0	0	0			REV__ENST00000530028.2_2_15:49171086-49171392:+|nuORF	REV__ENST00000530028.2_2_15:49171086-49171392:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002014160156	2	486.283346	970.552139	0.16358	7.9548E-05	0.85884	0.00041764	1.0224	0.00049719	486.2834103090674	73.746	1.1987	73.798	73.008	74.207	0.052361					82	42	3	0	0	0	0.25202	1	18673	18673		10.824	2.9138	1	2207300	+		27585	22006	15872	15873	34149	34149					0.06568472719311558
LTLAMPTKP	9	Unmodified	_LTLAMPTKP_					0	0	0			REV__ENST00000530028.2_2_15:49171086-49171392:+|nuORF	REV__ENST00000530028.2_2_15:49171086-49171392:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	486.283346	970.552139	0.0092672	4.5065E-06	0.70131	0.00034103	0.71058	0.00034554	486.28341851130114	73.771	0.76443	73.771	73.363	74.127	0	-0.031244	-6.2206E-05	NaN	10.824	70	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2201700	+		27586	22006	15872	15873							0.06568472719311558
LTLARATHVT	10	Unmodified	_LTLARATHVT_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2991943359375	2	541.819473	1081.62439	0.54091	0.00029308	0.45273	0.0002453	0.99363	0.00053837	541.8195425943367	37.722	0.48684	37.819	37.578	38.064	0.097527					42	17	3	0	0	0	0.3156	1	7799	7799		3.5965	0	1	560000			27587	2427	15873	15874	34150	34150					0.08684523117221943
LTLEKIVIF	9	Unmodified	_LTLEKIVIF_					0	0	0			REV__ENST00000430298.6_1_19:12222347-12224207:+|nuORF	REV__ENST00000430298.6_1_19:12222347-12224207:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7561645507812	2	538.341718	1074.66888	0.72885	0.00039237	-0.0097056	-5.2249E-06	0.71914	0.00038714	538.8433598757086	78.896	0.26053	78.896	78.776	79.036	0					13	10	2	0	0	0	0.24289	1	20441	20441		18.146	2.2992	1	72983	+		27588	20943	15874	15875	34151	34151					0.13453534210680118
LTLELADIL	9	Unmodified	_LTLELADIL_					0	0	0		nc|ENSG00000066248|Q8N5V2-3|NGEF;ENSG00000066248|ENST00000264051|NGEF	nc|ENSG00000066248|Q8N5V2-3|NGEF	nc|ENSG00000066248|Q8N5V2-3|NGEF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7983093261719	2	500.799883	999.585213	0.3422	0.00017137	-0.45879	-0.00022976	-0.11659	-5.8387E-05	500.7981387249862	81.771	1.3685	81.771	80.77	82.138	0					84	60	2	0	0	0	0.28674	1	21332	21332		10.824	3.5347	1	195060			27589	836	15875	15876	34152	34152					0.08540378042994234
LTLELADIL	9	Unmodified	_LTLELADIL_					0	0	0		nc|ENSG00000066248|Q8N5V2-3|NGEF;ENSG00000066248|ENST00000264051|NGEF	nc|ENSG00000066248|Q8N5V2-3|NGEF	nc|ENSG00000066248|Q8N5V2-3|NGEF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.290771484375	2	500.799883	999.585213	0.41649	0.00020858	0.11592	5.8055E-05	0.53242	0.00026663	500.798154375257	88.282	0.96564	88.279	87.812	88.778	-0.0028381					75	47	2	0	0	0	0.25202	1	23421	23421		3.5965	0	1	125100			27590	836	15875	15876	34153	34153					0.08540378042994234
LTLELADIL	9	Unmodified	_LTLELADIL_					0	0	0		nc|ENSG00000066248|Q8N5V2-3|NGEF;ENSG00000066248|ENST00000264051|NGEF	nc|ENSG00000066248|Q8N5V2-3|NGEF	nc|ENSG00000066248|Q8N5V2-3|NGEF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	500.799883	999.585213	0.089958	4.5051E-05	-0.4994	-0.0002501	-0.40944	-0.00020505	500.7981801066947	81.629	0.99115	81.698	81.078	82.069	0.068993	-0.04359	-0.00027942	NaN	10.824	76	47	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182840			27591	836	15875	15876							0.08540378042994234
LTLEQILEHL	10	Unmodified	_LTLEQILEHL_					0	0	0		nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;nc|ENSG00000143624|Q68E01-4|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.5668640136719	3	403.567689	1207.68124	-0.40712	-0.0001643	-1.8574	-0.00074957	-2.2645	-0.00091387	403.56668701942755	15.005	0.83629	14.895	14.449	15.285	-0.10981					61	29	3	0	0	0	0.39935	1	895	895		1.7423	0	1	102170			27592	4535	15876	15877	34154	34154					0.08570525883101254
LTLEQILEHL	10	Unmodified	_LTLEQILEHL_					0	0	0		nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;nc|ENSG00000143624|Q68E01-4|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	403.567689	1207.68124	-0.40712	-0.0001643	-1.8574	-0.00074957	-2.2645	-0.00091387	403.56668701942755	15.005	0.83629	14.895	14.449	15.285	-0.10981	0.0096595	0.00019198	NaN	1.7423	61	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102170			27593	4535	15876	15877							0.08570525883101254
LTLFKKPPA	9	Unmodified	_LTLFKKPPA_					0	0	0			REV__nc|ENSG00000082397|Q9Y2J2-3|EPB41L3	REV__nc|ENSG00000082397|Q9Y2J2-3|EPB41L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.8009033203125	2	507.820953	1013.62735	0.36014	0.00018289	0.31081	0.00015784	0.67095	0.00034072	507.8213493354382	37.133	0.76358	37.22	36.734	37.498	0.087406					43	27	2	0	0	0	0.22596	1	7516	7516		21.747	0	1	576920	+		27594	13921	15877	15878	34155	34155					0.1210839824203731
LTLFSLHGFS	10	Unmodified	_LTLFSLHGFS_					0	0	0		ENST00000562374.1_3_16:75656785-75656947:-|nuORF	ENST00000562374.1_3_16:75656785-75656947:-|nuORF	ENST00000562374.1_3_16:75656785-75656947:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.8145751953125	2	561.303124	1120.5917	0.38574	0.00021652	-0.62745	-0.00035219	-0.24171	-0.00013567	561.3029407033628	64.828	0.42961	64.92	64.66	65.09	0.09288					24	15	2	0	0	0	0.024589	1	16135	16135		74.929	0	1	1448400			27595	11922	15878	15879	34156	34156					0.03622315994402925
LTLGQRLGHIG	11	Unmodified	_LTLGQRLGHIG_					0	0	0			REV__nc|ENSG00000180185|Q6P587-3|FAHD1	REV__nc|ENSG00000180185|Q6P587-3|FAHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3770751953125	2	582.846022	1163.67749	-0.087465	-5.0978E-05	0.19675	0.00011467	0.10928	6.3696E-05	582.8460140026126	38.881	0.48069	38.881	38.623	39.104	0					33	16	3	0	0	0	0.32855	1	8157	8157		10.8	0.64894	1	233010	+		27596	23112	15879	15880	34157	34157					0.10219900899892309
LTLHDHCGK	9	Unmodified	_LTLHDHCGK_					0	0	0			REV__nc|ENSG00000131435|P50479-2|PDLIM4	REV__nc|ENSG00000131435|P50479-2|PDLIM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2565307617188	2	512.255651	1022.49675	0.27842	0.00014262	0.46761	0.00023954	0.74603	0.00038216	512.2557712664017	41.68	1.5303	41.68	41.175	42.706	0					156	60	4	0	0	0	0.31038	1	9172	9172		7.2892	2.0586	1	11192000	+		27597	15512	15880	15881	34158	34158					-0.013599407484548465
LTLHDHSCV	9	Unmodified	_LTLHDHSCV_					0	0	0			REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.271728515625	2	512.747659	1023.48076	0.29504	0.00015128	0.12304	6.3086E-05	0.41807	0.00021437	512.7478966594816	43.507	0.37859	43.507	43.362	43.741	0					24	13	3	0	0	0	0.24913	1	9610	9610		12.532	1.4171	1	215250	+		27598	14940	15881	15882	34159	34159					-0.030036469853598646
LTLHVVGCHI	10	Unmodified	_LTLHVVGCHI_					0	0	0			REV__ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	REV__ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8062744140625	2	546.305144	1090.59573	0.60934	0.00033288	2.225	0.0012155	2.8344	0.0015484	546.8061341233586	47.359	0.68887	47.411	47.088	47.777	0.052574					61	25	3	0	0	0	0.35558	1	10807	10807		11.64	2.2572	1	1070600	+		27599	17334	15882	15883	34160	34160					0.05406082216450159
LTLILSYNRLR	11	Unmodified	_LTLILSYNRLR_					0	0	0		nc|ENSG00000145147|O94813-3|SLIT2;nc|ENSG00000145147|O94813-2|SLIT2;ENSG00000145147|ENST00000504154|SLIT2;ENST00000509394.6_1_4:20544172-20554168:+|nuORF	nc|ENSG00000145147|O94813-3|SLIT2	nc|ENSG00000145147|O94813-3|SLIT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.5992736816406	3	454.613633	1360.81907	0.25313	0.00011507	-0.78192	-0.00035547	-0.52879	-0.0002404	454.6132055266971	44.919	0.52032	44.988	44.711	45.232	0.068569					45	18	3	0	0	0	0.46554	1	10068	10068		2.6312	0.19645	1	639600			27600	4633	15883	15884	34161	34161					0.15309274202354572
LTLINIRGFTL	11	Unmodified	_LTLINIRGFTL_					0	0	0		ENST00000436120.6_1_19:37880008-37880230:+|nuORF	ENST00000436120.6_1_19:37880008-37880230:+|nuORF	ENST00000436120.6_1_19:37880008-37880230:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.92694091796875	3	420.927329	1259.76016	-0.26442	-0.0001113	0.40162	0.00016905	0.1372	5.7753E-05	420.92808762773177	35.463	4.0169	35.548	35.124	39.141	0.085144					362	145	6	0	0	0	0.21521	1	7022	7022		19.144	0	1	74898000			27601	10520	15884	15885	34162	34162					0.1406679790804901
LTLINIRGFTL	11	Unmodified	_LTLINIRGFTL_					0	0	0		ENST00000436120.6_1_19:37880008-37880230:+|nuORF	ENST00000436120.6_1_19:37880008-37880230:+|nuORF	ENST00000436120.6_1_19:37880008-37880230:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.8558654785156	3	420.927329	1259.76016	0.089098	3.7504E-05	0.08584	3.6132E-05	0.17494	7.3636E-05	420.9273258553343	39.272	0.82187	39.371	39.155	39.977	0.099407					41	29	2	0	0	0	0.3325	1	8297	8297		4.1166	1.3814	1	238740			27602	10520	15884	15885	34163	34163					0.1406679790804901
LTLKWGRF	8	Unmodified	_LTLKWGRF_					0	0	0			REV__ENSG00000073734|ENST00000650372|ABCB11	REV__ENSG00000073734|ENST00000650372|ABCB11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8135986328125	2	510.803094	1019.59164	0.586	0.00029933	0.75125	0.00038374	1.3373	0.00068308	510.8035740854494	50.071	0.31113	50.115	49.957	50.268	0.044888					18	11	2	0	0	0	0.3671	1	11602	11602		23.148	1.4018	1	342410	+		27603	13780	15885	15886	34164	34164					0.08262360785045075
LTLLFNIIS	9	Unmodified	_LTLLFNIIS_					0	0	0		ENST00000430298.6_1_19:12222513-12222840:+|nuORF	ENST00000430298.6_1_19:12222513-12222840:+|nuORF	ENST00000430298.6_1_19:12222513-12222840:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8157958984375	2	517.318243	1032.62193	0.37878	0.00019595	-0.57223	-0.00029603	-0.19346	-0.00010008	517.3185256082099	63.029	1.4123	63.029	62.476	63.889	0					106	51	3	0	0	0	0.12642	1	15500	15500		34.402	2.0962	1	5246900			27604	10462	15886	15887	34165	34165					0.10692674659571821
LTLLFNIIS	9	Unmodified	_LTLLFNIIS_					0	0	0		ENST00000430298.6_1_19:12222513-12222840:+|nuORF	ENST00000430298.6_1_19:12222513-12222840:+|nuORF	ENST00000430298.6_1_19:12222513-12222840:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8157348632812	2	517.318243	1032.62193	0.36123	0.00018687	-0.8537	-0.00044163	-0.49247	-0.00025476	517.3184534502826	62.939	1.5995	63.034	62.52	64.119	0.095722					120	57	4	0	0	0	0.074552	1	15458	15458		43.772	9.3707	1	4796100			27605	10462	15886	15887	34166	34166					0.10692674659571821
LTLLFNIIS	9	Unmodified	_LTLLFNIIS_					0	0	0		ENST00000430298.6_1_19:12222513-12222840:+|nuORF	ENST00000430298.6_1_19:12222513-12222840:+|nuORF	ENST00000430298.6_1_19:12222513-12222840:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8157348632812	2	517.318243	1032.62193	0.23701	0.00012261	-0.74575	-0.00038579	-0.50875	-0.00026318	517.3185236212196	63.007	1.2537	62.998	62.465	63.719	-0.0085526					113	45	4	0	0	0	0.21447	1	15487	15487		21.537	1.0834	1	4582000			27606	10462	15886	15887	34167	34167					0.10692674659571821
LTLLKPVLG	9	Unmodified	_LTLLKPVLG_					0	0	0		ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7423095703125	2	477.323328	952.632104	0.30637	0.00014624	2.7859	0.0013298	3.0923	0.001476	477.32315111223653	66.414	0.46686	66.497	66.3	66.767	0.083832					31	16	3	0	0	0	0.25879	1	16563	16563		0	0	1	99695			27607	7276	15887	15888	34168	34168					0.15389282384808212
LTLLPPGLGR	10	Unmodified	_LTLLPPGLGR_					0	0	0			REV__ENST00000460343.5_1_3:53259774-53260053:-|nuORF	REV__ENST00000460343.5_1_3:53259774-53260053:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3214721679688	2	518.829309	1035.64407	0.34885	0.000181	-0.010899	-5.6548E-06	0.33796	0.00017534	518.8291312359885	57.353	0.42011	57.439	57.21	57.63	0.085621					19	14	2	0	0	0	0.31267	1	13870	13870		10.074	1.4806	1	232000	+		27608	21201	15888	15889	34169	34169					0.12766899127996112
LTLLQRQV	8	Unmodified	_LTLLQRQV_					0	0	0			REV__ENSG00000092820|ENST00000367075|EZR	REV__ENSG00000092820|ENST00000367075|EZR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.25518798828125	2	485.805834	969.597115	0.10348	5.0269E-05	-0.024476	-1.189E-05	0.079	3.8378E-05	485.80577375844666	27.163	0.59847	27.142	26.839	27.437	-0.02141					40	20	2	0	0	0	0.32886	1	4647	4647		21.747	1.293	1	643170	+		27609	14085	15889	15890	34170	34170					0.11110039576851705
LTLMPTEE	8	Unmodified	_LTLMPTEE_					0	0	0		nc|ENSG00000249715|A0AVI2-4|FER1L5	nc|ENSG00000249715|A0AVI2-4|FER1L5	nc|ENSG00000249715|A0AVI2-4|FER1L5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.76654052734375	2	467.233519	932.452484	0.16309	7.6202E-05	0.34389	0.00016068	0.50698	0.00023688	467.2336987560569	62.937	0.67497	62.929	62.542	63.217	-0.0085526					42	24	2	0	0	0	0.34092	1	15520	15520		13.508	3.3245	1	201650			27610	12972	15890	15891	34171	34171					-0.01644389685304759
LTLNVQFHLF	10	Unmodified	_LTLNVQFHLF_					0	0	0			REV__ENST00000540589.2_1_12:113357336-113369724:+|nuORF	REV__ENST00000540589.2_1_12:113357336-113369724:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2164001464844	3	411.232641	1230.67609	0.29791	0.00012251	-0.61869	-0.00025443	-0.32078	-0.00013191	411.23234317148825	46.503	0.9951	46.555	46.276	47.271	0.052574					83	36	3	0	0	0	0.31039	1	10441	10441		7.9454	2.5427	1	2456200	+		27611	22115	15891	15892	34172	34172					0.0699826681113791
LTLPFCGPNV	10	Unmodified	_LTLPFCGPNV_					0	0	0		ENSG00000176253|ENST00000641904|OR4K13	ENSG00000176253|ENST00000641904|OR4K13	ENSG00000176253|ENST00000641904|OR4K13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2988891601562	2	530.778428	1059.5423	0.61018	0.00032387	0.42569	0.00022595	1.0359	0.00054982	531.2798274120015	90.448	0.89539	90.448	90.003	90.899	0.00039673					87	67	2	0	0	0	0.30586	1	24038	24038		19.257	2.3147	1	288460			27612	6914	15892	15893	34173	34173					0.014912847139157748
LTLPPKRYK	9	Unmodified	_LTLPPKRYK_					0	0	0			REV__ENST00000361193.7_2_17:78226975-78227197:+|nuORF	REV__ENST00000361193.7_2_17:78226975-78227197:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7881469726562	2	558.350409	1114.68626	0.75123	0.00041945	-0.64348	-0.00035929	0.10774	6.0159E-05	558.3502266262602	50.733	0.43373	50.733	50.489	50.922	0					37	15	3	0	0	0	0.25938	1	11716	11716		1.8442	0	1	817380	+		27613	20277	15893	15894	34174	34174					0.1335087453635424
LTLPRESCSPP	11	Unmodified	_LTLPRESCSPP_					0	0	0			REV__ENST00000489924.1_1_5:142513552-142526947:+|nuORF	REV__ENST00000489924.1_1_5:142513552-142526947:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.0450439453125	2	600.308081	1198.60161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.84	1	112.84	112.34	113.34	0								0	0	0	0.38126	1	29316	29316		1.1933	0.50296	1		+		27614	16310	15894	15895	34175	34175					0.010251359374478852
LTLPRVAWT	9	Unmodified	_LTLPRVAWT_					0	0	0			REV__ENSG00000167757|ENST00000453757|KLK11	REV__ENSG00000167757|ENST00000453757|KLK11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8150024414062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.52	1	115.54	115.04	116.04	0.018738								0	0	0	0.25858	1	30001	30001		3.5965	0.31518	1		+		27615	17409	15895	15896	34176	34176					0.08718326093890028
LTLQREALD	9	Unmodified	_LTLQREALD_					0	0	0		ENST00000586860.1_1_19:44506809-44506971:-|nuORF	ENST00000586860.1_1_19:44506809-44506971:-|nuORF	ENST00000586860.1_1_19:44506809-44506971:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.322509765625	2	529.795663	1057.57677	0.31006	0.00016427	0.38486	0.0002039	0.69492	0.00036817	529.7959680919062	22.597	0.66017	22.597	22.36	23.021	0					34	22	2	0	0	0	0.10135	1	3137	3137		43.858	9.4566	1	209850			27616	12125	15896	15897	34177	34177					0.05028824126384279
LTLQREALD	9	Unmodified	_LTLQREALD_					0	0	0		ENST00000586860.1_1_19:44506809-44506971:-|nuORF	ENST00000586860.1_1_19:44506809-44506971:-|nuORF	ENST00000586860.1_1_19:44506809-44506971:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3222045898438	2	529.795663	1057.57677	0.20129	0.00010664	0.62928	0.00033339	0.83057	0.00044003	529.7961363477519	22.721	0.56344	22.633	22.403	22.967	-0.087608					44	19	3	0	0	0	0.13898	1	3203	3203		36.127	12.106	1	254090			27617	12125	15896	15897	34178	34178					0.05028824126384279
LTLQREALD	9	Unmodified	_LTLQREALD_					0	0	0		ENST00000586860.1_1_19:44506809-44506971:-|nuORF	ENST00000586860.1_1_19:44506809-44506971:-|nuORF	ENST00000586860.1_1_19:44506809-44506971:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3222045898438	2	529.795663	1057.57677	0.32804	0.00017379	0.37094	0.00019652	0.69898	0.00037032	529.7960085796238	22.698	0.47966	22.653	22.471	22.951	-0.044867					38	16	3	0	0	0	0.20167	1	3188	3188		29.082	5.061	1	225880			27618	12125	15896	15897	34179	34179					0.05028824126384279
LTLRMLFA	8	Unmodified	_LTLRMLFA_					0	0	0		ENST00000423031.1_1_2:145780751-145780790:+|nuORF	ENST00000423031.1_1_2:145780751-145780790:+|nuORF	ENST00000423031.1_1_2:145780751-145780790:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7713623046875	2	482.786056	963.557558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.24	1	69.217	68.717	69.717	-0.022087								0	0	0	0.33122	1	17473	17473		23.148	0	1				27619	10386	15897	15898	34180	34180					0.07432196301772365
LTLSDRFIF	9	Unmodified	_LTLSDRFIF_					0	0	0			REV__nc|ENSG00000204361|Q96DL1-3|NXPE2	REV__nc|ENSG00000204361|Q96DL1-3|NXPE2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.297119140625	2	556.310949	1110.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.23	1	101.23	100.73	101.73	0								0	0	0	0.24715	1	26994	26994		7.2892	0.56607	1		+		27620	23167	15898	15899	34181	34181					0.05646602511410492
LTLSFHNFRD	10	Unmodified	_LTLSFHNFRD_					0	0	0			REV__ENST00000589504.1_1_19:34856171-34859700:+|nuORF	REV__ENST00000589504.1_1_19:34856171-34859700:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.3192138671875	2	625.319837	1248.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.63	1	105.63	105.13	106.13	-0.0027847								0	0	0	0.37869	1	27978	27978		2.7352	0.23671	1		+		27621	14443	15899	15900	34182	34182					0.010753177662763846
LTLSPEKHRD	10	Unmodified	_LTLSPEKHRD_					0	0	0		ENST00000259253.10_1_2:128927902-128928794:+|nuORF	ENST00000259253.10_1_2:128927902-128928794:+|nuORF	ENST00000259253.10_1_2:128927902-128928794:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.32568359375	2	598.325119	1194.63569	0.17854	0.00010683	0.70368	0.00042103	0.88223	0.00052786	598.3255440809098	96.994	0.55444	96.994	96.816	97.37	0					84	51	3	0	0	0	0.41168	1	25978	25978		1.3295	0	1	102720			27622	8952	15900	15901	34183	34183					0.046153004207099
LTLTHSKLQRA	11	Unmodified	_LTLTHSKLQRA_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3778686523438	2	634.377686	1266.74082	-0.064473	-4.09E-05	-0.1445	-9.1668E-05	-0.20897	-0.00013257	634.3780256978243	111.46	1.0181	111.46	111.03	112.05	0					188	138	2	0	0	0	0.47649	5	29018	29018;29030;29032;29093;29124		1.1933	0.12188	1	196170			27623	2110	15901	15902	34184;34185;34186;34187;34188	34184					0.11811841617145546
LTLTHSKLQRA	11	Unmodified	_LTLTHSKLQRA_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3775024414062	2	634.377686	1266.74082	0.21813	0.00013838	-0.27728	-0.0001759	-0.059152	-3.7525E-05	634.3778279324298	111.28	0.45686	111.27	111.01	111.47	-0.013939					94	68	2	0	0	0	0.47649	1	28987	28987		1.1933	0.12188	1	307600			27624	2110	15901	15902	34189	34189					0.11811841617145546
LTLTHSKLQRA	11	Unmodified	_LTLTHSKLQRA_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.37841796875	2	634.377686	1266.74082	0.46564	0.00029539	-0.30836	-0.00019561	0.15728	9.9775E-05	634.3777273387699	111.49	0.77818	111.5	111.37	112.14	0.01152					197	98	3	0	0	0	0.47649	4	29034	29034;29062;29105;29145		1.1933	0.12188	1	308080			27625	2110	15901	15902	34190;34191;34192;34193	34190					0.11811841617145546
LTLWAAGDLL	10	Unmodified	_LTLWAAGDLL_					0	0	0			REV__nc|ENSG00000149485|O60427-2|FADS1	REV__nc|ENSG00000149485|O60427-2|FADS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.29296875	2	536.8055	1071.59645	0.47208	0.00025342	0.15954	8.5642E-05	0.63162	0.00033906	536.8055886688268	67.518	1.0132	67.596	67.296	68.31	0.078041					99	35	5	0	0	0	0.15638	1	17057	17057		37.974	3.5723	1	3124000	+		27626	16468	15902	15903	34194	34194					0.06351200137146407
LTLWSTVL	8	Unmodified	_LTLWSTVL_					0	0	0		nc|ENSG00000096996|P42701-2|IL12RB1;ENSG00000096996|ENST00000593993|IL12RB1	nc|ENSG00000096996|P42701-2|IL12RB1	nc|ENSG00000096996|P42701-2|IL12RB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7760925292969	2	466.776211	931.537869	-0.24373	-0.00011377	0.29252	0.00013654	0.048789	2.2774E-05	466.7762721910262	75.968	1.6564	75.968	75.012	76.668	0					139	59	4	0	0	0	0.41097	1	19627	19627		18.135	0	1	2454400			27627	1471	15903	15904	34195	34195					0.06936143562666075
LTLYFYYKFRT	11	Unmodified	_LTLYFYYKFRT_					0	0	0		nc|ENSG00000040487|Q6ZP29-2|SLC66A1;nc|ENSG00000040487|Q6ZP29-3|SLC66A1;ENSG00000040487|ENST00000375153|SLC66A1	nc|ENSG00000040487|Q6ZP29-2|SLC66A1	nc|ENSG00000040487|Q6ZP29-2|SLC66A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2771301269531	3	505.606255	1513.79694	0.15295	7.7331E-05	-1.9558	-0.00098885	-1.8028	-0.00091152	505.93952524859907	49.006	0.38803	49.038	48.852	49.24	0.032043					20	13	2	0	0	0	0.33303	1	11309	11309		1.1098	0	1	287940			27628	602	15904	15905	34196	34196					0.06059049733903521
LTLYQYKTCPF	11	Unmodified	_LTLYQYKTCPF_					0	0	0		ENST00000277462.9_1_9:130887138-130890631:-|nuORF;ENST00000474124.5_1_9:130886092-130889945:-|nuORF;ENSG00000148334|ENST00000338961|PTGES2	ENST00000277462.9_1_9:130887138-130890631:-|nuORF	ENST00000277462.9_1_9:130887138-130890631:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.768310546875	3	459.568813	1375.68461	-0.059037	-2.7131E-05	0.047103	2.1647E-05	-0.011934	-5.4845E-06	459.9030995770362	59.471	0.31953	59.471	59.241	59.56	0					17	10	2	0	0	0	0.3322	1	14490	14490		4.7159	4.7159	1	167970			27629	4803	15905	15906	34197	34197					0.01179452665428471
LTMAFMKEF	9	Unmodified	_LTMAFMKEF_					0	0	0			REV__ENSG00000123338|ENST00000293373|NCKAP1L	REV__ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.7896118164062	2	559.274664	1116.53477	0.33212	0.00018575	-0.13828	-7.7335E-05	0.19385	0.00010841	559.2747196326253	17.161	0.39586	17.1	16.784	17.18	-0.060429					23	14	2	0	0	0	0.25622	1	1567	1567		7.2892	0	1	37756	+		27630	15185	15906	15907	34198	34198					-0.01883190878015739
LTMGQLYEK	9	Oxidation (M)	_LTM(Oxidation (M))GQLYEK_		LTM(1)GQLYEK		LTM(100)GQLYEK	0	0	1		ENSG00000034713|ENST00000037243|GABARAPL2	ENSG00000034713|ENST00000037243|GABARAPL2	ENSG00000034713|ENST00000037243|GABARAPL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7786254882812	2	549.778625	1097.5427	0.56608	0.00031122	-0.14865	-8.1726E-05	0.41743	0.00022949	549.7785109020031	29.659	0.70979	29.659	29.324	30.034	0					62	24	3	0	0	0	0.0027197	1	5339	5339		104.48	58.785	1	612990			27631	570	15907	15908	34199	34199		62			-0.0021734035690315068
LTMGQLYEK	9	Oxidation (M)	_LTM(Oxidation (M))GQLYEK_		LTM(1)GQLYEK		LTM(91)GQLYEK	0	0	1		ENSG00000034713|ENST00000037243|GABARAPL2	ENSG00000034713|ENST00000037243|GABARAPL2	ENSG00000034713|ENST00000037243|GABARAPL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7787475585938	2	549.778625	1097.5427	0.50497	0.00027762	-0.0041916	-2.3045E-06	0.50078	0.00027532	549.7785314401308	29.562	0.75964	29.574	29.272	30.032	0.012266					67	25	4	0	0	0	0.0044119	2	5326	5274;5326		91.085	47.312	1	655520			27632	570	15907	15908	34200;34201	34201		62			-0.0021734035690315068
LTMGQLYEK	9	Oxidation (M)	_LTM(Oxidation (M))GQLYEK_		LTM(1)GQLYEK		LTM(100)GQLYEK	0	0	1		ENSG00000034713|ENST00000037243|GABARAPL2	ENSG00000034713|ENST00000037243|GABARAPL2	ENSG00000034713|ENST00000037243|GABARAPL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.779052734375	2	549.778625	1097.5427	0.22058	0.00012127	0.22224	0.00012218	0.44283	0.00024346	549.7787013899527	29.606	0.64477	29.619	29.329	29.974	0.013475					65	21	4	0	0	0	0.0031966	2	5287	5287;5339		100.71	56.936	1	670110			27633	570	15907	15908	34202;34203	34202		62			-0.0021734035690315068
LTMGQSKHI	9	Unmodified	_LTMGQSKHI_					0	0	0			REV__nc|ENSG00000140451|Q9H611-4|PIF1	REV__nc|ENSG00000140451|Q9H611-4|PIF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.272216796875	2	507.773677	1013.5328	0.17536	8.9042E-05	-0.27176	-0.00013799	-0.096406	-4.8952E-05	507.77353044933795	23.667	0.56361	23.594	23.257	23.821	-0.072557					51	19	3	0	0	0	0.259	1	3438	3438		5.2969	5.2969	1	247470	+		27634	16033	15908	15909	34204	34204					0.02657516428382678
LTMHRIVI	8	Unmodified	_LTMHRIVI_					0	0	0		nc|ENSG00000172575|O95267-2|RASGRP1;ENSG00000172575|ENST00000310803|RASGRP1;nc|ENSG00000172575|O95267-4|RASGRP1;nc|ENSG00000172575|O95267-5|RASGRP1;nc|ENSG00000172575|O95267-3|RASGRP1	nc|ENSG00000172575|O95267-2|RASGRP1	nc|ENSG00000172575|O95267-2|RASGRP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.3161315917969	2	491.796955	981.579357	0.26634	0.00013099	-1.407	-0.00069197	-1.1407	-0.00056098	491.79583769095046	43.063	1.3144	43.149	42.657	43.971	0.085621					64	48	2	0	0	0	0.34039	1	9474	9474		15.847	10.087	1	357650			27635	6649	15909	15910	34205	34205					0.08783001050335315
LTMLYQVKKG	10	Unmodified	_LTMLYQVKKG_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;MSH2|p.K871Nfs*24|1|0.04|ENSG00000095002|chr2:47480849-47480850|-/TGTAAATG|frameshift_variant;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.3718872070312	2	590.841559	1179.66857	0.43711	0.00025826	-0.65172	-0.00038506	-0.21461	-0.0001268	590.8409770084594	38.347	0.40844	38.438	38.264	38.673	0.090881					26	14	2	0	0	0	0.31889	1	7951	7951		6.2058	6.2058	1	204160			27636	1444	15910	15911	34206	34206					0.08591791219214429
LTMNDIDAF	9	Unmodified	_LTMNDIDAF_					0	0	0		nc|ENSG00000138029|P55084-2|HADHB;ENSG00000138029|ENST00000317799|HADHB	nc|ENSG00000138029|P55084-2|HADHB	nc|ENSG00000138029|P55084-2|HADHB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.771484375	2	520.241875	1038.4692	0.34408	0.00017901	-0.078242	-4.0705E-05	0.26584	0.0001383	520.2418423894743	62.011	0.53736	62.011	61.755	62.292	0					25	19	2	0	0	0	0.23783	1	15359	15359		4.3292	0	1	193630			27637	4105	15911	15912	34207	34207					-0.048498887993673634
LTMSSTLS	8	Unmodified	_LTMSSTLS_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.2227478027344	2	420.212586	838.410619	0.38696	0.0001626	1.532	0.00064378	1.919	0.00080638	420.2128293148658	77.478	0.66672	77.534	77.258	77.924	0.055412					51	23	3	0	0	0	0.4419	1	20038	20038		8.5933	0	1	447630	+		27638	18449	15912	15913	34208	34208					-0.015049453738242846
LTNGRPGIL	9	Unmodified	_LTNGRPGIL_					0	0	0			REV__nc|ENSG00000168066|Q15637-4|SF1	REV__nc|ENSG00000168066|Q15637-4|SF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.7947998046875	2	470.782359	939.550165	-0.10579	-4.9804E-05	-1.0119	-0.00047638	-1.1177	-0.00052619	470.78205026593093	41.264	0.25627	41.264	41.125	41.382	0					14	9	2	0	0	0	0.24311	1	8839	8839		3.9444	0	1	125010	+		27639	17436	15913	15914	34209	34209					0.07797180025715988
LTNIQRAHRPI	11	Unmodified	_LTNIQRAHRPI_					0	0	0			REV__nc|ENSG00000106829|Q04727-2|TLE4;REV__nc|ENSG00000140332|Q04726-2|TLE3	REV__nc|ENSG00000106829|Q04727-2|TLE4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.1974182128906	3	440.261594	1317.76295	-0.028351	-1.2482E-05	-0.39882	-0.00017558	-0.42717	-0.00018807	440.26142905444107	23.726	0.66461	23.726	23.448	24.113	0					54	22	4	0	0	0	0.33207	1	3529	3529		5.5233	0	1	108660	+		27640	14537;16029	15914	15915	34210	34210					0.11678066085551109
LTNLKDRVK	9	Unmodified	_LTNLKDRVK_					0	0	0		ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3011474609375	2	543.835123	1085.65569	0.38029	0.00020682	0.26536	0.00014431	0.64566	0.00035113	543.8352613349069	16.682	0.25838	16.682	16.461	16.72	0					14	8	2	0	0	0	0.25988	1	1371	1371		3.9444	0.3479	1	69048			27641	7699	15915	15916	34211	34211					0.11629096151318663
LTNLKDRVK	9	Unmodified	_LTNLKDRVK_					0	0	0		ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	543.835123	1085.65569	0.36759	0.00019991	0.026573	1.4451E-05	0.39417	0.00021436	543.835236880018	16.739	0.27297	16.625	16.476	16.749	-0.11434	-0.024802	-0.00015098	NaN	3.9444	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50390			27642	7699	15915	15916							0.11629096151318663
LTNLKDRVK	9	Unmodified	_LTNLKDRVK_					0	0	0		ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.835123	1085.65569	0.58888	0.00032025	0.024817	1.3497E-05	0.6137	0.00033375	543.8349829777678	16.705	0.31209	16.642	16.442	16.754	-0.062532	-0.0074926	-0.00015289	NaN	3.9444	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50222			27643	7699	15915	15916							0.11629096151318663
LTNLLRQLDF	10	Unmodified	_LTNLLRQLDF_					0	0	0		nc|ENSG00000172175|Q9UDY8-2|MALT1;ENSG00000172175|ENST00000649217|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	nc|ENSG00000172175|Q9UDY8-2|MALT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.5715637207031	3	411.571434	1231.69247	0.26959	0.00011095	-0.25386	-0.00010448	0.015732	6.4747E-06	411.57139747867046	32.679	0.97474	32.734	32.395	33.369	0.055309					95	34	4	0	0	0	0.38062	1	6337	6337		7.0371	0	1	782960			27644	6608	15916	15917	34212	34212					0.0858934797722668
LTNLVSIIF	9	Unmodified	_LTNLVSIIF_					0	0	0		nc|ENSG00000131620|Q5XXA6-3|ANO1;nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1	nc|ENSG00000131620|Q5XXA6-3|ANO1	nc|ENSG00000131620|Q5XXA6-3|ANO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7994384765625	2	510.310418	1018.60628	0.3708	0.00018922	0.94604	0.00048278	1.3168	0.000672	510.3109399714783	68.557	0.43266	68.557	68.275	68.708	0					21	15	2	0	0	0	0.1939	1	17304	17304		24.021	0	1	261420			27645	3576	15917	15918	34213	34213					0.09772388142528143
LTNQKLYL	8	Unmodified	_LTNQKLYL_					0	0	0		ENSG00000206150|ENST00000382951|RNASE13	ENSG00000206150|ENST00000382951|RNASE13	ENSG00000206150|ENST00000382951|RNASE13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7719421386719	2	496.792392	991.570232	0.18294	9.0884E-05	-0.25671	-0.00012753	-0.073764	-3.6645E-05	496.79239333285676	15.77	0.42324	15.77	15.557	15.981	0					32	14	3	0	0	0	0.34294	1	1118	1118		7.2892	0.56607	1	83146			27646	8315	15918	15919	34214	34214					0.07410930965647822
LTNRDSTI	8	Unmodified	_LTNRDSTI_					0	0	0		ENST00000453574.1_1_X:100673300-100674112:+|nuORF;ENST00000431677.1_1_X:100673784-100702742:+|nuORF	ENST00000453574.1_1_X:100673300-100674112:+|nuORF	ENST00000453574.1_1_X:100673300-100674112:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.2458190917969	2	460.245806	918.47706	-0.059195	-2.7244E-05	0.22079	0.00010162	0.1616	7.4374E-05	460.24576725927795	18.061	0.93594	18.061	17.802	18.738	0					90	31	5	0	0	0	0.11046	1	1814	1814		58.679	0	1	696600			27647	10475	15919	15920	34215	34215					0.014560065124328503
LTNYTDDYF	9	Unmodified	_LTNYTDDYF_					0	0	0			REV__ENST00000531047.1_1_11:28106151-28106310:-|nuORF	REV__ENST00000531047.1_1_11:28106151-28106310:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.7332763671875	2	576.248212	1150.48187	0.22401	0.00012908	-1.2692	-0.0007314	-1.0452	-0.00060231	576.2479532472223	68.327	0.31177	68.327	68.124	68.436	0					20	11	2	0	0	0	0.16283	1	17192	17192		29.082	0	1	239840	+		27648	15125	15920	15921	34216	34216					-0.08735154135479206
LTNYTDDYF	9	Unmodified	_LTNYTDDYF_					0	0	0			REV__ENST00000531047.1_1_11:28106151-28106310:-|nuORF	REV__ENST00000531047.1_1_11:28106151-28106310:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.7337646484375	2	576.248212	1150.48187	0.28421	0.00016377	-1.2117	-0.00069827	-0.92754	-0.0005345	576.247768910105	68.23	0.60491	68.302	68.044	68.649	0.071938					31	21	2	0	0	0	0.16283	2	17221	17175;17221		29.082	0	1	254900	+		27649	15125	15920	15921	34217;34218	34218					-0.08735154135479206
LTNYTDDYF	9	Unmodified	_LTNYTDDYF_					0	0	0			REV__ENST00000531047.1_1_11:28106151-28106310:-|nuORF	REV__ENST00000531047.1_1_11:28106151-28106310:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	576.248212	1150.48187	0.22401	0.00012908	-1.2692	-0.0007314	-1.0452	-0.00060231	576.2479532472223	68.327	0.31177	68.327	68.124	68.436	0	0.012144	-4.7311E-05	NaN	29.082	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239840	+		27650	15125	15920	15921							-0.08735154135479206
LTNYYQSF	8	Unmodified	_LTNYYQSF_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;ENST00000547500.1_1_12:54891564-54894436:+|nuORF	ENSG00000123338|ENST00000293373|NCKAP1L;ENST00000547500.1_1_12:54891564-54894436:+|nuORF	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8037109375	2	518.242732	1034.47091	0.3668	0.00019009	-0.2316	-0.00012003	0.1352	7.0065E-05	518.2425308079569	58.786	0.5382	58.878	58.645	59.183	0.091305					31	18	2	0	0	0	0.31617	1	14291	14291		26.884	0	1	339040			27651	3097;11770	15921	15922	34219	34219					-0.044945117190763995
LTNYYQSF	8	Unmodified	_LTNYYQSF_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;ENST00000547500.1_1_12:54891564-54894436:+|nuORF	ENSG00000123338|ENST00000293373|NCKAP1L;ENST00000547500.1_1_12:54891564-54894436:+|nuORF	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8034057617188	2	518.242732	1034.47091	0.36838	0.00019091	0.0035696	1.8499E-06	0.37195	0.00019276	518.2426448007176	58.967	0.44481	58.953	58.777	59.222	-0.014267					27	15	2	0	0	0	0.29634	1	14304	14304		26.884	0	1	361550			27652	3097;11770	15921	15922	34220	34220					-0.044945117190763995
LTPAASEQSR	10	Unmodified	_LTPAASEQSR_					0	0	0			REV__ENSG00000215182|ENST00000621226|MUC5AC	REV__ENSG00000215182|ENST00000621226|MUC5AC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.8154296875	2	530.275095	1058.53564	0.46288	0.00024545	-2.0318	-0.0010774	-1.5689	-0.00083195	530.2741801620626	63.067	0.43272	63.163	62.957	63.39	0.095722					22	15	2	0	0	0	0.29038	1	15528	15528		18.146	1.0598	1	238970	+		27653	19075	15922	15923	34221	34221					0.008710630869018132
LTPAHMVRRFP	11	Unmodified	_LTPAHMVRRFP_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7679138183594	3	442.248408	1323.72339	0.14593	6.4538E-05	-3.6655	-0.0016211	-3.5195	-0.0015565	442.2479480154108	42.83	0.41282	42.83	42.595	43.008	0					18	14	2	0	0	0	0.33094	1	9286	9286		4.7159	2.0847	1	195420	+		27654	14322	15923	15924	34222	34222					0.07448222810467087
LTPARQAL	8	Unmodified	_LTPARQAL_					0	0	0		ENST00000466645.5_1_22:41982407-41985761:-|nuORF	ENST00000466645.5_1_22:41982407-41985761:-|nuORF	ENST00000466645.5_1_22:41982407-41985761:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.825927734375	2	435.263802	868.513051	0.052817	2.2989E-05	-0.13853	-6.0298E-05	-0.085715	-3.7309E-05	435.263642342354	42.284	0.42105	42.369	42.093	42.514	0.085197					33	14	3	0	0	0	0.34092	1	9119	9119		8.5933	0	1	436850			27655	10815	15924	15925	34223	34223					0.07353508479945958
LTPEEFVGDY	10	Unmodified	_LTPEEFVGDY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.2717895507812	2	585.271687	1168.52882	0.57121	0.00033431	-0.59983	-0.00035106	-0.028616	-1.6748E-05	585.271661917378	32.373	0.97313	32.373	31.982	32.955	0					94	34	4	0	0	0	0.1715	1	6172	6172		36.127	7.0454	1	701030			27656	1234	15925	15926	34224	34224					-0.048702945843160705
LTPEEFVGDY	10	Unmodified	_LTPEEFVGDY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.2721557617188	2	585.271687	1168.52882	0.55305	0.00032368	-0.59685	-0.00034932	-0.043801	-2.5635E-05	585.271622218396	32.256	1.0556	32.311	32.007	33.063	0.055309					96	37	4	0	0	0	0.1715	1	6200	6200		36.127	5.4905	1	851760			27657	1234	15925	15926	34225	34225					-0.048702945843160705
LTPEEFVGDY	10	Unmodified	_LTPEEFVGDY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.2720947265625	2	585.271687	1168.52882	0.37691	0.00022059	-0.59604	-0.00034884	-0.21913	-0.00012825	585.2716889799193	32.306	0.99781	32.36	32.045	33.042	0.054375					99	35	4	0	0	0	0.11922	2	6196	6142;6196		43.858	14.777	1	722030			27658	1234	15925	15926	34226;34227	34227					-0.048702945843160705
LTPEEFVGDY	10	Unmodified	_LTPEEFVGDY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	585.271687	1168.52882	0.55305	0.00032368	-0.59685	-0.00034932	-0.043801	-2.5635E-05	585.271622218396	32.256	1.0556	32.311	32.007	33.063	0.055309	-0.036773	1.0192E-06	NaN	43.858	96	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	851760			27659	1234	15925	15926							-0.048702945843160705
LTPEIQYL	8	Unmodified	_LTPEIQYL_					0	0	0		ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.77154541015625	2	488.771126	975.527698	0.095114	4.6489E-05	1.4094	0.00068888	1.5045	0.00073537	488.77132745865794	18.972	1.1325	18.972	18.299	19.431	0					83	39	3	0	0	0	0.4419	1	2137	2137		8.5933	0	1	256160			27660	3352	15926	15927	34228	34228					0.038955358374209936
LTPEIQYL	8	Unmodified	_LTPEIQYL_					0	0	0		ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	488.771126	975.527698	0.13885	6.7864E-05	1.4696	0.0007183	1.6084	0.00078616	488.7712595213955	19.111	1.046	18.993	18.414	19.46	-0.11739	-0.00084424	1.1531E-05	NaN	8.5933	96	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279250			27661	3352	15926	15927							0.038955358374209936
LTPEQWRSR	9	Unmodified	_LTPEQWRSR_					0	0	0		ENST00000430357.4_1_22:23980813-23981020:-|nuORF;ENSG00000128322|ENST00000330377|IGLL1	ENST00000430357.4_1_22:23980813-23981020:-|nuORF	ENST00000430357.4_1_22:23980813-23981020:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3040161132812	2	586.812179	1171.60981	0.098685	5.791E-05	0.3863	0.00022668	0.48498	0.00028459	586.8122307352422	18.716	0.34684	18.599	18.387	18.734	-0.11739					18	11	2	0	0	0	0.26168	1	2023	2023		1.8442	0	1	48138			27662	3364	15927	15928	34229	34229					0.030864509690900377
LTPEQWRSR	9	Unmodified	_LTPEQWRSR_					0	0	0		ENST00000430357.4_1_22:23980813-23981020:-|nuORF;ENSG00000128322|ENST00000330377|IGLL1	ENST00000430357.4_1_22:23980813-23981020:-|nuORF	ENST00000430357.4_1_22:23980813-23981020:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	586.812179	1171.60981	-0.0069423	-4.0738E-06	-0.27081	-0.00015892	-0.27776	-0.00016299	586.8120227654215	18.727	0.3333	18.669	18.483	18.816	-0.058174	0.076907	-0.00068018	NaN	1.8442	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45370			27663	3364	15927	15928							0.030864509690900377
LTPESPNL	8	Unmodified	_LTPESPNL_					0	0	0		nc|ENSG00000109819|Q9UBK2-2|PPARGC1A;nc|ENSG00000109819|Q9UBK2-6|PPARGC1A	nc|ENSG00000109819|Q9UBK2-2|PPARGC1A	nc|ENSG00000109819|Q9UBK2-2|PPARGC1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.5760803222656	2	435.732	869.449448	0.039869	1.7372E-05	-0.33115	-0.00014429	-0.29128	-0.00012692	435.7318432619844	38.37	1.6935	38.461	37.475	39.168	0.090881					91	61	2	0	0	0	0.33245	1	7915	7915		13.508	0.97634	1	215610			27664	12645	15928	15929	34230	34230					0.009501032521825437
LTPFDAKAK	9	Unmodified	_LTPFDAKAK_					0	0	0			REV__ENST00000582842.1_1_17:37561883-37562066:+|nuORF	REV__ENST00000582842.1_1_17:37561883-37562066:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2720947265625	2	495.784567	989.554582	0.67369	0.000334	-0.11496	-5.6997E-05	0.55872	0.00027701	495.78452494365035	45.533	1.0726	45.533	45.121	46.194	0					119	38	4	0	0	0	0.26612	1	10106	10106		13.906	0	1	7338200	+		27665	22494	15929	15930	34231	34231					0.059386444485994616
LTPGKAIL	8	Unmodified	_LTPGKAIL_					0	0	0		ENST00000370214.8_1_1:94983241-94983295:+|nuORF	ENST00000370214.8_1_1:94983241-94983295:+|nuORF	ENST00000370214.8_1_1:94983241-94983295:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2178955078125	2	406.765646	811.516739	-0.19832	-8.0669E-05	0.13036	5.3024E-05	-0.067962	-2.7645E-05	406.7656449309806	42.675	0.59607	42.76	42.462	43.058	0.085197					30	21	2	0	0	0	0.31934	1	9348	9348		12.532	3.1841	1	231860			27666	9792	15930	15931	34232	34232					0.10344178253785685
LTPGLTNAK	9	Unmodified	_LTPGLTNAK_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.1643371582031	2	457.768917	913.523281	0.28113	0.00012869	-1.4558	-0.00066641	-1.1746	-0.00053772	457.7683526934588	26.487	0.43381	26.464	26.266	26.7	-0.022236					25	14	2	0	0	0	0.22061	1	4333	4333		24.021	2.4836	1	114280	+		27667	15342	15931	15932	34233	34233					0.06306071414519465
LTPHILRSQL	10	Unmodified	_LTPHILRSQL_					0	0	0			REV__ENST00000416860.2_2_1:2485669-2486552:-|nuORF	REV__ENST00000416860.2_2_1:2485669-2486552:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3428955078125	2	589.356222	1176.69789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.501	1	98.562	98.062	99.062	0.061516								0	0	0	0.38187	1	26364	26364		1.3295	0.13619	1		+		27668	20824	15932	15933	34234	34234					0.11661071559706215
LTPIVPSNS	9	Unmodified	_LTPIVPSNS_					0	0	0		nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.794921875	2	464.260925	926.507297	0.23946	0.00011117	-1.31	-0.00060817	-1.0705	-0.000497	464.2602130036978	54.22	0.13483	54.22	54.105	54.24	0					6	4	2	0	0	0	0.22596	1	12827	12827		21.747	0	1	79593			27669	13023	15933	15934	34235	34235					0.04110365177609765
LTPLMTLVQRR	11	Unmodified	_LTPLMTLVQRR_					0	0	0			REV__ENST00000543937.5_2_11:71760491-71780907:-|nuORF	REV__ENST00000543937.5_2_11:71760491-71780907:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.2759094238281	3	443.267468	1326.78058	0.38932	0.00017257	-1.1366	-0.00050384	-0.74732	-0.00033126	443.267040861065	87.635	1.2222	87.635	87.093	88.315	0					156	58	4	0	0	0	0.3331	1	22964	22964		2.2527	2.2527	1	795370	+		27670	22151	15934	15935	34236	34236					0.13025645296193034
LTPLVHHSDR	10	Unmodified	_LTPLVHHSDR_					0	0	0			REV__ENST00000290552.7_1_16:55358927-55360360:+|nuORF	REV__ENST00000290552.7_1_16:55358927-55360360:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.2975463867188	2	587.820004	1173.62546	0.35545	0.00020894	-3.0626	-0.0018003	-2.7072	-0.0015913	587.8182388417468	29.774	0.32579	29.787	29.622	29.948	0.012266					14	10	2	0	0	0	0.31926	1	5398	5398		5.7319	0.97584	1	67282	+		27671	19751	15935	15936	34237	34237					0.04558737486127029
LTPPSWKIWL	10	Unmodified	_LTPPSWKIWL_					0	0	0			REV__ENST00000509934.1_1_5:35068382-35086329:-|nuORF	REV__ENST00000509934.1_1_5:35068382-35086329:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.8947448730469	3	414.241137	1239.70158	0.35162	0.00014566	2.5835	0.0010702	2.9351	0.0012158	414.241981453196	21.151	0.68458	21.098	20.886	21.571	-0.052912					57	23	3	0	0	0	0.31555	1	2739	2739		9.7643	3.9808	1	180050	+		27672	14810	15936	15937	34238	34238					0.09131741333567334
LTPPVITL	8	Unmodified	_LTPPVITL_					0	0	0			REV__ENST00000529330.1_1_11:65426254-65427166:-|nuORF	REV__ENST00000529330.1_1_11:65426254-65427166:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.2734069824219	2	427.273304	852.532055	-0.129	-5.5117E-05	0.21316	9.1079E-05	0.084168	3.5963E-05	427.2732766168274	69.912	1.0887	69.912	69.485	70.573	0					96	39	3	0	0	0	0.25425	1	17754	17754		36.044	5.8194	1	603560	+		27673	21995	15937	15938	34239	34239					0.09989045050997447
LTPPVITL	8	Unmodified	_LTPPVITL_					0	0	0			REV__ENST00000529330.1_1_11:65426254-65427166:-|nuORF	REV__ENST00000529330.1_1_11:65426254-65427166:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.27313232421875	2	427.273304	852.532055	-0.16506	-7.0524E-05	0.3406	0.00014553	0.17554	7.5004E-05	427.27328831170286	69.884	1.0924	69.95	69.459	70.552	0.06604					87	38	3	0	0	0	0.19197	1	17752	17752		44.407	6.2558	1	471840	+		27674	21995	15937	15938	34240	34240					0.09989045050997447
LTPPVLTGLSL	11	Unmodified	_LTPPVLTGLSL_					0	0	0		ENST00000591541.2_1_18:43319470-43329913:+|nuORF	ENST00000591541.2_1_18:43319470-43329913:+|nuORF	ENST00000591541.2_1_18:43319470-43329913:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.798583984375	2	555.842082	1109.66961	0.12072	6.7103E-05	-1.7069	-0.00094877	-1.5862	-0.00088167	555.8409197468923	33.941	0.38842	34.008	33.739	34.127	0.066704					21	13	2	0	0	0	0.32736	1	6601	6601		12.241	0	1	141230			27675	12187	15938	15939	34241	34241					0.11916328859751957
LTPPVVTYFA	10	Unmodified	_LTPPVVTYFA_					0	0	0			REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF	REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3084106445312	2	554.307875	1106.6012	0.097599	5.41E-05	0.63852	0.00035394	0.73612	0.00040804	554.3083550522585	31.402	0.60328	31.445	31.106	31.709	0.042366					44	21	3	0	0	0	0.38515	1	5852	5852		6.2058	0	1	418130	+		27676	18824	15939	15940	34242	34242					0.05216084279913957
LTPSADYKF	9	Unmodified	_LTPSADYKF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.8506469726562	2	521.266207	1040.51786	0.69285	0.00036116	-0.49681	-0.00025897	0.19604	0.00010219	521.265923841125	54.122	0.55036	54.122	53.884	54.435	0					42	19	3	0	0	0	0.23783	1	12871	12871		12.532	3.9383	1	579250			27677	5186	15940	15941	34243	34243					-0.0007765216796542518
LTPSADYKF	9	Unmodified	_LTPSADYKF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2896728515625	2	521.266207	1040.51786	0.48808	0.00025442	-0.44749	-0.00023326	0.04059	2.1158E-05	521.2658633850544	54.068	0.47697	54.131	53.876	54.353	0.063202					41	17	3	0	0	0	0.22596	1	12841	12841		15.847	0	1	433680			27678	5186	15940	15941	34244	34244					-0.0007765216796542518
LTQEWEDYRL	10	Unmodified	_LTQEWEDYRL_					0	0	0		ENSG00000160716|ENST00000368476|CHRNB2	ENSG00000160716|ENST00000368476|CHRNB2	ENSG00000160716|ENST00000368476|CHRNB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.55419921875	3	451.55422	1351.64083	-0.079101	-3.5718E-05	0.053491	2.4154E-05	-0.025609	-1.1564E-05	451.55421527752804	39.788	0.71645	39.788	39.51	40.226	0					76	25	4	0	0	0	0.36578	1	8447	8447		9.7643	0.52048	1	1308300			27679	5481	15941	15942	34245	34245					-0.02092440507340143
LTQEWEDYRL	10	Unmodified	_LTQEWEDYRL_					0	0	0		ENSG00000160716|ENST00000368476|CHRNB2	ENSG00000160716|ENST00000368476|CHRNB2	ENSG00000160716|ENST00000368476|CHRNB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.55419921875	3	451.55422	1351.64083	0.15378	6.9442E-05	-0.091872	-4.1485E-05	0.061913	2.7957E-05	451.55412230475577	39.555	0.69999	39.648	39.39	40.09	0.092674					75	24	4	0	0	0	0.36578	1	8334	8334		9.7643	0.52048	1	1373500			27680	5481	15941	15942	34246	34246					-0.02092440507340143
LTQEWEDYRL	10	Unmodified	_LTQEWEDYRL_					0	0	0		ENSG00000160716|ENST00000368476|CHRNB2	ENSG00000160716|ENST00000368476|CHRNB2	ENSG00000160716|ENST00000368476|CHRNB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.55413818359375	3	451.55422	1351.64083	0.17763	8.0208E-05	-0.13486	-6.0898E-05	0.042764	1.931E-05	451.55411041078327	39.568	0.66588	39.668	39.372	40.038	0.099407					71	23	4	0	0	0	0.34535	2	8371	8325;8371		13.519	0.66272	1	1557400			27681	5481	15941	15942	34247;34248	34248					-0.02092440507340143
LTQHPGPLF	9	Unmodified	_LTQHPGPLF_					0	0	0			REV__ENSG00000134716|ENST00000371204|CYP2J2;REV__ENST00000492633.5_1_1:60370173-60378128:-|nuORF	REV__ENST00000492633.5_1_1:60370173-60378128:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7844543457031	2	505.276909	1008.53927	0.38013	0.00019207	0.74035	0.00037408	1.1205	0.00056615	505.2773709197542	62.59	1.7544	62.59	62.213	63.967	0					92	64	2	0	0	0	0.21905	1	15865	15865		11.64	0	1	322430	+		27682	15694;21625	15942	15943	34249	34249					0.035337776514325014
LTQIAQKF	8	Unmodified	_LTQIAQKF_					0	0	0			REV__ENST00000409556.5_1_2:86705773-86709083:+|nuORF	REV__ENST00000409556.5_1_2:86705773-86709083:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.27130126953125	2	474.779285	947.544017	0.32178	0.00015277	0.10596	5.0308E-05	0.42774	0.00020308	474.7793837161364	48.941	1.0689	48.985	48.497	49.566	0.044891					60	38	2	0	0	0	0.32099	1	11362	11362		25.399	8.457	1	810480	+		27683	20762	15943	15944	34250	34250					0.06814661794192034
LTQKNMFL	8	Unmodified	_LTQKNMFL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2923278808594	2	497.773145	993.531738	0.47345	0.00023567	-2.2333	-0.0011117	-1.7598	-0.00087599	497.7721678204323	49.624	0.70889	49.624	49.292	50.001	0					38	25	2	0	0	0	0.32435	1	11555	11555		16.942	2.3606	1	415510			27684	1773	15944	15945	34251	34251					0.03471302059483605
LTQLEIEWKKV	11	Unmodified	_LTQLEIEWKKV_					0	0	0			REV__ENSG00000103942|ENST00000450735|HOMER2	REV__ENSG00000103942|ENST00000450735|HOMER2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2763671875	3	462.937894	1385.79185	0.26511	0.00012273	-0.14335	-6.6362E-05	0.12176	5.6366E-05	462.9378452058637	48.716	1.3841	48.76	48.156	49.54	0.044891					143	50	4	0	0	0	0.33236	1	11274	11274		1.1098	1.1098	1	5238100	+		27685	14388	15945	15946	34252	34252					0.114387458713054
LTQLKKQMIR	10	Unmodified	_LTQLKKQMIR_					0	0	0			REV__nc|ENSG00000139436|Q14161-9|GIT2	REV__nc|ENSG00000139436|Q14161-9|GIT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.9279479980469	3	420.260314	1257.75911	-0.24981	-0.00010499	-3.258	-0.0013692	-3.5078	-0.0014742	420.260177970079	35.473	0.31214	35.56	35.45	35.762	0.08625					15	10	2	0	0	0	0.31597	1	7157	7157		12.175	5.073	1	201080	+		27686	15984	15946	15947	34253	34253					0.14054260267471363
LTQLQRVL	8	Unmodified	_LTQLQRVL_					0	0	0			REV__ENSG00000068724|ENST00000319190|TTC7A	REV__ENSG00000068724|ENST00000319190|TTC7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2551574707031	2	485.805834	969.597115	0.15042	7.3073E-05	-0.22677	-0.00011016	-0.076349	-3.7091E-05	485.80571255983534	27.154	0.63261	27.154	26.841	27.474	0					39	21	2	0	0	0	0.31617	1	4656	4656		26.884	0	1	704400	+		27687	13704	15947	15948	34254	34254					0.11110039576851705
LTQNALVTL	9	Unmodified	_LTQNALVTL_					0	0	0			REV__nc|ENSG00000100095|Q9BYH1-2|SEZ6L	REV__nc|ENSG00000100095|Q9BYH1-2|SEZ6L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.799560546875	2	486.78985	971.565146	0.52105	0.00025364	1.1829	0.00057584	1.704	0.00082949	486.7916191349198	83.268	0.96069	83.268	82.874	83.835	0					75	36	3	0	0	0	0.24581	1	21873	21873		16.942	2.104	1	279470	+		27688	14159	15948	15949	34255	34255					0.07822627103041668
LTQQFPLK	8	Unmodified	_LTQQFPLK_					0	0	0		ENSG00000146966|ENST00000496613|DENND2A;nc|ENSG00000146966|Q9ULE3-2|DENND2A	ENSG00000146966|ENST00000496613|DENND2A	ENSG00000146966|ENST00000496613|DENND2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2503662109375	2	487.78711	973.559667	0.43157	0.00021052	-0.27527	-0.00013427	0.1563	7.6243E-05	487.7873905555274	51.496	1.4224	51.506	50.298	51.72	0.0095634					116	53	3	0	0	0	0.32537	1	12018	12018		18.146	0	1	2597700			27689	4741	15949	15950	34256	34256					0.07182948311242399
LTQVHPLLL	9	Unmodified	_LTQVHPLLL_					0	0	0		ENST00000278071.6_1_10:106073096-106073477:-|nuORF	ENST00000278071.6_1_10:106073096-106073477:-|nuORF	ENST00000278071.6_1_10:106073096-106073477:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8117065429688	2	517.32386	1032.63317	0.39408	0.00020387	-0.16146	-8.353E-05	0.23261	0.00012034	517.8252652674975	81.996	0.26582	81.996	81.844	82.11	0					13	9	2	0	0	0	0.24636	1	21406	21406		11.495	0	1	59238			27690	9106	15950	15951	34257	34257					0.11815496753729349
LTQVINKI	8	Unmodified	_LTQVINKI_					0	0	0		ENST00000504490.2_1_4:113277498-113277816:+|nuORF	ENST00000504490.2_1_4:113277498-113277816:+|nuORF	ENST00000504490.2_1_4:113277498-113277816:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.27593994140625	2	464.794935	927.575317	0.29451	0.00013689	-0.10549	-4.9033E-05	0.18901	8.7853E-05	464.79490609276553	50.011	0.59396	50.056	49.749	50.343	0.044891					29	22	2	0	0	0	0.33293	1	11514	11514		20.454	0	1	161810			27691	11299	15951	15952	34258	34258					0.1086323482828675
LTQVWNKL	8	Unmodified	_LTQVWNKL_					0	0	0			REV__nc|ENSG00000134900|P29144|TPP2	REV__nc|ENSG00000134900|P29144|TPP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7846374511719	2	501.292559	1000.57057	-0.1967	-9.8603E-05	0.63268	0.00031716	0.43599	0.00021856	501.29282993681556	35.351	0.3844	35.427	35.097	35.481	0.075306					31	13	3	0	0	0	0.20518	1	7070	7070		42.095	0	1	273240	+		27692	15708	15952	15953	34259	34259					0.07030350685522535
LTQVWNKL	8	Unmodified	_LTQVWNKL_					0	0	0			REV__nc|ENSG00000134900|P29144|TPP2	REV__nc|ENSG00000134900|P29144|TPP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.78466796875	2	501.292559	1000.57057	-0.44363	-0.00022239	0.88669	0.00044449	0.44306	0.0002221	501.29277947123956	35.199	0.40665	35.276	35.06	35.467	0.077377					30	14	3	0	0	0	0.30517	1	7053	7053		30.225	0	1	196240	+		27693	15708	15952	15953	34260	34260					0.07030350685522535
LTQWIRTI	8	Unmodified	_LTQWIRTI_					0	0	0		ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2	ENSG00000024048|ENST00000372901|UBR2	ENSG00000024048|ENST00000372901|UBR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.8038940429688	2	515.805834	1029.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.475	1	26.436	25.936	26.936	-0.038671								0	0	0	0.3229	1	4367	4367		25.399	0	1				27694	529	15953	15954	34261	34261					0.08350039576839663
LTRAPNIL	8	Unmodified	_LTRAPNIL_					0	0	0			REV__ENST00000520836.5_1_5:169174421-169268422:+|nuORF	REV__ENST00000520836.5_1_5:169174421-169268422:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.5992431640625	2	449.279452	896.544351	0.31231	0.00014031	-0.24001	-0.00010783	0.072302	3.2484E-05	449.27923726222724	43.639	0.31651	43.723	43.549	43.866	0.083992					16	11	2	0	0	0	0.33293	1	9599	9599		10.074	2.1638	1	234100	+		27695	21891	15954	15955	34262	34262					0.09194081514044683
LTRAPNIL	8	Unmodified	_LTRAPNIL_					0	0	0			REV__ENST00000520836.5_1_5:169174421-169268422:+|nuORF	REV__ENST00000520836.5_1_5:169174421-169268422:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	449.279452	896.544351	0.22283	0.00010011	0.23884	0.00010731	0.46167	0.00020742	449.2795781249216	43.631	0.34841	43.708	43.541	43.89	0.077515	-0.0075322	0.00017311	NaN	6.2058	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180880	+		27696	21891	15954	15955							0.09194081514044683
LTRAQLMFVV	10	Unmodified	_LTRAQLMFVV_					0	0	0		ENST00000409339.3_1_7:158464345-158468209:-|nuORF	ENST00000409339.3_1_7:158464345-158468209:-|nuORF	ENST00000409339.3_1_7:158464345-158468209:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3436889648438	2	589.341726	1176.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.94	1	112.94	112.44	113.44	0								0	0	0	0.38126	1	29341	29341		1.6526	0.17072	1				27697	10246	15955	15956	34263	34263					0.0876321093903698
LTRARGPG	8	Unmodified	_LTRARGPG_					0	0	0			REV__ENST00000330368.2_1_3:169486072-169487300:-|nuORF	REV__ENST00000330368.2_1_3:169486072-169487300:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2461242675781	2	414.245944	826.477334	0.048372	2.0038E-05	0.13871	5.746E-05	0.18708	7.7498E-05	414.2459270812091	14.831	0.47201	14.721	14.51	14.982	-0.10981					25	16	2	0	0	0	0.34337	1	886	886		5.2307	0	1	240060	+		27698	20035	15956	15957	34264	34264					0.05715471022949714
LTRELELV	8	Unmodified	_LTRELELV_					0	0	0			REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B	REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2556457519531	2	486.78985	971.565146	0.11223	5.4633E-05	-0.0394	-1.9179E-05	0.072831	3.5454E-05	486.7897241763642	27.4	0.54437	27.389	27.101	27.645	-0.01156					42	18	3	0	0	0	0.32435	1	4630	4630		23.148	0	1	240900	+		27699	14562	15957	15958	34265	34265					0.078226271030303
LTRGLLKVF	9	Unmodified	_LTRGLLKVF_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2646484375	2	523.839677	1045.6648	0.55839	0.0002925	-1.6709	-0.00087531	-1.1126	-0.0005828	523.8388765238683	52.846	0.35954	52.846	52.6	52.96	0					15	12	2	0	0	0	0.25526	1	12402	12402		1.8442	0	1	129510	+		27700	13885	15958	15959	34266	34266					0.14379489507655308
LTRGLLLM	8	Unmodified	_LTRGLLLM_					0	0	0			REV__ENST00000485978.1_1_9:136338979-136343630:-|nuORF	REV__ENST00000485978.1_1_9:136338979-136343630:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2774353027344	2	458.786056	915.557558	-0.27509	-0.00012621	0.55608	0.00025512	0.28099	0.00012892	458.786229255611	12.595	0.4796	12.595	12.498	12.977	0					28	16	3	0	0	0	0.3439	1	159	159		2.8892	2.2877	1	295430	+		27701	16898	15959	15960	34267	34267					0.09640196301779724
LTRHLRQR	8	Unmodified	_LTRHLRQR_					0	0	0		nc|ENSG00000153266|Q8TBJ5-2|FEZF2	nc|ENSG00000153266|Q8TBJ5-2|FEZF2	nc|ENSG00000153266|Q8TBJ5-2|FEZF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3303833007812	2	540.330873	1078.64719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.208	1	91.208	90.708	91.708	0								0	0	0	0.37078	1	24211	24211		5.2307	1.6342	1				27702	12766	15960	15961	34268	34268					0.1110158702535955
LTRKCFRHLAL	11	Unmodified	_LTRKCFRHLAL_					0	0	0		ENST00000472541.5_1_1:1235057-1244982:-|nuORF;nc|ENSG00000131584|Q96P50-1|ACAP3;ENSG00000131584|ENST00000354700|ACAP3	ENST00000472541.5_1_1:1235057-1244982:-|nuORF	ENST00000472541.5_1_1:1235057-1244982:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.7298889160156	3	453.267691	1356.78124	0.127	5.7563E-05	2.1363	0.00096833	2.2633	0.0010259	453.26870777506076	17.061	0.31862	17.061	16.867	17.186	0					24	10	3	0	0	0	0.33346	1	1496	1496		0.50596	0.09769	1	45698			27703	10895	15961	15962	34269	34269					0.1171248473592641
LTRKCFRHLAL	11	Unmodified	_LTRKCFRHLAL_					0	0	0		ENST00000472541.5_1_1:1235057-1244982:-|nuORF;nc|ENSG00000131584|Q96P50-1|ACAP3;ENSG00000131584|ENST00000354700|ACAP3	ENST00000472541.5_1_1:1235057-1244982:-|nuORF	ENST00000472541.5_1_1:1235057-1244982:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	453.267691	1356.78124	-0.021921	-9.9359E-06	2.5081	0.0011368	2.4862	0.0011269	453.2686939109996	17.201	0.40468	17.083	16.884	17.289	-0.11739	0.027107	0.00045429	NaN	0.50596	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38289			27704	10895	15961	15962							0.1171248473592641
LTRKCFRHLAL	11	Unmodified	_LTRKCFRHLAL_					0	0	0		ENST00000472541.5_1_1:1235057-1244982:-|nuORF;nc|ENSG00000131584|Q96P50-1|ACAP3;ENSG00000131584|ENST00000354700|ACAP3	ENST00000472541.5_1_1:1235057-1244982:-|nuORF	ENST00000472541.5_1_1:1235057-1244982:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	453.267691	1356.78124	0.24961	0.00011314	1.85	0.00083856	2.0997	0.0009517	453.26842728597427	17.085	0.40453	17.024	16.836	17.241	-0.060429	-0.032002	-0.00044053	NaN	0.50596	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37866			27705	10895	15961	15962							0.1171248473592641
LTRLISFDNVF	11	Unmodified	_LTRLISFDNVF_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.2469787597656	3	442.246839	1323.71869	0.5443	0.00024072	-0.48132	-0.00021286	0.062977	2.7851E-05	442.24667254145095	50.444	0.73068	50.444	50.166	50.896	0					69	26	4	0	0	0	0.36161	1	11690	11690		16.275	2.1038	1	1506900	+		27706	14828	15962	15963	34270	34270					0.06977617148686477
LTRLISFDNVF	11	Unmodified	_LTRLISFDNVF_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	442.246839	1323.71869	0.76431	0.00033802	-0.69243	-0.00030623	0.071884	3.1791E-05	442.24655872306937	50.405	0.87486	50.45	50.16	51.035	0.044891	-0.034137	-7.345E-05	NaN	16.275	75	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1420800	+		27707	14828	15962	15963							0.06977617148686477
LTRLISFDNVF	11	Unmodified	_LTRLISFDNVF_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	442.246839	1323.71869	0.86451	0.00038233	-0.79752	-0.0003527	0.066992	2.9627E-05	442.24654425159105	50.537	0.74693	50.558	50.177	50.924	0.020691	0.073885	-0.00021287	NaN	16.275	84	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1296400	+		27708	14828	15962	15963							0.06977617148686477
LTRNLSYLF	9	Unmodified	_LTRNLSYLF_					0	0	0			REV__nc|ENSG00000140527|Q6P2C0-2|WDR93	REV__nc|ENSG00000140527|Q6P2C0-2|WDR93	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.2723388671875	2	563.816399	1125.61824	0.72379	0.00040809	1.2347	0.00069617	1.9585	0.0011043	563.8168273449389	50.759	0.53881	50.806	50.604	51.142	0.046574					49	19	3	0	0	0	0.24848	1	11766	11766		13.906	3.0821	1	589040	+		27709	16040	15963	15964	34271	34271					0.06046004885683942
LTRNQIPR	8	Unmodified	_LTRNQIPR_					0	0	0		HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;nc|ENSG00000147874|Q7Z4H7-2|HAUS6	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7433166503906	2	499.298707	996.582862	0.1288	6.4307E-05	0.88121	0.00043999	1.01	0.00050429	499.2993492388987	22.465	0.41257	22.42	22.266	22.679	-0.044867					16	13	2	0	0	0	0.34337	1	3201	3201		5.2307	0.47466	1	29983			27710	4788	15964	15965	34272	34272					0.08443387148554393
LTRPGSSSL	9	Unmodified	_LTRPGSSSL_					0	0	0		ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7351379394531	2	459.256174	916.497795	-0.24171	-0.00011101	0.26444	0.00012145	0.022726	1.0437E-05	459.2562774195932	27.755	0.61794	27.755	27.589	28.207	0					35	21	2	0	0	0	0.17263	1	4756	4756		32.037	5.7693	1	191210			27711	6359	15965	15966	34273	34273					0.03620596892096728
LTRPGSSSL	9	Unmodified	_LTRPGSSSL_					0	0	0		ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7351989746094	2	459.256174	916.497795	-0.16827	-7.728E-05	-0.56596	-0.00025992	-0.73424	-0.0003372	459.25581020574805	27.444	0.88304	27.423	27.266	28.15	-0.021412					39	30	2	0	0	0	0.19888	1	4758	4758		32.037	4.4087	1	212570			27712	6359	15965	15966	34274	34274					0.03620596892096728
LTRPGSSSL	9	Unmodified	_LTRPGSSSL_					0	0	0		ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7350769042969	2	459.256174	916.497795	-0.24185	-0.00011107	-0.15751	-7.2338E-05	-0.39936	-0.00018341	459.2560046523796	27.769	0.59118	27.758	27.555	28.146	-0.011562					34	20	2	0	0	0	0.18022	1	4751	4751		30.703	14.554	1	168370			27713	6359	15965	15966	34275	34275					0.03620596892096728
LTRVPIRVL	9	Unmodified	_LTRVPIRVL_					0	0	0		ENST00000496749.1_1_14:51297263-51297419:-|nuORF	ENST00000496749.1_1_14:51297263-51297419:-|nuORF	ENST00000496749.1_1_14:51297263-51297419:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.79931640625	2	533.858401	1065.70225	0.62292	0.00033255	0.31356	0.0001674	0.93649	0.00049995	533.8586022342371	49.195	0.5177	49.195	48.97	49.488	0					45	18	3	0	0	0	0.23235	1	11337	11337		16.149	6.766	1	521290			27714	11242	15966	15967	34276	34276					0.17202580773277987
LTRWLRTRPEK	11	Unmodified	_LTRWLRTRPEK_					0	0	0		ENST00000554930.5_1_14:37667225-37854725:+|nuORF	ENST00000554930.5_1_14:37667225-37854725:+|nuORF	ENST00000554930.5_1_14:37667225-37854725:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.9562683105469	3	485.956282	1454.84702	0.34275	0.00016656	-0.20903	-0.00010158	0.13372	6.4983E-05	485.95613500214995	48.896	0.77237	48.896	48.636	49.408	0					73	27	4	0	0	0	0.45822	1	11215	11215		3.5927	1.3399	1	1654200			27715	11840	15967	15968	34277	34277					0.13778597182454178
LTRWLRTRPEK	11	Unmodified	_LTRWLRTRPEK_					0	0	0		ENST00000554930.5_1_14:37667225-37854725:+|nuORF	ENST00000554930.5_1_14:37667225-37854725:+|nuORF	ENST00000554930.5_1_14:37667225-37854725:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2906494140625	3	485.956282	1454.84702	0.28465	0.00013833	-0.19531	-9.4912E-05	0.089342	4.3416E-05	485.95617424198133	48.997	0.85223	49.041	48.768	49.621	0.044891					72	30	4	0	0	0	0.46842	1	11286	11286		2.2527	2.2527	1	1850900			27716	11840	15967	15968	34278	34278					0.13778597182454178
LTRWLRTRPEK	11	Unmodified	_LTRWLRTRPEK_					0	0	0		ENST00000554930.5_1_14:37667225-37854725:+|nuORF	ENST00000554930.5_1_14:37667225-37854725:+|nuORF	ENST00000554930.5_1_14:37667225-37854725:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	485.956282	1454.84702	0.34275	0.00016656	-0.20903	-0.00010158	0.13372	6.4983E-05	485.95613500214995	48.896	0.77237	48.896	48.636	49.408	0	-0.056777	-6.6323E-05	NaN	3.5927	73	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1654200			27717	11840	15967	15968							0.13778597182454178
LTRWLRTRPEK	11	Unmodified	_LTRWLRTRPEK_					0	0	0		ENST00000554930.5_1_14:37667225-37854725:+|nuORF	ENST00000554930.5_1_14:37667225-37854725:+|nuORF	ENST00000554930.5_1_14:37667225-37854725:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	485.956282	1454.84702	0.28465	0.00013833	-0.19531	-9.4912E-05	0.089342	4.3416E-05	485.95617424198133	48.997	0.85223	49.041	48.768	49.621	0.044891	0.088422	-4.6319E-05	NaN	3.5927	72	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1850900			27718	11840	15967	15968							0.13778597182454178
LTRWLRTRPEK	11	Unmodified	_LTRWLRTRPEK_					0	0	0		ENST00000554930.5_1_14:37667225-37854725:+|nuORF	ENST00000554930.5_1_14:37667225-37854725:+|nuORF	ENST00000554930.5_1_14:37667225-37854725:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	485.956282	1454.84702	0.1837	8.927E-05	-0.1021	-4.9617E-05	0.081597	3.9653E-05	485.9562235042846	48.889	0.8626	48.921	48.632	49.494	0.032043	-0.031645	8.9564E-05	NaN	3.5927	75	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1721200			27719	11840	15967	15968							0.13778597182454178
LTSAGPWPPGG	11	Unmodified	_LTSAGPWPPGG_					0	0	0		ENST00000601134.5_1_19:14805840-14818739:+|nuORF	ENST00000601134.5_1_19:14805840-14818739:+|nuORF	ENST00000601134.5_1_19:14805840-14818739:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7946166992188	2	520.263999	1038.51345	0.31637	0.0001646	0.4079	0.00021221	0.72427	0.00037681	520.264011874023	76.368	1.4979	76.368	75.592	77.09	0					100	54	2	0	0	0	0.3259	1	19748	19748		13.906	13.906	1	283700			27720	12257	15968	15969	34279	34279					-0.0042711659086762666
LTSAGPWPPGG	11	Unmodified	_LTSAGPWPPGG_					0	0	0		ENST00000601134.5_1_19:14805840-14818739:+|nuORF	ENST00000601134.5_1_19:14805840-14818739:+|nuORF	ENST00000601134.5_1_19:14805840-14818739:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	520.263999	1038.51345	0.45088	0.00023458	0.3694	0.00019219	0.82029	0.00042676	520.263957592201	76.274	1.4343	76.242	75.69	77.125	-0.031479	-0.11242	-9.0765E-05	NaN	13.906	91	52	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375440			27721	12257	15968	15969							-0.0042711659086762666
LTSAPRNVL	9	Unmodified	_LTSAPRNVL_					0	0	0		ENST00000517420.1_1_8:23193692-23193839:+|nuORF	ENST00000517420.1_1_8:23193692-23193839:+|nuORF	ENST00000517420.1_1_8:23193692-23193839:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002624511719	2	485.787641	969.56073	0.21636	0.00010511	0.26747	0.00012993	0.48383	0.00023504	485.78757127383744	46.337	1.1454	46.397	45.734	46.879	0.059834					68	41	2	0	0	0	0.16283	2	10504	10362;10504		29.082	2.8134	1	802440			27722	11435	15969	15970	34280;34281	34281					0.07473162680128098
LTSDLDRSGI	10	Unmodified	_LTSDLDRSGI_					0	0	0		ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7836303710938	2	538.782753	1075.55095	0.36744	0.00019797	1.0369	0.00055866	1.4043	0.00075664	538.7833937202972	22.803	0.62149	22.758	22.438	23.06	-0.044867					41	21	3	0	0	0	0.39009	1	3283	3283		5.2969	0	1	127280			27723	1063	15970	15971	34282	34282					0.01619929884100202
LTSFKNHLHR	10	Unmodified	_LTSFKNHLHR_					0	0	0		ADNP2|p.K740Sfs*3|1|0.37|ENSG00000101544|chr18:80137630-80137630|A/-|frameshift_variant;ADNP2|p.K753*|1|0.04|ENSG00000101544|chr18:80137668-80137669|-/T|frameshift_variant;ENSG00000101544|ENST00000262198|ADNP2	ADNP2|p.K740Sfs*3|1|0.37|ENSG00000101544|chr18:80137630-80137630|A/-|frameshift_variant	ADNP2|p.K740Sfs*3|1|0.37|ENSG00000101544|chr18:80137630-80137630|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.5433044433594	3	418.235156	1251.68364	-0.46592	-0.00019487	-3.5995	-0.0015055	-4.0655	-0.0017003	418.2346417401496	35.378	0.18744	35.455	35.308	35.495	0.077377					8	6	2	0	0	0	0.31867	1	7026	7026		7.9454	2.4221	1	62763			27724	18	15971	15972	34283	34283					0.06786419131412913
LTSFSGKL	8	Unmodified	_LTSFSGKL_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.9018859863281	2	426.744911	851.475269	-0.23301	-9.9436E-05	-0.059907	-2.5565E-05	-0.29292	-0.000125	426.74493732321656	51.885	0.37969	51.884	51.71	52.09	-0.00080872					19	13	2	0	0	0	0.33993	1	12126	12126		16.942	6.1184	1	160590			27725	7983	15972	15973	34284	34284					0.043589974944893584
LTSGIFETK	9	Unmodified	_LTSGIFETK_					0	0	0		nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000487981.5_1_20:57478601-57484479:+|nuORF	nc|ENSG00000087460|P63092-3|GNAS	nc|ENSG00000087460|P63092-3|GNAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.28302001953125	2	498.274032	994.533512	0.51197	0.0002551	-0.001714	-8.5403E-07	0.51025	0.00025425	498.2735866168381	39.89	0.46082	39.983	39.69	40.151	0.09267					52	15	4	0	0	0	0.064268	1	8405	8405		47.594	5.7548	1	325610			27726	1308	15973	15974	34285	34285					0.03602634349101663
LTSGITVFSA	10	Unmodified	_LTSGITVFSA_					0	0	0			REV__ZSCAN21|p.N246Mfs*240|1|0.3|ENSG00000166529|chr7:100063929-100063929|A/-|frameshift_variant	REV__ZSCAN21|p.N246Mfs*240|1|0.3|ENSG00000166529|chr7:100063929-100063929|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.9488830566406	2	498.274032	994.533512	0.23259	0.00011589	0.36116	0.00017996	0.59375	0.00029585	498.27377350037955	39.997	1.2143	39.997	39.012	40.226	0					66	43	3	0	0	0	0.20505	1	8491	8491		47.749	2.0088	1	220770	+		27727	23366	15974	15975	34286	34286					0.03602634349101663
LTSGPENTLF	10	Unmodified	_LTSGPENTLF_					0	0	0		ENST00000503952.5_1_4:128606686-128637588:+|nuORF;nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU	ENST00000503952.5_1_4:128606686-128637588:+|nuORF	ENST00000503952.5_1_4:128606686-128637588:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2591552734375	2	539.774396	1077.53424	0.67206	0.00036276	2.1883	0.0011812	2.8603	0.0015439	539.7756349923569	77.177	0.51318	77.177	76.983	77.496	0					29	18	2	0	0	0	0.25219	1	19926	19926		26.268	4.5215	1	233800			27728	5777	15975	15976	34287	34287					-0.001425710018565951
LTSGPENTLF	10	Unmodified	_LTSGPENTLF_					0	0	0		ENST00000503952.5_1_4:128606686-128637588:+|nuORF;nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU	ENST00000503952.5_1_4:128606686-128637588:+|nuORF	ENST00000503952.5_1_4:128606686-128637588:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7586059570312	2	539.774396	1077.53424	0.55419	0.00029914	2.7159	0.001466	3.2701	0.0017651	539.7759190007974	77.17	0.42455	77.225	76.922	77.346	0.055412					27	14	2	0	0	0	0.11961	1	19876	19876		43.772	3.8151	1	175120			27729	5777	15975	15976	34288	34288					-0.001425710018565951
LTSHDKRISD	10	Unmodified	_LTSHDKRISD_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3067016601562	2	586.306926	1170.5993	0.083448	4.8926E-05	-0.51379	-0.00030124	-0.43034	-0.00025231	586.3067540752902	17.89	0.75162	17.773	17.515	18.267	-0.11739					68	25	4	0	0	0	0.41168	1	1834	1834		1.3295	0	1	563220			27730	1258	15976	15977	34289	34289					0.020824235239842892
LTSHRRLHF	9	Unmodified	_LTSHRRLHF_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3773193359375	2	583.830706	1165.64686	0.29927	0.00017473	-1.1569	-0.00067545	-0.85766	-0.00050073	583.8300783356224	38.164	0.47733	38.261	38.064	38.542	0.097527					24	16	2	0	0	0	0.25938	1	7911	7911		1.8442	0.88196	1	161670			27731	3970	15977	15978	34290	34290					0.07066167305492854
LTSITFDAK	9	Unmodified	_LTSITFDAK_					0	0	0			REV__ENSG00000188585|ENST00000623247|CLEC20A	REV__ENSG00000188585|ENST00000623247|CLEC20A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.2826843261719	2	498.274032	994.533512	0.36928	0.000184	0.10444	5.2041E-05	0.47373	0.00023605	498.2736666557352	39.794	0.52334	39.893	39.622	40.146	0.099407					51	18	4	0	0	0	0.20626	1	8375	8375		22.736	0.98964	1	271400	+		27732	18558	15978	15979	34291	34291					0.036026343490902946
LTSITPRGR	9	Unmodified	_LTSITPRGR_					0	0	0		ENST00000436233.8_1_17:75208050-75208206:+|nuORF;ENST00000534767.1_1_11:43920467-43920710:+|nuORF	ENST00000436233.8_1_17:75208050-75208206:+|nuORF	ENST00000436233.8_1_17:75208050-75208206:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7984924316406	2	500.79854	999.582528	0.49402	0.00024741	1.0907	0.00054623	1.5847	0.00079364	500.7984015564007	86.624	0.9163	86.618	86.108	87.024	-0.0060425					60	35	3	0	0	0	0.31763	1	22809	22809		6.2058	0.47393	1	303270			27733	10521	15979	15980	34292	34292					0.08271967428709104
LTSKVNILI	9	Unmodified	_LTSKVNILI_					0	0	0		ENST00000521384.5_1_5:21751848-21889748:-|nuORF;nc|ENSG00000154162|P55289-2|CDH12;ENSG00000154162|ENST00000382254|CDH12	ENST00000521384.5_1_5:21751848-21889748:-|nuORF	ENST00000521384.5_1_5:21751848-21889748:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2793273925781	2	500.823692	999.632832	0.12543	6.2818E-05	0.34485	0.00017271	0.47028	0.00023553	500.82381209178243	59.605	0.55637	59.7	59.325	59.881	0.095089					29	19	3	0	0	0	0.2322	1	14496	14496		14.838	0.43289	1	186790			27734	5108	15980	15981	34293	34293					0.13300077033864
LTSLFKKMESG	11	Unmodified	_LTSLFKKMESG_					0	0	0			REV__ENSG00000128052|ENST00000263923|KDR	REV__ENSG00000128052|ENST00000263923|KDR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.8324584960938	2	620.833931	1239.65331	0.14732	9.1459E-05	0.006488	4.0279E-06	0.1538	9.5487E-05	621.3354878518427	100.25	0.35336	100.25	100.13	100.48	-0.006897					66	47	2	0	0	0	0.46655	1	26843	26843		2.4985	0.65425	1	137880	+		27735	15362	15981	15982	34294	34294					0.043068796313491475
LTSLQILQTKM	11	Unmodified	_LTSLQILQTKM_					0	0	0			REV__nc|ENSG00000121749|Q8TC07|TBC1D15	REV__nc|ENSG00000121749|Q8TC07|TBC1D15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.373046875	2	638.370681	1274.72681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.574	1	98.574	98.074	99.074	0								0	0	0	0.37501	1	26377	26377		2.7352	1.2533	1		+		27736	22971	15982	15983	34295	34295					0.10043428073799987
LTSLQILQTKM	11	Unmodified	_LTSLQILQTKM_					0	0	0			REV__nc|ENSG00000121749|Q8TC07|TBC1D15	REV__nc|ENSG00000121749|Q8TC07|TBC1D15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.3734130859375	2	638.370681	1274.72681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.967	1	96.044	95.544	96.544	0.077408								0	0	0	0.37501	1	25644	25644		2.7352	1.0826	1		+		27737	22971	15982	15983	34296	34296					0.10043428073799987
LTSLQILQTKM	11	Unmodified	_LTSLQILQTKM_					0	0	0			REV__nc|ENSG00000121749|Q8TC07|TBC1D15	REV__nc|ENSG00000121749|Q8TC07|TBC1D15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3737182617188	2	638.370681	1274.72681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.987	1	97.981	97.481	98.481	-0.0068283								0	0	0	0.37501	1	26241	26241		2.7352	1.2533	1		+		27738	22971	15982	15983	34297	34297					0.10043428073799987
LTSLYFSHFW	10	Unmodified	_LTSLYFSHFW_					0	0	0		ENST00000534968.5_1_1:160517020-160517359:-|nuORF	ENST00000534968.5_1_1:160517020-160517359:-|nuORF	ENST00000534968.5_1_1:160517020-160517359:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.8822326660156	3	434.21688	1299.62881	-0.22914	-9.9499E-05	-1.4043	-0.00060978	-1.6335	-0.00070928	434.5489894855819	15.518	0.14401	15.408	15.347	15.491	-0.10981					5	4	2	0	0	0	0.32162	1	1076	1076		0.15932	0	1	6946.1			27739	11667	15983	15984	34298	34298					-0.009020124598464463
LTSPNQRP	8	Unmodified	_LTSPNQRP_					0	0	0			REV__nc|ENSG00000183578|Q5GJ75|TNFAIP8L3	REV__nc|ENSG00000183578|Q5GJ75|TNFAIP8L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7483825683594	2	456.748516	911.482479	0.022276	1.0175E-05	-0.02364	-1.0798E-05	-0.0013641	-6.2303E-07	456.74836862321854	19.249	2.195	19.133	17.959	20.154	-0.11592					154	76	3	0	0	0	0.42077	1	2224	2224		15.847	4.2069	1	130040	+		27740	23132	15984	15985	34299	34299					0.02319730094905026
LTSPNQRP	8	Unmodified	_LTSPNQRP_					0	0	0			REV__nc|ENSG00000183578|Q5GJ75|TNFAIP8L3	REV__nc|ENSG00000183578|Q5GJ75|TNFAIP8L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7484436035156	2	456.748516	911.482479	0.012882	5.884E-06	0.034024	1.554E-05	0.046906	2.1424E-05	456.74837973298236	19.235	2.0863	19.18	18.033	20.119	-0.055693					143	73	2	0	0	0	0.39068	1	2194	2194		20.454	4.6064	1	141660	+		27741	23132	15984	15985	34300	34300					0.02319730094905026
LTSPTSEPIAP	11	Unmodified	_LTSPTSEPIAP_					0	0	0			REV__nc|ENSG00000163444|Q8IXX5-2|TMEM183A	REV__nc|ENSG00000163444|Q8IXX5-2|TMEM183A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7738647460938	2	556.795329	1111.5761	0.18691	0.00010407	0.14345	7.9871E-05	0.33036	0.00018394	556.7954522981569	26.334	0.44697	26.296	26.1	26.547	-0.038671					26	15	2	0	0	0	0.32736	1	4331	4331		12.241	2.1667	1	122510	+		27742	17052	15985	15986	34301	34301					0.024779846866522348
LTSPWNFAK	9	Unmodified	_LTSPWNFAK_					0	0	0			REV__nc|ENSG00000198521|P17038-2|ZNF43	REV__nc|ENSG00000198521|P17038-2|ZNF43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.31103515625	2	532.282192	1062.54983	0.59961	0.00031916	-0.15576	-8.2908E-05	0.44385	0.00023626	532.282152647403	45.143	1.6045	45.143	44.115	45.72	0					118	58	4	0	0	0	0.2322	1	10225	10225		6.2058	0	1	3438700	+		27743	18829	15986	15987	34302	34302					0.02105760305835247
LTSQFLPYF	9	Unmodified	_LTSQFLPYF_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.7840576171875	2	558.292225	1114.5699	0.4647	0.00025944	-0.56272	-0.00031416	-0.098021	-5.4724E-05	558.2916991993053	84.192	0.55505	84.175	83.998	84.553	-0.016823					30	23	2	0	0	0	0.15219	2	22056	22056;22068		30.637	1.555	1	227940			27744	4338	15987	15988	34303;34304	34303					0.017195112458011863
LTSRLSSTII	10	Unmodified	_LTSRLSSTII_					0	0	0		ENST00000371142.8_1_10:98280564-98280600:-|nuORF	ENST00000371142.8_1_10:98280564-98280600:-|nuORF	ENST00000371142.8_1_10:98280564-98280600:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.787353515625	2	545.826963	1089.63937	0.52683	0.00028756	0.98121	0.00053557	1.508	0.00082313	545.8276198798579	24.799	0.31814	24.743	24.544	24.862	-0.055931					17	10	2	0	0	0	0.31926	1	3889	3889		5.7319	0	1	51332			27745	9811	15988	15989	34305	34305					0.09813970194591093
LTSRRRVK	8	Unmodified	_LTSRRRVK_					0	0	0			REV__ENST00000521277.5_2_6:109416334-109416490:+|nuORF	REV__ENST00000521277.5_2_6:109416334-109416490:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.8009948730469	2	508.327799	1014.64105	0.65587	0.00033339	1.1576	0.00058847	1.8135	0.00092186	508.3282132699375	36.731	0.45336	36.824	36.633	37.086	0.093018					25	16	2	0	0	0	0.33993	1	7514	7514		16.942	1.0951	1	166610	+		27746	21898	15989	15990	34306	34306					0.1343106879385232
LTSSSAHEDL	10	Unmodified	_LTSSSAHEDL_					0	0	0		ENST00000472864.1_1_10:43699167-43699266:-|nuORF	ENST00000472864.1_1_10:43699167-43699266:-|nuORF	ENST00000472864.1_1_10:43699167-43699266:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2595825195312	2	530.251286	1058.48802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.197	1	96.193	95.693	96.693	-0.0038147								0	0	0	0.37044	1	25720	25720		6.2058	0	1				27747	10899	15990	15991	34307	34307					-0.038886359039452145
LTSSWLTLF	9	Unmodified	_LTSSWLTLF_					0	0	0		ENSG00000181104|ENST00000319211|F2R	ENSG00000181104|ENST00000319211|F2R	ENSG00000181104|ENST00000319211|F2R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7840576171875	2	534.292225	1066.5699	0.7431	0.00039703	3.0219	0.0016146	3.765	0.0020116	534.7967746420948	84.118	0.14798	84.118	84.057	84.205	0					8	5	2	0	0	0	0.1669	1	22050	22050		28.487	3.0875	1	205980			27748	7224	15991	15992	34308	34308					0.03927511245797177
LTSYALRW	8	Unmodified	_LTSYALRW_					0	0	0			REV__nc|ENSG00000111912|Q8NI08-5|NCOA7	REV__nc|ENSG00000111912|Q8NI08-5|NCOA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2897644042969	2	505.276909	1008.53927	0.39	0.00019706	-1.012	-0.00051135	-0.62201	-0.00031429	505.2766699973159	59.19	1.4354	59.175	58.86	60.295	-0.014267					68	50	2	0	0	0	0.34092	1	14511	14511		8.5933	0	1	602130	+		27749	14746	15992	15993	34309	34309					0.03533777651409764
LTSYVYHK	8	Unmodified	_LTSYVYHK_					0	0	0			REV__ENSG00000168143|ENST00000306858|FAM83B	REV__ENSG00000168143|ENST00000306858|FAM83B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2769470214844	2	505.768917	1009.52328	0.53998	0.00027311	-0.91597	-0.00046327	-0.37599	-0.00019016	505.7685418248532	50.33	0.46695	50.33	50.077	50.544	0					30	16	2	0	0	0	0.32886	1	11629	11629		21.747	2.3076	1	314180	+		27750	17443	15993	15994	34310	34310					0.018900714145161146
LTTALRQR	8	Unmodified	_LTTALRQR_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7762451171875	2	479.793258	957.571963	0.30614	0.00014688	1.3218	0.00063418	1.6279	0.00078106	479.79400850700523	82.581	0.61442	82.581	82.23	82.844	0					35	22	2	0	0	0	0.34408	1	21629	21629		2.3027	1.7012	1	151110			27751	460	15994	15995	34311	34311					0.0914798477426757
LTTALRQR	8	Unmodified	_LTTALRQR_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.793258	957.571963	0.24422	0.00011718	1.1914	0.00057164	1.4357	0.00068882	479.7938099589576	82.342	0.5944	82.415	82.158	82.752	0.073097	-0.08295	-4.2698E-05	NaN	2.3027	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169890			27752	460	15994	15995							0.0914798477426757
LTTALSMIVY	10	Unmodified	_LTTALSMIVY_					0	0	0		SLC35G2|p.T290Yfs*59|1|0.04|ENSG00000168917|chr3:136855324-136855325|-/T|frameshift_variant;ENSG00000168917|ENST00000446465|SLC35G2	SLC35G2|p.T290Yfs*59|1|0.04|ENSG00000168917|chr3:136855324-136855325|-/T|frameshift_variant	SLC35G2|p.T290Yfs*59|1|0.04|ENSG00000168917|chr3:136855324-136855325|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.8212280273438	2	556.307018	1110.59948	0.33208	0.00018474	1.5234	0.00084749	1.8555	0.0010322	556.3065168996452	62.868	0.18039	62.868	62.776	62.956	0					12	6	3	0	0	0	0.25875	1	15539	15539		25.399	10.561	1	139340			27753	6312	15995	15996	34312	34312					0.048607071996229934
LTTCHTSL	8	Unmodified	_LTTCHTSL_					0	0	0		ENST00000361271.7_1_10:17636302-17641322:-|nuORF	ENST00000361271.7_1_10:17636302-17641322:-|nuORF	ENST00000361271.7_1_10:17636302-17641322:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.5934143066406	2	438.218203	874.421853	-0.011456	-5.0202E-06	0.24936	0.00010927	0.2379	0.00010425	438.2184057657143	21.993	0.90184	21.893	21.744	22.645	-0.10034					46	32	2	0	0	0	0.33245	1	3056	3056		19.439	0	1	81946			27754	9687	15996	15997	34313	34313					-0.020381232796808035
LTTECEDVL	9	Unmodified	_LTTECEDVL_					0	0	0		ENSG00000117000|ENST00000372771|RLF;RLF|p.D1028Afs*6|1|0.23|ENSG00000117000|chr1:40237785-40237786|AT/-|frameshift_variant	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.7393493652344	2	511.739165	1021.46378	0.11991	6.1362E-05	0.28144	0.00014402	0.40135	0.00020538	511.73909886884263	69.561	0.73562	69.627	69.366	70.101	0.066048					57	25	3	0	0	0	0.24581	1	17569	17569		16.942	0	1	578960			27755	2769	15997	15998	34314	34314					-0.04609612381818806
LTTGALLK	8	Unmodified	_LTTGALLK_					0	0	0		ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.2047424316406	2	408.763104	815.511654	0.11328	4.6303E-05	-0.11215	-4.5843E-05	0.001127	4.6067E-07	408.7629548067043	37.776	0.43325	37.867	37.609	38.042	0.090881					27	15	3	0	0	0	0.23494	1	7817	7817		37.974	0	1	115940			27756	1255	15998	15999	34315	34315					0.09651874391204274
LTTLGQGK	8	Unmodified	_LTTLGQGK_					0	0	0			REV__ENSG00000176542|ENST00000316407|USF3	REV__ENSG00000176542|ENST00000316407|USF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.8912048339844	2	409.242535	816.470518	-0.33251	-0.00013608	0.044482	1.8204E-05	-0.28803	-0.00011787	409.24246782575585	13.292	0.31412	13.225	13.073	13.388	-0.067495					22	10	3	0	0	0	0.34353	1	360	360		4.756	0	1	107520	+		27757	17942	15999	16000	34316	34316					0.05494113351721808
LTTLHCYRKGL	11	Unmodified	_LTTLHCYRKGL_					0	0	0		ENST00000593183.2_1_19:16013215-16014022:-|nuORF	ENST00000593183.2_1_19:16013215-16014022:-|nuORF	ENST00000593183.2_1_19:16013215-16014022:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.576171875	3	435.576302	1303.70708	-0.080419	-3.5029E-05	-0.33899	-0.00014765	-0.41941	-0.00018268	435.57617488939457	37.975	0.85429	38.073	37.768	38.622	0.097527					84	30	4	0	0	0	0.43198	1	7854	7854		7.0371	0.41363	1	879460			27758	12207	16000	16001	34317	34317					0.06737096853726143
LTTLPFSSSL	10	Unmodified	_LTTLPFSSSL_					0	0	0			REV__ENST00000437099.6_1_17:9818975-9819089:-|nuORF	REV__ENST00000437099.6_1_17:9818975-9819089:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2963256835938	2	533.294965	1064.57538	0.59644	0.00031808	0.71743	0.0003826	1.3139	0.00070068	533.2952258717031	36.183	0.76752	36.183	35.932	36.7	0					52	27	3	0	0	0	0.2811	1	7364	7364		22.736	0	1	951010	+		27759	21013	16001	16002	34318	34318					0.04567190037619184
LTTRECWN	8	Unmodified	_LTTRECWN_					0	0	0			REV__nc|ENSG00000130164|P01130-3|LDLR	REV__nc|ENSG00000130164|P01130-3|LDLR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.7388916015625	2	511.739834	1021.46511	0.13752	7.0373E-05	-1.3943	-0.0007135	-1.2567	-0.00064312	511.738929427247	69.622	0.63951	69.6	69.352	69.991	-0.022087					47	23	3	0	0	0	0.42077	1	17588	17588		15.847	0	1	588890	+		27760	15440	16002	16003	34319	34319					-0.04475933502408225
LTTRVLNPT	9	Unmodified	_LTTRVLNPT_					0	0	0		ENST00000417226.6_1_3:128998609-129007820:+|nuORF	ENST00000417226.6_1_3:128998609-129007820:+|nuORF	ENST00000417226.6_1_3:128998609-129007820:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2505187988281	2	507.800749	1013.58694	0.45283	0.00022995	-0.095667	-4.858E-05	0.35716	0.00018137	507.8006144266329	32.574	0.41409	32.629	32.45	32.864	0.055309					21	14	2	0	0	0	0.25527	1	6254	6254		8.7454	0	1	186060			27761	10332	16003	16004	34320	34320					0.0806943185162936
LTTRVPKT	8	Unmodified	_LTTRVPKT_					0	0	0		ENST00000356218.8_1_14:52156474-52156555:+|nuORF	ENST00000356218.8_1_14:52156474-52156555:+|nuORF	ENST00000356218.8_1_14:52156474-52156555:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7405700683594	2	458.284734	914.554916	-0.048321	-2.2145E-05	0.77261	0.00035407	0.72429	0.00033193	458.28496895954765	16.303	0.2491	16.303	16.184	16.433	0					14	8	2	0	0	0	0.34408	1	1319	1319		0	0	1	18943			27762	9618	16004	16005	34321	34321					0.09422064168484212
LTTSRLHT	8	Unmodified	_LTTSRLHT_					0	0	0		ENST00000450775.2_1_16:725790-727700:+|nuORF	ENST00000450775.2_1_16:725790-727700:+|nuORF	ENST00000450775.2_1_16:725790-727700:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.25616455078125	2	464.764166	927.513779	-0.10157	-4.7204E-05	-0.16701	-7.762E-05	-0.26857	-0.00012482	464.763986720181	26.529	0.65059	26.491	26.069	26.72	-0.038671					41	22	2	0	0	0	0.35375	1	4315	4315		24.674	1.5255	1	158960			27763	10642	16005	16006	34322	34322					0.047123031289856954
LTTTYVLF	8	Unmodified	_LTTTYVLF_					0	0	0			REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	REV__nc|ENSG00000196376|Q5T1Q4-2|SLC35F1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.27716064453125	2	479.268219	956.521884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.32	1	72.32	71.82	72.82	0								0	0	0	0.35014	1	18429	18429		14.582	0	1		+		27764	18645	16006	16007	34323	34323					0.041884373257630614
LTTVDIVTL	9	Unmodified	_LTTVDIVTL_					0	0	0		IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.8004455566406	2	487.792058	973.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.04	1	84.04	83.54	84.54	0								0	0	0	0.20238	1	22012	22012		21.747	4.8044	1				27765	1585	16007	16008	34324	34324					0.08172091525955238
LTTVDIVTL	9	Unmodified	_LTTVDIVTL_					0	0	0		IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.80010986328125	2	487.792058	973.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.143	1	88.143	87.643	88.643	0								0	0	0	0.22065	1	23271	23271		15.847	4.2069	1				27766	1585	16007	16008	34325	34325					0.08172091525955238
LTTVDIVTL	9	Unmodified	_LTTVDIVTL_					0	0	0		IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.799560546875	2	487.792058	973.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.461	1	85.542	85.042	86.042	0.080887								0	0	0	0.16039	1	22442	22442		32.305	3.8186	1				27767	1585	16007	16008	34326	34326					0.08172091525955238
LTTVDIVTL	9	Unmodified	_LTTVDIVTL_					0	0	0		IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.79974365234375	2	487.792058	973.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.61	1	85.695	85.195	86.195	0.084251								0	0	0	0.18374	1	22488	22488		26.884	3.7352	1				27768	1585	16007	16008	34327	34327					0.08172091525955238
LTTVDIVTL	9	Unmodified	_LTTVDIVTL_					0	0	0		IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.79962158203125	2	487.792058	973.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.805	1	85.889	85.389	86.389	0.084251								0	0	0	0.18374	1	22548	22548		26.884	5.137	1				27769	1585	16007	16008	34328	34328					0.08172091525955238
LTTVDIVTL	9	Unmodified	_LTTVDIVTL_					0	0	0		IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.8002014160156	2	487.792058	973.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.019	1	88.108	87.608	88.608	0.089195								0	0	0	0.22065	1	23227	23227		15.847	4.2069	1				27770	1585	16007	16008	34329	34329					0.08172091525955238
LTTVDIVTL	9	Unmodified	_LTTVDIVTL_					0	0	0		IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.79974365234375	2	487.792058	973.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.36	1	89.451	88.951	89.951	0.090569								0	0	0	0.20639	1	23637	23637		20.454	0	1				27771	1585	16007	16008	34330	34330					0.08172091525955238
LTTVDIVTL	9	Unmodified	_LTTVDIVTL_					0	0	0		IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7996826171875	2	487.792058	973.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.553	1	83.536	83.036	84.036	-0.016823								0	0	0	0.12743	1	21849	21849		39.957	7.6518	1				27772	1585	16007	16008	34331	34331					0.08172091525955238
LTTVDIVTL	9	Unmodified	_LTTVDIVTL_					0	0	0		IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7997741699219	2	487.792058	973.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.695	1	83.679	83.179	84.179	-0.016823								0	0	0	0.10131	1	21893	21893		46.021	3.9264	1				27773	1585	16007	16008	34332	34332					0.08172091525955238
LTTVDIVTL	9	Unmodified	_LTTVDIVTL_					0	0	0		IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.8005676269531	2	487.792058	973.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.207	1	84.19	83.69	84.69	-0.016823								0	0	0	0.16039	1	22052	22052		32.305	3.8186	1				27774	1585	16007	16008	34333	34333					0.08172091525955238
LTTVDIVTL	9	Unmodified	_LTTVDIVTL_					0	0	0		IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7999572753906	2	487.792058	973.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.137	1	88.134	87.634	88.634	-0.0028381								0	0	0	0.21009	1	23256	23256		19.257	3.4098	1				27775	1585	16007	16008	34334	34334					0.08172091525955238
LTTVDIVTL	9	Unmodified	_LTTVDIVTL_					0	0	0		IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant;ENSG00000100385|ENST00000216223|IL2RB	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	IL2RB|p.G253Rfs*29|1|0.05|ENSG00000100385|chr22:37135389-37135390|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7996826171875	2	487.792058	973.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.496	1	88.493	87.993	88.993	-0.0028381								0	0	0	0.18374	1	23367	23367		26.884	5.137	1				27776	1585	16007	16008	34335	34335					0.08172091525955238
LTVAFITFK	9	Unmodified	_LTVAFITFK_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;nc|ENSG00000167165|P19224-2|UGT1A6;ENST00000450233.1_1_2:234678284-234681202:+|nuORF;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000167165|ENST00000305139|UGT1A6;ENSG00000241635|ENST00000305208|UGT1A1;nc|ENSG00000288705|P35504|UGT1A5;ENSG00000244474|ENST00000373409|UGT1A4;nc|ENSG00000288702|P35503|UGT1A3	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000167165|ENST00000305139|UGT1A6;ENSG00000241635|ENST00000305208|UGT1A1;nc|ENSG00000288705|P35504|UGT1A5;nc|ENSG00000288702|P35503|UGT1A3	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3135375976562	2	520.312961	1038.61137	0.43216	0.00022486	0.71338	0.00037118	1.1455	0.00059604	520.3134855186321	70.269	0.97897	70.269	69.732	70.711	0					73	35	3	0	0	0	0.082647	1	17803	17803		61.602	28.816	1	732430			27777	8529;8544;8548;8571;13008;6154;8535	16008	16009	34336	34336					0.09360692005134297
LTVAFITFK	9	Unmodified	_LTVAFITFK_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;nc|ENSG00000167165|P19224-2|UGT1A6;ENST00000450233.1_1_2:234678284-234681202:+|nuORF;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000167165|ENST00000305139|UGT1A6;ENSG00000241635|ENST00000305208|UGT1A1;nc|ENSG00000288705|P35504|UGT1A5;ENSG00000244474|ENST00000373409|UGT1A4;nc|ENSG00000288702|P35503|UGT1A3	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000167165|ENST00000305139|UGT1A6;ENSG00000241635|ENST00000305208|UGT1A1;nc|ENSG00000288705|P35504|UGT1A5;nc|ENSG00000288702|P35503|UGT1A3	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.313720703125	2	520.312961	1038.61137	0.35684	0.00018567	0.80992	0.00042141	1.1668	0.00060708	520.3135087499661	70.223	1.1159	70.289	69.769	70.885	0.066048					74	39	3	0	0	0	0.04299	2	17779	17779;17828		55.503	24.322	1	561020			27778	8529;8544;8548;8571;13008;6154;8535	16008	16009	34337;34338	34337					0.09360692005134297
LTVAFITFK	9	Unmodified	_LTVAFITFK_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;nc|ENSG00000167165|P19224-2|UGT1A6;ENST00000450233.1_1_2:234678284-234681202:+|nuORF;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000167165|ENST00000305139|UGT1A6;ENSG00000241635|ENST00000305208|UGT1A1;nc|ENSG00000288705|P35504|UGT1A5;ENSG00000244474|ENST00000373409|UGT1A4;nc|ENSG00000288702|P35503|UGT1A3	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000167165|ENST00000305139|UGT1A6;ENSG00000241635|ENST00000305208|UGT1A1;nc|ENSG00000288705|P35504|UGT1A5;nc|ENSG00000288702|P35503|UGT1A3	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3128662109375	2	520.312961	1038.61137	0.3843	0.00019995	0.95672	0.00049779	1.341	0.00069775	520.3135465036767	70.312	0.91364	70.287	69.752	70.666	-0.024773					70	32	3	0	0	0	0.026579	1	17821	17821		61.602	28.816	1	579630			27779	8529;8544;8548;8571;13008;6154;8535	16008	16009	34339	34339					0.09360692005134297
LTVAIVSY	8	Unmodified	_LTVAIVSY_					0	0	0		nc|ENSG00000089250|P29475-3|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-3|NOS1	nc|ENSG00000089250|P29475-3|NOS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.25469970703125	2	433.255111	864.49567	-0.15076	-6.5316E-05	-0.83373	-0.00036122	-0.98449	-0.00042653	433.2550095854782	95.996	1.3446	96.074	95.701	97.046	0.077408					376	125	5	0	0	0	0.42758	1	25764	25764		13.508	0	1	10421000			27780	1356	16009	16010	34340	34340					0.058001681542691585
LTVAMAGLVV	10	Unmodified	_LTVAMAGLVV_					0	0	0		ENSG00000122679|ENST00000242249|RAMP3	ENSG00000122679|ENST00000242249|RAMP3	ENSG00000122679|ENST00000242249|RAMP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.8004455566406	2	487.291171	972.567789	0.51563	0.00025126	-2.2182	-0.0010809	-1.7026	-0.00082965	487.2902637753719	84.324	0.6051	84.324	84.057	84.663	0					35	22	2	0	0	0	0.30958	1	22071	22071		19.257	1.122	1	91595			27781	3060	16010	16011	34341	34341					0.08040759236359918
LTVCETTT	8	Unmodified	_LTVCETTT_					0	0	0		nc|ENSG00000175497|Q8N608-4|DPP10;nc|ENSG00000175497|Q8N608-2|DPP10;ENSG00000175497|ENST00000410059|DPP10;nc|ENSG00000175497|Q8N608-3|DPP10	nc|ENSG00000175497|Q8N608-4|DPP10	nc|ENSG00000175497|Q8N608-4|DPP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.21026611328125	2	434.210043	866.405534	0.035978	1.5622E-05	0.65149	0.00028288	0.68746	0.0002985	434.2102137338502	72.414	0.91911	72.386	72.092	73.011	-0.027275					72	32	3	0	0	0	0.33916	1	18466	18466		26.341	1.6674	1	1047000			27782	6868	16011	16012	34342	34342					-0.03301249236471904
LTVDPQVVT	9	Unmodified	_LTVDPQVVT_					0	0	0		ENSG00000198216|ENST00000367573|CACNA1E	ENSG00000198216|ENST00000367573|CACNA1E	ENSG00000198216|ENST00000367573|CACNA1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	486.274032	970.533512	0.52337	0.0002545	-0.93904	-0.00045663	-0.41567	-0.00020213	486.2739044391981	65.879	0.32056	65.879	65.634	65.955	0					18	11	2	0	0	0	0.21905	1	16450	16450		11.64	1.5664	1	155710			27783	8052	16012	16013	34343	34343					0.0470663434908829
LTVDPQVVT	9	Unmodified	_LTVDPQVVT_					0	0	0		ENSG00000198216|ENST00000367573|CACNA1E	ENSG00000198216|ENST00000367573|CACNA1E	ENSG00000198216|ENST00000367573|CACNA1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8003845214844	2	486.274032	970.533512	0.36515	0.00017756	-0.45145	-0.00021953	-0.086303	-4.1967E-05	486.2739752402448	65.705	0.21085	65.794	65.628	65.839	0.088882					13	7	3	0	0	0	0.24311	1	16380	16380		16.942	1.0951	1	104800			27784	8052	16012	16013	34344	34344					0.0470663434908829
LTVDPQVVT	9	Unmodified	_LTVDPQVVT_					0	0	0		ENSG00000198216|ENST00000367573|CACNA1E	ENSG00000198216|ENST00000367573|CACNA1E	ENSG00000198216|ENST00000367573|CACNA1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80035400390625	2	486.274032	970.533512	0.46699	0.00022709	0.0098345	4.7823E-06	0.47683	0.00023187	486.2740475852341	65.739	0.33591	65.728	65.586	65.922	-0.011337					17	11	2	0	0	0	0.24311	1	16398	16398		16.942	2.104	1	120860			27785	8052	16012	16013	34345	34345					0.0470663434908829
LTVGAMKVN	9	Unmodified	_LTVGAMKVN_					0	0	0		ENST00000274496.9_1_5:143539764-143539935:-|nuORF	ENST00000274496.9_1_5:143539764-143539935:-|nuORF	ENST00000274496.9_1_5:143539764-143539935:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7822570800781	2	466.76532	931.516088	0.072322	3.3757E-05	0.45331	0.00021159	0.52563	0.00024535	466.76548865135453	52.118	0.67706	52.168	51.817	52.494	0.050571					36	24	2	0	0	0	0.25314	1	12303	12303		15.847	1.2655	1	507640			27786	9099	16013	16014	34346	34346					0.04759015542447287
LTVGNNEFF	9	Unmodified	_LTVGNNEFF_					0	0	0		nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;nc|ENSG00000040341|Q9NUL3-7|STAU2;ENST00000521451.5_1_8:74528012-74659064:-|nuORF	nc|ENSG00000040341|Q9NUL3-8|STAU2	nc|ENSG00000040341|Q9NUL3-8|STAU2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3135375976562	2	520.756007	1039.49746	0.45515	0.00023702	-0.035999	-1.8747E-05	0.41915	0.00021828	520.756049407824	70.347	0.60772	70.347	70.131	70.739	0					48	21	3	0	0	0	0.1939	1	17803	17803		30.637	13.694	1	379980			27787	601	16014	16015	34347	34347					-0.020708228277499074
LTVGPHRSL	9	Unmodified	_LTVGPHRSL_					0	0	0			REV__ENSG00000111701|ENST00000229304|APOBEC1	REV__ENSG00000111701|ENST00000229304|APOBEC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2693786621094	2	490.287808	978.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.93	1	25.93	25.43	26.43	0								0	0	0	0.2489	1	4199	4199		6.7232	1.4925	1		+		27788	14734	16015	16016	34348	34348					0.07092582399980074
LTVPVFLMIVH	11	Unmodified	_LTVPVFLMIVH_					0	0	0			REV__nc|ENSG00000080815|P49768-3|PSEN1;REV__nc|ENSG00000288674|P49810-2|PSEN2	REV__nc|ENSG00000288674|P49810-2|PSEN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.8754272460938	2	634.875402	1267.73625	0.21224	0.00013475	-0.4118	-0.00026144	-0.19956	-0.0001267	634.8751910348765	18.21	0.59653	18.21	17.991	18.588	0					36	20	3	0	0	0	0.46059	1	1901	1901		3.2813	0	1	75541	+		27789	13894;16202	16016	16017	34349	34349					0.11309241150001981
LTVRHKKI	8	Unmodified	_LTVRHKKI_					0	0	0			REV__ENST00000372847.1_1_9:131140285-131150177:+|nuORF	REV__ENST00000372847.1_1_9:131140285-131150177:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.2826843261719	2	497.829643	993.644734	0.32405	0.00016132	-0.92815	-0.00046206	-0.60409	-0.00030074	497.82930663046534	39.574	0.35746	39.673	39.511	39.868	0.099403					18	12	2	0	0	0	0.3366	1	8375	8375		12.532	0	1	144080	+		27790	17365	16017	16018	34350	34350					0.14765738567689368
LTVRSVGRY	9	Unmodified	_LTVRSVGRY_					0	0	0			REV__ENSG00000133477|ENST00000333407|FAM83F;REV__ENST00000488874.1_1_22:40391391-40393947:+|nuORF	REV__ENST00000488874.1_1_22:40391391-40393947:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8189086914062	2	525.806365	1049.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.644	1	34.644	34.144	35.144	0								0	0	0	0.21673	1	6853	6853		17.113	3.605	1		+		27791	15625;21583	16018	16019	34351	34351					0.07536253945772842
LTVRSVGRY	9	Unmodified	_LTVRSVGRY_					0	0	0			REV__ENSG00000133477|ENST00000333407|FAM83F;REV__ENST00000488874.1_1_22:40391391-40393947:+|nuORF	REV__ENST00000488874.1_1_22:40391391-40393947:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8189697265625	2	525.806365	1049.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.475	1	34.553	34.053	35.053	0.077377								0	0	0	0.19932	1	6796	6796		22.736	0	1		+		27792	15625;21583	16018	16019	34352	34352					0.07536253945772842
LTVSCLPKF	9	Unmodified	_LTVSCLPKF_					0	0	0		ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	ENSG00000168282|ENST00000305386|MGAT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7755126953125	2	504.283346	1006.55214	0.41821	0.0002109	-2.5995	-0.0013109	-2.1813	-0.0011	504.7842968258341	72.849	2.1697	72.82	71.628	73.798	-0.029305					141	78	3	0	0	0	0.21303	1	18474	18474		21.747	3.6117	1	155170			27793	6263	16019	16020	34353	34353					0.049124727192975115
LTVSLSLSASV	11	Unmodified	_LTVSLSLSASV_					0	0	0		ENSG00000113262|ENST00000517717|GRM6	ENSG00000113262|ENST00000517717|GRM6	ENSG00000113262|ENST00000517717|GRM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8135375976562	2	538.813522	1075.61249	0.6218	0.00033504	0.51842	0.00027933	1.1402	0.00061437	538.8137515962144	33.573	0.60425	33.573	33.336	33.94	0					47	21	3	0	0	0	0.36257	1	6519	6519		16.149	1.3108	1	409980			27794	2483	16020	16021	34354	34354					0.07770861583389888
LTVTIKRFPY	10	Unmodified	_LTVTIKRFPY_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8696899414062	2	619.368798	1236.72304	0.37078	0.00022965	1.7351	0.0010747	2.1059	0.0013043	619.370569418945	91.757	1.4647	91.757	91.303	92.768	0.00046539					206	95	3	0	0	0	0.40992	1	24648	24648		1.6526	0	1	1022300			27795	6225;11932	16021	16022	34355	34355					0.11415126362294359
LTVTRALPF	9	Unmodified	_LTVTRALPF_					0	0	0			REV__ENST00000304411.2_1_3:71804264-71804414:+|nuORF	REV__ENST00000304411.2_1_3:71804264-71804414:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7878112792969	2	509.30821	1016.60187	0.38067	0.00019388	-0.3461	-0.00017627	0.034572	1.7608E-05	509.3079341659248	53.879	0.72625	53.869	53.531	54.258	-0.0096054					49	26	3	0	0	0	0.2322	1	12826	12826		14.838	0.93222	1	665100	+		27796	19843	16022	16023	34356	34356					0.09422923719603205
LTVYVPPSI	9	Unmodified	_LTVYVPPSI_					0	0	0		HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;HMCN1|p.A5600Gfs*20|1|0.2|ENSG00000143341|chr1:186189767-186189768|-/G|frameshift_variant;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.788818359375	2	494.789318	987.564084	0.44307	0.00021923	-0.71269	-0.00035263	-0.26962	-0.00013341	494.7889469754428	82.256	0.71134	82.231	82.004	82.715	-0.02404					46	27	2	0	0	0	0.14099	1	21445	21445		42.095	42.095	1	739610			27797	4502	16023	16024	34357	34357					0.06980412734139918
LTVYYPPEVSI	11	Unmodified	_LTVYYPPEVSI_					0	0	0		PVR|p.F289Lfs*10|1|0.23|ENSG00000073008|chr19:44657781-44657781|C/-|frameshift_variant;nc|ENSG00000073008|P15151-3|PVR;nc|ENSG00000073008|P15151-2|PVR;nc|ENSG00000073008|P15151-4|PVR;ENST00000187830.2_1_19:45147391-45165075:+|nuORF;nc|ENSG00000073008|P15151|PVR;ENSG00000073008|ENST00000425690|PVR	PVR|p.F289Lfs*10|1|0.23|ENSG00000073008|chr19:44657781-44657781|C/-|frameshift_variant	PVR|p.F289Lfs*10|1|0.23|ENSG00000073008|chr19:44657781-44657781|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.563720703125	3	427.563945	1279.67001	-0.25528	-0.00010915	0.27877	0.00011919	0.023487	1.0042E-05	427.5639623237286	41.237	0.70761	41.237	40.796	41.504	0					70	25	3	0	0	0	0.10264	3	8818	8818;8863;8914		27.088	9.2252	1	980610			27798	994	16024	16025	34358;34359;34360	34358					0.04135703788961109
LTVYYPPEVSI	11	Unmodified	_LTVYYPPEVSI_					0	0	0		PVR|p.F289Lfs*10|1|0.23|ENSG00000073008|chr19:44657781-44657781|C/-|frameshift_variant;nc|ENSG00000073008|P15151-3|PVR;nc|ENSG00000073008|P15151-2|PVR;nc|ENSG00000073008|P15151-4|PVR;ENST00000187830.2_1_19:45147391-45165075:+|nuORF;nc|ENSG00000073008|P15151|PVR;ENSG00000073008|ENST00000425690|PVR	PVR|p.F289Lfs*10|1|0.23|ENSG00000073008|chr19:44657781-44657781|C/-|frameshift_variant	PVR|p.F289Lfs*10|1|0.23|ENSG00000073008|chr19:44657781-44657781|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.5638122558594	3	427.563945	1279.67001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.989	1	41.079	40.579	41.579	0.090252								0	0	0	0.20529	1	8793	8793		20.871	3.008	1				27799	994	16024	16025	34361	34361					0.04135703788961109
LTWDTSITT	9	Unmodified	_LTWDTSITT_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.K7053Gfs*4|1|0.03|ENSG00000181143|chr19:8955613-8955614|-/CACTTCTCACC|frameshift_variant;MUC16|p.V9721Afs*13|1|0.05|ENSG00000181143|chr19:8947608-8947609|-/AATTTGAG|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2887573242188	2	519.261122	1036.50769	0.71999	0.00037386	0.22848	0.00011864	0.94847	0.0004925	519.2611114112046	54.567	0.48919	54.567	54.322	54.811	0					29	17	2	0	0	0	0.20651	1	12955	12955		26.884	9.9414	1	583250			27800	7225	16025	16026	34362	34362					-0.00910259893203147
LTWDTSITT	9	Unmodified	_LTWDTSITT_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.K7053Gfs*4|1|0.03|ENSG00000181143|chr19:8955613-8955614|-/CACTTCTCACC|frameshift_variant;MUC16|p.V9721Afs*13|1|0.05|ENSG00000181143|chr19:8947608-8947609|-/AATTTGAG|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2888793945312	2	519.261122	1036.50769	0.60756	0.00031548	-0.24522	-0.00012733	0.36234	0.00018815	519.2610673431177	54.666	0.48323	54.65	54.389	54.872	-0.015919					29	16	2	0	0	0	0.20651	1	12975	12975		26.884	3.7352	1	817980			27801	7225	16025	16026	34363	34363					-0.00910259893203147
LTWGWATVD	9	Unmodified	_LTWGWATVD_					0	0	0			REV__ENST00000433861.6_2_3:9773506-9775843:+|nuORF	REV__ENST00000433861.6_2_3:9773506-9775843:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3082275390625	2	524.758549	1047.50255	0.65089	0.00034156	2.5653	0.0013461	3.2161	0.0016877	524.7597323571642	57.212	0.3637	57.212	56.986	57.35	0					15	13	2	0	0	0	0.20651	1	13777	13777		14.838	3.198	1	140850	+		27802	20974	16026	16027	34364	34364					-0.019305189651277033
LTWLNTVLKL	10	Unmodified	_LTWLNTVLKL_					0	0	0		ENST00000265138.3_1_5:90665380-90665422:-|nuORF	ENST00000265138.3_1_5:90665380-90665422:-|nuORF	ENST00000265138.3_1_5:90665380-90665422:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	400.9147033691406	3	400.916541	1199.72779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.74	1	103.74	103.24	104.24	-0.0011139								0	0	0	0.38065	1	27584	27584		1.9064	0.1641	1				27803	9037	16027	16028	34365	34365					0.1359201050502179
LTWLWVPLE	9	Unmodified	_LTWLWVPLE_					0	0	0		ENST00000404056.1_1_22:24177016-24177280:-|nuORF	ENST00000404056.1_1_22:24177016-24177280:-|nuORF	ENST00000404056.1_1_22:24177016-24177280:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.8251342773438	2	578.823692	1155.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.603	1	13.504	13.004	14.004	-0.099291								0	0	0	0.25631	1	476	476		4.3292	0.38484	1				27804	10211	16028	16029	34366	34366					0.06124077033814501
LTWSSCRS	8	Unmodified	_LTWSSCRS_					0	0	0		ENST00000354914.7_1_8:27849921-27850167:-|nuORF	ENST00000354914.7_1_8:27849921-27850167:-|nuORF	ENST00000354914.7_1_8:27849921-27850167:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.7608642578125	2	470.221277	938.428001	0.32508	0.00015286	0.40649	0.00019114	0.73157	0.000344	470.2213075213541	65.773	0.55003	65.773	65.518	66.068	0					33	19	2	0	0	0	0.34092	1	16484	16484		8.5933	2.8329	1	301320			27805	9603	16029	16030	34367	34367					-0.04367605048173573
LTWTLLAL	8	Unmodified	_LTWTLLAL_					0	0	0			REV__nc|ENSG00000106327|Q9UP52-2|TFR2	REV__nc|ENSG00000106327|Q9UP52-2|TFR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7777099609375	2	465.786579	929.558604	0.41157	0.0001917	0.44721	0.00020831	0.85878	0.00040001	465.78676019208797	84.919	0.63903	84.906	84.557	85.196	-0.01284					46	25	2	0	0	0	0.42758	1	22201	22201		13.508	1.8676	1	241100	+		27806	14514	16030	16031	34368	34368					0.09100733942329953
LTYASPTEVSF	11	Unmodified	_LTYASPTEVSF_					0	0	0		ENST00000453025.1_1_1:21752008-21754429:-|nuORF	ENST00000453025.1_1_1:21752008-21754429:-|nuORF	ENST00000453025.1_1_1:21752008-21754429:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.2855224609375	2	607.800611	1213.58667	0.39634	0.0002409	0.86431	0.00052533	1.2607	0.00076623	607.8011209620632	45.986	0.19741	46.051	45.976	46.174	0.065048					8	6	2	0	0	0	0.33149	1	10304	10304		5.2969	1.3525	1	111670			27807	10663	16031	16032	34369	34369					-0.011580326589182732
LTYCTRCTSN	10	Unmodified	_LTYCTRCTSN_					0	0	0			REV__ENST00000517545.5_1_8:17782659-17782707:+|nuORF	REV__ENST00000517545.5_1_8:17782659-17782707:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.3373413085938	2	581.254991	1160.49543	0.2806	0.0001631	1.0835	0.00062981	1.3641	0.0007929	581.2556044972117	24.642	0.43387	24.586	24.315	24.748	-0.055931					21	14	2	0	0	0	0.32139	1	3760	3760		0.30703	0	1	40347	+		27808	21854	16032	16033	34370	34370					-0.07839942899522612
LTYEFVKQK	9	Unmodified	_LTYEFVKQK_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51641614-51641740:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3239135742188	2	578.324057	1154.63356	-0.093552	-5.4103E-05	0.060611	3.5053E-05	-0.032941	-1.9051E-05	578.3239976664321	34.327	0.59798	34.327	34.074	34.672	0					45	20	3	0	0	0	5.7257E-07	1	6760	6760		157.8	106.17	1	596600			27809	7110	16033	16034	34371	34371					0.062428716828890174
LTYEFVKQK	9	Unmodified	_LTYEFVKQK_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51641614-51641740:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.7811889648438	2	578.324057	1154.63356	0.083199	4.8116E-05	-0.23746	-0.00013733	-0.15427	-8.9215E-05	578.323788857407	34.22	0.58366	34.286	34.012	34.595	0.06636					47	20	3	0	0	0	1.7475E-06	1	6691	6691		157.8	111.77	1	603860			27810	7110	16033	16034	34372	34372					0.062428716828890174
LTYEFVKQK	9	Unmodified	_LTYEFVKQK_					0	0	0		ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51641614-51641740:+|nuORF	ENSG00000179222|ENST00000326587|MAGED1	ENSG00000179222|ENST00000326587|MAGED1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3239135742188	2	578.324057	1154.63356	0.10271	5.9402E-05	-0.096552	-5.5839E-05	0.006162	3.5636E-06	578.3239270580915	34.105	0.60992	34.172	33.967	34.577	0.0667					47	21	3	0	0	0	9.2305E-05	1	6693	6693		142.08	94.331	1	603960			27811	7110	16033	16034	34373	34373					0.062428716828890174
LTYFLLDLSF	10	Unmodified	_LTYFLLDLSF_					0	0	0		OR5D13|p.S190Lfs*20|1|0.04|ENSG00000279761|chr11:55774003-55774004|-/A|frameshift_variant;OR5D13|p.A189Vfs*21|1|0.04|ENSG00000279761|chr11:55774002-55774003|-/T|frameshift_variant;ENSG00000279761|ENST00000623930|OR5D13	OR5D13|p.S190Lfs*20|1|0.04|ENSG00000279761|chr11:55774003-55774004|-/A|frameshift_variant	OR5D13|p.S190Lfs*20|1|0.04|ENSG00000279761|chr11:55774003-55774004|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.5715637207031	3	411.225152	1230.65363	0.19148	7.8741E-05	-2.8772	-0.0011832	-2.6857	-0.0011044	411.22356137280553	32.793	0.24403	32.848	32.758	33.002	0.055309					12	8	2	0	0	0	0.40085	1	6285	6285		3.3196	0	1	49038			27812	8752	16034	16035	34374	34374					0.047526226228455926
LTYFMICLFV	10	Unmodified	_LTYFMICLFV_					0	0	0			REV__ENST00000306052.10_1_1:53712440-53712632:-|nuORF	REV__ENST00000306052.10_1_1:53712440-53712632:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.3193969726562	2	625.321614	1248.62867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.06	1	100.06	99.564	100.56	0								0	0	0	0.38126	1	26750	26750		1.6526	0	1		+		27813	19856	16035	16036	34375	34375					0.014305282242503381
LTYGRLQEL	9	Unmodified	_LTYGRLQEL_					0	0	0		nc|ENSG00000070985|Q9NZQ8-3|TRPM5;ENSG00000070985|ENST00000696290|TRPM5;nc|ENSG00000070985|Q9NZQ8-2|TRPM5	nc|ENSG00000070985|Q9NZQ8-3|TRPM5	nc|ENSG00000070985|Q9NZQ8-3|TRPM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8245849609375	2	546.806031	1091.59751	0.58549	0.00032015	-0.050388	-2.7552E-05	0.5351	0.00029259	546.8059344981406	51.88	0.47326	51.93	51.729	52.202	0.050571					30	16	2	0	0	0	0.16283	1	12186	12186		29.082	2.8134	1	289320			27814	947	16036	16037	34376	34376					0.05537414506034111
LTYLRGKEK	9	Unmodified	_LTYLRGKEK_					0	0	0			REV__ENST00000326361.7_2_3:179046085-179047420:+|nuORF	REV__ENST00000326361.7_2_3:179046085-179047420:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.7779541015625	2	554.329673	1106.64479	0.14249	7.8984E-05	0.3263	0.00018088	0.46879	0.00025986	554.3293262101741	17.674	0.34274	17.557	17.414	17.757	-0.11739					16	11	2	0	0	0	0.25622	1	1734	1734		7.2892	2.96	1	46851	+		27815	20001	16037	16038	34377	34377					0.09573693777042536
LTYLTKKNLD	10	Unmodified	_LTYLTKKNLD_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.5667419433594	3	403.567689	1207.68124	-0.39223	-0.00015829	-2.1966	-0.00088646	-2.5888	-0.0010448	403.5666166099497	14.875	0.7057	14.875	14.448	15.154	0					60	24	4	0	0	0	0.40262	1	892	892		1.4551	0	1	90323	+		27816	16110	16038	16039	34378	34378					0.08570525883078517
LTYNKFAEID	10	Unmodified	_LTYNKFAEID_					0	0	0			REV__ENST00000533297.1_1_11:111896132-111933256:+|nuORF	REV__ENST00000533297.1_1_11:111896132-111933256:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.5268249511719	3	405.208161	1212.60265	-0.348	-0.00014101	-4.1444	-0.0016794	-4.4924	-0.0018204	405.2065897765955	15.38	0.81025	15.38	14.981	15.791	0					73	27	4	0	0	0	0.32137	1	942	942		1.7423	0.14999	1	39600	+		27817	16510	16039	16040	34379	34379					0.004856735779867449
LTYPLHWFL	9	Unmodified	_LTYPLHWFL_					0	0	0		CON__P28800	CON__P28800	CON__P28800	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8369750976562	2	595.32386	1188.63317	0.57987	0.00034521	-1.8183	-0.0010825	-1.2384	-0.00073726	595.3224294074279	53.236	0.76465	53.236	53.012	53.776	0					54	28	3	0	0	0	0.24913	1	12538	12538		7.9102	0	1	572290		+	27818	219	16040	16041	34380	34380					0.04639496753702588
LTYQEVLS	8	Unmodified	_LTYQEVLS_					0	0	0		ENSG00000185386|ENST00000330651|MAPK11	ENSG00000185386|ENST00000330651|MAPK11	ENSG00000185386|ENST00000330651|MAPK11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.73406982421875	2	476.752933	951.491313	0.34292	0.00016349	-0.41252	-0.00019667	-0.069607	-3.3185E-05	476.75267432905844	71.097	0.59591	71.072	70.833	71.429	-0.024864					32	21	2	0	0	0	0.32886	1	18128	18128		15.847	0	1	400330			27819	7530	16041	16042	34381	34381					0.0136265894071812
LTYRDGFN	8	Unmodified	_LTYRDGFN_					0	0	0		nc|ENSG00000089692|P18627-2|LAG3;ENSG00000089692|ENST00000203629|LAG3;ENST00000538079.1_1_12:6882155-6887174:+|nuORF	nc|ENSG00000089692|P18627-2|LAG3	nc|ENSG00000089692|P18627-2|LAG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.3056640625	2	493.240524	984.466495	0.3634	0.00017924	-2.9073	-0.001434	-2.5439	-0.0012547	493.23875426027166	70.134	0.36628	70.112	69.937	70.304	-0.022087					25	12	3	0	0	0	0.31617	1	17750	17750		20.454	1.0146	1	109010			27820	1362	16042	16043	34382	34382					-0.026359761420053474
LTYRDGFNVSI	11	Unmodified	_LTYRDGFNVSI_					0	0	0		nc|ENSG00000089692|P18627-2|LAG3;ENSG00000089692|ENST00000203629|LAG3;ENST00000538079.1_1_12:6882155-6887174:+|nuORF	nc|ENSG00000089692|P18627-2|LAG3	nc|ENSG00000089692|P18627-2|LAG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.25048828125	3	428.890944	1283.651	-0.041397	-1.7755E-05	1.639	0.00070295	1.5976	0.0006852	428.8912512919659	49.65	0.59226	49.65	49.516	50.108	0					28	21	2	0	0	0	0.3299	1	11550	11550		6.6235	0	1	163300			27821	1362	16043	16044	34383	34383					0.020521672179029338
LTYSDRVER	9	Unmodified	_LTYSDRVER_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.2445068359375	2	569.796195	1137.57784	-0.11065	-6.3047E-05	0.54912	0.00031288	0.43847	0.00024984	569.796331249358	13.83	0.31531	13.764	13.602	13.917	-0.066068					19	10	2	0	0	0	0.26031	1	565	565		3.5965	3.5965	1	133160	+		27822	13977	16044	16045	34384	34384					0.01455038495282679
LTYSNCFSL	9	Unmodified	_LTYSNCFSL_					0	0	0			REV__ENSG00000204442|ENST00000375915|NALF1	REV__ENSG00000204442|ENST00000375915|NALF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7999877929688	2	524.244418	1046.47428	0.56505	0.00029623	-1.4255	-0.00074729	-0.86042	-0.00045107	524.24342707135	71.927	0.38631	71.927	71.69	72.076	0					24	13	3	0	0	0	0.1939	1	18302	18302		13.042	0	1	140700	+		27823	18944	16045	16046	34385	34385					-0.04709584936745159
LVAARAVLA	9	Unmodified	_LVAARAVLA_					0	0	0			REV__ENSG00000258839|ENST00000555147|MC1R	REV__ENSG00000258839|ENST00000555147|MC1R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.787841796875	2	442.28982	882.565087	0.19005	8.4058E-05	-0.45633	-0.00020183	-0.26627	-0.00011777	442.28953638032806	37.866	0.62585	37.957	37.527	38.153	0.090881					29	22	2	0	0	0	0.23783	1	7801	7801		12.532	2.3482	1	234760	+		27824	19271	16046	16047	34386	34386					0.11910671893690505
LVAASWACAF	10	Unmodified	_LVAASWACAF_					0	0	0		nc|ENSG00000159961|P47888|OR3A3;ENSG00000159961|ENST00000641141|OR3A3;ENSG00000180090|ENST00000323404|OR3A1	nc|ENSG00000159961|P47888|OR3A3	nc|ENSG00000159961|P47888|OR3A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.3234252929688	2	519.757495	1037.50044	0.36761	0.00019107	2.3748	0.0012343	2.7425	0.0014254	519.7611532764447	70.224	0.22806	70.202	70.049	70.277	-0.022087					11	7	2	0	0	0	0.31395	1	17789	17789		12.532	1.4171	1	65522			27825	5430	16047	16048	34387	34387					-0.01681270974609106
LVAEKITK	8	Unmodified	_LVAEKITK_					0	0	0			REV__ENST00000438116.2_1_22:40983448-40983622:-|nuORF	REV__ENST00000438116.2_1_22:40983448-40983622:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2261962890625	2	451.289485	900.564418	0.2278	0.0001028	-0.20356	-9.1863E-05	0.02424	1.0939E-05	451.28930131877615	37.414	0.81328	37.507	37.275	38.089	0.093018					67	29	3	0	0	0	0.32099	1	7744	7744		19.257	0	1	1424800	+		27826	21020	16048	16049	34388	34388					0.11015832453983876
LVAKPEPGSF	10	Unmodified	_LVAKPEPGSF_					0	0	0			REV__nc|ENSG00000161905|P16050-2|ALOX15	REV__nc|ENSG00000161905|P16050-2|ALOX15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.245849609375	2	522.78985	1043.56515	0.44602	0.00023318	-0.4849	-0.0002535	-0.038881	-2.0327E-05	522.7894157661597	67.347	0.71141	67.425	67.122	67.834	0.078041					51	24	3	0	0	0	0.29519	1	16836	16836		15.847	2.8047	1	260630	+		27827	16954	16049	16050	34389	34389					0.04510627103036313
LVALLPAPAL	10	Unmodified	_LVALLPAPAL_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.771240234375	2	489.323328	976.632104	0.55643	0.00027228	-2.5162	-0.0012312	-1.9598	-0.00095897	489.3219889298561	53.961	0.29961	53.961	53.806	54.105	0					13	10	2	0	0	0	0.30586	1	12766	12766		7.9102	0	1	123140			27828	3168	16050	16051	34390	34390					0.14285282384798847
LVALSYHLS	9	Unmodified	_LVALSYHLS_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;ENST00000498302.1_1_1:233296026-233314909:-|nuORF;ENST00000530174.1_1_11:65392695-65393791:+|nuORF;nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF;ENSG00000197136|ENST00000355703|PCNX3	ENSG00000135749|ENST00000258229|PCNX2;ENSG00000197136|ENST00000355703|PCNX3	ENSG00000135749|ENST00000258229|PCNX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.31304931640625	2	501.784567	1001.55458	0.39592	0.00019866	-0.71185	-0.0003572	-0.31593	-0.00015853	501.7845031549552	44.399	0.92251	44.474	43.961	44.883	0.07505					54	33	2	0	0	0	0.23783	1	9911	9911		18.135	0	1	399360			27829	3900;7934	16051	16052	34391	34391					0.05386644448606148
LVALSYHLS	9	Unmodified	_LVALSYHLS_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;ENST00000498302.1_1_1:233296026-233314909:-|nuORF;ENST00000530174.1_1_11:65392695-65393791:+|nuORF;nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF;ENSG00000197136|ENST00000355703|PCNX3	ENSG00000135749|ENST00000258229|PCNX2;ENSG00000197136|ENST00000355703|PCNX3	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	501.784567	1001.55458	0.58714	0.00029462	-0.82625	-0.0004146	-0.23911	-0.00011998	501.7844525418821	44.604	0.55251	44.604	44.383	44.935	0	0.080228	3.7682E-05	NaN	18.135	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395880			27830	3900;7934	16051	16052							0.05386644448606148
LVALSYHLS	9	Unmodified	_LVALSYHLS_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;ENST00000498302.1_1_1:233296026-233314909:-|nuORF;ENST00000530174.1_1_11:65392695-65393791:+|nuORF;nc|ENSG00000135749|A6NKB5-5|PCNX2;ENST00000475463.6_1_1:233201380-233353905:-|nuORF;ENSG00000197136|ENST00000355703|PCNX3	ENSG00000135749|ENST00000258229|PCNX2;ENSG00000197136|ENST00000355703|PCNX3	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	501.784567	1001.55458	0.50709	0.00025445	-1.005	-0.00050431	-0.49794	-0.00024986	501.7844153737629	44.424	0.78045	44.493	44.199	44.979	0.068569	-0.030494	-0.00014174	NaN	18.135	45	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354200			27831	3900;7934	16051	16052							0.05386644448606148
LVASDWDNDS	10	Unmodified	_LVASDWDNDS_					0	0	0			REV__ENSG00000130487|ENST00000648057|KLHDC7B	REV__ENSG00000130487|ENST00000648057|KLHDC7B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7953491210938	2	561.240918	1120.46728	0.4155	0.0002332	-1.7672	-0.00099181	-1.3517	-0.00075861	561.2397311864798	86.544	0.58669	86.535	86.256	86.843	-0.0090103					38	22	2	0	0	0	0.318	1	22812	22812		7.2892	1.9923	1	209540	+		27832	15460	16052	16053	34392	34392					-0.08813226283609765
LVATETPCYI	10	Unmodified	_LVATETPCYI_					0	0	0			REV__ENST00000528172.1_1_11:4232759-4233284:-|nuORF	REV__ENST00000528172.1_1_11:4232759-4233284:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.7546997070312	2	555.281	1108.54745	0.36689	0.00020373	-0.93619	-0.00051985	-0.5693	-0.00031612	555.2802755382488	71.466	0.34879	71.466	71.233	71.582	0					17	11	2	0	0	0	0.31267	1	18177	18177		14.838	0.93222	1	267580	+		27833	21982	16053	16054	34393	34393					-0.0024845621412623586
LVATIHFL	8	Unmodified	_LVATIHFL_					0	0	0		ENSG00000188984|ENST00000359318|AADACL3	ENSG00000188984|ENST00000359318|AADACL3	ENSG00000188984|ENST00000359318|AADACL3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2645263671875	2	457.278921	912.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.528	1	84.515	84.015	85.015	-0.01284								0	0	0	0.36169	1	22151	22151		9.3474	0	1				27834	7789	16054	16055	34394	34394					0.08351867145142933
LVATVSALK	9	Unmodified	_LVATVSALK_					0	0	0		ENST00000413059.1_1_X:57419493-57419883:-|nuORF	ENST00000413059.1_1_X:57419493-57419883:-|nuORF	ENST00000413059.1_1_X:57419493-57419883:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.28948974609375	2	451.289485	900.564418	0.23511	0.0001061	-0.2575	-0.00011621	-0.022396	-1.0107E-05	451.2892893480781	37.475	0.81917	37.563	37.305	38.124	0.087406					72	29	4	0	0	0	0.12642	1	7701	7701		34.402	2.3642	1	1462400			27835	10284	16055	16056	34395	34395					0.11015832453983876
LVAVIGPVG	9	Unmodified	_LVAVIGPVG_					0	0	0		ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.7669372558594	2	412.765646	823.516739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.692	1	31.735	31.235	32.235	0.042364								0	0	0	0.26258	1	5953	5953		2.3027	0	1				27836	527	16056	16057	34396	34396					0.09792178253826478
LVAVLMLCSL	10	Unmodified	_LVAVLMLCSL_					0	0	0			REV__ENSG00000275718|ENST00000617897|CCL15	REV__ENSG00000275718|ENST00000617897|CCL15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2864990234375	2	531.308506	1060.60246	0.64919	0.00034492	0.5897	0.00031331	1.2389	0.00065823	531.3090645820199	38.767	0.53223	38.866	38.652	39.184	0.099407					32	18	2	0	0	0	0.31165	1	8184	8184		15.847	5.0477	1	296630	+		27837	19333	16057	16058	34397	34397					0.0745825905280526
LVAVQILLS	9	Unmodified	_LVAVQILLS_					0	0	0		ENST00000399070.3_2_18:32886564-32887857:+|nuORF	ENST00000399070.3_2_18:32886564-32887857:+|nuORF	ENST00000399070.3_2_18:32886564-32887857:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7925109863281	2	478.312961	954.611368	0.37192	0.00017789	0.20296	9.708E-05	0.57488	0.00027497	478.3129021147906	52.489	1.0132	52.54	52.254	53.267	0.050575					53	36	2	0	0	0	0.19839	1	12478	12478		21.747	0	1	792040			27838	10174	16058	16059	34398	34398					0.13224692005155703
LVAVQILLS	9	Unmodified	_LVAVQILLS_					0	0	0		ENST00000399070.3_2_18:32886564-32887857:+|nuORF	ENST00000399070.3_2_18:32886564-32887857:+|nuORF	ENST00000399070.3_2_18:32886564-32887857:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	478.312961	954.611368	0.21737	0.00010397	0.10423	4.9852E-05	0.32159	0.00015382	478.31290294587734	52.527	0.63605	52.527	52.239	52.875	0	-0.0034032	-6.4184E-05	NaN	15.847	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	821660			27839	10174	16058	16059							0.13224692005155703
LVCKEGILN	9	Unmodified	_LVCKEGILN_					0	0	0		ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7607116699219	2	494.778428	987.542302	0.21879	0.00010825	2.353	0.0011642	2.5718	0.0012725	494.77989083895005	76.526	0.46302	76.579	76.32	76.783	0.053421					20	16	2	0	0	0	0.24471	1	19757	19757		17.113	2.5312	1	68789			27840	7230	16059	16060	34399	34399					0.04803284713909761
LVCPISLFLE	10	Unmodified	_LVCPISLFLE_					0	0	0			REV__ENSG00000166796|ENST00000541669|LDHC	REV__ENSG00000166796|ENST00000541669|LDHC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3192138671875	2	567.317386	1132.62022	0.46259	0.00026244	1.4128	0.00080149	1.8754	0.0010639	567.8192753051193	44.613	1.0902	44.613	44.115	45.206	0					142	39	5	0	0	0	0.1715	1	9867	9867		36.127	0	1	3293000	+		27841	17340	16060	16061	34400	34400					0.059212975792888756
LVCPWIIEKL	10	Unmodified	_LVCPWIIEKL_					0	0	0			REV__ENST00000509061.5_2_4:113558803-113565626:+|nuORF	REV__ENST00000509061.5_2_4:113558803-113565626:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2384948730469	3	405.238627	1212.69405	0.029306	1.1876E-05	-0.99666	-0.00040389	-0.96736	-0.00039201	405.2385624516901	21.084	1.5948	21.084	20.594	22.189	0					186	56	6	0	0	0	0.37823	1	2890	2890		7.4771	0.84669	1	8354000	+		27842	21783	16061	16062	34401	34401					0.09621265741634488
LVCQRGPKG	9	Unmodified	_LVCQRGPKG_					0	0	0		ENST00000471919.1_1_6:116988065-116989847:-|nuORF;ENST00000368576.7_1_6:116988324-116989847:-|nuORF	ENST00000471919.1_1_6:116988065-116989847:-|nuORF	ENST00000471919.1_1_6:116988065-116989847:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2774963378906	2	479.268561	956.52257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.82	1	72.82	72.32	73.32	0								0	0	0	0.24715	1	18582	18582		7.2892	0	1				27843	9760	16062	16063	34402	34402					0.04256953493825222
LVDGKSTHV	9	Unmodified	_LVDGKSTHV_					0	0	0		ENSG00000131437|ENST00000403231|KIF3A;nc|ENSG00000131437|Q9Y496|KIF3A	ENSG00000131437|ENST00000403231|KIF3A	ENSG00000131437|ENST00000403231|KIF3A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2640380859375	2	478.263999	954.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.285	1	68.285	67.785	68.785	0								0	0	0	0.23091	1	17194	17194		12.532	0.89125	1				27844	3565	16063	16064	34403	34403					0.034368834091424105
LVDKHKVKRQR	11	Unmodified	_LVDKHKVKRQR_					0	0	0		nc|ENSG00000175029|P56545|CTBP2	nc|ENSG00000175029|P56545|CTBP2	nc|ENSG00000175029|P56545|CTBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.9591979980469	3	469.628276	1405.863	0.18119	8.5093E-05	-0.97387	-0.00045736	-0.79268	-0.00037226	469.62779220002864	88.916	0.49698	88.916	88.487	88.984	0					37	22	2	0	0	0	0.33348	1	23515	23515		0.40827	0.31342	1	218410			27845	12849	16064	16065	34404	34404					0.17630303419355187
LVDLSYLPS	9	Unmodified	_LVDLSYLPS_					0	0	0			REV__ENST00000554375.5_1_14:76644623-76668191:+|nuORF	REV__ENST00000554375.5_1_14:76644623-76668191:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.76556396484375	2	503.776408	1005.53826	0.21821	0.00010993	2.3104	0.0011639	2.5286	0.0012738	503.7783145364042	23.024	0.72382	22.979	22.501	23.225	-0.044867					73	25	4	0	0	0	0.25314	1	3366	3366		15.847	1.0089	1	112660	+		27846	14034	16065	16066	34405	34405					0.03571518491855841
LVDQKVQLF	9	Unmodified	_LVDQKVQLF_					0	0	0			REV__ENST00000305368.8_1_5:111600591-111754802:-|nuORF	REV__ENST00000305368.8_1_5:111600591-111754802:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3175659179688	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113	1	112.98	112.48	113.48	-0.017303								0	0	0	0.25858	1	29380	29380		3.5965	1.098	1		+		27847	15422	16066	16067	34406	34406					0.08222889028479585
LVDRITALRC	10	Unmodified	_LVDRITALRC_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3319091796875	2	580.334433	1158.65431	0.2695	0.0001564	-1.9947	-0.0011576	-1.7252	-0.0010012	580.332974454481	91.275	0.29482	91.275	91.239	91.534	0					32	22	2	0	0	0	0.40262	1	24225	24225		2.9952	0.71247	1	270680			27848	12761	16067	16068	34407	34407					0.08133138790890371
LVDSVFQV	8	Unmodified	_LVDSVFQV_					0	0	0		ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.28387451171875	2	453.750193	905.485833	0.24912	0.00011304	0.26029	0.00011811	0.50941	0.00023114	453.7502560897758	88.921	0.35269	88.921	88.698	89.051	-0.00080872					20	13	2	0	0	0	0.34272	1	23451	23451		4.3292	0	1	70844			27849	8670	16068	16069	34408	34408					0.029309801489148413
LVDTRVGRAD	10	Unmodified	_LVDTRVGRAD_					0	0	0		ENST00000569930.1_1_16:2133412-2138608:+|nuORF	ENST00000569930.1_1_16:2133412-2138608:+|nuORF	ENST00000569930.1_1_16:2133412-2138608:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.304443359375	2	551.304187	1100.59382	0.39771	0.00021926	0.15301	8.4353E-05	0.55071	0.00030361	551.3041837066548	20.282	0.45658	20.282	20.113	20.57	0					37	16	3	0	0	0	0.39227	1	2488	2488		4.897	0	1	162740			27850	12015	16069	16070	34409	34409					0.047547447321903746
LVDTTEQSKI	10	Unmodified	_LVDTTEQSKI_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.7933349609375	2	567.306061	1132.59757	0.68534	0.0003888	0.060183	3.4142E-05	0.74552	0.00042294	567.3060653567833	32.235	1.1915	32.29	32.007	33.199	0.055309					107	42	4	0	0	0	0.35637	1	6297	6297		11.495	0	1	2182600			27851	8266	16070	16071	34410	34410					0.03657369715392633
LVDVHNLIF	9	Unmodified	_LVDVHNLIF_					0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8219604492188	2	535.305667	1068.59678	0.9172	0.00049098	-0.20631	-0.00011044	0.71089	0.00038054	535.305384706178	56.073	1.7998	56.054	55.29	57.09	-0.019081					163	65	4	0	0	0	0.20344	1	13709	13709		23.148	2.6948	1	5920000	+		27852	15710	16071	16072	34411	34411					0.06522619856991696
LVDVSLQQF	9	Unmodified	_LVDVSLQQF_					0	0	0			REV__nc|ENSG00000114670|Q8NG66-2|NEK11	REV__nc|ENSG00000114670|Q8NG66-2|NEK11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7784423828125	2	524.787307	1047.56006	0.51418	0.00026983	0.30957	0.00016246	0.82375	0.00043229	524.7876081076562	71.766	0.48907	71.822	71.568	72.057	0.056572					27	17	2	0	0	0	0.17787	1	18319	18319		26.884	1.4843	1	182970	+		27853	14842	16072	16073	34412	34412					0.038183232404207956
LVEAIMLL	8	Unmodified	_LVEAIMLL_					0	0	0		ENST00000534255.1_1_8:145193835-145194452:+|nuORF;ENSG00000235173|ENST00000347708|HGH1	ENST00000534255.1_1_8:145193835-145194452:+|nuORF	ENST00000534255.1_1_8:145193835-145194452:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2749328613281	2	451.274989	900.535426	0.29327	0.00013235	-0.53305	-0.00024055	-0.23978	-0.00010821	451.27465892996247	71.041	0.87682	71.017	70.493	71.37	-0.024872					52	31	2	0	0	0	0.41716	1	18050	18050		17.087	1.3183	1	972270			27854	8493	16073	16074	34413	34413					0.08117971833360116
LVEEMEHFGQ	10	Unmodified	_LVEEMEHFGQ_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1;ENST00000491536.5_1_1:12024755-12035393:+|nuORF	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.2037048339844	3	406.853501	1217.53867	-0.13627	-5.5442E-05	3.9688	0.0016147	3.8326	0.0015593	406.855399246337	17.675	0.80557	17.675	17.272	18.077	0					58	27	3	0	0	0	0.39745	1	1759	1759		1.9064	0	1	117900			27855	1220	16074	16075	34414	34414					-0.06139429850600209
LVEEPLFFS	9	Unmodified	_LVEEPLFFS_					0	0	0		ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-4|MEI1;nc|ENSG00000167077|Q5TIA1-6|MEI1	ENSG00000167077|ENST00000401548|MEI1	ENSG00000167077|ENST00000401548|MEI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7820434570312	2	540.784233	1079.55391	0.61449	0.00033231	-3.8485	-0.0020812	-3.234	-0.0017489	540.7820733627792	29.831	0.50754	29.831	29.659	30.167	0					39	17	3	0	0	0	0.11517	1	5427	5427		36.044	5.8194	1	370950			27856	6144	16075	16076	34415	34415					0.01731805008921583
LVEEQENKF	9	Unmodified	_LVEEQENKF_					0	0	0		ENSG00000177938|ENST00000317658|CAPZA3	ENSG00000177938|ENST00000317658|CAPZA3	ENSG00000177938|ENST00000317658|CAPZA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2948608398438	2	568.285128	1134.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.905	1	66.905	66.405	67.405	0								0	0	0	0.21726	1	16772	16772		16.942	1.0951	1				27857	7025	16076	16077	34416	34416					-0.00619185973164349
LVEEREYTLM	10	Unmodified	_LVEEREYTLM_					0	0	0			REV__ENSG00000012232|ENST00000220562|EXTL3	REV__ENSG00000012232|ENST00000220562|EXTL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2685546875	3	428.216439	1281.62749	-0.099816	-4.2743E-05	0.41164	0.00017627	0.31182	0.00013353	428.5509381413119	38.015	0.53805	38.112	37.899	38.437	0.097527					29	18	2	0	0	0	0.31899	1	7960	7960		7.4771	2.4295	1	238210	+		27858	13440	16077	16078	34417	34417					-0.0020601461094429396
LVEEREYTLM	10	Unmodified	_LVEEREYTLM_					0	0	0			REV__ENSG00000012232|ENST00000220562|EXTL3	REV__ENSG00000012232|ENST00000220562|EXTL3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	428.216439	1281.62749	-0.12926	-5.5351E-05	0.92454	0.0003959	0.79528	0.00034055	428.2165961308298	38.197	0.51189	38.197	38.007	38.518	0	0.023777	0.00051701	NaN	4.7159	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171300	+		27859	13440	16077	16078							-0.0020601461094429396
LVEEREYTLM	10	Unmodified	_LVEEREYTLM_					0	0	0			REV__ENSG00000012232|ENST00000220562|EXTL3	REV__ENSG00000012232|ENST00000220562|EXTL3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	428.216439	1281.62749	-0.0083676	-3.5831E-06	0.4976	0.00021308	0.48923	0.0002095	428.21661944743767	38.119	0.41624	38.21	37.983	38.399	0.090885	0.036786	-3.1464E-05	NaN	4.7159	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187260	+		27860	13440	16077	16078							-0.0020601461094429396
LVEHVRIH	8	Unmodified	_LVEHVRIH_					0	0	0		ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	ENSG00000197961|ENST00000320451|ZNF121	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7650451660156	2	501.795801	1001.57705	0.76309	0.00038292	-1.494	-0.00074969	-0.73092	-0.00036677	501.7948178252371	36.367	0.46082	36.453	36.272	36.733	0.08625					30	15	2	0	0	0	0.32886	1	7405	7405		21.747	2.3076	1	194360			27861	8019	16078	16079	34418	34418					0.07632288636898465
LVEKKLSF	8	Unmodified	_LVEKKLSF_					0	0	0			REV__ENSG00000111339|ENST00000228936|ART4	REV__ENSG00000111339|ENST00000228936|ART4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.3065490722656	2	482.29731	962.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.73	1	78.73	78.23	79.23	0								0	0	0	0.36169	1	20383	20383		9.3474	0	1		+		27862	14718	16079	16080	34419	34419					0.09728118971042932
LVEKKLSF	8	Unmodified	_LVEKKLSF_					0	0	0			REV__ENSG00000111339|ENST00000228936|ART4	REV__ENSG00000111339|ENST00000228936|ART4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.3064880371094	2	482.29731	962.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.805	1	78.775	78.275	79.275	-0.030434								0	0	0	0.36169	1	20389	20389		9.3474	0	1		+		27863	14718	16079	16080	34420	34420					0.09728118971042932
LVEKPQLLS	9	Unmodified	_LVEKPQLLS_					0	0	0			REV__nc|ENSG00000197321|O95425-2|SVIL	REV__nc|ENSG00000197321|O95425-2|SVIL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.8023071289062	2	513.813325	1025.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.481	1	66.481	65.981	66.981	0								0	0	0	0.23367	1	16642	16642		11.64	2.2929	1		+		27864	18727	16080	16081	34421	34421					0.10031486654179389
LVELQEQTK	9	Unmodified	_LVELQEQTK_					0	0	0			REV__nc|ENSG00000127946|O00291-3|HIP1	REV__nc|ENSG00000127946|O00291-3|HIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8008422851562	2	544.303321	1086.59209	0.32796	0.00017851	-2.3326	-0.0012697	-2.0047	-0.0010912	544.3021194631817	25.4	0.46416	25.344	25.074	25.539	-0.055931					19	15	2	0	0	0	0.25706	1	4060	4060		6.7232	0.96273	1	117070	+		27865	15355	16081	16082	34422	34422					0.05225690923566617
LVEMLQCESYK	11	Unmodified	_LVEMLQCESYK_					0	0	0		nc|ENSG00000151687|Q7Z5J8-3|ANKAR;nc|ENSG00000151687|Q7Z5J8-2|ANKAR;ENSG00000151687|ENST00000684021|ANKAR	nc|ENSG00000151687|Q7Z5J8-3|ANKAR	nc|ENSG00000151687|Q7Z5J8-3|ANKAR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.7737731933594	3	448.217563	1341.63086	0.27155	0.00012171	0.89648	0.00040182	1.168	0.00052353	448.21822818554875	32.639	0.21141	32.693	32.498	32.71	0.054371					10	7	2	0	0	0	0.3322	1	6204	6204		4.7159	0.83959	1	77709			27866	4974	16082	16083	34423	34423					-0.026290878285863073
LVEMYHPK	8	Unmodified	_LVEMYHPK_					0	0	0			REV__ENST00000484300.1_1_15:57976864-58006874:+|nuORF	REV__ENST00000484300.1_1_15:57976864-58006874:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7825927734375	2	508.76532	1015.51609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.211	1	33.265	32.765	33.765	0.054371								0	0	0	0.35251	1	6411	6411		13.508	2.684	1		+		27867	19244	16083	16084	34424	34424					0.008950155424372497
LVENAERE	8	Unmodified	_LVENAERE_					0	0	0			REV__ENST00000449387.1_1_11:28308937-28309159:-|nuORF	REV__ENST00000449387.1_1_11:28308937-28309159:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2557373046875	2	480.243264	958.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.61	1	70.671	70.171	71.171	0.060783								0	0	0	0.34734	1	17898	17898		15.847	0	1		+		27868	21105	16084	16085	34425	34425					-0.008922973501853448
LVEPDLCDF	9	Unmodified	_LVEPDLCDF_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8554077148438	2	525.74425	1049.47395	0.55823	0.00029349	2.047	0.0010762	2.6053	0.0013697	525.7451277060262	70.461	0.60969	70.437	70.134	70.744	-0.024864					64	21	4	0	0	0	0.21137	1	17868	17868		24.674	12.142	1	583230	+		27869	14878	16085	16086	34426	34426					-0.04881004656613186
LVEPRCLV	8	Unmodified	_LVEPRCLV_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2744445800781	2	464.767863	927.521173	0.32046	0.00014894	-0.367	-0.00017057	-0.046534	-2.1627E-05	464.7675975014299	38.616	1.1836	38.714	38.407	39.591	0.097527					57	42	2	0	0	0	0.34185	1	8247	8247		5.7604	5.7604	1	180050			27870	1001	16086	16087	34427	34427					0.054513194050628044
LVEQFLFVHL	10	Unmodified	_LVEQFLFVHL_					0	0	0			REV__ENSG00000163947|ENST00000296315|ARHGEF3	REV__ENSG00000163947|ENST00000296315|ARHGEF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.5821228027344	3	415.572775	1243.69649	-0.22109	-9.1878E-05	2.8442	0.001182	2.6231	0.0010901	415.90748667802256	23.404	0.11716	23.404	23.362	23.48	0					5	3	2	0	0	0	0.31942	1	3433	3433		6.1918	2.3155	1	11353	+		27871	17108	16087	16088	34428	34428					0.08439437470951816
LVETNDMRLK	10	Unmodified	_LVETNDMRLK_					0	0	0			REV__MAP3K15|p.E1259*|1|0.27|ENSG00000180815|chrX:19361498-19361499|-/A|frameshift_variant	REV__MAP3K15|p.E1259*|1|0.27|ENSG00000180815|chrX:19361498-19361499|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.88885498046875	3	406.888546	1217.64381	-0.17151	-6.9786E-05	0.24809	0.00010095	0.076581	3.116E-05	406.8889824325737	17.958	1.1901	17.958	17.424	18.614	0					116	40	5	0	0	0	0.37007	1	1821	1821		8.9762	2.7844	1	379940	+		27872	18119	16088	16089	34429	34429					0.04369111345818055
LVETNDMRLK	10	Unmodified	_LVETNDMRLK_					0	0	0			REV__MAP3K15|p.E1259*|1|0.27|ENSG00000180815|chrX:19361498-19361499|-/A|frameshift_variant	REV__MAP3K15|p.E1259*|1|0.27|ENSG00000180815|chrX:19361498-19361499|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.8889465332031	3	406.888546	1217.64381	-0.22443	-9.1318E-05	0.11909	4.8457E-05	-0.10534	-4.2861E-05	406.88899600598216	18.14	1.1462	18.022	17.467	18.614	-0.11739					109	39	5	0	0	0	0.37007	2	1831	1831;1881		8.9762	1.8745	1	404460	+		27873	18119	16088	16089	34430;34431	34430					0.04369111345818055
LVETNDMRLK	10	Unmodified	_LVETNDMRLK_					0	0	0			REV__MAP3K15|p.E1259*|1|0.27|ENSG00000180815|chrX:19361498-19361499|-/A|frameshift_variant	REV__MAP3K15|p.E1259*|1|0.27|ENSG00000180815|chrX:19361498-19361499|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.88885498046875	3	406.888546	1217.64381	-0.25372	-0.00010323	-0.10515	-4.2785E-05	-0.35887	-0.00014602	406.889035779965	18.211	1.1167	18.153	17.62	18.737	-0.058174					113	39	5	0	0	0	0.37007	1	1884	1884		8.9762	2.7844	1	359770	+		27874	18119	16088	16089	34432	34432					0.04369111345818055
LVEVVLQA	8	Unmodified	_LVEVVLQA_					0	0	0		ENSG00000144535|ENST00000325385|DIS3L2;ENST00000433430.5_1_2:233201010-233201337:+|nuORF	ENSG00000144535|ENST00000325385|DIS3L2	ENSG00000144535|ENST00000325385|DIS3L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2886962890625	2	435.768386	869.522219	-0.001781	-7.7608E-07	0.17093	7.4487E-05	0.16915	7.3711E-05	435.7673520904715	92.293	0.11783	92.382	92.32	92.438	0.089195					17	9	3	0	0	0	0.34046	1	24525	24525		14.582	12.004	1	75645			27875	4591	16089	16090	34433	34433					0.08223857045618388
LVFFKVDI	8	Unmodified	_LVFFKVDI_					0	0	0			REV__nc|nan|Q96LT7-2|C9orf72	REV__nc|nan|Q96LT7-2|C9orf72	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.80316162109375	2	490.794404	979.574254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.82	1	22.82	22.32	23.32	0								0	0	0	0.37078	1	3261	3261		5.2307	0	1		+		27876	16408	16090	16091	34434	34434					0.08365020459370953
LVFGKKAD	8	Unmodified	_LVFGKKAD_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.2613220214844	2	439.260728	876.506903	0.21885	9.6134E-05	0.60245	0.00026463	0.82131	0.00036077	439.26088417176896	36.048	0.66308	36.131	35.874	36.537	0.082355					62	23	4	0	0	0	0.28696	1	7351	7351		32.305	0.18852	1	1697000			27877	3184	16091	16092	34435	34435					0.06370990248410635
LVFIEHLL	8	Unmodified	_LVFIEHLL_					0	0	0		ENST00000327726.10_2_19:863239-863407:+|nuORF	ENST00000327726.10_2_19:863239-863407:+|nuORF	ENST00000327726.10_2_19:863239-863407:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.6347351074219	2	492.299853	982.585153	0.33324	0.00016405	-0.13411	-6.6023E-05	0.19913	9.8031E-05	492.2996583734651	92.931	0.48571	93.021	92.728	93.214	0.089195					72	43	2	0	0	0	0.33245	1	24745	24745		19.439	1.304	1	83370			27878	9427	16092	16093	34436	34436					0.09316422833660454
LVFIEHLL	8	Unmodified	_LVFIEHLL_					0	0	0		ENST00000327726.10_2_19:863239-863407:+|nuORF	ENST00000327726.10_2_19:863239-863407:+|nuORF	ENST00000327726.10_2_19:863239-863407:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.6346435546875	2	492.299853	982.585153	0.48321	0.00023788	-0.10921	-5.3764E-05	0.374	0.00018412	492.29969268062814	92.99	0.37939	92.99	92.812	93.191	0.00046539					60	35	2	0	0	0	0.31375	1	24770	24770		26.341	6.9023	1	134140			27879	9427	16092	16093	34437	34437					0.09316422833660454
LVFIMALKG	9	Unmodified	_LVFIMALKG_					0	0	0			REV__nc|ENSG00000174233|O43306-2|ADCY6	REV__nc|ENSG00000174233|O43306-2|ADCY6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.30419921875	2	496.304081	990.59361	0.41687	0.0002069	-0.18064	-8.9651E-05	0.23624	0.00011725	496.30387669744533	74.068	3.1764	74.068	73.191	76.367	0					302	112	4	0	0	0	0.32733	1	19092	19092		4.756	0	1	4670700	+		27880	17821	16093	16094	34438	34438					0.0979365347861858
LVFIMALKG	9	Unmodified	_LVFIMALKG_					0	0	0			REV__nc|ENSG00000174233|O43306-2|ADCY6	REV__nc|ENSG00000174233|O43306-2|ADCY6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3038024902344	2	496.304081	990.59361	0.49459	0.00024547	-0.57538	-0.00028556	-0.080785	-4.0094E-05	496.3037124227817	75.276	2.0084	75.245	74.951	76.96	-0.031487					157	74	3	0	0	0	0.32733	1	19267	19267		4.756	0	1	2632000	+		27881	17821	16093	16094	34439	34439					0.0979365347861858
LVFKNFQLH	9	Unmodified	_LVFKNFQLH_					0	0	0			REV__nc|ENSG00000162073|Q8N4S7-3|PAQR4	REV__nc|ENSG00000162073|Q8N4S7-3|PAQR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.3272094726562	2	573.326934	1144.63931	0.38263	0.00021937	-0.47823	-0.00027418	-0.095602	-5.4811E-05	573.3268976355723	57.911	0.7262	57.997	57.714	58.44	0.085621					59	26	3	0	0	0	0.23775	1	14033	14033		18.135	2.2878	1	949350	+		27882	16963	16094	16095	34440	34440					0.07278014985217851
LVFKNFQLH	9	Unmodified	_LVFKNFQLH_					0	0	0			REV__nc|ENSG00000162073|Q8N4S7-3|PAQR4	REV__nc|ENSG00000162073|Q8N4S7-3|PAQR4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	573.326934	1144.63931	0.38263	0.00021937	-0.47823	-0.00027418	-0.095602	-5.4811E-05	573.3268976355723	57.911	0.7262	57.997	57.714	58.44	0.085621	-0.092072	-0.00017989	NaN	18.135	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	949350	+		27883	16963	16094	16095							0.07278014985217851
LVFKNFQLH	9	Unmodified	_LVFKNFQLH_					0	0	0			REV__nc|ENSG00000162073|Q8N4S7-3|PAQR4	REV__nc|ENSG00000162073|Q8N4S7-3|PAQR4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	573.326934	1144.63931	0.51343	0.00029437	-0.38453	-0.00022046	0.12891	7.3905E-05	573.3268644983171	58.172	0.69889	58.154	57.821	58.52	-0.0172	0.065349	-7.2444E-05	NaN	18.135	64	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	866030	+		27884	16963	16094	16095							0.07278014985217851
LVFLKNSIH	9	Unmodified	_LVFLKNSIH_					0	0	0			REV__nc|ENSG00000196730|P53355-3|DAPK1	REV__nc|ENSG00000196730|P53355-3|DAPK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.281005859375	2	535.821484	1069.62842	0.3563	0.00019091	0.94989	0.00050897	1.3062	0.00069988	535.8218853363019	57.023	0.92192	57.101	56.73	57.652	0.078671					58	33	2	0	0	0	0.24311	1	13888	13888		16.942	5.302	1	1528600	+		27885	18683	16095	16096	34441	34441					0.09638612610933706
LVFLPGFYH	9	Unmodified	_LVFLPGFYH_					0	0	0		nc|ENSG00000089063|Q96A57|TMEM230;ENSG00000089063|ENST00000342308|TMEM230	nc|ENSG00000089063|Q96A57|TMEM230	nc|ENSG00000089063|Q96A57|TMEM230	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7659912109375	2	546.797478	1091.5804	0.73495	0.00040187	3.0861	0.0016874	3.821	0.0020893	546.798897390725	45.899	0.47297	45.964	45.727	46.2	0.065048					25	16	2	0	0	0	0.22431	1	10309	10309		20.871	2.7362	1	363250			27886	1346	16096	16097	34442	34442					0.03827538690916299
LVFPPLTQR	9	Unmodified	_LVFPPLTQR_					0	0	0		ENST00000532758.5_1_8:145137633-145138586:+|nuORF;ENSG00000197858|ENST00000355091|GPAA1	ENST00000532758.5_1_8:145137633-145138586:+|nuORF	ENST00000532758.5_1_8:145137633-145138586:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8219604492188	2	535.821484	1069.62842	0.48231	0.00025843	0.50082	0.00026835	0.98312	0.00052678	535.8217099729166	57.13	0.89986	57.111	56.729	57.629	-0.019081					82	32	3	0	0	0	0.22674	1	13709	13709		22.736	4.6013	1	1834000			27887	8004	16097	16098	34443	34443					0.09638612610933706
LVFPQHSSRA	10	Unmodified	_LVFPQHSSRA_					0	0	0			REV__ENST00000374580.8_1_2:203242016-203329562:+|nuORF	REV__ENST00000374580.8_1_2:203242016-203329562:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.3088989257812	2	571.309272	1140.60399	0.078398	4.4789E-05	-0.53278	-0.00030438	-0.45439	-0.00025959	571.3089541682265	27.546	0.96202	27.524	27.188	28.15	-0.021412					87	33	4	0	0	0	0.22916	1	4703	4703		29.082	4.4077	1	740640	+		27888	20463	16098	16099	34444	34444					0.03931352457425419
LVFPSEIVGK	10	Unmodified	_LVFPSEIVGK_					0	0	0		ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF;ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENST00000484240.1_1_17:44798950-44799232:-|nuORF	ENST00000484240.1_1_17:44798950-44799232:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.821533203125	2	544.82115	1087.62775	0.52022	0.00028343	-0.30109	-0.00016404	0.21913	0.00011939	544.8211525477808	58.747	1.3478	58.747	58.439	59.787	0					153	46	5	0	0	0	0.0029823	4	14283	14230;14283;14327;14370		103.42	67.292	1	16932000			27889	6589	16099	16100	34445;34446;34447;34448	34446					0.08743773171227076
LVFPSEIVGK	10	Unmodified	_LVFPSEIVGK_					0	0	0		ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF;ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENST00000484240.1_1_17:44798950-44799232:-|nuORF	ENST00000484240.1_1_17:44798950-44799232:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.8214111328125	2	544.82115	1087.62775	0.64818	0.00035314	-0.37331	-0.00020339	0.27487	0.00014976	544.8210803991968	58.6	1.6502	58.691	58.393	60.043	0.091301					177	58	6	0	0	0	0.0047411	4	14181	14181;14225;14275;14332		93.166	64.084	1	16789000			27890	6589	16099	16100	34449;34450;34451;34452	34449					0.08743773171227076
LVFPSEIVGK	10	Unmodified	_LVFPSEIVGK_					0	0	0		ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF;ENSG00000171863|ENST00000645674|RPS7;ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENST00000484240.1_1_17:44798950-44799232:-|nuORF	ENST00000484240.1_1_17:44798950-44799232:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.821533203125	2	544.82115	1087.62775	0.78318	0.00042669	-0.69886	-0.00038075	0.084324	4.5942E-05	544.8209787203114	58.7	1.3441	58.686	58.416	59.76	-0.014267					152	47	5	0	0	0	0.017732	4	14268	14218;14268;14310;14354		74.2	51.463	1	18744000			27891	6589	16099	16100	34453;34454;34455;34456	34454					0.08743773171227076
LVFPYPRKFF	10	Unmodified	_LVFPYPRKFF_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-3|KMT2E	REV__nc|ENSG00000005483|Q8IZD2-3|KMT2E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.2477722167969	3	438.585015	1312.73321	-0.17578	-7.7095E-05	0.86809	0.00038073	0.6923	0.00030363	438.58529860431867	25.647	0.52919	25.625	25.416	25.945	-0.022238					28	18	2	0	0	0	0.32051	1	4155	4155		3.8763	0	1	186600	+		27892	13345	16100	16101	34457	34457					0.08935734087503988
LVFPYPRKFF	10	Unmodified	_LVFPYPRKFF_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-3|KMT2E	REV__nc|ENSG00000005483|Q8IZD2-3|KMT2E	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	438.585015	1312.73321	-0.23537	-0.00010323	1.3664	0.0005993	1.1311	0.00049607	438.5855276297307	25.619	0.33741	25.563	25.395	25.732	-0.055931	-0.030879	0.00013359	NaN	6.6304	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147590	+		27893	13345	16100	16101							0.08935734087503988
LVFQPVAELKD	11	Unmodified	_LVFQPVAELKD_					0	0	0		nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF;nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM	nc|ENSG00000152556|P08237-3|PFKM	nc|ENSG00000152556|P08237-3|PFKM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.8563232421875	2	629.855721	1257.69689	0.36549	0.00023021	0.15343	9.6638E-05	0.51892	0.00032685	629.8557326948018	58.097	0.8339	58.097	57.634	58.468	0					95	29	4	0	0	0	0.33189	2	14008	14008;14107		19.362	2.9107	1	2396500			27894	12764	16101	16102	34458;34459	34458					0.07834812400119517
LVFQPVAELKD	11	Unmodified	_LVFQPVAELKD_					0	0	0		nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF;nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM	nc|ENSG00000152556|P08237-3|PFKM	nc|ENSG00000152556|P08237-3|PFKM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.85595703125	2	629.855721	1257.69689	0.23133	0.0001457	0.20308	0.00012791	0.4344	0.00027361	629.8557728466915	57.884	1.0363	57.97	57.544	58.581	0.085617					105	37	4	0	0	0	0.33189	1	13950	13950		19.362	0	1	2768900			27895	12764	16101	16102	34460	34460					0.07834812400119517
LVFQPVAELKD	11	Unmodified	_LVFQPVAELKD_					0	0	0		nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF;nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM	nc|ENSG00000152556|P08237-3|PFKM	nc|ENSG00000152556|P08237-3|PFKM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.8560791015625	2	629.855721	1257.69689	0.49095	0.00030923	0.014453	9.103E-06	0.50541	0.00031833	629.8556353889074	58.115	0.94916	58.097	57.631	58.58	-0.0172					106	34	4	0	0	0	0.26921	4	14035	13990;14035;14084;14129		24.991	4.9566	1	2679200			27896	12764	16101	16102	34461;34462;34463;34464	34462					0.07834812400119517
LVFRDVAPQAP	11	Unmodified	_LVFRDVAPQAP_					0	0	0		ENST00000474908.5_1_9:35813053-35813759:-|nuORF;ENSG00000137133|ENST00000259667|HINT2;ENST00000474848.6_1_9:35813053-35815141:-|nuORF;ENST00000471774.5_1_9:35813331-35813685:-|nuORF;ENST00000490578.1_1_9:35813369-35813745:-|nuORF;ENST00000461169.1_1_9:35813257-35815015:-|nuORF	ENST00000474908.5_1_9:35813053-35813759:-|nuORF	ENST00000474908.5_1_9:35813053-35813759:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.9119873046875	3	404.896029	1211.66626	-0.44193	-0.00017893	-1.7552	-0.00071067	-2.1971	-0.0008896	404.89559697595035	24.95	0.28198	24.919	24.765	25.047	-0.03141					11	8	2	0	0	0	0.32951	1	3933	3933		2.4348	0	1	24946			27897	10928	16102	16103	34465	34465					0.06889078805738791
LVFRLQVL	8	Unmodified	_LVFRLQVL_					0	0	0		ENST00000526148.5_2_11:10829311-10829500:-|nuORF	ENST00000526148.5_2_11:10829311-10829500:-|nuORF	ENST00000526148.5_2_11:10829311-10829500:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2261047363281	2	494.32112	986.627687	0.26269	0.00012985	-1.7299	-0.00085515	-1.4673	-0.0007253	494.320094509773	42.002	0.26092	42.002	41.932	42.193	0					11	8	2	0	0	0	0.34092	1	9118	9118		13.508	1.8676	1	414990			27898	11549	16103	16104	34466	34466					0.13383817961880595
LVGGSQRGRQ	10	Unmodified	_LVGGSQRGRQ_					0	0	0		ENST00000379656.7_1_19:18112104-18119556:+|nuORF	ENST00000379656.7_1_19:18112104-18119556:+|nuORF	ENST00000379656.7_1_19:18112104-18119556:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2991943359375	2	529.296696	1056.57884	0.51126	0.00027061	3.6673	0.0019411	4.1786	0.0022117	529.2998728455866	24.02	0.82676	23.981	23.592	24.418	-0.038927					74	28	5	0	0	0	0.34053	1	3624	3624		14.405	1.3629	1	324810			27899	9973	16104	16105	34467	34467					0.052812976548466395
LVGLRLEPI	9	Unmodified	_LVGLRLEPI_					0	0	0			REV__nc|ENSG00000135439|Q99490-2|AGAP2	REV__nc|ENSG00000135439|Q99490-2|AGAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2769775390625	2	505.32386	1008.63317	0.34021	0.00017192	-0.14969	-7.5642E-05	0.19053	9.6277E-05	505.3238322595195	48.955	0.46951	49	48.824	49.293	0.044888					29	16	2	0	0	0	0.25417	1	11268	11268		0.52476	0	1	678290	+		27900	15741	16105	16106	34468	34468					0.12919496753693238
LVGPYSTTV	9	Unmodified	_LVGPYSTTV_					0	0	0		nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.755859375	2	468.755475	935.496398	0.1584	7.4249E-05	0.15409	7.2231E-05	0.31249	0.00014648	468.75547273633475	62.879	0.56843	62.975	62.688	63.256	0.095722					50	20	3	0	0	0	0.079066	1	15572	15572		42.095	0.25493	1	844670			27901	1769	16106	16107	34469	34469					0.02606962803326951
LVGRERPD	8	Unmodified	_LVGRERPD_					0	0	0		LTR5B_dup128|chr5:157034004-157034984:-|1.3856941857337757|0.0738699138464268|4.23|526.0|27|3|sense;LTR5_Hs_dup15|chr1:46329763-46330515:+|1.286842853034861|0.0339675607481123|5.24|486.0|12|2|sense	LTR5B_dup128|chr5:157034004-157034984:-|1.3856941857337757|0.0738699138464268|4.23|526.0|27|3|sense	LTR5B_dup128|chr5:157034004-157034984:-|1.3856941857337757|0.0738699138464268|4.23|526.0|27|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2200622558594	2	471.261791	940.509028	-0.12795	-6.0299E-05	-0.20695	-9.753E-05	-0.33491	-0.00015783	471.2616173698124	19.003	0.94815	19.003	18.765	19.713	0					79	33	4	0	0	0	0.32435	1	2148	2148		16.942	0	1	372840			27902	12518	16107	16108	34470	34470					0.036394189862335224
LVGRVLVL	8	Unmodified	_LVGRVLVL_					0	0	0		ENST00000489377.1_1_9:103207326-103207509:+|nuORF	ENST00000489377.1_1_9:103207326-103207509:+|nuORF	ENST00000489377.1_1_9:103207326-103207509:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.802490234375	2	434.802563	867.590573	0.14422	6.2707E-05	-0.22369	-9.7259E-05	-0.079468	-3.4553E-05	434.80239267214927	58.709	0.80579	58.694	58.416	59.222	-0.014267					55	28	3	0	0	0	0.20019	1	14259	14259		42.968	2.5194	1	1144700			27903	11147	16108	16109	34471	34471					0.15148146416129293
LVHAATLI	8	Unmodified	_LVHAATLI_					0	0	0		TMEM245|p.V396Sfs*43|1|0.14|ENSG00000106771|chr9:109087308-109087309|-/A|frameshift_variant;nc|ENSG00000106771|Q9H330-4|TMEM245;ENSG00000106771|ENST00000374586|TMEM245	TMEM245|p.V396Sfs*43|1|0.14|ENSG00000106771|chr9:109087308-109087309|-/A|frameshift_variant;REV__nc|ENSG00000127241|P48740-4|MASP1	REV__nc|ENSG00000127241|P48740-4|MASP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.2574157714844	2	419.263271	836.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.419	1	86.41	85.91	86.91	-0.0090027								0	0	0	0.3683	1	22727	22727		6.3541	0	1				27904	2099;15333	16109	16110	34472	34472					0.08719294111040199
LVHFSLLPF	9	Unmodified	_LVHFSLLPF_					0	0	0		ENST00000345506.8_1_17:40439637-40440150:+|nuORF	ENST00000345506.8_1_17:40439637-40440150:+|nuORF	ENST00000345506.8_1_17:40439637-40440150:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.830322265625	2	536.813128	1071.6117	0.36929	0.00019824	-4.4729	-0.0024011	-4.1036	-0.0022029	537.3116163490149	68.657	0.31975	68.729	68.51	68.83	0.071938					16	11	2	0	0	0	0.23147	1	17330	17330		13.508	0.97634	1	132300			27905	9562	16110	16111	34473	34473					0.07876111724976909
LVHFSLLPF	9	Unmodified	_LVHFSLLPF_					0	0	0		ENST00000345506.8_1_17:40439637-40440150:+|nuORF	ENST00000345506.8_1_17:40439637-40440150:+|nuORF	ENST00000345506.8_1_17:40439637-40440150:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	536.813128	1071.6117	0.56487	0.00030323	-6.0768	-0.0032621	-5.5119	-0.0029589	536.8092982039502	68.58	0.29512	68.58	68.491	68.786	0	-0.074248	-0.0012816	NaN	13.508	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152420			27906	9562	16110	16111							0.07876111724976909
LVHIMMESEK	10	Unmodified	_LVHIMMESEK_					0	0	0			REV__ENST00000432667.5_1_2:676024-676177:-|nuORF	REV__ENST00000432667.5_1_2:676024-676177:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.8889465332031	3	406.206998	1215.59917	-0.26043	-0.00010579	-1.408	-0.00057195	-1.6685	-0.00067774	406.206336448387	18.668	1.0249	18.551	17.812	18.837	-0.11739					50	35	2	0	0	0	0.318	1	1831	1831		3.8763	0	1	98932	+		27907	20960	16111	16112	34474	34474					-1.0357918881709338E-05
LVHKAGSNM	9	Unmodified	_LVHKAGSNM_					0	0	0			REV__nc|ENSG00000005156|P49916-4|LIG3	REV__nc|ENSG00000005156|P49916-4|LIG3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.73699951171875	2	478.752744	955.490935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.218	1	79.28	78.78	79.78	0.061417								0	0	0	0.23367	1	20521	20521		11.64	1.4569	1		+		27908	13341	16112	16113	34475	34475					0.011409607398718435
LVHLLTLSL	9	Unmodified	_LVHLLTLSL_					0	0	0		nc|ENSG00000172575|O95267-2|RASGRP1;ENSG00000172575|ENST00000310803|RASGRP1;nc|ENSG00000172575|O95267-4|RASGRP1;nc|ENSG00000172575|O95267-5|RASGRP1;nc|ENSG00000172575|O95267-3|RASGRP1	nc|ENSG00000172575|O95267-2|RASGRP1	nc|ENSG00000172575|O95267-2|RASGRP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2772521972656	2	504.826235	1007.63792	0.44389	0.00022409	0.010885	5.4951E-06	0.45477	0.00022958	504.8263211492979	53.888	0.4042	53.878	53.715	54.119	-0.0096092					25	14	2	0	0	0	0.24311	1	12749	12749		3.9444	0	1	227020			27909	6649	16113	16114	34476	34476					0.13440380896463466
LVHNAPLGGF	10	Unmodified	_LVHNAPLGGF_					0	0	0			REV__ENST00000490483.5_3_19:36500194-36502343:-|nuORF	REV__ENST00000490483.5_3_19:36500194-36502343:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7711791992188	2	512.782359	1023.55016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.094	1	77.149	76.649	77.649	0.055412								0	0	0	0.34212	1	19874	19874		18.135	2.2878	1		+		27910	19160	16114	16115	34477	34477					0.0393318002571732
LVHQVFSEK	9	Unmodified	_LVHQVFSEK_					0	0	0		nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.8009033203125	2	543.800749	1085.58694	0.36849	0.00020039	-0.29804	-0.00016208	0.070448	3.831E-05	543.8005897969675	25.358	0.62268	25.358	25.091	25.714	0					41	20	3	0	0	0	0.13748	1	4032	4032		32.786	3.7041	1	188190			27911	6443	16115	16116	34478	34478					0.04757431851612637
LVHQVFSEK	9	Unmodified	_LVHQVFSEK_					0	0	0		nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.8009033203125	2	543.800749	1085.58694	0.23361	0.00012704	-0.45468	-0.00024725	-0.22107	-0.00012022	543.8007358956107	25.454	0.78483	25.423	24.953	25.738	-0.031408					49	27	3	0	0	0	0.16283	1	4036	4036		29.082	0	1	154780			27912	6443	16115	16116	34479	34479					0.04757431851612637
LVHQVFSEK	9	Unmodified	_LVHQVFSEK_					0	0	0		nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENSG00000170324|ENST00000374201|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.800749	1085.58694	0.23361	0.00012704	-0.45468	-0.00024725	-0.22107	-0.00012022	543.8007358956107	25.454	0.78483	25.423	24.953	25.738	-0.031408	0.032521	-9.1686E-05	NaN	32.786	49	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154780			27913	6443	16115	16116							0.04757431851612637
LVHSGLLI	8	Unmodified	_LVHSGLLI_					0	0	0		ENSG00000178726|ENST00000377103|THBD	ENSG00000178726|ENST00000377103|THBD	ENSG00000178726|ENST00000377103|THBD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.9046936035156	2	426.271096	850.527639	0.041666	1.7761E-05	-0.6937	-0.00029571	-0.65204	-0.00027795	426.2707860819428	36.582	0.37015	36.582	36.385	36.756	0					20	12	2	0	0	0	0.31375	1	7418	7418		26.341	0	1	97571			27914	7072	16116	16117	34480	34480					0.09639580628083877
LVHSGLLI	8	Unmodified	_LVHSGLLI_					0	0	0		ENSG00000178726|ENST00000377103|THBD	ENSG00000178726|ENST00000377103|THBD	ENSG00000178726|ENST00000377103|THBD	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	426.271096	850.527639	0.05912	2.5201E-05	-0.44353	-0.00018906	-0.38441	-0.00016386	426.2707860116403	36.417	0.33981	36.499	36.362	36.701	0.082355	-0.030153	0.00019044	NaN	26.341	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153880			27915	7072	16116	16117							0.09639580628083877
LVHSGLLI	8	Unmodified	_LVHSGLLI_					0	0	0		ENSG00000178726|ENST00000377103|THBD	ENSG00000178726|ENST00000377103|THBD	ENSG00000178726|ENST00000377103|THBD	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	426.271096	850.527639	0.39379	0.00016786	-0.9755	-0.00041583	-0.58171	-0.00024797	426.2705646384368	36.421	0.37388	36.507	36.333	36.707	0.08625	-0.022544	-0.00026309	NaN	26.341	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133630			27916	7072	16116	16117							0.09639580628083877
LVHSGQRRL	9	Unmodified	_LVHSGQRRL_					0	0	0			REV__ENST00000592217.2_1_19:46271832-46273041:+|nuORF	REV__ENST00000592217.2_1_19:46271832-46273041:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7531127929688	2	533.317432	1064.62031	0.17923	9.5586E-05	-0.18409	-9.8181E-05	-0.0048657	-2.5949E-06	533.317306158998	15.257	0.41618	15.192	15.041	15.457	-0.064413					27	13	3	0	0	0	0.25938	1	997	997		4.3292	0	1	130270	+		27917	22571	16117	16118	34481	34481					0.09058478414158344
LVHSQHLYHI	10	Unmodified	_LVHSQHLYHI_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.5543518066406	3	416.22789	1245.66184	-0.05481	-2.2814E-05	0.87551	0.00036441	0.8207	0.0003416	416.2280778924552	29.81	0.61486	29.823	29.481	30.095	0.013474					48	20	3	0	0	0	0.32033	1	5271	5271		4.1895	2.1035	1	162590	+		27918	13757	16118	16119	34482	34482					0.04883614382856649
LVHTRSKA	8	Unmodified	_LVHTRSKA_					0	0	0		nc|ENSG00000142609|Q9C0B2|CFAP74;ENSG00000142609|ENST00000682832|CFAP74	nc|ENSG00000142609|Q9C0B2|CFAP74	nc|ENSG00000142609|Q9C0B2|CFAP74	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7485046386719	2	456.274701	910.534849	-0.082691	-3.773E-05	0.12563	5.7321E-05	0.042938	1.9591E-05	456.2747245668122	19.235	0.39068	19.235	19.157	19.547	0					17	13	2	0	0	0	0.34367	1	2181	2181		4.3292	0	1	16309			27919	4454	16119	16120	34483	34483					0.07600313228510913
LVICETSEQKT	11	Unmodified	_LVICETSEQKT_					0	0	0		ENSG00000123297|ENST00000652027|TSFM;nc|ENSG00000123297|P43897-2|TSFM	ENSG00000123297|ENST00000652027|TSFM	ENSG00000123297|ENST00000652027|TSFM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2294921875	3	417.548078	1249.6224	-0.18013	-7.5213E-05	1.4811	0.00061843	1.301	0.00054321	417.54855737448247	14.286	0.31193	14.22	14.037	14.349	-0.066068					17	10	2	0	0	0	0.3322	1	646	646		4.7159	0.83959	1	64627			27920	3094	16120	16121	34484	34484					0.00757681526442866
LVIGFSFIDVT	11	Unmodified	_LVIGFSFIDVT_					0	0	0			REV__nc|ENSG00000182541|P53671-3|LIMK2	REV__nc|ENSG00000182541|P53671-3|LIMK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.8369750976562	2	605.839539	1209.66453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.85	1	12.85	12.35	13.35	0								0	0	0	0.36137	1	249	249		5.7319	0	1		+		27921	23123	16121	16122	34485	34485					0.0680802499712172
LVILEIMHH	9	Unmodified	_LVILEIMHH_					0	0	0		nc|ENSG00000147274|P38159-3|RBMX	nc|ENSG00000147274|P38159-3|RBMX	nc|ENSG00000147274|P38159-3|RBMX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8157348632812	2	552.815344	1103.61614	0.15121	8.359E-05	0.22057	0.00012194	0.37178	0.00020553	552.8152068327158	15.827	0.50192	15.827	15.591	16.093	0					29	17	2	0	0	0	0.34536	1	1136	1136		2.0598	0	1	72056			27922	12747	16122	16123	34486	34486					0.06847252876264065
LVILKHSSL	9	Unmodified	_LVILKHSSL_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ALS2|p.T978Ifs*30|1|0.04|ENSG00000003393|chr2:201727260-201727261|-/ATAAAGAAGAAATATAAATT|frameshift_variant;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF	ENSG00000003393|ENST00000264276|ALS2;nc|ENSG00000003393|Q96Q42-3|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2772216796875	2	505.32386	1008.63317	0.18333	9.2642E-05	-0.31791	-0.00016065	-0.13458	-6.8006E-05	505.3236316608171	48.935	0.58245	48.967	48.774	49.356	0.032043					33	20	2	0	0	0	0.24311	1	11213	11213		7.2892	0	1	650120			27923	302;11050	16123	16124	34487	34487					0.12919496753693238
LVILRGRDRP	10	Unmodified	_LVILRGRDRP_					0	0	0		ENST00000575090.1_1_17:79781125-79781671:-|nuORF	ENST00000575090.1_1_17:79781125-79781671:-|nuORF	ENST00000575090.1_1_17:79781125-79781671:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8564453125	2	597.875114	1193.73567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.94	1	101.94	101.44	102.44	-0.0033646								0	0	0	0.38189	1	27196	27196		1.1933	0.12188	1				27924	12043	16124	16125	34488	34488					0.14655582545174184
LVIPFAVQK	9	Unmodified	_LVIPFAVQK_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.8206481933594	2	507.820953	1013.62735	-0.092763	-4.7107E-05	-0.13202	-6.7043E-05	-0.22478	-0.00011415	507.82076487260275	60.181	0.49142	60.181	59.922	60.413	0					42	17	3	0	0	0	0.037693	1	14698	14698		57.471	25.166	1	1473100			27925	3377	16125	16126	34489	34489					0.1210839824203731
LVIPFAVQK	9	Unmodified	_LVIPFAVQK_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.30023193359375	2	507.820953	1013.62735	-0.43817	-0.00022251	0.24005	0.0001219	-0.19812	-0.00010061	507.82101958978336	60.047	0.51473	60.142	59.907	60.422	0.095093					39	18	3	0	0	0	0.17611	1	14634	14634		26.884	6.43	1	1576000			27926	3377	16125	16126	34490	34490					0.1210839824203731
LVIPFAVQK	9	Unmodified	_LVIPFAVQK_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.8208312988281	2	507.820953	1013.62735	0.077685	3.945E-05	-0.18535	-9.4126E-05	-0.10767	-5.4676E-05	507.8207750149104	60.122	0.46375	60.11	59.94	60.404	-0.011486					39	16	3	0	0	0	0.079066	1	14680	14680		42.095	16.695	1	1535100			27927	3377	16125	16126	34491	34491					0.1210839824203731
LVIPFTIKK	9	Unmodified	_LVIPFTIKK_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.8523559570312	2	529.852253	1057.68995	0.56731	0.00030059	-0.47925	-0.00025393	0.088062	4.666E-05	529.8519981852648	52.703	1.0855	52.703	52.382	53.468	0					106	39	4	0	0	0	0.0054984	3	12393	12348;12393;12434		86.332	50.205	1	6225800			27928	7913	16126	16127	34492;34493;34494	34493					0.16341544310216705
LVIPFTIKK	9	Unmodified	_LVIPFTIKK_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.8523559570312	2	529.852253	1057.68995	0.57064	0.00030235	-0.4625	-0.00024506	0.10813	5.7295E-05	529.8519881887405	52.612	1.0597	52.663	52.417	53.476	0.050571					102	38	5	0	0	0	0.0024096	2	12383	12338;12383		106.94	65.101	1	5863000			27929	7913	16126	16127	34495;34496	34496					0.16341544310216705
LVIPFTIKK	9	Unmodified	_LVIPFTIKK_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.8523559570312	2	529.852253	1057.68995	0.43533	0.00023066	-0.24807	-0.00013144	0.18726	9.9223E-05	529.8521129276381	52.721	1.0803	52.72	52.385	53.465	-0.00081253					105	39	4	0	0	0	0.0037449	3	12402	12354;12402;12449		96.367	64.061	1	6626100			27930	7913	16126	16127	34497;34498;34499	34498					0.16341544310216705
LVIPSLKDR	9	Unmodified	_LVIPSLKDR_					0	0	0			REV__nc|ENSG00000005961|P08514-2|ITGA2B	REV__nc|ENSG00000005961|P08514-2|ITGA2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7667846679688	2	520.826766	1039.63898	0.66668	0.00034722	-0.19921	-0.00010375	0.46747	0.00024347	520.8265974017337	32.37	0.35755	32.425	32.288	32.645	0.055313					19	12	2	0	0	0	0.25323	1	6192	6192		10.074	1.3285	1	116690	+		27931	13348	16127	16128	34500	34500					0.12074595265357857
LVISIELTV	9	Unmodified	_LVISIELTV_					0	0	0			REV__ENST00000306100.9_1_4:163084851-163084935:-|nuORF	REV__ENST00000306100.9_1_4:163084851-163084935:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.22607421875	2	493.810251	985.605948	0.44058	0.00021756	0.50597	0.00024985	0.94654	0.00046741	493.8105389121982	42.166	0.81486	42.257	41.957	42.772	0.091362					74	28	4	0	0	0	0.21137	1	9090	9090		24.674	24.674	1	1476400	+		27932	19859	16128	16129	34501	34501					0.11256968422651425
LVIVHRPTI	9	Unmodified	_LVIVHRPTI_					0	0	0			REV__ENSG00000165695|ENST00000298545|AK8	REV__ENSG00000165695|ENST00000298545|AK8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3192749023438	2	524.337301	1046.66005	0.6054	0.00031743	-0.28423	-0.00014903	0.32117	0.0001684	524.3368855444013	43.142	0.76859	43.22	42.968	43.736	0.077518					65	27	4	0	0	0	0.13748	1	9481	9481		32.786	5.1569	1	1061400	+		27933	17257	16129	16130	34502	34502					0.13858605364907817
LVIYLAALYE	10	Unmodified	_LVIYLAALYE_					0	0	0			REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3367919921875	2	584.336633	1166.65871	0.24523	0.00014329	0.43536	0.0002544	0.68059	0.00039769	584.3369044894233	17.695	0.51585	17.635	17.384	17.9	-0.060431					44	17	3	0	0	0	0.41085	1	1714	1714		1.4819	0	1	93580	+		27934	16912	16130	16131	34503	34503					0.08204926485473152
LVKEELMKKDK	11	Unmodified	_LVKEELMKKDK_					0	0	0			REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.24786376953125	3	454.267134	1359.77957	-0.042285	-1.9209E-05	2.6007	0.0011814	2.5584	0.0011622	454.26820967974754	27.434	0.3634	27.413	27.13	27.493	-0.021412					27	12	3	0	0	0	0.33284	1	4591	4591		3.3557	0.22177	1	257420	+		27935	23203	16131	16132	34504	34504					0.11407386136602327
LVKFLSPQ	8	Unmodified	_LVKFLSPQ_					0	0	0		ENSG00000244462|ENST00000374114|RBM12	ENSG00000244462|ENST00000374114|RBM12	ENSG00000244462|ENST00000374114|RBM12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7652893066406	2	466.284203	930.553853	0.2163	0.00010086	-0.12321	-5.7452E-05	0.093085	4.3404E-05	466.284074286045	53.726	0.48123	53.726	53.493	53.974	0					28	17	2	0	0	0	0.32886	1	12667	12667		10.824	10.824	1	306490			27936	8570	16132	16133	34505	34505					0.08579849799559724
LVKGLIQKPSE	11	Unmodified	_LVKGLIQKPSE_					0	0	0			REV__ENST00000563196.5_2_16:58714007-58718665:-|nuORF	REV__ENST00000563196.5_2_16:58714007-58718665:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3704833984375	2	606.371538	1210.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.927	1	97.989	97.489	98.489	0.061516								0	0	0	0.38124	1	26206	26206		2.9952	0	1		+		27937	22325	16133	16134	34506	34506					0.13158805154057518
LVKGLIQKPSE	11	Unmodified	_LVKGLIQKPSE_					0	0	0			REV__ENST00000563196.5_2_16:58714007-58718665:-|nuORF	REV__ENST00000563196.5_2_16:58714007-58718665:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3699951171875	2	606.371538	1210.72852	0.27605	0.00016739	-2.1841	-0.0013244	-1.908	-0.001157	606.3703879063602	100.42	0.1308	100.46	100.43	100.56	0.039001					26	17	2	0	0	0	0.33255	1	26838	26838		2.9952	0	1	115430	+		27938	22325	16133	16134	34507	34507					0.13158805154057518
LVKGLIQKPSE	11	Unmodified	_LVKGLIQKPSE_					0	0	0			REV__ENST00000563196.5_2_16:58714007-58718665:-|nuORF	REV__ENST00000563196.5_2_16:58714007-58718665:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.370361328125	2	606.371538	1210.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.803	1	88.802	88.302	89.302	-0.0016403								0	0	0	0.37548	1	23461	23461		5.7319	0	1		+		27939	22325	16133	16134	34508	34508					0.13158805154057518
LVKGLIQKPSE	11	Unmodified	_LVKGLIQKPSE_					0	0	0			REV__ENST00000563196.5_2_16:58714007-58718665:-|nuORF	REV__ENST00000563196.5_2_16:58714007-58718665:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	606.371538	1210.72852	0.059731	3.6219E-05	-2.3083	-0.0013997	-2.2486	-0.0013635	606.8713120511713	100.79	0.045792	100.79	100.76	100.81	0	0.16545	-4.1833E-05	NaN	2.9952	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59096	+		27940	22325	16133	16134							0.13158805154057518
LVKGPVTSHG	10	Unmodified	_LVKGPVTSHG_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2671203613281	2	497.787641	993.56073	0.41789	0.00020802	0.43412	0.0002161	0.85202	0.00042412	497.78769786431536	37.376	0.56527	37.469	37.142	37.707	0.093014					33	20	2	0	0	0	0.31267	1	7685	7685		3.2813	0	1	162350			27941	1047	16134	16135	34509	34509					0.06369162680141471
LVKKGNVSMI	10	Unmodified	_LVKKGNVSMI_					0	0	0			REV__ENSG00000203879|ENST00000447750|GDI1	REV__ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.8108520507812	2	544.828452	1087.64235	0.74309	0.00040486	-4.0879	-0.0022272	-3.3448	-0.0018223	544.8262955354087	73.096	0.30788	73.067	72.846	73.153	-0.029305					12	10	2	0	0	0	0.34795	1	18641	18641		13.042	0.80181	1	49693	+		27942	18910	16135	16136	34510	34510					0.10203522047731894
LVKRPDVPF	9	Unmodified	_LVKRPDVPF_					0	0	0			REV__nc|ENSG00000136636|Q9Y597-2|KCTD3	REV__nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2808837890625	2	535.821484	1069.62842	0.6137	0.00032883	0.5913	0.00031683	1.205	0.00064566	535.821765479143	57.163	1.0248	57.163	56.744	57.768	0					63	37	2	0	0	0	0.23147	1	13952	13952		19.439	2.4967	1	1601300	+		27943	15819	16136	16137	34511	34511					0.09638612610933706
LVKSFLFPK	9	Unmodified	_LVKSFLFPK_					0	0	0			REV__ENST00000558973.1_1_15:35623137-35703056:-|nuORF	REV__ENST00000558973.1_1_15:35623137-35703056:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8366088867188	2	539.836603	1077.65865	0.3992	0.0002155	-0.199	-0.00010743	0.20019	0.00010807	539.8364161133175	57.613	0.72311	57.596	57.31	58.033	-0.0172					59	26	3	0	0	0	0.18936	1	13895	13895		32.786	3.7041	1	1478600	+		27944	22285	16137	16138	34512	34512					0.12292971276133358
LVKSQHLLI	9	Unmodified	_LVKSQHLLI_					0	0	0			REV__ENST00000478470.5_1_7:151168680-151174458:-|nuORF	REV__ENST00000478470.5_1_7:151168680-151174458:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8368530273438	2	525.837134	1049.65972	0.35338	0.00018582	-0.63708	-0.000335	-0.2837	-0.00014918	525.836711093691	61.611	0.83015	61.611	61.254	62.084	0					67	30	3	0	0	0	0.017871	1	15138	15138		67.344	5.9864	1	630180	+		27945	21453	16138	16139	34513	34513					0.1368718564503979
LVKSVQVK	8	Unmodified	_LVKSVQVK_					0	0	0		ENSG00000162078|ENST00000382280|ZG16B	ENSG00000162078|ENST00000382280|ZG16B	ENSG00000162078|ENST00000382280|ZG16B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.91363525390625	2	450.797478	899.580402	0.20357	9.1769E-05	0.086104	3.8816E-05	0.28968	0.00013058	450.79761583941337	28.834	0.36564	28.834	28.64	29.006	0					20	12	2	0	0	0	0.32778	1	5091	5091		20.871	6.2895	1	86484			27946	5547	16139	16140	34514	34514					0.12659538690900263
LVKTSFMPWR	10	Unmodified	_LVKTSFMPWR_					0	0	0		ENST00000399781.5_1_22:18120937-18121120:+|nuORF	ENST00000399781.5_1_22:18120937-18121120:+|nuORF	ENST00000399781.5_1_22:18120937-18121120:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.8318481445312	2	632.847176	1263.6798	0.62718	0.00039691	1.2612	0.00079816	1.8884	0.0011951	632.8477649839481	32.528	0.11543	32.528	32.44	32.556	0					5	3	2	0	0	0	0.32132	1	6193	6193		1.4819	0	1	38425			27947	10181	16140	16141	34515	34515					0.058506133133278126
LVKWYNFNQF	10	Unmodified	_LVKWYNFNQF_					0	0	0			REV__ENST00000555147.1_1_16:89984433-89984928:+|nuORF	REV__ENST00000555147.1_1_16:89984433-89984928:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2686462402344	3	453.567912	1357.68191	0.15144	6.8689E-05	-0.9887	-0.00044844	-0.83726	-0.00037976	453.5675283317772	35.584	0.54869	35.666	35.325	35.874	0.082355					32	19	2	0	0	0	0.32051	1	7062	7062		3.8763	0	1	410650	+		27948	22245	16141	16142	34516	34516					0.017373653227878094
LVLAVKQLF	9	Unmodified	_LVLAVKQLF_					0	0	0		nc|ENSG00000063761|Q86TW2-3|ADCK1;ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.8367919921875	2	515.836603	1029.65865	0.47677	0.00024593	-0.0093732	-4.8351E-06	0.46739	0.0002411	515.8364725720928	49.382	0.94431	49.382	49.105	50.05	0					86	34	4	0	0	0	0.24581	1	11441	11441		16.942	0	1	2371700			27949	779	16142	16143	34517	34517					0.14500971276129349
LVLAVKQLF	9	Unmodified	_LVLAVKQLF_					0	0	0		nc|ENSG00000063761|Q86TW2-3|ADCK1;ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.8367309570312	2	515.836603	1029.65865	0.10981	5.6642E-05	0.41826	0.00021576	0.52807	0.0002724	515.8366903074565	49.35	0.85171	49.382	49.149	50	0.032043					84	30	4	0	0	0	0.1669	1	11431	11431		28.487	8.0723	1	2296100			27950	779	16142	16143	34518	34518					0.14500971276129349
LVLCCFALL	9	Unmodified	_LVLCCFALL_					0	0	0			REV__ENSG00000077984|ENST00000480798|CST7	REV__ENSG00000077984|ENST00000480798|CST7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.3100891113281	2	497.776842	993.539131	0.51452	0.00025612	-4.0855	-0.0020337	-3.571	-0.0017775	497.77269732426976	91.572	0.12695	91.573	91.523	91.65	0.00046539					10	9	2	0	0	0	0.25811	1	24324	24324		2.3027	1.5091	1	34527	+		27951	13847	16143	16144	34519	34519					0.042103183355493456
LVLDDDLLCKP	11	Unmodified	_LVLDDDLLCKP_					0	0	0			REV__ENSG00000135541|ENST00000265602|AHI1	REV__ENSG00000135541|ENST00000265602|AHI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.33447265625	2	622.333764	1242.65297	-0.13677	-8.5117E-05	3.6699	0.0022839	3.5331	0.0021988	622.335621279193	106.62	0.16843	106.61	106.51	106.68	-0.0060501					33	25	2	0	0	0	0.33198	1	28181	28181		4.5289	0.33936	1	712610	+		27952	15748	16144	16145	34520	34520					0.04135459911481121
LVLDQVKV	8	Unmodified	_LVLDQVKV_					0	0	0			REV__ENSG00000146250|ENST00000369700|PRSS35	REV__ENSG00000146250|ENST00000369700|PRSS35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7975158691406	2	457.289485	912.564418	0.26036	0.00011906	-0.017461	-7.9848E-06	0.2429	0.00011108	457.2895933895622	55.163	0.61602	55.163	54.891	55.507	0					37	22	2	0	0	0	0.34092	1	13259	13259		4.756	0	1	889040	+		27953	16338	16145	16146	34521	34521					0.10463832454001931
LVLEEGGR	8	Unmodified	_LVLEEGGR_					0	0	0			REV__ENST00000557028.5_1_14:24843440-24843749:+|nuORF	REV__ENST00000557028.5_1_14:24843440-24843749:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2611083984375	2	436.745442	871.476331	0.0070847	3.0942E-06	-2.4595	-0.0010742	-2.4524	-0.0010711	436.7445817963089	33.45	0.41552	33.45	33.285	33.7	0					21	14	2	0	0	0	0.32778	1	6513	6513		14.582	0	1	98715	+		27954	14238	16146	16147	34522	34522					0.03545211863388431
LVLELLKSF	9	Unmodified	_LVLELLKSF_					0	0	0			REV__nc|ENSG00000139734|Q9NSV4-1|DIAPH3	REV__nc|ENSG00000139734|Q9NSV4-1|DIAPH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3343505859375	2	531.333893	1060.65323	0.45918	0.00024398	0.41169	0.00021874	0.87087	0.00046272	531.3342786884443	69.093	0.77652	69.093	68.841	69.618	0					55	27	3	0	0	0	0.19747	1	17486	17486		24.021	1.2843	1	501540	+		27955	16005	16147	16148	34523	34523					0.12533247693681915
LVLGKRPV	8	Unmodified	_LVLGKRPV_					0	0	0		nc|ENSG00000180592|Q1XH10-2|SKIDA1;ENSG00000180592|ENST00000449193|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.787841796875	2	441.300188	880.585822	0.17162	7.5738E-05	-1.3818	-0.00060977	-1.2101	-0.00053403	441.2995291855578	37.844	0.34875	37.935	37.693	38.042	0.090881					12	12	2	0	0	0	0.34092	1	7801	7801		13.508	0	1	61099			27956	7194	16148	16149	34524	34524					0.14075262273365752
LVLILLHTV	9	Unmodified	_LVLILLHTV_					0	0	0		ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.25445556640625	2	510.844428	1019.6743	0.20594	0.0001052	-0.23194	-0.00011849	-0.025999	-1.3282E-05	510.8442606727111	69.901	0.54234	69.879	69.621	70.163	-0.022087					34	19	2	0	0	0	0.21905	1	17706	17706		23.148	0	1	150250			27957	8228	16149	16150	34525	34525					0.16525257793171022
LVLILLHTV	9	Unmodified	_LVLILLHTV_					0	0	0		ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	510.844428	1019.6743	0.23089	0.00011795	-0.80902	-0.00041328	-0.57813	-0.00029533	510.8441509057458	69.897	0.5658	69.897	69.618	70.183	0	0.02129	-0.00033901	NaN	23.148	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100450			27958	8228	16149	16150							0.16525257793171022
LVLILLHTV	9	Unmodified	_LVLILLHTV_					0	0	0		ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	510.844428	1019.6743	0.15253	7.7918E-05	-0.63149	-0.00032259	-0.47897	-0.00024468	510.84411156346124	69.785	0.52377	69.851	69.609	70.133	0.066048	-0.024466	-0.00015763	NaN	23.148	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150130			27959	8228	16149	16150							0.16525257793171022
LVLKHQNIKE	10	Unmodified	_LVLKHQNIKE_					0	0	0			REV__L1MD2_dup3931|chr7:382708-385046:+|1.236162871048498|0.3102442397353085|1.99|537.0|36|2|sense	REV__L1MD2_dup3931|chr7:382708-385046:+|1.236162871048498|0.3102442397353085|1.99|537.0|36|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.9008483886719	3	407.915312	1220.72411	-0.12453	-5.0797E-05	1.3556	0.00055297	1.2311	0.00050217	407.91553430555257	17.585	0.83817	17.585	17.186	18.024	0					60	28	3	0	0	0	0.3213	1	1671	1671		1.9064	0.1641	1	67646	+		27960	22792	16150	16151	34526	34526					0.12257340731162003
LVLKNISTLIL	11	Unmodified	_LVLKNISTLIL_					0	0	0		ENST00000309579.7_1_10:105152129-105156203:-|nuORF	ENST00000309579.7_1_10:105152129-105156203:-|nuORF	ENST00000309579.7_1_10:105152129-105156203:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.60797119140625	3	409.607596	1225.80096	-0.012423	-5.0885E-06	0.82565	0.00033819	0.81323	0.00033311	409.60841977764244	52.372	3.9108	52.372	51.997	55.907	0					445	143	6	0	0	0	0.40129	1	12861	12861		11.065	2.3135	1	99351000			27961	9303	16151	16152	34527	34527					0.19709139227666128
LVLKNISTLIL	11	Unmodified	_LVLKNISTLIL_					0	0	0		ENST00000309579.7_1_10:105152129-105156203:-|nuORF	ENST00000309579.7_1_10:105152129-105156203:-|nuORF	ENST00000309579.7_1_10:105152129-105156203:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.6079406738281	3	409.607596	1225.80096	0.16529	6.7705E-05	0.70603	0.0002892	0.87132	0.0003569	409.6083823483185	52.347	3.1865	52.397	52.009	55.196	0.050575					383	118	5	0	0	0	0.40129	1	12835	12835		11.065	2.3135	1	96925000			27962	9303	16151	16152	34528	34528					0.19709139227666128
LVLLGAVITG	10	Unmodified	_LVLLGAVITG_					0	0	0		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.78533935546875	2	478.312961	954.611368	0.27777	0.00013286	-1.4651	-0.0007008	-1.1874	-0.00056794	478.3121986623792	82.349	0.42043	82.349	82.287	82.708	0					21	15	2	0	0	0	0.27772	1	21520	21520		20.454	5.6154	1	86916			27963	8321	16152	16153	34529	34529					0.13224692005121597
LVLLGAVITG	10	Unmodified	_LVLLGAVITG_					0	0	0		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.785400390625	2	478.312961	954.611368	0.21589	0.00010326	-1.0421	-0.00049845	-0.82622	-0.00039519	478.3125882405208	82.29	0.44331	82.36	82.154	82.598	0.069427					23	17	2	0	0	0	0.28434	1	21463	21463		13.906	2.2658	1	115220			27964	8321	16152	16153	34530	34530					0.13224692005121597
LVLLHHHCKL	10	Unmodified	_LVLLHHHCKL_					0	0	0		nc|ENSG00000118557|Q8TBY8-3|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.85369873046875	3	404.905982	1211.69612	-0.26399	-0.00010689	0.37206	0.00015065	0.10807	4.376E-05	405.24008622326556	27.374	0.59941	27.363	26.984	27.584	-0.01156					55	20	4	0	0	0	0.32051	1	4597	4597		3.8763	0	1	211900			27965	2834	16153	16154	34531	34531					0.09873739270096848
LVLLKLGSI	9	Unmodified	_LVLLKLGSI_					0	0	0			REV__ENST00000302418.4_1_10:32299749-32299908:-|nuORF	REV__ENST00000302418.4_1_10:32299749-32299908:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.3310241699219	2	478.331153	954.647754	0.41999	0.0002009	-0.27752	-0.00013275	0.14247	6.815E-05	478.3313590416564	53.978	2.617	53.978	53.595	56.212	0					258	95	5	0	0	0	0.28128	1	13413	13413		11.64	0	1	38097000	+		27966	19831	16154	16155	34532	34532					0.16861568901833834
LVLLPVLGLT	10	Unmodified	_LVLLPVLGLT_					0	0	0		nc|ENSG00000180264|Q7Z7M1|ADGRD2;ENSG00000180264|ENST00000696331|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.8211059570312	2	519.352086	1036.68962	0.47803	0.00024827	0.030955	1.6077E-05	0.50899	0.00026434	519.3520430421177	72.099	1.0585	72.155	71.868	72.926	0.056572					68	38	2	0	0	0	0.30586	1	18573	18573		19.257	1.1106	1	1343600			27967	7175	16155	16156	34533	34533					0.17274124590358042
LVLLPVLGLT	10	Unmodified	_LVLLPVLGLT_					0	0	0		nc|ENSG00000180264|Q7Z7M1|ADGRD2;ENSG00000180264|ENST00000696331|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	519.352086	1036.68962	0.47884	0.00024869	-0.055041	-2.8586E-05	0.4238	0.0002201	519.3519893403463	72.089	0.94328	72.089	71.884	72.827	0	-0.026795	-9.2096E-05	NaN	32.305	62	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1460300			27968	7175	16155	16156							0.17274124590358042
LVLLPVLGLT	10	Unmodified	_LVLLPVLGLT_					0	0	0		nc|ENSG00000180264|Q7Z7M1|ADGRD2;ENSG00000180264|ENST00000696331|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	519.352086	1036.68962	0.42104	0.00021867	0.1272	6.606E-05	0.54824	0.00028473	519.3520927565697	72.131	0.92423	72.103	71.845	72.769	-0.027275	-0.01255	9.7195E-05	NaN	32.305	58	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1368600			27969	7175	16155	16156							0.17274124590358042
LVLLTREKG	9	Unmodified	_LVLLTREKG_					0	0	0		ENST00000261588.8_2_16:27585249-27629753:+|nuORF	ENST00000261588.8_2_16:27585249-27629753:+|nuORF	ENST00000261588.8_2_16:27585249-27629753:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.8265991210938	2	514.826766	1027.63898	0.22832	0.00011754	-1.1535	-0.00059387	-0.92521	-0.00047632	515.3273805884796	32.428	0.61922	32.482	32.198	32.818	0.054371					50	22	3	0	0	0	0.11461	1	6242	6242		36.127	0	1	383480			27970	8968	16156	16157	34534	34534					0.12626595265373908
LVLMLCQK	8	Unmodified	_LVLMLCQK_					0	0	0		ENST00000460012.5_1_3:155314166-155422047:-|nuORF	ENST00000460012.5_1_3:155314166-155422047:-|nuORF	ENST00000460012.5_1_3:155314166-155422047:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2744445800781	2	474.274467	946.53438	0.018475	8.7623E-06	0.51974	0.0002465	0.53822	0.00025526	474.2745458170285	25.386	0.7333	25.386	25.035	25.769	0					55	24	3	0	0	0	0.4397	1	4097	4097		9.3474	0	1	257840			27971	10720	16157	16158	34535	34535					0.05897434192797846
LVLPEYYEAF	10	Unmodified	_LVLPEYYEAF_					0	0	0		nc|ENSG00000286014|P0DUD4|SPDYE15;nc|ENSG00000184616|P0DUX1|SPDYE12;ENSG00000273520|ENST00000333385|SPDYE8;ENSG00000262461|ENST00000575125|SPDYE9;ENSG00000186645|ENST00000671986|SPDYE17;nc|ENSG00000214300|A6NKU9-2|SPDYE3;ENSG00000214300|ENST00000332397|SPDYE3	nc|ENSG00000286014|P0DUD4|SPDYE15	nc|ENSG00000286014|P0DUD4|SPDYE15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5906982421875	3	415.213024	1242.61724	-0.088229	-3.6634E-05	0.33341	0.00013844	0.24518	0.0001018	415.54756451905206	43.863	0.11123	43.863	43.793	43.904	0					5	3	2	0	0	0	0.31696	1	9667	9667		6.6304	0	1	49919			27972	7634	16158	16159	34536	34536					0.005637457261400414
LVLPSVKTLD	10	Unmodified	_LVLPSVKTLD_					0	0	0		ENST00000409998.5_1_2:188252479-188312774:-|nuORF;ENST00000474212.5_1_2:188252479-188312769:-|nuORF	ENST00000409998.5_1_2:188252479-188312774:-|nuORF	ENST00000409998.5_1_2:188252479-188312774:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.266845703125	2	542.834257	1083.65396	0.61538	0.00033405	0.46244	0.00025103	1.0778	0.00058508	542.8343860053603	62.569	0.32087	62.56	62.384	62.705	-0.0085564					19	11	2	0	0	0	0.3144	1	15448	15448		8.7454	0	1	188360			27973	10265	16159	16160	34537	34537					0.1154804234272433
LVLQAFGLK	9	Unmodified	_LVLQAFGLK_					0	0	0		ENST00000491798.1_1_3:143691525-143704395:+|nuORF	ENST00000491798.1_1_3:143691525-143704395:+|nuORF	ENST00000491798.1_1_3:143691525-143704395:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2847595214844	2	494.813128	987.611703	0.51587	0.00025526	-0.49075	-0.00024283	0.025112	1.2426E-05	494.8127636242512	40.643	1.5461	40.736	39.967	41.513	0.09267					120	56	3	0	0	0	0.19839	1	8502	8502		21.747	12.399	1	591370			27974	11186	16160	16161	34538	34538					0.11740111724998314
LVLQAFGLK	9	Unmodified	_LVLQAFGLK_					0	0	0		ENST00000491798.1_1_3:143691525-143704395:+|nuORF	ENST00000491798.1_1_3:143691525-143704395:+|nuORF	ENST00000491798.1_1_3:143691525-143704395:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	494.813128	987.611703	0.40938	0.00020257	-0.24739	-0.00012241	0.16198	8.0152E-05	494.8128877485921	40.721	1.3317	40.721	40.05	41.382	0	0.024062	0.0001046	NaN	21.747	119	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	661450			27975	11186	16160	16161							0.11740111724998314
LVLQAFGLK	9	Unmodified	_LVLQAFGLK_					0	0	0		ENST00000491798.1_1_3:143691525-143704395:+|nuORF	ENST00000491798.1_1_3:143691525-143704395:+|nuORF	ENST00000491798.1_1_3:143691525-143704395:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	494.813128	987.611703	0.33351	0.00016502	-0.31654	-0.00015663	0.016964	8.3941E-06	494.8128289385712	40.534	1.413	40.634	40.038	41.451	0.099403	-0.063243	3.6168E-05	NaN	21.747	132	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	678510			27976	11186	16160	16161							0.11740111724998314
LVLQQGRK	8	Unmodified	_LVLQQGRK_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2198181152344	2	471.298176	940.581799	0.077825	3.6679E-05	-0.71817	-0.00033847	-0.64035	-0.00030179	471.2978689022156	19.188	0.4081	19.133	18.961	19.369	-0.055693					21	13	2	0	0	0	0.32435	1	2192	2192		23.148	5.0134	1	65611			27977	923	16161	16162	34539	34539					0.10913172779669367
LVLRIQEAF	9	Unmodified	_LVLRIQEAF_					0	0	0		nc|ENSG00000240891|Q0VAA5-2|PLCXD2;nc|ENSG00000240891|Q0VAA5|PLCXD2;ENSG00000240891|ENST00000636933|PLCXD2	nc|ENSG00000240891|Q0VAA5-2|PLCXD2	nc|ENSG00000240891|Q0VAA5-2|PLCXD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2839965820312	2	544.826766	1087.63898	0.63412	0.00034549	-1.8695	-0.0010186	-1.2354	-0.00067307	545.3270540183721	58.221	0.30208	58.307	58.138	58.44	0.085621					16	10	2	0	0	0	0.22596	1	14122	14122		10.824	0	1	267940			27978	8526	16162	16163	34540	34540					0.09866595265361866
LVLRMFQHM	9	Unmodified	_LVLRMFQHM_					0	0	0			REV__ENST00000367001.4_1_1:211749304-211749349:-|nuORF	REV__ENST00000367001.4_1_1:211749304-211749349:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.816162109375	2	587.814822	1173.61509	0.51628	0.00030348	1.5764	0.00092662	2.0927	0.0012301	587.8160787270575	91.156	0.48299	91.157	91.009	91.492	0.00046539					84	30	4	0	0	0	0.33018	2	24166	24166;24249		4.3292	0.38484	1	957350	+		27979	20302	16163	16164	34541;34542	34541					0.035227152357037994
LVLRMFQHM	9	Unmodified	_LVLRMFQHM_					0	0	0			REV__ENST00000367001.4_1_1:211749304-211749349:-|nuORF	REV__ENST00000367001.4_1_1:211749304-211749349:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	587.814822	1173.61509	0.51628	0.00030348	1.5764	0.00092662	2.0927	0.0012301	587.8160787270575	91.156	0.48299	91.157	91.009	91.492	0.00046539	0.0071469	-0.0004467	NaN	4.3292	84	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	957350	+		27980	20302	16163	16164							0.035227152357037994
LVLSGVLHK	9	Unmodified	_LVLSGVLHK_					0	0	0		nc|ENSG00000057149|P29508-2|SERPINB3;ENSG00000057149|ENST00000283752|SERPINB3	nc|ENSG00000057149|P29508-2|SERPINB3	nc|ENSG00000057149|P29508-2|SERPINB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.8027648925781	2	483.310752	964.606951	-0.21332	-0.0001031	0.44874	0.00021688	0.23542	0.00011378	483.3109675834289	65.266	0.43608	65.354	65.11	65.547	0.088882					21	15	2	0	0	0	0.24913	1	16213	16213		12.532	0	1	181500			27981	718	16164	16165	34543	34543					0.12323227582226082
LVLSLLKLG	9	Unmodified	_LVLSLLKLG_					0	0	0		nc|ENSG00000113303|Q6UX41-2|BTNL8;nc|ENSG00000113303|Q6UX41-3|BTNL8;nc|ENSG00000113303|Q6UX41-5|BTNL8;nc|ENSG00000113303|Q6UX41-6|BTNL8;ENSG00000113303|ENST00000340184|BTNL8	nc|ENSG00000113303|Q6UX41-2|BTNL8	nc|ENSG00000113303|Q6UX41-2|BTNL8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.76373291015625	2	478.331153	954.647754	0.40704	0.0001947	-0.13575	-6.4935E-05	0.27129	0.00012977	478.33102195360453	58.715	1.1792	58.701	58.47	59.649	-0.014267					61	41	2	0	0	0	0.2322	1	14294	14294		14.838	4.0143	1	159710			27982	2490	16165	16166	34544	34544					0.16861568901845203
LVMAPRTVL	9	Oxidation (M)	_LVM(Oxidation (M))APRTVL_		LVM(1)APRTVL		LVM(80)APRTVL	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.30242919921875	2	508.30207	1014.58959	0.28379	0.00014425	0.24089	0.00012245	0.52469	0.0002667	508.3021558577139	44.011	1.5503	44.011	43.545	45.095	0					141	56	4	0	0	0	0.0098873	4	9675	9628;9675;9727;9777		79.596	46.811	1	3282200			27983	8488	16166	16167	34545;34546;34547;34548	34546		909			0.08287563984902135
LVMAPRTVL	9	Oxidation (M)	_LVM(Oxidation (M))APRTVL_		LVM(1)APRTVL		LVM(80)APRTVL	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.30224609375	2	508.30207	1014.58959	0.32037	0.00016284	0.11217	5.7017E-05	0.43254	0.00021986	508.3020823977105	44.019	1.3343	44.096	43.541	44.876	0.077515					125	49	4	0	0	0	0.0098873	4	9702	9608;9653;9702;9758		79.596	47.291	1	3913100			27984	8488	16166	16167	34549;34550;34551;34552	34551		909			0.08287563984902135
LVMAPRTVL	9	Oxidation (M)	_LVM(Oxidation (M))APRTVL_		LVM(1)APRTVL		LVM(70)APRTVL	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.30224609375	2	508.30207	1014.58959	0.29283	0.00014884	0.13772	7.0001E-05	0.43054	0.00021885	508.30205511329893	43.968	1.4044	44.052	43.463	44.868	0.083996					120	51	3	0	0	0	0.015924	5	9590	9590;9635;9683;9726;9741		70.332	39.695	1	3775500			27985	8488	16166	16167	34553;34554;34555;34556;34557	34553		909			0.08287563984902135
LVMLCQLLE	9	Unmodified	_LVMLCQLLE_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.742919921875	2	531.290314	1060.56607	0.056704	3.0126E-05	-0.38603	-0.00020509	-0.32932	-0.00017497	531.2907459911594	12.957	0.16746	12.857	12.785	12.953	-0.099291					8	5	2	0	0	0	0.26168	1	262	262		1.8442	0.19162	1	15109	+		27986	23200	16167	16168	34558	34558					0.03821382156093023
LVMSDPFTF	9	Unmodified	_LVMSDPFTF_					0	0	0		ENST00000372703.1_1_1:40975084-40975216:+|nuORF	ENST00000372703.1_1_1:40975084-40975216:+|nuORF	ENST00000372703.1_1_1:40975084-40975216:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2984619140625	2	528.757161	1055.49977	0.52859	0.00027949	-0.61546	-0.00032543	-0.086875	-4.5936E-05	528.7570229673265	66.807	0.79691	66.807	66.482	67.279	0					50	27	3	0	0	0	0.19839	1	16759	16759		28.487	1.6032	1	333680			27987	9850	16168	16169	34559	34559					-0.025761104143157354
LVNAGAGLSR	10	Unmodified	_LVNAGAGLSR_					0	0	0			REV__ENSG00000113430|ENST00000231357|IRX4	REV__ENSG00000113430|ENST00000231357|IRX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2774353027344	2	479.277441	956.540328	0.1868	8.9531E-05	0.095213	4.5634E-05	0.28202	0.00013516	479.27736151521805	74.127	3.7807	74.127	72.586	76.367	0					370	134	4	0	0	0	0.38773	1	19586	19586		5.7319	0.43497	1	4891400	+		27988	14808	16169	16170	34560	34560					0.060319920203255606
LVNAGAGLSR	10	Unmodified	_LVNAGAGLSR_					0	0	0			REV__ENSG00000113430|ENST00000231357|IRX4	REV__ENSG00000113430|ENST00000231357|IRX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.27691650390625	2	479.277441	956.540328	0.42985	0.00020602	-0.96514	-0.00046257	-0.53529	-0.00025655	479.276839940284	76.671	0.61418	76.639	76.346	76.96	-0.031479					42	22	2	0	0	0	0.36786	2	19772	19772;19822		9.3831	0.63772	1	664690	+		27989	14808	16169	16170	34561;34562	34561					0.060319920203255606
LVNDLVLDL	9	Unmodified	_LVNDLVLDL_					0	0	0		ENSG00000023445|ENST00000263464|BIRC3	ENSG00000023445|ENST00000263464|BIRC3	ENSG00000023445|ENST00000263464|BIRC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.30975341796875	2	507.297507	1012.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.379	1	93.466	92.966	93.966	0.08667								0	0	0	0.2489	1	24867	24867		6.7232	0.51738	1				27990	524	16170	16171	34563	34563					0.07467493900230693
LVNEFLLKN	9	Unmodified	_LVNEFLLKN_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3167724609375	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.44	1	94.438	93.938	94.938	-0.0020142								0	0	0	0.22933	1	25191	25191		13.042	2.9685	1				27991	3785	16171	16172	34564	34564					0.08222889028479585
LVNIREREDK	10	Unmodified	_LVNIREREDK_					0	0	0		ENST00000543522.5_1_15:32917795-32917831:+|nuORF	ENST00000543522.5_1_15:32917795-32917831:+|nuORF	ENST00000543522.5_1_15:32917795-32917831:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.5735778808594	3	424.573726	1270.69935	0.03545	1.5051E-05	0.028628	1.2155E-05	0.064077	2.7206E-05	424.5737145294645	23.991	0.51482	23.952	23.681	24.196	-0.038927					28	17	2	0	0	0	0.38284	1	3633	3633		6.6304	0	1	174150			27992	11744	16172	16173	34565	34565					0.07482660857795054
LVNITISPY	9	Unmodified	_LVNITISPY_					0	0	0			REV__nc|ENSG00000104055|O43548-2|TGM5	REV__nc|ENSG00000104055|O43548-2|TGM5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2738952636719	2	510.292225	1018.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.72	1	79.782	79.282	80.282	0.061417								0	0	0	0.20238	1	20675	20675		21.747	4.8044	1		+		27993	14393	16173	16174	34566	34566					0.06135511245804537
LVNKDYVYF	9	Unmodified	_LVNKDYVYF_					0	0	0			REV__ENSG00000155903|ENST00000286364|RASA2	REV__ENSG00000155903|ENST00000286364|RASA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8031005859375	2	580.802957	1159.59136	0.46506	0.00027011	-0.73493	-0.00042685	-0.26987	-0.00015674	580.8021769664546	64.338	0.58807	64.431	64.234	64.822	0.09288					53	21	3	0	0	0	0.088391	1	16052	16052		39.957	3.8303	1	898640	+		27994	16718	16174	16175	34567	34567					0.017948962744867458
LVNKHARF	8	Unmodified	_LVNKHARF_					0	0	0			REV__HIC1|p.E402Rfs*51|1|0.62|ENSG00000177374|chr17:2057836-2057836|G/-|frameshift_variant	REV__HIC1|p.E402Rfs*51|1|0.62|ENSG00000177374|chr17:2057836-2057836|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8030700683594	2	492.790518	983.566484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.585	1	43.662	43.162	44.162	0.077515								0	0	0	0.35014	1	9584	9584		14.582	1.0738	1		+		27995	17528	16175	16176	34568	34568					0.07404305982458936
LVNKHNGRVL	10	Unmodified	_LVNKHNGRVL_					0	0	0			REV__nc|ENSG00000074803|Q13621-3|SLC12A1	REV__nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8432006835938	2	575.346189	1148.67783	0.415	0.00023877	-2.6241	-0.0015098	-2.2091	-0.001271	575.3454592594685	88.398	2.6001	88.487	87.352	89.952	0.089195					247	141	4	0	0	0	0.38515	1	23086	23086		6.2058	2.6093	1	1377600	+		27996	13795	16176	16177	34569	34569					0.10943320619730912
LVNKLEQYTN	10	Unmodified	_LVNKLEQYTN_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.355712890625	2	611.327328	1220.6401	0.58784	0.00035936	-2.0141	-0.0012313	-1.4262	-0.0008719	611.3262852283073	83.634	0.40221	83.634	83.53	83.932	0					23	14	2	0	0	0	0.31745	1	21898	21898		8.7454	0.58988	1	220700			27997	7673	16177	16178	34570	34570					0.038607648436027375
LVNKLEQYTN	10	Unmodified	_LVNKLEQYTN_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.3560791015625	2	611.327328	1220.6401	0.49908	0.0003051	-1.9098	-0.0011675	-1.4107	-0.0008624	611.3261404643965	83.766	0.54569	83.843	83.352	83.898	0.077095					26	21	2	0	0	0	0.31745	1	21859	21859		8.7454	0.58988	1	198100			27998	7673	16177	16178	34571	34571					0.038607648436027375
LVNKLGQVFV	10	Unmodified	_LVNKLGQVFV_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3492431640625	2	558.842416	1115.67028	0.39604	0.00022133	-0.78832	-0.00044055	-0.39228	-0.00021922	558.8418318203453	44.776	1.2462	44.851	44.148	45.394	0.075047					114	45	3	0	0	0	0.31165	1	9729	9729		15.847	1.0089	1	765400			27999	8700	16178	16179	34572	34572					0.1170716829947196
LVNKVKFH	8	Unmodified	_LVNKVKFH_					0	0	0			REV__ENSG00000109458|ENST00000262994|GAB1	REV__ENSG00000109458|ENST00000262994|GAB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8030700683594	2	492.803094	983.591636	0.40189	0.00019805	0.44914	0.00022134	0.85103	0.00041939	492.80314956149834	43.712	0.70095	43.789	43.401	44.102	0.077515					61	25	3	0	0	0	0.28969	1	9584	9584		36.044	5.8194	1	1220500	+		28000	14640	16179	16180	34573	34573					0.09918360785036384
LVNKVKFH	8	Unmodified	_LVNKVKFH_					0	0	0			REV__ENSG00000109458|ENST00000262994|GAB1	REV__ENSG00000109458|ENST00000262994|GAB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8033752441406	2	492.803094	983.591636	0.39744	0.00019586	0.53367	0.00026299	0.93111	0.00045885	492.80315113187794	43.76	0.58163	43.844	43.522	44.103	0.083992					51	21	3	0	0	0	0.17536	1	9596	9596		63.563	25.412	1	1196900	+		28001	14640	16179	16180	34574	34574					0.09918360785036384
LVNKVKFH	8	Unmodified	_LVNKVKFH_					0	0	0			REV__ENSG00000109458|ENST00000262994|GAB1	REV__ENSG00000109458|ENST00000262994|GAB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	492.803094	983.591636	0.31417	0.00015482	0.60711	0.00029918	0.92127	0.00045401	492.80323993828864	44	0.61716	44	43.713	44.33	0	0.12211	9.3445E-05	NaN	63.563	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1387800	+		28002	14640	16179	16180							0.09918360785036384
LVNLQGTVVF	10	Unmodified	_LVNLQGTVVF_					0	0	0		nc|ENSG00000163393|Q8IZD6-2|SLC22A15;ENSG00000163393|ENST00000369503|SLC22A15	nc|ENSG00000163393|Q8IZD6-2|SLC22A15	nc|ENSG00000163393|Q8IZD6-2|SLC22A15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.31689453125	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.13	1	114.11	113.61	114.61	-0.019096								0	0	0	0.37807	1	29648	29648		2.9952	0.41776	1				28003	5674	16180	16181	34575	34575					0.08222889028479585
LVNLQGTVVF	10	Unmodified	_LVNLQGTVVF_					0	0	0		nc|ENSG00000163393|Q8IZD6-2|SLC22A15;ENSG00000163393|ENST00000369503|SLC22A15	nc|ENSG00000163393|Q8IZD6-2|SLC22A15	nc|ENSG00000163393|Q8IZD6-2|SLC22A15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.317138671875	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.9	1	115.87	115.37	116.37	-0.020988								0	0	0	0.37807	1	30040	30040		2.9952	0.69251	1				28004	5674	16180	16181	34576	34576					0.08222889028479585
LVNLVERNRIG	11	Unmodified	_LVNLVERNRIG_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8827514648438	2	641.883136	1281.75172	-0.015618	-1.0025E-05	-0.36836	-0.00023644	-0.38397	-0.00024647	641.8828080922044	99.213	0.65727	99.213	98.867	99.524	0					146	81	2	0	0	0	0.47742	1	26506	26506		1.0715	1.0715	1	148810			28005	728	16181	16182	34577	34577					0.12211243991396259
LVNLVERNRIG	11	Unmodified	_LVNLVERNRIG_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	641.883136	1281.75172	0.25989	0.00016682	-0.5146	-0.00033031	-0.25471	-0.0001635	641.8826886480132	99.091	1.1925	99.142	98.662	99.855	0.050888	-0.015985	3.7399E-05	NaN	1.0715	234	157	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184770			28006	728	16181	16182							0.12211243991396259
LVNLVERNRIG	11	Unmodified	_LVNLVERNRIG_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	641.883136	1281.75172	0.42752	0.00027442	-0.67028	-0.00043024	-0.24276	-0.00015582	641.882573913348	99.125	1.1479	99.118	98.826	99.974	-0.006897	-0.039431	-0.00016245	NaN	1.0715	256	148	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232890			28007	728	16181	16182							0.12211243991396259
LVNPRVLR	8	Unmodified	_LVNPRVLR_					0	0	0		ENSG00000206077|ENST00000508859|ZDHHC11B	ENSG00000206077|ENST00000508859|ZDHHC11B	ENSG00000206077|ENST00000508859|ZDHHC11B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.66790771484375	2	483.813993	965.613434	-1.2653	-0.00061217	-0.012462	-6.0294E-06	-1.2778	-0.0006182	483.81406456682106	34.9	0.52531	34.976	34.657	35.182	0.075306					22	18	2	0	0	0	0.34092	1	6980	6980		13.508	0.97634	1	89064			28008	8313	16182	16183	34578	34578					0.12925165533602012
LVNQILFRYA	10	Unmodified	_LVNQILFRYA_					0	0	0			REV__ENSG00000196305|ENST00000443024|IARS1	REV__ENSG00000196305|ENST00000443024|IARS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.861328125	2	618.858598	1235.70264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.031	1	94.031	93.531	94.531	-0.00051117								0	0	0	0.38065	1	25064	25064		1.6526	0	1		+		28009	18641	16183	16184	34579	34579					0.09421955702487139
LVNQKTKSQ	9	Unmodified	_LVNQKTKSQ_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3035888671875	2	523.303655	1044.59276	0.45311	0.00023711	-0.3878	-0.00020293	0.065315	3.418E-05	523.303309180788	76.326	1.9064	76.326	75.649	77.555	0					243	69	5	0	0	0	0.32371	1	19752	19752		5.2969	5.2969	1	3322100	+		28010	15358	16184	16185	34580	34580					0.07224530363282611
LVNRHAKFVK	10	Unmodified	_LVNRHAKFVK_					0	0	0			REV__ZBTB8A|p.L215Qfs*12|1|0.24|ENSG00000160062|chr1:32593555-32593556|-/AAGACCAAACATTTGAGAC|frameshift_variant	REV__ZBTB8A|p.L215Qfs*12|1|0.24|ENSG00000160062|chr1:32593555-32593556|-/AAGACCAAACATTTGAGAC|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3717041015625	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.58	1	113.6	113.1	114.1	0.014824								0	0	0	0.38202	1	29548	29548		0.40072	0.050084	1		+		28011	16876	16185	16186	34581	34581					0.132924840334681
LVNRNLAAS	9	Unmodified	_LVNRNLAAS_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000558088.1_1_15:62244166-62253867:-|nuORF	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2773742675781	2	479.277441	956.540328	0.25052	0.00012007	-0.092943	-4.4546E-05	0.15758	7.5525E-05	479.27726181960276	71.971	1.9573	71.971	71.233	73.191	0					154	70	3	0	0	0	0.31417	1	18487	18487		6.7232	6.7232	1	959500			28012	3405	16186	16187	34582	34582					0.06031992020314192
LVNRNLAAS	9	Unmodified	_LVNRNLAAS_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000558088.1_1_15:62244166-62253867:-|nuORF	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2771911621094	2	479.277441	956.540328	0.36689	0.00017584	-0.17516	-8.395E-05	0.19173	9.1893E-05	479.2772156005125	71.983	1.9999	71.956	71.211	73.211	-0.027275					217	71	4	0	0	0	0.31763	1	18261	18261		6.2058	1.4498	1	1020000			28013	3405	16186	16187	34583	34583					0.06031992020314192
LVNRNLAAS	9	Unmodified	_LVNRNLAAS_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000558088.1_1_15:62244166-62253867:-|nuORF	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7581481933594	2	479.277441	956.540328	0.42985	0.00020602	-0.96514	-0.00046257	-0.53529	-0.00025655	479.276839940284	76.671	0.61418	76.639	76.346	76.96	-0.031479					42	22	2	0	0	0	0.25202	1	19696	19696		10.824	2.2306	1	664690			28014	3405	16186	16187	34584	34584					0.06031992020314192
LVNYCMFTF	9	Unmodified	_LVNYCMFTF_					0	0	0			REV__CNOT6L|p.V191F|1|0.03|ENSG00000138767|chr4:77744864-77744864|C/A|missense_variant	REV__CNOT6L|p.V191F|1|0.03|ENSG00000138767|chr4:77744864-77744864|C/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.259765625	2	569.259013	1136.50347	0.33031	0.00018803	0.67159	0.00038231	1.0019	0.00057034	569.259478753414	68.319	1.4075	68.391	67.994	69.401	0.071938					135	51	4	0	0	0	0.14076	2	17136	17136;17187		32.305	0.18852	1	2556200	+		28015	13238	16187	16188	34585;34586	34585					-0.05931763912099086
LVNYCMFTF	9	Unmodified	_LVNYCMFTF_					0	0	0			REV__CNOT6L|p.V191F|1|0.03|ENSG00000138767|chr4:77744864-77744864|C/A|missense_variant	REV__CNOT6L|p.V191F|1|0.03|ENSG00000138767|chr4:77744864-77744864|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.846923828125	2	569.259013	1136.50347	0.31708	0.0001805	0.6863	0.00039068	1.0034	0.00057118	569.2594587807116	68.389	1.4744	68.37	67.963	69.438	-0.019157					127	52	4	0	0	0	0.21389	1	17254	17254		19.257	19.257	1	3527600	+		28016	13238	16187	16188	34587	34587					-0.05931763912099086
LVNYEVPIEP	10	Unmodified	_LVNYEVPIEP_					0	0	0			REV__nc|ENSG00000042781|O75445-3|USH2A	REV__nc|ENSG00000042781|O75445-3|USH2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8130493164062	2	586.813522	1171.61249	0.4256	0.00024975	-0.44756	-0.00026263	-0.02196	-1.2886E-05	586.8131922598009	21.362	1.0296	21.362	20.65	21.68	0					69	35	3	0	0	0	0.38773	1	2730	2730		5.7319	5.7319	1	305360	+		28017	22882	16188	16189	34588	34588					0.033548615833979056
LVNYEVPIEP	10	Unmodified	_LVNYEVPIEP_					0	0	0			REV__nc|ENSG00000042781|O75445-3|USH2A	REV__nc|ENSG00000042781|O75445-3|USH2A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	586.813522	1171.61249	0.42373	0.00024865	-0.12201	-7.16E-05	0.30172	0.00017705	586.8133855233731	21.426	1.0739	21.377	20.671	21.745	-0.049377	0.0083686	0.00022808	NaN	5.7319	55	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335130	+		28018	22882	16188	16189							0.033548615833979056
LVPALYGLVL	10	Unmodified	_LVPALYGLVL_					0	0	0		ENSG00000127533|ENST00000248076|F2RL3	ENSG00000127533|ENST00000248076|F2RL3	ENSG00000127533|ENST00000248076|F2RL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8137817382812	2	529.336436	1056.65832	0.79272	0.00041961	-0.43087	-0.00022807	0.36185	0.00019154	529.3360725753207	74.491	0.75969	74.491	74.225	74.985	0					57	26	3	0	0	0	0.25344	1	19155	19155		18.135	0	1	1466400			28019	3327	16189	16190	34589	34589					0.13225551556274695
LVPASRVPQ	9	Unmodified	_LVPASRVPQ_					0	0	0			REV__ENST00000482433.1_1_19:2216201-2220604:+|nuORF	REV__ENST00000482433.1_1_19:2216201-2220604:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2342834472656	2	483.790184	965.565815	0.29775	0.00014405	2.1571	0.0010436	2.4548	0.0011876	483.79148756829414	44.202	0.79401	44.277	43.986	44.78	0.075047					49	28	2	0	0	0	0.24289	1	9828	9828		18.146	0	1	453690	+		28020	21498	16190	16191	34590	34590					0.08165466542766353
LVPEDPRR	8	Unmodified	_LVPEDPRR_					0	0	0		ENST00000471836.1_1_22:44577677-44581773:+|nuORF;ENST00000475485.6_1_22:44577677-44582522:+|nuORF	ENST00000471836.1_1_22:44577677-44581773:+|nuORF	ENST00000471836.1_1_22:44577677-44581773:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.26715087890625	2	491.277441	980.540328	0.28551	0.00014026	0.1165	5.7234E-05	0.40201	0.0001975	491.2795322316226	21.908	0.62464	21.908	21.654	22.278	0					43	22	3	0	0	0	0.43043	1	2999	2999		12.532	4.6214	1	123990			28021	10882	16191	16192	34591	34591					0.04927992020327565
LVPEETTLE	9	Unmodified	_LVPEETTLE_					0	0	0		ENSG00000164500|ENST00000297001|SPATA48	ENSG00000164500|ENST00000297001|SPATA48	ENSG00000164500|ENST00000297001|SPATA48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7675170898438	2	515.76878	1029.52301	0.22875	0.00011798	4.1525	0.0021417	4.3813	0.0022597	515.7705294963263	16.477	0.83033	16.477	16.184	17.014	0					62	28	4	0	0	0	0.25314	1	1405	1405		15.847	0	1	321470			28022	5848	16192	16193	34592	34592					0.009426069039818685
LVPESLMSEML	11	Unmodified	_LVPESLMSEML_					0	0	0			REV__ENST00000458537.7_1_3:170078288-170078366:+|nuORF	REV__ENST00000458537.7_1_3:170078288-170078366:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.5543518066406	3	416.878659	1247.61415	-0.018397	-7.6692E-06	0.092362	3.8504E-05	0.073965	3.0835E-05	416.87862860277374	29.505	0.55013	29.518	29.248	29.798	0.013474					29	18	2	0	0	0	0.33085	1	5271	5271		2.8433	2.2801	1	71903	+		28023	21189	16193	16194	34593	34593					0.00024411285471614974
LVPESNVRLL	10	Unmodified	_LVPESNVRLL_					0	0	0		nc|ENSG00000179403|Q6PCB0-2|VWA1;ENSG00000179403|ENST00000476993|VWA1	nc|ENSG00000179403|Q6PCB0-2|VWA1	nc|ENSG00000179403|Q6PCB0-2|VWA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.342529296875	2	570.342781	1138.67101	0.15455	8.8149E-05	0.59701	0.0003405	0.75156	0.00042865	570.3431674323451	15.815	0.35345	15.706	15.517	15.871	-0.10981					14	11	2	0	0	0	0.40403	1	1157	1157		2.7352	1.2533	1	26405			28024	7122	16194	16195	34594	34594					0.10721962948514374
LVPESNVRLL	10	Unmodified	_LVPESNVRLL_					0	0	0		nc|ENSG00000179403|Q6PCB0-2|VWA1;ENSG00000179403|ENST00000476993|VWA1	nc|ENSG00000179403|Q6PCB0-2|VWA1	nc|ENSG00000179403|Q6PCB0-2|VWA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	570.342781	1138.67101	0.016216	9.2487E-06	0.64268	0.00036655	0.6589	0.0003758	570.3429148125463	15.606	0.31965	15.606	15.471	15.791	0	-0.06223	3.1876E-05	NaN	2.7352	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33301			28025	7122	16194	16195							0.10721962948514374
LVPESNVRLL	10	Unmodified	_LVPESNVRLL_					0	0	0		nc|ENSG00000179403|Q6PCB0-2|VWA1;ENSG00000179403|ENST00000476993|VWA1	nc|ENSG00000179403|Q6PCB0-2|VWA1	nc|ENSG00000179403|Q6PCB0-2|VWA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	570.342781	1138.67101	0.038343	2.1869E-05	0.61126	0.00034863	0.6496	0.00037049	570.3429569276111	15.757	0.23427	15.693	15.545	15.779	-0.064413	0.024617	-3.9746E-06	NaN	2.7352	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26244			28026	7122	16194	16195							0.10721962948514374
LVPGARSSI	9	Unmodified	_LVPGARSSI_					0	0	0		ENST00000450930.1_1_6:16762210-16762366:+|nuORF	ENST00000450930.1_1_6:16762210-16762366:+|nuORF	ENST00000450930.1_1_6:16762210-16762366:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.76434326171875	2	450.269084	898.523616	0.13607	6.127E-05	0.30574	0.00013767	0.44182	0.00019894	450.2693253639909	65.473	1.4286	65.473	64.755	66.183	0					81	51	3	0	0	0	0.25066	1	16516	16516		3.9444	0	1	208200			28027	10644	16195	16196	34595	34595					0.07029491134380805
LVPGDLLI	8	Unmodified	_LVPGDLLI_					0	0	0		ENSG00000127249|ENST00000342695|ATP13A4;ATP13A4|p.L288F|1|0.1|ENSG00000127249|chr3:193470938-193470938|C/A|missense_variant;nc|ENSG00000127249|Q4VNC1-3|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2134094238281	2	420.265479	838.516405	-0.10976	-4.6127E-05	-2.9739	-0.0012498	-3.0837	-0.001296	420.26426342681646	19.154	0.18344	19.099	18.961	19.144	-0.055693					7	5	2	0	0	0	0.34337	1	2131	2131		5.2307	0	1	14841			28028	3310	16196	16197	34596	34596					0.09068758533953769
LVPGDLLI	8	Unmodified	_LVPGDLLI_					0	0	0		ENSG00000127249|ENST00000342695|ATP13A4;ATP13A4|p.L288F|1|0.1|ENSG00000127249|chr3:193470938-193470938|C/A|missense_variant;nc|ENSG00000127249|Q4VNC1-3|ATP13A4;nc|ENSG00000127249|Q4VNC1-2|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	420.265479	838.516405	-0.10543	-4.4311E-05	-2.6067	-0.0010955	-2.7121	-0.0011398	420.26430248404034	19.152	0.16677	19.036	18.919	19.085	-0.11642	-0.03153	0.00021924	NaN	5.2307	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19616			28029	3310	16196	16197							0.09068758533953769
LVPIHRKV	8	Unmodified	_LVPIHRKV_					0	0	0		nc|ENSG00000163904|Q9HC62-2|SENP2;ENSG00000163904|ENST00000296257|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2650146484375	2	481.318912	960.62327	0.24225	0.0001166	0.17034	8.199E-05	0.4126	0.00019859	481.3189189954483	42.385	0.45738	42.477	42.26	42.717	0.091362					25	15	2	0	0	0	0.33995	1	9270	9270		15.768	0	1	256790			28030	5754	16197	16198	34597	34597					0.14138353538987758
LVPIHRKV	8	Unmodified	_LVPIHRKV_					0	0	0		nc|ENSG00000163904|Q9HC62-2|SENP2;ENSG00000163904|ENST00000296257|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	481.318912	960.62327	0.089813	4.3229E-05	0.36041	0.00017347	0.45023	0.0002167	481.3189865826657	42.717	0.4914	42.717	42.543	43.034	0	0.13538	0.00010096	NaN	15.768	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275110			28031	5754	16197	16198							0.14138353538987758
LVPLHTRMV	9	Unmodified	_LVPLHTRMV_					0	0	0			REV__ENSG00000088854|ENST00000252032|DNAAF9	REV__ENSG00000088854|ENST00000252032|DNAAF9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3173828125	2	533.315512	1064.61647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.568	1	12.471	11.971	12.971	-0.096607								0	0	0	0.264	1	167	167		1.8442	0	1		+		28032	14015	16198	16199	34598	34598					0.08674672596112032
LVPPLLTL	8	Unmodified	_LVPPLLTL_					0	0	0			REV__ENST00000569929.5_1_16:81888133-81917132:+|nuORF	REV__ENST00000569929.5_1_16:81888133-81917132:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.93280029296875	2	433.291497	864.568441	0.054338	2.3544E-05	0.11666	5.0547E-05	0.171	7.4091E-05	433.29131384613714	88.208	0.45974	88.208	87.977	88.437	0					32	23	2	0	0	0	0.34092	1	23299	23299		8.5933	0	1	115660	+		28033	22407	16199	16200	34599	34599					0.13073921947693634
LVPPLLTL	8	Unmodified	_LVPPLLTL_					0	0	0			REV__ENST00000569929.5_1_16:81888133-81917132:+|nuORF	REV__ENST00000569929.5_1_16:81888133-81917132:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.9329528808594	2	433.291497	864.568441	0.0045178	1.9575E-06	-0.033716	-1.4609E-05	-0.029199	-1.2651E-05	433.29137512849024	88.231	0.42921	88.229	88.016	88.445	-0.0028381					31	20	2	0	0	0	0.34092	1	23247	23247		2.0598	0	1	101600	+		28034	22407	16199	16200	34600	34600					0.13073921947693634
LVPQLRSLE	9	Unmodified	_LVPQLRSLE_					0	0	0			REV__COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	REV__COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2760620117188	2	527.816399	1053.61824	0.62568	0.00033024	-0.17697	-9.3409E-05	0.4487	0.00023683	527.8164181700773	49.082	0.84486	49.082	48.856	49.701	0					67	30	3	0	0	0	0.14961	1	11343	11343		41.84	0	1	1328600	+		28035	13240	16200	16201	34601	34601					0.09358004885689297
LVPREIIV	8	Unmodified	_LVPREIIV_					0	0	0		ENSG00000149346|ENST00000334534|SLX4IP	ENSG00000149346|ENST00000334534|SLX4IP	ENSG00000149346|ENST00000334534|SLX4IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.8054504394531	2	469.805303	937.596052	0.19639	9.2265E-05	0.32791	0.00015405	0.5243	0.00024632	469.80537440291687	68.792	0.61975	68.864	68.618	69.237	0.071938					49	22	3	0	0	0	0.37937	1	17379	17379		21.747	3.6117	1	674230			28036	4861	16201	16202	34602	34602					0.12475825207934577
LVPRFQVIL	9	Unmodified	_LVPRFQVIL_					0	0	0		ENST00000372070.7_1_1:46016813-46018162:+|nuORF	ENST00000372070.7_1_1:46016813-46018162:+|nuORF	ENST00000372070.7_1_1:46016813-46018162:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8477172851562	2	542.847502	1083.68045	0.52568	0.00028537	-0.038417	-2.0855E-05	0.48726	0.00026451	542.847404770338	42.401	0.6957	42.492	42.26	42.956	0.091362					56	24	3	0	0	0	0.11517	1	9221	9221		36.044	5.4077	1	903930			28037	9835	16202	16203	34603	34603					0.1419577602471236
LVPRFQVIL	9	Unmodified	_LVPRFQVIL_					0	0	0		ENST00000372070.7_1_1:46016813-46018162:+|nuORF	ENST00000372070.7_1_1:46016813-46018162:+|nuORF	ENST00000372070.7_1_1:46016813-46018162:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	542.847502	1083.68045	0.42389	0.00023011	0.0032163	1.746E-06	0.42711	0.00023186	542.8474465066419	42.515	0.67953	42.6	42.323	43.003	0.085197	0.019579	-5.3126E-05	NaN	36.044	55	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	790920			28038	9835	16202	16203							0.1419577602471236
LVPRFSLLQ	9	Unmodified	_LVPRFSLLQ_					0	0	0			REV__ENSG00000163499|ENST00000295728|CRYBA2	REV__ENSG00000163499|ENST00000295728|CRYBA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2522583007812	2	536.829309	1071.64407	0.57883	0.00031073	1.2811	0.00068775	1.86	0.00099849	536.8297972053477	66.028	0.5304	66.014	65.748	66.278	-0.013588					32	18	2	0	0	0	0.13898	1	16505	16505		29.082	6.3453	1	498140	+		28039	17058	16203	16204	34604	34604					0.11110899127993434
LVPRPNLR	8	Unmodified	_LVPRPNLR_					0	0	0			REV__ENST00000526255.1_1_1:211485798-211487107:+|nuORF	REV__ENST00000526255.1_1_1:211485798-211487107:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.2840576171875	2	482.806168	963.597784	0.21786	0.00010519	-0.45133	-0.0002179	-0.23346	-0.00011272	482.8057780901752	51.728	0.18737	51.738	51.587	51.774	0.0095634					10	6	2	0	0	0	0.33245	1	12093	12093		19.439	1.304	1	165760	+		28040	14983	16204	16205	34605	34605					0.11452879016542283
LVPSSLSPL	9	Unmodified	_LVPSSLSPL_					0	0	0			REV__ENST00000586869.5_1_17:33458867-33458993:-|nuORF	REV__ENST00000586869.5_1_17:33458867-33458993:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.29510498046875	2	456.773668	911.532783	0.04594	2.0984E-05	0.99903	0.00045633	1.045	0.00047731	456.7738356369627	61.983	0.66571	61.983	61.703	62.369	0					42	24	2	0	0	0	0.14099	1	15281	15281		34.102	5.6156	1	617610	+		28041	22525	16205	16206	34606	34606					0.07347839700048553
LVPSSLSPL	9	Unmodified	_LVPSSLSPL_					0	0	0			REV__ENST00000586869.5_1_17:33458867-33458993:-|nuORF	REV__ENST00000586869.5_1_17:33458867-33458993:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.295166015625	2	456.773668	911.532783	-0.24006	-0.00010965	1.5742	0.00071904	1.3341	0.00060939	456.7739642981626	61.849	0.71316	61.946	61.701	62.414	0.096985					39	25	2	0	0	0	0.10111	1	15197	15197		50.855	8.7605	1	561530	+		28042	22525	16205	16206	34607	34607					0.07347839700048553
LVPSYPSLL	9	Unmodified	_LVPSYPSLL_					0	0	0			REV__ENST00000436674.5_1_22:38617478-38642853:-|nuORF	REV__ENST00000436674.5_1_22:38617478-38642853:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.27716064453125	2	494.789318	987.564084	0.38933	0.00019264	0.37386	0.00018498	0.76319	0.00037762	494.789466855921	23.52	0.50839	23.481	23.311	23.82	-0.038927					34	17	3	0	0	0	0.21905	1	3493	3493		23.148	23.148	1	173930	+		28043	18862	16206	16207	34608	34608					0.06980412734139918
LVPVEEPI	8	Unmodified	_LVPVEEPI_					0	0	0		ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1	ENSG00000196730|ENST00000408954|DAPK1	ENSG00000196730|ENST00000408954|DAPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2606506347656	2	448.260394	894.506234	0.25976	0.00011644	0.055035	2.467E-05	0.3148	0.00014111	448.2603622667154	62.835	1.2455	62.835	62.476	63.722	0					116	45	4	0	0	0	0.28861	1	15616	15616		32.117	1.8922	1	4641300			28044	7901	16207	16208	34609	34609					0.05476150808715374
LVPVQKLV	8	Unmodified	_LVPVQKLV_					0	0	0			REV__ENST00000545700.5_1_12:6562264-6567817:+|nuORF	REV__ENST00000545700.5_1_12:6562264-6567817:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.7866516113281	2	448.302396	894.590239	0.010189	4.5678E-06	0.54987	0.00024651	0.56006	0.00025108	448.30255088908285	60.36	0.18551	60.36	60.228	60.413	0					10	6	2	0	0	0	0.32778	1	14728	14728		9.3474	0	1	126620	+		28045	15973	16208	16209	34610	34610					0.1387272669626327
LVPWRVAW	8	Unmodified	_LVPWRVAW_					0	0	0			REV__ENST00000378891.9_3_1:1270725-1270893:-|nuORF	REV__ENST00000378891.9_3_1:1270725-1270893:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7586059570312	2	513.797812	1025.58107	-0.064326	-3.305E-05	-0.97654	-0.00050174	-1.0409	-0.00053479	513.7972664860777	25.634	0.73361	25.608	25.186	25.92	-0.025942					35	25	2	0	0	0	0.3439	1	4131	4131		2.8892	0.31174	1	94674	+		28046	20522	16209	16210	34611	34611					0.0693037813061892
LVPYSRLFI	9	Unmodified	_LVPYSRLFI_					0	0	0		ENST00000343776.9_1_1:227751246-227751330:+|nuORF	ENST00000343776.9_1_1:227751246-227751330:+|nuORF	ENST00000343776.9_1_1:227751246-227751330:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.7775268554688	2	554.331685	1106.64882	0.20552	0.00011393	-3.5049	-0.0019429	-3.2994	-0.001829	554.329465049992	17.645	0.37829	17.584	17.414	17.792	-0.060429					17	12	2	0	0	0	0.26145	1	1720	1720		2.0598	1.3694	1	34023			28047	9546	16210	16211	34612	34612					0.09975783270760985
LVQELCPGF	9	Unmodified	_LVQELCPGF_					0	0	0		ENSG00000141458|ENST00000269228|NPC1	ENSG00000141458|ENST00000269228|NPC1	ENSG00000141458|ENST00000269228|NPC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.2720031738281	2	503.257328	1004.5001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.889	1	44.889	44.389	45.389	0								0	0	0	0.24522	1	9988	9988		7.9102	0	1				28048	4383	16211	16212	34613	34613					-0.001966906944517177
LVQFERAF	8	Unmodified	_LVQFERAF_					0	0	0			REV__ENSG00000132429|ENST00000254765|POPDC3	REV__ENSG00000132429|ENST00000254765|POPDC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.82720947265625	2	505.276909	1008.53927	0.3385	0.00017104	-2.6476	-0.0013378	-2.3091	-0.0011668	505.27475093783227	40.03	0.80571	40.03	39.695	40.501	0					41	28	2	0	0	0	0.34046	1	8533	8533		9.3474	0	1	196800	+		28049	15571	16212	16213	34614	34614					0.03533777651421133
LVQFERAF	8	Unmodified	_LVQFERAF_					0	0	0			REV__ENSG00000132429|ENST00000254765|POPDC3	REV__ENSG00000132429|ENST00000254765|POPDC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7923889160156	2	505.276909	1008.53927	0.49257	0.00024888	-0.46973	-0.00023734	0.022834	1.1538E-05	505.2764660132138	86.031	0.84625	86.022	85.758	86.604	-0.0090103					52	32	2	0	0	0	0.3366	1	22584	22584		18.135	0	1	141240	+		28050	15571	16212	16213	34615	34615					0.03533777651421133
LVQGRYPHIK	10	Unmodified	_LVQGRYPHIK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.87689208984375	3	404.240018	1209.69823	-0.21685	-8.766E-05	-0.60376	-0.00024406	-0.82061	-0.00033172	404.2397870393628	26.426	0.66439	26.426	26.009	26.673	0					54	22	3	0	0	0	0.31473	1	4376	4376		13.615	0	1	248380			28051	663	16213	16214	34616	34616					0.1017649127952609
LVQGRYPHIK	10	Unmodified	_LVQGRYPHIK_					0	0	0		ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	ENSG00000050405|ENST00000341247|LIMA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.87689208984375	3	404.240018	1209.69823	-0.027851	-1.1258E-05	-1.0016	-0.0004049	-1.0295	-0.00041616	404.2395854600431	26.459	0.56778	26.437	26.073	26.64	-0.022236					45	19	3	0	0	0	0.31289	1	4398	4398		16.566	8.1216	1	245250			28052	663	16213	16214	34617	34617					0.1017649127952609
LVQKDVSLT	9	Unmodified	_LVQKDVSLT_					0	0	0		nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7651062011719	2	501.795132	1001.57571	0.46068	0.00023117	-0.26397	-0.00013246	0.19671	9.871E-05	501.79471038750563	36.504	0.50803	36.504	36.307	36.815	0					29	17	2	0	0	0	0.2322	1	7404	7404		20.454	0	1	240350			28053	12623	16214	16215	34618	34618					0.07498609757453778
LVQKEKLK	8	Unmodified	_LVQKEKLK_					0	0	0		ENST00000531757.5_1_11:18354712-18357405:+|nuORF	ENST00000531757.5_1_11:18354712-18357405:+|nuORF	ENST00000531757.5_1_11:18354712-18357405:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.32373046875	2	493.32386	984.633166	0.3309	0.00016324	-0.2956	-0.00014583	0.035294	1.7411E-05	493.32363484134737	25.039	0.39416	25.039	24.872	25.267	0					20	13	2	0	0	0	0.41758	1	3950	3950		16.942	2.104	1	56725			28054	11629	16215	16216	34619	34619					0.14023496753702602
LVQKEKLK	8	Unmodified	_LVQKEKLK_					0	0	0		ENST00000531757.5_1_11:18354712-18357405:+|nuORF	ENST00000531757.5_1_11:18354712-18357405:+|nuORF	ENST00000531757.5_1_11:18354712-18357405:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.76715087890625	2	493.32386	984.633166	-0.064823	-3.1979E-05	0.16498	8.1389E-05	0.10016	4.9411E-05	493.32390992268614	25.101	0.40233	25.069	24.862	25.265	-0.031408					21	13	2	0	0	0	0.34367	1	3906	3906		4.3292	0.73274	1	59655			28055	11629	16215	16216	34620	34620					0.14023496753702602
LVQKTEESF	9	Unmodified	_LVQKTEESF_					0	0	0			REV__nc|ENSG00000196712|P21359-2|NF1	REV__nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7816162109375	2	540.782222	1079.54989	0.53387	0.00028871	-0.63062	-0.00034103	-0.096755	-5.2323E-05	540.782098883453	29.802	0.67252	29.815	29.5	30.173	0.012266					46	22	3	0	0	0	0.14076	1	5429	5429		32.305	1.0371	1	345060	+		28056	18681	16216	16217	34621	34621					0.013297155151803963
LVQKTEESF	9	Unmodified	_LVQKTEESF_					0	0	0			REV__nc|ENSG00000196712|P21359-2|NF1	REV__nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7821655273438	2	540.782222	1079.54989	0.292	0.00015791	-0.77215	-0.00041757	-0.48016	-0.00025966	540.7820700437957	29.803	0.50155	29.816	29.594	30.095	0.013475					36	16	3	0	0	0	0.088391	1	5422	5422		39.957	8.689	1	395390	+		28057	18681	16216	16217	34622	34622					0.013297155151803963
LVQLGQLQI	9	Unmodified	_LVQLGQLQI_					0	0	0			REV__nc|ENSG00000162670|Q76B58-2|BRINP3	REV__nc|ENSG00000162670|Q76B58-2|BRINP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2855224609375	2	506.313492	1010.61243	0.25997	0.00013162	0.71453	0.00036177	0.97449	0.0004934	506.3140339756438	52.038	0.5145	52.038	51.809	52.324	0					29	18	2	0	0	0	0.17611	1	12196	12196		34.102	5.6156	1	347060	+		28058	16998	16217	16218	34623	34623					0.1075490637402936
LVQLGQLQI	9	Unmodified	_LVQLGQLQI_					0	0	0			REV__nc|ENSG00000162670|Q76B58-2|BRINP3	REV__nc|ENSG00000162670|Q76B58-2|BRINP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2843017578125	2	506.313492	1010.61243	0.32356	0.00016382	1.1097	0.00056186	1.4333	0.00072568	506.31431009524425	51.97	0.4373	52.021	51.817	52.254	0.050575					21	15	2	0	0	0	0.11486	1	12157	12157		39.957	1.9833	1	345970	+		28059	16998	16217	16218	34624	34624					0.1075490637402936
LVQLGQLQI	9	Unmodified	_LVQLGQLQI_					0	0	0			REV__nc|ENSG00000162670|Q76B58-2|BRINP3	REV__nc|ENSG00000162670|Q76B58-2|BRINP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2856750488281	2	506.313492	1010.61243	0.092715	4.6943E-05	1.0828	0.00054825	1.1755	0.00059519	506.3142746467071	52.057	0.43007	52.056	51.902	52.332	-0.00080872					27	15	2	0	0	0	0.17611	1	12193	12193		26.884	5.137	1	272490	+		28060	16998	16217	16218	34625	34625					0.1075490637402936
LVQLRRLYW	9	Unmodified	_LVQLRRLYW_					0	0	0		ENSG00000175877|ENST00000320531|TMEM270	ENSG00000175877|ENST00000320531|TMEM270	ENSG00000175877|ENST00000320531|TMEM270	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.8743286132812	2	623.874582	1245.73461	-0.3504	-0.00021861	-0.24514	-0.00015294	-0.59555	-0.00037155	623.8742874689632	65.313	0.72876	65.402	65.11	65.839	0.088882					66	26	3	0	0	0	0.24581	2	16264	16264;16313		16.942	16.942	1	1390400			28061	6889	16218	16219	34626;34627	34626					0.12157368176281125
LVQNLPSSV	9	Unmodified	_LVQNLPSSV_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2939453125	2	478.7742	955.533846	0.81901	0.00039212	0.33919	0.0001624	1.1582	0.00055452	478.77413092016013	56.153	0.37735	56.153	55.992	56.37	0					20	13	2	0	0	0	0.21389	1	13496	13496		25.399	0	1	895830			28062	3321	16219	16220	34628	34628					0.0543005406894963
LVQNLPSSV	9	Unmodified	_LVQNLPSSV_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2938232421875	2	478.7742	955.533846	0.80206	0.00038401	0.49781	0.00023834	1.2999	0.00062235	478.773993933725	56.055	0.47081	56.126	55.958	56.429	0.070885					24	16	2	0	0	0	0.14076	1	13456	13456		32.305	0	1	720510			28063	3321	16219	16220	34629	34629					0.0543005406894963
LVQNLQARA	9	Unmodified	_LVQNLQARA_					0	0	0			REV__ENST00000510380.5_1_5:176936546-176936835:-|nuORF	REV__ENST00000510380.5_1_5:176936546-176936835:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.319091796875	2	506.79854	1011.58253	-0.009002	-4.5622E-06	-0.68596	-0.00034764	-0.69496	-0.0003522	506.7981618505107	28.285	0.33651	28.286	28.188	28.524	0.0004673					19	11	2	0	0	0	0.23783	1	4937	4937		18.135	0	1	139500	+		28064	21800	16220	16221	34630	34630					0.07719967428704422
LVQNNQLVSL	10	Unmodified	_LVQNNQLVSL_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3248291015625	2	564.324588	1126.63462	0.60898	0.00034366	-0.65615	-0.00037028	-0.047172	-2.662E-05	564.3242313936748	54.936	1.3054	54.936	54.602	55.907	0					148	47	4	0	0	0	0.017063	3	13081	13034;13081;13125		74.929	11.702	1	15822000			28065	531	16221	16222	34631;34632;34633	34632					0.0763708605179545
LVQNNQLVSL	10	Unmodified	_LVQNNQLVSL_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.324588	1126.63462	0.66728	0.00037656	-0.88992	-0.00050221	-0.22264	-0.00012564	564.3240895247554	54.858	1.2303	54.921	54.642	55.873	0.063202	-0.041052	-0.00013152	NaN	74.929	149	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17359000			28066	531	16221	16222							0.0763708605179545
LVQNNQLVSL	10	Unmodified	_LVQNNQLVSL_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	564.324588	1126.63462	0.57318	0.00032346	-0.72987	-0.00041188	-0.15668	-8.842E-05	564.3241684712502	55.048	1.2224	55.03	54.602	55.825	-0.018429	0.067458	4.9127E-05	NaN	74.929	144	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18769000			28067	531	16221	16222							0.0763708605179545
LVQPFPFTLP	10	Unmodified	_LVQPFPFTLP_					0	0	0			REV__ENST00000564768.1_1_16:30199479-30199542:+|nuORF	REV__ENST00000564768.1_1_16:30199479-30199542:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8135375976562	2	579.831517	1157.64848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.89	1	89.89	89.39	90.39	-0.00022125								0	0	0	0.35216	1	23793	23793		13.906	0.86358	1		+		28068	22347	16222	16223	34634	34634					0.07596363550896967
LVQPHHRLWWY	11	Unmodified	_LVQPHHRLWWY_					0	0	0			REV__ENST00000467388.1_1_2:216203501-216211697:+|nuORF	REV__ENST00000467388.1_1_2:216203501-216211697:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.8111572265625	3	512.273722	1533.79934	0.19605	0.00010043	1.411	0.00072283	1.6071	0.00082326	512.6080718951365	26.597	0.47764	26.559	26.402	26.879	-0.03867					34	16	4	0	0	0	0.33348	1	4457	4457		0.40827	0.31342	1	103350	+		28069	15921	16223	16224	34635	34635					0.053789429822700185
LVQRFEEL	8	Unmodified	_LVQRFEEL_					0	0	0		nc|ENSG00000216937|Q96M83-4|CCDC7;nc|ENSG00000216937|Q96M83-3|CCDC7;nc|ENSG00000216937|Q96M83-5|CCDC7;CCDC7|p.R194Ifs*11|1|0.11|ENSG00000216937|chr10:32726823-32726824|-/TCTCTATATTT|frameshift_variant;ENSG00000216937|ENST00000639629|CCDC7;nc|ENSG00000216937|Q96M83-2|CCDC7	nc|ENSG00000216937|Q96M83-4|CCDC7	nc|ENSG00000216937|Q96M83-4|CCDC7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7354736328125	2	517.287474	1032.5604	0.49694	0.00025706	-0.34385	-0.00017787	0.15309	7.919E-05	517.2874184140215	50.178	0.99733	50.178	49.626	50.623	0					61	36	2	0	0	0	0.32435	1	11624	11624		23.148	1.4018	1	273600			28070	97	16224	16225	34636	34636					0.04541742960282136
LVQRLQGK	8	Unmodified	_LVQRLQGK_					0	0	0		ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2200012207031	2	471.298176	940.581799	0.020891	9.8459E-06	-0.5483	-0.00025841	-0.52741	-0.00024857	471.2978348604236	19.257	0.486	19.141	18.947	19.433	-0.11592					24	16	2	0	0	0	0.3366	1	2189	2189		18.135	0	1	67085			28071	734	16225	16226	34637	34637					0.10913172779669367
LVQRLQRY	8	Unmodified	_LVQRLQRY_					0	0	0		nc|ENSG00000102572|Q9Y6E0|STK24;ENSG00000102572|ENST00000539966|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	nc|ENSG00000102572|Q9Y6E0|STK24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2604370117188	2	538.322183	1074.62981	0.55597	0.00029929	2.0748	0.0011169	2.6307	0.0014162	538.3229116685277	72.135	0.35706	72.135	71.963	72.32	0					26	12	3	0	0	0	0.34185	1	18409	18409		5.7604	0	1	205140			28072	1771	16226	16227	34638	34638					0.09548246699705487
LVQRMYARIES	11	Unmodified	_LVQRMYARIES_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.90521240234375	3	455.915095	1364.72345	0.11209	5.1104E-05	-0.53375	-0.00024334	-0.42166	-0.00019224	455.9147718952225	38.804	0.74165	38.897	38.485	39.226	0.09267					57	26	3	0	0	0	0.46392	1	8201	8201		2.8433	0.21205	1	589740	+		28073	13757	16227	16228	34639	34639					0.05568178019825609
LVQRNVNIFK	10	Unmodified	_LVQRNVNIFK_					0	0	0		ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-2|LDHA	ENSG00000134333|ENST00000422447|LDHA	ENSG00000134333|ENST00000422447|LDHA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.5592041015625	3	410.915423	1229.72444	0.25855	0.00010624	0.023437	9.6305E-06	0.28199	0.00011587	410.91536114577696	35.874	0.52046	35.956	35.739	36.259	0.082355					29	18	2	0	0	0	0.30504	1	7220	7220		16.566	0.82726	1	230380			28074	3775	16228	16229	34640	34640					0.11876760451013979
LVQRNVNIFK	10	Unmodified	_LVQRNVNIFK_					0	0	0		ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-2|LDHA	ENSG00000134333|ENST00000422447|LDHA	ENSG00000134333|ENST00000422447|LDHA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5592346191406	3	410.915423	1229.72444	0.24292	9.9819E-05	0.14366	5.9032E-05	0.38658	0.00015885	410.9153633230661	35.864	0.4661	35.951	35.73	36.196	0.08625					27	16	2	0	0	0	0.31289	1	7209	7209		16.566	1.0274	1	356690			28075	3775	16228	16229	34641	34641					0.11876760451013979
LVQRNVNVF	9	Unmodified	_LVQRNVNVF_					0	0	0		ENSG00000111716|ENST00000350669|LDHB;ENST00000470280.1_1_12:21796836-21807485:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.814453125	2	544.81419	1087.61383	0.2967	0.00016165	0.39346	0.00021436	0.69016	0.00037601	544.8140706826786	27.423	0.57969	27.423	27.063	27.643	0					30	19	2	0	0	0	0.27532	1	4639	4639		12.532	0.89125	1	242390			28076	2384	16229	16230	34642	34642					0.07352540462784418
LVQTVARQT	9	Unmodified	_LVQTVARQT_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2985534667969	2	508.298373	1014.58219	0.26313	0.00013375	-0.42975	-0.00021844	-0.16662	-8.4692E-05	508.2982135477941	17.377	0.60081	17.316	17.103	17.704	-0.060431					52	20	3	0	0	0	0.33508	1	1677	1677		3.5965	0	1	88257			28077	1896	16230	16231	34643	34643					0.07548547708836395
LVQVAYRIV	9	Unmodified	_LVQVAYRIV_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2862548828125	2	530.829309	1059.64407	0.1179	6.2582E-05	-1.1752	-0.00062381	-1.0573	-0.00056123	530.8282258060881	39.037	0.7528	39.037	38.649	39.402	0					46	26	2	0	0	0	0.2451	1	8227	8227		15.847	1.0089	1	205930	+		28078	13679	16231	16232	34644	34644					0.1166289912796401
LVRDAKQRL	9	Unmodified	_LVRDAKQRL_					0	0	0		ENST00000589441.5_1_19:2037744-2041200:-|nuORF;ENST00000587416.5_1_19:2040939-2042512:-|nuORF;nc|ENSG00000079277|Q9BUB5-3|MKNK1;ENSG00000079277|ENST00000371945|MKNK1;nc|ENSG00000099875|Q9HBH9-2|MKNK2;nc|ENSG00000079277|Q9BUB5-2|MKNK1;nc|ENSG00000079277|Q9BUB5|MKNK1;ENSG00000099875|ENST00000250896|MKNK2	ENST00000589441.5_1_19:2037744-2041200:-|nuORF	ENST00000589441.5_1_19:2037744-2041200:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.8411254882812	2	549.840739	1097.66693	0.27192	0.00014952	-0.075795	-4.1675E-05	0.19613	0.00010784	549.8406622902721	17.306	0.47597	17.188	16.965	17.441	-0.11739					26	16	2	0	0	0	0.31763	1	1584	1584		6.2058	0	1	71760			28079	1128	16232	16233	34645	34645					0.1219991824546014
LVRDAKQRL	9	Unmodified	_LVRDAKQRL_					0	0	0		ENST00000589441.5_1_19:2037744-2041200:-|nuORF;ENST00000587416.5_1_19:2040939-2042512:-|nuORF;nc|ENSG00000079277|Q9BUB5-3|MKNK1;ENSG00000079277|ENST00000371945|MKNK1;nc|ENSG00000099875|Q9HBH9-2|MKNK2;nc|ENSG00000079277|Q9BUB5-2|MKNK1;nc|ENSG00000079277|Q9BUB5|MKNK1;ENSG00000099875|ENST00000250896|MKNK2	ENST00000589441.5_1_19:2037744-2041200:-|nuORF	ENST00000589441.5_1_19:2037744-2041200:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	549.840739	1097.66693	0.37653	0.00020703	-0.31978	-0.00017583	0.056751	3.1204E-05	549.8406176644495	17.094	0.42249	17.094	16.895	17.318	0	-0.050002	-3.4851E-05	NaN	6.2058	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79965			28080	1128	16232	16233							0.1219991824546014
LVRDAKQRL	9	Unmodified	_LVRDAKQRL_					0	0	0		ENST00000589441.5_1_19:2037744-2041200:-|nuORF;ENST00000587416.5_1_19:2040939-2042512:-|nuORF;nc|ENSG00000079277|Q9BUB5-3|MKNK1;ENSG00000079277|ENST00000371945|MKNK1;nc|ENSG00000099875|Q9HBH9-2|MKNK2;nc|ENSG00000079277|Q9BUB5-2|MKNK1;nc|ENSG00000079277|Q9BUB5|MKNK1;ENSG00000099875|ENST00000250896|MKNK2	ENST00000589441.5_1_19:2037744-2041200:-|nuORF	ENST00000589441.5_1_19:2037744-2041200:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.840739	1097.66693	0.49745	0.00027352	-0.43828	-0.00024099	0.059165	3.2531E-05	549.8405171464082	17.21	0.44258	17.15	16.971	17.414	-0.060429	0.0057258	-0.00016516	NaN	6.2058	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65717			28081	1128	16232	16233							0.1219991824546014
LVRDILYVFQ	10	Unmodified	_LVRDILYVFQ_					0	0	0		nc|ENSG00000126216|Q96CW5-3|TUBGCP3;TUBGCP3|p.Q531Rfs*32|1|0.25|ENSG00000126216|chr13:112522475-112522475|A/-|frameshift_variant;nc|ENSG00000126216|Q96CW5-2|TUBGCP3;ENSG00000126216|ENST00000261965|TUBGCP3	nc|ENSG00000126216|Q96CW5-3|TUBGCP3	nc|ENSG00000126216|Q96CW5-3|TUBGCP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3687744140625	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.482	1	93.482	92.982	93.982	-0.00051117								0	0	0	0.37044	1	24896	24896		6.2058	0.9089	1				28082	3260	16233	16234	34646	34646					0.0961882249964674
LVRDVVSSL	9	Unmodified	_LVRDVVSSL_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2964172363281	2	494.295299	986.576045	0.65448	0.00032351	1.1369	0.00056197	1.7914	0.00088548	494.29586838740573	47.503	0.46956	47.503	47.302	47.771	0					29	16	2	0	0	0	0.04299	1	10805	10805		55.503	13.663	1	517640			28083	3517	16234	16235	34647	34647					0.08222029477337855
LVRDVVSSL	9	Unmodified	_LVRDVVSSL_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.296630859375	2	494.295299	986.576045	0.53456	0.00026423	0.97747	0.00048316	1.512	0.00074739	494.29571558754026	47.494	0.4509	47.542	47.321	47.772	0.04752					28	16	2	0	0	0	0.089483	1	10771	10771		51.415	13.24	1	524320			28084	3517	16234	16235	34648	34648					0.08222029477337855
LVRDYMRNVSI	11	Unmodified	_LVRDYMRNVSI_					0	0	0			REV__LTR5B_dup128|chr5:157034004-157034984:-|1.3856941857337757|0.0738699138464268|4.23|526.0|53|3|anti-sense	REV__LTR5B_dup128|chr5:157034004-157034984:-|1.3856941857337757|0.0738699138464268|4.23|526.0|53|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.9148254394531	3	455.915095	1364.72345	0.11209	5.1104E-05	-0.53375	-0.00024334	-0.42166	-0.00019224	455.9147718952225	38.804	0.74165	38.897	38.485	39.226	0.09267					57	26	3	0	0	0	0.35571	1	8122	8122		17.049	7.2843	1	589740	+		28085	22845	16235	16236	34649	34649					0.05568178019802872
LVRDYMRNVSI	11	Unmodified	_LVRDYMRNVSI_					0	0	0			REV__LTR5B_dup128|chr5:157034004-157034984:-|1.3856941857337757|0.0738699138464268|4.23|526.0|53|3|anti-sense	REV__LTR5B_dup128|chr5:157034004-157034984:-|1.3856941857337757|0.0738699138464268|4.23|526.0|53|3|anti-sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	455.915095	1364.72345	-0.26285	-0.00011984	0.1873	8.5395E-05	-0.075542	-3.4441E-05	455.9150952332581	38.965	0.67088	38.965	38.571	39.242	0	0.017001	0.00080851	NaN	17.049	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449380	+		28086	22845	16235	16236							0.05568178019802872
LVRDYMRNVSI	11	Unmodified	_LVRDYMRNVSI_					0	0	0			REV__LTR5B_dup128|chr5:157034004-157034984:-|1.3856941857337757|0.0738699138464268|4.23|526.0|53|3|anti-sense	REV__LTR5B_dup128|chr5:157034004-157034984:-|1.3856941857337757|0.0738699138464268|4.23|526.0|53|3|anti-sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	455.915095	1364.72345	0.32652	0.00014887	-0.76157	-0.00034721	-0.43504	-0.00019834	455.914711231009	38.882	0.76952	38.982	38.467	39.236	0.099407	0.034129	-0.0004893	NaN	17.049	55	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	584570	+		28087	22845	16235	16236							0.05568178019802872
LVREIRKH	8	Unmodified	_LVREIRKH_					0	0	0		ENSG00000133703|ENST00000311936|KRAS;ENST00000256078.8_1_12:25362731-25368373:-|nuORF	ENSG00000133703|ENST00000311936|KRAS	ENSG00000133703|ENST00000311936|KRAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8302001953125	2	525.830175	1049.6458	0.26538	0.00013955	-0.28353	-0.00014909	-0.018146	-9.5415E-06	525.8300342945657	17.223	0.55697	17.106	16.884	17.441	-0.11739					44	19	3	0	0	0	0.46022	1	1614	1614		2.3027	0	1	145710			28088	3724	16236	16237	34650	34650					0.12295952936597132
LVRELHPR	8	Unmodified	_LVRELHPR_					0	0	0			REV__nc|ENSG00000143149|P49189-2|ALDH9A1	REV__nc|ENSG00000143149|P49189-2|ALDH9A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7876892089844	2	510.309075	1018.6036	0.27883	0.00014229	-0.90449	-0.00046157	-0.62567	-0.00031928	510.3084753894916	23.541	0.42577	23.502	23.255	23.681	-0.038927					18	14	2	0	0	0	0.34337	1	3492	3492		5.2307	0	1	29505	+		28089	16152	16237	16238	34651	34651					0.09503977528208907
LVRESEWRKF	10	Unmodified	_LVRESEWRKF_					0	0	0			REV__ENSG00000185009|ENST00000355264|AP3M1	REV__ENSG00000185009|ENST00000355264|AP3M1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2261962890625	3	450.582333	1348.72517	0.22423	0.00010104	-0.5905	-0.00026607	-0.36627	-0.00016503	450.5820684789893	37.465	0.53545	37.558	37.331	37.866	0.093018					24	19	2	0	0	0	0.32068	1	7744	7744		3.5871	3.5871	1	173830	+		28090	18350	16238	16239	34652	34652					0.06475555100041674
LVRFCKVE	8	Unmodified	_LVRFCKVE_					0	0	0		ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF;RSAD2|p.R148W|1|0.25|ENSG00000134321|chr2:6883466-6883466|C/T|missense_variant	ENSG00000134321|ENST00000382040|RSAD2	ENSG00000134321|ENST00000382040|RSAD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7637023925781	2	497.281137	992.547722	1.0342	0.00051427	4.078	0.0020279	5.1122	0.0025422	497.28315020554805	50.54	0.28191	50.585	50.372	50.654	0.044891					12	9	2	0	0	0	0.29855	1	11747	11747		32.117	0	1	121580			28091	3774	16239	16240	34653	34653					0.051150082963886234
LVRFVNLIS	9	Unmodified	_LVRFVNLIS_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2864990234375	2	530.829309	1059.64407	0.65019	0.00034514	-1.6894	-0.0008968	-1.0392	-0.00055166	530.8284839122998	38.931	0.61198	39.03	38.707	39.319	0.099403					45	21	3	0	0	0	0.24311	1	8184	8184		16.942	1.0951	1	219140			28092	288	16240	16241	34654	34654					0.11662899127986748
LVRFYQRFPEE	11	Unmodified	_LVRFYQRFPEE_					0	0	0		nc|ENSG00000157823|P59780-2|AP3S2;ENST00000560184.5_1_15:90408823-90437190:-|nuORF;ENSG00000157823|ENST00000336418|AP3S2	nc|ENSG00000157823|P59780-2|AP3S2	nc|ENSG00000157823|P59780-2|AP3S2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7662353515625	3	495.261259	1482.76195	0.45868	0.00022717	0.67211	0.00033287	1.1308	0.00056004	495.2614243118034	42.184	0.48729	42.275	42.067	42.554	0.091362					30	16	3	0	0	0	0.33326	1	9102	9102		0.50596	0	1	256340			28093	5327	16241	16242	34655	34655					0.039878069259884796
LVRHGKQL	8	Unmodified	_LVRHGKQL_					0	0	0			REV__ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	REV__ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.79888916015625	2	475.798343	949.582134	0.45453	0.00021626	0.3171	0.00015088	0.77163	0.00036714	475.7984309697827	41.903	0.69011	41.999	41.814	42.505	0.096626					37	23	2	0	0	0	0.4397	1	9065	9065		9.3474	0	1	1412800	+		28094	16360	16242	16243	34656	34656					0.10532592499521343
LVRHNPQGRKL	11	Unmodified	_LVRHNPQGRKL_					0	0	0			REV__ENSG00000134864|ENST00000683975|GGACT	REV__ENSG00000134864|ENST00000683975|GGACT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.54620361328125	3	439.933588	1316.77894	0.01164	5.1209E-06	-0.13905	-6.1171E-05	-0.12741	-5.605E-05	439.9335316128605	26.703	0.6841	26.703	26.379	27.063	0					32	23	2	0	0	0	0.33296	1	4456	4456		2.6312	2.6312	1	49625	+		28095	15704	16243	16244	34657	34657					0.1332177232243339
LVRHPLLFKIK	11	Unmodified	_LVRHPLLFKIK_					0	0	0			REV__ENST00000413663.1_1_3:43526466-43526670:-|nuORF	REV__ENST00000413663.1_1_3:43526466-43526670:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.9148254394531	3	455.30273	1362.88636	0.12273	5.5878E-05	-1.936	-0.00088146	-1.8133	-0.00082559	455.30187683494216	38.853	0.29902	38.946	38.704	39.003	0.09267					13	10	2	0	0	0	0.33287	1	8122	8122		1.3296	0.87513	1	235550	+		28096	20794	16244	16245	34658	34658					0.21943349203979778
LVRLCNEGARK	11	Unmodified	_LVRLCNEGARK_					0	0	0		nc|ENSG00000114790|Q96DR7-4|ARHGEF26;ENSG00000114790|ENST00000465093|ARHGEF26	nc|ENSG00000114790|Q96DR7-4|ARHGEF26	nc|ENSG00000114790|Q96DR7-4|ARHGEF26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.85595703125	2	629.856064	1257.69757	0.36549	0.00023021	-0.39073	-0.0002461	-0.025233	-1.5893E-05	629.8557326948018	58.097	0.8339	58.097	57.634	58.468	0					95	29	4	0	0	0	0.26921	1	14058	14058		24.991	3.454	1	2396500			28097	2582	16245	16246	34659	34659					0.07903328568181678
LVRLCNEGARK	11	Unmodified	_LVRLCNEGARK_					0	0	0		nc|ENSG00000114790|Q96DR7-4|ARHGEF26;ENSG00000114790|ENST00000465093|ARHGEF26	nc|ENSG00000114790|Q96DR7-4|ARHGEF26	nc|ENSG00000114790|Q96DR7-4|ARHGEF26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.8557739257812	2	629.856064	1257.69757	0.23133	0.0001457	-0.34108	-0.00021483	-0.10975	-6.9126E-05	629.8557728466915	57.884	1.0363	57.97	57.544	58.581	0.085617					105	37	4	0	0	0	0.26921	1	13995	13995		24.991	3.454	1	2768900			28098	2582	16245	16246	34660	34660					0.07903328568181678
LVRLCNEGARK	11	Unmodified	_LVRLCNEGARK_					0	0	0		nc|ENSG00000114790|Q96DR7-4|ARHGEF26;ENSG00000114790|ENST00000465093|ARHGEF26	nc|ENSG00000114790|Q96DR7-4|ARHGEF26	nc|ENSG00000114790|Q96DR7-4|ARHGEF26	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	629.856064	1257.69757	0.36549	0.00023021	-0.39073	-0.0002461	-0.025233	-1.5893E-05	629.8557326948018	58.097	0.8339	58.097	57.634	58.468	0	0.042415	2.7388E-05	NaN	24.991	95	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2396500			28099	2582	16245	16246							0.07903328568181678
LVRLCNEGARK	11	Unmodified	_LVRLCNEGARK_					0	0	0		nc|ENSG00000114790|Q96DR7-4|ARHGEF26;ENSG00000114790|ENST00000465093|ARHGEF26	nc|ENSG00000114790|Q96DR7-4|ARHGEF26	nc|ENSG00000114790|Q96DR7-4|ARHGEF26	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	629.856064	1257.69757	0.23133	0.0001457	-0.34108	-0.00021483	-0.10975	-6.9126E-05	629.8557728466915	57.884	1.0363	57.97	57.544	58.581	0.085617	-0.084877	8.9929E-05	NaN	24.991	105	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2768900			28100	2582	16245	16246							0.07903328568181678
LVRLCNEGARK	11	Unmodified	_LVRLCNEGARK_					0	0	0		nc|ENSG00000114790|Q96DR7-4|ARHGEF26;ENSG00000114790|ENST00000465093|ARHGEF26	nc|ENSG00000114790|Q96DR7-4|ARHGEF26	nc|ENSG00000114790|Q96DR7-4|ARHGEF26	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	629.856064	1257.69757	0.49095	0.00030923	-0.5297	-0.00033364	-0.038748	-2.4406E-05	629.8556353889074	58.115	0.94916	58.097	57.631	58.58	-0.0172	0.042462	-0.00014768	NaN	24.991	106	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2679200			28101	2582	16245	16246							0.07903328568181678
LVRLLPET	8	Unmodified	_LVRLLPET_					0	0	0		ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1;ENST00000479501.5_1_20:61943331-61950713:+|nuORF	ENSG00000101203|ENST00000358894|COL20A1	ENSG00000101203|ENST00000358894|COL20A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.28436279296875	2	470.794935	939.575317	0.10185	4.7952E-05	0.0063118	2.9716E-06	0.10817	5.0924E-05	470.79488330141567	23.983	0.45103	23.911	23.7	24.151	-0.072559					26	14	2	0	0	0	0.34319	1	3666	3666		5.7604	2.4791	1	108990			28102	1675	16246	16247	34661	34661					0.10311234828270699
LVRLLRDQAA	10	Unmodified	_LVRLLRDQAA_					0	0	0		ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.8538208007812	2	577.853847	1153.69314	-0.094009	-5.4324E-05	0.12817	7.4063E-05	0.03416	1.974E-05	577.8538123047641	13.032	0.24818	13.032	12.925	13.174	0					22	8	3	0	0	0	0.39227	1	318	318		4.897	0.36815	1	116730			28103	1934	16247	16248	34662	34662					0.12244187416945351
LVRLTWQLM	9	Unmodified	_LVRLTWQLM_					0	0	0			REV__ENST00000493076.5_1_22:35806581-35817581:+|nuORF	REV__ENST00000493076.5_1_22:35806581-35817581:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3365478515625	2	580.336444	1158.65834	0.24705	0.00014337	1.5253	0.00088519	1.7724	0.0010286	580.3369735597896	91.658	0.90181	91.658	91.482	92.383	0					95	65	2	0	0	0	0.33719	1	24429	24429		3.2813	0	1	232230	+		28104	21631	16248	16249	34663	34663					0.0853522828460882
LVRLTWQLM	9	Unmodified	_LVRLTWQLM_					0	0	0			REV__ENST00000493076.5_1_22:35806581-35817581:+|nuORF	REV__ENST00000493076.5_1_22:35806581-35817581:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.333984375	2	580.336444	1158.65834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.54	1	61.54	61.04	62.04	0								0	0	0	0.20639	1	15127	15127		20.454	4.6064	1		+		28105	21631	16248	16249	34664	34664					0.0853522828460882
LVRNAHKI	8	Unmodified	_LVRNAHKI_					0	0	0		ENST00000373119.8_1_X:86773203-86773281:+|nuORF	ENST00000373119.8_1_X:86773203-86773281:+|nuORF	ENST00000373119.8_1_X:86773203-86773281:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.7984924316406	2	475.798343	949.582134	-0.077129	-3.6698E-05	0.57026	0.00027133	0.49314	0.00023463	475.7985020335818	42.17	0.66324	42.17	41.932	42.595	0					40	23	2	0	0	0	0.41097	1	9210	9210		18.135	4.6271	1	1048900			28106	9862	16249	16250	34665	34665					0.10532592499498605
LVRPVFGEL	9	Unmodified	_LVRPVFGEL_					0	0	0		nc|ENSG00000115694|O00506-3|STK25;nc|ENSG00000115694|O00506-2|STK25;ENSG00000115694|ENST00000316586|STK25;ENST00000487962.5_1_2:242435079-242438851:-|nuORF	nc|ENSG00000115694|O00506-3|STK25	nc|ENSG00000115694|O00506-3|STK25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.3084716796875	2	515.30821	1028.60187	0.42576	0.0002194	1.0443	0.00053811	1.47	0.00075751	515.3086373220069	58.422	0.85398	58.422	57.828	58.682	0					56	29	3	0	0	0	0.023967	1	14167	14167		62.573	26.528	1	512970			28107	2671	16250	16251	34666	34666					0.08870923719609891
LVRPVFGEL	9	Unmodified	_LVRPVFGEL_					0	0	0		nc|ENSG00000115694|O00506-3|STK25;nc|ENSG00000115694|O00506-2|STK25;ENSG00000115694|ENST00000316586|STK25;ENST00000487962.5_1_2:242435079-242438851:-|nuORF	nc|ENSG00000115694|O00506-3|STK25	nc|ENSG00000115694|O00506-3|STK25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3090209960938	2	515.30821	1028.60187	0.28564	0.00014719	1.2009	0.00061881	1.4865	0.000766	515.3087477289711	58.232	0.71971	58.317	57.92	58.639	0.085621					56	25	3	0	0	0	0.023967	1	14115	14115		62.573	26.528	1	529730			28108	2671	16250	16251	34667	34667					0.08870923719609891
LVRPVFGEL	9	Unmodified	_LVRPVFGEL_					0	0	0		nc|ENSG00000115694|O00506-3|STK25;nc|ENSG00000115694|O00506-2|STK25;ENSG00000115694|ENST00000316586|STK25;ENST00000487962.5_1_2:242435079-242438851:-|nuORF	nc|ENSG00000115694|O00506-3|STK25	nc|ENSG00000115694|O00506-3|STK25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.3081665039062	2	515.30821	1028.60187	0.55385	0.0002854	1.2138	0.00062546	1.7676	0.00091087	515.3088581842684	58.423	1.1797	58.409	57.851	59.031	-0.014267					62	42	3	0	0	0	0.023967	1	14178	14178		62.573	22.615	1	485190			28109	2671	16250	16251	34668	34668					0.08870923719609891
LVRQTITK	8	Unmodified	_LVRQTITK_					0	0	0			REV__nc|ENSG00000204176|Q9BQS2-4|SYT15	REV__nc|ENSG00000204176|Q9BQS2-4|SYT15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.8054504394531	2	479.805834	957.597115	-0.02838	-1.3617E-05	-0.51139	-0.00024537	-0.53977	-0.00025899	479.80551382586424	12.293	0.17281	12.196	12.122	12.295	-0.096607					12	5	3	0	0	0	0.46155	1	96	96		1.8442	0	1	102080	+		28110	18922	16251	16252	34669	34669					0.1166203957683365
LVRRPLQL	8	Unmodified	_LVRRPLQL_					0	0	0		ENSG00000232859|ENST00000379102|LYRM9	ENSG00000232859|ENST00000379102|LYRM9	ENSG00000232859|ENST00000379102|LYRM9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.787841796875	2	497.829643	993.644734	0.80084	0.00039868	-1.0149	-0.00050526	-0.21409	-0.00010658	497.82908059596275	36.624	0.38319	36.717	36.567	36.951	0.093018					15	13	2	0	0	0	0.34319	1	7425	7425		0.69038	0	1	76032			28111	8479	16252	16253	34670	34670					0.14765738567689368
LVRRREPWKKK	11	Unmodified	_LVRRREPWKKK_					0	0	0			REV__ENST00000462927.5_1_22:37699411-37707619:+|nuORF	REV__ENST00000462927.5_1_22:37699411-37707619:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.9820251464844	3	499.315921	1494.92593	0.18231	9.1028E-05	0.60872	0.00030394	0.79102	0.00039497	499.3162861255466	98.081	0.30354	98.143	98.032	98.335	0.061523					41	35	2	0	0	0	0.33351	1	26248	26248		0.094841	0	1	198880	+		28112	21241	16253	16254	34671	34671					0.1982686920737251
LVRRVPVSL	9	Unmodified	_LVRRVPVSL_					0	0	0			REV__ENSG00000103355|ENST00000682474|PRSS33	REV__ENSG00000103355|ENST00000682474|PRSS33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2761840820312	2	519.842751	1037.67095	0.43224	0.00022469	-0.0353	-1.835E-05	0.39694	0.00020634	519.8422451025955	81.938	0.15736	81.938	81.894	82.052	0					8	5	2	0	0	0	0.25706	1	21370	21370		0.35063	0	1	40403	+		28113	14369	16254	16255	34672	34672					0.15362007739167893
LVRSPAILV	9	Unmodified	_LVRSPAILV_					0	0	0			REV__ENSG00000137414|ENST00000259963|FAM8A1	REV__ENSG00000137414|ENST00000259963|FAM8A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.3189392089844	2	484.318577	966.622602	0.21497	0.00010412	0.50178	0.00024302	0.71675	0.00034714	484.3187312574701	62.147	0.74397	62.147	61.836	62.58	0					59	27	3	0	0	0	0.23007	1	15344	15344		19.257	1.1106	1	651780	+		28114	15859	16255	16256	34673	34673					0.13795514099263073
LVRSPAILV	9	Unmodified	_LVRSPAILV_					0	0	0			REV__ENSG00000137414|ENST00000259963|FAM8A1	REV__ENSG00000137414|ENST00000259963|FAM8A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.3187255859375	2	484.318577	966.622602	0.017473	8.4624E-06	0.70539	0.00034163	0.72286	0.00035009	484.3188493449213	61.998	0.62964	62.095	61.867	62.497	0.096989					54	22	3	0	0	0	0.20626	1	15271	15271		22.736	2.3217	1	773370	+		28115	15859	16255	16256	34674	34674					0.13795514099263073
LVRVKHCLLF	10	Unmodified	_LVRVKHCLLF_					0	0	0			REV__ENST00000487582.1_2_12:56226726-56226987:+|nuORF	REV__ENST00000487582.1_2_12:56226726-56226987:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.9049072265625	3	409.917999	1226.73217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.722	1	36.722	36.222	37.222	0								0	0	0	0.37523	1	7490	7490		4.1895	0	1		+		28116	21564	16256	16257	34675	34675					0.12787196446947746
LVRVMLLF	8	Unmodified	_LVRVMLLF_					0	0	0			REV__ENST00000260643.6_1_2:27357356-27357503:-|nuORF	REV__ENST00000260643.6_1_2:27357356-27357503:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.8030700683594	2	495.812073	989.609594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.316	1	63.307	62.807	63.807	-0.0085526								0	0	0	0.3683	1	15662	15662		6.3541	0	1		+		28117	19582	16257	16258	34676	34676					0.11437359715546336
LVRYREVFEVF	11	Unmodified	_LVRYREVFEVF_					0	0	0			REV__nc|ENSG00000137474|Q13402-3|MYO7A	REV__nc|ENSG00000137474|Q13402-3|MYO7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.3051452636719	3	486.269755	1455.78744	0.40396	0.00019643	-0.47699	-0.00023195	-0.073039	-3.5517E-05	486.2694278678786	66.354	0.27867	66.354	66.266	66.545	0					15	9	2	0	0	0	0.33169	1	16584	16584		6.2344	1.5184	1	82906	+		28118	15861	16258	16259	34677	34677					0.07777281448375106
LVSAHGEKPTK	11	Unmodified	_LVSAHGEKPTK_					0	0	0		ENSG00000196131|ENST00000341702|VN1R2	ENSG00000196131|ENST00000341702|VN1R2	ENSG00000196131|ENST00000341702|VN1R2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.8300170898438	2	583.830037	1165.64552	0.055098	3.2168E-05	-0.67318	-0.00039303	-0.61809	-0.00036086	583.8301896163525	106.73	0.1424	106.72	106.64	106.79	-0.0060425					24	19	2	0	0	0	0.44828	1	28210	28210		4.897	0.95262	1	1240500			28119	7824	16259	16260	34678	34678					0.06932488426082273
LVSAKKDRQ	9	Unmodified	_LVSAKKDRQ_					0	0	0			REV__nc|ENSG00000160953|Q2TAK8-2|PWWP3A	REV__nc|ENSG00000160953|Q2TAK8-2|PWWP3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8118286132812	2	522.811648	1043.60874	0.65834	0.00034419	0.60079	0.0003141	1.2591	0.00065828	522.8114964029954	86.243	1.2347	86.243	85.791	87.025	0					144	47	4	0	0	0	0.29176	1	22700	22700		10.074	0.6908	1	1924700	+		28120	16926	16260	16261	34679	34679					0.08868236600164892
LVSAPHIHL	9	Unmodified	_LVSAPHIHL_					0	0	0			REV__ENST00000493450.1_1_20:37659368-37662889:+|nuORF	REV__ENST00000493450.1_1_20:37659368-37662889:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.27716064453125	2	493.792727	985.5709	0.3759	0.00018562	2.3453	0.0011581	2.7212	0.0013437	493.79419568000867	23.473	0.34163	23.434	23.339	23.681	-0.038927					18	11	2	0	0	0	0.21303	1	3493	3493		21.747	8.7042	1	35413	+		28121	21638	16261	16262	34680	34680					0.07753770405372507
LVSARAITTEV	11	Unmodified	_LVSARAITTEV_					0	0	0			REV__nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	REV__nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3375244140625	2	580.337695	1158.66084	0.45617	0.00026473	-1.2639	-0.00073347	-0.80769	-0.00046873	580.3365467750687	91.675	0.73972	91.675	91.465	92.205	0.00046539					69	47	2	0	0	0	0.44828	1	24333	24333		4.897	0.141	1	207040	+		28122	13643	16262	16263	34681	34681					0.08785355223267288
LVSARKSR	8	Unmodified	_LVSARKSR_					0	0	0			REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3	REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.78802490234375	2	458.787976	915.561398	0.26526	0.0001217	-0.26386	-0.00012106	0.0013996	6.4213E-07	458.7878395448706	82.791	1.7459	82.791	82.287	84.033	0					234	67	5	0	0	0	0.43302	3	21576	21576;21668;21716		11.64	3.047	1	15662000	+		28123	18247	16263	16264	34682;34683;34684	34682					0.10024002119848774
LVSARKSR	8	Unmodified	_LVSARKSR_					0	0	0			REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3	REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.78802490234375	2	458.787976	915.561398	0.22068	0.00010125	-0.17923	-8.2229E-05	0.041454	1.9019E-05	458.7878887504455	82.75	1.58	82.823	82.314	83.894	0.073097					251	62	6	0	0	0	0.43302	4	21537	21537;21581;21628;21676		11.64	3.047	1	13279000	+		28124	18247	16263	16264	34685;34686;34687;34688	34685					0.10024002119848774
LVSARKSR	8	Unmodified	_LVSARKSR_					0	0	0			REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3	REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7880554199219	2	458.787976	915.561398	0.31638	0.00014515	-0.2765	-0.00012686	0.039877	1.8295E-05	458.78785949589906	82.889	1.6537	82.869	82.278	83.931	-0.020576					267	68	6	0	0	0	0.43302	3	21604	21604;21648;21691		11.64	3.047	1	16732000	+		28125	18247	16263	16264	34689;34690;34691	34689					0.10024002119848774
LVSASRDKTL	10	Unmodified	_LVSASRDKTL_					0	0	0		nc|ENSG00000109046|Q9Y6I7-3|WSB1;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-3|WSB1	nc|ENSG00000109046|Q9Y6I7-3|WSB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3169555664062	2	545.316763	1088.61897	0.7334	0.00039994	-0.24947	-0.00013604	0.48393	0.0002639	545.3164857153095	83.293	1.1068	83.293	83.03	84.137	0					120	43	4	0	0	0	0.37751	1	21854	21854		7.609	0	1	1823700			28126	2228	16264	16265	34692	34692					0.07820799534761136
LVSASRDKTL	10	Unmodified	_LVSASRDKTL_					0	0	0		nc|ENSG00000109046|Q9Y6I7-3|WSB1;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-3|WSB1	nc|ENSG00000109046|Q9Y6I7-3|WSB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7926025390625	2	545.316763	1088.61897	0.69209	0.00037741	-0.3778	-0.00020602	0.31429	0.00017139	545.3164280298441	84.711	0.57027	84.711	84.555	85.125	0					35	21	2	0	0	0	0.31642	1	22203	22203		7.1017	0	1	225700			28127	2228	16264	16265	34693	34693					0.07820799534761136
LVSASRDKTL	10	Unmodified	_LVSASRDKTL_					0	0	0		nc|ENSG00000109046|Q9Y6I7-3|WSB1;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-3|WSB1	nc|ENSG00000109046|Q9Y6I7-3|WSB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3170166015625	2	545.316763	1088.61897	0.44591	0.00024316	-0.03167	-1.727E-05	0.41424	0.00022589	545.3167857690152	80.248	3.793	80.313	79.277	83.07	0.065102					607	160	5	0	0	0	0.37133	1	21217	21217		8.7454	0	1	16780000			28128	2228	16264	16265	34694	34694					0.07820799534761136
LVSASRDKTL	10	Unmodified	_LVSASRDKTL_					0	0	0		nc|ENSG00000109046|Q9Y6I7-3|WSB1;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-3|WSB1	nc|ENSG00000109046|Q9Y6I7-3|WSB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3170166015625	2	545.316763	1088.61897	0.74945	0.00040869	-0.28207	-0.00015382	0.46737	0.00025487	545.3164535364513	83.286	2.4298	83.359	82.517	84.947	0.073097					180	95	4	0	0	0	0.37751	1	21817	21817		7.609	0	1	1921300			28129	2228	16264	16265	34695	34695					0.07820799534761136
LVSASRDKTL	10	Unmodified	_LVSASRDKTL_					0	0	0		nc|ENSG00000109046|Q9Y6I7-3|WSB1;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-3|WSB1	nc|ENSG00000109046|Q9Y6I7-3|WSB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.316650390625	2	545.316763	1088.61897	0.66981	0.00036526	-0.42679	-0.00023274	0.24301	0.00013252	545.3163019217113	88.877	1.9442	88.968	88.124	90.068	0.090569					160	108	2	0	0	0	0.39227	1	23748	23748		4.897	0	1	229250			28130	2228	16264	16265	34696	34696					0.07820799534761136
LVSASRDKTL	10	Unmodified	_LVSASRDKTL_					0	0	0		nc|ENSG00000109046|Q9Y6I7-3|WSB1;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-3|WSB1	nc|ENSG00000109046|Q9Y6I7-3|WSB1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	545.316763	1088.61897	0.5838	0.00031835	-0.41683	-0.00022731	0.16696	9.1048E-05	545.3162981489384	89.14	1.5371	89.14	88.049	89.586	0	0.04556	2.6078E-05	NaN	4.897	108	77	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246080			28131	2228	16264	16265							0.07820799534761136
LVSASRDKTL	10	Unmodified	_LVSASRDKTL_					0	0	0		nc|ENSG00000109046|Q9Y6I7-3|WSB1;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-3|WSB1	nc|ENSG00000109046|Q9Y6I7-3|WSB1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	545.316763	1088.61897	0.70027	0.00038187	-0.49245	-0.00026854	0.20781	0.00011332	545.3162050447052	89.177	2.0373	89.176	88.133	90.17	-0.00081635	0.081482	-5.6396E-05	NaN	4.897	167	123	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202340			28132	2228	16264	16265							0.07820799534761136
LVSATERKK	9	Unmodified	_LVSATERKK_					0	0	0			REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.3143310546875	2	516.314023	1030.61349	0.46504	0.00024011	-0.080923	-4.1782E-05	0.38412	0.00019833	516.314063938278	88.922	2.1153	88.922	88.403	90.518	0					346	134	7	0	0	0	0.31038	3	23609	23609;23652;23695		7.2892	7.2892	1	6571200	+		28133	18821	16265	16266	34697;34698;34699	34697					0.09941120742928433
LVSAYLFVKLS	11	Unmodified	_LVSAYLFVKLS_					0	0	0		PDZD8|p.F212_K214del|1|0.5|ENSG00000165650|chr10:117374585-117374593|ACTTGCCGA/-|inframe_deletion	PDZD8|p.F212_K214del|1|0.5|ENSG00000165650|chr10:117374585-117374593|ACTTGCCGA/-|inframe_deletion	PDZD8|p.F212_K214del|1|0.5|ENSG00000165650|chr10:117374585-117374593|ACTTGCCGA/-|inframe_deletion	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3724975585938	2	620.371007	1238.72746	0.012116	7.5163E-06	2.4225	0.0015028	2.4346	0.0015104	620.3730057137932	95.063	0.21075	95.146	95.019	95.229	0.082779					28	19	2	0	0	0	0.46655	1	25375	25375		2.4985	1.0166	1	114100			28134	13043	16266	16267	34700	34700					0.11764590785173823
LVSCIHHW	8	Unmodified	_LVSCIHHW_					0	0	0			REV__ENSG00000160505|ENST00000301295|NLRP4	REV__ENSG00000160505|ENST00000301295|NLRP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2671203613281	2	497.750005	993.485456	0.47427	0.00023607	-1.0652	-0.00053021	-0.59095	-0.00029414	497.7490932892195	37.257	0.56349	37.35	37.06	37.624	0.093018					24	20	2	0	0	0	0.34185	1	7685	7685		10.183	7.8807	1	140320	+		28135	16905	16267	16268	34701	34701					-0.011547180519414724
LVSCIHHW	8	Unmodified	_LVSCIHHW_					0	0	0			REV__ENSG00000160505|ENST00000301295|NLRP4	REV__ENSG00000160505|ENST00000301295|NLRP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.750005	993.485456	0.44646	0.00022223	-1.0718	-0.0005335	-0.62536	-0.00031128	497.74933806546295	37.283	0.46219	37.37	37.09	37.552	0.08741	-0.013009	-1.1044E-05	NaN	10.183	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178530	+		28136	16905	16267	16268							-0.011547180519414724
LVSEHFQHAF	10	Unmodified	_LVSEHFQHAF_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2278137207031	3	405.536612	1213.58801	0.060439	2.451E-05	0.057117	2.3163E-05	0.11756	4.7673E-05	405.5366377430084	45.294	0.73377	45.354	44.913	45.647	0.059837					38	25	2	0	0	0	0.3156	1	9987	9987		6.1918	0.78914	1	150390	+		28137	15501	16268	16269	34702	34702					-0.010243537794849544
LVSEHFQHAF	10	Unmodified	_LVSEHFQHAF_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.536612	1213.58801	0.023839	9.6678E-06	-0.39472	-0.00016007	-0.37088	-0.00015041	405.8707367502047	45.332	0.26316	45.397	45.173	45.436	0.065048	0.021685	-0.00035247	NaN	6.1918	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155570	+		28138	15501	16268	16269							-0.010243537794849544
LVSFPIGIYK	10	Unmodified	_LVSFPIGIYK_					0	0	0		nc|ENSG00000172731|Q8TCA0-3|LRRC20;ENSG00000172731|ENST00000446961|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.3408203125	2	568.839342	1135.66413	0.31035	0.00017654	-0.26278	-0.00014948	0.047575	2.7063E-05	568.8390957441777	66.691	1.242	66.691	66.183	67.425	0					91	35	4	0	0	0	0.0023784	2	16677	16677;16711		106.94	51.437	1	3604700			28139	6658	16269	16270	34703;34704	34703					0.10172650067943323
LVSFPIGIYK	10	Unmodified	_LVSFPIGIYK_					0	0	0		nc|ENSG00000172731|Q8TCA0-3|LRRC20;ENSG00000172731|ENST00000446961|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3403930664062	2	568.839342	1135.66413	0.38729	0.00022031	-0.39733	-0.00022602	-0.010043	-5.713E-06	568.8390298136662	66.579	1.1356	66.663	66.386	67.521	0.083832					114	40	5	0	0	0	0.0041921	4	16632	16632;16652;16702;16714		96.367	50.627	1	3816500			28140	6658	16269	16270	34705;34706;34707;34708	34705					0.10172650067943323
LVSFPIGIYK	10	Unmodified	_LVSFPIGIYK_					0	0	0		nc|ENSG00000172731|Q8TCA0-3|LRRC20;ENSG00000172731|ENST00000446961|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.3410034179688	2	568.839342	1135.66413	0.13452	7.652E-05	-0.10171	-5.7858E-05	0.032808	1.8662E-05	568.8391726106021	66.684	1.2037	66.67	66.222	67.425	-0.013588					97	37	4	0	0	0	0.0014935	2	16670	16670;16693		114.2	60.798	1	3637500			28141	6658	16269	16270	34709;34710	34709					0.10172650067943323
LVSFPSVIKF	10	Unmodified	_LVSFPSVIKF_					0	0	0			REV__nc|ENSG00000118997|Q8WXX0-4|DNAH7	REV__nc|ENSG00000118997|Q8WXX0-4|DNAH7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.83935546875	2	568.839342	1135.66413	0.13452	7.652E-05	-0.10171	-5.7858E-05	0.032808	1.8662E-05	568.8391726106021	66.684	1.2037	66.67	66.222	67.425	-0.013588					97	37	4	0	0	0	0.055898	1	16742	16742		57.722	0	1	3637500	+		28142	22968	16270	16271	34711	34711					0.10172650067943323
LVSFYLETYGA	11	Unmodified	_LVSFYLETYGA_					0	0	0		nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	631.8187866210938	2	631.818804	1261.62306	0.60784	0.00038405	-0.49103	-0.00031024	0.11681	7.3804E-05	631.8183996786051	83.954	0.8163	83.954	83.711	84.527	0					80	32	3	0	0	0	0.12239	2	22010	21957;22010		38.176	24.27	1	987270			28143	1838	16271	16272	34712;34713	34713					0.00270844237820711
LVSFYLETYGA	11	Unmodified	_LVSFYLETYGA_					0	0	0		nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	631.8182983398438	2	631.818804	1261.62306	0.50384	0.00031833	-0.45417	-0.00028695	0.04967	3.1383E-05	631.8183872640556	83.859	0.81998	83.936	83.698	84.518	0.077095					84	33	3	0	0	0	0.076087	3	21911	21903;21911;21963		45.7	35.626	1	1165800			28144	1838	16271	16272	34714;34715;34716	34715					0.00270844237820711
LVSFYLETYGA	11	Unmodified	_LVSFYLETYGA_					0	0	0		nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.8189697265625	2	631.818804	1261.62306	0.61591	0.00038915	-0.23231	-0.00014678	0.3836	0.00024237	631.8185795156062	83.987	0.95418	83.97	83.698	84.652	-0.016823					99	41	3	0	0	0	0.055577	2	21967	21967;22012		51.63	32.373	1	1778500			28145	1838	16271	16272	34717;34718	34717					0.00270844237820711
LVSGAPFSPR	10	Unmodified	_LVSGAPFSPR_					0	0	0		ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.8367919921875	2	515.787641	1029.56073	0.24581	0.00012679	0.12004	6.1913E-05	0.36585	0.0001887	515.7877366808515	49.789	0.895	49.81	49.257	50.152	0.020691					64	32	3	0	0	0	0.31039	1	11330	11330		18.146	4.6385	1	434440			28146	8446	16272	16273	34719	34719					0.04713162680127425
LVSHRATK	8	Unmodified	_LVSHRATK_					0	0	0			REV__ENSG00000197472|ENST00000339986|ZNF695	REV__ENSG00000197472|ENST00000339986|ZNF695	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.9148254394531	2	456.274701	910.534849	0.14157	6.4593E-05	2.9713	0.0013557	3.1129	0.0014203	456.27473651619056	38.716	0.37752	38.807	38.594	38.972	0.090881					16	13	2	0	0	0	0.32435	1	8122	8122		11.64	0.81637	1	87838	+		28147	18739	16273	16274	34720	34720					0.07600313228510913
LVSHVTRLL	9	Unmodified	_LVSHVTRLL_					0	0	0			REV__nc|ENSG00000164574|Q86SR1-3|GALNT10	REV__nc|ENSG00000164574|Q86SR1-3|GALNT10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7714233398438	2	519.326934	1036.63931	-0.062226	-3.2316E-05	0.58683	0.00030476	0.5246	0.00027244	519.3273380283064	61.639	1.0575	61.736	61.299	62.357	0.096989					106	38	5	0	0	0	0.25202	1	15327	15327		6.7232	0	1	2670000	+		28148	14874	16274	16275	34721	34721					0.12246014985225884
LVSITPKEF	9	Unmodified	_LVSITPKEF_					0	0	0		ENST00000566733.2_1_6:3912141-3912207:-|nuORF	ENST00000566733.2_1_6:3912141-3912207:-|nuORF	ENST00000566733.2_1_6:3912141-3912207:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2837524414062	2	517.30005	1032.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.232	1	81.232	80.732	81.732	0								0	0	0	0.18374	1	21150	21150		26.884	2.8631	1				28149	11988	16275	16276	34722	34722					0.07055797762859584
LVSITPKEF	9	Unmodified	_LVSITPKEF_					0	0	0		ENST00000566733.2_1_6:3912141-3912207:-|nuORF	ENST00000566733.2_1_6:3912141-3912207:-|nuORF	ENST00000566733.2_1_6:3912141-3912207:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2836303710938	2	517.30005	1032.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.373	1	81.373	80.873	81.873	0								0	0	0	0.21353	1	21194	21194		18.146	5.1039	1				28150	11988	16275	16276	34723	34723					0.07055797762859584
LVSIVSSLCL	10	Unmodified	_LVSIVSSLCL_					0	0	0			REV__ENST00000251181.8_1_14:105360511-105361292:+|nuORF	REV__ENST00000251181.8_1_14:105360511-105361292:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7354736328125	2	517.301736	1032.58892	0.76266	0.00039453	3.2833	0.0016984	4.0459	0.002093	517.3049218309089	50.715	1.2908	50.715	50.166	51.456	0					124	47	5	0	0	0	0.31629	1	11624	11624		10.074	2.1638	1	1305600	+		28151	19522	16276	16277	34724	34724					0.07392724545184137
LVSKMLIKK	9	Unmodified	_LVSKMLIKK_					0	0	0			REV__ENST00000330198.8_2_3:197770265-197770433:+|nuORF	REV__ENST00000330198.8_2_3:197770265-197770433:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3538208007812	2	530.351563	1058.68857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.2	1	113.21	112.71	113.71	0.014824								0	0	0	0.2672	1	29453	29453		0.52476	0.52476	1		+		28152	20032	16277	16278	34725	34725					0.16157586949816505
LVSLKPCKA	9	Unmodified	_LVSLKPCKA_					0	0	0		nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;ENST00000492449.5_1_3:184603882-184769810:+|nuORF	nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7907409667969	2	479.791338	957.568123	0.34599	0.000166	-0.92798	-0.00044524	-0.58199	-0.00027923	479.79073461977856	19.762	0.58253	19.707	19.395	19.978	-0.055693					31	20	2	0	0	0	0.25622	1	2359	2359		7.2892	2.0586	1	50636			28153	5267	16278	16279	34726	34726					0.08764178956187152
LVSMCGLQF	9	Unmodified	_LVSMCGLQF_					0	0	0		ENST00000369660.8_1_X:153712497-153712797:-|nuORF	ENST00000369660.8_1_X:153712497-153712797:-|nuORF	ENST00000369660.8_1_X:153712497-153712797:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.8320007324219	2	499.245906	996.477259	0.45145	0.00022539	0.21801	0.00010884	0.66947	0.00033423	499.24566825343254	37.935	0.73077	37.935	37.646	38.377	0					55	25	3	0	0	0	0.22596	1	7837	7837		15.847	1.2655	1	214610			28154	9780	16279	16280	34727	34727					-0.021120330835742607
LVSPPHRRGP	10	Unmodified	_LVSPPHRRGP_					0	0	0		ENST00000597072.1_1_19:50812876-50813044:+|nuORF	ENST00000597072.1_1_19:50812876-50813044:+|nuORF	ENST00000597072.1_1_19:50812876-50813044:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.324951171875	2	558.325257	1114.63596	0.36624	0.00020448	-0.53361	-0.00029793	-0.16736	-9.3444E-05	558.3246429415933	89.975	0.79398	89.975	89.69	90.484	0					163	66	3	0	0	0	0.38515	1	23827	23827		6.2058	2.2614	1	381520			28155	12231	16280	16281	34728	34728					0.08322764931222082
LVSPPHRRGP	10	Unmodified	_LVSPPHRRGP_					0	0	0		ENST00000597072.1_1_19:50812876-50813044:+|nuORF	ENST00000597072.1_1_19:50812876-50813044:+|nuORF	ENST00000597072.1_1_19:50812876-50813044:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3247680664062	2	558.325257	1114.63596	0.37172	0.00020754	-0.68021	-0.00037978	-0.30849	-0.00017224	558.3245913787237	89.91	0.75346	89.91	89.638	90.391	0.00039673					134	63	3	0	0	0	0.36786	1	23805	23805		9.3831	3.1773	1	421460			28156	12231	16280	16281	34729	34729					0.08322764931222082
LVSPQSPQK	9	Unmodified	_LVSPQSPQK_					0	0	0		nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6	nc|ENSG00000113916|P41182-2|BCL6	nc|ENSG00000113916|P41182-2|BCL6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.279541015625	2	492.279649	982.544745	0.48354	0.00023804	-0.085663	-4.217E-05	0.39788	0.00019587	492.2792074371322	21.623	0.81523	21.523	20.989	21.804	-0.10034					69	28	3	0	0	0	0.18208	1	2901	2901		26.268	0	1	240160			28157	2539	16281	16282	34730	34730					0.05277456443241135
LVSPRLQPF	9	Unmodified	_LVSPRLQPF_					0	0	0		ENSG00000168792|ENST00000307201|ABHD15	ENSG00000168792|ENST00000307201|ABHD15	ENSG00000168792|ENST00000307201|ABHD15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.274169921875	2	528.813659	1055.61277	0.53004	0.00028029	-0.096042	-5.0788E-05	0.434	0.00022951	528.813298564247	68.969	0.66389	68.969	68.675	69.339	0					44	23	3	0	0	0	0.24739	1	17408	17408		8.5933	0	1	247180			28158	6300	16282	16283	34731	34731					0.08718326093890028
LVSQLCRHY	9	Unmodified	_LVSQLCRHY_					0	0	0			REV__nc|ENSG00000123989|Q8IZ52-2|CHPF	REV__nc|ENSG00000123989|Q8IZ52-2|CHPF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.8031005859375	2	559.792401	1117.57025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.736	1	37.827	37.327	38.327	0.090881								0	0	0	0.22065	1	7800	7800		15.847	5.0233	1		+		28159	15204	16283	16284	34732	34732					0.016166076940180574
LVSQPHTLSF	10	Unmodified	_LVSQPHTLSF_					0	0	0		ENST00000413916.5_1_7:44807392-44807602:+|nuORF	ENST00000413916.5_1_7:44807392-44807602:+|nuORF	ENST00000413916.5_1_7:44807392-44807602:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3246459960938	2	564.806031	1127.59751	0.67967	0.00038388	3.2057	0.0018106	3.8854	0.0021945	564.8075922720951	54.821	0.53909	54.884	54.566	55.105	0.063202					32	19	2	0	0	0	0.27772	1	13018	13018		10.074	0	1	583530			28160	10297	16284	16285	34733	34733					0.038814145060541705
LVSSLTKIQ	9	Unmodified	_LVSSLTKIQ_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.27716064453125	2	494.8055	987.596446	0.23866	0.00011809	0.50576	0.00025025	0.74442	0.00036834	494.80569756187776	23.564	0.37867	23.564	23.39	23.769	0					23	12	2	0	0	0	0.25622	1	3487	3487		7.2892	7.2892	1	74854			28161	3427	16285	16286	34734	34734					0.10215200137122338
LVSSRNRRSPA	11	Unmodified	_LVSSRNRRSPA_					0	0	0			REV__ENST00000470400.5_1_3:142720470-142740424:+|nuORF	REV__ENST00000470400.5_1_3:142720470-142740424:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.8555908203125	2	621.854909	1241.69527	-0.13686	-8.5107E-05	0.39807	0.00024754	0.26121	0.00016244	621.8552714682447	15.081	0.4692	14.971	14.789	15.259	-0.10981					34	16	3	0	0	0	0.4745	1	926	926		0	0	1	97304	+		28162	21350	16286	16287	34735	34735					0.08408616154747506
LVSTALRQL	9	Unmodified	_LVSTALRQL_					0	0	0			REV__ENSG00000198730|ENST00000361367|CTR9	REV__ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.81134033203125	2	500.811116	999.60768	0.32546	0.00016299	0.37028	0.00018544	0.69574	0.00034843	500.8112497693693	20.102	0.38631	20.102	19.849	20.235	0					21	14	2	0	0	0	0.29176	1	2422	2422		10.074	0.6908	1	215250	+		28163	18851	16287	16288	34736	34736					0.10786022231263814
LVSTALRQL	9	Unmodified	_LVSTALRQL_					0	0	0			REV__ENSG00000198730|ENST00000361367|CTR9	REV__ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8108825683594	2	500.811116	999.60768	0.51058	0.00025571	0.054514	2.7301E-05	0.5651	0.00028301	500.81107845506347	20.345	0.38951	20.235	19.933	20.322	-0.11003					24	14	2	0	0	0	0.23007	1	2489	2489		19.257	1.1106	1	181090	+		28164	18851	16287	16288	34737	34737					0.10786022231263814
LVSTLLPIV	9	Unmodified	_LVSTLLPIV_					0	0	0			REV__ENSG00000073067|ENST00000308919|CYP2W1	REV__ENSG00000073067|ENST00000308919|CYP2W1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.8155822753906	2	477.815336	953.616119	0.36445	0.00017414	0.33539	0.00016026	0.69985	0.0003344	477.81533531934326	94.001	0.75002	94	93.705	94.455	-0.00051117					145	54	4	0	0	0	0.048175	1	25021	25021		53.576	9.1686	1	964660	+		28165	13771	16288	16289	34738	34738					0.13745576147891825
LVSTPQALR	9	Unmodified	_LVSTPQALR_					0	0	0			REV__ENSG00000165507|ENST00000298295|DEPP1	REV__ENSG00000165507|ENST00000298295|DEPP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.27947998046875	2	492.795466	983.57638	0.5246	0.00025852	-0.58011	-0.00028588	-0.055512	-2.7356E-05	492.79525066420433	20.067	2.2041	20.011	19.337	21.542	-0.055693					119	78	3	0	0	0	0.25526	1	2880	2880		7.9102	0	1	271650	+		28166	17240	16289	16290	34739	34739					0.08393449197171776
LVSVHEPLVE	10	Unmodified	_LVSVHEPLVE_					0	0	0			REV__ENSG00000178567|ENST00000322716|EPM2AIP1	REV__ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.7669677734375	2	561.313689	1120.61282	0.63185	0.00035467	4.3574	0.0024459	4.9892	0.0028005	561.315829904468	32.039	0.723	32.082	31.909	32.632	0.042362					55	25	3	0	0	0	0.30586	1	6022	6022		19.257	2.3147	1	823070	+		28167	18041	16290	16291	34740	34740					0.05734281303239186
LVSVRRYRLFT	11	Unmodified	_LVSVRRYRLFT_					0	0	0		ENST00000525188.5_1_11:20409237-20415368:+|nuORF	ENST00000525188.5_1_11:20409237-20415368:+|nuORF	ENST00000525188.5_1_11:20409237-20415368:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2924499511719	3	470.617377	1408.8303	0.018957	8.9217E-06	-1.1159	-0.00052517	-1.097	-0.00051625	470.95118360396344	42.495	0.24248	42.58	42.434	42.676	0.085197					11	8	2	0	0	0	0.33287	1	9274	9274		2.8433	2.3373	1	103490			28168	11534	16291	16292	34741	34741					0.14224096296493371
LVSYMLIKI	9	Unmodified	_LVSYMLIKI_					0	0	0		ENST00000485101.5_1_3:186505155-186505251:+|nuORF	ENST00000485101.5_1_3:186505155-186505251:+|nuORF	ENST00000485101.5_1_3:186505155-186505251:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3306274414062	2	540.330296	1078.64604	0.19338	0.00010449	0.11059	5.9755E-05	0.30397	0.00016424	540.3304122307428	81.375	1.076	81.444	81.078	82.154	0.068993					181	51	5	0	0	0	0.30623	1	21172	21172		7.9102	7.9102	1	1439000			28169	11086	16292	16293	34742	34742					0.1098619182157563
LVTAEVPLF	9	Unmodified	_LVTAEVPLF_					0	0	0			REV__ENSG00000155761|ENST00000336338|SPAG17	REV__ENSG00000155761|ENST00000336338|SPAG17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.76068115234375	2	494.789318	987.564084	0.43068	0.0002131	-2.3112	-0.0011436	-1.8805	-0.00093047	494.78815336993915	76.718	0.43024	76.718	76.501	76.931	0					18	15	2	0	0	0	0.21137	1	19816	19816		24.674	5.2349	1	102230	+		28170	16713	16293	16294	34743	34743					0.0698041273412855
LVTAEVPLF	9	Unmodified	_LVTAEVPLF_					0	0	0			REV__ENSG00000155761|ENST00000336338|SPAG17	REV__ENSG00000155761|ENST00000336338|SPAG17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7608947753906	2	494.789318	987.564084	0.55807	0.00027613	-2.7737	-0.0013724	-2.2156	-0.0010962	494.7878507414092	76.785	0.5078	76.754	76.422	76.93	-0.031487					23	18	2	0	0	0	0.23147	1	19811	19811		19.439	4.6007	1	96596	+		28171	16713	16293	16294	34744	34744					0.0698041273412855
LVTCLEQRKE	10	Unmodified	_LVTCLEQRKE_					0	0	0		ENSG00000131127|ENST00000240499|ZNF141;ENST00000503699.1_1_4:331733-352211:+|nuORF	ENSG00000131127|ENST00000240499|ZNF141	ENSG00000131127|ENST00000240499|ZNF141	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.20367431640625	3	406.888546	1217.64381	-0.22443	-9.1318E-05	0.11909	4.8457E-05	-0.10534	-4.2861E-05	406.88899600598216	18.14	1.1462	18.022	17.467	18.614	-0.11739					109	39	5	0	0	0	0.31969	1	1802	1802		5.7834	0	1	404460			28172	3546	16294	16295	34745	34745					0.04369111345795318
LVTDKIKVT	9	Unmodified	_LVTDKIKVT_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;ENSG00000133401|ENST00000438447|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8108825683594	2	508.82115	1015.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.992	1	58.992	58.492	59.492	0								0	0	0	0.21009	1	14336	14336		19.257	1.1106	1				28173	3710	16295	16296	34746	34746					0.12055773171221063
LVTDKIKVT	9	Unmodified	_LVTDKIKVT_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;ENSG00000133401|ENST00000438447|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8108825683594	2	508.82115	1015.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.862	1	58.953	58.453	59.453	0.091301								0	0	0	0.21009	1	14292	14292		19.257	1.1106	1				28174	3710	16295	16296	34747	34747					0.12055773171221063
LVTGANRGIG	10	Unmodified	_LVTGANRGIG_					0	0	0		ENSG00000159231|ENST00000290354|CBR3	ENSG00000159231|ENST00000290354|CBR3	ENSG00000159231|ENST00000290354|CBR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2773742675781	2	479.277441	956.540328	0.32241	0.00015452	-0.065257	-3.1276E-05	0.25715	0.00012325	479.2772482615654	71.811	1.9108	71.867	71.319	73.23	0.056572					209	69	4	0	0	0	0.38515	1	18258	18258		6.2058	1.4498	1	952830			28175	5395	16296	16297	34748	34748					0.060319920203255606
LVTGANRGIG	10	Unmodified	_LVTGANRGIG_					0	0	0		ENSG00000159231|ENST00000290354|CBR3	ENSG00000159231|ENST00000290354|CBR3	ENSG00000159231|ENST00000290354|CBR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2773132324219	2	479.277441	956.540328	0.36689	0.00017584	-0.17516	-8.395E-05	0.19173	9.1893E-05	479.2772156005125	71.983	1.9999	71.956	71.211	73.211	-0.027275					217	71	4	0	0	0	0.38515	2	18310	18310;18353		6.2058	6.2058	1	1020000			28176	5395	16296	16297	34749;34750	34749					0.060319920203255606
LVTGFLMAK	9	Unmodified	_LVTGFLMAK_					0	0	0			REV__ENST00000564646.1_1_16:89005738-89005978:-|nuORF	REV__ENST00000564646.1_1_16:89005738-89005978:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2942199707031	2	490.285889	978.557224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.336	1	51.345	50.845	51.845	0.0095634								0	0	0	0.21726	1	11963	11963		16.942	2.104	1		+		28177	22345	16297	16298	34751	34751					0.06708776581911025
LVTHTDAVK	9	Unmodified	_LVTHTDAVK_					0	0	0		nc|ENSG00000073803|O43283-5|MAP3K13;nc|ENSG00000073803|O43283-4|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13;ENST00000433092.5_1_3:185155245-185169222:+|nuORF	nc|ENSG00000073803|O43283-5|MAP3K13	nc|ENSG00000073803|O43283-5|MAP3K13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.26727294921875	2	492.279649	982.544745	0.34635	0.0001705	-0.017547	-8.638E-06	0.3288	0.00016186	492.27924246685194	21.621	0.87947	21.572	20.951	21.83	-0.049377					69	30	3	0	0	0	0.18803	1	2921	2921		25.399	1.3787	1	201780			28178	1006	16298	16299	34752	34752					0.052774564432297666
LVTNRPGVLF	10	Unmodified	_LVTNRPGVLF_					0	0	0		nc|ENSG00000079435|Q05469-2|LIPE;ENSG00000079435|ENST00000244289|LIPE	nc|ENSG00000079435|Q05469-2|LIPE	nc|ENSG00000079435|Q05469-2|LIPE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7835693359375	2	558.332216	1114.64988	0.27966	0.00015614	0.17645	9.8519E-05	0.45611	0.00025466	558.3323712619678	59.007	0.44114	59.007	58.8	59.241	0					35	15	3	0	0	0	0.2504	1	14321	14321		34.102	23.279	1	284250			28179	1135	16299	16300	34753	34753					0.0971399763966474
LVTNRPGVLF	10	Unmodified	_LVTNRPGVLF_					0	0	0		nc|ENSG00000079435|Q05469-2|LIPE;ENSG00000079435|ENST00000244289|LIPE	nc|ENSG00000079435|Q05469-2|LIPE	nc|ENSG00000079435|Q05469-2|LIPE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.783203125	2	558.332216	1114.64988	0.37351	0.00020854	0.045234	2.5255E-05	0.41875	0.0002338	558.3321007308183	58.865	0.53024	58.956	58.708	59.238	0.091305					32	18	2	0	0	0	0.16984	1	14294	14294		54.774	26.287	1	253080			28180	1135	16299	16300	34754	34754					0.0971399763966474
LVTNRPGVLF	10	Unmodified	_LVTNRPGVLF_					0	0	0		nc|ENSG00000079435|Q05469-2|LIPE;ENSG00000079435|ENST00000244289|LIPE	nc|ENSG00000079435|Q05469-2|LIPE	nc|ENSG00000079435|Q05469-2|LIPE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.783447265625	2	558.332216	1114.64988	0.33294	0.00018589	0.35613	0.00019884	0.68907	0.00038473	558.3324077046549	58.987	0.4764	58.973	58.746	59.222	-0.014267					29	16	3	0	0	0	0.20667	1	14321	14321		37.974	22.127	1	291020			28181	1135	16299	16300	34755	34755					0.0971399763966474
LVTPIYYVF	9	Unmodified	_LVTPIYYVF_					0	0	0		ENSG00000163293|ENST00000295461|NIPAL1	ENSG00000163293|ENST00000295461|NIPAL1	ENSG00000163293|ENST00000295461|NIPAL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.8135986328125	2	557.812793	1113.61103	0.33923	0.00018923	0.15982	8.9151E-05	0.49906	0.00027838	557.8130135598291	88.884	0.30047	88.883	88.698	88.998	-0.00081635					14	11	2	0	0	0	0.155	1	23503	23503		30.225	0	1	91737			28182	5662	16300	16301	34756	34756					0.05877272285283652
LVTQLQQLF	9	Unmodified	_LVTQLQQLF_					0	0	0			REV__ENST00000443619.6_1_2:65541275-65559155:-|nuORF	REV__ENST00000443619.6_1_2:65541275-65559155:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3168334960938	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.42	1	119.39	118.89	119.89	-0.024361								0	0	0	0.24715	1	30828	30828		7.2892	1.9923	1		+		28183	21065	16301	16302	34757	34757					0.08222889028479585
LVTRTIPQI	9	Unmodified	_LVTRTIPQI_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7925415039062	2	520.826766	1039.63898	0.25461	0.00013261	-1.6839	-0.00087702	-1.4293	-0.00074441	520.8262895998222	73.448	0.15879	73.502	73.447	73.606	0.053833					6	5	2	0	0	0	0.25323	1	18768	18768		10.074	5.3179	1	73472	+		28184	14768	16302	16303	34758	34758					0.12074595265380594
LVTSFTDYF	9	Unmodified	_LVTSFTDYF_					0	0	0		ENST00000545294.5_1_1:162492693-162492849:+|nuORF	ENST00000545294.5_1_1:162492693-162492849:+|nuORF	ENST00000545294.5_1_1:162492693-162492849:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.7662963867188	2	546.76604	1091.51753	0.46181	0.0002525	0.2918	0.00015954	0.75361	0.00041205	546.7661574338995	45.814	2.3725	45.874	45.475	47.848	0.059834					164	86	2	0	0	0	0.14205	1	10288	10288		32.117	3.6301	1	4358100			28185	11751	16303	16304	34759	34759					-0.024570718878067055
LVTSFTDYF	9	Unmodified	_LVTSFTDYF_					0	0	0		ENST00000545294.5_1_1:162492693-162492849:+|nuORF	ENST00000545294.5_1_1:162492693-162492849:+|nuORF	ENST00000545294.5_1_1:162492693-162492849:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7664794921875	2	546.76604	1091.51753	0.69329	0.00037907	0.032763	1.7914E-05	0.72606	0.00039698	546.7659460161714	45.827	2.3318	45.892	45.461	47.792	0.065048					203	84	4	0	0	0	0.14205	1	10247	10247		32.117	3.6301	1	4522500			28186	11751	16303	16304	34760	34760					-0.024570718878067055
LVTSSLQK	8	Unmodified	_LVTSSLQK_					0	0	0			REV__ENSG00000033800|ENST00000249636|PIAS1	REV__ENSG00000033800|ENST00000249636|PIAS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.5644226074219	2	438.263468	874.512382	-0.43499	-0.00019064	0.82384	0.00036106	0.38885	0.00017042	438.2634124867264	35.249	1.0973	35.325	34.904	36.001	0.075306					71	39	3	0	0	0	0.34319	1	7164	7164		5.7604	0	1	812370	+		28187	13504	16304	16305	34761	34761					0.07010669040244011
LVTSYMLL	8	Unmodified	_LVTSYMLL_					0	0	0			REV__nc|ENSG00000130958|Q76EJ3-2|SLC35D2	REV__nc|ENSG00000130958|Q76EJ3-2|SLC35D2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2427673339844	2	470.264622	938.514691	0.25769	0.00012118	2.9998	0.0014107	3.2575	0.0015319	470.2664185715386	29.463	0.66036	29.463	29.089	29.75	0					51	23	3	0	0	0	0.344	1	5197	5197		2.5775	0	1	250020	+		28188	15492	16305	16306	34762	34762					0.042973814536935606
LVTSYMLL	8	Unmodified	_LVTSYMLL_					0	0	0			REV__nc|ENSG00000130958|Q76EJ3-2|SLC35D2	REV__nc|ENSG00000130958|Q76EJ3-2|SLC35D2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2426452636719	2	470.264622	938.514691	0.16329	7.6789E-05	2.9354	0.0013804	3.0987	0.0014572	470.26631729014605	29.372	0.66548	29.385	29.08	29.746	0.012264					41	22	2	0	0	0	0.34337	1	5189	5189		5.2307	0	1	185870	+		28189	15492	16305	16306	34763	34763					0.042973814536935606
LVTTDRPAV	9	Unmodified	_LVTTDRPAV_					0	0	0			REV__chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1	REV__chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2790222167969	2	486.279649	970.544745	-1.2141	-0.00059039	-1.208	-0.00058742	-2.4221	-0.0011778	486.27901276869096	34.863	0.60535	34.863	34.646	35.251	0					62	21	4	0	0	0	0.18803	1	6894	6894		25.399	1.3787	1	1090200	+		28190	13153	16306	16307	34764	34764					0.05829456443234449
LVTTEPAIN	9	Unmodified	_LVTTEPAIN_					0	0	0		ENST00000487440.5_1_3:47281337-47324087:-|nuORF;nc|ENSG00000088727|Q9HAQ2-2|KIF9;ENSG00000088727|ENST00000684063|KIF9	ENST00000487440.5_1_3:47281337-47324087:-|nuORF	ENST00000487440.5_1_3:47281337-47324087:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2774963378906	2	479.266207	956.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.813	1	72.867	72.367	73.367	0.053833								0	0	0	0.23091	1	18572	18572		12.532	0.89125	1				28191	1327	16307	16308	34765	34765					0.03786347832044612
LVTTNKTK	8	Unmodified	_LVTTNKTK_					0	0	0		ENST00000339438.10_1_1:115292720-115292798:-|nuORF	ENST00000339438.10_1_1:115292720-115292798:-|nuORF	ENST00000339438.10_1_1:115292720-115292798:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.26873779296875	2	452.776742	903.538931	-0.67311	-0.00030477	0.7152	0.00032382	0.042083	1.9054E-05	452.776988248567	34.717	0.88445	34.795	34.505	35.39	0.077381					72	31	3	0	0	0	0.43758	1	6982	6982		10.074	0.6908	1	1238800			28192	9511	16308	16309	34766	34766					0.08330357931572507
LVTTRGRP	8	Unmodified	_LVTTRGRP_					0	0	0			REV__ENST00000473572.2_1_19:36501484-36501613:-|nuORF	REV__ENST00000473572.2_1_19:36501484-36501613:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2745666503906	2	450.274701	898.534849	0.39145	0.00017626	-0.41724	-0.00018787	-0.025788	-1.1612E-05	450.2744348406221	82.801	1.3799	82.801	82.358	83.738	0					151	51	4	0	0	0	0.45169	1	21724	21724		5.2307	0.47466	1	11029000	+		28193	21221	16309	16310	34767	34767					0.08152313228515595
LVTTRIKL	8	Unmodified	_LVTTRIKL_					0	0	0			REV__ENST00000454703.6_1_4:185677671-185677848:-|nuORF	REV__ENST00000454703.6_1_4:185677671-185677848:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2701110839844	2	472.318577	942.622602	-0.23838	-0.00011259	-0.4791	-0.00022629	-0.71748	-0.00033888	472.31830784130267	13.381	0.12144	13.381	13.336	13.457	0					6	3	2	0	0	0	0.34319	1	394	394		5.7604	2.8712	1	17919	+		28194	21151	16310	16311	34768	34768					0.1489951409926107
LVTTRIKL	8	Unmodified	_LVTTRIKL_					0	0	0			REV__ENST00000454703.6_1_4:185677671-185677848:-|nuORF	REV__ENST00000454703.6_1_4:185677671-185677848:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2703552246094	2	472.318577	942.622602	-0.17047	-8.0514E-05	-1.1098	-0.00052418	-1.2803	-0.0006047	472.3179876528135	13.473	0.16679	13.374	13.249	13.416	-0.099291					7	5	2	0	0	0	0.34319	1	417	417		5.7604	2.8712	1	18162	+		28195	21151	16310	16311	34769	34769					0.1489951409926107
LVTTRLQSHLK	11	Unmodified	_LVTTRLQSHLK_					0	0	0			REV__nc|ENSG00000132613|Q765P7-2|MTSS2	REV__nc|ENSG00000132613|Q765P7-2|MTSS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	648.3932495117188	2	648.393336	1294.77212	0.069693	4.5189E-05	-0.026305	-1.7056E-05	0.043388	2.8132E-05	648.3933653466829	98.863	1.1234	98.863	98.462	99.586	0					315	135	4	0	0	0	0.46704	1	26420	26420		2.7352	1.4057	1	483420	+		28196	15583	16311	16312	34770	34770					0.13652414651210165
LVTTRLQSHLK	11	Unmodified	_LVTTRLQSHLK_					0	0	0			REV__nc|ENSG00000132613|Q765P7-2|MTSS2	REV__nc|ENSG00000132613|Q765P7-2|MTSS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	648.3931884765625	2	648.393336	1294.77212	0.15797	0.00010243	0.030807	1.9975E-05	0.18878	0.0001224	648.393405625132	98.676	1.1133	98.727	98.419	99.533	0.050896					328	144	4	0	0	0	0.45629	1	26422	26422		4.5289	3.3355	1	751740	+		28197	15583	16311	16312	34771	34771					0.13652414651210165
LVTTRLQSHLK	11	Unmodified	_LVTTRLQSHLK_					0	0	0			REV__nc|ENSG00000132613|Q765P7-2|MTSS2	REV__nc|ENSG00000132613|Q765P7-2|MTSS2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	648.393336	1294.77212	0.069693	4.5189E-05	-0.026305	-1.7056E-05	0.043388	2.8132E-05	648.3933653466829	98.863	1.1234	98.863	98.462	99.586	0	0.052021	-1.1926E-05	NaN	4.5289	315	135	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	483420	+		28198	15583	16311	16312							0.13652414651210165
LVTTVPPCRV	10	Unmodified	_LVTTVPPCRV_					0	0	0			REV__nc|ENSG00000107282|Q02410-2|APBA1	REV__nc|ENSG00000107282|Q02410-2|APBA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.326171875	2	542.812802	1083.61105	0.69632	0.00037797	-2.7619	-0.0014992	-2.0656	-0.0011212	542.8112499001851	64.465	0.24899	64.465	64.342	64.591	0					11	8	2	0	0	0	0.3156	1	15999	15999		10.824	1.4765	1	81812	+		28199	14550	16312	16313	34772	34772					0.07258949013635174
LVTVIGNLGM	10	Unmodified	_LVTVIGNLGM_					0	0	0		ENSG00000150261|ENST00000279783|OR8K1	ENSG00000150261|ENST00000279783|OR8K1	ENSG00000150261|ENST00000279783|OR8K1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.669189453125	2	508.794078	1015.5736	0.17581	8.9449E-05	0.9995	0.00050854	1.1753	0.00059799	509.2960575172176	18.415	0.39957	18.415	18.188	18.588	0					22	13	3	0	0	0	0.32088	1	1912	1912		2.7352	0	1	34285			28200	4904	16313	16314	34773	34773					0.06643857748031223
LVTWHVPI	8	Unmodified	_LVTWHVPI_					0	0	0		ENST00000518622.5_1_19:48714695-48714965:-|nuORF	ENST00000518622.5_1_19:48714695-48714965:-|nuORF	ENST00000518622.5_1_19:48714695-48714965:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.771240234375	2	482.78437	963.554188	0.20444	9.8699E-05	-0.47527	-0.00022945	-0.27083	-0.00013075	482.7840173657821	67.473	0.85082	67.473	67.25	68.101	0					44	29	2	0	0	0	0.34046	1	16900	16900		14.582	2.0501	1	122690			28201	11446	16314	16315	34774	34774					0.07095269519413705
LVTWVTSVL	9	Unmodified	_LVTWVTSVL_					0	0	0			REV__ENST00000369774.8_3_10:105360094-105360547:-|nuORF	REV__ENST00000369774.8_3_10:105360094-105360547:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.810546875	2	509.302593	1016.59063	0.42319	0.00021553	0.12716	6.4765E-05	0.55035	0.0002803	509.302401053713	64.516	1.0829	64.507	64.017	65.1	-0.0095291					57	39	2	0	0	0	0.23783	1	15916	15916		7.9102	0	1	785920	+		28202	20361	16315	16316	34775	34775					0.08300101625468415
LVVAAEID	8	Unmodified	_LVVAAEID_					0	0	0		ENST00000419462.1_1_8:102381113-102381542:+|nuORF;nc|ENSG00000228224|Q9BZK3|NACA4P	ENST00000419462.1_1_8:102381113-102381542:+|nuORF	ENST00000419462.1_1_8:102381113-102381542:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5906982421875	2	415.236919	828.459284	-0.094666	-3.9309E-05	3.9308	0.0016322	3.8362	0.0015929	415.237782456562	44.072	0.32739	44.072	43.878	44.206	0					12	11	2	0	0	0	0.34185	1	9718	9718		5.7604	2.8712	1	42396			28203	10351	16316	16317	34776	34776					0.038192912575482296
LVVAPIYILLD	11	Unmodified	_LVVAPIYILLD_					0	0	0			REV__ENSG00000088035|ENST00000263440|ALG6	REV__ENSG00000088035|ENST00000263440|ALG6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.25750732421875	3	410.256564	1227.74786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.853	1	84.84	84.34	85.34	-0.01284								0	0	0	0.38083	1	22249	22249		1.4551	0.24029	1		+		28204	13999	16317	16318	34777	34777					0.14309761444974356
LVVCFLVF	8	Unmodified	_LVVCFLVF_					0	0	0		ENST00000547430.2_1_14:62207096-62207198:+|nuORF	ENST00000547430.2_1_14:62207096-62207198:+|nuORF	ENST00000547430.2_1_14:62207096-62207198:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7317810058594	2	470.27225	938.529947	0.34846	0.00016387	0.50213	0.00023614	0.85059	0.00040001	470.2725931623589	87.115	0.92264	87.109	86.557	87.48	-0.0056229					61	38	2	0	0	0	0.3439	1	22888	22888		2.8892	0	1	243140			28205	11766	16318	16319	34778	34778					0.05822293041535431
LVVHLKRF	8	Unmodified	_LVVHLKRF_					0	0	0		nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15;ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4	nc|ENSG00000135655|Q9Y4E8-2|USP15;ENST00000485450.5_1_3:49315728-49349110:-|nuORF	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.76361083984375	2	506.326737	1010.63892	0.31664	0.00016032	-0.93459	-0.00047321	-0.61795	-0.00031288	506.32612165489036	66.941	0.62	66.941	66.573	67.193	0					31	21	2	0	0	0	0.34046	1	16716	16716		14.582	0	1	124370			28206	3891;2555	16319	16320	34779	34779					0.13402640056040127
LVVIEDVQPL	10	Unmodified	_LVVIEDVQPL_					0	0	0			REV__ENSG00000023839|ENST00000647814|ABCC2	REV__ENSG00000023839|ENST00000647814|ABCC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8007202148438	2	562.831714	1123.64888	0.11081	6.2369E-05	-2.2623	-0.0012733	-2.1515	-0.0012109	562.8302178782994	25.807	0.48664	25.768	25.582	26.069	-0.038671					25	16	2	0	0	0	0.31926	1	4172	4172		5.7319	1.4026	1	228800	+		28207	13473	16320	16321	34780	34780					0.09199738480083397
LVVKTLIVA	9	Unmodified	_LVVKTLIVA_					0	0	0		ENST00000488014.5_1_1:84386258-84403687:-|nuORF;ENST00000472688.5_1_1:84383321-84408355:-|nuORF;nc|ENSG00000137941|Q6ZT98-2|TTLL7;nc|ENSG00000137941|Q6ZT98-3|TTLL7;ENSG00000137941|ENST00000260505|TTLL7	ENST00000488014.5_1_1:84386258-84403687:-|nuORF	ENST00000488014.5_1_1:84386258-84403687:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.76373291015625	2	478.331153	954.647754	0.15162	7.2525E-05	0.075622	3.6172E-05	0.22724	0.0001087	478.33111812488033	58.919	1.1215	58.919	58.468	59.59	0					61	38	2	0	0	0	0.2451	1	14297	14297		15.847	0	1	144090			28208	4095	16321	16322	34781	34781					0.16861568901856572
LVVLGSRLAP	10	Unmodified	_LVVLGSRLAP_					0	0	0		ENST00000361951.4_1_1:173794025-173794118:+|nuORF	ENST00000361951.4_1_1:173794025-173794118:+|nuORF	ENST00000361951.4_1_1:173794025-173794118:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.3444213867188	2	512.829309	1023.64407	0.32389	0.0001661	-0.10753	-5.5147E-05	0.21636	0.00011096	512.8291228147341	67.959	0.8257	67.959	67.45	68.275	0					59	29	3	0	0	0	0.31267	1	17177	17177		14.838	1.3304	1	440490			28209	9704	16322	16323	34782	34782					0.13318899127978057
LVVLGSRLAP	10	Unmodified	_LVVLGSRLAP_					0	0	0		ENST00000361951.4_1_1:173794025-173794118:+|nuORF	ENST00000361951.4_1_1:173794025-173794118:+|nuORF	ENST00000361951.4_1_1:173794025-173794118:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.344482421875	2	512.829309	1023.64407	0.20225	0.00010372	-0.10701	-5.4877E-05	0.095239	4.8841E-05	512.8291690041099	68.01	0.80301	67.994	67.423	68.226	-0.016296					47	28	2	0	0	0	0.31051	1	17168	17168		16.942	3.4344	1	342620			28210	9704	16322	16323	34783	34783					0.13318899127978057
LVVLGSRLAP	10	Unmodified	_LVVLGSRLAP_					0	0	0		ENST00000361951.4_1_1:173794025-173794118:+|nuORF	ENST00000361951.4_1_1:173794025-173794118:+|nuORF	ENST00000361951.4_1_1:173794025-173794118:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	512.829309	1023.64407	0.38435	0.0001971	-0.27838	-0.00014276	0.10597	5.4343E-05	512.8291280538912	67.867	1.1521	67.945	67.094	68.246	0.078041	-0.020605	-0.0001238	NaN	16.942	75	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432410			28211	9704	16322	16323							0.13318899127978057
LVVLHLHNNRI	11	Unmodified	_LVVLHLHNNRI_					0	0	0		ENST00000550851.5_1_12:71833860-71960711:+|nuORF;nc|ENSG00000139292|O75473-2|LGR5;ENSG00000139292|ENST00000266674|LGR5;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6;ENST00000506931.1_1_1:202245458-202249981:+|nuORF;ENST00000308543.3_1_1:202245458-202272411:+|nuORF	ENST00000550851.5_1_12:71833860-71960711:+|nuORF;nc|ENSG00000133067|Q9HBX8-2|LGR6	nc|ENSG00000133067|Q9HBX8-2|LGR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.6019592285156	3	443.270089	1326.78844	0.15743	6.9786E-05	0.76088	0.00033728	0.91832	0.00040706	443.27044331951987	21.992	0.92114	21.891	21.338	22.259	-0.10034					53	33	2	0	0	0	0.33287	1	2991	2991		2.8433	0.21205	1	276280			28212	3691;4226	16323	16324	34784	34784					0.13811540607980533
LVVNNAQVESI	11	Unmodified	_LVVNNAQVESI_					0	0	0			REV__ENSG00000160211|ENST00000393562|G6PD	REV__ENSG00000160211|ENST00000393562|G6PD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8307495117188	2	593.327328	1184.6401	0.67188	0.00039865	0.56656	0.00033616	1.2384	0.0007348	593.3278900351386	84.521	0.60991	84.602	84.303	84.912	0.080887					33	23	2	0	0	0	0.46475	1	22153	22153		2.7352	0	1	215300	+		28213	16887	16324	16325	34785	34785					0.05516764843605415
LVVQRQPPR	9	Unmodified	_LVVQRQPPR_					0	0	0			REV__NUP205|p.H1034Tfs*4|1|0.19|ENSG00000155561|chr7:135607274-135607274|T/-|frameshift_variant	REV__NUP205|p.H1034Tfs*4|1|0.19|ENSG00000155561|chr7:135607274-135607274|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8350830078125	2	546.835457	1091.65636	0.55485	0.00030341	-0.7802	-0.00042664	-0.22535	-0.00012323	546.8349986762166	24.037	0.85416	23.999	23.737	24.591	-0.038927					45	29	2	0	0	0	0.33018	1	3654	3654		4.3292	0	1	69286	+		28214	16702	16325	16326	34786	34786					0.11419935591038666
LVVQRQPPR	9	Unmodified	_LVVQRQPPR_					0	0	0			REV__NUP205|p.H1034Tfs*4|1|0.19|ENSG00000155561|chr7:135607274-135607274|T/-|frameshift_variant	REV__NUP205|p.H1034Tfs*4|1|0.19|ENSG00000155561|chr7:135607274-135607274|T/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	546.835457	1091.65636	0.31522	0.00017237	-0.6936	-0.00037928	-0.37838	-0.00020691	546.8349933195029	23.867	0.60355	23.867	23.616	24.22	0	-0.07666	-2.0361E-05	NaN	4.3292	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86983	+		28215	16702	16325	16326							0.11419935591038666
LVVQRQPPR	9	Unmodified	_LVVQRQPPR_					0	0	0			REV__NUP205|p.H1034Tfs*4|1|0.19|ENSG00000155561|chr7:135607274-135607274|T/-|frameshift_variant	REV__NUP205|p.H1034Tfs*4|1|0.19|ENSG00000155561|chr7:135607274-135607274|T/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	546.835457	1091.65636	0.55485	0.00030341	-0.7802	-0.00042664	-0.22535	-0.00012323	546.8349986762166	24.037	0.85416	23.999	23.737	24.591	-0.038927	0.054463	-0.00011507	NaN	4.3292	45	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69286	+		28216	16702	16325	16326							0.11419935591038666
LVVREGSVGRK	11	Unmodified	_LVVREGSVGRK_					0	0	0		ENST00000496230.5_1_1:155254296-155257077:+|nuORF;ENSG00000143630|ENST00000368358|HCN3	ENST00000496230.5_1_1:155254296-155257077:+|nuORF	ENST00000496230.5_1_1:155254296-155257077:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	400.58013916015625	3	400.578811	1198.7146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.14	1	103.14	102.64	103.64	-0.0011139								0	0	0	0.35034	1	27448	27448		9.7643	3.5299	1				28217	4536	16326	16327	34787	34787					0.12319572445653648
LVVVPLYPK	9	Unmodified	_LVVVPLYPK_					0	0	0		ENSG00000089876|ENST00000284690|DHX32	ENSG00000089876|ENST00000284690|DHX32	ENSG00000089876|ENST00000284690|DHX32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.3312377929688	2	514.331153	1026.64775	0.45961	0.00023639	0.015078	7.7549E-06	0.47469	0.00024415	514.3310933315217	57.247	0.59306	57.247	57.012	57.605	0					50	21	3	0	0	0	0.079066	1	13843	13843		42.095	9.9776	1	915080			28218	1367	16327	16328	34788	34788					0.13549568901839848
LVVVPLYPK	9	Unmodified	_LVVVPLYPK_					0	0	0		ENSG00000089876|ENST00000284690|DHX32	ENSG00000089876|ENST00000284690|DHX32	ENSG00000089876|ENST00000284690|DHX32	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	514.331153	1026.64775	0.25651	0.00013193	0.2536	0.00013043	0.51011	0.00026236	514.331175344611	57.138	0.52452	57.216	56.959	57.484	0.078674	0.00054384	2.3004E-07	NaN	42.095	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1106600			28219	1367	16327	16328							0.13549568901839848
LVVVPLYPK	9	Unmodified	_LVVVPLYPK_					0	0	0		ENSG00000089876|ENST00000284690|DHX32	ENSG00000089876|ENST00000284690|DHX32	ENSG00000089876|ENST00000284690|DHX32	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	514.331153	1026.64775	0.10914	5.6134E-05	0.47674	0.0002452	0.58588	0.00030134	514.3313368135305	57.203	0.60883	57.184	56.944	57.553	-0.018799	-0.03158	0.00022977	NaN	42.095	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	845400			28220	1367	16327	16328							0.13549568901839848
LVWCIAII	8	Unmodified	_LVWCIAII_					0	0	0			REV__ENSG00000128271|ENST00000337539|ADORA2A	REV__ENSG00000128271|ENST00000337539|ADORA2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.77740478515625	2	465.777699	929.540846	0.1424	6.6325E-05	-0.76916	-0.00035826	-0.62676	-0.00029193	465.77721853201456	75.013	1.4501	75.013	74.507	75.957	0					99	51	3	0	0	0	0.41716	1	19239	19239		17.087	17.087	1	592450	+		28221	15366	16328	16329	34789	34789					0.07325695415806877
LVWCIAII	8	Unmodified	_LVWCIAII_					0	0	0			REV__ENSG00000128271|ENST00000337539|ADORA2A	REV__ENSG00000128271|ENST00000337539|ADORA2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7605285644531	2	465.777699	929.540846	0.1424	6.6325E-05	-0.76916	-0.00035826	-0.62676	-0.00029193	465.77721853201456	75.013	1.4501	75.013	74.507	75.957	0					99	51	3	0	0	0	0.33618	1	19229	19229		11.114	11.114	1	592450	+		28222	15366	16328	16329	34790	34790					0.07325695415806877
LVWCIAII	8	Unmodified	_LVWCIAII_					0	0	0			REV__ENSG00000128271|ENST00000337539|ADORA2A	REV__ENSG00000128271|ENST00000337539|ADORA2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7607727050781	2	465.777699	929.540846	0.046076	2.1461E-05	-0.56154	-0.00026155	-0.51546	-0.00024009	465.7772819642401	74.965	1.3189	75.017	74.488	75.807	0.052361					99	47	3	0	0	0	0.29242	1	19206	19206		17.087	17.087	1	518200	+		28223	15366	16328	16329	34791	34791					0.07325695415806877
LVWCIAII	8	Unmodified	_LVWCIAII_					0	0	0			REV__ENSG00000128271|ENST00000337539|ADORA2A	REV__ENSG00000128271|ENST00000337539|ADORA2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.775146484375	2	465.777699	929.540846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.964	1	48.996	48.496	49.496	0.032043								0	0	0	0.27695	1	11236	11236		32.454	8.2437	1		+		28224	15366	16328	16329	34792	34792					0.07325695415806877
LVWCIAII	8	Unmodified	_LVWCIAII_					0	0	0			REV__ENSG00000128271|ENST00000337539|ADORA2A	REV__ENSG00000128271|ENST00000337539|ADORA2A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	465.777699	929.540846	0.44235	0.00020604	-1.112	-0.00051793	-0.66961	-0.00031189	465.77712064965795	74.97	1.3463	74.938	74.557	75.904	-0.031487	-0.051034	-0.00025491	NaN	17.087	88	49	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	566710	+		28225	15366	16328	16329							0.07325695415806877
LVWEEQLLY	9	Unmodified	_LVWEEQLLY_					0	0	0			REV__ENSG00000106479|ENST00000223210|ZNF862	REV__ENSG00000106479|ENST00000223210|ZNF862	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.8165283203125	2	596.816064	1191.61758	0.18518	0.00011052	0.28503	0.00017011	0.47022	0.00028063	596.8164218162312	27.988	1.3533	27.984	27.545	28.898	-0.0042572					179	47	5	0	0	0	0.33276	1	5058	5058		3.9444	0.3479	1	6887700	+		28226	14524	16329	16330	34793	34793					0.02943165446004059
LVWEETKL	8	Unmodified	_LVWEETKL_					0	0	0			REV__ENST00000468360.5_1_21:46698079-46707786:-|nuORF	REV__ENST00000468360.5_1_21:46698079-46707786:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2951965332031	2	509.2844	1016.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.077	1	30.105	29.605	30.605	0.027946								0	0	0	0.35251	1	5461	5461		13.508	0.97634	1		+		28227	18475	16330	16331	34794	34794					0.04663224728756177
LVWFELLV	8	Unmodified	_LVWFELLV_					0	0	0		ENST00000406189.3_1_18:48702442-48702544:-|nuORF	ENST00000406189.3_1_18:48702442-48702544:-|nuORF	ENST00000406189.3_1_18:48702442-48702544:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.80023193359375	2	509.802229	1017.5899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.994	1	61.985	61.485	62.485	-0.0085526								0	0	0	0.26566	1	15258	15258		34.187	2.919	1				28228	10220	16331	16332	34795	34795					0.08181306976416636
LVWHLQYR	8	Unmodified	_LVWHLQYR_					0	0	0		ST14|p.G638Afs*124|1|0.24|ENSG00000149418|chr11:130200054-130200054|G/-|frameshift_variant;ENSG00000149418|ENST00000278742|ST14	ST14|p.G638Afs*124|1|0.24|ENSG00000149418|chr11:130200054-130200054|G/-|frameshift_variant	ST14|p.G638Afs*124|1|0.24|ENSG00000149418|chr11:130200054-130200054|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3133544921875	2	557.811451	1113.60835	0.21715	0.00012113	3.6559	0.0020393	3.8731	0.0021605	558.3145662665191	24.18	0.7437	24.141	23.793	24.537	-0.038927					50	25	3	0	0	0	0.34434	1	3670	3670		0.79363	0	1	92193			28229	23381	16332	16333	34796	34796					0.05608861670998522
LVWIAWIL	8	Unmodified	_LVWIAWIL_					0	0	0			REV__nc|ENSG00000159398|Q6NT32-2|CES5A	REV__nc|ENSG00000159398|Q6NT32-2|CES5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.76312255859375	2	507.312764	1012.61097	0.22286	0.00011306	-1.6165	-0.00082005	-1.3936	-0.000707	507.3123874221745	61.908	0.66891	61.908	61.597	62.266	0					52	24	3	0	0	0	0.33618	1	15328	15328		17.087	2.2483	1	310580	+		28230	16850	16333	16334	34797	34797					0.10517317075937171
LVWIAWIL	8	Unmodified	_LVWIAWIL_					0	0	0			REV__nc|ENSG00000159398|Q6NT32-2|CES5A	REV__nc|ENSG00000159398|Q6NT32-2|CES5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.7632141113281	2	507.312764	1012.61097	0.01209	6.1336E-06	-1.3604	-0.00069014	-1.3483	-0.000684	507.31242489840724	61.86	0.6366	61.851	61.582	62.219	-0.0085526					52	22	3	0	0	0	0.33618	1	15307	15307		17.087	2.2483	1	340400	+		28231	16850	16333	16334	34798	34798					0.10517317075937171
LVWIPHILQ	9	Unmodified	_LVWIPHILQ_					0	0	0			REV__ENST00000600997.5_1_19:18702792-18702987:+|nuORF	REV__ENST00000600997.5_1_19:18702792-18702987:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.8016357421875	2	559.839677	1117.6648	0.41113	0.00023017	-0.53563	-0.00029987	-0.1245	-6.97E-05	559.8393819948756	37.192	0.221	37.285	37.142	37.363	0.093014					10	7	2	0	0	0	0.25417	1	7632	7632		8.5933	3.8373	1	98915	+		28232	22630	16334	16335	34799	34799					0.11067489507649952
LVWKRRILFFV	11	Unmodified	_LVWKRRILFFV_					0	0	0		ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.9784240722656	3	492.978247	1475.91291	0.60601	0.00029875	0.028286	1.3945E-05	0.6343	0.0003127	493.3124439470071	44.7	1.0925	44.7	44.408	45.501	0					116	39	4	0	0	0	0.48173	1	9964	9964		0.50596	0.051438	1	1072800			28233	4208	16335	16336	34800	34800					0.193990380952755
LVWKRRILFFV	11	Unmodified	_LVWKRRILFFV_					0	0	0		ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	492.978247	1475.91291	0.54056	0.00026649	-0.17685	-8.7184E-05	0.36371	0.0001793	492.9780826453562	44.5	1.4555	44.569	44.147	45.602	0.068569	-0.071326	-0.00017004	NaN	0.50596	137	52	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1230500			28234	4208	16335	16336							0.193990380952755
LVWKRRILFFV	11	Unmodified	_LVWKRRILFFV_					0	0	0		ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	492.978247	1475.91291	0.48172	0.00023748	-0.059275	-2.9221E-05	0.42244	0.00020825	492.9780832152936	44.577	1.3755	44.652	44.229	45.605	0.075047	0.011949	3.848E-06	NaN	0.50596	125	50	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1042800			28235	4208	16335	16336							0.193990380952755
LVWLPLMHRL	10	Unmodified	_LVWLPLMHRL_					0	0	0		ENST00000493386.5_1_2:25799670-25819155:-|nuORF;nc|ENSG00000138101|O60941-6|DTNB;nc|ENSG00000138101|O60941-3|DTNB;nc|ENSG00000138101|O60941-5|DTNB;nc|ENSG00000138101|O60941-2|DTNB;nc|ENSG00000138101|O60941-4|DTNB;nc|ENSG00000138101|O60941-7|DTNB;ENSG00000138101|ENST00000406818|DTNB	ENST00000493386.5_1_2:25799670-25819155:-|nuORF	ENST00000493386.5_1_2:25799670-25819155:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.9046936035156	3	426.589883	1276.74782	0.05064	2.1602E-05	1.8101	0.00077218	1.8608	0.00079378	426.59049070836653	36.561	0.51776	36.561	36.358	36.875	0					37	17	3	0	0	0	0.3179	1	7418	7418		5.7834	3.6995	1	213310			28236	4117	16336	16337	34801	34801					0.12051482964011484
LVWRPSLGAF	10	Unmodified	_LVWRPSLGAF_					0	0	0		ENSG00000020181|ENST00000412232|ADGRA2;nc|ENSG00000020181|Q96PE1-2|ADGRA2	ENSG00000020181|ENST00000412232|ADGRA2	ENSG00000020181|ENST00000412232|ADGRA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.3270874023438	2	573.326934	1144.63931	0.25209	0.00014453	-0.099669	-5.7143E-05	0.15242	8.7385E-05	573.3271033469795	58.116	0.67164	58.116	57.828	58.5	0					55	23	3	0	0	0	0.30586	1	14093	14093		19.257	2.3147	1	923750			28237	503	16337	16338	34802	34802					0.07278014985217851
LVWRWRPE	8	Unmodified	_LVWRWRPE_					0	0	0		ENST00000469111.5_2_3:127298970-127309443:-|nuORF;ENST00000355552.7_2_3:127295839-127309587:-|nuORF	ENST00000469111.5_2_3:127298970-127309443:-|nuORF	ENST00000469111.5_2_3:127298970-127309443:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.308837890625	2	571.3169	1140.61925	0.063424	3.6235E-05	4.4216	0.0025261	4.485	0.0025624	571.3193882976559	27.37	0.29238	27.37	27.237	27.53	0					13	9	2	0	0	0	0.41097	1	4669	4669		18.135	2.3964	1	64579			28238	9609	16338	16339	34803	34803					0.05456264045255921
LVWVGLNVV	9	Unmodified	_LVWVGLNVV_					0	0	0			REV__ENSG00000139874|ENST00000267377|SSTR1	REV__ENSG00000139874|ENST00000267377|SSTR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.78521728515625	2	499.805303	997.596052	0.39084	0.00019535	1.0494	0.00052452	1.4403	0.00071986	499.80574356681655	49.796	0.51871	49.796	49.434	49.953	0					40	18	3	0	0	0	0.21905	1	11535	11535		23.148	6.0355	1	680020	+		28239	16010	16339	16340	34804	34804					0.09715825207933904
LVWYVSPQP	9	Unmodified	_LVWYVSPQP_					0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7925415039062	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.85	1	113.83	113.33	114.33	-0.017303								0	0	0	0.25631	1	29581	29581		4.3292	0	1		+		28240	16585	16340	16341	34805	34805					0.0299493096565584
LVYESVLVMSM	11	Unmodified	_LVYESVLVMSM_					0	0	0			REV__chr2:69789926-69790680|323|10.1|0.0|19.95|-|1|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|23	REV__chr2:69789926-69790680|323|10.1|0.0|19.95|-|1|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|23	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2067565917969	3	424.218904	1269.63488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.89	1	23.89	23.39	24.39	0								0	0	0	0.35343	1	3584	3584		7.4771	0.84669	1		+		28241	13191	16341	16342	34806	34806					0.010850016651374972
LVYFIMLII	9	Unmodified	_LVYFIMLII_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|98|2|sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|98|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8211059570312	2	562.843039	1123.67153	0.38233	0.00021519	-2.0075	-0.0011299	-1.6252	-0.00091472	562.8418378673248	58.374	0.46356	58.374	58.1	58.564	0					23	15	2	0	0	0	0.19319	1	14102	14102		28.173	0	1	407380	+		28242	22757	16342	16343	34807	34807					0.11463666344025114
LVYFKQAL	8	Unmodified	_LVYFKQAL_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.27203369140625	2	491.292028	980.569503	0.92384	0.00045387	3.4594	0.0016996	4.3833	0.0021535	491.29354626366745	33.854	0.53073	33.92	33.704	34.235	0.06636					28	18	2	0	0	0	0.30503	1	6631	6631		30.225	6.0149	1	116970	+		28243	15247	16343	16344	34808	34808					0.07844136316623462
LVYFSLSLM	9	Unmodified	_LVYFSLSLM_					0	0	0		ENST00000304056.8_1_7:32919423-32919537:-|nuORF	ENST00000304056.8_1_7:32919423-32919537:-|nuORF	ENST00000304056.8_1_7:32919423-32919537:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7295532226562	2	536.791004	1071.56745	0.64237	0.00034482	1.7305	0.00092893	2.3729	0.0012737	536.7917060559316	59.408	0.28518	59.395	59.172	59.458	-0.013031					20	9	3	0	0	0	0.23783	1	14432	14432		7.9102	3.1541	1	540640			28244	9256	16344	16345	34809	34809					0.03453339516499909
LVYGMKVLL	9	Unmodified	_LVYGMKVLL_					0	0	0		ENST00000472621.1_1_12:49349539-49349999:-|nuORF;ENST00000545855.1_1_12:49334883-49349999:-|nuORF	ENST00000472621.1_1_12:49349539-49349999:-|nuORF	ENST00000472621.1_1_12:49349539-49349999:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.317138671875	2	518.317189	1034.61982	0.40032	0.0002075	0.024215	1.2551E-05	0.42454	0.00022005	518.3171293624647	76.325	3.1646	76.325	75.369	78.533	0					457	116	5	0	0	0	0.29662	1	19502	19502		9.3474	4.1168	1	8466300			28245	10896	16345	16346	34810	34810					0.10389922650119843
LVYGMKVLL	9	Unmodified	_LVYGMKVLL_					0	0	0		ENST00000472621.1_1_12:49349539-49349999:-|nuORF;ENST00000545855.1_1_12:49334883-49349999:-|nuORF	ENST00000472621.1_1_12:49349539-49349999:-|nuORF	ENST00000472621.1_1_12:49349539-49349999:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3171997070312	2	518.317189	1034.61982	0.25255	0.0001309	-0.10436	-5.4094E-05	0.14819	7.6809E-05	518.3170786111596	76.122	0.96995	76.175	75.219	76.189	0.053413					124	35	5	0	0	0	0.29662	1	19490	19490		9.3474	1.4373	1	5407200			28246	10896	16345	16346	34811	34811					0.10389922650119843
LVYGMKVLL	9	Unmodified	_LVYGMKVLL_					0	0	0		ENST00000472621.1_1_12:49349539-49349999:-|nuORF;ENST00000545855.1_1_12:49334883-49349999:-|nuORF	ENST00000472621.1_1_12:49349539-49349999:-|nuORF	ENST00000472621.1_1_12:49349539-49349999:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	518.317189	1034.61982	0.25255	0.0001309	-0.10436	-5.4094E-05	0.14819	7.6809E-05	518.3170786111596	76.122	0.96995	76.175	75.219	76.189	0.053413	-0.071077	-6.6296E-05	NaN	9.3474	124	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5407200			28247	10896	16345	16346							0.10389922650119843
LVYGTAASFL	10	Unmodified	_LVYGTAASFL_					0	0	0		ENST00000557880.2_1_15:80237128-80237170:+|nuORF	ENST00000557880.2_1_15:80237128-80237170:+|nuORF	ENST00000557880.2_1_15:80237128-80237170:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.794677734375	2	521.2844	1040.55425	0.77184	0.00040235	-0.55565	-0.00028965	0.2162	0.0001127	521.2843461213388	77.267	3.6169	77.236	76.754	80.371	-0.031334					387	136	5	0	0	0	0.34795	1	19813	19813		13.042	0.80181	1	22754000			28248	11869	16346	16347	34812	34812					0.035592247287468126
LVYIAPMHL	9	Unmodified	_LVYIAPMHL_					0	0	0		ENST00000452150.6_1_6:131161525-131161600:-|nuORF	ENST00000452150.6_1_6:131161525-131161600:-|nuORF	ENST00000452150.6_1_6:131161525-131161600:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7987060546875	2	528.799163	1055.58377	0.059416	3.1419E-05	-0.99183	-0.00052448	-0.93241	-0.00049306	528.7986261859444	12.725	0.32806	12.658	12.491	12.819	-0.067495					15	9	2	0	0	0	0.34374	1	237	237		2.3027	0	1	85288			28249	10653	16347	16348	34813	34813					0.0582046547324353
LVYIAPMHL	9	Unmodified	_LVYIAPMHL_					0	0	0		ENST00000452150.6_1_6:131161525-131161600:-|nuORF	ENST00000452150.6_1_6:131161525-131161600:-|nuORF	ENST00000452150.6_1_6:131161525-131161600:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	528.799163	1055.58377	0.15494	8.1935E-05	-0.81925	-0.00043322	-0.6643	-0.00035128	528.7986949838	12.692	0.57017	12.692	12.303	12.874	0	0.017251	9.3866E-05	NaN	2.3027	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97677			28250	10653	16347	16348							0.0582046547324353
LVYIAPMHL	9	Unmodified	_LVYIAPMHL_					0	0	0		ENST00000452150.6_1_6:131161525-131161600:-|nuORF	ENST00000452150.6_1_6:131161525-131161600:-|nuORF	ENST00000452150.6_1_6:131161525-131161600:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.799163	1055.58377	0.059416	3.1419E-05	-0.99183	-0.00052448	-0.93241	-0.00049306	528.7986261859444	12.725	0.32806	12.658	12.491	12.819	-0.067495	-0.017251	-8.8656E-05	NaN	2.3027	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85288			28251	10653	16347	16348							0.0582046547324353
LVYLARAH	8	Unmodified	_LVYLARAH_					0	0	0			REV__ENSG00000105767|ENST00000222374|CADM4	REV__ENSG00000105767|ENST00000222374|CADM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2701416015625	2	471.779619	941.544686	-0.1788	-8.4356E-05	0.25342	0.00011956	0.074616	3.5203E-05	471.77960271994203	13.136	0.48299	13.068	12.905	13.388	-0.067496					28	16	2	0	0	0	0.34185	1	419	419		10.183	0.83596	1	103770	+		28252	14486	16348	16349	34814	34814					0.07157501233893981
LVYRRFLFVVF	11	Unmodified	_LVYRRFLFVVF_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1;chr7:123190613-123199848|339|11.15|0.66|4.08|-|ENST00000439260|SLC13A1,SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.9591064453125	3	486.958852	1457.85473	0.14008	6.8214E-05	0.14014	6.824E-05	0.28022	0.00013645	486.9589688168156	93.789	3.2777	93.789	92.641	95.919	0					884	291	6	0	0	0	0.48173	2	24750	24750;25204		0.50596	0.50596	1	3798700			28253	1188	16349	16350	34815;34816	34815					0.14411356450000312
LVYRRFLFVVF	11	Unmodified	_LVYRRFLFVVF_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1;chr7:123190613-123199848|339|11.15|0.66|4.08|-|ENST00000439260|SLC13A1,SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.9591064453125	3	486.958852	1457.85473	0.21451	0.00010446	0.1096	5.3371E-05	0.32411	0.00015783	486.9589824545252	93.428	4.5574	93.515	92.623	97.181	0.08667					1047	403	4	0	0	0	0.47545	1	24815	24815		1.3296	1.3296	1	5654000			28254	1188	16349	16350	34817	34817					0.14411356450000312
LVYRRFLFVVF	11	Unmodified	_LVYRRFLFVVF_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1;chr7:123190613-123199848|339|11.15|0.66|4.08|-|ENST00000439260|SLC13A1,SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.95892333984375	3	486.958852	1457.85473	0.41907	0.00020407	-0.063795	-3.1066E-05	0.35528	0.00017301	486.9588875546509	93.387	3.8528	93.386	92.677	96.53	-0.00051117					1071	343	5	0	0	0	0.48173	1	24740	24740		0.50596	0.50596	1	4732600			28255	1188	16349	16350	34818	34818					0.14411356450000312
LVYSFLYK	8	Unmodified	_LVYSFLYK_					0	0	0		ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	ENSG00000129354|ENST00000250244|AP1M2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.3054809570312	2	516.791861	1031.56917	0.68379	0.00035338	-2.4723	-0.0012777	-1.7885	-0.00092428	516.7904182699209	60.68	0.42772	60.671	60.461	60.888	-0.0094566					26	15	2	0	0	0	0.33245	1	14794	14794		13.508	4.1248	1	437650			28256	3423	16350	16351	34819	34819					0.05464716596770813
LVYSSKNKF	9	Unmodified	_LVYSSKNKF_					0	0	0		nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B	nc|ENSG00000169994|Q6PIF6-2|MYO7B	nc|ENSG00000169994|Q6PIF6-2|MYO7B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3108520507812	2	543.303124	1084.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.977	1	75.029	74.529	75.529	0.052361								0	0	0	0.20238	1	19232	19232		21.747	1.293	1				28257	6413	16351	16352	34820	34820					0.05278315994382865
LVYSTCTLSK	10	Unmodified	_LVYSTCTLSK_					0	0	0		ENSG00000178694|ENST00000314622|NSUN3	ENSG00000178694|ENST00000314622|NSUN3	ENSG00000178694|ENST00000314622|NSUN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7925415039062	2	557.794275	1113.574	0.24296	0.00013552	-1.67	-0.0009315	-1.427	-0.00079598	557.7924217526315	69.439	1.0632	69.505	69.012	70.075	0.06604					86	37	3	0	0	0	0.18562	2	17538	17532;17538		34.402	4.5611	1	769250			28258	7069	16352	16353	34821;34822	34822					0.021752326772229935
LVYTPDYDSF	10	Unmodified	_LVYTPDYDSF_					0	0	0		ENSG00000151376|ENST00000524826|ME3	ENSG00000151376|ENST00000524826|ME3	ENSG00000151376|ENST00000524826|ME3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.20367431640625	3	407.188767	1218.54447	-0.15235	-6.2033E-05	0.17096	6.9613E-05	0.018615	7.58E-06	407.18947222987833	17.868	0.72472	17.807	17.472	18.197	-0.060429					37	25	3	0	0	0	0.39536	1	1792	1792		2.086	0	1	40826			28259	4959	16353	16354	34823	34823					-0.056060080672978074
LVYWRLRHCL	10	Unmodified	_LVYWRLRHCL_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.9224853515625	3	453.588653	1357.74413	-0.17496	-7.9358E-05	-0.58433	-0.00026505	-0.75929	-0.00034441	453.5883407819793	13.395	0.61849	13.395	13.254	13.872	0					45	21	3	0	0	0	0.40943	1	422	422		1.7423	0.28716	1	149670			28260	1983	16354	16355	34824	34824					0.07956813190162393
LVYWRLRHCL	10	Unmodified	_LVYWRLRHCL_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	453.588653	1357.74413	-0.17496	-7.9358E-05	-0.58433	-0.00026505	-0.75929	-0.00034441	453.5883407819793	13.395	0.61849	13.395	13.254	13.872	0	-0.10234	-0.00029241	NaN	1.7423	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149670			28261	1983	16354	16355							0.07956813190162393
LVYWRLRHCL	10	Unmodified	_LVYWRLRHCL_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	453.588653	1357.74413	-0.18966	-8.6028E-05	-0.38824	-0.0001761	-0.5779	-0.00026213	453.5884224276687	13.561	0.65958	13.462	13.249	13.908	-0.099291	-0.035626	-2.5573E-05	NaN	1.7423	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115710			28262	1983	16354	16355							0.07956813190162393
LVYWRLRHCL	10	Unmodified	_LVYWRLRHCL_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	453.588653	1357.74413	-0.20348	-9.2298E-05	-0.25227	-0.00011443	-0.45576	-0.00020673	453.58851540939094	13.701	0.55972	13.635	13.417	13.977	-0.066068	0.13796	0.00015945	NaN	1.7423	49	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103590			28263	1983	16354	16355							0.07956813190162393
LVYWVGYL	8	Unmodified	_LVYWVGYL_					0	0	0		ENSG00000163285|ENST00000295452|GABRG1;ENSG00000182256|ENST00000615808|GABRG3	ENSG00000163285|ENST00000295452|GABRG1	ENSG00000163285|ENST00000295452|GABRG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.31353759765625	2	506.778754	1011.54295	0.37133	0.00018818	-2.9902	-0.0015154	-2.6188	-0.0013272	506.77721221465833	57.594	0.45203	57.594	57.376	57.828	0					20	15	2	0	0	0	0.33618	1	13880	13880		17.087	4.555	1	413840			28264	5660	16355	16356	34825	34825					0.03764447425282924
LVYYAKSSKLI	11	Unmodified	_LVYYAKSSKLI_					0	0	0			REV__ENST00000481600.5_1_10:127417653-127452038:+|nuORF	REV__ENST00000481600.5_1_10:127417653-127452038:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.8798828125	2	642.881739	1283.74892	0.80659	0.00051854	-2.3865	-0.0015343	-1.5799	-0.0010157	642.8794448090754	50.536	0.54964	50.536	50.296	50.846	0					34	19	3	0	0	0	0.40826	1	11746	11746		10.151	0.6066	1	722530	+		28265	14574	16356	16357	34826	34826					0.11839975813904857
LWAATLLTL	9	Unmodified	_LWAATLLTL_					0	0	0			REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.29071044921875	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.292	1	78.292	77.792	78.792	0								0	0	0	0.21009	1	20250	20250		19.257	0	1		+		28266	17464	16357	16358	34827	34827					0.09544405488099983
LWAATLLTL	9	Unmodified	_LWAATLLTL_					0	0	0			REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2908935546875	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.436	1	78.436	77.936	78.936	0								0	0	0	0.21009	1	20293	20293		19.257	1.1106	1		+		28267	17464	16357	16358	34828	34828					0.09544405488099983
LWAATLLTL	9	Unmodified	_LWAATLLTL_					0	0	0			REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2908630371094	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.798	1	78.798	78.298	79.298	0								0	0	0	0.19534	1	20404	20404		24.021	5.8742	1		+		28268	17464	16357	16358	34829	34829					0.09544405488099983
LWAATLLTL	9	Unmodified	_LWAATLLTL_					0	0	0			REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2908020019531	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.945	1	78.945	78.445	79.445	0								0	0	0	0.21009	1	20449	20449		19.257	1.1106	1		+		28269	17464	16357	16358	34830	34830					0.09544405488099983
LWAATLLTL	9	Unmodified	_LWAATLLTL_					0	0	0			REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2909240722656	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.101	1	79.101	78.601	79.601	0								0	0	0	0.13597	1	20497	20497		37.974	3.8716	1		+		28270	17464	16357	16358	34831	34831					0.09544405488099983
LWAATLLTL	9	Unmodified	_LWAATLLTL_					0	0	0			REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.29071044921875	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.261	1	79.261	78.761	79.761	0								0	0	0	0.21009	1	20545	20545		19.257	0.88389	1		+		28271	17464	16357	16358	34832	34832					0.09544405488099983
LWAATLLTL	9	Unmodified	_LWAATLLTL_					0	0	0			REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.291015625	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.411	1	79.411	78.911	79.911	0								0	0	0	0.21353	1	20591	20591		18.146	3.3081	1		+		28272	17464	16357	16358	34833	34833					0.09544405488099983
LWAATLLTL	9	Unmodified	_LWAATLLTL_					0	0	0			REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2909240722656	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.718	1	79.718	79.218	80.218	0								0	0	0	0.21353	1	20685	20685		18.146	3.3081	1		+		28273	17464	16357	16358	34834	34834					0.09544405488099983
LWAATLLTL	9	Unmodified	_LWAATLLTL_					0	0	0			REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2908020019531	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.987	1	78.045	77.545	78.545	0.058151								0	0	0	0.21353	1	20147	20147		18.146	3.3081	1		+		28274	17464	16357	16358	34835	34835					0.09544405488099983
LWAATLLTL	9	Unmodified	_LWAATLLTL_					0	0	0			REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.290771484375	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.126	1	78.185	77.685	78.685	0.058151								0	0	0	0.22666	1	20188	20188		13.906	0.86358	1		+		28275	17464	16357	16358	34836	34836					0.09544405488099983
LWAATLLTL	9	Unmodified	_LWAATLLTL_					0	0	0			REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2906494140625	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.272	1	78.331	77.831	78.831	0.058151								0	0	0	0.22666	1	20233	20233		13.906	0.86358	1		+		28276	17464	16357	16358	34837	34837					0.09544405488099983
LWAATLLTL	9	Unmodified	_LWAATLLTL_					0	0	0			REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.291015625	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.442	1	78.5	78	79	0.058151								0	0	0	0.21009	1	20285	20285		19.257	1.1106	1		+		28277	17464	16357	16358	34838	34838					0.09544405488099983
LWAATLLTL	9	Unmodified	_LWAATLLTL_					0	0	0			REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.29083251953125	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.599	1	78.657	78.157	79.157	0.058151								0	0	0	0.16757	1	20333	20333		30.637	6.616	1		+		28278	17464	16357	16358	34839	34839					0.09544405488099983
LWAATLLTL	9	Unmodified	_LWAATLLTL_					0	0	0			REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	REV__ENSG00000168502.17,MTCL1,chr18,+,I9.1,8784844,8785689|115|9.46|9|intron	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2908630371094	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.753	1	78.811	78.311	79.311	0.058151								0	0	0	0.19534	1	20380	20380		24.021	3.5669	1		+		28279	17464	16357	16358	34840	34840					0.09544405488099983
LWAVRKSL	8	Unmodified	_LWAVRKSL_					0	0	0		ENST00000526094.5_1_17:42295651-42295777:-|nuORF	ENST00000526094.5_1_17:42295651-42295777:-|nuORF	ENST00000526094.5_1_17:42295651-42295777:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7919921875	2	486.803094	971.591636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.635	1	81.704	81.204	82.204	0.068993								0	0	0	0.36961	1	21264	21264		5.7604	0	1				28280	11546	16358	16359	34841	34841					0.10470360785029698
LWDGHYKR	8	Unmodified	_LWDGHYKR_					0	0	0			REV__ENST00000468202.1_1_12:48448823-48449003:-|nuORF	REV__ENST00000468202.1_1_12:48448823-48449003:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.77734375	2	537.777608	1073.54066	0.078674	4.2309E-05	-0.25959	-0.0001396	-0.18091	-9.7292E-05	537.77748868365	14.31	0.77365	14.205	14.049	14.823	-0.10466					61	26	3	0	0	0	0.45307	1	728	728		4.756	0.42677	1	931240	+		28281	21318	16359	16360	34842	34842					0.006834117401695039
LWEKTEEK	8	Unmodified	_LWEKTEEK_					0	0	0			REV__nc|ENSG00000160746|Q9NW15-4|ANO10	REV__nc|ENSG00000160746|Q9NW15-4|ANO10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.85546875	2	531.776939	1061.53933	0.42466	0.00022582	-1.9471	-0.0010354	-1.5225	-0.00080962	531.775835008334	26.939	0.53337	26.939	26.558	27.091	0					27	18	2	0	0	0	0.34378	1	4409	4409		1.6526	0.17072	1	56961	+		28282	16915	16360	16361	34843	34843					0.011017328607522359
LWELVLEQ	8	Unmodified	_LWELVLEQ_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;ENST00000574202.1_1_17:3856610-3867516:-|nuORF	nc|ENSG00000074370|Q93084-4|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.28466796875	2	515.2844	1028.55425	0.20246	0.00010433	0.67131	0.00034592	0.87377	0.00045024	515.2846894928383	18.228	0.57506	18.228	17.96	18.535	0					42	19	3	0	0	0	0.44569	1	1880	1880		7.2892	0	1	209910			28283	1020	16361	16362	34844	34844					0.04111224728740126
LWETEKIC	8	Unmodified	_LWETEKIC_					0	0	0		nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;ENSG00000176438|ENST00000682763|SYNE3;nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	nc|ENSG00000176438|Q6ZMZ3-2|SYNE3	nc|ENSG00000176438|Q6ZMZ3-2|SYNE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.25433349609375	2	511.254785	1020.49502	0.36017	0.00018414	-1.1731	-0.00059976	-0.81293	-0.00041562	511.25406655368585	71.552	1.2014	71.609	71.43	72.632	0.056572					75	43	2	0	0	0	0.43302	1	18312	18312		11.64	0.81637	1	331440			28284	6929	16362	16363	34845	34845					-0.014409945570719174
LWETEKIC	8	Unmodified	_LWETEKIC_					0	0	0		nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;ENSG00000176438|ENST00000682763|SYNE3;nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	nc|ENSG00000176438|Q6ZMZ3-2|SYNE3	nc|ENSG00000176438|Q6ZMZ3-2|SYNE3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	511.254785	1020.49502	0.36235	0.00018525	-0.25313	-0.00012941	0.10922	5.584E-05	511.25407169610827	71.309	0.25304	71.309	71.209	71.462	0	-0.16073	0.00065603	NaN	11.64	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228590			28285	6929	16362	16363							-0.014409945570719174
LWETEKIC	8	Unmodified	_LWETEKIC_					0	0	0		nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;ENSG00000176438|ENST00000682763|SYNE3;nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	nc|ENSG00000176438|Q6ZMZ3-2|SYNE3	nc|ENSG00000176438|Q6ZMZ3-2|SYNE3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	511.254785	1020.49502	0.3411	0.00017439	-0.28889	-0.0001477	0.052208	2.6692E-05	511.25448154949237	71.519	0.17595	71.492	71.426	71.602	-0.027275	0.021764	0.00061946	NaN	11.64	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217410			28286	6929	16362	16363							-0.014409945570719174
LWFCLFVCL	9	Unmodified	_LWFCLFVCL_					0	0	0		ENST00000481559.6_1_5:152869375-153085697:+|nuORF	ENST00000481559.6_1_5:152869375-153085697:+|nuORF	ENST00000481559.6_1_5:152869375-153085697:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.721923828125	2	572.290117	1142.56568	0.26824	0.00015351	-1.8058	-0.0010334	-1.5375	-0.00087991	572.2893277257798	79.689	0.54035	79.689	79.495	80.035	0					24	20	2	0	0	0	0.24542	1	20655	20655		14.582	1.0738	1	77123			28287	11033	16363	16364	34846	34846					0.00010007226910602185
LWFCLFVCL	9	Unmodified	_LWFCLFVCL_					0	0	0		ENST00000481559.6_1_5:152869375-153085697:+|nuORF	ENST00000481559.6_1_5:152869375-153085697:+|nuORF	ENST00000481559.6_1_5:152869375-153085697:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.7916870117188	2	572.290117	1142.56568	0.30021	0.00017181	-0.67694	-0.00038741	-0.37673	-0.0002156	572.2895263591673	73.215	0.79355	73.186	72.873	73.667	-0.029297					38	28	2	0	0	0	0.21902	1	18637	18637		20.871	6.9652	1	133450			28288	11033	16363	16364	34847	34847					0.00010007226910602185
LWFRFRRP	8	Unmodified	_LWFRFRRP_					0	0	0			REV__ENST00000296581.10_2_4:147096871-147096937:+|nuORF	REV__ENST00000296581.10_2_4:147096871-147096937:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.34423828125	2	589.34071	1176.66687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.18	1	117.18	116.68	117.68	0								0	0	0	0.38004	1	30313	30313		0.69038	0.16561	1		+		28289	19798	16364	16365	34848	34848					0.08559963036123008
LWGRAQLR	8	Unmodified	_LWGRAQLR_					0	0	0		ENST00000379656.7_1_19:18112104-18119556:+|nuORF	ENST00000379656.7_1_19:18112104-18119556:+|nuORF	ENST00000379656.7_1_19:18112104-18119556:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.6723327636719	2	500.295968	998.577383	0.33681	0.0001685	-1.788	-0.00089455	-1.4512	-0.00072604	500.2950361941685	17.082	0.58165	17.082	16.895	17.477	0					22	20	2	0	0	0	0.34408	1	1536	1536		2.3027	0.4585	1	43881			28290	9973	16365	16366	34849	34849					0.07803708356732386
LWGSPDKYP	9	Unmodified	_LWGSPDKYP_					0	0	0		nc|ENSG00000076555|O00763-3|ACACB;ENSG00000076555|ENST00000338432|ACACB;nc|ENSG00000076555|O00763-2|ACACB	nc|ENSG00000076555|O00763-3|ACACB	nc|ENSG00000076555|O00763-3|ACACB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.7659912109375	2	531.766374	1061.5182	0.35745	0.00019008	-0.46131	-0.00024531	-0.10386	-5.523E-05	531.7657517028711	26.212	0.68253	26.212	25.875	26.558	0					43	21	3	0	0	0	0.31763	1	4356	4356		6.2058	1.4498	1	87083			28291	1065	16366	16367	34850	34850					-0.010102324481067626
LWHQWEHIGP	10	Unmodified	_LWHQWEHIGP_					0	0	0			REV__ENSG00000180919|ENST00000316529|OR56B4	REV__ENSG00000180919|ENST00000316529|OR56B4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.88226318359375	3	434.884123	1301.63054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.248	1	23.248	22.748	23.748	0								0	0	0	0.38065	1	3390	3390		1.9064	0.57673	1		+		28292	18125	16367	16368	34851	34851					-0.008209586512521128
LWISFLYG	8	Unmodified	_LWISFLYG_					0	0	0		nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3;nc|ENSG00000158296|Q8WWT9-4|SLC13A3;nc|ENSG00000158296|Q8WWT9-5|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2955017089844	2	499.770929	997.527304	0.35847	0.00017915	2.1395	0.0010692	2.4979	0.0012484	499.7720449018895	17.4	0.48125	17.34	17.079	17.56	-0.060431					25	16	2	0	0	0	0.34408	1	1540	1540		2.3027	1.778	1	29209			28293	5351	16368	16369	34852	34852					0.028441609082278774
LWKFIKPKQ	9	Unmodified	_LWKFIKPKQ_					0	0	0		ENSG00000171448|ENST00000373656|ZBTB26	ENSG00000171448|ENST00000373656|ZBTB26	ENSG00000171448|ENST00000373656|ZBTB26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.790771484375	2	594.368601	1186.72265	0.41912	0.00024911	-0.32027	-0.00019036	0.098852	5.8755E-05	594.3682488157635	38.042	0.67555	38.042	37.895	38.571	0					53	23	3	0	0	0	0.26145	1	7902	7902		2.0598	0	1	268620			28294	6541	16369	16370	34853	34853					0.1367575143308386
LWKLRCFF	8	Unmodified	_LWKLRCFF_					0	0	0		ENSG00000166069|ENST00000319669|TMCO5A	ENSG00000166069|ENST00000319669|TMCO5A	ENSG00000166069|ENST00000319669|TMCO5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.81103515625	2	556.807322	1111.60009	0.34835	0.00019396	1.3458	0.00074933	1.6941	0.0009433	557.3083518332257	72.183	1.1825	72.155	71.477	72.659	-0.027267					130	41	5	0	0	0	0.38703	1	18420	18420		20.871	6.2895	1	729440			28295	6028	16370	16371	34854	34854					0.04875591430027271
LWKRKVQRPRL	11	Unmodified	_LWKRKVQRPRL_					0	0	0			REV__ENST00000446176.6_1_9:132650909-132651179:-|nuORF	REV__ENST00000446176.6_1_9:132650909-132651179:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2257080078125	3	493.984283	1478.93102	0.49723	0.00024563	1.1471	0.00056665	1.6443	0.00081227	494.3201094448083	41.838	0.4173	41.928	41.853	42.271	0.090252					20	14	2	0	0	0	0.33336	1	9090	9090		1.1098	0.74308	1	746370	+		28296	21078	16371	16372	34855	34855					0.21071173070026816
LWKWMRRF	8	Unmodified	_LWKWMRRF_					0	0	0			REV__ENSG00000205922|ENST00000382349|ONECUT3	REV__ENSG00000205922|ENST00000382349|ONECUT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.8799743652344	3	408.227056	1221.65934	-0.012929	-5.2781E-06	-4.1046	-0.0016756	-4.1175	-0.0016809	408.55990599173174	26.045	0.3832	26.023	25.945	26.328	-0.022236					30	13	3	0	0	0	0.34419	1	4283	4283		0.45834	0	1	67443	+		28297	19009	16372	16373	34856	34856					0.05737487444184808
LWLAWSWWSS	10	Unmodified	_LWLAWSWWSS_					0	0	0		ENST00000413439.5_1_19:55224404-55224921:+|nuORF	ENST00000413439.5_1_19:55224404-55224921:+|nuORF	ENST00000413439.5_1_19:55224404-55224921:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.88226318359375	3	441.216991	1320.62914	-0.18427	-8.1305E-05	-0.75045	-0.00033111	-0.93472	-0.00041242	441.2167364678889	14.052	0.29258	13.986	13.889	14.181	-0.066068					14	9	2	0	0	0	0.32165	1	613	613		0.69767	0	1	101220			28298	10289	16373	16374	34857	34857					-0.01834592740010521
LWLFESLVT	9	Unmodified	_LWLFESLVT_					0	0	0			REV__ENSG00000115084|ENST00000245680|SLC35F5	REV__ENSG00000115084|ENST00000245680|SLC35F5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3086547851562	2	554.307875	1106.6012	0.2288	0.00012683	0.2852	0.00015809	0.51401	0.00028492	554.3083077413015	31.367	0.48916	31.408	31.07	31.559	0.040989					54	17	5	0	0	0	0.30623	1	5882	5882		7.9102	0	1	353990	+		28299	14860	16374	16375	34858	34858					0.05216084279913957
LWLLTLHFVL	10	Unmodified	_LWLLTLHFVL_					0	0	0			REV__ENST00000366639.8_1_1:231700680-231700800:+|nuORF	REV__ENST00000366639.8_1_1:231700680-231700800:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.2938537597656	3	418.925148	1253.75362	0.2897	0.00012136	4.4472	0.001863	4.7369	0.0019844	418.9255457308521	91.731	0.93606	91.732	91.452	92.388	0.00047302					99	63	2	0	0	0	0.3198	1	24387	24387		2.086	0	1	692430	+		28300	20296	16375	16376	34859	34859					0.13688904747300512
LWLSCHLLL	9	Unmodified	_LWLSCHLLL_					0	0	0			REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.312255859375	2	549.312438	1096.61032	0.27544	0.0001513	0.13893	7.6317E-05	0.41437	0.00022762	549.3124545164163	16.417	0.79171	16.417	15.867	16.659	0					54	27	3	0	0	0	0.33018	1	1355	1355		4.3292	0.73274	1	92893	+		28301	21092	16376	16377	34860	34860					0.06588154364590082
LWLSCHLLL	9	Unmodified	_LWLSCHLLL_					0	0	0			REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	REV__ENST00000447654.5_1_6:34212963-34213389:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.312438	1096.61032	0.3861	0.00021209	0.18155	9.973E-05	0.56765	0.00031182	549.312566742641	16.385	0.64249	16.323	15.943	16.586	-0.062534	-0.062618	2.554E-05	NaN	4.3292	37	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87122	+		28302	21092	16376	16377							0.06588154364590082
LWLSFLPLA	9	Unmodified	_LWLSFLPLA_					0	0	0			REV__ENST00000574946.5_1_17:6024531-6024672:+|nuORF	REV__ENST00000574946.5_1_17:6024531-6024672:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3321533203125	2	530.315503	1058.61645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.412	1	64.505	64.005	65.005	0.09288								0	0	0	0.21357	1	16002	16002		18.135	1.0221	1		+		28303	22437	16377	16378	34861	34861					0.08948995867763188
LWLSVFLWTT	10	Unmodified	_LWLSVFLWTT_					0	0	0			REV__ENSG00000100678|ENST00000356921|SLC8A3	REV__ENSG00000100678|ENST00000356921|SLC8A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3694458007812	2	633.350074	1264.6856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.29	1	105.29	104.79	105.79	0								0	0	0	0.38166	1	27895	27895		1.4819	0.15237	1		+		28304	14223	16378	16379	34862	34862					0.06384035096652951
LWLTPLHRAA	10	Unmodified	_LWLTPLHRAA_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52;ENST00000551023.1_1_12:56648058-56650843:-|nuORF	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3427124023438	2	589.345658	1176.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.94	1	117.92	117.42	118.42	-0.024147								0	0	0	0.38166	1	30510	30510		1.4819	0.8804	1				28305	4255	16379	16380	34863	34863					0.09549106250847217
LWLYFFFVI	9	Unmodified	_LWLYFFFVI_					0	0	0		ENST00000472040.1_1_2:11752588-11752696:+|nuORF	ENST00000472040.1_1_2:11752588-11752696:+|nuORF	ENST00000472040.1_1_2:11752588-11752696:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.215576171875	3	416.566961	1246.67905	-0.22635	-9.4289E-05	-0.61141	-0.00025469	-0.83776	-0.00034898	416.5666676701951	22.579	0.80658	22.579	22.189	22.996	0					57	27	3	0	0	0	0.25811	1	3140	3140		2.9952	1.8019	1	166640			28306	10888	16380	16381	34864	34864					0.0655814193594324
LWLYFFFVI	9	Unmodified	_LWLYFFFVI_					0	0	0		ENST00000472040.1_1_2:11752588-11752696:+|nuORF	ENST00000472040.1_1_2:11752588-11752696:+|nuORF	ENST00000472040.1_1_2:11752588-11752696:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	416.566961	1246.67905	0.023444	9.7661E-06	-0.66649	-0.00027764	-0.64305	-0.00026787	416.56664151786913	22.727	0.774	22.64	22.272	23.046	-0.087608	-0.0093045	3.6322E-06	NaN	2.9952	59	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144510			28307	10888	16380	16381							0.0655814193594324
LWLYFFFVI	9	Unmodified	_LWLYFFFVI_					0	0	0		ENST00000472040.1_1_2:11752588-11752696:+|nuORF	ENST00000472040.1_1_2:11752588-11752696:+|nuORF	ENST00000472040.1_1_2:11752588-11752696:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	416.566961	1246.67905	0.037338	1.5554E-05	-0.77505	-0.00032286	-0.73771	-0.00030731	416.5665669076653	22.773	0.62471	22.728	22.409	23.033	-0.044867	0.07874	-0.00013203	NaN	2.9952	55	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144030			28308	10888	16380	16381							0.0655814193594324
LWMRFRTL	8	Unmodified	_LWMRFRTL_					0	0	0			REV__ENST00000321892.8_1_17:65942259-65942382:+|nuORF	REV__ENST00000321892.8_1_17:65942259-65942382:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.8170776367188	2	561.815679	1121.6168	0.27116	0.00015234	1.421	0.00079832	1.6921	0.00095066	561.816884675251	38.125	0.83609	38.125	37.735	38.571	0					64	29	3	0	0	0	0.41758	1	7930	7930		16.942	0.79319	1	626930	+		28309	19973	16381	16382	34865	34865					0.06086092315968017
LWMTYEAIIT	10	Unmodified	_LWMTYEAIIT_					0	0	0		ENSG00000170961|ENST00000303924|HAS2	ENSG00000170961|ENST00000303924|HAS2	ENSG00000170961|ENST00000303924|HAS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.3186645507812	2	620.81775	1239.62095	-0.097401	-6.0468E-05	-0.0011287	-7.0071E-07	-0.09853	-6.1169E-05	620.8177754180732	17.39	1.3301	17.273	16.937	18.267	-0.11739					159	46	5	0	0	0	0.41512	1	1798	1798		0.40072	0	1	3614800			28310	6501	16382	16383	34866	34866					0.010720922283326217
LWNPSSDQFL	10	Unmodified	_LWNPSSDQFL_					0	0	0			REV__ENST00000260665.11_1_2:44115434-44115623:-|nuORF	REV__ENST00000260665.11_1_2:44115434-44115623:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.793212890625	2	603.793121	1205.57169	0.46551	0.00028107	-0.11373	-6.867E-05	0.35178	0.0002124	604.2944502570817	26.833	0.4747	26.821	26.595	27.07	-0.011562					29	16	2	0	0	0	0.38773	1	4522	4522		5.7319	0.43497	1	103550	+		28311	19583	16383	16384	34867	34867					-0.022874797362419486
LWNSTHHVF	9	Unmodified	_LWNSTHHVF_					0	0	0		nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000531050.5_1_6:128321419-128718758:-|nuORF;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF	nc|ENSG00000152894|Q15262|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.7835693359375	2	570.78289	1139.55123	-0.05375	-3.0679E-05	0.71451	0.00040783	0.66076	0.00037715	570.7834455672875	28.38	0.75259	28.38	27.992	28.745	0.0004673					52	26	3	0	0	0	0.34374	1	4900	4900		2.3027	0	1	289130			28312	5045	16384	16385	34868	34868					-0.012966056053983266
LWPIQSGILHF	11	Unmodified	_LWPIQSGILHF_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-3|NQO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.6023864746094	3	437.580041	1309.71829	0.27039	0.00011832	-0.30013	-0.00013133	-0.029742	-1.3014E-05	437.91431825647237	47.927	0.75713	47.927	47.849	48.606	0					36	26	2	0	0	0	0.33169	1	10917	10917		3.8459	0.49018	1	1369000			28313	7215	16385	16386	34869	34869					0.07582242219496038
LWPRAATRRR	10	Unmodified	_LWPRAATRRR_					0	0	0			REV__ENST00000481323.1_1_20:17948856-17949358:-|nuORF	REV__ENST00000481323.1_1_20:17948856-17949358:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8822631835938	2	641.883804	1281.75306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.011	1	97.011	96.511	97.511	0								0	0	0	0.38126	1	25933	25933		1.6526	0	1		+		28314	21490	16386	16387	34870	34870					0.1234492287080684
LWPRKQKR	8	Unmodified	_LWPRKQKR_					0	0	0		nc|ENSG00000236438|C9JC47|FAM157A;nc|ENSG00000233013|P0CG42|FAM157B;nc|ENSG00000260528|P0CG43|FAM157C	nc|ENSG00000236438|C9JC47|FAM157A	nc|ENSG00000236438|C9JC47|FAM157A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3056030273438	2	556.345992	1110.67743	0.12429	6.9147E-05	-1.5132	-0.00084186	-1.3889	-0.00077271	556.3449942972592	17.203	0.21496	17.086	16.965	17.18	-0.11739					10	7	2	0	0	0	0.34408	1	1525	1525		2.3027	0.24298	1	19378			28315	12956	16387	16388	34871	34871					0.12651945690549837
LWPRTARVCL	10	Unmodified	_LWPRTARVCL_					0	0	0		ENST00000460614.1_1_9:139943111-139943842:-|nuORF	ENST00000460614.1_1_9:139943111-139943842:-|nuORF	ENST00000460614.1_1_9:139943111-139943842:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.88037109375	3	405.565737	1213.67538	-0.12309	-4.9922E-05	-2.0644	-0.00083725	-2.1875	-0.00088718	405.56499893346114	24.652	0.46526	24.596	24.283	24.748	-0.055931					21	15	2	0	0	0	0.31746	1	3786	3786		9.544	1.0997	1	24020			28316	10733	16388	16389	34872	34872					0.07709148890421602
LWQGVRESR	9	Unmodified	_LWQGVRESR_					0	0	0			REV__ENST00000244769.8_1_6:16303126-16303444:-|nuORF	REV__ENST00000244769.8_1_6:16303126-16303444:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.806884765625	2	565.806897	1129.59924	0.24544	0.00013887	0.010679	6.0424E-06	0.25612	0.00014491	565.8067942660879	21.777	0.67469	21.777	21.401	22.076	0					44	24	2	0	0	0	0.33276	1	2940	2940		3.9444	0	1	123330	+		28317	19500	16389	16390	34873	34873					0.03962468314648504
LWQGVRESR	9	Unmodified	_LWQGVRESR_					0	0	0			REV__ENST00000244769.8_1_6:16303126-16303444:-|nuORF	REV__ENST00000244769.8_1_6:16303126-16303444:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.8070678710938	2	565.806897	1129.59924	0.20196	0.00011427	0.10248	5.7985E-05	0.30444	0.00017226	565.806863948623	21.783	0.77447	21.734	21.316	22.09	-0.049377					58	27	3	0	0	0	0.33276	1	2960	2960		3.9444	0.3479	1	149760	+		28318	19500	16389	16390	34874	34874					0.03962468314648504
LWQLGVDYF	9	Unmodified	_LWQLGVDYF_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000578830.5_1_17:73221901-73228130:+|nuORF;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2716064453125	2	570.78985	1139.56515	0.6468	0.00036919	-1.2585	-0.00071834	-0.61171	-0.00034916	570.7894311600439	78.287	0.74575	78.287	77.979	78.725	0					77	27	4	0	0	0	0.28128	1	20189	20189		11.64	0.14559	1	483190			28319	3208;12082	16390	16391	34875	34875					0.0009462710304433131
LWRCAWAIS	9	Unmodified	_LWRCAWAIS_					0	0	0		ENST00000481195.5_1_5:133541733-133541778:-|nuORF	ENST00000481195.5_1_5:133541733-133541778:-|nuORF	ENST00000481195.5_1_5:133541733-133541778:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.310302734375	2	553.284211	1104.55387	0.12571	6.9555E-05	0.95414	0.00052791	1.0799	0.00059746	553.2849635123442	27.444	0.67767	27.423	27.188	27.865	-0.021412					38	23	2	0	0	0	0.25323	1	4630	4630		10.074	1.4806	1	355270			28320	11023	16391	16392	34876	34876					0.005775265278998631
LWRHHRAL	8	Unmodified	_LWRHHRAL_					0	0	0		ENST00000589367.5_1_17:33464890-33466847:-|nuORF	ENST00000589367.5_1_17:33464890-33466847:-|nuORF	ENST00000589367.5_1_17:33464890-33466847:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.8161010742188	2	544.814859	1087.61517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.613	1	12.545	12.045	13.045	-0.067496								0	0	0	0.37664	1	178	178		2.5775	0	1				28321	12162	16392	16393	34877	34877					0.07486219342217737
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.31011962890625	3	507.309773	1518.90749	0.22564	0.00011447	-0.31699	-0.00016081	-0.091348	-4.6342E-05	507.30943825179736	93.262	1.5783	93.262	92.038	93.616	0					343	132	4	0	0	0	0.48247	4	24680	24680;24835;24879;24917		0.40827	0.40827	1	584590			28322	7983	16393	16394	34878;34879;34880;34881	34878					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.30950927734375	3	507.309773	1518.90749	0.19204	9.7423E-05	-0.12847	-6.5176E-05	0.063564	3.2247E-05	507.30958902980785	93.838	0.57186	93.838	93.488	94.06	0					144	45	4	0	0	0	0.47713	2	24958	24958;25002		1.1098	1.1098	1	481580			28323	7983	16393	16394	34882;34883	34882					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.309814453125	3	507.309773	1518.90749	0.13199	6.6961E-05	0.18539	9.405E-05	0.31738	0.00016101	507.30971754654917	95.028	2.2422	95.028	94.003	96.245	0					500	210	4	0	0	0	0.47713	4	25253	25213;25253;25292;25415		1.1098	1.0264	1	1050700			28324	7983	16393	16394	34884;34885;34886;34887	34885					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.3094787597656	3	507.309773	1518.90749	0.24615	0.00012487	-0.2415	-0.00012252	0.0046452	2.3566E-06	507.30950160767895	93.1	1.5039	93.189	92.626	94.13	0.089203					206	126	2	0	0	0	0.33336	1	24907	24907		1.1098	1.0149	1	1795900			28325	7983	16393	16394	34888	34888					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.309814453125	3	507.309773	1518.90749	0.3679	0.00018664	0.13064	6.6274E-05	0.49853	0.00025291	507.30970424954614	94.893	2.6382	94.891	94.003	96.641	-0.0020065					854	241	5	0	0	0	0.47713	6	25536	25305;25387;25536;25574;25615;25656		1.1098	1.0149	1	2770600			28326	7983	16393	16394	34889;34890;34891;34892;34893;34894	34891					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.3094787597656	3	507.309773	1518.90749	0.45187	0.00022924	-0.28492	-0.00014454	0.16695	8.4696E-05	507.3093499100698	92.362	0.69502	92.362	92.04	92.735	0.00046539					131	47	3	0	0	0	0.33348	1	24646	24646		0.40827	0.40827	1	879060			28327	7983	16393	16394	34895	34895					0.16879314512834753
LWRILYKKTLW	11	Unmodified	_LWRILYKKTLW_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	507.309773	1518.90749	0.42623	0.00021623	-0.42695	-0.0002166	-0.00072359	-3.6709E-07	507.3094262128511	93.165	2.1944	93.165	91.864	94.059	-0.00051117	-0.040581	-0.00014862	NaN	1.1098	476	170	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1551300			28328	7983	16393	16394							0.16879314512834753
LWRKSWRYC	9	Unmodified	_LWRKSWRYC_					0	0	0			REV__nc|ENSG00000075651|Q13393-3|PLD1;REV__ENSG00000129219|ENST00000263088|PLD2	REV__ENSG00000129219|ENST00000263088|PLD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.334228515625	2	649.334767	1296.65498	0.11579	7.519E-05	0.087803	5.7013E-05	0.2036	0.0001322	649.3346759022094	12.736	0.14591	12.736	12.669	12.815	0					7	4	2	0	0	0	0.35563	1	233	233		0.52476	0	1	23861	+		28329	15405;13817	16394	16395	34896	34896					0.018519782306384514
LWRKSWRYC	9	Unmodified	_LWRKSWRYC_					0	0	0			REV__nc|ENSG00000075651|Q13393-3|PLD1;REV__ENSG00000129219|ENST00000263088|PLD2	REV__ENSG00000129219|ENST00000263088|PLD2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	649.334767	1296.65498	0.11579	7.519E-05	0.087803	5.7013E-05	0.2036	0.0001322	649.3346759022094	12.736	0.14591	12.736	12.669	12.815	0	0.039911	5.2018E-05	NaN	0.52476	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23861	+		28330	15405;13817	16394	16395							0.018519782306384514
LWRKSWRYC	9	Unmodified	_LWRKSWRYC_					0	0	0			REV__nc|ENSG00000075651|Q13393-3|PLD1;REV__ENSG00000129219|ENST00000263088|PLD2	REV__ENSG00000129219|ENST00000263088|PLD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	649.334767	1296.65498	0.046278	3.005E-05	0.031293	2.032E-05	0.077571	5.0369E-05	649.3345946748442	12.756	0.26471	12.656	12.549	12.814	-0.099291	-0.039911	-2.1369E-05	NaN	0.52476	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23776	+		28331	15405;13817	16394	16395							0.018519782306384514
LWRLDLTL	8	Unmodified	_LWRLDLTL_					0	0	0			REV__ENST00000475794.5_1_1:44679151-44680992:+|nuORF	REV__ENST00000475794.5_1_1:44679151-44680992:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2960205078125	2	515.30821	1028.60187	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.036	1	79.007	78.507	79.507	-0.028931								0	0	0	0.35843	1	20460	20460		10.824	0.75	1		+		28332	21412	16395	16396	34897	34897					0.08870923719609891
LWRPPAWG	8	Unmodified	_LWRPPAWG_					0	0	0		ENST00000263955.8_1_2:197028150-197036136:-|nuORF	ENST00000263955.8_1_2:197028150-197036136:-|nuORF	ENST00000263955.8_1_2:197028150-197036136:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2828674316406	2	491.766512	981.518471	0.019503	9.591E-06	0.821	0.00040374	0.8405	0.00041333	491.7668009706631	13.411	0.36989	13.411	13.227	13.597	0					14	12	2	0	0	0	0.34247	1	419	419		8.5933	3.3626	1	52623			28333	9020	16396	16397	34898	34898					0.026972320624167878
LWRRGFINV	9	Unmodified	_LWRRGFINV_					0	0	0			REV__ENST00000481150.1_1_6:90717961-90718406:-|nuORF	REV__ENST00000481150.1_1_6:90717961-90718406:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.838623046875	2	580.838	1159.66145	0.11104	6.4496E-05	-0.10466	-6.0791E-05	0.0063783	3.7048E-06	580.8378688594003	18.574	0.54164	18.456	18.242	18.784	-0.11739					46	18	3	0	0	0	0.25622	1	1947	1947		7.2892	1.5574	1	273920	+		28334	21484	16397	16398	34899	34899					0.08800239453648828
LWRSDHPETR	10	Unmodified	_LWRSDHPETR_					0	0	0			REV__ENSG00000012171|ENST00000616701|SEMA3B	REV__ENSG00000012171|ENST00000616701|SEMA3B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.88580322265625	3	432.886304	1295.63708	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.203	1	14.098	13.598	14.598	-0.10466								0	0	0	0.34966	1	657	657		14.957	2.7296	1		+		28335	13438	16398	16399	34900	34900					0.0010893450944422511
LWSAWQYGQL	10	Unmodified	_LWSAWQYGQL_					0	0	0			REV__ENST00000499023.6_1_4:155463351-155465612:-|nuORF	REV__ENST00000499023.6_1_4:155463351-155465612:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.3111572265625	2	626.31148	1250.60841	-0.20265	-0.00012692	-0.1888	-0.00011825	-0.39144	-0.00024517	626.3113986998176	25.915	0.902	25.877	25.531	26.433	-0.038671					92	31	4	0	0	0	0.4022	1	4272	4272		2.9952	0	1	1824400	+		28336	21701	16399	16400	34901	34901					-0.00687183119657675
LWSRIYLFDP	10	Unmodified	_LWSRIYLFDP_					0	0	0			REV__ENSG00000186480|ENST00000340368|INSIG1	REV__ENSG00000186480|ENST00000340368|INSIG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.8791809082031	3	437.236163	1308.68666	-0.10672	-4.6662E-05	1.7412	0.00076131	1.6345	0.00071464	437.2369071425734	17.91	0.58824	17.85	17.414	18.002	-0.060429					27	20	2	0	0	0	0.32162	1	1706	1706		0.77653	0.078866	1	50263	+		28337	18450	16400	16401	34902	34902					0.044662494655540286
LWSRIYLFDP	10	Unmodified	_LWSRIYLFDP_					0	0	0			REV__ENSG00000186480|ENST00000340368|INSIG1	REV__ENSG00000186480|ENST00000340368|INSIG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	437.236163	1308.68666	-0.15718	-6.8727E-05	0.44605	0.00019503	0.28887	0.0001263	437.23623696448936	18.159	0.75458	18.042	17.603	18.358	-0.11739	0.095894	-0.00089419	NaN	0.77653	37	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42557	+		28338	18450	16400	16401							0.044662494655540286
LWTKEWYIGYY	11	Unmodified	_LWTKEWYIGYY_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2492980957031	3	507.918611	1520.734	0.5273	0.00026783	-0.28401	-0.00014425	0.2433	0.00012358	507.9188673396648	31.949	0.5078	31.992	31.823	32.331	0.042364					22	17	2	0	0	0	0.33326	1	6111	6111		1.4551	0.12547	1	400840			28339	3451	16401	16402	34903	34903					-0.005535160541057849
LWVLQELFY	9	Unmodified	_LWVLQELFY_					0	0	0		ENST00000369095.5_1_1:150254991-150255691:+|nuORF	ENST00000369095.5_1_1:150254991-150255691:+|nuORF	ENST00000369095.5_1_1:150254991-150255691:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.22198486328125	3	404.221742	1209.6434	0.13155	5.3177E-05	0.11006	4.4489E-05	0.24162	9.7666E-05	404.221664833133	20.148	1.1788	20.092	19.705	20.883	-0.055693					70	42	2	0	0	0	0.33911	1	2520	2520		2.9952	0	1	197970			28340	9775	16402	16403	34904	34904					0.04696059688285459
LWVLVHIW	8	Unmodified	_LWVLVHIW_					0	0	0		ENST00000588299.1_1_19:39123221-39123365:+|nuORF	ENST00000588299.1_1_19:39123221-39123365:+|nuORF	ENST00000588299.1_1_19:39123221-39123365:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.317138671875	2	533.315838	1064.61712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.592	1	12.525	12.025	13.025	-0.067681								0	0	0	0.37992	1	172	172		0.79363	0	1				28341	12143	16403	16404	34905	34905					0.08739835307460453
LWVNRPQRSSR	11	Unmodified	_LWVNRPQRSSR_					0	0	0		ENSG00000167850|ENST00000330793|CD300C	ENSG00000167850|ENST00000330793|CD300C	ENSG00000167850|ENST00000330793|CD300C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2821350097656	3	466.928615	1397.76401	-0.14621	-6.8267E-05	-0.40068	-0.00018709	-0.54689	-0.00025536	466.92845787547043	17.178	0.5287	17.061	16.858	17.386	-0.11739					38	18	3	0	0	0	0.33326	1	1635	1635		1.4551	0.34536	1	80835			28342	6217	16404	16405	34906	34906					0.08104280454449508
LWVNRPQRSSR	11	Unmodified	_LWVNRPQRSSR_					0	0	0		ENSG00000167850|ENST00000330793|CD300C	ENSG00000167850|ENST00000330793|CD300C	ENSG00000167850|ENST00000330793|CD300C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	466.928615	1397.76401	-0.020366	-9.5093E-06	-0.48283	-0.00022545	-0.50319	-0.00023496	466.9283254246543	16.999	0.37794	16.999	16.839	17.217	0	-0.023269	3.8721E-05	NaN	1.4551	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125510			28343	6217	16404	16405							0.08104280454449508
LWVNRPQRSSR	11	Unmodified	_LWVNRPQRSSR_					0	0	0		ENSG00000167850|ENST00000330793|CD300C	ENSG00000167850|ENST00000330793|CD300C	ENSG00000167850|ENST00000330793|CD300C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	466.928615	1397.76401	0.2744	0.00012812	-0.8246	-0.00038503	-0.5502	-0.0002569	466.92818013843464	17.068	0.54575	17.008	16.784	17.33	-0.060429	-0.014908	-0.00044003	NaN	1.4551	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110070			28344	6217	16404	16405							0.08104280454449508
LWVRIRHR	8	Unmodified	_LWVRIRHR_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.3431396484375	2	568.351609	1134.68866	-0.10312	-5.8611E-05	-0.72823	-0.00041389	-0.83135	-0.0004725	568.3517255414802	12.381	0.22302	12.381	12.303	12.526	0					9	6	2	0	0	0	0.34434	1	86	86		0.79363	0.19213	1	44137			28345	2720	16405	16406	34907	34907					0.12670767784698
LWVRPVWYI	9	Unmodified	_LWVRPVWYI_					0	0	0			REV__ENST00000478411.1_1_7:44247794-44248296:+|nuORF	REV__ENST00000478411.1_1_7:44247794-44248296:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.88421630859375	3	411.237726	1230.69135	-0.072527	-2.9826E-05	3.0276	0.0012451	2.9551	0.0012153	411.23896836447466	20.173	0.30236	20.173	19.905	20.207	0					17	11	2	0	0	0	0.26099	1	2417	2417		2.9952	0.26005	1	117530	+		28346	21451	16406	16407	34908	34908					0.08523178398991149
LWWPRRPAGI	10	Unmodified	_LWWPRRPAGI_					0	0	0		ENST00000233535.8_1_2:27481772-27486087:-|nuORF	ENST00000233535.8_1_2:27481772-27486087:-|nuORF	ENST00000233535.8_1_2:27481772-27486087:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.9215087890625	3	417.908492	1250.70365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.511	1	39.603	39.103	40.103	0.09267								0	0	0	0.36631	1	8342	8342		7.9454	2.0773	1				28347	8870	16407	16408	34909	34909					0.08832214862013643
LWWPRRPAGI	10	Unmodified	_LWWPRRPAGI_					0	0	0		ENST00000233535.8_1_2:27481772-27486087:-|nuORF	ENST00000233535.8_1_2:27481772-27486087:-|nuORF	ENST00000233535.8_1_2:27481772-27486087:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.92095947265625	3	417.908492	1250.70365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.514	1	39.613	39.113	40.113	0.099407								0	0	0	0.37235	1	8335	8335		5.4027	0.35519	1				28348	8870	16407	16408	34910	34910					0.08832214862013643
LWWRRRRH	8	Unmodified	_LWWRRRRH_					0	0	0			REV__ENST00000297293.5_1_7:97832983-97833265:+|nuORF	REV__ENST00000297293.5_1_7:97832983-97833265:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3687133789062	2	633.365582	1264.71661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.79	1	114.8	114.3	115.3	0.016708								0	0	0	0.38004	1	29844	29844		0.69038	0.28966	1		+		28349	19802	16408	16409	34911	34911					0.0948409076477219
LYAALSKYF	9	Unmodified	_LYAALSKYF_					0	0	0		ENST00000263688.3_1_1:172571268-172571304:+|nuORF	ENST00000263688.3_1_1:172571268-172571304:+|nuORF	ENST00000263688.3_1_1:172571268-172571304:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3163452148438	2	538.294768	1074.57498	0.66552	0.00035824	0.051022	2.7465E-05	0.71654	0.00038571	538.2947705871953	74.535	3.2096	74.505	72.9	76.109	-0.030663					311	116	5	0	0	0	0.29662	1	19268	19268		9.3474	0	1	6916000			28350	9011	16409	16410	34912	34912					0.040678151084193814
LYAASFINL	9	Unmodified	_LYAASFINL_					0	0	0		nc|ENSG00000076685|P49902-2|NT5C2;ENSG00000076685|ENST00000404739|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	nc|ENSG00000076685|P49902-2|NT5C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2791748046875	2	506.279118	1010.54368	0.24265	0.00012285	-0.13342	-6.7547E-05	0.10923	5.5302E-05	506.27902412278524	80.115	0.65379	80.178	79.918	80.572	0.062523					60	24	3	0	0	0	0.034444	1	20839	20839		58.679	7.049	1	564320			28351	1069	16410	16411	34913	34913					0.038832420743119656
LYACPMHPF	9	Unmodified	_LYACPMHPF_					0	0	0			REV__ENST00000486268.5_1_20:34129846-34130758:+|nuORF	REV__ENST00000486268.5_1_20:34129846-34130758:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7464599609375	2	539.746073	1077.47759	0.66564	0.00035928	0.58971	0.00031829	1.2554	0.00067757	539.74634411075	56.499	0.7663	56.578	56.331	57.097	0.078671					43	28	2	0	0	0	0.21902	1	13638	13638		20.871	2.7362	1	522960	+		28352	15296	16411	16412	34914	34914					-0.058046133637390085
LYADVGGKQF	10	Unmodified	_LYADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2855224609375	2	549.284931	1096.55531	0.63178	0.00034703	0.63587	0.00034927	1.2677	0.0006963	549.2851979780695	44.587	1.2209	44.587	44.28	45.501	0					107	44	5	0	0	0	2.3869E-20	2	9914	9866;9914		209.87	145.91	1	8511700			28353	7210	16412	16413	34915;34916	34916					0.010894390976773138
LYADVGGKQF	10	Unmodified	_LYADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2859497070312	2	549.284931	1096.55531	0.65023	0.00035716	0.4494	0.00024685	1.0996	0.00060401	549.285093771451	44.342	1.3098	44.411	44.147	45.456	0.068569					113	47	5	0	0	0	2.3869E-20	2	9791	9791;9837		209.87	147.3	1	8514100			28354	7210	16412	16413	34917;34918	34917					0.010894390976773138
LYADVGGKQF	10	Unmodified	_LYADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.284931	1096.55531	0.49536	0.00027209	0.60033	0.00032975	1.0957	0.00060185	549.2851822385384	44.306	1.3013	44.381	44.067	45.368	0.075047	-0.078638	2.608E-05	NaN	209.87	120	47	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7467500			28355	7210	16412	16413							0.010894390976773138
LYAENYKIM	9	Unmodified	_LYAENYKIM_					0	0	0		L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|34|3|sense	L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|34|3|sense	L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|34|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.7869262695312	2	572.788992	1143.56343	0.21312	0.00012207	-3.7542	-0.0021504	-3.5411	-0.0020283	572.7867463647212	80.273	0.50389	80.273	80.009	80.513	0					33	18	2	0	0	0	0.23784	1	20880	20880		13.906	1.6654	1	403540			28356	12450	16413	16414	34919	34919					-0.0026074997724663262
LYAFDVSGLF	10	Unmodified	_LYAFDVSGLF_					0	0	0		ENST00000244670.12_1_6:42984918-42985899:+|nuORF	ENST00000244670.12_1_6:42984918-42985899:+|nuORF	ENST00000244670.12_1_6:42984918-42985899:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2788696289062	2	566.289682	1130.56481	0.2353	0.00013325	0.10181	5.7656E-05	0.33711	0.0001909	566.2898502495572	70.035	1.3975	70.035	69.618	71.015	0					194	50	7	0	0	0	0.2892	1	17925	17925		21.747	1.293	1	10146000			28357	8894	16414	16415	34920	34920					0.004752073831923553
LYAHTIAGF	9	Unmodified	_LYAHTIAGF_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7637023925781	2	496.763635	991.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.607	1	50.652	50.152	51.152	0.044891								0	0	0	0.0010795	1	11747	11747		93.883	4.4566	1				28358	744	16415	16416	34921	34921					0.016620887600993228
LYAHTIAGF	9	Unmodified	_LYAHTIAGF_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.763671875	2	496.763635	991.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.598	1	50.619	50.119	51.119	0.020691								0	0	0	0.0040251	1	11737	11737		89.427	11.442	1				28359	744	16415	16416	34922	34922					0.016620887600993228
LYAIFTKAF	9	Unmodified	_LYAIFTKAF_					0	0	0		nc|ENSG00000165409|P16473|TSHR;ENSG00000165409|ENST00000298171|TSHR	nc|ENSG00000165409|P16473|TSHR	nc|ENSG00000165409|P16473|TSHR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.315673828125	2	537.305136	1072.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.232	1	76.285	75.785	76.785	0.053413								0	0	0	0.21009	1	19616	19616		19.257	3.4098	1				28360	5957	16416	16417	34923	34923					0.062324054880718904
LYAIFTKTF	9	Unmodified	_LYAIFTKTF_					0	0	0		nc|ENSG00000138039|P22888-2|LHCGR;ENSG00000138039|ENST00000294954|LHCGR	nc|ENSG00000138039|P22888-2|LHCGR	nc|ENSG00000138039|P22888-2|LHCGR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3004150390625	2	552.310418	1102.60628	0.15424	8.5186E-05	0.39914	0.00022045	0.55338	0.00030564	552.3101411623333	65.026	0.8328	65.115	64.714	65.547	0.088882					72	30	4	0	0	0	0.26879	1	16138	16138		13.508	3.434	1	499120			28361	4109	16417	16418	34924	34924					0.059083881425067375
LYAIFTKTF	9	Unmodified	_LYAIFTKTF_					0	0	0		nc|ENSG00000138039|P22888-2|LHCGR;ENSG00000138039|ENST00000294954|LHCGR	nc|ENSG00000138039|P22888-2|LHCGR	nc|ENSG00000138039|P22888-2|LHCGR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3004150390625	2	552.310418	1102.60628	0.019274	1.0645E-05	0.18726	0.00010343	0.20653	0.00011407	552.3102479998637	65.148	0.64422	65.136	64.86	65.504	-0.011337					51	23	3	0	0	0	0.26879	1	16176	16176		13.508	2.3934	1	524150			28362	4109	16417	16418	34925	34925					0.059083881425067375
LYAITHYI	8	Unmodified	_LYAITHYI_					0	0	0			REV__ENST00000539708.5_1_12:16513351-16516972:+|nuORF	REV__ENST00000539708.5_1_12:16513351-16516972:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.81109619140625	2	497.273835	992.533118	0.45998	0.00022873	-0.12096	-6.0151E-05	0.33901	0.00016858	497.27345298596975	76.817	0.72733	76.817	76.501	77.228	0					39	26	2	0	0	0	0.34046	1	19770	19770		14.582	0	1	114840	+		28363	13401	16418	16419	34926	34926					0.03655259419895174
LYAKIAEAF	9	Unmodified	_LYAKIAEAF_					0	0	0		ENSG00000179855|ENST00000644452|GIPC3	ENSG00000179855|ENST00000644452|GIPC3	ENSG00000179855|ENST00000644452|GIPC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2743530273438	2	513.286943	1024.55933	0.40029	0.00020547	-0.65603	-0.00033673	-0.25573	-0.00013126	513.2867860426472	54.325	0.49257	54.309	54.03	54.522	-0.015923					32	16	3	0	0	0	0.17277	1	12928	12928		27.629	3.6082	1	312080			28364	7146	16419	16420	34927	34927					0.04803528591378381
LYALAAKDIF	10	Unmodified	_LYALAAKDIF_					0	0	0		nc|ENSG00000186638|Q5T7B8-4|KIF24;ENSG00000186638|ENST00000402558|KIF24	nc|ENSG00000186638|Q5T7B8-4|KIF24	nc|ENSG00000186638|Q5T7B8-4|KIF24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8212890625	2	562.82115	1123.62775	0.27722	0.00015603	0.092163	5.1871E-05	0.36938	0.0002079	562.821150150616	76.591	0.56154	76.591	76.396	76.957	0					52	20	3	0	0	0	0.35073	1	19781	19781		12.532	2.4576	1	320460			28365	7632	16420	16421	34928	34928					0.07087773171224399
LYALEQDSYL	10	Unmodified	_LYALEQDSYL_					0	0	0			REV__ENSG00000147465|ENST00000276449|STAR	REV__ENSG00000147465|ENST00000276449|STAR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.8899230957031	3	405.536166	1213.58667	-0.14406	-5.8421E-05	2.4333	0.0009868	2.2893	0.00092838	405.5369525428624	44.117	0.27391	44.117	43.932	44.206	0					13	9	2	0	0	0	0.3156	1	9743	9743		6.1918	0	1	99959	+		28366	16388	16421	16422	34929	34929					-0.011580326588955359
LYALEQDSYL	10	Unmodified	_LYALEQDSYL_					0	0	0			REV__ENSG00000147465|ENST00000276449|STAR	REV__ENSG00000147465|ENST00000276449|STAR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.536166	1213.58667	-0.049292	-1.999E-05	2.2559	0.00091487	2.2067	0.00089488	405.53693042656096	43.846	0.36502	43.93	43.684	44.049	0.083996	-0.093642	-9.8242E-05	NaN	6.1918	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157100	+		28367	16388	16421	16422							-0.011580326588955359
LYALRLAVTL	10	Unmodified	_LYALRLAVTL_					0	0	0			REV__ENST00000535149.5_1_X:70520727-70520889:+|nuORF	REV__ENST00000535149.5_1_X:70520727-70520889:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2788696289062	2	566.858067	1131.70158	0.47056	0.00026674	0.11583	6.5661E-05	0.58639	0.0003324	566.8580753432769	53.85	0.77779	53.85	53.358	54.136	0					37	28	2	0	0	0	0.31482	1	12614	12614		11.64	3.047	1	149020	+		28368	22063	16422	16423	34930	34930					0.1409974133355263
LYALRLAVTL	10	Unmodified	_LYALRLAVTL_					0	0	0			REV__ENST00000535149.5_1_X:70520727-70520889:+|nuORF	REV__ENST00000535149.5_1_X:70520727-70520889:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	566.858067	1131.70158	0.29518	0.00016732	0.29206	0.00016556	0.58724	0.00033288	566.858128594376	53.674	0.57558	53.731	53.56	54.136	0.056255	-0.059754	6.7243E-05	NaN	11.64	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207180	+		28369	22063	16422	16423							0.1409974133355263
LYANFLDHF	9	Unmodified	_LYANFLDHF_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF;nc|ENSG00000103932|Q9BWH6-3|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3103637695312	2	570.279649	1138.54475	0.34012	0.00019397	-0.88442	-0.00050437	-0.5443	-0.0003104	570.2794596185792	70.1	0.33879	70.166	69.993	70.332	0.066048					26	11	3	0	0	0	0.18123	1	17768	17768		34.402	18.555	1	208690			28370	1855	16423	16424	34931	34931					-0.018985435567856257
LYANFLDHF	9	Unmodified	_LYANFLDHF_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF;nc|ENSG00000103932|Q9BWH6-3|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	570.279649	1138.54475	0.24578	0.00014016	-0.69183	-0.00039454	-0.44605	-0.00025438	570.2799137787514	70.166	0.40477	70.166	69.92	70.325	0	0.0080373	0.00014958	NaN	34.402	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166010			28371	1855	16423	16424							-0.018985435567856257
LYANFLDHF	9	Unmodified	_LYANFLDHF_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF;nc|ENSG00000103932|Q9BWH6-3|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	570.279649	1138.54475	0.26986	0.00015389	-0.86442	-0.00049296	-0.59457	-0.00033907	570.27974506838	70.164	0.46735	70.142	69.913	70.381	-0.022087	-0.015961	-4.7271E-05	NaN	34.402	38	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194950			28372	1855	16423	16424							-0.018985435567856257
LYANMFERL	9	Oxidation (M)	_LYANM(Oxidation (M))FERL_		LYANM(1)FERL		LYANM(160)FERL	0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.7924194335938	2	586.792066	1171.56958	0.52544	0.00030833	-0.35081	-0.00020585	0.17463	0.00010247	586.7919845664733	51.26	0.56008	51.26	50.896	51.456	0					74	20	5	0	0	0	5.7257E-07	3	11893	11893;11943;11995		157.8	98.335	1	10372000			28373	309	16424	16425	34932;34933;34934	34932		25			-0.009342317456912497
LYANMFERL	9	Oxidation (M)	_LYANM(Oxidation (M))FERL_		LYANM(1)FERL		LYANM(190)FERL	0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.7923583984375	2	586.792066	1171.56958	0.37882	0.00022229	0.1529	8.972E-05	0.53172	0.00031201	586.7921205281363	51.659	1.4185	51.659	51.456	52.875	0					121	51	4	0	0	0	4.8913E-11	4	12089	12042;12089;12132;12184		187.3	91.185	1	9089100			28374	309	16424	16425	34935;34936;34937;34938	34936		25			-0.009342317456912497
LYANMFERL	9	Oxidation (M)	_LYANM(Oxidation (M))FERL_		LYANM(1)FERL		LYANM(150)FERL	0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.792236328125	2	586.792066	1171.56958	0.34619	0.00020314	-0.15046	-8.829E-05	0.19573	0.00011485	586.7920962855582	51.234	0.55381	51.28	50.9	51.454	0.046574					70	20	4	0	0	0	5.4053E-05	3	11935	11890;11935;11984		148.27	83.082	1	10726000			28375	309	16424	16425	34939;34940;34941	34940		25			-0.009342317456912497
LYANMFERL	9	Oxidation (M)	_LYANM(Oxidation (M))FERL_		LYANM(1)FERL		LYANM(170)FERL	0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.7922973632812	2	586.792066	1171.56958	0.29443	0.00017277	0.20385	0.00011962	0.49828	0.00029239	586.7922026561766	51.601	1.2237	51.648	51.454	52.678	0.046577					112	44	4	0	0	0	1.6536E-07	4	12035	12035;12083;12128;12196		173.69	88.045	1	9391100			28376	309	16424	16425	34942;34943;34944;34945	34942		25			-0.009342317456912497
LYANMFERL	9	Oxidation (M)	_LYANM(Oxidation (M))FERL_		LYANM(1)FERL		LYANM(160)FERL	0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.792236328125	2	586.792066	1171.56958	0.44132	0.00025896	-0.2996	-0.00017581	0.14172	8.3158E-05	586.7920040327871	51.396	0.59891	51.405	51.042	51.641	0.0095634					86	22	5	0	0	0	4.984E-07	3	11970	11920;11970;12019		160.69	86.838	1	9479500			28377	309	16424	16425	34946;34947;34948	34947		25			-0.009342317456912497
LYANMFERL	9	Oxidation (M)	_LYANM(Oxidation (M))FERL_		LYANM(1)FERL		LYANM(160)FERL	0	0	1		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.7923583984375	2	586.792066	1171.56958	0.22069	0.0001295	0.1686	9.8936E-05	0.38929	0.00022843	586.7922141319252	51.803	1.4362	51.804	51.578	53.015	0.0013237					131	52	4	0	0	0	4.984E-07	4	12117	12071;12117;12167;12220		160.69	81.811	1	9397800			28378	309	16424	16425	34949;34950;34951;34952	34950		25			-0.009342317456912497
LYAPAQLAASL	11	Unmodified	_LYAPAQLAASL_					0	0	0			REV__ENST00000371752.5_2_20:47865118-47865181:-|nuORF	REV__ENST00000371752.5_2_20:47865118-47865181:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2821655273438	2	559.316232	1116.61791	0.065493	3.6631E-05	-1.1239	-0.00062863	-1.0584	-0.000592	559.3159488252331	67.018	0.59512	67.003	66.764	67.359	-0.014145					38	20	3	0	0	0	0.32477	1	16893	16893		16.149	3.9084	1	178310	+		28379	20403	16425	16426	34953	34953					0.06426585165854704
LYAPDVKLF	9	Unmodified	_LYAPDVKLF_					0	0	0			REV__ENSG00000061455|ENST00000407847|PRDM6	REV__ENSG00000061455|ENST00000407847|PRDM6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2843017578125	2	533.302593	1064.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.596	1	80.569	80.069	81.069	-0.026825								0	0	0	0.24077	1	20937	20937		9.3474	0	1		+		28380	13624	16426	16427	34954	34954					0.06092101625449686
LYAPYICIF	9	Unmodified	_LYAPYICIF_					0	0	0			REV__ENST00000512790.5_1_5:112197073-112227301:+|nuORF	REV__ENST00000512790.5_1_5:112197073-112227301:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8057861328125	2	551.785721	1101.55689	0.54021	0.00029808	1.9847	0.0010951	2.5249	0.0013932	551.7860797119891	64.684	0.48067	64.684	64.454	64.934	0					33	17	4	0	0	0	0.22431	1	16132	16132		20.871	0	1	218170	+		28381	16608	16427	16428	34955	34955					0.010173568620530204
LYARDKWLE	9	Unmodified	_LYARDKWLE_					0	0	0		nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	nc|ENSG00000126457|Q99873-5|PRMT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3321533203125	2	597.319306	1192.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.36	1	58.36	57.86	58.86	0								0	0	0	0.20238	1	14143	14143		21.747	3.6003	1				28382	12689	16428	16429	34956	34956					0.03545103397368621
LYARVLGVAI	10	Unmodified	_LYARVLGVAI_					0	0	0			REV__ENST00000469317.1_1_3:123247245-123301172:-|nuORF	REV__ENST00000469317.1_1_3:123247245-123301172:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7180786132812	2	537.837134	1073.65972	-0.50241	-0.00027022	-0.65984	-0.00035489	-1.1623	-0.0006251	537.8367351263086	34.879	0.38734	34.956	34.78	35.167	0.077377					21	13	2	0	0	0	0.31267	1	6917	6917		14.838	0.93222	1	118700	+		28383	19020	16429	16430	34957	34957					0.12583185645030426
LYASFLRAL	9	Unmodified	_LYASFLRAL_					0	0	0			REV__ENST00000475046.5_1_1:185270368-185270791:-|nuORF	REV__ENST00000475046.5_1_1:185270368-185270791:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7560424804688	2	527.30821	1052.60187	0.70484	0.00037167	-3.8869	-0.0020496	-3.1821	-0.0016779	527.8064072218835	55.619	0.74385	55.69	55.188	55.932	0.070885					39	27	2	0	0	0	0.21905	1	13290	13290		16.942	4.4107	1	111720	+		28384	21401	16430	16431	34958	34958					0.07766923719623264
LYATVTHNV	9	Unmodified	_LYATVTHNV_					0	0	0		nc|ENSG00000198022|A6NJ88|SAGE2P;ENSG00000181433|ENST00000370709|SAGE1	nc|ENSG00000198022|A6NJ88|SAGE2P	nc|ENSG00000198022|A6NJ88|SAGE2P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8040466308594	2	509.271824	1016.5291	0.26565	0.00013529	-1.6873	-0.0008593	-1.4217	-0.00072401	509.7707027425508	76.96	0.17242	77.015	76.862	77.035	0.055412					6	5	2	0	0	0	0.25202	1	19802	19802		3.5965	0	1	163130			28385	12902	16431	16432	34959	34959					0.02149169926178729
LYAVVENVPPL	11	Unmodified	_LYAVVENVPPL_					0	0	0		nc|ENSG00000067182|P19438-3|TNFRSF1A;ENST00000536717.5_1_12:6438480-6440154:-|nuORF;nc|ENSG00000067182|P19438-2|TNFRSF1A;ENSG00000067182|ENST00000162749|TNFRSF1A	nc|ENSG00000067182|P19438-3|TNFRSF1A	nc|ENSG00000067182|P19438-3|TNFRSF1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.783447265625	2	607.344989	1212.67542	0.75129	0.00045629	-0.76562	-0.00046499	-0.014327	-8.7013E-06	607.3444956510871	54.558	0.5164	54.558	54.348	54.864	0					43	18	3	0	0	0	0.33119	1	12977	12977		5.7319	0	1	588970			28386	860	16432	16433	34960	34960					0.07759427371433958
LYAWRPLF	8	Unmodified	_LYAWRPLF_					0	0	0		Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|144|1|anti-sense	Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|144|1|anti-sense	Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|144|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2769775390625	2	533.297645	1064.58074	0.55107	0.00029389	-0.11837	-6.3125E-05	0.43271	0.00023076	533.7995948168037	71.664	0.30157	71.664	71.582	71.884	0					12	10	2	0	0	0	0.34147	1	18238	18238		11.114	2.5212	1	266590			28387	12362	16433	16434	34961	34961					0.05102958410748215
LYAWRPLF	8	Unmodified	_LYAWRPLF_					0	0	0		Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|144|1|anti-sense	Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|144|1|anti-sense	Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|144|1|anti-sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	533.297645	1064.58074	0.55747	0.0002973	-3.2696	-0.0017437	-2.7121	-0.0014464	533.2948940104326	71.938	0.22266	71.911	71.845	72.068	-0.027275	0.12333	-0.0027605	NaN	17.087	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70646			28388	12362	16433	16434							0.05102958410748215
LYAYIQKLT	9	Unmodified	_LYAYIQKLT_					0	0	0		nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD	nc|ENSG00000153707|P23468-3|PTPRD	nc|ENSG00000153707|P23468-3|PTPRD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3455810546875	2	556.82115	1111.62775	0.65773	0.00036624	-0.73911	-0.00041155	-0.081382	-4.5315E-05	556.8207963218427	47.511	0.34658	47.555	47.373	47.72	0.04332					20	12	2	0	0	0	0.24311	1	10811	10811		7.2892	0	1	266960			28389	5083	16434	16435	34962	34962					0.07639773171217712
LYAYIQKLT	9	Unmodified	_LYAYIQKLT_					0	0	0		nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD	nc|ENSG00000153707|P23468-3|PTPRD	nc|ENSG00000153707|P23468-3|PTPRD	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	556.82115	1111.62775	0.56301	0.00031349	-1.2076	-0.00067243	-0.64462	-0.00035894	556.8202903999917	47.595	0.38655	47.595	47.411	47.797	0	0.013652	-0.00032962	NaN	7.2892	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228070			28390	5083	16434	16435							0.07639773171217712
LYAYIQKLT	9	Unmodified	_LYAYIQKLT_					0	0	0		nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD	nc|ENSG00000153707|P23468-3|PTPRD	nc|ENSG00000153707|P23468-3|PTPRD	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	556.82115	1111.62775	0.51593	0.00028728	-0.86602	-0.00048222	-0.35009	-0.00019494	556.8206113603852	47.547	0.398	47.595	47.374	47.772	0.04752	0.013104	5.0808E-05	NaN	7.2892	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260760			28391	5083	16434	16435							0.07639773171217712
LYCDETIDPF	10	Unmodified	_LYCDETIDPF_					0	0	0			REV__ENSG00000115750|ENST00000263663|TAF1B	REV__ENSG00000115750|ENST00000263663|TAF1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.2662353515625	2	608.265547	1214.51654	0.51555	0.00031359	0.59769	0.00036355	1.1132	0.00067715	608.2660023975138	53.339	0.5587	53.339	53.09	53.648	0					55	20	4	0	0	0	0.38233	1	12606	12606		6.7232	0.51738	1	692140	+		28392	14894	16435	16436	34963	34963					-0.08213654319047237
LYCFKSKSYT	10	Unmodified	_LYCFKSKSYT_					0	0	0			REV__nc|ENSG00000070010|Q92890-1|UFD1	REV__nc|ENSG00000070010|Q92890-1|UFD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8695068359375	2	620.307549	1238.60055	0.34831	0.00021606	0.98742	0.0006125	1.3357	0.00082856	620.307981542262	92.853	0.1636	92.853	92.753	92.917	0.00047302					20	12	2	0	0	0	0.31691	1	24698	24698		9.3831	2.66	1	70854	+		28393	22894	16436	16437	34964	34964					-0.009210784314518605
LYCHEYFKDCP	11	Unmodified	_LYCHEYFKDCP_					0	0	0		ENSG00000188015|ENST00000368713|S100A3	ENSG00000188015|ENST00000368713|S100A3	ENSG00000188015|ENST00000368713|S100A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.25701904296875	3	473.202024	1416.58424	0.22469	0.00010632	-0.1854	-8.7731E-05	0.039292	1.8593E-05	473.20192922509665	57.151	0.94537	57.23	56.678	57.623	0.078674					51	34	3	0	0	0	0.3325	1	13881	13881		4.1166	1.2733	1	478840			28394	7725	16437	16438	34965	34965					-0.10738527659873398
LYCHEYFKDCP	11	Unmodified	_LYCHEYFKDCP_					0	0	0		ENSG00000188015|ENST00000368713|S100A3	ENSG00000188015|ENST00000368713|S100A3	ENSG00000188015|ENST00000368713|S100A3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	473.202024	1416.58424	0.23722	0.00011225	-0.35123	-0.0001662	-0.11401	-5.3952E-05	473.20181585857125	57.361	0.51483	57.361	57.09	57.605	0	0.040249	-0.00027275	NaN	4.1166	47	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	623020			28395	7725	16437	16438							-0.10738527659873398
LYCHEYFKDCP	11	Unmodified	_LYCHEYFKDCP_					0	0	0		ENSG00000188015|ENST00000368713|S100A3	ENSG00000188015|ENST00000368713|S100A3	ENSG00000188015|ENST00000368713|S100A3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	473.202024	1416.58424	0.087331	4.1325E-05	-0.02967	-1.404E-05	0.057661	2.7285E-05	473.2019935817163	57.389	0.51361	57.372	57.117	57.631	-0.0172	0.050768	0.00018374	NaN	4.1166	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	534700			28396	7725	16437	16438							-0.10738527659873398
LYCLLTEIAEE	11	Unmodified	_LYCLLTEIAEE_					0	0	0			REV__ENSG00000160957|ENST00000617875|RECQL4	REV__ENSG00000160957|ENST00000617875|RECQL4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.88507080078125	3	432.884578	1295.63191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.717	1	17.6	17.1	18.1	-0.11739								0	0	0	0.366	1	1716	1716		4.7159	0.59929	1		+		28397	16927	16438	16439	34966	34966					-0.004085501880354059
LYCVSADFKY	10	Unmodified	_LYCVSADFKY_					0	0	0		ENST00000238961.8_1_10:102690801-102697226:+|nuORF	ENST00000238961.8_1_10:102690801-102697226:+|nuORF	ENST00000238961.8_1_10:102690801-102697226:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.787109375	2	604.78645	1207.55835	0.55139	0.00033347	0.63435	0.00038364	1.1857	0.00071712	604.7867882195775	74.15	1.4083	74.15	73.604	75.012	0					82	48	2	0	0	0	0.33817	1	19022	19022		14.838	1.7958	1	369220			28398	8881	16439	16440	34967	34967					-0.037130538398514545
LYCVSADFKY	10	Unmodified	_LYCVSADFKY_					0	0	0		ENST00000238961.8_1_10:102690801-102697226:+|nuORF	ENST00000238961.8_1_10:102690801-102697226:+|nuORF	ENST00000238961.8_1_10:102690801-102697226:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.787109375	2	604.78645	1207.55835	0.37573	0.00022724	0.58863	0.000356	0.96437	0.00058324	604.7866779503889	74.299	1.5235	74.269	73.636	75.16	-0.030655					74	54	2	0	0	0	0.3641	1	19031	19031		10.074	0	1	604920			28399	8881	16439	16440	34968	34968					-0.037130538398514545
LYCYFQHF	8	Unmodified	_LYCYFQHF_					0	0	0			REV__ENSG00000179387|ENST00000323570|ELMOD2	REV__ENSG00000179387|ENST00000323570|ELMOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3343505859375	2	560.74967	1119.48479	0.70633	0.00039607	1.2467	0.00069907	1.953	0.0010951	560.749838526793	77.747	0.90135	77.802	77.378	78.28	0.05542					53	32	2	0	0	0	0.34147	1	20091	20091		11.114	5.8838	1	173330	+		28400	18072	16440	16441	34969	34969					-0.07017557491644766
LYCYMDICS	9	Unmodified	_LYCYMDICS_					0	0	0		ENST00000481445.1_1_X:77158242-77160802:+|nuORF	ENST00000481445.1_1_X:77158242-77160802:+|nuORF	ENST00000481445.1_1_X:77158242-77160802:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2584838867188	2	555.718864	1109.42317	0.30689	0.00017054	1.4208	0.00078957	1.7277	0.00096011	555.7185579708763	68.53	0.49706	68.602	68.408	68.905	0.071938					31	18	2	0	0	0	0.25417	1	17327	17327		8.5933	4.264	1	298520			28401	11031	16441	16442	34970	34970					-0.12715993297479145
LYCYMDICS	9	Unmodified	_LYCYMDICS_					0	0	0		ENST00000481445.1_1_X:77158242-77160802:+|nuORF	ENST00000481445.1_1_X:77158242-77160802:+|nuORF	ENST00000481445.1_1_X:77158242-77160802:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.25830078125	2	555.718864	1109.42317	0.30926	0.00017186	2.1338	0.0011858	2.443	0.0013576	555.7185854598665	68.676	0.52495	68.657	68.396	68.921	-0.01915					36	18	3	0	0	0	0.25417	1	17349	17349		8.5933	5.312	1	269050			28402	11031	16441	16442	34971	34971					-0.12715993297479145
LYDDNLFCHL	10	Unmodified	_LYDDNLFCHL_					0	0	0		ENSG00000135249|ENST00000257700|RINT1;ENST00000474123.1_1_7:105190513-105195680:+|nuORF	ENSG00000135249|ENST00000257700|RINT1	ENSG00000135249|ENST00000257700|RINT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5905456542969	3	418.193746	1251.55941	-0.25642	-0.00010723	-3.0132	-0.0012601	-3.2696	-0.0013673	418.52545952354654	25.35	0.11375	25.318	25.265	25.378	-0.031408					5	3	2	0	0	0	0.32123	1	4017	4017		0.69767	0	1	10398			28403	3855	16442	16443	34972	34972					-0.05630839470950377
LYDEDKLFY	9	Unmodified	_LYDEDKLFY_					0	0	0			REV__ENSG00000214367|ENST00000443786|HAUS3	REV__ENSG00000214367|ENST00000443786|HAUS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.2896728515625	2	603.289879	1204.56521	0.45368	0.0002737	-1.025	-0.0006184	-0.57137	-0.0003447	603.2889152586167	67.309	0.57008	67.309	67.022	67.592	0					46	19	3	0	0	0	0.14076	1	16879	16879		32.305	4.6767	1	302140	+		28404	19060	16443	16444	34973	34973					-0.028894176876065103
LYDFVVEET	9	Unmodified	_LYDFVVEET_					0	0	0		ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3028564453125	2	557.76878	1113.52301	0.44081	0.00024587	0.041711	2.3265E-05	0.48252	0.00026913	557.7686227211998	85.896	0.45268	85.887	85.758	86.211	-0.0090027					25	16	2	0	0	0	0.21905	1	22572	22572		23.148	2.6948	1	141360			28405	6285	16444	16445	34974	34974					-0.029213930959940626
LYDGLDWLS	9	Unmodified	_LYDGLDWLS_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000463733.5_1_7:127230086-127231350:+|nuORF	ENSG00000004059|ENST00000000233|ARF5	ENSG00000004059|ENST00000000233|ARF5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2634887695312	2	541.263665	1080.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.892	1	92.981	92.481	93.481	0.089195								0	0	0	0.24715	1	24721	24721		7.2892	0	1				28406	306	16445	16446	34975	34975					-0.02425956030560883
LYDIILKNF	9	Unmodified	_LYDIILKNF_					0	0	0		ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.8290405273438	2	569.828975	1137.6434	0.33053	0.00018834	0.14903	8.4922E-05	0.47956	0.00027327	569.8290239235743	72.343	1.6649	72.343	72.048	73.713	0					174	60	5	0	0	0	1.7377E-16	5	18421	18421;18470;18518;18569;18625		206.75	117.79	1	5356900			28407	1413	16446	16447	34976;34977;34978;34979;34980	34976					0.08008059688290814
LYDIILKNF	9	Unmodified	_LYDIILKNF_					0	0	0		ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.8291625976562	2	569.828975	1137.6434	0.52354	0.00029833	-0.13692	-7.8018E-05	0.38662	0.00022031	569.8288796214666	72.315	1.7179	72.372	72.057	73.775	0.056572					197	62	5	0	0	0	1.7377E-16	3	18444	18396;18444;18490		206.75	106.95	1	6365500			28408	1413	16446	16447	34981;34982;34983	34982					0.08008059688290814
LYDIILKNF	9	Unmodified	_LYDIILKNF_					0	0	0		ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.829345703125	2	569.828975	1137.6434	0.36563	0.00020835	0.14306	8.1518E-05	0.50869	0.00028986	569.8290324132166	72.426	1.7385	72.398	72.092	73.831	-0.027275					163	62	4	0	0	0	1.7377E-16	6	18463	18418;18463;18506;18549;18604;18696		206.75	106.95	1	6494800			28409	1413	16446	16447	34984;34985;34986;34987;34988;34989	34985					0.08008059688290814
LYDIVFKHF	9	Unmodified	_LYDIVFKHF_					0	0	0		ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100	ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.321533203125	2	591.321317	1180.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.134	1	60.134	59.634	60.634	0								0	0	0	0.018587	1	14687	14687		70.332	22.583	1				28410	855;12581	16447	16448	34990	34990					0.04499192891103121
LYDIVFKHF	9	Unmodified	_LYDIVFKHF_					0	0	0		ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100	ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.3209228515625	2	591.321317	1180.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.935	1	60.03	59.53	60.53	0.095093								0	0	0	0.018587	1	14619	14619		70.332	22.583	1				28411	855;12581	16447	16448	34991	34991					0.04499192891103121
LYDIVFKHF	9	Unmodified	_LYDIVFKHF_					0	0	0		ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100	ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.3215942382812	2	591.321317	1180.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.081	1	60.07	59.57	60.57	-0.011486								0	0	0	0.013058	1	14663	14663		75.761	39.634	1				28412	855;12581	16447	16448	34992	34992					0.04499192891103121
LYDLNEQPD	9	Unmodified	_LYDLNEQPD_					0	0	0			REV__ENSG00000176994|ENST00000406438|SMCR8	REV__ENSG00000176994|ENST00000406438|SMCR8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.250244140625	2	553.753661	1105.49277	0.53298	0.00029514	-2.3726	-0.0013138	-1.8396	-0.0010187	553.7530118816953	85.933	1.0867	85.933	85.484	86.571	0					67	42	2	0	0	0	0.24467	1	22705	22705		17.113	0	1	796080	+		28413	17965	16448	16449	34993	34993					-0.055757517611937146
LYDLVYRF	8	Unmodified	_LYDLVYRF_					0	0	0			REV__ENSG00000183783|ENST00000360029|KCTD8	REV__ENSG00000183783|ENST00000360029|KCTD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7920532226562	2	544.792392	1087.57023	0.63845	0.00034782	-0.2774	-0.00015113	0.36105	0.0001967	544.7921746643051	73.358	1.1987	73.329	72.684	73.882	-0.029305					96	43	3	0	0	0	0.29134	1	18697	18697		26.341	0.94196	1	325070	+		28414	18284	16449	16450	34994	34994					0.0299493096565584
LYDNRITTI	9	Unmodified	_LYDNRITTI_					0	0	0		nc|ENSG00000184347|O75094-2|SLIT3;nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3;ENST00000519486.5_1_5:168179958-168216668:-|nuORF	nc|ENSG00000184347|O75094-2|SLIT3	nc|ENSG00000184347|O75094-2|SLIT3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.822021484375	2	554.803488	1107.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.41	1	52.461	51.961	52.961	0.050575								0	0	0	0.16935	1	12301	12301		30.225	1.738	1				28415	7445	16450	16451	34995	34995					0.0429311064342528
LYDNRITTI	9	Unmodified	_LYDNRITTI_					0	0	0		nc|ENSG00000184347|O75094-2|SLIT3;nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3;ENST00000519486.5_1_5:168179958-168216668:-|nuORF	nc|ENSG00000184347|O75094-2|SLIT3	nc|ENSG00000184347|O75094-2|SLIT3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.8218994140625	2	554.803488	1107.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.796	1	52.795	52.295	53.295	-0.00080872								0	0	0	0.21726	1	12412	12412		16.942	1.0951	1				28416	7445	16450	16451	34996	34996					0.0429311064342528
LYDPKQVV	8	Unmodified	_LYDPKQVV_					0	0	0			REV__ENSG00000095574|ENST00000368886|IKZF5	REV__ENSG00000095574|ENST00000368886|IKZF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2711486816406	2	481.271293	960.528032	-0.37482	-0.00018039	0.055964	2.6934E-05	-0.31885	-0.00015346	481.271060708428	59.896	0.68125	59.991	59.714	60.395	0.095089					42	24	2	0	0	0	0.43043	1	14585	14585		12.532	12.532	1	606340	+		28417	14103	16451	16452	34997	34997					0.04618955557282334
LYDPKQVV	8	Unmodified	_LYDPKQVV_					0	0	0			REV__ENSG00000095574|ENST00000368886|IKZF5	REV__ENSG00000095574|ENST00000368886|IKZF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2711181640625	2	481.271293	960.528032	0.11877	5.7161E-05	-0.29856	-0.00014369	-0.17978	-8.6525E-05	481.27099578657663	59.972	0.58403	59.961	59.714	60.298	-0.011486					37	20	2	0	0	0	0.41097	1	14649	14649		18.135	2.2878	1	525340	+		28418	14103	16451	16452	34998	34998					0.04618955557282334
LYDPVISKL	9	Unmodified	_LYDPVISKL_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.308349609375	2	524.307875	1046.6012	0.63958	0.00033534	-0.43718	-0.00022922	0.2024	0.00010612	524.307845052345	57.27	0.66174	57.27	56.744	57.405	0					39	24	2	0	0	0	0.0076724	1	13824	13824		96.936	55.096	1	2091700			28419	7708	16452	16453	34999	34999					0.07976084279880524
LYDPVISKL	9	Unmodified	_LYDPVISKL_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3082275390625	2	524.307875	1046.6012	0.46604	0.00024435	-0.16041	-8.4107E-05	0.30563	0.00016024	524.3079454433586	57.095	0.57933	57.174	56.756	57.336	0.078674					35	21	2	0	0	0	0.044909	1	13789	13789		78.06	43.659	1	2241300			28420	7708	16452	16453	35000	35000					0.07976084279880524
LYDPVISKL	9	Unmodified	_LYDPVISKL_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.3082885742188	2	524.307875	1046.6012	0.36347	0.00019057	0.1867	9.7886E-05	0.55017	0.00028846	524.3080101871069	57.322	0.46996	57.305	56.946	57.416	-0.017197					31	16	2	0	0	0	0.020591	1	13779	13779		78.06	34.202	1	2009600			28421	7708	16452	16453	35001	35001					0.07976084279880524
LYDRGKELN	9	Unmodified	_LYDRGKELN_					0	0	0		DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant;ENSG00000197653|ENST00000673944|DNAH10;nc|ENSG00000197653|Q8IVF4|DNAH10	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8392333984375	2	554.293288	1106.57202	0.72881	0.00040398	1.9962	0.0011065	2.725	0.0015105	554.2943997982035	56.396	0.71423	56.475	56.221	56.935	0.078671					44	26	3	0	0	0	0.21389	1	13566	13566		9.3831	0	1	696190			28422	267	16453	16454	35002	35002					0.022999399836407974
LYDSETKNANS	11	Unmodified	_LYDSETKNANS_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.7867431640625	2	621.285857	1240.55716	0.57272	0.00035582	-0.74187	-0.00046092	-0.16915	-0.00010509	621.2857605358706	78.72	0.6875	78.72	78.415	79.103	0					55	27	3	0	0	0	0.38187	2	20431	20431;20473		13.615	2.2062	1	204030			28423	4065	16454	16455	35003;35004	35003					-0.05349596675023349
LYDSETKNANS	11	Unmodified	_LYDSETKNANS_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.2852172851562	2	621.285857	1240.55716	0.31386	0.000195	-0.19186	-0.0001192	0.122	7.5796E-05	621.2859880841543	78.718	0.62476	78.776	78.39	79.015	0.058151					51	24	3	0	0	0	0.38187	1	20375	20375		13.615	1.0833	1	252260			28424	4065	16454	16455	35005	35005					-0.05349596675023349
LYDSETKNANS	11	Unmodified	_LYDSETKNANS_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.2854614257812	2	621.285857	1240.55716	0.54895	0.00034105	-0.47454	-0.00029482	0.074411	4.623E-05	621.2857958869641	78.809	0.72858	78.778	78.398	79.127	-0.030434					62	29	3	0	0	0	0.38187	3	20382	20382;20432;20478		13.615	1.0833	1	279780			28425	4065	16454	16455	35006;35007;35008	35006					-0.05349596675023349
LYDSLRLLAP	10	Unmodified	_LYDSLRLLAP_					0	0	0			REV__nc|ENSG00000166736|P46098-3|HTR3A	REV__nc|ENSG00000166736|P46098-3|HTR3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.7716674804688	2	580.837331	1159.66011	-0.63661	-0.00036977	0.04957	2.8792E-05	-0.58704	-0.00034097	580.8375402657658	35.123	0.27185	35.199	35.017	35.288	0.075306					14	9	2	0	0	0	0.318	1	6966	6966		7.2892	2.5332	1	122750	+		28426	17335	16455	16456	35009	35009					0.08666560574238247
LYDSVILLK	9	Unmodified	_LYDSVILLK_					0	0	0		ENSG00000211448|ENST00000438257|DIO2;nc|ENSG00000211448|Q92813-2|DIO2;ENST00000438257.8_2_14:80669457-80677836:-|nuORF	ENSG00000211448|ENST00000438257|DIO2	ENSG00000211448|ENST00000438257|DIO2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3112182617188	2	532.323525	1062.6325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.252	1	52.252	51.752	52.752	0								0	0	0	0.24522	1	12254	12254		7.9102	0	1				28427	8326	16456	16457	35010	35010					0.10368657313983931
LYDTIFQIF	9	Unmodified	_LYDTIFQIF_					0	0	0		ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4;nc|ENSG00000137757|P51878-3|CASP5;ENSG00000137757|ENST00000260315|CASP5;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000137757|P51878-5|CASP5	ENSG00000196954|ENST00000444739|CASP4	ENSG00000196954|ENST00000444739|CASP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.30615234375	2	580.305332	1158.59611	-0.13005	-7.5471E-05	1.3807	0.00080121	1.2506	0.00072574	580.3065149849898	99.887	0.31818	99.887	99.673	99.991	0					74	42	2	0	0	0	0.24848	1	26690	26690		9.3831	3.1773	1	137250			28428	7918	16457	16458	35011	35011					0.02315780417256974
LYDTIFQIF	9	Unmodified	_LYDTIFQIF_					0	0	0		ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4;nc|ENSG00000137757|P51878-3|CASP5;ENSG00000137757|ENST00000260315|CASP5;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000137757|P51878-5|CASP5	ENSG00000196954|ENST00000444739|CASP4	ENSG00000196954|ENST00000444739|CASP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3065185546875	2	580.305332	1158.59611	0.086308	5.0085E-05	1.0397	0.00060331	1.126	0.0006534	580.3063059404423	99.792	0.37068	99.831	99.645	100.02	0.039001					84	46	2	0	0	0	0.051692	2	26679	26679;26701		52.268	12.311	1	202620			28429	7918	16457	16458	35012;35013	35012					0.02315780417256974
LYDTIFQIF	9	Unmodified	_LYDTIFQIF_					0	0	0		ENSG00000196954|ENST00000444739|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000196954|P49662-4|CASP4;nc|ENSG00000137757|P51878-3|CASP5;ENSG00000137757|ENST00000260315|CASP5;nc|ENSG00000137757|P51878-2|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000137757|P51878-5|CASP5	ENSG00000196954|ENST00000444739|CASP4	ENSG00000196954|ENST00000444739|CASP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3062133789062	2	580.305332	1158.59611	0.23722	0.00013766	0.75808	0.00043992	0.99531	0.00057758	580.3060590874396	99.931	0.36475	99.924	99.736	100.1	-0.006897					80	49	2	0	0	0	0.066761	1	26744	26744		56.177	23.872	1	179670			28430	7918	16457	16458	35014	35014					0.02315780417256974
LYDVSGPPQF	10	Unmodified	_LYDVSGPPQF_					0	0	0		ENST00000303538.12_1_4:39824880-39824973:-|nuORF	ENST00000303538.12_1_4:39824880-39824973:-|nuORF	ENST00000303538.12_1_4:39824880-39824973:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7763061523438	2	561.776939	1121.53933	0.28333	0.00015917	-3.1337	-0.0017605	-2.8504	-0.0016013	561.7753931488783	67.635	0.44363	67.635	67.398	67.842	0					28	15	2	0	0	0	0.24105	1	17000	17000		27.629	2.9549	1	266260			28431	9249	16458	16459	35015	35015					-0.016582671392370685
LYDVSGPPQF	10	Unmodified	_LYDVSGPPQF_					0	0	0		ENST00000303538.12_1_4:39824880-39824973:-|nuORF	ENST00000303538.12_1_4:39824880-39824973:-|nuORF	ENST00000303538.12_1_4:39824880-39824973:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7847290039062	2	561.776939	1121.53933	0.1679	9.4324E-05	-2.8628	-0.0016083	-2.6949	-0.0015139	561.7753408672288	67.624	0.67446	67.607	67.292	67.966	-0.016296					29	22	2	0	0	0	0.18562	1	17048	17048		34.402	4.9646	1	173010			28432	9249	16458	16459	35016	35016					-0.016582671392370685
LYDVSGPPQF	10	Unmodified	_LYDVSGPPQF_					0	0	0		ENST00000303538.12_1_4:39824880-39824973:-|nuORF	ENST00000303538.12_1_4:39824880-39824973:-|nuORF	ENST00000303538.12_1_4:39824880-39824973:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.776939	1121.53933	0.42288	0.00023756	-3.519	-0.0019769	-3.0961	-0.0017393	561.775365963546	67.493	0.47591	67.571	67.326	67.802	0.078041	-0.033309	-0.00040934	NaN	34.402	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272110			28433	9249	16458	16459							-0.016582671392370685
LYEAAAKAPF	10	Unmodified	_LYEAAAKAPF_					0	0	0			REV__ENSG00000116819|ENST00000373235|TFAP2E	REV__ENSG00000116819|ENST00000373235|TFAP2E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.81005859375	2	540.78985	1079.56515	0.89778	0.00048551	-0.94355	-0.00051026	-0.045768	-2.4751E-05	540.7895115904921	54.809	0.21676	54.793	54.655	54.872	-0.015919					9	7	2	0	0	0	0.31267	1	13015	13015		14.838	0	1	296620	+		28434	14942	16459	16460	35017	35017					0.028546271030108983
LYEADFVLF	9	Unmodified	_LYEADFVLF_					0	0	0		ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.7846069335938	2	558.784233	1115.55391	0.26821	0.00014987	-0.11749	-6.5654E-05	0.15072	8.4219E-05	558.7843050532931	91.828	0.99119	91.828	91.527	92.518	0					128	70	3	0	0	0	0.027237	4	24410	24410;24453;24459;24470		61.357	29.052	1	359890			28435	3954	16460	16461	35018;35019;35020;35021	35018					0.0007580500889616815
LYEADFVLF	9	Unmodified	_LYEADFVLF_					0	0	0		ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.7849731445312	2	558.784233	1115.55391	0.34004	0.00019001	0.020965	1.1715E-05	0.36101	0.00020173	558.7843663202749	91.722	0.94177	91.813	91.537	92.479	0.090675					116	64	3	0	0	0	0.019896	5	24365	24319;24365;24400;24416;24467		64.236	34.012	1	410940			28436	3954	16460	16461	35022;35023;35024;35025;35026	35023					0.0007580500889616815
LYEADFVLF	9	Unmodified	_LYEADFVLF_					0	0	0		ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	ENSG00000136213|ENST00000618655|CHST12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.7841796875	2	558.784233	1115.55391	0.42534	0.00023767	-0.041002	-2.2912E-05	0.38434	0.00021476	558.7841715172722	91.842	0.94824	91.842	91.492	92.441	0.00046539					125	64	3	0	0	0	0.0085732	4	24392	24392;24437;24464;24486		81.613	43.462	1	559640			28437	3954	16460	16461	35027;35028;35029;35030	35027					0.0007580500889616815
LYEAVPCALL	10	Unmodified	_LYEAVPCALL_					0	0	0			REV__ENST00000417455.1_1_10:44101451-44101670:-|nuORF	REV__ENST00000417455.1_1_10:44101451-44101670:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.2919311523438	2	546.293911	1090.57327	0.50617	0.00027651	1.5833	0.00086494	2.0895	0.0011415	546.29310310568	59.857	4.0939	59.846	59.312	63.405	-0.011486					272	149	4	0	0	0	0.21885	1	14774	14774		34.102	3.8776	1	65600000	+		28438	20829	16461	16462	35031	35031					0.031604380281578415
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.7576904296875	2	611.757889	1221.50123	0.47984	0.00029355	-0.75108	-0.00045948	-0.27123	-0.00016593	611.7573895808229	56.579	1.0827	56.579	56.267	57.35	0					92	40	3	0	0	0	0.0072369	2	13553	13553;13605		85.642	20.406	1	2395300	+		28439	19330	16462	16463	35032;35033	35032					-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.7579345703125	2	611.757889	1221.50123	0.63501	0.00038847	-0.68164	-0.000417	-0.046631	-2.8527E-05	611.7573813719981	56.474	1.0647	56.553	56.247	57.311	0.078674					86	39	3	0	0	0	0.0072369	2	13523	13523;13573		85.642	20.406	1	2343200	+		28440	19330	16462	16463	35034;35035	35034					-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.2425537109375	2	611.757889	1221.50123	0.074387	4.5507E-05	-1.1462	-0.00070122	-1.0719	-0.00065572	611.7577869742528	61.13	0.39761	61.227	61.14	61.538	0.096985					23	14	2	0	0	0	0.25219	1	15065	15065		26.268	9.1552	1	520100	+		28441	19330	16462	16463	35036	35036					-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.7584228515625	2	611.757889	1221.50123	0.19085	0.00011676	0.11606	7.1002E-05	0.30691	0.00018776	611.7582699181308	61.135	0.53613	61.125	60.888	61.424	-0.0094566					26	19	2	0	0	0	0.10145	1	14994	14994		47.749	11.622	1	758450	+		28442	19330	16462	16463	35037	35037					-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	611.757889	1221.50123	0.47984	0.00029355	-0.75108	-0.00045948	-0.27123	-0.00016593	611.7573895808229	56.579	1.0827	56.579	56.267	57.35	0	-0.053103	0.00011893	NaN	85.642	92	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2395300	+		28443	19330	16462	16463							-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	611.757889	1221.50123	0.63501	0.00038847	-0.68164	-0.000417	-0.046631	-2.8527E-05	611.7573813719981	56.474	1.0647	56.553	56.247	57.311	0.078674	-0.079168	0.00020388	NaN	85.642	86	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2343200	+		28444	19330	16462	16463							-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	611.757889	1221.50123	0.074387	4.5507E-05	-1.1462	-0.00070122	-1.0719	-0.00065572	611.7577869742528	61.13	0.39761	61.227	61.14	61.538	0.096985	0.05088	-0.00097775	NaN	47.749	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	520100	+		28445	19330	16462	16463							-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	611.757889	1221.50123	0.73256	0.00044815	-1.0733	-0.0006566	-0.34074	-0.00020845	611.7571161005783	56.783	1.0659	56.764	56.456	57.522	-0.019081	0.13227	-0.00027533	NaN	85.642	97	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2688400	+		28446	19330	16462	16463							-0.10066521116232252
LYECTGQFDF	10	Unmodified	_LYECTGQFDF_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	611.757889	1221.50123	0.19085	0.00011676	0.11606	7.1002E-05	0.30691	0.00018776	611.7582699181308	61.135	0.53613	61.125	60.888	61.424	-0.0094566	-0.05088	0.0005667	NaN	47.749	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	758450	+		28447	19330	16462	16463							-0.10066521116232252
LYEEAFTVF	9	Unmodified	_LYEEAFTVF_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7745971679688	2	559.773865	1117.53318	0.26961	0.00015092	1.1784	0.00065966	1.448	0.00081058	559.7743051865664	81.212	0.96597	81.212	80.904	81.87	0					111	43	4	0	0	0	0.006189	2	21106	21106;21148		85.272	56.785	1	1263900			28448	923	16463	16464	35038;35039	35038					-0.02088785370756341
LYEFETPEGF	10	Unmodified	_LYEFETPEGF_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.1897888183594	3	411.188767	1230.54447	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.781	1	38.881	38.381	39.381	0.099407								0	0	0	0.36108	1	8111	8111		10.151	2.5416	1		+		28449	16252	16464	16465	35040	35040					-0.06158008067291121
LYEFIEQPI	9	Unmodified	_LYEFIEQPI_					0	0	0			REV__nc|ENSG00000156983|P55201-4|BRPF1	REV__nc|ENSG00000156983|P55201-4|BRPF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2540283203125	2	576.30279	1150.59103	0.54753	0.00031554	0.31527	0.00018169	0.8628	0.00049723	576.3030038065477	20.482	0.555	20.429	20.254	20.809	-0.05291					37	19	3	0	0	0	0.26145	1	2642	2642		2.0598	0	1	142620	+		28450	16764	16465	16466	35041	35041					0.021754765546575072
LYEHKFIN	8	Unmodified	_LYEHKFIN_					0	0	0		nc|ENSG00000185518|Q7L1I2-2|SV2B;ENSG00000185518|ENST00000394232|SV2B	nc|ENSG00000185518|Q7L1I2-2|SV2B	nc|ENSG00000185518|Q7L1I2-2|SV2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2969970703125	2	532.282192	1062.54983	0.51123	0.00027212	-0.32814	-0.00017467	0.18309	9.7455E-05	532.2820996518175	49.833	0.75696	49.833	49.434	50.191	0					44	27	2	0	0	0	0.33441	1	11421	11421		26.884	7.4447	1	526200			28451	7540	16466	16467	35042	35042					0.021057603058579843
LYEHNFAFF	9	Unmodified	_LYEHNFAFF_					0	0	0		ENSG00000060642|ENST00000674202|PIGV;PIGV|p.F235Lfs*3|1|0.22|ENSG00000060642|chr1:26794737-26794737|T/-|frameshift_variant	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.279541015625	2	594.279649	1186.54475	0.44978	0.0002673	0.1279	7.6011E-05	0.57768	0.00034331	594.2794995549755	68.185	0.93057	68.185	67.911	68.841	0					67	34	3	0	0	0	0.016723	3	17145	17145;17191;17225		69.105	47.568	1	1061600			28452	748	16467	16468	35043;35044;35045	35043					-0.041065435567816166
LYEHNFAFF	9	Unmodified	_LYEHNFAFF_					0	0	0		ENSG00000060642|ENST00000674202|PIGV;PIGV|p.F235Lfs*3|1|0.22|ENSG00000060642|chr1:26794737-26794737|T/-|frameshift_variant	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7815551757812	2	594.279649	1186.54475	0.47246	0.00028077	0.23313	0.00013854	0.70559	0.00041931	594.2795202378569	68.052	0.73212	68.13	67.864	68.596	0.078041					62	26	3	0	0	0	0.023967	2	17089	17089;17134		62.573	37.173	1	953120			28453	748	16467	16468	35046;35047	35046					-0.041065435567816166
LYEHNFAFF	9	Unmodified	_LYEHNFAFF_					0	0	0		ENSG00000060642|ENST00000674202|PIGV;PIGV|p.F235Lfs*3|1|0.22|ENSG00000060642|chr1:26794737-26794737|T/-|frameshift_variant	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2799072265625	2	594.279649	1186.54475	0.45885	0.00027269	-0.064611	-3.8397E-05	0.39424	0.00023429	594.2794053719128	68.203	0.77368	68.184	67.906	68.68	-0.019157					58	27	3	0	0	0	0.012386	2	17166	17122;17166		75.761	48.132	1	1196900			28454	748	16467	16468	35048;35049	35049					-0.041065435567816166
LYEIDPIFFS	10	Unmodified	_LYEIDPIFFS_					0	0	0			REV__ENSG00000173545|ENST00000308683|ZNF622	REV__ENSG00000173545|ENST00000308683|ZNF622	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3165893554688	2	622.315897	1242.61724	0.18432	0.00011471	0.5177	0.00032217	0.70202	0.00043688	622.3161022287416	42.159	0.53049	42.244	42.034	42.565	0.085197					33	14	3	0	0	0	0.34887	1	9163	9163		10.074	0	1	453050	+		28455	17787	16468	16469	35050	35050					0.005637457261400414
LYEIEKPRL	9	Unmodified	_LYEIEKPRL_					0	0	0			REV__ENST00000216085.11_2_22:29663515-29663793:-|nuORF	REV__ENST00000216085.11_2_22:29663515-29663793:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.771728515625	2	580.837331	1159.66011	-0.72443	-0.00042078	-0.11494	-6.6761E-05	-0.83937	-0.00048754	581.3382394315137	35.05	0.36324	35.128	34.92	35.283	0.077377					18	12	2	0	0	0	0.25879	1	6948	6948		4.756	0	1	104930	+		28456	19408	16469	16470	35051	35051					0.0866656057421551
LYEKDIQLF	9	Unmodified	_LYEKDIQLF_					0	0	0		ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24171013-24171163:+|nuORF	ENSG00000166971|ENST00000394657|AKTIP	ENSG00000166971|ENST00000394657|AKTIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.815673828125	2	584.816064	1167.61758	0.50239	0.0002938	-0.28412	-0.00016616	0.21827	0.00012765	584.8157925793681	60.888	1.1767	60.888	60.607	61.784	0					90	43	3	0	0	0	6.549E-06	2	14941	14941;14993		155.95	74.064	1	4872300			28457	6136	16470	16471	35052;35053	35052					0.04047165445990686
LYEKDIQLF	9	Unmodified	_LYEKDIQLF_					0	0	0		ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24171013-24171163:+|nuORF	ENSG00000166971|ENST00000394657|AKTIP	ENSG00000166971|ENST00000394657|AKTIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.8162231445312	2	584.816064	1167.61758	0.41422	0.00024224	0.077578	4.5369E-05	0.4918	0.00028761	584.8159656764387	60.847	1.2022	60.944	60.639	61.841	0.096985					94	43	4	0	0	0	2.973E-07	1	14917	14917		168.54	86.647	1	5142700			28458	6136	16470	16471	35054	35054					0.04047165445990686
LYEKDIQLF	9	Unmodified	_LYEKDIQLF_					0	0	0		ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24171013-24171163:+|nuORF	ENSG00000166971|ENST00000394657|AKTIP	ENSG00000166971|ENST00000394657|AKTIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8162841796875	2	584.816064	1167.61758	0.5241	0.0003065	-0.1484	-8.6787E-05	0.3757	0.00021972	584.8158723809611	60.953	1.1036	60.944	60.596	61.699	-0.0094566					95	40	4	0	0	0	6.5985E-11	2	14931	14931;14982		181.69	96.049	1	5609100			28459	6136	16470	16471	35055;35056	35055					0.04047165445990686
LYELLTGMALS	11	Unmodified	_LYELLTGMALS_					0	0	0		nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1;ENSG00000198208|ENST00000557413|RPS6KL1	nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1	nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3372192382812	2	605.823032	1209.63151	0.22064	0.00013367	-1.4218	-0.00086133	-1.2011	-0.00072766	605.8218849205521	69.516	0.40642	69.494	69.267	69.673	-0.022087					18	14	2	0	0	0	0.22366	1	17586	17586		29.082	2.1979	1	96063			28460	8051	16471	16472	35057	35057					0.035080748827795105
LYELVKMLL	9	Unmodified	_LYELVKMLL_					0	0	0			REV__ENSG00000171951|ENST00000305409|SCG2	REV__ENSG00000171951|ENST00000305409|SCG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.781005859375	2	561.335578	1120.6566	0.34873	0.00019576	1.2415	0.00069692	1.5903	0.00089268	561.3366311674242	89.042	0.1028	89.041	88.976	89.078	-0.00080872					5	3	2	0	0	0	0.24913	1	23533	23533		12.532	4.6214	1	32371	+		28461	17682	16472	16473	35058	35058					0.10110174476017164
LYENDLDEF	9	Unmodified	_LYENDLDEF_					0	0	0		nc|ENSG00000126500|Q9NZU1-1|FLRT1;ENSG00000126500|ENST00000682287|FLRT1	nc|ENSG00000126500|Q9NZU1-1|FLRT1	nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.2546997070312	2	579.253494	1156.49243	0.40938	0.00023713	1.5827	0.00091681	1.9921	0.0011539	579.2547197633197	63.301	0.33673	63.396	63.174	63.511	0.095722					15	11	2	0	0	0	0.23007	1	15681	15681		19.257	3.1079	1	208770			28462	3275	16473	16474	35059	35059					-0.07955171481034995
LYENFISEF	9	Unmodified	_LYENFISEF_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;ENST00000527047.5_1_11:237024-247462:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.7847900390625	2	581.276772	1160.53899	0.26105	0.00015174	-1.1865	-0.00068966	-0.92541	-0.00053792	581.2761411771596	81.699	0.54042	81.699	81.354	81.894	0					39	22	3	0	0	0	0.23784	1	21309	21309		13.906	2.2658	1	140480			28463	7544	16474	16475	35060	35060					-0.034856868590850354
LYENFISEF	9	Unmodified	_LYENFISEF_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;ENST00000527047.5_1_11:237024-247462:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.7847900390625	2	581.276772	1160.53899	0.011854	6.8907E-06	-1.5665	-0.00091059	-1.5547	-0.0009037	581.2760210175081	81.562	0.44957	81.631	81.4	81.849	0.068985					30	19	2	0	0	0	0.25622	1	21287	21287		7.2892	0	1	139820			28464	7544	16474	16475	35061	35061					-0.034856868590850354
LYENGSFYF	9	Unmodified	_LYENGSFYF_					0	0	0		nc|ENSG00000111726|Q8NFW8-2|CMAS;ENSG00000111726|ENST00000229329|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2590942382812	2	570.25584	1138.49713	0.32195	0.00018359	-0.21555	-0.00012292	0.10639	6.0671E-05	570.2557042426981	72.112	1.1619	72.112	71.827	72.989	0					83	42	3	0	0	0	0.010453	1	18389	18389		78.728	38.771	1	677240			28465	2385	16475	16476	35062	35062					-0.06658242547609916
LYENLGFVR	9	Unmodified	_LYENLGFVR_					0	0	0		nc|ENSG00000139977|Q147X3-2|NAA30;ENSG00000139977|ENST00000556492|NAA30	nc|ENSG00000139977|Q147X3-2|NAA30	nc|ENSG00000139977|Q147X3-2|NAA30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8130493164062	2	555.800749	1109.58694	0.04681	2.6017E-05	-1.1157	-0.00062009	-1.0689	-0.00059407	555.7995828751236	59.646	0.44567	59.646	59.56	60.006	0					22	15	2	0	0	0	0.22188	1	14606	14606		20.454	2.3073	1	216080			28466	4276	16476	16477	35063	35063					0.0365343185162601
LYENLGFVR	9	Unmodified	_LYENLGFVR_					0	0	0		nc|ENSG00000139977|Q147X3-2|NAA30;ENSG00000139977|ENST00000556492|NAA30	nc|ENSG00000139977|Q147X3-2|NAA30	nc|ENSG00000139977|Q147X3-2|NAA30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.81298828125	2	555.800749	1109.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.534	1	59.629	59.129	60.129	0.095093								0	0	0	0.14393	1	14497	14497		36.127	12.106	1				28467	4276	16476	16477	35064	35064					0.0365343185162601
LYEPLVEL	8	Unmodified	_LYEPLVEL_					0	0	0			REV__UBR1|p.S597Vfs*6|1|0.11|ENSG00000159459|chr15:43043276-43043277|-/T|frameshift_variant	REV__UBR1|p.S597Vfs*6|1|0.11|ENSG00000159459|chr15:43043276-43043277|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2973937988281	2	488.273501	974.532449	0.5118	0.0002499	-0.25188	-0.00012299	0.25991	0.00012691	488.2733252283052	78.997	0.53605	78.997	78.725	79.261	0					35	22	2	0	0	0	0.29855	1	20498	20498		32.117	3.6301	1	184880	+		28468	16855	16477	16478	35065	35065					0.04416419980191222
LYEPLVEL	8	Unmodified	_LYEPLVEL_					0	0	0			REV__UBR1|p.S597Vfs*6|1|0.11|ENSG00000159459|chr15:43043276-43043277|-/T|frameshift_variant	REV__UBR1|p.S597Vfs*6|1|0.11|ENSG00000159459|chr15:43043276-43043277|-/T|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	488.273501	974.532449	0.47348	0.00023119	0.10185	4.9728E-05	0.57533	0.00028092	488.2735143583765	78.923	0.5442	78.982	78.71	79.254	0.058151	-0.0078953	0.00020735	NaN	32.117	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134960	+		28469	16855	16477	16478							0.04416419980191222
LYEPLVEL	8	Unmodified	_LYEPLVEL_					0	0	0			REV__UBR1|p.S597Vfs*6|1|0.11|ENSG00000159459|chr15:43043276-43043277|-/T|frameshift_variant	REV__UBR1|p.S597Vfs*6|1|0.11|ENSG00000159459|chr15:43043276-43043277|-/T|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	488.273501	974.532449	0.5956	0.00029082	-0.11553	-5.6409E-05	0.48008	0.00023441	488.27341801331437	79.019	0.55917	78.99	78.745	79.305	-0.028923	0.00072321	-4.9203E-06	NaN	32.117	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148790	+		28470	16855	16477	16478							0.04416419980191222
LYEQAFQLL	9	Unmodified	_LYEQAFQLL_					0	0	0		nc|ENSG00000102871|Q15628-2|TRADD;ENSG00000102871|ENST00000345057|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8032836914062	2	562.802957	1123.59136	0.25994	0.0001463	0.84233	0.00047406	1.1023	0.00062036	562.80331752742	81.468	1.5548	81.468	81.178	82.733	0					97	61	2	0	0	0	0.0019475	2	21216	21216;21272		110.67	45.44	1	5423500			28471	1789	16478	16479	35066;35067	35066					0.03450896274512161
LYEQAFQLL	9	Unmodified	_LYEQAFQLL_					0	0	0		nc|ENSG00000102871|Q15628-2|TRADD;ENSG00000102871|ENST00000345057|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3431396484375	2	562.802957	1123.59136	0.46474	0.00026156	-0.30686	-0.0001727	0.15788	8.8856E-05	562.801491272535	83.473	0.43278	83.456	83.246	83.679	-0.016823					24	17	2	0	0	0	0.25123	1	21878	21878		12.241	0	1	109500			28472	1789	16478	16479	35068	35068					0.03450896274512161
LYEQFKFF	8	Unmodified	_LYEQFKFF_					0	0	0		ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B;ENST00000590271.5_1_18:76847676-76954399:+|nuORF	ENSG00000166377|ENST00000426216|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2867431640625	2	561.286943	1120.55933	0.41277	0.00023168	-0.73162	-0.00041065	-0.31885	-0.00017896	561.286667122609	58.495	0.5613	58.586	58.314	58.875	0.091301					48	19	3	0	0	0	0.33245	1	14190	14190		19.439	0.18201	1	506420			28473	6070	16479	16480	35069	35069					0.003875285913636617
LYERALDI	8	Unmodified	_LYERALDI_					0	0	0		NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant;ENSG00000113971|ENST00000337331|NPHP3;nc|ENSG00000113971|Q7Z494-2|NPHP3;ENST00000471702.2_2_3:132363653-132416205:-|nuORF;ENST00000493732.5_1_3:132401545-132403622:-|nuORF	NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant	NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7740783691406	2	496.7742	991.533846	0.56286	0.00027961	-0.18026	-8.9551E-05	0.38259	0.00019006	496.7739992823934	63.842	0.77373	63.832	63.591	64.364	-0.0095329					58	27	3	0	0	0	0.1951	1	15865	15865		43.858	7.3521	1	643000			28474	2541	16480	16481	35070	35070					0.037740540689469526
LYERWQLT	8	Unmodified	_LYERWQLT_					0	0	0		ENST00000471426.1_1_3:29322798-29476407:+|nuORF	ENST00000471426.1_1_3:29322798-29476407:+|nuORF	ENST00000471426.1_1_3:29322798-29476407:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3109130859375	2	554.792924	1107.57129	0.20178	0.00011195	-2.3914	-0.0013267	-2.1896	-0.0012148	555.2930221934616	73.505	0.30124	73.559	73.362	73.663	0.053833					12	10	2	0	0	0	0.43727	1	18798	18798		10.183	0	1	58285			28475	10876	16481	16482	35071	35071					0.021811453345662812
LYESLFYF	8	Unmodified	_LYESLFYF_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8321533203125	2	541.265676	1080.5168	0.57762	0.00031265	2.8586	0.0015473	3.4362	0.0018599	541.2673551137112	70.181	0.61029	70.159	69.886	70.496	-0.022087					35	21	3	0	0	0	0.33245	1	17720	17720		19.439	3.5918	1	128240	+		28476	15342	16482	16483	35072	35072					-0.02023866536865171
LYETAGLALF	10	Unmodified	_LYETAGLALF_					0	0	0			REV__ENSG00000124657|ENST00000244623|OR2B6	REV__ENSG00000124657|ENST00000244623|OR2B6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3154296875	2	549.297507	1096.58046	0.64175	0.00035251	0.49928	0.00027426	1.141	0.00062677	549.297940430848	64.147	0.54205	64.239	64.066	64.608	0.09288					31	19	2	0	0	0	0.35558	1	16019	16019		11.64	1.4569	1	86423	+		28477	15244	16483	16484	35073	35073					0.03603493900232024
LYEWLMEL	8	Unmodified	_LYEWLMEL_					0	0	0			REV__ENST00000467099.6_1_17:18003545-18010551:+|nuORF	REV__ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.788818359375	2	548.772811	1095.53107	0.84581	0.00046416	-2.2864	-0.0012547	-1.4406	-0.00079055	548.7711887134941	77.927	0.67386	77.982	77.738	78.412	0.05542					46	24	3	0	0	0	0.33916	1	20161	20161		26.341	0.073138	1	413470	+		28478	14603	16484	16485	35074	35074					-0.012875373802216927
LYEYGYTFS	9	Unmodified	_LYEYGYTFS_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2888793945312	2	571.755672	1141.49679	0.29188	0.00016688	1.0443	0.00059706	1.3361	0.00076395	571.7559113234504	66.732	0.79644	66.732	66.396	67.193	0					43	27	2	0	0	0	0.22596	1	16724	16724		21.747	3.6117	1	348760	+		28479	18413	16485	16486	35075	35075					-0.06829662267477943
LYEYGYTFS	9	Unmodified	_LYEYGYTFS_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2887573242188	2	571.755672	1141.49679	0.37021	0.00021167	1.3559	0.00077522	1.7261	0.00098689	571.7554692669195	66.594	0.80704	66.678	66.441	67.248	0.083832					44	28	2	0	0	0	0.24311	1	16671	16671		16.942	2.3606	1	279850	+		28480	18413	16485	16486	35076	35076					-0.06829662267477943
LYFDHSTGF	9	Unmodified	_LYFDHSTGF_					0	0	0		ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3001098632812	2	543.748182	1085.48181	0.86179	0.00046859	-1.7209	-0.00093575	-0.85915	-0.00046716	543.7469845945045	54.906	0.35195	54.97	54.805	55.157	0.063202					19	12	2	0	0	0	0.17611	1	13062	13062		34.102	13.649	1	545260			28481	5817	16486	16487	35077	35077					-0.05751109344805627
LYFDHSTGF	9	Unmodified	_LYFDHSTGF_					0	0	0		ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	543.748182	1085.48181	0.77215	0.00041985	-1.5063	-0.00081903	-0.73411	-0.00039917	543.7471334961846	55.026	0.38347	55.026	54.837	55.221	0	-0.0065611	-0.00026631	NaN	34.102	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403090			28482	5817	16486	16487							-0.05751109344805627
LYFDHSTGF	9	Unmodified	_LYFDHSTGF_					0	0	0		ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.748182	1085.48181	0.75805	0.00041219	-0.061731	-3.3566E-05	0.69632	0.00037862	543.7479881622771	55.121	0.45916	55.102	55.025	55.484	-0.019077	0.069422	0.0013046	NaN	34.102	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321450			28483	5817	16486	16487							-0.05751109344805627
LYFDRPRF	8	Unmodified	_LYFDRPRF_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2944946289062	2	557.295633	1112.57671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.999	1	95.081	94.581	95.581	0.082779								0	0	0	0.37183	1	25359	25359		4.756	1.1595	1		+		28484	16009	16487	16488	35078	35078					0.024928689170337748
LYFDVDENRF	10	Unmodified	_LYFDVDENRF_					0	0	0			REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB	REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.8754577636719	3	439.875182	1316.60372	0.66235	0.00029135	-0.23458	-0.00010319	0.42777	0.00018817	439.8751886794471	50.253	1.395	50.274	49.989	51.384	0.020695					162	52	5	0	0	0	0.37297	1	11650	11650		8.4443	0	1	3809100	+		28485	16175	16488	16489	35079	35079					-0.041921120531242195
LYFENAMRF	9	Oxidation (M)	_LYFENAM(Oxidation (M))RF_		LYFENAM(1)RF		LYFENAM(130)RF	0	0	1		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-2|ECE1	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.7843017578125	2	603.784241	1205.55393	0.57596	0.00034776	-0.84031	-0.00050737	-0.26435	-0.00015961	603.7837178216744	53.176	0.68848	53.176	52.906	53.595	0					64	25	4	0	0	0	0.00051734	2	12562	12512;12562		128.93	99.851	1	1222500			28486	2786	16489	16490	35080;35081	35081		352			-0.04062518262753656
LYFENAMRF	9	Oxidation (M)	_LYFENAM(Oxidation (M))RF_		LYFENAM(1)RF		LYFENAM(130)RF	0	0	1		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-2|ECE1	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.7842407226562	2	603.784241	1205.55393	0.74238	0.00044824	-0.93415	-0.00056402	-0.19177	-0.00011579	603.7835634420527	53.124	0.72554	53.18	52.913	53.638	0.056259					56	26	3	0	0	0	0.00051734	2	12542	12489;12542		128.93	103.53	1	1246100			28487	2786	16489	16490	35082;35083	35083		352			-0.04062518262753656
LYFENAMRF	9	Oxidation (M)	_LYFENAM(Oxidation (M))RF_		LYFENAM(1)RF		LYFENAM(140)RF	0	0	1		nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF;nc|ENSG00000117298|P42892-2|ECE1	nc|ENSG00000117298|P42892-3|ECE1	nc|ENSG00000117298|P42892-3|ECE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.7841186523438	2	603.784241	1205.55393	0.43408	0.00026209	-0.50036	-0.00030211	-0.066276	-4.0016E-05	603.7838322903822	53.402	0.62791	53.392	53.166	53.794	-0.0096054					61	23	4	0	0	0	0.00010125	2	12567	12567;12620		140.63	111.55	1	1326900			28488	2786	16489	16490	35084;35085	35084		352			-0.04062518262753656
LYFESVRTF	9	Unmodified	_LYFESVRTF_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3013916015625	2	581.300581	1160.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.659	1	60.659	60.159	61.159	0								0	0	0	1.3123E-06	1	14850	14850		128.93	80.587	1				28489	5205	16490	16491	35086	35086					0.012740121317619924
LYFESVRTF	9	Unmodified	_LYFESVRTF_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.3012084960938	2	581.300581	1160.58661	0.71462	0.00041541	-0.30051	-0.00017469	0.4141	0.00024072	581.3007047668513	60.583	0.37299	60.68	60.552	60.925	0.096985					40	12	4	0	0	0	0.0013924	2	14811	14811;14858		117.76	88.679	1	1598200			28490	5205	16490	16491	35087;35088	35087					0.012740121317619924
LYFESVRTF	9	Unmodified	_LYFESVRTF_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.2942504882812	2	581.300581	1160.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.62	1	60.611	60.111	61.111	-0.0094566								0	0	0	0.00036775	1	14830	14830		107.1	54.831	1				28491	5205	16490	16491	35089	35089					0.012740121317619924
LYFESVRTF	9	Unmodified	_LYFESVRTF_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.3004760742188	2	581.300581	1160.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.663	1	60.654	60.154	61.154	-0.0094566								0	0	0	0.00036775	1	14843	14843		107.1	67.15	1				28492	5205	16490	16491	35090	35090					0.012740121317619924
LYFESVRTF	9	Unmodified	_LYFESVRTF_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.3013916015625	2	581.300581	1160.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.831	1	60.821	60.321	61.321	-0.0094566								0	0	0	9.6725E-09	1	14895	14895		140.63	83.162	1				28493	5205	16490	16491	35091	35091					0.012740121317619924
LYFHINQTL	9	Unmodified	_LYFHINQTL_					0	0	0		nc|ENSG00000133193|Q969W3|VCF1;ENSG00000133193|ENST00000405159|FAM104A	nc|ENSG00000133193|Q969W3|VCF1	nc|ENSG00000133193|Q969W3|VCF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.2689208984375	2	574.808574	1147.60259	0.2711	0.00015583	-0.80688	-0.0004638	-0.53578	-0.00030797	574.8082662913909	61.046	1.1278	61.046	60.792	61.92	0					64	41	3	0	0	0	0.0033458	1	14972	14972		99.755	34.52	1	3102800			28494	3699	16491	16492	35092	35092					0.03469718368660324
LYFHINQTL	9	Unmodified	_LYFHINQTL_					0	0	0		nc|ENSG00000133193|Q969W3|VCF1;ENSG00000133193|ENST00000405159|FAM104A	nc|ENSG00000133193|Q969W3|VCF1	nc|ENSG00000133193|Q969W3|VCF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2686767578125	2	574.808574	1147.60259	0.3727	0.00021423	-0.84223	-0.00048412	-0.46953	-0.00026989	574.8081456904727	60.921	1.1721	61.018	60.779	61.952	0.096985					70	42	3	0	0	0	0.0033458	1	14938	14938		110.67	45.44	1	2748500			28495	3699	16491	16492	35093	35093					0.03469718368660324
LYFHINQTL	9	Unmodified	_LYFHINQTL_					0	0	0		nc|ENSG00000133193|Q969W3|VCF1;ENSG00000133193|ENST00000405159|FAM104A	nc|ENSG00000133193|Q969W3|VCF1	nc|ENSG00000133193|Q969W3|VCF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.26806640625	2	574.808574	1147.60259	0.29224	0.00016798	-1.0647	-0.000612	-0.77246	-0.00044402	574.8081784930737	61.017	0.64049	61.007	60.784	61.424	-0.0094566					48	23	3	0	0	0	0.0063009	1	14981	14981		79.596	31.848	1	3242700			28496	3699	16491	16492	35094	35094					0.03469718368660324
LYFHPEQF	8	Unmodified	_LYFHPEQF_					0	0	0			REV__ENSG00000164916|ENST00000328914|FOXK1	REV__ENSG00000164916|ENST00000328914|FOXK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.359130859375	2	540.761092	1079.50763	0.41865	0.00022639	-1.6175	-0.00087466	-1.1988	-0.00064827	540.7602971668161	33.396	0.1966	33.396	33.259	33.456	0					9	6	2	0	0	0	0.34353	1	6457	6457		4.756	0	1	94001	+		28497	17187	16492	16493	35095	35095					-0.028942151025376006
LYFHPEQF	8	Unmodified	_LYFHPEQF_					0	0	0			REV__ENSG00000164916|ENST00000328914|FOXK1	REV__ENSG00000164916|ENST00000328914|FOXK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7820434570312	2	540.761092	1079.50763	0.60823	0.00032891	0.053847	2.9118E-05	0.66207	0.00035802	540.7609099761211	29.961	0.50777	29.961	29.605	30.113	0					25	17	2	0	0	0	0.34218	1	5427	5427		9.3474	0	1	104380	+		28498	17187	16492	16493	35096	35096					-0.028942151025376006
LYFLAWAL	8	Unmodified	_LYFLAWAL_					0	0	0			REV__SLC6A12|p.V232Sfs*17|1|0.34|ENSG00000111181|chr12:200668-200668|C/-|frameshift_variant	REV__SLC6A12|p.V232Sfs*17|1|0.34|ENSG00000111181|chr12:200668-200668|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2550964355469	2	498.781296	995.54804	0.23679	0.00011811	2.6763	0.0013349	2.913	0.001453	498.78395678149514	35.643	0.091534	35.729	35.671	35.762	0.08625					4	2	2	0	0	0	0.33618	1	7140	7140		17.087	0	1	60418	+		28499	14706	16493	16494	35097	35097					0.05008751287891755
LYFLKAVQY	9	Unmodified	_LYFLKAVQY_					0	0	0			REV__ENST00000456732.2_10:48190054-48195746:+|nuORF	REV__ENST00000456732.2_10:48190054-48195746:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.8236694335938	2	572.823692	1143.63283	0.49242	0.00028207	2.3482	0.0013451	2.8406	0.0016272	572.8240050424707	65.876	0.76445	65.876	65.577	66.341	0					70	27	3	0	0	0	0.12846	1	16443	16443		34.102	5.9292	1	1155600	+		28500	21173	16494	16495	35098	35098					0.0667607703385329
LYFLKAVQY	9	Unmodified	_LYFLKAVQY_					0	0	0			REV__ENST00000456732.2_10:48190054-48195746:+|nuORF	REV__ENST00000456732.2_10:48190054-48195746:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.8235473632812	2	572.823692	1143.63283	0.52419	0.00030027	1.0404	0.00059596	1.5646	0.00089623	572.8237391025755	65.738	0.9766	65.827	65.547	66.523	0.088882					59	35	2	0	0	0	0.12846	1	16394	16394		34.102	5.9292	1	1088100	+		28501	21173	16494	16495	35099	35099					0.0667607703385329
LYFLKAVQY	9	Unmodified	_LYFLKAVQY_					0	0	0			REV__ENST00000456732.2_10:48190054-48195746:+|nuORF	REV__ENST00000456732.2_10:48190054-48195746:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	572.823692	1143.63283	0.49242	0.00028207	2.3482	0.0013451	2.8406	0.0016272	572.8240050424707	65.876	0.76445	65.876	65.577	66.341	0	0.022495	0.0016704	NaN	34.102	70	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1155600	+		28502	21173	16494	16495							0.0667607703385329
LYFLKAVQY	9	Unmodified	_LYFLKAVQY_					0	0	0			REV__ENST00000456732.2_10:48190054-48195746:+|nuORF	REV__ENST00000456732.2_10:48190054-48195746:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	572.823692	1143.63283	0.52419	0.00030027	1.0404	0.00059596	1.5646	0.00089623	572.8237391025755	65.738	0.9766	65.827	65.547	66.523	0.088882	-0.025858	0.00017214	NaN	34.102	59	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1088100	+		28503	21173	16494	16495							0.0667607703385329
LYFLKAVQY	9	Unmodified	_LYFLKAVQY_					0	0	0			REV__ENST00000456732.2_10:48190054-48195746:+|nuORF	REV__ENST00000456732.2_10:48190054-48195746:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	572.823692	1143.63283	0.38904	0.00022285	0.6288	0.00036019	1.0178	0.00058304	572.8240903337337	65.868	1.1167	65.857	65.319	66.436	-0.011337	0.0033635	-0.00029939	NaN	34.102	58	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1067200	+		28504	21173	16494	16495							0.0667607703385329
LYFLLMALF	9	Unmodified	_LYFLLMALF_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.808349609375	2	565.819564	1129.62458	0.24863	0.00014068	1.101	0.00062298	1.3497	0.00076366	565.8200079580674	46.113	0.27345	46.178	46.121	46.394	0.065048					11	9	2	0	0	0	0.21902	1	10403	10403		20.871	0	1	305570			28505	5711	16495	16496	35100	35100					0.06494806792875352
LYFLLMALF	9	Unmodified	_LYFLLMALF_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	565.819564	1129.62458	0.16749	9.4771E-05	1.043	0.00059016	1.2105	0.00068493	565.8196977131902	46.119	0.18447	46.178	46.098	46.283	0.059834	0.00024351	-4.7571E-05	NaN	20.871	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297310			28506	5711	16495	16496							0.06494806792875352
LYFLRNPW	8	Unmodified	_LYFLRNPW_					0	0	0			REV__ENST00000552283.5_1_12:102471187-102471274:-|nuORF	REV__ENST00000552283.5_1_12:102471187-102471274:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3545532226562	2	554.800552	1107.58655	0.41653	0.00023109	-1.1787	-0.00065396	-0.7622	-0.00042287	554.8002049399472	91.233	0.32779	91.233	91.165	91.492	0.00046539					35	21	2	0	0	0	0.34185	1	24271	24271		10.183	4.9527	1	325680	+		28507	22217	16496	16497	35101	35101					0.037060569224195206
LYFLTPFL	8	Unmodified	_LYFLTPFL_					0	0	0		ENST00000469741.6_1_19:41256312-41256444:-|nuORF	ENST00000469741.6_1_19:41256312-41256444:-|nuORF	ENST00000469741.6_1_19:41256312-41256444:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2900390625	2	507.288954	1012.56336	0.43514	0.00022074	1.1922	0.00060479	1.6274	0.00082554	507.2896712371766	37.115	0.83057	37.208	37.01	37.84	0.093014					72	30	3	0	0	0	0.28861	1	7631	7631		32.117	5.7757	1	950950			28508	10861	16497	16498	35102	35102					0.05757618085078775
LYFMMFLKS	9	Unmodified	_LYFMMFLKS_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.7952880859375	2	590.300681	1178.58681	0.057166	3.3745E-05	-3.0981	-0.0018288	-3.0409	-0.001795	590.8009775417705	14.355	0.54275	14.25	14.049	14.592	-0.10466					48	18	4	0	0	0	0.26117	1	732	732		2.3027	0	1	155050			28509	6479	16498	16499	35103	35103					0.004659725357669231
LYFPLGYTE	9	Unmodified	_LYFPLGYTE_					0	0	0			REV__NAA20|p.I29L|1|0.16|ENSG00000173418|chr20:20025683-20025683|A/C|missense_variant	REV__NAA20|p.I29L|1|0.16|ENSG00000173418|chr20:20025683-20025683|A/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.2662963867188	2	551.776408	1101.53826	0.73454	0.0004053	3.9864	0.0021996	4.7209	0.0026049	552.2798054595644	77.307	0.3016	77.276	77.154	77.456	-0.031334					11	10	2	0	0	0	0.24913	1	19907	19907		12.532	0	1	89523	+		28510	22872	16499	16500	35104	35104					-0.008444815081702473
LYFPLILTYS	10	Unmodified	_LYFPLILTYS_					0	0	0		ENST00000393585.6_1_4:185550289-185550421:-|nuORF	ENST00000393585.6_1_4:185550289-185550421:-|nuORF	ENST00000393585.6_1_4:185550289-185550421:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2314453125	3	410.565397	1228.67436	0.056417	2.3163E-05	1.1255	0.00046208	1.1819	0.00048524	410.56606352154944	103.17	0.2392	103.17	102.97	103.21	-0.0011139					37	29	2	0	0	0	0.3213	1	27454	27454		0.69767	0	1	4021800			28511	10053	16500	16501	35105	35105					0.06917213002520839
LYFQKCYHF	9	Unmodified	_LYFQKCYHF_					0	0	0		nc|ENSG00000086848|Q9H6U8-4|ALG9;ENSG00000086848|ENST00000616540|ALG9	nc|ENSG00000086848|Q9H6U8-4|ALG9	nc|ENSG00000086848|Q9H6U8-4|ALG9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.5325622558594	3	416.867193	1247.57975	-0.16089	-6.707E-05	0.27142	0.00011315	0.11053	4.6076E-05	416.86720684565853	41.5	0.49493	41.5	41.125	41.62	0					37	18	3	0	0	0	0.259	1	8890	8890		2.7352	0.10396	1	1061400			28512	1288	16501	16502	35106	35106					-0.034136240204816204
LYFRREPA	8	Unmodified	_LYFRREPA_					0	0	0			REV__nc|ENSG00000079616|Q14807-2|KIF22	REV__nc|ENSG00000079616|Q14807-2|KIF22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8193359375	2	526.287808	1050.56106	0.63554	0.00033448	-1.0677	-0.0005619	-0.43213	-0.00022742	526.2872051642564	49.118	0.54375	49.118	48.944	49.488	0					30	19	2	0	0	0	0.32778	1	11338	11338		20.871	0	1	388340	+		28513	13873	16502	16503	35107	35107					0.03780582400008825
LYFRREPA	8	Unmodified	_LYFRREPA_					0	0	0			REV__nc|ENSG00000079616|Q14807-2|KIF22	REV__nc|ENSG00000079616|Q14807-2|KIF22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8193359375	2	526.287808	1050.56106	0.42814	0.00022532	-0.90621	-0.00047693	-0.47807	-0.0002516	526.287345944489	49.208	0.57677	49.253	49.016	49.593	0.044891					30	20	2	0	0	0	0.32778	1	11341	11341		20.871	0	1	493740	+		28514	13873	16502	16503	35108	35108					0.03780582400008825
LYFSDIVGF	9	Unmodified	_LYFSDIVGF_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7620849609375	2	530.771126	1059.5277	0.60267	0.00031988	0.35395	0.00018787	0.95662	0.00050775	530.7712194733764	89.23	0.63783	89.23	89.007	89.645	0					43	33	2	0	0	0	0.12846	2	23618	23573;23618		34.102	0	1	256870			28515	3644	16503	16504	35109;35110	35110					0.00031535837410956447
LYFSDIVGF	9	Unmodified	_LYFSDIVGF_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.76220703125	2	530.771126	1059.5277	0.46048	0.00024441	0.74327	0.00039451	1.2037	0.00063892	530.7713907905317	89.154	0.56525	89.245	88.918	89.483	0.090569					44	27	3	0	0	0	0.11517	2	23574	23527;23574		36.044	0	1	189220			28516	3644	16503	16504	35111;35112	35112					0.00031535837410956447
LYFSDIVGF	9	Unmodified	_LYFSDIVGF_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000101890|ENST00000218006|GUCY2F	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7619018554688	2	530.771126	1059.5277	0.57805	0.00030681	0.50095	0.00026589	1.079	0.0005727	530.771338712543	89.231	0.66838	89.23	88.953	89.621	-0.00080872					46	34	2	0	0	0	0.10197	3	23561	23561;23602;23645		37.974	0	1	261550			28517	3644	16503	16504	35113;35114;35115	35113					0.00031535837410956447
LYFSTVDTF	9	Unmodified	_LYFSTVDTF_					0	0	0		ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.77099609375	2	546.76604	1091.51753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.406	1	75.458	74.958	75.958	0.052361								0	0	0	1.5518E-16	1	19364	19364		171.47	127.06	1				28518	991	16504	16505	35116	35116					-0.024570718878067055
LYFSTVDTF	9	Unmodified	_LYFSTVDTF_					0	0	0		ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.766845703125	2	546.76604	1091.51753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.495	1	75.547	75.047	76.047	0.052361								0	0	0	1.5518E-16	1	19391	19391		171.47	127.06	1				28519	991	16504	16505	35117	35117					-0.024570718878067055
LYFSTVDTF	9	Unmodified	_LYFSTVDTF_					0	0	0		ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.76513671875	2	546.76604	1091.51753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.598	1	75.566	75.066	76.066	-0.031487								0	0	0	5.9551E-24	1	19416	19416		187.93	130.21	1				28520	991	16504	16505	35118	35118					-0.024570718878067055
LYFTALILS	9	Unmodified	_LYFTALILS_					0	0	0		nc|ENSG00000155755|Q96Q45-4|TMEM237;nc|ENSG00000155755|Q96Q45-2|TMEM237;ENSG00000155755|ENST00000409883|TMEM237;nc|ENSG00000155755|Q96Q45-5|TMEM237;nc|ENSG00000155755|Q96Q45-3|TMEM237	nc|ENSG00000155755|Q96Q45-4|TMEM237	nc|ENSG00000155755|Q96Q45-4|TMEM237	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2685546875	2	520.804968	1039.59538	0.44056	0.00022945	1.0375	0.00054033	1.4781	0.00076978	520.8057226992371	37.222	0.46224	37.309	37.062	37.524	0.08741					27	16	2	0	0	0	0.25526	1	7586	7586		4.3292	0	1	253420			28521	5193	16505	16506	35119	35119					0.07716985768252016
LYFTGSAHF	9	Unmodified	_LYFTGSAHF_					0	0	0		ENST00000463515.1_1_10:103339212-103340251:-|nuORF;nc|ENSG00000166169|Q9UGP5-2|POLL;ENSG00000166169|ENST00000370162|POLL	ENST00000463515.1_1_10:103339212-103340251:-|nuORF	ENST00000463515.1_1_10:103339212-103340251:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.316162109375	2	521.753267	1041.49198	0.77995	0.00040694	0.46304	0.00024159	1.243	0.00064853	521.7535272546808	54.996	0.38849	54.98	54.796	55.184	-0.015919					21	14	2	0	0	0	0.12846	1	13082	13082		44.407	19.733	1	500160			28522	6039	16506	16507	35120	35120					-0.027105016195719145
LYFTHGVEI	9	Unmodified	_LYFTHGVEI_					0	0	0			REV__ENSG00000162396|ENST00000371279|PARS2	REV__ENSG00000162396|ENST00000371279|PARS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3032836914062	2	539.782025	1077.5495	0.47464	0.0002562	-0.27918	-0.0001507	0.19546	0.0001055	539.7822970996427	58.029	0.33889	58.029	57.904	58.243	0					19	11	2	0	0	0	0.19839	1	14013	14013		28.487	2.1456	1	207490	+		28523	16976	16507	16508	35121	35121					0.013823405859966442
LYFTHGVEI	9	Unmodified	_LYFTHGVEI_					0	0	0			REV__ENSG00000162396|ENST00000371279|PARS2	REV__ENSG00000162396|ENST00000371279|PARS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	539.782025	1077.5495	0.74128	0.00040013	-0.19728	-0.00010649	0.544	0.00029364	539.7821355988581	58.115	0.45368	58.098	57.901	58.355	-0.0172	0.06144	-1.8555E-05	NaN	28.487	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272850	+		28524	16976	16507	16508							0.013823405859966442
LYFTHSFCF	9	Unmodified	_LYFTHSFCF_					0	0	0			REV__ENST00000484387.1_1_8:139926142-139926241:-|nuORF	REV__ENST00000484387.1_1_8:139926142-139926241:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.7627563476562	2	582.762778	1163.511	0.60028	0.00034982	-1.3556	-0.00078999	-0.75531	-0.00044017	582.7620466099122	74.464	0.47961	74.464	74.286	74.765	0					24	16	2	0	0	0	0.30166	1	19098	19098		8.5933	2.8329	1	455000	+		28525	21531	16508	16509	35122	35122					-0.06421288320166241
LYFTHSFCF	9	Unmodified	_LYFTHSFCF_					0	0	0			REV__ENST00000484387.1_1_8:139926142-139926241:-|nuORF	REV__ENST00000484387.1_1_8:139926142-139926241:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.2683715820312	2	582.762778	1163.511	0.25386	0.00014794	-1.1274	-0.00065698	-0.8735	-0.00050904	582.7621778847009	74.423	0.54139	74.475	74.296	74.838	0.052368					26	18	2	0	0	0	0.24739	1	19043	19043		13.508	4.1604	1	316490	+		28526	21531	16508	16509	35123	35123					-0.06421288320166241
LYFTHSFCF	9	Unmodified	_LYFTHSFCF_					0	0	0			REV__ENST00000484387.1_1_8:139926142-139926241:-|nuORF	REV__ENST00000484387.1_1_8:139926142-139926241:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	582.762778	1163.511	0.60028	0.00034982	-1.3556	-0.00078999	-0.75531	-0.00044017	582.7620466099122	74.464	0.47961	74.464	74.286	74.765	0	-0.034645	-0.00011875	NaN	13.508	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455000	+		28527	21531	16508	16509							-0.06421288320166241
LYFTHSFCF	9	Unmodified	_LYFTHSFCF_					0	0	0			REV__ENST00000484387.1_1_8:139926142-139926241:-|nuORF	REV__ENST00000484387.1_1_8:139926142-139926241:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	582.762778	1163.511	0.48835	0.00028459	-1.2412	-0.00072334	-0.75287	-0.00043875	582.7621402884525	74.588	0.45531	74.557	74.358	74.813	-0.030655	0.058427	1.4557E-05	NaN	13.508	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267200	+		28528	21531	16508	16509							-0.06421288320166241
LYFVIRSR	8	Unmodified	_LYFVIRSR_					0	0	0		ANK1|p.M1066R|1|0.25|ENSG00000029534|chr8:41694722-41694722|A/C|missense_variant	ANK1|p.M1066R|1|0.25|ENSG00000029534|chr8:41694722-41694722|A/C|missense_variant	ANK1|p.M1066R|1|0.25|ENSG00000029534|chr8:41694722-41694722|A/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3133544921875	2	527.313826	1052.6131	0.65746	0.00034669	1.0918	0.00057573	1.7493	0.00092242	527.3142823649866	53.493	0.54803	53.493	53.228	53.776	0					48	20	3	0	0	0	0.28861	1	12678	12678		32.117	0	1	1303200			28529	42	16509	16510	35124	35124					0.08889745813758054
LYFVLVTLF	9	Unmodified	_LYFVLVTLF_					0	0	0			REV__ENSG00000147432|ENST00000289957|CHRNB3	REV__ENSG00000147432|ENST00000289957|CHRNB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3240356445312	2	557.830986	1113.64742	0.39459	0.00022012	0.53339	0.00029754	0.92798	0.00051765	557.8309532834132	90.801	0.53534	90.801	90.509	91.045	0.00039673					93	41	3	0	0	0	0.25879	1	24021	24021		2.0598	2.0598	1	445290	+		28530	13892	16510	16511	35125	35125					0.0951414918199589
LYFYRELS	8	Unmodified	_LYFYRELS_					0	0	0			REV__ENSG00000107719|ENST00000263563|PALD1	REV__ENSG00000107719|ENST00000263563|PALD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.83056640625	2	545.782025	1089.5495	0.53712	0.00029315	-0.28033	-0.000153	0.25679	0.00014015	545.7816927508248	42.433	0.39355	42.525	42.324	42.717	0.091362					21	13	2	0	0	0	0.34046	1	9258	9258		9.3474	1.1919	1	266390	+		28531	14561	16511	16512	35126	35126					0.008303405860033308
LYFYRVVMF	9	Unmodified	_LYFYRVVMF_					0	0	0		ENST00000313349.3_1_2:64861977-64862394:-|nuORF	ENST00000313349.3_1_2:64861977-64862394:-|nuORF	ENST00000313349.3_1_2:64861977-64862394:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.7670593261719	3	413.219455	1236.63654	0.22188	9.1684E-05	1.04	0.00042974	1.2618	0.00052142	413.55478024979453	31.688	0.30462	31.729	31.559	31.864	0.040991					24	10	3	0	0	0	0.25123	1	5937	5937		12.241	1.4411	1	305940			28532	9331	16512	16513	35127	35127					0.027684235360538878
LYGAPGVEF	9	Unmodified	_LYGAPGVEF_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;nc|ENSG00000073350|Q6P1M3-3|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7425231933594	2	476.742368	951.470183	0.33864	0.00016144	0.35892	0.00017111	0.69756	0.00033256	476.7423295361831	66.243	0.76298	66.243	65.981	66.744	0					62	26	4	0	0	0	0.0084096	2	16577	16577;16628		81.864	0	1	637560			28533	1001	16513	16514	35128;35129	35128					-0.007493063681295098
LYGAPGVEF	9	Unmodified	_LYGAPGVEF_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;nc|ENSG00000073350|Q6P1M3-3|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7424011230469	2	476.742368	951.470183	0.42898	0.00020451	-0.10145	-4.8364E-05	0.32753	0.00015615	476.7422542481729	66.11	0.79416	66.194	65.916	66.71	0.083832					62	28	3	0	0	0	0.0084096	3	16511	16476;16511;16563		81.864	0	1	541490			28534	1001	16513	16514	35130;35131;35132	35131					-0.007493063681295098
LYGAPGVEF	9	Unmodified	_LYGAPGVEF_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;nc|ENSG00000073350|Q6P1M3-3|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.7424621582031	2	476.742368	951.470183	0.27787	0.00013247	0.24399	0.00011632	0.52186	0.00024879	476.74236871190783	66.228	0.84872	66.214	65.89	66.739	-0.013588					59	30	3	0	0	0	0.0040585	2	16546	16546;16607		93.883	0	1	576300			28535	1001	16513	16514	35133;35134	35133					-0.007493063681295098
LYGATQSESIF	11	Unmodified	_LYGATQSESIF_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.2982788085938	2	608.298236	1214.58192	0.43816	0.00026653	-0.10016	-6.0925E-05	0.338	0.00020561	608.2983896313774	52.471	0.69385	52.471	52.049	52.743	0					38	24	2	0	0	0	0.36257	1	12314	12314		16.149	0	1	419320	+		28536	15914	16514	16515	35135	35135					-0.016789168016885014
LYGAVKHG	8	Unmodified	_LYGAVKHG_					0	0	0			REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.23236083984375	2	422.73742	843.460287	0.23296	9.8482E-05	0.31115	0.00013153	0.54411	0.00023002	422.737413104574	47.807	1.0602	47.851	47.611	48.672	0.04332					85	39	3	0	0	0	0.42446	1	11049	11049		14.582	0	1	5987900	+		28537	17839	16515	16516	35136	35136					0.03229550417142946
LYGCYFAQHGG	11	Unmodified	_LYGCYFAQHGG_					0	0	0		ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.2660522460938	2	608.266216	1214.51788	0.49894	0.00030349	-0.38011	-0.00023121	0.11884	7.2285E-05	608.2660415643261	53.298	0.65498	53.354	53.111	53.766	0.056259					50	24	3	0	0	0	0.44192	1	12592	12592		5.7319	0.97584	1	787130			28538	5162	16516	16517	35137	35137					-0.08079975439613918
LYGDRRRKN	9	Unmodified	_LYGDRRRKN_					0	0	0			REV__ENSG00000113905|ENST00000232003|HRG	REV__ENSG00000113905|ENST00000232003|HRG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3328857421875	2	589.33107	1176.64759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.107	1	26.084	25.584	26.584	-0.022238								0	0	0	0.26513	1	4252	4252		1.4819	0	1		+		28539	14822	16517	16518	35138	35138					0.06632961954574057
LYGEGFAVYQ	10	Unmodified	_LYGEGFAVYQ_					0	0	0		ENST00000403633.6_1_7:99017160-99017205:+|nuORF	ENST00000403633.6_1_7:99017160-99017205:+|nuORF	ENST00000403633.6_1_7:99017160-99017205:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.2802734375	2	573.776939	1145.53933	0.52485	0.00030115	-1.6422	-0.00094226	-1.1174	-0.00064112	573.776660778897	78.913	0.48294	78.971	78.867	79.35	0.058151					29	22	2	0	0	0	0.31267	1	20468	20468		14.838	2.5976	1	143180			28540	10206	16518	16519	35139	35139					-0.027622671392464326
LYGEIELQK	9	Unmodified	_LYGEIELQK_					0	0	0		ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.7662963867188	2	546.800414	1091.58628	0.35801	0.00019576	-1.5218	-0.00083211	-1.1638	-0.00063635	546.7992245498244	45.846	0.44556	45.906	45.763	46.209	0.059834					31	15	3	0	0	0	0.2322	1	10288	10288		20.454	2.0805	1	398060			28541	4614	16519	16520	35140	35140					0.04414592411899321
LYGESLYIW	9	Unmodified	_LYGESLYIW_					0	0	0			REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2899169921875	2	572.289682	1142.56481	0.18378	0.00010517	0.66667	0.00038153	0.85045	0.0004867	572.2897731242072	69.925	1.2805	69.925	69.566	70.847	0					153	46	4	0	0	0	0.029841	2	17680	17672;17680		60.39	14.728	1	935780	+		28542	21509	16520	16521	35141;35142	35142					-0.0007679261682369543
LYGESLYIW	9	Unmodified	_LYGESLYIW_					0	0	0			REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2892456054688	2	572.289682	1142.56481	0.39381	0.00022537	-0.76791	-0.00043947	-0.3741	-0.00021409	572.2894798449069	82.705	0.96535	82.705	82.313	83.279	0					76	36	3	0	0	0	0.24581	1	21640	21640		16.942	2.3606	1	254220	+		28543	21509	16520	16521	35143	35143					-0.0007679261682369543
LYGESLYIW	9	Unmodified	_LYGESLYIW_					0	0	0			REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.8238525390625	2	572.289682	1142.56481	0.35994	0.00020599	-0.21602	-0.00012363	0.14392	8.2363E-05	572.2896003953254	75.017	1.2764	75.017	74.6	75.877	0					88	45	3	0	0	0	0.21905	1	19373	19373		23.148	8.5667	1	321100	+		28544	21509	16520	16521	35144	35144					-0.0007679261682369543
LYGESLYIW	9	Unmodified	_LYGESLYIW_					0	0	0			REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3532104492188	2	572.289682	1142.56481	0.28017	0.00016034	0.24551	0.0001405	0.52568	0.00030084	572.2895756399856	72.881	1.9692	72.881	71.582	73.551	0					108	71	2	0	0	0	0.23783	1	18504	18504		18.135	4.2289	1	186430	+		28545	21509	16520	16521	35145	35145					-0.0007679261682369543
LYGESLYIW	9	Unmodified	_LYGESLYIW_					0	0	0			REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2891845703125	2	572.289682	1142.56481	0.23473	0.00013434	0.70974	0.00040618	0.94448	0.00054051	572.2897709924225	69.979	1.1553	69.956	69.591	70.747	-0.022079					112	41	3	0	0	0	0.072844	2	17631	17631;17677		44.407	2.5674	1	1015800	+		28546	21509	16520	16521	35146;35147	35146					-0.0007679261682369543
LYGESLYIW	9	Unmodified	_LYGESLYIW_					0	0	0			REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7562866210938	2	572.289682	1142.56481	0.57939	0.00033158	-0.67317	-0.00038525	-0.093785	-5.3672E-05	572.2890523101729	78.941	0.37093	78.911	78.63	79.001	-0.030434					23	15	2	0	0	0	0.24913	1	20419	20419		12.532	1.7076	1	123020	+		28547	21509	16520	16521	35148	35148					-0.0007679261682369543
LYGESLYIW	9	Unmodified	_LYGESLYIW_					0	0	0			REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	REV__ENST00000482777.5_1_12:111892794-111892908:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7216796875	2	572.289682	1142.56481	0.3565	0.00020402	-0.78289	-0.00044804	-0.4264	-0.00024402	572.289503445216	79.613	0.45509	79.584	79.348	79.804	-0.028931					27	17	2	0	0	0	0.23783	1	20633	20633		18.135	4.6271	1	117760	+		28548	21509	16520	16521	35149	35149					-0.0007679261682369543
LYGEVIRTLPS	11	Unmodified	_LYGEVIRTLPS_					0	0	0		nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.8558959960938	2	624.353345	1246.69214	0.44375	0.00027706	0.25859	0.00016145	0.70235	0.00043851	624.3542877069212	89.243	0.91367	89.243	88.672	89.586	0					81	43	3	0	0	0	0.40826	1	23583	23583		10.151	0.076642	1	211590			28549	6313	16521	16522	35150	35150					0.07865928257388077
LYGEVIRTLPS	11	Unmodified	_LYGEVIRTLPS_					0	0	0		nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.8555297851562	2	624.353345	1246.69214	0.12464	7.782E-05	0.96106	0.00060004	1.0857	0.00067786	624.3541940446436	89.162	0.82761	89.253	88.675	89.503	0.090561					80	39	3	0	0	0	0.40826	1	23531	23531		10.151	0.76745	1	150260			28550	6313	16521	16522	35151	35151					0.07865928257388077
LYGFVWIQD	9	Unmodified	_LYGFVWIQD_					0	0	0		nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2	nc|ENSG00000107331|Q9BZC7|ABCA2	nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7725219726562	2	570.78985	1139.56515	0.73379	0.00041884	-0.69995	-0.00039953	0.033835	1.9313E-05	570.7893853419184	78.316	0.72865	78.285	77.957	78.686	-0.030434					66	27	3	0	0	0	0.27532	1	20324	20324		12.532	1.7076	1	490950			28551	2121	16522	16523	35152	35152					0.0009462710304433131
LYGGCSPHRH	10	Unmodified	_LYGGCSPHRH_					0	0	0		ENST00000483722.1_1_6:41159156-41159447:-|nuORF	ENST00000483722.1_1_6:41159156-41159447:-|nuORF	ENST00000483722.1_1_6:41159156-41159447:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8104858398438	2	563.764175	1125.5138	0.97771	0.0005512	2.4342	0.0013723	3.412	0.0019235	563.7655898244006	56.093	0.48817	56.093	55.882	56.37	0					30	17	2	0	0	0	0.318	1	13403	13403		7.2892	7.2892	1	847860			28552	11064	16523	16524	35153	35153					-0.043940201426721615
LYGGHLIA	8	Unmodified	_LYGGHLIA_					0	0	0			REV__ENSG00000101438|ENST00000217420|SLC32A1	REV__ENSG00000101438|ENST00000217420|SLC32A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.23822021484375	2	422.239796	842.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.741	1	69.807	69.307	70.307	0.066048								0	0	0	0.3683	1	17634	17634		6.3541	0	1		+		28553	14271	16524	16525	35154	35154					0.037504345598904365
LYGHQTFFM	9	Unmodified	_LYGHQTFFM_					0	0	0		ENSG00000090402|ENST00000264382|SI	ENSG00000090402|ENST00000264382|SI	ENSG00000090402|ENST00000264382|SI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.8435668945312	2	572.268227	1142.5219	0.27651	0.00015824	1.3343	0.0007636	1.6109	0.00092184	572.7697312825746	40.57	0.077477	40.67	40.617	40.694	0.099403					4	2	2	0	0	0	0.25202	1	8659	8659		10.824	2.9138	1	57496			28554	1376	16525	16526	35155	35155					-0.04365885945912851
LYGIKLNEL	9	Unmodified	_LYGIKLNEL_					0	0	0			REV__ENST00000591671.1_1_18:44660807-44662674:-|nuORF	REV__ENST00000591671.1_1_18:44660807-44662674:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3112182617188	2	531.813325	1061.6121	0.53849	0.00028638	-2.2893	-0.0012175	-1.7508	-0.00093111	531.8133909776504	66.078	0.98877	66.161	65.916	66.905	0.083832					67	35	2	0	0	0	0.10197	1	16658	16658		37.974	10.345	1	1540800	+		28555	22567	16526	16527	35156	35156					0.08375486654176711
LYGIKLNEL	9	Unmodified	_LYGIKLNEL_					0	0	0			REV__ENST00000591671.1_1_18:44660807-44662674:-|nuORF	REV__ENST00000591671.1_1_18:44660807-44662674:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.311279296875	2	531.813325	1061.6121	0.49696	0.00026429	-1.7917	-0.00095284	-1.2947	-0.00068855	531.8134308675492	66.248	1.004	66.234	65.919	66.923	-0.013588					65	36	2	0	0	0	0.079752	1	16674	16674		41.84	8.3947	1	1450900	+		28556	22567	16526	16527	35157	35157					0.08375486654176711
LYGITADFWV	10	Unmodified	_LYGITADFWV_					0	0	0			REV__ENST00000447721.6_1_12:57881873-57905922:+|nuORF	REV__ENST00000447721.6_1_12:57881873-57905922:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.372314453125	2	592.802957	1183.59136	0.56993	0.00033786	-0.080513	-4.7728E-05	0.48942	0.00029013	592.8029155339485	88.589	0.35468	88.589	88.38	88.735	0					25	17	2	0	0	0	0.3156	1	23394	23394		10.824	0	1	86273	+		28557	17355	16527	16528	35158	35158					0.00690896274500119
LYGKIAEAF	9	Unmodified	_LYGKIAEAF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.279296875	2	506.279118	1010.54368	0.44767	0.00022665	-0.0060962	-3.0864E-06	0.44158	0.00022356	506.27909378870186	51.339	1.2281	51.339	50.713	51.941	0					141	45	5	0	0	0	9.2305E-05	2	11992	11944;11992		142.08	94.331	1	9494100			28558	3090;12135	16528	16529	35159;35160	35160					0.038832420743119656
LYGKIAEAF	9	Unmodified	_LYGKIAEAF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2792663574219	2	506.279118	1010.54368	0.31762	0.0001608	0.12648	6.4033E-05	0.4441	0.00022484	506.2791510689823	51.338	1.3512	51.384	50.63	51.981	0.046574					130	49	4	0	0	0	0.00045155	2	11982	11936;11982		129.77	82.024	1	9477800			28559	3090;12135	16528	16529	35161;35162	35162					0.038832420743119656
LYGKIAEAF	9	Unmodified	_LYGKIAEAF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2792053222656	2	506.279118	1010.54368	0.34239	0.00017334	0.11071	5.605E-05	0.4531	0.00022939	506.27913631107987	51.45	1.1573	51.46	50.887	52.044	0.0095634					127	39	5	0	0	0	1.2283E-05	3	12009	11962;12009;12060		155.03	98.849	1	9680400			28560	3090;12135	16528	16529	35163;35164;35165	35164					0.038832420743119656
LYGKQFPLI	9	Unmodified	_LYGKQFPLI_					0	0	0			REV__ENST00000550813.5_1_12:100594629-100599999:+|nuORF	REV__ENST00000550813.5_1_12:100594629-100599999:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.818603515625	2	539.81841	1077.62227	0.36373	0.00019635	-0.053565	-2.8916E-05	0.31017	0.00016743	539.8183018857089	93.559	1.0049	93.559	93.161	94.166	0					248	84	4	0	0	0	0.28128	3	24825	24825;24902;24940		11.64	3.7301	1	1260800	+		28561	13799	16529	16530	35166;35167;35168	35166					0.0865609437942112
LYGKQFPLI	9	Unmodified	_LYGKQFPLI_					0	0	0			REV__ENST00000550813.5_1_12:100594629-100599999:+|nuORF	REV__ENST00000550813.5_1_12:100594629-100599999:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8184204101562	2	539.81841	1077.62227	0.41068	0.00022169	-0.06799	-3.6702E-05	0.34269	0.00018499	539.8183048844282	93.43	0.99466	93.517	93.109	94.104	0.086678					240	84	4	0	0	0	0.28128	3	24824	24824;24864;24902		11.64	11.64	1	1899300	+		28562	13799	16529	16530	35169;35170;35171	35169					0.0865609437942112
LYGKVQEL	8	Unmodified	_LYGKVQEL_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.2710266113281	2	475.271293	948.528032	0.42101	0.0002001	-0.12207	-5.8017E-05	0.29894	0.00014208	475.2710989307874	36.998	0.52919	36.998	36.756	37.285	0					46	18	3	0	0	0	0.074763	2	7556	7556;7602		66.457	0	1	609830	+		28563	17091	16530	16531	35172;35173	35172					0.05170955557275647
LYGKVQEL	8	Unmodified	_LYGKVQEL_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.2713317871094	2	475.271293	948.528032	0.35369	0.0001681	-0.039197	-1.8629E-05	0.31449	0.00014947	475.2711257556982	36.843	0.61948	36.93	36.656	37.275	0.08741					53	22	3	0	0	0	0.024395	2	7509	7509;7557		96.111	0	1	663590	+		28564	17091	16530	16531	35174;35175	35174					0.05170955557275647
LYGKVQEL	8	Unmodified	_LYGKVQEL_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.27130126953125	2	475.271293	948.528032	0.56204	0.00026712	-0.2156	-0.00010247	0.34643	0.00016465	475.27102700095435	36.869	0.58834	36.962	36.687	37.275	0.093018					48	21	3	0	0	0	0.10249	2	7517	7517;7567		60.074	0	1	771330	+		28565	17091	16530	16531	35176;35177	35176					0.05170955557275647
LYGKVQEL	8	Unmodified	_LYGKVQEL_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	475.271293	948.528032	0.42101	0.0002001	-0.12207	-5.8017E-05	0.29894	0.00014208	475.2710989307874	36.998	0.52919	36.998	36.756	37.285	0	0.034646	-1.2293E-06	NaN	96.111	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	609830	+		28566	17091	16530	16531							0.05170955557275647
LYGKVQEL	8	Unmodified	_LYGKVQEL_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	475.271293	948.528032	0.35369	0.0001681	-0.039197	-1.8629E-05	0.31449	0.00014947	475.2711257556982	36.843	0.61948	36.93	36.656	37.275	0.08741	-0.033169	7.7545E-05	NaN	96.111	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	663590	+		28567	17091	16530	16531							0.05170955557275647
LYGKVQEL	8	Unmodified	_LYGKVQEL_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	475.271293	948.528032	0.56204	0.00026712	-0.2156	-0.00010247	0.34643	0.00016465	475.27102700095435	36.869	0.58834	36.962	36.687	37.275	0.093018	-0.001477	-9.0137E-05	NaN	96.111	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	771330	+		28568	17091	16530	16531							0.05170955557275647
LYGKVQELN	9	Unmodified	_LYGKVQELN_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3118896484375	2	532.292756	1062.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.368	1	66.355	65.855	66.855	-0.013588								0	0	0	0.15265	1	16597	16597		34.102	3.4659	1		+		28569	17091	16531	16532	35178	35178					0.04217725614716983
LYGLALRFF	9	Unmodified	_LYGLALRFF_					0	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.318603515625	2	550.318577	1098.6226	0.50673	0.00027886	-1.283	-0.00070609	-0.77632	-0.00042722	550.3177392878896	29.974	1.064	29.986	29.302	30.366	0.012264					72	36	3	0	0	0	0.32733	1	5399	5399		4.756	0	1	216070			28570	7323	16532	16533	35179	35179					0.07723514099257045
LYGLLIESR	9	Unmodified	_LYGLLIESR_					0	0	0			REV__ENST00000483458.1_1_9:131831674-131832729:+|nuORF	REV__ENST00000483458.1_1_9:131831674-131832729:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.309326171875	2	532.310949	1062.60735	0.69534	0.00037014	-1.519	-0.00080858	-0.82367	-0.00043845	532.8109311675807	66.15	1.2255	66.15	65.768	66.994	0					96	43	3	0	0	0	0.18158	2	16456	16456;16526		26.341	5.8877	1	1876400	+		28571	16422	16533	16534	35180;35181	35180					0.0785460251142922
LYGLLKSH	8	Unmodified	_LYGLLKSH_					0	0	0			REV__ENSG00000175220|ENST00000311956|ARHGAP1	REV__ENSG00000175220|ENST00000311956|ARHGAP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.76068115234375	2	465.774003	929.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.995	1	65.981	65.481	66.481	-0.013588								0	0	0	0.35779	1	16482	16482		11.114	0	1		+		28572	17880	16534	16535	35182	35182					0.06586679139763874
LYGNIIDNL	9	Unmodified	_LYGNIIDNL_					0	0	0		nc|ENSG00000101365|O43837-3|IDH3B;ENST00000492240.5_1_20:2640597-2640995:-|nuORF;nc|ENSG00000101365|O43837-2|IDH3B;ENSG00000101365|ENST00000380843|IDH3B	nc|ENSG00000101365|O43837-3|IDH3B	nc|ENSG00000101365|O43837-3|IDH3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7799072265625	2	517.779482	1033.54441	0.23441	0.00012137	0.34892	0.00018066	0.58333	0.00030204	517.7796508964993	74.001	0.59681	74.001	73.689	74.286	0					32	19	3	0	0	0	0.0024096	1	18921	18921		106.94	46.866	1	718700			28573	12622	16535	16536	35183	35183					0.028980367233543802
LYGNIIDNL	9	Unmodified	_LYGNIIDNL_					0	0	0		nc|ENSG00000101365|O43837-3|IDH3B;ENST00000492240.5_1_20:2640597-2640995:-|nuORF;nc|ENSG00000101365|O43837-2|IDH3B;ENSG00000101365|ENST00000380843|IDH3B	nc|ENSG00000101365|O43837-3|IDH3B	nc|ENSG00000101365|O43837-3|IDH3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7798461914062	2	517.779482	1033.54441	0.22605	0.00011704	0.263	0.00013618	0.48905	0.00025322	517.7796642796649	73.944	0.60364	73.996	73.692	74.296	0.052361					39	20	3	0	0	0	0.0024096	1	18919	18919		106.94	45.583	1	796620			28574	12622	16535	16536	35184	35184					0.028980367233543802
LYGNIIDNL	9	Unmodified	_LYGNIIDNL_					0	0	0		nc|ENSG00000101365|O43837-3|IDH3B;ENST00000492240.5_1_20:2640597-2640995:-|nuORF;nc|ENSG00000101365|O43837-2|IDH3B;ENSG00000101365|ENST00000380843|IDH3B	nc|ENSG00000101365|O43837-3|IDH3B	nc|ENSG00000101365|O43837-3|IDH3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.317138671875	2	517.779482	1033.54441	0.23181	0.00012003	0.11674	6.0443E-05	0.34854	0.00018047	517.7795267614846	74.002	0.55446	73.971	73.716	74.271	-0.030655					45	19	3	0	0	0	0.0051609	1	18948	18948		92.653	23.548	1	850460			28575	12622	16535	16536	35185	35185					0.028980367233543802
LYGPSFFLLS	10	Unmodified	_LYGPSFFLLS_					0	0	0			REV__ENST00000578795.1_1_17:28576037-28576226:-|nuORF	REV__ENST00000578795.1_1_17:28576037-28576226:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2714233398438	2	572.307875	1142.6012	0.78085	0.00044689	-1.7664	-0.0010109	-0.98556	-0.00056404	572.3068841156596	78.031	0.72108	78	77.759	78.48	-0.030434					42	26	2	0	0	0	0.29519	1	20120	20120		21.747	2.4897	1	149660	+		28576	22468	16536	16537	35186	35186					0.0356008427991128
LYGPSSVSF	9	Unmodified	_LYGPSSVSF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.73992919921875	2	478.739825	955.465098	0.023197	1.1105E-05	0.25486	0.00012201	0.27805	0.00013312	478.7398741985076	61.638	0.93185	61.638	61.281	62.213	0					98	34	4	0	0	0	0.00014409	3	15153	15106;15153;15202		133.7	44.798	1	1738100			28577	4853	16537	16538	35187;35188;35189	35188					-0.01441610230756396
LYGPSSVSF	9	Unmodified	_LYGPSSVSF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7398681640625	2	478.739825	955.465098	-0.13319	-6.3763E-05	0.40935	0.00019597	0.27616	0.00013221	478.73992655808007	61.555	1.0073	61.652	61.325	62.332	0.096985					102	36	4	0	0	0	5.6754E-05	3	15139	15090;15139;15183		147.83	51.546	1	1769700			28578	4853	16537	16538	35190;35191;35192	35191					-0.01441610230756396
LYGPSSVSF	9	Unmodified	_LYGPSSVSF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7398376464844	2	478.739825	955.465098	-0.064646	-3.0948E-05	0.19194	9.1888E-05	0.12729	6.094E-05	478.7398678461335	61.602	1.0294	61.593	61.297	62.326	-0.008728					102	37	4	0	0	0	0.00010798	3	15164	15110;15164;15216		139.54	61.395	1	1668000			28579	4853	16537	16538	35193;35194;35195	35194					-0.01441610230756396
LYGQPASGRE	10	Unmodified	_LYGQPASGRE_					0	0	0			REV__ENST00000452622.1_1_7:562316-563757:+|nuORF	REV__ENST00000452622.1_1_7:562316-563757:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.3006591796875	2	539.269813	1076.52507	0.55328	0.00029837	2.0011	0.0010791	2.5544	0.0013775	540.2714500661781	44.178	0.76439	44.253	44.094	44.859	0.07505					47	27	3	0	0	0	0.28569	1	9882	9882		26.268	5.3969	1	343620	+		28580	21128	16538	16539	35196	35196					-0.010129195675290248
LYGQTKQTS	9	Unmodified	_LYGQTKQTS_					0	0	0			REV__ENSG00000179058|ENST00000372478|C9orf50	REV__ENSG00000179058|ENST00000372478|C9orf50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2677612304688	2	513.266739	1024.51892	0.27269	0.00013996	1.5651	0.00080333	1.8378	0.0009433	513.2677345495771	68.586	1.1824	68.567	68.172	69.355	-0.019157					71	41	2	0	0	0	0.18803	1	17330	17330		25.399	2.2509	1	949970	+		28581	18059	16539	16540	35197	35197					0.007645622009476938
LYGQTKQTS	9	Unmodified	_LYGQTKQTS_					0	0	0			REV__ENSG00000179058|ENST00000372478|C9orf50	REV__ENSG00000179058|ENST00000372478|C9orf50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7451782226562	2	513.266739	1024.51892	0.27269	0.00013996	1.5651	0.00080333	1.8378	0.0009433	513.2677345495771	68.586	1.1824	68.567	68.172	69.355	-0.019157					71	41	2	0	0	0	0.20167	1	17292	17292		29.082	9.8246	1	949970	+		28582	18059	16539	16540	35198	35198					0.007645622009476938
LYGQVQVF	8	Unmodified	_LYGQVQVF_					0	0	0		ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.2584228515625	2	477.258185	952.501818	0.17773	8.4825E-05	1.1156	0.00053244	1.2933	0.00061726	477.2582949813762	63.151	1.7445	63.151	62.115	63.859	0					99	64	3	0	0	0	0.026049	1	15667	15667		93.883	49.476	1	976920			28583	5568	16540	16541	35199	35199					0.023666863858124998
LYGQVQVF	8	Unmodified	_LYGQVQVF_					0	0	0		ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.25830078125	2	477.258185	952.501818	0.31605	0.00015084	0.88653	0.0004231	1.2026	0.00057394	477.2582105200052	63.021	1.7027	63.117	62.174	63.876	0.095722					104	61	3	0	0	0	0.033363	1	15608	15608		86.121	41.714	1	1021800			28584	5568	16540	16541	35200	35200					0.023666863858124998
LYGRCAAQFLT	11	Unmodified	_LYGRCAAQFLT_					0	0	0			REV__nc|ENSG00000196535|Q92614-3|MYO18A	REV__nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.2742919921875	2	621.818615	1241.62268	0.14672	9.1234E-05	-3.1867	-0.0019816	-3.04	-0.0018903	621.8158148537	62.896	0.54654	62.992	62.764	63.311	0.095722					40	19	3	0	0	0	0.26879	1	15559	15559		34.932	5.0915	1	449770	+		28585	18659	16541	16542	35201	35201					0.011531460369496926
LYGRDCDLGTF	11	Unmodified	_LYGRDCDLGTF_					0	0	0		ENST00000337714.7_1_17:55198527-55198593:+|nuORF	ENST00000337714.7_1_17:55198527-55198593:+|nuORF	ENST00000337714.7_1_17:55198527-55198593:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.2908935546875	2	630.289888	1258.56522	0.37324	0.00023525	0.25734	0.0001622	0.63058	0.00039745	630.2900164106045	74.242	0.44414	74.212	74	74.444	-0.030663					34	15	3	0	0	0	0.38187	1	19027	19027		13.615	1.3742	1	1031900			28586	9495	16542	16543	35202	35202					-0.05371740959276394
LYGRHFNYL	9	Unmodified	_LYGRHFNYL_					0	0	0		ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B;nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B	ENST00000562717.1_1_16:50188117-50258568:+|nuORF	ENST00000562717.1_1_16:50188117-50258568:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.807373046875	2	591.806365	1181.59818	0.40021	0.00023685	0.25259	0.00014948	0.6528	0.00038633	591.8064194507958	43.199	0.8391	43.199	42.954	43.793	0					53	30	3	0	0	0	0.017391	1	9448	9448		68.081	32.037	1	742580			28587	2993	16543	16544	35203	35203					0.014642539457554449
LYGRHFNYL	9	Unmodified	_LYGRHFNYL_					0	0	0		ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B;nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B	ENST00000562717.1_1_16:50188117-50258568:+|nuORF	ENST00000562717.1_1_16:50188117-50258568:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8063354492188	2	591.806365	1181.59818	0.29903	0.00017697	0.071678	4.2419E-05	0.37071	0.00021939	591.8063522943637	42.733	0.76383	42.818	42.591	43.355	0.085197					53	27	3	0	0	0	0.0083926	1	9323	9323		81.89	47.788	1	1079700			28588	2993	16543	16544	35204	35204					0.014642539457554449
LYGRHFNYL	9	Unmodified	_LYGRHFNYL_					0	0	0		ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B;nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B	ENST00000562717.1_1_16:50188117-50258568:+|nuORF	ENST00000562717.1_1_16:50188117-50258568:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.8067626953125	2	591.806365	1181.59818	0.19976	0.00011822	-0.066682	-3.9463E-05	0.13308	7.8758E-05	591.8064007867914	42.677	0.80645	42.768	42.527	43.334	0.091362					60	29	3	0	0	0	0.0028127	2	9302	9302;9350		103.75	59.341	1	895270			28589	2993	16543	16544	35205;35206	35205					0.014642539457554449
LYGRNFNYL	9	Unmodified	_LYGRNFNYL_					0	0	0		ENST00000514697.1_1_5:6746314-6755055:+|nuORF;nc|ENSG00000112941|Q5XG87-2|TENT4A;ENSG00000112941|ENST00000230859|TENT4A	ENST00000514697.1_1_5:6746314-6755055:+|nuORF	ENST00000514697.1_1_5:6746314-6755055:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.2840576171875	2	580.298373	1158.58219	0.34935	0.00020273	-0.67239	-0.00039019	-0.32304	-0.00018746	580.2979223197409	52.989	0.57232	52.989	52.686	53.259	0					36	20	2	0	0	0	0.079752	1	12439	12439		41.84	5.7954	1	551690			28590	2466	16544	16545	35207	35207					0.009245477088597909
LYGRNFNYL	9	Unmodified	_LYGRNFNYL_					0	0	0		ENST00000514697.1_1_5:6746314-6755055:+|nuORF;nc|ENSG00000112941|Q5XG87-2|TENT4A;ENSG00000112941|ENST00000230859|TENT4A	ENST00000514697.1_1_5:6746314-6755055:+|nuORF	ENST00000514697.1_1_5:6746314-6755055:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2982788085938	2	580.298373	1158.58219	0.36003	0.00020892	-0.5445	-0.00031597	-0.18447	-0.00010705	580.2980576186683	53.215	0.56178	53.206	52.92	53.482	-0.0096092					35	20	2	0	0	0	0.013258	2	12558	12504;12558		74.423	30.016	1	681160			28591	2466	16544	16545	35208;35209	35209					0.009245477088597909
LYGRYDFYF	9	Unmodified	_LYGRYDFYF_					0	0	0			REV__ENST00000338244.5_1_20:4833170-4833257:-|nuORF	REV__ENST00000338244.5_1_20:4833170-4833257:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.893798828125	2	622.292756	1242.57096	0.061652	3.8365E-05	0.14144	8.8016E-05	0.20309	0.00012638	622.2928608551415	72.793	0.95348	72.847	72.601	73.555	0.053841					51	34	2	0	0	0	0.24848	1	18555	18555		13.906	1.3745	1	215860	+		28592	20091	16545	16546	35210	35210					-0.04062274385319142
LYGRYDFYF	9	Unmodified	_LYGRYDFYF_					0	0	0			REV__ENST00000338244.5_1_20:4833170-4833257:-|nuORF	REV__ENST00000338244.5_1_20:4833170-4833257:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.893798828125	2	622.292756	1242.57096	0.33373	0.00020767	0.36067	0.00022444	0.6944	0.00043212	622.2928445299792	72.931	0.71526	72.902	72.684	73.399	-0.029305					42	25	2	0	0	0	0.24848	1	18586	18586		13.906	3.0821	1	305960	+		28593	20091	16545	16546	35211	35211					-0.04062274385319142
LYGSRGNYEF	10	Unmodified	_LYGSRGNYEF_					0	0	0			REV__nc|ENSG00000149782|Q01970-2|PLCB3	REV__nc|ENSG00000149782|Q01970-2|PLCB3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.2969970703125	2	603.28292	1204.55129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.951	1	54.935	54.435	55.435	-0.015923								0	0	0	0.2002	1	13080	13080		39.95	7.6442	1		+		28594	16483	16546	16547	35212	35212					-0.042806503960719056
LYGYSASGYFL	11	Unmodified	_LYGYSASGYFL_					0	0	0			REV__ENSG00000168158|ENST00000304936|OR2C1	REV__ENSG00000168158|ENST00000304936|OR2C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.2743530273438	2	620.797872	1239.58119	0.28423	0.00017645	-0.75008	-0.00046565	-0.46585	-0.0002892	620.7977696514433	63.06	0.48397	63.06	62.881	63.364	0					41	17	3	0	0	0	0.23599	1	15613	15613		41.84	7.7372	1	765430	+		28595	17445	16547	16548	35213	35213					-0.029017114507041697
LYGYSASGYFL	11	Unmodified	_LYGYSASGYFL_					0	0	0			REV__ENSG00000168158|ENST00000304936|OR2C1	REV__ENSG00000168158|ENST00000304936|OR2C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.2742309570312	2	620.797872	1239.58119	0.18806	0.00011675	-1.0127	-0.00062868	-0.82465	-0.00051194	620.7976986134195	63.094	0.72613	63.086	62.778	63.504	-0.0085564					49	26	3	0	0	0	0.20276	1	15597	15597		49.933	7.8384	1	796680	+		28596	17445	16547	16548	35214	35214					-0.029017114507041697
LYHELYMGA	9	Unmodified	_LYHELYMGA_					0	0	0			REV__ENST00000493267.1_1_12:6765863-6772267:-|nuORF	REV__ENST00000493267.1_1_12:6765863-6772267:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7607421875	2	548.760235	1095.50592	0.60369	0.00033128	0.90624	0.00049731	1.5099	0.00082859	548.7605960483204	44.538	0.88976	44.538	44.206	45.095	0					61	32	4	0	0	0	0.27532	1	9853	9853		12.532	0	1	1565200	+		28597	14729	16548	16549	35215	35215					-0.038015921827991406
LYHGIMMESF	10	Unmodified	_LYHGIMMESF_					0	0	0		ENSG00000187815|ENST00000372706|ZFP69	ENSG00000187815|ENST00000372706|ZFP69	ENSG00000187815|ENST00000372706|ZFP69	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.73583984375	2	614.280477	1226.5464	0.49196	0.0003022	-2.5335	-0.0015563	-2.0415	-0.0012541	614.2796132330296	54.334	0.43806	54.334	54.188	54.626	0					18	15	2	0	0	0	0.27772	1	12939	12939		26.884	0	1	153370			28598	7712	16549	16550	35216	35216					-0.057809938546824924
LYHGIMMESF	10	Unmodified	_LYHGIMMESF_					0	0	0		ENSG00000187815|ENST00000372706|ZFP69	ENSG00000187815|ENST00000372706|ZFP69	ENSG00000187815|ENST00000372706|ZFP69	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	614.280477	1226.5464	0.42674	0.00026214	-5.2667	-0.0032352	-4.84	-0.0029731	614.2782830925437	54.231	0.50065	54.294	54.01	54.511	0.063202	-0.019806	-0.0019767	NaN	26.884	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215170			28599	7712	16549	16550							-0.057809938546824924
LYHGVVMGMF	10	Unmodified	_LYHGVVMGMF_					0	0	0		ENST00000459797.1_1_1:47148918-47150223:-|nuORF	ENST00000459797.1_1_1:47148918-47150223:-|nuORF	ENST00000459797.1_1_1:47148918-47150223:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.369140625	2	577.28028	1152.54601	0.21361	0.00012331	0.65707	0.00037931	0.87068	0.00050263	577.280777609187	70.006	0.53487	70.006	69.815	70.35	0					48	19	3	0	0	0	0.31395	1	17696	17696		7.9102	0	1	327750			28600	10715	16550	16551	35217	35217					-0.024163687838608894
LYHGYIYTY	9	Unmodified	_LYHGYIYTY_					0	0	0		nc|ENSG00000183918|O60880-2|SH2D1A;nc|ENSG00000183918|O60880-4|SH2D1A;ENSG00000183918|ENST00000371139|SH2D1A	nc|ENSG00000183918|O60880-2|SH2D1A	nc|ENSG00000183918|O60880-2|SH2D1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.7674560546875	2	596.787307	1191.56006	0.61572	0.00036745	0.088821	5.3007E-05	0.70454	0.00042046	596.7872315471401	51.317	0.3684	51.317	51.139	51.508	0					19	13	2	0	0	0	0.06608	1	12004	12004		46.921	14.615	1	258600			28601	7419	16551	16552	35218	35218					-0.028056767595671772
LYHGYIYTY	9	Unmodified	_LYHGYIYTY_					0	0	0		nc|ENSG00000183918|O60880-2|SH2D1A;nc|ENSG00000183918|O60880-4|SH2D1A;ENSG00000183918|ENST00000371139|SH2D1A	nc|ENSG00000183918|O60880-2|SH2D1A	nc|ENSG00000183918|O60880-2|SH2D1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.7673950195312	2	596.787307	1191.56006	0.51514	0.00030743	-0.83147	-0.00049621	-0.31633	-0.00018878	596.7870176345855	51.315	0.28286	51.362	51.221	51.504	0.046574					19	10	2	0	0	0	0.10075	1	12001	12001		38.151	2.0242	1	301770			28602	7419	16551	16552	35219	35219					-0.028056767595671772
LYHGYIYTY	9	Unmodified	_LYHGYIYTY_					0	0	0		nc|ENSG00000183918|O60880-2|SH2D1A;nc|ENSG00000183918|O60880-4|SH2D1A;ENSG00000183918|ENST00000371139|SH2D1A	nc|ENSG00000183918|O60880-2|SH2D1A	nc|ENSG00000183918|O60880-2|SH2D1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	596.787307	1191.56006	0.45952	0.00027423	-0.84317	-0.00050319	-0.38365	-0.00022896	596.7866391681029	51.505	0.34019	51.515	51.272	51.612	0.0095634	0.11688	-0.00045254	NaN	46.921	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267010			28603	7419	16551	16552							-0.028056767595671772
LYHINRLRK	9	Unmodified	_LYHINRLRK_					0	0	0			REV__nc|ENSG00000064763|Q96K12-2|FAR2	REV__nc|ENSG00000064763|Q96K12-2|FAR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.246826171875	3	404.915646	1211.72511	-0.1474	-5.9684E-05	-3.1507	-0.0012758	-3.2981	-0.0013354	404.9155179217999	16.905	2.0566	16.905	16.242	18.299	0					252	71	5	0	0	0	0.28225	1	1554	1554		11.495	1.9507	1	1214500	+		28604	13649	16552	16553	35220	35220					0.12771599890743346
LYHINRLRK	9	Unmodified	_LYHINRLRK_					0	0	0			REV__nc|ENSG00000064763|Q96K12-2|FAR2	REV__nc|ENSG00000064763|Q96K12-2|FAR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.53643798828125	3	404.915646	1211.72511	-0.21999	-8.9078E-05	-1.5224	-0.00061643	-1.7423	-0.0007055	404.91511292092923	42.032	0.20895	42.032	41.932	42.141	0					10	6	2	0	0	0	0.25949	1	9137	9137		2.4985	0	1	313430	+		28605	13649	16552	16553	35221	35221					0.12771599890743346
LYHINRLRK	9	Unmodified	_LYHINRLRK_					0	0	0			REV__nc|ENSG00000064763|Q96K12-2|FAR2	REV__nc|ENSG00000064763|Q96K12-2|FAR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2468566894531	3	404.915646	1211.72511	-0.062959	-2.5493E-05	-3.2336	-0.0013094	-3.2966	-0.0013348	404.91564620819906	16.984	2.2186	16.924	16.237	18.456	-0.060429					254	78	4	0	0	0	0.2869	1	1424	1424		10.8	2.644	1	1262300	+		28606	13649	16552	16553	35222	35222					0.12771599890743346
LYHLGEIEF	9	Unmodified	_LYHLGEIEF_					0	0	0			REV__ENSG00000205858|ENST00000401542|LRRC72	REV__ENSG00000205858|ENST00000401542|LRRC72	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3317260742188	2	560.787307	1119.56006	0.87028	0.00048804	-1.023	-0.00057368	-0.15271	-8.5637E-05	560.7866817630663	56.044	0.67764	56.115	55.828	56.506	0.070889					57	24	3	0	0	0	0.23147	1	13418	13418		19.439	8.6151	1	2317500	+		28607	19006	16553	16554	35223	35223					0.005063232404381779
LYHLTGAII	9	Unmodified	_LYHLTGAII_					0	0	0			REV__ENST00000360222.8_1_19:14854584-14867061:-|nuORF	REV__ENST00000360222.8_1_19:14854584-14867061:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7953186035156	2	500.794935	999.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.713	1	58.804	58.304	59.304	0.091301								0	0	0	0.074381	1	14247	14247		53.576	0	1		+		28608	15343	16554	16555	35224	35224					0.07551234828292763
LYHLTGAII	9	Unmodified	_LYHLTGAII_					0	0	0			REV__ENST00000360222.8_1_19:14854584-14867061:-|nuORF	REV__ENST00000360222.8_1_19:14854584-14867061:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7950134277344	2	500.794935	999.575317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.77	1	58.756	58.256	59.256	-0.014267								0	0	0	0.051692	1	14264	14264		60.39	0	1		+		28609	15343	16554	16555	35225	35225					0.07551234828292763
LYHMVFEL	8	Unmodified	_LYHMVFEL_					0	0	0		ENSG00000152256|ENST00000282077|PDK1;nc|ENSG00000152256|Q15118-2|PDK1	ENSG00000152256|ENST00000282077|PDK1	ENSG00000152256|ENST00000282077|PDK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8324584960938	2	526.267696	1050.52084	0.26048	0.00013708	-4.3276	-0.0022775	-4.0671	-0.0021404	526.2653208662755	42.835	0.29736	42.926	42.717	43.015	0.091362					13	10	2	0	0	0	0.31375	1	9290	9290		26.341	19.052	1	142320			28610	5011	16555	16556	35226	35226					-0.002401003147724623
LYHQLLSL	8	Unmodified	_LYHQLLSL_					0	0	0		ENST00000447061.2_1_2:38512560-38513046:+|nuORF	ENST00000447061.2_1_2:38512560-38513046:+|nuORF	ENST00000447061.2_1_2:38512560-38513046:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.78729248046875	2	493.78711	985.559667	0.74698	0.00036885	-0.27565	-0.00013611	0.47133	0.00023274	493.7869665881724	50.991	1.6101	51.001	50.002	51.612	0.0095634					143	60	3	0	0	0	0.30517	1	11797	11797		30.225	0	1	1443300			28611	10602	16556	16557	35227	35227					0.06630948311249085
LYHQVAIQF	9	Unmodified	_LYHQVAIQF_					0	0	0			REV__ENSG00000141452|ENST00000269221|RMC1	REV__ENSG00000141452|ENST00000269221|RMC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.95703125	2	559.803291	1117.59203	0.42053	0.00023541	0.55189	0.00030895	0.97242	0.00054436	559.8035842215334	45.572	0.92551	45.637	45.248	46.174	0.065048					79	33	3	0	0	0	0.24311	1	10096	10096		16.942	5.302	1	1788600	+		28612	16076	16557	16558	35228	35228					0.03793735714225477
LYHQYIPTF	9	Unmodified	_LYHQYIPTF_					0	0	0		nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8314208984375	2	591.303124	1180.5917	-0.052278	-3.0912E-05	0.34642	0.00020484	0.29414	0.00017393	591.303368146722	59.749	0.35794	59.844	59.661	60.019	0.095093					14	12	2	0	0	0	0.1939	1	14603	14603		30.637	5.9627	1	247130			28613	4100	16558	16559	35229	35229					0.008623159943454084
LYHQYIPTF	9	Unmodified	_LYHQYIPTF_					0	0	0		nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.8307495117188	2	591.303124	1180.5917	0.28736	0.00016991	-0.58027	-0.00034312	-0.29292	-0.0001732	591.3026091356487	59.971	0.23883	59.96	59.787	60.026	-0.011486					10	7	2	0	0	0	0.1939	1	14643	14643		30.637	0	1	263500			28614	4100	16558	16559	35230	35230					0.008623159943454084
LYHSQFTYF	9	Unmodified	_LYHSQFTYF_					0	0	0		nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000497170.5_1_13:101795259-101997694:-|nuORF;NALCN|p.L629Yfs*16|1|0.27|ENSG00000102452|chr13:101144850-101144850|A/-|frameshift_variant;ENST00000470333.1_1_13:101833448-102051507:-|nuORF;ENSG00000102452|ENST00000251127|NALCN	nc|ENSG00000102452|Q8IZF0-2|NALCN;ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.2848510742188	2	603.284931	1204.55531	0.37932	0.00022884	-0.51775	-0.00031235	-0.13843	-8.3513E-05	603.2847436395297	28.653	0.64637	28.653	28.389	29.035	0					33	22	3	0	0	0	0.23007	1	5007	5007		19.257	8.4331	1	211940			28615	12625;1767	16559	16560	35231	35231					-0.03878560902330719
LYHSQFTYF	9	Unmodified	_LYHSQFTYF_					0	0	0		nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000497170.5_1_13:101795259-101997694:-|nuORF;NALCN|p.L629Yfs*16|1|0.27|ENSG00000102452|chr13:101144850-101144850|A/-|frameshift_variant;ENST00000470333.1_1_13:101833448-102051507:-|nuORF;ENSG00000102452|ENST00000251127|NALCN	nc|ENSG00000102452|Q8IZF0-2|NALCN;ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.2855834960938	2	603.284931	1204.55531	0.39858	0.00024046	-0.22483	-0.00013563	0.17375	0.00010482	603.2847724827886	28.64	0.49026	28.636	28.438	28.928	-0.0042572					30	16	3	0	0	0	0.25314	1	5016	5016		15.847	2.8047	1	252610			28616	12625;1767	16559	16560	35232	35232					-0.03878560902330719
LYHSQFTYF	9	Unmodified	_LYHSQFTYF_					0	0	0		nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000497170.5_1_13:101795259-101997694:-|nuORF;NALCN|p.L629Yfs*16|1|0.27|ENSG00000102452|chr13:101144850-101144850|A/-|frameshift_variant;ENST00000470333.1_1_13:101833448-102051507:-|nuORF;ENSG00000102452|ENST00000251127|NALCN	nc|ENSG00000102452|Q8IZF0-2|NALCN;ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.28515625	2	603.284931	1204.55531	0.12803	7.7241E-05	-0.22327	-0.00013469	-0.095232	-5.7452E-05	603.2848564938014	28.598	0.56106	28.599	28.41	28.971	0.0004673					30	19	2	0	0	0	0.26612	1	5010	5010		13.906	3.0821	1	213860			28617	12625;1767	16559	16560	35233	35233					-0.03878560902330719
LYHTEIFDCL	10	Unmodified	_LYHTEIFDCL_					0	0	0			REV__ENST00000394290.3_1_2:27615653-27615842:-|nuORF	REV__ENST00000394290.3_1_2:27615653-27615842:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.5906066894531	3	418.53388	1252.57981	-0.1252	-5.24E-05	0.26905	0.00011261	0.14385	6.0206E-05	418.53393621315774	25.311	0.26497	25.311	25.12	25.384	0					9	8	2	0	0	0	0.32033	1	3981	3981		1.7423	0	1	42935	+		28618	17429	16560	16561	35234	35234					-0.0363766881112042
LYHTGANVESF	11	Unmodified	_LYHTGANVESF_					0	0	0		ENSG00000146166|ENST00000370657|LGSN	ENSG00000146166|ENST00000370657|LGSN	ENSG00000146166|ENST00000370657|LGSN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5872802734375	3	413.199777	1236.5775	0.39003	0.00016116	-0.94713	-0.00039135	-0.55709	-0.00023019	413.19929629116075	36.04	0.59172	36.122	35.739	36.331	0.082355					46	21	3	0	0	0	0.32736	1	7237	7237		6.6235	1.9075	1	416140			28619	4696	16561	16562	35235	35235					-0.03132381224600067
LYHTSGSLLL	10	Unmodified	_LYHTSGSLLL_					0	0	0			REV__ENST00000531713.5_2_11:74811748-74811898:+|nuORF	REV__ENST00000531713.5_2_11:74811748-74811898:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.3264770507812	2	552.308406	1102.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.827	1	68.827	68.327	69.327	0								0	0	0	0.34755	1	17362	17362		15.847	1.0089	1		+		28620	22024	16562	16563	35236	35236					0.055062986488110255
LYHWDLPL	8	Unmodified	_LYHWDLPL_					0	0	0		ENSG00000134962|ENST00000257408|KLB	ENSG00000134962|ENST00000257408|KLB	ENSG00000134962|ENST00000257408|KLB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3002319335938	2	528.779285	1055.54402	0.25899	0.00013695	1.342	0.00070963	1.601	0.00084658	528.7798438026149	76.225	1.1712	76.278	75.837	77.008	0.053413					77	41	3	0	0	0	0.32778	1	19541	19541		20.871	6.2895	1	947390			28621	3833	16563	16564	35237	35237					0.018466617941840013
LYIAHETSI	9	Unmodified	_LYIAHETSI_					0	0	0			REV__ENSG00000151005|ENST00000280605|TKTL2	REV__ENSG00000151005|ENST00000280605|TKTL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.8028564453125	2	523.779482	1045.54441	0.25285	0.00013244	-0.379	-0.00019851	-0.12615	-6.6076E-05	523.7791831585696	59.577	0.46778	59.672	59.464	59.932	0.095093					21	16	2	0	0	0	0.23783	1	14559	14559		18.135	2.2878	1	350120	+		28622	16520	16564	16565	35238	35238					0.023460367233838042
LYIANVAHF	9	Unmodified	_LYIANVAHF_					0	0	0		nc|ENSG00000134955|Q8TED4-3|SLC37A2;ENST00000526405.5_1_11:124933263-124955028:+|nuORF;ENSG00000134955|ENST00000403796|SLC37A2;nc|ENSG00000134955|Q8TED4-2|SLC37A2	nc|ENSG00000134955|Q8TED4-3|SLC37A2	nc|ENSG00000134955|Q8TED4-3|SLC37A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.8028564453125	2	524.284734	1046.55492	-0.035795	-1.8767E-05	0.91857	0.00048159	0.88277	0.00046282	524.2846511173153	59.841	0.33269	59.936	59.714	60.047	0.095093					20	11	2	0	0	0	0.044071	1	14559	14559		60.39	34.048	1	374340			28623	3832	16565	16566	35239	35239					0.03350064168466815
LYIASFVVF	9	Unmodified	_LYIASFVVF_					0	0	0			REV__ENSG00000196098|ENST00000354924|OR5K4	REV__ENSG00000196098|ENST00000354924|OR5K4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7811889648438	2	529.799686	1057.58482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.849	1	91.849	91.349	92.349	0.00046539								0	0	0	0.19325	1	24398	24398		24.674	3.8027	1		+		28624	18616	16566	16567	35240	35240					0.058330031137984406
LYIDFGGKF	9	Unmodified	_LYIDFGGKF_					0	0	0		ENST00000522987.1_1_8:80870573-80942483:-|nuORF;ENSG00000147586|ENST00000276585|MRPS28	ENST00000522987.1_1_8:80870573-80942483:-|nuORF	ENST00000522987.1_1_8:80870573-80942483:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2792358398438	2	530.279118	1058.54368	0.4861	0.00025777	0.0653	3.4627E-05	0.5514	0.0002924	530.2792017398282	67.416	0.77695	67.416	67.165	67.942	0					55	26	3	0	0	0	0.017549	2	16925	16925;16957		67.838	41.497	1	647100			28625	4773	16567	16568	35241;35242	35241					0.01675242074338712
LYIDFGGKF	9	Unmodified	_LYIDFGGKF_					0	0	0		ENST00000522987.1_1_8:80870573-80942483:-|nuORF;ENSG00000147586|ENST00000276585|MRPS28	ENST00000522987.1_1_8:80870573-80942483:-|nuORF	ENST00000522987.1_1_8:80870573-80942483:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2792358398438	2	530.279118	1058.54368	0.38765	0.00020556	0.069793	3.701E-05	0.45744	0.00024257	530.2791507609302	67.267	0.83107	67.345	67.094	67.925	0.078041					57	28	3	0	0	0	0.011693	2	16860	16860;16895		76.825	44.708	1	544580			28626	4773	16567	16568	35243;35244	35243					0.01675242074338712
LYIDFGGKF	9	Unmodified	_LYIDFGGKF_					0	0	0		ENST00000522987.1_1_8:80870573-80942483:-|nuORF;ENSG00000147586|ENST00000276585|MRPS28	ENST00000522987.1_1_8:80870573-80942483:-|nuORF	ENST00000522987.1_1_8:80870573-80942483:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2794189453125	2	530.279118	1058.54368	0.362	0.00019196	0.26068	0.00013823	0.62268	0.00033019	530.2792201847292	67.43	0.65755	67.414	67.181	67.838	-0.016296					50	22	4	0	0	0	0.074552	1	16966	16966		43.772	19.099	1	615210			28627	4773	16567	16568	35245	35245					0.01675242074338712
LYIDFRKD	8	Unmodified	_LYIDFRKD_					0	0	0		ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.2587890625	2	535.287474	1068.5604	0.45883	0.00024561	0.64304	0.00034421	1.1019	0.00058982	535.288009222645	51.546	0.67079	51.556	51.321	51.992	0.0095634					33	24	2	0	0	0	0.34046	1	12138	12138		14.582	1.0738	1	370190			28628	1966	16568	16569	35246	35246					0.028857429603021956
LYIDRPLPYL	10	Unmodified	_LYIDRPLPYL_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.3632202148438	2	631.860806	1261.70706	0.3733	0.00023588	0.17404	0.00010997	0.54734	0.00034584	631.8604498118875	70.324	0.74506	70.324	70.023	70.768	0					48	24	3	0	0	0	0.030754	1	17835	17835		63.227	34.146	1	360680			28629	1481	16569	16570	35247	35247					0.08667420125379977
LYIDRPLPYL	10	Unmodified	_LYIDRPLPYL_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.3630981445312	2	631.860806	1261.70706	0.33611	0.00021238	0.51272	0.00032397	0.84883	0.00053634	632.3629531034845	70.355	0.56282	70.416	70.181	70.744	0.060783					42	19	3	0	0	0	0.067258	1	17818	17818		55.235	32.498	1	393750			28630	1481	16569	16570	35248	35248					0.08667420125379977
LYIDRPLPYL	10	Unmodified	_LYIDRPLPYL_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A;nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.3621826171875	2	631.860806	1261.70706	0.45828	0.00028957	0.18858	0.00011916	0.64686	0.00040873	631.8605253490216	70.413	0.63754	70.388	70.106	70.744	-0.024864					49	22	3	0	0	0	0.084702	2	17830	17830;17840		51.415	33.269	1	365810			28631	1481	16569	16570	35249;35250	35249					0.08667420125379977
LYIEFIFI	8	Unmodified	_LYIEFIFI_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8139038085938	2	529.302062	1056.58957	0.36205	0.00019164	-1.1226	-0.00059422	-0.76059	-0.00040258	529.301579675357	73.02	1.2875	73.074	72.539	73.827	0.053833					89	46	2	0	0	0	0.31375	1	18513	18513		26.341	1.6674	1	602660	+		28632	13542	16570	16571	35251	35251					0.06353887256545931
LYIENQFF	8	Unmodified	_LYIENQFF_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.718017578125	2	537.26875	1072.52295	-1.0577	-0.00056829	-2.7675	-0.0014869	-3.8253	-0.0020552	537.2675993419723	34.831	0.76614	34.906	34.522	35.288	0.075306					46	27	2	0	0	0	0.28969	1	6945	6945		36.044	0	1	253560			28633	3416	16571	16572	35252	35252					-0.010413483053525852
LYIENQFFI	9	Unmodified	_LYIENQFFI_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8292846679688	2	593.810782	1185.60701	0.6841	0.00040623	0.092275	5.4794E-05	0.77638	0.00046102	593.8104993865172	84.754	0.53642	84.835	84.564	85.1	0.080887					29	20	2	0	0	0	0.21447	1	22172	22172		21.537	0	1	141690			28634	3416	16572	16573	35253	35253					0.02163182791559848
LYIERGSSF	9	Unmodified	_LYIERGSSF_					0	0	0			REV__ENSG00000103160|ENST00000219439|HSDL1	REV__ENSG00000103160|ENST00000219439|HSDL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2805786132812	2	536.277106	1070.53966	0.48596	0.00026061	1.7766	0.00095274	2.2625	0.0012133	536.278513275011	75.83	2.2343	75.799	74.726	76.96	-0.031487					260	82	5	0	0	0	0.088391	1	19655	19655		39.957	1.9833	1	48523000	+		28635	14356	16573	16574	35254	35254					0.007211525806042118
LYIEWSLL	8	Unmodified	_LYIEWSLL_					0	0	0			REV__ENSG00000142185|ENST00000397928|TRPM2	REV__ENSG00000142185|ENST00000397928|TRPM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.8056640625	2	518.789318	1035.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.693	1	54.756	54.256	55.256	0.063202								0	0	0	0.34752	1	13007	13007		15.768	1.1865	1		+		28636	16105	16574	16575	35255	35255					0.047724127341325584
LYIFSRIL	8	Unmodified	_LYIFSRIL_					0	0	0		L1MC1_dup2137|chr3:11202598-11203364:-|2.1876770070443263|0.3234029913481031|2.76|542.0|15|2|sense	L1MC1_dup2137|chr3:11202598-11203364:-|2.1876770070443263|0.3234029913481031|2.76|542.0|15|2|sense	L1MC1_dup2137|chr3:11202598-11203364:-|2.1876770070443263|0.3234029913481031|2.76|542.0|15|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.8132934570312	2	512.813128	1023.6117	-0.015762	-8.0831E-06	-0.0043112	-2.2109E-06	-0.020073	-1.0294E-05	512.8132082153813	65.121	3.0892	65.21	64.818	67.907	0.088882					272	111	4	0	0	0	0.12475	1	16178	16178		56.177	0.12873	1	7046400			28637	12454	16575	16576	35256	35256					0.10084111724984268
LYIGLDVRQ	9	Unmodified	_LYIGLDVRQ_					0	0	0			REV__nc|ENSG00000162139|Q9UQ49|NEU3	REV__nc|ENSG00000162139|Q9UQ49|NEU3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2667236328125	2	538.808574	1075.60259	0.50108	0.00026998	0.074765	4.0284E-05	0.57584	0.00031027	538.8086608550199	67.991	0.3821	68.069	67.864	68.246	0.078041					19	13	2	0	0	0	0.25066	1	17129	17129		11.64	0.81637	1	125190	+		28638	16964	16576	16577	35257	35257					0.06781718368665679
LYIGYTMQV	9	Unmodified	_LYIGYTMQV_					0	0	0		ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3	ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENST00000506401.6_1_17:48148218-48152910:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.79248046875	2	544.27826	1086.54197	0.63012	0.00034296	0.38405	0.00020903	1.0142	0.00055199	544.2782679555999	69.258	0.50125	69.324	68.958	69.459	0.066048					30	17	2	0	0	0	0.193	1	17510	17510		24.674	1.5255	1	103090			28639	346	16577	16578	35258	35258					0.002158649940838586
LYIHCYAHFL	10	Unmodified	_LYIHCYAHFL_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.21441650390625	3	427.214593	1278.62195	-0.1447	-6.1818E-05	-0.63575	-0.0002716	-0.78045	-0.00033342	427.214442637201	31.713	0.52927	31.713	31.423	31.953	0					43	18	3	0	0	0	0.3001	1	5942	5942		20.415	3.8487	1	696990			28640	7924	16578	16579	35259	35259					-0.006216486120820264
LYIHCYAHFL	10	Unmodified	_LYIHCYAHFL_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.214111328125	3	427.214593	1278.62195	-0.12427	-5.3092E-05	-0.73645	-0.00031462	-0.86072	-0.00036771	427.2144102742424	31.622	0.51354	31.664	31.427	31.941	0.042366					42	17	3	0	0	0	0.3001	1	5928	5928		20.415	3.8487	1	604210			28641	7924	16578	16579	35260	35260					-0.006216486120820264
LYIHCYAHFL	10	Unmodified	_LYIHCYAHFL_					0	0	0		ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	ENSG00000197056|ENST00000359858|ZMYM1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	427.214593	1278.62195	-0.12427	-5.3092E-05	-0.73645	-0.00031462	-0.86072	-0.00036771	427.2144102742424	31.622	0.51354	31.664	31.427	31.941	0.042366	0.00053884	0.00014248	NaN	20.415	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	604210			28642	7924	16578	16579							-0.006216486120820264
LYIHHDSL	8	Unmodified	_LYIHHDSL_					0	0	0			REV__nc|ENSG00000149925|P04075|ALDOA	REV__nc|ENSG00000149925|P04075|ALDOA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7930603027344	2	499.258717	996.50288	0.58039	0.00028977	-2.5235	-0.0012599	-1.9431	-0.00097011	499.25662980360295	64.001	0.33273	64.001	63.797	64.13	0					15	11	2	0	0	0	0.34046	1	15893	15893		14.582	0	1	89484	+		28643	16486	16579	16580	35261	35261					0.004489007547249457
LYIIQNNSF	9	Unmodified	_LYIIQNNSF_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3050537109375	2	556.292756	1110.57096	0.3225	0.0001794	0.41843	0.00023277	0.74093	0.00041217	556.2930274911847	66.841	0.73925	66.841	66.659	67.398	0					53	25	4	0	0	0	0.10058	1	16743	16743		45.7	45.7	1	943390			28644	1214	16580	16581	35262	35262					0.02009725614720992
LYIIQNNSF	9	Unmodified	_LYIIQNNSF_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3126220703125	2	556.292756	1110.57096	0.30414	0.00016919	-1.3341	-0.00074215	-1.03	-0.00057296	556.7930770004386	67.548	0.14207	67.548	67.45	67.592	0					5	4	2	0	0	0	0.2322	1	16948	16948		20.454	10.27	1	57106			28645	1214	16580	16581	35263	35263					0.02009725614720992
LYIIQNNSF	9	Unmodified	_LYIIQNNSF_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3052978515625	2	556.292756	1110.57096	0.31184	0.00017347	0.26842	0.00014932	0.58025	0.00032279	556.2929809688386	66.74	0.75615	66.824	66.631	67.387	0.083832					64	26	4	0	0	0	0.0075874	1	16693	16693		92.491	56.447	1	1297000			28646	1214	16580	16581	35264	35264					0.02009725614720992
LYIIQNNSF	9	Unmodified	_LYIIQNNSF_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.30517578125	2	556.292756	1110.57096	0.081024	4.5073E-05	-0.13751	-7.6498E-05	-0.056489	-3.1425E-05	556.2930755164391	66.905	1.0821	66.892	66.539	67.621	-0.013596					67	28	3	0	0	0	0.10058	1	16735	16735		38.176	12.776	1	943250			28647	1214	16580	16581	35265	35265					0.02009725614720992
LYILVETGF	9	Unmodified	_LYILVETGF_					0	0	0		ENST00000491406.2_3_1:38407883-38412001:-|nuORF	ENST00000491406.2_3_1:38407883-38412001:-|nuORF	ENST00000491406.2_3_1:38407883-38412001:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.274169921875	2	527.794601	1053.57465	0.5007	0.00026427	-1.6115	-0.00085053	-1.1108	-0.00058626	527.7937076438259	80.597	0.2726	80.571	80.405	80.678	-0.026825					15	9	2	0	0	0	0.23783	1	20966	20966		18.135	1.1927	1	81604			28648	11179	16581	16582	35266	35266					0.05000395388583456
LYIMDLRTE	9	Unmodified	_LYIMDLRTE_					0	0	0		nc|ENSG00000119402|Q9UKT8-2|FBXW2;ENSG00000119402|ENST00000608872|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.2404174804688	2	577.299724	1152.5849	0.24612	0.00014208	0.080189	4.6293E-05	0.32631	0.00018838	577.299497091299	67.83	0.6915	67.83	67.51	68.202	0					34	24	2	0	0	0	0.25323	1	16960	16960		10.074	2.1638	1	228100			28649	2875	16582	16583	35267	35267					0.014706350514870792
LYINSGNIPD	10	Unmodified	_LYINSGNIPD_					0	0	0		ENSG00000091106|ENST00000402280|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8264770507812	2	553.279846	1104.54514	0.60858	0.00033672	-1.3972	-0.00077303	-0.78859	-0.00043631	553.2792165390648	65.752	0.5108	65.841	65.628	66.139	0.088882					30	18	2	0	0	0	0.31267	1	16368	16368		10.074	4.777	1	180220			28650	1395	16583	16584	35268	35268					-0.0029516862757645868
LYIPFLWNLQP	11	Unmodified	_LYIPFLWNLQP_					0	0	0		ENST00000441359.1_2_7:112757550-112758579:-|nuORF	ENST00000441359.1_2_7:112757550-112758579:-|nuORF	ENST00000441359.1_2_7:112757550-112758579:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.23529052734375	3	468.595579	1402.76491	-0.62238	-0.00029164	-1.3507	-0.00063294	-1.9731	-0.00092459	468.59510391704816	34.711	0.33154	34.789	34.644	34.975	0.077377					12	11	2	0	0	0	0.3322	1	6836	6836		4.7159	0.59929	1	69982			28651	10554	16584	16585	35269	35269					0.0796368205080853
LYIPSVDLL	9	Unmodified	_LYIPSVDLL_					0	0	0		nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8028564453125	2	516.802426	1031.5903	0.49239	0.00025447	-1.2306	-0.00063597	-0.7382	-0.0003815	516.8023678436846	88.581	0.61996	88.581	88.302	88.922	0					49	30	2	0	0	0	0.017871	1	23397	23397		67.344	33.241	1	235980			28652	7754	16585	16586	35270	35270					0.07576681905629812
LYIPSVDLL	9	Unmodified	_LYIPSVDLL_					0	0	0		nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.80224609375	2	516.802426	1031.5903	0.35218	0.00018201	-0.94377	-0.00048774	-0.59159	-0.00030574	516.8024642109255	88.511	0.7132	88.6	88.231	88.944	0.089195					49	30	2	0	0	0	0.0061338	1	23365	23365		85.357	45.399	1	326770			28653	7754	16585	16586	35271	35271					0.07576681905629812
LYIPSVDLL	9	Unmodified	_LYIPSVDLL_					0	0	0		nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	nc|ENSG00000188554|Q14596-2|NBR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.8023071289062	2	516.802426	1031.5903	0.32497	0.00016795	-1.4902	-0.00077013	-1.1652	-0.00060218	516.8024081625366	88.587	1.0601	88.584	88.016	89.076	-0.0028381					63	47	2	0	0	0	0.017871	1	23377	23377		67.344	33.241	1	282660			28654	7754	16585	16586	35272	35272					0.07576681905629812
LYIQTDHLF	9	Unmodified	_LYIQTDHLF_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7506103515625	2	575.300581	1148.58661	0.34232	0.00019694	0.31801	0.00018295	0.66033	0.00037989	575.300879313361	63.618	0.41487	63.618	63.474	63.889	0					26	14	2	0	0	0	0.023103	1	15762	15762		81.89	41.933	1	297240			28655	4088	16586	16587	35273	35273					0.018260121317553057
LYIQTDHLF	9	Unmodified	_LYIQTDHLF_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7493286132812	2	575.300581	1148.58661	0.47617	0.00027394	-0.12493	-7.187E-05	0.35125	0.00020207	575.3007915030087	63.569	0.57157	63.665	63.39	63.961	0.095722					25	19	2	0	0	0	0.035405	1	15721	15721		70.332	36.23	1	338740			28656	4088	16586	16587	35274	35274					0.018260121317553057
LYIQTDHLF	9	Unmodified	_LYIQTDHLF_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7494506835938	2	575.300581	1148.58661	0.41702	0.00023991	0.12648	7.2765E-05	0.5435	0.00031268	575.3008786094485	63.674	0.39323	63.666	63.459	63.852	-0.0085526					32	13	3	0	0	0	0.016005	1	15761	15761		85.642	45.684	1	322000			28657	4088	16586	16587	35275	35275					0.018260121317553057
LYIQTDHLFF	10	Unmodified	_LYIQTDHLFF_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.2906494140625	2	648.834788	1295.65502	0.18483	0.00011993	0.24922	0.00016171	0.43406	0.00028163	648.8351778954733	75.772	0.49278	75.772	75.503	75.996	0					44	17	3	0	0	0	0.16942	1	19458	19458		57.722	28.64	1	363260			28658	4088	16587	16588	35276	35276					0.019022567116053324
LYIQTDHLFF	10	Unmodified	_LYIQTDHLFF_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.2904663085938	2	648.834788	1295.65502	0.33252	0.00021575	0.4623	0.00029996	0.79482	0.00051571	648.8351104103963	75.732	0.59203	75.784	75.375	75.967	0.052361					47	21	3	0	0	0	0.14181	1	19466	19466		55.503	26.421	1	396280			28659	4088	16587	16588	35277	35277					0.019022567116053324
LYIQTDHLFF	10	Unmodified	_LYIQTDHLFF_					0	0	0		ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ENSG00000137845|ENST00000260408|ADAM10	ENSG00000137845|ENST00000260408|ADAM10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.2904663085938	2	648.834788	1295.65502	0.33217	0.00021553	0.4942	0.00032065	0.82637	0.00053618	648.8351615718195	75.776	0.65783	75.744	75.391	76.049	-0.031479					47	23	3	0	0	0	0.14181	1	19495	19495		63.961	34.879	1	305490			28660	4088	16587	16588	35278	35278					0.019022567116053324
LYIRGQADVH	10	Unmodified	_LYIRGQADVH_					0	0	0			REV__nc|ENSG00000151116|Q8IX04-5|UEVLD	REV__nc|ENSG00000151116|Q8IX04-5|UEVLD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8131713867188	2	586.314554	1170.61456	-0.064252	-3.7672E-05	0.088247	5.174E-05	0.023995	1.4069E-05	586.3142682371932	99.705	0.2822	99.705	99.524	99.806	0					61	37	2	0	0	0	0.32054	1	26624	26624		3.2813	0.28607	1	124910	+		28661	16526	16588	16589	35279	35279					0.036073351118375285
LYIRGQADVH	10	Unmodified	_LYIRGQADVH_					0	0	0			REV__nc|ENSG00000151116|Q8IX04-5|UEVLD	REV__nc|ENSG00000151116|Q8IX04-5|UEVLD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3151245117188	2	586.314554	1170.61456	0.17582	0.00010309	0.060708	3.5594E-05	0.23653	0.00013868	586.3142931263203	95.033	0.29019	95.115	95.031	95.321	0.082771					47	28	2	0	0	0	0.3641	1	25362	25362		10.074	0.6908	1	151110	+		28662	16526	16588	16589	35280	35280					0.036073351118375285
LYIRGQADVH	10	Unmodified	_LYIRGQADVH_					0	0	0			REV__nc|ENSG00000151116|Q8IX04-5|UEVLD	REV__nc|ENSG00000151116|Q8IX04-5|UEVLD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134155273438	2	586.314554	1170.61456	0.15979	9.3689E-05	-0.01197	-7.0183E-06	0.14782	8.6671E-05	586.3142156703987	95.614	0.32886	95.692	95.535	95.863	0.077415					36	25	2	0	0	0	0.31889	1	25564	25564		6.2058	0.47393	1	122180	+		28663	16526	16588	16589	35281	35281					0.036073351118375285
LYITLPLAL	9	Unmodified	_LYITLPLAL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8232421875	2	508.823161	1015.63177	-0.020692	-1.0529E-05	0.36797	0.00018723	0.34728	0.0001767	508.8233528491572	97.967	0.53127	97.967	97.693	98.224	0					157	57	4	0	0	0	0.017871	1	26160	26160		67.344	44.195	1	458280			28664	4514	16589	16590	35282	35282					0.12457862664939512
LYITLPLAL	9	Unmodified	_LYITLPLAL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8233947753906	2	508.823161	1015.63177	0.10038	5.1075E-05	0.23198	0.00011804	0.33235	0.00016911	508.82330984231226	97.888	0.52985	97.95	97.651	98.181	0.061516					182	64	4	0	0	0	0.00207	1	26171	26171		109.63	71.478	1	628610			28665	4514	16589	16590	35283	35283					0.12457862664939512
LYITLPLAL	9	Unmodified	_LYITLPLAL_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8234558105469	2	508.823161	1015.63177	0.25938	0.00013198	0.15916	8.0984E-05	0.41854	0.00021296	508.82321399145326	97.963	0.54018	97.957	97.691	98.232	-0.0068207					161	60	4	0	0	0	0.0036555	2	26227	26227;26296		97.075	58.923	1	703790			28666	4514	16589	16590	35284;35285	35284					0.12457862664939512
LYIVEPLKF	9	Unmodified	_LYIVEPLKF_					0	0	0		ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENSG00000094975|ENST00000263688|SUCO	ENSG00000094975|ENST00000263688|SUCO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.3338012695312	2	561.333893	1120.65323	0.36116	0.00020273	-0.25889	-0.00014532	0.10227	5.7407E-05	561.3336130529466	72.122	0.99989	72.122	71.827	72.827	0					116	36	5	0	0	0	0.0024096	3	18377	18333;18377;18425		106.94	45.583	1	4902100			28667	1443	16590	16591	35286;35287;35288	35287					0.09773247693647136
LYIVEPLKF	9	Unmodified	_LYIVEPLKF_					0	0	0		ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENSG00000094975|ENST00000263688|SUCO	ENSG00000094975|ENST00000263688|SUCO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.333984375	2	561.333893	1120.65323	0.49102	0.00027563	-0.38546	-0.00021637	0.10556	5.9256E-05	561.3335653238555	72.077	0.97489	72.134	71.842	72.816	0.056572					125	35	5	0	0	0	0.0024096	3	18354	18315;18354;18404		106.94	54.672	1	4812200			28668	1443	16590	16591	35289;35290;35291	35290					0.09773247693647136
LYIVEPLKF	9	Unmodified	_LYIVEPLKF_					0	0	0		ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENSG00000094975|ENST00000263688|SUCO	ENSG00000094975|ENST00000263688|SUCO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3338012695312	2	561.333893	1120.65323	0.3527	0.00019798	-0.18858	-0.00010586	0.16412	9.2125E-05	561.3336407833613	72.16	1.0026	72.132	71.845	72.848	-0.027275					121	35	5	0	0	0	0.0037449	3	18385	18339;18385;18436		96.367	48.021	1	4530000			28669	1443	16590	16591	35292;35293;35294	35293					0.09773247693647136
LYIVHPTMF	9	Oxidation (M)	_LYIVHPTM(Oxidation (M))F_		LYIVHPTM(1)F		LYIVHPTM(200)F	0	0	1		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.7943115234375	2	568.794078	1135.5736	0.52039	0.00029599	-0.30031	-0.00017082	0.22007	0.00012518	568.7939600313667	56.479	0.47563	56.479	56.184	56.66	0					70	17	5	0	0	0	1.474E-11	3	13558	13511;13558;13603		198.52	154.11	1	17264000			28670	6848	16591	16592	35295;35296;35297	35296		777			0.011238577480071399
LYIVHPTMF	9	Oxidation (M)	_LYIVHPTM(Oxidation (M))F_		LYIVHPTM(1)F		LYIVHPTM(200)F	0	0	1		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.7945556640625	2	568.794078	1135.5736	0.34611	0.00019687	-0.055149	-3.1369E-05	0.29096	0.0001655	568.7943279173811	56.845	2.4213	56.845	56.633	59.055	0					165	86	5	0	0	0	1.474E-11	6	13652	13652;13704;13752;13802;14022;14076		198.52	154.11	1	21138000			28671	6848	16591	16592	35298;35299;35300;35301;35302;35303	35298		777			0.011238577480071399
LYIVHPTMF	9	Oxidation (M)	_LYIVHPTM(Oxidation (M))F_		LYIVHPTM(1)F		LYIVHPTM(180)F	0	0	1		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.7942504882812	2	568.794078	1135.5736	0.80583	0.00045835	-0.48387	-0.00027522	0.32196	0.00018313	568.7938487733194	56.374	0.48218	56.453	56.146	56.628	0.078671					69	17	5	0	0	0	2.3311E-08	3	13480	13480;13527;13580		179.23	134.82	1	17775000			28672	6848	16591	16592	35304;35305;35306	35304		777			0.011238577480071399
LYIVHPTMF	9	Oxidation (M)	_LYIVHPTM(Oxidation (M))F_		LYIVHPTM(1)F		LYIVHPTM(200)F	0	0	1		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.7946166992188	2	568.794078	1135.5736	0.48279	0.00027461	-0.1905	-0.00010836	0.29229	0.00016625	568.7942549144154	56.73	2.3676	56.809	56.603	58.97	0.078671					204	86	5	0	0	0	1.474E-11	8	13626	13626;13674;13727;13782;13841;13964;14022;14075		198.52	154.11	1	21834000			28673	6848	16591	16592	35307;35308;35309;35310;35311;35312;35313;35314	35307		777			0.011238577480071399
LYIVHPTMF	9	Oxidation (M)	_LYIVHPTM(Oxidation (M))F_		LYIVHPTM(1)F		LYIVHPTM(200)F	0	0	1		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.7947387695312	2	568.794078	1135.5736	0.96166	0.00054699	-0.50796	-0.00028892	0.4537	0.00025806	568.7937726597374	56.574	0.48732	56.555	56.213	56.7	-0.019081					49	17	3	0	0	0	1.474E-11	3	13530	13530;13578;13621		198.52	154.11	1	18640000			28674	6848	16591	16592	35315;35316;35317	35315		777			0.011238577480071399
LYIVHPTMF	9	Oxidation (M)	_LYIVHPTM(Oxidation (M))F_		LYIVHPTM(1)F		LYIVHPTM(200)F	0	0	1		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.7943725585938	2	568.794078	1135.5736	0.49877	0.0002837	-0.078108	-4.4427E-05	0.42066	0.00023927	568.794155863686	56.952	2.2423	56.932	56.7	58.943	-0.019081					139	81	3	0	0	0	1.474E-11	6	13671	13671;13713;13758;13806;13853;14104		198.52	154.11	1	21998000			28675	6848	16591	16592	35318;35319;35320;35321;35322;35323	35318		777			0.011238577480071399
LYIVLFVGF	9	Unmodified	_LYIVLFVGF_					0	0	0			REV__ENSG00000279961|ENST00000623286|OR8U3;REV__ENSG00000181752|ENST00000313447|OR8K5	REV__ENSG00000279961|ENST00000623286|OR8U3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8208618164062	2	535.817879	1069.6212	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.348	1	45.413	44.913	45.913	0.065048								0	0	0	0.22457	1	10118	10118		14.582	0	1		+		28676	19356;18163	16592	16593	35324	35324					0.08917880010517365
LYIVRTILKF	10	Unmodified	_LYIVRTILKF_					0	0	0		ENSG00000179695|ENST00000641202|OR6C2	ENSG00000179695|ENST00000641202|OR6C2	ENSG00000179695|ENST00000641202|OR6C2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.59234619140625	3	422.604186	1264.79073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.453	1	48.453	47.953	48.953	0								0	0	0	0.38023	1	11088	11088		2.086	0.75636	1				28677	7138	16593	16594	35325	35325					0.16892576293071215
LYIYPQSLNF	10	Unmodified	_LYIYPQSLNF_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.E1876Lfs*12|1|0.03|ENSG00000116641|chr1:62476133-62476134|-/GTGCAATTTTGTTTGAGAAAGA|frameshift_variant;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.32958984375	2	629.329339	1256.64412	0.37997	0.00023913	-0.13951	-8.7796E-05	0.24047	0.00015133	629.3291890508119	81.978	0.81392	81.978	81.675	82.489	0					80	30	4	0	0	0	0.00013576	3	21338	21338;21382;21439		132.38	99.594	1	1288700			28678	2734;12665	16594	16595	35326;35327;35328	35326					0.026068543373185094
LYIYPQSLNF	10	Unmodified	_LYIYPQSLNF_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.E1876Lfs*12|1|0.03|ENSG00000116641|chr1:62476133-62476134|-/GTGCAATTTTGTTTGAGAAAGA|frameshift_variant;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.32958984375	2	629.329339	1256.64412	0.0022408	1.4102E-06	0.23406	0.0001473	0.2363	0.00014871	629.3294307692545	81.852	0.99699	81.921	81.65	82.647	0.068985					100	41	5	0	0	0	2.0929E-05	3	21309	21309;21352;21403		143.91	107.78	1	1768500			28679	2734;12665	16594	16595	35329;35330;35331	35329					0.026068543373185094
LYIYPQSLNF	10	Unmodified	_LYIYPQSLNF_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.E1876Lfs*12|1|0.03|ENSG00000116641|chr1:62476133-62476134|-/GTGCAATTTTGTTTGAGAAAGA|frameshift_variant;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.3297119140625	2	629.329339	1256.64412	0.34982	0.00022015	-0.05793	-3.6457E-05	0.29189	0.00018369	629.3292355660894	81.962	1.0334	81.938	81.658	82.691	-0.024048					89	40	4	0	0	0	0.00013576	3	21325	21325;21370;21421		132.38	96.253	1	1894200			28680	2734;12665	16594	16595	35332;35333;35334	35332					0.026068543373185094
LYKDFSHPC	9	Unmodified	_LYKDFSHPC_					0	0	0		ENSG00000119431|ENST00000374180|HDHD3	ENSG00000119431|ENST00000374180|HDHD3	ENSG00000119431|ENST00000374180|HDHD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8134765625	2	555.257859	1108.50117	0.39095	0.00021708	0.89129	0.00049489	1.2822	0.00071197	555.2584086266376	62.606	0.40162	62.606	62.316	62.718	0					20	14	2	0	0	0	0.2451	1	15416	15416		15.847	1.0089	1	80831			28681	2879	16595	16596	35335	35335					-0.04874476325539945
LYKDFSHPC	9	Unmodified	_LYKDFSHPC_					0	0	0		ENSG00000119431|ENST00000374180|HDHD3	ENSG00000119431|ENST00000374180|HDHD3	ENSG00000119431|ENST00000374180|HDHD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8133544921875	2	555.257859	1108.50117	0.38089	0.00021149	0.44673	0.00024805	0.82762	0.00045954	555.2583811654658	62.439	0.4366	62.536	62.228	62.665	0.096985					21	15	2	0	0	0	0.2451	1	15378	15378		15.847	1.0089	1	69536			28682	2879	16595	16596	35336	35336					-0.04874476325539945
LYKDVRDLL	9	Unmodified	_LYKDVRDLL_					0	0	0		ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENST00000465550.5_1_2:220096537-220099084:+|nuORF;ENSG00000163516|ENST00000323348|ANKZF1	ENST00000461731.5_1_2:220094544-220099084:+|nuORF	ENST00000461731.5_1_2:220094544-220099084:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8290405273438	2	567.829506	1133.64446	0.29213	0.00016588	0.18471	0.00010489	0.47684	0.00027077	567.8294707061915	51.611	0.90889	51.611	51.271	52.18	0					61	28	3	0	0	0	0.014058	1	12068	12068		73.196	20.928	1	1190700			28683	5691	16596	16597	35337	35337					0.08298274057187882
LYKDVRDLL	9	Unmodified	_LYKDVRDLL_					0	0	0		ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENST00000465550.5_1_2:220096537-220099084:+|nuORF;ENSG00000163516|ENST00000323348|ANKZF1	ENST00000461731.5_1_2:220094544-220099084:+|nuORF	ENST00000461731.5_1_2:220094544-220099084:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.8297119140625	2	567.829506	1133.64446	0.37754	0.00021438	0.18044	0.00010246	0.55798	0.00031684	567.8294730928977	51.609	0.71407	51.656	51.454	52.168	0.046574					55	25	3	0	0	0	0.0083763	1	12075	12075		81.915	23.236	1	1335800			28684	5691	16596	16597	35338	35338					0.08298274057187882
LYKEGELLLK	10	Unmodified	_LYKEGELLLK_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3609619140625	2	603.360639	1204.70673	0.38411	0.00023176	-0.29735	-0.00017941	0.086761	5.2348E-05	603.3603534677424	73.391	0.54519	73.444	73.118	73.663	0.053833					26	19	2	0	0	0	0.28174	1	18731	18731		22.658	3.0321	1	135100	+		28685	13586	16597	16598	35339	35339					0.11256000405523992
LYKEGELLLK	10	Unmodified	_LYKEGELLLK_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	603.360639	1204.70673	0.37736	0.00022768	-0.26586	-0.00016041	0.1115	6.7276E-05	603.3603909464388	73.354	0.38853	73.354	73.163	73.551	0	-0.045331	1.4668E-05	NaN	22.658	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138000	+		28686	13586	16597	16598							0.11256000405523992
LYKELGEYF	9	Unmodified	_LYKELGEYF_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.2949829101562	2	581.294965	1160.57538	0.40869	0.00023757	1.7111	0.00099463	2.1197	0.0012322	581.2948600237914	60.45	0.75822	60.45	60.15	60.908	0					54	27	3	0	0	0	0.00051734	2	14805	14758;14805		128.93	70.254	1	2367100			28687	3573	16598	16599	35340;35341	35341					0.001511900376272024
LYKELGEYF	9	Unmodified	_LYKELGEYF_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.2951049804688	2	581.294965	1160.57538	0.16065	9.3384E-05	0.20903	0.00012151	0.36968	0.00021489	581.2948226376452	60.37	0.39755	60.466	60.18	60.577	0.095093					40	14	3	0	0	0	0.00019464	2	14766	14719;14766		133.05	64.971	1	1826500			28688	3573	16598	16599	35342;35343	35343					0.001511900376272024
LYKELGEYF	9	Unmodified	_LYKELGEYF_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.294921875	2	581.294965	1160.57538	0.56741	0.00032983	1.4271	0.00082958	1.9945	0.0011594	581.2945758646732	60.512	0.69234	60.502	60.225	60.918	-0.0094566					63	25	4	0	0	0	0.0010968	2	14775	14775;14783		121.53	58.961	1	2144500			28689	3573	16598	16599	35344;35345	35344					0.001511900376272024
LYKFMEALF	9	Unmodified	_LYKFMEALF_					0	0	0			REV__ENSG00000116406|ENST00000318130|EDEM3	REV__ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.3063354492188	2	581.304278	1160.594	0.22601	0.00013138	-0.84882	-0.00049342	-0.62281	-0.00036204	581.3035671572068	73.922	0.70634	73.892	73.448	74.154	-0.030655					34	25	2	0	0	0	0.088391	1	18939	18939		39.957	1.8061	1	308960	+		28690	14923	16599	16600	35346	35346					0.020130284078049954
LYKFSADEF	9	Unmodified	_LYKFSADEF_					0	0	0		ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS;ENSG00000176261|ENST00000468695|ZBTB8OS	ENST00000473294.6_1_1:33098913-33099651:-|nuORF	ENST00000473294.6_1_1:33098913-33099651:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3316040039062	2	560.27149	1118.52843	1.0157	0.00056905	-1.075	-0.0006023	-0.059348	-3.3251E-05	560.2705651398604	56.043	0.54975	56.043	55.82	56.37	0					40	19	3	0	0	0	0.0063009	1	13452	13452		89.401	41.055	1	2171700			28691	6915	16600	16601	35347	35347					-0.02609669513526569
LYKFSADEF	9	Unmodified	_LYKFSADEF_					0	0	0		ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS;ENSG00000176261|ENST00000468695|ZBTB8OS	ENST00000473294.6_1_1:33098913-33099651:-|nuORF	ENST00000473294.6_1_1:33098913-33099651:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3317260742188	2	560.27149	1118.52843	0.82483	0.00046213	0.18234	0.00010216	1.0072	0.00056429	560.2716177660235	55.94	1.0348	56.011	55.501	56.536	0.070885					59	37	3	0	0	0	0.026033	1	13418	13418		82.529	34.183	1	2073800			28692	6915	16600	16601	35348	35348					-0.02609669513526569
LYKFSADEF	9	Unmodified	_LYKFSADEF_					0	0	0		ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS;ENSG00000176261|ENST00000468695|ZBTB8OS	ENST00000473294.6_1_1:33098913-33099651:-|nuORF	ENST00000473294.6_1_1:33098913-33099651:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.331787109375	2	560.27149	1118.52843	0.88814	0.0004976	-0.74819	-0.00041919	0.13994	7.8405E-05	560.270780614622	56.303	0.65189	56.283	56.048	56.7	-0.019081					46	23	3	0	0	0	0.051692	1	13502	13502		72.968	33.011	1	2835700			28693	6915	16600	16601	35349	35349					-0.02609669513526569
LYKIGTFKIQI	11	Unmodified	_LYKIGTFKIQI_					0	0	0			REV__ENST00000563827.5_1_16:71901919-71917343:-|nuORF	REV__ENST00000563827.5_1_16:71901919-71917343:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.9399108886719	3	441.939346	1322.79621	0.099137	4.3812E-05	0.58971	0.00026062	0.68885	0.00030443	441.93969129806726	49.453	1.0459	49.498	48.935	49.981	0.044891					115	38	4	0	0	0	0.4745	1	11465	11465		1.4551	0	1	901720	+		28694	22324	16601	16602	35350	35350					0.14772255084903918
LYKIKPRH	8	Unmodified	_LYKIKPRH_					0	0	0		ENSG00000155816|ENST00000319653|FMN2;nc|ENSG00000155816|Q9NZ56-2|FMN2;ENST00000496950.1_1_1:240635406-240637451:+|nuORF	ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7697143554688	2	527.829643	1053.64473	0.8002	0.00042237	-1.17	-0.00061758	-0.36983	-0.00019521	528.329978136102	45.902	0.14355	45.902	45.86	46.003	0					6	4	2	0	0	0	0.34046	1	10304	10304		14.582	4.3983	1	133000			28695	5197	16602	16603	35351	35351					0.12005738567700064
LYKKARYRRWM	11	Unmodified	_LYKKARYRRWM_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3082275390625	3	524.297762	1569.87146	0.48843	0.00025608	0.56004	0.00029363	1.0485	0.00054971	524.2980401014969	56.894	0.63479	56.973	56.652	57.287	0.078674					53	23	3	0	0	0	0.48173	1	13742	13742		0.50596	0	1	561170	+		28696	13679	16603	16604	35352	35352					0.10931534064297921
LYKKDQFF	8	Unmodified	_LYKKDQFF_					0	0	0			REV__ENSG00000206384|ENST00000358511|COL6A6	REV__ENSG00000206384|ENST00000358511|COL6A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.789794921875	2	544.792392	1087.57023	0.53119	0.00028939	-0.24923	-0.00013578	0.28196	0.00015361	544.7919991097646	73.256	1.4921	73.31	72.459	73.951	0.053833					101	53	3	0	0	0	0.41758	1	18867	18867		16.942	2.104	1	293180	+		28697	19018	16604	16605	35353	35353					0.0299493096565584
LYKKDQFF	8	Unmodified	_LYKKDQFF_					0	0	0			REV__ENSG00000206384|ENST00000358511|COL6A6	REV__ENSG00000206384|ENST00000358511|COL6A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7918701171875	2	544.792392	1087.57023	0.69407	0.00037812	-0.064373	-3.507E-05	0.62969	0.00034305	544.792101617097	75.807	2.3996	75.776	74.786	77.186	-0.031479					130	88	2	0	0	0	0.30517	1	19373	19373		30.225	6.2042	1	464200	+		28698	19018	16604	16605	35354	35354					0.0299493096565584
LYKKLFSR	8	Unmodified	_LYKKLFSR_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2;STAG2|p.E750Dfs*31|1|0.27|ENSG00000101972|chrX:124066420-124066430|AAAGCAGCTCT/-|frameshift_variant;STAG2|p.L995*|1|0.54|ENSG00000101972|chrX:124083478-124083478|T/-|frameshift_variant;STAG2|p.D515*|1|0.33|ENSG00000101972|chrX:124061778-124061779|AG/-|frameshift_variant	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.76416015625	2	527.824027	1053.6335	0.52433	0.00027676	-0.18585	-9.8093E-05	0.33849	0.00017866	527.8237657433808	42.353	0.73526	42.444	42.037	42.772	0.091362					39	25	2	0	0	0	0.34046	1	9116	9116		14.582	4.5078	1	255390			28699	1732	16605	16606	35355	35355					0.10882916473565274
LYKKQIRHK	9	Unmodified	_LYKKQIRHK_					0	0	0		ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.37890625	2	607.380032	1212.74551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.887	1	91.888	91.388	92.388	0.00046539								0	0	0	0.26334	1	24410	24410		2.0598	0.57785	1				28700	6487	16606	16607	35356	35356					0.14764770550573303
LYKKTRNL	8	Unmodified	_LYKKTRNL_					0	0	0			REV__ENSG00000163820|ENST00000296137|FYCO1	REV__ENSG00000163820|ENST00000296137|FYCO1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.317138671875	2	518.319109	1034.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.068	1	74.037	73.537	74.537	-0.030655								0	0	0	0.35985	1	18948	18948		10.183	0.80027	1		+		28701	17092	16607	16608	35357	35357					0.10773728468188892
LYKMCRMIL	9	Unmodified	_LYKMCRMIL_					0	0	0			REV__ENSG00000255151|ENST00000527482|GLYATL1B	REV__ENSG00000255151|ENST00000527482|GLYATL1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135986328125	2	585.813433	1169.61231	0.30609	0.00017931	0.1543	9.039E-05	0.46039	0.0002697	585.8132691042832	76.223	8.1529	76.276	76.189	84.342	0.053421					633	327	3	0	0	0	0.14205	2	20160	20160;20209		32.117	1.8922	1	2035100	+		28702	19240	16608	16609	35358;35359	35358					0.03429123786531818
LYKMLSENF	9	Oxidation (M)	_LYKM(Oxidation (M))LSENF_		LYKM(1)LSENF		LYKM(120)LSENF	0	0	1		ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF	ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF	ENSG00000186141|ENST00000334163|POLR3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.786376953125	2	580.78645	1159.55835	0.53663	0.00031167	-0.067112	-3.8978E-05	0.46951	0.00027269	580.7863752167342	45.968	0.68784	45.968	45.558	46.246	0					55	24	3	0	0	0	0.0013864	1	10306	10306		117.84	81.711	1	672050			28703	7594;11150	16609	16610	35360	35360		839			-0.015050538398327262
LYKMLSENF	9	Oxidation (M)	_LYKM(Oxidation (M))LSENF_		LYKM(1)LSENF		LYKM(120)LSENF	0	0	1		ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF	ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF	ENSG00000186141|ENST00000334163|POLR3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.7867431640625	2	580.78645	1159.55835	0.40645	0.00023606	-0.011794	-6.8499E-06	0.39466	0.00022921	580.7865268255069	45.662	0.67897	45.722	45.336	46.015	0.059834					55	23	3	0	0	0	0.0013864	1	10213	10213		117.84	81.711	1	765920			28704	7594;11150	16609	16610	35361	35361		839			-0.015050538398327262
LYKMLSENF	9	Oxidation (M)	_LYKM(Oxidation (M))LSENF_		LYKM(1)LSENF		LYKM(110)LSENF	0	0	1		ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF	ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF	ENSG00000186141|ENST00000334163|POLR3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.786865234375	2	580.78645	1159.55835	0.4646	0.00026983	-0.089723	-5.211E-05	0.37487	0.00021772	580.7864166611365	45.634	0.7122	45.699	45.384	46.096	0.065048					55	25	3	0	0	0	0.0023309	1	10198	10198		107.56	78.482	1	781660			28705	7594;11150	16609	16610	35362	35362		839			-0.015050538398327262
LYKPKQEVKF	10	Unmodified	_LYKPKQEVKF_					0	0	0		nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.2414245605469	3	427.251813	1278.73361	-0.003479	-1.4864E-06	-0.8472	-0.00036197	-0.85068	-0.00036345	427.25142907238563	30.294	0.50629	30.322	30.103	30.61	0.027946					37	17	3	0	0	0	0.34155	1	5521	5521		14.218	5.2419	1	188640			28706	5243	16610	16611	35363	35363					0.10539109016690418
LYKPKQEVKF	10	Unmodified	_LYKPKQEVKF_					0	0	0		nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.2416687011719	3	427.251813	1278.73361	-0.34234	-0.00014627	-0.28422	-0.00012144	-0.62657	-0.0002677	427.2515909309006	30.31	0.42088	30.337	30.134	30.555	0.027157					36	14	4	0	0	0	0.32099	1	5543	5543		17.863	5.6884	1	201900			28707	5243	16610	16611	35364	35364					0.10539109016690418
LYKPKQEVKF	10	Unmodified	_LYKPKQEVKF_					0	0	0		nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	427.251813	1278.73361	0.010405	4.4454E-06	-0.83696	-0.00035759	-0.82655	-0.00035315	427.25142432885775	30.317	0.48934	30.317	30.064	30.553	0	-0.0085832	-0.00019796	NaN	17.863	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261540			28708	5243	16610	16611							0.10539109016690418
LYKQKKNSSI	10	Unmodified	_LYKQKKNSSI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.560791015625	3	403.571434	1207.69247	-0.2967	-0.00011974	-0.089647	-3.6179E-05	-0.38634	-0.00015592	403.57133934146435	23.371	0.33504	23.371	23.145	23.48	0					25	11	3	0	0	0	0.40085	1	3418	3418		3.3196	0.58445	1	84639			28709	837	16611	16612	35365	35365					0.09693347977236044
LYKRKYPI	8	Unmodified	_LYKRKYPI_					0	0	0			REV__nc|ENSG00000054219|O60449-3|LY75	REV__nc|ENSG00000054219|O60449-3|LY75	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8319702148438	2	540.831852	1079.64915	0.54433	0.00029439	-0.45969	-0.00024862	0.084642	4.5777E-05	540.8325368674184	68.612	2.737	68.612	68.226	70.963	0					296	99	6	0	0	0	0.39956	1	17457	17457		19.439	2.4967	1	81383000	+		28710	22885	16612	16613	35366	35366					0.11251202990615639
LYKRKYPI	8	Unmodified	_LYKRKYPI_					0	0	0			REV__nc|ENSG00000054219|O60449-3|LY75	REV__nc|ENSG00000054219|O60449-3|LY75	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.83203125	2	540.831852	1079.64915	0.46712	0.00025263	-0.49331	-0.0002668	-0.026195	-1.4167E-05	540.8325338539388	68.534	2.4612	68.606	68.24	70.701	0.071938					290	88	6	0	0	0	0.39956	1	17435	17435		19.439	0.077054	1	80195000	+		28711	22885	16612	16613	35367	35367					0.11251202990615639
LYKRKYPI	8	Unmodified	_LYKRKYPI_					0	0	0			REV__nc|ENSG00000054219|O60449-3|LY75	REV__nc|ENSG00000054219|O60449-3|LY75	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.83203125	2	540.831852	1079.64915	0.60207	0.00032562	-0.60015	-0.00032458	0.0019264	1.0419E-06	540.8324534392195	68.627	2.7535	68.608	68.223	70.976	-0.01915					310	98	6	0	0	0	0.39956	1	17454	17454		19.439	3.2899	1	81405000	+		28712	22885	16612	16613	35368	35368					0.11251202990615639
LYKRVFPK	8	Unmodified	_LYKRVFPK_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.302978515625	2	525.826569	1049.63859	0.65563	0.00034475	-0.53363	-0.0002806	0.122	6.4153E-05	525.8260609223887	57.045	0.76738	57.026	56.754	57.522	-0.019077					45	27	3	0	0	0	0.34218	1	13854	13854		9.3474	1.4373	1	374890			28713	6206	16613	16614	35369	35369					0.11575220336180791
LYKSAFFYF	9	Unmodified	_LYKSAFFYF_					0	0	0		ENSG00000164975|ENST00000380821|SNAPC3	ENSG00000164975|ENST00000380821|SNAPC3	ENSG00000164975|ENST00000380821|SNAPC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.3043212890625	2	593.302593	1184.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.318	1	73.318	72.818	73.818	0								0	0	0	0.19534	1	18733	18733		24.021	15.865	1				28714	5911	16614	16615	35370	35370					0.005721016254710776
LYKSLNPNL	9	Unmodified	_LYKSLNPNL_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.30322265625	2	531.303124	1060.5917	0.47289	0.00025125	0.14307	7.6011E-05	0.61595	0.00032726	531.3030189086684	43.222	0.62199	43.306	43.088	43.71	0.083996					44	22	3	0	0	0	0.07944	1	9525	9525		41.956	21.502	1	571700			28715	3320	16615	16616	35371	35371					0.06382315994369492
LYKSLNPNL	9	Unmodified	_LYKSLNPNL_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.303124	1060.5917	0.47395	0.00025181	0.48402	0.00025716	0.95798	0.00050898	531.3033236467517	43.529	0.48597	43.529	43.281	43.767	0	0.12956	0.00018606	NaN	41.956	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	556470			28716	3320	16615	16616							0.06382315994369492
LYKSLNPNL	9	Unmodified	_LYKSLNPNL_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	531.303124	1060.5917	0.55822	0.00029658	0.27178	0.0001444	0.83	0.00044098	531.3029991688234	43.285	0.49917	43.362	43.127	43.626	0.077515	-0.036861	-3.9466E-05	NaN	41.956	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	541390			28717	3320	16615	16616							0.06382315994369492
LYKTIFEGF	9	Unmodified	_LYKTIFEGF_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;ENST00000495701.1_1_1:3746348-3747783:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2908325195312	2	559.30005	1116.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.315	1	66.315	65.815	66.815	0								0	0	0	0.00036775	1	16591	16591		107.1	70.973	1				28718	2712	16616	16617	35372	35372					0.031917977628836525
LYKTIFEGF	9	Unmodified	_LYKTIFEGF_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;ENST00000495701.1_1_1:3746348-3747783:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.291015625	2	559.30005	1116.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.164	1	66.248	65.748	66.748	0.083832								0	0	0	2.556E-06	1	16538	16538		117.76	81.634	1				28719	2712	16616	16617	35373	35373					0.031917977628836525
LYKTKLPF	8	Unmodified	_LYKTKLPF_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.77947998046875	2	505.307678	1008.6008	0.34778	0.00017574	0.75235	0.00038017	1.1001	0.0005559	505.3084968115105	70.298	0.93977	70.274	69.727	70.667	-0.02327					60	33	3	0	0	0	0.34147	1	17655	17655		6.3541	0	1	353550			28720	8086	16617	16618	35374	35374					0.09684709350710818
LYKTKLPF	8	Unmodified	_LYKTKLPF_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	505.307678	1008.6008	0.33562	0.00016959	0.6085	0.00030748	0.94412	0.00047707	505.30817056822195	70.236	0.76327	70.236	69.92	70.683	0	-0.037449	-3.5508E-05	NaN	6.3541	52	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366390			28721	8086	16617	16618							0.09684709350710818
LYKTKLPF	8	Unmodified	_LYKTKLPF_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	505.307678	1008.6008	0.30026	0.00015172	0.61234	0.00030942	0.9126	0.00046115	505.30840634611695	70.243	0.80869	70.309	69.826	70.635	0.066048	0.036186	-3.1625E-05	NaN	6.3541	65	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292350			28722	8086	16617	16618							0.09684709350710818
LYKVTGQFP	9	Unmodified	_LYKVTGQFP_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3029174804688	2	526.792392	1051.57023	0.50818	0.0002677	-2.3404	-0.0012329	-1.8323	-0.00096522	527.2917844180025	68.023	0.14069	68.101	68	68.14	0.078041					6	4	2	0	0	0	0.25526	1	17092	17092		7.9102	0	1	61466			28723	1576	16618	16619	35375	35375					0.046509309656585174
LYKWVPTCL	9	Unmodified	_LYKWVPTCL_					0	0	0			REV__ENST00000269349.7_1_17:78109208-78109292:-|nuORF	REV__ENST00000269349.7_1_17:78109208-78109292:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.30322265625	2	561.804445	1121.59434	0.1056	5.9326E-05	-0.41005	-0.00023037	-0.30445	-0.00017104	561.8040682607506	64.965	0.35315	64.954	64.721	65.074	-0.011337					19	12	2	0	0	0	0.17611	1	16186	16186		34.102	9.4286	1	631870	+		28724	19671	16619	16620	35376	35376					0.038404481276756997
LYKYPELLI	9	Unmodified	_LYKYPELLI_					0	0	0			REV__ENSG00000152904|ENST00000282841|GGPS1	REV__ENSG00000152904|ENST00000282841|GGPS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7923583984375	2	576.339175	1150.6638	0.29106	0.00016775	-0.18213	-0.00010497	0.10893	6.2778E-05	576.3392082022959	73.037	0.4136	73.09	72.814	73.227	0.053833					23	14	2	0	0	0	0.22674	1	18645	18645		22.736	6.5872	1	130350	+		28725	16602	16620	16621	35377	35377					0.09449230348081983
LYKYSLLN	8	Unmodified	_LYKYSLLN_					0	0	0			REV__ENSG00000113645|ENST00000265293|WWC1	REV__ENSG00000113645|ENST00000265293|WWC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.8113708496094	2	507.286943	1012.55933	0.37533	0.0001904	-1.5884	-0.00080578	-1.2131	-0.00061538	507.7896044258273	53.333	0.3106	53.324	53.247	53.558	-0.0096054					12	11	2	0	0	0	0.28969	1	12601	12601		36.044	5.4077	1	262390	+		28726	14816	16621	16622	35378	35378					0.05355528591383063
LYLADRLHPE	10	Unmodified	_LYLADRLHPE_					0	0	0			REV__ENSG00000165152|ENST00000374848|PGAP4	REV__ENSG00000165152|ENST00000374848|PGAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5555114746094	3	409.555784	1225.64552	0.15834	6.485E-05	-0.3429	-0.00014044	-0.18456	-7.5588E-05	409.5556330051399	43.524	0.72715	43.601	43.347	44.074	0.077515					48	26	2	0	0	0	0.35267	1	9567	9567		12.175	2.4105	1	766530	+		28727	17210	16622	16623	35379	35379					0.04172488426070231
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7693481445312	2	530.769114	1059.52368	0.75305	0.0003997	-0.31442	-0.00016689	0.43863	0.00023281	530.768991784377	47.631	0.57526	47.631	47.274	47.849	0					49	20	3	0	0	0	4.3382E-05	1	10825	10825		149.99	0	1	1618900			28728	1610	16623	16624	35380	35380					-0.0037055365628475556
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2925415039062	2	530.769114	1059.52368	0.59929	0.00031808	0.20714	0.00010995	0.80643	0.00042803	530.7691176946228	48.846	0.95974	48.846	48.582	49.542	0					88	34	3	0	0	0	0.0057766	1	11182	11182		99.799	0	1	2363600			28729	1610	16623	16624	35381	35381					-0.0037055365628475556
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.769287109375	2	530.769114	1059.52368	0.57841	0.000307	-0.43215	-0.00022937	0.14626	7.7633E-05	530.769008329383	47.596	0.67253	47.644	47.163	47.836	0.047523					68	24	4	0	0	0	4.3382E-05	1	10804	10804		149.99	0	1	1655900			28730	1610	16623	16624	35382	35382					-0.0037055365628475556
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2930297851562	2	530.769114	1059.52368	0.47842	0.00025393	0.10868	5.7685E-05	0.58711	0.00031162	530.7691283768835	48.822	1.221	48.867	48.629	49.85	0.044891					76	44	2	0	0	0	0.0057766	1	11210	11210		99.799	0	1	2546100			28731	1610	16623	16624	35383	35383					-0.0037055365628475556
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7694091796875	2	530.769114	1059.52368	0.84779	0.00044998	-0.30608	-0.00016246	0.54172	0.00028753	530.7688758554575	47.555	0.5511	47.598	47.298	47.85	0.04332					46	20	3	0	0	0	4.3382E-05	2	10786	10786;10837		149.99	0	1	1693600			28732	1610	16623	16624	35384;35385	35384					-0.0037055365628475556
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	530.769114	1059.52368	1.1961	0.00063483	-3.0288	-0.0016076	-1.8327	-0.00097275	531.2692325286783	47.209	0.11588	47.263	47.168	47.284	0.054371	-0.24977	-0.0027786	NaN	149.99	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231090			28733	1610	16623	16624							-0.0037055365628475556
LYLDKATLI	9	Unmodified	_LYLDKATLI_					0	0	0		nc|ENSG00000101888|Q9NPJ8-4|NXT2;ENSG00000101888|ENST00000372106|NXT2;nc|ENSG00000101888|Q9NPJ8-3|NXT2	nc|ENSG00000101888|Q9NPJ8-4|NXT2	nc|ENSG00000101888|Q9NPJ8-4|NXT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7445068359375	2	525.3157	1048.61685	-0.036246	-1.904E-05	-0.6964	-0.00036583	-0.73265	-0.00038487	525.3154162195387	59.888	0.30611	59.983	59.771	60.077	0.095093					15	10	2	0	0	0	0.19208	1	14591	14591		33.445	2.8084	1	243810			28734	1726	16624	16625	35386	35386					0.09448370796940253
LYLDKATLI	9	Unmodified	_LYLDKATLI_					0	0	0		nc|ENSG00000101888|Q9NPJ8-4|NXT2;ENSG00000101888|ENST00000372106|NXT2;nc|ENSG00000101888|Q9NPJ8-3|NXT2	nc|ENSG00000101888|Q9NPJ8-4|NXT2	nc|ENSG00000101888|Q9NPJ8-4|NXT2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	525.3157	1048.61685	0.40558	0.00021306	-1.0498	-0.00055148	-0.64422	-0.00033842	525.3154020909926	59.947	0.23883	59.935	59.787	60.026	-0.011486	-0.023796	-0.00028581	NaN	33.445	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238390			28735	1726	16624	16625							0.09448370796940253
LYLDLLDYL	9	Unmodified	_LYLDLLDYL_					0	0	0		ENST00000609471.1_1_9:139694564-139695182:+|nuORF;nc|ENSG00000213213|Q5T5S1-3|CCDC183;ENST00000415992.5_1_9:139693810-139699267:+|nuORF;nc|ENSG00000213213|Q5T5S1-4|CCDC183;ENST00000430612.5_1_9:139694306-139700853:+|nuORF;ENST00000371682.7_1_9:139690828-139700853:+|nuORF;nc|ENSG00000213213|Q5T5S1-2|CCDC183;ENSG00000213213|ENST00000338005|CCDC183	ENST00000609471.1_1_9:139694564-139695182:+|nuORF	ENST00000609471.1_1_9:139694564-139695182:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3316650390625	2	570.81299	1139.61143	0.24819	0.00014167	-2.5076	-0.0014314	-2.2594	-0.0012897	570.8115685302174	75.225	0.4118	75.225	75.154	75.565	0					18	14	2	0	0	0	0.25066	1	19297	19297		11.64	0	1	64856			28736	8336	16625	16626	35387	35387					0.04720647214503515
LYLDLYNLKL	10	Unmodified	_LYLDLYNLKL_					0	0	0			REV__nc|ENSG00000165568|Q96JD6-5|AKR1E2	REV__nc|ENSG00000165568|Q96JD6-5|AKR1E2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5472412109375	3	423.248068	1266.72238	0.024375	1.0317E-05	-3.2961	-0.0013951	-3.2717	-0.0013848	423.2466325982755	39.397	0.41339	39.496	39.262	39.676	0.099407					21	14	2	0	0	0	0.31746	1	8327	8327		9.544	2.9136	1	139860	+		28737	17246	16626	16627	35388	35388					0.09968286922571679
LYLDLYNLKL	10	Unmodified	_LYLDLYNLKL_					0	0	0			REV__nc|ENSG00000165568|Q96JD6-5|AKR1E2	REV__nc|ENSG00000165568|Q96JD6-5|AKR1E2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	423.248068	1266.72238	-0.38788	-0.00016417	-2.5531	-0.0010806	-2.9409	-0.0012448	423.2471773727103	39.496	0.40172	39.496	39.321	39.723	0	0.0034105	-0.00076374	NaN	6.1918	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83515	+		28738	17246	16626	16627							0.09968286922571679
LYLECEPDPV	10	Unmodified	_LYLECEPDPV_					0	0	0		ENSG00000152292|ENST00000469800|SH2D6	ENSG00000152292|ENST00000469800|SH2D6	ENSG00000152292|ENST00000469800|SH2D6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.7645263671875	2	589.275915	1176.53728	0.66955	0.00039455	-2.9724	-0.0017516	-2.3029	-0.001357	589.273827174829	77.068	0.69434	77.037	76.709	77.404	-0.031334					40	25	2	0	0	0	0.29978	1	19939	19939		20.454	5.6154	1	141110			28739	5014	16627	16628	35389	35389					-0.04393063939369313
LYLENIDEF	9	Unmodified	_LYLENIDEF_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000527458.5_1_11:74303652-74303820:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF	ENSG00000077514|ENST00000263681|POLD3;ENST00000532784.5_1_11:74303703-74306426:+|nuORF	ENSG00000077514|ENST00000263681|POLD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.2816772460938	2	578.282054	1154.54956	0.43403	0.00025099	-0.23494	-0.00013586	0.19908	0.00011513	578.2818632431502	77.135	1.014	77.135	76.782	77.796	0					87	33	5	0	0	0	0.00023138	1	19910	19910		142.08	45.795	1	1738000			28740	1092;11643	16628	16629	35390	35390					-0.02153704204670248
LYLENIDEF	9	Unmodified	_LYLENIDEF_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000527458.5_1_11:74303652-74303820:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF	ENSG00000077514|ENST00000263681|POLD3;ENST00000532784.5_1_11:74303703-74306426:+|nuORF	ENSG00000077514|ENST00000263681|POLD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2818603515625	2	578.282054	1154.54956	0.42991	0.00024861	-0.21306	-0.00012321	0.21686	0.0001254	578.2818627703145	77.069	1.1674	77.125	76.785	77.952	0.05542					95	41	4	0	0	0	0.012082	1	19885	19885		74.929	34.972	1	1434900			28741	1092;11643	16628	16629	35391	35391					-0.02153704204670248
LYLENIDEF	9	Unmodified	_LYLENIDEF_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000527458.5_1_11:74303652-74303820:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF	ENSG00000077514|ENST00000263681|POLD3;ENST00000532784.5_1_11:74303703-74306426:+|nuORF	ENSG00000077514|ENST00000263681|POLD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.2819213867188	2	578.282054	1154.54956	0.59763	0.0003456	-0.44597	-0.00025789	0.15166	8.7705E-05	578.2817315446797	77.17	1.0857	77.139	76.754	77.84	-0.031334					87	37	4	0	0	0	9.2305E-05	1	19863	19863		142.08	45.795	1	1737900			28742	1092;11643	16628	16629	35392	35392					-0.02153704204670248
LYLEPQGTLF	10	Unmodified	_LYLEPQGTLF_					0	0	0		nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.81591796875	2	590.816064	1179.61758	0.40121	0.00023704	-0.47332	-0.00027965	-0.072111	-4.2605E-05	590.8157518890653	79.848	0.88854	79.848	79.524	80.412	0					91	33	4	0	0	0	0.0023511	2	20737	20691;20737		107.1	72.698	1	1038600			28743	809	16629	16630	35393;35394	35394					0.034951654459973724
LYLEPQGTLF	10	Unmodified	_LYLEPQGTLF_					0	0	0		nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.8159790039062	2	590.816064	1179.61758	0.40485	0.00023919	-0.61726	-0.00036469	-0.21241	-0.00012549	590.8156507096655	79.755	0.69526	79.817	79.542	80.237	0.061409					64	25	3	0	0	0	0.0092666	2	20658	20658;20707		83.429	60.692	1	945590			28744	809	16629	16630	35395;35396	35395					0.034951654459973724
LYLEPQGTLF	10	Unmodified	_LYLEPQGTLF_					0	0	0		nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	nc|ENSG00000065243|Q16513-4|PKN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.8160400390625	2	590.816064	1179.61758	0.41464	0.00024497	-0.56432	-0.00033341	-0.14968	-8.8433E-05	590.815692931115	79.896	0.80368	79.867	79.57	80.373	-0.028931					67	28	3	0	0	0	0.0029823	2	20694	20694;20749		103.42	74.338	1	940470			28745	809	16629	16630	35397;35398	35397					0.034951654459973724
LYLERVRL	8	Unmodified	_LYLERVRL_					0	0	0		SAMD3|p.E454V|1|0.2|ENSG00000164483|chr6:130144722-130144722|T/A|missense_variant	SAMD3|p.E454V|1|0.2|ENSG00000164483|chr6:130144722-130144722|T/A|missense_variant	SAMD3|p.E454V|1|0.2|ENSG00000164483|chr6:130144722-130144722|T/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3260498046875	2	531.326934	1060.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.537	1	88.626	88.126	89.126	0.089195								0	0	0	0.37078	1	23384	23384		5.2307	0	1				28746	23373	16630	16631	35399	35399					0.1114201498521652
LYLETRSEF	9	Unmodified	_LYLETRSEF_					0	0	0		ENST00000353107.7_1_8:101162841-101162934:+|nuORF	ENST00000353107.7_1_8:101162841-101162934:+|nuORF	ENST00000353107.7_1_8:101162841-101162934:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3086547851562	2	579.295496	1156.57644	0.4652	0.00026949	-0.37963	-0.00021992	0.085576	4.9574E-05	579.295476973014	50.241	0.84155	50.241	49.976	50.818	0					50	30	3	0	0	0	0.088443	1	11691	11691		39.95	11.463	1	535730			28747	9583	16631	16632	35400	35400					0.004414044065015332
LYLETRSEF	9	Unmodified	_LYLETRSEF_					0	0	0		ENST00000353107.7_1_8:101162841-101162934:+|nuORF	ENST00000353107.7_1_8:101162841-101162934:+|nuORF	ENST00000353107.7_1_8:101162841-101162934:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.2957763671875	2	579.295496	1156.57644	0.83866	0.00048583	-0.56757	-0.00032879	0.27109	0.00015704	579.2953650790528	50.207	0.5161	50.252	50.06	50.576	0.044891					42	18	3	0	0	0	0.058995	2	11665	11665;11681		49.554	18.286	1	541680			28748	9583	16631	16632	35401;35402	35401					0.004414044065015332
LYLETRSEF	9	Unmodified	_LYLETRSEF_					0	0	0		ENST00000353107.7_1_8:101162841-101162934:+|nuORF	ENST00000353107.7_1_8:101162841-101162934:+|nuORF	ENST00000353107.7_1_8:101162841-101162934:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.3088989257812	2	579.295496	1156.57644	0.83742	0.00048511	-0.53921	-0.00031236	0.29821	0.00017275	579.2953875277254	50.257	0.83395	50.277	50.038	50.872	0.020691					41	30	2	0	0	0	0.13748	1	11685	11685		32.786	4.2988	1	480540			28749	9583	16631	16632	35403	35403					0.004414044065015332
LYLEVVPVI	9	Unmodified	_LYLEVVPVI_					0	0	0		ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8206176757812	2	522.820618	1043.62668	0.52957	0.00027687	-0.32337	-0.00016907	0.20619	0.0001078	522.8204646608067	90.156	0.55434	90.156	89.92	90.474	0					108	45	3	0	0	0	0.2451	1	23886	23886		15.847	5.7733	1	190140			28750	7489	16632	16633	35404	35404					0.10661558802325999
LYLEVVPVI	9	Unmodified	_LYLEVVPVI_					0	0	0		ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.821044921875	2	522.820618	1043.62668	0.47834	0.00025009	-0.39144	-0.00020465	0.086902	4.5434E-05	522.8204860034796	89.984	0.51404	90.075	89.885	90.399	0.090668					88	37	3	0	0	0	0.1669	2	23842	23802;23842		28.487	15.955	1	284120			28751	7489	16632	16633	35405;35406	35406					0.10661558802325999
LYLEVVPVI	9	Unmodified	_LYLEVVPVI_					0	0	0		ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	ENSG00000184985|ENST00000507866|SORCS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8207397460938	2	522.820618	1043.62668	0.56298	0.00029434	-0.43918	-0.00022961	0.1238	6.4727E-05	522.8204609022398	90.109	0.52921	90.11	89.907	90.436	0.0003891					88	41	3	0	0	0	0.19839	1	23874	23874		28.487	18.413	1	255730			28752	7489	16632	16633	35407	35407					0.10661558802325999
LYLFCDVFE	9	Carbamidomethyl (C)	_LYLFC(Carbamidomethyl (C))DVFE_	LYLFC(1)DVFE		LYLFC(51)DVFE		0	1	0			REV__ENST00000555826.5_1_14:45369638-45373733:+|nuORF	REV__ENST00000555826.5_1_14:45369638-45373733:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.2950439453125	2	603.281	1204.54745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.665	1	54.665	54.165	55.165	0								0	0	0	0.083439	1	12998	12998		50.855	10.905	1		+		28753	18078	16633	16634	35408	35408	27				-0.04664456214140955
LYLFCDVFE	9	Carbamidomethyl (C)	_LYLFC(Carbamidomethyl (C))DVFE_	LYLFC(1)DVFE		LYLFC(51)DVFE		0	1	0			REV__ENST00000555826.5_1_14:45369638-45373733:+|nuORF	REV__ENST00000555826.5_1_14:45369638-45373733:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.2968139648438	2	603.281	1204.54745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.757	1	54.757	54.257	55.257	0								0	0	0	0.083439	1	13026	13026		50.855	12.24	1		+		28754	18078	16633	16634	35409	35409	27				-0.04664456214140955
LYLFCDVFE	9	Carbamidomethyl (C)	_LYLFC(Carbamidomethyl (C))DVFE_	LYLFC(1)DVFE		LYLFC(42)DVFE		0	1	0			REV__ENST00000555826.5_1_14:45369638-45373733:+|nuORF	REV__ENST00000555826.5_1_14:45369638-45373733:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.2973022460938	2	603.281	1204.54745	0.80162	0.0004836	3.092	0.0018653	3.8936	0.0023489	603.283138363698	54.618	0.21153	54.681	54.566	54.777	0.063202					10	7	2	0	0	0	0.079066	1	13010	13010		42.095	10.057	1	2029100	+		28755	18078	16633	16634	35410	35410	27				-0.04664456214140955
LYLFCDVFE	9	Carbamidomethyl (C)	_LYLFC(Carbamidomethyl (C))DVFE_	LYLFC(1)DVFE		LYLFC(51)DVFE		0	1	0			REV__ENST00000555826.5_1_14:45369638-45373733:+|nuORF	REV__ENST00000555826.5_1_14:45369638-45373733:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.298583984375	2	603.281	1204.54745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.016	1	55	54.5	55.5	-0.015923								0	0	0	0.083439	1	13100	13100		50.855	16.753	1		+		28756	18078	16633	16634	35411	35411	27				-0.04664456214140955
LYLFCDVFE	9	Carbamidomethyl (C)	_LYLFC(Carbamidomethyl (C))DVFE_	LYLFC(1)DVFE		LYLFC(51)DVFE		0	1	0			REV__ENST00000555826.5_1_14:45369638-45373733:+|nuORF	REV__ENST00000555826.5_1_14:45369638-45373733:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.3004760742188	2	603.281	1204.54745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.333	1	55.314	54.814	55.814	-0.019081								0	0	0	0.083439	1	13198	13198		50.855	18.55	1		+		28757	18078	16633	16634	35412	35412	27				-0.04664456214140955
LYLFSLKDFN	10	Unmodified	_LYLFSLKDFN_					0	0	0			REV__COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	REV__COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.7801513671875	2	630.337164	1258.65977	0.4405	0.00027766	-0.33096	-0.00020861	0.10954	6.9047E-05	630.3369949854623	62.438	0.16004	62.438	62.316	62.476	0					8	5	2	0	0	0	0.31039	1	15390	15390		18.146	2.8979	1	71118	+		28758	13282	16634	16635	35413	35413					0.04079140854378238
LYLFSLKDFN	10	Unmodified	_LYLFSLKDFN_					0	0	0			REV__COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	REV__COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.7801513671875	2	630.337164	1258.65977	0.27538	0.00017358	0.215	0.00013552	0.49038	0.00030911	630.337360355688	62.351	0.21386	62.448	62.307	62.521	0.096985					13	7	3	0	0	0	0.31039	1	15368	15368		13.042	0	1	136050	+		28759	13282	16634	16635	35414	35414					0.04079140854378238
LYLFVTSGL	9	Unmodified	_LYLFVTSGL_					0	0	0			REV__ENST00000526600.1_1_11:12965683-12965947:+|nuORF	REV__ENST00000526600.1_1_11:12965683-12965947:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7747497558594	2	506.789318	1011.56408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.422	1	17.422	16.922	17.922	0								0	0	0	0.24522	1	1625	1625		7.9102	4.9149	1		+		28760	21965	16635	16636	35415	35415					0.058764127341419226
LYLFYLYK	8	Unmodified	_LYLFYLYK_					0	0	0			REV__ENST00000583108.5_1_17:65735015-65739972:+|nuORF	REV__ENST00000583108.5_1_17:65735015-65739972:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.8172607421875	2	561.815336	1121.61612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.027	1	19.027	18.527	19.527	0								0	0	0	0.36961	1	2110	2110		5.7604	1.0044	1		+		28761	15489	16636	16637	35416	35416					0.06017576147883119
LYLFYLYK	8	Unmodified	_LYLFYLYK_					0	0	0			REV__ENST00000583108.5_1_17:65735015-65739972:+|nuORF	REV__ENST00000583108.5_1_17:65735015-65739972:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.81689453125	2	561.815336	1121.61612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.109	1	19.052	18.552	19.552	-0.056524								0	0	0	0.35985	1	2133	2133		10.183	4.4515	1		+		28762	15489	16636	16637	35417	35417					0.06017576147883119
LYLGKQVFF	9	Unmodified	_LYLGKQVFF_					0	0	0		ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7637939453125	2	557.81841	1113.62227	0.53753	0.00029985	4.0972	0.0022855	4.6348	0.0025854	557.8203827216606	53.76	0.45712	53.76	53.648	54.105	0					25	16	2	0	0	0	0.24542	1	12792	12792		14.582	3.4672	1	155760			28763	6826	16637	16638	35418	35418					0.07000094379418442
LYLGKQVFF	9	Unmodified	_LYLGKQVFF_					0	0	0		ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.763671875	2	557.81841	1113.62227	0.24677	0.00013765	4.3205	0.0024101	4.5673	0.0025477	557.8202196943726	53.749	0.47027	53.805	53.638	54.108	0.056259					23	17	2	0	0	0	0.24542	1	12771	12771		14.582	7.2925	1	149120			28764	6826	16637	16638	35419	35419					0.07000094379418442
LYLGKQVFF	9	Unmodified	_LYLGKQVFF_					0	0	0		ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7637329101562	2	557.81841	1113.62227	0.40168	0.00022407	-0.074997	-4.1835E-05	0.32669	0.00018223	558.3195613256635	54.034	0.41834	54.018	53.833	54.251	-0.015923					19	14	2	0	0	0	0.24542	1	12856	12856		14.582	5.1986	1	239540			28765	6826	16637	16638	35420	35420					0.07000094379418442
LYLGLFNRL	9	Unmodified	_LYLGLFNRL_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.829833984375	2	554.829309	1107.64407	0.43155	0.00023944	0.017583	9.7554E-06	0.44913	0.00024919	554.8291849701818	75.115	0.77798	75.115	74.871	75.649	0					74	27	4	0	0	0	0.0032391	2	19264	19264;19310		100.37	42.9	1	1331600			28766	5647	16638	16639	35421;35422	35421					0.09454899127990757
LYLGLFNRL	9	Unmodified	_LYLGLFNRL_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.8291625976562	2	554.829309	1107.64407	0.36251	0.00020113	0.036707	2.0366E-05	0.39922	0.0002215	554.8291964471982	75.112	0.91753	75.164	74.89	75.807	0.052368					85	33	4	0	0	0	0.0041925	2	19250	19250;19301		92.822	41.967	1	1339700			28767	5647	16638	16639	35423;35424	35423					0.09454899127990757
LYLGLFNRL	9	Unmodified	_LYLGLFNRL_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.8294067382812	2	554.829309	1107.64407	0.51012	0.00028303	-0.093679	-5.1976E-05	0.41644	0.00023105	554.8291445885413	75.167	0.82267	75.136	74.868	75.69	-0.031487					69	30	3	0	0	0	0.0017972	2	19280	19280;19334		112.59	55.122	1	1112200			28768	5647	16638	16639	35425;35426	35425					0.09454899127990757
LYLGMTPSYA	10	Unmodified	_LYLGMTPSYA_					0	0	0			REV__ENSG00000030066|ENST00000378460|NUP160	REV__ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2771606445312	2	558.275718	1114.53688	0.35131	0.00019613	0.47163	0.0002633	0.82294	0.00045943	558.2758468721717	71.493	0.53455	71.493	71.183	71.718	0					34	18	2	0	0	0	0.20278	2	18208	18161;18208		32.305	0	1	544040	+		28769	13491	16639	16640	35427;35428	35428					-0.015804388685182857
LYLGMWFF	8	Unmodified	_LYLGMWFF_					0	0	0			REV__ENSG00000172572|ENST00000359062|PDE3A	REV__ENSG00000172572|ENST00000359062|PDE3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8632202148438	2	538.767332	1075.52011	0.26116	0.0001407	1.1941	0.00064333	1.4552	0.00078403	538.7680134139756	76.213	0.89835	76.266	75.992	76.89	0.053413					58	31	3	0	0	0	0.33618	1	19668	19668		17.087	1.2394	1	302170	+		28770	17723	16640	16641	35429	35429					-0.014628949638563427
LYLGRAEEF	9	Unmodified	_LYLGRAEEF_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2852783203125	2	549.284931	1096.55531	0.76591	0.0004207	-0.38851	-0.0002134	0.37741	0.0002073	549.2849229263389	50.87	0.99627	50.87	50.569	51.565	0					87	36	4	0	0	0	0.0028542	2	11852	11803;11852		103.42	35.339	1	2970800			28771	558	16641	16642	35430;35431	35431					0.010894390976545765
LYLGRAEEF	9	Unmodified	_LYLGRAEEF_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2847290039062	2	549.284931	1096.55531	0.73745	0.00040507	-0.31162	-0.00017117	0.42583	0.0002339	549.2848824308096	50.861	0.95735	50.908	50.604	51.561	0.046574					87	35	4	0	0	0	0.0028542	2	11800	11800;11846		103.42	35.339	1	2879200			28772	558	16641	16642	35432;35433	35432					0.010894390976545765
LYLGRAEEF	9	Unmodified	_LYLGRAEEF_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2853393554688	2	549.284931	1096.55531	0.73954	0.00040622	-0.22145	-0.00012164	0.51809	0.00028458	549.2850218323441	50.966	1.0198	50.975	50.541	51.561	0.0095634					99	38	4	0	0	0	0.0016712	2	11861	11817;11861		114.2	36.052	1	3144200			28773	558	16641	16642	35434;35435	35435					0.010894390976545765
LYLGYVYV	8	Unmodified	_LYLGYVYV_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.8030090332031	2	495.270761	988.52697	0.6494	0.00032163	-0.87901	-0.00043535	-0.22961	-0.00011372	495.2700651992583	56.866	0.44203	56.847	56.7	57.142	-0.019081					28	15	3	0	0	0	0.31651	1	13729	13729		24.21	6.075	1	415870	+		28774	13520	16642	16643	35436	35436					0.032247411883759014
LYLHYLGLL	9	Unmodified	_LYLHYLGLL_					0	0	0		ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.8079833984375	2	552.826235	1103.63792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.029	1	72.085	71.585	72.585	0.056572								0	0	0	0.22457	1	18333	18333		14.582	2.341	1				28775	8746	16643	16644	35437	35437					0.09024380896471484
LYLIYHFT	8	Unmodified	_LYLIYHFT_					0	0	0			REV__ENST00000339438.10_1_1:115260407-115260479:-|nuORF	REV__ENST00000339438.10_1_1:115260407-115260479:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8201293945312	2	535.289485	1068.56442	0.54669	0.00029264	0.18945	0.00010141	0.73614	0.00039405	535.2896043049342	45.284	0.7655	45.345	44.999	45.764	0.060688					37	26	2	0	0	0	0.31375	1	10073	10073		26.341	0	1	400810	+		28776	20096	16644	16645	35438	35438					0.032878324539979076
LYLIYHFT	8	Unmodified	_LYLIYHFT_					0	0	0			REV__ENST00000339438.10_1_1:115260407-115260479:-|nuORF	REV__ENST00000339438.10_1_1:115260407-115260479:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8208618164062	2	535.289485	1068.56442	0.56526	0.00030258	-0.11118	-5.9514E-05	0.45408	0.00024306	535.2894766396378	45.239	0.56449	45.309	45.01	45.575	0.069187					32	20	2	0	0	0	0.26518	1	10118	10118		42.968	0	1	357030	+		28777	20096	16644	16645	35439	35439					0.032878324539979076
LYLKALEGF	9	Unmodified	_LYLKALEGF_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3031616210938	2	527.302593	1052.59063	0.4748	0.00025036	0.39174	0.00020656	0.86654	0.00045693	527.3028061866288	67.061	1.2828	67.061	66.659	67.942	0					110	44	4	0	0	0	0.0073667	1	16815	16815		96.367	48.021	1	2290000			28778	2697	16645	16646	35440	35440					0.06644101625443
LYLKALEGF	9	Unmodified	_LYLKALEGF_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.79248046875	2	527.302593	1052.59063	0.40179	0.00021186	0.403	0.0002125	0.80479	0.00042437	527.3027079192711	66.978	1.1239	67.062	66.684	67.808	0.083832					108	39	4	0	0	0	0.0046246	1	16773	16773		89.401	45.542	1	2283300			28779	2697	16645	16646	35441	35441					0.06644101625443
LYLKALEGF	9	Unmodified	_LYLKALEGF_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7926635742188	2	527.302593	1052.59063	0.31474	0.00016596	0.50929	0.00026855	0.82403	0.00043452	527.302810008474	67.068	1.1238	67.052	66.687	67.811	-0.016296					102	39	4	0	0	0	0.018449	1	16793	16793		66.457	30.33	1	2247300			28780	2697	16645	16646	35442	35442					0.06644101625443
LYLKCILIFF	10	Unmodified	_LYLKCILIFF_					0	0	0		ENST00000554011.5_1_14:57675329-57698504:-|nuORF	ENST00000554011.5_1_14:57675329-57698504:-|nuORF	ENST00000554011.5_1_14:57675329-57698504:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.56280517578125	3	424.919006	1271.73519	-0.7144	-0.00030356	0.076957	3.27E-05	-0.63744	-0.00027086	424.91858774671175	35.393	0.45837	35.393	35.033	35.492	0					20	16	2	0	0	0	0.318	1	7040	7040		3.8763	0.80407	1	102550			28781	11828	16646	16647	35443	35443					0.11019026781082175
LYLKDNDSF	9	Unmodified	_LYLKDNDSF_					0	0	0			REV__ENST00000479681.5_1_1:151317580-151318796:-|nuORF	REV__ENST00000479681.5_1_1:151317580-151318796:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.239501953125	2	557.774396	1113.53424	0.55495	0.00030954	-2.05	-0.0011434	-1.495	-0.00083389	558.2746747554359	65.705	0.27525	65.705	65.545	65.821	0					13	9	2	0	0	0	0.2322	1	16375	16375		20.454	0	1	118950	+		28782	16174	16647	16648	35444	35444					-0.017985710018592727
LYLKDNDSF	9	Unmodified	_LYLKDNDSF_					0	0	0			REV__ENST00000479681.5_1_1:151317580-151318796:-|nuORF	REV__ENST00000479681.5_1_1:151317580-151318796:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2394409179688	2	557.774396	1113.53424	0.42937	0.00023949	-1.6724	-0.00093284	-1.2431	-0.00069335	557.7730258243998	65.681	0.32272	65.67	65.504	65.827	-0.011337					19	11	2	0	0	0	0.1939	1	16344	16344		30.637	0	1	185970	+		28783	16174	16647	16648	35445	35445					-0.017985710018592727
LYLKEVTKF	9	Unmodified	_LYLKEVTKF_					0	0	0		ENSG00000116954|ENST00000373001|RRAGC;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000025039|ENST00000369415|RRAGD	ENSG00000116954|ENST00000373001|RRAGC	ENSG00000116954|ENST00000373001|RRAGC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8366088867188	2	570.8368	1139.65905	0.54574	0.00031153	0.035159	2.007E-05	0.5809	0.0003316	570.8366689358405	46.913	0.67675	46.913	46.703	47.38	0					47	23	3	0	0	0	0.0019382	1	10601	10601		110.79	49.435	1	992290			28784	2763	16648	16649	35446	35446					0.09480346205327805
LYLKEVTKF	9	Unmodified	_LYLKEVTKF_					0	0	0		ENSG00000116954|ENST00000373001|RRAGC;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000025039|ENST00000369415|RRAGD	ENSG00000116954|ENST00000373001|RRAGC	ENSG00000116954|ENST00000373001|RRAGC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8367309570312	2	570.8368	1139.65905	0.4976	0.00028405	0.25069	0.0001431	0.74829	0.00042715	570.8368340864391	46.796	0.776	46.848	46.578	47.354	0.052574					56	28	3	0	0	0	0.0013864	2	10578	10534;10578		117.84	49.757	1	854780			28785	2763	16648	16649	35447;35448	35448					0.09480346205327805
LYLKEVTKF	9	Unmodified	_LYLKEVTKF_					0	0	0		ENSG00000116954|ENST00000373001|RRAGC;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000025039|ENST00000369415|RRAGD	ENSG00000116954|ENST00000373001|RRAGC	ENSG00000116954|ENST00000373001|RRAGC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8373413085938	2	570.8368	1139.65905	0.54501	0.00031111	-0.035762	-2.0414E-05	0.50924	0.0002907	570.8367103159685	46.824	0.65281	46.878	46.631	47.284	0.054371					40	22	2	0	0	0	0.0031966	2	10600	10550;10600		100.71	29.575	1	884250			28786	2763	16648	16649	35449;35450	35450					0.09480346205327805
LYLKMKPV	8	Unmodified	_LYLKMKPV_					0	0	0		nc|ENSG00000166349|P15918-2|RAG1;ENSG00000166349|ENST00000299440|RAG1	nc|ENSG00000166349|P15918-2|RAG1	nc|ENSG00000166349|P15918-2|RAG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.30419921875	2	496.304081	990.59361	0.41687	0.0002069	-0.18064	-8.9651E-05	0.23624	0.00011725	496.30387669744533	74.068	3.1764	74.068	73.191	76.367	0					302	112	4	0	0	0	0.45942	1	19190	19190		2.5775	0	1	4670700			28787	6067	16649	16650	35451	35451					0.09793653478629949
LYLKMKPV	8	Unmodified	_LYLKMKPV_					0	0	0		nc|ENSG00000166349|P15918-2|RAG1;ENSG00000166349|ENST00000299440|RAG1	nc|ENSG00000166349|P15918-2|RAG1	nc|ENSG00000166349|P15918-2|RAG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3041076660156	2	496.304081	990.59361	0.356	0.00017669	-0.097131	-4.8207E-05	0.25887	0.00012848	496.303888308668	73.998	3.3109	74.051	73.17	76.481	0.052361					303	118	4	0	0	0	0.44842	1	19594	19594		6.3541	0.59368	1	3943000			28788	6067	16649	16650	35452	35452					0.09793653478629949
LYLKMKPV	8	Unmodified	_LYLKMKPV_					0	0	0		nc|ENSG00000166349|P15918-2|RAG1;ENSG00000166349|ENST00000299440|RAG1	nc|ENSG00000166349|P15918-2|RAG1	nc|ENSG00000166349|P15918-2|RAG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3042297363281	2	496.304081	990.59361	0.49459	0.00024547	-0.57538	-0.00028556	-0.080785	-4.0094E-05	496.3037124227817	75.276	2.0084	75.245	74.951	76.96	-0.031487					157	74	3	0	0	0	0.44842	1	19598	19598		6.3541	0.59368	1	2632000			28789	6067	16649	16650	35453	35453					0.09793653478629949
LYLKPLSGGK	10	Unmodified	_LYLKPLSGGK_					0	0	0		nc|ENSG00000056586|Q9HBD1-4|RC3H2;ENSG00000056586|ENST00000357244|RC3H2;nc|ENSG00000056586|Q9HBD1-5|RC3H2;RC3H2|p.F433Lfs*13|1|0.33|ENSG00000056586|chr9:122877497-122877497|A/-|frameshift_variant;nc|ENSG00000056586|Q9HBD1-2|RC3H2;nc|ENSG00000056586|Q9HBD1-3|RC3H2	nc|ENSG00000056586|Q9HBD1-4|RC3H2	nc|ENSG00000056586|Q9HBD1-4|RC3H2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7107543945312	2	538.329142	1074.64373	0.60747	0.00032702	1.2848	0.00069167	1.8923	0.0010187	538.3300248741031	66.108	0.63014	66.192	65.942	66.572	0.083832					49	22	3	0	0	0	0.31119	1	16591	16591		13.615	1.3742	1	692490			28790	713	16650	16651	35454	35454					0.10939479408125408
LYLKPLSGGK	10	Unmodified	_LYLKPLSGGK_					0	0	0		nc|ENSG00000056586|Q9HBD1-4|RC3H2;ENSG00000056586|ENST00000357244|RC3H2;nc|ENSG00000056586|Q9HBD1-5|RC3H2;RC3H2|p.F433Lfs*13|1|0.33|ENSG00000056586|chr9:122877497-122877497|A/-|frameshift_variant;nc|ENSG00000056586|Q9HBD1-2|RC3H2;nc|ENSG00000056586|Q9HBD1-3|RC3H2	nc|ENSG00000056586|Q9HBD1-4|RC3H2	nc|ENSG00000056586|Q9HBD1-4|RC3H2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	538.329142	1074.64373	0.54993	0.00029604	1.8245	0.0009822	2.3745	0.0012782	538.3301526329301	66.238	0.48965	66.224	65.97	66.46	-0.013596	0.01624	0.00025597	NaN	13.615	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	688010			28791	713	16650	16651							0.10939479408125408
LYLKVAELL	9	Unmodified	_LYLKVAELL_					0	0	0		ENSG00000177169|ENST00000321867|ULK1;ENST00000540647.5_1_12:132402872-132405903:+|nuORF;ENST00000544718.1_1_12:132403795-132404230:+|nuORF	ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2312622070312	2	531.333893	1060.65323	0.57689	0.00030652	-0.13307	-7.0705E-05	0.44382	0.00023582	531.3338602125161	72.209	0.54297	72.209	72.017	72.56	0					25	19	2	0	0	0	0.20881	1	18358	18358		21.537	0	1	150220			28792	6967	16651	16652	35455	35455					0.12533247693659177
LYLKVKGNVF	10	Unmodified	_LYLKVKGNVF_					0	0	0		ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.8582153320312	2	590.858067	1179.70158	0.53781	0.00031777	-0.16704	-9.8695E-05	0.37077	0.00021907	590.8579289749988	48.594	1.1038	48.594	48.358	49.462	0					88	39	4	0	0	0	0.00021882	1	11169	11169		131.27	35.157	1	3617300			28793	10449;2172	16652	16653	35456	35456					0.118917413335339
LYLKVKGNVF	10	Unmodified	_LYLKVKGNVF_					0	0	0		ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.8580322265625	2	590.858067	1179.70158	0.6305	0.00037253	-0.14516	-8.5768E-05	0.48534	0.00028677	590.8578489340528	48.604	1.1786	48.649	48.388	49.566	0.044891					94	42	4	0	0	0	0.001143	1	11196	11196		118.89	43.134	1	3096800			28794	10449;2172	16652	16653	35457	35457					0.118917413335339
LYLKVKGNVF	10	Unmodified	_LYLKVKGNVF_					0	0	0		ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF	ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.8579711914062	2	590.858067	1179.70158	0.48672	0.00028758	-0.085799	-5.0695E-05	0.40092	0.00023689	590.8579096039108	48.532	0.87613	48.564	48.333	49.209	0.032047					66	31	4	0	0	0	0.00057	1	11147	11147		126.57	44.037	1	2360100			28795	10449;2172	16652	16653	35458	35458					0.118917413335339
LYLKYWELV	9	Unmodified	_LYLKYWELV_					0	0	0		ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2365417480469	3	409.565509	1225.6747	0.2309	9.4568E-05	-1.6133	-0.00066077	-1.3824	-0.0005662	409.56484055218743	33.785	0.56249	33.785	33.512	34.074	0					29	20	2	0	0	0	0.25817	1	6536	6536		6.6304	0.0069188	1	93156			28796	5841	16653	16654	35459	35459					0.07088632722366128
LYLKYWELV	9	Unmodified	_LYLKYWELV_					0	0	0		ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	409.565509	1225.6747	0.50453	0.00020664	-2.0391	-0.00083515	-1.5346	-0.00062851	409.56463982318286	33.615	0.52242	33.682	33.432	33.955	0.06636	-0.040139	-0.00039246	NaN	10.151	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92319			28797	5841	16653	16654							0.07088632722366128
LYLLASSTLN	10	Unmodified	_LYLLASSTLN_					0	0	0			REV__ENST00000163416.6_1_14:93305965-93306046:+|nuORF	REV__ENST00000163416.6_1_14:93305965-93306046:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7936401367188	2	547.808239	1093.60193	1.1375	0.00062316	-4.2424	-0.002324	-3.1049	-0.0017009	547.8040276274592	47.168	0.65049	47.222	46.972	47.622	0.054375					68	23	5	0	0	0	0.30958	1	10633	10633		19.257	3.4098	1	956980	+		28798	19383	16654	16655	35460	35460					0.058868789289590495
LYLLDEGPGF	10	Unmodified	_LYLLDEGPGF_					0	0	0			REV__nc|ENSG00000076555|O00763-3|ACACB	REV__nc|ENSG00000076555|O00763-3|ACACB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3439331054688	2	562.28714	1122.55973	0.39312	0.00022105	-0.63707	-0.00035821	-0.24394	-0.00013717	562.2863036289523	82.641	0.92522	82.641	81.919	82.844	0					37	33	2	0	0	0	0.31267	1	21595	21595		14.838	6.245	1	141200	+		28799	13831	16655	16656	35461	35461					0.0033490352057015116
LYLLHTIT	8	Unmodified	_LYLLHTIT_					0	0	0			REV__ENSG00000099204|ENST00000533213|ABLIM1	REV__ENSG00000099204|ENST00000533213|ABLIM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7996520996094	2	487.289485	972.564418	0.25023	0.00012193	0.20839	0.00010155	0.45862	0.00022348	487.2898347165193	118.05	0.36733	118.07	117.9	118.26	0.023468					58	45	2	0	0	0	0.45169	1	30567	30567		5.2307	0	1	22018	+		28800	14123	16656	16657	35462	35462					0.07703832454001258
LYLLHTIT	8	Unmodified	_LYLLHTIT_					0	0	0			REV__ENSG00000099204|ENST00000533213|ABLIM1	REV__ENSG00000099204|ENST00000533213|ABLIM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7999572753906	2	487.289485	972.564418	0.25013	0.00012189	0.18889	9.2046E-05	0.43903	0.00021393	487.28980272119804	114.63	0.42061	114.65	114.32	114.74	0.016708					70	51	2	0	0	0	0.344	1	29797	29797		2.5775	0.27475	1	36417	+		28801	14123	16656	16657	35463	35463					0.07703832454001258
LYLLHTIT	8	Unmodified	_LYLLHTIT_					0	0	0			REV__ENSG00000099204|ENST00000533213|ABLIM1	REV__ENSG00000099204|ENST00000533213|ABLIM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	487.289485	972.564418	0.056988	2.777E-05	0.79419	0.000387	0.85117	0.00041477	487.29005990677393	118.13	0.10394	118.11	118.04	118.15	-0.024147	0.016854	0.00037918	NaN	5.2307	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18845	+		28802	14123	16656	16657							0.07703832454001258
LYLLLGIDK	9	Unmodified	_LYLLLGIDK_					0	0	0		ENST00000440496.5_1_X:102100932-102139114:+|nuORF	ENST00000440496.5_1_X:102100932-102139114:+|nuORF	ENST00000440496.5_1_X:102100932-102139114:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.3079833984375	2	524.326068	1046.63758	0.52624	0.00027592	-0.77233	-0.00040495	-0.24609	-0.00012903	524.3255628698315	66.182	0.76866	66.168	65.945	66.714	-0.013588					63	27	3	0	0	0	0.25314	1	16637	16637		15.847	1.0089	1	1111100			28803	10550	16657	16658	35464	35464					0.11612961176592762
LYLLLIQTF	9	Unmodified	_LYLLLIQTF_					0	0	0		ENST00000366691.3_1_1:228880485-228880638:+|nuORF	ENST00000366691.3_1_1:228880485-228880638:+|nuORF	ENST00000366691.3_1_1:228880485-228880638:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3436279296875	2	562.341718	1122.66888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.313	1	77.313	76.813	77.813	0								0	0	0	0.24311	1	19950	19950		8.5933	0.68312	1				28804	9711	16658	16659	35465	35465					0.11245534210684127
LYLLLIQTF	9	Unmodified	_LYLLLIQTF_					0	0	0		ENST00000366691.3_1_1:228880485-228880638:+|nuORF	ENST00000366691.3_1_1:228880485-228880638:+|nuORF	ENST00000366691.3_1_1:228880485-228880638:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3441162109375	2	562.341718	1122.66888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.465	1	77.465	76.965	77.965	0								0	0	0	0.24311	1	19997	19997		8.5933	3.8373	1				28805	9711	16658	16659	35466	35466					0.11245534210684127
LYLLLIQTF	9	Unmodified	_LYLLLIQTF_					0	0	0		ENST00000366691.3_1_1:228880485-228880638:+|nuORF	ENST00000366691.3_1_1:228880485-228880638:+|nuORF	ENST00000366691.3_1_1:228880485-228880638:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3438720703125	2	562.341718	1122.66888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.376	1	77.431	76.931	77.931	0.055412								0	0	0	0.24311	1	19960	19960		8.5933	3.3626	1				28806	9711	16658	16659	35467	35467					0.11245534210684127
LYLLLIQTF	9	Unmodified	_LYLLLIQTF_					0	0	0		ENST00000366691.3_1_1:228880485-228880638:+|nuORF	ENST00000366691.3_1_1:228880485-228880638:+|nuORF	ENST00000366691.3_1_1:228880485-228880638:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3436889648438	2	562.341718	1122.66888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.543	1	77.598	77.098	78.098	0.055412								0	0	0	0.24311	1	20011	20011		8.5933	0.68312	1				28807	9711	16658	16659	35468	35468					0.11245534210684127
LYLLLIQTF	9	Unmodified	_LYLLLIQTF_					0	0	0		ENST00000366691.3_1_1:228880485-228880638:+|nuORF	ENST00000366691.3_1_1:228880485-228880638:+|nuORF	ENST00000366691.3_1_1:228880485-228880638:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3425903320312	2	562.341718	1122.66888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.007	1	84.084	83.584	84.584	0.077095								0	0	0	0.25499	1	21996	21996		4.756	0.81161	1				28808	9711	16658	16659	35469	35469					0.11245534210684127
LYLLNTTKL	9	Unmodified	_LYLLNTTKL_					0	0	0		ENSG00000076242|ENST00000231790|MLH1;nc|ENSG00000076242|P40692-2|MLH1;nc|ENSG00000076242|P40692-3|MLH1	ENSG00000076242|ENST00000231790|MLH1	ENSG00000076242|ENST00000231790|MLH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8287353515625	2	539.828975	1077.6434	0.15887	8.5761E-05	-0.3276	-0.00017685	-0.16873	-9.1087E-05	539.828383950667	60.271	0.3765	60.271	60.065	60.441	0					25	13	2	0	0	0	0.00019464	1	14707	14707		133.05	51.162	1	2177100			28809	1060	16659	16660	35470	35470					0.10768059688257381
LYLLNTTKL	9	Unmodified	_LYLLNTTKL_					0	0	0		ENSG00000076242|ENST00000231790|MLH1;nc|ENSG00000076242|P40692-2|MLH1;nc|ENSG00000076242|P40692-3|MLH1	ENSG00000076242|ENST00000231790|MLH1	ENSG00000076242|ENST00000231790|MLH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8287353515625	2	539.828975	1077.6434	0.093469	5.0457E-05	0.1959	0.00010575	0.28937	0.00015621	539.8286652027591	60.329	0.93294	60.424	59.99	60.923	0.095093					91	33	4	0	0	0	0.0028032	1	14659	14659		103.82	28.063	1	2048300			28810	1060	16659	16660	35471	35471					0.10768059688257381
LYLLNTTKL	9	Unmodified	_LYLLNTTKL_					0	0	0		ENSG00000076242|ENST00000231790|MLH1;nc|ENSG00000076242|P40692-2|MLH1;nc|ENSG00000076242|P40692-3|MLH1	ENSG00000076242|ENST00000231790|MLH1	ENSG00000076242|ENST00000231790|MLH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8287353515625	2	539.828975	1077.6434	0.53229	0.00028735	0.042737	2.3071E-05	0.57503	0.00031042	540.3303996780804	60.417	0.83886	60.405	59.997	60.836	-0.011486					79	30	4	0	0	0	0.0008224	2	14693	14693;14722		125.04	58.581	1	3214300			28811	1060	16659	16660	35472;35473	35472					0.10768059688257381
LYLLSNSSFS	10	Unmodified	_LYLLSNSSFS_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.3111572265625	2	565.790047	1129.56554	0.45666	0.00025837	1.2089	0.00068396	1.6655	0.00094233	565.7906014102242	48.362	0.21109	48.362	48.268	48.48	0					9	6	2	0	0	0	0.33268	1	11071	11071		15.847	2.8047	1	190800			28812	7148	16660	16661	35474	35474					0.005940020322441342
LYLMPLGIY	9	Unmodified	_LYLMPLGIY_					0	0	0		ENSG00000178795|ENST00000315938|GDPD4;nc|ENSG00000178795|Q6W3E5|GDPD4	ENSG00000178795|ENST00000315938|GDPD4	ENSG00000178795|ENST00000315938|GDPD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7691040039062	2	541.801371	1081.58819	0.54417	0.00029483	2.2442	0.0012159	2.7883	0.0015107	541.8029642993438	58.026	0.39999	58.111	57.738	58.138	0.085617					25	14	3	0	0	0	0.22431	1	13997	13997		20.871	1.4322	1	360410			28813	7077	16661	16662	35475	35475					0.05065929896159105
LYLMPLGIY	9	Unmodified	_LYLMPLGIY_					0	0	0		ENSG00000178795|ENST00000315938|GDPD4;nc|ENSG00000178795|Q6W3E5|GDPD4	ENSG00000178795|ENST00000315938|GDPD4	ENSG00000178795|ENST00000315938|GDPD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7689819335938	2	541.801371	1081.58819	0.85302	0.00046217	1.7783	0.00096348	2.6313	0.0014256	541.8020723157415	58.237	0.2406	58.22	58.06	58.3	-0.0172					17	8	3	0	0	0	0.22431	1	14070	14070		20.871	2.7362	1	331910			28814	7077	16661	16662	35476	35476					0.05065929896159105
LYLNDFEV	8	Unmodified	_LYLNDFEV_					0	0	0			REV__XRN2|p.M319Kfs*12|1|0.04|ENSG00000088930|chr20:21333723-21333724|-/GAAGAACATT|frameshift_variant	REV__XRN2|p.M319Kfs*12|1|0.04|ENSG00000088930|chr20:21333723-21333724|-/GAAGAACATT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7890625	2	506.752933	1011.49131	0.30284	0.00015347	1.3397	0.00067889	1.6425	0.00083236	507.2558808356886	80.723	0.18608	80.696	80.573	80.759	-0.026825					9	6	2	0	0	0	0.33993	1	20948	20948		16.942	0	1	105450	+		28815	14019	16662	16663	35477	35477					-0.01397341059282553
LYLNKAVNF	9	Unmodified	_LYLNKAVNF_					0	0	0		nc|ENSG00000089091|Q9NVP4-2|DZANK1;nc|ENSG00000089091|Q9NVP4-4|DZANK1;nc|ENSG00000089091|Q9NVP4-5|DZANK1;nc|ENSG00000089091|Q9NVP4|DZANK1;ENSG00000089091|ENST00000699568|DZANK1	nc|ENSG00000089091|Q9NVP4-2|DZANK1	nc|ENSG00000089091|Q9NVP4-2|DZANK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.322265625	2	541.305667	1080.59678	0.72581	0.00039288	-0.54354	-0.00029422	0.18226	9.866E-05	541.3052784141843	54.287	0.27567	54.271	54.113	54.389	-0.015923					18	9	2	0	0	0	0.22596	1	12862	12862		15.847	5.7733	1	246920			28816	1347	16663	16664	35478	35478					0.059706198569983826
LYLNKAVNF	9	Unmodified	_LYLNKAVNF_					0	0	0		nc|ENSG00000089091|Q9NVP4-2|DZANK1;nc|ENSG00000089091|Q9NVP4-4|DZANK1;nc|ENSG00000089091|Q9NVP4-5|DZANK1;nc|ENSG00000089091|Q9NVP4|DZANK1;ENSG00000089091|ENST00000699568|DZANK1	nc|ENSG00000089091|Q9NVP4-2|DZANK1	nc|ENSG00000089091|Q9NVP4-2|DZANK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.305667	1080.59678	0.72704	0.00039355	0.48673	0.00026347	1.2138	0.00065702	541.3061428831934	54.08	0.37532	54.08	53.946	54.322	0	-0.074618	0.00055855	NaN	15.847	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185310			28817	1347	16663	16664							0.059706198569983826
LYLNKAVNF	9	Unmodified	_LYLNKAVNF_					0	0	0		nc|ENSG00000089091|Q9NVP4-2|DZANK1;nc|ENSG00000089091|Q9NVP4-4|DZANK1;nc|ENSG00000089091|Q9NVP4-5|DZANK1;nc|ENSG00000089091|Q9NVP4|DZANK1;ENSG00000089091|ENST00000699568|DZANK1	nc|ENSG00000089091|Q9NVP4-2|DZANK1	nc|ENSG00000089091|Q9NVP4-2|DZANK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	541.305667	1080.59678	0.59546	0.00032232	0.40636	0.00021996	1.0018	0.00054229	541.305474738839	54.05	0.39751	54.113	53.902	54.3	0.063206	-0.041816	0.00047154	NaN	15.847	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246490			28818	1347	16663	16664							0.059706198569983826
LYLNNLFP	8	Unmodified	_LYLNNLFP_					0	0	0			REV__ENST00000515407.1_1_5:102890375-102890540:-|nuORF	REV__ENST00000515407.1_1_5:102890375-102890540:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7816162109375	2	497.273835	992.533118	0.61717	0.0003069	-1.2106	-0.000602	-0.59344	-0.0002951	497.27340170296264	40.028	0.50637	40.121	39.777	40.284	0.09267					21	17	2	0	0	0	0.33995	1	8455	8455		15.768	1.1865	1	197990	+		28819	21841	16664	16665	35479	35479					0.036552594199065425
LYLNYATVAA	10	Unmodified	_LYLNYATVAA_					0	0	0		nc|ENSG00000215440|Q8NDH3-5|NPEPL1;nc|ENSG00000215440|Q8NDH3-4|NPEPL1;ENSG00000215440|ENST00000356091|NPEPL1;ENST00000530122.1_1_20:57266543-57280604:+|nuORF;ENST00000529976.5_1_20:57268807-57287813:+|nuORF;ENST00000527587.5_1_20:57268807-57288710:+|nuORF;nc|ENSG00000215440|Q8NDH3-3|NPEPL1;nc|ENSG00000215440|Q8NDH3-2|NPEPL1	nc|ENSG00000215440|Q8NDH3-5|NPEPL1	nc|ENSG00000215440|Q8NDH3-5|NPEPL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.759033203125	2	549.795132	1097.57571	0.59166	0.00032529	2.0422	0.0011228	2.6338	0.0014481	550.2986231856256	79.303	0.19225	79.364	79.201	79.394	0.061417					13	9	2	0	0	0	0.3156	1	20532	20532		10.824	3.5347	1	79177			28820	8408	16665	16666	35480	35480					0.030826097574845335
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7941284179688	2	575.794601	1149.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.871	1	94.869	94.369	95.369	-0.0020142								0	0	0	2.574E-06	1	25324	25324		117.6	69.253	1				28821	4044	16666	16667	35481	35481					0.005843953885914743
LYLPSFFTY	9	Unmodified	_LYLPSFFTY_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7946166992188	2	575.794601	1149.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.015	1	95.013	94.513	95.513	-0.0020142								0	0	0	1.1608E-11	1	25369	25369		161.89	104.42	1				28822	4044	16666	16667	35482	35482					0.005843953885914743
LYLPTLTHF	9	Unmodified	_LYLPTLTHF_					0	0	0		ENST00000537473.2_1_12:57058103-57058217:-|nuORF	ENST00000537473.2_1_12:57058103-57058217:-|nuORF	ENST00000537473.2_1_12:57058103-57058217:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8079833984375	2	552.808042	1103.60153	0.42669	0.00023588	-0.77253	-0.00042706	-0.34584	-0.00019118	552.8078331476908	72.106	0.67647	72.106	71.884	72.56	0					48	24	3	0	0	0	0.079066	1	18381	18381		42.095	17.421	1	397850			28823	11690	16667	16668	35483	35483					0.05387503999736509
LYLPTLTHF	9	Unmodified	_LYLPTLTHF_					0	0	0		ENST00000537473.2_1_12:57058103-57058217:-|nuORF	ENST00000537473.2_1_12:57058103-57058217:-|nuORF	ENST00000537473.2_1_12:57058103-57058217:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.8082885742188	2	552.808042	1103.60153	0.42121	0.00023285	-0.26986	-0.00014918	0.15135	8.3668E-05	552.8079602835522	72.218	0.78668	72.191	71.873	72.659	-0.027275					55	27	3	0	0	0	0.14099	1	18370	18370		42.095	14.466	1	420870			28824	11690	16667	16668	35484	35484					0.05387503999736509
LYLQDLWTTVI	11	Unmodified	_LYLQDLWTTVI_					0	0	0		ENSG00000157551|ENST00000398938|KCNJ15	ENSG00000157551|ENST00000398938|KCNJ15	ENSG00000157551|ENST00000398938|KCNJ15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.25286865234375	3	455.586861	1363.73875	-0.082901	-3.7768E-05	0.78758	0.00035881	0.70468	0.00032104	455.58717814575624	27.379	0.73441	27.368	27.132	27.867	-0.01156					47	25	2	0	0	0	0.3322	1	4664	4664		4.7159	0.30977	1	737090			28825	5313	16668	16669	35485	35485					0.07143368088622992
LYLQNNKIT	9	Unmodified	_LYLQNNKIT_					0	0	0		nc|ENSG00000171509|Q9HBX9-5|RXFP1;nc|ENSG00000171509|Q9HBX9-2|RXFP1;ENSG00000171509|ENST00000307765|RXFP1;nc|ENSG00000171509|Q9HBX9-3|RXFP1;nc|ENSG00000171509|Q9HBX9-4|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8394165039062	2	553.813856	1105.61316	0.73468	0.00040687	-0.8542	-0.00047307	-0.11952	-6.6193E-05	553.8131456683493	56.413	0.61013	56.492	56.273	56.883	0.078674					36	22	2	0	0	0	0.13898	1	13612	13612		29.082	5.061	1	849160			28826	6554	16669	16670	35486	35486					0.06457701023077789
LYLQNNKIT	9	Unmodified	_LYLQNNKIT_					0	0	0		nc|ENSG00000171509|Q9HBX9-5|RXFP1;nc|ENSG00000171509|Q9HBX9-2|RXFP1;ENSG00000171509|ENST00000307765|RXFP1;nc|ENSG00000171509|Q9HBX9-3|RXFP1;nc|ENSG00000171509|Q9HBX9-4|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8387451171875	2	553.813856	1105.61316	0.97376	0.00053928	-1.7475	-0.0009678	-0.77376	-0.00042852	553.8130240364403	56.595	0.51271	56.576	56.352	56.865	-0.019081					33	18	2	0	0	0	0.13898	1	13633	13633		43.858	2.0187	1	696360			28827	6554	16669	16670	35487	35487					0.06457701023077789
LYLQYNQVSF	10	Unmodified	_LYLQYNQVSF_					0	0	0		ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.8115234375	2	637.824421	1273.63429	0.70805	0.00045161	1.2973	0.00082742	2.0053	0.001279	637.8255428163461	85.584	0.38792	85.668	85.367	85.755	0.084251					20	14	2	0	0	0	0.37454	1	22499	22499		8.1555	1.5252	1	114540			28828	7589	16670	16671	35488	35488					0.008416663319394502
LYLQYTDETF	10	Unmodified	_LYLQYTDETF_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;chr3:149212698-149217866|281|14.11|0.21|6.05|-|ENST00000455472|CP,CP	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.8060302734375	2	646.805894	1291.59723	0.50078	0.00032391	-0.11626	-7.5196E-05	0.38452	0.00024871	646.8057760453966	71.675	2.0168	71.675	71.346	73.363	0					195	72	5	0	0	0	2.2394E-21	7	18227	18179;18227;18276;18319;18372;18440;18595		225.01	145.9	1	9025500			28829	632	16671	16672	35489;35490;35491;35492;35493;35494;35495	35490					-0.03690050004524892
LYLQYTDETF	10	Unmodified	_LYLQYTDETF_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;chr3:149212698-149217866|281|14.11|0.21|6.05|-|ENST00000455472|CP,CP	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.80615234375	2	646.805894	1291.59723	0.41367	0.00026756	-0.025694	-1.6619E-05	0.38798	0.00025095	646.805842789	71.606	2.1271	71.663	71.347	73.474	0.056572					220	77	5	0	0	0	2.3869E-20	7	18246	18198;18246;18291;18340;18402;18465;18557		209.87	167.91	1	8226200			28830	632	16671	16672	35496;35497;35498;35499;35500;35501;35502	35497					-0.03690050004524892
LYLQYTDETF	10	Unmodified	_LYLQYTDETF_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;chr3:149212698-149217866|281|14.11|0.21|6.05|-|ENST00000455472|CP,CP	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	646.8060302734375	2	646.805894	1291.59723	0.4491	0.00029048	-0.11281	-7.2967E-05	0.33629	0.00021751	646.8057900492687	71.723	1.8435	71.696	71.368	73.211	-0.027275					194	65	5	0	0	0	2.2394E-21	6	18219	18178;18219;18267;18319;18369;18429		225.01	139.37	1	9436600			28831	632	16671	16672	35503;35504;35505;35506;35507;35508	35504					-0.03690050004524892
LYLRCAQK	8	Unmodified	_LYLRCAQK_					0	0	0		nc|ENSG00000145014|Q2T9K0-4|TMEM44;ENSG00000145014|ENST00000347147|TMEM44;nc|ENSG00000145014|Q2T9K0-7|TMEM44;nc|ENSG00000145014|Q2T9K0-6|TMEM44;nc|ENSG00000145014|Q2T9K0|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.30963134765625	2	497.778762	993.542971	0.37196	0.00018515	0.27944	0.0001391	0.6514	0.00032425	497.77885780813347	41.634	1.0065	41.724	41.35	42.357	0.090248					66	40	2	0	0	0	0.31934	1	9059	9059		24.674	11.166	1	2663600			28832	4628	16672	16673	35509	35509					0.04594124153618395
LYLRPLTSF	9	Unmodified	_LYLRPLTSF_					0	0	0		nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3050537109375	2	555.321317	1108.62808	0.33068	0.00018364	0.059928	3.3279E-05	0.39061	0.00021692	555.3214257716434	66.847	0.79517	66.847	66.573	67.368	0					63	27	5	0	0	0	0.22883	2	16743	16743;16786		19.439	3.5918	1	746740			28833	12984	16673	16674	35510;35511	35510					0.07811192891063001
LYLRPLTSF	9	Unmodified	_LYLRPLTSF_					0	0	0		nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3053588867188	2	555.321317	1108.62808	0.30801	0.00017104	0.093638	5.1999E-05	0.40164	0.00022304	555.3213775068799	66.729	0.73012	66.813	66.544	67.274	0.083832					60	25	3	0	0	0	0.22883	1	16744	16744		19.439	3.5918	1	579930			28834	12984	16673	16674	35512	35512					0.07811192891063001
LYLRPLTSF	9	Unmodified	_LYLRPLTSF_					0	0	0		nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.30517578125	2	555.321317	1108.62808	0.086428	4.7995E-05	0.72114	0.00040046	0.80757	0.00044846	555.3216300361184	66.802	0.66733	66.788	66.572	67.239	-0.013596					67	23	4	0	0	0	0.22883	2	16735	16735;16787		19.439	3.5918	1	572800			28835	12984	16673	16674	35513;35514	35513					0.07811192891063001
LYLRRNNLEFI	11	Unmodified	_LYLRRNNLEFI_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.739990234375	3	484.277021	1449.80923	0.32411	0.00015696	2.5009	0.0012111	2.825	0.0013681	484.27899822368823	68.169	0.50194	68.15	67.868	68.37	-0.019157					30	17	3	0	0	0	0.3325	1	17083	17083		4.1166	1.4854	1	247460			28836	12630	16674	16675	35515	35515					0.10232086196947421
LYLRVREGQ	9	Unmodified	_LYLRVREGQ_					0	0	0			REV__AluSz6_dup14438|chr5:139542367-139542619:-|1.8405014544857128|0.0853088408311883|4.43|520.0|10|3|sense	REV__AluSz6_dup14438|chr5:139542367-139542619:-|1.8405014544857128|0.0853088408311883|4.43|520.0|10|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.8236694335938	2	567.324922	1132.63529	0.14648	8.3104E-05	4.0371	0.0022903	4.1836	0.0023734	567.8292244261291	51.745	1.0704	51.754	51.272	52.343	0.0095634					106	39	4	0	0	0	0.1854	1	12047	12047		32.305	0	1	1300900	+		28837	13102	16675	16676	35516	35516					0.07427925491515452
LYLSRFPF	8	Unmodified	_LYLSRFPF_					0	0	0		ENST00000540626.5_1_11:71714575-71718510:-|nuORF	ENST00000540626.5_1_11:71714575-71718510:-|nuORF	ENST00000540626.5_1_11:71714575-71718510:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.3368530273438	2	521.789653	1041.56475	0.46579	0.00024304	4.1726	0.0021772	4.6384	0.0024203	521.7931668163088	58.867	0.13989	58.853	58.777	58.917	-0.014267					6	4	2	0	0	0	0.33618	1	14287	14287		17.087	1.3183	1	84437			28838	11723	16676	16677	35517	35517					0.04563252173852561
LYLSRHTV	8	Unmodified	_LYLSRHTV_					0	0	0		ENSG00000171421|ENST00000505059|MRPL36	ENSG00000171421|ENST00000505059|MRPL36	ENSG00000171421|ENST00000505059|MRPL36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.79510498046875	2	494.782359	987.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.002	1	52.002	51.502	52.502	0								0	0	0	0.34752	1	12177	12177		15.768	1.1865	1				28839	6538	16677	16678	35518	35518					0.0558918002569726
LYLSRHTV	8	Unmodified	_LYLSRHTV_					0	0	0		ENSG00000171421|ENST00000505059|MRPL36	ENSG00000171421|ENST00000505059|MRPL36	ENSG00000171421|ENST00000505059|MRPL36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7950744628906	2	494.782359	987.550165	0.16375	8.102E-05	1.7618	0.0008717	1.9255	0.00095272	494.782786544367	52.195	0.29842	52.194	52.06	52.358	-0.00080872					20	10	3	0	0	0	0.33245	1	12190	12190		19.439	1.304	1	124330			28840	6538	16677	16678	35519	35519					0.0558918002569726
LYLSTEIWGS	10	Unmodified	_LYLSTEIWGS_					0	0	0		ENSG00000185662|ENST00000523047|SMIM23	ENSG00000185662|ENST00000523047|SMIM23	ENSG00000185662|ENST00000523047|SMIM23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3563842773438	2	584.797872	1167.58119	0.28769	0.00016824	0.23705	0.00013863	0.52474	0.00030687	585.2991161753514	79.812	0.48505	79.874	79.594	80.079	0.061417					30	17	2	0	0	0	0.30586	1	20724	20724		19.257	2.1441	1	243680			28841	7549	16678	16679	35520	35520					0.0041028854927844804
LYLSTEIWGS	10	Unmodified	_LYLSTEIWGS_					0	0	0		ENSG00000185662|ENST00000523047|SMIM23	ENSG00000185662|ENST00000523047|SMIM23	ENSG00000185662|ENST00000523047|SMIM23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3564453125	2	584.797872	1167.58119	0.37401	0.00021872	0.4161	0.00024333	0.79011	0.00046205	584.7983188630317	79.85	0.43973	79.821	79.644	80.084	-0.028931					32	15	3	0	0	0	0.30586	1	20713	20713		19.257	7.0163	1	230520			28842	7549	16678	16679	35521	35521					0.0041028854927844804
LYLTATHLL	9	Unmodified	_LYLTATHLL_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8082885742188	2	522.808042	1043.60153	0.53796	0.00028125	-0.71289	-0.0003727	-0.17493	-9.1457E-05	522.8076003733102	62.627	0.35126	62.627	62.424	62.776	0					28	12	3	0	0	0	0.00033636	1	15474	15474		120.45	0	1	344680			28843	4239	16679	16680	35522	35522					0.08147503999771288
LYLTATHLL	9	Unmodified	_LYLTATHLL_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8080444335938	2	522.808042	1043.60153	0.50761	0.00026538	-1.0145	-0.00053039	-0.50689	-0.00026501	522.8075877699274	62.573	0.41224	62.67	62.383	62.795	0.096985					24	14	2	0	0	0	0.088391	1	15462	15462		39.957	0	1	273840			28844	4239	16679	16680	35523	35523					0.08147503999771288
LYLTDIPASV	10	Unmodified	_LYLTDIPASV_					0	0	0			REV__LTR12C_dup692|chr4:69114298-69115807:-|5.576688884045835|0.1619943684727404|5.11|537.0|29|3|sense	REV__LTR12C_dup692|chr4:69114298-69115807:-|5.576688884045835|0.1619943684727404|5.11|537.0|29|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.765869140625	2	546.30279	1090.59103	0.55948	0.00030565	-2.6489	-0.0014471	-2.0894	-0.0011414	546.3016224612169	26.203	0.4696	26.181	25.97	26.439	-0.022236					36	16	3	0	0	0	0.31358	1	4259	4259		13.906	4.5229	1	102270	+		28845	22840	16680	16681	35524	35524					0.04935476554669549
LYLTIARQL	9	Unmodified	_LYLTIARQL_					0	0	0		nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21	nc|ENSG00000135108|O94952|FBXO21	nc|ENSG00000135108|O94952|FBXO21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.2920532226562	2	545.834591	1089.65463	0.85651	0.00046751	-1.3263	-0.00072391	-0.46974	-0.0002564	545.8338460652554	60.508	0.35541	60.604	60.423	60.778	0.095795					21	12	2	0	0	0	0.21538	1	14828	14828		20.415	2.2682	1	401060			28846	3844	16681	16682	35525	35525					0.11338881782421595
LYLTIARQL	9	Unmodified	_LYLTIARQL_					0	0	0		nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21	nc|ENSG00000135108|O94952|FBXO21	nc|ENSG00000135108|O94952|FBXO21	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	545.834591	1089.65463	0.79925	0.00043626	-1.4428	-0.00078751	-0.64351	-0.00035125	545.8337956908454	60.542	0.4048	60.542	60.359	60.764	0	-0.01901	-0.00010283	NaN	26.268	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	552310			28847	3844	16681	16682							0.11338881782421595
LYLTIARQL	9	Unmodified	_LYLTIARQL_					0	0	0		nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21	nc|ENSG00000135108|O94952|FBXO21	nc|ENSG00000135108|O94952|FBXO21	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	545.834591	1089.65463	0.99305	0.00054204	-1.2347	-0.00067395	-0.24167	-0.00013191	545.8339026091281	60.547	0.27478	60.538	60.461	60.735	-0.0094566	-0.023355	0.00012428	NaN	26.268	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463720			28848	3844	16681	16682							0.11338881782421595
LYLTSGAFRL	10	Unmodified	_LYLTSGAFRL_					0	0	0		ENST00000467839.5_1_20:48700476-48729665:-|nuORF	ENST00000467839.5_1_20:48700476-48729665:-|nuORF	ENST00000467839.5_1_20:48700476-48729665:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2960815429688	2	570.824224	1139.63389	0.39016	0.00022271	1.046	0.0005971	1.4362	0.00081982	570.8245014023087	57.655	0.18153	57.741	57.63	57.812	0.085621					9	6	2	0	0	0	0.31267	1	13924	13924		14.838	2.3067	1	133400			28849	10831	16682	16683	35526	35526					0.06966291402773095
LYLVAYAL	8	Unmodified	_LYLVAYAL_					0	0	0			REV__PADI3|p.T270Lfs*13|1|0.12|ENSG00000142619|chr1:17270388-17270401|ACTCTGCTGGACGA/-|frameshift_variant	REV__PADI3|p.T270Lfs*13|1|0.12|ENSG00000142619|chr1:17270388-17270401|ACTCTGCTGGACGA/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2834167480469	2	463.273304	924.532055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.653	1	89.744	89.244	90.244	0.090569								0	0	0	0.3683	1	23727	23727		6.3541	0	1		+		28850	16131	16683	16684	35527	35527					0.06677045050969355
LYLVAYAL	8	Unmodified	_LYLVAYAL_					0	0	0			REV__PADI3|p.T270Lfs*13|1|0.12|ENSG00000142619|chr1:17270388-17270401|ACTCTGCTGGACGA/-|frameshift_variant	REV__PADI3|p.T270Lfs*13|1|0.12|ENSG00000142619|chr1:17270388-17270401|ACTCTGCTGGACGA/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.2835388183594	2	463.273304	924.532055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.691	1	89.69	89.19	90.19	-0.00080872								0	0	0	0.3683	1	23731	23731		6.3541	0	1		+		28851	16131	16683	16684	35528	35528					0.06677045050969355
LYLVDQSFQ	9	Unmodified	_LYLVDQSFQ_					0	0	0			REV__ENST00000359933.5_1_14:96749930-96750203:-|nuORF	REV__ENST00000359933.5_1_14:96749930-96750203:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2721557617188	2	556.784764	1111.55498	0.77239	0.00043005	-0.17909	-9.9715E-05	0.5933	0.00033034	556.7847794322878	50.245	1.584	50.29	49.425	51.009	0.044891					193	58	4	0	0	0	0.30623	1	11754	11754		7.9102	0	1	5114700	+		28852	20247	16684	16685	35529	35529					0.0036601937779323634
LYLVEKHF	8	Unmodified	_LYLVEKHF_					0	0	0			REV__ENSG00000204952|ENST00000378079|FBXO47	REV__ENSG00000204952|ENST00000378079|FBXO47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7818603515625	2	524.794935	1047.57532	0.48274	0.00025334	-0.2292	-0.00012028	0.25355	0.00013306	524.794680056557	81.472	0.56487	81.472	81.204	81.769	0					53	24	3	0	0	0	0.39956	1	21295	21295		19.439	4.8573	1	108750	+		28853	18973	16685	16686	35530	35530					0.05343234828274035
LYLVEKHF	8	Unmodified	_LYLVEKHF_					0	0	0			REV__ENSG00000204952|ENST00000378079|FBXO47	REV__ENSG00000204952|ENST00000378079|FBXO47	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	524.794935	1047.57532	0.48274	0.00025334	-0.2292	-0.00012028	0.25355	0.00013306	524.794680056557	81.472	0.56487	81.472	81.204	81.769	0	0.0034615	-8.8508E-05	NaN	19.439	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108750	+		28854	18973	16685	16686							0.05343234828274035
LYLVEKHF	8	Unmodified	_LYLVEKHF_					0	0	0			REV__ENSG00000204952|ENST00000378079|FBXO47	REV__ENSG00000204952|ENST00000378079|FBXO47	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	524.794935	1047.57532	0.16554	8.6874E-05	-0.091191	-4.7857E-05	0.074348	3.9017E-05	524.7949212911024	81.388	0.4282	81.457	81.247	81.675	0.068993	-0.011979	5.634E-05	NaN	19.439	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173130	+		28855	18973	16685	16686							0.05343234828274035
LYLVEKHF	8	Unmodified	_LYLVEKHF_					0	0	0			REV__ENSG00000204952|ENST00000378079|FBXO47	REV__ENSG00000204952|ENST00000378079|FBXO47	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.794935	1047.57532	0.50654	0.00026583	-0.10412	-5.464E-05	0.40243	0.00021119	524.7949504574714	81.501	0.45762	81.477	81.228	81.685	-0.02404	0.008517	4.2774E-05	NaN	19.439	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158960	+		28856	18973	16685	16686							0.05343234828274035
LYLVLIFSF	9	Unmodified	_LYLVLIFSF_					0	0	0			REV__ENSG00000176219|ENST00000315519|OR11H6	REV__ENSG00000176219|ENST00000315519|OR11H6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2721557617188	2	557.830986	1113.64742	0.88522	0.0004938	3.3205	0.0018523	4.2058	0.0023461	557.8327843286124	50.594	0.29995	50.639	50.52	50.82	0.044891					13	10	2	0	0	0	0.24739	1	11754	11754		13.508	8.211	1	103250	+		28857	17927	16686	16687	35531	35531					0.0951414918199589
LYLVLLWFF	9	Unmodified	_LYLVLLWFF_					0	0	0			REV__nc|ENSG00000006576|Q8N3S3-6|PHTF2	REV__nc|ENSG00000006576|Q8N3S3-6|PHTF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.9119567871094	3	405.238844	1212.6947	-0.49541	-0.00020076	0.28866	0.00011698	-0.20674	-8.3781E-05	405.23886257883566	25.251	0.76659	25.219	24.833	25.599	-0.031408					53	26	3	0	0	0	0.25431	1	3984	3984		5.7319	0	1	146550	+		28858	13363	16687	16688	35532	35532					0.09686428452982909
LYLWDSKF	8	Unmodified	_LYLWDSKF_					0	0	0		ENST00000472839.6_1_12:92823387-92823534:+|nuORF	ENST00000472839.6_1_12:92823387-92823534:+|nuORF	ENST00000472839.6_1_12:92823387-92823534:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8059692382812	2	536.279118	1070.54368	0.61728	0.00033103	1.036	0.00055556	1.6532	0.00088659	536.7810779040065	72.797	0.4724	72.767	72.455	72.927	-0.029305					24	16	2	0	0	0	0.32778	1	18492	18492		20.871	14.665	1	180120			28859	10898	16688	16689	35533	35533					0.011232420743453986
LYLWMGSDN	9	Unmodified	_LYLWMGSDN_					0	0	0			REV__ENST00000554534.5_2_14:60582735-60588007:+|nuORF	REV__ENST00000554534.5_2_14:60582735-60588007:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7594604492188	2	549.749867	1097.48518	0.76066	0.00041817	-1.3987	-0.00076892	-0.63802	-0.00035075	550.2505937738023	78.35	0.75657	78.408	78.058	78.814	0.058151					35	27	2	0	0	0	0.21905	1	20241	20241		23.148	11.508	1	71361	+		28860	22234	16689	16690	35534	35534					-0.05966182562428912
LYLWSRPE	8	Unmodified	_LYLWSRPE_					0	0	0			REV__nc|ENSG00000177030|O75398-5|DEAF1	REV__nc|ENSG00000177030|O75398-5|DEAF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2640991210938	2	532.282192	1062.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.014	1	46.074	45.574	46.574	0.059834								0	0	0	0.35466	1	10330	10330		12.532	0	1		+		28861	17967	16690	16691	35535	35535					0.021057603058579843
LYLYVFHLSL	10	Unmodified	_LYLYVFHLSL_					0	0	0			REV__ENST00000392870.2_1_10:121214892-121215066:+|nuORF	REV__ENST00000392870.2_1_10:121214892-121215066:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.2120666503906	3	423.241025	1266.70125	0.10848	4.5913E-05	-1.0091	-0.00042707	-0.90058	-0.00038116	423.2404929685318	54.145	0.84624	54.209	53.876	54.722	0.063202					65	31	4	0	0	0	0.31207	1	12981	12981		17.443	8.4664	1	545070	+		28862	20600	16691	16692	35536	35536					0.0785632161371268
LYLYVFHLSL	10	Unmodified	_LYLYVFHLSL_					0	0	0			REV__ENST00000392870.2_1_10:121214892-121215066:+|nuORF	REV__ENST00000392870.2_1_10:121214892-121215066:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	423.241025	1266.70125	0.1944	8.2279E-05	-1.6366	-0.00069266	-1.4422	-0.00061038	423.24035097320893	54.395	0.51944	54.379	54.085	54.605	-0.015923	0.11567	-0.00026112	NaN	12.873	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	500890	+		28863	20600	16691	16692							0.0785632161371268
LYMASEILE	9	Unmodified	_LYMASEILE_					0	0	0			REV__nc|ENSG00000088298|Q9BV94-2|EDEM2	REV__nc|ENSG00000088298|Q9BV94-2|EDEM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.783935546875	2	534.767726	1067.5209	0.38239	0.00020449	2.0533	0.0010981	2.4357	0.0013026	534.7685726249111	86.825	0.40891	86.912	86.682	87.091	0.087097					22	16	2	0	0	0	0.24581	1	22819	22819		16.942	1.0951	1	111490	+		28864	14004	16692	16693	35537	35537					-0.010161451054727877
LYMDKFEEF	9	Oxidation (M)	_LYM(Oxidation (M))DKFEEF_		LYM(1)DKFEEF		LYM(93)DKFEEF	0	0	1		ENSG00000086712|ENST00000380122|TXLNG;nc|ENSG00000086712|Q9NUQ3-2|TXLNG;ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENSG00000086712|ENST00000380122|TXLNG	ENSG00000086712|ENST00000380122|TXLNG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.2755126953125	2	619.275915	1236.53728	0.3336	0.00020659	-0.26699	-0.00016534	0.066609	4.125E-05	619.2755336057069	53.081	0.88669	53.081	52.63	53.516	0					66	32	3	0	0	0	0.0041491	2	12462	12462;12524		93.166	70.43	1	1094700			28865	1285	16693	16694	35538;35539	35538		153			-0.07153063939381354
LYMDKFEEF	9	Oxidation (M)	_LYM(Oxidation (M))DKFEEF_		LYM(1)DKFEEF		LYM(83)DKFEEF	0	0	1		ENSG00000086712|ENST00000380122|TXLNG;nc|ENSG00000086712|Q9NUQ3-2|TXLNG;ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENSG00000086712|ENST00000380122|TXLNG	ENSG00000086712|ENST00000380122|TXLNG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.2749633789062	2	619.275915	1236.53728	0.37121	0.00022988	-0.24085	-0.00014915	0.13037	8.0734E-05	619.7771942596353	53.023	0.84605	53.079	52.663	53.509	0.056259					67	30	3	0	0	0	0.0073901	2	12413	12413;12470		83.429	59.408	1	1083500			28866	1285	16693	16694	35540;35541	35540		153			-0.07153063939381354
LYMDKFEEF	9	Oxidation (M)	_LYM(Oxidation (M))DKFEEF_		LYM(1)DKFEEF		LYM(93)DKFEEF	0	0	1		ENSG00000086712|ENST00000380122|TXLNG;nc|ENSG00000086712|Q9NUQ3-2|TXLNG;ENST00000445715.5_1_Y:21755293-21766003:+|nuORF	ENSG00000086712|ENST00000380122|TXLNG	ENSG00000086712|ENST00000380122|TXLNG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.2752685546875	2	619.275915	1236.53728	0.27484	0.0001702	-0.18332	-0.00011352	0.091521	5.6677E-05	619.2757984672974	53.312	0.95832	53.302	52.812	53.771	-0.0096054					63	35	2	0	0	0	0.0041491	2	12502	12502;12555		93.166	69.145	1	1139400			28867	1285	16693	16694	35542;35543	35542		153			-0.07153063939381354
LYMKNGQGF	9	Oxidation (M)	_LYM(Oxidation (M))KNGQGF_		LYM(1)KNGQGF		LYM(97)KNGQGF	0	0	1		nc|ENSG00000127314|P61224-4|RAP1B;ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A	nc|ENSG00000127314|P61224-4|RAP1B	nc|ENSG00000127314|P61224-4|RAP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.258056640625	2	537.257859	1072.50117	0.68814	0.00036971	-0.1814	-9.7459E-05	0.50674	0.00027225	537.2577817815602	29.329	0.56965	29.329	29.035	29.605	0					53	20	3	0	0	0	0.0055862	1	5261	5261		97.075	64.958	1	334140			28868	2726	16694	16695	35544	35544		343			-0.03218476325537267
LYMKNGQGF	9	Oxidation (M)	_LYM(Oxidation (M))KNGQGF_		LYM(1)KNGQGF		LYM(78)KNGQGF	0	0	1		nc|ENSG00000127314|P61224-4|RAP1B;ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A	nc|ENSG00000127314|P61224-4|RAP1B	nc|ENSG00000127314|P61224-4|RAP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2581787109375	2	537.257859	1072.50117	0.40758	0.00021898	0.090235	4.8479E-05	0.49782	0.00026746	537.2578491020722	29.31	0.72126	29.322	29.053	29.774	0.012266					55	24	3	0	0	0	0.025459	1	5243	5243		77.984	52.585	1	324920			28869	2726	16694	16695	35545	35545		343			-0.03218476325537267
LYMKNGQGF	9	Oxidation (M)	_LYM(Oxidation (M))KNGQGF_		LYM(1)KNGQGF		LYM(44)KNGQGF	0	0	1		nc|ENSG00000127314|P61224-4|RAP1B;ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A	nc|ENSG00000127314|P61224-4|RAP1B	nc|ENSG00000127314|P61224-4|RAP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.25830078125	2	537.257859	1072.50117	0.3246	0.00017439	0.14244	7.6525E-05	0.46703	0.00025092	537.2578693985704	29.328	0.68756	29.342	29.058	29.745	0.013474					57	23	3	0	0	0	0.12846	1	5243	5243		44.407	28.56	1	394870			28870	2726	16694	16695	35546	35546		343			-0.03218476325537267
LYMLRLFK	8	Unmodified	_LYMLRLFK_					0	0	0			REV__ENST00000368520.1_1_10:135345455-135368187:+|nuORF	REV__ENST00000368520.1_1_10:135345455-135368187:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.76953125	2	542.322805	1082.63106	0.72895	0.00039533	2.5473	0.0013814	3.2762	0.0017768	542.3241757317169	55.389	0.63728	55.459	55.14	55.777	0.070885					35	23	2	0	0	0	0.34185	1	13312	13312		10.183	3.8293	1	326450	+		28871	15469	16695	16696	35547	35547					0.09304744744235904
LYMLRLFK	8	Unmodified	_LYMLRLFK_					0	0	0			REV__ENST00000368520.1_1_10:135345455-135368187:+|nuORF	REV__ENST00000368520.1_1_10:135345455-135368187:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	542.322805	1082.63106	0.57871	0.00031385	3.0658	0.0016627	3.6445	0.0019765	542.3243017954793	55.518	0.59317	55.499	55.181	55.774	-0.019081	0.019566	0.00027306	NaN	10.183	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253360	+		28872	15469	16695	16696							0.09304744744235904
LYMPRIAF	8	Unmodified	_LYMPRIAF_					0	0	0			REV__ENST00000449943.5_1_11:64897669-64899838:-|nuORF	REV__ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2766418457031	2	505.778231	1009.54191	0.49261	0.00024915	-0.37041	-0.00018735	0.1222	6.1807E-05	505.7781119856854	66.369	0.86905	66.369	65.899	66.768	0					48	30	2	0	0	0	0.34147	1	16602	16602		6.3541	0	1	139830	+		28873	16970	16696	16697	35548	35548					0.037519097847280136
LYMPRIAF	8	Unmodified	_LYMPRIAF_					0	0	0			REV__ENST00000449943.5_1_11:64897669-64899838:-|nuORF	REV__ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.248046875	2	505.778231	1009.54191	0.54242	0.00027434	-0.74554	-0.00037708	-0.20312	-0.00010273	505.77791228488815	55.747	0.83762	55.728	55.349	56.187	-0.019081					49	30	2	0	0	0	0.32778	1	13312	13312		9.3474	3.587	1	273610	+		28874	16970	16696	16697	35549	35549					0.037519097847280136
LYMRFHIF	8	Unmodified	_LYMRFHIF_					0	0	0			REV__nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	REV__nc|ENSG00000143889|Q8WVV9-3|HNRNPLL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.26806640625	2	563.796955	1125.57936	0.10684	6.0234E-05	2.5708	0.0014494	2.6776	0.0015096	563.7981298056931	69.367	0.47359	69.367	69.174	69.647	0					27	16	2	0	0	0	0.33245	1	17504	17504		19.439	5.5329	1	131850	+		28875	23019	16697	16698	35550	35550					0.021590010503359736
LYNAFSQIF	9	Unmodified	_LYNAFSQIF_					0	0	0			REV__ENST00000460777.1_1_1:6609570-6610501:-|nuORF	REV__ENST00000460777.1_1_1:6609570-6610501:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8057861328125	2	551.782025	1101.5495	0.18294	0.00010094	2.061	0.0011372	2.244	0.0012382	552.2847091037254	65.086	0.65164	65.086	64.807	65.458	0					28	23	2	0	0	0	0.22061	1	16132	16132		24.021	1.2843	1	141160	+		28876	21208	16698	16699	35551	35551					0.0027834058598728006
LYNDHVVQF	9	Unmodified	_LYNDHVVQF_					0	0	0			REV__ENST00000520555.5_1_5:156607865-156638384:+|nuORF	REV__ENST00000520555.5_1_5:156607865-156638384:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2789306640625	2	567.782556	1133.55056	0.37943	0.00021543	-0.65005	-0.00036909	-0.27062	-0.00015365	567.7806110070269	70.944	0.68637	71.005	70.493	71.179	0.060783					38	24	2	0	0	0	0.22596	1	18028	18028		21.747	2.3076	1	383320	+		28877	14800	16699	16700	35552	35552					-0.01087445045095592
LYNGKRRIP	9	Unmodified	_LYNGKRRIP_					0	0	0			REV__ENSG00000158158|ENST00000377075|CNNM4	REV__ENSG00000158158|ENST00000377075|CNNM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.8001708984375	2	558.835457	1115.65636	0.34611	0.00019342	4.0542	0.0022657	4.4003	0.0024591	558.8382102233506	66.109	0.16919	66.096	65.945	66.115	-0.013588					7	5	2	0	0	0	0.25417	1	16498	16498		8.5933	0.68312	1	60996	+		28878	16804	16700	16701	35553	35553					0.10315935591029302
LYNHVKQLL	9	Unmodified	_LYNHVKQLL_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8114013671875	2	564.332216	1126.64988	-0.063617	-3.5901E-05	-0.92239	-0.00052054	-0.98601	-0.00055644	564.3317643406581	38.685	0.35559	38.685	38.46	38.816	0					19	12	2	0	0	0	0.17611	1	8072	8072		34.102	0	1	132180			28879	3167	16701	16702	35554	35554					0.09161997639648689
LYNHVKQLL	9	Unmodified	_LYNHVKQLL_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.8113403320312	2	564.332216	1126.64988	0.40234	0.00022705	-1.0615	-0.00059906	-0.6592	-0.00037201	564.3317601536429	38.609	0.34482	38.7	38.542	38.887	0.090881					17	12	2	0	0	0	0.082808	1	8051	8051		58.679	30.192	1	123900			28880	3167	16701	16702	35555	35555					0.09161997639648689
LYNHVKQLL	9	Unmodified	_LYNHVKQLL_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.8113403320312	2	564.332216	1126.64988	0.38938	0.00021974	-1.0255	-0.00057872	-0.63612	-0.00035898	564.3318454605868	38.603	0.45612	38.7	38.465	38.921	0.097527					22	16	2	0	0	0	0.17611	1	8059	8059		26.884	5.137	1	145500			28881	3167	16701	16702	35556	35556					0.09161997639648689
LYNLEQQYRF	10	Unmodified	_LYNLEQQYRF_					0	0	0			REV__nc|ENSG00000276203|Q5VUR7|ANKRD20A3P	REV__nc|ENSG00000276203|Q5VUR7|ANKRD20A3P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.5784912109375	3	458.56646	1372.67755	0.19897	9.124E-05	2.469	0.0011322	2.6679	0.0012234	458.567734832504	35.81	0.54523	35.81	35.547	36.093	0					24	19	2	0	0	0	0.31911	1	7140	7140		6.6304	0.0069188	1	211530	+		28882	23235	16702	16703	35557	35557					0.006118561092080199
LYNLIAQLE	9	Unmodified	_LYNLIAQLE_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7906494140625	2	538.802957	1075.59136	0.37254	0.00020072	-0.92954	-0.00050084	-0.557	-0.00030011	538.8023640972103	49.222	0.98735	49.254	48.743	49.73	0.032043					71	35	3	0	0	0	0.24913	1	11162	11162		12.532	0	1	1066500	+		28883	18836	16703	16704	35558	35558					0.05658896274508152
LYNLIAQLE	9	Unmodified	_LYNLIAQLE_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	538.802957	1075.59136	0.61356	0.00033059	-1.1726	-0.00063182	-0.55908	-0.00030123	538.802241299326	49.225	0.78873	49.225	48.912	49.701	0	-0.042935	-0.00028159	NaN	12.532	70	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1043500	+		28884	18836	16703	16704							0.05658896274508152
LYNLIAQLE	9	Unmodified	_LYNLIAQLE_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	538.802957	1075.59136	0.40085	0.00021598	-0.63531	-0.0003423	-0.23445	-0.00012632	538.8023910415257	49.28	0.81344	49.325	48.935	49.749	0.044891	0.057157	0.00029745	NaN	12.532	67	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1249600	+		28885	18836	16703	16704							0.05658896274508152
LYNLKENLQ	9	Unmodified	_LYNLKENLQ_					0	0	0		nc|ENSG00000131059|Q9BQP9-2|BPIFA3;ENSG00000131059|ENST00000375454|BPIFA3	nc|ENSG00000131059|Q9BQP9-2|BPIFA3	nc|ENSG00000131059|Q9BQP9-2|BPIFA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3641357421875	2	567.811313	1133.60807	0.39083	0.00022192	0.0082512	4.6851E-06	0.39908	0.0002266	567.8111814540407	40.991	0.36702	41.081	40.876	41.243	0.090252					21	13	2	0	0	0	0.22596	1	8812	8812		21.747	6.9084	1	261120			28886	3540	16704	16705	35559	35559					0.04661397160452907
LYNLLAKY	8	Unmodified	_LYNLLAKY_					0	0	0		ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2;nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;SLC47A2|p.F397Lfs*11|1|0.22|ENSG00000180638|chr17:19703103-19703103|A/-|frameshift_variant;nc|ENSG00000180638|Q86VL8-6|SLC47A2	ENSG00000180638|ENST00000433844|SLC47A2	ENSG00000180638|ENST00000433844|SLC47A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7738342285156	2	499.289485	996.564418	0.55016	0.00027469	-3.7949	-0.0018948	-3.2448	-0.0016201	499.2877039901298	78.92	0.22205	78.978	78.842	79.064	0.058151					13	9	2	0	0	0	0.34092	1	20397	20397		13.508	3.3245	1	68024			28887	7195	16705	16706	35560	35560					0.06599832453980525
LYNPDVRYSF	10	Unmodified	_LYNPDVRYSF_					0	0	0		nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9;ENST00000482490.5_1_3:64536549-64672246:-|nuORF;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;nc|ENSG00000163638|Q9P2N4-2|ADAMTS9;ENST00000475557.5_1_3:64600969-64673333:-|nuORF	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.8369140625	2	637.31422	1272.61389	0.44273	0.00028216	3.1673	0.0020186	3.6101	0.0023008	637.3141665425736	55.594	0.47681	55.594	55.431	55.907	0					36	16	3	0	0	0	0.26354	1	13338	13338		24.882	5.4426	1	414370			28888	5713	16706	16707	35561	35561					-0.011515043278677695
LYNPDVRYSF	10	Unmodified	_LYNPDVRYSF_					0	0	0		nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9;ENST00000482490.5_1_3:64536549-64672246:-|nuORF;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;nc|ENSG00000163638|Q9P2N4-2|ADAMTS9;ENST00000475557.5_1_3:64600969-64673333:-|nuORF	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.8363037109375	2	637.31422	1272.61389	0.77509	0.00049398	1.7076	0.0010882	2.4826	0.0015822	637.3139934292984	55.528	0.43198	55.599	55.422	55.854	0.070885					26	15	2	0	0	0	0.31396	1	13318	13318		18.721	4.3158	1	352670			28889	5713	16706	16707	35562	35562					-0.011515043278677695
LYNPDVRYSF	10	Unmodified	_LYNPDVRYSF_					0	0	0		nc|ENSG00000163638|Q9P2N4-4|ADAMTS9;ENSG00000163638|ENST00000498707|ADAMTS9;ENST00000482490.5_1_3:64536549-64672246:-|nuORF;nc|ENSG00000163638|Q9P2N4-1|ADAMTS9;nc|ENSG00000163638|Q9P2N4-2|ADAMTS9;ENST00000475557.5_1_3:64600969-64673333:-|nuORF	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	nc|ENSG00000163638|Q9P2N4-4|ADAMTS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.8367309570312	2	637.31422	1272.61389	0.83235	0.00053047	4.1611	0.0026519	4.9935	0.0031824	637.3142685305513	55.792	0.45778	55.773	55.484	55.942	-0.019077					34	16	3	0	0	0	0.017207	2	13321	13321;13381		74.772	49.372	1	529100			28890	5713	16706	16707	35563;35564	35563					-0.011515043278677695
LYNPWLQLA	9	Unmodified	_LYNPWLQLA_					0	0	0			REV__chr7:17375050-17450995|111|19.4|0.0|20.89|+|2|TE_info:MIRb,MIRb_dup90231,MIR,SINE,donor,+,17374885,17375050|None,LINC02888|1	REV__chr7:17375050-17450995|111|19.4|0.0|20.89|+|2|TE_info:MIRb,MIRb_dup90231,MIR,SINE,donor,+,17374885,17375050|None,LINC02888|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.281982421875	2	559.305667	1116.59678	0.4429	0.00024772	-0.91176	-0.00050995	-0.46886	-0.00026224	559.305439045764	74.557	0.42561	74.526	74.387	74.813	-0.030655					20	14	2	0	0	0	0.25066	1	19178	19178		11.64	1.5664	1	285440	+		28891	13217	16707	16708	35565	35565					0.04314619856995705
LYNPYWTAL	9	Unmodified	_LYNPYWTAL_					0	0	0		ENST00000560288.1_1_15:51040303-51057772:-|nuORF;ENSG00000138600|ENST00000261854|SPPL2A	ENST00000560288.1_1_15:51040303-51057772:-|nuORF	ENST00000560288.1_1_15:51040303-51057772:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7896728515625	2	570.78985	1139.56515	0.65441	0.00037353	-0.60447	-0.00034502	0.049938	2.8504E-05	570.7893367813799	78.233	0.75636	78.291	77.979	78.736	0.058151					70	27	3	0	0	0	0.19747	1	20194	20194		24.021	2.2739	1	514630			28892	4161	16708	16709	35566	35566					0.0009462710304433131
LYNQCWLFA	9	Unmodified	_LYNQCWLFA_					0	0	0			REV__ENST00000529689.5_1_11:82997014-82997215:-|nuORF	REV__ENST00000529689.5_1_11:82997014-82997215:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.2977294921875	2	579.276052	1156.53755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.847	1	88.847	88.347	89.347	0								0	0	0	0.25631	1	23486	23486		4.3292	0.38484	1		+		28893	21999	16709	16710	35567	35567					-0.03445599428846435
LYNRMLKRF	9	Unmodified	_LYNRMLKRF_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2243347167969	3	414.237621	1239.69103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.547	1	48.593	48.093	49.093	0.046764								0	0	0	0.23413	1	11116	11116		11.495	1.9507	1				28894	4833	16710	16711	35568	35568					0.08077435407471967
LYNRTMVQL	9	Oxidation (M)	_LYNRTM(Oxidation (M))VQL_		LYNRTM(1)VQL		LYNRTM(100)VQL	0	0	1		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.305419921875	2	577.305341	1152.59613	0.41825	0.00024146	0.12831	7.4075E-05	0.54656	0.00031553	577.3052861597869	40.39	0.8525	40.39	40.078	40.93	0					72	30	3	0	0	0	0.0031966	3	8646	8593;8646;8695		100.71	58.869	1	698280			28895	7428	16711	16712	35569;35570;35571	35570		822			0.025934571456446065
LYNRTMVQL	9	Oxidation (M)	_LYNRTM(Oxidation (M))VQL_		LYNRTM(1)VQL		LYNRTM(110)VQL	0	0	1		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3055419921875	2	577.305341	1152.59613	0.55381	0.00031972	-0.1007	-5.8133E-05	0.45312	0.00026159	577.3052269929544	40.185	0.83093	40.278	39.967	40.798	0.092674					74	29	3	0	0	0	0.0019382	3	8531	8531;8583;8636		110.79	52.114	1	875240			28896	7428	16711	16712	35572;35573;35574	35572		822			0.025934571456446065
LYNRTMVQL	9	Oxidation (M)	_LYNRTM(Oxidation (M))VQL_		LYNRTM(1)VQL		LYNRTM(100)VQL	0	0	1		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3057250976562	2	577.305341	1152.59613	0.38371	0.00022152	0.12053	6.9584E-05	0.50424	0.0002911	577.3053424060425	40.251	0.9135	40.351	39.922	40.835	0.099407					88	32	4	0	0	0	0.0031966	3	8551	8500;8551;8610		100.71	50.776	1	862480			28897	7428	16711	16712	35575;35576;35577	35576		822			0.025934571456446065
LYNWCLLV	8	Unmodified	_LYNWCLLV_					0	0	0		ENSG00000183862|ENST00000329903|CNGA2	ENSG00000183862|ENST00000329903|CNGA2	ENSG00000183862|ENST00000329903|CNGA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.28955078125	2	512.270238	1022.52592	0.29196	0.00014956	1.7951	0.00091956	2.087	0.0010691	512.7720399976188	68.644	0.13543	68.624	68.516	68.652	-0.019157					8	4	2	0	0	0	0.34147	1	17268	17268		11.114	0.93107	1	85111			28898	7416	16712	16713	35578	35578					0.01556203547829682
LYPDDYVH	8	Unmodified	_LYPDDYVH_					0	0	0		ENSG00000197859|ENST00000651351|ADAMTSL2	ENSG00000197859|ENST00000651351|ADAMTSL2	ENSG00000197859|ENST00000651351|ADAMTSL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.7543640136719	2	511.234907	1020.45526	-0.1251	-6.3953E-05	-0.76367	-0.00039041	-0.88876	-0.00045437	511.23488151320515	13.745	0.25189	13.679	13.55	13.802	-0.066068					13	8	2	0	0	0	0.344	1	495	495		0.69038	0	1	40938			28899	8005	16713	16714	35579	35579					-0.05414798236142815
LYPDDYVH	8	Unmodified	_LYPDDYVH_					0	0	0		ENSG00000197859|ENST00000651351|ADAMTSL2	ENSG00000197859|ENST00000651351|ADAMTSL2	ENSG00000197859|ENST00000651351|ADAMTSL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	511.234907	1020.45526	-0.0079138	-4.0458E-06	-0.74012	-0.00037838	-0.74804	-0.00038242	511.23401967002906	13.647	0.28503	13.647	13.537	13.822	0	-0.0047506	0.00019941	NaN	0.69038	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43098			28900	8005	16713	16714							-0.05414798236142815
LYPDDYVH	8	Unmodified	_LYPDDYVH_					0	0	0		ENSG00000197859|ENST00000651351|ADAMTSL2	ENSG00000197859|ENST00000651351|ADAMTSL2	ENSG00000197859|ENST00000651351|ADAMTSL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	511.234907	1020.45526	-0.11024	-5.6358E-05	-2.5567	-0.0013071	-2.667	-0.0013634	511.2329997638943	13.734	0.35779	13.629	13.487	13.845	-0.10466	-0.022887	-0.001658	NaN	0.69038	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29462			28901	8005	16713	16714							-0.05414798236142815
LYPDHFHLL	9	Unmodified	_LYPDHFHLL_					0	0	0		ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF;ENSG00000011485|ENST00000012443|PPP5C	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.803466796875	2	577.803291	1153.59203	0.55299	0.00031952	-0.054793	-3.166E-05	0.4982	0.00028786	577.803280072542	55.749	0.58878	55.749	55.46	56.049	0					59	20	4	0	0	0	0.013258	1	13319	13319		74.423	45.341	1	1641300			28902	445	16714	16715	35580	35580					0.021377357142227993
LYPDHFHLL	9	Unmodified	_LYPDHFHLL_					0	0	0		ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF;ENSG00000011485|ENST00000012443|PPP5C	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.8035888671875	2	577.803291	1153.59203	0.62462	0.00036091	-0.090932	-5.2541E-05	0.53369	0.00030837	577.8032169654341	55.635	0.57464	55.706	55.473	56.048	0.070885					53	20	3	0	0	0	0.013258	1	13288	13288		74.423	45.341	1	1642100			28903	445	16714	16715	35581	35581					0.021377357142227993
LYPDHFHLL	9	Unmodified	_LYPDHFHLL_					0	0	0		ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF;ENSG00000011485|ENST00000012443|PPP5C	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.8035888671875	2	577.803291	1153.59203	0.63976	0.00036966	-0.14685	-8.4851E-05	0.49291	0.00028481	577.8032215066022	55.854	0.67697	55.835	55.536	56.213	-0.019077					67	24	4	0	0	0	0.017871	1	13337	13337		67.344	44.195	1	1613100			28904	445	16714	16715	35582	35582					0.021377357142227993
LYPDHFHLL	9	Unmodified	_LYPDHFHLL_					0	0	0		ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF;ENSG00000011485|ENST00000012443|PPP5C	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	ENST00000487483.6_1_19:46886892-46890886:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.806884765625	2	577.803291	1153.59203	0.5637	0.00032571	3.8639	0.0022326	4.4276	0.0025583	578.3060127415389	60.541	0.58839	60.532	60.249	60.838	-0.0094566					47	21	3	0	0	0	0.24542	1	14838	14838		14.582	1.0738	1	681230			28905	445	16714	16715	35583	35583					0.021377357142227993
LYPDSPPG	8	Unmodified	_LYPDSPPG_					0	0	0		ENSG00000166546|ENST00000536005|BEAN1;nc|ENSG00000166546|Q3B7T3-2|BEAN1;nc|ENSG00000166546|Q3B7T3-3|BEAN1	ENSG00000166546|ENST00000536005|BEAN1	ENSG00000166546|ENST00000536005|BEAN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.593994140625	2	423.205618	844.396684	-0.19226	-8.1364E-05	-0.63127	-0.00026716	-0.82352	-0.00034852	423.20524467126194	25.563	0.68257	25.563	25.359	26.042	0					38	23	3	0	0	0	0.34185	1	4133	4133		10.183	4.423	1	110250			28906	6093	16715	16716	35584	35584					-0.031738548106091
LYPDSPPG	8	Unmodified	_LYPDSPPG_					0	0	0		ENSG00000166546|ENST00000536005|BEAN1;nc|ENSG00000166546|Q3B7T3-2|BEAN1;nc|ENSG00000166546|Q3B7T3-3|BEAN1	ENSG00000166546|ENST00000536005|BEAN1	ENSG00000166546|ENST00000536005|BEAN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.5941467285156	2	423.205618	844.396684	-0.35194	-0.00014894	-0.11363	-4.8089E-05	-0.46557	-0.00019703	423.20555131019927	25.626	0.36704	25.57	25.365	25.732	-0.055931					29	12	3	0	0	0	0.34185	1	4103	4103		10.183	0	1	107230			28907	6093	16715	16716	35585	35585					-0.031738548106091
LYPDSPPG	8	Unmodified	_LYPDSPPG_					0	0	0		ENSG00000166546|ENST00000536005|BEAN1;nc|ENSG00000166546|Q3B7T3-2|BEAN1;nc|ENSG00000166546|Q3B7T3-3|BEAN1	ENSG00000166546|ENST00000536005|BEAN1	ENSG00000166546|ENST00000536005|BEAN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.5940246582031	2	423.205618	844.396684	-0.26275	-0.0001112	0.11175	4.7292E-05	-0.15101	-6.3907E-05	423.2055624058505	25.749	0.47944	25.726	25.388	25.867	-0.022236					31	16	3	0	0	0	0.34185	1	4144	4144		10.183	0	1	112640			28908	6093	16715	16716	35586	35586					-0.031738548106091
LYPEGLAQL	9	Unmodified	_LYPEGLAQL_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.27685546875	2	502.276575	1002.5386	0.38726	0.00019451	0.0078271	3.9314E-06	0.39509	0.00019844	502.27662851422303	68.547	2.996	68.547	68.074	71.07	0					298	109	5	0	0	0	0.0037772	7	17246	17197;17246;17295;17338;17382;17433;17534		96.111	40.754	1	17750000			28909	5423	16716	16717	35587;35588;35589;35590;35591;35592;35593	35588					0.03742938211712499
LYPEGLAQL	9	Unmodified	_LYPEGLAQL_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2768249511719	2	502.276575	1002.5386	0.29264	0.00014699	0.05002	2.5124E-05	0.34266	0.00017211	502.27664308894265	68.454	2.48	68.526	67.858	70.338	0.071938					276	89	5	0	0	0	0.010453	8	17219	17172;17219;17268;17308;17356;17400;17451;17500		78.728	34.87	1	19044000			28910	5423	16716	16717	35594;35595;35596;35597;35598;35599;35600;35601	35595					0.03742938211712499
LYPEGLAQL	9	Unmodified	_LYPEGLAQL_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2767333984375	2	502.276575	1002.5386	0.38739	0.00019458	-0.074439	-3.7389E-05	0.31295	0.00015719	502.2765792517482	68.595	2.5145	68.576	68.04	70.554	-0.01915					286	90	5	0	0	0	0.0013036	5	17245	17195;17245;17289;17332;17381		118.89	51.551	1	19184000			28911	5423	16716	16717	35602;35603;35604;35605;35606	35603					0.03742938211712499
LYPEIFEKF	9	Unmodified	_LYPEIFEKF_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B;ENST00000366438.3_1_2:24079281-24090752:-|nuORF;ATAD2B|p.H734Qfs*57|1|0.29|ENSG00000119778|chr2:23819809-23819812|TGAG/-|frameshift_variant	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.313232421875	2	593.313158	1184.61176	0.45921	0.00027246	-0.009196	-5.4561E-06	0.45002	0.000267	593.3131419731753	70.634	0.662	70.634	70.301	70.963	0					71	23	4	0	0	0	0.048871	1	17900	17900		53.317	27.049	1	1177500			28912	2907	16717	16718	35607	35607					0.026840669343073387
LYPEIFEKF	9	Unmodified	_LYPEIFEKF_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B;ENST00000366438.3_1_2:24079281-24090752:-|nuORF;ATAD2B|p.H734Qfs*57|1|0.29|ENSG00000119778|chr2:23819809-23819812|TGAG/-|frameshift_variant	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.3133544921875	2	593.313158	1184.61176	0.45832	0.00027193	-0.029679	-1.7609E-05	0.42864	0.00025432	593.3131803636626	70.607	0.66555	70.668	70.379	71.044	0.060783					70	23	4	0	0	0	0.053988	1	17892	17892		51.415	22.334	1	1297500			28913	2907	16717	16718	35608	35608					0.026840669343073387
LYPEIFEKF	9	Unmodified	_LYPEIFEKF_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B;ENST00000366438.3_1_2:24079281-24090752:-|nuORF;ATAD2B|p.H734Qfs*57|1|0.29|ENSG00000119778|chr2:23819809-23819812|TGAG/-|frameshift_variant	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.3136596679688	2	593.313158	1184.61176	0.47564	0.0002822	0.016763	9.9455E-06	0.4924	0.00029215	593.3131121565891	70.693	0.66943	70.668	70.407	71.077	-0.024872					44	23	2	0	0	0	0.048871	1	17909	17909		53.317	27.049	1	1261900			28914	2907	16717	16718	35609	35609					0.026840669343073387
LYPENKEF	8	Unmodified	_LYPENKEF_					0	0	0			REV__ENST00000487662.1_1_3:57643405-57651906:-|nuORF	REV__ENST00000487662.1_1_3:57643405-57651906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.275390625	2	520.258382	1038.50221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.776	1	97.77	97.27	98.27	-0.0068283								0	0	0	0.35985	1	26182	26182		10.183	0.80027	1		+		28915	17854	16718	16719	35610	35610					-0.015499386850024166
LYPEVFEKF	9	Unmodified	_LYPEVFEKF_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ATAD2|p.L665Cfs*24|1|0.08|ENSG00000156802|chr8:123347311-123347312|-/AATTCAGAACAAATAAAACA|frameshift_variant	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.306396484375	2	586.305332	1170.59611	0.4554	0.000267	0.70891	0.00041564	1.1643	0.00068264	586.3060057770447	65.578	0.74212	65.578	65.293	66.035	0					69	26	5	0	0	0	0.075068	1	16357	16357		57.249	33.229	1	824160			28916	5256	16719	16720	35611	35611					0.01763780417286398
LYPEVFEKF	9	Unmodified	_LYPEVFEKF_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ATAD2|p.L665Cfs*24|1|0.08|ENSG00000156802|chr8:123347311-123347312|-/AATTCAGAACAAATAAAACA|frameshift_variant	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3059692382812	2	586.305332	1170.59611	0.03525	2.0667E-05	0.92371	0.00054158	0.95896	0.00056224	586.3061797422316	65.458	0.78273	65.547	65.243	66.025	0.088882					61	28	3	0	0	0	0.038291	2	16308	16308;16362		57.249	37.81	1	799910			28917	5256	16719	16720	35612;35613	35612					0.01763780417286398
LYPEVFEKF	9	Unmodified	_LYPEVFEKF_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ATAD2|p.L665Cfs*24|1|0.08|ENSG00000156802|chr8:123347311-123347312|-/AATTCAGAACAAATAAAACA|frameshift_variant	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3060302734375	2	586.305332	1170.59611	0.43654	0.00025595	0.58787	0.00034467	1.0244	0.00060062	586.3060309704131	65.58	0.66477	65.569	65.227	65.892	-0.011337					59	23	3	0	0	0	0.038291	1	16355	16355		57.249	33.229	1	901350			28918	5256	16719	16720	35614	35614					0.01763780417286398
LYPFDWSIF	9	Unmodified	_LYPFDWSIF_					0	0	0		ENST00000429586.6_1_3:183911568-183911775:+|nuORF	ENST00000429586.6_1_3:183911568-183911775:+|nuORF	ENST00000429586.6_1_3:183911568-183911775:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.2927856445312	2	594.292225	1186.5699	0.70407	0.00041843	0.50628	0.00030088	1.2104	0.0007193	594.292661391861	54.138	0.69373	54.138	53.884	54.578	0					60	24	4	0	0	0	0.20344	1	12858	12858		23.148	1.4018	1	1118200			28919	10452	16720	16721	35615	35615					-0.015924887542041688
LYPFPLALF	9	Unmodified	_LYPFPLALF_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.0009155273438	2	540.810054	1079.60555	0.073945	3.999E-05	0.56967	0.00030808	0.64362	0.00034807	540.8100366767341	106.3	0.091316	106.3	106.23	106.32	0					18	12	2	0	0	0	0.15605	1	28100	28100		36.466	21.884	1	157210			28920	6083	16721	16722	35616	35616					0.06893593493441585
LYPFPLALF	9	Unmodified	_LYPFPLALF_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.0011596679688	2	540.810054	1079.60555	0.26571	0.0001437	0.4775	0.00025824	0.74321	0.00040194	540.8102313692244	106.31	0.083939	106.31	106.25	106.33	-0.0060501					13	10	2	0	0	0	0.0089379	1	28111	28111		56.048	35.177	1	205470			28921	6083	16721	16722	35617	35617					0.06893593493441585
LYPFPLALF	9	Unmodified	_LYPFPLALF_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.0009765625	2	540.810054	1079.60555	0.49247	0.00026633	0.08357	4.5196E-05	0.57604	0.00031153	540.8100133169008	106.3	0.069511	106.31	106.26	106.33	0.0050507					14	9	2	0	0	0	0.076445	1	28146	28146		45.75	24.879	1	243040			28922	6083	16721	16722	35618	35618					0.06893593493441585
LYPFVPQSF	9	Unmodified	_LYPFVPQSF_					0	0	0			REV__TRIM5|p.R480Ffs*3|1|0.06|ENSG00000132256|chr11:5664854-5664855|-/TTTGAAC|frameshift_variant	REV__TRIM5|p.R480Ffs*3|1|0.06|ENSG00000132256|chr11:5664854-5664855|-/TTTGAAC|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2975463867188	2	549.286943	1096.55933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.638	1	74.638	74.138	75.138	0								0	0	0	0.20238	1	19136	19136		21.747	1.293	1		+		28923	15555	16722	16723	35619	35619					0.014915285913730258
LYPGSVYLL	9	Unmodified	_LYPGSVYLL_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;nc|ENSG00000204427|O95870-2|ABHD16A;ENSG00000204427|ENST00000395952|ABHD16A	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7901000976562	2	512.789318	1023.56408	0.71974	0.00036908	0.60849	0.00031203	1.3282	0.0006811	512.7895469227038	78.338	0.97419	78.338	77.955	78.929	0					89	36	3	0	0	0	0.029841	1	20206	20206		60.39	9.5345	1	742020			28924	8226	16723	16724	35620	35620					0.05324412734148609
LYPGSVYLL	9	Unmodified	_LYPGSVYLL_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;nc|ENSG00000204427|O95870-2|ABHD16A;ENSG00000204427|ENST00000395952|ABHD16A	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7897338867188	2	512.789318	1023.56408	0.546	0.00027998	0.87506	0.00044872	1.4211	0.0007287	512.7896558625861	78.246	1.195	78.304	77.844	79.039	0.058151					95	45	3	0	0	0	0.010938	1	20210	20210		77.984	17.595	1	672680			28925	8226	16723	16724	35621	35621					0.05324412734148609
LYPGSVYLL	9	Unmodified	_LYPGSVYLL_					0	0	0		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;nc|ENSG00000204427|O95870-2|ABHD16A;ENSG00000204427|ENST00000395952|ABHD16A	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.789794921875	2	512.789318	1023.56408	0.69813	0.00035799	0.53867	0.00027622	1.2368	0.00063421	512.7894987776741	78.36	1.0353	78.329	77.898	78.933	-0.030434					96	39	3	0	0	0	0.013258	1	20214	20214		74.423	14.033	1	807750			28926	8226	16723	16724	35622	35622					0.05324412734148609
LYPGTTYSF	9	Unmodified	_LYPGTTYSF_					0	0	0		PTPRT|p.V1257Efs*16|1|0.18|ENSG00000196090|chr20:42098484-42098497|CCAGAAGTCTGCCA/-|frameshift_variant;ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT;nc|ENSG00000173482|P28827|PTPRM;ENSG00000173482|ENST00000580170|PTPRM	PTPRT|p.V1257Efs*16|1|0.18|ENSG00000196090|chr20:42098484-42098497|CCAGAAGTCTGCCA/-|frameshift_variant	PTPRT|p.V1257Efs*16|1|0.18|ENSG00000196090|chr20:42098484-42098497|CCAGAAGTCTGCCA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2792358398438	2	524.752933	1047.49131	0.54735	0.00028722	-0.45075	-0.00023653	0.096599	5.0691E-05	524.7525069027753	62.774	0.85605	62.774	62.369	63.225	0					54	31	2	0	0	0	0.065123	1	15532	15532		64.236	26.262	1	251790			28927	7821	16724	16725	35623	35623					-0.030533410592852306
LYPGTTYSF	9	Unmodified	_LYPGTTYSF_					0	0	0		PTPRT|p.V1257Efs*16|1|0.18|ENSG00000196090|chr20:42098484-42098497|CCAGAAGTCTGCCA/-|frameshift_variant;ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT;nc|ENSG00000173482|P28827|PTPRM;ENSG00000173482|ENST00000580170|PTPRM	PTPRT|p.V1257Efs*16|1|0.18|ENSG00000196090|chr20:42098484-42098497|CCAGAAGTCTGCCA/-|frameshift_variant	PTPRT|p.V1257Efs*16|1|0.18|ENSG00000196090|chr20:42098484-42098497|CCAGAAGTCTGCCA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2794189453125	2	524.752933	1047.49131	0.54344	0.00028517	-0.7864	-0.00041266	-0.24295	-0.00012749	524.752320949719	62.63	0.79277	62.727	62.357	63.149	0.096985					48	28	2	0	0	0	0.090484	1	15514	15514		54.774	18.729	1	297060			28928	7821	16724	16725	35624	35624					-0.030533410592852306
LYPGTTYSF	9	Unmodified	_LYPGTTYSF_					0	0	0		PTPRT|p.V1257Efs*16|1|0.18|ENSG00000196090|chr20:42098484-42098497|CCAGAAGTCTGCCA/-|frameshift_variant;ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT;nc|ENSG00000173482|P28827|PTPRM;ENSG00000173482|ENST00000580170|PTPRM	PTPRT|p.V1257Efs*16|1|0.18|ENSG00000196090|chr20:42098484-42098497|CCAGAAGTCTGCCA/-|frameshift_variant	PTPRT|p.V1257Efs*16|1|0.18|ENSG00000196090|chr20:42098484-42098497|CCAGAAGTCTGCCA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.279541015625	2	524.752933	1047.49131	0.48214	0.000253	-0.81875	-0.00042964	-0.33661	-0.00017664	524.7523855429148	62.759	0.69473	62.75	62.441	63.136	-0.0085564					45	25	2	0	0	0	0.018829	1	15497	15497		81.613	35.592	1	269830			28929	7821	16724	16725	35625	35625					-0.030533410592852306
LYPHIDKQYL	10	Unmodified	_LYPHIDKQYL_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.8035888671875	2	645.348063	1288.68157	0.7017	0.00045284	-0.42625	-0.00027508	0.27545	0.00017776	645.3474860116928	47.333	0.52151	47.333	47.112	47.634	0					28	18	2	0	0	0	0.30555	1	10731	10731		20.415	5.1661	1	321860			28930	8721	16725	16726	35626	35626					0.04877945602947875
LYPHIDKQYL	10	Unmodified	_LYPHIDKQYL_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.8035888671875	2	645.348063	1288.68157	0.3807	0.00024568	-0.46741	-0.00030164	-0.086714	-5.5961E-05	645.3476151860565	47.227	0.45313	47.279	47.062	47.515	0.052574					31	16	3	0	0	0	0.31323	1	10709	10709		15.248	5.1746	1	347260			28931	8721	16725	16726	35627	35627					0.04877945602947875
LYPHIDKQYL	10	Unmodified	_LYPHIDKQYL_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	644.8035278320312	2	645.348063	1288.68157	1.0218	0.00065943	-0.65135	-0.00042035	0.37047	0.00023908	645.8492600380944	47.259	0.39945	47.313	47.142	47.541	0.054375					31	14	3	0	0	0	0.31323	1	10688	10688		15.248	2.206	1	432480			28932	8721	16725	16726	35628	35628					0.04877945602947875
LYPHLYSR	8	Unmodified	_LYPHLYSR_					0	0	0		ENST00000413731.1_1_17:16649540-16650074:-|nuORF;ENST00000493727.5_1_13:115047468-115051873:+|nuORF;ENST00000480362.5_1_13:115047204-115067220:+|nuORF;nc|ENSG00000169062|Q9H1J1-2|UPF3A;ENSG00000169062|ENST00000375299|UPF3A	ENST00000413731.1_1_17:16649540-16650074:-|nuORF	ENST00000413731.1_1_17:16649540-16650074:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7821655273438	2	524.782359	1047.55016	0.59393	0.00031169	-0.49875	-0.00026174	0.095183	4.995E-05	524.7819997177016	20.542	0.6898	20.542	20.31	21	0					57	23	3	0	0	0	0.45169	1	2574	2574		5.2307	1.6342	1	134450			28933	10293	16726	16727	35629	35629					0.028291800257193245
LYPHVVGF	8	Unmodified	_LYPHVVGF_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.8000793457031	2	466.255446	930.496338	0.71397	0.00033289	-0.90369	-0.00042135	-0.18971	-8.8455E-05	466.2548911467258	56.15	0.60298	56.131	55.723	56.326	-0.019081					31	21	3	0	0	0	0.29242	1	13421	13421		32.454	15.367	1	462230			28934	6848	16727	16728	35630	35630					0.02831007593999857
LYPHVVGF	8	Unmodified	_LYPHVVGF_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	466.255446	930.496338	0.41041	0.00019135	-0.86568	-0.00040363	-0.45528	-0.00021228	466.2549805484941	55.9	0.48473	55.971	55.592	56.077	0.070885	-0.079844	1.5075E-05	NaN	32.454	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	515150			28935	6848	16727	16728							0.02831007593999857
LYPHVVGFL	9	Unmodified	_LYPHVVGFL_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.24609375	2	522.797478	1043.5804	0.43447	0.00022714	0.14456	7.5575E-05	0.57903	0.00030271	522.798085518124	67.062	0.39347	67.062	66.856	67.25	0					27	13	3	0	0	0	0.22431	1	16842	16842		20.871	0	1	198600			28936	6848	16728	16729	35631	35631					0.0603553869091229
LYPHVVGFL	9	Unmodified	_LYPHVVGFL_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2460327148438	2	522.797478	1043.5804	0.38504	0.0002013	-0.15868	-8.2955E-05	0.22636	0.00011834	522.7979439050515	66.947	0.50719	67.031	66.795	67.302	0.083832					34	17	3	0	0	0	0.19319	1	16780	16780		20.871	6.2895	1	239370			28937	6848	16728	16729	35632	35632					0.0603553869091229
LYPHVVGFL	9	Unmodified	_LYPHVVGFL_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2461547851562	2	522.797478	1043.5804	0.24558	0.00012839	0.10208	5.3369E-05	0.34766	0.00018176	522.7981070426046	67.073	0.45609	67.057	66.867	67.323	-0.016296					34	15	3	0	0	0	0.22431	1	16798	16798		20.871	0	1	250840			28938	6848	16728	16729	35633	35633					0.0603553869091229
LYPIISLLF	9	Unmodified	_LYPIISLLF_					0	0	0		ENST00000483698.5_1_2:122513280-122515022:+|nuORF	ENST00000483698.5_1_2:122513280-122515022:+|nuORF	ENST00000483698.5_1_2:122513280-122515022:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8150024414062	2	539.830986	1077.64742	0.6996	0.00037767	1.9014	0.0010264	2.601	0.0014041	539.8324598518252	84.86	2.1187	84.86	84.186	86.305	0					187	80	4	0	0	0	0.29662	1	22529	22529		9.3474	4.1168	1	1269400			28939	11063	16729	16730	35634	35634					0.1117014918197583
LYPKQRAKGG	10	Unmodified	_LYPKQRAKGG_					0	0	0			REV__ENSG00000083814|ENST00000317398|ZNF671	REV__ENSG00000083814|ENST00000317398|ZNF671	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.3275146484375	2	559.327465	1116.64038	0.29412	0.00016451	-0.2184	-0.00012216	0.075722	4.2353E-05	559.3274220742873	21.422	0.68231	21.372	21.092	21.774	-0.049377					62	23	3	0	0	0	0.3641	1	2864	2864		10.074	0.6908	1	332070	+		28940	13939	16730	16731	35635	35635					0.08672229354124283
LYPKTLFLL	9	Unmodified	_LYPKTLFLL_					0	0	0		nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3441772460938	2	554.344261	1106.67397	0.22498	0.00012472	-0.15718	-8.7131E-05	0.067802	3.7586E-05	554.3440940431414	75.429	1.2351	75.429	74.985	76.22	0					119	44	3	0	0	0	0.10059	3	19345	19345;19394;19446		38.176	9.6887	1	1269800			28941	4199	16731	16732	35636;35637;35638	35636					0.12489838073338433
LYPKTLFLL	9	Unmodified	_LYPKTLFLL_					0	0	0		nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3440551757812	2	554.344261	1106.67397	0.35226	0.00019527	-0.31359	-0.00017384	0.038671	2.1437E-05	554.3439938271946	75.324	1.6942	75.376	74.998	76.692	0.052361					139	61	4	0	0	0	0.07944	3	19362	19315;19362;19412		41.956	11.463	1	1357800			28942	4199	16731	16732	35639;35640;35641	35640					0.12489838073338433
LYPKTLFLL	9	Unmodified	_LYPKTLFLL_					0	0	0		nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000138814|Q08209-5|PPP3CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3442993164062	2	554.344261	1106.67397	0.40366	0.00022376	-0.31015	-0.00017193	0.093511	5.1837E-05	554.3439732775435	75.45	1.158	75.419	75.031	76.189	-0.031487					120	42	4	0	0	0	0.079752	3	19339	19339;19387;19439		41.84	5.9149	1	1280500			28943	4199	16731	16732	35642;35643;35644	35642					0.12489838073338433
LYPLSHVLF	9	Unmodified	_LYPLSHVLF_					0	0	0		PRSS55|p.C340Y|1|0.12|ENSG00000184647|chr8:10538753-10538753|G/A|missense_variant	PRSS55|p.C340Y|1|0.12|ENSG00000184647|chr8:10538753-10538753|G/A|missense_variant	PRSS55|p.C340Y|1|0.12|ENSG00000184647|chr8:10538753-10538753|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.8109741210938	2	544.810585	1087.60662	0.54155	0.00029504	0.090036	4.9052E-05	0.63158	0.00034409	544.8105573297725	72.965	1.0976	72.965	72.506	73.604	0					105	39	4	0	0	0	0.06608	1	18676	18676		46.921	10.877	1	730530			28944	13054	16732	16733	35645	35645					0.06631807862368078
LYPLSHVLF	9	Unmodified	_LYPLSHVLF_					0	0	0		PRSS55|p.C340Y|1|0.12|ENSG00000184647|chr8:10538753-10538753|G/A|missense_variant	PRSS55|p.C340Y|1|0.12|ENSG00000184647|chr8:10538753-10538753|G/A|missense_variant	PRSS55|p.C340Y|1|0.12|ENSG00000184647|chr8:10538753-10538753|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.8109741210938	2	544.810585	1087.60662	0.73635	0.00040117	-0.077206	-4.2063E-05	0.65914	0.00035911	544.8104186409602	72.992	1.0417	72.963	72.516	73.557	-0.029305					95	37	3	0	0	0	0.23775	1	18706	18706		18.135	4.6271	1	725320			28945	13054	16732	16733	35646	35646					0.06631807862368078
LYPLTNYTF	9	Unmodified	_LYPLTNYTF_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.2903442382812	2	566.289682	1130.56481	0.50556	0.00028629	0.33401	0.00018915	0.83957	0.00047544	566.2901012189924	77.255	2.3314	77.255	76.833	79.164	0					219	89	4	0	0	0	3.0823E-17	4	19915	19915;19962;20010;20053		223.06	102.61	1	13349000			28946	6141	16733	16734	35647;35648;35649;35650	35647					0.00475207383169618
LYPLTNYTF	9	Unmodified	_LYPLTNYTF_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.290283203125	2	566.289682	1130.56481	0.58085	0.00032893	0.18076	0.00010236	0.76161	0.00043129	566.2900893687025	77.276	1.3883	77.331	76.862	78.251	0.055412					174	49	4	0	0	0	3.0823E-17	4	19890	19890;19941;19990;20031		223.06	102.61	1	12839000			28947	6141	16733	16734	35651;35652;35653;35654	35651					0.00475207383169618
LYPLTNYTF	9	Unmodified	_LYPLTNYTF_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.2907104492188	2	566.289682	1130.56481	0.63991	0.00036238	0.18904	0.00010705	0.82895	0.00046943	566.2900727963149	77.303	1.3173	77.272	76.852	78.169	-0.031334					163	47	4	0	0	0	3.0823E-17	4	19960	19912;19960;20010;20052		223.06	102.61	1	13955000			28948	6141	16733	16734	35655;35656;35657;35658	35656					0.00475207383169618
LYPLTNYTF	9	Unmodified	_LYPLTNYTF_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.8159790039062	2	566.289682	1130.56481	0.4735	0.00026814	-1.2024	-0.0006809	-0.7289	-0.00041277	566.2892808467336	84.678	0.50416	84.665	84.385	84.889	-0.01284					27	19	2	0	0	0	0.22674	1	22218	22218		22.736	7.898	1	117210			28949	6141	16733	16734	35659	35659					0.00475207383169618
LYPNKVHVF	9	Unmodified	_LYPNKVHVF_					0	0	0			REV__ENSG00000007001|ENST00000005756|UPP2	REV__ENSG00000007001|ENST00000005756|UPP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.8133544921875	2	558.813659	1115.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.979	1	66.966	66.466	67.466	-0.013588								0	0	0	0.22789	1	16782	16782		13.508	0	1		+		28950	13377	16734	16735	35660	35660					0.05958326093877986
LYPPRQPTF	9	Unmodified	_LYPPRQPTF_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8036499023438	2	559.803291	1117.59203	0.63474	0.00035533	0.17218	9.6385E-05	0.80692	0.00045172	559.8034293471682	45.824	0.82841	45.824	45.366	46.194	0					75	29	3	0	0	0	0.11461	1	10257	10257		36.127	3.3413	1	1550700			28951	1332	16735	16736	35661	35661					0.03793735714225477
LYPPRQPTF	9	Unmodified	_LYPPRQPTF_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.8037719726562	2	559.803291	1117.59203	0.45865	0.00025675	0.59065	0.00033065	1.0493	0.0005874	559.8036693110611	45.588	0.92737	45.648	45.223	46.15	0.059837					80	32	4	0	0	0	0.088443	1	10166	10166		39.95	7.164	1	1799800			28952	1332	16735	16736	35662	35662					0.03793735714225477
LYPPRQPTF	9	Unmodified	_LYPPRQPTF_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	559.803291	1117.59203	0.63474	0.00035533	0.17218	9.6385E-05	0.80692	0.00045172	559.8034293471682	45.824	0.82841	45.824	45.366	46.194	0	0.12085	-0.00033883	NaN	39.95	75	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1550700			28953	1332	16735	16736							0.03793735714225477
LYPPVQRSI	9	Unmodified	_LYPPVQRSI_					0	0	0		nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF	nc|ENSG00000143442|Q7Z3K3-2|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.829345703125	2	536.811116	1071.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.97	1	57.952	57.452	58.452	-0.0172								0	0	0	0.19534	1	14019	14019		24.021	0.87215	1				28954	4516	16736	16737	35663	35663					0.07474022231281197
LYPQFMFHL	9	Oxidation (M)	_LYPQFM(Oxidation (M))FHL_		LYPQFM(1)FHL		LYPQFM(130)FHL	0	0	1		ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3002319335938	2	606.299527	1210.5845	0.54151	0.00032832	-0.31627	-0.00019175	0.22524	0.00013656	606.2997994395098	72.901	1.9735	72.901	72.4	74.374	0					210	69	6	0	0	0	0.00033206	6	18639	18554;18597;18639;18683;18728;18776		131.3	131.3	1	21090000			28955	1682	16737	16738	35664;35665;35666;35667;35668;35669	35666		209			-0.012367398777087146
LYPQFMFHL	9	Oxidation (M)	_LYPQFM(Oxidation (M))FHL_		LYPQFM(1)FHL		LYPQFM(120)FHL	0	0	1		ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3002319335938	2	606.299527	1210.5845	0.48187	0.00029216	-0.33559	-0.00020347	0.14628	8.8687E-05	606.29987409134	72.862	3.4066	72.916	72.51	75.916	0.053841					262	122	6	0	0	0	0.0014051	6	18619	18531;18578;18619;18661;18712;18762		117.6	104.8	1	22668000			28956	1682	16737	16738	35670;35671;35672;35673;35674;35675	35672		209			-0.012367398777087146
LYPQFMFHL	9	Oxidation (M)	_LYPQFM(Oxidation (M))FHL_		LYPQFM(1)FHL		LYPQFM(130)FHL	0	0	1		ENSG00000101310|ENST00000650089|SEC23B;nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3002319335938	2	606.299527	1210.5845	0.46249	0.00028041	-0.33324	-0.00020204	0.12925	7.8365E-05	606.2999639600353	72.955	2.1895	72.925	72.455	74.644	-0.029305					235	78	6	0	0	0	0.00033206	6	18649	18560;18606;18649;18691;18734;18784		131.3	117.6	1	24793000			28957	1682	16737	16738	35676;35677;35678;35679;35680;35681	35678		209			-0.012367398777087146
LYPRAIQLCSL	11	Unmodified	_LYPRAIQLCSL_					0	0	0		ENST00000302392.4_1_3:44906723-44906972:+|nuORF	ENST00000302392.4_1_3:44906723-44906972:+|nuORF	ENST00000302392.4_1_3:44906723-44906972:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.5630187988281	3	426.240919	1275.70093	0.024225	1.0326E-05	-0.56567	-0.00024111	-0.54145	-0.00023079	426.2407474752966	35.759	0.44178	35.845	35.671	36.113	0.08625					18	15	2	0	0	0	0.33094	1	7159	7159		2.6312	0.88896	1	123170			28958	9235	16738	16739	35682	35682					0.07410578622216235
LYPRLYPEL	9	Unmodified	_LYPRLYPEL_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3273315429688	2	582.326599	1162.63865	0.31483	0.00018334	-0.36229	-0.00021097	-0.047456	-2.7635E-05	582.3261843601183	62.881	0.58804	62.881	62.58	63.168	0					54	21	3	0	0	0	0.04299	2	15533	15533;15591		55.503	28.619	1	727400			28959	4062	16739	16740	35683;35684	35683					0.06383175545511222
LYPRLYPEL	9	Unmodified	_LYPRLYPEL_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.32666015625	2	582.326599	1162.63865	0.35216	0.00020507	-0.41586	-0.00024217	-0.063702	-3.7095E-05	582.3261163060391	62.733	0.55155	62.829	62.57	63.122	0.095726					53	19	4	0	0	0	0.063853	1	15521	15521		47.749	28.492	1	680860			28960	4062	16739	16740	35685	35685					0.06383175545511222
LYPRLYPEL	9	Unmodified	_LYPRLYPEL_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.32666015625	2	582.326599	1162.63865	0.26931	0.00015683	-0.30773	-0.0001792	-0.038422	-2.2374E-05	582.3262965569502	62.903	0.75343	62.894	62.514	63.268	-0.0085526					62	27	3	0	0	0	0.088443	1	15513	15513		39.95	26.907	1	780600			28961	4062	16739	16740	35686	35686					0.06383175545511222
LYPSIIQEF	9	Unmodified	_LYPSIIQEF_					0	0	0		ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1	ENSG00000101868|ENST00000379068|POLA1	ENSG00000101868|ENST00000379068|POLA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2506713867188	2	555.297507	1108.58046	0.3039	0.00016875	-0.66487	-0.0003692	-0.36097	-0.00020045	555.2972283858301	82.118	0.59349	82.094	81.599	82.193	-0.02404					29	23	2	0	0	0	0.24471	1	21351	21351		17.113	7.7655	1	253690			28962	1725	16740	16741	35687	35687					0.030514939002614483
LYPSTFVQQW	10	Unmodified	_LYPSTFVQQW_					0	0	0			REV__nc|ENSG00000136636|Q9Y597-2|KCTD3	REV__nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.817138671875	2	634.819138	1267.62372	-0.36092	-0.00022912	-2.866	-0.0018194	-3.227	-0.0020485	634.817270170897	35.254	0.43939	35.254	35	35.439	0					23	15	2	0	0	0	0.34325	1	7049	7049		13.906	5.1606	1	244860	+		28963	15819	16741	16742	35688	35688					0.0006168367751797632
LYPSTLFLL	9	Unmodified	_LYPSTLFLL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.812744140625	2	533.812793	1065.61103	0.3073	0.00016404	0.16827	8.9823E-05	0.47556	0.00025386	533.8126701112894	94.831	1.0631	94.831	94.392	95.455	0					222	96	3	0	0	0	0.0061338	4	25288	25248;25288;25325;25362		85.357	31.781	1	650340			28964	2144	16742	16743	35689;35690;35691;35692	35690					0.08085272285279643
LYPSTLFLL	9	Unmodified	_LYPSTLFLL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.8129272460938	2	533.812793	1065.61103	0.24979	0.00013334	0.22497	0.00012009	0.47476	0.00025343	533.8127349703648	94.755	0.91897	94.838	94.427	95.346	0.082779					216	81	4	0	0	0	0.0014051	4	25280	25239;25280;25320;25361		117.6	46.883	1	1209900			28965	2144	16742	16743	35693;35694;35695;35696	35694					0.08085272285279643
LYPSTLFLL	9	Unmodified	_LYPSTLFLL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.8128662109375	2	533.812793	1065.61103	0.54828	0.00029268	0.0086699	4.6281E-06	0.55695	0.00029731	533.8125778288348	94.829	1.175	94.827	94.466	95.641	-0.0020065					269	110	4	0	0	0	0.00033206	5	25296	25257;25296;25335;25376;25413		131.3	56.875	1	1040600			28966	2144	16742	16743	35697;35698;35699;35700;35701	35698					0.08085272285279643
LYPVIPKDF	9	Unmodified	_LYPVIPKDF_					0	0	0		ENST00000450418.1_1_3:4024502-4025426:-|nuORF	ENST00000450418.1_1_3:4024502-4025426:-|nuORF	ENST00000450418.1_1_3:4024502-4025426:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2926025390625	2	546.310418	1090.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.822	1	61.822	61.322	62.322	0								0	0	0	0.22065	1	15215	15215		15.847	3.3156	1				28967	10639	16743	16744	35702	35702					0.06460388142522788
LYQAENVLSL	10	Unmodified	_LYQAENVLSL_					0	0	0			REV__ENSG00000075643|ENST00000261326|MOCOS	REV__ENSG00000075643|ENST00000261326|MOCOS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7745361328125	2	575.311146	1148.60774	0.72882	0.0004193	-0.52461	-0.00030182	0.20421	0.00011748	575.8122905199796	55.863	0.51157	55.933	55.565	56.077	0.070885					22	18	2	0	0	0	0.31691	1	13273	13273		9.3831	1.473	1	479330	+		28968	13816	16744	16745	35703	35703					0.039379774406370416
LYQAENVLSL	10	Unmodified	_LYQAENVLSL_					0	0	0			REV__ENSG00000075643|ENST00000261326|MOCOS	REV__ENSG00000075643|ENST00000261326|MOCOS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	575.311146	1148.60774	0.78879	0.0004538	-0.29385	-0.00016905	0.49494	0.00028474	575.3109669879311	56.139	0.29749	56.12	55.942	56.239	-0.019081	0.093271	0.00018763	NaN	9.3831	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326310	+		28969	13816	16744	16745							0.039379774406370416
LYQAIAVV	8	Unmodified	_LYQAIAVV_					0	0	0		ENSG00000133138|ENST00000357242|TBC1D8B	ENSG00000133138|ENST00000357242|TBC1D8B	ENSG00000133138|ENST00000357242|TBC1D8B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.762939453125	2	438.763104	875.511654	0.12214	5.359E-05	-0.1187	-5.2083E-05	0.0034345	1.5069E-06	438.7629466855967	71.769	0.63733	71.769	71.521	72.158	0					46	22	3	0	0	0	0.2705	1	18256	18256		34.187	3.9625	1	429100			28970	3698	16745	16746	35704	35704					0.06891874391180863
LYQAIAVV	8	Unmodified	_LYQAIAVV_					0	0	0		ENSG00000133138|ENST00000357242|TBC1D8B	ENSG00000133138|ENST00000357242|TBC1D8B	ENSG00000133138|ENST00000357242|TBC1D8B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.7628479003906	2	438.763104	875.511654	0.17113	7.5085E-05	-0.24997	-0.00010968	-0.078846	-3.4595E-05	438.76290187810713	71.773	0.63324	71.746	71.537	72.171	-0.027275					43	22	3	0	0	0	0.20019	1	18262	18262		42.968	10.851	1	452850			28971	3698	16745	16746	35705	35705					0.06891874391180863
LYQAQALY	8	Unmodified	_LYQAQALY_					0	0	0		ENSG00000197557|ENST00000355689|TTC30A;ENSG00000196659|ENST00000408939|TTC30B	ENSG00000197557|ENST00000355689|TTC30A	ENSG00000197557|ENST00000355689|TTC30A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.26629638671875	2	485.255643	968.496732	0.40019	0.00019419	-1.8078	-0.00087726	-1.4076	-0.00068307	485.2546738266984	37.901	0.6445	37.901	37.532	38.177	0					43	22	2	0	0	0	0.28861	1	7800	7800		32.117	3.6301	1	355500			28972	7975	16746	16747	35706	35706					0.011223825231809315
LYQCDCGTFF	10	Unmodified	_LYQCDCGTFF_					0	0	0		ENSG00000179943|ENST00000221665|FIZ1	ENSG00000179943|ENST00000221665|FIZ1	ENSG00000179943|ENST00000221665|FIZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.7415161132812	2	598.741185	1195.46782	0.40517	0.00024259	-1.5914	-0.00095282	-1.1862	-0.00071022	598.7403779984006	52.879	0.79698	52.871	52.633	53.43	-0.007534					68	29	4	0	0	0	0.35231	1	12435	12435		12.241	0.60036	1	609280			28973	7159	16747	16748	35707	35707					-0.12209846159771587
LYQDGVFKF	9	Unmodified	_LYQDGVFKF_					0	0	0		ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF	ENSG00000166971|ENST00000394657|AKTIP	ENSG00000166971|ENST00000394657|AKTIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.790283203125	2	558.78985	1115.56515	0.12976	7.2506E-05	0.52499	0.00029336	0.65475	0.00036587	558.7901364077845	61.49	1.1646	61.49	61.128	62.292	0					133	43	4	0	0	0	6.549E-06	4	15085	15068;15085;15132;15174		155.95	78.674	1	18486000			28974	6136	16748	16749	35708;35709;35710;35711	35709					0.011986271030536955
LYQDGVFKF	9	Unmodified	_LYQDGVFKF_					0	0	0		ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF	ENSG00000166971|ENST00000394657|AKTIP	ENSG00000166971|ENST00000394657|AKTIP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	558.78985	1115.56515	0.00079555	4.4455E-07	0.72429	0.00040473	0.72509	0.00040517	558.7902405889972	61.365	1.1379	61.462	61.169	62.307	0.096985	-0.0043977	8.2065E-05	NaN	155.95	128	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20668000			28975	6136	16748	16749							0.011986271030536955
LYQDGVFKF	9	Unmodified	_LYQDGVFKF_					0	0	0		ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF	ENSG00000166971|ENST00000394657|AKTIP	ENSG00000166971|ENST00000394657|AKTIP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	558.78985	1115.56515	-0.014883	-8.3166E-06	0.71754	0.00040096	0.70266	0.00039264	558.7902396328685	61.457	1.2191	61.448	61.133	62.352	-0.0094566	-0.018601	7.4525E-05	NaN	155.95	105	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20475000			28976	6136	16748	16749							0.011986271030536955
LYQDKFPFF	9	Unmodified	_LYQDKFPFF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.8058471679688	2	602.8055	1203.59645	0.25232	0.0001521	0.89152	0.00053741	1.1438	0.00068951	602.8059976941477	73.637	0.84649	73.637	73.281	74.127	0					85	29	4	0	0	0	0.0013683	2	18861	18811;18861		118.07	67.213	1	1194000			28977	4558	16749	16750	35712;35713	35713					0.002792001371290098
LYQDKFPFF	9	Unmodified	_LYQDKFPFF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8058471679688	2	602.8055	1203.59645	0.40674	0.00024519	0.62103	0.00037436	1.0278	0.00061955	602.8057644073314	73.605	0.78183	73.658	73.308	74.09	0.052361					80	27	4	0	0	0	0.00045155	4	18845	18763;18803;18845;18910		129.77	78.917	1	1356000			28978	4558	16749	16750	35714;35715;35716;35717	35716					0.002792001371290098
LYQDKFPFF	9	Unmodified	_LYQDKFPFF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8056640625	2	602.8055	1203.59645	0.28815	0.0001737	0.95915	0.00057818	1.2473	0.00075188	602.8060587278253	73.716	1.0055	73.686	73.29	74.295	-0.030655					91	36	4	0	0	0	0.00045155	5	18918	18785;18794;18816;18863;18918		129.77	91.798	1	1707600			28979	4558	16749	16750	35718;35719;35720;35721;35722	35722					0.002792001371290098
LYQDQILEKF	10	Unmodified	_LYQDQILEKF_					0	0	0		ENST00000368657.7_1_6:112400794-112408637:-|nuORF;ENSG00000074935|ENST00000368662|TUBE1	ENST00000368657.7_1_6:112400794-112408637:-|nuORF	ENST00000368657.7_1_6:112400794-112408637:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	648.8452758789062	2	648.845353	1295.67615	0.30313	0.00019668	0.29676	0.00019255	0.59989	0.00038923	648.8448102429119	61.599	0.58175	61.599	61.363	61.945	0					46	21	3	0	0	0	0.0042491	1	15155	15155		96.034	32.807	1	695780			28980	1032	16750	16751	35723	35723					0.04014222020464331
LYQDQILEKF	10	Unmodified	_LYQDQILEKF_					0	0	0		ENST00000368657.7_1_6:112400794-112408637:-|nuORF;ENSG00000074935|ENST00000368662|TUBE1	ENST00000368657.7_1_6:112400794-112408637:-|nuORF	ENST00000368657.7_1_6:112400794-112408637:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	648.8452758789062	2	648.845353	1295.67615	-0.021124	-1.3706E-05	0.28881	0.00018739	0.26769	0.00017369	648.8449181547871	61.501	0.57013	61.598	61.408	61.978	0.096985					50	20	3	0	0	0	0.0094051	1	15142	15142		83.278	28.043	1	658380			28981	1032	16750	16751	35724	35724					0.04014222020464331
LYQDQILEKF	10	Unmodified	_LYQDQILEKF_					0	0	0		ENST00000368657.7_1_6:112400794-112408637:-|nuORF;ENSG00000074935|ENST00000368662|TUBE1	ENST00000368657.7_1_6:112400794-112408637:-|nuORF	ENST00000368657.7_1_6:112400794-112408637:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	648.3190307617188	2	648.845353	1295.67615	-0.021654	-1.405E-05	0.35277	0.00022889	0.33111	0.00021484	648.8447324598881	61.544	0.5012	61.535	61.376	61.878	-0.0094566					44	17	3	0	0	0	0.14455	1	15118	15118		79.427	29.9	1	597080			28982	1032	16750	16751	35725	35725					0.04014222020464331
LYQEIIHYF	9	Unmodified	_LYQEIIHYF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.3169555664062	2	613.316232	1224.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.29	1	69.29	68.79	69.79	0								0	0	0	1.2412E-10	1	17502	17502		142.08	96.38	1				28983	4924	16751	16752	35726	35726					0.014585851658466709
LYQENETKDH	10	Unmodified	_LYQENETKDH_					0	0	0			REV__nc|ENSG00000054282|Q86SQ7-4|SDCCAG8	REV__nc|ENSG00000054282|Q86SQ7-4|SDCCAG8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.1985168457031	3	426.198325	1275.57314	0.023398	9.972E-06	0.21401	9.1212E-05	0.23741	0.00010118	426.19850986372245	21.566	0.67342	21.465	21.244	21.917	-0.10034					76	23	5	0	0	0	0.35961	1	2870	2870		10.899	0.099449	1	380690	+		28984	13583	16752	16753	35727	35727					-0.053618904381210086
LYQERHFRKMM	11	Unmodified	_LYQERHFRKMM_					0	0	0			REV__ENST00000511141.1_1_4:153717542-153717788:-|nuORF	REV__ENST00000511141.1_1_4:153717542-153717788:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.9854736328125	3	513.595479	1537.76461	0.30073	0.00015445	0.90617	0.0004654	1.2069	0.00061986	513.5958101867341	94.882	0.80017	94.88	94.317	95.117	-0.0020142					89	69	2	0	0	0	0.33346	1	25291	25291		0.094841	0	1	199840	+		28985	21805	16753	16754	35728	35728					0.01723615787614108
LYQERQSPG	9	Unmodified	_LYQERQSPG_					0	0	0			REV__ENSG00000198515|ENST00000514170|CNGA1	REV__ENSG00000198515|ENST00000514170|CNGA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8291625976562	2	539.269813	1076.52507	0.69837	0.00037661	-0.40049	-0.00021597	0.29788	0.00016064	539.7692478500187	44.553	0.63371	44.553	44.357	44.991	0					41	22	4	0	0	0	0.20651	1	9961	9961		26.884	1.4843	1	454680	+		28986	18828	16754	16755	35729	35729					-0.010129195675290248
LYQETGPKAF	10	Unmodified	_LYQETGPKAF_					0	0	0			REV__ENSG00000130340|ENST00000392185|SNX9	REV__ENSG00000130340|ENST00000392185|SNX9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3110961914062	2	577.298039	1152.58152	0.16343	9.4348E-05	-3.8276	-0.0022096	-3.6641	-0.0021153	577.7969203344838	64.903	0.51042	64.903	64.647	65.157	0					39	18	3	0	0	0	0.35558	1	16196	16196		11.64	1.4569	1	231070	+		28987	15451	16755	16756	35730	35730					0.011337082691625255
LYQETGPKAF	10	Unmodified	_LYQETGPKAF_					0	0	0			REV__ENSG00000130340|ENST00000392185|SNX9	REV__ENSG00000130340|ENST00000392185|SNX9	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	577.298039	1152.58152	0.16343	9.4348E-05	-3.8276	-0.0022096	-3.6641	-0.0021153	577.7969203344838	64.903	0.51042	64.903	64.647	65.157	0	-0.016148	-0.001081	NaN	11.64	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231070	+		28988	15451	16755	16756							0.011337082691625255
LYQEVFGRL	9	Unmodified	_LYQEVFGRL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8085327148438	2	562.808574	1123.60259	0.12599	7.0909E-05	-0.047503	-2.6735E-05	0.078488	4.4174E-05	562.8084344395998	59.513	0.57821	59.513	59.241	59.819	0					41	19	3	0	0	0	0.0019382	2	14491	14491;14506		110.79	63.198	1	1604000			28989	1207	16756	16757	35731;35732	35731					0.04573718368669688
LYQEVFGRL	9	Unmodified	_LYQEVFGRL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8087158203125	2	562.808574	1123.60259	0.30577	0.00017209	-0.14308	-8.0527E-05	0.16269	9.1565E-05	562.8083820318145	59.323	0.72608	59.414	59.126	59.852	0.091301					53	25	3	0	0	0	0.0011116	1	14438	14438		121.35	67.513	1	1660200			28990	1207	16756	16757	35733	35733					0.04573718368669688
LYQEVFGRL	9	Unmodified	_LYQEVFGRL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8086547851562	2	562.808574	1123.60259	0.41835	0.00023545	-0.28132	-0.00015833	0.13703	7.7123E-05	562.8084274421417	59.484	0.62481	59.472	59.225	59.85	-0.011486					46	21	3	0	0	0	0.0019382	1	14474	14474		110.79	64.772	1	1785000			28991	1207	16756	16757	35734	35734					0.04573718368669688
LYQEYNAYL	9	Unmodified	_LYQEYNAYL_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.805419921875	2	588.782222	1175.54989	0.39315	0.00023148	0.17807	0.00010485	0.57122	0.00033633	588.7823854579714	62.857	0.37978	62.857	62.689	63.068	0					21	13	2	0	0	0	0.12329	1	15554	15554		49.554	30.192	1	215360			28992	3229	16757	16758	35735	35735					-0.030862844848115856
LYQEYNAYL	9	Unmodified	_LYQEYNAYL_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.8055419921875	2	588.782222	1175.54989	0.40553	0.00023877	-0.23743	-0.0001398	0.16809	9.897E-05	588.7820633938511	62.756	0.3833	62.852	62.602	62.985	0.095722					24	13	3	0	0	0	0.11018	1	15456	15456		53.404	25.775	1	231410			28993	3229	16757	16758	35736	35736					-0.030862844848115856
LYQEYNAYL	9	Unmodified	_LYQEYNAYL_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.8054809570312	2	588.782222	1175.54989	0.31355	0.00018461	0.3228	0.00019006	0.63635	0.00037467	589.2839435724262	62.879	0.40061	62.871	62.675	63.076	-0.0085564					21	14	2	0	0	0	0.11018	1	15543	15543		53.404	19.002	1	242510			28994	3229	16757	16758	35737	35737					-0.030862844848115856
LYQFNPAFF	9	Unmodified	_LYQFNPAFF_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.7846069335938	2	573.784567	1145.55458	0.43761	0.00025109	0.088813	5.0959E-05	0.52642	0.00030205	573.7844899842903	85.215	2.0096	85.215	84.823	86.832	0					255	78	5	0	0	0	0.00268	5	22339	22339;22384;22433;22517;22589		104.8	64.327	1	6541900			28995	7093	16758	16759	35738;35739;35740;35741;35742	35738					-0.012373555513931933
LYQFNPAFF	9	Unmodified	_LYQFNPAFF_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.7847900390625	2	573.784567	1145.55458	0.54136	0.00031063	-0.052139	-2.9917E-05	0.48922	0.00028071	573.7844356970883	85.14	2.0991	85.221	84.831	86.93	0.080879					217	82	4	0	0	0	0.0017972	5	22342	22300;22342;22393;22439;22490		112.59	84.106	1	6064400			28996	7093	16758	16759	35743;35744;35745;35746;35747	35744					-0.012373555513931933
LYQFNPAFF	9	Unmodified	_LYQFNPAFF_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8316650390625	2	573.784567	1145.55458	0.41173	0.00023624	0.71011	0.00040745	1.1218	0.00064369	574.2871376582649	87.125	0.34391	87.213	86.961	87.305	0.087097					20	13	2	0	0	0	0.19839	1	22894	22894		28.487	12.64	1	160560			28997	7093	16758	16759	35748	35748					-0.012373555513931933
LYQFNPAFF	9	Unmodified	_LYQFNPAFF_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.7848510742188	2	573.784567	1145.55458	0.4536	0.00026027	0.033781	1.9383E-05	0.48738	0.00027965	573.784511563296	85.225	2.0231	85.212	84.836	86.859	-0.01284					221	78	4	0	0	0	0.0014051	6	22364	22316;22364;22411;22461;22522;22600		117.6	70.147	1	6949700			28998	7093	16758	16759	35749;35750;35751;35752;35753;35754	35750					-0.012373555513931933
LYQFNPAFF	9	Unmodified	_LYQFNPAFF_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	573.784567	1145.55458	0.3954	0.00022688	0.63962	0.000367	1.035	0.00059388	574.286812773156	87.383	0.3636	87.383	87.194	87.558	0	0.084968	-2.3112E-05	NaN	28.487	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108230			28999	7093	16758	16759							-0.012373555513931933
LYQGLLPSLP	10	Unmodified	_LYQGLLPSLP_					0	0	0		ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;nc|ENSG00000143093|Q5VSL9-3|STRIP1;ENST00000473429.5_1_1:110584363-110592127:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.8212890625	2	550.82115	1099.62775	0.49365	0.00027191	0.037457	2.0632E-05	0.53111	0.00029254	550.8208121397892	53.922	2.0557	53.978	52.828	54.883	0.056255					162	76	3	0	0	0	0.31039	1	12723	12723		18.146	4.2403	1	724410			29000	4478	16759	16760	35755	35755					0.08191773171233763
LYQHAVEYF	9	Unmodified	_LYQHAVEYF_					0	0	0		VPS4A|p.K148Nfs*60|1|0.65|ENSG00000132612|chr16:69318915-69318916|-/CAAT|frameshift_variant;ENSG00000132612|ENST00000254950|VPS4A	VPS4A|p.K148Nfs*60|1|0.65|ENSG00000132612|chr16:69318915-69318916|-/CAAT|frameshift_variant	VPS4A|p.K148Nfs*60|1|0.65|ENSG00000132612|chr16:69318915-69318916|-/CAAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.2850341796875	2	585.284931	1168.55531	0.32385	0.00018955	0.48832	0.0002858	0.81217	0.00047535	585.2852203814225	49.967	0.56594	49.967	49.701	50.267	0					55	20	4	0	0	0	0.00045155	3	11522	11522;11570;11615		129.77	81.426	1	1450700			29001	3653	16760	16761	35756;35757;35758	35756					-0.022225609023507786
LYQHAVEYF	9	Unmodified	_LYQHAVEYF_					0	0	0		VPS4A|p.K148Nfs*60|1|0.65|ENSG00000132612|chr16:69318915-69318916|-/CAAT|frameshift_variant;ENSG00000132612|ENST00000254950|VPS4A	VPS4A|p.K148Nfs*60|1|0.65|ENSG00000132612|chr16:69318915-69318916|-/CAAT|frameshift_variant	VPS4A|p.K148Nfs*60|1|0.65|ENSG00000132612|chr16:69318915-69318916|-/CAAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.28515625	2	585.284931	1168.55531	0.45656	0.00026721	0.37446	0.00021916	0.83101	0.00048638	585.285058309391	49.953	0.52123	49.998	49.721	50.242	0.044891					60	19	4	0	0	0	0.0016361	3	11518	11518;11567;11594		114.65	84.013	1	1739900			29002	3653	16760	16761	35759;35760;35761	35759					-0.022225609023507786
LYQHAVEYF	9	Unmodified	_LYQHAVEYF_					0	0	0		VPS4A|p.K148Nfs*60|1|0.65|ENSG00000132612|chr16:69318915-69318916|-/CAAT|frameshift_variant;ENSG00000132612|ENST00000254950|VPS4A	VPS4A|p.K148Nfs*60|1|0.65|ENSG00000132612|chr16:69318915-69318916|-/CAAT|frameshift_variant	VPS4A|p.K148Nfs*60|1|0.65|ENSG00000132612|chr16:69318915-69318916|-/CAAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.2850341796875	2	585.284931	1168.55531	0.55119	0.00032261	0.37094	0.0002171	0.92213	0.00053971	585.285011317666	49.941	0.58698	49.961	49.694	50.281	0.020691					67	21	4	0	0	0	9.2305E-05	3	11551	11503;11551;11602		142.08	98.221	1	1448700			29003	3653	16760	16761	35762;35763;35764	35763					-0.022225609023507786
LYQHEINLF	9	Unmodified	_LYQHEINLF_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8060302734375	2	588.806031	1175.59751	0.43157	0.00025411	-0.057929	-3.4109E-05	0.37364	0.00022	588.8058131191466	58.728	0.91135	58.728	58.468	59.38	0					100	31	4	0	0	0	0.00012108	3	14263	14221;14263;14313		137.42	55.534	1	4620900			29004	2677	16761	16762	35765;35766;35767	35766					0.016734145060127048
LYQHEINLF	9	Unmodified	_LYQHEINLF_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.805908203125	2	588.806031	1175.59751	0.38945	0.00022931	-0.012557	-7.3938E-06	0.37689	0.00022192	588.8058699821962	58.61	1.0153	58.701	58.393	59.408	0.091301					109	35	4	0	0	0	4.3828E-07	3	14207	14157;14207;14258		163.04	81.146	1	3799000			29005	2677	16761	16762	35768;35769;35770	35769					0.016734145060127048
LYQHEINLF	9	Unmodified	_LYQHEINLF_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.8060302734375	2	588.806031	1175.59751	0.49914	0.0002939	-0.19355	-0.00011397	0.30559	0.00017993	588.8057301957449	58.777	0.99237	58.762	58.523	59.515	-0.014267					103	34	4	0	0	0	0.00012108	2	14276	14231;14276		137.42	62.495	1	5355900			29006	2677	16761	16762	35771;35772	35772					0.016734145060127048
LYQHLFWF	8	Unmodified	_LYQHLFWF_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.31103515625	2	577.295102	1152.57565	0.34003	0.0001963	2.4672	0.0014243	2.8072	0.0016206	577.7971488837773	64.805	0.45034	64.898	64.718	65.168	0.09288					28	16	2	0	0	0	0.39956	1	16157	16157		19.439	0.18201	1	208460			29007	8130	16762	16763	35773	35773					0.00546654548134029
LYQHLFWF	8	Unmodified	_LYQHLFWF_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3112182617188	2	577.295102	1152.57565	0.067709	3.9088E-05	2.9316	0.0016924	2.9993	0.0017315	577.7971857785902	64.968	0.53761	64.957	64.75	65.288	-0.011337					30	19	2	0	0	0	0.42446	1	16198	16198		14.582	1.5392	1	285000			29008	8130	16762	16763	35774	35774					0.00546654548134029
LYQILTDFDIR	11	Unmodified	_LYQILTDFDIR_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENST00000562367.1_1_16:58208309-58230657:-|nuORF	ENSG00000070770|ENST00000262506|CSNK2A2	ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2540283203125	3	466.253882	1395.73982	0.25182	0.00011741	-0.12367	-5.7661E-05	0.12815	5.9749E-05	466.25380566494005	40.303	0.91122	40.396	39.994	40.905	0.09267					86	32	4	0	0	0	0.33287	1	8551	8551		1.3296	0.11481	1	1507400			29009	941	16763	16764	35775	35775					0.05777582457585595
LYQIYIDEL	9	Unmodified	_LYQIYIDEL_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP;ENST00000588016.1_1_19:45556410-45561362:+|nuORF	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.2881469726562	2	585.308072	1168.60159	0.026734	1.5648E-05	1.3299	0.0007784	1.3566	0.00079405	585.3087126102128	59.826	0.505	59.826	59.621	60.126	0					33	17	3	0	0	0	0.2322	1	14647	14647		14.838	4.0143	1	359110			29010	1926	16764	16765	35776	35776					0.024034592090856677
LYQIYIDEL	9	Unmodified	_LYQIYIDEL_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP;ENST00000588016.1_1_19:45556410-45561362:+|nuORF	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	585.308072	1168.60159	-0.094295	-5.5192E-05	1.0285	0.00060197	0.93418	0.00054678	585.3085383565598	59.703	0.44014	59.798	59.521	59.961	0.095093	-0.032896	-0.00019079	NaN	14.838	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218800			29011	1926	16764	16765							0.024034592090856677
LYQIYIDEL	9	Unmodified	_LYQIYIDEL_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP;ENST00000588016.1_1_19:45556410-45561362:+|nuORF	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	585.308072	1168.60159	0.29628	0.00017342	1.01	0.00059118	1.3063	0.00076459	585.3083462087385	59.881	0.34689	59.869	59.621	59.968	-0.011486	0.038231	-0.00021239	NaN	14.838	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382660			29012	1926	16764	16765							0.024034592090856677
LYQKDFLRI	9	Unmodified	_LYQKDFLRI_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6;nc|ENSG00000139926|Q96NE9-3|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.8207397460938	2	598.345323	1194.67609	0.45337	0.00027127	-0.072635	-4.3461E-05	0.38074	0.00022781	598.3451451497085	50.039	0.26469	50.039	49.843	50.108	0					11	9	2	0	0	0	0.22674	1	11571	11571		22.736	5.794	1	215600			29013	4273	16765	16766	35777	35777					0.08654266811140587
LYQKDFLRI	9	Unmodified	_LYQKDFLRI_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6;nc|ENSG00000139926|Q96NE9-3|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.8207397460938	2	598.345323	1194.67609	0.64615	0.00038662	-1.312	-0.00078505	-0.66589	-0.00039843	598.3444728194777	50.011	0.30131	50.032	49.876	50.177	0.020691					16	10	2	0	0	0	0.22674	1	11560	11560		22.736	5.794	1	191840			29014	4273	16765	16766	35778	35778					0.08654266811140587
LYQKLASTITK	11	Unmodified	_LYQKLASTITK_					0	0	0			REV__ENST00000506020.5_1_4:148867718-148993229:+|nuORF	REV__ENST00000506020.5_1_4:148867718-148993229:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.89227294921875	3	422.586972	1264.73909	-0.12835	-5.4239E-05	0.65484	0.00027673	0.52649	0.00022249	422.5874471077494	26.753	0.28165	26.753	26.644	26.925	0					13	9	2	0	0	0	0.33334	1	4417	4417		1.2148	0.51716	1	26041	+		29015	13742	16766	16767	35779	35779					0.11730787808505738
LYQLANFRK	9	Unmodified	_LYQLANFRK_					0	0	0			REV__ENSG00000139329|ENST00000266718|LUM	REV__ENSG00000139329|ENST00000266718|LUM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.27099609375	2	576.82984	1151.64513	0.2129	0.00012281	-0.26914	-0.00015525	-0.056242	-3.2442E-05	576.8296432025452	49.985	0.40259	49.985	49.763	50.166	0					19	14	2	0	0	0	0.25526	1	11562	11562		7.9102	1.187	1	149700	+		29016	15981	16767	16768	35780	35780					0.07537113496891834
LYQLQVNTL	9	Unmodified	_LYQLQVNTL_					0	0	0		ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.3088989257812	2	546.308406	1090.60226	0.45328	0.00024763	-0.39607	-0.00021637	0.05721	3.1254E-05	546.3082505673152	66.865	0.76407	66.865	66.545	67.309	0					64	26	3	0	0	0	0.0028626	1	16798	16798		103.35	57.333	1	961080			29017	5790	16768	16769	35781	35781					0.06058298648804339
LYQLQVNTL	9	Unmodified	_LYQLQVNTL_					0	0	0		ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.27587890625	2	546.308406	1090.60226	0.5519	0.00030151	-0.28308	-0.00015465	0.26882	0.00014686	546.3081607986519	66.787	0.70393	66.871	66.544	67.248	0.083832					71	24	5	0	0	0	0.0015055	1	16715	16715		106.94	51.437	1	1033100			29018	5790	16768	16769	35782	35782					0.06058298648804339
LYQLQVNTL	9	Unmodified	_LYQLQVNTL_					0	0	0		ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.2760009765625	2	546.308406	1090.60226	0.38949	0.00021278	-0.11107	-6.068E-05	0.27842	0.0001521	546.3081878038519	66.893	0.81436	66.879	66.511	67.325	-0.013588					64	28	3	0	0	0	0.0015055	1	16768	16768		118.07	62.566	1	951850			29019	5790	16768	16769	35783	35783					0.06058298648804339
LYQLYDNK	8	Unmodified	_LYQLYDNK_					0	0	0			REV__ENSG00000128915|ENST00000261520|ICE2	REV__ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2825317382812	2	528.771657	1055.52876	0.082133	4.343E-05	-0.67447	-0.00035664	-0.59233	-0.00031321	528.7714583695257	61.921	0.71316	62.018	61.701	62.414	0.096985					35	25	2	0	0	0	0.41097	1	15235	15235		18.135	0	1	162870	+		29020	15392	16769	16770	35784	35784					0.00321750206330762
LYQNFEKF	8	Unmodified	_LYQNFEKF_					0	0	0			REV__ENST00000476615.1_1_2:113258880-113278003:+|nuORF	REV__ENST00000476615.1_1_2:113258880-113278003:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.792724609375	2	544.7742	1087.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.997	1	69.975	69.475	70.475	-0.022087								0	0	0	0.34492	1	17705	17705		16.942	1.0951	1		+		29021	14857	16770	16771	35785	35785					-0.00641945931056398
LYQPNFNTNF	10	Unmodified	_LYQPNFNTNF_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.298828125	2	629.29857	1256.58259	0.33892	0.00021328	0.55961	0.00035216	0.89852	0.00056544	629.2989881583452	66.983	0.65459	66.983	66.744	67.398	0					67	22	4	0	0	0	0.0012219	1	16776	16776		117.84	86.569	1	1054600			29022	8708	16771	16772	35786	35786					-0.03544077361948439
LYQPNFNTNF	10	Unmodified	_LYQPNFNTNF_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.2989501953125	2	629.29857	1256.58259	0.14371	9.0437E-05	0.45966	0.00028927	0.60337	0.0003797	629.2988747399244	66.862	0.59061	66.946	66.684	67.274	0.083832					63	20	4	0	0	0	0.002913	1	16733	16733		103.82	65.648	1	1100300			29023	8708	16771	16772	35787	35787					-0.03544077361948439
LYQPNFNTNF	10	Unmodified	_LYQPNFNTNF_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.2988891601562	2	629.29857	1256.58259	0.11175	7.0323E-05	0.38841	0.00024443	0.50016	0.00031475	629.2988195205137	66.991	0.88139	66.978	66.714	67.596	-0.013588					73	30	4	0	0	0	0.011792	1	16748	16748		80.676	55.685	1	1161800			29024	8708	16771	16772	35788	35788					-0.03544077361948439
LYQPQYLF	8	Unmodified	_LYQPQYLF_					0	0	0			REV__ENSG00000104408|ENST00000220849|EIF3E	REV__ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2792358398438	2	536.279118	1070.54368	0.31076	0.00016665	-2.0286	-0.0010879	-1.7178	-0.00092122	536.278611376595	75.718	1.6753	75.771	74.612	76.288	0.052361					193	60	5	0	0	0	0.38703	1	19330	19330		20.871	1.4322	1	42413000	+		29025	14407	16772	16773	35789	35789					0.011232420743226612
LYQPQYLF	8	Unmodified	_LYQPQYLF_					0	0	0			REV__ENSG00000104408|ENST00000220849|EIF3E	REV__ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.289794921875	2	536.279118	1070.54368	0.61728	0.00033103	1.036	0.00055556	1.6532	0.00088659	536.7810779040065	72.797	0.4724	72.767	72.455	72.927	-0.029305					24	16	2	0	0	0	0.33916	1	18527	18527		26.341	2.3207	1	180120	+		29026	14407	16772	16773	35790	35790					0.011232420743226612
LYQQDGHPLVP	11	Unmodified	_LYQQDGHPLVP_					0	0	0			REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.2120056152344	3	422.887422	1265.64044	0.24326	0.00010287	2.9691	0.0012556	3.2124	0.0013585	423.2231989355131	54.461	0.46844	54.461	54.268	54.736	0					25	16	2	0	0	0	0.36257	1	12988	12988		9.2438	0.49199	1	358630	+		29027	14208	16773	16774	35791	35791					0.01824184563452036
LYQRAFQHL	9	Unmodified	_LYQRAFQHL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3502807617188	2	588.31964	1174.62473	0.5955	0.00035034	-0.11185	-6.5805E-05	0.48365	0.00028454	588.3195535941818	36.811	0.83459	36.811	36.562	37.397	0					68	29	3	0	0	0	0.20167	1	7631	7631		29.082	29.082	1	1374900			29028	8602	16774	16775	35792	35792					0.0443994283707525
LYQRAFQHL	9	Unmodified	_LYQRAFQHL_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.3505859375	2	588.31964	1174.62473	0.74805	0.00044009	-0.24382	-0.00014344	0.50423	0.00029665	588.319485295259	36.729	0.91302	36.822	36.51	37.423	0.093014					71	32	3	0	0	0	0.1939	1	7592	7592		30.637	10.183	1	1407500			29029	8602	16774	16775	35793	35793					0.0443994283707525
LYQRIEMPF	9	Unmodified	_LYQRIEMPF_					0	0	0			REV__nc|ENSG00000115415|P42224-2|STAT1	REV__nc|ENSG00000115415|P42224-2|STAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.2767333984375	2	598.810259	1195.60597	0.51098	0.00030598	2.392	0.0014324	2.903	0.0017383	598.8116989196857	58.795	0.37287	58.795	58.682	59.055	0					22	12	3	0	0	0	0.25202	1	14290	14290		10.824	0	1	284070	+		29030	14877	16775	16776	35794	35794					0.01598645151011624
LYQRPGKNF	9	Unmodified	_LYQRPGKNF_					0	0	0		ENST00000503503.5_1_4:41035307-41102677:-|nuORF	ENST00000503503.5_1_4:41035307-41102677:-|nuORF	ENST00000503503.5_1_4:41035307-41102677:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.8143920898438	2	561.806365	1121.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.911	1	64.911	64.411	65.411	0								0	0	0	0.14428	1	16163	16163		36.044	8.4154	1				29031	11292	16776	16777	35795	35795					0.04224253945744749
LYQRPGPG	8	Unmodified	_LYQRPGPG_					0	0	0		ENSG00000070526|ENST00000156626|ST6GALNAC1;ENST00000592042.5_1_17:74621414-74633692:-|nuORF	ENSG00000070526|ENST00000156626|ST6GALNAC1	ENSG00000070526|ENST00000156626|ST6GALNAC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	444.9165344238281	2	444.240327	886.466101	0.39483	0.0001754	1.4657	0.00065111	1.8605	0.00082651	444.240946375145	55.589	0.45602	55.66	55.398	55.854	0.070885					28	16	2	0	0	0	0.34297	1	13311	13311		2.8892	0	1	232710			29032	931	16777	16778	35796	35796					0.01832648928814251
LYQVEKEMEE	10	Unmodified	_LYQVEKEMEE_					0	0	0		nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B;nc|ENSG00000089177|Q96L93-2|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.3023681640625	2	649.302661	1296.59077	0.8392	0.0005449	-1.1179	-0.00072584	-0.27867	-0.00018094	649.3019831763521	55.745	0.59376	55.745	55.507	56.101	0					33	20	2	0	0	0	0.12843	1	13332	13332		41.84	3.6641	1	1173000			29033	1352	16778	16779	35797	35797					-0.04566311227472397
LYQVESQLM	9	Unmodified	_LYQVESQLM_					0	0	0			REV__ENST00000261868.9_1_15:44853434-44853497:+|nuORF	REV__ENST00000261868.9_1_15:44853434-44853497:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7966918945312	2	555.778625	1109.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.349	1	40.349	39.849	40.849	0								0	0	0	0.20238	1	8597	8597		21.747	1.293	1		+		29034	19603	16779	16780	35798	35798					-0.007693403568737267
LYQVHYEW	8	Unmodified	_LYQVHYEW_					0	0	0		nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.7412719726562	2	569.271824	1136.5291	0.43339	0.00024671	0.11312	6.4398E-05	0.54651	0.00031111	569.2719640515667	48.454	0.61732	48.497	48.168	48.785	0.04332					40	22	2	0	0	0	0.34046	1	10986	10986		14.582	12.737	1	1206000			29035	5150	16780	16781	35799	35799					-0.03370830073822617
LYQVHYEW	8	Unmodified	_LYQVHYEW_					0	0	0		nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.271824	1136.5291	0.39056	0.00022234	-0.19569	-0.0001114	0.19488	0.00011094	569.2715586451052	48.59	0.55861	48.59	48.268	48.827	0	0.026559	-1.0249E-06	NaN	14.582	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1020300			29036	5150	16780	16781							-0.03370830073822617
LYQVHYEW	8	Unmodified	_LYQVHYEW_					0	0	0		nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	569.271824	1136.5291	0.68208	0.00038829	-0.4097	-0.00023323	0.27239	0.00015506	569.2715236322106	48.558	0.62321	48.604	48.284	48.907	0.04583	0.039976	-0.00024468	NaN	14.582	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	972240			29037	5150	16780	16781							-0.03370830073822617
LYQYLETTA	9	Unmodified	_LYQYLETTA_					0	0	0			REV__nc|ENSG00000152409|Q8N9B5-2|JMY	REV__nc|ENSG00000152409|Q8N9B5-2|JMY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7765502929688	2	551.276772	1100.53899	0.52622	0.00029009	-0.025444	-1.4027E-05	0.50078	0.00027607	551.776285679106	87.905	0.91551	87.905	87.416	88.331	0					96	44	4	0	0	0	0.27532	1	23220	23220		12.532	3.9383	1	465060	+		29038	16575	16781	16782	35800	35800					-0.0072568685909573105
LYRAPLAALL	10	Unmodified	_LYRAPLAALL_					0	0	0			REV__nc|ENSG00000155719|Q7RTW8-4|OTOA	REV__nc|ENSG00000155719|Q7RTW8-4|OTOA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2771606445312	2	550.844959	1099.67537	0.17559	9.6725E-05	-0.085156	-4.6908E-05	0.090437	4.9817E-05	550.8450024899345	73.911	0.69367	73.911	73.497	74.191	0					33	23	2	0	0	0	0.31482	1	18790	18790		11.64	0	1	138620	+		29039	16707	16782	16783	35801	35801					0.1295147216208079
LYRARLLHEI	10	Unmodified	_LYRARLLHEI_					0	0	0			REV__ENST00000322602.9_1_5:153418645-153418858:+|nuORF	REV__ENST00000322602.9_1_5:153418645-153418858:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.3668823242188	2	642.382771	1282.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.989	1	56.989	56.489	57.489	0								0	0	0	0.34755	1	13723	13723		15.847	3.6065	1		+		29040	19978	16783	16784	35802	35802					0.12092449342367217
LYRARLLHEI	10	Unmodified	_LYRARLLHEI_					0	0	0			REV__ENST00000322602.9_1_5:153418645-153418858:+|nuORF	REV__ENST00000322602.9_1_5:153418645-153418858:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.366943359375	2	642.382771	1282.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.994	1	56.975	56.475	57.475	-0.019081								0	0	0	0.35948	1	13718	13718		10.824	1.4408	1		+		29041	19978	16783	16784	35803	35803					0.12092449342367217
LYRDFSTFL	9	Unmodified	_LYRDFSTFL_					0	0	0		ENST00000326764.9_2_19:54972187-54972391:+|nuORF	ENST00000326764.9_2_19:54972187-54972391:+|nuORF	ENST00000326764.9_2_19:54972187-54972391:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.8303833007812	2	581.300581	1160.58661	0.41053	0.00023864	0.7054	0.00041005	1.1159	0.00064869	581.3013662508024	72.115	0.70459	72.172	71.706	72.411	0.056572					38	25	2	0	0	0	0.16284	1	18254	18254		37.974	1.4678	1	224230			29042	9418	16784	16785	35804	35804					0.012740121317619924
LYRDLSIF	8	Unmodified	_LYRDLSIF_					0	0	0			REV__ENSG00000121966|ENST00000241393|CXCR4	REV__ENSG00000121966|ENST00000241393|CXCR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.784423828125	2	513.784567	1025.55458	0.3683	0.00018923	-0.27499	-0.00014128	0.093313	4.7943E-05	513.7843441751651	79.302	0.82684	79.363	78.922	79.749	0.061409					70	36	3	0	0	0	0.43727	1	20596	20596		10.183	0	1	382410	+		29043	15140	16785	16786	35805	35805					0.04282644448608153
LYRDVTLE	8	Unmodified	_LYRDVTLE_					0	0	0		ENSG00000204514|ENST00000435989|ZNF814;ZNF587B|p.S183Pfs*39|1|0.05|ENSG00000269343|chr19:57841220-57841221|-/CC|frameshift_variant;ZNF587B|p.G184Qfs*38|1|0.04|ENSG00000269343|chr19:57841221-57841222|-/CA|frameshift_variant;nc|ENSG00000269343|E7ETH6|ZNF587B;ENST00000596248.1_1_19:58319410-58325921:-|nuORF;ENSG00000178935|ENST00000391701|ZNF552;ENSG00000269343|ENST00000594901|ZNF587B;ENST00000597134.5_3_19:58350396-58367491:+|nuORF;ENST00000600397.1_1_19:58324632-58324782:-|nuORF;ENST00000415440.3_1_19:19788663-19789591:+|nuORF;ENST00000594629.1_1_19:58382130-58400344:-|nuORF;ENSG00000181896|ENST00000592502|ZNF101	ENSG00000204514|ENST00000435989|ZNF814;ENSG00000181896|ENST00000592502|ZNF101	ENSG00000204514|ENST00000435989|ZNF814	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7844543457031	2	504.771657	1007.52876	0.56839	0.00028691	2.7217	0.0013739	3.2901	0.0016608	504.77197326619074	64.2	0.81796	64.2	63.665	64.483	0					55	29	4	0	0	0	0.23581	1	15865	15865		38.151	4.0487	1	446990			29044	8232;7258	16786	16787	35806	35806					0.02529750206326753
LYRDVTLE	8	Unmodified	_LYRDVTLE_					0	0	0		ENSG00000204514|ENST00000435989|ZNF814;ZNF587B|p.S183Pfs*39|1|0.05|ENSG00000269343|chr19:57841220-57841221|-/CC|frameshift_variant;ZNF587B|p.G184Qfs*38|1|0.04|ENSG00000269343|chr19:57841221-57841222|-/CA|frameshift_variant;nc|ENSG00000269343|E7ETH6|ZNF587B;ENST00000596248.1_1_19:58319410-58325921:-|nuORF;ENSG00000178935|ENST00000391701|ZNF552;ENSG00000269343|ENST00000594901|ZNF587B;ENST00000597134.5_3_19:58350396-58367491:+|nuORF;ENST00000600397.1_1_19:58324632-58324782:-|nuORF;ENST00000415440.3_1_19:19788663-19789591:+|nuORF;ENST00000594629.1_1_19:58382130-58400344:-|nuORF;ENSG00000181896|ENST00000592502|ZNF101	ENSG00000204514|ENST00000435989|ZNF814;ENSG00000181896|ENST00000592502|ZNF101	ENSG00000204514|ENST00000435989|ZNF814	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2640075683594	2	504.771657	1007.52876	0.54504	0.00027512	2.4456	0.0012345	2.9907	0.0015096	504.77190346549446	64.233	0.61839	64.223	63.99	64.608	-0.0095291					49	22	3	0	0	0	0.30517	1	15994	15994		30.225	10.786	1	423780			29045	8232;7258	16786	16787	35807	35807					0.02529750206326753
LYREAFQLD	9	Unmodified	_LYREAFQLD_					0	0	0			REV__ENSG00000137745|ENST00000260302|MMP13	REV__ENSG00000137745|ENST00000260302|MMP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.79541015625	2	577.795663	1153.57677	0.12706	7.3417E-05	0.94129	0.00054387	1.0684	0.00061729	577.7957832250233	61.671	0.83109	61.671	61.461	62.292	0					59	30	3	0	0	0	0.21447	1	15287	15287		21.537	6.6987	1	581320	+		29046	15881	16787	16788	35808	35808					0.006128241263922973
LYRHRKRF	8	Unmodified	_LYRHRKRF_					0	0	0			REV__ENST00000438724.5_1_13:79951611-79952941:-|nuORF	REV__ENST00000438724.5_1_13:79951611-79952941:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.7479248046875	2	588.349066	1174.68358	0.40897	0.00024062	-1.1469	-0.00067476	-0.7379	-0.00043414	588.3482362739966	44.309	0.44264	44.384	44.2	44.643	0.07505					24	15	2	0	0	0	0.34185	1	9823	9823		10.183	0	1	259980	+		29047	21032	16788	16789	35809	35809					0.10322463922079805
LYRLEFGLF	9	Unmodified	_LYRLEFGLF_					0	0	0		ENST00000361272.8_2_8:17087834-17087987:-|nuORF	ENST00000361272.8_2_8:17087834-17087987:-|nuORF	ENST00000361272.8_2_8:17087834-17087987:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.2785034179688	2	579.321317	1156.62808	0.34127	0.00019771	-0.0061358	-3.5546E-06	0.33514	0.00019415	579.3211501717648	68.276	0.66022	68.257	67.938	68.598	-0.01915					47	23	3	0	0	0	0.2451	1	17223	17223		15.847	0	1	549200			29048	9688	16789	16790	35810	35810					0.056031928910670104
LYRLEFGLF	9	Unmodified	_LYRLEFGLF_					0	0	0		ENST00000361272.8_2_8:17087834-17087987:-|nuORF	ENST00000361272.8_2_8:17087834-17087987:-|nuORF	ENST00000361272.8_2_8:17087834-17087987:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	579.321317	1156.62808	0.25377	0.00014701	0.23759	0.00013764	0.49136	0.00028465	579.321265114956	68.228	0.49155	68.228	67.97	68.462	0	-0.013428	0.00022242	NaN	15.847	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262010			29049	9688	16789	16790							0.056031928910670104
LYRLEFGLF	9	Unmodified	_LYRLEFGLF_					0	0	0		ENST00000361272.8_2_8:17087834-17087987:-|nuORF	ENST00000361272.8_2_8:17087834-17087987:-|nuORF	ENST00000361272.8_2_8:17087834-17087987:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	579.321317	1156.62808	0.29406	0.00017035	0.011048	6.4005E-06	0.30511	0.00017675	579.3210876408435	68.168	0.51454	68.24	67.945	68.459	0.071938	-0.0018533	-4.0062E-05	NaN	15.847	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362230			29050	9688	16789	16790							0.056031928910670104
LYRLENIS	8	Unmodified	_LYRLENIS_					0	0	0		BANK1|p.F65I|1|0.29|ENSG00000153064|chr4:101829930-101829930|T/A|missense_variant	BANK1|p.F65I|1|0.29|ENSG00000153064|chr4:101829930-101829930|T/A|missense_variant	BANK1|p.F65I|1|0.29|ENSG00000153064|chr4:101829930-101829930|T/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.79766845703125	2	504.279649	1006.54475	0.32437	0.00016357	2.6217	0.0013221	2.9461	0.0014857	504.2797968142528	68.02	0.20441	68.004	67.838	68.043	-0.016296					11	6	2	0	0	0	0.3366	1	17058	17058		18.135	2.2878	1	82165			29051	68	16790	16791	35811	35811					0.04173456443231771
LYRLKFNEF	9	Unmodified	_LYRLKFNEF_					0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	615.3375854492188	2	615.337498	1228.66044	0.40517	0.00024932	-0.23582	-0.00014511	0.16935	0.00010421	615.3372191703623	53.671	0.80081	53.671	53.414	54.214	0					85	29	4	0	0	0	5.6536E-07	3	12707	12663;12707;12758		173.69	88.045	1	2123700			29052	7728	16791	16792	35812;35813;35814	35813					0.05525980294078181
LYRLKFNEF	9	Unmodified	_LYRLKFNEF_					0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.5606689453125	3	410.560758	1228.66044	0.027696	1.1371E-05	-0.26987	-0.0001108	-0.24218	-9.9428E-05	410.560642091883	53.61	1.0731	53.666	53.379	54.452	0.056255					135	40	6	0	0	0	0.0047555	3	12684	12641;12684;12731		88.364	46.051	1	5463500			29053	7728	16791	16792	35815;35816;35817	35816					0.05525980294078181
LYRLKFNEF	9	Unmodified	_LYRLKFNEF_					0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	615.3374633789062	2	615.337498	1228.66044	0.062414	3.8405E-05	0.07582	4.6655E-05	0.13823	8.506E-05	615.3374440304514	53.617	0.7802	53.674	53.431	54.212	0.056255					80	29	4	0	0	0	0.00013162	2	12655	12655;12701		160.69	84.929	1	2073700			29054	7728	16791	16792	35818;35819	35818					0.05525980294078181
LYRLKFNEF	9	Unmodified	_LYRLKFNEF_					0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	615.337646484375	2	615.337498	1228.66044	0.3633	0.00022356	-0.15024	-9.245E-05	0.21306	0.0001311	615.3373281659227	54.019	0.81126	54.003	53.738	54.55	-0.015923					81	28	4	0	0	0	6.3871E-05	2	12785	12785;12840		160.69	84.929	1	2096400			29055	7728	16791	16792	35820;35821	35820					0.05525980294078181
LYRLLPVLV	9	Unmodified	_LYRLLPVLV_					0	0	0		ENST00000334062.7_1_13:114747426-114747723:-|nuORF	ENST00000334062.7_1_13:114747426-114747723:-|nuORF	ENST00000334062.7_1_13:114747426-114747723:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8078002929688	2	543.357702	1084.70085	0.80994	0.00044009	-0.74737	-0.00040609	0.062571	3.3999E-05	543.3571290031462	78.537	1.1933	78.537	78.195	79.388	0					124	47	4	0	0	0	0.21905	1	20300	20300		23.148	1.4018	1	1850100			29056	9462	16792	16793	35822	35822					0.1618894668449684
LYRLLPVLV	9	Unmodified	_LYRLLPVLV_					0	0	0		ENST00000334062.7_1_13:114747426-114747723:-|nuORF	ENST00000334062.7_1_13:114747426-114747723:-|nuORF	ENST00000334062.7_1_13:114747426-114747723:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8078002929688	2	543.357702	1084.70085	0.8087	0.00043942	-0.56224	-0.0003055	0.24647	0.00013392	543.3572196037105	78.452	1.1431	78.511	78.226	79.369	0.058151					145	47	5	0	0	0	0.23783	1	20379	20379		18.135	6.4947	1	1993200			29057	9462	16792	16793	35823	35823					0.1618894668449684
LYRLLPVLV	9	Unmodified	_LYRLLPVLV_					0	0	0		ENST00000334062.7_1_13:114747426-114747723:-|nuORF	ENST00000334062.7_1_13:114747426-114747723:-|nuORF	ENST00000334062.7_1_13:114747426-114747723:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.807861328125	2	543.357702	1084.70085	0.99123	0.00053859	-0.75322	-0.00040927	0.23802	0.00012933	543.3570682722238	78.589	1.1458	78.559	78.248	79.394	-0.030434					151	46	6	0	0	0	0.21905	1	20308	20308		23.148	1.4018	1	1685400			29058	9462	16792	16793	35824	35824					0.1618894668449684
LYRLQEAPKK	10	Unmodified	_LYRLQEAPKK_					0	0	0		ENSG00000183709|ENST00000331982|IFNL2	ENSG00000183709|ENST00000331982|IFNL2	ENSG00000183709|ENST00000331982|IFNL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.18292236328125	3	415.915312	1244.72411	-0.21316	-8.8655E-05	0.78851	0.00032796	0.57536	0.0002393	416.24968237929613	25.133	0.58199	25.101	24.765	25.347	-0.031408					31	19	3	0	0	0	0.31867	1	3932	3932		5.0475	3.3052	1	43415			29059	7391	16793	16794	35825	35825					0.11153340731152639
LYRLQFNEF	9	Unmodified	_LYRLQFNEF_					0	0	0		ENST00000404372.1_1_6:151256177-151256594:+|nuORF;ENSG00000122644|ENST00000651779|ARL4A	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	615.7299194335938	2	615.319306	1228.62406	-0.084406	-5.1937E-05	0.14545	8.9501E-05	0.061048	3.7564E-05	615.3193438679575	65.153	0.8046	65.153	64.934	65.739	0					68	28	4	0	0	0	0.0066897	1	16222	16222		90.135	71.762	1	869640			29060	3057	16794	16795	35826	35826					0.018891033973659432
LYRLQFNEF	9	Unmodified	_LYRLQFNEF_					0	0	0		ENST00000404372.1_1_6:151256177-151256594:+|nuORF;ENSG00000122644|ENST00000651779|ARL4A	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	615.729736328125	2	615.319306	1228.62406	-0.11107	-6.8343E-05	0.25295	0.00015564	0.14188	8.7299E-05	615.319448671087	65.067	0.69565	65.156	64.933	65.628	0.088882					61	25	3	0	0	0	1.7475E-06	1	16220	16220		157.8	121.29	1	1012600			29061	3057	16794	16795	35827	35827					0.018891033973659432
LYRLQFNEF	9	Unmodified	_LYRLQFNEF_					0	0	0		ENST00000404372.1_1_6:151256177-151256594:+|nuORF;ENSG00000122644|ENST00000651779|ARL4A	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	615.319306	1228.62406	-0.087452	-5.3811E-05	0.44363	0.00027297	0.35617	0.00021916	615.3195041484585	65.159	0.68959	65.148	64.922	65.612	-0.011337	-0.0044581	0.00021359	NaN	157.8	68	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1052700			29062	3057	16794	16795							0.018891033973659432
LYRLQTQFSL	10	Unmodified	_LYRLQTQFSL_					0	0	0		ENST00000371477.3_1_6:44387294-44390412:+|nuORF	ENST00000371477.3_1_6:44387294-44390412:+|nuORF	ENST00000371477.3_1_6:44387294-44390412:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.27001953125	3	423.571434	1267.69247	-0.16522	-6.9982E-05	-1.8969	-0.00080347	-2.0621	-0.00087345	423.57051822536187	22.295	0.67218	22.295	21.922	22.594	0					40	23	2	0	0	0	0.31538	1	3045	3045		12.873	3.8964	1	104650			29063	9821	16795	16796	35828	35828					0.06933347977224003
LYRLSFLCK	9	Unmodified	_LYRLSFLCK_					0	0	0			REV__ENST00000377304.6_1_10:18940107-18940233:-|nuORF	REV__ENST00000377304.6_1_10:18940107-18940233:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.5973510742188	2	571.823169	1141.63179	0.48092	0.000275	-2.7052	-0.0015469	-2.2243	-0.0012719	571.8218134541787	48.09	0.5227	48.133	48.038	48.56	0.043324					24	19	2	0	0	0	0.23783	1	11080	11080		18.135	0	1	299130	+		29064	20504	16796	16797	35829	35829					0.06663539393298379
LYRLTNMF	8	Unmodified	_LYRLTNMF_					0	0	0			REV__ENSG00000187510|ENST00000344636|PLEKHG7	REV__ENSG00000187510|ENST00000344636|PLEKHG7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.8399658203125	2	529.278595	1056.54264	0.58888	0.00031168	-4.3417	-0.002298	-3.7528	-0.0019863	529.2738798411294	67.748	0.26874	67.826	67.628	67.897	0.078041					12	8	2	0	0	0	0.34046	1	16989	16989		14.582	1.0738	1	70345	+		29065	18506	16797	16798	35830	35830					0.01662704433761064
LYRMLRSL	8	Unmodified	_LYRMLRSL_					0	0	0		ENSG00000085998|ENST00000371984|POMGNT1;nc|ENSG00000085998|Q8WZA1-2|POMGNT1	ENSG00000085998|ENST00000371984|POMGNT1	ENSG00000085998|ENST00000371984|POMGNT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7581176757812	2	526.307687	1050.60082	0.15308	8.0567E-05	0.14136	7.44E-05	0.29444	0.00015497	526.808872144373	39.326	0.48512	39.326	39.135	39.62	0					44	17	3	0	0	0	0.34247	1	8252	8252		8.5933	0	1	410230			29066	1271	16798	16799	35831	35831					0.07754386079068354
LYRMPRRL	8	Unmodified	_LYRMPRRL_					0	0	0		ENST00000373518.1_1_X:72347145-72347370:-|nuORF	ENST00000373518.1_1_X:72347145-72347370:-|nuORF	ENST00000373518.1_1_X:72347145-72347370:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7891235351562	2	552.826578	1103.6386	0.37185	0.00020557	-2.2283	-0.0012319	-1.8565	-0.0010263	552.8249467521581	49.004	0.70978	49.049	48.935	49.645	0.044888					46	25	2	0	0	0	0.25627	1	11231	11231		38.151	0	1	843450			29067	9868	16799	16800	35832	35832					0.09092897064533645
LYRNFVKF	8	Unmodified	_LYRNFVKF_					0	0	0			REV__nc|ENSG00000119383|Q15257-4|PTPA	REV__nc|ENSG00000119383|Q15257-4|PTPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2798461914062	2	543.808377	1085.6022	0.58463	0.00031793	0.69905	0.00038015	1.2837	0.00069808	543.8085416461432	68.093	0.96674	68.171	67.744	68.711	0.078041					57	34	2	0	0	0	0.34185	1	17039	17039		10.183	10.183	1	1501600	+		29068	15038	16800	16801	35833	35833					0.06282343439465876
LYRNFVKF	8	Unmodified	_LYRNFVKF_					0	0	0			REV__nc|ENSG00000119383|Q15257-4|PTPA	REV__nc|ENSG00000119383|Q15257-4|PTPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.27978515625	2	543.808377	1085.6022	0.64211	0.00034919	0.77778	0.00042296	1.4199	0.00077215	543.8086401235244	68.171	0.78861	68.152	67.836	68.624	-0.01915					49	27	2	0	0	0	0.34185	1	17082	17082		5.7604	5.7604	1	1365400	+		29069	15038	16800	16801	35834	35834					0.06282343439465876
LYRNGDFFI	9	Unmodified	_LYRNGDFFI_					0	0	0		ENSG00000077498|ENST00000263321|TYR	ENSG00000077498|ENST00000263321|TYR	ENSG00000077498|ENST00000263321|TYR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.7925415039062	2	572.792924	1143.57129	0.14113	8.0836E-05	-0.98331	-0.00056323	-0.84218	-0.0004824	572.7922182121155	69.192	0.71773	69.192	68.9	69.618	0					60	25	3	0	0	0	0.27532	1	17464	17464		12.532	0.89125	1	1383200			29070	1091	16801	16802	35835	35835					0.005251453345636037
LYRNGDFFI	9	Unmodified	_LYRNGDFFI_					0	0	0		ENSG00000077498|ENST00000263321|TYR	ENSG00000077498|ENST00000263321|TYR	ENSG00000077498|ENST00000263321|TYR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	572.792924	1143.57129	0.3568	0.00020437	-1.2747	-0.00073015	-0.91791	-0.00052577	572.791943057506	69.17	1.9042	69.242	68.934	70.839	0.071945	0.012413	-0.00016858	NaN	12.532	115	67	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1426800			29071	1091	16801	16802							0.005251453345636037
LYRNGNNCE	9	Unmodified	_LYRNGNNCE_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7385864257812	2	541.737822	1081.46109	0.55811	0.00030235	0.32919	0.00017833	0.8873	0.00048068	541.7378586452353	56.869	0.7086	56.948	56.603	57.311	0.078674					61	26	4	0	0	0	0.28128	1	13672	13672		11.64	0.81637	1	637680	+		29072	18300	16802	16803	35836	35836					-0.07638022996115978
LYRNLSEKLK	10	Unmodified	_LYRNLSEKLK_					0	0	0		ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant;nc|ENSG00000153930|Q8N957-2|ANKFN1;ENSG00000153930|ENST00000682825|ANKFN1	ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant	ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.3750610351562	2	632.374612	1262.73467	0.59345	0.00037528	-0.31437	-0.0001988	0.27908	0.00017648	632.3744457092291	44.825	1.0056	44.825	44.552	45.558	0					87	36	4	0	0	0	0.14624	2	9927	9927;9976		49.554	20.709	1	3417700			29073	43	16803	16804	35837;35838	35837					0.11381323385603537
LYRNLSEKLK	10	Unmodified	_LYRNLSEKLK_					0	0	0		ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant;nc|ENSG00000153930|Q8N957-2|ANKFN1;ENSG00000153930|ENST00000682825|ANKFN1	ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant	ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.9188537597656	3	421.918834	1262.73467	0.20055	8.4615E-05	-0.27288	-0.00011513	-0.072332	-3.0518E-05	421.91870484743225	44.824	1.1135	44.824	44.552	45.666	0					66	40	2	0	0	0	0.27105	1	9960	9960		23.964	10.445	1	1868900			29074	43	16803	16804	35839	35839					0.11381323385603537
LYRNLSEKLK	10	Unmodified	_LYRNLSEKLK_					0	0	0		ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant;nc|ENSG00000153930|Q8N957-2|ANKFN1;ENSG00000153930|ENST00000682825|ANKFN1	ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant	ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.9186706542969	3	421.918834	1262.73467	0.15147	6.391E-05	-0.24686	-0.00010416	-0.095387	-4.0246E-05	421.9187166974812	44.64	0.82763	44.709	44.463	45.291	0.068569					53	29	2	0	0	0	0.3036	1	9898	9898		19.987	2.1237	1	1853600			29075	43	16803	16804	35840	35840					0.11381323385603537
LYRNLSEKLK	10	Unmodified	_LYRNLSEKLK_					0	0	0		ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant;nc|ENSG00000153930|Q8N957-2|ANKFN1;ENSG00000153930|ENST00000682825|ANKFN1	ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant	ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.374755859375	2	632.374612	1262.73467	0.48801	0.00030861	-0.21686	-0.00013714	0.27115	0.00017147	632.3744873296139	44.646	0.76814	44.714	44.463	45.232	0.068569					76	27	4	0	0	0	0.1693	1	9922	9922		49.554	18.286	1	3454600			29076	43	16803	16804	35841	35841					0.11381323385603537
LYRNLSEKLK	10	Unmodified	_LYRNLSEKLK_					0	0	0		ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant;nc|ENSG00000153930|Q8N957-2|ANKFN1;ENSG00000153930|ENST00000682825|ANKFN1	ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant	ANKFN1|p.T518Kfs*31|1|0.39|ENSG00000153930|chr17:56457963-56457964|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.3748779296875	2	632.374612	1262.73467	0.59797	0.00037814	-0.28518	-0.00018034	0.3128	0.0001978	632.3744606853836	44.612	1.0476	44.687	44.449	45.497	0.075047					93	38	4	0	0	0	0.12389	2	9918	9918;9970		57.722	26.454	1	3380900			29077	43	16803	16804	35842;35843	35842					0.11381323385603537
LYRNRVPLNEI	11	Unmodified	_LYRNRVPLNEI_					0	0	0		ENSG00000159363|ENST00000326735|ATP13A2;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;nc|ENSG00000159363|Q9NQ11-2|ATP13A2	ENSG00000159363|ENST00000326735|ATP13A2;nc|ENSG00000159363|Q9NQ11-2|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.2872009277344	3	462.933254	1385.77793	-0.0082748	-3.8307E-06	0.0040685	1.8834E-06	-0.0042063	-1.9472E-06	462.9333162859509	41.121	0.71173	41.211	40.77	41.482	0.090252					53	26	3	0	0	0	0.33236	1	8917	8917		4.4062	0.28952	1	236530			29078	5403;12785	16804	16805	35844	35844					0.10047513162930954
LYRPMLPF	8	Unmodified	_LYRPMLPF_					0	0	0			REV__ENST00000481096.6_1_X:51805328-51806235:-|nuORF	REV__ENST00000481096.6_1_X:51805328-51806235:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2955322265625	2	518.786056	1035.55756	0.68319	0.00035443	1.8876	0.00097927	2.5708	0.0013337	518.7870905420305	50.036	0.98504	50.081	49.669	50.654	0.044891					53	36	3	0	0	0	0.34147	1	11459	11459		11.114	11.114	1	493790	+		29079	21483	16805	16806	35845	35845					0.04120196301778378
LYRPWSGL	8	Unmodified	_LYRPWSGL_					0	0	0			REV__ENST00000482360.5_1_1:6645916-6646228:+|nuORF	REV__ENST00000482360.5_1_1:6645916-6646228:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.271728515625	2	496.271627	990.528701	0.57541	0.00028556	1.0151	0.00050374	1.5905	0.0007893	496.27174635584265	47.805	0.60702	47.848	47.662	48.269	0.043324					35	22	2	0	0	0	0.23736	1	10886	10886		37.974	7.3375	1	1747400	+		29080	21496	16806	16807	35846	35846					0.03305794997004341
LYRQYFEEI	9	Unmodified	_LYRQYFEEI_					0	0	0		ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	ENSG00000124160|ENST00000290231|NCOA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.2241821289062	2	630.816596	1259.61864	0.59825	0.00037738	-0.73671	-0.00046473	-0.13847	-8.7349E-05	630.8159977412996	56.97	0.27712	56.951	56.838	57.115	-0.019077					19	9	3	0	0	0	0.14408	1	13704	13704		59.368	42.255	1	189630			29081	3134	16807	16808	35847	35847					-0.0007862018510422786
LYRRGQKD	8	Unmodified	_LYRRGQKD_					0	0	0			REV__nc|ENSG00000206199|A6NFN9-1|ANKUB1	REV__nc|ENSG00000206199|A6NFN9-1|ANKUB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.775390625	2	518.28834	1034.56213	0.44391	0.00023008	-2.9834	-0.0015463	-2.5395	-0.0013162	518.2867841458134	35.991	0.29734	36.073	35.874	36.171	0.082355					13	10	2	0	0	0	0.34218	1	7236	7236		9.3474	0	1	152210	+		29082	19017	16808	16809	35848	35848					0.04622796768899207
LYRSHKLY	8	Unmodified	_LYRSHKLY_					0	0	0			REV__ENSG00000112144|ENST00000676107|CILK1	REV__ENSG00000112144|ENST00000676107|CILK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3032836914062	2	540.303458	1078.59236	0.48251	0.0002607	-0.59405	-0.00032097	-0.11154	-6.0263E-05	540.3026462018761	57.74	1.8775	57.74	57.064	58.941	0					114	66	3	0	0	0	0.38703	1	14013	14013		20.871	0	1	1789400	+		29083	14756	16809	16810	35849	35849					0.05621155434096181
LYRSHKLY	8	Unmodified	_LYRSHKLY_					0	0	0			REV__ENSG00000112144|ENST00000676107|CILK1	REV__ENSG00000112144|ENST00000676107|CILK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3034057617188	2	540.303458	1078.59236	0.52807	0.00028532	-1.0489	-0.00056675	-0.52088	-0.00028143	540.3023337015308	57.852	2.2385	57.835	56.648	58.887	-0.0172					152	81	4	0	0	0	0.32778	1	13993	13993		14.582	0	1	2066000	+		29084	14756	16809	16810	35850	35850					0.05621155434096181
LYRSVSFKL	9	Unmodified	_LYRSVSFKL_					0	0	0		ARHGEF17|p.P1183Lfs*7|1|0.44|ENSG00000110237|chr11:73355626-73355626|C/-|frameshift_variant;ENSG00000110237|ENST00000263674|ARHGEF17	ARHGEF17|p.P1183Lfs*7|1|0.44|ENSG00000110237|chr11:73355626-73355626|C/-|frameshift_variant	ARHGEF17|p.P1183Lfs*7|1|0.44|ENSG00000110237|chr11:73355626-73355626|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.274658203125	2	556.826766	1111.63898	0.31004	0.00017264	-0.69265	-0.00038568	-0.3826	-0.00021304	556.8262404830767	57.632	0.55026	57.632	57.525	58.075	0					27	19	2	0	0	0	0.24848	1	13933	13933		13.906	5.3128	1	265060			29085	54	16810	16811	35851	35851					0.08762595265397977
LYRTKLLPL	9	Unmodified	_LYRTKLLPL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2721557617188	2	558.860609	1115.70667	0.97486	0.00054481	-0.22928	-0.00012814	0.74558	0.00041667	558.8603289526876	50.467	0.4208	50.512	50.318	50.739	0.044891					22	14	2	0	0	0	0.2451	1	11754	11754		10.824	6.0679	1	164320			29086	530	16811	16812	35852	35852					0.15344045196184197
LYRTKLLPL	9	Unmodified	_LYRTKLLPL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.272216796875	2	558.860609	1115.70667	0.91421	0.00051091	-0.19471	-0.00010882	0.7195	0.0004021	558.8604874405875	50.539	0.45898	50.56	50.309	50.768	0.020691					24	16	2	0	0	0	0.25202	1	11764	11764		10.824	8.7642	1	190790			29087	530	16811	16812	35853	35853					0.15344045196184197
LYRTKLLPL	9	Unmodified	_LYRTKLLPL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	558.860609	1115.70667	0.67378	0.00037655	0.38653	0.00021602	1.0603	0.00059256	558.8607104343947	50.571	0.46314	50.571	50.191	50.654	0	0.023078	0.00054202	NaN	10.824	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193800			29088	530	16811	16812							0.15344045196184197
LYRVALLY	8	Unmodified	_LYRVALLY_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ;ENST00000582864.1_1_17:65184426-65184723:-|nuORF	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.79278564453125	2	505.805303	1009.59605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.294	1	53.284	52.784	53.784	-0.0096054								0	0	0	0.35251	1	12566	12566		13.508	0	1				29089	8057	16812	16813	35854	35854					0.0916382520794059
LYRVHGQEVD	10	Unmodified	_LYRVHGQEVD_					0	0	0			REV__ENST00000560634.1_1_15:84858634-84860056:+|nuORF	REV__ENST00000560634.1_1_15:84858634-84860056:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.21917724609375	3	405.875405	1214.60439	-0.14594	-5.9234E-05	-0.32288	-0.00013105	-0.46882	-0.00019028	406.209405535189	25.99	0.71838	25.967	25.691	26.409	-0.022236					40	25	2	0	0	0	0.32051	1	4143	4143		3.8763	0.28927	1	190290	+		29090	22278	16813	16814	35855	35855					0.005667273866038158
LYRVPGGL	8	Unmodified	_LYRVPGGL_					0	0	0			REV__ENST00000483404.5_1_1:234529115-234536620:-|nuORF	REV__ENST00000483404.5_1_1:234529115-234536620:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.76104736328125	2	437.760895	873.507237	-0.15532	-6.7995E-05	-0.13722	-6.0068E-05	-0.29254	-0.00012806	437.7607872451438	61.445	0.69115	61.445	61.254	61.945	0					57	25	3	0	0	0	0.28235	1	15110	15110		38.151	9.6643	1	682850	+		29091	21518	16814	16815	35856	35856					0.0654240996829003
LYRVRAHGVR	10	Unmodified	_LYRVRAHGVR_					0	0	0		ENSG00000061656|ENST00000374273|SPAG4	ENSG00000061656|ENST00000374273|SPAG4	ENSG00000061656|ENST00000374273|SPAG4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.58709716796875	3	409.579146	1225.71561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.75	1	34.825	34.325	35.325	0.075306								0	0	0	0.36252	1	6886	6886		9.544	2.4423	1				29092	759	16815	16816	35857	35857					0.11177831605209576
LYRYFAFPL	9	Unmodified	_LYRYFAFPL_					0	0	0			REV__ENST00000564969.5_1_16:89805773-89806175:-|nuORF	REV__ENST00000564969.5_1_16:89805773-89806175:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8368530273438	2	595.32386	1188.63317	0.58252	0.00034679	-2.3678	-0.0014096	-1.7852	-0.0010628	595.3222891654004	53.177	0.80771	53.234	53.013	53.821	0.056255					62	29	3	0	0	0	0.25526	1	12522	12522		7.9102	1.187	1	545220	+		29093	22351	16816	16817	35858	35858					0.04639496753702588
LYSARSFKF	9	Unmodified	_LYSARSFKF_					0	0	0			REV__ENSG00000119943|ENST00000370575|PYROXD2	REV__ENSG00000119943|ENST00000370575|PYROXD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.803466796875	2	559.803291	1117.59203	0.42053	0.00023541	0.55189	0.00030895	0.97242	0.00054436	559.8035842215334	45.572	0.92551	45.637	45.248	46.174	0.065048					79	33	3	0	0	0	0.088443	1	10150	10150		39.95	0	1	1788600	+		29094	15066	16817	16818	35859	35859					0.03793735714225477
LYSAWATPYT	10	Unmodified	_LYSAWATPYT_					0	0	0			REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF	REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.784912109375	2	586.784764	1171.55498	0.40019	0.00023482	-0.47544	-0.00027898	-0.075249	-4.4155E-05	586.7850823508884	71.506	0.72507	71.506	71.292	72.017	0					45	25	3	0	0	0	0.27059	1	18176	18176		24.021	2.4304	1	906720	+		29095	19556	16818	16819	35860	35860					-0.02393980622196068
LYSAWATPYT	10	Unmodified	_LYSAWATPYT_					0	0	0			REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF	REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3230590820312	2	586.784764	1171.55498	0.28357	0.00016639	-0.23805	-0.00013968	0.045519	2.671E-05	586.7848101288556	71.434	0.81485	71.49	71.269	72.084	0.056572					46	29	2	0	0	0	0.26638	1	18143	18143		30.637	11.011	1	1011300	+		29096	19556	16818	16819	35861	35861					-0.02393980622196068
LYSAWATPYT	10	Unmodified	_LYSAWATPYT_					0	0	0			REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF	REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.78515625	2	586.784764	1171.55498	0.45167	0.00026503	-0.7211	-0.00042313	-0.26943	-0.0001581	586.7848088562415	71.583	0.69406	71.556	71.315	72.009	-0.027267					51	24	3	0	0	0	0.21644	1	18197	18197		30.637	3.0077	1	1104500	+		29097	19556	16818	16819	35862	35862					-0.02393980622196068
LYSAWATPYT	10	Unmodified	_LYSAWATPYT_					0	0	0			REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF	REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3232421875	2	586.784764	1171.55498	0.45167	0.00026503	-0.7211	-0.00042313	-0.26943	-0.0001581	586.7848088562415	71.583	0.69406	71.556	71.315	72.009	-0.027267					51	24	3	0	0	0	0.26638	1	18160	18160		30.637	14.487	1	1104500	+		29098	19556	16818	16819	35863	35863					-0.02393980622196068
LYSCTDWPH	9	Unmodified	_LYSCTDWPH_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENST00000543744.1_1_12:7061038-7061341:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2410278320312	2	561.239667	1120.46478	0.45402	0.00025481	0.33066	0.00018558	0.78468	0.00044039	561.2401823598964	82.786	0.91217	82.786	82.262	83.174	0					74	34	3	0	0	0	0.30623	1	21638	21638		7.9102	0.62092	1	452760			29099	10317	16819	16820	35864	35864					-0.09063353222268233
LYSCTDWPH	9	Unmodified	_LYSCTDWPH_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENST00000543744.1_1_12:7061038-7061341:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2404174804688	2	561.239667	1120.46478	0.46874	0.00026307	0.20255	0.00011368	0.67129	0.00037675	561.2394929672132	86.532	0.57809	86.532	86.279	86.857	0					41	23	2	0	0	0	0.30623	1	22773	22773		7.9102	2.1783	1	231010			29100	10317	16819	16820	35865	35865					-0.09063353222268233
LYSCTDWPH	9	Unmodified	_LYSCTDWPH_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENST00000543744.1_1_12:7061038-7061341:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	561.239667	1120.46478	0.40019	0.0002246	0.97223	0.00054565	1.3724	0.00077026	561.2401707711489	82.76	0.70953	82.74	82.497	83.207	-0.020584	-0.011451	0.00017968	NaN	7.9102	50	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	545150			29101	10317	16819	16820							-0.09063353222268233
LYSDEEVTV	9	Unmodified	_LYSDEEVTV_					0	0	0			REV__ENSG00000023902|ENST00000369124|PLEKHO1	REV__ENSG00000023902|ENST00000369124|PLEKHO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3160400390625	2	527.750587	1053.48662	0.61442	0.00032426	-2.5845	-0.001364	-1.9701	-0.0010397	527.7491899076135	36.093	0.45064	36.093	35.856	36.307	0					25	16	2	0	0	0	0.24913	1	7283	7283		12.532	2.3482	1	305900	+		29102	13475	16820	16821	35866	35866					-0.03798269992716996
LYSDRLSLE	9	Unmodified	_LYSDRLSLE_					0	0	0		LRRC49|p.N600Hfs*5|1|0.06|ENSG00000137821|chr15:71037272-71037273|-/CATATACTTTTTTG|frameshift_variant;nc|ENSG00000137821|Q8IUZ0-3|LRRC49;nc|ENSG00000137821|Q8IUZ0-4|LRRC49;ENSG00000137821|ENST00000260382|LRRC49;nc|ENSG00000137821|Q8IUZ0-2|LRRC49;ENST00000560691.5_1_15:71192806-71200991:+|nuORF;ENST00000560980.5_1_15:71185191-71211425:+|nuORF	LRRC49|p.N600Hfs*5|1|0.06|ENSG00000137821|chr15:71037272-71037273|-/CATATACTTTTTTG|frameshift_variant	LRRC49|p.N600Hfs*5|1|0.06|ENSG00000137821|chr15:71037272-71037273|-/CATATACTTTTTTG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2835693359375	2	548.287671	1094.56079	0.31949	0.00017517	-1.4254	-0.0007815	-1.1059	-0.00060633	548.2860005095899	41.84	0.66433	41.84	41.771	42.435	0					32	25	2	0	0	0	0.23775	1	9161	9161		18.135	0	1	1035800			29103	4082	16821	16822	35867	35867					0.017291178894765835
LYSEGDCTY	9	Unmodified	_LYSEGDCTY_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000464601.5_1_3:182733228-182740387:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8367919921875	2	525.707865	1049.40118	0.17224	9.0547E-05	1.4374	0.00075567	1.6097	0.00084621	525.7084603292914	61.535	0.27656	61.526	61.45	61.727	-0.0094566					15	9	2	0	0	0	0.25417	1	15120	15120		8.5933	2.2392	1	145950			29104	1103	16822	16823	35868	35868					-0.12154758449992187
LYSEVDVHF	9	Unmodified	_LYSEVDVHF_					0	0	0		nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2105712890625	2	554.769114	1107.52368	0.44984	0.00024956	-0.34645	-0.0001922	0.1034	5.7361E-05	554.7690624660728	57.035	0.69654	57.035	56.799	57.495	0					47	25	2	0	0	0	0.05508	1	13680	13680		67.344	45.597	1	1912600			29105	4516	16823	16824	35869	35869					-0.025785536562807465
LYSEVDVHF	9	Unmodified	_LYSEVDVHF_					0	0	0		nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.76904296875	2	554.769114	1107.52368	0.21838	0.00012115	-0.65241	-0.00036194	-0.43403	-0.00024079	554.7687960836959	57.157	1.353	57.138	56.892	58.245	-0.019077					72	49	2	0	0	0	2.2223E-07	1	13770	13770		171.47	127.06	1	1590700			29106	4516	16823	16824	35870	35870					-0.025785536562807465
LYSEVDVHF	9	Unmodified	_LYSEVDVHF_					0	0	0		nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	554.769114	1107.52368	0.34417	0.00019094	-0.31423	-0.00017432	0.029948	1.6614E-05	554.7690858562577	56.936	0.61843	57.014	56.778	57.397	0.078674	-0.048325	9.001E-05	NaN	171.47	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1772600			29107	4516	16823	16824							-0.025785536562807465
LYSFDPETFI	10	Unmodified	_LYSFDPETFI_					0	0	0			REV__nc|ENSG00000104299|Q9NV88-3|INTS9	REV__nc|ENSG00000104299|Q9NV88-3|INTS9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.19775390625	3	411.200895	1230.58086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.269	1	76.238	75.738	76.738	-0.031487								0	0	0	0.33391	1	19621	19621		21.59	1.6033	1		+		29108	14402	16824	16825	35871	35871					-0.02521131170578883
LYSFDPETFI	10	Unmodified	_LYSFDPETFI_					0	0	0			REV__nc|ENSG00000104299|Q9NV88-3|INTS9	REV__nc|ENSG00000104299|Q9NV88-3|INTS9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.19720458984375	3	411.200895	1230.58086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.426	1	76.394	75.894	76.894	-0.031487								0	0	0	0.31515	1	19669	19669		26.021	6.0338	1		+		29109	14402	16824	16825	35872	35872					-0.02521131170578883
LYSFQFKF	8	Unmodified	_LYSFQFKF_					0	0	0			REV__ENST00000553571.5_1_20:1435621-1453436:-|nuORF	REV__ENST00000553571.5_1_20:1435621-1453436:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.800048828125	2	540.28166	1078.54877	0.6817	0.00036831	-2.6917	-0.0014543	-2.01	-0.001086	540.2802961633884	63.962	0.41114	63.962	63.746	64.158	0					22	14	2	0	0	0	0.32778	1	15871	15871		14.582	0	1	203010	+		29110	22227	16825	16826	35873	35873					0.012635459369676028
LYSFSTICY	9	Unmodified	_LYSFSTICY_					0	0	0			REV__ENST00000369248.8_1_10:116623463-116623577:+|nuORF	REV__ENST00000369248.8_1_10:116623463-116623577:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3080444335938	2	548.754618	1095.49468	0.60586	0.00033247	-3.6049	-0.0019782	-2.999	-0.0016457	549.2542291452886	82.688	0.3251	82.667	82.517	82.842	-0.020584					15	12	2	0	0	0	0.21905	1	21560	21560		23.148	3.7094	1	103860	+		29111	20354	16826	16827	35874	35874					-0.04924414276911193
LYSHCNLPD	9	Unmodified	_LYSHCNLPD_					0	0	0			REV__nc|ENSG00000185551|P24468-3|NR2F2	REV__nc|ENSG00000185551|P24468-3|NR2F2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.239501953125	2	531.239667	1060.46478	0.37221	0.00019773	-0.83153	-0.00044174	-0.45933	-0.00024401	531.2393591429088	71.384	0.66155	71.445	71.21	71.872	0.060783					47	23	3	0	0	0	0.25989	1	18154	18154		14.838	0.25658	1	576940	+		29112	18389	16827	16828	35875	35875					-0.06303353222256192
LYSHCNLPD	9	Unmodified	_LYSHCNLPD_					0	0	0			REV__nc|ENSG00000185551|P24468-3|NR2F2	REV__nc|ENSG00000185551|P24468-3|NR2F2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	531.239667	1060.46478	0.37221	0.00019773	-0.83153	-0.00044174	-0.45933	-0.00024401	531.2393591429088	71.384	0.66155	71.445	71.21	71.872	0.060783	0.0039964	-3.16E-05	NaN	14.838	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	576940	+		29113	18389	16827	16828							-0.06303353222256192
LYSHLVDYF	9	Unmodified	_LYSHLVDYF_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7874145507812	2	578.787307	1155.56006	0.26037	0.0001507	-0.15204	-8.8001E-05	0.10833	6.2697E-05	578.7871157246516	64.846	0.59887	64.846	64.591	65.19	0					60	21	4	0	0	0	9.3868E-05	2	16116	16116;16170		141.83	105.78	1	1343600			29114	1319	16828	16829	35876;35877	35876					-0.01149676759587237
LYSHLVDYF	9	Unmodified	_LYSHLVDYF_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.2890014648438	2	578.787307	1155.56006	0.39963	0.0002313	-0.15103	-8.7415E-05	0.2486	0.00014388	578.7870906177006	64.765	0.66476	64.858	64.582	65.247	0.09288					63	24	4	0	0	0	0.00014409	2	16086	16086;16137		133.7	97.658	1	1497800			29115	1319	16828	16829	35878;35879	35878					-0.01149676759587237
LYSHLVDYF	9	Unmodified	_LYSHLVDYF_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.7872924804688	2	578.787307	1155.56006	0.18128	0.00010492	-0.014001	-8.1038E-06	0.16728	9.6818E-05	578.7872160322787	64.892	0.7697	64.881	64.578	65.348	-0.011337					64	27	4	0	0	0	5.2996E-06	2	16165	16114;16165		156.16	120.11	1	1542400			29116	1319	16828	16829	35880;35881	35881					-0.01149676759587237
LYSHRLSEL	9	Unmodified	_LYSHRLSEL_					0	0	0		ENSG00000063180|ENST00000084798|CA11	ENSG00000063180|ENST00000084798|CA11	ENSG00000063180|ENST00000084798|CA11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2913818359375	2	559.303655	1116.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.948	1	61.948	61.448	62.448	0								0	0	0	0.18374	1	15253	15253		26.884	8.7487	1				29117	772	16829	16830	35882	35882					0.03912530363277256
LYSHSRIQL	9	Unmodified	_LYSHSRIQL_					0	0	0			REV__ENST00000478161.5_1_18:3722450-3874706:-|nuORF	REV__ENST00000478161.5_1_18:3722450-3874706:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2911987304688	2	558.811648	1115.60874	0.30604	0.00017102	3.2345	0.0018075	3.5406	0.0019785	558.8127516505585	66.871	0.84152	66.955	66.518	67.36	0.083832					58	29	3	0	0	0	0.2451	1	16647	16647		15.847	1.2655	1	206730	+		29118	17587	16830	16831	35883	35883					0.05556236600182274
LYSIAQPFL	9	Unmodified	_LYSIAQPFL_					0	0	0			REV__ENST00000451139.6_1_3:197687092-197702992:+|nuORF	REV__ENST00000451139.6_1_3:197687092-197702992:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7606811523438	2	526.294768	1050.57498	0.19206	0.00010108	-0.024267	-1.2772E-05	0.16779	8.8307E-05	526.2947270348803	81.564	0.63615	81.633	81.382	82.018	0.068993					60	28	3	0	0	0	0.21389	1	21211	21211		25.399	2.663	1	352690	+		29119	18392	16831	16832	35884	35884					0.051718151084287456
LYSINYLHF	9	Unmodified	_LYSINYLHF_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B;ENSG00000235268|ENST00000450979|KDM4E;ENSG00000107077|ENST00000381309|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000255855|ENST00000545950|KDM4F;ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.S1016Gfs*8|1|0.03|ENSG00000066135|chr1:43704103-43704104|-/GGAAGGAG|frameshift_variant	nc|ENSG00000127663|O94953|KDM4B;ENSG00000107077|ENST00000381309|KDM4C;ENSG00000255855|ENST00000545950|KDM4F;ENSG00000066135|ENST00000372396|KDM4A	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.3036499023438	2	585.303124	1168.5917	0.43866	0.00025675	-0.028999	-1.6973E-05	0.40966	0.00023977	585.3031789954655	71.02	0.70606	70.995	70.773	71.479	-0.024864					46	25	2	0	0	0	0.019896	1	18034	18034		64.236	33.6	1	678000			29120	3333;2109;833;8622	16832	16833	35885	35885					0.014143159943841965
LYSINYLHF	9	Unmodified	_LYSINYLHF_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B;ENSG00000235268|ENST00000450979|KDM4E;ENSG00000107077|ENST00000381309|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000255855|ENST00000545950|KDM4F;ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.S1016Gfs*8|1|0.03|ENSG00000066135|chr1:43704103-43704104|-/GGAAGGAG|frameshift_variant	nc|ENSG00000127663|O94953|KDM4B;ENSG00000107077|ENST00000381309|KDM4C;ENSG00000255855|ENST00000545950|KDM4F;ENSG00000066135|ENST00000372396|KDM4A	nc|ENSG00000127663|O94953|KDM4B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	585.303124	1168.5917	0.34865	0.00020407	-0.044082	-2.5801E-05	0.30457	0.00017827	585.3031543229278	70.961	0.63498	70.961	70.711	71.346	0	-0.023923	-1.5299E-05	NaN	64.236	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397540			29121	3333;2109;833;8622	16832	16833							0.014143159943841965
LYSINYLHF	9	Unmodified	_LYSINYLHF_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B;ENSG00000235268|ENST00000450979|KDM4E;ENSG00000107077|ENST00000381309|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000255855|ENST00000545950|KDM4F;ENSG00000066135|ENST00000372396|KDM4A;KDM4A|p.S1016Gfs*8|1|0.03|ENSG00000066135|chr1:43704103-43704104|-/GGAAGGAG|frameshift_variant	nc|ENSG00000127663|O94953|KDM4B;ENSG00000107077|ENST00000381309|KDM4C;ENSG00000255855|ENST00000545950|KDM4F;ENSG00000066135|ENST00000372396|KDM4A	nc|ENSG00000127663|O94953|KDM4B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	585.303124	1168.5917	0.25785	0.00015092	-0.013884	-8.1261E-06	0.24397	0.0001428	585.303193500277	70.938	0.63483	70.999	70.772	71.407	0.060783	0.013697	2.0051E-05	NaN	64.236	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	587990			29122	3333;2109;833;8622	16832	16833							0.014143159943841965
LYSITMSLT	9	Unmodified	_LYSITMSLT_					0	0	0		nc|ENSG00000243710|Q96MR6-2|CFAP57;ENSG00000243710|ENST00000372492|CFAP57	nc|ENSG00000243710|Q96MR6-2|CFAP57	nc|ENSG00000243710|Q96MR6-2|CFAP57	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7703247070312	2	514.770268	1027.52598	0.4769	0.0002455	0.81092	0.00041744	1.2878	0.00066293	514.7703009959339	87.936	1.1254	87.936	87.643	88.768	0					164	56	4	0	0	0	0.21303	1	23181	23181		21.747	1.293	1	2170300			29123	8559	16833	16834	35886	35886					0.013321587571681448
LYSIWNVAF	9	Unmodified	_LYSIWNVAF_					0	0	0			REV__ENSG00000078098|ENST00000188790|FAP	REV__ENSG00000078098|ENST00000188790|FAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3455810546875	2	556.792392	1111.57023	0.67349	0.000375	2.9605	0.0016484	3.634	0.0020234	557.2954748948443	47.504	0.23166	47.547	47.43	47.662	0.043324					15	8	3	0	0	0	0.25291	1	10811	10811		5.2307	0.47466	1	155100	+		29124	13852	16834	16835	35887	35887					0.01890930965669213
LYSKARAR	8	Unmodified	_LYSKARAR_					0	0	0		ENST00000477432.1_1_10:27443766-27443937:-|nuORF	ENST00000477432.1_1_10:27443766-27443937:-|nuORF	ENST00000477432.1_1_10:27443766-27443937:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2379150390625	2	482.787976	963.561398	-0.13946	-6.7331E-05	-0.044656	-2.1559E-05	-0.18412	-8.889E-05	482.7879582876797	25.205	0.66935	25.173	24.737	25.406	-0.031408					36	22	2	0	0	0	0.34218	1	3931	3931		9.3474	0	1	81432			29125	10956	16835	16836	35888	35888					0.07816002119841414
LYSKIEALL	9	Unmodified	_LYSKIEALL_					0	0	0		ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3157348632812	2	525.3157	1048.61685	0.58458	0.00030709	-0.25585	-0.0001344	0.32873	0.00017269	525.3154919511267	62.411	0.66084	62.411	62.115	62.776	0					54	24	3	0	0	0	0.0023895	1	15385	15385		107.1	54.831	1	743300			29126	2846	16836	16837	35889	35889					0.09448370796940253
LYSKIEALL	9	Unmodified	_LYSKIEALL_					0	0	0		ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3159790039062	2	525.3157	1048.61685	0.51399	0.00027001	-0.16291	-8.5578E-05	0.35108	0.00018443	525.3155404531011	62.308	0.70776	62.405	62.03	62.738	0.096985					56	25	3	0	0	0	0.0013924	1	15359	15359		117.76	62.987	1	741040			29127	2846	16836	16837	35890	35890					0.09448370796940253
LYSKIEALL	9	Unmodified	_LYSKIEALL_					0	0	0		ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.31640625	2	525.3157	1048.61685	0.57857	0.00030393	-0.21002	-0.00011033	0.36855	0.00019361	525.3155720923677	62.447	0.5331	62.439	62.142	62.675	-0.0085526					48	19	3	0	0	0	0.015027	1	15372	15372		71.708	19.44	1	623610			29128	2846	16836	16837	35891	35891					0.09448370796940253
LYSKSIIVR	9	Unmodified	_LYSKSIIVR_					0	0	0			REV__nc|ENSG00000138161|Q86UP6-2|CUZD1	REV__nc|ENSG00000138161|Q86UP6-2|CUZD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8145141601562	2	539.834591	1077.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.746	1	85.737	85.237	86.237	-0.0090027								0	0	0	0.2362	1	22521	22521		10.824	1.4765	1		+		29129	15907	16837	16838	35892	35892					0.11890881782437646
LYSLAHSYL	9	Unmodified	_LYSLAHSYL_					0	0	0		ENSG00000176046|ENST00000324873|NUPR1;nc|ENSG00000176046|O60356-2|NUPR1	ENSG00000176046|ENST00000324873|NUPR1	ENSG00000176046|ENST00000324873|NUPR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7822265625	2	533.782025	1065.5495	0.76807	0.00040998	-0.21805	-0.00011639	0.55002	0.00029359	533.7819607633268	54.389	1.7713	54.389	54.136	55.907	0					116	64	4	0	0	0	4.3382E-05	3	12898	12898;12953;13022		149.99	53.71	1	7404600			29130	6899	16838	16839	35893;35894;35895	35893					0.01934340586012695
LYSLAHSYL	9	Unmodified	_LYSLAHSYL_					0	0	0		ENSG00000176046|ENST00000324873|NUPR1;nc|ENSG00000176046|O60356-2|NUPR1	ENSG00000176046|ENST00000324873|NUPR1	ENSG00000176046|ENST00000324873|NUPR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7823486328125	2	533.782025	1065.5495	0.59082	0.00031537	-0.034383	-1.8353E-05	0.55644	0.00029702	533.7820601022737	54.333	1.2991	54.396	54.115	55.415	0.063202					104	48	4	0	0	0	4.3382E-05	4	12927	12864;12879;12927;13079		149.99	47.43	1	7039500			29131	6899	16838	16839	35896;35897;35898;35899	35898					0.01934340586012695
LYSLAHSYL	9	Unmodified	_LYSLAHSYL_					0	0	0		ENSG00000176046|ENST00000324873|NUPR1;nc|ENSG00000176046|O60356-2|NUPR1	ENSG00000176046|ENST00000324873|NUPR1	ENSG00000176046|ENST00000324873|NUPR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7822875976562	2	533.782025	1065.5495	0.74974	0.0004002	-0.195	-0.00010409	0.55474	0.00029611	533.7819954952442	54.645	1.4676	54.629	54.31	55.777	-0.015923					121	53	4	0	0	0	4.3382E-05	3	13005	12941;13005;13049		149.99	41.998	1	7143700			29132	6899	16838	16839	35900;35901;35902	35901					0.01934340586012695
LYSLALKCLIS	11	Unmodified	_LYSLALKCLIS_					0	0	0		nc|ENSG00000080709|Q9H2S1|KCNN2;ENSG00000080709|ENST00000673685|KCNN2	nc|ENSG00000080709|Q9H2S1|KCNN2	nc|ENSG00000080709|Q9H2S1|KCNN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.556884765625	3	408.573787	1222.69953	0.19217	7.8517E-05	1.4821	0.00060553	1.6742	0.00068404	408.57448974386944	21.519	0.52691	21.419	21.13	21.657	-0.10034					41	18	3	0	0	0	0.33238	1	2934	2934		1.3296	0.55311	1	50608			29133	1164	16839	16840	35903	35903					0.09708944533440445
LYSLAQVLF	9	Unmodified	_LYSLAQVLF_					0	0	0			REV__nc|ENSG00000275591|Q6UX68-3|XKR5	REV__nc|ENSG00000275591|Q6UX68-3|XKR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.76904296875	2	527.302593	1052.59063	0.72011	0.00037972	-0.15724	-8.2915E-05	0.56287	0.0002968	527.8044159248399	85.077	0.47057	85.077	84.946	85.417	0					22	17	2	0	0	0	0.20167	1	22295	22295		29.082	3.6823	1	145940	+		29134	19332	16840	16841	35904	35904					0.06644101625465737
LYSLINEAF	9	Unmodified	_LYSLINEAF_					0	0	0		ENSG00000113790|ENST00000231887|EHHADH;nc|ENSG00000113790|Q08426-2|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.282470703125	2	535.281857	1068.54916	0.80691	0.00043192	0.40053	0.0002144	1.2074	0.00064632	535.7831966814902	78.44	1.5173	78.44	77.771	79.289	0					127	59	3	0	0	0	0.20881	1	20338	20338		27.629	6.7576	1	754140			29135	2531	16841	16842	35905	35905					0.01762920866121931
LYSLKVLML	9	Unmodified	_LYSLKVLML_					0	0	0		ENST00000550851.5_1_12:71833860-71960711:+|nuORF;nc|ENSG00000139292|O75473-2|LGR5;ENSG00000139292|ENST00000266674|LGR5;nc|ENSG00000139292|O75473-3|LGR5	ENST00000550851.5_1_12:71833860-71960711:+|nuORF	ENST00000550851.5_1_12:71833860-71960711:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.334716796875	2	540.330296	1078.64604	0.50598	0.0002734	-0.17381	-9.3917E-05	0.33217	0.00017948	540.3301155767172	90.725	0.7277	90.725	90.342	91.07	0					143	55	3	0	0	0	0.32733	1	24007	24007		4.756	4.756	1	692200			29136	4226	16842	16843	35906	35906					0.1098619182157563
LYSLKVLML	9	Unmodified	_LYSLKVLML_					0	0	0		ENST00000550851.5_1_12:71833860-71960711:+|nuORF;nc|ENSG00000139292|O75473-2|LGR5;ENSG00000139292|ENST00000266674|LGR5;nc|ENSG00000139292|O75473-3|LGR5	ENST00000550851.5_1_12:71833860-71960711:+|nuORF	ENST00000550851.5_1_12:71833860-71960711:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3301391601562	2	540.330296	1078.64604	0.38978	0.00021061	-0.13774	-7.4424E-05	0.25205	0.00013619	540.330084290818	76.449	1.7327	76.502	75.862	77.595	0.053413					184	61	4	0	0	0	0.32733	1	19689	19689		4.756	0	1	2242700			29137	4226	16842	16843	35907	35907					0.1098619182157563
LYSLKVLML	9	Unmodified	_LYSLKVLML_					0	0	0		ENST00000550851.5_1_12:71833860-71960711:+|nuORF;nc|ENSG00000139292|O75473-2|LGR5;ENSG00000139292|ENST00000266674|LGR5;nc|ENSG00000139292|O75473-3|LGR5	ENST00000550851.5_1_12:71833860-71960711:+|nuORF	ENST00000550851.5_1_12:71833860-71960711:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	540.330296	1078.64604	0.50598	0.0002734	-0.17381	-9.3917E-05	0.33217	0.00017948	540.3301155767172	90.725	0.7277	90.725	90.342	91.07	0	0.01284	7.5877E-05	NaN	4.756	143	55	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	692200			29138	4226	16842	16843							0.1098619182157563
LYSLKVLML	9	Unmodified	_LYSLKVLML_					0	0	0		ENST00000550851.5_1_12:71833860-71960711:+|nuORF;nc|ENSG00000139292|O75473-2|LGR5;ENSG00000139292|ENST00000266674|LGR5;nc|ENSG00000139292|O75473-3|LGR5	ENST00000550851.5_1_12:71833860-71960711:+|nuORF	ENST00000550851.5_1_12:71833860-71960711:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	540.330296	1078.64604	0.50871	0.00027487	-0.22281	-0.00012039	0.2859	0.00015448	540.3300599341434	90.604	1.063	90.695	89.954	91.017	0.090668	-0.016817	2.2925E-05	NaN	4.756	177	82	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	652310			29139	4226	16842	16843							0.1098619182157563
LYSLKVLML	9	Unmodified	_LYSLKVLML_					0	0	0		ENST00000550851.5_1_12:71833860-71960711:+|nuORF;nc|ENSG00000139292|O75473-2|LGR5;ENSG00000139292|ENST00000266674|LGR5;nc|ENSG00000139292|O75473-3|LGR5	ENST00000550851.5_1_12:71833860-71960711:+|nuORF	ENST00000550851.5_1_12:71833860-71960711:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	540.330296	1078.64604	0.67553	0.00036501	-0.37196	-0.00020098	0.30357	0.00016403	540.3299990256886	90.715	1.278	90.716	89.786	91.064	0.0003891	0.0039774	-0.00013825	NaN	4.756	202	100	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	560340			29140	4226	16842	16843							0.1098619182157563
LYSLLVWSAA	10	Unmodified	_LYSLLVWSAA_					0	0	0			REV__ENST00000220244.7_1_15:81241369-81241618:+|nuORF	REV__ENST00000220244.7_1_15:81241369-81241618:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.8141479492188	2	561.813325	1121.6121	0.15307	8.5996E-05	1.2917	0.00072571	1.4448	0.00081171	561.814093529883	64.958	0.70129	64.958	64.591	65.293	0					79	25	4	0	0	0	0.21644	1	16216	16216		30.637	0	1	2027700	+		29141	19423	16843	16844	35908	35908					0.056154866542101445
LYSLSQPLASL	11	Unmodified	_LYSLSQPLASL_					0	0	0		nc|ENSG00000162367|P17542-2|TAL1;ENSG00000162367|ENST00000691006|TAL1	nc|ENSG00000162367|P17542-2|TAL1	nc|ENSG00000162367|P17542-2|TAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.2789916992188	2	596.334621	1190.65469	0.7264	0.00043318	0.59977	0.00035766	1.3262	0.00079084	596.3348770758316	47.819	0.49683	47.819	47.38	47.877	0					29	17	2	0	0	0	0.3239	1	10800	10800		17.113	0.96379	1	654090			29142	5561	16844	16845	35909	35909					0.06698836991745338
LYSLSQPLASL	11	Unmodified	_LYSLSQPLASL_					0	0	0		nc|ENSG00000162367|P17542-2|TAL1;ENSG00000162367|ENST00000691006|TAL1	nc|ENSG00000162367|P17542-2|TAL1	nc|ENSG00000162367|P17542-2|TAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.279052734375	2	596.334621	1190.65469	0.746	0.00044486	0.59687	0.00035594	1.3429	0.0008008	596.8363498510716	47.689	0.49217	47.737	47.374	47.866	0.04752					38	17	3	0	0	0	0.32736	1	10753	10753		12.241	3.6474	1	537100			29143	5561	16844	16845	35910	35910					0.06698836991745338
LYSLSQPLASL	11	Unmodified	_LYSLSQPLASL_					0	0	0		nc|ENSG00000162367|P17542-2|TAL1;ENSG00000162367|ENST00000691006|TAL1	nc|ENSG00000162367|P17542-2|TAL1	nc|ENSG00000162367|P17542-2|TAL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	596.334621	1190.65469	0.72702	0.00043354	0.39693	0.0002367	1.1239	0.00067024	596.3347995299503	47.691	0.44843	47.734	47.349	47.797	0.043324	-0.029273	-0.00016803	NaN	17.113	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	486450			29144	5561	16844	16845							0.06698836991745338
LYSPIPTPEVG	11	Unmodified	_LYSPIPTPEVG_					0	0	0			REV__SECISBP2L|p.V789Sfs*2|1|0.21|ENSG00000138593|chr15:48999871-48999872|-/T|frameshift_variant	REV__SECISBP2L|p.V789Sfs*2|1|0.21|ENSG00000138593|chr15:48999871-48999872|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8134765625	2	586.813522	1171.61249	0.47095	0.00027636	-0.41837	-0.00024551	0.052577	3.0853E-05	586.813305875984	21.467	0.91954	21.367	20.763	21.682	-0.10034					80	32	4	0	0	0	0.44523	1	2793	2793		5.2969	5.2969	1	364940	+		29145	15933	16845	16846	35911	35911					0.03354861583375168
LYSPKRLF	8	Unmodified	_LYSPKRLF_					0	0	0		ENSG00000149380|ENST00000331597|P4HA3;nc|ENSG00000149380|Q7Z4N8-3|P4HA3;nc|ENSG00000149380|Q7Z4N8-2|P4HA3;ENST00000525968.1_1_11:73984627-74015361:-|nuORF	ENSG00000149380|ENST00000331597|P4HA3	ENSG00000149380|ENST00000331597|P4HA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.3034057617188	2	512.302927	1022.5913	0.064469	3.3028E-05	0.67765	0.00034716	0.74211	0.00038019	512.3032015646336	80.774	0.51623	80.839	80.656	81.172	0.065094					41	22	3	0	0	0	0.43727	1	21028	21028		10.183	1.5901	1	213640			29146	4862	16846	16847	35912	35912					0.08090941065188417
LYSPLAEQF	9	Unmodified	_LYSPLAEQF_					0	0	0		ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2742309570312	2	534.274032	1066.53351	0.354	0.00018913	-0.73316	-0.00039171	-0.37916	-0.00020258	534.2739614011874	69.761	0.57106	69.761	69.428	69.999	0					50	20	3	0	0	0	0.00012108	1	17662	17662		137.42	78.745	1	1060200			29147	1811	16847	16848	35913	35913					0.0029063434908493946
LYSPLAEQF	9	Unmodified	_LYSPLAEQF_					0	0	0		ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2741088867188	2	534.274032	1066.53351	0.39728	0.00021226	-0.82489	-0.00044072	-0.42761	-0.00022846	534.2739166076522	69.744	0.6147	69.722	69.435	70.049	-0.022087					53	22	3	0	0	0	0.0019475	1	17669	17669		110.67	51.996	1	1083200			29148	1811	16847	16848	35914	35914					0.0029063434908493946
LYSPLDQKF	9	Unmodified	_LYSPLDQKF_					0	0	0			REV__ENSG00000162409|ENST00000371244|PRKAA2	REV__ENSG00000162409|ENST00000371244|PRKAA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7962036132812	2	555.795132	1109.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.16	1	114.14	113.64	114.64	-0.019096								0	0	0	0.25858	1	29657	29657		3.5965	0	1		+		29149	16980	16848	16849	35915	35915					0.0253060975749122
LYSPLDQKF	9	Unmodified	_LYSPLDQKF_					0	0	0			REV__ENSG00000162409|ENST00000371244|PRKAA2	REV__ENSG00000162409|ENST00000371244|PRKAA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.353515625	2	555.795132	1109.57571	0.10198	5.6679E-05	1.665	0.0009254	1.767	0.00098208	555.7965180481132	112.16	0.073517	112.14	112.09	112.16	-0.015625					11	9	2	0	0	0	0.25938	1	29171	29171		4.3292	0	1	27637	+		29150	16980	16848	16849	35916	35916					0.0253060975749122
LYSQLVEAL	9	Unmodified	_LYSQLVEAL_					0	0	0		nc|ENSG00000120498|Q8IYF3-2|TEX11;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3|TEX11	nc|ENSG00000120498|Q8IYF3-2|TEX11	nc|ENSG00000120498|Q8IYF3-2|TEX11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3173217773438	2	518.289682	1034.56481	0.57436	0.00029768	0.6356	0.00032942	1.21	0.00062711	518.290035665838	77.111	1.4676	77.111	76.754	78.221	0					145	54	4	0	0	0	0.042824	1	19878	19878		66.457	22.598	1	1846600			29151	2946	16849	16850	35917	35917					0.04891207383184337
LYSQLVEAL	9	Unmodified	_LYSQLVEAL_					0	0	0		nc|ENSG00000120498|Q8IYF3-2|TEX11;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3|TEX11	nc|ENSG00000120498|Q8IYF3-2|TEX11	nc|ENSG00000120498|Q8IYF3-2|TEX11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3171997070312	2	518.289682	1034.56481	0.42949	0.0002226	0.523	0.00027106	0.95249	0.00049367	518.2899493620064	76.981	2.1788	77.037	76.347	78.525	0.055412					139	62	4	0	0	0	0.0069488	1	19864	19864		96.111	17.962	1	1976500			29152	2946	16849	16850	35918	35918					0.04891207383184337
LYSQLVEAL	9	Unmodified	_LYSQLVEAL_					0	0	0		nc|ENSG00000120498|Q8IYF3-2|TEX11;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3|TEX11	nc|ENSG00000120498|Q8IYF3-2|TEX11	nc|ENSG00000120498|Q8IYF3-2|TEX11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3173217773438	2	518.289682	1034.56481	0.63337	0.00032827	0.54739	0.00028371	1.1808	0.00061198	518.289961569614	77.099	1.3377	77.068	76.754	78.092	-0.031334					120	48	4	0	0	0	0.016005	1	19878	19878		85.642	26.963	1	1812100			29153	2946	16849	16850	35919	35919					0.04891207383184337
LYSQSHSLY	9	Unmodified	_LYSQSHSLY_					0	0	0			REV__nc|ENSG00000119596|P49750-3|YLPM1	REV__nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.28515625	2	549.266739	1096.51892	0.64509	0.00035433	2.7982	0.0015369	3.4433	0.0018913	549.2680690349724	44.884	0.35924	44.884	44.71	45.069	0					21	12	3	0	0	0	0.21303	1	10013	10013		21.747	2.4897	1	214870	+		29154	15047	16850	16851	35920	35920					-0.02547437799034924
LYSRDRAGF	9	Unmodified	_LYSRDRAGF_					0	0	0			REV__GRAMD1C|p.S260Ifs*10|1|0.06|ENSG00000178075|chr3:113904260-113904261|-/ATAAGGTCACC|frameshift_variant	REV__GRAMD1C|p.S260Ifs*10|1|0.06|ENSG00000178075|chr3:113904260-113904261|-/ATAAGGTCACC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.802490234375	2	542.780348	1083.54614	0.68974	0.00037438	3.9349	0.0021358	4.6247	0.0025102	543.2837834609577	44.578	0.248	44.578	44.436	44.684	0					10	8	2	0	0	0	0.24311	1	9868	9868		16.942	0	1	193210	+		29155	18015	16851	16852	35921	35921					0.0077109053199819755
LYSRDRAGF	9	Unmodified	_LYSRDRAGF_					0	0	0			REV__GRAMD1C|p.S260Ifs*10|1|0.06|ENSG00000178075|chr3:113904260-113904261|-/ATAAGGTCACC|frameshift_variant	REV__GRAMD1C|p.S260Ifs*10|1|0.06|ENSG00000178075|chr3:113904260-113904261|-/ATAAGGTCACC|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	542.780348	1083.54614	0.7534	0.00040893	0.87492	0.00047489	1.6283	0.00088382	543.2816984600215	44.675	0.16526	44.75	44.615	44.78	0.075047	0.086275	-0.0029924	NaN	16.942	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64231	+		29156	18015	16851	16852							0.0077109053199819755
LYSRLREYLL	10	Unmodified	_LYSRLREYLL_					0	0	0		ENSG00000079313|ENST00000170168|REXO1	ENSG00000079313|ENST00000170168|REXO1	ENSG00000079313|ENST00000170168|REXO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.5907897949219	3	442.590717	1324.75032	-0.1123	-4.9703E-05	0.048588	2.1504E-05	-0.063712	-2.8198E-05	442.5907635251373	45.996	1.232	46.056	45.647	46.879	0.059834					125	44	5	0	0	0	0.30656	1	10326	10326		19.626	0.48201	1	10256000			29157	1130	16852	16853	35922	35922					0.10093609902673961
LYSRLSFSKG	10	Unmodified	_LYSRLSFSKG_					0	0	0			REV__nc|ENSG00000085644|O14771-2|ZNF213	REV__nc|ENSG00000085644|O14771-2|ZNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.7969360351562	2	579.319306	1156.62406	0.51399	0.00029777	2.4483	0.0014183	2.9622	0.0017161	579.3206546655717	64.237	0.34467	64.237	64.053	64.398	0					17	12	2	0	0	0	0.31581	1	15982	15982		11.495	2.9014	1	160610	+		29158	13966	16853	16854	35923	35923					0.05201103397371298
LYSRLSFSKG	10	Unmodified	_LYSRLSFSKG_					0	0	0			REV__nc|ENSG00000085644|O14771-2|ZNF213	REV__nc|ENSG00000085644|O14771-2|ZNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.7969970703125	2	579.319306	1156.62406	0.47296	0.00027399	1.5171	0.00087889	1.9901	0.0011529	579.3200432760386	64.356	0.86752	64.449	64.012	64.88	0.09288					37	31	2	0	0	0	0.31237	1	15937	15937		16.149	3.1066	1	186120	+		29159	13966	16853	16854	35924	35924					0.05201103397371298
LYSRLVYGY	9	Unmodified	_LYSRLVYGY_					0	0	0			REV__nc|ENSG00000082074|O15117|FYB1	REV__nc|ENSG00000082074|O15117|FYB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.280029296875	2	567.303124	1132.5917	0.30377	0.00017233	0.54693	0.00031027	0.8507	0.00048261	567.3035168657286	53.122	0.3285	53.112	52.889	53.218	-0.0096054					16	11	2	0	0	0	0.24311	1	12517	12517		7.2892	0	1	145500	+		29160	13915	16854	16855	35925	35925					0.030703159943641367
LYSRQLYVL	9	Unmodified	_LYSRQLYVL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1;ENSG00000182179|ENST00000333486|UBA7	ENSG00000130985|ENST00000335972|UBA1;ENSG00000182179|ENST00000333486|UBA7	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.832275390625	2	577.832049	1153.64954	0.72124	0.00041676	-0.76251	-0.0004406	-0.041263	-2.3843E-05	577.8316053127832	55.803	0.67297	55.803	55.539	56.212	0					48	23	3	0	0	0	0.088443	1	13357	13357		39.95	12.321	1	1583200			29161	3533;7276	16855	16856	35926	35926					0.07886577919794036
LYSRQLYVL	9	Unmodified	_LYSRQLYVL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1;ENSG00000182179|ENST00000333486|UBA7	ENSG00000130985|ENST00000335972|UBA1;ENSG00000182179|ENST00000333486|UBA7	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.832275390625	2	577.832049	1153.64954	0.71803	0.0004149	-0.57326	-0.00033125	0.14478	8.3656E-05	577.8316632479634	55.917	0.54338	55.897	55.696	56.239	-0.019081					47	19	3	0	0	0	0.047483	2	13388	13388;13437		53.833	19.431	1	1588900			29162	3533;7276	16855	16856	35927;35928	35927					0.07886577919794036
LYSRQLYVL	9	Unmodified	_LYSRQLYVL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1;ENSG00000182179|ENST00000333486|UBA7	ENSG00000130985|ENST00000335972|UBA1;ENSG00000182179|ENST00000333486|UBA7	ENSG00000130985|ENST00000335972|UBA1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	577.832049	1153.64954	0.68161	0.00039386	-0.75522	-0.00043639	-0.073614	-4.2537E-05	577.8315658209948	55.784	0.64754	55.855	55.565	56.213	0.070885	0.0031364	-5.4607E-05	NaN	53.833	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1670200			29163	3533;7276	16855	16856							0.07886577919794036
LYSRVQATF	9	Unmodified	_LYSRVQATF_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7938842773438	2	542.792924	1083.57129	0.44641	0.00024231	0.73137	0.00039698	1.1778	0.00063929	542.7937217574622	43.171	1.4645	43.171	42.355	43.819	0					123	53	4	0	0	0	0.0031966	2	9479	9435;9479		100.71	60.759	1	2099700			29164	1825	16856	16857	35929;35930	35930					0.032851453345756454
LYSRVQATF	9	Unmodified	_LYSRVQATF_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7938842773438	2	542.792924	1083.57129	0.52757	0.00028636	0.34161	0.00018542	0.86917	0.00047178	542.7935361450009	42.89	1.2795	42.975	42.211	43.49	0.085197					119	46	4	0	0	0	0.0019382	1	9358	9358		110.79	54.616	1	2013200			29165	1825	16856	16857	35931	35931					0.032851453345756454
LYSRVQATF	9	Unmodified	_LYSRVQATF_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.7941284179688	2	542.792924	1083.57129	0.37716	0.00020472	0.75804	0.00041146	1.1352	0.00061618	542.793861508524	42.839	1.013	42.93	42.292	43.305	0.091362					107	36	4	0	0	0	0.0019382	1	9335	9335		110.79	63.044	1	1966100			29166	1825	16856	16857	35932	35932					0.032851453345756454
LYSSEQLLI	9	Unmodified	_LYSSEQLLI_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2952880859375	2	533.294965	1064.57538	0.34337	0.00018312	0.33798	0.00018024	0.68135	0.00036336	533.2950614583965	69.663	0.78869	69.663	69.369	70.157	0					82	28	4	0	0	0	0.0098873	2	17596	17596;17643		79.596	35.738	1	1977600			29167	6253	16857	16858	35933;35934	35933					0.04567190037619184
LYSSEQLLI	9	Unmodified	_LYSSEQLLI_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2952270507812	2	533.294965	1064.57538	0.20166	0.00010754	0.5292	0.00028222	0.73086	0.00038977	533.2951522266728	69.627	0.82072	69.693	69.34	70.16	0.066048					81	28	4	0	0	0	0.0098873	1	17612	17612		79.596	35.738	1	1605400			29168	6253	16857	16858	35935	35935					0.04567190037619184
LYSSEQLLI	9	Unmodified	_LYSSEQLLI_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2952880859375	2	533.294965	1064.57538	0.38933	0.00020763	0.49444	0.00026368	0.88377	0.00047131	533.2950112685763	69.676	0.86508	69.654	69.352	70.217	-0.022079					99	31	5	0	0	0	0.0046246	2	17636	17636;17689		89.401	37.132	1	1780500			29169	6253	16857	16858	35936;35937	35936					0.04567190037619184
LYSSKLYRF	9	Unmodified	_LYSSKLYRF_					0	0	0		ENST00000474988.5_1_6:36410818-36454949:+|nuORF;nc|ENSG00000112078|Q7Z5Y7-2|KCTD20;nc|ENSG00000112078|Q7Z5Y7-3|KCTD20;ENSG00000112078|ENST00000373731|KCTD20	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8247680664062	2	588.824224	1175.63389	0.34166	0.00020118	0.93142	0.00054844	1.2731	0.00074962	588.8246605597366	43.653	0.40482	43.653	43.414	43.819	0					47	14	4	0	0	0	0.018737	1	9594	9594		86.332	57.25	1	1108000			29170	2409	16858	16859	35938	35938					0.0531029140274768
LYSSKLYRF	9	Unmodified	_LYSSKLYRF_					0	0	0		ENST00000474988.5_1_6:36410818-36454949:+|nuORF;nc|ENSG00000112078|Q7Z5Y7-2|KCTD20;nc|ENSG00000112078|Q7Z5Y7-3|KCTD20;ENSG00000112078|ENST00000373731|KCTD20	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.8248901367188	2	588.824224	1175.63389	0.50729	0.00029871	0.36605	0.00021554	0.87335	0.00051425	588.8244079957191	43.213	0.54482	43.29	43.023	43.567	0.077515					48	19	3	0	0	0	0.0032746	1	9466	9466		100.09	69.454	1	1204700			29171	2409	16858	16859	35939	35939					0.0531029140274768
LYSSKLYRF	9	Unmodified	_LYSSKLYRF_					0	0	0		ENST00000474988.5_1_6:36410818-36454949:+|nuORF;nc|ENSG00000112078|Q7Z5Y7-2|KCTD20;nc|ENSG00000112078|Q7Z5Y7-3|KCTD20;ENSG00000112078|ENST00000373731|KCTD20	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.8251953125	2	588.824224	1175.63389	0.3192	0.00018795	0.78491	0.00046217	1.1041	0.00065013	588.8246210040635	43.185	0.62744	43.269	42.948	43.576	0.083996					59	22	4	0	0	0	0.0073901	2	9438	9438;9506		83.429	45.455	1	959250			29172	2409	16858	16859	35940;35941	35940					0.0531029140274768
LYSSKNLRQ	9	Unmodified	_LYSSKNLRQ_					0	0	0		nc|ENSG00000058091|O94921-3|CDK14;nc|ENSG00000058091|O94921-2|CDK14;ENSG00000058091|ENST00000380050|CDK14	nc|ENSG00000058091|O94921-3|CDK14	nc|ENSG00000058091|O94921-3|CDK14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2955322265625	2	554.809105	1107.60366	0.1346	7.468E-05	-1.6219	-0.00089984	-1.4873	-0.00082516	554.8087822868089	46.287	0.37318	46.287	46.029	46.402	0					22	13	2	0	0	0	0.19747	1	10375	10375		24.021	1.2843	1	329970			29173	731	16859	16860	35942	35942					0.0541593273756007
LYSSPTLYCRD	11	Unmodified	_LYSSPTLYCRD_					0	0	0			REV__ENST00000401087.3_3_1:149089877-149094694:-|nuORF	REV__ENST00000401087.3_3_1:149089877-149094694:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.57379150390625	3	439.876306	1316.60709	0.15083	6.6345E-05	3.2263	0.0014192	3.3771	0.0014855	440.2123299732474	32.362	0.27233	32.417	32.306	32.579	0.054371					12	9	2	0	0	0	0.32719	1	6134	6134		10.315	1.8709	1	56337	+		29174	20708	16860	16861	35943	35943					-0.03855185270754191
LYSSVKDQFA	10	Unmodified	_LYSSVKDQFA_					0	0	0			REV__nc|ENSG00000132031|O15232-2|MATN3	REV__nc|ENSG00000132031|O15232-2|MATN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3087768554688	2	579.295496	1156.57644	0.4652	0.00026949	-0.37963	-0.00021992	0.085576	4.9574E-05	579.295476973014	50.241	0.84155	50.241	49.976	50.818	0					50	30	3	0	0	0	0.34795	1	11791	11791		13.042	0	1	535730	+		29175	15550	16861	16862	35944	35944					0.004414044065242706
LYSSVKDQFA	10	Unmodified	_LYSSVKDQFA_					0	0	0			REV__nc|ENSG00000132031|O15232-2|MATN3	REV__nc|ENSG00000132031|O15232-2|MATN3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.3088989257812	2	579.295496	1156.57644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.747	1	50.794	50.294	51.294	0.046574								0	0	0	0.34209	1	11790	11790		18.146	0	1		+		29176	15550	16861	16862	35945	35945					0.004414044065242706
LYSSVKDQFA	10	Unmodified	_LYSSVKDQFA_					0	0	0			REV__nc|ENSG00000132031|O15232-2|MATN3	REV__nc|ENSG00000132031|O15232-2|MATN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.3089599609375	2	579.295496	1156.57644	0.83742	0.00048511	-0.53921	-0.00031236	0.29821	0.00017275	579.2953875277254	50.257	0.83395	50.277	50.038	50.872	0.020691					41	30	2	0	0	0	0.27059	2	11730	11730;11782		24.021	0	1	480540	+		29177	15550	16861	16862	35946;35947	35946					0.004414044065242706
LYSTDFIVF	9	Unmodified	_LYSTDFIVF_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.S1164Ffs*57|1|0.23|ENSG00000188994|chr6:87257118-87257119|-/T|frameshift_variant;ZNF292|p.E1663Dfs*7|1|0.08|ENSG00000188994|chr6:87258617-87258618|-/TGGC|frameshift_variant;ZNF292|p.E1663Wfs*12|1|0.12|ENSG00000188994|chr6:87258615-87258616|-/TG|frameshift_variant	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.2855224609375	2	552.784233	1103.55391	0.49732	0.00027491	0.11056	6.1115E-05	0.60788	0.00033603	552.7841980627618	88.413	0.64914	88.413	88.119	88.768	0					76	33	3	0	0	0	0.072844	1	23362	23362		44.407	7.9409	1	208770			29178	7792	16862	16863	35948	35948					0.006278050089122189
LYSTDFIVF	9	Unmodified	_LYSTDFIVF_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292;ZNF292|p.S1164Ffs*57|1|0.23|ENSG00000188994|chr6:87257118-87257119|-/T|frameshift_variant;ZNF292|p.E1663Dfs*7|1|0.08|ENSG00000188994|chr6:87258617-87258618|-/TGGC|frameshift_variant;ZNF292|p.E1663Wfs*12|1|0.12|ENSG00000188994|chr6:87258615-87258616|-/TG|frameshift_variant	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3384399414062	2	552.784233	1103.55391	0.44908	0.00024824	0.019433	1.0742E-05	0.46851	0.00025898	552.7841122985685	88.325	0.68278	88.414	88.107	88.79	0.089195					61	30	3	0	0	0	0.12846	1	23283	23283		36.044	7.871	1	282080			29179	7792	16862	16863	35949	35949					0.006278050089122189
LYSTFGYTL	9	Unmodified	_LYSTFGYTL_					0	0	0		nc|ENSG00000103642|P83111-2|LACTB;ENSG00000103642|ENST00000261893|LACTB	nc|ENSG00000103642|P83111-2|LACTB	nc|ENSG00000103642|P83111-2|LACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7685546875	2	532.768583	1063.52261	0.38725	0.00020631	-0.13059	-6.9573E-05	0.25666	0.00013674	532.7683861196407	72.768	1.0896	72.822	72.382	73.471	0.053841					84	39	3	0	0	0	0.25314	1	18675	18675		15.847	3.3156	1	988420			29180	1847	16863	16864	35950	35950					-0.006607680251818238
LYSTFQKP	8	Unmodified	_LYSTFQKP_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8021240234375	2	492.263468	982.512382	0.44538	0.00021925	-1.5239	-0.00075017	-1.0785	-0.00053093	492.2625172473184	82.461	0.62139	82.44	82.196	82.818	-0.020584					45	24	3	0	0	0	0.3366	1	21613	21613		18.135	5.6034	1	232350	+		29181	17431	16864	16865	35951	35951					0.02042669040235978
LYSTIRPYL	9	Unmodified	_LYSTIRPYL_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENST00000479481.5_1_10:99131673-99132940:-|nuORF	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.318603515625	2	563.318774	1124.623	0.59007	0.0003324	-1.0574	-0.00059568	-0.46737	-0.00026328	563.3182562868946	55.506	0.61865	55.577	55.371	55.989	0.070885					33	22	2	0	0	0	0.020233	1	13283	13283		63.961	31.655	1	498930			29182	672	16865	16866	35952	35952					0.06566889028476908
LYSTIRPYL	9	Unmodified	_LYSTIRPYL_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENST00000479481.5_1_10:99131673-99132940:-|nuORF	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.3179321289062	2	563.318774	1124.623	0.45462	0.00025609	-1.0098	-0.00056883	-0.55516	-0.00031273	563.3183171616855	55.687	0.51289	55.668	55.508	56.021	-0.019077					31	18	2	0	0	0	0.04299	1	13369	13369		55.503	24.866	1	549830			29183	672	16865	16866	35953	35953					0.06566889028476908
LYSTIRPYL	9	Unmodified	_LYSTIRPYL_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENST00000479481.5_1_10:99131673-99132940:-|nuORF	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.318774	1124.623	0.27827	0.00015675	-0.94331	-0.00053138	-0.66504	-0.00037463	563.3181905715526	55.575	0.41352	55.575	55.374	55.787	0	-0.031865	6.6545E-05	NaN	63.961	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454810			29184	672	16865	16866							0.06566889028476908
LYSTYSPPF	9	Unmodified	_LYSTYSPPF_					0	0	0			REV__ENSG00000099381|ENST00000262519|SETD1A	REV__ENSG00000099381|ENST00000262519|SETD1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2955322265625	2	537.760758	1073.50696	0.46951	0.00025248	-4.0679	-0.0021875	-3.5984	-0.0019351	538.2590996726846	76.582	0.46212	76.582	76.396	76.858	0					23	16	2	0	0	0	0.19839	1	19722	19722		28.487	12.64	1	301540	+		29185	14134	16866	16867	35954	35954					-0.02685054542234866
LYSVLLAGLI	10	Unmodified	_LYSVLLAGLI_					0	0	0			REV__ENSG00000116996|ENST00000366570|ZP4	REV__ENSG00000116996|ENST00000366570|ZP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3057861328125	2	531.333893	1060.65323	0.40694	0.00021622	0.1724	9.1601E-05	0.57933	0.00030782	531.3340101919326	70.437	0.48105	70.498	70.237	70.718	0.060783					23	16	2	0	0	0	0.31629	1	17789	17789		10.074	0	1	148110	+		29186	14952	16867	16868	35955	35955					0.12533247693681915
LYSVLLAGLI	10	Unmodified	_LYSVLLAGLI_					0	0	0			REV__ENSG00000116996|ENST00000366570|ZP4	REV__ENSG00000116996|ENST00000366570|ZP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.333893	1060.65323	0.52023	0.00027642	0.25992	0.0001381	0.78015	0.00041452	531.3340926460739	70.491	0.38389	70.491	70.273	70.657	0	-0.010853	9.6607E-05	NaN	10.074	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114410	+		29187	14952	16867	16868							0.12533247693681915
LYSVPPDRV	9	Unmodified	_LYSVPPDRV_					0	0	0		nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	nc|ENSG00000067177|P46020-3|PHKA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.8035888671875	2	523.287474	1044.5604	0.11861	6.2067E-05	-0.034844	-1.8234E-05	0.083766	4.3834E-05	523.7899303609147	24.865	1.1684	24.833	24.545	25.713	-0.031408					73	40	3	0	0	0	0.27532	1	4068	4068		12.532	3.9383	1	151030			29188	859	16868	16869	35956	35956					0.03989742960266085
LYSVVFQEI	9	Unmodified	_LYSVVFQEI_					0	0	0		ENST00000498474.2_1_X:7003468-7066154:-|nuORF;nc|ENSG00000130021|Q08623-2|PUDP;nc|ENSG00000130021|Q08623-3|PUDP;ENSG00000130021|ENST00000381077|PUDP;nc|ENSG00000130021|Q08623-4|PUDP	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7598266601562	2	549.297507	1096.58046	0.82941	0.00045559	0.64492	0.00035425	1.4743	0.00080985	549.2979284353004	78.166	0.34787	78.166	78.09	78.438	0					17	12	2	0	0	0	0.22674	1	20214	20214		17.113	10.907	1	107120			29189	3446	16869	16870	35957	35957					0.03603493900254762
LYSVVFQEI	9	Unmodified	_LYSVVFQEI_					0	0	0		ENST00000498474.2_1_X:7003468-7066154:-|nuORF;nc|ENSG00000130021|Q08623-2|PUDP;nc|ENSG00000130021|Q08623-3|PUDP;ENSG00000130021|ENST00000381077|PUDP;nc|ENSG00000130021|Q08623-4|PUDP	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7595825195312	2	549.297507	1096.58046	0.79032	0.00043412	0.52831	0.0002902	1.3186	0.00072432	549.7989011644213	78.211	0.32542	78.269	78.089	78.414	0.058151					17	11	2	0	0	0	0.20167	1	20185	20185		22.736	8.8302	1	150620			29190	3446	16869	16870	35958	35958					0.03603493900254762
LYSWGMGEKNQ	11	Unmodified	_LYSWGMGEKNQ_					0	0	0			REV__nc|ENSG00000121749|Q8TC07|TBC1D15	REV__nc|ENSG00000121749|Q8TC07|TBC1D15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.5390625	3	438.204534	1311.59177	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.532	1	60.532	60.032	61.032	0								0	0	0	0.33453	1	14810	14810		11.631	0.73241	1		+		29191	22971	16870	16871	35959	35959					-0.05156052067923156
LYSYYMFT	8	Unmodified	_LYSYYMFT_					0	0	0			REV__ENSG00000175691|ENST00000314531|ZNF77	REV__ENSG00000175691|ENST00000314531|ZNF77	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7926025390625	2	544.243886	1086.47322	0.92182	0.00050169	-2.7549	-0.0014993	-1.8331	-0.00099763	544.7450061074346	77.099	0.84671	77.068	76.777	77.624	-0.031334					63	30	3	0	0	0	0.34218	1	19808	19808		9.3474	0.75416	1	121470	+		29192	17904	16871	16872	35960	35960					-0.06655799305644905
LYTALQQYF	9	Unmodified	_LYTALQQYF_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;nc|ENSG00000089053|Q9UJX4-2|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.2803955078125	2	573.795132	1145.57571	0.43205	0.00024791	-0.48128	-0.00027616	-0.04923	-2.8248E-05	573.7946663840121	77.161	0.70641	77.161	76.957	77.663	0					63	25	3	0	0	0	0.09064	1	19918	19918		56.177	30.778	1	683570			29193	1343	16872	16873	35961	35961					0.008746097574885425
LYTALQQYF	9	Unmodified	_LYTALQQYF_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;nc|ENSG00000089053|Q9UJX4-2|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.794921875	2	573.795132	1145.57571	0.47879	0.00027473	-0.73116	-0.00041954	-0.25237	-0.00014481	573.7945353621556	77.14	0.84376	77.196	76.922	77.766	0.055412					63	29	3	0	0	0	0.012929	1	19923	19923		74.929	40.827	1	596150			29194	1343	16872	16873	35962	35962					0.008746097574885425
LYTALQQYF	9	Unmodified	_LYTALQQYF_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;nc|ENSG00000089053|Q9UJX4-2|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.2805786132812	2	573.795132	1145.57571	0.58781	0.00033728	-0.64287	-0.00036887	-0.055061	-3.1594E-05	573.7944885895306	77.202	0.7737	77.171	76.93	77.704	-0.031334					66	27	3	0	0	0	0.15943	1	19879	19879		39.95	13.682	1	864750			29195	1343	16872	16873	35963	35963					0.008746097574885425
LYTALRCSAAP	11	Unmodified	_LYTALRCSAAP_					0	0	0		nc|ENSG00000250120|Q9Y5I2-3|PCDHA10;ENSG00000250120|ENST00000307360|PCDHA10	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3054809570312	2	583.305341	1164.59613	0.32899	0.0001919	0.64013	0.00037339	0.96912	0.0005653	583.3058525188594	73.021	1.1252	73.021	72.613	73.738	0					108	40	4	0	0	0	0.39234	1	18722	18722		12.241	1.4167	1	698060			29196	8589	16873	16874	35964	35964					0.020414571456285557
LYTALRCSAAP	11	Unmodified	_LYTALRCSAAP_					0	0	0		nc|ENSG00000250120|Q9Y5I2-3|PCDHA10;ENSG00000250120|ENST00000307360|PCDHA10	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3054809570312	2	583.305341	1164.59613	0.22739	0.00013264	0.83866	0.00048919	1.066	0.00062183	583.3058529784336	72.983	1.1858	73.036	72.539	73.725	0.053833					112	42	4	0	0	0	0.35522	1	18707	18707		17.113	3.2068	1	634780			29197	8589	16873	16874	35965	35965					0.020414571456285557
LYTALRCSAAP	11	Unmodified	_LYTALRCSAAP_					0	0	0		nc|ENSG00000250120|Q9Y5I2-3|PCDHA10;ENSG00000250120|ENST00000307360|PCDHA10	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3056030273438	2	583.305341	1164.59613	0.42447	0.0002476	0.96675	0.00056391	1.3912	0.00081151	583.3057615383146	73.082	1.1433	73.052	72.627	73.77	-0.029297					90	41	3	0	0	0	0.35522	1	18729	18729		17.113	3.2068	1	568450			29198	8589	16873	16874	35966	35966					0.020414571456285557
LYTDIINIF	9	Unmodified	_LYTDIINIF_					0	0	0		ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3052978515625	2	556.305332	1110.59611	0.19905	0.00011073	0.018207	1.0129E-05	0.21726	0.00012086	556.305112585648	93.46	0.71117	93.46	93.232	93.943	0					175	60	4	0	0	0	0.0018995	2	24889	24889;24927		111.29	18.465	1	615010			29199	7071	16874	16875	35967;35968	35967					0.045237804172757023
LYTDIINIF	9	Unmodified	_LYTDIINIF_					0	0	0		ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3052368164062	2	556.305332	1110.59611	0.27773	0.0001545	0.023407	1.3021E-05	0.30113	0.00016752	556.3050547496492	93.342	0.64217	93.429	93.188	93.83	0.086678					163	53	5	0	0	0	0.0028626	2	24873	24831;24873		103.35	18.081	1	960970			29200	7071	16874	16875	35969;35970	35970					0.045237804172757023
LYTDIINIF	9	Unmodified	_LYTDIINIF_					0	0	0		ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3054809570312	2	556.305332	1110.59611	0.3795	0.00021112	-0.41797	-0.00023252	-0.038467	-2.14E-05	556.304965457233	93.455	0.69459	93.455	93.2	93.895	-0.00051117					150	58	3	0	0	0	7.827E-05	2	24881	24881;24922		144.35	26.752	1	965160			29201	7071	16874	16875	35971;35972	35971					0.045237804172757023
LYTDIINIF	9	Unmodified	_LYTDIINIF_					0	0	0		ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	556.305332	1110.59611	0.26292	0.00014626	0.28454	0.00015829	0.54746	0.00030455	556.3053987319192	93.767	0.23265	93.853	93.783	94.015	0.08667	0.19682	0.00028718	NaN	111.29	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90487			29202	7071	16874	16875							0.045237804172757023
LYTDSCCPAGI	11	Unmodified	_LYTDSCCPAGI_					0	0	0		ENSG00000164292|ENST00000379982|RHOBTB3	ENSG00000164292|ENST00000379982|RHOBTB3	ENSG00000164292|ENST00000379982|RHOBTB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.7465209960938	2	571.746467	1141.47838	0.3613	0.00020657	-0.4796	-0.00027421	-0.11829	-6.7634E-05	571.746229994021	60.396	0.96235	60.491	59.961	60.923	0.095093					103	34	4	0	0	0	0.20634	1	14826	14826		30.637	1.555	1	6344500			29203	5820	16875	16876	35973	35973					-0.08669863505338071
LYTDSCTRIL	10	Unmodified	_LYTDSCTRIL_					0	0	0		ENSG00000162843|ENST00000437684|WDR64;nc|ENSG00000162843|B1ANS9|WDR64	ENSG00000162843|ENST00000437684|WDR64	ENSG00000162843|ENST00000437684|WDR64	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.8027954101562	2	592.802631	1183.59071	0.4847	0.00028733	-0.57491	-0.00034081	-0.090209	-5.3476E-05	592.8022193038796	74.048	2.3141	74.048	73.163	75.477	0					135	81	2	0	0	0	0.34325	1	18806	18806		13.906	0	1	1572200			29204	5624	16876	16877	35974	35974					0.00625733563151698
LYTDSCTRIL	10	Unmodified	_LYTDSCTRIL_					0	0	0		ENSG00000162843|ENST00000437684|WDR64;nc|ENSG00000162843|B1ANS9|WDR64	ENSG00000162843|ENST00000437684|WDR64	ENSG00000162843|ENST00000437684|WDR64	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.3040771484375	2	592.802631	1183.59071	0.36337	0.00021541	-0.38669	-0.00022923	-0.023323	-1.3826E-05	592.8022604584721	74.115	2.4996	74.167	73.008	75.508	0.052368					233	89	3	0	0	0	0.36786	1	18724	18724		9.3831	9.3831	1	1313800			29205	5624	16876	16877	35975	35975					0.00625733563151698
LYTDSCTRIL	10	Unmodified	_LYTDSCTRIL_					0	0	0		ENSG00000162843|ENST00000437684|WDR64;nc|ENSG00000162843|B1ANS9|WDR64	ENSG00000162843|ENST00000437684|WDR64	ENSG00000162843|ENST00000437684|WDR64	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.3030395507812	2	592.802631	1183.59071	0.45822	0.00027163	-0.49852	-0.00029552	-0.040297	-2.3888E-05	592.8022078575605	74.159	2.7132	74.129	72.9	75.613	-0.030655					245	98	3	0	0	0	0.34325	1	18722	18722		13.906	3.0821	1	1775400			29206	5624	16876	16877	35976	35976					0.00625733563151698
LYTDSMFTI	9	Unmodified	_LYTDSMFTI_					0	0	0		ENSG00000171865|ENST00000315212|RNASEH1	ENSG00000171865|ENST00000315212|RNASEH1	ENSG00000171865|ENST00000315212|RNASEH1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.7461547851562	2	545.759901	1089.50525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.747	1	71.804	71.304	72.304	0.056572								0	0	0	0.17683	1	18247	18247		28.487	6.7402	1				29207	6590	16877	16878	35977	35977					-0.035924316224736685
LYTDSMFTI	9	Unmodified	_LYTDSMFTI_					0	0	0		ENSG00000171865|ENST00000315212|RNASEH1	ENSG00000171865|ENST00000315212|RNASEH1	ENSG00000171865|ENST00000315212|RNASEH1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.7457885742188	2	545.759901	1089.50525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.062	1	72.035	71.535	72.535	-0.027275								0	0	0	0.17683	1	18337	18337		28.487	5.3384	1				29208	6590	16877	16878	35978	35978					-0.035924316224736685
LYTEAIKFF	9	Unmodified	_LYTEAIKFF_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.2900390625	2	566.307875	1130.6012	0.11081	6.2753E-05	-0.1544	-8.7439E-05	-0.043591	-2.4686E-05	566.3077314971333	69.695	0.49246	69.695	69.428	69.92	0					45	17	3	0	0	0	0.10135	1	17685	17685		52.268	22.044	1	781130			29209	592	16878	16879	35979	35979					0.04112084279881856
LYTEAIKFF	9	Unmodified	_LYTEAIKFF_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.2899169921875	2	566.307875	1130.6012	0.22736	0.00012876	-0.09139	-5.1755E-05	0.13597	7.7003E-05	566.3076994025129	69.651	0.48024	69.717	69.487	69.967	0.06604					44	16	3	0	0	0	0.051692	1	17671	17671		52.268	22.044	1	785920			29210	592	16878	16879	35980	35980					0.04112084279881856
LYTEAIKFF	9	Unmodified	_LYTEAIKFF_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.2899780273438	2	566.307875	1130.6012	0.18451	0.00010449	-0.046977	-2.6604E-05	0.13753	7.7883E-05	566.3077962369289	69.743	0.50273	69.721	69.462	69.965	-0.022087					46	18	3	0	0	0	0.20167	1	17687	17687		29.082	15.176	1	749380			29211	592	16878	16879	35981	35981					0.04112084279881856
LYTEKFEEF	9	Unmodified	_LYTEKFEEF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.29052734375	2	603.289879	1204.56521	0.75502	0.00045549	3.868	0.0023335	4.623	0.002789	603.2930960507748	54.37	0.67697	54.37	53.974	54.651	0					107	24	6	0	0	0	6.5985E-11	4	12844	12844;12888;12924;12952		181.69	120.33	1	72575000			29212	1243	16879	16880	35982;35983;35984;35985	35982					-0.028894176876065103
LYTEKFEEF	9	Unmodified	_LYTEKFEEF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.7802734375	2	603.289879	1204.56521	1.0884	0.00065662	-2.2737	-0.0013717	-1.1853	-0.0007151	603.2882158121896	56.033	0.53386	56.033	55.707	56.241	0					22	18	2	0	0	0	0.097101	1	13345	13345		49.527	20.446	1	667340			29213	1243	16879	16880	35986	35986					-0.028894176876065103
LYTEKFEEF	9	Unmodified	_LYTEKFEEF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.2905883789062	2	603.289879	1204.56521	0.75032	0.00045266	3.9048	0.0023557	4.6551	0.0028084	603.29308073876	54.304	0.63194	54.368	54.01	54.642	0.063202					101	23	6	0	0	0	2.973E-07	3	12826	12826;12871;12912		168.54	109.86	1	72712000			29214	1243	16879	16880	35987;35988;35989	35987					-0.028894176876065103
LYTEKFEEF	9	Unmodified	_LYTEKFEEF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3011474609375	2	603.289879	1204.56521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.43	1	55.5	55	56	0.070885								0	0	0	0.00036775	1	13235	13235		107.1	54.831	1				29215	1243	16879	16880	35990	35990					-0.028894176876065103
LYTEKFEEF	9	Unmodified	_LYTEKFEEF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.29248046875	2	603.289879	1204.56521	0.64076	0.00038656	3.9455	0.0023803	4.5862	0.0027668	603.2932873990405	54.656	0.62064	54.64	54.251	54.872	-0.015919					104	21	6	0	0	0	6.5985E-11	4	12965	12916;12965;13013;13056		181.69	120.33	1	86943000			29216	1243	16879	16880	35991;35992;35993;35994	35992					-0.028894176876065103
LYTELFTGF	9	Unmodified	_LYTELFTGF_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.7761840820312	2	545.776408	1089.53826	0.639	0.00034875	-0.76622	-0.00041818	-0.12722	-6.9433E-05	545.7756929318379	86.57	0.57809	86.57	86.279	86.857	0					57	23	3	0	0	0	0.10135	1	22816	22816		52.268	21.632	1	331260			29217	5557	16880	16881	35995	35995					-0.0029248150810872175
LYTELFTGF	9	Unmodified	_LYTELFTGF_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.7762451171875	2	545.776408	1089.53826	0.65562	0.00035782	-0.65106	-0.00035533	0.0045565	2.4868E-06	545.775862142872	86.473	0.52182	86.557	86.315	86.837	0.084251					49	21	3	0	0	0	0.10197	1	22784	22784		37.974	12.575	1	292870			29218	5557	16880	16881	35996	35996					-0.0029248150810872175
LYTELFTGF	9	Unmodified	_LYTELFTGF_					0	0	0		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.77587890625	2	545.776408	1089.53826	0.73686	0.00040216	-0.75134	-0.00041006	-0.01448	-7.9031E-06	545.7757441054695	86.538	0.67932	86.529	86.283	86.962	-0.0090027					59	26	3	0	0	0	0.074331	1	22797	22797		61.357	37.568	1	300240			29219	5557	16880	16881	35997	35997					-0.0029248150810872175
LYTETRLQF	9	Unmodified	_LYTETRLQF_					0	0	0		ENSG00000128408|ENST00000614167|RIBC2	ENSG00000128408|ENST00000614167|RIBC2	ENSG00000128408|ENST00000614167|RIBC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.3013305664062	2	585.811313	1169.60807	0.54727	0.00032059	1.4648	0.00085809	2.0121	0.0011787	585.8124971494806	50.077	0.20328	50.122	49.957	50.16	0.044891					10	7	2	0	0	0	0.12563	1	11594	11594		39.95	13.929	1	271400			29220	3368	16881	16882	35998	35998					0.030053971604502294
LYTETRLQF	9	Unmodified	_LYTETRLQF_					0	0	0		ENSG00000128408|ENST00000614167|RIBC2	ENSG00000128408|ENST00000614167|RIBC2	ENSG00000128408|ENST00000614167|RIBC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.3011474609375	2	585.811313	1169.60807	0.68823	0.00040317	1.0774	0.00063116	1.7656	0.0010343	585.8119350408083	50.096	0.23684	50.116	49.989	50.226	0.020695					11	8	2	0	0	0	0.15943	1	11602	11602		32.786	6.765	1	308240			29221	3368	16881	16882	35999	35999					0.030053971604502294
LYTGSGYR	8	Unmodified	_LYTGSGYR_					0	0	0		ENST00000344693.5_1_21:15326407-15352225:-|nuORF;nc|ENSG00000290972|A0PJZ0|ANKRD20A5P;ENST00000581935.5_1_18:14179393-14184104:+|nuORF;ENST00000581181.5_1_18:14179393-14187439:+|nuORF	ENST00000344693.5_1_21:15326407-15352225:-|nuORF	ENST00000344693.5_1_21:15326407-15352225:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2792053222656	2	458.729792	915.445031	0.27498	0.00012614	-0.40741	-0.00018689	-0.13243	-6.075E-05	458.7295199176299	29.403	0.54988	29.403	29.169	29.718	0					31	19	3	0	0	0	0.33993	1	5287	5287		16.942	3.4344	1	141080			29222	9557	16882	16883	36000	36000					-0.016073611707156488
LYTGSLLHF	9	Unmodified	_LYTGSLLHF_					0	0	0			REV__ENST00000507292.1_1_6:35824956-35836900:-|nuORF	REV__ENST00000507292.1_1_6:35824956-35836900:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.305419921875	2	525.784567	1049.55458	0.79626	0.00041866	-3.8512	-0.0020249	-3.0549	-0.0016062	525.7825988464114	54.414	0.3829	54.414	54.268	54.651	0					22	13	2	0	0	0	0.18943	1	12933	12933		30.225	0	1	308160	+		29223	21758	16883	16884	36001	36001					0.031786444485987886
LYTGTVSSF	9	Unmodified	_LYTGTVSSF_					0	0	0		nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B	nc|ENSG00000185033|Q9NPR2-2|SEMA4B	nc|ENSG00000185033|Q9NPR2-2|SEMA4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.75860595703125	2	487.745108	973.475663	0.49327	0.00024059	1.4117	0.00068856	1.905	0.00092915	487.7456415529797	55.471	0.53075	55.542	55.297	55.828	0.070885					35	19	2	0	0	0	0.01083	1	13242	13242		78.149	20.678	1	731530			29224	7499	16884	16885	36002	36002					-0.012136275763168669
LYTGTVSSF	9	Unmodified	_LYTGTVSSF_					0	0	0		nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B	nc|ENSG00000185033|Q9NPR2-2|SEMA4B	nc|ENSG00000185033|Q9NPR2-2|SEMA4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7587585449219	2	487.745108	973.475663	0.38349	0.00018705	1.0948	0.00053397	1.4783	0.00072102	487.74546252164055	55.603	0.59438	55.584	55.29	55.884	-0.019081					39	21	2	0	0	0	0.015402	1	13264	13264		71.134	22.788	1	725020			29225	7499	16884	16885	36003	36003					-0.012136275763168669
LYTGTVSSF	9	Unmodified	_LYTGTVSSF_					0	0	0		nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B	nc|ENSG00000185033|Q9NPR2-2|SEMA4B	nc|ENSG00000185033|Q9NPR2-2|SEMA4B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	487.745108	973.475663	0.24035	0.00011723	1.4021	0.00068386	1.6424	0.00080108	487.7456591407619	55.511	0.57994	55.511	55.274	55.854	0	-0.034617	7.1733E-05	NaN	78.149	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	676990			29226	7499	16884	16885							-0.012136275763168669
LYTHIVTDI	9	Unmodified	_LYTHIVTDI_					0	0	0		ENSG00000198301|ENST00000356260|SDAD1;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF;ENST00000515836.5_1_4:76896898-76898807:-|nuORF	ENSG00000198301|ENST00000356260|SDAD1	ENSG00000198301|ENST00000356260|SDAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.3110961914062	2	537.795132	1073.57571	0.55441	0.00029816	0.27518	0.00014799	0.82959	0.00044615	537.7948194990495	52.633	0.32485	52.684	52.523	52.848	0.050575					17	11	2	0	0	0	0.15219	1	12386	12386		30.637	5.2372	1	272900			29227	8062	16885	16886	36004	36004					0.0418660975747116
LYTIYLHG	8	Unmodified	_LYTIYLHG_					0	0	0		ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.7791748046875	2	490.26601	978.517468	0.31762	0.00015572	1.999	0.00098004	2.3166	0.0011358	490.2661223420262	73.936	1.8586	73.905	72.226	74.085	-0.030663					87	66	2	0	0	0	0.34218	1	18426	18426		9.3474	0	1	332220			29228	2939	16886	16887	36005	36005					0.027349729028514957
LYTLYPHC	8	Unmodified	_LYTLYPHC_					0	0	0		ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	ENST00000523028.5_1_16:21892164-21910369:-|nuORF	ENST00000523028.5_1_16:21892164-21910369:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.27716064453125	2	505.244221	1008.47389	0.27536	0.00013912	-0.030939	-1.5632E-05	0.24442	0.00012349	505.2441773076981	49.174	0.50042	49.219	48.989	49.489	0.044891					28	17	2	0	0	0	0.34046	1	11312	11312		9.3474	1.4373	1	327540			29229	9306	16887	16888	36006	36006					-0.030009598659376024
LYTMDGITV	9	Unmodified	_LYTMDGITV_					0	0	0		ENST00000368520.1_1_10:135345455-135368187:+|nuORF;ENSG00000130649|ENST00000252945|CYP2E1	ENST00000368520.1_1_10:135345455-135368187:+|nuORF	ENST00000368520.1_1_10:135345455-135368187:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7533874511719	2	506.754618	1011.49468	0.33808	0.00017132	-2.1223	-0.0010755	-1.7843	-0.00090418	506.7534359491086	70.999	0.472	70.999	70.711	71.183	0					32	16	3	0	0	0	0.17787	1	18047	18047		26.884	0	1	637520			29230	3493	16888	16889	36007	36007					-0.010604142769238933
LYTMDGITV	9	Unmodified	_LYTMDGITV_					0	0	0		ENST00000368520.1_1_10:135345455-135368187:+|nuORF;ENSG00000130649|ENST00000252945|CYP2E1	ENST00000368520.1_1_10:135345455-135368187:+|nuORF	ENST00000368520.1_1_10:135345455-135368187:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.75360107421875	2	506.754618	1011.49468	0.39345	0.00019938	-2.2094	-0.0011196	-1.816	-0.00092024	506.75356001935234	71.078	0.4941	71.053	70.744	71.238	-0.024864					30	17	2	0	0	0	0.1659	1	18052	18052		28.487	0	1	528110			29231	3493	16888	16889	36008	36008					-0.010604142769238933
LYTPSYSLPF	10	Unmodified	_LYTPSYSLPF_					0	0	0		nc|ENSG00000159263|Q14190-2|SIM2;ENST00000481185.1_1_21:38072046-38117571:+|nuORF;ENSG00000159263|ENST00000290399|SIM2	nc|ENSG00000159263|Q14190-2|SIM2	nc|ENSG00000159263|Q14190-2|SIM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8294677734375	2	594.30279	1186.59103	0.74705	0.00044397	1.0412	0.00061877	1.7882	0.0010627	594.3029938410019	77.416	0.14059	77.471	77.43	77.571	0.055412					5	4	2	0	0	0	0.31482	1	19968	19968		11.64	0	1	76892			29232	5397	16889	16890	36009	36009					0.005194765546548297
LYTPVLIRF	9	Unmodified	_LYTPVLIRF_					0	0	0		ENST00000530138.3_1_11:67766987-67771573:-|nuORF;ENSG00000110057|ENST00000227471|UNC93B1;ENST00000528096.1_1_11:67766987-67770655:-|nuORF	ENST00000530138.3_1_11:67766987-67771573:-|nuORF	ENST00000530138.3_1_11:67766987-67771573:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.340087890625	2	561.33951	1120.66447	0.37768	0.00021201	0.77552	0.00043533	1.1532	0.00064734	561.3399944294281	72.954	0.44382	72.954	72.775	73.218	0					37	15	3	0	0	0	0.010453	1	18632	18632		78.728	44.626	1	564470			29233	2292	16890	16891	36010	36010					0.10896069787804663
LYTPVLIRF	9	Unmodified	_LYTPVLIRF_					0	0	0		ENST00000530138.3_1_11:67766987-67771573:-|nuORF;ENSG00000110057|ENST00000227471|UNC93B1;ENST00000528096.1_1_11:67766987-67770655:-|nuORF	ENST00000530138.3_1_11:67766987-67771573:-|nuORF	ENST00000530138.3_1_11:67766987-67771573:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3399658203125	2	561.33951	1120.66447	0.3386	0.00019007	0.66221	0.00037173	1.0008	0.0005618	561.3399911129985	72.904	0.49207	72.958	72.789	73.281	0.053833					40	17	3	0	0	0	0.010453	1	18596	18596		78.728	38.771	1	565840			29234	2292	16890	16891	36011	36011					0.10896069787804663
LYTPVLIRF	9	Unmodified	_LYTPVLIRF_					0	0	0		ENST00000530138.3_1_11:67766987-67771573:-|nuORF;ENSG00000110057|ENST00000227471|UNC93B1;ENST00000528096.1_1_11:67766987-67770655:-|nuORF	ENST00000530138.3_1_11:67766987-67771573:-|nuORF	ENST00000530138.3_1_11:67766987-67771573:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3399047851562	2	561.33951	1120.66447	0.40755	0.00022877	0.60841	0.00034153	1.016	0.0005703	561.3398501272374	73.013	0.41576	72.984	72.793	73.209	-0.029305					39	14	4	0	0	0	0.0013036	1	18618	18618		118.89	61.423	1	529490			29235	2292	16890	16891	36012	36012					0.10896069787804663
LYTQLSLLF	9	Unmodified	_LYTQLSLLF_					0	0	0			REV__ENST00000591893.1_1_17:73781488-73781794:-|nuORF	REV__ENST00000591893.1_1_17:73781488-73781794:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.80029296875	2	549.3157	1096.61685	0.28938	0.00015896	-0.57029	-0.00031327	-0.28092	-0.00015431	549.315175154723	60.233	0.62908	60.221	59.915	60.544	-0.011486					46	22	3	0	0	0	0.18123	1	14808	14808		34.402	9.0024	1	943770	+		29236	22569	16891	16892	36013	36013					0.07240370796944262
LYTQLSLLF	9	Unmodified	_LYTQLSLLF_					0	0	0			REV__ENST00000591893.1_1_17:73781488-73781794:-|nuORF	REV__ENST00000591893.1_1_17:73781488-73781794:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	549.3157	1096.61685	0.071995	3.9548E-05	0.10747	5.9037E-05	0.17947	9.8585E-05	549.3155186680566	60.231	0.48871	60.231	60.006	60.495	0	0.005607	0.00024401	NaN	34.402	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	940010	+		29237	22569	16891	16892							0.07240370796944262
LYTQLSLLF	9	Unmodified	_LYTQLSLLF_					0	0	0			REV__ENST00000591893.1_1_17:73781488-73781794:-|nuORF	REV__ENST00000591893.1_1_17:73781488-73781794:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	549.3157	1096.61685	-0.1458	-8.0088E-05	0.36379	0.00019984	0.21799	0.00011975	549.3156530077945	60.129	0.49047	60.224	59.932	60.422	0.095089	-0.0014195	0.0005256	NaN	34.402	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	785300	+		29238	22569	16891	16892							0.07240370796944262
LYTRGCHSD	9	Unmodified	_LYTRGCHSD_					0	0	0		ENST00000546536.5_1_14:105957646-105963882:+|nuORF;nc|ENSG00000185347|Q86SX3-6|TEDC1;ENSG00000185347|ENST00000392523|TEDC1;nc|ENSG00000185347|Q86SX3-4|TEDC1	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.802978515625	2	526.234916	1050.45528	0.41783	0.00021988	-0.86081	-0.00045299	-0.44298	-0.00023311	526.2343158706004	42.75	0.38379	42.75	42.624	43.008	0					21	13	2	0	0	0	0.24848	1	9376	9376		13.906	7.1829	1	299720			29239	7527	16892	16893	36014	36014					-0.06793121507780597
LYTTLGALFP	10	Unmodified	_LYTTLGALFP_					0	0	0			REV__ENSG00000181634|ENST00000374045|TNFSF15	REV__ENSG00000181634|ENST00000374045|TNFSF15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.816162109375	2	548.307875	1094.6012	0.40758	0.00022348	-2.7249	-0.0014941	-2.3173	-0.0012706	548.306183057034	76.13	0.33383	76.183	75.916	76.25	0.053413					15	11	2	0	0	0	0.30079	1	19580	19580		20.454	2.3073	1	226830	+		29240	18158	16893	16894	36015	36015					0.05768084279907271
LYTTVERSE	9	Unmodified	_LYTTVERSE_					0	0	0			REV__nc|ENSG00000197415|Q14D04-2|VEPH1	REV__nc|ENSG00000197415|Q14D04-2|VEPH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2858276367188	2	549.277303	1096.54005	0.44866	0.00024644	-1.0188	-0.00055959	-0.57012	-0.00031315	549.2760614320933	43.997	0.60856	44.081	43.657	44.266	0.083996					48	22	3	0	0	0	0.13898	1	9758	9758		43.858	5.8843	1	857140	+		29241	18734	16894	16895	36016	36016					-0.0043547249019866285
LYTTVQTLF	9	Unmodified	_LYTTVQTLF_					0	0	0			REV__ENSG00000187823|ENST00000695839|RTL4	REV__ENSG00000187823|ENST00000695839|RTL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2797241210938	2	543.297507	1084.58046	0.70235	0.00038159	1.5344	0.00083366	2.2368	0.0012152	543.298458675954	53.806	0.15997	53.806	53.698	53.858	0					6	5	2	0	0	0	0.20167	1	12733	12733		29.082	0	1	200570	+		29242	18524	16895	16896	36017	36017					0.04155493900225338
LYTTVQTLF	9	Unmodified	_LYTTVQTLF_					0	0	0			REV__ENSG00000187823|ENST00000695839|RTL4	REV__ENSG00000187823|ENST00000695839|RTL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.279541015625	2	543.297507	1084.58046	0.71189	0.00038677	-1.8863	-0.0010248	-1.1744	-0.00063806	543.2975955540885	53.918	0.24219	53.908	53.794	54.036	-0.0096092					16	8	3	0	0	0	0.088443	1	12789	12789		39.95	13.066	1	231300	+		29243	18524	16895	16896	36018	36018					0.04155493900225338
LYTTVQTLF	9	Unmodified	_LYTTVQTLF_					0	0	0			REV__ENSG00000187823|ENST00000695839|RTL4	REV__ENSG00000187823|ENST00000695839|RTL4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.297507	1084.58046	0.71189	0.00038677	-1.8863	-0.0010248	-1.1744	-0.00063806	543.2975955540885	53.918	0.24219	53.908	53.794	54.036	-0.0096092	0.075775	-0.0033608	NaN	39.95	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231300	+		29244	18524	16895	16896							0.04155493900225338
LYTTYLLMG	9	Unmodified	_LYTTYLLMG_					0	0	0		nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7589111328125	2	537.780636	1073.54672	0.58873	0.00031661	1.7535	0.00094302	2.3423	0.0012596	537.7816630470983	36.121	0.34438	36.121	35.988	36.332	0					17	12	2	0	0	0	0.25526	1	7287	7287		7.9102	0	1	136920			29245	6283	16896	16897	36019	36019					0.012887491368474002
LYTVVVYDF	9	Unmodified	_LYTVVVYDF_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.7743530273438	2	559.792058	1117.56956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.15	1	81.215	80.715	81.715	0.065094								0	0	0	0.21726	1	21116	21116		16.942	1.0951	1				29246	3879	16897	16898	36020	36020					0.015480915259331596
LYVAGNLGGKF	11	Unmodified	_LYVAGNLGGKF_					0	0	0			REV__ENST00000538387.1_1_12:30882254-30888041:-|nuORF	REV__ENST00000538387.1_1_12:30882254-30888041:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.29541015625	2	569.816399	1137.61824	0.42446	0.00024186	0.40714	0.00023199	0.8316	0.00047386	569.8164570613561	64.543	0.54544	64.534	64.289	64.835	-0.0095291					45	19	3	0	0	0	0.30789	1	15970	15970		22.736	3.2973	1	953650	+		29247	14691	16898	16899	36021	36021					0.054940048857361035
LYVAGNLGGKF	11	Unmodified	_LYVAGNLGGKF_					0	0	0			REV__ENST00000538387.1_1_12:30882254-30888041:-|nuORF	REV__ENST00000538387.1_1_12:30882254-30888041:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.816399	1137.61824	0.44982	0.00025632	0.44619	0.00025424	0.89601	0.00051056	569.8165506771757	64.516	0.75893	64.516	64.288	65.047	0	-0.0019924	3.2298E-05	NaN	22.736	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	788990	+		29248	14691	16898	16899							0.054940048857361035
LYVAGNLGGKF	11	Unmodified	_LYVAGNLGGKF_					0	0	0			REV__ENST00000538387.1_1_12:30882254-30888041:-|nuORF	REV__ENST00000538387.1_1_12:30882254-30888041:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	569.816399	1137.61824	0.53448	0.00030455	0.40078	0.00022837	0.93526	0.00053293	569.8164301809006	64.412	0.59552	64.505	64.284	64.88	0.092888	-0.013488	-1.9445E-05	NaN	22.736	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	791380	+		29249	14691	16898	16899							0.054940048857361035
LYVELQFF	8	Unmodified	_LYVELQFF_					0	0	0		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.7813110351562	2	529.781493	1057.54843	0.40721	0.00021573	-2.4172	-0.0012806	-2.01	-0.0010648	529.7812128802871	91.62	0.47321	91.711	91.556	92.029	0.090675					50	29	2	0	0	0	0.38703	1	24386	24386		20.871	1.4322	1	154350			29250	5666	16899	16900	36022	36022					0.021961262171089402
LYVFSVWV	8	Unmodified	_LYVFSVWV_					0	0	0		nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH;ENST00000588559.5_1_19:55705613-55720813:-|nuORF	nc|ENSG00000080031|Q9HD43-3|PTPRH	nc|ENSG00000080031|Q9HD43-3|PTPRH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.309814453125	2	506.778754	1011.54295	0.34649	0.0001756	0.0066786	3.3846E-06	0.35317	0.00017898	507.280055954153	96.016	0.17622	96.012	95.897	96.074	-0.0038223					21	14	2	0	0	0	0.34337	1	25656	25656		5.2307	2.9279	1	122730			29251	1148	16900	16901	36023	36023					0.03764447425282924
LYVFVGRDF	9	Unmodified	_LYVFVGRDF_					0	0	0		ENSG00000142511|ENST00000270590|GPR32	ENSG00000142511|ENST00000270590|GPR32	ENSG00000142511|ENST00000270590|GPR32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2756958007812	2	558.297842	1114.58113	0.35439	0.00019786	0.53922	0.00030104	0.89361	0.0004989	558.2982399621623	71.538	0.17986	71.538	71.402	71.582	0					8	5	2	0	0	0	0.19839	1	18161	18161		28.487	5.3384	1	248200			29252	4446	16901	16902	36024	36024					0.028423333399587136
LYVGKIPGF	9	Unmodified	_LYVGKIPGF_					0	0	0		ENST00000488620.5_1_9:116327559-116353744:+|nuORF	ENST00000488620.5_1_9:116327559-116353744:+|nuORF	ENST00000488620.5_1_9:116327559-116353744:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.29156494140625	2	497.292028	992.569503	0.39808	0.00019796	-1.4959	-0.00074391	-1.0978	-0.00054595	497.29123216509555	63.011	0.4491	63.011	62.776	63.225	0					30	16	2	0	0	0	0.062246	1	15590	15590		48.346	30.211	1	390260			29253	11136	16902	16903	36025	36025					0.0729213631661878
LYVGKIPGF	9	Unmodified	_LYVGKIPGF_					0	0	0		ENST00000488620.5_1_9:116327559-116353744:+|nuORF	ENST00000488620.5_1_9:116327559-116353744:+|nuORF	ENST00000488620.5_1_9:116327559-116353744:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.292028	992.569503	0.45045	0.000224	-1.3324	-0.00066261	-0.88199	-0.00043861	497.29155413106224	62.848	0.5195	62.944	62.736	63.256	0.095722	-0.019776	8.6173E-05	NaN	48.346	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411220			29254	11136	16902	16903							0.0729213631661878
LYVGKIPGF	9	Unmodified	_LYVGKIPGF_					0	0	0		ENST00000488620.5_1_9:116327559-116353744:+|nuORF	ENST00000488620.5_1_9:116327559-116353744:+|nuORF	ENST00000488620.5_1_9:116327559-116353744:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	497.292028	992.569503	0.30179	0.00015008	-1.4182	-0.00070525	-1.1164	-0.00055517	497.2913119464172	62.945	0.4619	62.936	62.731	63.193	-0.0085526	-0.027697	8.8472E-07	NaN	48.346	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366510			29255	11136	16902	16903							0.0729213631661878
LYVGWLLFL	9	Unmodified	_LYVGWLLFL_					0	0	0			REV__ENSG00000151025|ENST00000376351|GPR158	REV__ENSG00000151025|ENST00000376351|GPR158	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.239501953125	2	562.331153	1122.64775	0.47567	0.00026748	-1.956	-0.0010999	-1.4803	-0.00083243	562.3302351126449	77.228	0.21827	77.228	77.09	77.308	0					10	7	2	0	0	0	0.24542	1	19903	19903		14.582	2.9414	1	94029	+		29256	16523	16903	16904	36026	36026					0.09133568901847866
LYVHAMTTQQV	11	Unmodified	_LYVHAMTTQQV_					0	0	0			REV__L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|13|1|sense	REV__L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|13|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.88818359375	3	430.888546	1289.64381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.186	1	22.086	21.586	22.586	-0.10034								0	0	0	0.36872	1	3072	3072		4.1166	0.52957	1		+		29257	22826	16904	16905	36027	36027					0.010571113458127002
LYVHGRRW	8	Unmodified	_LYVHGRRW_					0	0	0			REV__ENST00000534591.1_1_11:64877478-64877652:+|nuORF	REV__ENST00000534591.1_1_11:64877478-64877652:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2785034179688	2	543.801417	1085.58828	0.47271	0.00025706	-0.39584	-0.00021526	0.076875	4.1805E-05	543.8015377440862	73.743	0.37252	73.796	73.553	73.926	0.052361					15	12	2	0	0	0	0.34092	1	18781	18781		13.508	0.97634	1	164570	+		29258	22054	16905	16906	36028	36028					0.048911107310459556
LYVHHFSK	8	Unmodified	_LYVHHFSK_					0	0	0			REV__nc|ENSG00000165164|Q6ZTR5-2|CFAP47	REV__nc|ENSG00000165164|Q6ZTR5-2|CFAP47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.7759399414062	2	515.777077	1029.5396	0.44269	0.00022833	-2.9169	-0.0015045	-2.4742	-0.0012761	515.7755192874063	64.06	0.48773	64.05	63.851	64.339	-0.0095291					29	17	2	0	0	0	0.19197	1	15891	15891		44.407	6.2558	1	403270	+		29259	17211	16906	16907	36029	36029					0.026011973712684267
LYVIGGNHF	9	Unmodified	_LYVIGGNHF_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7882385253906	2	510.269084	1018.52362	0.41076	0.0002096	0.6489	0.00033111	1.0597	0.00054071	510.2693946733659	53.163	0.50462	53.163	53.012	53.516	0					35	18	3	0	0	0	0.12846	1	12561	12561		44.407	28.56	1	455420			29260	300	16907	16908	36030	36030					0.015094911343794593
LYVIGGNHF	9	Unmodified	_LYVIGGNHF_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.78790283203125	2	510.269084	1018.52362	0.50259	0.00025646	0.32224	0.00016443	0.82484	0.00042089	510.26893199716596	53.082	0.4181	53.138	53.013	53.431	0.056255					23	14	2	0	0	0	0.081926	1	12505	12505		57.471	57.471	1	374860			29261	300	16907	16908	36031	36031					0.015094911343794593
LYVIGGNHF	9	Unmodified	_LYVIGGNHF_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7879638671875	2	510.269084	1018.52362	0.33625	0.00017158	0.34249	0.00017476	0.67874	0.00034634	510.26932319301903	53.316	0.54618	53.306	53.142	53.688	-0.0096054					34	20	3	0	0	0	0.12846	1	12562	12562		44.407	20.197	1	444680			29262	300	16907	16908	36032	36032					0.015094911343794593
LYVINNTLM	9	Unmodified	_LYVINNTLM_					0	0	0		ENSG00000012983|ENST00000682126|MAP4K5;ENST00000554990.5_1_14:50886739-50915587:-|nuORF	ENSG00000012983|ENST00000682126|MAP4K5	ENSG00000012983|ENST00000682126|MAP4K5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2459106445312	2	540.791535	1079.56852	0.50552	0.00027338	2.1782	0.001178	2.6837	0.0014513	540.7923066088038	71.124	0.94436	71.124	70.605	71.55	0					52	33	2	0	0	0	0.1939	1	17929	17929		30.637	7.4881	1	576630			29263	458	16908	16909	36033	36033					0.03191553885403664
LYVKCIDYN	9	Unmodified	_LYVKCIDYN_					0	0	0			REV__ENSG00000138944|ENST00000381176|SHISAL1	REV__ENSG00000138944|ENST00000381176|SHISAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.3035278320312	2	565.781167	1129.54778	0.35983	0.00020359	-0.37857	-0.00021419	-0.018739	-1.0602E-05	565.7808235360259	53.804	0.57056	53.794	53.329	53.899	-0.0096054					24	21	2	0	0	0	0.2322	1	12695	12695		20.454	3.3407	1	154420	+		29264	15963	16909	16910	36034	36034					-0.011810364942903107
LYVKHELGRP	10	Unmodified	_LYVKHELGRP_					0	0	0			REV__ENSG00000133316|ENST00000278856|WDR74	REV__ENSG00000133316|ENST00000278856|WDR74	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3696899414062	2	606.348397	1210.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.203	1	97.274	96.774	97.774	0.070465								0	0	0	0.37664	1	26004	26004		3.5965	0.31518	1		+		29265	15617	16910	16911	36035	36035					0.08532785042666546
LYVKHELGRP	10	Unmodified	_LYVKHELGRP_					0	0	0			REV__ENSG00000133316|ENST00000278856|WDR74	REV__ENSG00000133316|ENST00000278856|WDR74	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3699340820312	2	606.348397	1210.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.642	1	97.635	97.135	98.135	-0.0068283								0	0	0	0.37664	1	26145	26145		3.5965	0.31518	1		+		29266	15617	16910	16911	36036	36036					0.08532785042666546
LYVLGSPAMQ	10	Unmodified	_LYVLGSPAMQ_					0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2721557617188	2	539.78371	1077.55287	0.64743	0.00034947	-2.1596	-0.0011657	-1.5122	-0.00081624	539.7826468978574	54.215	0.63489	54.278	53.876	54.511	0.063206					52	22	3	0	0	0	0.29589	1	12920	12920		22.736	0	1	1311000			29267	7276	16911	16912	36037	36037					0.017192673683439352
LYVLIDRT	8	Unmodified	_LYVLIDRT_					0	0	0		ENST00000510786.1_1_4:164449902-164477015:-|nuORF;ENST00000476962.1_1_10:45953689-45956918:-|nuORF;nc|ENSG00000145416|Q8TCQ1-2|MARCHF1;nc|ENSG00000145416|Q8TCQ1|MARCHF1;nc|ENSG00000165406|Q5T0T0|MARCHF8;ENSG00000145416|ENST00000514618|MARCHF1;ENSG00000165406|ENST00000453424|MARCHF8	ENST00000510786.1_1_4:164449902-164477015:-|nuORF	ENST00000510786.1_1_4:164449902-164477015:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.79290771484375	2	496.792392	991.570232	0.18653	9.2668E-05	0.68459	0.0003401	0.87112	0.00043277	496.79283845189826	15.871	0.50755	15.761	15.517	16.025	-0.10982					27	16	3	0	0	0	0.4419	1	1154	1154		8.5933	0	1	82954			29268	4649	16912	16913	36038	36038					0.07410930965670559
LYVMGTLDFP	10	Unmodified	_LYVMGTLDFP_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.7796630859375	2	578.291368	1154.56818	0.22515	0.0001302	-4.1877	-0.0024217	-3.9625	-0.0022915	578.7906852984396	73.111	0.35201	73.164	73.01	73.362	0.053833					28	12	3	0	0	0	0.31051	1	18622	18622		16.942	3.0362	1	186880			29269	6498	16913	16914	36039	36039					-0.0029186583444698044
LYVNGFTHRS	10	Unmodified	_LYVNGFTHRS_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3076171875	2	597.306729	1192.59891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.009	1	30.009	29.509	30.509	0								0	0	0	0.37355	1	5439	5439		4.897	0.36815	1				29270	7225	16914	16915	36040	36040					0.01031048594791173
LYVNSFPLL	9	Unmodified	_LYVNSFPLL_					0	0	0		ENSG00000136560|ENST00000392749|TANK	ENSG00000136560|ENST00000392749|TANK	ENSG00000136560|ENST00000392749|TANK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7535400390625	2	533.302593	1064.59063	0.51016	0.00027207	0.014549	7.7589E-06	0.52471	0.00027983	533.3026042183545	83.39	0.62939	83.466	83.242	83.872	0.075981					40	24	3	0	0	0	0.21389	1	21794	21794		25.399	7.253	1	118160			29271	3983	16915	16916	36041	36041					0.060921016254724236
LYVPGLYFL	9	Unmodified	_LYVPGLYFL_					0	0	0			REV__nc|ENSG00000158220|A0FGR9-2|ESYT3	REV__nc|ENSG00000158220|A0FGR9-2|ESYT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.80810546875	2	542.807511	1083.60047	0.77384	0.00042005	0.16144	8.7628E-05	0.93528	0.00050768	542.807442506029	78.395	3.3081	78.395	77.204	80.513	0					287	127	4	0	0	0	0.32415	1	20635	20635		5.2307	0	1	1734500	+		29272	16805	16916	16917	36042	36042					0.062012896308715426
LYVPGLYFL	9	Unmodified	_LYVPGLYFL_					0	0	0			REV__nc|ENSG00000158220|A0FGR9-2|ESYT3	REV__nc|ENSG00000158220|A0FGR9-2|ESYT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.807861328125	2	542.807511	1083.60047	0.75743	0.00041114	0.28766	0.00015615	1.0451	0.00056728	542.8075322403537	78.36	2.9728	78.419	77.513	80.486	0.058159					343	116	4	0	0	0	0.29662	2	20601	20601;20650		9.3474	0	1	1386000	+		29273	16805	16916	16917	36043;36044	36043					0.062012896308715426
LYVPHLLLC	9	Unmodified	_LYVPHLLLC_					0	0	0		nc|ENSG00000106113|Q13324-2|CRHR2	nc|ENSG00000106113|Q13324-2|CRHR2	nc|ENSG00000106113|Q13324-2|CRHR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.32421875	2	535.806988	1069.59942	0.29631	0.00015877	-4.2736	-0.0022898	-3.9773	-0.0021311	536.3066160426183	67.088	0.67213	67.166	66.789	67.461	0.078041					29	23	2	0	0	0	0.19319	1	16762	16762		28.173	7.302	1	94916			29274	12639	16917	16918	36045	36045					0.06740751990309946
LYVPIGQSI	9	Unmodified	_LYVPIGQSI_					0	0	0			REV__ENSG00000169299|ENST00000381967|PGM2	REV__ENSG00000169299|ENST00000381967|PGM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.286865234375	2	495.286943	988.559333	0.56698	0.00028082	-0.35232	-0.0001745	0.21466	0.00010632	495.2867351342892	83.445	0.54491	83.429	83.267	83.812	-0.016823					36	22	2	0	0	0	0.11517	1	21865	21865		36.044	0	1	175180	+		29275	17509	16918	16919	36046	36046					0.0645952859136969
LYVPSYLGN	9	Unmodified	_LYVPSYLGN_					0	0	0			REV__nc|ENSG00000290445|Q5T2Q4|CCNYL2	REV__nc|ENSG00000290445|Q5T2Q4|CCNYL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2677001953125	2	513.26875	1024.52295	0.36823	0.000189	-2.3968	-0.0012302	-2.0285	-0.0010412	513.2677665715803	68.503	1.277	68.503	68.15	69.428	0					71	46	2	0	0	0	0.12846	1	17303	17303		34.102	0	1	806800	+		29276	23248	16919	16920	36047	36047					0.011666516946661432
LYVPSYLGN	9	Unmodified	_LYVPSYLGN_					0	0	0			REV__nc|ENSG00000290445|Q5T2Q4|CCNYL2	REV__nc|ENSG00000290445|Q5T2Q4|CCNYL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	513.26875	1024.52295	0.22497	0.00011547	-2.5759	-0.0013222	-2.351	-0.0012067	513.2676729216754	68.496	1.2656	68.568	68.106	69.372	0.071938	0.021902	-0.00012924	NaN	34.102	76	46	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	916890	+		29277	23248	16919	16920							0.011666516946661432
LYVRFQEE	8	Unmodified	_LYVRFQEE_					0	0	0			REV__ENSG00000138759|ENST00000512123|FRAS1	REV__ENSG00000138759|ENST00000512123|FRAS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2591552734375	2	542.277106	1082.53966	1.0965	0.00059463	1.6034	0.00086946	2.6999	0.0014641	542.2775873106249	56.135	0.77763	56.135	55.935	56.713	0					41	28	2	0	0	0	0.34092	1	13620	13620		13.508	4.1248	1	1128500	+		29278	15953	16920	16921	36048	36048					0.001691525806336358
LYVRVQNGF	9	Unmodified	_LYVRVQNGF_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3134765625	2	548.300916	1094.58728	0.69555	0.00038137	-1.8628	-0.0010214	-1.1673	-0.00064002	548.299662516002	58.708	0.8349	58.694	58.278	59.113	-0.014271					63	29	3	0	0	0	0.11517	1	14295	14295		36.044	11.37	1	783900			29279	7328	16921	16922	36049	36049					0.0437685157148735
LYVSGSVNYL	10	Unmodified	_LYVSGSVNYL_					0	0	0			REV__nc|ENSG00000076706|P43121-2|MCAM	REV__nc|ENSG00000076706|P43121-2|MCAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7926025390625	2	557.792589	1113.57063	0.12839	7.1612E-05	1.0738	0.00059896	1.2022	0.00067057	557.7925580265562	69.489	0.84959	69.489	69.123	69.972	0					68	30	3	0	0	0	0.20505	1	17548	17548		47.749	13.347	1	782630	+		29280	22899	16922	16923	36050	36050					0.01838305894852965
LYVSGSVNYL	10	Unmodified	_LYVSGSVNYL_					0	0	0			REV__nc|ENSG00000076706|P43121-2|MCAM	REV__nc|ENSG00000076706|P43121-2|MCAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.8057250976562	2	557.792589	1113.57063	0.16195	9.0334E-05	1.1935	0.0006657	1.3554	0.00075603	557.7924610389477	69.475	1.5237	69.453	68.972	70.496	-0.022087					84	54	2	0	0	0	0.19885	4	17509	17509;17530;17557;17632		32.786	5.5625	1	914610	+		29281	22899	16922	16923	36051;36052;36053;36054	36051					0.01838305894852965
LYVTNSHLT	9	Unmodified	_LYVTNSHLT_					0	0	0		nc|ENSG00000118733|Q96PB7-5|OLFM3;ENSG00000118733|ENST00000370103|OLFM3;nc|ENSG00000118733|Q96PB7|OLFM3	nc|ENSG00000118733|Q96PB7-5|OLFM3	nc|ENSG00000118733|Q96PB7-5|OLFM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.821533203125	2	524.277106	1046.53966	0.46662	0.00024464	0.36526	0.0001915	0.83188	0.00043614	524.2773554119759	51.622	0.37517	51.632	51.428	51.803	0.0095634					19	13	2	0	0	0	0.2451	1	12027	12027		10.824	0	1	255270			29282	2842	16923	16924	36055	36055					0.01825152580613576
LYVTTWLE	8	Unmodified	_LYVTTWLE_					0	0	0		ENST00000371587.8_1_9:139982734-139982812:+|nuORF	ENST00000371587.8_1_9:139982734-139982812:+|nuORF	ENST00000371587.8_1_9:139982734-139982812:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2953491210938	2	512.771126	1023.5277	0.25072	0.00012856	-0.12413	-6.365E-05	0.12659	6.491E-05	512.7714382853882	71.3	0.25243	71.361	71.21	71.463	0.060783					12	8	2	0	0	0	0.27422	1	18116	18116		40.449	0.49126	1	184380			29283	9825	16924	16925	36056	36056					0.016875358374363714
LYVVFPFLS	9	Unmodified	_LYVVFPFLS_					0	0	0			REV__ENST00000482537.1_1_9:77676466-77681784:-|nuORF	REV__ENST00000482537.1_1_9:77676466-77681784:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8078002929688	2	542.807511	1083.60047	0.75743	0.00041114	0.28766	0.00015615	1.0451	0.00056728	542.8075322403537	78.36	2.9728	78.419	77.513	80.486	0.058159					343	116	4	0	0	0	0.29662	1	20379	20379		9.3474	0.75416	1	1386000	+		29284	21501	16925	16926	36057	36057					0.062012896308715426
LYVVFPFLS	9	Unmodified	_LYVVFPFLS_					0	0	0			REV__ENST00000482537.1_1_9:77676466-77681784:-|nuORF	REV__ENST00000482537.1_1_9:77676466-77681784:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2792358398438	2	542.807511	1083.60047	0.37711	0.0002047	0.60731	0.00032965	0.98442	0.00053435	542.8074841441646	76.352	0.9566	76.405	76.161	77.118	0.053413					68	33	3	0	0	0	0.25811	1	19817	19817		5.2307	5.2307	1	335750	+		29285	21501	16925	16926	36058	36058					0.062012896308715426
LYVVGGHDAP	10	Unmodified	_LYVVGGHDAP_					0	0	0		ENSG00000102271|ENST00000373119|KLHL4;nc|ENSG00000102271|Q9C0H6-2|KLHL4	ENSG00000102271|ENST00000373119|KLHL4	ENSG00000102271|ENST00000373119|KLHL4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2525634765625	2	514.263999	1026.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.141	1	21.088	20.588	21.588	-0.05291								0	0	0	0.36787	1	2750	2750		7.2892	3.3448	1				29286	1759	16926	16927	36059	36059					0.001248834091484241
LYVVGSAEDV	10	Unmodified	_LYVVGSAEDV_					0	0	0			REV__PLXNB2|p.T215Sfs*175|1|0.17|ENSG00000196576|chr22:50289938-50289941|TGTG/-|frameshift_variant	REV__PLXNB2|p.T215Sfs*175|1|0.17|ENSG00000196576|chr22:50289938-50289941|TGTG/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.28662109375	2	526.268947	1050.52334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.465	1	78.465	77.965	78.965	0								0	0	0	0.35216	1	20302	20302		13.906	1.3745	1		+		29287	18663	16927	16928	36060	36060					0.00010026623863268469
LYVVSDSLGI	10	Unmodified	_LYVVSDSLGI_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2952270507812	2	533.294965	1064.57538	0.59644	0.00031808	0.71743	0.0003826	1.3139	0.00070068	533.2952258717031	36.183	0.76752	36.183	35.932	36.7	0					52	27	3	0	0	0	0.31867	1	7311	7311		18.146	0.011366	1	951010	+		29288	18847	16928	16929	36061	36061					0.04567190037619184
LYVYEYLLH	9	Unmodified	_LYVYEYLLH_					0	0	0		ENST00000598159.6_1_19:18538161-18542842:+|nuORF;nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000130511|Q9BWG4-2|SSBP4;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000130511|ENST00000270061|SSBP4;ENSG00000157216|ENST00000610401|SSBP3	ENST00000598159.6_1_19:18538161-18542842:+|nuORF	ENST00000598159.6_1_19:18538161-18542842:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.819091796875	2	606.818607	1211.62266	0.88125	0.00053476	-1.4711	-0.00089268	-0.58982	-0.00035792	606.8183783879365	77.931	0.83378	77.931	77.555	78.389	0					88	30	4	0	0	0	0.30166	1	20173	20173		8.5933	0.68312	1	490850			29289	3480	16929	16930	36062	36062					0.025314693086102125
LYVYEYLLH	9	Unmodified	_LYVYEYLLH_					0	0	0		ENST00000598159.6_1_19:18538161-18542842:+|nuORF;nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000130511|Q9BWG4-2|SSBP4;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000130511|ENST00000270061|SSBP4;ENSG00000157216|ENST00000610401|SSBP3	ENST00000598159.6_1_19:18538161-18542842:+|nuORF	ENST00000598159.6_1_19:18538161-18542842:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8187866210938	2	606.818607	1211.62266	0.8121	0.0004928	-1.3591	-0.00082473	-0.54701	-0.00033194	606.818386105817	77.91	1.215	77.966	77.597	78.812	0.05542					110	44	4	0	0	0	0.30166	1	20141	20141		8.5933	0.68312	1	458970			29290	3480	16929	16930	36063	36063					0.025314693086102125
LYVYEYLLH	9	Unmodified	_LYVYEYLLH_					0	0	0		ENST00000598159.6_1_19:18538161-18542842:+|nuORF;nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000130511|Q9BWG4-2|SSBP4;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000130511|ENST00000270061|SSBP4;ENSG00000157216|ENST00000610401|SSBP3	ENST00000598159.6_1_19:18538161-18542842:+|nuORF	ENST00000598159.6_1_19:18538161-18542842:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	606.818607	1211.62266	0.85194	0.00051698	-1.3687	-0.00083058	-0.5168	-0.0003136	606.8183219573647	78.068	0.93199	78.038	77.6	78.532	-0.030434	0.059861	3.0582E-05	NaN	8.5933	99	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535990			29291	3480	16929	16930							0.025314693086102125
LYWDPATCK	9	Unmodified	_LYWDPATCK_					0	0	0		nc|ENSG00000125746|O95834-3|EML2;nc|ENSG00000125746|O95834-2|EML2;ENSG00000125746|ENST00000245925|EML2	nc|ENSG00000125746|O95834-3|EML2	nc|ENSG00000125746|O95834-3|EML2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7605590820312	2	548.760235	1095.50592	0.61306	0.00033642	0.82065	0.00045034	1.4337	0.00078676	548.7605859453043	44.218	0.93179	44.287	43.99	44.922	0.068573					59	34	3	0	0	0	0.30166	1	9753	9753		8.5933	8.5933	1	1429900			29292	12687	16930	16931	36064	36064					-0.038015921827991406
LYWETNSL	8	Unmodified	_LYWETNSL_					0	0	0		ENSG00000127249|ENST00000342695|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2855834960938	2	513.250557	1024.48656	0.71004	0.00036443	-1.5482	-0.00079462	-0.83817	-0.00043019	513.7505598399541	60.63	0.13602	60.621	60.572	60.708	-0.0094566					5	4	2	0	0	0	0.33245	1	14832	14832		19.439	7.7987	1	261700			29293	3310	16931	16932	36065	36065					-0.024702252020460946
LYWHPGLSK	9	Unmodified	_LYWHPGLSK_					0	0	0		ENST00000483835.5_1_11:5685320-5686489:-|nuORF	ENST00000483835.5_1_11:5685320-5686489:-|nuORF	ENST00000483835.5_1_11:5685320-5686489:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.7979125976562	2	550.798009	1099.58147	0.20824	0.0001147	-0.73228	-0.00040334	-0.52404	-0.00028864	550.7979091526198	25.3	0.64809	25.244	24.972	25.62	-0.055931					39	22	3	0	0	0	0.3208	1	4018	4018		5.7319	0.97584	1	116220			29294	11068	16932	16933	36066	36066					0.035657530597973164
LYWINLVF	8	Unmodified	_LYWINLVF_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.3101196289062	2	534.299853	1066.58515	0.53565	0.0002862	-2.1641	-0.0011563	-1.6284	-0.00087005	534.2985709911298	68.505	0.26163	68.505	68.381	68.643	0					11	9	2	0	0	0	0.33916	1	17266	17266		26.341	3.1929	1	221540			29295	7910	16933	16934	36067	36067					0.054524228336504166
LYWINLVF	8	Unmodified	_LYWINLVF_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2900390625	2	534.299853	1066.58515	0.54426	0.0002908	-2.0121	-0.0010751	-1.4678	-0.00078426	534.2985995339031	63.355	0.43817	63.355	63.143	63.581	0					22	15	2	0	0	0	0.32778	1	15638	15638		14.582	0	1	308300			29296	7910	16933	16934	36068	36068					0.054524228336504166
LYWLTSIP	8	Unmodified	_LYWLTSIP_					0	0	0			REV__nc|ENSG00000162746|Q6BAA4-3|FCRLB	REV__nc|ENSG00000162746|Q6BAA4-3|FCRLB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.81170654296875	2	496.776211	991.537869	0.2795	0.00013885	-1.3539	-0.00067257	-1.0744	-0.00053373	496.7757879956171	76.317	0.70454	76.317	76.021	76.725	0					36	24	2	0	0	0	0.30503	1	19634	19634		30.225	8.4782	1	238500	+		29297	17005	16934	16935	36069	36069					0.04176143562665402
LYWLTSIP	8	Unmodified	_LYWLTSIP_					0	0	0			REV__nc|ENSG00000162746|Q6BAA4-3|FCRLB	REV__nc|ENSG00000162746|Q6BAA4-3|FCRLB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.811279296875	2	496.776211	991.537869	0.23123	0.00011487	-1.6621	-0.00082567	-1.4308	-0.00071081	496.77551760549665	76.24	0.62696	76.293	75.992	76.619	0.053413					36	21	2	0	0	0	0.30503	1	19618	19618		30.225	9.7712	1	277690	+		29298	17005	16934	16935	36070	36070					0.04176143562665402
LYWLTSIP	8	Unmodified	_LYWLTSIP_					0	0	0			REV__nc|ENSG00000162746|Q6BAA4-3|FCRLB	REV__nc|ENSG00000162746|Q6BAA4-3|FCRLB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.811279296875	2	496.776211	991.537869	0.43515	0.00021617	-1.7941	-0.00089127	-1.359	-0.0006751	496.7757565984054	76.381	0.60591	76.349	76.02	76.625	-0.031479					37	21	2	0	0	0	0.31934	1	19636	19636		24.674	7.7316	1	257980	+		29299	17005	16934	16935	36071	36071					0.04176143562665402
LYWLVFIV	8	Unmodified	_LYWLVFIV_					0	0	0		nc|ENSG00000173585|P51686-2|CCR9;ENSG00000173585|ENST00000357632|CCR9	nc|ENSG00000173585|P51686-2|CCR9	nc|ENSG00000173585|P51686-2|CCR9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2913208007812	2	526.812596	1051.61064	0.15748	8.2963E-05	3.2019	0.0016868	3.3593	0.0017697	527.3159118312891	12.505	0.31867	12.409	12.295	12.614	-0.096607					14	10	2	0	0	0	0.34434	1	135	135		0.79363	0	1	30670			29300	6732	16935	16936	36072	36072					0.08689897356089205
LYWLVFIV	8	Unmodified	_LYWLVFIV_					0	0	0		nc|ENSG00000173585|P51686-2|CCR9;ENSG00000173585|ENST00000357632|CCR9	nc|ENSG00000173585|P51686-2|CCR9	nc|ENSG00000173585|P51686-2|CCR9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	526.812596	1051.61064	0.061783	3.2548E-05	2.572	0.001355	2.6338	0.0013875	526.8141991078913	12.609	0.26306	12.541	12.377	12.64	-0.067495	0.066252	-0.00050989	NaN	0.79363	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21568			29301	6732	16935	16936							0.08689897356089205
LYWRQWNSL	9	Unmodified	_LYWRQWNSL_					0	0	0		ENST00000416538.5_1_2:136511720-136511816:+|nuORF	ENST00000416538.5_1_2:136511720-136511816:+|nuORF	ENST00000416538.5_1_2:136511720-136511816:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.91021728515625	3	422.552374	1264.63529	0.12825	5.4192E-05	0.23586	9.9662E-05	0.3641	0.00015385	422.5525601370059	34.127	0.53193	34.127	33.94	34.472	0					28	18	2	0	0	0	0.25527	1	6694	6694		8.7454	0	1	104440			29302	10320	16936	16937	36073	36073					0.01355925491520793
LYWSHPRKF	9	Unmodified	_LYWSHPRKF_					0	0	0		ENST00000557367.2_1_14:50053001-50053064:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2315673828125	3	411.889097	1232.64546	0.025531	1.0516E-05	0.012231	5.0377E-06	0.037761	1.5553E-05	411.8890293538509	34.176	0.85969	34.176	33.865	34.725	0					61	30	4	0	0	0	0.2141	2	6710	6710;6769		21.59	12.046	1	363800			29303	8362	16937	16938	36074;36075	36074					0.03844533216738455
LYWSHPRKF	9	Unmodified	_LYWSHPRKF_					0	0	0		ENST00000557367.2_1_14:50053001-50053064:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2317810058594	3	411.889097	1232.64546	0.62503	0.00025744	-0.25923	-0.00010678	0.3658	0.00015067	411.88890422384225	33.901	0.77998	33.967	33.733	34.513	0.06636					57	27	3	0	0	0	0.21538	1	6617	6617		19.626	5.2206	1	319630			29304	8362	16937	16938	36076	36076					0.03844533216738455
LYWSHPRKF	9	Unmodified	_LYWSHPRKF_					0	0	0		ENST00000557367.2_1_14:50053001-50053064:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2315673828125	3	411.889097	1232.64546	0.025669	1.0573E-05	0.33289	0.00013711	0.35856	0.00014769	411.88908827939423	33.933	0.69475	34	33.711	34.406	0.066704					55	24	3	0	0	0	0.2141	2	6626	6626;6695		21.59	1.9642	1	436030			29305	8362	16937	16938	36077;36078	36077					0.03844533216738455
LYYAPWCGF	9	Unmodified	_LYYAPWCGF_					0	0	0		nc|ENSG00000153066|Q6PKC3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.8137817382812	2	560.252046	1118.48954	0.58274	0.00032648	-1.0611	-0.00059451	-0.4784	-0.00026802	560.2515370149616	50.07	0.63979	50.09	49.825	50.465	0.020695					39	23	2	0	0	0	0.25291	1	11626	11626		5.2307	0	1	349990			29306	5057	16938	16939	36079	36079					-0.06496673348897275
LYYDAIWHF	9	Unmodified	_LYYDAIWHF_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.2952270507812	2	614.295299	1226.57605	0.49251	0.00030254	-0.25914	-0.00015919	0.23336	0.00014335	614.2950854290198	78.741	1.3807	78.741	78.169	79.55	0					171	54	5	0	0	0	0.00033206	5	20403	20358;20403;20451;20499;20557		131.3	101.07	1	2153200			29307	12813	16939	16940	36080;36081;36082;36083;36084	36081					-0.02817970522687574
LYYDAIWHF	9	Unmodified	_LYYDAIWHF_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	614.2953491210938	2	614.295299	1226.57605	0.41756	0.0002565	-0.17952	-0.00011028	0.23804	0.00014623	614.2951224030664	78.684	1.1962	78.742	78.47	79.666	0.058151					167	50	5	0	0	0	0.00097449	2	20378	20332;20378		123.1	99.076	1	2248500			29308	12813	16939	16940	36085;36086	36086					-0.02817970522687574
LYYDAIWHF	9	Unmodified	_LYYDAIWHF_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	614.2952880859375	2	614.295299	1226.57605	0.55935	0.0003436	-0.22125	-0.00013591	0.33809	0.00020769	614.2950795993796	78.837	1.1405	78.806	78.456	79.596	-0.030434					145	46	4	0	0	0	0.0014051	3	20361	20361;20408;20448		117.6	99.464	1	2274800			29309	12813	16939	16940	36087;36088;36089	36087					-0.02817970522687574
LYYDRVEL	8	Unmodified	_LYYDRVEL_					0	0	0			REV__nc|ENSG00000121446|A5PLK6-6|RGSL1	REV__nc|ENSG00000121446|A5PLK6-6|RGSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2901000976562	2	535.779482	1069.54441	0.38341	0.00020542	-0.92261	-0.00049432	-0.53921	-0.0002889	535.7789396524905	59.357	0.48455	59.357	59.024	59.508	0					21	16	2	0	0	0	0.37937	1	14453	14453		21.747	2.3076	1	179320	+		29310	15121	16940	16941	36090	36090					0.0124203672337444
LYYFLMQYP	9	Unmodified	_LYYFLMQYP_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000407450.1_1_6:118774123-118774444:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.86376953125	2	619.301736	1236.58892	0.49302	0.00030533	-0.21982	-0.00013613	0.27321	0.0001692	619.301805038497	54.049	0.64572	54.049	53.595	54.24	0					31	23	2	0	0	0	0.25291	1	12754	12754		9.3474	0	1	251490			29311	1364	16941	16942	36091	36091					-0.0199127545479314
LYYGPFIVI	9	Unmodified	_LYYGPFIVI_					0	0	0		MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant;nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8078002929688	2	542.807511	1083.60047	0.93496	0.0005075	-0.0086134	-4.6754E-06	0.92634	0.00050283	542.8073887217688	78.34	3.3554	78.31	77.238	80.594	-0.030434					321	127	4	0	0	0	0.32415	1	20354	20354		5.2307	0	1	1617500			29312	5508	16942	16943	36092	36092					0.06201289630848805
LYYGPLAFMY	10	Unmodified	_LYYGPLAFMY_					0	0	0		ENSG00000236032|ENST00000641380|OR5H14	ENSG00000236032|ENST00000641380|OR5H14	ENSG00000236032|ENST00000641380|OR5H14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.8637084960938	2	619.301736	1236.58892	0.16875	0.00010451	-0.51324	-0.00031785	-0.34449	-0.00021334	619.3016131259363	53.997	0.49897	54.056	53.743	54.242	0.058994					29	18	2	0	0	0	0.31395	1	12727	12727		12.532	0.89125	1	249590			29313	8499	16943	16944	36093	36093					-0.0199127545479314
LYYHMSHYL	9	Unmodified	_LYYHMSHYL_					0	0	0			REV__nc|ENSG00000111452|Q6QNK2-2|ADGRD1	REV__nc|ENSG00000111452|Q6QNK2-2|ADGRD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.88641357421875	3	409.526948	1225.55902	0.027324	1.119E-05	-0.73714	-0.00030188	-0.70982	-0.00029069	409.526642693238	26.686	0.58975	26.647	26.29	26.879	-0.038671					27	20	2	0	0	0	0.25527	1	4475	4475		5.2969	0	1	71329	+		29314	14722	16944	16945	36094	36094					-0.04474214400102028
LYYIDRAQF	9	Unmodified	_LYYIDRAQF_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-3|VWA8	REV__nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.7938842773438	2	594.806031	1187.59751	0.36931	0.00021967	0.25713	0.00015294	0.62643	0.00037261	594.8061215988735	59.202	0.92965	59.202	58.968	59.897	0					78	32	4	0	0	0	0.19747	1	14369	14369		24.021	5.8742	1	1484400	+		29315	14331	16945	16946	36095	36095					0.011214145060193914
LYYIDRAQF	9	Unmodified	_LYYIDRAQF_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-3|VWA8	REV__nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8063354492188	2	594.806031	1187.59751	0.46716	0.00027787	0.24021	0.00014288	0.70737	0.00042075	594.806041198242	59.026	0.97506	59.118	58.849	59.824	0.091305					79	34	4	0	0	0	0.19747	2	14352	14289;14352		24.021	3.5669	1	1343900	+		29316	14331	16945	16946	36096;36097	36097					0.011214145060193914
LYYIDRAQF	9	Unmodified	_LYYIDRAQF_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-3|VWA8	REV__nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.7938232421875	2	594.806031	1187.59751	0.52327	0.00031125	0.087704	5.2167E-05	0.61098	0.00036341	594.805906692971	59.178	0.93507	59.163	58.977	59.912	-0.014267					71	32	4	0	0	0	0.19747	3	14351	14351;14396;14450		24.021	5.8742	1	1578400	+		29317	14331	16945	16946	36098;36099;36100	36098					0.011214145060193914
LYYIHRNKI	9	Unmodified	_LYYIHRNKI_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5641784667969	3	407.236385	1218.68733	0.29065	0.00011836	-0.36485	-0.00014858	-0.074203	-3.0218E-05	407.2362427437985	32.178	0.80958	32.22	31.882	32.691	0.042366					85	28	4	0	0	0	0.24471	1	6062	6062		17.113	0	1	455410			29318	3998	16946	16947	36101	36101					0.08673088905266013
LYYILSYEE	9	Unmodified	_LYYILSYEE_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.2998046875	2	596.792255	1191.56996	0.53475	0.00031913	1.1718	0.0006993	1.7065	0.0010184	596.7926503137107	58.835	0.82265	58.926	58.612	59.434	0.091305					68	28	4	0	0	0	0.25417	1	14403	14403		8.5933	0.68312	1	1088400			29319	2189	16947	16948	36102	36102					-0.01816533544865706
LYYLATTPLL	10	Unmodified	_LYYLATTPLL_					0	0	0			REV__ENSG00000007541|ENST00000321878|PIGQ	REV__ENSG00000007541|ENST00000321878|PIGQ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3369140625	2	584.336633	1166.65871	0.2694	0.00015742	0.49732	0.0002906	0.76673	0.00044803	584.3368509203517	17.547	0.50603	17.547	17.296	17.802	0					40	17	3	0	0	0	0.40992	1	1643	1643		1.6526	0.17072	1	105580	+		29320	13388	16948	16949	36103	36103					0.08204926485473152
LYYLATVL	8	Unmodified	_LYYLATVL_					0	0	0		ENST00000448810.5_1_5:131726469-131729504:+|nuORF;nc|ENSG00000197375|O76082-2|SLC22A5;ENST00000475308.1_1_5:131726319-131729961:+|nuORF;ENST00000461013.5_1_5:131719758-131729961:+|nuORF;ENSG00000197375|ENST00000245407|SLC22A5;nc|ENSG00000197375|O76082-3|SLC22A5	ENST00000448810.5_1_5:131726469-131729504:+|nuORF	ENST00000448810.5_1_5:131726469-131729504:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.761962890625	2	478.278586	954.54262	0.69407	0.00033196	-3.8363	-0.0018348	-3.1422	-0.0015029	478.27699167310305	33.913	0.35837	33.979	33.845	34.203	0.06636					18	12	2	0	0	0	0.39956	1	6668	6668		19.439	0	1	96319			29321	7957	16949	16950	36104	36104					0.0635302770541557
LYYLPEPYF	9	Unmodified	_LYYLPEPYF_					0	0	0			REV__chr1:110379356-110381652|316|16.41|0.83|4.31|-|0|SLC16A4,SLC16A4|2	REV__chr1:110379356-110381652|316|16.41|0.83|4.31|-|0|SLC16A4,SLC16A4|2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.303466796875	2	602.799883	1203.58521	0.57607	0.00034726	-0.45354	-0.0002734	0.12253	7.3862E-05	602.7971400113458	63.554	1.7611	63.554	62.369	64.13	0					133	64	3	0	0	0	0.21303	1	15883	15883		21.747	0	1	810740	+		29322	13155	16950	16951	36105	36105					-0.008436219570285175
LYYMNNWDI	9	Unmodified	_LYYMNNWDI_					0	0	0		ENST00000548870.5_1_12:46760906-46761064:-|nuORF	ENST00000548870.5_1_12:46760906-46761064:-|nuORF	ENST00000548870.5_1_12:46760906-46761064:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.220458984375	3	411.186592	1230.53795	0.12684	5.2156E-05	-1.4062	-0.00057821	-1.2794	-0.00052605	411.1860325189752	39.577	0.38772	39.67	39.416	39.803	0.09267					15	13	2	0	0	0	0.25526	1	8359	8359		4.897	0	1	96374			29323	11780	16951	16952	36106	36106					-0.06810224499645301
LYYNTITNF	9	Unmodified	_LYYNTITNF_					0	0	0		nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3286743164062	2	574.784764	1147.55498	0.26369	0.00015157	0.2274	0.0001307	0.49109	0.00028227	574.7843392949351	68.955	0.49341	68.955	68.736	69.229	0					38	17	3	0	0	0	0.14646	1	17445	17445		43.772	17.504	1	231420			29324	962	16952	16953	36107	36107					-0.012899806222094412
LYYNTITNF	9	Unmodified	_LYYNTITNF_					0	0	0		nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3370971679688	2	574.784764	1147.55498	0.46033	0.00026459	-0.17135	-9.8488E-05	0.28899	0.0001661	574.784342078682	68.862	0.4797	68.934	68.758	69.237	0.071938					30	17	2	0	0	0	0.067763	1	17362	17362		59.368	17.529	1	223800			29325	962	16952	16953	36108	36108					-0.012899806222094412
LYYSYKELLL	10	Unmodified	_LYYSYKELLL_					0	0	0			REV__nc|ENSG00000187021|P54315-2|PNLIPRP1	REV__nc|ENSG00000187021|P54315-2|PNLIPRP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.5760803222656	3	435.576073	1303.70639	0.065677	2.8607E-05	0.042217	1.8389E-05	0.10789	4.6996E-05	435.5761078004557	38.054	0.72109	38.145	37.821	38.542	0.090881					67	25	3	0	0	0	0.38522	1	7915	7915		6.1918	1.1443	1	1133000	+		29326	23141	16953	16954	36109	36109					0.06668580685663983
LYYSYRGYF	9	Unmodified	_LYYSYRGYF_					0	0	0		CON__Q28085	CON__Q28085	CON__Q28085	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.2926025390625	2	616.292756	1230.57096	-0.0087746	-5.4077E-06	-0.15811	-9.7441E-05	-0.16688	-0.00010285	616.292728382437	76.293	0.75886	76.347	76.161	76.92	0.053413					47	26	2	0	0	0	0.07432	1	19641	19641		43.858	0.085901	1	1151000		+	29327	225	16954	16955	36110	36110					-0.03510274385280354
LYYVCEFPF	9	Carbamidomethyl (C)	_LYYVC(Carbamidomethyl (C))EFPF_	LYYVC(1)EFPF		LYYVC(44)EFPF		0	1	0		ENSG00000105472|ENST00000250340|CLEC11A	ENSG00000105472|ENST00000250340|CLEC11A	ENSG00000105472|ENST00000250340|CLEC11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.2840576171875	2	619.283543	1236.55253	0.51507	0.00031898	0.56052	0.00034712	1.0756	0.0006661	619.283406975601	54.369	0.46257	54.369	54.188	54.651	0					29	16	3	0	0	0	0.072844	1	12922	12922		44.407	14.566	1	506590			29328	1984	16955	16956	36111	36111	1				-0.05628152351505378
LYYVCEFPF	9	Carbamidomethyl (C)	_LYYVC(Carbamidomethyl (C))EFPF_					0	1	0		ENSG00000105472|ENST00000250340|CLEC11A	ENSG00000105472|ENST00000250340|CLEC11A	ENSG00000105472|ENST00000250340|CLEC11A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	619.283543	1236.55253	0.34734	0.0002151	0.63184	0.00039129	0.97917	0.00060639	619.283562803737	54.314	0.47359	54.377	54.115	54.589	0.063202	-0.097528	0.00021135	NaN	44.407	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465090			29329	1984	16955	16956			1				-0.05628152351505378
LYYVKFPLV	9	Unmodified	_LYYVKFPLV_					0	0	0			REV__ENST00000575733.5_1_16:3493866-3497565:+|nuORF	REV__ENST00000575733.5_1_16:3493866-3497565:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8277587890625	2	571.336436	1140.65832	-0.18815	-0.00010749	-0.98228	-0.00056121	-1.1704	-0.00066871	571.3351868604227	12.68	0.24278	12.613	12.491	12.734	-0.067496					20	7	4	0	0	0	0.26251	1	162	162		0.6015	0	1	47633	+		29330	22445	16956	16957	36112	36112					0.09361551556276027
LYYVKFPLV	9	Unmodified	_LYYVKFPLV_					0	0	0			REV__ENST00000575733.5_1_16:3493866-3497565:+|nuORF	REV__ENST00000575733.5_1_16:3493866-3497565:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	571.336436	1140.65832	-0.11078	-6.3292E-05	-2.2674	-0.0012955	-2.3782	-0.0013588	571.334751136349	12.639	0.22491	12.639	12.526	12.751	0	0.040384	-0.00041849	NaN	0.6015	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44587	+		29331	22445	16956	16957							0.09361551556276027
LYYYPNNL	8	Unmodified	_LYYYPNNL_					0	0	0			REV__ENSG00000135336|ENST00000392844|ORC3	REV__ENSG00000135336|ENST00000392844|ORC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.840087890625	2	530.260925	1058.5073	0.49369	0.00026178	-2.8462	-0.0015092	-2.3525	-0.0012475	530.2610052350748	67.55	0.17145	67.628	67.515	67.687	0.078041					7	5	2	0	0	0	0.34185	1	16935	16935		10.183	0	1	58165	+		29332	15734	16957	16958	36113	36113					-0.019616348223962632
LYYYPNNL	8	Unmodified	_LYYYPNNL_					0	0	0			REV__ENSG00000135336|ENST00000392844|ORC3	REV__ENSG00000135336|ENST00000392844|ORC3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	530.260925	1058.5073	0.34762	0.00018433	-0.4236	-0.00022462	-0.075981	-4.029E-05	530.2608205174454	67.428	0.16058	67.411	67.262	67.423	-0.016296	-0.10842	9.6766E-05	NaN	10.183	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69263	+		29333	15734	16957	16958							-0.019616348223962632
MAEDSSMEIPF	11	Unmodified	_MAEDSSMEIPF_					0	0	0			REV__nc|ENSG00000134324|Q14693-6|LPIN1	REV__nc|ENSG00000134324|Q14693-6|LPIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.8747253417969	3	419.510635	1255.51008	-0.13716	-5.7539E-05	2.0453	0.00085803	1.9082	0.00080049	419.5116266553842	30.982	0.45083	30.982	30.781	31.231	0					24	15	2	0	0	0	0.33202	1	5787	5787		2.8433	2.1456	1	116060	+		29334	15667	16958	16959	36114	36114					-0.10745915542042894
MAFAHTECLIL	11	Unmodified	_MAFAHTECLIL_					0	0	0		ENSG00000221836|ENST00000641693|OR2A5	ENSG00000221836|ENST00000641693|OR2A5	ENSG00000221836|ENST00000641693|OR2A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.8095092773438	2	624.809402	1247.60425	0.058217	3.6375E-05	-0.030727	-1.9199E-05	0.02749	1.7176E-05	624.8094663413733	68.592	1.3591	68.664	68.106	69.465	0.071938					111	42	3	0	0	0	0.29431	1	17237	17237		22.736	3.3743	1	2843600			29335	8422	16959	16960	36115	36115					-0.009647319292298562
MAFLLPLI	8	Oxidation (M)	_M(Oxidation (M))AFLLPLI_		M(1)AFLLPLI		M(77)AFLLPLI	0	0	1		nc|ENSG00000153029|Q95460-3|MR1;nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1;ENST00000486453.1_1_1:181003143-181018564:+|nuORF;nc|ENSG00000153029|Q95460-5|MR1;nc|ENSG00000153029|Q95460-4|MR1;ENST00000438435.6_1_1:181003152-181006146:+|nuORF	nc|ENSG00000153029|Q95460-3|MR1	nc|ENSG00000153029|Q95460-3|MR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2773132324219	2	467.277532	932.540511	-0.20981	-9.804E-05	0.13842	6.4679E-05	-0.071393	-3.336E-05	467.2773961578591	95.671	2.232	95.671	94.896	97.128	0					470	215	3	0	0	0	0.052153	3	25520	25520;25556;25595		77.196	22.264	1	2522300			29336	5051	16960	16961	36116;36117;36118	36116		622			0.07154275695972956
MAFLLPLI	8	Oxidation (M)	_M(Oxidation (M))AFLLPLI_		M(1)AFLLPLI		M(77)AFLLPLI	0	0	1		nc|ENSG00000153029|Q95460-3|MR1;nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1;ENST00000486453.1_1_1:181003143-181018564:+|nuORF;nc|ENSG00000153029|Q95460-5|MR1;nc|ENSG00000153029|Q95460-4|MR1;ENST00000438435.6_1_1:181003152-181006146:+|nuORF	nc|ENSG00000153029|Q95460-3|MR1	nc|ENSG00000153029|Q95460-3|MR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2773742675781	2	467.277532	932.540511	-0.054565	-2.5497E-05	-0.11196	-5.2314E-05	-0.16652	-7.7811E-05	467.27739302920287	95.533	1.5098	95.61	95.308	96.817	0.077408					251	140	2	0	0	0	0.052153	3	25496	25496;25534;25568		77.196	30.275	1	4881200			29337	5051	16960	16961	36119;36120;36121	36119		622			0.07154275695972956
MAFLLPLI	8	Oxidation (M)	_M(Oxidation (M))AFLLPLI_		M(1)AFLLPLI		M(92)AFLLPLI	0	0	1		nc|ENSG00000153029|Q95460-3|MR1;nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1;ENST00000486453.1_1_1:181003143-181018564:+|nuORF;nc|ENSG00000153029|Q95460-5|MR1;nc|ENSG00000153029|Q95460-4|MR1;ENST00000438435.6_1_1:181003152-181006146:+|nuORF	nc|ENSG00000153029|Q95460-3|MR1	nc|ENSG00000153029|Q95460-3|MR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2774963378906	2	467.277532	932.540511	0.26082	0.00012187	-0.27339	-0.00012775	-0.012577	-5.8771E-06	467.2772434497092	95.665	2.4123	95.661	94.451	96.864	-0.0038223					501	230	3	0	0	0	0.027502	4	25569	25533;25569;25605;25642		91.927	35.386	1	4489100			29338	5051	16960	16961	36122;36123;36124;36125	36123		622			0.07154275695972956
MAFMTIMI	8	3 Oxidation (M)	_M(Oxidation (M))AFM(Oxidation (M))TIM(Oxidation (M))I_		M(1)AFM(1)TIM(1)I		M(60)AFM(60)TIM(60)I	0	0	3		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.2265625	2	503.226325	1004.4381	0.5008	0.00025202	-0.64993	-0.00032706	-0.14912	-7.5043E-05	503.2262876380211	64.652	0.97975	64.652	64.288	65.268	0					69	35	4	0	0	0	0.19042	1	16055	16055		59.795	31.622	1	931880			29339	5557	16961	16962	36126	36126		670;671;672			-0.06394501429440425
MAFMTIMI	8	3 Oxidation (M)	_M(Oxidation (M))AFM(Oxidation (M))TIM(Oxidation (M))I_		M(1)AFM(1)TIM(1)I		M(50)AFM(50)TIM(50)I	0	0	3		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.2266845703125	2	503.226325	1004.4381	0.48211	0.00024261	-0.36	-0.00018116	0.1221	6.1446E-05	503.2263046690151	64.498	0.85473	64.591	64.284	65.139	0.092888					83	31	4	0	0	0	0.16192	2	16027	16027;16075		49.669	21.496	1	932840			29340	5557	16961	16962	36127;36128	36127		670;671;672			-0.06394501429440425
MAFMTIMI	8	3 Oxidation (M)	_M(Oxidation (M))AFM(Oxidation (M))TIM(Oxidation (M))I_		M(1)AFM(1)TIM(1)I		M(50)AFM(50)TIM(50)I	0	0	3		ENST00000449943.5_1_11:64897669-64899838:-|nuORF;nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2265319824219	2	503.226325	1004.4381	0.45583	0.00022938	-0.10468	-5.2678E-05	0.35115	0.00017671	503.2263357459164	64.657	0.91684	64.647	64.26	65.177	-0.0095367					80	33	4	0	0	0	0.16192	2	16051	16051;16105		49.669	21.496	1	877220			29341	5557	16961	16962	36129;36130	36129		670;671;672			-0.06394501429440425
MAGLGGRW	8	Unmodified	_MAGLGGRW_					0	0	0		ENST00000538839.5_2_1:19198632-19198896:-|nuORF	ENST00000538839.5_2_1:19198632-19198896:-|nuORF	ENST00000538839.5_2_1:19198632-19198896:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.20660400390625	2	424.215798	846.417042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.074	1	35.149	34.649	35.649	0.075306								0	0	0	0.36961	1	6985	6985		5.7604	0	1				29342	11703	16962	16963	36131	36131					-0.012309626318028677
MAHYITFLC	9	Unmodified	_MAHYITFLC_					0	0	0		nc|ENSG00000124749|Q96P44-3|COL21A1;ENSG00000124749|ENST00000244728|COL21A1	nc|ENSG00000124749|Q96P44-3|COL21A1	nc|ENSG00000124749|Q96P44-3|COL21A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3132934570312	2	549.759181	1097.50381	0.56391	0.00031001	0.60807	0.00033429	1.172	0.0006443	549.7595853949362	76.372	0.99919	76.34	76.02	77.019	-0.031487					48	36	2	0	0	0	0.23783	1	19705	19705		18.135	6.4947	1	191230			29343	3178	16963	16964	36132	36132					-0.04104344192251119
MAIKVLEI	8	Oxidation (M)	_M(Oxidation (M))AIKVLEI_		M(1)AIKVLEI		M(61)AIKVLEI	0	0	1		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7778015136719	2	466.777896	931.54124	0.10603	4.9493E-05	-0.36431	-0.00017005	-0.25828	-0.00012056	466.7775968772747	53.237	0.87362	53.237	52.824	53.698	0					56	32	2	0	0	0	0.095164	1	12565	12565		61.357	6.5839	1	755160			29344	273	16964	16965	36133	36133		16			0.07273070345013366
MAIKVLEI	8	Oxidation (M)	_M(Oxidation (M))AIKVLEI_		M(1)AIKVLEI		M(71)AIKVLEI	0	0	1		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.77764892578125	2	466.777896	931.54124	0.24982	0.00011661	-0.67237	-0.00031385	-0.42255	-0.00019724	466.77743969436193	53.23	0.70612	53.286	52.854	53.56	0.056255					47	25	2	0	0	0	0.064917	2	12558	12534;12558		71.134	16.36	1	851150			29345	273	16964	16965	36134;36135	36135		16			0.07273070345013366
MAIKVLEI	8	Oxidation (M)	_M(Oxidation (M))AIKVLEI_		M(1)AIKVLEI		M(71)AIKVLEI	0	0	1		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7779541015625	2	466.777896	931.54124	0.27517	0.00012844	-0.46041	-0.00021491	-0.18525	-8.6469E-05	466.77757291044435	53.307	0.74774	53.297	52.889	53.637	-0.0096054					50	27	2	0	0	0	0.064917	1	12588	12588		71.134	6.8973	1	935490			29346	273	16964	16965	36136	36136		16			0.07273070345013366
MAKFAVLVL	9	Unmodified	_MAKFAVLVL_					0	0	0			REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.30426025390625	2	496.304081	990.59361	0.41687	0.0002069	-0.18064	-8.9651E-05	0.23624	0.00011725	496.30387669744533	74.068	3.1764	74.068	73.191	76.367	0					302	112	4	0	0	0	0.33018	1	19529	19529		4.3292	0	1	4670700	+		29347	14663	16965	16966	36137	36137					0.0979365347861858
MAKIDRTAR	9	Unmodified	_MAKIDRTAR_					0	0	0		ENST00000586912.1_1_19:30303674-30304040:+|nuORF;nc|ENSG00000105173|P24864-2|CCNE1;nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1	ENST00000586912.1_1_19:30303674-30304040:+|nuORF	ENST00000586912.1_1_19:30303674-30304040:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8171997070312	2	531.29785	1060.58115	0.40961	0.00021762	-0.56849	-0.00030204	-0.15888	-8.4413E-05	531.2971880683037	76.392	1.3012	76.392	75.903	77.204	0					95	47	3	0	0	0	0.2719	1	19857	19857		13.042	3.6593	1	1246300			29348	1951	16966	16967	36138	36138					0.05328010068296862
MAKKDCGGSVF	11	Unmodified	_MAKKDCGGSVF_					0	0	0			REV__ENST00000559541.1_1_15:52416976-52428016:-|nuORF	REV__ENST00000559541.1_1_15:52416976-52428016:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.771728515625	2	571.770277	1141.526	0.24459	0.00013985	1.8004	0.0010294	2.045	0.0011693	571.7712720951946	80.359	2.5215	80.424	79.519	82.041	0.065102					155	107	3	0	0	0	0.44828	1	20749	20749		4.897	0.141	1	661390	+		29349	13716	16967	16968	36139	36139					-0.03910164514468306
MAKMPQMIVN	10	Unmodified	_MAKMPQMIVN_					0	0	0		ENSG00000179271|ENST00000316939|GADD45GIP1	ENSG00000179271|ENST00000316939|GADD45GIP1	ENSG00000179271|ENST00000316939|GADD45GIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7937622070312	2	581.792697	1161.57084	0.11016	6.4088E-05	0.18478	0.0001075	0.29493	0.00017159	581.7928652365708	19.051	0.87877	18.934	18.325	19.203	-0.11739					38	30	2	0	0	0	0.41085	1	2158	2158		1.4819	0.28856	1	51060			29350	7112	16968	16969	36140	36140					-0.0034805697277988656
MALAILTTV	9	Oxidation (M)	_M(Oxidation (M))ALAILTTV_		M(1)ALAILTTV		M(82)ALAILTTV	0	0	1		ENSG00000198677|ENST00000358746|SKIC3;ENST00000513232.1_1_5:94857997-94861145:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.29083251953125	2	474.775354	947.536154	0.19327	9.1758E-05	0.57288	0.00027199	0.76614	0.00036375	474.7755701606087	71.71	0.88938	71.71	71.431	72.32	0					73	31	3	0	0	0	0.012601	1	18267	18267		81.864	11.149	1	942790			29351	8100	16969	16970	36141	36141		881			0.06028766482404535
MALAILTTV	9	Oxidation (M)	_M(Oxidation (M))ALAILTTV_		M(1)ALAILTTV		M(97)ALAILTTV	0	0	1		ENSG00000198677|ENST00000358746|SKIC3;ENST00000513232.1_1_5:94857997-94861145:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.2908630371094	2	474.775354	947.536154	0.27725	0.00013163	0.52266	0.00024815	0.79991	0.00037978	474.7755534684583	71.665	0.87015	71.722	71.459	72.329	0.056572					63	31	3	0	0	0	0.0055862	1	18249	18249		97.075	29.731	1	872520			29352	8100	16969	16970	36142	36142		881			0.06028766482404535
MALLSKDH	8	Unmodified	_MALLSKDH_					0	0	0		ENSG00000116213|ENST00000270708|WRAP73;ENST00000378322.7_1_1:3547541-3547814:-|nuORF	ENSG00000116213|ENST00000270708|WRAP73	ENSG00000116213|ENST00000270708|WRAP73	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7735290527344	2	457.741845	913.469137	-0.18168	-8.3165E-05	3.3018	0.0015114	3.1201	0.0014282	457.74312350515015	12.846	0.19761	12.747	12.643	12.841	-0.099291					11	6	2	0	0	0	0.34353	1	221	221		4.756	0.81161	1	27202			29353	2714	16970	16971	36143	36143					0.0089415599129552
MALQFISALFI	11	Unmodified	_MALQFISALFI_					0	0	0			REV__nc|ENSG00000127419|Q9BSA9-2|TMEM175	REV__nc|ENSG00000127419|Q9BSA9-2|TMEM175	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.5907287597656	3	418.570265	1252.68897	-0.17142	-7.1751E-05	-0.50514	-0.00021144	-0.67656	-0.00028319	418.5700038996797	23.854	0.41562	23.854	23.643	24.058	0					23	13	2	0	0	0	0.3322	1	3625	3625		4.7159	2.2811	1	196140	+		29354	15340	16971	16972	36144	36144					0.07272961879016293
MALQFISALFI	11	Unmodified	_MALQFISALFI_					0	0	0			REV__nc|ENSG00000127419|Q9BSA9-2|TMEM175	REV__nc|ENSG00000127419|Q9BSA9-2|TMEM175	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	418.570265	1252.68897	0.18312	7.665E-05	-0.4967	-0.00020791	-0.31358	-0.00013126	418.5700350872292	24.021	0.51482	23.982	23.681	24.196	-0.038927	0.056403	2.4174E-06	NaN	13.519	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213850	+		29355	15340	16971	16972							0.07272961879016293
MAMCEYCKIE	10	Unmodified	_MAMCEYCKIE_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.73699951171875	3	407.498796	1219.47456	0.10813	4.4064E-05	0.86298	0.00035166	0.97111	0.00039573	407.49909362352554	66.34	0.8741	66.34	66.035	66.909	0					51	19	4	0	0	0	0.32137	1	16760	16760		1.7423	0.54893	1	432070			29356	4716	16972	16973	36145	36145					-0.12639992595063632
MAPRALLL	8	Oxidation (M)	_M(Oxidation (M))APRALLL_		M(1)APRALLL		M(94)APRALLL	0	0	1		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7706604003906	2	450.770406	899.526258	0.0097757	4.4066E-06	-0.85886	-0.00038715	-0.84909	-0.00038274	450.7707057502705	46.309	4.4934	46.309	45.86	50.353	0					343	162	6	0	0	0	0.026049	11	10378	10330;10378;10425;10475;10524;10570;10614;10661;10711;10761;10813		93.883	28.288	1	113360000			29357	8234	16973	16974	36146;36147;36148;36149;36150;36151;36152;36153;36154;36155;36156	36147		891			0.07247623267687686
MAPRALLL	8	Oxidation (M)	_M(Oxidation (M))APRALLL_		M(1)APRALLL		M(94)APRALLL	0	0	1		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.77069091796875	2	450.770406	899.526258	0.10705	4.8256E-05	-0.91193	-0.00041107	-0.80487	-0.00036281	450.7706499224653	46.21	4.4073	46.27	45.792	50.199	0.059837					366	163	7	0	0	0	0.026049	13	10435	10342;10385;10435;10486;10537;10586;10628;10676;10727;10777;10825;10922;10974		93.883	30.321	1	120070000			29358	8234	16973	16974	36157;36158;36159;36160;36161;36162;36163;36164;36165;36166;36167;36168;36169	36159		891			0.07247623267687686
MAPRALLL	8	Oxidation (M)	_M(Oxidation (M))APRALLL_		M(1)APRALLL		M(110)APRALLL	0	0	1		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.77069091796875	2	450.770406	899.526258	0.15594	7.0294E-05	-1.0321	-0.00046524	-0.87615	-0.00039494	450.77062630714363	46.226	4.6753	46.292	45.782	50.457	0.065048					345	171	6	0	0	0	0.016422	13	10475	10298;10340;10381;10425;10475;10519;10563;10607;10652;10704;10752;10887;11034		106.85	34.943	1	117510000			29359	8234	16973	16974	36170;36171;36172;36173;36174;36175;36176;36177;36178;36179;36180;36181;36182	36174		891			0.07247623267687686
MAPRTLLL	8	Oxidation (M)	_M(Oxidation (M))APRTLLL_		M(1)APRTLLL		M(100)APRTLLL	0	0	1		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.776123046875	2	465.775688	929.536823	0.25668	0.00011956	-1.043	-0.0004858	-0.78631	-0.00036625	465.7758021587009	45.819	2.4823	45.819	45.341	47.823	0					233	89	5	0	0	0	0.018723	7	10265	10175;10222;10265;10350;10395;10444;10549		103.75	23.576	1	31372000			29360	8321;12917	16974	16975	36183;36184;36185;36186;36187;36188;36189	36185		899;986			0.06923605922122533
MAPRTLLL	8	Oxidation (M)	_M(Oxidation (M))APRTLLL_		M(1)APRTLLL		M(92)APRTLLL	0	0	1		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7759094238281	2	465.775688	929.536823	-0.0072346	-3.3697E-06	-0.54173	-0.00025233	-0.54897	-0.0002557	465.77586818072984	45.694	2.4253	45.754	45.282	47.708	0.059837					209	88	4	0	0	0	0.027083	7	10281	10141;10186;10237;10281;10325;10419;10472		92.491	24.419	1	32189000			29361	8321;12917	16974	16975	36190;36191;36192;36193;36194;36195;36196	36193		899;986			0.06923605922122533
MAPRTLLL	8	Oxidation (M)	_M(Oxidation (M))APRTLLL_		M(1)APRTLLL		M(92)APRTLLL	0	0	1		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7757263183594	2	465.775688	929.536823	0.36304	0.0001691	-0.84639	-0.00039423	-0.48335	-0.00022513	465.7756920648788	45.713	2.5443	45.778	45.248	47.792	0.065048					220	92	4	0	0	0	0.027083	6	10170	10128;10170;10211;10308;10358;10460		92.491	25.148	1	29463000			29362	8321;12917	16974	16975	36197;36198;36199;36200;36201;36202	36198		899;986			0.06923605922122533
MAPRVIVI	8	Oxidation (M)	_M(Oxidation (M))APRVIVI_		M(1)APRVIVI		M(40)APRVIVI	0	0	1		ENSG00000131634|ENST00000566264|TMEM204	ENSG00000131634|ENST00000566264|TMEM204	ENSG00000131634|ENST00000566264|TMEM204	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7781677246094	2	457.778231	913.541908	-0.0068187	-3.1214E-06	0.0017266	7.9038E-07	-0.0050921	-2.3311E-06	457.77811278355614	46.487	0.57943	46.542	46.217	46.796	0.054375					36	20	2	0	0	0	0.2157	1	10484	10484		40.449	11.962	1	494980			29363	3578	16975	16976	36203	36203		455			0.08167909784719996
MAPRVIVI	8	Oxidation (M)	_M(Oxidation (M))APRVIVI_					0	0	1		ENSG00000131634|ENST00000566264|TMEM204	ENSG00000131634|ENST00000566264|TMEM204	ENSG00000131634|ENST00000566264|TMEM204	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	457.778231	913.541908	-0.10236	-4.686E-05	-0.78038	-0.00035724	-0.88274	-0.0004041	457.77785976631657	46.415	0.64448	46.415	46.168	46.813	0	-0.096517	-0.00033545	NaN	40.449	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	492380			29364	3578	16975	16976				455			0.08167909784719996
MAPRVIVI	8	Oxidation (M)	_M(Oxidation (M))APRVIVI_					0	0	1		ENSG00000131634|ENST00000566264|TMEM204	ENSG00000131634|ENST00000566264|TMEM204	ENSG00000131634|ENST00000566264|TMEM204	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	457.778231	913.541908	0.22565	0.0001033	0.13704	6.2734E-05	0.36269	0.00016603	457.77815744717714	46.525	0.53834	46.578	46.252	46.79	0.052574	0.066415	0.0005045	NaN	40.449	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	511990			29365	3578	16975	16976				455			0.08167909784719996
MARKNKIYSI	10	Unmodified	_MARKNKIYSI_					0	0	0		ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.215087890625	3	408.569147	1222.68561	-0.30892	-0.00012622	-0.45336	-0.00018523	-0.76228	-0.00031144	408.56897128418296	28.208	1.0415	28.208	27.764	28.805	0.0004673					102	36	4	0	0	0	0.31746	1	5039	5039		9.544	9.544	1	875540			29366	4702	16976	16977	36204	36204					0.08317711824997787
MASFGWKRK	9	Unmodified	_MASFGWKRK_					0	0	0		ENST00000511730.2_1_5:40716249-40756023:-|nuORF;ENSG00000113638|ENST00000337702|TTC33;ENST00000504251.6_1_5:40728574-40756023:-|nuORF;ENST00000503936.6_1_5:40716581-40756023:-|nuORF	ENST00000511730.2_1_5:40716249-40756023:-|nuORF	ENST00000511730.2_1_5:40716249-40756023:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7964477539062	2	555.797486	1109.58042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.8	1	117.82	117.32	118.32	0.023476								0	0	0	0.2672	1	30524	30524		0.52476	0	1				29367	2518	16977	16978	36205	36205					0.03001215419226355
MASLHPLQQL	10	Unmodified	_MASLHPLQQL_					0	0	0		nc|ENSG00000137709|Q9UKI9-3|POU2F3;ENSG00000137709|ENST00000543440|POU2F3;nc|ENSG00000137709|Q9UKI9-2|POU2F3	nc|ENSG00000137709|Q9UKI9-3|POU2F3	nc|ENSG00000137709|Q9UKI9-3|POU2F3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3160400390625	2	569.307884	1136.60121	0.097897	5.5733E-05	3.1844	0.0018129	3.2823	0.0018686	569.3095388587915	12.117	0.13956	12.02	11.954	12.094	-0.096607					10	6	2	0	0	0	0.32132	1	16	16		1.4819	0.68827	1	10248			29368	4068	16978	16979	36206	36206					0.038377610082534375
MATDMSYTIF	10	Unmodified	_MATDMSYTIF_					0	0	0			REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.2568969726562	2	590.256668	1178.49878	0.84275	0.00049744	-1.0505	-0.00062007	-0.20777	-0.00012264	590.2557012465971	78.143	0.51302	78.143	77.902	78.415	0					43	18	3	0	0	0	0.20278	2	20199	20199;20253		32.305	3.7529	1	512730	+		29369	13599	16979	16980	36207;36208	36207					-0.08332692845533529
MATDMSYTIF	10	Unmodified	_MATDMSYTIF_					0	0	0			REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.25634765625	2	590.256668	1178.49878	0.68952	0.000407	-1.2624	-0.00074515	-0.57288	-0.00033815	590.2556278786664	78.048	0.65673	78.106	77.898	78.554	0.058151					51	23	3	0	0	0	0.21644	1	20191	20191		30.637	5.2372	1	447990	+		29370	13599	16979	16980	36209	36209					-0.08332692845533529
MATDMSYTIF	10	Unmodified	_MATDMSYTIF_					0	0	0			REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.2564086914062	2	590.256668	1178.49878	0.91012	0.0005372	-1.2074	-0.0007127	-0.29732	-0.0001755	590.2555057904491	78.161	0.60646	78.131	77.926	78.532	-0.030434					49	22	3	0	0	0	0.2593	1	20207	20207		25.399	0	1	542100	+		29371	13599	16979	16980	36210	36210					-0.08332692845533529
MATFISVQLKK	11	Unmodified	_MATFISVQLKK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3690795898438	2	633.367941	1264.72133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.87	1	111.86	111.36	112.36	-0.015625								0	0	0	0.38126	1	29104	29104		1.1933	0.66858	1				29372	6434	16980	16981	36211	36211					0.09955749281994031
MCAVTEDSLQ	10	Unmodified	_MCAVTEDSLQ_					0	0	0			REV__ENSG00000090889|ENST00000374403|KIF4A	REV__ENSG00000090889|ENST00000374403|KIF4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2848510742188	2	548.736099	1095.45765	1.1185	0.00061374	-1.7235	-0.00094575	-0.60505	-0.00033201	548.735090331739	50.621	0.56308	50.642	50.335	50.898	0.020691					31	20	2	0	0	0	0.31515	1	11817	11817		12.241	1.4167	1	284010	+		29373	14052	16981	16982	36212	36212					-0.0862645388499459
MCLRLPRV	8	Unmodified	_MCLRLPRV_					0	0	0		ENST00000509479.6_1_4:141074561-141074693:-|nuORF	ENST00000509479.6_1_4:141074561-141074693:-|nuORF	ENST00000509479.6_1_4:141074561-141074693:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7983703613281	2	494.283157	986.551762	0.35944	0.00017767	2.1061	0.001041	2.4655	0.0012187	494.2829019370725	80.168	0.16688	80.141	80.006	80.173	-0.026825					6	5	2	0	0	0	0.34337	1	20769	20769		5.2307	3.1709	1	50070			29374	11358	16982	16983	36213	36213					0.057947745184492305
MCSVHPCRHA	10	Unmodified	_MCSVHPCRHA_					0	0	0		ENSG00000144848|ENST00000283290|ATG3;nc|ENSG00000144848|Q9NT62-2|ATG3	ENSG00000144848|ENST00000283290|ATG3	ENSG00000144848|ENST00000283290|ATG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2656860351562	2	570.746613	1139.47867	-0.047965	-2.7376E-05	-0.62828	-0.00035859	-0.67624	-0.00038596	570.7462134305528	15.177	0.47341	15.177	14.845	15.319	0					21	16	2	0	0	0	0.40106	1	974	974		3.2813	1.2216	1	36825			29375	4618	16983	16984	36214	36214					-0.08548722266459663
MCSVHPCRHA	10	Unmodified	_MCSVHPCRHA_					0	0	0		ENSG00000144848|ENST00000283290|ATG3;nc|ENSG00000144848|Q9NT62-2|ATG3	ENSG00000144848|ENST00000283290|ATG3	ENSG00000144848|ENST00000283290|ATG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8220825195312	2	570.746613	1139.47867	0.14574	8.3179E-05	-1.4192	-0.00081002	-1.2735	-0.00072684	570.7456847765611	15.072	0.52897	14.962	14.818	15.347	-0.10981					25	18	2	0	0	0	0.32054	1	935	935		3.2813	0	1	48215			29376	4618	16983	16984	36215	36215					-0.08548722266459663
MCSVHPCRHA	10	Unmodified	_MCSVHPCRHA_					0	0	0		ENSG00000144848|ENST00000283290|ATG3;nc|ENSG00000144848|Q9NT62-2|ATG3	ENSG00000144848|ENST00000283290|ATG3	ENSG00000144848|ENST00000283290|ATG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.265380859375	2	570.746613	1139.47867	-0.041214	-2.3523E-05	-1.1721	-0.00066897	-1.2133	-0.0006925	570.746054156435	15.164	0.37769	15.099	14.955	15.333	-0.064413					17	12	2	0	0	0	0.40106	1	999	999		3.2813	1.2216	1	34719			29377	4618	16983	16984	36216	36216					-0.08548722266459663
MDAMLFRLY	9	Unmodified	_MDAMLFRLY_					0	0	0		nc|ENSG00000186038|A5X5Y0-2|HTR3E;nc|ENSG00000186038|A5X5Y0-4|HTR3E;ENSG00000186038|ENST00000415389|HTR3E;nc|ENSG00000186038|A5X5Y0-3|HTR3E;nc|ENSG00000186038|A5X5Y0-6|HTR3E	nc|ENSG00000186038|A5X5Y0-2|HTR3E	nc|ENSG00000186038|A5X5Y0-2|HTR3E	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.2867431640625	2	580.285563	1158.55657	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.64	1	80.705	80.205	81.205	0.065094								0	0	0	0.26334	1	20959	20959		2.0598	0	1				29378	7583	16984	16985	36217	36217					-0.01636386129416678
MDEQTDASF	9	Unmodified	_MDEQTDASF_					0	0	0			REV__PLEKHA7|p.G1041Vfs*31|1|0.13|ENSG00000166689|chr11:16789809-16789809|C/-|frameshift_variant	REV__PLEKHA7|p.G1041Vfs*31|1|0.13|ENSG00000166689|chr11:16789809-16789809|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.7821044921875	2	522.202947	1042.39134	0.38836	0.00020281	1.868	0.00097548	2.2564	0.0011783	522.2036857837229	67.852	0.53241	67.836	67.618	68.151	-0.016304					27	18	2	0	0	0	0.25622	1	17016	17016		7.2892	1.5288	1	269360	+		29379	17333	16985	16986	36218	36218					-0.1281594645538462
MDESSCDPEF	10	Unmodified	_MDESSCDPEF_					0	0	0			REV__nc|ENSG00000135047|P07711-3|CTSL	REV__nc|ENSG00000135047|P07711-3|CTSL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.2841796875	2	580.199547	1158.38454	0.43673	0.00025339	0.10774	6.2509E-05	0.54447	0.0003159	580.1998935945606	52.591	0.67458	52.641	52.309	52.984	0.050571					51	24	3	0	0	0	0.32009	1	12388	12388		3.9444	0	1	551810	+		29380	15717	16986	16987	36219	36219					-0.18831627398276396
MDFQERDP	8	Unmodified	_MDFQERDP_					0	0	0		ENST00000580226.5_1_17:45896968-45897692:-|nuORF;ENST00000585051.1_1_17:45897093-45897692:-|nuORF;nc|ENSG00000006025|Q9BZF2-2|OSBPL7;ENSG00000006025|ENST00000007414|OSBPL7	ENST00000580226.5_1_17:45896968-45897692:-|nuORF	ENST00000580226.5_1_17:45896968-45897692:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7767333984375	2	519.221474	1036.42839	0.23827	0.00012372	0.28882	0.00014996	0.52709	0.00027368	519.2216336615694	69.617	0.87036	69.595	69.267	70.137	-0.022087					131	31	6	0	0	0	0.33661	1	17489	17489		19.257	3.4098	1	2593100			29381	350	16987	16988	36220	36220					-0.08836230118981803
MDGMHPQFEF	10	Unmodified	_MDGMHPQFEF_					0	0	0			REV__ENST00000483628.1_1:206566231-206579954:+|nuORF	REV__ENST00000483628.1_1:206566231-206579954:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.7521362304688	2	619.752084	1237.48961	0.23924	0.00014827	-0.465	-0.00028819	-0.22577	-0.00013992	619.7518306387533	80.478	0.64554	80.478	80.124	80.77	0					46	24	3	0	0	0	0.33594	2	20848	20828;20848		15.248	5.9025	1	348580	+		29382	17681	16988	16989	36221;36222	36222					-0.11963041411195263
MDGMHPQFEF	10	Unmodified	_MDGMHPQFEF_					0	0	0			REV__ENST00000483628.1_1:206566231-206579954:+|nuORF	REV__ENST00000483628.1_1:206566231-206579954:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.75390625	2	619.752084	1237.48961	0.033218	2.0587E-05	0.17857	0.00011067	0.21179	0.00013126	619.7524338970453	80.372	0.89723	80.437	79.804	80.701	0.065102					50	33	2	0	0	0	0.11062	2	20751	20751;20808		45.74	29.893	1	334830	+		29383	17681	16988	16989	36223;36224	36223					-0.11963041411195263
MDIHWDHVS	9	Unmodified	_MDIHWDHVS_					0	0	0		ENSG00000124302|ENST00000650847|CHST8	ENSG00000124302|ENST00000650847|CHST8	ENSG00000124302|ENST00000650847|CHST8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.234619140625	2	570.250566	1138.48658	0.59301	0.00033817	0.55724	0.00031776	1.1502	0.00065593	570.2508671730435	36.205	0.67094	36.291	36.112	36.783	0.086246					71	23	4	0	0	0	0.28128	1	7327	7327		11.64	11.64	1	1148200			29384	3152	16989	16990	36225	36225					-0.07712548473705283
MDKIHQQDFV	10	Unmodified	_MDKIHQQDFV_					0	0	0		ENSG00000159224|ENST00000357424|GIP	ENSG00000159224|ENST00000357424|GIP	ENSG00000159224|ENST00000357424|GIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2345275878906	3	420.872895	1259.59686	-0.11007	-4.6324E-05	0.11744	4.9425E-05	0.0073699	3.1018E-06	420.8729308996151	19.918	0.19332	19.918	19.822	20.016	0					8	6	2	0	0	0	0.32122	1	2403	2403		2.086	0	1	26272			29385	5393	16990	16991	36226	36226					-0.022557482053343847
MDKIHQQDFV	10	Unmodified	_MDKIHQQDFV_					0	0	0		ENSG00000159224|ENST00000357424|GIP	ENSG00000159224|ENST00000357424|GIP	ENSG00000159224|ENST00000357424|GIP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	420.872895	1259.59686	0.24986	0.00010516	-1.5883	-0.00066846	-1.3384	-0.00056331	420.8722918063647	19.973	0.35738	19.917	19.705	20.062	-0.055693	-0.00071688	-0.00069755	NaN	2.086	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19391			29386	5393	16990	16991							-0.022557482053343847
MDLKENQR	8	Unmodified	_MDLKENQR_					0	0	0		ENSG00000185129|ENST00000331327|PURA	ENSG00000185129|ENST00000331327|PURA	ENSG00000185129|ENST00000331327|PURA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7997436523438	2	517.258391	1032.50223	0.13357	6.9091E-05	1.5242	0.00078839	1.6577	0.00085748	517.2597862714368	33.979	0.21982	34.046	33.879	34.099	0.066704					10	7	2	0	0	0	0.31088	1	6629	6629		28.487	3.813	1	63323			29387	7509	16991	16992	36227	36227					-0.012722619566602589
MDLNKHDL	8	Unmodified	_MDLNKHDL_					0	0	0			REV__ENST00000531175.1_1_11:112100935-112103990:+|nuORF	REV__ENST00000531175.1_1_11:112100935-112103990:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2321472167969	2	493.242209	984.469866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.016	1	76.016	75.516	76.516	0								0	0	0	0.35353	1	19557	19557		13.042	3.695	1		+		29388	16513	16992	16993	36228	36228					-0.02299049359669425
MDLSSEQSI	9	Unmodified	_MDLSSEQSI_					0	0	0			REV__ENST00000482885.1_1_3:159571168-159604134:+|nuORF	REV__ENST00000482885.1_1_3:159571168-159604134:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2634582519531	2	505.228965	1008.44338	0.083089	4.1979E-05	3.372	0.0017037	3.4551	0.0017456	505.22960490718134	76.524	0.12802	76.577	76.512	76.64	0.053413					6	4	2	0	0	0	0.13898	1	19697	19697		36.127	2.0246	1	70461	+		29389	21513	16993	16994	36229	36229					-0.060507830416327124
MDPVALLAL	9	Unmodified	_MDPVALLAL_					0	0	0			REV__ENST00000583392.1_1_17:66039031-66039124:+|nuORF	REV__ENST00000583392.1_1_17:66039031-66039124:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.77001953125	2	471.770071	941.52559	0.37126	0.00017515	-0.49838	-0.00023512	-0.12712	-5.9973E-05	471.7697424755793	74.488	0.38974	74.488	74.313	74.703	0					16	13	2	0	0	0	0.25314	1	19106	19106		15.847	2.3393	1	269850	+		29390	18201	16994	16995	36230	36230					0.05248783827960324
MDRETKTKKG	10	Unmodified	_MDRETKTKKG_					0	0	0			REV__L1ME3D_dup1414|chr6:992775-993790:+|1.6206251658625463|0.1485922487241397|3.45|512.0|13|2|sense	REV__L1ME3D_dup1414|chr6:992775-993790:+|1.6206251658625463|0.1485922487241397|3.45|512.0|13|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.31884765625	2	597.31898	1192.62341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.291	1	13.224	12.724	13.724	-0.067496								0	0	0	0.38203	1	380	380		0.35063	0	1		+		29391	22796	16995	16996	36231	36231					0.034799406860202
MDSLKNENF	9	Unmodified	_MDSLKNENF_					0	0	0		nc|ENSG00000168671|Q3SY77-2|UGT3A2;ENSG00000168671|ENST00000282507|UGT3A2	nc|ENSG00000168671|Q3SY77-2|UGT3A2	nc|ENSG00000168671|Q3SY77-2|UGT3A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7875366210938	2	549.250231	1096.48591	0.56971	0.00031291	-0.00013035	-7.1596E-08	0.56958	0.00031284	549.2517609715374	72.376	0.73106	72.348	72.038	72.769	-0.027275					47	25	3	0	0	0	0.22674	1	18484	18484		17.113	0	1	264760			29392	6290	16996	16997	36232	36232					-0.05847387913399871
MDTSTNLDI	9	Unmodified	_MDTSTNLDI_					0	0	0		ENST00000509433.1_1_5:72858415-72858706:-|nuORF;ENST00000515804.1_1_5:72853376-72858706:-|nuORF;ENSG00000164331|ENST00000296785|ANKRA2	ENST00000509433.1_1_5:72858415-72858706:-|nuORF	ENST00000509433.1_1_5:72858415-72858706:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.26361083984375	2	505.228965	1008.44338	0.29307	0.00014807	2.4255	0.0012254	2.7186	0.0013735	505.22957314417897	76.674	0.33163	76.674	76.422	76.754	0					16	11	2	0	0	0	0.13898	1	19694	19694		43.858	16.975	1	62259			29393	5834	16997	16998	36233	36233					-0.0605078304165545
MDVFQKDDQ	9	Unmodified	_MDVFQKDDQ_					0	0	0			REV__nc|ENSG00000118094|O43280-2|TREH	REV__nc|ENSG00000118094|O43280-2|TREH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8212280273438	2	563.247689	1124.48082	0.29596	0.0001667	0.17889	0.00010076	0.47485	0.00026746	563.247848324124	68.962	0.3603	68.962	68.841	69.201	0					14	12	2	0	0	0	0.24289	1	17451	17451		18.146	14.55	1	137250	+		29394	14998	16998	16999	36234	36234					-0.07643691776024752
MDVFQKDDQ	9	Unmodified	_MDVFQKDDQ_					0	0	0			REV__nc|ENSG00000118094|O43280-2|TREH	REV__nc|ENSG00000118094|O43280-2|TREH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8213500976562	2	563.247689	1124.48082	0.24609	0.00013861	2.4458	0.0013776	2.6919	0.0015162	563.2485876587751	69.014	0.31726	68.995	68.895	69.212	-0.019157					17	10	3	0	0	0	0.24289	1	17445	17445		18.146	7.3224	1	134590	+		29395	14998	16998	16999	36235	36235					-0.07643691776024752
MDWACSLWSS	10	Unmodified	_MDWACSLWSS_					0	0	0			REV__ENST00000263856.8_1_2:86732031-86732436:-|nuORF	REV__ENST00000263856.8_1_2:86732031-86732436:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8291625976562	2	593.238809	1184.46307	0.73251	0.00043455	-4.3116	-0.0025578	-3.5791	-0.0021233	593.2363108856525	77.417	0.4539	77.472	77.284	77.738	0.055412					30	15	3	0	0	0	0.31629	1	20019	20019		10.074	0.6908	1	170050	+		29396	19625	16999	17000	36236	36236					-0.12178730302525764
MEALRSAF	8	Unmodified	_MEALRSAF_					0	0	0			REV__ENSG00000102385|ENST00000395209|DRP2	REV__ENSG00000102385|ENST00000395209|DRP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.7555236816406	2	462.73402	923.453487	0.15139	7.0052E-05	-2.8105	-0.0013005	-2.6591	-0.0012304	462.73215636443433	62.749	0.3416	62.741	62.621	62.963	-0.0085526					17	12	2	0	0	0	0.31617	1	15528	15528		26.884	16.7	1	98286	+		29397	14320	17000	17001	36237	36237					-0.011301305257461536
MEAQHVTL	8	Unmodified	_MEAQHVTL_					0	0	0		nc|ENSG00000166478|P52747-3|ZNF143;nc|ENSG00000166478|P52747-2|ZNF143;ENSG00000166478|ENST00000396602|ZNF143	nc|ENSG00000166478|P52747-3|ZNF143	nc|ENSG00000166478|P52747-3|ZNF143	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.27227783203125	2	464.731477	927.448402	-0.3436	-0.00015968	0.47094	0.00021886	0.12734	5.9178E-05	464.73182433577813	13.743	0.27538	13.743	13.597	13.872	0					13	9	2	0	0	0	0.33993	1	528	528		16.942	12.186	1	22737			29398	12818	17001	17002	36238	36238					-0.018224343883503025
MEDHLVQL	8	Unmodified	_MEDHLVQL_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.2876281738281	2	492.744585	983.474617	0.25499	0.00012565	-0.40912	-0.00020159	-0.15413	-7.5945E-05	492.744605038194	67.639	0.22105	67.623	67.478	67.7	-0.016296					11	7	2	0	0	0	0.33245	1	16963	16963		19.439	4.8573	1	64702			29399	4808	17002	17003	36239	36239					-0.017781652168991968
MEDSDWQRCGL	11	Unmodified	_MEDSDWQRCGL_					0	0	0			REV__ENSG00000172071|ENST00000303236|EIF2AK3	REV__ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.25042724609375	3	447.185033	1338.53327	0.15906	7.113E-05	-0.15895	-7.108E-05	0.00011163	4.9921E-08	447.51949802802983	16.732	0.5466	16.732	16.405	16.952	0					39	18	3	0	0	0	0.33347	1	1446	1446		0.45452	0.29519	1	104340	+		29400	17691	17003	17004	36240	36240					-0.12245476704720204
MEDSDWQRCGL	11	Unmodified	_MEDSDWQRCGL_					0	0	0			REV__ENSG00000172071|ENST00000303236|EIF2AK3	REV__ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	447.185033	1338.53327	-0.028001	-1.2521E-05	0.19605	8.7671E-05	0.16805	7.515E-05	447.1850929145065	16.798	0.58155	16.684	16.448	17.029	-0.11434	0.0030529	0.00036457	NaN	0.45452	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85326	+		29401	17691	17003	17004							-0.12245476704720204
MEDSDWQRCGL	11	Unmodified	_MEDSDWQRCGL_					0	0	0			REV__ENSG00000172071|ENST00000303236|EIF2AK3	REV__ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	447.185033	1338.53327	0.25543	0.00011422	-0.33624	-0.00015036	-0.080814	-3.6139E-05	447.18498794663594	16.689	0.76215	16.626	16.235	16.997	-0.062534	-0.054344	-0.00034953	NaN	0.45452	62	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99033	+		29402	17691	17003	17004							-0.12245476704720204
MEDWMQVSKRY	11	Unmodified	_MEDWMQVSKRY_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.282958984375	3	491.560212	1471.65881	-0.0011907	-5.8531E-07	0.44983	0.00022112	0.44864	0.00022053	491.56012265452915	13.437	0.27671	13.338	13.189	13.466	-0.099291					18	9	3	0	0	0	0.33336	1	439	439		1.1098	1.0264	1	34867			29403	6576	17004	17005	36241	36241					-0.05815764848512117
MEDWMQVSKRY	11	Unmodified	_MEDWMQVSKRY_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	491.560212	1471.65881	0.014831	7.2905E-06	0.2086	0.00010254	0.22343	0.00010983	491.89495669432705	13.306	0.30588	13.306	13.09	13.396	0	-0.022502	-0.00028093	NaN	1.1098	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31198			29404	6576	17004	17005							-0.05815764848512117
MEEQERIME	9	Unmodified	_MEEQERIME_					0	0	0			REV__ENST00000562938.5_1_15:78207528-78213944:-|nuORF	REV__ENST00000562938.5_1_15:78207528-78213944:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.7623291015625	2	597.760106	1193.50566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.123	1	74.093	73.593	74.593	-0.030655								0	0	0	0.21673	1	18965	18965		17.113	0.1706	1		+		29405	22321	17005	17006	36242	36242					-0.08335379964955791
MEERREKRE	9	Unmodified	_MEERREKRE_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.8985290527344	3	421.547182	1261.61972	-0.10007	-4.2186E-05	0.60822	0.00025639	0.50815	0.00021421	421.547326601969	16.814	0.52269	16.814	16.574	17.097	0					25	17	2	0	0	0	0.25871	1	1385	1385		6.1918	0	1	38487			29406	369	17006	17007	36243	36243					-0.0006272908783557796
MEFRVSSLE	9	Unmodified	_MEFRVSSLE_					0	0	0		ENST00000547500.1_1_12:54891564-54894436:+|nuORF	ENST00000547500.1_1_12:54891564-54894436:+|nuORF	ENST00000547500.1_1_12:54891564-54894436:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3014526367188	2	549.268424	1096.5223	-0.77279	-0.00042447	-1.3619	-0.00074807	-2.1347	-0.0011725	549.2675054121256	34.617	0.58218	34.617	34.388	34.971	0					41	20	3	0	0	0	0.21389	1	6822	6822		25.399	9.5521	1	326120			29407	11770	17007	17008	36244	36244					-0.022105110166648956
MEFRVSSLE	9	Unmodified	_MEFRVSSLE_					0	0	0		ENST00000547500.1_1_12:54891564-54894436:+|nuORF	ENST00000547500.1_1_12:54891564-54894436:+|nuORF	ENST00000547500.1_1_12:54891564-54894436:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3013305664062	2	549.268424	1096.5223	-0.88546	-0.00048635	-1.3477	-0.00074025	-2.2332	-0.0012266	549.2673464373383	34.553	0.68944	34.628	34.353	35.043	0.075306					42	24	3	0	0	0	0.21389	1	6800	6800		25.399	9.5521	1	351370			29408	11770	17007	17008	36245	36245					-0.022105110166648956
MEGAPPLVFP	10	Unmodified	_MEGAPPLVFP_					0	0	0			REV__NOP2|p.H441Afs*36|1|0.29|ENSG00000111641|chr12:6560961-6560962|-/AT|frameshift_variant;REV__nc|ENSG00000111641|P46087-3|NOP2	REV__nc|ENSG00000111641|P46087-3|NOP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7931518554688	2	529.272978	1056.5314	0.62496	0.00033077	-0.113	-5.9808E-05	0.51196	0.00027097	529.272975788923	37.883	1.0356	37.883	37.587	38.623	0					69	36	4	0	0	0	0.31165	1	7774	7774		15.847	5.7733	1	835660	+		29409	14727;22941	17008	17009	36246	36246					0.005398823396262742
MEGKRRWS	8	Unmodified	_MEGKRRWS_					0	0	0		ENST00000472247.1_1_13:103528137-103528182:+|nuORF	ENST00000472247.1_1_13:103528137-103528182:+|nuORF	ENST00000472247.1_1_13:103528137-103528182:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.26806640625	2	525.269093	1048.52363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.724	1	99.763	99.263	100.26	0.038994								0	0	0	0.37277	1	26667	26667		4.3292	0.38484	1				29410	10891	17009	17010	36247	36247					0.0013116786271893943
MEHYVSMYIHG	11	Unmodified	_MEHYVSMYIHG_					0	0	0		nc|ENSG00000173011|Q86TJ2-3|TADA2B;nc|ENSG00000173011|Q86TJ2-2|TADA2B;ENSG00000173011|ENST00000310074|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.552978515625	3	456.202136	1365.58458	-0.20295	-9.2587E-05	-1.6035	-0.0007315	-1.8064	-0.00082409	456.5356856034428	14.04	0.28792	14.04	13.767	14.055	0					12	9	2	0	0	0	0.33346	1	564	564		0.50596	0.17668	1	32055			29411	6686	17010	17011	36248	36248					-0.08359107939986643
MEKFNLDL	8	Unmodified	_MEKFNLDL_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP;ENST00000455617.1_1_22:17898646-17898763:+|nuORF	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2635803222656	2	505.254785	1008.49502	0.14532	7.3421E-05	-2.6084	-0.0013179	-2.463	-0.0012445	505.2534311598261	76.262	1.5397	76.315	75.837	77.376	0.053413					104	43	3	0	0	0	0.056926	3	19612	19602;19612;19656		74.929	1.4035	1	2814700			29412	6120	17011	17012	36249;36250;36251	36250					-0.008889945570672353
MELIAQEMN	9	Unmodified	_MELIAQEMN_					0	0	0			REV__nc|ENSG00000173421|Q8IYA8-2|IHO1	REV__nc|ENSG00000173421|Q8IYA8-2|IHO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3560180664062	2	539.74901	1077.48347	0.59057	0.00031876	-3.523	-0.0019015	-2.9324	-0.0015828	539.7470845163714	47.441	0.39677	47.493	47.354	47.75	0.052574					19	14	2	0	0	0	0.24289	1	10761	10761		18.146	0	1	141600	+		29413	17782	17012	17013	36252	36252					-0.05217559642710512
MELVLHIL	8	Unmodified	_MELVLHIL_					0	0	0			REV__ENST00000379607.9_1_X:20146365-20150302:-|nuORF	REV__ENST00000379607.9_1_X:20146365-20150302:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.30206298828125	2	484.285889	966.557224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.698	1	69.698	69.198	70.198	0								0	0	0	0.34461	1	17627	17627		17.087	4.555	1		+		29414	20536	17013	17014	36253	36253					0.07260776581915707
MEMRLLHE	8	Unmodified	_MEMRLLHE_					0	0	0			REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2968139648438	2	529.759712	1057.50487	0.044492	2.357E-05	0.17263	9.1454E-05	0.21712	0.00011502	529.7598320466067	13.481	0.35477	13.382	13.189	13.544	-0.099291					26	12	3	0	0	0	0.34414	1	473	473		2.0598	0.21551	1	83022	+		29415	22503	17014	17015	36254	36254					-0.021581298233513735
MEMRLLHE	8	Unmodified	_MEMRLLHE_					0	0	0			REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	REV__ENST00000584580.1_1_17:45912634-45914483:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2968139648438	2	529.759712	1057.50487	0.10186	5.3962E-05	-0.17791	-9.4251E-05	-0.076053	-4.029E-05	529.7596593988278	13.496	0.38485	13.429	13.245	13.63	-0.067495					29	13	3	0	0	0	0.34353	1	478	478		4.756	0.42677	1	92043	+		29416	22503	17014	17015	36255	36255					-0.021581298233513735
MENPLLSSQF	10	Unmodified	_MENPLLSSQF_					0	0	0		nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-5|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.326904296875	2	583.281531	1164.54851	0.30241	0.00017639	-0.87083	-0.00050794	-0.56842	-0.00033155	583.2814342802171	48.718	1.292	48.75	48.282	49.574	0.032043					75	46	2	0	0	0	0.31629	1	11302	11302		6.2058	0	1	561830			29417	4582	17015	17016	36256	36256					-0.02718241845218472
MEPLIRQR	8	Unmodified	_MEPLIRQR_					0	0	0		ENST00000435074.5_1_6:33080250-33086274:+|nuORF	ENST00000435074.5_1_6:33080250-33086274:+|nuORF	ENST00000435074.5_1_6:33080250-33086274:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.269775390625	2	521.794943	1041.57533	0.18382	9.5914E-05	-0.24912	-0.00012999	-0.065305	-3.4076E-05	521.7948166667982	15.313	0.36939	15.203	15.01	15.38	-0.10981					20	12	2	0	0	0	0.34408	1	971	971		2.3027	0.24298	1	71407			29418	10505	17016	17017	36257	36257					0.0562091155663893
MEPTIYLIK	9	Unmodified	_MEPTIYLIK_					0	0	0			REV__nc|ENSG00000108469|O94762-2|RECQL5	REV__nc|ENSG00000108469|O94762-2|RECQL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3095703125	2	554.309561	1106.60457	0.42041	0.00023304	-1.3059	-0.00072387	-0.88547	-0.00049083	554.3089044859082	92.98	0.39767	92.981	92.804	93.201	0.00046539					64	37	2	0	0	0	0.23007	2	24741	24741;24777		19.257	4.4187	1	192150	+		29419	14595	17017	17018	36258;36259	36258					0.05553011062261248
MERCSRCHR	9	Unmodified	_MERCSRCHR_					0	0	0		COL11A2|p.D197Vfs*99|1|0.27|ENSG00000204248|chr6:33188378-33188378|T/-|frameshift_variant;nc|ENSG00000204248|P13942-9|COL11A2;nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2	COL11A2|p.D197Vfs*99|1|0.27|ENSG00000204248|chr6:33188378-33188378|T/-|frameshift_variant	COL11A2|p.D197Vfs*99|1|0.27|ENSG00000204248|chr6:33188378-33188378|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3433837890625	2	589.260419	1176.50628	0.0099214	5.8463E-06	2.4198	0.0014259	2.4297	0.0014317	589.7646282269227	98.546	0.042557	98.546	98.529	98.571	0					5	4	2	0	0	0	0.26145	1	26370	26370		2.0598	0	1	30811			29420	194	17018	17019	36260	36260					-0.0749081900623878
MERCSRCHR	9	Unmodified	_MERCSRCHR_					0	0	0		COL11A2|p.D197Vfs*99|1|0.27|ENSG00000204248|chr6:33188378-33188378|T/-|frameshift_variant;nc|ENSG00000204248|P13942-9|COL11A2;nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2	COL11A2|p.D197Vfs*99|1|0.27|ENSG00000204248|chr6:33188378-33188378|T/-|frameshift_variant	COL11A2|p.D197Vfs*99|1|0.27|ENSG00000204248|chr6:33188378-33188378|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	589.260419	1176.50628	0.35043	0.0002065	2.1393	0.0012606	2.4897	0.0014671	589.7652532185526	98.239	0.037186	98.232	98.205	98.242	-0.0068283	-0.15703	-0.00023338	NaN	2.0598	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175460			29421	194	17018	17019							-0.0749081900623878
MERRWDLDLTY	11	Unmodified	_MERRWDLDLTY_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;TNS2|p.R491Gfs*29|1|0.24|ENSG00000111077|chr12:53059109-53059109|C/-|frameshift_variant;TNS2|p.T701Cfs*52|1|0.31|ENSG00000111077|chr12:53059738-53059747|GCCTACAGCA/-|frameshift_variant;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;ENST00000549498.5_1_12:53442984-53449630:+|nuORF	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.3055725097656	3	499.910009	1496.7082	0.21656	0.00010826	2.2937	0.0011466	2.5102	0.0012549	500.2457718149315	18.436	0.37823	18.436	18.299	18.677	0					20	12	2	0	0	0	0.33346	1	2003	2003		0.50596	0.051438	1	51568			29422	2347	17019	17020	36261	36261					-0.02028733568045027
MERRWDLDLTY	11	Unmodified	_MERRWDLDLTY_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;TNS2|p.R491Gfs*29|1|0.24|ENSG00000111077|chr12:53059109-53059109|C/-|frameshift_variant;TNS2|p.T701Cfs*52|1|0.31|ENSG00000111077|chr12:53059738-53059747|GCCTACAGCA/-|frameshift_variant;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;ENST00000549498.5_1_12:53442984-53449630:+|nuORF	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	499.910009	1496.7082	-0.026043	-1.3019E-05	2.4647	0.0012322	2.4387	0.0012191	500.24559857189035	18.642	0.42235	18.583	18.341	18.763	-0.058174	0.073854	0.0001432	NaN	0.50596	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54394			29423	2347	17019	17020							-0.02028733568045027
MESTFLCSM	9	Unmodified	_MESTFLCSM_					0	0	0			REV__ENST00000565971.5_1_16:28837630-28838212:+|nuORF	REV__ENST00000565971.5_1_16:28837630-28838212:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.71142578125	2	524.711039	1047.40752	0.52258	0.0002742	-0.6276	-0.00032931	-0.10502	-5.5107E-05	524.7110398154865	68.858	0.85969	68.839	68.547	69.407	-0.019157					83	30	4	0	0	0	0.21303	3	17339	17339;17383;17436		21.747	0	1	1858300	+		29424	22364	17020	17021	36262;36263;36264	36262					-0.11428279814504094
MFALLYLML	9	Unmodified	_MFALLYLML_					0	0	0			REV__ENSG00000225781|ENST00000418316|OR6V1	REV__ENSG00000225781|ENST00000418316|OR6V1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8036499023438	2	557.805599	1113.59665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.563	1	87.563	87.063	88.063	0								0	0	0	0.22457	1	23094	23094		14.582	3.4672	1		+		29425	19117	17021	17022	36265	36265					0.04439160541119236
MFCLRPALY	9	Unmodified	_MFCLRPALY_					0	0	0		BAZ1B|p.L1211M|1|0.12|ENSG00000009954|chr7:73449639-73449639|G/T|missense_variant	BAZ1B|p.L1211M|1|0.12|ENSG00000009954|chr7:73449639-73449639|G/T|missense_variant	BAZ1B|p.L1211M|1|0.12|ENSG00000009954|chr7:73449639-73449639|G/T|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2939453125	2	557.282823	1112.55109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.989	1	65.989	65.489	66.489	0								0	0	0	0.21726	1	16492	16492		16.942	2.104	1				29426	71	17022	17023	36266	36266					-0.0006806492124269425
MFFRAPMS	8	Unmodified	_MFFRAPMS_					0	0	0			REV__ENST00000469195.5_3_6:35254110-35258154:+|nuORF	REV__ENST00000469195.5_3_6:35254110-35258154:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7332763671875	2	493.732966	985.451379	0.41076	0.00020281	0.72134	0.00035615	1.1321	0.00055896	493.7330911774473	95.678	0.69302	95.674	95.422	96.115	-0.0038223					140	65	3	0	0	0	0.45851	1	25562	25562		2.8892	0	1	381170	+		29427	21337	17023	17024	36267	36267					-0.04192882535198805
MFFRAPMS	8	Unmodified	_MFFRAPMS_					0	0	0			REV__ENST00000469195.5_3_6:35254110-35258154:+|nuORF	REV__ENST00000469195.5_3_6:35254110-35258154:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.732966	985.451379	0.16213	8.0049E-05	0.98822	0.00048792	1.1504	0.00056797	493.73327122310303	95.675	0.62538	95.675	95.445	96.07	0	0.006486	0.00015844	NaN	2.8892	113	62	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230420	+		29428	21337	17023	17024							-0.04192882535198805
MFFRAPMS	8	Unmodified	_MFFRAPMS_					0	0	0			REV__ENST00000469195.5_3_6:35254110-35258154:+|nuORF	REV__ENST00000469195.5_3_6:35254110-35258154:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	493.732966	985.451379	0.28318	0.00013982	0.80577	0.00039783	1.0889	0.00053765	493.7331746870694	95.579	0.58659	95.656	95.386	95.972	0.077415	-0.01205	-2.1731E-05	NaN	2.8892	141	49	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406650	+		29429	21337	17023	17024							-0.04192882535198805
MFGLCCNKSLF	11	Unmodified	_MFGLCCNKSLF_					0	0	0		ENST00000265350.8_2_6:41874346-41874502:-|nuORF	ENST00000265350.8_2_6:41874346-41874502:-|nuORF	ENST00000265350.8_2_6:41874346-41874502:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.7896728515625	2	631.790155	1261.56576	0.2392	0.00015113	-0.69011	-0.000436	-0.45091	-0.00028488	631.7897115437921	40.841	0.73182	40.94	40.641	41.373	0.099407					81	26	4	0	0	0	0.33432	1	8815	8815		13.615	2.1202	1	1193200			29430	9047	17024	17025	36268	36268					-0.05456360835432861
MFGLHIDT	8	Unmodified	_MFGLHIDT_					0	0	0			REV__ENST00000541157.5_1_11:94212014-94225979:-|nuORF	REV__ENST00000541157.5_1_11:94212014-94225979:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2268371582031	2	467.228571	932.442588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.425	1	98.418	97.918	98.918	-0.0068283								0	0	0	0.36961	1	26371	26371		5.7604	0.52976	1		+		29431	13462	17025	17026	36269	36269					-0.026335329000403362
MFHVFGFCTK	10	Unmodified	_MFHVFGFCTK_					0	0	0			REV__ENST00000555235.1_1_14:103966361-103969561:+|nuORF	REV__ENST00000555235.1_1_14:103966361-103969561:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.5763244628906	3	406.192912	1215.55691	-0.41502	-0.00016858	-0.96951	-0.00039381	-1.3845	-0.00056239	406.1926541506938	13.398	0.25384	13.398	13.174	13.427	0					11	8	2	0	0	0	0.32009	1	352	352		1.9064	0	1	13390	+		29432	22247	17026	17027	36270	36270					-0.042249664095834305
MFHVFGFCTK	10	Unmodified	_MFHVFGFCTK_					0	0	0			REV__ENST00000555235.1_1_14:103966361-103969561:+|nuORF	REV__ENST00000555235.1_1_14:103966361-103969561:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	406.192912	1215.55691	-0.428	-0.00017385	-0.44948	-0.00018258	-0.87747	-0.00035642	406.1925291769449	13.473	0.16679	13.374	13.249	13.416	-0.099291	-0.011777	0.00038737	NaN	1.9064	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22226	+		29433	22247	17026	17027							-0.042249664095834305
MFLGRPLV	8	Unmodified	_MFLGRPLV_					0	0	0		ENST00000358157.2_1_9:91616057-91616102:+|nuORF	ENST00000358157.2_1_9:91616057-91616102:+|nuORF	ENST00000358157.2_1_9:91616057-91616102:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2246398925781	2	466.772948	931.531344	-0.32233	-0.00015045	2.5389	0.0011851	2.2166	0.0010346	466.77401808851965	13.63	0.24931	13.53	13.389	13.638	-0.099291					13	8	2	0	0	0	0.34434	1	443	443		0.79363	0	1	66969			29434	9645	17027	17028	36271	36271					0.06283927130300526
MFLHVKGK	8	Unmodified	_MFLHVKGK_					0	0	0		CON__Q3MHN2	CON__Q3MHN2	CON__Q3MHN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7867431640625	2	480.278398	958.542243	-0.15639	-7.511E-05	0.18569	8.9183E-05	0.029303	1.4073E-05	480.27944798077067	13.054	0.38546	13.054	12.815	13.2	0					25	13	2	0	0	0	0.46461	1	347	347		0.79363	0	1	65150		+	29435	232	17028	17029	36272	36272					0.061313295045806626
MFLIFYVLTL	10	Unmodified	_MFLIFYVLTL_					0	0	0		ENSG00000276240|ENST00000641792|OR4E1	ENSG00000276240|ENST00000641792|OR4E1	ENSG00000276240|ENST00000641792|OR4E1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.9197998046875	3	420.575128	1258.70355	-0.19147	-8.0529E-05	-0.16365	-6.8825E-05	-0.35512	-0.00014935	420.57496668099793	23.775	0.37457	23.775	23.542	23.917	0					17	12	2	0	0	0	0.31482	1	3583	3583		6.6304	3.0433	1	61812			29436	8726	17029	17030	36273	36273					0.08455034027156216
MFLIFYVLTL	10	Unmodified	_MFLIFYVLTL_					0	0	0		ENSG00000276240|ENST00000641792|OR4E1	ENSG00000276240|ENST00000641792|OR4E1	ENSG00000276240|ENST00000641792|OR4E1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	420.575128	1258.70355	0.16613	6.987E-05	-0.42252	-0.0001777	-0.25639	-0.00010783	420.5751340281126	23.875	0.31366	23.836	23.651	23.965	-0.038927	0.020904	-0.00023253	NaN	6.6304	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51219			29437	8726	17029	17030							0.08455034027156216
MFLLGGTFGIA	11	Unmodified	_MFLLGGTFGIA_					0	0	0			REV__ENST00000476962.1_1_10:45953689-45956918:-|nuORF	REV__ENST00000476962.1_1_10:45953689-45956918:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.3026733398438	2	563.801903	1125.58925	0.18952	0.00010685	-0.27894	-0.00015727	-0.089421	-5.0416E-05	563.8018383206437	16.317	0.72303	16.254	16.006	16.729	-0.062534					48	24	3	0	0	0	0.47546	1	1357	1357		1.3295	0	1	102520	+		29438	17234	17030	17031	36274	36274					0.031481442650829194
MFMTILLMEL	10	Unmodified	_MFMTILLMEL_					0	0	0			REV__ENST00000337198.9_1_8:103855780-103855867:-|nuORF	REV__ENST00000337198.9_1_8:103855780-103855867:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.22442626953125	3	414.549596	1240.62696	0.17854	7.4012E-05	0.60595	0.0002512	0.78448	0.00032521	414.54979943836724	32.983	0.27672	33.038	32.956	33.232	0.054375					14	9	2	0	0	0	0.31289	1	6382	6382		12.175	8.2984	1	210260	+		29439	20082	17031	17032	36275	36275					0.01627151144043637
MFMWSRIIF	9	Unmodified	_MFMWSRIIF_					0	0	0		ENST00000562354.2_1_16:31718295-31719595:+|nuORF	ENST00000562354.2_1_16:31718295-31719595:+|nuORF	ENST00000562354.2_1_16:31718295-31719595:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.8765563964844	3	410.876924	1229.60894	0.016612	6.8253E-06	-1.2522	-0.00051452	-1.2356	-0.00050769	410.87649934828005	66.668	0.70673	66.668	66.369	67.076	0					54	24	3	0	0	0	0.25123	1	16709	16709		12.241	0.74595	1	405420			29440	11921	17032	17033	36276	36276					0.0033219700417248532
MFMWSRIIF	9	Unmodified	_MFMWSRIIF_					0	0	0		ENST00000562354.2_1_16:31718295-31719595:+|nuORF	ENST00000562354.2_1_16:31718295-31719595:+|nuORF	ENST00000562354.2_1_16:31718295-31719595:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8766174316406	3	410.876924	1229.60894	0.016855	6.9253E-06	-1.1244	-0.00046197	-1.1075	-0.00045504	410.87650834158273	66.696	0.93787	66.683	66.327	67.265	-0.013588					71	33	4	0	0	0	0.27726	1	16712	16712		12.241	1.3417	1	547020			29441	11921	17032	17033	36277	36277					0.0033219700417248532
MFNKFEKN	8	Unmodified	_MFNKFEKN_					0	0	0			REV__ENSG00000104332|ENST00000220772|SFRP1	REV__ENSG00000104332|ENST00000220772|SFRP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.251220703125	2	529.260402	1056.50625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.444	1	35.444	34.944	35.944	0								0	0	0	0.33717	1	7098	7098		20.454	3.5113	1		+		29442	14405	17033	17034	36278	36278					-0.019741724629284363
MFNKFEKN	8	Unmodified	_MFNKFEKN_					0	0	0			REV__ENSG00000104332|ENST00000220772|SFRP1	REV__ENSG00000104332|ENST00000220772|SFRP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2510375976562	2	529.260402	1056.50625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.307	1	35.384	34.884	35.884	0.077377								0	0	0	0.33717	1	7049	7049		20.454	3.5113	1		+		29443	14405	17033	17034	36279	36279					-0.019741724629284363
MFNPMYALF	9	2 Oxidation (M)	_M(Oxidation (M))FNPM(Oxidation (M))YALF_		M(1)FNPM(1)YALF		M(57)FNPM(57)YALF	0	0	2		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.2567749023438	2	583.256471	1164.49839	0.11673	6.8086E-05	0.58965	0.00034392	0.70638	0.000412	583.2567058664997	76.192	0.62723	76.192	75.903	76.53	0					52	22	3	0	0	0	0.037693	2	19558	19558;19611		57.471	40.529	1	536450			29444	1286	17034	17035	36280;36281	36280		157;158			-0.07728067774723968
MFNPMYALF	9	2 Oxidation (M)	_M(Oxidation (M))FNPM(Oxidation (M))YALF_		M(1)FNPM(1)YALF		M(64)FNPM(64)YALF	0	0	2		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.2566528320312	2	583.256471	1164.49839	0.15684	9.1478E-05	0.64835	0.00037816	0.80519	0.00046963	583.2568118222941	76.082	0.65021	76.136	75.862	76.512	0.053413					54	22	4	0	0	0	0.065123	1	19554	19554		64.236	47.294	1	450620			29445	1286	17034	17035	36282	36282		157;158			-0.07728067774723968
MFNPMYALF	9	2 Oxidation (M)	_M(Oxidation (M))FNPM(Oxidation (M))YALF_		M(1)FNPM(1)YALF		M(57)FNPM(57)YALF	0	0	2		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.2566528320312	2	583.256471	1164.49839	0.33863	0.00019751	0.43791	0.00025541	0.77654	0.00045292	583.2567637843936	76.173	0.67982	76.141	75.829	76.509	-0.031487					50	24	3	0	0	0	0.037693	2	19584	19584;19628		57.471	40.529	1	531570			29446	1286	17034	17035	36283;36284	36283		157;158			-0.07728067774723968
MFPGVLLP	8	Unmodified	_MFPGVLLP_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89962405-89970614:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.74774169921875	2	437.248775	872.482997	0.10803	4.7237E-05	0.67063	0.00029323	0.77866	0.00034047	437.2492542453307	65.493	0.40253	65.482	65.372	65.774	-0.011337					21	14	2	0	0	0	0.34297	1	16346	16346		6.3541	0	1	220140			29447	4351	17035	17036	36285	36285					0.041654334904023926
MFRTRKKKW	9	Unmodified	_MFRTRKKKW_					0	0	0		ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2	ENSG00000109756|ENST00000691494|RAPGEF2	ENSG00000109756|ENST00000691494|RAPGEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.8746337890625	2	640.874059	1279.73357	0.15324	9.8208E-05	0.72604	0.0004653	0.87929	0.00056351	640.8747072043961	95.638	0.28322	95.638	95.491	95.774	0					39	29	2	0	0	0	0.35512	1	25566	25566		0.6015	0.14316	1	93084			29448	2269	17036	17037	36286	36286					0.10488830535723537
MFRWHDKSF	9	Unmodified	_MFRWHDKSF_					0	0	0			REV__L1MEc_dup2393|chr2:91786407-91787312:+|1.5245654449372528|0.182273929221285|3.06|513.0|21|2|sense	REV__L1MEc_dup2393|chr2:91786407-91787312:+|1.5245654449372528|0.182273929221285|3.06|513.0|21|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.353271484375	2	627.29785	1252.58115	0.2966	0.00018606	-0.69773	-0.00043769	-0.40113	-0.00025163	627.2972338501618	58.972	0.70898	58.958	58.631	59.34	-0.014267					48	24	3	0	0	0	0.26145	1	14237	14237		2.0598	0.21551	1	439120	+		29449	22799	17037	17038	36287	36287					-0.03503989931709839
MFSLTNPSP	9	Unmodified	_MFSLTNPSP_					0	0	0		ENST00000493669.2_1_1:28733953-28817463:+|nuORF	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.2369689941406	2	497.239135	992.463718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.54	1	88.629	88.129	89.129	0.089195								0	0	0	0.25499	1	23385	23385		4.756	0	1				29450	11205	17038	17039	36288	36288					-0.032815675911592734
MFSLTNPSP	9	Unmodified	_MFSLTNPSP_					0	0	0		ENST00000493669.2_1_1:28733953-28817463:+|nuORF	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	ENST00000493669.2_1_1:28733953-28817463:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2377624511719	2	497.239135	992.463718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.48	1	90.48	89.98	90.98	0.0003891								0	0	0	0.25499	1	23973	23973		4.756	0.81161	1				29451	11205	17038	17039	36289	36289					-0.032815675911592734
MFSPKKHS	8	Unmodified	_MFSPKKHS_					0	0	0		nc|ENSG00000125485|Q9H8H2-6|DDX31;ENST00000482620.1_1_9:135536593-135545636:-|nuORF;nc|ENSG00000125485|Q9H8H2-3|DDX31;nc|ENSG00000125485|Q9H8H2-4|DDX31;ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2-2|DDX31;nc|ENSG00000125485|Q9H8H2|DDX31	nc|ENSG00000125485|Q9H8H2-6|DDX31	nc|ENSG00000125485|Q9H8H2-6|DDX31	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2843933105469	2	481.249837	960.485122	0.2652	0.00012763	1.037	0.00049907	1.3022	0.0006267	481.25178415659076	91.023	1.1242	91.114	90.581	91.705	0.090668					203	85	4	0	0	0	0.34247	1	24002	24002		8.5933	2.2392	1	2073600			29452	3211	17039	17040	36290	36290					0.003298622282159158
MFSSDAST	8	Unmodified	_MFSSDAST_					0	0	0			REV__ENST00000255764.3_1_5:6377288-6377348:-|nuORF	REV__ENST00000255764.3_1_5:6377288-6377348:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.59765625	2	423.170918	844.327284	-0.36479	-0.00015437	-1.4637	-0.00061939	-1.8285	-0.00077375	423.17031969571264	97.505	0.14997	97.505	97.379	97.529	0					19	15	2	0	0	0	0.344	1	26058	26058		0.69038	0	1	37093	+		29453	19551	17040	17041	36291	36291					-0.10110681821686285
MFVHHLVTI	9	Unmodified	_MFVHHLVTI_					0	0	0		ENST00000547138.5_1_12:50529516-50531570:-|nuORF;ENST00000546676.1_1_12:50529513-50531570:-|nuORF;ENST00000380189.8_1_12:50527593-50531570:-|nuORF;nc|ENSG00000139624|Q8N5B7-2|CERS5;ENSG00000139624|ENST00000317551|CERS5	ENST00000547138.5_1_12:50529516-50531570:-|nuORF	ENST00000547138.5_1_12:50529516-50531570:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3133544921875	2	548.802237	1095.58992	0.38812	0.000213	4.3428	0.0023833	4.7309	0.0025963	548.8047240132937	59.091	0.35066	59.091	58.864	59.215	0					21	12	2	0	0	0	0.24311	1	14299	14299		16.942	6.1184	1	287200			29454	4249	17041	17042	36292	36292					0.04594983704782862
MFVHHLVTI	9	Unmodified	_MFVHHLVTI_					0	0	0		ENST00000547138.5_1_12:50529516-50531570:-|nuORF;ENST00000546676.1_1_12:50529513-50531570:-|nuORF;ENST00000380189.8_1_12:50527593-50531570:-|nuORF;nc|ENSG00000139624|Q8N5B7-2|CERS5;ENSG00000139624|ENST00000317551|CERS5	ENST00000547138.5_1_12:50529516-50531570:-|nuORF	ENST00000547138.5_1_12:50529516-50531570:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3135986328125	2	548.802237	1095.58992	0.53682	0.00029461	4.2639	0.0023401	4.8007	0.0026347	549.3058150345644	58.89	0.514	58.981	58.612	59.126	0.091305					32	17	3	0	0	0	0.24311	1	14246	14246		16.942	2.104	1	336890			29455	4249	17041	17042	36293	36293					0.04594983704782862
MFVPEGTQI	9	Unmodified	_MFVPEGTQI_					0	0	0		nc|ENSG00000197847|A6NK97|SLC22A20P	nc|ENSG00000197847|A6NK97|SLC22A20P	nc|ENSG00000197847|A6NK97|SLC22A20P	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2520751953125	2	511.254785	1020.49502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.944	1	98.944	98.444	99.444	0								0	0	0	0.24522	1	26478	26478		7.9102	2.6795	1				29456	12901	17042	17043	36294	36294					-0.014409945570605487
MFVPEGTQI	9	Unmodified	_MFVPEGTQI_					0	0	0		nc|ENSG00000197847|A6NK97|SLC22A20P	nc|ENSG00000197847|A6NK97|SLC22A20P	nc|ENSG00000197847|A6NK97|SLC22A20P	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.25335693359375	2	511.254785	1020.49502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.542	1	98.604	98.104	99.104	0.061516								0	0	0	0.24522	1	26377	26377		7.9102	1.7044	1				29457	12901	17042	17043	36295	36295					-0.014409945570605487
MFYELAEQE	9	Unmodified	_MFYELAEQE_					0	0	0			REV__ENSG00000121879|ENST00000263967|PIK3CA	REV__ENSG00000121879|ENST00000263967|PIK3CA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.2512817382812	2	580.25244	1158.49033	0.34575	0.00020062	3.0366	0.001762	3.3823	0.0019626	580.2519667575613	76.852	2.0003	76.906	76.189	78.19	0.053558					146	71	3	0	0	0	0.25843	1	19740	19740		5.7319	0	1	353920	+		29458	15133	17043	17044	36296	36296					-0.08257923490486974
MFYELAEQE	9	Unmodified	_MFYELAEQE_					0	0	0			REV__ENSG00000121879|ENST00000263967|PIK3CA	REV__ENSG00000121879|ENST00000263967|PIK3CA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	580.25244	1158.49033	0.42469	0.00024643	3.7677	0.0021862	4.1924	0.0024327	580.2523185208539	76.928	1.828	76.928	76.367	78.195	0	0.014374	0.00041798	NaN	5.7319	110	67	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363260	+		29459	15133	17043	17044							-0.08257923490486974
MFYELAEQE	9	Unmodified	_MFYELAEQE_					0	0	0			REV__ENSG00000121879|ENST00000263967|PIK3CA	REV__ENSG00000121879|ENST00000263967|PIK3CA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	580.25244	1158.49033	0.58358	0.00033862	3.4602	0.0020078	4.0438	0.0023464	580.2522252817861	76.938	1.6969	76.907	76.395	78.092	-0.031334	-0.0067031	6.1104E-05	NaN	5.7319	111	61	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335970	+		29460	15133	17043	17044							-0.08257923490486974
MGCVFFCTF	9	Unmodified	_MGCVFFCTF_					0	0	0			REV__Harlequin-int_dup68|chr1:206053001-206053902:+|4.829576727494633|0.4316687424735471|3.48|537.0|15|2|sense	REV__Harlequin-int_dup68|chr1:206053001-206053902:+|4.829576727494633|0.4316687424735471|3.48|537.0|15|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2747192382812	2	527.713385	1053.41222	0.48667	0.00025682	0.84387	0.00044532	1.3305	0.00070215	527.7136640318855	79.982	0.66798	79.982	79.77	80.438	0					52	24	3	0	0	0	0.25417	1	20831	20831		8.5933	0.68312	1	369800	+		29461	22735	17044	17045	36297	36297					-0.1123535088108838
MGCVFFCTF	9	Unmodified	_MGCVFFCTF_					0	0	0			REV__Harlequin-int_dup68|chr1:206053001-206053902:+|4.829576727494633|0.4316687424735471|3.48|537.0|15|2|sense	REV__Harlequin-int_dup68|chr1:206053001-206053902:+|4.829576727494633|0.4316687424735471|3.48|537.0|15|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7139892578125	2	527.713385	1053.41222	0.50221	0.00026502	0.94147	0.00049683	1.4437	0.00076185	527.7137064768484	80.084	0.69818	80.056	79.804	80.503	-0.028122					53	23	3	0	0	0	0.27532	1	20768	20768		12.532	0.89125	1	410800	+		29462	22735	17044	17045	36298	36298					-0.1123535088108838
MGCVFFCTF	9	Unmodified	_MGCVFFCTF_					0	0	0			REV__Harlequin-int_dup68|chr1:206053001-206053902:+|4.829576727494633|0.4316687424735471|3.48|537.0|15|2|sense	REV__Harlequin-int_dup68|chr1:206053001-206053902:+|4.829576727494633|0.4316687424735471|3.48|537.0|15|2|sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	527.713385	1053.41222	0.41423	0.0002186	0.97443	0.00051422	1.3887	0.00073281	527.7137061716903	79.977	0.59252	80.038	79.774	80.366	0.061417	0.012992	5.5506E-05	NaN	12.532	61	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390560	+		29463	22735	17044	17045							-0.1123535088108838
MGCVFFCTF	9	Unmodified	_MGCVFFCTF_					0	0	0			REV__Harlequin-int_dup68|chr1:206053001-206053902:+|4.829576727494633|0.4316687424735471|3.48|537.0|15|2|sense	REV__Harlequin-int_dup68|chr1:206053001-206053902:+|4.829576727494633|0.4316687424735471|3.48|537.0|15|2|sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	527.713385	1053.41222	0.50221	0.00026502	0.94147	0.00049683	1.4437	0.00076185	527.7137064768484	80.084	0.69818	80.056	79.804	80.503	-0.028122	0.030566	2.0728E-05	NaN	12.532	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	410800	+		29464	22735	17044	17045							-0.1123535088108838
MGDMGIADLL	10	Unmodified	_MGDMGIADLL_					0	0	0		CON__ENSEMBL:ENSBTAP00000023402	CON__ENSEMBL:ENSBTAP00000023402	CON__ENSEMBL:ENSBTAP00000023402	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3174438476562	2	518.246103	1034.47765	0.43993	0.00022799	0.099855	5.175E-05	0.53978	0.00027974	518.2460262542438	65.822	0.63754	65.81	65.558	66.195	-0.011337					36	22	2	0	0	0	0.27337	1	16445	16445		29.082	10.935	1	141980		+	29465	201	17045	17046	36299	36299					-0.038206581543818174
MGFCPFSG	8	Unmodified	_MGFCPFSG_					0	0	0			REV__nc|ENSG00000177324|Q8NDZ0-2|BEND2	REV__nc|ENSG00000177324|Q8NDZ0-2|BEND2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.59759521484375	2	423.169667	844.324781	-0.21439	-9.0723E-05	1.0709	0.00045317	0.85651	0.00036245	423.17004129571137	97.24	0.29182	97.311	97.26	97.552	0.070465					42	28	2	0	0	0	0.344	1	26031	26031		0.69038	0.69038	1	82310	+		29466	17983	17046	17047	36300	36300					-0.10360808760333384
MGHNLWGPIF	10	Unmodified	_MGHNLWGPIF_					0	0	0			REV__ENST00000470265.1_1_6:143486230-143507836:+|nuORF	REV__ENST00000470265.1_1_6:143486230-143507836:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8338623046875	2	586.289494	1170.56443	0.36997	0.00021691	-3.0968	-0.0018156	-2.7268	-0.0015987	586.2870999621434	79.934	0.46754	79.906	79.644	80.112	-0.028931					18	16	2	0	0	0	0.31267	1	20734	20734		14.838	3.198	1	102130	+		29467	16348	17047	17048	36301	36301					-0.014024908176679673
MGIAHLLVM	9	Unmodified	_MGIAHLLVM_					0	0	0		ENSG00000151376|ENST00000524826|ME3;ME3|p.V396Sfs*8|1|0.05|ENSG00000151376|chr11:86448202-86448202|T/-|frameshift_variant	ENSG00000151376|ENST00000524826|ME3	ENSG00000151376|ENST00000524826|ME3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.3088684082031	2	492.772091	983.529629	0.23085	0.00011375	-1.4126	-0.00069608	-1.1817	-0.00058233	492.7715003283927	25.627	0.21011	25.627	25.504	25.714	0					9	6	2	0	0	0	0.25291	1	4109	4109		9.3474	1.4373	1	49529			29468	4959	17048	17049	36302	36302					0.03720550050036309
MGLECVDIL	9	Unmodified	_MGLECVDIL_					0	0	0		nc|ENSG00000112029|Q9UKT4-2|FBXO5;ENSG00000112029|ENST00000229758|FBXO5	nc|ENSG00000112029|Q9UKT4-2|FBXO5	nc|ENSG00000112029|Q9UKT4-2|FBXO5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.30413818359375	2	496.743196	991.471839	0.40347	0.00020042	-0.26096	-0.00012963	0.14251	7.0791E-05	496.74292369417935	74.774	0.46635	74.826	74.585	75.051	0.052361					22	16	2	0	0	0	0.22596	1	19146	19146		15.847	0	1	247730			29469	2406	17049	17050	36303	36303					-0.02423756666053123
MGPSWHFL	8	Unmodified	_MGPSWHFL_					0	0	0		HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|241|2|anti-sense	HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|241|2|anti-sense	HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|241|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.3055419921875	2	487.73128	973.448008	0.008323	4.0594E-06	-0.26251	-0.00012803	-0.25418	-0.00012397	487.7319135027368	12.293	0.11983	12.196	12.148	12.268	-0.096607					5	3	2	0	0	0	0.34434	1	105	105		0.79363	0	1	12033			29470	12421	17050	17051	36304	36304					-0.039778093175641516
MGPSWHFL	8	Unmodified	_MGPSWHFL_					0	0	0		HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|241|2|anti-sense	HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|241|2|anti-sense	HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|241|2|anti-sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	487.73128	973.448008	-0.078061	-3.8073E-05	0.56222	0.00027421	0.48416	0.00023614	487.73139544270884	12.268	0.11249	12.268	12.219	12.332	0	0.036013	5.3576E-05	NaN	0.79363	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9466.6			29471	12421	17050	17051							-0.039778093175641516
MGSKNRQLD	9	Unmodified	_MGSKNRQLD_					0	0	0		ENST00000510237.5_1_18:13103579-13124766:+|nuORF	ENST00000510237.5_1_18:13103579-13124766:+|nuORF	ENST00000510237.5_1_18:13103579-13124766:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7984619140625	2	524.76384	1047.51313	0.27331	0.00014342	0.0043281	2.2712E-06	0.27763	0.00014569	524.7637371230426	17.805	0.43875	17.687	17.489	17.928	-0.11739					19	14	2	0	0	0	0.25988	1	1688	1688		3.9444	0.3479	1	36825			29472	11370	17051	17052	36305	36305					-0.008728595823640717
MGSKNRQLD	9	Unmodified	_MGSKNRQLD_					0	0	0		ENST00000510237.5_1_18:13103579-13124766:+|nuORF	ENST00000510237.5_1_18:13103579-13124766:+|nuORF	ENST00000510237.5_1_18:13103579-13124766:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	524.76384	1047.51313	0.4479	0.00023504	-0.14456	-7.5858E-05	0.30334	0.00015918	524.763808473317	17.622	0.35848	17.622	17.477	17.835	0	-0.032701	-5.8343E-05	NaN	3.9444	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30677			29473	11370	17051	17052							-0.008728595823640717
MHDHADYGF	9	Unmodified	_MHDHADYGF_					0	0	0		nc|ENSG00000104687|P00390-5|GSR;nc|ENSG00000104687|P00390-4|GSR;nc|ENSG00000104687|P00390-2|GSR;nc|ENSG00000104687|P00390-3|GSR;ENSG00000104687|ENST00000221130|GSR	nc|ENSG00000104687|P00390-5|GSR	nc|ENSG00000104687|P00390-5|GSR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.31640625	2	546.713816	1091.41308	0.35513	0.00019416	0.41557	0.0002272	0.7707	0.00042135	546.7139847862202	64.882	0.89684	64.882	64.621	65.518	0					100	32	5	0	0	0	0.25879	1	16221	16221		2.0598	0	1	1905900			29474	1906	17052	17053	36306	36306					-0.1289709691616281
MHESDVQK	8	Unmodified	_MHESDVQK_					0	0	0			REV__nc|ENSG00000085224|P46100-6|ATRX	REV__nc|ENSG00000085224|P46100-6|ATRX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.27490234375	2	487.224017	972.43348	-0.042026	-2.0476E-05	0.86494	0.00042142	0.82291	0.00040094	487.2242662579887	14.305	0.25748	14.305	14.191	14.448	0					13	8	2	0	0	0	0.34247	1	709	709		8.5933	0	1	32875	+		29475	13956	17053	17054	36307	36307					-0.053839262563542434
MHFKFPIE	8	Unmodified	_MHFKFPIE_					0	0	0			REV__nc|ENSG00000142453|Q86X55-1|CARM1	REV__nc|ENSG00000142453|Q86X55-1|CARM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7998046875	2	524.767863	1047.52117	0.64139	0.00033658	0.8573	0.00044988	1.4987	0.00078647	525.268503231612	83.507	0.78825	83.584	83.137	83.925	0.077095					40	30	2	0	0	0	0.34319	1	21829	21829		5.7604	1.4312	1	101650	+		29476	16117	17054	17055	36308	36308					-0.0006868059492717293
MHGHLLRPG	9	Unmodified	_MHGHLLRPG_					0	0	0			REV__ENST00000460788.5_1_2:241655965-241656310:-|nuORF	REV__ENST00000460788.5_1_2:241655965-241656310:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2739562988281	2	509.274178	1016.5338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.28	1	115.28	114.78	115.78	0								0	0	0	0.26334	1	29880	29880		2.0598	0.57785	1		+		29477	21209	17055	17056	36309	36309					0.026197755879707074
MHGLENDEF	9	Unmodified	_MHGLENDEF_					0	0	0		ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8262939453125	2	546.226756	1090.43896	0.62746	0.00034273	0.67095	0.00036649	1.2984	0.00070922	546.2266750902644	62.352	0.63683	62.344	62.094	62.731	-0.0085526					57	23	4	0	0	0	0.25417	1	15332	15332		4.756	0	1	562620			29478	3137	17056	17057	36310	36310					-0.1026424746455632
MHIPPGLK	8	Unmodified	_MHIPPGLK_					0	0	0		ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000162409|ENST00000371244|PRKAA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.757568359375	2	446.757298	891.500044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.596	1	37.689	37.189	38.189	0.093018								0	0	0	0.35251	1	7750	7750		13.508	4.1604	1				29479	5569	17057	17058	36311	36311					0.049953540962064835
MHPRQLRLSK	10	Unmodified	_MHPRQLRLSK_					0	0	0			REV__nc|ENSG00000132670|P18433-6|PTPRA	REV__nc|ENSG00000132670|P18433-6|PTPRA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3688354492188	2	633.366598	1264.71864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.06	1	115.06	114.56	115.56	0								0	0	0	0.38187	1	29829	29829		1.3295	0.25807	1		+		29480	15585	17058	17059	36312	36312					0.096873386677089
MHPRQLRLSK	10	Unmodified	_MHPRQLRLSK_					0	0	0			REV__nc|ENSG00000132670|P18433-6|PTPRA	REV__nc|ENSG00000132670|P18433-6|PTPRA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3689575195312	2	633.366598	1264.71864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.77	1	118.77	118.27	119.27	0								0	0	0	0.38187	1	30670	30670		1.3295	0.72803	1		+		29481	15585	17058	17059	36313	36313					0.096873386677089
MHPRQLRLSK	10	Unmodified	_MHPRQLRLSK_					0	0	0			REV__nc|ENSG00000132670|P18433-6|PTPRA	REV__nc|ENSG00000132670|P18433-6|PTPRA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.36865234375	2	633.366598	1264.71864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.92	1	116.95	116.45	117.45	0.020988								0	0	0	0.38187	1	30326	30326		1.3295	0	1		+		29482	15585	17058	17059	36314	36314					0.096873386677089
MHRSGSSWISL	11	Unmodified	_MHRSGSSWISL_					0	0	0			REV__nc|ENSG00000110514|Q8WXG6-6|MADD	REV__nc|ENSG00000110514|Q8WXG6-6|MADD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.89202880859375	3	420.87664	1259.60809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.103	1	23.058	22.558	23.558	-0.044867								0	0	0	0.33176	1	3344	3344		6.6235	0	1		+		29483	14674	17059	17060	36315	36315					-0.0113292611115412
MHTYSFYLT	9	Unmodified	_MHTYSFYLT_					0	0	0			REV__nc|ENSG00000090530|Q8IVL5-2|P3H2	REV__nc|ENSG00000090530|Q8IVL5-2|P3H2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.78759765625	2	581.765517	1161.51648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.391	1	84.468	83.968	84.968	0.077095								0	0	0	0.22065	1	22114	22114		15.847	5.0233	1		+		29484	14044	17060	17061	36316	36316					-0.05781609528366971
MHVCLRTP	8	Unmodified	_MHVCLRTP_					0	0	0		ENST00000300976.8_1_19:18780088-18780439:+|nuORF	ENST00000300976.8_1_19:18780088-18780439:+|nuORF	ENST00000300976.8_1_19:18780088-18780439:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.29010009765625	2	478.743865	955.473177	0.241	0.00011538	-0.63752	-0.00030521	-0.39653	-0.00018983	478.74357985228454	16.631	0.87674	16.568	16.066	16.943	-0.062532					59	30	3	0	0	0	0.34272	1	1340	1340		7.9102	0	1	107960			29485	9222	17061	17062	36317	36317					-0.0063407778661712655
MHYCYLSLK	9	Unmodified	_MHYCYLSLK_					0	0	0		ENST00000155926.8_1_2:12881652-12881745:+|nuORF	ENST00000155926.8_1_2:12881652-12881745:+|nuORF	ENST00000155926.8_1_2:12881652-12881745:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3089599609375	2	579.277738	1156.54092	0.6021	0.00034879	-1.1401	-0.00066045	-0.53802	-0.00031167	579.2771980425631	50.516	0.62927	50.516	50.025	50.654	0					37	22	3	0	0	0	0.23784	1	11736	11736		19.257	9.0736	1	159270			29486	8782	17062	17063	36318	36318					-0.031086726464991443
MIADFLREHK	10	Unmodified	_MIADFLREHK_					0	0	0		nc|ENSG00000176290|Q96R72|OR4K3	nc|ENSG00000176290|Q96R72|OR4K3	nc|ENSG00000176290|Q96R72|OR4K3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.8603515625	2	630.33189	1258.64923	0.54988	0.00034661	-2.362	-0.0014888	-1.8121	-0.0011422	630.3304833700271	84.072	0.51366	84.055	83.998	84.512	-0.016823					34	21	2	0	0	0	0.31691	1	22103	22103		5.7319	0	1	215520			29487	12852	17063	17064	36319	36319					0.030248349283056086
MIADKHVVL	9	Unmodified	_MIADKHVVL_					0	0	0			REV__ENSG00000176928|ENST00000652361|GCNT4	REV__ENSG00000176928|ENST00000652361|GCNT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8080444335938	2	513.294245	1024.57394	-0.016147	-8.2879E-06	-2.4272	-0.0012459	-2.4433	-0.0012541	513.2929931125018	60.334	0.47374	60.429	60.077	60.55	0.095093					38	17	4	0	0	0	0.25314	1	14671	14671		15.847	1.0089	1	1853500	+		29488	17960	17064	17065	36320	36320					0.06263277467883199
MIAECKKLF	9	Unmodified	_MIAECKKLF_					0	0	0		ENSG00000164741|ENST00000276297|DLC1;nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1	ENSG00000164741|ENST00000276297|DLC1	ENSG00000164741|ENST00000276297|DLC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.8194580078125	2	541.790481	1081.56641	0.64987	0.00035209	1.547	0.00083815	2.1969	0.0011902	541.7913112265156	40.575	0.4015	40.575	40.445	40.847	0					23	14	2	0	0	0	0.22674	1	8648	8648		17.113	0	1	147340			29489	5871	17065	17066	36321	36321					0.02888801875928948
MICHRLISQL	10	Unmodified	_MICHRLISQL_					0	0	0		ENST00000308302.3_1_1:204183033-204183192:-|nuORF	ENST00000308302.3_1_1:204183033-204183192:-|nuORF	ENST00000308302.3_1_1:204183033-204183192:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2384948730469	3	405.222983	1212.64712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.681	1	21.58	21.08	22.08	-0.10034								0	0	0	0.3629	1	2917	2917		5.4027	0.35519	1				29490	9290	17066	17067	36322	36322					0.04930082918849621
MICPFFSIT	9	Unmodified	_MICPFFSIT_					0	0	0			REV__ENSG00000221938|ENST00000641068|OR2A14	REV__ENSG00000221938|ENST00000641068|OR2A14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.296142578125	2	529.756107	1057.49766	0.77518	0.00041065	1.195	0.00063304	1.9701	0.0010437	529.7559174283791	60.481	0.31293	60.576	60.526	60.839	0.095093					17	10	2	0	0	0	0.23783	1	14854	14854		12.532	0	1	265850	+		29491	19100	17067	17068	36323	36323					-0.02878862423767714
MIDISLDGF	9	Unmodified	_MIDISLDGF_					0	0	0		ENST00000527365.1_1_2:131798892-131801189:+|nuORF;ENST00000490728.5_1_2:131797582-131799036:+|nuORF;nc|ENSG00000136002|Q9NR80-3|ARHGEF4;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4;ENSG00000136002|ENST00000409359|ARHGEF4	ENST00000527365.1_1_2:131798892-131801189:+|nuORF	ENST00000527365.1_1_2:131798892-131801189:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2772216796875	2	505.746793	1009.47903	0.54465	0.00027546	-0.46204	-0.00023368	0.082609	4.1779E-05	505.7466708958568	52.902	0.32603	52.953	52.682	53.008	0.051334					15	11	2	0	0	0	0.24739	1	12402	12402		8.5933	0	1	191230			29492	3933	17068	17069	36324	36324					-0.02532700793983622
MIDTYMTCL	9	Unmodified	_MIDTYMTCL_					0	0	0			REV__ENSG00000175520|ENST00000311659|UBQLN3	REV__ENSG00000175520|ENST00000311659|UBQLN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2672119140625	2	545.734514	1089.45447	0.80437	0.00043897	-1.6309	-0.00089006	-0.82657	-0.00045109	545.7340083532812	64.003	0.60259	63.993	63.658	64.26	-0.0095367					30	21	2	0	0	0	0.23783	1	15869	15869		18.135	6.4947	1	303150	+		29493	17895	17069	17070	36325	36325					-0.08667420263350323
MIEEDYVL	8	Unmodified	_MIEEDYVL_					0	0	0			REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C;REV__ENSG00000198837|ENST00000361217|DENND4B	REV__ENSG00000198837|ENST00000361217|DENND4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2852478027344	2	506.238801	1010.46305	0.80147	0.00040574	4.0989	0.002075	4.9003	0.0024807	506.2402657679673	56.279	0.35434	56.357	56.221	56.575	0.078674					13	12	2	0	0	0	0.32778	1	13556	13556		14.582	1.0738	1	199040	+		29494	18872;15847	17070	17071	36326	36326					-0.04176407030865903
MIEKLTFLNL	10	Unmodified	_MIEKLTFLNL_					0	0	0		ENSG00000189045|ENST00000601380|ANKDD1B	ENSG00000189045|ENST00000601380|ANKDD1B	ENSG00000189045|ENST00000601380|ANKDD1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.2351989746094	3	407.901904	1220.68388	-0.32433	-0.00013229	-0.12841	-5.2379E-05	-0.45274	-0.00018467	408.23557851153987	15.302	1.6161	15.302	15.072	16.689	0					128	56	4	0	0	0	0.38745	1	989	989		5.7834	1.3773	1	345710			29495	7794	17071	17072	36327	36327					0.08236658016380716
MIEKLTFLNL	10	Unmodified	_MIEKLTFLNL_					0	0	0		ENSG00000189045|ENST00000601380|ANKDD1B	ENSG00000189045|ENST00000601380|ANKDD1B	ENSG00000189045|ENST00000601380|ANKDD1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.56915283203125	3	407.901904	1220.68388	-0.19332	-7.8854E-05	-0.23047	-9.4007E-05	-0.42378	-0.00017286	408.2353663539232	15.527	1.5793	15.417	15.093	16.672	-0.10981					125	54	4	0	0	0	0.31969	1	1085	1085		5.7834	0.88642	1	374960			29496	7794	17071	17072	36328	36328					0.08236658016380716
MIESTPMSIAG	11	Unmodified	_MIESTPMSIAG_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8468627929688	2	568.769942	1135.52533	0.39679	0.00022568	-0.82797	-0.00047092	-0.43118	-0.00024524	568.7693313404766	69.146	0.86663	69.218	68.88	69.747	0.071938					77	30	3	0	0	0	0.32667	1	17423	17423		8.7454	1.4562	1	675530			29497	2237	17072	17073	36329	36329					-0.03701003954211046
MIESTPMSIAG	11	Unmodified	_MIESTPMSIAG_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	568.769942	1135.52533	0.15712	8.9364E-05	-0.73382	-0.00041737	-0.5767	-0.00032801	568.7694454461939	69.192	1.0016	69.192	68.786	69.787	0	-0.035318	-5.724E-05	NaN	8.7454	82	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	646180			29498	2237	17072	17073							-0.03701003954211046
MIESTPMSIAG	11	Unmodified	_MIESTPMSIAG_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	568.769942	1135.52533	0.18251	0.00010381	-0.52615	-0.00029926	-0.34364	-0.00019545	568.7695618279315	69.293	0.75159	69.271	68.84	69.591	-0.022087	0.044532	0.00017899	NaN	8.7454	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	669260			29499	2237	17072	17073							-0.03701003954211046
MIFKCHPSL	9	Unmodified	_MIFKCHPSL_					0	0	0			REV__ENST00000551270.1_1_12:104283206-104309165:-|nuORF	REV__ENST00000551270.1_1_12:104283206-104309165:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8634643554688	2	538.274998	1074.53544	0.14698	7.9115E-05	3.1549	0.0016982	3.3018	0.0017773	538.7756838981863	81.117	0.49672	81.182	80.961	81.457	0.065102					59	25	3	0	0	0	0.23784	1	21186	21186		13.906	0	1	91994	+		29500	22206	17073	17074	36330	36330					0.001156485617002545
MIGAKPDPIF	10	Unmodified	_MIGAKPDPIF_					0	0	0			REV__nc|ENSG00000157404|P10721-2|KIT	REV__nc|ENSG00000157404|P10721-2|KIT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2955322265625	2	544.794078	1087.5736	0.27364	0.00014908	-1.6307	-0.00088842	-1.3571	-0.00073935	545.2952675267511	95.163	0.7454	95.163	94.745	95.491	0					114	67	2	0	0	0	0.37133	1	25417	25417		8.7454	0.83525	1	108820	+		29501	16783	17074	17075	36331	36331					0.03331857748003131
MIHKATRK	8	Unmodified	_MIHKATRK_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.771728515625	2	492.792204	983.569854	-0.048667	-2.3983E-05	4.4865	0.0022109	4.4379	0.0021869	492.79405500565343	13.331	0.14369	13.264	13.215	13.359	-0.067496					7	4	2	0	0	0	0.34313	1	393	393		6.7232	1.4925	1	19751	+		29502	18755	17075	17076	36332	36332					0.07741232764817596
MIIICCVVL	9	Unmodified	_MIIICCVVL_					0	0	0		ENSG00000099365|ENST00000215095|STX1B	ENSG00000099365|ENST00000215095|STX1B	ENSG00000099365|ENST00000215095|STX1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.3194580078125	2	503.778527	1005.5425	0.30548	0.00015389	-0.28415	-0.00014315	0.021332	1.0747E-05	504.28078924775417	80.748	1.5756	80.748	80.294	81.87	0					144	69	3	0	0	0	0.22431	1	21034	21034		14.582	0	1	396600			29503	1488	17076	17077	36333	36333					0.03995245117914692
MIILECKPV	9	Unmodified	_MIILECKPV_					0	0	0			REV__ENST00000586299.1_1_17:76672425-76672650:-|nuORF	REV__ENST00000586299.1_1_17:76672425-76672650:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2805786132812	2	523.292856	1044.57116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.904	1	33.904	33.404	34.404	0								0	0	0	0.21353	1	6628	6628		18.146	2.2992	1		+		29504	22516	17077	17078	36334	36334					0.05065686018701854
MIIRRHTI	8	Unmodified	_MIIRRHTI_					0	0	0		nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF	nc|ENSG00000041515|Q9Y6X6-3|MYO16	nc|ENSG00000041515|Q9Y6X6-3|MYO16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7671508789062	2	520.313303	1038.61205	0.6587	0.00034273	-2.2343	-0.0011625	-1.5756	-0.00081979	520.3122116896734	65.922	0.83347	65.922	65.405	66.239	0					37	29	2	0	0	0	0.34319	1	16551	16551		5.7604	3.4577	1	262810			29505	606	17078	17079	36335	36335					0.09429208173219195
MIIRRHTI	8	Unmodified	_MIIRRHTI_					0	0	0		nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF	nc|ENSG00000041515|Q9Y6X6-3|MYO16	nc|ENSG00000041515|Q9Y6X6-3|MYO16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	520.313303	1038.61205	0.57176	0.0002975	-2.0785	-0.0010815	-1.5067	-0.00078396	520.312229870045	65.725	0.6778	65.814	65.491	66.169	0.088882	-0.07894	9.1179E-05	NaN	2.5775	32	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253660			29506	606	17078	17079							0.09429208173219195
MIIRRHTI	8	Unmodified	_MIIRRHTI_					0	0	0		nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF	nc|ENSG00000041515|Q9Y6X6-3|MYO16	nc|ENSG00000041515|Q9Y6X6-3|MYO16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	520.313303	1038.61205	0.48325	0.00025144	-2.1722	-0.0011302	-1.6889	-0.00087878	520.3120867872201	65.956	0.8017	65.943	65.42	66.222	-0.013588	0.049731	-6.338E-06	NaN	2.5775	35	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376240			29507	606	17078	17079							0.09429208173219195
MIIVSDCALP	10	Unmodified	_MIIVSDCALP_					0	0	0		ENST00000559314.5_1_14:23767304-23767721:-|nuORF	ENST00000559314.5_1_14:23767304-23767721:-|nuORF	ENST00000559314.5_1_14:23767304-23767721:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2721557617188	2	531.272121	1060.52969	0.38412	0.00020407	-0.6313	-0.00033539	-0.24718	-0.00013132	531.2718642018378	67.36	0.67593	67.438	67.094	67.77	0.078041					69	23	4	0	0	0	0.31051	1	16895	16895		16.942	1.0951	1	518220			29508	11882	17079	17080	36336	36336					0.00184505259380785
MIIVSDCALP	10	Unmodified	_MIIVSDCALP_					0	0	0		ENST00000559314.5_1_14:23767304-23767721:-|nuORF	ENST00000559314.5_1_14:23767304-23767721:-|nuORF	ENST00000559314.5_1_14:23767304-23767721:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	531.272121	1060.52969	0.36179	0.00019221	-0.3233	-0.00017176	0.038489	2.0448E-05	531.2718779841762	67.428	0.60367	67.411	67.181	67.785	-0.016296	-0.022755	5.9545E-05	NaN	16.942	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	447130			29509	11882	17079	17080							0.00184505259380785
MIKNDQNMLE	10	Unmodified	_MIKNDQNMLE_					0	0	0		ENST00000501011.6_1_11:82784563-82784683:+|nuORF	ENST00000501011.6_1_11:82784563-82784683:+|nuORF	ENST00000501011.6_1_11:82784563-82784683:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2317810058594	3	412.530141	1234.56859	0.75116	0.00030987	1.9928	0.0008221	2.744	0.001132	412.53071610571044	33.986	0.13548	34.053	33.93	34.066	0.06636					5	4	2	0	0	0	0.32051	1	6617	6617		0.69767	0	1	22820			29510	11267	17080	17081	36337	36337					-0.039308141769424765
MIKRLKCF	8	Unmodified	_MIKRLKCF_					0	0	0			REV__ENSG00000137462|ENST00000642700|TLR2	REV__ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.29736328125	2	519.801183	1037.58781	0.30661	0.00015938	0.50545	0.00026274	0.81206	0.00042211	519.8020091619392	66.435	1.5288	66.422	65.797	67.325	-0.013588					122	54	4	0	0	0	0.38703	1	16661	16661		20.871	10.688	1	923060	+		29511	15860	17081	17082	36338	36338					0.0705223169529745
MIKSGRVMHE	10	Unmodified	_MIKSGRVMHE_					0	0	0			REV__nc|ENSG00000198690|Q9Y2M0-2|FAN1	REV__nc|ENSG00000198690|Q9Y2M0-2|FAN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8404541015625	2	594.304818	1186.59508	0.56712	0.00033704	2.9056	0.0017268	3.4728	0.0020639	594.3062698525825	44.656	0.68325	44.731	44.389	45.072	0.075047					54	24	3	0	0	0	0.31358	1	9834	9834		13.906	2.4113	1	294780	+		29512	18846	17082	17083	36339	36339					0.009249195050870185
MILFHDKTKK	10	Unmodified	_MILFHDKTKK_					0	0	0			REV__nc|ENSG00000168016|O15050|TRANK1	REV__nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8599243164062	2	630.860283	1259.70601	0.54665	0.00034486	-0.40531	-0.00025569	0.14134	8.9165E-05	630.8595479668895	85.924	2.6627	85.924	84.946	87.609	0					263	106	4	0	0	0	0.39745	1	22491	22491		3.9444	0.94915	1	2656100	+		29513	17432	17083	17084	36340	36340					0.08654882484802329
MILHSQDKPF	10	Unmodified	_MILHSQDKPF_					0	0	0		nc|ENSG00000177888|Q5SVQ8-2|ZBTB41;ENST00000467322.1_1_1:197145142-197169603:-|nuORF;ENSG00000177888|ENST00000367405|ZBTB41	nc|ENSG00000177888|Q5SVQ8-2|ZBTB41	nc|ENSG00000177888|Q5SVQ8-2|ZBTB41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5524597167969	3	405.877869	1214.61178	-0.12438	-5.0482E-05	1.7101	0.00069409	1.5857	0.0006436	405.8785318248785	22.18	0.53363	22.08	21.832	22.366	-0.10034					30	13	3	0	0	0	0.38952	1	3076	3076		5.4027	0.35519	1	109990			29514	7022	17084	17085	36341	36341					0.013057436626695562
MILLNGVIT	9	Unmodified	_MILLNGVIT_					0	0	0			REV__ENSG00000141194|ENST00000268912|OR4D1	REV__ENSG00000141194|ENST00000268912|OR4D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.80010986328125	2	487.291171	972.567789	0.51563	0.00025126	-2.2182	-0.0010809	-1.7026	-0.00082965	487.2902637753719	84.324	0.6051	84.324	84.057	84.663	0					35	22	2	0	0	0	0.193	1	22124	22124		24.674	6.5389	1	91595	+		29515	16066	17085	17086	36342	36342					0.08040759236359918
MILLNGVIT	9	Unmodified	_MILLNGVIT_					0	0	0			REV__ENSG00000141194|ENST00000268912|OR4D1	REV__ENSG00000141194|ENST00000268912|OR4D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.8000183105469	2	487.291171	972.567789	0.51433	0.00025063	-3.3952	-0.0016545	-2.8809	-0.0014038	487.28973170816	84.443	0.50352	84.431	84.207	84.71	-0.012871					29	20	2	0	0	0	0.23775	1	22100	22100		18.135	1.1927	1	140970	+		29516	16066	17085	17086	36343	36343					0.08040759236359918
MILLNGVIT	9	Unmodified	_MILLNGVIT_					0	0	0			REV__ENSG00000141194|ENST00000268912|OR4D1	REV__ENSG00000141194|ENST00000268912|OR4D1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	487.291171	972.567789	0.48499	0.00023633	-2.1086	-0.0010275	-1.6236	-0.00079115	487.29056656114454	84.075	0.39182	84.152	83.998	84.39	0.077095	-0.15007	0.00050714	NaN	24.674	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91872	+		29517	16066	17085	17086							0.08040759236359918
MILLNGVIT	9	Unmodified	_MILLNGVIT_					0	0	0			REV__ENSG00000141194|ENST00000268912|OR4D1	REV__ENSG00000141194|ENST00000268912|OR4D1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	487.291171	972.567789	0.51433	0.00025063	-3.3952	-0.0016545	-2.8809	-0.0014038	487.28973170816	84.443	0.50352	84.431	84.207	84.71	-0.012871	0.1282	-0.00074684	NaN	24.674	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140970	+		29518	16066	17085	17086							0.08040759236359918
MILNRAVQL	9	Unmodified	_MILNRAVQL_					0	0	0			REV__nc|ENSG00000101161|O94906-2|PRPF6	REV__nc|ENSG00000101161|O94906-2|PRPF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3004150390625	2	529.312969	1056.61138	0.48026	0.00025421	-2.651	-0.0014032	-2.1707	-0.001149	529.3112134635878	52.208	0.47145	52.208	52.023	52.494	0					32	16	3	0	0	0	0.22061	1	12211	12211		24.021	3.5669	1	418060	+		29519	14249	17086	17087	36344	36344					0.08534368733489828
MINIVEKNRLS	11	Unmodified	_MINIVEKNRLS_					0	0	0			REV__ENSG00000206536|ENST00000383695|OR5K3	REV__ENSG00000206536|ENST00000383695|OR5K3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.57781982421875	3	439.583345	1315.72821	0.0036768	1.6162E-06	1.9893	0.00087444	1.9929	0.00087606	439.5835938500834	49.415	0.95683	49.447	48.904	49.861	0.032043					67	34	3	0	0	0	0.33122	1	11254	11254		7.0371	0	1	420180	+		29520	19022	17087	17088	36345	36345					0.08297062162591828
MINRLKFS	8	Unmodified	_MINRLKFS_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2770690917969	2	504.786587	1007.55862	0.37239	0.00018798	3.3159	0.0016738	3.6883	0.0018618	504.7883753036587	53.984	0.42361	54.041	53.869	54.293	0.056255					28	15	2	0	0	0	0.34046	1	12752	12752		9.3474	1.4373	1	204650	+		29521	13520	17088	17089	36346	36346					0.05514410670673442
MINSARFKATF	11	Unmodified	_MINSARFKATF_					0	0	0			REV__ENST00000483413.1_1_10:119798481-119799811:-|nuORF	REV__ENST00000483413.1_1_10:119798481-119799811:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.22906494140625	3	429.228902	1284.66488	0.0041443	1.7788E-06	-0.18579	-7.9746E-05	-0.18164	-7.7967E-05	429.2286489702012	46.877	1.1226	46.929	46.655	47.777	0.052574					124	41	4	0	0	0	0.35571	2	10622	10622;10655		17.049	0.61529	1	2696100	+		29522	14556	17089	17090	36347;36348	36347					0.03393121445333236
MIPSFFTR	8	Unmodified	_MIPSFFTR_					0	0	0			REV__ENSG00000187105|ENST00000553558|HEATR4	REV__ENSG00000187105|ENST00000553558|HEATR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2792663574219	2	499.760038	997.505523	0.27106	0.00013546	1.2173	0.00060836	1.4884	0.00074382	500.2620490006876	59.466	0.56163	59.561	59.266	59.828	0.095093					26	19	2	0	0	0	0.27124	1	14453	14453		34.102	3.8776	1	309160	+		29523	18490	17090	17091	36349	36349					0.006670328880204579
MIPVPRLKR	9	Unmodified	_MIPVPRLKR_					0	0	0		nc|ENSG00000155592|Q63HK3-2|ZKSCAN2;ENST00000565590.1_1_16:25258001-25268460:-|nuORF;ENST00000569150.1_1_16:25251139-25264321:-|nuORF;ENSG00000155592|ENST00000328086|ZKSCAN2	nc|ENSG00000155592|Q63HK3-2|ZKSCAN2	nc|ENSG00000155592|Q63HK3-2|ZKSCAN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3047485351562	2	555.352428	1108.6903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.3	1	112.3	111.8	112.8	0								0	0	0	0.26704	1	29194	29194		0.6015	0.076735	1				29524	5183	17091	17092	36350	36350					0.14030640758414847
MIPVPRLKR	9	Unmodified	_MIPVPRLKR_					0	0	0		nc|ENSG00000155592|Q63HK3-2|ZKSCAN2;ENST00000565590.1_1_16:25258001-25268460:-|nuORF;ENST00000569150.1_1_16:25251139-25264321:-|nuORF;ENSG00000155592|ENST00000328086|ZKSCAN2	nc|ENSG00000155592|Q63HK3-2|ZKSCAN2	nc|ENSG00000155592|Q63HK3-2|ZKSCAN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7971801757812	2	555.352428	1108.6903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.79	1	112.79	112.29	113.29	0								0	0	0	0.26704	1	29305	29305		0.6015	0	1				29525	5183	17091	17092	36351	36351					0.14030640758414847
MIQANIHPE	9	Unmodified	_MIQANIHPE_					0	0	0			REV__nc|ENSG00000291237|P04179-3|SOD2	REV__nc|ENSG00000291237|P04179-3|SOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.27734375	2	526.763309	1051.51206	0.6166	0.0003248	-0.058063	-3.0586E-05	0.55853	0.00029421	526.7630242301434	66.134	0.8497	66.218	65.86	66.71	0.083832					77	30	3	0	0	0	0.23767	1	16636	16636		18.146	3.3081	1	987610	+		29526	23257	17092	17093	36352	36352					-0.011630739513066146
MIQANIHPE	9	Unmodified	_MIQANIHPE_					0	0	0			REV__nc|ENSG00000291237|P04179-3|SOD2	REV__nc|ENSG00000291237|P04179-3|SOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2771606445312	2	526.763309	1051.51206	0.52567	0.0002769	-0.044402	-2.339E-05	0.48127	0.00025351	526.7630297351224	66.247	0.90105	66.233	65.89	66.791	-0.013588					81	32	4	0	0	0	0.25989	1	16663	16663		14.838	1.3304	1	970170	+		29527	23257	17092	17093	36353	36353					-0.011630739513066146
MIQMDCHGGI	10	Unmodified	_MIQMDCHGGI_					0	0	0		ENST00000519214.5_1_5:150400805-150405029:+|nuORF	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2569580078125	2	552.73538	1103.45621	0.41522	0.0002295	0.17873	9.8788E-05	0.59394	0.00032829	552.735120128353	71.739	0.40464	71.796	71.628	72.033	0.056572					25	14	3	0	0	0	0.31395	1	18235	18235		12.532	0.29089	1	110940			29528	11452	17093	17094	36354	36354					-0.09138366454749303
MIRNMVLF	8	Unmodified	_MIRNMVLF_					0	0	0		ENST00000262039.8_1_18:39570471-39573261:+|nuORF	ENST00000262039.8_1_18:39570471-39573261:+|nuORF	ENST00000262039.8_1_18:39570471-39573261:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.3031005859375	2	512.277541	1022.54053	0.29734	0.00015232	2.3499	0.0012038	2.6472	0.0013561	512.2789338296168	80.798	0.51652	80.798	80.63	81.147	0					39	25	2	0	0	0	0.34046	1	21066	21066		14.582	1.0738	1	148500			29529	8981	17094	17095	36355	36355					0.03015952424311763
MISANRGQLL	10	Unmodified	_MISANRGQLL_					0	0	0			REV__ENST00000360862.9_2_16:3534964-3535998:+|nuORF	REV__ENST00000360862.9_2_16:3534964-3535998:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.80615234375	2	551.805508	1101.59646	0.56659	0.00031265	0.53682	0.00029622	1.1034	0.00060886	551.8056748285894	64.383	1.182	64.476	64.012	65.194	0.09288					93	43	3	0	0	0	0.29092	1	15943	15943		21.537	21.537	1	1015500	+		29530	20268	17095	17096	36356	36356					0.04972876865485887
MISNNGLVTT	10	Unmodified	_MISNNGLVTT_					0	0	0		ENSG00000176200|ENST00000313253|OR4D11	ENSG00000176200|ENST00000313253|OR4D11	ENSG00000176200|ENST00000313253|OR4D11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2686767578125	2	525.268424	1048.5223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.774	1	99.767	99.267	100.27	-0.006897								0	0	0	0.3726	1	26712	26712		5.2969	0.39987	1				29531	6908	17096	17097	36357	36357					-2.5110166916419985E-05
MITNPPLNL	9	Unmodified	_MITNPPLNL_					0	0	0			REV__nc|ENSG00000135930|O60573-2|EIF4E2	REV__nc|ENSG00000135930|O60573-2|EIF4E2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.3100280761719	2	506.778428	1011.5423	0.13639	6.912E-05	1.2769	0.0006471	1.4133	0.00071622	506.7790131070421	94.817	0.13804	94.817	94.799	94.937	0					17	11	2	0	0	0	0.25066	1	25328	25328		7.2892	0	1	50491	+		29532	15771	17097	17098	36358	36358					0.03699284713900397
MITRKVTIA	9	Unmodified	_MITRKVTIA_					0	0	0		ENSG00000128294|ENST00000338754|TPST2	ENSG00000128294|ENST00000338754|TPST2	ENSG00000128294|ENST00000338754|TPST2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.30322265625	2	516.815344	1031.61614	0.12612	6.5179E-05	-0.71796	-0.00037105	-0.59185	-0.00030587	516.8150017777801	27.076	0.66085	27.054	26.867	27.528	-0.021412					35	22	2	0	0	0	0.25706	1	4525	4525		6.7232	1.9672	1	120180			29533	3359	17098	17099	36359	36359					0.1015925287626942
MITRKVTIA	9	Unmodified	_MITRKVTIA_					0	0	0		ENSG00000128294|ENST00000338754|TPST2	ENSG00000128294|ENST00000338754|TPST2	ENSG00000128294|ENST00000338754|TPST2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	516.815344	1031.61614	0.25104	0.00012974	-0.8375	-0.00043283	-0.58646	-0.00030309	516.8148794986154	27.088	0.60784	27.088	26.953	27.561	0	0.016509	-8.0746E-06	NaN	6.7232	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102060			29534	3359	17098	17099							0.1015925287626942
MITVVDPLGG	10	Unmodified	_MITVVDPLGG_					0	0	0			REV__ENSG00000036448|ENST00000262113|MYOM2	REV__ENSG00000036448|ENST00000262113|MYOM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.290771484375	2	501.270435	1000.52632	0.69068	0.00034622	0.27532	0.00013801	0.966	0.00048422	501.27026695826305	77.703	2.0561	77.758	77.378	79.434	0.05542					122	81	3	0	0	0	0.3144	1	20479	20479		13.042	13.042	1	976010	+		29535	13508	17099	17100	36360	36360					0.02607578477034167
MITVVDPLGG	10	Unmodified	_MITVVDPLGG_					0	0	0			REV__ENSG00000036448|ENST00000262113|MYOM2	REV__ENSG00000036448|ENST00000262113|MYOM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2590026855469	2	501.270435	1000.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.051	1	81.025	80.525	81.525	-0.026825								0	0	0	0.3629	1	21078	21078		9.3831	0.035688	1		+		29536	13508	17099	17100	36361	36361					0.02607578477034167
MIVETIFWGE	10	Unmodified	_MIVETIFWGE_					0	0	0			REV__ENST00000510054.1_1_4:185033764-185038938:-|nuORF	REV__ENST00000510054.1_1_4:185033764-185038938:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.5655517578125	3	408.870492	1223.58965	0.33674	0.00013768	-1.292	-0.00052825	-0.95523	-0.00039056	408.86984399668927	54.877	0.39167	54.877	54.552	54.943	0					19	14	2	0	0	0	0.31942	1	12973	12973		6.1918	1.663	1	233600	+		29537	21797	17100	17101	36362	36362					-0.013204808057480477
MIVETIFWGE	10	Unmodified	_MIVETIFWGE_					0	0	0			REV__ENST00000510054.1_1_4:185033764-185038938:-|nuORF	REV__ENST00000510054.1_1_4:185033764-185038938:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	408.870492	1223.58965	0.42683	0.00017452	-3.1658	-0.0012944	-2.7389	-0.0011199	408.8688289883078	54.896	0.12851	54.88	54.796	54.924	-0.015923	0.0016479	-0.0021736	NaN	6.1918	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125680	+		29538	21797	17100	17101							-0.013204808057480477
MIYDSLDYAK	10	Oxidation (M)	_M(Oxidation (M))IYDSLDYAK_		M(1)IYDSLDYAK		M(46)IYDSLDYAK	0	0	1		ENST00000605314.1_1_17:8199948-8200373:-|nuORF;ENST00000479895.1_1_16:56940598-56940763:+|nuORF;ENST00000466129.5_1_10:79793659-79795541:+|nuORF;ENSG00000138326|ENST00000372360|RPS24;ENST00000485708.6_1_10:79793659-79797725:+|nuORF;ENST00000478655.5_1_10:79793659-79797065:+|nuORF;nc|ENSG00000138326|P62847-3|RPS24;nc|ENSG00000138326|P62847|RPS24;ENST00000465692.1_1_10:79795142-79808843:+|nuORF;nc|ENSG00000138326|P62847-4|RPS24	ENST00000605314.1_1_17:8199948-8200373:-|nuORF	ENST00000605314.1_1_17:8199948-8200373:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	617.8074951171875	2	617.786647	1233.55874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.51	1	45.51	45.01	46.01	0								0	0	0	0.15242	1	10178	10178		45.74	25.286	1				29539	4137	17101	17102	36363	36363		531			-0.048696789106770666
MIYDSLDYAK	10	Oxidation (M)	_M(Oxidation (M))IYDSLDYAK_		M(1)IYDSLDYAK		M(62)IYDSLDYAK	0	0	1		ENST00000605314.1_1_17:8199948-8200373:-|nuORF;ENST00000479895.1_1_16:56940598-56940763:+|nuORF;ENST00000466129.5_1_10:79793659-79795541:+|nuORF;ENSG00000138326|ENST00000372360|RPS24;ENST00000485708.6_1_10:79793659-79797725:+|nuORF;ENST00000478655.5_1_10:79793659-79797065:+|nuORF;nc|ENSG00000138326|P62847-3|RPS24;nc|ENSG00000138326|P62847|RPS24;ENST00000465692.1_1_10:79795142-79808843:+|nuORF;nc|ENSG00000138326|P62847-4|RPS24	ENST00000605314.1_1_17:8199948-8200373:-|nuORF	ENST00000605314.1_1_17:8199948-8200373:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.319091796875	2	617.786647	1233.55874	0.31013	0.00019159	0.11375	7.0274E-05	0.42388	0.00026187	617.7864360845076	45.347	0.44785	45.412	45.199	45.647	0.065048					31	16	3	0	0	0	0.15532	1	10119	10119		61.602	38.866	1	341550			29540	4137	17101	17102	36364	36364		531			-0.048696789106770666
MIYDSLDYAK	10	Oxidation (M)	_M(Oxidation (M))IYDSLDYAK_					0	0	1		ENST00000605314.1_1_17:8199948-8200373:-|nuORF;ENST00000479895.1_1_16:56940598-56940763:+|nuORF;ENST00000466129.5_1_10:79793659-79795541:+|nuORF;ENSG00000138326|ENST00000372360|RPS24;ENST00000485708.6_1_10:79793659-79797725:+|nuORF;ENST00000478655.5_1_10:79793659-79797065:+|nuORF;nc|ENSG00000138326|P62847-3|RPS24;nc|ENSG00000138326|P62847|RPS24;ENST00000465692.1_1_10:79795142-79808843:+|nuORF;nc|ENSG00000138326|P62847-4|RPS24	ENST00000605314.1_1_17:8199948-8200373:-|nuORF	ENST00000605314.1_1_17:8199948-8200373:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	617.786647	1233.55874	0.36528	0.00022567	-0.074234	-4.5861E-05	0.29105	0.00017981	617.7865255710047	45.03	0.40925	45.03	44.829	45.238	0	-0.23672	-0.00015162	NaN	65.474	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235540			29541	4137	17101	17102				531			-0.048696789106770666
MIYWFLMF	8	Unmodified	_MIYWFLMF_					0	0	0			REV__ENSG00000171495|ENST00000399564|MROH2B	REV__ENSG00000171495|ENST00000399564|MROH2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7923583984375	2	575.776842	1149.53913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.868	1	75.837	75.337	76.337	-0.031487								0	0	0	0.34461	1	19499	19499		17.087	4.0441	1		+		29542	17643	17102	17103	36365	36365					-0.029656816644319406
MKDYEYYSL	9	Unmodified	_MKDYEYYSL_					0	0	0			REV__ENSG00000102010|ENST00000348343|BMX	REV__ENSG00000102010|ENST00000348343|BMX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5149230957031	3	404.514485	1210.52163	-0.34634	-0.0001401	0.83682	0.00033851	0.49048	0.00019841	404.51499982149477	16.634	0.80195	16.52	16.166	16.968	-0.11434					73	28	4	0	0	0	0.25989	1	1397	1397		10.151	1.1743	1	537500	+		29543	14300	17103	17104	36366	36366					-0.07521350456408982
MKDYEYYSL	9	Unmodified	_MKDYEYYSL_					0	0	0			REV__ENSG00000102010|ENST00000348343|BMX	REV__ENSG00000102010|ENST00000348343|BMX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.51495361328125	3	404.514485	1210.52163	-0.16014	-6.4779E-05	0.65877	0.00026648	0.49863	0.0002017	404.51495613452454	16.418	0.63513	16.355	16.094	16.729	-0.062534					87	21	7	0	0	0	0.25989	1	1354	1354		10.151	1.1743	1	548110	+		29544	14300	17103	17104	36367	36367					-0.07521350456408982
MKEQEWLKE	9	Unmodified	_MKEQEWLKE_					0	0	0			REV__nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2	REV__nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.49761962890625	3	407.537513	1219.59071	-0.024109	-9.8252E-06	0.5973	0.00024342	0.57319	0.0002336	407.5377009044428	57.583	0.94322	57.583	57.299	58.243	0					70	33	4	0	0	0	0.25431	1	13964	13964		9.544	1.5986	1	1408000	+		29545	17833	17104	17105	36368	36368					-0.010302664368737169
MKEQEWLKE	9	Unmodified	_MKEQEWLKE_					0	0	0			REV__nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2	REV__nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5378112792969	3	407.537513	1219.59071	-0.11337	-4.6201E-05	0.70606	0.00028775	0.5927	0.00024155	407.53771970158436	57.722	0.74944	57.705	57.337	58.087	-0.0172					48	27	2	0	0	0	0.30266	1	13932	13932		8.4443	0.28878	1	911780	+		29546	17833	17104	17105	36369	36369					-0.010302664368737169
MKETLRIRRL	10	Unmodified	_MKETLRIRRL_					0	0	0		nc|ENSG00000157326|Q9BTZ2-6|DHRS4;ENST00000559270.5_2_14:24507775-24520174:+|nuORF;nc|ENSG00000157326|Q9BTZ2-3|DHRS4;nc|ENSG00000157326|Q9BTZ2-2|DHRS4;nc|ENSG00000157326|Q9BTZ2-5|DHRS4;nc|ENSG00000157326|Q9BTZ2-8|DHRS4;nc|ENSG00000157326|Q9BTZ2-4|DHRS4;ENSG00000157326|ENST00000313250|DHRS4;nc|ENSG00000285467|P0CG22|DHRS4L1	nc|ENSG00000157326|Q9BTZ2-6|DHRS4	nc|ENSG00000157326|Q9BTZ2-6|DHRS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.5752258300781	3	439.271213	1314.79181	0.46369	0.00020369	1.1756	0.00051639	1.6392	0.00072007	439.27173132092224	33.864	0.88431	33.93	33.432	34.317	0.06636					44	31	2	0	0	0	0.3213	1	6720	6720		1.9064	0.57673	1	131380			29547	5295	17105	17106	36370	36370					0.14700467390321137
MKFAVLIGL	9	Unmodified	_MKFAVLIGL_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3040466308594	2	496.304081	990.59361	0.46381	0.00023019	-0.023995	-1.1909E-05	0.43982	0.00021828	496.3039549797635	72.194	1.7048	72.167	71.506	73.211	-0.027275					173	60	3	0	0	0	0.32733	1	18529	18529		4.756	1.8668	1	1114600			29548	6673	17106	17107	36371	36371					0.09793653478641318
MKFRFRRQ	8	Unmodified	_MKFRFRRQ_					0	0	0		LLGL1|p.L685Vfs*10|1|0.32|ENSG00000131899|chr17:18238211-18238212|-/A|frameshift_variant;ENSG00000131899|ENST00000316843|LLGL1	LLGL1|p.L685Vfs*10|1|0.32|ENSG00000131899|chr17:18238211-18238212|-/A|frameshift_variant	LLGL1|p.L685Vfs*10|1|0.32|ENSG00000131899|chr17:18238211-18238212|-/A|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8294677734375	2	584.829652	1167.64475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.616	1	12.548	12.048	13.048	-0.067496								0	0	0	0.38004	1	179	179		0.69038	0.16561	1				29549	3597	17107	17108	36372	36372					0.06763415296063613
MKGGGGGG	8	Unmodified	_MKGGGGGG_					0	0	0			REV__ENST00000428095.1_1_3:196098887-196159300:-|nuORF	REV__ENST00000428095.1_1_3:196098887-196159300:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.868896484375	1	620.282071	619.274795	0.15108	9.3713E-05	1.9339	0.0011995	2.085	0.0012933	620.282736964981	93.61	0.029518	93.61	93.597	93.626	0					4	2	2	0	0	0	0.34445	1	24941	24941		0	0	1	24896	+		29550	19826	17108	17109	36373	36373					-0.05007175373964401
MKGGGGGG	8	Unmodified	_MKGGGGGG_					0	0	0			REV__ENST00000428095.1_1_3:196098887-196159300:-|nuORF	REV__ENST00000428095.1_1_3:196098887-196159300:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8675537109375	1	620.282071	619.274795	0.26593	0.00016495	3.7235	0.0023096	3.9894	0.0024745	620.2842169764937	91.388	0.26736	91.388	91.267	91.534	0					26	20	2	0	0	0	0.34445	1	24278	24278		0	0	1	68598	+		29551	19826	17108	17109	36374	36374					-0.05007175373964401
MKGGGGGG	8	Unmodified	_MKGGGGGG_					0	0	0			REV__ENST00000428095.1_1_3:196098887-196159300:-|nuORF	REV__ENST00000428095.1_1_3:196098887-196159300:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		1	620.282071	619.274795	0.12286	7.621E-05	4.5458	0.0028197	4.6687	0.0028959	620.2847880987185	91.22	0.26543	91.31	91.21	91.476	0.090675	-0.038635	0.00033964	NaN	0	21	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98903	+		29552	19826	17108	17109							-0.05007175373964401
MKHCLAPLF	9	Unmodified	_MKHCLAPLF_					0	0	0			REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2988891601562	2	530.277541	1058.54053	0.53739	0.00028497	-0.015764	-8.3592E-06	0.52163	0.00027661	531.2793639746242	90.544	0.64925	90.544	90.196	90.845	0					93	50	3	0	0	0	0.2451	1	24009	24009		15.847	2.3393	1	142340	+		29553	21052	17109	17110	36375	36375					0.013599524243090855
MKHRRNWRAVK	11	Unmodified	_MKHRRNWRAVK_					0	0	0			REV__ENSG00000108950|ENST00000592554|FAM20A	REV__ENSG00000108950|ENST00000592554|FAM20A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2393493652344	3	494.617606	1480.83099	0.25639	0.00012682	-1.4038	-0.00069433	-1.1474	-0.00056752	494.9513410752336	19.561	0.30978	19.561	19.375	19.685	0					24	10	3	0	0	0	0.33334	1	2275	2275		1.2148	0.76031	1	38465	+		29554	14618	17110	17111	36376	36376					0.10980612464550177
MKHRRNWRAVK	11	Unmodified	_MKHRRNWRAVK_					0	0	0			REV__ENSG00000108950|ENST00000592554|FAM20A	REV__ENSG00000108950|ENST00000592554|FAM20A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2396545410156	3	494.617606	1480.83099	0.41419	0.00020487	-1.1046	-0.00054636	-0.69041	-0.00034149	494.6170055935402	19.817	0.32451	19.701	19.488	19.812	-0.11592					16	10	2	0	0	0	0.3333	1	2294	2294		1.3296	0	1	37183	+		29555	14618	17110	17111	36377	36377					0.10980612464550177
MKIGLPLSL	9	Unmodified	_MKIGLPLSL_					0	0	0		ENST00000259030.2_1_3:187089157-187089205:+|nuORF	ENST00000259030.2_1_3:187089157-187089205:+|nuORF	ENST00000259030.2_1_3:187089157-187089205:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2922668457031	2	486.301539	970.588524	0.36755	0.00017874	-0.022613	-1.0997E-05	0.34494	0.00016775	486.3015517155197	43.789	4.3844	43.789	43.602	47.987	0					249	159	2	0	0	0	0.24311	1	9657	9657		16.942	16.942	1	1203800			29556	8951	17111	17112	36378	36378					0.10205349616023796
MKKAAAKK	8	Unmodified	_MKKAAAKK_					0	0	0			REV__nc|ENSG00000149503|Q9NQS7-2|INCENP	REV__nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2799987792969	2	438.278398	874.542243	-0.044108	-1.9332E-05	2.4539	0.0010755	2.4098	0.0010562	438.279235808513	80.418	0.92703	80.483	79.979	80.906	0.065094					74	35	3	0	0	0	0.34437	1	20803	20803		0.69038	0	1	472250	+		29557	16470	17112	17113	36379	36379					0.09995329504579331
MKKAAAKK	8	Unmodified	_MKKAAAKK_					0	0	0			REV__nc|ENSG00000149503|Q9NQS7-2|INCENP	REV__nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.2800598144531	2	438.278398	874.542243	0.063189	2.7694E-05	2.1987	0.00096366	2.2619	0.00099135	438.2790879002276	80.476	0.96954	80.45	79.949	80.919	-0.026817					73	35	3	0	0	0	0.34437	1	20818	20818		0.69038	0.69038	1	504080	+		29558	16470	17112	17113	36380	36380					0.09995329504579331
MKKHLLYVD	9	Unmodified	_MKKHLLYVD_					0	0	0			REV__AHCYL2|p.P566H|1|0.19|ENSG00000158467|chr7:129425130-129425130|C/A|missense_variant	REV__AHCYL2|p.P566H|1|0.19|ENSG00000158467|chr7:129425130-129425130|C/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.818359375	2	573.820627	1145.6267	-0.19945	-0.00011445	-3.0686	-0.0017609	-3.2681	-0.0018753	573.8187195200134	12.152	0.11939	12.084	11.999	12.118	-0.06806					12	6	2	0	0	0	0.34681	1	37	37		1.8442	1.2427	1	32180	+		29559	13092	17113	17114	36381	36381					0.05971235530682861
MKKLHINTKL	10	Unmodified	_MKKLHINTKL_					0	0	0			REV__ENSG00000204449|ENST00000448984|TRIM49C	REV__ENSG00000204449|ENST00000448984|TRIM49C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9083251953125	3	409.253159	1224.73765	-0.13256	-5.4252E-05	3.0295	0.0012398	2.8969	0.0011856	409.2542566018214	16.584	0.36523	16.47	16.33	16.695	-0.11434					21	12	2	0	0	0	0.32143	1	1425	1425		1.5923	0.81575	1	35692	+		29560	17490	17114	17115	36382	36382					0.13426875238769753
MKKLLGPK	8	Unmodified	_MKKLLGPK_					0	0	0		ENST00000466600.1_1_1:186823486-186908166:+|nuORF;ENSG00000116711|ENST00000367466|PLA2G4A	ENST00000466600.1_1_1:186823486-186908166:+|nuORF	ENST00000466600.1_1_1:186823486-186908166:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.27642822265625	2	457.796423	913.578294	-0.64828	-0.00029678	-0.62224	-0.00028486	-1.2705	-0.00058164	457.79616467393043	35.22	0.46556	35.22	35	35.466	0					21	16	2	0	0	0	0.34247	1	7024	7024		4.756	2.4533	1	64683			29561	2744	17115	17116	36383	36383					0.1180478668145497
MKKMRTSGQ	9	Unmodified	_MKKMRTSGQ_					0	0	0		ENST00000491511.6_1_3:101500962-101501088:+|nuORF	ENST00000491511.6_1_3:101500962-101501088:+|nuORF	ENST00000491511.6_1_3:101500962-101501088:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2952270507812	2	533.778436	1065.54232	0.59678	0.00031855	2.6287	0.0014032	3.2255	0.0017217	533.7797156041033	36.157	0.34507	36.157	35.962	36.307	0					19	12	2	0	0	0	0.24636	1	7311	7311		16.149	2.2431	1	121180			29562	11182	17116	17117	36384	36384					0.012169614422646191
MKKMRTSGQ	9	Unmodified	_MKKMRTSGQ_					0	0	0		ENST00000491511.6_1_3:101500962-101501088:+|nuORF	ENST00000491511.6_1_3:101500962-101501088:+|nuORF	ENST00000491511.6_1_3:101500962-101501088:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.295166015625	2	533.778436	1065.54232	0.48289	0.00025775	3.3404	0.001783	3.8233	0.0020408	533.779970426613	36.115	0.30555	36.197	35.928	36.233	0.082355					15	10	2	0	0	0	0.2524	1	7264	7264		11.495	4.2055	1	197130			29563	11182	17116	17117	36385	36385					0.012169614422646191
MKKSCMQQF	9	Unmodified	_MKKSCMQQF_					0	0	0		ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENST00000406274.1_1_6:13521672-13522002:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7612915039062	2	565.761397	1129.50824	0.323	0.00018274	-0.6349	-0.0003592	-0.3119	-0.00017646	565.7611337286069	68.605	1.2616	68.605	68.329	69.59	0					97	45	3	0	0	0	0.07432	1	17334	17334		43.858	5.8843	1	1055800			29564	10221	17117	17118	36386	36386					-0.051332030409867
MKKSCMQQF	9	Unmodified	_MKKSCMQQF_					0	0	0		ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENST00000406274.1_1_6:13521672-13522002:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.7611694335938	2	565.761397	1129.50824	0.36386	0.00020586	-0.57483	-0.00032522	-0.21098	-0.00011936	565.7611368554126	68.531	1.1042	68.603	68.33	69.434	0.071938					99	40	4	0	0	0	0.027237	1	17261	17261		61.357	6.5839	1	1539200			29565	10221	17117	17118	36387	36387					-0.051332030409867
MKKSCMQQF	9	Unmodified	_MKKSCMQQF_					0	0	0		ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENST00000406274.1_1_6:13521672-13522002:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7615966796875	2	565.761397	1129.50824	0.31314	0.00017716	-0.33853	-0.00019153	-0.025386	-1.4363E-05	565.7611799385262	68.652	1.0105	68.632	68.37	69.381	-0.01915					87	35	4	0	0	0	0.051692	2	17283	17283;17338		52.268	0	1	1503800			29566	10221	17117	17118	36388;36389	36388					-0.051332030409867
MKKSCMQQF	9	Unmodified	_MKKSCMQQF_					0	0	0		ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENST00000406274.1_1_6:13521672-13522002:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	565.761397	1129.50824	0.323	0.00018274	-0.6349	-0.0003592	-0.3119	-0.00017646	565.7611337286069	68.605	1.2616	68.605	68.329	69.59	0	-0.0087378	-0.00013057	NaN	61.357	97	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1055800			29567	10221	17117	17118							-0.051332030409867
MKLRHVLVD	9	Unmodified	_MKLRHVLVD_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.840087890625	2	555.826243	1109.63793	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.492	1	33.492	32.992	33.992	0								0	0	0	0.24715	1	6502	6502		7.2892	1.0834	1		+		29568	15386	17118	17119	36390	36390					0.08750057624843066
MKLRWFLKRWR	11	Unmodified	_MKLRWFLKRWR_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-4|MTCL2	ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-4|MTCL2	ENSG00000149639|ENST00000237536|SOGA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7916259765625	3	540.653769	1618.93948	0.49099	0.00026546	-0.91015	-0.00049207	-0.41915	-0.00022662	540.6532690592948	57.272	0.14332	57.357	57.294	57.437	0.085621					5	4	2	0	0	0	0.33352	1	13823	13823		0	0	1	93936			29569	4886;12755	17119	17120	36391	36391					0.15476403714956177
MKLRWFLKRWR	11	Unmodified	_MKLRWFLKRWR_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;nc|ENSG00000149639|O94964-4|MTCL2	ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-4|MTCL2	ENSG00000149639|ENST00000237536|SOGA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.9852905273438	3	540.653769	1618.93948	0.51833	0.00028024	0.46738	0.00025269	0.98572	0.00053293	540.6541643605503	98.276	0.11142	98.269	98.242	98.354	-0.0068283					16	12	2	0	0	0	0.33347	1	26351	26351		0.45452	0.37117	1	487990			29570	4886;12755	17119	17120	36392	36392					0.15476403714956177
MKLSVSNSFA	10	Unmodified	_MKLSVSNSFA_					0	0	0			REV__nc|nan|Q9H6X5-2|C19orf44	REV__nc|nan|Q9H6X5-2|C19orf44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8078002929688	2	542.278792	1082.54303	0.38704	0.00020988	-3.9031	-0.0021166	-3.5161	-0.0019067	542.2768900675941	76.4	0.33365	76.4	76.283	76.617	0					17	11	2	0	0	0	0.31323	1	19679	19679		15.248	4.4246	1	122480	+		29571	14435	17120	17121	36393	36393					0.005060793629809268
MKLSYQLRLWC	11	Unmodified	_MKLSYQLRLWC_					0	0	0		ENST00000569549.5_1_16:74943656-74957850:-|nuORF	ENST00000569549.5_1_16:74943656-74957850:-|nuORF	ENST00000569549.5_1_16:74943656-74957850:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.283447265625	3	480.921192	1439.74175	0.39955	0.00019215	-0.88587	-0.00042604	-0.48633	-0.00023388	480.9207861915901	90.515	0.19163	90.516	90.456	90.647	0.0003891					16	12	2	0	0	0	0.33334	1	24007	24007		1.2148	0.20126	1	161830			29572	12010	17121	17122	36394	36394					0.03946596670152758
MKLWPLVI	8	Unmodified	_MKLWPLVI_					0	0	0		ENST00000475470.1_1_3:9882101-9883869:-|nuORF	ENST00000475470.1_1_3:9882101-9883869:-|nuORF	ENST00000475470.1_1_3:9882101-9883869:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.3138732910156	2	500.306624	998.598695	0.38353	0.00019188	-3.6588	-0.0018305	-3.2753	-0.0016386	500.30481883643114	70.676	0.36339	70.676	70.46	70.823	0					14	12	2	0	0	0	0.34247	1	17867	17867		8.5933	1.304	1	103690			29573	10933	17122	17123	36395	36395					0.09933957341240784
MKMKMQWML	9	Unmodified	_MKMKMQWML_					0	0	0		ENST00000540319.5_1_12:67692794-67696138:+|nuORF	ENST00000540319.5_1_12:67692794-67696138:+|nuORF	ENST00000540319.5_1_12:67692794-67696138:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5316162109375	3	409.535404	1225.58438	-0.14475	-5.9279E-05	2.5353	0.0010383	2.3905	0.000979	409.53671204339804	29.493	0.89836	29.507	29.248	30.146	0.013475					42	30	2	0	0	0	0.23783	1	5218	5218		12.241	0.72278	1	149960			29574	11718	17123	17124	36396	36396					-0.019385224652069155
MKNFNNFL	8	Unmodified	_MKNFNNFL_					0	0	0		ENST00000369975.5_1_6:76568666-76568705:+|nuORF	ENST00000369975.5_1_6:76568666-76568705:+|nuORF	ENST00000369975.5_1_6:76568666-76568705:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2548217773438	2	514.25512	1026.49569	0.16822	8.6509E-05	0.34414	0.00017698	0.51236	0.00026349	514.2553658245954	82.052	1.7411	82.121	81.874	83.615	0.068993					245	69	7	0	0	0	0.42758	1	21359	21359		13.508	4.9146	1	9050000			29575	9786	17124	17125	36397	36397					-0.016501551173632834
MKNFNNFL	8	Unmodified	_MKNFNNFL_					0	0	0		ENST00000369975.5_1_6:76568666-76568705:+|nuORF	ENST00000369975.5_1_6:76568666-76568705:+|nuORF	ENST00000369975.5_1_6:76568666-76568705:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2553100585938	2	514.25512	1026.49569	0.28827	0.00014825	0.29973	0.00015414	0.58801	0.00030239	514.2553659412491	82.223	1.5699	82.199	81.878	83.448	-0.02404					222	61	7	0	0	0	0.4419	1	21398	21398		8.5933	0	1	10619000			29576	9786	17124	17125	36398	36398					-0.016501551173632834
MKPLLYIP	8	Unmodified	_MKPLLYIP_					0	0	0		nc|ENSG00000153066|Q6PKC3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3-3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7909851074219	2	487.790807	973.56706	0.41302	0.00020147	0.21511	0.00010493	0.62812	0.00030639	487.7906948525249	72.031	1.8157	72.004	71.368	73.183	-0.027275					152	64	3	0	0	0	0.45015	1	18509	18509		5.7604	0.46354	1	1149600			29577	5057	17125	17126	36399	36399					0.07921964587285402
MKPVGKEETRA	11	Unmodified	_MKPVGKEETRA_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|58|2|sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|58|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.3341064453125	2	623.33463	1244.65471	0.10231	6.3773E-05	-0.53967	-0.0003364	-0.43736	-0.00027262	623.3342207905044	58.224	0.33516	58.309	58.189	58.524	0.085617					18	11	2	0	0	0	0.46819	1	14143	14143		2.2828	0.19677	1	248420	+		29578	22720	17126	17127	36400	36400					0.04216513720120929
MKPVGKEETRA	11	Unmodified	_MKPVGKEETRA_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|58|2|sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|58|2|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	623.33463	1244.65471	0.43958	0.000274	-0.80166	-0.0004997	-0.36208	-0.0002257	623.33403936837	58.405	0.37636	58.405	58.187	58.564	0	0.03053	-0.00012745	NaN	2.2828	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198200	+		29579	22720	17126	17127							0.04216513720120929
MKPVGKEETRA	11	Unmodified	_MKPVGKEETRA_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|58|2|sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|58|2|sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	623.33463	1244.65471	0.10231	6.3773E-05	-0.53967	-0.0003364	-0.43736	-0.00027262	623.3342207905044	58.224	0.33516	58.309	58.189	58.524	0.085617	-0.065442	0.00019916	NaN	2.2828	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248420	+		29580	22720	17126	17127							0.04216513720120929
MKPVGKEETRA	11	Unmodified	_MKPVGKEETRA_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|58|2|sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|58|2|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	623.33463	1244.65471	0.62246	0.000388	-0.94329	-0.00058798	-0.32083	-0.00019998	623.3339290174894	58.424	0.35273	58.41	58.278	58.631	-0.014267	0.034912	-0.00030402	NaN	2.2828	19	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305000	+		29581	22720	17126	17127							0.04216513720120929
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8695678710938	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.91	1	115.91	115.41	116.41	0								0	0	0	0.38166	1	30025	30025		1.4819	0	1		+		29582	21654	17127	17128	36401	36401					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8692626953125	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.4	1	117.4	116.9	117.9	0								0	0	0	0.38166	1	30363	30363		1.4819	0	1		+		29583	21654	17127	17128	36402	36402					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8694458007812	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.7	1	117.7	117.2	118.2	0								0	0	0	0.38166	1	30428	30428		1.4819	0	1		+		29584	21654	17127	17128	36403	36403					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.86865234375	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.01	1	118.01	117.51	118.51	0								0	0	0	0.38166	1	30499	30499		1.4819	0	1		+		29585	21654	17127	17128	36404	36404					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8693237304688	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.98	1	118.98	118.48	119.48	0								0	0	0	0.38166	1	30719	30719		1.4819	0	1		+		29586	21654	17127	17128	36405	36405					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.869140625	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.28	1	119.28	118.78	119.78	0								0	0	0	0.38166	1	30783	30783		1.4819	0	1		+		29587	21654	17127	17128	36406	36406					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8685913085938	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.49	1	119.49	118.99	119.99	0								0	0	0	0.38166	1	30831	30831		1.4819	0	1		+		29588	21654	17127	17128	36407	36407					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8685913085938	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.44	1	112.43	111.93	112.93	-0.015625								0	0	0	0.38166	1	29248	29248		1.4819	0	1		+		29589	21654	17127	17128	36408	36408					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8678588867188	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.77	1	116.75	116.25	117.25	-0.022781								0	0	0	0.38166	1	30240	30240		1.4819	0	1		+		29590	21654	17127	17128	36409	36409					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8676147460938	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.92	1	116.9	116.4	117.4	-0.022781								0	0	0	0.38166	1	30278	30278		1.4819	0	1		+		29591	21654	17127	17128	36410	36410					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8684692382812	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.23	1	117.21	116.71	117.71	-0.024147								0	0	0	0.38166	1	30352	30352		1.4819	0	1		+		29592	21654	17127	17128	36411	36411					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.86865234375	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.88	1	117.86	117.36	118.36	-0.024147								0	0	0	0.38166	1	30497	30497		1.4819	0	1		+		29593	21654	17127	17128	36412	36412					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8690795898438	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.52	1	118.5	118	119	-0.024147								0	0	0	0.38166	1	30633	30633		1.4819	0	1		+		29594	21654	17127	17128	36413	36413					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8692626953125	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.5	1	119.48	118.98	119.98	-0.024361								0	0	0	0.38166	1	30850	30850		1.4819	0	1		+		29595	21654	17127	17128	36414	36414					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.86865234375	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.79	1	119.76	119.26	120.26	-0.024361								0	0	0	0.38166	1	30911	30911		1.4819	0	1		+		29596	21654	17127	17128	36415	36415					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.868896484375	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.12	1	106.12	105.62	106.62	0.0031738								0	0	0	0.37739	1	28106	28106		3.2813	0	1		+		29597	21654	17127	17128	36416	36416					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8690795898438	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.82	1	116.84	116.34	117.34	0.020988								0	0	0	0.38166	1	30299	30299		1.4819	0	1		+		29598	21654	17127	17128	36417	36417					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8688354492188	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.72	1	118.75	118.25	119.25	0.026253								0	0	0	0.38166	1	30732	30732		1.4819	0	1		+		29599	21654	17127	17128	36418	36418					0.11231169001871422
MKQHIKDLLL	10	Unmodified	_MKQHIKDLLL_					0	0	0			REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	REV__ENST00000494677.5_1_3:157177462-157177639:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8688354492188	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.81	1	119.84	119.34	120.34	0.027756								0	0	0	0.38166	1	30974	30974		1.4819	0	1		+		29600	21654	17127	17128	36419	36419					0.11231169001871422
MKRCLVRM	8	Unmodified	_MKRCLVRM_					0	0	0		ENST00000563984.1_1_16:46717374-46723045:-|nuORF	ENST00000563984.1_1_16:46717374-46723045:-|nuORF	ENST00000563984.1_1_16:46717374-46723045:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2317504882812	2	518.782467	1035.55038	0.013835	7.1775E-06	-4.081	-0.0021172	-4.0672	-0.00211	518.7800420198218	28.238	0.29601	28.238	27.981	28.277	0					13	9	2	0	0	0	0.34353	1	4872	4872		4.756	0.42677	1	118960			29601	11939	17128	17129	36420	36420					0.034028171580303024
MKRKQIEHLIQ	11	Unmodified	_MKRKQIEHLIQ_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;nc|ENSG00000131018|Q8NF91-5|SYNE1;nc|ENSG00000131018|Q8NF91-6|SYNE1;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.27862548828125	3	475.278256	1422.81294	0.30941	0.00014706	0.1097	5.2137E-05	0.41911	0.00019919	475.2782623211067	55.113	1.3818	55.113	54.526	55.907	0					156	50	4	0	0	0	0.45422	1	13219	13219		4.1166	1.2733	1	2747500			29602	3536	17129	17130	36421	36421					0.1184443269919484
MKRLSTFLRS	10	Unmodified	_MKRLSTFLRS_					0	0	0		ENST00000304031.7_1_2:20838259-20838331:-|nuORF	ENST00000304031.7_1_2:20838259-20838331:-|nuORF	ENST00000304031.7_1_2:20838259-20838331:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.357666015625	2	619.855532	1237.69651	-0.0074998	-4.6488E-06	0.59288	0.0003675	0.58538	0.00036285	619.8556097528466	28.604	0.48685	28.6	28.411	28.898	-0.0042572					30	16	3	0	0	0	0.41616	1	5026	5026		1.1933	0.92432	1	128100			29603	9255	17130	17131	36422	36422					0.08717114199293974
MKVIFWFE	8	Unmodified	_MKVIFWFE_					0	0	0		ENST00000437190.1_1_1:173409695-173409833:-|nuORF	ENST00000437190.1_1_1:173409695-173409833:-|nuORF	ENST00000437190.1_1_1:173409695-173409833:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2844848632812	2	550.285889	1098.55722	0.47396	0.00026081	-2.6783	-0.0014738	-2.2044	-0.001213	550.2846996612467	43.336	0.56964	43.42	43.14	43.71	0.083992					47	20	3	0	0	0	0.43043	1	9524	9524		12.532	0	1	369120			29604	10529	17131	17132	36423	36423					0.011887765819210472
MKVIFWFE	8	Unmodified	_MKVIFWFE_					0	0	0		ENST00000437190.1_1_1:173409695-173409833:-|nuORF	ENST00000437190.1_1_1:173409695-173409833:-|nuORF	ENST00000437190.1_1_1:173409695-173409833:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	550.285889	1098.55722	0.3597	0.00019794	-2.1177	-0.0011653	-1.758	-0.0009674	550.2852628137125	43.523	0.54536	43.523	43.333	43.878	0	0.045505	0.00053701	NaN	12.532	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319230			29605	10529	17131	17132							0.011887765819210472
MKVIFWFE	8	Unmodified	_MKVIFWFE_					0	0	0		ENST00000437190.1_1_1:173409695-173409833:-|nuORF	ENST00000437190.1_1_1:173409695-173409833:-|nuORF	ENST00000437190.1_1_1:173409695-173409833:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	550.285889	1098.55722	0.59089	0.00032516	-2.7526	-0.0015147	-2.1617	-0.0011896	550.2845524250611	43.413	0.50217	43.49	43.234	43.736	0.077515	0.012356	-0.00016178	NaN	12.532	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	401710			29606	10529	17131	17132							0.011887765819210472
MKVIIFLLFLL	11	Unmodified	_MKVIIFLLFLL_					0	0	0			REV__ENST00000457354.6_1_14:51712054-51713868:+|nuORF	REV__ENST00000457354.6_1_14:51712054-51713868:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2474060058594	3	450.625822	1348.85564	0.20543	9.257E-05	-0.32333	-0.0001457	-0.11791	-5.3133E-05	450.62568182420466	67.706	0.51239	67.706	67.398	67.911	0					22	17	2	0	0	0	0.33236	1	17034	17034		4.4062	1.7749	1	121370	+		29607	21180	17132	17133	36424	36424					0.1951643477473226
MKVTNCKEILL	11	Unmodified	_MKVTNCKEILL_					0	0	0			REV__ENST00000593111.1_1_17:40986588-40991030:+|nuORF	REV__ENST00000593111.1_1_17:40986588-40991030:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.8614501953125	2	646.359259	1290.70396	0.17175	0.00011101	0.066968	4.3285E-05	0.23872	0.0001543	646.3595955395996	103.61	0.60604	103.61	103.53	104.13	0.0082626					252	83	5	0	0	0	0.44828	4	27523	27523;27529;27553;27608		4.897	1.6157	1	7080200	+		29608	15515	17133	17134	36425;36426;36427;36428	36425					0.07024085684702186
MKVTNCKEILL	11	Unmodified	_MKVTNCKEILL_					0	0	0			REV__ENST00000593111.1_1_17:40986588-40991030:+|nuORF	REV__ENST00000593111.1_1_17:40986588-40991030:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	646.3583374023438	2	646.359259	1290.70396	0.31068	0.00020081	-0.14091	-9.1078E-05	0.16977	0.00010973	646.3590345566248	103.75	0.66933	103.75	103.64	104.31	-0.0011139					172	90	3	0	0	0	0.44828	2	27579	27579;27689		4.897	1.6157	1	5878200	+		29609	15515	17133	17134	36429;36430	36429					0.07024085684702186
MKVTNCKEILL	11	Unmodified	_MKVTNCKEILL_					0	0	0			REV__ENST00000593111.1_1_17:40986588-40991030:+|nuORF	REV__ENST00000593111.1_1_17:40986588-40991030:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	646.3367309570312	2	646.359259	1290.70396	0.31068	0.00020081	-0.14091	-9.1078E-05	0.16977	0.00010973	646.3590345566248	103.75	0.66933	103.75	103.64	104.31	-0.0011139					172	90	3	0	0	0	0.33175	1	27706	27706		4.897	1.6157	1	5878200	+		29610	15515	17133	17134	36431	36431					0.07024085684702186
MLALQSIFF	9	Unmodified	_MLALQSIFF_					0	0	0			REV__ENSG00000196539|ENST00000359594|OR2T3	REV__ENSG00000196539|ENST00000359594|OR2T3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7719116210938	2	535.291171	1068.56779	0.47054	0.00025187	-0.052419	-2.8059E-05	0.41812	0.00022382	535.2910954850247	43.276	0.40786	43.276	43.087	43.494	0					21	14	2	0	0	0	0.24913	1	9553	9553		12.532	0	1	192780	+		29611	18253	17134	17135	36432	36432					0.03624759236367936
MLARNHLEV	9	Unmodified	_MLARNHLEV_					0	0	0		ENST00000421176.3_1_19:44576381-44576411:+|nuORF	ENST00000421176.3_1_19:44576381-44576411:+|nuORF	ENST00000421176.3_1_19:44576381-44576411:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.8194580078125	2	541.792401	1081.57025	0.72057	0.0003904	-1.6821	-0.00091133	-0.9615	-0.00052093	541.7915678976917	40.265	0.36174	40.364	40.201	40.563	0.099407					20	12	2	0	0	0	0.22674	1	8556	8556		17.113	2.2746	1	167500			29612	10370	17135	17136	36433	36433					0.03272607694020735
MLAYTHIL	8	Unmodified	_MLAYTHIL_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2840881347656	2	481.262413	960.510274	0.094581	4.5518E-05	1.8803	0.0009049	1.9748	0.00095042	481.2632537786025	82.031	0.72418	82.1	81.65	82.374	0.068993					43	30	2	0	0	0	0.34218	1	21325	21325		9.3474	0	1	258590			29613	7325	17136	17137	36434	36434					0.02843917030781995
MLAYTHIL	8	Unmodified	_MLAYTHIL_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2840576171875	2	481.262413	960.510274	0.32649	0.00015713	1.6707	0.00080403	1.9972	0.00096116	481.26318210756307	82.085	0.70077	82.061	81.77	82.471	-0.02404					36	27	2	0	0	0	0.34218	1	21357	21357		9.3474	0	1	228680			29614	7325	17136	17137	36435	36435					0.02843917030781995
MLCFVRHNRL	10	Unmodified	_MLCFVRHNRL_					0	0	0			REV__ENST00000488620.5_1_9:116327559-116353744:+|nuORF	REV__ENST00000488620.5_1_9:116327559-116353744:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	645.3801879882812	2	644.841902	1287.66925	0.50154	0.00032342	1.1125	0.00071741	1.6141	0.0010408	644.8425706101044	71.06	0.41509	71.035	70.744	71.159	-0.024872					19	14	2	0	0	0	0.31691	1	17987	17987		9.3831	3.1773	1	218870	+		29615	21576	17137	17138	36436	36436					0.03692307387245819
MLCKDVLAAS	10	Unmodified	_MLCKDVLAAS_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2928466796875	2	525.769745	1049.52494	0.428	0.00022503	-1.6826	-0.00088468	-1.2546	-0.00065965	525.7696239553078	17.863	0.48222	17.863	17.568	18.051	0					19	15	2	0	0	0	0.32054	1	1748	1748		3.2813	0.70383	1	27829			29616	403	17138	17139	36437	36437					0.0021562111660387018
MLCMWESLS	9	Unmodified	_MLCMWESLS_					0	0	0		ENST00000351773.7_1_10:38407230-38407275:+|nuORF	ENST00000351773.7_1_10:38407230-38407275:+|nuORF	ENST00000351773.7_1_10:38407230-38407275:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2997436523438	2	550.234681	1098.45481	0.38519	0.00021194	-2.6038	-0.0014327	-2.2186	-0.0012208	550.2335395873123	67.084	0.7085	67.084	66.514	67.222	0					35	24	2	0	0	0	0.24913	1	16781	16781		7.9102	0.62092	1	119580			29617	9579	17139	17140	36438	36438					-0.09048000543498347
MLDCDCVLAN	10	Unmodified	_MLDCDCVLAN_					0	0	0			REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7875366210938	2	548.72722	1095.43989	0.28816	0.00015812	0.92917	0.00050986	1.2173	0.00066798	548.7274670709138	15.212	0.24833	15.103	15.01	15.259	-0.10981					11	8	2	0	0	0	0.32054	1	943	943		3.2813	0.70383	1	20979	+		29618	16389	17140	17141	36439	36439					-0.10401492411529034
MLDIYWLLR	9	Unmodified	_MLDIYWLLR_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000457726.5_1_3:49742606-49750139:+|nuORF;ENST00000486102.5_1_3:49742606-49753136:+|nuORF	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.8359985351562	2	611.836277	1221.658	0.24855	0.00015207	-1.2623	-0.0007723	-1.0137	-0.00062023	611.8358606493732	24.563	0.42664	24.563	24.279	24.706	0					41	13	4	0	0	0	0.26127	1	3808	3808		0.52476	0	1	266300			29619	5778	17141	17142	36440	36440					0.056038085647742264
MLDKKGHII	9	Unmodified	_MLDKKGHII_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000492581.5_1_22:21065434-21067334:-|nuORF;ENST00000486209.5_1_22:21830876-21832684:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3447875976562	2	527.807519	1053.60049	0.50541	0.00026676	0.73287	0.00038681	1.2383	0.00065357	527.8079257968961	75.809	0.37476	75.778	75.588	75.962	-0.031487					19	13	2	0	0	0	0.25202	1	19432	19432		10.824	2.2306	1	205600			29620	8538	17142	17143	36441	36441					0.07582966359200327
MLDKKGHII	9	Unmodified	_MLDKKGHII_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000492581.5_1_22:21065434-21067334:-|nuORF;ENST00000486209.5_1_22:21830876-21832684:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	527.807519	1053.60049	0.20437	0.00010787	0.84448	0.00044572	1.0489	0.00055359	527.8079644768532	75.796	0.28535	75.796	75.618	75.903	0	-0.0044857	-0.00029652	NaN	10.824	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134890			29621	8538	17142	17143							0.07582966359200327
MLDKKGHII	9	Unmodified	_MLDKKGHII_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000492581.5_1_22:21065434-21067334:-|nuORF;ENST00000486209.5_1_22:21830876-21832684:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	527.807519	1053.60049	0.39768	0.0002099	1.406	0.0007421	1.8037	0.000952	527.8083002240152	75.775	0.32483	75.828	75.619	75.944	0.053413	0.027351	0.00029623	NaN	10.824	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119360			29622	8538	17142	17143							0.07582966359200327
MLDLKCKDDSV	11	Unmodified	_MLDLKCKDDSV_					0	0	0		ENSG00000100296|ENST00000490103|THOC5;ENST00000442555.5_1_22:29904448-29924274:-|nuORF	ENSG00000100296|ENST00000490103|THOC5	ENSG00000100296|ENST00000490103|THOC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.5449523925781	3	422.873796	1265.59956	0.17695	7.4827E-05	0.28275	0.00011957	0.4597	0.0001944	423.2086429094165	55.273	0.28448	55.344	55.188	55.473	0.070885					17	10	2	0	0	0	0.32719	1	13152	13152		7.0371	0	1	236310			29623	1561	17143	17144	36442	36442					-0.022616608626776724
MLDLMSSII	9	Unmodified	_MLDLMSSII_					0	0	0		nc|ENSG00000121892|Q29RF7-3|PDS5A;ENSG00000121892|ENST00000303538|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.78533935546875	2	511.766671	1021.51879	0.7094	0.00036305	2.9682	0.001519	3.6776	0.0018821	511.76821133078784	45.738	0.16611	45.738	45.666	45.832	0					7	5	2	0	0	0	0.20651	1	10261	10261		26.884	0	1	124820			29624	3016	17144	17145	36443	36443					0.008891028851053306
MLDSPATPSAA	11	Unmodified	_MLDSPATPSAA_					0	0	0		ENSG00000152284|ENST00000282111|TCF7L1	ENSG00000152284|ENST00000282111|TCF7L1	ENSG00000152284|ENST00000282111|TCF7L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3316040039062	2	530.752607	1059.49066	0.2589	0.00013741	-1.3063	-0.0006933	-1.0474	-0.00055589	530.7519142168928	73.297	0.4617	73.351	73.144	73.606	0.053833					28	16	2	0	0	0	0.32667	1	18746	18746		8.7454	0	1	151250			29625	5012	17145	17146	36444	36444					-0.03670503770649702
MLEREIAF	8	Unmodified	_MLEREIAF_					0	0	0		ENSG00000172967|ENST00000684488|XKR3	ENSG00000172967|ENST00000684488|XKR3	ENSG00000172967|ENST00000684488|XKR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2777099609375	2	504.762778	1007.511	0.70933	0.00035804	-0.026817	-1.3536E-05	0.68251	0.00034451	504.7626870182092	50.855	0.65302	50.865	50.567	51.22	0.0095634					45	24	2	0	0	0	0.38703	1	11914	11914		20.871	5.024	1	1230200			29626	6681	17146	17147	36445	36445					0.007547116798264142
MLERLEKQ	8	Unmodified	_MLERLEKQ_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.7523803710938	2	523.786784	1045.55902	0.73925	0.00038721	-3.8907	-0.0020379	-3.1515	-0.0016507	523.7849443674617	47.556	0.30267	47.556	47.38	47.682	0					12	10	2	0	0	0	0.33993	1	10784	10784		16.942	3.4344	1	111850			29627	412	17147	17148	36446	36446					0.03805785599865885
MLESFGTPLI	10	Unmodified	_MLESFGTPLI_					0	0	0		ENST00000243347.4_1_2:152236083-152236167:+|nuORF	ENST00000243347.4_1_2:152236083-152236167:+|nuORF	ENST00000243347.4_1_2:152236083-152236167:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.8477172851562	2	554.291368	1106.56818	0.39363	0.00021818	-1.6857	-0.00093436	-1.2921	-0.00071618	554.2892581613148	58.726	0.72703	58.726	58.328	59.055	0					49	24	3	0	0	0	0.30586	1	14195	14195		19.257	7.6167	1	194960			29628	8890	17148	17149	36447	36447					0.019161341655490105
MLESFGTPLI	10	Unmodified	_MLESFGTPLI_					0	0	0		ENST00000243347.4_1_2:152236083-152236167:+|nuORF	ENST00000243347.4_1_2:152236083-152236167:+|nuORF	ENST00000243347.4_1_2:152236083-152236167:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	554.291368	1106.56818	0.38699	0.00021451	-0.88891	-0.00049272	-0.50192	-0.00027821	554.2894920470217	58.474	0.65438	58.566	58.393	59.047	0.091301	-0.0804	0.00044625	NaN	13.906	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174090			29629	8890	17148	17149							0.019161341655490105
MLETVPLL	8	Unmodified	_MLETVPLL_					0	0	0		ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.770263671875	2	458.264622	914.514691	0.3714	0.0001702	-0.72809	-0.00033366	-0.35668	-0.00016345	458.26429558920785	84.226	0.64229	84.209	83.935	84.578	-0.016823					45	27	2	0	0	0	0.29855	1	22023	22023		24.674	0	1	452750			29630	23414	17149	17150	36448	36448					0.05401381453691556
MLEVVTSGKF	10	Unmodified	_MLEVVTSGKF_					0	0	0			REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7969360351562	2	555.796817	1109.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.81	1	115.81	115.31	116.31	0								0	0	0	0.37739	1	30002	30002		3.2813	0	1		+		29631	16723	17150	17151	36449	36449					0.028675365398157737
MLFEDRIL	8	Unmodified	_MLFEDRIL_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.7806396484375	2	518.778428	1035.5423	0.30269	0.00015703	1.0273	0.00053294	1.33	0.00068997	519.2798840650338	93.211	1.8707	93.211	92.189	94.06	0					288	152	3	0	0	0	0.4354	1	24743	24743		10.824	2.9138	1	395810	+		29632	18755	17151	17152	36450	36450					0.02595284713925139
MLFEDRIL	8	Unmodified	_MLFEDRIL_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7803955078125	2	518.778428	1035.5423	0.29839	0.0001548	0.86513	0.00044881	1.1635	0.00060361	519.2796370340491	93.064	1.7656	93.153	92.23	93.996	0.089203					271	144	3	0	0	0	0.42077	4	24697	24611;24654;24697;24736		15.847	3.3156	1	539930	+		29633	18755	17151	17152	36451;36452;36453;36454	36453					0.02595284713925139
MLFEDRIL	8	Unmodified	_MLFEDRIL_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7802734375	2	518.778428	1035.5423	0.45303	0.00023502	1.0915	0.00056627	1.5446	0.00080129	519.2796087917612	93.185	1.6257	93.184	92.337	93.962	-0.00050354					216	132	2	0	0	0	0.32038	4	24714	24627;24671;24714;24752		28.487	12.64	1	1087000	+		29634	18755	17151	17152	36455;36456;36457;36458	36457					0.02595284713925139
MLFNSVLRQ	9	Unmodified	_MLFNSVLRQ_					0	0	0		ENSG00000143476|ENST00000366991|DTL;nc|ENSG00000143476|Q9NZJ0-2|DTL	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3191528320312	2	554.302601	1106.59065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.998	1	46.998	46.498	47.498	0								0	0	0	0.15136	1	10637	10637		34.402	3.7652	1				29635	4519	17152	17153	36459	36459					0.041617783538185904
MLFPGDPCGF	10	Unmodified	_MLFPGDPCGF_					0	0	0		ENST00000264669.9_1_5:7863024-7863063:-|nuORF	ENST00000264669.9_1_5:7863024-7863063:-|nuORF	ENST00000264669.9_1_5:7863024-7863063:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2359008789062	2	542.235538	1082.45652	0.61077	0.00033118	-0.15144	-8.2115E-05	0.45933	0.00024907	542.2355619727691	66.434	2.3077	66.434	65.634	67.942	0					214	81	4	0	0	0	0.09872	2	16764	16713;16764		48.346	14.159	1	2645900			29636	9030	17153	17154	36460;36461	36461					-0.08140623463236807
MLFPGDPCGF	10	Unmodified	_MLFPGDPCGF_					0	0	0		ENST00000264669.9_1_5:7863024-7863063:-|nuORF	ENST00000264669.9_1_5:7863024-7863063:-|nuORF	ENST00000264669.9_1_5:7863024-7863063:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2359008789062	2	542.235538	1082.45652	0.63674	0.00034526	-0.39597	-0.00021471	0.24077	0.00013055	542.2355116607084	66.269	2.0382	66.353	65.571	67.609	0.083832					221	73	5	0	0	0	0.18807	2	16626	16626;16731		34.102	0	1	2834200			29637	9030	17153	17154	36462;36463	36462					-0.08140623463236807
MLFPGDPCGF	10	Unmodified	_MLFPGDPCGF_					0	0	0		ENST00000264669.9_1_5:7863024-7863063:-|nuORF	ENST00000264669.9_1_5:7863024-7863063:-|nuORF	ENST00000264669.9_1_5:7863024-7863063:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.23583984375	2	542.235538	1082.45652	0.54093	0.00029331	-0.04135	-2.2422E-05	0.49958	0.00027089	542.2355809051753	66.388	1.8141	66.374	65.639	67.453	-0.013596					189	64	4	0	0	0	0.09872	2	16726	16726;16779		48.346	14.159	1	2855900			29638	9030	17153	17154	36464;36465	36464					-0.08140623463236807
MLFTVVVPI	9	Unmodified	_MLFTVVVPI_					0	0	0		nc|ENSG00000036565|P54219-2|SLC18A1;nc|ENSG00000036565|P54219-3|SLC18A1;ENSG00000036565|ENST00000276373|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	nc|ENSG00000036565|P54219-2|SLC18A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.804443359375	2	509.803914	1017.59328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.25	1	114.25	113.75	114.75	0								0	0	0	0.26334	1	29646	29646		2.0598	0	1				29639	580	17154	17155	36466	36466					0.08518233758763927
MLFYIAAL	8	Unmodified	_MLFYIAAL_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.25140380859375	2	471.261882	940.509211	0.02802	1.3205E-05	-0.45204	-0.00021303	-0.42402	-0.00019982	471.26159231605425	24.958	0.58862	24.902	24.661	25.25	-0.055931					49	20	3	0	0	0	0.43455	1	3994	3994		11.114	0	1	293400	+		29640	17772	17155	17156	36467	36467					0.03657702661860185
MLFYIAAL	8	Unmodified	_MLFYIAAL_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.25115966796875	2	471.261882	940.509211	-0.1323	-6.2348E-05	-0.33915	-0.00015983	-0.47145	-0.00022218	471.26169001373427	24.942	0.58351	24.911	24.653	25.237	-0.031408					50	19	3	0	0	0	0.43455	1	3979	3979		11.114	0.29054	1	247660	+		29641	17772	17155	17156	36468	36468					0.03657702661860185
MLGLLFHL	8	Unmodified	_MLGLLFHL_					0	0	0		ENST00000483485.5_1_20:17934679-17937653:-|nuORF	ENST00000483485.5_1_20:17934679-17937653:-|nuORF	ENST00000483485.5_1_20:17934679-17937653:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2833251953125	2	472.275324	942.536095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.005	1	91.005	90.505	91.505	0.00046539								0	0	0	0.3683	1	24136	24136		6.3541	1.5981	1				29642	11061	17156	17157	36469	36469					0.06252811273066072
MLGTCAWSSPF	11	Unmodified	_MLGTCAWSSPF_					0	0	0			REV__ENST00000323883.11_1_10:22862298-22862370:-|nuORF	REV__ENST00000323883.11_1_10:22862298-22862370:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.2655029296875	2	600.264827	1198.5151	0.20255	0.00012158	1.0329	0.00062	1.2354	0.00074158	600.2652425777146	65.166	0.91089	65.166	64.91	65.821	0					66	32	3	0	0	0	0.16442	2	16240	16240;16287		34.402	5.3201	1	1070800	+		29643	19982	17157	17158	36470;36471	36470					-0.07621566888769848
MLGTCAWSSPF	11	Unmodified	_MLGTCAWSSPF_					0	0	0			REV__ENST00000323883.11_1_10:22862298-22862370:-|nuORF	REV__ENST00000323883.11_1_10:22862298-22862370:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.7802734375	2	600.264827	1198.5151	0.20255	0.00012158	1.0329	0.00062	1.2354	0.00074158	600.2652425777146	65.166	0.91089	65.166	64.91	65.821	0					66	32	3	0	0	0	0.3239	1	16188	16188		12.241	0.60036	1	1070800	+		29644	19982	17157	17158	36472	36472					-0.07621566888769848
MLGTCAWSSPF	11	Unmodified	_MLGTCAWSSPF_					0	0	0			REV__ENST00000323883.11_1_10:22862298-22862370:-|nuORF	REV__ENST00000323883.11_1_10:22862298-22862370:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.2653198242188	2	600.264827	1198.5151	0.24686	0.00014818	0.96743	0.00058071	1.2143	0.00072889	600.2652271374834	65.045	0.7316	65.133	64.844	65.576	0.088882					68	26	4	0	0	0	0.23983	1	16207	16207		27.629	4.8925	1	1144000	+		29645	19982	17157	17158	36473	36473					-0.07621566888769848
MLHQVLVQL	9	Unmodified	_MLHQVLVQL_					0	0	0		ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7719116210938	2	540.815344	1079.61614	0.58496	0.00031635	-3.6252	-0.0019606	-3.0402	-0.0016442	540.8129630377698	72.909	0.3586	72.909	72.775	73.133	0					18	12	2	0	0	0	0.24311	1	18619	18619		16.942	1.0951	1	80199			29646	1539	17158	17159	36474	36474					0.07951252876250692
MLHQVLVQL	9	Unmodified	_MLHQVLVQL_					0	0	0		ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7715454101562	2	540.815344	1079.61614	0.70159	0.00037943	-3.8647	-0.0020901	-3.1631	-0.0017107	540.8131665924534	72.941	0.27486	72.912	72.767	73.042	-0.029305					15	9	2	0	0	0	0.19839	1	18567	18567		28.487	12.64	1	71092			29647	1539	17158	17159	36475	36475					0.07951252876250692
MLHSALVLI	9	Unmodified	_MLHSALVLI_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8204650878906	2	498.799163	995.583773	0.56214	0.00028039	-2.5188	-0.0012564	-1.9567	-0.000976	498.7978784844636	85.217	0.28012	85.298	85.203	85.483	0.080879					13	10	2	0	0	0	0.21137	1	22369	22369		18.135	0	1	78309			29648	5202	17159	17160	36476	36476					0.08580465473244203
MLHSVWRLM	9	Unmodified	_MLHSVWRLM_					0	0	0		USP44|p.I413Mfs*26|1|0.12|ENSG00000136014|chr12:95533021-95533022|-/GATTTTTAAGAATCTTATTTTCATC|frameshift_variant	USP44|p.I413Mfs*26|1|0.12|ENSG00000136014|chr12:95533021-95533022|-/GATTTTTAAGAATCTTATTTTCATC|frameshift_variant	USP44|p.I413Mfs*26|1|0.12|ENSG00000136014|chr12:95533021-95533022|-/GATTTTTAAGAATCTTATTTTCATC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.833740234375	2	586.806996	1171.59944	0.5271	0.00030931	-3.2267	-0.0018934	-2.6996	-0.0015841	586.8050224389127	79.455	0.41528	79.426	79.182	79.598	-0.028931					25	16	2	0	0	0	0.24311	1	20627	20627		16.942	2.104	1	104680			29649	23411	17160	17161	36477	36477					0.020504287186213332
MLHYANGK	8	Unmodified	_MLHYANGK_					0	0	0			REV__nc|ENSG00000121644|Q9BSY9-2|DESI2	REV__nc|ENSG00000121644|Q9BSY9-2|DESI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2583312988281	2	467.234187	932.453822	0.12471	5.8267E-05	-1.1665	-0.00054504	-1.0418	-0.00048678	467.23368021787763	62.75	0.51453	62.845	62.634	63.148	0.095722					32	18	2	0	0	0	0.34046	1	15470	15470		9.3474	0	1	289370	+		29650	15126	17161	17162	36478	36478					-0.01510710805882809
MLHYANGK	8	Unmodified	_MLHYANGK_					0	0	0			REV__nc|ENSG00000121644|Q9BSY9-2|DESI2	REV__nc|ENSG00000121644|Q9BSY9-2|DESI2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	467.234187	932.453822	0.036962	1.727E-05	-1.0121	-0.00047289	-0.97514	-0.00045562	467.2336818976654	62.858	0.70411	62.858	62.552	63.256	0	-0.019546	5.8493E-05	NaN	9.3474	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314840	+		29651	15126	17161	17162							-0.01510710805882809
MLIFDNTFS	9	Unmodified	_MLIFDNTFS_					0	0	0		ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1	ENSG00000163820|ENST00000296137|FYCO1	ENSG00000163820|ENST00000296137|FYCO1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2694091796875	2	544.260068	1086.50558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.452	1	62.549	62.049	63.049	0.096985								0	0	0	0.22666	1	15401	15401		13.906	0.39817	1				29652	5740	17162	17163	36479	36479					-0.034210119026511165
MLIGGFVALV	10	Unmodified	_MLIGGFVALV_					0	0	0			REV__nc|ENSG00000135218|P16671-4|CD36	REV__nc|ENSG00000135218|P16671-4|CD36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7715759277344	2	510.301539	1018.58852	0.62253	0.00031768	2.9973	0.0015295	3.6198	0.0018472	510.301904076319	55.78	0.28147	55.78	55.539	55.82	0					11	9	2	0	0	0	0.30586	1	13325	13325		18.135	8.7875	1	132930	+		29653	22996	17163	17164	36480	36480					0.07997349616005067
MLIHLTYF	8	Unmodified	_MLIHLTYF_					0	0	0			REV__ENST00000495446.1_1_7:48146425-48146533:+|nuORF	REV__ENST00000495446.1_1_7:48146425-48146533:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2975463867188	2	519.278063	1036.54157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.631	1	66.631	66.131	67.131	0								0	0	0	0.33625	1	16688	16688		20.871	0	1		+		29654	21660	17164	17165	36481	36481					0.024764900648506227
MLIHLTYF	8	Unmodified	_MLIHLTYF_					0	0	0			REV__ENST00000495446.1_1_7:48146425-48146533:+|nuORF	REV__ENST00000495446.1_1_7:48146425-48146533:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2975463867188	2	519.278063	1036.54157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.439	1	66.523	66.023	67.023	0.083832								0	0	0	0.23984	1	16622	16622		38.151	7.9264	1		+		29655	21660	17164	17165	36482	36482					0.024764900648506227
MLILIPWLG	9	Unmodified	_MLILIPWLG_					0	0	0			REV__ENST00000587250.3_1_17:41178007-41180165:+|nuORF	REV__ENST00000587250.3_1_17:41178007-41180165:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3198852539062	2	528.319731	1054.62491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.158	1	17.158	16.658	17.658	0								0	0	0	0.26258	1	1545	1545		2.3027	0	1		+		29656	22532	17165	17166	36483	36483					0.09978226512725996
MLILIPWLG	9	Unmodified	_MLILIPWLG_					0	0	0			REV__ENST00000587250.3_1_17:41178007-41180165:+|nuORF	REV__ENST00000587250.3_1_17:41178007-41180165:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3196411132812	2	528.319731	1054.62491	0.22756	0.00012023	-0.65537	-0.00034625	-0.42781	-0.00022602	528.3191505043022	17.271	0.32233	17.154	16.909	17.231	-0.11739					20	11	2	0	0	0	0.34374	1	1586	1586		2.3027	0	1	31330	+		29657	22532	17165	17166	36484	36484					0.09978226512725996
MLILVGLGFP	10	Unmodified	_MLILVGLGFP_					0	0	0		ENST00000489322.5_1_22:24226412-24227033:+|nuORF;ENST00000461809.5_1_22:24225898-24227033:+|nuORF;nc|ENSG00000133460|Q9BYW1|SLC2A11;ENSG00000133460|ENST00000316185|SLC2A11;nc|ENSG00000133460|Q9BYW1-4|SLC2A11	ENST00000489322.5_1_22:24226412-24227033:+|nuORF	ENST00000489322.5_1_22:24226412-24227033:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3316650390625	2	530.317189	1058.61982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.498	1	73.469	72.969	73.969	-0.029305								0	0	0	0.35542	1	18774	18774		12.532	0	1				29658	3713	17166	17167	36485	36485					0.09285922650110479
MLINEKEELLK	11	Unmodified	_MLINEKEELLK_					0	0	0		WWC2|p.E372Dfs*3|1|0.68|ENSG00000151718|chr4:183253918-183253918|A/-|frameshift_variant;nc|ENSG00000151718|Q6AWC2-5|WWC2;nc|ENSG00000151718|Q6AWC2-3|WWC2;nc|ENSG00000151718|Q6AWC2-2|WWC2;nc|ENSG00000151718|Q6AWC2-4|WWC2;ENSG00000151718|ENST00000403733|WWC2;nc|ENSG00000151718|Q6AWC2-6|WWC2	WWC2|p.E372Dfs*3|1|0.68|ENSG00000151718|chr4:183253918-183253918|A/-|frameshift_variant	WWC2|p.E372Dfs*3|1|0.68|ENSG00000151718|chr4:183253918-183253918|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.25732421875	3	453.923256	1358.74794	0.22735	0.0001032	0.040335	1.8309E-05	0.26769	0.00012151	453.9233894747602	29.761	1.2641	29.773	29.469	30.733	0.012266					158	43	5	0	0	0	0.39244	1	5442	5442		12.228	0	1	2217400			29659	4979	17167	17168	36486	36486					0.08291393382683054
MLINGKRPF	9	Unmodified	_MLINGKRPF_					0	0	0			REV__ENST00000297591.9_1_8:95541456-95543220:-|nuORF	REV__ENST00000297591.9_1_8:95541456-95543220:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7950439453125	2	538.307687	1074.60082	0.53289	0.00028686	-1.5528	-0.0008359	-1.0199	-0.00054905	538.8085726006177	57.919	0.18377	57.901	57.821	58.005	-0.0172					12	6	3	0	0	0	0.24542	1	13995	13995		9.3474	4.5914	1	254320	+		29660	19804	17168	17169	36487	36487					0.0665038607905899
MLIPPFTLI	9	Unmodified	_MLIPPFTLI_					0	0	0		nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.81201171875	2	522.811739	1043.60893	0.52243	0.00027313	0.16561	8.6585E-05	0.68804	0.00035972	522.8116124860893	86.147	1.1727	86.231	85.863	87.036	0.084251					107	46	4	0	0	0	0.32415	1	22733	22733		5.2307	0	1	2057500			29661	5115	17169	17170	36488	36488					0.08886520275837029
MLIQFLCVFL	10	Unmodified	_MLIQFLCVFL_					0	0	0			REV__ENST00000413670.2_1_1:98510427-98510946:-|nuORF	REV__ENST00000413670.2_1_1:98510427-98510946:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.83740234375	2	613.837431	1225.66031	-0.13903	-8.5344E-05	0.1589	9.754E-05	0.019869	1.2196E-05	613.8374658536226	60.129	1.0005	60.129	59.819	60.819	0					108	36	4	0	0	0	0.34053	1	14731	14731		16.942	6.1184	1	8969800	+		29662	20795	17170	17171	36489	36489					0.05650520978224449
MLKLEGDER	9	Unmodified	_MLKLEGDER_					0	0	0			REV__ENST00000537175.1_1_12:16554719-16554995:-|nuORF	REV__ENST00000537175.1_1_12:16554719-16554995:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8060913085938	2	545.781699	1089.54884	0.72804	0.00039735	-1.1284	-0.00061587	-0.40037	-0.00021852	545.7820845948769	66.044	1.6723	66.128	64.928	66.6	0.083832					76	61	2	0	0	0	0.23784	1	16336	16336		19.257	1.1106	1	366960	+		29663	22090	17171	17172	36490	36490					0.007651778746094351
MLKLEGDER	9	Unmodified	_MLKLEGDER_					0	0	0			REV__ENST00000537175.1_1_12:16554719-16554995:-|nuORF	REV__ENST00000537175.1_1_12:16554719-16554995:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	545.781699	1089.54884	0.66383	0.00036231	-0.090145	-4.9199E-05	0.57369	0.00031311	545.7822528260219	66.136	0.67359	66.136	65.899	66.573	0	0.0032663	0.00029995	NaN	19.257	45	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465990	+		29664	22090	17171	17172							0.007651778746094351
MLKLEGDER	9	Unmodified	_MLKLEGDER_					0	0	0			REV__ENST00000537175.1_1_12:16554719-16554995:-|nuORF	REV__ENST00000537175.1_1_12:16554719-16554995:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	545.781699	1089.54884	0.64054	0.00034959	-0.1959	-0.00010692	0.44464	0.00024268	545.7822071223114	66.147	0.74725	66.134	65.824	66.572	-0.013588	0.00138	0.00018451	NaN	19.257	41	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351270	+		29665	22090	17171	17172							0.007651778746094351
MLKLPYCEHL	10	Unmodified	_MLKLPYCEHL_					0	0	0		ENSG00000196119|ENST00000284287|OR8A1;nc|ENSG00000196119|Q8NGG7|OR8A1	ENSG00000196119|ENST00000284287|OR8A1	ENSG00000196119|ENST00000284287|OR8A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.90777587890625	3	416.215605	1245.62499	0.05546	2.3083E-05	-1.3154	-0.0005475	-1.26	-0.00052441	416.2154734078485	33.796	0.74828	33.863	33.549	34.298	0.066704					63	26	3	0	0	0	0.31876	1	6512	6512		7.1017	2.6956	1	363760			29666	7823	17172	17173	36491	36491					0.011998584503999155
MLLDDTISP	9	Unmodified	_MLLDDTISP_					0	0	0		ENST00000393485.5_1_7:115580607-115581081:-|nuORF;nc|ENSG00000105967|O14948-4|TFEC;nc|ENSG00000105967|O14948-2|TFEC;ENSG00000105967|ENST00000265440|TFEC	ENST00000393485.5_1_7:115580607-115581081:-|nuORF	ENST00000393485.5_1_7:115580607-115581081:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.77435302734375	2	502.752075	1003.4896	-0.0065454	-3.2907E-06	-3.7157	-0.0018681	-3.7223	-0.0018714	502.75097365201856	42.535	0.0774	42.535	42.49	42.567	0					4	2	2	0	0	0	0.2451	1	9264	9264		15.847	1.0089	1	79106			29667	2040	17173	17174	36492	36492					-0.012007181395460975
MLLEHTPP	8	Unmodified	_MLLEHTPP_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.24212646484375	2	469.244221	936.473888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.92	1	86.92	86.42	87.42	0								0	0	0	0.37078	1	22898	22898		5.2307	0.90143	1				29668	6063	17174	17175	36493	36493					0.0031104013405638398
MLLERKLC	8	Unmodified	_MLLERKLC_					0	0	0			REV__ENSG00000110367|ENST00000534980|DDX6	REV__ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.7842712402344	2	503.282823	1004.55109	0.3693	0.00018586	0.57932	0.00029156	0.94862	0.00047742	503.78405184255126	81.994	0.5484	81.97	81.615	82.164	-0.02404					37	21	2	0	0	0	0.43727	1	21373	21373		10.183	0	1	238840	+		29669	14666	17175	17176	36494	36494					0.0489993507875397
MLLFLHWKS	9	Unmodified	_MLLFLHWKS_					0	0	0			REV__ENST00000534269.5_1_6:136596825-136597029:-|nuORF	REV__ENST00000534269.5_1_6:136596825-136597029:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.825927734375	2	587.825712	1173.63687	0.303	0.00017811	0.13009	7.6471E-05	0.43309	0.00025458	587.825761290037	20	0.37377	20	19.739	20.113	0					24	13	3	0	0	0	0.34681	1	2376	2376		1.8442	0.36234	1	86613	+		29670	22050	17176	17177	36495	36495					0.05699843255911219
MLLFLHWKS	9	Unmodified	_MLLFLHWKS_					0	0	0			REV__ENST00000534269.5_1_6:136596825-136597029:-|nuORF	REV__ENST00000534269.5_1_6:136596825-136597029:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.8252563476562	2	587.825712	1173.63687	0.42855	0.00025191	0.012021	7.0665E-06	0.44057	0.00025898	587.8256432585653	20.176	0.31293	20.06	19.869	20.182	-0.11592					21	10	3	0	0	0	0.34681	1	2447	2447		1.8442	0.36234	1	77594	+		29671	22050	17176	17177	36496	36496					0.05699843255911219
MLLFLHWKS	9	Unmodified	_MLLFLHWKS_					0	0	0			REV__ENST00000534269.5_1_6:136596825-136597029:-|nuORF	REV__ENST00000534269.5_1_6:136596825-136597029:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	587.825712	1173.63687	0.303	0.00017811	0.13009	7.6471E-05	0.43309	0.00025458	587.825761290037	20	0.37377	20	19.739	20.113	0	-0.016183	0.00025243	NaN	1.8442	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86613	+		29672	22050	17176	17177							0.05699843255911219
MLLFLHWKS	9	Unmodified	_MLLFLHWKS_					0	0	0			REV__ENST00000534269.5_1_6:136596825-136597029:-|nuORF	REV__ENST00000534269.5_1_6:136596825-136597029:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	587.825712	1173.63687	0.42855	0.00025191	0.012021	7.0665E-06	0.44057	0.00025898	587.8256432585653	20.176	0.31293	20.06	19.869	20.182	-0.11592	0.043122	0.00011362	NaN	1.8442	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77594	+		29673	22050	17176	17177							0.05699843255911219
MLLFLHWKS	9	Unmodified	_MLLFLHWKS_					0	0	0			REV__ENST00000534269.5_1_6:136596825-136597029:-|nuORF	REV__ENST00000534269.5_1_6:136596825-136597029:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	587.825712	1173.63687	0.58054	0.00034126	-0.69288	-0.00040729	-0.11234	-6.6036E-05	587.8254481375521	20.045	0.35771	19.99	19.762	20.119	-0.055693	-0.026939	-0.00071509	NaN	1.8442	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72639	+		29674	22050	17176	17177							0.05699843255911219
MLLHFFCL	8	Unmodified	_MLLHFFCL_					0	0	0		nc|ENSG00000286105|A0A494BZU4|TMEM217B;ENST00000356757.6_1_6:37180235-37180745:-|nuORF	nc|ENSG00000286105|A0A494BZU4|TMEM217B	nc|ENSG00000286105|A0A494BZU4|TMEM217B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2977294921875	2	512.261359	1022.50817	-0.19311	-9.8925E-05	2.5914	0.0013275	2.3983	0.0012286	512.2627696754413	59.858	0.41541	59.953	59.631	60.047	0.095093					17	14	2	0	0	0	0.31651	1	14522	14522		24.21	0	1	173210			29675	9624	17177	17178	36497	36497					-0.002188349786706567
MLLKVTEQCF	10	Unmodified	_MLLKVTEQCF_					0	0	0		ENSG00000104613|ENST00000397977|INTS10;ENST00000523869.1_2_8:19675786-19680957:+|nuORF	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.9292297363281	3	404.54361	1210.609	-0.21736	-8.7932E-05	-3.6077	-0.0014595	-3.825	-0.0015474	404.54111794377945	42.732	0.5715	42.732	42.383	42.954	0					32	20	3	0	0	0	0.32051	1	9252	9252		1.9064	0	1	123390			29676	1901	17178	17179	36498	36498					0.012121522135203122
MLLLAHCMK	9	Unmodified	_MLLLAHCMK_					0	0	0		ENST00000342572.12_1_17:80401329-80401857:-|nuORF	ENST00000342572.12_1_17:80401329-80401857:-|nuORF	ENST00000342572.12_1_17:80401329-80401857:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7620849609375	2	530.279226	1058.5439	0.60445	0.00032053	-0.10743	-5.6965E-05	0.49703	0.00026356	530.2790798557841	89.286	0.48829	89.286	89.007	89.495	0					36	22	2	0	0	0	0.18943	1	23573	23573		30.225	4.8255	1	166620			29677	9531	17179	17180	36499	36499					0.016968792066563765
MLLLRVCK	8	Unmodified	_MLLLRVCK_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2596435546875	2	488.295733	974.576914	0.099261	4.8469E-05	-1.1851	-0.00057869	-1.0859	-0.00053022	488.29530893454216	17.707	0.37262	17.59	17.467	17.84	-0.11739					16	12	2	0	0	0	0.34437	1	1774	1774		0.69038	0	1	51809			29678	3655	17180	17181	36500	36500					0.08860829321019992
MLLPAFVFIGL	11	Unmodified	_MLLPAFVFIGL_					0	0	0		ENSG00000169908|ENST00000305366|TM4SF1	ENSG00000169908|ENST00000305366|TM4SF1	ENSG00000169908|ENST00000305366|TM4SF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.57489013671875	3	407.575239	1219.70389	-0.029951	-1.2207E-05	-0.81154	-0.00033076	-0.84149	-0.00034297	407.57469183590223	38.226	0.53804	38.324	37.927	38.465	0.09753					63	18	4	0	0	0	0.40313	1	7906	7906		5.4027	0	1	749920			29679	6402	17181	17182	36501	36501					0.10282453747004183
MLLQSPVTL	9	Unmodified	_MLLQSPVTL_					0	0	0		ENST00000496279.5_1_7:90338868-90339238:+|nuORF	ENST00000496279.5_1_7:90338868-90339238:+|nuORF	ENST00000496279.5_1_7:90338868-90339238:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2579345703125	2	501.288628	1000.5627	0.34077	0.00017082	-1.908	-0.00095647	-1.5673	-0.00078565	501.2875217707367	80.63	0.80765	80.603	80.06	80.868	-0.026825					53	28	2	0	0	0	0.1939	1	20919	20919		24.021	3.5669	1	424910			29680	11231	17182	17183	36502	36502					0.06244455373735036
MLLTFFFF	8	Unmodified	_MLLTFFFF_					0	0	0			REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF	REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7964477539062	2	533.277532	1064.54051	0.058051	3.0957E-05	-0.97376	-0.00051929	-0.91571	-0.00048833	533.2768123478737	13.084	0.33762	13.017	12.851	13.189	-0.067495					22	11	3	0	0	0	0.344	1	298	298		2.5775	0.92486	1	76951	+		29681	17466	17183	17184	36503	36503					0.010822756959669277
MLLTFFFF	8	Unmodified	_MLLTFFFF_					0	0	0			REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF	REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	533.277532	1064.54051	0.1505	8.0256E-05	-0.88917	-0.00047417	-0.73867	-0.00039392	533.2768104026809	13.038	0.24651	13.038	12.9	13.147	0	0.010796	5.6035E-05	NaN	2.5775	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78106	+		29682	17466	17183	17184							0.010822756959669277
MLLTMSHF	8	Unmodified	_MLLTMSHF_					0	0	0			REV__ENSG00000198938|ENST00000362079|MT-CO3	REV__ENSG00000198938|ENST00000362079|MT-CO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7976379394531	2	490.240624	978.466695	0.22727	0.00011142	0.16355	8.0179E-05	0.39082	0.0001916	490.2405855703973	23.689	0.57041	23.617	23.396	23.966	-0.072559					26	19	2	0	0	0	0.31375	1	3529	3529		26.341	0	1	66121	+		29683	18896	17184	17185	36504	36504					-0.023400157380137898
MLLTYYMWI	9	Unmodified	_MLLTYYMWI_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.57867431640625	3	411.873068	1232.59737	0.12499	5.148E-05	-0.64324	-0.00026493	-0.51825	-0.00021345	411.87252415558464	29.502	0.73434	29.502	29.3	30.034	0					46	25	2	0	0	0	0.25949	1	5361	5361		4.897	0	1	77094			29684	3830	17185	17186	36505	36505					-0.009620448098303314
MLLVVAVTI	9	Oxidation (M)	_M(Oxidation (M))LLVVAVTI_		M(1)LLVVAVTI		M(74)LLVVAVTI	0	0	1		nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.8004455566406	2	487.801371	973.58819	0.35834	0.0001748	-3.6282	-0.0017699	-3.2699	-0.0015951	487.80038505754413	82.127	2.3942	82.127	81.769	84.163	0					254	91	3	0	0	0	0.013276	1	21964	21964		74.396	10.833	1	100190000			29685	13016	17186	17187	36506	36506		987			0.10033929896178506
MLLVWPLQ	8	Unmodified	_MLLVWPLQ_					0	0	0			REV__ENST00000380787.5_1_X:10535592-10851693:-|nuORF	REV__ENST00000380787.5_1_X:10535592-10851693:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.82373046875	2	500.288431	998.562309	0.22696	0.00011355	4.0645	0.0020334	4.2914	0.002147	501.29395245474643	65.4	0.13848	65.4	65.293	65.431	0					8	4	3	0	0	0	0.34185	1	16289	16289		10.183	0.83596	1	42980	+		29686	20556	17187	17188	36507	36507					0.06297080444539915
MLLWKPPK	8	Unmodified	_MLLWKPPK_					0	0	0			REV__ENST00000305623.12_1_10:5327839-5330384:-|nuORF	REV__ENST00000305623.12_1_10:5327839-5330384:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7586975097656	2	506.804248	1011.59394	0.45215	0.00022915	1.338	0.00067811	1.7902	0.00090726	506.8050029582674	45.326	0.27702	45.326	45.175	45.452	0					14	9	2	0	0	0	0.34218	1	10109	10109		9.3474	0	1	178290	+		29687	19852	17188	17189	36508	36508					0.08861073198477243
MLLWKPPK	8	Unmodified	_MLLWKPPK_					0	0	0			REV__ENST00000305623.12_1_10:5327839-5330384:-|nuORF	REV__ENST00000305623.12_1_10:5327839-5330384:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	506.804248	1011.59394	0.53029	0.00026875	2.2871	0.0011591	2.8174	0.0014279	506.8055641200731	45.244	0.28011	45.312	45.204	45.484	0.068569	-0.007126	0.00031993	NaN	13.508	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109320	+		29688	19852	17188	17189							0.08861073198477243
MLMCVSISF	9	Unmodified	_MLMCVSISF_					0	0	0			REV__ENST00000380738.8_1_9:15465218-15465287:-|nuORF	REV__ENST00000380738.8_1_9:15465218-15465287:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.247802734375	2	515.742142	1029.46973	0.51024	0.00026315	-2.3117	-0.0011923	-1.8015	-0.0009291	515.7405760699164	74.85	0.83858	74.818	74.528	75.367	-0.031479					32	21	2	0	0	0	0.155	1	19340	19340		30.225	3.3412	1	402700	+		29689	20553	17189	17190	36509	36509					-0.04382508675507779
MLMCVSISF	9	Unmodified	_MLMCVSISF_					0	0	0			REV__ENST00000380738.8_1_9:15465218-15465287:-|nuORF	REV__ENST00000380738.8_1_9:15465218-15465287:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	515.742142	1029.46973	0.6091	0.00031414	-2.3301	-0.0012017	-1.721	-0.0008876	515.740571839289	74.921	0.4473	74.921	74.731	75.178	0	0.051512	-1.127E-05	NaN	30.225	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291330	+		29690	20553	17189	17190							-0.04382508675507779
MLMCVSISF	9	Unmodified	_MLMCVSISF_					0	0	0			REV__ENST00000380738.8_1_9:15465218-15465287:-|nuORF	REV__ENST00000380738.8_1_9:15465218-15465287:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	515.742142	1029.46973	0.51024	0.00026315	-2.3117	-0.0011923	-1.8015	-0.0009291	515.7405760699164	74.85	0.83858	74.818	74.528	75.367	-0.031479	-0.051512	7.7066E-06	NaN	30.225	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402700	+		29691	20553	17189	17190							-0.04382508675507779
MLMRLTLT	8	Unmodified	_MLMRLTLT_					0	0	0			REV__ENST00000492809.5_1_3:51994845-51995337:-|nuORF	REV__ENST00000492809.5_1_3:51994845-51995337:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.26416015625	2	489.777373	977.540194	0.34663	0.00016977	-3.4085	-0.0016694	-3.0619	-0.0014996	489.7756988879188	52.207	0.35136	52.257	52.172	52.523	0.050575					17	12	2	0	0	0	0.31934	1	12304	12304		12.532	3.9383	1	298390	+		29692	14039	17190	17191	36510	36510					0.05052532704451096
MLMYLYKSDKF	11	Unmodified	_MLMYLYKSDKF_					0	0	0			REV__nc|ENSG00000185532|Q13976-3|PRKG1	REV__nc|ENSG00000185532|Q13976-3|PRKG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.80010986328125	3	480.24182	1437.70363	0.29961	0.00014389	-1.3188	-0.00063334	-1.0192	-0.00048945	480.24124228857903	51.463	0.12542	51.463	51.382	51.508	0					5	4	2	0	0	0	0.33277	1	12000	12000		1.4551	0	1	98772	+		29693	18388	17191	17192	36511	36511					0.0022866596480071166
MLPCCLLFL	9	Unmodified	_MLPCCLLFL_					0	0	0			REV__ENSG00000172935|ENST00000309099|MRGPRF	REV__ENSG00000172935|ENST00000309099|MRGPRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2828369140625	2	526.770702	1051.52685	0.58786	0.00030967	-3.0824	-0.0016237	-2.4945	-0.0013141	526.7695285694793	89.755	0.10336	89.755	89.698	89.802	0					11	7	2	0	0	0	0.25811	1	23758	23758		5.2307	0	1	41582	+		29694	17748	17192	17193	36512	36512					0.003149586008703409
MLPGVLQQF	9	Oxidation (M)	_M(Oxidation (M))LPGVLQQF_		M(1)LPGVLQQF		M(100)LPGVLQQF	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.77880859375	2	524.778428	1047.5423	0.58512	0.00030706	0.093293	4.8958E-05	0.67841	0.00035601	524.7782548029695	72.158	1.3322	72.158	71.773	73.105	0					93	48	3	0	0	0	0.00268	2	18397	18347;18397		104.8	68.672	1	1048800			29695	1891	17193	17194	36513;36514	36514		230			0.02043284713909088
MLPGVLQQF	9	Oxidation (M)	_M(Oxidation (M))LPGVLQQF_		M(1)LPGVLQQF		M(110)LPGVLQQF	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7787475585938	2	524.778428	1047.5423	0.60715	0.00031862	0.069829	3.6645E-05	0.67698	0.00035526	524.7782718265378	72.076	1.1142	72.133	71.812	72.926	0.056572					93	40	3	0	0	0	0.00207	2	18367	18367;18416		109.63	57.361	1	1283800			29696	1891	17193	17194	36515;36516	36515		230			0.02043284713909088
MLPGVLQQF	9	Oxidation (M)	_M(Oxidation (M))LPGVLQQF_		M(1)LPGVLQQF		M(97)LPGVLQQF	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.778564453125	2	524.778428	1047.5423	0.5974	0.0003135	0.20801	0.00010916	0.80542	0.00042266	524.7783352402159	72.196	1.6082	72.169	71.819	73.427	-0.027275					101	57	3	0	0	0	0.0036555	2	18349	18349;18397		97.075	53.216	1	1177300			29697	1891	17193	17194	36517;36518	36517		230			0.02043284713909088
MLPPVGPM	8	Unmodified	_MLPPVGPM_					0	0	0			REV__ENST00000577324.1_1_17:30677304-30687987:+|nuORF	REV__ENST00000577324.1_1_17:30677304-30687987:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.22894287109375	2	421.21916	840.423767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.877	1	64.866	64.366	65.366	-0.011337								0	0	0	0.3683	1	16140	16140		6.3541	3.4649	1		+		29698	13412	17194	17195	36519	36519					-0.0028278579543439264
MLPTRQVNY	9	Unmodified	_MLPTRQVNY_					0	0	0			REV__ENSG00000256870|ENST00000536262|SLC5A8	REV__ENSG00000256870|ENST00000536262|SLC5A8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3163452148438	2	561.292233	1120.56991	0.29525	0.00016572	0.055128	3.0943E-05	0.35038	0.00019666	561.7951613579194	93.836	0.41859	93.923	93.708	94.127	0.08667					41	32	2	0	0	0	0.24848	1	25037	25037		13.906	0	1	58506	+		29699	19256	17195	17196	36520	36520					0.014451879741500306
MLQQRYPK	8	Unmodified	_MLQQRYPK_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7760009765625	2	532.289494	1062.56443	0.56826	0.00030248	2.7373	0.001457	3.3056	0.0017595	532.2903269804355	40.077	1.1485	40.176	39.788	40.936	0.099407					92	41	4	0	0	0	0.33916	1	8603	8603		26.341	6.9023	1	677330			29700	6576	17196	17197	36521	36521					0.03565509182340065
MLQYMCYLMEE	11	Unmodified	_MLQYMCYLMEE_					0	0	0		ENST00000463742.1_1_8:103935654-103935939:-|nuORF	ENST00000463742.1_1_8:103935654-103935939:-|nuORF	ENST00000463742.1_1_8:103935654-103935939:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002014160156	3	485.200527	1452.57975	0.40322	0.00019564	0.76502	0.00037119	1.1682	0.00056683	485.53500360842037	63.857	0.36072	63.857	63.665	64.026	0					15	12	2	0	0	0	0.33287	1	15820	15820		2.8433	2.0668	1	108260			29701	10771	17197	17198	36522	36522					-0.12843496189316284
MLRAGRRAPLP	11	Unmodified	_MLRAGRRAPLP_					0	0	0		ENST00000389266.7_1_7:30634467-30634563:+|nuORF	ENST00000389266.7_1_7:30634467-30634563:+|nuORF	ENST00000389266.7_1_7:30634467-30634563:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8714599609375	2	619.369141	1236.72373	0.37078	0.00022965	1.1818	0.00073194	1.5525	0.00096159	619.370569418945	91.757	1.4647	91.757	91.303	92.768	0.00046539					206	95	3	0	0	0	0.44192	1	24427	24427		5.7319	0.43497	1	1022300			29702	10019	17198	17199	36523	36523					0.11483642530333782
MLRGAVIIF	9	Unmodified	_MLRGAVIIF_					0	0	0		ENSG00000213699|ENST00000344420|SLC35F6	ENSG00000213699|ENST00000344420|SLC35F6	ENSG00000213699|ENST00000344420|SLC35F6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8319091796875	2	510.307155	1018.59976	0.56809	0.0002899	0.057822	2.9507E-05	0.62591	0.00031941	510.3073422431931	65.97	0.16858	65.97	65.899	66.068	0					8	5	2	0	0	0	0.23783	1	16475	16475		18.135	3.5533	1	80729			29703	8361	17199	17200	36524	36524					0.09120171710151226
MLRNCWVF	8	Unmodified	_MLRNCWVF_					0	0	0		ENST00000400274.5_1_21:47989006-47989108:+|nuORF	ENST00000400274.5_1_21:47989006-47989108:+|nuORF	ENST00000400274.5_1_21:47989006-47989108:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7721557617188	2	534.759515	1067.50448	0.23153	0.00012381	1.8651	0.0009974	2.0967	0.0011212	535.262929295049	42.906	0.48476	42.998	42.663	43.147	0.091362					23	17	2	0	0	0	0.33995	1	9407	9407		15.768	1.1865	1	332590			29704	10184	17200	17201	36525	36525					-0.026575047525511764
MLRNILKCL	9	Unmodified	_MLRNILKCL_					0	0	0			REV__ENSG00000129675|ENST00000250617|ARHGEF6	REV__ENSG00000129675|ENST00000250617|ARHGEF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8062133789062	2	552.325022	1102.63549	0.48729	0.00026914	2.5065	0.0013844	2.9938	0.0016536	552.3262143810186	64.653	0.31196	64.644	64.523	64.835	-0.0095291					22	10	3	0	0	0	0.24311	1	16062	16062		11.64	4.9171	1	121740	+		29705	15427	17201	17202	36526	36526					0.08827885895493637
MLRVRSMSRVK	11	Unmodified	_MLRVRSMSRVK_					0	0	0		nc|ENSG00000151948|Q96MS3-3|GLT1D1	nc|ENSG00000151948|Q96MS3-3|GLT1D1	nc|ENSG00000151948|Q96MS3-3|GLT1D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2433776855469	3	454.932203	1361.77478	-0.079416	-3.6129E-05	2.4773	0.001127	2.3979	0.0010909	454.9330829335816	28.422	0.5842	28.422	28.207	28.791	0					37	19	3	0	0	0	0.33274	1	5004	5004		3.5927	0.52041	1	174760			29706	12762	17202	17203	36527	36527					0.10836223512865217
MLSELLLR	8	Unmodified	_MLSELLLR_					0	0	0			REV__ENST00000402966.1_1_22:42092721-42093255:+|nuORF	REV__ENST00000402966.1_1_22:42092721-42093255:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.788818359375	2	487.788795	973.563038	0.3548	0.00017307	-0.62123	-0.00030303	-0.26644	-0.00012996	487.788714773337	63.416	0.67994	63.416	63.117	63.797	0					41	24	2	0	0	0	0.23494	1	15714	15714		46.021	0	1	349850	+		29707	20719	17203	17204	36528	36528					0.07519875093601058
MLSELLLR	8	Unmodified	_MLSELLLR_					0	0	0			REV__ENST00000402966.1_1_22:42092721-42093255:+|nuORF	REV__ENST00000402966.1_1_22:42092721-42093255:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.78857421875	2	487.788795	973.563038	0.38751	0.00018902	-0.5029	-0.00024531	-0.11539	-5.6288E-05	487.78883493752204	63.315	0.64916	63.41	63.148	63.797	0.095722					40	22	2	0	0	0	0.2646	1	15688	15688		37.974	0	1	364350	+		29708	20719	17203	17204	36529	36529					0.07519875093601058
MLSELLLR	8	Unmodified	_MLSELLLR_					0	0	0			REV__ENST00000402966.1_1_22:42092721-42093255:+|nuORF	REV__ENST00000402966.1_1_22:42092721-42093255:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.76226806640625	2	487.788795	973.563038	0.43666	0.000213	-1.1163	-0.00054454	-0.67969	-0.00033154	487.78879596693116	63.412	0.77536	63.404	63.136	63.911	-0.0085526					47	27	2	0	0	0	0.20083	1	15671	15671		61.357	0	1	320230	+		29709	20719	17203	17204	36530	36530					0.07519875093601058
MLSPEHAP	8	Unmodified	_MLSPEHAP_					0	0	0		ENSG00000157404|ENST00000288135|KIT;nc|ENSG00000157404|P10721-2|KIT;nc|ENSG00000157404|P10721-4|KIT	ENSG00000157404|ENST00000288135|KIT	ENSG00000157404|ENST00000288135|KIT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2434387207031	2	441.212921	880.411288	0.12788	5.6423E-05	-1.0753	-0.00047444	-0.94742	-0.00041801	441.21136282768595	75.509	1.485	75.561	74.703	76.188	0.052368					93	54	3	0	0	0	0.34218	1	19173	19173		9.3474	0	1	237320			29710	5304	17204	17205	36531	36531					-0.03370105934129697
MLSQLAQKE	9	Unmodified	_MLSQLAQKE_					0	0	0			REV__ENST00000580193.1_1_18:14630000-14630792:-|nuORF	REV__ENST00000580193.1_1_18:14630000-14630792:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2684936523438	2	524.278792	1046.54303	-0.45966	-0.00024099	0.10083	5.2861E-05	-0.35884	-0.00018813	524.2787598672646	34.975	0.91418	35.052	34.614	35.528	0.077377					98	32	4	0	0	0	0.12642	1	7072	7072		34.402	0.29928	1	1553800	+		29711	15084	17205	17206	36532	36532					0.02162079362960867
MLSSPMEL	8	Unmodified	_MLSSPMEL_					0	0	0			REV__nc|ENSG00000198947|P11532-4|DMD	REV__nc|ENSG00000198947|P11532-4|DMD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2062683105469	2	454.216814	906.419076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.327	1	80.392	79.892	80.892	0.065094								0	0	0	0.36336	1	20861	20861		8.5933	0	1		+		29712	18899	17206	17207	36533	36533					-0.03787714728866831
MLSTVKFY	8	Unmodified	_MLSTVKFY_					0	0	0		ENST00000433184.1_1_5:149340451-149341605:+|nuORF	ENST00000433184.1_1_5:149340451-149341605:+|nuORF	ENST00000433184.1_1_5:149340451-149341605:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.27716064453125	2	494.762246	987.50994	0.40477	0.00020027	3.1687	0.0015678	3.5735	0.001768	494.7635004848717	23.592	0.37298	23.553	23.364	23.737	-0.038927					28	12	3	0	0	0	0.33993	1	3493	3493		16.942	0	1	57620			29713	10488	17207	17208	36534	36534					0.015684973109159728
MLTDEGWII	9	Unmodified	_MLTDEGWII_					0	0	0			REV__ENSG00000172115|ENST00000305786|CYCS	REV__ENSG00000172115|ENST00000305786|CYCS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8065795898438	2	539.267893	1076.52123	0.56548	0.00030495	-1.9069	-0.0010283	-1.3414	-0.0007234	539.2668817971495	62.566	0.29422	62.566	62.316	62.611	0					14	10	2	0	0	0	0.21905	1	15398	15398		23.148	1.4018	1	79098	+		29714	17693	17208	17209	36535	36535					-0.013967253855980744
MLTFAACSF	9	Unmodified	_MLTFAACSF_					0	0	0			REV__ENSG00000205330|ENST00000642104|OR6C1	REV__ENSG00000205330|ENST00000642104|OR6C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.28704833984375	2	495.724806	989.43506	0.37082	0.00018383	-0.80956	-0.00040132	-0.43873	-0.00021749	495.7243466352383	59.056	0.40287	59.056	58.864	59.267	0					24	14	2	0	0	0	0.21905	1	14355	14355		23.148	2.6948	1	154530	+		29715	18987	17209	17210	36536	36536					-0.060080084919604815
MLTFSTPLQM	10	Unmodified	_MLTFSTPLQM_					0	0	0			REV__ENSG00000112658|ENST00000265354|SRF	REV__ENSG00000112658|ENST00000265354|SRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8212890625	2	584.790678	1167.5668	0.34852	0.00020381	-3.6971	-0.002162	-3.3485	-0.0019582	584.7902831029453	69.051	1.0415	69.032	68.396	69.438	-0.01915					54	36	2	0	0	0	0.27337	1	17435	17435		29.082	1.4528	1	170840	+		29716	14782	17210	17211	36537	36537					-0.01027823194863231
MLTLSCTSITL	11	Unmodified	_MLTLSCTSITL_					0	0	0			REV__ENSG00000185634|ENST00000332408|SHC4	REV__ENSG00000185634|ENST00000332408|SHC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8311767578125	2	591.809067	1181.60358	0.31606	0.00018705	2.7592	0.0016329	3.0753	0.00182	591.8105865001701	64.927	0.42242	65.016	64.794	65.216	0.088882					24	15	2	0	0	0	0.18241	1	16107	16107		32.786	11.039	1	256150	+		29717	18393	17211	17212	36538	36538					0.020044286310394455
MLTLSCTSITL	11	Unmodified	_MLTLSCTSITL_					0	0	0			REV__ENSG00000185634|ENST00000332408|SHC4	REV__ENSG00000185634|ENST00000332408|SHC4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	591.809067	1181.60358	0.17325	0.00010253	2.8099	0.0016629	2.9831	0.0017655	592.3122641623189	65.015	0.3325	65.015	64.858	65.19	0	-0.0051209	9.8831E-05	NaN	32.786	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164490	+		29718	18393	17211	17212							0.020044286310394455
MLTLSCTSITL	11	Unmodified	_MLTLSCTSITL_					0	0	0			REV__ENSG00000185634|ENST00000332408|SHC4	REV__ENSG00000185634|ENST00000332408|SHC4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	591.809067	1181.60358	0.31606	0.00018705	2.7592	0.0016329	3.0753	0.00182	591.8105865001701	64.927	0.42242	65.016	64.794	65.216	0.088882	-0.0044661	3.8839E-05	NaN	32.786	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256150	+		29719	18393	17211	17212							0.020044286310394455
MLTLSCTSITL	11	Unmodified	_MLTLSCTSITL_					0	0	0			REV__ENSG00000185634|ENST00000332408|SHC4	REV__ENSG00000185634|ENST00000332408|SHC4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	591.809067	1181.60358	0.082916	4.9071E-05	2.6437	0.0015646	2.7266	0.0016136	591.8103565066115	65.042	0.45477	65.03	64.833	65.288	-0.011337	0.0095869	-9.7858E-05	NaN	32.786	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361740	+		29720	18393	17211	17212							0.020044286310394455
MLTSVLDNAQK	11	Unmodified	_MLTSVLDNAQK_					0	0	0			REV__ENSG00000157483|ENST00000288235|MYO1E	REV__ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5711975097656	3	407.216551	1218.62782	-0.021314	-8.6795E-06	0.20962	8.5359E-05	0.1883	7.668E-05	407.2166102821665	39.583	1.0012	39.682	39.396	40.397	0.099407					95	35	4	0	0	0	0.3239	1	8476	8476		6.6235	0.3891	1	2171700	+		29721	16786	17212	17213	36539	36539					0.02725405108913037
MLVDMYSLLF	10	Unmodified	_MLVDMYSLLF_					0	0	0			REV__ENST00000579186.1_1_17:30368040-30368955:+|nuORF	REV__ENST00000579186.1_1_17:30368040-30368955:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.9031066894531	3	411.208228	1230.60285	-0.065764	-2.7043E-05	0.1564	6.4315E-05	0.090641	3.7272E-05	411.20830071234997	42.755	1.0846	42.846	42.554	43.639	0.091362					99	39	4	0	0	0	0.318	1	9533	9533		1.9064	0	1	1742900	+		29722	22472	17213	17214	36540	36540					-0.003223660180083243
MLVDMYSLLF	10	Unmodified	_MLVDMYSLLF_					0	0	0			REV__ENST00000579186.1_1_17:30368040-30368955:+|nuORF	REV__ENST00000579186.1_1_17:30368040-30368955:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	411.208228	1230.60285	-0.065146	-2.6788E-05	0.17166	7.0589E-05	0.10652	4.38E-05	411.2082585046891	43.259	0.91902	43.259	42.93	43.849	0	0.26351	7.7737E-05	NaN	3.8763	103	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1622500	+		29723	22472	17213	17214							-0.003223660180083243
MLVDMYSLLF	10	Unmodified	_MLVDMYSLLF_					0	0	0			REV__ENST00000579186.1_1_17:30368040-30368955:+|nuORF	REV__ENST00000579186.1_1_17:30368040-30368955:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.208228	1230.60285	0.099887	4.1074E-05	-0.059947	-2.4651E-05	0.03994	1.6424E-05	411.2081874031663	42.796	1.0972	42.882	42.565	43.662	0.085197	-0.11421	-0.00020798	NaN	3.8763	97	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1946500	+		29724	22472	17213	17214							-0.003223660180083243
MLVGLLTSVAG	11	Unmodified	_MLVGLLTSVAG_					0	0	0			REV__nc|ENSG00000185920|Q13635-4|PTCH1	REV__nc|ENSG00000185920|Q13635-4|PTCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3316650390625	2	530.807185	1059.59982	0.41335	0.00021941	-0.48012	-0.00025485	-0.066777	-3.5445E-05	530.8068643940288	73.395	0.39351	73.395	73.133	73.527	0					17	13	2	0	0	0	0.31824	1	18756	18756		19.257	0	1	55941	+		29725	18419	17214	17215	36541	36541					0.07240126919487011
MLVKHRLL	8	Unmodified	_MLVKHRLL_					0	0	0			REV__ENSG00000129219|ENST00000263088|PLD2	REV__ENSG00000129219|ENST00000263088|PLD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2897033691406	2	505.320597	1008.62664	0.3424	0.00017302	1.193	0.00060285	1.5354	0.00077587	505.8218162627057	59.793	0.16175	59.781	59.652	59.813	-0.011486					6	5	2	0	0	0	0.34185	1	14563	14563		5.7604	0	1	283350	+		29726	15405	17215	17216	36542	36542					0.12267280321350427
MLVLCFAYYI	10	Unmodified	_MLVLCFAYYI_					0	0	0			REV__nc|ENSG00000050130|Q9P055-3|JKAMP	REV__nc|ENSG00000050130|Q9P055-3|JKAMP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2279968261719	3	412.544951	1234.61302	-0.078783	-3.2502E-05	-0.56623	-0.0002336	-0.64501	-0.0002661	412.5448370034449	21.897	0.76499	21.897	21.487	22.252	0					34	27	2	0	0	0	0.3198	1	2966	2966		0.77653	0	1	76540	+		29727	13561	17216	17217	36543	36543					0.005102417072293974
MLVMGVVVVLL	11	Unmodified	_MLVMGVVVVLL_					0	0	0			REV__ENSG00000175283|ENST00000372586|DOLK	REV__ENSG00000175283|ENST00000372586|DOLK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8336791992188	2	586.860906	1171.70726	0.48267	0.00028326	4.4669	0.0026215	4.9496	0.0029047	587.3656328867244	82.661	0.29291	82.641	82.475	82.768	-0.020584					14	11	2	0	0	0	0.33219	1	21612	21612		1.4819	0	1	199020	+		29728	17885	17217	17218	36544	36544					0.1282738052939294
MLVPKILPP	9	Unmodified	_MLVPKILPP_					0	0	0			REV__ENST00000472910.5_1_7:105260689-105318420:-|nuORF	REV__ENST00000472910.5_1_7:105260689-105318420:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.3194885253906	2	504.319731	1006.62491	0.3286	0.00016572	-0.51997	-0.00026223	-0.19138	-9.6514E-05	504.3190784458773	80.92	1.3058	80.893	80.597	81.903	-0.026825					102	55	3	0	0	0	0.25879	1	21076	21076		0.52476	0	1	393630	+		29729	16356	17218	17219	36545	36545					0.12186226512721987
MLVPRCCSL	9	Unmodified	_MLVPRCCSL_					0	0	0		ENST00000566223.1_1_16:20814981-20817407:-|nuORF	ENST00000566223.1_1_16:20814981-20817407:-|nuORF	ENST00000566223.1_1_16:20814981-20817407:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.253173828125	2	511.253208	1020.49186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.209	1	72.182	71.682	72.682	-0.027275								0	0	0	0.22933	1	18382	18382		13.042	0	1				29730	11979	17219	17220	36546	36546					-0.01756284207101544
MLVSHPLT	8	Unmodified	_MLVSHPLT_					0	0	0		ENST00000343137.8_1_1:14108632-14108701:+|nuORF	ENST00000343137.8_1_1:14108632-14108701:+|nuORF	ENST00000343137.8_1_1:14108632-14108701:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.6083984375	2	449.246763	896.478974	0.39116	0.00017573	0.11789	5.296E-05	0.50905	0.00022869	449.24658916469303	87.033	0.51089	87.033	86.728	87.239	0					30	19	2	0	0	0	0.34337	1	22943	22943		2.3027	0	1	117550			29731	9540	17220	17221	36547	36547					0.026593439966859478
MLVVKGVCF	9	Unmodified	_MLVVKGVCF_					0	0	0		nc|ENSG00000168826|Q6ZSB9-4|ZBTB49;nc|ENSG00000168826|Q6ZSB9-3|ZBTB49;nc|ENSG00000168826|Q6ZSB9-5|ZBTB49;nc|ENSG00000168826|Q6ZSB9-2|ZBTB49;ENSG00000168826|ENST00000337872|ZBTB49	nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.73077392578125	2	498.274467	994.53438	0.64599	0.00032188	-0.29747	-0.00014822	0.34852	0.00017366	498.2743686755651	47.829	0.35313	47.829	47.634	47.987	0					19	12	2	0	0	0	0.15464	1	10878	10878		30.225	8.4782	1	1236400			29732	6304	17221	17222	36548	36548					0.03689434192801855
MLVVKGVCF	9	Unmodified	_MLVVKGVCF_					0	0	0		nc|ENSG00000168826|Q6ZSB9-4|ZBTB49;nc|ENSG00000168826|Q6ZSB9-3|ZBTB49;nc|ENSG00000168826|Q6ZSB9-5|ZBTB49;nc|ENSG00000168826|Q6ZSB9-2|ZBTB49;ENSG00000168826|ENST00000337872|ZBTB49	nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7308654785156	2	498.274467	994.53438	0.58266	0.00029033	0.080655	4.0188E-05	0.66332	0.00033052	498.27439155537513	47.834	0.34102	47.878	47.561	47.902	0.043324					20	12	2	0	0	0	0.18943	1	10854	10854		23.148	0	1	1088100			29733	6304	17221	17222	36549	36549					0.03689434192801855
MLWLIKVERL	10	Unmodified	_MLWLIKVERL_					0	0	0			REV__ENST00000543397.1_1_12:64488769-64491083:+|nuORF	REV__ENST00000543397.1_1_12:64488769-64491083:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.2746887207031	3	434.265176	1299.7737	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.284	1	79.255	78.755	79.755	-0.028931								0	0	0	0.37048	1	20536	20536		6.1918	0.40842	1		+		29734	22147	17222	17223	36550	36550					0.1358033241560861
MMESHQLMIK	10	Unmodified	_MMESHQLMIK_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.301025390625	2	624.300887	1246.58722	-0.11186	-6.9833E-05	0.4066	0.00025384	0.29474	0.00018401	624.3010664281801	39.246	0.97316	39.339	39.078	40.051	0.09267					92	34	4	0	0	0	0.3258	1	8282	8282		17.113	17.113	1	2461900			29735	7673	17223	17224	36551	36551					-0.02620975806712522
MMGSPGPAGPP	11	Unmodified	_MMGSPGPAGPP_					0	0	0			REV__ENSG00000145861|ENST00000652664|C1QTNF2	REV__ENSG00000145861|ENST00000652664|C1QTNF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2955017089844	2	499.725338	997.436123	0.35527	0.00017754	-2.7899	-0.0013942	-2.4346	-0.0012166	499.7238446862752	16.719	0.71346	16.657	16.414	17.127	-0.062532					32	24	2	0	0	0	0.33318	1	1540	1540		0.30703	0	1	102170	+		29736	16312	17224	17225	36552	36552					-0.06269794123045358
MMKKEIHIPV	10	Unmodified	_MMKKEIHIPV_					0	0	0		ENSG00000175066|ENST00000392993|GK5;ENST00000492097.5_1_3:141882642-141900319:-|nuORF;nc|ENSG00000175066|Q6ZS86-3|GK5	ENSG00000175066|ENST00000392993|GK5	ENSG00000175066|ENST00000392993|GK5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.9060363769531	3	409.231367	1224.67227	0.035201	1.4405E-05	-0.38292	-0.0001567	-0.34772	-0.0001423	409.5664928977189	31.425	0.17366	31.466	31.334	31.507	0.040991					6	5	2	0	0	0	0.32068	1	5845	5845		0.62683	0	1	42679			29737	6836	17225	17226	36553	36553					0.06892137721411018
MMKKKKKK	8	Unmodified	_MMKKKKKK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000102290|Q9BZA7-2|PCDH11X;ENST00000361724.3_1_X:91090458-91134302:+|nuORF;nc|ENSG00000099715|Q9BZA8-3|PCDH11Y;nc|ENSG00000099715|Q9BZA8-2|PCDH11Y;nc|ENSG00000102290|Q9BZA7-6|PCDH11X;nc|ENSG00000102290|Q9BZA7-7|PCDH11X;ENSG00000099715|ENST00000698851|PCDH11Y;nc|ENSG00000102290|Q9BZA7-5|PCDH11X;nc|ENSG00000102290|Q9BZA7-4|PCDH11X;nc|ENSG00000102290|Q9BZA7-3|PCDH11X;nc|ENSG00000102290|Q9BZA7-8|PCDH11X;nc|ENSG00000099715|Q9BZA8|PCDH11Y;ENSG00000102290|ENST00000682573|PCDH11X;nc|ENSG00000099715|Q9BZA8-4|PCDH11Y	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7828979492188	2	525.337932	1048.66131	0.64999	0.00034146	-0.21322	-0.00011201	0.43677	0.00022945	525.3376892297475	20.958	0.40222	20.958	20.678	21.08	0					21	13	2	0	0	0	0.34445	1	2624	2624		0	0	1	33995			29738	638	17226	17227	36554	36554					0.13892780137780392
MMKKKKKK	8	Unmodified	_MMKKKKKK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000102290|Q9BZA7-2|PCDH11X;ENST00000361724.3_1_X:91090458-91134302:+|nuORF;nc|ENSG00000099715|Q9BZA8-3|PCDH11Y;nc|ENSG00000099715|Q9BZA8-2|PCDH11Y;nc|ENSG00000102290|Q9BZA7-6|PCDH11X;nc|ENSG00000102290|Q9BZA7-7|PCDH11X;ENSG00000099715|ENST00000698851|PCDH11Y;nc|ENSG00000102290|Q9BZA7-5|PCDH11X;nc|ENSG00000102290|Q9BZA7-4|PCDH11X;nc|ENSG00000102290|Q9BZA7-3|PCDH11X;nc|ENSG00000102290|Q9BZA7-8|PCDH11X;nc|ENSG00000099715|Q9BZA8|PCDH11Y;ENSG00000102290|ENST00000682573|PCDH11X;nc|ENSG00000099715|Q9BZA8-4|PCDH11Y	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	525.337932	1048.66131	0.64052	0.00033649	-0.66186	-0.0003477	-0.021337	-1.1209E-05	525.3373784495425	21.069	0.45257	21.016	20.809	21.261	-0.05291	0.028842	-0.0001747	NaN	0	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41811			29739	638	17226	17227							0.13892780137780392
MMLQDFQIQ	9	Unmodified	_MMLQDFQIQ_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.2869873046875	2	577.272652	1152.53075	0.13785	7.9577E-05	0.026945	1.5554E-05	0.16479	9.5131E-05	577.2726725548837	27.168	0.68999	27.168	26.925	27.615	0					41	23	2	0	0	0	0.14076	1	4691	4691		32.305	13.049	1	442740			29740	959	17227	17228	36555	36555					-0.03941280371736866
MMRLYHLR	8	Unmodified	_MMRLYHLR_					0	0	0			REV__nc|ENSG00000037474|Q08J23-3|NSUN2	REV__nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.7758178710938	2	560.299339	1118.58412	0.30906	0.00017317	-1.7198	-0.00096363	-1.4108	-0.00079046	560.2980172869396	21.428	0.96222	21.379	20.783	21.745	-0.049377					71	33	3	0	0	0	0.34247	1	2796	2796		8.5933	6.0948	1	133620	+		29741	13511	17228	17229	36556	36556					0.029575619214483595
MMVPDQRIN	9	Unmodified	_MMVPDQRIN_					0	0	0		nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B;ARID1B|p.I1593Sfs*8|1|0.36|ENSG00000049618|chr6:157201409-157201409|G/-|frameshift_variant	nc|ENSG00000049618|Q8NFD5-1|ARID1B	nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2716064453125	2	552.270444	1102.52633	0.12486	6.8958E-05	0.28908	0.00015965	0.41395	0.00022861	552.2701958767373	12.241	0.36416	12.144	12.072	12.436	-0.096607					14	12	2	0	0	0	0.34536	1	84	84		2.0598	0.21551	1	29235			29742	653	17229	17230	36557	36557					-0.020827447946203392
MMWKFINF	8	Unmodified	_MMWKFINF_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2748413085938	2	558.772091	1115.52963	0.71803	0.00040122	4.1081	0.0022955	4.8261	0.0026967	558.7750608557899	78.434	0.62231	78.404	78.122	78.744	-0.030426					33	23	2	0	0	0	0.34218	1	20318	20318		9.3474	0.75416	1	200870			29743	858	17230	17231	36558	36558					-0.023514499499697195
MNCISRIKF	9	Unmodified	_MNCISRIKF_					0	0	0		ENST00000606397.1_1_X:114796968-114797016:-|nuORF	ENST00000606397.1_1_X:114796968-114797016:-|nuORF	ENST00000606397.1_1_X:114796968-114797016:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.303955078125	2	556.291179	1110.56781	0.11654	6.4829E-05	1.4335	0.00079743	1.55	0.00086226	556.292008649006	67.407	0.27	67.391	67.236	67.506	-0.016296					12	8	2	0	0	0	0.14076	1	16885	16885		32.305	1.6689	1	84650			29744	12298	17231	17232	36559	36559					0.016944359646913654
MNCSLHQLI	9	Unmodified	_MNCSLHQLI_					0	0	0		ENST00000282272.14_1_2:197852652-197852817:-|nuORF	ENST00000282272.14_1_2:197852652-197852817:-|nuORF	ENST00000282272.14_1_2:197852652-197852817:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2968139648438	2	529.759712	1057.50487	0.16782	8.8903E-05	-0.42861	-0.00022706	-0.2608	-0.00013816	529.75947027458	13.434	0.36989	13.434	13.227	13.597	0					25	12	3	0	0	0	0.26031	1	453	453		3.5965	0.8613	1	81080			29745	9125	17232	17233	36560	36560					-0.02158129823328636
MNFTKEFLY	9	Unmodified	_MNFTKEFLY_					0	0	0			REV__nc|ENSG00000171004|Q96MM7-2|HS6ST2	REV__nc|ENSG00000171004|Q96MM7-2|HS6ST2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.8396606445312	2	596.788992	1191.56343	0.34385	0.00020521	-4.2666	-0.0025463	-3.9227	-0.002341	597.2881198691398	39.31	0.54985	39.403	39.17	39.72	0.09267					23	19	2	0	0	0	0.24471	1	8325	8325		17.113	4.8722	1	228550	+		29746	17613	17233	17234	36561	36561					-0.024687499772198862
MNKVYIKQ	8	Unmodified	_MNKVYIKQ_					0	0	0			REV__ENST00000347328.9_1_12:50821677-50822762:+|nuORF	REV__ENST00000347328.9_1_12:50821677-50822762:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9854736328125	2	512.28642	1022.55829	0.17688	9.0615E-05	0.0014775	7.5691E-07	0.17836	9.1371E-05	512.2845061516596	94.572	0.11077	94.655	94.579	94.69	0.082779					16	9	3	0	0	0	0.34247	1	25224	25224		8.5933	4.6489	1	64298	+		29747	20157	17234	17235	36562	36562					0.04790990950834839
MNLLTGEPVVD	11	Unmodified	_MNLLTGEPVVD_					0	0	0			REV__ENST00000549347.1_1_12:48146586-48151861:-|nuORF	REV__ENST00000549347.1_1_12:48146586-48151861:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8281860351562	2	594.302464	1186.59037	0.44853	0.00026656	0.71288	0.00042366	1.1614	0.00069023	594.3026220998697	39.877	0.38416	39.976	39.817	40.201	0.099403					18	13	2	0	0	0	0.32736	1	8502	8502		8.1555	0	1	141640	+		29748	13868	17235	17236	36563	36563					0.004543138433064087
MNMVMWDKA	9	Unmodified	_MNMVMWDKA_					0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.2681274414062	2	563.248123	1124.48169	0.24609	0.00013861	1.6749	0.0009434	1.921	0.001082	563.2485876587751	69.014	0.31726	68.995	68.895	69.212	-0.019157					17	10	3	0	0	0	0.26612	1	17390	17390		13.906	0	1	134590	+		29749	16387	17236	17237	36564	36564					-0.07556891932313192
MNPFHSPL	8	Unmodified	_MNPFHSPL_					0	0	0			REV__ENST00000372718.7_1_1:40887792-40887975:+|nuORF	REV__ENST00000372718.7_1_1:40887792-40887975:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2591247558594	2	471.728738	941.442923	0.074324	3.5061E-05	0.83383	0.00039334	0.90815	0.0004284	471.7291581169252	75.996	0.29897	76.05	75.862	76.161	0.053413					16	10	2	0	0	0	0.34218	1	19537	19537		5.2307	2.6532	1	110850	+		29750	20418	17237	17238	36565	36565					-0.03014113180165623
MNPFHSPL	8	Unmodified	_MNPFHSPL_					0	0	0			REV__ENST00000372718.7_1_1:40887792-40887975:+|nuORF	REV__ENST00000372718.7_1_1:40887792-40887975:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	471.728738	941.442923	0.21051	9.9302E-05	0.25126	0.00011853	0.46176	0.00021783	471.728860860695	76.102	0.23114	76.071	75.931	76.163	-0.031487	0.019106	-0.00054799	NaN	5.2307	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121170	+		29751	20418	17237	17238							-0.03014113180165623
MNVLIGKKCKK	11	Unmodified	_MNVLIGKKCKK_					0	0	0			REV__nc|ENSG00000134317|Q9NZI5-2|GRHL1	REV__nc|ENSG00000134317|Q9NZI5-2|GRHL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.59014892578125	3	421.254283	1260.74102	-0.22939	-9.663E-05	-0.46259	-0.00019487	-0.69197	-0.0002915	421.2540989561233	28.235	0.3305	28.23	28.055	28.385	-0.0042572					24	11	3	0	0	0	0.33263	1	4889	4889		2.084	0	1	154290	+		29752	15665	17238	17239	36566	36566					0.12107802021114367
MPAFIFEHI	9	Oxidation (M)	_M(Oxidation (M))PAFIFEHI_		M(1)PAFIFEHI		M(130)PAFIFEHI	0	0	1		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.7781372070312	2	560.778428	1119.5423	0.43657	0.00024482	-0.47315	-0.00026533	-0.036574	-2.051E-05	560.7778737423913	65.776	1.1202	65.865	65.352	66.472	0.088882					122	40	4	0	0	0	0.00033206	1	16427	16427		131.3	84.377	1	1027400			29753	4062	17239	17240	36567	36567		514			-0.012687152860735296
MPAFIFEHI	9	Oxidation (M)	_M(Oxidation (M))PAFIFEHI_		M(1)PAFIFEHI		M(130)PAFIFEHI	0	0	1		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7785034179688	2	560.778428	1119.5423	0.37883	0.00021244	-0.2236	-0.00012539	0.15523	8.7048E-05	560.7779967930339	65.87	1.2921	65.859	65.372	66.664	-0.011337					129	46	4	0	0	0	0.00033206	1	16446	16446		131.3	93.147	1	1149900			29754	4062	17239	17240	36568	36568		514			-0.012687152860735296
MPAGTVMGQVY	11	Unmodified	_MPAGTVMGQVY_					0	0	0			REV__ENSG00000102034|ENST00000308167|ELF4	REV__ENSG00000102034|ENST00000308167|ELF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.2728271484375	2	577.272652	1152.53075	0.41384	0.0002389	-0.33124	-0.00019121	0.0826	4.7683E-05	577.2726504720731	21.674	1.1959	21.573	21.275	22.471	-0.10034					128	43	5	0	0	0	0.46819	1	3141	3141		2.2828	0.22302	1	3139800	+		29755	14302	17240	17241	36569	36569					-0.03941280371714129
MPAPQVGQHF	10	Unmodified	_MPAPQVGQHF_					0	0	0			REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1	REV__nc|ENSG00000142621|B1AJZ9-4|FHAD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8300170898438	2	556.271301	1110.52805	0.17915	9.9654E-05	0.30369	0.00016894	0.48284	0.00026859	556.2712058008631	27.146	0.73985	27.124	26.788	27.528	-0.021412					69	25	4	0	0	0	0.32132	1	4676	4676		1.4819	1.4819	1	402000	+		29756	16132	17241	17242	36570	36570					-0.022793677143681634
MPDDHARKI	9	Oxidation (M)	_M(Oxidation (M))PDDHARKI_		M(1)PDDHARKI		M(83)PDDHARKI	0	0	1		ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7718505859375	2	549.771665	1097.52878	0.071932	3.9546E-05	-0.16188	-8.8995E-05	-0.089945	-4.9449E-05	549.771559218351	13.778	0.75876	13.778	13.174	13.932	0					50	26	3	0	0	0	0.0079761	2	522	474;522		82.529	55.646	1	331390			29757	675;12574	17242	17243	36571;36572	36572		82			-0.016085730653230712
MPDDHARKI	9	Oxidation (M)	_M(Oxidation (M))PDDHARKI_		M(1)PDDHARKI		M(86)PDDHARKI	0	0	1		ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7717895507812	2	549.771665	1097.52878	0.091995	5.0576E-05	-0.29421	-0.00016175	-0.20221	-0.00011117	549.771501551225	13.873	0.50118	13.768	13.46	13.961	-0.10466					44	17	3	0	0	0	0.0054984	2	548	498;548		86.332	65.878	1	287290			29758	675;12574	17242	17243	36573;36574	36574		82			-0.016085730653230712
MPDDHARKI	9	Oxidation (M)	_M(Oxidation (M))PDDHARKI_		M(1)PDDHARKI		M(89)PDDHARKI	0	0	1		ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	ENSG00000052841|ENST00000039989|TTC17;nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7719116210938	2	549.771665	1097.52878	0.077607	4.2666E-05	0.073861	4.0607E-05	0.15147	8.3273E-05	549.7715920309216	13.887	0.50479	13.821	13.444	13.949	-0.066068					43	17	3	0	0	0	0.0046246	2	512	512;560		89.401	68.947	1	367550			29759	675;12574	17242	17243	36575;36576	36575		82			-0.016085730653230712
MPDDVLWLQ	9	Unmodified	_MPDDVLWLQ_					0	0	0		ENSG00000100344|ENST00000216180|PNPLA3;nc|ENSG00000100344|Q9NST1-2|PNPLA3;ENST00000406117.6_1_22:44322822-44359208:+|nuORF	ENSG00000100344|ENST00000216180|PNPLA3	ENSG00000100344|ENST00000216180|PNPLA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.297607421875	2	558.773342	1115.53213	0.31486	0.00017594	0.5197	0.00029039	0.83456	0.00046633	558.7742230783542	68.379	0.66143	68.379	68.15	68.812	0					37	24	2	0	0	0	0.22596	1	17254	17254		21.747	0	1	410590			29760	1573	17243	17244	36577	36577					-0.021013230113112513
MPDVGRSMQQL	11	2 Oxidation (M)	_M(Oxidation (M))PDVGRSM(Oxidation (M))QQL_		M(1)PDVGRSM(1)QQL		M(61)PDVGRSM(61)QQL	0	0	2		nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000427635.6_1_10:69682690-69747802:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.3002319335938	2	647.29993	1292.58531	0.64348	0.00041652	-0.16785	-0.00010865	0.47563	0.00030787	647.2998969029983	29.438	0.59615	29.438	29.089	29.686	0					52	21	3	0	0	0	0.023365	1	5269	5269		60.943	33.72	1	310350			29761	4821	17244	17245	36578	36578		600;601			-0.04928313290929509
MPDVGRSMQQL	11	2 Oxidation (M)	_M(Oxidation (M))PDVGRSM(Oxidation (M))QQL_		M(1)PDVGRSM(1)QQL		M(91)PDVGRSM(91)QQL	0	0	2		nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000427635.6_1_10:69682690-69747802:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.3001708984375	2	647.29993	1292.58531	0.56319	0.00036456	-0.76434	-0.00049476	-0.20115	-0.0001302	647.2996319742974	29.954	0.83954	29.954	29.686	30.525	0					81	29	4	0	0	0	0.0014237	2	5402	5402;5457		90.964	50.725	1	405150			29762	4821	17244	17245	36579;36580	36579		600;601			-0.04928313290929509
MPDVGRSMQQL	11	2 Oxidation (M)	_M(Oxidation (M))PDVGRSM(Oxidation (M))QQL_		M(1)PDVGRSM(1)QQL		M(55)PDVGRSM(55)QQL	0	0	2		nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000427635.6_1_10:69682690-69747802:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.3001708984375	2	647.29993	1292.58531	0.40782	0.00026398	-0.04873	-3.1543E-05	0.35909	0.00023244	647.3000159230085	29.305	0.63236	29.317	29.053	29.685	0.012266					56	21	3	0	0	0	0.042306	2	5208	5208;5261		55.467	30.585	1	310800			29763	4821	17244	17245	36581;36582	36581		600;601			-0.04928313290929509
MPDVGRSMQQL	11	2 Oxidation (M)	_M(Oxidation (M))PDVGRSM(Oxidation (M))QQL_		M(1)PDVGRSM(1)QQL		M(65)PDVGRSM(65)QQL	0	0	2		nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000427635.6_1_10:69682690-69747802:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.2999267578125	2	647.29993	1292.58531	0.43963	0.00028457	-0.76313	-0.00049397	-0.3235	-0.0002094	647.2996864160126	30.04	1.0239	30.056	29.658	30.682	0.016441					84	35	4	0	0	0	0.012355	2	5443	5443;5497		64.688	27.613	1	406700			29764	4821	17244	17245	36583;36584	36583		600;601			-0.04928313290929509
MPDVGRSMQQL	11	2 Oxidation (M)	_M(Oxidation (M))PDVGRSM(Oxidation (M))QQL_		M(1)PDVGRSM(1)QQL		M(70)PDVGRSM(70)QQL	0	0	2		nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000427635.6_1_10:69682690-69747802:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.8017578125	2	647.29993	1292.58531	0.16554	0.00010715	-0.03338	-2.1607E-05	0.13216	8.5548E-05	647.3002233069004	29.35	0.63181	29.363	29.113	29.745	0.013474					60	21	4	0	0	0	0.0096108	2	5219	5219;5270		70.496	43.272	1	361500			29765	4821	17244	17245	36585;36586	36585		600;601			-0.04928313290929509
MPDVGRSMQQL	11	2 Oxidation (M)	_M(Oxidation (M))PDVGRSM(Oxidation (M))QQL_		M(1)PDVGRSM(1)QQL		M(80)PDVGRSM(80)QQL	0	0	2		nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000427635.6_1_10:69682690-69747802:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.2999877929688	2	647.29993	1292.58531	0.059251	3.8353E-05	-0.35532	-0.00023	-0.29607	-0.00019164	647.3000470925981	30.004	0.99894	30.029	29.757	30.756	0.02533					70	34	4	0	0	0	0.005006	2	5452	5394;5452		80.24	43.165	1	437920			29766	4821	17244	17245	36587;36588	36588		600;601			-0.04928313290929509
MPERAIKLLAP	11	Unmodified	_MPERAIKLLAP_					0	0	0			REV__ENST00000358127.8_1_9:36840226-36840553:-|nuORF	REV__ENST00000358127.8_1_9:36840226-36840553:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8689575195312	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.749	1	98.749	98.249	99.249	0								0	0	0	0.37609	1	26428	26428		2.4985	1.0166	1		+		29767	20229	17245	17246	36589	36589					0.11231169001871422
MPERLAPRA	9	Unmodified	_MPERLAPRA_					0	0	0			REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF	REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.322021484375	2	520.787118	1039.55968	-0.043319	-2.256E-05	0.039457	2.0549E-05	-0.0038619	-2.0112E-06	520.7870662652496	12.924	0.33928	12.856	12.734	13.073	-0.067496					26	11	3	0	0	0	0.25988	1	240	240		3.9444	0	1	82720	+		29768	16736	17246	17247	36590	36590					0.041486250396019386
MPFDPSKV	8	Oxidation (M)	_M(Oxidation (M))PFDPSKV_		M(1)PFDPSKV		M(72)PFDPSKV	0	0	1		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant;nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.7283630371094	2	468.728403	935.442254	0.2166	0.00010153	-0.083875	-3.9314E-05	0.13272	6.2211E-05	468.7282284878544	37.861	0.50373	37.861	37.56	38.064	0					30	17	2	0	0	0	0.063256	1	7850	7850		71.922	54.98	1	461440			29769	3941	17247	17248	36591	36591		494			-0.02804952619874257
MPFDPSKV	8	Oxidation (M)	_M(Oxidation (M))PFDPSKV_		M(1)PFDPSKV		M(63)PFDPSKV	0	0	1		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant;nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7283630371094	2	468.728403	935.442254	0.15844	7.4266E-05	0.054149	2.5381E-05	0.21259	9.9647E-05	468.7283564534806	37.737	0.57202	37.828	37.555	38.127	0.090881					40	20	3	0	0	0	0.088223	1	7792	7792		62.573	62.573	1	391930			29770	3941	17247	17248	36592	36592		494			-0.02804952619874257
MPFDPSKV	8	Oxidation (M)	_M(Oxidation (M))PFDPSKV_		M(1)PFDPSKV		M(58)PFDPSKV	0	0	1		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant;nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7282409667969	2	468.728403	935.442254	0.24355	0.00011416	-0.36391	-0.00017057	-0.12036	-5.6414E-05	468.7281304649305	38.415	0.74459	38.513	38.093	38.838	0.097527					53	26	3	0	0	0	0.11593	1	8010	8010		57.722	57.722	1	565200			29771	3941	17247	17248	36593	36593		494			-0.02804952619874257
MPFDPSKV	8	Oxidation (M)	_M(Oxidation (M))PFDPSKV_					0	0	1		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant;nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	468.728403	935.442254	-0.16873	-7.9087E-05	0.10156	4.7602E-05	-0.06717	-3.1485E-05	468.72838792096775	38.447	0.83897	38.447	38.064	38.903	0	-0.023517	0.00028861	NaN	57.722	50	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	482510			29772	3941	17247	17248				494			-0.02804952619874257
MPFDPSKV	8	Oxidation (M)	_M(Oxidation (M))PFDPSKV_					0	0	1		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant;nc|ENSG00000136068|O75369-7|FLNB	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	468.728403	935.442254	0.1945	9.1169E-05	-0.043669	-2.0469E-05	0.15083	7.07E-05	468.7283506276701	37.655	0.61666	37.753	37.477	38.093	0.097527	-0.061048	-3.5216E-05	NaN	71.922	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	434920			29773	3941	17247	17248				494			-0.02804952619874257
MPFFAKTV	8	Oxidation (M)	_M(Oxidation (M))PFFAKTV_		M(1)PFFAKTV		M(100)PFFAKTV	0	0	1		ENSG00000137815|ENST00000389629|RTF1	ENSG00000137815|ENST00000389629|RTF1	ENSG00000137815|ENST00000389629|RTF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.74920654296875	2	478.749139	955.483725	0.12126	5.8054E-05	0.3788	0.00018135	0.50007	0.00023941	478.7492155385511	44.017	0.9462	44.017	43.576	44.522	0					92	34	4	0	0	0	0.021656	2	9684	9684;9735		99.799	47.531	1	1923400			29774	4080	17248	17249	36594;36595	36594		517			0.004202281394441343
MPFFAKTV	8	Oxidation (M)	_M(Oxidation (M))PFFAKTV_		M(1)PFFAKTV		M(100)PFFAKTV	0	0	1		ENSG00000137815|ENST00000389629|RTF1	ENSG00000137815|ENST00000389629|RTF1	ENSG00000137815|ENST00000389629|RTF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.749267578125	2	478.749139	955.483725	0.27827	0.00013322	0.10296	4.9294E-05	0.38124	0.00018252	478.7491272063745	43.815	1.1217	43.892	43.401	44.522	0.077515					88	41	3	0	0	0	0.021656	3	9626	9626;9671;9722		99.799	55.941	1	1949200			29775	4080	17248	17249	36596;36597;36598	36596		517			0.004202281394441343
MPFFAKTV	8	Oxidation (M)	_M(Oxidation (M))PFFAKTV_		M(1)PFFAKTV		M(100)PFFAKTV	0	0	1		ENSG00000137815|ENST00000389629|RTF1	ENSG00000137815|ENST00000389629|RTF1	ENSG00000137815|ENST00000389629|RTF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.74920654296875	2	478.749139	955.483725	0.30518	0.00014611	0.019555	9.362E-06	0.32474	0.00015547	478.7491364219624	43.785	1.0172	43.869	43.41	44.427	0.083996					67	37	2	0	0	0	0.021656	2	9661	9609;9661		99.799	59.842	1	1924800			29776	4080	17248	17249	36599;36600	36600		517			0.004202281394441343
MPFKLAQV	8	Oxidation (M)	_M(Oxidation (M))PFKLAQV_		M(1)PFKLAQV		M(48)PFKLAQV	0	0	1		ENSG00000122863|ENST00000373115|CHST3	ENSG00000122863|ENST00000373115|CHST3	ENSG00000122863|ENST00000373115|CHST3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.2622985839844	2	475.262413	948.510274	0.47637	0.0002264	-0.42531	-0.00020213	0.051063	2.4268E-05	475.26213215824447	45.84	0.60788	45.84	45.53	46.138	0					43	21	3	0	0	0	0.16948	1	10262	10262		48.346	23.672	1	283960			29777	3073	17249	17250	36601	36601		383			0.03395917030786677
MPFKLAQV	8	Oxidation (M)	_M(Oxidation (M))PFKLAQV_		M(1)PFKLAQV		M(57)PFKLAQV	0	0	1		ENSG00000122863|ENST00000373115|CHST3	ENSG00000122863|ENST00000373115|CHST3	ENSG00000122863|ENST00000373115|CHST3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.2624206542969	2	475.262413	948.510274	0.31718	0.00015074	-0.11104	-5.2774E-05	0.20614	9.7969E-05	475.2623011541266	45.734	0.62659	45.794	45.389	46.015	0.059834					31	21	2	0	0	0	0.11736	1	10215	10215		57.471	32.797	1	469110			29778	3073	17249	17250	36602	36602		383			0.03395917030786677
MPFKLAQV	8	Oxidation (M)	_M(Oxidation (M))PFKLAQV_		M(1)PFKLAQV		M(51)PFKLAQV	0	0	1		ENSG00000122863|ENST00000373115|CHST3	ENSG00000122863|ENST00000373115|CHST3	ENSG00000122863|ENST00000373115|CHST3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.26239013671875	2	475.262413	948.510274	0.4217	0.00020042	-0.39643	-0.00018841	0.025268	1.2009E-05	475.26216150503427	45.626	0.68773	45.691	45.408	46.096	0.065048					41	24	2	0	0	0	0.15515	1	10242	10242		50.855	26.181	1	360580			29779	3073	17249	17250	36603	36603		383			0.03395917030786677
MPFRGDTVI	9	Oxidation (M)	_M(Oxidation (M))PFRGDTVI_		M(1)PFRGDTVI		M(56)PFRGDTVI	0	0	1		ENST00000571796.5_1_17:80869637-80887508:+|nuORF;nc|ENSG00000141556|Q9BTW9-5|TBCD;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2659912109375	2	526.265684	1050.51682	0.46149	0.00024286	-0.19172	-0.0001009	0.26976	0.00014197	526.2657537961694	41.782	1.5745	41.782	41.355	42.93	0					116	61	3	0	0	0	0.04299	5	9047	8963;9007;9047;9100;9155		55.503	32.95	1	6049700			29780	4393	17250	17251	36604;36605;36606;36607;36608	36606		559			-0.00642189808513649
MPFRGDTVI	9	Oxidation (M)	_M(Oxidation (M))PFRGDTVI_		M(1)PFRGDTVI		M(62)PFRGDTVI	0	0	1		ENST00000571796.5_1_17:80869637-80887508:+|nuORF;nc|ENSG00000141556|Q9BTW9-5|TBCD;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2669677734375	2	526.265684	1050.51682	0.43153	0.0002271	0.57651	0.0003034	1.008	0.0005305	526.2659270453233	41.612	1.5472	41.702	41.162	42.709	0.090248					109	60	3	0	0	0	0.026579	3	8994	8949;8994;9039		61.602	38.866	1	7973000			29781	4393	17250	17251	36609;36610;36611	36610		559			-0.00642189808513649
MPFRGDTVI	9	Oxidation (M)	_M(Oxidation (M))PFRGDTVI_		M(1)PFRGDTVI		M(62)PFRGDTVI	0	0	1		ENST00000571796.5_1_17:80869637-80887508:+|nuORF;nc|ENSG00000141556|Q9BTW9-5|TBCD;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	ENST00000571796.5_1_17:80869637-80887508:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.2664184570312	2	526.265684	1050.51682	0.74234	0.00039067	0.19162	0.00010084	0.93396	0.00049151	526.2658418118821	41.578	1.5451	41.675	41.177	42.723	0.096622					111	58	3	0	0	0	0.026579	3	9010	8919;8963;9010		61.602	35.049	1	6915600			29782	4393	17250	17251	36612;36613;36614	36614		559			-0.00642189808513649
MPGKLGTK	8	Unmodified	_MPGKLGTK_					0	0	0			REV__ENST00000367607.7_2_1:180080953-180081142:+|nuORF	REV__ENST00000367607.7_2_1:180080953-180081142:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5821533203125	2	416.241481	830.468409	0.1081	4.4994E-05	-3.6884	-0.0015353	-3.5803	-0.0014903	416.23971439155497	23.518	0.3869	23.446	23.285	23.672	-0.072559					20	13	2	0	0	0	0.34167	1	3465	3465		11.64	0	1	19833	+		29783	20319	17251	17252	36615	36615					0.04639361342253778
MPHGQLTTI	9	Oxidation (M)	_M(Oxidation (M))PHGQLTTI_		M(1)PHGQLTTI		M(56)PHGQLTTI	0	0	1		ENSG00000198846|ENST00000361421|TOX	ENSG00000198846|ENST00000361421|TOX	ENSG00000198846|ENST00000361421|TOX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2580871582031	2	507.257859	1012.50117	0.17565	8.9098E-05	2.6324	0.0013353	2.808	0.0014244	507.2578663216405	31.636	0.81148	31.636	31.171	31.982	0					74	28	3	0	0	0	0.041175	2	5850	5850;5969		56.177	22.075	1	1075400			29784	8142	17252	17253	36616;36617	36616		886			-0.004584763255479629
MPHGQLTTI	9	Oxidation (M)	_M(Oxidation (M))PHGQLTTI_		M(1)PHGQLTTI		M(56)PHGQLTTI	0	0	1		ENSG00000198846|ENST00000361421|TOX	ENSG00000198846|ENST00000361421|TOX	ENSG00000198846|ENST00000361421|TOX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2582092285156	2	507.257859	1012.50117	0.28223	0.00014316	1.2759	0.00064722	1.5581	0.00079038	507.2578597440696	31.603	0.71406	31.644	31.15	31.864	0.040991					52	25	3	0	0	0	0.041175	2	5828	5828;5931		56.177	22.075	1	1441200			29785	8142	17252	17253	36618;36619	36618		886			-0.004584763255479629
MPHGQLTTI	9	Oxidation (M)	_M(Oxidation (M))PHGQLTTI_					0	0	1		ENSG00000198846|ENST00000361421|TOX	ENSG00000198846|ENST00000361421|TOX	ENSG00000198846|ENST00000361421|TOX	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	507.257859	1012.50117	0.18461	9.3646E-05	5.6379	0.0028599	5.8225	0.0029535	507.2579349166225	31.638	0.78568	31.68	31.183	31.968	0.042364	0.026972	0.0033505	NaN	56.177	43	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1055600			29786	8142	17252	17253				886			-0.004584763255479629
MPHLSMQQV	9	2 Oxidation (M)	_M(Oxidation (M))PHLSM(Oxidation (M))QQV_		M(1)PHLSM(1)QQV		M(79)PHLSM(79)QQV	0	0	2		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.754638671875	2	551.754627	1101.4947	0.01524	8.4087E-06	0.31411	0.00017331	0.32935	0.00018172	551.7546416324599	27.942	0.56877	27.942	27.673	28.241	0					52	19	4	0	0	0	0.010453	1	4804	4804		78.728	52.46	1	502100			29787	4432	17253	17254	36620	36620		560;561			-0.05198737548562349
MPHLSMQQV	9	2 Oxidation (M)	_M(Oxidation (M))PHLSM(Oxidation (M))QQV_		M(1)PHLSM(1)QQV		M(69)PHLSM(69)QQV	0	0	2		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7549438476562	2	551.754627	1101.4947	0.071004	3.9177E-05	0.10356	5.7142E-05	0.17457	9.6319E-05	551.7547835722581	27.935	0.58881	27.931	27.632	28.221	-0.0042572					52	20	4	0	0	0	0.016723	1	4807	4807		69.105	38.468	1	432110			29788	4432	17253	17254	36621	36621		560;561			-0.05198737548562349
MPHLSMQQV	9	2 Oxidation (M)	_M(Oxidation (M))PHLSM(Oxidation (M))QQV_		M(1)PHLSM(1)QQV		M(65)PHLSM(65)QQV	0	0	2		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7548217773438	2	551.754627	1101.4947	0.18353	0.00010126	0.29333	0.00016185	0.47686	0.00026311	551.7548607566276	27.389	0.48322	27.368	27.158	27.641	-0.021412					39	16	3	0	0	0	0.066761	1	4649	4649		65.235	44.82	1	379050			29789	4432	17253	17254	36622	36622		560;561			-0.05198737548562349
MPIIGRKI	8	Oxidation (M)	_M(Oxidation (M))PIIGRKI_		M(1)PIIGRKI		M(42)PIIGRKI	0	0	1		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.29132080078125	2	472.291505	942.568457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.258	1	27.258	26.758	27.758	0								0	0	0	0.21415	1	4601	4601		42.095	13.608	1				29790	6046	17254	17255	36623	36623		708			0.0948759867607123
MPIIGRKI	8	Oxidation (M)	_M(Oxidation (M))PIIGRKI_		M(1)PIIGRKI		M(42)PIIGRKI	0	0	1		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2914733886719	2	472.291505	942.568457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.26	1	27.238	26.738	27.738	-0.021412								0	0	0	0.21415	1	4605	4605		42.095	20.558	1				29791	6046	17254	17255	36624	36624		708			0.0948759867607123
MPIIGRKI	8	Oxidation (M)	_M(Oxidation (M))PIIGRKI_		M(1)PIIGRKI		M(42)PIIGRKI	0	0	1		ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	ENSG00000166224|ENST00000373202|SGPL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2913818359375	2	472.291505	942.568457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.277	1	27.265	26.765	27.765	-0.01156								0	0	0	0.21415	1	4605	4605		42.095	18.946	1				29792	6046	17254	17255	36625	36625		708			0.0948759867607123
MPIKINLI	8	Oxidation (M)	_M(Oxidation (M))PIKINLI_		M(1)PIKINLI		M(82)PIKINLI	0	0	1		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2939453125	2	479.293714	956.572874	0.48174	0.0002309	0.06585	3.1562E-05	0.54759	0.00026246	479.29358264146765	56.449	1.3337	56.449	56.101	57.435	0					133	49	4	0	0	0	0.042326	6	13496	13496;13543;13593;13646;13700;13796		81.864	22.069	1	7643800			29793	3745	17255	17256	36626;36627;36628;36629;36630;36631	36626		468			0.09285063098968749
MPIKINLI	8	Oxidation (M)	_M(Oxidation (M))PIKINLI_		M(1)PIKINLI		M(82)PIKINLI	0	0	1		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2940368652344	2	479.293714	956.572874	0.66563	0.00031903	-0.10354	-4.9625E-05	0.5621	0.00026941	479.29352435984686	56.325	1.3123	56.404	56.085	57.397	0.078671					133	48	4	0	0	0	0.042326	5	13502	13502;13553;13594;13647;13716		81.864	22.069	1	9472500			29794	3745	17255	17256	36632;36633;36634;36635;36636	36632		468			0.09285063098968749
MPIKINLI	8	Oxidation (M)	_M(Oxidation (M))PIKINLI_		M(1)PIKINLI		M(82)PIKINLI	0	0	1		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.29376220703125	2	479.293714	956.572874	0.9	0.00043137	-0.14567	-6.9817E-05	0.75434	0.00036155	479.2934832423958	56.417	1.3344	56.398	56.107	57.441	-0.019081					113	48	3	0	0	0	0.042326	5	13544	13495;13544;13588;13641;13711		81.864	22.069	1	11250000			29795	3745	17255	17256	36637;36638;36639;36640;36641	36638		468			0.09285063098968749
MPILISKI	8	Oxidation (M)	_M(Oxidation (M))PILISKI_		M(1)PILISKI		M(120)PILISKI	0	0	1		ENSG00000101400|ENST00000217381|SNTA1;nc|ENSG00000101400|Q13424-2|SNTA1;ENST00000519177.5_1_8:121583594-121823792:-|nuORF;nc|ENSG00000168807|Q13425-2|SNTB2;ENSG00000168807|ENST00000336278|SNTB2;nc|ENSG00000172164|Q13884-2|SNTB1;ENSG00000172164|ENST00000517992|SNTB1	ENSG00000101400|ENST00000217381|SNTA1;nc|ENSG00000168807|Q13425-2|SNTB2;nc|ENSG00000172164|Q13884-2|SNTB1	nc|ENSG00000172164|Q13884-2|SNTB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7884216308594	2	465.788264	929.561975	0.16173	7.5334E-05	0.51492	0.00023984	0.67665	0.00031518	465.78848603010556	50.194	1.5112	50.194	49.843	51.354	0					138	55	4	0	0	0	0.0070655	3	11618	11618;11669;11722		123.45	34.547	1	11402000			29796	1694;6302;6607	17256	17257	36642;36643;36644	36642		210			0.09437660724677244
MPILISKI	8	Oxidation (M)	_M(Oxidation (M))PILISKI_		M(1)PILISKI		M(110)PILISKI	0	0	1		ENSG00000101400|ENST00000217381|SNTA1;nc|ENSG00000101400|Q13424-2|SNTA1;ENST00000519177.5_1_8:121583594-121823792:-|nuORF;nc|ENSG00000168807|Q13425-2|SNTB2;ENSG00000168807|ENST00000336278|SNTB2;nc|ENSG00000172164|Q13884-2|SNTB1;ENSG00000172164|ENST00000517992|SNTB1	ENSG00000101400|ENST00000217381|SNTA1;nc|ENSG00000168807|Q13425-2|SNTB2;nc|ENSG00000172164|Q13884-2|SNTB1	nc|ENSG00000172164|Q13884-2|SNTB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7884216308594	2	465.788264	929.561975	0.50162	0.00023365	0.1032	4.8068E-05	0.60481	0.00028172	465.7883053578937	50.194	1.7164	50.239	49.877	51.593	0.044891					157	63	5	0	0	0	0.013309	2	11618	11618;11668		111.29	31.718	1	11946000			29797	1694;6302;6607	17256	17257	36645;36646	36645		210			0.09437660724677244
MPILISKI	8	Oxidation (M)	_M(Oxidation (M))PILISKI_		M(1)PILISKI		M(110)PILISKI	0	0	1		ENSG00000101400|ENST00000217381|SNTA1;nc|ENSG00000101400|Q13424-2|SNTA1;ENST00000519177.5_1_8:121583594-121823792:-|nuORF;nc|ENSG00000168807|Q13425-2|SNTB2;ENSG00000168807|ENST00000336278|SNTB2;nc|ENSG00000172164|Q13884-2|SNTB1;ENSG00000172164|ENST00000517992|SNTB1	ENSG00000101400|ENST00000217381|SNTA1;nc|ENSG00000168807|Q13425-2|SNTB2;nc|ENSG00000172164|Q13884-2|SNTB1	nc|ENSG00000172164|Q13884-2|SNTB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.78826904296875	2	465.788264	929.561975	0.6821	0.00031772	-0.13965	-6.5047E-05	0.54245	0.00025267	465.78822231789815	50.217	1.641	50.238	49.876	51.517	0.020691					171	61	5	0	0	0	0.013309	2	11598	11598;11646		111.29	33.138	1	12099000			29798	1694;6302;6607	17256	17257	36647;36648	36647		210			0.09437660724677244
MPIQSHVI	8	Oxidation (M)	_M(Oxidation (M))PIQSHVI_		M(1)PIQSHVI		M(46)PIQSHVI	0	0	1		ENST00000546661.1_1_12:53910923-53918651:-|nuORF;nc|ENSG00000170653|P17544-4|ATF7;nc|ENSG00000170653|P17544-2|ATF7;nc|ENSG00000170653|P17544-3|ATF7;ENSG00000170653|ENST00000420353|ATF7;nc|ENSG00000170653|P17544-1|ATF7	ENST00000546661.1_1_12:53910923-53918651:-|nuORF	ENST00000546661.1_1_12:53910923-53918651:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.74969482421875	2	470.74967	939.484787	-0.11441	-5.3859E-05	2.7984	0.0013173	2.684	0.0012635	470.75132763638067	31.595	0.6557	31.595	31.144	31.8	0					43	23	4	0	0	0	0.18275	1	5889	5889		46.021	6.0636	1	378540			29799	6472	17257	17258	36649	36649		755			0.012624425083572532
MPIQSHVI	8	Oxidation (M)	_M(Oxidation (M))PIQSHVI_		M(1)PIQSHVI		M(50)PIQSHVI	0	0	1		ENST00000546661.1_1_12:53910923-53918651:-|nuORF;nc|ENSG00000170653|P17544-4|ATF7;nc|ENSG00000170653|P17544-2|ATF7;nc|ENSG00000170653|P17544-3|ATF7;ENSG00000170653|ENST00000420353|ATF7;nc|ENSG00000170653|P17544-1|ATF7	ENST00000546661.1_1_12:53910923-53918651:-|nuORF	ENST00000546661.1_1_12:53910923-53918651:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.74945068359375	2	470.74967	939.484787	-0.053373	-2.5125E-05	2.1034	0.00099019	2.0501	0.00096506	470.75083188268036	31.499	0.75156	31.542	31.13	31.882	0.042364					44	26	3	0	0	0	0.16041	1	5871	5871		49.933	6.0747	1	275510			29800	6472	17257	17258	36650	36650		755			0.012624425083572532
MPIQSHVI	8	Oxidation (M)	_M(Oxidation (M))PIQSHVI_		M(1)PIQSHVI		M(68)PIQSHVI	0	0	1		ENST00000546661.1_1_12:53910923-53918651:-|nuORF;nc|ENSG00000170653|P17544-4|ATF7;nc|ENSG00000170653|P17544-2|ATF7;nc|ENSG00000170653|P17544-3|ATF7;ENSG00000170653|ENST00000420353|ATF7;nc|ENSG00000170653|P17544-1|ATF7	ENST00000546661.1_1_12:53910923-53918651:-|nuORF	ENST00000546661.1_1_12:53910923-53918651:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.7496643066406	2	470.74967	939.484787	0.19341	9.1048E-05	1.5933	0.00075007	1.7868	0.00084112	470.7508488910333	31.349	0.71406	31.39	31.15	31.864	0.040991					42	25	3	0	0	0	0.071344	1	5852	5852		68.081	6.7232	1	224420			29801	6472	17257	17258	36651	36651		755			0.012624425083572532
MPISLQQI	8	Oxidation (M)	_M(Oxidation (M))PISLQQI_		M(1)PISLQQI		M(71)PISLQQI	0	0	1		ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;PBRM1|p.V1336Sfs*48|1|0.44|ENSG00000163939|chr3:52563363-52563363|C/-|frameshift_variant;PBRM1|p.L1349Wfs*35|1|0.38|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;PBRM1|p.P1339Lfs*45|1|0.24|ENSG00000163939|chr3:52563353-52563353|G/-|frameshift_variant;PBRM1|p.Q1346Rfs*38|1|0.15|ENSG00000163939|chr3:52563332-52563332|T/-|frameshift_variant;PBRM1|p.D1403Lfs*18|1|0.2|ENSG00000163939|chr3:52561847-52561848|TC/-|frameshift_variant;PBRM1|p.P1491Rfs*48|1|0.62|ENSG00000163939|chr3:52554861-52554861|G/-|frameshift_variant;PBRM1|p.V1505Lfs*34|1|0.32|ENSG00000163939|chr3:52554823-52554823|G/-|frameshift_variant;PBRM1|p.P1534Hfs*5|1|0.44|ENSG00000163939|chr3:52554732-52554732|G/-|frameshift_variant;PBRM1|p.Q1511Sfs*28|1|0.49|ENSG00000163939|chr3:52554802-52554802|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.L1564Wfs*32|1|0.68|ENSG00000163939|chr3:52550627-52550627|A/-|frameshift_variant;PBRM1|p.F1594Lfs*2|1|0.68|ENSG00000163939|chr3:52550536-52550536|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-9|PBRM1;PBRM1|p.Q1560Nfs*37|1|0.46|ENSG00000163939|chr3:52550749-52550750|-/TT|frameshift_variant;PBRM1|p.S1607Qfs*5|1|0.34|ENSG00000163939|chr3:52550499-52550499|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;PBRM1|p.F1216Yfs*3|1|0.2|ENSG00000163939|chr3:52576585-52576586|-/AT|frameshift_variant;PBRM1|p.K1293Nfs*20|1|0.2|ENSG00000163939|chr3:52563490-52563490|T/-|frameshift_variant;PBRM1|p.V1235Cfs*34|1|0.23|ENSG00000163939|chr3:52564222-52564222|C/-|frameshift_variant;PBRM1|p.E1222Kfs*5|2|0.51|ENSG00000163939|chr3:52576568-52576568|C/-|frameshift_variant;PBRM1|p.E1214Rfs*6|1|0.35|ENSG00000163939|chr3:52576592-52576593|-/T|frameshift_variant;PBRM1|p.I1197Ffs*21|1|0.4|ENSG00000163939|chr3:52576643-52576643|T/-|frameshift_variant;PBRM1|p.I1073Lfs*86|1|0.27|ENSG00000163939|chr3:52586595-52586595|T/-|frameshift_variant;PBRM1|p.M1038Sfs*121|1|0.03|ENSG00000163939|chr3:52587363-52587363|A/-|frameshift_variant;PBRM1|p.P1135Lfs*24|1|0.12|ENSG00000163939|chr3:52579183-52579183|G/-|frameshift_variant;PBRM1|p.N1126Gfs*15|1|0.24|ENSG00000163939|chr3:52586432-52586436|AAGTT/-|frameshift_variant;PBRM1|p.A1104Gfs*3|1|0.37|ENSG00000163939|chr3:52586501-52586502|-/C|frameshift_variant;PBRM1|p.K991Nfs*23|1|0.4|ENSG00000163939|chr3:52587503-52587503|T/-|frameshift_variant;PBRM1|p.L993Mfs*20|1|0.61|ENSG00000163939|chr3:52587496-52587499|ACAA/-|frameshift_variant;PBRM1|p.W992Mfs*12|1|0.27|ENSG00000163939|chr3:52587502-52587503|-/T|frameshift_variant;PBRM1|p.K909Nfs*6|1|0.29|ENSG00000163939|chr3:52603573-52603573|T/-|frameshift_variant;PBRM1|p.G1161Afs*57|1|0.31|ENSG00000163939|chr3:52579107-52579107|A/-|frameshift_variant;PBRM1|p.N832Ifs*23|1|0.36|ENSG00000163939|chr3:52609385-52609385|T/-|frameshift_variant;PBRM1|p.R836Lfs*12|1|0.26|ENSG00000163939|chr3:52609352-52609373|TGCTCTTGAAATAAATCAAGCC/-|frameshift_variant;nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.Q869Sfs*6|1|0.26|ENSG00000163939|chr3:52603695-52603696|-/A|frameshift_variant;PBRM1|p.Y862*|1|0.5|ENSG00000163939|chr3:52603672-52603715|ACGAATTTTAATAAAAAACTGCTGAAGTTCTACTGCATCTTCAT/-|frameshift_variant;PBRM1|p.D748Mfs*27|2|0.36|ENSG00000163939|chr3:52609638-52609638|C/-|frameshift_variant;PBRM1|p.Y697*|1|0.43|ENSG00000163939|chr3:52609782-52609792|TAGTCAGATAG/-|frameshift_variant;PBRM1|p.N663Mfs*7|1|0.47|ENSG00000163939|chr3:52609892-52609892|T/-|frameshift_variant;PBRM1|p.K638Nfs*4|1|0.35|ENSG00000163939|chr3:52615361-52615361|T/-|frameshift_variant;PBRM1|p.E572*|1|0.4|ENSG00000163939|chr3:52617366-52617367|-/A|frameshift_variant;PBRM1|p.L448Wfs*5|1|0.32|ENSG00000163939|chr3:52628994-52628994|A/-|frameshift_variant;PBRM1|p.N517Hfs*15|1|0.6|ENSG00000163939|chr3:52617531-52617532|TC/-|frameshift_variant;PBRM1|p.I571Mfs*16|1|0.4|ENSG00000163939|chr3:52617367-52617367|A/-|frameshift_variant;PBRM1|p.Y600Ifs*42|1|0.42|ENSG00000163939|chr3:52617283-52617283|G/-|frameshift_variant;PBRM1|p.L617Ffs*25|1|0.47|ENSG00000163939|chr3:52615424-52615424|T/-|frameshift_variant	ENSG00000163939|ENST00000707071|PBRM1	ENSG00000163939|ENST00000707071|PBRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.25726318359375	2	473.257328	944.500103	0.14096	6.6711E-05	-0.022564	-1.0678E-05	0.1184	5.6033E-05	473.2572049585754	57.677	0.75006	57.66	57.416	58.166	-0.017197					47	27	2	0	0	0	0.064917	1	13931	13931		71.134	20.279	1	708360			29802	5762	17258	17259	36652	36652		684			0.025633093055489553
MPKIKMPKI	9	2 Oxidation (M)	_M(Oxidation (M))PKIKM(Oxidation (M))PKI_		M(1)PKIKM(1)PKI		M(46)PKIKM(46)PKI	0	0	2		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.3270874023438	2	559.32723	1116.63991	0.34311	0.00019191	-0.35484	-0.00019847	-0.011732	-6.5617E-06	559.3271441704976	24.483	1.0304	24.41	24.055	25.086	-0.072559					87	35	4	0	0	0	0.069366	1	3766	3766		45.7	16.618	1	342370			29803	3189	17259	17260	36653	36653		407;408			0.08625350318425262
MPKIKMPKI	9	2 Oxidation (M)	_M(Oxidation (M))PKIKM(Oxidation (M))PKI_		M(1)PKIKM(1)PKI		M(42)PKIKM(42)PKI	0	0	2		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.32763671875	2	559.32723	1116.63991	-0.091846	-5.1372E-05	0.16897	9.4512E-05	0.077129	4.314E-05	559.3273075676295	24.949	0.55553	24.918	24.681	25.237	-0.03141					34	18	2	0	0	0	0.079752	1	3925	3925		41.84	11.203	1	216230			29804	3189	17259	17260	36654	36654		407;408			0.08625350318425262
MPKIYLPL	8	Unmodified	_MPKIYLPL_					0	0	0		ENST00000428888.1_1_2:166702523-166702559:-|nuORF	ENST00000428888.1_1_2:166702523-166702559:-|nuORF	ENST00000428888.1_1_2:166702523-166702559:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7906494140625	2	487.790807	973.56706	0.52848	0.00025779	0.50437	0.00024603	1.0329	0.00050382	487.79061877970537	77.182	2.5993	77.182	76.812	79.411	0					166	100	3	0	0	0	0.42758	1	19871	19871		13.508	2.3934	1	892270			29805	10444	17260	17261	36655	36655					0.07921964587308139
MPKIYLPL	8	Unmodified	_MPKIYLPL_					0	0	0		ENST00000428888.1_1_2:166702523-166702559:-|nuORF	ENST00000428888.1_1_2:166702523-166702559:-|nuORF	ENST00000428888.1_1_2:166702523-166702559:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7906188964844	2	487.790807	973.56706	0.48192	0.00023507	0.20632	0.00010064	0.68824	0.00033572	487.7906405324573	77.186	2.3134	77.241	76.862	79.176	0.055412					149	86	3	0	0	0	0.42758	1	19856	19856		13.508	2.3934	1	906850			29806	10444	17260	17261	36656	36656					0.07921964587308139
MPKIYLPL	8	Unmodified	_MPKIYLPL_					0	0	0		ENST00000428888.1_1_2:166702523-166702559:-|nuORF	ENST00000428888.1_1_2:166702523-166702559:-|nuORF	ENST00000428888.1_1_2:166702523-166702559:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	487.790807	973.56706	0.48192	0.00023507	0.20632	0.00010064	0.68824	0.00033572	487.7906405324573	77.186	2.3134	77.241	76.862	79.176	0.055412	0.024918	-0.00010404	NaN	13.508	149	86	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	906850			29807	10444	17260	17261							0.07921964587308139
MPKIYLPL	8	Unmodified	_MPKIYLPL_					0	0	0		ENST00000428888.1_1_2:166702523-166702559:-|nuORF	ENST00000428888.1_1_2:166702523-166702559:-|nuORF	ENST00000428888.1_1_2:166702523-166702559:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	487.790807	973.56706	0.69226	0.00033768	0.16098	7.8526E-05	0.85324	0.0004162	487.7905652959238	77.257	1.5687	77.225	76.829	78.397	-0.031334	0.0091913	-0.00014827	NaN	13.508	123	57	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	901770			29808	10444	17260	17261							0.07921964587308139
MPKKLYIIFI	10	Unmodified	_MPKKLYIIFI_					0	0	0			REV__ENST00000480294.1_1_6:10891760-10930631:+|nuORF	REV__ENST00000480294.1_1_6:10891760-10930631:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3873901367188	2	633.388145	1264.76174	-0.060202	-3.8131E-05	-0.33913	-0.0002148	-0.39933	-0.00025293	633.8903085259533	104.58	0.56749	104.58	104.34	104.91	0					120	79	2	0	0	0	0.41085	1	27750	27750		1.4819	0.95714	1	156630	+		29809	16612	17261	17262	36657	36657					0.13994715672424718
MPLGHIMRL	9	2 Oxidation (M)	_M(Oxidation (M))PLGHIM(Oxidation (M))RL_		M(1)PLGHIM(1)RL		M(93)PLGHIM(93)RL	0	0	2		ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2915649414062	2	550.291179	1098.56781	0.55516	0.0003055	0.64607	0.00035553	1.2012	0.00066103	550.2916374766619	32.593	2.0387	32.593	31.8	33.839	0					220	72	5	0	0	0	0.0041925	6	6236	6147;6196;6236;6282;6325;6371		92.822	62.186	1	3920300			29810	3429	17262	17263	36658;36659;36660;36661;36662;36663	36660		432;433			0.022464359647301535
MPLGHIMRL	9	2 Oxidation (M)	_M(Oxidation (M))PLGHIM(Oxidation (M))RL_		M(1)PLGHIM(1)RL		M(82)PLGHIM(82)RL	0	0	2		ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2916259765625	2	550.291179	1098.56781	0.66509	0.00036599	0.42261	0.00023256	1.0877	0.00059855	550.2915460716258	32.463	1.9126	32.518	31.836	33.749	0.055309					207	68	5	0	0	0	0.0085732	6	6223	6124;6174;6223;6268;6319;6371		81.613	50.345	1	4643900			29811	3429	17262	17263	36664;36665;36666;36667;36668;36669	36666		432;433			0.022464359647301535
MPLGHIMRL	9	2 Oxidation (M)	_M(Oxidation (M))PLGHIM(Oxidation (M))RL_		M(1)PLGHIM(1)RL		M(97)PLGHIM(97)RL	0	0	2		ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2915649414062	2	550.291179	1098.56781	0.44106	0.00024271	0.59836	0.00032927	1.0394	0.00057198	550.2916854403506	32.534	1.9963	32.588	31.815	33.811	0.054371					204	71	5	0	0	0	0.0036555	5	6223	6125;6175;6223;6272;6315		97.075	64.769	1	4510900			29812	3429	17262	17263	36670;36671;36672;36673;36674	36672		432;433			0.022464359647301535
MPLLRQEEL	9	Oxidation (M)	_M(Oxidation (M))PLLRQEEL_		M(1)PLLRQEEL		M(120)PLLRQEEL	0	0	1		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.805419921875	2	572.805174	1143.59579	0.21657	0.00012405	0.01054	6.0372E-06	0.22711	0.00013009	572.8051360530375	43.276	1.0358	43.276	42.842	43.878	0					113	37	5	0	0	0	0.0010463	2	9478	9478;9526		122.18	66.002	1	2013700			29813	530	17263	17264	36675;36676	36675		59			0.029740374257926305
MPLLRQEEL	9	Oxidation (M)	_M(Oxidation (M))PLLRQEEL_		M(1)PLLRQEEL		M(110)PLLRQEEL	0	0	1		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.8052368164062	2	572.805174	1143.59579	0.4219	0.00024166	-0.13892	-7.9576E-05	0.28297	0.00016209	572.8050197444904	43.02	1.0132	43.105	42.731	43.744	0.085197					92	36	3	0	0	0	0.0019475	3	9387	9387;9438;9525		110.67	63.754	1	2205900			29814	530	17263	17264	36677;36678;36679	36677		59			0.029740374257926305
MPLLRQEEL	9	Oxidation (M)	_M(Oxidation (M))PLLRQEEL_		M(1)PLLRQEEL		M(130)PLLRQEEL	0	0	1		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.8052978515625	2	572.805174	1143.59579	0.082052	4.7E-05	0.23051	0.00013204	0.31256	0.00017904	572.8051732019	43.003	1.1902	43.094	42.633	43.823	0.091362					115	43	5	0	0	0	0.00014042	3	9363	9363;9412;9475		134.3	87.375	1	2193300			29815	530	17263	17264	36680;36681;36682	36680		59			0.029740374257926305
MPLLTPRYI	9	Oxidation (M)	_M(Oxidation (M))PLLTPRYI_		M(1)PLLTPRYI		M(44)PLLTPRYI	0	0	1		ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3150634765625	2	560.315177	1118.6158	0.63285	0.00035459	-0.77256	-0.00043288	-0.13972	-7.8286E-05	560.3147245137873	54.642	0.71692	54.705	54.272	54.989	0.063202					47	26	2	0	0	0	0.074552	1	13014	13014		43.772	21.036	1	934550			29816	2779	17264	17265	36683	36683		351			0.06123833156402725
MPLLTPRYI	9	Oxidation (M)	_M(Oxidation (M))PLLTPRYI_		M(1)PLLTPRYI		M(44)PLLTPRYI	0	0	1		ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7404174804688	2	560.315177	1118.6158	0.57349	0.00032133	-0.42108	-0.00023594	0.15241	8.5397E-05	560.3150229807841	54.709	0.69627	54.693	54.31	55.006	-0.015923					55	24	3	0	0	0	0.14646	1	13022	13022		43.772	21.036	1	986510			29817	2779	17264	17265	36684	36684		351			0.06123833156402725
MPLLTPRYI	9	Oxidation (M)	_M(Oxidation (M))PLLTPRYI_					0	0	1		ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	ENSG00000117153|ENST00000367261|KLHL12	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.315177	1118.6158	0.6386	0.00035782	-0.70751	-0.00039643	-0.068912	-3.8612E-05	560.3147225199896	54.632	0.6478	54.632	54.296	54.943	0	-0.044658	-5.1291E-05	NaN	43.772	44	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	872360			29818	2779	17264	17265				351			0.06123833156402725
MPLSTIREV	9	Oxidation (M)	_M(Oxidation (M))PLSTIREV_		M(1)PLSTIREV		M(76)PLSTIREV	0	0	1		ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2862548828125	2	531.286617	1060.55868	0.14224	7.5569E-05	1.0549	0.00056045	1.1971	0.00063602	531.2868395003554	39.374	1.0389	39.374	38.903	39.942	0					84	37	3	0	0	0	0.01251	3	8227	8227;8275;8326		75.571	41.169	1	773220			29819	2027	17265	17266	36685;36686;36687	36685		249			0.03082365880004545
MPLSTIREV	9	Oxidation (M)	_M(Oxidation (M))PLSTIREV_		M(1)PLSTIREV		M(72)PLSTIREV	0	0	1		ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2870483398438	2	531.286617	1060.55868	0.22103	0.00011743	0.80749	0.00042901	1.0285	0.00054644	531.286855840785	39.288	0.74621	39.38	38.944	39.69	0.09267					65	26	3	0	0	0	0.015027	3	8252	8199;8252;8301		71.708	37.605	1	800090			29820	2027	17265	17266	36688;36689;36690	36689		249			0.03082365880004545
MPLSTIREV	9	Oxidation (M)	_M(Oxidation (M))PLSTIREV_		M(1)PLSTIREV		M(63)PLSTIREV	0	0	1		ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.28662109375	2	531.286617	1060.55868	0.5702	0.00030294	0.4979	0.00026453	1.0681	0.00056747	531.286701412212	39.285	0.9185	39.384	38.869	39.788	0.099403					72	32	3	0	0	0	0.022205	2	8237	8184;8237		63.227	36.344	1	1061000			29821	2027	17265	17266	36691;36692	36692		249			0.03082365880004545
MPMISIPRV	9	2 Oxidation (M)	_M(Oxidation (M))PM(Oxidation (M))ISIPRV_		M(1)PM(1)ISIPRV		M(42)PM(42)ISIPRV	0	0	2		nc|ENSG00000117598|Q32ZL2-2|PLPPR5;chr1:98893104-98914801|372|15.53|0.84|4.22|-|ENST00000370188|PLPPR5,PLPPR5;ENSG00000117598|ENST00000263177|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8031616210938	2	538.285563	1074.55657	0.63495	0.00034179	-0.12988	-6.9914E-05	0.50507	0.00027187	538.2853050162217	53.519	0.85291	53.519	53.173	54.026	0					49	31	2	0	0	0	0.07944	1	12613	12613		41.956	24.843	1	497090			29822	114	17266	17267	36693	36693		8;9			0.022276138705819903
MPMISIPRV	9	2 Oxidation (M)	_M(Oxidation (M))PM(Oxidation (M))ISIPRV_		M(1)PM(1)ISIPRV		M(40)PM(40)ISIPRV	0	0	2		nc|ENSG00000117598|Q32ZL2-2|PLPPR5;chr1:98893104-98914801|372|15.53|0.84|4.22|-|ENST00000370188|PLPPR5,PLPPR5;ENSG00000117598|ENST00000263177|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8034057617188	2	538.285563	1074.55657	0.60258	0.00032436	-0.32626	-0.00017562	0.27632	0.00014874	538.2853947787493	53.655	0.70366	53.646	53.305	54.008	-0.0096054					51	26	3	0	0	0	0.086462	1	12621	12621		40.239	18.702	1	868200			29823	114	17266	17267	36694	36694		8;9			0.022276138705819903
MPMNVADLI	9	2 Oxidation (M)	_M(Oxidation (M))PM(Oxidation (M))NVADLI_		M(1)PM(1)NVADLI		M(72)PM(72)NVADLI	0	0	2		nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000141543|ENST00000649764|EIF4A3	nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000141543|ENST00000649764|EIF4A3	nc|ENSG00000156976|Q14240-2|EIF4A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2465209960938	2	518.246103	1034.47765	0.2521	0.00013065	0.27629	0.00014319	0.52839	0.00027384	518.2465869402477	61.39	2.3532	61.39	60.764	63.117	0					260	87	5	0	0	0	0.014888	1	14969	14969		71.922	7.686	1	29650000			29824	5273;4391	17267	17268	36695	36695		557;558			-0.0382065815435908
MPMNVADLI	9	2 Oxidation (M)	_M(Oxidation (M))PM(Oxidation (M))NVADLI_		M(1)PM(1)NVADLI		M(92)PM(92)NVADLI	0	0	2		nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000141543|ENST00000649764|EIF4A3	nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000141543|ENST00000649764|EIF4A3	nc|ENSG00000156976|Q14240-2|EIF4A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.246826171875	2	518.246103	1034.47765	0.11178	5.7932E-05	0.3998	0.00020719	0.51158	0.00026513	518.2466149611879	61.268	2.3159	61.365	60.752	63.068	0.096985					249	84	5	0	0	0	0.0042343	1	15046	15046		92.491	18.069	1	31549000			29825	5273;4391	17267	17268	36696	36696		557;558			-0.0382065815435908
MPMNVADLI	9	2 Oxidation (M)	_M(Oxidation (M))PM(Oxidation (M))NVADLI_		M(1)PM(1)NVADLI		M(82)PM(82)NVADLI	0	0	2		nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000141543|ENST00000649764|EIF4A3	nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000141543|ENST00000649764|EIF4A3	nc|ENSG00000156976|Q14240-2|EIF4A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.246337890625	2	518.246103	1034.47765	0.14058	7.2854E-05	0.38911	0.00020166	0.52969	0.00027451	518.2466142605066	61.338	2.3151	61.328	60.735	63.05	-0.0094528					243	85	4	0	0	0	0.0083926	2	14987	14987;15032		81.89	17.654	1	32267000			29826	5273;4391	17267	17268	36697;36698	36697		557;558			-0.0382065815435908
MPMRPLLV	8	Unmodified	_MPMRPLLV_					0	0	0			REV__ENST00000318430.9_1_17:76134666-76137438:+|nuORF	REV__ENST00000318430.9_1_17:76134666-76137438:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.31866455078125	2	478.774634	955.534715	0.35472	0.00016983	-1.4409	-0.00068986	-1.0862	-0.00052003	478.7738423781799	63.419	0.45313	63.515	63.228	63.681	0.095722					25	15	2	0	0	0	0.34092	1	15639	15639		13.508	0	1	268510	+		29827	19949	17268	17269	36699	36699					0.055168539126611904
MPNYLLSSF	9	Unmodified	_MPNYLLSSF_					0	0	0			REV__ENST00000476385.1_1_3:142660339-142660513:+|nuORF	REV__ENST00000476385.1_1_3:142660339-142660513:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7394409179688	2	536.26261	1070.51067	0.28307	0.0001518	-2.1719	-0.0011647	-1.8889	-0.0010129	536.2610181800311	61.27	0.28148	61.27	61.155	61.437	0					16	10	2	0	0	0	0.24688	1	15035	15035		14.838	1.3304	1	293370	+		29828	21423	17269	17270	36700	36700					-0.021767080400195482
MPPAIPLMPF	10	Unmodified	_MPPAIPLMPF_					0	0	0			REV__ENST00000528175.1_1_8:144803765-144804224:+|nuORF	REV__ENST00000528175.1_1_8:144803765-144804224:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2930297851562	2	557.295399	1112.57624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.482	1	94.48	93.98	94.98	-0.0020142								0	0	0	0.35542	1	25204	25204		12.532	3.1841	1		+		29829	21984	17270	17271	36701	36701					0.024459898813120162
MPPLNTQRI	9	Oxidation (M)	_M(Oxidation (M))PPLNTQRI_		M(1)PPLNTQRI		M(58)PPLNTQRI	0	0	1		nc|ENSG00000068305|Q02078-8|MEF2A;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A	nc|ENSG00000068305|Q02078-8|MEF2A	nc|ENSG00000068305|Q02078-8|MEF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2927856445312	2	543.292233	1084.56991	0.89996	0.00048894	0.95382	0.0005182	1.8538	0.0010071	543.292642620426	33.837	1.2708	33.903	33.405	34.676	0.06636					128	45	4	0	0	0	0.037019	1	6674	6674		57.722	21.595	1	657760			29830	12583	17271	17272	36702	36702		965			0.031011879741527082
MPPLNTQRI	9	Oxidation (M)	_M(Oxidation (M))PPLNTQRI_		M(1)PPLNTQRI		M(63)PPLNTQRI	0	0	1		nc|ENSG00000068305|Q02078-8|MEF2A;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A	nc|ENSG00000068305|Q02078-8|MEF2A	nc|ENSG00000068305|Q02078-8|MEF2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3163452148438	2	543.292233	1084.56991	0.43243	0.00023494	1.2949	0.0007035	1.7273	0.00093844	543.2928557353872	33.856	1.0812	33.923	33.469	34.55	0.066704					117	38	4	0	0	0	0.075169	1	6571	6571		62.573	24.397	1	634750			29831	12583	17271	17272	36703	36703		965			0.031011879741527082
MPPLVIKV	8	Oxidation (M)	_M(Oxidation (M))PPLVIKV_		M(1)PPLVIKV		M(71)PPLVIKV	0	0	1		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7829284667969	2	456.782982	911.55141	0.55114	0.00025175	-0.2515	-0.00011488	0.29964	0.00013687	456.78275928879845	50.611	0.55128	50.611	50.267	50.818	0					68	19	4	0	0	0	0.065797	2	11719	11719;11768		70.716	70.716	1	7438700			29832	4119	17272	17273	36704;36705	36704		529			0.09209678070260452
MPPLVIKV	8	Oxidation (M)	_M(Oxidation (M))PPLVIKV_		M(1)PPLVIKV		M(94)PPLVIKV	0	0	1		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7831726074219	2	456.782982	911.55141	0.36216	0.00016543	0.20198	9.2263E-05	0.56414	0.00025769	456.7830383347182	51.015	1.5321	51.015	50.792	52.324	0					155	56	5	0	0	0	0.026049	2	11858	11858;11907		93.883	61.43	1	11639000			29833	4119	17272	17273	36706;36707	36706		529			0.09209678070260452
MPPLVIKV	8	Oxidation (M)	_M(Oxidation (M))PPLVIKV_		M(1)PPLVIKV		M(82)PPLVIKV	0	0	1		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7830505371094	2	456.782982	911.55141	0.68159	0.00031134	-0.49257	-0.000225	0.18902	8.634E-05	456.78267433668555	50.581	0.74455	50.626	50.318	51.063	0.044891					74	26	4	0	0	0	0.042326	2	11762	11714;11762		81.864	62.425	1	7182500			29834	4119	17272	17273	36708;36709	36709		529			0.09209678070260452
MPPLVIKV	8	Oxidation (M)	_M(Oxidation (M))PPLVIKV_		M(1)PPLVIKV		M(82)PPLVIKV	0	0	1		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7832336425781	2	456.782982	911.55141	0.27405	0.00012518	0.24177	0.00011044	0.51581	0.00023561	456.78304871490667	51.02	1.727	51.067	50.848	52.575	0.046574					136	63	4	0	0	0	0.042326	3	11844	11844;11893;12015		81.864	49.41	1	11133000			29835	4119	17272	17273	36710;36711;36712	36710		529			0.09209678070260452
MPPLVIKV	8	Oxidation (M)	_M(Oxidation (M))PPLVIKV_		M(1)PPLVIKV		M(82)PPLVIKV	0	0	1		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7829284667969	2	456.782982	911.55141	0.76199	0.00034807	-0.64942	-0.00029665	0.11257	5.142E-05	456.7826381266504	50.611	0.59077	50.632	50.281	50.872	0.020691					86	21	6	0	0	0	0.042326	2	11713	11713;11762		81.864	62.425	1	8049200			29836	4119	17272	17273	36713;36714	36713		529			0.09209678070260452
MPPLVIKV	8	Oxidation (M)	_M(Oxidation (M))PPLVIKV_		M(1)PPLVIKV		M(82)PPLVIKV	0	0	1		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7831726074219	2	456.782982	911.55141	0.35762	0.00016335	0.17011	7.7703E-05	0.52773	0.00024106	456.7830508506524	51.043	1.8044	51.052	50.701	52.506	0.0095634					195	67	5	0	0	0	0.042326	2	11843	11843;11891		81.864	57.654	1	11073000			29837	4119	17272	17273	36715;36716	36715		529			0.09209678070260452
MPPPPPQGV	9	Oxidation (M)	_M(Oxidation (M))PPPPPQGV_		M(1)PPPPPQGV		M(71)PPPPPQGV	0	0	1		ENSG00000164754|ENST00000297338|RAD21;ENST00000523986.5_1_8:117864120-117864294:-|nuORF	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.2370300292969	2	468.236396	934.458238	-0.23521	-0.00011013	0.59722	0.00027964	0.36201	0.00016951	468.23657706001393	34.148	2.1517	34.148	33.484	35.635	0					170	77	3	0	0	0	0.015674	4	6635	6635;6835;6885;6965		70.716	40.491	1	833860			29838	5874	17273	17274	36717;36718;36719;36720	36717		695			-0.011612463829692388
MPPPPPQGV	9	Oxidation (M)	_M(Oxidation (M))PPPPPQGV_		M(1)PPPPPQGV		M(78)PPPPPQGV	0	0	1		ENSG00000164754|ENST00000297338|RAD21;ENST00000523986.5_1_8:117864120-117864294:-|nuORF	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2369384765625	2	468.236396	934.458238	-0.19109	-8.9477E-05	0.42084	0.00019705	0.22975	0.00010758	468.2364753541182	34.104	2.4536	34.17	33.51	35.964	0.06636					196	88	3	0	0	0	0.010938	5	6610	6610;6759;6810;6861;6920		77.984	47.76	1	860130			29839	5874	17273	17274	36721;36722;36723;36724;36725	36721		695			-0.011612463829692388
MPPPPPQGV	9	Oxidation (M)	_M(Oxidation (M))PPPPPQGV_		M(1)PPPPPQGV		M(71)PPPPPQGV	0	0	1		ENSG00000164754|ENST00000297338|RAD21;ENST00000523986.5_1_8:117864120-117864294:-|nuORF	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.2371520996094	2	468.236396	934.458238	-0.11961	-5.6006E-05	0.46308	0.00021683	0.34347	0.00016083	468.2364695692855	34.137	2.4975	34.203	33.441	35.939	0.0667					191	89	3	0	0	0	0.015674	4	6586	6586;6729;6782;6836		70.716	40.491	1	986510			29840	5874	17273	17274	36726;36727;36728;36729	36726		695			-0.011612463829692388
MPRGVVVTL	9	Oxidation (M)	_M(Oxidation (M))PRGVVVTL_		M(1)PRGVVVTL		M(65)PRGVVVTL	0	0	1		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.28668212890625	2	494.28642	986.558287	0.40653	0.00020094	0.3172	0.00015679	0.72373	0.00035773	494.2865426257405	44.247	2.3145	44.247	43.63	45.945	0					141	84	2	0	0	0	0.019245	3	9775	9674;9723;9775		65.235	24.786	1	10298000			29841	1420	17274	17275	36730;36731;36732	36732		175			0.06446990950826148
MPRGVVVTL	9	Oxidation (M)	_M(Oxidation (M))PRGVVVTL_		M(1)PRGVVVTL		M(65)PRGVVVTL	0	0	1		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.286865234375	2	494.28642	986.558287	0.46033	0.00022753	0.33622	0.00016619	0.79655	0.00039372	494.2865520171041	44.1	2.1251	44.177	43.626	45.752	0.077515					138	77	2	0	0	0	0.019245	4	9781	9635;9687;9734;9781		65.235	30.992	1	10883000			29842	1420	17274	17275	36733;36734;36735;36736	36736		175			0.06446990950826148
MPRGVVVTL	9	Oxidation (M)	_M(Oxidation (M))PRGVVVTL_		M(1)PRGVVVTL		M(65)PRGVVVTL	0	0	1		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2866516113281	2	494.28642	986.558287	0.36293	0.00017939	0.41006	0.00020268	0.77298	0.00038207	494.2865714286742	44.05	2.0922	44.134	43.522	45.614	0.083992					136	77	2	0	0	0	0.019245	3	9706	9614;9657;9706		65.235	33.733	1	10321000			29843	1420	17274	17275	36737;36738;36739	36739		175			0.06446990950826148
MPRNGTGVLIL	11	Oxidation (M)	_M(Oxidation (M))PRNGTGVLIL_		M(1)PRNGTGVLIL		M(42)PRNGTGVLIL	0	0	1		ENSG00000088205|ENST00000263239|DDX18;ENST00000450119.1_1_10:92813377-92813905:+|nuORF	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8342895507812	2	593.834265	1185.65398	0.74099	0.00044003	-0.14479	-8.5984E-05	0.59619	0.00035404	593.8341579862679	50.043	0.80218	50.064	49.776	50.578	0.020695					67	29	3	0	0	0	0.087802	1	11555	11555		42.312	11.044	1	986350			29844	1317	17275	17276	36740	36740		163			0.06857719071081192
MPRWGLLLLL	10	Unmodified	_MPRWGLLLLL_					0	0	0		nc|ENSG00000143839|P00797-2|REN;ENSG00000143839|ENST00000272190|REN	nc|ENSG00000143839|P00797-2|REN	nc|ENSG00000143839|P00797-2|REN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3695068359375	2	606.370287	1210.72602	0.27478	0.00016662	-0.11285	-6.8428E-05	0.16193	9.8192E-05	606.3698777638457	111.02	0.24193	111.01	110.93	111.17	-0.013939					51	36	2	0	0	0	0.41512	1	28915	28915		0.40072	0	1	205190			29845	4552	17276	17277	36741	36741					0.12908678215467262
MPSASMTRL	9	2 Oxidation (M)	_M(Oxidation (M))PSASM(Oxidation (M))TRL_		M(1)PSASM(1)TRL		M(87)PSASM(87)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2413940429688	2	513.241352	1024.46815	0.079199	4.0648E-05	0.035763	1.8355E-05	0.11496	5.9003E-05	513.2413550623394	22.984	0.49746	22.984	22.675	23.173	0					31	16	2	0	0	0	0.0048951	1	3313	3313		87.258	43.4	1	662800			29846	1891	17277	17278	36742	36742		228;229			-0.04310426439906223
MPSASMTRL	9	2 Oxidation (M)	_M(Oxidation (M))PSASM(Oxidation (M))TRL_		M(1)PSASM(1)TRL		M(81)PSASM(81)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2413940429688	2	513.241352	1024.46815	0.13811	7.0882E-05	-0.29999	-0.00015397	-0.16189	-8.3087E-05	513.241387966671	23.598	1.0369	23.598	22.763	23.8	0					104	35	4	0	0	0	0.0091837	3	3515	3415;3468;3515		80.676	50.432	1	867080			29847	1891	17277	17278	36743;36744;36745	36745		228;229			-0.04310426439906223
MPSASMTRL	9	2 Oxidation (M)	_M(Oxidation (M))PSASM(Oxidation (M))TRL_		M(1)PSASM(1)TRL		M(65)PSASM(65)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2413940429688	2	513.241352	1024.46815	0.20981	0.00010768	-0.43419	-0.00022284	-0.22438	-0.00011516	513.2413082697508	23.991	1.0828	23.991	23.734	24.817	0					82	36	4	0	0	0	0.01909	3	3606	3561;3606;3649		65.474	40.074	1	829660			29848	1891	17277	17278	36746;36747;36748	36747		228;229			-0.04310426439906223
MPSASMTRL	9	2 Oxidation (M)	_M(Oxidation (M))PSASM(Oxidation (M))TRL_		M(1)PSASM(1)TRL		M(81)PSASM(81)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2413330078125	2	513.241352	1024.46815	0.044208	2.2689E-05	0.082944	4.257E-05	0.12715	6.526E-05	513.2413817473531	23.051	0.50639	22.963	22.658	23.165	-0.087608					31	17	2	0	0	0	0.0091837	1	3341	3341		80.676	48.371	1	711060			29849	1891	17277	17278	36749	36749		228;229			-0.04310426439906223
MPSASMTRL	9	2 Oxidation (M)	_M(Oxidation (M))PSASM(Oxidation (M))TRL_		M(1)PSASM(1)TRL		M(110)PSASM(110)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2416381835938	2	513.241352	1024.46815	0.13338	6.8457E-05	-0.28532	-0.00014644	-0.15194	-7.7983E-05	513.241370273578	23.716	1.1015	23.643	22.751	23.852	-0.072559					101	38	4	0	0	0	0.0023895	5	3442	3396;3442;3489;3531;3577		107.1	63.241	1	984420			29850	1891	17277	17278	36750;36751;36752;36753;36754	36751		228;229			-0.04310426439906223
MPSASMTRL	9	2 Oxidation (M)	_M(Oxidation (M))PSASM(Oxidation (M))TRL_		M(1)PSASM(1)TRL		M(72)PSASM(72)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2415161132812	2	513.241352	1024.46815	0.23335	0.00011977	-0.33524	-0.00017206	-0.10189	-5.2292E-05	513.241332590436	24.133	0.79077	24.06	23.821	24.612	-0.072559					76	26	4	0	0	0	0.015027	2	3673	3629;3673		71.708	41.071	1	786190			29851	1891	17277	17278	36755;36756	36756		228;229			-0.04310426439906223
MPSASMTRL	9	2 Oxidation (M)	_M(Oxidation (M))PSASM(Oxidation (M))TRL_		M(1)PSASM(1)TRL		M(97)PSASM(97)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2413940429688	2	513.241352	1024.46815	0.14127	7.2504E-05	-0.32882	-0.00016876	-0.18755	-9.626E-05	513.2413137049105	23.103	0.5177	23.058	22.76	23.277	-0.044865					57	18	4	0	0	0	0.003673	2	3350	3304;3350		96.936	60.809	1	701330			29852	1891	17277	17278	36757;36758	36758		228;229			-0.04310426439906223
MPSASMTRL	9	2 Oxidation (M)	_M(Oxidation (M))PSASM(Oxidation (M))TRL_		M(1)PSASM(1)TRL		M(100)PSASM(100)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2412719726562	2	513.241352	1024.46815	0.26305	0.00013501	-0.52881	-0.00027141	-0.26576	-0.0001364	513.2412881007417	23.743	0.7065	23.704	23.202	23.909	-0.038927					82	24	4	0	0	0	0.0032746	4	3537	3449;3490;3537;3579		100.09	57.996	1	900770			29853	1891	17277	17278	36759;36760;36761;36762	36761		228;229			-0.04310426439906223
MPSASMTRL	9	2 Oxidation (M)	_M(Oxidation (M))PSASM(Oxidation (M))TRL_		M(1)PSASM(1)TRL		M(74)PSASM(74)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.241455078125	2	513.241352	1024.46815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.023	1	23.984	23.484	24.484	-0.038927								0	0	0	0.014089	1	3623	3623		74.2	41.894	1				29854	1891	17277	17278	36763	36763		228;229			-0.04310426439906223
MPSASMTRL	9	2 Oxidation (M)	_M(Oxidation (M))PSASM(Oxidation (M))TRL_		M(1)PSASM(1)TRL		M(90)PSASM(90)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2415161132812	2	513.241352	1024.46815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.17	1	24.131	23.631	24.631	-0.038927								0	0	0	0.0035571	1	3667	3667		90.135	54.008	1				29855	1891	17277	17278	36764	36764		228;229			-0.04310426439906223
MPSASMTRL	9	2 Oxidation (M)	_M(Oxidation (M))PSASM(Oxidation (M))TRL_		M(1)PSASM(1)TRL		M(50)PSASM(50)TRL	0	0	2		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2415771484375	2	513.241352	1024.46815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.338	1	24.299	23.799	24.799	-0.038927								0	0	0	0.08786	1	3718	3718		49.527	24.128	1				29856	1891	17277	17278	36765	36765		228;229			-0.04310426439906223
MPSASMTRLM	10	3 Oxidation (M)	_M(Oxidation (M))PSASM(Oxidation (M))TRLM(Oxidation (M))_		M(1)PSASM(1)TRLM(1)		M(61)PSASM(61)TRLM(61)	0	0	3		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.2601318359375	2	586.759052	1171.50355	0.15564	9.1325E-05	-0.74974	-0.00043992	-0.5941	-0.00034859	586.7590184446574	23.399	1.6125	23.399	22.446	24.058	0					170	55	4	0	0	0	0.040516	1	3479	3479		61.09	43.977	1	266580			29857	1891	17278	17279	36766	36766		228;229;231			-0.07534131974421143
MPSASMTRLM	10	3 Oxidation (M)	_M(Oxidation (M))PSASM(Oxidation (M))TRLM(Oxidation (M))_		M(1)PSASM(1)TRLM(1)		M(41)PSASM(41)TRLM(41)	0	0	3		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.75927734375	2	586.759052	1171.50355	0.14765	8.6633E-05	-0.7573	-0.00044435	-0.60966	-0.00035772	586.759064273541	23.5	1.6804	23.423	22.494	24.174	-0.077484					178	58	4	0	0	0	0.13386	1	3525	3525		40.725	29.925	1	270060			29858	1891	17278	17279	36767	36767		228;229;231			-0.07534131974421143
MPSLKHIVEL	10	Oxidation (M)	_M(Oxidation (M))PSLKHIVEL_		M(1)PSLKHIVEL		M(65)PSLKHIVEL	0	0	1		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.830810546875	2	591.831191	1181.64783	0.68743	0.00040684	-0.67364	-0.00039868	0.013787	8.1594E-06	591.8307970341422	45.517	0.46059	45.517	45.315	45.776	0					36	16	3	0	0	0	0.026238	1	10186	10186		64.927	42.19	1	379550			29859	4022	17279	17280	36768	36768		507			0.06427200839539182
MPSLKHIVEL	10	Oxidation (M)	_M(Oxidation (M))PSLKHIVEL_		M(1)PSLKHIVEL		M(57)PSLKHIVEL	0	0	1		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8314208984375	2	591.831191	1181.64783	0.56788	0.00033609	-0.44151	-0.0002613	0.12637	7.4789E-05	591.8308943190223	46.016	0.57778	46.016	45.72	46.298	0					30	20	2	0	0	0	0.058058	1	10339	10339		57.249	34.101	1	735210			29860	4022	17279	17280	36769	36769		507			0.06427200839539182
MPSLKHIVEL	10	Oxidation (M)	_M(Oxidation (M))PSLKHIVEL_		M(1)PSLKHIVEL		M(67)PSLKHIVEL	0	0	1		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.3323974609375	2	591.831191	1181.64783	0.68606	0.00040603	-0.60064	-0.00035548	0.085414	5.055E-05	591.8307795529687	45.394	0.4814	45.454	45.195	45.677	0.059834					34	16	3	0	0	0	0.024262	1	10148	10148		67.081	47.824	1	394750			29861	4022	17279	17280	36770	36770		507			0.06427200839539182
MPSLKHIVEL	10	Oxidation (M)	_M(Oxidation (M))PSLKHIVEL_		M(1)PSLKHIVEL		M(85)PSLKHIVEL	0	0	1		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8311157226562	2	591.831191	1181.64783	0.23179	0.00013718	0.15636	9.254E-05	0.38815	0.00022972	591.8311806880246	45.844	0.47359	45.904	45.677	46.15	0.059834					26	16	2	0	0	0	0.0082636	1	10285	10285		84.522	61.786	1	662480			29862	4022	17279	17280	36771	36771		507			0.06427200839539182
MPSLKHIVEL	10	Oxidation (M)	_M(Oxidation (M))PSLKHIVEL_		M(1)PSLKHIVEL		M(79)PSLKHIVEL	0	0	1		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.8313598632812	2	591.831191	1181.64783	0.50282	0.00029758	-0.59405	-0.00035158	-0.091231	-5.3994E-05	591.8307052485846	45.39	0.50347	45.455	45.199	45.703	0.065048					42	18	3	0	0	0	0.012937	1	10143	10143		79.427	57.89	1	485170			29863	4022	17279	17280	36772	36772		507			0.06427200839539182
MPSLKHIVEL	10	Oxidation (M)	_M(Oxidation (M))PSLKHIVEL_					0	0	1		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	591.831191	1181.64783	0.57603	0.00034091	-0.44038	-0.00026063	0.13565	8.0283E-05	591.8309664142947	45.841	0.52662	45.906	45.647	46.174	0.065048	-0.036042	-0.00012816	NaN	84.522	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413510			29864	4022	17279	17280				507			0.06427200839539182
MPSPVRTVI	9	Oxidation (M)	_M(Oxidation (M))PSPVRTVI_		M(1)PSPVRTVI		M(63)PSPVRTVI	0	0	1		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2840270996094	2	508.283877	1014.5532	0.29547	0.00015018	-0.60539	-0.00030771	-0.30992	-0.00015753	508.2837662124309	38.228	1.0353	38.228	37.342	38.377	0					61	36	3	0	0	0	0.022205	1	7941	7941		63.227	19.455	1	1191400			29865	1455	17280	17281	36773	36773		179			0.04650687088212635
MPSPVRTVI	9	Oxidation (M)	_M(Oxidation (M))PSPVRTVI_		M(1)PSPVRTVI		M(55)PSPVRTVI	0	0	1		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8034973144531	2	508.283877	1014.5532	0.043066	2.189E-05	0.71258	0.00036219	0.75565	0.00038408	508.2840897089279	38.578	0.81634	38.578	38.347	39.164	0					70	28	4	0	0	0	0.043711	1	8045	8045		55.235	11.462	1	1616700			29866	1455	17280	17281	36774	36774		179			0.04650687088212635
MPSPVRTVI	9	Oxidation (M)	_M(Oxidation (M))PSPVRTVI_		M(1)PSPVRTVI		M(51)PSPVRTVI	0	0	1		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.283935546875	2	508.283877	1014.5532	0.34409	0.0001749	-0.79604	-0.00040461	-0.45194	-0.00022971	508.2837139990748	38.124	1.0115	38.215	37.388	38.399	0.090881					76	36	4	0	0	0	0.053988	1	7909	7909		51.415	14.909	1	1246100			29867	1455	17280	17281	36775	36775		179			0.04650687088212635
MPSPVRTVI	9	Oxidation (M)	_M(Oxidation (M))PSPVRTVI_		M(1)PSPVRTVI		M(44)PSPVRTVI	0	0	1		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.803466796875	2	508.283877	1014.5532	0.32546	0.00016543	0.64146	0.00032604	0.96692	0.00049147	508.2839267628074	38.49	0.92999	38.581	38.347	39.276	0.090881					59	33	3	0	0	0	0.073988	1	8024	8024		43.982	7.4756	1	1767900			29868	1455	17280	17281	36776	36776		179			0.04650687088212635
MPSPVRTVI	9	Oxidation (M)	_M(Oxidation (M))PSPVRTVI_		M(1)PSPVRTVI		M(48)PSPVRTVI	0	0	1		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8034973144531	2	508.283877	1014.5532	0.336	0.00017078	0.062051	3.1539E-05	0.39805	0.00020232	508.2838412736381	38.464	1.1191	38.562	37.953	39.072	0.097527					81	39	4	0	0	0	0.063898	1	8005	8005		47.732	11.226	1	1494400			29869	1455	17280	17281	36777	36777		179			0.04650687088212635
MPSPVRTVI	9	Oxidation (M)	_M(Oxidation (M))PSPVRTVI_		M(1)PSPVRTVI		M(55)PSPVRTVI	0	0	1		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2840270996094	2	508.283877	1014.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.064	1	38.161	37.661	38.661	0.097527								0	0	0	0.068856	1	7892	7892		55.235	11.462	1				29870	1455	17280	17281	36778	36778		179			0.04650687088212635
MPSQFRDIL	9	Oxidation (M)	_M(Oxidation (M))PSQFRDIL_		M(1)PSQFRDIL		M(59)PSQFRDIL	0	0	1		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7844848632812	2	561.784241	1121.55393	0.29918	0.00016808	-0.10411	-5.8489E-05	0.19507	0.00010959	561.7841801685533	49.964	0.80746	49.964	49.6	50.407	0					72	29	3	0	0	0	0.074421	1	11563	11563		59.052	32.784	1	1142000			29871	1586	17281	17282	36779	36779		198			-0.0019851826273225015
MPSQFRDIL	9	Oxidation (M)	_M(Oxidation (M))PSQFRDIL_		M(1)PSQFRDIL		M(73)PSQFRDIL	0	0	1		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.784423828125	2	561.784241	1121.55393	0.57756	0.00032446	-0.093442	-5.2494E-05	0.48411	0.00027197	561.7841000334716	49.965	0.73397	50.01	49.669	50.403	0.044888					69	27	3	0	0	0	0.037402	1	11574	11574		73.196	37.069	1	966180			29872	1586	17281	17282	36780	36780		198			-0.0019851826273225015
MPSQFRDIL	9	Oxidation (M)	_M(Oxidation (M))PSQFRDIL_		M(1)PSQFRDIL		M(69)PSQFRDIL	0	0	1		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7845458984375	2	561.784241	1121.55393	0.48497	0.00027245	-0.14813	-8.3214E-05	0.33684	0.00018923	561.7840787029044	50.022	0.79336	50.042	49.644	50.437	0.020691					69	29	3	0	0	0	0.044909	1	11558	11558		69.338	33.211	1	964270			29873	1586	17281	17282	36781	36781		198			-0.0019851826273225015
MPTMRLLSF	9	2 Oxidation (M)	_M(Oxidation (M))PTM(Oxidation (M))RLLSF_		M(1)PTM(1)RLLSF		M(78)PTM(78)RLLSF	0	0	2		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.2830810546875	2	564.28302	1126.55149	0.34526	0.00019482	0.8592	0.00048483	1.2045	0.00067966	564.2833902139616	51.549	0.95777	51.549	51.222	52.18	0					61	35	2	0	0	0	0.010888	2	12023	12023;12060		78.06	30.453	1	1363100			29874	9756	17282	17283	36782;36783	36782		932;933			-0.0067268999205225555
MPTMRLLSF	9	2 Oxidation (M)	_M(Oxidation (M))PTM(Oxidation (M))RLLSF_		M(1)PTM(1)RLLSF		M(74)PTM(74)RLLSF	0	0	2		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.2827758789062	2	564.28302	1126.55149	0.36816	0.00020775	0.87326	0.00049276	1.2414	0.00070051	564.2834408351744	51.478	0.81085	51.525	51.245	52.056	0.046574					47	29	2	0	0	0	0.013404	1	12011	12011		74.2	21.931	1	1222900			29875	9756	17282	17283	36784	36784		932;933			-0.0067268999205225555
MPTMRLLSF	9	2 Oxidation (M)	_M(Oxidation (M))PTM(Oxidation (M))RLLSF_		M(1)PTM(1)RLLSF		M(78)PTM(78)RLLSF	0	0	2		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.2824096679688	2	564.28302	1126.55149	0.24284	0.00013703	0.24105	0.00013602	0.48389	0.00027305	564.2831844599443	51.605	0.69522	51.615	51.297	51.992	0.0095673					42	25	2	0	0	0	0.010888	2	12030	12030;12072		78.06	43.659	1	1401300			29876	9756	17282	17283	36785;36786	36785		932;933			-0.0067268999205225555
MPVAVVGGI	9	Unmodified	_MPVAVVGGI_					0	0	0			REV__nc|ENSG00000165949|P40305-1|IFI27	REV__nc|ENSG00000165949|P40305-1|IFI27	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.75128173828125	2	421.743857	841.47316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.367	1	66.451	65.951	66.951	0.083832								0	0	0	0.24077	1	16600	16600		9.3474	0.75416	1		+		29877	23074	17283	17284	36787	36787					0.04608245485030693
MPVIPMNTI	9	2 Oxidation (M)	_M(Oxidation (M))PVIPM(Oxidation (M))NTI_		M(1)PVIPM(1)NTI		M(96)PVIPM(96)NTI	0	0	2		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2645874023438	2	524.264296	1046.51404	0.55553	0.00029124	0.20852	0.00010932	0.76405	0.00040056	524.2645208131355	52.52	4.3562	52.52	50.818	55.174	0					354	160	5	0	0	0	0.0037552	4	12341	12191;12239;12291;12341		96.285	66.444	1	10291000			29878	4752	17284	17285	36788;36789;36790;36791	36791		592;593			-0.00735781257662893
MPVIPMNTI	9	2 Oxidation (M)	_M(Oxidation (M))PVIPM(Oxidation (M))NTI_		M(1)PVIPM(1)NTI		M(96)PVIPM(96)NTI	0	0	2		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2640991210938	2	524.264296	1046.51404	0.57954	0.00030383	0.32337	0.00016953	0.90291	0.00047337	524.2645629837011	52.513	5.0046	52.564	50.933	55.938	0.050575					363	186	4	0	0	0	0.0037552	7	12416	12188;12233;12276;12326;12375;12416;12548		96.285	56.695	1	9697500			29879	4752	17284	17285	36792;36793;36794;36795;36796;36797;36798	36797		592;593			-0.00735781257662893
MPVIPMNTI	9	2 Oxidation (M)	_M(Oxidation (M))PVIPM(Oxidation (M))NTI_		M(1)PVIPM(1)NTI		M(82)PVIPM(82)NTI	0	0	2		nc|ENSG00000147162|O15294-4|OGT;nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-4|OGT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2650146484375	2	524.264296	1046.51404	0.40332	0.00021145	0.4614	0.0002419	0.86472	0.00045334	524.2646456244003	52.535	3.2924	52.534	51.005	54.298	-0.00081253					319	122	5	0	0	0	0.0085732	5	12225	12180;12225;12274;12318;12371		81.613	45.486	1	10855000			29880	4752	17284	17285	36799;36800;36801;36802;36803	36800		592;593			-0.00735781257662893
MPWGWDYSGS	10	Unmodified	_MPWGWDYSGS_					0	0	0		ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8294067382812	2	593.237124	1184.45969	0.72404	0.00042953	-1.7058	-0.001012	-0.98179	-0.00058244	593.2362202843694	77.441	0.35558	77.441	77.308	77.663	0					22	12	2	0	0	0	0.31889	1	20017	20017		6.2058	3.2105	1	213380			29881	4141	17285	17286	36804	36804					-0.1251565708491853
MPWGWDYSGS	10	Unmodified	_MPWGWDYSGS_					0	0	0		ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8292846679688	2	593.237124	1184.45969	0.81769	0.00048508	-1.4643	-0.00086867	-0.6466	-0.00038359	593.2365591214393	77.515	0.44279	77.483	77.287	77.73	-0.031334					28	15	3	0	0	0	0.31039	1	19979	19979		18.146	11.423	1	203700			29882	4141	17285	17286	36805	36805					-0.1251565708491853
MPYASKGLYL	10	Oxidation (M)	_M(Oxidation (M))PYASKGLYL_		M(1)PYASKGLYL		M(83)PYASKGLYL	0	0	1		ENSG00000110799|ENST00000261405|VWF;ENST00000321023.5_1_12:6204574-6232125:-|nuORF;nc|ENSG00000110799|P04275-2|VWF	ENSG00000110799|ENST00000261405|VWF	ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.79736328125	2	579.796817	1157.57908	0.54432	0.00031559	0.15701	9.1033E-05	0.70132	0.00040663	579.7968996555616	47.013	0.62637	47.013	46.648	47.274	0					42	21	2	0	0	0	0.0092666	1	10645	10645		83.429	49.326	1	1218800			29883	2330	17286	17287	36806	36806		287			0.006595365398425201
MPYDFDIRV	9	Oxidation (M)	_M(Oxidation (M))PYDFDIRV_		M(1)PYDFDIRV		M(90)PYDFDIRV	0	0	1		ENSG00000137573|ENST00000402687|SULF1;ENST00000521946.5_1_8:70505207-70554528:+|nuORF	ENSG00000137573|ENST00000402687|SULF1	ENSG00000137573|ENST00000402687|SULF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.2764282226562	2	586.276249	1170.53795	0.63595	0.00037284	-0.68862	-0.00040372	-0.052668	-3.0878E-05	586.275862972379	60.915	0.7863	60.915	60.495	61.281	0					70	28	4	0	0	0	0.0045319	3	14892	14844;14892;14944		90.135	70.878	1	2135400			29884	4061	17287	17288	36807;36808;36809	36808		513			-0.04050224499678734
MPYDFDIRV	9	Oxidation (M)	_M(Oxidation (M))PYDFDIRV_		M(1)PYDFDIRV		M(90)PYDFDIRV	0	0	1		ENSG00000137573|ENST00000402687|SULF1;ENST00000521946.5_1_8:70505207-70554528:+|nuORF	ENSG00000137573|ENST00000402687|SULF1	ENSG00000137573|ENST00000402687|SULF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.276123046875	2	586.276249	1170.53795	0.53991	0.00031654	-0.48903	-0.00028671	0.050879	2.9829E-05	586.2760419850457	60.842	0.90745	60.939	60.477	61.385	0.096985					75	32	4	0	0	0	0.0045319	3	14856	14813;14856;14904		90.135	70.878	1	1878600			29885	4061	17287	17288	36810;36811;36812	36811		513			-0.04050224499678734
MPYDFDIRV	9	Oxidation (M)	_M(Oxidation (M))PYDFDIRV_		M(1)PYDFDIRV		M(100)PYDFDIRV	0	0	1		ENSG00000137573|ENST00000402687|SULF1;ENST00000521946.5_1_8:70505207-70554528:+|nuORF	ENSG00000137573|ENST00000402687|SULF1	ENSG00000137573|ENST00000402687|SULF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.2763061523438	2	586.276249	1170.53795	0.64156	0.00037613	-0.39768	-0.00023315	0.24388	0.00014298	586.2760628630805	60.893	0.93854	60.884	60.461	61.399	-0.0094566					86	34	5	0	0	0	0.0032746	2	14853	14853;14948		100.09	60.133	1	2555700			29886	4061	17287	17288	36813;36814	36813		513			-0.04050224499678734
MPYEFDIRV	9	Oxidation (M)	_M(Oxidation (M))PYEFDIRV_		M(1)PYEFDIRV		M(55)PYEFDIRV	0	0	1		ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2	ENSG00000196562|ENST00000688720|SULF2	ENSG00000196562|ENST00000688720|SULF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.7353515625	2	593.284074	1184.5536	0.79959	0.00047439	-0.83529	-0.00049557	-0.035701	-2.1181E-05	593.2836862269988	60.854	0.63463	60.854	60.469	61.103	0					33	22	2	0	0	0	0.10763	1	14917	14917		55.235	40.396	1	809770			29887	7880	17288	17289	36815	36815		856			-0.03129937982635056
MPYEFDIRV	9	Oxidation (M)	_M(Oxidation (M))PYEFDIRV_		M(1)PYEFDIRV		M(63)PYEFDIRV	0	0	1		ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2	ENSG00000196562|ENST00000688720|SULF2	ENSG00000196562|ENST00000688720|SULF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.2842407226562	2	593.284074	1184.5536	0.79064	0.00046907	-0.7403	-0.00043921	0.050341	2.9867E-05	593.2838674575637	60.639	0.50058	60.736	60.477	60.978	0.096985					39	17	3	0	0	0	0.022205	1	14852	14852		63.227	48.389	1	817800			29888	7880	17288	17289	36816	36816		856			-0.03129937982635056
MPYEFDIRV	9	Oxidation (M)	_M(Oxidation (M))PYEFDIRV_		M(1)PYEFDIRV		M(72)PYEFDIRV	0	0	1		ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2	ENSG00000196562|ENST00000688720|SULF2	ENSG00000196562|ENST00000688720|SULF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.2846069335938	2	593.284074	1184.5536	0.78162	0.00046372	-0.18574	-0.0001102	0.59588	0.00035352	593.283992888146	60.836	0.53675	60.826	60.431	60.968	-0.0094566					32	19	2	0	0	0	0.060198	1	14861	14861		71.708	47.687	1	1016400			29889	7880	17288	17289	36817	36817		856			-0.03129937982635056
MPYHIRSI	8	Oxidation (M)	_M(Oxidation (M))PYHIRSI_		M(1)PYHIRSI		M(60)PYHIRSI	0	0	1		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;nc|ENSG00000113721|P09619-2|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7686157226562	2	516.768394	1031.52224	0.4978	0.00025725	-0.27138	-0.00014024	0.22642	0.00011701	516.7683195236011	29.845	0.73354	29.845	29.492	30.225	0					66	25	4	0	0	0	0.16891	1	5372	5372		60.074	30.992	1	596690			29890	2525	17289	17290	36818	36818		316			0.007735337739404713
MPYHIRSI	8	Oxidation (M)	_M(Oxidation (M))PYHIRSI_		M(1)PYHIRSI		M(52)PYHIRSI	0	0	1		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;nc|ENSG00000113721|P09619-2|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7684326171875	2	516.768394	1031.52224	0.33166	0.00017139	-0.027586	-1.4256E-05	0.30408	0.00015714	516.7684371353624	29.793	0.64129	29.806	29.532	30.173	0.012266					54	21	3	0	0	0	0.25475	1	5362	5362		51.63	22.548	1	606060			29891	2525	17289	17290	36819	36819		316			0.007735337739404713
MPYHIRSI	8	Oxidation (M)	_M(Oxidation (M))PYHIRSI_		M(1)PYHIRSI		M(52)PYHIRSI	0	0	1		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;nc|ENSG00000113721|P09619-2|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7686767578125	2	516.768394	1031.52224	-0.0021293	-1.1004E-06	0.04036	2.0857E-05	0.038231	1.9756E-05	516.7684056821331	29.818	0.96199	29.831	29.274	30.236	0.013474					57	32	3	0	0	0	0.25475	1	5365	5365		51.63	15.503	1	613390			29892	2525	17289	17290	36820	36820		316			0.007735337739404713
MPYTQNFI	8	Oxidation (M)	_M(Oxidation (M))PYTQNFI_		M(1)PYTQNFI		M(61)PYTQNFI	0	0	1		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2391357421875	2	515.239135	1028.46372	0.33327	0.00017172	0.33309	0.00017162	0.66636	0.00034334	515.2392428376696	55.488	1.1272	55.488	54.974	56.101	0					109	40	3	0	0	0	0.095164	1	13149	13149		61.357	31.133	1	5655200			29893	2082	17290	17291	36821	36821		259			-0.04937567591196057
MPYTQNFI	8	Oxidation (M)	_M(Oxidation (M))PYTQNFI_		M(1)PYTQNFI		M(71)PYTQNFI	0	0	1		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2391967773438	2	515.239135	1028.46372	0.472	0.00024319	0.18906	9.7411E-05	0.66106	0.0003406	515.2391808486497	55.446	1.0766	55.517	54.971	56.048	0.070885					113	39	4	0	0	0	0.064917	2	13137	13137;13276		71.134	37.031	1	6050900			29894	2082	17290	17291	36822;36823	36822		259			-0.04937567591196057
MPYTQNFI	8	Oxidation (M)	_M(Oxidation (M))PYTQNFI_		M(1)PYTQNFI		M(67)PYTQNFI	0	0	1		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2391967773438	2	515.239135	1028.46372	0.29044	0.00014965	0.64627	0.00033298	0.9367	0.00048263	515.2393789273285	55.604	1.133	55.585	55.08	56.213	-0.019081					108	41	3	0	0	0	0.072895	1	13214	13214		67.344	17.411	1	5665000			29895	2082	17290	17291	36824	36824		259			-0.04937567591196057
MQAGQGVLCLP	11	Unmodified	_MQAGQGVLCLP_					0	0	0		ENST00000443739.6_1_7:143051732-143052089:-|nuORF	ENST00000443739.6_1_7:143051732-143052089:-|nuORF	ENST00000443739.6_1_7:143051732-143052089:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2914428710938	2	558.780644	1115.54674	0.22544	0.00012597	-3.2386	-0.0018097	-3.0132	-0.0016837	559.281050516442	66.484	0.38351	66.47	66.25	66.634	-0.013596					27	13	3	0	0	0	0.33306	1	16623	16623		19.257	5.3509	1	202680			29896	10569	17291	17292	36825	36825					-0.006415741348291704
MQCKHLMF	8	Unmodified	_MQCKHLMF_					0	0	0			REV__ENSG00000189023|ENST00000399988|MAGEB16	REV__ENSG00000189023|ENST00000399988|MAGEB16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7510986328125	2	519.240101	1036.46565	0.29464	0.00015299	-1.0758	-0.0005586	-0.78116	-0.00040561	519.7418240178173	19.593	0.22998	19.477	19.284	19.514	-0.11592					13	7	3	0	0	0	0.344	1	2261	2261		2.5775	0	1	31254	+		29897	18592	17292	17293	36826	36826					-0.051125533785580046
MQDAKKVPEVE	11	Unmodified	_MQDAKKVPEVE_					0	0	0		nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB	nc|ENSG00000133961|P49757-6|NUMB	nc|ENSG00000133961|P49757-6|NUMB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.3268432617188	2	637.32647	1272.63839	0.7998	0.00050974	0.010699	6.819E-06	0.8105	0.00051655	637.3262829731249	84.375	0.63467	84.358	84.072	84.706	-0.016823					61	25	3	0	0	0	0.47546	1	22146	22146		1.3295	0	1	559020			29898	12704	17293	17294	36827	36827					0.012973877633612574
MQETARLKP	9	Unmodified	_MQETARLKP_					0	0	0			REV__nc|ENSG00000159788|O14924-7|RGS12	REV__nc|ENSG00000159788|O14924-7|RGS12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.8068237304688	2	537.292233	1072.56991	0.64668	0.00034746	-3.6602	-0.0019666	-3.0135	-0.0016191	537.286335284554	93.033	0.45781	93.033	92.825	93.282	0.00047302					109	44	6	0	0	0	0.22674	1	24817	24817		22.736	3.4793	1	156410	+		29899	23049	17294	17295	36828	36828					0.03653187974168759
MQFKVYKPK	9	Unmodified	_MQFKVYKPK_					0	0	0			REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.8486328125	2	584.830995	1167.64744	-0.028002	-1.6377E-05	-2.7608	-0.0016146	-2.7888	-0.001631	584.8290844023854	12.535	0.16775	12.439	12.356	12.523	-0.096607					9	5	2	0	0	0	0.33018	1	166	166		4.3292	0.73274	1	27282	+		29900	13140	17295	17296	36829	36829					0.07031825910326006
MQFKVYKPK	9	Unmodified	_MQFKVYKPK_					0	0	0			REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	584.830995	1167.64744	-0.031321	-1.8317E-05	-3.2819	-0.0019194	-3.3132	-0.0019377	584.829336299384	12.541	0.20801	12.541	12.433	12.641	0	0.051329	-0.00015457	NaN	4.3292	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40306	+		29901	13140	17295	17296							0.07031825910326006
MQFKVYKPK	9	Unmodified	_MQFKVYKPK_					0	0	0			REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	584.830995	1167.64744	-0.028002	-1.6377E-05	-2.7608	-0.0016146	-2.7888	-0.001631	584.8290844023854	12.535	0.16775	12.439	12.356	12.523	-0.096607	-0.051329	0.00045497	NaN	4.3292	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27282	+		29902	13140	17295	17296							0.07031825910326006
MQFNFELSF	9	Unmodified	_MQFNFELSF_					0	0	0		ENST00000296861.2_1_6:47199552-47199924:-|nuORF	ENST00000296861.2_1_6:47199552-47199924:-|nuORF	ENST00000296861.2_1_6:47199552-47199924:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.7662963867188	2	581.765517	1161.51648	0.55827	0.00032478	0.62911	0.000366	1.1874	0.00069078	582.2673681572608	83.897	0.88802	83.897	83.298	84.186	0					59	34	3	0	0	0	0.24467	1	21988	21988		17.113	2.2746	1	263320			29903	9194	17296	17297	36830	36830					-0.05781609528366971
MQFNFELSF	9	Unmodified	_MQFNFELSF_					0	0	0		ENST00000296861.2_1_6:47199552-47199924:-|nuORF	ENST00000296861.2_1_6:47199552-47199924:-|nuORF	ENST00000296861.2_1_6:47199552-47199924:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.765869140625	2	581.765517	1161.51648	0.51629	0.00030036	1.1622	0.00067612	1.6785	0.00097648	582.2675046872699	83.906	1.4457	83.889	83.288	84.734	-0.016823					121	61	4	0	0	0	0.16283	2	21921	21921;21987		29.082	0.96379	1	276210			29904	9194	17296	17297	36831;36832	36831					-0.05781609528366971
MQFSKPRK	8	Unmodified	_MQFSKPRK_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.8002014160156	2	511.284211	1020.55387	-0.10987	-5.6174E-05	-2.1953	-0.0011224	-2.3051	-0.0011786	511.2833986893284	34.212	0.72366	34.278	34.021	34.744	0.066704					36	25	2	0	0	0	0.31617	1	6774	6774		20.454	6.5476	1	171930			29905	322	17297	17298	36833	36833					0.04441526527921269
MQGLANQK	8	Unmodified	_MQGLANQK_					0	0	0			REV__nc|ENSG00000148019|Q5JTW2|CEP78	REV__nc|ENSG00000148019|Q5JTW2|CEP78	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.9150390625	2	445.231645	888.448736	0.46909	0.00020885	-1.447	-0.00064427	-0.97795	-0.00043541	445.23135031465483	20.893	0.73902	20.783	20.495	21.234	-0.11003					61	25	4	0	0	0	0.3366	1	2787	2787		18.135	2.2878	1	236200	+		29906	16411	17298	17299	36834	36834					4.985331497664447E-05
MQIEGPLIT	9	Unmodified	_MQIEGPLIT_					0	0	0			REV__nc|ENSG00000154957|P17022-2|ZNF18	REV__nc|ENSG00000154957|P17022-2|ZNF18	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2691345214844	2	501.270435	1000.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.533	1	81.533	81.033	82.033	0								0	0	0	0.2362	1	21243	21243		10.824	0	1		+		29907	16685	17299	17300	36835	36835					0.026075784770114296
MQIEGPLIT	9	Unmodified	_MQIEGPLIT_					0	0	0			REV__nc|ENSG00000154957|P17022-2|ZNF18	REV__nc|ENSG00000154957|P17022-2|ZNF18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.29071044921875	2	501.270435	1000.52632	0.8203	0.00041119	0.2812	0.00014095	1.1015	0.00055215	501.2702285438786	77.762	1.6056	77.731	77.346	78.952	-0.031334					122	60	3	0	0	0	0.2451	1	20347	20347		10.824	0	1	1057100	+		29908	16685	17299	17300	36836	36836					0.026075784770114296
MQILPEAPIE	10	Unmodified	_MQILPEAPIE_					0	0	0			REV__ENSG00000205108|ENST00000378788|FAM205A	REV__ENSG00000205108|ENST00000378788|FAM205A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8222045898438	2	570.8021	1139.58965	0.3768	0.00021508	1.2981	0.00074098	1.6749	0.00095606	570.8030312277762	43.73	0.43191	43.807	43.567	43.999	0.077515					24	15	2	0	0	0	0.3258	1	9573	9573		17.113	1.2657	1	233050	+		29909	18982	17300	17301	36837	36837					0.025435191942506208
MQKEEYWRRRE	11	Unmodified	_MQKEEYWRRRE_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2156066894531	4	403.451862	1609.77834	-0.39808	-0.00016061	-0.054834	-2.2123E-05	-0.45292	-0.00018273	403.45174042897804	22.841	0.44693	22.754	22.599	23.046	-0.087608					26	15	3	0	0	0	0.33352	1	3224	3224		0	0	1	58134			29910	711	17301	17302	36838	36838					-0.002154351795979892
MQKEEYWRRRE	11	Unmodified	_MQKEEYWRRRE_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		4	403.451862	1609.77834	-0.3173	-0.00012802	0.038467	1.552E-05	-0.27883	-0.0001125	403.7026081773014	22.784	0.51531	22.784	22.505	23.021	0	0.015187	6.9457E-05	NaN	0	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40250			29911	711	17301	17302							-0.002154351795979892
MQKRIPHTI	9	Unmodified	_MQKRIPHTI_					0	0	0		nc|ENSG00000188655|P60153|RNASE9;ENSG00000188655|ENST00000404716|RNASE9	nc|ENSG00000188655|P60153|RNASE9	nc|ENSG00000188655|P60153|RNASE9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3228149414062	2	562.323868	1122.63318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.47	1	114.45	113.95	114.95	-0.019096								0	0	0	0.26334	1	29722	29722		2.0598	0	1				29912	7766	17302	17303	36839	36839					0.07677173482056787
MQLGVHYSK	9	Oxidation (M)	_M(Oxidation (M))QLGVHYSK_		M(1)QLGVHYSK		M(69)QLGVHYSK	0	0	1		ENST00000554969.5_1_14:21731484-21731862:-|nuORF;ENST00000430246.6_1_14:21731784-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7709350585938	2	539.771134	1077.52771	0.35112	0.00018952	0.0052683	2.8437E-06	0.35639	0.00019237	539.7710264819202	22.25	0.8246	22.25	21.966	22.791	0					62	28	3	0	0	0	0.016571	4	3047	3030;3047;3097;3156		69.338	40.851	1	324630			29913	10460	17303	17304	36840;36841;36842;36843	36841		945			-0.007947874342335126
MQLGVHYSK	9	Oxidation (M)	_M(Oxidation (M))QLGVHYSK_		M(1)QLGVHYSK		M(61)QLGVHYSK	0	0	1		ENST00000554969.5_1_14:21731484-21731862:-|nuORF;ENST00000430246.6_1_14:21731784-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.771240234375	2	539.771134	1077.52771	0.35452	0.00019136	-0.11906	-6.4264E-05	0.23546	0.00012709	539.771041212822	22.355	0.91927	22.255	21.888	22.807	-0.10034					63	33	2	0	0	0	0.027957	3	3092	3092;3138;3189		61.09	33.488	1	306040			29914	10460	17303	17304	36844;36845;36846	36844		945			-0.007947874342335126
MQLGVHYSK	9	Oxidation (M)	_M(Oxidation (M))QLGVHYSK_		M(1)QLGVHYSK		M(59)QLGVHYSK	0	0	1		ENST00000554969.5_1_14:21731484-21731862:-|nuORF;ENST00000430246.6_1_14:21731784-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	ENST00000554969.5_1_14:21731484-21731862:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7714233398438	2	539.771134	1077.52771	0.33848	0.0001827	-0.14623	-7.893E-05	0.19225	0.00010377	539.7710440558133	22.356	0.90764	22.307	21.906	22.814	-0.048613					60	31	2	0	0	0	0.033439	3	3156	3051;3105;3156		59.052	29.669	1	276310			29915	10460	17303	17304	36847;36848;36849	36849		945			-0.007947874342335126
MQLLVKLF	8	Unmodified	_MQLLVKLF_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.303955078125	2	496.304081	990.59361	0.49459	0.00024547	-0.57538	-0.00028556	-0.080785	-4.0094E-05	496.3037124227817	75.276	2.0084	75.245	74.951	76.96	-0.031487					157	74	3	0	0	0	0.45015	1	19401	19401		5.7604	0	1	2632000	+		29916	17183	17304	17305	36850	36850					0.09793653478629949
MQLTEDLDSL	10	Unmodified	_MQLTEDLDSL_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2;N4BP2|p.P349Tfs*23|1|0.07|ENSG00000078177|chr4:40102889-40102890|-/A|frameshift_variant;N4BP2|p.P349Hfs*27|1|0.07|ENSG00000078177|chr4:40102890-40102891|-/ATTTAAAGAACTA|frameshift_variant	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.377197265625	2	582.776279	1163.538	0.29493	0.00017188	-1.4954	-0.00087151	-1.2005	-0.00069963	582.7762279878607	39.564	0.365	39.663	39.452	39.817	0.099407					18	12	2	0	0	0	0.31629	1	8397	8397		10.074	2.1638	1	286440			29917	1106	17305	17306	36851	36851					-0.03722269290301483
MQNHTNLK	8	Unmodified	_MQNHTNLK_					0	0	0		ENST00000318010.12_1_15:42600485-42602599:+|nuORF	ENST00000318010.12_1_15:42600485-42602599:+|nuORF	ENST00000318010.12_1_15:42600485-42602599:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.6739501953125	2	493.247826	984.481099	0.11535	5.6895E-05	-0.41349	-0.00020395	-0.29814	-0.00014706	493.24767053038335	18.949	0.73849	18.891	18.628	19.366	-0.058174					41	25	2	0	0	0	0.34294	1	2173	2173		7.2892	2.5332	1	42331			29918	9365	17306	17307	36852	36852					-0.011762272655118977
MQNILSDQF	9	Unmodified	_MQNILSDQF_					0	0	0			REV__nc|ENSG00000040933|Q96PE3-2|INPP4A	REV__nc|ENSG00000040933|Q96PE3-2|INPP4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3193359375	2	548.260599	1094.50665	0.50161	0.00027501	-1.0974	-0.00060168	-0.59583	-0.00032667	548.7606283919221	62.656	0.69197	62.647	62.302	62.994	-0.0085564					42	25	2	0	0	0	0.24848	1	15558	15558		13.906	0	1	280280	+		29919	13525	17307	17308	36853	36853					-0.03682797533747362
MQNILSDQF	9	Unmodified	_MQNILSDQF_					0	0	0			REV__nc|ENSG00000040933|Q96PE3-2|INPP4A	REV__nc|ENSG00000040933|Q96PE3-2|INPP4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	548.260599	1094.50665	0.48345	0.00026506	-0.46757	-0.00025635	0.015882	8.7074E-06	548.2613046081569	62.643	0.69132	62.643	62.292	62.984	0	-0.0054723	0.0004785	NaN	19.257	42	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331450	+		29920	13525	17307	17308							-0.03682797533747362
MQNILSDQF	9	Unmodified	_MQNILSDQF_					0	0	0			REV__nc|ENSG00000040933|Q96PE3-2|INPP4A	REV__nc|ENSG00000040933|Q96PE3-2|INPP4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.260599	1094.50665	0.59309	0.00032517	-1.0305	-0.00056498	-0.43741	-0.00023981	548.760573326556	62.558	0.67814	62.655	62.254	62.932	0.096985	0.006686	-0.00013876	NaN	19.257	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310600	+		29921	13525	17307	17308							-0.03682797533747362
MQPWEIWGVS	10	Unmodified	_MQPWEIWGVS_					0	0	0		ENST00000379484.9_1_X:21901709-21902018:+|nuORF	ENST00000379484.9_1_X:21901709-21902018:+|nuORF	ENST00000379484.9_1_X:21901709-21902018:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.22772216796875	3	411.53047	1231.56958	-0.13904	-5.7217E-05	4.375	0.0018004	4.2359	0.0017432	411.5335635682731	16.62	0.31604	16.62	16.433	16.749	0					12	10	2	0	0	0	0.32123	1	1415	1415		0.69767	0	1	17909			29922	9967	17308	17309	36854	36854					-0.03694231745726029
MQSPWPTL	8	Unmodified	_MQSPWPTL_					0	0	0		ELOVL4|p.S53Efs*16|1|0.29|ENSG00000118402|chr6:79926325-79926326|-/TC|frameshift_variant;ENSG00000118402|ENST00000369816|ELOVL4	ELOVL4|p.S53Efs*16|1|0.29|ENSG00000118402|chr6:79926325-79926326|-/TC|frameshift_variant	ELOVL4|p.S53Efs*16|1|0.29|ENSG00000118402|chr6:79926325-79926326|-/TC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2620849609375	2	480.236396	958.458238	0.54945	0.00026386	3.2428	0.0015573	3.7923	0.0018212	480.2375339902451	20.872	0.48267	20.762	20.609	21.091	-0.11003					25	16	3	0	0	0	0.3366	1	2752	2752		18.135	4.6271	1	54245			29923	283	17309	17310	36855	36855					-0.02265246382978603
MQVASIYQK	9	Unmodified	_MQVASIYQK_					0	0	0			REV__ENSG00000198730|ENST00000361367|CTR9	REV__ENSG00000198730|ENST00000361367|CTR9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7548217773438	2	534.281334	1066.54812	0.27432	0.00014657	-0.053115	-2.8378E-05	0.22121	0.00011819	534.2813098345092	19.064	0.56232	19.064	18.839	19.401	0					46	19	3	0	0	0	0.25202	1	2059	2059		10.824	0	1	164030	+		29924	18851	17310	17311	36856	36856					0.017503832255897578
MQVVPYAIR	9	Unmodified	_MQVVPYAIR_					0	0	0			REV__nc|ENSG00000007944|Q8WY64-2|MYLIP	REV__nc|ENSG00000007944|Q8WY64-2|MYLIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.297119140625	2	538.799694	1075.58484	-0.60146	-0.00032407	0.76279	0.00041099	0.16133	8.6923E-05	539.3019386511415	34.517	1.269	34.592	33.854	35.123	0.075306					89	45	4	0	0	0	0.25202	1	6854	6854		10.824	1.4765	1	353400	+		29925	13392	17311	17312	36857	36857					0.050066798421539715
MQWIGTLI	8	Unmodified	_MQWIGTLI_					0	0	0			REV__nc|ENSG00000158604|Q7Z7H5-2|TMED4	REV__nc|ENSG00000158604|Q7Z7H5-2|TMED4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.26385498046875	2	481.262413	960.510274	0.094581	4.5518E-05	1.8803	0.0009049	1.9748	0.00095042	481.2632537786025	82.031	0.72418	82.1	81.65	82.374	0.068993					43	30	2	0	0	0	0.42758	1	21405	21405		13.508	0.97634	1	258590	+		29926	16817	17312	17313	36858	36858					0.028439170308047323
MQYATGPLLK	10	Oxidation (M)	_M(Oxidation (M))QYATGPLLK_		M(1)QYATGPLLK		M(98)QYATGPLLK	0	0	1		ENST00000485923.1_1_3:150321131-150321287:+|nuORF;ENST00000471696.5_2_3:150321089-150340178:+|nuORF;ENSG00000198843|ENST00000471696|SELENOT	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.3016967773438	2	569.302267	1136.58998	0.45726	0.00026032	-0.91672	-0.00052189	-0.45946	-0.00026157	569.3015681818447	40.48	0.65407	40.48	40.193	40.847	0					59	23	3	0	0	0	0.016317	1	8645	8645		97.741	70.112	1	773360			29927	8140	17313	17314	36859	36859		885			0.0271493891409591
MQYATGPLLK	10	Oxidation (M)	_M(Oxidation (M))QYATGPLLK_		M(1)QYATGPLLK		M(63)QYATGPLLK	0	0	1		ENST00000485923.1_1_3:150321131-150321287:+|nuORF;ENST00000471696.5_2_3:150321089-150340178:+|nuORF;ENSG00000198843|ENST00000471696|SELENOT	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3017578125	2	569.302267	1136.58998	0.58004	0.00033022	-1.109	-0.00063136	-0.52896	-0.00030114	569.3015329795637	40.308	0.67506	40.401	40.123	40.798	0.09267					54	24	3	0	0	0	0.15401	1	8590	8590		63.227	50.987	1	837550			29928	8140	17313	17314	36860	36860		885			0.0271493891409591
MQYATGPLLK	10	Oxidation (M)	_M(Oxidation (M))QYATGPLLK_		M(1)QYATGPLLK		M(88)QYATGPLLK	0	0	1		ENST00000485923.1_1_3:150321131-150321287:+|nuORF;ENST00000471696.5_2_3:150321089-150340178:+|nuORF;ENSG00000198843|ENST00000471696|SELENOT	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	ENST00000485923.1_1_3:150321131-150321287:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.3019409179688	2	569.302267	1136.58998	0.40095	0.00022826	-0.93149	-0.0005303	-0.53054	-0.00030204	569.3016902663935	40.301	0.68663	40.401	40.038	40.724	0.099407					60	24	4	0	0	0	0.0055648	1	8575	8575		88.364	53.962	1	854930			29929	8140	17313	17314	36861	36861		885			0.0271493891409591
MRARKHGLV	9	Unmodified	_MRARKHGLV_					0	0	0		ENSG00000174429|ENST00000311955|ABRA	ENSG00000174429|ENST00000311955|ABRA	ENSG00000174429|ENST00000311955|ABRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.3162231445312	2	534.316377	1066.6182	0.32614	0.00017426	0.5634	0.00030104	0.88954	0.0004753	534.3168153805796	60.364	1.6835	60.459	60.105	61.789	0.095089					193	61	5	0	0	0	0.20344	1	15005	15005		23.148	23.148	1	82335000			29930	6793	17314	17315	36862	36862					0.08755726404706365
MREMKMVF	8	Unmodified	_MREMKMVF_					0	0	0			REV__ENST00000380191.8_1_10:5807813-5807927:-|nuORF	REV__ENST00000380191.8_1_10:5807813-5807927:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7393188476562	2	536.261033	1070.50751	0.31322	0.00016797	1.2089	0.00064829	1.5221	0.00081626	536.2616931058283	61.191	0.29501	61.181	61.104	61.399	-0.0094528					15	10	2	0	0	0	0.34046	1	15014	15014		14.582	1.0738	1	385310	+		29931	20544	17315	17316	36863	36863					-0.024919976900264373
MRIFRWLR	8	Unmodified	_MRIFRWLR_					0	0	0		ENST00000409609.5_1_2:189158598-189158697:+|nuORF	ENST00000409609.5_1_2:189158598-189158697:+|nuORF	ENST00000409609.5_1_2:189158598-189158697:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3438110351562	2	589.342395	1176.67024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.3	1	118.28	117.78	118.78	-0.024147								0	0	0	0.38004	1	30586	30586		0.69038	0.16561	1				29932	10252	17316	17317	36864	36864					0.088968898184703
MRIKCEIF	8	Unmodified	_MRIKCEIF_					0	0	0		ENST00000335753.8_3_10:105780303-105781420:+|nuORF	ENST00000335753.8_3_10:105780303-105781420:+|nuORF	ENST00000335753.8_3_10:105780303-105781420:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.275634765625	2	520.274998	1038.53544	0.68819	0.00035805	1.051	0.00054682	1.7392	0.00090487	520.2751944817147	83.344	1.0271	83.344	83.03	84.057	0					63	40	2	0	0	0	0.35375	2	21992	21828;21992		24.674	24.674	1	250080			29933	9482	17317	17318	36865;36866	36866					0.017716485616801947
MRISACLSF	9	Unmodified	_MRISACLSF_					0	0	0		ENST00000487692.1_1_7:91726485-91729288:+|nuORF	ENST00000487692.1_1_7:91726485-91729288:+|nuORF	ENST00000487692.1_1_7:91726485-91729288:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7412719726562	2	514.256805	1026.49906	0.16252	8.3578E-05	1.0563	0.0005432	1.2188	0.00062678	514.2573959970922	67.881	0.56345	67.865	67.534	68.098	-0.016296					27	19	2	0	0	0	0.19839	1	16961	16961		21.747	2.3076	1	166930			29934	11122	17318	17319	36867	36867					-0.013132283350159923
MRKAVKVL	8	Unmodified	_MRKAVKVL_					0	0	0		ENST00000532490.1_1_11:36103265-36250724:+|nuORF	ENST00000532490.1_1_11:36103265-36250724:+|nuORF	ENST00000532490.1_1_11:36103265-36250724:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.80023193359375	2	472.807322	943.600092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.874	1	64.862	64.362	65.362	-0.011337								0	0	0	0.37078	1	16139	16139		5.2307	0	1				29935	11640	17319	17320	36868	36868					0.1260359143001324
MRKERWWETYF	11	Unmodified	_MRKERWWETYF_					0	0	0			REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF	REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.271484375	3	544.597766	1630.77147	0.14326	7.8017E-05	0.17348	9.4479E-05	0.31674	0.0001725	544.5978974865469	13.7	0.36518	13.7	13.537	13.902	0					20	12	2	0	0	0	0.33352	1	461	461		0	0	1	63540	+		29936	19764	17320	17321	36869	36869					-0.018687480601329298
MRKERWWETYF	11	Unmodified	_MRKERWWETYF_					0	0	0			REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF	REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	544.597766	1630.77147	0.21134	0.0001151	0.37017	0.0002016	0.58152	0.00031669	544.5978797242365	13.802	0.39326	13.697	13.568	13.961	-0.10466	-0.02712	-6.5138E-05	NaN	0	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58748	+		29937	19764	17320	17321							-0.018687480601329298
MRKERWWETYF	11	Unmodified	_MRKERWWETYF_					0	0	0			REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF	REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	544.597766	1630.77147	0.2396	0.00013049	0.73301	0.00039919	0.97261	0.00052968	544.5979987459998	13.842	0.31705	13.776	13.632	13.949	-0.066068	0.051472	0.00052766	NaN	0	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79646	+		29938	19764	17320	17321							-0.018687480601329298
MRKLHISH	8	Unmodified	_MRKLHISH_					0	0	0		ENSG00000106004|ENST00000222726|HOXA5;ENSG00000120075|ENST00000239151|HOXB5	ENSG00000106004|ENST00000222726|HOXA5	ENSG00000106004|ENST00000222726|HOXA5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2904968261719	2	511.289828	1020.5651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.43	1	119.41	118.91	119.91	-0.024361								0	0	0	0.38004	1	30833	30833		0.69038	0	1				29939	2046	17321	17322	36870	36870					0.055643486220674276
MRKRRPRFRWH	11	Unmodified	_MRKRRPRFRWH_					0	0	0			REV__ENST00000477409.1_1_2:97001567-97024936:+|nuORF	REV__ENST00000477409.1_1_2:97001567-97024936:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2234497070312	3	542.644266	1624.91097	0.24802	0.00013459	2.9527	0.0016022	3.2007	0.0017368	542.6458631882831	25.483	0.38898	25.451	25.237	25.626	-0.031408					22	13	3	0	0	0	0.33351	1	4094	4094		0.094841	0.094841	1	83180	+		29940	21436	17322	17323	36871	36871					0.1235109885840302
MRLGKRRTLF	10	Unmodified	_MRLGKRRTLF_					0	0	0		nc|ENSG00000171793|P17812-2|CTPS1;ENSG00000171793|ENST00000650070|CTPS1	nc|ENSG00000171793|P17812-2|CTPS1	nc|ENSG00000171793|P17812-2|CTPS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.26458740234375	3	426.592286	1276.75503	0.55451	0.00023655	0.44134	0.00018827	0.99586	0.00042482	426.59232940384504	47.242	0.80983	47.297	46.972	47.782	0.054375					90	29	4	0	0	0	0.3213	1	10847	10847		0.69767	0.69767	1	2011000			29941	6574	17323	17324	36872	36872					0.12772215564427825
MRLHSGAHIT	10	Unmodified	_MRLHSGAHIT_					0	0	0		ENST00000427177.5_1_17:75496090-75496291:+|nuORF	ENST00000427177.5_1_17:75496090-75496291:+|nuORF	ENST00000427177.5_1_17:75496090-75496291:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7958374023438	2	561.795475	1121.5764	0.15448	8.6786E-05	0.42012	0.00023602	0.5746	0.00032281	561.7957968868445	61.19	3.6328	61.19	60.88	64.513	0					396	134	6	0	0	0	0.25219	2	14978	14978;15169		26.268	26.268	1	65648000			29942	10429	17324	17325	36873;36874	36873					0.020471259255373297
MRLHSGAHIT	10	Unmodified	_MRLHSGAHIT_					0	0	0		ENST00000427177.5_1_17:75496090-75496291:+|nuORF	ENST00000427177.5_1_17:75496090-75496291:+|nuORF	ENST00000427177.5_1_17:75496090-75496291:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7960815429688	2	561.795475	1121.5764	0.18255	0.00010256	0.40594	0.00022805	0.58849	0.00033061	561.7957646956646	61.14	3.6901	61.237	60.896	64.586	0.096985					330	134	4	0	0	0	0.25219	2	14936	14936;15138		26.268	26.268	1	65632000			29943	10429	17324	17325	36875;36876	36875					0.020471259255373297
MRLHSGAHIT	10	Unmodified	_MRLHSGAHIT_					0	0	0		ENST00000427177.5_1_17:75496090-75496291:+|nuORF	ENST00000427177.5_1_17:75496090-75496291:+|nuORF	ENST00000427177.5_1_17:75496090-75496291:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7955322265625	2	561.795475	1121.5764	0.12119	6.8086E-05	0.57575	0.00032345	0.69694	0.00039154	561.7958436262629	61.182	3.5273	61.172	60.812	64.339	-0.0094566					329	129	5	0	0	0	0.25219	1	14954	14954		26.268	26.268	1	74596000			29944	10429	17324	17325	36877	36877					0.020471259255373297
MRLIFHNH	8	Unmodified	_MRLIFHNH_					0	0	0		ENSG00000067066|ENST00000340126|SP100;ENST00000494901.5_1_2:231375770-231407658:+|nuORF	ENSG00000067066|ENST00000340126|SP100	ENSG00000067066|ENST00000340126|SP100	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.8221435546875	2	534.282003	1066.54945	0.40911	0.00021858	2.7754	0.0014829	3.1845	0.0017014	534.2834810100221	19.857	0.44475	19.857	19.6	20.045	0					21	15	2	0	0	0	0.34408	1	2338	2338		2.3027	0	1	58452			29945	855	17325	17326	36878	36878					0.018840621050003392
MRLIFHNH	8	Unmodified	_MRLIFHNH_					0	0	0		ENSG00000067066|ENST00000340126|SP100;ENST00000494901.5_1_2:231375770-231407658:+|nuORF	ENSG00000067066|ENST00000340126|SP100	ENSG00000067066|ENST00000340126|SP100	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.822509765625	2	534.282003	1066.54945	0.42782	0.00022857	2.9422	0.001572	3.37	0.0018005	534.2835962512681	20.053	0.53249	19.937	19.7	20.232	-0.11592					28	18	2	0	0	0	0.34408	1	2401	2401		2.3027	0	1	61820			29946	855	17325	17326	36879	36879					0.018840621050003392
MRLIFHNH	8	Unmodified	_MRLIFHNH_					0	0	0		ENSG00000067066|ENST00000340126|SP100;ENST00000494901.5_1_2:231375770-231407658:+|nuORF	ENSG00000067066|ENST00000340126|SP100	ENSG00000067066|ENST00000340126|SP100	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	534.282003	1066.54945	0.62661	0.00033479	2.6672	0.001425	3.2938	0.0017598	534.2838460289676	19.978	0.63846	19.922	19.423	20.062	-0.055693	0.016735	-0.00014173	NaN	2.3027	31	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49291			29947	855	17325	17326							0.018840621050003392
MRLLFIYL	8	Unmodified	_MRLLFIYL_					0	0	0		ENST00000568395.1_1_16:2722171-2722456:-|nuORF	ENST00000568395.1_1_16:2722171-2722456:-|nuORF	ENST00000568395.1_1_16:2722171-2722456:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.8482666015625	2	534.817356	1067.62016	0.30154	0.00016127	0.28887	0.00015449	0.59041	0.00031576	534.8174577967059	19.33	0.39071	19.33	19.183	19.574	0					24	13	2	0	0	0	0.34337	1	2209	2209		5.2307	0	1	61482			29948	12000	17326	17327	36880	36880					0.08905342369939717
MRLLFIYL	8	Unmodified	_MRLLFIYL_					0	0	0		ENST00000568395.1_1_16:2722171-2722456:-|nuORF	ENST00000568395.1_1_16:2722171-2722456:-|nuORF	ENST00000568395.1_1_16:2722171-2722456:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.848388671875	2	534.817356	1067.62016	0.27645	0.00014785	0.70115	0.00037499	0.9776	0.00052284	534.8176494864072	19.555	0.38217	19.439	19.26	19.642	-0.11592					19	12	2	0	0	0	0.34337	1	2262	2262		5.2307	0	1	48019			29949	12000	17326	17327	36881	36881					0.08905342369939717
MRLQKIRFQYP	11	Unmodified	_MRLQKIRFQYP_					0	0	0		nc|ENSG00000173928|Q6NVH7|SWSAP1;SWSAP1|p.P163Cfs*53|1|0.37|ENSG00000173928|chr19:11375812-11375813|TC/-|frameshift_variant;ENSG00000173928|ENST00000674460|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	nc|ENSG00000173928|Q6NVH7|SWSAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7669982910156	3	493.946618	1478.81802	0.35871	0.00017718	0.29348	0.00014496	0.65218	0.00032214	493.94698512441215	24.942	0.085573	24.942	24.872	24.958	0					4	2	2	0	0	0	0.33346	1	3890	3890		0.50596	0.051438	1	39452			29950	6761	17327	17328	36882	36882					0.09776736561821053
MRLSFFYI	8	Unmodified	_MRLSFFYI_					0	0	0			REV__ENST00000525954.5_2_8:11696136-11696226:+|nuORF	REV__ENST00000525954.5_2_8:11696136-11696226:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8630981445312	2	538.783513	1075.55247	0.52706	0.00028397	2.9621	0.0015959	3.4891	0.0018799	538.7857271075144	86.071	0.91553	86.155	85.809	86.725	0.084251					70	35	3	0	0	0	0.34039	1	22698	22698		15.847	15.847	1	165920	+		29951	21955	17328	17329	36883	36883					0.01771892439160183
MRPAPQIEKM	10	Unmodified	_MRPAPQIEKM_					0	0	0			REV__COL8A1|p.L493Yfs*40|1|0.25|ENSG00000144810|chr3:99795377-99795377|T/-|frameshift_variant	REV__COL8A1|p.L493Yfs*40|1|0.25|ENSG00000144810|chr3:99795377-99795377|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3282470703125	2	600.815018	1199.61548	0.13105	7.8738E-05	-0.60424	-0.00036304	-0.47319	-0.0002843	600.8146904584925	12.817	0.23305	12.817	12.641	12.874	0					12	7	2	0	0	0	0.32132	1	230	230		1.4819	0.28856	1	31754	+		29952	13241	17329	17330	36884	36884					0.023660901648781874
MRRPAAVPLL	10	Unmodified	_MRRPAAVPLL_					0	0	0		ENSG00000172382|ENST00000302641|PRSS27	ENSG00000172382|ENST00000302641|PRSS27	ENSG00000172382|ENST00000302641|PRSS27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3218994140625	2	562.342061	1122.66957	0.29673	0.00016686	1.7486	0.00098329	2.0453	0.0011502	562.3427614720276	96.458	0.34624	96.453	96.198	96.544	-0.0055466					56	34	2	0	0	0	0.3198	1	25813	25813		4.3292	4.3292	1	109990			29953	6631	17330	17331	36885	36885					0.11314050378769025
MRVKKTMPF	9	Unmodified	_MRVKKTMPF_					0	0	0		ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7	ENSG00000196116|ENST00000355295|TDRD7	ENSG00000196116|ENST00000355295|TDRD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.76416015625	2	569.317197	1136.61984	0.40666	0.00023152	-0.9821	-0.00055913	-0.57544	-0.00032761	569.3166272293234	29.606	0.12535	29.618	29.56	29.685	0.012266					6	3	2	0	0	0	0.25879	1	5310	5310		4.756	0	1	50854			29954	7822	17331	17332	36886	36886					0.05699599378453968
MRVVRKKALL	10	Unmodified	_MRVVRKKALL_					0	0	0			REV__nc|ENSG00000110148|P32239-3|CCKBR	REV__nc|ENSG00000110148|P32239-3|CCKBR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2783508300781	3	405.269032	1212.78527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.005	1	87.093	86.593	87.593	0.08709								0	0	0	0.36944	1	22916	22916		6.6304	3.5581	1		+		29955	14665	17332	17333	36887	36887					0.18738574229632832
MRVVRKKALL	10	Unmodified	_MRVVRKKALL_					0	0	0			REV__nc|ENSG00000110148|P32239-3|CCKBR	REV__nc|ENSG00000110148|P32239-3|CCKBR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2783508300781	3	405.269032	1212.78527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.967	1	86.962	86.462	87.462	-0.0056229								0	0	0	0.36944	1	22895	22895		6.6304	1.2277	1		+		29956	14665	17332	17333	36888	36888					0.18738574229632832
MRVVRKKALL	10	Unmodified	_MRVVRKKALL_					0	0	0			REV__nc|ENSG00000110148|P32239-3|CCKBR	REV__nc|ENSG00000110148|P32239-3|CCKBR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2784118652344	3	405.269032	1212.78527	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.176	1	87.171	86.671	87.671	-0.0056229								0	0	0	0.36944	1	22959	22959		6.6304	3.5581	1		+		29957	14665	17332	17333	36889	36889					0.18738574229632832
MRVYVNYVRIY	11	Unmodified	_MRVYVNYVRIY_					0	0	0			REV__nc|ENSG00000027697|P15260-2|IFNGR1	REV__nc|ENSG00000027697|P15260-2|IFNGR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.26715087890625	3	492.599107	1474.77549	0.29404	0.00014485	-0.89671	-0.00044172	-0.60267	-0.00029687	492.59863586881096	21.993	0.40312	21.993	21.819	22.222	0					19	14	2	0	0	0	0.3333	1	2999	2999		1.3296	0	1	98101	+		29958	13485	17333	17334	36890	36890					0.05709341433566806
MRYGRSRH	8	Unmodified	_MRYGRSRH_					0	0	0		ENST00000264963.8_2_2:97372767-97372965:-|nuORF	ENST00000264963.8_2_2:97372767-97372965:-|nuORF	ENST00000264963.8_2_2:97372767-97372965:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.922119140625	2	531.772334	1061.53011	0.17487	9.2992E-05	0.59029	0.0003139	0.76516	0.00040689	532.2726910912157	13.958	0.17654	13.958	13.847	14.024	0					7	5	2	0	0	0	0.34353	1	554	554		4.756	0	1	11833			29959	9035	17334	17335	36891	36891					0.0018110581409018778
MSAMSQLAK	9	Unmodified	_MSAMSQLAK_					0	0	0			REV__ENSG00000007866|ENST00000338863|TEAD3	REV__ENSG00000007866|ENST00000338863|TEAD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2550354003906	2	483.740988	965.467423	0.074775	3.6172E-05	-1.9412	-0.00093903	-1.8664	-0.00090286	483.7394703004798	23.339	0.33	23.251	23.077	23.407	-0.087608					18	11	2	0	0	0	0.20626	1	3399	3399		22.736	0.98964	1	28906	+		29960	13390	17335	17336	36892	36892					-0.016692210889459602
MSAPRLLI	8	Unmodified	_MSAPRLLI_					0	0	0		nc|ENSG00000206531|Q6Q8B3|CD200R1L	nc|ENSG00000206531|Q6Q8B3|CD200R1L	nc|ENSG00000206531|Q6Q8B3|CD200R1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7716369628906	2	450.770406	899.526258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73	1	73	72.5	73.5	0								0	0	0	0.30279	1	18637	18637		28.487	0	1				29961	12918	17336	17337	36893	36893					0.07247623267699055
MSEELCLLTSL	11	Unmodified	_MSEELCLLTSL_					0	0	0			REV__ENST00000586637.5_1_19:44989347-45004442:-|nuORF	REV__ENST00000586637.5_1_19:44989347-45004442:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5502014160156	3	413.538414	1237.59341	0.12522	5.1785E-05	0.43531	0.00018002	0.56053	0.0002318	413.53867951184003	22.487	0.4375	22.4	22.191	22.628	-0.087608					26	15	2	0	0	0	0.38623	1	3148	3148		2.6312	0	1	75683	+		29962	22512	17337	17338	36894	36894					-0.015881790941875806
MSGKPLPL	8	Unmodified	_MSGKPLPL_					0	0	0			REV__ENSG00000187553|ENST00000651965|CYP26C1	REV__ENSG00000187553|ENST00000651965|CYP26C1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.75128173828125	2	421.743857	841.47316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.511	1	66.595	66.095	67.095	0.083832								0	0	0	0.35466	1	16644	16644		12.532	0	1		+		29963	18508	17338	17339	36895	36895					0.04608245485007956
MSGKPLPL	8	Unmodified	_MSGKPLPL_					0	0	0			REV__ENSG00000187553|ENST00000651965|CYP26C1	REV__ENSG00000187553|ENST00000651965|CYP26C1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7512512207031	2	421.743857	841.47316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.865	1	66.851	66.351	67.351	-0.013588								0	0	0	0.34229	1	16747	16747		18.135	0	1		+		29964	18508	17338	17339	36896	36896					0.04608245485007956
MSGRSPLLPR	10	Unmodified	_MSGRSPLLPR_					0	0	0		ENSG00000175029|ENST00000309035|CTBP2	ENSG00000175029|ENST00000309035|CTBP2	ENSG00000175029|ENST00000309035|CTBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3134765625	2	557.3135	1112.61245	0.19009	0.00010594	-0.25966	-0.00014471	-0.069571	-3.8773E-05	557.3133766441349	23.968	0.69592	23.968	23.699	24.395	0					38	23	2	0	0	0	0.41085	1	3629	3629		1.4819	0.79152	1	116370			29965	6834	17339	17340	36897	36897					0.06064583102374854
MSIKRELVE	9	Unmodified	_MSIKRELVE_					0	0	0			REV__ENST00000463428.5_1_1:28696332-28793284:+|nuORF	REV__ENST00000463428.5_1_1:28696332-28793284:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8300170898438	2	552.807716	1103.60088	0.60183	0.00033269	0.43962	0.00024303	1.0415	0.00057572	552.8078786704418	77.214	0.78117	77.269	77.06	77.841	0.055412					49	27	3	0	0	0	0.26612	1	19909	19909		13.906	0.29118	1	341230	+		29966	18919	17340	17341	36898	36898					0.05322341288410826
MSIPRTVL	8	Unmodified	_MSIPRTVL_					0	0	0		ENST00000443509.6_1_9:79323567-79323615:-|nuORF	ENST00000443509.6_1_9:79323567-79323615:-|nuORF	ENST00000443509.6_1_9:79323567-79323615:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.767822265625	2	458.767863	915.521173	0.061585	2.8253E-05	0.41953	0.00019247	0.48112	0.00022072	458.7678463749245	40.829	1.503	40.829	39.968	41.471	0					103	54	3	0	0	0	0.27124	1	8694	8694		34.102	3.4659	1	1413300			29967	10567	17341	17342	36899	36899					0.06003319405044749
MSIPRTVL	8	Unmodified	_MSIPRTVL_					0	0	0		ENST00000443509.6_1_9:79323567-79323615:-|nuORF	ENST00000443509.6_1_9:79323567-79323615:-|nuORF	ENST00000443509.6_1_9:79323567-79323615:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7679443359375	2	458.767863	915.521173	0.23779	0.00010909	0.27891	0.00012795	0.5167	0.00023704	458.7677854724569	40.656	1.7387	40.749	39.72	41.459	0.09267					119	63	3	0	0	0	0.27124	1	8652	8652		34.102	1.9855	1	1499400			29968	10567	17341	17342	36900	36900					0.06003319405044749
MSIPRTVL	8	Unmodified	_MSIPRTVL_					0	0	0		ENST00000443509.6_1_9:79323567-79323615:-|nuORF	ENST00000443509.6_1_9:79323567-79323615:-|nuORF	ENST00000443509.6_1_9:79323567-79323615:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7680358886719	2	458.767863	915.521173	0.14068	6.4537E-05	0.40264	0.00018472	0.54332	0.00024926	458.7678322759644	40.611	1.7246	40.711	39.676	41.4	0.099407					124	62	3	0	0	0	0.27124	1	8627	8627		34.102	1.6488	1	1634600			29969	10567	17341	17342	36901	36901					0.06003319405044749
MSKAINWHAVF	11	Unmodified	_MSKAINWHAVF_					0	0	0			REV__nc|ENSG00000108469|O94762-2|RECQL5	REV__nc|ENSG00000108469|O94762-2|RECQL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7798767089844	3	435.225381	1302.65431	-0.2587	-0.00011259	-0.38208	-0.00016629	-0.64078	-0.00027888	435.2253573508745	35.525	0.48067	35.611	35.45	35.931	0.08625					23	16	2	0	0	0	0.33236	1	7080	7080		2.4348	0	1	232860	+		29970	14595	17342	17343	36902	36902					0.015091387909023979
MSKETSSKTF	10	Unmodified	_MSKETSSKTF_					0	0	0		ADGRG4|p.K2380Nfs*2|1|0.45|ENSG00000156920|chrX:136359446-136359446|A/-|frameshift_variant;nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ENSG00000156920|ENST00000394143|ADGRG4	ADGRG4|p.K2380Nfs*2|1|0.45|ENSG00000156920|chrX:136359446-136359446|A/-|frameshift_variant	ADGRG4|p.K2380Nfs*2|1|0.45|ENSG00000156920|chrX:136359446-136359446|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.2872924804688	2	573.278989	1144.54342	-0.078963	-4.5268E-05	-4.1463	-0.002377	-4.2253	-0.0024223	573.7786759067754	38.678	0.25096	38.678	38.46	38.711	0					10	8	2	0	0	0	0.14021	1	8089	8089		39.95	1.7741	1	54975			29971	17	17343	17344	36903	36903					-0.023065457078246254
MSPLRALI	8	Unmodified	_MSPLRALI_					0	0	0			REV__nc|ENSG00000126860|P22794-2|EVI2A	REV__nc|ENSG00000126860|P22794-2|EVI2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.77166748046875	2	450.770406	899.526258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.043	1	73.014	72.514	73.514	-0.029305								0	0	0	0.31323	1	18635	18635		26.884	0.54238	1		+		29972	22982	17344	17345	36904	36904					0.07247623267676317
MSQYGHFPF	9	Unmodified	_MSQYGHFPF_					0	0	0		ENSG00000197993|ENST00000355265|KEL;ENST00000479768.6_1_7:142643674-142659293:-|nuORF;ENST00000494148.1_1_7:142651443-142655450:-|nuORF	ENSG00000197993|ENST00000355265|KEL	ENSG00000197993|ENST00000355265|KEL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2589111328125	2	557.244752	1112.47495	0.38554	0.00021484	-2.7063	-0.0015081	-2.3208	-0.0012932	557.7431361440566	79.579	0.53746	79.579	79.205	79.742	0					47	20	3	0	0	0	0.21303	1	20620	20620		21.747	4.6338	1	235690			29973	8022	17345	17346	36905	36905					-0.07678745497014461
MSQYGHFPF	9	Unmodified	_MSQYGHFPF_					0	0	0		ENSG00000197993|ENST00000355265|KEL;ENST00000479768.6_1_7:142643674-142659293:-|nuORF;ENST00000494148.1_1_7:142651443-142655450:-|nuORF	ENSG00000197993|ENST00000355265|KEL	ENSG00000197993|ENST00000355265|KEL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7423706054688	2	557.244752	1112.47495	0.36002	0.00020062	-1.6462	-0.00091731	-1.2861	-0.0007167	557.7434650262626	79.601	0.82166	79.572	79.182	80.004	-0.028931					50	31	3	0	0	0	0.33018	1	20582	20582		4.3292	0.73274	1	173440			29974	8022	17345	17346	36906	36906					-0.07678745497014461
MSRLQVLRLI	10	Unmodified	_MSRLQVLRLI_					0	0	0		ENST00000264607.8_1_2:239355144-239355219:+|nuORF	ENST00000264607.8_1_2:239355144-239355219:+|nuORF	ENST00000264607.8_1_2:239355144-239355219:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.7185363769531	3	410.256792	1227.74855	0.074204	3.0443E-05	1.3836	0.00056763	1.4578	0.00059808	410.25734850005136	82.58	0.41978	82.58	82.313	82.733	0					37	15	4	0	0	0	0.32167	1	21598	21598		0.62683	0	1	161950			29975	9028	17346	17347	36907	36907					0.14378277613036516
MSRLQVLRLI	10	Unmodified	_MSRLQVLRLI_					0	0	0		ENST00000264607.8_1_2:239355144-239355219:+|nuORF	ENST00000264607.8_1_2:239355144-239355219:+|nuORF	ENST00000264607.8_1_2:239355144-239355219:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.7186584472656	3	410.256792	1227.74855	0.29186	0.00011974	1.5097	0.00061935	1.8015	0.00073908	410.2573939129684	83.273	0.34518	83.252	83.078	83.423	-0.020584					19	13	2	0	0	0	0.32167	1	21726	21726		0.62683	0	1	145690			29976	9028	17346	17347	36908	36908					0.14378277613036516
MSSLNFVLK	9	Unmodified	_MSSLNFVLK_					0	0	0		ENST00000456859.2_1_12:57066766-57082127:-|nuORF	ENST00000456859.2_1_12:57066766-57082127:-|nuORF	ENST00000456859.2_1_12:57066766-57082127:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7864990234375	2	519.786253	1037.55795	0.65168	0.00033873	-0.22781	-0.00011841	0.42387	0.00022032	519.7861345915079	51.045	0.93747	51.045	50.792	51.729	0					60	34	2	0	0	0	0.03069	1	11884	11884		60.074	0	1	1481400			29977	10699	17347	17348	36909	36909					0.040675712309621304
MSSRSSTLP	9	Unmodified	_MSSRSSTLP_					0	0	0			REV__nc|ENSG00000048028|Q96RU2-3|USP28	REV__nc|ENSG00000048028|Q96RU2-3|USP28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.25518798828125	2	483.239667	964.46478	0.0032387	1.5651E-06	-1.6516	-0.00079813	-1.6484	-0.00079656	483.2384642266078	23.221	0.43588	23.221	23.077	23.513	0					29	14	3	0	0	0	0.30623	1	3417	3417		7.9102	0	1	50054	+		29978	13547	17348	17349	36910	36910					-0.018873532222642098
MSTSFKMFLDN	11	Unmodified	_MSTSFKMFLDN_					0	0	0		ENST00000494760.1_1_2:9002596-9008596:-|nuORF;ENST00000486484.5_1_2:9002434-9143743:-|nuORF;ENSG00000143797|ENST00000305997|MBOAT2	ENST00000494760.1_1_2:9002596-9008596:-|nuORF	ENST00000494760.1_1_2:9002596-9008596:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.8862609863281	3	440.870275	1319.58899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.687	1	13.687	13.187	14.187	0								0	0	0	0.36872	1	499	499		4.1166	0.52395	1				29979	4546	17349	17350	36911	36911					-0.058016435170884506
MSYQSPSPSRL	11	Unmodified	_MSYQSPSPSRL_					0	0	0			REV__ENSG00000198842|ENST00000361200|STYXL2	REV__ENSG00000198842|ENST00000361200|STYXL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.770751953125	3	418.204534	1251.59177	-1.1859	-0.00049596	1.2383	0.00051787	0.052377	2.1904E-05	418.53797629831297	34.927	0.57929	35.002	34.739	35.318	0.075306					73	20	5	0	0	0	0.33025	1	6910	6910		9.2438	0	1	519880	+		29980	18875	17350	17351	36912	36912					-0.02396052067911114
MTATGTLHSI	10	Unmodified	_MTATGTLHSI_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.3099975585938	2	516.263142	1030.51173	0.48292	0.00024931	-1.5432	-0.00079669	-1.0603	-0.00054737	516.2625043536156	79.35	1.7921	79.35	78.005	79.797	0					108	70	3	0	0	0	0.30586	1	20259	20259		13.906	0.86358	1	522650	+		29981	18137	17351	17352	36913	36913					-0.002304936710970651
MTATGTLHSI	10	Unmodified	_MTATGTLHSI_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	516.263142	1030.51173	0.39393	0.00020337	-1.6009	-0.00082647	-1.2069	-0.0006231	516.2624483948107	79.314	2.1208	79.375	77.93	80.051	0.061409	0.014017	-0.00010972	NaN	9.3831	142	84	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	512240	+		29982	18137	17351	17352							-0.002304936710970651
MTATGTLHSI	10	Unmodified	_MTATGTLHSI_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	516.263142	1030.51173	0.40027	0.00020665	-1.3414	-0.00069253	-0.94116	-0.00048589	516.2625203932777	79.388	1.2584	79.359	78.799	80.058	-0.028923	-0.0025289	0.00015816	NaN	9.3831	98	50	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519610	+		29983	18137	17351	17352							-0.002304936710970651
MTAWLISL	8	Unmodified	_MTAWLISL_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1;PKHD1|p.A1797Gfs*9|1|0.23|ENSG00000170927|chr6:52017624-52017625|-/G|frameshift_variant;PKHD1|p.M238Sfs*14|1|0.06|ENSG00000170927|chr6:52069523-52069524|-/TTCTTGA|frameshift_variant	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7442321777344	2	467.756964	933.499375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.518	1	38.518	38.018	39.018	0								0	0	0	0.36336	1	8038	8038		8.5933	0.68312	1				29984	6498	17352	17353	36914	36914					0.029965146565132272
MTIAAKRMRLY	11	Unmodified	_MTIAAKRMRLY_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.93438720703125	3	451.921304	1352.74208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.634	1	54.698	54.198	55.198	0.063202								0	0	0	0.35732	1	12989	12989		6.6235	1.9075	1		+		29985	18742	17353	17354	36915	36915					0.0798201639004219
MTIIVPIG	8	Unmodified	_MTIIVPIG_					0	0	0		nc|ENSG00000104888|Q9P2U7-2|SLC17A7;nc|ENSG00000104888|Q9P2U7-3|SLC17A7;ENSG00000104888|ENST00000221485|SLC17A7;ENSG00000091664|ENST00000263160|SLC17A6	nc|ENSG00000104888|Q9P2U7-2|SLC17A7	nc|ENSG00000104888|Q9P2U7-2|SLC17A7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.57220458984375	2	422.254057	842.493561	-0.18212	-7.69E-05	0.68903	0.00029095	0.50692	0.00021405	422.2543095570117	45.884	0.53082	45.944	45.619	46.15	0.059834					25	18	2	0	0	0	0.3439	1	10230	10230		2.8892	2.8892	1	408470			29986	1408	17354	17355	36916	36916					0.06601416144826544
MTKAADPR	8	Unmodified	_MTKAADPR_					0	0	0		nc|ENSG00000171302|Q8WVQ1-2|CANT1;nc|ENSG00000171302|Q8WVQ1-3|CANT1;ENSG00000171302|ENST00000392446|CANT1	nc|ENSG00000171302|Q8WVQ1-2|CANT1	nc|ENSG00000171302|Q8WVQ1-2|CANT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.9150695800781	2	445.231645	888.448736	0.37399	0.00016651	-0.55056	-0.00024513	-0.17657	-7.8613E-05	445.23128993535187	20.675	0.71314	20.675	20.395	21.108	0					55	24	3	0	0	0	0.3408	1	2739	2739		14.838	0	1	187440			29987	12835	17355	17356	36917	36917					4.985331486295763E-05
MTKAGRRGT	9	Unmodified	_MTKAGRRGT_					0	0	0			REV__ENST00000330619.12_1_19:57079226-57080143:+|nuORF	REV__ENST00000330619.12_1_19:57079226-57080143:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2822570800781	2	489.269093	976.523633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.27	1	112.27	111.77	112.77	0								0	0	0	0.2489	1	29187	29187		6.7232	1.4925	1		+		29988	20038	17356	17357	36918	36918					0.034431678627242945
MTLFLTAPK	9	Unmodified	_MTLFLTAPK_					0	0	0		ENST00000465792.1_1_3:186503888-186504086:+|nuORF	ENST00000465792.1_1_3:186503888-186504086:+|nuORF	ENST00000465792.1_1_3:186503888-186504086:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2902526855469	2	511.291171	1020.56779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.77	1	115.77	115.27	116.27	0								0	0	0	0.26334	1	29992	29992		2.0598	0	1				29989	10804	17357	17358	36919	36919					0.05832759236329821
MTLFYILT	8	Unmodified	_MTLFYILT_					0	0	0			REV__ENSG00000176540|ENST00000319813|OR4C5	REV__ENSG00000176540|ENST00000319813|OR4C5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.3033142089844	2	501.272447	1000.53034	0.42535	0.00021322	2.3615	0.0011838	2.7869	0.001397	501.27327653775836	72.083	0.43362	72.055	71.873	72.306	-0.027275					22	15	2	0	0	0	0.28235	1	18347	18347		38.151	13.477	1	93322	+		29990	17941	17358	17359	36920	36920					0.03009667970729879
MTLMVFLFK	9	2 Oxidation (M)	_M(Oxidation (M))TLM(Oxidation (M))VFLFK_		M(1)TLM(1)VFLFK		M(150)TLM(150)VFLFK	0	0	2		ENST00000553924.5_1_14:65879917-65922398:+|nuORF;ENST00000360689.9_1_14:65878672-65922398:+|nuORF;ENST00000556518.5_2_14:65878628-65922401:+|nuORF	ENST00000553924.5_1_14:65879917-65922398:+|nuORF	ENST00000553924.5_1_14:65879917-65922398:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3062744140625	2	581.305964	1160.59737	0.25879	0.00015044	0.75921	0.00044133	1.018	0.00059177	581.3060322291796	67.297	1.1057	67.297	66.6	67.706	0					92	38	3	0	0	0	6.1526E-05	3	16892	16892;16938;16994		147.06	101.04	1	1266500			29991	9683	17359	17360	36921;36922;36923	36921		930;931			0.02349955190197761
MTLMVFLFK	9	2 Oxidation (M)	_M(Oxidation (M))TLM(Oxidation (M))VFLFK_		M(1)TLM(1)VFLFK		M(160)TLM(160)VFLFK	0	0	2		ENST00000553924.5_1_14:65879917-65922398:+|nuORF;ENST00000360689.9_1_14:65878672-65922398:+|nuORF;ENST00000556518.5_2_14:65878628-65922401:+|nuORF	ENST00000553924.5_1_14:65879917-65922398:+|nuORF	ENST00000553924.5_1_14:65879917-65922398:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.3060913085938	2	581.305964	1160.59737	0.25245	0.00014675	0.90429	0.00052567	1.1567	0.00067242	581.3061302814142	67.203	1.0371	67.281	66.566	67.603	0.078041					97	36	4	0	0	0	5.0285E-07	3	16885	16834;16885;16936		160.52	114.5	1	1157200			29992	9683	17359	17360	36924;36925;36926	36925		930;931			0.02349955190197761
MTLMVFLFK	9	2 Oxidation (M)	_M(Oxidation (M))TLM(Oxidation (M))VFLFK_		M(1)TLM(1)VFLFK		M(150)TLM(150)VFLFK	0	0	2		ENST00000553924.5_1_14:65879917-65922398:+|nuORF;ENST00000360689.9_1_14:65878672-65922398:+|nuORF;ENST00000556518.5_2_14:65878628-65922401:+|nuORF	ENST00000553924.5_1_14:65879917-65922398:+|nuORF	ENST00000553924.5_1_14:65879917-65922398:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.3060913085938	2	581.305964	1160.59737	0.14768	8.5849E-05	1.072	0.00062319	1.2197	0.00070903	581.3061676658278	67.327	0.90812	67.31	66.736	67.644	-0.016296					96	31	4	0	0	0	6.1526E-05	3	16900	16848;16900;16946		147.06	109.09	1	1271500			29993	9683	17359	17360	36927;36928;36929	36928		930;931			0.02349955190197761
MTLPATTLTL	10	Unmodified	_MTLPATTLTL_					0	0	0		nc|ENSG00000211891|P01854-1|IGHE;nc|ENSG00000211891|P01854-3|IGHE;nc|ENSG00000211891|P01854|IGHE	nc|ENSG00000211891|P01854-1|IGHE	nc|ENSG00000211891|P01854-1|IGHE	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3157958984375	2	531.299193	1060.58383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.42	1	92.42	91.92	92.92	0								0	0	0	0.38126	1	24578	24578		1.6526	0.17072	1				29994	12933	17360	17361	36930	36930					0.05596420682581993
MTLSHVLV	8	Unmodified	_MTLSHVLV_					0	0	0		ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2701110839844	2	450.254588	898.494624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.309	1	78.367	77.867	78.867	0.058151								0	0	0	0.36169	1	20244	20244		9.3474	0.75416	1				29995	672	17361	17362	36931	36931					0.04131630513734308
MTMAQPYVVF	10	Unmodified	_MTMAQPYVVF_					0	0	0			REV__ENSG00000011083|ENST00000230671|SLC6A7	REV__ENSG00000011083|ENST00000230671|SLC6A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.7854614257812	2	593.785395	1185.55624	0.43112	0.00025599	-0.0046872	-2.7832E-06	0.42643	0.00025321	593.785241463846	82.179	2.4243	82.248	81.44	83.865	0.068993					179	99	2	0	0	0	0.38515	1	21371	21371		6.2058	1.4498	1	804010	+		29996	13424	17362	17363	36932	36932					-0.029118058493168064
MTRILHST	8	Unmodified	_MTRILHST_					0	0	0		nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.76043701171875	2	479.760569	957.506586	0.040795	1.9572E-05	-0.055068	-2.6419E-05	-0.014273	-6.8476E-06	479.7605068164299	15.623	0.64486	15.558	15.391	16.036	-0.064413					37	21	2	0	0	0	0.344	1	1134	1134		2.5775	0	1	126830			29997	8721	17363	17364	36933	36933					0.02613247256908835
MTRKKIFW	8	Unmodified	_MTRKKIFW_					0	0	0		ENST00000254250.7_1_8:42693388-42694372:-|nuORF	ENST00000254250.7_1_8:42693388-42694372:-|nuORF	ENST00000254250.7_1_8:42693388-42694372:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7959594726562	2	555.318054	1108.62156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115	1	115	114.5	115.5	0								0	0	0	0.37992	1	29816	29816		0.79363	0.10326	1				29998	8916	17364	17365	36934	36934					0.07158976458708821
MTRLQLLSVF	10	Unmodified	_MTRLQLLSVF_					0	0	0		MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|213|3|anti-sense	MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|213|3|anti-sense	MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|213|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.24725341796875	3	403.233765	1206.67946	-0.23596	-9.5147E-05	4.013	0.0016182	3.7771	0.001523	403.23535772779445	33.251	0.24818	33.251	33.145	33.393	0					10	8	2	0	0	0	0.32877	1	6433	6433		16.566	0.29133	1	96106			29999	12532	17365	17366	36935	36935					0.08439193593471828
MTRLQLLSVF	10	Unmodified	_MTRLQLLSVF_					0	0	0		MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|213|3|anti-sense	MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|213|3|anti-sense	MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|213|3|anti-sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	403.233765	1206.67946	-0.27795	-0.00011208	4.4398	0.0017903	4.1618	0.0016782	403.23542872064104	33.083	0.31141	33.138	32.973	33.284	0.055309	-0.05642	0.00016418	NaN	16.566	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85467			30000	12532	17365	17366							0.08439193593471828
MTSAKHPEDKI	11	Unmodified	_MTSAKHPEDKI_					0	0	0		ENST00000395246.5_1_5:130730136-130730241:+|nuORF	ENST00000395246.5_1_5:130730136-130730241:+|nuORF	ENST00000395246.5_1_5:130730136-130730241:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.2989501953125	2	628.818812	1255.62307	0.087336	5.4919E-05	0.85849	0.00053984	0.94583	0.00059476	628.8193945967424	66.957	0.48278	67.041	66.877	67.36	0.083832					25	16	2	0	0	0	0.33037	1	16733	16733		7.609	0	1	218680			30001	10085	17366	17367	36936	36936					0.005485209661628687
MTSAKHPEDKI	11	Unmodified	_MTSAKHPEDKI_					0	0	0		ENST00000395246.5_1_5:130730136-130730241:+|nuORF	ENST00000395246.5_1_5:130730136-130730241:+|nuORF	ENST00000395246.5_1_5:130730136-130730241:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	628.818812	1255.62307	0.32312	0.00020318	0.30449	0.00019147	0.62761	0.00039465	628.8190938683557	67.109	0.45903	67.109	66.909	67.368	0	0.0032395	-0.00025028	NaN	7.609	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231160			30002	10085	17366	17367							0.005485209661628687
MTSALPIIQK	10	Oxidation (M)	_M(Oxidation (M))TSALPIIQK_		M(1)TSALPIIQK		M(210)TSALPIIQK	0	0	1		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.318115234375	2	559.317917	1116.62128	0.22942	0.00012832	0.31033	0.00017357	0.53975	0.00030189	559.3178643387308	42.838	1.9223	42.838	42.221	44.143	0					175	70	3	0	0	0	2.3869E-20	4	9365	9323;9365;9408;9463		209.87	139.54	1	12274000			30003	4787	17367	17368	36937;36938;36939;36940	36938		596			0.06763511948179257
MTSALPIIQK	10	Oxidation (M)	_M(Oxidation (M))TSALPIIQK_		M(1)TSALPIIQK		M(200)TSALPIIQK	0	0	1		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.318115234375	2	559.317917	1116.62128	0.26019	0.00014553	0.15103	8.4474E-05	0.41122	0.00023	559.3178491165753	42.742	1.5212	42.827	42.352	43.873	0.085201					172	55	4	0	0	0	6.6222E-14	5	9333	9286;9333;9378;9428;9456		195.45	133.85	1	13070000			30004	4787	17367	17368	36941;36942;36943;36944;36945	36942		596			0.06763511948179257
MTSALPIIQK	10	Oxidation (M)	_M(Oxidation (M))TSALPIIQK_		M(1)TSALPIIQK		M(200)TSALPIIQK	0	0	1		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.318115234375	2	559.317917	1116.62128	0.08205	4.5892E-05	0.2343	0.00013105	0.31635	0.00017694	559.3179548564478	42.702	1.717	42.793	42.26	43.977	0.091362					153	62	4	0	0	0	6.6222E-14	6	9255	9255;9295;9338;9380;9432;9456		195.45	133.85	1	12996000			30005	4787	17367	17368	36946;36947;36948;36949;36950;36951	36946		596			0.06763511948179257
MTSLCSLIP	9	Unmodified	_MTSLCSLIP_					0	0	0		ENST00000540872.5_1_10:46224424-46224466:+|nuORF;ENST00000492914.1_1_10:51829421-51840545:+|nuORF	ENST00000540872.5_1_10:46224424-46224466:+|nuORF	ENST00000540872.5_1_10:46224424-46224466:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7713623046875	2	482.745739	963.476925	0.27722	0.00013382	-1.5899	-0.00076752	-1.3127	-0.00063369	482.7445385887365	68.872	0.61609	68.853	68.68	69.296	-0.019157					40	21	3	0	0	0	0.21905	1	17473	17473		23.148	1.4018	1	141980			30006	11195	17368	17369	36952	36952					-0.0062745280343960985
MTSLCSLIP	9	Unmodified	_MTSLCSLIP_					0	0	0		ENST00000540872.5_1_10:46224424-46224466:+|nuORF;ENST00000492914.1_1_10:51829421-51840545:+|nuORF	ENST00000540872.5_1_10:46224424-46224466:+|nuORF	ENST00000540872.5_1_10:46224424-46224466:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	482.745739	963.476925	0.25659	0.00012387	-1.8315	-0.00088416	-1.5749	-0.00076029	482.744439571727	68.887	0.72362	68.887	68.616	69.339	0	0.01551	0.00040102	NaN	23.148	41	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244740			30007	11195	17368	17369							-0.0062745280343960985
MTSLCSLIP	9	Unmodified	_MTSLCSLIP_					0	0	0		ENST00000540872.5_1_10:46224424-46224466:+|nuORF;ENST00000492914.1_1_10:51829421-51840545:+|nuORF	ENST00000540872.5_1_10:46224424-46224466:+|nuORF	ENST00000540872.5_1_10:46224424-46224466:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	482.745739	963.476925	0.31674	0.0001529	-2.636	-0.0012725	-2.3192	-0.0011196	482.7444287095481	68.802	0.48212	68.874	68.618	69.1	0.071938	0.0026851	-0.00037567	NaN	23.148	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227260			30008	11195	17368	17369							-0.0062745280343960985
MTTGRAGPV	9	Unmodified	_MTTGRAGPV_					0	0	0		ENST00000356309.7_1_7:158497458-158497509:-|nuORF	ENST00000356309.7_1_7:158497458-158497509:-|nuORF	ENST00000356309.7_1_7:158497458-158497509:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.9150085449219	2	445.231645	888.448736	0.50467	0.00022469	-0.40736	-0.00018137	0.097309	4.3325E-05	445.23138262704236	20.76	0.84295	20.707	20.418	21.261	-0.05291					54	29	2	0	0	0	0.24688	1	2755	2755		14.838	3.198	1	237500			30009	9620	17369	17370	36953	36953					4.985331497664447E-05
MTVRELGIGGG	11	Unmodified	_MTVRELGIGGG_					0	0	0			REV__ENST00000478212.5_1_2:136664888-136669084:-|nuORF	REV__ENST00000478212.5_1_2:136664888-136669084:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.289794921875	2	545.289691	1088.56483	0.116	6.3251E-05	-0.029792	-1.6245E-05	0.086203	4.7006E-05	545.2898203921526	12.686	0.62052	12.686	12.498	13.118	0					58	21	4	0	0	0	0.43149	1	237	237		7.1017	0.89594	1	704270	+		30010	14899	17370	17371	36954	36954					0.024088841115371906
MTVSAPPLSV	10	Unmodified	_MTVSAPPLSV_					0	0	0			REV__ENSG00000276644|ENST00000613252|DACH1	REV__ENSG00000276644|ENST00000613252|DACH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2582092285156	2	501.270435	1000.52632	0.71006	0.00035593	0.14813	7.4251E-05	0.85819	0.00043018	501.2701662565105	77.726	2.6168	77.726	77.256	79.872	0					150	101	3	0	0	0	0.34325	1	20720	20720		13.906	3.7227	1	1039700	+		30011	19339	17371	17372	36955	36955					0.026075784770227983
MTVSAPPLSV	10	Unmodified	_MTVSAPPLSV_					0	0	0			REV__ENSG00000276644|ENST00000613252|DACH1	REV__ENSG00000276644|ENST00000613252|DACH1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2582702636719	2	501.270435	1000.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.766	1	79.827	79.327	80.327	0.061417								0	0	0	0.35216	1	20689	20689		13.906	2.7916	1		+		30012	19339	17371	17372	36956	36956					0.026075784770227983
MTYPRHLF	8	Unmodified	_MTYPRHLF_					0	0	0		ENST00000455810.5_1_10:6622727-6624138:+|nuORF	ENST00000455810.5_1_10:6622727-6624138:+|nuORF	ENST00000455810.5_1_10:6622727-6624138:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.796142578125	2	532.770937	1063.52732	0.53694	0.00028606	1.5239	0.00081188	2.0608	0.0010979	532.7723134780919	28.938	0.30659	28.938	28.699	29.006	0					13	10	2	0	0	0	0.34247	1	5095	5095		8.5933	0	1	71054			30013	10690	17372	17373	36957	36957					-0.0019016236342395132
MVARAIYFM	9	Unmodified	_MVARAIYFM_					0	0	0			REV__ENSG00000119457|ENST00000374228|SLC46A2	REV__ENSG00000119457|ENST00000374228|SLC46A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.3046875	2	551.282823	1100.55109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.346	1	20.346	19.846	20.846	0								0	0	0	0.23367	1	2510	2510		11.64	3.7301	1		+		30014	15041	17373	17374	36958	36958					0.004839350787506191
MVAVATLPVR	10	Unmodified	_MVAVATLPVR_					0	0	0			REV__nc|ENSG00000167716|Q562E7-2|WDR81	REV__nc|ENSG00000167716|Q562E7-2|WDR81	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8143310546875	2	528.815344	1055.61614	0.31802	0.00016817	0.35417	0.00018729	0.67219	0.00035546	528.8152824606836	41.252	0.59651	41.252	40.875	41.471	0					36	19	2	0	0	0	0.3641	1	8875	8875		10.074	1.3285	1	332880	+		30015	17407	17374	17375	36959	36959					0.09055252876260056
MVDWELSRL	9	Unmodified	_MVDWELSRL_					0	0	0		ENST00000474199.5_1_19:48800699-48823634:-|nuORF;ENSG00000105479|ENST00000674294|ODAD1	ENST00000474199.5_1_19:48800699-48823634:-|nuORF	ENST00000474199.5_1_19:48800699-48823634:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.8145141601562	2	574.792066	1147.56958	0.11202	6.4388E-05	2.0666	0.0011879	2.1786	0.0012522	574.7932556915738	24.013	0.39071	24.013	23.829	24.22	0					18	13	2	0	0	0	0.26168	1	3573	3573		1.8442	0.19162	1	50865			30016	1985	17375	17376	36960	36960					0.0016976825429537712
MVFSFIWEF	9	Unmodified	_MVFSFIWEF_					0	0	0		ENST00000454389.5_2_3:27433241-27433286:-|nuORF	ENST00000454389.5_2_3:27433241-27433286:-|nuORF	ENST00000454389.5_2_3:27433241-27433286:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.3016967773438	2	603.288628	1204.5627	0.49316	0.00029752	0.36668	0.00022122	0.85985	0.00051874	603.288906887934	55.571	0.67188	55.552	55.319	55.991	-0.019077					36	24	2	0	0	0	0.21905	1	13294	13294		23.148	2.6948	1	518170			30017	10679	17376	17377	36961	36961					-0.031395446262649784
MVGPTLPGY	9	Oxidation (M)	_M(Oxidation (M))VGPTLPGY_		M(1)VGPTLPGY		M(42)VGPTLPGY	0	0	1		ENSG00000125618|ENST00000429538|PAX8;nc|ENSG00000125618|Q06710-2|PAX8;ENST00000485840.1_1_2:113984585-113993007:-|nuORF	ENSG00000125618|ENST00000429538|PAX8	ENSG00000125618|ENST00000429538|PAX8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.73626708984375	2	475.736228	949.457904	0.78494	0.00037343	-0.52841	-0.00025138	0.25654	0.00012204	475.73595147267184	56.061	0.77601	56.061	55.594	56.37	0					46	27	2	0	0	0	0.079066	1	13409	13409		42.095	11.87	1	1048800			30018	3217	17377	17378	36962	36962		410			-0.018846661028192102
MVGPTLPGY	9	Oxidation (M)	_M(Oxidation (M))VGPTLPGY_		M(1)VGPTLPGY		M(51)VGPTLPGY	0	0	1		ENSG00000125618|ENST00000429538|PAX8;nc|ENSG00000125618|Q06710-2|PAX8;ENST00000485840.1_1_2:113984585-113993007:-|nuORF	ENSG00000125618|ENST00000429538|PAX8	ENSG00000125618|ENST00000429538|PAX8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7361145019531	2	475.736228	949.457904	0.70182	0.00033388	-0.17368	-8.2624E-05	0.52814	0.00025125	475.73593540433905	56.002	0.70509	56.073	55.618	56.323	0.070885					39	25	2	0	0	0	0.055495	1	13362	13362		50.855	24.514	1	801250			30019	3217	17377	17378	36963	36963		410			-0.018846661028192102
MVGPTLPGY	9	Oxidation (M)	_M(Oxidation (M))VGPTLPGY_		M(1)VGPTLPGY		M(42)VGPTLPGY	0	0	1		ENSG00000125618|ENST00000429538|PAX8;nc|ENSG00000125618|Q06710-2|PAX8;ENST00000485840.1_1_2:113984585-113993007:-|nuORF	ENSG00000125618|ENST00000429538|PAX8	ENSG00000125618|ENST00000429538|PAX8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7361145019531	2	475.736228	949.457904	0.71518	0.00034024	-0.56576	-0.00026915	0.14942	7.1082E-05	475.7358038445581	56.133	0.54241	56.114	55.671	56.213	-0.019077					37	19	2	0	0	0	0.079066	1	13380	13380		42.095	11.87	1	650990			30020	3217	17377	17378	36964	36964		410			-0.018846661028192102
MVHVGGLI	8	Unmodified	_MVHVGGLI_					0	0	0		nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML;ENST00000531536.1_1_11:118076554-118083145:-|nuORF;nc|ENSG00000160593|Q86YT9-3|JAML;ENST00000534294.5_1_11:118074137-118095689:-|nuORF	nc|ENSG00000160593|Q86YT9-4|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2378234863281	2	413.236199	824.457844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.473	1	67.457	66.957	67.957	-0.016296								0	0	0	0.3683	1	16932	16932		6.3541	0	1				30021	5472	17378	17379	36965	36965					0.03859378687843673
MVHVGGLI	8	Unmodified	_MVHVGGLI_					0	0	0		nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML;ENST00000531536.1_1_11:118076554-118083145:-|nuORF;nc|ENSG00000160593|Q86YT9-3|JAML;ENST00000534294.5_1_11:118074137-118095689:-|nuORF	nc|ENSG00000160593|Q86YT9-4|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.23809814453125	2	413.236199	824.457844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.632	1	67.616	67.116	68.116	-0.016296								0	0	0	0.3683	1	16981	16981		6.3541	0	1				30022	5472	17378	17379	36966	36966					0.03859378687843673
MVIDLEKQIEK	11	Oxidation (M)	_M(Oxidation (M))VIDLEKQIEK_		M(1)VIDLEKQIEK		M(59)VIDLEKQIEK	0	0	1		nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	nc|ENSG00000117614|O95926-2|SYF2	nc|ENSG00000117614|O95926-2|SYF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.58306884765625	3	454.583011	1360.7272	0.1314	5.9733E-05	-0.30208	-0.00013732	-0.17068	-7.7587E-05	454.582954464215	42.984	0.78867	42.984	42.706	43.494	0					58	28	3	0	0	0	0.028371	1	9421	9421		59.496	48.431	1	1148000			30023	2803	17379	17380	36967	36967		355			0.06126803003007808
MVIDLEKQIEK	11	Oxidation (M)	_M(Oxidation (M))VIDLEKQIEK_		M(1)VIDLEKQIEK		M(59)VIDLEKQIEK	0	0	1		nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	nc|ENSG00000117614|O95926-2|SYF2	nc|ENSG00000117614|O95926-2|SYF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.58294677734375	3	454.583011	1360.7272	0.06368	2.8948E-05	-0.45051	-0.00020479	-0.38683	-0.00017585	454.58292978476237	42.763	0.6804	42.848	42.591	43.271	0.085201					65	24	4	0	0	0	0.028371	1	9322	9322		59.496	41.633	1	1142500			30024	2803	17379	17380	36968	36968		355			0.06126803003007808
MVIDLEKQIEK	11	Oxidation (M)	_M(Oxidation (M))VIDLEKQIEK_		M(1)VIDLEKQIEK		M(58)VIDLEKQIEK	0	0	1		nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	nc|ENSG00000117614|O95926-2|SYF2	nc|ENSG00000117614|O95926-2|SYF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.58294677734375	3	454.583011	1360.7272	-0.035881	-1.6311E-05	-0.3843	-0.00017469	-0.42018	-0.00019101	454.5829777459357	42.699	0.67411	42.79	42.499	43.173	0.091362					60	24	3	0	0	0	0.033944	1	9291	9291		57.885	39.545	1	1064900			30025	2803	17379	17380	36969	36969		355			0.06126803003007808
MVIPKPIH	8	Unmodified	_MVIPKPIH_					0	0	0			REV__nc|ENSG00000152939|Q8N4S9-3|MARVELD2	REV__nc|ENSG00000152939|Q8N4S9-3|MARVELD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7169494628906	2	467.780773	933.546994	-0.1363	-6.3757E-05	1.9721	0.00092252	1.8358	0.00085877	467.78141112958815	16.116	0.26144	16.116	15.981	16.242	0					11	8	2	0	0	0	0.34434	1	1216	1216		0.79363	0.10326	1	18366	+		30026	16603	17380	17381	36970	36970					0.07756213647337518
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8694458007812	2	619.87012	1237.72569	-0.057748	-3.5796E-05	-0.40761	-0.00025266	-0.46535	-0.00028846	619.8694425647374	97.597	0.96609	97.597	97.024	97.991	0					189	100	3	0	0	0	0.40992	1	26038	26038		1.6526	0.17072	1	195890	+		30027	23079	17381	17382	36971	36971					0.11633258495567134
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8688354492188	2	619.87012	1237.72569	-0.14215	-8.8114E-05	-0.96298	-0.00059693	-1.1051	-0.00068504	619.8694176899077	99.192	0.15481	99.192	99.1	99.254	0					25	18	2	0	0	0	0.38233	1	26543	26543		6.7232	5.0705	1	79280	+		30028	23079	17381	17382	36972	36972					0.11633258495567134
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8687744140625	2	619.87012	1237.72569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.7	1	100.7	100.2	101.2	0								0	0	0	0.38126	1	26892	26892		1.6526	0	1		+		30029	23079	17381	17382	36973	36973					0.11633258495567134
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.86962890625	2	619.87012	1237.72569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.04	1	101.04	100.54	101.54	0								0	0	0	0.38126	1	26958	26958		1.6526	0.17072	1		+		30030	23079	17381	17382	36974	36974					0.11633258495567134
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.86962890625	2	619.87012	1237.72569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.2	1	101.2	100.7	101.7	0								0	0	0	0.38126	1	26988	26988		1.6526	0.17072	1		+		30031	23079	17381	17382	36975	36975					0.11633258495567134
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.869384765625	2	619.87012	1237.72569	0.15333	9.5048E-05	-1.0307	-0.00063891	-0.87739	-0.00054387	619.869172024736	90.678	1.0745	90.769	89.847	90.921	0.090675					164	83	3	0	0	0	0.39935	1	23987	23987		3.5965	1.9439	1	272210	+		30032	23079	17381	17382	36976	36976					0.11633258495567134
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8689575195312	2	619.87012	1237.72569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.081	1	95.164	94.664	95.664	0.082779								0	0	0	0.36922	1	25385	25385		6.7232	3.1267	1		+		30033	23079	17381	17382	36977	36977					0.11633258495567134
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8692016601562	2	619.87012	1237.72569	0.29543	0.00018313	-0.33075	-0.00020502	-0.035317	-2.1892E-05	619.8690396100932	94.564	1.5426	94.562	93.798	95.341	-0.0020142					222	130	2	0	0	0	0.38233	1	25056	25056		6.7232	0.09279	1	200390	+		30034	23079	17381	17382	36978	36978					0.11633258495567134
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.869384765625	2	619.87012	1237.72569	0.20348	0.00012613	-0.61477	-0.00038107	-0.41128	-0.00025494	619.8692710448544	97.491	1.1283	97.485	96.973	98.101	-0.0055466					232	118	3	0	0	0	0.38233	1	26136	26136		6.7232	1.4263	1	379940	+		30035	23079	17381	17382	36979	36979					0.11633258495567134
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8687744140625	2	619.87012	1237.72569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.584	1	98.578	98.078	99.078	-0.0068283								0	0	0	0.36922	1	26416	26416		6.7232	1.8262	1		+		30036	23079	17381	17382	36980	36980					0.11633258495567134
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8692626953125	2	619.87012	1237.72569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.099	1	99.093	98.593	99.593	-0.006897								0	0	0	0.36922	1	26549	26549		6.7232	3.1267	1		+		30037	23079	17381	17382	36981	36981					0.11633258495567134
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8694458007812	2	619.87012	1237.72569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.96	1	100.96	100.46	101.46	-0.0054703								0	0	0	0.36922	1	26975	26975		6.7232	0.99131	1		+		30038	23079	17381	17382	36982	36982					0.11633258495567134
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8687744140625	2	619.87012	1237.72569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102	1	102	101.5	102.5	-0.0033646								0	0	0	0.36922	1	27208	27208		6.7232	1.8262	1		+		30039	23079	17381	17382	36983	36983					0.11633258495567134
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	619.87012	1237.72569	-0.14215	-8.8114E-05	-0.96298	-0.00059693	-1.1051	-0.00068504	619.8694176899077	99.192	0.15481	99.192	99.1	99.254	0	0.1225	-0.00031278	NaN	6.7232	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79280	+		30040	23079	17381	17382							0.11633258495567134
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	619.87012	1237.72569	-0.096302	-5.9695E-05	-0.41783	-0.000259	-0.51413	-0.00031869	620.3715340514722	98.896	0.196	98.947	98.815	99.011	0.050888	-0.1225	0.00036307	NaN	6.7232	35	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142640	+		30041	23079	17381	17382							0.11633258495567134
MVKNKLIFFV	10	Unmodified	_MVKNKLIFFV_					0	0	0			REV__nc|ENSG00000169031|Q01955-2|COL4A3	REV__nc|ENSG00000169031|Q01955-2|COL4A3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	619.87012	1237.72569	-0.064533	-4.0002E-05	-0.96447	-0.00059784	-1.029	-0.00063785	619.8694805468405	97.842	0.1089	97.903	97.838	97.947	0.061523	0.24138	-0.00052082	NaN	6.7232	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124340	+		30042	23079	17381	17382							0.11633258495567134
MVKPYLYQ	8	Unmodified	_MVKPYLYQ_					0	0	0		AluSz_dup92746|chr19:8370431-8370725:+|2.024774437320444|0.4902100207963893|2.05|539.0|9|3|sense	AluSz_dup92746|chr19:8370431-8370725:+|2.024774437320444|0.4902100207963893|2.05|539.0|9|3|sense	AluSz_dup92746|chr19:8370431-8370725:+|2.024774437320444|0.4902100207963893|2.05|539.0|9|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.8154907226562	2	521.275521	1040.53649	-0.015834	-8.2536E-06	-2.1191	-0.0011046	-2.1349	-0.0011129	521.2745665713593	13.194	0.42448	13.127	12.905	13.329	-0.067495					19	14	2	0	0	0	0.34408	1	361	361		2.3027	0	1	33514			30043	40	17382	17383	36984	36984					0.01784186202235105
MVKSSLIDDN	10	Unmodified	_MVKSSLIDDN_					0	0	0		nc|ENSG00000130413|Q9BYT3-2|STK33;ENSG00000130413|ENST00000687296|STK33	nc|ENSG00000130413|Q9BYT3-2|STK33	nc|ENSG00000130413|Q9BYT3-2|STK33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2792358398438	2	561.278989	1120.54342	0.39516	0.0002218	1.9241	0.00108	2.3193	0.0013018	561.2793386426864	89.2	1.0912	89.2	88.503	89.594	0					129	53	3	0	0	0	0.32877	2	23588	23588;23635		16.566	2.6598	1	406480			30044	3474	17383	17384	36985;36986	36985					-0.012025457078379986
MVKSSLIDDN	10	Unmodified	_MVKSSLIDDN_					0	0	0		nc|ENSG00000130413|Q9BYT3-2|STK33;ENSG00000130413|ENST00000687296|STK33	nc|ENSG00000130413|Q9BYT3-2|STK33	nc|ENSG00000130413|Q9BYT3-2|STK33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2797241210938	2	561.278989	1120.54342	0.42755	0.00023998	2.2201	0.0012461	2.6477	0.0014861	561.2793404469618	89.156	1.8455	89.247	88.108	89.954	0.090561					191	100	3	0	0	0	0.30656	1	23588	23588		19.626	1.4796	1	350850			30045	3474	17383	17384	36987	36987					-0.012025457078379986
MVKSSLIDDN	10	Unmodified	_MVKSSLIDDN_					0	0	0		nc|ENSG00000130413|Q9BYT3-2|STK33;ENSG00000130413|ENST00000687296|STK33	nc|ENSG00000130413|Q9BYT3-2|STK33	nc|ENSG00000130413|Q9BYT3-2|STK33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2792358398438	2	561.278989	1120.54342	0.35127	0.00019716	2.1463	0.0012047	2.4976	0.0014018	561.2793460020505	89.142	1.5489	89.141	88.133	89.682	-0.00081635					170	79	3	0	0	0	0.32877	1	23625	23625		16.566	2.6598	1	338400			30046	3474	17383	17384	36988	36988					-0.012025457078379986
MVKTVTLRFV	10	Unmodified	_MVKTVTLRFV_					0	0	0		ENST00000282570.3_1_2:70064728-70064764:+|nuORF	ENST00000282570.3_1_2:70064728-70064764:+|nuORF	ENST00000282570.3_1_2:70064728-70064764:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.3589477539062	2	597.357376	1192.7002	0.51945	0.0003103	0.56717	0.0003388	1.0866	0.0006491	597.3586078268477	90.167	1.2978	90.167	89.63	90.927	0.0003891					299	105	4	0	0	0	0.38773	1	23827	23827		5.7319	0.43497	1	970830			30047	9128	17384	17385	36989	36989					0.11155783973163125
MVLSVFIGK	9	Oxidation (M)	_M(Oxidation (M))VLSVFIGK_		M(1)VLSVFIGK		M(86)VLSVFIGK	0	0	1		ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.29083251953125	2	505.291171	1008.56779	0.35939	0.0001816	-0.64084	-0.00032381	-0.28146	-0.00014222	505.2907165792205	55.542	0.58569	55.542	55.35	55.935	0					48	20	3	0	0	0	0.0059482	1	13271	13271		85.642	53.336	1	940830			30048	3459	17385	17386	36990	36990		439			0.06384759236368609
MVLSVFIGK	9	Oxidation (M)	_M(Oxidation (M))VLSVFIGK_		M(1)VLSVFIGK		M(86)VLSVFIGK	0	0	1		ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.291015625	2	505.291171	1008.56779	0.53668	0.00027118	-0.5752	-0.00029064	-0.038523	-1.9465E-05	505.2908131473432	55.514	0.7233	55.584	55.324	56.048	0.070889					53	26	3	0	0	0	0.0059482	1	13272	13272		85.642	58.758	1	1152100			30049	3459	17385	17386	36991	36991		439			0.06384759236368609
MVLSVFIGK	9	Oxidation (M)	_M(Oxidation (M))VLSVFIGK_		M(1)VLSVFIGK		M(59)VLSVFIGK	0	0	1		ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	ENSG00000130227|ENST00000252512|XPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2907409667969	2	505.291171	1008.56779	0.44188	0.00022328	-0.95315	-0.00048162	-0.51128	-0.00025834	505.2905650248953	55.696	0.80981	55.677	55.349	56.159	-0.019081					66	29	3	0	0	0	0.034444	1	13317	13317		58.679	40.544	1	834040			30050	3459	17385	17386	36992	36992		439			0.06384759236368609
MVQLSEATLN	10	Unmodified	_MVQLSEATLN_					0	0	0			REV__nc|ENSG00000151422|P16591-2|FER	REV__nc|ENSG00000151422|P16591-2|FER	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.310791015625	2	553.281531	1104.54851	0.43884	0.0002428	1.6943	0.00093745	2.1332	0.0011802	553.282586611923	82.627	0.39522	82.606	82.422	82.818	-0.020584					27	15	2	0	0	0	0.2623	1	21581	21581		32.786	11.039	1	159920	+		30051	16539	17386	17387	36993	36993					0.000417581547935697
MVQYFVPESAP	11	Unmodified	_MVQYFVPESAP_					0	0	0			REV__ENSG00000157399|ENST00000381134|ARSL	REV__ENSG00000157399|ENST00000381134|ARSL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3076171875	2	634.305007	1266.59546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.74	1	102.74	102.24	103.24	-0.0033646								0	0	0	0.37382	1	27351	27351		2.9952	0	1		+		30052	16782	17387	17388	36994	36994					-0.027173822940767423
MVSECLFSLIM	11	Unmodified	_MVSECLFSLIM_					0	0	0		MCOLN3|p.N456Mfs*18|1|0.3|ENSG00000055732|chr1:85021230-85021230|T/-|frameshift_variant	MCOLN3|p.N456Mfs*18|1|0.3|ENSG00000055732|chr1:85021230-85021230|T/-|frameshift_variant	MCOLN3|p.N456Mfs*18|1|0.3|ENSG00000055732|chr1:85021230-85021230|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.8933410644531	3	424.872739	1271.59639	-0.018724	-7.9551E-06	2.6344	0.0011193	2.6157	0.0011113	424.8739419748491	19.588	0.17191	19.533	19.423	19.595	-0.055693					7	5	2	0	0	0	0.33236	1	2282	2282		4.4062	0.81909	1	26449			30053	12523	17388	17389	36995	36995					-0.028546272410494566
MVSLTLYGAL	10	Unmodified	_MVSLTLYGAL_					0	0	0			REV__ENST00000287844.6_1_7:150910834-150911059:-|nuORF	REV__ENST00000287844.6_1_7:150910834-150911059:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2921752929688	2	534.293911	1066.57327	0.087779	4.69E-05	-1.7731	-0.00094736	-1.6853	-0.00090046	534.2921494451615	81.366	1.1787	81.435	81.195	82.374	0.068993					79	54	2	0	0	0	0.31267	1	21274	21274		14.838	2.3067	1	174650	+		30054	19739	17389	17390	36996	36996					0.04264438028144468
MVSLTLYGAL	10	Unmodified	_MVSLTLYGAL_					0	0	0			REV__ENST00000287844.6_1_7:150910834-150911059:-|nuORF	REV__ENST00000287844.6_1_7:150910834-150911059:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	534.293911	1066.57327	0.47314	0.0002528	-1.5865	-0.00084764	-1.1133	-0.00059484	534.2923129187125	81.59	1.2376	81.566	80.791	82.028	-0.02404	0.065498	0.0001122	NaN	14.838	74	53	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205290	+		30055	19739	17389	17390							0.04264438028144468
MVSRSQPRSS	10	Unmodified	_MVSRSQPRSS_					0	0	0			REV__nc|ENSG00000070610|Q9HCG7-3|GBA2	REV__nc|ENSG00000070610|Q9HCG7-3|GBA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3305053710938	2	567.787847	1133.56114	0.2376	0.00013491	-2.2052	-0.0012521	-1.9676	-0.0011172	568.2886021115885	81	1.7692	81	80.569	82.338	0					106	75	2	0	0	0	0.31515	1	21061	21061		12.241	6.0349	1	1256000	+		30056	13729	17390	17391	36997	36997					-0.0002978566230922297
MVTDMMYED	9	Unmodified	_MVTDMMYED_					0	0	0			REV__STAG2|p.I201M|1|0.22|ENSG00000101972|chrX:124045304-124045304|T/G|missense_variant	REV__STAG2|p.I201M|1|0.22|ENSG00000101972|chrX:124045304-124045304|T/G|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.1708984375	2	567.711236	1133.40792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.455	1	18.338	17.838	18.838	-0.11739								0	0	0	0.26704	1	1939	1939		0.6015	0	1		+		30057	23311	17391	17392	36998	36998					-0.15344904885296273
MVTMDTKCK	9	Unmodified	_MVTMDTKCK_					0	0	0			REV__nc|ENSG00000152092|O14525-3|ASTN1	REV__nc|ENSG00000152092|O14525-3|ASTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3001708984375	2	528.747956	1055.48136	0.36178	0.00019129	2.3167	0.0012249	2.6784	0.0014162	529.2506004158955	76.349	0.68187	76.349	75.877	76.559	0					29	24	2	0	0	0	0.24848	1	19592	19592		13.906	1.3745	1	125030	+		30058	16565	17392	17393	36999	36999					-0.04416311652198601
MVTMDTKCK	9	Unmodified	_MVTMDTKCK_					0	0	0			REV__nc|ENSG00000152092|O14525-3|ASTN1	REV__nc|ENSG00000152092|O14525-3|ASTN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	528.747956	1055.48136	0.22982	0.00012152	1.7794	0.00094084	2.0092	0.0010624	529.2503967139594	76.358	0.40303	76.411	76.216	76.619	0.053413	0.031207	-0.00017777	NaN	13.906	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153310	+		30059	16565	17392	17393							-0.04416311652198601
MVTVICMLL	9	Unmodified	_MVTVICMLL_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.3034057617188	2	511.775985	1021.53742	0.064035	3.2772E-05	0.73763	0.0003775	0.80167	0.00041027	512.2790449998695	80.715	0.70276	80.78	80.603	81.305	0.065094					61	32	3	0	0	0	0.2451	1	21028	21028		15.847	0	1	340460	+		30060	14115	17393	17394	37000	37000					0.02750941255305861
MVVTCMRWA	9	Unmodified	_MVVTCMRWA_					0	0	0		ENST00000398425.7_1_20:23356349-23356457:-|nuORF	ENST00000398425.7_1_20:23356349-23356457:-|nuORF	ENST00000398425.7_1_20:23356349-23356457:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7587280273438	2	548.758658	1095.50276	0.20405	0.00011197	0.10404	5.7091E-05	0.30808	0.00016906	548.7584172606124	23.265	0.95451	23.265	22.845	23.8	0					90	32	4	0	0	0	0.34681	1	3376	3376		1.8442	0.36234	1	501260			30061	10163	17394	17395	37001	37001					-0.0411688183280603
MVWAQAARR	9	Unmodified	_MVWAQAARR_					0	0	0		ENSG00000125398|ENST00000245479|SOX9;ENST00000566034.1_1_16:1032135-1032345:+|nuORF;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000005513|ENST00000293894|SOX8;nc|ENSG00000100146|P56693|SOX10;ENSG00000100146|ENST00000396884|SOX10	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7921752929688	2	544.792735	1087.57092	0.5533	0.00030144	0.085632	4.6652E-05	0.63894	0.00034809	544.7919683591989	115.71	0.5406	115.73	115.58	116.13	0.018738					99	66	2	0	0	0	0.35512	1	30127	30127		0.6015	0	1	27233			30062	3203	17395	17396	37002	37002					0.030634471337180003
MVWVPRKRE	9	Unmodified	_MVWVPRKRE_					0	0	0			REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.8118286132812	2	600.837143	1199.65973	0.35401	0.0002127	1.8942	0.0011381	2.2482	0.0013508	600.8382637743711	19.239	0.36846	19.123	18.891	19.26	-0.11592					20	12	2	0	0	0	0.26251	1	2126	2126		0.6015	0.076735	1	47309	+		30063	18473	17396	17397	37003	37003					0.06788862373400661
MVYGPMDDQGF	11	Unmodified	_MVYGPMDDQGF_					0	0	0		ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C	ENSG00000275793|ENST00000619918|RIMBP3	ENSG00000275793|ENST00000619918|RIMBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.8377990722656	3	420.507225	1258.49985	0.2111	8.8768E-05	-2.5074	-0.0010544	-2.2963	-0.00096563	420.8407483501196	64.31	0.51798	64.403	64.2	64.718	0.09288					51	18	4	0	0	0	0.3325	1	16018	16018		2.2527	0.51045	1	382270			30064	7352	17397	17398	37004	37004					-0.11906478476657867
MVYPFTGDHK	10	Oxidation (M)	_M(Oxidation (M))VYPFTGDHK_		M(1)VYPFTGDHK		M(48)VYPFTGDHK	0	0	1		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.19036865234375	3	404.190225	1209.54884	-0.3164	-0.00012789	0.82832	0.0003348	0.51192	0.00020691	404.19055505868505	30.611	1.124	30.638	30.281	31.405	0.027157					101	40	4	0	0	0	0.099967	1	5627	5627		48.073	39.628	1	519230			30065	3570	17398	17399	37005	37005		454			-0.04754822125346436
MWFRTYMWG	9	Unmodified	_MWFRTYMWG_					0	0	0		ENST00000532395.5_1_17:72947667-72950470:-|nuORF;nc|ENSG00000167861|Q8IV36-3|HID1;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1	ENST00000532395.5_1_17:72947667-72950470:-|nuORF	ENST00000532395.5_1_17:72947667-72950470:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	639.2844848632812	2	639.283354	1276.55216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.131	1	89.221	88.721	89.721	0.090569								0	0	0	0.2672	1	23566	23566		0.52476	0	1				30066	6218	17399	17400	37006	37006					-0.075058505523657
MWIYSHHIY	9	Unmodified	_MWIYSHHIY_					0	0	0		nc|ENSG00000013392|Q9UIY3-2|RWDD2A;ENSG00000013392|ENST00000369724|RWDD2A	nc|ENSG00000013392|Q9UIY3-2|RWDD2A	nc|ENSG00000013392|Q9UIY3-2|RWDD2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.2938842773438	2	625.294776	1248.575	0.13113	8.1997E-05	-3.8826	-0.0024277	-3.7514	-0.0023457	625.293768281235	106.55	0.069908	106.56	106.53	106.6	0.0050583					22	10	3	0	0	0	0.30623	1	28198	28198		7.9102	0.62092	1	753500			30067	464	17400	17401	37007	37007					-0.03934508163229111
MWIYSHHIY	9	Unmodified	_MWIYSHHIY_					0	0	0		nc|ENSG00000013392|Q9UIY3-2|RWDD2A;ENSG00000013392|ENST00000369724|RWDD2A	nc|ENSG00000013392|Q9UIY3-2|RWDD2A	nc|ENSG00000013392|Q9UIY3-2|RWDD2A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	625.294776	1248.575	-0.04799	-3.0008E-05	-4.897	-0.003062	-4.9449	-0.003092	625.2928561344906	106.56	0.075287	106.56	106.54	106.61	0	-0.0020916	-0.00052588	NaN	7.9102	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	840010			30068	464	17400	17401							-0.03934508163229111
MWNWGLSF	8	Unmodified	_MWNWGLSF_					0	0	0			REV__ENST00000482889.1_1_1:109472820-109486481:-|nuORF	REV__ENST00000482889.1_1_1:109472820-109486481:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7562866210938	2	520.736563	1039.45857	0.39299	0.00020464	-1.6905	-0.00088032	-1.2975	-0.00067567	520.7359184531965	81.627	0.94871	81.603	81.161	82.11	-0.024048					116	40	5	0	0	0	0.33245	1	21182	21182		19.439	1.304	1	742050	+		30069	15137	17401	17402	37008	37008					-0.059578266631206134
MWPLWGSL	8	Unmodified	_MWPLWGSL_					0	0	0			REV__ENSG00000185899|ENST00000332690|TAS2R60	REV__ENSG00000185899|ENST00000332690|TAS2R60	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2501220703125	2	495.249306	988.484059	0.89772	0.00044459	0.51674	0.00025591	1.4145	0.00070051	495.2495384945549	56.258	0.81785	56.336	56.117	56.935	0.078674					69	30	3	0	0	0	0.39956	1	13565	13565		19.439	19.439	1	2595400	+		30070	18416	17402	17403	37009	37009					-0.010643521407018852
MWPYIQIS	8	Unmodified	_MWPYIQIS_					0	0	0			REV__nc|ENSG00000197757|P09630-2|HOXC6	REV__nc|ENSG00000197757|P09630-2|HOXC6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2796630859375	2	519.259871	1036.50519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.491	1	93.491	92.991	93.991	-0.00051117								0	0	0	0.31323	1	24899	24899		26.884	0.61551	1		+		30071	18764	17403	17404	37010	37010					-0.011603868318388777
MWQQYRSDVLV	11	Unmodified	_MWQQYRSDVLV_					0	0	0			REV__ENST00000487229.6_1_17:12905763-12906899:-|nuORF	REV__ENST00000487229.6_1_17:12905763-12906899:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.8109436035156	3	475.571216	1423.69182	0.31642	0.00015048	-0.20802	-9.8926E-05	0.1084	5.1554E-05	475.57091481559746	37.746	0.37485	37.837	37.667	38.042	0.090881					23	13	2	0	0	0	0.33277	1	7810	7810		3.0723	0.22898	1	175140	+		30072	13372	17404	17405	37011	37011					-0.0030781473415117944
MWQQYRSDVLV	11	Unmodified	_MWQQYRSDVLV_					0	0	0			REV__ENST00000487229.6_1_17:12905763-12906899:-|nuORF	REV__ENST00000487229.6_1_17:12905763-12906899:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	475.571216	1423.69182	0.32113	0.00015272	-0.35373	-0.00016822	-0.0326	-1.5504E-05	475.57110446999553	37.851	0.3342	37.851	37.646	37.98	0	0.016737	-0.00018396	NaN	3.0723	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168390	+		30073	13372	17404	17405							-0.0030781473415117944
MWWERWMKHW	10	Unmodified	_MWWERWMKHW_					0	0	0		ENST00000301180.9_1_12:51133363-51135252:+|nuORF	ENST00000301180.9_1_12:51133363-51135252:+|nuORF	ENST00000301180.9_1_12:51133363-51135252:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.29833984375	3	525.909398	1574.70636	0.5783	0.00030414	0.10041	5.2805E-05	0.67871	0.00035694	525.9095467841228	23.916	0.48343	23.877	23.651	24.135	-0.038927					35	16	3	0	0	0	0.32174	1	3545	3545		0.15932	0.064481	1	101350			30074	9225	17405	17406	37012	37012					-0.058000210669888475
MYDIRRGNG	9	Unmodified	_MYDIRRGNG_					0	0	0			REV__ENST00000563396.1_1_16:68395424-68397457:-|nuORF	REV__ENST00000563396.1_1_16:68395424-68397457:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.263671875	2	541.264007	1080.51346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.558	1	92.558	92.058	93.058	0								0	0	0	0.23367	1	24621	24621		11.64	3.047	1		+		30075	14352	17406	17407	37013	37013					-0.0235743986252146
MYGFVNHAL	9	Oxidation (M)	_M(Oxidation (M))YGFVNHAL_		M(1)YGFVNHAL		M(160)YGFVNHAL	0	0	1		ENSG00000061918|ENST00000264424|GUCY1B1;nc|ENSG00000061918|Q02153-2|GUCY1B1;ENST00000505764.5_1_4:156680217-156693886:+|nuORF	ENSG00000061918|ENST00000264424|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2528076171875	2	534.252577	1066.4906	0.78082	0.00041715	-0.32211	-0.00017209	0.4587	0.00024506	534.2524410510573	47.351	1.0603	47.351	46.789	47.849	0					119	37	5	0	0	0	4.6753E-07	3	10670	10670;10728;10779		161.89	132.81	1	6379200			30076	761	17407	17408	37014;37015;37016	37014		99			-0.03998458980004216
MYGFVNHAL	9	Oxidation (M)	_M(Oxidation (M))YGFVNHAL_		M(1)YGFVNHAL		M(51)YGFVNHAL	0	0	1		ENSG00000061918|ENST00000264424|GUCY1B1;nc|ENSG00000061918|Q02153-2|GUCY1B1;ENST00000505764.5_1_4:156680217-156693886:+|nuORF	ENSG00000061918|ENST00000264424|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2919311523438	2	534.252577	1066.4906	0.70078	0.0003744	-0.1476	-7.8857E-05	0.55318	0.00029554	534.2525817177004	48.085	0.65263	48.085	48.012	48.665	0					33	22	2	0	0	0	0.072564	1	10993	10993		50.855	35.008	1	218530			30077	761	17407	17408	37017	37017		99			-0.03998458980004216
MYGFVNHAL	9	Oxidation (M)	_M(Oxidation (M))YGFVNHAL_		M(1)YGFVNHAL		M(160)YGFVNHAL	0	0	1		ENSG00000061918|ENST00000264424|GUCY1B1;nc|ENSG00000061918|Q02153-2|GUCY1B1;ENST00000505764.5_1_4:156680217-156693886:+|nuORF	ENSG00000061918|ENST00000264424|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2530517578125	2	534.252577	1066.4906	0.34488	0.00018425	0.17864	9.5438E-05	0.52352	0.00027969	534.252708916722	47.278	1.0706	47.331	46.737	47.808	0.052574					127	39	5	0	0	0	4.6753E-07	3	10612	10612;10699;10740		161.89	136.5	1	6764100			30078	761	17407	17408	37018;37019;37020	37018		99			-0.03998458980004216
MYGFVNHAL	9	Oxidation (M)	_M(Oxidation (M))YGFVNHAL_		M(1)YGFVNHAL		M(180)YGFVNHAL	0	0	1		ENSG00000061918|ENST00000264424|GUCY1B1;nc|ENSG00000061918|Q02153-2|GUCY1B1;ENST00000505764.5_1_4:156680217-156693886:+|nuORF	ENSG00000061918|ENST00000264424|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2528686523438	2	534.252577	1066.4906	1.0159	0.00054276	-0.64013	-0.00034199	0.3758	0.00020077	534.2523165637949	47.311	1.9676	47.366	46.631	48.599	0.054371					155	72	5	0	0	0	2.3311E-08	3	10703	10627;10703;10750		179.23	150.15	1	6707300			30079	761	17407	17408	37021;37022;37023	37022		99			-0.03998458980004216
MYGKVYRI	8	Oxidation (M)	_M(Oxidation (M))YGKVYRI_		M(1)YGKVYRI		M(40)YGKVYRI	0	0	1		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H;ENST00000476003.1_1_3:184084469-184086079:+|nuORF	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2793579101562	2	523.278595	1044.54264	0.62772	0.00032847	1.4877	0.0007785	2.1155	0.001107	523.279383024721	29.382	1.1631	29.382	28.67	29.833	0					77	41	2	0	0	0	0.2157	1	5268	5268		40.449	13.225	1	289410			30080	5750	17408	17409	37024	37024		680			0.022147044337543775
MYGLFQTSF	9	Oxidation (M)	_M(Oxidation (M))YGLFQTSF_		M(1)YGLFQTSF		M(110)YGLFQTSF	0	0	1		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.25244140625	2	555.252243	1108.48993	0.049177	2.7306E-05	1.5631	0.00086793	1.6123	0.00089523	555.25277823118	75.792	1.2443	75.792	75.449	76.693	0					141	44	6	0	0	0	0.00207	4	19455	19455;19503;19550;19603		109.63	42.301	1	3140200			30081	1078	17409	17410	37025;37026;37027;37028	37025		132			-0.059972984197202095
MYGLFQTSF	9	Oxidation (M)	_M(Oxidation (M))YGLFQTSF_		M(1)YGLFQTSF		M(100)YGLFQTSF	0	0	1		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2525634765625	2	555.252243	1108.48993	0.27343	0.00015182	0.89741	0.00049829	1.1708	0.00065011	555.2524739960203	75.724	0.76103	75.777	75.454	76.215	0.052361					105	27	6	0	0	0	0.0032391	4	19476	19428;19476;19524;19552		100.37	51.054	1	3437500			30082	1078	17409	17410	37029;37030;37031;37032	37030		132			-0.059972984197202095
MYGLFQTSF	9	Oxidation (M)	_M(Oxidation (M))YGLFQTSF_		M(1)YGLFQTSF		M(100)YGLFQTSF	0	0	1		ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	ENSG00000077147|ENST00000371142|TM9SF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2523193359375	2	555.252243	1108.48993	0.26575	0.00014756	0.91442	0.00050773	1.1802	0.00065529	555.2526631776669	75.806	1.0931	75.774	75.416	76.509	-0.031487					75	39	2	0	0	0	0.0032391	3	19445	19445;19494;19544		100.37	42.301	1	3173300			30083	1078	17409	17410	37033;37034;37035	37033		132			-0.059972984197202095
MYGYRRLR	8	Unmodified	_MYGYRRLR_					0	0	0		ENSG00000255378|ENST00000528972|PRR23D2;ENSG00000255251|ENST00000533250|PRR23D1	ENSG00000255378|ENST00000528972|PRR23D2	ENSG00000255378|ENST00000528972|PRR23D2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7998657226562	2	557.80056	1113.58657	-0.026432	-1.4744E-05	-0.99432	-0.00055463	-1.0208	-0.00056938	557.7997890564843	13.523	0.26455	13.523	13.396	13.66	0					16	8	3	0	0	0	0.46491	1	476	476		0.69038	0	1	66182			30084	8616	17410	17411	37036	37036					0.034317336507456275
MYHAPYPRP	9	Unmodified	_MYHAPYPRP_					0	0	0			REV__TRAPPC8|p.T893Hfs*11|1|0.28|ENSG00000153339|chr18:31864695-31864695|T/-|frameshift_variant	REV__TRAPPC8|p.T893Hfs*11|1|0.28|ENSG00000153339|chr18:31864695-31864695|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.8078002929688	2	566.273844	1130.53313	0.35526	0.00020118	-4.3856	-0.0024835	-4.0304	-0.0022823	566.2709911037622	22.081	0.37245	21.981	21.832	22.205	-0.10034					18	13	2	0	0	0	0.26145	1	3012	3012		2.0598	0	1	70854	+		30085	16625	17411	17412	37037	37037					-0.0269106385176201
MYIIPVVLF	9	Oxidation (M)	_M(Oxidation (M))YIIPVVLF_		M(1)YIIPVVLF		M(56)YIIPVVLF	0	0	1		ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8170166015625	2	555.817021	1109.61949	-0.087904	-4.8858E-05	0.39544	0.00021979	0.30753	0.00017093	555.8169514877975	99.373	0.88168	99.373	99.023	99.905	0					250	113	3	0	0	0	0.041522	4	26561	26561;26585;26588;26602		56.048	35.177	1	520510			30086	5524	17412	17413	37038;37039;37040;37041	37038		664			0.06906502930246461
MYIIPVVLF	9	Oxidation (M)	_M(Oxidation (M))YIIPVVLF_		M(1)YIIPVVLF		M(56)YIIPVVLF	0	0	1		ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.81689453125	2	555.817021	1109.61949	0.103	5.725E-05	0.2376	0.00013206	0.3406	0.00018931	555.8168508420637	99.264	1.3185	99.315	98.48	99.798	0.050888					271	110	3	0	0	0	0.041522	8	26518	26518;26535;26540;26562;26568;26577;26600;26604		56.048	41.467	1	731830			30087	5524	17412	17413	37042;37043;37044;37045;37046;37047;37048;37049	37042		664			0.06906502930246461
MYIIPVVLF	9	Oxidation (M)	_M(Oxidation (M))YIIPVVLF_		M(1)YIIPVVLF		M(56)YIIPVVLF	0	0	1		ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	ENSG00000161671|ENST00000334976|EMC10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.817138671875	2	555.817021	1109.61949	0.19995	0.00011114	0.09793	5.4431E-05	0.29788	0.00016557	555.8168247684864	99.414	1.4284	99.408	98.573	100	-0.0069046					325	121	4	0	0	0	0.041522	6	26582	26582;26588;26597;26612;26638;26643		56.048	35.177	1	621430			30088	5524	17412	17413	37050;37051;37052;37053;37054;37055	37050		664			0.06906502930246461
MYIQMVTALVL	11	Unmodified	_MYIQMVTALVL_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.3515014648438	2	641.350902	1280.68725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.08	1	106.08	105.58	106.58	0								0	0	0	0.36137	1	28055	28055		5.7319	0.43497	1				30089	5810	17413	17414	37056	37056					0.05813584798715965
MYIRYIHKL	9	Oxidation (M)	_M(Oxidation (M))YIRYIHKL_		M(1)YIRYIHKL		M(86)YIRYIHKL	0	0	1		ENSG00000088538|ENST00000266037|DOCK3;DOCK3|p.N1302Rfs*23|1|0.22|ENSG00000088538|chr3:51341374-51341378|AACAA/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	ENSG00000088538|ENST00000266037|DOCK3;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.23406982421875	3	418.233876	1251.6798	0.16386	6.8531E-05	0.0096112	4.0197E-06	0.17347	7.2551E-05	418.2338479228766	33.923	2.1018	33.923	33.31	35.412	0					215	75	5	0	0	0	0.0054984	5	6605	6509;6556;6605;6654;6708		86.332	48.156	1	3925300			30090	3371;1325	17414	17415	37057;37058;37059;37060;37061	37059		165			0.06402613313321126
MYIRYIHKL	9	Oxidation (M)	_M(Oxidation (M))YIRYIHKL_		M(1)YIRYIHKL		M(77)YIRYIHKL	0	0	1		ENSG00000088538|ENST00000266037|DOCK3;DOCK3|p.N1302Rfs*23|1|0.22|ENSG00000088538|chr3:51341374-51341378|AACAA/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	ENSG00000088538|ENST00000266037|DOCK3;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.2335510253906	3	418.233876	1251.6798	0.49608	0.00020748	-0.35974	-0.00015046	0.13634	5.7023E-05	418.2337138762849	33.731	1.5951	33.797	33.239	34.834	0.06636					219	57	5	0	0	0	0.011693	5	6503	6457;6503;6554;6606;6656		76.825	38.649	1	4368000			30091	3371;1325	17414	17415	37062;37063;37064;37065;37066	37063		165			0.06402613313321126
MYIRYIHKL	9	Oxidation (M)	_M(Oxidation (M))YIRYIHKL_		M(1)YIRYIHKL		M(42)YIRYIHKL	0	0	1		ENSG00000088538|ENST00000266037|DOCK3;DOCK3|p.N1302Rfs*23|1|0.22|ENSG00000088538|chr3:51341374-51341378|AACAA/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	ENSG00000088538|ENST00000266037|DOCK3;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.847900390625	2	626.847176	1251.6798	0.4747	0.00029757	0.19545	0.00012252	0.67015	0.00042008	626.8472957885813	33.666	0.79683	33.732	33.323	34.12	0.06636					66	28	3	0	0	0	0.079752	1	6567	6567		41.84	25.992	1	320450			30092	3371;1325	17414	17415	37067	37067		165			0.06402613313321126
MYIRYIHKL	9	Oxidation (M)	_M(Oxidation (M))YIRYIHKL_		M(1)YIRYIHKL		M(77)YIRYIHKL	0	0	1		ENSG00000088538|ENST00000266037|DOCK3;DOCK3|p.N1302Rfs*23|1|0.22|ENSG00000088538|chr3:51341374-51341378|AACAA/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	ENSG00000088538|ENST00000266037|DOCK3;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2335510253906	3	418.233876	1251.6798	-0.042822	-1.791E-05	0.13449	5.6249E-05	0.091669	3.8339E-05	418.23392966930714	33.76	2.1655	33.826	33.132	35.297	0.0667					222	77	5	0	0	0	0.011693	5	6492	6448;6492;6543;6592;6635		76.825	45.556	1	3972800			30093	3371;1325	17414	17415	37068;37069;37070;37071;37072	37069		165			0.06402613313321126
MYIRYLYKL	9	Oxidation (M)	_M(Oxidation (M))YIRYLYKL_		M(1)YIRYLYKL		M(59)YIRYLYKL	0	0	1		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	ENST00000523351.5_1_5:169188379-169509859:+|nuORF;nc|ENSG00000150760|Q14185|DOCK1	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	639.8495483398438	2	639.849384	1277.68422	0.4922	0.00031493	-0.3539	-0.00022644	0.13829	8.8488E-05	639.8490931514896	51.382	0.70098	51.382	51.108	51.809	0					55	25	3	0	0	0	0.034444	2	11963	11963;12028		58.679	49.296	1	510130			30094	3792;4924	17415	17416	37073;37074	37073		473			0.05648077736236701
MYIRYLYKL	9	Oxidation (M)	_M(Oxidation (M))YIRYLYKL_		M(1)YIRYLYKL		M(59)YIRYLYKL	0	0	1		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	ENST00000523351.5_1_5:169188379-169509859:+|nuORF;nc|ENSG00000150760|Q14185|DOCK1	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	639.8492431640625	2	639.849384	1277.68422	0.52159	0.00033374	-0.14376	-9.1986E-05	0.37783	0.00024176	639.8491845405654	51.335	0.60632	51.382	51.118	51.725	0.046574					54	22	3	0	0	0	0.034444	2	11971	11971;12026		58.679	46.438	1	601330			30095	3792;4924	17415	17416	37075;37076	37075		473			0.05648077736236701
MYIRYLYKL	9	Oxidation (M)	_M(Oxidation (M))YIRYLYKL_		M(1)YIRYLYKL		M(53)YIRYLYKL	0	0	1		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	ENST00000523351.5_1_5:169188379-169509859:+|nuORF;nc|ENSG00000150760|Q14185|DOCK1	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.9017639160156	3	426.902015	1277.68422	-0.072288	-3.086E-05	0.083189	3.5514E-05	0.010901	4.6538E-06	426.9020268963803	51.429	1.1631	51.476	51.142	52.305	0.046577					89	42	4	0	0	0	0.048637	1	12002	12002		53.404	45.118	1	1154500			30096	3792;4924	17415	17416	37077	37077		473			0.05648077736236701
MYIRYLYKL	9	Oxidation (M)	_M(Oxidation (M))YIRYLYKL_		M(1)YIRYLYKL		M(65)YIRYLYKL	0	0	1		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	ENST00000523351.5_1_5:169188379-169509859:+|nuORF;nc|ENSG00000150760|Q14185|DOCK1	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	639.8493041992188	2	639.849384	1277.68422	0.5338	0.00034155	-0.20968	-0.00013417	0.32411	0.00020738	639.8490573423085	51.614	0.69242	51.624	51.246	51.939	0.0095634					46	25	2	0	0	0	0.019245	2	12031	12031;12091		65.235	54.436	1	501110			30097	3792;4924	17415	17416	37078;37079	37078		473			0.05648077736236701
MYISNRHEF	9	Oxidation (M)	_M(Oxidation (M))YISNRHEF_		M(1)YISNRHEF		M(48)YISNRHEF	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145794517-145794673:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.853759765625	3	404.853724	1211.53934	-0.23745	-9.6131E-05	0.13743	5.5638E-05	-0.10002	-4.0493E-05	404.85385722852345	27.353	0.58153	27.353	26.979	27.561	0					69	19	5	0	0	0	0.063898	2	4628	4584;4628		47.732	32.255	1	2425800			30098	5048	17416	17417	37080;37081	37081		619			-0.0579659041090963
MYISNRHEF	9	Oxidation (M)	_M(Oxidation (M))YISNRHEF_		M(1)YISNRHEF		M(50)YISNRHEF	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145794517-145794673:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.7770385742188	2	606.776948	1211.53934	0.30021	0.00018216	0.1141	6.9234E-05	0.41431	0.0002514	606.7769972231337	27.358	0.77573	27.358	26.813	27.589	0					61	26	4	0	0	0	0.059067	1	4631	4631		49.527	35.912	1	599970			30099	5048	17416	17417	37082	37082		619			-0.0579659041090963
MYISNRHEF	9	Oxidation (M)	_M(Oxidation (M))YISNRHEF_		M(1)YISNRHEF		M(78)YISNRHEF	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145794517-145794673:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.7772216796875	2	606.776948	1211.53934	0.14313	8.6847E-05	0.031266	1.8971E-05	0.17439	0.00010582	606.7769717258635	27.774	0.61965	27.774	27.561	28.181	0					64	21	4	0	0	0	0.010888	2	4757	4757;4803		78.06	59.687	1	672950			30100	5048	17416	17417	37083;37084	37083		619			-0.0579659041090963
MYISNRHEF	9	Oxidation (M)	_M(Oxidation (M))YISNRHEF_		M(1)YISNRHEF		M(63)YISNRHEF	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145794517-145794673:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.777099609375	2	606.776948	1211.53934	0.27088	0.00016436	0.15541	9.43E-05	0.42629	0.00025866	606.7770660971124	27.346	0.60167	27.324	26.926	27.528	-0.021412					56	20	4	0	0	0	0.022205	1	4608	4608		63.227	36.959	1	579760			30101	5048	17416	17417	37085	37085		619			-0.0579659041090963
MYISNRHEF	9	Oxidation (M)	_M(Oxidation (M))YISNRHEF_		M(1)YISNRHEF		M(59)YISNRHEF	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145794517-145794673:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.853759765625	3	404.853724	1211.53934	-0.33285	-0.00013476	0.27822	0.00011264	-0.054634	-2.2119E-05	404.85390245727655	27.358	0.60167	27.337	26.926	27.528	-0.021412					71	20	5	0	0	0	0.033439	1	4635	4635		59.052	36.394	1	2789200			30102	5048	17416	17417	37086	37086		619			-0.0579659041090963
MYISNRHEF	9	Oxidation (M)	_M(Oxidation (M))YISNRHEF_		M(1)YISNRHEF		M(87)YISNRHEF	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145794517-145794673:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.7769775390625	2	606.776948	1211.53934	0.13684	8.303E-05	0.15229	9.2408E-05	0.28913	0.00017544	606.7770335726025	27.753	0.70208	27.731	27.528	28.23	-0.021412					65	24	4	0	0	0	0.0048951	1	4753	4753		87.258	63.238	1	684220			30103	5048	17416	17417	37087	37087		619			-0.0579659041090963
MYISNRHEF	9	Oxidation (M)	_M(Oxidation (M))YISNRHEF_		M(1)YISNRHEF		M(72)YISNRHEF	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145794517-145794673:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.7772827148438	2	606.776948	1211.53934	0.1341	8.1369E-05	0.41708	0.00025308	0.55118	0.00033444	606.777141855105	27.369	0.54185	27.358	27.042	27.584	-0.01156					50	18	4	0	0	0	0.015027	2	4665	4614;4665		71.708	51.293	1	691050			30104	5048	17416	17417	37088;37089	37089		619			-0.0579659041090963
MYISNRHEF	9	Oxidation (M)	_M(Oxidation (M))YISNRHEF_		M(1)YISNRHEF		M(51)YISNRHEF	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145794517-145794673:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.85382080078125	3	404.853724	1211.53934	-0.2823	-0.00011429	0.22847	9.2498E-05	-0.053827	-2.1792E-05	404.853888823751	27.401	0.54093	27.389	27.014	27.555	-0.01156					70	18	5	0	0	0	0.053792	1	4646	4646		51.488	31.862	1	2794400			30105	5048	17416	17417	37090	37090		619			-0.0579659041090963
MYISNRHEF	9	Oxidation (M)	_M(Oxidation (M))YISNRHEF_		M(1)YISNRHEF		M(81)YISNRHEF	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145794517-145794673:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.777099609375	2	606.776948	1211.53934	-0.081024	-4.9164E-05	0.43016	0.00026101	0.34913	0.00021184	606.7772128652396	27.766	0.73064	27.755	27.499	28.23	-0.01156					69	25	4	0	0	0	0.0091837	2	4739	4739;4788		80.676	50.835	1	766460			30106	5048	17416	17417	37091;37092	37091		619			-0.0579659041090963
MYITYRSF	8	Unmodified	_MYITYRSF_					0	0	0		ENST00000398391.6_1_17:53077004-53077139:+|nuORF	ENST00000398391.6_1_17:53077004-53077139:+|nuORF	ENST00000398391.6_1_17:53077004-53077139:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7821655273438	2	540.762778	1079.511	0.2759	0.0001492	-3.6814	-0.0019908	-3.4055	-0.0018416	540.760633615059	29.913	0.406	29.926	29.714	30.12	0.013474					23	13	2	0	0	0	0.30795	1	5422	5422		30.637	0	1	118540			30107	10160	17417	17418	37093	37093					-0.025572883201675722
MYIYIYVHF	9	Unmodified	_MYIYIYVHF_					0	0	0			REV__ENST00000342756.9_1_4:57368535-57368814:+|nuORF	REV__ENST00000342756.9_1_4:57368535-57368814:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.5667419433594	3	416.875577	1247.6049	0.10684	4.4541E-05	1.2909	0.00053816	1.3978	0.0005827	416.87630750632377	23.075	0.79138	23.03	22.679	23.47	-0.044867					45	28	2	0	0	0	0.26099	1	3272	3272		1.1933	0	1	127640	+		30108	20127	17418	17419	37094	37094					-0.008995692179041725
MYKKMHRIN	9	Unmodified	_MYKKMHRIN_					0	0	0		nc|ENSG00000154556|O94875-7|SORBS2;nc|ENSG00000154556|O94875|SORBS2;nc|ENSG00000154556|O94875-11|SORBS2;ENSG00000154556|ENST00000695409|SORBS2;SORBS2|p.A926Efs*23|1|0.04|ENSG00000154556|chr4:185614937-185614938|-/GTTATCTTTTT|frameshift_variant;SORBS2|p.Q927Ifs*25|1|0.09|ENSG00000154556|chr4:185614936-185614937|-/ATATTTTCAAAACTAAAATA|frameshift_variant	nc|ENSG00000154556|O94875-7|SORBS2	nc|ENSG00000154556|O94875-7|SORBS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.23651123046875	3	407.551211	1219.6318	0.26191	0.00010674	3.089	0.0012589	3.3509	0.0013657	407.55256654370396	32.069	0.28063	32.111	31.994	32.275	0.042366					11	9	2	0	0	0	0.25612	1	6096	6096		8.1555	2.8586	1	41905			30109	5137	17419	17420	37095	37095					0.030772161216646055
MYLIPYAH	8	Unmodified	_MYLIPYAH_					0	0	0			REV__nc|ENSG00000168116|Q9HCI6-2|KIAA1586	REV__nc|ENSG00000168116|Q9HCI6-2|KIAA1586	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.25201416015625	2	504.254588	1006.49462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.45	1	20.397	19.897	20.897	-0.05291								0	0	0	0.37595	1	2540	2540		2.8892	0.58649	1		+		30110	17441	17420	17421	37096	37096					-0.008363694862850934
MYLKTVDKF	9	Oxidation (M)	_M(Oxidation (M))YLKTVDKF_		M(1)YLKTVDKF		M(100)YLKTVDKF	0	0	1		nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8046264648438	2	580.804642	1159.59473	0.42422	0.00024639	0.44497	0.00025844	0.86919	0.00050483	580.8050066527625	36.732	1.5128	36.732	35.856	37.369	0					133	54	4	0	0	0	0.0056456	1	7528	7528		103.42	59.561	1	1235700			30111	7867	17421	17422	37097	37097		854			0.021318230568567742
MYLKTVDKF	9	Oxidation (M)	_M(Oxidation (M))YLKTVDKF_		M(1)YLKTVDKF		M(100)YLKTVDKF	0	0	1		nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8048095703125	2	580.804642	1159.59473	0.437	0.00025381	0.5672	0.00032943	1.0042	0.00058324	580.8049768898688	36.265	1.3391	36.347	35.874	37.213	0.082359					116	48	3	0	0	0	0.0027395	1	7445	7445		103.42	67.292	1	1439600			30112	7867	17421	17422	37098	37098		854			0.021318230568567742
MYLKTVDKF	9	Oxidation (M)	_M(Oxidation (M))YLKTVDKF_		M(1)YLKTVDKF		M(100)YLKTVDKF	0	0	1		nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.804931640625	2	580.804642	1159.59473	0.66626	0.00038697	0.73544	0.00042715	1.4017	0.00081412	580.8048601434367	36.591	1.5065	36.684	35.769	37.275	0.093018					137	54	3	0	0	0	0.0028542	1	7438	7438		103.42	67.292	1	1249100			30113	7867	17421	17422	37099	37099		854			0.021318230568567742
MYLPCYMYNK	10	Unmodified	_MYLPCYMYNK_					0	0	0		ENST00000361654.8_3_12:122756121-122756220:-|nuORF	ENST00000361654.8_3_12:122756121-122756220:-|nuORF	ENST00000361654.8_3_12:122756121-122756220:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.5690612792969	3	442.529084	1324.56542	-0.070119	-3.103E-05	3.0741	0.0013604	3.004	0.0013294	442.53011037732006	16.701	0.30581	16.586	16.362	16.667	-0.11434					17	10	2	0	0	0	0.32137	1	1380	1380		1.7423	0.14999	1	21827			30114	9695	17422	17423	37100	37100					-0.08387780555290192
MYLSALQSL	9	Unmodified	_MYLSALQSL_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2686157226562	2	513.270435	1024.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.905	1	95.905	95.405	96.405	0								0	0	0	0.25499	1	25610	25610		4.756	0	1				30115	3785	17423	17424	37101	37101					0.015035784770134342
MYLVPAAMF	9	2 Oxidation (M)	_M(Oxidation (M))YLVPAAM(Oxidation (M))F_		M(1)YLVPAAM(1)F		M(67)YLVPAAM(67)F	0	0	2		ENSG00000135821|ENST00000331872|GLUL;ENST00000491322.1_1_1:182356257-182357923:-|nuORF;ENST00000489818.5_1_1:182354893-182357872:-|nuORF;ENST00000475808.5_1_1:182355349-182357923:-|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7533569335938	2	537.753564	1073.49257	0.37817	0.00020336	-0.16501	-8.8735E-05	0.21316	0.00011463	537.7533351491919	69.174	1.0788	69.174	68.841	69.92	0					79	35	3	0	0	0	0.017826	1	17493	17493		67.413	41.072	1	488690			30116	3907	17424	17425	37102	37102		487;488			-0.041231662863992824
MYLVPAAMF	9	2 Oxidation (M)	_M(Oxidation (M))YLVPAAM(Oxidation (M))F_		M(1)YLVPAAM(1)F		M(67)YLVPAAM(67)F	0	0	2		ENSG00000135821|ENST00000331872|GLUL;ENST00000491322.1_1_1:182356257-182357923:-|nuORF;ENST00000489818.5_1_1:182354893-182357872:-|nuORF;ENST00000475808.5_1_1:182355349-182357923:-|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.75341796875	2	537.753564	1073.49257	0.40517	0.00021788	-0.19517	-0.00010496	0.21	0.00011293	537.7533675094687	69.3	1.1449	69.366	68.849	69.993	0.06604					71	40	3	0	0	0	0.017826	1	17487	17487		67.413	47.974	1	529670			30117	3907	17424	17425	37103	37103		487;488			-0.041231662863992824
MYLVPAAMF	9	2 Oxidation (M)	_M(Oxidation (M))YLVPAAM(Oxidation (M))F_		M(1)YLVPAAM(1)F		M(67)YLVPAAM(67)F	0	0	2		ENSG00000135821|ENST00000331872|GLUL;ENST00000491322.1_1_1:182356257-182357923:-|nuORF;ENST00000489818.5_1_1:182354893-182357872:-|nuORF;ENST00000475808.5_1_1:182355349-182357923:-|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7531127929688	2	537.753564	1073.49257	0.42439	0.00022822	-0.23417	-0.00012593	0.19022	0.00010229	537.7533441096225	69.358	1.0473	69.336	68.866	69.913	-0.022087					86	37	3	0	0	0	0.017826	1	17483	17483		67.413	41.072	1	607760			30118	3907	17424	17425	37104	37104		487;488			-0.041231662863992824
MYMLHAMLE	9	Unmodified	_MYMLHAMLE_					0	0	0			REV__nc|ENSG00000054392|Q5VTY9-6|HHAT	REV__nc|ENSG00000054392|Q5VTY9-6|HHAT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.780029296875	2	569.758323	1137.50209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.747	1	73.716	73.216	74.216	-0.030655								0	0	0	0.2362	1	18849	18849		10.824	1.4765	1		+		30119	13585	17425	17426	37105	37105					-0.061157212725220234
MYPAIFDQL	9	Oxidation (M)	_M(Oxidation (M))YPAIFDQL_		M(1)YPAIFDQL		M(120)YPAIFDQL	0	0	1		nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-2|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2681884765625	2	557.267893	1112.52123	0.72047	0.00040149	0.47255	0.00026333	1.193	0.00066483	557.2678145126466	77.996	2.0755	77.996	77.336	79.411	0					210	80	4	0	0	0	0.00067763	1	20202	20202		123.45	77.751	1	1488400			30120	764	17426	17427	37106	37106		100			-0.03052725385600752
MYPAIFDQL	9	Oxidation (M)	_M(Oxidation (M))YPAIFDQL_		M(1)YPAIFDQL		M(120)YPAIFDQL	0	0	1		nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-2|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.26806640625	2	557.267893	1112.52123	0.6584	0.00036691	0.51229	0.00028548	1.1707	0.00065239	557.2678685018848	77.982	2.7059	78.041	77.316	80.022	0.058151					245	105	5	0	0	0	0.00094673	2	20176	20176;20228		123.45	89.049	1	1692400			30121	764	17426	17427	37107;37108	37107		100			-0.03052725385600752
MYPAIFDQL	9	Oxidation (M)	_M(Oxidation (M))YPAIFDQL_		M(1)YPAIFDQL		M(140)YPAIFDQL	0	0	1		nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-2|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.26806640625	2	557.267893	1112.52123	0.77165	0.00043002	0.15213	8.4777E-05	0.92378	0.00051479	557.2678494720191	78.049	1.6935	78.018	77.288	78.982	-0.030434					150	64	4	0	0	0	0.00012782	3	20198	20146;20198;20247		136.33	94.494	1	1667500			30122	764	17426	17427	37109;37110;37111	37110		100			-0.03052725385600752
MYPDLSELLM	10	2 Oxidation (M)	_M(Oxidation (M))YPDLSELLM(Oxidation (M))_		M(1)YPDLSELLM(1)		M(75)YPDLSELLM(75)	0	0	2		ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.2831420898438	2	622.282882	1242.55121	0.4253	0.00026465	-0.507	-0.0003155	-0.081701	-5.0841E-05	622.2828053934055	82.521	0.49463	82.521	82.287	82.782	0					42	18	3	0	0	0	0.017063	2	21560	21499;21560		74.929	54.475	1	235410			30123	2512	17427	17428	37112;37113	37113		307;308			-0.06036154502589852
MYPDLSELLM	10	2 Oxidation (M)	_M(Oxidation (M))YPDLSELLM(Oxidation (M))_		M(1)YPDLSELLM(1)		M(89)YPDLSELLM(89)	0	0	2		ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.7849731445312	2	622.282882	1242.55121	0.087193	5.4259E-05	0.20996	0.00013065	0.29715	0.00018491	622.283143161007	82.41	0.55951	82.483	82.263	82.823	0.073097					47	22	3	0	0	0	0.0054636	1	21490	21490		88.954	68.5	1	305630			30124	2512	17427	17428	37114	37114		307;308			-0.06036154502589852
MYPDLSELLM	10	2 Oxidation (M)	_M(Oxidation (M))YPDLSELLM(Oxidation (M))_		M(1)YPDLSELLM(1)		M(56)YPDLSELLM(56)	0	0	2		ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.2840576171875	2	622.282882	1242.55121	0.30524	0.00018994	-0.37383	-0.00023263	-0.068588	-4.2681E-05	622.2829330739006	82.489	0.53992	82.468	82.278	82.818	-0.020584					42	21	3	0	0	0	0.062954	1	21492	21492		56.177	35.723	1	357870			30125	2512	17427	17428	37115	37115		307;308			-0.06036154502589852
MYPDVFAHF	9	Oxidation (M)	_M(Oxidation (M))YPDVFAHF_		M(1)YPDVFAHF		M(150)YPDVFAHF	0	0	1		ENSG00000173599|ENST00000393960|PC;ENST00000528224.1_1_11:66616372-66617354:-|nuORF	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7526245117188	2	571.75241	1141.49027	0.13366	7.642E-05	0.11187	6.3961E-05	0.24553	0.00014038	571.7525054052987	65.363	1.7262	65.363	64.727	66.453	0					227	62	5	0	0	0	6.8028E-05	5	16278	16236;16278;16320;16361;16406		146.01	133.48	1	6807300			30126	6735	17428	17429	37116;37117;37118;37119;37120	37117		770			-0.0748187869985486
MYPDVFAHF	9	Oxidation (M)	_M(Oxidation (M))YPDVFAHF_		M(1)YPDVFAHF		M(130)YPDVFAHF	0	0	1		ENSG00000173599|ENST00000393960|PC;ENST00000528224.1_1_11:66616372-66617354:-|nuORF	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.752685546875	2	571.75241	1141.49027	0.037006	2.1159E-05	0.23544	0.00013462	0.27245	0.00015577	571.7525884546346	65.225	1.7309	65.314	64.742	66.472	0.088882					214	63	5	0	0	0	0.00033206	5	16242	16194;16242;16284;16328;16377		131.3	116.46	1	7674400			30127	6735	17428	17429	37121;37122;37123;37124;37125	37122		770			-0.0748187869985486
MYPDVFAHF	9	Oxidation (M)	_M(Oxidation (M))YPDVFAHF_		M(1)YPDVFAHF		M(120)YPDVFAHF	0	0	1		ENSG00000173599|ENST00000393960|PC;ENST00000528224.1_1_11:66616372-66617354:-|nuORF	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7527465820312	2	571.75241	1141.49027	0.1112	6.358E-05	0.13488	7.7119E-05	0.24608	0.0001407	571.7525391636779	65.358	1.6576	65.347	64.75	66.408	-0.011337					211	60	5	0	0	0	0.0014051	5	16233	16233;16286;16334;16388;16432		117.6	106.77	1	8176800			30128	6735	17428	17429	37126;37127;37128;37129;37130	37126		770			-0.0748187869985486
MYPFQIHSI	9	Oxidation (M)	_M(Oxidation (M))YPFQIHSI_		M(1)YPFQIHSI		M(69)YPFQIHSI	0	0	1		ENSG00000101290|ENST00000460006|CDS2;ENST00000379070.3_1_20:5157275-5170877:+|nuORF	ENSG00000101290|ENST00000460006|CDS2	ENSG00000101290|ENST00000460006|CDS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.2820434570312	2	576.281334	1150.54812	0.36712	0.00021156	0.32479	0.00018717	0.69191	0.00039873	576.2813961019331	57.785	1.0921	57.87	57.404	58.496	0.085621					73	39	3	0	0	0	0.016723	3	13911	13883;13911;14036		69.105	57.722	1	1069600			30129	1679	17429	17430	37131;37132;37133	37132		206			-0.021136167744089107
MYPPAFRF	8	Oxidation (M)	_M(Oxidation (M))YPPAFRF_		M(1)YPPAFRF		M(74)YPPAFRF	0	0	1		ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7525024414062	2	522.752213	1043.48987	0.84695	0.00044274	-1.6425	-0.00085862	-0.79555	-0.00041587	522.7511333393037	56.024	1.8686	56.024	55.431	57.299	0					144	68	3	0	0	0	0.058048	2	13316	13316;13367		74.396	47.513	1	1900600			30130	10757;12577	17430	17431	37134;37135	37134		949			-0.030132536290466305
MYPPAFRF	8	Oxidation (M)	_M(Oxidation (M))YPPAFRF_		M(1)YPPAFRF		M(54)YPPAFRF	0	0	1		ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7525024414062	2	522.752213	1043.48987	0.77478	0.00040502	-1.2951	-0.00067704	-0.52036	-0.00027202	522.7513280672274	55.962	1.9115	56.033	55.446	57.357	0.070885					160	70	4	0	0	0	0.13961	1	13297	13297		53.576	53.576	1	1793000			30131	10757;12577	17430	17431	37136	37136		949			-0.030132536290466305
MYPPAFRF	8	Oxidation (M)	_M(Oxidation (M))YPPAFRF_		M(1)YPPAFRF		M(54)YPPAFRF	0	0	1		ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-3|TBXAS1	ENST00000462275.5_1_7:139529186-139716213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7508544921875	2	522.752213	1043.48987	0.91058	0.00047601	-1.8025	-0.00094227	-0.89193	-0.00046626	522.7512229268841	56.178	1.8761	56.159	55.565	57.441	-0.019077					149	68	3	0	0	0	0.13961	2	13426	13358;13426		53.576	42.752	1	2172200			30132	10757;12577	17430	17431	37137;37138	37138		949			-0.030132536290466305
MYPPSLQTL	9	Unmodified	_MYPPSLQTL_					0	0	0			REV__HERVH-int_dup515|chr2:34793914-34794525:+|2.1477617939098304|0.3159007483226581|2.77|519.0|14|3|sense	REV__HERVH-int_dup515|chr2:34793914-34794525:+|2.1477617939098304|0.3159007483226581|2.77|519.0|14|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2686157226562	2	525.270435	1048.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.02	1	101.04	100.54	101.54	0.027206								0	0	0	0.24522	1	26956	26956		7.9102	0.62092	1		+		30133	22743	17431	17432	37139	37139					0.0039957847700407
MYPRLGGFVM	10	2 Oxidation (M)	_M(Oxidation (M))YPRLGGFVM(Oxidation (M))_		M(1)YPRLGGFVM(1)		M(75)YPRLGGFVM(75)	0	0	2		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.7883911132812	2	601.788469	1201.56239	0.4044	0.00024337	0.91586	0.00055116	1.3203	0.00079452	601.789127897764	53.135	1.0063	53.125	52.631	53.637	-0.0096054					52	37	2	0	0	0	0.017063	1	12505	12505		74.929	57.987	1	548090			30134	3229	17432	17433	37140	37140		412;413			-0.030332876177453727
MYPRLGGFVM	10	2 Oxidation (M)	_M(Oxidation (M))YPRLGGFVM(Oxidation (M))_					0	0	2		ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	601.788469	1201.56239	0.71614	0.00043096	3.1266	0.0018816	3.8427	0.0023125	601.7896128059402	53.251	0.52138	53.307	53.013	53.535	0.056259	0.17602	0.0021686	NaN	74.929	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329640			30135	3229	17432	17433				412;413			-0.030332876177453727
MYPTYFLHL	9	Oxidation (M)	_M(Oxidation (M))YPTYFLHL_		M(1)YPTYFLHL		M(100)YPTYFLHL	0	0	1		ENSG00000166402|ENST00000299506|TUB;nc|ENSG00000166402|P50607-2|TUB	ENSG00000166402|ENST00000299506|TUB	ENSG00000166402|ENST00000299506|TUB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.7916259765625	2	600.791535	1199.56852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.078	1	70.144	69.644	70.644	0.066048								0	0	0	0.00044853	1	17737	17737		104.8	85.542	1				30136	6073	17433	17434	37141	37141		710			-0.02328446114597682
MYPTYFLHL	9	Oxidation (M)	_M(Oxidation (M))YPTYFLHL_		M(1)YPTYFLHL		M(60)YPTYFLHL	0	0	1		ENSG00000166402|ENST00000299506|TUB;nc|ENSG00000166402|P50607-2|TUB	ENSG00000166402|ENST00000299506|TUB	ENSG00000166402|ENST00000299506|TUB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.7918701171875	2	600.791535	1199.56852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.244	1	70.222	69.722	70.722	-0.022087								0	0	0	0.051692	1	17779	17779		60.39	48.149	1				30137	6073	17433	17434	37142	37142		710			-0.02328446114597682
MYPVESVAW	9	Unmodified	_MYPVESVAW_					0	0	0		nc|ENSG00000008083|Q92833-2|JARID2	nc|ENSG00000008083|Q92833-2|JARID2	nc|ENSG00000008083|Q92833-2|JARID2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2877807617188	2	541.254785	1080.49502	0.5546	0.00030018	-1.9848	-0.0010743	-1.4302	-0.00077412	541.2543852768442	62.413	0.34499	62.413	62.266	62.611	0					18	12	2	0	0	0	0.2451	1	15423	15423		15.847	4.2069	1	89078			30138	12561	17434	17435	37143	37143					-0.042009945570725904
MYPVESVAW	9	Unmodified	_MYPVESVAW_					0	0	0		nc|ENSG00000008083|Q92833-2|JARID2	nc|ENSG00000008083|Q92833-2|JARID2	nc|ENSG00000008083|Q92833-2|JARID2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2877197265625	2	541.254785	1080.49502	0.61637	0.00033362	-2.1975	-0.0011894	-1.5811	-0.00085579	541.2543891398183	62.378	0.44824	62.369	62.094	62.542	-0.0085526					19	16	2	0	0	0	0.2451	1	15391	15391		15.847	7.2539	1	121500			30139	12561	17434	17435	37144	37144					-0.042009945570725904
MYPYIFHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIFHVL_		M(1)YPYIFHVL		M(130)YPYIFHVL	0	0	1		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.80224609375	2	599.801903	1197.58925	0.55958	0.00033564	-0.094241	-5.6526E-05	0.46534	0.00027911	599.8017744701372	72.539	2.1749	72.539	71.718	73.893	0					189	78	3	0	0	0	0.00070004	7	18371	18371;18445;18492;18540;18581;18635;18688		126.6	111.76	1	2461400			30140	12572	17435	17436	37145;37146;37147;37148;37149;37150;37151	37145		964			-0.0016385573494517303
MYPYIFHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIFHVL_		M(1)YPYIFHVL		M(130)YPYIFHVL	0	0	1		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.8020629882812	2	599.801903	1197.58925	0.61946	0.00037155	-0.015386	-9.2288E-06	0.60407	0.00036232	599.8017833557778	72.467	1.9951	72.523	71.757	73.752	0.056572					200	72	4	0	0	0	0.00070004	6	18430	18430;18478;18520;18561;18615;18667		126.6	114.07	1	2764300			30141	12572	17435	17436	37152;37153;37154;37155;37156;37157	37152		964			-0.0016385573494517303
MYPYIFHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIFHVL_		M(1)YPYIFHVL		M(130)YPYIFHVL	0	0	1		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.8021240234375	2	599.801903	1197.58925	0.49996	0.00029987	0.11348	6.8067E-05	0.61344	0.00036794	599.8018132364411	72.6	2.118	72.571	71.711	73.829	-0.029305					199	76	4	0	0	0	0.00070004	5	18475	18475;18523;18565;18616;18670		126.6	126.6	1	2895300			30142	12572	17435	17436	37158;37159;37160;37161;37162	37158		964			-0.0016385573494517303
MYPYIYHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIYHVL_		M(1)YPYIYHVL		M(130)YPYIYHVL	0	0	1		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.3016357421875	2	607.79936	1213.58417	0.45661	0.00027753	-1.0938	-0.0006648	-0.63717	-0.00038727	607.7993453901655	62.409	1.3876	62.409	61.652	63.039	0					156	51	4	0	0	0	0.00070004	3	15432	15378;15432;15480		126.6	116.53	1	693250			30143	7427	17436	17437	37163;37164;37165	37164		821			-0.01408159597554004
MYPYIYHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIYHVL_		M(1)YPYIYHVL		M(130)YPYIYHVL	0	0	1		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.7996215820312	2	607.79936	1213.58417	0.40825	0.00024813	-0.85292	-0.00051841	-0.44467	-0.00027027	607.799424959746	62.367	1.3425	62.464	61.701	63.043	0.096985					164	48	4	0	0	0	0.00070004	3	15400	15330;15400;15445		126.6	117.85	1	756820			30144	7427	17436	17437	37166;37167;37168	37167		821			-0.01408159597554004
MYPYIYHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIYHVL_		M(1)YPYIYHVL		M(130)YPYIYHVL	0	0	1		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.7994995117188	2	607.79936	1213.58417	0.31429	0.00019103	-0.82667	-0.00050245	-0.51238	-0.00031142	607.7994772417492	62.486	1.2366	62.477	61.757	62.994	-0.0085526					145	45	4	0	0	0	0.00070004	4	15415	15316;15363;15415;15461		126.6	116.45	1	775880			30145	7427	17436	17437	37169;37170;37171;37172	37171		821			-0.01408159597554004
MYRSELVV	8	Unmodified	_MYRSELVV_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.M687Wfs*11|1|0.33|ENSG00000030066|chr11:47812323-47812323|T/-|frameshift_variant	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7912292480469	2	498.762778	995.511002	0.48408	0.00024144	0.71885	0.00035853	1.2029	0.00059998	498.76311729389244	82.759	0.63805	82.833	82.572	83.21	0.073097					34	24	2	0	0	0	0.34198	1	21530	21530		10.824	2.2306	1	275940			30146	549	17437	17438	37173	37173					0.013067116798310963
MYRSFNYN	8	Unmodified	_MYRSFNYN_					0	0	0		ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.739990234375	2	547.739834	1093.46511	0.70966	0.00038871	0.60945	0.00033382	1.3191	0.00072253	547.7398399172712	77.187	1.1833	77.242	76.953	78.137	0.05542					125	41	6	0	0	0	0.4354	1	19887	19887		10.824	0.64053	1	1586100			30147	3884	17438	17439	37174	37174					-0.0778793350241358
MYSFVNDKF	9	Oxidation (M)	_M(Oxidation (M))YSFVNDKF_		M(1)YSFVNDKF		M(120)YSFVNDKF	0	0	1		ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000149289|ENST00000278590|ZC3H12C;ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.7633666992188	2	583.762975	1165.5114	0.26819	0.00015656	0.13754	8.0289E-05	0.40573	0.00023685	583.763090575283	52.164	0.51859	52.164	51.836	52.354	0					48	18	4	0	0	0	0.0011116	1	12262	12262		121.35	86.944	1	447030			30148	4857;5749	17439	17440	37175	37175		604			-0.06473913390982489
MYSFVNDKF	9	Oxidation (M)	_M(Oxidation (M))YSFVNDKF_		M(1)YSFVNDKF		M(160)YSFVNDKF	0	0	1		ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000149289|ENST00000278590|ZC3H12C;ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.76318359375	2	583.762975	1165.5114	0.16256	9.4895E-05	0.32854	0.00019179	0.4911	0.00028668	583.7630741313509	52.329	0.60242	52.328	52.008	52.61	-0.00080872					46	21	3	0	0	0	6.549E-06	1	12297	12297		155.95	130.55	1	532910			30149	4857;5749	17439	17440	37176	37176		604			-0.06473913390982489
MYSFVNDKF	9	Oxidation (M)	_M(Oxidation (M))YSFVNDKF_					0	0	1		ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000102053|ENST00000338957|ZC3H12B;ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000149289|ENST00000278590|ZC3H12C;ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	583.762975	1165.5114	0.29812	0.00017403	0.08549	4.9906E-05	0.38361	0.00022394	583.7631433871811	51.974	0.4911	52.024	51.846	52.337	0.050575	-0.14794	-0.00015089	NaN	155.95	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	483470			30150	4857;5749	17439	17440				604			-0.06473913390982489
MYSVNGYTF	9	Oxidation (M)	_M(Oxidation (M))YSVNGYTF_		M(1)YSVNGYTF		M(240)YSVNGYTF	0	0	1		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2345581054688	2	549.23405	1096.45355	0.24635	0.0001353	0.38928	0.00021381	0.63563	0.00034911	549.2343803293652	61.49	3.2152	61.49	61.022	64.238	0					334	119	5	0	0	0	4.8913000000000006E-24	10	15067	15020;15067;15115;15159;15208;15251;15306;15361;15424;15489		240.41	179.05	1	23238000			30151	632	17440	17441	37177;37178;37179;37180;37181;37182;37183;37184;37185;37186	37178		75			-0.09082175316416397
MYSVNGYTF	9	Oxidation (M)	_M(Oxidation (M))YSVNGYTF_		M(1)YSVNGYTF		M(260)YSVNGYTF	0	0	1		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2347412109375	2	549.23405	1096.45355	0.16962	9.3159E-05	0.42429	0.00023304	0.59391	0.00032619	549.2344267837444	61.407	3.3297	61.504	61.065	64.395	0.096989					320	121	5	0	0	0	1.1423E-32	9	15096	14997;15048;15096;15148;15196;15247;15293;15342;15396		258.11	186.98	1	24389000			30152	632	17440	17441	37187;37188;37189;37190;37191;37192;37193;37194;37195	37189		75			-0.09082175316416397
MYSVNGYTF	9	Oxidation (M)	_M(Oxidation (M))YSVNGYTF_		M(1)YSVNGYTF		M(260)YSVNGYTF	0	0	1		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2344360351562	2	549.23405	1096.45355	0.20708	0.00011373	0.43659	0.00023979	0.64367	0.00035352	549.234420570024	61.467	3.785	61.457	61.077	64.862	-0.0094566					299	138	4	0	0	0	1.1423E-32	10	15066	15020;15066;15114;15160;15210;15254;15298;15349;15414;15462		258.11	186.98	1	25866000			30153	632	17440	17441	37196;37197;37198;37199;37200;37201;37202;37203;37204;37205	37197		75			-0.09082175316416397
MYSVTMTNGAL	11	Unmodified	_MYSVTMTNGAL_					0	0	0			REV__nc|ENSG00000164638|Q7RTT9-2|SLC29A4	REV__nc|ENSG00000164638|Q7RTT9-2|SLC29A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.27587890625	2	594.275392	1186.53623	0.61804	0.00036729	0.26238	0.00015593	0.88042	0.00052321	594.2754375134441	40.613	0.68898	40.706	40.42	41.109	0.092674					81	25	5	0	0	0	0.18241	1	8675	8675		32.786	5.1569	1	1518600	+		30154	17169	17441	17442	37206	37206					-0.04957601579894799
MYSVTMTNGAL	11	Unmodified	_MYSVTMTNGAL_					0	0	0			REV__nc|ENSG00000164638|Q7RTT9-2|SLC29A4	REV__nc|ENSG00000164638|Q7RTT9-2|SLC29A4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	594.275392	1186.53623	0.26707	0.00015871	0.60776	0.00036118	0.87483	0.00051989	594.2756950900942	41.001	0.80883	41.001	40.604	41.413	0	0.19922	0.00022953	NaN	32.786	77	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1177400	+		30155	17169	17441	17442							-0.04957601579894799
MYSVTMTNGAL	11	Unmodified	_MYSVTMTNGAL_					0	0	0			REV__nc|ENSG00000164638|Q7RTT9-2|SLC29A4	REV__nc|ENSG00000164638|Q7RTT9-2|SLC29A4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	594.275392	1186.53623	0.61804	0.00036729	0.26238	0.00015593	0.88042	0.00052321	594.2754375134441	40.613	0.68898	40.706	40.42	41.109	0.092674	-0.096327	-0.00018097	NaN	32.786	81	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1518600	+		30156	17169	17441	17442							-0.04957601579894799
MYSVTMTNGAL	11	Unmodified	_MYSVTMTNGAL_					0	0	0			REV__nc|ENSG00000164638|Q7RTT9-2|SLC29A4	REV__nc|ENSG00000164638|Q7RTT9-2|SLC29A4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	594.275392	1186.53623	0.41587	0.00024714	0.55561	0.00033018	0.97148	0.00057733	594.2755373608317	40.6	0.80922	40.699	40.427	41.236	0.099407	-0.10289	0.00016755	NaN	32.786	67	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1630900	+		30157	17169	17441	17442							-0.04957601579894799
MYSYVTEEL	9	Oxidation (M)	_M(Oxidation (M))YSYVTEEL_		M(1)YSYVTEEL		M(110)YSYVTEEL	0	0	1		ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7525634765625	2	575.752272	1149.48999	0.37383	0.00021524	0.42555	0.00024501	0.79939	0.00046025	575.75258096462	58.023	0.65187	58.109	57.788	58.44	0.085617					38	23	2	0	0	0	0.0022761	1	14066	14066		108	108	1	297640			30158	4257	17442	17443	37207	37207		544			-0.0787734321033895
MYSYVTEEL	9	Oxidation (M)	_M(Oxidation (M))YSYVTEEL_		M(1)YSYVTEEL		M(65)YSYVTEEL	0	0	1		ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	ENSG00000139684|ENST00000378720|ESD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2821044921875	2	575.752272	1149.48999	0.58625	0.00033754	0.26951	0.00015517	0.85576	0.00049271	575.752319735156	58.28	0.64828	58.263	58.005	58.653	-0.0172					40	23	2	0	0	0	0.066761	1	14156	14156		65.235	65.235	1	338510			30159	4257	17442	17443	37208	37208		544			-0.0787734321033895
MYTGLLTEI	9	Oxidation (M)	_M(Oxidation (M))YTGLLTEI_		M(1)YTGLLTEI		M(55)YTGLLTEI	0	0	1		ENSG00000012504|ENST00000392986|NR1H4;nc|ENSG00000012504|Q96RI1|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8138427734375	2	528.767726	1055.5209	0.58039	0.00030689	0.83157	0.00043971	1.412	0.0007466	528.7679903693942	72.076	1.0864	72.076	71.639	72.726	0					99	39	3	0	0	0	0.090484	1	18361	18361		54.774	12.679	1	479550			30160	452	17443	17444	37209	37209		50			-0.004641451054567369
MYTGLLTEI	9	Oxidation (M)	_M(Oxidation (M))YTGLLTEI_		M(1)YTGLLTEI		M(78)YTGLLTEI	0	0	1		ENSG00000012504|ENST00000392986|NR1H4;nc|ENSG00000012504|Q96RI1|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.81396484375	2	528.767726	1055.5209	0.55257	0.00029218	0.62607	0.00033105	1.1786	0.00062323	528.7679867275841	72.163	1.0094	72.22	71.783	72.792	0.056572					77	36	4	0	0	0	0.030157	1	18372	18372		78.149	36.055	1	491260			30161	452	17443	17444	37210	37210		50			-0.004641451054567369
MYTGLLTEI	9	Oxidation (M)	_M(Oxidation (M))YTGLLTEI_		M(1)YTGLLTEI		M(55)YTGLLTEI	0	0	1		ENSG00000012504|ENST00000392986|NR1H4;nc|ENSG00000012504|Q96RI1|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8140258789062	2	528.767726	1055.5209	0.58908	0.00031149	0.6599	0.00034893	1.249	0.00066042	528.7679143301341	72.212	0.97649	72.185	71.793	72.769	-0.027275					78	34	3	0	0	0	0.090484	1	18411	18411		54.774	18.729	1	579440			30162	452	17443	17444	37211	37211		50			-0.004641451054567369
MYTKLFVGF	9	Oxidation (M)	_M(Oxidation (M))YTKLFVGF_		M(1)YTKLFVGF		M(100)YTKLFVGF	0	0	1		nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;ENST00000461187.5_1_2:130911777-130913705:-|nuORF	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2886962890625	2	561.288628	1120.5627	0.37041	0.00020791	0.89796	0.00050401	1.2684	0.00071192	561.2885307128029	64.651	1.2883	64.651	64.288	65.577	0					113	46	3	0	0	0	0.0051609	1	16062	16062		103.35	59.495	1	1291300			30163	12719	17444	17445	37212	37212		975			0.007244553737336901
MYTKLFVGF	9	Oxidation (M)	_M(Oxidation (M))YTKLFVGF_		M(1)YTKLFVGF		M(63)YTKLFVGF	0	0	1		nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;ENST00000482171.5_1_2:130912606-130913705:-|nuORF;ENST00000461187.5_1_2:130911777-130913705:-|nuORF	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.30322265625	2	561.288628	1120.5627	0.30256	0.00016982	0.7303	0.00040991	1.0329	0.00057973	561.2886292972806	64.806	1.0853	64.797	64.339	65.424	-0.0095291					104	39	4	0	0	0	0.023967	1	16186	16186		62.573	34.086	1	1342200			30164	12719	17444	17445	37213	37213		975			0.007244553737336901
MYTLGITNF	9	Oxidation (M)	_M(Oxidation (M))YTLGITNF_		M(1)YTLGITNF		M(140)YTLGITNF	0	0	1		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2605590820312	2	538.260068	1074.50558	0.56415	0.00030366	0.076127	4.0976E-05	0.64028	0.00034464	538.2601269238769	72.323	1.8546	72.323	71.911	73.766	0					187	67	4	0	0	0	0.00012108	3	18451	18409;18451;18500		137.42	62.495	1	5259500			30165	2353	17445	17446	37214;37215;37216	37215		290			-0.02869011902657803
MYTLGITNF	9	Oxidation (M)	_M(Oxidation (M))YTLGITNF_		M(1)YTLGITNF		M(140)YTLGITNF	0	0	1		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2603759765625	2	538.260068	1074.50558	0.56945	0.00030651	-0.021999	-1.1841E-05	0.54745	0.00029467	538.2600787361146	72.322	1.7161	72.379	71.949	73.666	0.056572					188	62	4	0	0	0	0.00012108	4	18386	18352;18386;18428;18521		137.42	72.189	1	5230500			30166	2353	17445	17446	37217;37218;37219;37220	37218		290			-0.02869011902657803
MYTLGITNF	9	Oxidation (M)	_M(Oxidation (M))YTLGITNF_		M(1)YTLGITNF		M(110)YTLGITNF	0	0	1		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2604370117188	2	538.260068	1074.50558	0.61948	0.00033344	0.065241	3.5117E-05	0.68472	0.00036856	538.2600773853553	72.366	1.7701	72.338	71.925	73.695	-0.027275					188	63	5	0	0	0	0.0016712	3	18410	18410;18455;18498		114.2	49.716	1	5432500			30167	2353	17445	17446	37221;37222;37223	37221		290			-0.02869011902657803
MYTVFEHTF	9	Oxidation (M)	_M(Oxidation (M))YTVFEHTF_		M(1)YTVFEHTF		M(130)YTVFEHTF	0	0	1		ENSG00000106105|ENST00000389266|GARS1;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.7633056640625	2	595.762975	1189.5114	0.83287	0.00049619	-0.061354	-3.6552E-05	0.77152	0.00045964	595.762712109234	56.432	0.52485	56.511	56.384	56.909	0.078671					32	19	2	0	0	0	0.00056175	1	13568	13568		128.37	84.507	1	550850			30168	2058	17446	17447	37224	37224		253			-0.07577913390991853
MYTVFEHTF	9	Oxidation (M)	_M(Oxidation (M))YTVFEHTF_		M(1)YTVFEHTF		M(120)YTVFEHTF	0	0	1		ENSG00000106105|ENST00000389266|GARS1;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.7623901367188	2	595.762975	1189.5114	0.90936	0.00054176	0.064313	3.8315E-05	0.97367	0.00058008	595.7628744785887	56.796	0.60378	56.777	56.511	57.115	-0.019081					36	21	2	0	0	0	0.0015545	1	13661	13661		115.69	75.742	1	686660			30169	2058	17446	17447	37225	37225		253			-0.07577913390991853
MYVFLWLT	8	Unmodified	_MYVFLWLT_					0	0	0			REV__ENST00000360472.8_1_1:160183409-160183475:+|nuORF	REV__ENST00000360472.8_1_1:160183409-160183475:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2794189453125	2	536.780439	1071.54633	0.52024	0.00027925	-0.80798	-0.00043371	-0.28774	-0.00015445	536.7800678161336	39.836	0.86684	39.929	39.607	40.474	0.09267					70	30	3	0	0	0	0.34247	1	8548	8548		8.5933	8.5933	1	985240	+		30170	20257	17447	17448	37226	37226					0.013413742076181734
MYVSIVFF	8	Unmodified	_MYVSIVFF_					0	0	0		ENSG00000174944|ENST00000309170|P2RY14	ENSG00000174944|ENST00000309170|P2RY14	ENSG00000174944|ENST00000309170|P2RY14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.8290100097656	2	503.259339	1004.50413	0.34818	0.00017522	3.1601	0.0015903	3.5082	0.0017656	503.26123742619086	51.77	0.40945	51.817	51.647	52.056	0.046574					24	14	2	0	0	0	0.34046	1	12085	12085		14.582	1.0738	1	258890			30171	6829	17448	17449	37227	37227					0.0020539879926673166
MYVTWFFWFWN	11	Unmodified	_MYVTWFFWFWN_					0	0	0		ENSG00000186908|ENST00000426126|ZDHHC17	ENSG00000186908|ENST00000426126|ZDHHC17	ENSG00000186908|ENST00000426126|ZDHHC17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.9008483886719	4	407.436421	1625.71658	-0.094014	-3.8305E-05	1.3265	0.00054046	1.2325	0.00050216	407.4369568890858	17.181	0.70816	17.181	16.952	17.66	0					31	24	2	0	0	0	0.33352	1	1671	1671		0.08335	0.08335	1	69716			30172	7655	17449	17450	37228	37228					-0.07125134860757498
MYVVILLGN	9	Unmodified	_MYVVILLGN_					0	0	0		ENSG00000277556|ENST00000374779|OR13C5;ENSG00000276119|ENST00000542196|OR13C2;ENSG00000136839|ENST00000259362|OR13C9	ENSG00000277556|ENST00000374779|OR13C5	ENSG00000277556|ENST00000374779|OR13C5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.29034423828125	2	511.291171	1020.56779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.32	1	114.32	113.82	114.82	0								0	0	0	0.26258	1	29663	29663		2.3027	0	1				30173	4003	17450	17451	37229	37229					0.05832759236352558
MYVVILLGN	9	Unmodified	_MYVVILLGN_					0	0	0		ENSG00000277556|ENST00000374779|OR13C5;ENSG00000276119|ENST00000542196|OR13C2;ENSG00000136839|ENST00000259362|OR13C9	ENSG00000277556|ENST00000374779|OR13C5	ENSG00000277556|ENST00000374779|OR13C5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2899169921875	2	511.291171	1020.56779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.86	1	119.89	119.39	120.39	0.027756								0	0	0	0.26258	1	30987	30987		2.3027	0	1				30174	4003	17450	17451	37230	37230					0.05832759236352558
MYWHVRFL	8	Unmodified	_MYWHVRFL_					0	0	0		ENST00000555235.1_1_14:103966361-103969561:+|nuORF	ENST00000555235.1_1_14:103966361-103969561:+|nuORF	ENST00000555235.1_1_14:103966361-103969561:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.2925415039062	2	576.294579	1150.57461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.94	1	113.92	113.42	114.42	-0.019096								0	0	0	0.37664	1	29601	29601		2.5775	0.27475	1				30175	11845	17451	17452	37231	37231					0.005341169075791186
NAAERRGPL	9	Unmodified	_NAAERRGPL_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.27294921875	2	492.27269	982.530826	0.23829	0.00011731	0.031578	1.5545E-05	0.26987	0.00013285	492.2727890833119	16.354	0.74689	16.354	16.063	16.81	0					90	25	5	0	0	0	0.0016361	3	1306	1260;1306;1348		114.65	60.816	1	2103000			30176	8212	17452	17453	37232;37233;37234	37233					0.038862237347984774
NAAERRGPL	9	Unmodified	_NAAERRGPL_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2727966308594	2	492.27269	982.530826	0.16241	7.995E-05	0.098111	4.8297E-05	0.26052	0.00012825	492.2727959930621	16.492	1.1593	16.378	16.075	17.234	-0.11434					114	41	5	0	0	0	0.0042138	3	1389	1298;1347;1389		92.653	54.478	1	2238300			30177	8212	17452	17453	37235;37236;37237	37237					0.038862237347984774
NAAERRGPL	9	Unmodified	_NAAERRGPL_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.27288818359375	2	492.27269	982.530826	0.27642	0.00013607	0.026533	1.3062E-05	0.30295	0.00014913	492.272765043843	16.374	1.1521	16.311	15.975	17.127	-0.062534					106	40	5	0	0	0	0.0028626	3	1309	1259;1309;1351		103.35	57.654	1	2338200			30178	8212	17452	17453	37238;37239;37240	37239					0.038862237347984774
NAAGVGPASGI	11	Unmodified	_NAAGVGPASGI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7565002441406	2	457.240524	912.466495	0.029673	1.3568E-05	-0.069092	-3.1592E-05	-0.039419	-1.8024E-05	457.2404373636341	23.625	0.76668	23.553	23.257	24.024	-0.072559					42	26	3	0	0	0	0.32855	1	3451	3451		10.8	2.8894	1	134830			30179	5186	17453	17454	37241	37241					0.0067602385800000775
NAAIIMKV	8	Oxidation (M)	_NAAIIM(Oxidation (M))KV_		NAAIIM(1)KV		NAAIIM(78)KV	0	0	1		ENSG00000130755|ENST00000597595|GMFG	ENSG00000130755|ENST00000597595|GMFG	ENSG00000130755|ENST00000597595|GMFG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.8639221191406	2	438.254588	874.494624	0.11477	5.0296E-05	0.35091	0.00015379	0.46568	0.00020408	438.2545536985029	31.761	0.57023	31.803	31.574	32.144	0.042366					28	19	2	0	0	0	0.10754	1	5980	5980		78.149	78.149	1	239370			30180	3508	17454	17455	37242	37242		444			0.05235630513743672
NAAIIMKV	8	Oxidation (M)	_NAAIIM(Oxidation (M))KV_					0	0	1		ENSG00000130755|ENST00000597595|GMFG	ENSG00000130755|ENST00000597595|GMFG	ENSG00000130755|ENST00000597595|GMFG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	438.254588	874.494624	0.10257	4.495E-05	0.96725	0.0004239	1.0698	0.00046885	438.2550572941505	31.922	0.75506	31.922	31.636	32.391	0	0.05935	0.00043788	NaN	78.149	33	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261190			30181	3508	17454	17455				444			0.05235630513743672
NAAPLSNTK	9	Unmodified	_NAAPLSNTK_					0	0	0		nc|ENSG00000118482|Q92576-2|PHF3;PHF3|p.K1984Vfs*4|1|0.04|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACT|frameshift_variant;PHF3|p.K1984Vfs*10|1|0.06|ENSG00000118482|chr6:63713536-63713537|-/TGTGAATCACTAT|frameshift_variant;ENSG00000118482|ENST00000262043|PHF3;PHF3|p.Q551Tfs*3|1|0.44|ENSG00000118482|chr6:63685365-63685366|-/A|frameshift_variant	nc|ENSG00000118482|Q92576-2|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7581787109375	2	458.248349	914.482145	0.029034	1.3305E-05	-0.075663	-3.4673E-05	-0.04663	-2.1368E-05	458.2482331941353	22.798	0.75197	22.753	22.553	23.305	-0.044867					55	26	4	0	0	0	0.2719	1	3368	3368		13.042	0.51092	1	256520			30182	2826	17455	17456	37243	37243					0.02148310375048368
NAATFATVTV	10	Unmodified	_NAATFATVTV_					0	0	0		nc|ENSG00000197119|Q8N8R3-3|SLC25A29;ENSG00000197119|ENST00000359232|SLC25A29	nc|ENSG00000197119|Q8N8R3-3|SLC25A29	nc|ENSG00000197119|Q8N8R3-3|SLC25A29	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7518615722656	2	497.763832	993.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.094	1	14.984	14.484	15.484	-0.10981								0	0	0	0.35216	1	925	925		13.906	0	1				30183	7930	17456	17457	37244	37244					0.016094636892944436
NADLLIPV	8	Unmodified	_NADLLIPV_					0	0	0			REV__ENSG00000136854|ENST00000373299|STXBP1	REV__ENSG00000136854|ENST00000373299|STXBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.75262451171875	2	427.752736	853.490919	-0.015176	-6.4915E-06	-0.059275	-2.5355E-05	-0.074451	-3.1847E-05	427.7526464594389	81.864	0.68029	81.84	81.457	82.137	-0.02404					66	28	3	0	0	0	0.32038	1	21392	21392		28.487	0	1	1055700	+		30184	15830	17457	17458	37245	37245					0.05831284011514981
NADSSELFL	9	Unmodified	_NADSSELFL_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.28155517578125	2	498.237647	994.460741	0.45067	0.00022454	0.87591	0.00043641	1.3266	0.00066095	498.2383519689819	68.833	0.72612	68.833	68.643	69.369	0					49	25	3	0	0	0	0.22674	1	17386	17386		22.736	3.4793	1	313150	+		30185	14758	17458	17459	37246	37246					-0.03671119444334181
NADSSELFL	9	Unmodified	_NADSSELFL_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.28173828125	2	498.237647	994.460741	0.45841	0.0002284	1.2133	0.0006045	1.6717	0.0008329	498.2383943515555	68.84	0.70114	68.912	68.563	69.264	0.071938					55	25	3	0	0	0	0.20167	1	17343	17343		29.082	9.8246	1	311670	+		30186	14758	17458	17459	37247	37247					-0.03671119444334181
NAFIVSAI	8	Unmodified	_NAFIVSAI_					0	0	0		ENST00000467733.1_1_3:156262080-156272878:-|nuORF;ENSG00000114850|ENST00000265044|SSR3;nc|ENSG00000114850|Q9UNL2-2|SSR3	ENST00000467733.1_1_3:156262080-156272878:-|nuORF	ENST00000467733.1_1_3:156262080-156272878:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.73974609375	2	417.739628	833.464704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.511	1	68.492	67.992	68.992	-0.019157								0	0	0	0.16508	1	17251	17251		49.933	5.526	1				30187	2586	17459	17460	37248	37248					0.04131014840049829
NAFLEKKTV	9	Unmodified	_NAFLEKKTV_					0	0	0		ENSG00000196199|ENST00000361479|MPHOSPH8;nc|ENSG00000196199|Q99549-2|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.302978515625	2	525.303124	1048.5917	0.4111	0.00021595	-0.077505	-4.0713E-05	0.3336	0.00017524	525.3029584376214	26.532	0.63251	26.532	26.321	26.953	0					47	21	3	0	0	0	0.0018978	2	4380	4380;4435		111.31	74.803	1	287810			30188	7836	17460	17461	37249;37250	37249					0.06934315994362805
NAFLEKKTV	9	Unmodified	_NAFLEKKTV_					0	0	0		ENSG00000196199|ENST00000361479|MPHOSPH8;nc|ENSG00000196199|Q99549-2|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3031005859375	2	525.303124	1048.5917	0.39367	0.00020679	-0.059098	-3.1044E-05	0.33457	0.00017575	525.3029437568047	26.557	0.70484	26.518	26.263	26.968	-0.038671					51	24	3	0	0	0	0.067514	1	4391	4391		69.338	45.548	1	323750			30189	7836	17460	17461	37251	37251					0.06934315994362805
NAFLEKKTV	9	Unmodified	_NAFLEKKTV_					0	0	0		ENSG00000196199|ENST00000361479|MPHOSPH8;nc|ENSG00000196199|Q99549-2|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	ENSG00000196199|ENST00000361479|MPHOSPH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.30322265625	2	525.303124	1048.5917	0.66697	0.00035036	-0.4068	-0.00021369	0.26018	0.00013667	525.3028467877216	26.585	0.6222	26.563	26.381	27.003	-0.022238					48	21	3	0	0	0	0.082647	1	4390	4390		61.602	38.866	1	351770			30190	7836	17460	17461	37252	37252					0.06934315994362805
NAFLSKSSV	9	Unmodified	_NAFLSKSSV_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7578125	2	476.758549	951.502546	-1.2747	-0.00060772	0.18949	9.034E-05	-1.0852	-0.00051738	476.7585340534067	34.925	0.55451	34.925	34.697	35.251	0					32	19	2	0	0	0	0.0083763	1	6931	6931		81.915	45.409	1	568860			30191	6752	17461	17462	37253	37253					0.024854810348642786
NAFLSKSSV	9	Unmodified	_NAFLSKSSV_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7580261230469	2	476.758549	951.502546	-1.2397	-0.00059103	0.26487	0.00012628	-0.9748	-0.00046475	476.7584980193195	34.834	0.54813	34.909	34.713	35.261	0.075306					37	19	3	0	0	0	0.05849	1	6962	6962		49.742	31.369	1	546050			30192	6752	17461	17462	37254	37254					0.024854810348642786
NAFLSKSSV	9	Unmodified	_NAFLSKSSV_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.7580871582031	2	476.758549	951.502546	-0.70876	-0.00033791	0.10711	5.1065E-05	-0.60166	-0.00028684	476.7583418182138	34.826	0.6396	34.904	34.644	35.283	0.077377					47	22	4	0	0	0	0.0083763	2	6933	6885;6933		81.915	45.409	1	590250			30193	6752	17461	17462	37255;37256	37256					0.024854810348642786
NAFQYVNSI	9	Unmodified	_NAFQYVNSI_					0	0	0		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2615356445312	2	528.261456	1054.50836	0.544	0.00028737	-0.040046	-2.1155E-05	0.50395	0.00026622	528.2612976111369	63.257	0.68148	63.257	62.984	63.665	0					57	24	3	0	0	0	3.6475E-11	3	15636	15636;15683;15735		191.38	122.28	1	1422600			30194	1901	17462	17463	37257;37258;37259	37257					-0.016714204534764576
NAFQYVNSI	9	Unmodified	_NAFQYVNSI_					0	0	0		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2614135742188	2	528.261456	1054.50836	0.50301	0.00026572	-0.074097	-3.9143E-05	0.42891	0.00022658	528.261296998358	63.143	0.89365	63.238	62.957	63.851	0.095722					62	31	3	0	0	0	3.6475E-11	2	15593	15593;15644		191.38	123.3	1	1603000			30195	1901	17462	17463	37260;37261	37260					-0.016714204534764576
NAFQYVNSI	9	Unmodified	_NAFQYVNSI_					0	0	0		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.261474609375	2	528.261456	1054.50836	0.56172	0.00029673	-0.088182	-4.6583E-05	0.47354	0.00025015	528.2613469427064	63.274	0.8287	63.265	62.994	63.823	-0.0085526					66	29	3	0	0	0	3.6475E-11	3	15634	15634;15691;15743		191.38	123.3	1	1622400			30196	1901	17462	17463	37262;37263;37264	37262					-0.016714204534764576
NAGIEAQVWK	10	Unmodified	_NAGIEAQVWK_					0	0	0		nc|ENSG00000171992|Q8N3V7-3|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2959594726562	2	558.29583	1114.57711	0.40828	0.00022794	0.039797	2.2219E-05	0.44808	0.00025016	558.2957573705629	36.289	1.4279	36.289	35.635	37.063	0					113	51	3	0	0	0	0.14021	1	7403	7403		39.95	5.548	1	1597100			30197	12837	17463	17464	37265	37265					0.024402438462402642
NAHLRGPPPK	10	Unmodified	_NAHLRGPPPK_					0	0	0		ENST00000489526.1_1_10:102762295-102762823:+|nuORF;ENSG00000107816|ENST00000454422|LZTS2	ENST00000489526.1_1_10:102762295-102762823:+|nuORF	ENST00000489526.1_1_10:102762295-102762823:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2969970703125	2	543.811982	1085.60941	0.11509	6.2588E-05	1.1703	0.0006364	1.2854	0.00069899	544.3144027597813	12.285	0.52524	12.285	12.087	12.612	0					26	19	2	0	0	0	0.40106	1	110	110		3.2813	0.28607	1	237760			30198	2149	17464	17465	37266	37266					0.07003076039904954
NAHSNILK	8	Unmodified	_NAHSNILK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.7509765625	2	448.751059	895.487565	0.33063	0.00014837	-1.1951	-0.00053632	-0.8645	-0.00038795	448.7508274395105	20.7	0.73774	20.7	20.371	21.108	0					90	25	6	0	0	0	0.37071	1	2646	2646		22.736	3.4793	1	563540			30199	3619	17465	17466	37267	37267					0.035640339575252256
NAHSNILK	8	Unmodified	_NAHSNILK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7510681152344	2	448.751059	895.487565	0.46911	0.00021051	-1.0616	-0.00047638	-0.59245	-0.00026586	448.7507399840261	20.914	0.76844	20.804	20.466	21.234	-0.11003					72	26	4	0	0	0	0.30853	1	2662	2662		29.841	7.1825	1	607670			30200	3619	17465	17466	37268	37268					0.035640339575252256
NAHSNILK	8	Unmodified	_NAHSNILK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	448.751059	895.487565	0.44323	0.0001989	-1.3454	-0.00060377	-0.90221	-0.00040487	448.75077613411605	20.805	0.86763	20.752	20.418	21.286	-0.05291	9.0011E-05	-0.00014471	NaN	29.841	100	30	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573350			30201	3619	17465	17466							0.035640339575252256
NAIQQWIQW	9	Unmodified	_NAIQQWIQW_					0	0	0			REV__ENST00000588883.5_1_19:44679604-44681824:+|nuORF	REV__ENST00000588883.5_1_19:44679604-44681824:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.332275390625	2	593.803823	1185.59309	0.2567	0.00015243	-3.0064	-0.0017852	-2.7497	-0.0016328	593.8020234606179	57.566	0.32198	57.549	57.337	57.659	-0.0172					16	11	2	0	0	0	0.22596	1	13925	13925		21.747	0	1	204900	+		30202	17381	17466	17467	37269	37269					0.007719500831171899
NAISLPTI	8	Unmodified	_NAISLPTI_					0	0	0		ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.7448425292969	2	414.744911	827.475269	0.003492	1.4483E-06	-0.082049	-3.4029E-05	-0.078557	-3.2581E-05	414.7448421182215	68.392	1.1565	68.392	68.101	69.257	0					78	42	2	0	0	0	0.018723	2	17209	17209;17308		103.75	22.135	1	1067500			30203	5657	17467	17468	37270;37271	37270					0.054629974944646165
NAISLPTI	8	Unmodified	_NAISLPTI_					0	0	0		ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.74481201171875	2	414.744911	827.475269	0.22819	9.4641E-05	-0.52359	-0.00021716	-0.2954	-0.00012252	414.7447139882629	68.317	1.1392	68.389	68.044	69.183	0.071938					77	41	3	0	0	0	0.0094041	2	17206	17206;17256		118.89	33.538	1	756790			30204	5657	17467	17468	37272;37273	37272					0.054629974944646165
NAISLPTI	8	Unmodified	_NAISLPTI_					0	0	0		ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.7447204589844	2	414.744911	827.475269	0.29982	0.00012435	-0.46074	-0.00019109	-0.16092	-6.674E-05	414.7446680051537	68.423	1.1487	68.404	68.121	69.27	-0.01915					79	40	3	0	0	0	0.016169	2	17209	17209;17262		107.19	25.574	1	724820			30205	5657	17467	17468	37274;37275	37274					0.054629974944646165
NAKAYVETL	9	Unmodified	_NAKAYVETL_					0	0	0			REV__ENSG00000115677|ENST00000310931|HDLBP	REV__ENSG00000115677|ENST00000310931|HDLBP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.78436279296875	2	504.771657	1007.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.919	1	63.91	63.41	64.41	-0.0095329								0	0	0	0.15265	1	15848	15848		34.102	3.4659	1		+		30206	14891	17468	17469	37276	37276					0.025297502063381216
NALDKVLSV	9	Unmodified	_NALDKVLSV_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF	nc|ENSG00000159063|Q9BVK2-2|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2724304199219	2	479.782025	957.549496	0.2336	0.00011208	0.088312	4.2371E-05	0.32191	0.00015445	479.7820070293078	55.262	0.55659	55.262	55.008	55.564	0					22	20	2	0	0	0	0.17263	1	13191	13191		38.615	7.3464	1	260800			30207	5384;11529	17469	17470	37277	37277					0.0690234058599799
NALDKVLSV	9	Unmodified	_NALDKVLSV_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF	nc|ENSG00000159063|Q9BVK2-2|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.782025	957.549496	0.48933	0.00023477	-0.24231	-0.00011626	0.24702	0.00011851	479.7819894377542	55.176	0.41826	55.247	55.028	55.446	0.070885	-0.029086	-3.6661E-05	NaN	42.312	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305040			30208	5384;11529	17469	17470							0.0690234058599799
NALDKVLSV	9	Unmodified	_NALDKVLSV_					0	0	0		nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF	nc|ENSG00000159063|Q9BVK2-2|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF	nc|ENSG00000159063|Q9BVK2-2|ALG8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.782025	957.549496	0.31706	0.00015212	-0.71294	-0.00034206	-0.39588	-0.00018994	479.7817694773974	55.338	0.43342	55.319	55.155	55.588	-0.019077	0.043109	-0.00048826	NaN	42.312	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281800			30209	5384;11529	17469	17470							0.0690234058599799
NALEIASEI	9	Unmodified	_NALEIASEI_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.25579833984375	2	480.25584	958.497126	0.31533	0.00015144	-0.029489	-1.4162E-05	0.28584	0.00013728	480.25570159510727	65.585	0.83183	65.585	65.293	66.124	0					63	29	3	0	0	0	0.00018703	1	16352	16352		145.13	26.235	1	860990			30210	8529;12963;8544;8548	17470	17471	37278	37278					0.01621757452392103
NALEIASEI	9	Unmodified	_NALEIASEI_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2559509277344	2	480.25584	958.497126	0.034395	1.6518E-05	0.34158	0.00016404	0.37597	0.00018056	480.2558427682732	65.478	0.78433	65.567	65.27	66.055	0.088882					60	28	3	0	0	0	0.00052839	1	16306	16306		121.53	25.423	1	833460			30211	8529;12963;8544;8548	17470	17471	37279	37279					0.01621757452392103
NALEIASEI	9	Unmodified	_NALEIASEI_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2558898925781	2	480.25584	958.497126	0.34824	0.00016724	0.050208	2.4113E-05	0.39845	0.00019136	480.2557255942653	65.559	0.88638	65.548	65.257	66.143	-0.011337					69	31	3	0	0	0	0.042824	1	16345	16345		75.761	10.526	1	947510			30212	8529;12963;8544;8548	17470	17471	37280	37280					0.01621757452392103
NALEQQLKEI	10	Unmodified	_NALEQQLKEI_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.8038330078125	2	593.327328	1184.6401	0.40748	0.00024177	0.10733	6.3683E-05	0.51481	0.00030545	593.3273540044999	91.815	0.46633	91.815	91.662	92.128	0					43	29	2	0	0	0	0.31926	1	24452	24452		5.7319	0	1	154820	+		30213	15354	17471	17472	37281	37281					0.055167648436281524
NALGVILQV	9	Unmodified	_NALGVILQV_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;ENST00000494058.5_1_6:31934804-31935971:+|nuORF;ENST00000461915.5_1_6:31934795-31936203:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.787109375	2	463.78711	925.559667	0.19316	8.9584E-05	-0.22889	-0.00010616	-0.035735	-1.6574E-05	463.7870593013225	77.174	2.0023	77.174	76.141	78.144	0					146	73	3	0	0	0	7.827E-05	4	19906	19859;19906;19954;19996		144.35	55.447	1	5862200			30214	8219	17472	17473	37282;37283;37284;37285	37283					0.0939094831123839
NALGVILQV	9	Unmodified	_NALGVILQV_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;ENST00000494058.5_1_6:31934804-31935971:+|nuORF;ENST00000461915.5_1_6:31934795-31936203:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.787109375	2	463.78711	925.559667	0.1585	7.3512E-05	-0.2292	-0.0001063	-0.070698	-3.2789E-05	463.78706316795143	77.079	1.987	77.135	76.4	78.387	0.055412					154	71	3	0	0	0	0.0013036	4	19892	19841;19892;19945;19995		118.89	32.455	1	4981600			30215	8219	17472	17473	37286;37287;37288;37289	37287					0.0939094831123839
NALGVILQV	9	Unmodified	_NALGVILQV_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;ENST00000494058.5_1_6:31934804-31935971:+|nuORF;ENST00000461915.5_1_6:31934795-31936203:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7870788574219	2	463.78711	925.559667	0.53903	0.00024999	-0.51194	-0.00023743	0.027091	1.2565E-05	463.78689838038605	77.257	1.6754	77.226	76.804	78.479	-0.031334					138	61	3	0	0	0	0.00033443	4	19903	19858;19903;19953;20007		131.27	49.404	1	4638200			30216	8219	17472	17473	37290;37291;37292;37293	37291					0.0939094831123839
NALKEMRFL	9	Unmodified	_NALKEMRFL_					0	0	0		nc|ENSG00000086827|O43264-2|ZW10;ENSG00000086827|ENST00000200135|ZW10	nc|ENSG00000086827|O43264-2|ZW10	nc|ENSG00000086827|O43264-2|ZW10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.290771484375	2	561.310426	1120.6063	-0.036544	-2.0512E-05	-3.183	-0.0017867	-3.2196	-0.0018072	561.3087506090018	39.663	0.53852	39.663	39.348	39.886	0					31	19	2	0	0	0	0.20679	1	8418	8418		22.658	2.2045	1	102990			30217	1287	17473	17474	37294	37294					0.05082064870885006
NALNVGKL	8	Unmodified	_NALNVGKL_					0	0	0		nc|ENSG00000243660|B1APH4|ZNF487	nc|ENSG00000243660|B1APH4|ZNF487	nc|ENSG00000243660|B1APH4|ZNF487	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.74481201171875	2	414.750527	827.486502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.489	1	68.489	67.989	68.989	0								0	0	0	0.27914	1	17257	17257		32.117	0	1				30218	12969	17474	17475	37295	37295					0.06585819588610775
NALRTLEAK	9	Unmodified	_NALRTLEAK_					0	0	0			REV__ENSG00000112309|ENST00000230053|B3GAT2	REV__ENSG00000112309|ENST00000230053|B3GAT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2984619140625	2	508.298373	1014.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.632	1	12.533	12.033	13.033	-0.098996								0	0	0	0.25955	1	186	186		3.2813	0	1		+		30219	14771	17475	17476	37296	37296					0.07548547708847764
NANIGMNEVI	10	Unmodified	_NANIGMNEVI_					0	0	0			REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7825927734375	2	537.766049	1073.51754	0.11662	6.2714E-05	0.28655	0.0001541	0.40317	0.00021681	537.7661361254037	25.758	0.46079	25.719	25.47	25.931	-0.038671					23	15	2	0	0	0	0.31642	1	4124	4124		10.8	2.0541	1	162530	+		30220	14328	17476	17477	37297	37297					-0.01627395159448497
NAPLSINI	8	Unmodified	_NAPLSINI_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A;nc|ENSG00000073711|Q06190-2|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A;nc|ENSG00000073711|Q06190-2|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2425537109375	2	421.242535	840.470518	0.086018	3.6235E-05	0.080969	3.4108E-05	0.16699	7.0342E-05	421.2424631933093	63.684	1.1986	63.684	63.34	64.539	0					73	43	3	0	0	0	0.021656	2	15805	15755;15805		99.799	10.895	1	947690			30221	1004;12585	17477	17478	37298;37299	37299					0.04390113351701075
NAPLSINI	8	Unmodified	_NAPLSINI_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A;nc|ENSG00000073711|Q06190-2|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A;nc|ENSG00000073711|Q06190-2|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.24249267578125	2	421.242535	840.470518	0.15708	6.6169E-05	-0.048459	-2.0413E-05	0.10862	4.5756E-05	421.24239145693076	63.545	0.78071	63.641	63.365	64.145	0.095722					52	27	3	0	0	0	0.021656	2	15766	15714;15766		99.799	10.895	1	980070			30222	1004;12585	17477	17478	37300;37301	37301					0.04390113351701075
NAPLSINI	8	Unmodified	_NAPLSINI_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A;nc|ENSG00000073711|Q06190-2|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A;nc|ENSG00000073711|Q06190-2|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.24249267578125	2	421.242535	840.470518	0.23487	9.8939E-05	-0.085289	-3.5928E-05	0.14959	6.3012E-05	421.2424105000288	63.631	0.96494	63.622	63.351	64.316	-0.0085564					60	34	3	0	0	0	0.021656	2	15757	15757;15804		99.799	10.895	1	874670			30223	1004;12585	17477	17478	37302;37303	37302					0.04390113351701075
NAPQPSHI	8	Unmodified	_NAPQPSHI_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-2|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.8855285644531	2	432.222134	862.429715	-0.050305	-2.1743E-05	0.72707	0.00031426	0.67677	0.00029251	432.2223278645065	20.392	0.61506	20.392	20.157	20.772	0					37	21	2	0	0	0	0.34167	1	2532	2532		11.64	0	1	214600			30224	2642	17478	17479	37304	37304					-0.007002279678999912
NAPRVLLTLL	10	Unmodified	_NAPRVLLTLL_					0	0	0		ENST00000314888.9_1_9:35697397-35697580:-|nuORF	ENST00000314888.9_1_9:35697397-35697580:-|nuORF	ENST00000314888.9_1_9:35697397-35697580:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3538818359375	2	555.355691	1108.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.21	1	112.22	111.72	112.72	0.0131								0	0	0	0.38166	1	29208	29208		0.40072	0	1				30225	9347	17479	17480	37305	37305					0.14682857190814502
NAPTRVRIKTV	11	Unmodified	_NAPTRVRIKTV_					0	0	0			REV__Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|85|2|sense	REV__Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|85|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.3807983398438	2	627.885678	1253.7568	-0.12157	-7.6335E-05	-3.9979	-0.0025103	-4.1195	-0.0025866	627.8846410914175	104.34	0.16663	104.34	104.23	104.39	0.0018463					42	22	3	0	0	0	0.33175	1	27689	27689		4.897	0	1	255490	+		30226	22702	17480	17481	37306	37306					0.14007547853998403
NAQEQQLYAMI	11	Unmodified	_NAQEQQLYAMI_					0	0	0			REV__nc|ENSG00000116833|O00482-4|NR5A2	REV__nc|ENSG00000116833|O00482-4|NR5A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.52850341796875	3	436.879939	1307.61799	0.040323	1.7616E-05	-0.17963	-7.8478E-05	-0.13931	-6.0862E-05	436.87978554789294	32.092	0.3156	32.133	32.007	32.323	0.040989					14	10	2	0	0	0	0.33287	1	6049	6049		2.8433	0	1	67256	+		30227	14944	17481	17482	37307	37307					-0.02351782896471377
NAQLKREPVK	10	Unmodified	_NAQLKREPVK_					0	0	0			REV__ENSG00000166197|ENST00000605788|NOLC1	REV__ENSG00000166197|ENST00000605788|NOLC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8297119140625	2	591.851304	1181.68806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.353	1	57.353	56.853	57.853	0								0	0	0	0.33945	1	13835	13835		19.257	0.88389	1		+		30228	17299	17482	17483	37308	37308					0.10447883554297732
NAQNITVIV	9	Unmodified	_NAQNITVIV_					0	0	0		ENST00000558439.5_1_15:51226794-51242057:+|nuORF;nc|ENSG00000081014|Q9UPM8-2|AP4E1;ENSG00000081014|ENST00000261842|AP4E1	ENST00000558439.5_1_15:51226794-51242057:+|nuORF	ENST00000558439.5_1_15:51226794-51242057:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2785339355469	2	486.279649	970.544745	-1.2141	-0.00059039	-1.208	-0.00058742	-2.4221	-0.0011778	486.27901276869096	34.863	0.60535	34.863	34.646	35.251	0					62	21	4	0	0	0	0.12642	1	6942	6942		34.402	1.616	1	1090200			30229	1173	17483	17484	37309	37309					0.0582945644322308
NARPTAPAV	9	Unmodified	_NARPTAPAV_					0	0	0			REV__ENSG00000196132|ENST00000328439|MYT1	REV__ENSG00000196132|ENST00000328439|MYT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.7509765625	2	448.751059	895.487565	0.33063	0.00014837	-1.1951	-0.00053632	-0.8645	-0.00038795	448.7508274395105	20.7	0.73774	20.7	20.371	21.108	0					90	25	6	0	0	0	0.25714	1	2599	2599		15.248	0	1	563540	+		30230	18622	17484	17485	37310	37310					0.03564033957513857
NARVLDWI	8	Unmodified	_NARVLDWI_					0	0	0		ENSG00000100889|ENST00000216780|PCK2;nc|ENSG00000100889|Q16822-3|PCK2	ENSG00000100889|ENST00000216780|PCK2	ENSG00000100889|ENST00000216780|PCK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.28045654296875	2	493.774534	985.534515	0.10626	5.2467E-05	-2.9765	-0.0014697	-2.8702	-0.0014172	493.77278187716365	14.566	0.60927	14.461	14.273	14.882	-0.10466					35	20	2	0	0	0	0.34167	1	872	872		11.64	2.2929	1	340660			30231	1641	17485	17486	37311	37311					0.041168935086489
NASHKLEVRLV	11	Unmodified	_NASHKLEVRLV_					0	0	0		nc|ENSG00000107669|O95260-2|ATE1	nc|ENSG00000107669|O95260-2|ATE1	nc|ENSG00000107669|O95260-2|ATE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3695678710938	2	633.369861	1264.72517	-0.057243	-3.6256E-05	-0.44058	-0.00027905	-0.49782	-0.00031531	633.3694829781047	99.148	1.0904	99.148	98.842	99.933	0					240	139	2	0	0	0	0.47649	1	26600	26600		1.1933	0	1	191160			30232	12641	17486	17487	37312	37312					0.1033955510006308
NATHIAQG	8	Unmodified	_NATHIAQG_					0	0	0		nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34	nc|ENSG00000115464|Q70CQ2-2|USP34	nc|ENSG00000115464|Q70CQ2-2|USP34	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.21917724609375	2	406.206484	810.398415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.733	1	25.694	25.194	26.194	-0.038671								0	0	0	0.36623	1	4144	4144		7.2892	0.56607	1				30233	2650	17487	17488	37313	37313					-0.014368010020007205
NATVLPPIGY	10	Unmodified	_NATVLPPIGY_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.246337890625	2	522.78985	1043.56515	0.45598	0.00023838	-0.42077	-0.00021997	0.035212	1.8409E-05	522.7893693988722	67.335	0.80646	67.335	67.135	67.942	0					50	27	3	0	0	0	0.27337	1	16895	16895		29.082	6.3453	1	272430			30234	2100	17488	17489	37314	37314					0.04510627103036313
NAVHSFIAEK	10	Unmodified	_NAVHSFIAEK_					0	0	0		ENSG00000104967|ENST00000263257|NOVA2	ENSG00000104967|ENST00000263257|NOVA2	ENSG00000104967|ENST00000263257|NOVA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2957763671875	2	558.29583	1114.57711	0.4832	0.00026977	-0.0029377	-1.6401E-06	0.48026	0.00026813	558.2956895570992	36.157	1.1844	36.239	35.651	36.836	0.082355					98	42	3	0	0	0	0.18562	1	7362	7362		34.402	0	1	1329300			30235	1939	17489	17490	37315	37315					0.02440243846217527
NAYEYFTKI	9	Unmodified	_NAYEYFTKI_					0	0	0		nc|ENSG00000030110|Q16611-2|BAK1;ENSG00000030110|ENST00000374467|BAK1	nc|ENSG00000030110|Q16611-2|BAK1	nc|ENSG00000030110|Q16611-2|BAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.7847900390625	2	574.784764	1147.55498	0.35016	0.00020127	0.10358	5.9537E-05	0.45374	0.0002608	574.7848451455565	57.286	1.5027	57.286	56.713	58.216	0					124	54	4	0	0	0	1.4498E-07	3	13820	13772;13820;13868		174.48	110.52	1	3630500			30236	550	17490	17491	37316;37317;37318	37317					-0.012899806222094412
NAYEYFTKI	9	Unmodified	_NAYEYFTKI_					0	0	0		nc|ENSG00000030110|Q16611-2|BAK1;ENSG00000030110|ENST00000374467|BAK1	nc|ENSG00000030110|Q16611-2|BAK1	nc|ENSG00000030110|Q16611-2|BAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.7847900390625	2	574.784764	1147.55498	0.35674	0.00020505	-0.034992	-2.0113E-05	0.32175	0.00018494	574.7845721137821	57.099	0.94828	57.178	56.857	57.805	0.078671					96	34	4	0	0	0	1.4498E-07	3	13769	13719;13769;13818		174.48	118.98	1	4213000			30237	550	17490	17491	37319;37320;37321	37320					-0.012899806222094412
NAYEYFTKI	9	Unmodified	_NAYEYFTKI_					0	0	0		nc|ENSG00000030110|Q16611-2|BAK1;ENSG00000030110|ENST00000374467|BAK1	nc|ENSG00000030110|Q16611-2|BAK1	nc|ENSG00000030110|Q16611-2|BAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.7847900390625	2	574.784764	1147.55498	0.1132	6.5067E-05	0.21448	0.00012328	0.32768	0.00018835	574.7848105143024	57.532	1.1583	57.515	57.117	58.275	-0.0172					113	42	4	0	0	0	1.4498E-07	3	13883	13839;13883;13935		174.48	118.98	1	4483000			30238	550	17490	17491	37322;37323;37324	37323					-0.012899806222094412
NAYKGRQFVKS	11	Unmodified	_NAYKGRQFVKS_					0	0	0			REV__ZNF208|p.W1096Cfs*4|1|0.15|ENSG00000160321|chr19:21971733-21971746|TAAGGTTTGAGGAC/-|frameshift_variant	REV__ZNF208|p.W1096Cfs*4|1|0.15|ENSG00000160321|chr19:21971733-21971746|TAAGGTTTGAGGAC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.8854675292969	3	433.238566	1296.69387	0.17667	7.6539E-05	1.9979	0.00086559	2.1746	0.00094212	433.2393898493314	20.402	0.68275	20.292	20.046	20.729	-0.11003					41	24	2	0	0	0	0.33236	1	2535	2535		4.4062	0.81909	1	245450	+		30239	16897	17491	17492	37325	37325					0.0573898206598642
NAYKTPLL	8	Unmodified	_NAYKTPLL_					0	0	0		ENSG00000150990|ENST00000308736|DHX37;ENST00000542400.5_1_12:125435197-125437195:-|nuORF	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.265869140625	2	460.26601	918.517468	-0.05359	-2.4665E-05	0.3048	0.00014029	0.25121	0.00011562	460.2660009209418	42.789	0.62164	42.789	42.465	43.087	0					53	22	3	0	0	0	0.11593	1	9337	9337		57.722	11.701	1	759150			30240	4930	17492	17493	37326	37326					0.054949729028635375
NAYKTPLL	8	Unmodified	_NAYKTPLL_					0	0	0		ENSG00000150990|ENST00000308736|DHX37;ENST00000542400.5_1_12:125435197-125437195:-|nuORF	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.265869140625	2	460.26601	918.517468	-0.053956	-2.4834E-05	0.19879	9.1494E-05	0.14483	6.666E-05	460.2659737965069	42.598	0.78439	42.683	42.378	43.163	0.085201					58	28	3	0	0	0	0.26189	1	9264	9264		49.554	18.918	1	864010			30241	4930	17492	17493	37327	37327					0.054949729028635375
NAYKTPLL	8	Unmodified	_NAYKTPLL_					0	0	0		ENSG00000150990|ENST00000308736|DHX37;ENST00000542400.5_1_12:125435197-125437195:-|nuORF	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.265869140625	2	460.26601	918.517468	0.082154	3.7813E-05	0.14585	6.7131E-05	0.22801	0.00010494	460.2659515722861	42.513	0.83506	42.605	42.26	43.095	0.091362					62	29	3	0	0	0	0.074763	1	9252	9252		66.457	28.305	1	853640			30242	4930	17492	17493	37328	37328					0.054949729028635375
NCAGPTNSLKY	11	Unmodified	_NCAGPTNSLKY_					0	0	0		ENST00000502571.1_1_5:147784249-147790417:+|nuORF;nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38	ENST00000502571.1_1_5:147784249-147790417:+|nuORF	ENST00000502571.1_1_5:147784249-147790417:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.7752075195312	2	584.27678	1166.53901	0.29094	0.00016999	-1.5683	-0.00091633	-1.2774	-0.00074635	584.7777383714135	51.296	1.0235	51.342	50.957	51.981	0.046577					76	37	3	0	0	0	0.21521	1	12087	12087		29.841	10.584	1	1677400			30243	4676	17493	17494	37329	37329					-0.037600101307589284
NCAYELLLK	9	Unmodified	_NCAYELLLK_					0	0	0		ENST00000468127.1_1_7:137684448-137686451:-|nuORF	ENST00000468127.1_1_7:137684448-137686451:-|nuORF	ENST00000468127.1_1_7:137684448-137686451:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.78564453125	2	533.78371	1065.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.367	1	48.415	47.915	48.915	0.047523								0	0	0	0.1351	1	11061	11061		38.176	3.2435	1				30244	10834	17494	17495	37330	37330					0.022712673683372486
NCHSCMRF	8	Unmodified	_NCHSCMRF_					0	0	0		ENST00000224140.5_1_9:135221842-135224754:-|nuORF	ENST00000224140.5_1_9:135221842-135224754:-|nuORF	ENST00000224140.5_1_9:135221842-135224754:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.19317626953125	2	499.193682	996.372811	0.29632	0.00014792	-1.4514	-0.00072453	-1.1551	-0.00057661	499.1928920195191	23.826	0.75955	23.753	23.474	24.234	-0.072559					31	25	2	0	0	0	0.45942	1	3573	3573		2.5775	0.27475	1	27946			30245	8840	17495	17496	37331	37331					-0.12552058111941733
NCRSLYPQL	9	Unmodified	_NCRSLYPQL_					0	0	0			REV__ENSG00000118231|ENST00000264376|CRYGD	REV__ENSG00000118231|ENST00000264376|CRYGD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7630615234375	2	547.276583	1092.53861	0.40319	0.00022066	-2.3868	-0.0013062	-1.9836	-0.0010856	547.2753222628938	42.586	0.43356	42.677	42.47	42.903	0.091362					25	15	2	0	0	0	0.2451	1	9217	9217		15.847	1.0089	1	119090	+		30246	15003	17496	17497	37332	37332					-0.003953850599373254
NCVQQFLE	8	Unmodified	_NCVQQFLE_					0	0	0			REV__nc|ENSG00000153303|Q8N878-2|FRMD1	REV__nc|ENSG00000153303|Q8N878-2|FRMD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.58001708984375	2	490.728935	979.443317	0.0061949	3.04E-06	-1.3188	-0.00064719	-1.3126	-0.00064415	490.7279305648311	13.663	0.36518	13.663	13.537	13.902	0					15	12	2	0	0	0	0.3366	1	479	479		18.135	1.1927	1	24599	+		30247	16624	17497	17498	37333	37333					-0.047227382509845484
NCYRGVLFF	9	Unmodified	_NCYRGVLFF_					0	0	0		ENST00000321250.12_1_8:29963998-29964085:+|nuORF	ENST00000321250.12_1_8:29963998-29964085:+|nuORF	ENST00000321250.12_1_8:29963998-29964085:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.7760009765625	2	559.776219	1117.53789	0.54853	0.00030705	-1.1179	-0.00062578	-0.56938	-0.00031873	559.7755348538986	21.278	0.56472	21.168	20.923	21.488	-0.11003					54	19	4	0	0	0	0.34536	1	2765	2765		2.0598	1.2661	1	398840			30248	9382	17498	17499	37334	37334					-0.01618179708975731
NCYRGVLFF	9	Unmodified	_NCYRGVLFF_					0	0	0		ENST00000321250.12_1_8:29963998-29964085:+|nuORF	ENST00000321250.12_1_8:29963998-29964085:+|nuORF	ENST00000321250.12_1_8:29963998-29964085:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.7761840820312	2	559.776219	1117.53789	0.35727	0.00019999	-0.83959	-0.00046998	-0.48232	-0.00026999	559.7756282001707	21.195	0.59592	21.142	20.861	21.457	-0.05291					53	20	3	0	0	0	0.34536	1	2745	2745		2.0598	0.21551	1	288130			30249	9382	17498	17499	37335	37335					-0.01618179708975731
NDDEQYAWE	9	Unmodified	_NDDEQYAWE_					0	0	0		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;HSP90AA1|p.K314Efs*5|1|0.28|ENSG00000080824|chr14:102084721-102084722|TT/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000505987.1_1_4:88813329-88813827:+|nuORF;HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;HSP90AB1|p.I483Hfs*7|1|0.32|ENSG00000096384|chr6:44251866-44251867|-/C|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P	nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8136596679688	2	585.222725	1168.4309	0.36355	0.00021276	-0.18664	-0.00010923	0.1769	0.00010353	585.2222040456377	96.9	0.1244	96.894	96.849	96.973	-0.0055466					14	10	2	0	0	0	0.26145	1	25929	25929		2.0598	0.40713	1	67146			30250	12596;1466;12874	17499	17500	37336	37336					-0.14658103180317994
NDDEQYAWE	9	Unmodified	_NDDEQYAWE_					0	0	0		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;HSP90AA1|p.K314Efs*5|1|0.28|ENSG00000080824|chr14:102084721-102084722|TT/-|frameshift_variant;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000505987.1_1_4:88813329-88813827:+|nuORF;HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;HSP90AB1|p.I483Hfs*7|1|0.32|ENSG00000096384|chr6:44251866-44251867|-/C|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P	nc|ENSG00000080824|P07900-2|HSP90AA1;HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;nc|ENSG00000183199|Q58FF7|HSP90AB3P	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	585.222725	1168.4309	0.026524	1.5522E-05	0.091822	5.3736E-05	0.11835	6.9259E-05	585.7254613155159	97.152	0.053467	97.152	97.128	97.182	0	0.12919	0.00031017	NaN	2.0598	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33261			30251	12596;1466;12874	17499	17500							-0.14658103180317994
NDGDVQGGFLE	11	Unmodified	_NDGDVQGGFLE_					0	0	0			REV__ENSG00000185085|ENST00000330574|INTS5	REV__ENSG00000185085|ENST00000330574|INTS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7537231445312	2	575.754192	1149.49383	0.27747	0.00015976	-1.3066	-0.0007523	-1.0292	-0.00059255	575.7534316075157	74.048	0.62861	74.101	73.86	74.488	0.052361					32	21	2	0	0	0	0.42346	1	18960	18960		8.1555	0.24537	1	701120	+		30252	18354	17500	17501	37337	37337					-0.07493537392247163
NDIHPTLRF	9	Unmodified	_NDIHPTLRF_					0	0	0			REV__ENST00000471736.5_1_4:158142110-158255356:+|nuORF	REV__ENST00000471736.5_1_4:158142110-158255356:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7738037109375	2	556.795998	1111.57744	0.10079	5.6122E-05	-2.5051	-0.0013948	-2.4043	-0.0013387	556.7950167509094	25.973	0.17254	25.934	25.813	25.985	-0.03867					7	5	2	0	0	0	0.24787	1	4203	4203		15.248	5.8654	1	122660	+		30253	21359	17501	17502	37338	37338					0.026116635660855536
NDKLVGVALR	10	Unmodified	_NDKLVGVALR_					0	0	0		ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7584838867188	2	542.827298	1083.64004	0.53448	0.00029013	0.39631	0.00021513	0.93079	0.00050526	542.8275107847627	30.434	0.77746	30.434	30.141	30.918	0					69	27	4	0	0	0	0.31911	1	5713	5713		3.8763	3.3516	1	825550			30254	8162	17502	17503	37339	37339					0.10156809634258934
NDKLVGVALR	10	Unmodified	_NDKLVGVALR_					0	0	0		ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	542.827298	1083.64004	0.61167	0.00033203	0.43989	0.00023879	1.0516	0.00057082	542.827482136122	30.386	0.70946	30.414	30.131	30.841	0.027946	-0.0047337	-4.5955E-05	NaN	3.8763	59	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	928790			30255	8162	17502	17503							0.10156809634258934
NDKLVGVALR	10	Unmodified	_NDKLVGVALR_					0	0	0		ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	ENSG00000198924|ENST00000361384|DCLRE1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	542.827298	1083.64004	0.29967	0.00016267	0.66957	0.00036346	0.96924	0.00052613	542.8276557211856	30.382	0.62417	30.409	30.16	30.784	0.027157	-0.010355	0.00020339	NaN	3.8763	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	974170			30256	8162	17502	17503							0.10156809634258934
NDLYMHDHQIW	11	Unmodified	_NDLYMHDHQIW_					0	0	0			REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.21881103515625	3	491.218954	1470.63503	0.078751	3.8684E-05	-0.52867	-0.00025969	-0.44991	-0.00022101	491.21884489193525	14.724	0.62729	14.619	14.308	14.935	-0.10466					78	21	5	0	0	0	0.43513	1	813	813		6.6235	0.3891	1	643150	+		30257	15928	17503	17504	37340	37340					-0.0814586229064389
NDLYMHDHQIW	11	Unmodified	_NDLYMHDHQIW_					0	0	0			REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	491.218954	1470.63503	0.038696	1.9008E-05	-0.61738	-0.00030327	-0.57869	-0.00028426	491.2188297644189	14.525	0.64575	14.525	14.279	14.925	0	-0.074956	-1.8279E-05	NaN	6.6235	77	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	627320	+		30258	15928	17503	17504							-0.0814586229064389
NDLYMHDHQIW	11	Unmodified	_NDLYMHDHQIW_					0	0	0			REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	491.218954	1470.63503	0.078751	3.8684E-05	-0.52867	-0.00025969	-0.44991	-0.00022101	491.21884489193525	14.724	0.62729	14.619	14.308	14.935	-0.10466	0.01855	0.00011246	NaN	6.6235	78	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	643150	+		30259	15928	17503	17504							-0.0814586229064389
NDLYMHDHQIW	11	Unmodified	_NDLYMHDHQIW_					0	0	0			REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	491.218954	1470.63503	0.016881	8.2922E-06	-0.66316	-0.00032576	-0.64628	-0.00031747	491.2188457832029	14.723	0.66291	14.657	14.349	15.012	-0.066067	0.056405	-8.5741E-05	NaN	6.6235	83	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	597050	+		30260	15928	17503	17504							-0.0814586229064389
NDNFHLNCLHF	11	Unmodified	_NDNFHLNCLHF_					0	0	0			REV__ENST00000249356.3_1_7:108210514-108212253:+|nuORF	REV__ENST00000249356.3_1_7:108210514-108212253:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.9417419433594	3	458.540028	1372.59825	0.17408	7.9825E-05	-0.043812	-2.009E-05	0.13027	5.9735E-05	458.53979937588883	38.27	0.79744	38.36	38.011	38.808	0.090881					86	28	4	0	0	0	0.33287	1	7873	7873		2.8433	0.21205	1	730450	+		30261	19514	17504	17505	37341	37341					-0.07314114116570636
NDNQDLLFLSL	11	Unmodified	_NDNQDLLFLSL_					0	0	0			REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8866271972656	3	431.22247	1290.64558	-0.35335	-0.00015237	-4.1897	-0.0018067	-4.543	-0.001959	431.2209200127659	15.295	1.2157	15.23	14.539	15.754	-0.064413					71	41	2	0	0	0	0.33296	1	1003	1003		2.6312	0.54523	1	577510	+		30262	18975	17505	17506	37342	37342					0.011884436354421268
NDPLELVTHF	10	Unmodified	_NDPLELVTHF_					0	0	0			REV__ENSG00000031081|ENST00000264245|ARHGAP31	REV__ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.2846069335938	2	592.800946	1183.58734	0.90034	0.00053372	2.4538	0.0014546	3.3541	0.0019883	593.3048950759494	60.73	0.18826	60.721	60.596	60.784	-0.0094566					9	6	2	0	0	0	0.31867	1	14861	14861		18.146	0	1	174140	+		30263	13494	17506	17507	37343	37343					0.002888067808271444
NDTFYFSIL	9	Unmodified	_NDTFYFSIL_					0	0	0		ENSG00000154252|ENST00000192314|GAL3ST2	ENSG00000154252|ENST00000192314|GAL3ST2	ENSG00000154252|ENST00000192314|GAL3ST2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.253662109375	2	560.27149	1118.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.488	1	82.488	81.988	82.988	0								0	0	0	0.2362	1	21537	21537		10.824	1.4765	1				30264	5114	17507	17508	37344	37344					-0.026096695135038317
NDTRITVKL	9	Unmodified	_NDTRITVKL_					0	0	0			REV__ENSG00000114446|ENST00000264538|IFT57	REV__ENSG00000114446|ENST00000264538|IFT57	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3248291015625	2	530.31148	1058.60841	0.33507	0.00017769	0.62242	0.00033008	0.95749	0.00050777	530.3117739165741	19.194	0.34858	19.138	18.961	19.309	-0.055693					15	11	2	0	0	0	0.33508	1	2188	2188		3.5965	0	1	33083	+		30265	14834	17508	17509	37345	37345					0.08144816880326289
NDVDFFQIE	9	Unmodified	_NDVDFFQIE_					0	0	0			REV__ENSG00000251258|ENST00000441065|RFPL4B	REV__ENSG00000251258|ENST00000441065|RFPL4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.2171630859375	2	563.756204	1125.49785	0.44479	0.00025075	-1.1851	-0.00066809	-0.74028	-0.00041734	564.2566541942299	83.27	1.8082	83.249	82.346	84.154	-0.020584					96	75	2	0	0	0	0.25346	1	21735	21735		7.1017	0	1	483540	+		30266	19220	17509	17510	37346	37346					-0.05987447898564824
NDYHEKCV	8	Unmodified	_NDYHEKCV_					0	0	0			REV__ENSG00000197748|ENST00000357060|CFAP43	REV__ENSG00000197748|ENST00000357060|CFAP43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7567138671875	2	504.216192	1006.41783	0.48523	0.00024466	0.73252	0.00036935	1.2177	0.00061401	504.2164366596816	65.785	0.77483	65.774	65.53	66.305	-0.011337					81	27	5	0	0	0	0.34117	1	16453	16453		13.906	1.3745	1	936740	+		30267	18763	17510	17511	37347	37347					-0.08512212773405281
NDYMMESHF	9	Unmodified	_NDYMMESHF_					0	0	0			REV__ENSG00000169814|ENST00000643237|BTD	REV__ENSG00000169814|ENST00000643237|BTD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.2218627929688	2	587.220617	1172.42668	0.46358	0.00027222	1.2641	0.00074231	1.7277	0.0010145	587.2215206731065	31.976	0.72936	31.976	31.8	32.529	0					73	25	4	0	0	0	0.31038	2	6030	6030;6075		7.2892	2.96	1	1533500	+		30268	17541	17511	17512	37348;37349	37348					-0.1526360719922195
NDYMMESHF	9	Unmodified	_NDYMMESHF_					0	0	0			REV__ENSG00000169814|ENST00000643237|BTD	REV__ENSG00000169814|ENST00000643237|BTD	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	587.220617	1172.42668	0.40519	0.00023794	1.4989	0.00088016	1.904	0.0011181	587.2215573747811	31.88	1.094	31.922	31.427	32.521	0.042366	-0.027018	5.4739E-05	NaN	7.2892	76	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1607200	+		30269	17541	17511	17512							-0.1526360719922195
NEAHDEDGF	9	Unmodified	_NEAHDEDGF_					0	0	0			REV__ENST00000442865.1_1_7:29638488-29724509:-|nuORF	REV__ENST00000442865.1_1_7:29638488-29724509:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.23681640625	2	517.19651	1032.37847	0.47703	0.00024672	1.4393	0.00074441	1.9163	0.00099113	517.1972020025908	54.405	0.62041	54.389	54.113	54.734	-0.015923					28	21	2	0	0	0	0.25526	1	12866	12866		1.8442	0	1	213630	+		30270	21057	17512	17513	37350	37350					-0.13642641523279053
NEASSGKYTQH	11	Unmodified	_NEASSGKYTQH_					0	0	0		nc|ENSG00000215568|Q2WGN9|GAB4	nc|ENSG00000215568|Q2WGN9|GAB4	nc|ENSG00000215568|Q2WGN9|GAB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.279052734375	2	611.278366	1220.54218	-0.0063598	-3.8876E-06	0.50845	0.0003108	0.50209	0.00030691	611.2788610935163	27.844	0.74771	27.844	27.53	28.277	0					77	25	4	0	0	0	0.46655	1	4847	4847		2.4985	0.65425	1	873480			30271	12945	17513	17514	37351	37351					-0.059270437523764485
NEAVRDLLAP	10	Unmodified	_NEAVRDLLAP_					0	0	0		ENST00000531423.1_1_8:145696018-145698106:+|nuORF;ENSG00000167702|ENST00000645548|KIFC2;nc|ENSG00000167702|Q96AC6|KIFC2	ENST00000531423.1_1_8:145696018-145698106:+|nuORF	ENST00000531423.1_1_8:145696018-145698106:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7478637695312	2	549.301113	1096.58767	0.57983	0.0003185	3.4588	0.0018999	4.0386	0.0022184	549.8043537075424	36.852	0.22108	36.939	36.841	37.062	0.08741					10	7	2	0	0	0	0.31039	1	7554	7554		18.146	5.9057	1	65315			30272	6201	17514	17515	37352	37352					0.04324226500648365
NECLAGLYGAL	11	Unmodified	_NECLAGLYGAL_					0	0	0			REV__ENST00000571707.1_1_17:79609405-79612656:+|nuORF	REV__ENST00000571707.1_1_17:79609405-79612656:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.2776489257812	2	562.276249	1122.53795	0.17332	9.7456E-05	3.7804	0.0021256	3.9537	0.0022231	562.278534247602	18.706	0.47406	18.588	18.387	18.862	-0.11739					23	16	2	0	0	0	0.44828	1	2022	2022		4.897	2.1618	1	34028	+		30273	18205	17515	17516	37353	37353					-0.018422244996600057
NEDKLEKQ	8	Unmodified	_NEDKLEKQ_					0	0	0		ENSG00000234284|ENST00000444149|ZNF879	ENSG00000234284|ENST00000444149|ZNF879	ENSG00000234284|ENST00000444149|ZNF879	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2745361328125	2	502.256371	1002.49819	0.44957	0.0002258	-0.39796	-0.00019988	0.051604	2.5918E-05	502.2563225989537	21.119	0.92278	21.119	20.678	21.601	0					59	31	3	0	0	0	0.39068	1	2687	2687		20.454	0	1	129650			30274	8484	17516	17517	37354	37354					-0.0029602817870681974
NEEEEERRYY	10	Unmodified	_NEEEEERRYY_					0	0	0		ENST00000530138.3_1_11:67766987-67771573:-|nuORF;ENSG00000110057|ENST00000227471|UNC93B1;ENST00000533424.5_1_11:67770773-67771486:-|nuORF	ENST00000530138.3_1_11:67766987-67771573:-|nuORF	ENST00000530138.3_1_11:67766987-67771573:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.8872985839844	3	472.872389	1415.59534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.931	1	13.931	13.431	14.431	0								0	0	0	0.38104	1	572	572		1.7423	0.63252	1				30275	2292	17517	17518	37355	37355					-0.09583710760352915
NEEEETSDSSL	11	Unmodified	_NEEEETSDSSL_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.L2113Dfs*17|1|0.07|ENSG00000197321|chr10:29462341-29462342|AG/-|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.76080322265625	3	413.833488	1238.47864	0.25036	0.00010361	-0.85804	-0.00035509	-0.60768	-0.00025148	413.8330549152024	37.441	0.53864	37.534	37.302	37.84	0.093014					49	19	3	0	0	0	0.33296	1	7713	7713		0.40827	0	1	471810			30276	7952	17518	17519	37356	37356					-0.13106493770760608
NEEGCTPLHL	10	Unmodified	_NEEGCTPLHL_					0	0	0		nc|ENSG00000184381|O60733-4|PLA2G6;nc|ENSG00000184381|O60733-3|PLA2G6;nc|ENSG00000184381|O60733-2|PLA2G6;ENSG00000184381|ENST00000332509|PLA2G6	nc|ENSG00000184381|O60733-4|PLA2G6	nc|ENSG00000184381|O60733-4|PLA2G6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3450927734375	2	556.755681	1111.49681	-0.030586	-1.7029E-05	-2.7013	-0.001504	-2.7319	-0.001521	556.7541296518384	13.041	0.27494	13.041	12.925	13.2	0					14	9	2	0	0	0	0.32123	1	295	295		1.6526	0.32309	1	36139			30277	7450	17519	17520	37357	37357					-0.05447985539126421
NEEGCTPLHL	10	Unmodified	_NEEGCTPLHL_					0	0	0		nc|ENSG00000184381|O60733-4|PLA2G6;nc|ENSG00000184381|O60733-3|PLA2G6;nc|ENSG00000184381|O60733-2|PLA2G6;ENSG00000184381|ENST00000332509|PLA2G6	nc|ENSG00000184381|O60733-4|PLA2G6	nc|ENSG00000184381|O60733-4|PLA2G6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3450317382812	2	556.755681	1111.49681	-0.1563	-8.702E-05	-2.0424	-0.0011371	-2.1987	-0.0012241	556.7543533904884	13.077	0.31088	13.01	12.905	13.215	-0.067496					16	10	2	0	0	0	0.32123	1	312	312		1.6526	0.17072	1	36358			30278	7450	17519	17520	37358	37358					-0.05447985539126421
NEEHRVTI	8	Unmodified	_NEEHRVTI_					0	0	0		ENSG00000101004|ENST00000278886|NINL;nc|ENSG00000101004|Q9Y2I6-2|NINL	ENSG00000101004|ENST00000278886|NINL	ENSG00000101004|ENST00000278886|NINL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7908630371094	2	499.256705	996.498858	0.39376	0.00019658	-4.2388	-0.0021162	-3.845	-0.0019197	499.25331691692486	82.009	0.38	81.985	81.813	82.193	-0.02404					18	14	2	0	0	0	0.32886	1	21431	21431		21.747	5.8995	1	163750			30279	1658	17520	17521	37359	37359					0.0004681126099512767
NEEKNRLP	8	Unmodified	_NEEKNRLP_					0	0	0		nc|ENSG00000123178|Q5W111-2|SPRYD7;ENSG00000123178|ENST00000361840|SPRYD7	nc|ENSG00000123178|Q5W111-2|SPRYD7	nc|ENSG00000123178|Q5W111-2|SPRYD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.31329345703125	2	500.26453	998.514508	0.30479	0.00015248	-0.2521	-0.00012612	0.052693	2.6361E-05	500.2642392124294	24.375	0.65598	24.375	24.134	24.79	0					49	21	3	0	0	0	0.34198	1	3785	3785		10.824	10.824	1	103650			30280	3091	17521	17522	37360	37360					0.015190977780321191
NEELPRLL	8	Unmodified	_NEELPRLL_					0	0	0		nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;ENSG00000040199|ENST00000568954|PHLPP2	nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.263671875	2	492.279649	982.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.955	1	58.94	58.44	59.44	-0.014267								0	0	0	0.34229	1	14319	14319		18.135	0	1				30281	12569	17522	17523	37361	37361					0.05277456443241135
NEEPVVENK	9	Unmodified	_NEEPVVENK_					0	0	0			REV__nc|ENSG00000184014|Q6IQ26-2|DENND5A	REV__nc|ENSG00000184014|Q6IQ26-2|DENND5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2508544921875	2	529.261653	1056.50875	-0.66295	-0.00035087	-0.32346	-0.00017119	-0.9864	-0.00052207	529.2612559769101	35.015	0.41418	35.09	34.874	35.288	0.075306					31	14	3	0	0	0	0.19747	1	6983	6983		24.021	0	1	227670	+		30282	18299	17523	17524	37362	37362					-0.017240455242927055
NEESRARY	8	Unmodified	_NEESRARY_					0	0	0		nc|ENSG00000108176|Q9UKB3-2|DNAJC12;DNAJC12|p.M112Nfs*7|1|0.05|ENSG00000108176|chr10:67805750-67805751|-/AAAT|frameshift_variant;ENSG00000108176|ENST00000225171|DNAJC12	nc|ENSG00000108176|Q9UKB3-2|DNAJC12	nc|ENSG00000108176|Q9UKB3-2|DNAJC12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9854736328125	2	512.743962	1023.47337	0.16711	8.5683E-05	-0.088117	-4.5182E-05	0.07899	4.0502E-05	512.7439770385874	94.926	1.4963	95.008	94.199	95.695	0.082779					177	131	2	0	0	0	0.344	1	25522	25522		2.5775	0	1	195060			30283	270	17524	17525	37363	37363					-0.03742663261436974
NEFPVFITM	9	Unmodified	_NEFPVFITM_					0	0	0		ENSG00000018236|ENST00000551295|CNTN1;nc|ENSG00000018236|Q12860-2|CNTN1;nc|ENSG00000018236|Q12860-3|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.285400390625	2	549.270435	1096.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.54	1	66.54	66.04	67.04	0								0	0	0	0.17683	1	16660	16660		28.487	4.6971	1				30284	492	17525	17526	37364	37364					-0.01808421522991921
NEGSLKFVPI	10	Unmodified	_NEGSLKFVPI_					0	0	0			REV__ENST00000490251.1_1_7:43679183-43685017:-|nuORF	REV__ENST00000490251.1_1_7:43679183-43685017:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.78369140625	2	552.308406	1102.60226	0.4033	0.00022275	-1.0477	-0.00057863	-0.64436	-0.00035588	552.307437319696	58.827	0.66458	58.827	58.468	59.133	0					49	22	3	0	0	0	0.28569	1	14257	14257		20.415	1.1575	1	378840	+		30285	14527	17526	17527	37365	37365					0.055062986488110255
NEGSLKFVPI	10	Unmodified	_NEGSLKFVPI_					0	0	0			REV__ENST00000490251.1_1_7:43679183-43685017:-|nuORF	REV__ENST00000490251.1_1_7:43679183-43685017:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7836303710938	2	552.308406	1102.60226	0.45348	0.00025046	-0.5727	-0.00031631	-0.11922	-6.5845E-05	552.3077108115452	58.725	0.76557	58.817	58.418	59.183	0.091301					51	26	3	0	0	0	0.28569	1	14208	14208		20.415	0	1	473530	+		30286	14527	17526	17527	37366	37366					0.055062986488110255
NEHYDPPF	8	Unmodified	_NEHYDPPF_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71;nc|ENSG00000177354|Q711Q0-3|CEFIP	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7716064453125	2	509.716882	1017.41921	0.94123	0.00047976	-1.1734	-0.0005981	-0.23216	-0.00011833	509.7159685487762	56.416	0.40578	56.397	56.267	56.672	-0.019081					17	14	2	0	0	0	0.34218	1	13496	13496		5.2307	0	1	455180			30287	6980	17527	17528	37367	37367					-0.08880255412998395
NEILNRLIL	9	Unmodified	_NEILNRLIL_					0	0	0			REV__nc|ENSG00000211697|A0A0B4J1U4|TRGV5	REV__nc|ENSG00000211697|A0A0B4J1U4|TRGV5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7489624023438	2	549.337498	1096.66044	0.52782	0.00028995	0.83486	0.00045862	1.3627	0.00074857	549.3389001980157	36.667	0.42797	36.667	36.416	36.844	0					23	14	2	0	0	0	0.25938	1	7515	7515		4.3292	0	1	211870	+		30288	23179	17528	17529	37368	37368					0.11597980294095578
NEILNRLIL	9	Unmodified	_NEILNRLIL_					0	0	0			REV__nc|ENSG00000211697|A0A0B4J1U4|TRGV5	REV__nc|ENSG00000211697|A0A0B4J1U4|TRGV5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7489013671875	2	549.337498	1096.66044	0.91225	0.00050113	-0.12899	-7.0861E-05	0.78326	0.00043027	549.3384170952608	36.521	0.52097	36.607	36.371	36.892	0.08625					25	18	2	0	0	0	0.25526	1	7457	7457		4.3292	0	1	170860	+		30289	23179	17528	17529	37369	37369					0.11597980294095578
NEKAIHKEG	9	Unmodified	_NEKAIHKEG_					0	0	0		nc|ENSG00000135404|P08962-3|CD63;nc|ENSG00000135404|P08962-2|CD63;ENSG00000135404|ENST00000257857|CD63	nc|ENSG00000135404|P08962-3|CD63	nc|ENSG00000135404|P08962-3|CD63	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.290283203125	2	513.272355	1024.53016	0.3597	0.00018463	0.70802	0.00036341	1.0677	0.00054803	513.2730013029877	21.671	0.37803	21.571	21.338	21.716	-0.10034					18	13	2	0	0	0	0.23007	1	2865	2865		19.257	0	1	76081			30290	3871	17529	17530	37370	37370					0.018873842950824837
NEKAIHKEG	9	Unmodified	_NEKAIHKEG_					0	0	0		nc|ENSG00000135404|P08962-3|CD63;nc|ENSG00000135404|P08962-2|CD63;ENSG00000135404|ENST00000257857|CD63	nc|ENSG00000135404|P08962-3|CD63	nc|ENSG00000135404|P08962-3|CD63	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.272355	1024.53016	0.33863	0.00017381	0.69743	0.00035797	1.0361	0.00053178	513.272984655331	21.557	0.55421	21.557	21.368	21.922	0	0.0057964	-6.7249E-05	NaN	19.257	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57706			30291	3871	17529	17530							0.018873842950824837
NEKASSELFA	10	Unmodified	_NEKASSELFA_					0	0	0			REV__ENST00000470072.1_1_7:151167581-151168580:-|nuORF	REV__ENST00000470072.1_1_7:151167581-151168580:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2606811523438	2	548.269478	1094.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.536	1	81.536	81.036	82.036	0								0	0	0	0.36581	1	21244	21244		8.1555	0	1		+		30292	14528	17530	17531	37371	37371					-0.019077590072356543
NEKKNFLIK	9	Unmodified	_NEKKNFLIK_					0	0	0			REV__ENST00000586944.5_1_19:807712-810823:+|nuORF	REV__ENST00000586944.5_1_19:807712-810823:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3374633789062	2	567.337498	1132.66044	0.46026	0.00026112	-0.37111	-0.00021054	0.089149	5.0578E-05	567.3372694924135	40.551	0.56874	40.551	40.334	40.902	0					43	20	3	0	0	0	0.18208	1	8687	8687		26.268	1.2772	1	512340	+		30293	13428	17531	17532	37372	37372					0.09941980294070163
NEKVSFIKDSL	11	Unmodified	_NEKVSFIKDSL_					0	0	0		nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.845947265625	3	427.234599	1278.68197	-0.011858	-5.0663E-06	2.5179	0.0010757	2.5061	0.0010707	427.23515945627923	40.564	0.81245	40.663	40.368	41.18	0.099403					68	29	4	0	0	0	0.33025	1	8773	8773		6.2344	1.5184	1	608920			30294	2859	17532	17533	37373	37373					0.053773205321704154
NELCRYRQF	9	Unmodified	_NELCRYRQF_					0	0	0			REV__ENSG00000091136|ENST00000222399|LAMB1	REV__ENSG00000091136|ENST00000222399|LAMB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.90594482421875	3	410.201235	1227.58188	-0.2173	-8.9136E-05	-2.5197	-0.0010336	-2.737	-0.0011227	410.20004477350835	31.279	0.66571	31.279	30.81	31.476	0					31	23	2	0	0	0	0.2524	1	5870	5870		11.495	3.3392	1	69218	+		30295	14059	17533	17534	37374	37374					-0.022811952826714332
NELFRLAF	8	Unmodified	_NELFRLAF_					0	0	0			REV__ENSG00000102098|ENST00000251900|SCML2	REV__ENSG00000102098|ENST00000251900|SCML2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7650146484375	2	505.276909	1008.53927	0.58696	0.00029658	-0.0090324	-4.5639E-06	0.57793	0.00029201	505.2768348390495	54.917	0.90315	54.917	54.496	55.4	0					78	33	3	0	0	0	0.32886	1	13066	13066		21.747	0	1	697900	+		30296	14304	17534	17535	37375	37375					0.03533777651421133
NELIYKHGY	9	Unmodified	_NELIYKHGY_					0	0	0		ENST00000478965.1_1_5:94161779-94162088:-|nuORF	ENST00000478965.1_1_5:94161779-94162088:-|nuORF	ENST00000478965.1_1_5:94161779-94162088:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.303466796875	2	568.790381	1135.56621	0.38861	0.00022104	2.4069	0.001369	2.7955	0.0015901	568.7922621114307	59.61	0.65097	59.598	59.199	59.85	-0.011486					52	22	3	0	0	0	0.10058	1	14483	14483		53.833	15.859	1	510730			30297	10984	17535	17536	37376	37376					0.0038484147196413687
NELLIASFS	9	Unmodified	_NELLIASFS_					0	0	0		ENSG00000143171|ENST00000359842|RXRG;nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB;chr9:134422808-134429108|116|11.77|0.09|6.99|+|2|None,RXRA|1	ENSG00000143171|ENST00000359842|RXRG	ENSG00000143171|ENST00000359842|RXRG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7799377441406	2	497.266207	992.517862	0.41483	0.00020628	0.51996	0.00025856	0.93479	0.00046484	497.2670148768467	23.854	0.83178	23.815	23.534	24.366	-0.038927					52	28	3	0	0	0	0.24848	1	3548	3548		13.906	2.2658	1	42896			30298	4485	17536	17537	37377	37377					0.02130347832053303
NELMLKGLPA	10	Unmodified	_NELMLKGLPA_					0	0	0			REV__nc|ENSG00000103168|Q15572-2|TAF1C	REV__nc|ENSG00000103168|Q15572-2|TAF1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.317138671875	2	543.30481	1084.59507	1.152	0.00062589	1.0752	0.00058416	2.2272	0.0012101	543.3050832916939	33.874	0.46822	33.94	33.624	34.092	0.06636					28	16	2	0	0	0	0.34325	1	6581	6581		13.906	0.29118	1	232390	+		30299	14357	17537	17538	37378	37378					0.056152427767528934
NELMLKGLPA	10	Unmodified	_NELMLKGLPA_					0	0	0			REV__nc|ENSG00000103168|Q15572-2|TAF1C	REV__nc|ENSG00000103168|Q15572-2|TAF1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3162231445312	2	543.30481	1084.59507	0.4437	0.00024106	1.3843	0.00075208	1.828	0.00099314	543.3054273445589	33.788	0.49251	33.855	33.607	34.099	0.066704					23	17	2	0	0	0	0.36002	1	6533	6533		10.824	10.824	1	198830	+		30300	14357	17537	17538	37379	37379					0.056152427767528934
NELMVDFYLH	10	Unmodified	_NELMVDFYLH_					0	0	0			REV__nc|ENSG00000121417|Q13398-6|ZNF211	REV__nc|ENSG00000121417|Q13398-6|ZNF211	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.8052978515625	2	640.802631	1279.59071	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.738	1	31.779	31.279	32.279	0.040991								0	0	0	0.37581	1	5962	5962		3.9444	0.3479	1		+		30301	15120	17538	17539	37380	37380					-0.037902664368175465
NELNKPPK	8	Unmodified	_NELNKPPK_					0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.29571533203125	2	470.266542	938.51853	-0.14024	-6.5952E-05	-1.4794	-0.00069572	-1.6197	-0.00076167	470.26639169394423	13.882	0.31578	13.816	13.661	13.977	-0.066068					15	10	2	0	0	0	0.344	1	525	525		2.5775	0	1	42747	+		30302	16568	17539	17540	37381	37381					0.0468118727176261
NELNKPPK	8	Unmodified	_NELNKPPK_					0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	470.266542	938.51853	-0.26075	-0.00012262	-0.90316	-0.00042473	-1.1639	-0.00054735	470.2663012321632	13.857	0.33204	13.857	13.66	13.992	0	0.022586	-0.0002776	NaN	2.5775	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47751	+		30303	16568	17539	17540							0.0468118727176261
NELNKPPK	8	Unmodified	_NELNKPPK_					0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	470.266542	938.51853	-0.24144	-0.00011354	-0.13599	-6.3952E-05	-0.37743	-0.00017749	470.2663077007195	13.936	0.27835	13.831	13.713	13.991	-0.10466	-0.003613	0.00044395	NaN	2.5775	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50353	+		30304	16568	17539	17540							0.0468118727176261
NELRRLIR	8	Unmodified	_NELRRLIR_					0	0	0			REV__ENST00000536538.1_1_12:6602900-6604254:+|nuORF	REV__ENST00000536538.1_1_12:6602900-6604254:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.8484497070312	2	535.333082	1068.65161	0.31989	0.00017125	2.2509	0.001205	2.5708	0.0013762	535.3346954994315	19.227	0.34861	19.171	18.989	19.337	-0.055693					23	11	3	0	0	0	0.34353	1	2199	2199		4.756	0	1	41059	+		30305	19931	17540	17541	37382	37382					0.12003051448255064
NELSKKMRC	9	Unmodified	_NELSKKMRC_					0	0	0			REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF	REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.78515625	2	554.783718	1107.55288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.99	1	18.873	18.373	19.373	-0.11739								0	0	0	0.2646	1	2101	2101		1.6526	0.45928	1		+		30306	19540	17541	17542	37383	37383					0.0034094409670615278
NELVLLRILAA	11	Unmodified	_NELVLLRILAA_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.8866577148438	2	612.887355	1223.76016	0.35917	0.00022013	-0.56928	-0.0003489	-0.21011	-0.00012877	612.8868731265349	72.434	0.61665	72.434	72.158	72.775	0					46	22	3	0	0	0	0.44828	1	18480	18480		4.897	0	1	357040	+		30307	16188	17542	17543	37384	37384					0.15722797908074426
NELYWKFPK	9	Unmodified	_NELYWKFPK_					0	0	0			REV__ENSG00000143641|ENST00000366672|GALNT2	REV__ENSG00000143641|ENST00000366672|GALNT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.8679504394531	3	408.885241	1223.63389	0.59224	0.00024216	-0.65442	-0.00026758	-0.06218	-2.5425E-05	408.88486042701476	50.312	1.3194	50.357	50.108	51.427	0.044891					65	48	2	0	0	0	0.25622	1	11976	11976		0.86438	0.4977	1	604180	+		30308	16192	17543	17544	37385	37385					0.03102291402751689
NELYWKFPK	9	Unmodified	_NELYWKFPK_					0	0	0			REV__ENSG00000143641|ENST00000366672|GALNT2	REV__ENSG00000143641|ENST00000366672|GALNT2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	408.885241	1223.63389	0.64968	0.00026564	-0.79298	-0.00032424	-0.1433	-5.8595E-05	408.88483634957163	50.422	1.2358	50.442	50.177	51.413	0.020691	0.053252	-0.00019205	NaN	0.86438	81	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383120	+		30309	16192	17543	17544							0.03102291402751689
NENIYTML	8	Unmodified	_NENIYTML_					0	0	0			REV__nc|ENSG00000143033|Q9Y483-3|MTF2	REV__nc|ENSG00000143033|Q9Y483-3|MTF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.78125	2	499.236593	996.458632	0.24647	0.00012305	0.28801	0.00014378	0.53447	0.00026683	499.23701037824713	26.344	0.4252	26.344	26.133	26.558	0					28	14	3	0	0	0	0.34218	1	4350	4350		9.3474	0	1	79991	+		30310	16144	17544	17545	37386	37386					-0.0397387145378616
NENKNLEH	8	Unmodified	_NENKNLEH_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7812805175781	2	499.238513	996.462472	0.42413	0.00021174	-2.9593	-0.0014774	-2.5352	-0.0012657	499.23700542780006	26.385	0.48197	26.362	26.158	26.64	-0.022236					30	16	3	0	0	0	0.3366	1	4384	4384		18.135	8.7875	1	102470			30311	6632	17545	17546	37387	37387					-0.0359006563571711
NENLLLRQ	8	Unmodified	_NENLLLRQ_					0	0	0		ENST00000571006.5_1_16:46521999-46540142:-|nuORF;ENST00000566201.6_1_16:46508202-46534771:-|nuORF	ENST00000571006.5_1_16:46521999-46540142:-|nuORF	ENST00000571006.5_1_16:46521999-46540142:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.73712158203125	2	500.282723	998.550893	0.26924	0.0001347	3.6524	0.0018272	3.9216	0.0019619	500.78752567796573	16.64	0.16739	16.64	16.521	16.689	0					6	5	2	0	0	0	0.34408	1	1367	1367		2.3027	0	1	13995			30312	11977	17546	17547	37388	37388					0.05155974674767094
NEPKRRLVR	9	Unmodified	_NEPKRRLVR_					0	0	0		ENST00000334268.8_1_6:123658775-123687324:-|nuORF	ENST00000334268.8_1_6:123658775-123687324:-|nuORF	ENST00000334268.8_1_6:123658775-123687324:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.357177734375	2	584.357088	1166.69962	0.54901	0.00032082	-0.63088	-0.00036866	-0.081868	-4.784E-05	584.356552371031	84.781	0.58887	84.781	84.405	84.994	0					73	21	4	0	0	0	0.33508	1	22149	22149		3.5965	0.60125	1	1255600			30313	9464	17547	17548	37389	37389					0.122941253683166
NEQHWDML	8	Unmodified	_NEQHWDML_					0	0	0			REV__nc|ENSG00000090612|Q14587-3|ZNF268	REV__nc|ENSG00000090612|Q14587-3|ZNF268	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.7296142578125	2	536.729466	1071.44438	0.4101	0.00022011	-0.97424	-0.00052291	-0.56415	-0.00030279	536.7293524321088	58.83	1.4579	58.922	58.446	59.904	0.091305					165	51	5	0	0	0	0.3671	1	14341	14341		23.148	6.2061	1	7150000	+		30314	14046	17548	17549	37390	37390					-0.08848523882079462
NEQKVPQLDWL	11	Unmodified	_NEQKVPQLDWL_					0	0	0			REV__ENST00000540817.1_1_2:44571042-44588692:-|nuORF	REV__ENST00000540817.1_1_2:44571042-44588692:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7665710449219	3	457.241865	1368.70376	0.10427	4.7677E-05	1.9546	0.00089374	2.0589	0.00094142	457.2428430329954	16.478	0.3525	16.415	16.205	16.558	-0.062534					18	11	2	0	0	0	0.3325	1	1276	1276		4.1166	1.4854	1	36614	+		30315	22119	17549	17550	37391	37391					0.03416125280705273
NEQNLTKLRV	10	Unmodified	_NEQNLTKLRV_					0	0	0		ENST00000261349.8_1_12:12397271-12397439:-|nuORF	ENST00000261349.8_1_12:12397271-12397439:-|nuORF	ENST00000261349.8_1_12:12397271-12397439:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.517578125	3	405.566571	1213.67788	-0.31032	-0.00012586	-3.2177	-0.001305	-3.528	-0.0014308	405.89978019349337	15.54	0.74168	15.43	14.955	15.696	-0.10982					37	25	2	0	0	0	0.32165	1	936	936		0.69767	0	1	34281			30316	8963	17550	17551	37392	37392					0.07959275829057333
NEQNLTKLRV	10	Unmodified	_NEQNLTKLRV_					0	0	0		ENST00000261349.8_1_12:12397271-12397439:-|nuORF	ENST00000261349.8_1_12:12397271-12397439:-|nuORF	ENST00000261349.8_1_12:12397271-12397439:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	405.566571	1213.67788	-0.34871	-0.00014143	-2.0136	-0.00081663	-2.3623	-0.00095806	405.8997232633311	15.384	0.68977	15.384	15.044	15.734	0	-0.019415	0.00046956	NaN	0.69767	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28301			30317	8963	17550	17551							0.07959275829057333
NEQNLTKLRV	10	Unmodified	_NEQNLTKLRV_					0	0	0		ENST00000261349.8_1_12:12397271-12397439:-|nuORF	ENST00000261349.8_1_12:12397271-12397439:-|nuORF	ENST00000261349.8_1_12:12397271-12397439:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.566571	1213.67788	-0.32889	-0.00013339	-1.2002	-0.00048676	-1.5291	-0.00062014	405.56700815965246	15.46	0.71335	15.396	15.041	15.754	-0.064414	-0.0073724	0.0014592	NaN	0.69767	30	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38757			30318	8963	17550	17551							0.07959275829057333
NERLPRAGE	9	Unmodified	_NERLPRAGE_					0	0	0			REV__nc|ENSG00000132561|O00339-3|MATN2	REV__nc|ENSG00000132561|O00339-3|MATN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.8155517578125	2	521.275429	1040.53631	0.047187	2.4598E-05	-2.6362	-0.0013742	-2.589	-0.0013496	521.2740917677966	13.22	0.32298	13.121	12.894	13.217	-0.099291					15	10	2	0	0	0	0.25843	1	373	373		5.7319	0	1	35018	+		30319	15581	17551	17552	37393	37393					0.0176590252663118
NERRLAYQKRK	11	Unmodified	_NERRLAYQKRK_					0	0	0		ENSG00000164949|ENST00000297596|GEM	ENSG00000164949|ENST00000297596|GEM	ENSG00000164949|ENST00000297596|GEM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2740478515625	3	487.951419	1460.83243	0.25365	0.00012377	1.2296	0.00059998	1.4832	0.00072375	487.95228851035415	16.46	0.60752	16.397	16.066	16.674	-0.062534					38	20	3	0	0	0	0.46554	1	1346	1346		2.6312	1.3016	1	85769			30320	5906	17552	17553	37394	37394					0.12044525034275466
NESARIEGPF	10	Unmodified	_NESARIEGPF_					0	0	0			REV__ENST00000547085.1_1_12:112600816-112607652:-|nuORF	REV__ENST00000547085.1_1_12:112600816-112607652:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.816162109375	2	560.275095	1118.53564	0.39377	0.00022062	1.0998	0.00061618	1.4936	0.0008368	560.2758762272927	57.403	0.65287	57.403	57.012	57.665	0					38	23	2	0	0	0	0.31358	1	13886	13886		9.3831	9.3831	1	439520	+		30321	22176	17553	17554	37395	37395					-0.018889369131102285
NESKLSPLN	9	Unmodified	_NESKLSPLN_					0	0	0			REV__nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	REV__nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2583923339844	2	501.266739	1000.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.369	1	80.343	79.843	80.843	-0.026825								0	0	0	0.21009	1	20869	20869		19.257	1.122	1		+		30322	23245	17554	17555	37396	37396					0.018685622009684266
NESRLSITDS	10	Unmodified	_NESRLSITDS_					0	0	0		nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3	nc|ENSG00000070882|Q9H4L5-8|OSBPL3	nc|ENSG00000070882|Q9H4L5-8|OSBPL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.784423828125	2	561.275292	1120.53603	0.44159	0.00024786	-4.3029	-0.0024151	-3.8613	-0.0021672	561.2742204955573	49.767	0.74992	49.811	49.593	50.343	0.044891					50	28	3	0	0	0	0.33594	1	11562	11562		15.248	2.7169	1	413940			30323	944	17555	17556	37397	37397					-0.01941561983903739
NESSFTSLSQ	10	Unmodified	_NESSFTSLSQ_					0	0	0			REV__ENST00000547020.1_1_12:53875694-53876159:-|nuORF	REV__ENST00000547020.1_1_12:53875694-53876159:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.264404296875	2	550.248743	1098.48293	0.42855	0.00023581	0.84846	0.00046686	1.277	0.00070267	550.2491717739446	38.019	0.97694	38.019	37.646	38.623	0					78	34	3	0	0	0	0.30958	1	7972	7972		19.257	0	1	723420	+		30324	15996	17556	17557	37398	37398					-0.062369397665634096
NESSKDIITKL	11	Unmodified	_NESSKDIITKL_					0	0	0			REV__nc|ENSG00000105953|Q02218-2|OGDH	REV__nc|ENSG00000105953|Q02218-2|OGDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.3460083007812	2	624.345717	1246.67688	-0.022603	-1.4112E-05	0.66394	0.00041453	0.64133	0.00040041	624.346172097639	39.261	0.73684	39.261	38.958	39.695	0					55	26	3	0	0	0	0.15094	1	8255	8255		35.612	0.68019	1	546970	+		30325	14495	17557	17558	37399	37399					0.063410166695121
NESSKDIITKL	11	Unmodified	_NESSKDIITKL_					0	0	0			REV__nc|ENSG00000105953|Q02218-2|OGDH	REV__nc|ENSG00000105953|Q02218-2|OGDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.56646728515625	3	416.566237	1246.67688	0.05123	2.1341E-05	0.46793	0.00019492	0.51916	0.00021627	416.566522330995	39.2	1.2079	39.293	38.786	39.994	0.09267					117	43	4	0	0	0	0.14222	3	8249	8197;8249;8300		25.438	4.1464	1	2004000	+		30326	14495	17557	17558	37400;37401;37402	37401					0.063410166695121
NESSKDIITKL	11	Unmodified	_NESSKDIITKL_					0	0	0			REV__nc|ENSG00000105953|Q02218-2|OGDH	REV__nc|ENSG00000105953|Q02218-2|OGDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3463745117188	2	624.345717	1246.67688	0.28445	0.00017759	0.015573	9.7229E-06	0.30002	0.00018732	624.346112362165	39.165	0.81342	39.265	38.923	39.736	0.099407					62	28	4	0	0	0	0.15094	1	8197	8197		35.612	0.68019	1	573960	+		30327	14495	17557	17558	37403	37403					0.063410166695121
NESWYHRYQNK	11	Unmodified	_NESWYHRYQNK_					0	0	0			REV__nc|ENSG00000067182|P19438-5|TNFRSF1A	REV__nc|ENSG00000067182|P19438-5|TNFRSF1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.2643127441406	3	508.904135	1523.69057	0.2167	0.00011028	-2.0975	-0.0010674	-1.8808	-0.00095717	509.23615910708213	21.75	0.11301	21.701	21.661	21.774	-0.049377					5	3	2	0	0	0	0.33334	1	2946	2946		1.2148	0.80657	1	65523	+		30328	13687	17558	17559	37404	37404					-0.05032312778689629
NEVDIVGNIQ	10	Unmodified	_NEVDIVGNIQ_					0	0	0		nc|ENSG00000111726|Q8NFW8-2|CMAS;ENSG00000111726|ENST00000229329|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	nc|ENSG00000111726|Q8NFW8-2|CMAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3226318359375	2	550.782753	1099.55095	0.38666	0.00021297	2.4049	0.0013246	2.7916	0.0015376	551.2854015347699	26.656	0.22726	26.617	26.519	26.746	-0.038671					10	7	2	0	0	0	0.3144	1	4406	4406		5.2969	0	1	72597			30329	2385	17559	17560	37405	37405					0.005159298840908377
NEVLIRLYR	9	Unmodified	_NEVLIRLYR_					0	0	0			REV__nc|ENSG00000166105|Q8NCI6-2|GLB1L3	REV__nc|ENSG00000166105|Q8NCI6-2|GLB1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.3486328125	2	588.348397	1174.68224	0.069563	4.0927E-05	0.3741	0.0002201	0.44367	0.00026103	588.3485020913603	14.816	0.28716	14.706	14.56	14.847	-0.10981					24	9	4	0	0	0	0.35512	1	877	877		0.6015	0	1	82546	+		30330	17291	17560	17561	37406	37406					0.10188785042646487
NEVLRQKLF	9	Unmodified	_NEVLRQKLF_					0	0	0		nc|ENSG00000105875|A4D1P6-2|WDR91;ENSG00000105875|ENST00000354475|WDR91;nc|ENSG00000105875|A4D1P6-3|WDR91;ENST00000466182.5_1_7:134882699-134896254:-|nuORF	nc|ENSG00000105875|A4D1P6-2|WDR91	nc|ENSG00000105875|A4D1P6-2|WDR91	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.778564453125	2	573.835123	1145.65569	0.4423	0.00025381	-0.68207	-0.0003914	-0.23977	-0.00013759	573.83463115172	48.129	0.68152	48.129	48.012	48.694	0					30	23	2	0	0	0	0.25526	1	11091	11091		7.9102	0	1	335640			30331	2032	17561	17562	37407	37407					0.08869096151306621
NEVLRQKLF	9	Unmodified	_NEVLRQKLF_					0	0	0		nc|ENSG00000105875|A4D1P6-2|WDR91;ENSG00000105875|ENST00000354475|WDR91;nc|ENSG00000105875|A4D1P6-3|WDR91;ENST00000466182.5_1_7:134882699-134896254:-|nuORF	nc|ENSG00000105875|A4D1P6-2|WDR91	nc|ENSG00000105875|A4D1P6-2|WDR91	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.7784423828125	2	573.835123	1145.65569	0.73093	0.00041943	-0.49661	-0.00028497	0.23431	0.00013446	573.8345549813682	48.081	0.6433	48.129	48.049	48.693	0.04752					41	23	2	0	0	0	0.25202	1	11051	11051		10.824	0	1	263610			30332	2032	17561	17562	37408	37408					0.08869096151306621
NEVRFGKRRA	10	Unmodified	_NEVRFGKRRA_					0	0	0			REV__nc|ENSG00000107447|P04053-2|DNTT	REV__nc|ENSG00000107447|P04053-2|DNTT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2467041015625	3	411.570539	1231.68979	0.090689	3.7325E-05	-0.36978	-0.00015219	-0.27909	-0.00011486	411.5703540128496	24.84	0.39852	24.784	24.6	24.999	-0.055931					21	13	2	0	0	0	0.32068	1	3894	3894		3.5871	0.95582	1	53468	+		30333	14553	17562	17563	37409	37409					0.08320937362964287
NEWHVFLDE	9	Unmodified	_NEWHVFLDE_					0	0	0			REV__ENSG00000180219|ENST00000324341|GARIN6	REV__ENSG00000180219|ENST00000324341|GARIN6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.31005859375	2	594.769645	1187.52474	0.64848	0.0003857	-2.9075	-0.0017293	-2.259	-0.0013436	594.7672696138353	48.394	0.15074	48.394	48.298	48.448	0					7	4	2	0	0	0	0.25202	1	11080	11080		10.824	0.75	1	113940	+		30334	18104	17563	17564	37410	37410					-0.06152339287382347
NEYEKWLENK	10	Unmodified	_NEYEKWLENK_					0	0	0		ENSG00000164114|ENST00000311277|MAP9	ENSG00000164114|ENST00000311277|MAP9	ENSG00000164114|ENST00000311277|MAP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.5541076660156	3	451.55422	1351.64083	0.30446	0.00013748	-0.18703	-8.4455E-05	0.11743	5.3028E-05	451.5540948547409	48.685	0.85662	48.685	48.386	49.243	0					77	30	4	0	0	0	0.28877	1	11130	11130		21.799	0.55808	1	3400500			30335	5792	17564	17565	37411	37411					-0.02092440507340143
NEYEKWLENK	10	Unmodified	_NEYEKWLENK_					0	0	0		ENSG00000164114|ENST00000311277|MAP9	ENSG00000164114|ENST00000311277|MAP9	ENSG00000164114|ENST00000311277|MAP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.5541687011719	3	451.55422	1351.64083	0.39597	0.0001788	-0.14199	-6.4117E-05	0.25398	0.00011469	451.5541327286678	48.686	0.954	48.731	48.388	49.342	0.044891					85	34	4	0	0	0	0.28877	2	11140	11140;11186		21.799	3.1828	1	3703900			30336	5792	17564	17565	37412;37413	37412					-0.02092440507340143
NEYEKWLENK	10	Unmodified	_NEYEKWLENK_					0	0	0		ENSG00000164114|ENST00000311277|MAP9	ENSG00000164114|ENST00000311277|MAP9	ENSG00000164114|ENST00000311277|MAP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.55419921875	3	451.55422	1351.64083	0.27385	0.00012366	-0.13542	-6.115E-05	0.13843	6.2507E-05	451.55412392222144	48.608	0.73721	48.64	48.359	49.096	0.032043					79	26	4	0	0	0	0.28877	1	11139	11139		21.799	2.6555	1	3237800			30337	5792	17564	17565	37414	37414					-0.02092440507340143
NEYKLSATNKI	11	Unmodified	_NEYKLSATNKI_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.8463134765625	2	640.845884	1279.67722	0.48777	0.00031258	0.2485	0.00015925	0.73626	0.00047183	640.8459782006863	36.001	0.39909	36.001	35.8	36.2	0					33	14	3	0	0	0	0.24435	1	7281	7281		27.223	0	1	298330	+		30338	13950	17565	17566	37415	37415					0.04856436389400187
NEYKLSATNKI	11	Unmodified	_NEYKLSATNKI_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	640.845884	1279.67722	0.48777	0.00031258	0.2485	0.00015925	0.73626	0.00047183	640.8459782006863	36.001	0.39909	36.001	35.8	36.2	0	0.031991	0.00028184	NaN	27.223	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298330	+		30339	13950	17565	17566							0.04856436389400187
NEYKLSATNKI	11	Unmodified	_NEYKLSATNKI_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	640.845884	1279.67722	0.60069	0.00038495	0.13365	8.5649E-05	0.73434	0.0004706	640.8459158478086	35.9	0.40453	35.982	35.739	36.143	0.082359	0.012988	0.00013464	NaN	27.223	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355240	+		30340	13950	17565	17566							0.04856436389400187
NEYLLQQLN	9	Unmodified	_NEYLLQQLN_					0	0	0		nc|ENSG00000159708|Q1X8D7-3|LRRC36;nc|ENSG00000159708|Q1X8D7-2|LRRC36;ENSG00000159708|ENST00000329956|LRRC36	nc|ENSG00000159708|Q1X8D7-3|LRRC36	nc|ENSG00000159708|Q1X8D7-3|LRRC36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.3036499023438	2	567.793121	1133.57169	0.31355	0.00017803	-0.70931	-0.00040274	-0.39575	-0.00022471	567.794562252061	59.725	0.17003	59.714	59.593	59.763	-0.011486					7	5	2	0	0	0	0.23784	1	14534	14534		5.7319	0	1	184550			30341	5421	17566	17567	37416	37416					0.01024520263786144
NEYPEETNQF	10	Unmodified	_NEYPEETNQF_					0	0	0			REV__nc|ENSG00000085514|Q9UKJ1-3|PILRA	REV__nc|ENSG00000085514|Q9UKJ1-3|PILRA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.5857849121094	3	424.17893	1269.51496	-0.36932	-0.00015666	-2.1565	-0.00091474	-2.5258	-0.0010714	424.17797320080285	18.52	0.37281	18.462	18.255	18.628	-0.058174					20	12	2	0	0	0	0.3213	1	1934	1934		1.9064	0.71303	1	70573	+		30342	13963	17567	17568	37417	37417					-0.10901572083434985
NFADAVFRF	9	Unmodified	_NFADAVFRF_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13;ENST00000471925.1_1_3:132175145-132176248:+|nuORF	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2191162109375	2	543.771991	1085.52943	0.53521	0.00029103	0.024328	1.3229E-05	0.55953	0.00030426	543.7715582741797	71.84	0.44026	71.84	71.664	72.104	0					26	15	2	0	0	0	0.22143	1	18330	18330		24.991	3.2443	1	122730			30343	4132	17568	17569	37418	37418					-0.009914103539813368
NFADAVFRF	9	Unmodified	_NFADAVFRF_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13;ENST00000471925.1_1_3:132175145-132176248:+|nuORF	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8047485351562	2	543.771991	1085.52943	0.62924	0.00034216	-0.33466	-0.00018198	0.29458	0.00016019	543.771520188338	71.809	0.43565	71.866	71.68	72.116	0.056572					25	15	2	0	0	0	0.12329	1	18295	18295		49.554	27.808	1	141810			30344	4132	17568	17569	37419	37419					-0.009914103539813368
NFADAVFRF	9	Unmodified	_NFADAVFRF_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13;ENST00000471925.1_1_3:132175145-132176248:+|nuORF	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2924194335938	2	543.771991	1085.52943	0.6793	0.00036939	-0.5912	-0.00032148	0.088099	4.7906E-05	543.7716404966646	71.962	0.37838	71.935	71.738	72.117	-0.027267					21	13	2	0	0	0	0.24289	1	18356	18356		13.042	9.0981	1	160400			30345	4132	17568	17569	37420	37420					-0.009914103539813368
NFAIVGAMF	9	Oxidation (M)	_NFAIVGAM(Oxidation (M))F_		NFAIVGAM(1)F		NFAIVGAM(110)F	0	0	1		ENSG00000177370|ENST00000327158|TIMM22	ENSG00000177370|ENST00000327158|TIMM22	ENSG00000177370|ENST00000327158|TIMM22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.2444152832031	2	493.244221	984.473888	0.27603	0.00013615	0.22793	0.00011242	0.50395	0.00024857	493.2437279388738	73.678	0.52564	73.73	73.334	73.86	0.052361					35	18	4	0	0	0	0.0020518	1	18807	18807		109.63	65.222	1	236440			30346	6981	17569	17570	37421	37421		784			-0.018969598659282383
NFAIVGAMF	9	Oxidation (M)	_NFAIVGAM(Oxidation (M))F_					0	0	1		ENSG00000177370|ENST00000327158|TIMM22	ENSG00000177370|ENST00000327158|TIMM22	ENSG00000177370|ENST00000327158|TIMM22	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.244221	984.473888	0.13876	6.8445E-05	-0.31591	-0.00015582	-0.17715	-8.7377E-05	493.24360644214124	73.644	0.83948	73.644	73.053	73.893	0	-0.055534	-0.00027235	NaN	109.63	43	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318650			30347	6981	17569	17570				784			-0.018969598659282383
NFAIVGAMF	9	Oxidation (M)	_NFAIVGAM(Oxidation (M))F_					0	0	1		ENSG00000177370|ENST00000327158|TIMM22	ENSG00000177370|ENST00000327158|TIMM22	ENSG00000177370|ENST00000327158|TIMM22	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.244221	984.473888	0.27113	0.00013373	-0.081789	-4.0342E-05	0.18934	9.3389E-05	493.24394404426914	73.755	0.53729	73.724	73.373	73.91	-0.030655	0.024856	-4.1395E-05	NaN	109.63	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298700			30348	6981	17569	17570				784			-0.018969598659282383
NFEETWKQ	8	Unmodified	_NFEETWKQ_					0	0	0			REV__ENSG00000113318|ENST00000265081|MSH3	REV__ENSG00000113318|ENST00000265081|MSH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2796020507812	2	541.251089	1080.48762	0.31999	0.0001732	-0.22349	-0.00012096	0.096506	5.2234E-05	541.2509702763181	16.19	0.6789	16.19	15.842	16.521	0					33	23	2	0	0	0	0.34337	1	1286	1286		5.2307	1.2863	1	37715	+		30349	14804	17570	17571	37422	37422					-0.04940010833138331
NFEETWKQ	8	Unmodified	_NFEETWKQ_					0	0	0			REV__ENSG00000113318|ENST00000265081|MSH3	REV__ENSG00000113318|ENST00000265081|MSH3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.251089	1080.48762	0.43668	0.00023636	-0.49856	-0.00026985	-0.061877	-3.3491E-05	541.2508591646393	16.114	0.63414	16.051	15.808	16.442	-0.062532	-0.06926	-0.00011686	NaN	5.2307	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36299	+		30350	14804	17570	17571							-0.04940010833138331
NFFRPHNTKV	10	Unmodified	_NFFRPHNTKV_					0	0	0			REV__nc|ENSG00000144644|Q6ZQY3-3|GADL1	REV__nc|ENSG00000144644|Q6ZQY3-3|GADL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.3367919921875	2	630.335821	1258.65709	0.25886	0.00016317	1.1357	0.00071585	1.3945	0.00087902	630.336585991022	49.571	0.42958	49.603	49.383	49.813	0.032043					31	15	3	0	0	0	0.35637	1	11463	11463		11.495	2.5185	1	362930	+		30351	16248	17571	17572	37423	37423					0.03810730240047633
NFFRYFLRLSD	11	Unmodified	_NFFRYFLRLSD_					0	0	0		ENSG00000132446|ENST00000359202|FTHL17	ENSG00000132446|ENST00000359202|FTHL17	ENSG00000132446|ENST00000359202|FTHL17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7845153808594	3	493.257738	1476.75138	0.15588	7.6889E-05	0.24593	0.00012131	0.40181	0.0001982	493.5931671635665	22.824	0.13364	22.737	22.628	22.762	-0.087608					5	4	2	0	0	0	0.33334	1	3267	3267		1.2148	0.88556	1	34047			30352	3633	17572	17573	37424	37424					0.032078242715442684
NFFSSKGSGV	10	Unmodified	_NFFSSKGSGV_					0	0	0			REV__ENST00000474002.1_1_1:79095456-79101246:+|nuORF	REV__ENST00000474002.1_1_1:79095456-79101246:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.239501953125	2	515.253631	1028.49271	0.24144	0.0001244	-0.71738	-0.00036963	-0.47594	-0.00024523	515.2531680376696	55.606	0.44541	55.587	55.379	55.824	-0.019081					40	16	3	0	0	0	0.33104	1	13258	13258		16.149	0.30192	1	626910	+		30353	15894	17573	17574	37425	37425					-0.02039706970504085
NFFTDSLLT	9	Unmodified	_NFFTDSLLT_					0	0	0		ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8139038085938	2	529.263665	1056.51278	0.49008	0.00025938	-1.3113	-0.00069402	-0.82122	-0.00043464	529.2631105291545	80.189	1.0458	80.189	79.467	80.513	0					51	39	2	0	0	0	0.23235	1	20884	20884		21.537	7.6309	1	341850			30354	7179	17574	17575	37426	37426					-0.013219560305742561
NFFTDSLLT	9	Unmodified	_NFFTDSLLT_					0	0	0		ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.813720703125	2	529.263665	1056.51278	0.36701	0.00019424	-1.7083	-0.00090414	-1.3413	-0.0007099	529.2629353603306	80.125	0.68929	80.189	79.776	80.466	0.064102					40	25	2	0	0	0	0.18123	1	20828	20828		34.402	10.381	1	247740			30355	7179	17574	17575	37427	37427					-0.013219560305742561
NFFTDSLLT	9	Unmodified	_NFFTDSLLT_					0	0	0		ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7765502929688	2	529.263665	1056.51278	0.49319	0.00026103	-2.0501	-0.001085	-1.5569	-0.000824	529.2629110286821	80.714	0.46266	80.687	80.405	80.868	-0.026825					28	16	2	0	0	0	0.22674	1	20996	20996		17.113	0	1	293940			30356	7179	17574	17575	37428	37428					-0.013219560305742561
NFFTDSLLT	9	Unmodified	_NFFTDSLLT_					0	0	0		ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	ENSG00000180318|ENST00000316824|ALX1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	529.263665	1056.51278	0.49474	0.00026185	-1.6717	-0.00088475	-1.1769	-0.0006229	529.2628766577212	80.275	0.62688	80.248	79.778	80.405	-0.026825	0.039436	-0.00012587	NaN	34.402	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278020			30357	7179	17574	17575							-0.013219560305742561
NFGVKLAQ	8	Unmodified	_NFGVKLAQ_					0	0	0		ENSG00000204131|ENST00000633930|NHSL2;nc|ENSG00000204131|Q5HYW2-2|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.1877136230469	2	438.750527	875.486502	0.44352	0.00019459	-2.7383	-0.0012014	-2.2948	-0.0010068	438.74886670828914	58.292	0.43676	58.274	58.005	58.442	-0.017197					21	15	2	0	0	0	0.34046	1	14124	14124		9.3474	0	1	121250			30358	8199	17575	17576	37429	37429					0.043778195886034155
NFGYGFSH	8	Unmodified	_NFGYGFSH_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6;nc|ENSG00000155754|Q53TS8-2|C2CD6;nc|ENSG00000155754|Q53TS8-3|C2CD6;nc|ENSG00000155754|Q53TS8-1|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.26409912109375	2	464.701035	927.387516	0.38233	0.00017767	0.29601	0.00013756	0.67834	0.00031522	464.70115754923455	50.832	0.45765	50.832	50.623	51.081	0					28	16	2	0	0	0	0.34319	1	11857	11857		2.5775	0	1	291140			30359	5192	17576	17577	37430	37430					-0.07908203376280198
NFIDIELFN	9	Unmodified	_NFIDIELFN_					0	0	0			REV__ENST00000465030.1_1_X:70280941-70288225:-|nuORF	REV__ENST00000465030.1_1_X:70280941-70288225:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.7645263671875	2	562.784764	1123.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.657	1	22.569	22.069	23.069	-0.087608								0	0	0	0.23852	1	3214	3214		10.074	1.3285	1		+		30360	16375	17577	17578	37431	37431					-0.0018598062220007705
NFILDENRIK	10	Unmodified	_NFILDENRIK_					0	0	0			REV__ENSG00000096968|ENST00000381652|JAK2	REV__ENSG00000096968|ENST00000381652|JAK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.23492431640625	3	421.234822	1260.68264	0.14616	6.157E-05	-0.40254	-0.00016956	-0.25638	-0.00010799	421.2346647537514	20.142	0.50399	20.026	19.812	20.316	-0.11592					34	18	3	0	0	0	0.32095	1	2444	2444		3.0723	0	1	118680	+		30361	14117	17578	17579	37432	37432					0.0627215997183157
NFILDENRIK	10	Unmodified	_NFILDENRIK_					0	0	0			REV__ENSG00000096968|ENST00000381652|JAK2	REV__ENSG00000096968|ENST00000381652|JAK2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	421.234822	1260.68264	0.27662	0.00011652	-0.00061722	-2.5999E-07	0.276	0.00011626	421.2348611593509	20.107	0.41307	20.051	19.762	20.175	-0.055693	0.03256	0.00012585	NaN	3.0723	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107720	+		30362	14117	17578	17579							0.0627215997183157
NFILHDSTK	9	Unmodified	_NFILHDSTK_					0	0	0			REV__ENSG00000151025|ENST00000376351|GPR158	REV__ENSG00000151025|ENST00000376351|GPR158	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.29638671875	2	537.782556	1073.55056	0.44577	0.00023973	1.3871	0.00074596	1.8329	0.00098568	537.783558281361	30.832	0.29927	30.832	30.648	30.948	0					18	10	2	0	0	0	0.24471	1	5690	5690		17.113	6.289	1	166350	+		30363	16523	17579	17580	37433	37433					0.01672554954870975
NFILKMLI	8	Unmodified	_NFILKMLI_					0	0	0		Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|202|3|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|202|3|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|202|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.3042907714844	2	496.304081	990.59361	0.41687	0.0002069	-0.18064	-8.9651E-05	0.23624	0.00011725	496.30387669744533	74.068	3.1764	74.068	73.191	76.367	0					302	112	4	0	0	0	0.45942	2	18852	18852;19005		2.5775	2.5775	1	4670700			30364	12384	17580	17581	37434;37435	37434					0.09793653478641318
NFILKMLI	8	Unmodified	_NFILKMLI_					0	0	0		Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|202|3|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|202|3|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|202|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3042907714844	2	496.304081	990.59361	0.356	0.00017669	-0.097131	-4.8207E-05	0.25887	0.00012848	496.303888308668	73.998	3.3109	74.051	73.17	76.481	0.052361					303	118	4	0	0	0	0.45942	2	18840	18840;18944		2.5775	0.27475	1	3943000			30365	12384	17580	17581	37436;37437	37436					0.09793653478641318
NFILKMLI	8	Unmodified	_NFILKMLI_					0	0	0		Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|202|3|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|202|3|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|202|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.30419921875	2	496.304081	990.59361	0.41396	0.00020545	-0.033477	-1.6615E-05	0.38048	0.00018883	496.30394259333224	74.198	1.8802	74.168	73.18	75.06	-0.030663					230	67	4	0	0	0	0.45942	2	18846	18846;19173		2.5775	2.5775	1	4288300			30366	12384	17580	17581	37438;37439	37438					0.09793653478641318
NFKFCSVETL	10	Unmodified	_NFKFCSVETL_					0	0	0			REV__ENSG00000204952|ENST00000378079|FBXO47	REV__ENSG00000204952|ENST00000378079|FBXO47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.2927856445312	2	594.291899	1186.56925	0.57137	0.00033956	1.2924	0.00076804	1.8637	0.0011076	594.2926341712964	54.065	0.55802	54.128	53.852	54.41	0.063202					49	20	3	0	0	0	0.37751	1	12793	12793		7.609	4.0125	1	1116700	+		30367	18973	17581	17582	37440	37440					-0.016576514655525898
NFKFCSVETL	10	Unmodified	_NFKFCSVETL_					0	0	0			REV__ENSG00000204952|ENST00000378079|FBXO47	REV__ENSG00000204952|ENST00000378079|FBXO47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2929077148438	2	594.291899	1186.56925	0.56682	0.00033686	0.91184	0.0005419	1.4787	0.00087875	594.292229942103	54.245	0.55841	54.229	53.893	54.451	-0.015923					51	19	3	0	0	0	0.35231	1	12879	12879		12.241	1.4167	1	1063600	+		30368	18973	17581	17582	37441	37441					-0.016576514655525898
NFLKREPNQ	9	Unmodified	_NFLKREPNQ_					0	0	0		ENSG00000123213|ENST00000380985|NLN	ENSG00000123213|ENST00000380985|NLN	ENSG00000123213|ENST00000380985|NLN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.8055419921875	2	573.306729	1144.59891	0.53226	0.00030515	0.3904	0.00022382	0.92266	0.00052897	573.306942481213	72.303	0.53688	72.359	72.005	72.542	0.056572					30	19	2	0	0	0	0.25526	1	18417	18417		7.9102	0.3012	1	171850			30369	3093	17582	17583	37442	37442					0.03239048594787164
NFMAVQDDTAK	11	Unmodified	_NFMAVQDDTAK_					0	0	0		nc|ENSG00000149782|Q01970-2|PLCB3;ENSG00000149782|ENST00000279230|PLCB3	nc|ENSG00000149782|Q01970-2|PLCB3	nc|ENSG00000149782|Q01970-2|PLCB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2211608886719	3	413.860656	1238.56014	0.22683	9.3878E-05	-2.1357	-0.00088389	-1.9089	-0.00079002	413.8596231544372	37.013	0.39972	37.013	36.724	37.124	0					25	13	2	0	0	0	0.33175	1	7596	7596		0.32927	0	1	180850			30370	4892	17583	17584	37443	37443					-0.04960044821905285
NFNSWAASSFF	11	Unmodified	_NFNSWAASSFF_					0	0	0		ENSG00000170293|ENST00000307526|CMTM8;nc|ENSG00000170293|Q8IZV2-2|CMTM8	ENSG00000170293|ENST00000307526|CMTM8	ENSG00000170293|ENST00000307526|CMTM8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.5248718261719	3	426.524372	1276.55129	-0.15675	-6.686E-05	1.3752	0.00058658	1.2185	0.00051972	426.52500007132795	22.907	0.69589	22.862	22.553	23.249	-0.044865					54	24	3	0	0	0	0.47546	1	3315	3315		0.45452	0.046251	1	242290			30371	6440	17584	17585	37444	37444					-0.0759265039607726
NFNWRYLF	8	Unmodified	_NFNWRYLF_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.7899780273438	2	580.287808	1158.56106	0.62637	0.00036347	-0.1347	-7.8164E-05	0.49167	0.00028531	580.2875786064484	74.703	1.5204	74.703	74.191	75.711	0					123	53	4	0	0	0	0.39956	1	19047	19047		19.439	0.18201	1	4030300			30372	2610	17585	17586	37445	37445					-0.01187417600021945
NFNWRYLF	8	Unmodified	_NFNWRYLF_					0	0	0		nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2880859375	2	580.287808	1158.56106	0.52246	0.00030318	0.080622	4.6784E-05	0.60308	0.00034996	580.2876648923099	74.742	1.5023	74.71	74.11	75.612	-0.031487					111	54	4	0	0	0	0.31375	1	19110	19110		26.341	26.341	1	4026600			30373	2610	17585	17586	37446	37446					-0.01187417600021945
NFPKKLQSL	9	Unmodified	_NFPKKLQSL_					0	0	0		nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF	nc|ENSG00000041515|Q9Y6X6-3|MYO16	nc|ENSG00000041515|Q9Y6X6-3|MYO16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.8316040039062	2	537.818941	1073.62333	0.35191	0.00018926	0.13825	7.4355E-05	0.49016	0.00026362	537.8191989436552	64.956	0.61977	64.956	64.699	65.319	0					43	19	3	0	0	0	0.22188	1	16265	16265		20.454	1.1966	1	761170			30374	606	17586	17587	37447	37447					0.08946308748318188
NFPKKLQSL	9	Unmodified	_NFPKKLQSL_					0	0	0		nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF	nc|ENSG00000041515|Q9Y6X6-3|MYO16	nc|ENSG00000041515|Q9Y6X6-3|MYO16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.83154296875	2	537.818941	1073.62333	0.2941	0.00015817	0.39094	0.00021025	0.68503	0.00036842	537.8195744236249	64.954	0.5067	64.943	64.721	65.227	-0.01133					39	18	3	0	0	0	0.17787	1	16203	16203		26.884	1.4843	1	564480			30375	606	17586	17587	37448	37448					0.08946308748318188
NFPLEPIE	8	Unmodified	_NFPLEPIE_					0	0	0		ENSG00000100601|ENST00000216489|ALKBH1	ENSG00000100601|ENST00000216489|ALKBH1	ENSG00000100601|ENST00000216489|ALKBH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7477111816406	2	479.74765	957.480748	0.18668	8.9557E-05	0.081908	3.9295E-05	0.26858	0.00012885	479.7475086107711	91.091	0.91666	91.091	90.737	91.653	0					154	71	3	0	0	0	0.46022	1	24232	24232		2.3027	0	1	6154700			30376	1613	17587	17588	37449	37449					0.0003067628629196406
NFPNNYPNNWE	11	Unmodified	_NFPNNYPNNWE_					0	0	0		CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant;CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant;CUBN|p.K3401Rfs*11|1|0.02|ENSG00000107611|chr10:16835174-16835175|-/TTTTGAATGATTCC|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN	CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant	CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2959289550781	3	470.202069	1407.58438	-0.23643	-0.00011117	1.0556	0.00049634	0.81915	0.00038517	470.53677593327933	13.63	0.24769	13.53	13.416	13.663	-0.099291					12	8	2	0	0	0	0.33347	1	486	486		0.45452	0	1	37135			30377	249	17588	17589	37450	37450					-0.10311068344026353
NFPRRNKK	8	Unmodified	_NFPRRNKK_					0	0	0			REV__ENST00000423432.6_1_X:71483217-71483493:+|nuORF	REV__ENST00000423432.6_1_X:71483217-71483493:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2933959960938	2	530.312149	1058.60975	0.33507	0.00017769	-0.63854	-0.00033863	-0.30347	-0.00016094	530.3117739165741	19.194	0.34858	19.138	18.961	19.309	-0.055693					15	11	2	0	0	0	0.34437	1	2115	2115		0.69038	0.69038	1	33083	+		30378	20881	17589	17590	37451	37451					0.0827849575973687
NFPTQDVW	8	Unmodified	_NFPTQDVW_					0	0	0			REV__ENSG00000166527|ENST00000299665|CLEC4D	REV__ENSG00000166527|ENST00000299665|CLEC4D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.3264465332031	2	503.735074	1005.4556	0.1816	9.1479E-05	-0.92933	-0.00046814	-0.74773	-0.00037666	503.73467754274225	62.161	0.70446	62.258	61.841	62.546	0.096989					37	25	2	0	0	0	0.34092	1	15321	15321		13.508	0	1	322160	+		30379	17327	17590	17591	37452	37452					-0.046913785162928434
NFQIEHHLF	9	Unmodified	_NFQIEHHLF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF;ENST00000533676.5_1_11:61641288-61643947:-|nuORF;nc|ENSG00000274150|A8MWK0|FADS2B;ENSG00000221968|ENST00000278829|FADS3;nc|ENSG00000149485|O60427-2|FADS1;nc|ENSG00000149485|O60427|FADS1;ENSG00000149485|ENST00000350997|FADS1	ENSG00000134824|ENST00000278840|FADS2;ENSG00000221968|ENST00000278829|FADS3;nc|ENSG00000149485|O60427-2|FADS1	ENSG00000134824|ENST00000278840|FADS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.7958984375	2	592.795998	1183.57744	0.53066	0.00031457	-0.041284	-2.4473E-05	0.48938	0.0002901	592.7957162442522	49.49	1.1074	49.49	49.218	50.326	0					94	40	3	0	0	0	3.1045E-06	1	11382	11382		163.04	94.955	1	1590900			30380	3816;8430;4870	17591	17592	37453	37453					-0.007003364339425389
NFQIEHHLF	9	Unmodified	_NFQIEHHLF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF;ENST00000533676.5_1_11:61641288-61643947:-|nuORF;nc|ENSG00000274150|A8MWK0|FADS2B;ENSG00000221968|ENST00000278829|FADS3;nc|ENSG00000149485|O60427-2|FADS1;nc|ENSG00000149485|O60427|FADS1;ENSG00000149485|ENST00000350997|FADS1	ENSG00000134824|ENST00000278840|FADS2;ENSG00000221968|ENST00000278829|FADS3;nc|ENSG00000149485|O60427-2|FADS1	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.7962646484375	2	592.795998	1183.57744	0.42172	0.00025	-0.079106	-4.6894E-05	0.34262	0.0002031	592.7957945013723	49.558	1.0767	49.602	49.266	50.343	0.044891					85	40	3	0	0	0	4.3828E-07	3	11403	11403;11447;11497		163.04	94.955	1	2558500			30381	3816;8430;4870	17591	17592	37454;37455;37456	37454					-0.007003364339425389
NFQIEHHLF	9	Unmodified	_NFQIEHHLF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF;ENST00000533676.5_1_11:61641288-61643947:-|nuORF;nc|ENSG00000274150|A8MWK0|FADS2B;ENSG00000221968|ENST00000278829|FADS3;nc|ENSG00000149485|O60427-2|FADS1;nc|ENSG00000149485|O60427|FADS1;ENSG00000149485|ENST00000350997|FADS1	ENSG00000134824|ENST00000278840|FADS2;ENSG00000221968|ENST00000278829|FADS3;nc|ENSG00000149485|O60427-2|FADS1	ENSG00000134824|ENST00000278840|FADS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.7960815429688	2	592.795998	1183.57744	0.3439	0.00020386	0.13143	7.7912E-05	0.47533	0.00028177	592.7958574960437	49.511	1.2444	49.543	49.18	50.424	0.032043					99	45	3	0	0	0	2.8826E-05	1	11363	11363		149.91	81.833	1	1816300			30382	3816;8430;4870	17591	17592	37457	37457					-0.007003364339425389
NFQKSEFKF	9	Unmodified	_NFQKSEFKF_					0	0	0		ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.2904663085938	2	587.798206	1173.58186	0.52458	0.00030835	0.60678	0.00035667	1.1314	0.00066501	587.7984834947724	55.536	0.38214	55.606	55.446	55.828	0.070885					19	13	2	0	0	0	0.24848	1	13325	13325		9.3831	0	1	375280			30383	2827	17592	17593	37458	37458					0.002011279889757134
NFRMDIIM	8	Unmodified	_NFRMDIIM_					0	0	0			REV__ENSG00000265203|ENST00000584701|RBP3	REV__ENSG00000265203|ENST00000584701|RBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.8212280273438	2	520.256805	1038.49906	0.46763	0.00024329	2.1386	0.0011126	2.6062	0.0013559	520.2581224734504	68.899	0.90445	68.899	68.408	69.313	0					46	32	2	0	0	0	0.33993	1	17474	17474		11.64	0	1	160320	+		30384	19295	17593	17594	37459	37459					-0.018652283350093057
NFRRFTVSL	9	Unmodified	_NFRRFTVSL_					0	0	0		ENST00000367728.1_1_1:172411833-172412016:-|nuORF	ENST00000367728.1_1_1:172411833-172412016:-|nuORF	ENST00000367728.1_1_1:172411833-172412016:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.8037719726562	2	570.31964	1138.62473	0.48782	0.00027822	-1.2231	-0.00069754	-0.73525	-0.00041933	570.3189355389446	36.658	0.30215	36.746	36.566	36.868	0.08741					14	10	2	0	0	0	0.24913	1	7475	7475		1.8442	0	1	135040			30385	9746	17594	17595	37460	37460					0.06095942837077928
NFSKHDIIT	9	Unmodified	_NFSKHDIIT_					0	0	0		ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.296142578125	2	537.782556	1073.55056	0.33904	0.00018233	1.8255	0.00098173	2.1646	0.0011641	537.7838385248791	30.845	0.39048	30.872	30.584	30.975	0.027157					21	13	2	0	0	0	0.24688	1	5646	5646		14.838	0.93222	1	138910			30386	8070	17595	17596	37461	37461					0.016725549548937124
NFSRYAVMEC	10	Unmodified	_NFSRYAVMEC_					0	0	0			REV__nc|ENSG00000162378|Q9C0D3-2|ZYG11B	REV__nc|ENSG00000162378|Q9C0D3-2|ZYG11B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.7669677734375	2	610.265358	1218.51616	0.46479	0.00028365	-0.5213	-0.00031813	-0.056507	-3.4485E-05	610.766487873739	35.687	0.44029	35.687	35.492	35.932	0					21	15	2	0	0	0	0.38773	1	7194	7194		5.7319	0	1	198830	+		30387	16974	17596	17597	37462	37462					-0.08435352519859407
NFSRYAVMEC	10	Unmodified	_NFSRYAVMEC_					0	0	0			REV__nc|ENSG00000162378|Q9C0D3-2|ZYG11B	REV__nc|ENSG00000162378|Q9C0D3-2|ZYG11B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	610.265358	1218.51616	0.46479	0.00028365	-0.5213	-0.00031813	-0.056507	-3.4485E-05	610.766487873739	35.687	0.44029	35.687	35.492	35.932	0	0.0069988	-0.00069076	NaN	5.7319	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198830	+		30388	16974	17596	17597							-0.08435352519859407
NFSRYAVMEC	10	Unmodified	_NFSRYAVMEC_					0	0	0			REV__nc|ENSG00000162378|Q9C0D3-2|ZYG11B	REV__nc|ENSG00000162378|Q9C0D3-2|ZYG11B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	610.265358	1218.51616	0.4222	0.00025765	0.27592	0.00016838	0.69811	0.00042603	610.2656620764706	35.653	0.38387	35.735	35.516	35.9	0.082359	0.055053	0.00028227	NaN	5.7319	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212840	+		30389	16974	17596	17597							-0.08435352519859407
NFSRYAVMEC	10	Unmodified	_NFSRYAVMEC_					0	0	0			REV__nc|ENSG00000162378|Q9C0D3-2|ZYG11B	REV__nc|ENSG00000162378|Q9C0D3-2|ZYG11B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	610.265358	1218.51616	0.10796	6.5886E-05	0.3011	0.00018375	0.40906	0.00024964	610.2655204605629	35.532	0.36808	35.618	35.476	35.844	0.08625	-0.062052	0.00031301	NaN	5.7319	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283020	+		30390	16974	17596	17597							-0.08435352519859407
NFSSSNFAKQM	11	Unmodified	_NFSSSNFAKQM_					0	0	0			REV__ENSG00000100401|ENST00000356244|RANGAP1	REV__ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.7877197265625	2	630.787512	1259.56047	0.41057	0.00025898	-0.58925	-0.00037169	-0.17868	-0.00011271	630.7866555719866	63.208	1.1121	63.2	62.963	64.075	-0.0085564					70	39	3	0	0	0	0.087802	2	15629	15629;15676		42.312	9.5268	1	818420	+		30391	14192	17597	17598	37463;37464	37463					-0.058926251020466225
NFSSSNFAKQM	11	Unmodified	_NFSSSNFAKQM_					0	0	0			REV__ENSG00000100401|ENST00000356244|RANGAP1	REV__ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	630.787512	1259.56047	0.37406	0.00023595	-0.69222	-0.00043664	-0.31816	-0.00020069	630.786584280273	63.151	0.51271	63.151	62.93	63.443	0	-0.0063425	-0.00020815	NaN	42.312	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331270	+		30392	14192	17597	17598							-0.058926251020466225
NFSSSNFAKQM	11	Unmodified	_NFSSSNFAKQM_					0	0	0			REV__ENSG00000100401|ENST00000356244|RANGAP1	REV__ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	630.787512	1259.56047	0.30972	0.00019537	-0.30531	-0.00019258	0.004411	2.7824E-06	631.2892110629217	63.026	0.56534	63.122	62.88	63.445	0.095722	-0.03566	0.00027997	NaN	42.312	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	553950	+		30393	14192	17597	17598							-0.058926251020466225
NFSSSNFAKQM	11	Unmodified	_NFSSSNFAKQM_					0	0	0			REV__ENSG00000100401|ENST00000356244|RANGAP1	REV__ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	630.787512	1259.56047	0.41057	0.00025898	-0.58925	-0.00037169	-0.17868	-0.00011271	630.7866555719866	63.208	1.1121	63.2	62.963	64.075	-0.0085564	0.042002	-7.824E-05	NaN	42.312	70	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	818420	+		30394	14192	17597	17598							-0.058926251020466225
NFSTEKLTQPG	11	Unmodified	_NFSTEKLTQPG_					0	0	0			REV__ENSG00000198793|ENST00000361445|MTOR	REV__ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.7669677734375	2	611.309135	1220.60372	0.4303	0.00026305	0.076745	4.6915E-05	0.50705	0.00030996	611.3091549239487	35.921	0.51215	35.921	35.604	36.117	0					37	18	3	0	0	0	0.3325	1	7194	7194		4.897	0	1	244940	+		30395	18863	17598	17599	37465	37465					0.0022388794689049973
NFSVHGYWFRE	11	Unmodified	_NFSVHGYWFRE_					0	0	0		ENST00000602065.5_1_19:51714364-51714690:+|nuORF	ENST00000602065.5_1_19:51714364-51714690:+|nuORF	ENST00000602065.5_1_19:51714364-51714690:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2263488769531	3	481.226438	1440.65748	0.1054	5.0724E-05	-0.62216	-0.0002994	-0.51676	-0.00024868	481.2261511902705	27.136	0.83007	27.136	26.759	27.589	0					85	28	4	0	0	0	0.43513	1	4527	4527		6.6235	2.2173	1	425630			30396	12261	17599	17600	37466	37466					-0.045218948307592655
NFSVHGYWFRE	11	Unmodified	_NFSVHGYWFRE_					0	0	0		ENST00000602065.5_1_19:51714364-51714690:+|nuORF	ENST00000602065.5_1_19:51714364-51714690:+|nuORF	ENST00000602065.5_1_19:51714364-51714690:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2264709472656	3	481.226438	1440.65748	0.11266	5.4214E-05	-0.53586	-0.00025787	-0.4232	-0.00020366	481.2262142843134	27.027	0.79091	27.006	26.737	27.528	-0.02141					88	27	4	0	0	0	0.45422	1	4531	4531		4.1166	0.27072	1	409990			30397	12261	17599	17600	37467	37467					-0.045218948307592655
NFSVHGYWFRE	11	Unmodified	_NFSVHGYWFRE_					0	0	0		ENST00000602065.5_1_19:51714364-51714690:+|nuORF	ENST00000602065.5_1_19:51714364-51714690:+|nuORF	ENST00000602065.5_1_19:51714364-51714690:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.226318359375	3	481.226438	1440.65748	0.208	0.0001001	-0.64117	-0.00030855	-0.43317	-0.00020845	481.22619291638733	27.103	0.84281	27.092	26.741	27.584	-0.01156					90	29	4	0	0	0	0.43513	1	4531	4531		6.6235	2.5068	1	398380			30398	12261	17599	17600	37468	37468					-0.045218948307592655
NFSYTRSRD	9	Unmodified	_NFSYTRSRD_					0	0	0		RICTOR|p.S1323R|1|0.05|ENSG00000164327|chr5:38949881-38949881|T/G|missense_variant	RICTOR|p.S1323R|1|0.05|ENSG00000164327|chr5:38949881-38949881|T/G|missense_variant	RICTOR|p.S1323R|1|0.05|ENSG00000164327|chr5:38949881-38949881|T/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.251953125	2	573.270344	1144.52613	-0.13647	-7.8234E-05	0.87968	0.0005043	0.74321	0.00042606	573.270646704162	27.719	0.39399	27.708	27.499	27.893	-0.01156					18	13	2	0	0	0	0.31417	1	4732	4732		6.7232	0.51738	1	103280			30399	23369	17600	17601	37469	37469					-0.04034705198614574
NFSYTRSRD	9	Unmodified	_NFSYTRSRD_					0	0	0		RICTOR|p.S1323R|1|0.05|ENSG00000164327|chr5:38949881-38949881|T/G|missense_variant	RICTOR|p.S1323R|1|0.05|ENSG00000164327|chr5:38949881-38949881|T/G|missense_variant	RICTOR|p.S1323R|1|0.05|ENSG00000164327|chr5:38949881-38949881|T/G|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	573.270344	1144.52613	-0.062501	-3.583E-05	1.4928	0.00085581	1.4303	0.00081998	573.271201403012	27.761	0.39255	27.761	27.561	27.954	0	0.038184	0.00027645	NaN	6.7232	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113190			30400	23369	17600	17601							-0.04034705198614574
NFTITVENF	9	Unmodified	_NFTITVENF_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000427635.6_1_10:69682690-69747802:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7689208984375	2	542.769114	1083.52368	0.67676	0.00036733	-0.57621	-0.00031275	0.10055	5.4577E-05	542.7685309771134	67.559	0.73055	67.637	67.382	68.112	0.078041					44	25	3	0	0	0	0.099099	1	16976	16976		55.503	9.8031	1	789870			30401	4821	17601	17602	37470	37470					-0.014745536562713824
NFTITVENF	9	Unmodified	_NFTITVENF_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000427635.6_1_10:69682690-69747802:-|nuORF	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.769287109375	2	542.769114	1083.52368	0.51754	0.0002809	-0.231	-0.00012538	0.28654	0.00015552	542.7687662286751	67.717	0.72122	67.701	67.478	68.2	-0.016296					53	25	4	0	0	0	0.044188	1	17006	17006		76.825	19.103	1	926580			30402	4821	17601	17602	37471	37471					-0.014745536562713824
NFTIWSIFFL	10	Unmodified	_NFTIWSIFFL_					0	0	0		ENSG00000171133|ENST00000302681|OR2K2	ENSG00000171133|ENST00000302681|OR2K2	ENSG00000171133|ENST00000302681|OR2K2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.3461303710938	2	644.342249	1286.66995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.995	1	90.995	90.495	91.495	0								0	0	0	0.37581	1	24144	24144		3.9444	0.66309	1				30403	6516	17602	17603	37472	37472					0.038077485795838584
NFTIWSIFFL	10	Unmodified	_NFTIWSIFFL_					0	0	0		ENSG00000171133|ENST00000302681|OR2K2	ENSG00000171133|ENST00000302681|OR2K2	ENSG00000171133|ENST00000302681|OR2K2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	644.3449096679688	2	644.342249	1286.66995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.274	1	91.274	90.774	91.774	0.00046539								0	0	0	0.37581	1	24220	24220		3.9444	0.66309	1				30404	6516	17602	17603	37473	37473					0.038077485795838584
NFTNVAATF	9	Unmodified	_NFTNVAATF_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.74310302734375	2	492.742899	983.471246	0.40275	0.00019845	0.09479	4.6707E-05	0.49754	0.00024516	492.74287748319034	62.23	1.6375	62.23	61.92	63.557	0					163	60	5	0	0	0	2.4752E-08	2	15332	15332;15380		179.17	118.78	1	6122600			30405	3570	17603	17604	37474;37475	37474					-0.02115091999246488
NFTNVAATF	9	Unmodified	_NFTNVAATF_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.7431335449219	2	492.742899	983.471246	0.30256	0.00014909	0.14419	7.1047E-05	0.44675	0.00022013	492.7429115205212	62.17	1.641	62.267	61.952	63.593	0.096989					145	59	4	0	0	0	3.0646E-11	2	15299	15299;15347		193.29	132.9	1	6078100			30406	3570	17603	17604	37476;37477	37476					-0.02115091999246488
NFTNVAATF	9	Unmodified	_NFTNVAATF_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.7898254394531	2	492.742899	983.471246	0.50639	0.00024952	-0.33862	-0.00016685	0.16777	8.2669E-05	492.7425039537021	63.62	0.20589	63.716	63.591	63.797	0.095726					9	6	2	0	0	0	0.22143	1	15725	15725		24.991	8.0487	1	98734			30407	3570	17603	17604	37478	37478					-0.02115091999246488
NFTNVAATF	9	Unmodified	_NFTNVAATF_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.74322509765625	2	492.742899	983.471246	0.35514	0.00017499	0.11166	5.5021E-05	0.46681	0.00023002	492.7428930852154	62.223	1.503	62.215	61.905	63.408	-0.0085526					157	55	5	0	0	0	2.4752E-08	2	15318	15318;15360		179.17	120.49	1	5949300			30408	3570	17603	17604	37479;37480	37479					-0.02115091999246488
NFTNVAATF	9	Unmodified	_NFTNVAATF_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.7900695800781	2	492.742899	983.471246	0.47555	0.00023433	-3.5853	-0.0017667	-3.1098	-0.0015323	492.7407926815431	63.444	0.36565	63.435	63.325	63.691	-0.0085526					16	12	2	0	0	0	0.19686	1	15753	15753		31.268	8.1199	1	127610			30409	3570	17603	17604	37481	37481					-0.02115091999246488
NFVSAKTI	8	Unmodified	_NFVSAKTI_					0	0	0			REV__ENST00000371817.7_1_9:137734384-137734717:+|nuORF	REV__ENST00000371817.7_1_9:137734384-137734717:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.242431640625	2	440.25036	878.486168	0.16398	7.2191E-05	0.00049159	2.1642E-07	0.16447	7.2408E-05	440.25016043064585	23.64	0.90612	23.602	23.143	24.049	-0.038927					47	31	2	0	0	0	0.4419	1	3414	3414		8.5933	0	1	66726	+		30410	20406	17604	17605	37482	37482					0.04206399868758126
NFYPVQIPM	9	Unmodified	_NFYPVQIPM_					0	0	0		ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.81640625	2	554.778428	1107.5423	-0.061833	-3.4304E-05	-2.0854	-0.001157	-2.1473	-0.0011913	554.7770208999609	38.926	0.56625	38.926	38.649	39.215	0					32	19	2	0	0	0	0.24311	1	8080	8080		16.942	3.4344	1	309030			30411	6326	17605	17606	37483	37483					-0.007167152861029535
NFYPVQIPM	9	Unmodified	_NFYPVQIPM_					0	0	0		ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	554.778428	1107.5423	0.26961	0.00014957	-2.0124	-0.0011164	-1.7427	-0.00096684	554.7771548694003	38.811	0.62831	38.903	38.622	39.251	0.09267	-0.0089833	0.00022916	NaN	16.942	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268590			30412	6326	17605	17606							-0.007167152861029535
NFYPVQIPM	9	Unmodified	_NFYPVQIPM_					0	0	0		ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	ENSG00000169071|ENST00000375708|ROR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	554.778428	1107.5423	0.43902	0.00024356	-2.4621	-0.0013659	-2.023	-0.0011223	554.7769651222463	38.808	0.58634	38.908	38.598	39.184	0.099407	-0.0044144	-0.00026981	NaN	16.942	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340190			30413	6326	17605	17606							-0.007167152861029535
NFYWICIFF	9	Unmodified	_NFYWICIFF_					0	0	0		ENSG00000256394|ENST00000537611|ASIC5	ENSG00000256394|ENST00000537611|ASIC5	ENSG00000256394|ENST00000537611|ASIC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.7971801757812	2	626.79662	1251.57869	0.27374	0.00017158	0.66075	0.00041416	0.93449	0.00058574	626.7971458970858	27.185	0.60456	27.185	26.925	27.53	0					45	20	3	0	0	0	0.34536	1	4553	4553		2.0598	0.40713	1	190630			30414	8626	17606	17607	37484	37484					-0.03703838389401426
NFYWICIFF	9	Unmodified	_NFYWICIFF_					0	0	0		ENSG00000256394|ENST00000537611|ASIC5	ENSG00000256394|ENST00000537611|ASIC5	ENSG00000256394|ENST00000537611|ASIC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.7977294921875	2	626.79662	1251.57869	-0.010228	-6.4108E-06	1.2086	0.00075752	1.1983	0.00075111	626.7973630961801	26.792	0.4759	26.77	26.45	26.926	-0.021412					37	16	3	0	0	0	0.35512	1	4505	4505		0.6015	0.076735	1	169220			30415	8626	17606	17607	37485	37485					-0.03703838389401426
NFYWICIFF	9	Unmodified	_NFYWICIFF_					0	0	0		ENSG00000256394|ENST00000537611|ASIC5	ENSG00000256394|ENST00000537611|ASIC5	ENSG00000256394|ENST00000537611|ASIC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.7966918945312	2	626.79662	1251.57869	-0.11362	-7.1216E-05	1.086	0.00068068	0.97234	0.00060946	626.7974934370317	27.171	0.51131	27.149	26.926	27.437	-0.021412					40	17	3	0	0	0	0.34536	1	4558	4558		2.0598	0.21551	1	202610			30416	8626	17606	17607	37486	37486					-0.03703838389401426
NFYWICIFF	9	Unmodified	_NFYWICIFF_					0	0	0		ENSG00000256394|ENST00000537611|ASIC5	ENSG00000256394|ENST00000537611|ASIC5	ENSG00000256394|ENST00000537611|ASIC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.7969970703125	2	626.79662	1251.57869	0.13036	8.1708E-05	0.73503	0.00046071	0.86538	0.00054242	626.7971551644106	27.169	0.50973	27.157	26.928	27.438	-0.011562					37	17	3	0	0	0	0.34536	1	4557	4557		2.0598	0.40713	1	197360			30417	8626	17606	17607	37487	37487					-0.03703838389401426
NGDVCQDCIQM	11	Unmodified	_NGDVCQDCIQM_					0	0	0		ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP	ENSG00000197746|ENST00000394936|PSAP	ENSG00000197746|ENST00000394936|PSAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.2363891601562	2	613.235941	1224.45733	0.23432	0.00014369	0.54364	0.00033338	0.77797	0.00047708	613.2361338140929	70.027	0.69669	70.027	69.815	70.512	0					52	25	3	0	0	0	0.14098	2	17735	17735;17787		36.506	1.0535	1	832690			30418	7994	17607	17608	37488;37489	37488					-0.14592196876515118
NGDVCQDCIQM	11	Unmodified	_NGDVCQDCIQM_					0	0	0		ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP	ENSG00000197746|ENST00000394936|PSAP	ENSG00000197746|ENST00000394936|PSAP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	613.235941	1224.45733	0.2059	0.00012626	0.33836	0.0002075	0.54426	0.00033376	613.2361310263026	70.003	0.78091	70.069	69.826	70.607	0.066048	0.012591	-8.1887E-05	NaN	36.506	60	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	708690			30419	7994	17607	17608							-0.14592196876515118
NGDVCQDCIQM	11	Unmodified	_NGDVCQDCIQM_					0	0	0		ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP	ENSG00000197746|ENST00000394936|PSAP	ENSG00000197746|ENST00000394936|PSAP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	613.235941	1224.45733	0.25021	0.00015344	0.35134	0.00021545	0.60155	0.00036889	613.2361310918293	70.095	0.66476	70.073	69.804	70.469	-0.022087	0.016787	-6.5972E-05	NaN	36.506	55	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	778600			30420	7994	17607	17608							-0.14592196876515118
NGEADPNLLVM	11	Unmodified	_NGEADPNLLVM_					0	0	0			REV__ENSG00000152749|ENST00000376958|GPR180	REV__ENSG00000152749|ENST00000376958|GPR180	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.7705688476562	2	586.784438	1171.55432	0.40019	0.00023482	0.080073	4.6985E-05	0.48026	0.00028181	586.7850823508884	71.506	0.72507	71.506	71.292	72.017	0					45	25	3	0	0	0	0.36257	2	18194	18194;18206		16.149	2.2431	1	906720	+		30421	16593	17608	17609	37490;37491	37490					-0.024591433335672264
NGEADPNLLVM	11	Unmodified	_NGEADPNLLVM_					0	0	0			REV__ENSG00000152749|ENST00000376958|GPR180	REV__ENSG00000152749|ENST00000376958|GPR180	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.770751953125	2	586.784438	1171.55432	0.45167	0.00026503	-0.1656	-9.7169E-05	0.28608	0.00016786	586.7848088562415	71.583	0.69406	71.556	71.315	72.009	-0.027267					51	24	3	0	0	0	0.33189	1	18208	18208		19.362	0.10495	1	1104500	+		30422	16593	17608	17609	37492	37492					-0.024591433335672264
NGFMREREY	9	Unmodified	_NGFMREREY_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.8111572265625	2	601.274572	1200.53459	0.4612	0.00027731	0.099465	5.9806E-05	0.56066	0.00033711	601.2742672089372	66.995	0.31165	67.078	66.877	67.188	0.083824					23	10	3	0	0	0	0.25622	1	16741	16741		3.9444	0	1	146700			30423	4198	17609	17610	37493	37493					-0.05765474553618333
NGGQQLAECV	10	Unmodified	_NGGQQLAECV_					0	0	0			REV__ENSG00000100625|ENST00000216513|SIX4	REV__ENSG00000100625|ENST00000216513|SIX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.80609130859375	2	509.734748	1017.45494	0.27829	0.00014185	-1.0472	-0.00053382	-0.76895	-0.00039196	509.7340461580011	16.762	0.50091	16.7	16.468	16.969	-0.062534					20	17	2	0	0	0	0.31958	1	1397	1397		5.2969	0.96765	1	58281	+		30424	14216	17610	17611	37494	37494					-0.05308541227657315
NGHYISLVF	9	Unmodified	_NGHYISLVF_					0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.274658203125	2	525.274367	1048.53418	0.36829	0.00019346	0.07257	3.8119E-05	0.44086	0.00023157	525.2743030232684	69.723	0.7625	69.723	69.369	70.131	0					65	27	3	0	0	0	0.21447	1	17653	17653		21.537	4.4241	1	839890	+		30425	14361	17611	17612	37495	37495					0.011854737888143063
NGHYISLVF	9	Unmodified	_NGHYISLVF_					0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2747192382812	2	525.274367	1048.53418	0.36829	0.00019346	0.07257	3.8119E-05	0.44086	0.00023157	525.2743030232684	69.723	0.7625	69.723	69.369	70.131	0					65	27	3	0	0	0	0.23235	1	17604	17604		16.149	16.149	1	839890	+		30426	14361	17611	17612	37496	37496					0.011854737888143063
NGHYISLVF	9	Unmodified	_NGHYISLVF_					0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2744140625	2	525.274367	1048.53418	0.43485	0.00022842	0.14799	7.7734E-05	0.58284	0.00030615	525.2744060964002	69.703	0.78535	69.681	69.378	70.163	-0.022087					65	28	3	0	0	0	0.17277	1	17607	17607		27.629	4.8925	1	1001500	+		30427	14361	17611	17612	37497	37497					0.011854737888143063
NGHYISLVF	9	Unmodified	_NGHYISLVF_					0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.274658203125	2	525.274367	1048.53418	0.43485	0.00022842	0.14799	7.7734E-05	0.58284	0.00030615	525.2744060964002	69.703	0.78535	69.681	69.378	70.163	-0.022087					65	28	3	0	0	0	0.24289	1	17651	17651		18.146	18.146	1	1001500	+		30428	14361	17611	17612	37498	37498					0.011854737888143063
NGHYISLVF	9	Unmodified	_NGHYISLVF_					0	0	0			REV__nc|ENSG00000103249|P51798-2|CLCN7	REV__nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	525.274367	1048.53418	0.32586	0.00017116	0.15604	8.1965E-05	0.4819	0.00025313	525.2743675647321	69.632	0.70613	69.698	69.395	70.101	0.06604	-0.002364	2.2602E-05	NaN	27.629	57	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	929480	+		30429	14361	17611	17612							0.011854737888143063
NGIKVLLI	8	Unmodified	_NGIKVLLI_					0	0	0		ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF	ENSG00000119912|ENST00000265986|IDE	ENSG00000119912|ENST00000265986|IDE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.294677734375	2	435.294571	868.574589	0.33118	0.00014416	-0.25971	-0.00011305	0.071466	3.1109E-05	435.29433417458335	60.748	0.60865	60.748	60.495	61.103	0					50	21	4	0	0	0	0.029359	1	14854	14854		89.427	10.982	1	1556500			30430	2914	17612	17613	37499	37499					0.13504440179247013
NGIKVLLI	8	Unmodified	_NGIKVLLI_					0	0	0		ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF	ENSG00000119912|ENST00000265986|IDE	ENSG00000119912|ENST00000265986|IDE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2944641113281	2	435.294571	868.574589	0.36627	0.00015944	-0.41396	-0.00018019	-0.047684	-2.0757E-05	435.2942598893223	60.636	0.58779	60.733	60.477	61.065	0.096985					49	20	4	0	0	0	0.011432	2	14818	14818;14875		114.94	28.822	1	1586300			30431	2914	17612	17613	37500;37501	37500					0.13504440179247013
NGIKVLLI	8	Unmodified	_NGIKVLLI_					0	0	0		ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF	ENSG00000119912|ENST00000265986|IDE	ENSG00000119912|ENST00000265986|IDE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2945556640625	2	435.294571	868.574589	0.37684	0.00016404	-0.3176	-0.00013825	0.059238	2.5786E-05	435.2943155154672	60.739	0.48039	60.73	60.487	60.968	-0.0094566					42	17	3	0	0	0	0.020228	2	14845	14845;14892		101.72	31.006	1	1568200			30432	2914	17612	17613	37502;37503	37502					0.13504440179247013
NGKFKLQDYL	10	Unmodified	_NGKFKLQDYL_					0	0	0			REV__ENSG00000135108|ENST00000622495|FBXO21	REV__ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.2240295410156	3	409.224034	1224.65027	0.44783	0.00018326	-0.13858	-5.6712E-05	0.30924	0.00012655	409.22389823154924	47.837	1.1729	47.885	47.428	48.601	0.047523					119	43	4	0	0	0	0.35624	1	10876	10876		11.518	1.2026	1	8502900	+		30433	15722	17613	17614	37504	37504					0.046933725688631966
NGKFKLQDYL	10	Unmodified	_NGKFKLQDYL_					0	0	0			REV__ENSG00000135108|ENST00000622495|FBXO21	REV__ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.2240295410156	3	409.224034	1224.65027	0.28788	0.00011781	-0.018973	-7.7641E-06	0.26891	0.00011004	409.2239839035534	47.771	1.139	47.814	47.504	48.643	0.04332					118	42	4	0	0	0	0.35267	1	10881	10881		12.175	2.0242	1	11178000	+		30434	15722	17613	17614	37505	37505					0.046933725688631966
NGLIDVVITFI	11	Unmodified	_NGLIDVVITFI_					0	0	0			REV__ENSG00000168412|ENST00000307161|MTNR1A	REV__ENSG00000168412|ENST00000307161|MTNR1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.3513793945312	2	602.352814	1202.69108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.365	1	93.451	92.951	93.951	0.08667								0	0	0	0.37382	1	24862	24862		2.9952	0	1		+		30435	17457	17614	17615	37506	37506					0.09783713888464263
NGLREHLQT	9	Unmodified	_NGLREHLQT_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2830810546875	2	534.283254	1066.55196	0.091736	4.9013E-05	0.31892	0.00017039	0.41066	0.00021941	534.2828701897614	99.117	1.7874	99.117	98.405	100.19	0					553	222	3	0	0	0	0.31417	1	26469	26469		6.7232	0.51738	1	846820			30436	1795	17615	17616	37507	37507					0.021341890436588073
NGLREHLQT	9	Unmodified	_NGLREHLQT_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.283447265625	2	534.283254	1066.55196	0.11822	6.3161E-05	0.26094	0.00013941	0.37915	0.00020258	534.2828086271509	98.95	1.6655	99.001	98.473	100.14	0.050888					522	217	3	0	0	0	0.28674	1	26511	26511		10.824	1.4408	1	1120300			30437	1795	17615	17616	37508	37508					0.021341890436588073
NGLVFCTEIF	10	Unmodified	_NGLVFCTEIF_					0	0	0			REV__ENST00000474768.5_1_3:64785337-64852914:+|nuORF	REV__ENST00000474768.5_1_3:64785337-64852914:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2940673828125	2	571.781167	1141.54778	-0.11216	-6.413E-05	0.14071	8.0456E-05	0.028553	1.6326E-05	571.780915043718	12.636	0.1443	12.636	12.555	12.699	0					6	4	2	0	0	0	0.32132	1	181	181		1.4819	0.15237	1	11616	+		30438	21397	17616	17617	37509	37509					-0.01733036494283624
NGLWKSKWIF	10	Unmodified	_NGLWKSKWIF_					0	0	0		ENSG00000177938|ENST00000317658|CAPZA3	ENSG00000177938|ENST00000317658|CAPZA3	ENSG00000177938|ENST00000317658|CAPZA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.904296875	3	426.904636	1277.69208	-0.10312	-4.4022E-05	-0.14397	-6.1462E-05	-0.24709	-0.00010548	426.9045129574471	45.728	0.91763	45.788	45.448	46.365	0.059834					75	32	3	0	0	0	0.33327	1	10258	10258		15.739	15.739	1	1709000			30439	7025	17617	17618	37510	37510					0.064339730480242
NGPKSMTKR	9	Unmodified	_NGPKSMTKR_					0	0	0			REV__ENST00000480912.5_1_6:31861409-31864228:-|nuORF	REV__ENST00000480912.5_1_6:31861409-31864228:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3060607910156	2	509.776751	1017.53895	-0.036504	-1.8609E-05	1.9219	0.00097976	1.8854	0.00096115	509.7777804245657	12.183	0.084025	12.183	12.135	12.219	0					5	3	2	0	0	0	0.26031	1	44	44		3.5965	0	1	17837	+		30440	18935	17618	17619	37511	37511					0.030880346599360564
NGQLRSSR	8	Unmodified	_NGQLRSSR_					0	0	0		nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.24957275390625	2	459.249215	916.483876	0.21025	9.6557E-05	1.4322	0.00065774	1.6425	0.0007543	459.2497074027887	79.857	0.65831	79.828	79.544	80.202	-0.028931					41	23	2	0	0	0	0.34272	1	20729	20729		4.3292	0	1	358070			30441	3556	17619	17620	37512	37512					0.022293641836654388
NGQLRSSR	8	Unmodified	_NGQLRSSR_					0	0	0		nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	459.249215	916.483876	0.071116	3.266E-05	1.7371	0.00079777	1.8082	0.00083043	459.24981661005404	79.787	0.77029	79.787	79.524	80.294	0	-0.020415	0.00018374	NaN	4.3292	49	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389340			30442	3556	17619	17620							0.022293641836654388
NGQLRSSR	8	Unmodified	_NGQLRSSR_					0	0	0		nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	459.249215	916.483876	0.12843	5.8984E-05	1.5261	0.00070086	1.6545	0.00075984	459.24975964210944	79.746	0.77242	79.808	79.542	80.314	0.061409	0.00017442	-1.008E-05	NaN	4.3292	45	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352790			30443	3556	17619	17620							0.022293641836654388
NGQQYREK	8	Unmodified	_NGQQYREK_					0	0	0			REV__ENSG00000114446|ENST00000264538|IFT57	REV__ENSG00000114446|ENST00000264538|IFT57	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.739013671875	2	511.75433	1021.49411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.903	1	14.793	14.293	15.293	-0.10981								0	0	0	0.37277	1	867	867		4.3292	2.0265	1		+		30444	14834	17620	17621	37513	37513					-0.015780728817617273
NGRFGYRR	8	Unmodified	_NGRFGYRR_					0	0	0		ENSG00000275489|ENST00000614158|C17orf98	ENSG00000275489|ENST00000614158|C17orf98	ENSG00000275489|ENST00000614158|C17orf98	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7986450195312	2	513.273024	1024.5315	0.16481	8.4594E-05	-1.6651	-0.00085465	-1.5003	-0.00077006	513.2721272695945	24.848	0.70012	24.792	24.46	25.16	-0.055931					36	24	2	0	0	0	0.34247	1	3811	3811		8.5933	1.304	1	72972			30445	8719	17621	17622	37514	37514					0.020210631745158025
NGRVAVGGLAG	11	Unmodified	_NGRVAVGGLAG_					0	0	0			REV__ENST00000348831.8_1_21:46644409-46644610:+|nuORF	REV__ENST00000348831.8_1_21:46644409-46644610:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.78759765625	2	485.775065	969.535577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.936	1	19.821	19.321	20.321	-0.11592								0	0	0	0.37501	1	2387	2387		2.7352	0.15772	1		+		30446	20160	17622	17623	37515	37515					0.04959107877573388
NGRVPFLKP	9	Unmodified	_NGRVPFLKP_					0	0	0			REV__ENSG00000176896|ENST00000696128|TCEANC	REV__ENSG00000176896|ENST00000696128|TCEANC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.77783203125	2	514.306001	1026.59745	0.29898	0.00015377	0.60646	0.00031191	0.90544	0.00046567	514.3062794946344	17.245	0.41518	17.245	17.122	17.537	0					25	14	2	0	0	0	0.25988	1	1580	1580		3.9444	0	1	24657	+		30447	17956	17623	17624	37516	37516					0.08521459296730427
NGSFDLHL	8	Unmodified	_NGSFDLHL_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-2|NLRC5	REV__nc|ENSG00000140853|Q86WI3-2|NLRC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.72210693359375	2	451.721967	901.429381	0.27912	0.00012608	-0.30612	-0.00013828	-0.027003	-1.2198E-05	451.72177807780184	58.639	0.39573	58.639	58.468	58.864	0					22	12	2	0	0	0	0.33441	1	14227	14227		26.884	0	1	350920	+		30448	16055	17624	17625	37517	37517					-0.02527647687747958
NGSFDLHL	8	Unmodified	_NGSFDLHL_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-2|NLRC5	REV__nc|ENSG00000140853|Q86WI3-2|NLRC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.72186279296875	2	451.721967	901.429381	0.22583	0.00010201	0.013802	6.2347E-06	0.23963	0.00010825	451.7218778152754	58.461	0.47824	58.552	58.314	58.792	0.091305					31	16	3	0	0	0	0.3671	1	14177	14177		23.148	0	1	372530	+		30449	16055	17624	17625	37518	37518					-0.02527647687747958
NGSFDLHL	8	Unmodified	_NGSFDLHL_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-2|NLRC5	REV__nc|ENSG00000140853|Q86WI3-2|NLRC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7218322753906	2	451.721967	901.429381	0.35342	0.00015965	-2.331	-0.001053	-1.9776	-0.00089332	451.7208273090942	58.689	0.77839	58.675	58.47	59.248	-0.014267					43	27	2	0	0	0	0.20518	1	14242	14242		42.095	0	1	370710	+		30450	16055	17624	17625	37519	37519					-0.02527647687747958
NGTQERPVL	9	Unmodified	_NGTQERPVL_					0	0	0		ENSG00000087116|ENST00000251582|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.27197265625	2	507.272355	1012.53016	-0.021617	-1.0965E-05	-0.32297	-0.00016383	-0.34458	-0.0001748	507.272129021245	27.63	0.53769	27.608	27.411	27.949	-0.021412					33	18	2	0	0	0	0.29638	1	4762	4762		9.3831	0.78985	1	142600			30451	1297	17625	17626	37520	37520					0.024393842950985345
NGTQERPVL	9	Unmodified	_NGTQERPVL_					0	0	0		ENSG00000087116|ENST00000251582|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.272355	1012.53016	0.060112	3.0493E-05	-0.55137	-0.0002797	-0.49126	-0.0002492	507.27228386227665	27.649	0.62773	27.649	27.38	28.008	0	0.015358	-0.00027379	NaN	9.3831	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137060			30452	1297	17625	17626							0.024393842950985345
NGTQERPVL	9	Unmodified	_NGTQERPVL_					0	0	0		ENSG00000087116|ENST00000251582|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.272355	1012.53016	-0.066179	-3.3571E-05	0.12921	6.5543E-05	0.063028	3.1972E-05	507.2724421136746	27.656	0.4861	27.644	27.407	27.893	-0.01156	0.010264	0.00041669	NaN	9.3831	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147050			30453	1297	17625	17626							0.024393842950985345
NGVQLVRY	8	Unmodified	_NGVQLVRY_					0	0	0			REV__nc|ENSG00000005844|P20701-3|ITGAL	REV__nc|ENSG00000005844|P20701-3|ITGAL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.2116394042969	2	474.766709	947.518865	-0.099349	-4.7167E-05	4.0597	0.0019274	3.9604	0.0018803	474.7685634996533	13.323	0.23701	13.224	13.069	13.306	-0.099291					11	7	2	0	0	0	0.34408	1	398	398		0.6015	0.14316	1	27655	+		30454	13347	17626	17627	37521	37521					0.04300606991625955
NGYFEDSSYYK	11	Unmodified	_NGYFEDSSYYK_					0	0	0		nc|ENSG00000088836|Q8NBS3-5|SLC4A11;ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.1944580078125	3	458.19458	1371.56191	-0.28135	-0.00012891	-0.65952	-0.00030219	-0.94086	-0.0004311	458.1946623668566	28.099	0.93792	28.099	27.732	28.67	0					107	32	5	0	0	0	0.45202	1	4860	4860		4.4062	0	1	1384900			30455	1334	17627	17628	37522	37522					-0.10900712532270518
NGYLYLELDS	10	Unmodified	_NGYLYLELDS_					0	0	0			REV__ENST00000437184.5_1_2:33683166-33740095:+|nuORF	REV__ENST00000437184.5_1_2:33683166-33740095:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.7854614257812	2	593.784961	1185.55537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.175	1	83.175	82.675	83.675	0								0	0	0	0.37739	1	21748	21748		3.2813	0	1		+		30456	20717	17628	17629	37523	37523					-0.029986056930056293
NGYLYLELDS	10	Unmodified	_NGYLYLELDS_					0	0	0			REV__ENST00000437184.5_1_2:33683166-33740095:+|nuORF	REV__ENST00000437184.5_1_2:33683166-33740095:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.78564453125	2	593.784961	1185.55537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.325	1	83.325	82.825	83.825	0								0	0	0	0.37739	1	21794	21794		3.2813	0	1		+		30457	20717	17628	17629	37524	37524					-0.029986056930056293
NGYLYLELDS	10	Unmodified	_NGYLYLELDS_					0	0	0			REV__ENST00000437184.5_1_2:33683166-33740095:+|nuORF	REV__ENST00000437184.5_1_2:33683166-33740095:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7859497070312	2	593.784961	1185.55537	0.40667	0.00024147	0.79203	0.00047029	1.1987	0.00071177	593.785392212185	80.333	1.2212	80.306	79.646	80.868	-0.026817					63	43	3	0	0	0	0.40106	1	20838	20838		3.2813	0.28607	1	223590	+		30458	20717	17628	17629	37525	37525					-0.029986056930056293
NGYLYLELDS	10	Unmodified	_NGYLYLELDS_					0	0	0			REV__ENST00000437184.5_1_2:33683166-33740095:+|nuORF	REV__ENST00000437184.5_1_2:33683166-33740095:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7852783203125	2	593.784961	1185.55537	0.50009	0.00029694	0.13732	8.1539E-05	0.63741	0.00037848	593.7852071606184	82.233	2.4344	82.209	81.395	83.829	-0.02404					307	100	6	0	0	0	0.40106	2	21356	21356;21410		3.2813	0.97858	1	964350	+		30459	20717	17628	17629	37526;37527	37526					-0.029986056930056293
NGYTPLHI	8	Unmodified	_NGYTPLHI_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.V1315Cfs*8|1|0.35|ENSG00000151150|chr10:60084733-60084734|-/A|frameshift_variant;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;ANK3|p.E1076Afs*7|1|0.3|ENSG00000151150|chr10:60106005-60106006|TT/-|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant;nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-11|ANK1	ENSG00000151150|ENST00000280772|ANK3;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000029534|P16157-14|ANK1	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.74029541015625	2	457.74016	913.465767	0.35791	0.00016383	0.10209	4.673E-05	0.46	0.00021056	457.74009518025116	45.922	0.5799	45.922	45.666	46.246	0					45	20	3	0	0	0	0.014355	2	10301	10301;10359		109.63	62.708	1	1000900			30460	4644;4941;547	17629	17630	37528;37529	37528					0.005572292089482289
NGYTPLHI	8	Unmodified	_NGYTPLHI_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.V1315Cfs*8|1|0.35|ENSG00000151150|chr10:60084733-60084734|-/A|frameshift_variant;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;ANK3|p.E1076Afs*7|1|0.3|ENSG00000151150|chr10:60106005-60106006|TT/-|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant;nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-11|ANK1	ENSG00000151150|ENST00000280772|ANK3;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000029534|P16157-14|ANK1	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.740234375	2	457.74016	913.465767	0.091832	4.2035E-05	0.37591	0.00017207	0.46774	0.0002141	457.74020081202264	45.745	0.61425	45.805	45.536	46.15	0.059837					47	21	3	0	0	0	0.0015052	2	10224	10224;10277		137.59	81.044	1	1104300			30461	4644;4941;547	17629	17630	37530;37531	37530					0.005572292089482289
NGYTPLHI	8	Unmodified	_NGYTPLHI_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.V1315Cfs*8|1|0.35|ENSG00000151150|chr10:60084733-60084734|-/A|frameshift_variant;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;ANK3|p.E1076Afs*7|1|0.3|ENSG00000151150|chr10:60106005-60106006|TT/-|frameshift_variant;ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant;nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-11|ANK1	ENSG00000151150|ENST00000280772|ANK3;ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000029534|P16157-14|ANK1	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7403259277344	2	457.74016	913.465767	0.35825	0.00016399	0.18298	8.3756E-05	0.54123	0.00024774	457.74011740548934	45.738	0.6868	45.803	45.487	46.174	0.065048					52	24	3	0	0	0	0.0072474	2	10208	10208;10260		123.1	76.175	1	1134600			30462	4644;4941;547	17629	17630	37532;37533	37532					0.005572292089482289
NHDEFPYQ	8	Unmodified	_NHDEFPYQ_					0	0	0			REV__nc|ENSG00000171862|P60484-2|PTEN	REV__nc|ENSG00000171862|P60484-2|PTEN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2362060546875	2	525.219788	1048.42502	0.31591	0.00016592	1.8452	0.00096913	2.1611	0.0011351	525.220685774905	23.354	0.38193	23.266	23.077	23.459	-0.087608					21	13	2	0	0	0	0.34167	1	3405	3405		11.64	2.2929	1	61024	+		30463	23083	17630	17631	37534	37534					-0.09725156901322407
NHDEFPYQ	8	Unmodified	_NHDEFPYQ_					0	0	0			REV__nc|ENSG00000171862|P60484-2|PTEN	REV__nc|ENSG00000171862|P60484-2|PTEN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2357788085938	2	525.219788	1048.42502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.327	1	23.282	22.782	23.782	-0.044867								0	0	0	0.35663	1	3412	3412		11.64	2.2929	1		+		30464	23083	17630	17631	37535	37535					-0.09725156901322407
NHFSSFEL	8	Unmodified	_NHFSSFEL_					0	0	0			REV__HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|18|1|sense	REV__HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|18|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.579833984375	2	490.727249	979.439946	-0.032881	-1.6136E-05	1.0265	0.00050372	0.99359	0.00048758	490.72790853802957	13.73	0.22463	13.625	13.513	13.738	-0.10466					21	7	4	0	0	0	0.33245	1	515	515		13.508	0	1	50936	+		30465	22759	17631	17632	37536	37536					-0.050596650333318394
NHGRDHHRDD	10	Unmodified	_NHGRDHHRDD_					0	0	0			REV__ENST00000373299.4_1_9:130413924-130420672:+|nuORF	REV__ENST00000373299.4_1_9:130413924-130420672:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.1843566894531	3	420.185524	1257.53474	0.043192	1.8148E-05	-2.0545	-0.00086329	-2.0113	-0.00084514	420.184372842017	46.611	0.52481	46.666	46.383	46.908	0.054371					48	18	4	0	0	0	0.36015	1	10515	10515		6.6235	0	1	879230	+		30466	20434	17632	17633	37537	37537					-0.08372338509457222
NHGRDHHRDD	10	Unmodified	_NHGRDHHRDD_					0	0	0			REV__ENST00000373299.4_1_9:130413924-130420672:+|nuORF	REV__ENST00000373299.4_1_9:130413924-130420672:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.5833435058594	3	420.185524	1257.53474	0.043192	1.8148E-05	-2.0545	-0.00086329	-2.0113	-0.00084514	420.184372842017	46.611	0.52481	46.666	46.383	46.908	0.054371					48	18	4	0	0	0	0.31825	1	10540	10540		6.2344	1.1868	1	879230	+		30467	20434	17632	17633	37538	37538					-0.08372338509457222
NHHFAGIIL	9	Unmodified	_NHHFAGIIL_					0	0	0		nc|ENSG00000188992|Q6XZB0-6|LIPI	nc|ENSG00000188992|Q6XZB0-6|LIPI	nc|ENSG00000188992|Q6XZB0-6|LIPI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.253173828125	2	511.282526	1020.5505	0.33711	0.00017236	-1.5859	-0.00081083	-1.2488	-0.00063847	511.28151544915085	72.246	0.41888	72.219	72.038	72.457	-0.027267					23	14	2	0	0	0	0.23783	1	18382	18382		18.135	2.2878	1	83506			30468	12888	17633	17634	37539	37539					0.04104599745562609
NHHFAGIIL	9	Unmodified	_NHHFAGIIL_					0	0	0		nc|ENSG00000188992|Q6XZB0-6|LIPI	nc|ENSG00000188992|Q6XZB0-6|LIPI	nc|ENSG00000188992|Q6XZB0-6|LIPI	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	511.282526	1020.5505	0.39849	0.00020374	-2.0952	-0.0010712	-1.6967	-0.00086749	511.281395856629	72.21	0.57077	72.21	71.989	72.56	0	0.01514	-0.00017842	NaN	44.407	25	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115000			30469	12888	17633	17634							0.04104599745562609
NHIESIMPR	9	Unmodified	_NHIESIMPR_					0	0	0		ENSG00000131951|ENST00000570145|LRRC9;nc|ENSG00000131951|Q6ZRR7|LRRC9	ENSG00000131951|ENST00000570145|LRRC9	ENSG00000131951|ENST00000570145|LRRC9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7821044921875	2	548.782033	1095.54951	0.061607	3.3809E-05	0.64786	0.00035554	0.70947	0.00038935	548.7824883446629	12.511	0.21468	12.511	12.397	12.612	0					9	6	2	0	0	0	0.34809	1	164	164		1.6526	0.96225	1	45436			30470	3599	17634	17635	37540	37540					0.005560173143521752
NHIFFTIS	8	Unmodified	_NHIFFTIS_					0	0	0		nc|ENSG00000104361|Q9H841-1|NIPAL2;ENSG00000104361|ENST00000430223|NIPAL2;ENST00000521820.1_1_8:99208168-99217379:-|nuORF	nc|ENSG00000104361|Q9H841-1|NIPAL2	nc|ENSG00000104361|Q9H841-1|NIPAL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.7398376464844	2	489.75581	977.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.851	1	65.84	65.34	66.34	-0.011337								0	0	0	0.34229	1	16438	16438		18.135	8.7875	1				30471	1884	17635	17636	37541	37541					0.007418022430556448
NHIQTIHR	8	Unmodified	_NHIQTIHR_					0	0	0		ENSG00000198795|ENST00000361524|ZNF521	ENSG00000198795|ENST00000361524|ZNF521	ENSG00000198795|ENST00000361524|ZNF521	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2828369140625	2	509.780682	1017.54681	0.3439	0.00017531	1.4331	0.00073056	1.777	0.00090587	510.28212022338414	88.196	1.7691	88.285	87.816	89.585	0.089195					111	87	2	0	0	0	0.44389	1	23593	23593		7.9102	0	1	900310			30472	8127	17636	17637	37542	37542					0.03873929971712187
NHIRKHMIL	9	Unmodified	_NHIRKHMIL_					0	0	0			REV__ENSG00000270011|ENST00000541595|ZNF559-ZNF177	REV__ENSG00000270011|ENST00000541595|ZNF559-ZNF177	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3339233398438	2	581.33731	1160.66007	0.14914	8.6698E-05	-0.29521	-0.00017162	-0.14608	-8.492E-05	581.3370437437627	23.802	1.733	23.802	23.11	24.843	0					134	59	4	0	0	0	0.31417	1	3425	3425		6.7232	1.4263	1	1463700	+		30473	18561	17637	17638	37543	37543					0.08616282093248628
NHIVQNTLS	9	Unmodified	_NHIVQNTLS_					0	0	0			REV__ZNF528|p.Y241Sfs*100|1|0.18|ENSG00000167555|chr19:52415574-52415574|A/-|frameshift_variant	REV__ZNF528|p.Y241Sfs*100|1|0.18|ENSG00000167555|chr19:52415574-52415574|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.771240234375	2	513.272355	1024.53016	0.22686	0.00011644	0.2031	0.00010425	0.42996	0.00022069	513.2722716267995	76.866	1.1873	76.92	76.19	77.377	0.054367					82	41	3	0	0	0	0.2322	1	19773	19773		14.838	14.838	1	1758300	+		30474	17392	17638	17639	37544	37544					0.01887384295105221
NHLATEEETA	10	Unmodified	_NHLATEEETA_					0	0	0			REV__nc|ENSG00000133657|Q9H7F0|ATP13A3	REV__nc|ENSG00000133657|Q9H7F0|ATP13A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3013305664062	2	557.754192	1113.49383	-0.17586	-9.8089E-05	-1.7616	-0.00098256	-1.9375	-0.0010806	557.752932951192	25.204	0.45346	25.172	24.953	25.406	-0.03141					25	15	2	0	0	0	0.31629	1	4033	4033		10.074	2.1638	1	75240	+		30475	15630	17639	17640	37545	37545					-0.058375373922672225
NHLFNKENLP	10	Unmodified	_NHLFNKENLP_					0	0	0		nc|ENSG00000276293|P78356-2|PIP4K2B;ENSG00000276293|ENST00000619039|PIP4K2B	nc|ENSG00000276293|P78356-2|PIP4K2B	nc|ENSG00000276293|P78356-2|PIP4K2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.55560302734375	3	409.21565	1224.62512	-0.14806	-6.0588E-05	-0.46608	-0.00019073	-0.61414	-0.00025132	409.21564705697403	17.861	0.64087	17.861	17.628	18.269	0					34	21	3	0	0	0	0.32082	1	1735	1735		3.3196	1.2336	1	85373			30476	8727	17640	17641	37546	37546					0.021793177662630114
NHLFNKENLP	10	Unmodified	_NHLFNKENLP_					0	0	0		nc|ENSG00000276293|P78356-2|PIP4K2B;ENSG00000276293|ENST00000619039|PIP4K2B	nc|ENSG00000276293|P78356-2|PIP4K2B	nc|ENSG00000276293|P78356-2|PIP4K2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	409.21565	1224.62512	-0.11929	-4.8814E-05	-0.38923	-0.00015928	-0.50852	-0.00020809	409.2154855876941	18.083	0.69321	17.966	17.694	18.387	-0.11739	0.032913	6.7368E-05	NaN	3.3196	40	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101250			30477	8727	17640	17641							0.021793177662630114
NHLIDQAAL	9	Unmodified	_NHLIDQAAL_					0	0	0			REV__nc|ENSG00000170113|Q7RTP0-2|NIPA1	REV__nc|ENSG00000170113|Q7RTP0-2|NIPA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2538146972656	2	497.769448	993.524344	0.17316	8.6193E-05	-0.13533	-6.7365E-05	0.037825	1.8828E-05	497.7692770615004	15.733	0.52234	15.623	15.23	15.753	-0.10981					30	17	3	0	0	0	0.26031	1	1072	1072		3.5965	0.31518	1	33209	+		30478	17562	17641	17642	37547	37547					0.027322857834292336
NHLLNFPFI	9	Unmodified	_NHLLNFPFI_					0	0	0			REV__ENST00000430430.5_1_8:81432268-81432361:+|nuORF	REV__ENST00000430430.5_1_8:81432268-81432361:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7926025390625	2	557.805834	1113.59712	0.29254	0.00016318	0.27982	0.00015609	0.57236	0.00031927	557.8056726767735	69.043	1.2872	69.043	68.736	70.023	0					108	46	4	0	0	0	0.21303	1	17548	17548		21.747	0	1	1987600	+		30479	20945	17642	17643	37548	37548					0.044860395768409944
NHNWNTHG	8	Unmodified	_NHNWNTHG_					0	0	0		nc|ENSG00000164744|Q8TAQ9-2|SUN3;nc|ENSG00000164744|Q8TAQ9-3|SUN3;ENSG00000164744|ENST00000297325|SUN3	nc|ENSG00000164744|Q8TAQ9-2|SUN3	nc|ENSG00000164744|Q8TAQ9-2|SUN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.5796203613281	2	490.210089	978.405626	-0.0016112	-7.8982E-07	0.2189	0.00010731	0.21729	0.00010652	490.21024216302345	13.8	0.1586	13.8	13.714	13.872	0					8	5	2	0	0	0	0.344	1	521	521		2.5775	0	1	14897			30480	12808	17643	17644	37549	37549					-0.0844406840155898
NHPKVDRH	8	Unmodified	_NHPKVDRH_					0	0	0			REV__ENSG00000070770|ENST00000262506|CSNK2A2;REV__ENSG00000254598|ENST00000528848|CSNK2A3	REV__ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.3212585449219	2	501.765032	1001.51551	0.26868	0.00013481	-0.85714	-0.00043008	-0.58847	-0.00029527	501.76473248023046	16.368	0.52318	16.305	16.094	16.617	-0.062534					28	17	2	0	0	0	0.34353	1	1371	1371		4.756	0.42677	1	50618	+		30481	13736;14259	17644	17645	37550	37550					0.014813569376087798
NHQCCRTLF	9	Carbamidomethyl (C)	_NHQC(Carbamidomethyl (C))CRTLF_	NHQC(0.5)C(0.5)RTLF		NHQC(0)C(0)RTLF		0	1	0		nc|ENSG00000121964|Q4AE62-5|GTDC1	nc|ENSG00000121964|Q4AE62-5|GTDC1	nc|ENSG00000121964|Q4AE62-5|GTDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.7655639648438	2	589.763317	1177.51208	0.71607	0.00042231	0.40301	0.00023768	1.1191	0.00065999	589.7647747239771	74.703	3.7768	74.703	74.343	78.12	0					396	137	7	0	0	0	0.017871	5	19189	19189;19197;19231;19274;19316		67.344	21.323	2	99528000			30482	12681	17645	17646	37551;37552;37553;37554;37555	37551	19;20				-0.06957397222936379
NHQCCRTLF	9	Carbamidomethyl (C)	_NHQC(Carbamidomethyl (C))CRTLF_	NHQC(0.5)C(0.5)RTLF		NHQC(0)C(0)RTLF		0	1	0		nc|ENSG00000121964|Q4AE62-5|GTDC1	nc|ENSG00000121964|Q4AE62-5|GTDC1	nc|ENSG00000121964|Q4AE62-5|GTDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.7655639648438	2	589.763317	1177.51208	0.36043	0.00021257	0.77535	0.00045727	1.1358	0.00066984	589.7650341629503	74.704	4.5976	74.756	74.379	78.977	0.052361					405	167	7	0	0	0	0.017871	6	19153	19066;19153;19192;19287;19485;19579		67.344	16.04	2	102200000			30483	12681	17645	17646	37556;37557;37558;37559;37560;37561	37557	19;20				-0.06957397222936379
NHQCCRTLF	9	Carbamidomethyl (C)	_NHQC(Carbamidomethyl (C))CRTLF_	NHQC(0.5)C(0.5)RTLF		NHQC(0)C(0)RTLF		0	1	0		nc|ENSG00000121964|Q4AE62-5|GTDC1	nc|ENSG00000121964|Q4AE62-5|GTDC1	nc|ENSG00000121964|Q4AE62-5|GTDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.764404296875	2	589.763317	1177.51208	0.63131	0.00037232	0.42003	0.00024772	1.0513	0.00062004	589.7648086550932	74.787	4.6239	74.755	74.357	78.981	-0.031479					448	172	7	0	0	0	0.017871	6	19138	19090;19138;19183;19233;19321;19563		67.344	15.076	2	101670000			30484	12681	17645	17646	37562;37563;37564;37565;37566;37567	37563	19;20				-0.06957397222936379
NHQEFSDYD	9	Unmodified	_NHQEFSDYD_					0	0	0		MAP3K2|p.S505Afs*14|1|0.41|ENSG00000169967|chr2:127308707-127308707|G/-|frameshift_variant;ENSG00000169967|ENST00000682094|MAP3K2	MAP3K2|p.S505Afs*14|1|0.41|ENSG00000169967|chr2:127308707-127308707|G/-|frameshift_variant	MAP3K2|p.S505Afs*14|1|0.41|ENSG00000169967|chr2:127308707-127308707|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.8140869140625	2	577.722892	1153.43123	0.514	0.00029695	1.0833	0.00062583	1.5973	0.00092279	577.7232434549458	75.215	0.33189	75.184	75.059	75.391	-0.031487					14	12	2	0	0	0	0.25988	1	19343	19343		3.9444	0.66309	1	76630			30485	6407	17646	17647	37568	37568					-0.13934683460456654
NHTSQEIKS	9	Unmodified	_NHTSQEIKS_					0	0	0		nc|ENSG00000167604|Q8NI38|NFKBID;ENSG00000167604|ENST00000606253|NFKBID	nc|ENSG00000167604|Q8NI38|NFKBID	nc|ENSG00000167604|Q8NI38|NFKBID	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2593383789062	2	522.259445	1042.50434	0.36509	0.00019067	-0.64415	-0.00033642	-0.27907	-0.00014575	522.2590485307187	24.124	1.0135	24.124	23.829	24.843	0					49	34	2	0	0	0	0.20626	1	3673	3673		22.736	1.1993	1	1349600			30486	6189	17647	17648	37569	37569					-0.015215099471788562
NHVQKVRIPS	10	Unmodified	_NHVQKVRIPS_					0	0	0		ENST00000539683.2_1_16:31129164-31131922:+|nuORF	ENST00000539683.2_1_16:31129164-31131922:+|nuORF	ENST00000539683.2_1_16:31129164-31131922:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3447875976562	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.07	1	115.07	114.57	115.57	0								0	0	0	0.38187	1	29831	29831		1.3295	0.80477	1				30487	11711	17648	17649	37570	37570					0.09147016757151505
NIADPELGTLF	11	Unmodified	_NIADPELGTLF_					0	0	0			REV__KMT2B|p.D1819Mfs*70|1|0.11|ENSG00000272333|chr19:35731923-35731941|AGGACCCCCCACTGGACAC/-|frameshift_variant	REV__KMT2B|p.D1819Mfs*70|1|0.11|ENSG00000272333|chr19:35731923-35731941|AGGACCCCCCACTGGACAC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.31396484375	2	595.308603	1188.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.051	1	85.051	84.551	85.551	0								0	0	0	0.36517	1	22323	22323		4.897	0.95262	1		+		30488	19315	17649	17650	37571	37571					0.01589673577996109
NIAFETELA	9	Unmodified	_NIAFETELA_					0	0	0		nc|ENSG00000164049|Q6X9E4-2|FBXW12;nc|ENSG00000164049|Q6X9E4-3|FBXW12;ENSG00000164049|ENST00000296438|FBXW12;ENST00000477542.5_1_3:48415047-48423401:+|nuORF	nc|ENSG00000164049|Q6X9E4-2|FBXW12	nc|ENSG00000164049|Q6X9E4-2|FBXW12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.3482666015625	2	504.25584	1006.49713	0.38627	0.00019478	0.31023	0.00015644	0.6965	0.00035122	504.2561504257071	30.436	0.3658	30.436	30.282	30.648	0					23	12	3	0	0	0	0.25622	1	5614	5614		7.2892	0.93513	1	113510			30489	5773	17650	17651	37572	37572					-0.005862425476152566
NIAKTIFGR	9	Unmodified	_NIAKTIFGR_					0	0	0			REV__ENSG00000172179|ENST00000306482|PRL	REV__ENSG00000172179|ENST00000306482|PRL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2668762207031	2	510.303458	1018.59236	0.028525	1.4557E-05	4.4684	0.0022802	4.4969	0.0022948	510.8080789861833	40.961	0.35207	41.058	40.881	41.233	0.096626					20	12	2	0	0	0	0.2322	1	8795	8795		20.454	2.3186	1	178450	+		30490	17699	17651	17652	37573	37573					0.08381155434096854
NICRDDNF	8	Unmodified	_NICRDDNF_					0	0	0			REV__nc|ENSG00000159593|Q13564-3|NAE1	REV__nc|ENSG00000159593|Q13564-3|NAE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3160095214844	2	498.713816	995.413079	0.41482	0.00020687	0.23153	0.00011547	0.64635	0.00032234	498.7134393615949	62.291	0.43437	62.388	62.2	62.635	0.096989					23	15	2	0	0	0	0.34185	1	15351	15351		10.183	0	1	78972	+		30491	16860	17652	17653	37574	37574					-0.08481096916170827
NIDRALGF	8	Unmodified	_NIDRALGF_					0	0	0			REV__ENST00000604236.5_1_10:123239373-123278228:-|nuORF	REV__ENST00000604236.5_1_10:123239373-123278228:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.7660827636719	2	453.245609	904.476666	0.060017	2.7202E-05	-0.82612	-0.00037444	-0.7661	-0.00034723	453.2453273193795	38.869	0.82458	38.962	38.81	39.635	0.09267					36	29	2	0	0	0	0.32435	1	8220	8220		16.942	0	1	160570	+		30492	13681	17653	17654	37575	37575					0.020606315832424116
NIDSAKECVTF	11	Unmodified	_NIDSAKECVTF_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.7896728515625	2	613.789721	1225.56489	0.36923	0.00022663	-0.27365	-0.00016797	0.095574	5.8662E-05	613.7893820036737	56.631	1.0322	56.631	56.344	57.376	0					105	38	4	0	0	0	0.28258	1	13590	13590		23.79	1.0535	1	2303500			30493	4555	17654	17655	37576	37576					-0.03887160679119006
NIDSAKECVTF	11	Unmodified	_NIDSAKECVTF_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	613.7899169921875	2	613.789721	1225.56489	0.58953	0.00036185	-0.53896	-0.00033081	0.050575	3.1043E-05	613.7892840100129	56.848	0.98456	56.829	56.568	57.553	-0.019077					84	35	3	0	0	0	0.21521	1	13664	13664		29.841	4.8496	1	2641600			30494	4555	17654	17655	37577	37577					-0.03887160679119006
NIESLAHAL	9	Unmodified	_NIESLAHAL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.646728515625	2	484.263999	966.513445	0.20274	9.818E-05	0.71846	0.00034792	0.9212	0.0004461	484.26434861505226	43.417	0.47629	43.417	43.18	43.656	0					28	17	2	0	0	0	0.24688	1	9540	9540		14.838	2.5976	1	326830			30495	2508	17655	17656	37578	37578					0.028848834091377284
NIFLLFICKK	10	Unmodified	_NIFLLFICKK_					0	0	0			REV__MLH1|p.I501Nfs*10|1|0.49|ENSG00000076242|chr3:37028873-37028874|-/TAACCTCA|frameshift_variant	REV__MLH1|p.I501Nfs*10|1|0.49|ENSG00000076242|chr3:37028873-37028874|-/TAACCTCA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8690185546875	2	619.87012	1237.72569	0.24326	0.00015079	-0.21535	-0.00013349	0.027915	1.7303E-05	620.3723622558309	96.341	0.93677	96.338	95.853	96.789	-0.0038147					121	90	2	0	0	0	0.41085	1	25739	25739		1.4819	0	1	258000	+		30496	13826	17656	17657	37579	37579					0.11633258495567134
NIFPEDPKV	9	Unmodified	_NIFPEDPKV_					0	0	0		ENST00000522709.5_1_8:132916400-132952828:+|nuORF	ENST00000522709.5_1_8:132916400-132952828:+|nuORF	ENST00000522709.5_1_8:132916400-132952828:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2989501953125	2	529.779482	1057.54441	0.39179	0.00020756	0.33387	0.00017688	0.72565	0.00038444	529.7797952643648	24.056	0.9006	24.056	23.616	24.517	0					67	30	3	0	0	0	0.24848	1	3593	3593		9.3831	0	1	348980			30497	11503	17657	17658	37580	37580					0.017940367233904908
NIGLLFLFEI	10	Unmodified	_NIGLLFLFEI_					0	0	0			REV__ENSG00000143324|ENST00000367590|XPR1	REV__ENSG00000143324|ENST00000367590|XPR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3433227539062	2	589.844625	1177.6747	0.5726	0.00033775	0.16793	9.9055E-05	0.74054	0.0004368	589.84477982113	86.424	0.44958	86.424	86.2	86.649	0					48	18	3	0	0	0	0.31847	1	22795	22795		6.7232	0.51738	1	616370	+		30498	16162	17658	17659	37581	37581					0.09296632722384857
NIHPFIETL	9	Unmodified	_NIHPFIETL_					0	0	0		ENST00000467079.1_1_7:87035597-87037514:-|nuORF;nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4	ENST00000467079.1_1_7:87035597-87037514:-|nuORF	ENST00000467079.1_1_7:87035597-87037514:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2752075195312	2	542.295299	1082.57605	0.14293	7.7509E-05	0.14644	7.9412E-05	0.28936	0.00015692	542.295514237968	13.503	0.56639	13.503	13.336	13.902	0					42	19	4	0	0	0	0.25622	1	469	469		7.2892	0	1	340850			30499	337	17659	17660	37582	37582					0.038060294773458736
NIHPFIETL	9	Unmodified	_NIHPFIETL_					0	0	0		ENST00000467079.1_1_7:87035597-87037514:-|nuORF;nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4	ENST00000467079.1_1_7:87035597-87037514:-|nuORF	ENST00000467079.1_1_7:87035597-87037514:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2753295898438	2	542.295299	1082.57605	0.163	8.8394E-05	0.058203	3.1563E-05	0.2212	0.00011996	542.2954229502792	13.571	0.66283	13.472	13.276	13.938	-0.099291					52	23	4	0	0	0	0.25202	1	488	488		10.824	3.5347	1	342650			30500	337	17659	17660	37583	37583					0.038060294773458736
NIIAKKIVL	9	Unmodified	_NIIAKKIVL_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.349853515625	2	506.349877	1010.6852	0.14512	7.3482E-05	-0.12564	-6.3619E-05	0.019479	9.8632E-06	506.3497455359927	41.27	0.52038	41.27	41.01	41.531	0					57	18	4	0	0	0	0.0022761	2	8897	8850;8897		108	19.093	1	3529600			30501	2673	17660	17661	37584;37585	37585					0.18028660167453836
NIIAKKIVL	9	Unmodified	_NIIAKKIVL_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.34930419921875	2	506.349877	1010.6852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.514	1	41.514	41.014	42.014	0								0	0	0	0.11932	1	8953	8953		41.84	11.203	1				30502	2673	17660	17661	37586	37586					0.18028660167453836
NIIAKKIVL	9	Unmodified	_NIIAKKIVL_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.3499450683594	2	506.349877	1010.6852	0.22344	0.00011314	-0.053993	-2.7339E-05	0.16944	8.5798E-05	506.34976031839994	41.149	0.58707	41.24	40.952	41.539	0.090252					66	21	4	0	0	0	0.0037552	3	8868	8819;8868;8920		96.285	22.661	1	3905900			30503	2673	17660	17661	37587;37588;37589	37588					0.18028660167453836
NIIAKKIVL	9	Unmodified	_NIIAKKIVL_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.3499755859375	2	506.349877	1010.6852	0.15951	8.0768E-05	0.01197	6.0612E-06	0.17148	8.683E-05	506.34978337620663	41.114	0.59584	41.211	40.909	41.505	0.096626					65	21	4	0	0	0	0.0042343	3	8834	8787;8834;8881		92.491	17.562	1	3374700			30504	2673	17660	17661	37590;37591;37592	37591					0.18028660167453836
NIINRNRTLLP	11	Unmodified	_NIINRNRTLLP_					0	0	0		nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	nc|ENSG00000163873|Q13003-2|GRIK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7878112792969	3	441.933366	1322.77827	-1.1031	-0.00048749	0.47521	0.00021001	-0.62787	-0.00027748	441.933472188268	34.576	0.38024	34.651	34.383	34.763	0.075302					20	13	2	0	0	0	0.33263	1	6832	6832		2.084	0	1	112060			30505	5748	17661	17662	37593	37593					0.12978932882765548
NIKDCMRAL	9	Unmodified	_NIKDCMRAL_					0	0	0		nc|ENSG00000178852|Q8IY85-2|EFCAB13;ENSG00000178852|ENST00000331493|EFCAB13	nc|ENSG00000178852|Q8IY85-2|EFCAB13	nc|ENSG00000178852|Q8IY85-2|EFCAB13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2720947265625	2	532.272986	1062.53142	0.46795	0.00024908	-1.5822	-0.00084214	-1.1142	-0.00059307	532.2723240767349	20.054	0.99599	20.054	19.574	20.57	0					67	36	2	0	0	0	0.29176	1	2468	2468		10.074	0	1	216680			30506	7079	17662	17663	37594	37594					0.0026555906797511852
NIKKAQKLI	9	Unmodified	_NIKKAQKLI_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2966918945312	2	528.350409	1054.68626	0.19256	0.00010174	0.2955	0.00015613	0.48806	0.00025787	528.3503475226003	14.289	0.2839	14.289	14.164	14.448	0					14	9	2	0	0	0	0.26257	1	654	654		0.52476	0	1	37844			30507	6248	17663	17664	37595	37595					0.1611087453638902
NIKKAQKLI	9	Unmodified	_NIKKAQKLI_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	528.350409	1054.68626	0.11072	5.8499E-05	0.17038	9.0019E-05	0.2811	0.00014852	528.3501740697462	14.396	0.20863	14.291	14.159	14.368	-0.10466	-0.01996	-1.445E-05	NaN	0.52476	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40516			30508	6248	17663	17664							0.1611087453638902
NIKKAQKLI	9	Unmodified	_NIKKAQKLI_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000168116|Q9HCI6-2|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.350409	1054.68626	0.16129	8.5216E-05	0.020387	1.0772E-05	0.18167	9.5988E-05	528.350230565815	14.42	0.27672	14.354	14.206	14.483	-0.066067	0.042287	-0.00017294	NaN	0.52476	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46750			30509	6248	17663	17664							0.1611087453638902
NIKRVEKVWP	10	Unmodified	_NIKRVEKVWP_					0	0	0			REV__nc|ENSG00000146802|Q9H0V1-2|TMEM168	REV__nc|ENSG00000146802|Q9H0V1-2|TMEM168	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.8765258789062	2	634.877322	1267.74009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.02	1	119.02	118.52	119.52	0								0	0	0	0.38202	1	30728	30728		0.40072	0.050084	1		+		30510	16357	17664	17665	37596	37596					0.11693046968093768
NIKVERVP	8	Unmodified	_NIKVERVP_					0	0	0			REV__CPVL|p.V344Sfs*18|1|0.04|ENSG00000106066|chr7:29064168-29064169|-/AGAAGTGATTTGTAATTTGA|frameshift_variant	REV__CPVL|p.V344Sfs*18|1|0.04|ENSG00000106066|chr7:29064168-29064169|-/AGAAGTGATTTGTAATTTGA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.3004150390625	2	477.790184	953.565815	0.18473	8.8262E-05	-0.75988	-0.00036306	-0.57515	-0.0002748	477.7897824031701	23.88	0.44088	23.808	23.614	24.055	-0.072559					25	14	2	0	0	0	0.3366	1	3646	3646		18.135	0	1	64547	+		30511	13285	17665	17666	37597	37597					0.08717466542759666
NIKYHDIPYI	10	Unmodified	_NIKYHDIPYI_					0	0	0		ENSG00000187699|ENST00000340623|C2orf88	ENSG00000187699|ENST00000340623|C2orf88	ENSG00000187699|ENST00000340623|C2orf88	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.3423461914062	2	638.340238	1274.66592	0.65181	0.00041608	-1.7891	-0.001142	-1.1373	-0.00072597	638.3397576621654	56.651	0.92912	56.73	56.358	57.287	0.078671					62	34	3	0	0	0	0.12843	1	13569	13569		41.84	1.8899	1	1210400			30512	7701	17666	17667	37598	37598					0.03957659085904197
NILGPEKGQ	9	Unmodified	_NILGPEKGQ_					0	0	0			REV__ENST00000475066.1_1_7:154759501-154775093:-|nuORF	REV__ENST00000475066.1_1_7:154759501-154775093:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.21466064453125	2	478.263999	954.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.496	1	60.496	59.996	60.996	0								0	0	0	0.22377	1	14799	14799		14.838	1.3304	1		+		30513	16776	17667	17668	37599	37599					0.034368834091424105
NILKQFIH	8	Unmodified	_NILKQFIH_					0	0	0			REV__ENSG00000171811|ENST00000368586|CFAP46	REV__ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.800537109375	2	506.800552	1011.58655	0.22429	0.00011367	0.9272	0.00046991	1.1515	0.00058358	506.8012282633644	41.443	0.77327	41.533	40.902	41.676	0.090252					74	29	4	0	0	0	0.4419	1	8944	8944		8.5933	0.68312	1	1477700	+		30514	17666	17668	17669	37600	37600					0.08122056922411502
NIMNSFSQK	9	Unmodified	_NIMNSFSQK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7604370117188	2	534.760766	1067.50698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.579	1	41.579	41.079	42.079	0								0	0	0	0.22666	1	8973	8973		13.906	1.6654	1				30515	1049	17669	17670	37601	37601					-0.02407377813869971
NIMNSFSQK	9	Unmodified	_NIMNSFSQK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7608032226562	2	534.760766	1067.50698	0.31144	0.00016655	-0.0048441	-2.5904E-06	0.3066	0.00016396	534.7602948126214	41.601	0.78014	41.691	41.378	42.158	0.090248					53	32	2	0	0	0	0.26612	1	8972	8972		13.906	1.3745	1	2984100			30516	1049	17669	17670	37602	37602					-0.02407377813869971
NINDKLTEKE	10	Unmodified	_NINDKLTEKE_					0	0	0		ENSG00000198382|ENST00000356136|UVRAG;nc|ENSG00000198382|Q9P2Y5-2|UVRAG	ENSG00000198382|ENST00000356136|UVRAG	ENSG00000198382|ENST00000356136|UVRAG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3174438476562	2	602.314417	1202.61428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.888	1	94.886	94.386	95.386	-0.0020142								0	0	0	0.37807	1	25329	25329		2.9952	0	1				30517	8067	17670	17671	37603	37603					0.02107870601344075
NINGAEIGAK	10	Unmodified	_NINGAEIGAK_					0	0	0			REV__ENSG00000136875|ENST00000374198|PRPF4	REV__ENSG00000136875|ENST00000374198|PRPF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.1754150390625	2	493.766906	985.519259	0.40411	0.00019954	-0.4143	-0.00020457	-0.010189	-5.0308E-06	493.76656272373043	17.161	0.70092	17.101	16.859	17.56	-0.060429					56	24	3	0	0	0	0.31847	1	1647	1647		6.7232	1.9672	1	150720	+		30518	15834	17671	17672	37604	37604					0.02591981920818398
NIPGFPTVRF	10	Unmodified	_NIPGFPTVRF_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1;nc|ENSG00000116260|O00391-2|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.3167724609375	2	574.316566	1146.61858	0.78792	0.00045252	-0.88257	-0.00050688	-0.094646	-5.4357E-05	574.3159882354815	50.146	0.56324	50.191	49.957	50.52	0.044891					51	20	3	0	0	0	0.16839	1	11614	11614		36.506	0	1	680000			30519	2719	17672	17673	37605	37605					0.05113424605565342
NIPQNIER	8	Unmodified	_NIPQNIER_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000570209.1_1_15:31107479-31108768:+|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.6739807128906	2	492.267073	982.519593	0.30994	0.00015257	-0.38669	-0.00019035	-0.07675	-3.7782E-05	492.26676484205245	17.593	0.53915	17.593	17.296	17.835	0					28	18	2	0	0	0	0.34272	1	1621	1621		7.9102	7.9102	1	77364			30520	3390	17673	17674	37606	37606					0.027634016406636874
NIQILKQPF	9	Unmodified	_NIQILKQPF_					0	0	0		ENSG00000198185|ENST00000692313|ZNF334	ENSG00000198185|ENST00000692313|ZNF334	ENSG00000198185|ENST00000692313|ZNF334	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.30908203125	2	550.826766	1099.63898	0.40729	0.00022434	-0.52562	-0.00028953	-0.11834	-6.5183E-05	550.8262810046665	42.358	0.35303	42.443	42.295	42.648	0.085197					15	12	2	0	0	0	0.25622	1	9266	9266		7.2892	3.6927	1	132890			30521	8048	17674	17675	37607	37607					0.09314595265368553
NIQLTHHQ	8	Unmodified	_NIQLTHHQ_					0	0	0			REV__Tigger1_dup8984|chr12:21768325-21770471:+|1.0340961866251268|0.4575146523094087|1.18|539.0|46|2|sense	REV__Tigger1_dup8984|chr12:21768325-21770471:+|1.0340961866251268|0.4575146523094087|1.18|539.0|46|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.77215576171875	2	495.759415	989.504277	0.2517	0.00012478	-1.3853	-0.00068678	-1.1336	-0.000562	495.7586402217598	26.082	0.47476	26.082	25.846	26.321	0					36	16	3	0	0	0	0.23581	1	4204	4204		38.151	0	1	190480	+		30522	23332	17675	17676	37608	37608					0.00910534843478672
NIRDFLVEI	9	Unmodified	_NIRDFLVEI_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.288818359375	2	559.813856	1117.61316	0.26928	0.00015075	0.098392	5.5081E-05	0.36767	0.00020583	560.3153587802601	73.995	0.19664	74.048	73.95	74.146	0.052361					9	6	2	0	0	0	0.18479	1	18939	18939		34.932	8.6639	1	249670			30523	1868	17676	17677	37609	37609					0.05905701023107213
NISAQVFGII	10	Unmodified	_NISAQVFGII_					0	0	0		ENSG00000119686|ENST00000238667|FLVCR2;nc|ENSG00000119686|Q9UPI3-2|FLVCR2;ENST00000556745.1_1_14:76107286-76108289:+|nuORF	ENSG00000119686|ENST00000238667|FLVCR2	ENSG00000119686|ENST00000238667|FLVCR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8169555664062	2	531.303124	1060.5917	0.47228	0.00025092	0.61483	0.00032666	1.0871	0.00057758	531.3034363228119	81.468	0.53985	81.468	81.28	81.82	0					35	23	2	0	0	0	0.2811	1	21248	21248		22.736	2.2827	1	194700			30524	2898	17677	17678	37610	37610					0.06382315994392229
NISGLLANR	9	Unmodified	_NISGLLANR_					0	0	0		ENSG00000256683|ENST00000243644|ZNF350	ENSG00000256683|ENST00000243644|ZNF350	ENSG00000256683|ENST00000243644|ZNF350	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2955017089844	2	479.277441	956.540328	0.39006	0.00018695	-1.2674	-0.00060745	-0.87738	-0.00042051	479.2770084832166	83.068	0.55756	83.141	82.979	83.536	0.073097					26	20	2	0	0	0	0.25323	1	21689	21689		10.074	1.4806	1	56470			30525	8629	17678	17679	37611	37611					0.060319920203255606
NISRYLTDI	9	Unmodified	_NISRYLTDI_					0	0	0		ENST00000541541.5_1_12:31862005-31881942:-|nuORF;nc|ENSG00000151743|Q8IY45-2|AMN1;ENSG00000151743|ENST00000281471|AMN1	ENST00000541541.5_1_12:31862005-31881942:-|nuORF	ENST00000541541.5_1_12:31862005-31881942:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.25048828125	2	547.795663	1093.57677	0.60333	0.0003305	0.21775	0.00011928	0.82108	0.00044978	547.7961035234384	43.431	0.35383	43.515	43.356	43.71	0.083992					17	12	2	0	0	0	0.22674	1	9507	9507		22.736	0	1	131960			30526	4981	17679	17680	37612	37612					0.03372824126381602
NITIYPMPL	9	Unmodified	_NITIYPMPL_					0	0	0			REV__ENST00000595138.1_1_19:43519232-43530599:-|nuORF	REV__ENST00000595138.1_1_19:43519232-43530599:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7431640625	2	531.288628	1060.5627	0.058803	3.1241E-05	4.0002	0.0021252	4.059	0.0021565	531.2903207618483	12.911	0.11352	12.843	12.791	12.905	-0.067496					5	3	2	0	0	0	0.26117	1	260	260		2.3027	0.4585	1	10294	+		30527	22590	17680	17681	37613	37613					0.03484455373745732
NITIYPMPL	9	Unmodified	_NITIYPMPL_					0	0	0			REV__ENST00000595138.1_1_19:43519232-43530599:-|nuORF	REV__ENST00000595138.1_1_19:43519232-43530599:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.288628	1060.5627	0.15243	8.0985E-05	4.4283	0.0023527	4.5807	0.0024337	531.2907127957416	12.898	0.16914	12.898	12.783	12.952	0	0.031796	0.00039851	NaN	2.3027	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12374	+		30528	22590	17680	17681							0.03484455373745732
NITKGGLVLF	10	Unmodified	_NITKGGLVLF_					0	0	0		nc|ENSG00000141127|O60256-3|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2	nc|ENSG00000141127|O60256-3|PRPSAP2	nc|ENSG00000141127|O60256-3|PRPSAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3032836914062	2	531.321317	1060.62808	0.61604	0.00032732	-1.4672	-0.00077954	-0.85112	-0.00045222	531.3202865683357	55.673	0.38139	55.744	55.422	55.804	0.070885					20	13	2	0	0	0	0.2811	1	13287	13287		22.736	2.2827	1	213170			30529	4357	17681	17682	37614	37614					0.1001919289108173
NITKLSSRN	9	Unmodified	_NITKLSSRN_					0	0	0			REV__nc|ENSG00000139304|Q9UMZ3|PTPRQ	REV__nc|ENSG00000139304|Q9UMZ3|PTPRQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7738037109375	2	516.793455	1031.57236	0.38564	0.0001993	0.39561	0.00020445	0.78125	0.00040374	516.7932700713528	90.666	0.55364	90.666	90.369	90.923	0					77	43	2	0	0	0	0.24289	1	24012	24012		13.042	2.9685	1	336760	+		30530	15980	17682	17683	37615	37615					0.057833597034687045
NITKLSSRN	9	Unmodified	_NITKLSSRN_					0	0	0			REV__nc|ENSG00000139304|Q9UMZ3|PTPRQ	REV__nc|ENSG00000139304|Q9UMZ3|PTPRQ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	516.793455	1031.57236	0.3817	0.00019726	0.16892	8.7298E-05	0.55062	0.00028456	516.7932157436667	90.569	0.53113	90.57	90.368	90.899	0.0003891	-0.051733	-0.00020651	NaN	8.7454	71	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297410	+		30531	15980	17682	17683							0.057833597034687045
NITLKPKEVCK	11	Unmodified	_NITLKPKEVCK_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-2|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.8535766601562	2	636.870848	1271.72714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.616	1	65.705	65.205	66.205	0.088882								0	0	0	0.28921	1	16370	16370		21.59	3.2171	1				30532	5305	17683	17684	37616	37616					0.10214847793690751
NIVCQKII	8	Unmodified	_NIVCQKII_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7683410644531	2	465.775688	929.536823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.204	1	78.173	77.673	78.673	-0.030434								0	0	0	0.36336	1	20206	20206		8.5933	0.68312	1		+		30533	16212	17684	17685	37617	37617					0.06923605922111165
NIVEEMVNI	9	Unmodified	_NIVEEMVNI_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1;ARFGEF1|p.W1378Gfs*2|1|0.21|ENSG00000066777|chr8:67224979-67224979|A/-|frameshift_variant	ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2989501953125	2	530.7708	1059.52705	0.080991	4.2987E-05	-0.45132	-0.00023955	-0.37033	-0.00019656	530.7704820606525	13.238	0.25556	13.17	13.047	13.302	-0.067495					13	7	2	0	0	0	0.25843	1	350	350		5.7319	1.7875	1	53265			30534	846	17685	17686	37618	37618					-0.00033626873914727184
NIVHKMIK	8	Unmodified	_NIVHKMIK_					0	0	0			REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.31610107421875	2	491.796955	981.579357	0.32757	0.0001611	-1.5068	-0.00074104	-1.1792	-0.00057994	491.79579574214006	43.357	1.3845	43.357	42.871	44.255	0					98	50	3	0	0	0	0.4419	1	9481	9481		8.5933	0.68312	1	331630	+		30535	15629	17686	17687	37619	37619					0.08783001050346684
NIVHRGVG	8	Unmodified	_NIVHRGVG_					0	0	0		nc|ENSG00000015153|Q8IY57-4|YAF2	nc|ENSG00000015153|Q8IY57-4|YAF2	nc|ENSG00000015153|Q8IY57-4|YAF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2459411621094	2	426.245944	850.477334	-0.074357	-3.1695E-05	0.062712	2.6731E-05	-0.011646	-4.9639E-06	426.2459524113686	79.845	1.098	79.907	79.293	80.391	0.061417					79	42	3	0	0	0	0.34337	1	20716	20716		2.3027	0	1	556160			30536	12565	17687	17688	37620	37620					0.04611471022963087
NIVHRGVG	8	Unmodified	_NIVHRGVG_					0	0	0		nc|ENSG00000015153|Q8IY57-4|YAF2	nc|ENSG00000015153|Q8IY57-4|YAF2	nc|ENSG00000015153|Q8IY57-4|YAF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.2457580566406	2	426.245944	850.477334	0.00088161	3.7578E-07	0.045488	1.9389E-05	0.04637	1.9765E-05	426.24596195709483	79.89	1.4705	79.861	79.003	80.473	-0.028923					93	54	3	0	0	0	0.34337	1	20724	20724		5.2307	0	1	551330			30537	12565	17687	17688	37621	37621					0.04611471022963087
NIVIKQQICPE	11	Unmodified	_NIVIKQQICPE_					0	0	0			REV__ENST00000540714.1_1_9:5919686-5933837:-|nuORF	REV__ENST00000540714.1_1_9:5919686-5933837:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.8551635742188	2	642.852655	1283.69076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.62	1	99.62	99.12	100.12	0								0	0	0	0.37609	1	26646	26646		2.4985	0	1		+		30538	18258	17688	17689	37622	37622					0.060259708969852
NIVKVQIGL	9	Unmodified	_NIVKVQIGL_					0	0	0			REV__nc|ENSG00000163655|P49915-2|GMPS	REV__nc|ENSG00000163655|P49915-2|GMPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8033752441406	2	492.316035	982.617516	0.13644	6.7173E-05	-0.1136	-5.5929E-05	0.022839	1.1244E-05	492.31603803455863	42.754	1.3495	42.845	42.499	43.849	0.091362					152	49	5	0	0	0	0.21303	1	9596	9596		21.747	0	1	14342000	+		30539	17077	17689	17690	37623	37623					0.12551210236654242
NIVLSNPKKRN	11	Unmodified	_NIVLSNPKKRN_					0	0	0		ECHDC3|p.S210Lfs*34|1|0.3|ENSG00000134463|chr10:11763258-11763258|T/-|frameshift_variant;ENSG00000134463|ENST00000379215|ECHDC3	ECHDC3|p.S210Lfs*34|1|0.3|ENSG00000134463|chr10:11763258-11763258|T/-|frameshift_variant	ECHDC3|p.S210Lfs*34|1|0.3|ENSG00000134463|chr10:11763258-11763258|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8596801757812	2	641.883136	1281.75172	0.25597	0.00016431	-1.417	-0.00090957	-1.1611	-0.00074527	641.8820008893804	112	0.41194	111.98	111.85	112.26	-0.015625					71	49	2	0	0	0	0.33282	1	29113	29113		2.4985	1.0166	1	81161			30540	277	17690	17691	37624	37624					0.12211243991418996
NIVLSNPKKRN	11	Unmodified	_NIVLSNPKKRN_					0	0	0		ECHDC3|p.S210Lfs*34|1|0.3|ENSG00000134463|chr10:11763258-11763258|T/-|frameshift_variant;ENSG00000134463|ENST00000379215|ECHDC3	ECHDC3|p.S210Lfs*34|1|0.3|ENSG00000134463|chr10:11763258-11763258|T/-|frameshift_variant	ECHDC3|p.S210Lfs*34|1|0.3|ENSG00000134463|chr10:11763258-11763258|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8820190429688	2	641.883136	1281.75172	0.42693	0.00027404	-1.1425	-0.00073332	-0.71552	-0.00045928	641.8819138847725	111.99	0.69268	112.01	111.77	112.47	0.0131					123	84	2	0	0	0	0.45108	1	29141	29141		4.5289	2.0304	1	74750			30541	277	17690	17691	37625	37625					0.12211243991418996
NIVNQKASLW	10	Unmodified	_NIVNQKASLW_					0	0	0		ENST00000566611.5_1_16:57786940-57790081:+|nuORF;ENSG00000140854|ENST00000379661|KATNB1	ENST00000566611.5_1_16:57786940-57790081:+|nuORF	ENST00000566611.5_1_16:57786940-57790081:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8231811523438	2	586.824755	1171.63496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.1	1	104.1	103.6	104.6	0.0011444								0	0	0	0.36922	1	27670	27670		6.7232	0.51738	1				30542	4341	17691	17692	37626	37626					0.056005057716674855
NIVPVNQR	8	Unmodified	_NIVPVNQR_					0	0	0			REV__nc|ENSG00000151491|Q12929-2|EPS8	REV__nc|ENSG00000151491|Q12929-2|EPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2720947265625	2	470.272158	938.529764	0.11128	5.2334E-05	0.19073	8.9696E-05	0.30202	0.00014203	470.27219163285827	82.091	1.4972	82.091	81.504	83.001	0					133	56	4	0	0	0	0.45307	1	21551	21551		4.756	0	1	3749300	+		30543	16543	17692	17693	37627	37627					0.05804009365908769
NIVTRWNY	8	Unmodified	_NIVTRWNY_					0	0	0			REV__ENSG00000166211|ENST00000551346|SPIC	REV__ENSG00000166211|ENST00000551346|SPIC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2639770507812	2	533.277441	1064.54033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.487	1	24.487	23.987	24.987	0								0	0	0	0.36748	1	3765	3765		6.7232	0.99131	1		+		30544	17300	17693	17694	37628	37628					0.01063992020317528
NIYIAQNGSV	10	Unmodified	_NIYIAQNGSV_					0	0	0		nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.30078125	2	539.780013	1077.54547	0.60002	0.00032388	0.46308	0.00024996	1.0631	0.00057384	539.7799881138957	42.321	0.51706	42.412	42.037	42.554	0.091362					23	17	2	0	0	0	0.2623	1	9185	9185		26.268	11.43	1	251940			30545	4905	17694	17695	37629	37629					0.009802510922781948
NIYRLVTK	8	Unmodified	_NIYRLVTK_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;CHD2|p.N1397Tfs*9|1|0.25|ENSG00000173575|chr15:93002227-93002227|G/-|frameshift_variant;CHD2|p.E1396Rfs*10|1|0.24|ENSG00000173575|chr15:93002225-93002225|G/-|frameshift_variant;nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2	nc|ENSG00000153922|O14646-2|CHD1;ENSG00000173575|ENST00000394196|CHD2	ENSG00000173575|ENST00000394196|CHD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.79345703125	2	503.805834	1005.59712	0.39661	0.00019982	-0.41484	-0.000209	-0.01823	-9.1846E-06	503.8055931975254	26.359	1.0123	26.337	25.991	27.003	-0.022238					121	35	5	0	0	0	0.23494	1	4326	4326		46.021	0	1	1274600			30546	5093;6730	17695	17696	37630	37630					0.09454039576860396
NIYVYNEGK	9	Unmodified	_NIYVYNEGK_					0	0	0			REV__ENSG00000261150|ENST00000615648|EPPK1	REV__ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2981567382812	2	550.274564	1098.53457	0.38681	0.00021285	0.47732	0.00026266	0.86413	0.00047551	550.2745693817499	62.762	0.91364	62.753	62.465	63.379	-0.0085564					115	33	5	0	0	0	0.28128	1	15457	15457		11.64	0.52583	1	3336400	+		30547	19281	17696	17697	37631	37631					-0.010751512820206699
NKASPQPA	8	Unmodified	_NKASPQPA_					0	0	0		ENST00000412461.2_1_22:19043875-19044022:+|nuORF	ENST00000412461.2_1_22:19043875-19044022:+|nuORF	ENST00000412461.2_1_22:19043875-19044022:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.7852783203125	2	406.716685	811.418816	-0.16688	-6.7871E-05	0.25278	0.00010281	0.085902	3.4938E-05	406.71672118382594	24.197	0.74557	24.197	23.829	24.575	0					45	25	3	0	0	0	0.34337	1	3596	3596		2.3027	1.778	1	118540			30548	10277	17697	17698	37632	37632					0.005563696578064992
NKASPQPA	8	Unmodified	_NKASPQPA_					0	0	0		ENST00000412461.2_1_22:19043875-19044022:+|nuORF	ENST00000412461.2_1_22:19043875-19044022:+|nuORF	ENST00000412461.2_1_22:19043875-19044022:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	406.716685	811.418816	-0.11323	-4.6051E-05	0.21857	8.8898E-05	0.10535	4.2847E-05	406.7167496241116	24.299	0.65233	24.26	24.049	24.702	-0.038927	0.031527	-1.649E-05	NaN	2.3027	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150050			30549	10277	17697	17698							0.005563696578064992
NKCFYLTL	8	Unmodified	_NKCFYLTL_					0	0	0		ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;ENST00000492174.1_1_9:138741977-138754403:-|nuORF	ENSG00000130559|ENST00000389532|CAMSAP1	ENSG00000130559|ENST00000389532|CAMSAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.788330078125	2	501.259871	1000.50519	0.50392	0.0002526	-0.63648	-0.00031904	-0.13256	-6.6446E-05	502.26420156069486	82.769	1.0851	82.769	82.262	83.347	0					75	41	3	0	0	0	0.33993	1	21620	21620		16.942	3.0362	1	822620			30550	3486	17698	17699	37633	37633					0.004956131681524312
NKEIRNVLNF	10	Unmodified	_NKEIRNVLNF_					0	0	0			REV__ENST00000415861.2_1_6:109689610-109689763:-|nuORF	REV__ENST00000415861.2_1_6:109689610-109689763:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.24688720703125	3	416.234933	1245.68297	0.41315	0.00017197	-0.75699	-0.00031509	-0.34384	-0.00014312	416.2345863929847	44.434	0.7235	44.503	44.199	44.922	0.068569					40	26	2	0	0	0	0.3213	1	9755	9755		1.9064	0.1641	1	416800	+		30551	20811	17699	17700	37634	37634					0.0699557969169291
NKFKNMFLV	9	Unmodified	_NKFKNMFLV_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3377075195312	2	570.815344	1139.61614	0.41117	0.0002347	2.2571	0.0012884	2.6683	0.0015231	570.8171279951423	29.801	0.11181	29.813	29.774	29.886	0.012266					5	3	2	0	0	0	0.25988	1	5382	5382		3.9444	0	1	43520			30552	5913	17700	17701	37635	37635					0.0519125287623865
NKFQPGKKL	9	Unmodified	_NKFQPGKKL_					0	0	0		ENSG00000163788|ENST00000296088|SNRK;nc|ENSG00000163788|Q9NRH2-2|SNRK;ENST00000462810.1_1_3:43344695-43373803:+|nuORF	ENSG00000163788|ENST00000296088|SNRK	ENSG00000163788|ENST00000296088|SNRK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3007202148438	2	530.319109	1058.62366	0.26143	0.00013864	-1.0002	-0.00053044	-0.7388	-0.0003918	530.3184018723043	23.524	0.63775	23.452	23.153	23.791	-0.072559					50	22	3	0	0	0	0.31038	1	3537	3537		7.2892	0.56607	1	150430			30553	5731	17701	17702	37636	37636					0.09669728468179528
NKGIDSDASYP	11	Unmodified	_NKGIDSDASYP_					0	0	0		ENST00000480760.1_1_1:150720322-150737170:-|nuORF;nc|ENSG00000163131|P25774-2|CTSS;ENSG00000163131|ENST00000368985|CTSS	ENST00000480760.1_1_1:150720322-150737170:-|nuORF	ENST00000480760.1_1_1:150720322-150737170:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3316040039062	2	583.769842	1165.52513	0.28914	0.00016879	0.70293	0.00041035	0.99207	0.00057914	583.7702448448395	32.906	0.32789	32.96	32.818	33.146	0.054375					16	11	2	0	0	0	0.329	1	6276	6276		9.3831	2.0939	1	100030			30554	5651	17702	17703	37637	37637					-0.051009643581892306
NKGPSTLT	8	Unmodified	_NKGPSTLT_					0	0	0			REV__ENST00000494941.1_1_10:100173883-100174802:-|nuORF	REV__ENST00000494941.1_1_10:100173883-100174802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.1106262207031	2	409.224342	816.434132	-0.15956	-6.5297E-05	0.67409	0.00027585	0.51453	0.00021056	409.2244803106827	14.998	0.60913	14.888	14.676	15.285	-0.10982					35	21	3	0	0	0	0.34437	1	1002	1002		0.69038	0	1	101670	+		30555	21655	17703	17704	37638	37638					0.018572364549982012
NKIYRNTK	8	Unmodified	_NKIYRNTK_					0	0	0		L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|35|2|sense	L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|35|2|sense	L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|35|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.31201171875	2	518.79854	1035.58253	-0.1318	-6.8378E-05	-0.21878	-0.0001135	-0.35058	-0.00018188	518.7985772548113	12.629	0.17588	12.562	12.434	12.61	-0.067496					9	5	2	0	0	0	0.33993	1	167	167		16.942	0	1	76707			30556	12469	17704	17705	37639	37639					0.06615967428683689
NKKESDKLK	9	Unmodified	_NKKESDKLK_					0	0	0			REV__nc|ENSG00000143776|Q5VT25-3|CDC42BPA	REV__nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.316650390625	2	545.316763	1088.61897	0.44591	0.00024316	-0.03167	-1.727E-05	0.41424	0.00022589	545.3167857690152	80.248	3.793	80.313	79.277	83.07	0.065102					607	160	5	0	0	0	0.29638	4	20720	20720;20819;20865;20913		9.3831	6.7232	1	16780000	+		30557	16199	17705	17706	37640;37641;37642;37643	37640					0.07820799534761136
NKKKIIITE	9	Unmodified	_NKKKIIITE_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7772827148438	2	543.847699	1085.68084	0.12738	6.9278E-05	-0.23753	-0.00012918	-0.11015	-5.9904E-05	543.8474038561291	12.928	0.15595	12.928	12.847	13.003	0					8	5	2	0	0	0	0.26257	1	294	294		0.52476	0	1	10960			30558	7227	17706	17707	37644	37644					0.14143150953873374
NKKKIIITE	9	Unmodified	_NKKKIIITE_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.777099609375	2	543.847699	1085.68084	0.17422	9.4748E-05	-0.399	-0.000217	-0.22479	-0.00012225	543.8476277782022	12.971	0.14205	12.903	12.851	12.993	-0.067496					5	4	2	0	0	0	0.26257	1	309	309		0.52476	0	1	15153			30559	7227	17706	17707	37645	37645					0.14143150953873374
NKKKIIITE	9	Unmodified	_NKKKIIITE_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	543.847699	1085.68084	0.24698	0.00013432	-0.65264	-0.00035494	-0.40566	-0.00022062	543.8472125092378	12.98	0.13906	12.881	12.814	12.953	-0.099291	-0.023164	-0.00027065	NaN	0.52476	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19463			30560	7227	17706	17707							0.14143150953873374
NKKPFIKEA	9	Unmodified	_NKKPFIKEA_					0	0	0		ENSG00000122971|ENST00000242592|ACADS	ENSG00000122971|ENST00000242592|ACADS	ENSG00000122971|ENST00000242592|ACADS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.8316650390625	2	537.818941	1073.62333	0.2941	0.00015817	0.39094	0.00021025	0.68503	0.00036842	537.8195744236249	64.954	0.5067	64.943	64.721	65.227	-0.01133					39	18	3	0	0	0	0.17787	1	16250	16250		26.884	0	1	564480			30561	3082	17707	17708	37646	37646					0.08946308748318188
NKKPIGQVK	9	Unmodified	_NKKPIGQVK_					0	0	0		CSPP1|p.G1069Wfs*5|1|0.22|ENSG00000104218|chr8:67179923-67179924|-/T|frameshift_variant;nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1	CSPP1|p.G1069Wfs*5|1|0.22|ENSG00000104218|chr8:67179923-67179924|-/T|frameshift_variant	CSPP1|p.G1069Wfs*5|1|0.22|ENSG00000104218|chr8:67179923-67179924|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3186340332031	2	506.319109	1010.62366	0.24576	0.00012443	-0.90696	-0.00045921	-0.66121	-0.00033478	506.3184273628175	24.344	0.64753	24.344	24.058	24.706	0					49	21	3	0	0	0	0.2322	1	3712	3712		20.454	4.3045	1	287290			30562	244	17708	17709	37647	37647					0.11877728468186888
NKKPIGQVK	9	Unmodified	_NKKPIGQVK_					0	0	0		CSPP1|p.G1069Wfs*5|1|0.22|ENSG00000104218|chr8:67179923-67179924|-/T|frameshift_variant;nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1	CSPP1|p.G1069Wfs*5|1|0.22|ENSG00000104218|chr8:67179923-67179924|-/T|frameshift_variant	CSPP1|p.G1069Wfs*5|1|0.22|ENSG00000104218|chr8:67179923-67179924|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.31854248046875	2	506.319109	1010.62366	0.30782	0.00015585	-1.0529	-0.00053309	-0.74506	-0.00037724	506.31837067597087	24.378	0.70268	24.305	24.118	24.821	-0.072559					49	23	3	0	0	0	0.17611	1	3734	3734		34.102	0	1	291030			30563	244	17708	17709	37648	37648					0.11877728468186888
NKKPTLNSL	9	Unmodified	_NKKPTLNSL_					0	0	0		L1MEf_dup1694|chr2:208825398-208826842:+|2.073452806218134|0.1080183910784605|4.26|525.0|44|3|sense	L1MEf_dup1694|chr2:208825398-208826842:+|2.073452806218134|0.1080183910784605|4.26|525.0|44|3|sense	L1MEf_dup1694|chr2:208825398-208826842:+|2.073452806218134|0.1080183910784605|4.26|525.0|44|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.801025390625	2	507.800749	1013.58694	0.19332	9.817E-05	-0.44957	-0.00022829	-0.25624	-0.00013012	507.8004913355174	26.337	0.91639	26.337	26.009	26.925	0					83	31	4	0	0	0	0.23007	1	4408	4408		19.257	1.1106	1	1210600			30564	12471	17709	17710	37649	37649					0.08069431851606623
NKKQLVEK	8	Unmodified	_NKKQLVEK_					0	0	0			REV__ENST00000360162.7_1_10:111893488-111893578:+|nuORF	REV__ENST00000360162.7_1_10:111893488-111893578:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.28729248046875	2	493.803291	985.59203	0.13889	6.8583E-05	-0.071608	-3.536E-05	0.067278	3.3222E-05	493.8032814049546	22.451	0.58409	22.406	22.095	22.679	-0.044867					44	19	3	0	0	0	0.34367	1	3081	3081		4.3292	0.38484	1	170250	+		30565	20251	17710	17711	37650	37650					0.09865735714242874
NKKSFKERC	9	Unmodified	_NKKSFKERC_					0	0	0		ENSG00000144118|ENST00000272519|RALB;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB	ENSG00000144118|ENST00000272519|RALB	ENSG00000144118|ENST00000272519|RALB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3192138671875	2	570.303133	1138.59171	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.039	1	46.039	45.539	46.539	0								0	0	0	0.19932	1	10340	10340		22.736	5.6234	1				30566	4565	17711	17712	37651	37651					0.027959927227357184
NKLAAQLAAT	10	Unmodified	_NKLAAQLAAT_					0	0	0			REV__ENST00000602490.1_1_1:183602183-183602348:-|nuORF	REV__ENST00000602490.1_1_1:183602183-183602348:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.3131103515625	2	500.792924	999.571294	0.34507	0.00017281	0.0050247	2.5163E-06	0.35009	0.00017532	500.7927744110244	30.764	0.55852	30.764	30.448	31.007	0					27	19	2	0	0	0	0.30093	1	5685	5685		21.537	3.3906	1	72910	+		30567	17002	17712	17713	37652	37652					0.07149145334540208
NKLFQASSL	9	Unmodified	_NKLFQASSL_					0	0	0		ENST00000285518.10_1_8:6616494-6616545:+|nuORF	ENST00000285518.10_1_8:6616494-6616545:+|nuORF	ENST00000285518.10_1_8:6616494-6616545:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7901306152344	2	504.279649	1006.54475	0.37421	0.0001887	0.18128	9.1418E-05	0.55549	0.00028012	504.27965607319504	52.381	0.80573	52.431	52.202	53.008	0.050571					48	29	2	0	0	0	0.24993	1	12441	12441		8.7454	2.0222	1	1202100			30568	9140	17713	17714	37653	37653					0.04173456443231771
NKLGLNQCMS	10	Unmodified	_NKLGLNQCMS_					0	0	0		ENSG00000119638|ENST00000238616|NEK9;ENST00000556170.5_1_14:75553702-75572727:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF	ENSG00000119638|ENST00000238616|NEK9	ENSG00000119638|ENST00000238616|NEK9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2674560546875	2	554.267901	1106.52125	0.42968	0.00023816	-1.2347	-0.00068436	-0.80503	-0.0004462	554.2673656997378	45.949	0.47128	46.014	45.782	46.253	0.065048					38	16	3	0	0	0	0.27059	1	10290	10290		24.021	0.23079	1	737450			30569	2890	17714	17715	37654	37654					-0.027750486572585942
NKLIEKIIP	9	Unmodified	_NKLIEKIIP_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.8001098632812	2	534.344792	1066.67503	0.32972	0.00017619	0.98909	0.00052851	1.3188	0.0007047	534.3450768106754	49.34	0.28865	49.372	49.18	49.468	0.032043					16	9	2	0	0	0	0.23749	1	11354	11354		20.415	4.5674	1	138770	+		30570	16725	17715	17716	37655	37655					0.1443605244223818
NKLKDIIPFYR	11	Unmodified	_NKLKDIIPFYR_					0	0	0			REV__CON__Q7Z3Y8	REV__CON__Q7Z3Y8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7527160644531	3	469.61	1405.80817	0.72842	0.00034207	0.021323	1.0013E-05	0.74974	0.00035209	469.6101372739606	47.435	0.13064	47.479	47.373	47.504	0.043324					6	4	2	0	0	0	0.33169	1	10745	10745		3.8459	0	1	168410	+	+	30571	13276	17716	17717	37656	37656					0.12149871828046344
NKLPGKGR	8	Unmodified	_NKLPGKGR_					0	0	0			REV__ENSG00000066032|ENST00000402739|CTNNA2	REV__ENSG00000066032|ENST00000402739|CTNNA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8539123535156	2	435.269419	868.524284	0.17505	7.6195E-05	-1.6712	-0.00072742	-1.4961	-0.00065123	435.2690096114925	47.664	0.19436	47.664	47.519	47.714	0					8	6	2	0	0	0	0.34167	1	10850	10850		11.64	7.6959	1	73103	+		30572	13674	17717	17718	37657	37657					0.08476330574092117
NKLQQLPA	8	Unmodified	_NKLQQLPA_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7933044433594	2	456.269084	910.523616	0.044734	2.0411E-05	-1.1015	-0.00050256	-1.0567	-0.00048215	456.268837783547	33.265	0.745	33.265	32.955	33.7	0					41	26	2	0	0	0	0.31934	1	6388	6388		18.135	0	1	167940			30573	2219	17718	17719	37658	37658					0.06477491134364755
NKLQQLPA	8	Unmodified	_NKLQQLPA_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.79327392578125	2	456.269084	910.523616	0.036579	1.669E-05	-0.20942	-9.5552E-05	-0.17284	-7.8862E-05	456.2688383876159	33.251	0.74177	33.307	32.905	33.647	0.056072					33	26	2	0	0	0	0.33245	1	6350	6350		19.439	3.5918	1	183990			30574	2219	17718	17719	37659	37659					0.06477491134364755
NKMAELAKLK	10	Unmodified	_NKMAELAKLK_					0	0	0			REV__ENSG00000151789|ENST00000281523|ZNF385D	REV__ENSG00000151789|ENST00000281523|ZNF385D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.26806640625	2	573.339184	1144.66381	0.45207	0.00025919	0.55737	0.00031956	1.0094	0.00057875	573.3396181245403	44.174	0.42449	44.249	44.046	44.47	0.075359					25	15	2	0	0	0	0.31794	1	9810	9810		8.1555	0.8663	1	335710	+		30575	16558	17719	17720	37660	37660					0.0972690707642414
NKMAELAKLK	10	Unmodified	_NKMAELAKLK_					0	0	0			REV__ENSG00000151789|ENST00000281523|ZNF385D	REV__ENSG00000151789|ENST00000281523|ZNF385D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	573.339184	1144.66381	0.32744	0.00018773	1.011	0.00057967	1.3385	0.0007674	573.3399333909226	44.36	0.624	44.36	44.115	44.739	0	0.055403	0.0002592	NaN	8.1555	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	408430	+		30576	16558	17719	17720							0.0972690707642414
NKMKNLSYPF	10	Unmodified	_NKMKNLSYPF_					0	0	0		ENSG00000047617|ENST00000682330|ANO2;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2	ENSG00000047617|ENST00000682330|ANO2	ENSG00000047617|ENST00000682330|ANO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.93280029296875	3	414.549753	1240.62743	0.54802	0.00022718	1.7452	0.00072349	2.2933	0.00095067	414.55038341337576	40.07	0.37378	40.163	40.02	40.394	0.09267					15	12	2	0	0	0	0.31746	1	8560	8560		3.5871	2.8894	1	138690			30577	635	17720	17721	37661	37661					0.016740301797426582
NKMSTQLK	8	Unmodified	_NKMSTQLK_					0	0	0			REV__nc|ENSG00000163462|Q7Z4K8-3|TRIM46	REV__nc|ENSG00000163462|Q7Z4K8-3|TRIM46	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.2709045410156	2	475.260402	948.506251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.559	1	30.587	30.087	31.087	0.027946								0	0	0	0.27792	1	5607	5607		32.305	9.1571	1		+		30578	21333	17721	17722	37662	37662					0.029938275370682277
NKNKMQEKLF	10	Unmodified	_NKNKMQEKLF_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;nc|ENSG00000110066|Q4FZB7-4|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.59259033203125	3	427.232424	1278.67544	0.25486	0.00010888	0.84007	0.0003589	1.0949	0.00046779	427.2327607918377	47.102	0.31341	47.102	46.961	47.274	0					14	10	2	0	0	0	0.31942	1	10692	10692		3.5871	1.8448	1	334020			30579	2293	17722	17723	37663	37663					0.047251040997707605
NKNKMQEKLF	10	Unmodified	_NKNKMQEKLF_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;nc|ENSG00000110066|Q4FZB7-4|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	427.232424	1278.67544	0.47991	0.00020503	0.84265	0.00036001	1.3226	0.00056504	427.2330337042105	46.966	0.42839	47.02	46.827	47.256	0.054375	-0.041153	2.6716E-06	NaN	3.5871	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261080			30580	2293	17722	17723							0.047251040997707605
NKNLKKNY	8	Unmodified	_NKNLKKNY_					0	0	0		PLG|p.Q740Ifs*14|1|0.04|ENSG00000122194|chr6:160752207-160752208|CA/-|frameshift_variant;ENSG00000122194|ENST00000308192|PLG	PLG|p.Q740Ifs*14|1|0.04|ENSG00000122194|chr6:160752207-160752208|CA/-|frameshift_variant	PLG|p.Q740Ifs*14|1|0.04|ENSG00000122194|chr6:160752207-160752208|CA/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.283447265625	2	511.293091	1020.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.151	1	34.217	33.717	34.717	0.066704								0	0	0	0.37078	1	6697	6697		5.2307	0	1				30581	3032	17723	17724	37664	37664					0.06216565054410239
NKNNWMQR	8	Unmodified	_NKNNWMQR_					0	0	0			REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF	REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2957153320312	2	545.764175	1089.5138	0.41785	0.00022805	2.9349	0.0016018	3.3528	0.0018298	545.7659115666563	17.495	0.33183	17.495	17.296	17.628	0					19	11	2	0	0	0	0.34408	1	1678	1678		2.3027	0	1	31046	+		30582	16736	17724	17725	37665	37665					-0.02738020142669484
NKQELFRVKNI	11	Unmodified	_NKQELFRVKNI_					0	0	0			REV__ENSG00000161850|ENST00000257974|KRT82	REV__ENSG00000161850|ENST00000257974|KRT82	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.3008117675781	3	463.605137	1387.79358	-0.019201	-8.9018E-06	-0.47871	-0.00022193	-0.49792	-0.00023084	463.9391246788527	43.297	0.54188	43.297	43.034	43.576	0					34	19	2	0	0	0	0.33122	1	9532	9532		7.0371	5.7074	1	505990	+	+	30583	13279	17725	17726	37666	37666					0.11519799679945208
NKQNDKLKMY	10	Unmodified	_NKQNDKLKMY_					0	0	0			REV__ENST00000527539.1_1_11:119692399-119692651:-|nuORF	REV__ENST00000527539.1_1_11:119692399-119692651:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.2641906738281	3	427.892179	1280.65471	0.083788	3.5852E-05	0.52995	0.00022676	0.61374	0.00026261	428.22679557299585	48.535	0.52936	48.535	48.298	48.827	0					27	18	2	0	0	0	0.3183	1	11112	11112		3.0723	0	1	293810	+		30584	21977	17726	17727	37667	37667					0.025605137201182515
NKQNDKLKMY	10	Unmodified	_NKQNDKLKMY_					0	0	0			REV__ENST00000527539.1_1_11:119692399-119692651:-|nuORF	REV__ENST00000527539.1_1_11:119692399-119692651:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.2642822265625	3	427.892179	1280.65471	0.28348	0.0001213	-0.06703	-2.8681E-05	0.21645	9.2616E-05	427.89203622449435	48.478	0.54118	48.525	48.204	48.745	0.04752					40	19	3	0	0	0	0.31911	1	11045	11045		0.69767	0.2894	1	238790	+		30585	21977	17726	17727	37668	37668					0.025605137201182515
NKQQFGNLK	9	Unmodified	_NKQQFGNLK_					0	0	0		nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000162825|ENST00000698833|NBPF20	nc|ENSG00000269713|P0DPF3-2|NBPF9	nc|ENSG00000269713|P0DPF3-2|NBPF9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2884521484375	2	538.795998	1075.57744	0.38205	0.00020585	-0.11939	-6.4325E-05	0.26266	0.00014152	538.7956669684295	24.092	0.56887	24.092	23.917	24.486	0					30	19	2	0	0	0	0.31417	1	3715	3715		6.7232	2.1943	1	152220			30586	8690	17727	17728	37669	37669					0.04267663566088231
NKQQQIKHIWK	11	Unmodified	_NKQQQIKHIWK_					0	0	0			REV__nc|ENSG00000196678|A8K979-3|ERI2	REV__nc|ENSG00000196678|A8K979-3|ERI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7882385253906	3	484.280765	1449.82047	0.73583	0.00035635	2.78	0.0013463	3.5158	0.0017027	484.6164363977727	36.444	0.4116	36.53	36.4	36.811	0.08625					21	14	2	0	0	0	0.33236	1	7415	7415		0.36667	0	1	143210	+		30587	18676	17728	17729	37670	37670					0.11354908291104948
NKQYSKYQF	9	Unmodified	_NKQYSKYQF_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.3010864257812	2	603.301113	1204.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.068	1	90.069	89.569	90.569	0.0003891								0	0	0	0.2575	1	23848	23848		3.9444	0.94915	1		+		30588	14878	17729	17730	37671	37671					-0.006437734993596678
NKRFVTNSMF	10	Unmodified	_NKRFVTNSMF_					0	0	0			REV__nc|ENSG00000186111|O60331-4|PIP5K1C	REV__nc|ENSG00000186111|O60331-4|PIP5K1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8982849121094	3	415.213252	1242.61793	-0.0086137	-3.5765E-06	4.19	0.0017397	4.1814	0.0017362	415.2153141264652	18.164	0.27356	18.106	17.953	18.227	-0.058174					20	9	3	0	0	0	0.3183	1	1857	1857		8.4443	0.83535	1	28625	+		30589	18430	17730	17731	37672	37672					0.006322618942022018
NKRPCRKFL	9	Unmodified	_NKRPCRKFL_					0	0	0		ENSG00000100319|ENST00000344318|ZMAT5	ENSG00000100319|ENST00000344318|ZMAT5	ENSG00000100319|ENST00000344318|ZMAT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.8353881835938	2	581.33731	1160.66007	0.2462	0.00014313	-0.12863	-7.4778E-05	0.11757	6.8348E-05	581.3372406977547	23.946	1.2626	23.874	23.53	24.793	-0.072559					123	42	5	0	0	0	0.34681	1	3504	3504		1.8442	1.2427	1	1365000			30590	1568	17731	17732	37673	37673					0.08616282093248628
NKRTILENQY	10	Unmodified	_NKRTILENQY_					0	0	0		MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|147|2|anti-sense	MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|147|2|anti-sense	MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|147|2|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	639.8435668945312	2	639.843676	1277.6728	0.011937	7.6375E-06	0.043034	2.7535E-05	0.05497	3.5172E-05	639.8438516379643	98.246	0.545	98.246	98.026	98.571	0					232	63	6	0	0	0	0.38773	2	26302	26302;26338		5.7319	0	1	1159500			30591	12531	17732	17733	37674;37675	37674					0.04506971966475248
NKRVELNK	8	Unmodified	_NKRVELNK_					0	0	0			REV__ENSG00000185149|ENST00000329476|NPY2R	REV__ENSG00000185149|ENST00000329476|NPY2R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7986755371094	2	500.79854	999.582528	-0.012574	-6.297E-06	0.1963	9.8305E-05	0.18372	9.2008E-05	500.7986078118601	18.68	0.58261	18.621	18.432	19.014	-0.058174					50	20	4	0	0	0	0.28276	1	2021	2021		32.786	2.1491	1	200290	+		30592	18359	17733	17734	37676	37676					0.08271967428709104
NKSLLPLPQT	10	Unmodified	_NKSLLPLPQT_					0	0	0		ENST00000323646.9_1_11:63381507-63381663:-|nuORF	ENST00000323646.9_1_11:63381507-63381663:-|nuORF	ENST00000323646.9_1_11:63381507-63381663:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3452758789062	2	555.829506	1109.64446	0.0060502	3.3629E-06	-0.88215	-0.00049032	-0.8761	-0.00048696	555.8292582569543	12.852	0.51938	12.753	12.578	13.097	-0.099291					60	17	4	0	0	0	0.39227	1	311	311		4.897	1.3005	1	497910			30593	9396	17734	17735	37677	37677					0.09402274057174509
NKSQFVPPF	9	Unmodified	_NKSQFVPPF_					0	0	0		MDM1|p.A433Kfs*66|1|0.03|ENSG00000111554|chr12:68315151-68315152|-/TG|frameshift_variant;MDM1|p.A433Lfs*68|1|0.04|ENSG00000111554|chr12:68315150-68315151|-/AAGAGAAG|frameshift_variant;nc|ENSG00000111554|Q8TC05-4|MDM1;nc|ENSG00000111554|Q8TC05|MDM1;ENSG00000111554|ENST00000682720|MDM1	MDM1|p.A433Kfs*66|1|0.03|ENSG00000111554|chr12:68315151-68315152|-/TG|frameshift_variant	MDM1|p.A433Kfs*66|1|0.03|ENSG00000111554|chr12:68315151-68315152|-/TG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2826538085938	2	532.282192	1062.54983	0.67011	0.00035669	0.26801	0.00014266	0.93812	0.00049935	532.2822716152267	58.091	2.4728	58.074	57.606	60.079	-0.0172					246	88	5	0	0	0	0.23007	1	14469	14469		19.257	0	1	14009000			30594	2369	17735	17736	37678	37678					0.021057603058579843
NKSRSTSII	9	Unmodified	_NKSRSTSII_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.76568603515625	2	503.288005	1004.56146	0.11862	5.9702E-05	0.93957	0.00047287	1.0582	0.00053258	503.28849707185356	16.385	0.55777	16.27	16.11	16.667	-0.11434					41	19	3	0	0	0	0.26204	1	1383	1383		1.4819	0.28856	1	173820	+		30595	16232	17736	17737	37679	37679					0.05935957329199937
NKTDVILIL	9	Unmodified	_NKTDVILIL_					0	0	0		ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1;nc|ENSG00000196730|P53355-4|DAPK1;ENST00000472344.1_1_9:90113992-90254278:+|nuORF;DAPK1|p.F119Tfs*4|1|0.1|ENSG00000196730|chr9:87638011-87638018|AATTTCTC/-|frameshift_variant;ENST00000469067.5_1_9:90113992-90265069:+|nuORF	ENSG00000196730|ENST00000408954|DAPK1	ENSG00000196730|ENST00000408954|DAPK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8211059570312	2	514.82115	1027.62775	0.36495	0.00018788	-0.46943	-0.00024167	-0.10448	-5.379E-05	514.820848923512	62.713	0.99249	62.713	62.396	63.389	0					76	36	3	0	0	0	0.13643	1	15470	15470		45.7	5.7499	1	1741100			30596	7901	17737	17738	37680	37680					0.11503773171239118
NKTDVILIL	9	Unmodified	_NKTDVILIL_					0	0	0		ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1;nc|ENSG00000196730|P53355-4|DAPK1;ENST00000472344.1_1_9:90113992-90254278:+|nuORF;DAPK1|p.F119Tfs*4|1|0.1|ENSG00000196730|chr9:87638011-87638018|AATTTCTC/-|frameshift_variant;ENST00000469067.5_1_9:90113992-90265069:+|nuORF	ENSG00000196730|ENST00000408954|DAPK1	ENSG00000196730|ENST00000408954|DAPK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.8211059570312	2	514.82115	1027.62775	0.32242	0.00016599	-0.45276	-0.00023309	-0.13034	-6.7103E-05	514.8208403341192	62.635	0.86955	62.732	62.414	63.283	0.096989					85	31	4	0	0	0	0.14646	1	15432	15432		36.506	0	1	2091400			30597	7901	17737	17738	37681	37681					0.11503773171239118
NKTDVILIL	9	Unmodified	_NKTDVILIL_					0	0	0		ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1;nc|ENSG00000196730|P53355-4|DAPK1;ENST00000472344.1_1_9:90113992-90254278:+|nuORF;DAPK1|p.F119Tfs*4|1|0.1|ENSG00000196730|chr9:87638011-87638018|AATTTCTC/-|frameshift_variant;ENST00000469067.5_1_9:90113992-90265069:+|nuORF	ENSG00000196730|ENST00000408954|DAPK1	ENSG00000196730|ENST00000408954|DAPK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.8211669921875	2	514.82115	1027.62775	0.18959	9.7606E-05	-0.32044	-0.00016497	-0.13085	-6.7365E-05	514.8209292084679	62.681	0.86449	62.673	62.353	63.217	-0.0085564					88	31	4	0	0	0	0.11234	1	15453	15453		51.63	11.68	1	1738300			30598	7901	17737	17738	37682	37682					0.11503773171239118
NKTDVVLIL	9	Unmodified	_NKTDVVLIL_					0	0	0		nc|ENSG00000167657|O43293-2|DAPK3;ENSG00000167657|ENST00000545797|DAPK3	nc|ENSG00000167657|O43293-2|DAPK3	nc|ENSG00000167657|O43293-2|DAPK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.8133544921875	2	507.813325	1013.6121	0.35227	0.00017889	-0.25408	-0.00012903	0.098192	4.9863E-05	507.8131729218333	58.114	1.1702	58.114	57.798	58.968	0					118	40	5	0	0	0	0.003317	3	14080	14031;14080;14123		99.755	44.982	1	5271900			30599	6195	17738	17739	37683;37684;37685	37684					0.10583486654206808
NKTDVVLIL	9	Unmodified	_NKTDVVLIL_					0	0	0		nc|ENSG00000167657|O43293-2|DAPK3;ENSG00000167657|ENST00000545797|DAPK3	nc|ENSG00000167657|O43293-2|DAPK3	nc|ENSG00000167657|O43293-2|DAPK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.81341552734375	2	507.813325	1013.6121	0.31752	0.00016124	-0.22387	-0.00011368	0.093651	4.7557E-05	507.8132028588028	58.011	1.3067	58.097	57.765	59.071	0.085621					135	46	5	0	0	0	0.0019475	3	14028	13983;14028;14079		110.67	58.406	1	5280100			30600	6195	17738	17739	37686;37687;37688	37687					0.10583486654206808
NKTDVVLIL	9	Unmodified	_NKTDVVLIL_					0	0	0		nc|ENSG00000167657|O43293-2|DAPK3;ENSG00000167657|ENST00000545797|DAPK3	nc|ENSG00000167657|O43293-2|DAPK3	nc|ENSG00000167657|O43293-2|DAPK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.81317138671875	2	507.813325	1013.6121	0.50038	0.0002541	-0.52527	-0.00026674	-0.02489	-1.2639E-05	507.8130383680604	58.123	1.3995	58.106	57.793	59.193	-0.0172					119	50	4	0	0	0	0.0098873	3	14067	14018;14067;14120		79.596	31.25	1	5675200			30601	6195	17738	17739	37689;37690;37691	37690					0.10583486654206808
NKTIFLKFTTI	11	Unmodified	_NKTIFLKFTTI_					0	0	0			REV__ENST00000562275.5_1_16:89353821-89353923:-|nuORF	REV__ENST00000562275.5_1_16:89353821-89353923:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.2725830078125	3	442.599101	1324.77547	0.33504	0.00014829	3.0264	0.0013395	3.3615	0.0014878	442.9348732996717	77.213	0.24863	77.268	77.208	77.456	0.055412					11	8	2	0	0	0	0.33025	1	19949	19949		9.2438	5.6511	1	124280	+		30602	22317	17739	17740	37692	37692					0.12607664705228672
NKTKPDVVKI	10	Unmodified	_NKTKPDVVKI_					0	0	0			REV__nc|ENSG00000196865|Q8NBF2-2|NHLRC2	REV__nc|ENSG00000196865|Q8NBF2-2|NHLRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.351318359375	2	571.350606	1140.68666	0.42124	0.00024067	0.76205	0.0004354	1.1833	0.00067607	571.351007867913	29.521	0.64388	29.521	29.273	29.917	0					52	22	3	0	0	0	0.38515	1	5333	5333		6.2058	0.47393	1	322350	+		30603	18690	17740	17741	37693	37693					0.12194249465551366
NKTLVKKH	8	Unmodified	_NKTLVKKH_					0	0	0			REV__nc|ENSG00000164691|Q8N103-3|TAGAP	REV__nc|ENSG00000164691|Q8N103-3|TAGAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7742919921875	2	484.306001	966.597449	0.46816	0.00022673	-0.31046	-0.00015036	0.1577	7.6373E-05	484.3057888952465	40.208	0.50624	40.3	40.051	40.557	0.09267					28	17	2	0	0	0	0.34092	1	8547	8547		8.5933	1.304	1	217750	+		30604	17174	17741	17742	37694	37694					0.11281459296708363
NKTRPFFDNL	10	Unmodified	_NKTRPFFDNL_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.9205017089844	3	417.887533	1250.64077	0.37795	0.00015794	-1.6395	-0.00068512	-1.2615	-0.00052718	417.8867664350011	40.338	0.1604	40.431	40.313	40.474	0.09267					6	5	2	0	0	0	0.31867	1	8588	8588		7.9454	2.162	1	69278			30605	4987	17742	17743	37695	37695					0.025476042833361134
NKTYGRTF	8	Unmodified	_NKTYGRTF_					0	0	0			REV__nc|ENSG00000099331|Q13459-2|MYO9B	REV__nc|ENSG00000099331|Q13459-2|MYO9B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2498779296875	2	493.756341	985.498129	0.46646	0.00023032	0.70498	0.00034809	1.1714	0.00057841	493.75662444522794	21.734	0.38861	21.634	21.471	21.86	-0.10034					19	13	2	0	0	0	0.34337	1	2893	2893		5.2307	0	1	73420	+		30606	14129	17743	17744	37696	37696					0.004800166119593996
NKTYGRTF	8	Unmodified	_NKTYGRTF_					0	0	0			REV__nc|ENSG00000099331|Q13459-2|MYO9B	REV__nc|ENSG00000099331|Q13459-2|MYO9B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.756341	985.498129	0.32219	0.00015908	0.49875	0.00024626	0.82094	0.00040534	493.75646905796407	21.679	0.45658	21.63	21.373	21.83	-0.049377	-0.016797	5.6378E-06	NaN	5.2307	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77316	+		30607	14129	17743	17744							0.004800166119593996
NKVFSDHLW	9	Unmodified	_NKVFSDHLW_					0	0	0			REV__ENST00000601728.1_1_19:23310047-23310578:-|nuORF	REV__ENST00000601728.1_1_19:23310047-23310578:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.2809448242188	2	573.290548	1144.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.651	1	89.651	89.151	90.151	-0.00080872								0	0	0	0.25499	1	23719	23719		4.756	0.42677	1		+		30608	22635	17744	17745	37697	37697					4.261191793375474E-05
NKVKNGRFIK	10	Unmodified	_NKVKNGRFIK_					0	0	0			REV__nc|ENSG00000077616|Q9Y3Q0-2|NAALAD2	REV__nc|ENSG00000077616|Q9Y3Q0-2|NAALAD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.36962890625	2	602.369664	1202.72478	-0.080137	-4.8272E-05	0.049525	2.9832E-05	-0.030612	-1.8439E-05	602.3697245664678	12.542	0.20277	12.474	12.377	12.579	-0.06806					14	6	3	0	0	0	0.41085	1	157	157		1.4819	0.51963	1	47255	+		30609	13845	17745	17746	37698	37698					0.13152180170868633
NKVNLAELFK	10	Unmodified	_NKVNLAELFK_					0	0	0		nc|ENSG00000126432|P30044-2|PRDX5;nc|ENSG00000126432|P30044-3|PRDX5;ENSG00000126432|ENST00000265462|PRDX5	nc|ENSG00000126432|P30044-2|PRDX5	nc|ENSG00000126432|P30044-2|PRDX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.830322265625	2	588.342781	1174.67101	0.46868	0.00027574	0.2335	0.00013738	0.70218	0.00041312	588.3428836779772	43.474	0.48235	43.558	43.384	43.866	0.083992					35	17	3	0	0	0	0.30872	1	9594	9594		19.362	1.9193	1	541880			30610	3271	17746	17747	37699	37699					0.09065962948488959
NKVQAKPPK	9	Unmodified	_NKVQAKPPK_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.75518798828125	2	505.311284	1008.60801	0.20474	0.00010346	-0.46252	-0.00023372	-0.25778	-0.00013026	505.3109450835897	25.447	0.56075	25.447	25.091	25.652	0					23	18	2	0	0	0	0.25938	1	3999	3999		4.3292	1.7518	1	31675			30611	5093	17747	17748	37700	37700					0.10405441951127159
NKYLAYMESK	10	Unmodified	_NKYLAYMESK_					0	0	0		ENSG00000107077|ENST00000381309|KDM4C;ENST00000489243.5_1_9:6758133-6893415:+|nuORF;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C	ENSG00000107077|ENST00000381309|KDM4C	ENSG00000107077|ENST00000381309|KDM4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.5323791503906	3	416.209396	1245.60636	0.13597	5.6592E-05	-0.031921	-1.3286E-05	0.10405	4.3307E-05	416.2095136203671	40.757	0.53878	40.856	40.479	41.018	0.099407					34	19	2	0	0	0	0.39009	1	8724	8724		2.8433	0	1	224920			30612	2109	17748	17749	37701	37701					-0.006619799198006149
NLAADIVYGI	10	Unmodified	_NLAADIVYGI_					0	0	0			REV__nc|ENSG00000185220|Q6P3X8-2|PGBD2	REV__nc|ENSG00000185220|Q6P3X8-2|PGBD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.800537109375	2	524.787307	1047.56006	0.51418	0.00026983	0.30957	0.00016246	0.82375	0.00043229	524.7876081076562	71.766	0.48907	71.822	71.568	72.057	0.056572					27	17	2	0	0	0	0.21644	1	18227	18227		30.637	5.2372	1	182970	+		30613	18364	17749	17750	37702	37702					0.038183232404207956
NLAARNVL	8	Unmodified	_NLAARNVL_					0	0	0		nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3;ENST00000548709.1_1_12:56490921-56492754:+|nuORF	nc|ENSG00000065361|P21860-4|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2535095214844	2	435.761426	869.5083	-0.20797	-9.0627E-05	-0.17666	-7.6981E-05	-0.38463	-0.00016761	435.7614557442429	26.148	0.53946	26.148	25.9	26.44	0					33	18	2	0	0	0	0.42758	1	4294	4294		13.508	0	1	206180			30614	813	17750	17751	37703	37703					0.0683262433717573
NLAARNVL	8	Unmodified	_NLAARNVL_					0	0	0		nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3;ENST00000548709.1_1_12:56490921-56492754:+|nuORF	nc|ENSG00000065361|P21860-4|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.25335693359375	2	435.761426	869.5083	-0.16886	-7.3583E-05	-0.30487	-0.00013285	-0.47373	-0.00020643	435.76133846178817	26.146	0.53066	26.107	25.902	26.433	-0.038671					34	18	3	0	0	0	0.2705	2	4245	4245;4289		34.187	0	1	192710			30615	813	17750	17751	37704;37705	37704					0.0683262433717573
NLAARNVL	8	Unmodified	_NLAARNVL_					0	0	0		nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3;ENST00000548709.1_1_12:56490921-56492754:+|nuORF	nc|ENSG00000065361|P21860-4|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.25335693359375	2	435.761426	869.5083	-0.058578	-2.5526E-05	-0.38637	-0.00016837	-0.44495	-0.00019389	435.761326909953	26.159	0.61155	26.137	25.945	26.556	-0.022236					38	21	3	0	0	0	0.39956	1	4247	4247		19.439	0	1	175260			30616	813	17750	17751	37706	37706					0.0683262433717573
NLADCQSEVLF	11	Unmodified	_NLADCQSEVLF_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.7552185058594	3	413.528906	1237.56489	0.010278	4.2502E-06	-0.82709	-0.00034203	-0.81681	-0.00033778	413.5287264125693	57.621	0.58012	57.621	57.323	57.904	0					36	20	3	0	0	0	0.32824	1	13884	13884		9.2438	0	1	808210			30617	3610	17751	17752	37707	37707					-0.04439160679135057
NLAGGFINFI	10	Unmodified	_NLAGGFINFI_					0	0	0			REV__Arthur1_dup1196|chr7:125469153-125469343:+|1.2230102942666092|0.0057603240424457|7.73|506.0|3|1|sense	REV__Arthur1_dup1196|chr7:125469153-125469343:+|1.2230102942666092|0.0057603240424457|7.73|506.0|3|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7716674804688	2	533.290017	1064.56548	0.36326	0.00019373	1.2339	0.00065805	1.5972	0.00085177	533.2908231350708	70.25	0.53197	70.316	70.133	70.665	0.066048					29	18	2	0	0	0	0.29038	1	17871	17871		24.021	4.5816	1	234800	+		30618	13115	17752	17753	37708	37708					0.03578046822894976
NLAGGFINFI	10	Unmodified	_NLAGGFINFI_					0	0	0			REV__Arthur1_dup1196|chr7:125469153-125469343:+|1.2230102942666092|0.0057603240424457|7.73|506.0|3|1|sense	REV__Arthur1_dup1196|chr7:125469153-125469343:+|1.2230102942666092|0.0057603240424457|7.73|506.0|3|1|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	533.290017	1064.56548	0.51704	0.00027573	0.60902	0.00032479	1.1261	0.00060052	533.290054971845	70.293	0.4423	70.293	70.131	70.573	0	-0.017907	-0.00036238	NaN	24.021	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226390	+		30619	13115	17752	17753							0.03578046822894976
NLAGGFINFI	10	Unmodified	_NLAGGFINFI_					0	0	0			REV__Arthur1_dup1196|chr7:125469153-125469343:+|1.2230102942666092|0.0057603240424457|7.73|506.0|3|1|sense	REV__Arthur1_dup1196|chr7:125469153-125469343:+|1.2230102942666092|0.0057603240424457|7.73|506.0|3|1|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	533.290017	1064.56548	0.51018	0.00027207	1.019	0.00054342	1.5292	0.0008155	533.2904368610402	70.349	0.47632	70.324	70.134	70.611	-0.024864	0.013203	7.4898E-05	NaN	24.021	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195410	+		30620	13115	17752	17753							0.03578046822894976
NLALISKSGL	10	Unmodified	_NLALISKSGL_					0	0	0		EFCAB5|p.K158Lfs*12|1|0.04|ENSG00000176927|chr17:29969070-29969071|-/TTTGATTT|frameshift_variant	EFCAB5|p.K158Lfs*12|1|0.04|ENSG00000176927|chr17:29969070-29969071|-/TTTGATTT|frameshift_variant	EFCAB5|p.K158Lfs*12|1|0.04|ENSG00000176927|chr17:29969070-29969071|-/TTTGATTT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.3263244628906	2	508.310949	1014.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.39	1	104.39	103.89	104.89	0.0018463								0	0	0	0.35611	1	27727	27727		12.241	2.1667	1				30621	280	17753	17754	37709	37709					0.1006260251143658
NLAPHDKPVPP	11	Unmodified	_NLAPHDKPVPP_					0	0	0			REV__ENST00000585511.5_3_9:85043125-85043209:+|nuORF	REV__ENST00000585511.5_3_9:85043125-85043209:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.31005859375	2	592.824755	1183.63496	0.86882	0.00051506	-0.32003	-0.00018972	0.54878	0.00032533	592.824674071299	50.566	0.30637	50.566	50.407	50.713	0					16	10	2	0	0	0	0.32557	1	11702	11702		15.248	7.093	1	164120	+		30622	14036	17754	17755	37710	37710					0.05048505771651435
NLAPHDKPVPP	11	Unmodified	_NLAPHDKPVPP_					0	0	0			REV__ENST00000585511.5_3_9:85043125-85043209:+|nuORF	REV__ENST00000585511.5_3_9:85043125-85043209:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.31005859375	2	592.824755	1183.63496	0.99119	0.0005876	-0.40438	-0.00023972	0.58681	0.00034788	592.8244892674185	50.562	0.36336	50.607	50.403	50.766	0.044891					20	12	2	0	0	0	0.32557	1	11687	11687		15.248	3.0078	1	153580	+		30623	14036	17754	17755	37711	37711					0.05048505771651435
NLAVNAVIQSG	11	Unmodified	_NLAVNAVIQSG_					0	0	0			REV__nc|ENSG00000084676|Q15788-2|NCOA1	REV__nc|ENSG00000084676|Q15788-2|NCOA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.287353515625	2	543.301113	1084.58767	0.69729	0.00037884	-1.2544	-0.00068153	-0.55712	-0.00030269	543.3001226418006	45.134	0.617	45.209	44.988	45.605	0.07505					47	22	3	0	0	0	0.40332	1	10104	10104		10.8	1.4521	1	481780	+		30624	13951	17755	17756	37712	37712					0.04876226500641678
NLDEHLGDML	10	Unmodified	_NLDEHLGDML_					0	0	0			REV__ENSG00000138592|ENST00000307179|USP8	REV__ENSG00000138592|ENST00000307179|USP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3058471679688	2	578.768788	1155.52302	0.52784	0.0003055	0.10229	5.9201E-05	0.63013	0.0003647	578.7689181865788	54.637	0.66784	54.621	54.282	54.95	-0.015923					36	23	2	0	0	0	0.31358	1	12914	12914		9.3831	0	1	368020	+		30625	15932	17756	17757	37713	37713					-0.04851716367647896
NLDEHQMY	8	Unmodified	_NLDEHQMY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8056640625	2	525.221474	1048.42839	0.60136	0.00031585	-0.10977	-5.7651E-05	0.49159	0.00025819	525.2212203366944	63.489	0.45714	63.585	63.445	63.902	0.095722					19	15	2	0	0	0	0.34247	1	15772	15772		8.5933	3.8373	1	182070			30626	5186	17757	17758	37714	37714					-0.09388230118975116
NLDEKSTIF	9	Unmodified	_NLDEKSTIF_					0	0	0			REV__ENST00000589009.5_1_19:10227257-10229639:-|nuORF	REV__ENST00000589009.5_1_19:10227257-10229639:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.3163452148438	2	533.774396	1065.53424	0.24802	0.00013238	1.5619	0.0008337	1.8099	0.00096608	534.2770230556712	60.235	0.29286	60.224	60.085	60.378	-0.011486					20	10	3	0	0	0	0.24311	1	14732	14732		16.942	0	1	366920	+		30627	15480	17758	17759	37715	37715					0.004094289981367183
NLDEKSTIF	9	Unmodified	_NLDEKSTIF_					0	0	0			REV__ENST00000589009.5_1_19:10227257-10229639:-|nuORF	REV__ENST00000589009.5_1_19:10227257-10229639:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	533.774396	1065.53424	0.1268	6.7684E-05	1.1136	0.00059443	1.2404	0.00066211	533.7749163707213	60.199	0.23335	60.199	60.126	60.359	0	-0.012268	-0.00012173	NaN	16.942	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293860	+		30628	15480	17758	17759							0.004094289981367183
NLELQTIFF	9	Unmodified	_NLELQTIFF_					0	0	0		ENSG00000181718|ENST00000641661|OR5T2;nc|ENSG00000181718|Q8NGG2|OR5T2	ENSG00000181718|ENST00000641661|OR5T2	ENSG00000181718|ENST00000641661|OR5T2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3427124023438	2	562.802957	1123.59136	0.55282	0.00031113	0.81248	0.00045726	1.3653	0.00076839	563.3055373401114	83.571	0.6606	83.571	83.174	83.835	0					47	24	3	0	0	0	0.24739	1	21862	21862		13.508	4.9146	1	95566			30629	7243	17759	17760	37716	37716					0.03450896274512161
NLEYHSSGTL	10	Unmodified	_NLEYHSSGTL_					0	0	0		nc|ENSG00000143847|O75335|PPFIA4	nc|ENSG00000143847|O75335|PPFIA4	nc|ENSG00000143847|O75335|PPFIA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.287841796875	2	560.767103	1119.51965	0.41924	0.0002351	-2.3446	-0.0013148	-1.9254	-0.0010797	561.2673810291942	47.328	0.38258	47.38	47.243	47.626	0.052574					17	13	2	0	0	0	0.31267	1	10737	10737		6.2058	0	1	141950			30630	12735	17760	17761	37717	37717					-0.03532643149969772
NLFMSLNK	8	Unmodified	_NLFMSLNK_					0	0	0		nc|ENSG00000068028|Q9NS23-4|RASSF1;ENSG00000068028|ENST00000359365|RASSF1;nc|ENSG00000068028|Q9NS23|RASSF1;nc|ENSG00000068028|Q9NS23-5|RASSF1	nc|ENSG00000068028|Q9NS23-4|RASSF1	nc|ENSG00000068028|Q9NS23-4|RASSF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.23822021484375	2	483.757495	965.500437	0.004539	2.1958E-06	-0.90052	-0.00043563	-0.89598	-0.00043344	483.7566509988967	27.527	0.40767	27.527	27.324	27.732	0					27	13	3	0	0	0	0.33293	1	4658	4658		14.838	3.198	1	103410			30631	874	17761	17762	37718	37718					0.01630729025407618
NLFVSSGAL	9	Unmodified	_NLFVSSGAL_					0	0	0			REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1	REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.28436279296875	2	454.247818	906.481082	0.40247	0.00018282	-0.14133	-6.4199E-05	0.26113	0.00011862	454.2478508026115	32.016	0.53404	32.059	31.823	32.357	0.042366					29	18	2	0	0	0	0.2322	1	6087	6087		20.454	6.5476	1	241090	+		30632	15067	17762	17763	37719	37719					0.024100960061559817
NLGGFFFFF	9	Unmodified	_NLGGFFFFF_					0	0	0		ENST00000460006.5_1_20:5177814-5177943:+|nuORF	ENST00000460006.5_1_20:5177814-5177943:+|nuORF	ENST00000460006.5_1_20:5177814-5177943:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7928466796875	2	548.268553	1094.52255	0.34166	0.00018732	0.25475	0.00013967	0.59641	0.00032699	548.2686533037444	46.579	0.71713	46.634	46.11	46.827	0.054371					28	25	2	0	0	0	0.24739	1	10531	10531		8.5933	0	1	295530			30633	10719	17763	17764	37720	37720					-0.02092723234522964
NLGNVVHIERF	11	Unmodified	_NLGNVVHIERF_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.9295959472656	3	433.238566	1296.69387	0.011924	5.1659E-06	0.27449	0.00011892	0.28641	0.00012408	433.238807937654	32.806	0.50103	32.861	32.59	33.091	0.055309					28	17	2	0	0	0	0.33146	1	6224	6224		6.6235	0.3891	1	209970			30634	5705	17764	17765	37721	37721					0.057389820659636825
NLGRLENSP	9	Unmodified	_NLGRLENSP_					0	0	0			REV__ENSG00000006634|ENST00000265728|DBF4	REV__ENSG00000006634|ENST00000265728|DBF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3135986328125	2	500.26453	998.514508	0.16404	8.2064E-05	-0.21925	-0.00010968	-0.05521	-2.762E-05	500.26430974864957	24.519	0.68688	24.481	24.196	24.883	-0.038927					44	23	3	0	0	0	0.25202	1	3815	3815		10.824	2.2306	1	140640	+		30635	13367	17765	17766	37722	37722					0.015190977780321191
NLGRQVLNE	9	Unmodified	_NLGRQVLNE_					0	0	0			REV__ENST00000433510.2_1_17:46713640-46724167:-|nuORF	REV__ENST00000433510.2_1_17:46713640-46724167:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3321533203125	2	521.78563	1041.55671	0.053225	2.7772E-05	0.75629	0.00039462	0.80951	0.00042239	521.7859253510281	14.003	0.59772	13.937	13.802	14.4	-0.066068					26	20	2	0	0	0	0.25988	1	566	566		3.9444	1.3669	1	348930	+		30636	20969	17766	17767	37723	37723					0.037590731864384
NLGTGKFLSMR	11	Unmodified	_NLGTGKFLSMR_					0	0	0			REV__ENST00000306065.8_1_19:33137490-33140595:-|nuORF	REV__ENST00000306065.8_1_19:33137490-33140595:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.5564880371094	3	408.557019	1222.64923	0.13603	5.5574E-05	-0.32471	-0.00013266	-0.18868	-7.7089E-05	408.5568217196725	21.689	0.69958	21.589	21.244	21.943	-0.10034					57	24	3	0	0	0	0.47633	1	2886	2886		1.2148	0	1	285320	+		30637	19857	17767	17768	37724	37724					0.046808349282628114
NLHHGIHIL	9	Unmodified	_NLHHGIHIL_					0	0	0			REV__ENSG00000128052|ENST00000263923|KDR	REV__ENSG00000128052|ENST00000263923|KDR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7828369140625	2	527.30125	1052.58795	0.60715	0.00032015	-2.1434	-0.0011302	-1.5363	-0.00081008	527.2997714871772	89.658	0.47363	89.657	89.387	89.861	-0.00080872					67	38	2	0	0	0	0.25879	1	23680	23680		4.756	0.42677	1	171940	+		30638	15362	17768	17769	37725	37725					0.06375691011180606
NLHHGIHIL	9	Unmodified	_NLHHGIHIL_					0	0	0			REV__ENSG00000128052|ENST00000263923|KDR	REV__ENSG00000128052|ENST00000263923|KDR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	527.30125	1052.58795	0.50989	0.00026886	-1.5572	-0.00082112	-1.0473	-0.00055225	527.3000311181368	89.545	0.28852	89.636	89.465	89.754	0.090561	-0.010732	0.00042522	NaN	4.756	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99410	+		30639	15362	17768	17769							0.06375691011180606
NLHLLGSN	8	Unmodified	_NLHLLGSN_					0	0	0		ENST00000557192.1_1_14:58896136-58899908:+|nuORF	ENST00000557192.1_1_14:58896136-58899908:+|nuORF	ENST00000557192.1_1_14:58896136-58899908:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.23828125	2	434.237784	866.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.81	1	76.864	76.364	77.364	0.053413								0	0	0	0.36336	1	19789	19789		8.5933	0	1				30640	11867	17769	17770	37726	37726					0.02244345066196729
NLIHIVVVKLV	11	Unmodified	_NLIHIVVVKLV_					0	0	0		ENSG00000173157|ENST00000389420|ADAMTS20;nc|ENSG00000173157|P59510|ADAMTS20;nc|ENSG00000173157|P59510-2|ADAMTS20	ENSG00000173157|ENST00000389420|ADAMTS20	ENSG00000173157|ENST00000389420|ADAMTS20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.916259765625	2	623.915916	1245.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.36	1	104.36	103.86	104.86	0.0011444								0	0	0	0.38203	1	27740	27740		0.30703	0.30703	1				30641	6696	17770	17771	37727	37727					0.20420265184407072
NLIRNRNL	8	Unmodified	_NLIRNRNL_					0	0	0		ENST00000567435.5_1_15:74744692-74748982:-|nuORF	ENST00000567435.5_1_15:74744692-74748982:-|nuORF	ENST00000567435.5_1_15:74744692-74748982:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3247985839844	2	506.804157	1011.59376	0.69981	0.00035467	2.0717	0.00105	2.7715	0.0014046	506.8053746260308	45.792	0.44408	45.792	45.501	45.945	0					25	15	2	0	0	0	0.34092	1	10191	10191		13.508	0.97634	1	226600			30642	11993	17771	17772	37728	37728					0.08842789522839212
NLIRNRNL	8	Unmodified	_NLIRNRNL_					0	0	0		ENST00000567435.5_1_15:74744692-74748982:-|nuORF	ENST00000567435.5_1_15:74744692-74748982:-|nuORF	ENST00000567435.5_1_15:74744692-74748982:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	506.804157	1011.59376	0.38812	0.0001967	1.8588	0.00094205	2.2469	0.0011387	506.8052101414982	45.656	0.50333	45.716	45.448	45.951	0.059834	-0.0082023	-5.686E-05	NaN	13.508	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208770			30643	11993	17771	17772							0.08842789522839212
NLIRNRNL	8	Unmodified	_NLIRNRNL_					0	0	0		ENST00000567435.5_1_15:74744692-74748982:-|nuORF	ENST00000567435.5_1_15:74744692-74748982:-|nuORF	ENST00000567435.5_1_15:74744692-74748982:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.804157	1011.59376	0.44292	0.00022447	1.7475	0.00088565	2.1904	0.0011101	506.8053412727414	45.599	0.72649	45.664	45.173	45.9	0.065048	-0.059811	-0.00016967	NaN	13.508	40	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217890			30644	11993	17771	17772							0.08842789522839212
NLIWQGDLAF	10	Unmodified	_NLIWQGDLAF_					0	0	0			REV__ENSG00000012174|ENST00000379484|MBTPS2	REV__ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3223266601562	2	588.806031	1175.59751	0.43157	0.00025411	-0.057929	-3.4109E-05	0.37364	0.00022	588.8058131191466	58.728	0.91135	58.728	58.468	59.38	0					100	31	4	0	0	0	0.31867	1	14420	14420		18.146	1.0335	1	4620900	+		30645	13439	17772	17773	37729	37729					0.01673414506035442
NLKAQQRR	8	Unmodified	_NLKAQQRR_					0	0	0			REV__ENST00000567134.5_1_15:75899626-75901960:-|nuORF	REV__ENST00000567134.5_1_15:75899626-75901960:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.30316162109375	2	507.301781	1012.58901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.855	1	41.855	41.355	42.355	0								0	0	0	0.35251	1	9059	9059		13.508	0.46542	1		+		30646	22377	17773	17774	37730	37730					0.08321905380091721
NLKATRQP	8	Unmodified	_NLKATRQP_					0	0	0			REV__ENSG00000120942|ENST00000376810|UBIAD1	REV__ENSG00000120942|ENST00000376810|UBIAD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7872009277344	2	464.272158	926.529764	0.37785	0.00017542	-0.67157	-0.00031179	-0.29373	-0.00013637	464.2717390523572	77.626	0.84499	77.681	77.378	78.223	0.055412					55	30	2	0	0	0	0.34218	1	19945	19945		5.2307	0	1	216790	+		30647	15104	17774	17775	37731	37731					0.06356009365890714
NLKATRQP	8	Unmodified	_NLKATRQP_					0	0	0			REV__ENSG00000120942|ENST00000376810|UBIAD1	REV__ENSG00000120942|ENST00000376810|UBIAD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.78717041015625	2	464.272158	926.529764	0.67724	0.00031443	-1.0047	-0.00046646	-0.32748	-0.00015204	464.27170922108036	77.676	0.88177	77.645	77.287	78.169	-0.031334					55	31	2	0	0	0	0.34218	1	19953	19953		9.3474	0	1	223070	+		30648	15104	17774	17775	37732	37732					0.06356009365890714
NLKDEYVRT	9	Unmodified	_NLKDEYVRT_					0	0	0		nc|ENSG00000144747|P82094-2|TMF1;ENSG00000144747|ENST00000398559|TMF1	nc|ENSG00000144747|P82094-2|TMF1	nc|ENSG00000144747|P82094-2|TMF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8194580078125	2	569.29857	1136.58259	0.48492	0.00027607	1.7358	0.00098821	2.2208	0.0012643	569.2998907647454	45.636	0.14057	45.696	45.593	45.734	0.059834					6	4	2	0	0	0	0.25123	1	10197	10197		12.241	4.0851	1	122680			30649	4611	17775	17776	37733	37733					0.019759226380301698
NLKDPDMH	8	Unmodified	_NLKDPDMH_					0	0	0			REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.23382568359375	2	485.226559	968.438566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.507	1	25.451	24.951	25.951	-0.055931								0	0	0	0.37078	1	4076	4076		5.2307	0	1		+		30650	16163	17776	17777	37734	37734					-0.04691622393738726
NLKDPDMH	8	Unmodified	_NLKDPDMH_					0	0	0			REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.23382568359375	2	485.226559	968.438566	0.013747	6.6702E-06	-1.0101	-0.00049012	-0.99634	-0.00048345	485.2256061265286	25.304	0.56618	25.248	24.972	25.539	-0.055931					27	19	2	0	0	0	0.34337	1	4076	4076		5.2307	0	1	101410	+		30651	16163	17776	17777	37735	37735					-0.04691622393738726
NLKETLKS	8	Unmodified	_NLKETLKS_					0	0	0		nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7740173339844	2	466.7742	931.533846	-0.012225	-5.7064E-06	-0.53468	-0.00024957	-0.5469	-0.00025528	466.77378111085534	17.126	0.6415	17.126	16.895	17.537	0					37	22	2	0	0	0	0.4396	1	1570	1570		9.3831	0.63772	1	117350			30652	12858	17777	17778	37736	37736					0.06534054068958994
NLKFKKDHF	9	Unmodified	_NLKFKKDHF_					0	0	0			REV__ENSG00000089048|ENST00000617257|ESF1	REV__ENSG00000089048|ENST00000617257|ESF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8300170898438	2	588.82984	1175.64513	0.38297	0.0002255	-0.059929	-3.5288E-05	0.32304	0.00019021	588.8297869378292	67.749	0.64523	67.749	67.479	68.124	0					51	22	3	0	0	0	0.24289	1	17082	17082		18.146	0	1	536000	+		30653	14021	17778	17779	37737	37737					0.0643311349688247
NLKHSRVT	8	Unmodified	_NLKHSRVT_					0	0	0		ENSG00000115232|ENST00000397033|ITGA4;ENST00000476824.1_1_2:182363351-182392165:+|nuORF	ENSG00000115232|ENST00000397033|ITGA4	ENSG00000115232|ENST00000397033|ITGA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.3004455566406	2	477.777608	953.540663	-0.010117	-4.8337E-06	0.22569	0.00010783	0.21557	0.000103	477.77756743410885	23.519	0.75061	23.519	23.278	24.029	0					41	25	2	0	0	0	0.3366	1	3598	3598		18.135	0	1	122170			30654	2620	17779	17780	37738	37738					0.06203411740193587
NLKHYIIW	8	Unmodified	_NLKHYIIW_					0	0	0		ENST00000549041.1_1_12:51634351-51634513:+|nuORF	ENST00000549041.1_1_12:51634351-51634513:+|nuORF	ENST00000549041.1_1_12:51634351-51634513:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2799682617188	2	543.808377	1085.6022	0.47016	0.00025567	0.90977	0.00049474	1.3799	0.00075042	543.8086349124912	68.134	1.1972	68.134	67.809	69.006	0					66	43	2	0	0	0	0.34247	1	17089	17089		8.5933	8.5933	1	2006000			30655	11782	17780	17781	37739	37739					0.06282343439465876
NLKKEKEMLK	10	Unmodified	_NLKKEKEMLK_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.E1017Rfs*5|1|0.04|ENSG00000047410|chr1:186346182-186346183|-/G|frameshift_variant;ENST00000469463.1_1_1:186321098-186322975:-|nuORF	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.8715209960938	2	630.870848	1259.72714	0.49427	0.00031182	0.37891	0.00023905	0.87319	0.00055087	630.8710216546284	59.381	0.6557	59.367	58.86	59.515	-0.014271					32	22	2	0	0	0	0.37454	1	14458	14458		8.1555	0.54658	1	292170			30656	631	17781	17782	37740	37740					0.10766847793684065
NLKKEKEMLK	10	Unmodified	_NLKKEKEMLK_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.E1017Rfs*5|1|0.04|ENSG00000047410|chr1:186346182-186346183|-/G|frameshift_variant;ENST00000469463.1_1_1:186321098-186322975:-|nuORF	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	630.870848	1259.72714	0.26828	0.00016925	0.67253	0.00042428	0.94081	0.00059353	631.3729218409114	59.12	0.66903	59.12	58.891	59.56	0	-0.12226	0.00014433	NaN	8.1555	32	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371570			30657	631	17781	17782							0.10766847793684065
NLKKEKEMLK	10	Unmodified	_NLKKEKEMLK_					0	0	0		ENSG00000047410|ENST00000367478|TPR;TPR|p.E1017Rfs*5|1|0.04|ENSG00000047410|chr1:186346182-186346183|-/G|frameshift_variant;ENST00000469463.1_1_1:186321098-186322975:-|nuORF	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	630.870848	1259.72714	0.26958	0.00017007	0.6391	0.00040319	0.90868	0.00057326	630.8711983949435	59.148	0.72058	59.24	58.74	59.46	0.091301	-0.0024983	0.00010215	NaN	8.1555	53	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227040			30658	631	17781	17782							0.10766847793684065
NLLKLKASF	9	Unmodified	_NLLKLKASF_					0	0	0		nc|ENSG00000146857|Q7Z7C7|STRA8;ENSG00000146857|ENST00000662584|STRA8	nc|ENSG00000146857|Q7Z7C7|STRA8	nc|ENSG00000146857|Q7Z7C7|STRA8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8159790039062	2	517.32386	1032.63317	0.3008	0.00015561	-0.085406	-4.4183E-05	0.21539	0.00011143	517.3237280181576	49.171	1.2819	49.216	48.878	50.16	0.044891					67	47	2	0	0	0	0.25202	1	11212	11212		6.7232	0	1	331120			30659	4733	17782	17783	37741	37741					0.11815496753706611
NLLLDHTQPDF	11	Unmodified	_NLLLDHTQPDF_					0	0	0			REV__ENSG00000113211|ENST00000231136|PCDHB6	REV__ENSG00000113211|ENST00000231136|PCDHB6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.24871826171875	3	438.222582	1311.64592	0.083933	3.6781E-05	1.8778	0.0008229	1.9618	0.00085968	438.2236481111985	24.123	0.71096	24.085	23.681	24.392	-0.038927					63	24	4	0	0	0	0.3331	1	3671	3671		2.2527	0.51045	1	102410	+		30660	14797	17783	17784	37742	37742					0.0025586335527805204
NLLRNYRK	8	Unmodified	_NLLRNYRK_					0	0	0		nc|ENSG00000121903|P17040-4|ZSCAN20;nc|ENSG00000121903|P17040-2|ZSCAN20;nc|ENSG00000121903|P17040-3|ZSCAN20;ENSG00000121903|ENST00000684572|ZSCAN20	nc|ENSG00000121903|P17040-4|ZSCAN20	nc|ENSG00000121903|P17040-4|ZSCAN20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2727661132812	2	538.819807	1075.62506	0.39045	0.00021038	-1.0425	-0.00056173	-0.65206	-0.00035134	538.8192188160357	17.946	0.2218	17.946	17.802	18.024	0					8	6	2	0	0	0	0.34408	1	1789	1789		2.3027	1.6124	1	19607			30661	3019	17784	17785	37743	37743					0.09027362556935259
NLLSKEGKRQI	11	Unmodified	_NLLSKEGKRQI_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	643.3839111328125	2	643.382968	1284.75138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.985	1	48.033	47.533	48.533	0.047523								0	0	0	0.34127	1	10941	10941		10.151	1.995	1				30662	4140	17785	17786	37744	37744					0.12039824271573707
NLLVGHKPLI	10	Unmodified	_NLLVGHKPLI_					0	0	0		MER21A_dup1924|chr21:42596367-42597211:-|1.1454877344273586|0.0472559580865997|4.6|530.0|18|3|sense	MER21A_dup1924|chr21:42596367-42597211:-|1.1454877344273586|0.0472559580865997|4.6|530.0|18|3|sense	MER21A_dup1924|chr21:42596367-42597211:-|1.1454877344273586|0.0472559580865997|4.6|530.0|18|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.25537109375	2	552.350409	1102.68626	0.54775	0.00030255	-0.20884	-0.00011535	0.3389	0.00018719	552.350086458484	64.188	0.51756	64.281	64.012	64.53	0.09288					33	18	2	0	0	0	0.31267	1	15854	15854		14.838	6.0929	1	170890			30663	12526	17786	17787	37745	37745					0.1390287453637029
NLMIDKVF	8	Unmodified	_NLMIDKVF_					0	0	0			REV__ENSG00000102245|ENST00000370629|CD40LG	REV__ENSG00000102245|ENST00000370629|CD40LG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.26617431640625	2	490.267696	978.520839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.786	1	73.838	73.338	74.338	0.052361								0	0	0	0.35251	1	18868	18868		13.508	0	1		+		30664	14314	17787	17788	37746	37746					0.03071899685221524
NLMIDKVF	8	Unmodified	_NLMIDKVF_					0	0	0			REV__ENSG00000102245|ENST00000370629|CD40LG	REV__ENSG00000102245|ENST00000370629|CD40LG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2681579589844	2	490.267696	978.520839	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.818	1	73.871	73.371	74.371	0.052361								0	0	0	0.35251	1	18877	18877		13.508	0	1		+		30665	14314	17787	17788	37747	37747					0.03071899685221524
NLMIDKVF	8	Unmodified	_NLMIDKVF_					0	0	0			REV__ENSG00000102245|ENST00000370629|CD40LG	REV__ENSG00000102245|ENST00000370629|CD40LG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2684020996094	2	490.267696	978.520839	0.31762	0.00015572	-1.4387	-0.00070537	-1.1211	-0.00054965	490.2661223420262	73.936	1.8586	73.905	72.226	74.085	-0.030663					87	66	2	0	0	0	0.42758	1	18868	18868		13.508	0	1	332220	+		30666	14314	17787	17788	37748	37748					0.03071899685221524
NLMLPIFTT	9	Unmodified	_NLMLPIFTT_					0	0	0			REV__ENST00000547226.5_1_12:56711395-56716647:-|nuORF	REV__ENST00000547226.5_1_12:56711395-56716647:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3051147460938	2	525.288628	1048.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.257	1	86.341	85.841	86.841	0.084251								0	0	0	0.21726	1	22686	22686		16.942	4.4107	1		+		30667	15744	17788	17789	37749	37749					0.04036455373739045
NLNINQTLSR	10	Unmodified	_NLNINQTLSR_					0	0	0		ENST00000361548.8_1_1:24645886-24657935:+|nuORF	ENST00000361548.8_1_1:24645886-24657935:+|nuORF	ENST00000361548.8_1_1:24645886-24657935:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.82373046875	2	586.822744	1171.63093	-0.056696	-3.3271E-05	1.236	0.00072532	1.1793	0.00069205	586.8232350670949	104.28	0.18437	104.28	104.17	104.36	0					39	24	2	0	0	0	0.40106	1	27691	27691		3.2813	0.28607	1	173170			30668	9693	17789	17790	37750	37750					0.05198416277949036
NLNINQTLSR	10	Unmodified	_NLNINQTLSR_					0	0	0		ENST00000361548.8_1_1:24645886-24657935:+|nuORF	ENST00000361548.8_1_1:24645886-24657935:+|nuORF	ENST00000361548.8_1_1:24645886-24657935:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.822509765625	2	586.822744	1171.63093	0.068832	4.0392E-05	1.2307	0.00072222	1.2996	0.00076261	586.8232390961074	104.06	0.15791	104.07	104.03	104.19	0.0082703					33	21	2	0	0	0	0.38515	1	27650	27650		6.2058	0.47393	1	263980			30669	9693	17789	17790	37751	37751					0.05198416277949036
NLNKILQVF	9	Unmodified	_NLNKILQVF_					0	0	0		ENST00000469098.1_1_2:37594344-37599967:+|nuORF;nc|ENSG00000115828|Q16769-2|QPCT;ENSG00000115828|ENST00000338415|QPCT	ENST00000469098.1_1_2:37594344-37599967:+|nuORF	ENST00000469098.1_1_2:37594344-37599967:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3160400390625	2	544.826766	1087.63898	0.7351	0.0004005	-3.0801	-0.0016781	-2.345	-0.0012776	544.8245746547649	90.476	0.45599	90.477	90.222	90.678	0.0003891					46	29	2	0	0	0	0.30623	1	23942	23942		7.9102	1.187	1	108900			30670	2680	17790	17791	37752	37752					0.09866595265384603
NLNKILQVF	9	Unmodified	_NLNKILQVF_					0	0	0		ENST00000469098.1_1_2:37594344-37599967:+|nuORF;nc|ENSG00000115828|Q16769-2|QPCT;ENSG00000115828|ENST00000338415|QPCT	ENST00000469098.1_1_2:37594344-37599967:+|nuORF	ENST00000469098.1_1_2:37594344-37599967:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.826766	1087.63898	0.64213	0.00034985	-3.2454	-0.0017682	-2.6033	-0.0014183	544.8247116559444	90.324	0.38786	90.415	90.21	90.598	0.090668	-0.042979	-0.00012981	NaN	7.9102	38	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118210			30671	2680	17790	17791							0.09866595265384603
NLNNLILLI	9	Unmodified	_NLNNLILLI_					0	0	0		ENST00000337198.9_1_8:103840630-103840747:-|nuORF	ENST00000337198.9_1_8:103840630-103840747:-|nuORF	ENST00000337198.9_1_8:103840630-103840747:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.30078125	2	520.329142	1038.64373	0.47335	0.0002463	-0.57786	-0.00030068	-0.10451	-5.4382E-05	520.3292025894538	63.26	1.8097	63.26	62.187	63.997	0					120	66	3	0	0	0	0.2451	1	15841	15841		15.847	0	1	2207800			30672	9492	17791	17792	37753	37753					0.12595479408150823
NLNPLKIK	8	Unmodified	_NLNPLKIK_					0	0	0		ENST00000445741.5_1_8:119391914-119593084:-|nuORF	ENST00000445741.5_1_8:119391914-119593084:-|nuORF	ENST00000445741.5_1_8:119391914-119593084:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.71978759765625	2	470.302927	938.591301	0.14864	6.9905E-05	-0.021067	-9.9077E-06	0.12757	5.9997E-05	470.3029302906176	59.007	0.3868	59.098	58.875	59.262	0.091301					22	13	2	0	0	0	0.34247	1	14286	14286		8.5933	0	1	185290			30673	10588	17792	17793	37754	37754					0.11954941065164348
NLQECDWRF	9	Unmodified	_NLQECDWRF_					0	0	0		ENST00000316623.9_1_15:48726843-48726882:-|nuORF	ENST00000316623.9_1_15:48726843-48726882:-|nuORF	ENST00000316623.9_1_15:48726843-48726882:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.2993774414062	2	605.769123	1209.52369	0.33637	0.00020376	-2.913	-0.0017646	-2.5766	-0.0015608	606.2673215094228	73.477	0.48402	73.448	73.209	73.693	-0.029305					18	17	2	0	0	0	0.25431	1	18835	18835		9.3831	6.1018	1	46775			30674	9359	17793	17794	37755	37755					-0.07268876927946621
NLQEQLSEVQ	10	Unmodified	_NLQEQLSEVQ_					0	0	0			REV__ENSG00000100815|ENST00000267622|TRIP11	REV__ENSG00000100815|ENST00000267622|TRIP11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2765502929688	2	594.298767	1186.58298	0.5821	0.00034594	-2.2057	-0.0013109	-1.6236	-0.00096493	594.2974289235626	35.871	0.52148	35.957	35.698	36.22	0.08625					24	18	2	0	0	0	0.31267	1	7270	7270		14.838	4.7643	1	182520	+		30675	14232	17794	17795	37756	37756					-0.002847024327593317
NLQKHKQWAH	10	Unmodified	_NLQKHKQWAH_					0	0	0			REV__ENSG00000138592|ENST00000307179|USP8	REV__ENSG00000138592|ENST00000307179|USP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	645.8250122070312	2	645.34672	1288.67889	0.14978	9.6657E-05	1.9434	0.0012542	2.0932	0.0013508	645.3479446108821	15.333	0.34369	15.333	15.154	15.498	0					17	11	2	0	0	0	0.32132	1	970	970		1.4819	0.15237	1	50905	+		30676	15932	17795	17796	37757	37757					0.046095349886627446
NLQLQITHL	9	Unmodified	_NLQLQITHL_					0	0	0		ENST00000222511.10_1_7:90001512-90003627:+|nuORF	ENST00000222511.10_1_7:90001512-90003627:+|nuORF	ENST00000222511.10_1_7:90001512-90003627:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8370361328125	2	540.314023	1078.61349	0.094069	5.0827E-05	-0.12127	-6.5525E-05	-0.027203	-1.4698E-05	540.3138372195657	13.916	0.24836	13.812	13.713	13.961	-0.10466					10	8	2	0	0	0	0.26145	1	601	601		2.0598	0	1	15239			30677	8837	17796	17797	37758	37758					0.07733120742932442
NLQLQITHL	9	Unmodified	_NLQLQITHL_					0	0	0		ENST00000222511.10_1_7:90001512-90003627:+|nuORF	ENST00000222511.10_1_7:90001512-90003627:+|nuORF	ENST00000222511.10_1_7:90001512-90003627:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	540.314023	1078.61349	0.15415	8.3287E-05	0.92962	0.00050229	1.0838	0.00058557	540.8166567113625	13.834	0.16521	13.834	13.767	13.932	0	0.011028	0.00069057	NaN	2.0598	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16756			30678	8837	17796	17797							0.07733120742932442
NLQLRHNF	8	Unmodified	_NLQLRHNF_					0	0	0			REV__nc|ENSG00000197808|Q8TAF7-2|ZNF461	REV__nc|ENSG00000197808|Q8TAF7-2|ZNF461	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7562866210938	2	521.283057	1040.55156	0.41352	0.00021556	-4.1135	-0.0021443	-3.7	-0.0019287	521.2795875702849	81.597	0.19857	81.597	81.455	81.653	0					11	7	2	0	0	0	0.33245	1	21224	21224		19.439	6.9074	1	80858	+		30679	18768	17797	17798	37759	37759					0.03290814114461682
NLQRPKKTI	9	Unmodified	_NLQRPKKTI_					0	0	0		ENSG00000177476|ENST00000320002|OR2G3	ENSG00000177476|ENST00000320002|OR2G3	ENSG00000177476|ENST00000320002|OR2G3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3250122070312	2	549.343115	1096.67168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.619	1	25.619	25.119	26.119	0								0	0	0	0.25631	1	4105	4105		4.3292	0	1				30680	6990	17798	17799	37760	37760					0.12720802388230368
NLQRTKVRY	9	Unmodified	_NLQRTKVRY_					0	0	0		ENSG00000131686|ENST00000377443|CA6;nc|ENSG00000131686|P23280-2|CA6	ENSG00000131686|ENST00000377443|CA6	ENSG00000131686|ENST00000377443|CA6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3436889648438	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.72	1	117.72	117.22	118.22	0								0	0	0	0.2672	1	30432	30432		0.52476	0	1				30681	3581	17799	17800	37761	37761					0.09147016757151505
NLQVEYEQL	9	Unmodified	_NLQVEYEQL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-4|UTRN;nc|ENSG00000152818|P46939-3|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2845458984375	2	568.285128	1134.5557	0.049326	2.8031E-05	-0.63343	-0.00035997	-0.5841	-0.00033194	568.2846859599509	27.392	0.70658	27.381	27.101	27.808	-0.01156					58	24	4	0	0	0	0.14786	1	4655	4655		31.268	0	1	739360			30682	5043	17800	17801	37762	37762					-0.006191859731416116
NLQVEYEQL	9	Unmodified	_NLQVEYEQL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;nc|ENSG00000152818|P46939-4|UTRN;nc|ENSG00000152818|P46939-3|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	568.285128	1134.5557	0.1547	8.7916E-05	-0.67599	-0.00038416	-0.52129	-0.00029624	568.2846094313439	27.367	0.7048	27.346	27.1	27.805	-0.021412	-0.020345	-3.6949E-06	NaN	31.268	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	668470			30683	5043	17800	17801							-0.006191859731416116
NLQVQLQFK	9	Unmodified	_NLQVQLQFK_					0	0	0			REV__ENST00000014930.8_1_12:13128049-13128217:-|nuORF	REV__ENST00000014930.8_1_12:13128049-13128217:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.7542114257812	2	559.321848	1116.62914	0.46595	0.00026062	3.1327	0.0017522	3.5987	0.0020128	559.323115755916	67.647	0.65086	67.725	67.213	67.864	0.078049					41	22	3	0	0	0	0.2322	1	16960	16960		14.838	1.7958	1	232980	+		30684	19376	17801	17802	37763	37763					0.07549407259989493
NLRALHIKF	9	Unmodified	_NLRALHIKF_					0	0	0		ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.293212890625	2	556.340375	1110.6662	0.63695	0.00035436	-0.78999	-0.0004395	-0.15304	-8.5142E-05	556.3396694282102	54.947	0.31852	54.931	54.765	55.083	-0.015919					17	11	2	0	0	0	0.24311	1	13059	13059		3.9444	0	1	218210			30685	3997	17802	17803	37764	37764					0.11529123596415047
NLRKNHMWFSI	11	Unmodified	_NLRKNHMWFSI_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2705383300781	3	482.587201	1444.73977	0.33649	0.00016238	2.9345	0.0014162	3.271	0.0015785	482.58871368332257	35.831	0.41052	35.913	35.651	36.062	0.082355					23	14	2	0	0	0	0.33146	1	7183	7183		6.6235	0.3891	1	185240			30686	3530	17803	17804	37765	37765					0.03519303976577248
NLRLNLPAI	9	Unmodified	_NLRLNLPAI_					0	0	0			REV__ENST00000260570.7_1_2:27676255-27679405:-|nuORF	REV__ENST00000260570.7_1_2:27676255-27679405:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2611694335938	2	512.319109	1022.62366	0.15857	8.1241E-05	-0.17522	-8.9767E-05	-0.016643	-8.5264E-06	512.3190026534462	25.803	0.73753	25.803	25.504	26.242	0					45	25	2	0	0	0	0.25622	1	4225	4225		7.2892	0	1	97872	+		30687	19581	17804	17805	37766	37766					0.11325728468159468
NLRQKVPV	8	Unmodified	_NLRQKVPV_					0	0	0			REV__ENST00000311534.6_1_9:88889144-88896972:-|nuORF	REV__ENST00000311534.6_1_9:88889144-88896972:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.74786376953125	2	477.298176	952.581799	0.041994	2.0044E-05	2.2953	0.0010955	2.3373	0.0011156	477.29841516260825	26.374	0.7645	26.374	26.106	26.871	0					36	26	2	0	0	0	0.34319	1	4355	4355		5.7604	0	1	53543	+		30688	19901	17805	17806	37767	37767					0.10361172779664685
NLRQKVPV	8	Unmodified	_NLRQKVPV_					0	0	0			REV__ENST00000311534.6_1_9:88889144-88896972:-|nuORF	REV__ENST00000311534.6_1_9:88889144-88896972:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	477.298176	952.581799	0.12134	5.7916E-05	1.6917	0.00080744	1.813	0.00086536	477.2981963050993	26.393	0.41897	26.354	26.1	26.519	-0.038671	-0.010206	-0.00036018	NaN	5.7604	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68373	+		30689	19901	17805	17806							0.10361172779664685
NLRVTFQRRRR	11	Unmodified	_NLRVTFQRRRR_					0	0	0			REV__ENSG00000274180|ENST00000611551|NATD1	REV__ENSG00000274180|ENST00000611551|NATD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.82574462890625	3	501.302675	1500.8862	0.12835	6.4341E-05	0.88591	0.00044411	1.0143	0.00050845	501.3035469313185	99.981	2.1919	100.02	98.865	101.06	0.038994					432	296	3	0	0	0	0.33351	1	26640	26640		0.094841	0	1	669510	+		30690	19323	17806	17807	37768	37768					0.15578742256661826
NLRVTFQRRRR	11	Unmodified	_NLRVTFQRRRR_					0	0	0			REV__ENSG00000274180|ENST00000611551|NATD1	REV__ENSG00000274180|ENST00000611551|NATD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.82586669921875	3	501.302675	1500.8862	0.28425	0.00014249	0.67778	0.00033977	0.96203	0.00048227	501.3035485843564	100.22	1.7514	100.22	99.382	101.13	-0.006897					426	240	3	0	0	0	0.33351	1	26739	26739		0.094841	0.011491	1	523450	+		30691	19323	17806	17807	37769	37769					0.15578742256661826
NLRVTFQRRRR	11	Unmodified	_NLRVTFQRRRR_					0	0	0			REV__ENSG00000274180|ENST00000611551|NATD1	REV__ENSG00000274180|ENST00000611551|NATD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	501.302675	1500.8862	-0.049222	-2.4675E-05	0.69771	0.00034976	0.64849	0.00032509	501.303378401027	100.18	1.6788	100.18	99.296	100.98	0	0.043389	-6.1232E-05	NaN	0.094841	410	227	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	482420	+		30692	19323	17806	17807							0.15578742256661826
NLSEKSLPQ	9	Unmodified	_NLSEKSLPQ_					0	0	0			REV__ENSG00000103740|ENST00000258873|ACSBG1	REV__ENSG00000103740|ENST00000258873|ACSBG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.8006591796875	2	508.274564	1014.53457	0.047956	2.4375E-05	0.2343	0.00011909	0.28226	0.00014346	508.27508286357534	24.693	0.1382	24.662	24.571	24.709	-0.031408					6	4	2	0	0	0	0.25431	1	3835	3835		5.7319	0	1	38772	+		30693	14384	17807	17808	37770	37770					0.027888487180121047
NLSKTMFLP	9	Unmodified	_NLSKTMFLP_					0	0	0		ENST00000549711.5_1_12:112487373-112518932:-|nuORF;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;ENSG00000111300|ENST00000261745|NAA25	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2200317382812	2	525.786253	1049.55795	0.62147	0.00032676	-0.41378	-0.00021756	0.20769	0.0001092	525.7866768474682	21.187	0.42604	21.187	20.942	21.368	0					20	14	2	0	0	0	0.26168	1	2806	2806		1.8442	0	1	44015			30694	2360	17808	17809	37771	37771					0.03515571230991554
NLSKTMFLP	9	Unmodified	_NLSKTMFLP_					0	0	0		ENST00000549711.5_1_12:112487373-112518932:-|nuORF;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;ENSG00000111300|ENST00000261745|NAA25	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	ENST00000549711.5_1_12:112487373-112518932:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	525.786253	1049.55795	0.59889	0.00031489	-0.3522	-0.00018518	0.2467	0.00012971	525.7865454627614	21.191	0.27807	21.138	21.062	21.34	-0.052912	-0.024438	3.154E-05	NaN	1.8442	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41991			30695	2360	17808	17809							0.03515571230991554
NLSLGGKWRQD	11	Unmodified	_NLSLGGKWRQD_					0	0	0			REV__nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	REV__nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.5954895019531	3	425.226438	1272.65748	-0.14477	-6.1561E-05	2.8488	0.0012114	2.704	0.0011498	425.5620713561687	33.177	0.3375	33.232	33.119	33.457	0.054371					14	11	2	0	0	0	0.32367	1	6407	6407		11.065	0	1	96859	+		30696	14182	17809	17810	37772	37772					0.03206105169283546
NLSNTPEPII	10	Unmodified	_NLSNTPEPII_					0	0	0		ENSG00000141431|ENST00000269197|ASXL3	ENSG00000141431|ENST00000269197|ASXL3	ENSG00000141431|ENST00000269197|ASXL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7814331054688	2	549.295496	1096.57644	0.48201	0.00026477	-2.4179	-0.0013281	-1.9359	-0.0010634	549.795669804932	79.441	0.50858	79.441	79.289	79.797	0					29	19	2	0	0	0	0.3144	1	20682	20682		13.042	5.7532	1	90074			30697	4377	17810	17811	37773	37773					0.03201404406536312
NLSYWIIWL	9	Unmodified	_NLSYWIIWL_					0	0	0			REV__ENSG00000263429|ENST00000581851|TMEM238L	REV__ENSG00000263429|ENST00000581851|TMEM238L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.22186279296875	3	403.221853	1206.64373	-0.26667	-0.00010753	-0.51061	-0.00020589	-0.77727	-0.00031341	403.2221057960154	17.818	0.66677	17.757	17.502	18.169	-0.060429					48	23	3	0	0	0	0.25879	1	1747	1747		2.7352	0	1	85977	+		30698	19294	17811	17812	37774	37774					0.04867479408130748
NLTLANLFK	9	Unmodified	_NLTLANLFK_					0	0	0			REV__nc|ENSG00000198130|Q6NVY1-2|HIBCH	REV__nc|ENSG00000198130|Q6NVY1-2|HIBCH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3060913085938	2	517.305667	1032.59678	0.3849	0.00019911	-0.12415	-6.4221E-05	0.26076	0.00013489	517.3056223851987	60.425	0.66595	60.425	60.126	60.792	0					59	24	3	0	0	0	0.069258	1	14796	14796		45.74	1.9675	1	1977000	+		30699	18801	17812	17813	37775	37775					0.08178619856994374
NLTLANLFK	9	Unmodified	_NLTLANLFK_					0	0	0			REV__nc|ENSG00000198130|Q6NVY1-2|HIBCH	REV__nc|ENSG00000198130|Q6NVY1-2|HIBCH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.3054809570312	2	517.305667	1032.59678	0.39377	0.0002037	-0.055349	-2.8632E-05	0.33842	0.00017507	517.3055279073911	60.454	0.7509	60.442	60.085	60.836	-0.011486					61	27	3	0	0	0	0.058995	1	14794	14794		49.554	3.5333	1	1921500	+		30700	18801	17812	17813	37776	37776					0.08178619856994374
NLTRQIEV	8	Unmodified	_NLTRQIEV_					0	0	0			REV__ENST00000475879.1_1_6:132796730-132824669:-|nuORF	REV__ENST00000475879.1_1_6:132796730-132824669:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7772216796875	2	486.777274	971.539994	0.31838	0.00015498	-0.28861	-0.00014049	0.02977	1.4491E-05	486.7771237849589	38.305	1.0617	38.395	38.042	39.104	0.090881					103	38	3	0	0	0	0.18139	1	7987	7987		64.236	0	1	5453800	+		30701	13879	17813	17814	37777	37777					0.053085723004642205
NLTTSRHNF	9	Unmodified	_NLTTSRHNF_					0	0	0		ENSG00000183696|ENST00000395564|UPP1	ENSG00000183696|ENST00000395564|UPP1	ENSG00000183696|ENST00000395564|UPP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7924194335938	2	545.275429	1088.53631	0.60716	0.00033107	-1.5533	-0.00084699	-0.94617	-0.00051592	545.2746804971534	56.468	1.2619	56.468	56.316	57.578	0					87	46	2	0	0	0	0.24311	1	13857	13857		11.64	0	1	490460			30702	7390	17814	17815	37778	37778					-0.004420974733875482
NLVAGFYYHF	10	Unmodified	_NLVAGFYYHF_					0	0	0			REV__ENST00000338051.4_1_5:134191426-134191471:+|nuORF	REV__ENST00000338051.4_1_5:134191426-134191471:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.22723388671875	3	410.869591	1229.58694	0.059276	2.4355E-05	3.1677	0.0013015	3.2269	0.0013259	410.87095977058055	23.816	0.28898	23.743	23.563	23.852	-0.072559					13	9	2	0	0	0	0.31942	1	3586	3586		6.1918	0	1	29319	+		30703	20090	17815	17816	37779	37779					-0.018665681483980734
NLVALVCSGMT	11	Unmodified	_NLVALVCSGMT_					0	0	0		ENST00000447904.5_1_7:131011916-131012072:-|nuORF	ENST00000447904.5_1_7:131011916-131012072:-|nuORF	ENST00000447904.5_1_7:131011916-131012072:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.298095703125	2	554.280477	1106.5464	0.27974	0.00015505	-3.9715	-0.0022013	-3.6918	-0.0020463	554.2787376296378	93.758	0.46633	93.845	93.722	94.188	0.086678					41	35	2	0	0	0	0.42762	1	25046	25046		7.609	0.88579	1	60483			30704	10609	17816	17817	37780	37780					-0.0026099385465840896
NLVALVCSGMT	11	Unmodified	_NLVALVCSGMT_					0	0	0		ENST00000447904.5_1_7:131011916-131012072:-|nuORF	ENST00000447904.5_1_7:131011916-131012072:-|nuORF	ENST00000447904.5_1_7:131011916-131012072:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	554.280477	1106.5464	0.39383	0.00021829	-4.4122	-0.0024456	-4.0183	-0.0022273	554.2783721194091	93.952	0.32282	93.951	93.736	94.059	-0.00050354	0.05326	-0.00016778	NaN	7.609	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73872			30705	10609	17816	17817							-0.0026099385465840896
NLVAWIEEEQ	10	Unmodified	_NLVAWIEEEQ_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.884033203125	3	410.871549	1229.59282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.557	1	15.447	14.947	15.947	-0.10981								0	0	0	0.37789	1	1065	1065		3.0723	1.1659	1		+		30706	17073	17817	17818	37781	37781					-0.012795144273695769
NLVCKLPRF	9	Unmodified	_NLVCKLPRF_					0	0	0		ENST00000530903.1_1_11:126073315-126075741:-|nuORF;nc|ENSG00000165526|Q96CM3-2|RPUSD4;ENSG00000165526|ENST00000298317|RPUSD4	ENST00000530903.1_1_11:126073315-126075741:-|nuORF	ENST00000530903.1_1_11:126073315-126075741:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.317138671875	2	545.315512	1088.61647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.89	1	119.87	119.37	120.37	-0.024361								0	0	0	0.26334	1	30937	30937		2.0598	0	1				30707	5973	17818	17819	37782	37782					0.07570672596102668
NLVDQAGREKI	11	Unmodified	_NLVDQAGREKI_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.8976745605469	3	414.89821	1241.6728	-0.14088	-5.8451E-05	-0.57122	-0.000237	-0.7121	-0.00029545	414.89813959581153	18.084	1.0187	18.084	17.771	18.79	0					107	34	5	0	0	0	0.4709	1	1920	1920		1.9275	0.33522	1	1083400			30708	8135	17819	17820	37783	37783					0.06162971966477926
NLVEKAQIA	9	Unmodified	_NLVEKAQIA_					0	0	0			REV__ENSG00000124788|ENST00000436367|ATXN1	REV__ENSG00000124788|ENST00000436367|ATXN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.6740417480469	2	493.287474	984.560395	0.088537	4.3674E-05	0.18246	9.0003E-05	0.27099	0.00013368	493.28752030568046	15.063	0.39381	15.063	14.925	15.319	0					23	13	2	0	0	0	0.24688	1	916	916		14.838	0.93222	1	278340	+		30709	15250	17820	17821	37784	37784					0.06749742960289495
NLVGREAAK	9	Unmodified	_NLVGREAAK_					0	0	0		PPP1R9A|p.K769Ifs*12|1|0.11|ENSG00000158528|chr7:95250230-95250231|-/T|frameshift_variant;nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;PPP1R9A|p.M1062Wfs*8|1|0.24|ENSG00000158528|chr7:95290187-95290187|A/-|frameshift_variant;ENSG00000158528|ENST00000433360|PPP1R9A	PPP1R9A|p.K769Ifs*12|1|0.11|ENSG00000158528|chr7:95250230-95250231|-/T|frameshift_variant	PPP1R9A|p.K769Ifs*12|1|0.11|ENSG00000158528|chr7:95250230-95250231|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.27752685546875	2	479.277441	956.540328	0.1868	8.9531E-05	0.095213	4.5634E-05	0.28202	0.00013516	479.27736151521805	74.127	3.7807	74.127	72.586	76.367	0					370	134	4	0	0	0	0.32371	2	19539	19539;19637		5.2969	0.066215	1	4891400			30710	5360	17821	17822	37785;37786	37785					0.06031992020314192
NLVKGPRSS	9	Unmodified	_NLVKGPRSS_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2774658203125	2	479.277441	956.540328	0.1868	8.9531E-05	0.095213	4.5634E-05	0.28202	0.00013516	479.27736151521805	74.127	3.7807	74.127	72.586	76.367	0					370	134	4	0	0	0	0.29176	8	18835	18835;18885;18931;18977;19122;19172;19213;19348		10.074	2.1638	1	4891400			30711	357	17822	17823	37787;37788;37789;37790;37791;37792;37793;37794	37787					0.06031992020336929
NLVKGPRSS	9	Unmodified	_NLVKGPRSS_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2773742675781	2	479.277441	956.540328	0.32241	0.00015452	-0.065257	-3.1276E-05	0.25715	0.00012325	479.2772482615654	71.811	1.9108	71.867	71.319	73.23	0.056572					209	69	4	0	0	0	0.31763	1	18455	18455		6.2058	6.2058	1	952830			30712	357	17822	17823	37795	37795					0.06031992020336929
NLVKGPRSS	9	Unmodified	_NLVKGPRSS_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2774963378906	2	479.277441	956.540328	0.20707	9.9242E-05	0.063652	3.0507E-05	0.27072	0.00012975	479.27735198558173	73.913	2.9622	73.965	73.226	76.188	0.052361					318	106	3	0	0	0	0.29176	7	18853	18853;19096;19145;19195;19296;19344;19444		10.074	3.8681	1	5051400			30713	357	17822	17823	37796;37797;37798;37799;37800;37801;37802	37796					0.06031992020336929
NLVKGPRSS	9	Unmodified	_NLVKGPRSS_					0	0	0		ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	ENSG00000006432|ENST00000554752|MAP3K9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.27752685546875	2	479.277441	956.540328	0.39285	0.00018828	-0.28276	-0.00013552	0.11009	5.2763E-05	479.2772159021679	75.409	1.3658	75.378	75.005	76.37	-0.031487					98	50	2	0	0	0	0.29176	1	19299	19299		10.074	2.7847	1	2627700			30714	357	17822	17823	37803	37803					0.06031992020336929
NLVKSSSKR	9	Unmodified	_NLVKSSSKR_					0	0	0		nc|ENSG00000126016|Q4VCS5-2|AMOT;ENSG00000126016|ENST00000371959|AMOT	nc|ENSG00000126016|Q4VCS5-2|AMOT	nc|ENSG00000126016|Q4VCS5-2|AMOT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8038024902344	2	509.803823	1017.59309	0.20921	0.00010665	0.10158	5.1787E-05	0.31079	0.00015844	509.8038063311014	76.124	0.86526	76.178	75.324	76.189	0.053413					61	31	2	0	0	0	0.31038	1	19410	19410		7.2892	7.2892	1	7245100			30715	3254	17823	17824	37804	37804					0.08499950083148633
NLVLAKNRRQ	10	Unmodified	_NLVLAKNRRQ_					0	0	0		nc|ENSG00000121236|Q9C030-3|TRIM6;TRIM6|p.G370Mfs*38|1|0.29|ENSG00000121236|chr11:5610982-5610986|GGGGG/-|frameshift_variant;nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6;ENST00000481603.1_1_11:5631742-5632569:+|nuORF	nc|ENSG00000121236|Q9C030-3|TRIM6	nc|ENSG00000121236|Q9C030-3|TRIM6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.370361328125	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.998	1	90.998	90.498	91.498	0								0	0	0	0.38198	1	24145	24145		1.4819	0	1				30716	2991	17824	17825	37805	37805					0.12890394539795125
NLVLAKNRRQ	10	Unmodified	_NLVLAKNRRQ_					0	0	0		nc|ENSG00000121236|Q9C030-3|TRIM6;TRIM6|p.G370Mfs*38|1|0.29|ENSG00000121236|chr11:5610982-5610986|GGGGG/-|frameshift_variant;nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6;ENST00000481603.1_1_11:5631742-5632569:+|nuORF	nc|ENSG00000121236|Q9C030-3|TRIM6	nc|ENSG00000121236|Q9C030-3|TRIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.370361328125	2	606.370195	1210.72584	0.54971	0.00033333	-0.35687	-0.00021639	0.19284	0.00011693	606.3698124394905	86.859	2.3907	86.946	86.728	89.119	0.08709					235	111	4	0	0	0	0.4155	2	23028	23028;23111		1.4819	1.4819	1	1359800			30717	2991	17824	17825	37806;37807	37806					0.12890394539795125
NLVLEKSSR	9	Unmodified	_NLVLEKSSR_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3036499023438	2	523.303655	1044.59276	0.40746	0.00021322	0.63294	0.00033122	1.0404	0.00054444	523.3035630147534	76.049	1.1371	76.102	75.052	76.189	0.053413					140	41	5	0	0	0	0.30064	2	19429	19429;19478		8.7454	1.1365	1	2005200			30718	5828	17825	17826	37808;37809	37808					0.07224530363305348
NLVLEKSSR	9	Unmodified	_NLVLEKSSR_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3035888671875	2	523.303655	1044.59276	0.61163	0.00032007	-0.42161	-0.00022063	0.19001	9.9435E-05	523.3032721893725	76.409	2.54	76.378	75.059	77.599	-0.031487					355	93	5	0	0	0	0.31763	3	19556	19556;19604;19702		6.2058	0.9089	1	3309700			30719	5828	17825	17826	37810;37811;37812	37810					0.07224530363305348
NLVLMKTFVI	10	Unmodified	_NLVLMKTFVI_					0	0	0		ENST00000283206.8_1_2:112821810-112824567:+|nuORF	ENST00000283206.8_1_2:112821810-112824567:+|nuORF	ENST00000283206.8_1_2:112821810-112824567:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3434448242188	2	589.354302	1176.69405	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.499	1	96.499	95.999	96.999	0								0	0	0	0.37355	1	25785	25785		4.897	1.6157	1				30720	9131	17826	17827	37813	37813					0.11277265741637166
NLVLNHQLVK	10	Unmodified	_NLVLNHQLVK_					0	0	0		NIPBL|p.E879Kfs*50|1|0.32|ENSG00000164190|chr5:36985813-36985813|G/-|frameshift_variant;ENST00000504430.5_1_5:36985950-36986067:+|nuORF	NIPBL|p.E879Kfs*50|1|0.32|ENSG00000164190|chr5:36985813-36985813|G/-|frameshift_variant	NIPBL|p.E879Kfs*50|1|0.32|ENSG00000164190|chr5:36985813-36985813|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3428344726562	2	589.356222	1176.69789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.339	1	96.339	95.839	96.839	0								0	0	0	0.37739	1	25737	25737		3.2813	0.54611	1				30721	13032	17827	17828	37814	37814					0.11661071559706215
NLVLNHQLVK	10	Unmodified	_NLVLNHQLVK_					0	0	0		NIPBL|p.E879Kfs*50|1|0.32|ENSG00000164190|chr5:36985813-36985813|G/-|frameshift_variant;ENST00000504430.5_1_5:36985950-36986067:+|nuORF	NIPBL|p.E879Kfs*50|1|0.32|ENSG00000164190|chr5:36985813-36985813|G/-|frameshift_variant	NIPBL|p.E879Kfs*50|1|0.32|ENSG00000164190|chr5:36985813-36985813|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.343505859375	2	589.356222	1176.69789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.42	1	105.42	104.92	105.92	0								0	0	0	0.37044	1	27921	27921		6.2058	2.6093	1				30722	13032	17827	17828	37815	37815					0.11661071559706215
NLVLNHQLVK	10	Unmodified	_NLVLNHQLVK_					0	0	0		NIPBL|p.E879Kfs*50|1|0.32|ENSG00000164190|chr5:36985813-36985813|G/-|frameshift_variant;ENST00000504430.5_1_5:36985950-36986067:+|nuORF	NIPBL|p.E879Kfs*50|1|0.32|ENSG00000164190|chr5:36985813-36985813|G/-|frameshift_variant	NIPBL|p.E879Kfs*50|1|0.32|ENSG00000164190|chr5:36985813-36985813|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3436279296875	2	589.356222	1176.69789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.337	1	98.398	97.898	98.898	0.061516								0	0	0	0.37739	1	26320	26320		3.2813	0.54611	1				30723	13032	17827	17828	37816	37816					0.11661071559706215
NLVLSYALCL	10	Unmodified	_NLVLSYALCL_					0	0	0			REV__ENST00000393485.5_1_7:115580607-115581081:-|nuORF	REV__ENST00000393485.5_1_7:115580607-115581081:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.8762817382812	2	554.807185	1107.59982	0.38008	0.00021087	-1.3538	-0.00075111	-0.97374	-0.00054024	554.8064040552066	47.299	0.66571	47.352	47.142	47.808	0.052574					44	24	2	0	0	0	0.29038	1	10778	10778		24.021	1.2843	1	518780	+		30724	20605	17828	17829	37817	37817					0.0503212691949102
NLVRYYEL	8	Unmodified	_NLVRYYEL_					0	0	0		nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.3056640625	2	535.287474	1068.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.241	1	60.23	59.73	60.73	-0.011486								0	0	0	0.34734	1	14713	14713		15.847	0	1				30725	2781	17829	17830	37818	37818					0.028857429602794582
NLVTLQKLPSL	11	Unmodified	_NLVTLQKLPSL_					0	0	0			REV__FBXL13|p.N528Tfs*8|1|0.22|ENSG00000161040|chr7:102877519-102877519|T/-|frameshift_variant	REV__FBXL13|p.N528Tfs*8|1|0.22|ENSG00000161040|chr7:102877519-102877519|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	613.3636474609375	2	613.379363	1224.74417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.461	1	89.46	88.96	89.96	-0.00080872								0	0	0	0.30959	1	23662	23662		17.113	0.96379	1		+		30726	16933	17830	17831	37819	37819					0.1407909167114667
NLVTVLEIV	9	Unmodified	_NLVTVLEIV_					0	0	0		nc|ENSG00000163803|Q6P1J6-4|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1;nc|ENSG00000163803|Q6P1J6-2|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.82574462890625	2	500.307875	998.601197	0.13875	6.9416E-05	-3.2022	-0.0016021	-3.0635	-0.0015327	500.8077103150072	99.663	0.052635	99.714	99.673	99.726	0.050896					8	6	2	0	0	0	0.25988	1	26648	26648		3.9444	0	1	21063			30727	5734	17831	17832	37820	37820					0.10184084279899253
NLWRLTHQ	8	Unmodified	_NLWRLTHQ_					0	0	0			REV__ENSG00000129566|ENST00000262715|TEP1	REV__ENSG00000129566|ENST00000262715|TEP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2828369140625	2	534.290882	1066.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.346	1	99.339	98.839	99.839	-0.006897								0	0	0	0.35466	1	26610	26610		12.532	1.7076	1		+		30728	15421	17832	17833	37821	37821					0.03659100631512047
NLYFYLLN	8	Unmodified	_NLYFYLLN_					0	0	0			REV__ENST00000509872.1_1_2:228512647-228513058:-|nuORF	REV__ENST00000509872.1_1_2:228512647-228513058:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2951049804688	2	530.279118	1058.54368	0.37937	0.00020117	0.13182	6.9901E-05	0.51119	0.00027107	530.278883338851	92.318	0.17263	92.407	92.335	92.508	0.089203					21	12	2	0	0	0	0.41758	1	24545	24545		16.942	3.0362	1	66100	+		30729	21794	17833	17834	37822	37822					0.01675242074338712
NLYFYLLN	8	Unmodified	_NLYFYLLN_					0	0	0			REV__ENST00000509872.1_1_2:228512647-228513058:-|nuORF	REV__ENST00000509872.1_1_2:228512647-228513058:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2945556640625	2	530.279118	1058.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.454	1	92.454	91.954	92.954	0.00046539								0	0	0	0.34492	1	24585	24585		16.942	3.0362	1		+		30730	21794	17833	17834	37823	37823					0.01675242074338712
NLYKKQDELLF	11	Unmodified	_NLYKKQDELLF_					0	0	0			REV__nc|ENSG00000139505|Q9Y217-2|MTMR6	REV__nc|ENSG00000139505|Q9Y217-2|MTMR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.8669128417969	3	470.925765	1409.75547	0.39816	0.00018751	-0.86281	-0.00040632	-0.46465	-0.00021882	470.92544741118394	47.053	0.86979	47.053	46.813	47.682	0					56	30	4	0	0	0	0.3322	1	10626	10626		4.7159	0.59929	1	976550	+		30731	15986	17834	17835	37824	37824					0.06697868974606536
NLYKQRDRSFF	11	Unmodified	_NLYKQRDRSFF_					0	0	0			REV__ENSG00000197748|ENST00000357060|CFAP43	REV__ENSG00000197748|ENST00000357060|CFAP43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2470397949219	3	491.924759	1472.75245	0.19905	9.7918E-05	-0.26154	-0.00012866	-0.062484	-3.0738E-05	491.9245975335692	24.449	0.6491	24.41	24.108	24.758	-0.038927					47	22	3	0	0	0	0.33303	1	3727	3727		2.4348	0.97967	1	182200	+		30732	18763	17835	17836	37825	37825					0.034980386404413366
NLYNKTKQF	9	Unmodified	_NLYNKTKQF_					0	0	0			REV__ENST00000476168.1_1_X:77112151-77150907:-|nuORF	REV__ENST00000476168.1_1_X:77112151-77150907:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3135375976562	2	578.31148	1154.60841	0.39131	0.0002263	2.8275	0.0016352	3.2188	0.0018615	578.3130689230561	71.885	0.43565	71.941	71.68	72.116	0.056572					26	15	3	0	0	0	0.18208	1	18285	18285		26.268	3.5319	1	99903	+		30733	21416	17836	17837	37826	37826					0.03728816880334307
NLYNKTKQF	9	Unmodified	_NLYNKTKQF_					0	0	0			REV__ENST00000476168.1_1_X:77112151-77150907:-|nuORF	REV__ENST00000476168.1_1_X:77112151-77150907:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	578.31148	1154.60841	0.39131	0.0002263	2.8275	0.0016352	3.2188	0.0018615	578.3130689230561	71.885	0.43565	71.941	71.68	72.116	0.056572	-0.0068882	0.00020738	NaN	26.268	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99903	+		30734	21416	17836	17837							0.03728816880334307
NLYNKTKQF	9	Unmodified	_NLYNKTKQF_					0	0	0			REV__ENST00000476168.1_1_X:77112151-77150907:-|nuORF	REV__ENST00000476168.1_1_X:77112151-77150907:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	578.31148	1154.60841	0.35657	0.00020621	2.5938	0.0015	2.9503	0.0017062	578.3129170226533	71.982	0.35115	71.955	71.765	72.117	-0.027275	0.0068882	-6.2969E-05	NaN	26.268	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164860	+		30735	21416	17836	17837							0.03728816880334307
NLYVQIHL	8	Unmodified	_NLYVQIHL_					0	0	0		nc|ENSG00000090487|Q9NZD8-2|SPG21;ENSG00000090487|ENST00000204566|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.313720703125	2	500.284734	998.554916	-0.080087	-4.0066E-05	-1.2015	-0.0006011	-1.2816	-0.00064117	500.2842397621991	25.119	0.31168	25.088	24.953	25.265	-0.031408					17	10	2	0	0	0	0.34046	1	3954	3954		14.582	0	1	78600			30736	1378	17837	17838	37827	37827					0.055580641684855436
NMAPRNKQ	8	Unmodified	_NMAPRNKQ_					0	0	0			REV__nc|ENSG00000006468|P50549-4|ETV1	REV__nc|ENSG00000006468|P50549-4|ETV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.74755859375	2	479.747993	957.481433	0.26837	0.00012875	-0.7609	-0.00036504	-0.49253	-0.00023629	479.74744067420863	91.043	0.84579	91.133	90.724	91.57	0.090668					160	64	3	0	0	0	0.45307	1	24198	24198		4.756	0.81161	1	6269100	+		30737	13361	17838	17839	37828	37828					0.000991924543427558
NMEIYAPIQ	9	Oxidation (M)	_NM(Oxidation (M))EIYAPIQ_		NM(1)EIYAPIQ		NM(42)EIYAPIQ	0	0	1			REV__ENSG00000173890|ENST00000355897|GPR160	REV__ENSG00000173890|ENST00000355897|GPR160	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7631225585938	2	547.762975	1093.5114	0.17828	9.7657E-05	-0.049894	-2.733E-05	0.12839	7.0327E-05	547.7631280145869	42.651	0.81514	42.651	42.193	43.008	0					83	29	4	0	0	0	0.079752	1	9355	9355		41.84	10.571	1	1364300	+		30738	17810	17839	17840	37829	37829		1003			-0.031619133909771335
NMKKCSIS	8	Unmodified	_NMKKCSIS_					0	0	0			REV__ENST00000329463.9_3_3:154032896-154032950:-|nuORF	REV__ENST00000329463.9_3_3:154032896-154032950:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2267761230469	2	455.72788	909.441208	0.10996	5.011E-05	-1.5722	-0.0007165	-1.4622	-0.00066639	455.726316047492	76.843	0.41414	76.897	76.619	77.033	0.053413					20	14	2	0	0	0	0.34247	1	19808	19808		8.5933	0	1	104630	+		30739	20030	17840	17841	37830	37830					-0.01713490260431172
NMKKCSIS	8	Unmodified	_NMKKCSIS_					0	0	0			REV__ENST00000329463.9_3_3:154032896-154032950:-|nuORF	REV__ENST00000329463.9_3_3:154032896-154032950:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	455.72788	909.441208	0.39452	0.00017979	-1.8741	-0.00085409	-1.4796	-0.0006743	455.7261655456806	76.924	0.53294	76.893	76.567	77.1	-0.031334	-0.0017821	-7.8069E-05	NaN	8.5933	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92798	+		30740	20030	17840	17841							-0.01713490260431172
NMKTTECSD	9	Unmodified	_NMKTTECSD_					0	0	0		ENST00000379752.5_1_1:157029186-157029948:-|nuORF	ENST00000379752.5_1_1:157029186-157029948:-|nuORF	ENST00000379752.5_1_1:157029186-157029948:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.28466796875	2	514.704799	1027.39505	0.20439	0.0001052	2.2058	0.0011353	2.4102	0.0012405	514.7057293491064	18.13	0.45946	18.13	17.96	18.419	0					23	15	2	0	0	0	0.25988	1	1880	1880		3.9444	1.6417	1	36395			30741	9976	17841	17842	37831	37831					-0.11755599953175988
NMLKEVQLM	9	Unmodified	_NMLKEVQLM_					0	0	0		ENST00000493974.1_1_1:45864648-45923292:-|nuORF;ENST00000486676.5_1_1:45821090-45923457:-|nuORF;nc|ENSG00000070759|Q96S53-3|TESK2;nc|ENSG00000070759|Q96S53-2|TESK2;ENSG00000070759|ENST00000372086|TESK2	ENST00000493974.1_1_1:45864648-45923292:-|nuORF	ENST00000493974.1_1_1:45864648-45923292:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7999267578125	2	553.290845	1104.56714	0.59997	0.00033196	1.3808	0.000764	1.9808	0.001096	553.2910082172519	54.229	0.21169	54.229	54.136	54.348	0					10	7	2	0	0	0	0.22596	1	12877	12877		21.747	13.153	1	175880			30742	939	17842	17843	37832	37832					0.019035965249713627
NMLRGEHH	8	Unmodified	_NMLRGEHH_					0	0	0		ENST00000550790.1_1_14:105858932-105859698:+|nuORF	ENST00000550790.1_1_14:105858932-105859698:+|nuORF	ENST00000550790.1_1_14:105858932-105859698:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.23748779296875	2	497.237793	992.461032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.455	1	90.546	90.046	91.046	0.090668								0	0	0	0.36961	1	23969	23969		5.7604	1.0044	1				30743	11798	17843	17844	37833	37833					-0.035499782054671414
NMNCQNRTF	9	Unmodified	_NMNCQNRTF_					0	0	0		ENST00000282382.8_2_5:114915695-114915866:-|nuORF	ENST00000282382.8_2_5:114915695-114915866:-|nuORF	ENST00000282382.8_2_5:114915695-114915866:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8222045898438	2	564.239675	1126.4648	0.24793	0.00013989	1.6308	0.00092015	1.8787	0.00106	564.2397118311367	80.827	0.26543	80.827	80.681	80.946	0					21	13	2	0	0	0	0.25323	1	21021	21021		6.2058	1.4498	1	112000			30744	9126	17844	17845	37834	37834					-0.09337676493919389
NNCFLYGVF	9	Unmodified	_NNCFLYGVF_					0	0	0		nc|ENSG00000100324|Q15750-2|TAB1;ENSG00000100324|ENST00000216160|TAB1	nc|ENSG00000100324|Q15750-2|TAB1	nc|ENSG00000100324|Q15750-2|TAB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2952880859375	2	538.747127	1075.4797	0.58639	0.00031592	-1.7189	-0.00092604	-1.1325	-0.00061012	539.247866717907	68.489	0.33667	68.469	68.315	68.652	-0.019157					18	11	2	0	0	0	0.24739	1	17235	17235		13.508	12.178	1	233280			30745	1569	17845	17846	37835	37835					-0.055018613542642925
NNCFLYGVF	9	Unmodified	_NNCFLYGVF_					0	0	0		nc|ENSG00000100324|Q15750-2|TAB1;ENSG00000100324|ENST00000216160|TAB1	nc|ENSG00000100324|Q15750-2|TAB1	nc|ENSG00000100324|Q15750-2|TAB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	538.747127	1075.4797	0.51236	0.00027603	-1.5929	-0.00085817	-1.0805	-0.00058214	538.7459170921497	68.437	0.44925	68.437	68.226	68.675	0	-0.027299	2.4259E-05	NaN	13.508	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241690			30746	1569	17845	17846							-0.055018613542642925
NNDSNYQLF	9	Unmodified	_NNDSNYQLF_					0	0	0			REV__nc|ENSG00000164520|Q8TD07-6|RAET1E	REV__nc|ENSG00000164520|Q8TD07-6|RAET1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7426147460938	2	557.743628	1113.4727	0.42517	0.00023713	-0.21214	-0.00011832	0.21302	0.00011881	557.7434910092451	79.471	0.59857	79.533	79.201	79.8	0.061417					34	25	2	0	0	0	0.25314	1	20580	20580		15.847	1.9411	1	217620	+		30747	23063	17846	17847	37836	37836					-0.07949502701148958
NNDSSTTIII	10	Unmodified	_NNDSSTTIII_					0	0	0		ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.81982421875	2	539.274761	1076.53497	0.38513	0.00020769	-0.91885	-0.00049551	-0.53372	-0.00028782	539.2739930614807	17.942	0.29134	17.942	17.835	18.127	0					11	9	2	0	0	0	0.32132	1	1801	1801		1.4819	0.28856	1	22514			30748	5931	17847	17848	37837	37837					-0.00023776352782078902
NNGLTEVL	8	Unmodified	_NNGLTEVL_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8874816894531	2	430.229625	858.444697	-0.24477	-0.00010531	0.0051651	2.2222E-06	-0.2396	-0.00010308	430.2294386108413	34.182	0.80562	34.249	33.939	34.744	0.066704					52	28	3	0	0	0	0.34218	1	6820	6820		9.3474	2.9933	1	453150			30749	6725	17848	17849	37838	37838					0.009812191094397349
NNHSFAKERK	10	Unmodified	_NNHSFAKERK_					0	0	0			REV__ZNF233|p.D432Sfs*2|1|0.06|ENSG00000159915|chr19:44273952-44273953|-/CTCA|frameshift_variant	REV__ZNF233|p.D432Sfs*2|1|0.06|ENSG00000159915|chr19:44273952-44273953|-/CTCA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.5329284667969	3	410.882782	1229.62652	-0.057746	-2.3727E-05	2.2168	0.00091085	2.1591	0.00088712	411.21765121530314	16.267	0.27024	16.153	15.921	16.191	-0.11434					9	8	2	0	0	0	0.3213	1	1222	1222		1.9064	0	1	17209	+		30750	16872	17849	17850	37839	37839					0.02088951855034793
NNIKEVLLF	9	Unmodified	_NNIKEVLLF_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3170166015625	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.26	1	113.24	112.74	113.74	-0.017303								0	0	0	0.24311	1	29444	29444		8.5933	0.68312	1				30751	814	17850	17851	37840	37840					0.08222889028479585
NNKECCFTF	9	Unmodified	_NNKECCFTF_					0	0	0		nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B	nc|ENSG00000189057|Q6SJ93-2|FAM111B	nc|ENSG00000189057|Q6SJ93-2|FAM111B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8300170898438	2	553.225702	1104.43685	0.41958	0.00023212	0.77064	0.00042634	1.1902	0.00065846	553.2262204189869	82.248	0.46454	82.248	82.024	82.489	0					35	16	3	0	0	0	0.25938	1	21434	21434		1.8442	1.4936	1	601850			30752	7798	17851	17852	37841	37841					-0.11118999474024349
NNKKQHPPLLF	11	Unmodified	_NNKKQHPPLLF_					0	0	0		ENST00000399916.5_1_1:25291100-25291430:-|nuORF	ENST00000399916.5_1_1:25291100-25291430:-|nuORF	ENST00000399916.5_1_1:25291100-25291430:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.63580322265625	3	445.922578	1334.7459	0.6505	0.00029007	0.0085202	3.7994E-06	0.65902	0.00029387	445.92243572415686	33.996	0.57876	33.996	33.728	34.306	0					43	20	4	0	0	0	0.33236	1	6671	6671		4.4062	1.9714	1	203940			30753	10182	17852	17853	37842	37842					0.09192145479732972
NNKKQHPPLLF	11	Unmodified	_NNKKQHPPLLF_					0	0	0		ENST00000399916.5_1_1:25291100-25291430:-|nuORF	ENST00000399916.5_1_1:25291100-25291430:-|nuORF	ENST00000399916.5_1_1:25291100-25291430:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.6358947753906	3	445.922578	1334.7459	0.74482	0.00033213	-0.51956	-0.00023168	0.22526	0.00010045	445.9221198113485	33.764	0.6667	33.831	33.65	34.317	0.06636					45	23	3	0	0	0	0.33122	1	6680	6680		4.4062	1.9714	1	180590			30754	10182	17852	17853	37843	37843					0.09192145479732972
NNLKFYGSI	9	Unmodified	_NNLKFYGSI_					0	0	0		ENST00000580156.1_1_17:29599642-29624196:-|nuORF	ENST00000580156.1_1_17:29599642-29624196:-|nuORF	ENST00000580156.1_1_17:29599642-29624196:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7554321289062	2	528.279649	1054.54475	0.93878	0.00049594	-0.71439	-0.0003774	0.22439	0.00011854	528.2792635133256	56.242	0.76585	56.321	56.117	56.883	0.078674					43	28	3	0	0	0	0.20651	1	13504	13504		14.838	0	1	854820			30755	12074	17853	17854	37844	37844					0.0196545644323578
NNNNQLMCQSV	11	Unmodified	_NNNNQLMCQSV_					0	0	0			REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.53497314453125	3	422.185145	1263.5336	-0.36185	-0.00015277	0.59442	0.00025095	0.23256	9.8185E-05	422.185363631592	28.044	0.39582	28.045	27.82	28.215	0.0004673					26	13	3	0	0	0	0.33255	1	4783	4783		1.2148	0	1	109410	+		30756	16791	17854	17855	37845	37845					-0.0876205698486956
NNNNQLMCQSV	11	Unmodified	_NNNNQLMCQSV_					0	0	0			REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	422.185145	1263.5336	-0.42423	-0.0001791	0.79574	0.00033595	0.37151	0.00015685	422.1853462689889	28.132	0.40777	28.132	27.87	28.277	0	0.020204	9.6084E-05	NaN	1.2148	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120290	+		30757	16791	17854	17855							-0.0876205698486956
NNNNQLMCQSV	11	Unmodified	_NNNNQLMCQSV_					0	0	0			REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	422.185145	1263.5336	-0.30783	-0.00012996	0.87181	0.00036807	0.56398	0.00023811	422.185361581431	28.162	0.50306	28.158	27.882	28.385	-0.0042572	0.046483	0.00019244	NaN	1.2148	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106940	+		30758	16791	17854	17855							-0.0876205698486956
NNRIWRNR	8	Unmodified	_NNRIWRNR_					0	0	0		nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;ENST00000478866.5_1_1:161180093-161180180:+|nuORF;ENST00000483804.5_1_1:161179060-161183980:+|nuORF	nc|ENSG00000158864|O75306-2|NDUFS2	nc|ENSG00000158864|O75306-2|NDUFS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3087768554688	2	564.810305	1127.60606	-0.077027	-4.3506E-05	3.673	0.0020746	3.596	0.0020311	565.3133237452906	12.917	0.33366	12.917	12.669	13.003	0					14	11	2	0	0	0	0.34408	1	226	226		2.3027	0.24298	1	54770			30759	5378	17855	17856	37846	37846					0.047358259858810925
NNRPAEGLLQ	10	Unmodified	_NNRPAEGLLQ_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.311279296875	2	556.296362	1110.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.436	1	63.436	62.936	63.936	0								0	0	0	0.35216	1	15711	15711		13.906	0.39817	1				30760	923	17856	17857	37847	37847					0.027304582151373324
NNRPLEAIMS	10	Unmodified	_NNRPLEAIMS_					0	0	0		ENSG00000143126|ENST00000271332|CELSR2	ENSG00000143126|ENST00000271332|CELSR2	ENSG00000143126|ENST00000271332|CELSR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.7921752929688	2	572.792598	1143.57064	0.14113	8.0836E-05	-0.41423	-0.00023727	-0.2731	-0.00015643	572.7922182121155	69.192	0.71773	69.192	68.9	69.618	0					60	25	3	0	0	0	0.36786	1	17515	17515		9.3831	1.2276	1	1383200			30761	4480	17857	17858	37848	37848					0.004599826232151827
NNSIRQLFL	9	Unmodified	_NNSIRQLFL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.789794921875	2	552.811648	1103.60874	0.40363	0.00022313	-0.84595	-0.00046765	-0.44233	-0.00024452	552.8109457274836	57.499	0.41599	57.585	57.372	57.788	0.085617					29	14	3	0	0	0	0.22143	1	13856	13856		24.991	3.454	1	447240			30762	4767	17858	17859	37849	37849					0.06108236600175587
NPAPRTIQI	9	Unmodified	_NPAPRTIQI_					0	0	0		ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2778015136719	2	505.293091	1008.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.135	1	51.135	50.635	51.635	0								0	0	0	0.21009	1	11910	11910		19.257	2.1704	1				30763	8353	17859	17860	37850	37850					0.06768565054437659
NPASFLTVLQR	11	Unmodified	_NPASFLTVLQR_					0	0	0			REV__ENST00000462832.5_1_2:29006774-29038903:+|nuORF	REV__ENST00000462832.5_1_2:29006774-29038903:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.9017333984375	3	415.903183	1244.68772	-0.072652	-3.0216E-05	-3.0245	-0.0012579	-3.0972	-0.0012881	415.9022692330503	28.801	0.55953	28.801	28.446	29.006	0					38	19	3	0	0	0	0.35732	1	5077	5077		16.838	1.3719	1	229900	+		30764	17720	17860	17861	37851	37851					0.07516463834440401
NPASFLTVLQR	11	Unmodified	_NPASFLTVLQR_					0	0	0			REV__ENST00000462832.5_1_2:29006774-29038903:+|nuORF	REV__ENST00000462832.5_1_2:29006774-29038903:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	415.903183	1244.68772	-0.072652	-3.0216E-05	-3.0245	-0.0012579	-3.0972	-0.0012881	415.9022692330503	28.801	0.55953	28.801	28.446	29.006	0	0.030255	-0.00020976	NaN	16.838	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229900	+		30765	17720	17860	17861							0.07516463834440401
NPASFLTVLQR	11	Unmodified	_NPASFLTVLQR_					0	0	0			REV__ENST00000462832.5_1_2:29006774-29038903:+|nuORF	REV__ENST00000462832.5_1_2:29006774-29038903:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	415.903183	1244.68772	0.15517	6.4535E-05	-3.2184	-0.0013386	-3.0633	-0.001274	415.902016039801	28.756	0.43125	28.752	28.467	28.898	-0.0042572	-0.018518	-0.00045168	NaN	16.838	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223190	+		30766	17720	17860	17861							0.07516463834440401
NPASFLTVLQR	11	Unmodified	_NPASFLTVLQR_					0	0	0			REV__ENST00000462832.5_1_2:29006774-29038903:+|nuORF	REV__ENST00000462832.5_1_2:29006774-29038903:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	415.903183	1244.68772	0.00071337	2.9669E-07	-2.4964	-0.0010383	-2.4957	-0.001038	415.90228542451274	28.758	0.47152	28.759	28.524	28.996	0.0004673	-0.011736	0.00044917	NaN	16.838	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253650	+		30767	17720	17860	17861							0.07516463834440401
NPASKVIAL	9	Unmodified	_NPASKVIAL_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTC|p.V305Cfs*6|1|0.38|ENSG00000141367|chr17:59655965-59655966|-/T|frameshift_variant;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7790222167969	2	456.779285	911.544017	0.077451	3.5378E-05	-0.075984	-3.4708E-05	0.0014672	6.7018E-07	456.77906130286084	41.714	0.75341	41.714	41.331	42.085	0					54	31	2	0	0	0	2.4752E-08	3	9012	8969;9012;9054		179.17	93.052	1	3410300			30768	4369;923	17861	17862	37852;37853;37854	37853					0.08470661794183343
NPASKVIAL	9	Unmodified	_NPASKVIAL_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTC|p.V305Cfs*6|1|0.38|ENSG00000141367|chr17:59655965-59655966|-/T|frameshift_variant;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7791748046875	2	456.779285	911.544017	0.1084	4.9513E-05	0.14861	6.7882E-05	0.25701	0.0001174	456.77916474768807	41.555	0.80258	41.646	41.324	42.126	0.090248					53	33	2	0	0	0	0.00010125	2	8958	8958;9002		140.63	66.237	1	4345400			30769	4369;923	17861	17862	37855;37856	37855					0.08470661794183343
NPASKVIAL	9	Unmodified	_NPASKVIAL_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;CLTC|p.V305Cfs*6|1|0.38|ENSG00000141367|chr17:59655965-59655966|-/T|frameshift_variant;nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant	ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7794494628906	2	456.779285	911.544017	0.39113	0.00017866	-0.24877	-0.00011364	0.14235	6.5024E-05	456.7789580589732	41.542	1.0016	41.639	41.233	42.235	0.096622					57	39	2	0	0	0	0.00051734	3	8938	8938;8980;9039		128.93	54.536	1	4184600			30770	4369;923	17861	17862	37857;37858;37859	37857					0.08470661794183343
NPASRLTAL	9	Unmodified	_NPASRLTAL_					0	0	0		ENSG00000107779|ENST00000372037|BMPR1A;ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000107779|ENST00000372037|BMPR1A	ENSG00000107779|ENST00000372037|BMPR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.282470703125	2	471.771991	941.529429	0.24348	0.00011487	-0.57534	-0.00027143	-0.33186	-0.00015656	471.77165718742157	39.359	0.52579	39.459	39.236	39.762	0.099407					32	18	2	0	0	0	0.15763	1	8248	8248		29.841	0.759	1	222900			30771	2146	17862	17863	37860	37860					0.056325896460293734
NPASRLTAL	9	Unmodified	_NPASRLTAL_					0	0	0		ENSG00000107779|ENST00000372037|BMPR1A;ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000107779|ENST00000372037|BMPR1A	ENSG00000107779|ENST00000372037|BMPR1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	471.771991	941.529429	-0.24756	-0.00011679	0.24778	0.0001169	0.00022479	1.0605E-07	471.7720365826555	39.564	0.62021	39.564	39.294	39.914	0	0.04055	0.00033805	NaN	29.841	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172720			30772	2146	17862	17863							0.056325896460293734
NPAVTAALLQ	10	Unmodified	_NPAVTAALLQ_					0	0	0		nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENST00000584336.1_1_17:37686825-37687566:+|nuORF	nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2751159667969	2	499.287474	996.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.362	1	51.362	50.862	51.862	0								0	0	0	0.34376	1	11980	11980		17.443	0.32975	1				30773	6163	17863	17864	37861	37861					0.06197742960296182
NPCEFFVDI	9	Unmodified	_NPCEFFVDI_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.295654296875	2	542.244418	1082.47428	0.14015	7.5998E-05	-2.0811	-0.0011285	-1.9409	-0.0010525	542.2432926005457	13.411	0.28186	13.411	13.227	13.509	0					15	9	2	0	0	0	0.25938	1	440	440		4.3292	1.7518	1	63485			30774	2124	17864	17865	37862	37862					-0.06365584936747837
NPCEFFVDI	9	Unmodified	_NPCEFFVDI_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	542.244418	1082.47428	0.17152	9.3008E-05	-2.0065	-0.001088	-1.8349	-0.00099499	542.2431852220398	13.467	0.25178	13.368	13.189	13.441	-0.099291	-0.021604	3.8684E-05	NaN	4.3292	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75045			30775	2124	17864	17865							-0.06365584936747837
NPDHARNSL	9	Unmodified	_NPDHARNSL_					0	0	0		nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2518920898438	2	512.251954	1022.48936	0.0094801	4.8562E-06	-1.6439	-0.0008421	-1.6344	-0.00083724	512.2505740970892	14.374	0.82841	14.374	13.847	14.676	0					49	28	3	0	0	0	0.26807	1	703	703		13.615	3.5409	1	100070			30776	2496	17865	17866	37863	37863					-0.02098957024520587
NPDHARNSL	9	Unmodified	_NPDHARNSL_					0	0	0		nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2517700195312	2	512.251954	1022.48936	-0.037512	-1.9215E-05	-1.0172	-0.00052104	-1.0547	-0.00054026	512.2510187041181	14.514	0.63247	14.409	14.079	14.711	-0.10466					37	21	3	0	0	0	0.2869	1	754	754		10.8	3.5103	1	89616			30777	2496	17865	17866	37864	37864					-0.02098957024520587
NPDHARNSL	9	Unmodified	_NPDHARNSL_					0	0	0		nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.250732421875	2	512.251954	1022.48936	-0.099011	-5.0719E-05	-0.87115	-0.00044625	-0.97016	-0.00049697	512.2510017167515	14.532	0.71857	14.466	14.07	14.788	-0.066068					40	25	3	0	0	0	0.31164	1	742	742		7.1017	2.7725	1	74686			30778	2496	17865	17866	37865	37865					-0.02098957024520587
NPDIGAKQMEF	11	Unmodified	_NPDIGAKQMEF_					0	0	0			REV__DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	REV__DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.1889343261719	3	417.200901	1248.58087	0.053561	2.2346E-05	-0.032469	-1.3546E-05	0.021093	8.7998E-06	417.20026514786844	42.481	0.42719	42.566	42.407	42.834	0.085197					43	15	4	0	0	0	0.39698	1	9245	9245		11.631	0.13666	1	401780	+		30779	13293	17866	17867	37866	37866					-0.03347454442223352
NPDKIWPAAR	10	Unmodified	_NPDKIWPAAR_					0	0	0			REV__ENSG00000106479|ENST00000223210|ZNF862	REV__ENSG00000106479|ENST00000223210|ZNF862	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.337646484375	2	584.317097	1166.61964	0.39083	0.00022837	0.0026991	1.5771E-06	0.39353	0.00022995	584.3170005492342	44.3	0.78888	44.375	44.094	44.883	0.075047					86	28	4	0	0	0	0.31867	1	9894	9894		18.146	5.1039	1	4138800	+		30780	14524	17867	17868	37867	37867					0.04299638974453046
NPEKRYNVL	9	Unmodified	_NPEKRYNVL_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2;HNRNPUL2|p.L598Afs*2|1|0.43|ENSG00000214753|chr11:62717177-62717178|AA/-|frameshift_variant;HNRNPUL2|p.C602Mfs*6|1|0.16|ENSG00000214753|chr11:62717166-62717167|-/T|frameshift_variant;HNRNPUL2|p.A486D|1|0.29|ENSG00000214753|chr11:62721845-62721845|G/T|missense_variant	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.80908203125	2	566.809105	1131.60366	0.18062	0.00010237	0.15264	8.6519E-05	0.33326	0.00018889	566.809122668708	26.785	0.7079	26.785	26.499	27.207	0					78	24	4	0	0	0	0.00078391	2	4423	4423;4471		125.53	71.696	1	1163000			30781	8390	17868	17869	37868;37869	37868					0.04311932737573443
NPEKRYNVL	9	Unmodified	_NPEKRYNVL_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2;HNRNPUL2|p.L598Afs*2|1|0.43|ENSG00000214753|chr11:62717177-62717178|AA/-|frameshift_variant;HNRNPUL2|p.C602Mfs*6|1|0.16|ENSG00000214753|chr11:62717166-62717167|-/T|frameshift_variant;HNRNPUL2|p.A486D|1|0.29|ENSG00000214753|chr11:62721845-62721845|G/T|missense_variant	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.8092041015625	2	566.809105	1131.60366	0.32968	0.00018686	0.00099147	5.6198E-07	0.33067	0.00018743	566.8090246260205	26.78	0.65163	26.758	26.478	27.13	-0.02141					67	22	4	0	0	0	0.0037772	2	4474	4427;4474		96.111	54.271	1	1261400			30782	8390	17868	17869	37870;37871	37871					0.04311932737573443
NPEKRYNVL	9	Unmodified	_NPEKRYNVL_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2;HNRNPUL2|p.L598Afs*2|1|0.43|ENSG00000214753|chr11:62717177-62717178|AA/-|frameshift_variant;HNRNPUL2|p.C602Mfs*6|1|0.16|ENSG00000214753|chr11:62717166-62717167|-/T|frameshift_variant;HNRNPUL2|p.A486D|1|0.29|ENSG00000214753|chr11:62721845-62721845|G/T|missense_variant	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.8092651367188	2	566.809105	1131.60366	0.37713	0.00021376	-0.080124	-4.5415E-05	0.29701	0.00016835	566.8090082340397	26.853	0.67229	26.842	26.541	27.213	-0.01156					68	23	4	0	0	0	0.0037772	1	4485	4485		96.111	42.278	1	1131700			30783	8390	17868	17869	37872	37872					0.04311932737573443
NPEVKKTSW	9	Unmodified	_NPEVKKTSW_					0	0	0		MYB|p.R153Tfs*73|1|0.05|ENSG00000118513|chr6:135190277-135190278|-/CAAAAATAACCTAT|frameshift_variant;nc|ENSG00000118513|P10242-12|MYB;nc|ENSG00000118513|P10242-3|MYB;nc|ENSG00000118513|P10242-5|MYB;nc|ENSG00000118513|P10242-11|MYB;MYB|p.T443Lfs*18|1|0.16|ENSG00000118513|chr6:135199028-135199028|A/-|frameshift_variant;nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242-9|MYB;nc|ENSG00000118513|P10242-2|MYB;nc|ENSG00000118513|P10242|MYB;nc|ENSG00000118513|P10242-6|MYB;nc|ENSG00000118513|P10242-8|MYB;nc|ENSG00000118513|P10242-7|MYB;ENSG00000118513|ENST00000341911|MYB	MYB|p.R153Tfs*73|1|0.05|ENSG00000118513|chr6:135190277-135190278|-/CAAAAATAACCTAT|frameshift_variant	MYB|p.R153Tfs*73|1|0.05|ENSG00000118513|chr6:135190277-135190278|-/CAAAAATAACCTAT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.79296875	2	544.790381	1087.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.36	1	112.35	111.85	112.85	-0.015625								0	0	0	0.26513	1	29228	29228		1.4819	0.28856	1				30784	2831	17869	17870	37873	37873					0.025928414719373905
NPFLFSTI	8	Unmodified	_NPFLFSTI_					0	0	0		nc|ENSG00000177683|Q7Z6K1-2|THAP5;ENSG00000177683|ENST00000415914|THAP5	nc|ENSG00000177683|Q7Z6K1-2|THAP5	nc|ENSG00000177683|Q7Z6K1-2|THAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7528076171875	2	469.752736	937.490919	0.048399	2.2736E-05	0.37469	0.00017601	0.42309	0.00019875	469.75279768789215	81.822	0.71931	81.822	81.478	82.197	0					56	27	3	0	0	0	0.39068	1	21297	21297		20.454	5.8719	1	631200			30785	7010	17870	17871	37874	37874					0.019672840115276813
NPFLFSTI	8	Unmodified	_NPFLFSTI_					0	0	0		nc|ENSG00000177683|Q7Z6K1-2|THAP5;ENSG00000177683|ENST00000415914|THAP5	nc|ENSG00000177683|Q7Z6K1-2|THAP5	nc|ENSG00000177683|Q7Z6K1-2|THAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7528381347656	2	469.752736	937.490919	-0.10092	-4.7409E-05	0.657	0.00030863	0.55608	0.00026122	469.7528693615251	81.691	0.64713	81.76	81.507	82.154	0.068993					57	28	3	0	0	0	0.3474	3	21258	21249;21258;21293		25.399	12.868	1	593420			30786	7010	17870	17871	37875;37876;37877	37876					0.019672840115276813
NPFLFSTI	8	Unmodified	_NPFLFSTI_					0	0	0		nc|ENSG00000177683|Q7Z6K1-2|THAP5;ENSG00000177683|ENST00000415914|THAP5	nc|ENSG00000177683|Q7Z6K1-2|THAP5	nc|ENSG00000177683|Q7Z6K1-2|THAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7529296875	2	469.752736	937.490919	0.24374	0.0001145	0.28231	0.00013261	0.52605	0.00024711	469.75274785336904	81.789	0.69564	81.765	81.497	82.193	-0.024048					59	28	3	0	0	0	0.28696	2	21323	21280;21323		32.305	14.171	1	672290			30787	7010	17870	17871	37878;37879	37879					0.019672840115276813
NPFPPQLY	8	Unmodified	_NPFPPQLY_					0	0	0			REV__ENST00000590815.5_1_18:44662751-44663638:-|nuORF	REV__ENST00000590815.5_1_18:44662751-44663638:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7716064453125	2	488.25036	974.486168	0.19773	9.6544E-05	-0.19612	-9.5754E-05	0.0016163	7.8914E-07	488.2504771192928	19.361	0.37214	19.245	19.116	19.488	-0.11592					20	12	2	0	0	0	0.34408	1	2190	2190		2.3027	0	1	29608	+		30788	22557	17871	17872	37880	37880					-0.0020960013125659316
NPFPTNENPR	10	Unmodified	_NPFPTNENPR_					0	0	0		ENSG00000187944|ENST00000342506|C2orf66;nc|nan|Q6UXQ4|C2orf66	ENSG00000187944|ENST00000342506|C2orf66	ENSG00000187944|ENST00000342506|C2orf66	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.8012084960938	2	593.285994	1184.55744	0.5811	0.00034476	2.0331	0.0012062	2.6142	0.001551	593.2873464134767	44.786	0.40311	44.861	44.669	45.072	0.075047					25	14	2	0	0	0	0.31691	1	9945	9945		5.7319	5.7319	1	257640			30789	7720	17872	17873	37881	37881					-0.027461321645205317
NPHCKLEQK	9	Unmodified	_NPHCKLEQK_					0	0	0		ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7823486328125	2	548.782033	1095.54951	0.20946	0.00011495	0.93435	0.00051276	1.1438	0.0006277	548.7827168293231	12.521	0.25658	12.424	12.324	12.58	-0.096607					14	8	2	0	0	0	0.33508	1	168	168		3.5965	1.5367	1	36871			30790	3476	17873	17874	37882	37882					0.005560173143521752
NPHCKLEQK	9	Unmodified	_NPHCKLEQK_					0	0	0		ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	548.782033	1095.54951	0.031124	1.7081E-05	0.34277	0.00018811	0.37389	0.00020519	548.7824051424773	12.545	0.20277	12.477	12.377	12.579	-0.06806	0.0063569	-0.00033812	NaN	3.5965	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43500			30791	3476	17873	17874							0.005560173143521752
NPHDVLVL	8	Unmodified	_NPHDVLVL_					0	0	0			REV__nc|ENSG00000185189|Q9NSY0-5|NRBP2	REV__nc|ENSG00000185189|Q9NSY0-5|NRBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7376708984375	2	453.75581	905.497067	0.29283	0.00013287	0.18726	8.497E-05	0.48009	0.00021784	453.7556366932484	44.941	0.91688	45.01	44.711	45.628	0.068569					69	32	3	0	0	0	0.32435	1	10169	10169		16.942	0	1	641050	+		30792	18362	17874	17875	37883	37883					0.04053802243049631
NPHLRMLTRK	10	Unmodified	_NPHLRMLTRK_					0	0	0			REV__nc|ENSG00000075651|Q13393-3|PLD1	REV__nc|ENSG00000075651|Q13393-3|PLD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.368896484375	2	633.366598	1264.71864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.055	1	11.987	11.487	12.487	-0.06806								0	0	0	0.38202	1	12	12		0.40072	0	1		+		30793	13817	17875	17876	37884	37884					0.096873386677089
NPINSATSI	9	Unmodified	_NPINSATSI_					0	0	0		ENSG00000182552|ENST00000326397|RWDD4;nc|ENSG00000182552|Q6NW29-2|RWDD4;ENST00000426392.1_1_7:39894095-39894470:-|nuORF	ENSG00000182552|ENST00000326397|RWDD4	ENSG00000182552|ENST00000326397|RWDD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7677001953125	2	458.740357	915.46616	0.33651	0.00015437	-0.37988	-0.00017427	-0.043369	-1.9895E-05	458.73999783000676	44.796	0.35765	44.796	44.633	44.991	0					20	12	2	0	0	0	0.20881	1	9944	9944		16.149	3.1066	1	179710			30794	7300	17876	17877	37885	37885					0.005046041381433497
NPISRLAQI	9	Unmodified	_NPISRLAQI_					0	0	0		nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;nc|ENSG00000040341|Q9NUL3-7|STAU2;nc|ENSG00000040341|Q9NUL3-4|STAU2;nc|ENSG00000040341|Q9NUL3-6|STAU2;ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	nc|ENSG00000040341|Q9NUL3-8|STAU2;ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.26666259765625	2	506.300916	1010.58728	0.67346	0.00034097	-0.62871	-0.00031832	0.044753	2.2658E-05	506.300354269279	51.007	0.87221	51.007	50.326	51.198	0					50	31	2	0	0	0	0.0076724	1	11854	11854		78.06	34.288	1	306960			30795	3143;601	17877	17878	37886	37886					0.08240851571463281
NPISRLAQI	9	Unmodified	_NPISRLAQI_					0	0	0		nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;nc|ENSG00000040341|Q9NUL3-7|STAU2;nc|ENSG00000040341|Q9NUL3-4|STAU2;nc|ENSG00000040341|Q9NUL3-6|STAU2;ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	nc|ENSG00000040341|Q9NUL3-8|STAU2;ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2668151855469	2	506.300916	1010.58728	0.53025	0.00026847	-0.84969	-0.0004302	-0.31944	-0.00016173	506.30038060999476	50.957	0.56509	51.003	50.656	51.221	0.046574					44	20	3	0	0	0	0.097101	1	11798	11798		49.527	24.536	1	444670			30796	3143;601	17877	17878	37887	37887					0.08240851571463281
NPISRLAQI	9	Unmodified	_NPISRLAQI_					0	0	0		nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;nc|ENSG00000040341|Q9NUL3-7|STAU2;nc|ENSG00000040341|Q9NUL3-4|STAU2;nc|ENSG00000040341|Q9NUL3-6|STAU2;ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	nc|ENSG00000040341|Q9NUL3-8|STAU2;ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2669677734375	2	506.300916	1010.58728	0.58688	0.00029714	-0.95723	-0.00048465	-0.37035	-0.00018751	506.3002935787533	50.975	0.67398	50.984	50.647	51.321	0.0095634					47	25	3	0	0	0	0.097101	1	11831	11831		42.312	12.472	1	376940			30797	3143;601	17877	17878	37888	37888					0.08240851571463281
NPKAFFSVL	9	Unmodified	_NPKAFFSVL_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2806396484375	2	511.78711	1021.55967	0.40861	0.00020912	-0.41127	-0.00021048	-0.0026585	-1.3606E-06	511.78678463436427	63.624	1.5385	63.615	63.297	64.836	-0.0085526					84	55	3	0	0	0	0.026579	2	15779	15779;15851		61.602	29.485	1	2181200			30798	3551	17878	17879	37889;37890	37889					0.0497494831122367
NPKESSSSL	9	Unmodified	_NPKESSSSL_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.Q1078Afs*25|1|0.3|ENSG00000077235|chr16:27489664-27489665|-/T|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7352600097656	2	474.735271	947.45599	-0.090365	-4.29E-05	0.21691	0.00010298	0.12655	6.0076E-05	474.7353369029675	15.658	0.80235	15.658	15.382	16.184	0					49	27	2	0	0	0	0.0028032	1	1082	1082		103.82	14.423	1	517940			30799	1082	17879	17880	37891	37891					-0.019840035870743122
NPKESSSSL	9	Unmodified	_NPKESSSSL_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.Q1078Afs*25|1|0.3|ENSG00000077235|chr16:27489664-27489665|-/T|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.73529052734375	2	474.735271	947.45599	0.03672	1.7432E-05	0.14644	6.9522E-05	0.18316	8.6954E-05	474.7353041585672	15.796	0.7877	15.686	15.436	16.224	-0.10981					49	26	2	0	0	0	0.003673	1	1111	1111		96.936	17.339	1	577250			30800	1082	17879	17880	37892	37892					-0.019840035870743122
NPKESSSSL	9	Unmodified	_NPKESSSSL_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.Q1078Afs*25|1|0.3|ENSG00000077235|chr16:27489664-27489665|-/T|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.7353210449219	2	474.735271	947.45599	0.030249	1.436E-05	0.19233	9.1307E-05	0.22258	0.00010567	474.735299870043	15.716	0.77609	15.651	15.457	16.233	-0.064413					47	26	2	0	0	0	0.0028032	2	1092	1092;1138		103.82	24.227	1	661890			30801	1082	17879	17880	37893;37894	37893					-0.019840035870743122
NPKGRRGRAA	10	Unmodified	_NPKGRRGRAA_					0	0	0		ENST00000393279.2_1_2:96192658-96192829:+|nuORF	ENST00000393279.2_1_2:96192658-96192829:+|nuORF	ENST00000393279.2_1_2:96192658-96192829:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.345947265625	2	541.81813	1081.62171	0.63802	0.00034569	-0.72382	-0.00039218	-0.0858	-4.6488E-05	541.8176197812534	41.961	0.90653	42.051	41.829	42.736	0.090248					64	32	3	0	0	0	0.31629	1	9195	9195		6.2058	6.2058	1	1793800			30802	10042	17880	17881	37895	37895					0.08416112502936812
NPKGRRGRAA	10	Unmodified	_NPKGRRGRAA_					0	0	0		ENST00000393279.2_1_2:96192658-96192829:+|nuORF	ENST00000393279.2_1_2:96192658-96192829:+|nuORF	ENST00000393279.2_1_2:96192658-96192829:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.81813	1081.62171	0.26088	0.00014135	-0.38448	-0.00020832	-0.1236	-6.697E-05	541.817821160446	42.193	0.80566	42.193	41.9	42.706	0	0.13137	0.00036343	NaN	6.2058	69	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2035300			30803	10042	17880	17881							0.08416112502936812
NPKGRRGRAA	10	Unmodified	_NPKGRRGRAA_					0	0	0		ENST00000393279.2_1_2:96192658-96192829:+|nuORF	ENST00000393279.2_1_2:96192658-96192829:+|nuORF	ENST00000393279.2_1_2:96192658-96192829:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.81813	1081.62171	0.77965	0.00042243	-0.85859	-0.0004652	-0.07894	-4.2771E-05	541.8176412201519	41.844	0.73432	41.94	41.77	42.505	0.096626	-0.12114	-0.00015033	NaN	6.2058	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1952000			30804	10042	17880	17881							0.08416112502936812
NPKKPGRVT	9	Unmodified	_NPKKPGRVT_					0	0	0		nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2	nc|ENSG00000204256|P25440-3|BRD2	nc|ENSG00000204256|P25440-3|BRD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.8009948730469	2	498.801083	995.587613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.307	1	12.307	11.807	12.807	0								0	0	0	0.26044	1	87	87		2.9952	0.41776	1				30805	8208	17881	17882	37896	37896					0.0896427129133599
NPKKVSLIA	9	Unmodified	_NPKKVSLIA_					0	0	0		nc|ENSG00000111837|P20794-3|MAK;nc|ENSG00000111837|P20794|MAK;ENSG00000111837|ENST00000354489|MAK	nc|ENSG00000111837|P20794-3|MAK	nc|ENSG00000111837|P20794-3|MAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.3080139160156	2	485.30821	968.601866	-0.12115	-5.8795E-05	-0.2436	-0.00011822	-0.36475	-0.00017702	485.3084148049104	12.159	0.62228	12.159	12.018	12.641	0					55	23	3	0	0	0	0.34681	1	83	83		1.8442	0	1	2968000			30806	2393	17882	17883	37897	37897					0.11630923719610564
NPKRQTLVF	9	Unmodified	_NPKRQTLVF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8221435546875	2	551.822015	1101.62948	0.20732	0.00011441	0.22784	0.00012573	0.43516	0.00024013	551.8221217461765	31.166	0.69081	31.166	30.862	31.553	0					64	24	4	0	0	0	0.020233	2	5771	5771;5823		63.961	38.561	1	470530			30807	1364	17883	17884	37898;37899	37898					0.08272826979850834
NPKRQTLVF	9	Unmodified	_NPKRQTLVF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8221435546875	2	551.822015	1101.62948	0.15375	8.4842E-05	0.23794	0.0001313	0.39169	0.00021614	551.8220866909631	31.166	0.60576	31.209	30.968	31.574	0.042366					54	21	3	0	0	0	0.21538	1	5770	5770		26.268	13.226	1	513700			30808	1364	17883	17884	37900	37900					0.08272826979850834
NPKRQTLVF	9	Unmodified	_NPKRQTLVF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8221435546875	2	551.822015	1101.62948	0.29391	0.00016219	0.18456	0.00010185	0.47848	0.00026404	551.8220797420921	31.103	0.60008	31.144	30.907	31.507	0.040989					48	21	3	0	0	0	0.04299	2	5757	5757;5811		55.503	23.464	1	572460			30809	1364	17883	17884	37901;37902	37901					0.08272826979850834
NPLKKLLMW	9	Unmodified	_NPLKKLLMW_					0	0	0		ENST00000546604.5_1_12:56189840-56194394:-|nuORF	ENST00000546604.5_1_12:56189840-56194394:-|nuORF	ENST00000546604.5_1_12:56189840-56194394:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.3139038085938	2	571.841362	1141.66817	0.21198	0.00012122	-0.01506	-8.6119E-06	0.19692	0.00011261	571.8414770759716	17.052	0.26577	17.052	16.952	17.217	0					13	8	2	0	0	0	0.26257	1	1526	1526		0.52476	0.52476	1	35719			30810	11763	17884	17885	37903	37903					0.10300416290010617
NPLLQHLQK	9	Unmodified	_NPLLQHLQK_					0	0	0			REV__ENSG00000090060|ENST00000216277|PAPOLA	REV__ENSG00000090060|ENST00000216277|PAPOLA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2938232421875	2	545.822015	1089.62948	0.41742	0.00022784	-0.024756	-1.3512E-05	0.39267	0.00021433	545.8221011316671	27.247	0.30584	27.225	27.015	27.321	-0.021412					17	10	2	0	0	0	0.25323	1	4583	4583		10.074	2.1638	1	113530	+		30811	14037	17885	17886	37904	37904					0.0882482697982141
NPLLQHLQK	9	Unmodified	_NPLLQHLQK_					0	0	0			REV__ENSG00000090060|ENST00000216277|PAPOLA	REV__ENSG00000090060|ENST00000216277|PAPOLA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2933959960938	2	545.822015	1089.62948	0.45652	0.00024918	-0.63925	-0.00034892	-0.18273	-9.974E-05	545.8213390066693	27.256	0.48505	27.244	27.07	27.555	-0.011562					25	16	2	0	0	0	0.25706	1	4582	4582		6.7232	0.51738	1	121380	+		30812	14037	17885	17886	37905	37905					0.0882482697982141
NPLLQHLQK	9	Unmodified	_NPLLQHLQK_					0	0	0			REV__ENSG00000090060|ENST00000216277|PAPOLA	REV__ENSG00000090060|ENST00000216277|PAPOLA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	545.822015	1089.62948	0.33225	0.00018135	0.032494	1.7736E-05	0.36475	0.00019909	545.8218054791525	27.281	0.37746	27.281	27.063	27.441	0	0.030901	0.00022716	NaN	10.074	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104590	+		30813	14037	17885	17886							0.0882482697982141
NPLMAHLLS	9	Unmodified	_NPLMAHLLS_					0	0	0		nc|ENSG00000126217|O15068-4|MCF2L;nc|ENSG00000126217|O15068-3|MCF2L;nc|ENSG00000126217|O15068-2|MCF2L;nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L;nc|ENSG00000126217|O15068-5|MCF2L	nc|ENSG00000126217|O15068-4|MCF2L	nc|ENSG00000126217|O15068-4|MCF2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.316162109375	2	498.27077	994.526987	0.43994	0.00021921	-1.5241	-0.0007594	-1.0841	-0.00054019	498.2701450831846	37.415	0.57127	37.502	37.169	37.741	0.087406					22	20	2	0	0	0	0.24311	1	7746	7746		16.942	5.302	1	155460			30814	3261	17886	17887	37906	37906					0.029504179167361144
NPLPSKETI	9	Unmodified	_NPLPSKETI_					0	0	0		ENST00000402089.4_1_4:91760056-91760137:-|nuORF;ENSG00000205542|ENST00000451311|TMSB4X;ENST00000323496.5_1_9:131104444-131104642:+|nuORF	ENST00000402089.4_1_4:91760056-91760137:-|nuORF	ENST00000402089.4_1_4:91760056-91760137:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7789001464844	2	499.779482	997.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.045	1	35.045	34.545	35.545	0								0	0	0	0.0040423	1	6976	6976		89.401	24.166	1				30815	8294	17887	17888	37907	37907					0.04554036723379795
NPLPSKETI	9	Unmodified	_NPLPSKETI_					0	0	0		ENST00000402089.4_1_4:91760056-91760137:-|nuORF;ENSG00000205542|ENST00000451311|TMSB4X;ENST00000323496.5_1_9:131104444-131104642:+|nuORF	ENST00000402089.4_1_4:91760056-91760137:-|nuORF	ENST00000402089.4_1_4:91760056-91760137:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.77923583984375	2	499.779482	997.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.195	1	35.195	34.695	35.695	0								0	0	0	0.010523	1	7022	7022		79.596	20.917	1				30816	8294	17887	17888	37908	37908					0.04554036723379795
NPLPSKETI	9	Unmodified	_NPLPSKETI_					0	0	0		ENST00000402089.4_1_4:91760056-91760137:-|nuORF;ENSG00000205542|ENST00000451311|TMSB4X;ENST00000323496.5_1_9:131104444-131104642:+|nuORF	ENST00000402089.4_1_4:91760056-91760137:-|nuORF	ENST00000402089.4_1_4:91760056-91760137:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.77923583984375	2	499.779482	997.544411	-0.65451	-0.00032711	0.28401	0.00014194	-0.3705	-0.00018517	499.7794650659408	35.038	0.57924	35.113	34.874	35.454	0.075306					53	20	3	0	0	0	0.0046246	1	7003	7003		89.401	31.929	1	1094900			30817	8294	17887	17888	37909	37909					0.04554036723379795
NPLPSKETI	9	Unmodified	_NPLPSKETI_					0	0	0		ENST00000402089.4_1_4:91760056-91760137:-|nuORF;ENSG00000205542|ENST00000451311|TMSB4X;ENST00000323496.5_1_9:131104444-131104642:+|nuORF	ENST00000402089.4_1_4:91760056-91760137:-|nuORF	ENST00000402089.4_1_4:91760056-91760137:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.779296875	2	499.779482	997.544411	-0.67205	-0.00033588	0.44516	0.00022248	-0.22689	-0.0001134	499.7795451598958	35.026	0.61014	35.103	34.807	35.418	0.077377					55	21	3	0	0	0	0.0046246	1	6973	6973		89.401	30.722	1	1315500			30818	8294	17887	17888	37910	37910					0.04554036723379795
NPLRRSAR	8	Unmodified	_NPLRRSAR_					0	0	0		ENST00000553343.5_1_14:24910101-24911445:-|nuORF;ENST00000554698.5_1_14:24911313-24911620:-|nuORF;ENST00000556548.5_1_14:24911313-24911538:-|nuORF;ENST00000556523.1_1_14:24910114-24911620:-|nuORF	ENST00000553343.5_1_14:24910101-24911445:-|nuORF	ENST00000553343.5_1_14:24910101-24911445:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.8034973144531	2	485.288674	968.562795	-0.12281	-5.9597E-05	1.4829	0.00071962	1.3601	0.00066002	485.2892205131914	27.804	0.20291	27.782	27.72	27.923	-0.021412					9	6	2	0	0	0	0.31617	1	4777	4777		26.884	1.4843	1	33191			30819	11818	17888	17889	37911	37911					0.07725636208613196
NPMKAGTQL	9	Oxidation (M)	_NPM(Oxidation (M))KAGTQL_		NPM(1)KAGTQL		NPM(130)KAGTQL	0	0	1		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2501525878906	2	488.250034	974.485516	0.16732	8.1695E-05	-0.29622	-0.00014463	-0.1289	-6.2935E-05	488.2499714223743	18.16	1.2599	18.16	17.835	19.095	0					130	43	5	0	0	0	0.00051734	2	1833	1833;1878		128.93	78.999	1	1836500			30820	4153	17889	17890	37912;37913	37912		534			-0.0027476284259364547
NPMKAGTQL	9	Oxidation (M)	_NPM(Oxidation (M))KAGTQL_		NPM(1)KAGTQL		NPM(140)KAGTQL	0	0	1		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2501220703125	2	488.250034	974.485516	0.1044	5.0973E-05	-0.22012	-0.00010748	-0.11572	-5.6502E-05	488.2499901696088	18.274	1.2742	18.156	17.84	19.114	-0.11739					128	44	4	0	0	0	0.00010125	3	1890	1841;1890;1931		140.63	85.86	1	2069900			30821	4153	17889	17890	37914;37915;37916	37915		534			-0.0027476284259364547
NPMKAGTQL	9	Oxidation (M)	_NPM(Oxidation (M))KAGTQL_		NPM(1)KAGTQL		NPM(140)KAGTQL	0	0	1		nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV;ENST00000460641.1_1_2:187529903-187532515:+|nuORF	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2501525878906	2	488.250034	974.485516	0.022805	1.1134E-05	-0.04763	-2.3255E-05	-0.024825	-1.2121E-05	488.2500431598595	18.283	1.4659	18.225	17.927	19.393	-0.058172					118	51	4	0	0	0	0.00010125	2	1882	1882;1925		140.63	98.794	1	2212300			30822	4153	17889	17890	37917;37918	37917		534			-0.0027476284259364547
NPNEEEPN	8	Unmodified	_NPNEEEPN_					0	0	0		ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2;NFATC2|p.G84Rfs*8|1|0.27|ENSG00000101096|chr20:51523991-51523992|-/G|frameshift_variant	ENSG00000101096|ENST00000371564|NFATC2	ENSG00000101096|ENST00000371564|NFATC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2057800292969	2	471.693603	941.372654	0.43264	0.00020407	-1.9374	-0.00091387	-1.5048	-0.0007098	471.69237499497325	76.805	0.33777	76.774	76.567	76.905	-0.031433					16	12	2	0	0	0	0.34131	1	19734	19734		12.532	6.7711	1	96328			30823	1662	17890	17891	37919	37919					-0.10037740034942999
NPNEKHSWG	9	Unmodified	_NPNEKHSWG_					0	0	0			REV__nc|ENSG00000118322|O94823-3|ATP10B	REV__nc|ENSG00000118322|O94823-3|ATP10B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.3197021484375	2	534.746505	1067.47846	0.60888	0.0003256	3.6173	0.0019343	4.2261	0.0022599	534.7488301607273	26.552	0.11214	26.529	26.472	26.584	-0.022236					5	3	2	0	0	0	0.24913	1	4401	4401		12.532	1.7076	1	29837	+		30824	22966	17891	17892	37920	37920					-0.05258359398817447
NPNLRIISL	9	Unmodified	_NPNLRIISL_					0	0	0		nc|ENSG00000172594|Q92484-2|SMPDL3A;ENSG00000172594|ENST00000368440|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3167724609375	2	520.316566	1038.61858	0.34868	0.00018142	-0.036131	-1.8799E-05	0.31255	0.00016262	520.3164844358209	59.186	0.83719	59.186	58.891	59.728	0					74	29	3	0	0	0	3.0646E-11	2	14411	14364;14411		193.29	121.37	1	2549300			30825	6650	17892	17893	37921;37922	37922					0.10081424605573375
NPNLRIISL	9	Unmodified	_NPNLRIISL_					0	0	0		nc|ENSG00000172594|Q92484-2|SMPDL3A;ENSG00000172594|ENST00000368440|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3167114257812	2	520.316566	1038.61858	0.36976	0.00019239	-0.10564	-5.4967E-05	0.26411	0.00013742	520.3164575457475	59.016	1.0303	59.108	58.764	59.795	0.091305					86	36	4	0	0	0	2.4752E-08	3	14342	14300;14342;14392		179.17	113.94	1	2553400			30826	6650	17892	17893	37923;37924;37925	37924					0.10081424605573375
NPNLRIISL	9	Unmodified	_NPNLRIISL_					0	0	0		nc|ENSG00000172594|Q92484-2|SMPDL3A;ENSG00000172594|ENST00000368440|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3167724609375	2	520.316566	1038.61858	0.47493	0.00024711	-0.169	-8.7936E-05	0.30593	0.00015918	520.3164477906168	59.121	0.95432	59.107	58.806	59.76	-0.014271					83	33	4	0	0	0	2.5511E-05	2	14388	14342;14388		152.89	96.709	1	2371600			30827	6650	17892	17893	37926;37927	37927					0.10081424605573375
NPNLRKNVL	9	Unmodified	_NPNLRKNVL_					0	0	0		ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.3197021484375	2	534.31964	1066.62473	0.40531	0.00021657	-1.3061	-0.00069788	-0.90081	-0.00048132	534.3187820538411	26.742	0.74167	26.742	26.379	27.121	0					47	25	2	0	0	0	0.0001234	1	4398	4398		141.83	91.894	1	1666500			30828	7704	17893	17894	37928	37928					0.09407942837083283
NPNLRKNVL	9	Unmodified	_NPNLRKNVL_					0	0	0		ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.3197021484375	2	534.31964	1066.62473	0.2777	0.00014838	-0.99811	-0.00053331	-0.72041	-0.00038493	534.3189451069812	26.726	0.70943	26.687	26.342	27.052	-0.038671					67	24	3	0	0	0	0.0011817	1	4397	4397		120.45	74.429	1	1767200			30829	7704	17893	17894	37929	37929					0.09407942837083283
NPNLRKNVL	9	Unmodified	_NPNLRKNVL_					0	0	0		ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.8040771484375	2	534.31964	1066.62473	0.13574	7.2526E-05	-0.3035	-0.00016217	-0.16777	-8.9642E-05	534.3195465114779	27.333	0.57202	27.311	27.069	27.641	-0.021412					39	19	3	0	0	0	0.23784	1	4588	4588		13.906	0.86358	1	416310			30830	7704	17893	17894	37930	37930					0.09407942837083283
NPNLRKNVL	9	Unmodified	_NPNLRKNVL_					0	0	0		ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.3197021484375	2	534.31964	1066.62473	0.61312	0.0003276	-1.3038	-0.00069666	-0.6907	-0.00036905	534.3187938710475	26.741	0.79367	26.73	26.339	27.132	-0.01156					71	27	3	0	0	0	0.00051458	1	4401	4401		128.37	82.344	1	1624600			30831	7704	17893	17894	37931	37931					0.09407942837083283
NPNQGMHMPPL	11	Unmodified	_NPNQGMHMPPL_					0	0	0			REV__ENSG00000173627|ENST00000308641|APOBEC4	REV__ENSG00000173627|ENST00000308641|APOBEC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.8943786621094	3	412.526842	1234.5587	-0.16349	-6.7445E-05	1.6249	0.0006703	1.4614	0.00060286	412.52761831483	21.949	1.0557	21.949	21.819	22.875	0					63	37	2	0	0	0	0.33085	1	3183	3183		2.8433	0	1	107260	+		30832	17795	17894	17895	37932	37932					-0.0491995739162121
NPNQNKNVAL	10	Unmodified	_NPNQNKNVAL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7985229492188	2	556.296362	1110.57817	0.12494	6.9501E-05	0.70805	0.00039389	0.83299	0.00046339	556.2964464191806	22.565	0.63857	22.565	22.331	22.969	0					46	21	3	0	0	0	0.29038	1	3175	3175		24.021	11.489	1	155100			30833	830	17895	17896	37933	37933					0.027304582151373324
NPNQNKNVAL	10	Unmodified	_NPNQNKNVAL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2963256835938	2	556.296362	1110.57817	0.12671	7.0491E-05	0.57257	0.00031852	0.69928	0.00038901	556.2963687737267	22.699	0.5881	22.611	22.379	22.967	-0.08761					45	20	3	0	0	0	0.12843	1	3218	3218		41.84	27.258	1	168870			30834	830	17895	17896	37934	37934					0.027304582151373324
NPNQNKNVAL	10	Unmodified	_NPNQNKNVAL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2965698242188	2	556.296362	1110.57817	0.089241	4.9645E-05	0.86179	0.00047941	0.95103	0.00052906	556.2963459439555	22.711	0.62984	22.666	22.347	22.977	-0.044867					49	21	3	0	0	0	0.21644	2	3203	3203;3253		30.637	18.105	1	176530			30835	830	17895	17896	37935;37936	37935					0.027304582151373324
NPPPLLLCCL	10	Unmodified	_NPPPLLLCCL_					0	0	0			REV__ENST00000488146.5_1_1:68942617-68947320:-|nuORF	REV__ENST00000488146.5_1_1:68942617-68947320:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.8196411132812	2	541.790481	1081.56641	0.72717	0.00039397	1.3976	0.00075721	2.1248	0.0011512	541.7911948570306	40.316	0.38152	40.408	40.176	40.557	0.09267					16	13	2	0	0	0	0.28898	1	8532	8532		11.64	0	1	243890	+		30836	13478	17896	17897	37937	37937					0.028888018759516854
NPPVPEELR	9	Unmodified	_NPPVPEELR_					0	0	0			REV__ENST00000562760.1_1_8:95651187-95651544:-|nuORF	REV__ENST00000562760.1_1_8:95651187-95651544:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.303466796875	2	525.782556	1049.55056	0.62335	0.00032775	-0.96126	-0.00050542	-0.33791	-0.00017767	526.2829660847041	40.668	0.45725	40.668	40.473	40.93	0					26	16	2	0	0	0	0.23749	1	8660	8660		20.415	2.2682	1	204220	+		30837	22319	17897	17898	37938	37938					0.027765549548803392
NPQERTLTL	9	Unmodified	_NPQERTLTL_					0	0	0		HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;HSP90AB1|p.I483Hfs*7|1|0.32|ENSG00000096384|chr6:44251866-44251867|-/C|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2933959960938	2	536.293288	1070.57202	0.45724	0.00024521	-0.44603	-0.00023921	0.011201	6.0068E-06	536.2930068901899	36.796	1.1459	36.883	36.595	37.741	0.08741					110	41	4	0	0	0	2.2231E-07	3	7477	7477;7521;7573		171.46	88.935	1	5084000			30838	1466	17898	17899	37939;37940;37941	37939					0.039559399836207376
NPQERTLTL	9	Unmodified	_NPQERTLTL_					0	0	0		HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;HSP90AB1|p.I483Hfs*7|1|0.32|ENSG00000096384|chr6:44251866-44251867|-/C|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	536.293288	1070.57202	0.75742	0.0004062	-0.74395	-0.00039898	0.01347	7.2238E-06	536.292863714602	36.944	1.0612	36.944	36.673	37.735	0	0.032622	-9.5852E-05	NaN	171.46	102	37	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4610200			30839	1466	17898	17899							0.039559399836207376
NPQERTLTL	9	Unmodified	_NPQERTLTL_					0	0	0		HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;HSP90AB1|p.I483Hfs*7|1|0.32|ENSG00000096384|chr6:44251866-44251867|-/C|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	536.293288	1070.57202	0.80817	0.00043342	-0.81131	-0.0004351	-0.0031394	-1.6836E-06	536.2928232206225	36.814	1.0448	36.907	36.633	37.678	0.093014	-0.0043761	-0.0001681	NaN	171.46	112	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4927100			30840	1466	17898	17899							0.039559399836207376
NPRALSFVL	9	Unmodified	_NPRALSFVL_					0	0	0		nc|ENSG00000089127|P00973-3|OAS1;OAS1|p.P281Lfs*19|1|0.27|ENSG00000089127|chr12:112916626-112916627|-/TCTTGGAATTAGTCATAAACTACCAGCAACTCTGCATCTACTGGACAAAGTATTATGACTTTAAAAA|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;OAS1|p.K364Ifs*8|1|0.21|ENSG00000089127|chr12:112919440-112919441|AA/-|frameshift_variant;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	nc|ENSG00000089127|P00973-3|OAS1	nc|ENSG00000089127|P00973-3|OAS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7980041503906	2	508.798009	1015.58147	0.073216	3.7252E-05	0.96472	0.00049085	1.0379	0.0005281	508.7988689213937	60.269	1.4399	60.269	59.38	60.819	0					117	51	4	0	0	0	0.0042138	2	14772	14724;14772		92.653	31.296	1	3849400			30841	12603	17899	17900	37942;37943	37943					0.07429753059807354
NPRALSFVL	9	Unmodified	_NPRALSFVL_					0	0	0		nc|ENSG00000089127|P00973-3|OAS1;OAS1|p.P281Lfs*19|1|0.27|ENSG00000089127|chr12:112916626-112916627|-/TCTTGGAATTAGTCATAAACTACCAGCAACTCTGCATCTACTGGACAAAGTATTATGACTTTAAAAA|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;OAS1|p.K364Ifs*8|1|0.21|ENSG00000089127|chr12:112919440-112919441|AA/-|frameshift_variant;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	nc|ENSG00000089127|P00973-3|OAS1	nc|ENSG00000089127|P00973-3|OAS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7978515625	2	508.798009	1015.58147	-0.22643	-0.00011521	0.9759	0.00049653	0.74946	0.00038133	508.79897733968403	60.171	1.3752	60.266	59.464	60.839	0.095093					103	49	4	0	0	0	0.0079761	2	14685	14685;14732		82.529	30.261	1	3711000			30842	12603	17899	17900	37944;37945	37944					0.07429753059807354
NPRALSFVL	9	Unmodified	_NPRALSFVL_					0	0	0		nc|ENSG00000089127|P00973-3|OAS1;OAS1|p.P281Lfs*19|1|0.27|ENSG00000089127|chr12:112916626-112916627|-/TCTTGGAATTAGTCATAAACTACCAGCAACTCTGCATCTACTGGACAAAGTATTATGACTTTAAAAA|frameshift_variant;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;OAS1|p.K364Ifs*8|1|0.21|ENSG00000089127|chr12:112919440-112919441|AA/-|frameshift_variant;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF	nc|ENSG00000089127|P00973-3|OAS1	nc|ENSG00000089127|P00973-3|OAS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7979736328125	2	508.798009	1015.58147	0.20158	0.00010257	0.76855	0.00039103	0.97013	0.0004936	508.7988156533876	60.292	1.3959	60.28	59.49	60.886	-0.011486					103	50	4	0	0	0	0.0098873	3	14720	14720;14766;14855		79.596	27.328	1	3808200			30843	12603	17899	17900	37946;37947;37948	37946					0.07429753059807354
NPRAMQALL	9	Oxidation (M)	_NPRAM(Oxidation (M))QALL_		NPRAM(1)QALL		NPRAM(65)QALL	0	0	1		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;nc|ENSG00000135018|Q9UMX0-3|UBQLN1;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4	nc|ENSG00000135018|Q9UMX0-2|UBQLN1;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2792358398438	2	515.279126	1028.5437	0.41043	0.00021148	0.20295	0.00010458	0.61338	0.00031606	515.2791839478373	31.947	0.96802	31.947	31.694	32.662	0					59	34	2	0	0	0	0.019245	2	6018	6018;6076		65.235	37.606	1	1512100			30844	3838;5491	17900	17901	37949;37950	37949		478			0.03056918802690234
NPRAMQALL	9	Oxidation (M)	_NPRAM(Oxidation (M))QALL_		NPRAM(1)QALL		NPRAM(55)QALL	0	0	1		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;nc|ENSG00000135018|Q9UMX0-3|UBQLN1;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4	nc|ENSG00000135018|Q9UMX0-2|UBQLN1;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2791748046875	2	515.279126	1028.5437	0.39906	0.00020563	0.036389	1.875E-05	0.43545	0.00022438	515.2791119694422	31.864	0.78542	31.906	31.652	32.437	0.042364					66	27	3	0	0	0	0.044952	2	6050	6000;6050		54.774	24.64	1	1319500			30845	3838;5491	17900	17901	37951;37952	37952		478			0.03056918802690234
NPRAMQALL	9	Oxidation (M)	_NPRAM(Oxidation (M))QALL_		NPRAM(1)QALL		NPRAM(59)QALL	0	0	1		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;nc|ENSG00000135018|Q9UMX0-3|UBQLN1;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4	nc|ENSG00000135018|Q9UMX0-2|UBQLN1;UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2794189453125	2	515.279126	1028.5437	0.23131	0.00011919	0.4528	0.00023332	0.68411	0.00035251	515.2793166469115	31.905	0.94263	31.946	31.647	32.59	0.040991					63	33	2	0	0	0	0.034444	2	5990	5990;6047		58.679	31.05	1	1115000			30846	3838;5491	17900	17901	37953;37954	37953		478			0.03056918802690234
NPRCQKPFF	9	Unmodified	_NPRCQKPFF_					0	0	0		nc|ENSG00000184347|O75094-2|SLIT3;nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3	nc|ENSG00000184347|O75094-2|SLIT3	nc|ENSG00000184347|O75094-2|SLIT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.763916015625	2	568.787118	1135.55968	0.41785	0.00023767	-4.0967	-0.0023302	-3.6789	-0.0020925	568.7840402479571	29.84	0.25649	29.852	29.72	29.976	0.012266					9	8	2	0	0	0	0.25622	1	5365	5365		3.9444	0	1	39649			30847	7445	17901	17902	37955	37955					-0.00267374960435518
NPRDLFGSL	9	Unmodified	_NPRDLFGSL_					0	0	0		nc|ENSG00000136305|Q9UHD4|CIDEB	nc|ENSG00000136305|Q9UHD4|CIDEB	nc|ENSG00000136305|Q9UHD4|CIDEB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7694396972656	2	509.769448	1017.52434	0.30191	0.0001539	0.11497	5.861E-05	0.41688	0.00021251	509.7696241425046	57.557	0.92344	57.643	57.437	58.36	0.085621					76	33	3	0	0	0	0.17263	1	13880	13880		32.037	2.1969	1	846810			30848	12716	17902	17903	37956	37956					0.01628285783431238
NPRFGGKEL	9	Unmodified	_NPRFGGKEL_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2776184082031	2	509.277441	1016.54033	0.2425	0.0001235	-0.66554	-0.00033895	-0.42305	-0.00021545	509.27696146170223	26.803	0.42155	26.803	26.586	27.007	0					21	14	2	0	0	0	0.23767	1	4479	4479		18.146	0.011366	1	149710			30849	1056	17903	17904	37957	37957					0.03271992020347625
NPRFGGKEL	9	Unmodified	_NPRFGGKEL_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2776184082031	2	509.277441	1016.54033	0.23133	0.00011781	0.051841	2.6402E-05	0.28317	0.00014421	509.27687482086935	26.803	0.56429	26.781	26.536	27.1	-0.021412					36	19	3	0	0	0	0.11461	1	4477	4477		36.127	5.4905	1	170010			30850	1056	17903	17904	37958	37958					0.03271992020347625
NPRFGGKEL	9	Unmodified	_NPRFGGKEL_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	509.277441	1016.54033	0.35187	0.0001792	-1.0256	-0.0005223	-0.6737	-0.0003431	509.27688462213086	26.896	0.55846	26.885	26.681	27.239	-0.01156	0.061568	-0.00035107	NaN	36.127	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163610			30851	1056	17903	17904							0.03271992020347625
NPRIPYTEL	9	Unmodified	_NPRIPYTEL_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.853271484375	2	551.798206	1101.58186	0.60988	0.00033653	-0.43776	-0.00024156	0.17212	9.4976E-05	551.7982556942234	51.069	0.9687	51.069	50.623	51.592	0					83	35	3	0	0	0	0.0045335	1	11922	11922		106.94	68.966	1	1120800			30852	2211	17904	17905	37959	37959					0.035131279889810685
NPRIPYTEL	9	Unmodified	_NPRIPYTEL_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8534545898438	2	551.798206	1101.58186	0.51743	0.00028552	-0.40834	-0.00022532	0.10909	6.0195E-05	551.7982809582447	51.076	0.85287	51.123	50.794	51.647	0.046574					83	31	3	0	0	0	0.0073667	1	11865	11865		96.367	50.667	1	987010			30853	2211	17904	17905	37960	37960					0.035131279889810685
NPRIPYTEL	9	Unmodified	_NPRIPYTEL_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.853271484375	2	551.798206	1101.58186	0.50388	0.00027804	-0.49468	-0.00027296	0.0092	5.0766E-06	551.7983393112944	51.177	1.56	51.186	50.783	52.343	0.0095634					122	58	4	0	0	0	0.00058103	1	11908	11908		129.77	75.94	1	1107900			30854	2211	17904	17905	37961	37961					0.035131279889810685
NPRKHITSL	9	Unmodified	_NPRKHITSL_					0	0	0		ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF;ENST00000507549.7_1_5:69717595-69723542:+|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF	ENST00000522654.5_1_5:70344846-70358599:-|nuORF	ENST00000522654.5_1_5:70344846-70358599:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.31201171875	2	533.311815	1064.60908	0.40376	0.00021533	-0.12769	-6.81E-05	0.27607	0.00014723	533.3117297649459	16.629	0.69218	16.629	16.377	17.069	0					60	23	4	0	0	0	0.0013683	2	1375	1375;1420		118.07	64.236	1	1107800			30855	4670	17905	17906	37962;37963	37962					0.07935656320046292
NPRKHITSL	9	Unmodified	_NPRKHITSL_					0	0	0		ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF;ENST00000507549.7_1_5:69717595-69723542:+|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF	ENST00000522654.5_1_5:70344846-70358599:-|nuORF	ENST00000522654.5_1_5:70344846-70358599:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3119506835938	2	533.311815	1064.60908	0.14424	7.6926E-05	0.29241	0.00015594	0.43665	0.00023287	533.3119199721635	16.738	0.83476	16.624	16.33	17.165	-0.11434					68	29	4	0	0	0	0.0013683	2	1407	1407;1458		118.07	59.39	1	1063300			30856	4670	17905	17906	37964;37965	37964					0.07935656320046292
NPRKHITSL	9	Unmodified	_NPRKHITSL_					0	0	0		ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF;ENST00000507549.7_1_5:69717595-69723542:+|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF	ENST00000522654.5_1_5:70344846-70358599:-|nuORF	ENST00000522654.5_1_5:70344846-70358599:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3121337890625	2	533.311815	1064.60908	0.4639	0.0002474	-0.004049	-2.1594E-06	0.45985	0.00024525	533.311774603599	16.681	0.80284	16.619	16.324	17.127	-0.062534					68	28	4	0	0	0	0.0024096	2	1379	1379;1423		106.94	65.101	1	969170			30857	4670	17905	17906	37966;37967	37966					0.07935656320046292
NPRLIYARL	9	Unmodified	_NPRLIYARL_					0	0	0		ENSG00000242110|ENST00000335606|AMACR;nc|ENSG00000242110|Q9UHK6-5|AMACR;ENST00000382079.3_1_5:33989591-34020782:-|nuORF;nc|ENSG00000242110|Q9UHK6-4|AMACR;nc|ENSG00000242110|Q9UHK6-2|AMACR	ENSG00000242110|ENST00000335606|AMACR	ENSG00000242110|ENST00000335606|AMACR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.337646484375	2	558.337833	1114.66111	0.28704	0.00016026	-0.1038	-5.7957E-05	0.18323	0.00010231	558.337625511712	42.281	0.59359	42.372	42.151	42.744	0.091362					35	20	2	0	0	0	0.034444	1	9202	9202		58.679	35.943	1	734170			30858	8540	17906	17907	37968	37968					0.10836819733776792
NPRLIYARL	9	Unmodified	_NPRLIYARL_					0	0	0		ENSG00000242110|ENST00000335606|AMACR;nc|ENSG00000242110|Q9UHK6-5|AMACR;ENST00000382079.3_1_5:33989591-34020782:-|nuORF;nc|ENSG00000242110|Q9UHK6-4|AMACR;nc|ENSG00000242110|Q9UHK6-2|AMACR	ENSG00000242110|ENST00000335606|AMACR	ENSG00000242110|ENST00000335606|AMACR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	558.337833	1114.66111	0.10368	5.7886E-05	0.32043	0.00017891	0.42411	0.00023679	558.3378975661424	42.663	0.67957	42.663	42.383	43.062	0	0.17026	0.00023532	NaN	58.679	45	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	665330			30859	8540	17906	17907							0.10836819733776792
NPRLLRVAL	9	Unmodified	_NPRLLRVAL_					0	0	0		ENST00000502974.1_1_4:74904133-74904340:-|nuORF;ENST00000510048.1_1_4:74964514-74964837:-|nuORF;ENST00000510390.1_1_4:74903808-74904340:-|nuORF;ENST00000509101.1_1_4:74735175-74735707:+|nuORF;ENSG00000163739|ENST00000395761|CXCL1;ENSG00000163734|ENST00000296026|CXCL3;ENSG00000081041|ENST00000508487|CXCL2;ENST00000511669.1_1_4:74904005-74904475:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3406982421875	2	526.340375	1050.6662	0.61645	0.00032446	0.10896	5.7352E-05	0.72541	0.00038181	526.3403499603518	45.123	0.94643	45.123	44.829	45.776	0					81	34	3	0	0	0	0.0046874	2	10042	10042;10094		88.904	38.971	1	2214400			30860	1176	17907	17908	37969;37970	37969					0.14289123596404352
NPRLLRVAL	9	Unmodified	_NPRLLRVAL_					0	0	0		ENST00000502974.1_1_4:74904133-74904340:-|nuORF;ENST00000510048.1_1_4:74964514-74964837:-|nuORF;ENST00000510390.1_1_4:74903808-74904340:-|nuORF;ENST00000509101.1_1_4:74735175-74735707:+|nuORF;ENSG00000163739|ENST00000395761|CXCL1;ENSG00000163734|ENST00000296026|CXCL3;ENSG00000081041|ENST00000508487|CXCL2;ENST00000511669.1_1_4:74904005-74904475:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3405151367188	2	526.340375	1050.6662	0.55568	0.00029248	0.057847	3.0447E-05	0.61353	0.00032293	526.3403413458612	44.935	0.91689	45.004	44.739	45.656	0.068569					74	32	3	0	0	0	0.0046874	1	9993	9993		88.904	38.971	1	2439800			30861	1176	17907	17908	37971	37971					0.14289123596404352
NPRLLRVAL	9	Unmodified	_NPRLLRVAL_					0	0	0		ENST00000502974.1_1_4:74904133-74904340:-|nuORF;ENST00000510048.1_1_4:74964514-74964837:-|nuORF;ENST00000510390.1_1_4:74903808-74904340:-|nuORF;ENST00000509101.1_1_4:74735175-74735707:+|nuORF;ENSG00000163739|ENST00000395761|CXCL1;ENSG00000163734|ENST00000296026|CXCL3;ENSG00000081041|ENST00000508487|CXCL2;ENST00000511669.1_1_4:74904005-74904475:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.340576171875	2	526.340375	1050.6662	0.65012	0.00034219	-0.045082	-2.3728E-05	0.60504	0.00031846	526.3403170059563	44.965	1.12	45.04	44.643	45.763	0.075047					88	38	4	0	0	0	0.034444	2	9988	9988;10074		58.679	24.277	1	2318500			30862	1176	17907	17908	37972;37973	37972					0.14289123596404352
NPRLNILDTL	10	Unmodified	_NPRLNILDTL_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000496925.5_1_3:184023699-184025408:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.8387451171875	2	584.837862	1167.66117	0.18116	0.00010595	1.0733	0.00062773	1.2545	0.00073368	584.8385916235716	64.956	0.67443	64.956	64.699	65.373	0					47	24	3	0	0	0	0.005261	1	16180	16180		90.135	59.498	1	466830			30863	6843	17908	17909	37974	37974					0.08404774943142002
NPRLNILDTL	10	Unmodified	_NPRLNILDTL_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000496925.5_1_3:184023699-184025408:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.8380737304688	2	584.837862	1167.66117	0.25059	0.00014655	0.93467	0.00054663	1.1853	0.00069319	584.8385295480794	64.837	0.50575	64.93	64.688	65.194	0.092888					40	18	3	0	0	0	0.023567	1	16119	16119		67.838	46.301	1	506140			30864	6843	17908	17909	37975	37975					0.08404774943142002
NPRLNILDTL	10	Unmodified	_NPRLNILDTL_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000496925.5_1_3:184023699-184025408:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	584.837862	1167.66117	0.1035	6.0533E-05	1.584	0.00092639	1.6875	0.00098692	584.838935019247	64.97	0.56709	64.958	64.721	65.288	-0.011337	0.010134	0.00046302	NaN	90.135	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463600			30865	6843	17908	17909							0.08404774943142002
NPRNFSDNQL	10	Unmodified	_NPRNFSDNQL_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.7884521484375	2	602.788901	1203.56325	0.47965	0.00028913	-0.48008	-0.00028938	-0.00042056	-2.5351E-07	602.7885579494239	33.362	0.87825	33.362	33.091	33.969	0					73	31	4	0	0	0	2.2521E-05	2	6498	6446;6498		142.92	89.515	1	1041000			30866	5369	17909	17910	37976;37977	37977					-0.030390336528625994
NPRNFSDNQL	10	Unmodified	_NPRNFSDNQL_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.7890625	2	602.788901	1203.56325	0.54775	0.00033018	-0.44372	-0.00026747	0.10402	6.2704E-05	602.7885418106074	33.248	0.7464	33.304	33.002	33.749	0.055309					69	26	4	0	0	0	4.6494E-06	2	6422	6422;6473		154.04	108.3	1	1032000			30867	5369	17909	17910	37978;37979	37978					-0.030390336528625994
NPRNFSDNQL	10	Unmodified	_NPRNFSDNQL_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.7894897460938	2	602.788901	1203.56325	0.22619	0.00013634	0.13796	8.3159E-05	0.36415	0.0002195	602.7889662577305	33.235	0.71822	33.289	33.069	33.787	0.054371					66	25	4	0	0	0	1.5248E-08	2	6408	6408;6464		161.44	113.7	1	1236500			30868	5369	17909	17910	37980;37981	37980					-0.030390336528625994
NPRPTAQDL	9	Unmodified	_NPRPTAQDL_					0	0	0		nc|ENSG00000080845|Q9Y2H0-3|DLGAP4;nc|ENSG00000080845|Q9Y2H0-1|DLGAP4;ENSG00000080845|ENST00000339266|DLGAP4	nc|ENSG00000080845|Q9Y2H0-3|DLGAP4	nc|ENSG00000080845|Q9Y2H0-3|DLGAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2738037109375	2	506.26453	1010.51451	0.21833	0.00011053	-0.43921	-0.00022236	-0.22088	-0.00011182	506.2643086655916	26.591	0.37369	26.591	26.44	26.813	0					23	12	2	0	0	0	0.016571	1	4396	4396		69.338	23.317	1	256150			30869	1169	17910	17911	37982	37982					0.009670977780388057
NPRPTAQDL	9	Unmodified	_NPRPTAQDL_					0	0	0		nc|ENSG00000080845|Q9Y2H0-3|DLGAP4;nc|ENSG00000080845|Q9Y2H0-1|DLGAP4;ENSG00000080845|ENST00000339266|DLGAP4	nc|ENSG00000080845|Q9Y2H0-3|DLGAP4	nc|ENSG00000080845|Q9Y2H0-3|DLGAP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.27374267578125	2	506.26453	1010.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.55	1	26.512	26.012	27.012	-0.038671								0	0	0	0.042243	1	4390	4390		63.227	25.253	1				30870	1169	17910	17911	37983	37983					0.009670977780388057
NPRPTAQDL	9	Unmodified	_NPRPTAQDL_					0	0	0		nc|ENSG00000080845|Q9Y2H0-3|DLGAP4;nc|ENSG00000080845|Q9Y2H0-1|DLGAP4;ENSG00000080845|ENST00000339266|DLGAP4	nc|ENSG00000080845|Q9Y2H0-3|DLGAP4	nc|ENSG00000080845|Q9Y2H0-3|DLGAP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2738342285156	2	506.26453	1010.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.654	1	26.632	26.132	27.132	-0.022238								0	0	0	0.015736	1	4417	4417		71.708	25.687	1				30871	1169	17910	17911	37984	37984					0.009670977780388057
NPRQAAYEM	9	Oxidation (M)	_NPRQAAYEM(Oxidation (M))_		NPRQAAYEM(1)		NPRQAAYEM(110)	0	0	1		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2484130859375	2	548.248023	1094.48149	0.39743	0.00021789	0.18562	0.00010177	0.58305	0.00031966	548.2480322917709	17.295	0.94863	17.295	16.981	17.93	0					76	32	3	0	0	0	0.0016712	3	1599	1555;1599;1641		114.2	83.565	1	401930			30872	1337	17911	17912	37985;37986;37987	37986		166			-0.061968523363248096
NPRQAAYEM	9	Oxidation (M)	_NPRQAAYEM(Oxidation (M))_		NPRQAAYEM(1)		NPRQAAYEM(110)	0	0	1		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2484130859375	2	548.248023	1094.48149	0.31758	0.00017411	0.23136	0.00012684	0.54894	0.00030096	548.2481133999286	17.53	0.84683	17.413	17.081	17.928	-0.11739					68	29	3	0	0	0	0.0016712	2	1660	1615;1660		114.2	87.318	1	413470			30873	1337	17911	17912	37988;37989	37989		166			-0.061968523363248096
NPRQAAYEM	9	Oxidation (M)	_NPRQAAYEM(Oxidation (M))_		NPRQAAYEM(1)		NPRQAAYEM(110)	0	0	1		nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.248291015625	2	548.248023	1094.48149	0.48932	0.00026827	0.053082	2.9102E-05	0.54241	0.00029737	548.2480006923611	17.392	0.90056	17.332	17.051	17.951	-0.060429					71	31	3	0	0	0	0.0016712	2	1638	1588;1638		114.2	85.715	1	433510			30874	1337	17911	17912	37990;37991	37991		166			-0.061968523363248096
NPRQINWTVL	10	Unmodified	_NPRQINWTVL_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.2568359375	2	620.843479	1239.67241	0.30604	0.00019	0.20929	0.00012994	0.51533	0.00031994	620.8435358453111	58.822	0.39902	58.822	58.682	59.081	0					29	13	3	0	0	0	0.31094	1	14269	14269		17.113	0	1	342650			30875	2563	17912	17913	37992	37992					0.062155970372714364
NPRQINWTVL	10	Unmodified	_NPRQINWTVL_					0	0	0		ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	ENSG00000114391|ENST00000394077|RPL24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.8433837890625	2	620.843479	1239.67241	0.16123	0.0001001	0.16951	0.00010524	0.33074	0.00020534	620.8435739091066	58.673	0.48746	58.764	58.56	59.047	0.091305					34	16	3	0	0	0	0.21126	1	14222	14222		31.268	9.7314	1	313550			30876	2563	17912	17913	37993	37993					0.062155970372714364
NPRQPLPASGL	11	Unmodified	_NPRQPLPASGL_					0	0	0		nc|ENSG00000157303|Q96L08-3|SUSD3;nc|ENSG00000157303|Q96L08-2|SUSD3;ENSG00000157303|ENST00000375472|SUSD3	nc|ENSG00000157303|Q96L08-3|SUSD3	nc|ENSG00000157303|Q96L08-3|SUSD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.322509765625	2	575.32238	1148.63021	-0.14018	-8.065E-05	0.57367	0.00033005	0.43349	0.0002494	575.3229612870637	39.278	0.55697	39.278	39.012	39.569	0					33	19	2	0	0	0	0.074971	1	8278	8278		46.022	26.66	1	220220			30877	5294	17913	17914	37994	37994					0.061836216289066215
NPRQPLPASGL	11	Unmodified	_NPRQPLPASGL_					0	0	0		nc|ENSG00000157303|Q96L08-3|SUSD3;nc|ENSG00000157303|Q96L08-2|SUSD3;ENSG00000157303|ENST00000375472|SUSD3	nc|ENSG00000157303|Q96L08-3|SUSD3	nc|ENSG00000157303|Q96L08-3|SUSD3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	575.32238	1148.63021	0.35568	0.00020463	0.042817	2.4633E-05	0.3985	0.00022926	575.3227939095262	39.087	0.47078	39.187	38.953	39.424	0.099403	-0.033772	-0.00026788	NaN	46.022	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273090			30878	5294	17913	17914							0.061836216289066215
NPRSVTLLI	9	Unmodified	_NPRSVTLLI_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.8112487792969	2	506.811116	1011.60768	0.30417	0.00015416	0.1636	8.2914E-05	0.46777	0.00023707	506.81113695426205	53.387	1.264	53.443	53.111	54.375	0.056255					128	47	4	0	0	0	0.04299	1	12621	12621		55.503	7.1569	1	5329400			30879	4724	17914	17915	37995	37995					0.10234022231293238
NPRSVTLLI	9	Unmodified	_NPRSVTLLI_					0	0	0		nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	nc|ENSG00000146731|P40227-2|CCT6A	nc|ENSG00000146731|P40227-2|CCT6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.81121826171875	2	506.811116	1011.60768	0.38914	0.00019722	0.087449	4.432E-05	0.47659	0.00024154	506.8110871983715	53.496	1.1502	53.486	53.192	54.342	-0.0096054					111	42	5	0	0	0	0.032589	1	12649	12649		59.368	11.023	1	5444900			30880	4724	17914	17915	37996	37996					0.10234022231293238
NPRTKALVL	9	Unmodified	_NPRTKALVL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;ENST00000587856.1_1_17:43311355-43318139:+|nuORF;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000184922|ENST00000331495|FMNL1	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3191223144531	2	506.319109	1010.62366	0.07194	3.6425E-05	0.14994	7.5918E-05	0.22188	0.00011234	506.31911558936497	28.362	0.96733	28.362	28.094	29.062	0					77	33	4	0	0	0	0.0079761	2	4950	4899;4950		82.529	28.954	1	1560100			30881	5528;7482	17915	17916	37997;37998	37998					0.11877728468152782
NPRTKALVL	9	Unmodified	_NPRTKALVL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;ENST00000587856.1_1_17:43311355-43318139:+|nuORF;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000184922|ENST00000331495|FMNL1	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.319091796875	2	506.319109	1010.62366	0.09213	4.6647E-05	0.095194	4.8199E-05	0.18732	9.4846E-05	506.31910081847474	28.338	0.87296	28.334	28.055	28.928	-0.0042572					79	30	4	0	0	0	0.0079761	2	4945	4898;4945		82.529	42.572	1	1581200			30882	5528;7482	17915	17916	37999;38000	38000					0.11877728468152782
NPRTKALVL	9	Unmodified	_NPRTKALVL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;ENST00000587856.1_1_17:43311355-43318139:+|nuORF;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1	nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000184922|ENST00000331495|FMNL1	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.319091796875	2	506.319109	1010.62366	0.0043478	2.2014E-06	0.15593	7.8949E-05	0.16028	8.115E-05	506.319125180101	28.338	0.96882	28.339	28.051	29.02	0.0004673					74	34	3	0	0	0	0.014206	3	4937	4892;4937;4980		72.968	28.561	1	1498800			30883	5528;7482	17915	17916	38001;38002;38003	38002					0.11877728468152782
NPRTQTHATL	10	Unmodified	_NPRTQTHATL_					0	0	0		ENSG00000188641|ENST00000370192|DPYD;ENST00000460019.1_1_1:98320884-98386532:-|nuORF;nc|ENSG00000188641|Q12882-2|DPYD	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.8015747070312	2	569.801811	1137.58907	0.15385	8.7663E-05	-0.072338	-4.1218E-05	0.08151	4.6445E-05	569.8017309153491	16.637	0.40186	16.637	16.377	16.779	0					28	13	3	0	0	0	0.324	1	1370	1370		17.443	8.0595	1	135030			30884	7762	17916	17917	38004	38004					0.02577860589417469
NPRTQTHATL	10	Unmodified	_NPRTQTHATL_					0	0	0		ENSG00000188641|ENST00000370192|DPYD;ENST00000460019.1_1_1:98320884-98386532:-|nuORF;nc|ENSG00000188641|Q12882-2|DPYD	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.8016967773438	2	569.801811	1137.58907	0.16375	9.3307E-05	-0.036341	-2.0707E-05	0.12741	7.2599E-05	569.8018179733785	16.73	0.40861	16.615	16.395	16.803	-0.11434					32	14	3	0	0	0	0.16374	1	1424	1424		37.075	24.032	1	143710			30885	7762	17916	17917	38005	38005					0.02577860589417469
NPRTQTHATL	10	Unmodified	_NPRTQTHATL_					0	0	0		ENSG00000188641|ENST00000370192|DPYD;ENST00000460019.1_1_1:98320884-98386532:-|nuORF;nc|ENSG00000188641|Q12882-2|DPYD	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.8020629882812	2	569.801811	1137.58907	0.23496	0.00013388	-0.12064	-6.8743E-05	0.11431	6.5136E-05	569.8016825165187	16.614	0.37872	16.552	16.351	16.729	-0.062532					35	12	4	0	0	0	0.324	2	1362	1362;1410		17.443	8.0595	1	156010			30886	7762	17916	17917	38006;38007	38006					0.02577860589417469
NPRVKAAAL	9	Unmodified	_NPRVKAAAL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1;ENST00000477888.1_1_9:94842274-94843223:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2903137207031	2	470.290351	938.566149	0.12761	6.0012E-05	-0.05094	-2.3956E-05	0.076668	3.6056E-05	470.2902257258926	20.458	1.1937	20.458	20.207	21.401	0					100	41	4	0	0	0	0.00268	3	2559	2515;2559;2608		104.8	51.224	1	1175200			30887	1368	17917	17918	38008;38009;38010	38009					0.09440886262598269
NPRVKAAAL	9	Unmodified	_NPRVKAAAL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1;ENST00000477888.1_1_9:94842274-94843223:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2904052734375	2	470.290351	938.566149	0.41265	0.00019407	-0.3614	-0.00016996	0.051251	2.4103E-05	470.29009351880944	20.677	0.94856	20.567	20.35	21.298	-0.11003					80	32	4	0	0	0	0.0041925	2	2599	2599;2649		92.822	39.247	1	1346100			30888	1368	17917	17918	38011;38012	38011					0.09440886262598269
NPSANNQLLV	10	Unmodified	_NPSANNQLLV_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.8306884765625	2	535.285463	1068.55637	0.11138	5.9621E-05	1.4397	0.00077065	1.5511	0.00083027	535.787096709405	27.393	0.33543	27.371	27.158	27.493	-0.021412					18	11	2	0	0	0	0.31847	1	4659	4659		6.7232	0.51738	1	85720	+		30889	16529	17918	17919	38013	38013					0.02483653466561009
NPSARLTAL	9	Unmodified	_NPSARLTAL_					0	0	0		ENSG00000139567|ENST00000388922|ACVRL1;ENSG00000115170|ENST00000434821|ACVR1	ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.7719421386719	2	471.771991	941.529429	0.40059	0.00018899	-0.31422	-0.00014824	0.086368	4.0746E-05	471.7717283585967	37.621	0.83315	37.621	37.259	38.092	0					82	29	4	0	0	0	0.0019382	2	7780	7731;7780		110.79	27.364	1	1042700			30890	4245	17919	17920	38014;38015	38015					0.056325896460293734
NPSARLTAL	9	Unmodified	_NPSARLTAL_					0	0	0		ENSG00000139567|ENST00000388922|ACVRL1;ENSG00000115170|ENST00000434821|ACVR1	ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7717590332031	2	471.771991	941.529429	0.23415	0.00011047	-0.32561	-0.00015361	-0.091458	-4.3147E-05	471.7717793201604	37.56	0.90428	37.648	37.193	38.098	0.08741					74	32	3	0	0	0	0.003673	2	7717	7717;7766		96.936	26.604	1	1142300			30891	4245	17919	17920	38016;38017	38016					0.056325896460293734
NPSARLTAL	9	Unmodified	_NPSARLTAL_					0	0	0		ENSG00000139567|ENST00000388922|ACVRL1;ENSG00000115170|ENST00000434821|ACVR1	ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.77203369140625	2	471.771991	941.529429	0.24236	0.00011434	-0.32117	-0.00015152	-0.078812	-3.7181E-05	471.7717871868601	37.47	0.92324	37.563	37.222	38.145	0.093014					75	33	3	0	0	0	0.0028032	2	7692	7692;7736		103.82	26.999	1	1030100			30892	4245	17919	17920	38018;38019	38018					0.056325896460293734
NPSDVPEKPR	10	Unmodified	_NPSDVPEKPR_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.24462890625	2	569.796195	1137.57784	-0.014444	-8.2301E-06	0.513	0.00029231	0.49856	0.00028408	569.7963245157783	13.838	0.36494	13.734	13.568	13.933	-0.10466					28	12	3	0	0	0	0.31926	1	568	568		5.7319	1.4026	1	126490			30893	407	17920	17921	38020	38020					0.01455038495282679
NPSERRFGIL	10	Unmodified	_NPSERRFGIL_					0	0	0		nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.828125	2	594.827829	1187.64111	0.58805	0.00034979	0.032166	1.9133E-05	0.62022	0.00036892	594.8278071649111	40.341	1.0963	40.341	39.914	41.01	0					96	39	4	0	0	0	0.0012277	4	8580	8535;8580;8626;8677		117.76	86.492	1	2485600			30894	3716	17921	17922	38021;38022;38023;38024	38022					0.054790240031934445
NPSERRFGIL	10	Unmodified	_NPSERRFGIL_					0	0	0		nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.828125	2	594.827829	1187.64111	0.7011	0.00041703	-0.061409	-3.6528E-05	0.63969	0.0003805	594.8277535306148	40.056	0.9948	40.149	39.83	40.824	0.09267					90	35	4	0	0	0	0.0053869	3	8514	8468;8514;8567		89.401	67.864	1	2310300			30895	3716	17921	17922	38025;38026;38027	38026					0.054790240031934445
NPSERRFGIL	10	Unmodified	_NPSERRFGIL_					0	0	0		nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8281860351562	2	594.827829	1187.64111	0.49619	0.00029515	0.17325	0.00010306	0.66944	0.0003982	594.827871692872	40.016	1.0475	40.116	39.788	40.835	0.099407					85	37	4	0	0	0	0.0072369	3	8502	8455;8502;8548		85.642	61.621	1	2543900			30896	3716	17921	17922	38028;38029;38030	38029					0.054790240031934445
NPSKNREATV	10	Unmodified	_NPSKNREATV_					0	0	0		TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant	TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2933959960938	2	558.293819	1114.57309	-0.035454	-1.9794E-05	0.1125	6.2808E-05	0.077046	4.3014E-05	558.2937875341572	13.219	0.36938	13.219	13.058	13.427	0					31	12	4	0	0	0	0.35624	1	362	362		11.518	4.7947	1	145240			30897	1724	17922	17923	38031	38031					0.02038154352521815
NPSKNREATV	10	Unmodified	_NPSKNREATV_					0	0	0		TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant	TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2938842773438	2	558.293819	1114.57309	-0.011904	-6.6459E-06	-0.24399	-0.00013622	-0.25589	-0.00014286	558.2937095853669	13.302	0.32039	13.203	13.069	13.389	-0.099291					23	10	3	0	0	0	0.24437	1	392	392		27.223	10.11	1	144610			30898	1724	17922	17923	38032	38032					0.02038154352521815
NPSKNREATV	10	Unmodified	_NPSKNREATV_					0	0	0		TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X	TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant	TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2935791015625	2	558.293819	1114.57309	-0.14122	-7.8844E-05	0.13723	7.6617E-05	-0.003988	-2.2265E-06	558.2937729758198	13.287	0.41913	13.22	13.073	13.493	-0.067495					29	14	3	0	0	0	0.33753	1	378	378		14.957	6.8016	1	136890			30899	1724	17922	17923	38033	38033					0.02038154352521815
NPSQYRFEHL	10	Unmodified	_NPSQYRFEHL_					0	0	0		ENSG00000172432|ENST00000307126|GTPBP2	ENSG00000172432|ENST00000307126|GTPBP2	ENSG00000172432|ENST00000307126|GTPBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.9604187011719	3	430.879038	1289.61528	0.34524	0.00014876	-0.29513	-0.00012716	0.050119	2.1595E-05	430.87879351535577	37.415	0.46355	37.415	37.124	37.587	0					37	16	3	0	0	0	0.3037	1	7674	7674		14.838	10.992	1	270270			30900	6633	17923	17924	38034	38034					-0.017938702390893013
NPSQYRFEHL	10	Unmodified	_NPSQYRFEHL_					0	0	0		ENSG00000172432|ENST00000307126|GTPBP2	ENSG00000172432|ENST00000307126|GTPBP2	ENSG00000172432|ENST00000307126|GTPBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.96051025390625	3	430.879038	1289.61528	0.018993	8.1837E-06	-0.13631	-5.8734E-05	-0.11732	-5.055E-05	430.87893912774837	37.238	0.51794	37.325	37.006	37.524	0.08741					37	18	3	0	0	0	0.31043	1	7624	7624		17.572	11.338	1	291890			30901	6633	17923	17924	38035	38035					-0.017938702390893013
NPSQYRFEHL	10	Unmodified	_NPSQYRFEHL_					0	0	0		ENSG00000172432|ENST00000307126|GTPBP2	ENSG00000172432|ENST00000307126|GTPBP2	ENSG00000172432|ENST00000307126|GTPBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.9604187011719	3	430.879038	1289.61528	0.065746	2.8329E-05	0.073122	3.1507E-05	0.13887	5.9836E-05	430.87915738397294	37.233	0.67675	37.326	37.086	37.763	0.093018					48	24	3	0	0	0	0.29542	1	7640	7640		27.129	14.901	1	329970			30902	6633	17923	17924	38036	38036					-0.017938702390893013
NPTESDTLEFP	11	Unmodified	_NPTESDTLEFP_					0	0	0		ENSG00000204767|ENST00000377365|INSYN2B	ENSG00000204767|ENST00000377365|INSYN2B	ENSG00000204767|ENST00000377365|INSYN2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.8035278320312	2	625.282783	1248.55101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.456	1	94.454	93.954	94.954	-0.0020142								0	0	0	0.37252	1	25196	25196		3.2813	1.2216	1				30903	8256	17924	17925	38037	38037					-0.06332114906558672
NPTSQATLLF	10	Unmodified	_NPTSQATLLF_					0	0	0			REV__nc|ENSG00000101888|Q9NPJ8-4|NXT2	REV__nc|ENSG00000101888|Q9NPJ8-4|NXT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7675170898438	2	546.290214	1090.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.58	1	85.571	85.071	86.071	-0.0090027								0	0	0	0.36922	1	22472	22472		6.7232	0	1		+		30904	14292	17925	17926	38038	38038					0.02421421752092101
NPVGATLESA	10	Unmodified	_NPVGATLESA_					0	0	0			REV__nc|ENSG00000204305|Q15109-8|AGER	REV__nc|ENSG00000204305|Q15109-8|AGER	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.76043701171875	2	479.745639	957.476725	0.052313	2.5097E-05	1.9232	0.00092267	1.9756	0.00094776	479.7465563959917	15.797	0.31886	15.733	15.517	15.836	-0.064414					17	10	2	0	0	0	0.38773	1	1134	1134		5.7319	0.50118	1	30659	+		30905	18932	17926	17927	38039	38039					-0.0037141320741511663
NPVHELAKR	9	Unmodified	_NPVHELAKR_					0	0	0			REV__nc|ENSG00000101161|O94906-2|PRPF6	REV__nc|ENSG00000101161|O94906-2|PRPF6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.292724609375	2	532.30399	1062.59343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.065	1	31.092	30.592	31.592	0.027157								0	0	0	0.21009	1	5756	5756		19.257	5.3509	1		+		30906	14249	17927	17928	38040	38040					0.06463369802986563
NPVHNGHAL	9	Unmodified	_NPVHNGHAL_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7602233886719	2	479.746308	957.478063	-0.037587	-1.8032E-05	0.39081	0.00018749	0.35322	0.00016946	479.74649354092384	15.728	0.45066	15.728	15.557	16.008	0					23	15	2	0	0	0	0.33276	1	1107	1107		3.9444	0.66309	1	33653			30907	4198	17928	17929	38041	38041					-0.002377343280045352
NPVHNGHAL	9	Unmodified	_NPVHNGHAL_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7605895996094	2	479.746308	957.478063	0.036799	1.7654E-05	0.54218	0.00026011	0.57897	0.00027776	479.74654931355917	15.808	0.43464	15.699	15.491	15.925	-0.10981					23	14	2	0	0	0	0.33276	1	1133	1133		3.9444	1.6417	1	33711			30908	4198	17928	17929	38042	38042					-0.002377343280045352
NPVHNGHAL	9	Unmodified	_NPVHNGHAL_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	479.746308	957.478063	-0.037587	-1.8032E-05	0.39081	0.00018749	0.35322	0.00016946	479.74649354092384	15.728	0.45066	15.728	15.557	16.008	0	0.0079569	-7.3397E-05	NaN	3.9444	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33653			30909	4198	17928	17929							-0.002377343280045352
NPVHNGHAL	9	Unmodified	_NPVHNGHAL_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1;nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.746308	957.478063	0.052313	2.5097E-05	0.52937	0.00025397	0.58169	0.00027906	479.7465563959917	15.797	0.31886	15.733	15.517	15.836	-0.064414	0.013177	5.9557E-05	NaN	3.9444	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30659			30910	4198	17928	17929							-0.002377343280045352
NPVKRQHRKS	10	Unmodified	_NPVKRQHRKS_					0	0	0			REV__ENST00000590420.1_1_19:11685827-11688432:-|nuORF	REV__ENST00000590420.1_1_19:11685827-11688432:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.3651733398438	2	625.365444	1248.71634	-0.1554	-9.7181E-05	2.201	0.0013765	2.0456	0.0012793	625.3668903338062	98.199	0.37744	98.261	98.06	98.438	0.061516					80	42	3	0	0	0	0.41025	1	26285	26285		3.2813	3.2813	1	459080	+		30911	14326	17929	17930	38043	38043					0.10192626254274728
NPVKRQHRKS	10	Unmodified	_NPVKRQHRKS_					0	0	0			REV__ENST00000590420.1_1_19:11685827-11688432:-|nuORF	REV__ENST00000590420.1_1_19:11685827-11688432:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.86767578125	2	625.365444	1248.71634	0.16093	0.00010064	1.674	0.0010469	1.835	0.0011475	625.3663374710434	98.302	0.41965	98.295	98.075	98.494	-0.0068283					110	47	3	0	0	0	0.4022	1	26302	26302		5.7319	0	1	697460	+		30912	14326	17929	17930	38044	38044					0.10192626254274728
NPYDSVKKI	9	Unmodified	_NPYDSVKKI_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.293701171875	2	532.292756	1062.57096	0.54801	0.0002917	-0.20395	-0.00010856	0.34406	0.00018314	532.2930393046211	30.465	2.0025	30.465	29.551	31.553	0					264	71	7	0	0	0	2.2231E-07	5	5600	5468;5511;5561;5600;5647		171.46	121.53	1	19419000			30913	8366	17930	17931	38045;38046;38047;38048;38049	38048					0.04217725614716983
NPYDSVKKI	9	Unmodified	_NPYDSVKKI_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2935791015625	2	532.292756	1062.57096	0.40312	0.00021458	-0.06069	-3.2305E-05	0.34243	0.00018227	532.2930764900246	30.46	2.2373	30.488	29.485	31.722	0.027946					276	78	7	0	0	0	9.5135E-08	5	5611	5431;5475;5517;5568;5611		176.43	121.53	1	18520000			30914	8366	17930	17931	38050;38051;38052;38053;38054	38054					0.04217725614716983
NPYDSVKKI	9	Unmodified	_NPYDSVKKI_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2927856445312	2	532.292756	1062.57096	0.21361	0.00011371	0.12865	6.8479E-05	0.34226	0.00018218	532.2932163623891	30.473	2.2305	30.501	29.343	31.573	0.027157					262	78	7	0	0	0	2.2231E-07	6	5496	5446;5496;5540;5583;5634;5830		171.46	121.53	1	19913000			30915	8366	17930	17931	38055;38056;38057;38058;38059;38060	38056					0.04217725614716983
NPYIVRLI	8	Unmodified	_NPYIVRLI_					0	0	0		ENSG00000115085|ENST00000264972|ZAP70;nc|ENSG00000115085|P43403-3|ZAP70;ENST00000495754.1_1_2:98351695-98354405:+|nuORF;nc|ENSG00000115085|P43403-2|ZAP70;ENST00000487283.5_1_2:98351482-98355958:+|nuORF	ENSG00000115085|ENST00000264972|ZAP70	ENSG00000115085|ENST00000264972|ZAP70	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.77691650390625	2	494.302927	986.591301	0.47986	0.00023719	-0.10431	-5.1559E-05	0.37555	0.00018564	494.3028586742692	60.428	0.53613	60.428	60.202	60.738	0					43	19	3	0	0	0	0.14491	1	14803	14803		52.268	25.385	1	1426800			30916	2605	17931	17932	38061	38061					0.09746941065179726
NPYIVRLI	8	Unmodified	_NPYIVRLI_					0	0	0		ENSG00000115085|ENST00000264972|ZAP70;nc|ENSG00000115085|P43403-3|ZAP70;ENST00000495754.1_1_2:98351695-98354405:+|nuORF;nc|ENSG00000115085|P43403-2|ZAP70;ENST00000487283.5_1_2:98351482-98355958:+|nuORF	ENSG00000115085|ENST00000264972|ZAP70	ENSG00000115085|ENST00000264972|ZAP70	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7768249511719	2	494.302927	986.591301	0.35903	0.00017747	-0.026048	-1.2875E-05	0.33298	0.00016459	494.30292461238184	60.374	0.61864	60.469	60.131	60.75	0.095093					51	22	3	0	0	0	0.059769	1	14764	14764		49.933	34.086	1	1363600			30917	2605	17931	17932	38062	38062					0.09746941065179726
NPYIVRLI	8	Unmodified	_NPYIVRLI_					0	0	0		ENSG00000115085|ENST00000264972|ZAP70;nc|ENSG00000115085|P43403-3|ZAP70;ENST00000495754.1_1_2:98351695-98354405:+|nuORF;nc|ENSG00000115085|P43403-2|ZAP70;ENST00000487283.5_1_2:98351482-98355958:+|nuORF	ENSG00000115085|ENST00000264972|ZAP70	ENSG00000115085|ENST00000264972|ZAP70	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7767333984375	2	494.302927	986.591301	0.54229	0.00026806	-0.15698	-7.7598E-05	0.38531	0.00019046	494.30281615662506	60.531	0.53763	60.522	60.17	60.708	-0.0094566					36	19	2	0	0	0	0.14491	1	14790	14790		52.268	30.522	1	1250100			30918	2605	17931	17932	38063	38063					0.09746941065179726
NPYIVRMI	8	Oxidation (M)	_NPYIVRM(Oxidation (M))I_		NPYIVRM(1)I		NPYIVRM(100)I	0	0	1		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2781982421875	2	511.278595	1020.54264	0.42124	0.00021537	-0.17587	-8.9921E-05	0.24537	0.00012545	511.27839933219354	43.122	0.92688	43.2	42.914	43.841	0.077515					57	31	2	0	0	0	0.021231	2	9439	9439;9488		100.37	68.255	1	2324200			30919	5916	17932	17933	38064;38065	38064		699			0.03318704433786479
NPYIVRMI	8	Oxidation (M)	_NPYIVRM(Oxidation (M))I_		NPYIVRM(1)I		NPYIVRM(110)I	0	0	1		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2784423828125	2	511.278595	1020.54264	0.17675	9.037E-05	-0.075729	-3.8719E-05	0.10102	5.1651E-05	511.2784084016961	43.096	0.91962	43.18	42.896	43.815	0.083996					61	33	2	0	0	0	0.012639	1	9451	9451		112.59	80.288	1	2229300			30920	5916	17932	17933	38066	38066		699			0.03318704433786479
NPYLLALTI	9	Unmodified	_NPYLLALTI_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3027038574219	2	509.302593	1016.59063	0.47792	0.00024341	0.030602	1.5586E-05	0.50852	0.00025899	509.30253567840475	87.657	1.1252	87.657	87.239	88.364	0					148	55	4	0	0	0	0.006189	2	23144	23144;23194		85.272	23.915	1	642520			30921	1924	17933	17934	38067;38068	38067					0.08300101625468415
NPYLLALTI	9	Unmodified	_NPYLLALTI_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.302734375	2	509.302593	1016.59063	0.34125	0.0001738	0.047091	2.3984E-05	0.38834	0.00019779	509.30254491948915	87.532	1.102	87.619	87.142	88.244	0.087097					149	57	3	0	0	0	0.012929	1	23102	23102		74.929	22.661	1	956080			30922	1924	17933	17934	38069	38069					0.08300101625468415
NPYLLALTI	9	Unmodified	_NPYLLALTI_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.302978515625	2	509.302593	1016.59063	0.36606	0.00018644	0.13014	6.6282E-05	0.49621	0.00025272	509.3025953256799	87.665	0.98015	87.659	87.304	88.285	-0.0056229					134	52	3	0	0	0	0.12743	1	23090	23090		46.021	6.0636	1	712960			30923	1924	17933	17934	38070	38070					0.08300101625468415
NPYLSVKQK	9	Unmodified	_NPYLSVKQK_					0	0	0		ENST00000498078.1_1_13:41303510-41323454:-|nuORF;ENSG00000102738|ENST00000323563|MRPS31	ENST00000498078.1_1_13:41303510-41323454:-|nuORF	ENST00000498078.1_1_13:41303510-41323454:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.82080078125	2	538.808574	1075.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.341	1	63.436	62.936	63.936	0.095722								0	0	0	0.18053	1	15675	15675		27.629	0	1				30924	1776	17934	17935	38071	38071					0.06781718368665679
NPYNGGGRV	9	Unmodified	_NPYNGGGRV_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.F753Sfs*5|1|0.07|ENSG00000173193|chr3:122700811-122700812|-/C|frameshift_variant;PARP14|p.P265Lfs*7|1|0.33|ENSG00000173193|chr3:122695616-122695616|T/-|frameshift_variant	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.78955078125	2	467.230491	932.446428	-0.052729	-2.4637E-05	-0.27265	-0.00012739	-0.32538	-0.00015203	467.2303639149044	19.94	0.33212	19.94	19.713	20.045	0					17	11	2	0	0	0	0.25988	1	2348	2348		3.9444	1.0552	1	77816			30925	6700	17935	17936	38072	38072					-0.022497270819371806
NPYNGGGRV	9	Unmodified	_NPYNGGGRV_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.F753Sfs*5|1|0.07|ENSG00000173193|chr3:122700811-122700812|-/C|frameshift_variant;PARP14|p.P265Lfs*7|1|0.33|ENSG00000173193|chr3:122695616-122695616|T/-|frameshift_variant	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7895812988281	2	467.230491	932.446428	0.15697	7.3342E-05	-0.48396	-0.00022612	-0.32699	-0.00015278	467.2302426796153	20.134	0.34018	20.019	19.786	20.126	-0.11592					21	11	2	0	0	0	0.25706	1	2408	2408		6.7232	2.3939	1	70409			30926	6700	17935	17936	38073	38073					-0.022497270819371806
NPYNGGGRV	9	Unmodified	_NPYNGGGRV_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;PARP14|p.F753Sfs*5|1|0.07|ENSG00000173193|chr3:122700811-122700812|-/C|frameshift_variant;PARP14|p.P265Lfs*7|1|0.33|ENSG00000173193|chr3:122695616-122695616|T/-|frameshift_variant	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7895202636719	2	467.230491	932.446428	0.39545	0.00018476	-0.78138	-0.00036508	-0.38593	-0.00018032	467.2300997339828	19.962	0.38528	19.906	19.705	20.09	-0.055693					22	13	2	0	0	0	0.24848	1	2389	2389		13.906	3.7227	1	65863			30927	6700	17935	17936	38074	38074					-0.022497270819371806
NPYPDRLT	8	Unmodified	_NPYPDRLT_					0	0	0			REV__ENST00000355040.8_1_11:64001470-64001653:+|nuORF	REV__ENST00000355040.8_1_11:64001470-64001653:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2493896484375	2	488.248349	974.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.74	1	79.711	79.211	80.211	-0.028931								0	0	0	0.36748	1	20676	20676		6.7232	0.96273	1		+		30928	20181	17936	17937	38075	38075					-0.0061168962496367385
NPYSRLMAL	9	Oxidation (M)	_NPYSRLM(Oxidation (M))AL_		NPYSRLM(1)AL		NPYSRLM(65)AL	0	0	1		ENST00000464101.2_1_3:132379321-132384968:+|nuORF;UBA5|p.E241Dfs*2|1|0.24|ENSG00000081307|chr3:132672084-132672085|-/TGAT|frameshift_variant;ENSG00000081307|ENST00000356232|UBA5	ENST00000464101.2_1_3:132379321-132384968:+|nuORF	ENST00000464101.2_1_3:132379321-132384968:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3232421875	2	540.778959	1079.54336	0.29469	0.00015936	-0.14104	-7.627E-05	0.15365	8.3091E-05	540.7788335374474	46.489	0.78554	46.489	46.003	46.789	0					69	28	3	0	0	0	0.052436	1	10441	10441		65.474	40.483	1	1207000			30929	1181	17937	17938	38076	38076		140			0.006774990828262162
NPYSRLMAL	9	Oxidation (M)	_NPYSRLM(Oxidation (M))AL_		NPYSRLM(1)AL		NPYSRLM(100)AL	0	0	1		ENST00000464101.2_1_3:132379321-132384968:+|nuORF;UBA5|p.E241Dfs*2|1|0.24|ENSG00000081307|chr3:132672084-132672085|-/TGAT|frameshift_variant;ENSG00000081307|ENST00000356232|UBA5	ENST00000464101.2_1_3:132379321-132384968:+|nuORF	ENST00000464101.2_1_3:132379321-132384968:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.322998046875	2	540.778959	1079.54336	0.35876	0.00019401	-0.38993	-0.00021086	-0.031162	-1.6852E-05	540.7787611042181	46.224	0.78592	46.283	45.9	46.686	0.059834					69	28	3	0	0	0	0.0056456	1	10392	10392		103.42	43.346	1	1815900			30930	1181	17937	17938	38077	38077		140			0.006774990828262162
NPYSRLMAL	9	Oxidation (M)	_NPYSRLM(Oxidation (M))AL_		NPYSRLM(1)AL		NPYSRLM(100)AL	0	0	1		ENST00000464101.2_1_3:132379321-132384968:+|nuORF;UBA5|p.E241Dfs*2|1|0.24|ENSG00000081307|chr3:132672084-132672085|-/TGAT|frameshift_variant;ENSG00000081307|ENST00000356232|UBA5	ENST00000464101.2_1_3:132379321-132384968:+|nuORF	ENST00000464101.2_1_3:132379321-132384968:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.322509765625	2	540.778959	1079.54336	0.47519	0.00025697	-0.3909	-0.00021139	0.084288	4.5581E-05	540.7787223816156	46.217	0.96592	46.282	45.872	46.838	0.065048					76	34	3	0	0	0	0.0056456	1	10393	10393		103.42	43.346	1	1486100			30931	1181	17937	17938	38078	38078		140			0.006774990828262162
NPYTKTIFV	9	Unmodified	_NPYTKTIFV_					0	0	0			REV__ENSG00000112796|ENST00000371383|ENPP5	REV__ENSG00000112796|ENST00000371383|ENPP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.322998046875	2	541.797675	1081.5808	0.37992	0.00020584	2.485	0.0013464	2.8649	0.0015522	541.7991193233643	46.236	0.097324	46.296	46.236	46.333	0.059834					5	3	2	0	0	0	0.23784	1	10392	10392		19.257	2.3147	1	195000	+		30932	14788	17938	17939	38079	38079					0.043269136200933644
NPYTKTIFV	9	Unmodified	_NPYTKTIFV_					0	0	0			REV__ENSG00000112796|ENST00000371383|ENPP5	REV__ENSG00000112796|ENST00000371383|ENPP5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.797675	1081.5808	0.2655	0.00014385	3.7637	0.0020391	4.0292	0.002183	542.3014989358186	46.471	0.11009	46.471	46.43	46.54	0	0.0873	0.00091447	NaN	25.399	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99956	+		30933	14788	17938	17939							0.043269136200933644
NPYTLFVL	8	Unmodified	_NPYTLFVL_					0	0	0		ENSG00000141449|ENST00000424526|GREB1L;nc|ENSG00000141449|Q9C091-3|GREB1L	ENSG00000141449|ENST00000424526|GREB1L	ENSG00000141449|ENST00000424526|GREB1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7603759765625	2	483.768386	965.522219	0.26797	0.00012964	2.2935	0.0011095	2.5615	0.0012392	483.7684534823878	73.562	0.34647	73.532	73.29	73.637	-0.030144					14	12	2	0	0	0	0.27124	1	18819	18819		34.102	7.7612	1	79356			30934	4380	17939	17940	38080	38080					0.03807857045626406
NQAFIGIFQ	9	Unmodified	_NQAFIGIFQ_					0	0	0			REV__nc|ENSG00000151726|P33121-2|ACSL1	REV__nc|ENSG00000151726|P33121-2|ACSL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3327026367188	2	519.274367	1036.53418	0.48323	0.00025093	-2.6149	-0.0013579	-2.1317	-0.0011069	519.772887622309	36.455	0.19145	36.537	36.43	36.621	0.082359					9	6	2	0	0	0	0.25988	1	7429	7429		3.9444	2.2918	1	87267	+		30935	16555	17940	17941	38081	38081					0.017374737888076197
NQAWLLLKLL	10	Unmodified	_NQAWLLLKLL_					0	0	0			REV__GID8|p.K212Ifs*4|1|0.3|ENSG00000101193|chr20:62944859-62944862|AAAT/-|frameshift_variant	REV__GID8|p.K212Ifs*4|1|0.3|ENSG00000101193|chr20:62944859-62944862|AAAT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.49700927734375	3	404.588536	1210.74378	-0.049505	-2.0029E-05	0.78586	0.00031795	0.73635	0.00029792	404.58908657940924	35.647	0.98291	35.73	35.325	36.308	0.082355					79	35	3	0	0	0	0.32082	1	7289	7289		1.5923	0	1	292360	+		30936	14254	17941	17942	38082	38082					0.14683716741933495
NQEIRAHIL	9	Unmodified	_NQEIRAHIL_					0	0	0			REV__nc|ENSG00000095596|O43174-2|CYP26A1	REV__nc|ENSG00000095596|O43174-2|CYP26A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.3165893554688	2	547.309272	1092.60399	0.65857	0.00036044	1.1624	0.0006362	1.821	0.00099664	547.3097232001534	65.838	1.1167	65.826	65.319	66.436	-0.011337					73	40	3	0	0	0	0.24913	1	16281	16281		12.532	0	1	1216200	+		30937	14105	17942	17943	38083	38083					0.0613935245742141
NQEKGQKGKN	10	Unmodified	_NQEKGQKGKN_					0	0	0			REV__ENSG00000164830|ENST00000517566|OXR1	REV__ENSG00000164830|ENST00000517566|OXR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.799072265625	2	565.799269	1129.58398	-0.029111	-1.6471E-05	0.28871	0.00016335	0.2596	0.00014688	565.7993715801165	15.16	1.0159	15.096	14.82	15.836	-0.064414					69	34	4	0	0	0	0.41242	1	1053	1053		1.1933	0	1	708200	+		30938	17180	17943	17944	38084	38084					0.02437556726818002
NQEKHFYTF	9	Unmodified	_NQEKHFYTF_					0	0	0		ENSG00000083520|ENST00000377767|DIS3	ENSG00000083520|ENST00000377767|DIS3	ENSG00000083520|ENST00000377767|DIS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.54388427734375	3	405.192734	1212.55637	0.019594	7.9395E-06	0.30035	0.0001217	0.31995	0.00012964	405.1928438605493	36.188	0.60432	36.188	35.907	36.511	0					51	21	4	0	0	0	0.25689	1	7265	7265		2.2828	0	1	278300			30939	1222	17944	17945	38085	38085					-0.041403465334497014
NQEKHFYTF	9	Unmodified	_NQEKHFYTF_					0	0	0		ENSG00000083520|ENST00000377767|DIS3	ENSG00000083520|ENST00000377767|DIS3	ENSG00000083520|ENST00000377767|DIS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.49700927734375	3	405.192734	1212.55637	0.030587	1.2393E-05	0.54443	0.0002206	0.57502	0.00023299	405.1928576325244	36.068	0.5862	36.151	35.9	36.486	0.082355					38	20	3	0	0	0	0.25689	1	7289	7289		4.5289	1.6856	1	362590			30940	1222	17944	17945	38086	38086					-0.041403465334497014
NQFLIFILFL	10	Unmodified	_NQFLIFILFL_					0	0	0			REV__ENST00000530087.1_1_11:479107-480172:+|nuORF	REV__ENST00000530087.1_1_11:479107-480172:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3763427734375	2	634.376092	1266.73763	0.45981	0.00029169	1.7754	0.0011263	2.2352	0.001418	634.3778945399409	112.94	0.71867	112.95	112.58	113.3	0.014824					129	86	2	0	0	0	0.41642	1	29356	29356		0.45834	0	1	59766	+		30941	22007	17945	17946	38087	38087					0.1149319851040218
NQGMWSPPP	9	Unmodified	_NQGMWSPPP_					0	0	0			REV__ENSG00000283297|ENST00000637658|TEX52	REV__ENSG00000283297|ENST00000637658|TEX52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.910888671875	2	507.229102	1012.44365	0.097713	4.9563E-05	-3.3951	-0.0017221	-3.2974	-0.0016725	507.2273332748172	17.995	0.26481	17.877	17.663	17.928	-0.11739					13	8	3	0	0	0	0.25417	1	1812	1812		8.5933	0.68312	1	20431	+		30942	19365	17946	17947	38088	38088					-0.06207318531130568
NQIFENFKHLN	11	Unmodified	_NQIFENFKHLN_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.57415771484375	3	468.573726	1402.69935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.258	1	20.205	19.705	20.705	-0.05291								0	0	0	0.366	1	2481	2481		4.7159	0.30977	1		+		30943	13950	17947	17948	38089	38089					0.014106608578231317
NQIGKHYKK	9	Unmodified	_NQIGKHYKK_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3193969726562	2	558.31964	1114.62473	-0.054196	-3.0259E-05	0.29607	0.0001653	0.24188	0.00013505	558.3197363682976	12.203	0.13773	12.203	12.135	12.273	0					11	5	3	0	0	0	0.34681	1	64	64		1.8442	0.6509	1	35288			30944	8114	17948	17949	38090	38090					0.07199942837087292
NQIGKHYKK	9	Unmodified	_NQIGKHYKK_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	558.31964	1114.62473	0.065579	3.6614E-05	-0.42389	-0.00023667	-0.35831	-0.00020005	558.3191401873532	12.204	0.12423	12.107	12.053	12.178	-0.096607	-0.046898	-0.00041918	NaN	1.8442	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26708			30945	8114	17948	17949							0.07199942837087292
NQIGKHYKK	9	Unmodified	_NQIGKHYKK_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	558.31964	1114.62473	-0.18592	-0.0001038	-0.22424	-0.0001252	-0.41016	-0.000229	558.31950623045	12.22	0.14277	12.152	12.083	12.226	-0.06806	-0.0021313	-0.00019624	NaN	1.8442	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30529			30946	8114	17948	17949							0.07199942837087292
NQKCKSQSFK	10	Unmodified	_NQKCKSQSFK_					0	0	0		ENST00000477950.1_1_7:881559-883270:+|nuORF;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1	ENST00000477950.1_1_7:881559-883270:+|nuORF	ENST00000477950.1_1_7:881559-883270:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.3062133789062	2	599.305872	1196.59719	0.65461	0.00039231	0.11638	6.9746E-05	0.77099	0.00046206	599.3058935726651	53.581	0.66733	53.581	53.358	54.026	0					52	24	3	0	0	0	0.21126	1	12688	12688		31.268	0	1	1075700			30947	10964	17949	17950	38091	38091					0.0067567151454568375
NQKCKSQSFK	10	Unmodified	_NQKCKSQSFK_					0	0	0		ENST00000477950.1_1_7:881559-883270:+|nuORF;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1	ENST00000477950.1_1_7:881559-883270:+|nuORF	ENST00000477950.1_1_7:881559-883270:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.3062133789062	2	599.305872	1196.59719	0.41648	0.0002496	0.35526	0.00021291	0.77174	0.00046251	599.306160037858	53.526	0.62774	53.583	53.325	53.953	0.056259					56	23	3	0	0	0	0.15473	1	12665	12665		38.176	6.9072	1	1123900			30948	10964	17949	17950	38092	38092					0.0067567151454568375
NQKCKSQSFK	10	Unmodified	_NQKCKSQSFK_					0	0	0		ENST00000477950.1_1_7:881559-883270:+|nuORF;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1	ENST00000477950.1_1_7:881559-883270:+|nuORF	ENST00000477950.1_1_7:881559-883270:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	599.305872	1196.59719	0.65461	0.00039231	0.11638	6.9746E-05	0.77099	0.00046206	599.3058935726651	53.581	0.66733	53.581	53.358	54.026	0	-0.083727	-7.1813E-05	NaN	38.176	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1075700			30949	10964	17949	17950							0.0067567151454568375
NQKCKSQSFK	10	Unmodified	_NQKCKSQSFK_					0	0	0		ENST00000477950.1_1_7:881559-883270:+|nuORF;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1	ENST00000477950.1_1_7:881559-883270:+|nuORF	ENST00000477950.1_1_7:881559-883270:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	599.305872	1196.59719	0.41648	0.0002496	0.35526	0.00021291	0.77174	0.00046251	599.306160037858	53.526	0.62774	53.583	53.325	53.953	0.056259	-0.08196	0.00021451	NaN	38.176	56	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1123900			30950	10964	17949	17950							0.0067567151454568375
NQKCKSQSFK	10	Unmodified	_NQKCKSQSFK_					0	0	0		ENST00000477950.1_1_7:881559-883270:+|nuORF;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1	ENST00000477950.1_1_7:881559-883270:+|nuORF	ENST00000477950.1_1_7:881559-883270:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	599.305872	1196.59719	0.50411	0.00030211	0.078543	4.7071E-05	0.58265	0.00034918	599.3060675275086	53.84	0.64684	53.83	53.611	54.258	-0.0096054	0.16569	-0.00011716	NaN	38.176	60	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1076200			30951	10964	17949	17950							0.0067567151454568375
NQKEYENKKA	10	Unmodified	_NQKEYENKKA_					0	0	0		ENSG00000164902|ENST00000297540|PHAX	ENSG00000164902|ENST00000297540|PHAX	ENSG00000164902|ENST00000297540|PHAX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.200439453125	3	417.882448	1250.62551	-0.13059	-5.4573E-05	4.2659	0.0017827	4.1353	0.0017281	418.21852819032273	26.673	0.26014	26.673	26.499	26.759	0					13	8	2	0	0	0	0.32034	1	4449	4449		4.7159	0.59929	1	41912			30952	5895	17950	17951	38093	38093					0.010226926954601367
NQKGMLIL	8	Unmodified	_NQKGMLIL_					0	0	0			REV__nc|ENSG00000137492|O43422-2|THAP12	REV__nc|ENSG00000137492|O43422-2|THAP12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.57025146484375	2	458.767863	915.521173	0.48431	0.00022218	-1.908	-0.00087534	-1.4237	-0.00065316	458.7678114292075	47.76	0.71225	47.803	47.244	47.957	0.04332					64	26	4	0	0	0	0.31934	1	10819	10819		24.674	0	1	675910	+		30953	15864	17951	17952	38094	38094					0.060033194050674865
NQLISEMERF	10	Unmodified	_NQLISEMERF_					0	0	0			REV__ENST00000475928.1_1_2:175275226-175292620:+|nuORF	REV__ENST00000475928.1_1_2:175275226-175292620:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.59259033203125	3	422.876417	1265.60742	0.10718	4.5324E-05	0.50375	0.00021302	0.61093	0.00025835	423.2111175491625	44.204	0.77551	44.272	44.119	44.894	0.068569					54	28	3	0	0	0	0.31911	1	9884	9884		3.8763	0	1	261310	+		30954	16227	17952	17953	38095	38095					-0.014757655509129108
NQLMWFLF	8	Unmodified	_NQLMWFLF_					0	0	0		nc|ENSG00000069431|O60706|ABCC9;ENSG00000069431|ENST00000261200|ABCC9	nc|ENSG00000069431|O60706|ABCC9	nc|ENSG00000069431|O60706|ABCC9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7404174804688	2	549.775688	1097.53682	0.36983	0.00020333	1.9412	0.0010672	2.311	0.0012706	550.2788095068377	59.01	0.3768	59.01	58.864	59.241	0					20	13	2	0	0	0	0.29855	1	14385	14385		32.117	8.0964	1	208470			30955	906	17953	17954	38096	38096					-0.008043940779089098
NQLMWFLF	8	Unmodified	_NQLMWFLF_					0	0	0		nc|ENSG00000069431|O60706|ABCC9;ENSG00000069431|ENST00000261200|ABCC9	nc|ENSG00000069431|O60706|ABCC9	nc|ENSG00000069431|O60706|ABCC9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7406616210938	2	549.775688	1097.53682	0.51608	0.00028373	2.7714	0.0015237	3.2875	0.0018074	549.7760147763021	58.794	0.33739	58.886	58.74	59.077	0.091301					27	11	3	0	0	0	0.33245	1	14320	14320		19.439	5.5329	1	188880			30956	906	17953	17954	38097	38097					-0.008043940779089098
NQLPRPVGF	9	Unmodified	_NQLPRPVGF_					0	0	0		ENSG00000198440|ENST00000333201|ZNF583	ENSG00000198440|ENST00000333201|ZNF583	ENSG00000198440|ENST00000333201|ZNF583	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8090209960938	2	514.287808	1026.56106	0.40927	0.00021048	0.63523	0.00032669	1.0445	0.00053717	514.288123772742	45.708	0.42321	45.773	45.647	46.07	0.065048					25	14	3	0	0	0	0.24913	1	10314	10314		7.9102	0	1	513180			30957	8076	17954	17955	38098	38098					0.048845823999727145
NQNKCFFWF	9	Unmodified	_NQNKCFFWF_					0	0	0			REV__ENST00000568684.1_1_16:69958981-69959194:+|nuORF	REV__ENST00000568684.1_1_16:69958981-69959194:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2187194824219	3	411.855176	1232.5437	-0.23979	-9.876E-05	-2.197	-0.00090484	-2.4368	-0.0010036	411.85467399213854	28.046	0.085541	28.046	27.992	28.078	0.0004673					4	2	2	0	0	0	0.25949	1	4846	4846		4.897	1.0207	1	23513	+		30958	22398	17955	17956	38099	38099					-0.06327081197332518
NQRHHQKRMKY	11	Unmodified	_NQRHHQKRMKY_					0	0	0			REV__ENSG00000148948|ENST00000528697|LRRC4C	REV__ENSG00000148948|ENST00000528697|LRRC4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8057861328125	3	509.268754	1524.78443	-0.49357	-0.00025136	0.080104	4.0795E-05	-0.41346	-0.00021056	509.268965366432	35.145	1.1568	35.145	34.805	35.962	0					142	41	5	0	0	0	0.32563	1	6978	6978		17.049	17.049	1	3678700	+		30959	16445	17956	17957	38100	38100					0.04303127842604226
NQRHHQKRMKY	11	Unmodified	_NQRHHQKRMKY_					0	0	0			REV__ENSG00000148948|ENST00000528697|LRRC4C	REV__ENSG00000148948|ENST00000528697|LRRC4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8056335449219	3	509.268754	1524.78443	-0.56062	-0.00028551	0.13337	6.7924E-05	-0.42725	-0.00021758	509.2689799049495	35.11	1.1575	35.185	34.843	36.001	0.075302					134	41	5	0	0	0	0.3299	1	6942	6942		9.7643	7.133	1	3917600	+		30960	16445	17956	17957	38101	38101					0.04303127842604226
NQRHHQKRMKY	11	Unmodified	_NQRHHQKRMKY_					0	0	0			REV__ENSG00000148948|ENST00000528697|LRRC4C	REV__ENSG00000148948|ENST00000528697|LRRC4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8058776855469	3	509.268754	1524.78443	-0.66525	-0.00033879	0.36375	0.00018524	-0.30151	-0.00015355	509.26910410618774	35.076	1.2202	35.153	34.78	36	0.077377					133	43	5	0	0	0	0.32563	1	6955	6955		17.049	12.932	1	3845000	+		30961	16445	17956	17957	38102	38102					0.04303127842604226
NQRQRFSGVF	10	Unmodified	_NQRQRFSGVF_					0	0	0			REV__ENSG00000170255|ENST00000526914|MRGPRX1	REV__ENSG00000170255|ENST00000526914|MRGPRX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5499572753906	3	413.551144	1237.6316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.26	1	20.15	19.65	20.65	-0.11003								0	0	0	0.38126	1	2485	2485		0.69767	0.07084	1		+		30962	17568	17957	17958	38103	38103					0.02229255717656997
NQRRRRPLRRR	11	Unmodified	_NQRRRRPLRRR_					0	0	0		nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;ENST00000503648.1_1_16:1451355-1464692:-|nuORF;nc|ENSG00000059145|Q9H9P5-5|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5|UNKL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2799072265625	3	521.992835	1562.95667	0.68055	0.00035524	-3.3315	-0.001739	-2.6509	-0.0013838	521.9914491382717	50.826	0.19131	50.873	50.794	50.985	0.046577					9	6	2	0	0	0	0.33352	1	11811	11811		0	0	1	205610			30963	740;12576	17958	17959	38104	38104					0.1977146036499562
NQRVEELQ	8	Unmodified	_NQRVEELQ_					0	0	0			REV__ENSG00000023892|ENST00000316637|DEF6	REV__ENSG00000023892|ENST00000316637|DEF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2806396484375	2	508.261988	1014.50942	0.28855	0.00014666	3.175	0.0016137	3.4636	0.0017604	508.26270107578426	21.809	0.39336	21.809	21.573	21.966	0					20	14	2	0	0	0	0.42371	1	2980	2980		14.838	1.3304	1	44597	+		30964	13474	17959	17960	38105	38105					0.002747939154346568
NQRVEELQ	8	Unmodified	_NQRVEELQ_					0	0	0			REV__ENSG00000023892|ENST00000316637|DEF6	REV__ENSG00000023892|ENST00000316637|DEF6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.261988	1014.50942	0.19707	0.00010016	1.8906	0.00096093	2.0877	0.0010611	508.26262480411816	21.876	0.23732	21.827	21.689	21.926	-0.049377	0.0088666	-0.00052667	NaN	14.838	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59822	+		30965	13474	17959	17960							0.002747939154346568
NQTLLYNLF	9	Unmodified	_NQTLLYNLF_					0	0	0		nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENSG00000115947|ENST00000392857|ORC4;ENST00000483608.1_1_2:148705613-148710070:-|nuORF;ENST00000496670.6_1_2:148709144-148730385:-|nuORF	nc|ENSG00000115947|O43929-2|ORC4	nc|ENSG00000115947|O43929-2|ORC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.7819213867188	2	563.300581	1124.58661	0.59784	0.00033676	-0.7637	-0.00043019	-0.16586	-9.3431E-05	563.3005201709368	84.846	0.64067	84.927	84.541	85.182	0.080879					47	24	3	0	0	0	0.21026	1	22250	22250		28.495	9.0555	1	223900			30966	2690	17960	17961	38106	38106					0.029300121317419325
NQTLLYNLF	9	Unmodified	_NQTLLYNLF_					0	0	0		nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENSG00000115947|ENST00000392857|ORC4;ENST00000483608.1_1_2:148705613-148710070:-|nuORF;ENST00000496670.6_1_2:148709144-148730385:-|nuORF	nc|ENSG00000115947|O43929-2|ORC4	nc|ENSG00000115947|O43929-2|ORC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7820434570312	2	563.300581	1124.58661	0.47582	0.00026803	-0.26055	-0.00014677	0.21526	0.00012126	563.300327661562	84.949	0.35185	84.937	84.71	85.062	-0.01284					26	14	2	0	0	0	0.21026	1	22274	22274		28.495	6.9575	1	168870			30967	2690	17960	17961	38107	38107					0.029300121317419325
NQTRPAVV	8	Unmodified	_NQTRPAVV_					0	0	0			REV__ENSG00000135835|ENST00000367588|KIAA1614	REV__ENSG00000135835|ENST00000367588|KIAA1614	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7510986328125	2	442.751059	883.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.648	1	19.592	19.092	20.092	-0.055693								0	0	0	0.34957	1	2296	2296		14.838	1.3304	1		+		30968	15766	17961	17962	38108	38108					0.0411603395750717
NQTVLNRADAL	11	Unmodified	_NQTVLNRADAL_					0	0	0		nc|ENSG00000176842|P78411-3|IRX5;ENST00000558597.1_2_16:54966274-54967782:+|nuORF;nc|ENSG00000176842|P78411-2|IRX5;ENSG00000176842|ENST00000394636|IRX5	nc|ENSG00000176842|P78411-3|IRX5	nc|ENSG00000176842|P78411-3|IRX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.329833984375	2	607.828026	1213.6415	0.41791	0.00025401	0.60818	0.00036967	1.0261	0.00062368	607.8283727415327	32.854	0.48275	32.854	32.72	33.202	0					31	16	3	0	0	0	0.28258	1	6322	6322		23.79	1.0148	1	257590			30969	6945	17962	17963	38109	38109					0.0432239893239057
NQVLNYVQI	9	Unmodified	_NQVLNYVQI_					0	0	0		ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.7971801757812	2	545.798206	1089.58186	0.14044	7.6653E-05	-0.82294	-0.00044916	-0.68249	-0.0003725	545.7975567729303	12.613	0.17588	12.545	12.434	12.61	-0.067496					12	5	3	0	0	0	0.25938	1	189	189		1.8442	0.19162	1	60043			30970	3920	17963	17964	38110	38110					0.04065127988997119
NQWYEDLI	8	Unmodified	_NQWYEDLI_					0	0	0			REV__ENSG00000119203|ENST00000238112|CPSF3	REV__ENSG00000119203|ENST00000238112|CPSF3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7718505859375	2	540.753464	1079.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.719	1	72.719	72.219	73.219	0								0	0	0	0.33122	1	18551	18551		23.148	5.0134	1		+		30971	15033	17964	17965	38111	38111					-0.044191266903681026
NQWYEDLI	8	Unmodified	_NQWYEDLI_					0	0	0			REV__ENSG00000119203|ENST00000238112|CPSF3	REV__ENSG00000119203|ENST00000238112|CPSF3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7720336914062	2	540.753464	1079.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.768	1	72.768	72.268	73.268	0								0	0	0	0.35251	1	18566	18566		13.508	1.2672	1		+		30972	15033	17964	17965	38112	38112					-0.044191266903681026
NQYELWNL	8	Unmodified	_NQYELWNL_					0	0	0			REV__nc|ENSG00000198947|P11532-4|DMD	REV__nc|ENSG00000198947|P11532-4|DMD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7877807617188	2	540.261456	1078.50836	0.719	0.00038845	-0.64833	-0.00035027	0.070674	3.8183E-05	540.2623325209898	53.074	0.51522	53.13	52.942	53.457	0.056259					42	18	3	0	0	0	0.32099	1	12469	12469		19.257	2.3147	1	580100	+		30973	18899	17965	17966	38113	38113					-0.027754204534858218
NRAIQLKPK	9	Unmodified	_NRAIQLKPK_					0	0	0		ENSG00000176896|ENST00000696128|TCEANC;nc|ENSG00000176896|Q8N8B7-2|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	ENSG00000176896|ENST00000696128|TCEANC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.822509765625	2	534.337833	1066.66111	0.45242	0.00024174	-0.46831	-0.00025023	-0.01589	-8.4907E-06	534.3376363145696	20.166	0.39713	20.05	19.812	20.209	-0.11592					21	13	2	0	0	0	0.26257	1	2401	2401		0.52476	0	1	84897			30974	6948	17966	17967	38114	38114					0.13044819733772783
NRALRAEL	8	Unmodified	_NRALRAEL_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2876892089844	2	471.777608	941.540663	-0.21588	-0.00010185	0.094702	4.4678E-05	-0.12118	-5.717E-05	471.7776068102274	12.394	0.12407	12.326	12.253	12.377	-0.06806					5	3	2	0	0	0	0.45307	1	96	96		4.756	0.42677	1	18716			30975	1970	17967	17968	38115	38115					0.06755411740175532
NRCPRKNQR	9	Unmodified	_NRCPRKNQR_					0	0	0			REV__ENST00000361689.6_1_1:39792969-39815207:+|nuORF	REV__ENST00000361689.6_1_1:39792969-39815207:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.81396484375	2	586.314897	1170.61524	-0.042284	-2.4792E-05	-0.39095	-0.00022922	-0.43324	-0.00025401	586.3143943886176	98.783	0.29945	98.783	98.59	98.889	0					52	34	2	0	0	0	0.25938	1	26447	26447		1.8442	0.51471	1	108360	+		30976	20285	17968	17969	38116	38116					0.03675851279899689
NRDVRQYVQG	10	Unmodified	_NRDVRQYVQG_					0	0	0		ENSG00000090382|ENST00000261267|LYZ	ENSG00000090382|ENST00000261267|LYZ	ENSG00000090382|ENST00000261267|LYZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	617.8170166015625	2	617.817993	1233.62143	0.27398	0.00016927	-1.3439	-0.00083026	-1.0699	-0.00066099	617.8170716401527	21.504	0.67206	21.404	21.16	21.832	-0.10034					42	23	3	0	0	0	0.40262	1	2875	2875		2.9952	0.49676	1	131930			30977	1375	17969	17970	38117	38117					0.01396647992396538
NRELQFITRL	10	Unmodified	_NRELQFITRL_					0	0	0			REV__ENST00000462715.1_1_1:36602709-36602835:-|nuORF	REV__ENST00000462715.1_1_1:36602709-36602835:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	644.8034057617188	2	645.369861	1288.72517	0.94183	0.00060783	-0.4228	-0.00027286	0.51903	0.00033497	645.3693275937765	47.366	0.47684	47.42	47.225	47.702	0.054375					32	17	3	0	0	0	0.31838	1	10737	10737		7.609	3.4194	1	339620	+		30978	21235	17970	17971	38118	38118					0.09235555100076454
NREQILIGL	9	Unmodified	_NREQILIGL_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8146362304688	2	528.314023	1054.61349	0.20687	0.00010929	0.066512	3.5139E-05	0.27339	0.00014443	528.8138983692609	118.74	1.8195	118.72	118.15	119.97	-0.024147					433	229	2	0	0	0	0.34681	1	30624	30624		1.8442	0	1	25102			30979	3803	17971	17972	38119	38119					0.08837120742964544
NRETLPFF	8	Unmodified	_NRETLPFF_					0	0	0			REV__nc|ENSG00000100979|P55058-3|PLTP	REV__nc|ENSG00000100979|P55058-3|PLTP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.3189697265625	2	512.266542	1022.51853	0.58457	0.00029946	-0.64145	-0.00032859	-0.056879	-2.9137E-05	512.2660827887084	47.924	0.64886	47.924	47.682	48.331	0					36	22	2	0	0	0	0.30749	1	10890	10890		28.173	28.173	1	2559800	+		30980	14239	17972	17973	38120	38120					0.00817187271752573
NRETLPFF	8	Unmodified	_NRETLPFF_					0	0	0			REV__nc|ENSG00000100979|P55058-3|PLTP	REV__nc|ENSG00000100979|P55058-3|PLTP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.3191528320312	2	512.266542	1022.51853	0.6552	0.00033564	-1.2702	-0.00065066	-0.61496	-0.00031502	512.2657168759805	47.859	0.82704	47.906	47.539	48.366	0.047523					49	30	2	0	0	0	0.32778	1	10936	10936		20.871	12.278	1	2862600	+		30981	14239	17972	17973	38121	38121					0.00817187271752573
NRETLPFF	8	Unmodified	_NRETLPFF_					0	0	0			REV__nc|ENSG00000100979|P55058-3|PLTP	REV__nc|ENSG00000100979|P55058-3|PLTP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.3187255859375	2	512.266542	1022.51853	0.45014	0.00023059	-1.1379	-0.00058289	-0.68773	-0.0003523	512.265808468798	47.803	0.68277	47.846	47.637	48.32	0.043324					44	25	2	0	0	0	0.30749	1	10871	10871		28.173	12.326	1	2069600	+		30982	14239	17972	17973	38122	38122					0.00817187271752573
NRFEKRINVK	10	Unmodified	_NRFEKRINVK_					0	0	0		nc|ENSG00000187801|Q9UJL9-2|ZFP69B;ENSG00000187801|ENST00000361584|ZFP69B	nc|ENSG00000187801|Q9UJL9-2|ZFP69B	nc|ENSG00000187801|Q9UJL9-2|ZFP69B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.5792541503906	3	435.257961	1302.75205	-0.20775	-9.0426E-05	-0.4913	-0.00021384	-0.69906	-0.00030427	435.2577754135116	22.759	0.67204	22.671	22.321	22.993	-0.087608					38	23	2	0	0	0	0.32068	1	3171	3171		3.5871	0.95582	1	181930			30983	7711	17973	17974	38123	38123					0.11278663711254922
NRFEKRINVK	10	Unmodified	_NRFEKRINVK_					0	0	0		nc|ENSG00000187801|Q9UJL9-2|ZFP69B;ENSG00000187801|ENST00000361584|ZFP69B	nc|ENSG00000187801|Q9UJL9-2|ZFP69B	nc|ENSG00000187801|Q9UJL9-2|ZFP69B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	435.257961	1302.75205	-0.27174	-0.00011828	-0.70521	-0.00030695	-0.97695	-0.00042522	435.25771038744836	22.619	0.51375	22.619	22.39	22.904	0	-0.064018	-0.00012265	NaN	3.5871	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136130			30984	7711	17973	17974							0.11278663711254922
NRFEKRINVK	10	Unmodified	_NRFEKRINVK_					0	0	0		nc|ENSG00000187801|Q9UJL9-2|ZFP69B;ENSG00000187801|ENST00000361584|ZFP69B	nc|ENSG00000187801|Q9UJL9-2|ZFP69B	nc|ENSG00000187801|Q9UJL9-2|ZFP69B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	435.257961	1302.75205	-0.19238	-8.3737E-05	-0.74215	-0.00032303	-0.93454	-0.00040676	435.25750677704406	22.804	0.53097	22.759	22.529	23.06	-0.044867	0.075852	-0.00017089	NaN	3.5871	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137550			30985	7711	17973	17974							0.11278663711254922
NRFNYPFEL	9	Unmodified	_NRFNYPFEL_					0	0	0		ENSG00000178694|ENST00000314622|NSUN3;ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENSG00000178694|ENST00000314622|NSUN3	ENSG00000178694|ENST00000314622|NSUN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.2960205078125	2	600.29583	1198.57711	0.26334	0.00015808	0.23536	0.00014129	0.4987	0.00029937	600.2958115013474	65.011	0.78909	65.011	64.699	65.488	0					81	28	4	0	0	0	0.05341	1	16174	16174		51.63	26.639	1	945560			30986	7069	17974	17975	38124	38124					-0.014237561537584043
NRFNYPFEL	9	Unmodified	_NRFNYPFEL_					0	0	0		ENSG00000178694|ENST00000314622|NSUN3;ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENSG00000178694|ENST00000314622|NSUN3	ENSG00000178694|ENST00000314622|NSUN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.7802734375	2	600.29583	1198.57711	0.36952	0.00022182	0.25041	0.00015032	0.61993	0.00037214	600.2959135040971	64.946	0.74932	65.035	64.742	65.491	0.088882					73	27	5	0	0	0	0.23235	1	16165	16165		21.537	8.4945	1	1235700			30987	7069	17974	17975	38125	38125					-0.014237561537584043
NRFNYPFEL	9	Unmodified	_NRFNYPFEL_					0	0	0		ENSG00000178694|ENST00000314622|NSUN3;ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENSG00000178694|ENST00000314622|NSUN3	ENSG00000178694|ENST00000314622|NSUN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.2962646484375	2	600.29583	1198.57711	0.084091	5.048E-05	0.15998	9.6036E-05	0.24407	0.00014652	600.2960001607163	65.111	0.80608	65.1	64.78	65.586	-0.011337					72	29	4	0	0	0	0.03069	1	16168	16168		60.074	35.083	1	1220600			30988	7069	17974	17975	38126	38126					-0.014237561537584043
NRFRKFPF	8	Unmodified	_NRFRKFPF_					0	0	0		KCNK18|p.R174H|1|0.13|ENSG00000186795|chr10:117209665-117209665|G/A|missense_variant;ENSG00000186795|ENST00000334549|KCNK18	KCNK18|p.R174H|1|0.13|ENSG00000186795|chr10:117209665-117209665|G/A|missense_variant	KCNK18|p.R174H|1|0.13|ENSG00000186795|chr10:117209665-117209665|G/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2969970703125	2	556.311618	1110.60868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.94	1	100.97	100.47	101.47	0.027206								0	0	0	0.37078	1	26939	26939		5.2307	1.2863	1				30989	7642	17975	17976	38127	38127					0.05780281390843811
NRGPAYGL	8	Unmodified	_NRGPAYGL_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF;ENST00000592923.5_1_19:11649661-11650145:+|nuORF;ENST00000588468.1_1_19:11649742-11652758:+|nuORF;ENSG00000130176|ENST00000252456|CNN1	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.8874816894531	2	424.224677	846.434801	-0.072782	-3.0876E-05	-0.88827	-0.00037683	-0.96105	-0.0004077	424.2240998172349	30.635	0.42804	30.663	30.382	30.81	0.027948					22	14	2	0	0	0	0.31375	1	5595	5595		26.341	6.9023	1	176440			30990	5369	17976	17977	38128	38128					0.005440758947088398
NRGQFFTVY	9	Unmodified	_NRGQFFTVY_					0	0	0		nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000587673.5_1_19:1109158-1109530:-|nuORF	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.2827758789062	2	566.282723	1130.55089	0.32514	0.00018412	0.14653	8.2979E-05	0.47167	0.0002671	566.282737868399	52.652	0.76587	52.652	52.382	53.148	0					39	23	2	0	0	0	0.11234	1	12370	12370		51.63	23.143	1	1282900			30991	798	17977	17978	38129	38129					-0.009160253252503026
NRGQFFTVY	9	Unmodified	_NRGQFFTVY_					0	0	0		nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000587673.5_1_19:1109158-1109530:-|nuORF	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.2828979492188	2	566.282723	1130.55089	0.50222	0.0002844	0.2702	0.00015301	0.77243	0.00043741	566.2826928682243	52.521	0.62107	52.571	52.363	52.984	0.050571					48	22	3	0	0	0	0.04299	1	12361	12361		55.503	21.4	1	1283400			30992	798	17977	17978	38130	38130					-0.009160253252503026
NRGQFFTVY	9	Unmodified	_NRGQFFTVY_					0	0	0		nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000587673.5_1_19:1109158-1109530:-|nuORF	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	nc|ENSG00000064932|Q9Y2G9-3|SBNO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.2827758789062	2	566.282723	1130.55089	0.2345	0.00013279	0.91049	0.00051559	1.145	0.00064839	566.2829667923917	52.778	0.70743	52.777	52.548	53.256	-0.00081253					62	25	4	0	0	0	0.026579	1	12391	12391		61.602	25.475	1	1271600			30993	798	17977	17978	38131	38131					-0.009160253252503026
NRGSDIQFMK	10	Unmodified	_NRGSDIQFMK_					0	0	0			REV__nc|ENSG00000157087|Q01814-4|ATP2B2	REV__nc|ENSG00000157087|Q01814-4|ATP2B2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.2861328125	2	598.298047	1194.58154	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.879	1	66.962	66.462	67.462	0.083832								0	0	0	0.35097	1	16755	16755		14.405	1.5328	1		+		30994	16770	17978	17979	38132	38132					-0.007966150025367824
NRHALIAG	8	Unmodified	_NRHALIAG_					0	0	0			REV__ENST00000466411.1_1_7:73241946-73243545:+|nuORF	REV__ENST00000466411.1_1_7:73241946-73243545:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2461853027344	2	426.245944	850.477334	-0.090954	-3.8769E-05	0.050941	2.1713E-05	-0.040013	-1.7055E-05	426.2459475908554	74.645	0.67068	74.697	74.405	75.076	0.052361					39	23	2	0	0	0	0.45015	1	19124	19124		5.7604	0	1	509210	+		30995	21287	17979	17980	38133	38133					0.046114710229517186
NRHALIAG	8	Unmodified	_NRHALIAG_					0	0	0			REV__ENST00000466411.1_1_7:73241946-73243545:+|nuORF	REV__ENST00000466411.1_1_7:73241946-73243545:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	426.245944	850.477334	0.2799	0.00011931	-0.19313	-8.2319E-05	0.086772	3.6986E-05	426.2458143210894	74.738	0.90709	74.738	74.432	75.339	0	0.017564	-7.3879E-05	NaN	5.7604	46	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	489370	+		30996	21287	17979	17980							0.046114710229517186
NRHALIAG	8	Unmodified	_NRHALIAG_					0	0	0			REV__ENST00000466411.1_1_7:73241946-73243545:+|nuORF	REV__ENST00000466411.1_1_7:73241946-73243545:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	426.245944	850.477334	-0.090954	-3.8769E-05	0.050941	2.1713E-05	-0.040013	-1.7055E-05	426.2459475908554	74.645	0.67068	74.697	74.405	75.076	0.052361	-0.023054	0.00013419	NaN	5.7604	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	509210	+		30997	21287	17979	17980							0.046114710229517186
NRHALIAG	8	Unmodified	_NRHALIAG_					0	0	0			REV__ENST00000466411.1_1_7:73241946-73243545:+|nuORF	REV__ENST00000466411.1_1_7:73241946-73243545:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	426.245944	850.477334	0.21021	8.9601E-05	-0.24282	-0.0001035	-0.032614	-1.3902E-05	426.24576447174496	74.757	0.69172	74.725	74.443	75.135	-0.031487	0.0054898	-0.00011624	NaN	5.7604	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	507190	+		30998	21287	17979	17980							0.046114710229517186
NRHHFRCR	8	Unmodified	_NRHHFRCR_					0	0	0			REV__ENST00000460062.6_1_20:480238-524362:-|nuORF	REV__ENST00000460062.6_1_20:480238-524362:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3255004882812	2	563.2834	1124.55225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.16	1	104.16	103.66	104.66	0								0	0	0	0.37664	1	27658	27658		2.5775	0.27475	1		+		30999	21198	17980	17981	38134	38134					-0.00504669717474826
NRIPISIKF	9	Unmodified	_NRIPISIKF_					0	0	0			REV__ENSG00000221890|ENST00000333039|NPTXR	REV__ENSG00000221890|ENST00000333039|NPTXR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.33447265625	2	544.334759	1086.65496	0.32016	0.00017427	-0.25828	-0.00014059	0.06188	3.3683E-05	544.334382204127	46.526	0.46244	46.526	46.298	46.76	0					44	16	4	0	0	0	0.037019	1	10508	10508		57.722	23.32	1	1193700	+		31000	19096	17981	17982	38135	38135					0.11510301502289622
NRIPISIKF	9	Unmodified	_NRIPISIKF_					0	0	0			REV__ENSG00000221890|ENST00000333039|NPTXR	REV__ENSG00000221890|ENST00000333039|NPTXR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3343505859375	2	544.334759	1086.65496	0.67012	0.00036477	-0.51109	-0.0002782	0.15903	8.6564E-05	544.3342388322462	46.447	0.53834	46.5	46.252	46.79	0.052574					45	19	3	0	0	0	0.037019	1	10461	10461		57.722	23.32	1	1356600	+		31001	19096	17981	17982	38136	38136					0.11510301502289622
NRIPISIKF	9	Unmodified	_NRIPISIKF_					0	0	0			REV__ENSG00000221890|ENST00000333039|NPTXR	REV__ENSG00000221890|ENST00000333039|NPTXR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.836181640625	2	544.334759	1086.65496	0.41784	0.00022744	-0.15777	-8.5879E-05	0.26007	0.00014157	544.334404904756	46.504	0.67069	46.558	46.269	46.939	0.054375					44	23	3	0	0	0	0.026579	1	10468	10468		61.602	19.762	1	1260500	+		31002	19096	17981	17982	38137	38137					0.11510301502289622
NRIPISIKF	9	Unmodified	_NRIPISIKF_					0	0	0			REV__ENSG00000221890|ENST00000333039|NPTXR	REV__ENSG00000221890|ENST00000333039|NPTXR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	544.334759	1086.65496	0.32016	0.00017427	-0.25828	-0.00014059	0.06188	3.3683E-05	544.334382204127	46.526	0.46244	46.526	46.298	46.76	0	-0.0020198	3.5105E-05	NaN	61.602	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1193700	+		31003	19096	17981	17982							0.11510301502289622
NRIPISIKF	9	Unmodified	_NRIPISIKF_					0	0	0			REV__ENSG00000221890|ENST00000333039|NPTXR	REV__ENSG00000221890|ENST00000333039|NPTXR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.334759	1086.65496	0.67012	0.00036477	-0.51109	-0.0002782	0.15903	8.6564E-05	544.3342388322462	46.447	0.53834	46.5	46.252	46.79	0.052574	-0.027959	-0.00024012	NaN	61.602	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1356600	+		31004	19096	17981	17982							0.11510301502289622
NRIPISIKF	9	Unmodified	_NRIPISIKF_					0	0	0			REV__ENSG00000221890|ENST00000333039|NPTXR	REV__ENSG00000221890|ENST00000333039|NPTXR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	544.334759	1086.65496	0.41784	0.00022744	-0.15777	-8.5879E-05	0.26007	0.00014157	544.334404904756	46.504	0.67069	46.558	46.269	46.939	0.054375	0.029979	0.00014453	NaN	61.602	44	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1260500	+		31005	19096	17981	17982							0.11510301502289622
NRKKELFVLE	10	Unmodified	_NRKKELFVLE_					0	0	0			REV__ENST00000396137.4_1_5:78618750-78618846:+|nuORF	REV__ENST00000396137.4_1_5:78618750-78618846:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.3665771484375	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.42	1	96.42	95.92	96.92	0								0	0	0	0.38126	1	25761	25761		1.6526	0	1		+		31006	20649	17982	17983	38138	38138					0.10829323385632961
NRLEYIHQV	9	Unmodified	_NRLEYIHQV_					0	0	0			REV__nc|ENSG00000138448|P06756-3|ITGAV	REV__nc|ENSG00000138448|P06756-3|ITGAV	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8136596679688	2	586.314554	1170.61456	0.29955	0.00017563	-0.27243	-0.00015973	0.027124	1.5903E-05	586.3141810607531	101.02	0.13046	101.02	100.94	101.07	-0.0054703					24	17	2	0	0	0	0.26145	1	26977	26977		2.0598	0	1	120420	+		31007	15930	17983	17984	38139	38139					0.036073351118375285
NRLGRKGIKQ	10	Unmodified	_NRLGRKGIKQ_					0	0	0		ENSG00000083782|ENST00000261172|EPYC	ENSG00000083782|ENST00000261172|EPYC	ENSG00000083782|ENST00000261172|EPYC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	585.364913	1168.71527	0.32364	0.00018945	-0.49491	-0.0002897	-0.17127	-0.00010026	585.3644971519268	87.341	1.0019	87.428	87.119	88.121	0.08709					116	51	3	0	0	0	0.31889	1	23016	23016		6.2058	1.8765	1	573920			31008	1227	17984	17985	38140	38140					0.1376641188535359
NRLHRFIQ	8	Unmodified	_NRLHRFIQ_					0	0	0			REV__ENST00000507488.6_1_3:130569474-130569600:+|nuORF	REV__ENST00000507488.6_1_3:130569474-130569600:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3013305664062	2	542.312149	1082.60975	0.50711	0.00027501	0.90473	0.00049065	1.4118	0.00076566	542.3131266405709	39.556	0.58131	39.648	39.47	40.051	0.09267					38	20	3	0	0	0	0.42758	1	8317	8317		13.508	1.8676	1	142020	+		31009	21761	17985	17986	38141	38141					0.07174495759750243
NRLLLAHHGL	10	Unmodified	_NRLLLAHHGL_					0	0	0		ENST00000562532.2_1_20:30584341-30584887:+|nuORF	ENST00000562532.2_1_20:30584341-30584887:+|nuORF	ENST00000562532.2_1_20:30584341-30584887:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.302490234375	2	572.340907	1142.66726	-0.0019732	-1.1293E-06	-0.19871	-0.00011373	-0.20069	-0.00011486	572.3407743478402	13.48	0.32643	13.381	13.217	13.544	-0.099291					21	11	3	0	0	0	0.32123	1	465	465		1.6526	0.17072	1	92341			31010	11924	17986	17987	38142	38142					0.10163337965332175
NRLLQRSRSS	10	Unmodified	_NRLLQRSRSS_					0	0	0		nc|ENSG00000154027|Q9Y6K8-3|AK5;ENSG00000154027|ENST00000354567|AK5;nc|ENSG00000154027|Q9Y6K8-2|AK5	nc|ENSG00000154027|Q9Y6K8-3|AK5	nc|ENSG00000154027|Q9Y6K8-3|AK5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.847412109375	2	608.847084	1215.67962	0.44918	0.00027348	-0.39572	-0.00024093	0.053469	3.2554E-05	608.847096048271	82.116	1.4171	82.116	81.558	82.975	0					91	53	3	0	0	0	0.40106	1	21430	21430		3.2813	0	1	695750			31011	5102	17987	17988	38143	38143					0.08040329637719879
NRLPLVVSF	9	Unmodified	_NRLPLVVSF_					0	0	0		nc|ENSG00000109270|Q9UHA4-2|LAMTOR3;ENSG00000109270|ENST00000499666|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3056030273438	2	522.813659	1043.61277	0.71251	0.00037251	0.48165	0.00025181	1.1942	0.00062432	522.8138674718884	65.982	0.47144	65.982	65.845	66.317	0					28	16	3	0	0	0	0.17242	1	16534	16534		29.082	11.969	1	425110			31012	2247	17988	17989	38144	38144					0.09270326093883341
NRLRVTTY	8	Unmodified	_NRLRVTTY_					0	0	0		ENST00000599904.2_1_20:45947364-45947934:+|nuORF	ENST00000599904.2_1_20:45947364-45947934:+|nuORF	ENST00000599904.2_1_20:45947364-45947934:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.32769775390625	2	511.790715	1021.56688	0.32305	0.00016533	-0.88291	-0.00045186	-0.55986	-0.00028653	511.789202886275	87.127	0.16618	87.214	87.163	87.329	0.08709					8	6	2	0	0	0	0.34247	1	22942	22942		8.5933	0	1	25690			31013	12243	17989	17990	38145	38145					0.05695680911640011
NRLTQCAK	8	Unmodified	_NRLTQCAK_					0	0	0			REV__ENSG00000188694|ENST00000340345|KRTAP24-1	REV__ENSG00000188694|ENST00000340345|KRTAP24-1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.6080017089844	2	467.250369	932.486184	0.3365	0.00015723	-1.4492	-0.00067712	-1.1127	-0.00051989	467.24959197400926	90.567	0.34581	90.567	90.353	90.699	0.00039673					37	23	2	0	0	0	0.34272	1	23969	23969		7.9102	1.187	1	162220	+		31014	18565	17990	17991	38146	38146					0.017240765970996108
NRLVLPLL	8	Unmodified	_NRLVLPLL_					0	0	0			REV__nc|ENSG00000158517|P14598-2|NCF1	REV__nc|ENSG00000158517|P14598-2|NCF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.3135070800781	2	469.313295	936.612037	-0.10664	-5.0046E-05	0.51522	0.0002418	0.40858	0.00019175	469.31351877124223	65.351	0.53401	65.351	65.1	65.634	0					40	18	3	0	0	0	0.35375	1	16292	16292		24.674	0	1	396270	+		31015	21103	17991	17992	38147	38147					0.14119531444839595
NRMHIRRKR	9	Unmodified	_NRMHIRRKR_					0	0	0		ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3770141601562	2	633.875456	1265.73636	0.19437	0.0001232	-2.5209	-0.0015979	-2.3265	-0.0014747	633.8715454238442	112.96	0.6295	112.94	112.82	113.45	-0.017311					112	77	2	0	0	0	0.35563	1	29441	29441		0.52476	0.066424	1	49706		+	31016	8287	17992	17993	38148	38148					0.11412098713230989
NRMIWHGFL	9	Unmodified	_NRMIWHGFL_					0	0	0			REV__ENST00000542575.6_2_19:47278700-47278742:-|nuORF	REV__ENST00000542575.6_2_19:47278700-47278742:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.3019409179688	2	587.302936	1172.59132	-0.0021255	-1.2483E-06	-1.1896	-0.00069865	-1.1917	-0.0006999	587.3021421249797	14.445	0.41133	14.34	14.212	14.623	-0.10466					28	13	3	0	0	0	0.32733	1	741	741		4.756	0.42677	1	83348	+		31017	22139	17993	17994	38149	38149					0.011926177935492888
NRMIWHGFL	9	Unmodified	_NRMIWHGFL_					0	0	0			REV__ENST00000542575.6_2_19:47278700-47278742:-|nuORF	REV__ENST00000542575.6_2_19:47278700-47278742:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	587.302936	1172.59132	0.040851	2.3992E-05	-1.0765	-0.00063223	-1.0357	-0.00060824	587.302244119325	14.311	0.31383	14.311	14.164	14.478	0	-0.036527	9.4604E-05	NaN	4.756	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102740	+		31018	22139	17993	17994							0.011926177935492888
NRNRLLSF	8	Unmodified	_NRNRLLSF_					0	0	0			REV__ENST00000581677.1_1_18:268334-268625:+|nuORF	REV__ENST00000581677.1_1_18:268334-268625:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.28277587890625	2	510.290882	1018.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.356	1	89.356	88.856	89.856	0								0	0	0	0.37078	1	23642	23642		5.2307	0	1		+		31019	22489	17994	17995	38150	38150					0.05867100631519406
NRPEFITEF	9	Unmodified	_NRPEFITEF_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.7877197265625	2	576.787838	1151.56112	0.35097	0.00020243	-0.16962	-9.7833E-05	0.18135	0.0001046	576.7876942961883	56.649	1.2087	56.649	56.344	57.552	0					126	44	4	0	0	0	0.0013683	3	13616	13572;13616;13662		118.07	74.21	1	4531400			31020	692;10077	17995	17996	38151;38152;38153	38152					-0.008594623906901688
NRPEFITEF	9	Unmodified	_NRPEFITEF_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.7879638671875	2	576.787838	1151.56112	0.58571	0.00033783	-0.28783	-0.00016601	0.29789	0.00017182	576.7876156781632	56.551	1.2068	56.629	56.331	57.538	0.078671					122	44	4	0	0	0	0.0024096	2	13604	13554;13604		106.94	68.765	1	4450300			31021	692;10077	17995	17996	38154;38155	38155					-0.008594623906901688
NRPEFITEF	9	Unmodified	_NRPEFITEF_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.787841796875	2	576.787838	1151.56112	0.62677	0.00036151	-0.32331	-0.00018648	0.30345	0.00017503	576.787621534129	56.842	1.0636	56.822	56.541	57.604	-0.019081					106	38	4	0	0	0	0.00045155	2	13691	13642;13691		129.77	77.504	1	5159100			31022	692;10077	17995	17996	38156;38157	38157					-0.008594623906901688
NRPLFYVINN	10	Unmodified	_NRPLFYVINN_					0	0	0			REV__ENSG00000137574|ENST00000260129|TGS1	REV__ENSG00000137574|ENST00000260129|TGS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.862548828125	3	417.227779	1248.66151	-0.12584	-5.2504E-05	0.20361	8.4953E-05	0.077773	3.2449E-05	417.5614602504756	19.828	0.1374	19.828	19.739	19.877	0					6	4	2	0	0	0	0.31889	1	2358	2358		3.3196	0.68841	1	10718	+		31023	15872	17996	17997	38158	38158					0.047121946629886224
NRPRCRAK	8	Unmodified	_NRPRCRAK_					0	0	0			REV__ENST00000579456.5_1_17:57763057-57768004:+|nuORF	REV__ENST00000579456.5_1_17:57763057-57768004:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2647399902344	2	500.782702	999.55085	0.24864	0.00012452	0.41278	0.00020671	0.66142	0.00033123	500.7827617718609	30.818	0.67171	30.846	30.523	31.194	0.027948					35	23	2	0	0	0	0.3366	1	5602	5602		7.9102	0	1	148930	+		31024	22475	17997	17998	38159	38159					0.05105696193766107
NRPSTLTV	8	Unmodified	_NRPSTLTV_					0	0	0		ENST00000380882.5_4:85656-87337:+|nuORF;ENSG00000272602|ENST00000610261|ZNF595	ENST00000380882.5_4:85656-87337:+|nuORF	ENST00000380882.5_4:85656-87337:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.7156982421875	2	444.250892	886.48723	0.22975	0.00010207	-0.047884	-2.1273E-05	0.18186	8.0793E-05	444.250721904717	31.22	0.83959	31.261	30.933	31.772	0.040991					78	30	4	0	0	0	0.34226	1	5927	5927		6.2058	3.6283	1	1811400			31025	8703	17998	17999	38160	38160					0.039446142376732496
NRQVIHIA	8	Unmodified	_NRQVIHIA_					0	0	0		ENSG00000198633|ENST00000433050|ZNF534;nc|ENSG00000198633|Q76KX8|ZNF534	ENSG00000198633|ENST00000433050|ZNF534	ENSG00000198633|ENST00000433050|ZNF534	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.2463073730469	2	475.780151	949.545748	-0.19497	-9.2763E-05	-0.028808	-1.3706E-05	-0.22378	-0.00010647	475.7801007755917	13.179	0.36938	13.179	13.058	13.427	0					19	12	2	0	0	0	0.34337	1	348	348		5.2307	0	1	126800			31026	8097	17999	18000	38161	38161					0.06895715602809105
NRRAKFRKQER	11	Unmodified	_NRRAKFRKQER_					0	0	0		ENSG00000165462|ENST00000298231|PHOX2A;ENSG00000109132|ENST00000226382|PHOX2B	ENSG00000165462|ENST00000298231|PHOX2A	ENSG00000165462|ENST00000298231|PHOX2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.5882873535156	3	496.958797	1487.85456	0.59255	0.00029447	1.1006	0.00054697	1.6932	0.00084144	496.9593096453039	29.183	0.54331	29.183	28.978	29.521	0					35	19	3	0	0	0	0.33336	1	5170	5170		1.1098	0.096179	1	119400			31027	2238	18000	18001	38162	38162					0.13014749502735867
NRRFSIKLGP	10	Unmodified	_NRRFSIKLGP_					0	0	0			REV__FGD2|p.V326G|1|0.29|ENSG00000146192|chr6:37014986-37014986|T/G|missense_variant	REV__FGD2|p.V326G|1|0.29|ENSG00000146192|chr6:37014986-37014986|T/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.2666625976562	2	594.354014	1186.69348	0.54209	0.0003222	2.9614	0.0017601	3.5035	0.0020823	594.3557453723946	72.483	0.29227	72.483	72.32	72.613	0					13	10	2	0	0	0	0.31401	1	18483	18483		14.405	2.2306	1	108630	+		31028	22686	18001	18002	38163	38163					0.10759607136787963
NRRKWKRYLL	10	Unmodified	_NRRKWKRYLL_					0	0	0		nc|ENSG00000162542|Q5TGY1-2|TMCO4;ENSG00000162542|ENST00000294543|TMCO4	nc|ENSG00000162542|Q5TGY1-2|TMCO4	nc|ENSG00000162542|Q5TGY1-2|TMCO4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.29315185546875	3	478.293117	1431.85752	0.20143	9.6343E-05	0.21496	0.00010282	0.41639	0.00019916	478.2930998255713	93.265	0.81879	93.352	93.258	94.076	0.086678					85	67	2	0	0	0	0.41512	1	24827	24827		0.69767	0	1	519720			31029	5579	18002	18003	38164	38164					0.15886624627546553
NRRRKRPRLRE	11	Unmodified	_NRRRKRPRLRE_					0	0	0			REV__nc|ENSG00000133193|Q969W3|VCF1	REV__nc|ENSG00000133193|Q969W3|VCF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7892456054688	3	512.985457	1535.93454	0.3796	0.00019473	-0.32207	-0.00016522	0.057527	2.951E-05	512.9853064210347	92.347	0.86625	92.348	91.848	92.714	0.00047302					159	56	4	0	0	0	0.33349	1	24431	24431		0.32927	0.24592	1	636420	+		31030	15613	18003	18004	38165	38165					0.1880123589660343
NRRRRQTWRRF	11	Unmodified	_NRRRRQTWRRF_					0	0	0			REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3155517578125	3	544.645324	1630.91414	0.52309	0.0002849	-0.82803	-0.00045098	-0.30494	-0.00016608	544.6448198312313	90.268	0.42542	90.268	90.059	90.484	0					61	34	2	0	0	0	0.33351	1	23947	23947		0.094841	0.094841	1	145480	+		31031	19474	18004	18005	38166	38166					0.12392065236736016
NRRRRQTWRRF	11	Unmodified	_NRRRRQTWRRF_					0	0	0			REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3167114257812	3	544.645324	1630.91414	0.40627	0.00022127	-0.42256	-0.00023015	-0.016293	-8.8741E-06	544.9793687065379	92.514	0.17573	92.514	92.451	92.627	0					16	12	2	0	0	0	0.33351	1	24615	24615		0.094841	0.094841	1	73899	+		31032	19474	18004	18005	38167	38167					0.12392065236736016
NRRRRQTWRRF	11	Unmodified	_NRRRRQTWRRF_					0	0	0			REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3159790039062	3	544.645324	1630.91414	0.70198	0.00038233	-1.0281	-0.00055997	-0.32615	-0.00017764	544.6448051152303	89.382	0.28328	89.382	89.267	89.551	-0.00080872					19	15	2	0	0	0	0.33351	1	23626	23626		0.094841	0.094841	1	121750	+		31033	19474	18004	18005	38168	38168					0.12392065236736016
NRRRRQTWRRF	11	Unmodified	_NRRRRQTWRRF_					0	0	0			REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	544.645324	1630.91414	0.66559	0.00036251	-0.78529	-0.00042771	-0.1197	-6.5194E-05	544.6448316841913	89.009	0.44957	89.099	88.872	89.322	0.090569	-0.14127	0.00023333	NaN	0.094841	24	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81023	+		31034	19474	18004	18005							0.12392065236736016
NRRRRQTWRRF	11	Unmodified	_NRRRRQTWRRF_					0	0	0			REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	544.645324	1630.91414	0.73825	0.00040209	-0.83492	-0.00045474	-0.096667	-5.2649E-05	544.9792883835888	90.652	0.29285	90.652	90.456	90.749	0.0003891	0.19212	-7.1849E-06	NaN	0.094841	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139970	+		31035	19474	18004	18005							0.12392065236736016
NRRRRQTWRRF	11	Unmodified	_NRRRRQTWRRF_					0	0	0			REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	544.645324	1630.91414	0.76549	0.00041692	-1.2566	-0.00068439	-0.4911	-0.00026747	544.6447743157497	92.291	0.072441	92.291	92.232	92.305	0.00046539	-0.11145	-0.00095189	NaN	0.094841	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52322	+		31036	19474	18004	18005							0.12392065236736016
NRSLLSEL	8	Unmodified	_NRSLLSEL_					0	0	0		ENSG00000154451|ENST00000370459|GBP5;ENST00000471171.1_1_1:89726389-89727847:-|nuORF;ENST00000481145.1_1_1:89726389-89728307:-|nuORF	ENSG00000154451|ENST00000370459|GBP5	ENSG00000154451|ENST00000370459|GBP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.78851318359375	2	466.263999	930.513445	0.65461	0.00030522	0.71958	0.00033551	1.3742	0.00064073	466.26541746455234	50.582	0.33906	50.627	50.372	50.711	0.044888					16	11	2	0	0	0	0.29394	1	11716	11716		36.127	0	1	95697			31037	5130	18005	18006	38169	38169					0.04540883409140406
NRSNIIAHFLW	11	Unmodified	_NRSNIIAHFLW_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-10|HYDIN;nc|ENSG00000157423|Q4G0P3-8|HYDIN;nc|ENSG00000157423|Q4G0P3-5|HYDIN;nc|ENSG00000157423|Q4G0P3-6|HYDIN;HYDIN|p.P758Nfs*97|1|0.11|ENSG00000157423|chr16:71062273-71062274|-/AGTT|frameshift_variant	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.2662048339844	3	457.582444	1369.7255	-0.050586	-2.3147E-05	1.6007	0.00073246	1.5501	0.00070931	457.58333087248343	19.05	0.3569	18.932	18.647	19.004	-0.11739					19	12	2	0	0	0	0.3331	1	2133	2133		2.2527	0	1	29555			31038	5305	18006	18007	38170	38170					0.05542974819945812
NRSNIIAHFLW	11	Unmodified	_NRSNIIAHFLW_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-10|HYDIN;nc|ENSG00000157423|Q4G0P3-8|HYDIN;nc|ENSG00000157423|Q4G0P3-5|HYDIN;nc|ENSG00000157423|Q4G0P3-6|HYDIN;HYDIN|p.P758Nfs*97|1|0.11|ENSG00000157423|chr16:71062273-71062274|-/AGTT|frameshift_variant	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	457.582444	1369.7255	-0.11646	-5.3288E-05	1.3848	0.00063364	1.2683	0.00058035	457.9173855216965	18.867	0.27747	18.809	18.737	19.014	-0.058172	-0.061495	-0.00011572	NaN	4.1166	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34194			31039	5305	18006	18007							0.05542974819945812
NRTRDKDR	8	Unmodified	_NRTRDKDR_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3009643554688	2	530.783953	1059.55335	0.24328	0.00012913	0.99423	0.00052772	1.2375	0.00065685	530.7845308806595	23.442	0.16277	23.354	23.27	23.433	-0.087608					8	5	2	0	0	0	0.32886	1	3433	3433		21.747	1.293	1	19720	+		31040	18951	18007	18008	38171	38171					0.02595823132401165
NRVFFGFLN	9	Unmodified	_NRVFFGFLN_					0	0	0			REV__nc|ENSG00000164244|Q96M27-5|PRRC1	REV__nc|ENSG00000164244|Q96M27-5|PRRC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7355346679688	2	557.295633	1112.57671	0.45291	0.0002524	0.24744	0.0001379	0.70035	0.0003903	557.2953536894821	83.228	0.97692	83.208	82.896	83.873	-0.020584					48	40	2	0	0	0	0.2451	1	21819	21819		15.847	2.3393	1	101880	+		31041	23061	18008	18009	38172	38172					0.02492868917056512
NRWKKKHS	8	Unmodified	_NRWKKKHS_					0	0	0		DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant;ENSG00000178105|ENST00000322536|DDX10;ENST00000534774.1_1_11:108535817-108546498:+|nuORF	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3123168945312	2	542.312149	1082.60975	0.22546	0.00012227	0.31834	0.00017264	0.54379	0.0002949	542.3123156189952	12.692	0.46077	12.593	12.433	12.894	-0.099291					38	15	3	0	0	0	0.46022	1	236	236		2.3027	0	1	244740			31042	260	18009	18010	38173	38173					0.07174495759750243
NRYISIFKGLK	11	Unmodified	_NRYISIFKGLK_					0	0	0		TLR8|p.T750Rfs*47|1|0.05|ENSG00000101916|chrX:12921288-12921289|-/GAGTAGTTTGTTTC|frameshift_variant;ENSG00000101916|ENST00000218032|TLR8;nc|ENSG00000101916|Q9NR97-2|TLR8	TLR8|p.T750Rfs*47|1|0.05|ENSG00000101916|chrX:12921288-12921289|-/GAGTAGTTTGTTTC|frameshift_variant	TLR8|p.T750Rfs*47|1|0.05|ENSG00000101916|chrX:12921288-12921289|-/GAGTAGTTTGTTTC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.2579040527344	3	446.934595	1337.78196	0.419	0.00018727	3.3509	0.0014976	3.7699	0.0016849	447.27100188292735	44.991	1.7489	44.991	44.306	46.055	0					129	63	3	0	0	0	0.33056	1	9882	9882		5.8681	4.2759	1	970030			31043	1729	18010	18011	38174	38174					0.1265760265659992
NRYISIFKGLK	11	Unmodified	_NRYISIFKGLK_					0	0	0		TLR8|p.T750Rfs*47|1|0.05|ENSG00000101916|chrX:12921288-12921289|-/GAGTAGTTTGTTTC|frameshift_variant;ENSG00000101916|ENST00000218032|TLR8;nc|ENSG00000101916|Q9NR97-2|TLR8	TLR8|p.T750Rfs*47|1|0.05|ENSG00000101916|chrX:12921288-12921289|-/GAGTAGTTTGTTTC|frameshift_variant	TLR8|p.T750Rfs*47|1|0.05|ENSG00000101916|chrX:12921288-12921289|-/GAGTAGTTTGTTTC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.25799560546875	3	446.934595	1337.78196	0.40569	0.00018132	2.4629	0.0011007	2.8686	0.0012821	446.93419767161487	44.824	1.7618	44.899	44.148	45.91	0.075047					121	64	3	0	0	0	0.33056	1	9799	9799		5.8681	1.7515	1	677700			31044	1729	18010	18011	38175	38175					0.1265760265659992
NRYNQWLKRRL	11	Unmodified	_NRYNQWLKRRL_					0	0	0			REV__ENSG00000141569|ENST00000269383|TRIM65	REV__ENSG00000141569|ENST00000269383|TRIM65	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2777099609375	3	516.295297	1545.86406	-0.083956	-4.3346E-05	0.034774	1.7953E-05	-0.049183	-2.5393E-05	516.2954867790613	14.079	0.67083	13.975	13.46	14.131	-0.10466					38	23	3	0	0	0	0.33352	1	538	538		0.08335	0.010087	1	180000	+		31045	16084	18011	18012	38176	38176					0.11296517788218807
NSAYQAMEKRI	11	Unmodified	_NSAYQAMEKRI_					0	0	0			REV__ACACA|p.K956R|1|0.33|ENSG00000278540|chr17:37243435-37243435|T/C|missense_variant	REV__ACACA|p.K956R|1|0.33|ENSG00000278540|chr17:37243435-37243435|T/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.9031677246094	3	437.555566	1309.64487	-0.27095	-0.00011855	-0.43981	-0.00019244	-0.71076	-0.000311	437.55543223091036	28.042	0.56663	28.038	27.793	28.359	-0.0042572					41	19	3	0	0	0	0.43513	1	4890	4890		6.6235	0.75532	1	106940	+		31046	13068	18012	18013	38177	38177					0.0024332571472314157
NSCAMRLL	8	Unmodified	_NSCAMRLL_					0	0	0			REV__ENSG00000184166|ENST00000641833|OR1D2	REV__ENSG00000184166|ENST00000641833|OR1D2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.22723388671875	2	454.228048	906.441542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.573	1	80.638	80.138	81.138	0.065094								0	0	0	0.35466	1	20938	20938		12.532	0	1		+		31047	18305	18013	18014	38178	38178					-0.015420705405745139
NSCLNPMLYV	10	Unmodified	_NSCLNPMLYV_					0	0	0		ENSG00000171049|ENST00000340023|FPR2;ENSG00000171051|ENST00000304748|FPR1	ENSG00000171049|ENST00000340023|FPR2	ENSG00000171049|ENST00000340023|FPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.27294921875	2	577.272652	1152.53075	0.22829	0.00013179	-0.098428	-5.682E-05	0.12987	7.4969E-05	577.27274855414	21.614	1.4904	21.564	21.265	22.755	-0.049377					144	52	5	0	0	0	0.24105	1	2893	2893		27.629	4.8925	1	3067500			31048	6505	18014	18015	38179	38179					-0.03941280371736866
NSCMNPILYV	10	Unmodified	_NSCMNPILYV_					0	0	0		nc|ENSG00000174600|Q99788-2|CMKLR1;ENSG00000174600|ENST00000550402|CMKLR1	nc|ENSG00000174600|Q99788-2|CMKLR1	nc|ENSG00000174600|Q99788-2|CMKLR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.27294921875	2	577.272652	1152.53075	0.41384	0.0002389	-0.33124	-0.00019121	0.0826	4.7683E-05	577.2726504720731	21.674	1.1959	21.573	21.275	22.471	-0.10034					128	43	5	0	0	0	0.2811	1	2915	2915		22.736	0	1	3139800			31049	6805	18015	18016	38180	38180					-0.03941280371736866
NSCMNPILYV	10	Unmodified	_NSCMNPILYV_					0	0	0		nc|ENSG00000174600|Q99788-2|CMKLR1;ENSG00000174600|ENST00000550402|CMKLR1	nc|ENSG00000174600|Q99788-2|CMKLR1	nc|ENSG00000174600|Q99788-2|CMKLR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.2728881835938	2	577.272652	1152.53075	0.16271	9.393E-05	-0.10397	-6.0021E-05	0.058741	3.391E-05	577.2727802099769	24.314	0.9829	24.275	24.081	25.064	-0.038927					80	33	4	0	0	0	0.35231	1	3701	3701		12.241	0	1	1048500			31050	6805	18015	18016	38181	38181					-0.03941280371736866
NSCSLHLSL	9	Unmodified	_NSCSLHLSL_					0	0	0		nc|ENSG00000109685|O96028-2|NSD2	nc|ENSG00000109685|O96028-2|NSD2	nc|ENSG00000109685|O96028-2|NSD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2420959472656	2	487.242209	972.469866	-0.1033	-5.0331E-05	0.21281	0.00010369	0.10951	5.3357E-05	487.2422695893832	13.863	0.51086	13.758	13.538	14.049	-0.10466					27	17	2	0	0	0	0.24581	1	574	574		16.942	1.0951	1	69914			31051	12644	18016	18017	38182	38182					-0.017470493596420056
NSEFVVSDL	9	Unmodified	_NSEFVVSDL_					0	0	0			REV__ENSG00000135248|ENST00000621392|GARIN1B	REV__ENSG00000135248|ENST00000621392|GARIN1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2634582519531	2	505.245472	1008.47639	0.1015	5.1281E-05	0.32088	0.00016213	0.42238	0.00021341	505.2457220670503	76.531	0.30529	76.584	76.451	76.756	0.053413					17	10	2	0	0	0	0.12642	1	19697	19697		34.402	3.7652	1	182880	+		31052	15728	18017	18018	38183	38183					-0.027508329272677656
NSEHEPLGK	9	Unmodified	_NSEHEPLGK_					0	0	0		ENSG00000184434|ENST00000380055|LRRC19	ENSG00000184434|ENST00000380055|LRRC19	ENSG00000184434|ENST00000380055|LRRC19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2336120605469	2	505.748713	1009.48287	0.16812	8.5026E-05	-0.87503	-0.00044254	-0.70691	-0.00035752	505.748412483926	19.159	0.63637	19.103	18.848	19.485	-0.055693					36	21	2	0	0	0	0.33018	1	2186	2186		4.3292	0.38484	1	77635			31053	7454	18018	18019	38184	38184					-0.021488949758918352
NSFDPSKITRK	11	Unmodified	_NSFDPSKITRK_					0	0	0		nc|ENSG00000142856|Q13352-4|ITGB3BP;nc|ENSG00000142856|Q13352-3|ITGB3BP;ENST00000460251.5_1_1:63924001-63988867:-|nuORF;nc|ENSG00000142856|Q13352-2|ITGB3BP;ENSG00000142856|ENST00000271002|ITGB3BP;ENST00000460394.5_1_1:63917661-63988804:-|nuORF;nc|ENSG00000142856|Q13352-5|ITGB3BP	nc|ENSG00000142856|Q13352-4|ITGB3BP	nc|ENSG00000142856|Q13352-4|ITGB3BP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.5699462890625	3	431.570093	1291.68845	-0.16496	-7.119E-05	-0.055933	-2.4139E-05	-0.22089	-9.5329E-05	431.57005373351257	26.831	1.0593	26.831	26.321	27.38	0					93	36	4	0	0	0	0.090382	1	4499	4499		41.567	24.518	1	535430			31054	4465	18019	18020	38185	38185					0.05427258483496189
NSFDPSKITRK	11	Unmodified	_NSFDPSKITRK_					0	0	0		nc|ENSG00000142856|Q13352-4|ITGB3BP;nc|ENSG00000142856|Q13352-3|ITGB3BP;ENST00000460251.5_1_1:63924001-63988867:-|nuORF;nc|ENSG00000142856|Q13352-2|ITGB3BP;ENSG00000142856|ENST00000271002|ITGB3BP;ENST00000460394.5_1_1:63917661-63988804:-|nuORF;nc|ENSG00000142856|Q13352-5|ITGB3BP	nc|ENSG00000142856|Q13352-4|ITGB3BP	nc|ENSG00000142856|Q13352-4|ITGB3BP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.57000732421875	3	431.570093	1291.68845	-0.09175	-3.9596E-05	-0.12579	-5.4289E-05	-0.21754	-9.3885E-05	431.5700329778839	26.801	0.96105	26.78	26.36	27.321	-0.021412					91	33	4	0	0	0	0.073872	1	4469	4469		46.34	34.112	1	504750			31055	4465	18019	18020	38186	38186					0.05427258483496189
NSFDPSKITRK	11	Unmodified	_NSFDPSKITRK_					0	0	0		nc|ENSG00000142856|Q13352-4|ITGB3BP;nc|ENSG00000142856|Q13352-3|ITGB3BP;ENST00000460251.5_1_1:63924001-63988867:-|nuORF;nc|ENSG00000142856|Q13352-2|ITGB3BP;ENSG00000142856|ENST00000271002|ITGB3BP;ENST00000460394.5_1_1:63917661-63988804:-|nuORF;nc|ENSG00000142856|Q13352-5|ITGB3BP	nc|ENSG00000142856|Q13352-4|ITGB3BP	nc|ENSG00000142856|Q13352-4|ITGB3BP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.570068359375	3	431.570093	1291.68845	0.049253	2.1256E-05	-0.27925	-0.00012051	-0.22999	-9.9258E-05	431.5699842136779	26.889	0.98227	26.877	26.392	27.374	-0.011562					98	34	4	0	0	0	0.16139	1	4468	4468		34.674	23.608	1	561570			31056	4465	18019	18020	38187	38187					0.05427258483496189
NSIKQRKPKL	10	Unmodified	_NSIKQRKPKL_					0	0	0		ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1	ENSG00000134121|ENST00000256509|CHL1	ENSG00000134121|ENST00000256509|CHL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3699951171875	2	606.382771	1210.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.44	1	100.48	99.976	100.98	0.038994								0	0	0	0.38166	1	26838	26838		1.4819	0	1				31057	3757	18020	18021	38188	38188					0.15404449342372573
NSIKQRKPKL	10	Unmodified	_NSIKQRKPKL_					0	0	0		ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1	ENSG00000134121|ENST00000256509|CHL1	ENSG00000134121|ENST00000256509|CHL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.369873046875	2	606.382771	1210.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.71	1	102.71	102.21	103.21	-0.0033646								0	0	0	0.38166	1	27343	27343		1.4819	0	1				31058	3757	18020	18021	38189	38189					0.15404449342372573
NSIKQRKPKL	10	Unmodified	_NSIKQRKPKL_					0	0	0		ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1	ENSG00000134121|ENST00000256509|CHL1	ENSG00000134121|ENST00000256509|CHL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3704223632812	2	606.382771	1210.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.84	1	102.84	102.34	103.34	-0.0033646								0	0	0	0.38166	1	27371	27371		1.4819	0	1				31059	3757	18020	18021	38190	38190					0.15404449342372573
NSKHRRAK	8	Unmodified	_NSKHRRAK_					0	0	0			REV__ENST00000438282.6_1_3:2613181-3030164:+|nuORF	REV__ENST00000438282.6_1_3:2613181-3030164:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.25445556640625	2	498.794124	995.573694	0.1506	7.5117E-05	2.7889	0.0013911	2.9395	0.0014662	498.79534856216577	15.624	0.34455	15.624	15.471	15.816	0					16	11	2	0	0	0	0.34367	1	1038	1038		4.3292	2.485	1	18814	+		31060	16247	18021	18022	38191	38191					0.07573038582893332
NSKIFYHKRG	10	Unmodified	_NSKIFYHKRG_					0	0	0			REV__nc|ENSG00000121005|Q9H336-2|CRISPLD1	REV__nc|ENSG00000121005|Q9H336-2|CRISPLD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.5458679199219	3	417.231523	1248.67274	0.0085451	3.5653E-06	-0.70202	-0.00029291	-0.69348	-0.00028934	417.2309565318818	19.126	0.33358	19.009	18.81	19.144	-0.11739					18	11	3	0	0	0	0.3213	1	2123	2123		1.9064	0.71303	1	39255	+		31061	15106	18022	18023	38192	38192					0.05835016757100675
NSKVNKAQE	9	Unmodified	_NSKVNKAQE_					0	0	0		nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A	nc|ENSG00000103978|Q8NBN3-3|TMEM87A	nc|ENSG00000103978|Q8NBN3-3|TMEM87A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3061828613281	2	509.269813	1016.52507	-0.17365	-8.8435E-05	0.21825	0.00011115	0.044598	2.2712E-05	509.2700357582328	12.368	0.29516	12.3	12.167	12.462	-0.06806					16	9	2	0	0	0	0.26031	1	152	152		3.5965	1.2938	1	35052			31062	1858	18023	18024	38193	38193					0.017470804324716482
NSLLKPQVLHS	11	Unmodified	_NSLLKPQVLHS_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.358642578125	2	618.358962	1234.70337	0.15364	9.5004E-05	-0.40372	-0.00024965	-0.25009	-0.00015464	618.3588326001435	91.131	0.50365	91.222	90.983	91.487	0.090668					82	36	3	0	0	0	0.46475	1	24153	24153		2.7352	0	1	1156200	+		31063	16252	18024	18025	38194	38194					0.0954075035151618
NSLSEPLNK	9	Unmodified	_NSLSEPLNK_					0	0	0			REV__ENST00000543678.1_1_15:65308722-65312598:-|nuORF	REV__ENST00000543678.1_1_15:65308722-65312598:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.30389404296875	2	501.266739	1000.51892	0.34152	0.00017119	0.077686	3.8941E-05	0.4192	0.00021013	501.266686417912	19.76	0.6115	19.644	19.341	19.952	-0.11592					28	20	2	0	0	0	0.25779	1	2323	2323		6.2058	0	1	41638	+		31064	14383	18025	18026	38195	38195					0.01868562200957058
NSLTTSESELN	11	Unmodified	_NSLTTSESELN_					0	0	0			REV__ENST00000480461.1_1_3:185649356-185649431:-|nuORF	REV__ENST00000480461.1_1_3:185649356-185649431:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.7622680664062	2	597.777864	1193.54118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.903	1	73.903	73.403	74.403	0								0	0	0	0.28921	1	18912	18912		21.59	6.3417	1		+		31065	21476	18026	18027	38196	38196					-0.047853029119323764
NSLTTSESELN	11	Unmodified	_NSLTTSESELN_					0	0	0			REV__ENST00000480461.1_1_3:185649356-185649431:-|nuORF	REV__ENST00000480461.1_1_3:185649356-185649431:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.7621459960938	2	597.777864	1193.54118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.064	1	74.064	73.564	74.564	0								0	0	0	0.22318	1	18960	18960		30.703	10.289	1		+		31066	21476	18026	18027	38197	38197					-0.047853029119323764
NSLVMFVII	9	Unmodified	_NSLVMFVII_					0	0	0		ENSG00000082556|ENST00000265572|OPRK1	ENSG00000082556|ENST00000265572|OPRK1	ENSG00000082556|ENST00000265572|OPRK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7794799804688	2	518.298996	1034.58344	0.33928	0.00017585	-1.3051	-0.00067643	-0.96582	-0.00050058	518.2983075170181	59.057	0.40539	59.057	58.891	59.297	0					24	14	2	0	0	0	0.23147	1	14418	14418		19.439	5.9311	1	425560			31067	1206	18027	18028	38198	38198					0.06753045753407605
NSNCGLLL	8	Unmodified	_NSNCGLLL_					0	0	0			REV__ENST00000276390.6_1_8:20078990-20079104:+|nuORF	REV__ENST00000276390.6_1_8:20078990-20079104:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.2252197265625	2	417.212921	832.411288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.872	1	70.847	70.347	71.347	-0.024872								0	0	0	0.35014	1	17972	17972		14.582	4.3983	1		+		31068	19695	18028	18029	38199	38199					-0.011621059341223372
NSPNLFQIHQ	10	Unmodified	_NSPNLFQIHQ_					0	0	0		ENSG00000181896|ENST00000592502|ZNF101;nc|ENSG00000181896|Q8IZC7-2|ZNF101	ENSG00000181896|ENST00000592502|ZNF101	ENSG00000181896|ENST00000592502|ZNF101	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.34814453125	2	599.304187	1196.59382	0.48248	0.00028915	-0.62993	-0.00037752	-0.14745	-8.8368E-05	599.3028139749475	69.084	0.66953	69.084	68.616	69.285	0					27	23	2	0	0	0	0.31958	1	17367	17367		5.2969	2.0156	1	77559			31069	7258	18029	18030	38200	38200					0.0033874473217565537
NSPNLFQIHQ	10	Unmodified	_NSPNLFQIHQ_					0	0	0		ENSG00000181896|ENST00000592502|ZNF101;nc|ENSG00000181896|Q8IZC7-2|ZNF101	ENSG00000181896|ENST00000592502|ZNF101	ENSG00000181896|ENST00000592502|ZNF101	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	599.304187	1196.59382	0.33477	0.00020063	-2.7075	-0.0016226	-2.3727	-0.001422	599.302202947946	69.267	0.42691	69.245	68.866	69.293	-0.022087	0.080281	-0.0013489	NaN	5.2969	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97953			31070	7258	18029	18030							0.0033874473217565537
NSPSRTFPMPL	11	Unmodified	_NSPSRTFPMPL_					0	0	0			REV__ENST00000573622.1_1_12:9795539-9795680:+|nuORF	REV__ENST00000573622.1_1_12:9795539-9795680:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.2470703125	3	416.213141	1245.61759	0.014874	6.1908E-06	0.10421	4.3373E-05	0.11908	4.9564E-05	416.2126280183662	44.307	0.80778	44.307	43.932	44.739	0					54	29	3	0	0	0	0.33175	1	9870	9870		4.1166	2.3744	1	596670	+		31071	22426	18030	18031	38201	38201					0.004608421743569124
NSQESELLVN	10	Unmodified	_NSQESELLVN_					0	0	0			REV__ENSG00000198146|ENST00000356321|ZNF770	REV__ENSG00000198146|ENST00000356321|ZNF770	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.2952270507812	2	566.777667	1131.54078	0.34326	0.00019455	-2.3746	-0.0013459	-2.0313	-0.0011513	566.7764694151404	42.163	0.73685	42.254	42.007	42.744	0.091362					33	25	2	0	0	0	0.31143	1	9219	9219		17.113	1.2657	1	277600	+		31072	18803	18031	18032	38202	38202					-0.019726778411268242
NSQPDVPIR	9	Unmodified	_NSQPDVPIR_					0	0	0			REV__ENSG00000243710|ENST00000372492|CFAP57	REV__ENSG00000243710|ENST00000372492|CFAP57	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7984008789062	2	513.272355	1024.53016	-0.069611	-3.5729E-05	0.2994	0.00015367	0.22979	0.00011795	513.272524033305	24.828	0.59475	24.796	24.426	25.021	-0.03141					28	19	2	0	0	0	0.25202	1	3809	3809		10.824	2.9138	1	64070	+		31073	19195	18032	18033	38203	38203					0.018873842950824837
NSSLSLHSK	9	Unmodified	_NSSLSLHSK_					0	0	0		ENST00000529131.5_1_9:72435824-72520897:+|nuORF	ENST00000529131.5_1_9:72435824-72520897:+|nuORF	ENST00000529131.5_1_9:72435824-72520897:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7594299316406	2	486.759081	971.503609	-0.046251	-2.2513E-05	-0.23468	-0.00011423	-0.28093	-0.00013675	486.75915554752646	18.635	1.222	18.577	18.199	19.421	-0.058172					165	42	6	0	0	0	0.32638	1	2224	2224		4.897	1.6157	1	2845500			31074	11595	18033	18034	38204	38204					0.016716954037519827
NSSTLIKHLRV	11	Unmodified	_NSSTLIKHLRV_					0	0	0		ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3782348632812	2	634.377686	1266.74082	-0.065239	-4.1386E-05	-0.10892	-6.9098E-05	-0.17416	-0.00011048	634.3778659788805	103.61	1.2562	103.61	103.51	104.77	0					365	174	4	0	0	0	0.47649	2	27717	27717;27778		1.1933	0	1	44719000			31075	7024	18034	18035	38205;38206	38205					0.11811841617122809
NSSTLIKHLRV	11	Unmodified	_NSSTLIKHLRV_					0	0	0		ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3788452148438	2	634.377686	1266.74082	-0.064232	-4.0747E-05	0.6311	0.00040036	0.56687	0.00035961	634.3787175144466	105.12	0.36694	105.12	104.92	105.29	0					74	53	2	0	0	0	0.46277	1	27869	27869		2.9952	0.49676	1	111810			31076	7024	18034	18035	38207	38207					0.11811841617122809
NSSTLIKHLRV	11	Unmodified	_NSSTLIKHLRV_					0	0	0		ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3787841796875	2	634.377686	1266.74082	-0.064354	-4.0825E-05	0.41198	0.00026135	0.34763	0.00022053	634.378710334211	105.78	0.30125	105.78	105.57	105.87	0					64	42	2	0	0	0	0.46277	1	27998	27998		2.9952	1.3426	1	102350			31077	7024	18034	18035	38208	38208					0.11811841617122809
NSSTLIKHLRV	11	Unmodified	_NSSTLIKHLRV_					0	0	0		ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.379638671875	2	634.377686	1266.74082	0.22787	0.00014455	-0.18084	-0.00011472	0.047024	2.9831E-05	634.3777797867066	103.27	1.9164	103.27	102.78	104.7	0.0082703					426	271	3	0	0	0	0.47649	1	27765	27765		1.1933	0	1	38547000			31078	7024	18034	18035	38209	38209					0.11811841617122809
NSSTLIKHLRV	11	Unmodified	_NSSTLIKHLRV_					0	0	0		ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3775634765625	2	634.377686	1266.74082	0.21996	0.00013954	-0.37645	-0.00023881	-0.15649	-9.9275E-05	634.3780513877844	105.12	0.11253	105.12	105.02	105.13	0.0018463					23	16	2	0	0	0	0.46277	1	27872	27872		2.9952	0.26005	1	147140			31079	7024	18034	18035	38210	38210					0.11811841617122809
NSSTLIKHLRV	11	Unmodified	_NSSTLIKHLRV_					0	0	0		ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3775024414062	2	634.377686	1266.74082	0.45841	0.00029081	-0.49697	-0.00031527	-0.038558	-2.446E-05	634.3779395780009	105.21	0.44441	105.22	104.97	105.41	0.0031738					96	66	2	0	0	0	0.46277	2	27925	27925;27948		2.9952	1.8019	1	190430			31080	7024	18034	18035	38211;38212	38211					0.11811841617122809
NSSTLIKHLRV	11	Unmodified	_NSSTLIKHLRV_					0	0	0		ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.8775634765625	2	634.377686	1266.74082	0.46085	0.00029236	-0.68289	-0.00043321	-0.22203	-0.00014085	634.3780412803046	105.8	0.50414	105.8	105.47	105.98	0.0031738					124	71	2	0	0	0	0.46277	3	27971	27971;27987;27990		2.9952	0.49676	1	170440			31081	7024	18034	18035	38213;38214;38215	38213					0.11811841617122809
NSSTLIKHLRV	11	Unmodified	_NSSTLIKHLRV_					0	0	0		ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	ENSG00000177932|ENST00000315475|ZNF354C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3792114257812	2	634.377686	1266.74082	0.45834	0.00029076	-0.078431	-4.9755E-05	0.37991	0.00024101	634.3783013347212	106.04	0.26144	106.04	105.94	106.2	0.0031738					61	38	2	0	0	0	0.46277	1	28087	28087		2.9952	0.26005	1	157480			31082	7024	18034	18035	38216	38216					0.11811841617122809
NSVAPTPPK	9	Unmodified	_NSVAPTPPK_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2420349121094	2	455.753267	909.491981	-0.17203	-7.8402E-05	-0.8012	-0.00036515	-0.97323	-0.00044355	455.75318673724473	14.564	0.46945	14.498	14.349	14.818	-0.066067					48	16	4	0	0	0	0.25843	1	730	730		5.7319	0	1	54914	+		31083	14279	18035	18036	38217	38217					0.03361498380411376
NSVVVPRDFDE	11	Unmodified	_NSVVVPRDFDE_					0	0	0			REV__ENST00000532451.1_1_11:121323091-121416136:+|nuORF	REV__ENST00000532451.1_1_11:121323091-121416136:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2643737792969	3	426.210453	1275.60953	-0.28424	-0.00012115	0.070697	3.0132E-05	-0.21354	-9.1013E-05	426.21098049106945	17.056	0.4336	16.939	16.746	17.18	-0.11739					35	15	4	0	0	0	0.33296	1	1542	1542		2.6312	0.72486	1	42844	+		31084	15875	18036	18037	38218	38218					-0.017250135414315082
NSWRIMQRK	9	Unmodified	_NSWRIMQRK_					0	0	0		ENST00000394767.2_1_4:105413137-105416015:-|nuORF	ENST00000394767.2_1_4:105413137-105416015:-|nuORF	ENST00000394767.2_1_4:105413137-105416015:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.78521728515625	3	406.888991	1217.64514	-0.25569	-0.00010404	-1.4481	-0.00058923	-1.7038	-0.00069327	406.88830348140465	27.402	0.6244	27.381	27.069	27.693	-0.021412					40	20	3	0	0	0	0.259	1	4563	4563		5.2969	1.4206	1	139720			31085	10076	18037	18038	38219	38219					0.04502790225228637
NSWRIMQRK	9	Unmodified	_NSWRIMQRK_					0	0	0		ENST00000394767.2_1_4:105413137-105416015:-|nuORF	ENST00000394767.2_1_4:105413137-105416015:-|nuORF	ENST00000394767.2_1_4:105413137-105416015:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	406.888991	1217.64514	-0.24449	-9.9481E-05	-1.6683	-0.00067883	-1.9128	-0.00077831	406.8881934229453	27.444	0.83774	27.444	26.925	27.763	0	0.02415	-1.5838E-05	NaN	5.2969	58	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147800			31086	10076	18037	18038							0.04502790225228637
NSWRIMQRK	9	Unmodified	_NSWRIMQRK_					0	0	0		ENST00000394767.2_1_4:105413137-105416015:-|nuORF	ENST00000394767.2_1_4:105413137-105416015:-|nuORF	ENST00000394767.2_1_4:105413137-105416015:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	406.888991	1217.64514	-0.20812	-8.4681E-05	-1.9797	-0.00080553	-2.1878	-0.00089021	406.88809783730414	27.447	0.82364	27.435	26.879	27.703	-0.011562	0.015237	-0.00039593	NaN	5.2969	58	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156950			31087	10076	18037	18038							0.04502790225228637
NTDKLKNV	8	Unmodified	_NTDKLKNV_					0	0	0		nc|ENSG997|Q9N2J8|HERV-H-ENH3	nc|ENSG997|Q9N2J8|HERV-H-ENH3	nc|ENSG997|Q9N2J8|HERV-H-ENH3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2642822265625	2	466.263999	930.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.006	1	89.005	88.505	89.505	-0.00080872								0	0	0	0.36336	1	23523	23523		8.5933	0.68312	1				31088	13024	18038	18039	38220	38220					0.04540883409151775
NTDLATLYV	9	Unmodified	_NTDLATLYV_					0	0	0			REV__ENSG00000196663|ENST00000359520|TECPR2	REV__ENSG00000196663|ENST00000359520|TECPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2640075683594	2	505.263665	1008.51278	0.45973	0.00023228	0.18802	9.4999E-05	0.64774	0.00032728	505.26371397991886	64.274	0.9443	64.367	64.066	65.01	0.09288					59	34	3	0	0	0	0.019896	1	15957	15957		64.236	1.6636	1	1901900	+		31089	18675	18039	18040	38221	38221					0.008860439694331035
NTEKLGIYAQA	11	Unmodified	_NTEKLGIYAQA_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.21502685546875	3	403.215427	1206.62445	-0.27619	-0.00011136	-0.63163	-0.00025468	-0.90782	-0.00036605	403.2151965598708	16.013	0.85655	15.95	15.638	16.495	-0.062534					54	29	3	0	0	0	0.36161	1	1158	1158		16.275	0.53592	1	563760	+		31090	18742	18040	18041	38222	38222					0.029404783265590595
NTFAVGKVK	9	Unmodified	_NTFAVGKVK_					0	0	0			REV__ENST00000547933.1_1_17:3593719-3599299:-|nuORF	REV__ENST00000547933.1_1_17:3593719-3599299:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.76202392578125	2	482.284734	962.554916	-0.13969	-6.7369E-05	-1.7035	-0.00082157	-1.8432	-0.00088894	482.2839525074327	12.96	0.27497	12.96	12.815	13.09	0					16	9	2	0	0	0	0.25706	1	267	267		6.7232	1.9672	1	27519	+		31091	13934	18041	18042	38223	38223					0.07214064168476853
NTGLQDTKD	9	Unmodified	_NTGLQDTKD_					0	0	0		ENST00000403662.7_2_22:37318079-37318241:+|nuORF	ENST00000403662.7_2_22:37318079-37318241:+|nuORF	ENST00000403662.7_2_22:37318079-37318241:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.25164794921875	2	496.238178	990.461803	0.1763	8.7485E-05	0.62295	0.00030913	0.79924	0.00039661	496.2386562210294	22.781	0.51367	22.781	22.533	23.047	0					22	17	3	0	0	0	0.33508	1	3296	3296		3.5965	0	1	47099			31092	10207	18042	18043	38224	38224					-0.033809050754143755
NTIFLRIPV	9	Unmodified	_NTIFLRIPV_					0	0	0			REV__nc|ENSG00000076555|O00763-3|ACACB	REV__nc|ENSG00000076555|O00763-3|ACACB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2931518554688	2	536.829309	1071.64407	0.47821	0.00025672	1.5501	0.00083212	2.0283	0.0010888	536.829657878986	68.116	0.39212	68.116	67.911	68.303	0					25	14	3	0	0	0	0.18936	1	17144	17144		26.268	3.5319	1	223240	+		31093	13831	18043	18044	38225	38225					0.11110899127970697
NTIFLRIPV	9	Unmodified	_NTIFLRIPV_					0	0	0			REV__nc|ENSG00000076555|O00763-3|ACACB	REV__nc|ENSG00000076555|O00763-3|ACACB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.29296875	2	536.829309	1071.64407	0.43144	0.00023161	1.7302	0.00092882	2.1616	0.0011604	536.8295577688594	67.989	0.61209	68.067	67.802	68.414	0.078041					36	21	3	0	0	0	0.18936	1	17057	17057		26.268	3.5319	1	219110	+		31094	13831	18043	18044	38226	38226					0.11110899127970697
NTIFLRIPV	9	Unmodified	_NTIFLRIPV_					0	0	0			REV__nc|ENSG00000076555|O00763-3|ACACB	REV__nc|ENSG00000076555|O00763-3|ACACB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2930297851562	2	536.829309	1071.64407	0.51407	0.00027597	0.55104	0.00029582	1.0651	0.00057178	536.8294990288261	68.09	0.47964	68.074	67.838	68.318	-0.016296					26	16	2	0	0	0	0.18936	1	17087	17087		26.268	3.5319	1	248380	+		31095	13831	18043	18044	38227	38227					0.11110899127970697
NTIISWIMW	9	Unmodified	_NTIISWIMW_					0	0	0		ENSG00000174358|ENST00000304460|SLC6A19	ENSG00000174358|ENST00000304460|SLC6A19	ENSG00000174358|ENST00000304460|SLC6A19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.2987670898438	2	582.299527	1162.5845	0.27601	0.00016072	-1.3098	-0.00076267	-1.0337	-0.00060195	582.2988277398578	19.698	0.49339	19.582	19.375	19.869	-0.11592					25	16	2	0	0	0	0.33508	1	2304	2304		3.5965	0.0094347	1	103020			31096	6789	18044	18045	38228	38228					0.009712601223100137
NTILFSMCR	9	Unmodified	_NTILFSMCR_					0	0	0		NLRP8|p.N923Kfs*2|1|0.22|ENSG00000179709|chr19:55976190-55976191|-/A|frameshift_variant;nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	NLRP8|p.N923Kfs*2|1|0.22|ENSG00000179709|chr19:55976190-55976191|-/A|frameshift_variant	NLRP8|p.N923Kfs*2|1|0.22|ENSG00000179709|chr19:55976190-55976191|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2799682617188	2	542.767537	1083.52052	0.48048	0.00026079	2.2426	0.0012172	2.7231	0.001478	542.7684540492515	67.74	0.5432	67.74	67.479	68.022	0					38	18	3	0	0	0	0.20881	1	17089	17089		16.149	0	1	599140			31097	7140	18045	18046	38229	38229					-0.01789843306301009
NTITPVVGK	9	Unmodified	_NTITPVVGK_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.74603271484375	2	464.776742	927.538931	0.17974	8.3539E-05	-0.28571	-0.00013279	-0.10597	-4.925E-05	464.77651201087195	29.368	1.072	29.368	28.729	29.801	0					56	38	3	0	0	0	0.1558	1	5257	5257		41.956	12.874	1	326220			31098	1640	18046	18047	38230	38230					0.07226357931574512
NTITPVVGK	9	Unmodified	_NTITPVVGK_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7767333984375	2	464.776742	927.538931	0.035496	1.6498E-05	0.063911	2.9704E-05	0.099407	4.6202E-05	464.7767303384853	29.283	0.57324	29.295	29.08	29.654	0.012266					42	19	3	0	0	0	0.15763	1	5256	5256		29.841	10.584	1	344290			31099	1640	18046	18047	38231	38231					0.07226357931574512
NTITPVVGK	9	Unmodified	_NTITPVVGK_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7459716796875	2	464.776742	927.538931	0.025559	1.1879E-05	-0.10095	-4.6918E-05	-0.07539	-3.5039E-05	464.77660664522233	29.29	0.65983	29.303	29.113	29.773	0.013474					46	22	3	0	0	0	0.18479	1	5230	5230		34.932	12.196	1	361680			31100	1640	18046	18047	38232	38232					0.07226357931574512
NTKWAATRWA	10	Unmodified	_NTKWAATRWA_					0	0	0		ENSG00000188846|ENST00000396203|RPL14;ENST00000481798.1_1_3:40499446-40503006:+|nuORF	ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8151245117188	2	602.814722	1203.61489	0.20374	0.00012282	0.33947	0.00020463	0.54321	0.00032745	602.8149248143347	15.978	0.83004	15.915	15.638	16.468	-0.062534					88	28	5	0	0	0	0.35231	1	1240	1240		12.241	12.241	1	1300200			31101	7780	18047	18048	38233	38233					0.021227548317028777
NTLDGYGIHPK	11	Unmodified	_NTLDGYGIHPK_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5717468261719	3	405.543655	1213.60914	-0.17895	-7.257E-05	-0.74991	-0.00030412	-0.92886	-0.00037669	405.5432345074835	33.039	0.44417	33.094	32.84	33.284	0.055309					27	15	2	0	0	0	0.32951	1	6330	6330		11.065	2.089	1	110640			31102	1207	18048	18049	38234	38234					0.01087611529374044
NTLGMFVF	8	Unmodified	_NTLGMFVF_					0	0	0			REV__ENSG00000182854|ENST00000332238|OR4F15	REV__ENSG00000182854|ENST00000332238|OR4F15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.74603271484375	2	464.733489	927.452425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.31	1	29.323	28.823	29.823	0.012266								0	0	0	0.34229	1	5229	5229		18.135	2.2878	1		+		31103	18221	18049	18050	38235	38235					-0.014203448946432218
NTLRGPGTKKK	11	Unmodified	_NTLRGPGTKKK_					0	0	0		ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	400.5803527832031	3	400.578811	1198.7146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.19	1	103.19	102.69	103.69	0								0	0	0	0.36839	1	27425	27425		3.5927	1.8504	1				31104	4523	18050	18051	38236	38236					0.12319572445653648
NTLRGPGTKKK	11	Unmodified	_NTLRGPGTKKK_					0	0	0		ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	400.580078125	3	400.578811	1198.7146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.13	1	103.14	102.64	103.64	0.0082703								0	0	0	0.34403	1	27420	27420		5.1984	1.0818	1				31105	4523	18050	18051	38237	38237					0.12319572445653648
NTLRGPGTKKK	11	Unmodified	_NTLRGPGTKKK_					0	0	0		ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	400.5807189941406	3	400.578811	1198.7146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.87	1	103.87	103.37	104.37	-0.0011139								0	0	0	0.34403	1	27613	27613		5.1984	0	1				31106	4523	18050	18051	38238	38238					0.12319572445653648
NTLVKISK	8	Unmodified	_NTLVKISK_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.25286865234375	2	451.78711	901.559667	0.27745	0.00012535	-0.36072	-0.00016297	-0.083265	-3.7618E-05	451.7868305508115	23.902	0.54315	23.863	23.592	24.135	-0.038927					27	18	2	0	0	0	0.34068	1	3510	3510		16.149	2.2431	1	112190			31107	3999	18051	18052	38239	38239					0.10494948311236385
NTLVRERKIYP	11	Unmodified	_NTLVRERKIYP_					0	0	0		nc|ENSG00000173320|Q9P2F5-2|STOX2;ENSG00000173320|ENST00000308497|STOX2	nc|ENSG00000173320|Q9P2F5-2|STOX2	nc|ENSG00000173320|Q9P2F5-2|STOX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.29937744140625	3	463.605137	1387.79358	0.22716	0.00010531	-0.50385	-0.00023359	-0.27669	-0.00012827	463.6049067490137	40.413	0.64948	40.506	40.123	40.773	0.09267					35	23	2	0	0	0	0.3325	1	8534	8534		4.1166	0.52395	1	185530			31108	6715	18052	18053	38240	38240					0.11519799679945208
NTLVRERKIYP	11	Unmodified	_NTLVRERKIYP_					0	0	0		nc|ENSG00000173320|Q9P2F5-2|STOX2;ENSG00000173320|ENST00000308497|STOX2	nc|ENSG00000173320|Q9P2F5-2|STOX2	nc|ENSG00000173320|Q9P2F5-2|STOX2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	463.605137	1387.79358	0.19649	9.1095E-05	-0.076196	-3.5325E-05	0.1203	5.5771E-05	463.93940564093674	40.56	0.51295	40.56	40.334	40.847	0	0.057266	0.00026706	NaN	4.1166	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295450			31109	6715	18052	18053							0.11519799679945208
NTLVRERKIYP	11	Unmodified	_NTLVRERKIYP_					0	0	0		nc|ENSG00000173320|Q9P2F5-2|STOX2;ENSG00000173320|ENST00000308497|STOX2	nc|ENSG00000173320|Q9P2F5-2|STOX2	nc|ENSG00000173320|Q9P2F5-2|STOX2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	463.605137	1387.79358	0.33497	0.00015529	-0.53412	-0.00024762	-0.19915	-9.2327E-05	463.60499210242307	40.342	0.52328	40.442	40.201	40.724	0.099407	-0.060862	-0.00036983	NaN	4.1166	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348400			31110	6715	18052	18053							0.11519799679945208
NTLYRWIV	8	Unmodified	_NTLYRWIV_					0	0	0			REV__ENST00000453177.2_1_9:22748031-22748136:+|nuORF	REV__ENST00000453177.2_1_9:22748031-22748136:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7964477539062	2	532.798009	1063.58147	0.053225	2.8358E-05	-2.2671	-0.0012079	-2.2139	-0.0011796	532.7969453333275	12.957	0.25899	12.89	12.763	13.022	-0.067496					13	8	2	0	0	0	0.46022	1	298	298		2.3027	0	1	38081	+		31111	21138	18053	18054	38241	38241					0.052217530597772566
NTLYRWIV	8	Unmodified	_NTLYRWIV_					0	0	0			REV__ENST00000453177.2_1_9:22748031-22748136:+|nuORF	REV__ENST00000453177.2_1_9:22748031-22748136:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	532.798009	1063.58147	0.14955	7.968E-05	-2.5918	-0.0013809	-2.4422	-0.0013012	532.7967860596289	12.921	0.18775	12.921	12.815	13.003	0	0.027831	-0.00023891	NaN	2.3027	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32392	+		31112	21138	18053	18054							0.052217530597772566
NTLYRWIV	8	Unmodified	_NTLYRWIV_					0	0	0			REV__ENST00000453177.2_1_9:22748031-22748136:+|nuORF	REV__ENST00000453177.2_1_9:22748031-22748136:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	532.798009	1063.58147	0.031962	1.7029E-05	-2.2915	-0.0012209	-2.2595	-0.0012039	532.7967311913948	12.969	0.22539	12.87	12.785	13.011	-0.099291	-0.023845	8.1074E-05	NaN	2.3027	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24611	+		31113	21138	18053	18054							0.052217530597772566
NTLYRWIV	8	Unmodified	_NTLYRWIV_					0	0	0			REV__ENST00000453177.2_1_9:22748031-22748136:+|nuORF	REV__ENST00000453177.2_1_9:22748031-22748136:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	532.798009	1063.58147	0.053225	2.8358E-05	-2.2671	-0.0012079	-2.2139	-0.0011796	532.7969453333275	12.957	0.25899	12.89	12.763	13.022	-0.067496	-0.003986	0.00010703	NaN	2.3027	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38081	+		31114	21138	18053	18054							0.052217530597772566
NTMNITISK	9	Oxidation (M)	_NTM(Oxidation (M))NITISK_		NTM(1)NITISK		NTM(110)NITISK	0	0	1		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2684326171875	2	519.268424	1036.5223	0.21917	0.00011381	0.29027	0.00015073	0.50944	0.00026454	519.2685083897103	24.908	0.8228	24.852	24.572	25.395	-0.055931					57	28	3	0	0	0	0.0022427	1	3903	3903		108.26	58.708	1	458600			31115	3405	18054	18055	38242	38242		429			0.005494889833016714
NTMNITISK	9	Oxidation (M)	_NTM(Oxidation (M))NITISK_		NTM(1)NITISK		NTM(92)NITISK	0	0	1		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2683715820312	2	519.268424	1036.5223	-0.0093334	-4.8465E-06	0.51241	0.00026608	0.50308	0.00026123	519.268670854449	24.911	0.88988	24.88	24.545	25.434	-0.031408					65	30	3	0	0	0	0.0042709	1	3876	3876		92.201	40.571	1	422260			31116	3405	18054	18055	38243	38243		429			0.005494889833016714
NTMNITISK	9	Oxidation (M)	_NTM(Oxidation (M))NITISK_					0	0	1		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	519.268424	1036.5223	0.37133	0.00019282	-0.19063	-9.899E-05	0.18069	9.3829E-05	519.2682476765076	24.852	0.75291	24.852	24.575	25.328	0	-0.009241	-0.0002	NaN	108.26	62	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	439950			31117	3405	18054	18055				429			0.005494889833016714
NTMQQFLQK	9	Oxidation (M)	_NTM(Oxidation (M))QQFLQK_		NTM(1)QQFLQK		NTM(270)QQFLQK	0	0	1		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.2872924804688	2	577.287148	1152.55974	-0.025772	-1.4878E-05	0.14712	8.4929E-05	0.12135	7.0051E-05	577.2873050522206	27.684	0.80067	27.684	27.38	28.181	0					95	27	6	0	0	0	4.957E-33	3	4742	4742;4795;4828		266.55	155.87	1	1958000			31118	963	18055	18056	38244;38245;38246	38244		118			-0.010434197510903687
NTMQQFLQK	9	Oxidation (M)	_NTM(Oxidation (M))QQFLQK_		NTM(1)QQFLQK		NTM(230)QQFLQK	0	0	1		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.287353515625	2	577.287148	1152.55974	0.01501	8.6649E-06	0.2844	0.00016418	0.29941	0.00017284	577.2872526240038	27.661	0.96747	27.639	27.349	28.316	-0.021412					90	33	4	0	0	0	8.5057E-24	2	4750	4702;4750		233.47	133.72	1	1999200			31119	963	18055	18056	38247;38248	38248		118			-0.010434197510903687
NTMQQFLQK	9	Oxidation (M)	_NTM(Oxidation (M))QQFLQK_		NTM(1)QQFLQK		NTM(250)QQFLQK	0	0	1		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.2872924804688	2	577.287148	1152.55974	-0.097946	-5.6543E-05	0.14742	8.5102E-05	0.049471	2.8559E-05	577.2873245069467	27.643	0.85904	27.631	27.344	28.203	-0.01156					99	29	6	0	0	0	1.2732000000000002E-25	2	4726	4682;4726		249.55	149.8	1	2142300			31120	963	18055	18056	38249;38250	38250		118			-0.010434197510903687
NTNLVRLIHQ	10	Unmodified	_NTNLVRLIHQ_					0	0	0			REV__ENST00000496813.5_1_6:33239896-33244045:+|nuORF	REV__ENST00000496813.5_1_6:33239896-33244045:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.21502685546875	3	403.235045	1206.6833	-0.3428	-0.00013823	-0.8141	-0.00032827	-1.1569	-0.0004665	403.23327616776584	15.537	1.6026	15.472	15.041	16.644	-0.064414					86	54	3	0	0	0	0.31597	1	1158	1158		12.175	4.2293	1	67397	+		31121	19134	18056	18057	38251	38251					0.08822999411563615
NTNTKKIKRY	10	Unmodified	_NTNTKKIKRY_					0	0	0			REV__ENSG00000105656|ENST00000262809|ELL	REV__ENSG00000105656|ENST00000262809|ELL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3690185546875	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.44	1	102.44	101.94	102.94	-0.0033646								0	0	0	0.38166	1	27288	27288		1.4819	0	1		+		31122	14475	18057	18058	38252	38252					0.10339555100085818
NTPERTEL	8	Unmodified	_NTPERTEL_					0	0	0			REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2597351074219	2	480.243264	958.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.018	1	69.018	68.518	69.518	0								0	0	0	0.32762	1	17419	17419		24.674	2.9272	1		+		31123	16723	18058	18059	38253	38253					-0.008922973501853448
NTPERTEL	8	Unmodified	_NTPERTEL_					0	0	0			REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2595520019531	2	480.243264	958.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.071	1	69.142	68.642	69.642	0.071938								0	0	0	0.34229	1	17431	17431		18.135	3.5533	1		+		31124	16723	18058	18059	38254	38254					-0.008922973501853448
NTPERTEL	8	Unmodified	_NTPERTEL_					0	0	0			REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.259521484375	2	480.243264	958.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.094	1	69.075	68.575	69.575	-0.019157								0	0	0	0.32762	1	17430	17430		24.674	6.5389	1		+		31125	16723	18058	18059	38255	38255					-0.008922973501853448
NTQKGIEMT	9	Unmodified	_NTQKGIEMT_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2539367675781	2	511.252774	1020.491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.05	1	117.03	116.53	117.53	-0.022781								0	0	0	0.264	1	30307	30307		1.8442	0	1				31126	6693	18059	18060	38256	38256					-0.018430840507903667
NTQPLQQA	8	Unmodified	_NTQPLQQA_					0	0	0		nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54;nc|ENSG00000189308|Q6MZP7-2|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.76104736328125	2	450.232699	898.450845	0.21828	9.8279E-05	-1.4898	-0.00067074	-1.2715	-0.00057246	450.2314252936069	23.422	0.30333	23.377	23.225	23.528	-0.044867					13	10	2	0	0	0	0.31088	1	3427	3427		21.747	0	1	21740			31127	7811	18060	18061	38257	38257					-0.0024426265905503897
NTQSSSEEARK	11	Unmodified	_NTQSSSEEARK_					0	0	0		ENSG00000151779|ENST00000281513|NBAS;nc|ENSG00000151779|A2RRP1-2|NBAS	ENSG00000151779|ENST00000281513|NBAS	ENSG00000151779|ENST00000281513|NBAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.211669921875	3	412.865346	1235.57421	-0.69567	-0.00028722	1.9905	0.0008218	1.2948	0.00053459	412.86592670997254	34.349	0.67512	34.349	34.164	34.839	0					25	23	2	0	0	0	0.42762	1	6749	6749		3.8459	0	1	69828			31128	4984	18061	18062	38258	38258					-0.03415676069244
NTRKEPAP	8	Unmodified	_NTRKEPAP_					0	0	0			REV__ENST00000508244.5_3_5:37169496-37169637:-|nuORF	REV__ENST00000508244.5_3_5:37169496-37169637:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.274658203125	2	456.748516	911.482479	0.026338	1.203E-05	0.24263	0.00011082	0.26897	0.00012285	456.7485010977232	21.98	1.3469	21.931	21.265	22.612	-0.049377					65	47	2	0	0	0	0.34039	1	2902	2902		15.847	1.9411	1	125230	+		31129	21772	18062	18063	38259	38259					0.02319730094905026
NTRQWWMPDTG	11	Unmodified	_NTRQWWMPDTG_					0	0	0		ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.74603271484375	3	464.543549	1390.60882	0.028706	1.3335E-05	0.13384	6.2173E-05	0.16254	7.5508E-05	464.8779467969616	29.141	0.64496	29.153	28.944	29.589	0.012266					33	22	2	0	0	0	0.33296	1	5229	5229		1.2148	0	1	139760			31130	4343	18063	18064	38260	38260					-0.07086131462119738
NTTHAMSIKIL	11	Unmodified	_NTTHAMSIKIL_					0	0	0		nc|ENSG00000133105|Q8WXD0-2|RXFP2;ENSG00000133105|ENST00000298386|RXFP2	nc|ENSG00000133105|Q8WXD0-2|RXFP2	nc|ENSG00000133105|Q8WXD0-2|RXFP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9083251953125	3	410.228791	1227.66454	-0.085413	-3.5039E-05	1.4292	0.00058628	1.3438	0.00055125	410.2294466206503	16.906	0.55225	16.792	16.532	17.084	-0.11434					28	19	2	0	0	0	0.33296	1	1425	1425		2.6312	0.19645	1	69222			31131	3694	18064	18065	38261	38261					0.05981701725499988
NTYGFPIIFK	10	Unmodified	_NTYGFPIIFK_					0	0	0		ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC	ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC	ENSG00000173599|ENST00000393960|PC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3267211914062	2	600.326599	1198.63865	0.49891	0.00029951	-0.35625	-0.00021387	0.14266	8.5641E-05	600.3262271898194	70.55	0.74871	70.55	70.24	70.989	0					78	26	4	0	0	0	8.7593E-06	3	17890	17843;17890;17934		151.48	118.69	1	1748200			31132	6735;12840	18065	18066	38262;38263;38264	38263					0.047271755454858067
NTYGFPIIFK	10	Unmodified	_NTYGFPIIFK_					0	0	0		ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC	ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC	ENSG00000173599|ENST00000393960|PC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.32666015625	2	600.326599	1198.63865	0.52749	0.00031667	-0.36186	-0.00021723	0.16563	9.9431E-05	600.3261551885903	70.501	0.71761	70.561	70.299	71.017	0.060783					73	25	4	0	0	0	8.7593E-06	3	17874	17829;17874;17919		151.48	115.35	1	1836100			31133	6735;12840	18065	18066	38265;38266;38267	38266					0.047271755454858067
NTYGFPIIFK	10	Unmodified	_NTYGFPIIFK_					0	0	0		ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC	ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC	ENSG00000173599|ENST00000393960|PC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3265991210938	2	600.326599	1198.63865	0.44538	0.00026738	-0.26177	-0.00015715	0.18362	0.00011023	600.3262607519915	70.627	0.7256	70.602	70.245	70.971	-0.024864					78	25	4	0	0	0	3.4983E-06	3	17899	17848;17899;17950		154.75	120.35	1	1624800			31134	6735;12840	18065	18066	38268;38269;38270	38269					0.047271755454858067
NVAELAKVF	9	Unmodified	_NVAELAKVF_					0	0	0			REV__ENSG00000116981|ENST00000235628|NT5C1A	REV__ENSG00000116981|ENST00000235628|NT5C1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.8030090332031	2	495.784567	989.554582	0.48634	0.00024112	0.015227	7.5494E-06	0.50157	0.00024867	495.7844955409376	68.62	0.43822	68.62	68.462	68.9	0					21	15	2	0	0	0	0.2322	1	17273	17273		14.838	0	1	240970	+		31135	14950	18066	18067	38271	38271					0.0593864444861083
NVAELAKVF	9	Unmodified	_NVAELAKVF_					0	0	0			REV__ENSG00000116981|ENST00000235628|NT5C1A	REV__ENSG00000116981|ENST00000235628|NT5C1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.80303955078125	2	495.784567	989.554582	0.40129	0.00019895	0.22216	0.00011014	0.62345	0.0003091	495.784491762599	68.582	0.29369	68.654	68.536	68.83	0.071938					14	10	2	0	0	0	0.24688	1	17252	17252		14.838	0.93222	1	167180	+		31136	14950	18066	18067	38272	38272					0.0593864444861083
NVAMRLEV	8	Unmodified	_NVAMRLEV_					0	0	0			REV__ENSG00000153574|ENST00000283646|RPIA	REV__ENSG00000153574|ENST00000283646|RPIA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7774658203125	2	466.25512	930.495686	0.013024	6.0727E-06	0.34631	0.00016147	0.35934	0.00016754	466.25497954009626	69.01	0.66216	69.01	68.736	69.398	0					35	23	2	0	0	0	0.33993	1	17535	17535		11.64	0	1	201540	+		31137	16630	18067	18068	38273	38273					0.027658448826400672
NVAMRLEV	8	Unmodified	_NVAMRLEV_					0	0	0			REV__ENSG00000153574|ENST00000283646|RPIA	REV__ENSG00000153574|ENST00000283646|RPIA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	466.25512	930.495686	0.14659	6.8348E-05	0.25538	0.00011907	0.40197	0.00018742	466.2549225113844	68.953	0.4797	69.025	68.758	69.237	0.071945	0.021073	-6.8574E-05	NaN	11.64	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256610	+		31138	16630	18067	18068							0.027658448826400672
NVAMRLEV	8	Unmodified	_NVAMRLEV_					0	0	0			REV__ENSG00000153574|ENST00000283646|RPIA	REV__ENSG00000153574|ENST00000283646|RPIA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	466.25512	930.495686	0.192	8.9519E-05	0.3741	0.00017443	0.5661	0.00026395	466.2549583300172	68.997	0.47566	68.977	68.766	69.242	-0.019157	-0.026684	4.2133E-05	NaN	11.64	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188990	+		31139	16630	18067	18068							0.027658448826400672
NVATRSPAP	9	Unmodified	_NVATRSPAP_					0	0	0			REV__ENST00000350777.6_1_11:119002278-119002611:+|nuORF	REV__ENST00000350777.6_1_11:119002278-119002611:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7485046386719	2	456.748516	911.482479	-0.067449	-3.0807E-05	0.061202	2.7954E-05	-0.006247	-2.8533E-06	456.74838891201534	19.115	2.0486	19.115	18.024	20.073	0					158	72	3	0	0	0	0.31763	1	2181	2181		6.2058	1.8765	1	118520	+		31140	20163	18068	18069	38274	38274					0.02319730094905026
NVATRSPAP	9	Unmodified	_NVATRSPAP_					0	0	0			REV__ENST00000350777.6_1_11:119002278-119002611:+|nuORF	REV__ENST00000350777.6_1_11:119002278-119002611:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	456.748516	911.482479	-0.067449	-3.0807E-05	0.061202	2.7954E-05	-0.006247	-2.8533E-06	456.74838891201534	19.115	2.0486	19.115	18.024	20.073	0	-0.027431	4.501E-05	NaN	6.2058	158	72	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118520	+		31141	20163	18068	18069							0.02319730094905026
NVATRSPAP	9	Unmodified	_NVATRSPAP_					0	0	0			REV__ENST00000350777.6_1_11:119002278-119002611:+|nuORF	REV__ENST00000350777.6_1_11:119002278-119002611:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	456.748516	911.482479	0.022276	1.0175E-05	-0.02364	-1.0798E-05	-0.0013641	-6.2303E-07	456.74836862321854	19.249	2.195	19.133	17.959	20.154	-0.11592	-0.0098119	-3.2493E-05	NaN	6.2058	154	76	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130040	+		31142	20163	18068	18069							0.02319730094905026
NVDDKSLTR	9	Unmodified	_NVDDKSLTR_					0	0	0			REV__ENST00000517557.5_1_8:97274268-97299434:+|nuORF	REV__ENST00000517557.5_1_8:97274268-97299434:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.313720703125	2	524.275095	1046.53564	0.26415	0.00013849	-1.4039	-0.00073605	-1.1398	-0.00059756	524.7763651168025	27.335	0.39467	27.314	27.069	27.464	-0.021412					22	13	3	0	0	0	0.24848	1	4655	4655		9.3831	0	1	93695	+		31143	16748	18069	18070	38275	38275					0.014230630868951266
NVDEFKKIYA	10	Unmodified	_NVDEFKKIYA_					0	0	0		ENSG00000121905|ENST00000373467|HPCA	ENSG00000121905|ENST00000373467|HPCA	ENSG00000121905|ENST00000373467|HPCA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2158203125	3	409.552039	1225.63429	0.11963	4.8995E-05	-0.88593	-0.00036283	-0.7663	-0.00031384	409.5513014465425	29.58	0.59311	29.58	29.324	29.917	0					32	20	2	0	0	0	0.31651	1	5334	5334		11.518	0.61892	1	74047			31144	3021	18070	18071	38276	38276					0.030496663319581785
NVDEFKKIYA	10	Unmodified	_NVDEFKKIYA_					0	0	0		ENSG00000121905|ENST00000373467|HPCA	ENSG00000121905|ENST00000373467|HPCA	ENSG00000121905|ENST00000373467|HPCA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	409.552039	1225.63429	0.123	5.0374E-05	-0.06493	-2.6592E-05	0.058069	2.3782E-05	409.55095764427506	29.471	0.41778	29.483	29.302	29.72	0.012266	-0.048304	0.00061005	NaN	11.518	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84376			31145	3021	18070	18071							0.030496663319581785
NVDGTTFI	8	Unmodified	_NVDGTTFI_					0	0	0			REV__nc|ENSG00000085491|Q6NUK1-2|SLC25A24	REV__nc|ENSG00000085491|Q6NUK1-2|SLC25A24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.2662658691406	2	433.71635	865.418148	-0.43818	-0.00019005	0.25927	0.00011245	-0.17891	-7.7598E-05	433.7164651862907	39.513	0.58913	39.513	39.242	39.831	0					46	21	3	0	0	0	0.34294	1	8261	8261		3.9444	1.3669	1	223020	+		31146	13961	18071	18072	38277	38277					-0.019944697818914392
NVDGTTFI	8	Unmodified	_NVDGTTFI_					0	0	0			REV__nc|ENSG00000085491|Q6NUK1-2|SLC25A24	REV__nc|ENSG00000085491|Q6NUK1-2|SLC25A24	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	433.71635	865.418148	-0.15893	-6.8931E-05	-0.22892	-9.9285E-05	-0.38785	-0.00016822	433.7162756915244	39.427	0.5269	39.52	39.251	39.777	0.09267	0.041817	-0.00023829	NaN	3.9444	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284760	+		31147	13961	18071	18072							-0.019944697818914392
NVDGTTFI	8	Unmodified	_NVDGTTFI_					0	0	0			REV__nc|ENSG00000085491|Q6NUK1-2|SLC25A24	REV__nc|ENSG00000085491|Q6NUK1-2|SLC25A24	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	433.71635	865.418148	-0.039997	-1.7348E-05	0.11693	5.0716E-05	0.076936	3.3369E-05	433.7163507104972	39.303	0.46893	39.402	39.236	39.705	0.099407	-0.076163	6.1713E-05	NaN	3.9444	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280120	+		31148	13961	18071	18072							-0.019944697818914392
NVEVEYFL	8	Unmodified	_NVEVEYFL_					0	0	0			REV__nc|ENSG00000131724|P78552-2|IL13RA1	REV__nc|ENSG00000131724|P78552-2|IL13RA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7714538574219	2	506.752933	1011.49131	-0.0039384	-1.9958E-06	0.22569	0.00011437	0.22175	0.00011237	506.7530122274544	13.941	0.37215	13.941	13.714	14.086	0					17	12	2	0	0	0	0.344	1	611	611		2.5775	0	1	40887	+		31149	15530	18072	18073	38278	38278					-0.01397341059282553
NVEVEYFL	8	Unmodified	_NVEVEYFL_					0	0	0			REV__nc|ENSG00000131724|P78552-2|IL13RA1	REV__nc|ENSG00000131724|P78552-2|IL13RA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	506.752933	1011.49131	-0.074162	-3.7582E-05	-0.11248	-5.6998E-05	-0.18664	-9.458E-05	506.7527958677955	14.012	0.28488	13.908	13.738	14.023	-0.10466	-0.016714	-0.00018737	NaN	2.5775	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56276	+		31150	15530	18072	18073							-0.01397341059282553
NVEVEYFL	8	Unmodified	_NVEVEYFL_					0	0	0			REV__nc|ENSG00000131724|P78552-2|IL13RA1	REV__nc|ENSG00000131724|P78552-2|IL13RA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.752933	1011.49131	-0.056887	-2.8828E-05	0.37792	0.00019151	0.32103	0.00016268	507.2543767329432	13.991	0.35021	13.925	13.747	14.098	-0.066068	0.00057986	0.00030965	NaN	2.5775	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34784	+		31151	15530	18072	18073							-0.01397341059282553
NVFAAQKK	8	Unmodified	_NVFAAQKK_					0	0	0		ENST00000393038.2_1_17:57784752-57784842:-|nuORF	ENST00000393038.2_1_17:57784752-57784842:-|nuORF	ENST00000393038.2_1_17:57784752-57784842:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.743896484375	2	453.263802	904.513051	-0.14327	-6.4941E-05	-2.1794	-0.00098783	-2.3227	-0.0010528	453.2625138274265	28.003	0.374	27.999	27.793	28.167	-0.0042572					17	12	2	0	0	0	0.34218	1	4828	4828		5.2307	0	1	58512			31152	10038	18073	18074	38279	38279					0.05697508479943281
NVGGLKQKLEQ	11	Unmodified	_NVGGLKQKLEQ_					0	0	0			REV__ENSG00000166813|ENST00000394412|KIF7	REV__ENSG00000166813|ENST00000394412|KIF7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2467041015625	3	405.234822	1212.68264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.627	1	17.567	17.067	18.067	-0.060429								0	0	0	0.36075	1	1686	1686		5.8681	0.82062	1		+		31153	17341	18074	18075	38280	38280					0.08480159971850298
NVGKPSNKVN	10	Unmodified	_NVGKPSNKVN_					0	0	0		nc|ENSG00000196263|Q9BX82-2|ZNF471	nc|ENSG00000196263|Q9BX82-2|ZNF471	nc|ENSG00000196263|Q9BX82-2|ZNF471	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.31982421875	2	528.793455	1055.57236	0.41598	0.00021997	3.6455	0.0019277	4.0615	0.0021477	528.7954197950236	27.124	0.42849	27.124	26.925	27.354	0					24	14	2	0	0	0	0.31581	1	4523	4523		11.495	2.1116	1	97082			31154	12893	18075	18076	38281	38281					0.04679359703482078
NVGRPLLLF	9	Unmodified	_NVGRPLLLF_					0	0	0		nc|ENSG00000290988|Q8N8C0|ZNF781	nc|ENSG00000290988|Q8N8C0|ZNF781	nc|ENSG00000290988|Q8N8C0|ZNF781	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.31884765625	2	514.816202	1027.61785	0.34397	0.00017708	-1.8217	-0.00093783	-1.4777	-0.00076075	514.8147994486816	70.247	1.1998	70.247	69.703	70.902	0					85	43	4	0	0	0	0.12846	1	17784	17784		34.102	1.797	1	2623600			31155	13012	18076	18077	38282	38282					0.10514629956514909
NVGRPLLLF	9	Unmodified	_NVGRPLLLF_					0	0	0		nc|ENSG00000290988|Q8N8C0|ZNF781	nc|ENSG00000290988|Q8N8C0|ZNF781	nc|ENSG00000290988|Q8N8C0|ZNF781	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.3190307617188	2	514.816202	1027.61785	0.23859	0.00012283	-1.6031	-0.00082529	-1.3645	-0.00070247	514.814951721817	70.327	1.2367	70.302	69.644	70.881	-0.024872					79	44	4	0	0	0	0.17611	1	17787	17787		34.102	8.7031	1	2293000			31156	13012	18076	18077	38283	38283					0.10514629956514909
NVHIELSFRF	10	Unmodified	_NVHIELSFRF_					0	0	0			REV__ENSG00000127870|ENST00000381588|RNF6	REV__ENSG00000127870|ENST00000381588|RNF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.9270324707031	3	421.227779	1260.66151	-0.17609	-7.4175E-05	-1.8179	-0.00076575	-1.994	-0.00083992	421.2280564423417	35.558	0.55424	35.558	35.276	35.83	0					38	19	3	0	0	0	0.31942	1	7063	7063		6.1918	1.4759	1	657260	+		31157	15353	18077	18078	38284	38284					0.04160194662995309
NVHVKMGK	8	Unmodified	_NVHVKMGK_					0	0	0			REV__ENSG00000139182|ENST00000266546|CLSTN3	REV__ENSG00000139182|ENST00000266546|CLSTN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2744445800781	2	456.75783	911.501106	0.33697	0.00015391	1.1155	0.00050951	1.4525	0.00066342	456.7584256864844	20.942	0.16799	20.889	20.779	20.947	-0.052912					7	5	2	0	0	0	0.34247	1	2681	2681		8.5933	3.3626	1	50885	+		31158	15971	18078	18079	38285	38285					0.04181568465116925
NVIEQKIS	8	Unmodified	_NVIEQKIS_					0	0	0			REV__ENSG00000164463|ENST00000296953|CREBRF	REV__ENSG00000164463|ENST00000296953|CREBRF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7774963378906	2	465.766374	929.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.515	1	69.581	69.081	70.081	0.066048								0	0	0	0.35163	1	17565	17565		13.906	3.8321	1		+		31159	17159	18079	18080	38286	38286					0.05061767551910634
NVILDKQLF	9	Unmodified	_NVILDKQLF_					0	0	0			REV__ENST00000397174.6_2_1:41493379-41493838:-|nuORF	REV__ENST00000397174.6_2_1:41493379-41493838:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3179931640625	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.29	1	115.27	114.77	115.77	-0.020988								0	0	0	0.25499	1	29901	29901		4.756	1.1595	1		+		31160	20667	18080	18081	38287	38287					0.08222889028479585
NVILDKQLF	9	Unmodified	_NVILDKQLF_					0	0	0			REV__ENST00000397174.6_2_1:41493379-41493838:-|nuORF	REV__ENST00000397174.6_2_1:41493379-41493838:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3173217773438	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.72	1	117.7	117.2	118.2	-0.024147								0	0	0	0.25499	1	30459	30459		4.756	1.1595	1		+		31161	20667	18080	18081	38288	38288					0.08222889028479585
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8823852539062	2	641.881793	1281.74903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.408	1	94.408	93.908	94.908	0								0	0	0	0.38126	1	25178	25178		1.1933	0	1				31162	3611	18081	18082	38289	38289					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8831176757812	2	641.881793	1281.74903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.739	1	96.739	96.239	97.239	0								0	0	0	0.37501	1	25856	25856		2.7352	1.5419	1				31163	3611	18081	18082	38290	38290					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8848266601562	2	641.881793	1281.74903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.775	1	96.775	96.275	97.275	0								0	0	0	0.37501	1	25867	25867		2.7352	1.0826	1				31164	3611	18081	18082	38291	38291					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8834228515625	2	641.881793	1281.74903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.09	1	101.09	100.59	101.59	0								0	0	0	0.38126	1	26968	26968		1.1933	0.12188	1				31165	3611	18081	18082	38292	38292					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8833618164062	2	641.881793	1281.74903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.78	1	101.78	101.28	102.28	0								0	0	0	0.37501	1	27130	27130		2.7352	1.4057	1				31166	3611	18081	18082	38293	38293					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.882080078125	2	641.881793	1281.74903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.9	1	101.9	101.4	102.4	0								0	0	0	0.38126	1	27155	27155		1.1933	0.735	1				31167	3611	18081	18082	38294	38294					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8819580078125	2	641.881793	1281.74903	0.48071	0.00030856	0.85144	0.00054652	1.3321	0.00085508	641.8824539350746	91.286	1.2832	91.377	91.143	92.426	0.090668					129	90	2	0	0	0	0.47649	3	24213	24213;24259;24477		1.1933	0.66858	1	204630			31168	3611	18081	18082	38295;38296;38297	38295					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.88134765625	2	641.881793	1281.74903	0.3939	0.00025284	0.91122	0.0005849	1.3051	0.00083773	641.8821386228421	94.232	1.0121	94.319	94.111	95.123	0.086678					144	83	2	0	0	0	0.42346	1	25288	25288		8.1555	8.1555	1	155330			31169	3611	18081	18082	38298	38298					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.882568359375	2	641.881793	1281.74903	0.36271	0.00023282	0.9566	0.00061402	1.3193	0.00084684	641.8822011881289	95.596	0.67054	95.673	95.261	95.932	0.077408					98	59	2	0	0	0	0.46475	2	25542	25542;25605		2.7352	2.7352	1	132910			31170	3611	18081	18082	38299;38300	38299					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8826293945312	2	641.881793	1281.74903	0.32115	0.00020614	1.118	0.00071764	1.4392	0.00092378	641.8824133288683	96.97	0.37371	97.041	96.801	97.175	0.070465					63	34	2	0	0	0	0.47649	1	25918	25918		1.1933	0.735	1	108470			31171	3611	18081	18082	38301	38301					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.882080078125	2	641.881793	1281.74903	0.2561	0.00016439	1.2944	0.00083086	1.5505	0.00099525	641.8825814378343	101	0.25816	101.03	100.92	101.18	0.027214					54	36	2	0	0	0	0.47649	1	26960	26960		1.1933	0.66858	1	120220			31172	3611	18081	18082	38302	38302					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8833618164062	2	641.881793	1281.74903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.366	1	92.455	91.955	92.955	0.089195								0	0	0	0.38126	1	24558	24558		1.1933	0	1				31173	3611	18081	18082	38303	38303					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8827514648438	2	641.881793	1281.74903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.665	1	92.754	92.254	93.254	0.089195								0	0	0	0.37501	1	24651	24651		2.7352	0	1				31174	3611	18081	18082	38304	38304					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8826293945312	2	641.881793	1281.74903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.015	1	94.102	93.602	94.602	0.08667								0	0	0	0.37501	1	25060	25060		2.7352	0	1				31175	3611	18081	18082	38305	38305					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8819580078125	2	641.881793	1281.74903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.62	1	100.65	100.15	101.15	0.038994								0	0	0	0.38126	1	26875	26875		1.1933	0.12188	1				31176	3611	18081	18082	38306	38306					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8829345703125	2	641.881793	1281.74903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.49	1	101.51	101.01	102.01	0.027206								0	0	0	0.38126	1	27068	27068		1.1933	0.79263	1				31177	3611	18081	18082	38307	38307					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8828735351562	2	641.881793	1281.74903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.73	1	101.76	101.26	102.26	0.027206								0	0	0	0.38126	1	27126	27126		1.1933	0.79263	1				31178	3611	18081	18082	38308	38308					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8824462890625	2	641.881793	1281.74903	0.63609	0.00040829	0.56141	0.00036036	1.1975	0.00076865	641.8824013892053	91.359	0.592	91.359	91.193	91.785	0.00046539					72	39	3	0	0	0	0.44828	1	24248	24248		4.897	3.4151	1	278010			31179	3611	18081	18082	38309	38309					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8822631835938	2	641.881793	1281.74903	0.56708	0.000364	0.58535	0.00037573	1.1524	0.00073972	641.8818305239422	94.612	0.49771	94.61	94.559	95.057	-0.0020142					74	42	2	0	0	0	0.47649	1	25269	25269		1.1933	0.79263	1	151090			31180	3611	18081	18082	38310	38310					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8109130859375	2	641.881793	1281.74903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.832	1	96.827	96.327	97.327	-0.0055466								0	0	0	0.38126	1	25905	25905		1.1933	0.23107	1				31181	3611	18081	18082	38311	38311					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8811645507812	2	641.881793	1281.74903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.879	1	96.873	96.373	97.373	-0.0055466								0	0	0	0.37501	1	25919	25919		2.7352	1.0826	1				31182	3611	18081	18082	38312	38312					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8823852539062	2	641.881793	1281.74903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.84	1	101.83	101.33	102.33	-0.0054703								0	0	0	0.37501	1	27173	27173		2.7352	1.2533	1				31183	3611	18081	18082	38313	38313					0.11942833377111128
NVIQRRGRAGR	11	Unmodified	_NVIQRRGRAGR_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	641.881793	1281.74903	0.38626	0.00024793	0.98567	0.00063268	1.3719	0.00088062	641.8824653088278	91.252	0.096977	91.252	91.224	91.32	0	-0.077198	0.00028507	NaN	4.897	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195430			31184	3611	18081	18082							0.11942833377111128
NVKLLIFV	8	Unmodified	_NVKLLIFV_					0	0	0		ENST00000301067.11_1_12:49414036-49414432:-|nuORF	ENST00000301067.11_1_12:49414036-49414432:-|nuORF	ENST00000301067.11_1_12:49414036-49414432:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.2994079589844	2	473.310221	944.605889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.53	1	101.56	101.06	102.06	0.027206								0	0	0	0.37724	1	27079	27079		2.3027	0	1				31185	9224	18082	18083	38314	38314					0.1313701321331564
NVKLVLVSVP	10	Unmodified	_NVKLVLVSVP_					0	0	0			REV__ENSG00000065060|ENST00000192788|BLTP3A	REV__ENSG00000065060|ENST00000192788|BLTP3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.79931640625	2	534.344792	1066.67503	0.63966	0.0003418	0.45536	0.00024332	1.095	0.00058512	534.3449538587761	49.356	0.40702	49.356	49.135	49.542	0					18	14	2	0	0	0	0.31358	1	11337	11337		13.906	0	1	130610	+		31186	13656	18083	18084	38315	38315					0.1443605244223818
NVLDIMVTK	9	Oxidation (M)	_NVLDIM(Oxidation (M))VTK_		NVLDIM(1)VTK		NVLDIM(96)VTK	0	0	1		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7889404296875	2	524.788992	1047.56343	0.58017	0.00030446	-0.12768	-6.7007E-05	0.45248	0.00023746	524.7888068535581	46.707	0.68227	46.707	46.43	47.112	0					54	23	4	0	0	0	0.0037869	2	10512	10512;10560		96.034	58.06	1	2414700			31187	1468	18084	18085	38316;38317	38316		182			0.041552500227680866
NVLDIMVTK	9	Oxidation (M)	_NVLDIM(Oxidation (M))VTK_		NVLDIM(1)VTK		NVLDIM(120)VTK	0	0	1		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7892456054688	2	524.788992	1047.56343	0.64027	0.00033601	-0.19697	-0.00010337	0.4433	0.00023264	524.7887444410462	46.609	1.0441	46.662	46.417	47.461	0.052574					71	38	3	0	0	0	0.001604	2	10546	10496;10546		115.06	73.219	1	2876200			31188	1468	18084	18085	38318;38319	38319		182			0.041552500227680866
NVLDIMVTK	9	Oxidation (M)	_NVLDIM(Oxidation (M))VTK_		NVLDIM(1)VTK		NVLDIM(140)VTK	0	0	1		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7890014648438	2	524.788992	1047.56343	0.53527	0.00028091	-0.26105	-0.00013699	0.27423	0.00014391	524.7887713186944	46.625	0.94717	46.68	46.413	47.36	0.054371					80	33	5	0	0	0	0.00013162	2	10501	10501;10544		135.72	93.879	1	2496200			31189	1468	18084	18085	38320;38321	38320		182			0.041552500227680866
NVLEINKR	8	Unmodified	_NVLEINKR_					0	0	0		nc|ENSG00000132535|P78352-3|DLG4;ENSG00000132535|ENST00000399506|DLG4;nc|ENSG00000132535|P78352-2|DLG4	nc|ENSG00000132535|P78352-3|DLG4	nc|ENSG00000132535|P78352-3|DLG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.67388916015625	2	493.293091	984.571629	0.16739	8.257E-05	0.48277	0.00023815	0.65016	0.00032072	493.2931723195562	19.204	0.693	19.204	18.738	19.431	0					47	24	2	0	0	0	0.34353	1	2043	2043		2.0598	0	1	102290			31190	3646	18085	18086	38322	38322					0.07872565054435654
NVLFLMGW	8	Unmodified	_NVLFLMGW_					0	0	0			REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.257080078125	2	490.257131	978.499709	0.16645	8.1601E-05	0.34341	0.00016836	0.50986	0.00024996	490.2567324482569	94.314	1.122	94.314	93.943	95.065	0					265	98	3	0	0	0	0.34319	1	25165	25165		5.7604	0.52976	1	613740	+		31191	15304	18086	18087	38323	38323					0.009599343763625257
NVLGKLSP	8	Unmodified	_NVLGKLSP_					0	0	0			REV__ENSG00000185009|ENST00000355264|AP3M1	REV__ENSG00000185009|ENST00000355264|AP3M1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.9065856933594	2	414.252903	826.491253	0.19389	8.0321E-05	0.47769	0.00019788	0.67158	0.0002782	414.25312234156587	40.507	0.63617	40.507	40.104	40.74	0					32	22	2	0	0	0	0.31934	1	8690	8690		18.135	1.1927	1	134630	+		31192	18350	18087	18088	38324	38324					0.07106703731381003
NVLHIRTIPG	10	Unmodified	_NVLHIRTIPG_					0	0	0		nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9;nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.334716796875	2	560.33529	1118.65603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.2	1	100.2	99.698	100.7	0								0	0	0	0.37739	1	26784	26784		3.2813	0	1				31193	3096	18088	18089	38325	38325					0.10144515871184012
NVLKVRCGP	9	Unmodified	_NVLKVRCGP_					0	0	0			REV__ENSG00000103740|ENST00000258873|ACSBG1	REV__ENSG00000103740|ENST00000258873|ACSBG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8033752441406	2	493.284211	984.55387	0.37325	0.00018412	-2.4355	-0.0012014	-2.0623	-0.0010173	493.2829382395262	43.815	0.33909	43.899	43.71	44.049	0.083992					16	12	2	0	0	0	0.19839	1	9596	9596		28.487	9.0478	1	181250	+		31194	14384	18089	18090	38326	38326					0.060975265279239466
NVLKVRCGP	9	Unmodified	_NVLKVRCGP_					0	0	0			REV__ENSG00000103740|ENST00000258873|ACSBG1	REV__ENSG00000103740|ENST00000258873|ACSBG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.284211	984.55387	0.33384	0.00016468	-2.219	-0.0010946	-1.8852	-0.00092993	493.283219107128	44.087	0.34803	44.087	43.932	44.28	0	0.093631	9.6507E-05	NaN	28.487	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239880	+		31195	14384	18089	18090							0.060975265279239466
NVLLHRFY	8	Unmodified	_NVLLHRFY_					0	0	0			REV__ENST00000556748.5_1_14:58666901-58681958:+|nuORF	REV__ENST00000556748.5_1_14:58666901-58681958:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3178100585938	2	531.298176	1060.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.528	1	94.528	94.028	95.028	0								0	0	0	0.37664	1	25214	25214		2.5775	0	1		+		31196	15542	18090	18091	38327	38327					0.05393172779668021
NVLPRNLN	8	Unmodified	_NVLPRNLN_					0	0	0		ENST00000538886.5_1_17:73233291-73233537:-|nuORF	ENST00000538886.5_1_17:73233291-73233537:-|nuORF	ENST00000538886.5_1_17:73233291-73233537:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.27227783203125	2	470.272158	938.529764	0.11128	5.2334E-05	0.19073	8.9696E-05	0.30202	0.00014203	470.27219163285827	82.091	1.4972	82.091	81.504	83.001	0					133	56	4	0	0	0	0.44389	1	21454	21454		7.9102	0.62092	1	3749300			31197	11704	18091	18092	38328	38328					0.058040093658974
NVLPSRRTNLL	11	Unmodified	_NVLPSRRTNLL_					0	0	0		DCST2|p.L548P|1|0.27|ENSG00000163354|chr1:155024571-155024571|A/G|missense_variant	DCST2|p.L548P|1|0.27|ENSG00000163354|chr1:155024571-155024571|A/G|missense_variant	DCST2|p.L548P|1|0.27|ENSG00000163354|chr1:155024571-155024571|A/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8822021484375	2	641.883136	1281.75172	0.33589	0.0002156	-0.9035	-0.00057994	-0.56761	-0.00036434	641.882430388857	96.394	0.58043	96.472	96.248	96.828	0.077415					94	58	2	0	0	0	0.47742	1	25836	25836		1.0715	0.67075	1	179320			31198	258	18092	18093	38329	38329					0.12211243991441734
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3431396484375	2	589.343646	1176.67274	0.062049	3.6568E-05	-0.50741	-0.00029904	-0.44536	-0.00026247	589.3433082742267	97.484	0.85527	97.484	97.135	97.991	0					153	89	2	0	0	0	0.40106	1	25994	25994		3.2813	0	1	132520	+		31199	13958	18093	18094	38330	38330					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3436279296875	2	589.343646	1176.67274	-0.0022917	-1.3506E-06	-0.68236	-0.00040214	-0.68465	-0.00040349	589.3431732276924	98.692	0.73123	98.692	98.416	99.147	0					141	84	2	0	0	0	0.40106	3	26332	26332;26370;26407		3.2813	1.6287	1	167710	+		31200	13958	18093	18094	38331;38332;38333	38331					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.34326171875	2	589.343646	1176.67274	-0.021824	-1.2862E-05	-0.55083	-0.00032463	-0.57265	-0.00033749	589.3428676647607	106.11	0.16245	106.11	105.98	106.15	0					36	22	2	0	0	0	0.40106	1	28064	28064		3.2813	0.28607	1	110150	+		31201	13958	18093	18094	38334	38334					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3429565429688	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.677	1	94.677	94.177	95.177	0								0	0	0	0.37739	1	25257	25257		3.2813	0	1		+		31202	13958	18093	18094	38335	38335					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3435668945312	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.104	1	95.104	94.604	95.604	0								0	0	0	0.37739	1	25384	25384		3.2813	0	1		+		31203	13958	18093	18094	38336	38336					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.343017578125	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.62	1	111.62	111.12	112.12	0								0	0	0	0.38166	1	29023	29023		1.4819	0.79152	1		+		31204	13958	18093	18094	38337	38337					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3424682617188	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.86	1	111.86	111.36	112.36	0								0	0	0	0.37739	1	29085	29085		3.2813	1.7994	1		+		31205	13958	18093	18094	38338	38338					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3442993164062	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.97	1	111.97	111.47	112.47	0								0	0	0	0.38166	1	29114	29114		1.4819	0.8804	1		+		31206	13958	18093	18094	38339	38339					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.342041015625	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.69	1	112.69	112.19	113.19	0								0	0	0	0.38166	1	29283	29283		1.4819	0	1		+		31207	13958	18093	18094	38340	38340					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3436279296875	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.58	1	113.58	113.08	114.08	0								0	0	0	0.38166	1	29499	29499		1.4819	0.95714	1		+		31208	13958	18093	18094	38341	38341					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3418579101562	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.84	1	114.84	114.34	115.34	0								0	0	0	0.38166	1	29780	29780		1.4819	0.95714	1		+		31209	13958	18093	18094	38342	38342					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.344970703125	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.21	1	115.21	114.71	115.71	0								0	0	0	0.38166	1	29863	29863		1.4819	0.8804	1		+		31210	13958	18093	18094	38343	38343					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.34326171875	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.43	1	115.43	114.93	115.93	0								0	0	0	0.38166	1	29916	29916		1.4819	0.15237	1		+		31211	13958	18093	18094	38344	38344					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3434448242188	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.1	1	116.1	115.6	116.6	0								0	0	0	0.38166	1	30068	30068		1.4819	0	1		+		31212	13958	18093	18094	38345	38345					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3441772460938	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.92	1	116.92	116.42	117.42	0								0	0	0	0.38166	1	30255	30255		1.4819	0.15237	1		+		31213	13958	18093	18094	38346	38346					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3428955078125	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.9	1	118.9	118.4	119.4	0								0	0	0	0.38166	1	30701	30701		1.4819	0.28856	1		+		31214	13958	18093	18094	38347	38347					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3433837890625	2	589.343646	1176.67274	0.18207	0.0001073	-0.6354	-0.00037447	-0.45332	-0.00026716	589.3431832244532	97.296	0.57165	97.366	97.088	97.66	0.070465					88	60	2	0	0	0	0.40106	1	26015	26015		3.2813	0.78282	1	134170	+		31215	13958	18093	18094	38348	38348					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3433227539062	2	589.343646	1176.67274	0.12833	7.5628E-05	-0.61867	-0.00036461	-0.49034	-0.00028898	589.3431854569972	99.422	0.81824	99.473	98.832	99.65	0.050888					149	109	2	0	0	0	0.40106	1	26612	26612		3.2813	1.7994	1	152550	+		31216	13958	18093	18094	38349	38349					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3435668945312	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.765	1	97.827	97.327	98.327	0.061516								0	0	0	0.37739	1	26162	26162		3.2813	0.54611	1		+		31217	13958	18093	18094	38350	38350					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.34423828125	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.87	1	112.85	112.35	113.35	-0.017303								0	0	0	0.38166	1	29351	29351		1.4819	0.28856	1		+		31218	13958	18093	18094	38351	38351					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3457641601562	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.01	1	112.99	112.49	113.49	-0.017303								0	0	0	0.38166	1	29383	29383		1.4819	1.0236	1		+		31219	13958	18093	18094	38352	38352					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3428344726562	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.63	1	113.61	113.11	114.11	-0.017303								0	0	0	0.38166	1	29533	29533		1.4819	0.15237	1		+		31220	13958	18093	18094	38353	38353					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3412475585938	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.73	1	113.72	113.22	114.22	-0.017303								0	0	0	0.37739	1	29556	29556		3.2813	1.7994	1		+		31221	13958	18093	18094	38354	38354					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3412475585938	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.89	1	113.87	113.37	114.37	-0.019096								0	0	0	0.37739	1	29592	29592		3.2813	1.7994	1		+		31222	13958	18093	18094	38355	38355					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.342041015625	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.06	1	114.05	113.55	114.55	-0.019096								0	0	0	0.38166	1	29632	29632		1.4819	0.95714	1		+		31223	13958	18093	18094	38356	38356					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3425903320312	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.21	1	114.19	113.69	114.69	-0.019096								0	0	0	0.38166	1	29666	29666		1.4819	0.8804	1		+		31224	13958	18093	18094	38357	38357					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3435668945312	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.69	1	114.67	114.17	115.17	-0.019096								0	0	0	0.38166	1	29767	29767		1.4819	0.28856	1		+		31225	13958	18093	18094	38358	38358					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3416748046875	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.49	1	115.47	114.97	115.97	-0.020988								0	0	0	0.38166	1	29948	29948		1.4819	0.28856	1		+		31226	13958	18093	18094	38359	38359					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.343505859375	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.06	1	118.04	117.54	118.54	-0.024147								0	0	0	0.38166	1	30535	30535		1.4819	0.79152	1		+		31227	13958	18093	18094	38360	38360					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3418579101562	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.81	1	118.78	118.28	119.28	-0.024147								0	0	0	0.38166	1	30694	30694		1.4819	0.95714	1		+		31228	13958	18093	18094	38361	38361					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3438720703125	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.98	1	118.96	118.46	119.46	-0.024147								0	0	0	0.38166	1	30731	30731		1.4819	0.28856	1		+		31229	13958	18093	18094	38362	38362					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3423461914062	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.41	1	119.38	118.88	119.88	-0.024361								0	0	0	0.38166	1	30826	30826		1.4819	0	1		+		31230	13958	18093	18094	38363	38363					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3414306640625	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.65	1	119.63	119.13	120.13	-0.024361								0	0	0	0.38166	1	30882	30882		1.4819	1.0236	1		+		31231	13958	18093	18094	38364	38364					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.343505859375	2	589.343646	1176.67274	0.38128	0.00022471	-0.79684	-0.00046961	-0.41556	-0.00024491	589.3432116322725	96.957	1.2457	96.952	96.744	97.99	-0.0055466					169	129	2	0	0	0	0.40106	1	26174	26174		3.2813	1.7994	1	176000	+		31232	13958	18093	18094	38365	38365					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3421020507812	2	589.343646	1176.67274	0.31854	0.00018773	-0.21847	-0.00012875	0.10007	5.8975E-05	589.3432787476333	111.78	1.0147	111.79	111.64	112.65	0.0131					170	122	2	0	0	0	0.40106	2	29102	29082;29102		3.2813	0.8804	1	104090	+		31233	13958	18093	18094	38366;38367	38367					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3429565429688	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.661	1	80.634	80.134	81.134	-0.026825								0	0	0	0.37739	1	20957	20957		3.2813	0	1		+		31234	13958	18093	18094	38368	38368					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3434448242188	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.02	1	113.03	112.53	113.53	0.014824								0	0	0	0.37739	1	29408	29408		3.2813	0	1		+		31235	13958	18093	18094	38369	38369					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3416748046875	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.07	1	113.09	112.59	113.59	0.014824								0	0	0	0.37739	1	29423	29423		3.2813	0.54611	1		+		31236	13958	18093	18094	38370	38370					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.341796875	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.42	1	113.44	112.94	113.94	0.014824								0	0	0	0.37739	1	29510	29510		3.2813	0	1		+		31237	13958	18093	18094	38371	38371					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3418579101562	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.55	1	113.56	113.06	114.06	0.014824								0	0	0	0.38166	1	29540	29540		1.4819	0	1		+		31238	13958	18093	18094	38372	38372					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3414916992188	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.69	1	113.7	113.2	114.2	0.014824								0	0	0	0.38166	1	29578	29578		1.4819	0.68827	1		+		31239	13958	18093	18094	38373	38373					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3433227539062	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.08	1	114.1	113.6	114.6	0.016708								0	0	0	0.38166	1	29674	29674		1.4819	1.0236	1		+		31240	13958	18093	18094	38374	38374					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3421020507812	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.47	1	115.49	114.99	115.99	0.018738								0	0	0	0.38166	1	29990	29990		1.4819	0.15237	1		+		31241	13958	18093	18094	38375	38375					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.343994140625	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.93	1	115.95	115.45	116.45	0.018738								0	0	0	0.38166	1	30097	30097		1.4819	0.28856	1		+		31242	13958	18093	18094	38376	38376					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3421630859375	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.06	1	116.08	115.58	116.58	0.020988								0	0	0	0.38166	1	30123	30123		1.4819	0.15237	1		+		31243	13958	18093	18094	38377	38377					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.341552734375	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.56	1	116.58	116.08	117.08	0.020988								0	0	0	0.38166	1	30243	30243		1.4819	0.8804	1		+		31244	13958	18093	18094	38378	38378					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3429565429688	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.86	1	116.88	116.38	117.38	0.020988								0	0	0	0.38166	1	30311	30311		1.4819	0.95714	1		+		31245	13958	18093	18094	38379	38379					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3410034179688	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.95	1	116.97	116.47	117.47	0.020988								0	0	0	0.38166	1	30330	30330		1.4819	0.8804	1		+		31246	13958	18093	18094	38380	38380					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3419799804688	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.25	1	117.27	116.77	117.77	0.023476								0	0	0	0.38166	1	30400	30400		1.4819	0.95714	1		+		31247	13958	18093	18094	38381	38381					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.34375	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.25	1	117.28	116.78	117.78	0.023476								0	0	0	0.38166	1	30402	30402		1.4819	0.95714	1		+		31248	13958	18093	18094	38382	38382					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3421020507812	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.83	1	117.85	117.35	118.35	0.023476								0	0	0	0.38166	1	30532	30532		1.4819	0	1		+		31249	13958	18093	18094	38383	38383					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.34375	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.95	1	117.97	117.47	118.47	0.023476								0	0	0	0.38166	1	30560	30560		1.4819	0.95714	1		+		31250	13958	18093	18094	38384	38384					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3432006835938	2	589.343646	1176.67274	0.33935	0.00019999	-1.219	-0.00071841	-0.87965	-0.00051842	589.3428663650509	98.562	0.25877	98.555	98.46	98.719	-0.0068207					34	27	2	0	0	0	0.32054	1	26404	26404		3.2813	0.78282	1	144860	+		31251	13958	18093	18094	38385	38385					0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	589.343646	1176.67274	-0.021824	-1.2862E-05	-0.55083	-0.00032463	-0.57265	-0.00033749	589.3428676647607	106.11	0.16245	106.11	105.98	106.15	0	-0.084221	0.00041048	NaN	3.2813	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110150	+		31252	13958	18093	18094							0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	589.343646	1176.67274	0.12581	7.4145E-05	-1.1337	-0.00066814	-1.0079	-0.00059399	589.3425333551521	106.22	0.26073	106.22	106.06	106.33	-0.0027847	0.026271	-0.00027654	NaN	3.2813	55	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121630	+		31253	13958	18093	18094							0.09147016757151505
NVLQRHNLAL	10	Unmodified	_NVLQRHNLAL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	589.343646	1176.67274	0.31891	0.00018795	-1.3701	-0.00080749	-1.0512	-0.00061954	589.3419510109394	106.25	0.083496	106.25	106.23	106.31	0.0050507	0.05795	-0.00055524	NaN	3.2813	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141570	+		31254	13958	18093	18094							0.09147016757151505
NVLTLIAFP	9	Unmodified	_NVLTLIAFP_					0	0	0			REV__ENSG00000141934|ENST00000434325|PLPP2	REV__ENSG00000141934|ENST00000434325|PLPP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7872619628906	2	494.29731	986.580068	0.7631	0.0003772	-0.080682	-3.9881E-05	0.68242	0.00033732	494.29736881431745	55.827	0.20516	55.898	55.727	55.932	0.070889					10	7	2	0	0	0	0.23147	1	13319	13319		19.439	12.15	1	175200	+		31255	16095	18094	18095	38386	38386					0.08624118971033568
NVLTLSLRSS	10	Unmodified	_NVLTLSLRSS_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3170776367188	2	545.316763	1088.61897	0.44923	0.00024497	-0.11532	-6.2886E-05	0.33391	0.00018209	545.3167475035995	80.336	3.7431	80.336	79.338	83.081	0					624	150	6	0	0	0	0.37133	1	21230	21230		8.7454	8.7454	1	16346000			31256	4833	18095	18096	38387	38387					0.07820799534761136
NVLVICVPT	9	Unmodified	_NVLVICVPT_					0	0	0		ENSG00000017483|ENST00000620913|SLC38A5;nc|ENSG00000017483|Q8WUX1-2|SLC38A5	ENSG00000017483|ENST00000620913|SLC38A5	ENSG00000017483|ENST00000620913|SLC38A5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2636413574219	2	479.275521	956.536489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.19	1	112.2	111.7	112.7	0.0131								0	0	0	0.264	1	29204	29204		1.8442	0	1				31257	489	18096	18097	38388	38388					0.05648186202256511
NVLVMANTV	9	Unmodified	_NVLVMANTV_					0	0	0			REV__ENST00000534701.1_1_11:71149825-71152361:-|nuORF	REV__ENST00000534701.1_1_11:71149825-71152361:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7714538574219	2	480.762778	959.511002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.335	1	40.428	39.928	40.928	0.09267								0	0	0	0.19013	1	8593	8593		25.399	1.3787	1		+		31258	17744	18097	18098	38389	38389					0.029627116798337738
NVNLEYQVKI	10	Unmodified	_NVNLEYQVKI_					0	0	0		nc|ENSG00000091181|Q01344-3|IL5RA;nc|ENSG00000091181|Q01344-2|IL5RA;nc|ENSG00000091181|Q01344-4|IL5RA;ENSG00000091181|ENST00000446632|IL5RA;nc|ENSG00000091181|Q01344-5|IL5RA	nc|ENSG00000091181|Q01344-3|IL5RA	nc|ENSG00000091181|Q01344-3|IL5RA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.3375244140625	2	610.337695	1218.66084	0.3797	0.00023174	-0.44218	-0.00026988	-0.062481	-3.8135E-05	610.3373749115354	51.306	0.47651	51.353	51.118	51.595	0.046577					40	17	3	0	0	0	0.28877	1	11964	11964		31.268	6.3868	1	652930			31259	1400	18098	18099	38390	38390					0.06025355223300721
NVNLEYQVKI	10	Unmodified	_NVNLEYQVKI_					0	0	0		nc|ENSG00000091181|Q01344-3|IL5RA;nc|ENSG00000091181|Q01344-2|IL5RA;nc|ENSG00000091181|Q01344-4|IL5RA;ENSG00000091181|ENST00000446632|IL5RA;nc|ENSG00000091181|Q01344-5|IL5RA	nc|ENSG00000091181|Q01344-3|IL5RA	nc|ENSG00000091181|Q01344-3|IL5RA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	610.337695	1218.66084	0.3587	0.00021893	-0.033778	-2.0616E-05	0.32492	0.00019831	610.3375984701058	51.388	0.44303	51.397	51.169	51.612	0.0095634	0.039346	0.00037489	NaN	31.268	43	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	522590			31260	1400	18098	18099							0.06025355223300721
NVNVNKPP	8	Unmodified	_NVNVNKPP_					0	0	0			REV__ENST00000357156.6_1_20:33128465-33128741:+|nuORF	REV__ENST00000357156.6_1_20:33128465-33128741:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.5736999511719	2	441.245609	880.476666	-0.15366	-6.7801E-05	1.5128	0.00066753	1.3592	0.00059973	441.24587064358684	14.403	0.22604	14.403	14.335	14.561	0					11	7	2	0	0	0	0.34319	1	753	753		5.7604	0	1	11287	+		31261	20210	18099	18100	38391	38391					0.031646315832290384
NVNVNKPP	8	Unmodified	_NVNVNKPP_					0	0	0			REV__ENST00000357156.6_1_20:33128465-33128741:+|nuORF	REV__ENST00000357156.6_1_20:33128465-33128741:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	441.245609	880.476666	-0.18861	-8.3222E-05	3.4495	0.0015221	3.2609	0.0014388	441.24739182883724	14.525	0.51326	14.42	14.079	14.592	-0.10466	0.0087009	0.0010929	NaN	5.7604	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13248	+		31262	20210	18099	18100							0.031646315832290384
NVPATALNEL	10	Unmodified	_NVPATALNEL_					0	0	0			REV__ENSG00000023572|ENST00000367439|GLRX2	REV__ENSG00000023572|ENST00000367439|GLRX2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2684326171875	2	521.282389	1040.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.242	1	37.242	36.742	37.742	0								0	0	0	0.35216	1	7649	7649		13.906	0.39817	1		+		31263	13472	18100	18101	38392	38392					0.031571352350511006
NVPNTSLLV	9	Unmodified	_NVPNTSLLV_					0	0	0		nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	nc|ENSG00000167491|Q86YP4-2|GATAD2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.77392578125	2	478.7742	955.533846	0.36864	0.0001765	-0.52685	-0.00025224	-0.1582	-7.5743E-05	478.77400106367907	63.404	0.49382	63.395	63.165	63.659	-0.0085526					29	17	2	0	0	0	0.26612	1	15725	15725		13.906	0	1	305250			31264	6180	18101	18102	38393	38393					0.0543005406894963
NVPPTREIL	9	Unmodified	_NVPPTREIL_					0	0	0		ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.3234252929688	2	519.800749	1037.58694	0.3834	0.00019929	-1.1786	-0.00061263	-0.79519	-0.00041334	520.3004365873412	70.286	0.14388	70.264	70.188	70.332	-0.022087					6	4	2	0	0	0	0.23784	1	17789	17789		19.257	11.968	1	66177			31265	4144	18102	18103	38394	38394					0.06965431851631365
NVQWRQVM	8	Unmodified	_NVQWRQVM_					0	0	0			REV__ENSG00000196652|ENST00000326775|ZKSCAN5	REV__ENSG00000196652|ENST00000326775|ZKSCAN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2988891601562	2	530.771468	1059.52838	0.16031	8.509E-05	-1.4724	-0.00078152	-1.3121	-0.00069643	530.7705962464817	13.173	0.30702	13.173	13.058	13.365	0					16	10	2	0	0	0	0.34319	1	335	335		5.7604	0	1	55242	+		31266	18672	18103	18104	38395	38395					0.0010005200549585425
NVRFTGVRVF	10	Unmodified	_NVRFTGVRVF_					0	0	0		nc|ENSG00000128923|Q8NBR6-2|MINDY2;ENSG00000128923|ENST00000559228|MINDY2	nc|ENSG00000128923|Q8NBR6-2|MINDY2	nc|ENSG00000128923|Q8NBR6-2|MINDY2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.856689453125	2	597.840739	1193.66693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.184	1	87.272	86.772	87.772	0.08709								0	0	0	0.34209	1	22971	22971		18.146	9.9908	1				31267	3401	18104	18105	38396	38396					0.07783918245468158
NVRIATTAL	9	Unmodified	_NVRIATTAL_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5;ENST00000476492.1_1_1:31215096-31230592:-|nuORF	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.787841796875	2	479.787641	957.56073	0.32392	0.00015541	0.14356	6.8877E-05	0.46748	0.00022429	479.7876093439764	40.59	1.1969	40.59	40.334	41.531	0					114	43	4	0	0	0	0.0079761	1	8641	8641		82.529	36.508	1	4828100			31268	5577	18105	18106	38397	38397					0.0802516268013278
NVRIATTAL	9	Unmodified	_NVRIATTAL_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5;ENST00000476492.1_1_1:31215096-31230592:-|nuORF	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7879333496094	2	479.787641	957.56073	0.41269	0.000198	0.046758	2.2434E-05	0.45944	0.00022044	479.7875734080644	40.495	1.2001	40.588	40.313	41.513	0.09267					110	44	4	0	0	0	0.012386	1	8605	8605		75.761	20.987	1	4971300			31269	5577	18105	18106	38398	38398					0.0802516268013278
NVRIATTAL	9	Unmodified	_NVRIATTAL_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5;ENST00000476492.1_1_1:31215096-31230592:-|nuORF	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.78790283203125	2	479.787641	957.56073	0.35881	0.00017215	0.037322	1.7907E-05	0.39613	0.00019006	479.78759277432886	40.409	1.1405	40.508	40.26	41.4	0.099407					110	41	4	0	0	0	0.0079761	1	8582	8582		82.529	27.756	1	5433700			31270	5577	18105	18106	38399	38399					0.0802516268013278
NVRPPNTAL	9	Unmodified	_NVRPPNTAL_					0	0	0		ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.29034423828125	2	491.277441	980.540328	0.40883	0.00020085	0.028773	1.4135E-05	0.4376	0.00021498	491.27752959088696	32.842	0.53546	32.842	32.556	33.091	0					40	18	3	0	0	0	0.21538	1	6297	6297		26.268	9.1552	1	108940			31271	7049	18106	18107	38400	38400					0.049279920203161964
NVRPPNTAL	9	Unmodified	_NVRPPNTAL_					0	0	0		ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.29010009765625	2	491.277441	980.540328	0.356	0.00017489	-0.392	-0.00019258	-0.036003	-1.7687E-05	491.27743981425067	32.675	0.87521	32.729	32.167	33.042	0.054371					91	31	4	0	0	0	0.16853	1	6236	6236		38.176	9.094	1	221180			31272	7049	18106	18107	38401	38401					0.049279920203161964
NVRPVFLAL	9	Unmodified	_NVRPVFLAL_					0	0	0			REV__ENSG00000140675|ENST00000330498|SLC5A2	REV__ENSG00000140675|ENST00000330498|SLC5A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2583618164062	2	514.816202	1027.61785	0.20709	0.00010661	0.001883	9.6939E-07	0.20898	0.00010758	514.8159230903057	69.293	0.45742	69.359	69.151	69.609	0.06604					26	15	3	0	0	0	0.25066	1	17535	17535		11.64	0	1	287010	+		31273	16046	18107	18108	38402	38402					0.10514629956514909
NVRPVFLAL	9	Unmodified	_NVRPVFLAL_					0	0	0			REV__ENSG00000140675|ENST00000330498|SLC5A2	REV__ENSG00000140675|ENST00000330498|SLC5A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	514.816202	1027.61785	0.16454	8.4709E-05	0.11484	5.9124E-05	0.27939	0.00014383	514.8158965016587	69.325	0.4949	69.325	69.123	69.618	0	-0.029812	-0.00014726	NaN	11.64	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190600	+		31274	16046	18107	18108							0.10514629956514909
NVRTRDNK	8	Unmodified	_NVRTRDNK_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3;ENST00000539112.5_1_15:102194787-102197157:-|nuORF	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3038330078125	2	501.775597	1001.53664	0.25774	0.00012933	-3.6259	-0.0018194	-3.3681	-0.00169	501.77361385425905	19.796	0.27812	19.796	19.655	19.933	0					15	9	2	0	0	0	0.34353	1	2318	2318		4.756	0	1	20438			31275	7532	18108	18109	38403	38403					0.035933222464564096
NVSILIQGQ	9	Unmodified	_NVSILIQGQ_					0	0	0			REV__ENST00000582655.5_1_17:27237161-27237842:-|nuORF	REV__ENST00000582655.5_1_17:27237161-27237842:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2787170410156	2	486.279649	970.544745	-1.3474	-0.00065523	-0.90121	-0.00043824	-2.2486	-0.0010935	486.2791253950499	34.763	0.68421	34.838	34.604	35.288	0.075306					62	24	4	0	0	0	0.19083	1	6978	6978		24.991	3.454	1	1109300	+		31276	22492	18109	18110	38404	38404					0.058294564432458174
NVSKCGKR	8	Unmodified	_NVSKCGKR_					0	0	0			REV__ENST00000594254.1_1_19:21565732-21566473:+|nuORF	REV__ENST00000594254.1_1_19:21565732-21566473:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.2314147949219	2	446.245086	890.47562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.138	1	89.137	88.637	89.637	-0.00080872								0	0	0	0.37724	1	23562	23562		2.3027	0	1		+		31277	17726	18110	18111	38405	38405					0.026000939426921832
NVSTQATMFP	10	Unmodified	_NVSTQATMFP_					0	0	0			REV__ENSG00000178229|ENST00000321545|ZNF543	REV__ENSG00000178229|ENST00000321545|ZNF543	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8161010742188	2	548.260599	1094.50665	0.49857	0.00027335	-2.4734	-0.0013561	-1.9748	-0.0010827	548.2596546605394	75.845	0.97585	75.813	75.342	76.318	-0.031487					51	35	2	0	0	0	0.30093	1	19564	19564		21.537	3.3906	1	511050	+		31278	18024	18111	18112	38406	38406					-0.03682797533747362
NVVEIRWF	8	Unmodified	_NVVEIRWF_					0	0	0			REV__ENSG00000009830|ENST00000261534|POMT2	REV__ENSG00000009830|ENST00000261534|POMT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8193969726562	2	531.790184	1061.56581	0.33556	0.00017845	0.72063	0.00038322	1.0562	0.00056167	531.790588797917	47.146	0.53097	47.198	46.984	47.515	0.052574					32	19	2	0	0	0	0.34046	1	10721	10721		9.3474	0	1	461500	+		31279	13409	18112	18113	38407	38407					0.03749466542740265
NVVLEDSGF	9	Unmodified	_NVVLEDSGF_					0	0	0		HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;HMCN1|p.A5600Gfs*20|1|0.2|ENSG00000143341|chr1:186189767-186189768|-/G|frameshift_variant;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7982482910156	2	490.24019	978.465826	0.39231	0.00019233	1.5281	0.00074915	1.9204	0.00094148	490.24072990452873	23.683	0.57446	23.644	23.364	23.939	-0.038927					30	19	2	0	0	0	0.25066	1	3550	3550		11.64	3.047	1	46036			31280	4502	18113	18114	38408	38408					-0.024268155817139814
NVVNSTLAEV	10	Unmodified	_NVVNSTLAEV_					0	0	0		nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7953491210938	2	523.279846	1044.54514	0.29193	0.00015276	-0.49611	-0.0002596	-0.20418	-0.00010684	523.2796821567484	28.853	0.46551	28.853	28.661	29.127	0.00046921					28	16	2	0	0	0	0.3001	1	5099	5099		20.415	1.1575	1	171370			31281	1397	18114	18115	38409	38409					0.02464831372435583
NVVVSFGRYM	10	Unmodified	_NVVVSFGRYM_					0	0	0			REV__ENST00000301453.7_1_11:63765020-63765272:+|nuORF	REV__ENST00000301453.7_1_11:63765020-63765272:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8305053710938	2	586.300059	1170.58556	0.45059	0.00026418	1.3386	0.00078484	1.7892	0.001049	586.300665390098	30.068	0.36156	30.068	29.833	30.194	0					20	12	2	0	0	0	0.31889	1	5476	5476		6.2058	0.9089	1	150610	+		31282	19822	18115	18116	38410	38410					0.007094744912137685
NVYEVVNPK	9	Unmodified	_NVYEVVNPK_					0	0	0		ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.284423828125	2	531.284931	1060.55531	-0.33841	-0.00017979	0.072245	3.8383E-05	-0.26616	-0.00014141	531.2848839912647	35.178	0.63078	35.178	34.917	35.547	0					53	22	3	0	0	0	0.043711	1	6991	6991		55.235	37.088	1	846460			31283	4206	18116	18117	38411	38411					0.027454390976799914
NVYEVVNPK	9	Unmodified	_NVYEVVNPK_					0	0	0		ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.28466796875	2	531.284931	1060.55531	-0.52838	-0.00028072	0.36597	0.00019444	-0.16241	-8.6285E-05	531.2850733909821	35.123	0.72139	35.199	34.788	35.509	0.075306					54	25	3	0	0	0	0.0032746	1	6969	6969		100.09	77.354	1	919860			31284	4206	18116	18117	38412	38412					0.027454390976799914
NVYEVVNPK	9	Unmodified	_NVYEVVNPK_					0	0	0		ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	ENSG00000139117|ENST00000331366|CPNE8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.284423828125	2	531.284931	1060.55531	-0.49006	-0.00026036	0.23955	0.00012727	-0.25051	-0.00013309	531.2849714480642	35.063	0.65966	35.14	34.807	35.467	0.077377					59	23	3	0	0	0	0.043711	1	6945	6945		55.235	41.329	1	804590			31285	4206	18116	18117	38413	38413					0.027454390976799914
NVYSVFSQN	9	Unmodified	_NVYSVFSQN_					0	0	0			REV__LTR9D_dup356|chr8:133364552-133365002:+|4.041593351427075|0.0741289277495715|5.77|531.0|8|2|sense	REV__LTR9D_dup356|chr8:133364552-133365002:+|4.041593351427075|0.0741289277495715|5.77|531.0|8|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3548583984375	2	529.251089	1056.48762	0.88214	0.00046687	-1.8824	-0.00099628	-1.0003	-0.00052941	529.2502032839528	77.734	0.108	77.734	77.663	77.771	0					5	3	2	0	0	0	0.25706	1	20058	20058		3.5965	0	1	58710	+		31286	22851	18117	18118	38414	38414					-0.038360108331289666
NWKKRLESR	9	Unmodified	_NWKKRLESR_					0	0	0			REV__ENST00000566154.1_1_15:43643891-43644140:+|nuORF	REV__ENST00000566154.1_1_15:43643891-43644140:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.9034729003906	3	406.235156	1215.68364	-0.14895	-6.0508E-05	0.081551	3.3129E-05	-0.067398	-2.7379E-05	406.5695328101251	25.15	0.42926	25.15	24.93	25.359	0					25	14	2	0	0	0	0.25919	1	4025	4025		5.7834	0.73591	1	93166	+		31287	17478	18118	18119	38415	38415					0.08442419131392853
NWQRRARL	8	Unmodified	_NWQRRARL_					0	0	0		ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7645874023438	2	550.315223	1098.61589	0.24736	0.00013613	1.7846	0.00098212	2.032	0.0011182	550.316864280612	18.403	0.087473	18.403	18.363	18.451	0					4	2	2	0	0	0	0.34408	1	1933	1933		2.3027	0	1	14769			31288	5841	18119	18120	38416	38416					0.07053013991276202
NWQRRARL	8	Unmodified	_NWQRRARL_					0	0	0		ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7643432617188	2	550.315223	1098.61589	0.2613	0.0001438	-0.92789	-0.00051063	-0.66659	-0.00036683	550.3146047982511	18.211	0.4004	18.093	17.957	18.358	-0.11739					28	13	3	0	0	0	0.34218	1	1944	1944		9.3474	0.75416	1	61030			31289	5841	18119	18120	38417	38417					0.07053013991276202
NWQRRARL	8	Unmodified	_NWQRRARL_					0	0	0		ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.802734375	2	550.315223	1098.61589	0.14147	7.7854E-05	-0.73413	-0.000404	-0.59265	-0.00032615	550.3148022111305	18.281	0.56577	18.223	18.004	18.57	-0.058174					28	19	2	0	0	0	0.34337	1	1918	1918		5.2307	0	1	77242			31290	5841	18119	18120	38418	38418					0.07053013991276202
NWQTQVLEEE	10	Unmodified	_NWQTQVLEEE_					0	0	0		ENSG00000135426|ENST00000449076|TESPA1	ENSG00000135426|ENST00000449076|TESPA1	ENSG00000135426|ENST00000449076|TESPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.2951049804688	2	638.296224	1274.5779	0.39809	0.0002541	-1.2933	-0.00082551	-0.89521	-0.00057141	638.2948740083104	39.037	0.90463	39.129	38.786	39.69	0.09267					60	32	3	0	0	0	0.36015	1	8253	8253		10.8	0	1	563810			31291	3874	18120	18121	38419	38419					-0.04841006295373518
NWREKLAYK	9	Unmodified	_NWREKLAYK_					0	0	0			REV__ENSG00000124713|ENST00000372808|GNMT	REV__ENSG00000124713|ENST00000372808|GNMT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.33349609375	2	604.332747	1206.65094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.57	1	102.57	102.07	103.07	0								0	0	0	0.26265	1	27284	27284		3.9444	1.8846	1		+		31292	15246	18121	18122	38420	38420					0.055882120085243514
NWTQAPPL	8	Unmodified	_NWTQAPPL_					0	0	0			REV__ENST00000433411.7_1_17:18062284-18062894:+|nuORF	REV__ENST00000433411.7_1_17:18062284-18062894:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.2550048828125	2	463.74016	925.465767	0.097792	4.535E-05	0.029852	1.3844E-05	0.12764	5.9194E-05	463.74011338008546	53.182	0.90145	53.182	52.875	53.776	0					47	33	2	0	0	0	0.28861	1	12615	12615		32.117	0	1	386530	+		31293	20966	18122	18123	38421	38421					5.229208954915521E-05
NWVFSLANY	9	Unmodified	_NWVFSLANY_					0	0	0			REV__nc|ENSG00000158055|Q8TE85-4|GRHL3	REV__nc|ENSG00000158055|Q8TE85-4|GRHL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7847290039062	2	557.271824	1112.5291	0.33454	0.00018643	-2.6118	-0.0014555	-2.2773	-0.0012691	557.2708703024425	53.291	0.29019	53.281	53.166	53.456	-0.0096054					15	10	2	0	0	0	0.25323	1	12581	12581		6.2058	1.8765	1	180940	+		31294	16801	18123	18124	38422	38422					-0.02266830073813253
NYAAALETF	9	Unmodified	_NYAAALETF_					0	0	0		ENST00000379514.2_1_9:33503785-33510678:-|nuORF;ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENST00000379514.2_1_9:33503785-33510678:-|nuORF	ENST00000379514.2_1_9:33503785-33510678:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2430725097656	2	500.242732	998.470912	0.43633	0.00021827	0.22503	0.00011257	0.66136	0.00033084	500.2427916333549	64.76	1.6708	64.76	64.454	66.124	0					157	60	5	0	0	0	3.2167E-17	3	16112	16066;16112;16162		222.91	155.56	1	5749000			31295	5958	18124	18125	38423;38424;38425	38424					-0.028385117190964593
NYAAALETF	9	Unmodified	_NYAAALETF_					0	0	0		ENST00000379514.2_1_9:33503785-33510678:-|nuORF;ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENST00000379514.2_1_9:33503785-33510678:-|nuORF	ENST00000379514.2_1_9:33503785-33510678:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2430725097656	2	500.242732	998.470912	0.46829	0.00023426	0.20193	0.00010101	0.67022	0.00033527	500.24278556127393	64.686	1.5049	64.779	64.42	65.925	0.09288					133	55	4	0	0	0	4.3579E-24	2	16072	16072;16124		241.43	170.3	1	5634400			31296	5958	18124	18125	38426;38427	38426					-0.028385117190964593
NYAAALETF	9	Unmodified	_NYAAALETF_					0	0	0		ENST00000379514.2_1_9:33503785-33510678:-|nuORF;ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENST00000379514.2_1_9:33503785-33510678:-|nuORF	ENST00000379514.2_1_9:33503785-33510678:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2430725097656	2	500.242732	998.470912	0.35419	0.00017718	0.31777	0.00015896	0.67196	0.00033614	500.2428367828056	64.749	1.4135	64.74	64.415	65.828	-0.0095367					138	51	4	0	0	0	3.2167E-17	3	16110	16063;16110;16156		222.91	155.56	1	5914700			31297	5958	18124	18125	38428;38429;38430	38429					-0.028385117190964593
NYAAALTYL	9	Unmodified	_NYAAALTYL_					0	0	0			REV__ENST00000487806.5_1_1:84964021-84964084:-|nuORF	REV__ENST00000487806.5_1_1:84964021-84964084:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.24310302734375	2	500.260925	998.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.504	1	64.597	64.097	65.097	0.09288								0	0	0	0.15265	1	16030	16030		34.102	0	1		+		31298	21568	18125	18126	38431	38431					0.007983651775930412
NYADQISRL	9	Unmodified	_NYADQISRL_					0	0	0		nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3;SPAG9|p.K569Nfs*2|1|0.05|ENSG00000008294|chr17:50998574-50998575|GC/-|frameshift_variant;SPAG9|p.K569Nfs*4|1|0.05|ENSG00000008294|chr17:50998575-50998576|-/AATA|frameshift_variant;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000138834|Q9UPT6|MAPK8IP3	nc|ENSG00000008294|O60271-4|SPAG9;ENSG00000138834|ENST00000610761|MAPK8IP3	nc|ENSG00000008294|O60271-4|SPAG9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3560791015625	2	540.277638	1078.54072	0.74235	0.00040107	-0.024221	-1.3086E-05	0.71813	0.00038799	540.2774660145899	47.431	0.60933	47.431	47.162	47.771	0					46	21	3	0	0	0	0.052474	1	10796	10796		77.049	27.307	1	1417700			31299	392;4202	18126	18127	38432	38432					0.004593669495079666
NYADQISRL	9	Unmodified	_NYADQISRL_					0	0	0		nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3;SPAG9|p.K569Nfs*2|1|0.05|ENSG00000008294|chr17:50998574-50998575|GC/-|frameshift_variant;SPAG9|p.K569Nfs*4|1|0.05|ENSG00000008294|chr17:50998575-50998576|-/AATA|frameshift_variant;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000138834|Q9UPT6|MAPK8IP3	nc|ENSG00000008294|O60271-4|SPAG9;ENSG00000138834|ENST00000610761|MAPK8IP3	nc|ENSG00000008294|O60271-4|SPAG9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2777709960938	2	540.277638	1078.54072	0.45276	0.00024462	0.2306	0.00012459	0.68336	0.0003692	540.2776045992782	47.238	0.71251	47.29	47.038	47.75	0.052574					60	26	3	0	0	0	0.0022427	1	10718	10718		108.26	45.689	1	1308200			31300	392;4202	18126	18127	38433	38433					0.004593669495079666
NYADQISRL	9	Unmodified	_NYADQISRL_					0	0	0		nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3;SPAG9|p.K569Nfs*2|1|0.05|ENSG00000008294|chr17:50998574-50998575|GC/-|frameshift_variant;SPAG9|p.K569Nfs*4|1|0.05|ENSG00000008294|chr17:50998575-50998576|-/AATA|frameshift_variant;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000138834|Q9UPT6|MAPK8IP3	nc|ENSG00000008294|O60271-4|SPAG9;ENSG00000138834|ENST00000610761|MAPK8IP3	nc|ENSG00000008294|O60271-4|SPAG9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2778930664062	2	540.277638	1078.54072	1.1291	0.00061001	-0.30581	-0.00016522	0.82325	0.00044479	540.2772561860419	47.321	0.61367	47.375	47.117	47.731	0.054375					57	22	4	0	0	0	0.0058682	1	10754	10754		85.764	36.022	1	1686100			31301	392;4202	18126	18127	38434	38434					0.004593669495079666
NYAERAKEMM	10	Unmodified	_NYAERAKEMM_					0	0	0			REV__nc|ENSG00000101161|O94906-2|PRPF6	REV__nc|ENSG00000101161|O94906-2|PRPF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.7823486328125	2	621.783915	1241.55328	0.17018	0.00010581	-1.9913	-0.0012381	-1.8211	-0.0011323	621.7824310205039	67.937	0.56567	68.015	67.77	68.336	0.078041					39	19	3	0	0	0	0.19885	1	17105	17105		32.786	13.529	1	493760	+		31302	14249	18127	18128	38435	38435					-0.05783680974127492
NYAFLHRTL	9	Unmodified	_NYAFLHRTL_					0	0	0		ENSG00000128394|ENST00000308521|APOBEC3F;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B	ENSG00000128394|ENST00000308521|APOBEC3F;nc|ENSG00000179750|Q9UH17-3|APOBEC3B	ENSG00000128394|ENST00000308521|APOBEC3F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8172607421875	2	567.806365	1133.59818	0.22875	0.00012989	-0.57546	-0.00032675	-0.34671	-0.00019686	567.8058979449919	43.534	0.46029	43.534	43.307	43.767	0					23	16	2	0	0	0	0.017549	1	9575	9575		67.838	29.864	1	157340			31303	3367;7142	18128	18129	38436	38436					0.03672253945774173
NYAFLHRTL	9	Unmodified	_NYAFLHRTL_					0	0	0		ENSG00000128394|ENST00000308521|APOBEC3F;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B	ENSG00000128394|ENST00000308521|APOBEC3F;nc|ENSG00000179750|Q9UH17-3|APOBEC3B	ENSG00000128394|ENST00000308521|APOBEC3F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.8171997070312	2	567.806365	1133.59818	0.48792	0.00027704	-1.1613	-0.00065938	-0.67336	-0.00038234	567.8056020750346	43.094	0.35157	43.179	42.975	43.327	0.085197					16	12	2	0	0	0	0.15173	1	9473	9473		30.703	2.2166	1	261740			31304	3367;7142	18128	18129	38437	38437					0.03672253945774173
NYAFLHRTL	9	Unmodified	_NYAFLHRTL_					0	0	0		ENSG00000128394|ENST00000308521|APOBEC3F;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B	ENSG00000128394|ENST00000308521|APOBEC3F;nc|ENSG00000179750|Q9UH17-3|APOBEC3B	ENSG00000128394|ENST00000308521|APOBEC3F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.81689453125	2	567.806365	1133.59818	0.13359	7.5854E-05	-1.0802	-0.00061333	-0.94659	-0.00053748	567.8058842768468	43.043	0.40752	43.134	42.956	43.363	0.091362					20	14	2	0	0	0	0.13296	1	9457	9457		33.445	11.698	1	251600			31305	3367;7142	18128	18129	38438	38438					0.03672253945774173
NYAKVLLKL	9	Unmodified	_NYAKVLLKL_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ALS2|p.T978Ifs*30|1|0.04|ENSG00000003393|chr2:201727260-201727261|-/ATAAAGAAGAAATATAAATT|frameshift_variant;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENST00000494017.5_1_2:202591977-202598136:-|nuORF	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2852172851562	2	531.33951	1060.66447	0.37697	0.0002003	0.42706	0.00022691	0.80403	0.00042721	531.3396374306061	49.51	0.54459	49.542	49.268	49.813	0.032047					33	19	2	0	0	0	0.18123	1	11364	11364		34.402	20.496	1	304320			31306	302	18129	18130	38439	38439					0.13656069787793967
NYAKVLLKL	9	Unmodified	_NYAKVLLKL_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ALS2|p.T978Ifs*30|1|0.04|ENSG00000003393|chr2:201727260-201727261|-/ATAAAGAAGAAATATAAATT|frameshift_variant;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENST00000494017.5_1_2:202591977-202598136:-|nuORF	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.33951	1060.66447	0.63341	0.00033655	-0.044512	-2.3651E-05	0.5889	0.0003129	531.339447591569	49.434	0.43188	49.434	49.243	49.675	0	-0.06368	-0.00027956	NaN	34.402	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239850			31307	302	18129	18130							0.13656069787793967
NYAKVLLKL	9	Unmodified	_NYAKVLLKL_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;ALS2|p.T978Ifs*30|1|0.04|ENSG00000003393|chr2:201727260-201727261|-/ATAAAGAAGAAATATAAATT|frameshift_variant;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENST00000494017.5_1_2:202591977-202598136:-|nuORF	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	531.33951	1060.66447	0.34538	0.00018352	0.39314	0.00020889	0.73852	0.00039241	531.33967368293	49.473	0.43147	49.518	49.317	49.749	0.044888	0.019785	0.00018552	NaN	34.402	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287120			31308	302	18129	18130							0.13656069787793967
NYALKMFLY	9	Oxidation (M)	_NYALKM(Oxidation (M))FLY_		NYALKM(1)FLY		NYALKM(52)FLY	0	0	1		nc|ENSG00000009844|Q9NP79-2|VTA1;ENSG00000009844|ENST00000367630|VTA1	nc|ENSG00000009844|Q9NP79-2|VTA1	nc|ENSG00000009844|Q9NP79-2|VTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.7998657226562	2	589.79936	1177.58417	0.042695	2.5181E-05	-0.44496	-0.00026244	-0.40226	-0.00023726	589.7994440481061	61.525	0.55367	61.516	61.424	61.978	-0.0094566					32	19	2	0	0	0	0.051692	1	15137	15137		52.268	27.594	1	323700			31309	411	18130	18131	38440	38440		40			0.0024784040244867356
NYALKMFLY	9	Oxidation (M)	_NYALKM(Oxidation (M))FLY_					0	0	1		nc|ENSG00000009844|Q9NP79-2|VTA1;ENSG00000009844|ENST00000367630|VTA1	nc|ENSG00000009844|Q9NP79-2|VTA1	nc|ENSG00000009844|Q9NP79-2|VTA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	589.79936	1177.58417	0.24164	0.00014252	-1.1901	-0.0007019	-0.94842	-0.00055938	589.7989887716057	61.594	0.70177	61.594	61.413	62.115	0	0.026986	-0.00014513	NaN	52.268	39	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289430			31310	411	18130	18131				40			0.0024784040244867356
NYALKMFLY	9	Oxidation (M)	_NYALKM(Oxidation (M))FLY_					0	0	1		nc|ENSG00000009844|Q9NP79-2|VTA1;ENSG00000009844|ENST00000367630|VTA1	nc|ENSG00000009844|Q9NP79-2|VTA1	nc|ENSG00000009844|Q9NP79-2|VTA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	589.79936	1177.58417	-0.032724	-1.9301E-05	-1.4089	-0.00083099	-1.4417	-0.00085029	590.2997059358569	61.494	0.71245	61.591	61.408	62.12	0.096985	0.024044	-0.0004033	NaN	52.268	47	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279340			31311	411	18130	18131				40			0.0024784040244867356
NYANVRHQI	9	Unmodified	_NYANVRHQI_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.8034057617188	2	557.791247	1113.56794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.762	1	30.79	30.29	31.29	0.027946								0	0	0	0.19804	1	5669	5669		23.148	6.0355	1		+		31312	23129	18131	18132	38441	38441					0.015698952805678346
NYANVRHQI	9	Unmodified	_NYANVRHQI_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.803955078125	2	557.791247	1113.56794	-0.033735	-1.8817E-05	-2.7383	-0.0015274	-2.772	-0.0015462	557.790138164105	30.234	1.0512	30.261	29.923	30.975	0.027157					43	36	2	0	0	0	0.1669	2	5662	5662;5713		28.487	16.246	1	111720	+		31313	23129	18131	18132	38442;38443	38442					0.015698952805678346
NYANVRHQI	9	Unmodified	_NYANVRHQI_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	557.791247	1113.56794	0.39521	0.00022045	-3.8131	-0.0021269	-3.4179	-0.0019065	557.7890275233657	30.334	0.55523	30.334	29.97	30.525	0	0.036226	-0.00066595	NaN	28.487	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81186	+		31314	23129	18131	18132							0.015698952805678346
NYAPAFTML	9	Oxidation (M)	_NYAPAFTM(Oxidation (M))L_		NYAPAFTM(1)L		NYAPAFTM(140)L	0	0	1		ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2470703125	2	522.24696	1042.47937	0.25231	0.00013177	-0.1129	-5.8964E-05	0.1394	7.2804E-05	522.2467974312034	65.263	1.2607	65.263	64.807	66.068	0					130	45	4	0	0	0	7.827E-05	2	16303	16303;16347		144.35	98.329	1	2953400			31315	8100	18132	18133	38444;38445	38444		882			-0.040172810741296416
NYAPAFTML	9	Oxidation (M)	_NYAPAFTM(Oxidation (M))L_		NYAPAFTM(1)L		NYAPAFTM(140)L	0	0	1		ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2470703125	2	522.24696	1042.47937	0.1021	5.3323E-05	0.040186	2.0987E-05	0.14229	7.4309E-05	522.2469064783825	65.149	1.0487	65.238	64.844	65.893	0.088882					114	38	4	0	0	0	7.827E-05	2	16243	16243;16295		144.35	108.31	1	3268300			31316	8100	18132	18133	38446;38447	38446		882			-0.040172810741296416
NYAPAFTML	9	Oxidation (M)	_NYAPAFTM(Oxidation (M))L_		NYAPAFTM(1)L		NYAPAFTM(160)L	0	0	1		ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2470092773438	2	522.24696	1042.47937	0.17701	9.2444E-05	-0.10269	-5.363E-05	0.074321	3.8814E-05	522.246853962389	65.235	1.2565	65.224	64.809	66.066	-0.011337					132	45	5	0	0	0	5.6213E-07	2	16288	16288;16339		158.2	120.23	1	3461300			31317	8100	18132	18133	38448;38449	38448		882			-0.040172810741296416
NYAQVFNKL	9	Unmodified	_NYAQVFNKL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7929077148438	2	548.792924	1095.57129	0.48917	0.00026845	0.061879	3.3959E-05	0.55105	0.00030241	548.7927662064467	52.905	0.70255	52.905	52.656	53.358	0					43	25	3	0	0	0	6.7091E-11	1	12446	12446		181.33	139.49	1	1083900			31318	3962	18133	18134	38450	38450					0.027331453345595946
NYAQVFNKL	9	Unmodified	_NYAQVFNKL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7931518554688	2	548.792924	1095.57129	0.75318	0.00041334	-0.1826	-0.00010021	0.57057	0.00031313	548.7927358274046	52.823	0.63721	52.873	52.657	53.294	0.050575					34	22	3	0	0	0	3.5085E-07	1	12438	12438		166.45	122.59	1	1064400			31319	3962	18133	18134	38451	38451					0.027331453345595946
NYAQVFNKL	9	Unmodified	_NYAQVFNKL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.288330078125	2	548.792924	1095.57129	0.54921	0.0003014	0.70051	0.00038444	1.2497	0.00068584	548.7927399278454	53.161	1.0102	53.151	52.889	53.899	-0.0096092					56	37	2	0	0	0	0.10058	1	12457	12457		53.833	33.379	1	1207600			31320	3962	18133	18134	38452	38452					0.027331453345595946
NYAQVLDKF	9	Unmodified	_NYAQVLDKF_					0	0	0		nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF	nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7509765625	2	549.284931	1096.55531	0.63097	0.00034658	0.40348	0.00022163	1.0345	0.00056821	549.285895577506	56.504	1.447	56.504	56.158	57.605	0					83	53	2	0	0	0	0.0053261	1	13583	13583		107.56	71.436	1	9687500			31321	5074	18134	18135	38453	38453					0.010894390976773138
NYAQVLDKF	9	Unmodified	_NYAQVLDKF_					0	0	0		nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF	nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7505493164062	2	549.284931	1096.55531	0.85545	0.00046989	-0.075517	-4.148E-05	0.77994	0.00042841	549.2859738853842	56.41	1.0324	56.489	56.117	57.149	0.078674					84	38	4	0	0	0	0.0026004	1	13571	13571		117.84	73.979	1	13289000			31322	5074	18134	18135	38454	38454					0.010894390976773138
NYAQVLDKF	9	Unmodified	_NYAQVLDKF_					0	0	0		nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF	nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2967529296875	2	549.284931	1096.55531	0.88752	0.0004875	-1.0634	-0.0005841	-0.17586	-9.6599E-05	549.2853687630359	56.785	1.3108	56.766	56.403	57.714	-0.019081					113	47	4	0	0	0	0.1426	1	13759	13759		32.037	16.19	1	14221000			31323	5074	18134	18135	38455	38455					0.010894390976773138
NYARGHYTI	9	Unmodified	_NYARGHYTI_					0	0	0		ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000152086|ENST00000312988|TUBA3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7727661132812	2	547.772522	1093.53049	0.35015	0.0001918	0.15599	8.5446E-05	0.50614	0.00027725	547.7724654656547	26.87	1.4357	26.87	26.296	27.732	0					117	49	4	0	0	0	6.1526E-05	2	4490	4490;4540		147.06	147.06	1	1935800			31324	4999;6187	18135	18136	38456;38457	38456					-0.012531959850548446
NYARGHYTI	9	Unmodified	_NYARGHYTI_					0	0	0		ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000152086|ENST00000312988|TUBA3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.772705078125	2	547.772522	1093.53049	0.46113	0.00025259	0.22661	0.00012413	0.68773	0.00037672	547.7725361025226	26.866	1.2535	26.845	26.388	27.641	-0.021412					111	43	4	0	0	0	0.0010463	2	4517	4517;4572		122.18	91.543	1	2250000			31325	4999;6187	18135	18136	38458;38459	38458					-0.012531959850548446
NYARGHYTI	9	Unmodified	_NYARGHYTI_					0	0	0		ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000152086|ENST00000312988|TUBA3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7728271484375	2	547.772522	1093.53049	0.54158	0.00029666	0.12076	6.6147E-05	0.66233	0.00036281	547.7724707866828	26.967	1.0799	26.956	26.595	27.675	-0.01156					106	37	4	0	0	0	0.00014042	2	4524	4524;4571		134.3	103.66	1	2093100			31326	4999;6187	18135	18136	38460;38461	38460					-0.012531959850548446
NYATIRVEI	9	Unmodified	_NYATIRVEI_					0	0	0			REV__ENSG00000226761|ENST00000533467|TAS2R46	REV__ENSG00000226761|ENST00000533467|TAS2R46	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3142700195312	2	539.798206	1077.58186	0.61788	0.00033353	0.61772	0.00033344	1.2356	0.00066697	539.7985846535414	47.593	0.66279	47.641	47.109	47.772	0.047523					38	24	2	0	0	0	0.20651	1	10679	10679		26.884	11.036	1	501970	+		31327	19121	18136	18137	38462	38462					0.0461712798901317
NYATIRVEI	9	Unmodified	_NYATIRVEI_					0	0	0			REV__ENSG00000226761|ENST00000533467|TAS2R46	REV__ENSG00000226761|ENST00000533467|TAS2R46	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3143920898438	2	539.798206	1077.58186	0.93314	0.00050371	0.23443	0.00012654	1.1676	0.00063025	539.7983526368349	47.59	0.58608	47.633	47.185	47.771	0.04332					31	20	2	0	0	0	0.20651	1	10709	10709		26.884	11.036	1	508120	+		31328	19121	18136	18137	38463	38463					0.0461712798901317
NYATIVVGF	9	Unmodified	_NYATIVVGF_					0	0	0		nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8	nc|ENSG00000102763|A3KMH1-3|VWA8	nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.262939453125	2	492.263468	982.512382	0.68848	0.00033892	-0.043267	-2.1299E-05	0.64522	0.00031762	492.2631486906805	74.512	0.56052	74.512	74.374	74.934	0					36	19	3	0	0	0	0.034444	1	19119	19119		58.679	26.373	1	276620			31329	1779	18137	18138	38464	38464					0.02042669040247347
NYATIVVGF	9	Unmodified	_NYATIVVGF_					0	0	0		nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8	nc|ENSG00000102763|A3KMH1-3|VWA8	nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	492.263468	982.512382	0.52689	0.00025937	0.020882	1.028E-05	0.54777	0.00026965	492.2632229044415	74.528	0.5663	74.498	74.328	74.894	-0.030655	-0.0072145	4.0957E-05	NaN	58.679	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216840			31330	1779	18137	18138							0.02042669040247347
NYATRIVTL	9	Unmodified	_NYATRIVTL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8007202148438	2	525.800749	1049.58694	0.5308	0.0002791	-0.45017	-0.0002367	0.080636	4.2398E-05	525.8004223267242	49.793	1.1642	49.793	49.243	50.407	0					120	42	4	0	0	0	2.2231E-07	4	11487	11487;11536;11599;11625		171.46	108.89	1	3102900			31331	2674	18138	18139	38465;38466;38467;38468	38465					0.06413431851638052
NYATRIVTL	9	Unmodified	_NYATRIVTL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8006591796875	2	525.800749	1049.58694	0.53094	0.00027917	-0.50873	-0.00026749	0.022208	1.1677E-05	525.8004330557266	49.75	1.1193	49.795	49.342	50.461	0.044891					114	41	4	0	0	0	8.0996E-05	2	11476	11476;11526		143.91	81.336	1	3660900			31332	2674	18138	18139	38469;38470	38469					0.06413431851638052
NYATRIVTL	9	Unmodified	_NYATRIVTL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8008422851562	2	525.800749	1049.58694	0.55812	0.00029346	-0.48424	-0.00025461	0.073886	3.8849E-05	525.8003924399388	49.785	0.98719	49.805	49.4	50.387	0.020691					105	36	4	0	0	0	0.0016481	2	11516	11467;11516		114.5	68.797	1	3510200			31333	2674	18138	18139	38471;38472	38472					0.06413431851638052
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3;IFIT3|p.F457Sfs*33|1|0.36|ENSG00000119917|chr10:89340022-89340022|T/-|frameshift_variant	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.79296875	2	614.792924	1227.57129	0.21117	0.00012982	0.069403	4.2669E-05	0.28057	0.00017249	614.792850986475	68.083	1.4726	68.083	67.757	69.229	0					138	53	4	0	0	0	4.2225E-11	2	17098	17098;17143		189.49	149.54	1	2681500			31334	2915	18139	18140	38473;38474	38473					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3;IFIT3|p.F457Sfs*33|1|0.36|ENSG00000119917|chr10:89340022-89340022|T/-|frameshift_variant	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	614.7928466796875	2	614.792924	1227.57129	0.25752	0.00015832	-0.019405	-1.193E-05	0.23811	0.00014639	614.792735783284	67.952	1.1425	68.03	67.744	68.887	0.078041					123	41	4	0	0	0	4.2225E-11	2	17108	17060;17108		189.49	141.74	1	2654500			31335	2915	18139	18140	38475;38476	38476					-0.03338854665435065
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3;IFIT3|p.F457Sfs*33|1|0.36|ENSG00000119917|chr10:89340022-89340022|T/-|frameshift_variant	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	614.7929077148438	2	614.792924	1227.57129	0.26365	0.00016209	-0.037014	-2.2756E-05	0.22664	0.00013933	614.7928047383615	68.103	1.1952	68.087	67.81	69.006	-0.01651					121	42	4	0	0	0	4.2225E-11	2	17146	17094;17146		189.49	149.54	1	3086000			31336	2915	18139	18140	38477;38478	38478					-0.03338854665435065
NYAYCQVVRE	10	Unmodified	_NYAYCQVVRE_					0	0	0		FANCM|p.V541Gfs*9|1|0.05|ENSG00000187790|chr14:45164393-45164394|-/TTTGGGA|frameshift_variant;nc|ENSG00000187790|Q8IYD8-2|FANCM;ENSG00000187790|ENST00000267430|FANCM	FANCM|p.V541Gfs*9|1|0.05|ENSG00000187790|chr14:45164393-45164394|-/TTTGGGA|frameshift_variant	FANCM|p.V541Gfs*9|1|0.05|ENSG00000187790|chr14:45164393-45164394|-/TTTGGGA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.2913208007812	2	622.790055	1243.56556	0.21014	0.00013087	0.83348	0.00051908	1.0436	0.00064996	622.7905441561087	63.615	1.0315	63.711	63.416	64.447	0.095722					82	36	3	0	0	0	0.25219	1	15827	15827		26.268	0	1	247720			31337	7709	18140	18141	38479	38479					-0.04648321239415054
NYDEYAIFL	9	Unmodified	_NYDEYAIFL_					0	0	0		ENSG00000106927|ENST00000265132|AMBP;ENST00000540645.5_1_9:116823569-116838999:-|nuORF;CON__P00978	ENSG00000106927|ENST00000265132|AMBP	ENSG00000106927|ENST00000265132|AMBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.7257080078125	2	574.268947	1146.52334	0.30735	0.0001765	-0.63694	-0.00036578	-0.32959	-0.00018927	574.2684257585447	60.954	2.1806	61.051	60.726	62.906	0.096985					134	79	2	0	0	0	0.24739	1	14851	14851		13.508	13.508	1	4812000		+	31338	2107	18141	18142	38480	38480					-0.04405973376151451
NYDFIPGSVV	10	Unmodified	_NYDFIPGSVV_					0	0	0			REV__ENSG00000154269|ENST00000357639|ENPP3	REV__ENSG00000154269|ENST00000357639|ENPP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7930297851562	2	555.776939	1109.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.014	1	42.101	41.601	42.601	0.086464								0	0	0	0.33661	1	9109	9109		20.454	3.3407	1		+		31339	16657	18142	18143	38481	38481					-0.01106267139243755
NYDPNQRPFF	10	Unmodified	_NYDPNQRPFF_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.3016967773438	2	649.301644	1296.58874	0.46436	0.00030151	-0.07481	-4.8574E-05	0.38955	0.00025293	649.3015932221163	51.705	0.66965	51.705	51.481	52.151	0					43	24	2	0	0	0	0.0023511	1	12103	12103		107.1	68.924	1	1108000			31340	5572	18143	18144	38482	38482					-0.047695591304545815
NYDPNQRPFF	10	Unmodified	_NYDPNQRPFF_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.3021850585938	2	649.301644	1296.58874	0.36918	0.00023971	0.26039	0.00016907	0.62957	0.00040878	649.3017670827437	51.691	0.744	51.738	51.454	52.198	0.046574					42	26	2	0	0	0	0.0034473	2	12063	12063;12115		100.71	69.44	1	1168900			31341	5572	18143	18144	38483;38484	38483					-0.047695591304545815
NYDPNQRPFF	10	Unmodified	_NYDPNQRPFF_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.3017578125	2	649.301644	1296.58874	0.11905	7.7297E-05	0.21794	0.00014151	0.33699	0.00021881	649.3017916413361	51.956	0.75637	51.955	51.602	52.358	-0.00080872					47	27	2	0	0	0	0.0027997	2	12131	12131;12254		104.48	89.646	1	842530			31342	5572	18143	18144	38485;38486	38485					-0.047695591304545815
NYDVDAVGVVF	11	Unmodified	_NYDVDAVGVVF_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.2929077148438	2	599.292953	1196.57135	0.56181	0.00033669	-0.84266	-0.000505	-0.28085	-0.00016831	599.2923674775669	39.734	0.60142	39.827	39.522	40.123	0.09267					37	20	2	0	0	0	0.42762	1	8422	8422		7.609	0.88579	1	375490	+		31343	14737	18144	18145	38487	38487					-0.019068994560939245
NYEEVKEFL	9	Unmodified	_NYEEVKEFL_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;AFF1|p.V253Sfs*58|1|0.35|ENSG00000172493|chr4:87047309-87047309|G/-|frameshift_variant;ENST00000504956.5_1_4:87856214-87968836:+|nuORF	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.787353515625	2	585.787504	1169.56045	0.44792	0.00026239	-0.12496	-7.3202E-05	0.32296	0.00018918	585.7873241165477	56.62	0.61174	56.699	56.513	57.125	0.078674					46	22	3	0	0	0	0.14808	1	13639	13639		46.022	24.485	1	385270			31344	6639	18145	18146	38488	38488					-0.01754301830374061
NYEEVKEFL	9	Unmodified	_NYEEVKEFL_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;AFF1|p.V253Sfs*58|1|0.35|ENSG00000172493|chr4:87047309-87047309|G/-|frameshift_variant;ENST00000504956.5_1_4:87856214-87968836:+|nuORF	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	585.787504	1169.56045	0.41916	0.00024554	0.28187	0.00016511	0.70102	0.00041065	585.7876984615034	56.727	0.45527	56.727	56.582	57.038	0	-0.078154	0.00034949	NaN	46.022	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378790			31345	6639	18145	18146							-0.01754301830374061
NYEEVKEFL	9	Unmodified	_NYEEVKEFL_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;AFF1|p.V253Sfs*58|1|0.35|ENSG00000172493|chr4:87047309-87047309|G/-|frameshift_variant;ENST00000504956.5_1_4:87856214-87968836:+|nuORF	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	585.787504	1169.56045	0.49444	0.00028964	-0.11015	-6.4526E-05	0.38429	0.00022511	585.7871625866728	57.009	0.52604	56.99	56.809	57.335	-0.019081	0.18486	-0.00010979	NaN	46.022	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393480			31346	6639	18145	18146							-0.01754301830374061
NYEFPHLQN	9	Unmodified	_NYEFPHLQN_					0	0	0		ENPP4|p.N327Kfs*2|1|0.79|ENSG00000001561|chr6:46141202-46141203|-/A|frameshift_variant;ENSG00000001561|ENST00000321037|ENPP4	ENPP4|p.N327Kfs*2|1|0.79|ENSG00000001561|chr6:46141202-46141203|-/A|frameshift_variant	ENPP4|p.N327Kfs*2|1|0.79|ENSG00000001561|chr6:46141202-46141203|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.2700805664062	2	581.269813	1160.52507	0.094588	5.4981E-05	0.40154	0.0002334	0.49612	0.00028838	581.2699090642227	51.976	0.62248	51.975	51.71	52.332	-0.00081253					70	22	4	0	0	0	0.14786	1	12195	12195		31.268	0.6318	1	1707400			31347	284	18146	18147	38489	38489					-0.04876919567504956
NYEFPHLQN	9	Unmodified	_NYEFPHLQN_					0	0	0		ENPP4|p.N327Kfs*2|1|0.79|ENSG00000001561|chr6:46141202-46141203|-/A|frameshift_variant;ENSG00000001561|ENST00000321037|ENPP4	ENPP4|p.N327Kfs*2|1|0.79|ENSG00000001561|chr6:46141202-46141203|-/A|frameshift_variant	ENPP4|p.N327Kfs*2|1|0.79|ENSG00000001561|chr6:46141202-46141203|-/A|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	581.269813	1160.52507	0.27593	0.00016039	0.44821	0.00026053	0.72414	0.00042092	581.2699632794018	51.749	0.64182	51.749	51.481	52.123	0	-0.067496	8.3038E-05	NaN	31.268	57	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1228500			31348	284	18146	18147							-0.04876919567504956
NYERHWKEL	9	Unmodified	_NYERHWKEL_					0	0	0			REV__ENST00000503698.1_1_5:38954866-38959404:-|nuORF	REV__ENST00000503698.1_1_5:38954866-38959404:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.5472717285156	3	425.5474	1273.62037	-0.03721	-1.5835E-05	-0.29572	-0.00012584	-0.33293	-0.00014168	425.5472263558771	38.246	0.91441	38.343	37.953	38.867	0.097527					85	32	4	0	0	0	0.21447	1	7939	7939		15.739	4.9391	1	1468800	+		31349	17149	18147	18148	38490	38490					-0.0054956637648047035
NYERHWKEL	9	Unmodified	_NYERHWKEL_					0	0	0			REV__ENST00000503698.1_1_5:38954866-38959404:-|nuORF	REV__ENST00000503698.1_1_5:38954866-38959404:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	425.5474	1273.62037	-0.03721	-1.5835E-05	-0.29572	-0.00012584	-0.33293	-0.00014168	425.5472263558771	38.246	0.91441	38.343	37.953	38.867	0.097527	-0.0029875	-0.00017321	NaN	15.739	85	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1468800	+		31350	17149	18147	18148							-0.0054956637648047035
NYFAYVQMF	9	Oxidation (M)	_NYFAYVQM(Oxidation (M))F_		NYFAYVQM(1)F		NYFAYVQM(89)F	0	0	1		ENSG00000130935|ENST00000253247|NOL11;NOL11|p.K346Nfs*9|1|0.05|ENSG00000130935|chr17:67736006-67736007|-/TAAAGCCTTATCACTCACT|frameshift_variant	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.7655639648438	2	599.765517	1197.51648	0.22064	0.00013233	0.11895	7.1343E-05	0.33959	0.00020368	599.765480881544	76.007	0.918	76.007	75.449	76.367	0					62	32	3	0	0	0	0.004681	1	19553	19553		88.954	52.827	1	289000			31351	3527	18148	18149	38491	38491		445			-0.07437609528369649
NYFAYVQMF	9	Oxidation (M)	_NYFAYVQM(Oxidation (M))F_		NYFAYVQM(1)F		NYFAYVQM(100)F	0	0	1		ENSG00000130935|ENST00000253247|NOL11;NOL11|p.K346Nfs*9|1|0.05|ENSG00000130935|chr17:67736006-67736007|-/TAAAGCCTTATCACTCACT|frameshift_variant	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.7651977539062	2	599.765517	1197.51648	0.43802	0.00026271	-0.52382	-0.00031417	-0.085796	-5.1457E-05	599.765499250587	75.817	0.86024	75.87	75.428	76.289	0.053413					52	30	2	0	0	0	0.0033114	2	19565	19503;19565		99.799	55.941	1	249510			31352	3527	18148	18149	38492;38493	38493		445			-0.07437609528369649
NYFAYVQMF	9	Oxidation (M)	_NYFAYVQM(Oxidation (M))F_		NYFAYVQM(1)F		NYFAYVQM(89)F	0	0	1		ENSG00000130935|ENST00000253247|NOL11;NOL11|p.K346Nfs*9|1|0.05|ENSG00000130935|chr17:67736006-67736007|-/TAAAGCCTTATCACTCACT|frameshift_variant	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.765625	2	599.765517	1197.51648	0.38316	0.0002298	-0.6204	-0.00037209	-0.23724	-0.00014229	599.7652083819287	75.976	0.89912	75.944	75.391	76.29	-0.031487					57	32	2	0	0	0	0.004681	1	19530	19530		88.954	47.114	1	374690			31353	3527	18148	18149	38494	38494		445			-0.07437609528369649
NYFDEQFEF	9	Unmodified	_NYFDEQFEF_					0	0	0		ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.7539672851562	2	619.753661	1237.49277	0.24259	0.00015035	0.36184	0.00022425	0.60443	0.0003746	619.7534116021883	79.978	0.37996	79.978	79.797	80.177	0					27	13	3	0	0	0	0.1426	1	20792	20792		32.037	21.238	1	195530			31354	5591	18149	18150	38495	38495					-0.11647751761188374
NYFDEQFEF	9	Unmodified	_NYFDEQFEF_					0	0	0		ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.7540893554688	2	619.753661	1237.49277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.095	1	80.068	79.568	80.568	-0.02713								0	0	0	0.13984	1	20785	20785		37.075	2.1426	1				31355	5591	18149	18150	38496	38496					-0.11647751761188374
NYFDEQFEF	9	Unmodified	_NYFDEQFEF_					0	0	0		ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	ENSG00000162639|ENST00000651461|HENMT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.7537841796875	2	619.753661	1237.49277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.272	1	80.245	79.745	80.745	-0.026825								0	0	0	0.15548	1	20839	20839		33.445	4.9504	1				31356	5591	18149	18150	38497	38497					-0.11647751761188374
NYFHLAVAF	9	Unmodified	_NYFHLAVAF_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	ENSG00000147459|ENST00000276440|DOCK5;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;nc|ENSG00000150760|Q14185|DOCK1	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.763427734375	2	541.276909	1080.53927	0.49327	0.000267	0.51567	0.00027912	1.0089	0.00054612	541.2770650003359	70.886	0.35963	70.886	70.683	71.043	0					20	12	2	0	0	0	0.072844	1	17987	17987		44.407	11.953	1	183140			31357	3792;4767;4924	18150	18151	38498	38498					0.0022177765142714634
NYFHLAVAF	9	Unmodified	_NYFHLAVAF_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	ENSG00000147459|ENST00000276440|DOCK5;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;nc|ENSG00000150760|Q14185|DOCK1	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7632446289062	2	541.276909	1080.53927	0.64609	0.00034972	0.049981	2.7053E-05	0.69607	0.00037677	541.7783774616257	70.996	0.38651	70.971	70.744	71.13	-0.024872					17	13	2	0	0	0	0.072844	1	17985	17985		44.407	8.28	1	204380			31358	3792;4767;4924	18150	18151	38499	38499					0.0022177765142714634
NYFHLAVAF	9	Unmodified	_NYFHLAVAF_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	ENSG00000147459|ENST00000276440|DOCK5;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;nc|ENSG00000150760|Q14185|DOCK1	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	541.276909	1080.53927	0.49398	0.00026738	0.034621	1.874E-05	0.52861	0.00028612	541.7783829216374	71.008	0.075584	71.069	71.017	71.092	0.060776	0.093495	-3.2523E-05	NaN	44.407	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171750			31359	3792;4767;4924	18150	18151							0.0022177765142714634
NYFIPSHYF	9	Unmodified	_NYFIPSHYF_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-5|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.2798461914062	2	594.279649	1186.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.354	1	65.443	64.943	65.943	0.088882								0	0	0	0.093871	1	16290	16290		47.749	3.8904	1				31360	4711	18151	18152	38500	38500					-0.04106543556758879
NYFIPSHYF	9	Unmodified	_NYFIPSHYF_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-5|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2796020507812	2	594.279649	1186.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.466	1	65.455	64.955	65.955	-0.011337								0	0	0	0.11932	1	16322	16322		41.84	9.5341	1				31361	4711	18151	18152	38501	38501					-0.04106543556758879
NYFNRGIQY	9	Unmodified	_NYFNRGIQY_					0	0	0			REV__nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	REV__nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.8165283203125	2	587.78563	1173.55671	0.39519	0.00023229	2.2638	0.0013306	2.659	0.0015629	587.7859846744844	68.773	0.5657	68.845	68.618	69.183	0.071938					40	20	3	0	0	0	0.24688	1	17275	17275		10.074	0	1	261490	+		31362	15690	18152	18153	38502	38502					-0.023129268135562597
NYFNRGIQY	9	Unmodified	_NYFNRGIQY_					0	0	0			REV__nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	REV__nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.8165283203125	2	587.78563	1173.55671	0.39212	0.00023048	2.3232	0.0013655	2.7153	0.001596	588.2885321887345	68.841	0.56207	68.822	68.68	69.242	-0.019157					39	19	3	0	0	0	0.21389	1	17371	17371		25.399	4.5281	1	292440	+		31363	15690	18152	18153	38503	38503					-0.023129268135562597
NYFQQANEL	9	Unmodified	_NYFQQANEL_					0	0	0		nc|ENSG00000023228|P28331-3|NDUFS1;nc|ENSG00000023228|P28331-4|NDUFS1;nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1	nc|ENSG00000023228|P28331-3|NDUFS1	nc|ENSG00000023228|P28331-3|NDUFS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.318603515625	2	563.76182	1125.50909	0.59862	0.00033748	0.6185	0.00034869	1.2171	0.00068617	563.7620137809402	55.559	0.38214	55.63	55.446	55.828	0.070885					20	13	2	0	0	0	0.22701	1	13283	13283		23.79	11.258	1	133580			31364	520	18153	18154	38504	38504					-0.048646258044072965
NYFQQANEL	9	Unmodified	_NYFQQANEL_					0	0	0		nc|ENSG00000023228|P28331-3|NDUFS1;nc|ENSG00000023228|P28331-4|NDUFS1;nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1	nc|ENSG00000023228|P28331-3|NDUFS1	nc|ENSG00000023228|P28331-3|NDUFS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.76182	1125.50909	0.36437	0.00020542	0.29201	0.00016463	0.65638	0.00037004	563.7619236283168	55.679	0.42164	55.679	55.46	55.882	0	0.024502	-0.00015254	NaN	23.79	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134570			31365	520	18153	18154							-0.048646258044072965
NYFTEEFL	8	Unmodified	_NYFTEEFL_					0	0	0			REV__ENSG00000105186|ENST00000306065|ANKRD27	REV__ENSG00000105186|ENST00000306065|ANKRD27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3191528320312	2	531.742565	1061.47058	0.53078	0.00028224	-4.4058	-0.0023427	-3.875	-0.0020605	532.2396897054796	85.559	0.12643	85.641	85.541	85.667	0.082809					6	4	2	0	0	0	0.3433	1	22465	22465		6.2058	1.4498	1	47497	+		31366	14441	18154	18155	38505	38505					-0.05769931438931053
NYGDIELLF	9	Unmodified	_NYGDIELLF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.271484375	2	542.27149	1082.52843	0.60519	0.00032818	-0.066495	-3.6058E-05	0.53869	0.00029212	542.2712650172292	88.687	1.3965	88.687	88.349	89.746	0					146	73	4	0	0	0	0.0059482	3	23414	23368;23414;23459		85.642	26.963	1	844250			31367	7854	18155	18156	38506;38507;38508	38507					-0.009536695135238915
NYGDIELLF	9	Unmodified	_NYGDIELLF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2716674804688	2	542.27149	1082.52843	0.59967	0.00032518	-0.24951	-0.0001353	0.35015	0.00018988	542.2712643791726	88.535	0.99358	88.625	88.295	89.288	0.089203					101	42	4	0	0	0	0.0028626	3	23375	23375;23422;23467		103.35	44.675	1	1318400			31368	7854	18155	18156	38509;38510;38511	38509					-0.009536695135238915
NYGDIELLF	9	Unmodified	_NYGDIELLF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2717895507812	2	542.27149	1082.52843	0.64785	0.00035131	-0.24108	-0.00013073	0.40678	0.00022058	542.2713034375795	88.656	1.2983	88.653	88.336	89.635	-0.0028381					107	63	2	0	0	0	0.0059482	3	23408	23408;23419;23467		85.642	26.963	1	1774800			31369	7854	18155	18156	38512;38513;38514	38512					-0.009536695135238915
NYGDQVQHF	9	Unmodified	_NYGDQVQHF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.245361328125	2	554.246338	1106.47812	0.44758	0.00024807	-0.86151	-0.00047749	-0.41393	-0.00022942	554.2457623882699	36.71	0.81625	36.797	36.542	37.358	0.08741					62	29	3	0	0	0	6.549E-06	2	7468	7468;7517		155.95	108.21	1	1049800			31370	5101	18156	18157	38515;38516	38515					-0.07085779118665414
NYGEEDEEDGG	11	Unmodified	_NYGEEDEEDGG_					0	0	0			REV__nc|ENSG00000248546|O43423|ANP32CP	REV__nc|ENSG00000248546|O43423|ANP32CP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8720092773438	2	607.210012	1212.40547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.93	1	117.9	117.4	118.4	-0.024147								0	0	0	0.3823	1	30506	30506		0	0	1		+		31371	23214	18157	18158	38517	38517					-0.19223622493427683
NYGHVYAVF	9	Unmodified	_NYGHVYAVF_					0	0	0		nc|ENSG00000067829|P51553-2|IDH3G;ENSG00000067829|ENST00000217901|IDH3G	nc|ENSG00000067829|P51553-2|IDH3G	nc|ENSG00000067829|P51553-2|IDH3G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.2587890625	2	535.258717	1068.50288	0.46926	0.00025118	-0.4853	-0.00025976	-0.016035	-8.5829E-06	535.2582579269534	51.826	1.4467	51.826	51.565	53.012	0					114	52	4	0	0	0	0.0030686	3	12147	12102;12147;12198		101.72	69.416	1	3888700			31372	870	18158	18159	38518;38519;38520	38519					-0.028630992453145154
NYGHVYAVF	9	Unmodified	_NYGHVYAVF_					0	0	0		nc|ENSG00000067829|P51553-2|IDH3G;ENSG00000067829|ENST00000217901|IDH3G	nc|ENSG00000067829|P51553-2|IDH3G	nc|ENSG00000067829|P51553-2|IDH3G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.2589721679688	2	535.258717	1068.50288	0.35082	0.00018778	0.028209	1.5099E-05	0.37902	0.00020288	535.2586772352736	51.804	0.85686	51.851	51.528	52.385	0.046574					90	30	4	0	0	0	0.0030686	3	12096	12096;12145;12195		101.72	76.323	1	4408900			31373	870	18158	18159	38521;38522;38523	38521					-0.028630992453145154
NYGHVYAVF	9	Unmodified	_NYGHVYAVF_					0	0	0		nc|ENSG00000067829|P51553-2|IDH3G;ENSG00000067829|ENST00000217901|IDH3G	nc|ENSG00000067829|P51553-2|IDH3G	nc|ENSG00000067829|P51553-2|IDH3G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.2587890625	2	535.258717	1068.50288	0.27248	0.00014584	-0.32275	-0.00017275	-0.050272	-2.6908E-05	535.2584294346614	51.992	1.4382	51.991	51.656	53.094	-0.00080872					125	52	4	0	0	0	0.0030686	3	12138	12138;12182;12227		101.72	76.323	1	4119600			31374	870	18158	18159	38524;38525;38526	38524					-0.028630992453145154
NYGRVFSEW	9	Unmodified	_NYGRVFSEW_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.2725830078125	2	579.272355	1156.53016	0.79137	0.00045842	-0.34921	-0.00020229	0.44216	0.00025613	579.2720823143114	55.851	0.77918	55.851	55.564	56.344	0					67	27	4	0	0	0	0.0010463	2	13366	13366;13420		122.18	89.874	1	1839500			31375	2572	18159	18160	38527;38528	38527					-0.04184615704912176
NYGRVFSEW	9	Unmodified	_NYGRVFSEW_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.2725830078125	2	579.272355	1156.53016	0.65773	0.00038101	-0.08486	-4.9157E-05	0.57287	0.00033185	579.2722585763497	55.722	0.79189	55.793	55.473	56.265	0.070885					61	25	4	0	0	0	0.00078391	2	13327	13327;13375		125.53	93.224	1	1850500			31376	2572	18159	18160	38529;38530	38529					-0.04184615704912176
NYGRVFSEW	9	Unmodified	_NYGRVFSEW_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.2725830078125	2	579.272355	1156.53016	0.86265	0.00049971	-0.19845	-0.00011496	0.6642	0.00038475	579.2721764446509	56.236	0.84488	56.217	55.884	56.729	-0.019081					58	30	3	0	0	0	4.3881E-05	2	13494	13447;13494		149.91	111.76	1	2988700			31377	2572	18159	18160	38531;38532	38532					-0.04184615704912176
NYGTYPYQSAP	11	Unmodified	_NYGTYPYQSAP_					0	0	0			REV__ENSG00000070366|ENST00000263073|SMG6	REV__ENSG00000070366|ENST00000263073|SMG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.85626220703125	3	420.855899	1259.54587	0.14255	5.9994E-05	0.36069	0.0001518	0.50324	0.00021179	421.1902762288383	41.407	0.42275	41.504	41.177	41.6	0.096622					24	15	2	0	0	0	0.37585	1	8899	8899		8.2864	0	1	970810	+		31378	13724	18160	18161	38533	38533					-0.07352373978528703
NYGVLLIEF	9	Unmodified	_NYGVLLIEF_					0	0	0		ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B;nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B	ENST00000562717.1_1_16:50188117-50258568:+|nuORF	ENST00000562717.1_1_16:50188117-50258568:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2825927734375	2	534.292225	1066.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.89	1	90.981	90.481	91.481	0.090668								0	0	0	0.23852	1	24101	24101		10.074	0.6908	1				31379	2993	18161	18162	38534	38534					0.039275112458199146
NYGVTFPIF	9	Unmodified	_NYGVTFPIF_					0	0	0		ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2711181640625	2	529.271293	1056.52803	0.65904	0.00034881	0.072616	3.8434E-05	0.73166	0.00038725	529.2709123987898	87.856	0.94806	87.856	87.325	88.273	0					72	45	2	0	0	0	0.0023784	3	23168	23168;23211;23263		107.19	10.839	1	1548700			31380	5821	18162	18163	38535;38536;38537	38535					0.002029555572789832
NYHFPCND	8	Unmodified	_NYHFPCND_					0	0	0			REV__nc|ENSG00000137801|P07996-2|THBS1	REV__nc|ENSG00000137801|P07996-2|THBS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.77197265625	2	505.195259	1008.37597	0.16376	8.273E-05	1.0489	0.00052991	1.2127	0.00061264	505.1956089502051	61.667	0.44701	61.667	61.413	61.86	0					25	16	2	0	0	0	0.34319	1	15133	15133		5.7604	0	1	234650	+	+	31381	13263	18163	18164	38538	38538					-0.12788768461928157
NYHQRILQ	8	Unmodified	_NYHQRILQ_					0	0	0		L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|142|3|sense;L1PA3_dup1464|chr2:208773458-208776294:+|1.730898577886428|0.207304446788351|3.06|523.0|54|3|sense;L1PA3_dup8093|chr11:58696286-58700694:-|8.889446604907338|0.3518458624306171|4.66|529.0|104|3|sense;L1PA3_dup6831|chrX:106827828-106830948:+|1.112501382732906|0.4076652707632567|1.45|539.0|24|2|sense;L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|25|1|sense;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|134|3|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|142|3|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|142|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2792358398438	2	536.28834	1070.56213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.405	1	75.405	74.905	75.905	0								0	0	0	0.34492	1	19372	19372		16.942	0.79319	1				31382	12435	18164	18165	38539	38539					0.02966796768896529
NYHRNMSWL	9	Unmodified	_NYHRNMSWL_					0	0	0		nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF	nc|ENSG00000144406|Q8N2C7-7|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5260314941406	3	407.52583	1219.55566	0.098917	4.0311E-05	0.31722	0.00012927	0.41614	0.00016959	407.52599208676185	53.517	0.92932	53.517	53.311	54.24	0					127	34	6	0	0	0	0.28225	1	12639	12639		11.495	3.0504	1	3593900			31383	4582	18165	18166	38540	38540					-0.045334644541298985
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3302612304688	2	584.329673	1166.64479	0.48857	0.00028549	-0.87584	-0.00051178	-0.38726	-0.00022629	584.3299819768454	53.529	2.8482	53.529	53.173	56.021	0					314	104	6	0	0	0	2.4074E-11	10	12634	12587;12634;12682;12730;12785;12948;12994;13094;13290;13339		195.45	89.038	1	107210000			31384	537	18166	18167	38541;38542;38543;38544;38545;38546;38547;38548;38549;38550	38542					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2896728515625	2	584.329673	1166.64479	0.38208	0.00022326	-0.031605	-1.8468E-05	0.35047	0.00020479	584.3295964959598	66.818	0.34282	66.818	66.514	66.856	0					18	11	2	0	0	0	0.24471	1	16702	16702		17.113	1.2657	1	106250			31385	537	18166	18167	38551	38551					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.7984008789062	2	584.329673	1166.64479	0.48313	0.00028231	0.39591	0.00023134	0.87905	0.00051365	584.3296006619528	56.5	1.4228	56.5	56.13	57.552	0					98	52	3	0	0	0	0.027994	1	13699	13699		83.429	51.123	1	465840			31386	537	18166	18167	38552	38552					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2875366210938	2	584.329673	1166.64479	0.23989	0.00014017	1.519	0.00088761	1.7589	0.0010278	584.3301112010254	59.19	0.85082	59.19	58.739	59.59	0					55	29	3	0	0	0	0.075169	1	14298	14298		62.573	18.714	1	222770			31387	537	18166	18167	38553	38553					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3302612304688	2	584.329673	1166.64479	0.21152	0.0001236	-0.49738	-0.00029063	-0.28586	-0.00016703	584.3301664793609	53.469	2.0344	53.525	53.221	55.255	0.056255					281	76	6	0	0	0	2.4074E-11	6	12618	12550;12580;12618;12667;12716;12767		195.45	92.099	1	112300000			31388	537	18166	18167	38554;38555;38556;38557;38558;38559	38556					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3299560546875	2	584.329673	1166.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.472	1	55.543	55.043	56.043	0.070885								0	0	0	0.006527	1	13248	13248		85.642	45.692	1				31389	537	18166	18167	38560	38560					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3518676757812	2	584.329673	1166.64479	-0.15179	-8.8696E-05	1.0353	0.00060494	0.88348	0.00051624	584.3306723948458	61.618	0.35836	61.715	61.566	61.924	0.096985					17	12	2	0	0	0	0.18936	1	15101	15101		32.786	6.5175	1	126240			31390	537	18166	18167	38561	38561					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2896728515625	2	584.329673	1166.64479	0.30344	0.00017731	-0.05366	-3.1355E-05	0.24978	0.00014595	584.3295082656317	66.475	0.32287	66.559	66.415	66.738	0.083832					17	11	2	0	0	0	0.21026	1	16642	16642		28.495	8.08	1	108670			31391	537	18166	18167	38562	38562					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3304443359375	2	584.329673	1166.64479	0.45217	0.00026421	-0.86733	-0.00050681	-0.41516	-0.00024259	584.3299631635967	53.786	2.1403	53.777	53.377	55.517	-0.0096054					290	78	6	0	0	0	2.4074E-11	6	12735	12643;12688;12735;12782;12833;13044		195.45	80.803	1	102670000			31392	537	18166	18167	38563;38564;38565;38566;38567;38568	38565					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3302001953125	2	584.329673	1166.64479	0.63881	0.00037328	-0.12055	-7.0442E-05	0.51826	0.00030284	584.3299950142787	55.87	0.75527	55.85	55.484	56.239	-0.019081					42	27	2	0	0	0	0.003673	2	13412	13352;13412		96.936	37.663	1	480230			31393	537	18166	18167	38569;38570	38570					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.345703125	2	584.329673	1166.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.28	1	102.28	101.78	102.78	-0.0033646								0	0	0	0.21673	1	27259	27259		17.113	4.0704	1				31394	537	18166	18167	38571	38571					0.06813693777053231
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3427124023438	2	584.329673	1166.64479	0.64879	0.00037911	-0.27707	-0.0001619	0.37172	0.00021721	584.3294154179522	56.451	1.2826	56.432	56.239	57.522	-0.019077					71	46	2	0	0	0	0.042824	1	13533	13533		75.761	31.903	1	611650			31395	537	18166	18167	38572	38572					0.06813693777053231
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.82177734375	2	584.821681	1167.62881	0.31272	0.00018289	-0.37938	-0.00022187	-0.066655	-3.8981E-05	584.821313760149	69.029	0.6953	69.029	68.76	69.455	0					56	24	3	0	0	0	0.080952	1	17484	17484		64.927	38.659	1	523880			31396	1712	18167	18168	38573	38573					0.05169987540148213
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.8215942382812	2	584.821681	1167.62881	0.35896	0.00020993	-0.38045	-0.0002225	-0.021491	-1.2568E-05	584.8212923289177	68.99	0.68364	69.062	68.781	69.465	0.071938					55	24	3	0	0	0	0.003929	3	17429	17412;17429;17462		94.909	58.782	1	530470			31397	1712	18167	18168	38574;38575;38576	38575					0.05169987540148213
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8212890625	2	584.821681	1167.62881	0.31332	0.00018324	-0.19826	-0.00011595	0.11507	6.7294E-05	584.8214268894219	69.062	0.72543	69.043	68.766	69.492	-0.01915					59	25	4	0	0	0	0.0069773	1	17435	17435		100.71	56.85	1	676910			31398	1712	18167	18168	38577	38577					0.05169987540148213
NYIEKNMERF	10	Oxidation (M)	_NYIEKNM(Oxidation (M))ERF_		NYIEKNM(1)ERF		NYIEKNM(43)ERF	0	0	1		nc|ENSG00000117009|O15229-2|KMO	nc|ENSG00000117009|O15229-2|KMO	nc|ENSG00000117009|O15229-2|KMO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.8835754394531	3	453.883572	1358.62889	0.07863	3.5689E-05	-0.052926	-2.4022E-05	0.025704	1.1667E-05	453.88352140530657	30.826	1.1501	30.854	30.409	31.559	0.027946					118	40	4	0	0	0	0.12096	2	5708	5662;5708		43.477	24.333	1	1465200			31399	12670	18168	18169	38578;38579	38579		970			-0.03608380522200605
NYIEKVVAI	9	Unmodified	_NYIEKVVAI_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.8056030273438	2	524.8055	1047.59645	0.47408	0.0002488	-0.63503	-0.00033327	-0.16095	-8.4466E-05	524.8051606739284	55.485	0.98147	55.485	55.148	56.13	0					87	35	4	0	0	0	0.0016712	2	13247	13247;13300		114.2	45.097	1	3748200			31400	3994	18169	18170	38580;38581	38580					0.07455200137133033
NYIEKVVAI	9	Unmodified	_NYIEKVVAI_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8056640625	2	524.8055	1047.59645	0.68427	0.00035911	-0.64621	-0.00033914	0.038053	1.997E-05	524.805120679869	55.426	0.86056	55.497	55.216	56.077	0.070885					82	31	4	0	0	0	0.0028542	2	13217	13217;13264		103.42	38.184	1	4137300			31401	3994	18169	18170	38582;38583	38582					0.07455200137133033
NYIEKVVAI	9	Unmodified	_NYIEKVVAI_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8056640625	2	524.8055	1047.59645	0.56845	0.00029832	-0.87895	-0.00046128	-0.3105	-0.00016295	524.8050427299635	55.601	0.84332	55.582	55.29	56.133	-0.019077					83	30	4	0	0	0	0.0016712	2	13301	13250;13301		114.2	32.311	1	3936300			31402	3994	18169	18170	38584;38585	38585					0.07455200137133033
NYIFIEDIF	9	Unmodified	_NYIFIEDIF_					0	0	0		ENST00000265734.8_1_7:92243010-92243112:-|nuORF	ENST00000265734.8_1_7:92243010-92243112:-|nuORF	ENST00000265734.8_1_7:92243010-92243112:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.8162231445312	2	587.294965	1172.57538	0.27077	0.00015902	-0.35524	-0.00020863	-0.084473	-4.9611E-05	587.2946402132883	67.196	1.5005	67.274	67.068	68.569	0.078041					130	53	3	0	0	0	0.1669	2	17117	17064;17117		28.487	9.2299	1	7658300			31403	9054	18170	18171	38586;38587	38587					-0.004008099623888484
NYIFIEDIF	9	Unmodified	_NYIFIEDIF_					0	0	0		ENST00000265734.8_1_7:92243010-92243112:-|nuORF	ENST00000265734.8_1_7:92243010-92243112:-|nuORF	ENST00000265734.8_1_7:92243010-92243112:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.7745361328125	2	587.294965	1172.57538	0.29997	0.00017617	-1.6844	-0.00098925	-1.3845	-0.00081308	587.2935908699641	70.284	0.69737	70.35	69.91	70.607	0.06604					37	24	2	0	0	0	0.25066	1	17696	17696		11.64	0.81637	1	173350			31404	9054	18170	18171	38588	38588					-0.004008099623888484
NYIFIEDIF	9	Unmodified	_NYIFIEDIF_					0	0	0		ENST00000265734.8_1_7:92243010-92243112:-|nuORF	ENST00000265734.8_1_7:92243010-92243112:-|nuORF	ENST00000265734.8_1_7:92243010-92243112:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.8162841796875	2	587.294965	1172.57538	0.23083	0.00013557	-0.38744	-0.00022754	-0.15661	-9.1974E-05	587.2945470168528	67.326	2.2128	67.31	67.06	69.272	-0.016296					154	75	4	0	0	0	0.24581	1	17104	17104		16.942	5.302	1	9109900			31405	9054	18170	18171	38589	38589					-0.004008099623888484
NYIGISLRI	9	Unmodified	_NYIGISLRI_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.811767578125	2	524.811116	1047.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.468	1	65.468	64.968	65.968	0								0	0	0	0.056144	1	16333	16333		59.052	20.438	1				31406	4132	18171	18172	38590	38590					0.08578022231290561
NYIGLINRI	9	Unmodified	_NYIGLINRI_					0	0	0		ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2;EIF2AK2|p.V125Cfs*48|1|0.22|ENSG00000055332|chr2:37141569-37141569|C/-|frameshift_variant	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2978515625	2	538.316566	1074.61858	0.60279	0.00032449	-2.6016	-0.0014005	-1.9988	-0.001076	538.3151793830696	60.844	2.8667	60.844	60.607	63.474	0					153	106	2	0	0	0	0.0083926	2	14864	14864;14888		81.89	43.916	1	2413900			31407	704	18172	18173	38591;38592	38591					0.08425424605570697
NYIGLINRI	9	Unmodified	_NYIGLINRI_					0	0	0		ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2;EIF2AK2|p.V125Cfs*48|1|0.22|ENSG00000055332|chr2:37141569-37141569|C/-|frameshift_variant	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2980346679688	2	538.316566	1074.61858	0.46164	0.00024851	-3.3848	-0.0018221	-2.9232	-0.0015736	538.3150410152865	60.729	2.0744	60.826	60.639	62.713	0.096985					143	75	2	0	0	0	0.014888	2	14832	14832;14865		71.922	41.286	1	2482100			31408	704	18172	18173	38593;38594	38593					0.08425424605570697
NYIGLINRI	9	Unmodified	_NYIGLINRI_					0	0	0		ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2;EIF2AK2|p.V125Cfs*48|1|0.22|ENSG00000055332|chr2:37141569-37141569|C/-|frameshift_variant	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2967529296875	2	538.316566	1074.61858	0.58302	0.00031385	-2.6591	-0.0014314	-2.076	-0.0011176	538.3150542586955	60.923	1.9931	60.914	60.681	62.674	-0.0094566					131	73	2	0	0	0	0.023967	1	14880	14880		62.573	37.173	1	2993900			31409	704	18172	18173	38595	38595					0.08425424605570697
NYIGLINRI	9	Unmodified	_NYIGLINRI_					0	0	0		ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2;EIF2AK2|p.V125Cfs*48|1|0.22|ENSG00000055332|chr2:37141569-37141569|C/-|frameshift_variant	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2948608398438	2	538.316566	1074.61858	0.37691	0.00020289	-3.4294	-0.0018461	-3.0525	-0.0016432	538.314556318349	60.322	0.15543	60.311	60.168	60.324	-0.011486					9	5	2	0	0	0	0.20167	1	14721	14721		29.082	8.628	1	1007100			31410	704	18172	18173	38596	38596					0.08425424605570697
NYIGSDKYF	9	Unmodified	_NYIGSDKYF_					0	0	0		ENSG00000134339|ENST00000256733|SAA2;ENSG00000173432|ENST00000356524|SAA1;nc|ENSG00000134339|P0DJI9-2|SAA2	ENSG00000134339|ENST00000256733|SAA2	ENSG00000134339|ENST00000256733|SAA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.28857421875	2	553.761289	1105.50803	0.54067	0.0002994	0.14593	8.0809E-05	0.6866	0.00038021	553.7615066835011	48.353	0.47519	48.353	48.131	48.606	0					34	16	3	0	0	0	0.21389	1	11051	11051		19.257	2.3147	1	360210			31411	3776	18173	18174	38597	38597					-0.04050840173340475
NYIGSDKYF	9	Unmodified	_NYIGSDKYF_					0	0	0		ENSG00000134339|ENST00000256733|SAA2;ENSG00000173432|ENST00000356524|SAA1;nc|ENSG00000134339|P0DJI9-2|SAA2	ENSG00000134339|ENST00000256733|SAA2	ENSG00000134339|ENST00000256733|SAA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.2889404296875	2	553.761289	1105.50803	0.53661	0.00029715	0.19619	0.00010864	0.7328	0.0004058	553.7614552221731	48.23	0.38706	48.273	48.121	48.509	0.04332					30	14	3	0	0	0	0.23235	1	11024	11024		21.537	9.0054	1	474380			31412	3776	18173	18174	38598	38598					-0.04050840173340475
NYIISVLNL	9	Unmodified	_NYIISVLNL_					0	0	0		ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF	ENST00000566127.1_1_16:29556504-29560080:-|nuORF	ENST00000566127.1_1_16:29556504-29560080:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.8275146484375	2	524.8055	1047.59645	0.6437	0.00033782	-1.7511	-0.00091897	-1.1074	-0.00058115	525.305349069008	88.678	0.40691	88.678	88.437	88.844	0					24	18	2	0	0	0	0.23749	1	23455	23455		20.415	0	1	57006			31413	11599	18174	18175	38599	38599					0.07455200137133033
NYIISVLNL	9	Unmodified	_NYIISVLNL_					0	0	0		ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF	ENST00000566127.1_1_16:29556504-29560080:-|nuORF	ENST00000566127.1_1_16:29556504-29560080:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8275756835938	2	524.8055	1047.59645	0.54106	0.00028395	-2.2643	-0.0011883	-1.7232	-0.00090437	525.3057103020567	88.54	0.27814	88.629	88.472	88.751	0.089195					17	10	2	0	0	0	0.20521	1	23391	23391		24.882	6.5085	1	85567			31414	11599	18174	18175	38600	38600					0.07455200137133033
NYIKDLNIL	9	Unmodified	_NYIKDLNIL_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3164672851562	2	553.316232	1104.61791	0.36728	0.00020322	-0.16302	-9.02E-05	0.20427	0.00011302	553.3162224195498	62.873	1.8658	62.873	62.476	64.342	0					159	68	5	0	0	0	2.4074E-11	3	15545	15497;15545;15594		195.45	76.557	1	9723800			31415	4075	18175	18176	38601;38602;38603	38602					0.06978585165848017
NYIKDLNIL	9	Unmodified	_NYIKDLNIL_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3163452148438	2	553.316232	1104.61791	0.4334	0.00023981	-0.13013	-7.2005E-05	0.30327	0.0001678	553.3162260142899	62.755	1.9537	62.851	62.52	64.474	0.095722					156	70	5	0	0	0	2.973E-07	3	15492	15492;15542;15778		168.54	65.181	1	9828700			31416	4075	18175	18176	38604;38605;38606	38604					0.06978585165848017
NYIKDLNIL	9	Unmodified	_NYIKDLNIL_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.31640625	2	553.316232	1104.61791	0.26652	0.00014747	-0.010558	-5.8419E-06	0.25596	0.00014163	553.3162823839505	62.888	0.94468	62.88	62.49	63.435	-0.0085526					126	34	5	0	0	0	6.5985E-11	2	15533	15533;15583		181.69	42.552	1	10299000			31417	4075	18175	18176	38607;38608	38607					0.06978585165848017
NYIKDLNIL	9	Unmodified	_NYIKDLNIL_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3163452148438	2	553.316232	1104.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.834	1	63.825	63.325	64.325	-0.0095329								0	0	0	0.11882	1	15822	15822		41.956	9.1699	1				31418	4075	18175	18176	38609	38609					0.06978585165848017
NYIKSLSSF	9	Unmodified	_NYIKSLSSF_					0	0	0		nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant;ENST00000529428.5_1_16:30280378-30291878:-|nuORF;ENST00000566127.1_1_16:29540393-29548932:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF	nc|ENSG00000157106|Q96Q15-3|SMG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3004150390625	2	529.779482	1057.54441	0.49518	0.00026234	-0.13601	-7.2057E-05	0.35917	0.00019028	529.7795160834254	51.776	0.58674	51.776	51.536	52.123	0					55	17	4	0	0	0	0.048637	1	12211	12211		53.404	5.8096	1	2663200			31419	5279;9306	18176	18177	38610	38610					0.017940367233904908
NYIKSLSSF	9	Unmodified	_NYIKSLSSF_					0	0	0		nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant;ENST00000529428.5_1_16:30280378-30291878:-|nuORF;ENST00000566127.1_1_16:29540393-29548932:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF	nc|ENSG00000157106|Q96Q15-3|SMG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.7797241210938	2	529.779482	1057.54441	0.49928	0.00026451	0.022359	1.1846E-05	0.52164	0.00027635	529.7794772198861	52.309	0.74456	52.309	52.023	52.767	0					63	26	3	0	0	0	0.010888	1	12301	12301		78.06	39.446	1	2085800			31420	5279;9306	18176	18177	38611	38611					0.017940367233904908
NYIKSLSSF	9	Unmodified	_NYIKSLSSF_					0	0	0		nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant;ENST00000529428.5_1_16:30280378-30291878:-|nuORF;ENST00000566127.1_1_16:29540393-29548932:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF	nc|ENSG00000157106|Q96Q15-3|SMG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.300537109375	2	529.779482	1057.54441	0.42817	0.00022683	0.22125	0.00011722	0.64942	0.00034405	529.7795356944596	52.21	0.67225	52.26	51.985	52.657	0.050575					64	24	4	0	0	0	0.013404	1	12204	12204		74.2	37.125	1	1906700			31421	5279;9306	18176	18177	38612	38612					0.017940367233904908
NYIKSLSSF	9	Unmodified	_NYIKSLSSF_					0	0	0		nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant;ENST00000529428.5_1_16:30280378-30291878:-|nuORF;ENST00000566127.1_1_16:29540393-29548932:-|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000309865.11_1_16:22482951-22501641:+|nuORF	nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000523028.5_1_16:21892164-21910369:-|nuORF	nc|ENSG00000157106|Q96Q15-3|SMG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.77978515625	2	529.779482	1057.54441	0.36778	0.00019484	0.083661	4.4322E-05	0.45144	0.00023916	529.7793981490025	52.505	1.3468	52.504	52.169	53.516	-0.00081253					82	49	3	0	0	0	5.4053E-05	1	12313	12313		148.27	68.672	1	2174100			31422	5279;9306	18176	18177	38613	38613					0.017940367233904908
NYILCSDTRS	10	Unmodified	_NYILCSDTRS_					0	0	0		ENSG00000141384|ENST00000269142|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.7850952148438	2	586.274238	1170.53392	0.49047	0.00028755	0.94304	0.00055288	1.4335	0.00084043	586.2749637910803	63.53	0.26646	63.522	63.325	63.592	-0.0085526					13	9	2	0	0	0	0.30076	1	15739	15739		22.658	7.8198	1	239640			31423	4373	18177	18178	38614	38614					-0.04452313993374446
NYIMKIHNF	9	Oxidation (M)	_NYIM(Oxidation (M))KIHNF_		NYIM(1)KIHNF		NYIM(180)KIHNF	0	0	1		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.3001098632812	2	598.300059	1194.58556	0.26383	0.00015785	0.71847	0.00042986	0.9823	0.00058771	598.3005081401193	38.443	0.66701	38.443	38.149	38.816	0					55	23	3	0	0	0	6.7091E-11	1	8006	8006		181.33	118.75	1	873680			31424	1663	18178	18179	38615	38615		203			-0.003945255087955957
NYIMKIHNF	9	Oxidation (M)	_NYIM(Oxidation (M))KIHNF_		NYIM(1)KIHNF		NYIM(180)KIHNF	0	0	1		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.30029296875	2	598.300059	1194.58556	0.55607	0.0003327	0.049245	2.9463E-05	0.60532	0.00036216	598.3001614026489	38.368	0.57507	38.458	38.183	38.758	0.090881					55	20	4	0	0	0	6.7091E-11	1	7978	7978		181.33	127.49	1	956060			31425	1663	18178	18179	38616	38616		203			-0.003945255087955957
NYIMKIHNF	9	Oxidation (M)	_NYIM(Oxidation (M))KIHNF_		NYIM(1)KIHNF		NYIM(180)KIHNF	0	0	1		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3004150390625	2	598.300059	1194.58556	0.41667	0.00024929	0.34307	0.00020526	0.75974	0.00045455	598.3002916253282	38.335	0.66012	38.432	38.122	38.782	0.097527					63	23	3	0	0	0	6.7091E-11	1	7961	7961		181.33	118.75	1	880660			31426	1663	18178	18179	38617	38617		203			-0.003945255087955957
NYIPQEPAF	9	Unmodified	_NYIPQEPAF_					0	0	0		MMP21|p.S512Efs*21|1|0.04|ENSG00000154485|chr10:125766838-125766839|-/CTTC|frameshift_variant;ENSG00000154485|ENST00000368808|MMP21	MMP21|p.S512Efs*21|1|0.04|ENSG00000154485|chr10:125766838-125766839|-/CTTC|frameshift_variant	MMP21|p.S512Efs*21|1|0.04|ENSG00000154485|chr10:125766838-125766839|-/CTTC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3143310546875	2	539.763832	1077.51311	1.164	0.00062828	2.3926	0.0012914	3.5566	0.0019197	539.7651895737064	47.167	0.32758	47.221	47.006	47.334	0.054371					19	11	2	0	0	0	0.19839	1	10648	10648		28.487	14.581	1	229850			31427	5133	18179	18180	38618	38618					-0.022545363107155936
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3167114257812	2	622.316566	1242.61858	0.42482	0.00026437	-0.19086	-0.00011877	0.23396	0.0001456	622.3164173090852	77	0.55669	77	76.725	77.282	0					49	20	3	0	0	0	0.097101	1	19817	19817		62.573	62.573	1	424740			31428	1220	18180	18181	38619	38619					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3177490234375	2	622.316566	1242.61858	0.088976	5.5371E-05	0.1996	0.00012421	0.28857	0.00017958	622.316543642918	76.935	0.65263	76.99	76.726	77.378	0.05542					49	22	3	0	0	0	0.11755	1	19792	19792		57.722	37.307	1	384330			31429	1220	18180	18181	38620	38620					0.006974246055506228
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3159790039062	2	622.316566	1242.61858	0.47731	0.00029703	-0.34746	-0.00021623	0.12984	8.0804E-05	622.3163138800888	77.007	0.50817	76.975	76.754	77.262	-0.031334					50	18	3	0	0	0	0.097101	1	19809	19809		53.833	53.833	1	537610			31430	1220	18180	18181	38621	38621					0.006974246055506228
NYIPVKNGKQF	11	Unmodified	_NYIPVKNGKQF_					0	0	0		HIVEP1|p.S2208Qfs*19|1|0.2|ENSG00000095951|chr6:12161570-12161570|C/-|frameshift_variant;ENSG00000095951|ENST00000379388|HIVEP1	HIVEP1|p.S2208Qfs*19|1|0.2|ENSG00000095951|chr6:12161570-12161570|C/-|frameshift_variant	HIVEP1|p.S2208Qfs*19|1|0.2|ENSG00000095951|chr6:12161570-12161570|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.2613830566406	3	436.575067	1306.70337	-0.16064	-7.0129E-05	1.3325	0.00058175	1.1719	0.00051163	436.57551782024103	33.726	0.49917	33.792	33.495	33.995	0.066704					28	17	2	0	0	0	0.32824	1	6511	6511		12.856	3.6122	1	140820			31431	1460	18181	18182	38622	38622					0.062287503515108256
NYIPYLTKL	9	Unmodified	_NYIPYLTKL_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8215942382812	2	562.82115	1123.62775	0.52507	0.00029552	2.295	0.0012917	2.8201	0.0015872	562.8216332945111	64.288	0.78568	64.288	63.941	64.727	0					69	28	4	0	0	0	0.09758	1	16022	16022		38.615	9.5332	1	1943800			31432	8289	18182	18183	38623	38623					0.07087773171224399
NYIPYLTKL	9	Unmodified	_NYIPYLTKL_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3531494140625	2	562.82115	1123.62775	0.51964	0.00029247	1.7673	0.00099465	2.2869	0.0012871	562.8215766996917	64.166	0.84603	64.259	63.927	64.773	0.09288					111	30	6	0	0	0	0.14646	1	15947	15947		43.772	11.467	1	2041600			31433	8289	18182	18183	38624	38624					0.07087773171224399
NYIPYLTKL	9	Unmodified	_NYIPYLTKL_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.3532104492188	2	562.82115	1123.62775	0.47333	0.0002664	1.9685	0.0011079	2.4418	0.0013743	562.8215524375861	64.28	0.79191	64.271	63.99	64.781	-0.0095291					87	28	4	0	0	0	0.1645	1	15976	15976		40.239	5.8375	1	2166700			31434	8289	18182	18183	38625	38625					0.07087773171224399
NYIRITSEI	9	Unmodified	_NYIRITSEI_					0	0	0		ENSG00000089876|ENST00000284690|DHX32;nc|ENSG00000089876|Q7L7V1-2|DHX32	ENSG00000089876|ENST00000284690|DHX32	ENSG00000089876|ENST00000284690|DHX32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.8037719726562	2	554.803488	1107.59242	0.52948	0.00029376	0.2359	0.00013088	0.76539	0.00042464	554.8034517986532	51.138	1.3423	51.138	50.654	51.997	0					109	49	4	0	0	0	1.6536E-07	3	11929	11878;11929;11978		173.69	88.045	1	4214000			31435	1367	18183	18184	38626;38627;38628	38627					0.0429311064342528
NYIRITSEI	9	Unmodified	_NYIRITSEI_					0	0	0		ENSG00000089876|ENST00000284690|DHX32;nc|ENSG00000089876|Q7L7V1-2|DHX32	ENSG00000089876|ENST00000284690|DHX32	ENSG00000089876|ENST00000284690|DHX32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.8037109375	2	554.803488	1107.59242	0.40924	0.00022705	0.23915	0.00013268	0.64838	0.00035973	554.8034750574792	51.129	1.1086	51.175	50.872	51.981	0.046574					103	40	4	0	0	0	4.8913E-11	4	11920	11874;11920;11969;12018		187.3	91.012	1	4786900			31436	1367	18183	18184	38629;38630;38631;38632	38630					0.0429311064342528
NYIRITSEI	9	Unmodified	_NYIRITSEI_					0	0	0		ENSG00000089876|ENST00000284690|DHX32;nc|ENSG00000089876|Q7L7V1-2|DHX32	ENSG00000089876|ENST00000284690|DHX32	ENSG00000089876|ENST00000284690|DHX32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.8036499023438	2	554.803488	1107.59242	0.37702	0.00020917	0.30421	0.00016878	0.68123	0.00037795	554.8034892035888	51.213	1.4225	51.223	50.729	52.151	0.0095634					118	53	4	0	0	0	5.4465E-12	4	11939	11894;11939;11989;12049		201.57	93.571	1	3983900			31437	1367	18183	18184	38633;38634;38635;38636	38634					0.0429311064342528
NYISDPTIL	9	Unmodified	_NYISDPTIL_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.317626953125	2	518.27149	1034.52843	0.59658	0.00030919	-0.40596	-0.0002104	0.19062	9.8793E-05	518.2711528543614	65.856	0.43715	65.944	65.732	66.169	0.088882					23	15	2	0	0	0	0.18123	1	16441	16441		34.402	20.496	1	197600			31438	858	18184	18185	38637	38637					0.012543304864948368
NYISFYDHL	9	Unmodified	_NYISFYDHL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.S1823Wfs*15|1|0.26|ENSG00000124201|chr20:49247550-49247556|AGGCCAG/-|frameshift_variant	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.7846069335938	2	586.274564	1170.53457	0.40789	0.00023913	0.017274	1.0127E-05	0.42516	0.00024926	586.7760406462454	63.476	0.33224	63.476	63.225	63.557	0					15	11	2	0	0	0	0.23784	1	15691	15691		19.257	4.4187	1	238370			31439	3140	18185	18186	38638	38638					-0.043871512820032876
NYISGIQTI	9	Unmodified	_NYISGIQTI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.78436279296875	2	504.771657	1007.52876	0.56839	0.00028691	2.7217	0.0013739	3.2901	0.0016608	504.77197326619074	64.2	0.81796	64.2	63.665	64.483	0					55	29	4	0	0	0	0.12279	1	15914	15914		34.932	2.8151	1	446990			31440	7801	18186	18187	38639	38639					0.025297502063381216
NYISGIQTI	9	Unmodified	_NYISGIQTI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.78436279296875	2	504.771657	1007.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.989	1	64.082	63.582	64.582	0.09288								0	0	0	0.14907	1	15873	15873		34.932	2.8151	1				31441	7801	18186	18187	38640	38640					0.025297502063381216
NYITAALKL	9	Unmodified	_NYITAALKL_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.8004455566406	2	503.800217	1005.58588	0.5756	0.00028999	-0.30105	-0.00015167	0.27455	0.00013832	503.80015130134586	64.191	1.1009	64.191	63.859	64.96	0					94	40	4	0	0	0	1.6536E-07	1	15947	15947		173.69	69.938	1	3567300			31442	4171	18187	18188	38641	38641					0.08331217482702868
NYITAALKL	9	Unmodified	_NYITAALKL_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.8005065917969	2	503.800217	1005.58588	0.46736	0.00023546	-0.20109	-0.00010131	0.26627	0.00013415	503.80019635175705	64.106	1.164	64.199	63.822	64.986	0.09288					109	42	4	0	0	0	4.984E-07	1	15915	15915		160.69	68.198	1	3344000			31443	4171	18187	18188	38642	38642					0.08331217482702868
NYITAALKL	9	Unmodified	_NYITAALKL_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.80047607421875	2	503.800217	1005.58588	0.54316	0.00027364	-0.25657	-0.00012926	0.28659	0.00014439	503.800167316497	64.248	1.0638	64.238	63.91	64.974	-0.0095367					99	38	4	0	0	0	4.984E-07	2	15935	15935;15977		160.69	68.198	1	3306200			31444	4171	18187	18188	38643;38644	38643					0.08331217482702868
NYITIKDFL	9	Unmodified	_NYITIKDFL_					0	0	0		ENST00000537802.5_1_13:111301459-111315833:-|nuORF;ENST00000545506.5_1_13:111299446-111317899:-|nuORF;ENST00000539405.1_1_13:111303270-111319801:-|nuORF;ENST00000540006.5_1_13:111296932-111315941:-|nuORF;ENST00000535398.5_1_13:111298395-111353838:-|nuORF;ENSG00000134905|ENST00000257347|CARS2	ENST00000537802.5_1_13:111301459-111315833:-|nuORF	ENST00000537802.5_1_13:111301459-111315833:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8090209960938	2	563.810782	1125.60701	0.47451	0.00026754	-0.94584	-0.00053327	-0.47133	-0.00026574	563.8098948424125	71.968	0.54613	72.024	71.783	72.329	0.05658					30	19	2	0	0	0	0.064268	1	18335	18335		47.594	11.467	1	188920			31445	3828	18188	18189	38645	38645					0.049231827915718895
NYITIKDFL	9	Unmodified	_NYITIKDFL_					0	0	0		ENST00000537802.5_1_13:111301459-111315833:-|nuORF;ENST00000545506.5_1_13:111299446-111317899:-|nuORF;ENST00000539405.1_1_13:111303270-111319801:-|nuORF;ENST00000540006.5_1_13:111296932-111315941:-|nuORF;ENST00000535398.5_1_13:111298395-111353838:-|nuORF;ENSG00000134905|ENST00000257347|CARS2	ENST00000537802.5_1_13:111301459-111315833:-|nuORF	ENST00000537802.5_1_13:111301459-111315833:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.810782	1125.60701	0.3423	0.00019299	-0.33451	-0.0001886	0.0077908	4.3925E-06	563.809934036005	72.004	0.54941	72.004	71.745	72.295	0	-0.023001	0.00028047	NaN	47.594	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183370			31446	3828	18188	18189							0.049231827915718895
NYITPNPIFF	10	Unmodified	_NYITPNPIFF_					0	0	0		ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.3162841796875	2	613.316232	1224.61791	0.45032	0.00027619	-0.38557	-0.00023648	0.064748	3.9711E-05	613.3161387729053	85.824	0.85764	85.824	85.527	86.385	0					74	31	3	0	0	0	0.093324	4	22540	22530;22540;22594;22603		49.527	38.033	1	790710			31447	4242	18189	18190	38646;38647;38648;38649	38647					0.014585851658239335
NYITPNPIFF	10	Unmodified	_NYITPNPIFF_					0	0	0		ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	613.3161010742188	2	613.316232	1224.61791	0.43403	0.0002662	-0.43554	-0.00026713	-0.0015165	-9.3007E-07	613.3160899278608	85.833	0.99947	85.824	85.43	86.43	-0.0090027					86	37	4	0	0	0	0.076018	1	22546	22546		53.317	37.168	1	900540			31448	4242	18189	18190	38650	38650					0.014585851658239335
NYITPNPIFF	10	Unmodified	_NYITPNPIFF_					0	0	0		ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	613.316232	1224.61791	0.38393	0.00023547	-0.68854	-0.00042229	-0.30461	-0.00018682	613.315968577829	85.747	0.82719	85.832	85.542	86.369	0.084251	0.0051125	-0.00025043	NaN	53.317	78	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	789680			31449	4242	18189	18190							0.014585851658239335
NYIYSISVF	9	Unmodified	_NYIYSISVF_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8302612304688	2	553.281857	1104.54916	0.32094	0.00017757	1.267	0.00070099	1.5879	0.00087856	553.2823756840195	81.297	0.82776	81.297	81.016	81.844	0					67	35	3	0	0	0	0.16853	1	21161	21161		31.268	16.43	1	604590			31450	4023	18190	18191	38651	38651					0.001069208661419907
NYIYSISVF	9	Unmodified	_NYIYSISVF_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8302001953125	2	553.281857	1104.54916	0.078188	4.326E-05	1.8163	0.0010049	1.8944	0.0010482	553.2824880294341	81.246	0.74373	81.315	81.053	81.797	0.068993					78	36	3	0	0	0	0.16853	1	21128	21128		38.176	12.776	1	716680			31451	4023	18190	18191	38652	38652					0.001069208661419907
NYKDLNGNVF	10	Unmodified	_NYKDLNGNVF_					0	0	0		ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1	ENSG00000124783|ENST00000244763|SSR1	ENSG00000124783|ENST00000244763|SSR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.291015625	2	592.290745	1182.56694	0.37165	0.00022013	-0.086939	-5.1493E-05	0.28472	0.00016863	592.2907305895546	46.585	0.78669	46.585	46.35	47.137	0					64	27	4	0	0	0	8.3317E-09	3	10525	10482;10525;10572		169.92	131.75	1	2739300			31452	3180	18191	18192	38653;38654;38655	38654					-0.017043638790028126
NYKDLNGNVF	10	Unmodified	_NYKDLNGNVF_					0	0	0		ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1	ENSG00000124783|ENST00000244763|SSR1	ENSG00000124783|ENST00000244763|SSR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.2907104492188	2	592.290745	1182.56694	0.43186	0.00025579	-0.4967	-0.00029419	-0.064833	-3.84E-05	592.2904903496957	46.349	0.84145	46.409	46.15	46.992	0.059723					68	30	3	0	0	0	1.0905E-08	3	10451	10404;10451;10497		166.77	128.59	1	2798900			31453	3180	18191	18192	38656;38657;38658	38657					-0.017043638790028126
NYKDLNGNVF	10	Unmodified	_NYKDLNGNVF_					0	0	0		ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1	ENSG00000124783|ENST00000244763|SSR1	ENSG00000124783|ENST00000244763|SSR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.2907104492188	2	592.290745	1182.56694	0.24344	0.00014419	-0.2122	-0.00012568	0.031243	1.8505E-05	592.2906006048763	46.378	1.0664	46.433	46.189	47.256	0.054371					71	37	3	0	0	0	1.1415E-13	4	10444	10401;10444;10496;10551		189.73	151.56	1	2550000			31454	3180	18191	18192	38659;38660;38661;38662	38660					-0.017043638790028126
NYKEERDTI	9	Unmodified	_NYKEERDTI_					0	0	0			REV__nc|ENSG00000173588|Q9Y592-2|CEP83	REV__nc|ENSG00000173588|Q9Y592-2|CEP83	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2861938476562	2	584.28566	1166.55677	-0.29542	-0.00017261	3.369	0.0019685	3.0736	0.0017958	584.2876039184616	60.06	0.48223	60.155	60.019	60.501	0.095089					26	17	2	0	0	0	0.24688	1	14726	14726		14.838	0.93222	1	406740	+		31455	17794	18192	18193	38663	38663					-0.019849716042244836
NYKEFVLF	8	Unmodified	_NYKEFVLF_					0	0	0			REV__ENST00000457761.6_1_2:172821936-172844354:+|nuORF	REV__ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.29638671875	2	530.279118	1058.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.364	1	92.364	91.864	92.864	0.00046539								0	0	0	0.33981	1	24557	24557		19.257	2.1441	1		+		31456	15385	18193	18194	38664	38664					0.01675242074338712
NYKKFYEAF	9	Unmodified	_NYKKFYEAF_					0	0	0		HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;HSP90AB1|p.I483Hfs*7|1|0.32|ENSG00000096384|chr6:44251866-44251867|-/C|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.8694763183594	3	403.86948	1208.58661	0.084607	3.417E-05	0.092559	3.7382E-05	0.17717	7.1552E-05	403.8694547793754	44.983	0.9805	44.983	44.633	45.614	0					90	35	4	0	0	0	0.088443	2	9980	9980;10027		32.037	23.593	1	1450700			31457	1466	18194	18195	38665;38666	38665					-0.00933987868256736
NYKKFYEAF	9	Unmodified	_NYKKFYEAF_					0	0	0		HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;HSP90AB1|p.I483Hfs*7|1|0.32|ENSG00000096384|chr6:44251866-44251867|-/C|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.3005981445312	2	605.300581	1208.58661	0.66139	0.00040034	-0.43612	-0.00026398	0.22527	0.00013635	605.300387011423	44.94	1.0099	44.94	44.684	45.694	0					81	36	3	0	0	0	0.0013683	1	9989	9989		118.07	94.048	1	1063800			31458	1466	18194	18195	38667	38667					-0.00933987868256736
NYKKFYEAF	9	Unmodified	_NYKKFYEAF_					0	0	0		HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;HSP90AB1|p.I483Hfs*7|1|0.32|ENSG00000096384|chr6:44251866-44251867|-/C|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.3004150390625	2	605.300581	1208.58661	0.68868	0.00041686	-0.48012	-0.00029062	0.20856	0.00012624	605.3001215044161	44.402	0.81119	44.471	44.223	45.034	0.068569					76	29	4	0	0	0	0.00045155	2	9842	9814;9842		129.77	95.371	1	1204900			31459	1466	18194	18195	38668;38669	38669					-0.00933987868256736
NYKKFYEAF	9	Unmodified	_NYKKFYEAF_					0	0	0		HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;HSP90AB1|p.I483Hfs*7|1|0.32|ENSG00000096384|chr6:44251866-44251867|-/C|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.869384765625	3	403.86948	1208.58661	0.0066253	2.6758E-06	0.2586	0.00010444	0.26522	0.00010712	403.8694864132183	44.439	1.0329	44.508	44.199	45.232	0.068569					92	37	4	0	0	0	0.088443	2	9826	9826;9873		30.703	22.259	1	1546300			31460	1466	18194	18195	38670;38671	38670					-0.00933987868256736
NYKKFYEAF	9	Unmodified	_NYKKFYEAF_					0	0	0		HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;HSP90AB1|p.I483Hfs*7|1|0.32|ENSG00000096384|chr6:44251866-44251867|-/C|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.3004150390625	2	605.300581	1208.58661	0.42718	0.00025857	-0.24776	-0.00014997	0.17942	0.0001086	605.3003430442694	44.417	0.81596	44.492	44.2	45.016	0.075047					72	29	4	0	0	0	9.2305E-05	4	9811	9800;9811;9862;9913		142.08	100.24	1	1084100			31461	1466	18194	18195	38672;38673;38674;38675	38673					-0.00933987868256736
NYKKFYEAF	9	Unmodified	_NYKKFYEAF_					0	0	0		HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant;HSP90AB1|p.I483Hfs*7|1|0.32|ENSG00000096384|chr6:44251866-44251867|-/C|frameshift_variant;ENSG00000096384|ENST00000371646|HSP90AB1	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.8695068359375	3	403.86948	1208.58661	-0.031452	-1.2703E-05	0.10059	4.0627E-05	0.069142	2.7924E-05	403.86945932026754	44.407	1.0843	44.482	44.174	45.258	0.075047					108	39	4	0	0	0	0.079752	2	9872	9822;9872		32.037	32.037	1	1552100			31462	1466	18194	18195	38676;38677	38677					-0.00933987868256736
NYKKFYEQF	9	Unmodified	_NYKKFYEQF_					0	0	0		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	nc|ENSG00000080824|P07900-2|HSP90AA1	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.87677001953125	3	422.876634	1265.60807	-0.061579	-2.604E-05	-0.021198	-8.9643E-06	-0.082778	-3.5005E-05	422.87679145088987	43.177	2.4523	43.177	42.786	45.238	0					269	89	5	0	0	0	0.041175	6	9439	9395;9439;9485;9533;9583;9634		51.415	35.877	1	16483000			31463	12596	18195	18196	38678;38679;38680;38681;38682;38683	38679					-0.014106028395417525
NYKKFYEQF	9	Unmodified	_NYKKFYEQF_					0	0	0		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	nc|ENSG00000080824|P07900-2|HSP90AA1	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8115844726562	2	633.811313	1265.60807	0.32315	0.00020481	0.13082	8.2917E-05	0.45397	0.00028773	633.8113270264606	43.186	1.6219	43.186	42.786	44.408	0					192	59	5	0	0	0	2.4074E-11	5	9459	9411;9459;9507;9550;9602		195.45	195.45	1	8565500			31464	12596	18195	18196	38684;38685;38686;38687;38688	38685					-0.014106028395417525
NYKKFYEQF	9	Unmodified	_NYKKFYEQF_					0	0	0		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	nc|ENSG00000080824|P07900-2|HSP90AA1	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.8768615722656	3	422.876634	1265.60807	-0.15075	-6.3749E-05	0.032472	1.3732E-05	-0.11828	-5.0017E-05	422.87682986757204	42.515	1.9247	42.601	42.211	44.135	0.085197					239	70	5	0	0	0	0.019245	6	9252	9207;9252;9294;9343;9397;9462		59.368	35.404	1	20238000			31465	12596	18195	18196	38689;38690;38691;38692;38693;38694	38690					-0.014106028395417525
NYKKFYEQF	9	Unmodified	_NYKKFYEQF_					0	0	0		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	nc|ENSG00000080824|P07900-2|HSP90AA1	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.8115234375	2	633.811313	1265.60807	0.30759	0.00019496	-0.049616	-3.1447E-05	0.25798	0.00016351	633.811230435058	42.533	1.5827	42.618	42.266	43.848	0.085201					191	57	5	0	0	0	2.4074E-11	6	9269	9219;9269;9309;9366;9411;9522		195.45	195.45	1	10922000			31466	12596	18195	18196	38695;38696;38697;38698;38699;38700	38696					-0.014106028395417525
NYKKFYEQF	9	Unmodified	_NYKKFYEQF_					0	0	0		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	nc|ENSG00000080824|P07900-2|HSP90AA1	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.38525390625	2	633.811313	1265.60807	0.41207	0.00026117	0.54871	0.00034778	0.96078	0.00060895	633.8112519782346	43.913	0.33768	43.99	43.79	44.128	0.077515					17	12	2	0	0	0	0.24727	1	9631	9631		12.241	10.759	1	228200			31467	12596	18195	18196	38701	38701					-0.014106028395417525
NYKKFYEQF	9	Unmodified	_NYKKFYEQF_					0	0	0		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	nc|ENSG00000080824|P07900-2|HSP90AA1	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.8767395019531	3	422.876634	1265.60807	-0.050319	-2.1279E-05	-0.027299	-1.1544E-05	-0.077618	-3.2823E-05	422.8768046460958	42.407	2.0156	42.498	42.095	44.111	0.091362					255	73	6	0	0	0	0.034444	7	9273	9176;9223;9273;9314;9362;9425;9473		53.404	29.603	1	19378000			31468	12596	18195	18196	38702;38703;38704;38705;38706;38707;38708	38704					-0.014106028395417525
NYKKFYEQF	9	Unmodified	_NYKKFYEQF_					0	0	0		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	nc|ENSG00000080824|P07900-2|HSP90AA1	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8113403320312	2	633.811313	1265.60807	0.43282	0.00027432	-0.16119	-0.00010216	0.27163	0.00017216	633.8111633891436	42.421	2.2839	42.513	42.151	44.434	0.091362					222	83	5	0	0	0	2.4074E-11	6	9231	9186;9231;9280;9332;9386;9516		195.45	195.45	1	9993300			31469	12596	18195	18196	38709;38710;38711;38712;38713;38714	38710					-0.014106028395417525
NYKLLPYN	8	Unmodified	_NYKLLPYN_					0	0	0		ENST00000448051.6_1_19:37935818-37945963:-|nuORF	ENST00000448051.6_1_19:37935818-37945963:-|nuORF	ENST00000448051.6_1_19:37935818-37945963:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2939453125	2	512.776742	1023.53893	-0.092123	-4.7239E-05	-1.9202	-0.00098464	-2.0123	-0.0010319	512.7758753053195	14.74	0.25119	14.674	14.537	14.788	-0.066068					12	8	2	0	0	0	0.34337	1	816	816		5.2307	0.90143	1	30113			31470	10611	18196	18197	38715	38715					0.028103579315711613
NYKLTSITF	9	Unmodified	_NYKLTSITF_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2855834960938	2	543.795132	1085.57571	0.53506	0.00029096	1.52	0.00082659	2.0551	0.0011176	543.7957892233024	58.729	0.37246	58.729	58.595	58.968	0					19	12	2	0	0	0	0.18936	1	14275	14275		32.786	14.651	1	584420			31471	3785	18197	18198	38716	38716					0.036346097574551095
NYKLTSITF	9	Unmodified	_NYKLTSITF_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	543.795132	1085.57571	0.62843	0.00034174	1.2209	0.00066392	1.8493	0.0010057	543.7957675031407	58.546	0.40009	58.638	58.502	58.902	0.091305	-0.075988	-0.00012906	NaN	32.786	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	418570			31472	3785	18197	18198							0.036346097574551095
NYKLTSITF	9	Unmodified	_NYKLTSITF_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.795132	1085.57571	0.6903	0.00037538	1.3765	0.00074853	2.0668	0.0011239	543.7956265813763	58.789	0.45325	58.774	58.631	59.084	-0.014267	0.060599	4.0151E-05	NaN	32.786	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495900			31473	3785	18197	18198							0.036346097574551095
NYKRIFIL	8	Unmodified	_NYKRIFIL_					0	0	0		nc|ENSG00000198022|A6NJ88|SAGE2P	nc|ENSG00000198022|A6NJ88|SAGE2P	nc|ENSG00000198022|A6NJ88|SAGE2P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2661743164062	2	533.824027	1065.6335	0.53511	0.00028565	-0.22878	-0.00012213	0.30632	0.00016352	533.8236201590587	65.599	1.6498	65.587	64.493	66.143	-0.01133					75	59	2	0	0	0	0.32778	1	16208	16208		14.582	5.9884	1	243040			31474	12902	18198	18199	38717	38717					0.1033091647357196
NYKRTVKR	8	Unmodified	_NYKRTVKR_					0	0	0		ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2;ENST00000493633.5_1_6:34494082-34495405:+|nuORF;ENSG00000124507|ENST00000244458|PACSIN1	ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2579345703125	2	532.819807	1063.62506	0.21962	0.00011702	0.13281	7.0766E-05	0.35243	0.00018778	532.8199114060228	28.546	0.5115	28.547	28.294	28.805	0.0004673					32	17	2	0	0	0	0.34319	1	4932	4932		5.7604	5.7604	1	171250			31475	1555	18199	18200	38718	38718					0.09579362556928572
NYKSHHLQL	9	Unmodified	_NYKSHHLQL_					0	0	0		nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3018188476562	2	570.301447	1138.58834	0.20214	0.00011528	0.3201	0.00018255	0.52224	0.00029784	570.3017005227579	21.876	0.58838	21.876	21.601	22.189	0					42	21	3	0	0	0	0.053988	1	2979	2979		51.415	27.395	1	154120			31476	1451	18200	18201	38719	38719					0.024590659403884274
NYKSHHLQL	9	Unmodified	_NYKSHHLQL_					0	0	0		nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.30224609375	2	570.301447	1138.58834	0.39391	0.00022465	0.050307	2.869E-05	0.44422	0.00025334	570.301461584263	21.907	0.59968	21.807	21.498	22.097	-0.10034					36	21	3	0	0	0	0.048871	1	2997	2997		53.317	30.58	1	140200			31477	1451	18200	18201	38720	38720					0.024590659403884274
NYKSHHLQL	9	Unmodified	_NYKSHHLQL_					0	0	0		nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	nc|ENSG00000095485|Q69YN2-2|CWF19L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.302001953125	2	570.301447	1138.58834	0.15821	9.0228E-05	0.77989	0.00044477	0.93811	0.000535	570.3019390444827	21.89	0.54737	21.841	21.604	22.151	-0.049377					39	19	3	0	0	0	0.032589	1	3005	3005		59.368	30.287	1	156960			31478	1451	18200	18201	38721	38721					0.024590659403884274
NYKTLMSL	8	Unmodified	_NYKTLMSL_					0	0	0		nc|ENSG00000170265|Q9UDV7-2|ZNF282;ENSG00000170265|ENST00000610704|ZNF282	nc|ENSG00000170265|Q9UDV7-2|ZNF282	nc|ENSG00000170265|Q9UDV7-2|ZNF282	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2583312988281	2	485.257328	968.500103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.871	1	25.849	25.349	26.349	-0.022238								0	0	0	0.35843	1	4181	4181		10.824	0.64053	1				31479	6436	18201	18202	38722	38722					0.014593093055623285
NYLDQIAKF	9	Unmodified	_NYLDQIAKF_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;KDM5C|p.S116Mfs*20|1|0.63|ENSG00000126012|chrX:53218280-53218281|-/TGAGACTGTAGAGGTCCAAGATCCGCCA|frameshift_variant;KDM5C|p.Q237Hfs*12|1|0.42|ENSG00000126012|chrX:53216104-53216144|TGAGGCCCAGGCCCATCATCTTGGGGCCTGCCCCATAGATC/-|frameshift_variant;KDM5C|p.E433Gfs*4|1|0.49|ENSG00000126012|chrX:53211600-53211600|T/-|frameshift_variant;KDM5C|p.G845Rfs*2|1|0.5|ENSG00000126012|chrX:53197854-53197860|GTAGACC/-|frameshift_variant;KDM5C|p.E886Rfs*49|1|0.59|ENSG00000126012|chrX:53197011-53197011|C/-|frameshift_variant;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;KDM5C|p.H988Tfs*18|1|0.35|ENSG00000126012|chrX:53196705-53196705|G/-|frameshift_variant	nc|ENSG00000012817|Q9BY66-2|KDM5D;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.293212890625	2	556.292756	1110.57096	0.37843	0.00021052	-0.37673	-0.00020957	0.0016929	9.4176E-07	556.2925190801599	65.537	0.83047	65.537	65.268	66.099	0					68	29	3	0	0	0	0.00054549	2	16337	16337;16416		128.57	82.873	1	1616100			31480	455;3253	18202	18203	38723;38724	38723					0.02009725614720992
NYLDQIAKF	9	Unmodified	_NYLDQIAKF_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;KDM5C|p.S116Mfs*20|1|0.63|ENSG00000126012|chrX:53218280-53218281|-/TGAGACTGTAGAGGTCCAAGATCCGCCA|frameshift_variant;KDM5C|p.Q237Hfs*12|1|0.42|ENSG00000126012|chrX:53216104-53216144|TGAGGCCCAGGCCCATCATCTTGGGGCCTGCCCCATAGATC/-|frameshift_variant;KDM5C|p.E433Gfs*4|1|0.49|ENSG00000126012|chrX:53211600-53211600|T/-|frameshift_variant;KDM5C|p.G845Rfs*2|1|0.5|ENSG00000126012|chrX:53197854-53197860|GTAGACC/-|frameshift_variant;KDM5C|p.E886Rfs*49|1|0.59|ENSG00000126012|chrX:53197011-53197011|C/-|frameshift_variant;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;KDM5C|p.H988Tfs*18|1|0.35|ENSG00000126012|chrX:53196705-53196705|G/-|frameshift_variant	nc|ENSG00000012817|Q9BY66-2|KDM5D;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2929077148438	2	556.292756	1110.57096	-0.018425	-1.025E-05	0.031599	1.7579E-05	0.013174	7.3288E-06	556.2927097543134	65.395	0.93871	65.483	64.982	65.921	0.088882					64	25	4	0	0	0	4.216E-07	2	16286	16286;16404		163.69	109.85	1	1698500			31481	455;3253	18202	18203	38725;38726	38725					0.02009725614720992
NYLDQIAKF	9	Unmodified	_NYLDQIAKF_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;KDM5C|p.S116Mfs*20|1|0.63|ENSG00000126012|chrX:53218280-53218281|-/TGAGACTGTAGAGGTCCAAGATCCGCCA|frameshift_variant;KDM5C|p.Q237Hfs*12|1|0.42|ENSG00000126012|chrX:53216104-53216144|TGAGGCCCAGGCCCATCATCTTGGGGCCTGCCCCATAGATC/-|frameshift_variant;KDM5C|p.E433Gfs*4|1|0.49|ENSG00000126012|chrX:53211600-53211600|T/-|frameshift_variant;KDM5C|p.G845Rfs*2|1|0.5|ENSG00000126012|chrX:53197854-53197860|GTAGACC/-|frameshift_variant;KDM5C|p.E886Rfs*49|1|0.59|ENSG00000126012|chrX:53197011-53197011|C/-|frameshift_variant;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;KDM5C|p.H988Tfs*18|1|0.35|ENSG00000126012|chrX:53196705-53196705|G/-|frameshift_variant	nc|ENSG00000012817|Q9BY66-2|KDM5D;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.29296875	2	556.292756	1110.57096	0.28926	0.00016091	-0.12368	-6.8804E-05	0.16558	9.2109E-05	556.2926232472931	65.502	0.74478	65.491	65.227	65.972	-0.011337					56	26	3	0	0	0	0.00054549	1	16317	16317		128.57	84.715	1	1742500			31482	455;3253	18202	18203	38727	38727					0.02009725614720992
NYLDRFLSL	9	Unmodified	_NYLDRFLSL_					0	0	0		ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	ENSG00000110092|ENST00000227507|CCND1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.7899169921875	2	570.806031	1139.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.197	1	78.197	77.697	78.697	0								0	0	0	0.1768	1	20220	20220		28.495	10.348	1				31483	2296	18203	18204	38728	38728					0.03329414506060857
NYLDVKCVGR	10	Unmodified	_NYLDVKCVGR_					0	0	0			REV__nc|ENSG00000147081|Q5JQC9-2|AKAP4	REV__nc|ENSG00000147081|Q5JQC9-2|AKAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.32958984375	2	583.802965	1165.59138	0.56521	0.00032997	-2.6632	-0.0015548	-2.098	-0.0012248	583.8011062650511	54.69	0.29393	54.753	54.54	54.834	0.063202					17	10	2	0	0	0	0.20505	1	12972	12972		39.95	9.7249	1	140050	+		31484	16369	18204	18205	38729	38729					0.015205730028810649
NYLEDIEIF	9	Unmodified	_NYLEDIEIF_					0	0	0		nc|ENSG00000186642|O00408-5|PDE2A;nc|ENSG00000186642|O00408-6|PDE2A;ENST00000539367.5_1_11:72287653-72353469:-|nuORF;nc|ENSG00000186642|O00408-2|PDE2A;nc|ENSG00000186642|O00408-4|PDE2A;nc|ENSG00000186642|O00408-3|PDE2A;ENSG00000186642|ENST00000334456|PDE2A	nc|ENSG00000186642|O00408-5|PDE2A	nc|ENSG00000186642|O00408-5|PDE2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.2916870117188	2	578.282054	1154.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.146	1	88.146	87.646	88.646	0								0	0	0	0.22065	1	23272	23272		15.847	0	1				31485	7633	18205	18206	38730	38730					-0.02153704204670248
NYLHKVQA	8	Unmodified	_NYLHKVQA_					0	0	0			REV__nc|ENSG00000132958|Q6XPS3-4|TPTE2	REV__nc|ENSG00000132958|Q6XPS3-4|TPTE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2655334472656	2	486.766709	971.518865	0.22077	0.00010746	-0.41334	-0.0002012	-0.19258	-9.3739E-05	486.7666104282951	35.632	0.4976	35.719	35.537	36.034	0.086246					28	17	2	0	0	0	0.34247	1	7142	7142		8.5933	8.5933	1	247440	+		31486	22989	18206	18207	38731	38731					0.031966069916279594
NYLHLDYNF	9	Unmodified	_NYLHLDYNF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.7802734375	2	599.780013	1197.54547	0.22729	0.00013632	-0.18327	-0.00010992	0.044014	2.6398E-05	599.7801031938881	65.054	0.7647	65.054	64.781	65.545	0					86	27	4	0	0	0	0.015535	1	16188	16188		76.825	52.151	1	1166200			31487	6781	18207	18208	38732	38732					-0.04539748907723151
NYLHLDYNF	9	Unmodified	_NYLHLDYNF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.7802734375	2	599.780013	1197.54547	0.34206	0.00020516	-0.32746	-0.0001964	0.014609	8.7621E-06	599.7799899028562	64.934	0.8328	65.023	64.714	65.547	0.088882					86	30	4	0	0	0	0.016948	1	16165	16165		74.2	51.463	1	1602300			31488	6781	18207	18208	38733	38733					-0.04539748907723151
NYLHLDYNF	9	Unmodified	_NYLHLDYNF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.7802124023438	2	599.780013	1197.54547	0.099992	5.9973E-05	-0.099153	-5.947E-05	0.00083887	5.0314E-07	599.7801538728125	65.077	1.2009	65.065	64.721	65.922	-0.01133					111	43	4	0	0	0	0.0049827	1	16189	16189		93.938	69.264	1	1686600			31489	6781	18207	18208	38734	38734					-0.04539748907723151
NYLIKEFKI	9	Unmodified	_NYLIKEFKI_					0	0	0			REV__ENSG00000182447|ENST00000327928|OTOL1	REV__ENSG00000182447|ENST00000327928|OTOL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.342529296875	2	584.342249	1166.66995	0.83208	0.00048622	-0.34254	-0.00020016	0.48955	0.00028606	584.3419740450416	56.214	0.83066	56.214	55.992	56.823	0					76	30	4	0	0	0	0.044952	2	13454	13454;13639		54.774	1.1966	1	2674400	+		31490	18197	18208	18209	38735;38736	38735					0.09327748579607942
NYLIKEFKI	9	Unmodified	_NYLIKEFKI_					0	0	0			REV__ENSG00000182447|ENST00000327928|OTOL1	REV__ENSG00000182447|ENST00000327928|OTOL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3421630859375	2	584.342249	1166.66995	0.7979	0.00046624	-0.29502	-0.00017239	0.50287	0.00029385	584.34194850661	56.166	0.96857	56.24	55.962	56.93	0.074261					87	35	4	0	0	0	0.044952	2	13520	13423;13520		54.774	2.5052	1	3973600	+		31491	18197	18208	18209	38737;38738	38738					0.09327748579607942
NYLIKEFKI	9	Unmodified	_NYLIKEFKI_					0	0	0			REV__ENSG00000182447|ENST00000327928|OTOL1	REV__ENSG00000182447|ENST00000327928|OTOL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.79833984375	2	584.342249	1166.66995	0.7979	0.00046624	-0.29502	-0.00017239	0.50287	0.00029385	584.34194850661	56.166	0.96857	56.24	55.962	56.93	0.074261					87	35	4	0	0	0	0.2322	1	13664	13664		20.454	1.1966	1	3973600	+		31492	18197	18208	18209	38739	38739					0.09327748579607942
NYLIKEFKI	9	Unmodified	_NYLIKEFKI_					0	0	0			REV__ENSG00000182447|ENST00000327928|OTOL1	REV__ENSG00000182447|ENST00000327928|OTOL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3427124023438	2	584.342249	1166.66995	1.0007	0.00058477	-0.43492	-0.00025414	0.56581	0.00033063	584.3418689438123	56.515	1.0442	56.496	56.239	57.283	-0.019077					96	37	4	0	0	0	0.057976	1	13533	13533		49.933	6.0747	1	4779600	+		31493	18197	18208	18209	38740	38740					0.09327748579607942
NYLIKEFKI	9	Unmodified	_NYLIKEFKI_					0	0	0			REV__ENSG00000182447|ENST00000327928|OTOL1	REV__ENSG00000182447|ENST00000327928|OTOL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.79833984375	2	584.342249	1166.66995	1.0007	0.00058477	-0.43492	-0.00025414	0.56581	0.00033063	584.3418689438123	56.515	1.0442	56.496	56.239	57.283	-0.019077					96	37	4	0	0	0	0.2322	1	13789	13789		20.454	1.1966	1	4779600	+		31494	18197	18208	18209	38741	38741					0.09327748579607942
NYLKQSKTLF	10	Unmodified	_NYLKQSKTLF_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5678405761719	3	414.567801	1240.68157	0.058241	2.4145E-05	-0.12806	-5.3091E-05	-0.069822	-2.8946E-05	414.567755784054	53.157	0.48134	53.157	52.932	53.414	0					29	17	2	0	0	0	0.33104	1	12507	12507		10.315	5.2677	1	410620			31495	3022	18209	18210	38742	38742					0.07085945602943866
NYLKQSKTLF	10	Unmodified	_NYLKQSKTLF_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	414.567801	1240.68157	0.55729	0.00023103	-0.67006	-0.00027778	-0.11277	-4.675E-05	414.567487255282	53.043	0.81046	53.099	52.854	53.664	0.056259	-0.083337	-0.00021486	NaN	10.315	37	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	596880			31496	3022	18209	18210							0.07085945602943866
NYLKQSKTLF	10	Unmodified	_NYLKQSKTLF_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	414.567801	1240.68157	0.32153	0.00013329	-0.56116	-0.00023264	-0.23963	-9.9345E-05	414.56754475544545	53.3	0.60293	53.29	53.085	53.688	-0.0096092	0.10799	-7.9427E-05	NaN	10.315	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	439890			31497	3022	18209	18210							0.07085945602943866
NYLLESPHRF	10	Unmodified	_NYLLESPHRF_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;PLEKHM1|p.L980Hfs*3|1|0.04|ENSG00000225190|chr17:45439599-45439600|-/TATGC|frameshift_variant;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.8872375488281	3	425.887533	1274.64077	0.18936	8.0648E-05	-0.45799	-0.00019505	-0.26863	-0.00011441	425.88720668676115	44.65	0.71277	44.65	44.383	45.095	0					57	25	3	0	0	0	0.20968	1	9911	9911		31.462	18.589	1	622860			31498	8445	18210	18211	38743	38743					0.01443604283304012
NYLLESPHRF	10	Unmodified	_NYLLESPHRF_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;PLEKHM1|p.L980Hfs*3|1|0.04|ENSG00000225190|chr17:45439599-45439600|-/TATGC|frameshift_variant;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.88720703125	3	425.887533	1274.64077	-0.010873	-4.6308E-06	-0.42009	-0.00017891	-0.43097	-0.00018354	425.8872246122142	44.238	0.62695	44.313	44.122	44.749	0.075047					62	22	4	0	0	0	0.032797	1	9788	9788		62.78	45.337	1	787420			31499	8445	18210	18211	38744	38744					0.01443604283304012
NYLLESPHRF	10	Unmodified	_NYLLESPHRF_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;PLEKHM1|p.L980Hfs*3|1|0.04|ENSG00000225190|chr17:45439599-45439600|-/TATGC|frameshift_variant;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	425.887533	1274.64077	0.073271	3.1205E-05	-0.54686	-0.0002329	-0.47358	-0.00020169	425.88713949955866	44.3	0.53703	44.368	44.174	44.711	0.068569	-0.075612	-0.0001034	NaN	62.78	53	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	685730			31500	8445	18210	18211							0.01443604283304012
NYLNHWNHF	9	Unmodified	_NYLNHWNHF_					0	0	0		ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5242919921875	3	415.524707	1243.55229	0.41642	0.00017303	-0.72606	-0.00030169	-0.30963	-0.00012866	415.5242785025856	46.586	1.2734	46.639	46.326	47.599	0.052574					100	46	4	0	0	0	0.22701	1	10474	10474		23.79	17.166	1	3075700			31501	6171	18211	18212	38745	38745					-0.05974391236486554
NYLNHWNHF	9	Unmodified	_NYLNHWNHF_					0	0	0		ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.5242919921875	3	415.524707	1243.55229	0.23396	9.7217E-05	-0.7794	-0.00032386	-0.54544	-0.00022664	415.52419309932367	46.595	1.2968	46.649	46.326	47.622	0.054371					116	46	4	0	0	0	0.082647	1	10481	10481		45.74	27.877	1	3982100			31502	6171	18211	18212	38746	38746					-0.05974391236486554
NYLNHWNHF	9	Unmodified	_NYLNHWNHF_					0	0	0		ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	415.524707	1243.55229	0.28198	0.00011717	-0.84573	-0.00035142	-0.56375	-0.00023425	415.52391874003666	46.953	1.096	46.953	46.675	47.771	0	0.20607	-0.00011485	NaN	45.74	103	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4131500			31503	6171	18211	18212							-0.05974391236486554
NYLPFIMEL	9	Oxidation (M)	_NYLPFIM(Oxidation (M))EL_		NYLPFIM(1)EL		NYLPFIM(110)EL	0	0	1		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.29150390625	2	578.291368	1154.56818	0.39784	0.00023007	0.14734	8.5206E-05	0.54518	0.00031527	578.2913974531065	88.212	0.76639	88.212	88.002	88.768	0					75	38	2	0	0	0	0.0039377	1	23315	23315		107.19	78.7	1	582320			31504	2749	18212	18213	38747	38747		347			-0.0029186583444698044
NYLPFIMEL	9	Oxidation (M)	_NYLPFIM(Oxidation (M))EL_		NYLPFIM(1)EL		NYLPFIM(110)EL	0	0	1		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2916870117188	2	578.291368	1154.56818	0.38982	0.00022543	0.27978	0.00016179	0.6696	0.00038722	578.2914672041416	88.148	0.85565	88.238	87.973	88.829	0.089195					77	40	2	0	0	0	0.0016361	2	23275	23233;23275		114.65	91.501	1	638660			31505	2749	18212	18213	38748;38749	38749		347			-0.0029186583444698044
NYLPQISHL	9	Unmodified	_NYLPQISHL_					0	0	0		nc|ENSG00000063761|Q86TW2-3|ADCK1;ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2591552734375	2	542.792924	1083.57129	0.56368	0.00030596	0.30306	0.0001645	0.86674	0.00047046	542.7929649495536	56.869	0.48246	56.869	56.555	57.038	0					22	17	2	0	0	0	0.24993	1	13620	13620		13.042	5.7532	1	200350			31506	779	18213	18214	38750	38750					0.032851453345756454
NYLPQSREKII	11	Unmodified	_NYLPQSREKII_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2357482910156	3	454.257626	1359.75105	0.2106	9.5668E-05	0.31508	0.00014313	0.52569	0.0002388	454.257934590338	30.395	0.33965	30.395	30.309	30.648	0					18	11	2	0	0	0	0.3322	1	5624	5624		2.6312	0	1	98791			31507	7854	18214	18215	38751	38751					0.08556404551723062
NYLRLLKP	8	Unmodified	_NYLRLLKP_					0	0	0			REV__ENSG00000164597|ENST00000297135|COG5	REV__ENSG00000164597|ENST00000297135|COG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.77435302734375	2	508.816202	1015.61785	0.48888	0.00024875	-0.12766	-6.4957E-05	0.36122	0.00018379	508.8162470991743	45.463	0.76347	45.522	44.97	45.734	0.059834					42	26	2	0	0	0	0.34131	1	10181	10181		12.532	7.7755	1	101750	+		31508	17167	18215	18216	38752	38752					0.11066629956519591
NYLRYYELL	9	Unmodified	_NYLRYYELL_					0	0	0			REV__ENSG00000102837|ENST00000219022|OLFM4	REV__ENSG00000102837|ENST00000219022|OLFM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.5242919921875	3	416.220401	1245.63937	0.51811	0.00021565	-1.1501	-0.0004787	-0.63201	-0.00026305	416.22052208272896	46.841	1.4234	46.895	46.574	47.998	0.054371					175	51	5	0	0	0	0.25123	1	10481	10481		8.1555	3.2585	1	23664000	+		31509	14335	18216	18217	38753	38753					0.02637970194564332
NYLSDKLFR	9	Unmodified	_NYLSDKLFR_					0	0	0			REV__ENST00000470633.1_1_3:186790600-186791216:+|nuORF	REV__ENST00000470633.1_1_3:186790600-186791216:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3002319335938	2	578.31148	1154.60841	0.10396	6.012E-05	0.51936	0.00030035	0.62332	0.00036047	578.3115950679745	33.467	0.88414	33.533	33.215	34.099	0.0667					101	31	5	0	0	0	0.28128	1	6518	6518		11.64	0.14559	1	1242300	+		31510	13782	18217	18218	38754	38754					0.03728816880334307
NYLSFTLTM	9	Oxidation (M)	_NYLSFTLTM(Oxidation (M))_		NYLSFTLTM(1)		NYLSFTLTM(64)	0	0	1		ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.749267578125	2	553.26535	1104.51615	0.41997	0.00023236	-1.5159	-0.00083868	-1.0959	-0.00060632	553.2643096043121	72.985	0.72218	72.985	72.613	73.335	0					35	24	2	0	0	0	0.075356	1	18672	18672		63.961	33.324	1	196830			31511	4064	18218	18219	38755	38755		516			-0.03193029248222956
NYLSFTLTM	9	Oxidation (M)	_NYLSFTLTM(Oxidation (M))_		NYLSFTLTM(1)		NYLSFTLTM(68)	0	0	1		ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7493286132812	2	553.26535	1104.51615	0.3341	0.00018485	-1.5465	-0.00085565	-1.2124	-0.0006708	553.2642943712776	72.986	0.70989	73.04	72.737	73.447	0.053833					39	25	2	0	0	0	0.067763	1	18617	18617		67.838	37.202	1	175450			31512	4064	18218	18219	38756	38756		516			-0.03193029248222956
NYLSFTLTM	9	Oxidation (M)	_NYLSFTLTM(Oxidation (M))_		NYLSFTLTM(1)		NYLSFTLTM(130)	0	0	1		ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.2508544921875	2	553.26535	1104.51615	0.44301	0.0002451	-1.7497	-0.00096804	-1.3067	-0.00072294	553.2641156583682	73.106	0.76759	73.076	72.657	73.425	-0.029305					43	27	2	0	0	0	0.00019464	1	18646	18646		133.05	89.194	1	174980			31513	4064	18218	18219	38757	38757		516			-0.03193029248222956
NYLSHHLTI	9	Unmodified	_NYLSHHLTI_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;ENSG00000172239|ENST00000306846|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2908935546875	2	549.290548	1096.56654	0.36873	0.00020254	0.025271	1.3881E-05	0.394	0.00021642	549.2903977711903	41.742	1.5156	41.742	41.355	42.871	0					101	59	3	0	0	0	0.00070271	4	9021	8967;8978;9021;9069		126.57	67.887	1	4925800			31514	6614	18219	18220	38758;38759;38760;38761	38760					0.022122611917893664
NYLSHHLTI	9	Unmodified	_NYLSHHLTI_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;ENSG00000172239|ENST00000306846|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2900390625	2	549.290548	1096.56654	0.36351	0.00019967	-0.16475	-9.0496E-05	0.19876	0.00010918	549.290353408131	41.345	0.62951	41.435	41.029	41.658	0.090252					62	23	4	0	0	0	2.942E-07	2	8856	8856;8898		168.66	117.8	1	4444300			31515	6614	18219	18220	38762;38763	38762					0.022122611917893664
NYLSHHLTI	9	Unmodified	_NYLSHHLTI_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;ENSG00000172239|ENST00000306846|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2907104492188	2	549.290548	1096.56654	0.45938	0.00025233	-0.19229	-0.00010562	0.26709	0.00014671	549.2903140938248	41.258	0.56026	41.355	41.04	41.6	0.096626					56	20	4	0	0	0	6.1526E-05	2	8886	8836;8886		147.06	88.38	1	4999200			31516	6614	18219	18220	38764;38765	38765					0.022122611917893664
NYLSIFRKF	9	Unmodified	_NYLSIFRKF_					0	0	0		ENST00000528165.5_1_11:64977175-64978433:+|nuORF;ENSG00000014216|ENST00000279247|CAPN1	ENST00000528165.5_1_11:64977175-64978433:+|nuORF	ENST00000528165.5_1_11:64977175-64978433:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.7354736328125	2	594.332216	1186.64988	0.66168	0.00039326	-0.9609	-0.0005711	-0.29922	-0.00017784	594.3316509387624	60.867	0.44645	60.964	60.67	61.116	0.096985					24	15	2	0	0	0	0.21538	1	14947	14947		26.268	12.362	1	869640			31517	474	18220	18221	38766	38766					0.06401997639636647
NYLSIFRKF	9	Unmodified	_NYLSIFRKF_					0	0	0		ENST00000528165.5_1_11:64977175-64978433:+|nuORF;ENSG00000014216|ENST00000279247|CAPN1	ENST00000528165.5_1_11:64977175-64978433:+|nuORF	ENST00000528165.5_1_11:64977175-64978433:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7352905273438	2	594.332216	1186.64988	0.54791	0.00032564	-1.1058	-0.00065719	-0.55785	-0.00033155	594.3315292160657	61.013	0.50799	61.003	60.625	61.133	-0.0094566					27	18	2	0	0	0	0.14646	1	14962	14962		36.506	22.6	1	1249500			31518	474	18220	18221	38767	38767					0.06401997639636647
NYLSIYNTF	9	Unmodified	_NYLSIYNTF_					0	0	0			REV__ENST00000594643.1_1_19:48893647-48894615:-|nuORF	REV__ENST00000594643.1_1_19:48893647-48894615:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.777587890625	2	567.776939	1133.53933	0.20908	0.00011871	0.63504	0.00036056	0.84412	0.00047927	567.7772568538929	17.581	0.98173	17.581	17.069	18.051	0					84	33	3	0	0	0	0.34681	1	1788	1788		1.8442	0.36234	1	83175	+		31519	14457	18221	18222	38768	38768					-0.022102671392531192
NYLSVRNRF	9	Unmodified	_NYLSVRNRF_					0	0	0		ENST00000319359.7_1_15:44069169-44069733:-|nuORF	ENST00000319359.7_1_15:44069169-44069733:-|nuORF	ENST00000319359.7_1_15:44069169-44069733:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2717895507812	2	584.814722	1167.61489	0.70895	0.0004146	1.3128	0.00076773	2.0217	0.0011823	584.8159616569199	54.822	0.23801	54.822	54.626	54.864	0					15	8	2	0	0	0	0.1524	1	13011	13011		39.957	23.015	1	219010			31520	9371	18222	18223	38769	38769					0.03778754831705555
NYLVLPNRI	9	Unmodified	_NYLVLPNRI_					0	0	0		nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2;ESYT2|p.V380Sfs*38|1|0.25|ENSG00000117868|chr7:158764784-158764784|C/-|frameshift_variant	nc|ENSG00000117868|A0FGR8-2|ESYT2	nc|ENSG00000117868|A0FGR8-2|ESYT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.32470703125	2	551.324391	1100.63423	0.26383	0.00014546	-0.43602	-0.00024039	-0.17219	-9.4933E-05	551.3243261844134	59.338	1.0645	59.338	58.941	60.006	0					120	37	5	0	0	0	0.00011048	5	14432	14387;14432;14481;14525;14578		139.14	93.118	1	13560000			31521	12676	18223	18224	38770;38771;38772;38773;38774	38771					0.08793711122621062
NYLVLPNRI	9	Unmodified	_NYLVLPNRI_					0	0	0		nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2;ESYT2|p.V380Sfs*38|1|0.25|ENSG00000117868|chr7:158764784-158764784|C/-|frameshift_variant	nc|ENSG00000117868|A0FGR8-2|ESYT2	nc|ENSG00000117868|A0FGR8-2|ESYT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.32470703125	2	551.324391	1100.63423	0.39662	0.00021866	-0.55507	-0.00030602	-0.15845	-8.736E-05	551.3242639033239	59.168	1.1941	59.259	58.849	60.043	0.091301					135	42	5	0	0	0	0.00070271	4	14375	14330;14375;14418;14471		126.57	77.012	1	14711000			31522	12676	18223	18224	38775;38776;38777;38778	38776					0.08793711122621062
NYLVLPNRI	9	Unmodified	_NYLVLPNRI_					0	0	0		nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2;ESYT2|p.V380Sfs*38|1|0.25|ENSG00000117868|chr7:158764784-158764784|C/-|frameshift_variant	nc|ENSG00000117868|A0FGR8-2|ESYT2	nc|ENSG00000117868|A0FGR8-2|ESYT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.3246459960938	2	551.324391	1100.63423	0.5197	0.00028652	-0.64375	-0.00035492	-0.12406	-6.8395E-05	551.3241962065549	59.293	1.1065	59.278	58.917	60.023	-0.014267					111	38	4	0	0	0	0.0013036	4	14410	14367;14410;14454;14500		118.89	72.694	1	13684000			31523	12676	18223	18224	38779;38780;38781;38782	38780					0.08793711122621062
NYLWKVKF	8	Unmodified	_NYLWKVKF_					0	0	0			REV__ENSG00000130477|ENST00000519716|UNC13A	REV__ENSG00000130477|ENST00000519716|UNC13A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2857666015625	2	549.310752	1096.60695	0.49789	0.0002735	-3.4119	-0.0018742	-2.914	-0.0016007	549.3082511876057	48.799	0.30523	48.799	48.665	48.97	0					17	10	2	0	0	0	0.31375	1	11205	11205		26.341	5.8877	1	367760	+		31524	15458	18224	18225	38783	38783					0.06251227582242791
NYMSPFAQF	9	Oxidation (M)	_NYM(Oxidation (M))SPFAQF_		NYM(1)SPFAQF		NYM(73)SPFAQF	0	0	1		ENST00000548721.1_1_12:110974844-110983893:-|nuORF;ENSG00000196850|ENST00000354300|PPTC7	ENST00000548721.1_1_12:110974844-110983893:-|nuORF	ENST00000548721.1_1_12:110974844-110983893:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.7420654296875	2	560.742042	1119.46953	0.29306	0.00016433	-0.14798	-8.2979E-05	0.14508	8.1352E-05	560.7417582243665	67.624	0.5988	67.624	67.398	67.997	0					35	20	2	0	0	0	0.014206	1	17011	17011		72.968	34.817	1	347830			31525	7906	18225	18226	38784	38784		861			-0.08542469079498005
NYNAVFNLL	9	Unmodified	_NYNAVFNLL_					0	0	0		ENSG00000186532|ENST00000305513|SMYD4	ENSG00000186532|ENST00000305513|SMYD4	ENSG00000186532|ENST00000305513|SMYD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.280517578125	2	534.279649	1066.54475	0.76616	0.00040934	0.99143	0.0005297	1.7576	0.00093904	534.2798362121865	83.452	0.68669	83.452	83.148	83.835	0					45	25	2	0	0	0	0.006189	2	21842	21842;21891		85.272	50.87	1	534650			31526	7626	18226	18227	38785;38786	38785					0.014134564432424668
NYNAVFNLL	9	Unmodified	_NYNAVFNLL_					0	0	0		ENSG00000186532|ENST00000305513|SMYD4	ENSG00000186532|ENST00000305513|SMYD4	ENSG00000186532|ENST00000305513|SMYD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2799072265625	2	534.279649	1066.54475	0.49367	0.00026376	1.3848	0.00073986	1.8785	0.0010036	534.2799442015901	83.392	0.66222	83.469	83.187	83.849	0.076294					46	25	2	0	0	0	0.006189	1	21812	21812		85.272	43.432	1	579930			31527	7626	18226	18227	38787	38787					0.014134564432424668
NYNAVFNLL	9	Unmodified	_NYNAVFNLL_					0	0	0		ENSG00000186532|ENST00000305513|SMYD4	ENSG00000186532|ENST00000305513|SMYD4	ENSG00000186532|ENST00000305513|SMYD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2801513671875	2	534.279649	1066.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.527	1	83.51	83.01	84.01	-0.016823								0	0	0	0.0019996	1	21841	21841		92.491	42.558	1				31528	7626	18226	18227	38788	38788					0.014134564432424668
NYNEKIYEL	9	Unmodified	_NYNEKIYEL_					0	0	0		ENST00000466373.1_1_22:19439515-19452862:-|nuORF;nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.2933349609375	2	593.292953	1184.57135	0.69497	0.00041232	0.3764	0.00022331	1.0714	0.00063564	593.2931437879485	47.719	0.44016	47.719	47.468	47.908	0					40	15	3	0	0	0	0.00013073	2	10841	10841;10893		135.86	88.115	1	1382000			31529	914	18227	18228	38789;38790	38789					-0.013548994561006111
NYNEKIYEL	9	Unmodified	_NYNEKIYEL_					0	0	0		ENST00000466373.1_1_22:19439515-19452862:-|nuORF;nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.293212890625	2	593.292953	1184.57135	0.67993	0.0004034	0.10735	6.369E-05	0.78728	0.00046709	593.292977609681	47.624	0.46138	47.672	47.374	47.836	0.04752					50	16	5	0	0	0	6.549E-06	2	10810	10810;10858		155.95	99.777	1	1624900			31530	914	18227	18228	38791;38792	38791					-0.013548994561006111
NYNEKIYEL	9	Unmodified	_NYNEKIYEL_					0	0	0		ENST00000466373.1_1_22:19439515-19452862:-|nuORF;nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	ENST00000466373.1_1_22:19439515-19452862:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.2933349609375	2	593.292953	1184.57135	0.72914	0.00043259	0.19189	0.00011385	0.92104	0.00054644	593.2929698374195	47.609	0.47388	47.653	47.401	47.875	0.043324					42	17	3	0	0	0	6.0404E-05	2	10795	10795;10844		147.24	99.492	1	1516200			31531	914	18227	18228	38793;38794	38793					-0.013548994561006111
NYNLGSFTF	9	Unmodified	_NYNLGSFTF_					0	0	0		ENSG00000120594|ENST00000377252|PLXDC2;nc|ENSG00000120594|Q6UX71-2|PLXDC2;ENST00000377238.2_1_10:20332341-20568745:+|nuORF	ENSG00000120594|ENST00000377252|PLXDC2	ENSG00000120594|ENST00000377252|PLXDC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.817138671875	2	531.748182	1061.48181	0.92647	0.00049265	-0.317	-0.00016857	0.60947	0.00032408	531.7482584193685	77.914	0.34326	77.914	77.719	78.062	0					19	12	2	0	0	0	0.24848	1	20110	20110		9.3831	0	1	153230			31532	2952	18228	18229	38795	38795					-0.046471093448190004
NYNLGSFTF	9	Unmodified	_NYNLGSFTF_					0	0	0		ENSG00000120594|ENST00000377252|PLXDC2;nc|ENSG00000120594|Q6UX71-2|PLXDC2;ENST00000377238.2_1_10:20332341-20568745:+|nuORF	ENSG00000120594|ENST00000377252|PLXDC2	ENSG00000120594|ENST00000377252|PLXDC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.817138671875	2	531.748182	1061.48181	1.0001	0.00053179	-0.037447	-1.9912E-05	0.96263	0.00051187	531.7479579233135	77.919	0.41389	77.888	77.679	78.093	-0.030426					27	14	3	0	0	0	0.22674	1	20119	20119		17.113	7.7298	1	141350			31533	2952	18228	18229	38796	38796					-0.046471093448190004
NYNNQSSNF	9	Unmodified	_NYNNQSSNF_					0	0	0		nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|541|494.37|0.0|25.56|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000444886.1_1_9:128358610-128358904:+|nuORF;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000411857.2_1_1:179425361-179425934:-|nuORF;ENSG00000224578|ENST00000565308|HNRNPA1L3	nc|ENSG00000135486|P09651-3|HNRNPA1	nc|ENSG00000135486|P09651-3|HNRNPA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.274658203125	2	544.225602	1086.43665	0.52731	0.00028698	0.67958	0.00036985	1.2069	0.00065682	544.2257853560667	30.464	0.66343	30.464	30.225	30.889	0					52	23	3	0	0	0	0.0032517	1	5579	5579		114.19	97.074	1	736480			31534	131	18229	18230	38797	38797					-0.10310959877983805
NYNNQSSNF	9	Unmodified	_NYNNQSSNF_					0	0	0		nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|541|494.37|0.0|25.56|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000444886.1_1_9:128358610-128358904:+|nuORF;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000411857.2_1_1:179425361-179425934:-|nuORF;ENSG00000224578|ENST00000565308|HNRNPA1L3	nc|ENSG00000135486|P09651-3|HNRNPA1	nc|ENSG00000135486|P09651-3|HNRNPA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2747192382812	2	544.225602	1086.43665	0.63607	0.00034617	0.62942	0.00034255	1.2655	0.00068872	544.2257755131806	30.473	0.73558	30.501	30.274	31.009	0.027946					55	25	4	0	0	0	0.0060093	1	5569	5569		103.82	96.534	1	680550			31535	131	18229	18230	38798	38798					-0.10310959877983805
NYNNQSSNF	9	Unmodified	_NYNNQSSNF_					0	0	0		nc|ENSG00000135486|P09651-3|HNRNPA1;chr12:54282662-54282800|541|494.37|0.0|25.56|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000135486|ENST00000340913|HNRNPA1;ENST00000444886.1_1_9:128358610-128358904:+|nuORF;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000411857.2_1_1:179425361-179425934:-|nuORF;ENSG00000224578|ENST00000565308|HNRNPA1L3	nc|ENSG00000135486|P09651-3|HNRNPA1	nc|ENSG00000135486|P09651-3|HNRNPA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.274658203125	2	544.225602	1086.43665	0.33748	0.00018367	0.76654	0.00041717	1.104	0.00060084	544.2258441681743	30.446	0.6124	30.473	30.281	30.893	0.027157					55	21	4	0	0	0	0.0032517	1	5574	5574		114.19	92.44	1	645030			31536	131	18229	18230	38799	38799					-0.10310959877983805
NYNPAQQAF	9	Unmodified	_NYNPAQQAF_					0	0	0		nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7799072265625	2	526.743431	1051.47231	0.39051	0.0002057	-0.47474	-0.00025006	-0.084227	-4.4366E-05	526.7430885589068	47.133	0.39173	47.186	47.014	47.405	0.052574					17	14	2	0	0	0	0.25066	1	10738	10738		11.64	2.2929	1	183130			31537	2370	18230	18231	38800	38800					-0.05136877630343406
NYPDEFTKL	9	Unmodified	_NYPDEFTKL_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-3|NF1;nc|ENSG00000196712|P21359-5|NF1;NF1|p.R1534Hfs*40|1|0.38|ENSG00000196712|chr17:31261734-31261734|G/-|frameshift_variant;ENST00000495910.6_1_17:29490228-29576996:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.774169921875	2	563.774396	1125.53424	0.29309	0.00016524	-0.90241	-0.00050876	-0.60933	-0.00034352	563.7742287390867	51.697	0.59267	51.697	51.456	52.049	0					34	21	2	0	0	0	0.05849	1	12077	12077		49.742	17.436	1	904190			31538	7899	18231	18232	38801	38801					-0.02350571001852586
NYPDEFTKL	9	Unmodified	_NYPDEFTKL_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-3|NF1;nc|ENSG00000196712|P21359-5|NF1;NF1|p.R1534Hfs*40|1|0.38|ENSG00000196712|chr17:31261734-31261734|G/-|frameshift_variant;ENST00000495910.6_1_17:29490228-29576996:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.774658203125	2	563.774396	1125.53424	0.37805	0.00021313	-0.39906	-0.00022498	-0.021009	-1.1844E-05	563.774561926223	51.639	0.52699	51.686	51.454	51.981	0.046574					30	18	2	0	0	0	0.016948	2	12070	12054;12070		68.76	36.454	1	1117200			31539	7899	18231	18232	38802;38803	38803					-0.02350571001852586
NYPDEFTKL	9	Unmodified	_NYPDEFTKL_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-3|NF1;nc|ENSG00000196712|P21359-5|NF1;NF1|p.R1534Hfs*40|1|0.38|ENSG00000196712|chr17:31261734-31261734|G/-|frameshift_variant;ENST00000495910.6_1_17:29490228-29576996:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7744750976562	2	563.774396	1125.53424	0.1048	5.9081E-05	-0.8242	-0.00046466	-0.7194	-0.00040558	563.7744057694283	51.816	0.64378	51.815	51.602	52.246	-0.00081253					45	23	3	0	0	0	0.038672	1	12113	12113		57.108	24.802	1	1003100			31540	7899	18231	18232	38804	38804					-0.02350571001852586
NYPDNVVFKF	10	Unmodified	_NYPDNVVFKF_					0	0	0		ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.8114013671875	2	621.811313	1241.60807	0.52121	0.0003241	-0.3552	-0.00022087	0.16601	0.00010323	621.8110661270132	64.446	0.64735	64.446	64.079	64.727	0					58	23	3	0	0	0	3.4096E-05	2	15998	15998;16047		135.72	106.64	1	3694300			31541	6735	18232	18233	38805;38806	38805					-0.003066028395323883
NYPDNVVFKF	10	Unmodified	_NYPDNVVFKF_					0	0	0		ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.811279296875	2	621.811313	1241.60807	0.2496	0.0001552	-0.12592	-7.8299E-05	0.12367	7.6902E-05	621.8111703303624	64.382	0.70729	64.475	64.066	64.773	0.09288					61	25	3	0	0	0	2.2521E-05	2	16007	15958;16007		142.92	102.97	1	3736400			31542	6735	18232	18233	38807;38808	38808					-0.003066028395323883
NYPDNVVFKF	10	Unmodified	_NYPDNVVFKF_					0	0	0		ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.8114013671875	2	621.811313	1241.60807	0.38627	0.00024019	-0.25532	-0.00015876	0.13096	8.1429E-05	621.8111366191489	64.448	0.70748	64.438	64.045	64.752	-0.0095291					62	25	3	0	0	0	0.00091629	2	15985	15985;16031		121.93	99.193	1	3932800			31543	6735	18232	18233	38809;38810	38809					-0.003066028395323883
NYPDNVVFKF	10	Unmodified	_NYPDNVVFKF_					0	0	0		ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.7353515625	2	621.811313	1241.60807	0.32083	0.00019949	-0.33846	-0.00021046	-0.017632	-1.0964E-05	621.8111924719611	65.696	1.4041	65.685	65.288	66.692	-0.01133					96	50	3	0	0	0	0.31701	1	16600	16600		12.241	12.241	1	996170			31544	6735	18232	18233	38811	38811					-0.003066028395323883
NYPETLGRLLI	11	Unmodified	_NYPETLGRLLI_					0	0	0		SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant;SEC14L1|p.V620Efs*51|1|0.16|ENSG00000129657|chr17:77212192-77212193|-/TCTGAAAAAG|frameshift_variant;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.8668212890625	2	644.86662	1287.71869	0.4162	0.00026839	-0.42791	-0.00027594	-0.011704	-7.5475E-06	644.8665782230514	70.186	1.2897	70.186	69.673	70.963	0					119	46	4	0	0	0	1.3918E-12	6	17778	17687;17731;17778;17826;17946;17998		160.97	127.52	1	6275600			31545	3434	18233	18234	38812;38813;38814;38815;38816;38817	38814					0.08633617148734629
NYPETLGRLLI	11	Unmodified	_NYPETLGRLLI_					0	0	0		SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant;SEC14L1|p.V620Efs*51|1|0.16|ENSG00000129657|chr17:77212192-77212193|-/TCTGAAAAAG|frameshift_variant;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.8668212890625	2	644.86662	1287.71869	0.39616	0.00025547	-0.40915	-0.00026385	-0.012993	-8.3788E-06	644.8665500679829	70.118	1.406	70.184	69.717	71.123	0.066048					135	50	5	0	0	0	5.17E-09	5	17764	17678;17720;17764;17807;17949		150.06	112.32	1	6455900			31546	3434	18233	18234	38818;38819;38820;38821;38822	38820					0.08633617148734629
NYPETLGRLLI	11	Unmodified	_NYPETLGRLLI_					0	0	0		SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant;SEC14L1|p.V620Efs*51|1|0.16|ENSG00000129657|chr17:77212192-77212193|-/TCTGAAAAAG|frameshift_variant;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	644.8668212890625	2	644.86662	1287.71869	0.42414	0.00027351	-0.5197	-0.00033514	-0.09556	-6.1624E-05	644.8665528098899	70.19	1.4047	70.168	69.701	71.106	-0.022087					126	50	4	0	0	0	5.7183E-13	4	17783	17681;17734;17783;17834		172.26	132.02	1	6175300			31547	3434	18233	18234	38823;38824;38825;38826	38825					0.08633617148734629
NYPGLSISL	9	Unmodified	_NYPGLSISL_					0	0	0		ENSG00000104823|ENST00000221418|ECH1;ENST00000600178.5_1_19:39307991-39322412:-|nuORF;ENST00000598707.5_1_19:39306922-39322412:-|nuORF	ENSG00000104823|ENST00000221418|ECH1	ENSG00000104823|ENST00000221418|ECH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.2610778808594	2	482.260925	962.507297	-0.056981	-2.748E-05	0.89132	0.00042985	0.83434	0.00040237	482.2612967963608	73.766	0.5616	73.766	73.468	74.029	0					47	19	3	0	0	0	0.0016361	1	18876	18876		114.65	46.568	1	982120			31548	1920	18234	18235	38827	38827					0.024543651776411934
NYPGLSISL	9	Unmodified	_NYPGLSISL_					0	0	0		ENSG00000104823|ENST00000221418|ECH1;ENST00000600178.5_1_19:39307991-39322412:-|nuORF;ENST00000598707.5_1_19:39306922-39322412:-|nuORF	ENSG00000104823|ENST00000221418|ECH1	ENSG00000104823|ENST00000221418|ECH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.2613525390625	2	482.260925	962.507297	0.18673	9.0052E-05	0.80865	0.00038998	0.99538	0.00048003	482.2612286882844	73.781	0.55188	73.75	73.448	74	-0.030655					45	19	3	0	0	0	0.00014042	2	18848	18848;18919		134.3	56.146	1	948940			31549	1920	18234	18235	38828;38829	38828					0.024543651776411934
NYPGNHWY	8	Unmodified	_NYPGNHWY_					0	0	0			REV__ENSG00000178235|ENST00000674365|SLITRK1	REV__ENSG00000178235|ENST00000674365|SLITRK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.303955078125	2	525.725041	1049.43553	0.17962	9.4432E-05	0.017929	9.4259E-06	0.19755	0.00010386	525.7250227371436	14.506	0.32701	14.44	14.289	14.616	-0.066068					30	11	4	0	0	0	0.34437	1	725	725		0	0	1	158740	+		31550	18027	18235	18236	38830	38830					-0.08721129456216659
NYPGNHWY	8	Unmodified	_NYPGNHWY_					0	0	0			REV__ENSG00000178235|ENST00000674365|SLITRK1	REV__ENSG00000178235|ENST00000674365|SLITRK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	525.725041	1049.43553	0.16807	8.8358E-05	0.06299	3.3116E-05	0.23106	0.00012147	525.7248482611568	14.523	0.3535	14.419	14.238	14.592	-0.10466	-0.001785	6.5895E-05	NaN	0	29	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117240	+		31551	18027	18235	18236							-0.08721129456216659
NYPMHVFAY	9	Unmodified	_NYPMHVFAY_					0	0	0		nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;PAM|p.F927Lfs*11|1|0.07|ENSG00000145730|chr5:103028923-103028924|-/AAATGATAAAGTCAGAAGG|frameshift_variant;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM;PAM|p.L580Cfs*5|1|0.35|ENSG00000145730|chr5:103005161-103005161|T/-|frameshift_variant	nc|ENSG00000145730|P19021-2|PAM	nc|ENSG00000145730|P19021-2|PAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7506103515625	2	571.260402	1140.50625	0.10743	6.1372E-05	-0.084076	-4.803E-05	0.023357	1.3343E-05	571.2602966081033	34.024	0.69873	34.091	33.852	34.55	0.066704					43	24	3	0	0	0	0.26145	1	6595	6595		2.0598	0	1	214670			31552	4669	18236	18237	38831	38831					-0.05838172462927105
NYPQSVPRL	9	Unmodified	_NYPQSVPRL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000574308.1_1_17:1371595-1373510:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.291015625	2	537.290548	1072.56654	0.49333	0.00026506	0.25166	0.00013521	0.74498	0.00040027	537.2907780848069	44.179	1.3352	44.179	43.467	44.802	0					139	48	4	0	0	0	0.013404	1	9817	9817		74.2	36.024	1	2070500			31553	8008	18237	18238	38832	38832					0.03316261191821468
NYPQSVPRL	9	Unmodified	_NYPQSVPRL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000574308.1_1_17:1371595-1373510:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2908935546875	2	537.290548	1072.56654	0.43344	0.00023288	0.38377	0.0002062	0.81721	0.00043908	537.2908157778697	43.922	1.4012	43.999	43.347	44.748	0.077515					125	51	3	0	0	0	0.016571	3	9719	9673;9719;9768		69.338	39.858	1	2018800			31554	8008	18237	18238	38833;38834;38835	38834					0.03316261191821468
NYPQSVPRL	9	Unmodified	_NYPQSVPRL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000574308.1_1_17:1371595-1373510:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.290771484375	2	537.290548	1072.56654	0.50389	0.00027074	0.2064	0.0001109	0.71029	0.00038163	537.2907223526686	43.899	1.2957	43.983	43.41	44.706	0.083996					117	47	3	0	0	0	0.01251	2	9693	9693;9747		75.571	42.126	1	2371200			31555	8008	18237	18238	38836;38837	38836					0.03316261191821468
NYPRMKMEV	9	Unmodified	_NYPRMKMEV_					0	0	0			REV__nc|ENSG00000116147|Q92752-2|TNR	REV__nc|ENSG00000116147|Q92752-2|TNR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.8504638671875	2	584.286094	1166.55763	0.060663	3.5444E-05	1.1818	0.0006905	1.2424	0.00072594	584.2871715481266	61.774	0.9804	61.766	61.297	62.278	-0.0085526					68	35	3	0	0	0	0.24289	1	15194	15194		18.146	3.3081	1	216140	+		31556	14913	18238	18239	38838	38838					-0.018981717605129234
NYPTKPTKK	9	Unmodified	_NYPTKPTKK_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8212280273438	2	538.808574	1075.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.41	1	63.41	62.91	63.91	0								0	0	0	0.18053	1	15703	15703		27.629	6.0918	1				31557	2814	18239	18240	38839	38839					0.06781718368665679
NYQDTIGRL	9	Unmodified	_NYQDTIGRL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7791137695312	2	540.277638	1078.54072	0.58758	0.00031746	-0.093428	-5.0477E-05	0.49415	0.00026698	540.779154330026	45.244	0.92644	45.244	44.739	45.666	0					122	33	6	0	0	0	0.010888	1	10085	10085		78.06	38.103	1	1593700			31558	537	18240	18241	38840	38840					0.00459366949530704
NYQDTIGRL	9	Unmodified	_NYQDTIGRL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.79248046875	2	540.277638	1078.54072	0.56847	0.00030713	-0.29701	-0.00016047	0.27145	0.00014666	540.7791295983819	44.917	0.77096	44.986	44.627	45.397	0.068569					104	27	5	0	0	0	0.11755	1	10001	10001		53.317	31.57	1	1655200			31559	537	18240	18241	38841	38841					0.00459366949530704
NYQDTIGRL	9	Unmodified	_NYQDTIGRL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.792236328125	2	540.277638	1078.54072	0.70853	0.0003828	-0.27905	-0.00015076	0.42948	0.00023204	540.7790252433731	44.932	0.88546	45.007	44.669	45.554	0.07505					92	32	4	0	0	0	0.17696	1	10008	10008		36.506	20.659	1	1234700			31560	537	18240	18241	38842	38842					0.00459366949530704
NYQFVYQNL	9	Unmodified	_NYQFVYQNL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.818115234375	2	594.787838	1187.56112	0.45695	0.00027179	-0.50949	-0.00030304	-0.052547	-3.1255E-05	594.7873383041367	67.645	0.77757	67.645	67.193	67.97	0					40	26	2	0	0	0	0.016005	1	17008	17008		85.642	69.794	1	290450			31561	2086	18241	18242	38843	38843					-0.025154623906473716
NYQFVYQNL	9	Unmodified	_NYQFVYQNL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8186645507812	2	594.787838	1187.56112	0.56685	0.00033715	-0.063399	-3.7709E-05	0.50345	0.00029945	594.7878488554536	67.492	0.51043	67.57	67.354	67.864	0.078041					37	17	3	0	0	0	0.03332	1	16972	16972		78.728	59.471	1	347520			31562	2086	18241	18242	38844	38844					-0.025154623906473716
NYQFVYQNL	9	Unmodified	_NYQFVYQNL_					0	0	0		nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8187866210938	2	594.787838	1187.56112	0.33172	0.0001973	0.466	0.00027717	0.79772	0.00047448	594.7878098416004	67.658	0.58357	67.641	67.357	67.941	-0.016296					41	19	3	0	0	0	0.03332	1	16990	16990		78.728	62.881	1	245410			31563	2086	18241	18242	38845	38845					-0.025154623906473716
NYQGHFHLF	9	Unmodified	_NYQGHFHLF_					0	0	0		ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.7755126953125	2	581.775065	1161.53558	0.46482	0.00027042	0.42764	0.00024879	0.89246	0.00051921	581.7752442453325	48.404	1.5489	48.404	48.077	49.626	0					92	55	2	0	0	0	4.6532E-11	1	11050	11050		188.08	151.95	1	5430100			31564	9133	18242	18243	38846	38846					-0.03872892122444682
NYQGHFHLF	9	Unmodified	_NYQGHFHLF_					0	0	0		ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3772583007812	2	581.775065	1161.53558	0.32119	0.00018686	1.06	0.00061668	1.3812	0.00080354	581.775609511306	49.992	0.80746	49.992	49.626	50.433	0					45	29	2	0	0	0	0.25066	1	11482	11482		11.64	4.0313	1	329020			31565	9133	18242	18243	38847	38847					-0.03872892122444682
NYQGHFHLF	9	Unmodified	_NYQGHFHLF_					0	0	0		ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7754516601562	2	581.775065	1161.53558	0.63828	0.00037134	1.1158	0.00064916	1.7541	0.0010205	582.277186787961	48.076	2.1071	48.123	47.772	49.879	0.04752					240	77	5	0	0	0	4.6532E-11	2	11068	11017;11068		188.08	151.95	1	11964000			31566	9133	18242	18243	38848;38849	38849					-0.03872892122444682
NYQGHFHLF	9	Unmodified	_NYQGHFHLF_					0	0	0		ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.7754516601562	2	581.775065	1161.53558	0.50671	0.00029479	1.3029	0.000758	1.8096	0.0010528	582.2772490384998	48.035	1.8426	48.078	47.771	49.613	0.04332					217	67	5	0	0	0	2.4571E-07	3	11037	10950;10993;11037		170.55	154.46	1	15827000			31567	9133	18242	18243	38850;38851;38852	38852					-0.03872892122444682
NYQKRFQNL	9	Unmodified	_NYQKRFQNL_					0	0	0		nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.2159423828125	3	404.215761	1209.62546	0.10273	4.1526E-05	-0.030728	-1.2421E-05	0.072004	2.9105E-05	404.21573810933785	29.207	1.389	29.207	28.699	30.088	0					153	49	6	0	0	0	0.074552	2	5169	5169;5214		43.772	30.9	1	2393300			31568	746	18243	18244	38853;38854	38853					0.02902737486147089
NYQKRFQNL	9	Unmodified	_NYQKRFQNL_					0	0	0		nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.8206176757812	2	605.820004	1209.62546	0.67565	0.00040932	0.041881	2.5373E-05	0.71753	0.00043469	605.8199603391969	29.223	0.82283	29.223	28.978	29.801	0					77	29	4	0	0	0	9.2305E-05	2	5179	5179;5230		133.7	91.862	1	899710			31569	746	18243	18244	38855;38856	38855					0.02902737486147089
NYQKRFQNL	9	Unmodified	_NYQKRFQNL_					0	0	0		nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2158203125	3	404.215761	1209.62546	-0.13929	-5.6304E-05	0.27018	0.00010921	0.13089	5.2908E-05	404.2158364707849	29.163	1.1761	29.175	28.884	30.06	0.012266					136	40	5	0	0	0	0.074552	2	5186	5141;5186		43.772	30.9	1	2760700			31570	746	18243	18244	38857;38858	38858					0.02902737486147089
NYQKRFQNL	9	Unmodified	_NYQKRFQNL_					0	0	0		nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.8203125	2	605.820004	1209.62546	0.52566	0.00031846	0.086089	5.2154E-05	0.61175	0.00037061	605.820018142065	29.188	0.97254	29.2	28.944	29.917	0.012266					79	33	4	0	0	0	9.2305E-05	3	5203	5156;5203;5251		133.7	95.728	1	999180			31571	746	18243	18244	38859;38860;38861	38860					0.02902737486147089
NYQKRFQNL	9	Unmodified	_NYQKRFQNL_					0	0	0		nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.8203735351562	2	605.820004	1209.62546	0.18566	0.00011248	0.53005	0.00032111	0.71571	0.00043359	605.8202931307194	29.198	0.83833	29.211	28.935	29.773	0.013475					77	29	4	0	0	0	0.0013683	3	5200	5153;5200;5253		120.45	112.59	1	748020			31572	746	18243	18244	38862;38863;38864	38863					0.02902737486147089
NYQLVILSI	9	Unmodified	_NYQLVILSI_					0	0	0		nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1;nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8156127929688	2	531.813325	1061.6121	0.43377	0.00023069	1.3948	0.00074178	1.8286	0.00097246	531.8157162618072	87.445	1.6087	87.532	86.658	88.266	0.087097					99	78	2	0	0	0	0.28674	1	23024	23024		10.824	0.75	1	182500			31573	1744	18244	18245	38865	38865					0.08375486654199449
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8040771484375	2	557.803823	1113.59309	0.25249	0.00014084	0.073989	4.1272E-05	0.32648	0.00018211	557.8037677250892	30.827	0.78018	30.827	30.553	31.333	0					64	27	3	0	0	0	5.6213E-07	1	5714	5714		158.2	127.57	1	685990			31574	4716	18245	18246	38866	38866					0.040839500831452824
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.8038940429688	2	557.803823	1113.59309	0.20268	0.00011306	0.2543	0.00014185	0.45698	0.0002549	557.8038402974369	30.847	0.77509	30.875	30.61	31.385	0.027946					64	27	3	0	0	0	5.6213E-07	1	5718	5718		158.2	127.57	1	595830			31575	4716	18245	18246	38867	38867					0.040839500831452824
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	557.803823	1113.59309	0.10013	5.5854E-05	0.20879	0.00011646	0.30892	0.00017232	557.8038455805049	30.797	0.73731	30.824	30.555	31.292	0.027159	-0.017986	5.8023E-05	NaN	158.2	62	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	752150			31576	4716	18245	18246							0.040839500831452824
NYQTASFLI	9	Unmodified	_NYQTASFLI_					0	0	0		ENSG00000101292|ENST00000678254|PROKR2	ENSG00000101292|ENST00000678254|PROKR2	ENSG00000101292|ENST00000678254|PROKR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2713623046875	2	528.771657	1055.52876	0.59473	0.00031448	4.0754	0.0021549	4.6701	0.0024694	528.775372898778	87.556	1.604	87.551	87.171	88.775	-0.0056229					210	80	3	0	0	0	0.051692	1	23150	23150		52.268	5.3475	1	5007100			31577	1680	18246	18247	38868	38868					0.003217502063534994
NYQVQFVTL	9	Unmodified	_NYQVQFVTL_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2928466796875	2	556.292756	1110.57096	0.22256	0.00012381	0.050114	2.7878E-05	0.27268	0.00015169	556.2926642665436	73.291	0.72422	73.291	72.989	73.713	0					74	25	4	0	0	0	3.6949E-07	2	18704	18704;18755		165.72	121.86	1	1399500			31578	3210	18247	18248	38869;38870	38869					0.020097256147437292
NYQVQFVTL	9	Unmodified	_NYQVQFVTL_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2929077148438	2	556.292756	1110.57096	0.19914	0.00011078	0.00046432	2.583E-07	0.1996	0.00011104	556.292765374064	73.281	1.0604	73.335	72.737	73.797	0.053833					107	29	5	0	0	0	2.4752E-08	3	18695	18682;18695;18747		179.17	135.32	1	1092800			31579	3210	18247	18248	38871;38872;38873	38872					0.020097256147437292
NYQVQFVTL	9	Unmodified	_NYQVQFVTL_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2929077148438	2	556.292756	1110.57096	0.27975	0.00015562	0.068073	3.7868E-05	0.34782	0.00019349	556.2926986655965	73.37	0.72782	73.341	73.042	73.77	-0.029305					86	26	4	0	0	0	3.6949E-07	3	18751	18705;18751;18799		165.72	121.86	1	1320400			31580	3210	18247	18248	38874;38875;38876	38875					0.020097256147437292
NYRDMFHDL	9	Unmodified	_NYRDMFHDL_					0	0	0			REV__nc|ENSG00000135083|Q8IV13-2|CCNJL	REV__nc|ENSG00000135083|Q8IV13-2|CCNJL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.21588134765625	3	404.181841	1209.52369	-0.27645	-0.00011173	0.93497	0.0003779	0.65852	0.00026616	404.18214768348537	29.258	0.55561	29.272	29.009	29.564	0.013474					27	19	2	0	0	0	0.25526	1	5198	5198		4.897	0	1	97401	+		31581	15719	18248	18249	38877	38877					-0.07268876927901147
NYRDTFFNL	9	Unmodified	_NYRDTFFNL_					0	0	0		nc|ENSG00000170340|Q9NY97-2|B3GNT2;ENSG00000170340|ENST00000301998|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.2857666015625	2	595.285463	1188.55637	0.6257	0.00037247	0.12885	7.6701E-05	0.75455	0.00044917	595.285414596665	63.826	0.79722	63.919	63.647	64.445	0.09288					87	28	4	0	0	0	0.035405	1	15843	15843		79.596	41.421	1	1303300			31582	6445	18249	18250	38878	38878					-0.030363465333948625
NYRDTFFNL	9	Unmodified	_NYRDTFFNL_					0	0	0		nc|ENSG00000170340|Q9NY97-2|B3GNT2;ENSG00000170340|ENST00000301998|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.2857666015625	2	595.285463	1188.55637	0.63126	0.00037578	-0.0766	-4.5599E-05	0.55466	0.00033018	595.2853313685248	63.99	0.78084	63.981	63.69	64.471	-0.0095329					97	28	5	0	0	0	0.052436	1	15849	15849		65.474	34.205	1	1692300			31583	6445	18249	18250	38879	38879					-0.030363465333948625
NYRDTFFNL	9	Unmodified	_NYRDTFFNL_					0	0	0		nc|ENSG00000170340|Q9NY97-2|B3GNT2;ENSG00000170340|ENST00000301998|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	595.285463	1188.55637	0.67805	0.00040363	0.050021	2.9777E-05	0.72807	0.00043341	595.2853705397869	63.971	0.7289	63.971	63.695	64.424	0	0.013739	3.5995E-05	NaN	100.71	84	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1505700			31584	6445	18249	18250							-0.030363465333948625
NYRELLLE	8	Unmodified	_NYRELLLE_					0	0	0		nc|ENSG00000112293|P80108-2|GPLD1;ENST00000378243.8_1_6:24473808-24489784:-|nuORF;GPLD1|p.V676Afs*5|1|0.16|ENSG00000112293|chr6:24437283-24437284|-/AGAATTG|frameshift_variant;ENSG00000112293|ENST00000230036|GPLD1	nc|ENSG00000112293|P80108-2|GPLD1	nc|ENSG00000112293|P80108-2|GPLD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2881469726562	2	525.284931	1048.55531	1.0812	0.00056796	1.4808	0.00077784	2.562	0.0013458	525.2872150612884	55.934	1.445	55.934	55.431	56.876	0					144	52	5	0	0	0	0.37937	1	13506	13506		21.747	3.6117	1	9516200			31585	2428	18250	18251	38880	38880					0.03297439097696042
NYRWIRFL	8	Unmodified	_NYRWIRFL_					0	0	0			REV__ENSG00000143158|ENST00000271373|MPC2	REV__ENSG00000143158|ENST00000271373|MPC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.2843627929688	2	584.324725	1166.6349	0.61506	0.0003594	1.2963	0.00075747	1.9114	0.0011169	584.827036072694	74.851	0.41855	74.82	74.613	75.031	-0.031487					30	14	3	0	0	0	0.34092	1	19169	19169		13.508	2.684	1	366720	+		31586	16153	18251	18252	38881	38881					0.05824550562329023
NYRWIRFL	8	Unmodified	_NYRWIRFL_					0	0	0			REV__ENSG00000143158|ENST00000271373|MPC2	REV__ENSG00000143158|ENST00000271373|MPC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	584.324725	1166.6349	0.6644	0.00038823	1.9407	0.001134	2.6051	0.0015222	584.3258941859405	74.834	0.50481	74.834	74.507	75.012	0	0.018004	0.00024233	NaN	13.508	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360630	+		31587	16153	18251	18252							0.05824550562329023
NYRWIRFL	8	Unmodified	_NYRWIRFL_					0	0	0			REV__ENSG00000143158|ENST00000271373|MPC2	REV__ENSG00000143158|ENST00000271373|MPC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	584.324725	1166.6349	0.26959	0.00015753	1.79	0.0010459	2.0595	0.0012034	584.3254733090081	74.741	0.64311	74.793	74.459	75.102	0.052361	-0.022177	6.6197E-05	NaN	13.508	31	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326280	+		31588	16153	18251	18252							0.05824550562329023
NYSDVMSKLGF	11	Oxidation (M)	_NYSDVM(Oxidation (M))SKLGF_		NYSDVM(1)SKLGF		NYSDVM(55)SKLGF	0	0	1		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;REV3L|p.N1558Kfs*2|1|0.35|ENSG00000009413|chr6:111373681-111373682|-/T|frameshift_variant	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.81396484375	2	638.797546	1275.58054	0.62051	0.00039638	0.11863	7.5778E-05	0.73914	0.00047216	638.7976600424752	54.009	0.45086	54.071	53.902	54.352	0.062592					25	16	2	0	0	0	0.042306	1	12809	12809		55.467	37.094	1	305220			31589	407	18252	18253	38882	38882		39			-0.046228741620780056
NYSDVMSKLGF	11	Oxidation (M)	_NYSDVM(Oxidation (M))SKLGF_		NYSDVM(1)SKLGF		NYSDVM(86)SKLGF	0	0	1		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;REV3L|p.N1558Kfs*2|1|0.35|ENSG00000009413|chr6:111373681-111373682|-/T|frameshift_variant	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.8141479492188	2	638.797546	1275.58054	0.75862	0.0004846	-0.24921	-0.00015919	0.50941	0.00032541	638.7976236974811	54.461	0.40722	54.445	54.224	54.631	-0.015923					24	13	2	0	0	0	0.0021533	1	12921	12921		86.276	60.255	1	225730			31590	407	18252	18253	38883	38883		39			-0.046228741620780056
NYSEDFVEL	9	Unmodified	_NYSEDFVEL_					0	0	0		ENST00000525278.1_1_11:89177257-89224483:-|nuORF;nc|ENSG00000086991|Q9NPH5-5|NOX4;nc|ENSG00000086991|Q9NPH5-2|NOX4;nc|ENSG00000086991|Q9NPH5-9|NOX4;nc|ENSG00000086991|Q9NPH5-6|NOX4;nc|ENSG00000086991|Q9NPH5-8|NOX4;ENSG00000086991|ENST00000263317|NOX4	ENST00000525278.1_1_11:89177257-89224483:-|nuORF	ENST00000525278.1_1_11:89177257-89224483:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2980346679688	2	558.248212	1114.48187	0.3106	0.00017339	0.65902	0.00036789	0.96962	0.00054129	558.248623576427	68.317	0.77138	68.317	68.101	68.872	0					61	28	3	0	0	0	0.11234	1	17205	17205		51.63	24.746	1	1285900			31591	1290	18253	18254	38884	38884					-0.07079154135453791
NYSEDFVEL	9	Unmodified	_NYSEDFVEL_					0	0	0		ENST00000525278.1_1_11:89177257-89224483:-|nuORF;nc|ENSG00000086991|Q9NPH5-5|NOX4;nc|ENSG00000086991|Q9NPH5-2|NOX4;nc|ENSG00000086991|Q9NPH5-9|NOX4;nc|ENSG00000086991|Q9NPH5-6|NOX4;nc|ENSG00000086991|Q9NPH5-8|NOX4;ENSG00000086991|ENST00000263317|NOX4	ENST00000525278.1_1_11:89177257-89224483:-|nuORF	ENST00000525278.1_1_11:89177257-89224483:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2976684570312	2	558.248212	1114.48187	0.27406	0.00015299	0.7063	0.00039429	0.98036	0.00054728	558.2486596700345	68.254	0.633	68.326	68.044	68.677	0.071938					58	22	3	0	0	0	0.10058	1	17220	17220		53.833	11.738	1	1217300			31592	1290	18253	18254	38885	38885					-0.07079154135453791
NYSEDFVEL	9	Unmodified	_NYSEDFVEL_					0	0	0		ENST00000525278.1_1_11:89177257-89224483:-|nuORF;nc|ENSG00000086991|Q9NPH5-5|NOX4;nc|ENSG00000086991|Q9NPH5-2|NOX4;nc|ENSG00000086991|Q9NPH5-9|NOX4;nc|ENSG00000086991|Q9NPH5-6|NOX4;nc|ENSG00000086991|Q9NPH5-8|NOX4;ENSG00000086991|ENST00000263317|NOX4	ENST00000525278.1_1_11:89177257-89224483:-|nuORF	ENST00000525278.1_1_11:89177257-89224483:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2980346679688	2	558.248212	1114.48187	0.32811	0.00018317	0.65174	0.00036383	0.97986	0.000547	558.2487077063143	68.351	1.0608	68.332	68.095	69.155	-0.01915					75	37	3	0	0	0	0.11234	1	17202	17202		51.63	17.527	1	1138200			31593	1290	18253	18254	38886	38886					-0.07079154135453791
NYSFADRATA	10	Unmodified	_NYSFADRATA_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2395629882812	2	558.259445	1114.50434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.439	1	65.439	64.939	65.939	0								0	0	0	0.3367	1	16324	16324		20.415	2.2796	1		+		31594	18977	18254	18255	38887	38887					-0.04833509947184211
NYSGAAEYLYF	11	Unmodified	_NYSGAAEYLYF_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.2905883789062	2	649.290411	1296.56627	0.18316	0.00011892	0.12826	8.3276E-05	0.31142	0.0002022	649.2903999337648	75.796	0.74857	75.796	75.503	76.252	0					48	26	2	0	0	0	1.5275E-12	3	19504	19458;19504;19551		159.1	135.31	1	1440800			31595	1887	18255	18256	38888;38889;38890	38889					-0.07015203318724161
NYSGAAEYLYF	11	Unmodified	_NYSGAAEYLYF_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.2904663085938	2	649.290411	1296.56627	0.30635	0.00019891	0.086734	5.6316E-05	0.39308	0.00025523	649.290345853933	75.744	0.91728	75.797	75.48	76.397	0.052475					55	32	2	0	0	0	1.2926E-08	4	19466	19423;19466;19512;19566		139.78	115.99	1	1282400			31596	1887	18255	18256	38891;38892;38893;38894	38892					-0.07015203318724161
NYSGAAEYLYF	11	Unmodified	_NYSGAAEYLYF_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.2904663085938	2	649.290411	1296.56627	0.30996	0.00020125	0.095943	6.2295E-05	0.4059	0.00026355	649.2903632594043	75.819	0.71973	75.788	75.496	76.216	-0.031487					48	25	2	0	0	0	5.008E-18	3	19495	19448;19495;19546		184.36	160.57	1	1775700			31597	1887	18255	18256	38895;38896;38897	38896					-0.07015203318724161
NYSLSYQF	8	Unmodified	_NYSLSYQF_					0	0	0		ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B	ENSG00000115750|ENST00000263663|TAF1B	ENSG00000115750|ENST00000263663|TAF1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8321228027344	2	511.234907	1020.45526	0.4421	0.00022602	-0.1059	-5.4138E-05	0.33621	0.00017188	511.23488280381883	64.743	0.59367	64.743	64.454	65.047	0					35	21	2	0	0	0	0.31442	1	16073	16073		29.841	21.247	1	346830			31598	2672	18256	18257	38898	38898					-0.05414798236131446
NYSLSYQF	8	Unmodified	_NYSLSYQF_					0	0	0		ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B	ENSG00000115750|ENST00000263663|TAF1B	ENSG00000115750|ENST00000263663|TAF1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8321228027344	2	511.234907	1020.45526	0.42654	0.00021806	-0.096263	-4.9213E-05	0.33028	0.00016885	511.23491139063884	64.671	0.56583	64.764	64.445	65.01	0.09288					36	20	2	0	0	0	0.32196	1	16049	16049		15.248	7.3383	1	268570			31599	2672	18256	18257	38899	38899					-0.05414798236131446
NYSLSYQF	8	Unmodified	_NYSLSYQF_					0	0	0		ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-3|TAF1B	ENSG00000115750|ENST00000263663|TAF1B	ENSG00000115750|ENST00000263663|TAF1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.831787109375	2	511.234907	1020.45526	0.30517	0.00015602	-0.033904	-1.7333E-05	0.27127	0.00013868	511.23487549526334	64.808	0.60453	64.798	64.495	65.1	-0.0095291					32	21	2	0	0	0	0.33303	1	16053	16053		21.537	5.6898	1	318630			31600	2672	18256	18257	38900	38900					-0.05414798236131446
NYSNIRFQF	9	Unmodified	_NYSNIRFQF_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.7940063476562	2	594.793455	1187.57236	0.48197	0.00028667	-0.15316	-9.11E-05	0.32881	0.00019557	594.7935092254539	58.813	1.5358	58.813	58.5	60.035	0					175	53	5	0	0	0	3.5809E-25	3	14282	14234;14282;14325		249.11	177.19	1	20805000			31601	4239	18257	18258	38901;38902;38903	38902					-0.01392640296535319
NYSNIRFQF	9	Unmodified	_NYSNIRFQF_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.79345703125	2	594.793455	1187.57236	0.52151	0.00031019	-0.2315	-0.00013769	0.29002	0.0001725	594.793405118188	58.628	1.7011	58.72	58.342	60.043	0.091301					186	60	5	0	0	0	9.0795E-24	3	14205	14158;14205;14250		232.37	178.54	1	18056000			31602	4239	18257	18258	38904;38905;38906	38905					-0.01392640296535319
NYSNIRFQF	9	Unmodified	_NYSNIRFQF_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.7940063476562	2	594.793455	1187.57236	0.48285	0.0002872	-0.097906	-5.8234E-05	0.38494	0.00022896	594.7935725989261	58.922	1.8483	58.908	58.553	60.401	-0.014267					185	65	5	0	0	0	9.0795E-24	2	14308	14260;14308		232.37	178.54	1	22420000			31603	4239	18257	18258	38907;38908	38908					-0.01392640296535319
NYSPVSRIGLF	11	Unmodified	_NYSPVSRIGLF_					0	0	0		ENSG00000140740|ENST00000268379|UQCRC2	ENSG00000140740|ENST00000268379|UQCRC2	ENSG00000140740|ENST00000268379|UQCRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.837890625	2	626.837862	1251.66117	0.51017	0.00031979	-0.51279	-0.00032144	-0.0026248	-1.6454E-06	626.8375960559972	63.699	0.68547	63.699	63.34	64.026	0					44	24	3	0	0	0	0.062106	1	15824	15824		49.742	32.629	1	337730			31604	4332	18258	18259	38909	38909					0.04540774943143333
NYSPVSRIGLF	11	Unmodified	_NYSPVSRIGLF_					0	0	0		ENSG00000140740|ENST00000268379|UQCRC2	ENSG00000140740|ENST00000268379|UQCRC2	ENSG00000140740|ENST00000268379|UQCRC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	626.837862	1251.66117	0.17265	0.00010822	-0.073337	-4.5971E-05	0.099308	6.225E-05	626.8379205651963	63.545	0.56557	63.641	63.365	63.93	0.095722	-0.043218	0.00038769	NaN	49.742	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269760			31605	4332	18258	18259							0.04540774943143333
NYSPVSRIGLF	11	Unmodified	_NYSPVSRIGLF_					0	0	0		ENSG00000140740|ENST00000268379|UQCRC2	ENSG00000140740|ENST00000268379|UQCRC2	ENSG00000140740|ENST00000268379|UQCRC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	626.837862	1251.66117	0.38013	0.00023828	-0.57638	-0.0003613	-0.19625	-0.00012301	626.8377681528036	63.721	0.42675	63.713	63.564	63.99	-0.0085526	0.02855	-0.00024296	NaN	49.742	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290690			31606	4332	18258	18259							0.04540774943143333
NYSPYVNYF	9	Unmodified	_NYSPYVNYF_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.76123046875	2	583.761289	1165.50803	0.3184	0.00018587	-0.18488	-0.00010792	0.13353	7.7948E-05	583.761175160394	68.338	1.9492	68.338	67.997	69.946	0					163	71	3	0	0	0	4.8913000000000006E-24	4	17212	17212;17263;17314;17365		240.41	171.31	1	9490200			31607	5223	18259	18260	38910;38911;38912;38913	38910					-0.0681084017332978
NYSPYVNYF	9	Unmodified	_NYSPYVNYF_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.76123046875	2	583.761289	1165.50803	0.21694	0.00012664	-0.10526	-6.1444E-05	0.11168	6.5195E-05	583.7611758734449	68.292	1.5483	68.364	67.945	69.493	0.071938					154	56	4	0	0	0	4.8913000000000006E-24	5	17178	17132;17178;17227;17278;17352		240.41	171.31	1	8200400			31608	5223	18259	18260	38914;38915;38916;38917;38918	38915					-0.0681084017332978
NYSPYVNYF	9	Unmodified	_NYSPYVNYF_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.7612915039062	2	583.761289	1165.50803	0.39839	0.00023257	-0.24292	-0.00014181	0.15547	9.0756E-05	583.7611089321585	68.355	1.6286	68.336	67.938	69.567	-0.01915					151	58	4	0	0	0	1.1423E-32	5	17203	17158;17203;17246;17290;17360		258.11	189.01	1	8881400			31609	5223	18259	18260	38919;38920;38921;38922;38923	38920					-0.0681084017332978
NYSRNFSSF	9	Unmodified	_NYSRNFSSF_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;ENSG00000133401|ENST00000438447|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2667236328125	2	561.254163	1120.49377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.044	1	42.044	41.544	42.544	0								0	0	0	0.14907	1	9115	9115		34.932	2.6266	1				31610	3710	18260	18261	38924	38924					-0.061654926015989986
NYSRNNITL	9	Unmodified	_NYSRNNITL_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7728881835938	2	547.783087	1093.55162	0.48064	0.00026329	0.14381	7.8779E-05	0.62446	0.00034207	547.7828851160616	26.752	0.41672	26.718	26.438	26.855	-0.033571					29	14	3	0	0	0	0.23007	1	4466	4466		19.257	1.1106	1	153390			31611	5950	18261	18262	38925	38925					0.008587693238041538
NYSRNNITL	9	Unmodified	_NYSRNNITL_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	547.783087	1093.55162	0.48064	0.00026329	0.14381	7.8779E-05	0.62446	0.00034207	547.7828851160616	26.752	0.41672	26.718	26.438	26.855	-0.033571	-0.010084	-0.00024952	NaN	19.257	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153390			31612	5950	18261	18262							0.008587693238041538
NYSRNNITL	9	Unmodified	_NYSRNNITL_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	547.783087	1093.55162	0.67949	0.00037221	0.45369	0.00024852	1.1332	0.00062073	547.783061049424	26.747	0.44548	26.735	26.483	26.928	-0.01156	0.0068844	8.9966E-05	NaN	19.257	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209190			31613	5950	18261	18262							0.008587693238041538
NYSSFQTNQF	10	Unmodified	_NYSSFQTNQF_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.8637084960938	2	618.27001	1234.52547	0.34321	0.00021219	0.18512	0.00011445	0.52832	0.00032665	618.2699457572444	53.995	0.28009	53.979	53.833	54.113	-0.015919					13	9	2	0	0	0	0.21054	1	12791	12791		68.76	54.854	1	192200			31614	6668	18262	18263	38926	38926					-0.08241544638326559
NYSSFQTNQF	10	Unmodified	_NYSSFQTNQF_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	618.27001	1234.52547	0.4422	0.0002734	0.20736	0.0001282	0.64956	0.0004016	618.2701122002748	53.654	0.26506	53.654	53.568	53.834	0	-0.11272	-0.00035881	NaN	68.76	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164140			31615	6668	18262	18263							-0.08241544638326559
NYSTKAKLN	9	Unmodified	_NYSTKAKLN_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3;ZFHX3|p.V2783Afs*6|1|0.37|ENSG00000140836|chr16:72794330-72794334|GGGGA/-|frameshift_variant	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2722778320312	2	519.782556	1037.55056	0.1455	7.5627E-05	0.99872	0.00051912	1.1442	0.00059474	519.7830138555597	16.207	0.29843	16.093	15.921	16.219	-0.11434					15	9	2	0	0	0	0.25526	1	1224	1224		4.3292	0	1	60923			31616	4338	18263	18264	38927	38927					0.0332855495489639
NYSTKAKLN	9	Unmodified	_NYSTKAKLN_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3;ZFHX3|p.V2783Afs*6|1|0.37|ENSG00000140836|chr16:72794330-72794334|GGGGA/-|frameshift_variant	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	519.782556	1037.55056	0.24566	0.00012769	0.66718	0.00034679	0.91284	0.00047448	519.782741871207	16.094	0.32367	16.094	15.918	16.242	0	0.015347	-0.00015477	NaN	4.3292	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72962			31617	4338	18263	18264							0.0332855495489639
NYSTKAKLN	9	Unmodified	_NYSTKAKLN_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3;ZFHX3|p.V2783Afs*6|1|0.37|ENSG00000140836|chr16:72794330-72794334|GGGGA/-|frameshift_variant	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	519.782556	1037.55056	0.21374	0.0001111	1.3415	0.00069728	1.5552	0.00080838	519.7830146065729	16.111	0.23364	16.049	15.943	16.177	-0.062534	-0.029895	0.00054622	NaN	4.3292	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67065			31618	4338	18263	18264							0.0332855495489639
NYSVFYYEI	9	Unmodified	_NYSVFYYEI_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.2777099609375	2	599.276772	1196.53899	0.54767	0.00032821	0.28116	0.00016849	0.82883	0.0004967	599.2769920574029	79.529	0.45488	79.529	79.315	79.77	0					32	17	2	0	0	0	0.0046246	2	20643	20595;20643		89.401	56.615	1	352120			31619	6417	18264	18265	38928;38929	38929					-0.051416868590649756
NYSVFYYEI	9	Unmodified	_NYSVFYYEI_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.2766723632812	2	599.276772	1196.53899	0.58281	0.00034927	0.15825	9.4836E-05	0.74107	0.0004441	599.2768150139192	79.478	0.5449	79.539	79.314	79.859	0.061417					37	21	2	0	0	0	0.0037449	2	20581	20581;20628		96.367	56.417	1	340830			31620	6417	18264	18265	38930;38931	38930					-0.051416868590649756
NYSVFYYEI	9	Unmodified	_NYSVFYYEI_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.7785034179688	2	599.276772	1196.53899	0.48694	0.00029181	-0.063759	-3.8209E-05	0.42318	0.0002536	599.2769947377743	79.6	0.71275	79.572	79.371	80.084	-0.028931					63	26	3	0	0	0	0.0041491	3	20649	20604;20649;20698		93.166	53.216	1	386310			31621	6417	18264	18265	38932;38933;38934	38933					-0.051416868590649756
NYTADYDKAL	10	Unmodified	_NYTADYDKAL_					0	0	0		ENST00000521993.2_1_8:37597892-37607371:+|nuORF;ENSG00000147475|ENST00000519638|ERLIN2;nc|ENSG00000147475|O94905-2|ERLIN2;nc|ENSG00000147475|O94905-3|ERLIN2	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.2748413085938	2	587.274761	1172.53497	0.43636	0.00025626	0.00010171	5.973E-08	0.43646	0.00025632	587.2746992466231	53.019	0.77497	53.019	52.767	53.542	0					63	28	3	0	0	0	0.21126	1	12485	12485		31.268	7.2478	1	1972500			31622	4768	18265	18266	38935	38935					-0.04439776352796798
NYTADYDKAL	10	Unmodified	_NYTADYDKAL_					0	0	0		ENST00000521993.2_1_8:37597892-37607371:+|nuORF;ENSG00000147475|ENST00000519638|ERLIN2;nc|ENSG00000147475|O94905-2|ERLIN2;nc|ENSG00000147475|O94905-3|ERLIN2	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.2747802734375	2	587.274761	1172.53497	0.43265	0.00025408	-0.11635	-6.8332E-05	0.31629	0.00018575	587.2746914053719	53.222	0.74792	53.212	52.863	53.611	-0.0096092					76	27	5	0	0	0	0.33594	1	12523	12523		15.248	15.248	1	1974100			31623	4768	18265	18266	38936	38936					-0.04439776352796798
NYTADYDKAL	10	Unmodified	_NYTADYDKAL_					0	0	0		ENST00000521993.2_1_8:37597892-37607371:+|nuORF;ENSG00000147475|ENST00000519638|ERLIN2;nc|ENSG00000147475|O94905-2|ERLIN2;nc|ENSG00000147475|O94905-3|ERLIN2	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	587.274761	1172.53497	0.43636	0.00025626	0.00010171	5.973E-08	0.43646	0.00025632	587.2746992466231	53.019	0.77497	53.019	52.767	53.542	0	-0.066403	0.00012419	NaN	31.268	63	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1972500			31624	4768	18265	18266							-0.04439776352796798
NYTADYDKAL	10	Unmodified	_NYTADYDKAL_					0	0	0		ENST00000521993.2_1_8:37597892-37607371:+|nuORF;ENSG00000147475|ENST00000519638|ERLIN2;nc|ENSG00000147475|O94905-2|ERLIN2;nc|ENSG00000147475|O94905-3|ERLIN2	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	587.274761	1172.53497	0.57883	0.00033993	-0.22597	-0.00013271	0.35285	0.00020722	587.2746003489893	52.968	0.65446	53.025	52.828	53.482	0.056255	-0.060443	-0.00014135	NaN	31.268	56	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1679600			31625	4768	18265	18266							-0.04439776352796798
NYTADYDKAL	10	Unmodified	_NYTADYDKAL_					0	0	0		ENST00000521993.2_1_8:37597892-37607371:+|nuORF;ENSG00000147475|ENST00000519638|ERLIN2;nc|ENSG00000147475|O94905-2|ERLIN2;nc|ENSG00000147475|O94905-3|ERLIN2	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	587.274761	1172.53497	0.43265	0.00025408	-0.11635	-6.8332E-05	0.31629	0.00018575	587.2746914053719	53.222	0.74792	53.212	52.863	53.611	-0.0096092	0.12685	-1.2593E-05	NaN	31.268	76	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1974100			31626	4768	18265	18266							-0.04439776352796798
NYTDIKDYL	9	Unmodified	_NYTDIKDYL_					0	0	0		nc|ENSG00000112874|Q9BQG2-2|NUDT12;ENSG00000112874|ENST00000230792|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.7792358398438	2	572.779679	1143.5448	-0.12894	-7.3857E-05	-0.52033	-0.00029803	-0.64927	-0.00037189	572.7792590094472	60.021	1.0943	60.021	59.756	60.851	0					123	39	5	0	0	0	3.361E-11	3	14627	14627;14672;14725		192.32	116.56	1	10629000			31627	2465	18266	18267	38937;38938;38939	38937					-0.021225883474244256
NYTDIKDYL	9	Unmodified	_NYTDIKDYL_					0	0	0		nc|ENSG00000112874|Q9BQG2-2|NUDT12;ENSG00000112874|ENST00000230792|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.7791748046875	2	572.779679	1143.5448	-0.22876	-0.00013103	-0.41633	-0.00023847	-0.64509	-0.00036949	572.779313344251	59.914	1.18	60.009	59.714	60.894	0.095093					132	42	5	0	0	0	1.811E-16	3	14630	14582;14630;14686		205.91	130.15	1	11116000			31628	2465	18266	18267	38940;38941;38942	38941					-0.021225883474244256
NYTDIKDYL	9	Unmodified	_NYTDIKDYL_					0	0	0		nc|ENSG00000112874|Q9BQG2-2|NUDT12;ENSG00000112874|ENST00000230792|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.779296875	2	572.779679	1143.5448	0.099728	5.7122E-05	-0.56086	-0.00032125	-0.46114	-0.00026413	572.7792635949534	60.03	1.1764	60.019	59.739	60.916	-0.011486					124	42	4	0	0	0	5.6772E-17	3	14666	14621;14666;14719		220.1	141.37	1	12132000			31629	2465	18266	18267	38943;38944;38945	38944					-0.021225883474244256
NYTDLYEQL	9	Unmodified	_NYTDLYEQL_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.334228515625	2	579.769311	1157.52407	-0.13008	-7.5418E-05	-0.52517	-0.00030447	-0.65525	-0.00037989	579.7688942327186	60.001	0.33113	60.001	59.844	60.175	0					13	11	2	0	0	0	0.23235	1	14680	14680		21.537	6.6987	1	258830	+		31630	13783	18267	18268	38946	38946					-0.048391787270929854
NYTEAFESL	9	Unmodified	_NYTEAFESL_					0	0	0		ENSG00000128585|ENST00000352689|MKLN1;MKLN1|p.I366Lfs*9|1|0.26|ENSG00000128585|chr7:131437920-131437920|A/-|frameshift_variant;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENSG00000128585|ENST00000352689|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2872314453125	2	537.242929	1072.47131	0.69839	0.00037521	-0.018857	-1.0131E-05	0.67954	0.00036508	537.2428447590962	64.518	0.43848	64.518	64.316	64.755	0					36	15	3	0	0	0	0.1645	1	16090	16090		40.239	19.786	1	408770			31631	3375	18268	18269	38947	38947					-0.06203136789895325
NYTEAFESL	9	Unmodified	_NYTEAFESL_					0	0	0		ENSG00000128585|ENST00000352689|MKLN1;MKLN1|p.I366Lfs*9|1|0.26|ENSG00000128585|chr7:131437920-131437920|A/-|frameshift_variant;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENSG00000128585|ENST00000352689|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2869262695312	2	537.242929	1072.47131	0.55093	0.00029598	0.20987	0.00011275	0.76079	0.00040873	537.2429787344047	64.386	0.57529	64.479	64.17	64.746	0.09288					38	20	3	0	0	0	0.20381	1	16057	16057		29.841	5.82	1	424690			31632	3375	18268	18269	38948	38948					-0.06203136789895325
NYTEAFESL	9	Unmodified	_NYTEAFESL_					0	0	0		ENSG00000128585|ENST00000352689|MKLN1;MKLN1|p.I366Lfs*9|1|0.26|ENSG00000128585|chr7:131437920-131437920|A/-|frameshift_variant;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENSG00000128585|ENST00000352689|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2870483398438	2	537.242929	1072.47131	0.66993	0.00035991	0.23289	0.00012512	0.90281	0.00048503	537.2427479875004	64.555	0.4626	64.546	64.289	64.752	-0.0095291					34	16	3	0	0	0	0.1645	1	16085	16085		40.239	19.786	1	446540			31633	3375	18268	18269	38949	38949					-0.06203136789895325
NYTEEVEYF	9	Unmodified	_NYTEEVEYF_					0	0	0		ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.2537841796875	2	597.253494	1192.49243	0.48284	0.00028838	-0.23416	-0.00013985	0.24868	0.00014853	597.2532740339241	63.098	0.5329	63.098	62.881	63.413	0					36	19	2	0	0	0	0.0079761	2	15603	15603;15657		82.529	48.427	1	647260			31634	2499	18269	18270	38950;38951	38950					-0.09611171481037672
NYTEEVEYF	9	Unmodified	_NYTEEVEYF_					0	0	0		ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.2535400390625	2	597.253494	1192.49243	0.55449	0.00033117	-0.35529	-0.0002122	0.1992	0.00011897	597.253203531495	62.975	0.6222	63.071	62.794	63.416	0.095722					36	22	2	0	0	0	0.0098873	2	15589	15539;15589		79.596	45.494	1	710220			31635	2499	18269	18270	38952;38953	38953					-0.09611171481037672
NYTEEVEYF	9	Unmodified	_NYTEEVEYF_					0	0	0		ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.2534790039062	2	597.253494	1192.49243	0.39993	0.00023886	-0.27803	-0.00016605	0.1219	7.2806E-05	597.2532813189135	63.172	0.59898	63.163	62.86	63.459	-0.0085564					36	21	2	0	0	0	0.0054984	2	15605	15605;15654		86.332	54.026	1	629110			31636	2499	18269	18270	38954;38955	38954					-0.09611171481037672
NYTKAMRLF	9	Oxidation (M)	_NYTKAM(Oxidation (M))RLF_		NYTKAM(1)RLF		NYTKAM(130)RLF	0	0	1		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.300048828125	2	580.300059	1158.58556	0.32824	0.00019048	-0.78155	-0.00045353	-0.45331	-0.00026305	580.299709545789	33.495	1.8776	33.495	33.039	34.917	0					205	67	5	0	0	0	0.00078391	7	6479	6432;6479;6521;6563;6627;6675;6727		125.53	83.69	1	7435800			31637	7299	18270	18271	38956;38957;38958;38959;38960;38961;38962	38957		813			0.012614744912070819
NYTKAMRLF	9	Oxidation (M)	_NYTKAM(Oxidation (M))RLF_		NYTKAM(1)RLF		NYTKAM(140)RLF	0	0	1		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2996826171875	2	580.300059	1158.58556	0.13865	8.0458E-05	-0.27158	-0.0001576	-0.13293	-7.7138E-05	580.2999813097855	33.317	1.9114	33.384	33.025	34.937	0.0667					188	68	4	0	0	0	0.00012108	5	6475	6387;6432;6475;6570;6624		137.42	95.584	1	9014600			31638	7299	18270	18271	38963;38964;38965;38966;38967	38965		813			0.012614744912070819
NYTKAMRLF	9	Oxidation (M)	_NYTKAM(Oxidation (M))RLF_					0	0	1		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	580.300059	1158.58556	0.42508	0.00024667	-0.70889	-0.00041137	-0.28381	-0.0001647	580.2997289619345	33.307	1.7605	33.364	33.035	34.795	0.056961	-0.050246	-0.00012987	NaN	137.42	200	63	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9155400			31639	7299	18270	18271				813			0.012614744912070819
NYTLLQTIPP	10	Unmodified	_NYTLLQTIPP_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3009643554688	2	580.321514	1158.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.716	1	33.782	33.282	34.282	0.06636								0	0	0	0.34994	1	6571	6571		14.838	3.198	1				31640	1403	18271	18272	38968	38968					0.05550567820296237
NYTLVSHLI	9	Unmodified	_NYTLVSHLI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF;ENST00000548630.1_1_12:57906018-57906171:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.29638671875	2	530.295299	1058.57605	0.63439	0.00033641	0.88223	0.00046784	1.5166	0.00080426	530.295806181789	60.45	0.78653	60.45	60.15	60.936	0					63	28	3	0	0	0	3.6475E-11	2	14834	14834;14886		191.38	102.48	1	3675300			31641	6138	18272	18273	38969;38970	38969					0.049100294773325004
NYTLVSHLI	9	Unmodified	_NYTLVSHLI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF;ENST00000548630.1_1_12:57906018-57906171:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2962646484375	2	530.295299	1058.57605	0.40548	0.00021502	1.0517	0.00055773	1.4572	0.00077275	530.2959417586957	60.336	0.90762	60.431	60.155	61.063	0.095089					71	32	3	0	0	0	8.4618E-08	4	14755	14755;14804;14854;14910		176.84	98.688	1	2993400			31642	6138	18272	18273	38971;38972;38973;38974	38971					0.049100294773325004
NYTLVSHLI	9	Unmodified	_NYTLVSHLI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF;ENST00000548630.1_1_12:57906018-57906171:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2963256835938	2	530.295299	1058.57605	0.71211	0.00037763	0.88518	0.0004694	1.5973	0.00084704	530.2958618799597	60.494	0.74711	60.483	60.169	60.916	-0.010742					67	27	3	0	0	0	0.00078391	1	14852	14852		125.53	81.671	1	3026900			31643	6138	18272	18273	38975	38975					0.049100294773325004
NYTPYKYNL	9	Unmodified	_NYTPYKYNL_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.2904052734375	2	588.290214	1174.56587	0.22809	0.00013418	0.14717	8.6577E-05	0.37526	0.00022076	588.2902974397141	46.169	1.2449	46.169	45.917	47.162	0					121	44	4	0	0	0	2.717E-15	1	10394	10394		201.57	152.01	1	16231000			31644	2540	18273	18274	38976	38976					-0.0144257824788383
NYTPYKYNL	9	Unmodified	_NYTPYKYNL_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.2905883789062	2	588.290214	1174.56587	0.13691	8.0545E-05	0.28976	0.00017046	0.42667	0.00025101	588.290509771419	45.86	1.2044	45.92	45.619	46.824	0.059834					155	43	7	0	0	0	6.8263E-10	1	10255	10255		171.09	134.96	1	17415000			31645	2540	18273	18274	38977	38977					-0.0144257824788383
NYTPYKYNL	9	Unmodified	_NYTPYKYNL_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.2907104492188	2	588.290214	1174.56587	0.52956	0.00031153	0.07536	4.4334E-05	0.60492	0.00035587	588.2902925696658	45.864	1.132	45.929	45.647	46.779	0.065048					115	40	4	0	0	0	2.5673E-10	1	10289	10289		201.57	165.44	1	15396000			31646	2540	18273	18274	38978	38978					-0.0144257824788383
NYTSEAHQI	9	Unmodified	_NYTSEAHQI_					0	0	0		ENST00000502290.1_1_4:141463686-141471526:+|nuORF;ENSG00000179387|ENST00000323570|ELMOD2	ENST00000502290.1_1_4:141463686-141471526:+|nuORF	ENST00000502290.1_1_4:141463686-141471526:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2579956054688	2	531.74617	1061.47779	0.26796	0.00014249	-0.33672	-0.00017905	-0.068753	-3.6559E-05	531.7459037073336	28.458	0.39874	28.458	28.241	28.64	0					21	13	2	0	0	0	0.18208	1	4952	4952		26.268	5.3969	1	84755			31647	7119	18274	18275	38979	38979					-0.050491988385147124
NYVANTNVF	9	Unmodified	_NYVANTNVF_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-2|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.850830078125	2	521.253631	1040.49271	0.74694	0.00038935	-0.67401	-0.00035133	0.072935	3.8018E-05	521.253477603789	54.58	0.75967	54.58	54.214	54.974	0					53	27	3	0	0	0	0.14306	1	12926	12926		38.615	19.176	1	796590			31648	3130	18275	18276	38980	38980					-0.025917069705201357
NYVDLVSSL	9	Unmodified	_NYVDLVSSL_					0	0	0		ENST00000380120.6_1_6:4116110-4130812:-|nuORF;ECI2|p.F321Sfs*14|1|0.17|ENSG00000198721|chr6:4117375-4117375|A/-|frameshift_variant;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2;ENST00000464057.5_1_6:4126367-4135774:-|nuORF;ENST00000464583.5_1_6:4126367-4133998:-|nuORF	ENST00000380120.6_1_6:4116110-4130812:-|nuORF	ENST00000380120.6_1_6:4116110-4130812:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.74957275390625	2	505.263665	1008.51278	0.35306	0.00017839	0.4316	0.00021807	0.78467	0.00039646	505.2633568914938	75.222	0.51511	75.275	75.051	75.566	0.052368					41	18	3	0	0	0	0.18936	1	19306	19306		26.268	3.5319	1	267980			31649	278	18276	18277	38981	38981					0.008860439694331035
NYVEDIPFL	9	Unmodified	_NYVEDIPFL_					0	0	0		nc|ENSG00000162836|Q9NPH0-2|ACP6;ENSG00000162836|ENST00000583509|ACP6	nc|ENSG00000162836|Q9NPH0-2|ACP6	nc|ENSG00000162836|Q9NPH0-2|ACP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.27880859375	2	555.279315	1108.54408	0.49824	0.00027666	-0.34852	-0.00019353	0.14972	8.3136E-05	555.2787977142547	86.55	1.6914	86.55	85.989	87.68	0					87	70	2	0	0	0	0.13748	1	22775	22775		32.786	11.039	1	205930			31650	5623	18277	18278	38982	38982					-0.005853829964735269
NYVEDIPFL	9	Unmodified	_NYVEDIPFL_					0	0	0		nc|ENSG00000162836|Q9NPH0-2|ACP6;ENSG00000162836|ENST00000583509|ACP6	nc|ENSG00000162836|Q9NPH0-2|ACP6	nc|ENSG00000162836|Q9NPH0-2|ACP6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2786865234375	2	555.279315	1108.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.52	1	86.511	86.011	87.011	-0.0090027								0	0	0	0.15832	1	22758	22758		32.786	4.2988	1				31651	5623	18277	18278	38983	38983					-0.005853829964735269
NYVEKGFQI	9	Unmodified	_NYVEKGFQI_					0	0	0		ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6;ENST00000527591.5_1_14:61453838-61514994:+|nuORF	ENSG00000139974|ENST00000267488|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2859497070312	2	549.284931	1096.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.754	1	48.799	48.299	49.299	0.044891								0	0	0	0.026891	1	11179	11179		67.838	27.888	1				31652	4275	18278	18279	38984	38984					0.010894390976773138
NYVEVTRKW	9	Unmodified	_NYVEVTRKW_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.3825073242188	2	597.81693	1193.61931	0.90208	0.00053928	-0.71989	-0.00043036	0.18219	0.00010891	597.8161371414291	37.399	0.46401	37.399	37.152	37.616	0					26	16	2	0	0	0	0.036702	1	7682	7682		80.676	36.904	1	285470			31653	6698	18279	18280	38985	38985					0.0302421925462113
NYVEVTRKW	9	Unmodified	_NYVEVTRKW_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.3825073242188	2	597.81693	1193.61931	0.5573	0.00033316	-0.36871	-0.00022042	0.18859	0.00011274	597.8164830852844	37.233	0.48838	37.321	37.09	37.578	0.08741					29	17	2	0	0	0	0.082647	1	7623	7623		61.602	28.816	1	269280			31654	6698	18279	18280	38986	38986					0.0302421925462113
NYVEVTRKW	9	Unmodified	_NYVEVTRKW_					0	0	0		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3826904296875	2	597.81693	1193.61931	0.53588	0.00032036	-0.19603	-0.00011719	0.33984	0.00020316	597.8165058137571	37.216	0.41183	37.309	37.086	37.498	0.093018					25	14	2	0	0	0	0.035405	1	7634	7634		70.332	39.064	1	236050			31655	6698	18279	18280	38987	38987					0.0302421925462113
NYVKDLSRL	9	Unmodified	_NYVKDLSRL_					0	0	0		ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENSG00000144677|ENST00000273179|CTDSPL	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3118896484375	2	554.31148	1106.60841	0.11348	6.2903E-05	0.37946	0.00021034	0.49294	0.00027324	554.3116077959555	42.626	0.73174	42.626	42.33	43.062	0					49	26	2	0	0	0	0.003673	1	9320	9320		96.936	47.381	1	1062400			31656	4594	18280	18281	38988	38988					0.05936816880330298
NYVKDLSRL	9	Unmodified	_NYVKDLSRL_					0	0	0		ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENSG00000144677|ENST00000273179|CTDSPL	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3119506835938	2	554.31148	1106.60841	0.46458	0.00025752	0.07832	4.3414E-05	0.5429	0.00030094	554.3115467266139	42.056	0.65847	42.141	41.932	42.591	0.085201					51	21	4	0	0	0	0.0041491	1	9134	9134		93.166	36.989	1	980100			31657	4594	18280	18281	38989	38989					0.05936816880330298
NYVKDLSRL	9	Unmodified	_NYVKDLSRL_					0	0	0		ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENSG00000144677|ENST00000273179|CTDSPL	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3118286132812	2	554.31148	1106.60841	0.47299	0.00026219	0.35582	0.00019724	0.82882	0.00045942	554.3116432088233	41.937	0.51986	42.034	41.87	42.39	0.096622					43	17	3	0	0	0	0.027994	1	9088	9088		65.474	27.298	1	1051200			31658	4594	18280	18281	38990	38990					0.05936816880330298
NYVKGSWNK	9	Unmodified	_NYVKGSWNK_					0	0	0			REV__ENST00000472855.5_1_20:23375586-23402039:-|nuORF	REV__ENST00000472855.5_1_20:23375586-23402039:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2857666015625	2	548.282723	1094.55089	0.51258	0.00028104	1.8889	0.0010357	2.4015	0.0013167	549.2852766752206	48.825	0.78771	48.825	48.504	49.292	0					73	28	4	0	0	0	0.17787	1	11205	11205		26.884	5.137	1	967050	+		31659	21376	18281	18282	38991	38991					0.00739974674752375
NYVKGSWNK	9	Unmodified	_NYVKGSWNK_					0	0	0			REV__ENST00000472855.5_1_20:23375586-23402039:-|nuORF	REV__ENST00000472855.5_1_20:23375586-23402039:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2857055664062	2	548.282723	1094.55089	0.45605	0.00025004	2.3235	0.001274	2.7796	0.001524	549.2853435905641	48.761	1.0536	48.793	48.387	49.441	0.032043					79	37	4	0	0	0	0.21303	1	11156	11156		21.747	2.4897	1	834690	+		31660	21376	18281	18282	38992	38992					0.00739974674752375
NYVQAVEEF	9	Unmodified	_NYVQAVEEF_					0	0	0		ENST00000527932.1_1_1:46080644-46081380:+|nuORF;ENST00000529239.1_1_8:61850915-61851251:-|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP	ENST00000527932.1_1_1:46080644-46081380:+|nuORF	ENST00000527932.1_1_1:46080644-46081380:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.27490234375	2	549.758746	1097.50294	0.53524	0.00029426	0.64858	0.00035656	1.1838	0.00065082	549.7590394001633	62.757	0.79423	62.852	62.57	63.365	0.095722					73	28	4	0	0	0	0.0046246	3	15483	15438;15483;15503		89.401	49.443	1	2447700			31661	11575	18282	18283	38993;38994;38995	38994					-0.04191144035939942
NYVQAVEEF	9	Unmodified	_NYVQAVEEF_					0	0	0		ENST00000527932.1_1_1:46080644-46081380:+|nuORF;ENST00000529239.1_1_8:61850915-61851251:-|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP	ENST00000527932.1_1_1:46080644-46081380:+|nuORF	ENST00000527932.1_1_1:46080644-46081380:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	549.758746	1097.50294	0.41558	0.00022847	0.88326	0.00048558	1.2988	0.00071405	549.7591482138716	62.876	0.86332	62.876	62.58	63.443	0	0.0062653	6.4305E-05	NaN	89.401	74	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2310300			31662	11575	18282	18283							-0.04191144035939942
NYYEVHKELF	10	Unmodified	_NYYEVHKELF_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-2|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.23822021484375	3	447.88731	1340.6401	0.38136	0.0001708	-0.21913	-9.8148E-05	0.16222	7.2656E-05	447.88695239229963	45.463	0.37264	45.528	45.33	45.703	0.065048					26	13	3	0	0	0	0.31651	1	10142	10142		11.518	4.4808	1	289400			31663	8156	18283	18284	38996	38996					-0.016592351563986085
NYYEVHKELF	10	Unmodified	_NYYEVHKELF_					0	0	0		nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-2|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1	nc|ENSG00000198901|O43663-3|PRC1	nc|ENSG00000198901|O43663-3|PRC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	447.88731	1340.6401	0.6258	0.00028029	-1.1287	-0.00050553	-0.50289	-0.00022524	447.88687311559505	45.835	0.33417	45.835	45.64	45.974	0	0.19674	-0.00067583	NaN	11.518	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215110			31664	8156	18283	18284							-0.016592351563986085
NYYKCDDIF	9	Unmodified	_NYYKCDDIF_					0	0	0			REV__nc|ENSG00000178460|Q4G0Z9-2|MCMDC2	REV__nc|ENSG00000178460|Q4G0Z9-2|MCMDC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.2634887695312	2	590.752607	1179.49066	0.45991	0.0002717	-2.9908	-0.0017668	-2.5309	-0.0014951	590.7506815505402	68.401	0.23195	68.382	68.197	68.429	-0.019157					12	7	2	0	0	0	0.25202	1	17169	17169		10.824	2.9138	1	234840	+		31665	18037	18284	18285	38997	38997					-0.09190503770673786
NYYYELWWFWL	11	Unmodified	_NYYYELWWFWL_					0	0	0		nc|ENSG00000166272|Q9NX94|WBP1L;ENSG00000166272|ENST00000448841|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.658203125	3	561.594127	1681.76055	0.27441	0.0001541	-0.68161	-0.00038279	-0.4072	-0.00022868	561.5938226462501	28.802	0.54109	28.802	28.548	29.089	0					45	18	3	0	0	0	0.33334	1	5073	5073		1.2148	1.2148	1	316740			31666	6055	18285	18286	38998	38998					-0.053058271627833165
NYYYELWWFWL	11	Unmodified	_NYYYELWWFWL_					0	0	0		nc|ENSG00000166272|Q9NX94|WBP1L;ENSG00000166272|ENST00000448841|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.6582641601562	3	561.594127	1681.76055	0.28037	0.00015745	-0.92772	-0.000521	-0.64735	-0.00036355	561.5936917653156	28.708	0.44153	28.704	28.542	28.984	-0.0042572					37	14	4	0	0	0	0.33334	1	5092	5092		1.2148	1.2148	1	397040			31667	6055	18285	18286	38999	38999					-0.053058271627833165
NYYYELWWFWL	11	Unmodified	_NYYYELWWFWL_					0	0	0		nc|ENSG00000166272|Q9NX94|WBP1L;ENSG00000166272|ENST00000448841|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.6581420898438	3	561.594127	1681.76055	0.059207	3.325E-05	-0.90669	-0.00050919	-0.84749	-0.00047594	561.9280230041151	28.747	0.47152	28.747	28.524	28.996	0.00046921					48	16	4	0	0	0	0.33334	1	5076	5076		1.2148	1.2148	1	406440			31668	6055	18285	18286	39000	39000					-0.053058271627833165
PAAAASIKSP	10	Unmodified	_PAAAASIKSP_					0	0	0		BCL9|p.V910Cfs*42|1|0.58|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant;ENSG00000116128|ENST00000234739|BCL9	BCL9|p.V910Cfs*42|1|0.58|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant	BCL9|p.V910Cfs*42|1|0.58|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7486572265625	2	456.761092	911.507631	-0.045643	-2.0848E-05	-0.83001	-0.00037912	-0.87565	-0.00039996	456.76075643391107	17.893	0.46849	17.776	17.489	17.957	-0.11739					25	15	2	0	0	0	0.31847	1	1773	1773		6.7232	0	1	32928			31669	74	18286	18287	39001	39001					0.04833784897482474
PAAAPGSARL	10	Unmodified	_PAAAPGSARL_					0	0	0			REV__ENST00000468365.1_1_1:1178822-1179616:-|nuORF	REV__ENST00000468365.1_1_1:1178822-1179616:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2424011230469	2	455.758884	909.503215	-0.156	-7.11E-05	-1.0922	-0.0004978	-1.2482	-0.0005689	455.75833380514587	14.326	0.23299	14.222	14.105	14.338	-0.10466					12	7	2	0	0	0	0.31889	1	687	687		6.2058	1.8765	1	34422	+		31670	20037	18287	18288	39002	39002					0.04484320474546166
PAAAPLPGF	9	Unmodified	_PAAAPLPGF_					0	0	0		ENST00000586244.1_1_17:73759392-73759692:-|nuORF	ENST00000586244.1_1_17:73759392-73759692:-|nuORF	ENST00000586244.1_1_17:73759392-73759692:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.5832824707031	2	420.734346	839.454139	-0.056954	-2.3962E-05	-3.3509	-0.0014099	-3.4079	-0.0014338	420.73317446885056	46.674	0.29855	46.674	46.514	46.813	0					12	10	2	0	0	0	0.19319	1	10574	10574		20.871	0	1	152780			31671	12114	18288	18289	39003	39003					0.027990321856123046
PAAAPLPGF	9	Unmodified	_PAAAPLPGF_					0	0	0		ENST00000586244.1_1_17:73759392-73759692:-|nuORF	ENST00000586244.1_1_17:73759392-73759692:-|nuORF	ENST00000586244.1_1_17:73759392-73759692:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.5832214355469	2	420.734346	839.454139	0.24701	0.00010392	-4.0093	-0.0016869	-3.7623	-0.0015829	420.7329240236279	46.734	0.18796	46.787	46.629	46.817	0.05257					10	6	2	0	0	0	0.19319	1	10549	10549		20.871	0	1	118450			31672	12114	18288	18289	39004	39004					0.027990321856123046
PAAARLQP	8	Unmodified	_PAAARLQP_					0	0	0		ENSG00000183307|ENST00000331437|TMEM121B	ENSG00000183307|ENST00000331437|TMEM121B	ENSG00000183307|ENST00000331437|TMEM121B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.92633056640625	2	412.24287	822.471186	-0.13121	-5.4092E-05	0.56286	0.00023204	0.43165	0.00017794	412.2429063759225	25.553	0.47372	25.521	25.319	25.793	-0.031408					31	16	2	0	0	0	0.33245	1	4089	4089		19.439	0	1	230810			31673	7357	18289	18290	39005	39005					0.05284952791430442
PAAELGKR	8	Unmodified	_PAAELGKR_					0	0	0			REV__ENST00000537263.5_2_19:19144647-19148472:+|nuORF	REV__ENST00000537263.5_2_19:19144647-19148472:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5576477050781	2	421.248152	840.481751	-0.36959	-0.00015569	0.66837	0.00028155	0.29878	0.00012586	421.24832617164117	13.746	0.42685	13.746	13.597	14.024	0					22	14	2	0	0	0	0.33993	1	514	514		16.942	0	1	61354	+		31674	22068	18290	18291	39006	39006					0.05512935445858602
PAAELGKR	8	Unmodified	_PAAELGKR_					0	0	0			REV__ENST00000537263.5_2_19:19144647-19148472:+|nuORF	REV__ENST00000537263.5_2_19:19144647-19148472:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.5574951171875	2	421.248152	840.481751	-0.34934	-0.00014716	0.42643	0.00017963	0.077091	3.2474E-05	421.24829304696874	13.803	0.42325	13.698	13.568	13.991	-0.10466					23	14	2	0	0	0	0.33993	1	540	540		16.942	0	1	62369	+		31675	22068	18290	18291	39007	39007					0.05512935445858602
PAAELGKR	8	Unmodified	_PAAELGKR_					0	0	0			REV__ENST00000537263.5_2_19:19144647-19148472:+|nuORF	REV__ENST00000537263.5_2_19:19144647-19148472:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5576477050781	2	421.248152	840.481751	-0.30552	-0.0001287	0.53327	0.00022464	0.22775	9.5939E-05	421.2482460597592	13.83	0.4379	13.764	13.632	14.07	-0.066068					21	14	3	0	0	0	0.32886	1	543	543		21.747	0	1	74361	+		31676	22068	18290	18291	39008	39008					0.05512935445858602
PAAESLQAAEK	11	Unmodified	_PAAESLQAAEK_					0	0	0			REV__ENSG00000213983|ENST00000397120|AP1G2	REV__ENSG00000213983|ENST00000397120|AP1G2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.1922607421875	2	557.790578	1113.5666	0.11802	6.5831E-05	-0.97053	-0.00054135	-0.85251	-0.00047552	557.7906389170789	29.2	0.38149	29.213	29.009	29.39	0.013474					19	13	2	0	0	0	0.32996	1	5211	5211		8.1555	0.54658	1	76545	+		31677	19051	18291	18292	39009	39009					0.014362164011345158
PAAESLQAAEK	11	Unmodified	_PAAESLQAAEK_					0	0	0			REV__ENSG00000213983|ENST00000397120|AP1G2	REV__ENSG00000213983|ENST00000397120|AP1G2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	557.790578	1113.5666	0.49274	0.00027485	-1.3206	-0.00073662	-0.82787	-0.00046178	557.7898963328835	29.234	0.4578	29.234	28.898	29.355	0	0.032467	-0.0011249	NaN	8.1555	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55843	+		31678	19051	18291	18292							0.014362164011345158
PAAESLQAAEK	11	Unmodified	_PAAESLQAAEK_					0	0	0			REV__ENSG00000213983|ENST00000397120|AP1G2	REV__ENSG00000213983|ENST00000397120|AP1G2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	557.790578	1113.5666	0.35078	0.00019566	0.23058	0.00012861	0.58135	0.00032427	557.7905367991817	29.145	0.27887	29.157	29.11	29.389	0.012264	-0.044396	0.00060561	NaN	8.1555	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89964	+		31679	19051	18291	18292							0.014362164011345158
PAAGPRAEK	9	Unmodified	_PAAGPRAEK_					0	0	0		ENST00000574327.1_1_17:636048-636303:+|nuORF	ENST00000574327.1_1_17:636048-636303:+|nuORF	ENST00000574327.1_1_17:636048-636303:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.24749755859375	2	448.751059	895.487565	-0.14295	-6.4147E-05	-0.86348	-0.00038749	-1.0064	-0.00045163	448.7506299634632	24.928	0.88844	24.897	24.681	25.57	-0.03141					51	30	2	0	0	0	0.25417	1	4022	4022		8.5933	0	1	177690			31680	12038	18292	18293	39010	39010					0.03564033957513857
PAAGPRAEK	9	Unmodified	_PAAGPRAEK_					0	0	0		ENST00000574327.1_1_17:636048-636303:+|nuORF	ENST00000574327.1_1_17:636048-636303:+|nuORF	ENST00000574327.1_1_17:636048-636303:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	448.751059	895.487565	0.025436	1.1414E-05	-0.77323	-0.00034699	-0.7478	-0.00033557	448.7506230165596	24.958	0.82446	24.903	24.628	25.453	-0.055931	-0.0048	0.00013847	NaN	8.5933	61	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176390			31681	12038	18292	18293							0.03564033957513857
PAAKLRHH	8	Unmodified	_PAAKLRHH_					0	0	0		nc|ENSG00000162585|Q6NZ36-2|FAAP20;ENST00000487186.5_1_1:2121150-2130436:-|nuORF	nc|ENSG00000162585|Q6NZ36-2|FAAP20	nc|ENSG00000162585|Q6NZ36-2|FAAP20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2747497558594	2	465.275035	928.535518	-0.30061	-0.00013986	0.80154	0.00037294	0.50094	0.00023307	465.27531686924885	39.766	0.7021	39.766	39.43	40.132	0					65	25	3	0	0	0	0.34131	1	8343	8343		7.9102	7.9102	1	1048400			31682	11116	18293	18294	39011	39011					0.06839152668226234
PAAKPLPSK	9	Unmodified	_PAAKPLPSK_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.24273681640625	2	454.781828	907.549102	-0.17193	-7.819E-05	-1.5352	-0.00069819	-1.7071	-0.00077638	454.7810741747738	14.185	0.3374	14.185	14.086	14.423	0					18	11	2	0	0	0	0.20167	1	658	658		29.082	7.3349	1	64502			31683	3583	18294	18295	39012	39012					0.0916296565679886
PAAKPLPSK	9	Unmodified	_PAAKPLPSK_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2424011230469	2	454.781828	907.549102	-0.1483	-6.7443E-05	-0.76243	-0.00034674	-0.91073	-0.00041418	454.78133731176007	14.274	0.34675	14.169	14.049	14.396	-0.10466					20	11	2	0	0	0	0.24289	1	687	687		18.146	5.1039	1	56461			31684	3583	18294	18295	39013	39013					0.0916296565679886
PAAKPLPSK	9	Unmodified	_PAAKPLPSK_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2425842285156	2	454.781828	907.549102	-0.18708	-8.5081E-05	-0.74666	-0.00033957	-0.93374	-0.00042465	454.7813353000072	14.275	0.46738	14.209	14.07	14.537	-0.066068					23	16	2	0	0	0	0.24993	1	683	683		13.042	1.4022	1	51847			31685	3583	18294	18295	39014	39014					0.0916296565679886
PAAKRQEL	8	Unmodified	_PAAKRQEL_					0	0	0			REV__nc|ENSG00000175920|Q18PE1-3|DOK7	REV__nc|ENSG00000175920|Q18PE1-3|DOK7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7933044433594	2	456.766709	911.518865	0.24459	0.00011172	-0.050184	-2.2922E-05	0.19441	8.88E-05	456.7665919112773	36.908	0.27508	36.996	36.815	37.09	0.08741					12	9	2	0	0	0	0.34046	1	7560	7560		5.2307	0	1	64210	+		31686	23097	18295	18296	39015	39015					0.05956606991605895
PAALEKLRSS	10	Unmodified	_PAALEKLRSS_					0	0	0			REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2	REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.3117065429688	2	536.31148	1070.60841	0.42309	0.00022691	0.47225	0.00025327	0.89534	0.00048018	536.3116740263903	88.065	0.79979	88.154	87.874	88.674	0.089195					97	38	3	0	0	0	0.36786	1	23236	23236		9.3831	1.2276	1	788570	+		31687	14462	18296	18297	39016	39016					0.07592816880310238
PAALEKLRSS	10	Unmodified	_PAALEKLRSS_					0	0	0			REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2	REV__nc|ENSG00000105549|Q9P2T0-2|SPMAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.3123168945312	2	536.31148	1070.60841	0.55832	0.00029943	0.46877	0.00025141	1.0271	0.00055084	536.3115907920708	88.147	0.71482	88.144	87.868	88.583	-0.0028381					95	36	4	0	0	0	0.36786	2	23222	23222;23265		9.3831	1.2276	1	711040	+		31688	14462	18296	18297	39017;39018	39017					0.07592816880310238
PAALPKPGKRL	11	Unmodified	_PAALPKPGKRL_					0	0	0		nc|nan|Q5SNV9-3|C1orf167	nc|nan|Q5SNV9-3|C1orf167	nc|nan|Q5SNV9-3|C1orf167	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.2778930664062	2	574.369133	1146.72371	-0.10937	-6.2819E-05	0.20414	0.00011725	0.09477	5.4433E-05	574.3692489487189	13.282	0.21826	13.282	13.147	13.365	0					14	7	3	0	0	0	0.33345	1	345	345		0.35063	0.35063	1	41484			31689	13027	18297	18298	39019	39019					0.15621965801983606
PAALPKPGKRL	11	Unmodified	_PAALPKPGKRL_					0	0	0		nc|nan|Q5SNV9-3|C1orf167	nc|nan|Q5SNV9-3|C1orf167	nc|nan|Q5SNV9-3|C1orf167	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	574.369133	1146.72371	-0.15293	-8.7836E-05	0.18922	0.00010868	0.036292	2.0845E-05	574.3691077180903	13.355	0.19881	13.287	13.189	13.388	-0.067496	0.002363	-5.9466E-06	NaN	0.35063	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39139			31690	13027	18297	18298							0.15621965801983606
PAALRPLVL	9	Unmodified	_PAALRPLVL_					0	0	0		nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.31341552734375	2	475.313295	948.612037	0.68039	0.0003234	-0.28761	-0.00013671	0.39278	0.00018669	475.31306572423586	56.248	0.78053	56.248	55.963	56.744	0					72	28	3	0	0	0	0.062246	1	13509	13509		48.346	0	1	3816600			31691	5472	18298	18299	39020	39020					0.1356753144484628
PAALTGRRRRQ	11	Unmodified	_PAALTGRRRRQ_					0	0	0		ENST00000261951.8_1_5:179921647-179956302:+|nuORF;ENST00000393356.5_1_5:179921647-179922490:+|nuORF	ENST00000261951.8_1_5:179921647-179956302:+|nuORF	ENST00000261951.8_1_5:179921647-179956302:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.3851928710938	2	641.384168	1280.75378	0.27296	0.00017507	-0.3106	-0.00019921	-0.037638	-2.4141E-05	641.3849818814257	93.344	1.7735	93.344	92.641	94.415	0					355	148	3	0	0	0	0.44523	4	24866	24828;24866;24906;24943		5.2969	0.39987	1	570220			31692	8980	18299	18300	39021;39022;39023;39024	39022					0.12463717519881357
PAALTGRRRRQ	11	Unmodified	_PAALTGRRRRQ_					0	0	0		ENST00000261951.8_1_5:179921647-179956302:+|nuORF;ENST00000393356.5_1_5:179921647-179922490:+|nuORF	ENST00000261951.8_1_5:179921647-179956302:+|nuORF	ENST00000261951.8_1_5:179921647-179956302:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8865356445312	2	641.384168	1280.75378	0.43559	0.00027938	-0.26749	-0.00017156	0.1681	0.00010782	641.3849270103111	93.215	0.88622	93.301	92.91	93.796	0.086678					218	77	4	0	0	0	0.46475	1	24775	24775		2.7352	1.2533	1	610510			31693	8980	18299	18300	39025	39025					0.12463717519881357
PAALWNEFL	9	Unmodified	_PAALWNEFL_					0	0	0		ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3137817382812	2	530.776742	1059.53893	0.25941	0.00013769	0.74527	0.00039557	1.0047	0.00053326	530.7773295160263	41.06	0.2205	41.157	40.987	41.208	0.096622					13	7	2	0	0	0	0.25291	1	8796	8796		9.3474	4.5914	1	99707			31694	4987	18300	18301	39026	39026					0.011543579315684838
PAALWTPELF	10	Unmodified	_PAALWTPELF_					0	0	0			REV__ENST00000494101.1_1_16:30680055-30680963:+|nuORF	REV__ENST00000494101.1_1_16:30680055-30680963:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2899780273438	2	572.8055	1143.59645	0.23075	0.00013218	-0.19956	-0.00011431	0.031199	1.7871E-05	572.8051468163688	70.014	0.19563	69.991	69.886	70.081	-0.022087					8	6	2	0	0	0	0.29519	1	17727	17727		21.747	1.3321	1	60638	+		31695	16760	18301	18302	39027	39027					0.03039200137118314
PAANLSLAL	9	Unmodified	_PAANLSLAL_					0	0	0		ENST00000490553.1_1_2:101898195-101898495:-|nuORF;ENSG00000163162|ENST00000295317|RNF149	ENST00000490553.1_1_2:101898195-101898495:-|nuORF	ENST00000490553.1_1_2:101898195-101898495:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.74517822265625	2	435.258185	868.501818	-0.34311	-0.00014934	1.1607	0.0005052	0.81759	0.00035586	435.2586421572195	27.867	1.3921	27.867	26.789	28.181	0					77	48	3	0	0	0	0.21303	1	4677	4677		21.747	3.6117	1	123500			31696	5656	18302	18303	39028	39028					0.062306863857997996
PAAPGPTQQ	9	Unmodified	_PAAPGPTQQ_					0	0	0		nc|ENSG00000068078|P22607-4|FGFR3	nc|ENSG00000068078|P22607-4|FGFR3	nc|ENSG00000068078|P22607-4|FGFR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.23175048828125	2	433.721967	865.429381	-0.2267	-9.8325E-05	0.45295	0.00019645	0.22625	9.8127E-05	433.72175620169526	23.069	0.2556	22.981	22.853	23.108	-0.087608					12	8	2	0	0	0	0.25291	1	3306	3306		5.2307	0	1	29634			31697	12582	18303	18304	39029	39029					-0.008716476877566492
PAAPLTGRQ	9	Unmodified	_PAAPLTGRQ_					0	0	0			REV__ENST00000597346.1_1_11:2720561-2721134:-|nuORF	REV__ENST00000597346.1_1_11:2720561-2721134:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.24273681640625	2	455.758884	909.503215	-0.18739	-8.5404E-05	-1.2476	-0.00056861	-1.435	-0.00065401	455.75804222716147	14.231	0.30989	14.231	14.113	14.423	0					13	10	2	0	0	0	0.25417	1	658	658		8.5933	0.68312	1	33622	+		31698	22610	18304	18305	39030	39030					0.044843204745689036
PAAPSSVPR	9	Unmodified	_PAAPSSVPR_					0	0	0		nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2457275390625	2	441.245609	880.476666	0.047938	2.1153E-05	0.19634	8.6634E-05	0.24428	0.00010779	441.2456910267471	24.688	0.69861	24.632	24.376	25.074	-0.055931					41	24	2	0	0	0	0.23767	1	3839	3839		18.146	0	1	89442			31699	5157	18305	18306	39031	39031					0.03164631583240407
PAAPSSVPR	9	Unmodified	_PAAPSSVPR_					0	0	0		nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	441.245609	880.476666	0.047938	2.1153E-05	0.19634	8.6634E-05	0.24428	0.00010779	441.2456910267471	24.688	0.69861	24.632	24.376	25.074	-0.055931	0.029343	-1.009E-05	NaN	18.146	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89442			31700	5157	18305	18306							0.03164631583240407
PAAPSSVPR	9	Unmodified	_PAAPSSVPR_					0	0	0		nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	441.245609	880.476666	-0.05695	-2.5129E-05	1.9931	0.00087946	1.9362	0.00085433	441.24560289144415	24.596	0.67384	24.564	24.373	25.047	-0.031408	-0.037841	0.0015756	NaN	18.146	39	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111750			31701	5157	18305	18306							0.03164631583240407
PAAQEREGPEQ	11	Unmodified	_PAAQEREGPEQ_					0	0	0			REV__ENST00000566936.5_2_16:57507136-57507292:-|nuORF	REV__ENST00000566936.5_2_16:57507136-57507292:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.8538513183594	3	404.526553	1210.55783	-0.3962	-0.00016027	1.4307	0.00057877	1.0345	0.00041849	404.52713005761535	28.327	0.45692	28.327	28.065	28.522	0					25	15	2	0	0	0	0.44192	1	4900	4900		2.6312	0	1	129780	+		31702	22374	18306	18307	39032	39032					-0.039027572353234063
PAAQEREGPEQ	11	Unmodified	_PAAQEREGPEQ_					0	0	0			REV__ENST00000566936.5_2_16:57507136-57507292:-|nuORF	REV__ENST00000566936.5_2_16:57507136-57507292:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.853759765625	3	404.526553	1210.55783	-0.37294	-0.00015086	1.3777	0.00055734	1.0048	0.00040647	404.5271102817475	28.279	0.46445	28.275	28.055	28.519	-0.0042572					27	16	2	0	0	0	0.44192	1	4887	4887		2.6312	2.6312	1	117230	+		31703	22374	18306	18307	39033	39033					-0.039027572353234063
PAAQEREGPEQ	11	Unmodified	_PAAQEREGPEQ_					0	0	0			REV__ENST00000566936.5_2_16:57507136-57507292:-|nuORF	REV__ENST00000566936.5_2_16:57507136-57507292:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.853759765625	3	404.526553	1210.55783	-0.43881	-0.00017751	1.2727	0.00051483	0.83387	0.00033732	404.52698716590703	28.328	0.47415	28.328	27.992	28.466	0.0004673					27	16	2	0	0	0	0.41411	1	4857	4857		4.7159	0	1	146740	+		31704	22374	18306	18307	39034	39034					-0.039027572353234063
PAAQQPRGH	9	Unmodified	_PAAQQPRGH_					0	0	0		ENST00000479540.5_1_20:62204354-62204564:-|nuORF	ENST00000479540.5_1_20:62204354-62204564:-|nuORF	ENST00000479540.5_1_20:62204354-62204564:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2516174316406	2	481.251757	960.488962	-0.12891	-6.2038E-05	0.11545	5.5559E-05	-0.013463	-6.479E-06	481.2517525653087	13.837	0.65369	13.837	13.567	14.221	0					42	22	3	0	0	0	0.25526	1	531	531		7.9102	0	1	291060			31705	10993	18307	18308	39035	39035					0.007136680462849654
PAARPKDKVEP	11	Unmodified	_PAARPKDKVEP_					0	0	0			REV__nc|ENSG00000167978|Q9UQ35-2|SRRM2	REV__nc|ENSG00000167978|Q9UQ35-2|SRRM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2312927246094	3	403.2313	1206.67207	-0.28746	-0.00011591	1.6186	0.00065268	1.3312	0.00053677	403.23210030898935	18.999	1.2686	18.999	18.332	19.6	0					54	44	2	0	0	0	0.33326	1	2143	2143		1.4551	0.12547	1	57849	+		31706	17426	18308	18309	39036	39036					0.07700177317406087
PAARPKDKVEP	11	Unmodified	_PAARPKDKVEP_					0	0	0			REV__nc|ENSG00000167978|Q9UQ35-2|SRRM2	REV__nc|ENSG00000167978|Q9UQ35-2|SRRM2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	403.2313	1206.67207	-0.33536	-0.00013523	1.243	0.00050122	0.90764	0.00036599	403.2319726792602	18.983	1.0197	18.866	18.44	19.46	-0.11739	-0.06664	-0.00019206	NaN	1.4551	59	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37712	+		31707	17426	18308	18309							0.07700177317406087
PAARRGAGQP	10	Unmodified	_PAARRGAGQP_					0	0	0			REV__ENST00000563592.5_1_15:73076030-73076351:+|nuORF	REV__ENST00000563592.5_1_15:73076030-73076351:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.28765869140625	2	490.772857	979.531161	0.20944	0.00010279	1.5489	0.00076017	1.7584	0.00086296	490.773801769776	24.997	0.44119	24.941	24.719	25.16	-0.055931					22	15	2	0	0	0	0.32054	1	3907	3907		3.2813	0	1	54842	+		31708	22332	18309	18310	39037	39037					0.04057643454666504
PAARRLRG	8	Unmodified	_PAARRLRG_					0	0	0			REV__ENST00000478597.5_1_9:140007734-140009165:-|nuORF	REV__ENST00000478597.5_1_9:140007734-140009165:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.781494140625	2	448.780485	895.546417	0.38979	0.00017493	0.86818	0.00038962	1.258	0.00056455	448.78077647912926	21.328	0.93703	21.218	20.525	21.462	-0.10999					70	32	3	0	0	0	0.45851	1	2762	2762		2.8892	0	1	294260	+		31709	21457	18310	18311	39038	39038					0.0944655504252978
PAARRLYWDD	10	Unmodified	_PAARRLYWDD_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2431335449219	3	421.5474	1261.62037	-0.24881	-0.00010489	3.1071	0.0013098	2.8583	0.0012049	421.54841178760637	15.815	0.18606	15.815	15.706	15.892	0					8	6	2	0	0	0	0.32051	1	1147	1147		3.8763	0.80407	1	19491			31710	976	18311	18312	39039	39039					2.4336235355804092E-05
PAARRRRARG	10	Unmodified	_PAARRRRARG_					0	0	0			REV__ENST00000560493.5_1_15:100105658-100138700:+|nuORF	REV__ENST00000560493.5_1_15:100105658-100138700:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.8590698242188	2	583.858121	1165.70169	0.34029	0.00019868	0.70911	0.00041402	1.0494	0.0006127	583.8589150555797	88.376	1.2163	88.465	87.95	89.166	0.089195					180	55	5	0	0	0	0.38515	1	23321	23321		6.2058	0	1	1672300	+		31711	22297	18312	18313	39040	39040					0.1254659889677896
PAAVNPMKFA	10	Unmodified	_PAAVNPMKFA_					0	0	0		ENSG00000111011|ENST00000331738|RSRC2;ENST00000392442.6_1_12:122990076-122998315:-|nuORF;ENST00000433877.6_1_12:122990076-123005058:-|nuORF;nc|ENSG00000111011|Q7L4I2-2|RSRC2;ENST00000531389.2_1_12:122991779-122992905:-|nuORF	ENSG00000111011|ENST00000331738|RSRC2	ENSG00000111011|ENST00000331738|RSRC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3034057617188	2	523.278595	1044.54264	0.038557	2.0176E-05	-1.835	-0.00096021	-1.7964	-0.00094003	523.2777763171466	12.916	0.34436	12.849	12.702	13.047	-0.067496					24	11	3	0	0	0	0.32033	1	292	292		3.5965	1.2938	1	64525			31712	2341	18313	18314	39041	39041					0.02214704433777115
PAAVNRIK	8	Unmodified	_PAAVNRIK_					0	0	0			REV__ENSG00000083544|ENST00000377881|TDRD3	REV__ENSG00000083544|ENST00000377881|TDRD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.23175048828125	2	434.771794	867.529036	-0.23251	-0.00010109	-1.7094	-0.00074318	-1.9419	-0.00084427	434.77126690073845	22.835	0.56974	22.747	22.568	23.138	-0.087608					27	19	2	0	0	0	0.34297	1	3306	3306		2.8892	0	1	44589	+		31713	13935	18314	18315	39042	39042					0.08997214716839608
PAAWLQLI	8	Unmodified	_PAAWLQLI_					0	0	0		ENST00000520262.5_1_8:42358674-42358761:-|nuORF	ENST00000520262.5_1_8:42358674-42358761:-|nuORF	ENST00000520262.5_1_8:42358674-42358761:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2872619628906	2	456.271096	910.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.25	1	50.25	49.75	50.75	0								0	0	0	0.34461	1	11640	11640		17.087	1.3183	1				31714	11472	18315	18316	39043	39043					0.06879580628105941
PACDVDPVSHV	11	Unmodified	_PACDVDPVSHV_					0	0	0			REV__ENST00000587700.1_1_19:6190281-6190371:-|nuORF	REV__ENST00000587700.1_1_19:6190281-6190371:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.8090209960938	2	569.763506	1137.51246	0.10327	5.8841E-05	1.1005	0.00062703	1.2038	0.00068587	569.7640961902658	22.735	0.65111	22.691	22.409	23.06	-0.044867					38	22	2	0	0	0	0.33318	1	3166	3166		1.3295	0	1	57165	+		31715	22536	18316	18317	39044	39044					-0.05079699022076056
PACPHWGL	8	Unmodified	_PACPHWGL_					0	0	0		ENST00000591434.1_1_17:43311493-43313776:+|nuORF	ENST00000591434.1_1_17:43311493-43313776:+|nuORF	ENST00000591434.1_1_17:43311493-43313776:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2420654296875	2	440.710348	879.406143	-0.068207	-3.006E-05	2.1817	0.00096148	2.1135	0.00093142	440.71134529803345	23.329	0.24416	23.242	23.108	23.353	-0.087608					12	8	2	0	0	0	0.34297	1	3412	3412		6.3541	0	1	15599			31716	12183	18317	18318	39045	39045					-0.03838365006083677
PACPHWGL	8	Unmodified	_PACPHWGL_					0	0	0		ENST00000591434.1_1_17:43311493-43313776:+|nuORF	ENST00000591434.1_1_17:43311493-43313776:+|nuORF	ENST00000591434.1_1_17:43311493-43313776:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	440.710348	879.406143	-0.082392	-3.6311E-05	2.6557	0.0011704	2.5733	0.0011341	440.71132606842616	23.265	0.22621	23.265	23.11	23.336	0	0.011652	0.00018861	NaN	6.3541	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22974			31717	12183	18317	18318							-0.03838365006083677
PACSRCLRWE	10	Unmodified	_PACSRCLRWE_					0	0	0		ENST00000360900.10_3_16:86565809-86565971:-|nuORF	ENST00000360900.10_3_16:86565809-86565971:-|nuORF	ENST00000360900.10_3_16:86565809-86565971:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.2323303222656	3	407.526954	1219.55903	-0.4147	-0.000169	2.5187	0.0010264	2.104	0.00085743	407.52789865681325	12.984	0.18455	12.984	12.874	13.058	0					9	6	2	0	0	0	0.32112	1	290	290		0.77653	0	1	19015			31718	9686	18318	18319	39046	39046					-0.0419653767175987
PADLEKRRQVF	11	Unmodified	_PADLEKRRQVF_					0	0	0		nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4	nc|ENSG00000058668|P23634|ATP2B4	nc|ENSG00000058668|P23634|ATP2B4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2663879394531	3	453.589487	1357.74663	0.43924	0.00019924	-0.18784	-8.52E-05	0.25141	0.00011404	453.58934735820213	47.306	0.69744	47.306	46.961	47.658	0					70	24	4	0	0	0	0.3325	1	10631	10631		4.1166	1.4854	1	1271700			31719	735	18319	18320	39047	39047					0.08206940128775386
PADLEKRRQVF	11	Unmodified	_PADLEKRRQVF_					0	0	0		nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4	nc|ENSG00000058668|P23634|ATP2B4	nc|ENSG00000058668|P23634|ATP2B4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.26629638671875	3	453.589487	1357.74663	0.14158	6.4218E-05	0.044538	2.0202E-05	0.18611	8.442E-05	453.58937781209386	47.156	0.7216	47.209	46.929	47.651	0.052574					64	26	3	0	0	0	0.32951	1	10613	10613		7.0371	0.80273	1	1452100			31720	735	18319	18320	39048	39048					0.08206940128775386
PADLSEFKEMT	11	Unmodified	_PADLSEFKEMT_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.245849609375	3	423.200678	1266.5802	-0.062124	-2.6291E-05	-3.1969	-0.0013529	-3.259	-0.0013792	423.1984466581991	24.252	0.47465	24.179	23.852	24.327	-0.072559					24	15	2	0	0	0	0.33287	1	3706	3706		2.8433	0.75728	1	75304			31721	4330	18320	18321	39049	39049					-0.042422938819299816
PAEPVLRFYF	10	Unmodified	_PAEPVLRFYF_					0	0	0			REV__ENSG00000149654|ENST00000537909|CDH22	REV__ENSG00000149654|ENST00000537909|CDH22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.8704833984375	3	413.557125	1237.64954	0.016674	6.8958E-06	0.12239	5.0616E-05	0.13907	5.7512E-05	413.5567952485632	30.548	0.41988	30.548	30.255	30.674	0					19	14	2	0	0	0	0.32051	1	5597	5597		3.8763	0.80407	1	84093	+		31722	16481	18321	18322	39050	39050					0.04022577919795367
PAEQHPVL	8	Unmodified	_PAEQHPVL_					0	0	0		ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	446.2320556640625	2	445.74016	889.465767	0.39281	0.00017509	-0.46477	-0.00020717	-0.071965	-3.2078E-05	445.74000808012426	29.986	0.78745	29.986	29.521	30.309	0					64	27	4	0	0	0	0.21281	1	5383	5383		56.541	0	1	684190			31723	8404	18322	18323	39051	39051					0.016612292089462244
PAEWPRGRRA	10	Unmodified	_PAEWPRGRRA_					0	0	0			REV__nc|ENSG00000162458|Q8WUP2-3|FBLIM1	REV__nc|ENSG00000162458|Q8WUP2-3|FBLIM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.3258056640625	2	598.325788	1194.63702	0.17854	0.00010683	-0.41394	-0.00024767	-0.2354	-0.00014084	598.3255440809098	96.994	0.55444	96.994	96.816	97.37	0					84	51	3	0	0	0	0.41085	1	25923	25923		1.4819	0.15237	1	102720	+		31724	16984	18323	18324	39052	39052					0.04748979300143219
PAFALLRQGKL	11	Unmodified	_PAFALLRQGKL_					0	0	0			REV__ENST00000233616.8_1_2:74688242-74688362:-|nuORF	REV__ENST00000233616.8_1_2:74688242-74688362:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2386779785156	3	405.252036	1212.73428	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.842	1	21.742	21.242	22.242	-0.10034								0	0	0	0.37452	1	2966	2966		2.8433	0.75728	1		+		31725	19476	18324	18325	39053	39053					0.13641948456415776
PAGAPHKK	8	Unmodified	_PAGAPHKK_					0	0	0			REV__ENST00000453072.5_1_3:184056644-184059926:+|nuORF	REV__ENST00000453072.5_1_3:184056644-184059926:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2158203125	2	403.237587	804.460622	-0.25556	-0.00010305	1.1825	0.00047683	0.92694	0.00037378	403.2380756655226	22.452	0.60313	22.452	22.16	22.763	0					33	20	2	0	0	0	0.34218	1	3120	3120		9.3474	8.6571	1	73670	+		31726	21135	18325	18326	39054	39054					0.050569701369909126
PAGAPHKK	8	Unmodified	_PAGAPHKK_					0	0	0			REV__ENST00000453072.5_1_3:184056644-184059926:+|nuORF	REV__ENST00000453072.5_1_3:184056644-184059926:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	403.237587	804.460622	-0.33585	-0.00013543	1.3256	0.00053455	0.98979	0.00039912	403.2381828826524	22.629	0.71462	22.542	22.138	22.853	-0.087608	0.027847	1.4005E-05	NaN	9.3474	41	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69313	+		31727	21135	18325	18326							0.050569701369909126
PAGAPHKK	8	Unmodified	_PAGAPHKK_					0	0	0			REV__ENST00000453072.5_1_3:184056644-184059926:+|nuORF	REV__ENST00000453072.5_1_3:184056644-184059926:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	403.237587	804.460622	-0.31485	-0.00012696	1.4299	0.00057659	1.115	0.00044963	403.23810605604956	22.592	0.63521	22.547	22.238	22.873	-0.044867	0.033513	9.8079E-05	NaN	9.3474	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78224	+		31728	21135	18325	18326							0.050569701369909126
PAGATQARALE	11	Unmodified	_PAGATQARALE_					0	0	0		ENST00000579186.1_1_17:30368040-30368955:+|nuORF	ENST00000579186.1_1_17:30368040-30368955:+|nuORF	ENST00000579186.1_1_17:30368040-30368955:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.291259765625	2	542.790912	1083.56727	0.39293	0.00021328	-0.51358	-0.00027877	-0.12065	-6.5487E-05	542.7909893755856	26.757	0.70283	26.757	26.469	27.172	0					65	24	4	0	0	0	0.29252	1	4434	4434		28.495	2.4738	1	461480			31729	12068	18326	18327	39055	39055					0.028830558408117213
PAGEDRQAEV	10	Unmodified	_PAGEDRQAEV_					0	0	0		ENST00000546378.1_1_12:54370099-54370336:+|nuORF	ENST00000546378.1_1_12:54370099-54370336:+|nuORF	ENST00000546378.1_1_12:54370099-54370336:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.299072265625	2	536.256902	1070.49925	0.37431	0.00020072	2.7676	0.0014842	3.1419	0.0016849	536.2571580914753	18.088	0.43313	18.088	17.93	18.363	0					30	14	3	0	0	0	0.31889	1	1803	1803		6.2058	0	1	52010			31730	11757	18327	18328	39056	39056					-0.03317813809803738
PAGGPKSAESR	11	Unmodified	_PAGGPKSAESR_					0	0	0		ENST00000588460.5_1_17:74733301-74733829:+|nuORF	ENST00000588460.5_1_17:74733301-74733829:+|nuORF	ENST00000588460.5_1_17:74733301-74733829:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2996215820312	2	528.775262	1055.53597	0.41473	0.0002193	-1.0856	-0.00057403	-0.67084	-0.00035473	528.7745766533799	24.285	0.45244	24.212	23.935	24.387	-0.072559					18	14	2	0	0	0	0.33149	1	3633	3633		5.2969	0.96765	1	66174			31731	12146	18328	18329	39057	39057					0.010424828067471026
PAGHRDPGLT	10	Unmodified	_PAGHRDPGLT_					0	0	0			REV__ENSG00000185669|ENST00000332281|SNAI3	REV__ENSG00000185669|ENST00000332281|SNAI3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2270202636719	2	510.764697	1019.51484	0.16484	8.4193E-05	0.86793	0.00044331	1.0328	0.0005275	510.76497527370526	18.489	0.78998	18.489	18.188	18.978	0					53	27	3	0	0	0	0.24708	1	1869	1869		36.127	5.4905	1	367740	+		31732	18399	18329	18330	39058	39058					0.005865174978907817
PAGLSLGAAI	10	Unmodified	_PAGLSLGAAI_					0	0	0		CON__Q3SZH5	CON__Q3SZH5	CON__Q3SZH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.7450256347656	2	435.258185	868.501818	-0.10288	-4.478E-05	0.75918	0.00033044	0.6563	0.00028566	435.25853080680093	27.303	0.72731	27.291	26.711	27.438	-0.01156					35	25	2	0	0	0	0.29978	1	4575	4575		20.454	2.3186	1	48338		+	31733	234	18330	18331	39059	39059					0.062306863857997996
PAGPLIHGF	9	Unmodified	_PAGPLIHGF_					0	0	0		ENST00000265678.8_1_6:166825790-166826246:-|nuORF	ENST00000265678.8_1_6:166825790-166826246:-|nuORF	ENST00000265678.8_1_6:166825790-166826246:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.19964599609375	2	454.75307	907.491587	0.1095	4.9795E-05	-0.071675	-3.2594E-05	0.037824	1.7201E-05	454.75251273991984	46.617	0.46278	46.617	46.35	46.813	0					22	16	2	0	0	0	0.24542	1	10555	10555		5.2307	0	1	366260			31734	9051	18331	18332	39060	39060					0.03414123451238993
PAGRALPLLL	10	Unmodified	_PAGRALPLLL_					0	0	0			REV__ENSG00000134917|ENST00000257359|ADAMTS8	REV__ENSG00000134917|ENST00000257359|ADAMTS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.83184814453125	2	510.831852	1019.64915	0.35052	0.00017906	-1.3815	-0.00070569	-1.0309	-0.00052664	510.8318597890905	65.97	1.0521	65.956	65.61	66.662	-0.013588					115	36	6	0	0	0	0.18807	1	16519	16519		34.102	7.2188	1	1314600	+		31735	15711	18332	18333	39061	39061					0.14011202990604943
PAGWASERK	9	Unmodified	_PAGWASERK_					0	0	0		ENST00000296785.7_1_5:72858805-72861416:-|nuORF	ENST00000296785.7_1_5:72858805-72861416:-|nuORF	ENST00000296785.7_1_5:72858805-72861416:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.6715393066406	2	501.261791	1000.50903	0.086493	4.3355E-05	0.43615	0.00021862	0.52264	0.00026198	501.7642577698271	15.418	0.50017	15.418	15.154	15.654	0					26	16	2	0	0	0	0.25526	1	1041	1041		7.9102	2.6795	1	31295			31736	9193	18333	18334	39062	39062					0.008794189862328494
PAHVLPSAAF	10	Unmodified	_PAHVLPSAAF_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.7635803222656	2	505.276909	1008.53927	0.24853	0.00012557	0.1061	5.3612E-05	0.35463	0.00017919	505.2767863242529	66.444	2.627	66.43	65.446	68.073	-0.013596					138	93	2	0	0	0	0.25875	1	16730	16730		25.399	0	1	297950			31737	2640	18334	18335	39063	39063					0.03533777651409764
PAIIFRIAA	9	Unmodified	_PAIIFRIAA_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.24932861328125	2	486.30547	970.596387	0.33746	0.00016411	-1.5097	-0.00073418	-1.1722	-0.00057007	486.30444432235606	70.382	1.1958	70.357	69.829	71.025	-0.024872					99	42	3	0	0	0	0.1659	1	17793	17793		36.044	1.9418	1	841620			31738	6644	18335	18336	39064	39064					0.10991244927777188
PAIPGTRQAEA	11	Unmodified	_PAIPGTRQAEA_					0	0	0		SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|41|1|anti-sense	SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|41|1|anti-sense	SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|41|1|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7966918945312	2	555.798737	1109.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.28	1	114.26	113.76	114.76	-0.019096								0	0	0	0.37501	1	29681	29681		2.7352	0	1				31739	23386	18336	18337	39065	39065					0.03251342357907561
PAISFVPSL	9	Unmodified	_PAISFVPSL_					0	0	0			REV__ENST00000557516.1_1_14:47342591-47351346:-|nuORF	REV__ENST00000557516.1_1_14:47342591-47351346:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7771911621094	2	465.768386	929.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.406	1	74.459	73.959	74.959	0.052361								0	0	0	0.18374	1	19058	19058		26.884	0	1		+		31740	16013	18337	18338	39066	39066					0.054638570456290836
PAISFVPSL	9	Unmodified	_PAISFVPSL_					0	0	0			REV__ENST00000557516.1_1_14:47342591-47351346:-|nuORF	REV__ENST00000557516.1_1_14:47342591-47351346:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.76806640625	2	465.768386	929.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.363	1	74.332	73.832	74.832	-0.030655								0	0	0	0.12743	1	19039	19039		39.957	0	1		+		31741	16013	18337	18338	39067	39067					0.054638570456290836
PAIVVAITV	9	Unmodified	_PAIVVAITV_					0	0	0		ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7864990234375	2	441.786579	881.558604	0.63888	0.00028225	-0.48558	-0.00021452	0.1533	6.7727E-05	441.78629120419845	78.425	0.92393	78.394	78.009	78.933	-0.030434					70	35	3	0	0	0	0.20344	1	20350	20350		23.148	0	1	413530			31742	4614	18338	18339	39068	39068					0.11308733942314575
PAIYIVIL	8	Unmodified	_PAIYIVIL_					0	0	0		ENST00000522645.5_1_8:59543991-59572190:-|nuORF	ENST00000522645.5_1_8:59543991-59572190:-|nuORF	ENST00000522645.5_1_8:59543991-59572190:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.9325256347656	2	451.291497	900.568441	0.15306	6.9075E-05	-0.28234	-0.00012742	-0.12928	-5.8342E-05	451.29126208345804	92.588	0.43474	92.677	92.407	92.842	0.089195					35	29	2	0	0	0	0.33618	1	24561	24561		11.114	0	1	99989			31743	11502	18339	18340	39069	39069					0.11417921947690957
PAKGRVYFTYC	11	Unmodified	_PAKGRVYFTYC_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;ENST00000550968.5_1_12:112641421-112665930:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.93475341796875	3	435.553386	1303.63833	-0.28174	-0.00012271	-1.7913	-0.00078021	-2.0731	-0.00090293	435.8866894701254	27.448	0.45879	27.437	27.187	27.645	-0.011562					21	15	2	0	0	0	0.33122	1	4685	4685		4.4062	0	1	51035			31744	6689	18340	18341	39070	39070					-0.001345674459798829
PAKLHNSL	8	Unmodified	_PAKLHNSL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.5461120605469	2	440.255977	878.497401	0.053215	2.3428E-05	0.15931	7.0135E-05	0.21252	9.3563E-05	440.256046708949	26.899	0.56418	26.899	26.673	27.237	0					36	19	3	0	0	0	0.25582	1	4497	4497		49.933	13.806	1	65707			31745	2669	18341	18342	39071	39071					0.053292219628815474
PAKLHNSL	8	Unmodified	_PAKLHNSL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.54608154296875	2	440.255977	878.497401	0.016885	7.4336E-06	0.112	4.9307E-05	0.12888	5.6741E-05	440.2560165741896	26.919	0.67448	26.898	26.592	27.266	-0.02141					38	23	2	0	0	0	0.33993	1	4519	4519		16.942	1.0951	1	98031			31746	2669	18341	18342	39072	39072					0.053292219628815474
PAKLHNSL	8	Unmodified	_PAKLHNSL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.5461120605469	2	440.255977	878.497401	0.19929	8.7739E-05	0.073945	3.2555E-05	0.27324	0.00012029	440.25592705559654	26.876	0.66706	26.864	26.651	27.318	-0.01156					33	23	2	0	0	0	0.27344	1	4499	4499		42.095	4.1206	1	83208			31747	2669	18341	18342	39073	39073					0.053292219628815474
PAKNTKLNPG	10	Unmodified	_PAKNTKLNPG_					0	0	0			REV__ENST00000555168.1_1_X:119270955-119378696:-|nuORF	REV__ENST00000555168.1_1_X:119270955-119378696:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2982788085938	2	520.298373	1038.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.937	1	20.884	20.384	21.384	-0.05291								0	0	0	0.35611	1	2688	2688		12.241	0	1		+		31748	22246	18342	18343	39074	39074					0.064445477088384
PAKQKKGAE	9	Unmodified	_PAKQKKGAE_					0	0	0			REV__nc|ENSG00000092203|O94842-3|TOX4	REV__nc|ENSG00000092203|O94842-3|TOX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7615966796875	2	478.779816	955.545079	-0.0058217	-2.7873E-06	-2.2121	-0.0010591	-2.2179	-0.0010619	478.7790355390357	25.857	0.13477	25.857	25.741	25.875	0					5	4	2	0	0	0	0.25622	1	4146	4146		7.2892	1.5288	1	59216	+		31749	14080	18343	18344	39075	39075					0.0655287616308442
PAKRLRLI	8	Unmodified	_PAKRLRLI_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.8332824707031	2	483.832186	965.649819	-0.14439	-6.9861E-05	0.72333	0.00034997	0.57894	0.00028011	483.8324211507515	39.221	0.61073	39.221	38.958	39.569	0					53	21	3	0	0	0	0.41097	1	8354	8354		18.135	4.6271	1	1180700			31750	2293	18344	18345	39076	39076					0.1656204243031425
PALAQRTR	8	Unmodified	_PALAQRTR_					0	0	0		ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENST00000476284.1_1_22:50964673-50968379:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7723388671875	2	456.772326	911.530098	0.1123	5.1296E-05	-0.2198	-0.0001004	-0.1075	-4.9104E-05	456.7722619871898	79.841	1.6477	79.841	79.103	80.751	0					165	63	5	0	0	0	0.41097	6	20690	20642;20690;20730;20779;20824;20872		18.135	0	1	8681600			31751	10944	18345	18346	39077;39078;39079;39080;39081;39082	39078					0.07079429085740685
PALAQRTR	8	Unmodified	_PALAQRTR_					0	0	0		ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENST00000476284.1_1_22:50964673-50968379:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7723693847656	2	456.772326	911.530098	0.16868	7.7048E-05	-0.27619	-0.00012615	-0.10751	-4.9107E-05	456.772225395566	79.764	1.6598	79.825	79.141	80.801	0.061417					173	66	5	0	0	0	0.41097	3	20653	20653;20704;20745		18.135	0	1	7989000			31752	10944	18345	18346	39083;39084;39085	39083					0.07079429085740685
PALAQRTR	8	Unmodified	_PALAQRTR_					0	0	0		ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENST00000476284.1_1_22:50964673-50968379:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7723083496094	2	456.772326	911.530098	0.20085	9.1745E-05	-0.32098	-0.00014662	-0.12013	-5.4871E-05	456.7722224287445	79.847	2.635	79.818	78.25	80.885	-0.028931					217	101	4	0	0	0	0.41097	5	20679	20631;20679;20727;20772;20828		18.135	0	1	10203000			31753	10944	18345	18346	39086;39087;39088;39089;39090	39087					0.07079429085740685
PALATRNP	8	Unmodified	_PALATRNP_					0	0	0		ENST00000602153.5_1_19:39923881-39923947:-|nuORF	ENST00000602153.5_1_19:39923881-39923947:-|nuORF	ENST00000602153.5_1_19:39923881-39923947:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.8921203613281	2	420.240327	838.466101	-0.14112	-5.9303E-05	-0.27641	-0.00011616	-0.41753	-0.00017546	420.24011371179444	22.987	0.75385	22.9	22.599	23.353	-0.08761					39	26	2	0	0	0	0.34218	1	3324	3324		5.2307	0	1	46166			31754	12263	18346	18347	39091	39091					0.04040648928787505
PALAWRLLLET	11	Unmodified	_PALAWRLLLET_					0	0	0			REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8825073242188	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.511	1	92.6	92.1	93.1	0.089195								0	0	0	0.36517	1	24603	24603		4.897	1.9018	1		+		31755	23203	18347	18348	39092	39092					0.11490511391002656
PALCPASRD	9	Unmodified	_PALCPASRD_					0	0	0		ENST00000538070.1_1_12:109972254-109972584:+|nuORF	ENST00000538070.1_1_12:109972254-109972584:+|nuORF	ENST00000538070.1_1_12:109972254-109972584:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7976989746094	2	465.229102	928.443651	-0.050146	-2.333E-05	-0.24429	-0.00011365	-0.29444	-0.00013698	465.2291009784353	39.04	1.1779	39.132	38.429	39.607	0.09267					61	42	2	0	0	0	0.23783	1	8237	8237		18.135	3.5533	1	184850			31756	11697	18348	18349	39093	39093					-0.023433185311318994
PALELGPRN	9	Unmodified	_PALELGPRN_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.25225830078125	2	483.771991	965.529429	-0.077749	-3.7613E-05	-0.056591	-2.7377E-05	-0.13434	-6.499E-05	483.77187919659605	13.907	0.43625	13.841	13.661	14.098	-0.066068					25	14	2	0	0	0	0.26068	1	603	603		3.2813	0.28607	1	191200			31757	959	18349	18350	39094	39094					0.045285896460427466
PALEVSKI	8	Unmodified	_PALEVSKI_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.23419189453125	2	428.760561	855.506569	-0.08682	-3.7225E-05	-0.5108	-0.00021901	-0.59762	-0.00025624	428.7603658609429	62.824	0.56148	62.816	62.49	63.051	-0.0085526					28	20	2	0	0	0	0.31934	1	15464	15464		12.532	0	1	113780	+		31758	19094	18350	18351	39095	39095					0.07303570528563341
PALGLQSAL	9	Unmodified	_PALGLQSAL_					0	0	0		nc|ENSG00000117632|P16949-2|STMN1	nc|ENSG00000117632|P16949-2|STMN1	nc|ENSG00000117632|P16949-2|STMN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.7451171875	2	435.258185	868.501818	-0.10288	-4.478E-05	0.75918	0.00033044	0.6563	0.00028566	435.25853080680093	27.303	0.72731	27.291	26.711	27.438	-0.01156					35	25	2	0	0	0	0.25314	1	4619	4619		15.847	1.2655	1	48338			31759	12675	18351	18352	39096	39096					0.062306863857997996
PALGLRGRGRA	11	Unmodified	_PALGLRGRGRA_					0	0	0			REV__ENST00000291442.3_1_19:17351565-17356474:-|nuORF	REV__ENST00000291442.3_1_19:17351565-17356474:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3436889648438	2	562.343981	1122.67341	0.20628	0.000116	-0.76416	-0.00042972	-0.55788	-0.00031372	562.3435873199479	80.295	3.1196	80.36	79.444	82.564	0.065094					520	132	5	0	0	0	0.41896	1	21277	21277		8.7454	1.4562	1	13068000	+		31760	19756	18352	18353	39097	39097					0.11697856196838075
PALGPVRRQR	10	Unmodified	_PALGPVRRQR_					0	0	0		ENST00000318249.9_1_1:21771676-21795261:+|nuORF	ENST00000318249.9_1_1:21771676-21795261:+|nuORF	ENST00000318249.9_1_1:21771676-21795261:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3516235351562	2	575.351806	1148.68906	0.35494	0.00020422	0.31451	0.00018095	0.66945	0.00038517	575.351324539338	89.925	0.74402	89.926	89.692	90.436	0.0003891					126	60	3	0	0	0	0.32033	1	23779	23779		3.5965	0	1	432150			31761	9366	18353	18354	39098	39098					0.12066142713888439
PALGWPWAL	9	Unmodified	_PALGWPWAL_					0	0	0		ENST00000467586.5_1_17:74079731-74084011:-|nuORF	ENST00000467586.5_1_17:74079731-74084011:-|nuORF	ENST00000467586.5_1_17:74079731-74084011:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7760009765625	2	505.776545	1009.53854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.219	1	20.219	19.719	20.719	0								0	0	0	0.26258	1	2471	2471		2.3027	0	1				31762	10824	18354	18355	39099	39099					0.034149830023466166
PALHGDSL	8	Unmodified	_PALHGDSL_					0	0	0		ENSG00000133937|ENST00000238558|GSC	ENSG00000133937|ENST00000238558|GSC	ENSG00000133937|ENST00000238558|GSC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.21966552734375	2	405.211235	808.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.501	1	28.501	28.001	29.001	0.0004673								0	0	0	0.35014	1	4976	4976		14.582	3.4672	1				31763	3739	18355	18356	39100	39100					-0.003950327164830014
PALISYLK	8	Unmodified	_PALISYLK_					0	0	0		ENST00000603027.5_2_10:75563086-75563657:-|nuORF	ENST00000603027.5_2_10:75563086-75563657:-|nuORF	ENST00000603027.5_2_10:75563086-75563657:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.9330139160156	2	452.778754	903.542954	0.49424	0.00022378	-0.57515	-0.00026042	-0.080917	-3.6637E-05	452.7783754485272	33.847	0.51007	33.847	33.538	34.048	0					41	18	3	0	0	0	0.34337	1	6551	6551		5.2307	0	1	149200			31764	12271	18356	18357	39101	39101					0.08732447425279588
PALKLRLR	8	Unmodified	_PALKLRLR_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.8323669433594	2	483.832186	965.649819	-0.14439	-6.9861E-05	0.72333	0.00034997	0.57894	0.00028011	483.8324211507515	39.221	0.61073	39.221	38.958	39.569	0					53	21	3	0	0	0	0.042326	2	8300	8250;8300		81.864	28.288	1	1180700			31765	2427	18357	18358	39102;39103	39103					0.1656204243030288
PALKLRLR	8	Unmodified	_PALKLRLR_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.83233642578125	2	483.832186	965.649819	0.054188	2.6218E-05	0.61142	0.00029582	0.66561	0.00032204	483.8323918486923	39.166	0.52056	39.259	39.027	39.548	0.09267					47	18	3	0	0	0	0.050494	2	8227	8227;8277		77.984	17.595	1	1279700			31766	2427	18357	18358	39104;39105	39104					0.1656204243030288
PALKLRLR	8	Unmodified	_PALKLRLR_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.83245849609375	2	483.832186	965.649819	0.38513	0.00018634	0.26499	0.00012821	0.65012	0.00031455	483.8321904170564	39.129	0.52502	39.228	38.986	39.511	0.099407					51	18	3	0	0	0	0.13961	1	8262	8262		53.576	11.481	1	1304800			31767	2427	18357	18358	39106	39106					0.1656204243030288
PALKLRLRFI	10	Unmodified	_PALKLRLRFI_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2705993652344	3	409.608042	1225.8023	0.44034	0.00018037	-0.9829	-0.0004026	-0.54256	-0.00022224	409.60768772823275	77.53	0.43706	77.585	77.43	77.867	0.055412					20	15	2	0	0	0	0.3213	1	19982	19982		0.69767	0	1	90360			31768	2427	18358	18359	39107	39107					0.1984281810707671
PALKLRLRFI	10	Unmodified	_PALKLRLRFI_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.27044677734375	3	409.608042	1225.8023	-0.060923	-2.4955E-05	-0.31574	-0.00012933	-0.37667	-0.00015429	409.60790772078497	76.85	0.71304	76.903	76.32	77.033	0.053413					38	25	2	0	0	0	0.32051	1	19838	19838		3.8763	2.1341	1	89066			31769	2427	18358	18359	39108	39108					0.1984281810707671
PALKVFKNI	9	Unmodified	_PALKVFKNI_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3101806640625	2	515.326402	1028.63825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.826	1	69.892	69.392	70.392	0.066048								0	0	0	0.23091	1	17660	17660		12.532	3.9383	1				31770	2862	18359	18360	39109	39109					0.1250780061632213
PALKVFKNI	9	Unmodified	_PALKVFKNI_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3101806640625	2	515.326402	1028.63825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.976	1	70.042	69.542	70.542	0.066048								0	0	0	0.23091	1	17706	17706		12.532	0.89125	1				31771	2862	18359	18360	39110	39110					0.1250780061632213
PALLKIAREPM	11	Unmodified	_PALLKIAREPM_					0	0	0		ENST00000358127.8_1_9:36840226-36840553:-|nuORF	ENST00000358127.8_1_9:36840226-36840553:-|nuORF	ENST00000358127.8_1_9:36840226-36840553:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8692016601562	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.313	1	96.313	95.813	96.813	0								0	0	0	0.37609	1	25729	25729		2.4985	1.0166	1				31772	9644	18360	18361	39111	39111					0.11231169001871422
PALLKIAREPM	11	Unmodified	_PALLKIAREPM_					0	0	0		ENST00000358127.8_1_9:36840226-36840553:-|nuORF	ENST00000358127.8_1_9:36840226-36840553:-|nuORF	ENST00000358127.8_1_9:36840226-36840553:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.869384765625	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.564	1	99.615	99.115	100.12	0.050888								0	0	0	0.37609	1	26629	26629		2.4985	0.84587	1				31773	9644	18360	18361	39112	39112					0.11231169001871422
PALLKIAREPM	11	Unmodified	_PALLKIAREPM_					0	0	0		ENST00000358127.8_1_9:36840226-36840553:-|nuORF	ENST00000358127.8_1_9:36840226-36840553:-|nuORF	ENST00000358127.8_1_9:36840226-36840553:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8692626953125	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.394	1	96.39	95.89	96.89	-0.0038147								0	0	0	0.37609	1	25778	25778		2.4985	0.84587	1				31774	9644	18360	18361	39113	39113					0.11231169001871422
PALLVSQI	8	Unmodified	_PALLVSQI_					0	0	0		ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.76300048828125	2	420.763104	839.511654	-0.062701	-2.6382E-05	-0.13573	-5.7112E-05	-0.19843	-8.3494E-05	420.7630388795964	67.408	0.90527	67.408	66.937	67.842	0					69	31	3	0	0	0	0.064917	2	16924	16924;16973		71.134	0	1	651990			31775	7682	18361	18362	39114;39115	39114					0.08547874391183541
PALLVSQI	8	Unmodified	_PALLVSQI_					0	0	0		ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.76300048828125	2	420.763104	839.511654	0.040639	1.7099E-05	-0.19367	-8.149E-05	-0.15303	-6.439E-05	420.7630099637824	67.35	0.98148	67.428	66.82	67.802	0.078041					75	34	3	0	0	0	0.072895	2	16893	16893;16947		67.344	0	1	608600			31776	7682	18361	18362	39116;39117	39116					0.08547874391183541
PALLVSQI	8	Unmodified	_PALLVSQI_					0	0	0		ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.7630615234375	2	420.763104	839.511654	-0.059249	-2.493E-05	-0.1501	-6.3158E-05	-0.20935	-8.8087E-05	420.7630545955492	67.442	0.91779	67.426	66.921	67.838	-0.016296					74	31	3	0	0	0	0.064917	1	16901	16901		71.134	0	1	582940			31777	7682	18361	18362	39118	39118					0.08547874391183541
PALPLLCLLL	10	Unmodified	_PALPLLCLLL_					0	0	0			REV__ENSG00000126243|ENST00000246529|LRFN3	REV__ENSG00000126243|ENST00000246529|LRFN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.341064453125	2	533.340664	1064.66677	0.41796	0.00022292	-0.04323	-2.3057E-05	0.37473	0.00019986	533.3405756964123	88.795	1.4149	88.885	88.548	89.963	0.089203					227	80	5	0	0	0	0.40888	1	23635	23635		1.8442	0	1	5180400	+		31778	15305	18362	18363	39119	39119					0.13702782201266928
PALPLLFL	8	Unmodified	_PALPLLFL_					0	0	0		ENST00000361915.7_2_1:100315840-100315912:+|nuORF;ENST00000517554.1_1_18:8784664-8786368:+|nuORF	ENST00000361915.7_2_1:100315840-100315912:+|nuORF	ENST00000361915.7_2_1:100315840-100315912:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.76812744140625	2	442.286214	882.557876	0.013068	5.7796E-06	0.78289	0.00034626	0.79596	0.00035204	442.28664030075066	95.682	0.52036	95.759	95.519	96.04	0.077408					71	41	2	0	0	0	0.34297	1	25627	25627		6.3541	0	1	222350			31779	9703	18363	18364	39120	39120					0.11189939293285533
PALPLLFL	8	Unmodified	_PALPLLFL_					0	0	0		ENST00000361915.7_2_1:100315840-100315912:+|nuORF;ENST00000517554.1_1_18:8784664-8786368:+|nuORF	ENST00000361915.7_2_1:100315840-100315912:+|nuORF	ENST00000361915.7_2_1:100315840-100315912:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7680358886719	2	442.286214	882.557876	0.26727	0.00011821	0.64631	0.00028585	0.91358	0.00040406	442.28667460984013	95.825	0.46603	95.821	95.596	96.062	-0.0038147					82	40	3	0	0	0	0.34297	1	25666	25666		6.3541	0	1	162150			31780	9703	18363	18364	39121	39121					0.11189939293285533
PALPLLFL	8	Unmodified	_PALPLLFL_					0	0	0		ENST00000361915.7_2_1:100315840-100315912:+|nuORF;ENST00000517554.1_1_18:8784664-8786368:+|nuORF	ENST00000361915.7_2_1:100315840-100315912:+|nuORF	ENST00000361915.7_2_1:100315840-100315912:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	442.286214	882.557876	-0.040217	-1.7788E-05	0.88491	0.00039138	0.84469	0.0003736	442.28669250292614	95.857	0.55471	95.857	95.587	96.142	0	0.044927	7.5646E-05	NaN	6.3541	87	54	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154730			31781	9703	18363	18364							0.11189939293285533
PALQARTR	8	Unmodified	_PALQARTR_					0	0	0		ENST00000592689.5_1_2:179402342-179404892:+|nuORF	ENST00000592689.5_1_2:179402342-179404892:+|nuORF	ENST00000592689.5_1_2:179402342-179404892:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7724609375	2	456.772326	911.530098	0.18903	8.6345E-05	-0.13417	-6.1284E-05	0.054865	2.5061E-05	456.77236939443594	82.283	1.2922	82.283	81.608	82.9	0					70	48	2	0	0	0	0.45431	1	21504	21504		4.3292	0	1	555830			31782	12202	18364	18365	39122	39122					0.07079429085740685
PALQQQLQ	8	Unmodified	_PALQQQLQ_					0	0	0		ENST00000592414.1_1_19:3053819-3054095:-|nuORF	ENST00000592414.1_1_19:3053819-3054095:-|nuORF	ENST00000592414.1_1_19:3053819-3054095:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.8008728027344	2	463.258717	924.50288	0.18961	8.7838E-05	-0.15655	-7.2525E-05	0.033056	1.5313E-05	463.2585598930055	38.269	0.55656	38.366	38.093	38.65	0.097527					25	19	2	0	0	0	0.34046	1	7976	7976		14.582	5.1986	1	64103			31783	12196	18365	18366	39123	39123					0.03760900754718932
PALRGTKW	8	Unmodified	_PALRGTKW_					0	0	0		ENST00000448963.5_1_10:91597071-91597797:+|nuORF	ENST00000448963.5_1_10:91597071-91597797:+|nuORF	ENST00000448963.5_1_10:91597071-91597797:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.95098876953125	2	464.771794	927.529036	-0.25125	-0.00011677	1.8703	0.00086926	1.619	0.00075249	464.7724855642853	14.741	0.1779	14.636	14.592	14.77	-0.10466					8	5	2	0	0	0	0.34419	1	818	818		1.8442	0	1	16613			31784	10624	18366	18367	39124	39124					0.062372147168503034
PALRSLWMKA	10	Unmodified	_PALRSLWMKA_					0	0	0		ENST00000490035.6_1_3:116163950-116163998:-|nuORF	ENST00000490035.6_1_3:116163950-116163998:-|nuORF	ENST00000490035.6_1_3:116163950-116163998:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8338623046875	2	586.834069	1171.65358	0.60199	0.00035327	-0.17379	-0.00010198	0.4282	0.00025128	586.8337353080167	83.092	1.2388	83.092	82.925	84.163	0					88	48	2	0	0	0	0.40106	1	22037	22037		3.2813	1.2216	1	1424200			31785	11159	18367	18368	39125	39125					0.07462344141868016
PALSSLRAL	9	Unmodified	_PALSSLRAL_					0	0	0		LRRN4|p.L313Sfs*19|1|0.23|ENSG00000125872|chr20:6044604-6044604|G/-|frameshift_variant;ENSG00000125872|ENST00000378858|LRRN4	LRRN4|p.L313Sfs*19|1|0.23|ENSG00000125872|chr20:6044604-6044604|G/-|frameshift_variant	LRRN4|p.L313Sfs*19|1|0.23|ENSG00000125872|chr20:6044604-6044604|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.80096435546875	2	464.284734	926.554916	0.1465	6.8019E-05	-0.11496	-5.3375E-05	0.031543	1.4645E-05	464.2846559920476	38.091	0.58879	38.188	37.953	38.542	0.097527					45	20	3	0	0	0	0.22596	1	7915	7915		21.747	3.6117	1	333200			31786	3244	18368	18369	39126	39126					0.0887006416847953
PALTFPVDSLL	11	Unmodified	_PALTFPVDSLL_					0	0	0			REV__ENST00000406829.2_2_7:7812042-7917166:+|nuORF	REV__ENST00000406829.2_2_7:7812042-7917166:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8347778320312	2	586.831714	1171.64888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.178	1	84.255	83.755	84.755	0.077095								0	0	0	0.37252	1	22049	22049		3.2813	0	1		+		31787	19091	18369	18370	39127	39127					0.06991738480087406
PALTSRKTPGT	11	Unmodified	_PALTSRKTPGT_					0	0	0			REV__ENSG00000105641|ENST00000222248|SLC5A5	REV__ENSG00000105641|ENST00000222248|SLC5A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8212890625	2	564.822212	1127.62987	0.26158	0.00014775	-1.4733	-0.00083213	-1.2117	-0.00068438	564.8211294480054	81.701	0.6884	81.701	81.478	82.166	0					55	26	3	0	0	0	0.45108	1	21314	21314		4.5289	0.58447	1	498530	+		31788	14472	18370	18371	39128	39128					0.07116201909025222
PALVRALTQRN	11	Unmodified	_PALVRALTQRN_					0	0	0			REV__ENST00000492877.1_1_1:28210997-28211207:+|nuORF	REV__ENST00000492877.1_1_1:28210997-28211207:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.37353515625	2	619.870028	1237.7255	0.29543	0.00018313	-0.1832	-0.00011356	0.11223	6.9568E-05	619.8690396100932	94.564	1.5426	94.562	93.798	95.341	-0.0020142					222	130	2	0	0	0	0.46655	1	25278	25278		2.4985	1.0166	1	200390	+		31789	21629	18371	18372	39129	39129					0.11614974819917734
PAMLVPDI	8	Unmodified	_PAMLVPDI_					0	0	0			REV__ENST00000523639.5_1_6:99998829-100016472:-|nuORF	REV__ENST00000523639.5_1_6:99998829-100016472:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.234130859375	2	428.235864	854.457176	-0.017228	-7.3776E-06	-2.5704	-0.0011007	-2.5876	-0.0011081	428.234210465095	62.334	0.89707	62.431	62.12	63.017	0.096985					88	32	5	0	0	0	0.37319	1	15391	15391		22.453	1.5814	1	1087000	+		31790	14765	18372	18373	39130	39130					0.024125392480982555
PAMRLILE	8	Unmodified	_PAMRLILE_					0	0	0		nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	nc|ENSG00000168439|P31948-3|STIP1	nc|ENSG00000168439|P31948-3|STIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2459411621094	2	471.775688	941.536823	0.39646	0.00018704	-0.53857	-0.00025408	-0.14211	-6.7044E-05	471.77706755723136	19.92	0.32782	19.864	19.678	20.006	-0.055693					14	11	2	0	0	0	0.344	1	2383	2383		2.5775	0	1	30405			31791	6275	18373	18374	39131	39131					0.06371605922117851
PANPTGLLTL	10	Unmodified	_PANPTGLLTL_					0	0	0		ENST00000356798.10_1_16:30484081-30484159:+|nuORF	ENST00000356798.10_1_16:30484081-30484159:+|nuORF	ENST00000356798.10_1_16:30484081-30484159:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.79022216796875	2	498.78985	995.565146	0.70821	0.00035325	-0.020053	-1.0002E-05	0.68816	0.00034324	498.789931603062	77.558	0.80506	77.558	77.228	78.033	0					55	29	3	0	0	0	0.15113	1	20049	20049		38.615	0.64075	1	287840			31792	9625	18374	18375	39132	39132					0.06718627103043673
PANRSFYLMN	10	Unmodified	_PANRSFYLMN_					0	0	0			REV__nc|ENSG00000102890|Q96BJ8-3|ELMO3	REV__nc|ENSG00000102890|Q96BJ8-3|ELMO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.53692626953125	3	404.865852	1211.57573	-0.34093	-0.00013803	-2.3329	-0.00094451	-2.6738	-0.0010825	405.19924205956727	40.967	0.19269	41.064	41.015	41.208	0.096626					9	6	2	0	0	0	0.31911	1	8783	8783		6.6304	0	1	153710	+		31793	14338	18375	18376	39133	39133					-0.02159713514174655
PAPALDVRLV	10	Unmodified	_PAPALDVRLV_					0	0	0			REV__ENST00000252674.8_2_19:6212397-6212727:-|nuORF	REV__ENST00000252674.8_2_19:6212397-6212727:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.301025390625	2	525.818941	1049.62333	0.06637	3.4899E-05	2.282	0.0011999	2.3484	0.0012348	525.8206307623464	12.072	0.10756	12.004	11.943	12.051	-0.06806					8	5	2	0	0	0	0.32123	1	8	8		1.6526	0	1	26549	+		31794	19532	18376	18377	39134	39134					0.10050308748327552
PAPGAPLARR	10	Unmodified	_PAPGAPLARR_					0	0	0		ENSG00000184261|ENST00000327876|KCNK12	ENSG00000184261|ENST00000327876|KCNK12	ENSG00000184261|ENST00000327876|KCNK12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.3012390136719	2	503.30125	1004.58795	0.26084	0.00013128	-0.089471	-4.5031E-05	0.17137	8.625E-05	503.30116813551143	17.796	0.65118	17.796	17.537	18.188	0					41	21	2	0	0	0	0.2593	1	1721	1721		25.399	2.2509	1	425500			31795	7441	18377	18378	39135	39135					0.08583691011176597
PAPGLVEQPK	10	Unmodified	_PAPGLVEQPK_					0	0	0		nc|ENSG00000213638|Q96EY9|ADAT3;ENSG00000213638|ENST00000329478|ADAT3	nc|ENSG00000213638|Q96EY9|ADAT3	nc|ENSG00000213638|Q96EY9|ADAT3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2955932617188	2	518.295299	1034.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.209	1	91.21	90.71	91.71	0.00046539								0	0	0	0.37807	1	24200	24200		2.9952	0.49676	1				31796	8357	18378	18379	39136	39136					0.06014029477319127
PAPGPPISL	9	Unmodified	_PAPGPPISL_					0	0	0		ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	ENSG00000130940|ENST00000377022|CASZ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.9200439453125	2	424.747453	847.480354	0.16584	7.0439E-05	-0.70602	-0.00029988	-0.54018	-0.00022944	424.74728772864114	45.358	0.59727	45.418	45.166	45.763	0.059837					44	20	3	0	0	0	0.15464	1	10111	10111		38.151	0	1	509440			31797	3529	18379	18380	39137	39137					0.05051301357093507
PAPGPVPALIN	11	Unmodified	_PAPGPVPALIN_					0	0	0			REV__nc|ENSG00000102271|Q9C0H6-2|KLHL4	REV__nc|ENSG00000102271|Q9C0H6-2|KLHL4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.303466796875	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.015	1	91.016	90.516	91.516	0.00046539								0	0	0	0.32811	1	24139	24139		13.042	3.6593	1		+		31798	14316	18380	18381	39138	39138					0.0762661985700106
PAPHFPQDV	9	Unmodified	_PAPHFPQDV_					0	0	0		ENST00000597202.1_1_19:7625506-7626445:+|nuORF	ENST00000597202.1_1_19:7625506-7626445:+|nuORF	ENST00000597202.1_1_19:7625506-7626445:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.7776794433594	2	504.250892	1006.48723	0.094842	4.7824E-05	1.94	0.00097822	2.0348	0.001026	504.25169897867414	15.581	0.62815	15.581	15.319	15.947	0					34	21	2	0	0	0	0.25066	1	1116	1116		11.64	5.2862	1	40633			31799	12233	18381	18382	39139	39139					-0.01575385762339465
PAPHPAPAL	9	Unmodified	_PAPHPAPAL_					0	0	0			REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF	REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.7451477050781	2	435.745245	869.475937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.217	1	27.217	26.717	27.717	0								0	0	0	0.14247	1	4589	4589		36.466	0	1		+		31800	19580	18382	18383	39140	39140					0.03597836934170573
PAPHRASYK	9	Unmodified	_PAPHRASYK_					0	0	0		ENST00000493548.5_1_6:32122153-32123690:+|nuORF;nc|ENSG00000258388|Q9UMR5-2|PPT2;ENSG00000221988|ENST00000324816|PPT2;nc|ENSG00000258388|Q9UMR5-3|PPT2	ENST00000493548.5_1_6:32122153-32123690:+|nuORF	ENST00000493548.5_1_6:32122153-32123690:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.241455078125	2	513.777608	1025.54066	0.2982	0.00015321	-4.2324	-0.0021745	-3.9342	-0.0020213	513.7750682949875	23.872	0.42786	23.833	23.592	24.02	-0.038927					18	14	2	0	0	0	0.25706	1	3623	3623		6.7232	0.99131	1	61577			31801	8431	18383	18384	39141	39141					0.02891411740165495
PAPPGISQI	9	Unmodified	_PAPPGISQI_					0	0	0		nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.2366638183594	2	440.25036	878.486168	-0.068115	-2.9988E-05	-0.1182	-5.2038E-05	-0.18632	-8.2026E-05	440.25009987487044	23.435	0.97695	23.435	23.021	23.998	0					54	33	2	0	0	0	0.24913	1	3452	3452		12.532	0.89125	1	54675			31802	4977	18384	18385	39142	39142					0.04206399868758126
PAPRRFRRR	9	Unmodified	_PAPRRFRRR_					0	0	0			REV__ENST00000587019.5_1_19:13869900-13872373:+|nuORF	REV__ENST00000587019.5_1_19:13869900-13872373:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3711547851562	2	606.370864	1210.72718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.19	1	114.2	113.7	114.7	0.016708								0	0	0	0.26829	1	29700	29700		0	0	1		+		31803	22528	18385	18386	39143	39143					0.1302407341918297
PAPRSPLLL	9	Unmodified	_PAPRSPLLL_					0	0	0			REV__nc|ENSG00000139880|Q86UP0|CDH24	REV__nc|ENSG00000139880|Q86UP0|CDH24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.3030090332031	2	482.302927	962.591301	0.57685	0.00027822	0.22328	0.00010769	0.80013	0.0003859	482.30291329079876	50.791	0.56708	50.837	50.551	51.118	0.046574					64	20	4	0	0	0	0.16283	1	11775	11775		29.082	2.8134	1	2507500	+		31804	16011	18386	18387	39144	39144					0.10850941065177722
PAPTGPSPR	9	Unmodified	_PAPTGPSPR_					0	0	0		ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000514180.5_1_8:122652059-122653623:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2420654296875	2	440.237784	878.461016	-0.042863	-1.887E-05	-0.90181	-0.00039701	-0.94467	-0.00041588	440.2369767089673	23.511	0.43476	23.439	23.18	23.614	-0.072559					25	15	2	0	0	0	0.25938	1	3412	3412		4.3292	0	1	91109			31805	11411	18387	18388	39145	39145					0.01692345066192047
PAPTGPSPR	9	Unmodified	_PAPTGPSPR_					0	0	0		ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000514180.5_1_8:122652059-122653623:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	440.237784	878.461016	-0.07865	-3.4625E-05	-0.73991	-0.00032574	-0.81856	-0.00036036	440.2371941271704	23.388	0.41911	23.388	23.197	23.616	0	-0.033972	0.00016896	NaN	4.3292	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86819			31806	11411	18387	18388							0.01692345066192047
PAPTGPSPR	9	Unmodified	_PAPTGPSPR_					0	0	0		ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000514180.5_1_8:122652059-122653623:+|nuORF	ENST00000514180.5_1_8:122652059-122653623:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	440.237784	878.461016	0.15698	6.9106E-05	-1.0422	-0.00045881	-0.88521	-0.0003897	440.2369569795952	23.478	0.30844	23.439	23.311	23.62	-0.038927	0.017008	-9.7194E-05	NaN	4.3292	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67346			31807	11411	18387	18388							0.01692345066192047
PAPTMHWVGPD	11	Unmodified	_PAPTMHWVGPD_					0	0	0		ENSG00000173621|ENST00000309602|LRFN4	ENSG00000173621|ENST00000309602|LRFN4	ENSG00000173621|ENST00000309602|LRFN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.1901550292969	3	403.190336	1206.54918	0.11703	4.7184E-05	-1.2279	-0.00049507	-1.1108	-0.00044788	403.1901535440126	55.672	1.1313	55.743	55.245	56.376	0.070885					96	41	4	0	0	0	0.43198	1	13278	13278		7.0371	0.41363	1	1901000			31808	6736	18388	18389	39146	39146					-0.04583402405501147
PAPTRSPRLR	10	Unmodified	_PAPTRSPRLR_					0	0	0			REV__ENST00000434404.2_1_1:229406689-229407103:-|nuORF	REV__ENST00000434404.2_1_1:229406689-229407103:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8432006835938	2	575.843813	1149.67307	0.26564	0.00015297	-0.64139	-0.00036934	-0.37575	-0.00021637	575.84293819352	94.154	2.7072	94.241	93.425	96.132	0.08667					330	228	3	0	0	0	0.39009	1	25090	25090		5.2969	0	1	501450	+		31809	20983	18389	18390	39147	39147					0.10422436476960684
PARAGQLPLL	10	Unmodified	_PARAGQLPLL_					0	0	0			REV__ENST00000397412.7_1_16:1664941-1676063:+|nuORF	REV__ENST00000397412.7_1_16:1664941-1676063:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7815551757812	2	518.319109	1034.62366	0.65957	0.00034187	-2.0135	-0.0010436	-1.3539	-0.00070174	518.317819570024	83.596	0.3638	83.596	83.347	83.711	0					18	12	2	0	0	0	0.318	1	21899	21899		7.2892	2.96	1	75844	+		31810	20672	18390	18391	39148	39148					0.10773728468188892
PARGLELL	8	Unmodified	_PARGLELL_					0	0	0		ENSG00000187862|ENST00000368236|TTC24	ENSG00000187862|ENST00000368236|TTC24	ENSG00000187862|ENST00000368236|TTC24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7659606933594	2	434.766178	867.517802	-0.02736	-1.1895E-05	-0.28117	-0.00012224	-0.30853	-0.00013414	434.76596232034046	47.287	0.56159	47.339	47.038	47.599	0.052574					43	20	3	0	0	0	0.23581	1	10714	10714		38.151	0	1	593990			31811	7717	18391	18392	39149	39149					0.07874392622716186
PARGLELL	8	Unmodified	_PARGLELL_					0	0	0		ENSG00000187862|ENST00000368236|TTC24	ENSG00000187862|ENST00000368236|TTC24	ENSG00000187862|ENST00000368236|TTC24	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	434.766178	867.517802	0.54552	0.00023717	-0.43537	-0.00018928	0.11016	4.7893E-05	434.76605680342396	47.285	0.63938	47.34	47.117	47.757	0.054375	0.0056881	-0.0001908	NaN	38.151	44	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	536910			31812	7717	18391	18392							0.07874392622716186
PARGPARLL	9	Unmodified	_PARGPARLL_					0	0	0			REV__ENST00000205061.9_2_16:74484308-74484389:-|nuORF	REV__ENST00000205061.9_2_16:74484308-74484389:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.7996826171875	2	475.798343	949.582134	-0.0016108	-7.6643E-07	-0.07785	-3.7041E-05	-0.079461	-3.7807E-05	475.7982003658141	26.19	0.62829	26.19	25.9	26.528	0					50	21	3	0	0	0	0.25314	1	4226	4226		15.847	2.3393	1	306940	+		31813	19400	18392	18393	39150	39150					0.10532592499521343
PARHNSIHSP	10	Unmodified	_PARHNSIHSP_					0	0	0		THSD1|p.D742Vfs*6|1|0.1|ENSG00000136114|chr13:52377745-52377745|T/-|frameshift_variant;nc|ENSG00000136114|Q9NS62-2|THSD1;ENSG00000136114|ENST00000258613|THSD1	THSD1|p.D742Vfs*6|1|0.1|ENSG00000136114|chr13:52377745-52377745|T/-|frameshift_variant	THSD1|p.D742Vfs*6|1|0.1|ENSG00000136114|chr13:52377745-52377745|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.8043823242188	2	558.288871	1114.56319	0.14827	8.2777E-05	-0.61326	-0.00034238	-0.46499	-0.0002596	558.2887417037881	16.168	0.75334	16.106	15.892	16.646	-0.062534					63	25	4	0	0	0	0.39009	1	1347	1347		5.2969	0.39987	1	309890			31814	3943	18393	18394	39151	39151					0.010490111377976064
PARINSHVKKK	11	Unmodified	_PARINSHVKKK_					0	0	0		nc|ENSG00000170054|Q86WD7-2|SERPINA9	nc|ENSG00000170054|Q86WD7-2|SERPINA9	nc|ENSG00000170054|Q86WD7-2|SERPINA9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	639.3927612304688	2	639.39367	1276.77279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.52	1	115.54	115.04	116.04	0.018738								0	0	0	0.38126	1	30002	30002		1.1933	0	1				31815	12834	18394	18395	39152	39152					0.14547254090916795
PARPAAAPA	9	Unmodified	_PARPAAAPA_					0	0	0		ENST00000280333.9_1_10:128594024-128594090:+|nuORF	ENST00000280333.9_1_10:128594024-128594090:+|nuORF	ENST00000280333.9_1_10:128594024-128594090:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.884033203125	2	411.235045	820.455536	-0.14756	-6.0682E-05	-0.47407	-0.00019495	-0.62163	-0.00025563	411.23471424081026	19.793	0.61375	19.793	19.431	20.045	0					39	21	3	0	0	0	0.24913	1	2364	2364		7.9102	0	1	56805			31816	9113	18395	18396	39153	39153					0.03812666274359344
PARPAAAPA	9	Unmodified	_PARPAAAPA_					0	0	0		ENST00000280333.9_1_10:128594024-128594090:+|nuORF	ENST00000280333.9_1_10:128594024-128594090:+|nuORF	ENST00000280333.9_1_10:128594024-128594090:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8840026855469	2	411.235045	820.455536	0.283	0.00011638	-0.94802	-0.00038986	-0.66502	-0.00027348	411.2344646434401	19.895	0.46334	19.839	19.571	20.034	-0.055693					28	16	2	0	0	0	0.24913	1	2368	2368		7.9102	0	1	66623			31817	9113	18395	18396	39154	39154					0.03812666274359344
PARPHLIQV	9	Unmodified	_PARPHLIQV_					0	0	0		ENST00000540458.5_1_12:6956081-6956183:+|nuORF	ENST00000540458.5_1_12:6956081-6956183:+|nuORF	ENST00000540458.5_1_12:6956081-6956183:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.8001098632812	2	515.811451	1029.60835	0.29106	0.00015013	1.7413	0.00089821	2.0324	0.0010483	516.3142740387507	57.762	0.33839	57.848	57.686	58.025	0.085617					15	12	2	0	0	0	0.25202	1	13939	13939		6.7232	0	1	169870			31818	11719	18396	18397	39155	39155					0.09472861670974453
PARPRRWLAAA	11	Unmodified	_PARPRRWLAAA_					0	0	0		ENST00000473205.1_1_9:100746884-100764563:+|nuORF	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	ENST00000473205.1_1_9:100746884-100764563:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.8715209960938	2	632.872905	1263.73126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.665	1	51.674	51.174	52.174	0.0095634								0	0	0	0.36517	1	12065	12065		4.897	0.36815	1				31819	10904	18397	18398	39156	39156					0.10994118122266627
PARPSPSSP	9	Unmodified	_PARPSPSSP_					0	0	0			REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2348327636719	2	448.235242	894.45593	0.047937	2.1487E-05	-0.46118	-0.00020672	-0.41324	-0.00018523	448.2350047225645	18.783	1.3342	18.783	17.96	19.294	0					115	46	4	0	0	0	0.21447	1	2014	2014		21.537	0	1	341650	+		31820	17175	18398	18399	39157	39157					0.004480412035718473
PARPSPSSP	9	Unmodified	_PARPSPSSP_					0	0	0			REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.2349548339844	2	448.235242	894.45593	-0.0066323	-2.9728E-06	-0.32404	-0.00014525	-0.33067	-0.00014822	448.235072935805	18.932	1.2445	18.815	18.215	19.46	-0.11739					108	43	3	0	0	0	0.19083	1	2088	2088		24.991	0	1	342090	+		31821	17175	18398	18399	39158	39158					0.004480412035718473
PARPSPSSP	9	Unmodified	_PARPSPSSP_					0	0	0			REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.2350769042969	2	448.235242	894.45593	-0.0066323	-2.9728E-06	-0.32404	-0.00014525	-0.33067	-0.00014822	448.235072935805	18.932	1.2445	18.815	18.215	19.46	-0.11739					108	43	3	0	0	0	0.20881	1	2043	2043		27.629	0	1	342090	+		31822	17175	18398	18399	39159	39159					0.004480412035718473
PARPSPSSP	9	Unmodified	_PARPSPSSP_					0	0	0			REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.2349548339844	2	448.235242	894.45593	-0.04863	-2.1797E-05	-0.33463	-0.00014999	-0.38326	-0.00017179	448.23505470528215	18.82	1.3692	18.762	18.199	19.568	-0.058174					112	47	4	0	0	0	0.14786	1	2070	2070		31.268	0	1	335610	+		31823	17175	18398	18399	39160	39160					0.004480412035718473
PARPSPSSP	9	Unmodified	_PARPSPSSP_					0	0	0			REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.23480224609375	2	448.235242	894.45593	-0.04863	-2.1797E-05	-0.33463	-0.00014999	-0.38326	-0.00017179	448.23505470528215	18.82	1.3692	18.762	18.199	19.568	-0.058174					112	47	4	0	0	0	0.25123	1	2020	2020		12.241	0	1	335610	+		31824	17175	18398	18399	39161	39161					0.004480412035718473
PARQWYLL	8	Unmodified	_PARQWYLL_					0	0	0		ENST00000465348.5_1_6:31610527-31611963:-|nuORF	ENST00000465348.5_1_6:31610527-31611963:-|nuORF	ENST00000465348.5_1_6:31610527-31611963:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.79248046875	2	523.792727	1045.5709	0.27551	0.00014431	-1.1398	-0.00059701	-0.86427	-0.0004527	523.7922474460473	40.955	0.62264	41.051	40.748	41.37	0.096626					62	22	3	0	0	0	0.33993	1	8780	8780		16.942	0	1	453460			31825	10795	18399	18400	39162	39162					0.049937704053718335
PARRGPGRPR	10	Unmodified	_PARRGPGRPR_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8033447265625	2	560.333947	1118.65334	0.20698	0.00011598	3.2031	0.0017948	3.4101	0.0019108	560.3360834063645	23.166	0.43374	23.121	22.925	23.358	-0.044867					26	15	2	0	0	0	0.31926	1	3428	3428		5.7319	0	1	108820			31826	8675	18400	18401	39163	39163					0.09876105256898882
PARRGPGRPR	10	Unmodified	_PARRGPGRPR_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.333947	1118.65334	0.052629	2.949E-05	2.8692	0.0016077	2.9218	0.0016372	560.3359214700217	23.044	0.43307	23.044	22.791	23.224	0	-0.021081	-5.4483E-05	NaN	9.3831	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97367			31827	8675	18400	18401							0.09876105256898882
PARRGPGRPR	10	Unmodified	_PARRGPGRPR_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.333947	1118.65334	0.15108	8.4656E-05	2.7158	0.0015217	2.8669	0.0016064	560.3357822531241	23.118	0.38927	23.031	22.853	23.242	-0.087608	-0.034362	-0.00022639	NaN	9.3831	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126670			31828	8675	18400	18401							0.09876105256898882
PARRGTPLS	9	Unmodified	_PARRGTPLS_					0	0	0			REV__ENST00000426250.3_1_12:72665645-72666709:-|nuORF	REV__ENST00000426250.3_1_12:72665645-72666709:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.77777099609375	2	477.777608	953.540663	0.53524	0.00025573	-0.048177	-2.3018E-05	0.48706	0.00023271	477.77753967250055	20.233	2.3147	20.18	19.256	21.571	-0.052912					199	82	4	0	0	0	0.079752	1	2584	2584		41.84	5.7126	1	5123600	+		31829	20899	18401	18402	39164	39164					0.06203411740193587
PARRKWKE	8	Unmodified	_PARRKWKE_					0	0	0		nc|ENSG00000105963|O75689-2|ADAP1	nc|ENSG00000105963|O75689-2|ADAP1	nc|ENSG00000105963|O75689-2|ADAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.770751953125	2	535.814525	1069.6145	0.77725	0.00041646	1.628	0.00087229	2.4052	0.0012887	535.8153490271269	47.3	0.35542	47.3	47.112	47.468	0					18	12	2	0	0	0	0.34131	1	10727	10727		12.532	8.5872	1	167420			31830	12637	18402	18403	39165	39165					0.08247379902491048
PARRKWKE	8	Unmodified	_PARRKWKE_					0	0	0		nc|ENSG00000105963|O75689-2|ADAP1	nc|ENSG00000105963|O75689-2|ADAP1	nc|ENSG00000105963|O75689-2|ADAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7705688476562	2	535.814525	1069.6145	1.1522	0.00061735	0.85317	0.00045714	2.0053	0.0010745	535.8149650152541	47.184	0.37801	47.238	47.064	47.442	0.054371					18	13	2	0	0	0	0.34131	1	10713	10713		12.532	8.2023	1	280220			31831	12637	18402	18403	39166	39166					0.08247379902491048
PARRPPSPRR	10	Unmodified	_PARRPPSPRR_					0	0	0		ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8113403320312	2	595.35488	1188.69521	0.12918	7.6911E-05	-1.173	-0.00069836	-1.0438	-0.00062145	595.3543684233716	13.437	0.16679	13.337	13.249	13.416	-0.09929					13	5	3	0	0	0	0.31847	1	440	440		6.7232	0	1	48510			31832	3418	18403	18404	39167	39167					0.10840660945382297
PARRPPSPRR	10	Unmodified	_PARRPPSPRR_					0	0	0		ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	ENSG00000129250|ENST00000320785|KIF1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8114013671875	2	595.35488	1188.69521	0.021383	1.273E-05	-0.4436	-0.0002641	-0.42222	-0.00025137	595.3547773516955	13.431	0.19206	13.363	13.275	13.468	-0.067495					12	6	3	0	0	0	0.32033	1	446	446		3.5965	0	1	36491			31833	3418	18403	18404	39168	39168					0.10840660945382297
PARRQPLL	8	Unmodified	_PARRQPLL_					0	0	0			REV__ENST00000289316.2_1_6:26158401-26158455:+|nuORF	REV__ENST00000289316.2_1_6:26158401-26158455:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7982177734375	2	475.798343	949.582134	0.089687	4.2673E-05	-0.18095	-8.6094E-05	-0.091259	-4.3421E-05	475.79815149928953	26.183	0.73299	26.144	25.931	26.664	-0.038671					52	25	3	0	0	0	0.28861	1	4306	4306		32.117	1.8922	1	383420	+		31834	19745	18404	18405	39169	39169					0.10532592499521343
PARRQPLL	8	Unmodified	_PARRQPLL_					0	0	0			REV__ENST00000289316.2_1_6:26158401-26158455:+|nuORF	REV__ENST00000289316.2_1_6:26158401-26158455:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7984619140625	2	475.798343	949.582134	0.26005	0.00012373	-1.219	-0.00057999	-0.95893	-0.00045626	475.7980710464559	26.23	0.61489	26.208	25.97	26.584	-0.022236					78	21	5	0	0	0	0.39956	1	4261	4261		19.439	0	1	394910	+		31835	19745	18404	18405	39170	39170					0.10532592499521343
PARVVAVL	8	Unmodified	_PARVVAVL_					0	0	0		ENSG00000162975|ENST00000295082|KCNF1	ENSG00000162975|ENST00000295082|KCNF1	ENSG00000162975|ENST00000295082|KCNF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2394104003906	2	412.771263	823.527973	0.078104	3.2239E-05	-0.082988	-3.4255E-05	-0.0048842	-2.0161E-06	412.7711679934905	48.897	0.55829	48.929	48.71	49.268	0.032043					31	19	2	0	0	0	0.32778	1	11244	11244		14.582	0	1	584620			31836	5636	18405	18406	39171	39171					0.1091500034793853
PARVVAVL	8	Unmodified	_PARVVAVL_					0	0	0		ENSG00000162975|ENST00000295082|KCNF1	ENSG00000162975|ENST00000295082|KCNF1	ENSG00000162975|ENST00000295082|KCNF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	412.771263	823.527973	0.29523	0.00012186	-0.010039	-4.1437E-06	0.2852	0.00011772	412.7710967444505	48.886	0.62521	48.931	48.743	49.368	0.044891	-0.0019159	5.6406E-06	NaN	14.582	31	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614240			31837	5636	18405	18406							0.1091500034793853
PARWHRGRLS	10	Unmodified	_PARWHRGRLS_					0	0	0		nc|nan|Q8N9P6|C9orf163	nc|nan|Q8N9P6|C9orf163	nc|nan|Q8N9P6|C9orf163	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	617.7672729492188	2	618.347055	1234.67956	-0.018531	-1.1459E-05	-0.75518	-0.00046696	-0.77371	-0.00047842	618.3465417585892	27.221	0.76455	27.2	26.763	27.528	-0.021412					57	26	3	0	0	0	0.32082	1	4615	4615		1.3295	1.3295	1	156780			31838	13029	18406	18407	39172	39172					0.07160374428372052
PARWHRGRLS	10	Unmodified	_PARWHRGRLS_					0	0	0		nc|nan|Q8N9P6|C9orf163	nc|nan|Q8N9P6|C9orf163	nc|nan|Q8N9P6|C9orf163	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.3467407226562	2	618.347055	1234.67956	0.12839	7.9388E-05	-0.80718	-0.00049912	-0.67879	-0.00041973	618.3464817727621	27.244	0.66593	27.232	26.772	27.438	-0.01156					50	23	3	0	0	0	0.38745	1	4640	4640		3.2813	0	1	149200			31839	13029	18406	18407	39173	39173					0.07160374428372052
PASFHPAL	8	Unmodified	_PASFHPAL_					0	0	0		ENST00000522060.1_1_8:144090549-144099792:-|nuORF;ENST00000518831.1_1_8:144098425-144099792:-|nuORF;ENST00000517833.1_1_8:144063675-144099792:-|nuORF	ENST00000522060.1_1_8:144090549-144099792:-|nuORF	ENST00000522060.1_1_8:144090549-144099792:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.2227783203125	2	420.224146	838.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.961	1	60.056	59.556	60.556	0.095093								0	0	0	0.35014	1	14627	14627		14.582	5.2343	1				31840	11441	18407	18408	39174	39174					0.00805861525805085
PASFHPAL	8	Unmodified	_PASFHPAL_					0	0	0		ENST00000522060.1_1_8:144090549-144099792:-|nuORF;ENST00000518831.1_1_8:144098425-144099792:-|nuORF;ENST00000517833.1_1_8:144063675-144099792:-|nuORF	ENST00000522060.1_1_8:144090549-144099792:-|nuORF	ENST00000522060.1_1_8:144090549-144099792:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.22259521484375	2	420.224146	838.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.164	1	60.152	59.652	60.652	-0.011486								0	0	0	0.33625	1	14689	14689		20.871	5.103	1				31841	11441	18407	18408	39175	39175					0.00805861525805085
PASIGQPR	8	Unmodified	_PASIGQPR_					0	0	0		nc|ENSG00000163002|Q8NFH5-3|NUP35;nc|ENSG00000163002|Q8NFH5-2|NUP35;ENSG00000163002|ENST00000295119|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2385559082031	2	413.232502	824.450451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.568	1	30.595	30.095	31.095	0.027157								0	0	0	0.36961	1	5605	5605		5.7604	0	1				31842	5640	18408	18409	39176	39176					0.031203624117551954
PASKLKRL	8	Unmodified	_PASKLKRL_					0	0	0			REV__ENSG00000138175|ENST00000260746|ARL3	REV__ENSG00000138175|ENST00000260746|ARL3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7933349609375	2	456.803094	911.591636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.755	1	36.755	36.255	37.255	0								0	0	0	0.3683	1	7500	7500		6.3541	0	1		+		31843	15908	18409	18410	39177	39177					0.1323036078503037
PASKRPPL	8	Unmodified	_PASKRPPL_					0	0	0		ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.23760986328125	2	433.266345	864.518136	0.027652	1.1981E-05	-1.6115	-0.00069821	-1.5839	-0.00068623	433.2654995823851	21.087	0.57619	21.087	20.825	21.401	0					24	19	2	0	0	0	0.31088	1	2701	2701		28.487	3.813	1	53511			31844	7080	18410	18411	39178	39178					0.08045812342561476
PASKRPPL	8	Unmodified	_PASKRPPL_					0	0	0		ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.9029846191406	2	433.266345	864.518136	0.19721	8.5446E-05	-1.5628	-0.0006771	-1.3656	-0.00059166	433.26558334171756	21.168	0.48884	21.058	20.894	21.383	-0.11003					21	16	2	0	0	0	0.34167	1	2803	2803		7.2892	1.5288	1	41692			31845	7080	18410	18411	39179	39179					0.08045812342561476
PASKRPPL	8	Unmodified	_PASKRPPL_					0	0	0		ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.90313720703125	2	433.266345	864.518136	0.04501	1.9501E-05	-1.1313	-0.00049014	-1.0863	-0.00047064	433.2657161142985	21.109	0.67977	21.056	20.809	21.488	-0.052912					32	23	2	0	0	0	0.32886	1	2725	2725		21.747	3.6117	1	52506			31846	7080	18410	18411	39180	39180					0.08045812342561476
PASPEKVL	8	Unmodified	_PASPEKVL_					0	0	0		ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.7450866699219	2	420.744911	839.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.407	1	55.478	54.978	55.978	0.070885								0	0	0	0.22487	1	13228	13228		40.449	0	1				31847	804	18411	18412	39181	39181					0.04910997494471303
PASPKNLL	8	Unmodified	_PASPKNLL_					0	0	0			REV__SLITRK4|p.I624*|1|0.83|ENSG00000179542|chrX:143629239-143629242|TACT/-|frameshift_variant	REV__SLITRK4|p.I624*|1|0.83|ENSG00000179542|chrX:143629239-143629242|TACT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.2528076171875	2	420.252903	838.491253	-0.055935	-2.3507E-05	-0.093874	-3.9451E-05	-0.14981	-6.2958E-05	420.2527334527629	57.876	1.1343	57.876	57.578	58.712	0					86	39	3	0	0	0	0.35375	1	13956	13956		24.674	0	1	2382400	+		31848	18081	18412	18413	39182	39182					0.06554703731376321
PASRRREALTK	11	Unmodified	_PASRRREALTK_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.8800659179688	2	642.878385	1283.74222	1.0537	0.00067743	2.3493	0.0015103	3.403	0.0021877	642.8793021798949	50.531	0.52793	50.576	50.318	50.846	0.044891					34	18	3	0	0	0	0.39284	1	11735	11735		12.175	2.1008	1	682510	+		31849	15880	18413	18414	39183	39183					0.11169475705855803
PASRRREALTK	11	Unmodified	_PASRRREALTK_					0	0	0			REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.8800659179688	2	642.878385	1283.74222	1.1059	0.00071093	2.2235	0.0014295	3.3294	0.0021404	642.879289991625	50.542	0.51083	50.562	50.335	50.846	0.020691					33	18	3	0	0	0	0.39284	1	11734	11734		12.175	1.3508	1	679750	+		31850	15880	18413	18414	39184	39184					0.11169475705855803
PASSRHSPPC	10	Unmodified	_PASSRHSPPC_					0	0	0			REV__ENST00000541020.1_1_16:57077474-57077672:+|nuORF	REV__ENST00000541020.1_1_16:57077474-57077672:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7699584960938	2	519.742908	1037.47126	0.11865	6.1668E-05	1.3775	0.00071593	1.4961	0.0007776	519.7435157182275	15.107	0.27653	15.107	14.981	15.257	0					12	9	2	0	0	0	0.31691	1	955	955		9.3831	1.473	1	37785	+		31851	22123	18414	18415	39185	39185					-0.04597415270882266
PATGQNGPRGL	11	Unmodified	_PATGQNGPRGL_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.283203125	2	534.283254	1066.55196	0.091736	4.9013E-05	0.31892	0.00017039	0.41066	0.00021941	534.2828701897614	99.117	1.7874	99.117	98.405	100.19	0					553	222	3	0	0	0	0.44828	1	26563	26563		4.897	0.56777	1	846820			31852	4291	18415	18416	39186	39186					0.021341890436588073
PATKTNRDE	9	Unmodified	_PATKTNRDE_					0	0	0			REV__ENST00000503492.5_1_5:141233609-141235795:-|nuORF	REV__ENST00000503492.5_1_5:141233609-141235795:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2582397460938	2	516.259445	1030.50434	-0.11801	-6.0925E-05	-0.89134	-0.00046017	-1.0094	-0.00052109	516.2585804484212	14.119	0.40438	14.053	13.747	14.152	-0.066068					24	13	3	0	0	0	0.34923	1	651	651		1.4819	0	1	157940	+		31853	16746	18416	18417	39187	39187					-0.009695099472082802
PATLLAKTSL	10	Unmodified	_PATLLAKTSL_					0	0	0		ENST00000540714.1_1_9:5919686-5933837:-|nuORF;ENSG00000183354|ENST00000399933|KIAA2026	ENST00000540714.1_1_9:5919686-5933837:-|nuORF	ENST00000540714.1_1_9:5919686-5933837:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7983703613281	2	507.813325	1013.6121	0.27807	0.00014121	-0.1031	-5.2355E-05	0.17497	8.8855E-05	507.8131978686655	52.09	1.015	52.09	51.809	52.824	0					88	36	5	0	0	0	0.36002	1	12258	12258		10.824	0.75	1	1079400			31854	7363	18417	18418	39188	39188					0.10583486654184071
PATPSTEALAP	11	Unmodified	_PATPSTEALAP_					0	0	0			REV__nc|ENSG00000116809|Q13105-3|ZBTB17	REV__nc|ENSG00000116809|Q13105-3|ZBTB17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.283447265625	2	527.774396	1053.53424	0.31139	0.00016434	-3.7627	-0.0019859	-3.4513	-0.0018215	527.7723006222478	15.901	0.82101	15.901	15.528	16.349	0					46	28	2	0	0	0	0.32996	1	1273	1273		8.1555	2.3951	1	119100	+		31855	14941	18418	18419	39189	39189					0.00961428998152769
PATSSRPSL	9	Unmodified	_PATSSRPSL_					0	0	0			REV__ENST00000485450.5_1_3:49315728-49349110:-|nuORF	REV__ENST00000485450.5_1_3:49315728-49349110:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.23748779296875	2	458.248349	914.482145	-0.10365	-4.7499E-05	-0.36856	-0.00016889	-0.47221	-0.00021639	458.24843188365736	28.319	0.57392	28.315	28.055	28.629	-0.0042572					49	20	4	0	0	0	0.29176	1	5000	5000		10.074	0	1	191300	+		31856	21543	18419	18420	39190	39190					0.021483103750597365
PATSSRPSL	9	Unmodified	_PATSSRPSL_					0	0	0			REV__ENST00000485450.5_1_3:49315728-49349110:-|nuORF	REV__ENST00000485450.5_1_3:49315728-49349110:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.19451904296875	2	458.248349	914.482145	-0.15289	-7.0062E-05	0.011083	5.0786E-06	-0.14181	-6.4984E-05	458.2483874889026	28.327	0.55737	28.328	28.078	28.635	0.0004673					29	19	2	0	0	0	0.2322	1	4890	4890		14.838	0	1	179090	+		31857	21543	18419	18420	39191	39191					0.021483103750597365
PAVIVLHPLT	10	Unmodified	_PAVIVLHPLT_					0	0	0		ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7713012695312	2	530.331685	1058.64882	0.52016	0.00027586	-0.45709	-0.00024241	0.063074	3.345E-05	530.33157459123	76.688	0.45341	76.688	76.448	76.902	0					23	16	2	0	0	0	0.31847	1	19728	19728		6.7232	6.7232	1	104150			31858	4932	18420	18421	39192	39192					0.12183783270734239
PAVLKNLAE	9	Unmodified	_PAVLKNLAE_					0	0	0		ENSG00000175267|ENST00000389398|VWA3A	ENSG00000175267|ENST00000389398|VWA3A	ENSG00000175267|ENST00000389398|VWA3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.8211669921875	2	477.784567	953.554582	0.089842	4.2925E-05	0.28903	0.00013809	0.37887	0.00018102	477.78457807554287	29.273	0.88817	29.286	28.619	29.507	0.013475					44	31	2	0	0	0	0.24311	1	5120	5120		16.942	1.0951	1	112740			31859	6854	18421	18422	39193	39193					0.07594644448602139
PAVRAARR	8	Unmodified	_PAVRAARR_					0	0	0			REV__nc|ENSG00000168502|Q9Y4B5|MTCL1	REV__nc|ENSG00000168502|Q9Y4B5|MTCL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7510681152344	2	448.780485	895.546417	0.38979	0.00017493	0.86818	0.00038962	1.258	0.00056455	448.78077647912926	21.328	0.93703	21.218	20.525	21.462	-0.10999					70	32	3	0	0	0	0.34185	1	2662	2662		10.183	3.8293	1	294260	+		31860	17465	18422	18423	39194	39194					0.09446555042507043
PAVRAARR	8	Unmodified	_PAVRAARR_					0	0	0			REV__nc|ENSG00000168502|Q9Y4B5|MTCL1	REV__nc|ENSG00000168502|Q9Y4B5|MTCL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	448.780485	895.546417	0.34121	0.00015313	0.85492	0.00038367	1.1961	0.0005368	448.78074133066366	21.242	0.81942	21.19	20.638	21.457	-0.05291	0.013865	3.2516E-05	NaN	10.183	77	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286720	+		31861	17465	18422	18423							0.09446555042507043
PAVSFLLP	8	Unmodified	_PAVSFLLP_					0	0	0			REV__ENST00000468376.2_1_20:45867286-45947776:-|nuORF	REV__ENST00000468376.2_1_20:45867286-45947776:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2432556152344	2	422.252372	842.49019	-0.35855	-0.0001514	1.2007	0.00050701	0.84218	0.00035561	422.2531466531068	13.507	0.27347	13.439	13.275	13.549	-0.067496					14	9	3	0	0	0	0.34434	1	404	404		0.79363	0	1	14290	+		31862	21323	18423	18424	39195	39195					0.06264489362479253
PAWLWSEHYL	10	Unmodified	_PAWLWSEHYL_					0	0	0			REV__ENST00000558501.5_1_19:8275630-8321979:+|nuORF	REV__ENST00000558501.5_1_19:8275630-8321979:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8829345703125	3	434.548629	1300.62406	-0.21765	-9.458E-05	-0.16299	-7.0827E-05	-0.38064	-0.00016541	434.8823423702045	22.306	1.6865	22.257	21.207	22.894	-0.049377					82	59	2	0	0	0	0.38284	1	3079	3079		6.6304	1.9145	1	279720	+		31863	14047	18424	18425	39196	39196					-0.014228966026166745
PAWLWSEHYL	10	Unmodified	_PAWLWSEHYL_					0	0	0			REV__ENST00000558501.5_1_19:8275630-8321979:+|nuORF	REV__ENST00000558501.5_1_19:8275630-8321979:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	434.548629	1300.62406	-0.090821	-3.9466E-05	-0.0096665	-4.2006E-06	-0.10049	-4.3667E-05	434.8824810297168	22.289	0.72812	22.189	21.917	22.645	-0.10034	-0.043238	8.2488E-05	NaN	6.6304	68	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308090	+		31864	14047	18424	18425							-0.014228966026166745
PAWMARLSL	9	Unmodified	_PAWMARLSL_					0	0	0		ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7788696289062	2	522.786587	1043.55862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.561	1	19.561	19.061	20.061	0								0	0	0	0.24264	1	2271	2271		8.7454	1.4562	1				31865	2511	18425	18426	39197	39197					0.03858410670682133
PAWMARLSL	9	Unmodified	_PAWMARLSL_					0	0	0		ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.77880859375	2	522.786587	1043.55862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.661	1	19.605	19.105	20.105	-0.055693								0	0	0	0.22666	1	2300	2300		13.906	1.3745	1				31866	2511	18425	18426	39198	39198					0.03858410670682133
PAWMKPSEEW	10	Unmodified	_PAWMKPSEEW_					0	0	0		ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|3.526883271130616|0.1449238599365492|4.61|533.0|2|1|sense;ENST00000457107.5_1_6:29760033-29761240:+|nuORF	ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|3.526883271130616|0.1449238599365492|4.61|533.0|2|1|sense	ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|3.526883271130616|0.1449238599365492|4.61|533.0|2|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5576477050781	3	420.862108	1259.56449	-0.37163	-0.00015641	-0.030593	-1.2876E-05	-0.40223	-0.00016928	420.8622362618214	13.635	0.30984	13.635	13.484	13.794	0					18	10	3	0	0	0	0.32122	1	514	514		2.086	0	1	34202			31867	10702	18426	18427	39199	39199					-0.05490535608328173
PAWMKPSEEW	10	Unmodified	_PAWMKPSEEW_					0	0	0		ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|3.526883271130616|0.1449238599365492|4.61|533.0|2|1|sense;ENST00000457107.5_1_6:29760033-29761240:+|nuORF	ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|3.526883271130616|0.1449238599365492|4.61|533.0|2|1|sense	ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|3.526883271130616|0.1449238599365492|4.61|533.0|2|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.5574951171875	3	420.862108	1259.56449	-0.33148	-0.00013951	0.34054	0.00014332	0.0090648	3.815E-06	420.8622484120389	13.735	0.32946	13.63	13.487	13.816	-0.10466					14	11	2	0	0	0	0.32122	1	540	540		2.086	0.63089	1	38152			31868	10702	18426	18427	39200	39200					-0.05490535608328173
PAWTAPAR	8	Unmodified	_PAWTAPAR_					0	0	0			REV__ENST00000342665.4_2_20:308281-308551:+|nuORF	REV__ENST00000342665.4_2_20:308281-308551:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8829345703125	2	435.235045	868.455536	-0.19761	-8.6009E-05	0.623	0.00027115	0.42539	0.00018514	435.2355734329628	22.825	1.1245	22.78	22.042	23.167	-0.044867					68	39	3	0	0	0	0.34319	1	3079	3079		5.7604	0	1	208460	+		31869	20126	18427	18428	39201	39201					0.016046662743633533
PAYLFKLLH	9	Unmodified	_PAYLFKLLH_					0	0	0		nc|ENSG00000168447|P51168-2|SCNN1B	nc|ENSG00000168447|P51168-2|SCNN1B	nc|ENSG00000168447|P51168-2|SCNN1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.26611328125	2	551.326402	1100.63825	0.30754	0.00016955	-0.53805	-0.00029664	-0.23051	-0.00012709	551.8276172867761	28.701	0.26898	28.701	28.548	28.817	0					11	8	2	0	0	0	0.25811	1	5057	5057		5.2307	2.9279	1	104830			31870	12830	18428	18429	39202	39202					0.09195800616316774
PAYLPHRLGLF	11	Unmodified	_PAYLPHRLGLF_					0	0	0		ENST00000591831.5_1_17:73841979-73842808:-|nuORF;ENST00000254806.7_2_17:73842232-73842808:-|nuORF	ENST00000591831.5_1_17:73841979-73842808:-|nuORF	ENST00000591831.5_1_17:73841979-73842808:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.5800476074219	3	428.580152	1282.71863	-0.018184	-7.7933E-06	-0.13741	-5.8893E-05	-0.1556	-6.6686E-05	428.580049715489	57.048	1.5156	57.029	56.7	58.216	-0.019081					165	55	4	0	0	0	0.37965	1	13794	13794		7.4771	0.43998	1	3683700			31871	8919	18429	18430	39203	39203					0.08857661939350692
PCCGVTKSNKR	11	Unmodified	_PCCGVTKSNKR_					0	0	0			REV__ENST00000373580.7_1_9:127575811-127576135:+|nuORF	REV__ENST00000373580.7_1_9:127575811-127576135:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.801513671875	2	596.7999	1191.58525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.381	1	20.328	19.828	20.828	-0.05291								0	0	0	0.37501	1	2519	2519		2.7352	0.23671	1		+		31872	20442	18430	18431	39204	39204					-0.0028826850032146467
PCEPIFVWDAG	11	Unmodified	_PCEPIFVWDAG_					0	0	0			REV__ENST00000546964.5_1_12:48513149-48528944:+|nuORF	REV__ENST00000546964.5_1_12:48513149-48528944:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	617.3057861328125	2	617.284074	1232.5536	0.18441	0.00011383	-0.52578	-0.00032455	-0.34137	-0.00021072	617.2835480087816	69.959	0.51457	69.937	69.673	70.188	-0.022087					27	18	2	0	0	0	0.33175	1	17721	17721		4.897	0.95262	1	93829	+		31873	16584	18431	18432	39205	39205					-0.05337937982585572
PCHQKLPEM	9	Carbamidomethyl (C),Oxidation (M)	_PC(Carbamidomethyl (C))HQKLPEM(Oxidation (M))_	PC(1)HQKLPEM	PCHQKLPEM(1)	PC(46)HQKLPEM	PCHQKLPEM(46)	0	1	1		ENST00000395253.3_1_9:99884091-99884715:+|nuORF	ENST00000395253.3_1_9:99884091-99884715:+|nuORF	ENST00000395253.3_1_9:99884091-99884715:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2818603515625	2	578.267901	1154.52125	0.46741	0.00027029	1.9433	0.0011237	2.4107	0.001394	578.2690411421613	77.243	0.92079	77.299	76.758	77.679	0.055412					44	32	2	0	0	0	0.068501	1	19885	19885		46.021	25.567	1	174720			31874	10086	18432	18433	39206	39206	10	938			-0.04983048657231848
PCIDEYKKG	9	Unmodified	_PCIDEYKKG_					0	0	0			REV__ENSG00000163577|ENST00000295822|EIF5A2	REV__ENSG00000163577|ENST00000295822|EIF5A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3613891601562	2	526.757692	1051.50083	0.35426	0.00018661	-1.269	-0.00066847	-0.91477	-0.00048186	526.7579120149048	29.254	0.33243	29.268	29.058	29.39	0.013474					14	11	2	0	0	0	0.25988	1	5201	5201		3.9444	0.3479	1	62550	+		31875	15575	18433	18434	39207	39207					-0.022858960454186672
PCLFESQLDA	10	Unmodified	_PCLFESQLDA_					0	0	0			REV__nc|ENSG00000225362|P0C5K7|CT62	REV__nc|ENSG00000225362|P0C5K7|CT62	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2886352539062	2	561.760432	1121.50631	0.1961	0.00011016	2.7089	0.0015218	2.905	0.0016319	561.7621048769131	17.594	0.29035	17.534	17.414	17.704	-0.060431					14	9	2	0	0	0	0.32132	1	1649	1649		1.4819	0.28856	1	28026	+		31876	23197	18434	18435	39208	39208					-0.04958217253579278
PCLKKENS	8	Unmodified	_PCLKKENS_					0	0	0		nc|ENSG00000135298|O60242-2|ADGRB3;ENSG00000135298|ENST00000370598|ADGRB3	nc|ENSG00000135298|O60242-2|ADGRB3	nc|ENSG00000135298|O60242-2|ADGRB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.7720031738281	2	459.739302	917.464052	-0.2012	-9.2501E-05	0.16723	7.6883E-05	-0.033972	-1.5618E-05	459.739552192962	14.488	0.18107	14.384	14.308	14.489	-0.10466					7	5	2	0	0	0	0.34353	1	757	757		4.756	0	1	9396.3			31877	3858	18435	18436	39209	39209					0.0020185212869137104
PCPCKGEMMDC	11	Unmodified	_PCPCKGEMMDC_					0	0	0			REV__ENST00000513342.5_1_17:46990150-47004493:+|nuORF	REV__ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8726196289062	2	607.212565	1212.41058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.03	1	117.01	116.51	117.51	-0.022781								0	0	0	0.38206	1	30303	30303		0.26902	0.26902	1		+		31878	16842	18436	18437	39210	39210					-0.18713096023634535
PCPDWRTYTRA	11	Unmodified	_PCPDWRTYTRA_					0	0	0			REV__ENST00000500447.1_1_11:567068-567254:-|nuORF	REV__ENST00000500447.1_1_11:567068-567254:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2180480957031	3	455.883795	1364.62955	0.35788	0.00016315	0.98783	0.00045034	1.3457	0.00061349	455.8842664442519	20.387	0.70728	20.277	20.046	20.753	-0.11003					64	25	3	0	0	0	0.47915	1	2498	2498		0.84494	0.33899	1	310460	+		31879	21704	18437	18438	39211	39211					-0.03817541082457865
PCRLPPPAP	9	Unmodified	_PCRLPPPAP_					0	0	0		ENST00000602130.5_1_19:41808830-41812642:+|nuORF;ENSG00000169926|ENST00000307145|KLF13	ENST00000602130.5_1_19:41808830-41812642:+|nuORF	ENST00000602130.5_1_19:41808830-41812642:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.7353210449219	2	474.260205	946.505857	-0.016249	-7.7062E-06	2.9252	0.0013873	2.9089	0.0013796	474.26168636650965	15.543	0.2716	15.479	15.333	15.605	-0.064413					11	8	2	0	0	0	0.25879	1	1092	1092		4.756	0.42677	1	30092			31880	12262	18438	18439	39212	39212					0.030464526078503695
PCVLYRPR	8	Unmodified	_PCVLYRPR_					0	0	0			REV__ENST00000549469.1_1_2:176973927-176983694:+|nuORF	REV__ENST00000549469.1_1_2:176973927-176983694:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.8861083984375	2	502.278929	1002.54331	-0.027931	-1.4029E-05	3.8512	0.0019344	3.8232	0.0019203	502.2819770147492	13.804	0.57565	13.738	13.494	14.07	-0.066067					40	19	3	0	0	0	0.3439	1	583	583		2.8892	0.31174	1	50696	+		31881	22196	18439	18440	39213	39213					0.0421354387348174
PCYPSQEAEVY	11	Unmodified	_PCYPSQEAEVY_					0	0	0		ENST00000413366.7_1_17:64800791-64801205:+|nuORF	ENST00000413366.7_1_17:64800791-64801205:+|nuORF	ENST00000413366.7_1_17:64800791-64801205:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	643.274169921875	2	643.273903	1284.53325	0.42039	0.00027043	-1.0855	-0.00069826	-0.66509	-0.00042783	643.273230324284	65.494	0.60439	65.494	65.19	65.795	0					56	21	3	0	0	0	0.45605	1	16340	16340		3.8763	0.88109	1	460290			31882	10287	18440	18441	39214	39214					-0.0976315343305032
PCYPSQEAEVY	11	Unmodified	_PCYPSQEAEVY_					0	0	0		ENST00000413366.7_1_17:64800791-64801205:+|nuORF	ENST00000413366.7_1_17:64800791-64801205:+|nuORF	ENST00000413366.7_1_17:64800791-64801205:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	643.273903	1284.53325	0.10039	6.4579E-05	-1.1913	-0.00076633	-1.0909	-0.00070175	643.273294954147	65.417	0.64735	65.506	65.164	65.811	0.088882	0.015685	5.5247E-05	NaN	3.8763	60	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487520			31883	10287	18440	18441							-0.0976315343305032
PCYPSQEAEVY	11	Unmodified	_PCYPSQEAEVY_					0	0	0		ENST00000413366.7_1_17:64800791-64801205:+|nuORF	ENST00000413366.7_1_17:64800791-64801205:+|nuORF	ENST00000413366.7_1_17:64800791-64801205:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	643.273903	1284.53325	0.44371	0.00028543	-1.3723	-0.00088274	-0.92855	-0.00059731	643.2729751294225	65.482	0.77045	65.471	65.122	65.892	-0.01133	-0.019254	-0.00017757	NaN	3.8763	61	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	527660			31884	10287	18440	18441							-0.0976315343305032
PDAGFNGKL	9	Unmodified	_PDAGFNGKL_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7560729980469	2	459.737617	917.460681	0.012137	5.5799E-06	0.8468	0.00038931	0.85894	0.00039489	459.73798203834514	32.849	0.45333	32.849	32.749	33.202	0					25	15	2	0	0	0	0.22596	1	6350	6350		10.824	5.0635	1	115080			31885	1282	18441	18442	39215	39215					-0.0013507465366728866
PDARGRRCP	9	Unmodified	_PDARGRRCP_					0	0	0			REV__ENST00000487775.1_1_1:10459828-10460008:+|nuORF	REV__ENST00000487775.1_1_1:10459828-10460008:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2529907226562	2	514.264342	1026.51413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.448	1	27.436	26.936	27.936	-0.01156								0	0	0	0.23091	1	4657	4657		12.532	1.7076	1		+		31886	21566	18442	18443	39216	39216					0.0019339957721058454
PDASFQVVL	9	Unmodified	_PDASFQVVL_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.79083251953125	2	488.260925	974.507297	0.29892	0.00014595	-0.25339	-0.00012372	0.045533	2.2232E-05	488.2608386632536	76.073	0.40927	76.041	75.881	76.29	-0.031479					24	14	2	0	0	0	0.22674	1	19555	19555		17.113	0	1	330440			31887	415	18443	18444	39217	39217					0.019023651776365114
PDAVTEESI	9	Unmodified	_PDAVTEESI_					0	0	0			REV__ENST00000303115.7_1_5:35877606-35877663:+|nuORF	REV__ENST00000303115.7_1_5:35877606-35877663:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2558898925781	2	480.729655	959.444756	0.46321	0.00022268	-0.10627	-5.1085E-05	0.35695	0.00017159	480.72987110295423	65.817	0.34665	65.817	65.634	65.981	0					15	12	2	0	0	0	0.25066	1	16400	16400		7.2892	0	1	85858	+		31888	19836	18444	18445	39218	39218					-0.03658825681225153
PDAVTEESI	9	Unmodified	_PDAVTEESI_					0	0	0			REV__ENST00000303115.7_1_5:35877606-35877663:+|nuORF	REV__ENST00000303115.7_1_5:35877606-35877663:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	480.729655	959.444756	0.42988	0.00020666	0.54978	0.0002643	0.97966	0.00047095	480.7298594117905	65.808	0.41597	65.797	65.586	66.002	-0.011337	-0.010403	0.00038349	NaN	7.2892	16	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84621	+		31889	19836	18444	18445							-0.03658825681225153
PDCSKIGMA	9	Unmodified	_PDCSKIGMA_					0	0	0			REV__ENSG00000167658|ENST00000309311|EEF2	REV__ENSG00000167658|ENST00000309311|EEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.279541015625	2	461.212063	920.409574	0.28349	0.00013075	-0.038124	-1.7583E-05	0.24536	0.00011316	461.2119884591149	40.113	0.47791	40.212	39.949	40.427	0.099407					29	16	2	0	0	0	0.25879	1	8445	8445		4.756	1.1595	1	224580	+		31890	17401	18445	18446	39219	39219					-0.05381483014389232
PDCSKIGMA	9	Unmodified	_PDCSKIGMA_					0	0	0			REV__ENSG00000167658|ENST00000309311|EEF2	REV__ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	461.212063	920.409574	0.31102	0.00014344	-0.27826	-0.00012833	0.03276	1.5109E-05	461.2119357208903	40.148	0.45397	40.241	39.994	40.448	0.09267	-0.0069104	-0.00019923	NaN	4.756	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286890	+		31891	17401	18445	18446							-0.05381483014389232
PDDAFRDIF	9	Unmodified	_PDDAFRDIF_					0	0	0		ENST00000578523.1_1_17:61259754-61259964:+|nuORF	ENST00000578523.1_1_17:61259754-61259964:+|nuORF	ENST00000578523.1_1_17:61259754-61259964:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7449340820312	2	548.258914	1094.50327	0.72251	0.00039612	-2.4917	-0.0013661	-1.7692	-0.00096997	548.7571444750829	40.286	0.30129	40.379	40.284	40.585	0.09267					15	10	2	0	0	0	0.25417	1	8568	8568		8.5933	1.304	1	108720			31892	12062	18446	18447	39220	39220					-0.0401972431611739
PDDEQFVPDF	10	Unmodified	_PDDEQFVPDF_					0	0	0		ENST00000476890.1_1_3:185813076-185826774:-|nuORF;ENSG00000244405|ENST00000306376|ETV5;nc|ENSG00000244405|P41161-2|ETV5	ENST00000476890.1_1_3:185813076-185826774:-|nuORF	ENST00000476890.1_1_3:185813076-185826774:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.7579956054688	2	604.758943	1207.50333	0.73855	0.00044665	-1.3189	-0.00079761	-0.58034	-0.00035096	604.757810298759	40.068	0.56549	40.161	39.803	40.369	0.092674					44	19	4	0	0	0	0.19885	1	8479	8479		32.786	5.1569	1	583880			31893	8569	18447	18448	39221	39221					-0.09211769106741485
PDDEQFVPDF	10	Unmodified	_PDDEQFVPDF_					0	0	0		ENST00000476890.1_1_3:185813076-185826774:-|nuORF;ENSG00000244405|ENST00000306376|ETV5;nc|ENSG00000244405|P41161-2|ETV5	ENST00000476890.1_1_3:185813076-185826774:-|nuORF	ENST00000476890.1_1_3:185813076-185826774:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.7592163085938	2	604.758943	1207.50333	0.4203	0.00025418	-0.87019	-0.00052625	-0.44988	-0.00027207	604.7582033268424	39.989	0.58058	40.089	39.817	40.397	0.099403					47	20	3	0	0	0	0.18562	1	8483	8483		34.402	0	1	519990			31894	8569	18447	18448	39222	39222					-0.09211769106741485
PDDLQVHR	8	Unmodified	_PDDLQVHR_					0	0	0			REV__ENST00000228682.6_1_12:57853947-57857506:+|nuORF	REV__ENST00000228682.6_1_12:57853947-57857506:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2771301269531	2	490.251423	978.488293	0.19099	9.3631E-05	0.39464	0.00019347	0.58563	0.0002871	490.2521551382021	34.002	0.58134	34.068	33.657	34.239	0.066704					26	20	2	0	0	0	0.34353	1	6573	6573		4.756	0	1	129670	+		31895	19451	18448	18449	39223	39223					-0.001811713934330328
PDEDDSSY	8	Unmodified	_PDEDDSSY_					0	0	0			REV__ENSG00000266074|ENST00000675386|BAHCC1	REV__ENSG00000266074|ENST00000675386|BAHCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7765197753906	2	464.164345	926.314136	-0.071445	-3.3162E-05	-2.674	-0.0012412	-2.7454	-0.0012743	464.1632516786156	24.719	0.25183	24.687	24.545	24.796	-0.031408					10	8	2	0	0	0	0.34434	1	3865	3865		0.79363	0	1	30709	+		31896	19299	18449	18450	39224	39224					-0.15196841400074845
PDEDDSSY	8	Unmodified	_PDEDDSSY_					0	0	0			REV__ENSG00000266074|ENST00000675386|BAHCC1	REV__ENSG00000266074|ENST00000675386|BAHCC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	464.164345	926.314136	-0.031772	-1.4748E-05	-2.7798	-0.0012903	-2.8115	-0.001305	464.16291981965	24.758	0.20773	24.702	24.572	24.78	-0.055931	0.0076483	-6.6565E-05	NaN	0.79363	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27012	+		31897	19299	18449	18450							-0.15196841400074845
PDEFLDAICSN	11	Unmodified	_PDEFLDAICSN_					0	0	0		nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC	nc|ENSG00000290691|A6NGW2|STRCP1	nc|ENSG00000290691|A6NGW2|STRCP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.8546447753906	3	408.513144	1222.5176	-0.32076	-0.00013103	-1.4079	-0.00057516	-1.7287	-0.00070619	408.5127882862269	27.933	0.29178	27.928	27.763	28.055	-0.0042572					14	9	2	0	0	0	0.33037	1	4764	4764		6.2344	2.9147	1	97471			31898	8554	18450	18451	39225	39225					-0.08475439950143482
PDEKRPSV	8	Unmodified	_PDEKRPSV_					0	0	0			REV__nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	REV__nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.5694274902344	2	464.248349	926.482145	-0.31915	-0.00014817	0.23383	0.00010855	-0.085326	-3.9613E-05	464.24835401315204	27.941	0.54134	27.937	27.737	28.278	-0.0042572					27	18	2	0	0	0	0.34272	1	4780	4780		7.9102	0.62092	1	169740	+		31899	17507	18451	18452	39226	39226					0.015963103750436858
PDEPDVMEE	9	Unmodified	_PDEPDVMEE_					0	0	0			REV__ENSG00000159110|ENST00000342136|IFNAR2	REV__ENSG00000159110|ENST00000342136|IFNAR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7761840820312	2	530.710605	1059.40666	0.092422	4.9049E-05	-1.47	-0.00078016	-1.3776	-0.00073111	530.7098240057518	14.531	0.20767	14.426	14.308	14.516	-0.10466					10	6	2	0	0	0	0.26168	1	753	753		1.8442	1.0506	1	25603	+		31900	16835	18452	18453	39227	39227					-0.1206707965818623
PDFKEYCQK	9	Unmodified	_PDFKEYCQK_					0	0	0		SERPINB8|p.T180Kfs*17|1|0.34|ENSG00000166401|chr18:63983693-63983693|C/-|frameshift_variant;nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8	SERPINB8|p.T180Kfs*17|1|0.34|ENSG00000166401|chr18:63983693-63983693|C/-|frameshift_variant	SERPINB8|p.T180Kfs*17|1|0.34|ENSG00000166401|chr18:63983693-63983693|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.268310546875	2	579.268424	1156.5223	0.18129	0.00010502	-2.5094	-0.0014536	-2.3281	-0.0013486	579.2673120605989	17.863	0.36449	17.863	17.66	18.024	0					17	11	2	0	0	0	0.25112	1	1763	1763		16.149	3.1066	1	45746			31901	6072	18453	18454	39228	39228					-0.04970511016699675
PDFKEYCQK	9	Unmodified	_PDFKEYCQK_					0	0	0		SERPINB8|p.T180Kfs*17|1|0.34|ENSG00000166401|chr18:63983693-63983693|C/-|frameshift_variant;nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8	SERPINB8|p.T180Kfs*17|1|0.34|ENSG00000166401|chr18:63983693-63983693|C/-|frameshift_variant	SERPINB8|p.T180Kfs*17|1|0.34|ENSG00000166401|chr18:63983693-63983693|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.767578125	2	579.268424	1156.5223	0.12093	7.0053E-05	-2.3268	-0.0013478	-2.2059	-0.0012778	579.2671664995614	18.073	0.339	17.956	17.726	18.065	-0.11739					17	11	2	0	0	0	0.31763	1	1827	1827		6.2058	0	1	39407			31902	6072	18453	18454	39229	39229					-0.04970511016699675
PDFKEYCQK	9	Unmodified	_PDFKEYCQK_					0	0	0		SERPINB8|p.T180Kfs*17|1|0.34|ENSG00000166401|chr18:63983693-63983693|C/-|frameshift_variant;nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8	SERPINB8|p.T180Kfs*17|1|0.34|ENSG00000166401|chr18:63983693-63983693|C/-|frameshift_variant	SERPINB8|p.T180Kfs*17|1|0.34|ENSG00000166401|chr18:63983693-63983693|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.2681274414062	2	579.268424	1156.5223	0.084373	4.8874E-05	-1.7965	-0.0010407	-1.7121	-0.00099178	579.2678177316969	18.059	0.2674	18.001	17.819	18.087	-0.058174					16	9	2	0	0	0	0.29176	1	1819	1819		10.074	0	1	45226			31903	6072	18453	18454	39230	39230					-0.04970511016699675
PDFSYFRTF	9	Unmodified	_PDFSYFRTF_					0	0	0		ENSG00000205929|ENST00000479548|C21orf62	ENSG00000205929|ENST00000479548|C21orf62	ENSG00000205929|ENST00000479548|C21orf62	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.2770385742188	2	590.277106	1178.53966	0.45244	0.00026706	-0.39176	-0.00023125	0.060675	3.5815E-05	590.2769307032042	17.011	0.31546	16.95	16.836	17.152	-0.060429					15	11	2	0	0	0	0.34923	1	1535	1535		1.4819	0.8804	1	22136			31904	8309	18454	18455	39231	39231					-0.042468474193810835
PDFSYFRTF	9	Unmodified	_PDFSYFRTF_					0	0	0		ENSG00000205929|ENST00000479548|C21orf62	ENSG00000205929|ENST00000479548|C21orf62	ENSG00000205929|ENST00000479548|C21orf62	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	590.277106	1178.53966	0.35352	0.00020867	-0.73197	-0.00043207	-0.37845	-0.00022339	590.2768355170182	16.975	0.28726	16.975	16.81	17.097	0	0.0011847	-0.00032733	NaN	1.4819	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32582			31905	8309	18454	18455							-0.042468474193810835
PDFSYFRTF	9	Unmodified	_PDFSYFRTF_					0	0	0		ENSG00000205929|ENST00000479548|C21orf62	ENSG00000205929|ENST00000479548|C21orf62	ENSG00000205929|ENST00000479548|C21orf62	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	590.277106	1178.53966	0.16685	9.8487E-05	-0.49637	-0.000293	-0.32952	-0.00019451	590.2767546541921	17.114	0.30893	16.997	16.828	17.137	-0.11739	0.022771	-4.9189E-05	NaN	1.4819	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22319			31906	8309	18454	18455							-0.042468474193810835
PDGGDVTHL	9	Unmodified	_PDGGDVTHL_					0	0	0			REV__ENST00000378947.7_2_5:131792826-131792928:+|nuORF	REV__ENST00000378947.7_2_5:131792826-131792928:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2491455078125	2	455.716882	909.41921	-0.047857	-2.1809E-05	-0.014302	-6.5178E-06	-0.062159	-2.8327E-05	455.7166587622132	15.33	0.31183	15.22	15.068	15.38	-0.10981					16	10	2	0	0	0	0.25526	1	968	968		7.9102	0.62092	1	38596	+		31907	20524	18455	18456	39232	39232					-0.03912255412990362
PDGRIIKV	8	Unmodified	_PDGRIIKV_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.5896911621094	2	449.279452	896.544351	0.021132	9.4942E-06	-0.20181	-9.0669E-05	-0.18068	-8.1175E-05	449.2793440263615	41.029	0.59179	41.029	40.688	41.28	0					34	21	2	0	0	0	0.29969	1	8811	8811		34.402	9.0024	1	238800			31908	4111	18456	18457	39233	39233					0.09194081514044683
PDGRIIKV	8	Unmodified	_PDGRIIKV_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	449.279452	896.544351	0.24091	0.00010823	-0.69502	-0.00031226	-0.45411	-0.00020402	449.27907948539	40.888	0.44445	40.981	40.693	41.138	0.092674	0.0018864	-0.00021587	NaN	34.402	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273450			31909	4111	18456	18457							0.09194081514044683
PDGRIIKV	8	Unmodified	_PDGRIIKV_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	449.279452	896.544351	0.056175	2.5238E-05	-0.4638	-0.00020838	-0.40763	-0.00018314	449.27914072156386	40.827	0.34859	40.926	40.694	41.043	0.099407	-0.052465	-8.1115E-06	NaN	34.402	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233860			31910	4111	18456	18457							0.09194081514044683
PDHHFPSP	8	Unmodified	_PDHHFPSP_					0	0	0		ENST00000383746.7_2_3:44379708-44379768:+|nuORF	ENST00000383746.7_2_3:44379708-44379768:+|nuORF	ENST00000383746.7_2_3:44379708-44379768:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.226806640625	2	467.214309	932.414065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.106	1	18.989	18.489	19.489	-0.11739								0	0	0	0.37664	1	2136	2136		2.5775	0.27475	1				31911	10016	18457	18458	39234	39234					-0.054845144849537064
PDIGHEESIV	10	Unmodified	_PDIGHEESIV_					0	0	0			REV__TUBB2B|p.D26E|1|0.05|ENSG00000137285|chr6:3226649-3226649|A/T|missense_variant	REV__TUBB2B|p.D26E|1|0.05|ENSG00000137285|chr6:3226649-3226649|A/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7470092773438	2	548.269478	1094.5244	0.71037	0.00038947	0.18752	0.00010281	0.89789	0.00049229	548.2701093537074	76.861	0.16938	76.83	76.682	76.852	-0.031334					8	6	2	0	0	0	0.3156	1	19769	19769		6.7232	0.51738	1	30177	+		31912	23347	18458	18459	39235	39235					-0.019077590072356543
PDILKQFTK	9	Unmodified	_PDILKQFTK_					0	0	0		ENST00000515762.5_1_5:10442078-10461472:+|nuORF;ENSG00000145491|ENST00000274134|ROPN1L;ENST00000510520.5_1_5:10442060-10472024:+|nuORF	ENST00000515762.5_1_5:10442078-10461472:+|nuORF	ENST00000515762.5_1_5:10442078-10461472:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.316650390625	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.61	1	119.58	119.08	120.08	-0.024361								0	0	0	0.2672	1	30872	30872		0.52476	0	1				31913	4654	18459	18460	39236	39236					0.08222889028456848
PDIQKNAAK	9	Unmodified	_PDIQKNAAK_					0	0	0		nc|ENSG00000165309|Q5W041-5|ARMC3;nc|ENSG00000165309|Q5W041-3|ARMC3;nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3	nc|ENSG00000165309|Q5W041-5|ARMC3	nc|ENSG00000165309|Q5W041-5|ARMC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7906494140625	2	492.777274	983.539994	0.085508	4.2136E-05	-2.0254	-0.00099809	-1.9399	-0.00095596	492.7758622254752	12.51	0.22807	12.413	12.324	12.552	-0.096606					12	7	3	0	0	0	0.33018	1	157	157		4.3292	0.73274	1	27213			31914	5949	18460	18461	39237	39237					0.04756572300470907
PDIQKNAAK	9	Unmodified	_PDIQKNAAK_					0	0	0		nc|ENSG00000165309|Q5W041-5|ARMC3;nc|ENSG00000165309|Q5W041-3|ARMC3;nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3	nc|ENSG00000165309|Q5W041-5|ARMC3	nc|ENSG00000165309|Q5W041-5|ARMC3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	492.777274	983.539994	0.018127	8.9325E-06	-0.88052	-0.0004339	-0.86239	-0.00042497	492.77651207974344	12.501	0.15761	12.501	12.397	12.555	0	0.043725	0.00033034	NaN	4.3292	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26267			31915	5949	18460	18461							0.04756572300470907
PDKARSQLLI	10	Unmodified	_PDKARSQLLI_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2755126953125	2	570.840405	1139.66626	0.40887	0.0002334	-0.32144	-0.00018349	0.087426	4.9906E-05	570.8400745953213	38.469	0.40728	38.56	38.427	38.834	0.090881					21	14	2	0	0	0	0.32054	1	8012	8012		3.2813	0	1	137200			31916	4005	18461	18462	39238	39238					0.10201078805766883
PDKARSQLLI	10	Unmodified	_PDKARSQLLI_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	570.840405	1139.66626	-0.036673	-2.0934E-05	-0.15578	-8.8924E-05	-0.19245	-0.00010986	570.8404499355984	38.581	0.44592	38.581	38.32	38.765	0	-0.0090487	0.00012326	NaN	3.2813	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116390			31917	4005	18461	18462							0.10201078805766883
PDKARSQLLI	10	Unmodified	_PDKARSQLLI_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	570.840405	1139.66626	0.33546	0.0001915	-0.28402	-0.00016213	0.051444	2.9366E-05	570.8400451490901	38.532	0.46017	38.629	38.348	38.808	0.097527	0.039262	-2.315E-05	NaN	3.2813	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126020			31918	4005	18461	18462							0.10201078805766883
PDKERDTI	8	Unmodified	_PDKERDTI_					0	0	0			REV__ENSG00000179941|ENST00000650064|BBS10	REV__ENSG00000179941|ENST00000650064|BBS10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.250732421875	2	487.251089	972.487624	0.15883	7.7389E-05	-0.28439	-0.00013857	-0.12556	-6.118E-05	487.2509337037793	25.315	0.75947	25.315	25.064	25.823	0					59	25	3	0	0	0	0.39068	1	4099	4099		20.454	1.1966	1	245230	+		31919	18096	18462	18463	39239	39239					0.0002798916684696451
PDKERDTI	8	Unmodified	_PDKERDTI_					0	0	0			REV__ENSG00000179941|ENST00000650064|BBS10	REV__ENSG00000179941|ENST00000650064|BBS10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.25042724609375	2	487.251089	972.487624	-0.051199	-2.4947E-05	-0.18912	-9.215E-05	-0.24032	-0.0001171	487.2509490137425	25.383	0.78957	25.352	25.098	25.888	-0.03141					45	27	3	0	0	0	0.35947	1	4122	4122		24.021	4.6586	1	266100	+		31920	18096	18462	18463	39240	39240					0.0002798916684696451
PDKKQRTFQP	10	Unmodified	_PDKKQRTFQP_					0	0	0		ENST00000524846.5_1_8:144643499-144644514:+|nuORF;ENST00000531184.5_1_8:144643499-144645071:+|nuORF;ENSG00000104518|ENST00000262580|GSDMD	ENST00000524846.5_1_8:144643499-144644514:+|nuORF	ENST00000524846.5_1_8:144643499-144644514:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.2833862304688	2	622.840936	1243.66732	-0.36821	-0.00022934	1.5296	0.00095272	1.1614	0.00072338	623.3435102646832	35.276	0.51945	35.276	35	35.52	0					29	18	2	0	0	0	0.32054	1	6992	6992		3.2813	0.54611	1	112180			31921	1897	18463	18464	39241	39241					0.055232931746331815
PDKKQRTFQP	10	Unmodified	_PDKKQRTFQP_					0	0	0		ENST00000524846.5_1_8:144643499-144644514:+|nuORF;ENST00000531184.5_1_8:144643499-144645071:+|nuORF;ENSG00000104518|ENST00000262580|GSDMD	ENST00000524846.5_1_8:144643499-144644514:+|nuORF	ENST00000524846.5_1_8:144643499-144644514:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.283447265625	2	622.840936	1243.66732	-0.68865	-0.00042892	1.2343	0.00076875	0.54561	0.00033983	622.8416439236752	35.11	0.57596	35.186	34.933	35.509	0.075306					32	20	2	0	0	0	0.32054	1	6989	6989		3.2813	0.28607	1	149410			31922	1897	18463	18464	39242	39242					0.055232931746331815
PDKRSALI	8	Unmodified	_PDKRSALI_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7994689941406	2	450.269084	898.523616	0.16825	7.5758E-05	0.80209	0.00036115	0.97034	0.00043691	450.26957427548285	66.47	0.70033	66.456	66.091	66.791	-0.013588					57	25	3	0	0	0	0.34247	1	16550	16550		8.5933	0.68312	1	155970	+		31923	15342	18464	18465	39243	39243					0.07029491134380805
PDLEQVPPS	9	Unmodified	_PDLEQVPPS_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2473449707031	2	491.248015	980.481476	0.16511	8.111E-05	-0.3479	-0.00017091	-0.18279	-8.9797E-05	491.24771848140557	69.492	1.2948	69.492	69.006	70.301	0					101	46	3	0	0	0	0.063853	1	17516	17516		47.749	11.622	1	2521700			31924	706	18465	18466	39244	39244					-0.009545290646542526
PDLEQVPPS	9	Unmodified	_PDLEQVPPS_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.247314453125	2	491.248015	980.481476	0.24714	0.00012141	-0.37167	-0.00018258	-0.12453	-6.1177E-05	491.2477253290672	69.427	1.2651	69.493	69.205	70.471	0.066048					93	44	3	0	0	0	0.079752	1	17496	17496		41.84	5.7126	1	2306400			31925	706	18465	18466	39245	39245					-0.009545290646542526
PDLGSFLLQ	9	Unmodified	_PDLGSFLLQ_					0	0	0		ENST00000588021.5_1_19:6007990-6026242:-|nuORF;nc|ENSG00000087903|P48378-2|RFX2;ENSG00000087903|ENST00000303657|RFX2	ENST00000588021.5_1_19:6007990-6026242:-|nuORF	ENST00000588021.5_1_19:6007990-6026242:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2582702636719	2	495.26875	988.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.213	1	65.201	64.701	65.701	-0.011337								0	0	0	0.18374	1	16244	16244		26.884	3.7352	1				31926	1312	18466	18467	39246	39246					0.028226516946688207
PDLIFEDMEV	10	Unmodified	_PDLIFEDMEV_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.1903381347656	3	403.18989	1206.54784	0.11703	4.7184E-05	-0.12219	-4.9266E-05	-0.0051636	-2.0819E-06	403.1901535440126	55.672	1.1313	55.743	55.245	56.376	0.070885					96	41	4	0	0	0	0.38284	1	13326	13326		6.6304	0.89852	1	1901000			31927	5647	18467	18468	39247	39247					-0.04717081284934466
PDLKNYHK	8	Unmodified	_PDLKNYHK_					0	0	0		nc|ENSG00000118690|Q8NEN0-2|ARMC2;ENSG00000118690|ENST00000392644|ARMC2	nc|ENSG00000118690|Q8NEN0-2|ARMC2	nc|ENSG00000118690|Q8NEN0-2|ARMC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2799987792969	2	507.771991	1013.52943	0.39036	0.00019822	0.15164	7.7E-05	0.54201	0.00027522	507.7719729233485	42.179	0.28827	42.27	42.124	42.413	0.091362					14	9	2	0	0	0	0.34092	1	9187	9187		4.756	0	1	180410			31928	2839	18468	18469	39248	39248					0.02320589646035387
PDLMQKASEKF	11	Unmodified	_PDLMQKASEKF_					0	0	0			REV__nc|ENSG00000148773|P46013-2|MKI67	REV__nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.3296508789062	2	647.329013	1292.64347	0.40383	0.00026141	0.70672	0.00045748	1.1105	0.00071889	647.3291779408551	57.945	0.66541	57.928	57.69	58.355	-0.017197					53	24	3	0	0	0	0.15851	1	14022	14022		34.932	2.1464	1	654220	+		31929	16434	18469	18470	39249	39249					0.008856916259674108
PDLMQKASEKF	11	Unmodified	_PDLMQKASEKF_					0	0	0			REV__nc|ENSG00000148773|P46013-2|MKI67	REV__nc|ENSG00000148773|P46013-2|MKI67	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	647.329013	1292.64347	0.45973	0.0002976	0.43337	0.00028053	0.8931	0.00057813	647.3293028360184	57.638	0.48727	57.638	57.466	57.953	0	-0.045641	-0.00030088	NaN	34.932	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271800	+		31930	16434	18469	18470							0.008856916259674108
PDLMQKASEKF	11	Unmodified	_PDLMQKASEKF_					0	0	0			REV__nc|ENSG00000148773|P46013-2|MKI67	REV__nc|ENSG00000148773|P46013-2|MKI67	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	647.329013	1292.64347	0.40641	0.00026308	0.92531	0.00059898	1.3317	0.00086207	647.3294958583651	57.4	0.46995	57.486	57.318	57.788	0.085617	-0.19826	0.00033602	NaN	34.932	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	460750	+		31931	16434	18469	18470							0.008856916259674108
PDLPYVYV	8	Unmodified	_PDLPYVYV_					0	0	0		nc|ENSG00000149305|O95264-2|HTR3B;ENSG00000149305|ENST00000260191|HTR3B	nc|ENSG00000149305|O95264-2|HTR3B	nc|ENSG00000149305|O95264-2|HTR3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2522277832031	2	483.252569	964.490584	-0.11802	-5.7035E-05	-0.23161	-0.00011192	-0.34963	-0.00016896	483.25235319171355	14.053	0.34144	13.948	13.79	14.131	-0.10466					27	11	3	0	0	0	0.46491	1	605	605		0.69038	0	1	398600			31932	4860	18470	18471	39250	39250					0.006918642916616591
PDLRRVIEEI	10	Unmodified	_PDLRRVIEEI_					0	0	0			REV__FEN1|p.P269Tfs*29|1|0.38|ENSG00000168496|chr11:61796163-61796164|-/AC|frameshift_variant	REV__FEN1|p.P269Tfs*29|1|0.38|ENSG00000168496|chr11:61796163-61796164|-/AC|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.7923583984375	2	620.356419	1238.69829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.8	1	104.8	104.3	105.3	0.0011444								0	0	0	0.37739	1	27837	27837		3.2813	0.28607	1		+		31933	17463	18471	18472	39251	39251					0.088484464889234
PDLYNGFVF	9	Unmodified	_PDLYNGFVF_					0	0	0			REV__EXTL3|p.S208N|1|0.19|ENSG00000012232|chr8:28716682-28716682|G/A|missense_variant	REV__EXTL3|p.S208N|1|0.19|ENSG00000012232|chr8:28716682-28716682|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2989501953125	2	536.260925	1070.5073	0.16292	8.7367E-05	-4.3403	-0.0023276	-4.1774	-0.0022402	536.2583123497355	18.303	0.34586	18.186	18.012	18.358	-0.11739					16	11	2	0	0	0	0.25706	1	1893	1893		6.7232	0	1	40892	+		31934	22681	18472	18473	39252	39252					-0.025136348223895766
PDNEVVNCLL	10	Unmodified	_PDNEVVNCLL_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2748413085938	2	558.273706	1114.53286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.567	1	78.537	78.037	79.037	-0.030434								0	0	0	0.35216	1	20318	20318		13.906	3.8321	1		+		31935	17857	18473	18474	39253	39253					-0.0198252836228221
PDNIELHV	8	Unmodified	_PDNIELHV_					0	0	0			REV__CLSPN|p.S798Vfs*39|1|0.37|ENSG00000092853|chr1:35748485-35748485|T/-|frameshift_variant	REV__CLSPN|p.S798Vfs*39|1|0.37|ENSG00000092853|chr1:35748485-35748485|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.7430419921875	2	468.742899	935.471246	-0.032742	-1.5348E-05	0.28921	0.00013557	0.25647	0.00012022	468.7428734625829	26.815	0.58602	26.815	26.586	27.172	0					46	20	3	0	0	0	0.30241	1	4453	4453		32.305	1.602	1	266170	+		31936	13232	18474	18475	39254	39254					0.000929080007608718
PDNIELHV	8	Unmodified	_PDNIELHV_					0	0	0			REV__CLSPN|p.S798Vfs*39|1|0.37|ENSG00000092853|chr1:35748485-35748485|T/-|frameshift_variant	REV__CLSPN|p.S798Vfs*39|1|0.37|ENSG00000092853|chr1:35748485-35748485|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7430114746094	2	468.742899	935.471246	0.051624	2.4198E-05	0.12867	6.0315E-05	0.1803	8.4513E-05	468.74291065045475	26.831	0.50505	26.81	26.564	27.069	-0.021412					37	17	3	0	0	0	0.39068	1	4523	4523		20.454	1.0917	1	287120	+		31937	13232	18474	18475	39255	39255					0.000929080007608718
PDNRDNRLEGN	11	Unmodified	_PDNRDNRLEGN_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;YLPM1|p.D2015Vfs*40|1|0.15|ENSG00000119596|chr14:74821070-74821070|A/-|frameshift_variant;ENSG00000119596|ENST00000325680|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.8728332519531	3	433.872723	1298.59634	0.12698	5.5094E-05	0.12927	5.6086E-05	0.25625	0.00011118	433.87280050362455	36.016	1.3472	36.102	35.597	36.944	0.08625					139	48	4	0	0	0	0.42506	1	7188	7188		7.9454	1.3219	1	3574100			31938	12678;2886	18475	18476	39256	39256					-0.041014516008317514
PDPALAPFV	9	Unmodified	_PDPALAPFV_					0	0	0			REV__ENST00000221859.8_1_19:36605990-36606173:-|nuORF	REV__ENST00000221859.8_1_19:36605990-36606173:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.789306640625	2	463.752736	925.490919	0.55728	0.00025844	0.57581	0.00026703	1.1331	0.00052547	463.75281888073255	56.829	0.44339	56.81	56.646	57.09	-0.019081					32	15	3	0	0	0	0.21137	1	13654	13654		24.674	0	1	603260	+		31939	19430	18476	18477	39257	39257					0.025192840115323634
PDPKVRSTL	9	Unmodified	_PDPKVRSTL_					0	0	0			REV__nc|ENSG00000131724|P78552-2|IL13RA1	REV__nc|ENSG00000131724|P78552-2|IL13RA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2799987792969	2	506.792924	1011.57129	0.4838	0.00024519	-0.8278	-0.00041952	-0.344	-0.00017434	506.79256211624534	41.938	0.54072	42.034	41.934	42.475	0.096622					27	18	2	0	0	0	0.2322	1	9187	9187		14.838	4.0143	1	269780	+		31940	15530	18477	18478	39258	39258					0.06597145334569632
PDPPPPPPP	9	Unmodified	_PDPPPPPPP_					0	0	0		ENSG00000131398|ENST00000477616|KCNC3	ENSG00000131398|ENST00000477616|KCNC3	ENSG00000131398|ENST00000477616|KCNC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2586975097656	2	455.737086	909.459619	0.028557	1.3014E-05	-2.9226	-0.0013319	-2.894	-0.0013189	455.7361772119745	25.081	0.75599	25.025	24.43	25.186	-0.055931					29	26	2	0	0	0	0.21137	1	3933	3933		24.674	0	1	36704			31941	3561	18478	18479	39259	39259					0.0012671097742895654
PDPSRSIF	8	Unmodified	_PDPSRSIF_					0	0	0		nc|ENSG00000136193|Q12765-3|SCRN1;ENSG00000136193|ENST00000242059|SCRN1;nc|ENSG00000136193|Q12765-2|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.256103515625	2	459.737617	917.460681	0.25076	0.00011529	-0.023658	-1.0877E-05	0.22711	0.00010441	459.7374247726516	31.985	1.0094	31.985	31.772	32.782	0					62	35	2	0	0	0	0.34198	1	6280	6280		10.824	0	1	224420			31942	3952	18479	18480	39260	39260					-0.0013507465365591997
PDPSRSIF	8	Unmodified	_PDPSRSIF_					0	0	0		nc|ENSG00000136193|Q12765-3|SCRN1;ENSG00000136193|ENST00000242059|SCRN1;nc|ENSG00000136193|Q12765-2|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	459.737617	917.460681	0.31636	0.00014544	-0.068347	-3.1422E-05	0.24801	0.00011402	459.73732349670763	31.881	1.01	31.924	31.652	32.662	0.042366	-0.030823	-2.488E-05	NaN	15.847	59	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303710			31943	3952	18479	18480							-0.0013507465365591997
PDQDWYYL	8	Unmodified	_PDQDWYYL_					0	0	0			REV__ENSG00000141736|ENST00000269571|ERBB2	REV__ENSG00000141736|ENST00000269571|ERBB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2799682617188	2	550.24019	1098.46583	0.53784	0.00029594	-0.5855	-0.00032217	-0.047657	-2.6223E-05	550.2400252964395	40.737	0.54083	40.737	40.334	40.875	0					34	19	2	0	0	0	0.34131	1	8649	8649		7.9102	0	1	129410	+		31944	16092	18480	18481	39261	39261					-0.07946815581726696
PDQHLELKK	9	Unmodified	_PDQHLELKK_					0	0	0		nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8193359375	2	554.31148	1106.60841	0.16219	8.9901E-05	-0.92639	-0.00051351	-0.7642	-0.00042361	554.3109229506211	16.193	0.26027	16.131	15.975	16.235	-0.062534					12	8	2	0	0	0	0.26204	1	1260	1260		1.4819	0	1	26660			31945	13000	18481	18482	39262	39262					0.059368168803075605
PDQKNHPDHL	10	Unmodified	_PDQKNHPDHL_					0	0	0		Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|115|3|sense	Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|115|3|sense	Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|115|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.277099609375	2	600.791444	1199.56833	0.2344	0.00014083	0.48041	0.00028862	0.71481	0.00042945	600.7915357117057	22.985	0.34713	22.985	22.763	23.11	0					19	11	2	0	0	0	0.32132	1	3338	3338		1.4819	0.15237	1	37369			31946	12357	18482	18483	39263	39263					-0.02346729790247082
PDQKRKLIRE	10	Unmodified	_PDQKRKLIRE_					0	0	0		ENST00000555683.1_1_14:35005207-35008876:-|nuORF;ENSG00000129518|ENST00000250454|EAPP	ENST00000555683.1_1_14:35005207-35008876:-|nuORF	ENST00000555683.1_1_14:35005207-35008876:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.882080078125	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.026	1	97.021	96.521	97.521	-0.0055466								0	0	0	0.38166	1	25964	25964		1.4819	0	1				31947	3428	18483	18484	39264	39264					0.12211243991396259
PDQLRLYDKP	10	Unmodified	_PDQLRLYDKP_					0	0	0			REV__ENST00000370018.7_1_20:62290811-62293901:+|nuORF	REV__ENST00000370018.7_1_20:62290811-62293901:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.8980407714844	3	415.559305	1243.65609	0.074132	3.0806E-05	-1.2653	-0.00052579	-1.1911	-0.00049499	415.55859982235853	18.512	0.36674	18.394	18.215	18.582	-0.11739					18	12	2	0	0	0	0.31994	1	1908	1908		5.4027	1.5568	1	52510	+		31948	20203	18484	18485	39265	39265					0.044004710804983915
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.9854125976562	3	512.985457	1535.93454	0.26465	0.00013576	-0.22273	-0.00011426	0.04191	2.1499E-05	512.985403650528	92.395	0.44609	92.395	92.138	92.584	0					104	34	4	0	0	0	0.48495	1	24565	24565		0.08335	0.010087	1	328230	+		31949	13964	18485	18486	39266	39266					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.9855346679688	3	512.985457	1535.93454	0.19402	9.9531E-05	-0.14577	-7.4779E-05	0.04825	2.4751E-05	512.9853356679065	93.861	0.51783	93.861	93.542	94.06	0					110	39	3	0	0	0	0.48495	3	24931	24931;24972;25013		0.08335	0.08335	1	380100	+		31950	13964	18485	18486	39267;39268;39269	39267					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.9849853515625	3	512.985457	1535.93454	0.14136	7.2516E-05	-0.13334	-6.8401E-05	0.0080207	4.1145E-06	512.9853912892444	94.821	1.35	94.821	94.033	95.383	0					213	121	2	0	0	0	0.48495	10	25105	25105;25150;25187;25222;25260;25297;25333;25368;25404;25440		0.08335	0.08335	1	1088400	+		31951	13964	18485	18486	39270;39271;39272;39273;39274;39275;39276;39277;39278;39279	39270					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.9854736328125	3	512.985457	1535.93454	0.097827	5.0184E-05	0.13033	6.6855E-05	0.22815	0.00011704	512.9854768494287	95.486	1.0977	95.486	95.319	96.417	0					327	110	5	0	0	0	0.48495	5	25472	25472;25505;25543;25580;25646		0.08335	0.08335	1	786550	+		31952	13964	18485	18486	39280;39281;39282;39283;39284	39280					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.9853515625	3	512.985457	1535.93454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.842	1	92.842	92.342	93.342	0								0	0	0	0.38223	1	24709	24709		0.08335	0	1		+		31953	13964	18485	18486	39285	39285					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7893676757812	3	512.985457	1535.93454	0.26465	0.00013576	-0.22273	-0.00011426	0.04191	2.1499E-05	512.985403650528	92.395	0.44609	92.395	92.138	92.584	0					104	34	4	0	0	0	0.33352	1	24523	24523		0.08335	0.010087	1	328230	+		31954	13964	18485	18486	39286	39286					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.789306640625	3	512.985457	1535.93454	0.28527	0.00014634	-0.21415	-0.00010986	0.071115	3.6481E-05	513.3195230620717	91.986	0.063416	91.986	91.958	92.022	0					4	2	2	0	0	0	0.33352	1	24443	24443		0	0	1	73542	+		31955	13964	18485	18486	39287	39287					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.268310546875	3	512.985457	1535.93454	0.19402	9.9531E-05	-0.14577	-7.4779E-05	0.04825	2.4751E-05	512.9853356679065	93.861	0.51783	93.861	93.542	94.06	0					110	39	3	0	0	0	0.33352	1	24985	24985		0.08335	0.08335	1	380100	+		31956	13964	18485	18486	39288	39288					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2686157226562	3	512.985457	1535.93454	0.097827	5.0184E-05	0.13033	6.6855E-05	0.22815	0.00011704	512.9854768494287	95.486	1.0977	95.486	95.319	96.417	0					327	110	5	0	0	0	0.33352	1	25610	25610		0.08335	0.08335	1	786550	+		31957	13964	18485	18486	39289	39289					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9857788085938	3	512.985457	1535.93454	0.24271	0.0001245	-0.30314	-0.00015551	-0.060437	-3.1003E-05	512.985388700636	92.412	0.6161	92.501	92.01	92.626	0.089195					69	42	2	0	0	0	0.48495	2	24507	24507;24552		0.08335	0.010087	1	460430	+		31958	13964	18485	18486	39290;39291	39290					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9854736328125	3	512.985457	1535.93454	0.17209	8.8281E-05	-0.0077472	-3.9742E-06	0.16435	8.4307E-05	512.985411316829	94.685	0.94086	94.768	94.123	95.064	0.082779					333	77	5	0	0	0	0.48495	6	25109	25109;25147;25185;25224;25263;25304		0.08335	0.08335	1	3044600	+		31959	13964	18485	18486	39292;39293;39294;39295;39296;39297	39292					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.985595703125	3	512.985457	1535.93454	0.15086	7.7388E-05	0.097964	5.0254E-05	0.24882	0.00012764	512.9854785989495	95.207	1.4638	95.29	94.991	96.454	0.082779					488	133	5	0	0	0	0.48495	7	25342	25342;25379;25488;25522;25557;25597;25642		0.08335	0.08335	1	2048500	+		31960	13964	18485	18486	39298;39299;39300;39301;39302;39303;39304	39298					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9854125976562	3	512.985457	1535.93454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.491	1	92.581	92.081	93.081	0.089195								0	0	0	0.38223	1	24597	24597		0.08335	0.010087	1		+		31961	13964	18485	18486	39305	39305					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9855346679688	3	512.985457	1535.93454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.785	1	93.871	93.371	94.371	0.08667								0	0	0	0.38223	1	24988	24988		0.08335	0	1		+		31962	13964	18485	18486	39306	39306					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9854736328125	3	512.985457	1535.93454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.908	1	93.994	93.494	94.494	0.08667								0	0	0	0.38198	1	25026	25026		0.36667	0.27183	1		+		31963	13964	18485	18486	39307	39307					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9854736328125	3	512.985457	1535.93454	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.04	1	94.127	93.627	94.627	0.08667								0	0	0	0.38223	1	25067	25067		0.08335	0.08335	1		+		31964	13964	18485	18486	39308	39308					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7891845703125	3	512.985457	1535.93454	0.24271	0.0001245	-0.30314	-0.00015551	-0.060437	-3.1003E-05	512.985388700636	92.412	0.6161	92.501	92.01	92.626	0.089195					69	42	2	0	0	0	0.33352	1	24434	24434		0.08335	0.010087	1	460430	+		31965	13964	18485	18486	39309	39309					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.985595703125	3	512.985457	1535.93454	0.22034	0.00011303	-0.12889	-6.6118E-05	0.091455	4.6915E-05	512.9853424358927	93.072	1.5197	93.161	92.069	93.589	0.089195					194	123	3	0	0	0	0.33352	1	24644	24644		0.08335	0.010087	1	1083700	+		31966	13964	18485	18486	39310	39310					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.985595703125	3	512.985457	1535.93454	0.17209	8.8281E-05	-0.0077472	-3.9742E-06	0.16435	8.4307E-05	512.985411316829	94.685	0.94086	94.768	94.123	95.064	0.082779					333	77	5	0	0	0	0.33352	1	25342	25342		0.08335	0.08335	1	3044600	+		31967	13964	18485	18486	39311	39311					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.9854736328125	3	512.985457	1535.93454	0.3796	0.00019473	-0.32207	-0.00016522	0.057527	2.951E-05	512.9853064210347	92.347	0.86625	92.348	91.848	92.714	0.00047302					159	56	4	0	0	0	0.48495	4	24532	24532;24575;24620;24664		0.08335	0.010087	1	636420	+		31968	13964	18485	18486	39312;39313;39314;39315	39312					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.985595703125	3	512.985457	1535.93454	0.29783	0.00015278	-0.084592	-4.3394E-05	0.21323	0.00010939	512.9853669633272	94.909	2.7831	94.907	93.879	96.662	-0.0020065					726	251	4	0	0	0	0.48279	16	25174	25093;25133;25174;25214;25252;25291;25331;25371;25410;25446;25516;25553;25593;25632;25675;25770		0.36667	0.36667	1	2444700	+		31969	13964	18485	18486	39316;39317;39318;39319;39320;39321;39322;39323;39324;39325;39326;39327;39328;39329;39330;39331	39318					0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	512.985457	1535.93454	0.25312	0.00012985	-0.32045	-0.00016438	-0.067324	-3.4536E-05	513.3192926728566	91.912	0.11947	92.002	91.924	92.043	0.090668	-0.24591	-2.5068E-05	NaN	0.08335	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176190	+		31970	13964	18485	18486							0.18801235896557955
PDQRLRKRRRR	11	Unmodified	_PDQRLRKRRRR_					0	0	0			REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	REV__ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	512.985457	1535.93454	0.35351	0.00018134	-0.22703	-0.00011646	0.12648	6.4883E-05	512.9852944655141	93.202	1.3604	93.201	92.713	94.073	-0.00051117	0.02023	-3.1466E-05	NaN	0.08335	332	115	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1084300	+		31971	13964	18485	18486							0.18801235896557955
PDQRPGKKL	9	Unmodified	_PDQRPGKKL_					0	0	0			REV__TNFRSF21|p.L570Sfs*3|1|0.07|ENSG00000146072|chr6:47234700-47234701|-/GAAGA|frameshift_variant	REV__TNFRSF21|p.L570Sfs*3|1|0.07|ENSG00000146072|chr6:47234700-47234701|-/GAAGA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7921142578125	2	519.806365	1037.59818	0.25598	0.00013306	-0.36801	-0.0001913	-0.11203	-5.8234E-05	519.8060550245725	31.051	0.65532	31.078	30.81	31.466	0.027157					63	23	3	0	0	0	0.25989	1	5685	5685		14.838	4.0143	1	882870	+		31972	16327	18486	18487	39332	39332					0.08088253945743418
PDQSFGLLV	9	Unmodified	_PDQSFGLLV_					0	0	0			REV__ENSG00000221840|ENST00000319760|OR4A5	REV__ENSG00000221840|ENST00000319760|OR4A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7910461425781	2	488.260925	974.507297	0.071058	3.4695E-05	0.07054	3.4442E-05	0.1416	6.9137E-05	488.2609089461275	76.077	0.627	76.077	75.769	76.396	0					32	22	2	0	0	0	0.20167	1	19585	19585		22.736	0.98964	1	360860	+		31973	19093	18487	18488	39333	39333					0.019023651776251427
PDRQPRRLSAP	11	Unmodified	_PDRQPRRLSAP_					0	0	0			REV__ENST00000505306.5_1_17:48167246-48167522:+|nuORF	REV__ENST00000505306.5_1_17:48167246-48167522:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.8467407226562	2	646.862734	1291.71092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.59	1	37.59	37.09	38.09	0								0	0	0	0.34403	1	7756	7756		9.544	4.2471	1		+		31974	21738	18488	18489	39334	39334					0.07672902671811244
PDRRRRRRQQ	10	Unmodified	_PDRRRRRRQQ_					0	0	0			REV__ENSG00000113593|ENST00000261308|PPWD1	REV__ENSG00000113593|ENST00000261308|PPWD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.2782897949219	3	475.278641	1422.81409	0.30941	0.00014706	-0.69999	-0.00033269	-0.39058	-0.00018563	475.2782623211067	55.113	1.3818	55.113	54.526	55.907	0					156	50	4	0	0	0	0.41512	1	13078	13078		0.69767	0.1345	1	2747500	+		31975	14815	18489	18490	39335	39335					0.11959827902978759
PDSIQVRCF	9	Unmodified	_PDSIQVRCF_					0	0	0		ENST00000470997.1_1_6:33095649-33096858:+|nuORF	ENST00000470997.1_1_6:33095649-33096858:+|nuORF	ENST00000470997.1_1_6:33095649-33096858:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3082885742188	2	532.763309	1063.51206	0.32869	0.00017511	0.28575	0.00015224	0.61444	0.00032735	532.7633054968092	61.5	0.50014	61.5	61.335	61.836	0					31	18	2	0	0	0	0.21905	1	15193	15193		7.2892	0	1	331740			31976	10871	18490	18491	39336	39336					-0.017150739512771906
PDSLFRSLL	9	Unmodified	_PDSLFRSLL_					0	0	0		TDRD6|p.T979Kfs*7|1|0.07|ENSG00000180113|chr6:46691063-46691075|ACACATGATATGA/-|frameshift_variant;nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6	TDRD6|p.T979Kfs*7|1|0.07|ENSG00000180113|chr6:46691063-46691075|ACACATGATATGA/-|frameshift_variant	TDRD6|p.T979Kfs*7|1|0.07|ENSG00000180113|chr6:46691063-46691075|ACACATGATATGA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2684936523438	2	524.295299	1046.57605	0.37217	0.00019513	0.77476	0.00040621	1.1469	0.00060133	524.2957314102532	42.764	0.59555	42.849	42.618	43.214	0.085197					46	21	3	0	0	0	0.24848	1	9420	9420		13.906	0	1	694300			31977	7166	18491	18492	39337	39337					0.05462029477325814
PDTAWTQEEF	10	Unmodified	_PDTAWTQEEF_					0	0	0			REV__nc|ENSG00000125637|Q8NDX1-2|PSD4	REV__nc|ENSG00000125637|Q8NDX1-2|PSD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.2645874023438	2	612.264393	1222.51423	0.2712	0.00016605	0.094215	5.7684E-05	0.36541	0.00022373	612.2644005239356	43.138	0.95074	43.138	42.842	43.793	0					102	34	5	0	0	0	0.093201	2	9470	9420;9470		49.554	20.473	1	3753900	+		31978	15274	18492	18493	39338;39339	39339					-0.08812366732468035
PDTAWTQEEF	10	Unmodified	_PDTAWTQEEF_					0	0	0			REV__nc|ENSG00000125637|Q8NDX1-2|PSD4	REV__nc|ENSG00000125637|Q8NDX1-2|PSD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.264404296875	2	612.264393	1222.51423	0.14167	8.6739E-05	0.058404	3.5759E-05	0.20007	0.0001225	612.2643689895506	42.618	1.1995	42.704	42.407	43.606	0.085197					109	43	4	0	0	0	0.15473	3	9256	9256;9302;9355		38.176	15.439	1	4182000	+		31979	15274	18492	18493	39340;39341;39342	39340					-0.08812366732468035
PDTAWTQEEF	10	Unmodified	_PDTAWTQEEF_					0	0	0			REV__nc|ENSG00000125637|Q8NDX1-2|PSD4	REV__nc|ENSG00000125637|Q8NDX1-2|PSD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.2645874023438	2	612.264393	1222.51423	0.13474	8.2499E-05	0.1373	8.4067E-05	0.27205	0.00016657	612.2644302378536	42.551	0.97951	42.643	42.354	43.334	0.091362					96	35	4	0	0	0	0.15473	2	9275	9275;9325		38.176	15.439	1	4539200	+		31980	15274	18492	18493	39343;39344	39343					-0.08812366732468035
PDTAWTQEEF	10	Unmodified	_PDTAWTQEEF_					0	0	0			REV__nc|ENSG00000125637|Q8NDX1-2|PSD4	REV__nc|ENSG00000125637|Q8NDX1-2|PSD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.2645874023438	2	612.264393	1222.51423	0.13474	8.2499E-05	0.1373	8.4067E-05	0.27205	0.00016657	612.2644302378536	42.551	0.97951	42.643	42.354	43.334	0.091362					96	35	4	0	0	0	0.24359	1	9228	9228		38.176	15.439	1	4539200	+		31981	15274	18492	18493	39345	39345					-0.08812366732468035
PDTAWTQEEF	10	Unmodified	_PDTAWTQEEF_					0	0	0			REV__nc|ENSG00000125637|Q8NDX1-2|PSD4	REV__nc|ENSG00000125637|Q8NDX1-2|PSD4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	612.264393	1222.51423	0.2712	0.00016605	0.094215	5.7684E-05	0.36541	0.00022373	612.2644005239356	43.138	0.95074	43.138	42.842	43.793	0	0	0	NaN	49.554	102	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3753900	+		31982	15274	18492	18493							-0.08812366732468035
PDTAWTQEEF	10	Unmodified	_PDTAWTQEEF_					0	0	0			REV__nc|ENSG00000125637|Q8NDX1-2|PSD4	REV__nc|ENSG00000125637|Q8NDX1-2|PSD4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	612.264393	1222.51423	0.14167	8.6739E-05	0.058404	3.5759E-05	0.20007	0.0001225	612.2643689895506	42.618	1.1995	42.704	42.407	43.606	0.085197	0.03049	-3.9504E-05	NaN	38.176	109	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4182000	+		31983	15274	18492	18493							-0.08812366732468035
PDTKAKINK	9	Unmodified	_PDTKAKINK_					0	0	0			REV__ENST00000502253.1_1_5:83681343-83681433:+|nuORF	REV__ENST00000502253.1_1_5:83681343-83681433:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.5846252441406	2	507.800749	1013.58694	0.45813	0.00023264	-0.17139	-8.7031E-05	0.28674	0.00014561	507.8005624891016	32.697	0.42425	32.697	32.5	32.924	0					24	14	2	0	0	0	0.25526	1	6266	6266		7.9102	0	1	137170	+		31984	21712	18493	18494	39346	39346					0.08069431851606623
PDTPNKNKKL	10	Unmodified	_PDTPNKNKKL_					0	0	0			REV__nc|ENSG00000102466|Q92915-2|FGF14	REV__nc|ENSG00000102466|Q92915-2|FGF14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.2725830078125	2	577.830037	1153.64552	0.16963	9.8019E-05	-0.5237	-0.00030261	-0.35407	-0.00020459	577.8302600157604	27.076	0.48283	27.076	26.841	27.324	0					26	16	2	0	0	0	0.32054	1	4563	4563		3.2813	3.2813	1	51126	+		31985	22919	18494	18495	39347	39347					0.07484488426075586
PDVHPTPL	8	Unmodified	_PDVHPTPL_					0	0	0			REV__ENST00000476089.1_1_2:182321937-182323202:+|nuORF	REV__ENST00000476089.1_1_2:182321937-182323202:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.1955261230469	2	438.23471	874.454868	-0.10154	-4.4497E-05	-0.073472	-3.2198E-05	-0.17501	-7.6695E-05	438.23465937020956	27.323	0.46638	27.323	27.063	27.53	0					25	15	2	0	0	0	0.34319	1	4580	4580		5.7604	0	1	70174	+		31986	21413	18495	18496	39348	39348					0.012618268346614059
PDVHPTPL	8	Unmodified	_PDVHPTPL_					0	0	0			REV__ENST00000476089.1_1_2:182321937-182323202:+|nuORF	REV__ENST00000476089.1_1_2:182321937-182323202:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	438.23471	874.454868	-0.14809	-6.4897E-05	-0.25631	-0.00011232	-0.4044	-0.00017722	438.2344603400247	27.337	0.51791	27.315	27.041	27.559	-0.021412	-0.01463	-0.00015543	NaN	5.7604	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71483	+		31987	21413	18495	18496							0.012618268346614059
PDVHPTPL	8	Unmodified	_PDVHPTPL_					0	0	0			REV__ENST00000476089.1_1_2:182321937-182323202:+|nuORF	REV__ENST00000476089.1_1_2:182321937-182323202:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	438.23471	874.454868	-0.11118	-4.8725E-05	0.26266	0.00011511	0.15148	6.6383E-05	438.23481445128925	27.363	0.54442	27.351	27.07	27.614	-0.01156	0.021458	0.00029944	NaN	5.7604	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73645	+		31988	21413	18495	18496							0.012618268346614059
PDVLEYYKN	9	Unmodified	_PDVLEYYKN_					0	0	0		ENSG00000033327|ENST00000361507|GAB2;nc|ENSG00000033327|Q9UQC2-2|GAB2;ENST00000534823.1_1_11:77991605-78128766:-|nuORF;ENST00000526030.1_1_11:77938056-78128734:-|nuORF;ENSG00000109458|ENST00000262994|GAB1;nc|ENSG00000109458|Q13480-2|GAB1;nc|ENSG00000215568|Q2WGN9|GAB4	ENSG00000033327|ENST00000361507|GAB2;ENSG00000109458|ENST00000262994|GAB1;nc|ENSG00000215568|Q2WGN9|GAB4	ENSG00000033327|ENST00000361507|GAB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.3128662109375	2	570.782222	1139.54989	0.051643	2.9477E-05	4.031	0.0023008	4.0826	0.0023303	570.7842591257881	18.76	0.7625	18.76	18.563	19.325	0					43	26	2	0	0	0	0.32733	1	1987	1987		4.756	0.22714	1	104100			31989	561;2254;12945	18496	18497	39349	39349					-0.014302844848316454
PDVLLHSA	8	Unmodified	_PDVLLHSA_					0	0	0		ENSG00000008196|ENST00000393655|TFAP2B;nc|ENSG00000008196|Q92481-2|TFAP2B	ENSG00000008196|ENST00000393655|TFAP2B	ENSG00000008196|ENST00000393655|TFAP2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.245849609375	2	426.23471	850.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.786	1	77.754	77.254	78.254	-0.031334								0	0	0	0.37078	1	20079	20079		5.2307	0	1				31990	389	18497	18498	39350	39350					0.023658268346594014
PDVLSVQERG	10	Unmodified	_PDVLSVQERG_					0	0	0			REV__nc|ENSG00000292373|Q01113-2|IL9R	REV__nc|ENSG00000292373|Q01113-2|IL9R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7644653320312	2	550.290745	1098.56694	0.28065	0.00015444	0.049891	2.7455E-05	0.33054	0.00018189	550.2906876540138	18.133	0.40185	18.133	17.93	18.332	0					15	13	2	0	0	0	0.31691	1	1886	1886		9.3831	0	1	35523	+		31991	15230	18498	18499	39351	39351					0.02159636120995856
PDYFERLES	9	Unmodified	_PDYFERLES_					0	0	0			REV__ENST00000588648.7_1_19:32959648-32972015:+|nuORF	REV__ENST00000588648.7_1_19:32959648-32972015:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.268798828125	2	578.269478	1154.5244	0.33492	0.00019367	-0.46647	-0.00026975	-0.13156	-7.6075E-05	578.2690209470558	53.026	0.74959	53.026	52.743	53.493	0					67	27	3	0	0	0	0.088443	1	12480	12480		39.95	0	1	1966900	+		31992	18048	18499	18500	39352	39352					-0.046677590072249586
PDYKSLLRN	9	Unmodified	_PDYKSLLRN_					0	0	0			REV__nc|ENSG00000064666|Q99439-2|CNN2	REV__nc|ENSG00000064666|Q99439-2|CNN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7892456054688	2	553.303655	1104.59276	0.299	0.00016544	0.88049	0.00048718	1.1795	0.00065261	553.3043819558502	48.763	0.26834	48.795	48.66	48.929	0.032047					13	9	2	0	0	0	0.18936	1	11200	11200		26.268	0	1	296570	+		31993	13647	18500	18501	39353	39353					0.044645303632933064
PDYREIESF	9	Unmodified	_PDYREIESF_					0	0	0			REV__ENSG00000185915|ENST00000379499|KLHL34	REV__ENSG00000185915|ENST00000379499|KLHL34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.2689819335938	2	578.269478	1154.5244	0.34189	0.0001977	-0.44692	-0.00025844	-0.10503	-6.0734E-05	578.2689862666524	53.214	0.92619	53.204	52.889	53.815	-0.0096092					78	34	3	0	0	0	0.088391	1	12516	12516		39.957	0	1	2123100	+		31994	18418	18501	18502	39354	39354					-0.046677590072249586
PDYREIESF	9	Unmodified	_PDYREIESF_					0	0	0			REV__ENSG00000185915|ENST00000379499|KLHL34	REV__ENSG00000185915|ENST00000379499|KLHL34	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	578.269478	1154.5244	0.33492	0.00019367	-0.46647	-0.00026975	-0.13156	-7.6075E-05	578.2690209470558	53.026	0.74959	53.026	52.743	53.493	0	-0.071043	6.7541E-05	NaN	39.957	67	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1966900	+		31995	18418	18501	18502							-0.046677590072249586
PDYREIESF	9	Unmodified	_PDYREIESF_					0	0	0			REV__ENSG00000185915|ENST00000379499|KLHL34	REV__ENSG00000185915|ENST00000379499|KLHL34	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	578.269478	1154.5244	0.60079	0.00034742	-0.65869	-0.0003809	-0.057903	-3.3484E-05	578.2688461223586	53.005	0.76236	53.061	52.772	53.535	0.056255	-0.036093	-0.00015477	NaN	39.957	60	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2003700	+		31996	18418	18501	18502							-0.046677590072249586
PEARLGSGAEC	11	Unmodified	_PEARLGSGAEC_					0	0	0			REV__ENST00000416757.1_1_2:238978126-238978240:+|nuORF	REV__ENST00000416757.1_1_2:238978126-238978240:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.26904296875	2	545.253305	1088.49206	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.802	1	34.877	34.377	35.377	0.075306								0	0	0	0.29456	1	6902	6902		20.415	4.5674	1		+		31997	20823	18502	18503	39355	39355					-0.048648696818645476
PEAYQPRR	8	Unmodified	_PEAYQPRR_					0	0	0		ENST00000372390.8_1_X:106959563-106959707:-|nuORF	ENST00000372390.8_1_X:106959563-106959707:-|nuORF	ENST00000372390.8_1_X:106959563-106959707:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.76776123046875	2	508.76724	1015.51993	0.32913	0.00016745	-0.74527	-0.00037917	-0.41614	-0.00021172	508.7667065373276	17.075	0.91248	17.015	16.676	17.588	-0.060429					91	32	4	0	0	0	0.44389	1	1417	1417		7.9102	0.3012	1	390180			31998	9838	18503	18504	39356	39356					0.01278821360517668
PECDKTFR	8	Unmodified	_PECDKTFR_					0	0	0		ENSG00000204947|ENST00000378061|ZNF425	ENSG00000204947|ENST00000378061|ZNF425	ENSG00000204947|ENST00000378061|ZNF425	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.80126953125	2	498.234384	994.454216	0.2943	0.00014663	0.5098	0.000254	0.8041	0.00040063	498.23447765675905	24.223	0.5127	24.184	23.965	24.478	-0.038927					30	17	2	0	0	0	0.31934	1	3700	3700		12.532	0.89125	1	172290			31999	8263	18504	18505	39357	39357					-0.043233358766769925
PECLMDVL	8	Unmodified	_PECLMDVL_					0	0	0			REV__ENST00000367858.9_3_6:134490916-134491072:-|nuORF	REV__ENST00000367858.9_3_6:134490916-134491072:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7680358886719	2	460.216814	918.419076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.175	1	74.145	73.645	74.645	-0.030655								0	0	0	0.35014	1	18981	18981		14.582	5.2343	1		+		32000	20322	18505	18506	39358	39358					-0.043397147288601445
PEDVYIVKN	9	Unmodified	_PEDVYIVKN_					0	0	0		nc|ENSG00000113763|Q6ZN44-2|UNC5A;ENSG00000113763|ENST00000329542|UNC5A	nc|ENSG00000113763|Q6ZN44-2|UNC5A	nc|ENSG00000113763|Q6ZN44-2|UNC5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.294921875	2	538.784764	1075.55498	0.66648	0.00035909	-0.59772	-0.00032204	0.068758	3.7046E-05	538.7859622372412	92.631	0.95685	92.631	92.317	93.274	0.00046539					106	79	2	0	0	0	0.1939	1	24821	24821		30.637	5.9627	1	164150			32001	2530	18506	18507	39359	39359					0.020220193778186513
PEDVYIVKN	9	Unmodified	_PEDVYIVKN_					0	0	0		nc|ENSG00000113763|Q6ZN44-2|UNC5A;ENSG00000113763|ENST00000329542|UNC5A	nc|ENSG00000113763|Q6ZN44-2|UNC5A	nc|ENSG00000113763|Q6ZN44-2|UNC5A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	538.784764	1075.55498	0.41733	0.00022485	-0.086422	-4.6563E-05	0.33091	0.00017829	539.2848518159967	92.53	0.59562	92.53	92.175	92.77	0	-0.050615	0.00032028	NaN	30.637	69	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133090			32002	2530	18506	18507							0.020220193778186513
PEDVYTDRF	9	Unmodified	_PEDVYTDRF_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.8157348632812	2	571.261653	1140.50875	0.47436	0.00027098	-3.1481	-0.0017984	-2.6737	-0.0015274	571.7616669932926	63.481	0.33867	63.577	63.282	63.621	0.095722					20	11	2	0	0	0	0.2451	1	15667	15667		15.847	1.0089	1	185720			32003	3427	18507	18508	39360	39360					-0.05588045524291374
PEDYEEEE	8	Unmodified	_PEDYEEEE_					0	0	0		nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2;ENST00000464761.1_1_2:204276063-204301494:+|nuORF	nc|ENSG00000138443|Q9NYB9-3|ABI2	nc|ENSG00000138443|Q9NYB9-3|ABI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.1906127929688	2	520.190559	1038.36657	0.52428	0.00027273	-0.51582	-0.00026832	0.008466	4.4039E-06	520.1903189196382	72.615	0.70685	72.615	72.374	73.081	0					50	25	3	0	0	0	0.45942	1	18546	18546		2.5775	2.5775	1	263800			32004	4152	18508	18509	39361	39361					-0.1510830305712716
PEDYEEEE	8	Unmodified	_PEDYEEEE_					0	0	0		nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2;ENST00000464761.1_1_2:204276063-204301494:+|nuORF	nc|ENSG00000138443|Q9NYB9-3|ABI2	nc|ENSG00000138443|Q9NYB9-3|ABI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3328247070312	2	520.190559	1038.36657	0.49194	0.0002559	-0.64863	-0.00033741	-0.15669	-8.1507E-05	520.1901325059615	72.682	0.67709	72.653	72.396	73.073	-0.029305					39	23	2	0	0	0	0.344	1	18584	18584		0.69038	0.69038	1	359480			32005	4152	18508	18509	39362	39362					-0.1510830305712716
PEDYEEEE	8	Unmodified	_PEDYEEEE_					0	0	0		nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2;ENST00000464761.1_1_2:204276063-204301494:+|nuORF	nc|ENSG00000138443|Q9NYB9-3|ABI2	nc|ENSG00000138443|Q9NYB9-3|ABI2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	520.190559	1038.36657	0.46844	0.00024368	-0.67477	-0.00035101	-0.20633	-0.00010733	520.1902987965533	72.588	0.65747	72.642	72.408	73.065	0.053833	0.0050987	-7.9253E-05	NaN	0	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328500			32006	4152	18508	18509							-0.1510830305712716
PEEKKKAKK	9	Unmodified	_PEEKKKAKK_					0	0	0			REV__nc|ENSG00000165732|Q9NR30-2|DDX21	REV__nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.794921875	2	543.337498	1084.66044	0.73097	0.00039716	-0.42569	-0.00023129	0.30528	0.00016587	543.3373480135075	32.544	0.55025	32.544	32.199	32.749	0					46	19	3	0	0	0	0.25938	1	6117	6117		4.3292	2.2695	1	309240	+		32007	17263	18509	18510	39363	39363					0.12149980294066154
PEEQRERAAA	10	Unmodified	_PEEQRERAAA_					0	0	0			REV__HS6ST1|p.R252Afs*70|1|0.57|ENSG00000136720|chr2:128268645-128268646|-/A|frameshift_variant	REV__HS6ST1|p.R252Afs*70|1|0.57|ENSG00000136720|chr2:128268645-128268646|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7887573242188	2	578.788901	1155.56325	0.10631	6.1528E-05	-0.54984	-0.00031824	-0.44354	-0.00025672	578.7882888162139	16.174	0.68737	16.174	15.918	16.606	0					50	23	3	0	0	0	0.37454	1	1276	1276		8.1555	1.0538	1	108620	+		32008	22764	18510	18511	39364	39364					-0.008310336528666085
PEEQRERAAA	10	Unmodified	_PEEQRERAAA_					0	0	0			REV__HS6ST1|p.R252Afs*70|1|0.57|ENSG00000136720|chr2:128268645-128268646|-/A|frameshift_variant	REV__HS6ST1|p.R252Afs*70|1|0.57|ENSG00000136720|chr2:128268645-128268646|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.7885131835938	2	578.788901	1155.56325	0.11146	6.4514E-05	-0.60445	-0.00034985	-0.49298	-0.00028533	578.7883168054213	16.33	0.66564	16.215	15.921	16.586	-0.11434					51	22	3	0	0	0	0.37454	1	1316	1316		8.1555	1.0538	1	118470	+		32009	22764	18510	18511	39365	39365					-0.008310336528666085
PEEQRERAAA	10	Unmodified	_PEEQRERAAA_					0	0	0			REV__HS6ST1|p.R252Afs*70|1|0.57|ENSG00000136720|chr2:128268645-128268646|-/A|frameshift_variant	REV__HS6ST1|p.R252Afs*70|1|0.57|ENSG00000136720|chr2:128268645-128268646|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.7886962890625	2	578.788901	1155.56325	0.17035	9.8596E-05	-0.79698	-0.00046128	-0.62663	-0.00036268	578.788244603879	16.223	0.57612	16.16	15.892	16.468	-0.062532					45	19	3	0	0	0	0.37454	1	1297	1297		8.1555	1.0538	1	123030	+		32010	22764	18510	18511	39366	39366					-0.008310336528666085
PEEQRERAAA	10	Unmodified	_PEEQRERAAA_					0	0	0			REV__HS6ST1|p.R252Afs*70|1|0.57|ENSG00000136720|chr2:128268645-128268646|-/A|frameshift_variant	REV__HS6ST1|p.R252Afs*70|1|0.57|ENSG00000136720|chr2:128268645-128268646|-/A|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	578.788901	1155.56325	0.10631	6.1528E-05	-0.54984	-0.00031824	-0.44354	-0.00025672	578.7882888162139	16.174	0.68737	16.174	15.918	16.606	0	-0.009276	0.00010579	NaN	8.1555	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108620	+		32011	22764	18510	18511							-0.008310336528666085
PEEQRERAAA	10	Unmodified	_PEEQRERAAA_					0	0	0			REV__HS6ST1|p.R252Afs*70|1|0.57|ENSG00000136720|chr2:128268645-128268646|-/A|frameshift_variant	REV__HS6ST1|p.R252Afs*70|1|0.57|ENSG00000136720|chr2:128268645-128268646|-/A|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	578.788901	1155.56325	0.11146	6.4514E-05	-0.60445	-0.00034985	-0.49298	-0.00028533	578.7883168054213	16.33	0.66564	16.215	15.921	16.586	-0.11434	0.032276	4.258E-05	NaN	8.1555	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118470	+		32012	22764	18510	18511							-0.008310336528666085
PEEQRERAAA	10	Unmodified	_PEEQRERAAA_					0	0	0			REV__HS6ST1|p.R252Afs*70|1|0.57|ENSG00000136720|chr2:128268645-128268646|-/A|frameshift_variant	REV__HS6ST1|p.R252Afs*70|1|0.57|ENSG00000136720|chr2:128268645-128268646|-/A|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	578.788901	1155.56325	0.17035	9.8596E-05	-0.79698	-0.00046128	-0.62663	-0.00036268	578.788244603879	16.223	0.57612	16.16	15.892	16.468	-0.062532	-0.023	-0.00018028	NaN	8.1555	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123030	+		32013	22764	18510	18511							-0.008310336528666085
PEERRRVKE	9	Unmodified	_PEERRRVKE_					0	0	0			REV__LARP1|p.F532*|1|0.35|ENSG00000155506|chr5:154802115-154802116|TT/-|frameshift_variant	REV__LARP1|p.F532*|1|0.35|ENSG00000155506|chr5:154802115-154802116|TT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.7809448242188	2	599.836185	1197.65782	0.8371	0.00050212	-2.5089	-0.0015049	-1.6718	-0.0010028	599.8344332189577	54.648	0.42911	54.648	54.462	54.891	0					23	15	2	0	0	0	0.25526	1	12965	12965		7.9102	0	1	315500	+		32014	16700	18511	18512	39367	39367					0.06689524889134191
PEFQNEGPY	9	Unmodified	_PEFQNEGPY_					0	0	0		ENST00000375864.4_1_6:31638624-31639059:+|nuORF	ENST00000375864.4_1_6:31638624-31639059:+|nuORF	ENST00000375864.4_1_6:31638624-31639059:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.30078125	2	540.735271	1079.45599	0.66792	0.00036117	-4.0574	-0.002194	-3.3894	-0.0018328	541.2341342897	86.087	0.34839	86.087	85.876	86.224	0					14	12	2	0	0	0	0.25066	1	22627	22627		11.64	2.2929	1	73387			32015	9913	18512	18513	39368	39368					-0.0805600358708034
PEFRAVGAAL	10	Unmodified	_PEFRAVGAAL_					0	0	0		ENSG00000169884|ENST00000301061|WNT10B	ENSG00000169884|ENST00000301061|WNT10B	ENSG00000169884|ENST00000301061|WNT10B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2481079101562	2	515.787641	1029.56073	0.23545	0.00012144	-0.061106	-3.1518E-05	0.17435	8.9926E-05	515.7877298647086	59.346	0.6541	59.346	58.996	59.65	0					56	22	3	0	0	0	0.27979	1	14407	14407		27.629	1.3607	1	740020			32016	6395	18513	18514	39369	39369					0.04713162680127425
PEGASHTPL	9	Unmodified	_PEGASHTPL_					0	0	0			REV__nc|ENSG00000061337|Q9Y250-6|LZTS1	REV__nc|ENSG00000061337|Q9Y250-6|LZTS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.7280578613281	2	454.727249	907.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.283	1	83.283	82.783	83.783	0								0	0	0	0.21726	1	21781	21781		16.942	1.0951	1		+		32017	22889	18514	18515	39370	39370					-0.01747665033337853
PEGGKWLRG	9	Unmodified	_PEGGKWLRG_					0	0	0			REV__ENST00000485073.5_1_1:6714077-6740988:-|nuORF	REV__ENST00000485073.5_1_1:6714077-6740988:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.67156982421875	2	500.272158	998.529764	0.053599	2.6814E-05	0.24378	0.00012196	0.29738	0.00014877	500.2723031724334	15.261	0.56375	15.196	15.041	15.605	-0.064414					31	18	3	0	0	0	0.25323	1	926	926		10.074	10.074	1	44444	+		32018	21540	18515	18516	39371	39371					0.030440093659080958
PEGGKWLRG	9	Unmodified	_PEGGKWLRG_					0	0	0			REV__ENST00000485073.5_1_1:6714077-6740988:-|nuORF	REV__ENST00000485073.5_1_1:6714077-6740988:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	500.272158	998.529764	0.1431	7.159E-05	0.49936	0.00024982	0.64246	0.00032141	500.2724341294426	15.174	0.39198	15.064	14.955	15.347	-0.10981	-0.03566	0.00018856	NaN	10.074	26	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46426	+		32019	21540	18515	18516							0.030440093659080958
PEGYSSKFQF	10	Unmodified	_PEGYSSKFQF_					0	0	0		ENST00000421674.5_1_15:44177877-44211195:-|nuORF;nc|ENSG00000171877|Q7Z6J6-2|FRMD5;FRMD5|p.D528Tfs*37|1|0.14|ENSG00000171877|chr15:43874017-43874017|A/-|frameshift_variant;ENSG00000171877|ENST00000417257|FRMD5	ENST00000421674.5_1_15:44177877-44211195:-|nuORF	ENST00000421674.5_1_15:44177877-44211195:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8063354492188	2	595.279846	1188.54514	0.49622	0.00029539	-2.1911	-0.0013043	-1.6949	-0.0010089	595.2788563381011	59.004	0.30727	59.095	58.983	59.29	0.091305					16	10	3	0	0	0	0.30079	1	14352	14352		14.838	0	1	248490			32020	6593	18516	18517	39372	39372					-0.04159168627575127
PEHLIIPLN	9	Unmodified	_PEHLIIPLN_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.8106689453125	2	523.305667	1044.59678	0.50641	0.00026501	-1.9394	-0.0010149	-1.433	-0.00074988	523.3031390444871	88.619	0.81602	88.708	88.37	89.186	0.089195					46	34	2	0	0	0	0.2451	1	23334	23334		15.847	2.8047	1	105040	+		32021	17138	18517	18518	39373	39373					0.0762661985700106
PEHLLPVLI	9	Unmodified	_PEHLLPVLI_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.8186645507812	2	515.81841	1029.62227	0.48946	0.00025247	0.13085	6.7494E-05	0.62031	0.00031997	515.8185068846968	65.756	0.59541	65.845	65.628	66.224	0.088882					52	21	3	0	0	0	0.1669	1	16405	16405		28.487	11.545	1	615320			32022	6814	18518	18519	39374	39374					0.10864094379417111
PEHLLPVLI	9	Unmodified	_PEHLLPVLI_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	515.81841	1029.62227	0.59828	0.0003086	0.085121	4.3907E-05	0.6834	0.00035251	515.8185493247903	65.914	0.68433	65.914	65.608	66.292	0	0.031085	-0.00011649	NaN	28.487	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	786010			32023	6814	18518	18519							0.10864094379417111
PEHLLPVLI	9	Unmodified	_PEHLLPVLI_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	515.81841	1029.62227	0.3502	0.00018064	0.32522	0.00016775	0.67541	0.00034839	515.8186010907866	65.9	0.68784	65.888	65.641	66.329	-0.01133	0.0060358	0.0001312	NaN	28.487	48	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	719940			32024	6814	18518	18519							0.10864094379417111
PEINQHNRLL	10	Unmodified	_PEINQHNRLL_					0	0	0			REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.8943786621094	3	411.894799	1232.66257	-0.21319	-8.781E-05	-0.92177	-0.00037967	-1.135	-0.00046748	411.89442953071296	22.473	0.6256	22.473	22.278	22.904	0					58	21	4	0	0	0	0.38284	1	3183	3183		6.6304	0.76223	1	238930	+		32025	15629	18519	18520	39375	39375					0.055544090319017414
PEINQHNRLL	10	Unmodified	_PEINQHNRLL_					0	0	0			REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	411.894799	1232.66257	-0.025982	-1.0702E-05	-0.93811	-0.0003864	-0.96409	-0.0003971	411.89444050295	22.601	0.76871	22.556	22.182	22.951	-0.044867	0.053784	3.4745E-05	NaN	6.6304	61	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223490	+		32026	15629	18519	18520							0.055544090319017414
PEKENEGDITI	11	Unmodified	_PEKENEGDITI_					0	0	0		nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	nc|ENSG00000123473|Q15468|STIL	nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8027954101562	2	622.803882	1243.59321	0.29403	0.00018312	-1.3836	-0.00086169	-1.0895	-0.00067857	622.8029816667113	53.697	0.47376	53.688	53.482	53.956	-0.0096054					39	17	3	0	0	0	0.43508	1	12696	12696		6.6304	1.7334	1	513580			32027	3107	18520	18521	39376	39376					-0.018841394982018755
PEKGQRRGHL	10	Unmodified	_PEKGQRRGHL_					0	0	0		ENST00000373078.4_1_9:130829183-130829456:-|nuORF	ENST00000373078.4_1_9:130829183-130829456:-|nuORF	ENST00000373078.4_1_9:130829183-130829456:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3214721679688	2	589.33107	1176.64759	0.36163	0.00021312	2.654	0.0015641	3.0156	0.0017772	589.3326855432366	38.595	0.48887	38.686	38.483	38.972	0.090881					27	17	2	0	0	0	0.31745	1	8011	8011		8.7454	1.1365	1	251420			32028	9856	18521	18522	39377	39377					0.06632961954574057
PEKKLRRY	8	Unmodified	_PEKKLRRY_					0	0	0		ENSG00000033327|ENST00000361507|GAB2;ENST00000534823.1_1_11:77991605-78128766:-|nuORF;ENST00000530915.1_3_11:78075116-78128823:-|nuORF	ENSG00000033327|ENST00000361507|GAB2	ENSG00000033327|ENST00000361507|GAB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3178100585938	2	545.330008	1088.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.23	1	119.26	118.76	119.76	0.026253								0	0	0	0.38004	1	30847	30847		0.69038	0	1				32029	561	18522	18523	39378	39378					0.10468533216771903
PEKRLGYTK	9	Unmodified	_PEKRLGYTK_					0	0	0			REV__ENST00000496181.1_1_6:167435938-167438429:+|nuORF	REV__ENST00000496181.1_1_6:167435938-167438429:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.7662353515625	2	546.314023	1090.61349	0.37315	0.00020386	-0.32999	-0.00018028	0.043167	2.3583E-05	546.3137720746862	26.785	0.50541	26.785	26.558	27.063	0					23	17	2	0	0	0	0.26188	1	4407	4407		1.6526	0	1	69281	+		32030	19032	18523	18524	39379	39379					0.07181120742939129
PELHFGYLL	9	Unmodified	_PELHFGYLL_					0	0	0			REV__nc|ENSG00000131233|P57773-2|GJA9	REV__nc|ENSG00000131233|P57773-2|GJA9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7916870117188	2	544.792392	1087.57023	0.6196	0.00033755	-0.68657	-0.00037404	-0.066968	-3.6484E-05	544.791636048587	60.392	1.5051	60.487	59.714	61.219	0.095093					118	54	3	0	0	0	0.1669	1	14842	14842		28.487	0	1	4814300	+		32031	15504	18524	18525	39380	39380					0.0299493096565584
PELLLLLSLL	10	Unmodified	_PELLLLLSLL_					0	0	0			REV__nc|ENSG00000113721|P09619-2|PDGFRB	REV__nc|ENSG00000113721|P09619-2|PDGFRB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8047485351562	2	562.370475	1122.7264	-0.95373	-0.00053635	2.6727	0.001503	1.7189	0.00096669	562.8738692526989	34.54	0.13612	34.615	34.549	34.685	0.075302					6	4	2	0	0	0	0.32132	1	6824	6824		1.4819	1.0812	1	67758	+		32032	14818	18525	18526	39381	39381					0.169943764162781
PELLLLLSLL	10	Unmodified	_PELLLLLSLL_					0	0	0			REV__nc|ENSG00000113721|P09619-2|PDGFRB	REV__nc|ENSG00000113721|P09619-2|PDGFRB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	562.370475	1122.7264	-0.27367	-0.0001539	2.4474	0.0013763	2.1737	0.0012224	562.371813800272	34.514	0.10852	34.592	34.505	34.614	0.077377	-0.011849	-0.00010657	NaN	1.4819	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58386	+		32033	14818	18525	18526							0.169943764162781
PELPDDHS	8	Unmodified	_PELPDDHS_					0	0	0			REV__ENST00000595671.5_1_19:57286058-57293785:-|nuORF	REV__ENST00000595671.5_1_19:57286058-57293785:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.24322509765625	2	455.201064	908.387576	-0.15919	-7.2465E-05	-2.7074	-0.0012324	-2.8666	-0.0013049	455.19982450701264	14.94	0.28329	14.875	14.7	14.984	-0.064414					13	9	2	0	0	0	0.344	1	842	842		2.5775	0	1	26120	+		32034	19310	18526	18527	39382	39382					-0.0702824816694374
PELQIERF	8	Unmodified	_PELQIERF_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.819091796875	2	516.279649	1030.54475	0.60661	0.00031318	2.5208	0.0013014	3.1274	0.0016146	516.2799475670415	65.81	0.6066	65.81	65.577	66.183	0					34	21	3	0	0	0	0.014631	1	16448	16448		140.63	40.834	1	227860			32035	1088	18527	18528	39383	39383					0.030694564432451443
PELQIERF	8	Unmodified	_PELQIERF_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.8186645507812	2	516.279649	1030.54475	0.3734	0.00019278	0.1245	6.4278E-05	0.4979	0.00025706	516.2797083730478	65.671	0.37101	65.76	65.576	65.947	0.088882					20	13	2	0	0	0	0.032239	1	16405	16405		110.55	56.72	1	132350			32036	1088	18527	18528	39384	39384					0.030694564432451443
PELQIERF	8	Unmodified	_PELQIERF_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.8189086914062	2	516.279649	1030.54475	0.39178	0.00020227	-0.010798	-5.5747E-06	0.38098	0.00019669	516.279822752456	65.773	0.47986	65.761	65.586	66.066	-0.011337					21	16	2	0	0	0	0.0033047	1	16436	16436		152.89	53.087	1	220660			32037	1088	18527	18528	39385	39385					0.030694564432451443
PELWGYPTF	9	Unmodified	_PELWGYPTF_					0	0	0			REV__ENSG00000156413|ENST00000318336|FUT6	REV__ENSG00000156413|ENST00000318336|FUT6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.7546997070312	2	555.26875	1108.52295	0.34628	0.00019228	0.387	0.00021489	0.73328	0.00040717	555.2687229284417	71.139	1.1939	71.139	70.605	71.799	0					127	42	4	0	0	0	0.25066	1	18177	18177		7.2892	0	1	2545100	+		32038	15454	18528	18529	39386	39386					-0.026973483053552627
PEMRQLQSL	9	Unmodified	_PEMRQLQSL_					0	0	0			REV__ENST00000484975.5_1_20:44472824-44477348:-|nuORF	REV__ENST00000484975.5_1_20:44472824-44477348:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.3012084960938	2	551.289691	1100.56483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.847	1	60.944	60.444	61.444	0.096985								0	0	0	0.19013	1	14901	14901		25.399	0	1		+		32039	14275	18529	18530	39387	39387					0.018568841115666146
PENIMLLDKNV	11	Unmodified	_PENIMLLDKNV_					0	0	0		nc|ENSG00000167657|O43293-2|DAPK3;ENSG00000167657|ENST00000545797|DAPK3	nc|ENSG00000167657|O43293-2|DAPK3	nc|ENSG00000167657|O43293-2|DAPK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.92578125	3	429.232201	1284.67477	-0.11289	-4.8454E-05	-1.3648	-0.00058582	-1.4777	-0.00063427	429.56581490428454	24.788	0.32313	24.732	24.514	24.837	-0.055931					16	10	2	0	0	0	0.3325	1	3870	3870		4.1166	1.2733	1	48174			32040	6195	18530	18531	39388	39388					0.043822646600574444
PENNLDKSLT	10	Unmodified	_PENNLDKSLT_					0	0	0			REV__nc|ENSG00000133863|Q9BXT5|TEX15	REV__nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.300048828125	2	565.788035	1129.56152	0.31484	0.00017813	1.587	0.00089792	1.9019	0.0010761	565.7891030875109	63.25	0.56596	63.241	62.938	63.504	-0.0085526					42	20	3	0	0	0	0.30079	1	15657	15657		14.838	0	1	186080	+		32041	15641	18531	18532	39389	39389					0.001919125385256848
PENVIQLLS	9	Unmodified	_PENVIQLLS_					0	0	0		ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;nc|ENSG00000101158|Q8IXH7-3|NELFCD;ENST00000482747.1_1_20:57556337-57564148:+|nuORF	ENSG00000101158|ENST00000652272|NELFCD	ENSG00000101158|ENST00000652272|NELFCD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2482604980469	2	506.787307	1011.56006	0.29241	0.00014819	-0.013166	-6.6724E-06	0.27925	0.00014152	506.78735365178983	55.275	0.62098	55.275	55.061	55.682	0					45	22	3	0	0	0	0.22674	1	13263	13263		17.113	7.039	1	476530			32042	1668	18532	18533	39390	39390					0.054743232404462105
PENVIQLLS	9	Unmodified	_PENVIQLLS_					0	0	0		ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;nc|ENSG00000101158|Q8IXH7-3|NELFCD;ENST00000482747.1_1_20:57556337-57564148:+|nuORF	ENSG00000101158|ENST00000652272|NELFCD	ENSG00000101158|ENST00000652272|NELFCD	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.787307	1011.56006	0.33846	0.00017153	0.43581	0.00022086	0.77427	0.00039239	506.7876213364385	55.368	0.43679	55.349	55.129	55.565	-0.019081	0.0039409	0.00038839	NaN	17.113	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	448460			32043	1668	18532	18533							0.054743232404462105
PEPGASWKP	9	Unmodified	_PEPGASWKP_					0	0	0			REV__ENST00000557258.5_1_14:89629283-89817036:-|nuORF	REV__ENST00000557258.5_1_14:89629283-89817036:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.78839111328125	2	484.745442	967.476331	0.34242	0.00016599	0.22727	0.00011017	0.56969	0.00027615	484.7456630546538	35.931	0.44968	35.931	35.693	36.142	0					25	16	2	0	0	0	0.2451	1	7270	7270		6.7232	0	1	214520	+		32044	22269	18533	18534	39391	39391					-0.008707881366262882
PEPGASWKP	9	Unmodified	_PEPGASWKP_					0	0	0			REV__ENST00000557258.5_1_14:89629283-89817036:-|nuORF	REV__ENST00000557258.5_1_14:89629283-89817036:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.788330078125	2	484.745442	967.476331	0.33933	0.00016449	-0.057053	-2.7656E-05	0.28228	0.00013683	484.7454957747428	35.822	0.48878	35.904	35.682	36.171	0.082355					28	17	2	0	0	0	0.2451	1	7229	7229		10.824	10.824	1	223400	+		32045	22269	18533	18534	39392	39392					-0.008707881366262882
PEPGASWKP	9	Unmodified	_PEPGASWKP_					0	0	0			REV__ENST00000557258.5_1_14:89629283-89817036:-|nuORF	REV__ENST00000557258.5_1_14:89629283-89817036:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7882995605469	2	484.745442	967.476331	0.35118	0.00017023	0.12001	5.8172E-05	0.47118	0.0002284	484.7453231962039	35.755	0.414	35.841	35.671	36.085	0.08625					23	14	2	0	0	0	0.2451	1	7215	7215		15.847	7.937	1	284190	+		32046	22269	18533	18534	39393	39393					-0.008707881366262882
PEPRPGAPPS	10	Unmodified	_PEPRPGAPPS_					0	0	0			REV__nc|ENSG00000176160|Q4G112-2|HSF5	REV__nc|ENSG00000176160|Q4G112-2|HSF5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.77435302734375	2	502.761623	1003.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.528	1	42.528	42.028	43.028	0								0	0	0	0.35954	1	9264	9264		10.8	2.0541	1		+		32047	23099	18534	18535	39394	39394					0.007079992663761914
PEPSLFSTV	9	Unmodified	_PEPSLFSTV_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1;ENSG00000121297|ENST00000240587|TSHZ3	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.341796875	2	488.752933	975.491313	0.56096	0.00027417	-1.6492	-0.00080605	-1.0882	-0.00053188	488.75216959028864	65.769	0.60665	65.769	65.545	66.152	0					43	21	3	0	0	0	0.23784	1	16386	16386		13.906	3.0821	1	363210			32048	7161	18535	18536	39395	39395					0.002586589407314932
PEQLRQVL	8	Unmodified	_PEQLRQVL_					0	0	0		ENSG00000022976|ENST00000442396|ZNF839	ENSG00000022976|ENST00000442396|ZNF839	ENSG00000022976|ENST00000442396|ZNF839	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.8057556152344	2	491.787641	981.56073	0.35246	0.00017334	0.72563	0.00035686	1.0781	0.00053019	491.7880572983905	23.446	0.36452	23.401	23.249	23.614	-0.044867					21	12	2	0	0	0	0.34131	1	3443	3443		12.532	0	1	59697			32049	517	18536	18537	39396	39396					0.06921162680123416
PEQPVRHYPL	10	Unmodified	_PEQPVRHYPL_					0	0	0		MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant;MGA|p.R2396Qfs*8|1|0.14|ENSG00000174197|chr15:41757835-41757835|G/-|frameshift_variant;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA	MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant	MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2722473144531	3	412.555895	1234.64586	0.25463	0.00010505	-0.055189	-2.2768E-05	0.19944	8.2281E-05	412.89022173316795	39.945	0.71766	40.044	39.788	40.505	0.099403					47	25	3	0	0	0	0.32068	1	8566	8566		0.62683	0	1	327100			32050	6777	18537	18538	39397	39397					0.03791908145967682
PEQVENLMI	9	Unmodified	_PEQVENLMI_					0	0	0			REV__ENST00000373202.7_1_10:72639263-72639515:+|nuORF	REV__ENST00000373202.7_1_10:72639263-72639515:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.28076171875	2	536.7708	1071.52705	0.37417	0.00020084	1.1223	0.00060239	1.4964	0.00080323	536.7717292771191	75.552	0.16588	75.605	75.48	75.646	0.052361					7	5	2	0	0	0	0.21905	1	19409	19409		23.148	0	1	362330	+		32051	20430	18538	18539	39398	39398					-0.0058562687393077795
PERDKQLLF	9	Unmodified	_PERDKQLLF_					0	0	0		FOXJ3|p.S307Hfs*7|1|0.14|ENSG00000198815|chr1:42194905-42194905|A/-|frameshift_variant;nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3	FOXJ3|p.S307Hfs*7|1|0.14|ENSG00000198815|chr1:42194905-42194905|A/-|frameshift_variant	FOXJ3|p.S307Hfs*7|1|0.14|ENSG00000198815|chr1:42194905-42194905|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.7257080078125	2	573.319306	1144.62406	0.76784	0.00044022	-1.3696	-0.00078523	-0.60178	-0.00034501	573.3183927623853	60.624	0.42116	60.721	60.528	60.949	0.096985					30	14	3	0	0	0	0.1854	1	14851	14851		25.399	0	1	461990			32052	8132	18539	18540	39399	39399					0.05753103397364612
PERDSRFSQ	9	Unmodified	_PERDSRFSQ_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.288818359375	2	561.270344	1120.52613	0.15584	8.7471E-05	0.42575	0.00023896	0.5816	0.00032643	561.2706447927292	17.391	0.30254	17.273	17.053	17.355	-0.11739					14	10	2	0	0	0	0.26612	1	1590	1590		13.906	1.6654	1	40587			32053	4462	18540	18541	39400	39400					-0.029307051986279475
PERGTVVVM	9	Unmodified	_PERGTVVVM_					0	0	0			REV__ENSG00000243335|ENST00000639828|KCTD7	REV__ENSG00000243335|ENST00000639828|KCTD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2961120605469	2	494.268227	986.521901	0.66025	0.00032634	-1.8854	-0.00093191	-1.2252	-0.00060557	494.26702036816346	47.705	0.39382	47.749	47.43	47.824	0.04332					22	14	3	0	0	0	0.2451	1	10772	10772		6.7232	0	1	236740	+		32054	19192	18541	18542	39401	39401					0.028101140541139102
PERKSGVA	8	Unmodified	_PERKSGVA_					0	0	0		ENST00000448157.6_1_12:57081843-57081930:-|nuORF	ENST00000448157.6_1_12:57081843-57081930:-|nuORF	ENST00000448157.6_1_12:57081843-57081930:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.2385559082031	2	422.237784	842.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.088	1	76.141	75.641	76.641	0.053413								0	0	0	0.35663	1	19572	19572		11.64	1.4569	1				32055	10612	18542	18543	39402	39402					0.033483450661947245
PERNNRNQ	8	Unmodified	_PERNNRNQ_					0	0	0		ENST00000453861.6_1_9:134105178-134109025:+|nuORF;ENST00000359428.9_2_9:134098272-134109028:+|nuORF	ENST00000453861.6_1_9:134105178-134109025:+|nuORF	ENST00000453861.6_1_9:134105178-134109025:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2562866210938	2	514.255028	1026.4955	0.39806	0.00020471	0.29093	0.00014961	0.68899	0.00035432	514.2553049667277	82.163	1.6338	82.163	81.87	83.504	0					207	61	7	0	0	0	0.44389	1	21776	21776		7.9102	2.1497	1	8258700			32056	9664	18543	18544	39403	39403					-0.01668438793012683
PERRHFHQ	8	Unmodified	_PERRHFHQ_					0	0	0			REV__ENST00000532294.1_1_6:26370772-26373525:+|nuORF	REV__ENST00000532294.1_1_6:26370772-26373525:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.7845458984375	2	553.783756	1105.55296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.856	1	20.856	20.356	21.356	0								0	0	0	0.37724	1	2665	2665		2.3027	0.24298	1		+		32057	22032	18544	18545	39404	39404					0.004404482032214219
PERRRKLEK	9	Unmodified	_PERRRKLEK_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D;ENST00000574510.1_1_17:7919510-7919845:+|nuORF	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3701782226562	2	606.370195	1210.72584	0.54971	0.00033333	-0.35687	-0.00021639	0.19284	0.00011693	606.3698124394905	86.859	2.3907	86.946	86.728	89.119	0.08709					235	111	4	0	0	0	0.35734	1	23476	23476		0	0	1	1359800			32058	3644	18545	18546	39405	39405					0.12890394539772387
PERVPAPPF	9	Unmodified	_PERVPAPPF_					0	0	0			REV__chr11:2397189-2397252|128|213.52|0.0|24.35|+|1|None,CD81|1	REV__chr11:2397189-2397252|128|213.52|0.0|24.35|+|1|None,CD81|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.82135009765625	2	505.276909	1008.53927	0.66906	0.00033806	-0.4399	-0.00022227	0.22916	0.00011579	505.27652012369487	56.02	1.0497	56.02	55.374	56.423	0					75	37	3	0	0	0	0.2322	1	13326	13326		14.838	0	1	693290	+		32059	13173	18546	18547	39406	39406					0.03533777651421133
PESTRGQQRE	10	Unmodified	_PESTRGQQRE_					0	0	0			REV__nc|ENSG00000103168|Q15572-2|TAF1C	REV__nc|ENSG00000103168|Q15572-2|TAF1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7353515625	2	594.291808	1186.56906	0.79199	0.00047067	3.8621	0.0022952	4.6541	0.0027659	594.294266337995	60.896	0.48039	60.887	60.487	60.968	-0.0094566					39	17	3	0	0	0	0.31039	1	14915	14915		8.7454	0	1	544220	+		32060	14357	18547	18548	39407	39407					-0.016759351412019896
PETERGPVYG	10	Unmodified	_PETERGPVYG_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.779052734375	2	552.769645	1103.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.361	1	40.454	39.954	40.954	0.09267								0	0	0	0.35216	1	8601	8601		13.906	0.86358	1		+		32061	18995	18548	18549	39408	39408					-0.022883392873836783
PETKRLKA	8	Unmodified	_PETKRLKA_					0	0	0		ENST00000255641.12_1_19:1980781-1981270:+|nuORF	ENST00000255641.12_1_19:1980781-1981270:+|nuORF	ENST00000255641.12_1_19:1980781-1981270:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.7796936035156	2	471.790184	941.565815	-0.18404	-8.6827E-05	-0.87409	-0.00041239	-1.0581	-0.00049921	471.7900060858755	13.087	0.25744	13.019	12.905	13.162	-0.067495					15	8	3	0	0	0	0.46461	1	343	343		0.79363	0	1	22183			32062	8924	18549	18550	39409	39409					0.0926946654275298
PETLGRLLI	9	Unmodified	_PETLGRLLI_					0	0	0		SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant;SEC14L1|p.V620Efs*51|1|0.16|ENSG00000129657|chr17:77212192-77212193|-/TCTGAAAAAG|frameshift_variant;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.31353759765625	2	506.313492	1010.61243	0.4533	0.00022951	-0.3695	-0.00018708	0.083796	4.2427E-05	506.3132678285592	57.29	0.66785	57.29	56.937	57.605	0					58	24	4	0	0	0	0.24467	1	13880	13880		17.113	0.1706	1	1748800			32063	3434	18550	18551	39410	39410					0.10754906374052098
PETLGRLLI	9	Unmodified	_PETLGRLLI_					0	0	0		SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant;SEC14L1|p.V620Efs*51|1|0.16|ENSG00000129657|chr17:77212192-77212193|-/TCTGAAAAAG|frameshift_variant;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.31365966796875	2	506.313492	1010.61243	0.3249	0.0001645	-0.28989	-0.00014678	0.035002	1.7722E-05	506.31338761478105	67.868	0.50323	67.868	67.647	68.15	0					29	17	3	0	0	0	0.21538	1	17059	17059		20.415	0	1	289570			32064	3434	18550	18551	39411	39411					0.10754906374052098
PETLGRLLI	9	Unmodified	_PETLGRLLI_					0	0	0		SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant;SEC14L1|p.V620Efs*51|1|0.16|ENSG00000129657|chr17:77212192-77212193|-/TCTGAAAAAG|frameshift_variant;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.31341552734375	2	506.313492	1010.61243	0.27519	0.00013933	-0.32498	-0.00016454	-0.049787	-2.5208E-05	506.31336704955885	67.865	0.53241	67.848	67.618	68.151	-0.016296					37	18	3	0	0	0	0.24289	1	17072	17072		18.146	5.1039	1	296560			32065	3434	18550	18551	39412	39412					0.10754906374052098
PETPWTHIFY	10	Unmodified	_PETPWTHIFY_					0	0	0		ENST00000551915.5_1_12:83081308-83379891:+|nuORF;TMTC2|p.A737Qfs*4|1|0.28|ENSG00000179104|chr12:83050953-83050953|A/-|frameshift_variant;ENSG00000179104|ENST00000321196|TMTC2	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	645.8081665039062	2	645.811313	1289.60807	-0.037275	-2.4073E-05	-3.6776	-0.002375	-3.7149	-0.0023991	645.8088389637127	12.916	0.14523	12.849	12.791	12.936	-0.067496					6	4	2	0	0	0	0.41673	1	288	288		0.40072	0.050084	1	14506			32066	7102	18551	18552	39413	39413					-0.025146028395283793
PETPWTHIFY	10	Unmodified	_PETPWTHIFY_					0	0	0		ENST00000551915.5_1_12:83081308-83379891:+|nuORF;TMTC2|p.A737Qfs*4|1|0.28|ENSG00000179104|chr12:83050953-83050953|A/-|frameshift_variant;ENSG00000179104|ENST00000321196|TMTC2	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	ENST00000551915.5_1_12:83081308-83379891:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	645.811313	1289.60807	0.083475	5.3909E-05	-2.9757	-0.0019217	-2.8922	-0.0018678	645.8090990817971	12.899	0.16914	12.899	12.783	12.952	0	0.025275	0.00019736	NaN	0.40072	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16357			32067	7102	18551	18552							-0.025146028395283793
PEVHQKLQE	9	Unmodified	_PEVHQKLQE_					0	0	0			REV__nc|ENSG00000109572|P51790-2|CLCN3	REV__nc|ENSG00000109572|P51790-2|CLCN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2796020507812	2	554.293288	1106.57202	0.28763	0.00015943	-0.28211	-0.00015637	0.0055176	3.0584E-06	554.2931872514632	17.525	0.39322	17.525	17.296	17.69	0					28	13	3	0	0	0	0.33508	1	1679	1679		3.5965	1.2938	1	78011	+		32068	22936	18552	18553	39414	39414					0.022999399836407974
PEVISLHPGYM	11	Unmodified	_PEVISLHPGYM_					0	0	0		ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.81396484375	2	621.812999	1241.61144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.55	1	104.55	104.05	105.05	0								0	0	0	0.37252	1	27754	27754		3.2813	0.28607	1				32069	2827	18553	18554	39415	39415					0.00030323942814902693
PEVIVEPI	8	Unmodified	_PEVIVEPI_					0	0	0		ENSG00000112981|ENST00000265191|NME5	ENSG00000112981|ENST00000265191|NME5	ENSG00000112981|ENST00000265191|NME5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.2610778808594	2	448.260394	894.506234	0.24428	0.0001095	0.078101	3.501E-05	0.32239	0.00014451	448.260335076757	62.738	1.0985	62.834	62.44	63.539	0.095726					112	39	5	0	0	0	0.43043	1	15605	15605		12.532	0.89125	1	4282200			32070	2467	18554	18555	39416	39416					0.05476150808715374
PEVKRALL	8	Unmodified	_PEVKRALL_					0	0	0			REV__ENST00000441215.2_1_17:20628988-20639084:+|nuORF	REV__ENST00000441215.2_1_17:20628988-20639084:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.29498291015625	2	463.295102	924.575651	0.73343	0.00033979	-0.64967	-0.00030099	0.083756	3.8804E-05	463.2947038123239	56.183	0.50237	56.164	55.824	56.326	-0.019077					27	17	2	0	0	0	0.39068	1	13465	13465		20.454	3.5113	1	538140	+		32071	14594	18555	18556	39417	39417					0.11034654548143408
PEVKRALL	8	Unmodified	_PEVKRALL_					0	0	0			REV__ENST00000441215.2_1_17:20628988-20639084:+|nuORF	REV__ENST00000441215.2_1_17:20628988-20639084:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	463.295102	924.575651	0.72305	0.00033498	-0.8833	-0.00040923	-0.16025	-7.4243E-05	463.2945368491534	56.024	0.28118	56.024	55.82	56.101	0	-0.069859	-0.00013161	NaN	20.454	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	603250	+		32072	14594	18555	18556							0.11034654548143408
PEVKRALL	8	Unmodified	_PEVKRALL_					0	0	0			REV__ENST00000441215.2_1_17:20628988-20639084:+|nuORF	REV__ENST00000441215.2_1_17:20628988-20639084:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	463.295102	924.575651	0.73343	0.00033979	-0.64967	-0.00030099	0.083756	3.8804E-05	463.2947038123239	56.183	0.50237	56.164	55.824	56.326	-0.019077	0.069859	8.4864E-05	NaN	20.454	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	538140	+		32073	14594	18555	18556							0.11034654548143408
PEVPKELEP	9	Unmodified	_PEVPKELEP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.3214721679688	2	519.279315	1036.54408	0.50947	0.00026456	0.27928	0.00014503	0.78875	0.00040958	519.2793514046926	57.443	0.71212	57.443	57.116	57.828	0					56	25	4	0	0	0	0.24289	1	13911	13911		18.146	3.3081	1	776010			32074	5186	18556	18557	39418	39418					0.027266170035318282
PEVPTPLLAP	10	Unmodified	_PEVPTPLLAP_					0	0	0			REV__nc|ENSG00000076344|O94810-3|RGS11	REV__nc|ENSG00000076344|O94810-3|RGS11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2838134765625	2	517.30005	1032.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.032	1	81.032	80.532	81.532	0								0	0	0	0.32814	1	21089	21089		24.021	0	1		+		32075	13827	18557	18558	39419	39419					0.07055797762859584
PEVPTPLLAP	10	Unmodified	_PEVPTPLLAP_					0	0	0			REV__nc|ENSG00000076344|O94810-3|RGS11	REV__nc|ENSG00000076344|O94810-3|RGS11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.28369140625	2	517.30005	1032.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.951	1	81.016	80.516	81.516	0.065094								0	0	0	0.32814	1	21054	21054		24.021	5.8742	1		+		32076	13827	18557	18558	39420	39420					0.07055797762859584
PEVREGEKKT	10	Unmodified	_PEVREGEKKT_					0	0	0			REV__ENST00000436565.2_1_13:77559420-77559855:+|nuORF	REV__ENST00000436565.2_1_13:77559420-77559855:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8341674804688	2	586.817127	1171.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.384	1	81.453	80.953	81.953	0.068993								0	0	0	0.36581	1	21188	21188		8.1555	0	1		+		32077	21009	18558	18559	39421	39421					0.04075594183791509
PEVSVPMTRN	10	Unmodified	_PEVSVPMTRN_					0	0	0		ENST00000535804.1_1_12:6637788-6638275:+|nuORF	ENST00000535804.1_1_12:6637788-6638275:+|nuORF	ENST00000535804.1_1_12:6637788-6638275:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.3001708984375	2	565.287148	1128.55974	0.31807	0.0001798	0.63588	0.00035946	0.95395	0.00053926	565.2874364112679	63.365	0.21809	63.365	63.256	63.474	0					15	7	3	0	0	0	0.30093	1	15660	15660		16.149	10.417	1	248600			32078	11676	18559	18560	39422	39422					0.0006058024894173286
PEVSVPMTRN	10	Unmodified	_PEVSVPMTRN_					0	0	0		ENST00000535804.1_1_12:6637788-6638275:+|nuORF	ENST00000535804.1_1_12:6637788-6638275:+|nuORF	ENST00000535804.1_1_12:6637788-6638275:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.300048828125	2	565.287148	1128.55974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.147	1	63.243	62.743	63.743	0.095722								0	0	0	0.34683	1	15615	15615		16.149	2.2431	1				32079	11676	18559	18560	39423	39423					0.0006058024894173286
PEVWACILFM	10	Unmodified	_PEVWACILFM_					0	0	0		ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENST00000587811.1_1_19:14593203-14593794:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.2672119140625	2	604.795763	1207.57697	0.57788	0.0003495	1.5535	0.00093953	2.1314	0.001289	604.7964462909403	37.623	0.43149	37.71	37.442	37.873	0.08741					24	15	2	0	0	0	0.31691	1	7786	7786		9.3831	1.473	1	109920			32080	12135	18560	18561	39424	39424					-0.018512154696509242
PEVWACILFM	10	Unmodified	_PEVWACILFM_					0	0	0		ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENST00000587811.1_1_19:14593203-14593794:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.2671508789062	2	604.795763	1207.57697	0.35637	0.00021553	2.2209	0.0013432	2.5773	0.0015587	604.7967189910294	37.513	0.42798	37.606	37.363	37.791	0.093014					24	15	2	0	0	0	0.31629	1	7748	7748		10.074	6.7926	1	131880			32081	12135	18560	18561	39425	39425					-0.018512154696509242
PEWRVAIIVLS	11	Unmodified	_PEWRVAIIVLS_					0	0	0			REV__ENST00000308275.7_2_15:76222248-76222314:+|nuORF	REV__ENST00000308275.7_2_15:76222248-76222314:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8817138671875	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.13	1	118.13	117.63	118.63	0								0	0	0	0.38114	1	30527	30527		1.3295	0.13619	1		+		32082	19878	18561	18562	39426	39426					0.11490511390979918
PEWRVAIIVLS	11	Unmodified	_PEWRVAIIVLS_					0	0	0			REV__ENST00000308275.7_2_15:76222248-76222314:+|nuORF	REV__ENST00000308275.7_2_15:76222248-76222314:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8818359375	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.76	1	115.78	115.28	116.28	0.018738								0	0	0	0.38114	1	30060	30060		1.3295	0.13619	1		+		32083	19878	18561	18562	39427	39427					0.11490511390979918
PEWRVAIIVLS	11	Unmodified	_PEWRVAIIVLS_					0	0	0			REV__ENST00000308275.7_2_15:76222248-76222314:+|nuORF	REV__ENST00000308275.7_2_15:76222248-76222314:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8819580078125	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.82	1	116.84	116.34	117.34	0.020988								0	0	0	0.38114	1	30301	30301		1.3295	0.13619	1		+		32084	19878	18561	18562	39428	39428					0.11490511390979918
PEYKNGFNTLV	11	Unmodified	_PEYKNGFNTLV_					0	0	0		ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.85498046875	2	641.327328	1280.6401	0.51663	0.00033133	0.32893	0.00021095	0.84556	0.00054228	641.3274335143033	58.957	0.41874	59.048	58.792	59.211	0.091301					15	14	2	0	0	0	0.32855	1	14355	14355		10.8	4.5937	1	134630			32085	1873	18562	18563	39429	39429					0.011007648436134332
PFAFQKVID	9	Unmodified	_PFAFQKVID_					0	0	0		ENST00000484977.1_1_7:1197216-1197866:-|nuORF	ENST00000484977.1_1_7:1197216-1197866:-|nuORF	ENST00000484977.1_1_7:1197216-1197866:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7759399414062	2	532.792392	1063.57023	0.62726	0.0003342	0.037196	1.9818E-05	0.66445	0.00035402	532.7927760262585	40.318	0.66565	40.318	39.996	40.662	0					48	23	3	0	0	0	0.23775	1	8675	8675		18.135	4.2289	1	596610			32086	11082	18563	18564	39430	39430					0.04098930965665204
PFAFQKVID	9	Unmodified	_PFAFQKVID_					0	0	0		ENST00000484977.1_1_7:1197216-1197866:-|nuORF	ENST00000484977.1_1_7:1197216-1197866:-|nuORF	ENST00000484977.1_1_7:1197216-1197866:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7759399414062	2	532.792392	1063.57023	0.58928	0.00031397	0.15345	8.1756E-05	0.74273	0.00039572	532.7926571180017	40.138	0.80604	40.231	39.887	40.693	0.09267					41	28	2	0	0	0	0.23775	1	8633	8633		18.135	6.4947	1	611860			32087	11082	18563	18564	39431	39431					0.04098930965665204
PFAGKRPAP	9	Unmodified	_PFAGKRPAP_					0	0	0			REV__ENST00000204615.11_1_3:184090388-184093318:-|nuORF	REV__ENST00000204615.11_1_3:184090388-184093318:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.7606201171875	2	470.771794	939.529036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.469	1	66.552	66.052	67.052	0.083832								0	0	0	0.23091	1	16631	16631		12.532	1.4171	1		+		32088	19398	18564	18565	39432	39432					0.056852147168342526
PFAKPLPTF	9	Unmodified	_PFAKPLPTF_					0	0	0		nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400	nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7715759277344	2	509.292028	1016.5695	0.52808	0.00026895	-0.75062	-0.00038228	-0.22253	-0.00011334	509.2918519106427	55.736	0.75159	55.736	55.35	56.101	0					40	24	3	0	0	0	0.0069488	1	13325	13325		96.111	77.976	1	625500			32089	7371	18565	18566	39433	39433					0.06188136316609416
PFAKPLPTF	9	Unmodified	_PFAKPLPTF_					0	0	0		nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400	nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.29229736328125	2	509.292028	1016.5695	0.54476	0.00027744	-0.78102	-0.00039777	-0.23625	-0.00012032	509.2920120510956	55.579	0.73836	55.65	55.371	56.109	0.070885					39	24	3	0	0	0	0.0020732	1	13291	13291		114.65	84.424	1	666780			32090	7371	18565	18566	39434	39434					0.06188136316609416
PFAKPLPTF	9	Unmodified	_PFAKPLPTF_					0	0	0		nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400	nc|ENSG00000183495|Q96L91-4|EP400	nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.2921142578125	2	509.292028	1016.5695	0.52892	0.00026937	-1.1199	-0.00057036	-0.59098	-0.00030098	509.2917886233492	55.828	0.7511	55.809	55.408	56.159	-0.019077					34	27	2	0	0	0	2.8439E-05	1	13320	13320		152.41	106.39	1	530360			32091	7371	18565	18566	39435	39435					0.06188136316609416
PFAPAIQTF	9	Unmodified	_PFAPAIQTF_					0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2661437988281	2	496.26601	990.517468	0.43225	0.00021451	-0.02477	-1.2293E-05	0.40748	0.00020222	496.26592892343393	68.914	1.0813	68.914	68.592	69.673	0					82	38	4	0	0	0	0.012929	2	17384	17384;17436		74.929	34.972	1	1068100			32092	7276	18566	18567	39436;39437	39436					0.021829729028468137
PFAPAIQTF	9	Unmodified	_PFAPAIQTF_					0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.26605224609375	2	496.26601	990.517468	0.49012	0.00024323	-0.058134	-2.885E-05	0.43198	0.00021438	496.26586600912094	68.852	0.87692	68.924	68.677	69.554	0.071938					84	31	4	0	0	0	0.012929	2	17360	17360;17411		74.929	34.972	1	1122100			32093	7276	18566	18567	39438;39439	39438					0.021829729028468137
PFAPAIQTF	9	Unmodified	_PFAPAIQTF_					0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.26611328125	2	496.26601	990.517468	0.35656	0.00017695	0.07822	3.8818E-05	0.43478	0.00021577	496.26594986859135	68.951	0.86574	68.932	68.652	69.518	-0.019157					76	30	4	0	0	0	0.006189	2	17375	17375;17450		85.272	45.315	1	1110400			32094	7276	18566	18567	39440;39441	39440					0.021829729028468137
PFAPGSARLL	10	Unmodified	_PFAPGSARLL_					0	0	0		ENST00000558512.5_2_15:60770923-60771109:-|nuORF	ENST00000558512.5_2_15:60770923-60771109:-|nuORF	ENST00000558512.5_2_15:60770923-60771109:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.3101196289062	2	514.798009	1027.58147	0.53433	0.00027507	0.38251	0.00019692	0.91684	0.00047199	514.798064481449	53.695	0.3678	53.695	53.516	53.884	0					17	13	2	0	0	0	0.34325	1	12705	12705		13.906	0.86358	1	220300			32095	11875	18567	18568	39442	39442					0.06877753059779934
PFAPGSARLL	10	Unmodified	_PFAPGSARLL_					0	0	0		ENST00000558512.5_2_15:60770923-60771109:-|nuORF	ENST00000558512.5_2_15:60770923-60771109:-|nuORF	ENST00000558512.5_2_15:60770923-60771109:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.3099975585938	2	514.798009	1027.58147	0.31494	0.00016213	0.66781	0.00034379	0.98275	0.00050592	514.7982427851178	53.779	0.56428	53.769	53.585	54.149	-0.0096054					26	20	2	0	0	0	0.36002	1	12765	12765		10.824	1.4408	1	212440			32096	11875	18567	18568	39443	39443					0.06877753059779934
PFAPGSARLL	10	Unmodified	_PFAPGSARLL_					0	0	0		ENST00000558512.5_2_15:60770923-60771109:-|nuORF	ENST00000558512.5_2_15:60770923-60771109:-|nuORF	ENST00000558512.5_2_15:60770923-60771109:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	514.798009	1027.58147	0.53433	0.00027507	0.38251	0.00019692	0.91684	0.00047199	514.798064481449	53.695	0.3678	53.695	53.516	53.884	0	-0.037212	-0.00018919	NaN	13.906	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220300			32097	11875	18567	18568							0.06877753059779934
PFAPGSARLL	10	Unmodified	_PFAPGSARLL_					0	0	0		ENST00000558512.5_2_15:60770923-60771109:-|nuORF	ENST00000558512.5_2_15:60770923-60771109:-|nuORF	ENST00000558512.5_2_15:60770923-60771109:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	514.798009	1027.58147	0.31494	0.00016213	0.66781	0.00034379	0.98275	0.00050592	514.7982427851178	53.779	0.56428	53.769	53.585	54.149	-0.0096054	0.037212	0.00010455	NaN	13.906	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212440			32098	11875	18567	18568							0.06877753059779934
PFAPIVLPSF	10	Unmodified	_PFAPIVLPSF_					0	0	0			REV__nc|ENSG00000196843|Q03989-5|ARID5A	REV__nc|ENSG00000196843|Q03989-5|ARID5A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3004150390625	2	544.312961	1086.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.912	1	64.901	64.401	65.401	-0.011337								0	0	0	0.33021	1	16151	16151		23.148	2.6948	1		+		32099	18689	18568	18569	39444	39444					0.07152692005115568
PFARDVLVL	9	Unmodified	_PFARDVLVL_					0	0	0		ENST00000359904.7_1_17:66244441-66244810:+|nuORF	ENST00000359904.7_1_17:66244441-66244810:+|nuORF	ENST00000359904.7_1_17:66244441-66244810:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.3084106445312	2	515.30821	1028.60187	0.12625	6.5056E-05	0.6993	0.00036036	0.82555	0.00042541	515.3084495952173	73.786	0.81652	73.786	73.441	74.258	0					48	27	2	0	0	0	0.23007	1	18864	18864		19.257	1.122	1	500060			32100	9670	18569	18570	39445	39445					0.08870923719587154
PFARDVLVL	9	Unmodified	_PFARDVLVL_					0	0	0		ENST00000359904.7_1_17:66244441-66244810:+|nuORF	ENST00000359904.7_1_17:66244441-66244810:+|nuORF	ENST00000359904.7_1_17:66244441-66244810:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3084716796875	2	515.30821	1028.60187	0.15845	8.165E-05	0.46268	0.00023842	0.62113	0.00032007	515.3083556913083	73.806	0.7305	73.858	73.445	74.176	0.052361					49	25	3	0	0	0	0.18803	1	18850	18850		25.399	6.1423	1	534120			32101	9670	18569	18570	39446	39446					0.08870923719587154
PFARDVLVL	9	Unmodified	_PFARDVLVL_					0	0	0		ENST00000359904.7_1_17:66244441-66244810:+|nuORF	ENST00000359904.7_1_17:66244441-66244810:+|nuORF	ENST00000359904.7_1_17:66244441-66244810:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.30859375	2	515.30821	1028.60187	0.13369	6.8893E-05	0.51756	0.0002667	0.65126	0.0003356	515.3085333570273	73.881	1.1205	73.851	73.237	74.358	-0.030655					60	40	3	0	0	0	0.26612	1	18874	18874		13.906	0.86358	1	523020			32102	9670	18569	18570	39447	39447					0.08870923719587154
PFARDVLVL	9	Unmodified	_PFARDVLVL_					0	0	0		ENST00000359904.7_1_17:66244441-66244810:+|nuORF	ENST00000359904.7_1_17:66244441-66244810:+|nuORF	ENST00000359904.7_1_17:66244441-66244810:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	515.30821	1028.60187	0.15845	8.165E-05	0.46268	0.00023842	0.62113	0.00032007	515.3083556913083	73.806	0.7305	73.858	73.445	74.176	0.052361	0.026647	-9.5173E-05	NaN	25.399	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	534120			32103	9670	18569	18570							0.08870923719587154
PFATTGSFEF	10	Unmodified	_PFATTGSFEF_					0	0	0			REV__LTR2752_dup121|chr7:135263151-135264133:-|1.6065116481286288|0.0665708146513393|4.59|523.0|13|2|sense	REV__LTR2752_dup121|chr7:135263151-135264133:-|1.6065116481286288|0.0665708146513393|4.59|523.0|13|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.80615234375	2	552.25584	1102.49713	0.54033	0.0002984	-0.56726	-0.00031327	-0.026925	-1.4869E-05	552.2554480373996	63.934	0.62569	64.027	63.765	64.391	0.09288					41	22	3	0	0	0	0.31165	1	15943	15943		10.824	0	1	440580	+		32104	22843	18570	18571	39448	39448					-0.050022425476072385
PFCCQDDLI	9	Unmodified	_PFCCQDDLI_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2236328125	2	527.222628	1052.4307	1.053	0.00055517	0.87742	0.00046259	1.9304	0.0010178	527.2234282968342	55.848	0.59342	55.848	55.564	56.158	0					63	20	4	0	0	0	0.21303	2	13381	13381;13430		21.747	4.7327	1	2953200	+		32105	14066	18571	18572	39449;39450	39449					-0.09341517705524893
PFCCQDDLI	9	Unmodified	_PFCCQDDLI_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2239379882812	2	527.222628	1052.4307	0.9037	0.00047645	0.77241	0.00040723	1.6761	0.00088368	527.2234770344677	55.909	0.64761	55.89	55.565	56.213	-0.019077					74	23	5	0	0	0	0.1669	1	13366	13366		28.487	5.7506	1	3330300	+		32106	14066	18571	18572	39451	39451					-0.09341517705524893
PFCHLLLLM	9	Unmodified	_PFCHLLLLM_					0	0	0			REV__ENST00000509376.5_1_4:52779756-52779993:+|nuORF	REV__ENST00000509376.5_1_4:52779756-52779993:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.282958984375	2	543.795566	1085.57658	0.60458	0.00032877	1.2129	0.00065956	1.8175	0.00098832	544.2979118711129	29.458	0.3241	29.47	29.361	29.685	0.012266					12	10	2	0	0	0	0.26117	1	5321	5321		2.3027	0.24298	1	54510	+		32107	21788	18572	18573	39452	39452					0.0372140960116667
PFDHSRVI	8	Unmodified	_PFDHSRVI_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;nc|ENSG00000111679|P29350-2|PTPN6;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8003234863281	2	485.758884	969.503215	0.42331	0.00020563	0.97405	0.00047315	1.3974	0.00067878	485.7590372849901	44.397	0.43776	44.466	44.274	44.711	0.068569					24	15	2	0	0	0	0.2026	1	9832	9832		53.833	13.875	1	162300			32108	10317	18573	18574	39453	39453					0.017243204745682306
PFDKMATLL	9	Unmodified	_PFDKMATLL_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3172607421875	2	518.280803	1034.54705	0.61197	0.00031717	-3.2821	-0.0017011	-2.6701	-0.0013839	518.2795685703211	78.909	0.59448	78.879	78.63	79.225	-0.030434					53	24	3	0	0	0	0.24739	1	20379	20379		4.756	0.81161	1	146170			32109	7899	18574	18575	39454	39454					0.03116168856695367
PFEAPFLFFL	10	Unmodified	_PFEAPFLFFL_					0	0	0			REV__ENST00000393596.2_1_11:72929675-72939161:+|nuORF	REV__ENST00000393596.2_1_11:72929675-72939161:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.23236083984375	3	409.886471	1226.63758	-0.027918	-1.1443E-05	2.7489	0.0011267	2.721	0.0011153	409.88741664709227	26.432	0.38926	26.394	26.1	26.489	-0.038671					20	13	2	0	0	0	0.3641	1	4324	4324		8.9762	3.1928	1	71316	+		32110	20606	18575	18576	39455	39455					0.03332961176602112
PFEAREDL	8	Unmodified	_PFEAREDL_					0	0	0		ENST00000578730.1_1_4:1243843-1244044:+|nuORF;ENST00000507044.1_1_4:1243264-1244044:+|nuORF	ENST00000578730.1_1_4:1243843-1244044:+|nuORF	ENST00000578730.1_1_4:1243843-1244044:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.26416015625	2	488.740357	975.46616	0.36959	0.00018063	0.18918	9.246E-05	0.55877	0.00027309	488.7402566237392	52.431	0.26861	52.481	52.363	52.632	0.050575					12	9	2	0	0	0	0.32435	1	12304	12304		23.148	6.2061	1	334820			32111	11333	18576	18577	39456	39456					-0.022553958618573233
PFEAVILD	8	Unmodified	_PFEAVILD_					0	0	0		ENSG00000139182|ENST00000266546|CLSTN3;nc|ENSG00000139182|Q9BQT9-2|CLSTN3;ENST00000538933.1_1_12:7285507-7286365:+|nuORF;CLSTN3|p.L517Ffs*40|1|0.23|ENSG00000139182|chr12:7142875-7142876|-/T|frameshift_variant	ENSG00000139182|ENST00000266546|CLSTN3	ENSG00000139182|ENST00000266546|CLSTN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7766418457031	2	452.244744	902.474934	0.22633	0.00010236	3.9326	0.0017785	4.1589	0.0018808	452.2491340151882	58.299	0.48635	58.299	57.953	58.439	0					34	16	3	0	0	0	0.3366	1	14125	14125		18.135	3.5533	1	77847			32112	4215	18577	18578	39457	39457					0.01979577774613972
PFEGWGRRTL	10	Unmodified	_PFEGWGRRTL_					0	0	0			REV__ENSG00000163872|ENST00000305135|YEATS2	REV__ENSG00000163872|ENST00000305135|YEATS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5692443847656	3	406.884123	1217.63054	-0.3224	-0.00013118	0.15758	6.4115E-05	-0.16483	-6.7065E-05	406.8841047000742	15.54	0.44564	15.54	15.289	15.734	0					36	14	3	0	0	0	0.31942	1	1042	1042		6.1918	1.1443	1	74897	+		32113	17098	18578	18579	39458	39458					0.03043041348769293
PFEGWGRRTL	10	Unmodified	_PFEGWGRRTL_					0	0	0			REV__ENSG00000163872|ENST00000305135|YEATS2	REV__ENSG00000163872|ENST00000305135|YEATS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5691223144531	3	406.884123	1217.63054	-0.25731	-0.0001047	0.01599	6.5059E-06	-0.24132	-9.819E-05	406.8841574550189	15.625	0.41957	15.561	15.36	15.779	-0.064414					29	13	3	0	0	0	0.31942	1	1074	1074		6.1918	2.8722	1	96338	+		32114	17098	18578	18579	39459	39459					0.03043041348769293
PFEIRLPEFT	10	Unmodified	_PFEIRLPEFT_					0	0	0		ENST00000481694.1_1_6:134305546-134307074:+|nuORF;ENSG00000028839|ENST00000237264|TBPL1	ENST00000481694.1_1_6:134305546-134307074:+|nuORF	ENST00000481694.1_1_6:134305546-134307074:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.8344116210938	2	624.834788	1247.65502	0.35404	0.00022122	-0.84634	-0.00052882	-0.4923	-0.00030761	624.8342671064319	79.42	0.51595	79.391	79.128	79.644	-0.028931					48	20	3	0	0	0	0.40992	1	20554	20554		1.6526	0	1	318900			32115	544	18579	18580	39460	39460					0.04110256711601323
PFELVKMEF	9	Unmodified	_PFELVKMEF_					0	0	0		nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;ENST00000591701.5_1_19:10887861-10906203:+|nuORF	nc|ENSG00000106976|Q05193-5|DNM1	nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2798461914062	2	570.293911	1138.57327	0.3751	0.00021392	0.96954	0.00055293	1.3446	0.00076684	570.2945530252616	53.277	1.4729	53.277	52.849	54.322	0					140	54	4	0	0	0	0.23007	1	12778	12778		19.257	0	1	5034600			32116	1141	18580	18581	39461	39461					0.009524380281391132
PFFGQMAGEEN	11	Unmodified	_PFFGQMAGEEN_					0	0	0		ENST00000496724.1_1_3:38347478-38348849:+|nuORF	ENST00000496724.1_1_3:38347478-38348849:+|nuORF	ENST00000496724.1_1_3:38347478-38348849:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.8877258300781	3	409.509734	1225.50737	-0.27808	-0.00011388	-0.033824	-1.3851E-05	-0.3119	-0.00012773	409.8429026696727	23.186	0.14038	23.186	23.11	23.25	0					6	4	2	0	0	0	0.33318	1	3356	3356		0.45452	0	1	30548			32117	11241	18581	18582	39462	39462					-0.09636002884690242
PFFKEIKM	8	Unmodified	_PFFKEIKM_					0	0	0			REV__ENSG00000147536|ENST00000276533|GINS4	REV__ENSG00000147536|ENST00000276533|GINS4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2747802734375	2	520.285889	1038.55722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.815	1	92.904	92.404	93.404	0.089195								0	0	0	0.36486	1	24698	24698		7.9102	0	1		+		32118	16391	18582	18583	39463	39463					0.039487765819103515
PFFLWVSA	8	Unmodified	_PFFLWVSA_					0	0	0			REV__ENST00000577827.5_1_18:8122082-8296373:+|nuORF	REV__ENST00000577827.5_1_18:8122082-8296373:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2683410644531	2	483.757821	965.501089	0.26315	0.0001273	-0.029689	-1.4362E-05	0.23346	0.00011294	483.7578433513249	75.917	0.57489	75.886	75.588	76.163	-0.031487					38	20	3	0	0	0	0.29134	1	19461	19461		34.187	13.734	1	164980	+		32119	22462	18583	18584	39464	39464					0.016958917367446702
PFFLWVSA	8	Unmodified	_PFFLWVSA_					0	0	0			REV__ENST00000577827.5_1_18:8122082-8296373:+|nuORF	REV__ENST00000577827.5_1_18:8122082-8296373:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	483.757821	965.501089	-0.039083	-1.8907E-05	0.44703	0.00021625	0.40794	0.00019735	483.7580328672429	75.974	0.57104	75.974	75.649	76.22	0	0.0037148	0.00016494	NaN	34.187	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176160	+		32120	22462	18583	18584							0.016958917367446702
PFFLWVSA	8	Unmodified	_PFFLWVSA_					0	0	0			REV__ENST00000577827.5_1_18:8122082-8296373:+|nuORF	REV__ENST00000577827.5_1_18:8122082-8296373:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	483.757821	965.501089	0.15355	7.4281E-05	0.74466	0.00036024	0.89821	0.00043452	483.7579319345343	75.997	0.56393	76.051	75.756	76.32	0.053413	0.080552	0.00045291	NaN	34.187	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157300	+		32121	22462	18583	18584							0.016958917367446702
PFFNLQLIQI	10	Unmodified	_PFFNLQLIQI_					0	0	0			REV__chrX:70610543-70613253|397|28.71|0.16|7.46|-|2|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|6	REV__chrX:70610543-70613253|397|28.71|0.16|7.46|-|2|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2317810058594	3	411.572775	1231.69649	0.78843	0.0003245	-0.45171	-0.00018591	0.33671	0.00013858	411.90654884352443	33.941	0.3059	34.008	33.814	34.12	0.06636					15	10	2	0	0	0	0.32033	1	6617	6617		0.77653	0.63664	1	49290	+		32122	13226	18584	18585	39465	39465					0.08991437470967867
PFFPFFFGQL	10	Unmodified	_PFFPFFFGQL_					0	0	0			REV__ENST00000581241.5_1_17:80206597-80211051:-|nuORF	REV__ENST00000581241.5_1_17:80206597-80211051:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.9083557128906	3	416.214699	1245.62227	0.25818	0.00010746	0.2811	0.000117	0.53928	0.00022446	416.21520836318683	34.039	0.77424	34.039	33.753	34.528	0					69	27	3	0	0	0	0.32033	1	6610	6610		4.1895	2.1035	1	407430	+		32123	22485	18585	18586	39466	39466					0.009280943794237828
PFFPLFLEP	9	Unmodified	_PFFPLFLEP_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.80126953125	2	553.799686	1105.58482	0.13992	7.7487E-05	2.6114	0.0014462	2.7513	0.0015237	553.8012108151789	15.394	0.39628	15.284	15.121	15.517	-0.10982					21	13	2	0	0	0	0.34536	1	1038	1038		2.0598	0.21551	1	42691			32124	1859	18586	18587	39467	39467					0.0362500311380245
PFFRLGSD	8	Unmodified	_PFFRLGSD_					0	0	0		ENSG00000124508|ENST00000356709|BTN2A2;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2	ENSG00000124508|ENST00000356709|BTN2A2	ENSG00000124508|ENST00000356709|BTN2A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.2386169433594	2	469.74016	937.465767	0.064511	3.0303E-05	0.41576	0.0001953	0.48027	0.0002256	469.74025696574216	67.009	0.51059	67.093	66.877	67.387	0.083832					29	17	2	0	0	0	0.33245	1	16804	16804		19.439	0	1	222870			32125	3161	18587	18588	39468	39468					-0.005467707910383979
PFGPEGPI	8	Unmodified	_PFGPEGPI_					0	0	0			REV__ENST00000467622.2_1_12:110874278-110874939:-|nuORF	REV__ENST00000467622.2_1_12:110874278-110874939:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5691223144531	2	407.210704	812.406855	-0.25883	-0.0001054	-3.5889	-0.0014614	-3.8477	-0.0015668	407.20907721732226	15.536	0.36641	15.472	15.333	15.7	-0.064413					21	11	3	0	0	0	0.33995	1	1074	1074		15.768	0	1	60454	+		32126	14711	18588	18589	39469	39469					-0.006852470853800696
PFGTSVLVL	9	Unmodified	_PFGTSVLVL_					0	0	0			REV__ENST00000368457.2_1_1:154931107-154931215:-|nuORF	REV__ENST00000368457.2_1_1:154931107-154931215:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7762756347656	2	466.776211	931.537869	0.18841	8.7947E-05	-0.081226	-3.7915E-05	0.10719	5.0032E-05	466.77606765581953	76.013	1.5931	75.981	75.184	76.777	-0.031479					121	58	4	0	0	0	0.27532	1	19639	19639		12.532	0.89125	1	2648000	+		32127	20343	18589	18590	39470	39470					0.06936143562666075
PFHLKNRI	8	Unmodified	_PFHLKNRI_					0	0	0			REV__ENSG00000134569|ENST00000378623|LRP4	REV__ENSG00000134569|ENST00000378623|LRP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2413940429688	2	512.806168	1023.59778	0.19712	0.00010108	-1.9472	-0.00099851	-1.75	-0.00089743	512.8050964417434	23.955	0.49132	23.955	23.643	24.134	0					31	16	3	0	0	0	0.344	1	3606	3606		2.5775	0	1	69951	+		32128	15684	18590	18591	39471	39471					0.08692879016552979
PFHPRLLA	8	Unmodified	_PFHPRLLA_					0	0	0		ENST00000396081.5_1_7:35734290-35734692:-|nuORF	ENST00000396081.5_1_7:35734290-35734692:-|nuORF	ENST00000396081.5_1_7:35734290-35734692:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.2347412109375	2	475.782162	949.549771	0.040596	1.9315E-05	-0.6909	-0.00032872	-0.6503	-0.0003094	475.78056031675055	15.352	0.24697	15.242	15.038	15.285	-0.10981					10	8	2	0	0	0	0.34434	1	951	951		0.79363	0	1	23951			32129	10105	18591	18592	39472	39472					0.07297805096504817
PFHSILSVL	9	Unmodified	_PFHSILSVL_					0	0	0		ENSG00000163382|ENST00000368235|NAXE;nc|ENSG00000163382|Q8NCW5-2|NAXE	ENSG00000163382|ENST00000368235|NAXE	ENSG00000163382|ENST00000368235|NAXE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7950744628906	2	506.794935	1011.57532	0.33542	0.00016999	0.27682	0.00014029	0.61224	0.00031028	506.794922680048	70.249	1.0872	70.249	69.815	70.902	0					110	39	4	0	0	0	0.044952	3	17800	17753;17800;17853		54.774	0	1	1971800			32130	5673	18592	18593	39473;39474;39475	39474					0.06999234828288081
PFHSILSVL	9	Unmodified	_PFHSILSVL_					0	0	0		ENSG00000163382|ENST00000368235|NAXE;nc|ENSG00000163382|Q8NCW5-2|NAXE	ENSG00000163382|ENST00000368235|NAXE	ENSG00000163382|ENST00000368235|NAXE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.79498291015625	2	506.794935	1011.57532	0.29666	0.00015035	0.28026	0.00014203	0.57692	0.00029238	506.7949364824223	70.257	1.1662	70.323	69.856	71.022	0.066048					121	41	4	0	0	0	0.019896	2	17774	17774;17825		64.236	0	1	1848800			32131	5673	18592	18593	39476;39477	39476					0.06999234828288081
PFHSILSVL	9	Unmodified	_PFHSILSVL_					0	0	0		ENSG00000163382|ENST00000368235|NAXE;nc|ENSG00000163382|Q8NCW5-2|NAXE	ENSG00000163382|ENST00000368235|NAXE	ENSG00000163382|ENST00000368235|NAXE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7950134277344	2	506.794935	1011.57532	0.33564	0.0001701	0.30084	0.00015246	0.63648	0.00032257	506.79491684052283	70.338	1.1698	70.313	69.801	70.971	-0.024864					105	41	4	0	0	0	0.062246	2	17785	17785;17835		48.346	0	1	1831700			32132	5673	18592	18593	39478;39479	39478					0.06999234828288081
PFIIKCVK	8	Unmodified	_PFIIKCVK_					0	0	0			REV__ENST00000534766.1_1_11:45967557-45971796:-|nuORF	REV__ENST00000534766.1_1_11:45967557-45971796:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2908935546875	2	474.290974	946.567395	0.11852	5.6214E-05	-0.015725	-7.458E-06	0.1028	4.8756E-05	474.29087456331933	73.091	2.012	73.091	72.667	74.679	0					175	70	4	0	0	0	0.45851	1	18754	18754		2.8892	0	1	1679500	+		32133	22058	18593	18594	39480	39480					0.09197384307151424
PFISLRPTN	9	Unmodified	_PFISLRPTN_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.811767578125	2	522.795466	1043.57638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.6	1	86.6	86.1	87.1	0								0	0	0	0.22065	1	22800	22800		15.847	0	1				32134	6426	18594	18595	39481	39481					0.056334491971938405
PFKDIHLAR	9	Unmodified	_PFKDIHLAR_					0	0	0		nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3355102539062	2	548.816733	1095.61891	0.25544	0.00014019	0.22693	0.00012454	0.48237	0.00026473	548.8169811881714	22.395	0.26355	22.395	22.331	22.594	0					12	8	2	0	0	0	0.25202	1	3126	3126		10.824	0	1	59607			32135	12621	18595	18596	39482	39482					0.07492844325406622
PFKFNRTF	8	Unmodified	_PFKFNRTF_					0	0	0			REV__ENST00000552197.5_1_12:46598154-46598319:-|nuORF	REV__ENST00000552197.5_1_12:46598154-46598319:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.279541015625	2	528.784902	1055.55525	0.47226	0.00024972	3.2057	0.0016951	3.678	0.0019449	528.7844581259113	86.977	0.50486	87.065	86.824	87.329	0.08709					58	20	4	0	0	0	0.33916	1	22897	22897		26.341	4.5946	1	583470	+		32136	22215	18596	18597	39483	39483					0.029694838883187913
PFKFNRTF	8	Unmodified	_PFKFNRTF_					0	0	0			REV__ENST00000552197.5_1_12:46598154-46598319:-|nuORF	REV__ENST00000552197.5_1_12:46598154-46598319:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	528.784902	1055.55525	0.67456	0.0003567	-1.0259	-0.00054246	-0.3513	-0.00018576	528.7843982942275	87.051	0.48307	87.051	86.883	87.366	0	-0.029959	-0.00015657	NaN	26.341	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420860	+		32137	22215	18596	18597							0.029694838883187913
PFKFNRTF	8	Unmodified	_PFKFNRTF_					0	0	0			REV__ENST00000552197.5_1_12:46598154-46598319:-|nuORF	REV__ENST00000552197.5_1_12:46598154-46598319:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	528.784902	1055.55525	0.47226	0.00024972	3.2057	0.0016951	3.678	0.0019449	528.7844581259113	86.977	0.50486	87.065	86.824	87.329	0.08709	-0.016896	0.0043186	NaN	26.341	58	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	583470	+		32138	22215	18596	18597							0.029694838883187913
PFKFNRTF	8	Unmodified	_PFKFNRTF_					0	0	0			REV__ENST00000552197.5_1_12:46598154-46598319:-|nuORF	REV__ENST00000552197.5_1_12:46598154-46598319:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.784902	1055.55525	0.62014	0.00032792	-0.72363	-0.00038265	-0.1035	-5.4727E-05	528.7845814273944	87.134	0.46917	87.128	86.866	87.335	-0.0056229	0.046855	0.00016305	NaN	26.341	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	471850	+		32139	22215	18596	18597							0.029694838883187913
PFKGSQKL	8	Unmodified	_PFKGSQKL_					0	0	0			REV__ENSG00000144357|ENST00000272793|UBR3	REV__ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.5650329589844	2	452.766178	903.517802	-0.16215	-7.3415E-05	-3.9469	-0.001787	-4.109	-0.0018604	452.76429329266057	13.444	0.29522	13.444	13.365	13.66	0					14	9	2	0	0	0	0.34272	1	441	441		7.9102	2.6795	1	75016	+		32140	16229	18597	18598	39484	39484					0.06218392622713509
PFKNTTYSIL	10	Unmodified	_PFKNTTYSIL_					0	0	0			REV__ENST00000518493.1_1_8:144077326-144077527:+|nuORF	REV__ENST00000518493.1_1_8:144077326-144077527:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.7728271484375	2	592.321514	1182.62847	0.23435	0.00013881	-0.54891	-0.00032513	-0.31456	-0.00018632	592.3211312249326	60.231	0.51782	60.219	59.968	60.485	-0.011486					45	17	4	0	0	0	0.31358	1	14785	14785		13.906	1.6654	1	1308500	+		32141	13738	18598	18599	39485	39485					0.04446567820264136
PFKRRRRRAQT	11	Unmodified	_PFKRRRRRAQT_					0	0	0			REV__ENST00000475854.1_1_X:100914419-100914797:-|nuORF	REV__ENST00000475854.1_1_X:100914419-100914797:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2989807128906	3	491.299153	1470.87563	0.28203	0.00013856	0.44781	0.00022001	0.72984	0.00035857	491.29922267296126	104.4	0.79325	104.4	104.09	104.88	0.0011444					360	108	4	0	0	0	0.47713	3	27742	27742;27769;27807		1.1098	0.74308	1	2056600	+		32142	20018	18599	18600	39486;39487;39488	39486					0.15902759602272454
PFKSKKKR	8	Unmodified	_PFKSKKKR_					0	0	0			REV__ENSG00000100483|ENST00000395860|VCPKMT	REV__ENSG00000100483|ENST00000395860|VCPKMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3083801269531	2	509.829643	1017.64473	0.32662	0.00016652	-0.3446	-0.00017569	-0.017982	-9.1679E-06	509.82939763102115	44.226	0.83175	44.226	43.878	44.71	0					48	30	2	0	0	0	0.34218	1	9925	9925		9.3474	8.6571	1	553910	+		32143	14204	18600	18601	39489	39489					0.13661738567702741
PFKSKKKR	8	Unmodified	_PFKSKKKR_					0	0	0			REV__ENSG00000100483|ENST00000395860|VCPKMT	REV__ENSG00000100483|ENST00000395860|VCPKMT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	509.829643	1017.64473	0.34515	0.00017597	-0.42743	-0.00021792	-0.08228	-4.1949E-05	509.8293148172741	44.072	0.87455	44.149	43.816	44.691	0.077518	-0.038272	-5.1214E-05	NaN	9.3474	58	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	703750	+		32144	14204	18600	18601							0.13661738567702741
PFLAKGQLL	9	Unmodified	_PFLAKGQLL_					0	0	0			REV__ENSG00000185386|ENST00000330651|MAPK11	REV__ENSG00000185386|ENST00000330651|MAPK11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.8053283691406	2	493.805303	985.596052	0.46449	0.00022937	0.046744	2.3082E-05	0.51123	0.00025245	493.8055859694772	63.498	0.82216	63.498	63.093	63.915	0					45	29	2	0	0	0	0.1669	1	15734	15734		28.487	0	1	257180	+		32145	18377	18601	18602	39490	39490					0.10267825207949954
PFLHLLGT	8	Unmodified	_PFLHLLGT_					0	0	0		ENST00000510122.1_1_5:179745730-179751357:-|nuORF	ENST00000510122.1_1_5:179745730-179751357:-|nuORF	ENST00000510122.1_1_5:179745730-179751357:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2815246582031	2	449.263271	896.511988	0.3027	0.00013599	0.21699	9.7486E-05	0.51969	0.00023348	449.26316680311	58.919	0.48807	58.904	58.656	59.144	-0.014267					41	16	3	0	0	0	0.38703	1	14356	14356		20.871	3.9289	1	413300			32146	11367	18602	18603	39491	39491					0.05959294111062263
PFLIGTLPR	9	Unmodified	_PFLIGTLPR_					0	0	0			REV__ENST00000375895.6_1_6:31632636-31633491:-|nuORF	REV__ENST00000375895.6_1_6:31632636-31633491:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7632141113281	2	507.310752	1012.60695	0.39617	0.00020098	0.38983	0.00019776	0.786	0.00039875	507.31114298261775	62.394	0.45238	62.394	62.266	62.718	0					25	16	2	0	0	0	0.24311	1	15413	15413		16.942	8.349	1	158920	+		32147	20482	18603	18604	39492	39492					0.10115227582230091
PFLIGTLPR	9	Unmodified	_PFLIGTLPR_					0	0	0			REV__ENST00000375895.6_1_6:31632636-31633491:-|nuORF	REV__ENST00000375895.6_1_6:31632636-31633491:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.7631530761719	2	507.310752	1012.60695	0.36278	0.00018404	0.58085	0.00029467	0.94363	0.00047871	507.31114088374625	62.378	0.4302	62.369	62.191	62.621	-0.0085526					27	15	2	0	0	0	0.25066	1	15396	15396		7.2892	2.5332	1	160720	+		32148	20482	18603	18604	39493	39493					0.10115227582230091
PFLILPMTF	9	Unmodified	_PFLILPMTF_					0	0	0		ENSG00000157551|ENST00000398938|KCNJ15	ENSG00000157551|ENST00000398938|KCNJ15	ENSG00000157551|ENST00000398938|KCNJ15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2610473632812	2	539.803914	1077.59328	0.43806	0.00023647	-1.3399	-0.00072328	-0.90183	-0.00048681	539.8033091554914	21.915	0.25847	21.865	21.689	21.948	-0.049377					13	9	2	0	0	0	0.25417	1	2968	2968		8.5933	1.8701	1	51151			32149	5313	18604	18605	39494	39494					0.057582337587746224
PFLLPLAQP	9	Unmodified	_PFLLPLAQP_					0	0	0			REV__PROSER1|p.S775Lfs*174|1|0.16|ENSG00000120685|chr13:39012930-39012930|G/-|frameshift_variant	REV__PROSER1|p.S775Lfs*174|1|0.16|ENSG00000120685|chr13:39012930-39012930|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3099670410156	2	498.299853	994.585153	0.32675	0.00016282	-0.060294	-3.0045E-05	0.26645	0.00013277	498.29994776332217	93.572	0.78339	93.659	93.201	93.984	0.08667					100	64	3	0	0	0	0.30623	1	24881	24881		7.9102	0	1	213460	+		32150	23292	18605	18606	39495	39495					0.08764422833644403
PFLMLYLL	8	Unmodified	_PFLMLYLL_					0	0	0		ENSG00000225781|ENST00000418316|OR6V1	ENSG00000225781|ENST00000418316|OR6V1	ENSG00000225781|ENST00000418316|OR6V1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.29266357421875	2	505.293182	1008.57181	0.36176	0.00018279	-2.1578	-0.0010903	-1.7961	-0.00090754	505.29248777659535	86.922	0.5995	87.009	86.705	87.305	0.08709					39	24	2	0	0	0	0.44842	1	22902	22902		6.3541	0	1	320100			32151	8448	18606	18607	39496	39496					0.06786848730052952
PFLNPFILT	9	Unmodified	_PFLNPFILT_					0	0	0		ENSG00000225781|ENST00000418316|OR6V1	ENSG00000225781|ENST00000418316|OR6V1	ENSG00000225781|ENST00000418316|OR6V1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2720947265625	2	531.305136	1060.59572	0.42167	0.00022404	-1.5635	-0.00083071	-1.1419	-0.00060668	531.3037327587796	67.761	0.5121	67.745	67.478	67.991	-0.016296					41	17	4	0	0	0	0.2451	1	16958	16958		15.847	5.0233	1	182580			32152	8448	18607	18608	39497	39497					0.06784405488065204
PFLNPFILT	9	Unmodified	_PFLNPFILT_					0	0	0		ENSG00000225781|ENST00000418316|OR6V1	ENSG00000225781|ENST00000418316|OR6V1	ENSG00000225781|ENST00000418316|OR6V1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.305136	1060.59572	0.50355	0.00026754	-0.81087	-0.00043082	-0.30732	-0.00016328	531.3039527059597	67.814	0.6032	67.814	67.623	68.226	0	0.025194	0.0009079	NaN	15.847	37	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221030			32153	8448	18607	18608							0.06784405488065204
PFLNPFILT	9	Unmodified	_PFLNPFILT_					0	0	0		ENSG00000225781|ENST00000418316|OR6V1	ENSG00000225781|ENST00000418316|OR6V1	ENSG00000225781|ENST00000418316|OR6V1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	531.305136	1060.59572	0.51566	0.00027397	-2.8159	-0.0014961	-2.3003	-0.0012222	531.3041571189732	67.729	0.75879	67.807	67.488	68.246	0.078041	0.018793	-0.0012227	NaN	15.847	34	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173730			32154	8448	18607	18608							0.06784405488065204
PFLPASNLF	9	Unmodified	_PFLPASNLF_					0	0	0		nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-4|TMTC4;ENST00000478272.1_1_13:101287253-101288829:-|nuORF	nc|ENSG00000125247|Q5T4D3-2|TMTC4	nc|ENSG00000125247|Q5T4D3-2|TMTC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.27435302734375	2	503.273835	1004.53312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.813	1	80.813	80.313	81.313	0								0	0	0	0.035558	1	21023	21023		65.235	0	1				32155	3194	18608	18609	39498	39498					0.03103259419913229
PFLPASNLF	9	Unmodified	_PFLPASNLF_					0	0	0		nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-4|TMTC4;ENST00000478272.1_1_13:101287253-101288829:-|nuORF	nc|ENSG00000125247|Q5T4D3-2|TMTC4	nc|ENSG00000125247|Q5T4D3-2|TMTC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.2743225097656	2	503.273835	1004.53312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.566	1	80.631	80.131	81.131	0.065094								0	0	0	0.013607	1	20936	20936		74.929	0	1				32156	3194	18608	18609	39499	39499					0.03103259419913229
PFLPASNLF	9	Unmodified	_PFLPASNLF_					0	0	0		nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-4|TMTC4;ENST00000478272.1_1_13:101287253-101288829:-|nuORF	nc|ENSG00000125247|Q5T4D3-2|TMTC4	nc|ENSG00000125247|Q5T4D3-2|TMTC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.2742919921875	2	503.273835	1004.53312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.765	1	80.83	80.33	81.33	0.065094								0	0	0	0.065718	1	20996	20996		56.177	0	1				32157	3194	18608	18609	39500	39500					0.03103259419913229
PFLPASNLF	9	Unmodified	_PFLPASNLF_					0	0	0		nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-4|TMTC4;ENST00000478272.1_1_13:101287253-101288829:-|nuORF	nc|ENSG00000125247|Q5T4D3-2|TMTC4	nc|ENSG00000125247|Q5T4D3-2|TMTC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2738342285156	2	503.273835	1004.53312	0.33272	0.00016745	3.6922	0.0018582	4.0249	0.0020256	503.27388476899563	80.817	1.7922	80.79	80.233	82.026	-0.026825					180	73	4	0	0	0	0.016723	1	20973	20973		69.105	0	1	686290			32158	3194	18608	18609	39501	39501					0.03103259419913229
PFLPASNLFF	10	Unmodified	_PFLPASNLFF_					0	0	0		nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-4|TMTC4;ENST00000478272.1_1_13:101287253-101288829:-|nuORF	nc|ENSG00000125247|Q5T4D3-2|TMTC4	nc|ENSG00000125247|Q5T4D3-2|TMTC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.8080444335938	2	576.808042	1151.60153	0.10772	6.2135E-05	0.30492	0.00017588	0.41265	0.00023802	576.808172012796	93.831	0.87788	93.831	93.498	94.376	0					158	71	3	0	0	0	0.18121	1	24969	24969		55.503	0	1	284220			32159	3194	18609	18610	39502	39502					0.03179503999763256
PFLPASNLFF	10	Unmodified	_PFLPASNLFF_					0	0	0		nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-4|TMTC4;ENST00000478272.1_1_13:101287253-101288829:-|nuORF	nc|ENSG00000125247|Q5T4D3-2|TMTC4	nc|ENSG00000125247|Q5T4D3-2|TMTC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8082275390625	2	576.808042	1151.60153	0.27767	0.00016016	-0.65541	-0.00037805	-0.37774	-0.00021788	576.808041212953	93.654	0.59118	93.741	93.513	94.104	0.08667					138	45	4	0	0	0	0.31119	1	24937	24937		18.373	0	1	417590			32160	3194	18609	18610	39503	39503					0.03179503999763256
PFLPASNLFF	10	Unmodified	_PFLPASNLFF_					0	0	0		nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-4|TMTC4;ENST00000478272.1_1_13:101287253-101288829:-|nuORF	nc|ENSG00000125247|Q5T4D3-2|TMTC4	nc|ENSG00000125247|Q5T4D3-2|TMTC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8084716796875	2	576.808042	1151.60153	0.36885	0.00021276	-0.052237	-3.0131E-05	0.31662	0.00018263	576.8079777903034	93.724	1.0308	93.723	93.462	94.493	-0.00051117					146	76	3	0	0	0	0.18121	1	24964	24964		55.503	0	1	421800			32161	3194	18609	18610	39504	39504					0.03179503999763256
PFLTLPGLGP	10	Unmodified	_PFLTLPGLGP_					0	0	0			REV__ENST00000568396.2_1_16:67881292-67881436:+|nuORF	REV__ENST00000568396.2_1_16:67881292-67881436:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.32684326171875	2	506.29731	1010.58007	0.38382	0.00019433	1.1388	0.00057658	1.5226	0.00077091	506.2979363693114	63.081	0.52823	63.176	63.122	63.65	0.095722					31	18	2	0	0	0	0.2504	1	15631	15631		26.884	1.4843	1	340850	+		32162	22394	18610	18611	39505	39505					0.07520118971046941
PFLTQGEAPF	10	Unmodified	_PFLTQGEAPF_					0	0	0			REV__ENST00000245796.10_1_2:113959052-113959157:+|nuORF	REV__ENST00000245796.10_1_2:113959052-113959157:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.830078125	2	553.779482	1105.54441	0.39786	0.00022033	-0.18995	-0.00010519	0.20791	0.00011513	553.7791375313174	79.609	0.24772	79.609	79.467	79.714	0					12	9	2	0	0	0	0.31165	1	20623	20623		15.847	4.2069	1	74530	+		32163	19504	18611	18612	39506	39506					-0.004139632766282375
PFLTQGEAPF	10	Unmodified	_PFLTQGEAPF_					0	0	0			REV__ENST00000245796.10_1_2:113959052-113959157:+|nuORF	REV__ENST00000245796.10_1_2:113959052-113959157:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8297729492188	2	553.779482	1105.54441	0.40056	0.00022182	-1.0467	-0.00057962	-0.6461	-0.0003578	553.7787736771663	79.69	0.23208	79.661	79.495	79.727	-0.028923					13	8	2	0	0	0	0.31165	1	20657	20657		15.847	4.2069	1	80602	+		32164	19504	18611	18612	39507	39507					-0.004139632766282375
PFLYFYRF	8	Unmodified	_PFLYFYRF_					0	0	0		ENST00000581444.5_1_18:20889645-20956810:-|nuORF;ENSG00000134490|ENST00000383233|TMEM241	ENST00000581444.5_1_18:20889645-20956810:-|nuORF	ENST00000581444.5_1_18:20889645-20956810:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.8080444335938	2	576.797478	1151.5804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.873	1	93.873	93.373	94.373	0								0	0	0	0.34752	1	25018	25018		15.768	2.2603	1				32165	3789	18612	18613	39508	39508					0.010675386908815199
PFLYFYRF	8	Unmodified	_PFLYFYRF_					0	0	0		ENST00000581444.5_1_18:20889645-20956810:-|nuORF;ENSG00000134490|ENST00000383233|TMEM241	ENST00000581444.5_1_18:20889645-20956810:-|nuORF	ENST00000581444.5_1_18:20889645-20956810:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8082275390625	2	576.797478	1151.5804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.612	1	93.698	93.198	94.198	0.08667								0	0	0	0.33276	1	24937	24937		22.453	3.0136	1				32166	3789	18612	18613	39509	39509					0.010675386908815199
PFMELTSL	8	Unmodified	_PFMELTSL_					0	0	0		nc|ENSG00000100605|Q13572-2|ITPK1;ENSG00000100605|ENST00000267615|ITPK1	nc|ENSG00000100605|Q13572-2|ITPK1	nc|ENSG00000100605|Q13572-2|ITPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.23876953125	2	469.238604	936.462655	0.014403	6.7583E-06	0.82759	0.00038834	0.84199	0.00039509	469.2389877621628	67.155	0.90533	67.155	66.768	67.673	0					62	31	3	0	0	0	0.32313	1	16850	16850		28.173	0	1	605810			32167	1615	18613	18614	39510	39510					-0.008117819600670373
PFMELTSL	8	Unmodified	_PFMELTSL_					0	0	0		nc|ENSG00000100605|Q13572-2|ITPK1;ENSG00000100605|ENST00000267615|ITPK1	nc|ENSG00000100605|Q13572-2|ITPK1	nc|ENSG00000100605|Q13572-2|ITPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.2388916015625	2	469.238604	936.462655	0.043897	2.0598E-05	1.3132	0.00061623	1.3571	0.00063682	469.2393014356148	67.156	1.2023	67.14	66.814	68.017	-0.016296					65	41	3	0	0	0	0.33916	1	16838	16838		26.341	0	1	574650			32168	1615	18613	18614	39511	39511					-0.008117819600670373
PFMELTSL	8	Unmodified	_PFMELTSL_					0	0	0		nc|ENSG00000100605|Q13572-2|ITPK1;ENSG00000100605|ENST00000267615|ITPK1	nc|ENSG00000100605|Q13572-2|ITPK1	nc|ENSG00000100605|Q13572-2|ITPK1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	469.238604	936.462655	0.043897	2.0598E-05	1.3132	0.00061623	1.3571	0.00063682	469.2393014356148	67.156	1.2023	67.14	66.814	68.017	-0.016296	-0.0076529	0.00029338	NaN	28.173	65	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	574650			32169	1615	18613	18614							-0.008117819600670373
PFMVSLQL	8	Oxidation (M)	_PFM(Oxidation (M))VSLQL_		PFM(1)VSLQL		PFM(61)VSLQL	0	0	1		ENSG00000197561|ENST00000263621|ELANE	ENSG00000197561|ENST00000263621|ELANE	ENSG00000197561|ENST00000263621|ELANE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.7544860839844	2	475.754421	949.494289	0.1389	6.6084E-05	0.49597	0.00023596	0.63487	0.00030204	475.75439683040963	68.133	0.86623	68.133	67.809	68.675	0					66	31	3	0	0	0	0.095164	2	17200	17149;17200		61.357	8.6644	1	2508500			32170	7976	18614	18615	39512;39513	39513		869			0.017522107939043963
PFMVSLQL	8	Oxidation (M)	_PFM(Oxidation (M))VSLQL_		PFM(1)VSLQL		PFM(57)VSLQL	0	0	1		ENSG00000197561|ENST00000263621|ELANE	ENSG00000197561|ENST00000263621|ELANE	ENSG00000197561|ENST00000263621|ELANE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.75445556640625	2	475.754421	949.494289	0.28608	0.0001361	0.29342	0.0001396	0.5795	0.0002757	475.75429819963495	68.045	1.1386	68.123	67.802	68.94	0.078041					77	41	3	0	0	0	0.11736	1	17126	17126		57.471	9.1255	1	2420200			32171	7976	18614	18615	39514	39514		869			0.017522107939043963
PFMVSLQL	8	Oxidation (M)	_PFM(Oxidation (M))VSLQL_		PFM(1)VSLQL		PFM(48)VSLQL	0	0	1		ENSG00000197561|ENST00000263621|ELANE	ENSG00000197561|ENST00000263621|ELANE	ENSG00000197561|ENST00000263621|ELANE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.75433349609375	2	475.754421	949.494289	0.28786	0.00013695	0.35509	0.00016894	0.64295	0.00030589	475.7543017135285	68.126	1.0856	68.107	67.836	68.921	-0.019157					77	38	3	0	0	0	0.16948	1	17198	17198		48.346	14.159	1	2588200			32172	7976	18614	18615	39515	39515		869			0.017522107939043963
PFNKSLEGF	9	Unmodified	_PFNKSLEGF_					0	0	0		THE1B-int_dup38|chr1:59888735-59890293:-|2.5909301945492014|0.1975042163789512|3.71|511.0|61|1|anti-sense	THE1B-int_dup38|chr1:59888735-59890293:-|2.5909301945492014|0.1975042163789512|3.71|511.0|61|1|anti-sense	THE1B-int_dup38|chr1:59888735-59890293:-|2.5909301945492014|0.1975042163789512|3.71|511.0|61|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.8023071289062	2	519.766374	1037.5182	0.53754	0.0002794	0.51085	0.00026552	1.0484	0.00054492	519.7667911243177	65.909	1.3493	65.998	65.811	67.161	0.088882					72	48	2	0	0	0	0.22596	1	16606	16606		21.747	2.4897	1	391000			32173	23392	18615	18616	39516	39516					0.0009376755190260155
PFNKSLEGF	9	Unmodified	_PFNKSLEGF_					0	0	0		THE1B-int_dup38|chr1:59888735-59890293:-|2.5909301945492014|0.1975042163789512|3.71|511.0|61|1|anti-sense	THE1B-int_dup38|chr1:59888735-59890293:-|2.5909301945492014|0.1975042163789512|3.71|511.0|61|1|anti-sense	THE1B-int_dup38|chr1:59888735-59890293:-|2.5909301945492014|0.1975042163789512|3.71|511.0|61|1|anti-sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	519.766374	1037.5182	0.60971	0.00031691	0.50971	0.00026493	1.1194	0.00058184	519.7668152547552	66.128	1.2811	66.128	65.795	67.076	0	0.048065	-2.0968E-05	NaN	21.747	75	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	457230			32174	23392	18615	18616							0.0009376755190260155
PFNYDGII	8	Unmodified	_PFNYDGII_					0	0	0			REV__ENST00000452143.5_1_1:62902154-62905498:+|nuORF	REV__ENST00000452143.5_1_1:62902154-62905498:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.3075256347656	2	469.734543	937.454533	-0.24771	-0.00011636	-0.59972	-0.00028171	-0.84743	-0.00039807	469.7342609088066	61.556	0.54171	61.653	61.354	61.896	0.096985					25	19	2	0	0	0	0.31934	1	15106	15106		18.135	18.135	1	195020	+		32175	21124	18616	18617	39517	39517					-0.016695928851959252
PFPAPPSL	8	Unmodified	_PFPAPPSL_					0	0	0			REV__ENST00000532094.5_1_11:420655-431830:-|nuORF	REV__ENST00000532094.5_1_11:420655-431830:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2212219238281	2	413.228897	824.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.009	1	37.096	36.596	37.596	0.08741								0	0	0	0.33941	1	7577	7577		19.439	0	1		+		32176	22028	18617	18618	39518	39518					0.023996298113161174
PFPGLVINN	9	Unmodified	_PFPGLVINN_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.3135070800781	2	485.77146	969.528367	-0.096115	-4.669E-05	-3.7867	-0.0018395	-3.8828	-0.0018862	485.76986798336793	13.281	0.3826	13.182	12.98	13.362	-0.099291					17	12	2	0	0	0	0.26145	1	347	347		2.0598	0	1	33393			32177	8667	18618	18619	39519	39519					0.04238375277122941
PFPIMGPEE	9	Unmodified	_PFPIMGPEE_					0	0	0		ENSG00000156873|ENST00000563588|PHKG2	ENSG00000156873|ENST00000563588|PHKG2	ENSG00000156873|ENST00000563588|PHKG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.66912841796875	2	508.741511	1015.46847	0.090947	4.6269E-05	0.081278	4.1349E-05	0.17222	8.7618E-05	508.74166648826713	18.139	0.98385	18.022	17.663	18.647	-0.11739					76	33	3	0	0	0	0.25938	1	1906	1906		4.3292	0.38484	1	119490			32178	5262	18619	18620	39520	39520					-0.03864683448409778
PFPLIALSLPR	11	Unmodified	_PFPLIALSLPR_					0	0	0			REV__ENST00000254323.6_1_19:13942265-13942868:+|nuORF	REV__ENST00000254323.6_1_19:13942265-13942868:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.58837890625	3	408.588536	1222.74378	0.16507	6.7445E-05	0.52662	0.00021517	0.69169	0.00028261	408.58867229836676	39.09	1.1926	39.189	38.544	39.736	0.099407					94	42	3	0	0	0	0.45422	1	8238	8238		4.1166	1.2733	1	550090	+		32179	19542	18620	18621	39521	39521					0.1413171674194018
PFPLVFVF	8	Unmodified	_PFPLVFVF_					0	0	0			REV__ENST00000370490.1_1_X:144906531-144906621:+|nuORF	REV__ENST00000370490.1_1_X:144906531-144906621:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.27874755859375	2	483.278389	964.542226	0.43609	0.00021075	-0.045104	-2.1798E-05	0.39098	0.00018895	483.27874672542566	84.92	0.75398	84.92	84.663	85.417	0					76	28	4	0	0	0	0.45851	1	22379	22379		2.8892	0	1	787010	+		32180	20379	18621	18622	39522	39522					0.05853652776227136
PFQRRLPG	8	Unmodified	_PFQRRLPG_					0	0	0		GAL3ST4|p.L216Pfs*106|1|0.19|ENSG00000197093|chr7:100160739-100160742|GGCA/-|frameshift_variant;ENSG00000197093|ENST00000360039|GAL3ST4	GAL3ST4|p.L216Pfs*106|1|0.19|ENSG00000197093|chr7:100160739-100160742|GGCA/-|frameshift_variant	GAL3ST4|p.L216Pfs*106|1|0.19|ENSG00000197093|chr7:100160739-100160742|GGCA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2660827636719	2	485.782693	969.550834	0.26134	0.00012695	-1.9204	-0.00093289	-1.659	-0.00080593	485.78157236058513	37.769	0.68255	37.866	37.552	38.235	0.097527					32	24	2	0	0	0	0.34218	1	7746	7746		9.3474	3.6156	1	185340			32181	7928	18622	18623	39523	39523					0.06484019465426627
PFQTIFTK	8	Unmodified	_PFQTIFTK_					0	0	0			REV__ENST00000260323.15_1_15:54919629-54919713:+|nuORF	REV__ENST00000260323.15_1_15:54919629-54919713:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.8288879394531	2	491.273835	980.533118	0.33709	0.00016561	0.2619	0.00012867	0.599	0.00029427	491.2739821263608	62.697	0.74932	62.688	62.302	63.051	-0.0085526					48	27	2	0	0	0	0.33293	1	15493	15493		20.454	20.454	1	871790	+		32182	19577	18623	18624	39524	39524					0.042072594199112245
PFRAEPTHW	9	Unmodified	_PFRAEPTHW_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2584228515625	2	570.78289	1139.55123	-0.00052272	-2.9836E-07	0.55713	0.000318	0.5566	0.0003177	570.7834648076803	28.456	0.8637	28.456	27.981	28.845	0					55	29	3	0	0	0	0.25526	1	5010	5010		7.9102	0	1	296820			32183	964	18624	18625	39525	39525					-0.012966056053983266
PFRIGSDPF	9	Unmodified	_PFRIGSDPF_					0	0	0		ENST00000496435.1_1_7:134222911-134223016:+|nuORF	ENST00000496435.1_1_7:134222911-134223016:+|nuORF	ENST00000496435.1_1_7:134222911-134223016:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2954711914062	2	518.266542	1034.51853	0.56347	0.00029203	0.91377	0.00047358	1.4772	0.00076561	518.2669559618333	63.9	0.4925	63.9	63.665	64.158	0					25	17	2	0	0	0	0.25202	1	15790	15790		10.824	0	1	198020			32184	11235	18625	18626	39526	39526					0.002651872717478909
PFRRYDVI	8	Unmodified	_PFRRYDVI_					0	0	0		ENSG00000203740|ENST00000439373|NTMT2	ENSG00000203740|ENST00000439373|NTMT2	ENSG00000203740|ENST00000439373|NTMT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.295166015625	2	533.295633	1064.57671	0.49507	0.00026402	-0.18394	-9.8094E-05	0.31113	0.00016592	533.2954716912648	36.097	0.80162	36.179	35.849	36.651	0.082355					60	28	3	0	0	0	0.35375	1	7264	7264		24.674	1.9376	1	922650			32185	8184	18626	18627	39527	39527					0.04700868917052503
PFRVAPVL	8	Unmodified	_PFRVAPVL_					0	0	0		nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.7791442871094	2	449.779088	897.543623	0.046085	2.0728E-05	0.13554	6.0963E-05	0.18163	8.1692E-05	449.77903229648905	61.062	1.2243	61.159	60.779	62.004	0.096985					105	44	3	0	0	0	0.2157	2	14949	14949;15055		40.449	2.2974	1	3564800			32186	12886	18627	18628	39528;39529	39528					0.09075286864992904
PFRVAPVL	8	Unmodified	_PFRVAPVL_					0	0	0		nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.3102111816406	2	449.779088	897.543623	0.18762	8.4387E-05	-0.21745	-9.7804E-05	-0.029829	-1.3416E-05	449.77897155984	57.223	0.44323	57.301	57.04	57.484	0.078674					20	15	2	0	0	0	0.34185	1	13715	13715		10.183	0	1	167440			32187	12886	18627	18628	39530	39530					0.09075286864992904
PFRVAPVL	8	Unmodified	_PFRVAPVL_					0	0	0		nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.77911376953125	2	449.779088	897.543623	0.10988	4.9423E-05	0.09451	4.2509E-05	0.20439	9.1931E-05	449.77905803258443	61.16	1.2009	61.151	60.838	62.039	-0.0094566					104	43	3	0	0	0	0.2157	1	14974	14974		40.449	2.2974	1	3854200			32188	12886	18627	18628	39531	39531					0.09075286864992904
PFRVAPVL	8	Unmodified	_PFRVAPVL_					0	0	0		nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	449.779088	897.543623	0.3276	0.00014735	-0.3714	-0.00016705	-0.04379	-1.9696E-05	449.7789399497209	57.463	0.38694	57.463	57.165	57.552	0	0.063499	-0.00020356	NaN	10.183	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101520			32189	12886	18627	18628							0.09075286864992904
PFRVAPVL	8	Unmodified	_PFRVAPVL_					0	0	0		nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	449.779088	897.543623	0.075408	3.3917E-05	0.086247	3.8792E-05	0.16166	7.2709E-05	449.77913234406475	57.452	0.40897	57.435	57.197	57.606	-0.0172	0.034808	0.00020812	NaN	10.183	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179530			32190	12886	18627	18628							0.09075286864992904
PFSCLIEH	8	Unmodified	_PFSCLIEH_					0	0	0			REV__ENSG00000180917|ENST00000434935|CMTR2	REV__ENSG00000180917|ENST00000434935|CMTR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.79791259765625	2	473.228571	944.442588	-0.18364	-8.6903E-05	-2.6047	-0.0012326	-2.7883	-0.0013195	473.22748597770175	25.263	0.49443	25.232	25.021	25.515	-0.03141					33	17	3	0	0	0	0.33245	1	4081	4081		19.439	1.304	1	126110	+		32191	18124	18628	18629	39532	39532					-0.031855329000336496
PFSEMEGLIRI	11	Unmodified	_PFSEMEGLIRI_					0	0	0			REV__ENST00000372406.5_1_9:132898212-132898338:+|nuORF	REV__ENST00000372406.5_1_9:132898212-132898338:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8880920410156	3	431.228679	1290.66421	-0.15981	-6.8914E-05	0.95461	0.00041165	0.7948	0.00034274	431.2299552998443	33.286	0.36342	33.286	33.174	33.538	0					15	12	2	0	0	0	0.33202	1	6425	6425		2.8433	0	1	47166	+		32192	20411	18629	18630	39533	39533					0.03050282005642657
PFSEPSEF	8	Unmodified	_PFSEPSEF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.752685546875	2	470.208358	938.402163	0.31602	0.0001486	1.4649	0.00068881	1.7809	0.00083741	470.2090390345551	47.64	0.27832	47.64	47.493	47.771	0					11	9	2	0	0	0	0.34297	1	10827	10827		2.8892	0	1	146190			32193	5186	18630	18631	39534	39534					-0.06950176018801812
PFSGWCDGN	9	Unmodified	_PFSGWCDGN_					0	0	0		ENSG00000081277|ENST00000367324|PKP1;nc|ENSG00000081277|Q13835|PKP1	ENSG00000081277|ENST00000367324|PKP1	ENSG00000081277|ENST00000367324|PKP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2737731933594	2	491.68981	981.365066	0.43073	0.00021179	-0.010089	-4.9608E-06	0.42064	0.00020683	491.68986553574615	51.543	0.67023	51.543	51.271	51.941	0					50	24	3	0	0	0	0.25879	1	12038	12038		4.756	0.42677	1	995450			32194	1180	18631	18632	39535	39535					-0.12636170836219662
PFSHGAPGR	9	Unmodified	_PFSHGAPGR_					0	0	0		ENSG00000260220|ENST00000638797|CCDC187;nc|ENSG00000260220|A0A096LP49|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.9372253417969	2	463.235576	924.456599	0.11699	5.4195E-05	-1.4019	-0.0006494	-1.2849	-0.0005952	463.23476325919603	20.023	0.63069	19.908	19.579	20.209	-0.11592					54	21	3	0	0	0	0.25879	1	2502	2502		4.756	1.1595	1	217570			32195	8650	18632	18633	39536	39536					-0.008651193567175142
PFSKKNSSL	9	Unmodified	_PFSKKNSSL_					0	0	0		nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1;ENST00000376080.2_1_9:88272482-88307688:-|nuORF;ENST00000376081.8_1_9:88270186-88327448:-|nuORF;AGTPBP1|p.F394Lfs*13|1|0.17|ENSG00000135049|chr9:85646324-85646324|A/-|frameshift_variant	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2633972167969	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.159	1	66.159	65.659	66.659	0								0	0	0	0.22377	1	16544	16544		14.838	2.3067	1				32196	3841	18633	18634	39537	39537					0.04173456443231771
PFSLCYLR	8	Unmodified	_PFSLCYLR_					0	0	0			REV__ENST00000375147.7_1_9:100434815-100434899:+|nuORF	REV__ENST00000375147.7_1_9:100434815-100434899:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7929992675781	2	499.760038	997.505523	0.27106	0.00013546	1.2173	0.00060836	1.4884	0.00074382	500.2620490006876	59.466	0.56163	59.561	59.266	59.828	0.095093					26	19	2	0	0	0	0.31375	1	14427	14427		26.341	16.994	1	309160	+		32197	20472	18634	18635	39538	39538					0.006670328880204579
PFSLVESRL	9	Unmodified	_PFSLVESRL_					0	0	0		nc|ENSG00000137727|Q9P2F6-4|ARHGAP20;nc|ENSG00000137727|Q9P2F6-2|ARHGAP20;nc|ENSG00000137727|Q9P2F6-3|ARHGAP20;ENSG00000137727|ENST00000683387|ARHGAP20	nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	nc|ENSG00000137727|Q9P2F6-4|ARHGAP20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.33740234375	2	524.295299	1046.57605	0.27974	0.00014666	0.73655	0.00038617	1.0163	0.00053283	524.2956828099053	42.74	0.59266	42.832	42.581	43.173	0.091362					53	21	3	0	0	0	0.24913	1	9414	9414		12.532	0	1	662990			32198	4070	18635	18636	39539	39539					0.05462029477325814
PFTHFLAFF	9	Unmodified	_PFTHFLAFF_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3480834960938	2	563.789653	1125.56475	0.08428	4.7516E-05	-0.94138	-0.00053074	-0.8571	-0.00048322	563.7892103164977	46.453	0.40533	46.453	46.298	46.703	0					26	14	2	0	0	0	0.25291	1	10495	10495		9.3474	1.4373	1	318140			32199	4135	18636	18637	39540	39540					0.006992521738311552
PFTLQLKFIT	10	Unmodified	_PFTLQLKFIT_					0	0	0		ENST00000199389.10_1_7:6063872-6063926:-|nuORF	ENST00000199389.10_1_7:6063872-6063926:-|nuORF	ENST00000199389.10_1_7:6063872-6063926:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.860595703125	2	604.357899	1206.70125	0.48325	0.00029205	1.1221	0.00067818	1.6054	0.00097023	604.358307807921	91.329	0.26553	91.329	91.205	91.471	0					34	20	2	0	0	0	0.40943	1	24248	24248		3.5965	1.9439	1	219670			32200	8797	18637	18638	39541	39541					0.10616321613701984
PFTPELYV	8	Unmodified	_PFTPELYV_					0	0	0			REV__nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	REV__nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.25225830078125	2	483.252569	964.490584	-0.073239	-3.5393E-05	-0.12962	-6.2638E-05	-0.20286	-9.8031E-05	483.25238425208096	14.026	0.40396	13.96	13.802	14.206	-0.066068					29	13	3	0	0	0	0.46022	1	603	603		2.3027	1.6124	1	428500	+		32201	15191	18638	18639	39542	39542					0.006918642916730278
PFTPELYV	8	Unmodified	_PFTPELYV_					0	0	0			REV__nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	REV__nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	483.252569	964.490584	-0.073239	-3.5393E-05	-0.12962	-6.2638E-05	-0.20286	-9.8031E-05	483.25238425208096	14.026	0.40396	13.96	13.802	14.206	-0.066068	0.0062099	7.17E-05	NaN	2.3027	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428500	+		32202	15191	18638	18639							0.006918642916730278
PFTWSTSL	8	Unmodified	_PFTWSTSL_					0	0	0			REV__ENSG00000110427|ENST00000658780|KIAA1549L;REV__KIAA1549L|p.S551Hfs*97|1|0.3|ENSG00000110427|chr11:33544103-33544103|C/-|frameshift_variant	REV__ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.3076171875	2	469.734543	937.454533	-0.08896	-4.1787E-05	0.0027734	1.3028E-06	-0.086186	-4.0485E-05	469.7342572280842	61.457	0.54869	61.448	61.296	61.845	-0.0094566					30	19	2	0	0	0	0.30749	1	15130	15130		5.2307	5.2307	1	277200	+		32203	14669;22773	18639	18640	39543	39543					-0.016695928851959252
PFVDHVFTF	9	Unmodified	_PFVDHVFTF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.775634765625	2	554.776742	1107.53893	0.21951	0.00012178	-0.3084	-0.00017109	-0.088893	-4.9316E-05	554.7764495763744	69.685	2.1226	69.685	69.398	71.521	0					188	76	4	0	0	0	7.8756E-24	7	17586	17586;17634;17675;17726;17775;17819;17871		234.68	180.85	1	5034700			32204	2505	18640	18641	39544;39545;39546;39547;39548;39549;39550	39544					-0.010536420684275072
PFVDHVFTF	9	Unmodified	_PFVDHVFTF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.7760620117188	2	554.776742	1107.53893	0.2085	0.00011567	-0.0031419	-1.7431E-06	0.20536	0.00011393	554.7764952177522	69.669	1.9284	69.735	69.428	71.356	0.066048					177	68	5	0	0	0	7.8756E-24	6	17564	17564;17611;17656;17709;17759;17811		234.68	186.34	1	4868700			32205	2505	18640	18641	39551;39552;39553;39554;39555;39556	39551					-0.010536420684275072
PFVDHVFTF	9	Unmodified	_PFVDHVFTF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.7763061523438	2	554.776742	1107.53893	0.21158	0.00011738	-0.1243	-6.8957E-05	0.087287	4.8425E-05	554.7765675664485	69.741	1.5114	69.719	69.435	70.946	-0.022087					145	54	4	0	0	0	7.8756E-24	6	17584	17584;17628;17675;17725;17767;17828		234.68	182.42	1	5268700			32206	2505	18640	18641	39557;39558;39559;39560;39561;39562	39557					-0.010536420684275072
PFVDHVFTF	9	Unmodified	_PFVDHVFTF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3107299804688	2	554.776742	1107.53893	0.32579	0.00018074	0.70573	0.00039152	1.0315	0.00057226	555.2791782225935	73.168	1.0863	73.139	72.684	73.77	-0.029305					61	39	2	0	0	0	0.2322	1	18827	18827		20.454	5.8719	1	135850			32207	2505	18640	18641	39563	39563					-0.010536420684275072
PFVDHVFTF	9	Unmodified	_PFVDHVFTF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.7540893554688	2	554.776742	1107.53893	0.35559	0.00019727	2.3384	0.0012973	2.694	0.0014946	555.2801874038589	71.444	0.33432	71.417	71.236	71.57	-0.027275					28	11	4	0	0	0	0.1854	1	18186	18186		25.399	13.759	1	356700			32208	2505	18640	18641	39564	39564					-0.010536420684275072
PFVDHVFTF	9	Unmodified	_PFVDHVFTF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	554.776742	1107.53893	0.29944	0.00016612	1.5266	0.00084693	1.8261	0.0010131	555.2792127882893	73.154	1.1205	73.154	72.799	73.92	0	-0.0084576	0.00050408	NaN	20.454	59	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177250			32209	2505	18640	18641							-0.010536420684275072
PFVFLRVRP	9	Unmodified	_PFVFLRVRP_					0	0	0			REV__nc|ENSG00000236384|Q96M42|LINC00479	REV__nc|ENSG00000236384|Q96M42|LINC00479	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.3165893554688	2	565.845294	1129.67603	-0.179	-0.00010129	-1.1253	-0.00063672	-1.3043	-0.00073801	565.8442748694812	12.458	0.20795	12.39	12.226	12.434	-0.06806					10	6	2	0	0	0	0.26251	1	140	140		0.6015	0	1	25093	+		32210	23206	18641	18642	39565	39565					0.11638311601791429
PFVHWTSK	8	Unmodified	_PFVHWTSK_					0	0	0			REV__ENST00000464515.1_1_7:41729250-41730808:-|nuORF	REV__ENST00000464515.1_1_7:41729250-41730808:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.67169189453125	2	501.263802	1000.51305	0.078822	3.951E-05	-3.6255	-0.0018173	-3.5467	-0.0017778	501.7642622256634	15.512	0.45244	15.448	15.216	15.668	-0.064413					23	14	2	0	0	0	0.34353	1	1067	1067		4.756	0	1	83403	+		32211	15163	18642	18643	39566	39566					0.012815084799512988
PFVLSRPSYF	10	Unmodified	_PFVLSRPSYF_					0	0	0			REV__ENSG00000036473|ENST00000039007|OTC	REV__ENSG00000036473|ENST00000039007|OTC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.19036865234375	3	404.885241	1211.63389	-0.27836	-0.00011271	0.47541	0.00019249	0.19704	7.978E-05	404.88570322206397	30.693	0.28187	30.721	30.555	30.836	0.027157					12	9	2	0	0	0	0.32068	1	5627	5627		3.5871	0	1	69852	+		32212	13509	18643	18644	39567	39567					0.036542914027450024
PFVPNFLD	8	Unmodified	_PFVPNFLD_					0	0	0		nc|ENSG00000205045|Q6IEE8|SLFN12L;ENSG00000205045|ENST00000628453|SLFN12L;nc|ENSG00000205045|Q6IEE8-2|SLFN12L	nc|ENSG00000205045|Q6IEE8|SLFN12L	nc|ENSG00000205045|Q6IEE8|SLFN12L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.2908630371094	2	474.744911	947.475269	0.13767	6.5357E-05	-0.22348	-0.0001061	-0.085812	-4.0739E-05	474.74483081938456	73.663	0.30143	73.716	73.47	73.771	0.052368					13	10	2	0	0	0	0.34218	1	18789	18789		9.3474	0	1	84382			32213	8267	18644	18645	39568	39568					-0.0005700250553672959
PFVQLRPLS	9	Unmodified	_PFVQLRPLS_					0	0	0		ENSG00000116685|ENST00000376572|KIAA2013;nc|ENSG00000116685|Q8IYS2-2|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3040771484375	2	528.813659	1055.61277	0.31802	0.00016817	3.5413	0.0018727	3.8593	0.0020409	528.8152824606836	41.252	0.59651	41.252	40.875	41.471	0					36	19	2	0	0	0	0.23784	1	8760	8760		13.906	0	1	332880			32214	2740	18645	18646	39569	39569					0.08718326093890028
PFVQLRPLS	9	Unmodified	_PFVQLRPLS_					0	0	0		ENSG00000116685|ENST00000376572|KIAA2013;nc|ENSG00000116685|Q8IYS2-2|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3040771484375	2	528.813659	1055.61277	0.58274	0.00030816	1.5371	0.00081285	2.1199	0.001121	528.8147087596952	40.61	0.67873	40.61	40.307	40.986	0					34	23	2	0	0	0	0.23784	1	8760	8760		13.906	0	1	292860			32215	2740	18645	18646	39570	39570					0.08718326093890028
PFWGTPFVP	9	Unmodified	_PFWGTPFVP_					0	0	0			REV__ENST00000478085.5_1_22:40803992-40804918:+|nuORF	REV__ENST00000478085.5_1_22:40803992-40804918:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.28515625	2	524.268553	1046.52255	0.48201	0.0002527	-0.1885	-9.8822E-05	0.29351	0.00015388	524.2683563907564	43.224	0.92234	43.224	42.871	43.793	0					76	33	3	0	0	0	0.21303	1	9465	9465		21.747	4.8044	1	668060	+		32216	21444	18646	18647	39571	39571					0.001152767654730269
PFWGTPFVP	9	Unmodified	_PFWGTPFVP_					0	0	0			REV__ENST00000478085.5_1_22:40803992-40804918:+|nuORF	REV__ENST00000478085.5_1_22:40803992-40804918:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2852172851562	2	524.268553	1046.52255	0.3129	0.00016404	-0.73485	-0.00038526	-0.42195	-0.00022121	524.2684464547259	42.577	0.4838	42.663	42.407	42.891	0.085197					45	17	3	0	0	0	0.20344	1	9327	9327		23.148	6.0355	1	693250	+		32217	21444	18646	18647	39572	39572					0.001152767654730269
PFWGTPFVP	9	Unmodified	_PFWGTPFVP_					0	0	0			REV__ENST00000478085.5_1_22:40803992-40804918:+|nuORF	REV__ENST00000478085.5_1_22:40803992-40804918:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2849731445312	2	524.268553	1046.52255	0.54375	0.00028507	-0.37393	-0.00019604	0.16982	8.903E-05	524.2683594356539	43.029	0.7411	43.114	42.834	43.575	0.085197					61	26	3	0	0	0	0.21303	1	9382	9382		21.747	3.6003	1	815180	+		32218	21444	18646	18647	39573	39573					0.001152767654730269
PFYAGRRVVI	10	Unmodified	_PFYAGRRVVI_					0	0	0		ENSG00000146038|ENST00000378454|DCDC2	ENSG00000146038|ENST00000378454|DCDC2	ENSG00000146038|ENST00000378454|DCDC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3435668945312	2	589.345658	1176.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.94	1	113.92	113.42	114.42	-0.019096								0	0	0	0.38126	1	29603	29603		1.6526	0.17072	1				32219	4684	18647	18648	39574	39574					0.09549106250847217
PFYDKYKK	8	Unmodified	_PFYDKYKK_					0	0	0			REV__ENSG00000165509|ENST00000298296|MAGEC3	REV__ENSG00000165509|ENST00000298296|MAGEC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3167724609375	2	544.792392	1087.57023	0.066461	3.6207E-05	0.70542	0.00038431	0.77188	0.00042051	545.2949930245422	115.72	0.14764	115.72	115.67	115.82	0					27	18	2	0	0	0	0.34437	1	29995	29995		0.69038	0	1	21150	+		32220	17241	18648	18649	39575	39575					0.029949309656331025
PFYDKYKK	8	Unmodified	_PFYDKYKK_					0	0	0			REV__ENSG00000165509|ENST00000298296|MAGEC3	REV__ENSG00000165509|ENST00000298296|MAGEC3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	544.792392	1087.57023	0.5533	0.00030144	0.71475	0.00038939	1.2681	0.00069083	544.7919683591989	115.71	0.5406	115.73	115.58	116.13	0.018738	-0.04973	1.8316E-05	NaN	0.69038	99	66	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27233	+		32221	17241	18648	18649							0.029949309656331025
PFYDVQIF	8	Unmodified	_PFYDVQIF_					0	0	0			REV__ENSG00000108797|ENST00000264638|CNTNAP1	REV__ENSG00000108797|ENST00000264638|CNTNAP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7742919921875	2	514.758018	1027.50148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.479	1	73.449	72.949	73.949	-0.029305								0	0	0	0.34229	1	18768	18768		18.135	3.5533	1		+		32222	14607	18649	18650	39576	39576					-0.01116733334060882
PFYPRIVD	8	Unmodified	_PFYPRIVD_					0	0	0		ENSG00000151779|ENST00000281513|NBAS;nc|ENSG00000151779|A2RRP1-2|NBAS;ENST00000485694.1_1_2:15307174-15319276:-|nuORF	ENSG00000151779|ENST00000281513|NBAS	ENSG00000151779|ENST00000281513|NBAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.3064880371094	2	503.77146	1005.52837	0.57604	0.00029019	0.1822	9.1785E-05	0.75824	0.00038198	503.77154657213754	56.549	0.68746	56.628	56.41	57.097	0.078674					43	25	2	0	0	0	0.32435	1	13653	13653		23.148	23.148	1	397080			32223	4984	18650	18651	39577	39577					0.02582375277143001
PFYRGERITF	10	Unmodified	_PFYRGERITF_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.2288818359375	3	429.227779	1284.66151	0.23319	0.00010009	0.85805	0.0003683	1.0912	0.00046839	429.2280232558041	47.103	1.0088	47.103	46.84	47.849	0					105	35	4	0	0	0	0.041185	2	10646	10646;10678		60.943	36.213	1	3392900			32224	1820	18651	18652	39578;39579	39578					0.030561946629632075
PFYRGERITF	10	Unmodified	_PFYRGERITF_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.2288513183594	3	429.227779	1284.66151	0.43691	0.00018753	1.5867	0.00068104	2.0236	0.00086858	429.2283101478086	46.959	1.4269	47.014	46.355	47.782	0.054375					111	38	4	0	0	0	0.041185	4	10629	10585;10629;10661;10668		60.943	40.957	1	2853200			32225	1820	18651	18652	39580;39581;39582;39583	39581					0.030561946629632075
PFYTLSFYVRH	11	Unmodified	_PFYTLSFYVRH_					0	0	0			REV__ENST00000458578.6_1_22:21976298-21976487:+|nuORF	REV__ENST00000458578.6_1_22:21976298-21976487:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.2928161621094	3	477.24695	1428.71902	0.36148	0.00017251	-0.71859	-0.00034294	-0.35711	-0.00017043	477.24666354445174	38.627	1.2444	38.724	38.235	39.479	0.097527					98	44	3	0	0	0	0.33303	1	8283	8283		1.1098	0	1	366410	+		32226	21190	18652	18653	39584	39584					0.02181036868546471
PFYWMRVIL	9	Unmodified	_PFYWMRVIL_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.5654296875	3	408.89145	1223.65252	0.18838	7.7027E-05	1.2378	0.00050613	1.4262	0.00058316	408.8921030606437	54.227	0.57152	54.227	53.834	54.405	0					27	20	2	0	0	0	0.259	1	12903	12903		2.7352	0	1	169040			32227	732	18653	18654	39585	39585					0.04964129772974957
PFYYIWQRL	9	Unmodified	_PFYYIWQRL_					0	0	0			REV__nc|ENSG00000095110|Q8N323-2|NXPE1	REV__nc|ENSG00000095110|Q8N323-2|NXPE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.2287902832031	3	429.229119	1284.66553	0.0041443	1.7788E-06	-0.69207	-0.00029706	-0.68792	-0.00029528	429.2286489702012	46.877	1.1226	46.929	46.655	47.777	0.052574					124	41	4	0	0	0	0.25112	1	10571	10571		16.149	3.2932	1	2696100	+		32228	14096	18654	18655	39586	39586					0.03458284156704394
PGAAALLFLI	10	Unmodified	_PGAAALLFLI_					0	0	0		ENST00000471894.1_1_1:31441147-31447662:-|nuORF	ENST00000471894.1_1_1:31441147-31447662:-|nuORF	ENST00000471894.1_1_1:31441147-31447662:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.3079528808594	2	493.307678	984.600803	0.13276	6.5493E-05	0.29478	0.00014542	0.42754	0.00021091	493.3078323097417	96.171	0.79167	96.171	95.896	96.688	0					209	75	4	0	0	0	0.20432	1	25649	25649		32.117	3.6301	1	1063200			32229	10883	18655	18656	39587	39587					0.10788709350697445
PGAAALLFLI	10	Unmodified	_PGAAALLFLI_					0	0	0		ENST00000471894.1_1_1:31441147-31447662:-|nuORF	ENST00000471894.1_1_1:31441147-31447662:-|nuORF	ENST00000471894.1_1_1:31441147-31447662:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.30792236328125	2	493.307678	984.600803	0.25875	0.00012764	0.13202	6.5125E-05	0.39076	0.00019277	493.3078066383766	96.034	0.68216	96.111	95.848	96.531	0.077408					190	62	4	0	0	0	0.13612	1	25661	25661		40.449	4.4044	1	1555600			32230	10883	18655	18656	39588	39588					0.10788709350697445
PGAAALLFLI	10	Unmodified	_PGAAALLFLI_					0	0	0		ENST00000471894.1_1_1:31441147-31447662:-|nuORF	ENST00000471894.1_1_1:31441147-31447662:-|nuORF	ENST00000471894.1_1_1:31441147-31447662:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.30828857421875	2	493.307678	984.600803	0.39254	0.00019364	0.22227	0.00010965	0.61481	0.00030329	493.3077835082482	96.183	0.67662	96.179	95.897	96.574	-0.0038147					180	66	3	0	0	0	0.13612	1	25670	25670		40.449	11.962	1	1261000			32231	10883	18655	18656	39589	39589					0.10788709350697445
PGAAPAPRRA	10	Unmodified	_PGAAPAPRRA_					0	0	0			REV__ENST00000360862.9_2_16:3534932-3535735:+|nuORF	REV__ENST00000360862.9_2_16:3534932-3535735:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7641906738281	2	482.277775	962.540997	-0.097291	-4.6922E-05	-1.9318	-0.00093165	-2.0291	-0.00097858	482.2766080567416	13.209	0.32449	13.109	12.924	13.249	-0.099291					18	10	3	0	0	0	0.32009	1	346	346		3.9444	0	1	60600	+		32232	20267	18656	18657	39590	39590					0.05822831460022826
PGAAPAPRRA	10	Unmodified	_PGAAPAPRRA_					0	0	0			REV__ENST00000360862.9_2_16:3534932-3535735:+|nuORF	REV__ENST00000360862.9_2_16:3534932-3535735:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7642822265625	2	482.277775	962.540997	-0.13024	-6.281E-05	-2.1733	-0.0010481	-2.3035	-0.0011109	482.2768974760406	13.225	0.42286	13.158	12.936	13.359	-0.067495					23	14	3	0	0	0	0.32112	1	328	328		1.8442	0	1	50262	+		32233	20267	18656	18657	39591	39591					0.05822831460022826
PGAGKSTFLK	10	Unmodified	_PGAGKSTFLK_					0	0	0		nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF;ENSG00000039650|ENST00000322344|PNKP;ENST00000594661.5_1_19:50364507-50367546:-|nuORF;ENST00000601816.3_1_19:50365027-50365457:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP	nc|ENSG00000039650|Q96T60-2|PNKP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.3007507324219	2	503.290017	1004.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.123	1	19.005	18.505	19.505	-0.11739								0	0	0	0.35788	1	2141	2141		11.495	2.7493	1				32234	599	18657	18658	39592	39592					0.0633804682288428
PGAGQKHL	8	Unmodified	_PGAGQKHL_					0	0	0			REV__ENSG00000060709|ENST00000690449|RIMBP2	REV__ENSG00000060709|ENST00000690449|RIMBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.565185546875	2	404.22722	806.439886	-0.36525	-0.00014765	0.9131	0.0003691	0.54784	0.00022145	404.22749255610006	34.244	0.6434	34.311	34.021	34.664	0.0667					54	22	3	0	0	0	0.34046	1	6817	6817		14.582	2.0501	1	760260	+		32235	13620	18658	18659	39593	39593					0.02892379757327035
PGAHPPATV	9	Unmodified	_PGAHPPATV_					0	0	0		ENST00000341259.6_1_12:111843818-111843890:+|nuORF	ENST00000341259.6_1_12:111843818-111843890:+|nuORF	ENST00000341259.6_1_12:111843818-111843890:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.2580261230469	2	423.727052	845.439552	0.13179	5.5844E-05	-0.10233	-4.3358E-05	0.029466	1.2486E-05	423.7269637938623	26.539	0.71084	26.516	26.236	26.947	-0.022236					49	24	3	0	0	0	0.25526	1	4504	4504		7.9102	0	1	279710			32236	9521	18659	18660	39594	39594					0.010649600374563306
PGALEGRF	8	Unmodified	_PGALEGRF_					0	0	0			REV__ENSG00000205922|ENST00000382349|ONECUT3	REV__ENSG00000205922|ENST00000382349|ONECUT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2578430175781	2	423.727052	845.439552	-0.15162	-6.4246E-05	0.16269	6.8937E-05	0.01107	4.6908E-06	423.72709448303635	26.558	0.68185	26.558	26.271	26.953	0					52	23	3	0	0	0	0.34218	1	4493	4493		9.3474	0	1	242380	+		32237	19009	18660	18661	39595	39595					0.010649600374676993
PGAPHLSAP	9	Unmodified	_PGAPHLSAP_					0	0	0			REV__ENST00000517791.1_1_5:149785806-149786884:-|nuORF	REV__ENST00000517791.1_1_5:149785806-149786884:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.2581481933594	2	423.727052	845.439552	-0.1552	-6.5764E-05	0.24031	0.00010183	0.085109	3.6063E-05	423.7270852212734	26.555	0.70802	26.516	26.29	26.998	-0.038671					47	24	3	0	0	0	0.23783	1	4478	4478		12.532	0	1	244630	+		32238	21857	18661	18662	39596	39596					0.010649600374563306
PGARELPLL	9	Unmodified	_PGARELPLL_					0	0	0		ENSG00000101004|ENST00000278886|NINL;NINL|p.N1098Tfs*27|1|0.27|ENSG00000101004|chr20:25470051-25470051|T/-|frameshift_variant	ENSG00000101004|ENST00000278886|NINL	ENSG00000101004|ENST00000278886|NINL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.76422119140625	2	483.292559	964.570566	-0.12652	-6.1147E-05	0.17145	8.2861E-05	0.044929	2.1714E-05	483.292680106593	13.132	0.16916	13.132	13.031	13.2	0					9	5	2	0	0	0	0.26168	1	320	320		1.8442	0	1	32719			32239	1658	18662	18663	39597	39597					0.08686350685513844
PGARELPLL	9	Unmodified	_PGARELPLL_					0	0	0		ENSG00000101004|ENST00000278886|NINL;NINL|p.N1098Tfs*27|1|0.27|ENSG00000101004|chr20:25470051-25470051|T/-|frameshift_variant	ENSG00000101004|ENST00000278886|NINL	ENSG00000101004|ENST00000278886|NINL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7641906738281	2	483.292559	964.570566	-0.10084	-4.8733E-05	0.372	0.00017978	0.27116	0.00013105	483.29269938187315	13.213	0.23805	13.114	13.011	13.249	-0.099291					12	7	2	0	0	0	0.26031	1	346	346		3.5965	0.60125	1	31668			32240	1658	18662	18663	39598	39598					0.08686350685513844
PGARPATIL	9	Unmodified	_PGARPATIL_					0	0	0		ENST00000493650.5_1_13:113841524-113841620:-|nuORF	ENST00000493650.5_1_13:113841524-113841620:-|nuORF	ENST00000493650.5_1_13:113841524-113841620:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.7878723144531	2	448.271627	894.528701	0.19572	8.7735E-05	-0.74884	-0.00033568	-0.55312	-0.00024795	448.2712906075268	35.535	0.65506	35.617	35.325	35.98	0.082355					36	23	2	0	0	0	0.25066	1	7223	7223		7.2892	2.5332	1	523400			32241	11203	18663	18664	39599	39599					0.07721794997007692
PGASQLQI	8	Unmodified	_PGASQLQI_					0	0	0		ENST00000554930.5_1_14:37667225-37854725:+|nuORF	ENST00000554930.5_1_14:37667225-37854725:+|nuORF	ENST00000554930.5_1_14:37667225-37854725:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.535400390625	2	407.226885	812.439217	-0.20994	-8.5494E-05	-0.60542	-0.00024654	-0.81537	-0.00033204	407.22670776435325	18.658	0.62104	18.541	18.325	18.946	-0.11739					33	21	2	0	0	0	0.32886	1	2045	2045		15.847	0	1	60415			32242	11840	18664	18665	39600	39600					0.025495403176250875
PGASQLQI	8	Unmodified	_PGASQLQI_					0	0	0		ENST00000554930.5_1_14:37667225-37854725:+|nuORF	ENST00000554930.5_1_14:37667225-37854725:+|nuORF	ENST00000554930.5_1_14:37667225-37854725:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	407.226885	812.439217	-0.24281	-9.8877E-05	-0.8194	-0.00033368	-1.0622	-0.00043256	407.22662120997234	18.594	0.68254	18.594	18.269	18.952	0	0.026703	-7.4829E-05	NaN	15.847	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77101			32243	11840	18664	18665							0.025495403176250875
PGAVEPLEL	9	Unmodified	_PGAVEPLEL_					0	0	0			REV__ENST00000307296.7_1_3:33840063-33840171:+|nuORF	REV__ENST00000307296.7_1_3:33840063-33840171:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.7557678222656	2	462.755475	923.496398	0.030333	1.4037E-05	0.1629	7.5384E-05	0.19324	8.9421E-05	462.7554633163664	63.075	1.0586	63.075	62.637	63.695	0					69	38	2	0	0	0	0.029841	3	15550	15550;15644;15715		60.39	4.8341	1	1060300	+		32244	19867	18665	18666	39601;39602;39603	39601					0.031589628033202644
PGAVEPLEL	9	Unmodified	_PGAVEPLEL_					0	0	0			REV__ENST00000307296.7_1_3:33840063-33840171:+|nuORF	REV__ENST00000307296.7_1_3:33840063-33840171:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.75543212890625	2	462.755475	923.496398	0.10881	5.0351E-05	-0.77966	-0.00036079	-0.67085	-0.00031044	462.7554111777032	62.926	1.0264	63.021	62.688	63.714	0.095722					88	36	4	0	0	0	0.029841	2	15570	15570;15620		60.39	1.7107	1	968090	+		32245	19867	18665	18666	39604;39605	39604					0.031589628033202644
PGAVEPLEL	9	Unmodified	_PGAVEPLEL_					0	0	0			REV__ENST00000307296.7_1_3:33840063-33840171:+|nuORF	REV__ENST00000307296.7_1_3:33840063-33840171:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.7554931640625	2	462.755475	923.496398	0.16811	7.7793E-05	-0.71662	-0.00033162	-0.54851	-0.00025383	462.7553941256863	63.029	1.0952	63.02	62.675	63.77	-0.0085564					94	39	4	0	0	0	0.029841	3	15577	15528;15577;15628		60.39	1.7107	1	1015200	+		32246	19867	18665	18666	39606;39607;39608	39607					0.031589628033202644
PGAVEPLEL	9	Unmodified	_PGAVEPLEL_					0	0	0			REV__ENST00000307296.7_1_3:33840063-33840171:+|nuORF	REV__ENST00000307296.7_1_3:33840063-33840171:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	462.755475	923.496398	0.16811	7.7793E-05	-0.71662	-0.00033162	-0.54851	-0.00025383	462.7553941256863	63.029	1.0952	63.02	62.675	63.77	-0.0085564	-0.00044307	2.9807E-05	NaN	60.39	94	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1015200	+		32247	19867	18665	18666							0.031589628033202644
PGCILVLLEES	11	Unmodified	_PGCILVLLEES_					0	0	0			REV__ENSG00000127989|ENST00000351870|MTERF1	REV__ENSG00000127989|ENST00000351870|MTERF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8339233398438	2	586.815207	1171.61586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.507	1	80.48	79.98	80.98	-0.026825								0	0	0	0.34476	1	20909	20909		9.3831	1.2276	1		+		32248	15359	18666	18667	39609	39609					0.036917883657451966
PGERARSTL	9	Unmodified	_PGERARSTL_					0	0	0		ENSG00000128271|ENST00000337539|ADORA2A	ENSG00000128271|ENST00000337539|ADORA2A	ENSG00000128271|ENST00000337539|ADORA2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.772216796875	2	493.772522	985.530492	0.029702	1.4666E-05	1.166	0.00057572	1.1957	0.00059039	493.772750983058	14.554	0.55558	14.488	14.289	14.845	-0.066067					35	19	2	0	0	0	0.22215	1	743	743		20.415	2.2682	1	324980			32249	3354	18667	18668	39610	39610					0.03714804014953188
PGERARSTL	9	Unmodified	_PGERARSTL_					0	0	0		ENSG00000128271|ENST00000337539|ADORA2A	ENSG00000128271|ENST00000337539|ADORA2A	ENSG00000128271|ENST00000337539|ADORA2A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.772522	985.530492	0.081557	4.0271E-05	1.0242	0.00050571	1.1057	0.00054598	493.7726337986942	14.413	0.53953	14.413	14.249	14.789	0	-0.040609	-7.4845E-05	NaN	20.415	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	421670			32250	3354	18667	18668							0.03714804014953188
PGGECTYSGNA	11	Unmodified	_PGGECTYSGNA_					0	0	0			REV__ENST00000487969.1_1_22:50316862-50317045:+|nuORF	REV__ENST00000487969.1_1_22:50316862-50317045:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8138427734375	2	528.208563	1054.40257	0.68959	0.00036425	1.1804	0.0006235	1.87	0.00098775	528.2084991720113	78.459	0.11374	78.517	78.414	78.528	0.058151					5	3	2	0	0	0	0.33149	1	20260	20260		5.2969	2.4077	1	55555	+		32251	21569	18668	18669	39611	39611					-0.1224512436126588
PGGGAAAA	8	Unmodified	_PGGGAAAA_					0	0	0		ENSG00000123095|ENST00000242728|BHLHE41;ENST00000393606.7_1_17:42295651-42297108:-|nuORF;ENST00000409016.8_1_2:99061337-99136504:+|nuORF	ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7723999023438	1	571.283451	570.276175	0.21851	0.00012483	-3.7072	-0.0021179	-3.4887	-0.001993	571.2764293767814	80.166	0.25766	80.166	80.064	80.322	0					12	8	2	0	0	0	0.34445	1	20832	20832		0	0	1	81402			32252	3086	18669	18670	39612	39612					-0.02615218013579579
PGGGHAGS	8	Unmodified	_PGGGHAGS_					0	0	0			REV__ENST00000494955.1_1_20:44596870-44597092:-|nuORF	REV__ENST00000494955.1_1_20:44596870-44597092:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	639.2842407226562	1	639.284514	638.277237	0.2591	0.00016564	0.061728	3.9462E-05	0.32083	0.0002051	639.2845966648079	81.42	1.3339	81.489	80.752	82.086	0.068993					100	62	2	0	0	0	0.46461	1	21173	21173		0.79363	0	1	202140	+		32253	21656	18670	18671	39613	39613					-0.056370036446651284
PGGGHAGS	8	Unmodified	_PGGGHAGS_					0	0	0			REV__ENST00000494955.1_1_20:44596870-44597092:-|nuORF	REV__ENST00000494955.1_1_20:44596870-44597092:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		1	639.284514	638.277237	0.2591	0.00016564	0.061728	3.9462E-05	0.32083	0.0002051	639.2845966648079	81.42	1.3339	81.489	80.752	82.086	0.068993	0.0023641	0.00013281	NaN	0.79363	100	62	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202140	+		32254	21656	18670	18671							-0.056370036446651284
PGGGHAGS	8	Unmodified	_PGGGHAGS_					0	0	0			REV__ENST00000494955.1_1_20:44596870-44597092:-|nuORF	REV__ENST00000494955.1_1_20:44596870-44597092:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		1	639.284514	638.277237	0.55715	0.00035618	-0.36832	-0.00023546	0.18883	0.00012072	639.284315557719	81.508	1.4585	81.484	80.762	82.22	-0.02404	-0.0023641	-0.00014211	NaN	0.79363	85	61	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212140	+		32255	21656	18670	18671							-0.056370036446651284
PGGGSPGG	8	Unmodified	_PGGGSPGG_					0	0	0			REV__ENSG00000105723|ENST00000222330|GSK3A	REV__ENSG00000105723|ENST00000222330|GSK3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.3406372070312	1	585.262716	584.255439	0.554	0.00032424	1.6283	0.000953	2.1823	0.0012772	585.2638460852512	45.755	0.29008	45.82	45.753	46.043	0.065048					12	9	2	0	0	0	0.3439	1	10292	10292		2.8892	0	1	256070	+		32256	14483	18671	18672	39614	39614					-0.05331808393225401
PGGRGPPY	8	Unmodified	_PGGRGPPY_					0	0	0			REV__ENSG00000125835|ENST00000381342|SNRPB	REV__ENSG00000125835|ENST00000381342|SNRPB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	400.704345703125	2	400.70612	799.397687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.008	1	91.099	90.599	91.599	0.090668								0	0	0	0.37724	1	24138	24138		2.3027	0	1		+		32257	15286	18672	18673	39615	39615					-0.010035956510591859
PGHPLPLGL	9	Unmodified	_PGHPLPLGL_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.76300048828125	2	450.76872	899.522887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.06	1	77.06	76.56	77.56	0								0	0	0	0.20509	1	19872	19872		20.871	3.9289	1				32258	7872	18673	18674	39616	39616					0.06910696485329026
PGHPLPLGL	9	Unmodified	_PGHPLPLGL_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.762939453125	2	450.76872	899.522887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.029	1	77.085	76.585	77.585	0.055412								0	0	0	0.20509	1	19855	19855		20.871	0	1				32259	7872	18673	18674	39617	39617					0.06910696485329026
PGHYNVSEAQ	10	Unmodified	_PGHYNVSEAQ_					0	0	0		ENSG00000163116|ENST00000295268|STPG2	ENSG00000163116|ENST00000295268|STPG2	ENSG00000163116|ENST00000295268|STPG2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2642211914062	2	551.25162	1100.48869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.214	1	38.305	37.805	38.805	0.090881								0	0	0	0.33404	1	7946	7946		21.537	1.0834	1				32260	5649	18674	18675	39618	39618					-0.05753796464250627
PGIALRMASL	10	Unmodified	_PGIALRMASL_					0	0	0		Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|46|1|anti-sense	Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|46|1|anti-sense	Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|46|1|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.810791015625	2	514.799694	1027.58484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.432	1	62.529	62.029	63.029	0.096985								0	0	0	0.35754	1	15395	15395		11.64	0	1				32261	12388	18675	18676	39619	39619					0.07214679842149962
PGIKKKFFFV	10	Unmodified	_PGIKKKFFFV_					0	0	0			REV__ENST00000560723.5_1_15:81616080-81616440:-|nuORF	REV__ENST00000560723.5_1_15:81616080-81616440:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.8732299804688	2	605.870977	1209.7274	0.55556	0.0003366	0.82372	0.00049907	1.3793	0.00083567	605.8720242661716	90.079	1.2483	90.17	89.604	90.852	0.090675					263	98	4	0	0	0	0.40992	1	23770	23770		1.6526	0	1	1231200	+		32262	22298	18676	18677	39620	39620					0.13092635575821987
PGKGARTASL	10	Unmodified	_PGKGARTASL_					0	0	0		ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.27734375	2	479.277441	956.540328	0.079124	3.7922E-05	-0.27951	-0.00013396	-0.20038	-9.6039E-05	479.2771335875603	76.592	0.79053	76.646	76.189	76.98	0.053413					76	27	3	0	0	0	0.39009	1	19592	19592		5.2969	0	1	653680			32263	6292	18677	18678	39621	39621					0.06031992020314192
PGKGARTASL	10	Unmodified	_PGKGARTASL_					0	0	0		ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2775573730469	2	479.277441	956.540328	0.44211	0.0002119	-0.56779	-0.00027213	-0.12567	-6.0233E-05	479.2769851874779	77.247	2.5126	77.303	76.922	79.434	0.055412					157	97	3	0	0	0	0.39009	1	19900	19900		5.2969	0	1	827700			32264	6292	18677	18678	39622	39622					0.06031992020314192
PGKGPGRR	8	Unmodified	_PGKGPGRR_					0	0	0			REV__ENSG00000113905|ENST00000232003|HRG	REV__ENSG00000113905|ENST00000232003|HRG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.7460021972656	2	412.746111	823.477669	0.22009	9.0841E-05	-0.26421	-0.00010905	-0.044124	-1.8212E-05	412.74600325622873	74.882	2.0851	74.882	74.225	76.31	0					183	74	4	0	0	0	0.45169	3	19181	19181;19233;19285		5.2307	0	1	13466000	+		32265	14822	18678	18679	39623;39624;39625	39623					0.058868907427950035
PGKGPGRR	8	Unmodified	_PGKGPGRR_					0	0	0			REV__ENSG00000113905|ENST00000232003|HRG	REV__ENSG00000113905|ENST00000232003|HRG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.7459716796875	2	412.746111	823.477669	0.24791	0.00010232	-0.33181	-0.00013695	-0.083899	-3.4629E-05	412.74597539619396	74.779	1.924	74.831	74.236	76.16	0.052361					189	69	4	0	0	0	0.45169	4	19130	19130;19177;19227;19279		5.2307	0	1	13167000	+		32266	14822	18678	18679	39626;39627;39628;39629	39626					0.058868907427950035
PGKGPGRR	8	Unmodified	_PGKGPGRR_					0	0	0			REV__ENSG00000113905|ENST00000232003|HRG	REV__ENSG00000113905|ENST00000232003|HRG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.7460021972656	2	412.746111	823.477669	0.4772	0.00019696	-0.92468	-0.00038166	-0.44748	-0.0001847	412.745874720852	77.348	1.3605	77.403	76.726	78.086	0.05542					114	48	4	0	0	0	0.46491	1	19917	19917		0.69038	0	1	831290	+		32267	14822	18678	18679	39630	39630					0.058868907427950035
PGKGPGRR	8	Unmodified	_PGKGPGRR_					0	0	0			REV__ENSG00000113905|ENST00000232003|HRG	REV__ENSG00000113905|ENST00000232003|HRG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.74603271484375	2	412.746111	823.477669	0.28315	0.00011687	-0.13557	-5.5956E-05	0.14758	6.0914E-05	412.74603329770355	72.153	0.89291	72.126	71.793	72.686	-0.027275					66	31	3	0	0	0	0.45169	1	18323	18323		5.2307	0	1	594550	+		32268	14822	18678	18679	39631	39631					0.058868907427950035
PGKGPGRR	8	Unmodified	_PGKGPGRR_					0	0	0			REV__ENSG00000113905|ENST00000232003|HRG	REV__ENSG00000113905|ENST00000232003|HRG	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	412.746111	823.477669	0.23456	9.6814E-05	-0.69624	-0.00028737	-0.46168	-0.00019055	412.7459988271749	77.359	1.9107	77.359	76.338	78.249	0	-0.044682	0.00021519	NaN	0.69038	170	70	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	745270	+		32269	14822	18678	18679							0.058868907427950035
PGKGPGRR	8	Unmodified	_PGKGPGRR_					0	0	0			REV__ENSG00000113905|ENST00000232003|HRG	REV__ENSG00000113905|ENST00000232003|HRG	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	412.746111	823.477669	0.4772	0.00019696	-0.92468	-0.00038166	-0.44748	-0.0001847	412.745874720852	77.348	1.3605	77.403	76.726	78.086	0.05542	-0.00055929	2.6613E-05	NaN	0.69038	114	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	831290	+		32270	14822	18678	18679							0.058868907427950035
PGKGPGRR	8	Unmodified	_PGKGPGRR_					0	0	0			REV__ENSG00000113905|ENST00000232003|HRG	REV__ENSG00000113905|ENST00000232003|HRG	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	412.746111	823.477669	0.59089	0.00024389	-1.1297	-0.00046629	-0.53885	-0.00022241	412.7458379273168	77.48	2.4951	77.449	76.19	78.685	-0.031334	0.045241	-0.00014266	NaN	0.69038	174	92	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	735720	+		32271	14822	18678	18679							0.058868907427950035
PGKLKSFLL	9	Unmodified	_PGKLKSFLL_					0	0	0			REV__ENST00000555232.5_1_14:21549679-21554039:+|nuORF	REV__ENST00000555232.5_1_14:21549679-21554039:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.6343994140625	2	501.820953	1001.62735	0.21391	0.00010734	0.44638	0.000224	0.66029	0.00033134	501.8211906042214	96.108	0.35056	96.185	95.962	96.313	0.077408					48	30	2	0	0	0	0.25879	1	25654	25654		4.756	0	1	95322	+		32272	17266	18679	18680	39632	39632					0.1266039824205336
PGKLLQLTVLM	11	Unmodified	_PGKLLQLTVLM_					0	0	0			REV__ENST00000434127.2_1_5:141694714-141704471:-|nuORF	REV__ENST00000434127.2_1_5:141694714-141704471:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8726806640625	2	606.872859	1211.73117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.44	1	111.44	110.94	111.94	0								0	0	0	0.38126	1	28982	28982		1.1933	0.50296	1		+		32273	20977	18680	18681	39633	39633					0.13376937287375767
PGKNKTVR	8	Unmodified	_PGKNKTVR_					0	0	0			REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.27447509765625	2	450.274701	898.534849	0.39145	0.00017626	-0.41724	-0.00018787	-0.025788	-1.1612E-05	450.2744348406221	82.801	1.3799	82.801	82.358	83.738	0					151	51	4	0	0	0	0.46022	2	21817	21817;21835		2.3027	0	1	11029000	+		32274	21068	18681	18682	39634;39635	39634					0.08152313228504227
PGKQIKTPVEV	11	Unmodified	_PGKQIKTPVEV_					0	0	0			REV__nc|ENSG00000286095|A0A087WV53|SPEGNB	REV__nc|ENSG00000286095|A0A087WV53|SPEGNB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3583374023438	2	598.355888	1194.69722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.428	1	95.425	94.925	95.925	-0.0038147								0	0	0	0.37609	1	25492	25492		2.4985	0.65425	1		+		32275	23242	18682	18683	39636	39636					0.10766232119999586
PGKRATRG	8	Unmodified	_PGKRATRG_					0	0	0			REV__ENST00000457484.6_1_7:1624903-1627631:+|nuORF	REV__ENST00000457484.6_1_7:1624903-1627631:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.7511291503906	2	421.751393	841.488233	0.070738	2.9834E-05	-0.15315	-6.459E-05	-0.08241	-3.4756E-05	421.7513014375822	67.968	2.1611	68.046	67.515	69.676	0.078041					116	77	3	0	0	0	0.45307	1	17214	17214		4.756	0	1	550770	+		32276	21015	18683	18684	39637	39637					0.06114873397223164
PGLLIVPQSVQ	11	Unmodified	_PGLLIVPQSVQ_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8447265625	2	575.845156	1149.67576	0.40201	0.00023149	-2.3683	-0.0013638	-1.9663	-0.0011323	575.8432071858671	91.653	0.56023	91.654	91.255	91.815	0.00046539					65	36	2	0	0	0	0.44192	1	24245	24245		5.7319	0	1	145240			32277	1550	18684	18685	39638	39638					0.10690847091291289
PGLPKVQALID	11	Unmodified	_PGLPKVQALID_					0	0	0			REV__ENSG00000204539|ENST00000376288|CDSN	REV__ENSG00000204539|ENST00000376288|CDSN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8438110351562	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.22	1	112.23	111.73	112.73	0.0131								0	0	0	0.37501	1	29212	29212		2.7352	0.67545	1		+		32278	18950	18685	18686	39639	39639					0.10690847091291289
PGLPLLAGL	9	Unmodified	_PGLPLLAGL_					0	0	0		ENSG00000253831|ENST00000454449|ETV3L	ENSG00000253831|ENST00000454449|ETV3L	ENSG00000253831|ENST00000454449|ETV3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2461853027344	2	425.773471	849.53239	-0.15443	-6.5752E-05	0.15713	6.69E-05	0.0026955	1.1477E-06	425.77347054876526	74.108	0.90726	74.16	73.796	74.703	0.052361					45	30	2	0	0	0	0.22431	1	19124	19124		14.582	0	1	557630			32279	8605	18686	18687	39640	39640					0.10160464770854105
PGLTVPPSR	9	Unmodified	_PGLTVPPSR_					0	0	0			REV__ENSG00000185133|ENST00000331075|INPP5J	REV__ENSG00000185133|ENST00000331075|INPP5J	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.93756103515625	2	462.269084	922.523616	0.46772	0.00021621	1.3466	0.00062249	1.8143	0.00083871	462.26949463991537	20.436	0.56035	20.383	20.275	20.835	-0.052912					26	19	2	0	0	0	0.22596	1	2507	2507		15.847	4.2069	1	85543	+		32280	18358	18687	18688	39641	39641					0.05925491134371441
PGLWRYQRYLK	11	Unmodified	_PGLWRYQRYLK_					0	0	0			REV__ENST00000533705.5_1_9:86283447-86283558:-|nuORF	REV__ENST00000533705.5_1_9:86283447-86283558:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7801208496094	3	493.945494	1478.81465	0.50415	0.00024902	-1.9775	-0.0009768	-1.4734	-0.00072778	494.2794954224952	26.628	0.73113	26.606	26.328	27.059	-0.022236					51	25	3	0	0	0	0.33303	1	4393	4393		1.1098	0.096179	1	400010	+		32281	22046	18688	18689	39642	39642					0.09439809779451025
PGPARQWYL	9	Unmodified	_PGPARQWYL_					0	0	0		ENST00000465348.5_1_6:31610527-31611963:-|nuORF	ENST00000465348.5_1_6:31610527-31611963:-|nuORF	ENST00000465348.5_1_6:31610527-31611963:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.332763671875	2	544.287808	1086.56106	0.12599	6.8572E-05	-2.2696	-0.0012353	-2.1436	-0.0011667	544.2863819816456	12.906	0.13734	12.906	12.815	12.952	0					8	4	2	0	0	0	0.26145	1	246	246		2.0598	0.21551	1	22600			32282	10795	18689	18690	39643	39643					0.0212458239998341
PGPARQWYL	9	Unmodified	_PGPARQWYL_					0	0	0		ENST00000465348.5_1_6:31610527-31611963:-|nuORF	ENST00000465348.5_1_6:31610527-31611963:-|nuORF	ENST00000465348.5_1_6:31610527-31611963:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.287808	1086.56106	0.26001	0.00014152	-3.416	-0.0018593	-3.156	-0.0017178	544.2859745135327	12.973	0.13894	12.874	12.785	12.924	-0.099291	-0.0049132	-0.00036737	NaN	2.0598	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32306			32283	10795	18689	18690							0.0212458239998341
PGPEAWLIP	9	Unmodified	_PGPEAWLIP_					0	0	0			REV__ENSG00000239961|ENST00000291759|LILRA4	REV__ENSG00000239961|ENST00000291759|LILRA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.5796203613281	2	490.26601	978.517468	0.0021914	1.0744E-06	-3.6857	-0.001807	-3.6835	-0.0018059	490.26428089923036	13.887	0.2486	13.887	13.714	13.962	0					10	8	2	0	0	0	0.25526	1	521	521		7.9102	0	1	21333	+		32284	19165	18690	18691	39644	39644					0.027349729028628644
PGPGRTYFLF	10	Unmodified	_PGPGRTYFLF_					0	0	0			REV__ENSG00000183208|ENST00000329600|GDPGP1	REV__ENSG00000183208|ENST00000329600|GDPGP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.7901000976562	2	577.803291	1153.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.968	1	67.951	67.451	68.451	-0.016296								0	0	0	0.34994	1	17084	17084		14.838	2.3067	1		+		32285	18246	18691	18692	39645	39645					0.021377357142227993
PGPRAPCRPGP	11	Unmodified	_PGPRAPCRPGP_					0	0	0		ENST00000309383.5_3_19:55795604-55798431:+|nuORF	ENST00000309383.5_3_19:55795604-55798431:+|nuORF	ENST00000309383.5_3_19:55795604-55798431:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7894287109375	2	552.790192	1103.56583	0.037511	2.0736E-05	0.18978	0.00010491	0.22729	0.00012564	552.7907381083318	13.333	0.46276	13.234	12.953	13.416	-0.099291					23	15	2	0	0	0	0.46475	1	403	403		2.7352	0.89096	1	110350			32286	9302	18692	18693	39646	39646					0.018191432711091693
PGPRAPRAPP	10	Unmodified	_PGPRAPRAPP_					0	0	0		ENST00000480399.1_1_1:49225020-49242493:-|nuORF	ENST00000480399.1_1_1:49225020-49242493:-|nuORF	ENST00000480399.1_1_1:49225020-49242493:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.27978515625	2	508.293425	1014.5723	0.015762	8.0117E-06	-2.4684	-0.0012546	-2.4526	-0.0012466	508.2919625448873	14.697	0.36532	14.697	14.423	14.789	0					16	12	2	0	0	0	0.32033	1	729	729		3.5965	0.31518	1	21433			32287	11008	18693	18694	39647	39647					0.06559404494123555
PGPRPLRLRLP	11	Unmodified	_PGPRPLRLRLP_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.26312255859375	3	424.606813	1270.79861	-0.0026941	-1.1439E-06	-0.41578	-0.00017654	-0.41847	-0.00017769	424.6065707973912	38.009	1.1808	38.009	37.56	38.741	0					113	41	4	0	0	0	0.33287	1	8099	8099		1.3296	0	1	1326000	+		32288	17310	18694	18695	39648	39648					0.17404148333207559
PGQGRRRRQR	10	Unmodified	_PGQGRRRRQR_					0	0	0		ENST00000525786.1_1_11:96120692-96123066:-|nuORF;ENST00000524836.1_1_11:96119342-96123066:-|nuORF	ENST00000525786.1_1_11:96120692-96123066:-|nuORF	ENST00000525786.1_1_11:96120692-96123066:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.87109375	2	633.87176	1265.72897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.6	1	115.6	115.1	116.1	0								0	0	0	0.38166	1	29954	29954		1.4819	0	1				32289	11526	18695	18696	39649	39649					0.10673082437165249
PGQKEKKKSRP	11	Unmodified	_PGQKEKKKSRP_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.90185546875	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.69	1	104.69	104.19	105.19	0								0	0	0	0.37609	1	27784	27784		2.4985	0	1		+		32290	20039	18696	18697	39650	39650					0.12211243991396259
PGQKEKKKSRP	11	Unmodified	_PGQKEKKKSRP_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.861083984375	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.76	1	104.76	104.26	105.26	0								0	0	0	0.37609	1	27797	27797		2.4985	0.43874	1		+		32291	20039	18696	18697	39651	39651					0.12211243991396259
PGQKEKKKSRP	11	Unmodified	_PGQKEKKKSRP_					0	0	0			REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8824462890625	2	641.883136	1281.75172	0.25597	0.00016431	-1.417	-0.00090957	-1.1611	-0.00074527	641.8820008893804	112	0.41194	111.98	111.85	112.26	-0.015625					71	49	2	0	0	0	0.47649	1	29190	29190		1.1933	0.66858	1	81161	+		32292	20039	18696	18697	39652	39652					0.12211243991396259
PGRASRFLQSI	11	Unmodified	_PGRASRFLQSI_					0	0	0		ENST00000497878.5_1_19:2988043-2994999:+|nuORF;nc|ENSG00000104953|Q9H808-2|TLE6;ENSG00000104953|ENST00000246112|TLE6	ENST00000497878.5_1_19:2988043-2994999:+|nuORF	ENST00000497878.5_1_19:2988043-2994999:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.22076416015625	3	411.235045	1230.6833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.911	1	40.003	39.503	40.503	0.09267								0	0	0	0.36232	1	8464	8464		5.5233	3.2706	1				32293	1937	18697	18698	39653	39653					0.07718999411576988
PGRGPRHLLPR	11	Unmodified	_PGRGPRHLLPR_					0	0	0			REV__ENST00000496064.5_1_1:2491286-2492222:+|nuORF	REV__ENST00000496064.5_1_1:2491286-2492222:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.57861328125	3	419.254662	1254.74216	-0.26145	-0.00010962	-0.15503	-6.4999E-05	-0.41649	-0.00017461	419.25458385345377	23.14	0.72185	23.14	22.791	23.513	0					41	24	2	0	0	0	0.33326	1	3459	3459		1.4551	0	1	139460	+		32294	21252	18698	18699	39654	39654					0.12497520496549441
PGRKRRRKHRE	11	Unmodified	_PGRKRRRKHRE_					0	0	0		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.6345520019531	3	492.634536	1474.88178	0.24922	0.00012277	-0.11256	-5.5452E-05	0.13666	6.7321E-05	492.6344663430911	93.757	2.7994	93.757	92.584	95.383	0					591	241	4	0	0	0	0.48495	1	25159	25159		0.08335	0.08335	1	1928400			32295	6414	18699	18700	39655	39655					0.1633327783376899
PGRPRGLN	8	Unmodified	_PGRPRGLN_					0	0	0			REV__ENST00000401950.6_1_22:30421796-30421910:+|nuORF	REV__ENST00000401950.6_1_22:30421796-30421910:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.88525390625	2	433.751393	865.488233	-0.43415	-0.00018831	0.1982	8.5971E-05	-0.23595	-0.00010234	433.75137327260745	13.933	0.82087	13.867	13.361	14.181	-0.066067					42	28	2	0	0	0	0.34337	1	664	664		2.3027	0.4585	1	110810	+		32296	20711	18700	18701	39656	39656					0.050108733972251684
PGRQFSWVL	9	Unmodified	_PGRQFSWVL_					0	0	0			REV__ENST00000357984.7_1_17:42264441-42266425:+|nuORF	REV__ENST00000357984.7_1_17:42264441-42266425:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2955322265625	2	545.295633	1088.57671	0.44312	0.00024163	-0.43646	-0.000238	0.0066646	3.6342E-06	545.2953646479452	15.92	0.69111	15.857	15.607	16.298	-0.062533					42	23	2	0	0	0	0.33719	1	1235	1235		3.2813	0.78282	1	109970	+		32297	20224	18701	18702	39657	39657					0.03596868917043139
PGRRADVIL	9	Unmodified	_PGRRADVIL_					0	0	0		ENST00000486040.1_1_7:2274759-2277695:-|nuORF;ENSG00000122687|ENST00000242257|MRM2;ENST00000467199.5_1_7:2274759-2281791:-|nuORF	ENST00000486040.1_1_7:2274759-2277695:-|nuORF	ENST00000486040.1_1_7:2274759-2277695:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.31005859375	2	498.801083	995.587613	0.25777	0.00012858	0.32371	0.00016147	0.58148	0.00029004	498.80131009856643	93.685	0.44502	93.685	93.498	93.943	0					47	36	2	0	0	0	0.25622	1	24924	24924		7.2892	4.4	1	129960			32298	3061	18702	18703	39658	39658					0.08964271291313253
PGRRGEQLHP	10	Unmodified	_PGRRGEQLHP_					0	0	0			REV__ENST00000372870.5_1_9:131122965-131123439:+|nuORF	REV__ENST00000372870.5_1_9:131122965-131123439:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8099975585938	2	573.809971	1145.60539	0.13348	7.6591E-05	-0.17732	-0.00010175	-0.043847	-2.516E-05	573.8098907277573	15.124	0.44104	15.014	14.818	15.259	-0.10982					26	15	2	0	0	0	0.3641	1	954	954		10.074	0.6908	1	94385	+		32299	20424	18703	18704	39659	39659					0.03840986546174463
PGRRQRRRRQR	11	Unmodified	_PGRRQRRRRQR_					0	0	0		ENST00000394967.2_1_2:175202164-175202371:+|nuORF	ENST00000394967.2_1_2:175202164-175202371:+|nuORF	ENST00000394967.2_1_2:175202164-175202371:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.644287109375	3	507.977185	1520.90972	0.22665	0.00011513	1.7693	0.00089875	1.9959	0.0010139	507.9785952485526	93.766	0.45529	93.853	93.672	94.127	0.08667					62	35	2	0	0	0	0.33352	1	24944	24944		0.08335	0.08335	1	303670			32300	10080	18704	18705	39660	39660					0.17010600813841847
PGRRRSSGGH	10	Unmodified	_PGRRRSSGGH_					0	0	0			REV__ENST00000316586.8_1_2:242434575-242434860:-|nuORF	REV__ENST00000316586.8_1_2:242434575-242434860:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.8221435546875	2	533.784287	1065.55402	0.34656	0.00018499	2.8794	0.001537	3.226	0.001722	533.7858591460507	19.619	0.49854	19.619	19.35	19.849	0					22	17	2	0	0	0	0.32132	1	2338	2338		1.4819	0.15237	1	65462	+		32301	19936	18705	18706	39661	39661					0.02386662572143905
PGRSWPQTAQ	10	Unmodified	_PGRSWPQTAQ_					0	0	0			REV__ENST00000171111.9_2_19:10610689-10614227:-|nuORF	REV__ENST00000171111.9_2_19:10610689-10614227:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.2841796875	2	564.283254	1126.55196	0.35078	0.00019794	1.0566	0.00059625	1.4074	0.00079419	564.2839143857393	19.743	0.83514	19.687	19.227	20.062	-0.055691					46	29	2	0	0	0	0.41085	1	2366	2366		1.4819	1.4819	1	52809	+		32302	19386	18706	18707	39662	39662					-0.006258109563532344
PGSKGQPSSV	10	Unmodified	_PGSKGQPSSV_					0	0	0			REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1	REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7539978027344	2	472.245806	942.47706	0.073258	3.4596E-05	0.20545	9.7022E-05	0.27871	0.00013162	472.2457132626598	24.919	0.27486	24.863	24.748	25.023	-0.055929					12	9	2	0	0	0	0.31323	1	3892	3892		15.248	2.206	1	37916	+		32303	14558	18707	18708	39663	39663					0.0035200651242348613
PGSKRRPQTPK	11	Unmodified	_PGSKRRPQTPK_					0	0	0		ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.578369140625	3	417.914194	1250.72075	0.12371	5.1701E-05	0.025768	1.0769E-05	0.14948	6.247E-05	417.9139386564588	23.278	0.63667	23.233	22.977	23.614	-0.044867					41	22	3	0	0	0	0.33189	1	3451	3451		5.8681	2.2755	1	171740			32304	4828	18708	18709	39664	39664					0.10542090677154192
PGSPTLPAK	9	Unmodified	_PGSPTLPAK_					0	0	0		nc|ENSG00000188368|A6NJB7-2|PRR19;ENSG00000188368|ENST00000341747|PRR19	nc|ENSG00000188368|A6NJB7-2|PRR19	nc|ENSG00000188368|A6NJB7-2|PRR19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.2376708984375	2	434.25036	866.486168	-0.06325	-2.7466E-05	-0.65319	-0.00028365	-0.71644	-0.00031112	434.24987706345667	26.789	0.50832	26.768	26.592	27.1	-0.021412					30	17	2	0	0	0	0.28128	1	4528	4528		11.64	0.81637	1	151370			32305	7746	18709	18710	39665	39665					0.04758399868762808
PGSPTLPAK	9	Unmodified	_PGSPTLPAK_					0	0	0		nc|ENSG00000188368|A6NJB7-2|PRR19;ENSG00000188368|ENST00000341747|PRR19	nc|ENSG00000188368|A6NJB7-2|PRR19	nc|ENSG00000188368|A6NJB7-2|PRR19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.23779296875	2	434.25036	866.486168	0.057166	2.4825E-05	-0.88062	-0.00038241	-0.82345	-0.00035758	434.2497910452244	26.811	0.53553	26.8	26.625	27.16	-0.01156					28	18	2	0	0	0	0.28128	1	4537	4537		11.64	0.81637	1	147240			32306	7746	18709	18710	39666	39666					0.04758399868762808
PGTAPFLH	8	Unmodified	_PGTAPFLH_					0	0	0		nc|ENSG00000158555|Q8WTR4-2|GDPD5	nc|ENSG00000158555|Q8WTR4-2|GDPD5	nc|ENSG00000158555|Q8WTR4-2|GDPD5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.2237854003906	2	420.224146	838.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.226	1	58.226	57.726	58.726	0								0	0	0	0.20846	1	14103	14103		42.968	0	1				32307	12783	18710	18711	39667	39667					0.00805861525805085
PGTEATISIR	10	Unmodified	_PGTEATISIR_					0	0	0		nc|ENSG00000162572|P51172-1|SCNN1D;nc|ENSG00000162572|P51172-2|SCNN1D;ENSG00000162572|ENST00000379116|SCNN1D	nc|ENSG00000162572|P51172-1|SCNN1D	nc|ENSG00000162572|P51172-1|SCNN1D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3137817382812	2	522.787838	1043.56112	0.50542	0.00026423	-1.6043	-0.00083871	-1.0989	-0.00057448	522.7871941780909	21.29	0.28321	21.239	21.12	21.403	-0.050791					13	9	2	0	0	0	0.31889	1	2768	2768		6.2058	0	1	30641			32308	5582	18711	18712	39668	39668					0.04108537609317864
PGTLSERQV	9	Unmodified	_PGTLSERQV_					0	0	0			REV__ENSG00000183011|ENST00000575771|NAA38	REV__ENSG00000183011|ENST00000575771|NAA38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.76715087890625	2	493.766906	985.519259	0.018204	8.9883E-06	0.26967	0.00013315	0.28787	0.00014214	493.76703496782784	24.905	0.39064	24.874	24.681	25.072	-0.031408					27	12	3	0	0	0	0.25431	1	3906	3906		9.3831	0.40688	1	155700	+		32309	18231	18712	18713	39669	39669					0.025919819208070294
PGTLSSFRR	9	Unmodified	_PGTLSSFRR_					0	0	0		ENST00000339174.9_2_Y:16636616-16734060:+|nuORF	ENST00000339174.9_2_Y:16636616-16734060:+|nuORF	ENST00000339174.9_2_Y:16636616-16734060:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.226806640625	2	510.78289	1019.55123	0.045813	2.34E-05	-0.017657	-9.0187E-06	0.028156	1.4382E-05	510.7828643919314	18.045	0.48721	17.987	17.768	18.255	-0.058174					30	17	3	0	0	0	0.22596	1	1872	1872		21.747	6.9084	1	59911			32310	9508	18713	18714	39670	39670					0.04223394394614388
PGTWAPHI	8	Unmodified	_PGTWAPHI_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.2087707519531	2	439.729595	877.444637	0.31112	0.00013681	-0.28792	-0.00012661	0.023205	1.0204E-05	439.72940760503803	45.83	0.49929	45.895	45.647	46.146	0.065048					28	17	2	0	0	0	0.30749	1	10241	10241		28.173	0	1	217750			32311	3572	18714	18715	39671	39671					0.0010126390006917063
PGVPDPHY	8	Unmodified	_PGVPDPHY_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2113952636719	2	441.211235	880.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.264	1	91.264	90.764	91.764	0								0	0	0	0.37664	1	24228	24228		2.5775	0	1		+		32312	18137	18715	18716	39672	39672					-0.03707032716476988
PGVQVRLFL	9	Unmodified	_PGVQVRLFL_					0	0	0		ENST00000547437.5_1_19:14721111-14721183:+|nuORF	ENST00000547437.5_1_19:14721111-14721183:+|nuORF	ENST00000547437.5_1_19:14721111-14721183:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.8135375976562	2	514.816202	1027.61785	0.25528	0.00013142	-1.7882	-0.0009206	-1.5329	-0.00078918	514.8148617365016	70.258	1.2962	70.324	69.664	70.961	0.06604					92	46	4	0	0	0	0.20344	1	17815	17815		23.148	1.4018	1	2312300			32313	11768	18716	18717	39673	39673					0.10514629956514909
PGVWLFML	8	Unmodified	_PGVWLFML_					0	0	0		ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000149403|ENST00000527524|GRIK4	ENST00000533291.5_1_11:120531027-120833419:+|nuORF	ENST00000533291.5_1_11:120531027-120833419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7642822265625	2	481.762049	961.509546	-0.14192	-6.8371E-05	-1.6823	-0.00081046	-1.8242	-0.00087884	481.7618950290589	13.005	0.45283	12.937	12.763	13.215	-0.067496					63	15	6	0	0	0	0.45851	1	328	328		2.8892	0.31174	1	380650			32314	4863	18717	18718	39674	39674					0.02725122381730216
PHAGFRIAF	9	Unmodified	_PHAGFRIAF_					0	0	0		ENSG00000155970|ENST00000318063|MICU3;ENST00000517447.1_1_8:16935303-16948108:+|nuORF	ENSG00000155970|ENST00000318063|MICU3	ENSG00000155970|ENST00000318063|MICU3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2772521972656	2	508.277244	1014.53993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.664	1	90.755	90.255	91.255	0.090668								0	0	0	0.23091	1	24031	24031		12.532	3.1841	1				32315	5210	18718	18719	39675	39675					0.03324617091129767
PHCCPDCGQAF	11	Unmodified	_PHCCPDCGQAF_					0	0	0		ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3223266601562	2	589.214811	1176.41507	0.34163	0.00020129	-1.5404	-0.00090765	-1.1988	-0.00070636	589.2140229815619	59.154	0.50007	59.154	58.767	59.267	0					21	17	2	0	0	0	0.33219	1	14420	14420		1.4819	0.8804	1	125460			32316	8308	18719	18720	39676	39676					-0.16608127494214386
PHCCPDCGQAF	11	Unmodified	_PHCCPDCGQAF_					0	0	0		ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	589.214811	1176.41507	0.45581	0.00026857	-0.75325	-0.00044382	-0.29743	-0.00017525	589.2142549000043	59.031	0.56332	59.016	58.746	59.309	-0.014267	-0.069062	0.00053686	NaN	1.4819	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191660			32317	8308	18719	18720							-0.16608127494214386
PHCKKVIPH	9	Unmodified	_PHCKKVIPH_					0	0	0		ENSG00000065485|ENST00000316218|PDIA5;ENST00000467157.1_1_3:122864388-122880365:+|nuORF	ENSG00000065485|ENST00000316218|PDIA5	ENSG00000065485|ENST00000316218|PDIA5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.8374633789062	2	529.800029	1057.5855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.053	1	11.956	11.456	12.456	-0.096607								0	0	0	0.26704	1	14	14		0.6015	0.6015	1				32318	815	18720	18721	39677	39677					0.05901519281860601
PHCRFAKK	8	Unmodified	_PHCRFAKK_					0	0	0			REV__ENSG00000223547|ENST00000439326|ZNF844	REV__ENSG00000223547|ENST00000439326|ZNF844	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7802734375	2	493.771271	985.52799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.669	1	26.631	26.131	27.131	-0.038671								0	0	0	0.35251	1	4426	4426		13.508	0	1		+		32319	19105	18721	18722	39678	39678					0.0346467707629472
PHEAFHRHAW	10	Unmodified	_PHEAFHRHAW_					0	0	0		nc|ENSG00000111452|Q6QNK2-2|ADGRD1;ENSG00000111452|ENST00000261654|ADGRD1;nc|ENSG00000111452|Q6QNK2-4|ADGRD1	nc|ENSG00000111452|Q6QNK2-2|ADGRD1	nc|ENSG00000111452|Q6QNK2-2|ADGRD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.3109741210938	2	644.310138	1286.60572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.488	1	18.488	17.988	18.988	0								0	0	0	0.38126	1	1947	1947		1.6526	0.58116	1				32320	2365	18722	18723	39679	39679					-0.02611593733945483
PHFRGQAQFF	10	Unmodified	_PHFRGQAQFF_					0	0	0			REV__ENST00000573802.1_1_16:2793706-2802586:-|nuORF	REV__ENST00000573802.1_1_16:2793706-2802586:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.82977294921875	3	412.208718	1233.60433	0.18403	7.5858E-05	4.113	0.0016954	4.297	0.0017713	412.2106243661788	43.865	0.13416	43.942	43.865	43.999	0.077518					6	4	2	0	0	0	0.32009	1	9658	9658		1.9064	0	1	191920	+		32321	22427	18723	18724	39680	39680					-0.003132278227212737
PHFRHLDVS	9	Unmodified	_PHFRHLDVS_					0	0	0			REV__ENSG00000198561|ENST00000399050|CTNND1	REV__ENSG00000198561|ENST00000399050|CTNND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.7337646484375	2	554.28834	1106.56213	-0.11888	-6.5896E-05	-0.68691	-0.00038075	-0.80579	-0.00044664	554.2877747343988	13.258	0.17371	13.191	13.102	13.275	-0.067496					7	5	2	0	0	0	0.26145	1	364	364		2.0598	0	1	12005	+		32322	18833	18724	18725	39681	39681					0.013107967688711142
PHFVVPFMA	9	Unmodified	_PHFVVPFMA_					0	0	0			REV__nc|ENSG00000129003|Q709C8-4|VPS13C	REV__nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7701416015625	2	522.770406	1043.52626	0.31885	0.00016669	-0.95882	-0.00050124	-0.63997	-0.00033456	522.7699725542914	16.182	0.42423	16.182	15.981	16.405	0					32	14	3	0	0	0	0.32415	1	1251	1251		5.2307	0	1	56126	+		32323	15396	18725	18726	39682	39682					0.006236232676883446
PHGKTNPG	8	Unmodified	_PHGKTNPG_					0	0	0			REV__nc|ENSG00000099377|Q9H2F3-2|HSD3B7	REV__nc|ENSG00000099377|Q9H2F3-2|HSD3B7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.22174072265625	2	404.209027	806.403501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.12	1	20.004	19.504	20.504	-0.11592								0	0	0	0.37664	1	2442	2442		2.5775	0.27475	1		+		32324	14133	18726	18727	39683	39683					-0.007444971393738342
PHGVRLAAVT	10	Unmodified	_PHGVRLAAVT_					0	0	0			REV__ENST00000530405.5_3_11:47204576-47204690:-|nuORF	REV__ENST00000530405.5_3_11:47204576-47204690:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2928161621094	2	510.801083	1019.58761	0.29615	0.00015128	-0.14989	-7.6564E-05	0.14626	7.4712E-05	510.8007144687484	38.402	0.71759	38.499	38.176	38.893	0.097527					59	25	3	0	0	0	0.3258	1	8090	8090		17.113	3.2068	1	812670	+		32325	21952	18727	18728	39684	39684					0.07860271291337995
PHHHTRLSL	9	Unmodified	_PHHHTRLSL_					0	0	0		ENST00000488149.5_1_3:183027559-183118319:-|nuORF	ENST00000488149.5_1_3:183027559-183118319:-|nuORF	ENST00000488149.5_1_3:183027559-183118319:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.316650390625	2	549.301781	1096.58901	-0.42937	-0.00023585	-0.099979	-5.4918E-05	-0.52935	-0.00029077	549.301550341142	34.514	0.70346	34.514	34.164	34.868	0					62	24	3	0	0	0	0.14786	2	6834	6834;6884		31.268	11.829	1	807680			32326	11131	18728	18729	39685;39686	39685					0.04457905380081684
PHHHTRLSL	9	Unmodified	_PHHHTRLSL_					0	0	0		ENST00000488149.5_1_3:183027559-183118319:-|nuORF	ENST00000488149.5_1_3:183027559-183118319:-|nuORF	ENST00000488149.5_1_3:183027559-183118319:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3165283203125	2	549.301781	1096.58901	-0.42613	-0.00023407	-0.22886	-0.00012571	-0.65498	-0.00035978	549.3014739447898	34.443	0.74553	34.518	34.129	34.874	0.075306					64	26	3	0	0	0	0.14786	2	6793	6793;6841		31.268	7.6309	1	883920			32327	11131	18728	18729	39687;39688	39687					0.04457905380081684
PHHHTRLSL	9	Unmodified	_PHHHTRLSL_					0	0	0		ENST00000488149.5_1_3:183027559-183118319:-|nuORF	ENST00000488149.5_1_3:183027559-183118319:-|nuORF	ENST00000488149.5_1_3:183027559-183118319:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3165893554688	2	549.301781	1096.58901	0.052973	2.9098E-05	-0.70563	-0.00038761	-0.65266	-0.00035851	549.3012204123329	34.372	0.69905	34.445	34.134	34.833	0.073601					60	24	3	0	0	0	0.21447	1	6781	6781		21.537	4.4241	1	809930			32328	11131	18728	18729	39689	39689					0.04457905380081684
PHHLKRTV	8	Unmodified	_PHHLKRTV_					0	0	0			REV__ENSG00000179097|ENST00000319595|HTR1F	REV__ENSG00000179097|ENST00000319595|HTR1F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.8031921386719	2	494.295968	986.577383	0.32197	0.00015915	-1.4198	-0.00070182	-1.0979	-0.00054267	494.2951239369164	27.078	0.25895	27.078	27.007	27.266	0					11	8	2	0	0	0	0.34319	1	4569	4569		5.7604	1.0044	1	41751	+		32329	18062	18729	18730	39690	39690					0.08355708356737068
PHHLRHFR	8	Unmodified	_PHHLRHFR_					0	0	0			REV__ENSG00000143067|ENST00000421812|ZNF697	REV__ENSG00000143067|ENST00000421812|ZNF697	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3054809570312	2	550.304659	1098.59476	0.20672	0.00011376	3.077	0.0016933	3.2837	0.001807	550.3057111503766	19.402	0.59256	19.402	19.034	19.627	0					45	20	3	0	0	0	0.45942	1	2217	2217		2.5775	0.27475	1	146270	+		32330	16146	18730	18731	39691	39691					0.049410486823944666
PHHLWPLL	8	Unmodified	_PHHLWPLL_					0	0	0		ENST00000332438.4_1_17:40831559-40832345:-|nuORF	ENST00000332438.4_1_17:40831559-40832345:-|nuORF	ENST00000332438.4_1_17:40831559-40832345:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.8166809082031	2	506.789987	1011.56542	0.022868	1.1589E-05	0.6682	0.00033864	0.69107	0.00035023	507.2915452735091	12.153	0.072367	12.056	12	12.072	-0.096607					5	3	2	0	0	0	0.34434	1	43	43		0.79363	0	1	9409.9			32331	9450	18731	18732	39692	39692					0.06010091613552504
PHHRVIEV	8	Unmodified	_PHHRVIEV_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000572932.1_1_16:16374097-16382502:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7801513671875	2	493.780151	985.545748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.502	1	26.502	26.002	27.002	0								0	0	0	0.04596	1	4372	4372		71.922	26.223	1				32332	1820	18732	18733	39693	39693					0.05239715602795059
PHIMLKML	8	Unmodified	_PHIMLKML_					0	0	0			REV__ENSG00000144357|ENST00000272793|UBR3	REV__ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.78277587890625	2	491.782459	981.550365	0.24813	0.00012203	0.60185	0.00029598	0.84998	0.00041801	491.78270600126285	26.51	0.68358	26.51	26.242	26.925	0					54	23	3	0	0	0	0.31375	1	4365	4365		26.341	26.341	1	376740	+		32333	16229	18733	18734	39694	39694					0.05885140429711555
PHIMLKML	8	Unmodified	_PHIMLKML_					0	0	0			REV__ENSG00000144357|ENST00000272793|UBR3	REV__ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7829284667969	2	491.782459	981.550365	0.27134	0.00013344	0.49154	0.00024173	0.76288	0.00037517	491.7826703113564	26.553	0.90579	26.515	26.235	27.141	-0.038671					53	31	2	0	0	0	0.27422	1	4383	4383		40.449	6.0469	1	420420	+		32334	16229	18733	18734	39695	39695					0.05885140429711555
PHIMLKML	8	Unmodified	_PHIMLKML_					0	0	0			REV__ENSG00000144357|ENST00000272793|UBR3	REV__ENSG00000144357|ENST00000272793|UBR3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.782459	981.550365	0.48695	0.00023947	0.38748	0.00019056	0.87443	0.00043003	491.78256083093765	26.563	0.70526	26.541	26.298	27.003	-0.022238	0.019287	-0.00011735	NaN	40.449	55	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	445700	+		32335	16229	18733	18734							0.05885140429711555
PHIPLFPW	8	Unmodified	_PHIPLFPW_					0	0	0		nc|ENSG00000075426|P15408-2|FOSL2	nc|ENSG00000075426|P15408-2|FOSL2	nc|ENSG00000075426|P15408-2|FOSL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.7784423828125	2	503.779088	1005.54362	0.2182	0.00010993	-3.0096	-0.0015162	-2.7914	-0.0014062	503.7783145364042	23.024	0.72382	22.979	22.501	23.225	-0.044867					73	25	4	0	0	0	0.45851	1	3257	3257		2.8892	0.31174	1	112660			32336	12588	18734	18735	39696	39696					0.041072868649848715
PHITATPTSF	10	Unmodified	_PHITATPTSF_					0	0	0		ENSG00000233802|ENST00000623787|TRIM49D2;ENSG00000223417|ENST00000420869|TRIM49D1	ENSG00000233802|ENST00000623787|TRIM49D2	ENSG00000233802|ENST00000623787|TRIM49D2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2799682617188	2	536.277106	1070.53966	0.31076	0.00016665	1.722	0.0009235	2.0328	0.0010901	536.278611376595	75.718	1.6753	75.771	74.612	76.288	0.052361					193	60	5	0	0	0	0.10934	1	19569	19569		46.021	3.9264	1	42413000			32337	8433	18735	18736	39697	39697					0.007211525806042118
PHKAESKSYFP	11	Unmodified	_PHKAESKSYFP_					0	0	0		CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8882751464844	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.228	1	34.228	33.728	34.728	0								0	0	0	0.33831	1	6726	6726		5.8681	0	1				32338	241	18736	18737	39698	39698					0.0072018456346540916
PHKQRLRQ	8	Unmodified	_PHKQRLRQ_					0	0	0			REV__ENST00000508784.5_1_4:146824055-146859708:-|nuORF	REV__ENST00000508784.5_1_4:146824055-146859708:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.817138671875	2	531.817599	1061.62064	0.52389	0.00027862	-1.0088	-0.00053647	-0.48486	-0.00025786	531.8165383956051	90.744	0.70078	90.744	90.355	91.056	0					127	53	3	0	0	0	0.45942	1	24138	24138		2.5775	0	1	680540	+		32339	21777	18737	18738	39699	39699					0.09229898134026371
PHKQRLRQ	8	Unmodified	_PHKQRLRQ_					0	0	0			REV__ENST00000508784.5_1_4:146824055-146859708:-|nuORF	REV__ENST00000508784.5_1_4:146824055-146859708:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8167114257812	2	531.817599	1061.62064	0.52389	0.00027862	-1.0088	-0.00053647	-0.48486	-0.00025786	531.8165383956051	90.744	0.70078	90.744	90.355	91.056	0					127	53	3	0	0	0	0.34218	1	24048	24048		5.2307	0.47466	1	680540	+		32340	21777	18737	18738	39700	39700					0.09229898134026371
PHKQRLRQ	8	Unmodified	_PHKQRLRQ_					0	0	0			REV__ENST00000508784.5_1_4:146824055-146859708:-|nuORF	REV__ENST00000508784.5_1_4:146824055-146859708:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	531.817599	1061.62064	0.61254	0.00032576	-1.055	-0.00056107	-0.44246	-0.00023531	531.8165213448367	90.711	0.99025	90.711	89.994	90.984	0.0003891	-0.02088	-6.2089E-05	NaN	5.2307	155	75	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573310	+		32341	21777	18737	18738							0.09229898134026371
PHKRRVGFLR	10	Unmodified	_PHKRRVGFLR_					0	0	0			REV__ENST00000377069.8_1_12:121958836-121958902:-|nuORF	REV__ENST00000377069.8_1_12:121958836-121958902:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.594482421875	3	422.594907	1264.76289	-0.45021	-0.00019026	-0.030267	-1.279E-05	-0.48048	-0.00020305	422.59473391182246	104.61	0.72551	104.61	104.3	105.02	0					231	101	3	0	0	0	0.41085	2	27730	27730;27763		0.62683	0.62683	1	408270	+		32342	20498	18738	18739	39701;39702	39701					0.14110110876208637
PHKRRVGFLR	10	Unmodified	_PHKRRVGFLR_					0	0	0			REV__ENST00000377069.8_1_12:121958836-121958902:-|nuORF	REV__ENST00000377069.8_1_12:121958836-121958902:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.59466552734375	3	422.594907	1264.76289	-0.24754	-0.00010461	-0.21167	-8.9452E-05	-0.45921	-0.00019406	422.59462564303385	104.42	0.6579	104.42	104.2	104.86	0.0018463					186	94	3	0	0	0	0.41085	1	27737	27737		0.62683	0.21856	1	516570	+		32343	20498	18738	18739	39703	39703					0.14110110876208637
PHLGRAPGL	9	Unmodified	_PHLGRAPGL_					0	0	0			REV__ENST00000263801.7_1_15:43802577-43802799:-|nuORF	REV__ENST00000263801.7_1_15:43802577-43802799:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2698669433594	2	459.269419	916.524284	0.38919	0.00017874	0.19569	8.9876E-05	0.58489	0.00026862	459.26927601595406	20.765	0.65628	20.655	20.407	21.063	-0.11003					54	22	4	0	0	0	0.24581	1	2620	2620		16.942	0	1	162460	+		32344	19624	18739	18740	39704	39704					0.06268330574084757
PHLGWGQL	8	Unmodified	_PHLGWGQL_					0	0	0			REV__ENST00000464987.5_1_11:850289-864703:+|nuORF	REV__ENST00000464987.5_1_11:850289-864703:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2835693359375	2	454.24287	906.471186	0.22845	0.00010377	1.4993	0.00068105	1.7278	0.00078482	454.24375432899564	90.151	0.21917	90.241	90.069	90.288	0.090675					23	16	2	0	0	0	0.34319	1	23869	23869		2.5775	0.27475	1	51317	+		32345	21269	18740	18741	39705	39705					0.014209527914317732
PHLKAYKARK	10	Unmodified	_PHLKAYKARK_					0	0	0			REV__UBTF|p.D239Tfs*5|1|0.25|ENSG00000108312|chr17:44212400-44212400|C/-|frameshift_variant	REV__UBTF|p.D239Tfs*5|1|0.25|ENSG00000108312|chr17:44212400-44212400|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3709106445312	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.57	1	111.59	111.09	112.09	0.01152								0	0	0	0.38201	1	29048	29048		0.45834	0	1		+		32346	14586	18741	18742	39706	39706					0.132924840334681
PHLKHGTK	8	Unmodified	_PHLKHGTK_					0	0	0			REV__nc|ENSG00000198945|Q96JM7-2|L3MBTL3	REV__nc|ENSG00000198945|Q96JM7-2|L3MBTL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.26995849609375	2	459.269419	916.524284	0.43159	0.00019822	0.39179	0.00017994	0.82338	0.00037815	459.2694375416037	20.625	0.6499	20.572	20.327	20.977	-0.052912					50	22	4	0	0	0	0.41758	1	2573	2573		16.942	0	1	174810	+		32347	18898	18742	18743	39707	39707					0.06268330574096126
PHLLKVKMRIR	11	Unmodified	_PHLLKVKMRIR_					0	0	0			REV__ENST00000559596.5_1_15:41634623-41643204:+|nuORF	REV__ENST00000559596.5_1_15:41634623-41643204:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.29937744140625	3	464.299103	1389.87548	0.21407	9.9391E-05	1.0751	0.00049919	1.2892	0.00059858	464.29978367851857	39.956	1.2668	40.048	39.662	40.929	0.09267					124	45	4	0	0	0	0.48212	1	8534	8534		0.45452	0	1	681910	+		32348	22290	18743	18744	39708	39708					0.19613623558029758
PHLLSHPS	8	Unmodified	_PHLLSHPS_					0	0	0		nc|ENSG00000204577|O75022|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3	nc|ENSG00000204577|O75022|LILRB3	nc|ENSG00000204577|O75022|LILRB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.7644958496094	2	444.240327	886.466101	0.34446	0.00015302	-1.7885	-0.00079453	-1.444	-0.0006415	444.239413720341	68.665	0.68616	68.665	68.381	69.067	0					29	24	2	0	0	0	0.34218	1	17349	17349		5.2307	0.90143	1	149000			32349	12910	18744	18745	39709	39709					0.018326489288028824
PHLLSHPS	8	Unmodified	_PHLLSHPS_					0	0	0		nc|ENSG00000204577|O75022|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3	nc|ENSG00000204577|O75022|LILRB3	nc|ENSG00000204577|O75022|LILRB3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	444.240327	886.466101	0.34302	0.00015239	-1.5442	-0.00068599	-1.2012	-0.00053361	444.2395232953917	68.639	0.43721	68.62	68.484	68.921	-0.01915	-0.022789	0.00013438	NaN	5.2307	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205050			32350	12910	18744	18745							0.018326489288028824
PHLPATAF	8	Unmodified	_PHLPATAF_					0	0	0		nc|ENSG00000185513|Q9Y468|L3MBTL1;ENSG00000185513|ENST00000418998|L3MBTL1	nc|ENSG00000185513|Q9Y468|L3MBTL1	nc|ENSG00000185513|Q9Y468|L3MBTL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.7525329589844	2	427.231971	852.449388	-0.094457	-4.0355E-05	-1.9741	-0.0008434	-2.0686	-0.00088376	427.23249726128125	59.123	0.33059	59.123	58.832	59.162	0					12	11	2	0	0	0	0.34046	1	14300	14300		14.582	3.4672	1	68450			32351	7538	18745	18746	39710	39710					0.017261480428373943
PHLPGDVLH	9	Unmodified	_PHLPGDVLH_					0	0	0		nc|ENSG00000170085|Q8NDZ2|SIMC1;ENSG00000170085|ENST00000429602|SIMC1;nc|ENSG00000170085|Q8NDZ2-2|SIMC1	nc|ENSG00000170085|Q8NDZ2|SIMC1	nc|ENSG00000170085|Q8NDZ2|SIMC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2638854980469	2	492.766709	983.518865	0.018272	9.0039E-06	-1.4288	-0.00070408	-1.4106	-0.00069508	492.76531636478666	59.736	0.32978	59.831	59.631	59.961	0.095093					17	11	2	0	0	0	0.21137	1	14509	14509		18.135	3.5533	1	201360			32352	6421	18746	18747	39711	39711					0.026446069916119086
PHLRAYRA	8	Unmodified	_PHLRAYRA_					0	0	0		ENST00000263563.6_1_10:72238698-72285885:+|nuORF	ENST00000263563.6_1_10:72238698-72285885:+|nuORF	ENST00000263563.6_1_10:72238698-72285885:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.26470947265625	2	492.280318	982.546083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.395	1	59.486	58.986	59.986	0.091301								0	0	0	0.33625	1	14454	14454		20.871	5.103	1				32353	9010	18747	18748	39712	39712					0.05411135322651717
PHLSLFIPR	9	Unmodified	_PHLSLFIPR_					0	0	0		nc|ENSG00000141219|Q9BSJ5-2|MTNAP1;nc|ENSG00000141219|Q9BSJ5-3|MTNAP1;ENSG00000141219|ENST00000535032|C17orf80	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.261474609375	2	540.321651	1078.62875	0.73891	0.00039925	3.0468	0.0016463	3.7857	0.0020455	540.3231780111685	21.116	0.36754	21.005	20.753	21.121	-0.11003					21	12	2	0	0	0	0.24311	1	2699	2699		11.64	0	1	66848			32354	4359	18748	18749	39713	39713					0.09258032330785682
PHLSRRRRNKR	11	Unmodified	_PHLSRRRRNKR_					0	0	0		ENSG00000125966|ENST00000246186|MMP24	ENSG00000125966|ENST00000246186|MMP24	ENSG00000125966|ENST00000246186|MMP24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.3081359863281	3	492.634536	1474.88178	0.25061	0.00012346	0.065629	3.2331E-05	0.31624	0.00015579	492.6344335793473	95.881	0.18573	95.958	95.801	95.987	0.077408					23	14	2	0	0	0	0.33351	1	25623	25623		0.094841	0	1	163350			32355	3248	18749	18750	39714	39714					0.1633327783376899
PHNLSHTVVY	10	Unmodified	_PHNLSHTVVY_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.2863159179688	2	583.80128	1165.58801	0.43165	0.000252	2.3807	0.0013899	2.8124	0.0016419	583.8032951070986	26.446	2.0306	26.424	26.105	28.135	-0.022236					215	71	6	0	0	0	0.38233	1	4370	4370		6.7232	0	1	17472000			32356	11999	18750	18751	39715	39715					0.011836462205337739
PHNYAIQKF	9	Unmodified	_PHNYAIQKF_					0	0	0			REV__ENSG00000074771|ENST00000159060|NOX3	REV__ENSG00000074771|ENST00000159060|NOX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.7542114257812	2	559.293091	1116.57163	0.49088	0.00027455	-3.5622	-0.0019923	-3.0713	-0.0017178	559.2915721302429	67.684	0.35023	67.762	67.546	67.897	0.078041					18	11	2	0	0	0	0.20651	1	16960	16960		26.884	8.7487	1	101950	+		32357	13794	18751	18752	39716	39716					0.018005650544182572
PHNYAIQKF	9	Unmodified	_PHNYAIQKF_					0	0	0			REV__ENSG00000074771|ENST00000159060|NOX3	REV__ENSG00000074771|ENST00000159060|NOX3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	559.293091	1116.57163	0.30197	0.00016889	-4.5613	-0.0025511	-4.2593	-0.0023822	559.2912337514549	67.824	0.59459	67.824	67.479	68.074	0	0.03093	-0.00040079	NaN	26.884	32	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90906	+		32358	13794	18751	18752							0.018005650544182572
PHPHHLGEQ	9	Unmodified	_PHPHHLGEQ_					0	0	0			REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8302612304688	2	526.25704	1050.49953	0.26166	0.0001377	1.5147	0.00079714	1.7764	0.00093484	526.257823786722	17.33	0.58022	17.213	16.965	17.545	-0.11739					32	20	2	0	0	0	0.25811	1	1561	1561		5.2307	0	1	61816	+		32359	22898	18752	18753	39717	39717					-0.02370349299303598
PHPPLGAVSP	10	Unmodified	_PHPPLGAVSP_					0	0	0			REV__ENST00000289921.7_1_8:21961277-21961604:+|nuORF	REV__ENST00000289921.7_1_8:21961277-21961604:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2677917480469	2	486.269084	970.523616	0.38857	0.00018895	-1.1318	-0.00055034	-0.7432	-0.00036139	486.26840535239904	88.735	0.78453	88.735	88.288	89.072	0					94	38	3	0	0	0	0.36002	1	23396	23396		10.824	0	1	219760	+		32360	19748	18753	18754	39718	39718					0.037174911343640815
PHRDFYNI	8	Unmodified	_PHRDFYNI_					0	0	0		ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2;ENSG00000116337|ENST00000528667|AMPD2;ENST00000529299.2_1_1:110170417-110171118:+|nuORF	ENST00000526301.5_1_1:110162158-110172443:+|nuORF	ENST00000526301.5_1_1:110162158-110172443:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.26171875	2	531.261791	1060.50903	0.26517	0.00014087	-0.47867	-0.0002543	-0.21351	-0.00011343	531.2616055386616	59.682	0.4183	59.682	59.479	59.897	0					23	14	2	0	0	0	0.28696	1	14571	14571		32.305	0	1	257890			32361	2722	18754	18755	39719	39719					-0.018805810137791923
PHRKIQRYF	9	Unmodified	_PHRKIQRYF_					0	0	0			REV__chr12:57236910-57237029|481|71.89|0.65|6.78|-|0|None,NDUFA4L2|1	REV__chr12:57236910-57237029|481|71.89|0.65|6.78|-|0|None,NDUFA4L2|1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.853515625	2	622.854181	1243.69381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.999	1	38.999	38.499	39.499	0								0	0	0	0.26334	1	8185	8185		2.0598	0.40713	1		+		32362	13178	18755	18756	39720	39720					0.08171026856643948
PHRLQQRK	8	Unmodified	_PHRLQQRK_					0	0	0			REV__ENST00000446758.5_1_2:179974628-179981501:-|nuORF	REV__ENST00000446758.5_1_2:179974628-179981501:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8170776367188	2	531.817599	1061.62064	0.40649	0.00021618	-0.94162	-0.00050077	-0.53513	-0.00028459	531.8166323495797	90.65	1.1249	90.74	89.872	90.997	0.090668					138	87	3	0	0	0	0.45169	1	24103	24103		5.2307	0.47466	1	683080	+		32363	18496	18756	18757	39721	39721					0.09229898134049108
PHRPRIHKH	9	Unmodified	_PHRPRIHKH_					0	0	0		ENST00000543741.6_1_14:24436525-24436753:+|nuORF	ENST00000543741.6_1_14:24436525-24436753:+|nuORF	ENST00000543741.6_1_14:24436525-24436753:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3430786132812	2	589.344315	1176.67408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.53	1	119.51	119.01	120.01	-0.024361								0	0	0	0.2672	1	30856	30856		0.52476	0.12405	1				32364	11746	18757	18758	39722	39722					0.09280695636539349
PHRRIDIR	8	Unmodified	_PHRRIDIR_					0	0	0		ENSG00000070501|ENST00000265421|POLB	ENSG00000070501|ENST00000265421|POLB	ENSG00000070501|ENST00000265421|POLB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8170776367188	2	531.817599	1061.62064	0.61254	0.00032576	-1.055	-0.00056107	-0.44246	-0.00023531	531.8165213448367	90.711	0.99025	90.711	89.994	90.984	0.0003891					155	75	3	0	0	0	0.4419	1	24074	24074		8.5933	0	1	573310			32365	930	18758	18759	39723	39723					0.09229898134026371
PHRRVGPR	8	Unmodified	_PHRRVGPR_					0	0	0			REV__ENST00000567828.1_1_16:30087621-30093836:+|nuORF	REV__ENST00000567828.1_1_16:30087621-30093836:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7908020019531	2	487.791384	973.568215	0.34405	0.00016783	-0.96241	-0.00046946	-0.61836	-0.00030163	487.790622477175	86.644	1.4996	86.73	86.371	87.871	0.086075					98	68	3	0	0	0	0.42758	1	22782	22782		13.508	13.508	1	628230	+		32366	22384	18759	18760	39724	39724					0.0803735979108069
PHRVRGPR	8	Unmodified	_PHRVRGPR_					0	0	0		nc|ENSG00000005436|P16383-2|GCFC2;ENSG00000005436|ENST00000321027|GCFC2;nc|ENSG00000005436|P16383-3|GCFC2;nc|ENSG00000005436|P16383-4|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.79071044921875	2	487.791384	973.568215	0.44936	0.00021919	-1.1426	-0.00055734	-0.69322	-0.00033815	487.79050908272717	86.74	1.5073	86.735	86.286	87.793	-0.0056229					84	66	2	0	0	0	0.42446	1	22807	22807		14.582	0	1	740080			32367	334	18760	18761	39725	39725					0.0803735979108069
PHSDPYWAI	9	Unmodified	_PHSDPYWAI_					0	0	0		ENSG00000139160|ENST00000357721|ETFBKMT	ENSG00000139160|ENST00000357721|ETFBKMT	ENSG00000139160|ENST00000357721|ETFBKMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.25634765625	2	543.256174	1084.49779	0.16114	8.7543E-05	-0.40727	-0.00022125	-0.24612	-0.00013371	543.2558385490102	14.289	0.53771	14.289	14.138	14.676	0					26	18	2	0	0	0	0.34536	1	704	704		2.0598	0.21551	1	48710			32368	4210	18761	18762	39726	39726					-0.041074031079233464
PHSKAFIVAM	10	Unmodified	_PHSKAFIVAM_					0	0	0		ENSG00000164694|ENST00000297267|FNDC1	ENSG00000164694|ENST00000297267|FNDC1	ENSG00000164694|ENST00000297267|FNDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2725830078125	2	550.799694	1099.58484	0.46362	0.00025536	2.8126	0.0015492	3.2763	0.0018046	550.8014576942896	21.39	0.37041	21.341	21.122	21.492	-0.049377					21	12	2	0	0	0	0.32072	1	2820	2820		2.9952	1.151	1	40570			32369	5868	18762	18763	39727	39727					0.039026798421446074
PHSKEDLKL	9	Unmodified	_PHSKEDLKL_					0	0	0		ENST00000564961.1_1_16:27214833-27222512:+|nuORF;nc|ENSG00000155666|Q8N371-2|KDM8;ENST00000562269.1_1_16:27214862-27222526:+|nuORF;ENSG00000155666|ENST00000286096|KDM8;nc|ENSG00000155666|Q8N371-3|KDM8	ENST00000564961.1_1_16:27214833-27222512:+|nuORF	ENST00000564961.1_1_16:27214833-27222512:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7857055664062	2	533.798206	1065.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.28	1	48.323	47.823	48.823	0.04332								0	0	0	0.21726	1	11026	11026		16.942	2.104	1				32370	5189	18763	18764	39728	39728					0.05169127988983746
PHSLASFPR	9	Unmodified	_PHSLASFPR_					0	0	0		ENST00000347839.10_1_14:104159976-104160069:+|nuORF	ENST00000347839.10_1_14:104159976-104160069:+|nuORF	ENST00000347839.10_1_14:104159976-104160069:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.3316345214844	2	506.272158	1010.52976	0.0051322	2.5983E-06	2.7632	0.0013989	2.7683	0.0014015	506.27303351314737	27.609	0.12157	27.587	27.493	27.615	-0.02141					5	3	2	0	0	0	0.24848	1	4692	4692		13.906	1.3745	1	20019			32371	9567	18764	18765	39729	39729					0.024920093659034137
PHSLPFRLRLR	11	Unmodified	_PHSLPFRLRLR_					0	0	0		ENST00000317173.8_1_8:9911825-9911984:+|nuORF	ENST00000317173.8_1_8:9911825-9911984:+|nuORF	ENST00000317173.8_1_8:9911825-9911984:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.263916015625	3	464.6176	1390.83097	-0.20896	-9.7085E-05	-0.1566	-7.2759E-05	-0.36556	-0.00016984	464.95185823744316	19.397	0.28144	19.397	19.211	19.493	0					13	9	2	0	0	0	0.33347	1	2241	2241		0.45452	0	1	17932			32372	9362	18765	18766	39730	39730					0.151189357362
PHSSLPLT	8	Unmodified	_PHSSLPLT_					0	0	0			REV__ARHGEF15|p.P207Lfs*129|1|0.31|ENSG00000198844|chr17:8312938-8312938|C/-|frameshift_variant	REV__ARHGEF15|p.P207Lfs*129|1|0.31|ENSG00000198844|chr17:8312938-8312938|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2458190917969	2	426.23471	850.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.851	1	79.851	79.351	80.351	0								0	0	0	0.36961	1	20726	20726		5.7604	0	1		+		32373	13112	18766	18767	39731	39731					0.023658268346594014
PHSSLPLT	8	Unmodified	_PHSSLPLT_					0	0	0			REV__ARHGEF15|p.P207Lfs*129|1|0.31|ENSG00000198844|chr17:8312938-8312938|C/-|frameshift_variant	REV__ARHGEF15|p.P207Lfs*129|1|0.31|ENSG00000198844|chr17:8312938-8312938|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2459411621094	2	426.23471	850.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.86	1	79.921	79.421	80.421	0.061417								0	0	0	0.36961	1	20716	20716		5.7604	0	1		+		32374	13112	18766	18767	39732	39732					0.023658268346594014
PHTDSESSDSF	11	Unmodified	_PHTDSESSDSF_					0	0	0			REV__nc|ENSG00000038427|P13611-5|VCAN	REV__nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.36669921875	2	604.738739	1207.46293	0.68217	0.00041253	0.021844	1.321E-05	0.70401	0.00042574	604.7390245925637	33.385	0.33027	33.451	33.266	33.596	0.06636					16	11	2	0	0	0	0.33255	1	6442	6442		2.9952	0.93549	1	108800	+		32375	13517	18767	18768	39733	39733					-0.1325073549719491
PHTIVLVMRF	10	Unmodified	_PHTIVLVMRF_					0	0	0			REV__ENST00000535398.5_1_13:111298395-111353838:-|nuORF	REV__ENST00000535398.5_1_13:111298395-111353838:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5835266113281	3	404.902238	1211.68488	-0.051122	-2.07E-05	1.6665	0.00067476	1.6154	0.00065406	405.23702765820525	19.989	0.19478	19.873	19.786	19.981	-0.11592					9	6	2	0	0	0	0.32051	1	2392	2392		3.8763	2.683	1	11763	+		32376	22066	18768	18769	39734	39734					0.08750917175939321
PHTIVLVMRF	10	Unmodified	_PHTIVLVMRF_					0	0	0			REV__ENST00000535398.5_1_13:111298395-111353838:-|nuORF	REV__ENST00000535398.5_1_13:111298395-111353838:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.5835266113281	3	404.902238	1211.68488	-0.010009	-4.0528E-06	3.5927	0.0014547	3.5827	0.0014507	404.903647029757	19.763	0.50659	19.707	19.423	19.93	-0.055693					21	17	2	0	0	0	0.32068	1	2363	2363		3.5871	0.59182	1	21770	+		32377	22066	18768	18769	39735	39735					0.08750917175939321
PHTPPIQL	8	Unmodified	_PHTPPIQL_					0	0	0			REV__nc|ENSG00000114626|Q969K4-4|ABTB1	REV__nc|ENSG00000114626|Q969K4-4|ABTB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7707214355469	2	451.758352	901.502152	0.44172	0.00019955	-0.7421	-0.00033525	-0.30038	-0.0001357	451.7580256821232	83.619	1.1258	83.619	82.782	83.908	0					68	42	2	0	0	0	0.42758	1	21930	21930		13.508	0.97634	1	79712	+		32378	22955	18769	18770	39736	39736					0.047461061056765175
PHVCRLLGI	9	Unmodified	_PHVCRLLGI_					0	0	0		ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	ENSG00000146648|ENST00000275493|EGFR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7945556640625	2	504.294579	1006.57461	0.49108	0.00024765	2.7156	0.0013695	3.2067	0.0016171	504.2957631616921	85.376	0.67668	85.457	85.075	85.751	0.080887					48	25	3	0	0	0	0.25417	1	22427	22427		8.5933	8.5933	1	155540			32379	4720	18770	18771	39737	39737					0.07158116907589829
PHVMAFLNFV	10	Unmodified	_PHVMAFLNFV_					0	0	0			REV__ENST00000221327.8_1_19:44981766-44981880:-|nuORF	REV__ENST00000221327.8_1_19:44981766-44981880:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.810302734375	2	587.807519	1173.60049	0.29571	0.00017382	0.86858	0.00051056	1.1643	0.00068438	587.8091380741954	69.776	0.78223	69.754	69.435	70.217	-0.022087					87	28	4	0	0	0	0.33817	1	17591	17591		14.838	1.7958	1	1007000	+		32380	19428	18771	18772	39738	39738					0.020629663591762437
PHVMAFLNFV	10	Unmodified	_PHVMAFLNFV_					0	0	0			REV__ENST00000221327.8_1_19:44981766-44981880:-|nuORF	REV__ENST00000221327.8_1_19:44981766-44981880:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.7744140625	2	587.807519	1173.60049	0.29571	0.00017382	0.86858	0.00051056	1.1643	0.00068438	587.8091380741954	69.776	0.78223	69.754	69.435	70.217	-0.022087					87	28	4	0	0	0	0.31629	1	17658	17658		10.074	2.9722	1	1007000	+		32381	19428	18771	18772	39739	39739					0.020629663591762437
PHVPGVTNL	9	Unmodified	_PHVPGVTNL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2632751464844	2	467.261259	932.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.7	1	115.7	115.2	116.2	0								0	0	0	0.2575	1	29977	29977		3.9444	1.0552	1				32382	12859	18772	18773	39740	39740					0.03901204617318399
PHVVLPLSL	9	Unmodified	_PHVVLPLSL_					0	0	0			REV__ENST00000506649.5_1_6:109702953-109703094:-|nuORF	REV__ENST00000506649.5_1_6:109702953-109703094:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.204833984375	2	487.805303	973.596052	0.93121	0.00045425	-0.40023	-0.00019524	0.53097	0.00025901	487.8050289186018	50.395	0.67603	50.415	50.064	50.74	0.020691					32	24	2	0	0	0	0.21137	1	11660	11660		24.674	2.9272	1	135520	+		32383	21752	18773	18774	39741	39741					0.10819825207954636
PHWICGKK	8	Unmodified	_PHWICGKK_					0	0	0		ENST00000548731.1_1_12:56544665-56551697:-|nuORF	ENST00000548731.1_1_12:56544665-56551697:-|nuORF	ENST00000548731.1_1_12:56544665-56551697:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.81646728515625	2	484.760372	967.506192	0.35466	0.00017193	0.95418	0.00046255	1.3088	0.00063447	484.761108690452	26.938	0.67044	26.926	26.595	27.266	-0.01156					33	23	2	0	0	0	0.34337	1	4430	4430		5.2307	1.2863	1	102880			32384	11777	18774	18775	39742	39742					0.021138723277204008
PHYHPSFF	8	Unmodified	_PHYHPSFF_					0	0	0		HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|462|3|anti-sense;HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|463|3|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|462|3|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|462|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7711181640625	2	516.240327	1030.4661	0.22162	0.00011441	-3.4171	-0.0017641	-3.1955	-0.0016497	516.739822223989	16.388	0.11111	16.388	16.322	16.433	0					5	3	2	0	0	0	0.34185	1	1316	1316		10.183	0.83596	1	12381			32385	12415	18775	18776	39743	39743					-0.047913510711850904
PIAASFNELL	10	Unmodified	_PIAASFNELL_					0	0	0			REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11	REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2958984375	2	537.795132	1073.57571	0.46107	0.00024796	-1.2586	-0.00067687	-0.79753	-0.00042891	537.7948598615045	86.608	0.64734	86.692	86.286	86.933	0.084251					40	26	2	0	0	0	0.36786	1	22720	22720		9.3831	0.035688	1	248440	+		32386	13174	18776	18777	39744	39744					0.0418660975747116
PIAKLKVGGI	10	Unmodified	_PIAKLKVGGI_					0	0	0			REV__nc|ENSG00000132437|P20711-2|DDC	REV__nc|ENSG00000132437|P20711-2|DDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.66168212890625	2	498.334227	994.653902	0.50252	0.00025042	-0.016075	-8.0109E-06	0.48644	0.00024241	498.3341725017851	76.477	0.48561	76.446	76.318	76.804	-0.031487					22	17	2	0	0	0	0.31847	1	19786	19786		6.7232	0.51738	1	138520	+		32387	15572	18777	18778	39745	39745					0.15636087133384535
PIAKRRLL	8	Unmodified	_PIAKRRLL_					0	0	0			REV__ENST00000301318.7_1_19:57059230-57060426:+|nuORF	REV__ENST00000301318.7_1_19:57059230-57060426:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.832275390625	2	483.832186	965.649819	0.38513	0.00018634	0.26499	0.00012821	0.65012	0.00031455	483.8321904170564	39.129	0.52502	39.228	38.986	39.511	0.099407					51	18	3	0	0	0	0.058048	1	8214	8214		74.396	7.0524	1	1304800	+		32388	19820	18778	18779	39746	39746					0.1656204243031425
PIALRSLLF	9	Unmodified	_PIALRSLLF_					0	0	0		ENST00000565698.5_2_16:28109346-28109856:-|nuORF	ENST00000565698.5_2_16:28109346-28109856:-|nuORF	ENST00000565698.5_2_16:28109346-28109856:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.3101806640625	2	515.326402	1028.63825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.01	1	69.988	69.488	70.488	-0.022087								0	0	0	0.21357	1	17709	17709		18.135	5.6034	1				32389	11968	18779	18780	39747	39747					0.1250780061632213
PIANEIYLN	9	Unmodified	_PIANEIYLN_					0	0	0		IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.8033447265625	2	523.779482	1045.54441	0.26465	0.00013862	-0.61462	-0.00032193	-0.34997	-0.00018331	523.7791960277378	59.655	0.47005	59.655	59.479	59.949	0					22	16	2	0	0	0	0.24913	1	14608	14608		12.532	1.4171	1	289340			32390	7927	18780	18781	39748	39748					0.023460367233838042
PIAPPQLGSP	10	Unmodified	_PIAPPQLGSP_					0	0	0			REV__nc|ENSG00000106829|Q04727-2|TLE4	REV__nc|ENSG00000106829|Q04727-2|TLE4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2925109863281	2	488.776742	975.538931	0.3733	0.00018246	-0.51641	-0.00025241	-0.14312	-6.9951E-05	488.77622880419005	30.272	0.56047	30.3	30.02	30.58	0.027946					39	19	3	0	0	0	0.29978	1	5551	5551		20.454	2.3073	1	248110	+		32391	14537	18781	18782	39749	39749					0.05018357931578521
PIAWANLMLF	10	Unmodified	_PIAWANLMLF_					0	0	0		ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.317626953125	2	588.31772	1174.62089	0.27399	0.00016119	-0.039354	-2.3152E-05	0.23464	0.00013804	588.3176764523948	21.833	1.324	21.783	21.461	22.785	-0.049377					123	46	4	0	0	0	0.38233	1	3161	3161		6.7232	0.99131	1	2490300			32392	6563	18782	18783	39750	39750					0.04056137019006201
PICGLGVGDNP	11	Unmodified	_PICGLGVGDNP_					0	0	0		ENST00000315732.2_1_1:36859127-36859343:-|nuORF	ENST00000315732.2_1_1:36859127-36859343:-|nuORF	ENST00000315732.2_1_1:36859127-36859343:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7945556640625	2	521.255317	1040.49608	0.52904	0.00027577	-1.0632	-0.00055419	-0.53415	-0.00027843	522.2564457504238	76.881	0.22905	76.881	76.782	77.011	0					14	8	3	0	0	0	0.32667	1	19841	19841		8.7454	0	1	146420			32393	9354	18783	18784	39751	39751					-0.022547801881728446
PICLLLVV	8	Unmodified	_PICLLLVV_					0	0	0			REV__ENSG00000185825|ENST00000345046|BCAP31	REV__ENSG00000185825|ENST00000345046|BCAP31	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2887268066406	2	435.280075	868.545597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.312	1	92.312	91.812	92.812	0.00046539								0	0	0	0.35779	1	24541	24541		11.114	1.767	1		+		32394	18412	18784	18785	39752	39752					0.10606579558577778
PICWYYLLF	9	Unmodified	_PICWYYLLF_					0	0	0			REV__nc|ENSG00000112499|O15244-2|SLC22A2	REV__nc|ENSG00000112499|O15244-2|SLC22A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.9154052734375	3	406.540306	1216.59909	-0.56743	-0.00023068	0.69376	0.00028204	0.12633	5.1359E-05	406.54051176900776	34.345	0.53726	34.345	34.135	34.672	0					44	18	3	0	0	0	0.24848	1	6759	6759		9.3831	1.2276	1	180400	+		32395	14779	18785	18786	39753	39753					-0.000546677295687914
PICWYYLLF	9	Unmodified	_PICWYYLLF_					0	0	0			REV__nc|ENSG00000112499|O15244-2|SLC22A2	REV__nc|ENSG00000112499|O15244-2|SLC22A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.9153747558594	3	406.540306	1216.59909	-0.41301	-0.00016791	0.74051	0.00030105	0.3275	0.00013314	406.5406233802839	34.223	0.6083	34.289	34.04	34.648	0.06636					49	21	3	0	0	0	0.24848	1	6717	6717		5.7319	0	1	186940	+		32396	14779	18785	18786	39754	39754					-0.000546677295687914
PIDEPWRR	8	Unmodified	_PIDEPWRR_					0	0	0			REV__ENST00000393328.6_1_17:47677417-47677549:-|nuORF	REV__ENST00000393328.6_1_17:47677417-47677549:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2816772460938	2	534.78289	1067.55123	0.5334	0.00028525	1.7798	0.00095179	2.3132	0.001237	534.7839654289379	84.041	0.92895	84.118	83.898	84.827	0.077095					44	36	2	0	0	0	0.34218	1	22186	22186		9.3474	1.4373	1	248480	+		32397	20604	18786	18787	39755	39755					0.020153943946070285
PIDKYQHHGDS	11	Unmodified	_PIDKYQHHGDS_					0	0	0			REV__nc|ENSG00000204406|Q9P267-2|MBD5	REV__nc|ENSG00000204406|Q9P267-2|MBD5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.2132263183594	3	432.870431	1295.58946	0.082333	3.5639E-05	3.5687	0.0015448	3.651	0.0015804	432.87178062869486	52.505	0.21653	52.556	52.465	52.682	0.050575					9	7	2	0	0	0	0.32951	1	12356	12356		10.315	6.7282	1	130040	+		32398	18941	18787	18788	39756	39756					-0.046507644814028026
PIDLAQKF	8	Unmodified	_PIDLAQKF_					0	0	0		THSD1|p.D742Vfs*6|1|0.1|ENSG00000136114|chr13:52377745-52377745|T/-|frameshift_variant;nc|ENSG00000136114|Q9NS62-2|THSD1;ENSG00000136114|ENST00000258613|THSD1;nc|ENSG00000136114|Q9NS62-3|THSD1	THSD1|p.D742Vfs*6|1|0.1|ENSG00000136114|chr13:52377745-52377745|T/-|frameshift_variant	THSD1|p.D742Vfs*6|1|0.1|ENSG00000136114|chr13:52377745-52377745|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.25311279296875	2	466.26601	930.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.452	1	32.507	32.007	33.007	0.054371								0	0	0	0.30279	1	6180	6180		28.487	1.6032	1				32399	3943	18788	18789	39757	39757					0.049429729028588554
PIDPDTLTL	9	Unmodified	_PIDPDTLTL_					0	0	0		nc|ENSG00000109667|Q9NRM0-2|SLC2A9;ENSG00000109667|ENST00000264784|SLC2A9;ENST00000505506.1_1_4:9997497-10020676:-|nuORF;ENST00000505104.5_1_4:9882098-10027590:-|nuORF	nc|ENSG00000109667|Q9NRM0-2|SLC2A9	nc|ENSG00000109667|Q9NRM0-2|SLC2A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2868957519531	2	492.76604	983.517527	0.25483	0.00012557	-0.31577	-0.0001556	-0.060941	-3.003E-05	492.7660659974666	69.62	1.792	69.598	69.209	71.001	-0.022087					200	64	5	0	0	0	0.14076	1	17531	17531		32.305	4.6767	1	18932000			32400	2263	18789	18790	39758	39758					0.02510928112201327
PIDQGLSMAI	10	Unmodified	_PIDQGLSMAI_					0	0	0			REV__ENST00000218328.12_1_X:53611240-53681066:-|nuORF	REV__ENST00000218328.12_1_X:53611240-53681066:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.773681640625	2	522.773342	1043.53213	0.60176	0.00031458	0.30215	0.00015796	0.90391	0.00047254	522.7733411487729	91.466	0.59551	91.467	91.236	91.832	0.00046539					83	38	3	0	0	0	0.36786	1	24373	24373		9.3831	2.0939	1	368920	+		32401	13980	18790	18791	39759	39759					0.012106769886941038
PIDRAKEIRVI	11	Unmodified	_PIDRAKEIRVI_					0	0	0			REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.26983642578125	3	437.269866	1308.78777	-0.098392	-4.3024E-05	-0.34805	-0.00015219	-0.44644	-0.00019522	437.26982122658313	22.135	0.67218	22.135	21.922	22.594	0					62	23	4	0	0	0	0.4112	1	3060	3060		9.7643	0	1	293080	+		32402	13760	18791	18792	39760	39760					0.14572701168253843
PIDSLFQAI	9	Unmodified	_PIDSLFQAI_					0	0	0			REV__ENST00000465181.1_1_3:38170823-38175531:-|nuORF	REV__ENST00000465181.1_1_3:38170823-38175531:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.78704833984375	2	502.276575	1002.5386	0.3798	0.00019077	-1.0532	-0.000529	-0.6734	-0.00033824	502.2762525378135	71.564	2.7099	71.564	71.262	73.972	0					123	97	2	0	0	0	0.2451	1	18915	18915		15.847	3.3156	1	276190	+		32403	13622	18792	18793	39761	39761					0.03742938211712499
PIDSLFQAI	9	Unmodified	_PIDSLFQAI_					0	0	0			REV__ENST00000465181.1_1_3:38170823-38175531:-|nuORF	REV__ENST00000465181.1_1_3:38170823-38175531:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	502.276575	1002.5386	0.3844	0.00019307	-1.3556	-0.00068089	-0.9712	-0.00048781	502.77711958783993	71.404	1.3487	71.463	71.115	72.464	0.05822	-0.14271	-0.00026147	NaN	15.847	78	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245310	+		32404	13622	18792	18793							0.03742938211712499
PIDSLFQAI	9	Unmodified	_PIDSLFQAI_					0	0	0			REV__ENST00000465181.1_1_3:38170823-38175531:-|nuORF	REV__ENST00000465181.1_1_3:38170823-38175531:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	502.276575	1002.5386	0.4299	0.00021593	-0.99104	-0.00049778	-0.56114	-0.00028185	502.2762827712447	71.816	1.2254	71.789	71.57	72.795	-0.027275	0.18378	0.00010475	NaN	15.847	66	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153300	+		32405	13622	18792	18793							0.03742938211712499
PIEFGVSPKD	10	Unmodified	_PIEFGVSPKD_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7825317382812	2	544.784764	1087.55498	0.45349	0.00024706	-2.7632	-0.0015053	-2.3097	-0.0012583	544.7834040607804	21.783	0.94176	21.783	21.31	22.252	0					47	33	2	0	0	0	0.32033	1	2859	2859		3.5965	0.31518	1	109440			32406	13007	18793	18794	39762	39762					0.014700193778253379
PIEFGVSPKD	10	Unmodified	_PIEFGVSPKD_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.784764	1087.55498	0.63624	0.00034661	-2.9283	-0.0015953	-2.2921	-0.0012487	544.7834033372322	21.863	1.0001	21.763	21.308	22.308	-0.10034	-0.023338	-6.4497E-05	NaN	9.3831	54	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96895			32407	13007	18793	18794							0.014700193778253379
PIERIRNF	8	Unmodified	_PIERIRNF_					0	0	0			REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7902221679688	2	522.801083	1043.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.01	1	55.073	54.573	55.573	0.063202								0	0	0	0.34229	1	13104	13104		18.135	1.9859	1		+		32408	16389	18794	18795	39763	39763					0.06756271291305893
PIFDAPPAQK	10	Unmodified	_PIFDAPPAQK_					0	0	0			REV__nc|ENSG00000096093|Q5JVL4-2|EFHC1	REV__nc|ENSG00000096093|Q5JVL4-2|EFHC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8114624023438	2	542.295299	1082.57605	0.087029	4.7195E-05	-0.050936	-2.7622E-05	0.036093	1.9573E-05	542.2951559097579	38.957	0.41684	38.957	38.623	39.04	0					21	14	2	0	0	0	0.30958	1	8136	8136		19.257	2.1441	1	297140	+		32409	14111	18795	18796	39764	39764					0.03806029477323136
PIFDAPPAQK	10	Unmodified	_PIFDAPPAQK_					0	0	0			REV__nc|ENSG00000096093|Q5JVL4-2|EFHC1	REV__nc|ENSG00000096093|Q5JVL4-2|EFHC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.811279296875	2	542.295299	1082.57605	0.73998	0.00040129	-0.63665	-0.00034525	0.10334	5.604E-05	542.2948516598269	38.774	0.42221	38.873	38.652	39.074	0.099403					21	14	2	0	0	0	0.31267	1	8116	8116		10.074	0	1	177500	+		32410	14111	18795	18796	39765	39765					0.03806029477323136
PIFDAPPAQK	10	Unmodified	_PIFDAPPAQK_					0	0	0			REV__nc|ENSG00000096093|Q5JVL4-2|EFHC1	REV__nc|ENSG00000096093|Q5JVL4-2|EFHC1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	542.295299	1082.57605	0.46137	0.0002502	-0.76286	-0.00041369	-0.30149	-0.0001635	542.2946075113882	38.821	0.55181	38.913	38.675	39.226	0.09267	-0.0010002	-0.00030394	NaN	19.257	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206170	+		32411	14111	18795	18796							0.03806029477323136
PIFETYEKI	9	Unmodified	_PIFETYEKI_					0	0	0		ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.3023681640625	2	570.30279	1138.59103	-0.15759	-8.9872E-05	-0.46932	-0.00026765	-0.6269	-0.00035752	570.3024963230399	25.241	0.788	25.21	24.862	25.65	-0.031408					69	27	3	0	0	0	0.33276	1	4051	4051		3.9444	0	1	425010			32412	8392	18796	18797	39766	39766					0.02727476554673558
PIFETYEKI	9	Unmodified	_PIFETYEKI_					0	0	0		ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	570.30279	1138.59103	0.17075	9.7377E-05	-0.83212	-0.00047456	-0.66137	-0.00037718	570.3023098418424	25.145	0.8661	25.145	24.817	25.683	0	-0.033639	-0.00018351	NaN	3.9444	70	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501530			32413	8392	18796	18797							0.02727476554673558
PIFETYEKI	9	Unmodified	_PIFETYEKI_					0	0	0		ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	570.30279	1138.59103	-0.15759	-8.9872E-05	-0.46932	-0.00026765	-0.6269	-0.00035752	570.3024963230399	25.241	0.788	25.21	24.862	25.65	-0.031408	0.031426	0.0002303	NaN	3.9444	69	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	425010			32414	8392	18796	18797							0.02727476554673558
PIFGRYKP	8	Unmodified	_PIFGRYKP_					0	0	0		nc|ENSG00000167930|Q9H0X4-2|FAM234A;ENSG00000167930|ENST00000399932|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2925720214844	2	489.281995	976.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.451	1	30.451	29.951	30.951	0								0	0	0	0.35014	1	5574	5574		14.582	3.7578	1				32415	6222	18797	18798	39767	39767					0.060223853766501634
PIFIWTLFSFY	11	Unmodified	_PIFIWTLFSFY_					0	0	0			REV__ENSG00000282608|ENST00000241356|ADORA3	REV__ENSG00000282608|ENST00000241356|ADORA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.74920654296875	3	478.588313	1432.74311	0.12142	5.8108E-05	0.15223	7.2853E-05	0.27364	0.00013096	478.588544911725	43.774	0.70273	43.774	43.441	44.143	0					42	25	2	0	0	0	0.3322	1	9735	9735		2.6312	0	1	595440	+		32416	19362	18798	18799	39768	39768					0.044048773022268506
PIFLLARFELW	11	Unmodified	_PIFLLARFELW_					0	0	0			REV__ENST00000517330.1_1_5:77338566-77338725:-|nuORF	REV__ENST00000517330.1_1_5:77338566-77338725:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.2585754394531	3	468.939458	1403.79654	0.29443	0.00013807	-2.4811	-0.0011635	-2.1866	-0.0010254	468.9378500016109	44.57	0.41335	44.639	44.298	44.711	0.068569					17	14	2	0	0	0	0.33326	1	9811	9811		1.4551	0	1	194030	+		32417	21851	18799	18800	39769	39769					0.11079674804750539
PIFLLARFELW	11	Unmodified	_PIFLLARFELW_					0	0	0			REV__ENST00000517330.1_1_5:77338566-77338725:-|nuORF	REV__ENST00000517330.1_1_5:77338566-77338725:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	468.939458	1403.79654	0.31749	0.00014888	-3.5194	-0.0016504	-3.2019	-0.0015015	468.9378282644605	44.762	0.30039	44.762	44.581	44.881	0	0.061423	-0.0003582	NaN	1.4551	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111140	+		32418	21851	18799	18800							0.11079674804750539
PIFLLFSRPPL	11	Unmodified	_PIFLLFSRPPL_					0	0	0			REV__ENST00000369827.7_1_1:110217476-110217722:+|nuORF	REV__ENST00000369827.7_1_1:110217476-110217722:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.9330749511719	3	433.932303	1298.77508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.063	1	87.063	86.563	87.563	0								0	0	0	0.37548	1	22941	22941		2.6312	0.72486	1		+		32419	20364	18800	18801	39770	39770					0.13764289776031546
PIFPALIYS	9	Unmodified	_PIFPALIYS_					0	0	0		nc|ENSG00000288674|P49810-3|PSEN2;ENSG00000143801|ENST00000366783|PSEN2	nc|ENSG00000288674|P49810-3|PSEN2	nc|ENSG00000288674|P49810-3|PSEN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.808349609375	2	510.791861	1019.56917	0.50924	0.00026011	-2.2955	-0.0011725	-1.7863	-0.00091242	511.29157244782857	53.091	0.94031	53.147	52.8	53.74	0.056255					97	34	5	0	0	0	0.20344	1	12607	12607		23.148	0.41214	1	1424400			32420	4548	18801	18802	39771	39771					0.06016716596752758
PIFSTSGLLL	10	Unmodified	_PIFSTSGLLL_					0	0	0			REV__ENST00000495285.1_1_3:197257612-197260782:-|nuORF	REV__ENST00000495285.1_1_3:197257612-197260782:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3074340820312	2	524.307875	1046.6012	0.72711	0.00038123	-0.82008	-0.00042998	-0.092968	-4.8744E-05	524.3069592156684	84.812	1.4048	84.812	84.057	85.462	0					88	53	3	0	0	0	0.18807	1	22261	22261		34.102	1.797	1	389030	+		32421	16936	18802	18803	39772	39772					0.07976084279903262
PIFVQALTL	9	Unmodified	_PIFVQALTL_					0	0	0		nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF;ENSG00000134851|ENST00000381334|TMEM165;ENST00000509575.1_1_4:56284047-56290818:+|nuORF	nc|ENSG00000134851|Q9HC07-2|TMEM165	nc|ENSG00000134851|Q9HC07-2|TMEM165	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2864990234375	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.654	1	80.627	80.127	81.127	-0.026825								0	0	0	0.21726	1	20955	20955		16.942	1.0951	1				32422	3819	18803	18804	39773	39773					0.09544405488077246
PIGFIAYLIC	10	Unmodified	_PIGFIAYLIC_					0	0	0			REV__nc|ENSG00000100433|P57789|KCNK10	REV__nc|ENSG00000100433|P57789|KCNK10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2938842773438	2	555.306821	1108.59909	-0.12309	-6.8355E-05	-0.43808	-0.00024327	-0.56117	-0.00031162	555.3066269541672	13.656	0.35663	13.588	13.416	13.773	-0.067432					35	12	4	0	0	0	0.40888	1	539	539		1.8442	0.19162	1	131050	+		32423	14198	18804	18805	39774	39774					0.049133322704619786
PIGLRIPL	8	Unmodified	_PIGLRIPL_					0	0	0		nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-11|ANK1;ENST00000524227.5_1_8:41525962-41555361:-|nuORF	nc|ENSG00000029534|P16157-14|ANK1	nc|ENSG00000029534|P16157-14|ANK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.7947692871094	2	439.794738	877.574923	-0.12722	-5.5951E-05	0.12371	5.4407E-05	-0.0035112	-1.5442E-06	439.7946811837916	59.623	1.1184	59.623	59.241	60.359	0					84	39	3	0	0	0	0.1843	1	14475	14475		45.75	5.3014	1	960290			32424	547	18805	18806	39775	39775					0.13123859899098989
PIGLRIPL	8	Unmodified	_PIGLRIPL_					0	0	0		nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-11|ANK1;ENST00000524227.5_1_8:41525962-41555361:-|nuORF	nc|ENSG00000029534|P16157-14|ANK1	nc|ENSG00000029534|P16157-14|ANK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.7946472167969	2	439.794738	877.574923	-0.11706	-5.1482E-05	0.12487	5.4919E-05	0.0078152	3.4371E-06	439.79470239824803	59.462	0.91685	59.557	59.16	60.077	0.095093					75	32	3	0	0	0	0.1843	1	14440	14440		45.75	2.782	1	1153800			32425	547	18805	18806	39776	39776					0.13123859899098989
PIGPLIQL	8	Unmodified	_PIGPLIQL_					0	0	0			REV__ENST00000574946.5_1_17:6025582-6025684:+|nuORF	REV__ENST00000574946.5_1_17:6025582-6025684:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.7733154296875	2	425.773471	849.53239	-0.026956	-1.1477E-05	-0.16054	-6.8352E-05	-0.18749	-7.9829E-05	425.7733544156136	74.129	0.8755	74.129	73.828	74.703	0					45	29	2	0	0	0	0.12267	1	18999	18999		56.541	0	1	667900	+		32426	22438	18806	18807	39777	39777					0.10160464770854105
PIGPPPMF	8	Unmodified	_PIGPPPMF_					0	0	0			REV__nc|ENSG00000110844|Q6NWY9-3|PRPF40B	REV__nc|ENSG00000110844|Q6NWY9-3|PRPF40B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.9103698730469	2	428.2253	854.436046	-0.22829	-9.7758E-05	-0.2837	-0.00012149	-0.51199	-0.00021925	428.2253789815136	31.23	0.61345	31.23	30.889	31.502	0					38	21	3	0	0	0	0.34297	1	5822	5822		6.3541	6.3541	1	87074	+		32427	14685	18807	18808	39778	39778					0.003005739392619944
PIGPVKFELF	10	Unmodified	_PIGPVKFELF_					0	0	0			REV__ENSG00000197165|ENST00000335715|SULT1A2	REV__ENSG00000197165|ENST00000335715|SULT1A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8311157226562	2	573.831517	1145.64848	0.41335	0.0002372	-0.51405	-0.00029498	-0.10069	-5.7781E-05	573.8309761773982	86.677	0.83496	86.764	86.398	87.233	0.08709					65	34	2	0	0	0	0.38515	1	22825	22825		6.2058	0	1	209120	+		32428	18716	18808	18809	39779	39779					0.08148363550890281
PIGQIPLE	8	Unmodified	_PIGQIPLE_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.8072814941406	2	433.752736	865.490919	-0.0094361	-4.0929E-06	-0.23055	-0.0001	-0.23998	-0.00010409	433.75258788118816	65.534	0.76268	65.534	65.218	65.981	0					49	27	2	0	0	0	0.34092	1	16296	16296		13.508	0	1	432000			32429	7830	18809	18810	39780	39780					0.05279284011521668
PIGQIPLE	8	Unmodified	_PIGQIPLE_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.8072814941406	2	433.752736	865.490919	-0.25138	-0.00010904	0.17874	7.753E-05	-0.072635	-3.1506E-05	433.75274836533424	65.451	0.70464	65.54	65.216	65.921	0.088882					44	25	2	0	0	0	0.34092	1	16261	16261		13.508	0	1	389750			32430	7830	18809	18810	39781	39781					0.05279284011521668
PIGRRLFRQF	10	Unmodified	_PIGRRLFRQF_					0	0	0		nc|ENSG00000125388|P32298-3|GRK4;nc|ENSG00000125388|P32298-4|GRK4;nc|ENSG00000125388|P32298-2|GRK4;ENSG00000125388|ENST00000398052|GRK4	nc|ENSG00000125388|P32298-3|GRK4	nc|ENSG00000125388|P32298-3|GRK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.7289428710938	2	645.383106	1288.75166	0.35353	0.00022816	-2.3144	-0.0014937	-1.9609	-0.0012655	645.3814490052811	55.473	0.38192	55.473	55.35	55.732	0					20	13	2	0	0	0	0.32009	1	13214	13214		3.9444	1.4459	1	182350			32431	3202	18810	18811	39782	39782					0.11883288782064483
PIGTVPHIDL	10	Unmodified	_PIGTVPHIDL_					0	0	0			REV__nc|ENSG00000073060|Q8WTV0-3|SCARB1	REV__nc|ENSG00000073060|Q8WTV0-3|SCARB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.81689453125	2	531.303124	1060.5917	0.47228	0.00025092	0.61483	0.00032666	1.0871	0.00057758	531.3034363228119	81.468	0.53985	81.468	81.28	81.82	0					35	23	2	0	0	0	0.3641	1	21294	21294		10.074	0.6908	1	194700	+		32432	13770	18811	18812	39783	39783					0.06382315994369492
PIGTVPHIDL	10	Unmodified	_PIGTVPHIDL_					0	0	0			REV__nc|ENSG00000073060|Q8WTV0-3|SCARB1	REV__nc|ENSG00000073060|Q8WTV0-3|SCARB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.81689453125	2	531.303124	1060.5917	0.48531	0.00025785	0.73013	0.00038792	1.2154	0.00064577	531.3034417210995	81.546	0.56544	81.522	81.205	81.77	-0.024048					38	24	2	0	0	0	0.36786	1	21295	21295		9.3831	3.1773	1	254310	+		32433	13770	18811	18812	39784	39784					0.06382315994369492
PIGVTWIK	8	Unmodified	_PIGVTWIK_					0	0	0			REV__nc|ENSG00000119121|Q9BX84-7|TRPM6	REV__nc|ENSG00000119121|Q9BX84-7|TRPM6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2643737792969	2	457.278921	912.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.54	1	84.621	84.121	85.121	0.080887								0	0	0	0.36623	1	22160	22160		7.2892	0	1		+		32434	15028	18812	18813	39785	39785					0.08351867145131564
PIHAPLVWVD	10	Unmodified	_PIHAPLVWVD_					0	0	0			REV__ENST00000509613.1_1_X:52928554-52936179:+|nuORF	REV__ENST00000509613.1_1_X:52928554-52936179:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.2902221679688	2	573.818941	1145.62333	-0.19945	-0.00011445	-0.13148	-7.5445E-05	-0.33093	-0.00018989	573.8187195200134	12.152	0.11939	12.084	11.999	12.118	-0.06806					12	6	2	0	0	0	0.40992	1	21	21		1.6526	0	1	32180	+		32435	21793	18813	18814	39786	39786					0.0563430874833557
PIHAPLVWVD	10	Unmodified	_PIHAPLVWVD_					0	0	0			REV__ENST00000509613.1_1_X:52928554-52936179:+|nuORF	REV__ENST00000509613.1_1_X:52928554-52936179:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.2902221679688	2	573.818941	1145.62333	-0.19945	-0.00011445	-0.13148	-7.5445E-05	-0.33093	-0.00018989	573.8187195200134	12.152	0.11939	12.084	11.999	12.118	-0.06806					12	6	2	0	0	0	0.32123	1	21	21		1.6526	0	1	32180	+		32436	21793	18813	18814	39787	39787					0.0563430874833557
PIHKICNAIL	10	Unmodified	_PIHKICNAIL_					0	0	0			REV__ENST00000439585.1_1_X:67991699-67992065:+|nuORF	REV__ENST00000439585.1_1_X:67991699-67992065:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.31640625	2	561.328619	1120.64269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.087	1	94.087	93.587	94.587	0								0	0	0	0.35948	1	25081	25081		10.824	2.9138	1		+		32437	21038	18814	18815	39788	39788					0.08718941767574506
PIHKICNAIL	10	Unmodified	_PIHKICNAIL_					0	0	0			REV__ENST00000439585.1_1_X:67991699-67992065:+|nuORF	REV__ENST00000439585.1_1_X:67991699-67992065:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.316162109375	2	561.328619	1120.64269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.58	1	94.578	94.078	95.078	-0.0020142								0	0	0	0.35948	1	25235	25235		10.824	2.2306	1		+		32438	21038	18814	18815	39789	39789					0.08718941767574506
PIHKMRVTF	9	Unmodified	_PIHKMRVTF_					0	0	0			REV__ENST00000450390.6_1_1:1189931-1190276:-|nuORF	REV__ENST00000450390.6_1_1:1189931-1190276:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8222045898438	2	564.820961	1127.62737	0.2471	0.00013957	0.58076	0.00032802	0.82786	0.00046759	564.8211007283917	80.441	2.0633	80.441	79.495	81.558	0					209	86	3	0	0	0	0.33018	1	21021	21021		4.3292	0	1	2302400	+		32439	21113	18815	18816	39790	39790					0.06866074970389491
PIHKMRVTF	9	Unmodified	_PIHKMRVTF_					0	0	0			REV__ENST00000450390.6_1_1:1189931-1190276:-|nuORF	REV__ENST00000450390.6_1_1:1189931-1190276:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.8202514648438	2	564.820961	1127.62737	0.27282	0.0001541	0.35658	0.00020141	0.62941	0.0003555	564.8209904792535	80.412	2.9878	80.385	79.523	82.511	-0.026825					328	118	4	0	0	0	0.33276	1	20923	20923		3.9444	3.9444	1	2120200	+		32440	21113	18815	18816	39791	39791					0.06866074970389491
PIHNTAPLF	9	Unmodified	_PIHNTAPLF_					0	0	0			REV__ENST00000267023.8_1_12:56622998-56623055:+|nuORF	REV__ENST00000267023.8_1_12:56622998-56623055:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.78436279296875	2	505.276909	1008.53927	0.41029	0.00020731	-1.3751	-0.00069478	-0.96476	-0.00048747	505.2763600401608	64.365	1.3159	64.458	63.958	65.274	0.09288					79	48	3	0	0	0	0.20651	1	15873	15873		26.884	5.137	1	269220	+		32441	19657	18816	18817	39792	39792					0.03533777651409764
PIHSHDCCGPF	11	Unmodified	_PIHSHDCCGPF_					0	0	0			REV__ENST00000374270.7_1_9:114803757-114814695:-|nuORF	REV__ENST00000374270.7_1_9:114803757-114814695:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.8355712890625	3	404.835676	1211.4852	-0.31945	-0.00012932	0.085541	3.463E-05	-0.2339	-9.4693E-05	404.8356949310629	29.652	0.6411	29.665	29.454	30.095	0.013474					49	21	3	0	0	0	0.46392	1	5336	5336		2.8433	0.10809	1	217430	+		32442	20187	18817	18818	39793	39793					-0.11208505834110838
PIHVSTRW	8	Unmodified	_PIHVSTRW_					0	0	0			REV__ENST00000546295.1_2:218664879-218665220:-|nuORF	REV__ENST00000546295.1_2:218664879-218665220:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.26702880859375	2	498.274701	994.534849	0.20717	0.00010323	-2.9027	-0.0014464	-2.6956	-0.0013431	498.2735001953801	17.728	0.63858	17.668	17.53	18.169	-0.060429					35	22	2	0	0	0	0.3439	1	1676	1676		2.8892	0	1	40482	+		32443	22167	18818	18819	39794	39794					0.03736313228512245
PIICPLTI	8	Unmodified	_PIICPLTI_					0	0	0			REV__ENSG00000197565|ENST00000334504|COL4A6	REV__ENSG00000197565|ENST00000334504|COL4A6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2518005371094	2	435.261882	868.509211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.807	1	71.78	71.28	72.28	-0.027275								0	0	0	0.35014	1	18259	18259		14.582	5.2343	1		+		32444	18745	18819	18820	39795	39795					0.06969702661854171
PIIGFISAT	9	Unmodified	_PIIGFISAT_					0	0	0			REV__ENSG00000033800|ENST00000249636|PIAS1	REV__ENSG00000033800|ENST00000249636|PIAS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.56658935546875	2	459.768386	917.522219	0.27765	0.00012766	3.0063	0.0013822	3.284	0.0015099	459.7685834311512	48.297	0.26171	48.297	48.156	48.417	0					9	8	2	0	0	0	0.25417	1	11010	11010		2.0598	0	1	71035	+		32445	13504	18820	18821	39796	39796					0.060158570455996596
PIIKRETL	8	Unmodified	_PIIKRETL_					0	0	0		ENST00000558439.5_1_15:51226794-51242057:+|nuORF;nc|ENSG00000081014|Q9UPM8-2|AP4E1;ENSG00000081014|ENST00000261842|AP4E1	ENST00000558439.5_1_15:51226794-51242057:+|nuORF	ENST00000558439.5_1_15:51226794-51242057:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.30821	968.601866	0.18714	9.0819E-05	0.1512	7.3377E-05	0.33833	0.0001642	485.3082263202615	59.216	0.79725	59.216	58.682	59.479	0					48	27	2	0	0	0	0.3408	1	14244	14244		14.838	0	1	195220			32446	1173	18821	18822	39797	39797					0.11630923719621933
PIINRPLL	8	Unmodified	_PIINRPLL_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2889709472656	2	468.30547	934.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.257	1	73.311	72.811	73.811	0.053833								0	0	0	0.34461	1	18706	18706		17.087	5.9721	1		+		32447	22330	18822	18823	39798	39798					0.12647244927802603
PIIRTLWQ	8	Unmodified	_PIIRTLWQ_					0	0	0			REV__ENST00000307602.8_1_8:42875919-42876063:+|nuORF	REV__ENST00000307602.8_1_8:42875919-42876063:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8245239257812	2	513.808377	1025.6022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.268	1	13.2	12.7	13.7	-0.067496								0	0	0	0.37825	1	373	373		1.8442	0	1		+		32448	19868	18823	18824	39799	39799					0.09042343439477918
PIIYNFLVM	9	Unmodified	_PIIYNFLVM_					0	0	0			REV__ENST00000459908.5_1_13:113439469-113512287:+|nuORF	REV__ENST00000459908.5_1_13:113439469-113512287:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2940063476562	2	555.306821	1108.59909	-0.051729	-2.8726E-05	-0.3017	-0.00016754	-0.35343	-0.00019626	555.3065002771401	13.598	0.43258	13.499	13.362	13.795	-0.099291					32	15	3	0	0	0	0.34536	1	550	550		2.0598	0.21551	1	127440	+		32449	13702	18824	18825	39800	39800					0.04913332270439241
PIKDLDDIR	9	Unmodified	_PIKDLDDIR_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2933349609375	2	542.803488	1083.59242	0.86046	0.00046706	2.7046	0.001468	3.565	0.0019351	543.3051123290438	34.04	0.38085	34.04	33.839	34.22	0					28	13	3	0	0	0	0.24581	1	6639	6639		16.942	0.79319	1	284190			32450	595	18825	18826	39801	39801					0.053971106434119065
PIKELEKKVW	10	Unmodified	_PIKELEKKVW_					0	0	0			REV__nc|ENSG00000089050|O75884-2|RBBP9	REV__nc|ENSG00000089050|O75884-2|RBBP9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	635.3841552734375	2	635.381906	1268.74926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.138	1	95.221	94.721	95.721	0.082779								0	0	0	0.36441	1	25402	25402		8.7454	3.0136	1		+		32451	14022	18826	18827	39802	39802					0.1256339553374346
PIKELEKKVW	10	Unmodified	_PIKELEKKVW_					0	0	0			REV__nc|ENSG00000089050|O75884-2|RBBP9	REV__nc|ENSG00000089050|O75884-2|RBBP9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	635.3834838867188	2	635.381906	1268.74926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.217	1	95.215	94.715	95.715	-0.0020142								0	0	0	0.36441	1	25431	25431		8.7454	3.0136	1		+		32452	14022	18826	18827	39803	39803					0.1256339553374346
PIKKKLLFLF	10	Unmodified	_PIKKKLLFLF_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.9166870117188	2	623.917927	1245.8213	-0.15988	-9.9749E-05	-0.83922	-0.0005236	-0.9991	-0.00062335	624.4191085945861	103.07	0.10886	103.08	103	103.11	0.0082626					22	15	2	0	0	0	0.41892	1	27406	27406		0	0	1	4604000	+		32453	17870	18827	18828	39804	39804					0.20822354678102784
PIKNKELVT	9	Unmodified	_PIKNKELVT_					0	0	0			REV__ENST00000525964.6_1_11:134022841-134052943:-|nuORF	REV__ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.6574096679688	2	521.318774	1040.623	0.79224	0.00041301	0.22445	0.00011701	1.0167	0.00053002	521.3190012037081	50.294	0.73801	50.339	49.695	50.433	0.044891					35	27	2	0	0	0	0.23784	1	11477	11477		2.9952	0	1	392390	+		32454	16545	18828	18829	39805	39805					0.10430889028475576
PIKWTAPEA	9	Unmodified	_PIKWTAPEA_					0	0	0		ENSG00000000938|ENST00000374005|FGR;ENST00000513777.1_1_5:108513310-108523273:+|nuORF;ENST00000491885.6_1_6:111982944-111997736:-|nuORF;ENST00000469765.5_1_1:32745435-32751314:+|nuORF;ENST00000526097.1_1_8:11418120-11421614:+|nuORF;nc|ENSG00000151422|P16591-3|FER;nc|ENSG00000254087|P07948-2|LYN;nc|ENSG00000101336|P08631-3|HCK;nc|ENSG00000101336|P08631-2|HCK;ENSG00000136573|ENST00000259089|BLK;ENSG00000254087|ENST00000519728|LYN;nc|ENSG00000101336|P08631-4|HCK;ENSG00000101336|ENST00000375852|HCK;nc|ENSG00000151422|P16591-2|FER;ENSG00000151422|ENST00000281092|FER;nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;ENSG00000176105|ENST00000314574|YES1;ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC;ENST00000493775.1_1_20:36030831-36031351:+|nuORF;ENST00000477066.5_1_20:36025122-36031779:+|nuORF;ENSG00000182866|ENST00000336890|LCK;nc|ENSG00000182866|P06239-3|LCK	ENSG00000000938|ENST00000374005|FGR;nc|ENSG00000010810|P06241-3|FYN;ENSG00000197122|ENST00000373578|SRC;ENSG00000182866|ENST00000336890|LCK	nc|ENSG00000010810|P06241-3|FYN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.79266357421875	2	506.776742	1011.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.925	1	24.925	24.425	25.425	0								0	0	0	0.19804	1	3897	3897		23.148	6.2061	1				32455	428;285;7931;7326	18829	18830	39806	39806					0.03362357931553106
PILARDNGIV	10	Unmodified	_PILARDNGIV_					0	0	0		ENSG00000135702|ENST00000336257|CHST5;nc|ENSG00000135702|Q9GZS9-2|CHST5	ENSG00000135702|ENST00000336257|CHST5	ENSG00000135702|ENST00000336257|CHST5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2954711914062	2	534.314023	1066.61349	0.69211	0.0003698	2.2264	0.0011896	2.9185	0.0015594	534.3148714633246	79.231	0.09787	79.202	79.128	79.226	-0.028931					5	3	2	0	0	0	0.31515	1	20502	20502		8.1555	1.4324	1	51825			32456	3897	18830	18831	39807	39807					0.08285120742925756
PILDRDPIF	9	Unmodified	_PILDRDPIF_					0	0	0			REV__ENSG00000169306|ENST00000378993|IL1RAPL1	REV__ENSG00000169306|ENST00000378993|IL1RAPL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.310546875	2	543.303124	1084.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.02	1	75.02	74.52	75.52	0								0	0	0	0.20238	1	19254	19254		21.747	0	1		+		32457	17510	18831	18832	39808	39808					0.05278315994360128
PILGHSYLVT	10	Unmodified	_PILGHSYLVT_					0	0	0		ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2844848632812	2	550.310949	1098.60735	0.34948	0.00019232	1.2322	0.0006781	1.5817	0.00087042	550.3113330995401	43.138	0.62582	43.222	42.896	43.522	0.083996					40	22	2	0	0	0	0.31889	1	9524	9524		6.2058	2.2614	1	367230			32458	8393	18832	18833	39809	39809					0.06198602511403806
PILGHSYLVT	10	Unmodified	_PILGHSYLVT_					0	0	0		ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	550.310949	1098.60735	0.3689	0.00020301	1.0356	0.00056988	1.4045	0.00077288	550.311155563343	43.565	0.67706	43.565	43.116	43.793	0	0.23501	6.9403E-06	NaN	6.2058	42	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332060			32459	8393	18832	18833							0.06198602511403806
PILGHSYLVT	10	Unmodified	_PILGHSYLVT_					0	0	0		ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	550.310949	1098.60735	0.60055	0.00033049	0.76759	0.00042241	1.3681	0.0007529	550.3110178625698	43.125	0.59845	43.202	42.943	43.541	0.077515	-0.12753	-0.00028799	NaN	6.2058	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309270			32460	8393	18832	18833							0.06198602511403806
PILGSPFFSHF	11	Unmodified	_PILGSPFFSHF_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.8851318359375	3	416.885241	1247.63389	-0.22989	-9.5839E-05	0.16343	6.8132E-05	-0.066461	-2.7707E-05	416.8852184630907	61.297	0.73236	61.297	61.128	61.86	0					52	27	3	0	0	0	0.42506	1	15119	15119		7.9454	1.7536	1	831290			32461	1402	18833	18834	39810	39810					0.01998291402742325
PILGSPFFSHF	11	Unmodified	_PILGSPFFSHF_					0	0	0		ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	ENSG00000091436|ENST00000375213|MAP3K20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.88507080078125	3	416.885241	1247.63389	-0.10105	-4.2128E-05	-0.13383	-5.579E-05	-0.23488	-9.7918E-05	416.885142734143	61.344	0.70103	61.441	61.14	61.841	0.096985					54	25	3	0	0	0	0.44713	1	15072	15072		5.0475	0.85802	1	764780			32462	1402	18833	18834	39811	39811					0.01998291402742325
PILKQERKQK	10	Unmodified	_PILKQERKQK_					0	0	0			REV__nc|ENSG00000126777|Q86UP2-2|KTN1;REV__KTN1|p.T183Lfs*41|1|0.58|ENSG00000126777|chr14:55616538-55616538|A/-|frameshift_variant	REV__nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.93939208984375	3	423.266345	1266.7772	-0.15965	-6.7576E-05	-4.1194	-0.0017436	-4.2791	-0.0018112	423.59912247070497	41.994	0.18465	41.994	41.9	42.085	0					7	5	2	0	0	0	0.3183	1	9127	9127		8.4443	0.96724	1	176570	+		32463	15322;22775	18834	18835	39812	39812					0.15448718513835047
PILLSRPGW	9	Unmodified	_PILLSRPGW_					0	0	0		nc|ENSG00000237232|Q8N0V1|ZNF295-AS1	nc|ENSG00000237232|Q8N0V1|ZNF295-AS1	nc|ENSG00000237232|Q8N0V1|ZNF295-AS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2688598632812	2	519.808377	1037.6022	0.42846	0.00022272	2.4742	0.0012861	2.9027	0.0015088	519.8093535347986	70.893	0.27809	70.893	70.711	70.989	0					12	9	2	0	0	0	0.1524	1	18017	18017		39.957	15.283	1	105410			32464	12961	18835	18836	39813	39813					0.0849034343943913
PILNNKEFI	9	Unmodified	_PILNNKEFI_					0	0	0		ENST00000494357.1_1_7:99170818-99170905:+|nuORF	ENST00000494357.1_1_7:99170818-99170905:+|nuORF	ENST00000494357.1_1_7:99170818-99170905:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7926635742188	2	544.310949	1086.60735	0.48045	0.00026152	-0.41122	-0.00022383	0.069238	3.7687E-05	544.3110216882325	58.054	1.5285	58.054	57.552	59.081	0					113	53	4	0	0	0	0.23007	1	13953	13953		19.257	0	1	1407000			32465	11207	18836	18837	39814	39814					0.06750602511419856
PILNVLRRE	9	Unmodified	_PILNVLRRE_					0	0	0			REV__ENST00000259253.10_1_2:128867259-128867307:+|nuORF	REV__ENST00000259253.10_1_2:128867259-128867307:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.7775268554688	2	555.343115	1108.67168	0.15599	8.663E-05	0.0073995	4.1093E-06	0.16339	9.074E-05	555.3430953014207	17.696	0.31516	17.635	17.502	17.817	-0.060429					18	10	2	0	0	0	0.26257	1	1720	1720		0.52476	0	1	35424	+		32466	19572	18837	18838	39815	39815					0.12168802388214317
PILQQKQLI	9	Unmodified	_PILQQKQLI_					0	0	0			REV__ENST00000360772.7_2_3:123332769-123332820:-|nuORF	REV__ENST00000360772.7_2_3:123332769-123332820:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8427124023438	2	540.842416	1079.67028	0.62538	0.00033823	0.46036	0.00024898	1.0857	0.00058721	540.8424740085819	63.782	0.49186	63.877	63.68	64.172	0.094135					25	17	2	0	0	0	0.23007	1	15829	15829		19.257	4.0085	1	183210	+		32467	20265	18838	18839	39816	39816					0.13363168299474637
PILQQKQLI	9	Unmodified	_PILQQKQLI_					0	0	0			REV__ENST00000360772.7_2_3:123332769-123332820:-|nuORF	REV__ENST00000360772.7_2_3:123332769-123332820:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	540.842416	1079.67028	0.66835	0.00036147	0.90219	0.00048794	1.5705	0.00084941	540.8424881784058	63.959	0.30386	63.959	63.722	64.026	0	0.033116	0.00034	NaN	19.257	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261780	+		32468	20265	18838	18839							0.13363168299474637
PILQQKQLI	9	Unmodified	_PILQQKQLI_					0	0	0			REV__ENST00000360772.7_2_3:123332769-123332820:-|nuORF	REV__ENST00000360772.7_2_3:123332769-123332820:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	540.842416	1079.67028	0.62538	0.00033823	0.46036	0.00024898	1.0857	0.00058721	540.8424740085819	63.782	0.49186	63.877	63.68	64.172	0.094135	-0.048852	-0.00013791	NaN	19.257	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183210	+		32469	20265	18838	18839							0.13363168299474637
PILQQKQLI	9	Unmodified	_PILQQKQLI_					0	0	0			REV__ENST00000360772.7_2_3:123332769-123332820:-|nuORF	REV__ENST00000360772.7_2_3:123332769-123332820:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	540.842416	1079.67028	0.75982	0.00041094	0.53391	0.00028876	1.2937	0.0006997	540.842519029994	63.951	0.40728	63.941	63.745	64.152	-0.0095291	0.015737	-5.8357E-05	NaN	19.257	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221590	+		32470	20265	18838	18839							0.13363168299474637
PILRKEAVM	9	Unmodified	_PILRKEAVM_					0	0	0			REV__ENST00000491035.5_1_X:153628724-153629192:+|nuORF	REV__ENST00000491035.5_1_X:153628724-153629192:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8319702148438	2	528.815344	1055.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.599	1	43.683	43.183	44.183	0.083996								0	0	0	0.22789	1	9580	9580		13.508	0	1		+		32471	16385	18839	18840	39817	39817					0.09055252876260056
PILRWQKERPW	11	Unmodified	_PILRWQKERPW_					0	0	0			REV__ENST00000329421.7_1_1:32800654-32801959:-|nuORF	REV__ENST00000329421.7_1_1:32800654-32801959:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2470397949219	3	503.62101	1507.8412	0.59524	0.00029977	1.2489	0.00062897	1.8441	0.00092874	503.9559814334127	32.307	0.26928	32.307	32.171	32.44	0					14	9	2	0	0	0	0.33346	1	6162	6162		0.50596	0	1	84776	+		32472	20028	18840	18841	39818	39818					0.1075949867079089
PILSTLTL	8	Unmodified	_PILSTLTL_					0	0	0			REV__ENSG00000198786|ENST00000361567|MT-ND5	REV__ENSG00000198786|ENST00000361567|MT-ND5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.2705383300781	2	429.270761	856.52697	0.039366	1.6899E-05	-0.18096	-7.768E-05	-0.14159	-6.0781E-05	429.27057670845915	76.937	1.0767	76.937	76.643	77.719	0					77	39	3	0	0	0	0.073545	1	19811	19811		67.035	0	1	1072800	+		32473	18860	18841	18842	39819	39819					0.09296741188370561
PILSTLTL	8	Unmodified	_PILSTLTL_					0	0	0			REV__ENSG00000198786|ENST00000361567|MT-ND5	REV__ENSG00000198786|ENST00000361567|MT-ND5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.2705993652344	2	429.270761	856.52697	-0.066979	-2.8752E-05	-0.12166	-5.2227E-05	-0.18864	-8.0979E-05	429.2706188826591	76.854	1.0677	76.907	76.641	77.708	0.053642					77	37	4	0	0	0	0.049524	1	19794	19794		78.445	0	1	1172700	+		32474	18860	18841	18842	39820	39820					0.09296741188370561
PILSTLTL	8	Unmodified	_PILSTLTL_					0	0	0			REV__ENSG00000198786|ENST00000361567|MT-ND5	REV__ENSG00000198786|ENST00000361567|MT-ND5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.27069091796875	2	429.270761	856.52697	0.21928	9.4132E-05	-0.38801	-0.00016656	-0.16873	-7.2431E-05	429.2704927157856	76.952	0.91891	76.921	76.654	77.573	-0.031334					70	33	4	0	0	0	0.049524	1	19870	19870		78.445	0	1	1077900	+		32475	18860	18841	18842	39821	39821					0.09296741188370561
PILTPPKQSE	10	Unmodified	_PILTPPKQSE_					0	0	0			REV__nc|ENSG00000171988|Q15652-2|JMJD1C	REV__nc|ENSG00000171988|Q15652-2|JMJD1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7271728515625	2	555.313689	1108.61282	0.34766	0.00019306	0.28497	0.00015825	0.63264	0.00035131	555.3149094795594	87.797	0.064537	87.794	87.759	87.823	-0.0028381					6	3	2	0	0	0	0.318	1	23141	23141		7.2892	0	1	45826	+		32476	17683	18842	18843	39822	39822					0.062862813032325
PILVLRGLD	9	Unmodified	_PILVLRGLD_					0	0	0		ENSG00000186765|ENST00000417245|FSCN2;nc|ENSG00000186765|O14926-2|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.31817626953125	2	498.316035	994.617516	0.29331	0.00014616	-0.73224	-0.00036489	-0.43893	-0.00021872	498.3159930448242	60.339	0.874	60.339	59.977	60.851	0					114	31	5	0	0	0	0.11517	1	14816	14816		36.044	1.9418	1	3565400			32477	7639	18843	18844	39823	39823					0.11999210236660929
PILVLRGLD	9	Unmodified	_PILVLRGLD_					0	0	0		ENSG00000186765|ENST00000417245|FSCN2;nc|ENSG00000186765|O14926-2|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.31793212890625	2	498.316035	994.617516	0.33898	0.00016892	-0.90676	-0.00045185	-0.56778	-0.00028293	498.31593426227454	60.326	0.8926	60.314	59.968	60.86	-0.011486					115	32	4	0	0	0	0.1669	1	14803	14803		28.487	1.6032	1	3363100			32478	7639	18843	18844	39824	39824					0.11999210236660929
PILVQRPV	8	Unmodified	_PILVQRPV_					0	0	0			REV__ENST00000479094.5_1_9:96213321-96213438:-|nuORF	REV__ENST00000479094.5_1_9:96213321-96213438:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.2625427246094	2	461.297645	920.580737	0.20777	9.5846E-05	0.36829	0.00016989	0.57606	0.00026573	461.2977854211554	54.296	1.2357	54.359	53.542	54.777	0.063206					72	46	2	0	0	0	0.34092	1	12632	12632		8.5933	3.8373	1	261420	+		32479	21462	18844	18845	39825	39825					0.11726958410747557
PIMCDLDL	8	Unmodified	_PIMCDLDL_					0	0	0		ENST00000425562.6_1_3:197598256-197602578:+|nuORF	ENST00000425562.6_1_3:197598256-197602578:+|nuORF	ENST00000425562.6_1_3:197598256-197602578:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.22564697265625	2	460.216814	918.419076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.477	1	54.54	54.04	55.04	0.063202								0	0	0	0.35014	1	12940	12940		14.582	0	1				32480	10406	18845	18846	39826	39826					-0.043397147288601445
PIMLGKQLEG	10	Unmodified	_PIMLGKQLEG_					0	0	0		DESI1|p.S40Mfs*11|1|0.18|ENSG00000100418|chr22:41607324-41607325|-/CTTCTGGCAT|frameshift_variant;ENSG00000100418|ENST00000263256|DESI1	DESI1|p.S40Mfs*11|1|0.18|ENSG00000100418|chr22:41607324-41607325|-/CTTCTGGCAT|frameshift_variant	DESI1|p.S40Mfs*11|1|0.18|ENSG00000100418|chr22:41607324-41607325|-/CTTCTGGCAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8278198242188	2	543.30481	1084.59507	0.4437	0.00024106	1.3843	0.00075208	1.828	0.00099314	543.3054273445589	33.788	0.49251	33.855	33.607	34.099	0.066704					23	17	2	0	0	0	0.31358	1	6637	6637		13.906	1.3745	1	198830			32481	263	18846	18847	39827	39827					0.05615242776730156
PINLLEALL	9	Unmodified	_PINLLEALL_					0	0	0			REV__ENSG00000197888|ENST00000317746|UGT2B17	REV__ENSG00000197888|ENST00000317746|UGT2B17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7916564941406	2	498.310418	994.606283	0.57124	0.00028465	-0.7753	-0.00038634	-0.20407	-0.00010169	498.30994984141324	82.814	0.61123	82.814	82.589	83.2	0					37	22	2	0	0	0	0.26117	1	21582	21582		2.3027	0	1	396260	+		32482	18777	18847	18848	39828	39828					0.1087638814251477
PINLLEALL	9	Unmodified	_PINLLEALL_					0	0	0			REV__ENSG00000197888|ENST00000317746|UGT2B17	REV__ENSG00000197888|ENST00000317746|UGT2B17	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	498.310418	994.606283	0.48905	0.0002437	-0.75078	-0.00037412	-0.26173	-0.00013042	498.30995478911314	82.754	0.63798	82.827	82.601	83.239	0.073097	-0.0078538	-5.6885E-05	NaN	2.3027	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359180	+		32483	18777	18847	18848							0.1087638814251477
PINQRGMLI	9	Unmodified	_PINQRGMLI_					0	0	0			REV__ENST00000520248.1_1_8:79672597-79674655:-|nuORF	REV__ENST00000520248.1_1_8:79672597-79674655:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.7601318359375	2	521.297319	1040.58008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.045	1	74.097	73.597	74.597	0.052361								0	0	0	0.22789	1	18947	18947		13.508	0.97634	1		+		32484	21881	18848	18849	39829	39829					0.06141795699409158
PINTRIEPY	9	Unmodified	_PINTRIEPY_					0	0	0		ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7841796875	2	551.798206	1101.58186	0.43128	0.00023798	-2.0301	-0.0011202	-1.5989	-0.00088225	552.29837530953	51.874	0.49296	51.925	51.651	52.144	0.050571					21	17	2	0	0	0	0.28128	1	12179	12179		11.64	0	1	198320			32485	2904	18849	18850	39830	39830					0.035131279889810685
PINVIDAMLP	10	Unmodified	_PINVIDAMLP_					0	0	0			REV__ENST00000487227.5_1_1:202302298-202304891:-|nuORF	REV__ENST00000487227.5_1_1:202302298-202304891:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.83203125	2	541.79936	1081.58417	0.48278	0.00026157	-1.0928	-0.00059209	-0.61005	-0.00033053	541.7983769144713	49.655	0.1311	49.675	49.563	49.694	0.020691					6	4	2	0	0	0	0.31629	1	11444	11444		10.074	0	1	70939	+		32486	21561	18850	18851	39831	39831					0.046638404024406555
PINWIWPR	8	Unmodified	_PINWIWPR_					0	0	0			REV__ENST00000545686.6_1_14:90453383-90509484:+|nuORF	REV__ENST00000545686.6_1_14:90453383-90509484:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7919311523438	2	541.300719	1080.58688	0.49125	0.00026591	-3.7916	-0.0020524	-3.3004	-0.0017865	541.2981163323565	71.217	0.31441	71.278	71.148	71.463	0.060783					16	10	2	0	0	0	0.34092	1	18076	18076		2.0598	0	1	173020	+		32487	13530	18851	18852	39832	39832					0.04981476642274174
PIPEGSLV	8	Unmodified	_PIPEGSLV_					0	0	0		ENST00000529571.1_2_11:78282433-78285886:-|nuORF	ENST00000529571.1_2_11:78282433-78285886:-|nuORF	ENST00000529571.1_2_11:78282433-78285886:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.2318420410156	2	406.231636	810.448719	-0.082006	-3.3314E-05	0.76841	0.00031215	0.6864	0.00027884	406.2318560154939	52.326	1.7206	52.326	51.565	53.286	0					128	62	3	0	0	0	0.16192	2	12304	12304;12381		49.669	6.7009	1	940450			32488	11602	18852	18853	39833;39834	39833					0.035913086031428065
PIPEGSLV	8	Unmodified	_PIPEGSLV_					0	0	0		ENST00000529571.1_2_11:78282433-78285886:-|nuORF	ENST00000529571.1_2_11:78282433-78285886:-|nuORF	ENST00000529571.1_2_11:78282433-78285886:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2320251464844	2	406.231636	810.448719	-0.012557	-5.101E-06	0.83675	0.00033991	0.82419	0.00033481	406.2318288596423	52.271	1.541	52.321	51.532	53.073	0.050575					121	55	3	0	0	0	0.16192	1	12319	12319		49.669	6.7009	1	940350			32489	11602	18852	18853	39835	39835					0.035913086031428065
PIPEGSLV	8	Unmodified	_PIPEGSLV_					0	0	0		ENST00000529571.1_2_11:78282433-78285886:-|nuORF	ENST00000529571.1_2_11:78282433-78285886:-|nuORF	ENST00000529571.1_2_11:78282433-78285886:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.2318420410156	2	406.231636	810.448719	-0.20093	-8.1626E-05	0.66336	0.00026948	0.46243	0.00018785	406.2318150071387	52.129	1.6251	52.128	51.631	53.256	-0.00080872					130	59	3	0	0	0	0.16192	3	12305	12305;12331;12436		49.669	6.7009	1	948660			32490	11602	18852	18853	39836;39837;39838	39836					0.035913086031428065
PIPERGPIT	9	Unmodified	_PIPERGPIT_					0	0	0			REV__ENST00000257897.7_2_12:58119581-58120334:-|nuORF	REV__ENST00000257897.7_2_12:58119581-58120334:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.8002624511719	2	490.282192	978.549831	0.78244	0.00038362	0.89272	0.00043768	1.6752	0.0008213	490.28275271952134	47.466	0.28812	47.51	47.349	47.637	0.04332					14	10	2	0	0	0	0.2322	1	10724	10724		14.838	2.3067	1	88514	+		32491	19563	18853	18854	39839	39839					0.05969760305856653
PIPFQVTK	8	Unmodified	_PIPFQVTK_					0	0	0			REV__ENSG00000260456|ENST00000567970|C16orf95	REV__ENSG00000260456|ENST00000567970|C16orf95	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7880859375	2	465.276378	928.538203	0.01008	4.6902E-06	-1.6294	-0.00075811	-1.6193	-0.00075342	465.2762871439672	49.883	0.64307	49.883	49.434	50.077	0					53	23	3	0	0	0	0.37937	1	11569	11569		21.747	1.293	1	448030	+		32492	19278	18854	18855	39840	39840					0.07107563282534102
PIPGQLSTP	9	Unmodified	_PIPGQLSTP_					0	0	0		ENST00000361762.3_2_4:30722797-30723229:+|nuORF	ENST00000361762.3_2_4:30722797-30723229:+|nuORF	ENST00000361762.3_2_4:30722797-30723229:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.61810302734375	2	455.255643	908.496732	0.30269	0.0001378	-0.9433	-0.00042944	-0.64061	-0.00029164	455.2551737254981	87.078	0.50917	87.078	86.857	87.366	0					41	20	3	0	0	0	0.25066	1	22886	22886		11.64	0.81637	1	335320			32493	9698	18855	18856	39841	39841					0.03882382523170236
PIPGQLSTP	9	Unmodified	_PIPGQLSTP_					0	0	0		ENST00000361762.3_2_4:30722797-30723229:+|nuORF	ENST00000361762.3_2_4:30722797-30723229:+|nuORF	ENST00000361762.3_2_4:30722797-30723229:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	455.255643	908.496732	0.23177	0.00010551	-1.2828	-0.00058399	-1.051	-0.00047848	455.2550936948897	86.978	0.54548	87.065	86.824	87.37	0.087097	-0.0063734	-5.0626E-05	NaN	11.64	31	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245480			32494	9698	18855	18856							0.03882382523170236
PIPLCKNRQRI	11	Unmodified	_PIPLCKNRQRI_					0	0	0			REV__ENSG00000179477|ENST00000647874|ALOX12B	REV__ENSG00000179477|ENST00000647874|ALOX12B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.7788391113281	3	446.599329	1336.77616	0.18379	8.2078E-05	0.54451	0.00024318	0.72829	0.00032526	446.59943254534994	49.498	0.76769	49.53	49.209	49.977	0.032043					68	27	3	0	0	0	0.33287	1	11334	11334		2.8433	2.3888	1	414350	+		32495	18079	18856	18857	39842	39842					0.12124180873274781
PIPLSMIF	8	Oxidation (M)	_PIPLSM(Oxidation (M))IF_		PIPLSM(1)IF		PIPLSM(71)IF	0	0	1		ENSG00000104881|ENST00000360957|PPP1R13L;ENST00000585905.1_1_19:45898523-45909561:-|nuORF	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2572021484375	2	467.259339	932.504126	0.16078	7.5125E-05	-1.2869	-0.00060134	-1.1262	-0.00052621	467.2586574252364	79.373	2.4367	79.434	78.286	80.722	0.061417					217	97	4	0	0	0	0.065483	5	20319	20270;20319;20366;20414;20472		70.865	27.897	1	10088000			32496	1929	18857	18858	39843;39844;39845;39846;39847	39844		236			0.03517398799260718
PIPLSMIF	8	Oxidation (M)	_PIPLSM(Oxidation (M))IF_					0	0	1		ENSG00000104881|ENST00000360957|PPP1R13L;ENST00000585905.1_1_19:45898523-45909561:-|nuORF	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	467.259339	932.504126	0.36363	0.00016991	-1.626	-0.00075978	-1.2624	-0.00058987	467.2585233270285	79.461	2.606	79.432	78.123	80.729	-0.028923	-0.00088144	-0.00016652	NaN	70.865	197	100	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10609000			32497	1929	18857	18858				236			0.03517398799260718
PIPQRKTF	8	Unmodified	_PIPQRKTF_					0	0	0		ENST00000596902.1_1_19:44005755-44005845:-|nuORF	ENST00000596902.1_1_19:44005755-44005845:-|nuORF	ENST00000596902.1_1_19:44005755-44005845:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7841491699219	2	493.792727	985.5709	0.53121	0.00026231	0.33257	0.00016422	0.86378	0.00042653	493.7929652698482	57.158	0.61641	57.158	56.908	57.525	0					71	22	4	0	0	0	0.42446	1	13836	13836		14.582	0	1	1396100			32498	12229	18858	18859	39848	39848					0.07753770405383875
PIPQRVVQRG	10	Unmodified	_PIPQRVVQRG_					0	0	0			REV__ENST00000593093.5_1_19:1271113-1271461:+|nuORF	REV__ENST00000593093.5_1_19:1271113-1271461:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8433837890625	2	575.346189	1148.67783	0.3195	0.00018382	-2.6199	-0.0015073	-2.3004	-0.0013235	575.3455547204496	88.48	2.0391	88.477	87.952	89.991	-0.0028381					265	116	4	0	0	0	0.39935	1	23532	23532		3.5965	0.60125	1	1006200	+		32499	22579	18859	18860	39849	39849					0.10943320619730912
PIPRPQNK	8	Unmodified	_PIPRPQNK_					0	0	0		ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.28253173828125	2	475.282526	948.550499	-0.0073637	-3.4999E-06	0.084098	3.997E-05	0.076734	3.647E-05	475.28251293993554	27.314	0.72246	27.314	27.091	27.814	0					45	24	3	0	0	0	0.42758	1	4659	4659		13.508	0	1	317530			32500	377	18860	18861	39850	39850					0.07416599745567964
PIQAQQHLPL	10	Unmodified	_PIQAQQHLPL_					0	0	0		ENST00000591360.1_1_18:56203502-56203619:+|nuORF	ENST00000591360.1_1_18:56203502-56203619:+|nuORF	ENST00000591360.1_1_18:56203502-56203619:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3532104492188	2	572.827298	1143.64004	0.32213	0.00018452	-1.1197	-0.00064142	-0.79762	-0.0004569	572.8266063028645	72.403	0.64951	72.403	72.076	72.726	0					48	23	3	0	0	0	0.318	1	18504	18504		7.2892	0	1	239740			32501	12181	18861	18862	39851	39851					0.07396809634292367
PIQKLFVDKI	10	Unmodified	_PIQKLFVDKI_					0	0	0		ENSG00000154723|ENST00000284971|ATP5PF;ENST00000486002.1_1_21:27097498-27107174:-|nuORF;nc|ENSG00000154723|P18859-2|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	ENSG00000154723|ENST00000284971|ATP5PF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	400.9147644042969	3	400.916541	1199.72779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.05	1	103.04	102.54	103.54	-0.0011139								0	0	0	0.37666	1	27423	27423		3.5871	0.74377	1				32502	5142	18862	18863	39852	39852					0.1359201050502179
PIQRKTLME	9	Unmodified	_PIQRKTLME_					0	0	0			REV__nc|ENSG00000125814|Q9H115-3|NAPB	REV__nc|ENSG00000125814|Q9H115-3|NAPB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3338623046875	2	558.315709	1114.61686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.169	1	27.148	26.648	27.648	-0.021412								0	0	0	0.16039	1	4578	4578		32.305	9.1571	1		+		32503	22978	18863	18864	39853	39853					0.06414047525299793
PIQSHPKL	8	Unmodified	_PIQSHPKL_					0	0	0			REV__nc|ENSG00000005844|P20701-3|ITGAL	REV__nc|ENSG00000005844|P20701-3|ITGAL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7560729980469	2	460.271627	918.528701	0.020451	9.4131E-06	-0.1382	-6.3611E-05	-0.11775	-5.4198E-05	460.27139055451346	32.871	1.0347	32.871	32.582	33.617	0					59	36	2	0	0	0	0.33245	1	6350	6350		8.5933	0	1	271210	+		32504	13347	18864	18865	39854	39854					0.0661779499697559
PIRFVSLLQ	9	Unmodified	_PIRFVSLLQ_					0	0	0			REV__MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|213|3|anti-sense	REV__MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|213|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.251953125	2	536.829309	1071.64407	0.6362	0.00034153	1.1508	0.0006178	1.787	0.00095933	536.8296934362514	65.961	0.5757	66.048	65.754	66.33	0.086952					35	20	2	0	0	0	0.17242	1	16459	16459		22.736	0	1	500680	+		32505	22856	18865	18866	39855	39855					0.11110899127993434
PIRIFETFYRF	11	Unmodified	_PIRIFETFYRF_					0	0	0		ENST00000423759.5_1_X:70607231-70608150:+|nuORF	ENST00000423759.5_1_X:70607231-70608150:+|nuORF	ENST00000423759.5_1_X:70607231-70608150:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3130798339844	3	496.938117	1487.79252	0.36325	0.00018051	-2.0706	-0.001029	-1.7074	-0.00084846	497.272433490197	49.551	0.69246	49.595	49.184	49.877	0.044888					41	25	3	0	0	0	0.33202	1	11423	11423		5.0475	2.4163	1	459510			32506	10389	18866	18867	39856	39856					0.06813585311010684
PIRKIQNNN	9	Unmodified	_PIRKIQNNN_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7875366210938	2	548.814722	1095.61489	0.5109	0.00028039	-1.8867	-0.0010354	-1.3758	-0.00075504	549.3152150859054	72.559	0.15691	72.559	72.456	72.613	0					6	5	2	0	0	0	0.2451	1	18477	18477		10.824	2.2306	1	70311	+		32507	15461	18867	18868	39857	39857					0.0709075483171091
PIRKKAML	8	Unmodified	_PIRKKAML_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;ENST00000544576.1_1_8:145297127-145303835:+|nuORF	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.805419921875	2	478.807322	955.600092	-0.99046	-0.00047424	-1.8636	-0.00089232	-2.8541	-0.0013666	478.8064179887064	34.796	1.2412	34.871	34.212	35.454	0.075306					72	44	2	0	0	0	0.45851	1	6892	6892		2.8892	0	1	221670			32508	7145	18868	18869	39858	39858					0.12051591429997188
PIRLVLVV	8	Unmodified	_PIRLVLVV_					0	0	0			REV__ENST00000484563.1_1_1:109968976-109969045:-|nuORF	REV__ENST00000484563.1_1_1:109968976-109969045:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.9046630859375	2	454.818213	907.621873	-0.18366	-8.3532E-05	0.34793	0.00015825	0.16427	7.4715E-05	454.8183018542887	61.809	0.48486	61.8	61.582	62.067	-0.0085526					29	16	2	0	0	0	0.34092	1	15276	15276		13.508	0	1	298050	+		32509	21534	18869	18870	39859	39859					0.16436719450234705
PIRNAFWRGF	10	Unmodified	_PIRNAFWRGF_					0	0	0		ENST00000538010.5_1_12:122497414-122497657:+|nuORF	ENST00000538010.5_1_12:122497414-122497657:+|nuORF	ENST00000538010.5_1_12:122497414-122497657:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5927429199219	3	421.896363	1262.66726	0.13553	5.7178E-05	0.77219	0.00032578	0.90771	0.00038296	421.89680878961195	43.415	0.35711	43.499	43.327	43.684	0.083996					18	12	2	0	0	0	0.318	1	9577	9577		1.9064	0	1	83778			32510	11696	18870	18871	39860	39860					0.04643337965308092
PIRRRQHRL	9	Unmodified	_PIRRRQHRL_					0	0	0			REV__ENST00000270502.6_1_19:11039810-11040236:+|nuORF	REV__ENST00000270502.6_1_19:11039810-11040236:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.90435791015625	3	411.258406	1230.75339	-0.35388	-0.00014554	0.35291	0.00014514	-0.00096962	-3.9877E-07	411.2584927016952	14.493	0.67041	14.493	14.279	14.949	0					58	23	3	0	0	0	0.26274	1	847	847		0.26902	0	1	247180	+		32511	19673	18871	18872	39861	39861					0.14724342590693595
PIRRRQHRL	9	Unmodified	_PIRRRQHRL_					0	0	0			REV__ENST00000270502.6_1_19:11039810-11040236:+|nuORF	REV__ENST00000270502.6_1_19:11039810-11040236:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.9044189453125	3	411.258406	1230.75339	-0.10619	-4.367E-05	-0.11142	-4.5823E-05	-0.21761	-8.9493E-05	411.2583507391486	14.669	0.59744	14.565	14.338	14.935	-0.10466					60	20	4	0	0	0	0.26274	1	891	891		0.26902	0	1	249840	+		32512	19673	18871	18872	39862	39862					0.14724342590693595
PIRRRQHRL	9	Unmodified	_PIRRRQHRL_					0	0	0			REV__ENST00000270502.6_1_19:11039810-11040236:+|nuORF	REV__ENST00000270502.6_1_19:11039810-11040236:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.9043884277344	3	411.258406	1230.75339	-0.17836	-7.3351E-05	0.0093471	3.8441E-06	-0.16901	-6.9507E-05	411.25839061515387	14.706	0.61283	14.64	14.427	15.039	-0.066068					58	21	4	0	0	0	0.26238	1	896	896		1.0715	0	1	186980	+		32513	19673	18871	18872	39863	39863					0.14724342590693595
PIRRTAKQK	9	Unmodified	_PIRRTAKQK_					0	0	0			REV__ENSG00000156050|ENST00000286544|FAM161B	REV__ENSG00000156050|ENST00000286544|FAM161B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3191528320312	2	549.348732	1096.68291	0.049871	2.7397E-05	-0.41455	-0.00022773	-0.36468	-0.00020034	549.3483714459842	12.3	0.17785	12.3	12.219	12.397	0					9	5	2	0	0	0	0.26251	1	93	93		0.6015	0	1	15931	+		32514	16728	18872	18873	39864	39864					0.1384362448234242
PIRTLTPVL	9	Unmodified	_PIRTLTPVL_					0	0	0		ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.763671875	2	505.32386	1008.63317	0.34291	0.00017328	0.35151	0.00017763	0.69442	0.00035091	505.3239747920873	66.487	0.47179	66.571	66.354	66.826	0.083832					19	16	2	0	0	0	0.19839	1	16628	16628		21.747	0.20967	1	72215			32515	7649	18873	18874	39865	39865					0.12919496753693238
PIRYANDL	8	Unmodified	_PIRYANDL_					0	0	0		ENST00000558280.1_3_14:24553872-24583941:-|nuORF	ENST00000558280.1_3_14:24553872-24583941:-|nuORF	ENST00000558280.1_3_14:24553872-24583941:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2896728515625	2	481.258717	960.50288	0.50872	0.00024483	0.35086	0.00016886	0.85958	0.00041368	481.2591033889421	50.995	0.43044	50.995	50.792	51.222	0					26	15	3	0	0	0	0.33245	1	11936	11936		8.5933	0	1	217810			32516	11873	18874	18875	39866	39866					0.021049007546935172
PIRYPRPG	8	Unmodified	_PIRYPRPG_					0	0	0		ENST00000302174.8_1_4:88343951-88356162:+|nuORF	ENST00000302174.8_1_4:88343951-88356162:+|nuORF	ENST00000302174.8_1_4:88343951-88356162:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.9214172363281	2	478.277244	954.539935	-0.72588	-0.00034717	-1.5656	-0.00074879	-2.2915	-0.001096	478.2763923134267	34.827	0.38559	34.904	34.755	35.141	0.077377					22	13	2	0	0	0	0.34319	1	6960	6960		5.7604	0	1	169330			32517	9230	18875	18876	39867	39867					0.060846170911418085
PIRYYVRWRLG	11	Unmodified	_PIRYYVRWRLG_					0	0	0		ENSG00000127954|ENST00000380079|STEAP4	ENSG00000127954|ENST00000380079|STEAP4	ENSG00000127954|ENST00000380079|STEAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.787353515625	3	493.617489	1477.83064	0.40609	0.00020045	-0.68193	-0.00033661	-0.27584	-0.00013616	493.6171282989391	49.827	0.80664	49.827	49.434	50.241	0					45	29	2	0	0	0	0.33326	1	11414	11414		0.50596	0.50596	1	266250			32518	3342	18876	18877	39868	39868					0.11083516016356043
PISAFVPTV	9	Unmodified	_PISAFVPTV_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.77734375	2	465.768386	929.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.318	1	74.318	73.818	74.818	0								0	0	0	0.13597	1	19038	19038		37.974	0	1		+		32519	15461	18877	18878	39869	39869					0.05463857045617715
PISAFVPTV	9	Unmodified	_PISAFVPTV_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7775573730469	2	465.768386	929.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.517	1	74.517	74.017	75.017	0								0	0	0	0.16039	1	19099	19099		32.305	0	1		+		32520	15461	18877	18878	39870	39870					0.05463857045617715
PISAFVPTV	9	Unmodified	_PISAFVPTV_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7778015136719	2	465.768386	929.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.25	1	74.302	73.802	74.802	0.052361								0	0	0	0.13597	1	19010	19010		37.974	0	1		+		32521	15461	18877	18878	39871	39871					0.05463857045617715
PISHSATSPP	10	Unmodified	_PISHSATSPP_					0	0	0		SALL1|p.G1140Wfs*35|1|0.22|ENSG00000103449|chr16:51138804-51138805|-/A|frameshift_variant;ENSG00000103449|ENST00000251020|SALL1;nc|ENSG00000103449|Q9NSC2-2|SALL1	SALL1|p.G1140Wfs*35|1|0.22|ENSG00000103449|chr16:51138804-51138805|-/A|frameshift_variant	SALL1|p.G1140Wfs*35|1|0.22|ENSG00000103449|chr16:51138804-51138805|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.774658203125	2	497.253631	992.49271	0.59906	0.00029788	-0.7369	-0.00036643	-0.13784	-6.8543E-05	497.25389419309863	29.351	0.43975	29.351	29.193	29.633	0					32	15	3	0	0	0	0.28434	1	5325	5325		25.399	10.561	1	109670			32522	1835	18878	18879	39872	39872					-0.003837069705241447
PISIRLLD	8	Unmodified	_PISIRLLD_					0	0	0			REV__nc|ENSG00000197658|Q8N4F4-3|SLC22A24	REV__nc|ENSG00000197658|Q8N4F4-3|SLC22A24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.801025390625	2	463.78711	925.559667	0.16412	7.6119E-05	-0.195	-9.044E-05	-0.030879	-1.4321E-05	463.78785843392956	40.414	1.0449	40.414	40.024	41.069	0					69	37	4	0	0	0	0.44389	1	8778	8778		7.9102	0	1	313030	+		32523	18756	18879	18880	39873	39873					0.09390948311227021
PISSGTDSVLQ	11	Unmodified	_PISSGTDSVLQ_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8347778320312	2	552.282586	1102.55062	0.21158	0.00011685	-3.7418	-0.0020665	-3.5302	-0.0019497	552.7819010997165	25.656	0.091311	25.656	25.591	25.683	0					4	2	2	0	0	0	0.33149	1	4107	4107		5.2969	0.39987	1	27656			32524	2170	18880	18881	39874	39874					0.0034451016424554837
PISSLINL	8	Unmodified	_PISSLINL_					0	0	0			REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.7603759765625	2	428.760561	855.506569	0.10686	4.5817E-05	-0.52467	-0.00022496	-0.41781	-0.00017914	428.7603839501899	86.648	0.97015	86.648	86.2	87.17	0					95	38	4	0	0	0	0.25627	1	22796	22796		30.225	7.0764	1	736710	+		32525	17525	18881	18882	39875	39875					0.07303570528563341
PISSLINL	8	Unmodified	_PISSLINL_					0	0	0			REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.7603759765625	2	428.760561	855.506569	0.10121	4.3395E-05	-0.5626	-0.00024122	-0.46139	-0.00019783	428.7603635777601	86.597	0.95857	86.588	86.234	87.192	-0.0090027					74	37	3	0	0	0	0.3671	1	22815	22815		23.148	2.6948	1	614350	+		32526	17525	18881	18882	39876	39876					0.07303570528563341
PISSLINL	8	Unmodified	_PISSLINL_					0	0	0			REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	428.760561	855.506569	0.0029349	1.2584E-06	-0.40352	-0.00017301	-0.40058	-0.00017175	428.7604067208281	86.536	0.69959	86.62	86.258	86.958	0.084251	0.0012562	5.3113E-05	NaN	30.225	85	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	636960	+		32527	17525	18881	18882							0.07303570528563341
PISSLINL	8	Unmodified	_PISSLINL_					0	0	0			REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	428.760561	855.506569	0.10121	4.3395E-05	-0.5626	-0.00024122	-0.46139	-0.00019783	428.7603635777601	86.597	0.95857	86.588	86.234	87.192	-0.0090027	-0.030661	-8.3303E-05	NaN	30.225	74	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614350	+		32528	17525	18881	18882							0.07303570528563341
PISTHRLHF	9	Unmodified	_PISTHRLHF_					0	0	0		ENST00000496116.1_1_3:99536823-99742189:+|nuORF	ENST00000496116.1_1_3:99536823-99742189:+|nuORF	ENST00000496116.1_1_3:99536823-99742189:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2986450195312	2	554.306532	1106.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.746	1	96.741	96.241	97.241	-0.0055466								0	0	0	0.2489	1	25881	25881		6.7232	0	1				32529	11226	18882	18883	39877	39877					0.04947673665606089
PITFTPVQF	9	Unmodified	_PITFTPVQF_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3053588867188	2	525.286943	1048.55933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.096	1	86.181	85.681	86.681	0.084251								0	0	0	0.24311	1	22637	22637		8.5933	0.68312	1		+		32530	13950	18883	18884	39878	39878					0.03699528591369017
PITGFRLD	8	Unmodified	_PITGFRLD_					0	0	0			REV__ENSG00000204518|ENST00000376221|AADACL4	REV__ENSG00000204518|ENST00000376221|AADACL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.75616455078125	2	459.75581	917.497067	0.06595	3.0321E-05	0.23745	0.00010917	0.3034	0.00013949	459.7558222823666	53.437	0.76017	53.494	53.193	53.953	0.056259					57	28	3	0	0	0	0.41758	1	12744	12744		16.942	1.1741	1	970960	+		32531	18949	18884	18885	39879	39879					0.03501802243022212
PITIFGCKLL	10	Unmodified	_PITIFGCKLL_					0	0	0			REV__ENST00000473720.5_1_2:130913606-130922014:-|nuORF	REV__ENST00000473720.5_1_2:130913606-130922014:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2979736328125	2	552.827921	1103.64129	0.72021	0.00039815	3.8536	0.0021304	4.5738	0.0025285	553.330952003536	50.121	0.082134	50.141	50.095	50.177	0.020691					4	2	2	0	0	0	0.31482	1	11584	11584		11.64	3.047	1	127090	+		32532	21383	18885	18886	39880	39880					0.09361307678818775
PITKQKRKSR	10	Unmodified	_PITKQKRKSR_					0	0	0			REV__ENST00000416382.6_1_10:11373873-11374074:+|nuORF	REV__ENST00000416382.6_1_10:11373873-11374074:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.59765625	3	414.598206	1240.77279	0.18064	7.4895E-05	-0.88828	-0.00036828	-0.70764	-0.00029338	414.59756618039125	95.705	1.2987	95.782	95.308	96.606	0.077408					296	119	4	0	0	0	0.38773	1	25569	25569		3.0723	0	1	1469900	+		32533	20817	18886	18887	39881	39881					0.16203254090919472
PITKQKRKSR	10	Unmodified	_PITKQKRKSR_					0	0	0			REV__ENST00000416382.6_1_10:11373873-11374074:+|nuORF	REV__ENST00000416382.6_1_10:11373873-11374074:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.5975646972656	3	414.598206	1240.77279	0.29452	0.00012211	-0.82692	-0.00034284	-0.53241	-0.00022073	414.59754110781347	95.765	2.2052	95.761	94.49	96.695	-0.0038223					369	209	3	0	0	0	0.38773	1	25549	25549		3.0723	0	1	1304900	+		32534	20817	18886	18887	39882	39882					0.16203254090919472
PITKQKRKSR	10	Unmodified	_PITKQKRKSR_					0	0	0			REV__ENST00000416382.6_1_10:11373873-11374074:+|nuORF	REV__ENST00000416382.6_1_10:11373873-11374074:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	414.598206	1240.77279	-0.26144	-0.00010839	-0.34416	-0.00014269	-0.60561	-0.00025108	414.59773700444134	95.796	1.0703	95.796	95.327	96.397	0	0.016074	0.00044096	NaN	3.0723	292	107	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	545180	+		32535	20817	18886	18887							0.16203254090919472
PITKQKRKSR	10	Unmodified	_PITKQKRKSR_					0	0	0			REV__ENST00000416382.6_1_10:11373873-11374074:+|nuORF	REV__ENST00000416382.6_1_10:11373873-11374074:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	414.598206	1240.77279	0.29452	0.00012211	-0.82692	-0.00034284	-0.53241	-0.00022073	414.59754110781347	95.765	2.2052	95.761	94.49	96.695	-0.0038223	-0.018802	-0.0001595	NaN	3.0723	369	209	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1304900	+		32536	20817	18886	18887							0.16203254090919472
PITLLAAVAR	10	Unmodified	_PITLLAAVAR_					0	0	0			REV__ENSG00000111530|ENST00000545606|CAND1	REV__ENSG00000111530|ENST00000545606|CAND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.257568359375	2	512.829309	1023.64407	-0.032514	-1.6674E-05	-0.31808	-0.00016312	-0.35059	-0.00017979	512.8290227041743	39.327	0.4562	39.327	39.164	39.62	0					20	16	2	0	0	0	0.31267	1	8361	8361		14.838	3.198	1	139000	+		32537	14723	18887	18888	39883	39883					0.13318899127978057
PITLLAAVAR	10	Unmodified	_PITLLAAVAR_					0	0	0			REV__ENSG00000111530|ENST00000545606|CAND1	REV__ENSG00000111530|ENST00000545606|CAND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2576904296875	2	512.829309	1023.64407	0.064983	3.3325E-05	-0.92635	-0.00047506	-0.86137	-0.00044174	512.8288578160236	39.188	0.44553	39.281	39.052	39.497	0.09267					22	15	2	0	0	0	0.31267	1	8288	8288		14.838	0	1	150170	+		32538	14723	18887	18888	39884	39884					0.13318899127978057
PITNFLGVKL	10	Unmodified	_PITNFLGVKL_					0	0	0		ENST00000608609.1_1_2:97477994-97479367:-|nuORF	ENST00000608609.1_1_2:97477994-97479367:-|nuORF	ENST00000608609.1_1_2:97477994-97479367:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.8146362304688	2	551.336967	1100.65938	0.51731	0.00028521	-0.33671	-0.00018564	0.1806	9.9571E-05	551.3367185768383	40.67	0.54253	40.67	40.388	40.93	0					43	19	3	0	0	0	0.3156	1	8733	8733		3.5965	1.5367	1	401680			32539	12317	18888	18889	39885	39885					0.11307765925175772
PITQRYFNLL	10	Unmodified	_PITQRYFNLL_					0	0	0		nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2406005859375	3	422.239796	1263.69756	0.027979	1.1814E-05	1.0015	0.00042288	1.0295	0.00043469	422.24049907255613	26.19	1.0261	26.167	25.867	26.893	-0.022236					110	36	4	0	0	0	0.33753	1	4287	4287		14.957	0	1	948970			32540	869	18889	18890	39886	39886					0.07625651839862257
PITVNPAL	8	Unmodified	_PITVNPAL_					0	0	0		nc|ENSG00000168916|Q9ULD9-2|ZNF608;ENSG00000168916|ENST00000513986|ZNF608	nc|ENSG00000168916|Q9ULD9-2|ZNF608	nc|ENSG00000168916|Q9ULD9-2|ZNF608	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2677917480469	2	412.747453	823.480354	0.23129	9.5464E-05	0.38733	0.00015987	0.61861	0.00025533	412.7471628308542	71.599	0.13755	71.655	71.568	71.706	0.056572					6	4	2	0	0	0	0.34367	1	18176	18176		4.3292	0	1	60481			32541	6311	18890	18891	39887	39887					0.06155301357091503
PIVPYSSMF	9	Unmodified	_PIVPYSSMF_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3472900390625	2	520.759704	1039.50485	0.49722	0.00025893	-2.854	-0.0014863	-2.3568	-0.0012273	520.7594522072749	71.964	0.13451	71.964	71.855	71.989	0					6	4	2	0	0	0	0.24542	1	18294	18294		14.582	8.2276	1	54592			32542	12750	18891	18892	39888	39888					-0.013318065517069044
PIVSIPQI	8	Unmodified	_PIVSIPQI_					0	0	0			REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.7707824707031	2	433.770929	865.527304	0.097341	4.2224E-05	0.82995	0.00036001	0.92729	0.00040223	433.7707610770449	74.407	1.8526	74.407	73.998	75.85	0					87	64	2	0	0	0	0.072895	2	19088	19037;19088		67.344	0	1	1036400	+		32543	16791	18892	18893	39889;39890	39890					0.08916160908222537
PIVSIPQI	8	Unmodified	_PIVSIPQI_					0	0	0			REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.7708435058594	2	433.770929	865.527304	-0.053876	-2.337E-05	0.89642	0.00038884	0.84254	0.00036547	433.77083925688726	74.405	1.9652	74.457	73.95	75.915	0.052361					93	70	2	0	0	0	0.11736	1	19065	19065		57.471	0	1	1103000	+		32544	16791	18892	18893	39891	39891					0.08916160908222537
PIVSIPQI	8	Unmodified	_PIVSIPQI_					0	0	0			REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.7709655761719	2	433.770929	865.527304	0.059408	2.5769E-05	0.86335	0.0003745	0.92276	0.00040027	433.770833279221	74.487	1.8932	74.457	73.91	75.804	-0.030663					92	68	2	0	0	0	0.095164	2	19044	19044;19087		61.357	0	1	1143900	+		32545	16791	18892	18893	39892;39893	39892					0.08916160908222537
PIVSIPQI	8	Unmodified	_PIVSIPQI_					0	0	0			REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	433.770929	865.527304	0.097341	4.2224E-05	0.82995	0.00036001	0.92729	0.00040223	433.7707610770449	74.407	1.8526	74.407	73.998	75.85	0	-0.033357	-3.1099E-05	NaN	67.344	87	64	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1036400	+		32546	16791	18892	18893							0.08916160908222537
PIVSIPQI	8	Unmodified	_PIVSIPQI_					0	0	0			REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	REV__nc|ENSG00000157625|Q8N5C8-2|TAB3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	433.770929	865.527304	0.059408	2.5769E-05	0.86335	0.0003745	0.92276	0.00040027	433.770833279221	74.487	1.8932	74.457	73.91	75.804	-0.030663	0.016411	-2.1234E-06	NaN	67.344	92	68	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1143900	+		32547	16791	18892	18893							0.08916160908222537
PIVSPRGPLS	10	Unmodified	_PIVSPRGPLS_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2694396972656	2	511.803291	1021.59203	0.38682	0.00019798	-0.57177	-0.00029263	-0.18495	-9.4656E-05	511.80283037979086	44.928	1.0017	44.997	44.627	45.628	0.068569					51	35	2	0	0	0	0.31358	1	10049	10049		13.906	13.906	1	361800	+		32548	13593	18893	18894	39894	39894					0.08209735714228827
PIVSPRGPLS	10	Unmodified	_PIVSPRGPLS_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.26947021484375	2	511.803291	1021.59203	0.37716	0.00019303	-0.31234	-0.00015986	0.064822	3.3176E-05	511.80311792696193	44.963	1.0178	45.038	44.615	45.633	0.075047					65	37	2	0	0	0	0.31358	1	10091	10091		9.3831	0	1	328130	+		32549	13593	18893	18894	39895	39895					0.08209735714228827
PIVYWEYQ	8	Unmodified	_PIVYWEYQ_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1;ENST00000478333.1_1_6:137528098-137540521:-|nuORF;nc|ENSG00000027697|P15260-2|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3013305664062	2	549.26875	1096.52295	-0.13278	-7.2934E-05	-3.1419	-0.0017257	-3.2746	-0.0017987	549.2667145123418	34.531	0.72411	34.608	34.308	35.033	0.077381					33	25	2	0	0	0	0.34185	1	6740	6740		10.183	3.4602	1	281670			32550	542	18894	18895	39896	39896					-0.02145348305339212
PIWARTRGILT	11	Unmodified	_PIWARTRGILT_					0	0	0		ENST00000263857.10_1_2:86276059-86276122:-|nuORF	ENST00000263857.10_1_2:86276059-86276122:-|nuORF	ENST00000263857.10_1_2:86276059-86276122:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8811645507812	2	642.382771	1282.75099	0.49132	0.00031562	2.0256	0.0013012	2.5169	0.0016168	642.384078356852	96.847	0.099289	96.842	96.788	96.887	-0.0055466					13	9	2	0	0	0	0.33318	1	25919	25919		1.3295	0	1	72200			32551	9017	18895	18896	39897	39897					0.12092449342389955
PIWFFVCF	8	Unmodified	_PIWFFVCF_					0	0	0			REV__ENSG00000168216|ENST00000649934|LMBRD1	REV__ENSG00000168216|ENST00000649934|LMBRD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3547973632812	2	529.762049	1057.50955	0.91339	0.00048388	-0.46906	-0.00024849	0.44433	0.00023539	529.7624986827933	77.556	0.65387	77.525	77.186	77.84	-0.031334					40	23	2	0	0	0	0.31651	1	20064	20064		24.21	2.4633	1	256590	+		32552	17446	18896	18897	39898	39898					-0.016908776182617657
PIYAAPSNLK	10	Unmodified	_PIYAAPSNLK_					0	0	0		ENSG00000100842|ENST00000216733|EFS;nc|ENSG00000100842|O43281-2|EFS	ENSG00000100842|ENST00000216733|EFS	ENSG00000100842|ENST00000216733|EFS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.795166015625	2	537.303124	1072.5917	0.4074	0.0002189	0.51447	0.00027643	0.92187	0.00049532	537.3034529524688	57.517	0.46133	57.603	57.404	57.865	0.085617					26	16	2	0	0	0	0.30958	1	13938	13938		19.257	2.1441	1	409520			32553	1636	18897	18898	39899	39899					0.05830315994353441
PIYGLRQSI	9	Unmodified	_PIYGLRQSI_					0	0	0		ENSG00000100249|ENST00000216071|C22orf31	ENSG00000100249|ENST00000216071|C22orf31	ENSG00000100249|ENST00000216071|C22orf31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.8031005859375	2	523.803291	1045.59203	0.46872	0.00024552	-0.50361	-0.00026379	-0.034885	-1.8273E-05	523.802983048992	59.791	0.88044	59.779	59.343	60.223	-0.011486					43	30	2	0	0	0	0.18803	1	14634	14634		25.399	0	1	907820			32554	1553	18898	18899	39900	39900					0.07105735714230832
PIYLKQSI	8	Unmodified	_PIYLKQSI_					0	0	0			REV__ENSG00000162782|ENST00000444136|TDRD5	REV__ENSG00000162782|ENST00000444136|TDRD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.29681396484375	2	481.289485	960.564418	0.38483	0.00018521	2.6409	0.001271	3.0257	0.0014562	481.2894623183119	51.191	1.019	51.191	50.922	51.941	0					79	37	4	0	0	0	0.27124	1	11913	11913		34.102	1.6488	1	1605900	+		32555	17011	18899	18900	39901	39901					0.08255832453994572
PKAKEHKAK	9	Unmodified	_PKAKEHKAK_					0	0	0		ENSG00000183644|ENST00000375618|HOATZ;nc|ENSG00000183644|Q6PI97-3|HOATZ	ENSG00000183644|ENST00000375618|HOATZ	ENSG00000183644|ENST00000375618|HOATZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.278564453125	2	518.816733	1035.61891	0.30238	0.00015688	-0.41248	-0.000214	-0.11009	-5.7118E-05	518.8166654811795	26.674	0.45608	26.674	26.469	26.925	0					34	15	3	0	0	0	0.22061	1	4397	4397		24.021	13.947	1	205210			32556	7384	18900	18901	39902	39902					0.10252844325418664
PKARRRRW	8	Unmodified	_PKARRRRW_					0	0	0			REV__ENSG00000108947|ENST00000226091|EFNB3	REV__ENSG00000108947|ENST00000226091|EFNB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.6444702148438	2	563.346858	1124.67916	-0.049866	-2.8092E-05	-0.62217	-0.0003505	-0.67204	-0.00037859	563.3462506107123	14.813	0.27988	14.748	14.618	14.898	-0.064413					16	9	2	0	0	0	0.344	1	805	805		2.5775	0	1	43407	+		32557	14617	18901	18902	39903	39903					0.12180999499150857
PKATFPFFT	9	Unmodified	_PKATFPFFT_					0	0	0			REV__ENST00000531357.1_1_11:64888296-64888581:-|nuORF	REV__ENST00000531357.1_1_11:64888296-64888581:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2803344726562	2	528.28166	1054.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.74	1	119.77	119.27	120.27	0.027756								0	0	0	0.25631	1	30957	30957		4.3292	0	1		+		32558	22020	18902	18903	39904	39904					0.023675459369314922
PKCTFHGPPLI	11	Unmodified	_PKCTFHGPPLI_					0	0	0			REV__ENSG00000213171|ENST00000368820|LINGO4	REV__ENSG00000213171|ENST00000368820|LINGO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.8645324707031	3	403.886476	1208.6376	-0.42902	-0.00017328	0.20453	8.2609E-05	-0.22449	-9.0667E-05	404.22050781003884	13.296	0.17357	13.296	13.254	13.427	0					8	5	2	0	0	0	0.3333	1	415	415		1.3296	0.55311	1	9578.3	+		32559	19034	18903	18904	39905	39905					0.0416263790496032
PKDEEQHRP	9	Unmodified	_PKDEEQHRP_					0	0	0			REV__ENSG00000268738|ENST00000598963|HSFX2	REV__ENSG00000268738|ENST00000598963|HSFX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8070068359375	2	568.278169	1134.54179	0.042166	2.3962E-05	2.8027	0.0015927	2.8448	0.0016167	568.279699232857	13.056	0.14764	12.957	12.894	13.042	-0.099291					7	4	2	0	0	0	0.26168	1	330	330		1.8442	0.36234	1	13422	+		32560	17621	18904	18905	39906	39906					-0.020104186815842695
PKDKERAETNL	11	Unmodified	_PKDKERAETNL_					0	0	0			REV__nc|ENSG00000158321|Q8WXX7-5|AUTS2	REV__nc|ENSG00000158321|Q8WXX7-5|AUTS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8822937011719	3	434.233369	1299.67828	-0.12355	-5.3651E-05	-0.9012	-0.00039133	-1.0247	-0.00044498	434.56800841841454	17.569	0.11621	17.509	17.444	17.56	-0.060429					5	3	2	0	0	0	0.33326	1	1665	1665		1.4551	0.49284	1	14271	+		32561	16808	18905	18906	39907	39907					0.04042650758287891
PKDKGKITKR	10	Unmodified	_PKDKGKITKR_					0	0	0		nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.374755859375	2	585.869497	1169.72444	0.078781	4.6156E-05	-0.33247	-0.00019478	-0.25368	-0.00014863	585.8695632746957	25.204	0.3631	25.149	24.918	25.281	-0.055931					18	12	2	0	0	0	0.32054	1	4017	4017		3.2813	0	1	100040			32562	5761	18906	18907	39908	39908					0.1463676045102602
PKDKGKITKR	10	Unmodified	_PKDKGKITKR_					0	0	0		nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.3745727539062	2	585.869497	1169.72444	-0.078019	-4.5709E-05	0.088736	5.1988E-05	0.010717	6.2786E-06	585.869573225003	25.117	0.45674	25.085	24.89	25.347	-0.03141					28	15	3	0	0	0	0.32054	1	4026	4026		3.2813	1.6287	1	102280			32563	5761	18906	18907	39909	39909					0.1463676045102602
PKDKWSHC	8	Unmodified	_PKDKWSHC_					0	0	0			REV__nc|ENSG00000244682|P31995-4|FCGR2C	REV__nc|ENSG00000244682|P31995-4|FCGR2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.6715393066406	2	500.737094	999.459635	0.1953	9.7796E-05	0.71215	0.0003566	0.90745	0.00045439	500.73747671675176	16.147	0.58597	16.147	15.791	16.377	0					37	20	2	0	0	0	0.34353	1	1190	1190		4.756	0.42677	1	30113	+		32564	23213	18907	18908	39910	39910					-0.04011612294232236
PKDLIDKEKSL	11	Unmodified	_PKDLIDKEKSL_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	643.3724975585938	2	643.371735	1284.72892	0.85504	0.00055011	0.43782	0.00028168	1.2929	0.00083179	643.3719616239974	50.158	0.96727	50.203	49.825	50.792	0.044891					104	35	5	0	0	0	0.13269	4	11550	11550;11596;11691;11701		45.74	45.74	1	6192200	+		32565	15022	18908	18909	39911;39912;39913;39914	39911					0.0979418008328139
PKDLIDKEKSL	11	Unmodified	_PKDLIDKEKSL_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	643.37255859375	2	643.371735	1284.72892	0.8802	0.00056629	0.40274	0.00025911	1.2829	0.0008254	643.371948656467	50.129	1.1745	50.15	49.802	50.976	0.020695					107	43	4	0	0	0	0.060763	4	11649	11554;11599;11649;11703		53.404	53.404	1	6118000	+		32566	15022	18908	18909	39915;39916;39917;39918	39917					0.0979418008328139
PKDMVIIV	8	Unmodified	_PKDMVIIV_					0	0	0		ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2;nc|ENSG00000007402|Q9NY47-4|CACNA2D2	ENSG00000007402|ENST00000424201|CACNA2D2	ENSG00000007402|ENST00000424201|CACNA2D2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.77093505859375	2	457.772614	913.530675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.204	1	85.284	84.784	85.784	0.080887								0	0	0	0.33432	1	22363	22363		21.747	0.87544	1				32567	381	18909	18910	39919	39919					0.07045087690596574
PKDRFSAPL	9	Unmodified	_PKDRFSAPL_					0	0	0			REV__ENST00000482556.5_1_20:47242047-47242404:-|nuORF	REV__ENST00000482556.5_1_20:47242047-47242404:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.8368530273438	2	515.787641	1029.56073	0.30529	0.00015747	0.075883	3.9139E-05	0.38117	0.00019661	515.7877262594304	49.804	0.73487	49.849	49.425	50.16	0.044891					49	27	2	0	0	0	0.24993	1	11398	11398		13.042	0	1	539020	+		32568	21502	18910	18911	39920	39920					0.04713162680127425
PKDVYSKQRN	10	Unmodified	_PKDVYSKQRN_					0	0	0		nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.89813232421875	3	412.222805	1233.64658	-0.16927	-6.9777E-05	2.0602	0.00084925	1.8909	0.00077947	412.2239578285822	13.857	0.30339	13.752	13.658	13.961	-0.10466					15	10	3	0	0	0	0.31889	1	556	556		5.7834	0.38072	1	23910			32569	5646	18911	18912	39921	39921					0.03910702794996723
PKEFSVYVQ	9	Unmodified	_PKEFSVYVQ_					0	0	0		nc|ENSG00000164744|Q8TAQ9-2|SUN3	nc|ENSG00000164744|Q8TAQ9-2|SUN3	nc|ENSG00000164744|Q8TAQ9-2|SUN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.799560546875	2	548.787307	1095.56006	0.12064	6.6208E-05	0.052911	2.9037E-05	0.17356	9.5245E-05	548.7874387567562	15.011	0.56313	15.011	14.819	15.382	0					41	19	3	0	0	0	0.33018	1	897	897		4.3292	0.38484	1	263910			32570	12808	18912	18913	39922	39922					0.016103232404248047
PKEHGHFF	8	Unmodified	_PKEHGHFF_					0	0	0			REV__ENSG00000176769|ENST00000368642|TCERG1L	REV__ENSG00000176769|ENST00000368642|TCERG1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.8040466308594	2	499.745776	997.477	0.092702	4.6328E-05	0.85503	0.0004273	0.94773	0.00047363	499.74572059898964	12.22	0.12423	12.123	12.053	12.178	-0.096607					8	4	2	0	0	0	0.344	1	64	64		2.5775	0	1	11989	+		32571	17947	18913	18914	39923	39923					-0.02183948696904281
PKEKMDNLRA	10	Unmodified	_PKEKMDNLRA_					0	0	0			REV__ENST00000437982.1_1_2:130970445-130970847:-|nuORF	REV__ENST00000437982.1_1_2:130970445-130970847:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.3035278320312	2	601.321522	1200.62849	0.74653	0.00044891	0.27779	0.00016704	1.0243	0.00061595	601.3212532427372	83.982	0.96165	83.982	83.148	84.109	0					60	37	2	0	0	0	0.37133	1	21971	21971		8.7454	0.83525	1	225890	+		32572	15058	18914	18915	39924	39924					0.03620244548642404
PKEKNEAI	8	Unmodified	_PKEKNEAI_					0	0	0		HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;nc|ENSG00000147874|Q7Z4H7-2|HAUS6;HAUS6|p.P532Hfs*10|1|0.04|ENSG00000147874|chr9:19063042-19063042|G/-|frameshift_variant	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.16094970703125	2	464.758549	927.502546	0.39259	0.00018246	-0.86787	-0.00040335	-0.47528	-0.00022089	464.75804892904233	20.811	0.67688	20.758	20.499	21.176	-0.05291					38	23	2	0	0	0	0.344	1	2751	2751		2.5775	0	1	95773			32573	4788	18915	18916	39925	39925					0.03589481034839537
PKEKTDKEPDG	11	Unmodified	_PKEKTDKEPDG_					0	0	0			REV__nc|ENSG00000149639|O94964-4|MTCL2	REV__nc|ENSG00000149639|O94964-4|MTCL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5819396972656	3	415.210342	1242.6092	0.048831	2.0275E-05	3.6296	0.0015071	3.6784	0.0015273	415.5471463581737	22.933	0.45363	22.845	22.685	23.138	-0.08761					19	15	2	0	0	0	0.33037	1	3378	3378		3.8459	0.25323	1	29187	+		32574	16480	18916	18917	39926	39926					-0.002404332612968574
PKESASSLTKI	11	Unmodified	_PKESASSLTKI_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8300170898438	2	580.829703	1159.64485	0.09425	5.4743E-05	1.661	0.00096473	1.7552	0.0010195	580.8306450807661	16.332	0.2868	16.218	16.075	16.362	-0.11434					16	9	2	0	0	0	0.46969	1	1301	1301		2.086	0.026257	1	32075	+		32575	15767	18917	18918	39927	39927					0.07141648986385007
PKESASSLTKI	11	Unmodified	_PKESASSLTKI_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	580.829703	1159.64485	0.12739	7.3991E-05	1.9742	0.0011467	2.1016	0.0012206	580.830746221144	16.233	0.34044	16.233	16.008	16.349	0	0.019229	0.00025231	NaN	2.086	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25884	+		32576	15767	18917	18918							0.07141648986385007
PKESASSLTKI	11	Unmodified	_PKESASSLTKI_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	580.829703	1159.64485	0.19106	0.00011097	1.5765	0.00091569	1.7676	0.0010267	580.8307196270524	16.253	0.37574	16.19	15.975	16.351	-0.062534	-0.02319	-0.00020962	NaN	2.086	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38944	+		32577	15767	18917	18918							0.07141648986385007
PKESSIQK	8	Unmodified	_PKESSIQK_					0	0	0		chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14;chr2:30924263-30924464|223|48.52|0.33|7.19|-|1|GALNT14,None|2	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7222900390625	2	458.758549	915.502546	-0.019666	-9.0219E-06	0.37146	0.00017041	0.35179	0.00016139	458.7585717256396	19.783	0.55243	19.783	19.493	20.045	0					44	19	4	0	0	0	0.3415	1	2401	2401		8.7454	0	1	145230			32578	149	18918	18919	39928	39928					0.041414810348555875
PKESSIQK	8	Unmodified	_PKESSIQK_					0	0	0		chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14;chr2:30924263-30924464|223|48.52|0.33|7.19|-|1|GALNT14,None|2	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7584228515625	2	458.758549	915.502546	0.18205	8.3515E-05	-0.27967	-0.0001283	-0.097621	-4.4784E-05	458.75844437101216	20.02	0.66742	19.904	19.514	20.182	-0.11592					47	22	3	0	0	0	0.27699	1	2428	2428		33.445	10.709	1	115550			32579	149	18918	18919	39929	39929					0.041414810348555875
PKESSIQK	8	Unmodified	_PKESSIQK_					0	0	0		chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14;chr2:30924263-30924464|223|48.52|0.33|7.19|-|1|GALNT14,None|2	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7220764160156	2	458.758549	915.502546	0.31491	0.00014447	-0.51573	-0.00023659	-0.20081	-9.2124E-05	458.75835244750414	19.876	0.57726	19.82	19.485	20.062	-0.055693					39	20	3	0	0	0	0.3259	1	2412	2412		24.991	6.8446	1	138970			32580	149	18918	18919	39930	39930					0.041414810348555875
PKEVNAVNMP	10	Unmodified	_PKEVNAVNMP_					0	0	0			REV__ENSG00000227124|ENST00000652011|ZNF717	REV__ENSG00000227124|ENST00000652011|ZNF717	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2686157226562	2	549.784241	1097.55393	0.23254	0.00012785	-0.16496	-9.0691E-05	0.067582	3.7156E-05	549.7841134786411	27.397	0.42561	27.376	27.215	27.641	-0.02141					25	14	2	0	0	0	0.32033	1	4600	4600		3.5965	0.31518	1	86484	+		32581	19123	18919	18920	39931	39931					0.009054817372316393
PKEVRERIQK	10	Unmodified	_PKEVRERIQK_					0	0	0		ENST00000564987.1_1_16:23535694-23546228:-|nuORF;ENSG00000103356|ENST00000449606|EARS2	ENST00000564987.1_1_16:23535694-23546228:-|nuORF	ENST00000564987.1_1_16:23535694-23546228:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8822631835938	2	641.883136	1281.75172	0.25657	0.00016469	-0.80197	-0.00051477	-0.5454	-0.00035008	641.8822831841964	105.13	0.24506	105.13	104.98	105.23	0.0018463					54	35	2	0	0	0	0.40992	1	27879	27879		1.6526	0	1	97548			32582	1831	18920	18921	39932	39932					0.12211243991396259
PKFRKLIYYII	11	Unmodified	_PKFRKLIYYII_					0	0	0		ENST00000481425.5_1_7:86825954-86846082:-|nuORF;ENSG00000135185|ENST00000257637|TMEM243	ENST00000481425.5_1_7:86825954-86846082:-|nuORF	ENST00000481425.5_1_7:86825954-86846082:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.3135070800781	3	485.302507	1452.88569	-0.070627	-3.4276E-05	-0.7364	-0.00035738	-0.80703	-0.00039165	485.3020210020202	12.743	0.72216	12.643	12.407	13.129	-0.099291					57	24	3	0	0	0	0.48486	1	347	347		0.094841	0	1	92076			32583	3850	18921	18922	39933	39933					0.1773650976429053
PKFRKLIYYII	11	Unmodified	_PKFRKLIYYII_					0	0	0		ENST00000481425.5_1_7:86825954-86846082:-|nuORF;ENSG00000135185|ENST00000257637|TMEM243	ENST00000481425.5_1_7:86825954-86846082:-|nuORF	ENST00000481425.5_1_7:86825954-86846082:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2884826660156	3	485.302507	1452.88569	-0.13816	-6.7051E-05	-0.73494	-0.00035667	-0.8731	-0.00042372	485.3019772913795	12.773	0.69917	12.706	12.463	13.162	-0.067496					54	23	4	0	0	0	0.33346	1	357	357		0.50596	0.051438	1	84104			32584	3850	18921	18922	39934	39934					0.1773650976429053
PKFVSKQK	8	Unmodified	_PKFVSKQK_					0	0	0			REV__ENST00000511906.5_1_5:37379391-37721408:+|nuORF	REV__ENST00000511906.5_1_5:37379391-37721408:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.28240966796875	2	481.295102	960.575651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.87	1	23.798	23.298	24.298	-0.072559								0	0	0	0.36336	1	3581	3581		8.5933	0	1		+		32585	13914	18922	18923	39935	39935					0.0937865454814073
PKGARDIR	8	Unmodified	_PKGARDIR_					0	0	0		ENSG00000151388|ENST00000504830|ADAMTS12;nc|ENSG00000151388|P58397-3|ADAMTS12;ADAMTS12|p.Q1343Hfs*4|1|0.49|ENSG00000151388|chr5:33561122-33561123|TC/-|frameshift_variant	ENSG00000151388|ENST00000504830|ADAMTS12	ENSG00000151388|ENST00000504830|ADAMTS12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.77239990234375	2	456.772326	911.530098	0.18903	8.6345E-05	-0.13417	-6.1284E-05	0.054865	2.5061E-05	456.77236939443594	82.283	1.2922	82.283	81.608	82.9	0					70	48	2	0	0	0	0.45307	1	21447	21447		4.756	0	1	555830			32586	4960	18923	18924	39936	39936					0.07079429085740685
PKGARDIR	8	Unmodified	_PKGARDIR_					0	0	0		ENSG00000151388|ENST00000504830|ADAMTS12;nc|ENSG00000151388|P58397-3|ADAMTS12;ADAMTS12|p.Q1343Hfs*4|1|0.49|ENSG00000151388|chr5:33561122-33561123|TC/-|frameshift_variant	ENSG00000151388|ENST00000504830|ADAMTS12	ENSG00000151388|ENST00000504830|ADAMTS12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7723693847656	2	456.772326	911.530098	0.082688	3.7769E-05	-0.476	-0.00021742	-0.39331	-0.00017965	456.772410083877	82.167	1.3484	82.236	81.675	83.023	0.068993					126	55	4	0	0	0	0.45307	1	21459	21459		4.756	0	1	446030			32587	4960	18923	18924	39937	39937					0.07079429085740685
PKGDKSQKEII	11	Unmodified	_PKGDKSQKEII_					0	0	0			REV__ENST00000496187.5_1_7:6863683-6865828:-|nuORF	REV__ENST00000496187.5_1_7:6863683-6865828:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.9065856933594	3	414.906594	1241.69795	0.10171	4.2202E-05	0.61485	0.0002551	0.71656	0.00029731	414.9065354065792	40.653	0.94587	40.653	40.334	41.28	0					134	34	6	0	0	0	0.37255	1	8690	8690		14.838	3.2065	1	2680900	+		32588	15164	18924	18925	39938	39938					0.08677026769055374
PKGGGGGG	8	Unmodified	_PKGGGGGG_					0	0	0		ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3065185546875	1	586.29435	585.287074	0.50321	0.00029503	1.5821	0.0009276	2.0854	0.0012226	586.2986860689788	65.693	0.26955	65.782	65.677	65.947	0.088882					11	9	2	0	0	0	0.34445	1	16362	16362		0	0	1	124840			32589	7551	18925	18926	39939	39939					-0.022158156392833916
PKGGGGGG	8	Unmodified	_PKGGGGGG_					0	0	0		ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.7770385742188	1	586.29435	585.287074	0.3066	0.00017976	2.2108	0.0012962	2.5174	0.0014759	586.2990897269248	68.79	1.3532	68.862	68.563	69.916	0.071938					80	48	2	0	0	0	0.34434	1	17614	17614		0.79363	0	1	201290			32590	7551	18925	18926	39940	39940					-0.022158156392833916
PKGGRQIN	8	Unmodified	_PKGGRQIN_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.25091552734375	2	435.251226	868.487899	-0.13187	-5.7398E-05	-0.032972	-1.4351E-05	-0.16484	-7.1749E-05	435.25105337760704	69.122	2.4265	69.122	67.783	70.209	0					208	88	3	0	0	0	0.45307	1	17481	17481		4.756	4.756	1	1167900			32591	5669	18926	18927	39941	39941					0.04839453677379879
PKGKGKKSTD	10	Unmodified	_PKGKGKKSTD_					0	0	0			REV__nc|ENSG00000101115|Q9UJQ4-2|SALL4	REV__nc|ENSG00000101115|Q9UJQ4-2|SALL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3036499023438	2	523.303655	1044.59276	0.4011	0.0002099	1.2454	0.00065171	1.6465	0.00086161	523.3034486081347	75.393	0.9416	75.393	74.962	75.903	0					125	33	5	0	0	0	0.37133	1	19353	19353		8.7454	1.1365	1	940740	+		32592	14247	18927	18928	39942	39942					0.07224530363282611
PKGKGKKSTD	10	Unmodified	_PKGKGKKSTD_					0	0	0			REV__nc|ENSG00000101115|Q9UJQ4-2|SALL4	REV__nc|ENSG00000101115|Q9UJQ4-2|SALL4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	523.303655	1044.59276	0.4011	0.0002099	1.2454	0.00065171	1.6465	0.00086161	523.3034486081347	75.393	0.9416	75.393	74.962	75.903	0	0	0	NaN	8.7454	125	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	940740	+		32593	14247	18927	18928							0.07224530363282611
PKGKPKSGRVW	11	Unmodified	_PKGKPKSGRVW_					0	0	0		ENSG00000110104|ENST00000227520|CCDC86	ENSG00000110104|ENST00000227520|CCDC86	ENSG00000110104|ENST00000227520|CCDC86	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.371337890625	2	620.369664	1238.72478	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.835	1	90.835	90.335	91.335	0.0003891								0	0	0	0.37501	1	24082	24082		2.7352	0	1				32594	2297	18928	18929	39943	39943					0.11496180170888692
PKGKYTGT	8	Unmodified	_PKGKYTGT_					0	0	0			REV__nc|ENSG00000053770|Q9H0R1-2|AP5M1	REV__nc|ENSG00000053770|Q9H0R1-2|AP5M1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2458190917969	2	426.23471	850.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.811	1	77.867	77.367	78.367	0.055412								0	0	0	0.37183	1	20093	20093		4.756	0.42677	1		+		32595	13580	18929	18930	39944	39944					0.023658268346594014
PKGPEPRSV	9	Unmodified	_PKGPEPRSV_					0	0	0		ENST00000527895.1_1_19:42636742-42637128:+|nuORF	ENST00000527895.1_1_19:42636742-42637128:+|nuORF	ENST00000527895.1_1_19:42636742-42637128:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7708740234375	2	483.771991	965.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.589	1	28.589	28.089	29.089	0.0004673								0	0	0	0.22933	1	5003	5003		13.042	0.51092	1				32596	11574	18930	18931	39945	39945					0.04528589646054115
PKGPRSRA	8	Unmodified	_PKGPRSRA_					0	0	0		ENST00000381298.6_1_5:55290715-55290820:-|nuORF	ENST00000381298.6_1_5:55290715-55290820:-|nuORF	ENST00000381298.6_1_5:55290715-55290820:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7590026855469	2	434.759218	867.503883	-0.099428	-4.3227E-05	-0.15102	-6.5658E-05	-0.25045	-0.00010889	434.7592139417918	79.886	1.5544	79.886	79.366	80.92	0					114	61	3	0	0	0	0.45307	2	20738	20738;20781		4.756	0	1	713060			32597	9996	18931	18932	39946;39947	39946					0.06483159914273529
PKGPRSRA	8	Unmodified	_PKGPRSRA_					0	0	0		ENST00000381298.6_1_5:55290715-55290820:-|nuORF	ENST00000381298.6_1_5:55290715-55290820:-|nuORF	ENST00000381298.6_1_5:55290715-55290820:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.75897216796875	2	434.759218	867.503883	-0.0082976	-3.6074E-06	-0.22842	-9.9309E-05	-0.23672	-0.00010292	434.7591403037889	79.851	1.3321	79.912	79.239	80.571	0.061417					109	52	3	0	0	0	0.45307	1	20682	20682		4.756	0	1	669690			32598	9996	18931	18932	39948	39948					0.06483159914273529
PKGPRSRA	8	Unmodified	_PKGPRSRA_					0	0	0		ENST00000381298.6_1_5:55290715-55290820:-|nuORF	ENST00000381298.6_1_5:55290715-55290820:-|nuORF	ENST00000381298.6_1_5:55290715-55290820:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7590026855469	2	434.759218	867.503883	-0.038131	-1.6578E-05	-0.20192	-8.7788E-05	-0.24005	-0.00010437	434.7591884155941	79.91	1.5855	79.882	79.226	80.812	-0.028923					103	58	3	0	0	0	0.45307	1	20747	20747		4.756	0	1	731140			32599	9996	18931	18932	39949	39949					0.06483159914273529
PKGQPKMK	8	Unmodified	_PKGQPKMK_					0	0	0			REV__ENSG00000125686|ENST00000300651|MED1	REV__ENSG00000125686|ENST00000300651|MED1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.27642822265625	2	457.26803	912.521507	-0.74761	-0.00034186	0.48317	0.00022094	-0.26444	-0.00012092	457.268255657685	35.17	0.74708	35.246	34.843	35.59	0.075306					43	26	2	0	0	0	0.34131	1	7025	7025		4.3292	4.3292	1	155880	+		32600	15278	18932	18933	39950	39950					0.06174739124912776
PKGQRVVERRG	11	Unmodified	_PKGQRVVERRG_					0	0	0		ENST00000262305.8_2_16:570861-571326:+|nuORF	ENST00000262305.8_2_16:570861-571326:+|nuORF	ENST00000262305.8_2_16:570861-571326:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8831176757812	2	641.378552	1280.74255	0.54104	0.00034701	0.98374	0.00063095	1.5248	0.00097796	641.8820132114935	95.724	0.93621	95.721	95.347	96.283	-0.0038147					131	88	3	0	0	0	0.46655	1	25654	25654		2.4985	0.21571	1	160930			32601	8984	18933	18934	39951	39951					0.11340895425723829
PKGSALRNA	9	Unmodified	_PKGSALRNA_					0	0	0		nc|ENSG00000125675|P42263|GRIA3	nc|ENSG00000125675|P42263|GRIA3	nc|ENSG00000125675|P42263|GRIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2642822265625	2	457.264333	912.514114	0.067144	3.0703E-05	-0.29071	-0.00013293	-0.22357	-0.00010223	457.2641732370013	69.428	1.9513	69.494	68.958	70.909	0.066048					132	69	3	0	0	0	0.31417	1	17533	17533		6.7232	0.36906	1	524100			32602	12685	18934	18935	39952	39952					0.05435722848835667
PKGTGSLLGLF	11	Unmodified	_PKGTGSLLGLF_					0	0	0		nc|ENSG00000213347|Q9BW11-4|MXD3	nc|ENSG00000213347|Q9BW11-4|MXD3	nc|ENSG00000213347|Q9BW11-4|MXD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3171997070312	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.84	1	117.82	117.32	118.32	-0.024147								0	0	0	0.37501	1	30486	30486		2.7352	0.67545	1				32603	12941	18935	18936	39953	39953					0.08222889028456848
PKGTGSLLGLF	11	Unmodified	_PKGTGSLLGLF_					0	0	0		nc|ENSG00000213347|Q9BW11-4|MXD3	nc|ENSG00000213347|Q9BW11-4|MXD3	nc|ENSG00000213347|Q9BW11-4|MXD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3177490234375	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.96	1	117.94	117.44	118.44	-0.024147								0	0	0	0.38137	1	30514	30514		1.0715	0.38109	1				32604	12941	18935	18936	39954	39954					0.08222889028456848
PKHDPHSK	8	Unmodified	_PKHDPHSK_					0	0	0			REV__ENST00000590548.5_1_19:11594499-11598073:-|nuORF	REV__ENST00000590548.5_1_19:11594499-11598073:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.217041015625	2	473.248683	944.482814	-0.066763	-3.1595E-05	2.856	0.0013516	2.7893	0.00132	473.2500240001263	15.044	0.45873	14.98	14.846	15.305	-0.064414					22	15	2	0	0	0	0.34167	1	954	954		11.64	0.81637	1	118800	+		32605	16956	18936	18937	39955	39955					0.008351498147590064
PKHEEEAF	8	Unmodified	_PKHEEEAF_					0	0	0		ENST00000569585.1_1_16:1822224-1822659:-|nuORF;ENSG00000074071|ENST00000397375|MRPS34	ENST00000569585.1_1_16:1822224-1822659:-|nuORF	ENST00000569585.1_1_16:1822224-1822659:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7977294921875	2	493.732532	985.45051	0.33229	0.00016406	0.054162	2.6741E-05	0.38645	0.0001908	493.7325941980825	40.843	0.46288	40.843	40.576	41.039	0					23	16	2	0	0	0	0.34319	1	8684	8684		0	0	1	182010			32606	1013	18937	18938	39956	39956					-0.042796823789103655
PKHESDCILL	10	Unmodified	_PKHESDCILL_					0	0	0		nc|ENSG00000143409|Q8N5J2-2|MINDY1;nc|ENSG00000143409|Q8N5J2-4|MINDY1;ENSG00000143409|ENST00000683666|MINDY1;nc|ENSG00000143409|Q8N5J2-3|MINDY1	nc|ENSG00000143409|Q8N5J2-2|MINDY1	nc|ENSG00000143409|Q8N5J2-2|MINDY1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.7977294921875	2	577.797349	1153.58014	0.44051	0.00025452	0.094263	5.4465E-05	0.53477	0.00030899	577.7974962919237	51.116	0.68544	51.162	50.794	51.479	0.046577					62	25	3	0	0	0	0.21126	1	11907	11907		31.268	2.1868	1	487320			32607	4513	18938	18939	39957	39957					0.009497509087395883
PKHESDCILL	10	Unmodified	_PKHESDCILL_					0	0	0		nc|ENSG00000143409|Q8N5J2-2|MINDY1;nc|ENSG00000143409|Q8N5J2-4|MINDY1;ENSG00000143409|ENST00000683666|MINDY1;nc|ENSG00000143409|Q8N5J2-3|MINDY1	nc|ENSG00000143409|Q8N5J2-2|MINDY1	nc|ENSG00000143409|Q8N5J2-2|MINDY1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	577.797349	1153.58014	0.46826	0.00027056	-0.53641	-0.00030994	-0.068153	-3.9379E-05	577.7975033366761	51.133	0.93882	51.142	50.567	51.506	0.0095634	0.010497	-0.00046574	NaN	31.268	68	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535370			32608	4513	18938	18939							0.009497509087395883
PKHFRLSI	8	Unmodified	_PKHFRLSI_					0	0	0			REV__ENST00000246174.6_2_X:101854167-101854461:+|nuORF	REV__ENST00000246174.6_2_X:101854167-101854461:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.80328369140625	2	499.300719	996.586885	0.014625	7.3024E-06	2.0617	0.0010294	2.0763	0.0010367	499.8027815053025	12.262	0.24519	12.262	12.119	12.364	0					24	9	3	0	0	0	0.46022	1	62	62		2.3027	0.65011	1	65458	+		32609	19506	18939	18940	39958	39958					0.08845476642284211
PKKARLSWNE	10	Unmodified	_PKKARLSWNE_					0	0	0			REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	REV__nc|ENSG00000149452|Q8TCC7-5|SLC22A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.23162841796875	3	410.231412	1227.67241	-0.10233	-4.198E-05	0.63441	0.00026025	0.53207	0.00021827	410.23162669503	103.2	0.19381	103.21	103.12	103.31	0.0082626					33	28	2	0	0	0	0.4022	1	27416	27416		3.0723	0.33707	1	4847800	+		32610	16463	18940	18941	39959	39959					0.0676759703726475
PKKERLALY	9	Unmodified	_PKKERLALY_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-2|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5	ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5	nc|ENSG00000249715|A0AVI2-4|FER1L5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.340576171875	2	559.340041	1116.66553	0.14854	8.3083E-05	0.77721	0.00043472	0.92575	0.00051781	559.3402471580222	31.109	0.30202	31.109	31.007	31.309	0					22	10	3	0	0	0	0.29176	1	5794	5794		10.074	1.9184	1	156680			32611	8586;12972	18941	18942	39960	39960					0.11186284156701731
PKKERLALY	9	Unmodified	_PKKERLALY_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-2|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5	ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5	nc|ENSG00000249715|A0AVI2-4|FER1L5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	559.340041	1116.66553	0.17766	9.9375E-05	-0.06206	-3.4713E-05	0.1156	6.4662E-05	559.3397781567509	31.071	0.29273	31.098	30.975	31.267	0.027157	-0.024526	-0.0003245	NaN	10.074	20	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140100			32612	8586;12972	18941	18942							0.11186284156701731
PKKGTDRIK	9	Unmodified	_PKKGTDRIK_					0	0	0			REV__ENSG00000213988|ENST00000418063|ZNF90	REV__ENSG00000213988|ENST00000418063|ZNF90	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8216552734375	2	521.822015	1041.62948	0.63017	0.00032884	-0.79055	-0.00041253	-0.16039	-8.3693E-05	521.821557583609	29.125	0.62691	29.125	28.924	29.551	0					47	22	3	0	0	0	0.31417	1	5252	5252		6.7232	1.4925	1	472810	+		32613	19052	18942	18943	39961	39961					0.110328269798174
PKKGTDRIK	9	Unmodified	_PKKGTDRIK_					0	0	0			REV__ENSG00000213988|ENST00000418063|ZNF90	REV__ENSG00000213988|ENST00000418063|ZNF90	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.822015	1041.62948	0.63017	0.00032884	-0.79055	-0.00041253	-0.16039	-8.3693E-05	521.821557583609	29.125	0.62691	29.125	28.924	29.551	0	0.022404	-0.00018112	NaN	6.7232	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472810	+		32614	19052	18942	18943							0.110328269798174
PKKGTDRIK	9	Unmodified	_PKKGTDRIK_					0	0	0			REV__ENSG00000213988|ENST00000418063|ZNF90	REV__ENSG00000213988|ENST00000418063|ZNF90	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	521.822015	1041.62948	0.41342	0.00021573	-0.60731	-0.00031691	-0.19389	-0.00010118	521.8216155822039	29.049	0.82743	29.062	28.858	29.685	0.012266	-0.040598	1.0115E-05	NaN	6.7232	53	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	544470	+		32615	19052	18942	18943							0.110328269798174
PKKGTDRIK	9	Unmodified	_PKKGTDRIK_					0	0	0			REV__ENSG00000213988|ENST00000418063|ZNF90	REV__ENSG00000213988|ENST00000418063|ZNF90	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	521.822015	1041.62948	0.2704	0.0001411	-0.46524	-0.00024277	-0.19485	-0.00010167	521.8217390050027	29.107	0.65718	29.12	28.907	29.564	0.013474	0.018194	0.00015838	NaN	6.7232	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	515520	+		32616	19052	18942	18943							0.110328269798174
PKKILKNTFLF	11	Unmodified	_PKKILKNTFLF_					0	0	0		ENST00000392547.6_1_2:175425573-175425708:-|nuORF	ENST00000392547.6_1_2:175425573-175425708:-|nuORF	ENST00000392547.6_1_2:175425573-175425708:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.26904296875	3	450.283224	1347.82784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.057	1	85.044	84.544	85.544	-0.01284								0	0	0	0.38124	1	22312	22312		1.2148	0	1				32617	10033	18943	18944	39962	39962					0.16784247838813826
PKKNGLYLSL	10	Unmodified	_PKKNGLYLSL_					0	0	0		nc|ENSG00000189077|Q9BXJ8-2|TMEM120A;ENSG00000189077|ENST00000493111|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2799682617188	2	566.839874	1131.66519	0.26727	0.0001515	0.59096	0.00033498	0.85823	0.00048648	566.8401937120957	67.849	0.28777	67.849	67.623	67.911	0					12	9	2	0	0	0	0.31039	1	17031	17031		13.042	0	1	126620			32618	7800	18944	18945	39963	39963					0.10462864436840391
PKKNSESQL	9	Unmodified	_PKKNSESQL_					0	0	0			REV__ENST00000597326.5_3_19:6361768-6366330:+|nuORF	REV__ENST00000597326.5_3_19:6361768-6366330:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2490234375	2	515.780013	1029.54547	0.035514	1.8317E-05	0.8859	0.00045693	0.92142	0.00047525	515.7806943967377	14.65	0.41986	14.65	14.505	14.925	0					32	14	3	0	0	0	0.26099	1	861	861		2.9952	0.69251	1	94958	+		32619	15275	18945	18946	39964	39964					0.03188251092274186
PKKQERVNK	9	Unmodified	_PKKQERVNK_					0	0	0		ENSG00000181378|ENST00000341552|CFAP65;nc|ENSG00000181378|Q6ZU64-4|CFAP65;nc|ENSG00000181378|Q6ZU64-5|CFAP65;nc|ENSG00000181378|Q6ZU64-3|CFAP65;ENST00000462848.5_1_2:219894910-219906234:-|nuORF	ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.6444702148438	2	563.838197	1125.66184	-0.050184	-2.8296E-05	-1.7296	-0.0009752	-1.7798	-0.0010035	563.83717948817	14.776	0.33624	14.712	14.589	14.926	-0.064413					20	11	2	0	0	0	0.25938	1	805	805		4.3292	0.73274	1	64102			32620	7231	18946	18947	39965	39965					0.10403614382857995
PKKQVVHKRLH	11	Unmodified	_PKKQVVHKRLH_					0	0	0			REV__nc|ENSG00000178150|Q8NC26-2|ZNF114	REV__nc|ENSG00000178150|Q8NC26-2|ZNF114	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.271240234375	3	457.289484	1368.84662	0.19849	9.0766E-05	-1.8316	-0.00083757	-1.6331	-0.00074681	457.28823952294516	37.242	0.5447	37.329	37.09	37.634	0.08741					49	19	3	0	0	0	0.33296	1	7609	7609		0.40827	0	1	666860	+		32621	18020	18947	18948	39966	39966					0.17695222253269094
PKKRFVKERF	10	Unmodified	_PKKRFVKERF_					0	0	0			REV__TNS2|p.T701Cfs*52|1|0.31|ENSG00000111077|chr12:53059738-53059747|GCCTACAGCA/-|frameshift_variant	REV__TNS2|p.T701Cfs*52|1|0.31|ENSG00000111077|chr12:53059738-53059747|GCCTACAGCA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.635986328125	3	445.606701	1333.79827	0.054828	2.4432E-05	-0.92325	-0.00041141	-0.86842	-0.00038698	445.60634773210006	35.48	0.16518	35.48	35.382	35.547	0					6	5	2	0	0	0	0.32068	1	7096	7096		0.62683	0	1	110390	+		32622	14702	18948	18949	39967	39967					0.14472728613350228
PKKTISVAR	9	Unmodified	_PKKTISVAR_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.295654296875	2	500.319109	998.623664	0.15078	7.5436E-05	-0.044217	-2.2123E-05	0.10656	5.3313E-05	500.3188844061957	16.207	0.55516	16.093	15.866	16.421	-0.11434					30	18	2	0	0	0	0.25123	1	1251	1251		12.241	0	1	95117			32623	3102	18949	18950	39968	39968					0.12429728468180201
PKKTISVAR	9	Unmodified	_PKKTISVAR_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7187194824219	2	500.319109	998.623664	0.21901	0.00010957	-0.099399	-4.9731E-05	0.11961	5.9843E-05	500.31887443571594	16.108	0.4585	16.046	15.866	16.324	-0.062534					31	15	3	0	0	0	0.25123	1	1224	1224		12.241	2.8575	1	78807			32624	3102	18949	18950	39969	39969					0.12429728468180201
PKKVCIVK	8	Unmodified	_PKKVCIVK_					0	0	0		nc|ENSG00000137266|A1A5C7-3|SLC22A23;nc|ENSG00000137266|A1A5C7-2|SLC22A23;ENST00000497691.5_1_6:3273291-3410459:-|nuORF;ENSG00000137266|ENST00000406686|SLC22A23	nc|ENSG00000137266|A1A5C7-3|SLC22A23	nc|ENSG00000137266|A1A5C7-3|SLC22A23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7690124511719	2	457.796423	913.578294	0.35213	0.00016121	-0.30971	-0.00014179	0.042422	1.942E-05	457.79628250619425	34.11	0.55634	34.11	33.78	34.336	0					27	19	2	0	0	0	0.344	1	6738	6738		0.69038	0	1	157010			32625	4039	18950	18951	39970	39970					0.11804786681432233
PKKWRLWIS	9	Unmodified	_PKKWRLWIS_					0	0	0			REV__ENST00000559327.1_1_15:65676349-65688574:-|nuORF	REV__ENST00000559327.1_1_15:65676349-65688574:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.8899841308594	3	405.244992	1212.71315	-0.069766	-2.8272E-05	2.1986	0.00089098	2.1289	0.00086271	405.24618287636434	43.736	0.67744	43.813	43.347	44.024	0.077518					54	24	3	0	0	0	0.25622	1	9536	9536		2.2828	0	1	228390	+		32626	14385	18951	18952	39971	39971					0.11529983147556777
PKLCLIKD	8	Unmodified	_PKLCLIKD_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.263916015625	2	465.278063	928.541574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.461	1	19.461	18.961	19.961	0								0	0	0	0.37078	1	2241	2241		5.2307	0	1				32627	6111	18952	18953	39972	39972					0.07444490064870024
PKLCPCLR	8	Unmodified	_PKLCPCLR_					0	0	0		nc|ENSG00000116990|P12524-2|MYCL	nc|ENSG00000116990|P12524-2|MYCL	nc|ENSG00000116990|P12524-2|MYCL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2637023925781	2	465.256608	928.498663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.374	1	19.258	18.758	19.758	-0.11592								0	0	0	0.35466	1	2217	2217		12.532	4.6214	1				32628	12669	18953	18954	39973	39973					0.031553967357695
PKLIQNWKIG	10	Unmodified	_PKLIQNWKIG_					0	0	0		nc|ENSG00000188393|Q6UVW9-2|CLEC2A;ENSG00000188393|ENST00000455827|CLEC2A	nc|ENSG00000188393|Q6UVW9-2|CLEC2A	nc|ENSG00000188393|Q6UVW9-2|CLEC2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.324951171875	2	598.861141	1195.70773	0.20957	0.0001255	-1.1285	-0.00067582	-0.91895	-0.00055032	598.8595680298181	96.471	0.029594	96.471	96.448	96.478	0					4	2	2	0	0	0	0.32132	1	25774	25774		1.4819	0	1	25994			32629	7748	18954	18955	39974	39974					0.1177025956505986
PKLKWIQEY	9	Unmodified	_PKLKWIQEY_					0	0	0		ENSG00000107562|ENST00000343575|CXCL12;nc|ENSG00000107562|P48061-5|CXCL12;nc|ENSG00000107562|P48061|CXCL12;nc|ENSG00000107562|P48061-6|CXCL12;ENST00000496375.1_1_10:44874083-44881535:-|nuORF;nc|ENSG00000107562|P48061-3|CXCL12;nc|ENSG00000107562|P48061-4|CXCL12	ENSG00000107562|ENST00000343575|CXCL12	ENSG00000107562|ENST00000343575|CXCL12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8391723632812	2	602.839874	1203.66519	0.52086	0.000314	-0.97864	-0.00058996	-0.45778	-0.00027597	602.8394307027377	19.92	0.32624	19.864	19.652	19.978	-0.055693					18	11	2	0	0	0	0.35563	1	2385	2385		0.52476	0	1	32691			32630	2133	18955	18956	39975	39975					0.07150864436857773
PKLKWIQEY	9	Unmodified	_PKLKWIQEY_					0	0	0		ENSG00000107562|ENST00000343575|CXCL12;nc|ENSG00000107562|P48061-5|CXCL12;nc|ENSG00000107562|P48061|CXCL12;nc|ENSG00000107562|P48061-6|CXCL12;ENST00000496375.1_1_10:44874083-44881535:-|nuORF;nc|ENSG00000107562|P48061-3|CXCL12;nc|ENSG00000107562|P48061-4|CXCL12	ENSG00000107562|ENST00000343575|CXCL12	ENSG00000107562|ENST00000343575|CXCL12	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	602.839874	1203.66519	0.38707	0.00023334	-0.84622	-0.00051014	-0.45915	-0.0002768	602.8391810299455	19.895	0.41215	19.895	19.574	19.986	0	0.015352	4.1309E-05	NaN	0.52476	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37772			32631	2133	18955	18956							0.07150864436857773
PKLLQMEKRPS	11	Unmodified	_PKLLQMEKRPS_					0	0	0		ENSG00000235750|ENST00000423313|KIAA0040	ENSG00000235750|ENST00000423313|KIAA0040	ENSG00000235750|ENST00000423313|KIAA0040	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.7750244140625	3	442.92359	1325.74894	-0.11975	-5.304E-05	2.7791	0.0012309	2.6594	0.0011779	443.2581208858432	14.771	0.33377	14.666	14.489	14.823	-0.10466					23	11	3	0	0	0	0.33263	1	864	864		2.084	0.97421	1	64288			32632	8496	18956	18957	39976	39976					0.09909652542251024
PKLLQVAATFL	11	Unmodified	_PKLLQVAATFL_					0	0	0			REV__ENSG00000241058|ENST00000377304|NSUN6	REV__ENSG00000241058|ENST00000377304|NSUN6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	400.58026123046875	3	400.916541	1199.72779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.29	1	104.29	103.79	104.79	0.0011444								0	0	0	0.38114	1	27723	27723		1.3296	0.25818	1		+		32633	19176	18957	18958	39977	39977					0.1359201050502179
PKLLRREV	8	Unmodified	_PKLLRREV_					0	0	0			REV__ENST00000444619.5_1_3:11314090-11324023:+|nuORF	REV__ENST00000444619.5_1_3:11314090-11324023:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3029479980469	2	505.827101	1009.63965	0.32732	0.00016557	-0.0025856	-1.3079E-06	0.32474	0.00016426	505.82704548041465	40.175	0.71793	40.175	39.858	40.576	0					38	25	2	0	0	0	0.34131	1	8664	8664		12.532	0	1	414730	+		32634	21069	18958	18959	39978	39978					0.13521434705080537
PKLLVKSVP	9	Unmodified	_PKLLVKSVP_					0	0	0			REV__ENSG00000007376|ENST00000007264|RPUSD1	REV__ENSG00000007376|ENST00000007264|RPUSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7558898925781	2	490.828778	979.643003	0.42759	0.00020987	-0.15058	-7.3909E-05	0.27701	0.00013596	490.82873817601023	35.683	0.66349	35.765	35.57	36.233	0.082355					31	23	2	0	0	0	0.24993	1	7162	7162		13.042	1.5478	1	129800	+		32635	13386	18959	18960	39979	39979					0.15236684759088348
PKLNIQIKTLA	11	Unmodified	_PKLNIQIKTLA_					0	0	0		nc|ENSG00000147202|O60879-2|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2	nc|ENSG00000147202|O60879-2|DIAPH2	nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.75506591796875	3	413.599212	1237.77581	0.55455	0.00022936	-0.44204	-0.00018283	0.11251	4.6533E-05	413.59896120604475	58.317	0.89029	58.301	57.691	58.581	-0.015823					41	18	4	0	0	0	0.33236	1	14020	14020		4.4062	3.0765	1	233530			32636	4754	18960	18961	39980	39980					0.16643084425095367
PKLNIQIKTLA	11	Unmodified	_PKLNIQIKTLA_					0	0	0		nc|ENSG00000147202|O60879-2|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2	nc|ENSG00000147202|O60879-2|DIAPH2	nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	413.599212	1237.77581	0.056574	2.3399E-05	0.21353	8.8316E-05	0.27011	0.00011172	413.59917319053886	58.357	0.48872	58.357	58.075	58.564	0	0.037506	0.00035224	NaN	7.0371	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193380			32637	4754	18960	18961							0.16643084425095367
PKLNIQIKTLA	11	Unmodified	_PKLNIQIKTLA_					0	0	0		nc|ENSG00000147202|O60879-2|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2	nc|ENSG00000147202|O60879-2|DIAPH2	nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	413.599212	1237.77581	0.30874	0.00012769	-0.17441	-7.2137E-05	0.13432	5.5555E-05	413.59905344305696	58.215	0.49875	58.301	57.997	58.496	0.085621	-0.0187	-0.00012912	NaN	7.0371	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351790			32638	4754	18960	18961							0.16643084425095367
PKLRTRKT	8	Unmodified	_PKLRTRKT_					0	0	0			REV__ENST00000533085.2_1_12:89894792-89896268:+|nuORF	REV__ENST00000533085.2_1_12:89894792-89896268:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.80328369140625	2	500.324725	998.634898	0.0082501	4.1277E-06	-1.2654	-0.00063313	-1.2572	-0.000629	500.32407260282514	12.256	0.16954	12.256	12.194	12.364	0					10	5	2	0	0	0	0.34437	1	62	62		0.69038	0	1	51097	+		32639	22041	18961	18962	39981	39981					0.13552550562303622
PKLSSKNR	8	Unmodified	_PKLSSKNR_					0	0	0		ENST00000270645.7_1_19:50046533-50046872:+|nuORF	ENST00000270645.7_1_19:50046533-50046872:+|nuORF	ENST00000270645.7_1_19:50046533-50046872:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2637939453125	2	465.279983	928.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.127	1	19.127	18.627	19.627	0								0	0	0	0.36486	1	2140	2140		7.9102	0	1				32640	9080	18962	18963	39982	39982					0.07828295882939074
PKLSSKNR	8	Unmodified	_PKLSSKNR_					0	0	0		ENST00000270645.7_1_19:50046533-50046872:+|nuORF	ENST00000270645.7_1_19:50046533-50046872:+|nuORF	ENST00000270645.7_1_19:50046533-50046872:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.26373291015625	2	465.279983	928.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.302	1	19.302	18.802	19.802	0								0	0	0	0.37078	1	2193	2193		5.2307	0	1				32641	9080	18962	18963	39983	39983					0.07828295882939074
PKLSSKNR	8	Unmodified	_PKLSSKNR_					0	0	0		ENST00000270645.7_1_19:50046533-50046872:+|nuORF	ENST00000270645.7_1_19:50046533-50046872:+|nuORF	ENST00000270645.7_1_19:50046533-50046872:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2639465332031	2	465.279983	928.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.287	1	19.232	18.732	19.732	-0.055693								0	0	0	0.37078	1	2187	2187		5.2307	0	1				32642	9080	18962	18963	39984	39984					0.07828295882939074
PKLTAHKVI	9	Unmodified	_PKLTAHKVI_					0	0	0		ENSG00000118620|ENST00000261560|ZNF430	ENSG00000118620|ENST00000261560|ZNF430	ENSG00000118620|ENST00000261560|ZNF430	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.3482360839844	2	503.824027	1005.6335	0.35336	0.00017803	0.55092	0.00027756	0.90428	0.0004556	503.82414021050533	32.616	0.35047	32.671	32.441	32.791	0.054371					19	12	2	0	0	0	0.24848	1	6203	6203		9.3831	3.1773	1	113290			32643	2836	18963	18964	39985	39985					0.13090916473549896
PKLTLLNL	8	Unmodified	_PKLTLLNL_					0	0	0			REV__ENSG00000178802|ENST00000352410|MPI	REV__ENSG00000178802|ENST00000352410|MPI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2692565917969	2	456.299853	910.585153	0.15798	7.2086E-05	1.3488	0.00061544	1.5067	0.00068753	456.3005494052003	39.573	0.88803	39.672	39.372	40.26	0.099407					43	31	2	0	0	0	0.34046	1	8438	8438		5.2307	0	1	153740	+		32644	18046	18964	18965	39986	39986					0.1262842283365444
PKMIPERKQL	10	Unmodified	_PKMIPERKQL_					0	0	0		nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2;AFAP1L2|p.L204Cfs*15|1|0.31|ENSG00000169129|chr10:114315563-114315563|A/-|frameshift_variant	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3723754882812	2	620.365733	1238.71691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.302	1	98.364	97.864	98.864	0.061516								0	0	0	0.37664	1	26310	26310		3.5965	0	1				32645	6329	18965	18966	39987	39987					0.10710284859101193
PKMLANIHTQS	11	Unmodified	_PKMLANIHTQS_					0	0	0		ENSG00000171501|ENST00000373688|OR1N2	ENSG00000171501|ENST00000373688|OR1N2	ENSG00000171501|ENST00000373688|OR1N2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3274536132812	2	620.329347	1238.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.2	1	101.19	100.69	101.69	-0.0054703								0	0	0	0.36517	1	27024	27024		4.897	1.3005	1				32646	6551	18966	18967	39988	39988					0.03436531065676718
PKNIINKARNA	11	Unmodified	_PKNIINKARNA_					0	0	0			REV__nc|ENSG00000089177|Q96L93-5|KIF16B	REV__nc|ENSG00000089177|Q96L93-5|KIF16B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8692016601562	2	619.870028	1237.7255	-0.054767	-3.3948E-05	-0.14606	-9.0541E-05	-0.20083	-0.00012449	619.8694778459851	97.454	0.74741	97.525	97.131	97.879	0.070465					192	80	3	0	0	0	0.46475	1	26071	26071		2.7352	0.89096	1	259430	+		32647	14026	18967	18968	39989	39989					0.11614974819940471
PKNKIKVYIY	10	Unmodified	_PKNKIKVYIY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.22796630859375	3	422.592058	1264.75434	-0.055554	-2.3477E-05	1.4839	0.0006271	1.4284	0.00060362	422.59265096919586	49.075	0.52101	49.12	49.045	49.566	0.044891					31	18	2	0	0	0	0.32068	1	11412	11412		3.5871	0.95582	1	238240			32648	4955	18968	18969	39990	39990					0.13255699396381715
PKNKQPKQ	8	Unmodified	_PKNKQPKQ_					0	0	0			REV__nc|ENSG00000165525|O60524-5|NEMF	REV__nc|ENSG00000165525|O60524-5|NEMF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7798767089844	2	484.287808	966.561064	0.028711	1.3904E-05	0.12262	5.9385E-05	0.15133	7.3289E-05	484.2877149519958	15.857	0.99036	15.747	15.491	16.481	-0.10981					60	33	3	0	0	0	0.45169	1	1324	1324		5.2307	0.90143	1	180110	+		32649	17243	18969	18970	39991	39991					0.07644582399996125
PKNKQPKQ	8	Unmodified	_PKNKQPKQ_					0	0	0			REV__nc|ENSG00000165525|O60524-5|NEMF	REV__nc|ENSG00000165525|O60524-5|NEMF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.77984619140625	2	484.287808	966.561064	0.21938	0.00010624	0.11409	5.5253E-05	0.33347	0.0001615	484.28790385540395	16.416	0.34753	16.353	16.147	16.495	-0.062532					18	11	2	0	0	0	0.45169	1	1311	1311		5.2307	2.6532	1	26185	+		32650	17243	18969	18970	39992	39992					0.07644582399996125
PKNKQPKQ	8	Unmodified	_PKNKQPKQ_					0	0	0			REV__nc|ENSG00000165525|O60524-5|NEMF	REV__nc|ENSG00000165525|O60524-5|NEMF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	484.287808	966.561064	0.012298	5.9557E-06	-0.015036	-7.282E-06	-0.0027386	-1.3263E-06	484.28769574473796	15.757	0.74277	15.757	15.471	16.214	0	0.0011148	-8.5331E-05	NaN	5.2307	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187850	+		32651	17243	18969	18970							0.07644582399996125
PKNKQPKQ	8	Unmodified	_PKNKQPKQ_					0	0	0			REV__nc|ENSG00000165525|O60524-5|NEMF	REV__nc|ENSG00000165525|O60524-5|NEMF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	484.287808	966.561064	0.028711	1.3904E-05	0.12262	5.9385E-05	0.15133	7.3289E-05	484.2877149519958	15.857	0.99036	15.747	15.491	16.481	-0.10981	-0.0089785	4.8003E-05	NaN	5.2307	60	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180110	+		32652	17243	18969	18970							0.07644582399996125
PKNKQPKQ	8	Unmodified	_PKNKQPKQ_					0	0	0			REV__nc|ENSG00000165525|O60524-5|NEMF	REV__nc|ENSG00000165525|O60524-5|NEMF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	484.287808	966.561064	0.092491	4.4792E-05	0.12723	6.1616E-05	0.21972	0.00010641	484.2877314217901	15.828	0.72127	15.764	15.424	16.145	-0.064413	0.0078637	5.2464E-05	NaN	5.2307	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217510	+		32653	17243	18969	18970							0.07644582399996125
PKNKRPKE	8	Unmodified	_PKNKRPKE_					0	0	0		ENSG00000104213|ENST00000251630|PDGFRL	ENSG00000104213|ENST00000251630|PDGFRL	ENSG00000104213|ENST00000251630|PDGFRL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8009033203125	2	498.801083	995.587613	0.1014	5.0581E-05	-0.75884	-0.00037851	-0.65743	-0.00032793	498.8009650323447	12.299	0.31897	12.202	12.037	12.356	-0.096607					18	11	2	0	0	0	0.45544	1	97	97		3.9444	0.66309	1	71021			32654	1872	18970	18971	39993	39993					0.08964271291324621
PKNKRPKE	8	Unmodified	_PKNKRPKE_					0	0	0		ENSG00000104213|ENST00000251630|PDGFRL	ENSG00000104213|ENST00000251630|PDGFRL	ENSG00000104213|ENST00000251630|PDGFRL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.80328369140625	2	498.801083	995.587613	0.34665	0.00017291	-0.35075	-0.00017495	-0.0040996	-2.0449E-06	498.80114221650166	24.102	2.2077	24.03	23.368	25.575	-0.072559					233	76	6	0	0	0	0.3474	1	3594	3594		25.399	7.253	1	5440000			32655	1872	18970	18971	39994	39994					0.08964271291324621
PKNKRPKE	8	Unmodified	_PKNKRPKE_					0	0	0		ENSG00000104213|ENST00000251630|PDGFRL	ENSG00000104213|ENST00000251630|PDGFRL	ENSG00000104213|ENST00000251630|PDGFRL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.8034362792969	2	498.801083	995.587613	0.32316	0.00016119	-0.25173	-0.00012556	0.071426	3.5627E-05	498.80116062076354	24.097	1.6602	24.058	23.651	25.312	-0.038927					145	57	3	0	0	0	0.28696	1	3597	3597		32.305	8.2849	1	5275900			32656	1872	18970	18971	39995	39995					0.08964271291324621
PKNKRPKE	8	Unmodified	_PKNKRPKE_					0	0	0		ENSG00000104213|ENST00000251630|PDGFRL	ENSG00000104213|ENST00000251630|PDGFRL	ENSG00000104213|ENST00000251630|PDGFRL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.801083	995.587613	-0.09375	-4.6762E-05	-1.469	-0.00073275	-1.5628	-0.00077951	498.80106208862344	12.285	0.29369	12.217	12.083	12.377	-0.06806	0.0072321	-0.00054342	NaN	3.9444	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51143			32657	1872	18970	18971							0.08964271291324621
PKNVNKRHPF	10	Unmodified	_PKNVNKRHPF_					0	0	0			REV__nc|ENSG00000134874|Q86YF9-2|DZIP1	REV__nc|ENSG00000134874|Q86YF9-2|DZIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.522216796875	3	412.903518	1235.68872	0.26916	0.00011114	-1.4382	-0.00059385	-1.1691	-0.00048271	412.9028800444657	40.947	0.4767	41.038	40.823	41.299	0.090736					37	17	3	0	0	0	0.32051	1	8846	8846		1.9064	0	1	391800	+		32658	15705	18971	18972	39996	39996					0.08030722994021744
PKPAPPKGKP	10	Unmodified	_PKPAPPKGKP_					0	0	0			REV__ENSG00000106483|ENST00000436072|SFRP4	REV__ENSG00000106483|ENST00000436072|SFRP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.81591796875	2	508.816202	1015.61785	-0.040993	-2.0858E-05	-0.17777	-9.0453E-05	-0.21876	-0.00011131	508.816769989177	39.023	2.7919	39.023	38.649	41.441	0					345	101	5	0	0	0	0.3258	1	8884	8884		17.113	0	1	80412000	+		32659	14525	18972	18973	39997	39997					0.11066629956508223
PKPARAAP	8	Unmodified	_PKPARAAP_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.88067626953125	2	404.245412	806.476272	-0.2496	-0.0001009	0.58367	0.00023595	0.33406	0.00013504	404.24557129575703	26.064	0.61051	26.064	25.769	26.379	0					32	21	2	0	0	0	0.34337	1	4320	4320		5.2307	0	1	102750			32660	6042	18973	18974	39998	39998					0.06529256654027904
PKPARAAP	8	Unmodified	_PKPARAAP_					0	0	0		ENSG00000166197|ENST00000605788|NOLC1;nc|ENSG00000166197|Q14978-3|NOLC1;nc|ENSG00000166197|Q14978-2|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	ENSG00000166197|ENST00000605788|NOLC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.85614013671875	2	404.245412	806.476272	-0.35033	-0.00014162	0.46295	0.00018715	0.11262	4.5527E-05	404.2455436706302	26.118	0.50311	26.08	25.813	26.316	-0.038671					31	17	2	0	0	0	0.34247	1	4256	4256		8.5933	3.3626	1	114770			32661	6042	18973	18974	39999	39999					0.06529256654027904
PKPFTAITV	9	Unmodified	_PKPFTAITV_					0	0	0		nc|ENSG00000080224|Q9UF33|EPHA6;ENSG00000080224|ENST00000389672|EPHA6	nc|ENSG00000080224|Q9UF33|EPHA6	nc|ENSG00000080224|Q9UF33|EPHA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7994689941406	2	487.289485	972.564418	0.49302	0.00024024	-0.20125	-9.8068E-05	0.29177	0.00014218	487.2896460804139	85.709	2.4062	85.7	84.714	87.12	-0.0090027					130	93	2	0	0	0	0.25989	1	22511	22511		14.838	0.25658	1	174650			32662	1151	18974	18975	40000	40000					0.0770383245398989
PKPNPNPK	8	Unmodified	_PKPNPNPK_					0	0	0		ENST00000430562.6_1_X:2537498-2544672:+|nuORF;ENST00000414513.7_1_X:2536701-2544672:+|nuORF	ENST00000430562.6_1_X:2537498-2544672:+|nuORF	ENST00000430562.6_1_X:2537498-2544672:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.6358642578125	2	446.255977	890.497401	-0.94979	-0.00042385	-0.41455	-0.000185	-1.3643	-0.00060884	446.2558957795682	34.634	0.6101	34.634	34.306	34.917	0					31	21	2	0	0	0	0.34092	1	6921	6921		4.756	2.6963	1	152670			32663	10300	18975	18976	40001	40001					0.04777221962888234
PKPNPNPK	8	Unmodified	_PKPNPNPK_					0	0	0		ENST00000430562.6_1_X:2537498-2544672:+|nuORF;ENST00000414513.7_1_X:2536701-2544672:+|nuORF	ENST00000430562.6_1_X:2537498-2544672:+|nuORF	ENST00000430562.6_1_X:2537498-2544672:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.6357421875	2	446.255977	890.497401	-1.1375	-0.0005076	-0.16609	-7.4118E-05	-1.3036	-0.00058172	446.25607764302873	34.551	0.60747	34.626	34.326	34.933	0.075306					36	21	2	0	0	0	0.34092	1	6872	6872		4.756	0	1	162810			32664	10300	18975	18976	40002	40002					0.04777221962888234
PKPRGVGP	8	Unmodified	_PKPRGVGP_					0	0	0			REV__ENSG00000142347|ENST00000644032|MYO1F	REV__ENSG00000142347|ENST00000644032|MYO1F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.21307373046875	2	404.245412	806.476272	-0.16953	-6.8531E-05	0.31453	0.00012715	0.145	5.8617E-05	404.2454882888129	26.127	0.74627	26.105	25.635	26.381	-0.022238					44	26	3	0	0	0	0.34353	1	4194	4194		4.756	0	1	135440	+		32665	16114	18976	18977	40003	40003					0.06529256654050641
PKPRTPRTT	9	Unmodified	_PKPRTPRTT_					0	0	0			REV__nc|ENSG00000154175|Q7Z7G0-2|ABI3BP	REV__nc|ENSG00000154175|Q7Z7G0-2|ABI3BP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.768310546875	2	527.311815	1052.60908	0.30628	0.0001615	0.24415	0.00012875	0.55043	0.00029025	527.3119528813326	26.294	0.5633	26.255	26.069	26.632	-0.038671					28	19	2	0	0	0	0.25988	1	4332	4332		3.9444	0	1	167710	+		32666	16650	18977	18978	40004	40004					0.08487656320039605
PKQGKRLNF	9	Unmodified	_PKQGKRLNF_					0	0	0		nc|ENSG00000162739|Q96DU3-2|SLAMF6;ENSG00000162739|ENST00000368057|SLAMF6	nc|ENSG00000162739|Q96DU3-2|SLAMF6	nc|ENSG00000162739|Q96DU3-2|SLAMF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.274658203125	2	544.322183	1086.62981	0.34859	0.00018975	-1.2455	-0.00067795	-0.89689	-0.0004882	544.3212276278707	30.582	0.30989	30.609	30.394	30.704	0.027157					13	10	2	0	0	0	0.25526	1	5574	5574		7.9102	0	1	92596			32667	5609	18978	18979	40005	40005					0.08996246699712174
PKQGTHIIS	9	Unmodified	_PKQGTHIIS_					0	0	0			REV__ENSG00000159882|ENST00000429154|ZNF230	REV__ENSG00000159882|ENST00000429154|ZNF230	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.3182067871094	2	490.779816	979.545079	0.45298	0.00022231	-0.067204	-3.2982E-05	0.38577	0.00018933	490.77954220190026	20.738	0.26202	20.738	20.65	20.912	0					11	8	2	0	0	0	0.26068	1	2643	2643		3.2813	1.4371	1	30513	+		32668	16870	18979	18980	40006	40006					0.054488761630864246
PKQHFLWVL	9	Unmodified	_PKQHFLWVL_					0	0	0			REV__ENST00000471365.1_1_10:38658087-38667032:+|nuORF	REV__ENST00000471365.1_1_10:38658087-38667032:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3377075195312	2	584.337301	1166.66005	0.073077	4.2702E-05	-0.14313	-8.3639E-05	-0.070057	-4.0937E-05	584.3372066383284	17.755	0.42558	17.637	17.414	17.84	-0.11739					36	14	3	0	0	0	0.35512	1	1695	1695		0.6015	0	1	121600	+		32669	15553	18980	18981	40007	40007					0.08338605364883733
PKQHFLWVL	9	Unmodified	_PKQHFLWVL_					0	0	0			REV__ENST00000471365.1_1_10:38658087-38667032:+|nuORF	REV__ENST00000471365.1_1_10:38658087-38667032:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	584.337301	1166.66005	0.2694	0.00015742	-0.64706	-0.0003781	-0.37765	-0.00022068	584.3368509203517	17.547	0.50603	17.547	17.296	17.802	0	-0.059234	-0.00026086	NaN	0.6015	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105580	+		32670	15553	18980	18981							0.08338605364883733
PKQHFLWVL	9	Unmodified	_PKQHFLWVL_					0	0	0			REV__ENST00000471365.1_1_10:38658087-38667032:+|nuORF	REV__ENST00000471365.1_1_10:38658087-38667032:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	584.337301	1166.66005	0.073077	4.2702E-05	-0.14313	-8.3639E-05	-0.070057	-4.0937E-05	584.3372066383284	17.755	0.42558	17.637	17.414	17.84	-0.11739	0.030885	0.00032806	NaN	0.6015	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121600	+		32671	15553	18980	18981							0.08338605364883733
PKQKKFFP	8	Unmodified	_PKQKKFFP_					0	0	0			REV__ENST00000553521.5_2_14:70238190-70238250:+|nuORF	REV__ENST00000553521.5_2_14:70238190-70238250:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.3054504394531	2	510.30547	1018.59639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.61	1	119.59	119.09	120.09	-0.024361								0	0	0	0.38004	1	30875	30875		0.69038	0	1		+		32672	22226	18981	18982	40008	40008					0.08783244927803935
PKQQCGTGP	9	Unmodified	_PKQQCGTGP_					0	0	0		ENST00000543042.5_1_11:72091398-72145518:-|nuORF	ENST00000543042.5_1_11:72091398-72145518:-|nuORF	ENST00000543042.5_1_11:72091398-72145518:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7642822265625	2	458.221277	914.428001	-0.23748	-0.00010882	0.39273	0.00017996	0.15526	7.1143E-05	458.221466764983	13.868	0.25189	13.868	13.74	13.992	0					14	8	2	0	0	0	0.25938	1	518	518		4.3292	1.7518	1	29377			32673	11739	18982	18983	40009	40009					-0.03263605048164209
PKRDETAL	8	Unmodified	_PKRDETAL_					0	0	0		nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	nc|ENSG00000185359|O14964-2|HGS	nc|ENSG00000185359|O14964-2|HGS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.263916015625	2	465.256174	928.497795	-0.18332	-8.5293E-05	-0.12618	-5.8704E-05	-0.3095	-0.000144	465.25606985297156	19.438	0.44551	19.438	19.267	19.713	0					21	15	2	0	0	0	0.34313	1	2241	2241		6.7232	6.7232	1	38088			32674	7528	18983	18984	40010	40010					0.030685968920693085
PKRDETAL	8	Unmodified	_PKRDETAL_					0	0	0		nc|ENSG00000185359|O14964-2|HGS;ENSG00000185359|ENST00000329138|HGS	nc|ENSG00000185359|O14964-2|HGS	nc|ENSG00000185359|O14964-2|HGS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.263671875	2	465.256174	928.497795	-0.029571	-1.3758E-05	-0.92428	-0.00043003	-0.95385	-0.00044378	465.25573010958425	19.625	0.41876	19.509	19.311	19.729	-0.11592					21	13	2	0	0	0	0.34247	1	2278	2278		8.5933	0	1	34312			32675	7528	18983	18984	40011	40011					0.030685968920693085
PKRDKCGME	9	Unmodified	_PKRDKCGME_					0	0	0		ENST00000517637.2_1_11:67007786-67011067:+|nuORF	ENST00000517637.2_1_11:67007786-67011067:+|nuORF	ENST00000517637.2_1_11:67007786-67011067:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2562866210938	2	532.254794	1062.49503	0.73501	0.00039121	0.76287	0.00040604	1.4979	0.00079725	532.2549371571274	84.528	0.70747	84.528	84.163	84.871	0					67	26	3	0	0	0	0.29638	1	22202	22202		9.3831	0.035688	1	564220			32676	11440	18984	18985	40012	40012					-0.03371317828714382
PKRDQDAM	8	Unmodified	_PKRDQDAM_					0	0	0			REV__ENST00000265393.10_1_7:27779801-27779852:+|nuORF	REV__ENST00000265393.10_1_7:27779801-27779852:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2672424316406	2	480.732009	959.449465	0.032385	1.5568E-05	0.067267	3.2337E-05	0.099651	4.7906E-05	480.73227584027336	23.674	0.72243	23.674	23.362	24.085	0					39	24	2	0	0	0	0.33993	1	3469	3469		16.942	3.0362	1	57051	+		32677	19651	18985	18986	40013	40013					-0.03188220019455912
PKRDQDAM	8	Unmodified	_PKRDQDAM_					0	0	0			REV__ENST00000265393.10_1_7:27779801-27779852:+|nuORF	REV__ENST00000265393.10_1_7:27779801-27779852:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2670593261719	2	480.732009	959.449465	0.14923	7.174E-05	-0.54766	-0.00026328	-0.39843	-0.00019154	480.73221894661395	23.671	0.77004	23.598	23.285	24.055	-0.072559					36	26	2	0	0	0	0.34167	1	3559	3559		11.64	3.047	1	44978	+		32678	19651	18985	18986	40014	40014					-0.03188220019455912
PKRDQDAM	8	Unmodified	_PKRDQDAM_					0	0	0			REV__ENST00000265393.10_1_7:27779801-27779852:+|nuORF	REV__ENST00000265393.10_1_7:27779801-27779852:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2669982910156	2	480.732009	959.449465	0.29855	0.00014352	-0.12814	-6.1599E-05	0.17041	8.1922E-05	480.73218067212434	23.671	1.196	23.632	23.311	24.507	-0.038927					58	41	2	0	0	0	0.33993	1	3547	3547		16.942	7.5949	1	52111	+		32679	19651	18985	18986	40015	40015					-0.03188220019455912
PKRIFHNN	8	Unmodified	_PKRIFHNN_					0	0	0		ENSG00000277932|ENST00000610445|OR52E5	ENSG00000277932|ENST00000610445|OR52E5	ENSG00000277932|ENST00000610445|OR52E5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2413940429688	2	513.2856	1024.55665	0.16197	8.3135E-05	-2.0926	-0.0010741	-1.9307	-0.00099098	513.7854225896198	23.72	0.28898	23.648	23.563	23.852	-0.072559					12	9	2	0	0	0	0.344	1	3531	3531		2.5775	0.27475	1	27346			32680	8736	18986	18987	40016	40016					0.045351179770932504
PKRIRKAAKRE	11	Unmodified	_PKRIRKAAKRE_					0	0	0		ENSG00000171163|ENST00000306601|ZNF692;nc|ENSG00000171163|Q9BU19-5|ZNF692;nc|ENSG00000171163|Q9BU19-3|ZNF692;nc|ENSG00000171163|Q9BU19-2|ZNF692;ENST00000470787.6_1_1:249144674-249149911:-|nuORF;ENST00000533927.5_1_1:249144411-249149911:-|nuORF	ENSG00000171163|ENST00000306601|ZNF692	ENSG00000171163|ENST00000306601|ZNF692	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.6246337890625	3	451.624755	1351.85244	0.30535	0.00013791	-1.5776	-0.00071248	-1.2722	-0.00057458	451.6245861808966	40.213	1.0906	40.312	39.977	41.068	0.099407					149	39	5	0	0	0	0.47545	1	8509	8509		1.3296	0	1	1397000			32681	6520	18987	18988	40017	40017					0.19058320764906966
PKRKNTWN	8	Unmodified	_PKRKNTWN_					0	0	0		ENSG00000267710|ENST00000649256|EDDM13	ENSG00000267710|ENST00000649256|EDDM13	ENSG00000267710|ENST00000649256|EDDM13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.800537109375	2	522.290882	1042.56721	0.14776	7.7172E-05	0.25948	0.00013552	0.40723	0.00021269	522.2913622882672	14.746	0.57276	14.642	14.338	14.91	-0.10466					59	19	5	0	0	0	0.34247	1	731	731		8.5933	3.3626	1	245540			32682	8683	18988	18989	40018	40018					0.04763100631521411
PKRLSTSPL	9	Unmodified	_PKRLSTSPL_					0	0	0		ENST00000474275.5_1_3:169866995-169890358:-|nuORF	ENST00000474275.5_1_3:169866995-169890358:-|nuORF	ENST00000474275.5_1_3:169866995-169890358:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.295654296875	2	499.803291	997.59203	0.15129	7.5615E-05	1.1345	0.00056704	1.2858	0.00064266	499.80321142169083	15.602	1.2319	15.492	14.847	16.079	-0.10981					58	42	2	0	0	0	0.25323	1	1251	1251		10.074	2.1638	1	60772			32683	10919	18989	18990	40019	40019					0.09313735714226823
PKRQSSPAPK	10	Unmodified	_PKRQSSPAPK_					0	0	0			REV__ENSG00000011260|ENST00000225298|UTP18	REV__ENSG00000011260|ENST00000225298|UTP18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7875366210938	2	548.317097	1094.61964	0.29763	0.0001632	-0.16215	-8.8908E-05	0.13549	7.4289E-05	548.3165715817192	15.204	0.35515	15.094	14.93	15.285	-0.10982					21	12	2	0	0	0	0.32072	1	943	943		2.9952	0	1	54227	+		32684	13427	18990	18991	40020	40020					0.07611638974458401
PKSALRDW	8	Unmodified	_PKSALRDW_					0	0	0		ENSG00000157227|ENST00000311852|MMP14	ENSG00000157227|ENST00000311852|MMP14	ENSG00000157227|ENST00000311852|MMP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.26519775390625	2	486.766709	971.518865	0.34627	0.00016855	-0.12439	-6.0551E-05	0.22188	0.000108	486.7667747576556	35.748	0.60297	35.83	35.54	36.143	0.082355					31	21	2	0	0	0	0.34272	1	7192	7192		4.3292	0	1	227010			32685	5292	18991	18992	40021	40021					0.03196606991605222
PKSAPRHH	8	Unmodified	_PKSAPRHH_					0	0	0			REV__ENST00000380171.7_2_2:27438203-27438368:+|nuORF	REV__ENST00000380171.7_2_2:27438203-27438368:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2639465332031	2	465.256843	928.499132	0.19463	9.0555E-05	-2.362	-0.0010989	-2.1674	-0.0010084	465.2556604036882	19.519	0.4513	19.463	19.227	19.678	-0.055693					26	15	2	0	0	0	0.4419	1	2239	2239		8.5933	0	1	37964	+		32686	20543	18992	18993	40022	40022					0.03202275771513996
PKSEHKAVL	9	Unmodified	_PKSEHKAVL_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;ENST00000578653.1_1_17:27849339-27857712:+|nuORF;nc|ENSG00000160551|Q7L7X3-3|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.3484191894531	2	504.795466	1007.57638	0.60285	0.00030432	0.14199	7.1676E-05	0.74484	0.00037599	504.7954450306839	32.419	0.49467	32.419	32.225	32.72	0					30	17	2	0	0	0	0.23784	1	6233	6233		19.257	4.4187	1	164300			32687	5469	18993	18994	40023	40023					0.0728944919718515
PKSEHKAVL	9	Unmodified	_PKSEHKAVL_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;ENST00000578653.1_1_17:27849339-27857712:+|nuORF;nc|ENSG00000160551|Q7L7X3-3|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.3482360839844	2	504.795466	1007.57638	0.3521	0.00017774	0.21201	0.00010702	0.56412	0.00028476	504.79545031522053	32.317	0.46235	32.371	32.167	32.63	0.054375					40	16	4	0	0	0	0.23784	1	6203	6203		19.257	4.4187	1	174900			32688	5469	18993	18994	40024	40024					0.0728944919718515
PKSGPSTKP	9	Unmodified	_PKSGPSTKP_					0	0	0		ENST00000468415.6_1_3:59035346-59035502:-|nuORF	ENST00000468415.6_1_3:59035346-59035502:-|nuORF	ENST00000468415.6_1_3:59035346-59035502:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2265625	2	449.753267	897.491981	-0.034056	-1.5317E-05	0.048569	2.1844E-05	0.014513	6.5273E-06	449.753183706361	15.934	0.44117	15.82	15.605	16.047	-0.11434					19	14	2	0	0	0	0.26031	1	1148	1148		3.5965	0	1	18594			32689	10837	18994	18995	40025	40025					0.039134983804160584
PKSPLRLIAN	10	Unmodified	_PKSPLRLIAN_					0	0	0		nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.2771606445312	2	554.84549	1107.67643	0.54363	0.00030163	-0.49317	-0.00027363	0.050458	2.7996E-05	554.8449567115028	53.773	0.37797	53.773	53.568	53.946	0					23	13	2	0	0	0	0.30978	1	12734	12734		19.362	1.2156	1	186880			32690	12703	18995	18996	40026	40026					0.12689686530984545
PKSPVPTRS	9	Unmodified	_PKSPVPTRS_					0	0	0			REV__ENSG00000142039|ENST00000269967|CCDC97	REV__ENSG00000142039|ENST00000269967|CCDC97	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7798767089844	2	484.779816	967.545079	0.079946	3.8756E-05	0.66691	0.0003233	0.74685	0.00036206	484.7799051829907	16.29	1.0656	16.29	15.654	16.72	0					71	37	2	0	0	0	0.25843	1	1299	1299		5.7319	0	1	109480	+		32691	16098	18996	18997	40027	40027					0.060008761631024754
PKSRRGEIWQF	11	Unmodified	_PKSRRGEIWQF_					0	0	0		nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4;nc|ENSG00000136111|O60343-4|TBC1D4;nc|ENSG00000136111|O60343-5|TBC1D4	nc|ENSG00000136111|O60343-2|TBC1D4	nc|ENSG00000136111|O60343-2|TBC1D4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.27679443359375	3	468.589599	1402.74697	0.15833	7.419E-05	1.9724	0.00092427	2.1308	0.00099846	468.5904289800624	30.508	0.36711	30.536	30.298	30.665	0.027948					20	12	2	0	0	0	0.3325	1	5523	5523		4.1166	1.2733	1	82186			32692	3942	18997	18998	40028	40028					0.06170359848647422
PKSSKTELFKE	11	Unmodified	_PKSSKTELFKE_					0	0	0		nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:50057675-50130728:+|nuORF	nc|ENSG00000151883|Q8N3A8-2|PARP8	nc|ENSG00000151883|Q8N3A8-2|PARP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.3563232421875	2	647.356085	1292.69762	0.29928	0.00019374	0.03648	2.3616E-05	0.33576	0.00021736	647.3560626157708	40.914	0.86687	40.914	40.604	41.471	0					104	31	5	0	0	0	0.30623	1	8781	8781		31.636	5.6384	1	4623000			32693	4990	18998	18999	40029	40029					0.06297607049168619
PKSSYCFY	8	Unmodified	_PKSSYCFY_					0	0	0			REV__ENST00000422797.5_1_2:109288812-109289630:+|nuORF	REV__ENST00000422797.5_1_2:109288812-109289630:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.78765869140625	2	497.720578	993.426604	0.29636	0.0001475	-0.86641	-0.00043123	-0.57006	-0.00028373	497.72019302378914	19.841	0.55243	19.841	19.493	20.045	0					32	19	2	0	0	0	0.34167	1	2395	2395		11.64	3.047	1	57692	+		32694	20872	18999	19000	40030	40030					-0.07037239136934659
PKTAISSQSKL	11	Unmodified	_PKTAISSQSKL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3383178710938	2	580.337695	1158.66084	0.308	0.00017874	-0.42978	-0.00024942	-0.12178	-7.0675E-05	580.3370782267117	91.563	0.79214	91.653	91.496	92.289	0.090668					77	52	2	0	0	0	0.44828	1	24340	24340		4.897	0.56777	1	197870			32695	638	19000	19001	40031	40031					0.08785355223290026
PKTAISSQSKL	11	Unmodified	_PKTAISSQSKL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3377075195312	2	580.337695	1158.66084	0.45617	0.00026473	-1.2639	-0.00073347	-0.80769	-0.00046873	580.3365467750687	91.675	0.73972	91.675	91.465	92.205	0.00046539					69	47	2	0	0	0	0.44828	1	24379	24379		4.897	0.56777	1	207040			32696	638	19000	19001	40032	40032					0.08785355223290026
PKTATSRLTA	10	Unmodified	_PKTATSRLTA_					0	0	0			REV__ENSG00000184956|ENST00000421673|MUC6	REV__ENSG00000184956|ENST00000421673|MUC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8116455078125	2	523.303655	1044.59276	0.60237	0.00031522	-0.2658	-0.0001391	0.33657	0.00017613	523.3033881975516	86.691	0.56169	86.685	86.433	86.995	-0.0056229					30	21	2	0	0	0	0.31323	1	22741	22741		15.248	15.248	1	105410	+		32697	18344	19001	19002	40033	40033					0.07224530363282611
PKTCLKLAR	9	Unmodified	_PKTCLKLAR_					0	0	0			REV__ENSG00000141639|ENST00000400384|MAPK4	REV__ENSG00000141639|ENST00000400384|MAPK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7722778320312	2	515.315512	1028.61647	-0.24557	-0.00012655	1.266	0.00065241	1.0205	0.00052586	515.3164506760515	35.37	0.65861	35.445	35.017	35.675	0.075306					33	23	2	0	0	0	0.24688	1	7086	7086		10.074	0	1	281480	+		32698	16089	19002	19003	40034	40034					0.10330672596091972
PKTIRWTIP	9	Unmodified	_PKTIRWTIP_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3330078125	2	556.334759	1110.65496	0.24427	0.0001359	-4.4144	-0.0024559	-4.1702	-0.00232	556.332694691663	35.456	0.68296	35.532	35.21	35.893	0.075306					56	24	3	0	0	0	0.14786	1	7121	7121		31.268	5.869	1	583370			32699	6886	19003	19004	40035	40035					0.10406301502280257
PKTKHFHYL	9	Unmodified	_PKTKHFHYL_					0	0	0			REV__ENST00000453424.6_1_10:45952026-45952551:-|nuORF	REV__ENST00000453424.6_1_10:45952026-45952551:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.813232421875	2	585.824558	1169.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.917	1	94.915	94.415	95.415	-0.0020142								0	0	0	0.2575	1	25338	25338		3.9444	0	1		+		32700	21141	19004	19005	40036	40036					0.05653130842460996
PKTLRVWKM	9	Unmodified	_PKTLRVWKM_					0	0	0			REV__nc|ENSG00000145868|Q6PIJ6-3|FBXO38	REV__nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8446044921875	2	579.844436	1157.67432	0.44308	0.00025692	0.11496	6.6661E-05	0.55804	0.00032358	579.8442528514283	92.459	0.68902	92.459	92.205	92.894	0.00046539					96	48	3	0	0	0	0.33276	1	24597	24597		3.9444	3.9444	1	414130	+		32701	16315	19005	19006	40037	40037					0.10178934521513838
PKTLRVWKM	9	Unmodified	_PKTLRVWKM_					0	0	0			REV__nc|ENSG00000145868|Q6PIJ6-3|FBXO38	REV__nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	579.844436	1157.67432	0.44308	0.00025692	0.11496	6.6661E-05	0.55804	0.00032358	579.8442528514283	92.459	0.68902	92.459	92.205	92.894	0.00046539	-0.042931	-9.6558E-05	NaN	3.9444	96	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414130	+		32702	16315	19005	19006							0.10178934521513838
PKTPLGKRDIV	11	Unmodified	_PKTPLGKRDIV_					0	0	0		ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.3554077148438	2	612.377155	1222.73976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.688	1	82.668	82.168	83.168	-0.020584								0	0	0	0.37609	1	21582	21582		2.4985	0.43874	1				32703	4828	19006	19007	40038	40038					0.13729627248221732
PKTQKEKPLV	10	Unmodified	_PKTQKEKPLV_					0	0	0			REV__ENSG00000148843|ENST00000369797|PDCD11	REV__ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.0116577148438	2	584.358431	1166.70231	0.050255	2.9367E-05	-2.3147	-0.0013526	-2.2645	-0.0013233	584.3569379238451	101.83	0.22002	101.86	101.74	101.96	0.027214					33	30	2	0	0	0	0.32132	1	27164	27164		1.4819	0	1	59515	+		32704	16442	19007	19008	40039	40039					0.12562535982578993
PKTQKEKPLV	10	Unmodified	_PKTQKEKPLV_					0	0	0			REV__ENSG00000148843|ENST00000369797|PDCD11	REV__ENSG00000148843|ENST00000369797|PDCD11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	584.358431	1166.70231	-0.086502	-5.0548E-05	-2.5741	-0.0015042	-2.6606	-0.0015547	584.3568134325017	101.68	0.049568	101.68	101.64	101.69	0	-0.1155	0.00054827	NaN	1.4819	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35577	+		32705	16442	19007	19008							0.12562535982578993
PKTQKEKPLV	10	Unmodified	_PKTQKEKPLV_					0	0	0			REV__ENSG00000148843|ENST00000369797|PDCD11	REV__ENSG00000148843|ENST00000369797|PDCD11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	584.358431	1166.70231	0.28195	0.00016476	-3.2255	-0.0018849	-2.9436	-0.0017201	584.3564398938862	101.84	0.36317	101.84	101.54	101.9	-0.0054703	0.046186	-0.00021311	NaN	1.4819	73	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98447	+		32706	16442	19007	19008							0.12562535982578993
PKTRARKRP	9	Unmodified	_PKTRARKRP_					0	0	0		ENST00000534742.1_1_11:288335-288569:+|nuORF	ENST00000534742.1_1_11:288335-288569:+|nuORF	ENST00000534742.1_1_11:288335-288569:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.353759765625	2	555.354348	1108.69414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.03	1	112.04	111.54	112.54	0.0131								0	0	0	0.264	1	29164	29164		1.8442	0.36234	1				32707	11664	19008	19009	40040	40040					0.14414446576506634
PKTRELPPRQ	10	Unmodified	_PKTRELPPRQ_					0	0	0			REV__ENST00000573057.1_1_17:7495442-7495673:-|nuORF	REV__ENST00000573057.1_1_17:7495442-7495673:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.3748168945312	2	611.356754	1220.69895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.96	1	102.96	102.46	103.46	0								0	0	0	0.3726	1	27365	27365		5.2969	2.0156	1		+		32708	15406	19009	19010	40041	40041					0.09743285928584555
PKTRGDYK	8	Unmodified	_PKTRGDYK_					0	0	0			REV__ENST00000559475.5_1_15:40329218-40331146:-|nuORF	REV__ENST00000559475.5_1_15:40329218-40331146:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2560119628906	2	482.764166	963.513779	0.057269	2.7647E-05	-0.40933	-0.00019761	-0.35206	-0.00016996	482.76397201513424	18.94	1.0423	18.822	18.267	19.309	-0.11739					100	36	5	0	0	0	0.4354	1	2182	2182		10.824	0.67336	1	436340	+		32709	16027	19010	19011	40042	40042					0.030563031289943865
PKTRGSHL	8	Unmodified	_PKTRGSHL_					0	0	0		ENSG00000198173|ENST00000358047|FAM47C	ENSG00000198173|ENST00000358047|FAM47C	ENSG00000198173|ENST00000358047|FAM47C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2588806152344	2	448.259051	894.503549	0.23304	0.00010446	-0.28505	-0.00012777	-0.052006	-2.3312E-05	448.25888075525063	79.794	1.072	79.794	79.441	80.513	0					117	40	4	0	0	0	0.43302	2	20700	20700;20749		11.64	3.047	1	5919600			32710	8046	19011	19012	40043;40044	40043					0.05207740194430244
PKTRGSHL	8	Unmodified	_PKTRGSHL_					0	0	0		ENSG00000198173|ENST00000358047|FAM47C	ENSG00000198173|ENST00000358047|FAM47C	ENSG00000198173|ENST00000358047|FAM47C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.25927734375	2	448.259051	894.503549	0.19755	8.8555E-05	-0.21335	-9.5635E-05	-0.015793	-7.0795E-06	448.25890967884675	79.77	1.1023	79.831	79.44	80.543	0.061417					119	41	4	0	0	0	0.41758	4	20761	20627;20670;20714;20761		16.942	5.302	1	5880600			32711	8046	19011	19012	40045;40046;40047;40048	40048					0.05207740194430244
PKTRGSHL	8	Unmodified	_PKTRGSHL_					0	0	0		ENSG00000198173|ENST00000358047|FAM47C	ENSG00000198173|ENST00000358047|FAM47C	ENSG00000198173|ENST00000358047|FAM47C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.25897216796875	2	448.259051	894.503549	0.28557	0.00012801	-0.29139	-0.00013062	-0.0058187	-2.6083E-06	448.25888225530827	79.849	1.0832	79.82	79.418	80.502	-0.028923					102	38	4	0	0	0	0.43302	3	20687	20687;20738;20789		11.64	3.7301	1	6960500			32712	8046	19011	19012	40049;40050;40051	40049					0.05207740194430244
PKTSHFLPF	9	Unmodified	_PKTSHFLPF_					0	0	0			REV__SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|39|1|anti-sense	REV__SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|39|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.995361328125	2	537.292559	1072.57057	0.26488	0.00014232	4.2952	0.0023078	4.5601	0.0024501	537.7971581274627	95.953	0.041397	96.03	95.998	96.04	0.077408					4	2	2	0	0	0	0.25938	1	25637	25637		1.8442	0	1	44227	+		32713	23316	19012	19013	40052	40052					0.037183506854944426
PKTSLRKTD	9	Unmodified	_PKTSLRKTD_					0	0	0		nc|ENSG00000178965|Q5RHP9-2|ERICH3;ENST00000433746.2_1_1:75036803-75045091:-|nuORF;ENSG00000178965|ENST00000326665|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3037109375	2	523.303655	1044.59276	0.45849	0.00023993	-0.11285	-5.9054E-05	0.34564	0.00018088	523.3034012000127	81.421	1.2615	81.421	80.707	81.968	0					159	57	5	0	0	0	0.3208	1	21285	21285		5.7319	0	1	1515200			32714	7090	19013	19014	40053	40053					0.07224530363282611
PKTSLRKTD	9	Unmodified	_PKTSLRKTD_					0	0	0		nc|ENSG00000178965|Q5RHP9-2|ERICH3;ENST00000433746.2_1_1:75036803-75045091:-|nuORF;ENSG00000178965|ENST00000326665|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3036499023438	2	523.303655	1044.59276	0.35197	0.00018419	-0.31839	-0.00016661	0.033581	1.7573E-05	523.3033075822935	76.328	1.651	76.381	75.944	77.595	0.053413					205	58	5	0	0	0	0.3208	1	19721	19721		5.7319	0.43497	1	2738400			32715	7090	19013	19014	40054	40054					0.07224530363282611
PKTSLRKTD	9	Unmodified	_PKTSLRKTD_					0	0	0		nc|ENSG00000178965|Q5RHP9-2|ERICH3;ENST00000433746.2_1_1:75036803-75045091:-|nuORF;ENSG00000178965|ENST00000326665|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.303466796875	2	523.303655	1044.59276	0.15014	7.857E-05	0.16105	8.428E-05	0.3112	0.00016285	523.3035534105047	81.35	1.3643	81.419	80.55	81.915	0.068993					156	62	4	0	0	0	0.3208	1	21240	21240		5.7319	0	1	1894300			32716	7090	19013	19014	40055	40055					0.07224530363282611
PKTTTVVLS	9	Unmodified	_PKTTTVVLS_					0	0	0			REV__ENST00000506323.1_1_4:101395197-101439143:-|nuORF	REV__ENST00000506323.1_1_4:101395197-101439143:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.2668151855469	2	473.2844	944.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.407	1	35.483	34.983	35.983	0.075306								0	0	0	0.2505	1	7087	7087		6.2058	0	1		+		32717	17116	19014	19015	40056	40056					0.079752247287729
PKTVDVPAS	9	Unmodified	_PKTVDVPAS_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2644348144531	2	457.2531	912.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.676	1	73.728	73.228	74.228	0.052361								0	0	0	0.2489	1	18834	18834		6.7232	0	1				32718	706	19015	19016	40057	40057					0.03190078660566087
PKTWKKPKDR	10	Unmodified	_PKTWKKPKDR_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3;ENST00000374933.3_1_1:21219982-21267875:-|nuORF	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.384033203125	2	642.382771	1282.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102	1	102.01	101.51	102.51	0.016685								0	0	0	0.37807	1	27181	27181		2.9952	0.26005	1				32719	1038	19016	19017	40058	40058					0.12092449342367217
PKVKMAKAVM	10	Unmodified	_PKVKMAKAVM_					0	0	0			REV__ENST00000343470.8_2_4:4281460-4283574:-|nuORF	REV__ENST00000343470.8_2_4:4281460-4283574:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8052368164062	2	551.827398	1101.64024	-0.051011	-2.8149E-05	-1.254	-0.00069198	-1.305	-0.00072013	551.8266652064615	12.904	0.23056	12.836	12.734	12.965	-0.067496					13	7	2	0	0	0	0.31926	1	267	267		5.7319	0	1	51091	+		32720	20133	19017	19018	40059	40059					0.09348770038263865
PKVPWFPR	8	Unmodified	_PKVPWFPR_					0	0	0		nc|ENSG00000180176|P07101-6|TH;nc|ENSG00000180176|P07101-5|TH;TH|p.Q504Rfs*21|1|0.22|ENSG00000180176|chr11:2164310-2164310|G/-|frameshift_variant;ENSG00000180176|ENST00000352909|TH;nc|ENSG00000180176|P07101-4|TH;nc|ENSG00000180176|P07101-2|TH;nc|ENSG00000180176|P07101|TH;ENST00000469226.1_1_11:2189094-2189913:-|nuORF;ENST00000381168.7_1_11:2187868-2190906:-|nuORF	nc|ENSG00000180176|P07101-6|TH	nc|ENSG00000180176|P07101-6|TH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7902221679688	2	513.797812	1025.58107	-0.097545	-5.0118E-05	4.3212	0.0022202	4.2236	0.0021701	513.7996821525601	14.142	0.28237	14.038	13.903	14.185	-0.10466					15	9	3	0	0	0	0.4419	1	654	654		8.5933	1.304	1	111310			32721	7168	19018	19019	40060	40060					0.06930378130596182
PKVREKEL	8	Unmodified	_PKVREKEL_					0	0	0			REV__ENST00000391835.1_1_19:50380463-50380886:-|nuORF	REV__ENST00000391835.1_1_19:50380463-50380886:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.8040466308594	2	499.803291	997.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.221	1	12.124	11.624	12.624	-0.096607								0	0	0	0.36623	1	64	64		7.2892	0	1		+		32722	20585	19019	19020	40061	40061					0.09313735714226823
PKWVPVLGELQ	11	Unmodified	_PKWVPVLGELQ_					0	0	0		ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3690185546875	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.68	1	116.7	116.2	117.2	0.020988								0	0	0	0.38114	1	30268	30268		1.3295	0.80477	1				32723	7163	19020	19021	40062	40062					0.09618822499669477
PLAAELLMIF	10	Unmodified	_PLAAELLMIF_					0	0	0			REV__ENSG00000153936|ENST00000370550|HS2ST1;REV__nc|ENSG00000153936|Q7LGA3-2|HS2ST1	REV__nc|ENSG00000153936|Q7LGA3-2|HS2ST1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.3212890625	2	559.319928	1116.6253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.269	1	90.36	89.86	90.86	0.090668								0	0	0	0.3664	1	23912	23912		7.9102	3.5809	1		+		32724	16638;23034	19021	19022	40063	40063					0.07165601441920444
PLAARTRTA	9	Unmodified	_PLAARTRTA_					0	0	0			REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.785400390625	2	478.785433	955.556313	0.40854	0.0001956	-0.50713	-0.00024281	-0.098591	-4.7204E-05	478.78518937219616	84.54	0.71422	84.54	84.205	84.92	0					49	26	2	0	0	0	0.28674	1	22170	22170		10.824	0	1	468310	+		32725	20050	19022	19023	40064	40064					0.0767569825721921
PLAARTRTA	9	Unmodified	_PLAARTRTA_					0	0	0			REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7852783203125	2	478.785433	955.556313	0.32123	0.0001538	-0.043618	-2.0884E-05	0.27761	0.00013291	478.78538045672474	82.087	1.6557	82.063	81.583	83.239	-0.024048					149	66	4	0	0	0	0.25314	2	21363	21336;21363		15.847	0	1	5519000	+		32726	20050	19022	19023	40065;40066	40066					0.0767569825721921
PLAARTRTA	9	Unmodified	_PLAARTRTA_					0	0	0			REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7855529785156	2	478.785433	955.556313	0.46925	0.00022467	-0.51561	-0.00024686	-0.046356	-2.2195E-05	478.7851790889749	84.425	1.0109	84.41	84.183	85.194	-0.015099					65	41	2	0	0	0	0.33508	1	22122	22122		3.5965	0	1	451480	+		32727	20050	19022	19023	40067	40067					0.0767569825721921
PLAARTRTA	9	Unmodified	_PLAARTRTA_					0	0	0			REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	REV__ENST00000332707.9_1_12:64798450-64798576:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	478.785433	955.556313	0.47805	0.00022888	-0.67987	-0.00032551	-0.20181	-9.6626E-05	478.7851089278384	84.426	0.87066	84.503	84.123	84.994	0.077095	0.018843	-0.00011465	NaN	3.5965	57	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336890	+		32728	20050	19022	19023							0.0767569825721921
PLAATNPSL	9	Unmodified	_PLAATNPSL_					0	0	0			REV__ENST00000579243.1_1_17:72916650-72919343:-|nuORF	REV__ENST00000579243.1_1_17:72916650-72919343:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.2841491699219	2	442.247818	882.481082	0.00206	9.1105E-07	-0.0029235	-1.2929E-06	-0.00086343	-3.8185E-07	442.2477310035067	42.746	0.3824	42.831	42.648	43.03	0.085197					19	13	2	0	0	0	0.23784	1	9380	9380		5.7319	0	1	168050	+		32729	22473	19023	19024	40068	40068					0.0351409600613124
PLADKRNRPK	10	Unmodified	_PLADKRNRPK_					0	0	0			REV__ENSG00000156509|ENST00000428847|FBXO43	REV__ENSG00000156509|ENST00000428847|FBXO43	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8570556640625	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.528	1	95.524	95.024	96.024	-0.0038147								0	0	0	0.37739	1	25519	25519		3.2813	0.28607	1		+		32730	16750	19024	19025	40069	40069					0.11018705648439209
PLAEVAWVGRL	11	Unmodified	_PLAEVAWVGRL_					0	0	0			REV__ENST00000473949.5_1_1:228270546-228284200:+|nuORF	REV__ENST00000473949.5_1_1:228270546-228284200:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.86944580078125	3	404.236274	1209.68699	-0.072119	-2.9153E-05	-0.90942	-0.00036762	-0.98154	-0.00039678	404.2357945675132	44.207	0.63221	44.282	44.148	44.78	0.075047					32	22	2	0	0	0	0.32824	1	9822	9822		12.856	12.856	1	204060	+		32731	21387	19025	19026	40070	40070					0.09053669185436775
PLAFSENGILR	11	Unmodified	_PLAFSENGILR_					0	0	0			REV__ENST00000472871.1_1_13:95117885-95118946:-|nuORF	REV__ENST00000472871.1_1_13:95117885-95118946:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8377685546875	2	608.837862	1215.66117	0.2454	0.00014941	-0.2651	-0.0001614	-0.019691	-1.1989E-05	608.8375255550451	105.8	0.92616	105.8	105.37	106.29	0.0031738					349	133	3	0	0	0	0.44828	1	28033	28033		4.897	1.6157	1	1060400	+		32732	13881	19026	19027	40071	40071					0.061967749431460106
PLAGQPLVL	9	Unmodified	_PLAGQPLVL_					0	0	0			REV__nc|ENSG00000172059|O14901-2|KLF11	REV__nc|ENSG00000172059|O14901-2|KLF11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2841491699219	2	454.284203	906.553853	0.15085	6.853E-05	0.17143	7.7878E-05	0.32228	0.00014641	454.28414712729165	68.132	1.6463	68.132	67.809	69.455	0					125	59	4	0	0	0	0.155	2	17105	17105;17150		30.225	30.225	1	1431000	+		32733	17690	19027	19028	40072;40073	40072					0.0968384979955772
PLAGQPLVL	9	Unmodified	_PLAGQPLVL_					0	0	0			REV__nc|ENSG00000172059|O14901-2|KLF11	REV__nc|ENSG00000172059|O14901-2|KLF11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.28411865234375	2	454.284203	906.553853	0.19502	8.8594E-05	0.0616	2.7984E-05	0.25662	0.00011658	454.28415418217355	68.114	1.6559	68.096	67.837	69.493	-0.017769					125	58	3	0	0	0	0.155	2	17097	17097;17147		30.225	9.3536	1	1284100	+		32734	17690	19027	19028	40074;40075	40074					0.0968384979955772
PLAHSLPLF	9	Unmodified	_PLAHSLPLF_					0	0	0		ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1	ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.316162109375	2	497.789653	993.564752	0.60967	0.00030349	0.12104	6.0253E-05	0.73071	0.00036374	497.78963642840915	60.535	0.56403	60.535	60.228	60.792	0					37	20	2	0	0	0	0.21137	1	14754	14754		18.135	1.1927	1	1038300			32735	6510	19028	19029	40076	40076					0.06771252173859921
PLAHSLPLF	9	Unmodified	_PLAHSLPLF_					0	0	0		ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1	ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	497.789653	993.564752	0.70763	0.00035225	-5.5477	-0.0027616	-4.84	-0.0024093	497.7881231313938	60.818	0.10282	60.809	60.759	60.862	-0.0094528	0.19013	-0.005489	NaN	18.135	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124990			32736	6510	19028	19029							0.06771252173859921
PLAILINI	8	Unmodified	_PLAILINI_					0	0	0		nc|ENSG00000163485|P30542-2|ADORA1;ENSG00000163485|ENST00000337894|ADORA1	nc|ENSG00000163485|P30542-2|ADORA1	nc|ENSG00000163485|P30542-2|ADORA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.9329528808594	2	433.789121	865.56369	0.071059	3.0825E-05	-0.11684	-5.0685E-05	-0.045783	-1.986E-05	433.7891735331527	87.219	0.10774	87.219	87.17	87.278	0					5	4	2	0	0	0	0.344	1	22989	22989		2.5775	0	1	29361			32737	5688	19029	19030	40077	40077					0.12553037804923406
PLAKNLLQL	9	Unmodified	_PLAKNLLQL_					0	0	0			REV__ENST00000484611.7_1_X:200851-207455:+|nuORF	REV__ENST00000484611.7_1_X:200851-207455:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7976989746094	2	505.32386	1008.63317	0.35343	0.00017859	-0.73765	-0.00037275	-0.38422	-0.00019416	505.3235343008133	68.717	0.70114	68.789	68.563	69.264	0.071938					62	25	3	0	0	0	0.18943	1	17457	17457		30.225	8.4782	1	383670	+		32738	18195	19030	19031	40078	40078					0.12919496753715976
PLAKNLLQL	9	Unmodified	_PLAKNLLQL_					0	0	0			REV__ENST00000484611.7_1_X:200851-207455:+|nuORF	REV__ENST00000484611.7_1_X:200851-207455:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.7977600097656	2	505.32386	1008.63317	0.3523	0.00017803	-0.91814	-0.00046396	-0.56584	-0.00028593	505.3234976836426	68.824	0.81051	68.805	68.516	69.327	-0.01915					60	28	3	0	0	0	0.18943	1	17475	17475		23.148	1.4018	1	320280	+		32739	18195	19030	19031	40079	40079					0.12919496753715976
PLALLQRPL	9	Unmodified	_PLALLQRPL_					0	0	0		ENST00000449707.5_1_2:219507052-219507328:-|nuORF	ENST00000449707.5_1_2:219507052-219507328:-|nuORF	ENST00000449707.5_1_2:219507052-219507328:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.25482177734375	2	510.831852	1019.64915	0.29139	0.00014885	-0.28525	-0.00014572	0.0061381	3.1355E-06	510.8318813863771	67.29	0.45439	67.29	67.106	67.561	0					25	15	2	0	0	0	0.19839	1	16910	16910		28.487	0	1	143860			32740	10632	19031	19032	40080	40080					0.14011202990604943
PLALLQRPL	9	Unmodified	_PLALLQRPL_					0	0	0		ENST00000449707.5_1_2:219507052-219507328:-|nuORF	ENST00000449707.5_1_2:219507052-219507328:-|nuORF	ENST00000449707.5_1_2:219507052-219507328:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2547912597656	2	510.831852	1019.64915	0.093368	4.7695E-05	0.40596	0.00020738	0.49933	0.00025507	510.8322775490435	67.345	0.58565	67.329	66.921	67.506	-0.016296					28	19	2	0	0	0	0.19839	1	16910	16910		28.487	0	1	172370			32741	10632	19031	19032	40081	40081					0.14011202990604943
PLALLVTL	8	Unmodified	_PLALLVTL_					0	0	0			REV__nc|ENSG00000268758|Q86SQ3-2|ADGRE4P	REV__nc|ENSG00000268758|Q86SQ3-2|ADGRE4P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.2834167480469	2	420.283672	838.552791	0.22635	9.5132E-05	-0.27647	-0.0001162	-0.050117	-2.1063E-05	420.28339441066606	83.379	0.76682	83.379	83.001	83.768	0					59	28	3	0	0	0	0.2157	1	21827	21827		40.449	0	1	447990	+		32742	23232	19032	19033	40082	40082					0.12705635430654638
PLALLVTL	8	Unmodified	_PLALLVTL_					0	0	0			REV__nc|ENSG00000268758|Q86SQ3-2|ADGRE4P	REV__nc|ENSG00000268758|Q86SQ3-2|ADGRE4P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.2835388183594	2	420.283672	838.552791	0.21809	9.1659E-05	-0.32987	-0.00013864	-0.11178	-4.698E-05	420.28341281819183	83.264	0.73129	83.337	83.003	83.734	0.073097					45	27	2	0	0	0	0.16192	1	21737	21737		49.669	0	1	523920	+		32743	23232	19032	19033	40083	40083					0.12705635430654638
PLALLVTL	8	Unmodified	_PLALLVTL_					0	0	0			REV__nc|ENSG00000268758|Q86SQ3-2|ADGRE4P	REV__nc|ENSG00000268758|Q86SQ3-2|ADGRE4P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2835693359375	2	420.283672	838.552791	0.28185	0.00011846	-0.20174	-8.4786E-05	0.080116	3.3672E-05	420.2833920236205	83.267	0.78008	83.246	83.053	83.833	-0.020584					45	32	2	0	0	0	0.2157	1	21816	21816		40.449	0	1	495200	+		32744	23232	19032	19033	40084	40084					0.12705635430654638
PLALQRVF	8	Unmodified	_PLALQRVF_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2895202636719	2	472.28982	942.565087	0.48429	0.00022873	-0.78953	-0.00037288	-0.30523	-0.00014416	472.2893307501753	54.735	0.82781	54.798	54.353	55.181	0.063202					49	30	3	0	0	0	0.28861	1	13034	13034		32.117	1.4804	1	494890			32745	7691	19033	19034	40085	40085					0.09150671893701201
PLALSPLE	8	Unmodified	_PLALSPLE_					0	0	0			REV__ENSG00000145545|ENST00000274192|SRD5A1	REV__ENSG00000145545|ENST00000274192|SRD5A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.2471008300781	2	420.247286	838.48002	-0.019633	-8.2508E-06	0.032835	1.3799E-05	0.013202	5.5482E-06	420.24712542796647	63.171	0.82824	63.171	62.807	63.635	0					60	30	3	0	0	0	0.2157	1	15617	15617		40.449	2.2974	1	515890	+		32746	16294	19034	19035	40086	40086					0.05431881637218794
PLAMLLGKREK	11	Unmodified	_PLAMLLGKREK_					0	0	0			REV__ENST00000373610.7_1_1:32661766-32662042:+|nuORF	REV__ENST00000373610.7_1_1:32661766-32662042:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.3827514648438	2	628.381383	1254.74821	0.62768	0.00039442	1.0072	0.00063289	1.6349	0.0010273	628.3824776047792	83.954	1.825	83.954	82.338	84.163	0					166	70	4	0	0	0	0.42346	1	21841	21841		8.1555	0	1	7918100	+		32747	20443	19035	19036	40087	40087					0.131028578932046
PLANKPGK	8	Unmodified	_PLANKPGK_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2314453125	2	412.75307	823.491587	-0.74823	-0.00030884	0.58925	0.00024321	-0.15899	-6.5623E-05	412.7532327899032	34.421	0.55574	34.421	34.22	34.775	0					25	19	2	0	0	0	0.34046	1	6769	6769		9.3474	0.75416	1	61254			32748	8114	19036	19037	40088	40088					0.07278123451237661
PLANRIKEAAR	11	Unmodified	_PLANRIKEAAR_					0	0	0		ENSG00000125741|ENST00000263275|OPA3;nc|ENSG00000125741|Q9H6K4-2|OPA3	ENSG00000125741|ENST00000263275|OPA3	ENSG00000125741|ENST00000263275|OPA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3734741210938	2	619.870028	1237.7255	0.29543	0.00018313	-0.1832	-0.00011356	0.11223	6.9568E-05	619.8690396100932	94.564	1.5426	94.562	93.798	95.341	-0.0020142					222	130	2	0	0	0	0.46655	1	25221	25221		2.4985	0.84587	1	200390			32749	3228	19037	19038	40089	40089					0.11614974819917734
PLAPKGRK	8	Unmodified	_PLAPKGRK_					0	0	0		ENSG00000140398|ENST00000355059|NEIL1;ENST00000567393.5_1_15:75645991-75647372:+|nuORF	ENSG00000140398|ENST00000355059|NEIL1	ENSG00000140398|ENST00000355059|NEIL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.56781005859375	2	433.782162	865.549771	-0.0087999	-3.8172E-06	-4.269	-0.0018518	-4.2778	-0.0018556	433.78097351693293	49.516	1.0576	49.56	49.21	50.268	0.044891					67	39	3	0	0	0	0.34218	1	11338	11338		9.3474	6.4582	1	154490			32750	4300	19038	19039	40090	40090					0.11161805096514854
PLAPKGRK	8	Unmodified	_PLAPKGRK_					0	0	0		ENSG00000140398|ENST00000355059|NEIL1;ENST00000567393.5_1_15:75645991-75647372:+|nuORF	ENSG00000140398|ENST00000355059|NEIL1	ENSG00000140398|ENST00000355059|NEIL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.5674743652344	2	433.782162	865.549771	-0.19683	-8.5379E-05	-4.4385	-0.0019253	-4.6353	-0.0020107	433.7811343147834	49.302	0.79169	49.334	49.045	49.837	0.032043					57	28	3	0	0	0	0.34319	1	11371	11371		2.5775	0.27475	1	247460			32751	4300	19038	19039	40091	40091					0.11161805096514854
PLAQLARLS	9	Unmodified	_PLAQLARLS_					0	0	0		ENST00000482429.1_1_6:31549873-31550179:-|nuORF	ENST00000482429.1_1_6:31549873-31550179:-|nuORF	ENST00000482429.1_1_6:31549873-31550179:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.28253173828125	2	484.798009	967.581465	0.29105	0.0001411	-0.65811	-0.00031905	-0.36706	-0.00017795	484.797605254628	51.57	0.90037	51.57	51.198	52.098	0					56	33	2	0	0	0	0.22596	1	11967	11967		21.747	21.747	1	3321500			32752	11046	19039	19040	40092	40092					0.09637753059814713
PLAQLARLS	9	Unmodified	_PLAQLARLS_					0	0	0		ENST00000482429.1_1_6:31549873-31550179:-|nuORF	ENST00000482429.1_1_6:31549873-31550179:-|nuORF	ENST00000482429.1_1_6:31549873-31550179:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	484.798009	967.581465	0.23481	0.00011384	-0.67566	-0.00032756	-0.44084	-0.00021372	484.79764166448723	51.645	1.0704	51.654	51.272	52.343	0.0095634	0.048955	-2.0185E-05	NaN	15.847	99	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3750500			32753	11046	19039	19040							0.09637753059814713
PLAQVFLGR	9	Unmodified	_PLAQVFLGR_					0	0	0			REV__ENSG00000132005|ENST00000254325|RFX1	REV__ENSG00000132005|ENST00000254325|RFX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8073425292969	2	500.800552	999.58655	0.50694	0.00025387	-0.46748	-0.00023412	0.039454	1.9758E-05	500.7978615242461	88.134	0.57604	88.134	87.951	88.527	0					65	30	3	0	0	0	0.25622	1	23213	23213		7.2892	0	1	125860	+		32754	15546	19040	19041	40093	40093					0.08674056922438922
PLARLPLL	8	Unmodified	_PLARLPLL_					0	0	0			REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	446.802490234375	2	446.802563	891.590573	0.34286	0.00015319	-0.27426	-0.00012254	0.068601	3.0651E-05	446.80234502761726	64.755	0.92246	64.755	64.37	65.293	0					85	33	4	0	0	0	0.25055	1	16154	16154		36.466	0	1	1467400	+		32755	16912	19041	19042	40094	40094					0.14044146416131298
PLARQCQLYF	10	Unmodified	_PLARQCQLYF_					0	0	0		ENST00000313269.5_1_8:145067038-145067119:+|nuORF	ENST00000313269.5_1_8:145067038-145067119:+|nuORF	ENST00000313269.5_1_8:145067038-145067119:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5496520996094	3	413.549864	1237.62776	0.41721	0.00017254	-0.56904	-0.00023533	-0.15183	-6.279E-05	413.54967693462083	19.983	1.3007	19.927	19.309	20.61	-0.055693					134	46	4	0	0	0	0.39935	1	2409	2409		1.7423	0	1	1092200			32756	9328	19042	19043	40095	40095					0.018454498995879476
PLASIPQL	8	Unmodified	_PLASIPQL_					0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2472229003906	2	419.755278	837.496004	0.10349	4.3441E-05	1.2347	0.00051828	1.3382	0.00056172	419.75507659072224	62.692	1.0709	62.683	62.094	63.165	-0.0085526					54	39	2	0	0	0	0.38703	1	15579	15579		20.871	0	1	172880	+		32757	16568	19043	19044	40096	40096					0.0707558787414655
PLASNFSNL	9	Unmodified	_PLASNFSNL_					0	0	0			REV__ENST00000340437.8_1_11:61171383-61171542:-|nuORF	REV__ENST00000340437.8_1_11:61171383-61171542:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.2717590332031	2	481.750724	961.486896	0.27171	0.0001309	0.013002	6.2637E-06	0.28471	0.00013716	481.7509144393982	30.557	0.28202	30.585	30.496	30.778	0.027948					12	9	2	0	0	0	0.25779	1	5599	5599		3.2813	0	1	55509	+		32758	20108	19044	19045	40097	40097					0.0046119451779986775
PLASSPKISEL	11	Unmodified	_PLASSPKISEL_					0	0	0			REV__nc|ENSG00000125447|Q9NZ52-2|GGA3	REV__nc|ENSG00000125447|Q9NZ52-2|GGA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.3262329101562	2	571.326796	1140.63904	0.31728	0.00018127	-0.90766	-0.00051857	-0.59038	-0.0003373	571.3261477925187	93.202	0.33994	93.289	93.246	93.586	0.086678					46	30	2	0	0	0	0.33149	1	24816	24816		5.2969	2.3016	1	174300	+		32759	15266	19045	19046	40098	40098					0.07434550474727075
PLATWVELT	9	Unmodified	_PLATWVELT_					0	0	0		ENST00000240285.9_1_8:74206860-74207115:+|nuORF	ENST00000240285.9_1_8:74206860-74207115:+|nuORF	ENST00000240285.9_1_8:74206860-74207115:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2944946289062	2	515.2844	1028.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.19	1	79.161	78.661	79.661	-0.028931								0	0	0	0.21726	1	20507	20507		16.942	0	1				32760	8884	19046	19047	40099	40099					0.04111224728740126
PLAVILVMY	9	Unmodified	_PLAVILVMY_					0	0	0		ENSG00000170214|ENST00000306675|ADRA1B	ENSG00000170214|ENST00000306675|ADRA1B	ENSG00000170214|ENST00000306675|ADRA1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8039245605469	2	509.803914	1017.59328	0.42826	0.00021833	-0.35251	-0.00017971	0.075749	3.8617E-05	509.8036382599112	74.281	2.861	74.281	72.534	75.395	0					173	101	3	0	0	0	0.29662	1	19043	19043		9.3474	0	1	1842200			32761	6431	19047	19048	40100	40100					0.08518233758775295
PLAVPGRL	8	Unmodified	_PLAVPGRL_					0	0	0			REV__ENST00000393677.8_2_10:99496962-99497079:+|nuORF	REV__ENST00000393677.8_2_10:99496962-99497079:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2096862792969	2	411.763438	821.512323	0.24795	0.0001021	-0.84429	-0.00034765	-0.59634	-0.00024555	411.7630773595871	38.251	0.49313	38.341	38.101	38.594	0.090885					23	17	2	0	0	0	0.34218	1	7933	7933		5.2307	0	1	77497	+		32762	20383	19048	19049	40101	40101					0.0944271383089017
PLAVRALTPV	10	Unmodified	_PLAVRALTPV_					0	0	0		nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2	nc|ENSG00000109381|Q15723-4|ELF2	nc|ENSG00000109381|Q15723-4|ELF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2887573242188	2	518.829309	1035.64407	0.74918	0.0003887	-0.0073445	-3.8105E-06	0.74183	0.00038488	518.8292311195562	54.713	0.34863	54.713	54.462	54.811	0					19	12	2	0	0	0	0.30079	1	12955	12955		14.838	4.7643	1	182750			32763	2250	19049	19050	40102	40102					0.12766899127973375
PLAVTIRLF	9	Unmodified	_PLAVTIRLF_					0	0	0			REV__ENSG00000062822|ENST00000440232|POLD1	REV__ENSG00000062822|ENST00000440232|POLD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.310302734375	2	515.326402	1028.63825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.021	1	70.021	69.521	70.521	0								0	0	0	0.21726	1	17725	17725		16.942	4.4107	1		+		32764	13636	19050	19051	40103	40103					0.1250780061632213
PLAYVIRD	8	Unmodified	_PLAYVIRD_					0	0	0			REV__ENST00000265080.8_1_5:80521618-80521792:+|nuORF	REV__ENST00000265080.8_1_5:80521618-80521792:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.3055419921875	2	473.77146	945.528367	0.38768	0.00018367	-0.55345	-0.00026221	-0.16577	-7.8537E-05	473.7714313827724	44.271	0.39996	44.34	44.199	44.599	0.068569					24	14	2	0	0	0	0.33993	1	9783	9783		11.64	3.7301	1	219270	+		32765	19646	19051	19052	40104	40104					0.05342375277143674
PLCAAPLPVT	10	Unmodified	_PLCAAPLPVT_					0	0	0			REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF	REV__ENST00000590539.1_1_17:33734386-33734668:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.284423828125	2	491.275521	980.536489	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.849	1	71.905	71.405	72.405	0.056572								0	0	0	0.32028	1	18278	18278		25.399	3.6527	1		+		32766	22553	19052	19053	40105	40105					0.045441862022585156
PLCCKVVIK	9	Unmodified	_PLCCKVVIK_					0	0	0		nc|ENSG00000163297|P58335-2|ANTXR2;ENSG00000163297|ENST00000403729|ANTXR2;nc|ENSG00000163297|P58335|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	nc|ENSG00000163297|P58335-2|ANTXR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2806701660156	2	501.795566	1001.57658	0.49329	0.00024753	-0.42671	-0.00021412	0.06658	3.3409E-05	501.79535554839777	37.951	0.67398	37.951	37.532	38.206	0					34	23	2	0	0	0	0.24913	1	7773	7773		7.9102	0.62092	1	209910			32767	5663	19053	19054	40106	40106					0.07585409601176707
PLCEMHYAL	9	Unmodified	_PLCEMHYAL_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2949829101562	2	538.748813	1075.48307	0.55383	0.00029838	-0.023939	-1.2897E-05	0.52989	0.00028548	538.7494171157458	82.225	0.41216	82.225	82.024	82.436	0					20	14	2	0	0	0	0.24739	1	21492	21492		13.508	0.97634	1	210900			32768	8057	19054	19055	40107	40107					-0.051649345719170014
PLCEPAELFLI	11	Unmodified	_PLCEPAELFLI_					0	0	0		nc|ENSG00000163534|Q96LA6-3|FCRL1;nc|ENSG00000163534|Q96LA6-2|FCRL1;ENSG00000163534|ENST00000368176|FCRL1;ENST00000368175.7_1_1:157771904-157789836:-|nuORF	nc|ENSG00000163534|Q96LA6-3|FCRL1	nc|ENSG00000163534|Q96LA6-3|FCRL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8321533203125	2	622.8334	1243.65225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.37	1	72.342	71.842	72.842	-0.027275								0	0	0	0.30959	1	18431	18431		17.113	0.96379	1				32769	5697	19055	19056	40108	40108					0.04016665262429342
PLCGEVPPLF	10	Unmodified	_PLCGEVPPLF_					0	0	0			REV__OTOGL|p.N2038Tfs*20|1|0.02|ENSG00000165899|chr12:80358723-80358724|-/ACATATA|frameshift_variant	REV__OTOGL|p.N2038Tfs*20|1|0.02|ENSG00000165899|chr12:80358723-80358724|-/ACATATA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7474975585938	2	536.280803	1070.54705	0.53322	0.00028596	-2.3667	-0.0012692	-1.8335	-0.00098326	536.2794765808754	73.346	0.40229	73.317	73.101	73.503	-0.029305					20	14	2	0	0	0	0.29519	1	18679	18679		21.747	3.6117	1	91947	+		32770	17273	19056	19057	40109	40109					0.014601688566699522
PLCIGRLIPV	10	Unmodified	_PLCIGRLIPV_					0	0	0		ENSG00000128059|ENST00000264220|PPAT	ENSG00000128059|ENST00000264220|PPAT	ENSG00000128059|ENST00000264220|PPAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.83251953125	2	540.833537	1079.65252	0.54433	0.00029439	-3.576	-0.001934	-3.0317	-0.0016396	540.8325368674184	68.612	2.737	68.612	68.226	70.963	0					296	99	6	0	0	0	0.29978	2	17222	17222;17509		20.454	1.0146	1	81383000			32771	3350	19057	19058	40110;40111	40110					0.11588129772940192
PLCIGRLIPV	10	Unmodified	_PLCIGRLIPV_					0	0	0		ENSG00000128059|ENST00000264220|PPAT	ENSG00000128059|ENST00000264220|PPAT	ENSG00000128059|ENST00000264220|PPAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.83251953125	2	540.833537	1079.65252	0.46712	0.00025263	-3.6096	-0.0019522	-3.1425	-0.0016996	540.8325338539388	68.534	2.4612	68.606	68.24	70.701	0.071938					290	88	6	0	0	0	0.29978	3	17196	17196;17484;17539		20.454	6.5476	1	80195000			32772	3350	19057	19058	40112;40113;40114	40112					0.11588129772940192
PLCIGRLIPV	10	Unmodified	_PLCIGRLIPV_					0	0	0		ENSG00000128059|ENST00000264220|PPAT	ENSG00000128059|ENST00000264220|PPAT	ENSG00000128059|ENST00000264220|PPAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8327026367188	2	540.833537	1079.65252	0.60207	0.00032562	-3.7165	-0.00201	-3.1144	-0.0016844	540.8324534392195	68.627	2.7535	68.608	68.223	70.976	-0.01915					310	98	6	0	0	0	0.2593	2	17265	17213;17265		25.399	2.3186	1	81405000			32773	3350	19057	19058	40115;40116	40116					0.11588129772940192
PLCKAKSRS	9	Unmodified	_PLCKAKSRS_					0	0	0		nc|ENSG00000126970|Q9NQZ6-3|ZC4H2;nc|ENSG00000126970|Q9NQZ6-5|ZC4H2;ENSG00000126970|ENST00000374839|ZC4H2	nc|ENSG00000126970|Q9NQZ6-3|ZC4H2	nc|ENSG00000126970|Q9NQZ6-3|ZC4H2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.95904541015625	2	495.281669	988.548785	0.4605	0.00022808	1.1512	0.00057017	1.6117	0.00079825	495.28001246579583	94.39	0.066345	94.388	94.349	94.415	-0.0020142					7	5	2	0	0	0	0.25202	1	25167	25167		3.5965	0	1	31063			32774	3302	19058	19059	40117	40117					0.0540522266529706
PLCLCQWRGSK	11	Unmodified	_PLCLCQWRGSK_					0	0	0			REV__ENST00000381496.7_1_10:468766-532425:-|nuORF	REV__ENST00000381496.7_1_10:468766-532425:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8882751464844	3	430.88637	1289.63728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.84	1	29.852	29.352	30.352	0.012266								0	0	0	0.36335	1	5389	5389		2.4348	0	1		+		32775	20566	19059	19060	40118	40118					0.0040489491345852
PLCLFYDD	8	Unmodified	_PLCLFYDD_					0	0	0			REV__nc|ENSG00000160049|O00273-2|DFFA	REV__nc|ENSG00000160049|O00273-2|DFFA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.28045654296875	2	493.220411	984.426269	0.12339	6.0859E-05	-0.64352	-0.0003174	-0.52013	-0.00025654	493.2201197023037	14.801	0.28716	14.691	14.56	14.847	-0.10981					16	9	2	0	0	0	0.344	1	872	872		2.5775	0.27475	1	64672	+		32776	16874	19060	19061	40119	40119					-0.06656658856798003
PLCLPLRFV	9	Unmodified	_PLCLPLRFV_					0	0	0		ENST00000491154.1_1_X:153670691-153670829:+|nuORF	ENST00000491154.1_1_X:153670691-153670829:+|nuORF	ENST00000491154.1_1_X:153670691-153670829:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8136596679688	2	529.31498	1056.61541	0.39728	0.00021029	0.61342	0.00032469	1.0107	0.00053498	529.3152512036363	75.646	0.83546	75.698	75.269	76.104	0.052368					52	30	2	0	0	0	0.25417	1	19324	19324		8.5933	8.5933	1	350530			32777	11175	19061	19062	40120	40120					0.08936458227208277
PLCQALIGTR	10	Unmodified	_PLCQALIGTR_					0	0	0			REV__ENSG00000204583|ENST00000376608|LRCOL1	REV__ENSG00000204583|ENST00000376608|LRCOL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.7861328125	2	536.302601	1070.59065	0.36286	0.00019461	-2.1817	-0.0011701	-1.8188	-0.00097545	536.301500063656	25.478	0.12021	25.478	25.413	25.533	0					5	3	2	0	0	0	0.32072	1	4055	4055		2.9952	0.69251	1	24170	+		32778	18954	19062	19063	40121	40121					0.05817778353821268
PLCTLFLA	8	Unmodified	_PLCTLFLA_					0	0	0			REV__ENSG00000148215|ENST00000373680|OR5C1	REV__ENSG00000148215|ENST00000373680|OR5C1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.2306213378906	2	439.246232	876.477911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.785	1	81.854	81.354	82.354	0.068993								0	0	0	0.3683	1	21310	21310		6.3541	0	1		+		32779	16416	19063	19064	40122	40122					0.03473129627764138
PLCVKLFK	8	Unmodified	_PLCVKLFK_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2911071777344	2	474.290974	946.567395	0.2906	0.00013783	-0.54823	-0.00026002	-0.25764	-0.00012219	474.2908160608688	75.004	1.142	75.004	74.679	75.821	0					81	40	3	0	0	0	0.42446	1	19252	19252		14.582	8.8213	1	476000	+		32780	15219	19064	19065	40123	40123					0.09197384307162793
PLCVKLFK	8	Unmodified	_PLCVKLFK_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7442932128906	2	474.290974	946.567395	0.2906	0.00013783	-0.54823	-0.00026002	-0.25764	-0.00012219	474.2908160608688	75.004	1.142	75.004	74.679	75.821	0					81	40	3	0	0	0	0.34218	1	19304	19304		9.3474	9.3474	1	476000	+		32781	15219	19064	19065	40124	40124					0.09197384307162793
PLCVKLFK	8	Unmodified	_PLCVKLFK_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.29107666015625	2	474.290974	946.567395	0.25967	0.00012316	-0.52679	-0.00024985	-0.26712	-0.00012669	474.29083765244906	74.966	1.1147	75.018	74.64	75.755	0.052368					74	40	3	0	0	0	0.4397	1	19258	19258		9.3474	3.587	1	316120	+		32782	15219	19064	19065	40125	40125					0.09197384307162793
PLCVKLFK	8	Unmodified	_PLCVKLFK_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7441101074219	2	474.290974	946.567395	0.25967	0.00012316	-0.52679	-0.00024985	-0.26712	-0.00012669	474.29083765244906	74.966	1.1147	75.018	74.64	75.755	0.052368					74	40	3	0	0	0	0.34218	1	19283	19283		9.3474	9.3474	1	316120	+		32783	15219	19064	19065	40126	40126					0.09197384307162793
PLCVKLFK	8	Unmodified	_PLCVKLFK_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2911376953125	2	474.290974	946.567395	0.48783	0.00023137	-0.38498	-0.00018259	0.10284	4.8778E-05	474.29076287901376	75.074	1.2386	75.042	74.642	75.881	-0.031487					78	45	2	0	0	0	0.4397	1	19264	19264		9.3474	9.3474	1	392330	+		32784	15219	19064	19065	40127	40127					0.09197384307162793
PLCVPLIRS	9	Unmodified	_PLCVPLIRS_					0	0	0			REV__ENSG00000116176|ENST00000234798|TPSG1	REV__ENSG00000116176|ENST00000234798|TPSG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2873840332031	2	499.296788	996.579022	0.38835	0.0001939	0.36555	0.00018252	0.7539	0.00037642	499.2970161093355	44.328	0.16862	44.403	44.307	44.475	0.075047					9	5	2	0	0	0	0.27532	1	9813	9813		12.532	12.532	1	94872	+		32785	14915	19065	19066	40128	40128					0.08059581330485344
PLDAFGPI	8	Unmodified	_PLDAFGPI_					0	0	0			REV__nc|ENSG00000153234|P43354-2|NR4A2	REV__nc|ENSG00000153234|P43354-2|NR4A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.23663330078125	2	415.226354	828.438155	0.039915	1.6574E-05	-0.43683	-0.00018138	-0.39691	-0.00016481	415.2260679136507	72.064	0.44212	72.064	71.773	72.215	0					27	15	2	0	0	0	0.38703	1	18373	18373		20.871	1.4322	1	235400	+		32786	16617	19066	19067	40129	40129					0.017073259487233372
PLDDVYSLFF	10	Unmodified	_PLDDVYSLFF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.5749816894531	3	405.869257	1214.58594	0.11029	4.4762E-05	-1.9848	-0.00080558	-1.8745	-0.00076082	405.868592959329	29.183	0.51542	29.183	29.006	29.521	0					34	18	3	0	0	0	0.32033	1	5150	5150		4.1895	0.60244	1	129540			32787	3324	19067	19068	40130	40130					-0.01276827307970052
PLDERTKQ	8	Unmodified	_PLDERTKQ_					0	0	0			REV__ENST00000477797.1_1_7:143947564-143947660:+|nuORF	REV__ENST00000477797.1_1_7:143947564-143947660:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.8158874511719	2	493.766906	985.519259	0.34796	0.00017181	0.62546	0.00030883	0.97341	0.00048064	493.7671989013973	32.923	0.60791	32.978	32.786	33.394	0.055309					35	21	2	0	0	0	0.33245	1	6272	6272		13.508	0	1	354570	+		32788	21441	19068	19069	40131	40131					0.02591981920818398
PLDFPSKK	8	Unmodified	_PLDFPSKK_					0	0	0		ENST00000463343.1_1_11:64543889-64545891:-|nuORF;ENST00000482693.1_1_11:64540804-64545891:-|nuORF;nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1	ENST00000463343.1_1_11:64543889-64545891:-|nuORF	ENST00000463343.1_1_11:64543889-64545891:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2533264160156	2	466.26601	930.517468	0.26998	0.00012588	-0.93576	-0.00043631	-0.66578	-0.00031043	466.2657771829373	32.312	0.46162	32.312	32.145	32.606	0					24	16	2	0	0	0	0.12475	1	6126	6126		56.177	23.872	1	126220			32789	6243	19069	19070	40132	40132					0.049429729028588554
PLDFPSKK	8	Unmodified	_PLDFPSKK_					0	0	0		ENST00000463343.1_1_11:64543889-64545891:-|nuORF;ENST00000482693.1_1_11:64540804-64545891:-|nuORF;nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1	ENST00000463343.1_1_11:64543889-64545891:-|nuORF	ENST00000463343.1_1_11:64543889-64545891:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.25311279296875	2	466.26601	930.517468	0.36747	0.00017134	-0.83298	-0.00038839	-0.46551	-0.00021705	466.26574673892145	32.19	0.44308	32.233	31.994	32.437	0.042366					20	15	2	0	0	0	0.17289	1	6104	6104		47.749	20.865	1	123090			32790	6243	19069	19070	40133	40133					0.049429729028588554
PLDFPSKK	8	Unmodified	_PLDFPSKK_					0	0	0		ENST00000463343.1_1_11:64543889-64545891:-|nuORF;ENST00000482693.1_1_11:64540804-64545891:-|nuORF;nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1	ENST00000463343.1_1_11:64543889-64545891:-|nuORF	ENST00000463343.1_1_11:64543889-64545891:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2531433105469	2	466.26601	930.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.211	1	32.265	31.765	32.765	0.054371								0	0	0	0.17733	1	6107	6107		47.749	5.9091	1				32791	6243	19069	19070	40134	40134					0.049429729028588554
PLDIFVHRDL	10	Unmodified	_PLDIFVHRDL_					0	0	0			REV__ENST00000563218.5_1_16:89599028-89614565:+|nuORF	REV__ENST00000563218.5_1_16:89599028-89614565:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5555114746094	3	408.896029	1223.66626	0.057158	2.3372E-05	0.039976	1.6346E-05	0.097134	3.9718E-05	408.8959405412609	43.79	0.47535	43.868	43.599	44.074	0.077518					34	17	3	0	0	0	0.31911	1	9567	9567		0.69767	0	1	407360	+		32792	18781	19070	19071	40135	40135					0.06337078805768215
PLDKISPSSL	10	Unmodified	_PLDKISPSSL_					0	0	0			REV__nc|ENSG00000172534|P51610-2|HCFC1	REV__nc|ENSG00000172534|P51610-2|HCFC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8136596679688	2	528.800414	1055.58628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.275	1	75.328	74.828	75.828	0.052361								0	0	0	0.33945	1	19324	19324		19.257	0	1		+		32793	17721	19071	19072	40136	40136					0.060705924119247356
PLDLEFMK	8	Unmodified	_PLDLEFMK_					0	0	0		nc|ENSG00000100167|Q9UH03-2|SEPTIN3;nc|ENSG00000100167|Q9UH03|SEPTIN3;ENSG00000100167|ENST00000644076|SEPTIN3	nc|ENSG00000100167|Q9UH03-2|SEPTIN3	nc|ENSG00000100167|Q9UH03-2|SEPTIN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.29034423828125	2	496.759704	991.504854	0.37515	0.00018636	3.2777	0.0016282	3.6529	0.0018146	496.76143584214503	43.445	0.31875	43.445	43.362	43.681	0					19	11	2	0	0	0	0.34039	1	9588	9588		10.824	0	1	173370			32794	1540	19072	19073	40137	40137					0.008761934483118239
PLDLEFMK	8	Unmodified	_PLDLEFMK_					0	0	0		nc|ENSG00000100167|Q9UH03-2|SEPTIN3;nc|ENSG00000100167|Q9UH03|SEPTIN3;ENSG00000100167|ENST00000644076|SEPTIN3	nc|ENSG00000100167|Q9UH03-2|SEPTIN3	nc|ENSG00000100167|Q9UH03-2|SEPTIN3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	496.759704	991.504854	0.55146	0.00027395	2.8582	0.0014198	3.4096	0.0016938	496.76133484399804	43.436	0.42033	43.514	43.234	43.654	0.077515	0.030271	-0.00015215	NaN	6.7232	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167520			32795	1540	19072	19073							0.008761934483118239
PLDLEFMK	8	Unmodified	_PLDLEFMK_					0	0	0		nc|ENSG00000100167|Q9UH03-2|SEPTIN3;nc|ENSG00000100167|Q9UH03|SEPTIN3;ENSG00000100167|ENST00000644076|SEPTIN3	nc|ENSG00000100167|Q9UH03-2|SEPTIN3	nc|ENSG00000100167|Q9UH03-2|SEPTIN3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	496.759704	991.504854	0.41061	0.00020398	2.945	0.001463	3.3556	0.0016669	496.76119322895886	43.407	0.33456	43.491	43.241	43.576	0.083992	0.0076821	-6.5885E-05	NaN	6.7232	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191380			32796	1540	19072	19073							0.008761934483118239
PLDNSVTMFP	10	Unmodified	_PLDNSVTMFP_					0	0	0			REV__ENSG00000150750|ENST00000280325|POU2AF2	REV__ENSG00000150750|ENST00000280325|POU2AF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3155517578125	2	560.7708	1119.52705	0.34422	0.00019303	-1.4538	-0.00081522	-1.1095	-0.00062219	560.7696706062053	94.812	0.29919	94.81	94.683	94.982	-0.0020142					31	24	2	0	0	0	0.31482	1	25283	25283		11.64	0.81637	1	82085	+		32797	16507	19073	19074	40138	40138					-0.02793626873926769
PLDPLDLR	8	Unmodified	_PLDPLDLR_					0	0	0			REV__SPECC1|p.S912Cfs*5|1|0.13|ENSG00000128487|chr17:20257503-20257504|-/TGCAAACATATAT|frameshift_variant	REV__SPECC1|p.S912Cfs*5|1|0.13|ENSG00000128487|chr17:20257503-20257504|-/TGCAAACATATAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.27703857421875	2	469.768917	937.523281	-0.13385	-6.288E-05	-0.558	-0.00026213	-0.69186	-0.00032501	469.7688559900193	39.936	0.13739	39.936	39.831	39.968	0					5	4	2	0	0	0	0.33993	1	8474	8474		11.64	0	1	59925	+		32798	15371	19074	19075	40139	40139					0.0520207141452147
PLDPSDYM	8	Unmodified	_PLDPSDYM_					0	0	0			REV__ENST00000429480.2_1_1:6298805-6299333:+|nuORF	REV__ENST00000429480.2_1_1:6298805-6299333:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2768859863281	2	469.202218	936.389884	0.041903	1.9661E-05	-2.7364	-0.0012839	-2.6945	-0.0012643	469.2013254100018	40.199	0.1765	40.199	40.05	40.226	0					7	5	2	0	0	0	0.34218	1	8520	8520		9.3474	0	1	91794	+		32799	20933	19075	19076	40140	40140					-0.08085535753502882
PLDPSTAVPF	10	Unmodified	_PLDPSTAVPF_					0	0	0			REV__ENSG00000130287|ENST00000252575|NCAN	REV__ENSG00000130287|ENST00000252575|NCAN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2470703125	2	522.274032	1042.53351	0.60092	0.00031385	-2.6268	-0.0013719	-2.0259	-0.0010581	522.272446192798	56.655	0.22852	56.734	56.628	56.857	0.078671					13	8	2	0	0	0	0.30079	1	13650	13650		14.838	8.4842	1	185710	+		32800	15446	19076	19077	40141	40141					0.013946343490943036
PLDSEVYDNLK	11	Unmodified	_PLDSEVYDNLK_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8882751464844	3	431.550475	1291.6296	-0.00041366	-1.7852E-07	0.95312	0.00041132	0.9527	0.00041114	431.5509759586268	29.604	0.58559	29.617	29.331	29.917	0.012266					46	19	4	0	0	0	0.3322	1	5389	5389		2.6312	0.19645	1	240970	+		32801	16009	19077	19078	40142	40142					-0.004552626014628913
PLDSEVYDNLK	11	Unmodified	_PLDSEVYDNLK_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	431.550475	1291.6296	0.075906	3.2757E-05	0.91469	0.00039473	0.99059	0.00042749	431.5509029271013	29.666	0.50788	29.666	29.492	29.999	0	0.019463	-0.00022	NaN	2.6312	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198050	+		32802	16009	19077	19078							-0.004552626014628913
PLDSEVYDNLK	11	Unmodified	_PLDSEVYDNLK_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	431.550475	1291.6296	-0.28854	-0.00012452	1.6293	0.00070311	1.3407	0.00057859	431.5510635790726	29.643	0.61652	29.657	29.421	30.038	0.013475	0.010289	0.00070514	NaN	2.6312	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292740	+		32803	16009	19077	19078							-0.004552626014628913
PLDSRYVTLT	10	Unmodified	_PLDSRYVTLT_					0	0	0		ENSG00000163449|ENST00000437356|TMEM169	ENSG00000163449|ENST00000437356|TMEM169	ENSG00000163449|ENST00000437356|TMEM169	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.3505249023438	2	582.816596	1163.61864	0.97934	0.00057078	-0.54522	-0.00031776	0.43412	0.00025301	582.8161465443609	50.478	0.45882	50.498	50.335	50.794	0.020691					30	16	2	0	0	0	0.31629	1	11758	11758		10.074	0.6908	1	275520			32804	5679	19078	19079	40143	40143					0.04337379814887754
PLDWHFLTV	9	Unmodified	_PLDWHFLTV_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.7716674804688	2	564.297842	1126.58113	0.36143	0.00020395	1.5677	0.00088466	1.9291	0.0010886	564.2994211539218	87.751	1.3321	87.748	87.027	88.359	-0.0028381					116	67	3	0	0	0	0.25938	1	23282	23282		4.3292	0	1	375790	+		32805	14898	19079	19080	40144	40144					0.02290333339942663
PLDWHFLTV	9	Unmodified	_PLDWHFLTV_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	564.297842	1126.58113	0.42776	0.00024139	1.2272	0.00069251	1.655	0.0009339	564.2991974780178	87.723	1.0376	87.723	87.278	88.315	0	0.0066694	4.8449E-05	NaN	4.3292	93	50	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283060	+		32806	14898	19079	19080							0.02290333339942663
PLDWHFLTV	9	Unmodified	_PLDWHFLTV_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.297842	1126.58113	0.43763	0.00024695	0.92659	0.00052287	1.3642	0.00076983	564.2985938004803	87.59	0.4678	87.677	87.438	87.906	0.08709	-0.038971	-0.00029084	NaN	4.3292	65	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383330	+		32807	14898	19079	19080							0.02290333339942663
PLDWLGFHLL	10	Unmodified	_PLDWLGFHLL_					0	0	0			REV__ENST00000476408.1_1_1:111434968-111435040:+|nuORF	REV__ENST00000476408.1_1_1:111434968-111435040:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.92926025390625	3	404.225486	1209.65463	-0.37089	-0.00014992	4.3018	0.0017389	3.9309	0.001589	404.2288281805817	42.853	0.10658	42.944	42.879	42.985	0.091362					5	3	2	0	0	0	0.318	1	9354	9354		3.8763	1.1411	1	108800	+		32808	21425	19080	19081	40145	40145					0.05818881782420249
PLDWRNNI	8	Unmodified	_PLDWRNNI_					0	0	0			REV__SPTBN2|p.S1719Pfs*11|1|0.21|ENSG00000173898|chr11:66692572-66692572|G/-|frameshift_variant	REV__SPTBN2|p.S1719Pfs*11|1|0.21|ENSG00000173898|chr11:66692572-66692572|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8134155273438	2	514.269616	1026.52468	0.21245	0.00010926	3.3491	0.0017224	3.5616	0.0018316	514.7737443799494	49.639	0.12815	49.684	49.621	49.749	0.044891					7	4	2	0	0	0	0.34046	1	11460	11460		9.3474	0.75416	1	63561	+		32809	17811	19081	19082	40146	40146					0.01247705503283214
PLDYVQLKMEK	11	Unmodified	_PLDYVQLKMEK_					0	0	0			REV__ENSG00000006695|ENST00000261643|COX10	REV__ENSG00000006695|ENST00000261643|COX10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.6183166503906	3	455.247851	1362.72172	0.27564	0.00012548	-0.037411	-1.7031E-05	0.23823	0.00010845	455.2479348269885	87.183	1.4048	87.177	86.286	87.691	-0.0056229					120	61	3	0	0	0	0.33303	1	22861	22861		2.4348	0.52841	1	580820	+		32810	13370	19082	19083	40147	40147					0.05487124211208538
PLEAAVLLL	9	Unmodified	_PLEAAVLLL_					0	0	0			REV__ENSG00000185924|ENST00000331238|RTN4RL1	REV__ENSG00000185924|ENST00000331238|RTN4RL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7996826171875	2	469.799686	937.584819	0.19144	8.9936E-05	0.19494	9.1583E-05	0.38638	0.00018152	469.799592723571	87.917	0.97851	88.006	87.746	88.724	0.089195					120	48	4	0	0	0	0.018072	1	23159	23159		67.035	6.6458	1	1179700	+		32811	18420	19083	19084	40148	40148					0.11353003113799787
PLEAAVLLL	9	Unmodified	_PLEAAVLLL_					0	0	0			REV__ENSG00000185924|ENST00000331238|RTN4RL1	REV__ENSG00000185924|ENST00000331238|RTN4RL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	469.799686	937.584819	0.19144	8.9936E-05	0.19494	9.1583E-05	0.38638	0.00018152	469.799592723571	87.917	0.97851	88.006	87.746	88.724	0.089195	-0.036085	2.7361E-05	NaN	67.035	120	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1179700	+		32812	18420	19083	19084							0.11353003113799787
PLEDQFAKRI	10	Unmodified	_PLEDQFAKRI_					0	0	0		RRS1|p.E216Gfs*71|1|0.28|ENSG00000179041|chr8:66429773-66429774|-/A|frameshift_variant;ENSG00000179041|ENST00000320270|RRS1	RRS1|p.E216Gfs*71|1|0.28|ENSG00000179041|chr8:66429773-66429774|-/A|frameshift_variant	RRS1|p.E216Gfs*71|1|0.28|ENSG00000179041|chr8:66429773-66429774|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8379516601562	2	608.837862	1215.66117	-0.013757	-8.376E-06	-0.033989	-2.0694E-05	-0.047747	-2.907E-05	608.8376537357569	105.7	0.97192	105.7	105.33	106.3	0					340	139	3	0	0	0	0.40262	1	28010	28010		2.9952	2.9952	1	931180			32813	7098	19084	19085	40149	40149					0.061967749431460106
PLEEMVFPL	9	Unmodified	_PLEEMVFPL_					0	0	0			REV__ENSG00000182747|ENST00000331858|SLC35D3	REV__ENSG00000182747|ENST00000331858|SLC35D3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7947998046875	2	537.780636	1073.54672	0.42528	0.00022871	4.4647	0.002401	4.8899	0.0026297	537.7832626156245	57.876	0.15738	57.962	57.84	57.997	0.085621					7	5	2	0	0	0	0.26879	1	14004	14004		13.508	0.97634	1	85948	+		32814	18213	19085	19086	40150	40150					0.012887491368474002
PLEEMVPLS	9	Unmodified	_PLEEMVPLS_					0	0	0		nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3;ENST00000608648.1_1_19:18220994-18239762:+|nuORF	nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000099308|O60307|MAST3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.30230712890625	2	507.762443	1013.51033	0.28096	0.00014266	1.5687	0.00079654	1.8497	0.0009392	507.76320053660385	43.68	0.4377	43.68	43.467	43.904	0					26	15	3	0	0	0	0.2451	1	9628	9628		10.824	0	1	252110			32815	1482	19086	19087	40151	40151					0.004118722401244668
PLEINETEKV	10	Unmodified	_PLEINETEKV_					0	0	0		ENSG00000103351|ENST00000576634|CLUAP1;nc|ENSG00000103351|Q96AJ1-2|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.813232421875	2	586.313886	1170.61322	0.1245	7.2998E-05	1.0312	0.0006046	1.1557	0.0006776	586.3141699197412	95.414	0.64893	95.414	95.125	95.774	0					101	63	2	0	0	0	0.31926	1	25503	25503		5.7319	1.4026	1	129000			32816	1830	19087	19088	40152	40152					0.03473656232426947
PLEIVKIRL	9	Unmodified	_PLEIVKIRL_					0	0	0		nc|ENSG00000004864|Q9UJS0-2|SLC25A13;ENSG00000004864|ENST00000265631|SLC25A13;nc|ENSG00000115840|O75746-2|SLC25A12;ENSG00000115840|ENST00000422440|SLC25A12	nc|ENSG00000004864|Q9UJS0-2|SLC25A13;nc|ENSG00000115840|O75746-2|SLC25A12	nc|ENSG00000004864|Q9UJS0-2|SLC25A13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3739013671875	2	540.860609	1079.70667	0.10439	5.646E-05	0.70275	0.00038009	0.80714	0.00043655	540.8607716881174	39.125	0.27979	39.125	38.988	39.268	0					16	9	2	0	0	0	0.22596	1	8234	8234		21.747	5.8995	1	216700			32817	317;2682	19088	19089	40153	40153					0.17000045196164137
PLEKKKKFLLF	11	Unmodified	_PLEKKKKFLLF_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.8009033203125	3	464.298874	1389.87479	0.27482	0.0001276	1.4007	0.00065035	1.6755	0.00077795	464.2997461253204	39.98	1.1301	40.079	39.676	40.806	0.099407					116	40	4	0	0	0	0.33326	1	8684	8684		1.4551	0.94916	1	848450			32818	4171	19089	19090	40154	40154					0.19545107389990335
PLELCLPP	8	Unmodified	_PLELCLPP_					0	0	0			REV__ENST00000534837.5_1_12:6803716-6804310:-|nuORF	REV__ENST00000534837.5_1_12:6803716-6804310:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2705383300781	2	441.243689	880.472826	0.10637	4.6936E-05	0.4321	0.00019066	0.53848	0.0002376	441.2447112546315	74.649	1.7012	74.702	74.459	76.16	0.052361					88	61	3	0	0	0	0.34218	1	19535	19535		5.2307	0	1	436700	+		32819	22062	19090	19091	40155	40155					0.027808257651599888
PLELEGVKV	9	Unmodified	_PLELEGVKV_					0	0	0		ENSG00000168140|ENST00000304735|VASN	ENSG00000168140|ENST00000304735|VASN	ENSG00000168140|ENST00000304735|VASN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2640686035156	2	492.292225	982.569897	0.23347	0.00011493	-0.73683	-0.00036273	-0.50336	-0.0002478	492.29175815425657	59.965	0.29385	59.953	59.763	60.057	-0.011486					16	9	2	0	0	0	0.2451	1	14587	14587		10.824	0	1	299270			32820	6250	19091	19092	40156	40156					0.07791511245807214
PLELEGVKV	9	Unmodified	_PLELEGVKV_					0	0	0		ENSG00000168140|ENST00000304735|VASN	ENSG00000168140|ENST00000304735|VASN	ENSG00000168140|ENST00000304735|VASN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	492.292225	982.569897	-0.22199	-0.00010928	-0.52424	-0.00025808	-0.74623	-0.00036737	492.2918432557482	59.871	0.46955	59.967	59.741	60.211	0.095089	0.0067256	6.0397E-05	NaN	10.824	19	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336660			32821	6250	19091	19092							0.07791511245807214
PLENLPSL	8	Unmodified	_PLENLPSL_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.75	2	441.750193	881.485833	0.21213	9.371E-05	-0.04611	-2.0369E-05	0.16602	7.3341E-05	441.75003811396823	52.272	1.7884	52.323	51.817	53.605	0.050575					109	65	3	0	0	0	0.16192	1	12322	12322		49.669	0	1	994110			32822	7353	19092	19093	40157	40157					0.04034980148901468
PLEPQVLTI	9	Unmodified	_PLEPQVLTI_					0	0	0			REV__ENSG00000008869|ENST00000233099|HEATR5B	REV__ENSG00000008869|ENST00000233099|HEATR5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7922058105469	2	505.30005	1008.58555	0.50592	0.00025564	-1.4821	-0.00074891	-0.9762	-0.00049327	505.7996236470998	86.118	0.55775	86.118	85.989	86.546	0					29	22	2	0	0	0	0.24913	1	22623	22623		12.532	0	1	211130	+		32823	13404	19093	19094	40158	40158					0.0815979776284621
PLERKLIK	8	Unmodified	_PLERKLIK_					0	0	0		ENSG00000171320|ENST00000305188|ESCO2;ENST00000524293.1_1_8:27633031-27634707:+|nuORF;ESCO2|p.K139Nfs*6|1|0.28|ENSG00000171320|chr8:27776720-27776720|A/-|frameshift_variant	ENSG00000171320|ENST00000305188|ESCO2	ENSG00000171320|ENST00000305188|ESCO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2873840332031	2	498.831852	995.649151	0.37775	0.00018843	-0.52942	-0.00026409	-0.15168	-7.566E-05	498.8315367257042	44.24	0.46873	44.315	44.174	44.643	0.075047					20	16	2	0	0	0	0.31088	1	9813	9813		28.487	0	1	173420			32824	6537	19094	19095	40159	40159					0.15115202990625676
PLERKLIK	8	Unmodified	_PLERKLIK_					0	0	0		ENSG00000171320|ENST00000305188|ESCO2;ENST00000524293.1_1_8:27633031-27634707:+|nuORF;ESCO2|p.K139Nfs*6|1|0.28|ENSG00000171320|chr8:27776720-27776720|A/-|frameshift_variant	ENSG00000171320|ENST00000305188|ESCO2	ENSG00000171320|ENST00000305188|ESCO2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	498.831852	995.649151	0.53841	0.00026858	-0.37552	-0.00018732	0.1629	8.1258E-05	498.8314559839181	44.366	0.40343	44.434	44.223	44.627	0.068573	0.059749	8.8463E-05	NaN	28.487	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173850			32825	6537	19094	19095							0.15115202990625676
PLESLWYV	8	Unmodified	_PLESLWYV_					0	0	0		ENST00000360392.4_1_14:51464439-51464655:-|nuORF	ENST00000360392.4_1_14:51464439-51464655:-|nuORF	ENST00000360392.4_1_14:51464439-51464655:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.29229736328125	2	503.765843	1005.51713	0.34914	0.00017588	-3.7481	-0.0018882	-3.399	-0.0017123	504.264243260623	72.774	0.49014	72.828	72.601	73.091	0.053841					26	17	3	0	0	0	0.34218	1	18507	18507		9.3474	0	1	66015			32826	9679	19095	19096	40160	40160					0.014595531830082109
PLETHTSL	8	Unmodified	_PLETHTSL_					0	0	0		ENST00000478188.5_1_4:57883363-57883849:+|nuORF	ENST00000478188.5_1_4:57883363-57883849:+|nuORF	ENST00000478188.5_1_4:57883363-57883849:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7532653808594	2	449.23745	896.460347	0.64463	0.00028959	-2.4456	-0.0010986	-1.8009	-0.00080904	449.23644423397116	50.855	0.58475	50.865	50.484	51.068	0.0095634					27	21	2	0	0	0	0.34218	1	11877	11877		5.2307	0	1	187270			32827	10967	19096	19097	40161	40161					0.007975056264740488
PLETHTSL	8	Unmodified	_PLETHTSL_					0	0	0		ENST00000478188.5_1_4:57883363-57883849:+|nuORF	ENST00000478188.5_1_4:57883363-57883849:+|nuORF	ENST00000478188.5_1_4:57883363-57883849:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	449.23745	896.460347	0.61072	0.00027436	-2.5806	-0.0011593	-1.9699	-0.00088495	449.2362490787599	50.801	0.53963	50.801	50.569	51.108	0	-0.048671	-0.00019187	NaN	5.2307	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147830			32828	10967	19096	19097							0.007975056264740488
PLETIQKK	8	Unmodified	_PLETIQKK_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7615661621094	2	478.792392	955.570232	0.0091425	4.3774E-06	-0.17223	-8.2462E-05	-0.16309	-7.8085E-05	478.79223100319285	25.947	0.81656	25.947	25.504	26.321	0					44	28	2	0	0	0	0.31302	1	4240	4240		29.082	2.8134	1	144810			32829	2856	19097	19098	40162	40162					0.09066930965661868
PLETIQKK	8	Unmodified	_PLETIQKK_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7616271972656	2	478.792392	955.570232	0.036365	1.7411E-05	-0.16114	-7.7151E-05	-0.12477	-5.974E-05	478.7922147799383	25.939	0.79	25.901	25.5	26.29	-0.038671					49	27	3	0	0	0	0.29394	1	4236	4236		36.127	3.8215	1	168780			32830	2856	19097	19098	40163	40163					0.09066930965661868
PLEVKRLAR	9	Unmodified	_PLEVKRLAR_					0	0	0		nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;CDK13|p.T588Nfs*31|1|0.11|ENSG00000065883|chr7:39988148-39988149|-/A|frameshift_variant	nc|ENSG00000065883|Q14004-2|CDK13	nc|ENSG00000065883|Q14004-2|CDK13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.3455810546875	2	541.345658	1080.67676	0.41595	0.00022517	-0.22786	-0.00012335	0.18809	0.00010182	541.3454673651903	49.292	0.75098	49.324	48.904	49.655	0.032043					67	26	4	0	0	0	0.23007	1	11343	11343		19.257	2.1441	1	1018200			32831	827	19098	19099	40164	40164					0.139651062508392
PLEYRVMQARL	11	Unmodified	_PLEYRVMQARL_					0	0	0			REV__nc|ENSG00000173889|Q8NDX5-4|PHC3	REV__nc|ENSG00000173889|Q8NDX5-4|PHC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7558288574219	3	459.25534	1374.74419	-0.087612	-4.0236E-05	-0.78461	-0.00036034	-0.87223	-0.00040057	459.25503575888473	33.135	0.10935	33.135	33.065	33.174	0					5	3	2	0	0	0	0.3322	1	6395	6395		2.6312	0	1	62445	+		32832	21393	19099	19100	40165	40165					0.07180768399484805
PLFDDVQI	8	Unmodified	_PLFDDVQI_					0	0	0			REV__ENSG00000163681|ENST00000671191|SLMAP	REV__ENSG00000163681|ENST00000671191|SLMAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7474060058594	2	473.74765	945.480748	0.32692	0.00015488	-0.65233	-0.00030904	-0.3254	-0.00015416	473.74727366513497	79.354	0.73555	79.416	79.092	79.828	0.061409					70	31	3	0	0	0	0.41097	1	20619	20619		18.135	0	1	440070	+		32833	17079	19100	19101	40166	40166					0.0058267628628527746
PLFDDVQI	8	Unmodified	_PLFDDVQI_					0	0	0			REV__ENSG00000163681|ENST00000671191|SLMAP	REV__ENSG00000163681|ENST00000671191|SLMAP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	473.74765	945.480748	0.32692	0.00015488	-0.65233	-0.00030904	-0.3254	-0.00015416	473.74727366513497	79.354	0.73555	79.416	79.092	79.828	0.061409	0.007864	-0.00011209	NaN	18.135	70	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440070	+		32834	17079	19100	19101							0.0058267628628527746
PLFDDVQI	8	Unmodified	_PLFDDVQI_					0	0	0			REV__ENSG00000163681|ENST00000671191|SLMAP	REV__ENSG00000163681|ENST00000671191|SLMAP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	473.74765	945.480748	0.38486	0.00018233	-0.64429	-0.00030523	-0.25943	-0.0001229	473.7472379129653	79.429	0.81893	79.4	79.128	79.947	-0.028931	-0.0079533	-0.00010449	NaN	18.135	68	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424660	+		32835	17079	19100	19101							0.0058267628628527746
PLFDSKTV	8	Unmodified	_PLFDSKTV_					0	0	0			REV__ENSG00000162148|ENST00000338608|PPP1R32	REV__ENSG00000162148|ENST00000338608|PPP1R32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.75018310546875	2	453.750193	905.485833	0.013197	5.9883E-06	0.092902	4.2154E-05	0.1061	4.8143E-05	453.75016402435244	59.56	0.48773	59.56	59.215	59.702	0					28	16	2	0	0	0	0.30517	1	14488	14488		30.225	0	1	290000	+		32836	16965	19101	19102	40167	40167					0.029309801489148413
PLFFRGPP	8	Unmodified	_PLFFRGPP_					0	0	0			REV__ENSG00000187690|ENST00000342995|EZHIP	REV__ENSG00000187690|ENST00000342995|EZHIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2921447753906	2	465.763438	929.512323	-0.16128	-7.5119E-05	3.4059	0.0015863	3.2446	0.0015112	465.76614445326555	18.698	0.44368	18.639	18.402	18.846	-0.058174					24	15	2	0	0	0	0.34218	1	2048	2048		9.3474	1.4373	1	76660	+		32837	18515	19102	19103	40168	40168					0.044747138308935064
PLFHRGSLPL	10	Unmodified	_PLFHRGSLPL_					0	0	0			REV__ENST00000574857.1_1_17:2275854-2276226:+|nuORF	REV__ENST00000574857.1_1_17:2275854-2276226:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.3325805664062	2	568.832383	1135.65021	-0.18645	-0.00010606	2.9671	0.0016878	2.7807	0.0015817	568.8343708063461	12.104	0.16781	12.036	11.951	12.118	-0.068059					13	8	2	0	0	0	0.32132	1	35	35		1.4819	0.8804	1	22984	+		32838	22434	19103	19104	40169	40169					0.08781417359523402
PLFHRRVWL	9	Unmodified	_PLFHRRVWL_					0	0	0			REV__ENST00000368199.7_1_1:156786591-156786630:-|nuORF	REV__ENST00000368199.7_1_1:156786591-156786630:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.2046203613281	3	408.576854	1222.70873	0.025022	1.0223E-05	4.2775	0.0017477	4.3026	0.0017579	408.57851445037636	37.655	0.16568	37.753	37.654	37.82	0.097527					7	5	2	0	0	0	0.24913	1	7776	7776		8.1555	3.7494	1	61977	+		32839	20332	19104	19105	40170	40170					0.10628518724638525
PLFHTETI	8	Unmodified	_PLFHTETI_					0	0	0		DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant;ENSG00000197653|ENST00000673944|DNAH10;nc|ENSG00000197653|Q8IVF4|DNAH10;ENST00000467219.5_1_12:124265674-124298205:+|nuORF;nc|ENSG00000197653|Q8IVF4-2|DNAH10	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	DNAH10|p.Q3799Rfs*47|1|0.35|ENSG00000197653|chr12:123924415-123924415|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.255859375	2	479.255643	956.496732	0.13579	6.5077E-05	1.3099	0.00062776	1.4457	0.00069284	479.25597837651264	95.515	0.43092	95.593	95.446	95.877	0.077415					53	33	2	0	0	0	0.42446	1	25517	25517		14.582	0.67564	1	201370			32840	267	19105	19106	40171	40171					0.016743825231969822
PLFIFQLL	8	Unmodified	_PLFIFQLL_					0	0	0		ENSG00000188991|ENST00000344941|SLC15A5	ENSG00000188991|ENST00000344941|SLC15A5	ENSG00000188991|ENST00000344941|SLC15A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2867736816406	2	495.804771	989.59499	0.39105	0.00019388	-0.2193	-0.00010873	0.17175	8.5155E-05	495.80471128778055	64.761	0.69411	64.854	64.633	65.327	0.09288					34	25	2	0	0	0	0.33995	1	16186	16186		15.768	1.1865	1	211460			32841	7791	19106	19107	40172	40172					0.09977610839052886
PLFIFQLL	8	Unmodified	_PLFIFQLL_					0	0	0		ENSG00000188991|ENST00000344941|SLC15A5	ENSG00000188991|ENST00000344941|SLC15A5	ENSG00000188991|ENST00000344941|SLC15A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2868957519531	2	495.804771	989.59499	0.2367	0.00011736	-0.18127	-8.9874E-05	0.055436	2.7486E-05	495.8046942699961	64.898	0.82693	64.886	64.521	65.348	-0.011337					39	29	2	0	0	0	0.33995	1	16222	16222		15.768	1.1865	1	161550			32842	7791	19106	19107	40173	40173					0.09977610839052886
PLFIHIPNNSL	11	Unmodified	_PLFIHIPNNSL_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2405700683594	3	422.239796	1263.69756	-0.19858	-8.3848E-05	1.3468	0.00056868	1.1482	0.00048483	422.2406108211074	26.081	0.96043	26.081	25.769	26.729	0					103	33	4	0	0	0	0.39698	1	4276	4276		11.631	1.3161	1	980210			32843	3530	19107	19108	40174	40174					0.0762565183983952
PLFKEFRIYGT	11	Unmodified	_PLFKEFRIYGT_					0	0	0			REV__nc|ENSG00000203666|Q5VUJ9|EFCAB2	REV__nc|ENSG00000203666|Q5VUJ9|EFCAB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.28485107421875	3	457.587084	1369.73942	0.141	6.452E-05	-0.3941	-0.00018034	-0.2531	-0.00011582	457.586783065229	40.926	0.68596	41.018	40.773	41.459	0.092514					55	25	3	0	0	0	0.33025	1	8738	8738		6.2344	0	1	452750	+		32844	23165	19108	19109	40175	40175					0.06934207528365732
PLFKNFII	8	Unmodified	_PLFKNFII_					0	0	0		nc|ENSG00000166762|Q96P56-4|CATSPER2;ENST00000415968.2_1_15:43932485-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-3|CATSPER2;ENST00000469461.5_1_15:43927692-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-2|CATSPER2;ENSG00000166762|ENST00000396879|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2947998046875	2	496.302396	990.590239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.104	1	79.075	78.575	79.575	-0.028931								0	0	0	0.34752	1	20481	20481		15.768	1.1865	1				32845	6110	19109	19110	40176	40176					0.09456726696282658
PLFLFWSL	8	Unmodified	_PLFLFWSL_					0	0	0		ENST00000288050.8_1_16:70190827-70190911:+|nuORF	ENST00000288050.8_1_16:70190827-70190911:+|nuORF	ENST00000288050.8_1_16:70190827-70190911:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.8035583496094	2	511.789121	1021.56369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.794	1	28.794	28.294	29.294	0								0	0	0	0.35985	1	5069	5069		10.183	1.438	1				32846	9145	19110	19111	40177	40177					0.053770378049534884
PLFLQQVE	8	Unmodified	_PLFLQQVE_					0	0	0		nc|ENSG00000134762|Q14574-2|DSC3;ENSG00000134762|ENST00000360428|DSC3	nc|ENSG00000134762|Q14574-2|DSC3	nc|ENSG00000134762|Q14574-2|DSC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.2896423339844	2	487.271293	972.528032	0.25813	0.00012578	0.82644	0.0004027	1.0846	0.00052848	487.27207099119755	68.308	0.30646	68.308	68.022	68.329	0					16	11	2	0	0	0	0.31375	1	17199	17199		8.5933	0	1	210510			32847	3809	19111	19112	40178	40178					0.040669555572890204
PLFLRNLL	8	Unmodified	_PLFLRNLL_					0	0	0			REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.8263854980469	2	493.313295	984.612037	0.42737	0.00021083	-0.092112	-4.544E-05	0.33526	0.00016539	493.3132275660765	61.051	0.54068	61.051	60.713	61.254	0					30	19	2	0	0	0	0.3366	1	15029	15029		18.135	0	1	861100	+		32848	13518	19112	19113	40179	40179					0.11911531444843604
PLFLSDVN	8	Unmodified	_PLFLSDVN_					0	0	0			REV__VHL|p.G144Sfs*14|1|0.3|ENSG00000134086|chr3:10146600-10146603|GACG/-|frameshift_variant	REV__VHL|p.G144Sfs*14|1|0.3|ENSG00000134086|chr3:10146600-10146603|GACG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2776794433594	2	452.742368	903.470183	0.12289	5.5637E-05	1.8974	0.00085904	2.0203	0.00091468	452.74255378321965	70.03	1.0618	70.097	69.518	70.579	0.06604					49	37	2	0	0	0	0.3366	1	17724	17724		12.532	0	1	139820	+		32849	23354	19113	19114	40180	40180					0.014586936318551125
PLFLWVAAK	9	Unmodified	_PLFLWVAAK_					0	0	0			REV__ENST00000469763.5_1_7:102065580-102065832:+|nuORF	REV__ENST00000469763.5_1_7:102065580-102065832:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7138671875	2	522.81567	1043.61679	0.15812	8.2667E-05	-0.17864	-9.3394E-05	-0.020518	-1.0727E-05	522.8157884484857	31.263	0.49613	31.306	31.078	31.574	0.042364					33	17	2	0	0	0	0.24739	1	5845	5845		13.508	1.2672	1	252890	+		32850	21345	19114	19115	40181	40181					0.09672415587579053
PLFLYWLE	8	Unmodified	_PLFLYWLE_					0	0	0		ENST00000422936.5_1_2:32117156-32168392:-|nuORF	ENST00000422936.5_1_2:32117156-32168392:-|nuORF	ENST00000422936.5_1_2:32117156-32168392:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7385864257812	2	540.791861	1079.56917	0.63919	0.00034567	0.49276	0.00026648	1.132	0.00061215	540.792105151051	71.142	0.70438	71.117	70.804	71.509	-0.024872					36	25	2	0	0	0	0.34046	1	18119	18119		14.582	0	1	654660			32851	10385	19115	19116	40182	40182					0.03256716596752085
PLFNPVVYT	9	Unmodified	_PLFNPVVYT_					0	0	0		ENSG00000182634|ENST00000641585|OR10G7	ENSG00000182634|ENST00000641585|OR10G7	ENSG00000182634|ENST00000641585|OR10G7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3052368164062	2	525.286943	1048.55933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.262	1	86.253	85.753	86.753	-0.0090027								0	0	0	0.23367	1	22679	22679		11.64	1.5664	1				32852	7305	19116	19117	40183	40183					0.03699528591369017
PLFNWNQL	8	Unmodified	_PLFNWNQL_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7910766601562	2	516.269084	1030.52362	0.58774	0.00030343	0.11822	6.1035E-05	0.70596	0.00036447	516.2691370343379	84.303	0.42593	84.303	84.186	84.612	0					22	15	2	0	0	0	0.34185	1	22143	22143		10.183	0.83596	1	113310	+		32853	16793	19117	19118	40184	40184					0.009574911343634085
PLFPDTDYKP	10	Unmodified	_PLFPDTDYKP_					0	0	0		ENSG00000113356|ENST00000651687|POLR3G	ENSG00000113356|ENST00000651687|POLR3G	ENSG00000113356|ENST00000651687|POLR3G	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.25927734375	2	596.797872	1191.58119	0.45418	0.00027105	-3.4696	-0.0020707	-3.0154	-0.0017996	596.7961159836807	43.268	0.26551	43.268	43.149	43.414	0					14	9	2	0	0	0	0.30586	1	9518	9518		19.257	5.7491	1	192040			32854	2495	19118	19119	40185	40185					-0.006937114507309161
PLFQPYSLI	9	Unmodified	_PLFQPYSLI_					0	0	0			REV__HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|27|1|sense	REV__HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|27|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7974243164062	2	539.302593	1076.59063	0.54032	0.0002914	0.16862	9.0938E-05	0.70894	0.00038233	539.302536886199	90.088	1.5361	90.088	89.41	90.946	0					277	100	4	0	0	0	0.32415	1	23716	23716		5.2307	0	1	2534900	+		32855	22741	19119	19120	40186	40186					0.0554010162547911
PLFQQKVEV	9	Unmodified	_PLFQQKVEV_					0	0	0		ENST00000373212.5_1_X:80553719-80553785:+|nuORF	ENST00000373212.5_1_X:80553719-80553785:+|nuORF	ENST00000373212.5_1_X:80553719-80553785:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7924194335938	2	544.310949	1086.60735	0.5092	0.00027716	-0.96832	-0.00052707	-0.45912	-0.0002499	544.3103890986412	57.332	0.71512	57.314	56.867	57.582	-0.017197					36	25	2	0	0	0	0.24688	1	13867	13867		10.074	1.3285	1	291880			32856	9863	19120	19121	40187	40187					0.06750602511419856
PLFRFVERKAF	11	Unmodified	_PLFRFVERKAF_					0	0	0			REV__ENST00000399438.7_2_5:64920774-64920858:+|nuORF	REV__ENST00000399438.7_2_5:64920774-64920858:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.9114990234375	3	470.60659	1408.79794	0.28331	0.00013333	-0.0063639	-2.9949E-06	0.27695	0.00013033	470.606425423652	51.039	1.2122	51.086	50.63	51.842	0.046574					112	44	4	0	0	0	0.33182	1	12089	12089		3.0723	0	1	1183200	+		32857	20690	19121	19122	40188	40188					0.10989308893499583
PLFRNWAI	8	Unmodified	_PLFRNWAI_					0	0	0		ENSG00000168310|ENST00000393593|IRF2;nc|ENSG00000168310|P14316-2|IRF2;ENST00000512020.5_1_4:185339662-185350218:-|nuORF	ENSG00000168310|ENST00000393593|IRF2	ENSG00000168310|ENST00000393593|IRF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3115539550781	2	508.787444	1015.56034	0.27179	0.00013828	-0.38174	-0.00019422	-0.10995	-5.5941E-05	508.78713348227757	63.204	0.25431	63.195	62.963	63.217	-0.0085526					14	8	2	0	0	0	0.32778	1	15610	15610		20.871	5.024	1	369230			32858	6267	19122	19123	40189	40189					0.053177877509369864
PLFTKLIFTK	10	Unmodified	_PLFTKLIFTK_					0	0	0			REV__nc|ENSG00000131748|Q14849-2|STARD3	REV__nc|ENSG00000131748|Q14849-2|STARD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.25347900390625	3	403.253154	1206.73763	-1.4866	-0.00059947	0.83191	0.00033547	-0.65467	-0.000264	403.25373624449105	34.779	0.93967	34.779	34.5	35.439	0					69	33	3	0	0	0	0.37568	1	6870	6870		7.9454	0.46833	1	1076100	+		32859	15533	19123	19124	40190	40190					0.14253198510414222
PLFTNGCEK	9	Unmodified	_PLFTNGCEK_					0	0	0			REV__ENSG00000197863|ENST00000356725|ZNF790	REV__ENSG00000197863|ENST00000356725|ZNF790	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.31622314453125	2	504.744585	1007.47462	0.73648	0.00037173	2.0782	0.001049	2.8147	0.0014207	504.7454813139449	36.378	0.37388	36.464	36.333	36.707	0.08625					17	12	2	0	0	0	0.22596	1	7424	7424		10.824	1.4765	1	156680	+		32860	18773	19124	19125	40191	40191					-0.028821652168858236
PLFVHDPSSV	10	Unmodified	_PLFVHDPSSV_					0	0	0			REV__nc|ENSG00000138448|P06756-3|ITGAV	REV__nc|ENSG00000138448|P06756-3|ITGAV	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8035888671875	2	549.284931	1096.55531	0.53816	0.00029561	1.2555	0.00068963	1.7937	0.00098524	549.287006692992	23.916	0.51514	23.877	23.45	23.965	-0.038927					30	17	3	0	0	0	0.31847	1	3551	3551		6.7232	0.99131	1	40360	+		32861	15930	19125	19126	40192	40192					0.010894390976545765
PLFVHDPSSV	10	Unmodified	_PLFVHDPSSV_					0	0	0			REV__nc|ENSG00000138448|P06756-3|ITGAV	REV__nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	549.284931	1096.55531	0.24603	0.00013514	2.4205	0.0013296	2.6666	0.0014647	549.2865571004072	23.617	0.43888	23.617	23.448	23.887	0	-0.11317	0.00086255	NaN	6.7232	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46347	+		32862	15930	19125	19126							0.010894390976545765
PLFVNFLF	8	Unmodified	_PLFVNFLF_					0	0	0			REV__nc|ENSG00000174600|Q99788-2|CMKLR1	REV__nc|ENSG00000174600|Q99788-2|CMKLR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7817687988281	2	498.781296	995.54804	0.26577	0.00013256	0.84221	0.00042008	1.108	0.00055264	498.7816827394106	74.058	1.7611	74.058	72.613	74.374	0					98	61	2	0	0	0	0.44842	1	18972	18972		6.3541	0	1	762850	+		32863	17843	19126	19127	40193	40193					0.05008751287903124
PLFVNFLF	8	Unmodified	_PLFVNFLF_					0	0	0			REV__nc|ENSG00000174600|Q99788-2|CMKLR1	REV__nc|ENSG00000174600|Q99788-2|CMKLR1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.781296	995.54804	0.32336	0.00016129	0.77885	0.00038848	1.1022	0.00054976	498.78164320191956	74.066	2.0217	74.035	72.395	74.416	-0.030655	-0.031352	-9.6441E-05	NaN	6.3541	101	72	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1050800	+		32864	17843	19126	19127							0.05008751287903124
PLFYLEGL	8	Unmodified	_PLFYLEGL_					0	0	0			REV__ENSG00000247626|ENST00000282276|MARS2	REV__ENSG00000247626|ENST00000282276|MARS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.26318359375	2	476.262936	950.51132	0.41921	0.00019965	0.50048	0.00023836	0.91968	0.00043801	476.26287448658394	86.14	0.87083	86.131	85.873	86.744	-0.0090103					85	33	3	0	0	0	0.39956	1	22689	22689		19.439	1.304	1	479520	+		32865	19209	19127	19128	40194	40194					0.03408454671330219
PLFYLEGL	8	Unmodified	_PLFYLEGL_					0	0	0			REV__ENSG00000247626|ENST00000282276|MARS2	REV__ENSG00000247626|ENST00000282276|MARS2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	476.262936	950.51132	0.33777	0.00016087	0.55741	0.00026547	0.89517	0.00042634	476.26293849919443	86.193	0.8029	86.193	85.846	86.649	0	0.035923	9.6751E-06	NaN	19.439	74	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	410760	+		32866	19209	19127	19128							0.03408454671330219
PLFYLEGL	8	Unmodified	_PLFYLEGL_					0	0	0			REV__ENSG00000247626|ENST00000282276|MARS2	REV__ENSG00000247626|ENST00000282276|MARS2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	476.262936	950.51132	0.41921	0.00019965	0.50048	0.00023836	0.91968	0.00043801	476.26287448658394	86.14	0.87083	86.131	85.873	86.744	-0.0090103	-0.026486	-4.4552E-05	NaN	19.439	85	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	479520	+		32867	19209	19127	19128							0.03408454671330219
PLFYLSIPK	9	Unmodified	_PLFYLSIPK_					0	0	0		ENST00000498486.1_1_2:172336502-172337621:+|nuORF	ENST00000498486.1_1_2:172336502-172337621:+|nuORF	ENST00000498486.1_1_2:172336502-172337621:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.3029174804688	2	539.320786	1076.62702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.791	1	89.791	89.291	90.291	-0.00080872								0	0	0	0.22789	1	23763	23763		13.508	0.97634	1				32868	11254	19128	19129	40195	40195					0.0917697852216861
PLGAGSPAPLP	11	Unmodified	_PLGAGSPAPLP_					0	0	0		ENSG00000141744|ENST00000269582|PNMT	ENSG00000141744|ENST00000269582|PNMT	ENSG00000141744|ENST00000269582|PNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.29254150390625	2	488.776742	975.538931	0.3733	0.00018246	-0.51641	-0.00025241	-0.14312	-6.9951E-05	488.77622880419005	30.272	0.56047	30.3	30.02	30.58	0.027946					39	19	3	0	0	0	0.34542	1	5605	5605		18.146	4.2403	1	248110			32869	4409	19129	19130	40196	40196					0.05018357931567152
PLGDLSRGYQE	11	Unmodified	_PLGDLSRGYQE_					0	0	0		ENSG00000121634|ENST00000369235|GJA8	ENSG00000121634|ENST00000369235|GJA8	ENSG00000121634|ENST00000369235|GJA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.31982421875	2	617.806759	1233.59897	0.45398	0.00028047	-0.32026	-0.00019786	0.13372	8.2616E-05	617.8067746969273	45.461	0.45528	45.461	45.238	45.694	0					26	16	2	0	0	0	0.3429	1	10187	10187		18.373	2.224	1	266730			32870	3001	19130	19131	40197	40197					-0.008489961958503045
PLGDLSRGYQE	11	Unmodified	_PLGDLSRGYQE_					0	0	0		ENSG00000121634|ENST00000369235|GJA8	ENSG00000121634|ENST00000369235|GJA8	ENSG00000121634|ENST00000369235|GJA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	617.7867431640625	2	617.806759	1233.59897	0.31382	0.00019388	0.15926	9.8393E-05	0.47308	0.00029228	617.8068201492515	45.258	0.50343	45.323	45.119	45.623	0.065052					28	18	2	0	0	0	0.35271	1	10144	10144		17.443	8.6972	1	251770			32871	3001	19130	19131	40198	40198					-0.008489961958503045
PLGGAQSSLH	10	Unmodified	_PLGGAQSSLH_					0	0	0			REV__nc|ENSG00000009790|Q9Y228-3|TRAF3IP3	REV__nc|ENSG00000009790|Q9Y228-3|TRAF3IP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.31304931640625	2	483.753798	965.493044	0.43643	0.00021113	2.0037	0.00096927	2.4401	0.0011804	483.75588582675965	79.059	0.19661	79.059	78.906	79.103	0					11	8	2	0	0	0	0.31395	1	20495	20495		12.532	1.4171	1	44161	+		32872	13408	19131	19132	40199	40199					0.008917127493305088
PLGGGSPPLL	10	Unmodified	_PLGGGSPPLL_					0	0	0			REV__ENSG00000213023|ENST00000600079|SYT3	REV__ENSG00000213023|ENST00000600079|SYT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.7398376464844	2	454.26601	906.517468	0.34504	0.00015674	-1.1765	-0.00053444	-0.83144	-0.00037769	454.2653416546937	64.381	0.4337	64.474	64.284	64.718	0.09288					23	15	2	0	0	0	0.31051	1	15970	15970		11.64	5.8799	1	118370	+		32873	19031	19132	19133	40200	40200					0.06046972902856851
PLGGILEPAL	10	Unmodified	_PLGGILEPAL_					0	0	0			REV__ENST00000490321.1_1_9:77702731-77703044:-|nuORF	REV__ENST00000490321.1_1_9:77702731-77703044:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.82122802734375	2	490.294768	978.574983	0.75398	0.00036967	-0.90042	-0.00044147	-0.14644	-7.1797E-05	490.29416925000066	50.168	0.36966	50.189	49.939	50.309	0.020691					18	13	2	0	0	0	0.29519	1	11567	11567		21.747	13.591	1	164740	+		32874	21600	19133	19134	40201	40201					0.08483815108411363
PLGGILEPAL	10	Unmodified	_PLGGILEPAL_					0	0	0			REV__ENST00000490321.1_1_9:77702731-77703044:-|nuORF	REV__ENST00000490321.1_1_9:77702731-77703044:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	490.294768	978.574983	0.75082	0.00036812	-1.0471	-0.0005134	-0.29631	-0.00014528	490.2940191918458	50.129	0.23452	50.174	50.084	50.318	0.044891	-0.007561	-0.00011826	NaN	21.747	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188160	+		32875	21600	19133	19134							0.08483815108411363
PLGGLILSI	9	Unmodified	_PLGGLILSI_					0	0	0			REV__ENSG00000170989|ENST00000305352|S1PR1	REV__ENSG00000170989|ENST00000305352|S1PR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7865295410156	2	441.786579	881.558604	0.5434	0.00024007	-0.32718	-0.00014454	0.21623	9.5527E-05	441.7863685470176	78.442	0.80938	78.442	78.12	78.929	0					61	30	3	0	0	0	0.10075	1	20272	20272		38.151	2.107	1	455900	+		32876	17612	19134	19135	40202	40202					0.11308733942325944
PLGGLILSI	9	Unmodified	_PLGGLILSI_					0	0	0			REV__ENSG00000170989|ENST00000305352|S1PR1	REV__ENSG00000170989|ENST00000305352|S1PR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7865295410156	2	441.786579	881.558604	0.38997	0.00017228	-0.21946	-9.6956E-05	0.17051	7.5327E-05	441.78644098014917	78.41	1.031	78.468	78.058	79.089	0.058151					67	39	3	0	0	0	0.06608	1	20236	20236		46.921	4.8263	1	473900	+		32877	17612	19134	19135	40203	40203					0.11308733942325944
PLGGLILSI	9	Unmodified	_PLGGLILSI_					0	0	0			REV__ENSG00000170989|ENST00000305352|S1PR1	REV__ENSG00000170989|ENST00000305352|S1PR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7865905761719	2	441.786579	881.558604	0.63888	0.00028225	-0.48558	-0.00021452	0.1533	6.7727E-05	441.78629120419845	78.425	0.92393	78.394	78.009	78.933	-0.030434					70	35	3	0	0	0	0.155	1	20255	20255		30.225	1.738	1	413530	+		32878	17612	19134	19135	40204	40204					0.11308733942325944
PLGGRFFRKFL	11	Unmodified	_PLGGRFFRKFL_					0	0	0		ENST00000585563.5_1_19:38806312-38806369:-|nuORF	ENST00000585563.5_1_19:38806312-38806369:-|nuORF	ENST00000585563.5_1_19:38806312-38806369:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	446.7787170410156	3	446.599547	1336.77681	0.36057	0.00016103	-0.020748	-9.266E-06	0.33983	0.00015177	446.5993974628846	49.472	0.81821	49.472	49.135	49.953	0					71	29	3	0	0	0	0.33202	1	11363	11363		2.8433	0.93691	1	556100			32879	12107	19135	19136	40205	40205					0.1218934358464594
PLGHGAAVPAL	11	Unmodified	_PLGHGAAVPAL_					0	0	0		ENST00000451813.6_2_20:33590304-33590487:-|nuORF	ENST00000451813.6_2_20:33590304-33590487:-|nuORF	ENST00000451813.6_2_20:33590304-33590487:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.28253173828125	2	501.790184	1001.56581	0.65252	0.00032743	-0.17961	-9.0125E-05	0.47291	0.0002373	501.79018341649675	50.945	1.7227	50.945	49.953	51.676	0					105	63	3	0	0	0	0.21628	1	11842	11842		36.044	5.4077	1	1327300			32880	10651	19136	19137	40206	40206					0.06509466542752307
PLGIASGKLE	10	Unmodified	_PLGIASGKLE_					0	0	0			REV__CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant	REV__CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.8072509765625	2	492.78985	983.565146	0.52003	0.00025627	0.052534	2.5888E-05	0.57256	0.00028215	492.7897314234297	63.942	1.3838	64.035	63.362	64.746	0.092876					196	49	5	0	0	0	0.29978	1	16013	16013		20.454	0	1	6727600	+		32881	13290	19137	19138	40207	40207					0.07270627103059724
PLGIIYYTI	9	Unmodified	_PLGIIYYTI_					0	0	0			REV__ENSG00000180638|ENST00000433844|SLC47A2	REV__ENSG00000180638|ENST00000433844|SLC47A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3048095703125	2	526.804968	1051.59538	0.46158	0.00024316	-2.2768	-0.0011994	-1.8152	-0.00095625	527.3046090233084	57.808	1.0176	57.791	57.337	58.355	-0.0172					80	37	3	0	0	0	0.19839	1	13948	13948		28.487	0	1	922940	+		32882	18115	19138	19139	40208	40208					0.07164985768235965
PLGIIYYTI	9	Unmodified	_PLGIIYYTI_					0	0	0			REV__ENSG00000180638|ENST00000433844|SLC47A2	REV__ENSG00000180638|ENST00000433844|SLC47A2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	526.804968	1051.59538	0.47252	0.00024892	-2.7391	-0.001443	-2.2666	-0.001194	527.304502076404	57.635	0.81653	57.721	57.372	58.189	0.085621	-0.03508	-0.0002122	NaN	28.487	72	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	994960	+		32883	18115	19138	19139							0.07164985768235965
PLGKLTSLF	9	Unmodified	_PLGKLTSLF_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.76275634765625	2	488.29731	974.580068	0.36771	0.00017955	-0.049443	-2.4143E-05	0.31826	0.00015541	488.2971338746957	63.154	0.26881	63.25	63.096	63.365	0.095722					12	9	2	0	0	0	0.23783	1	15637	15637		18.135	5.6034	1	78820			32884	1153	19139	19140	40209	40209					0.09176118971049618
PLGLKELAEKR	11	Unmodified	_PLGLKELAEKR_					0	0	0			REV__nc|ENSG00000182795|Q9BW04-2|SARG	REV__nc|ENSG00000182795|Q9BW04-2|SARG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.3806762695312	2	627.382437	1252.75032	-0.03381	-2.1212E-05	-0.44458	-0.00027892	-0.47839	-0.00030013	627.3817675327402	103.2	0.67025	103.2	102.88	103.55	0					238	97	3	0	0	0	0.44192	6	27384	27384;27392;27400;27437;27473;27506		5.7319	0	1	27440000	+		32885	18219	19140	19141	40210;40211;40212;40213;40214;40215	40210					0.13405609902633842
PLGLKELAEKR	11	Unmodified	_PLGLKELAEKR_					0	0	0			REV__nc|ENSG00000182795|Q9BW04-2|SARG	REV__nc|ENSG00000182795|Q9BW04-2|SARG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.3806762695312	2	627.382437	1252.75032	-0.033487	-2.1009E-05	-0.6194	-0.0003886	-0.65289	-0.00040961	627.3816317037266	103.61	1.0906	103.61	103.49	104.58	0					325	150	3	0	0	0	0.44192	3	27613	27552;27580;27613		5.7319	0	1	28103000	+		32886	18219	19140	19141	40216;40217;40218	40218					0.13405609902633842
PLGLKELAEKR	11	Unmodified	_PLGLKELAEKR_					0	0	0			REV__nc|ENSG00000182795|Q9BW04-2|SARG	REV__nc|ENSG00000182795|Q9BW04-2|SARG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.3814086914062	2	627.382437	1252.75032	-0.14989	-9.4041E-05	-0.15927	-9.9924E-05	-0.30916	-0.00019396	627.3821091532982	103.22	0.65375	103.23	102.81	103.46	0.0082626					266	93	3	0	0	0	0.44192	6	27451	27361;27393;27424;27451;27462;27487		5.7319	0	1	27999000	+		32887	18219	19140	19141	40219;40220;40221;40222;40223;40224	40222					0.13405609902633842
PLGLKELAEKR	11	Unmodified	_PLGLKELAEKR_					0	0	0			REV__nc|ENSG00000182795|Q9BW04-2|SARG	REV__nc|ENSG00000182795|Q9BW04-2|SARG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.8844604492188	2	627.382437	1252.75032	-0.14775	-9.2694E-05	-0.40648	-0.00025502	-0.55423	-0.00034772	627.3819610401042	103.66	0.95815	103.67	103.45	104.41	0.0082626					353	133	3	0	0	0	0.46277	9	27494	27494;27502;27520;27525;27549;27558;27590;27625;27689		2.9952	0	1	25439000	+		32888	18219	19140	19141	40225;40226;40227;40228;40229;40230;40231;40232;40233	40225					0.13405609902633842
PLGLLPTV	8	Unmodified	_PLGLLPTV_					0	0	0		ENST00000322213.8_1_X:53406645-53406816:-|nuORF	ENST00000322213.8_1_X:53406645-53406816:-|nuORF	ENST00000322213.8_1_X:53406645-53406816:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2601623535156	2	405.260197	808.50584	-0.065671	-2.6614E-05	0.077981	3.1602E-05	0.01231	4.9886E-06	405.2601437627742	70.609	0.44511	70.609	70.378	70.823	0					32	15	3	0	0	0	0.094342	1	17904	17904		75.128	0	1	357610			32889	9387	19141	19142	40234	40234					0.09392775879507553
PLGLLPTV	8	Unmodified	_PLGLLPTV_					0	0	0		ENST00000322213.8_1_X:53406645-53406816:-|nuORF	ENST00000322213.8_1_X:53406645-53406816:-|nuORF	ENST00000322213.8_1_X:53406645-53406816:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2602233886719	2	405.260197	808.50584	-0.012479	-5.0572E-06	0.027133	1.0996E-05	0.014654	5.9387E-06	405.2601113107956	70.619	0.53201	70.595	70.301	70.833	-0.024872					33	18	2	0	0	0	0.28326	1	17891	17891		36.466	0	1	431100			32890	9387	19141	19142	40235	40235					0.09392775879507553
PLGLRKKGF	9	Unmodified	_PLGLRKKGF_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.81341552734375	2	508.324194	1014.63383	0.32174	0.00016355	-0.60521	-0.00030764	-0.28347	-0.00014409	508.3237725796672	58.3	0.30195	58.385	58.222	58.524	0.085621					15	10	2	0	0	0	0.25291	1	14079	14079		5.2307	0	1	149180	+		32891	19226	19142	19143	40236	40236					0.1271033619342461
PLGLSLKLFP	10	Unmodified	_PLGLSLKLFP_					0	0	0			REV__ENSG00000177455|ENST00000538922|CD19	REV__ENSG00000177455|ENST00000538922|CD19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8079833984375	2	542.841885	1083.66922	0.51372	0.00027887	-0.52647	-0.00028579	-0.012755	-6.9239E-06	542.8413697925508	79.727	0.27343	79.727	79.524	79.797	0					12	10	2	0	0	0	0.32009	1	20683	20683		1.6526	0.17072	1	78274	+		32892	17990	19143	19144	40237	40237					0.13072953930532094
PLGNAAWLIE	10	Unmodified	_PLGNAAWLIE_					0	0	0			REV__ENSG00000013523|ENST00000251089|ANGEL1	REV__ENSG00000013523|ENST00000251089|ANGEL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2953491210938	2	542.295299	1082.57605	0.67349	0.00036523	-0.22355	-0.00012123	0.44994	0.000244	542.2952279458642	47.488	0.4509	47.536	47.321	47.772	0.04752					42	16	3	0	0	0	0.33817	1	10787	10787		14.838	0	1	747720	+		32893	13445	19144	19145	40238	40238					0.03806029477323136
PLGNFTAPPTY	11	Unmodified	_PLGNFTAPPTY_					0	0	0		nc|ENSG00000171992|Q8N3V7-3|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO;ENSG00000171992|ENST00000307662|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.2786254882812	2	589.298039	1176.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.526	1	22.481	21.981	22.981	-0.044867								0	0	0	0.37609	1	3169	3169		2.4985	0.19575	1				32894	12837	19145	19146	40239	40239					0.0002970826915316138
PLGPFGQP	8	Unmodified	_PLGPFGQP_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.207275390625	2	406.718696	811.422839	-0.34156	-0.00013892	0.4239	0.00017241	0.082341	3.3489E-05	406.718712139347	62.062	0.53994	62.159	61.817	62.357	0.096985					28	19	2	0	0	0	0.34092	1	15242	15242		8.5933	2.8329	1	223910	+		32895	13900	19146	19147	40240	40240					0.009584591515249485
PLGPFGQP	8	Unmodified	_PLGPFGQP_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.71868896484375	2	406.718696	811.422839	-0.16368	-6.6573E-05	-0.14881	-6.0522E-05	-0.31249	-0.0001271	406.7185492849131	62.083	0.56909	62.074	61.757	62.327	-0.0085564					33	20	3	0	0	0	0.33916	1	15268	15268		26.341	5.4701	1	263900	+		32896	13900	19146	19147	40241	40241					0.009584591515249485
PLGPFGQP	8	Unmodified	_PLGPFGQP_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	406.718696	811.422839	-0.11131	-4.5271E-05	-0.16245	-6.607E-05	-0.27375	-0.00011134	406.71859789769593	62.078	0.56096	62.078	61.836	62.396	0	-0.02566	-4.8088E-05	NaN	26.341	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155120	+		32897	13900	19146	19147							0.009584591515249485
PLGPFGQP	8	Unmodified	_PLGPFGQP_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	406.718696	811.422839	-0.16368	-6.6573E-05	-0.14881	-6.0522E-05	-0.31249	-0.0001271	406.7185492849131	62.083	0.56909	62.074	61.757	62.327	-0.0085564	-0.02961	-3.6993E-05	NaN	26.341	33	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263900	+		32898	13900	19146	19147							0.009584591515249485
PLGPRAQLL	9	Unmodified	_PLGPRAQLL_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.80096435546875	2	482.800552	963.58655	0.43505	0.00021004	0.50556	0.00024409	0.94061	0.00045413	482.80073189724874	46.708	0.6534	46.762	46.602	47.256	0.054375					32	22	3	0	0	0	0.22883	1	10596	10596		19.439	2.4967	1	290610			32899	1374	19147	19148	40242	40242					0.10330056922407493
PLGPSLLL	8	Unmodified	_PLGPSLLL_					0	0	0		ENST00000340438.5_1_X:51486541-51486646:+|nuORF	ENST00000340438.5_1_X:51486541-51486646:+|nuORF	ENST00000340438.5_1_X:51486541-51486646:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2601013183594	2	405.260197	808.50584	-0.032613	-1.3217E-05	0.16198	6.5643E-05	0.12937	5.2427E-05	405.26013315893414	71.524	2.5373	71.524	70.797	73.335	0					206	91	3	0	0	0	0.073545	1	18130	18130		67.035	0	1	2314400			32900	9515	19148	19149	40243	40243					0.09392775879518922
PLGPSLLL	8	Unmodified	_PLGPSLLL_					0	0	0		ENST00000340438.5_1_X:51486541-51486646:+|nuORF	ENST00000340438.5_1_X:51486541-51486646:+|nuORF	ENST00000340438.5_1_X:51486541-51486646:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.260009765625	2	405.260197	808.50584	0.018334	7.43E-06	0.13161	5.3336E-05	0.14994	6.0766E-05	405.26013092988205	71.528	2.5221	71.501	70.771	73.293	-0.027275					211	90	3	0	0	0	0.049524	3	18087	18087;18182;18277		78.445	0	1	2035300			32901	9515	19148	19149	40244;40245;40246	40244					0.09392775879518922
PLGPWGKK	8	Unmodified	_PLGPWGKK_					0	0	0		ENST00000533173.1_1_8:145677215-145677383:-|nuORF	ENST00000533173.1_1_8:145677215-145677383:-|nuORF	ENST00000533173.1_1_8:145677215-145677383:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7554931640625	2	441.763438	881.512323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.715	1	20.605	20.105	21.105	-0.11003								0	0	0	0.36336	1	2624	2624		8.5933	2.8329	1				32902	11645	19149	19150	40247	40247					0.06682713830900866
PLGQRPLL	8	Unmodified	_PLGQRPLL_					0	0	0			REV__ENST00000219611.6_1_16:604006-604486:+|nuORF	REV__ENST00000219611.6_1_16:604006-604486:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.2818908691406	2	447.281995	892.549437	0.15985	7.1496E-05	-0.19691	-8.8075E-05	-0.037066	-1.6579E-05	447.2818228425065	38.559	2.299	38.65	38.042	40.341	0.090881					175	82	3	0	0	0	0.12267	1	8165	8165		56.541	9.6204	1	734590	+		32903	19420	19150	19151	40248	40248					0.098863853766602
PLGQRPLL	8	Unmodified	_PLGQRPLL_					0	0	0			REV__ENST00000219611.6_1_16:604006-604486:+|nuORF	REV__ENST00000219611.6_1_16:604006-604486:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.281982421875	2	447.281995	892.549437	0.34327	0.00015354	-0.35882	-0.00016049	-0.015545	-6.9528E-06	447.2817743440436	38.526	2.2754	38.624	37.953	40.228	0.097527					150	81	3	0	0	0	0.30517	1	8195	8195		30.225	5.5509	1	706590	+		32904	19420	19150	19151	40249	40249					0.098863853766602
PLGRDAFSKQ	10	Unmodified	_PLGRDAFSKQ_					0	0	0			REV__nc|ENSG00000185585|Q68BL7-3|OLFML2A	REV__nc|ENSG00000185585|Q68BL7-3|OLFML2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8038940429688	2	559.80128	1117.58801	0.13457	7.5333E-05	2.5823	0.0014456	2.7169	0.0015209	559.8025988567694	18.513	0.40177	18.513	18.363	18.765	0					22	13	2	0	0	0	0.41242	1	1986	1986		1.1933	0.23107	1	41272	+		32905	18391	19151	19152	40250	40250					0.033916462205070275
PLGRTSPSP	9	Unmodified	_PLGRTSPSP_					0	0	0			REV__ENST00000461555.1_1_17:16472062-16472293:-|nuORF	REV__ENST00000461555.1_1_17:16472062-16472293:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.27471923828125	2	456.250892	910.48723	-0.09406	-4.2915E-05	-0.41655	-0.00019005	-0.51061	-0.00023297	456.25045231188386	27.574	1.0843	27.574	26.897	27.981	0					54	37	3	0	0	0	0.25323	1	4546	4546		10.074	0.6908	1	125240	+		32906	20642	19152	19153	40251	40251					0.028406142376638854
PLGSMYRPVNW	11	Unmodified	_PLGSMYRPVNW_					0	0	0		ENSG00000177558|ENST00000324675|FAM187B	ENSG00000177558|ENST00000324675|FAM187B	ENSG00000177558|ENST00000324675|FAM187B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.9084777832031	3	440.557019	1318.64923	0.17215	7.5841E-05	-1.2689	-0.000559	-1.0967	-0.00048316	440.5568903147303	32.662	0.26694	32.716	32.498	32.765	0.054375					14	9	3	0	0	0	0.33202	1	6254	6254		5.0475	1.1712	1	98302			32907	6998	19153	19154	40252	40252					0.002648349282935669
PLGSSSWSL	9	Unmodified	_PLGSSSWSL_					0	0	0		ENST00000308027.6_1_17:6939675-6939873:+|nuORF	ENST00000308027.6_1_17:6939675-6939873:+|nuORF	ENST00000308027.6_1_17:6939675-6939873:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2228088378906	2	467.23745	932.460347	0.26422	0.00012345	0.48802	0.00022802	0.75224	0.00035147	467.23740461908125	54.003	1.166	54.003	53.542	54.708	0					103	42	4	0	0	0	0.23775	1	12919	12919		18.135	2.3668	1	2278800			32908	9283	19154	19155	40253	40253					-0.008584943735286288
PLGVQQKYL	9	Unmodified	_PLGVQQKYL_					0	0	0		ENSG00000101751|ENST00000579534|POLI;POLI|p.G322Dfs*33|1|0.28|ENSG00000101751|chr18:54283004-54283004|G/-|frameshift_variant	ENSG00000101751|ENST00000579534|POLI	ENSG00000101751|ENST00000579534|POLI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7525634765625	2	523.305667	1044.59678	0.6046	0.00031639	-0.68344	-0.00035765	-0.078833	-4.1254E-05	523.3052996890817	56.698	0.43606	56.777	56.575	57.011	0.078671					25	16	2	0	0	0	0.24311	1	13666	13666		16.942	2.104	1	214320			32909	1719	19155	19156	40254	40254					0.0762661985700106
PLGWPYMTLKL	11	Unmodified	_PLGWPYMTLKL_					0	0	0			REV__nc|ENSG00000184224|Q8NBR9|NDUFV1-DT	REV__nc|ENSG00000184224|Q8NBR9|NDUFV1-DT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.7474365234375	3	440.245782	1317.71552	-0.18086	-7.9623E-05	-0.6487	-0.00028559	-0.82956	-0.00036521	440.2453805270657	18.353	0.54119	18.295	18.087	18.628	-0.058174					38	18	3	0	0	0	0.33296	1	1859	1859		2.6312	0.19645	1	104910	+		32910	23135	19156	19157	40255	40255					0.06936650770330743
PLHANTSL	8	Unmodified	_PLHANTSL_					0	0	0		ENSG00000240764|ENST00000252087|PCDHGC5;nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5	ENSG00000240764|ENST00000252087|PCDHGC5	ENSG00000240764|ENST00000252087|PCDHGC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.23974609375	2	426.732335	851.450116	-0.41776	-0.00017827	-0.81214	-0.00034657	-1.2299	-0.00052484	426.7321606261038	28.117	0.22339	28.117	27.992	28.215	0.0004673					9	7	2	0	0	0	0.34092	1	4866	4866		13.508	0	1	34226			32911	8524	19157	19158	40256	40256					0.018449426919119105
PLHATRPIVT	10	Unmodified	_PLHATRPIVT_					0	0	0			REV__ENST00000556739.5_1_14:92918938-92928484:+|nuORF	REV__ENST00000556739.5_1_14:92918938-92928484:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.29833984375	2	552.82984	1103.64513	0.63143	0.00034907	2.5937	0.0014339	3.2251	0.0017829	552.8316419515339	50.462	0.51987	50.462	50.166	50.686	0					26	18	2	0	0	0	0.30079	1	11653	11653		10.074	8.592	1	113820	+		32912	22263	19158	19159	40257	40257					0.09745113496887825
PLHATRPIVT	10	Unmodified	_PLHATRPIVT_					0	0	0			REV__ENST00000556739.5_1_14:92918938-92928484:+|nuORF	REV__ENST00000556739.5_1_14:92918938-92928484:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2984008789062	2	552.82984	1103.64513	0.94061	0.00052	2.1186	0.0011712	3.0592	0.0016912	552.8308866297355	50.312	0.43038	50.333	50.202	50.632	0.020691					19	15	2	0	0	0	0.30079	1	11632	11632		3.2813	1.6287	1	135110	+		32913	22263	19158	19159	40258	40258					0.09745113496887825
PLHAVPLQK	9	Unmodified	_PLHAVPLQK_					0	0	0			REV__SUGP1|p.R157L|1|0.05|ENSG00000105705|chr19:19305917-19305917|C/A|missense_variant	REV__SUGP1|p.R157L|1|0.05|ENSG00000105705|chr19:19305917-19305917|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.290771484375	2	501.808377	1001.6022	0.021094	1.0585E-05	1.1805	0.00059237	1.2016	0.00060295	501.80897612716444	13.614	0.20325	13.614	13.537	13.74	0					10	6	2	0	0	0	0.21905	1	496	496		23.148	5.0134	1	80031	+		32914	23313	19159	19160	40259	40259					0.10146343439464545
PLHCACFLSS	10	Unmodified	_PLHCACFLSS_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;nc|ENSG00000099622|Q14011-3|CIRBP;ENST00000591097.5_1_19:1271671-1272439:+|nuORF	nc|ENSG00000099622|Q14011-2|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2481079101562	2	539.246437	1076.47832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.37	1	101.37	100.87	101.87	0								0	0	0	0.37581	1	27026	27026		3.9444	0	1				32915	1491	19160	19161	40260	40260					-0.0568581871468723
PLHFKGCPF	9	Unmodified	_PLHFKGCPF_					0	0	0		ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	ENSG00000171497|ENST00000307720|PPID	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7572021484375	2	523.26803	1044.52151	0.41587	0.00021761	2.5317	0.0013247	2.9476	0.0015424	523.2697861778407	69.915	0.84119	69.893	69.462	70.304	-0.022087					62	30	3	0	0	0	0.23783	1	17769	17769		18.135	4.6271	1	181950			32916	6550	19161	19162	40261	40261					0.0010273912491811643
PLHFLRSN	8	Unmodified	_PLHFLRSN_					0	0	0			REV__nc|ENSG00000145901|Q15025-3|TNIP1	REV__nc|ENSG00000145901|Q15025-3|TNIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.3088073730469	2	492.274701	982.534849	0.021297	1.0484E-05	-1.837	-0.00090432	-1.8157	-0.00089383	492.27437141814374	25.505	0.47314	25.474	25.265	25.738	-0.031408					29	16	2	0	0	0	0.3439	1	4125	4125		0.79363	0.10326	1	118430	+		32917	16317	19162	19163	40262	40262					0.042883132285282954
PLHFLRSN	8	Unmodified	_PLHFLRSN_					0	0	0			REV__nc|ENSG00000145901|Q15025-3|TNIP1	REV__nc|ENSG00000145901|Q15025-3|TNIP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	492.274701	982.534849	0.25288	0.00012448	-0.84606	-0.00041649	-0.59318	-0.00029201	492.2739804336996	25.418	0.32389	25.418	25.239	25.562	0	-0.013942	0.00039753	NaN	0.79363	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112760	+		32918	16317	19162	19163							0.042883132285282954
PLHFLRSN	8	Unmodified	_PLHFLRSN_					0	0	0			REV__nc|ENSG00000145901|Q15025-3|TNIP1	REV__nc|ENSG00000145901|Q15025-3|TNIP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	492.274701	982.534849	0.082468	4.0597E-05	-1.5694	-0.00077259	-1.487	-0.000732	492.27420190866155	25.46	0.31091	25.405	25.281	25.592	-0.055929	-0.027708	-0.00031467	NaN	0.79363	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100140	+		32919	16317	19162	19163							0.042883132285282954
PLHKALDMV	9	Unmodified	_PLHKALDMV_					0	0	0			REV__ENSG00000165392|ENST00000298139|WRN	REV__ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.9854736328125	2	512.28642	1022.55829	0.34005	0.0001742	0.30149	0.00015445	0.64154	0.00032865	512.7893330700421	93.946	0.20549	93.946	93.853	94.059	-0.00051117					18	14	2	0	0	0	0.25622	1	25047	25047		7.2892	0	1	112490	+		32920	17233	19163	19164	40263	40263					0.047909909508234705
PLHLDHGL	8	Unmodified	_PLHLDHGL_					0	0	0		ENST00000502187.5_1_14:98426074-98426648:-|nuORF	ENST00000502187.5_1_14:98426074-98426648:-|nuORF	ENST00000502187.5_1_14:98426074-98426648:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2487487792969	2	451.248152	900.481751	0.23034	0.00010394	1.3955	0.00062974	1.6259	0.00073367	451.2487011173458	58.531	0.81483	58.623	58.168	58.983	0.091301					46	28	2	0	0	0	0.421	1	14212	14212		15.768	0	1	352380			32921	11270	19164	19165	40264	40264					0.02752935445869298
PLHPLWSPV	9	Unmodified	_PLHPLWSPV_					0	0	0			REV__ENST00000496594.5_1_9:130883426-130884979:-|nuORF	REV__ENST00000496594.5_1_9:130883426-130884979:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2805786132812	2	523.295102	1044.57565	0.77291	0.00040446	3.4368	0.0017985	4.2097	0.0022029	523.29706602863	33.552	0.57944	33.618	33.295	33.875	0.06636					35	20	3	0	0	0	0.27532	1	6579	6579		12.532	0.89125	1	286870	+		32922	21673	19165	19166	40265	40265					0.05514654548119324
PLHPRVRR	8	Unmodified	_PLHPRVRR_					0	0	0		ENST00000286639.6_1_14:75988823-75988967:+|nuORF;ENST00000555795.1_1_14:75988823-76013011:+|nuORF	ENST00000286639.6_1_14:75988823-75988967:+|nuORF	ENST00000286639.6_1_14:75988823-75988967:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2958984375	2	515.822684	1029.63082	-0.20141	-0.00010389	-1.3472	-0.00069491	-1.5486	-0.00079881	515.8218747463742	12.979	0.22728	12.912	12.819	13.047	-0.067496					8	5	2	0	0	0	0.344	1	274	274		2.5775	0.73324	1	35677			32923	9142	19166	19167	40266	40266					0.1171850585926677
PLHQPGRL	8	Unmodified	_PLHQPGRL_					0	0	0		ENST00000294599.8_1_1:3426447-3426525:-|nuORF	ENST00000294599.8_1_1:3426447-3426525:-|nuORF	ENST00000294599.8_1_1:3426447-3426525:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.7558898925781	2	459.269419	916.524284	0.090356	4.1498E-05	-2.1855	-0.0010037	-2.0952	-0.00096225	459.2688881042506	32.853	0.58157	32.908	32.73	33.312	0.055309					26	20	2	0	0	0	0.34218	1	6364	6364		9.3474	0	1	68138			32924	9168	19167	19168	40267	40267					0.06268330574084757
PLHRALTEL	9	Unmodified	_PLHRALTEL_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;ENST00000573536.1_1_17:3912804-3919778:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2669067382812	2	525.308741	1048.60293	0.16772	8.8106E-05	-2.1843	-0.0011474	-2.0166	-0.0010593	525.3080176034908	12.884	0.16914	12.884	12.783	12.952	0					8	5	2	0	0	0	0.25988	1	250	250		3.9444	0	1	33414			32925	1026	19168	19169	40268	40268					0.08057138088497595
PLHTELLL	8	Unmodified	_PLHTELLL_					0	0	0			REV__ENSG00000101361|ENST00000329276|NOP56	REV__ENSG00000101361|ENST00000329276|NOP56	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.2890930175781	2	468.28166	934.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.305	1	73.276	72.776	73.776	-0.029305								0	0	0	0.34752	1	18715	18715		15.768	0	1		+		32926	14268	19169	19170	40269	40269					0.07887545936955576
PLHVIPPLK	9	Unmodified	_PLHVIPPLK_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2846374511719	2	507.328945	1012.64334	-0.21459	-0.00010887	-2.6853	-0.0013624	-2.8999	-0.0014712	507.32745092586526	34.387	0.28028	34.387	34.247	34.528	0					16	9	2	0	0	0	0.24739	1	6787	6787		13.508	3.434	1	89661	+		32927	17857	19170	19171	40270	40270					0.13752104478953697
PLHWWLWE	8	Unmodified	_PLHWWLWE_					0	0	0			REV__ENST00000278426.7_2_11:57263521-57268513:-|nuORF	REV__ENST00000278426.7_2_11:57263521-57268513:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3064575195312	2	583.792727	1165.5709	0.076397	4.46E-05	1.0162	0.00059323	1.0926	0.00063783	583.7933324444865	46.283	0.56277	46.283	46.029	46.592	0					31	20	2	0	0	0	0.34297	1	10347	10347		6.3541	1.1234	1	436080	+		32928	19697	19171	19172	40271	40271					-0.005262295946295126
PLHYLGPGLI	10	Unmodified	_PLHYLGPGLI_					0	0	0			REV__LTR30_dup35|chr4:69116520-69117223:+|4.948180749754446|0.1119489561624759|5.47|538.0|8|1|sense	REV__LTR30_dup35|chr4:69116520-69117223:+|4.948180749754446|0.1119489561624759|5.47|538.0|8|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3302612304688	2	540.316035	1078.61752	0.74283	0.00040137	0.6617	0.00035753	1.4045	0.00075889	540.3165568732095	75.217	1.2695	75.186	74.868	76.137	-0.031487					136	46	4	0	0	0	0.31876	1	19562	19562		18.135	2.2878	1	5718800	+		32929	22844	19172	19173	40272	40272					0.08135210236673629
PLIGLPTLIS	10	Unmodified	_PLIGLPTLIS_					0	0	0		Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|49|2|sense	Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|49|2|sense	Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|49|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.3157348632812	2	512.326068	1022.63758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.458	1	85.458	84.958	85.958	0								0	0	0	0.32028	1	22447	22447		25.399	0	1				32930	12361	19173	19174	40273	40273					0.12716961176613495
PLIIVNSI	8	Unmodified	_PLIIVNSI_					0	0	0		ENSG00000134049|ENST00000256433|IER3IP1	ENSG00000134049|ENST00000256433|IER3IP1	ENSG00000134049|ENST00000256433|IER3IP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.25091552734375	2	434.778754	867.542954	-0.17474	-7.5972E-05	0.36376	0.00015816	0.18902	8.2184E-05	434.7789370343157	69.162	0.97099	69.162	68.872	69.843	0					58	34	3	0	0	0	0.19042	1	17481	17481		24.674	0	1	365330			32931	3751	19174	19175	40274	40274					0.10388447425270897
PLILYLGMV	9	Unmodified	_PLILYLGMV_					0	0	0		ENSG00000123643|ENST00000243389|SLC36A1;nc|ENSG00000123643|Q7Z2H8-3|SLC36A1	ENSG00000123643|ENST00000243389|SLC36A1	ENSG00000123643|ENST00000243389|SLC36A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.80413818359375	2	509.803914	1017.59328	0.2354	0.00012001	-0.11861	-6.0466E-05	0.1168	5.9543E-05	509.80377964624006	74.358	2.6692	74.41	72.68	75.349	0.052361					188	95	3	0	0	0	0.29662	1	19012	19012		9.3474	0	1	2312800			32932	3120	19175	19176	40275	40275					0.08518233758775295
PLIPGLGQQG	10	Unmodified	_PLIPGLGQQG_					0	0	0		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.8096618652344	2	490.282192	978.549831	0.43557	0.00021355	-0.70469	-0.00034549	-0.26912	-0.00013194	490.2817258919819	57.42	0.47479	57.42	57.19	57.665	0					34	16	3	0	0	0	0.31482	1	13797	13797		11.64	0	1	536000			32933	3990	19176	19177	40276	40276					0.05969760305856653
PLIRLGLL	8	Unmodified	_PLIRLGLL_					0	0	0			REV__ENST00000409490.5_1_2:98948164-98950423:-|nuORF	REV__ENST00000409490.5_1_2:98948164-98950423:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.8104248046875	2	447.810388	893.606223	0.58885	0.00026369	-0.4256	-0.00019059	0.16325	7.3106E-05	447.81008237065055	74.573	0.70045	74.573	74.343	75.043	0					51	24	3	0	0	0	0.33916	2	19097	19097;19146		26.341	5.4701	1	1042800	+		32934	20760	19177	19178	40277;40278	40277					0.1551643293316829
PLIRLGLL	8	Unmodified	_PLIRLGLL_					0	0	0			REV__ENST00000409490.5_1_2:98948164-98950423:-|nuORF	REV__ENST00000409490.5_1_2:98948164-98950423:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.810302734375	2	447.810388	893.606223	0.16078	7.1999E-05	-0.14948	-6.6937E-05	0.011305	5.0624E-06	447.8102219957593	74.557	1.0481	74.609	74.353	75.401	0.052361					67	37	3	0	0	0	0.2705	1	19088	19088		34.187	6.0141	1	878420	+		32935	20760	19177	19178	40279	40279					0.1551643293316829
PLITLTAI	8	Unmodified	_PLITLTAI_					0	0	0			REV__ENST00000468349.1_1_21:34962215-34963578:-|nuORF	REV__ENST00000468349.1_1_21:34962215-34963578:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.2616882324219	2	421.273304	840.532055	0.34758	0.00014643	-0.52617	-0.00022166	-0.17859	-7.5235E-05	421.2729932027723	77.058	0.21993	77.027	76.905	77.125	-0.031334					11	7	2	0	0	0	0.421	1	19887	19887		15.768	0	1	61861	+		32936	21322	19178	19179	40280	40280					0.10541045050979392
PLIVLLVRPLW	11	Unmodified	_PLIVLLVRPLW_					0	0	0			REV__ENST00000564480.1_2_16:19729090-19729441:-|nuORF	REV__ENST00000564480.1_2_16:19729090-19729441:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.7947082519531	3	440.291831	1317.85366	0.23363	0.00010286	0.49492	0.00021791	0.72855	0.00032077	440.29188439659174	53.402	0.53249	53.402	53.062	53.595	0					37	19	3	0	0	0	0.33326	1	12653	12653		1.4551	0	1	277650	+		32937	22340	19179	19180	40281	40281					0.20745142081113954
PLIVLLVRPLW	11	Unmodified	_PLIVLLVRPLW_					0	0	0			REV__ENST00000564480.1_2_16:19729090-19729441:-|nuORF	REV__ENST00000564480.1_2_16:19729090-19729441:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.7946472167969	3	440.291831	1317.85366	0.23119	0.00010179	0.43483	0.00019145	0.66602	0.00029324	440.2917065332945	53.343	0.5854	53.399	53.079	53.664	0.056255					37	21	3	0	0	0	0.33326	1	12640	12640		1.4551	0	1	264080	+		32938	22340	19179	19180	40282	40282					0.20745142081113954
PLKAFLFSPFL	11	Unmodified	_PLKAFLFSPFL_					0	0	0		ENSG00000163285|ENST00000295452|GABRG1	ENSG00000163285|ENST00000295452|GABRG1	ENSG00000163285|ENST00000295452|GABRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.24005126953125	3	427.253154	1278.73763	-0.3099	-0.0001324	2.0653	0.00088239	1.7554	0.00074999	427.25392653785633	27.484	0.34033	27.462	27.188	27.528	-0.021412					17	11	2	0	0	0	0.38765	1	4679	4679		12.856	4.1042	1	97462			32939	5660	19180	19181	40283	40283					0.10941198510431605
PLKAFLFSPFL	11	Unmodified	_PLKAFLFSPFL_					0	0	0		ENSG00000163285|ENST00000295452|GABRG1	ENSG00000163285|ENST00000295452|GABRG1	ENSG00000163285|ENST00000295452|GABRG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	427.253154	1278.73763	-0.2813	-0.00012019	1.7214	0.00073548	1.4401	0.0006153	427.2537959888837	27.464	0.28931	27.453	27.266	27.555	-0.01156	-0.0047278	-0.00033642	NaN	12.856	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100090			32940	5660	19180	19181							0.10941198510431605
PLKALVKQ	8	Unmodified	_PLKALVKQ_					0	0	0			REV__nc|ENSG00000072952|Q9Y6F6-6|IRAG1	REV__nc|ENSG00000072952|Q9Y6F6-6|IRAG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.25299072265625	2	448.80002	895.585488	0.26845	0.00012048	-0.095423	-4.2826E-05	0.17303	7.7654E-05	448.79998996064387	28.883	0.60381	28.883	28.64	29.244	0					27	21	2	0	0	0	0.34319	1	5061	5061		2.5775	0	1	71814	+		32941	13769	19181	19182	40284	40284					0.1335184255351578
PLKALVKQ	8	Unmodified	_PLKALVKQ_					0	0	0			REV__nc|ENSG00000072952|Q9Y6F6-6|IRAG1	REV__nc|ENSG00000072952|Q9Y6F6-6|IRAG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	448.80002	895.585488	0.13515	6.0655E-05	0.044437	1.9943E-05	0.17959	8.0598E-05	448.79998614898807	28.84	0.48592	28.836	28.658	29.144	-0.0042572	-0.045671	4.8892E-05	NaN	2.5775	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98647	+		32942	13769	19181	19182							0.1335184255351578
PLKALVKQ	8	Unmodified	_PLKALVKQ_					0	0	0			REV__nc|ENSG00000072952|Q9Y6F6-6|IRAG1	REV__nc|ENSG00000072952|Q9Y6F6-6|IRAG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	448.80002	895.585488	0.073112	3.2813E-05	0.034165	1.5333E-05	0.10728	4.8146E-05	448.7999143902167	28.913	0.51787	28.927	28.674	29.192	0.013474	0.044952	3.9672E-05	NaN	2.5775	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109910	+		32943	13769	19181	19182							0.1335184255351578
PLKAPRPAGF	10	Unmodified	_PLKAPRPAGF_					0	0	0		ENST00000414656.1_1_9:139700878-139703284:-|nuORF	ENST00000414656.1_1_9:139700878-139703284:-|nuORF	ENST00000414656.1_1_9:139700878-139703284:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.802001953125	2	527.313826	1052.6131	0.65455	0.00034515	-1.7923	-0.00094511	-1.1378	-0.00059995	527.3126749757048	64.631	0.25854	64.621	64.523	64.781	-0.0095291					14	8	2	0	0	0	0.31745	1	16106	16106		1.8442	0	1	196580			32944	10301	19182	19183	40285	40285					0.08889745813735317
PLKAPVSLI	9	Unmodified	_PLKAPVSLI_					0	0	0			REV__ENSG00000107625|ENST00000373585|DDX50	REV__ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.3076171875	2	469.307678	936.600803	-0.092922	-4.3609E-05	0.060395	2.8344E-05	-0.032527	-1.5265E-05	469.30759215117837	61.677	1.3964	61.677	61.155	62.552	0					130	52	4	0	0	0	0.041175	1	15152	15152		56.177	0	1	4327600	+		32945	14559	19183	19184	40286	40286					0.12996709350716174
PLKARKVRFSE	11	Unmodified	_PLKARKVRFSE_					0	0	0		ENSG00000087074|ENST00000200453|PPP1R15A;nc|ENSG00000087074|O75807-2|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	444.2386474609375	3	444.269978	1329.7881	0.43406	0.00019284	-0.23839	-0.00010591	0.19567	8.693E-05	444.26993807728445	37.833	0.78944	37.833	37.587	38.377	0					77	27	4	0	0	0	0.33236	1	7884	7884		2.4348	0	1	1593600			32946	1292	19184	19185	40287	40287					0.13640120888135243
PLKCLQTCI	9	Unmodified	_PLKCLQTCI_					0	0	0		ENST00000510175.5_1_4:155055-155787:+|nuORF	ENST00000510175.5_1_4:155055-155787:+|nuORF	ENST00000510175.5_1_4:155055-155787:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7534484863281	2	509.774831	1017.53511	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.161	1	57.239	56.739	57.739	0.078674								0	0	0	0.22065	1	13773	13773		15.847	0.078963	1				32947	11368	19185	19186	40288	40288					0.02704228841821532
PLKEKDVL	8	Unmodified	_PLKEKDVL_					0	0	0			REV__ENSG00000079112|ENST00000027335|CDH17	REV__ENSG00000079112|ENST00000027335|CDH17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2870788574219	2	471.286943	940.559333	0.050444	2.3774E-05	-0.62345	-0.00029383	-0.57301	-0.00027005	471.2867389662998	59.486	0.55608	59.581	59.242	59.798	0.095089					31	19	2	0	0	0	0.41758	1	14457	14457		16.942	0	1	197830	+		32948	13865	19186	19187	40289	40289					0.0866752859137705
PLKGRAKTP	9	Unmodified	_PLKGRAKTP_					0	0	0		ENSG00000120802|ENST00000556029|TMPO;nc|ENSG00000120802|P42167-2|TMPO;nc|ENSG00000120802|P42167-3|TMPO	ENSG00000120802|ENST00000556029|TMPO	ENSG00000120802|ENST00000556029|TMPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.8161926269531	2	484.306001	966.597449	0.29922	0.00014492	-1.483	-0.00071824	-1.1838	-0.00057332	484.3056447166597	26.253	0.42967	26.231	26.043	26.472	-0.022236					31	14	3	0	0	0	0.30623	1	4356	4356		7.9102	2.1497	1	73733			32949	2966	19187	19188	40290	40290					0.11281459296708363
PLKGRGFF	8	Unmodified	_PLKGRGFF_					0	0	0		ENST00000553612.5_1_14:81686964-81687150:-|nuORF	ENST00000553612.5_1_14:81686964-81687150:-|nuORF	ENST00000553612.5_1_14:81686964-81687150:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.27947998046875	2	461.268887	920.523222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.78	1	40.78	40.28	41.28	0								0	0	0	0.3683	1	8728	8728		6.3541	0.59368	1				32950	11821	19188	19189	40291	40291					0.05978116205187689
PLKHISLV	8	Unmodified	_PLKHISLV_					0	0	0			REV__ENSG00000181790|ENST00000517894|ADGRB1	REV__ENSG00000181790|ENST00000517894|ADGRB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.7922668457031	2	453.792195	905.569838	0.20333	9.227E-05	-0.13062	-5.9274E-05	0.072712	3.2996E-05	453.7921176016608	62.477	1.2908	62.469	62.118	63.408	-0.0085526					94	47	3	0	0	0	0.42077	1	15468	15468		15.847	0	1	634270	+		32951	18166	19189	19190	40292	40292					0.11327556036462738
PLKIISLL	8	Unmodified	_PLKIISLL_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.758056640625	2	448.812596	895.61064	0.24717	0.00011093	-0.37084	-0.00016644	-0.12367	-5.5506E-05	448.81239948135044	68.761	0.53911	68.833	68.59	69.129	0.071938					28	19	2	0	0	0	0.34167	1	17316	17316		11.64	0	1	135250	+		32952	15095	19190	19191	40293	40293					0.15865897356093228
PLKKLSYSST	10	Unmodified	_PLKKLSYSST_					0	0	0			REV__ENSG00000138039|ENST00000294954|LHCGR	REV__ENSG00000138039|ENST00000294954|LHCGR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.322265625	2	562.321514	1122.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.97	1	115.97	115.47	116.47	0								0	0	0	0.38126	1	30042	30042		1.6526	1.0511	1		+		32953	15897	19191	19192	40294	40294					0.07206567820298915
PLKKLSYSST	10	Unmodified	_PLKKLSYSST_					0	0	0			REV__ENSG00000138039|ENST00000294954|LHCGR	REV__ENSG00000138039|ENST00000294954|LHCGR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3231811523438	2	562.321514	1122.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.67	1	112.66	112.16	113.16	-0.015625								0	0	0	0.38126	1	29306	29306		1.6526	0.96225	1		+		32954	15897	19191	19192	40295	40295					0.07206567820298915
PLKLSVPA	8	Unmodified	_PLKLSVPA_					0	0	0		ENSG00000204542|ENST00000259870|C6orf15	ENSG00000204542|ENST00000259870|C6orf15	ENSG00000204542|ENST00000259870|C6orf15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2087707519531	2	412.765646	823.516739	-0.24914	-0.00010284	1.676	0.00069181	1.4269	0.00058898	412.76701247459044	35.38	1.3226	35.455	34.814	36.136	0.075302					80	47	2	0	0	0	0.3439	1	7166	7166		0.79363	0	1	160260			32955	8238	19192	19193	40296	40296					0.0979217825380374
PLKLTSPAPS	10	Unmodified	_PLKLTSPAPS_					0	0	0		ENST00000530220.1_1_19:10461512-10463916:-|nuORF	ENST00000530220.1_1_19:10461512-10463916:-|nuORF	ENST00000530220.1_1_19:10461512-10463916:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.80889892578125	2	505.797675	1009.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.298	1	29.31	28.81	29.81	0.012266								0	0	0	0.35421	1	5225	5225		13.042	1.4022	1				32956	11615	19193	19194	40297	40297					0.0763891362009872
PLKNRQANTKI	11	Unmodified	_PLKNRQANTKI_					0	0	0			REV__ENST00000471727.3_1_2:68758519-68795411:+|nuORF	REV__ENST00000471727.3_1_2:68758519-68795411:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8817138671875	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.73	1	101.73	101.23	102.23	0								0	0	0	0.38114	1	27116	27116		1.3295	0	1		+		32957	17527	19194	19195	40298	40298					0.12211243991396259
PLKPFRRKDKF	11	Unmodified	_PLKPFRRKDKF_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2639465332031	3	477.957623	1430.85104	0.30455	0.00014556	1.7867	0.00085399	2.0913	0.00099955	477.9589728011693	95.919	0.12013	95.915	95.84	95.96	-0.0038147					14	9	2	0	0	0	0.33326	1	25636	25636		1.4551	0.34536	1	96222	+		32958	17664	19195	19196	40299	40299					0.15284686676136516
PLKPHKEL	8	Unmodified	_PLKPHKEL_					0	0	0			REV__ENSG00000165730|ENST00000298596|STOX1	REV__ENSG00000165730|ENST00000298596|STOX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2608947753906	2	481.295102	960.575651	0.25939	0.00012485	0.024002	1.1552E-05	0.2834	0.0001364	481.2949658207879	49.566	1.0891	49.566	49.292	50.381	0					89	39	3	0	0	0	0.34185	1	11347	11347		5.7604	3.9162	1	882700	+		32959	17261	19196	19197	40300	40300					0.0937865454814073
PLKRAITTL	9	Unmodified	_PLKRAITTL_					0	0	0		ENST00000473743.5_1_2:99797706-99803390:+|nuORF;ENSG00000241962|ENST00000424491|unknown	ENST00000473743.5_1_2:99797706-99803390:+|nuORF	ENST00000473743.5_1_2:99797706-99803390:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2579650878906	2	506.829309	1011.64407	0.10026	5.0817E-05	0.076098	3.8569E-05	0.17636	8.9386E-05	506.8292586695814	31.47	0.22737	31.512	31.347	31.574	0.042364					12	7	2	0	0	0	0.25066	1	5846	5846		11.64	3.7301	1	128860			32960	8537	19197	19198	40301	40301					0.1387089912796
PLKRAITTL	9	Unmodified	_PLKRAITTL_					0	0	0		ENST00000473743.5_1_2:99797706-99803390:+|nuORF;ENSG00000241962|ENST00000424491|unknown	ENST00000473743.5_1_2:99797706-99803390:+|nuORF	ENST00000473743.5_1_2:99797706-99803390:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	506.829309	1011.64407	0.10899	5.5239E-05	-0.19958	-0.00010115	-0.090594	-4.5916E-05	506.8288450118899	31.514	0.19218	31.514	31.361	31.553	0	0.0075758	-0.00013064	NaN	11.64	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85801			32961	8537	19197	19198							0.1387089912796
PLKRAITTL	9	Unmodified	_PLKRAITTL_					0	0	0		ENST00000473743.5_1_2:99797706-99803390:+|nuORF;ENSG00000241962|ENST00000424491|unknown	ENST00000473743.5_1_2:99797706-99803390:+|nuORF	ENST00000473743.5_1_2:99797706-99803390:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.829309	1011.64407	0.27098	0.00013734	-0.28303	-0.00014345	-0.012046	-6.1052E-06	506.8290294468856	31.451	0.14252	31.492	31.365	31.507	0.040991	-0.013539	-0.00021523	NaN	11.64	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110990			32962	8537	19197	19198							0.1387089912796
PLKSVIKVT	9	Unmodified	_PLKSVIKVT_					0	0	0			REV__ENST00000425916.4_1_10:77167483-77167783:+|nuORF	REV__ENST00000425916.4_1_10:77167483-77167783:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.25335693359375	2	492.826235	983.637917	0.36879	0.00018175	-0.78297	-0.00038587	-0.41418	-0.00020412	492.8263877719925	71.3	0.13362	71.361	71.273	71.407	0.060783					5	4	2	0	0	0	0.25417	1	18095	18095		4.756	0	1	115710	+		32963	20896	19198	19199	40302	40302					0.14544380896461462
PLKTIVPG	8	Unmodified	_PLKTIVPG_					0	0	0			REV__ENST00000595288.5_1_19:7692923-7693151:-|nuORF	REV__ENST00000595288.5_1_19:7692923-7693151:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.20867919921875	2	412.765646	823.516739	-0.46968	-0.00019387	2.057	0.00084907	1.5874	0.00065521	412.7671168718852	35.278	1.401	35.355	34.675	36.076	0.077377					84	50	2	0	0	0	0.3439	1	7146	7146		2.8892	0	1	207510	+		32964	22593	19199	19200	40303	40303					0.09792178253815109
PLKTLQQPA	9	Unmodified	_PLKTLQQPA_					0	0	0		ENSG00000166148|ENST00000299178|AVPR1A	ENSG00000166148|ENST00000299178|AVPR1A	ENSG00000166148|ENST00000299178|AVPR1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.79608154296875	2	498.297842	994.581131	0.35907	0.00017892	-0.31893	-0.00015892	0.040143	2.0003E-05	498.29774216919526	43.444	1.1421	43.444	42.871	44.013	0					92	41	3	0	0	0	0.25066	1	9521	9521		3.9444	2.6149	1	575020			32965	6034	19200	19201	40304	40304					0.08362333339948691
PLKTLQQPA	9	Unmodified	_PLKTLQQPA_					0	0	0		ENSG00000166148|ENST00000299178|AVPR1A	ENSG00000166148|ENST00000299178|AVPR1A	ENSG00000166148|ENST00000299178|AVPR1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7962951660156	2	498.297842	994.581131	0.29678	0.00014788	-0.22706	-0.00011314	0.06972	3.4741E-05	498.29778759094	43.193	0.94756	43.277	42.71	43.657	0.083996					62	34	2	0	0	0	0.2322	1	9460	9460		10.074	1.3285	1	528150			32966	6034	19200	19201	40305	40305					0.08362333339948691
PLKTRDKEI	9	Unmodified	_PLKTRDKEI_					0	0	0			REV__ENST00000400183.6_1_21:17163903-17163942:+|nuORF	REV__ENST00000400183.6_1_21:17163903-17163942:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3273315429688	2	550.327131	1098.63971	0.38733	0.00021316	0.13819	7.6048E-05	0.52552	0.00028921	550.3272039320888	34.121	0.58637	34.188	33.875	34.461	0.06636					37	20	3	0	0	0	0.23007	1	6702	6702		19.257	1.8143	1	153830	+		32967	20700	19201	19202	40306	40306					0.09433389914420331
PLKTRDKEI	9	Unmodified	_PLKTRDKEI_					0	0	0			REV__ENST00000400183.6_1_21:17163903-17163942:+|nuORF	REV__ENST00000400183.6_1_21:17163903-17163942:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	550.327131	1098.63971	0.2652	0.00014595	0.33428	0.00018396	0.59948	0.00032991	550.327148522034	34.235	0.50425	34.235	34.023	34.528	0	0.04546	0.00020832	NaN	19.257	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151350	+		32968	20700	19201	19202							0.09433389914420331
PLKTRDKEI	9	Unmodified	_PLKTRDKEI_					0	0	0			REV__ENST00000400183.6_1_21:17163903-17163942:+|nuORF	REV__ENST00000400183.6_1_21:17163903-17163942:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	550.327131	1098.63971	0.38733	0.00021316	0.13819	7.6048E-05	0.52552	0.00028921	550.3272039320888	34.121	0.58637	34.188	33.875	34.461	0.06636	-0.002092	-7.5139E-06	NaN	19.257	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153830	+		32969	20700	19201	19202							0.09433389914420331
PLKTRDKEI	9	Unmodified	_PLKTRDKEI_					0	0	0			REV__ENST00000400183.6_1_21:17163903-17163942:+|nuORF	REV__ENST00000400183.6_1_21:17163903-17163942:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	550.327131	1098.63971	0.28324	0.00015587	0.10399	5.7228E-05	0.38723	0.0002131	550.3271325912332	34.08	0.43922	34.146	33.967	34.406	0.066704	-0.043368	-4.5155E-05	NaN	19.257	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168950	+		32970	20700	19201	19202							0.09433389914420331
PLKVKIVTV	9	Unmodified	_PLKVKIVTV_					0	0	0		ENST00000521220.1_1_8:27593735-27605871:-|nuORF	ENST00000521220.1_1_8:27593735-27605871:-|nuORF	ENST00000521220.1_1_8:27593735-27605871:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.6563720703125	2	498.844428	995.674303	0.31537	0.00015732	-0.20781	-0.00010366	0.10757	5.3659E-05	498.8442729259225	43.938	0.57537	43.938	43.63	44.206	0					35	20	2	0	0	0	0.25879	1	9762	9762		0.52476	0	1	452930			32971	11487	19202	19203	40307	40307					0.17629257793180386
PLKVKIVTV	9	Unmodified	_PLKVKIVTV_					0	0	0		ENST00000521220.1_1_8:27593735-27605871:-|nuORF	ENST00000521220.1_1_8:27593735-27605871:-|nuORF	ENST00000521220.1_1_8:27593735-27605871:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	498.844428	995.674303	0.37298	0.00018606	-0.41123	-0.00020514	-0.038248	-1.908E-05	498.84410078378676	43.873	0.44552	43.95	43.71	44.155	0.077515	0.012657	-7.2716E-06	NaN	0.52476	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406590			32972	11487	19202	19203							0.17629257793180386
PLKVKIVTV	9	Unmodified	_PLKVKIVTV_					0	0	0		ENST00000521220.1_1_8:27593735-27605871:-|nuORF	ENST00000521220.1_1_8:27593735-27605871:-|nuORF	ENST00000521220.1_1_8:27593735-27605871:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.844428	995.674303	0.36617	0.00018266	-0.58587	-0.00029226	-0.2197	-0.00010959	498.84404618756014	43.84	0.44573	43.924	43.657	44.103	0.083996	-0.013354	-0.00018151	NaN	0.52476	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453280			32973	11487	19202	19203							0.17629257793180386
PLLAEQLKDPL	11	Unmodified	_PLLAEQLKDPL_					0	0	0			REV__ENSG00000219073|ENST00000337107|CELA3B	REV__ENSG00000219073|ENST00000337107|CELA3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.86376953125	2	618.863546	1235.71254	0.48772	0.00030183	-0.2667	-0.00016505	0.22102	0.00013678	618.8632731449724	53.849	0.75333	53.849	53.595	54.348	0					64	27	3	0	0	0	0.37585	1	12754	12754		14.405	7.3037	1	1215700	+		32974	19089	19203	19204	40308	40308					0.1041109891718861
PLLAEQLKDPL	11	Unmodified	_PLLAEQLKDPL_					0	0	0			REV__ENSG00000219073|ENST00000337107|CELA3B	REV__ENSG00000219073|ENST00000337107|CELA3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.8637084960938	2	618.863546	1235.71254	0.3341	0.00020676	-0.15087	-9.337E-05	0.18323	0.00011339	618.863415794904	53.912	0.91774	53.902	53.611	54.529	-0.0096054					74	32	4	0	0	0	0.43508	1	12791	12791		6.6304	2.4409	1	1361600	+		32975	19089	19203	19204	40309	40309					0.1041109891718861
PLLARARHAA	10	Unmodified	_PLLARARHAA_					0	0	0			REV__nc|ENSG00000198276|Q9NWZ5-2|UCKL1	REV__nc|ENSG00000198276|Q9NWZ5-2|UCKL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8630981445312	2	538.327799	1074.64105	0.66936	0.00036033	-2.0864	-0.0011231	-1.417	-0.00076281	538.3266050860793	91.533	0.23618	91.534	91.481	91.717	0.00047302					20	17	2	0	0	0	0.39745	1	24295	24295		3.9444	1.0552	1	116610	+		32976	23161	19204	19205	40310	40310					0.1067106879381754
PLLARRRTLTR	11	Unmodified	_PLLARRRTLTR_					0	0	0		ENSG00000060709|ENST00000690449|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.6245422363281	3	451.624755	1351.85244	0.030892	1.3951E-05	-0.91556	-0.00041349	-0.88467	-0.00039954	451.6244220081687	41.972	1.0591	41.972	41.757	42.816	0					87	40	3	0	0	0	0.46218	2	9084	9084;9139		3.0723	1.6171	1	921750			32977	751	19205	19206	40311;40312	40311					0.19058320764906966
PLLARRRTLTR	11	Unmodified	_PLLARRRTLTR_					0	0	0		ENSG00000060709|ENST00000690449|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.62469482421875	3	451.624755	1351.85244	0.26883	0.00012141	-1.5078	-0.00068097	-1.239	-0.00055956	451.62440225706007	41.831	1.1571	41.921	41.77	42.927	0.090252					114	42	4	0	0	0	0.46218	1	9068	9068		3.0723	1.6171	1	1586900			32978	751	19205	19206	40313	40313					0.19058320764906966
PLLARRRTLTR	11	Unmodified	_PLLARRRTLTR_					0	0	0		ENSG00000060709|ENST00000690449|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	ENSG00000060709|ENST00000690449|RIMBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.62481689453125	3	451.624755	1351.85244	0.41573	0.00018776	-0.90305	-0.00040784	-0.48732	-0.00022009	451.62441747242127	41.81	1.0017	41.906	41.748	42.749	0.096626					74	35	3	0	0	0	0.46218	1	9036	9036		3.0723	1.6171	1	840480			32979	751	19205	19206	40314	40314					0.19058320764906966
PLLARSLPS	9	Unmodified	_PLLARSLPS_					0	0	0		ENST00000469172.5_1_10:70091580-70091955:+|nuORF	ENST00000469172.5_1_10:70091580-70091955:+|nuORF	ENST00000469172.5_1_10:70091580-70091955:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.77789306640625	2	477.292559	952.570566	0.50618	0.00024159	-1.7584	-0.00083929	-1.2523	-0.0005977	477.2924390667779	20.581	0.25925	20.471	20.407	20.666	-0.11003					10	8	2	0	0	0	0.19747	1	2598	2598		24.021	5.8856	1	51786			32980	10851	19206	19207	40315	40315					0.09238350685518526
PLLASPPLF	9	Unmodified	_PLLASPPLF_					0	0	0			REV__ENSG00000104856|ENST00000221452|RELB	REV__ENSG00000104856|ENST00000221452|RELB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2295227050781	2	477.786579	953.558604	0.11668	5.5747E-05	4.2887	0.0020491	4.4054	0.0021048	477.78842588919866	73.227	0.13584	73.281	73.2	73.335	0.053833					6	4	2	0	0	0	0.23147	1	18696	18696		19.439	5.9311	1	18793	+		32981	14423	19207	19208	40316	40316					0.07996733942320589
PLLAVGSEMI	10	Unmodified	_PLLAVGSEMI_					0	0	0			REV__nc|ENSG00000172831|O00748-2|CES2	REV__nc|ENSG00000172831|O00748-2|CES2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.786865234375	2	515.286085	1028.55762	0.30375	0.00015652	0.66938	0.00034492	0.97313	0.00050144	515.2858242375755	80.87	0.90868	80.87	80.569	81.478	0					79	42	3	0	0	0	0.31165	1	21138	21138		15.847	0	1	312460	+		32982	17739	19208	19209	40317	40317					0.044481515111101544
PLLAVKRLV	9	Unmodified	_PLLAVKRLV_					0	0	0			REV__ENST00000312521.8_1_3:24020009-24020150:+|nuORF	REV__ENST00000312521.8_1_3:24020009-24020150:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2469787597656	2	504.850045	1007.68554	0.5962	0.00030099	-0.86157	-0.00043496	-0.26537	-0.00013397	504.84942979084013	32.313	0.26928	32.313	32.171	32.44	0					14	9	2	0	0	0	0.25811	1	6109	6109		5.2307	0	1	102230	+		32983	19910	19209	19210	40318	40318					0.18200079887321863
PLLCPGWPHII	11	Unmodified	_PLLCPGWPHII_					0	0	0			REV__nc|ENSG00000154639|P78310-4|CXADR	REV__nc|ENSG00000154639|P78310-4|CXADR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.3435668945312	2	623.344269	1244.67399	0.16609	0.00010353	-0.82894	-0.00051672	-0.66285	-0.00041318	623.3437460060044	71.98	1.091	72.037	71.513	72.604	0.056572					78	39	3	0	0	0	0.36487	1	18293	18293		15.847	3.6065	1	501660	+		32984	23035	19210	19211	40319	40319					0.061435148016698804
PLLCPGWPHII	11	Unmodified	_PLLCPGWPHII_					0	0	0			REV__nc|ENSG00000154639|P78310-4|CXADR	REV__nc|ENSG00000154639|P78310-4|CXADR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	623.344269	1244.67399	0.38976	0.00024296	-0.97682	-0.00060889	-0.58706	-0.00036594	623.343605464686	71.938	1.0628	71.938	71.55	72.613	0	-0.061426	-1.205E-05	NaN	15.847	66	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388970	+		32985	23035	19210	19211							0.061435148016698804
PLLCPGWPHII	11	Unmodified	_PLLCPGWPHII_					0	0	0			REV__nc|ENSG00000154639|P78310-4|CXADR	REV__nc|ENSG00000154639|P78310-4|CXADR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	623.344269	1244.67399	0.28571	0.0001781	-1.0534	-0.00065665	-0.76772	-0.00047855	623.3436178824073	72.051	1.2629	72.023	71.506	72.769	-0.027275	0.023994	-0.00010756	NaN	15.847	92	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	527020	+		32986	23035	19210	19211							0.061435148016698804
PLLDPQQLL	9	Unmodified	_PLLDPQQLL_					0	0	0			REV__CNOT11|p.R492Lfs*14|1|0.04|ENSG00000158435|chr2:101269354-101269355|-/T|frameshift_variant	REV__CNOT11|p.R492Lfs*14|1|0.04|ENSG00000158435|chr2:101269354-101269355|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2888793945312	2	518.8055	1035.59645	0.639	0.00033152	-1.0024	-0.00052004	-0.36338	-0.00018853	518.8051334079411	54.713	0.59076	54.697	54.389	54.98	-0.015923					58	20	4	0	0	0	0.20626	1	12975	12975		22.736	3.2973	1	788540	+		32987	13236	19211	19212	40320	40320					0.08007200137149084
PLLDWQGIF	9	Unmodified	_PLLDWQGIF_					0	0	0		ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2953491210938	2	544.792392	1087.57023	0.066517	3.6238E-05	1.1851	0.00064562	1.2516	0.00068185	545.2952229079684	114.48	0.38183	114.48	114.25	114.64	0					72	46	2	0	0	0	0.32733	1	29669	29669		4.756	0.42677	1	31816			32988	8453	19212	19213	40321	40321					0.029949309656331025
PLLDWQGIF	9	Unmodified	_PLLDWQGIF_					0	0	0		ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7919921875	2	544.792392	1087.57023	0.38166	0.00020793	0.59104	0.00032199	0.9727	0.00052992	544.7919209096173	119.16	0.73373	119.14	118.9	119.63	-0.024155					132	91	2	0	0	0	0.32733	1	30762	30762		4.756	0.81161	1	17232			32989	8453	19212	19213	40322	40322					0.029949309656331025
PLLDWQGIF	9	Unmodified	_PLLDWQGIF_					0	0	0		ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2511596679688	2	544.792392	1087.57023	0.53119	0.00028939	-0.24923	-0.00013578	0.28196	0.00015361	544.7919991097646	73.256	1.4921	73.31	72.459	73.951	0.053833					101	53	3	0	0	0	0.14099	1	18448	18448		26.884	5.137	1	293180			32990	8453	19212	19213	40323	40323					0.029949309656331025
PLLDWQGIF	9	Unmodified	_PLLDWQGIF_					0	0	0		ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7918090820312	2	544.792392	1087.57023	0.55283	0.00030118	0.28402	0.00015473	0.83684	0.00045591	544.7918636130829	116.69	0.23193	116.71	116.64	116.88	0.020996					37	28	2	0	0	0	0.34809	1	30282	30282		1.6526	0.17072	1	25414			32991	8453	19212	19213	40324	40324					0.029949309656331025
PLLDWQGIF	9	Unmodified	_PLLDWQGIF_					0	0	0		ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3170166015625	2	544.792392	1087.57023	0.55378	0.0003017	0.8864	0.0004829	1.4402	0.0007846	545.2951546519955	113.95	0.22882	113.96	113.84	114.07	0.016701					39	27	2	0	0	0	0.26145	1	29643	29643		2.0598	0	1	49258			32992	8453	19212	19213	40325	40325					0.029949309656331025
PLLDWQGIF	9	Unmodified	_PLLDWQGIF_					0	0	0		ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	544.792392	1087.57023	0.363	0.00019776	-0.27427	-0.00014942	0.088726	4.8337E-05	544.7919684952257	73.265	1.3234	73.265	72.775	74.098	0	-0.036448	-5.0278E-06	NaN	26.884	102	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327320			32993	8453	19212	19213							0.029949309656331025
PLLDWQGIF	9	Unmodified	_PLLDWQGIF_					0	0	0		ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.792392	1087.57023	0.38166	0.00020793	0.59104	0.00032199	0.9727	0.00052992	544.7919209096173	119.16	0.73373	119.14	118.9	119.63	-0.024155	0	0	NaN	4.756	132	91	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17232			32994	8453	19212	19213							0.029949309656331025
PLLEEVPLKL	10	Unmodified	_PLLEEVPLKL_					0	0	0			REV__ENST00000334146.7_2_17:1617148-1617241:-|nuORF	REV__ENST00000334146.7_2_17:1617148-1617241:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8565673828125	2	575.857732	1149.70091	0.27194	0.0001566	-2.2277	-0.0012828	-1.9558	-0.0011262	575.8562814011402	35.443	0.55525	35.519	35.261	35.816	0.075306					32	19	2	0	0	0	0.38233	1	7115	7115		6.7232	1.9672	1	513880	+		32995	20058	19213	19214	40326	40326					0.13204901893846
PLLEEVPLKL	10	Unmodified	_PLLEEVPLKL_					0	0	0			REV__ENST00000334146.7_2_17:1617148-1617241:-|nuORF	REV__ENST00000334146.7_2_17:1617148-1617241:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	575.857732	1149.70091	0.27194	0.0001566	-2.2277	-0.0012828	-1.9558	-0.0011262	575.8562814011402	35.443	0.55525	35.519	35.261	35.816	0.075306	-0.023436	-0.00024096	NaN	6.7232	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513880	+		32996	20058	19213	19214							0.13204901893846
PLLFAIICKKE	11	Unmodified	_PLLFAIICKKE_					0	0	0		nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1;ENST00000427650.2_1_9:69386004-69400453:+|nuORF	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.8823852539062	2	637.880684	1273.74682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.397	1	95.397	94.897	95.897	0								0	0	0	0.37609	1	25464	25464		2.4985	0.84587	1				32997	8654	19214	19215	40327	40327					0.12089223804446192
PLLFEVSSL	9	Unmodified	_PLLFEVSSL_					0	0	0		ENSG00000115827|ENST00000375255|DCAF17;nc|ENSG00000115827|Q5H9S7-2|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7931213378906	2	502.786776	1003.559	0.31432	0.00015803	-2.677	-0.001346	-2.3627	-0.0011879	503.2855734885694	81.212	0.61232	81.212	81.108	81.72	0					39	26	2	0	0	0	0.18943	1	21267	21267		30.225	4.8255	1	142970			32998	2679	19215	19216	40328	40328					0.057361088715197184
PLLFEVSSL	9	Unmodified	_PLLFEVSSL_					0	0	0		ENSG00000115827|ENST00000375255|DCAF17;nc|ENSG00000115827|Q5H9S7-2|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	ENSG00000115827|ENST00000375255|DCAF17	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	502.786776	1003.559	0.33507	0.00016847	-2.7134	-0.0013642	-2.3783	-0.0011958	503.28567341163534	81.094	0.9091	81.068	80.704	81.613	-0.026817	-0.132	-9.2967E-05	NaN	30.225	57	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252360			32999	2679	19215	19216							0.057361088715197184
PLLFNNRQNL	10	Unmodified	_PLLFNNRQNL_					0	0	0			REV__ENSG00000133116|ENST00000380099|KL	REV__ENSG00000133116|ENST00000380099|KL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2311096191406	3	410.231412	1227.67241	-0.45807	-0.00018792	1.1713	0.00048049	0.71321	0.00029258	410.2318677865062	103.63	0.39386	103.63	103.56	103.95	0					78	55	2	0	0	0	0.40943	1	27604	27604		1.7423	0	1	5401600	+		33000	15609	19216	19217	40329	40329					0.06767597037287487
PLLFPYLSI	9	Unmodified	_PLLFPYLSI_					0	0	0			REV__ENSG00000135966|ENST00000393359|TGFBRAP1	REV__ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2820434570312	2	531.815336	1061.61612	0.65898	0.00035045	-3.6405	-0.0019361	-2.9816	-0.0015856	531.8146321326235	87.532	0.64562	87.532	87.119	87.765	0					41	29	2	0	0	0	0.24913	1	23028	23028		12.532	3.9383	1	138950	+		33001	15774	19217	19218	40330	40330					0.08777576147895161
PLLFPYLSI	9	Unmodified	_PLLFPYLSI_					0	0	0			REV__ENSG00000135966|ENST00000393359|TGFBRAP1	REV__ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	531.815336	1061.61612	0.5801	0.0003085	-2.0702	-0.001101	-1.4901	-0.00079246	531.8150598199214	87.612	0.59427	87.606	87.317	87.912	-0.0056229	0.049167	0.00045557	NaN	12.532	53	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170470	+		33002	15774	19217	19218							0.08777576147895161
PLLGLLRRWF	10	Unmodified	_PLLGLLRRWF_					0	0	0			REV__nc|ENSG00000087157|Q32NB8-4|PGS1	REV__nc|ENSG00000087157|Q32NB8-4|PGS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.6065673828125	3	424.264276	1269.771	-0.053212	-2.2576E-05	-0.6223	-0.00026402	-0.67551	-0.00028659	424.2637041875907	37.834	0.51979	37.931	37.682	38.202	0.097527					30	18	3	0	0	0	0.32051	1	7896	7896		3.8763	0.55669	1	167480	+		33003	13988	19218	19219	40331	40331					0.1469024507296126
PLLGPLQL	8	Unmodified	_PLLGPLQL_					0	0	0			REV__ENST00000576351.5_2_17:3486716-3491620:-|nuORF	REV__ENST00000576351.5_2_17:3486716-3491620:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.7731628417969	2	425.773471	849.53239	-0.026956	-1.1477E-05	-0.16054	-6.8352E-05	-0.18749	-7.9829E-05	425.7733544156136	74.129	0.8755	74.129	73.828	74.703	0					45	29	2	0	0	0	0.2157	1	18950	18950		40.449	0	1	667900	+		33004	22451	19219	19220	40332	40332					0.10160464770854105
PLLGPLQL	8	Unmodified	_PLLGPLQL_					0	0	0			REV__ENST00000576351.5_2_17:3486716-3491620:-|nuORF	REV__ENST00000576351.5_2_17:3486716-3491620:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.773193359375	2	425.773471	849.53239	-0.15443	-6.5752E-05	0.15713	6.69E-05	0.0026955	1.1477E-06	425.77347054876526	74.108	0.90726	74.16	73.796	74.703	0.052361					45	30	2	0	0	0	0.10409	1	18980	18980		59.795	0	1	557630	+		33005	22451	19219	19220	40333	40333					0.10160464770854105
PLLGPLQL	8	Unmodified	_PLLGPLQL_					0	0	0			REV__ENST00000576351.5_2_17:3486716-3491620:-|nuORF	REV__ENST00000576351.5_2_17:3486716-3491620:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.773193359375	2	425.773471	849.53239	-0.00070239	-2.9906E-07	-0.016753	-7.1331E-06	-0.017456	-7.4322E-06	425.7733731374653	74.146	0.98582	74.116	73.827	74.813	-0.030663					47	34	2	0	0	0	0.16192	2	18970	18970;19022		49.669	0	1	603660	+		33006	22451	19219	19220	40334;40335	40334					0.10160464770854105
PLLGPLQL	8	Unmodified	_PLLGPLQL_					0	0	0			REV__ENST00000576351.5_2_17:3486716-3491620:-|nuORF	REV__ENST00000576351.5_2_17:3486716-3491620:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	425.773471	849.53239	-0.026956	-1.1477E-05	-0.16054	-6.8352E-05	-0.18749	-7.9829E-05	425.7733544156136	74.129	0.8755	74.129	73.828	74.703	0	-0.0056351	-0.00014622	NaN	59.795	45	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	667900	+		33007	22451	19219	19220							0.10160464770854105
PLLGPLQL	8	Unmodified	_PLLGPLQL_					0	0	0			REV__ENST00000576351.5_2_17:3486716-3491620:-|nuORF	REV__ENST00000576351.5_2_17:3486716-3491620:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	425.773471	849.53239	-0.00070239	-2.9906E-07	-0.016753	-7.1331E-06	-0.017456	-7.4322E-06	425.7733731374653	74.146	0.98582	74.116	73.827	74.813	-0.030663	-0.019396	-2.3781E-05	NaN	59.795	47	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	603660	+		33008	22451	19219	19220							0.10160464770854105
PLLHFSAI	8	Unmodified	_PLLHFSAI_					0	0	0			REV__LTR88b_dup1331|chr15:56885665-56885983:-|1.923023994396776|0.0198811332927147|6.6|542.0|17|3|anti-sense	REV__LTR88b_dup1331|chr15:56885665-56885983:-|1.923023994396776|0.0198811332927147|6.6|542.0|17|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2812805175781	2	449.263271	896.511988	0.23044	0.00010353	0.20918	9.3975E-05	0.43962	0.0001975	449.2631544727254	58.739	0.59336	58.83	58.645	59.238	0.091301					47	20	3	0	0	0	0.38703	1	14314	14314		20.871	0	1	473600	+		33009	22849	19220	19221	40336	40336					0.05959294111039526
PLLHILTT	8	Unmodified	_PLLHILTT_					0	0	0		ENST00000335281.8_1_14:52327279-52327504:+|nuORF	ENST00000335281.8_1_14:52327279-52327504:+|nuORF	ENST00000335281.8_1_14:52327279-52327504:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.28399658203125	2	454.284203	906.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.017	1	88.014	87.514	88.514	-0.0028381								0	0	0	0.37078	1	23219	23219		5.2307	0	1				33010	9478	19221	19222	40337	40337					0.0968384979955772
PLLHNYVT	8	Unmodified	_PLLHNYVT_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000205339|ENST00000379719|IPO7;ENSG00000133704|ENST00000256079|IPO8	ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7821044921875	2	478.763635	955.512717	0.36001	0.00017236	0.28976	0.00013872	0.64977	0.00031109	478.76371141560764	65.642	0.95375	65.73	65.519	66.472	0.088882					49	34	2	0	0	0	0.33995	1	16503	16503		5.7604	0	1	880090			33011	8284;3725	19222	19223	40338	40338					0.03318088760090632
PLLHPVRP	8	Unmodified	_PLLHPVRP_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.229736328125	2	464.789987	927.565421	-1.2548	-0.00058324	-0.83251	-0.00038694	-2.0874	-0.00097019	464.78949955412526	35.028	0.43651	35.028	34.839	35.276	0					32	15	3	0	0	0	0.34185	1	7037	7037		5.7604	0	1	256640			33012	2347	19223	19224	40339	40339					0.09874091613551172
PLLHPVRP	8	Unmodified	_PLLHPVRP_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	464.789987	927.565421	-0.80275	-0.00037311	-1.5674	-0.0007285	-2.3701	-0.0011016	464.78922228225423	34.862	0.43963	34.939	34.755	35.195	0.077377	-0.043142	-0.00054478	NaN	5.7604	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237600			33013	2347	19223	19224							0.09874091613551172
PLLIAHVWSTF	11	Unmodified	_PLLIAHVWSTF_					0	0	0			REV__ENST00000493726.1_1_3:197547243-197549808:+|nuORF	REV__ENST00000493726.1_1_3:197547243-197549808:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.77862548828125	3	428.576408	1282.70739	-0.31893	-0.00013669	-0.048143	-2.0633E-05	-0.36707	-0.00015732	428.57633844074854	65.268	0.63385	65.268	64.884	65.518	0					36	22	2	0	0	0	0.33085	1	16338	16338		2.8433	0	1	149790	+		33014	21643	19224	19225	40340	40340					0.07734839845215902
PLLIAQVKI	9	Unmodified	_PLLIAQVKI_					0	0	0			REV__ENST00000421540.1_1_20:34280185-34287249:-|nuORF	REV__ENST00000421540.1_1_20:34280185-34287249:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.29241943359375	2	497.836603	993.658653	0.58099	0.00028924	-0.21756	-0.00010831	0.36343	0.00018093	497.83646064803503	66.056	0.77116	66.14	65.888	66.659	0.083832					39	27	2	0	0	0	0.22596	1	16529	16529		21.747	0	1	200080	+		33015	20868	19225	19226	40341	40341					0.16156971276120657
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8429565429688	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.91	1	115.91	115.41	116.41	0								0	0	0	0.38126	1	30027	30027		1.6526	0	1		+		33016	19838	19226	19227	40342	40342					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8427734375	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.09	1	117.09	116.59	117.59	0								0	0	0	0.38126	1	30293	30293		1.6526	0	1		+		33017	19838	19226	19227	40343	40343					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8428344726562	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.2	1	117.2	116.7	117.7	0								0	0	0	0.38126	1	30319	30319		1.6526	0	1		+		33018	19838	19226	19227	40344	40344					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.843017578125	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.41	1	117.41	116.91	117.91	0								0	0	0	0.38126	1	30364	30364		1.6526	0	1		+		33019	19838	19226	19227	40345	40345					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8421020507812	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.58	1	117.58	117.08	118.08	0								0	0	0	0.38126	1	30402	30402		1.6526	0	1		+		33020	19838	19226	19227	40346	40346					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8427124023438	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.74	1	117.74	117.24	118.24	0								0	0	0	0.38126	1	30438	30438		1.6526	0	1		+		33021	19838	19226	19227	40347	40347					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8428344726562	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.3	1	118.3	117.8	118.8	0								0	0	0	0.38126	1	30562	30562		1.6526	0	1		+		33022	19838	19226	19227	40348	40348					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8426513671875	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.83	1	119.83	119.33	120.33	0								0	0	0	0.38126	1	30899	30899		1.6526	0	1		+		33023	19838	19226	19227	40349	40349					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.842529296875	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.64	1	112.63	112.13	113.13	-0.015625								0	0	0	0.38126	1	29298	29298		1.6526	0	1		+		33024	19838	19226	19227	40350	40350					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8432006835938	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.26	1	115.24	114.74	115.74	-0.020988								0	0	0	0.38126	1	29894	29894		1.6526	0	1		+		33025	19838	19226	19227	40351	40351					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8432006835938	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.39	1	115.37	114.87	115.87	-0.020988								0	0	0	0.38126	1	29926	29926		1.6526	0	1		+		33026	19838	19226	19227	40352	40352					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8428344726562	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.44	1	116.42	115.92	116.92	-0.022781								0	0	0	0.38126	1	30165	30165		1.6526	0	1		+		33027	19838	19226	19227	40353	40353					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8426513671875	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.73	1	116.71	116.21	117.21	-0.022781								0	0	0	0.38126	1	30230	30230		1.6526	0	1		+		33028	19838	19226	19227	40354	40354					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8429565429688	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.04	1	117.02	116.52	117.52	-0.022781								0	0	0	0.38126	1	30306	30306		1.6526	0	1		+		33029	19838	19226	19227	40355	40355					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8427124023438	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.43	1	117.41	116.91	117.91	-0.024147								0	0	0	0.38126	1	30395	30395		1.6526	0	1		+		33030	19838	19226	19227	40356	40356					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8433837890625	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.76	1	118.73	118.23	119.23	-0.024147								0	0	0	0.38126	1	30684	30684		1.6526	0	1		+		33031	19838	19226	19227	40357	40357					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8428344726562	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.08	1	115.1	114.6	115.6	0.018738								0	0	0	0.38126	1	29910	29910		1.6526	0	1		+		33032	19838	19226	19227	40358	40358					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8426513671875	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.49	1	116.52	116.02	117.02	0.020988								0	0	0	0.38126	1	30224	30224		1.6526	0	1		+		33033	19838	19226	19227	40359	40359					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8427734375	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.72	1	116.74	116.24	117.24	0.020988								0	0	0	0.38126	1	30278	30278		1.6526	0	1		+		33034	19838	19226	19227	40360	40360					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8427124023438	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.53	1	117.56	117.06	118.06	0.023476								0	0	0	0.38126	1	30461	30461		1.6526	0	1		+		33035	19838	19226	19227	40361	40361					0.10690847091268552
PLLIRDLDPV	10	Unmodified	_PLLIRDLDPV_					0	0	0			REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	REV__ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8431396484375	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.82	1	118.85	118.35	119.35	0.026253								0	0	0	0.38126	1	30757	30757		1.6526	0	1		+		33036	19838	19226	19227	40362	40362					0.10690847091268552
PLLKESSTF	9	Unmodified	_PLLKESSTF_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.25433349609375	2	511.281857	1020.54916	0.41816	0.0002138	-0.80212	-0.00041011	-0.38395	-0.00019631	511.281337983879	72.099	0.45676	72.155	72.005	72.462	0.056572					21	16	2	0	0	0	0.25622	1	18312	18312		7.2892	1.5288	1	131080			33037	7842	19227	19228	40363	40363					0.03970920866140659
PLLKKPNSVK	10	Unmodified	_PLLKKPNSVK_					0	0	0		nc|ENSG00000123243|Q86UX2-2|ITIH5	nc|ENSG00000123243|Q86UX2-2|ITIH5	nc|ENSG00000123243|Q86UX2-2|ITIH5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3610229492188	2	562.363516	1122.71248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.312	1	98.373	97.873	98.873	0.061516								0	0	0	0.37664	1	26313	26313		3.5965	1.9439	1				33038	12682	19228	19229	40364	40364					0.15603143707835443
PLLKPAVIS	9	Unmodified	_PLLKPAVIS_					0	0	0		nc|ENSG00000167377|P17027|ZNF23;ENSG00000167377|ENST00000647773|ZNF23	nc|ENSG00000167377|P17027|ZNF23	nc|ENSG00000167377|P17027|ZNF23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.3076477050781	2	469.307678	936.600803	-0.092922	-4.3609E-05	0.060395	2.8344E-05	-0.032527	-1.5265E-05	469.30759215117837	61.677	1.3964	61.677	61.155	62.552	0					130	52	4	0	0	0	0.034444	1	15201	15201		58.679	10.93	1	4327600			33039	6172	19229	19230	40365	40365					0.12996709350693436
PLLKPAVIS	9	Unmodified	_PLLKPAVIS_					0	0	0		nc|ENSG00000167377|P17027|ZNF23;ENSG00000167377|ENST00000647773|ZNF23	nc|ENSG00000167377|P17027|ZNF23	nc|ENSG00000167377|P17027|ZNF23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.3075256347656	2	469.307678	936.600803	-0.25798	-0.00012107	0.24236	0.00011374	-0.015622	-7.3314E-06	469.3076543457125	61.579	1.4291	61.676	61.116	62.546	0.096985					125	52	4	0	0	0	0.034444	2	15199	15106;15199		58.679	8.7458	1	4552800			33040	6172	19229	19230	40366;40367	40367					0.12996709350693436
PLLLGRSLP	9	Unmodified	_PLLLGRSLP_					0	0	0		ENST00000596243.5_1_19:50382004-50382127:+|nuORF	ENST00000596243.5_1_19:50382004-50382127:+|nuORF	ENST00000596243.5_1_19:50382004-50382127:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.75616455078125	2	483.310752	964.606951	0.27407	0.00013246	-3.6877	-0.0017823	-3.4136	-0.0016498	483.31066313326016	52.626	0.69121	52.626	52.296	52.987	0					75	24	4	0	0	0	0.1854	1	12405	12405		25.399	0	1	1583000			33041	12226	19230	19231	40368	40368					0.12323227582214713
PLLLGRSLP	9	Unmodified	_PLLLGRSLP_					0	0	0		ENST00000596243.5_1_19:50382004-50382127:+|nuORF	ENST00000596243.5_1_19:50382004-50382127:+|nuORF	ENST00000596243.5_1_19:50382004-50382127:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.3005065917969	2	483.310752	964.606951	0.37251	0.00018004	-3.4184	-0.0016521	-3.0459	-0.0014721	483.3106325335959	52.577	0.82368	52.628	52.282	53.106	0.050571					81	29	4	0	0	0	0.27532	1	12457	12457		12.532	0	1	1663500			33042	12226	19230	19231	40369	40369					0.12323227582214713
PLLLGRSLP	9	Unmodified	_PLLLGRSLP_					0	0	0		ENST00000596243.5_1_19:50382004-50382127:+|nuORF	ENST00000596243.5_1_19:50382004-50382127:+|nuORF	ENST00000596243.5_1_19:50382004-50382127:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.756103515625	2	483.310752	964.606951	0.19703	9.5227E-05	-3.8359	-0.0018539	-3.6389	-0.0017587	483.31064326520345	52.641	0.85223	52.64	52.274	53.126	-0.00081253					84	30	4	0	0	0	0.21389	1	12441	12441		25.399	0	1	1752600			33043	12226	19230	19231	40370	40370					0.12323227582214713
PLLLHPII	8	Unmodified	_PLLLHPII_					0	0	0		HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|9|1|sense	HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|9|1|sense	HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|9|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.3048400878906	2	458.304939	914.595324	0.095722	4.387E-05	-0.076019	-3.484E-05	0.019703	9.0301E-06	458.30471468034943	76.7	1.0355	76.7	76.22	77.256	0					81	37	3	0	0	0	0.20676	2	19797	19632;19797		41.817	0	1	723090			33044	12403	19231	19232	40371;40372	40372					0.1346103055890353
PLLLHPII	8	Unmodified	_PLLLHPII_					0	0	0		HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|9|1|sense	HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|9|1|sense	HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|9|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.3049621582031	2	458.304939	914.595324	0.11248	5.1552E-05	-0.060017	-2.7506E-05	0.052467	2.4046E-05	458.3048376058803	75.579	1.2118	75.631	75.076	76.288	0.052361					126	43	5	0	0	0	0.1467	2	19526	19526;19581		52.334	0	1	6472300			33045	12403	19231	19232	40373;40374	40373					0.1346103055890353
PLLLHPII	8	Unmodified	_PLLLHPII_					0	0	0		HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|9|1|sense	HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|9|1|sense	HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|9|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.3047790527344	2	458.304939	914.595324	-0.0095766	-4.389E-06	0.021999	1.0082E-05	0.012422	5.6931E-06	458.304783006377	76.66	1.2195	76.713	76.289	77.508	0.053421					82	43	3	0	0	0	0.1467	1	19709	19709		52.334	0	1	613570			33046	12403	19231	19232	40375	40375					0.1346103055890353
PLLLHPII	8	Unmodified	_PLLLHPII_					0	0	0		HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|9|1|sense	HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|9|1|sense	HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|9|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.3047790527344	2	458.304939	914.595324	0.22041	0.00010101	-0.10824	-4.9606E-05	0.11217	5.1407E-05	458.3048100687731	75.692	1.2384	75.66	75.184	76.422	-0.031479					125	45	4	0	0	0	0.1467	2	19371	19371;19566		52.334	0	1	4691100			33047	12403	19231	19232	40376;40377	40376					0.1346103055890353
PLLLHPII	8	Unmodified	_PLLLHPII_					0	0	0		HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|9|1|sense	HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|9|1|sense	HERVH-int_dup4295|chr11:71737927-71740823:+|2.9111428382893654|0.2495776091037528|3.54|531.0|9|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.3049621582031	2	458.304939	914.595324	0.36204	0.00016592	-0.29927	-0.00013716	0.062766	2.8766E-05	458.30462256641573	76.779	0.84238	76.748	76.395	77.237	-0.031479					71	30	3	0	0	0	0.33618	1	19825	19825		17.087	0	1	516150			33048	12403	19231	19232	40378	40378					0.1346103055890353
PLLLKLCF	8	Unmodified	_PLLLKLCF_					0	0	0			REV__nc|ENSG00000271605|Q7Z6M3-2|MILR1	REV__nc|ENSG00000271605|Q7Z6M3-2|MILR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2530212402344	2	473.793349	945.572146	0.37664	0.00017845	-0.24334	-0.00011529	0.1333	6.3158E-05	473.7930528803179	78.866	1.0253	78.866	78.415	79.441	0					108	41	4	0	0	0	0.3439	1	20292	20292		2.8892	0	1	535670	+		33049	19314	19232	19233	40379	40379					0.09718268449910283
PLLLLAAL	8	Unmodified	_PLLLLAAL_					0	0	0			REV__ENSG00000112212|ENST00000373161|TSPO2	REV__ENSG00000112212|ENST00000373161|TSPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2861633300781	2	412.286214	822.557876	0.1906	7.858E-05	-0.13312	-5.4883E-05	0.057476	2.3696E-05	412.2860383812079	92.71	0.74947	92.8	92.465	93.214	0.089203					183	60	4	0	0	0	0.079765	2	24679	24638;24679		64.081	0	1	907450	+		33050	13082	19233	19234	40380;40381	40381					0.139499392932521
PLLLLAAL	8	Unmodified	_PLLLLAAL_					0	0	0			REV__ENSG00000112212|ENST00000373161|TSPO2	REV__ENSG00000112212|ENST00000373161|TSPO2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	412.286214	822.557876	-0.12039	-4.9636E-05	0.13429	5.5365E-05	0.013898	5.7298E-06	412.2861632677314	92.821	0.72863	92.821	92.495	93.224	0	0.013159	0.00020434	NaN	64.081	153	59	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	466250	+		33051	13082	19233	19234							0.139499392932521
PLLLLAAL	8	Unmodified	_PLLLLAAL_					0	0	0			REV__ENSG00000112212|ENST00000373161|TSPO2	REV__ENSG00000112212|ENST00000373161|TSPO2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	412.286214	822.557876	0.1906	7.858E-05	-0.13312	-5.4883E-05	0.057476	2.3696E-05	412.2860383812079	92.71	0.74947	92.8	92.465	93.214	0.089203	-0.0082364	-1.6161E-05	NaN	64.081	183	60	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	907450	+		33052	13082	19233	19234							0.139499392932521
PLLLLAAL	8	Unmodified	_PLLLLAAL_					0	0	0			REV__ENSG00000112212|ENST00000373161|TSPO2	REV__ENSG00000112212|ENST00000373161|TSPO2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	412.286214	822.557876	0.32125	0.00013245	-0.27637	-0.00011394	0.044883	1.8505E-05	412.28597954896077	92.803	0.81995	92.803	92.462	93.282	0.00046539	-0.0049229	-0.00013428	NaN	64.081	174	68	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	779570	+		33053	13082	19233	19234							0.139499392932521
PLLLLFLW	8	Unmodified	_PLLLLFLW_					0	0	0			REV__ENSG00000135749|ENST00000258229|PCNX2	REV__ENSG00000135749|ENST00000258229|PCNX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.76251220703125	2	507.822964	1013.63138	0.22772	0.00011564	1.4281	0.00072525	1.6559	0.00084089	507.8237106527057	62.958	0.37116	62.95	62.705	63.076	-0.0085526					21	13	2	0	0	0	0.34147	1	15540	15540		6.3541	0	1	495210	+		33054	15761	19234	19235	40382	40382					0.1251048773574439
PLLLPPSL	8	Unmodified	_PLLLPPSL_					0	0	0			REV__chr1:117606153-117622842|495|10.76|0.01|10.68|+|1|TENT5C,TENT5C|1	REV__chr1:117606153-117622842|495|10.76|0.01|10.68|+|1|TENT5C,TENT5C|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.27569580078125	2	425.275847	848.537141	-0.077308	-3.2877E-05	0.1311	5.5754E-05	0.053794	2.2877E-05	425.27579334583254	80.522	0.77952	80.522	80.124	80.904	0					68	31	3	0	0	0	0.10409	1	20892	20892		59.795	0	1	1120200	+		33055	13156	19235	19236	40383	40383					0.10681348913624333
PLLLPPSL	8	Unmodified	_PLLLPPSL_					0	0	0			REV__chr1:117606153-117622842|495|10.76|0.01|10.68|+|1|TENT5C,TENT5C|1	REV__chr1:117606153-117622842|495|10.76|0.01|10.68|+|1|TENT5C,TENT5C|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.27569580078125	2	425.275847	848.537141	-0.030521	-1.298E-05	0.0099033	4.2116E-06	-0.020618	-8.7684E-06	425.2757389323125	80.536	0.75953	80.509	80.142	80.901	-0.026825					64	27	3	0	0	0	0.10409	1	20931	20931		59.795	0	1	986490	+		33056	13156	19235	19236	40384	40384					0.10681348913624333
PLLLQKKK	8	Unmodified	_PLLLQKKK_					0	0	0		ENSG00000106268|ENST00000356714|NUDT1;nc|ENSG00000106268|P36639-3|NUDT1;nc|ENSG00000106268|P36639-2|NUDT1;nc|ENSG00000106268|P36639-1|NUDT1	ENSG00000106268|ENST00000356714|NUDT1	ENSG00000106268|ENST00000356714|NUDT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.3082275390625	2	484.33677	966.658987	0.33072	0.00016018	-0.17821	-8.6312E-05	0.15252	7.3869E-05	484.33662454376906	72.713	0.5469	72.713	72.506	73.053	0					31	19	2	0	0	0	0.3439	1	18488	18488		2.8892	0	1	205120			33057	2067	19236	19237	40385	40385					0.1743239099597531
PLLNCLLSL	9	Unmodified	_PLLNCLLSL_					0	0	0		ENST00000257860.8_1_12:49692132-49692414:+|nuORF	ENST00000257860.8_1_12:49692132-49692414:+|nuORF	ENST00000257860.8_1_12:49692132-49692414:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.8019714355469	2	493.291171	984.567789	0.48833	0.00024089	3.3141	0.0016348	3.8024	0.0018757	493.2925054149775	82.429	0.19989	82.429	82.313	82.513	0					10	7	2	0	0	0	0.18943	1	21531	21531		30.225	7.0764	1	43997			33058	8941	19237	19238	40386	40386					0.07488759236355236
PLLNLVSPL	9	Unmodified	_PLLNLVSPL_					0	0	0		nc|ENSG00000215440|Q8NDH3-5|NPEPL1;nc|ENSG00000215440|Q8NDH3-4|NPEPL1;ENSG00000215440|ENST00000356091|NPEPL1;ENST00000529976.5_1_20:57290178-57290379:+|nuORF;ENST00000527587.5_1_20:57288690-57290379:+|nuORF	nc|ENSG00000215440|Q8NDH3-5|NPEPL1	nc|ENSG00000215440|Q8NDH3-5|NPEPL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.72607421875	2	483.305136	964.595718	0.45172	0.00021832	-0.54335	-0.0002626	-0.091624	-4.4282E-05	483.3047935750669	75.474	0.36662	75.443	75.159	75.525	-0.031479					18	13	2	0	0	0	0.25066	1	19308	19308		7.2892	2.96	1	102690			33059	8408	19238	19239	40387	40387					0.11200405488068554
PLLPFAFAF	9	Unmodified	_PLLPFAFAF_					0	0	0			REV__ENST00000399799.2_1_18:18690928-18691354:-|nuORF	REV__ENST00000399799.2_1_18:18690928-18691354:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.325927734375	2	511.789121	1021.56369	0.56977	0.0002916	1.2533	0.00064144	1.8231	0.00093305	511.78990178868287	84.283	0.51517	84.283	83.954	84.47	0					36	20	3	0	0	0	0.24542	1	22115	22115		14.582	1.0738	1	291400	+		33060	20695	19239	19240	40388	40388					0.0537703780494212
PLLPFAFAF	9	Unmodified	_PLLPFAFAF_					0	0	0			REV__ENST00000399799.2_1_18:18690928-18691354:-|nuORF	REV__ENST00000399799.2_1_18:18690928-18691354:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.3261108398438	2	511.789121	1021.56369	0.47135	0.00024123	0.94044	0.0004813	1.4118	0.00072254	511.7899170127936	84.094	0.41115	84.171	83.979	84.39	0.077095					30	16	2	0	0	0	0.24542	1	22071	22071		14.582	3.4672	1	207180	+		33061	20695	19239	19240	40389	40389					0.0537703780494212
PLLPGPGDPF	10	Unmodified	_PLLPGPGDPF_					0	0	0			REV__ENST00000602717.5_1_14:77743417-77745166:-|nuORF	REV__ENST00000602717.5_1_14:77743417-77745166:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2703857421875	2	505.271293	1008.52803	0.32778	0.00016562	-0.87944	-0.00044435	-0.55166	-0.00027874	505.2714115078545	81.6	0.96641	81.576	80.966	81.932	-0.02404					76	41	3	0	0	0	0.20278	2	21247	21229;21247		32.305	6.9062	1	761520	+		33062	22643	19240	19241	40390;40391	40391					0.02410955557274974
PLLPHPMM	8	Unmodified	_PLLPHPMM_					0	0	0			REV__nc|ENSG00000126733|Q96NX9-3|DACH2	REV__nc|ENSG00000126733|Q96NX9-3|DACH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.75555419921875	2	468.245709	934.476865	0.063779	2.9864E-05	-1.7402	-0.00081482	-1.6764	-0.00078496	468.24486218727964	65.66	0.48531	65.749	65.38	65.865	0.088875					28	17	2	0	0	0	0.34147	1	16282	16282		11.114	0	1	115330	+		33063	15318	19241	19242	40392	40392					0.007005919872199229
PLLPKSTI	8	Unmodified	_PLLPKSTI_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.80230712890625	2	434.778754	867.542954	0.026387	1.1472E-05	0.29781	0.00012948	0.3242	0.00014095	434.7788180282947	58.777	0.72515	58.762	58.523	59.248	-0.014267					39	25	2	0	0	0	0.34218	1	14206	14206		5.2307	0	1	304020			33064	638	19242	19243	40393	40393					0.10388447425293634
PLLPLLAAA	9	Unmodified	_PLLPLLAAA_					0	0	0			REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF	REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.23046875	2	439.789121	877.56369	0.14779	6.4997E-05	-0.44004	-0.00019353	-0.29225	-0.00012853	439.7887889432443	81.834	0.34704	81.81	81.637	81.984	-0.02404					17	13	2	0	0	0	0.22431	1	21339	21339		14.582	0	1	112690	+		33065	19716	19243	19244	40394	40394					0.12001037804941461
PLLPLSPL	8	Unmodified	_PLLPLSPL_					0	0	0			REV__ENST00000587170.1_1_18:47808965-47809781:-|nuORF	REV__ENST00000587170.1_1_18:47808965-47809781:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.275634765625	2	425.275847	848.537141	-0.077308	-3.2877E-05	0.1311	5.5754E-05	0.053794	2.2877E-05	425.27579334583254	80.522	0.77952	80.522	80.124	80.904	0					68	31	3	0	0	0	0.10409	2	20936	20936;20982		59.795	0	1	1120200	+		33066	22531	19244	19245	40395;40396	40395					0.10681348913624333
PLLPLSPL	8	Unmodified	_PLLPLSPL_					0	0	0			REV__ENST00000587170.1_1_18:47808965-47809781:-|nuORF	REV__ENST00000587170.1_1_18:47808965-47809781:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.27587890625	2	425.275847	848.537141	-0.030521	-1.298E-05	0.0099033	4.2116E-06	-0.020618	-8.7684E-06	425.2757389323125	80.536	0.75953	80.509	80.142	80.901	-0.026825					64	27	3	0	0	0	0.2705	1	20986	20986		34.187	0	1	986490	+		33067	22531	19244	19245	40397	40397					0.10681348913624333
PLLPLSRSL	9	Unmodified	_PLLPLSRSL_					0	0	0		ENST00000538009.5_1_11:72491938-72503953:-|nuORF	ENST00000538009.5_1_11:72491938-72503953:-|nuORF	ENST00000538009.5_1_11:72491938-72503953:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.3055114746094	2	498.316035	994.617516	0.33898	0.00016892	-0.90676	-0.00045185	-0.56778	-0.00028293	498.31593426227454	60.326	0.8926	60.314	59.968	60.86	-0.011486					115	32	4	0	0	0	0.17787	1	14835	14835		26.884	0	1	3363100			33068	11695	19245	19246	40398	40398					0.11999210236660929
PLLPPLPPPRL	11	Unmodified	_PLLPPLPPPRL_					0	0	0			REV__ENST00000371601.4_1_9:139940447-139940597:-|nuORF	REV__ENST00000371601.4_1_9:139940447-139940597:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.86944580078125	3	403.928781	1208.76451	-0.092026	-3.7172E-05	1.1006	0.00044454	1.0085	0.00040737	403.92914002080585	44.137	0.6853	44.221	44.02	44.706	0.083996					34	24	2	0	0	0	0.33287	1	9822	9822		2.8433	0.21205	1	225650	+		33069	20400	19246	19247	40399	40399					0.16848307121586004
PLLPPLPPPRL	11	Unmodified	_PLLPPLPPPRL_					0	0	0			REV__ENST00000371601.4_1_9:139940447-139940597:-|nuORF	REV__ENST00000371601.4_1_9:139940447-139940597:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	403.928781	1208.76451	0.090498	3.6555E-05	1.1602	0.00046865	1.2507	0.00050521	403.9293049520089	44.557	0.35291	44.557	44.357	44.71	0	0.16795	5.1547E-05	NaN	2.8433	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116370	+		33070	20400	19246	19247							0.16848307121586004
PLLPSFQLF	9	Unmodified	_PLLPSFQLF_					0	0	0		ENST00000216044.9_1_22:39128126-39128420:+|nuORF	ENST00000216044.9_1_22:39128126-39128420:+|nuORF	ENST00000216044.9_1_22:39128126-39128420:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3193969726562	2	531.305136	1060.59572	0.6893	0.00036623	0.32259	0.00017139	1.0119	0.00053762	531.3049542209161	84.422	0.87943	84.407	84.135	85.014	-0.015457					97	36	5	0	0	0	0.27532	2	22254	22254;22295		12.532	0	1	463870			33071	8811	19247	19248	40400;40401	40400					0.06784405488065204
PLLQNAFTF	9	Unmodified	_PLLQNAFTF_					0	0	0			REV__nc|ENSG00000077092|P10826-3|RARB	REV__nc|ENSG00000077092|P10826-3|RARB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3055419921875	2	525.784567	1049.55458	0.45628	0.0002399	0.27085	0.00014241	0.72712	0.00038231	525.7845957720581	53.826	1.1322	53.882	53.611	54.743	0.056255					69	42	2	0	0	0	0.1854	1	12865	12865		25.399	0	1	2993100	+		33072	13836	19248	19249	40402	40402					0.031786444485987886
PLLQSLLF	8	Unmodified	_PLLQSLLF_					0	0	0			REV__ENST00000544484.5_1_12:6679721-6679832:-|nuORF	REV__ENST00000544484.5_1_12:6679721-6679832:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7776794433594	2	465.786579	929.558604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.404	1	84.482	83.982	84.982	0.077095								0	0	0	0.37078	1	22118	22118		5.2307	0	1		+		33073	22156	19249	19250	40403	40403					0.09100733942341321
PLLQTLPK	8	Unmodified	_PLLQTLPK_					0	0	0			REV__ENSG00000069956|ENST00000261845|MAPK6	REV__ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2922058105469	2	455.292028	908.569503	0.16338	7.4384E-05	-0.11544	-5.256E-05	0.047933	2.1824E-05	455.29197911674146	40.53	1.279	40.629	40.146	41.425	0.099407					133	46	6	0	0	0	0.42446	1	8578	8578		14.582	0	1	1097800	+		33074	13715	19250	19251	40404	40404					0.1115613631660608
PLLRERIIAMW	11	Unmodified	_PLLRERIIAMW_					0	0	0			REV__ENSG00000100441|ENST00000553935|KHNYN	REV__ENSG00000100441|ENST00000553935|KHNYN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2774353027344	3	466.607713	1396.80131	-0.076633	-3.5757E-05	1.075	0.00050161	0.99839	0.00046586	466.60816742108557	95.773	0.4038	95.85	95.69	96.093	0.077408					49	34	2	0	0	0	0.33326	1	25568	25568		1.4551	0	1	109600	+		33075	14199	19251	19252	40405	40405					0.11878235675862925
PLLRERIIAMW	11	Unmodified	_PLLRERIIAMW_					0	0	0			REV__ENSG00000100441|ENST00000553935|KHNYN	REV__ENSG00000100441|ENST00000553935|KHNYN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2773742675781	3	466.607713	1396.80131	-0.068218	-3.1831E-05	1.0409	0.0004857	0.97269	0.00045387	466.9425748387254	95.553	0.26387	95.631	95.47	95.734	0.077408					27	20	2	0	0	0	0.33277	1	25496	25496		3.0723	1.6171	1	92339	+		33076	14199	19251	19252	40406	40406					0.11878235675862925
PLLRERIIAMW	11	Unmodified	_PLLRERIIAMW_					0	0	0			REV__ENSG00000100441|ENST00000553935|KHNYN	REV__ENSG00000100441|ENST00000553935|KHNYN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2774963378906	3	466.607713	1396.80131	0.26682	0.0001245	0.82538	0.00038513	1.0922	0.00050963	466.60806694856933	95.487	0.50538	95.484	95.249	95.755	-0.0038147					74	51	2	0	0	0	0.33326	1	25569	25569		1.4551	0	1	138880	+		33077	14199	19251	19252	40407	40407					0.11878235675862925
PLLRERIIAMW	11	Unmodified	_PLLRERIIAMW_					0	0	0			REV__ENSG00000100441|ENST00000553935|KHNYN	REV__ENSG00000100441|ENST00000553935|KHNYN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	466.607713	1396.80131	-0.21988	-0.0001026	1.0351	0.00048297	0.81519	0.00038037	466.60819619403054	95.765	0.44245	95.765	95.517	95.959	0	-0.042833	-1.1686E-05	NaN	1.4551	77	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107500	+		33078	14199	19251	19252							0.11878235675862925
PLLRGGVL	8	Unmodified	_PLLRGGVL_					0	0	0		ENST00000457023.1_1_3:15247773-15262489:+|nuORF;ENST00000253693.6_1_3:15247773-15253636:+|nuORF;ENST00000418994.1_1_3:15247725-15252361:+|nuORF	ENST00000457023.1_1_3:15247773-15262489:+|nuORF	ENST00000457023.1_1_3:15247773-15262489:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.239501953125	2	412.771263	823.527973	0.054805	2.2622E-05	0.13057	5.3895E-05	0.18537	7.6516E-05	412.771213744717	48.938	0.46917	48.938	48.721	49.19	0					28	16	2	0	0	0	0.34046	1	11291	11291		14.582	0	1	333580			33079	10701	19252	19253	40408	40408					0.10915000347961268
PLLRKPWF	8	Unmodified	_PLLRKPWF_					0	0	0		nc|ENSG00000205238|Q495Y8-2|SPDYE2;ENSG00000205238|ENST00000691607|SPDYE2;ENSG00000173678|ENST00000507450|SPDYE2B	nc|ENSG00000205238|Q495Y8-2|SPDYE2	nc|ENSG00000205238|Q495Y8-2|SPDYE2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8135986328125	2	528.821287	1055.62802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.485	1	79.546	79.046	80.046	0.061417								0	0	0	0.35985	1	20603	20603		10.183	0	1				33080	6739	19253	19254	40409	40409					0.10243237681743267
PLLRLALL	8	Unmodified	_PLLRLALL_					0	0	0			REV__ENST00000562077.5_1_16:70380567-70380630:-|nuORF	REV__ENST00000562077.5_1_16:70380567-70380630:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.277587890625	2	454.818213	907.621873	0.53784	0.00024462	-0.12851	-5.8447E-05	0.40934	0.00018617	454.81821158948435	77.834	0.54462	77.89	77.679	78.223	0.055412					26	19	2	0	0	0	0.27422	1	20083	20083		40.449	0	1	169970	+		33081	22315	19254	19255	40410	40410					0.16436719450211967
PLLRLGVDL	9	Unmodified	_PLLRLGVDL_					0	0	0			REV__ENSG00000168754|ENST00000490605|FAM178B	REV__ENSG00000168754|ENST00000490605|FAM178B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.3057861328125	2	498.316035	994.617516	0.29331	0.00014616	-0.73224	-0.00036489	-0.43893	-0.00021872	498.3159930448242	60.339	0.874	60.339	59.977	60.851	0					114	31	5	0	0	0	0.21303	1	14851	14851		21.747	2.4897	1	3565400	+		33082	17476	19255	19256	40411	40411					0.11999210236660929
PLLRLLAL	8	Unmodified	_PLLRLLAL_					0	0	0			REV__ENST00000325333.9_1_19:56154335-56154581:+|nuORF	REV__ENST00000325333.9_1_19:56154335-56154581:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.8179626464844	2	454.818213	907.621873	-0.033769	-1.5359E-05	0.17206	7.8255E-05	0.13829	6.2896E-05	454.8181298710354	73.928	0.65408	73.928	73.632	74.286	0					42	21	3	0	0	0	0.10409	2	18893	18893;18942		59.795	0	1	822600	+		33083	19997	19256	19257	40412;40413	40412					0.16436719450211967
PLLRLLAL	8	Unmodified	_PLLRLLAL_					0	0	0			REV__ENST00000325333.9_1_19:56154335-56154581:+|nuORF	REV__ENST00000325333.9_1_19:56154335-56154581:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.818359375	2	454.818213	907.621873	0.089973	4.0922E-05	0.2484	0.00011298	0.33837	0.0001539	454.8181895829914	73.836	0.57494	73.889	73.632	74.207	0.052368					43	19	3	0	0	0	0.10409	3	18865	18865;18908;18964		59.795	0	1	840160	+		33084	19997	19256	19257	40414;40415;40416	40414					0.16436719450211967
PLLRLLAL	8	Unmodified	_PLLRLLAL_					0	0	0			REV__ENST00000325333.9_1_19:56154335-56154581:+|nuORF	REV__ENST00000325333.9_1_19:56154335-56154581:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	454.818213	907.621873	-0.033769	-1.5359E-05	0.17206	7.8255E-05	0.13829	6.2896E-05	454.8181298710354	73.928	0.65408	73.928	73.632	74.286	0	0.016315	6.3662E-05	NaN	59.795	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	822600	+		33085	19997	19256	19257							0.16436719450211967
PLLRLLAL	8	Unmodified	_PLLRLLAL_					0	0	0			REV__ENST00000325333.9_1_19:56154335-56154581:+|nuORF	REV__ENST00000325333.9_1_19:56154335-56154581:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	454.818213	907.621873	0.089973	4.0922E-05	0.2484	0.00011298	0.33837	0.0001539	454.8181895829914	73.836	0.57494	73.889	73.632	74.207	0.052368	-0.022866	0.00013311	NaN	59.795	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	840160	+		33086	19997	19256	19257							0.16436719450211967
PLLRPTVLS	9	Unmodified	_PLLRPTVLS_					0	0	0			REV__ENST00000467438.1_1_1:87597663-87598596:+|nuORF	REV__ENST00000467438.1_1_1:87597663-87598596:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3056945800781	2	498.316035	994.617516	0.00060805	3.03E-07	-0.22944	-0.00011433	-0.22883	-0.00011403	498.3160707243773	60.22	0.93295	60.315	59.961	60.894	0.095093					100	33	4	0	0	0	0.1669	1	14805	14805		28.487	1.6032	1	3723500	+		33087	21299	19257	19258	40417	40417					0.11999210236660929
PLLRRRWGPVR	11	Unmodified	_PLLRRRWGPVR_					0	0	0		ENST00000370272.8_1_1:93811711-93811888:+|nuORF	ENST00000370272.8_1_1:93811711-93811888:+|nuORF	ENST00000370272.8_1_1:93811711-93811888:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7996826171875	3	469.293228	1404.85786	0.17425	8.1775E-05	0.62719	0.00029434	0.80144	0.00037611	469.2935062936154	87.894	0.53151	87.983	87.627	88.158	0.089203					59	30	2	0	0	0	0.33326	1	23159	23159		1.4551	1.4551	1	327880			33088	9795	19258	19259	40418	40418					0.1716204434737847
PLLRVPLL	8	Unmodified	_PLLRVPLL_					0	0	0		ENST00000296597.9_1_5:60240975-60241137:+|nuORF	ENST00000296597.9_1_5:60240975-60241137:+|nuORF	ENST00000296597.9_1_5:60240975-60241137:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.8182678222656	2	460.818213	919.621873	0.1077	4.9628E-05	0.20106	9.2651E-05	0.30875	0.00014228	460.8182405634223	69.171	1.2267	69.243	68.854	70.081	0.071938					64	43	2	0	0	0	0.28861	1	17417	17417		32.117	0	1	1135000			33089	9190	19259	19260	40419	40419					0.15884719450230023
PLLRVPLL	8	Unmodified	_PLLRVPLL_					0	0	0		ENST00000296597.9_1_5:60240975-60241137:+|nuORF	ENST00000296597.9_1_5:60240975-60241137:+|nuORF	ENST00000296597.9_1_5:60240975-60241137:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.8182678222656	2	460.818213	919.621873	0.10179	4.6906E-05	0.23983	0.00011052	0.34162	0.00015742	460.8182548572144	69.279	1.1312	69.257	68.918	70.049	-0.022087					65	40	2	0	0	0	0.16192	1	17460	17460		49.669	0	1	1190700			33090	9190	19259	19260	40420	40420					0.15884719450230023
PLLSFDPAF	9	Unmodified	_PLLSFDPAF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2922668457031	2	503.765843	1005.51713	0.47549	0.00023953	-3.4789	-0.0017526	-3.0034	-0.001513	503.7654094055625	72.852	0.61002	72.822	72.516	73.126	-0.029305					30	21	2	0	0	0	0.24913	1	18541	18541		12.532	4.6214	1	70351			33091	2505	19260	19261	40421	40421					0.014595531829968422
PLLSHATLS	9	Unmodified	_PLLSHATLS_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.31378173828125	2	469.768917	937.523281	0.13667	6.4204E-05	-0.3039	-0.00014276	-0.16722	-7.8557E-05	469.7708410687307	65.583	1.1913	65.672	65.06	66.251	0.088882					89	43	3	0	0	0	0.24739	1	16245	16245		13.508	0	1	430700	+		33092	18289	19261	19262	40422	40422					0.052020714145328384
PLLSKSPKT	9	Unmodified	_PLLSKSPKT_					0	0	0			REV__ENSG00000136514|ENST00000259030|RTP4	REV__ENSG00000136514|ENST00000259030|RTP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80047607421875	2	485.800217	969.585882	0.50401	0.00024485	-0.1623	-7.8845E-05	0.34171	0.000166	485.80015455267	85.254	1.4019	85.241	84.385	85.787	-0.01284					89	54	2	0	0	0	0.26168	1	22530	22530		1.8442	0	1	290700	+		33093	15814	19262	19263	40423	40423					0.09987217482705546
PLLSLLKVA	9	Unmodified	_PLLSLLKVA_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.742431640625	2	477.323328	952.632104	0.26793	0.00012789	-0.42673	-0.00020369	-0.1588	-7.58E-05	477.3231457008148	66.53	0.34853	66.53	66.369	66.717	0					15	11	2	0	0	0	0.25202	1	16628	16628		6.7232	0	1	104980			33094	2132	19263	19264	40424	40424					0.15389282384808212
PLLTGDGHLS	10	Unmodified	_PLLTGDGHLS_					0	0	0		ENST00000226951.10_1_4:10669528-10686425:-|nuORF	ENST00000226951.10_1_4:10669528-10686425:-|nuORF	ENST00000226951.10_1_4:10669528-10686425:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.26995849609375	2	505.269281	1008.52401	0.019474	9.8395E-06	1.3979	0.00070633	1.4174	0.00071616	505.2698893776039	81.555	0.61001	81.624	81.382	81.992	0.068993					58	27	3	0	0	0	0.2593	1	21248	21248		25.399	1.3787	1	786210			33095	8848	19264	19265	40425	40425					0.02008866063579262
PLLTQEPI	8	Unmodified	_PLLTQEPI_					0	0	0			REV__nc|ENSG00000162594|Q5VWK5-7|IL23R	REV__nc|ENSG00000162594|Q5VWK5-7|IL23R	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.76593017578125	2	455.765843	909.517133	-0.17673	-8.0546E-05	0.2825	0.00012875	0.10577	4.8209E-05	455.76586699228017	65.087	0.83306	65.176	64.844	65.677	0.088882					70	30	3	0	0	0	0.23581	1	16281	16281		38.151	0	1	1196700	+		33096	16989	19265	19266	40426	40426					0.058755531829774554
PLLTSFISGF	10	Unmodified	_PLLTSFISGF_					0	0	0			REV__nc|ENSG00000136824|O95347-2|SMC2	REV__nc|ENSG00000136824|O95347-2|SMC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.83251953125	2	541.30005	1080.58555	0.50336	0.00027247	-1.0284	-0.00055667	-0.52503	-0.0002842	541.2996261155482	69.457	1.1431	69.523	68.824	69.967	0.06604					61	40	2	0	0	0	0.27042	1	17338	17338		28.487	14.979	1	230030	+		33097	15828	19266	19267	40427	40427					0.04847797762840855
PLLTSFISGF	10	Unmodified	_PLLTSFISGF_					0	0	0			REV__nc|ENSG00000136824|O95347-2|SMC2	REV__nc|ENSG00000136824|O95347-2|SMC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8323364257812	2	541.30005	1080.58555	0.49163	0.00026612	-0.79657	-0.00043119	-0.30495	-0.00016507	541.2996570091065	69.206	1.1778	69.186	68.815	69.993	-0.02092					67	42	2	0	0	0	0.27042	1	17363	17363		28.487	14.979	1	194830	+		33098	15828	19266	19267	40428	40428					0.04847797762840855
PLLTTLDEKI	10	Unmodified	_PLLTTLDEKI_					0	0	0			REV__ENSG00000253117|ENST00000254627|OC90	REV__ENSG00000253117|ENST00000254627|OC90	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2799072265625	2	571.836997	1141.65944	0.096058	5.4929E-05	0.35572	0.00020341	0.45178	0.00025834	572.3399022535839	42.664	0.60011	42.755	42.385	42.985	0.091358					51	21	4	0	0	0	0.29589	1	9276	9276		22.736	7.4878	1	501210	+		33099	19224	19267	19268	40429	40429					0.09427721134511557
PLLTVLIL	8	Unmodified	_PLLTVLIL_					0	0	0		nc|ENSG00000023171|Q3KR37-3|GRAMD1B	nc|ENSG00000023171|Q3KR37-3|GRAMD1B	nc|ENSG00000023171|Q3KR37-3|GRAMD1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.3071594238281	2	441.307147	880.599741	0.014845	6.551E-06	-0.0081235	-3.585E-06	0.006721	2.966E-06	441.3070149612564	94.062	0.85984	94.062	93.725	94.584	0					147	69	3	0	0	0	0.20019	1	25073	25073		42.968	0	1	414960			33100	12567	19268	19269	40430	40430					0.1546649498179704
PLLVGVELQRA	11	Unmodified	_PLLVGVELQRA_					0	0	0		ENST00000484651.5_1_4:1725148-1739714:+|nuORF	ENST00000484651.5_1_4:1725148-1739714:+|nuORF	ENST00000484651.5_1_4:1725148-1739714:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.287109375	2	597.86388	1193.71321	0.49371	0.00029517	0.51597	0.00030848	1.0097	0.00060365	597.864144003181	57.056	0.90652	57.037	56.646	57.553	-0.019081					99	32	4	0	0	0	0.33046	1	13893	13893		6.7232	0.99131	1	2296400			33101	11077	19269	19270	40431	40431					0.12409938356881867
PLLVTQYV	8	Unmodified	_PLLVTQYV_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.30108642578125	2	466.776211	931.537869	0.22207	0.00010365	-0.44709	-0.00020869	-0.22502	-0.00010504	466.77610309583696	83.642	0.41099	83.719	83.462	83.873	0.077095					23	16	2	0	0	0	0.34039	1	21827	21827		15.847	11.518	1	130520	+		33102	17741	19270	19271	40432	40432					0.06936143562666075
PLLVVQTL	8	Unmodified	_PLLVVQTL_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.6924133300781	2	441.786579	881.558604	0.23842	0.00010533	0.22226	9.819E-05	0.46067	0.00020352	441.7866892487621	71.836	0.55159	71.836	71.664	72.215	0					31	19	2	0	0	0	0.33995	1	18383	18383		5.7604	2.8712	1	176650			33103	5477	19271	19272	40433	40433					0.11308733942325944
PLLVVQTL	8	Unmodified	_PLLVVQTL_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.6925048828125	2	441.786579	881.558604	0.28101	0.00012414	0.47197	0.00020851	0.75297	0.00033265	441.7867718816172	71.875	0.59661	71.847	71.685	72.282	-0.027275					31	21	2	0	0	0	0.33995	1	18380	18380		10.183	3.8293	1	193180			33104	5477	19271	19272	40434	40434					0.11308733942325944
PLLVVQTL	8	Unmodified	_PLLVVQTL_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	441.786579	881.558604	0.18202	8.0415E-05	0.53125	0.0002347	0.71328	0.00031512	441.7867865488605	71.833	0.57026	71.889	71.654	72.224	0.056572	0.031618	0.00013139	NaN	5.7604	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183650			33105	5477	19271	19272							0.11308733942325944
PLLVWVSGL	9	Unmodified	_PLLVWVSGL_					0	0	0			REV__ENST00000567020.6_2_16:2551236-2551404:+|nuORF	REV__ENST00000567020.6_2_16:2551236-2551404:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.3021240234375	2	492.299853	982.585153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.967	1	47.967	47.467	48.467	0								0	0	0	0.24522	1	10937	10937		7.9102	0.62092	1		+		33106	22375	19272	19273	40435	40435					0.09316422833660454
PLLWSCRTT	9	Unmodified	_PLLWSCRTT_					0	0	0			REV__ENST00000457668.1_1_2:60579119-60579293:-|nuORF	REV__ENST00000457668.1_1_2:60579119-60579293:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7821655273438	2	538.781502	1075.54845	0.72705	0.00039172	0.74767	0.00040283	1.4747	0.00079455	538.7823346392037	84.502	0.56893	84.489	84.267	84.836	-0.01284					35	22	2	0	0	0	0.24581	1	22166	22166		16.942	1.0951	1	190890	+		33107	21183	19273	19274	40436	40436					0.013698029454189964
PLLYKAKNR	9	Unmodified	_PLLYKAKNR_					0	0	0			REV__L1PB2_dup662|chr4:69045538-69047075:-|8.226746573817685|0.3974588987332585|4.37|541.0|18|2|sense	REV__L1PB2_dup662|chr4:69045538-69047075:-|8.226746573817685|0.3974588987332585|4.37|541.0|18|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8528442382812	2	551.840208	1101.66586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.468	1	51.478	50.978	51.978	0.0095634								0	0	0	0.20953	1	12004	12004		19.439	4.8573	1		+		33108	22830	19274	19275	40437	40437					0.11909703876540334
PLLYLFYIS	9	Unmodified	_PLLYLFYIS_					0	0	0			REV__ENSG00000180251|ENST00000295269|SLC9A4	REV__ENSG00000180251|ENST00000295269|SLC9A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.8211669921875	2	564.820618	1127.62668	0.67155	0.0003793	0.30006	0.00016948	0.97161	0.00054879	564.8205736921857	78.542	2.3639	78.512	77.155	79.519	-0.030434					194	91	3	0	0	0	0.28128	1	20253	20253		11.64	3.7301	1	543010	+		33109	18105	19275	19276	40438	40438					0.0679755880232733
PLLYLRSKF	9	Unmodified	_PLLYLRSKF_					0	0	0		ENST00000368886.9_1_10:124766548-124766650:-|nuORF	ENST00000368886.9_1_10:124766548-124766650:-|nuORF	ENST00000368886.9_1_10:124766548-124766650:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2747192382812	2	568.844959	1135.67537	0.37948	0.00021587	1.124	0.00063937	1.5035	0.00085524	568.8456973094391	71.574	0.59661	71.631	71.487	72.084	0.056572					26	21	2	0	0	0	0.24739	1	18317	18317		8.5933	0	1	232300			33110	9772	19276	19277	40439	40439					0.11295472162055376
PLLYLRSKF	9	Unmodified	_PLLYLRSKF_					0	0	0		ENST00000368886.9_1_10:124766548-124766650:-|nuORF	ENST00000368886.9_1_10:124766548-124766650:-|nuORF	ENST00000368886.9_1_10:124766548-124766650:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	568.844959	1135.67537	0.3473	0.00019756	1.4669	0.00083446	1.8142	0.001032	568.8459365485623	71.755	0.47443	71.727	71.506	71.981	-0.027275	0.048448	0.00028239	NaN	8.5933	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157430			33111	9772	19276	19277							0.11295472162055376
PLMAFPEIGF	10	Unmodified	_PLMAFPEIGF_					0	0	0		HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|186|1|anti-sense	HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|186|1|anti-sense	HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|186|1|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3032836914062	2	561.288628	1120.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.437	1	65.425	64.925	65.925	-0.011337								0	0	0	0.34755	1	16313	16313		15.847	1.0089	1				33112	12420	19277	19278	40440	40440					0.007244553737336901
PLMDLLLL	8	Unmodified	_PLMDLLLL_					0	0	0		ENST00000588191.5_3_18:11897253-11897313:-|nuORF	ENST00000588191.5_3_18:11897253-11897313:-|nuORF	ENST00000588191.5_3_18:11897253-11897313:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.275634765625	2	464.282815	926.551076	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.637	1	18.637	18.137	19.137	0								0	0	0	0.36169	1	1992	1992		9.3474	0	1				33113	12141	19278	19279	40441	40441					0.08486258350421849
PLMEEDLD	8	Unmodified	_PLMEEDLD_					0	0	0		ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2896728515625	2	481.212783	960.411013	0.36437	0.00017534	2.4934	0.0011998	2.8578	0.0013752	481.21379761915307	51.348	0.40017	51.348	51.03	51.43	0					18	14	2	0	0	0	0.34185	1	11936	11936		2.5775	0	1	140020			33114	2101	19279	19280	40442	40442					-0.0707757044463051
PLMHTCQLF	9	Unmodified	_PLMHTCQLF_					0	0	0			REV__nc|ENSG00000183569|Q9H4I8-3|SERHL2	REV__nc|ENSG00000183569|Q9H4I8-3|SERHL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.31689453125	2	545.26463	1088.51471	0.66364	0.00036186	3.3907	0.0018488	4.0543	0.0022107	545.7673344377858	87.742	0.091888	87.83	87.765	87.857	0.087997					7	5	2	0	0	0	0.2451	1	23124	23124		15.847	2.3393	1	94764	+		33115	18269	19280	19281	40443	40443					-0.026009418179910426
PLMIREQR	8	Unmodified	_PLMIREQR_					0	0	0		nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF	nc|ENSG00000103472|A6NIE6|RRN3P2	nc|ENSG00000103472|A6NIE6|RRN3P2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.7947387695312	2	521.794943	1041.57533	0.36886	0.00019247	-0.34421	-0.00017961	0.024651	1.2863E-05	521.7949030179683	17.797	0.5934	17.797	17.507	18.1	0					35	19	2	0	0	0	0.46461	1	1752	1752		0.79363	0	1	61283			33116	11950	19281	19282	40444	40444					0.0562091155663893
PLMNRAML	8	Unmodified	_PLMNRAML_					0	0	0			REV__ENSG00000203989|ENST00000371402|RHOXF2B	REV__ENSG00000203989|ENST00000371402|RHOXF2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7999572753906	2	473.254065	944.493578	0.01224	5.7929E-06	-0.31278	-0.00014802	-0.30054	-0.00014223	473.2538491927964	17.424	0.24459	17.307	17.111	17.355	-0.11739					11	8	2	0	0	0	0.3439	1	1606	1606		2.8892	0	1	35063	+		33117	15529	19282	19283	40445	40445					0.01911092873160669
PLMYKRLLNV	10	Unmodified	_PLMYKRLLNV_					0	0	0			REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.8704223632812	2	623.870651	1245.72675	-0.056943	-3.5525E-05	0.49135	0.00030654	0.43441	0.00027101	623.8706790197298	95.631	0.42745	95.709	95.535	95.962	0.077408					67	34	3	0	0	0	0.41085	2	25526	25526;25532		1.4819	0.28856	1	148460	+		33118	16912	19283	19284	40446;40447	40446					0.11371472864493626
PLMYKRLLNV	10	Unmodified	_PLMYKRLLNV_					0	0	0			REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.8707275390625	2	623.870651	1245.72675	0.24472	0.00015268	0.43067	0.00026868	0.6754	0.00042136	623.8705861664656	95.736	0.57146	95.732	95.519	96.091	-0.0038223					84	51	2	0	0	0	0.41085	1	25619	25619		1.4819	0	1	188630	+		33119	16912	19283	19284	40448	40448					0.11371472864493626
PLNHGDLTL	9	Unmodified	_PLNHGDLTL_					0	0	0			REV__nc|ENSG00000033011|Q9BT22-2|ALG1	REV__nc|ENSG00000033011|Q9BT22-2|ALG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2573547363281	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.614	1	81.614	81.114	82.114	0								0	0	0	0.12743	1	21268	21268		39.957	1.8061	1		+		33120	13498	19284	19285	40449	40449					0.023328834091330464
PLNHGDLTL	9	Unmodified	_PLNHGDLTL_					0	0	0			REV__nc|ENSG00000033011|Q9BT22-2|ALG1	REV__nc|ENSG00000033011|Q9BT22-2|ALG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2572937011719	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.532	1	81.601	81.101	82.101	0.068993								0	0	0	0.11063	1	21234	21234		43.858	1.7637	1		+		33121	13498	19284	19285	40450	40450					0.023328834091330464
PLNISDWR	8	Unmodified	_PLNISDWR_					0	0	0		ENST00000520220.6_2_8:56924052-56924115:+|nuORF	ENST00000520220.6_2_8:56924052-56924115:+|nuORF	ENST00000520220.6_2_8:56924052-56924115:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8187561035156	2	500.764166	999.513779	0.29407	0.00014726	-0.22762	-0.00011398	0.066452	3.3277E-05	500.76401644548645	42.856	0.37661	42.941	42.731	43.107	0.085197					23	13	2	0	0	0	0.34131	1	9359	9359		7.9102	0	1	151230			33122	11470	19285	19286	40451	40451					0.01400303128991709
PLNKVTPF	8	Unmodified	_PLNKVTPF_					0	0	0			REV__ENST00000268182.9_1_15:91019895-91019952:+|nuORF	REV__ENST00000268182.9_1_15:91019895-91019952:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7403259277344	2	458.268553	914.522553	0.34309	0.00015723	-3.6081	-0.0016535	-3.265	-0.0014963	458.2673358816743	45.646	0.10552	45.711	45.647	45.753	0.065052					6	3	2	0	0	0	0.34218	1	10208	10208		9.3474	1.4373	1	66262	+		33123	19662	19286	19287	40452	40452					0.06187276765467686
PLNLPPAALS	10	Unmodified	_PLNLPPAALS_					0	0	0			REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.77410888671875	2	496.792392	991.570232	0.45204	0.00022457	-1.0016	-0.00049757	-0.54952	-0.000273	496.79168920558817	53.298	0.82618	53.354	53.043	53.869	0.056255					54	30	2	0	0	0	0.31358	1	12645	12645		13.906	3.0821	1	346110	+		33124	15313	19287	19288	40453	40453					0.07410930965670559
PLNPLPLTK	9	Unmodified	_PLNPLPLTK_					0	0	0			REV__ENSG00000163512|ENST00000479665|AZI2	REV__ENSG00000163512|ENST00000479665|AZI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.8217468261719	2	496.810585	991.606617	0.51072	0.00025373	0.17565	8.7266E-05	0.68638	0.000341	496.8106258367379	35.998	0.42363	35.998	35.745	36.168	0					23	15	2	0	0	0	0.25989	1	7297	7297		14.838	2.3067	1	215450	+		33125	17060	19288	19289	40454	40454					0.11047807862371428
PLNPLPLTK	9	Unmodified	_PLNPLPLTK_					0	0	0			REV__ENSG00000163512|ENST00000479665|AZI2	REV__ENSG00000163512|ENST00000479665|AZI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.8216857910156	2	496.810585	991.606617	0.50753	0.00025215	-0.011099	-5.5143E-06	0.49644	0.00024663	496.8106125861041	35.906	0.43336	35.988	35.71	36.143	0.082359					23	15	2	0	0	0	0.26612	1	7261	7261		13.906	1.3745	1	195830	+		33126	17060	19288	19289	40455	40455					0.11047807862371428
PLNPLPLTK	9	Unmodified	_PLNPLPLTK_					0	0	0			REV__ENSG00000163512|ENST00000479665|AZI2	REV__ENSG00000163512|ENST00000479665|AZI2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	496.810585	991.606617	0.51072	0.00025373	0.17565	8.7266E-05	0.68638	0.000341	496.8106258367379	35.998	0.42363	35.998	35.745	36.168	0	0.0060487	0.00012878	NaN	14.838	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215450	+		33127	17060	19288	19289							0.11047807862371428
PLNPLPLTK	9	Unmodified	_PLNPLPLTK_					0	0	0			REV__ENSG00000163512|ENST00000479665|AZI2	REV__ENSG00000163512|ENST00000479665|AZI2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	496.810585	991.606617	0.50753	0.00025215	-0.011099	-5.5143E-06	0.49644	0.00024663	496.8106125861041	35.906	0.43336	35.988	35.71	36.143	0.082359	-0.0033749	-5.6783E-05	NaN	14.838	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195830	+		33128	17060	19288	19289							0.11047807862371428
PLNRAKLTI	9	Unmodified	_PLNRAKLTI_					0	0	0			REV__ENSG00000076356|ENST00000367033|PLXNA2	REV__ENSG00000076356|ENST00000367033|PLXNA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.8112182617188	2	513.326934	1024.63931	0.12947	6.6459E-05	0.060133	3.0868E-05	0.1896	9.7327E-05	513.326859571568	31.016	0.45756	31.043	30.893	31.351	0.027157					37	16	3	0	0	0	0.25066	1	5760	5760		11.64	0	1	356940	+		33129	13828	19289	19290	40456	40456					0.12798014985219197
PLNRGPLAA	9	Unmodified	_PLNRGPLAA_					0	0	0			REV__ENST00000431515.6_2_16:3029815-3030326:-|nuORF	REV__ENST00000431515.6_2_16:3029815-3030326:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.28375244140625	2	454.769252	907.52395	0.2815	0.00012802	-0.92051	-0.00041862	-0.63901	-0.0002906	454.7688464812355	87.099	0.63986	87.093	86.82	87.46	-0.0056229					37	27	3	0	0	0	0.24913	1	22974	22974		12.532	3.1841	1	317150	+		33130	20952	19290	19291	40457	40457					0.06648910854232781
PLNSPCIIT	9	Unmodified	_PLNSPCIIT_					0	0	0			REV__ENST00000573130.2_1_16:3104061-3104997:-|nuORF	REV__ENST00000573130.2_1_16:3104061-3104997:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2847900390625	2	479.257328	956.500103	-0.048356	-2.3175E-05	-2.1913	-0.0010502	-2.2397	-0.0010734	479.2564549478447	95.686	0.36626	95.686	95.54	95.906	0					83	36	3	0	0	0	0.24913	1	25548	25548		12.532	0	1	82861	+		33131	22424	19291	19292	40458	40458					0.020113093055329045
PLPAERPIF	9	Unmodified	_PLPAERPIF_					0	0	0		ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3472900390625	2	520.300384	1038.58622	0.45064	0.00023447	0.20909	0.00010879	0.65972	0.00034325	520.3005843001829	71.124	1.3152	71.124	70.484	71.799	0					64	46	2	0	0	0	0.22596	1	18244	18244		21.747	2.3076	1	345620			33132	2101	19292	19293	40459	40459					0.06846637202556849
PLPAERPIF	9	Unmodified	_PLPAERPIF_					0	0	0		ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	ENSG00000106789|ENST00000375077|CORO2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3472900390625	2	520.300384	1038.58622	0.45841	0.00023851	-0.023687	-1.2324E-05	0.43472	0.00022618	520.300291876296	72.64	1.1971	72.694	71.975	73.172	0.053833					61	43	2	0	0	0	0.2451	1	18405	18405		10.824	0	1	175880			33133	2101	19292	19293	40460	40460					0.06846637202556849
PLPASLIQK	9	Unmodified	_PLPASLIQK_					0	0	0			REV__ENST00000557589.1_1_12:56817199-56818568:-|nuORF	REV__ENST00000557589.1_1_12:56817199-56818568:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.802734375	2	483.80276	965.590967	0.036995	1.7898E-05	-1.2608	-0.00060998	-1.2238	-0.00059208	483.80286366420125	64.988	1.2033	64.988	64.591	65.795	0					136	43	4	0	0	0	0.23767	1	16215	16215		18.146	1.0335	1	2305400	+		33134	14726	19293	19294	40461	40461					0.10679521345343801
PLPASLIQK	9	Unmodified	_PLPASLIQK_					0	0	0			REV__ENST00000557589.1_1_12:56817199-56818568:-|nuORF	REV__ENST00000557589.1_1_12:56817199-56818568:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.302490234375	2	483.80276	965.590967	0.13748	6.6511E-05	-1.4673	-0.00070989	-1.3298	-0.00064338	483.8028147785775	64.865	1.0782	64.957	64.553	65.631	0.091934					119	39	4	0	0	0	0.18803	2	16134	16134;16213		25.399	3.6527	1	2200100	+		33135	14726	19293	19294	40462;40463	40462					0.10679521345343801
PLPASLIQK	9	Unmodified	_PLPASLIQK_					0	0	0			REV__ENST00000557589.1_1_12:56817199-56818568:-|nuORF	REV__ENST00000557589.1_1_12:56817199-56818568:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.30255126953125	2	483.80276	965.590967	0.052608	2.5452E-05	-1.3027	-0.00063027	-1.2501	-0.00060482	483.80284938448915	64.982	1.2484	64.971	64.578	65.827	-0.01133					121	45	4	0	0	0	0.19747	2	16163	16163;16205		24.021	2.2739	1	2069500	+		33136	14726	19293	19294	40464;40465	40464					0.10679521345343801
PLPASLIQK	9	Unmodified	_PLPASLIQK_					0	0	0			REV__ENST00000557589.1_1_12:56817199-56818568:-|nuORF	REV__ENST00000557589.1_1_12:56817199-56818568:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.8028259277344	2	483.80276	965.590967	0.052608	2.5452E-05	-1.3027	-0.00063027	-1.2501	-0.00060482	483.80284938448915	64.982	1.2484	64.971	64.578	65.827	-0.01133					121	45	4	0	0	0	0.1939	1	16205	16205		18.146	7.3224	1	2069500	+		33137	14726	19293	19294	40466	40466					0.10679521345343801
PLPATTVLGR	10	Unmodified	_PLPATTVLGR_					0	0	0			REV__ENSG00000101203|ENST00000358894|COL20A1	REV__ENSG00000101203|ENST00000358894|COL20A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2830810546875	2	512.811116	1023.60768	0.071085	3.6453E-05	0.64008	0.00032824	0.71116	0.00036469	512.8111489614814	18.853	0.38668	18.736	18.531	18.918	-0.11739					24	13	2	0	0	0	0.32123	1	2091	2091		1.6526	0.96225	1	49447	+		33138	14256	19294	19295	40467	40467					0.09682022231288556
PLPCPDVECEF	11	Unmodified	_PLPCPDVECEF_					0	0	0		nc|ENSG00000184613|Q99435-4|NELL2;ENSG00000184613|ENST00000429094|NELL2;nc|ENSG00000184613|Q99435-2|NELL2;nc|ENSG00000184613|Q99435-3|NELL2	nc|ENSG00000184613|Q99435-4|NELL2	nc|ENSG00000184613|Q99435-4|NELL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.7677001953125	2	624.7674	1247.52025	0.55483	0.00034664	-0.74287	-0.00046412	-0.18804	-0.00011748	624.7670737325562	74.322	1.0801	74.322	74.098	75.178	0					95	37	4	0	0	0	0.41896	1	19113	19113		8.7454	0.58988	1	1824800			33139	7465	19295	19296	40468	40468					-0.09361307816834596
PLPDLSPPLF	10	Unmodified	_PLPDLSPPLF_					0	0	0			REV__nc|ENSG00000165458|O15357-2|INPPL1	REV__nc|ENSG00000165458|O15357-2|INPPL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.30810546875	2	548.307875	1094.6012	0.89036	0.00048819	-0.38904	-0.00021331	0.50132	0.00027488	548.3076074711063	60.804	0.45174	60.795	60.516	60.968	-0.0094566					47	16	4	0	0	0	0.12727	1	14891	14891		42.095	2.1372	1	1626500	+		33140	17237	19296	19297	40469	40469					0.05768084279884533
PLPDLSPPLF	10	Unmodified	_PLPDLSPPLF_					0	0	0			REV__nc|ENSG00000165458|O15357-2|INPPL1	REV__nc|ENSG00000165458|O15357-2|INPPL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.307875	1094.6012	0.85316	0.00046779	-0.46226	-0.00025346	0.3909	0.00021433	548.3075950476543	60.657	0.66281	60.754	60.477	61.14	0.096985	-0.035278	-9.1102E-05	NaN	42.095	52	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1737500	+		33141	17237	19296	19297							0.05768084279884533
PLPDLSPPLF	10	Unmodified	_PLPDLSPPLF_					0	0	0			REV__nc|ENSG00000165458|O15357-2|INPPL1	REV__nc|ENSG00000165458|O15357-2|INPPL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	548.307875	1094.6012	0.89036	0.00048819	-0.38904	-0.00021331	0.50132	0.00027488	548.3076074711063	60.804	0.45174	60.795	60.516	60.968	-0.0094566	0.0050341	-1.0802E-05	NaN	42.095	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1626500	+		33142	17237	19296	19297							0.05768084279884533
PLPEGLPPTL	10	Unmodified	_PLPEGLPPTL_					0	0	0		REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant;REPS2|p.D555Gfs*14|1|0.67|ENSG00000169891|chrX:17133904-17133905|-/A|frameshift_variant;nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7614135742188	2	517.30005	1032.58555	0.39913	0.00020647	-1.3717	-0.00070961	-0.97262	-0.00050314	517.3002934981222	62.258	0.20624	62.258	62.162	62.369	0					10	7	2	0	0	0	0.28434	1	15331	15331		13.906	3.8321	1	86174			33143	6396	19297	19298	40470	40470					0.07055797762859584
PLPEGLPPTL	10	Unmodified	_PLPEGLPPTL_					0	0	0		REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant;REPS2|p.D555Gfs*14|1|0.67|ENSG00000169891|chrX:17133904-17133905|-/A|frameshift_variant;nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7612915039062	2	517.30005	1032.58555	-0.057158	-2.9568E-05	1.9475	0.0010074	1.8903	0.00097785	517.3006047288894	61.648	0.89392	61.639	61.297	62.191	-0.0085526					81	32	4	0	0	0	0.28434	1	15234	15234		13.906	0	1	1325200			33144	6396	19297	19298	40471	40471					0.07055797762859584
PLPELEIF	8	Unmodified	_PLPELEIF_					0	0	0		ENST00000599581.5_1_19:52786637-52794448:+|nuORF;ENSG00000196214|ENST00000439461|ZNF766	ENST00000599581.5_1_19:52786637-52794448:+|nuORF	ENST00000599581.5_1_19:52786637-52794448:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2772216796875	2	479.268219	956.521884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.281	1	72.254	71.754	72.754	-0.027275								0	0	0	0.34752	1	18404	18404		15.768	0	1				33145	7837	19298	19299	40472	40472					0.041884373257630614
PLPESRLWA	9	Unmodified	_PLPESRLWA_					0	0	0			REV__ENSG00000177943|ENST00000317446|MAMDC4	REV__ENSG00000177943|ENST00000317446|MAMDC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2935791015625	2	534.795466	1067.57638	0.31308	0.00016743	-2.5317	-0.001354	-2.2186	-0.0011865	534.7963674990565	79.87	0.64203	79.931	79.8	80.442	0.061417					30	23	2	0	0	0	0.24311	1	20711	20711		16.942	2.3606	1	88487	+		33146	18008	19299	19300	40473	40473					0.045294491971844764
PLPESVPVF	9	Unmodified	_PLPESVPVF_					0	0	0		ENSG00000198837|ENST00000361217|DENND4B	ENSG00000198837|ENST00000361217|DENND4B	ENSG00000198837|ENST00000361217|DENND4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.77398681640625	2	492.773668	983.532783	0.45451	0.00022397	0.47973	0.0002364	0.93424	0.00046037	492.77384400173395	72.845	0.9911	72.845	72.506	73.497	0					86	35	3	0	0	0	0.19839	1	18612	18612		28.487	6.7402	1	556770			33147	8138	19300	19301	40474	40474					0.040358397000545665
PLPESVPVF	9	Unmodified	_PLPESVPVF_					0	0	0		ENSG00000198837|ENST00000361217|DENND4B	ENSG00000198837|ENST00000361217|DENND4B	ENSG00000198837|ENST00000361217|DENND4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.7739562988281	2	492.773668	983.532783	0.38998	0.00019217	0.50376	0.00024824	0.89374	0.00044041	492.7738436100783	72.826	1.1497	72.88	72.484	73.633	0.053833					90	41	3	0	0	0	0.17787	1	18584	18584		26.884	5.137	1	544100			33148	8138	19300	19301	40475	40475					0.040358397000545665
PLPESVPVF	9	Unmodified	_PLPESVPVF_					0	0	0		ENSG00000198837|ENST00000361217|DENND4B	ENSG00000198837|ENST00000361217|DENND4B	ENSG00000198837|ENST00000361217|DENND4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.77392578125	2	492.773668	983.532783	0.48373	0.00023837	0.4546	0.00022402	0.93833	0.00046238	492.7737403354078	72.853	0.96162	72.824	72.542	73.503	-0.029297					81	34	3	0	0	0	0.1854	1	18611	18611		32.305	10.559	1	478730			33149	8138	19300	19301	40476	40476					0.040358397000545665
PLPGAAPSVVL	11	Unmodified	_PLPGAAPSVVL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.7774658203125	2	510.808042	1019.60153	0.76554	0.00039105	-1.1246	-0.00057443	-0.35901	-0.00018339	510.8077475884112	50.652	0.31992	50.673	50.578	50.898	0.020691					17	11	2	0	0	0	0.32293	1	11777	11777		13.042	0	1	202310			33150	5528	19301	19302	40477	40477					0.09251503999769284
PLPGAVAPRT	10	Unmodified	_PLPGAVAPRT_					0	0	0			REV__ENST00000257860.8_1_12:49692132-49692414:+|nuORF	REV__ENST00000257860.8_1_12:49692132-49692414:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.318359375	2	489.790184	977.565815	0.57348	0.00028088	-0.22941	-0.00011236	0.34407	0.00016852	489.7900070750448	20.591	0.48334	20.481	20.296	20.779	-0.11003					24	16	2	0	0	0	0.3198	1	2660	2660		4.3292	0.73274	1	117910	+		33151	19562	19302	19303	40478	40478					0.07613466542750302
PLPGAVAPRT	10	Unmodified	_PLPGAVAPRT_					0	0	0			REV__ENST00000257860.8_1_12:49692132-49692414:+|nuORF	REV__ENST00000257860.8_1_12:49692132-49692414:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	489.790184	977.565815	0.62894	0.00030805	-0.30732	-0.00015052	0.32162	0.00015753	489.789824612302	20.436	0.36318	20.383	20.275	20.638	-0.05291	-0.033364	-0.00010202	NaN	4.3292	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97385	+		33152	19562	19302	19303							0.07613466542750302
PLPGLNQMLI	10	Unmodified	_PLPGLNQMLI_					0	0	0			REV__nc|ENSG00000143452|Q86X24-4|HORMAD1	REV__nc|ENSG00000143452|Q86X24-4|HORMAD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7977905273438	2	548.315177	1094.6158	0.48065	0.00026355	0.4912	0.00026933	0.97185	0.00053288	548.315487563794	66.411	0.64799	66.397	66.091	66.739	-0.013596					41	23	2	0	0	0	0.31051	1	16523	16523		7.2892	2.96	1	406380	+		33153	16181	19303	19304	40479	40479					0.07227833156389352
PLPGPSHH	8	Unmodified	_PLPGPSHH_					0	0	0		ENST00000526177.5_1_11:75155472-75160957:-|nuORF;ENST00000527322.5_1_11:75155472-75168807:-|nuORF	ENST00000526177.5_1_11:75155472-75160957:-|nuORF	ENST00000526177.5_1_11:75155472-75160957:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2613220214844	2	421.219395	840.424236	-0.10963	-4.6178E-05	2.0904	0.0008805	1.9807	0.00083432	421.21956225414567	76.573	0.79965	76.626	76.482	77.282	0.053413					44	28	3	0	0	0	0.34147	1	19877	19877		11.114	0	1	158970			33154	11550	19304	19305	40480	40480					-0.0023590675972400277
PLPISSATF	9	Unmodified	_PLPISSATF_					0	0	0			REV__ENST00000301454.8_1_19:6440495-6440663:-|nuORF	REV__ENST00000301454.8_1_19:6440495-6440663:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2571716308594	2	466.758018	931.501483	0.10857	5.0674E-05	-0.11168	-5.2128E-05	-0.003115	-1.4539E-06	466.7583510814651	79.414	3.9147	79.414	78.195	82.11	0					344	160	5	0	0	0	0.22883	3	20349	20349;20397;20445		19.439	5.9311	1	24549000	+		33155	19823	19305	19306	40481;40482;40483	40481					0.03299266665953837
PLPLALLL	8	Unmodified	_PLPLALLL_					0	0	0			REV__nc|ENSG00000283706|Q9UI38|PRSS50	REV__nc|ENSG00000283706|Q9UI38|PRSS50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.2944030761719	2	425.29404	848.573526	-0.33682	-0.00014325	0.29424	0.00012514	-0.042578	-1.8108E-05	425.29438247525235	96.693	1.8874	96.693	96.228	98.115	0					566	190	5	0	0	0	0.027502	6	25836	25799;25836;25872;25910;25943;25976		91.927	0	1	11314000	+		33156	23238	19306	19307	40484;40485;40486;40487;40488;40489	40485					0.1431822581033657
PLPLALLL	8	Unmodified	_PLPLALLL_					0	0	0			REV__nc|ENSG00000283706|Q9UI38|PRSS50	REV__nc|ENSG00000283706|Q9UI38|PRSS50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.2941589355469	2	425.29404	848.573526	-0.23722	-0.00010089	0.19975	8.4954E-05	-0.037466	-1.5934E-05	425.29430710320406	96.592	2.0395	96.663	96.159	98.199	0.070457					592	217	4	0	0	0	0.015002	4	25801	25766;25801;25838;25877		108.76	0	1	13233000	+		33157	23238	19306	19307	40490;40491;40492;40493	40491					0.1431822581033657
PLPLALLL	8	Unmodified	_PLPLALLL_					0	0	0			REV__nc|ENSG00000283706|Q9UI38|PRSS50	REV__nc|ENSG00000283706|Q9UI38|PRSS50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.29425048828125	2	425.29404	848.573526	-0.010629	-4.5204E-06	0.023864	1.0149E-05	0.013235	5.6287E-06	425.2941729758154	96.707	1.9426	96.701	96.206	98.149	-0.0055466					562	200	5	0	0	0	0.015002	6	25865	25795;25829;25865;25900;25935;25973		108.76	0	1	13078000	+		33158	23238	19306	19307	40494;40495;40496;40497;40498;40499	40496					0.1431822581033657
PLPLALLL	8	Unmodified	_PLPLALLL_					0	0	0			REV__nc|ENSG00000283706|Q9UI38|PRSS50	REV__nc|ENSG00000283706|Q9UI38|PRSS50	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	425.29404	848.573526	-0.33682	-0.00014325	0.29424	0.00012514	-0.042578	-1.8108E-05	425.29438247525235	96.693	1.8874	96.693	96.228	98.115	0	0.0076641	0.00013969	NaN	108.76	566	190	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11314000	+		33159	23238	19306	19307							0.1431822581033657
PLPLALLL	8	Unmodified	_PLPLALLL_					0	0	0			REV__nc|ENSG00000283706|Q9UI38|PRSS50	REV__nc|ENSG00000283706|Q9UI38|PRSS50	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	425.29404	848.573526	-0.010629	-4.5204E-06	0.023864	1.0149E-05	0.013235	5.6287E-06	425.2941729758154	96.707	1.9426	96.701	96.206	98.149	-0.0055466	0.015422	-9.0295E-05	NaN	108.76	562	200	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13078000	+		33160	23238	19306	19307							0.1431822581033657
PLPLAPKPLR	10	Unmodified	_PLPLAPKPLR_					0	0	0			REV__nc|ENSG00000293328|Q8N9T2|NKAPP1	REV__nc|ENSG00000293328|Q8N9T2|NKAPP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.784912109375	2	551.360776	1100.707	0.68986	0.00038036	-0.48566	-0.00026778	0.20419	0.00011258	551.3604239692502	45.73	0.71952	45.73	45.366	46.085	0					75	25	5	0	0	0	0.31267	1	10300	10300		14.838	4.0143	1	447390	+		33161	23260	19307	19308	40500	40500					0.160674649160228
PLPLDPLPSD	10	Unmodified	_PLPLDPLPSD_					0	0	0			REV__ENST00000267615.10_1_14:93407389-93407485:-|nuORF	REV__ENST00000267615.10_1_14:93407389-93407485:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8198852539062	2	532.28714	1062.55973	0.052306	2.7842E-05	-2.6897	-0.0014317	-2.6374	-0.0014038	532.2849718979691	25.188	0.59349	25.157	24.922	25.515	-0.031408					37	20	3	0	0	0	0.31889	1	4064	4064		6.2058	0.97511	1	91355	+		33162	19660	19308	19309	40501	40501					0.030949035205594555
PLPLGRGP	8	Unmodified	_PLPLGRGP_					0	0	0			REV__FAM222A|p.A216Cfs*65|1|0.02|ENSG00000139438|chr12:109768540-109768541|-/CCAGCTCAACCAGCAGTGCCAGGCCCCGGGCGCCTGTT|frameshift_variant	REV__FAM222A|p.A216Cfs*65|1|0.02|ENSG00000139438|chr12:109768540-109768541|-/CCAGCTCAACCAGCAGTGCCAGGCCCCGGGCGCCTGTT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.1910400390625	2	403.747788	805.481023	-0.2124	-8.5757E-05	0.21876	8.8325E-05	0.006362	2.5686E-06	403.74780766026623	30.987	0.54062	31.014	30.81	31.351	0.027157					26	19	2	0	0	0	0.34337	1	5677	5677		5.2307	0	1	73481	+		33163	15985	19309	19310	40502	40502					0.07050140796809501
PLPLMPSK	8	Unmodified	_PLPLMPSK_					0	0	0		ENST00000524023.1_1_7:18674300-18684321:+|nuORF	ENST00000524023.1_1_7:18674300-18684321:+|nuORF	ENST00000524023.1_1_7:18674300-18684321:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2073059082031	2	441.759507	881.50446	0.023495	1.0379E-05	-0.039787	-1.7576E-05	-0.016292	-7.1971E-06	441.75956079274977	26.53	0.48484	26.492	26.235	26.72	-0.038671					26	16	2	0	0	0	0.34247	1	4366	4366		4.756	1.8668	1	49456			33164	11519	19310	19311	40503	40503					0.05896818519113367
PLPLPFHQWFL	11	Unmodified	_PLPLPFHQWFL_					0	0	0		nc|ENSG00000169247|Q8TF17-5|SH3TC2;ENSG00000169247|ENST00000515425|SH3TC2	nc|ENSG00000169247|Q8TF17-5|SH3TC2	nc|ENSG00000169247|Q8TF17-5|SH3TC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2921447753906	3	465.592169	1393.75468	-0.10295	-4.7934E-05	-0.52064	-0.00024241	-0.62359	-0.00029034	465.59179777527817	18.925	0.47565	18.866	18.57	19.046	-0.058172					26	16	2	0	0	0	0.33326	1	2048	2048		1.4551	1.0469	1	39206			33165	6342	19311	19312	40504	40504					0.07355119116209607
PLPMHSLRTT	10	Unmodified	_PLPMHSLRTT_					0	0	0			REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.7879028320312	2	576.813333	1151.61211	0.53859	0.00031067	2.5022	0.0014433	3.0408	0.001754	576.8150576200327	54.222	0.45194	54.285	54.088	54.54	0.063202					21	16	2	0	0	0	0.23542	1	12851	12851		39.95	3.4435	1	295290	+		33166	18433	19312	19313	40505	40505					0.04237163382549625
PLPMHSLRTT	10	Unmodified	_PLPMHSLRTT_					0	0	0			REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.7881469726562	2	576.813333	1151.61211	0.4657	0.00026862	3.9729	0.0022916	4.4386	0.0025603	576.8149641987991	54.51	0.57333	54.494	54.057	54.631	-0.015923					24	19	2	0	0	0	0.23542	1	12923	12923		39.95	3.4435	1	256580	+		33167	18433	19312	19313	40506	40506					0.04237163382549625
PLPMHSLRTT	10	Unmodified	_PLPMHSLRTT_					0	0	0			REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	576.813333	1151.61211	0.49313	0.00028445	1.995	0.0011507	2.4881	0.0014352	576.8151005598424	54.327	0.41211	54.327	54.05	54.462	0	-0.041863	-0.0010176	NaN	39.95	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317480	+		33168	18433	19312	19313							0.04237163382549625
PLPPAQSEIM	10	Unmodified	_PLPPAQSEIM_					0	0	0		ENST00000581054.1_1_17:38192365-38210656:-|nuORF	ENST00000581054.1_1_17:38192365-38210656:-|nuORF	ENST00000581054.1_1_17:38192365-38210656:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7739868164062	2	541.781167	1081.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.69	1	85.681	85.181	86.181	-0.0090027								0	0	0	0.32814	1	22504	22504		24.021	0.87215	1				33169	12080	19313	19314	40507	40507					0.010269635057284177
PLPPFPVIW	9	Unmodified	_PLPPFPVIW_					0	0	0		ENST00000274979.12_2_2:242163924-242164206:+|nuORF	ENST00000274979.12_2_2:242163924-242164206:+|nuORF	ENST00000274979.12_2_2:242163924-242164206:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2377319335938	2	533.310221	1064.60589	0.55217	0.00029448	-0.21832	-0.00011643	0.33386	0.00017805	533.310199502673	75.214	0.16146	75.214	75.154	75.315	0					6	5	2	0	0	0	0.24542	1	19327	19327		14.582	4.3983	1	66114			33170	9101	19314	19315	40508	40508					0.07617013213325663
PLPPGITI	8	Unmodified	_PLPPGITI_					0	0	0			REV__ENSG00000132879|ENST00000251547|FBXO44	REV__ENSG00000132879|ENST00000251547|FBXO44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.2521667480469	2	404.252372	806.49019	-0.01488	-6.0151E-06	0.066378	2.6833E-05	0.051498	2.0818E-05	404.2522764471693	63.275	2.1473	63.275	62.526	64.673	0					181	78	3	0	0	0	0.024389	3	15642	15642;15842;15894		96.119	0	1	1174100	+		33171	15592	19315	19316	40509;40510;40511	40509					0.0792048936248193
PLPPGITI	8	Unmodified	_PLPPGITI_					0	0	0			REV__ENSG00000132879|ENST00000251547|FBXO44	REV__ENSG00000132879|ENST00000251547|FBXO44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2523193359375	2	404.252372	806.49019	-0.059999	-2.4255E-05	0.084254	3.406E-05	0.024254	9.8049E-06	404.2522914651223	63.181	2.3875	63.276	62.602	64.989	0.095726					178	86	3	0	0	0	0.024389	4	15619	15522;15619;15773;15826		96.119	0	1	1293400	+		33172	15592	19315	19316	40512;40513;40514;40515	40513					0.0792048936248193
PLPPGITI	8	Unmodified	_PLPPGITI_					0	0	0			REV__ENSG00000132879|ENST00000251547|FBXO44	REV__ENSG00000132879|ENST00000251547|FBXO44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.252197265625	2	404.252372	806.49019	-0.036714	-1.4842E-05	0.072555	2.9331E-05	0.035841	1.4489E-05	404.25229033946323	63.291	2.2108	63.283	62.542	64.753	-0.0085526					181	80	3	0	0	0	0.024389	2	15551	15551;15647		96.119	0	1	1176900	+		33173	15592	19315	19316	40516;40517	40516					0.0792048936248193
PLPPLGMI	8	Unmodified	_PLPPLGMI_					0	0	0			REV__ENSG00000131398|ENST00000477616|KCNC3	REV__ENSG00000131398|ENST00000477616|KCNC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.5869445800781	2	419.248775	836.482997	0.32567	0.00013654	2.765	0.0011592	3.0906	0.0012957	419.2497933706115	33.42	0.40882	33.486	33.295	33.704	0.06636					24	14	2	0	0	0	0.34147	1	6423	6423		11.114	1.767	1	184560	+		33174	15511	19316	19317	40518	40518					0.0582143349040507
PLPPPLNQ	8	Unmodified	_PLPPPLNQ_					0	0	0			REV__ENSG00000145390|ENST00000692078|USP53	REV__ENSG00000145390|ENST00000692078|USP53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.5640869140625	2	438.252903	874.491253	0.29841	0.00013078	-0.11505	-5.042E-05	0.18336	8.0357E-05	438.25286628651077	47.682	0.68916	47.682	47.187	47.877	0					54	24	3	0	0	0	0.32778	1	10771	10771		14.582	0	1	1279700	+		33175	16291	19317	19318	40519	40519					0.04898703731373644
PLPPPSPVL	9	Unmodified	_PLPPPSPVL_					0	0	0		ENST00000507657.1_1_3:141105779-141105905:+|nuORF	ENST00000507657.1_1_3:141105779-141105905:+|nuORF	ENST00000507657.1_1_3:141105779-141105905:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7787780761719	2	458.778754	915.542954	0.19731	9.0524E-05	-0.41787	-0.00019171	-0.22056	-0.00010119	458.7786555869873	77.113	1.2798	77.169	76.291	77.571	0.055412					64	45	2	0	0	0	0.20344	1	19924	19924		23.148	2.2772	1	375240			33176	11338	19318	19319	40520	40520					0.08180447425286275
PLPPPVKL	8	Unmodified	_PLPPPVKL_					0	0	0			REV__ENSG00000130479|ENST00000324096|MAP1S	REV__ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.78375244140625	2	430.783839	859.553125	0.086713	3.7354E-05	-0.046879	-2.0195E-05	0.039834	1.716E-05	430.7837083044091	53.522	1.2062	53.522	53.228	54.435	0					108	44	4	0	0	0	0.049524	3	12658	12612;12658;12706		78.445	0	1	3133200	+		33177	15459	19319	19320	40521;40522;40523	40522					0.11773055150513301
PLPPPVKL	8	Unmodified	_PLPPPVKL_					0	0	0			REV__ENSG00000130479|ENST00000324096|MAP1S	REV__ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.78387451171875	2	430.783839	859.553125	-0.11032	-4.7524E-05	0.18157	7.8216E-05	0.071245	3.0691E-05	430.7838220401952	53.469	1.0471	53.525	53.273	54.32	0.056255					100	39	4	0	0	0	0.12267	3	12644	12598;12644;12693		56.541	0	1	3462400	+		33178	15459	19319	19320	40524;40525;40526	40525					0.11773055150513301
PLPPPVKL	8	Unmodified	_PLPPPVKL_					0	0	0			REV__ENSG00000130479|ENST00000324096|MAP1S	REV__ENSG00000130479|ENST00000324096|MAP1S	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.7838134765625	2	430.783839	859.553125	0.040812	1.7581E-05	0.024997	1.0768E-05	0.065809	2.8349E-05	430.7837481087528	53.653	1.2779	53.643	53.278	54.556	-0.0096054					102	46	3	0	0	0	0.073545	3	12692	12639;12692;12739		67.035	0	1	3207200	+		33179	15459	19319	19320	40527;40528;40529	40528					0.11773055150513301
PLPPPVKL	8	Unmodified	_PLPPPVKL_					0	0	0			REV__ENSG00000130479|ENST00000324096|MAP1S	REV__ENSG00000130479|ENST00000324096|MAP1S	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.7579345703125	2	430.783839	859.553125	0.040812	1.7581E-05	0.024997	1.0768E-05	0.065809	2.8349E-05	430.7837481087528	53.653	1.2779	53.643	53.278	54.556	-0.0096054					102	46	3	0	0	0	0.27422	1	12622	12622		32.117	0	1	3207200	+		33180	15459	19319	19320	40530	40530					0.11773055150513301
PLPPPVKL	8	Unmodified	_PLPPPVKL_					0	0	0			REV__ENSG00000130479|ENST00000324096|MAP1S	REV__ENSG00000130479|ENST00000324096|MAP1S	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	430.783839	859.553125	0.086713	3.7354E-05	-0.046879	-2.0195E-05	0.039834	1.716E-05	430.7837083044091	53.522	1.2062	53.522	53.228	54.435	0	-0.041595	-9.518E-05	NaN	78.445	108	44	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3133200	+		33181	15459	19319	19320							0.11773055150513301
PLPPPVKL	8	Unmodified	_PLPPPVKL_					0	0	0			REV__ENSG00000130479|ENST00000324096|MAP1S	REV__ENSG00000130479|ENST00000324096|MAP1S	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	430.783839	859.553125	-0.11032	-4.7524E-05	0.18157	7.8216E-05	0.071245	3.0691E-05	430.7838220401952	53.469	1.0471	53.525	53.273	54.32	0.056255	-0.038476	0.00010164	NaN	78.445	100	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3462400	+		33182	15459	19319	19320							0.11773055150513301
PLPQLQVL	8	Unmodified	_PLPQLQVL_					0	0	0		ENSG00000175105|ENST00000636215|ZNF654;ZNF654|p.N73Efs*5|1|0.06|ENSG00000175105|chr3:88139526-88139527|-/GAAC|frameshift_variant;ENST00000473136.4_2_3:88108451-88184391:+|nuORF	ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2842102050781	2	454.284203	906.553853	0.15085	6.853E-05	0.17143	7.7878E-05	0.32228	0.00014641	454.28414712729165	68.132	1.6463	68.132	67.809	69.455	0					125	59	4	0	0	0	0.38703	1	17251	17251		20.871	0	1	1431000			33183	6838	19320	19321	40531	40531					0.0968384979955772
PLPQLQVL	8	Unmodified	_PLPQLQVL_					0	0	0		ENSG00000175105|ENST00000636215|ZNF654;ZNF654|p.N73Efs*5|1|0.06|ENSG00000175105|chr3:88139526-88139527|-/GAAC|frameshift_variant;ENST00000473136.4_2_3:88108451-88184391:+|nuORF	ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2842102050781	2	454.284203	906.553853	0.19502	8.8594E-05	0.0616	2.7984E-05	0.25662	0.00011658	454.28415418217355	68.114	1.6559	68.096	67.837	69.493	-0.017769					125	58	3	0	0	0	0.33916	1	17250	17250		26.341	1.6674	1	1284100			33184	6838	19320	19321	40532	40532					0.0968384979955772
PLPQREVS	8	Unmodified	_PLPQREVS_					0	0	0		ENSG00000157741|ENST00000473989|UBN2;UBN2|p.D255Vfs*18|1|0.02|ENSG00000157741|chr7:139258586-139258587|-/GT|frameshift_variant;nc|ENSG00000157741|Q6ZU65-2|UBN2	ENSG00000157741|ENST00000473989|UBN2	ENSG00000157741|ENST00000473989|UBN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7976989746094	2	463.258717	924.50288	-0.7148	-0.00033114	-0.17011	-7.8806E-05	-0.88491	-0.00040994	463.25855513381777	34.804	0.35603	34.881	34.704	35.06	0.077377					17	12	2	0	0	0	0.34092	1	6931	6931		4.756	0	1	139050			33185	5323	19321	19322	40533	40533					0.03760900754718932
PLPRDQAL	8	Unmodified	_PLPRDQAL_					0	0	0			REV__ENST00000416860.2_2_1:2486942-2487152:-|nuORF	REV__ENST00000416860.2_2_1:2486942-2487152:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.27752685546875	2	455.261259	908.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.622	1	77.677	77.177	78.177	0.055412								0	0	0	0.35779	1	20035	20035		11.114	0	1		+		33186	20825	19322	19323	40534	40534					0.050052046173163944
PLPRDQAL	8	Unmodified	_PLPRDQAL_					0	0	0			REV__ENST00000416860.2_2_1:2486942-2487152:-|nuORF	REV__ENST00000416860.2_2_1:2486942-2487152:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.277587890625	2	455.261259	908.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.778	1	77.834	77.334	78.334	0.055412								0	0	0	0.35779	1	20083	20083		11.114	0	1		+		33187	20825	19322	19323	40535	40535					0.050052046173163944
PLPRKIRVV	9	Unmodified	_PLPRKIRVV_					0	0	0			REV__ENSG00000174429|ENST00000311955|ABRA	REV__ENSG00000174429|ENST00000311955|ABRA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7579956054688	2	539.366393	1076.71823	0.40919	0.0002207	-3.0852	-0.001664	-2.676	-0.0014433	539.3647339313311	92.795	0.069016	92.884	92.854	92.923	0.089195					7	5	2	0	0	0	0.26117	1	24686	24686		0.6015	0	1	84758	+		33188	17832	19323	19324	40536	40536					0.18294287010166954
PLPRQGVK	8	Unmodified	_PLPRQGVK_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2348327636719	2	447.779619	893.544686	0.072673	3.2541E-05	-1.3643	-0.00061092	-1.2917	-0.00057838	447.77877014683884	18.584	0.5404	18.584	18.299	18.839	0					32	18	2	0	0	0	0.34131	1	2014	2014		12.532	1.7076	1	48645			33189	3048	19324	19325	40537	40537					0.09365501233901341
PLPRTLRLRK	10	Unmodified	_PLPRTLRLRK_					0	0	0		ENST00000409870.1_1_2:191045212-191045605:+|nuORF	ENST00000409870.1_1_2:191045212-191045605:+|nuORF	ENST00000409870.1_1_2:191045212-191045605:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.8764953613281	3	417.278696	1248.81426	0.11625	4.8509E-05	-0.34754	-0.00014502	-0.23129	-9.6514E-05	417.27845469433714	26.033	0.48919	26.01	25.867	26.356	-0.022238					27	17	2	0	0	0	0.32051	1	4208	4208		3.8763	0.55669	1	82893			33190	10259	19325	19326	40538	40538					0.19980434850231177
PLPSFNLTI	9	Unmodified	_PLPSFNLTI_					0	0	0		MBD5|p.L1305Pfs*9|1|0.04|ENSG00000204406|chr2:148490245-148490248|TAAG/-|frameshift_variant;MBD5|p.L1305Ffs*21|1|0.09|ENSG00000204406|chr2:148490243-148490244|-/TTCC|frameshift_variant;ENSG00000204406|ENST00000642680|MBD5	MBD5|p.L1305Pfs*9|1|0.04|ENSG00000204406|chr2:148490245-148490248|TAAG/-|frameshift_variant	MBD5|p.L1305Pfs*9|1|0.04|ENSG00000204406|chr2:148490245-148490248|TAAG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3033447265625	2	501.286943	1000.55933	0.42905	0.00021508	1.0239	0.00051325	1.4529	0.00072833	501.2874915572467	72.183	0.46313	72.183	71.911	72.374	0					28	16	2	0	0	0	0.23775	1	18378	18378		18.135	0	1	188190			33191	8225	19326	19327	40539	40539					0.059075285913763764
PLPSGSPLFY	10	Unmodified	_PLPSGSPLFY_					0	0	0			REV__ENST00000547260.5_1_12:49168067-49168277:-|nuORF	REV__ENST00000547260.5_1_12:49168067-49168277:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.2855834960938	2	539.2844	1076.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.35	1	104.35	103.85	104.85	0.0011444								0	0	0	0.36787	1	27737	27737		7.2892	0.56607	1		+		33192	22178	19327	19328	40540	40540					0.01903224728744135
PLPSQLLSK	9	Unmodified	_PLPSQLLSK_					0	0	0		ENST00000488876.5_1_17:37814522-37819158:+|nuORF;ENST00000583582.5_1_17:37814522-37814894:+|nuORF	ENST00000488876.5_1_17:37814522-37819158:+|nuORF	ENST00000488876.5_1_17:37814522-37819158:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.284423828125	2	491.800217	981.585882	0.48335	0.00023771	-0.65866	-0.00032393	-0.17531	-8.6217E-05	491.7998296719752	49.198	0.32657	49.198	48.995	49.321	0					21	11	2	0	0	0	0.24289	1	11268	11268		8.7454	0.58988	1	246160			33193	11140	19328	19329	40541	40541					0.09435217482712233
PLPSYLFK	8	Unmodified	_PLPSYLFK_					0	0	0		SFMBT1|p.I816Nfs*3|1|0.34|ENSG00000163935|chr3:52906126-52906126|A/-|frameshift_variant;nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	SFMBT1|p.I816Nfs*3|1|0.34|ENSG00000163935|chr3:52906126-52906126|A/-|frameshift_variant	SFMBT1|p.I816Nfs*3|1|0.34|ENSG00000163935|chr3:52906126-52906126|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.765625	2	482.778754	963.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.605	1	17.605	17.105	18.105	0								0	0	0	0.36623	1	1680	1680		7.2892	0	1				33194	5760	19329	19330	40542	40542					0.05972447425290284
PLPTFLVAG	9	Unmodified	_PLPTFLVAG_					0	0	0		ENSG00000160712|ENST00000368485|IL6R	ENSG00000160712|ENST00000368485|IL6R	ENSG00000160712|ENST00000368485|IL6R	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.786865234375	2	457.770929	913.527304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.693	1	39.792	39.292	40.292	0.099407								0	0	0	0.19804	1	8390	8390		23.148	8.5667	1				33195	5479	19330	19331	40543	40543					0.06708160908237915
PLPTKKQIL	9	Unmodified	_PLPTKKQIL_					0	0	0			REV__TRAPPC11|p.P618Lfs*20|1|0.29|ENSG00000168538|chr4:183686707-183686710|CCCA/-|frameshift_variant	REV__TRAPPC11|p.P618Lfs*20|1|0.29|ENSG00000168538|chr4:183686707-183686710|CCCA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2870483398438	2	519.33951	1036.66447	0.46621	0.00024212	0.77244	0.00040116	1.2387	0.00064328	519.3396234967333	64.765	1.1787	64.765	64.398	65.577	0					83	42	3	0	0	0	0.25811	1	16072	16072		2.3027	0	1	564050	+		33196	17467	19331	19332	40544	40544					0.14760069787803332
PLPTKKQIL	9	Unmodified	_PLPTKKQIL_					0	0	0			REV__TRAPPC11|p.P618Lfs*20|1|0.29|ENSG00000168538|chr4:183686707-183686710|CCCA/-|frameshift_variant	REV__TRAPPC11|p.P618Lfs*20|1|0.29|ENSG00000168538|chr4:183686707-183686710|CCCA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2871704101562	2	519.33951	1036.66447	0.46924	0.00024369	0.63251	0.00032849	1.1018	0.00057218	519.339596396698	64.62	0.88548	64.713	64.309	65.194	0.09288					77	32	3	0	0	0	0.25811	1	16025	16025		2.3027	0	1	743040	+		33197	17467	19331	19332	40545	40545					0.14760069787803332
PLPTKKQIL	9	Unmodified	_PLPTKKQIL_					0	0	0			REV__TRAPPC11|p.P618Lfs*20|1|0.29|ENSG00000168538|chr4:183686707-183686710|CCCA/-|frameshift_variant	REV__TRAPPC11|p.P618Lfs*20|1|0.29|ENSG00000168538|chr4:183686707-183686710|CCCA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.287109375	2	519.33951	1036.66447	0.34937	0.00018144	0.84158	0.00043707	1.191	0.00061851	519.3396590558616	64.742	1.0075	64.733	64.443	65.45	-0.0095291					69	36	3	0	0	0	0.25811	1	16060	16060		2.3027	0	1	664810	+		33198	17467	19331	19332	40546	40546					0.14760069787803332
PLPTQNKQRAI	11	Unmodified	_PLPTQNKQRAI_					0	0	0			REV__ENSG00000187325|ENST00000341864|TAF9B	REV__ENSG00000187325|ENST00000341864|TAF9B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3687744140625	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.04	1	118.07	117.57	118.57	0.023476								0	0	0	0.38137	1	30580	30580		1.0715	0.10919	1		+		33199	18502	19332	19333	40547	40547					0.10339555100085818
PLPTQNKQRAI	11	Unmodified	_PLPTQNKQRAI_					0	0	0			REV__ENSG00000187325|ENST00000341864|TAF9B	REV__ENSG00000187325|ENST00000341864|TAF9B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3681640625	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.42	1	118.45	117.95	118.95	0.026253								0	0	0	0.38137	1	30667	30667		1.0715	0.5467	1		+		33200	18502	19332	19333	40548	40548					0.10339555100085818
PLPVASSPTL	10	Unmodified	_PLPVASSPTL_					0	0	0			REV__ENST00000610046.2_1_7:130126772-130126913:-|nuORF	REV__ENST00000610046.2_1_7:130126772-130126913:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2958679199219	2	491.2844	980.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.214	1	81.19	80.69	81.69	-0.02404								0	0	0	0.35948	1	21128	21128		10.824	2.2306	1		+		33201	22678	19333	19334	40549	40549					0.06319224728770223
PLPVEMLLRTI	11	Unmodified	_PLPVEMLLRTI_					0	0	0			REV__ENST00000481900.5_1_1:91844026-91850765:-|nuORF	REV__ENST00000481900.5_1_1:91844026-91850765:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8829956054688	2	641.383591	1280.75263	0.61802	0.00039639	-0.12896	-8.2715E-05	0.48905	0.00031367	641.384807268107	93.247	1.8269	93.247	92.734	94.561	-0.00051117					305	153	3	0	0	0	0.46475	1	24758	24758		2.7352	1.2533	1	573760	+		33202	16997	19334	19335	40550	40550					0.12348322316120175
PLPVQVFNL	9	Unmodified	_PLPVQVFNL_					0	0	0		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-6|GPS1;ENST00000320548.8_2_17:80009774-80010253:+|nuORF;ENST00000578642.1_1_17:80009774-80011284:+|nuORF	ENSG00000169727|ENST00000578552|GPS1	ENSG00000169727|ENST00000578552|GPS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.802978515625	2	513.80276	1025.59097	0.46206	0.00023741	-0.2033	-0.00010446	0.25876	0.00013295	513.8026915528432	84.079	0.39285	84.156	84.049	84.442	0.077095					22	15	2	0	0	0	0.20626	1	22027	22027		22.736	12.662	1	205050			33203	6379	19335	19336	40551	40551					0.0791952134532039
PLPVQVFNL	9	Unmodified	_PLPVQVFNL_					0	0	0		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-6|GPS1;ENST00000320548.8_2_17:80009774-80010253:+|nuORF;ENST00000578642.1_1_17:80009774-80011284:+|nuORF	ENSG00000169727|ENST00000578552|GPS1	ENSG00000169727|ENST00000578552|GPS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.80276	1025.59097	0.57053	0.00029314	0.18623	9.5684E-05	0.75676	0.00038883	513.8029817530545	84.296	0.56191	84.296	83.993	84.555	0	0.08466	0.00017886	NaN	22.736	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127680			33204	6379	19335	19336							0.0791952134532039
PLPVQVFNL	9	Unmodified	_PLPVQVFNL_					0	0	0		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-6|GPS1;ENST00000320548.8_2_17:80009774-80010253:+|nuORF;ENST00000578642.1_1_17:80009774-80011284:+|nuORF	ENSG00000169727|ENST00000578552|GPS1	ENSG00000169727|ENST00000578552|GPS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	513.80276	1025.59097	0.41941	0.00021549	0.22383	0.000115	0.64324	0.0003305	513.8028796128361	84.199	0.44156	84.182	84.047	84.489	-0.016823	-0.02913	0.0002175	NaN	22.736	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163490			33205	6379	19335	19336							0.0791952134532039
PLPVSPSL	8	Unmodified	_PLPVSPSL_					0	0	0		ENST00000476040.6_1_1:110210707-110212286:+|nuORF	ENST00000476040.6_1_1:110210707-110212286:+|nuORF	ENST00000476040.6_1_1:110210707-110212286:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2419128417969	2	405.242004	808.469455	0.15454	6.2626E-05	0.010789	4.372E-06	0.16533	6.6998E-05	405.24183404705974	54.993	1.6596	55.056	54.353	56.013	0.063202					117	61	2	0	0	0	0.022392	2	13144	13095;13144		98.807	0	1	1441300			33206	10942	19336	19337	40552;40553	40553					0.05755898982818053
PLPVVFLT	8	Unmodified	_PLPVVFLT_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.9328308105469	2	443.275847	884.537141	0.21572	9.5624E-05	-0.1497	-6.6357E-05	0.066023	2.9267E-05	443.2757924738298	88.155	0.52224	88.244	88.052	88.574	0.089195					35	24	2	0	0	0	0.34046	1	23367	23367		9.3474	9.3474	1	73158			33207	8310	19337	19338	40554	40554					0.09025348913621656
PLQAPLSLP	9	Unmodified	_PLQAPLSLP_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.267333984375	2	468.28166	934.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.495	1	76.464	75.964	76.964	-0.031487								0	0	0	0.24715	1	19690	19690		7.2892	0	1				33208	7353	19338	19339	40555	40555					0.07887545936955576
PLQFKELI	8	Unmodified	_PLQFKELI_					0	0	0			REV__MXRA5|p.T1078Efs*22|1|0.22|ENSG00000101825|chrX:3322444-3322453|TGGAGTGTGT/-|frameshift_variant	REV__MXRA5|p.T1078Efs*22|1|0.22|ENSG00000101825|chrX:3322444-3322453|TGGAGTGTGT/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.287353515625	2	494.29731	986.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.349	1	69.349	68.849	69.849	0								0	0	0	0.35251	1	17520	17520		13.508	0	1		+		33209	14287	19339	19340	40556	40556					0.08624118971033568
PLQGGSRK	8	Unmodified	_PLQGGSRK_					0	0	0		ENST00000477428.5_1_7:129273335-129273395:+|nuORF	ENST00000477428.5_1_7:129273335-129273395:+|nuORF	ENST00000477428.5_1_7:129273335-129273395:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2564392089844	2	421.745776	841.477	-0.19897	-8.3913E-05	-0.46329	-0.00019539	-0.66226	-0.00027931	421.7457245210616	16.094	0.24359	15.98	15.866	16.11	-0.11434					10	7	2	0	0	0	0.30503	1	1262	1262		30.225	30.225	1	19255			33210	10955	19340	19341	40557	40557					0.04992051303088374
PLQGLLGL	8	Unmodified	_PLQGLLGL_					0	0	0		nc|ENSG00000117245|Q9P2E2|KIF17;ENSG00000117245|ENST00000400463|KIF17	nc|ENSG00000117245|Q9P2E2|KIF17	nc|ENSG00000117245|Q9P2E2|KIF17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.75775146484375	2	405.757821	809.501089	-0.25324	-0.00010275	0.038119	1.5467E-05	-0.21512	-8.7285E-05	405.7578173297436	69.505	1.0717	69.505	69.229	70.301	0					79	38	3	0	0	0	0.14465	1	17614	17614		52.693	0	1	846470			33211	2785	19341	19342	40558	40558					0.08871891736748694
PLQGLLGL	8	Unmodified	_PLQGLLGL_					0	0	0		nc|ENSG00000117245|Q9P2E2|KIF17;ENSG00000117245|ENST00000400463|KIF17	nc|ENSG00000117245|Q9P2E2|KIF17	nc|ENSG00000117245|Q9P2E2|KIF17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.7576904296875	2	405.757821	809.501089	-0.20556	-8.3409E-05	0.025899	1.0509E-05	-0.17966	-7.29E-05	405.7578114831822	69.512	1.1526	69.578	69.232	70.384	0.066048					104	40	4	0	0	0	0.14465	2	17540	17540;17590		52.693	0	1	907560			33212	2785	19341	19342	40559;40560	40559					0.08871891736748694
PLQGLLGL	8	Unmodified	_PLQGLLGL_					0	0	0		nc|ENSG00000117245|Q9P2E2|KIF17;ENSG00000117245|ENST00000400463|KIF17	nc|ENSG00000117245|Q9P2E2|KIF17	nc|ENSG00000117245|Q9P2E2|KIF17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.7577209472656	2	405.757821	809.501089	-0.15	-6.0862E-05	-0.019796	-8.0323E-06	-0.16979	-6.8895E-05	405.7577914985491	69.568	1.1712	69.546	69.209	70.381	-0.022087					99	42	4	0	0	0	0.14465	2	17544	17544;17598		52.693	0	1	816370			33213	2785	19341	19342	40561;40562	40561					0.08871891736748694
PLQGVLASL	9	Unmodified	_PLQGVLASL_					0	0	0		ENST00000592456.1_1_17:76167504-76168014:+|nuORF	ENST00000592456.1_1_17:76167504-76168014:+|nuORF	ENST00000592456.1_1_17:76167504-76168014:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.758056640625	2	449.273835	896.533118	0.12869	5.7816E-05	-0.25162	-0.00011304	-0.12293	-5.5229E-05	449.27362005107796	68.529	0.7706	68.601	68.134	68.905	0.071938					38	28	2	0	0	0	0.25066	1	17316	17316		7.2892	0	1	218140			33214	12197	19342	19343	40563	40563					0.08071259419898524
PLQIQLTTL	9	Unmodified	_PLQIQLTTL_					0	0	0		ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7666015625	2	513.813325	1025.6121	0.3406	0.000175	0.8336	0.00042831	1.1742	0.00060332	513.8139224020382	70.653	0.36108	70.653	70.512	70.873	0					22	12	2	0	0	0	0.22674	1	17960	17960		22.736	0	1	262620			33215	842	19343	19344	40564	40564					0.10031486654179389
PLQIQLTTL	9	Unmodified	_PLQIQLTTL_					0	0	0		ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7667236328125	2	513.813325	1025.6121	0.26762	0.00013751	0.64919	0.00033356	0.91681	0.00047107	513.8136704994208	70.659	0.28103	70.72	70.574	70.855	0.060783					18	9	2	0	0	0	0.23235	1	17900	17900		21.537	0	1	280020			33216	842	19343	19344	40565	40565					0.10031486654179389
PLQLADLVVN	10	Unmodified	_PLQLADLVVN_					0	0	0			REV__nc|ENSG00000155034|Q96ME1-3|FBXL18	REV__nc|ENSG00000155034|Q96ME1-3|FBXL18	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.33349609375	2	541.316232	1080.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.939	1	17.822	17.322	18.322	-0.11739								0	0	0	0.37664	1	1783	1783		3.5965	1.2938	1		+		33217	16687	19344	19345	40566	40566					0.08082585165857381
PLQMMALHI	9	Unmodified	_PLQMMALHI_					0	0	0		nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.T4618Pfs*43|1|0.02|ENSG00000198838|chr15:33854439-33854440|-/TCCAGGTGCAG|frameshift_variant;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3	nc|ENSG00000198838|Q15413-3|RYR3	nc|ENSG00000198838|Q15413-3|RYR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7828369140625	2	527.282823	1052.55109	0.59949	0.0003161	-3.1463	-0.001659	-2.5468	-0.0013429	527.7823828631124	89.45	0.95029	89.449	88.801	89.751	-0.00080872					120	53	3	0	0	0	0.28128	1	23680	23680		11.64	3.7301	1	194420			33218	8139	19345	19346	40567	40567					0.0269193507874661
PLQNYHTVLL	10	Unmodified	_PLQNYHTVLL_					0	0	0			REV__ENST00000587091.5_2_X:73751613-73751946:+|nuORF	REV__ENST00000587091.5_2_X:73751613-73751946:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.2922973632812	2	599.334956	1196.65536	0.38918	0.00023325	-0.24159	-0.00014479	0.14759	8.8458E-05	599.334924376405	41.934	0.2603	41.934	41.825	42.085	0					12	8	2	0	0	0	0.29038	1	9095	9095		18.146	3.3081	1	618710	+		33219	22529	19346	19347	40568	40568					0.06489676431465341
PLQPLTVTV	9	Unmodified	_PLQPLTVTV_					0	0	0		nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7605285644531	2	484.294768	966.574983	0.14536	7.0396E-05	0.12788	6.1933E-05	0.27324	0.00013233	484.29476625298764	73.907	0.67658	73.96	73.47	74.146	0.052361					33	23	2	0	0	0	0.22596	1	18806	18806		21.747	1.293	1	220990			33220	12612	19347	19348	40569	40569					0.09035815108427414
PLQRGPLVRQI	11	Unmodified	_PLQRGPLVRQI_					0	0	0			REV__Harlequin-int_dup21|chr1:46331236-46332068:-|3.510540639652003|0.0357277356843712|6.62|497.0|23|3|sense	REV__Harlequin-int_dup21|chr1:46331236-46332068:-|3.510540639652003|0.0357277356843712|6.62|497.0|23|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2665710449219	3	426.266456	1275.77754	-0.056288	-2.3994E-05	0.096676	4.121E-05	0.040387	1.7216E-05	426.26648759664874	52.15	1.0051	52.201	51.817	52.822	0.050575					98	36	5	0	0	0	0.34542	1	12287	12287		10.315	0	1	4092500	+		33221	13159	19348	19349	40570	40570					0.1506813823370976
PLQRLTAL	8	Unmodified	_PLQRLTAL_					0	0	0			REV__ENST00000571240.1_1_17:7946036-7951880:+|nuORF	REV__ENST00000571240.1_1_17:7946036-7951880:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2998352050781	2	456.287277	910.560001	0.5966	0.00027222	-0.44917	-0.00020495	0.14743	6.7272E-05	456.28694061307107	50.153	0.67107	50.198	49.905	50.576	0.044891					43	24	3	0	0	0	0.42446	1	11545	11545		14.582	0	1	462710	+		33222	18083	19349	19350	40571	40571					0.10114368031054255
PLQSLKNP	8	Unmodified	_PLQSLKNP_					0	0	0			REV__nc|ENSG00000134982|P25054-2|APC	REV__nc|ENSG00000134982|P25054-2|APC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7509460449219	2	448.763635	895.512717	0.01368	6.1393E-06	-0.55453	-0.00024885	-0.54085	-0.00024271	448.76333913549865	22.606	0.41465	22.519	22.296	22.711	-0.087608					28	14	3	0	0	0	0.43302	1	3236	3236		11.64	0	1	74569	+		33223	15714	19350	19351	40572	40572					0.06078088760091305
PLQTLPVLK	9	Unmodified	_PLQTLPVLK_					0	0	0			REV__ENST00000321895.6_1_3:49201211-49201499:-|nuORF	REV__ENST00000321895.6_1_3:49201211-49201499:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.29266357421875	2	504.826235	1007.63792	0.7012	0.00035398	-1.332	-0.0006724	-0.63075	-0.00031842	504.8259004833669	60.636	0.37005	60.733	60.579	60.949	0.096985					23	12	3	0	0	0	0.24913	1	14885	14885		1.8442	0	1	236770	+		33224	19974	19351	19352	40573	40573					0.13440380896452098
PLQTYIQNLF	10	Unmodified	_PLQTYIQNLF_					0	0	0			REV__ENSG00000215182|ENST00000621226|MUC5AC	REV__ENSG00000215182|ENST00000621226|MUC5AC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.239501953125	3	412.892284	1235.65502	0.088165	3.6403E-05	-2.4008	-0.00099128	-2.3127	-0.00095488	412.89118219077943	49.209	0.32139	49.209	48.97	49.292	0					14	11	2	0	0	0	0.31876	1	11291	11291		7.1017	0	1	100550	+		33225	19075	19352	19353	40574	40574					0.04662256711594637
PLQVLLTV	8	Unmodified	_PLQVLLTV_					0	0	0		ENST00000498771.5_1_7:134132683-134136556:-|nuORF	ENST00000498771.5_1_7:134132683-134136556:-|nuORF	ENST00000498771.5_1_7:134132683-134136556:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7865905761719	2	441.786579	881.558604	0.5434	0.00024007	-0.32718	-0.00014454	0.21623	9.5527E-05	441.7863685470176	78.442	0.80938	78.442	78.12	78.929	0					61	30	3	0	0	0	0.25425	1	20316	20316		36.044	1.9418	1	455900			33226	11257	19353	19354	40575	40575					0.11308733942314575
PLQVNITL	8	Unmodified	_PLQVNITL_					0	0	0		nc|ENSG00000162631|Q9Y2I2-2|NTNG1;ENST00000294649.8_1_1:107691215-107950335:+|nuORF;nc|ENSG00000162631|Q9Y2I2-1|NTNG1;nc|ENSG00000162631|Q9Y2I2-5|NTNG1;nc|ENSG00000162631|Q9Y2I2-4|NTNG1;nc|ENSG00000162631|Q9Y2I2-6|NTNG1;ENSG00000162631|ENST00000370068|NTNG1;ENST00000477948.1_1_1:107866915-107871621:+|nuORF	nc|ENSG00000162631|Q9Y2I2-2|NTNG1	nc|ENSG00000162631|Q9Y2I2-2|NTNG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7580871582031	2	449.273835	896.533118	0.29142	0.00013093	-0.43784	-0.00019671	-0.14642	-6.5784E-05	449.27350553905734	68.604	0.57977	68.585	68.315	68.895	-0.019157					30	20	2	0	0	0	0.3366	1	17293	17293		12.532	5.2423	1	325360			33227	5590	19354	19355	40576	40576					0.08071259419898524
PLQWVEGEY	9	Unmodified	_PLQWVEGEY_					0	0	0			REV__LTR19B_dup80|chr6:106743802-106744351:-|4.284117748742692|0.4191254365420057|3.35|537.0|27|2|anti-sense	REV__LTR19B_dup80|chr6:106743802-106744351:-|4.284117748742692|0.4191254365420057|3.35|537.0|27|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.316162109375	2	560.769114	1119.52368	0.26514	0.00014868	0.12368	6.9358E-05	0.38882	0.00021804	560.7696155996643	94.726	0.31371	94.808	94.604	94.917	0.082779					32	22	2	0	0	0	0.25417	1	25245	25245		8.5933	1.304	1	54834	+		33228	22841	19355	19356	40577	40577					-0.0313055365627406
PLQYPLSQ	8	Unmodified	_PLQYPLSQ_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-2|NLRC5	REV__nc|ENSG00000140853|Q86WI3-2|NLRC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7744140625	2	473.255643	944.496732	-0.05458	-2.583E-05	-2.064	-0.00097681	-2.1186	-0.0010026	473.2547785149117	14.771	0.69175	14.666	14.131	14.823	-0.10466					32	23	2	0	0	0	0.34046	1	768	768		14.582	0	1	88447	+		33229	16055	19356	19357	40578	40578					0.022263825232016643
PLQYPLSQ	8	Unmodified	_PLQYPLSQ_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-2|NLRC5	REV__nc|ENSG00000140853|Q86WI3-2|NLRC5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	473.255643	944.496732	-0.080813	-3.8245E-05	-2.8628	-0.0013549	-2.9436	-0.0013931	473.2542567926112	14.821	0.30762	14.756	14.539	14.846	-0.064413	0.06508	-0.0001391	NaN	14.582	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83219	+		33230	16055	19356	19357							0.022263825232016643
PLRAFDMIN	9	Unmodified	_PLRAFDMIN_					0	0	0		ENSG00000106066|ENST00000265394|CPVL	ENSG00000106066|ENST00000265394|CPVL	ENSG00000106066|ENST00000265394|CPVL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7977294921875	2	538.781502	1075.54845	0.71663	0.00038611	0.77104	0.00041542	1.4877	0.00080153	539.2834335926314	84.55	0.82932	84.55	84.186	85.015	0					41	31	2	0	0	0	0.23007	1	22163	22163		19.257	1.122	1	169590			33231	2053	19357	19358	40579	40579					0.013698029454417338
PLRALSIII	9	Unmodified	_PLRALSIII_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3341064453125	2	498.334227	994.653902	0.37034	0.00018455	0.03689	1.8384E-05	0.40723	0.00020294	498.3342956022932	67.465	0.5414	67.465	67.165	67.706	0					68	18	4	0	0	0	0.057976	1	16883	16883		49.933	13.806	1	12553000	+		33232	18733	19358	19359	40580	40580					0.15636087133384535
PLRALSIII	9	Unmodified	_PLRALSIII_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.33416748046875	2	498.334227	994.653902	0.3947	0.00019669	0.0042454	2.1156E-06	0.39895	0.00019881	498.3342605778695	67.343	0.56468	67.421	67.122	67.687	0.078041					80	19	5	0	0	0	0.057976	1	16849	16849		49.933	15.531	1	12521000	+		33233	18733	19358	19359	40581	40581					0.15636087133384535
PLRALSIII	9	Unmodified	_PLRALSIII_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.334228515625	2	498.334227	994.653902	0.23413	0.00011667	0.21496	0.00010712	0.44908	0.00022379	498.3343526930711	67.494	0.55652	67.477	67.115	67.672	-0.016296					73	18	5	0	0	0	0.057976	1	16876	16876		49.933	15.531	1	10990000	+		33234	18733	19358	19359	40582	40582					0.15636087133384535
PLREQKLT	8	Unmodified	_PLREQKLT_					0	0	0		ENST00000495275.1_1_1:173793139-173793442:-|nuORF;ENST00000356198.6_1_1:173793298-173793442:-|nuORF	ENST00000495275.1_1_1:173793139-173793442:-|nuORF	ENST00000495275.1_1_1:173793139-173793442:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.26934814453125	2	492.795466	983.57638	0.356	0.00017544	-0.80394	-0.00039618	-0.44794	-0.00022074	492.79515741699475	39.771	0.60821	39.871	39.593	40.201	0.099407					36	21	2	0	0	0	0.32435	1	8452	8452		11.64	0	1	338670			33235	9616	19359	19360	40583	40583					0.08393449197160407
PLREWTHR	8	Unmodified	_PLREWTHR_					0	0	0		ENST00000547437.5_1_19:14721085-14721178:+|nuORF	ENST00000547437.5_1_19:14721085-14721178:+|nuORF	ENST00000547437.5_1_19:14721085-14721178:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3355712890625	2	547.796332	1093.57811	0.393	0.00021528	-0.65803	-0.00036047	-0.26503	-0.00014518	547.7960202561396	22.478	0.54469	22.391	22.166	22.711	-0.087608					44	19	3	0	0	0	0.34319	1	3205	3205		5.7604	1.0044	1	175310			33236	11767	19360	19361	40584	40584					0.03506503005769446
PLRGQHLL	8	Unmodified	_PLRGQHLL_					0	0	0			REV__nc|ENSG00000185176|A6NM10|AQP12B	REV__nc|ENSG00000185176|A6NM10|AQP12B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2774658203125	2	467.285069	932.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.443	1	95.439	94.939	95.939	-0.0038147								0	0	0	0.35985	1	25497	25497		10.183	0	1		+		33237	18342	19361	19362	40585	40585					0.08660903608188164
PLRGYILTF	9	Unmodified	_PLRGYILTF_					0	0	0		nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1;nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2	nc|ENSG00000074803|Q13621-3|SLC12A1;nc|ENSG00000064651|P55011-3|SLC12A2	nc|ENSG00000074803|Q13621-3|SLC12A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3302612304688	2	540.316035	1078.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.747	1	76.8	76.3	77.3	0.053413								0	0	0	0.17683	1	19770	19770		28.487	11.374	1				33238	1029;791	19362	19363	40586	40586					0.08135210236628154
PLRHRFHHY	9	Unmodified	_PLRHRFHHY_					0	0	0			REV__ENSG00000205076|ENST00000378626|LGALS7	REV__ENSG00000205076|ENST00000378626|LGALS7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7581787109375	3	421.559974	1261.65809	-0.395	-0.00016651	1.5778	0.00066514	1.1828	0.00049863	421.56060828198247	12.601	0.17283	12.601	12.526	12.699	0					7	5	2	0	0	0	0.26238	1	153	153		1.0715	0.29493	1	20134	+		33239	18050	19363	19364	40587	40587					0.037729893996583996
PLRHRRRRRG	10	Unmodified	_PLRHRRRRRG_					0	0	0			REV__ENST00000592217.2_1_19:46271832-46273041:+|nuORF	REV__ENST00000592217.2_1_19:46271832-46273041:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.95208740234375	3	453.952088	1358.83443	0.24548	0.00011144	0.059637	2.7072E-05	0.30512	0.00013851	453.95196024753704	94.768	0.82199	94.766	94.479	95.301	-0.0020142					204	74	5	0	0	0	0.4155	1	25285	25285		0.62683	0.62683	1	545840	+		33240	22571	19364	19365	40588	40588					0.1693704335343682
PLRHRRRRRG	10	Unmodified	_PLRHRRRRRG_					0	0	0			REV__ENST00000592217.2_1_19:46271832-46273041:+|nuORF	REV__ENST00000592217.2_1_19:46271832-46273041:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	453.952088	1358.83443	-0.028804	-1.3075E-05	0.21776	9.8852E-05	0.18895	8.5776E-05	453.9520164216873	94.782	0.75853	94.782	94.534	95.293	0	0.0064425	0.00011447	NaN	0.62683	163	67	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255510	+		33241	22571	19364	19365							0.1693704335343682
PLRHRRRRRG	10	Unmodified	_PLRHRRRRRG_					0	0	0			REV__ENST00000592217.2_1_19:46271832-46273041:+|nuORF	REV__ENST00000592217.2_1_19:46271832-46273041:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	453.952088	1358.83443	0.089786	4.0758E-05	0.15967	7.2484E-05	0.24946	0.00011324	453.9520281939281	94.695	0.82764	94.778	94.485	95.313	0.082779	0.0027002	3.5368E-05	NaN	0.62683	200	73	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	705020	+		33242	22571	19364	19365							0.1693704335343682
PLRIPCGFLK	10	Unmodified	_PLRIPCGFLK_					0	0	0		ENST00000293825.10_1_17:7460975-7461164:+|nuORF	ENST00000293825.10_1_17:7460975-7461164:+|nuORF	ENST00000293825.10_1_17:7460975-7461164:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.8052368164062	2	572.338987	1142.66342	0.20728	0.00011863	1.6708	0.00095626	1.8781	0.0010749	572.3399472811465	42.693	0.67978	42.778	42.378	43.058	0.085197					36	19	3	0	0	0	0.31358	1	9387	9387		9.3831	5.0539	1	499610			33243	9167	19365	19366	40589	40589					0.09779532147240388
PLRIPCGFLK	10	Unmodified	_PLRIPCGFLK_					0	0	0		ENST00000293825.10_1_17:7460975-7461164:+|nuORF	ENST00000293825.10_1_17:7460975-7461164:+|nuORF	ENST00000293825.10_1_17:7460975-7461164:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	572.338987	1142.66342	0.21637	0.00012384	1.6571	0.00094841	1.8735	0.0010723	572.339698299754	42.971	0.52844	42.971	42.652	43.18	0	0.096587	-8.2516E-06	NaN	8.1555	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	506340			33244	9167	19365	19366							0.09779532147240388
PLRKKWNK	8	Unmodified	_PLRKKWNK_					0	0	0		ENST00000589346.1_1_18:13666456-13666642:-|nuORF	ENST00000589346.1_1_18:13666456-13666642:-|nuORF	ENST00000589346.1_1_18:13666456-13666642:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.8483276367188	2	535.335093	1068.65563	0.17241	9.2296E-05	-0.43569	-0.00023324	-0.26329	-0.00014095	535.3346901328027	19.203	0.41965	19.087	18.891	19.311	-0.11592					21	14	2	0	0	0	0.34247	1	2209	2209		8.5933	1.8701	1	62206			33245	12161	19366	19367	40590	40590					0.12405140941973514
PLRKLYAP	8	Unmodified	_PLRKLYAP_					0	0	0			REV__ENSG00000145354|ENST00000273986|CISD2	REV__ENSG00000145354|ENST00000273986|CISD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7801208496094	2	479.297645	956.580737	0.35792	0.00017155	-0.1324	-6.3458E-05	0.22552	0.00010809	479.29759877295464	41.96	0.68972	42.05	41.829	42.519	0.090248					41	24	2	0	0	0	0.34046	1	9192	9192		9.3474	0	1	404090	+		33246	16290	19367	19368	40591	40591					0.10070958410744879
PLRKQEEL	8	Unmodified	_PLRKQEEL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7366943359375	2	506.792924	1011.57129	0.0713	3.6135E-05	-1.0349	-0.0005245	-0.96364	-0.00048837	506.79239350034453	42.213	0.37671	42.213	42.166	42.543	0					15	13	2	0	0	0	0.34092	1	9209	9209		13.508	0	1	390970			33247	692	19368	19369	40592	40592					0.06597145334569632
PLRLEPLSRK	10	Unmodified	_PLRLEPLSRK_					0	0	0			REV__ENST00000609974.1_1_7:155088624-155088729:-|nuORF	REV__ENST00000609974.1_1_7:155088624-155088729:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.5802001953125	3	403.587307	1207.74009	-0.10289	-4.1526E-05	0.1992	8.0394E-05	0.096308	3.8869E-05	403.5872898026043	31.744	0.78754	31.785	31.447	32.234	0.040991					46	27	2	0	0	0	0.37568	1	5923	5923		7.9454	0	1	1300200	+		33248	22675	19369	19370	40593	40593					0.14453046968060335
PLRLLALL	8	Unmodified	_PLRLLALL_					0	0	0		nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;LRP8|p.L926Pfs*37|1|0.1|ENSG00000157193|chr1:53249457-53249458|-/AGAAGAAAAATGG|frameshift_variant;ENSG00000157193|ENST00000306052|LRP8;nc|ENSG00000157193|Q14114-2|LRP8	nc|ENSG00000157193|Q14114-4|LRP8	nc|ENSG00000157193|Q14114-4|LRP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.818115234375	2	454.818213	907.621873	0.092333	4.1995E-05	-0.23066	-0.00010491	-0.13832	-6.2912E-05	454.81806751307107	73.949	0.54975	73.918	73.692	74.241	-0.030663					33	19	2	0	0	0	0.10409	1	18908	18908		59.795	0	1	683010			33249	5288	19370	19371	40594	40594					0.16436719450211967
PLRLPVVPG	9	Unmodified	_PLRLPVVPG_					0	0	0		ENST00000546151.5_1_11:61120480-61124010:-|nuORF;ENST00000540139.5_3_11:61120480-61121493:-|nuORF	ENST00000546151.5_1_11:61120480-61124010:-|nuORF	ENST00000546151.5_1_11:61120480-61124010:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.291015625	2	474.30547	946.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.662	1	73.631	73.131	74.131	-0.030655								0	0	0	0.26258	1	18823	18823		2.3027	0	1				33250	11716	19371	19372	40595	40595					0.12095244927797921
PLRLVLLWVLL	11	Unmodified	_PLRLVLLWVLL_					0	0	0			REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.6357727050781	3	445.635598	1333.88496	0.39246	0.00017489	-0.14833	-6.6102E-05	0.24413	0.00010879	445.6356193784322	33.487	1.2457	33.487	33.31	34.556	0					209	44	5	0	0	0	0.48486	1	6529	6529		0.094841	0.094841	1	11149000	+		33251	16658	19372	19373	40596	40596					0.2313771511521736
PLRLVLLWVLL	11	Unmodified	_PLRLVLLWVLL_					0	0	0			REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.6361083984375	3	445.635598	1333.88496	-0.86388	-0.00038498	0.92515	0.00041228	0.061275	2.7306E-05	445.63626240736966	34.769	1.4846	34.769	34.528	36.012	0					245	53	6	0	0	0	0.48558	2	7155	7155;7203		0	0	1	17152000	+		33252	16658	19372	19373	40597;40598	40597					0.2313771511521736
PLRLVLLWVLL	11	Unmodified	_PLRLVLLWVLL_					0	0	0			REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.63592529296875	3	445.635598	1333.88496	-1.0799	-0.00048125	0.97348	0.00043382	-0.10643	-4.743E-05	445.63636694264284	34.632	1.477	34.707	34.47	35.947	0.075306					242	53	6	0	0	0	0.48558	1	7001	7001		0	0	1	20028000	+		33253	16658	19372	19373	40599	40599					0.2313771511521736
PLRLVLLWVLL	11	Unmodified	_PLRLVLLWVLL_					0	0	0			REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.6357727050781	3	445.635598	1333.88496	0.1186	5.2852E-05	0.32721	0.00014582	0.44581	0.00019867	445.6357708622988	33.343	1.1926	33.41	33.271	34.463	0.066704					200	42	5	0	0	0	0.48558	2	6525	6525;6670		0	0	1	9303900	+		33254	16658	19372	19373	40600;40601	40600					0.2313771511521736
PLRLVLLWVLL	11	Unmodified	_PLRLVLLWVLL_					0	0	0			REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.6358947753906	3	445.635598	1333.88496	-0.48701	-0.00021703	0.50311	0.00022421	0.016107	7.1776E-06	445.63608872642646	34.584	1.5553	34.661	34.444	36	0.077377					261	55	6	0	0	0	0.48558	4	6903	6903;6947;7041;7089		0	0	1	16860000	+		33255	16658	19372	19373	40602;40603;40604;40605	40602					0.2313771511521736
PLRPALLG	8	Unmodified	_PLRPALLG_					0	0	0		ENST00000508930.1_1_5:180661297-180661393:+|nuORF	ENST00000508930.1_1_5:180661297-180661393:+|nuORF	ENST00000508930.1_1_5:180661297-180661393:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.5683288574219	2	418.771263	835.527973	-1.3392	-0.00056081	0.16527	6.9209E-05	-1.1739	-0.00049161	418.7711794065434	34.735	1.0706	34.81	34.383	35.454	0.075306					81	38	3	0	0	0	0.34185	1	6764	6764		10.183	0	1	529180			33256	11354	19373	19374	40606	40606					0.10363000347945217
PLRPPSVL	8	Unmodified	_PLRPPSVL_					0	0	0		ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2684631347656	2	439.776545	877.538538	0.01426	6.271E-06	-1.622	-0.00071331	-1.6077	-0.00070704	439.77597234342136	32.958	0.17047	33.014	32.946	33.117	0.055309					6	5	2	0	0	0	0.43455	1	6348	6348		11.114	0	1	45024			33257	6186	19374	19375	40607	40607					0.09486983002375382
PLRPVRGL	8	Unmodified	_PLRPVRGL_					0	0	0			REV__ENST00000368409.7_1_1:155036226-155036403:+|nuORF	REV__ENST00000368409.7_1_1:155036226-155036403:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.7944641113281	2	454.295436	906.57632	0.25183	0.00011441	-1.5645	-0.00071076	-1.3127	-0.00059636	454.29534378202345	52.964	2.7439	52.964	52.63	55.374	0					251	101	4	0	0	0	0.421	2	12811	12752;12811		15.768	0	1	7242100	+		33258	20338	19375	19376	40608;40609	40609					0.11929493987850037
PLRPVRGL	8	Unmodified	_PLRPVRGL_					0	0	0			REV__ENST00000368409.7_1_1:155036226-155036403:+|nuORF	REV__ENST00000368409.7_1_1:155036226-155036403:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.79443359375	2	454.295436	906.57632	0.38717	0.00017589	-1.6719	-0.00075955	-1.2848	-0.00058366	454.2952786152763	52.879	3.1282	52.93	52.603	55.731	0.050575					232	116	3	0	0	0	0.421	2	12802	12802;12859		15.768	0	1	7766000	+		33259	20338	19375	19376	40610;40611	40610					0.11929493987850037
PLRQRRQLLVR	11	Unmodified	_PLRQRRQLLVR_					0	0	0		ENST00000503078.5_1_5:176943632-176943958:-|nuORF	ENST00000503078.5_1_5:176943632-176943958:-|nuORF	ENST00000503078.5_1_5:176943632-176943958:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7796630859375	3	478.975788	1433.90553	0.056766	2.7189E-05	-1.7464	-0.0008365	-1.6897	-0.00080931	479.3092956492455	42.863	0.62352	42.955	42.499	43.123	0.091362					37	22	3	0	0	0	0.33287	1	9256	9256		1.3296	0.92138	1	176480			33260	11287	19376	19377	40612	40612					0.20593698547577333
PLRRGLRDIHP	11	Unmodified	_PLRRGLRDIHP_					0	0	0		ENST00000556510.1_1_14:24899456-24899822:+|nuORF	ENST00000556510.1_1_14:24899456-24899822:+|nuORF	ENST00000556510.1_1_14:24899456-24899822:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.27581787109375	3	443.933588	1328.77894	0.4299	0.00019085	2.8702	0.0012742	3.3001	0.001465	443.93561815401733	86.995	0.36367	86.995	86.755	87.119	0					18	13	2	0	0	0	0.3322	1	22918	22918		4.7159	0.30977	1	92590			33261	11860	19377	19378	40613	40613					0.12769772322440076
PLRRPGPRWLL	11	Unmodified	_PLRRPGPRWLL_					0	0	0		ENST00000309890.11_1_17:3846802-3850979:-|nuORF	ENST00000309890.11_1_17:3846802-3850979:-|nuORF	ENST00000309890.11_1_17:3846802-3850979:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.27313232421875	3	454.282329	1359.82516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.55	1	61.55	61.05	62.05	0								0	0	0	0.37347	1	15130	15130		3.0723	0.22898	1				33262	9307	19378	19379	40614	40614					0.1596383722455812
PLRRREPR	8	Unmodified	_PLRRREPR_					0	0	0			REV__ENST00000409013.7_1_2:85598662-85617266:+|nuORF	REV__ENST00000409013.7_1_2:85598662-85617266:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8181762695312	2	540.330873	1078.64719	0.67763	0.00036615	-1.0394	-0.0005616	-0.36174	-0.00019546	540.8316608490142	93.231	0.3418	93.231	93.019	93.361	-0.00051117					70	36	3	0	0	0	0.34319	1	24831	24831		5.7604	0	1	133830	+		33263	20749	19379	19380	40615	40615					0.11101587025336812
PLRRRGPAMR	10	Unmodified	_PLRRRGPAMR_					0	0	0			REV__ENST00000371021.4_1_10:99079710-99079944:+|nuORF	REV__ENST00000371021.4_1_10:99079710-99079944:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.56524658203125	3	403.908497	1208.70366	-1.2335	-0.0004982	-1.4839	-0.00059934	-2.7173	-0.0010975	403.90907807155867	34.983	0.16879	35.061	34.947	35.116	0.077377					7	5	2	0	0	0	0.31942	1	6957	6957		1.7423	1.583	1	66191	+		33264	20394	19380	19381	40616	40616					0.10765891590358478
PLRRRRRRKWR	11	Unmodified	_PLRRRRRRKWR_					0	0	0			REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF	REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.9007568359375	4	409.764638	1635.02945	-0.10018	-4.1051E-05	-0.077228	-3.1645E-05	-0.17741	-7.2697E-05	409.76493027006944	43.837	1.0459	43.837	43.362	44.408	0					147	38	6	0	0	0	0.33346	1	9620	9620		0	0	1	1094500	+		33265	20002	19381	19382	40617	40617					0.2373321415841474
PLRRRRRRKWR	11	Unmodified	_PLRRRRRRKWR_					0	0	0			REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF	REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5555114746094	4	409.764638	1635.02945	0.16881	6.9174E-05	-0.47917	-0.00019635	-0.31036	-0.00012717	410.0156697522477	43.643	1.2345	43.721	43.182	44.417	0.077515					147	45	6	0	0	0	0.33347	1	9567	9567		0	0	1	1012700	+		33266	20002	19381	19382	40618	40618					0.2373321415841474
PLRRRRRRKWR	11	Unmodified	_PLRRRRRRKWR_					0	0	0			REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF	REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.55572509765625	4	409.764638	1635.02945	0.14889	6.1011E-05	-0.54018	-0.00022135	-0.39128	-0.00016033	410.0156157768384	43.648	1.1292	43.732	43.268	44.398	0.083992					129	38	5	0	0	0	0.33352	1	9566	9566		0	0	1	1128100	+		33267	20002	19381	19382	40619	40619					0.2373321415841474
PLRRSKRRW	9	Unmodified	_PLRRSKRRW_					0	0	0		ENSG00000124215|ENST00000348616|CDH26;nc|ENSG00000124215|Q8IXH8-1|CDH26	ENSG00000124215|ENST00000348616|CDH26	ENSG00000124215|ENST00000348616|CDH26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.2037353515625	3	418.926657	1253.75814	0.82035	0.00034367	1.8822	0.00078852	2.7026	0.0011322	419.2619404756193	56.475	0.21371	56.455	56.379	56.592	-0.019081					9	7	2	0	0	0	0.25811	1	13574	13574		2.9952	2.9952	1	185800			33268	3144	19382	19383	40620	40620					0.14141226733431722
PLRRVALL	8	Unmodified	_PLRRVALL_					0	0	0			REV__ENST00000565537.1_1_16:2510121-2510671:+|nuORF	REV__ENST00000565537.1_1_16:2510121-2510671:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.27691650390625	2	469.318912	936.62327	0.16955	7.9573E-05	0.19387	9.0988E-05	0.36342	0.00017056	469.3188221101566	39.741	0.503	39.833	39.548	40.051	0.09267					30	17	2	0	0	0	0.34297	1	8440	8440		6.3541	0	1	210320	+		33269	22359	19383	19384	40621	40621					0.15242353538985753
PLRSFLVTL	9	Unmodified	_PLRSFLVTL_					0	0	0		ENST00000396398.7_1_22:42466552-42466684:-|nuORF	ENST00000396398.7_1_22:42466552-42466684:-|nuORF	ENST00000396398.7_1_22:42466552-42466684:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8262939453125	2	523.32386	1044.63317	0.2389	0.00012502	0.43665	0.00022851	0.67555	0.00035353	523.3239947603973	73.63	0.92386	73.63	73.02	73.944	0					67	32	4	0	0	0	0.16283	1	18791	18791		29.082	2.8134	1	1082500			33270	10114	19384	19385	40622	40622					0.11263496753713298
PLRSFLVTL	9	Unmodified	_PLRSFLVTL_					0	0	0		ENST00000396398.7_1_22:42466552-42466684:-|nuORF	ENST00000396398.7_1_22:42466552-42466684:-|nuORF	ENST00000396398.7_1_22:42466552-42466684:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	523.32386	1044.63317	0.33055	0.00017299	0.28272	0.00014795	0.61327	0.00032094	523.3239054144382	73.624	0.86083	73.676	73.17	74.031	0.052361	0.018262	-7.1544E-05	NaN	29.082	63	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1224100			33271	10114	19384	19385							0.11263496753713298
PLRSFLVTL	9	Unmodified	_PLRSFLVTL_					0	0	0		ENST00000396398.7_1_22:42466552-42466684:-|nuORF	ENST00000396398.7_1_22:42466552-42466684:-|nuORF	ENST00000396398.7_1_22:42466552-42466684:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	523.32386	1044.63317	0.39177	0.00020502	0.32219	0.00016861	0.71396	0.00037363	523.3240102410659	73.699	0.81058	73.668	73.1	73.91	-0.030655	0.010034	-3.0232E-05	NaN	29.082	65	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	967150			33272	10114	19384	19385							0.11263496753713298
PLRTPQAV	8	Unmodified	_PLRTPQAV_					0	0	0		ENSG00000179091|ENST00000318911|CYC1	ENSG00000179091|ENST00000318911|CYC1	ENSG00000179091|ENST00000318911|CYC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2555236816406	2	441.263802	880.513051	0.34218	0.00015099	-0.71921	-0.00031736	-0.37703	-0.00016637	441.2635071453066	29.481	0.30868	29.481	29.324	29.633	0					16	10	2	0	0	0	0.34319	1	5232	5232		5.7604	0	1	28871			33273	7101	19385	19386	40623	40623					0.06801508479941276
PLRTSLQL	8	Unmodified	_PLRTSLQL_					0	0	0			REV__ENSG00000257335|ENST00000475668|MGAM	REV__ENSG00000257335|ENST00000475668|MGAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.2845764160156	2	464.284734	926.554916	-0.35148	-0.00016319	-0.0059719	-2.7726E-06	-0.35745	-0.00016596	464.2846558144482	60.259	0.40404	60.259	60.065	60.469	0					31	14	3	0	0	0	0.16948	1	14711	14711		48.346	0	1	753650	+		33274	19261	19386	19387	40624	40624					0.0887006416847953
PLRTSLQL	8	Unmodified	_PLRTSLQL_					0	0	0			REV__ENSG00000257335|ENST00000475668|MGAM	REV__ENSG00000257335|ENST00000475668|MGAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7370910644531	2	464.284734	926.554916	0.010761	4.9964E-06	-0.39643	-0.00018405	-0.38567	-0.00017906	464.2845416524242	60.225	0.46146	60.213	59.968	60.429	-0.011486					27	16	2	0	0	0	0.33293	1	14659	14659		20.454	0	1	640010	+		33275	19261	19386	19387	40625	40625					0.0887006416847953
PLRVPTLLS	9	Unmodified	_PLRVPTLLS_					0	0	0			REV__ENST00000472045.1_1_5:131819645-131819816:-|nuORF	REV__ENST00000472045.1_1_5:131819645-131819816:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7391357421875	2	498.316035	994.617516	0.46012	0.00022929	-0.66482	-0.00033129	-0.2047	-0.000102	498.3156729437874	49.604	0.48566	49.604	49.408	49.894	0					29	17	2	0	0	0	0.25706	1	11381	11381		6.7232	0	1	422900	+		33276	15258	19387	19388	40626	40626					0.11999210236660929
PLRVPTLLS	9	Unmodified	_PLRVPTLLS_					0	0	0			REV__ENST00000472045.1_1_5:131819645-131819816:-|nuORF	REV__ENST00000472045.1_1_5:131819645-131819816:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	498.316035	994.617516	0.35062	0.00017472	-0.76624	-0.00038183	-0.41561	-0.00020711	498.31560735661964	49.645	0.50634	49.69	49.425	49.932	0.044891	0.037507	-4.3063E-05	NaN	15.847	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387390	+		33277	15258	19387	19388							0.11999210236660929
PLRVPTLLS	9	Unmodified	_PLRVPTLLS_					0	0	0			REV__ENST00000472045.1_1_5:131819645-131819816:-|nuORF	REV__ENST00000472045.1_1_5:131819645-131819816:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.316035	994.617516	0.28325	0.00014115	-0.74925	-0.00037336	-0.466	-0.00023221	498.3156175454535	49.643	0.50899	49.664	49.4	49.909	0.020691	0.011065	-2.6134E-05	NaN	15.847	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	425570	+		33278	15258	19387	19388							0.11999210236660929
PLRYRGSI	8	Unmodified	_PLRYRGSI_					0	0	0		ENST00000519921.5_1_8:41467789-41467849:+|nuORF	ENST00000519921.5_1_8:41467789-41467849:+|nuORF	ENST00000519921.5_1_8:41467789-41467849:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7537536621094	2	481.282526	960.550499	-0.052786	-2.5405E-05	-2.3115	-0.0011125	-2.3643	-0.0011379	481.2816190746657	73.669	0.55691	73.669	73.363	73.92	0					26	19	2	0	0	0	0.34218	1	18788	18788		9.3474	0	1	66799			33279	11467	19388	19389	40627	40627					0.06864599745563282
PLRYRLIM	8	Unmodified	_PLRYRLIM_					0	0	0		ENSG00000172289|ENST00000307552|OR10V1	ENSG00000172289|ENST00000307552|OR10V1	ENSG00000172289|ENST00000307552|OR10V1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2507934570312	2	531.318054	1060.62156	0.69267	0.00036803	0.83726	0.00044485	1.5299	0.00081288	531.3186698645051	84.904	1.2853	84.891	84.246	85.531	-0.01284					129	51	3	0	0	0	0.34185	1	22102	22102		10.183	3.8293	1	1059800			33280	6617	19389	19390	40628	40628					0.0936697645872755
PLSCRKQVEML	11	Unmodified	_PLSCRKQVEML_					0	0	0		nc|ENSG00000166669|Q5U623-2|ATF7IP2;ENSG00000166669|ENST00000562102|ATF7IP2	nc|ENSG00000166669|Q5U623-2|ATF7IP2	nc|ENSG00000166669|Q5U623-2|ATF7IP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7801208496094	3	435.233547	1302.67881	0.10988	4.7823E-05	0.767	0.00033383	0.87688	0.00038165	435.23408981271876	29.477	0.58884	29.477	29.244	29.833	0					52	20	4	0	0	0	0.33146	1	5212	5212		6.6235	1.5759	1	254650			33281	6101	19390	19391	40629	40629					0.03958030882131425
PLSEDDSDF	9	Unmodified	_PLSEDDSDF_					0	0	0			REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.8057250976562	2	512.708919	1023.40329	0.35831	0.00018371	-1.4984	-0.00076822	-1.1401	-0.00058451	512.7079234531016	72.634	0.47565	72.605	72.426	72.901	-0.029305					21	16	2	0	0	0	0.25417	1	18495	18495		8.5933	0.68312	1	72608	+		33282	22891	19391	19392	40630	40630					-0.10748006440553581
PLSERLPGPG	10	Unmodified	_PLSERLPGPG_					0	0	0			REV__ENSG00000275342|ENST00000615670|PRAG1	REV__ENSG00000275342|ENST00000615670|PRAG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2695617675781	2	511.785099	1021.55564	0.37169	0.00019023	0.65277	0.00033408	1.0245	0.0005243	511.7853187840832	45.608	0.59499	45.668	45.389	45.984	0.059834					35	20	3	0	0	0	0.3156	1	10146	10146		6.7232	0	1	375750	+		33283	19329	19392	19393	40631	40631					0.04572858817527958
PLSERLTLLAI	11	Unmodified	_PLSERLTLLAI_					0	0	0		nc|ENSG00000178904|Q6ZPD9-2|DPY19L3;ENSG00000178904|ENST00000392250|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	613.3636474609375	2	613.379363	1224.74417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.349	1	89.439	88.939	89.939	0.090569								0	0	0	0.31397	1	23634	23634		16.149	3.1066	1				33284	7082	19393	19394	40632	40632					0.1407909167114667
PLSFGLSPL	9	Unmodified	_PLSFGLSPL_					0	0	0			REV__ENSG00000183067|ENST00000380588|IGSF5	REV__ENSG00000183067|ENST00000380588|IGSF5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7680358886719	2	465.768386	929.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.269	1	74.269	73.769	74.769	0								0	0	0	0.070392	1	19023	19023		54.774	8.7526	1		+		33285	18235	19394	19395	40633	40633					0.054638570456290836
PLSFGLSPL	9	Unmodified	_PLSFGLSPL_					0	0	0			REV__ENSG00000183067|ENST00000380588|IGSF5	REV__ENSG00000183067|ENST00000380588|IGSF5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7774963378906	2	465.768386	929.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.078	1	74.13	73.63	74.63	0.052361								0	0	0	0.12743	1	18957	18957		39.957	5.8549	1		+		33286	18235	19394	19395	40634	40634					0.054638570456290836
PLSFGLSPL	9	Unmodified	_PLSFGLSPL_					0	0	0			REV__ENSG00000183067|ENST00000380588|IGSF5	REV__ENSG00000183067|ENST00000380588|IGSF5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7680969238281	2	465.768386	929.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.192	1	74.244	73.744	74.744	0.052361								0	0	0	0.13597	1	18992	18992		37.974	5.6685	1		+		33287	18235	19394	19395	40635	40635					0.054638570456290836
PLSFGLSPL	9	Unmodified	_PLSFGLSPL_					0	0	0			REV__ENSG00000183067|ENST00000380588|IGSF5	REV__ENSG00000183067|ENST00000380588|IGSF5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7774353027344	2	465.768386	929.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.426	1	74.395	73.895	74.895	-0.030655								0	0	0	0.12743	1	19057	19057		39.957	5.8549	1		+		33288	18235	19394	19395	40636	40636					0.054638570456290836
PLSFKPVTL	9	Unmodified	_PLSFKPVTL_					0	0	0			REV__nc|ENSG00000141441|Q9H706-2|GAREM1	REV__nc|ENSG00000141441|Q9H706-2|GAREM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2908630371094	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.494	1	74.547	74.047	75.047	0.052361								0	0	0	0.22065	1	19085	19085		15.847	5.0233	1		+		33289	16074	19395	19396	40637	40637					0.09544405488099983
PLSFKPVTL	9	Unmodified	_PLSFKPVTL_					0	0	0			REV__nc|ENSG00000141441|Q9H706-2|GAREM1	REV__nc|ENSG00000141441|Q9H706-2|GAREM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2917175292969	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.728	1	74.78	74.28	75.28	0.052361								0	0	0	0.16039	1	19155	19155		32.305	1.6689	1		+		33290	16074	19395	19396	40638	40638					0.09544405488099983
PLSFNSLTLK	10	Unmodified	_PLSFNSLTLK_					0	0	0		ENST00000546328.1_1_12:109577795-109604957:+|nuORF	ENST00000546328.1_1_12:109577795-109604957:+|nuORF	ENST00000546328.1_1_12:109577795-109604957:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8057250976562	2	560.324057	1118.63356	0.94731	0.0005308	-0.85801	-0.00048076	0.089301	5.0038E-05	560.3236074703048	50.506	0.74455	50.551	50.318	51.063	0.044891					65	26	4	0	0	0	0.24105	1	11805	11805		27.629	0	1	1404400			33291	11756	19396	19397	40639	40639					0.07898871682891695
PLSFPRPL	8	Unmodified	_PLSFPRPL_					0	0	0		ENST00000262410.9_2_17:44102558-44102828:+|nuORF	ENST00000262410.9_2_17:44102558-44102828:+|nuORF	ENST00000262410.9_2_17:44102558-44102828:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.8005676269531	2	463.776545	925.538538	0.40874	0.00018956	-0.3699	-0.00017155	0.038835	1.8011E-05	463.776692174389	36.064	0.34633	36.151	35.898	36.244	0.08625					14	12	2	0	0	0	0.3366	1	7265	7265		7.9102	7.9102	1	95462			33292	8985	19397	19398	40640	40640					0.07278983002368022
PLSFSQTN	8	Unmodified	_PLSFSQTN_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.2316589355469	2	447.2218	892.429047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.906	1	70.906	70.406	71.406	0								0	0	0	0.36169	1	17995	17995		9.3474	0	1				33293	899	19398	19399	40641	40641					-0.021470674076113028
PLSHAGPLK	9	Unmodified	_PLSHAGPLK_					0	0	0		ENST00000369827.7_1_1:110217476-110217722:+|nuORF	ENST00000369827.7_1_1:110217476-110217722:+|nuORF	ENST00000369827.7_1_1:110217476-110217722:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.756103515625	2	460.271627	918.528701	0.10366	4.7713E-05	-0.084324	-3.8812E-05	0.019339	8.9013E-06	460.2714276386472	32.768	0.80413	32.823	32.59	33.394	0.055309					46	28	2	0	0	0	0.21389	1	6313	6313		19.257	12.903	1	236420			33294	9785	19399	19400	40642	40642					0.06617794996986959
PLSKKEKK	8	Unmodified	_PLSKKEKK_					0	0	0		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7098083496094	2	479.30821	956.601866	-0.13869	-6.6475E-05	0.59978	0.00028748	0.46109	0.00022101	479.30839647112464	14.189	0.30913	14.189	14.086	14.395	0					16	10	2	0	0	0	0.34294	1	669	669		7.2892	7.2892	1	57383			33295	4930	19400	19401	40643	40643					0.12182923719603878
PLSKQIASL	9	Unmodified	_PLSKQIASL_					0	0	0			REV__ENSG00000146263|ENST00000683635|MMS22L	REV__ENSG00000146263|ENST00000683635|MMS22L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7616882324219	2	478.792392	955.570232	0.1702	8.1491E-05	-0.47097	-0.0002255	-0.30077	-0.00014401	478.79209404899785	26.065	0.85676	26.043	25.524	26.381	-0.022238					49	30	3	0	0	0	0.22061	1	4245	4245		18.146	0	1	174200	+		33296	16339	19401	19402	40644	40644					0.0906693096563913
PLSLAPLL	8	Unmodified	_PLSLAPLL_					0	0	0		ENST00000253727.9_2_19:50880073-50881037:+|nuORF;ENST00000597130.5_3_19:50879767-50881034:+|nuORF	ENST00000253727.9_2_19:50880073-50881037:+|nuORF	ENST00000253727.9_2_19:50880073-50881037:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2678527832031	2	412.268022	822.521491	-0.2881	-0.00011877	-0.7067	-0.00029135	-0.9948	-0.00041012	412.2680149102757	75.96	0.88803	75.96	75.395	76.283	0					57	31	3	0	0	0	0.2705	1	19587	19587		34.187	0	1	521330			33297	8914	19402	19403	40645	40645					0.103130623965626
PLSLAPLL	8	Unmodified	_PLSLAPLL_					0	0	0		ENST00000253727.9_2_19:50880073-50881037:+|nuORF;ENST00000597130.5_3_19:50879767-50881034:+|nuORF	ENST00000253727.9_2_19:50880073-50881037:+|nuORF	ENST00000253727.9_2_19:50880073-50881037:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.26800537109375	2	412.268022	822.521491	0.13118	5.408E-05	-1.3138	-0.00054166	-1.1827	-0.00048758	412.2677423547606	75.921	0.74106	75.974	75.509	76.25	0.053421					57	26	3	0	0	0	0.2705	2	19515	19515;19564		34.187	0	1	470490			33298	8914	19402	19403	40646;40647	40646					0.103130623965626
PLSLAPLL	8	Unmodified	_PLSLAPLL_					0	0	0		ENST00000253727.9_2_19:50880073-50881037:+|nuORF;ENST00000597130.5_3_19:50879767-50881034:+|nuORF	ENST00000253727.9_2_19:50880073-50881037:+|nuORF	ENST00000253727.9_2_19:50880073-50881037:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.26800537109375	2	412.268022	822.521491	0.1613	6.65E-05	-1.0743	-0.00044289	-0.91299	-0.0003764	412.2678126025786	76.033	0.84987	76.001	75.496	76.346	-0.031487					51	30	3	0	0	0	0.2705	1	19576	19576		34.187	0	1	487390			33299	8914	19402	19403	40648	40648					0.103130623965626
PLSLHDSSL	9	Unmodified	_PLSLHDSSL_					0	0	0			REV__nc|ENSG00000180881|Q9BXY5-3|CAPS2	REV__nc|ENSG00000180881|Q9BXY5-3|CAPS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.3082275390625	2	484.756007	967.497461	0.32409	0.00015711	2.8885	0.0014002	3.2126	0.0015573	484.7578378810362	72.554	0.26477	72.554	72.374	72.639	0					11	9	2	0	0	0	0.21905	1	18488	18488		23.148	0	1	59059	+		33300	18121	19403	19404	40649	40649					0.01241177172244079
PLSLIARFSPI	11	Unmodified	_PLSLIARFSPI_					0	0	0		ENSG00000196361|ENST00000359227|ELAVL3	ENSG00000196361|ENST00000359227|ELAVL3	ENSG00000196361|ENST00000359227|ELAVL3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.260009765625	3	405.248291	1212.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.577	1	70.638	70.138	71.138	0.060783								0	0	0	0.32811	1	17888	17888		7.0371	0.40671	1				33301	7852	19404	19405	40650	40650					0.12519126362303723
PLSLICFSYTQ	11	Unmodified	_PLSLICFSYTQ_					0	0	0		ENSG00000128617|ENST00000249389|OPN1SW	ENSG00000128617|ENST00000249389|OPN1SW	ENSG00000128617|ENST00000249389|OPN1SW	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.8074340820312	2	636.320657	1270.62676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.968	1	93.967	93.467	94.467	-0.00051117								0	0	0	0.36137	1	25044	25044		5.7319	0	1				33302	3382	19405	19406	40651	40651					0.0022719074001997797
PLSLPRASLV	10	Unmodified	_PLSLPRASLV_					0	0	0		ENST00000478085.5_1_22:40802939-40803686:+|nuORF	ENST00000478085.5_1_22:40802939-40803686:+|nuORF	ENST00000478085.5_1_22:40802939-40803686:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.305419921875	2	526.826766	1051.63898	0.76815	0.00040468	-1.1312	-0.00059596	-0.36309	-0.00019128	526.8261954537444	54.186	1.0052	54.186	53.806	54.811	0					52	36	2	0	0	0	0.30586	1	12933	12933		9.3831	0	1	366510			33303	10965	19406	19407	40652	40652					0.11522595265364544
PLSLPVSSF	9	Unmodified	_PLSLPVSSF_					0	0	0			REV__nc|ENSG00000186907|Q86UN3-2|RTN4RL2	REV__nc|ENSG00000186907|Q86UN3-2|RTN4RL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2909240722656	2	473.765843	945.517133	0.36361	0.00017226	2.0784	0.00098467	2.442	0.0011569	473.7656623210696	72.582	0.9276	72.553	72.254	73.181	-0.029305					47	32	2	0	0	0	0.23783	1	18437	18437		12.532	0	1	182330	+		33304	18478	19407	19408	40653	40653					0.04219553183008884
PLSLSLSRESP	11	Unmodified	_PLSLSLSRESP_					0	0	0			REV__ENSG00000065989|ENST00000380702|PDE4A	REV__ENSG00000065989|ENST00000380702|PDE4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.3136596679688	2	593.327328	1184.6401	0.50177	0.00029772	0.5962	0.00035374	1.098	0.00065146	593.327838424544	89.578	0.9143	89.577	89.051	89.965	-0.00080872					102	63	2	0	0	0	0.44192	1	23740	23740		5.7319	0	1	154260	+		33305	13673	19408	19409	40654	40654					0.055167648436281524
PLSLVPKKGVI	11	Unmodified	_PLSLVPKKGVI_					0	0	0			REV__ENSG00000124313|ENST00000642864|IQSEC2;REV__nc|ENSG00000124313|Q5JU85-3|IQSEC2	REV__ENSG00000124313|ENST00000642864|IQSEC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7927856445312	2	575.881542	1149.74853	0.31146	0.00017936	-0.17046	-9.8164E-05	0.141	8.12E-05	575.8814983485655	72.273	0.48074	72.273	72.132	72.613	0					27	17	2	0	0	0	0.33324	1	18444	18444		1.1933	1.1933	1	98743	+		33306	15229;22976	19409	19410	40655	40655					0.17964600884693027
PLSLVPKKGVI	11	Unmodified	_PLSLVPKKGVI_					0	0	0			REV__ENSG00000124313|ENST00000642864|IQSEC2;REV__nc|ENSG00000124313|Q5JU85-3|IQSEC2	REV__ENSG00000124313|ENST00000642864|IQSEC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	575.881542	1149.74853	0.52707	0.00030353	-0.3363	-0.00019367	0.19077	0.00010986	575.8814203924302	72.249	0.4292	72.306	72.144	72.573	0.056572	-0.011671	-0.00012582	NaN	0.26902	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140650	+		33307	15229;22976	19409	19410							0.17964600884693027
PLSLVPKKGVI	11	Unmodified	_PLSLVPKKGVI_					0	0	0			REV__ENSG00000124313|ENST00000642864|IQSEC2;REV__nc|ENSG00000124313|Q5JU85-3|IQSEC2	REV__ENSG00000124313|ENST00000642864|IQSEC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	575.881542	1149.74853	0.34809	0.00020046	-0.13042	-7.5109E-05	0.21766	0.00012535	575.8814246736536	72.401	0.37319	72.374	72.171	72.544	-0.027275	0.056366	0.0001113	NaN	0.26902	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109530	+		33308	15229;22976	19409	19410							0.17964600884693027
PLSMCLSL	8	Unmodified	_PLSMCLSL_					0	0	0			REV__ENSG00000162009|ENST00000689027|SSTR5	REV__ENSG00000162009|ENST00000689027|SSTR5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.21319580078125	2	432.2219	862.429246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.598	1	52.598	52.098	53.098	0								0	0	0	0.33625	1	12360	12360		20.871	0	1		+		33309	16961	19410	19411	40656	40656					-0.0074710700362174975
PLSNLSSAL	9	Unmodified	_PLSNLSSAL_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-3|THADA	REV__nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.718994140625	2	451.2531	900.491647	0.1718	7.7527E-05	0.20029	9.038E-05	0.37209	0.00016791	451.25312804439005	59.077	0.61858	59.168	58.928	59.547	0.091305					42	21	3	0	0	0	0.2322	1	14303	14303		20.454	2.3186	1	395010	+		33310	14904	19411	19412	40657	40657					0.03742078660570769
PLSNNFGPHPF	11	Unmodified	_PLSNNFGPHPF_					0	0	0			REV__ENSG00000167757|ENST00000453757|KLK11	REV__ENSG00000167757|ENST00000453757|KLK11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2500915527344	3	409.536612	1225.58801	0.016464	6.7428E-06	-0.68105	-0.00027891	-0.66458	-0.00027217	409.536091510674	30.287	0.44689	30.287	30.141	30.587	0					21	15	2	0	0	0	0.32909	1	5524	5524		10.899	0	1	42859	+		33311	17409	19412	19413	40658	40658					-0.015763537794782678
PLSNSRII	8	Unmodified	_PLSNSRII_					0	0	0			REV__nc|ENSG00000056586|Q9HBD1-6|RC3H2	REV__nc|ENSG00000056586|Q9HBD1-6|RC3H2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2472839355469	2	450.269084	898.523616	0.08319	3.7458E-05	0.56561	0.00025468	0.6488	0.00029213	450.26965367500407	67.571	1.3346	67.555	66.736	68.071	-0.016296					96	46	3	0	0	0	0.34147	1	17066	17066		11.114	0	1	138130	+		33312	13598	19413	19414	40659	40659					0.07029491134380805
PLSPGLLL	8	Unmodified	_PLSPGLLL_					0	0	0		ENSG00000241563|ENST00000377049|CORT	ENSG00000241563|ENST00000377049|CORT	ENSG00000241563|ENST00000377049|CORT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2599792480469	2	405.260197	808.50584	-0.032613	-1.3217E-05	0.16198	6.5643E-05	0.12937	5.2427E-05	405.26013315893414	71.524	2.5373	71.524	70.797	73.335	0					206	91	3	0	0	0	0.10409	4	18032	18032;18182;18279;18380		59.795	0	1	2314400			33313	8534	19414	19415	40660;40661;40662;40663	40660					0.09392775879518922
PLSPGLLL	8	Unmodified	_PLSPGLLL_					0	0	0		ENSG00000241563|ENST00000377049|CORT	ENSG00000241563|ENST00000377049|CORT	ENSG00000241563|ENST00000377049|CORT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2600402832031	2	405.260197	808.50584	-0.083373	-3.3788E-05	0.23964	9.7116E-05	0.15627	6.3328E-05	405.2601608529555	71.47	2.5689	71.526	70.795	73.364	0.056572					203	93	3	0	0	0	0.065483	2	18074	18023;18074		70.865	0	1	2023300			33314	8534	19414	19415	40664;40665	40665					0.09392775879518922
PLSPGLLL	8	Unmodified	_PLSPGLLL_					0	0	0		ENSG00000241563|ENST00000377049|CORT	ENSG00000241563|ENST00000377049|CORT	ENSG00000241563|ENST00000377049|CORT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2601013183594	2	405.260197	808.50584	0.018334	7.43E-06	0.13161	5.3336E-05	0.14994	6.0766E-05	405.26013092988205	71.528	2.5221	71.501	70.771	73.293	-0.027275					211	90	3	0	0	0	0.16192	1	18037	18037		49.669	0	1	2035300			33315	8534	19414	19415	40666	40666					0.09392775879518922
PLSPIHRD	8	Unmodified	_PLSPIHRD_					0	0	0		nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28	nc|ENSG00000042980|Q9UKQ2-2|ADAM28	nc|ENSG00000042980|Q9UKQ2-2|ADAM28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2572326660156	2	467.758884	933.503215	0.31385	0.0001468	-0.043158	-2.0188E-05	0.27069	0.00012662	467.7590613934793	78.69	0.84005	78.69	78.302	79.142	0					57	33	2	0	0	0	0.34092	1	20492	20492		13.508	0	1	337920			33316	617	19415	19416	40667	40667					0.033803204745595394
PLSPIHRD	8	Unmodified	_PLSPIHRD_					0	0	0		nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28	nc|ENSG00000042980|Q9UKQ2-2|ADAM28	nc|ENSG00000042980|Q9UKQ2-2|ADAM28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2572021484375	2	467.758884	933.503215	0.57352	0.00026827	-0.39836	-0.00018634	0.17516	8.1933E-05	467.7589385101238	78.849	0.85547	78.818	78.222	79.078	-0.030434					58	34	2	0	0	0	0.34185	1	20449	20449		5.7604	0	1	299850			33317	617	19415	19416	40668	40668					0.033803204745595394
PLSPIITL	8	Unmodified	_PLSPIITL_					0	0	0		ENSG00000204131|ENST00000633930|NHSL2;nc|ENSG00000204131|Q5HYW2-2|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.2731628417969	2	427.273304	852.532055	-0.129	-5.5117E-05	0.21316	9.1079E-05	0.084168	3.5963E-05	427.2732766168274	69.912	1.0887	69.912	69.485	70.573	0					96	39	3	0	0	0	0.12267	1	17655	17655		56.541	0	1	603560			33318	8199	19416	19417	40669	40669					0.09989045050997447
PLSPIITL	8	Unmodified	_PLSPIITL_					0	0	0		ENSG00000204131|ENST00000633930|NHSL2;nc|ENSG00000204131|Q5HYW2-2|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.27313232421875	2	427.273304	852.532055	-0.16506	-7.0524E-05	0.3406	0.00014553	0.17554	7.5004E-05	427.27328831170286	69.884	1.0924	69.95	69.459	70.552	0.06604					87	38	3	0	0	0	0.082568	1	17690	17690		63.563	0	1	471840			33319	8199	19416	19417	40670	40670					0.09989045050997447
PLSPIITL	8	Unmodified	_PLSPIITL_					0	0	0		ENSG00000204131|ENST00000633930|NHSL2;nc|ENSG00000204131|Q5HYW2-2|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.2733154296875	2	427.273304	852.532055	-0.067869	-2.8999E-05	0.18515	7.9109E-05	0.11728	5.011E-05	427.2732463515178	69.943	1.1048	69.921	69.564	70.668	-0.022087					84	39	3	0	0	0	0.058048	2	17693	17645;17693		74.396	0	1	656030			33320	8199	19416	19417	40671;40672	40672					0.09989045050997447
PLSPIITL	8	Unmodified	_PLSPIITL_					0	0	0		ENSG00000204131|ENST00000633930|NHSL2;nc|ENSG00000204131|Q5HYW2-2|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	427.273304	852.532055	-0.16083	-6.8719E-05	0.39707	0.00016966	0.23624	0.00010094	427.2734888623135	69.56	0.074982	69.538	69.489	69.564	-0.022087	-0.26231	0.00010816	NaN	63.563	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29777			33321	8199	19416	19417							0.09989045050997447
PLSPNQRLF	9	Unmodified	_PLSPNQRLF_					0	0	0			REV__nc|ENSG00000081913|O60346-2|PHLPP1	REV__nc|ENSG00000081913|O60346-2|PHLPP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8140869140625	2	536.300916	1070.58728	0.43156	0.00023144	1.6167	0.00086705	2.0483	0.0010985	536.301564614411	52.504	0.40154	52.555	52.309	52.711	0.050575					23	14	2	0	0	0	0.23783	1	12285	12285		18.135	3.2967	1	228590	+		33322	13911	19417	19418	40673	40673					0.054808515714512396
PLSPPPGF	8	Unmodified	_PLSPPPGF_					0	0	0		ENST00000382361.7_1_7:5645159-5645399:+|nuORF	ENST00000382361.7_1_7:5645159-5645399:+|nuORF	ENST00000382361.7_1_7:5645159-5645399:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.207275390625	2	406.221072	810.42759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.936	1	62.033	61.533	62.533	0.096985								0	0	0	0.35014	1	15242	15242		14.582	0	1				33323	10008	19418	19419	40674	40674					0.01479343294283808
PLSQPPPIL	9	Unmodified	_PLSQPPPIL_					0	0	0		ENST00000531017.5_1_19:50314409-50316363:-|nuORF	ENST00000531017.5_1_19:50314409-50316363:-|nuORF	ENST00000531017.5_1_19:50314409-50316363:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.2958679199219	2	481.289485	960.564418	0.31366	0.00015096	2.6727	0.0012863	2.9864	0.0014373	481.2894795632795	51.193	0.69474	51.239	50.9	51.595	0.046574					78	25	5	0	0	0	0.10059	1	11908	11908		38.176	5.8701	1	1780000			33324	11623	19419	19420	40675	40675					0.08255832453994572
PLSRGRVF	8	Unmodified	_PLSRGRVF_					0	0	0			REV__ENST00000393965.7_1_2:74709990-74710182:-|nuORF	REV__ENST00000393965.7_1_2:74709990-74710182:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7772521972656	2	466.277244	930.539935	-0.054745	-2.5526E-05	3.9621	0.0018474	3.9074	0.0018219	466.2792356590565	73.891	0.18169	73.943	73.796	73.977	0.052368					8	5	2	0	0	0	0.34185	1	18904	18904		5.7604	3.1829	1	180390	+		33325	20614	19420	19421	40676	40676					0.07188617091139804
PLSRGRVF	8	Unmodified	_PLSRGRVF_					0	0	0			REV__ENST00000393965.7_1_2:74709990-74710182:-|nuORF	REV__ENST00000393965.7_1_2:74709990-74710182:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	466.277244	930.539935	0.19804	9.2343E-05	2.3153	0.0010796	2.5134	0.0011719	466.27908041640774	74.138	0.12259	74.107	74.032	74.154	-0.030655	0.081999	-0.0010404	NaN	5.7604	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80666	+		33326	20614	19420	19421							0.07188617091139804
PLSRKSSR	8	Unmodified	_PLSRKSSR_					0	0	0		ENST00000398117.1_1_18:60794470-60795067:-|nuORF	ENST00000398117.1_1_18:60794470-60795067:-|nuORF	ENST00000398117.1_1_18:60794470-60795067:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7774353027344	2	465.777608	929.540663	-0.017051	-7.942E-06	0.04675	2.1775E-05	0.029699	1.3833E-05	465.7775281831673	73.055	2.0365	73.055	72.667	74.703	0					190	71	4	0	0	0	0.4397	1	18927	18927		9.3474	9.3474	1	1962000			33327	10154	19421	19422	40677	40677					0.07307411740180214
PLSRKSSR	8	Unmodified	_PLSRKSSR_					0	0	0		ENST00000398117.1_1_18:60794470-60795067:-|nuORF	ENST00000398117.1_1_18:60794470-60795067:-|nuORF	ENST00000398117.1_1_18:60794470-60795067:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.777587890625	2	465.777608	929.540663	0.069502	3.2372E-05	-1.2182	-0.00056741	-1.1487	-0.00053504	465.7775319258724	71.513	3.7412	71.57	70.875	74.617	0.056572					306	134	4	0	0	0	0.45169	1	18480	18480		5.2307	0.47466	1	2579700			33328	10154	19421	19422	40678	40678					0.07307411740180214
PLSRKSSR	8	Unmodified	_PLSRKSSR_					0	0	0		ENST00000398117.1_1_18:60794470-60795067:-|nuORF	ENST00000398117.1_1_18:60794470-60795067:-|nuORF	ENST00000398117.1_1_18:60794470-60795067:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7776184082031	2	465.777608	929.540663	0.29394	0.00013691	-0.13788	-6.4221E-05	0.15606	7.2688E-05	465.7774408601235	71.615	3.3981	71.588	70.637	74.035	-0.027275					249	122	4	0	0	0	0.45169	2	18435	18435;18481		5.2307	5.2307	1	3172700			33329	10154	19421	19422	40679;40680	40679					0.07307411740180214
PLSRLVHF	8	Unmodified	_PLSRLVHF_					0	0	0			REV__ENSG00000082781|ENST00000296181|ITGB5	REV__ENSG00000082781|ENST00000296181|ITGB5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2642822265625	2	484.787444	967.560336	0.17924	8.6893E-05	-0.89939	-0.00043601	-0.72015	-0.00034912	484.78786405179756	38.16	1.178	38.16	37.587	38.765	0					69	41	2	0	0	0	0.34092	1	7944	7944		13.508	0	1	205730	+		33330	13925	19422	19423	40681	40681					0.07525787750932977
PLSRLVHF	8	Unmodified	_PLSRLVHF_					0	0	0			REV__ENSG00000082781|ENST00000296181|ITGB5	REV__ENSG00000082781|ENST00000296181|ITGB5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.26409912109375	2	484.787444	967.560336	0.26288	0.00012744	-1.5903	-0.00077096	-1.3274	-0.00064352	484.7876465779046	38.021	1.0511	38.119	37.682	38.733	0.097527					64	37	2	0	0	0	0.33245	1	7902	7902		19.439	5.9311	1	180190	+		33331	13925	19422	19423	40682	40682					0.07525787750932977
PLSSADGPKKK	11	Unmodified	_PLSSADGPKKK_					0	0	0			REV__nc|ENSG00000099331|Q13459-2|MYO9B	REV__nc|ENSG00000099331|Q13459-2|MYO9B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.7583618164062	2	564.324588	1126.63462	0.51679	0.00029164	2.3171	0.0013076	2.8339	0.0015992	564.8273143733956	63.915	0.13203	64.008	63.958	64.091	0.092884					5	4	2	0	0	0	0.32736	1	15852	15852		8.1555	1.9497	1	65266	+		33332	14129	19423	19424	40683	40683					0.0763708605179545
PLSSAKQGF	9	Unmodified	_PLSSAKQGF_					0	0	0			REV__ENSG00000146038|ENST00000378454|DCDC2	REV__ENSG00000146038|ENST00000378454|DCDC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7533264160156	2	467.753267	933.491981	0.1473	6.8902E-05	0.0099591	4.6584E-06	0.15726	7.3561E-05	467.7532375448172	49.1	0.65871	49.1	48.883	49.542	0					36	23	2	0	0	0	0.27532	1	11301	11301		12.532	12.532	1	360240	+		33333	16322	19424	19425	40684	40684					0.022574983804247495
PLSSLLAQFF	10	Unmodified	_PLSSLLAQFF_					0	0	0		ENSG00000149016|ENST00000476907|TUT1	ENSG00000149016|ENST00000476907|TUT1	ENSG00000149016|ENST00000476907|TUT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.8134765625	2	561.813325	1121.6121	0.55317	0.00031078	-0.86765	-0.00048746	-0.31447	-0.00017667	561.8129867419693	85.16	0.54091	85.241	84.998	85.539	0.080887					38	19	3	0	0	0	0.34325	1	22364	22364		13.906	1.6654	1	250390			33334	4839	19425	19426	40685	40685					0.05615486654187407
PLSSPAPSTF	10	Unmodified	_PLSSPAPSTF_					0	0	0		ENST00000601114.1_1_19:51379578-51380013:+|nuORF	ENST00000601114.1_1_19:51379578-51380013:+|nuORF	ENST00000601114.1_1_19:51379578-51380013:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2767333984375	2	502.258382	1002.50221	0.41727	0.00020958	-0.0011767	-5.9102E-07	0.41609	0.00020899	502.25860304918154	68.85	0.25171	68.85	68.786	69.037	0					11	8	2	0	0	0	0.26638	1	17382	17382		30.637	6.616	1	144620			33335	12256	19426	19427	40686	40686					0.0010606131500026095
PLSSPGGHSK	10	Unmodified	_PLSSPGGHSK_					0	0	0		ENST00000409655.5_2_11:289177-290766:+|nuORF	ENST00000409655.5_2_11:289177-290766:+|nuORF	ENST00000409655.5_2_11:289177-290766:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2642822265625	2	483.753798	965.493044	0.27442	0.00013275	0.15982	7.7314E-05	0.43424	0.00021007	483.7538664418555	38.018	0.639	38.018	37.795	38.434	0					38	22	3	0	0	0	0.31629	1	7944	7944		10.074	4.3421	1	363790			33336	10254	19427	19428	40687	40687					0.008917127493418775
PLSSPGGHSK	10	Unmodified	_PLSSPGGHSK_					0	0	0		ENST00000409655.5_2_11:289177-290766:+|nuORF	ENST00000409655.5_2_11:289177-290766:+|nuORF	ENST00000409655.5_2_11:289177-290766:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	483.753798	965.493044	0.30024	0.00014524	0.052689	2.5488E-05	0.35292	0.00017073	483.7537795485619	37.907	0.62747	37.998	37.772	38.399	0.090881	-0.0097998	-6.1237E-05	NaN	10.074	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299760			33337	10254	19427	19428							0.008917127493418775
PLSSPPPPLL	10	Unmodified	_PLSSPPPPLL_					0	0	0			REV__ENSG00000132635|ENST00000360652|PCED1A	REV__ENSG00000132635|ENST00000360652|PCED1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.30230712890625	2	509.302593	1016.59063	0.45743	0.00023297	-0.41146	-0.00020956	0.045966	2.3411E-05	509.3021760001994	57.2	0.46766	57.2	56.908	57.376	0					31	17	2	0	0	0	0.24715	1	13805	13805		26.884	5.137	1	396100	+		33338	15584	19428	19429	40688	40688					0.08300101625468415
PLSSPPPPLL	10	Unmodified	_PLSSPPPPLL_					0	0	0			REV__ENSG00000132635|ENST00000360652|PCED1A	REV__ENSG00000132635|ENST00000360652|PCED1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7533264160156	2	509.302593	1016.59063	0.45743	0.00023297	-0.41146	-0.00020956	0.045966	2.3411E-05	509.3021760001994	57.2	0.46766	57.2	56.908	57.376	0					31	17	2	0	0	0	0.2504	1	13813	13813		34.102	7.2188	1	396100	+		33339	15584	19428	19429	40689	40689					0.08300101625468415
PLSSPRSWKVF	11	Unmodified	_PLSSPRSWKVF_					0	0	0		ENST00000587065.2_2_19:34895769-34912519:+|nuORF	ENST00000587065.2_2_19:34895769-34912519:+|nuORF	ENST00000587065.2_2_19:34895769-34912519:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7796936035156	3	435.243429	1302.70846	-0.96719	-0.00042096	-3.5073	-0.0015265	-4.4745	-0.0019475	435.2419413403185	35.157	0.4971	35.234	34.893	35.39	0.077377					24	17	2	0	0	0	0.33064	1	7032	7032		5.0475	2.9615	1	85882			33340	12127	19429	19430	40690	40690					0.06921054214103606
PLSSVRTKP	9	Unmodified	_PLSSVRTKP_					0	0	0			REV__ENSG00000198173|ENST00000358047|FAM47C	REV__ENSG00000198173|ENST00000358047|FAM47C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.7957458496094	2	492.795466	983.57638	0.5246	0.00025852	-0.58011	-0.00028588	-0.055512	-2.7356E-05	492.79525066420433	20.067	2.2041	20.011	19.337	21.542	-0.055693					119	78	3	0	0	0	0.30064	1	2421	2421		8.7454	0	1	271650	+		33341	18806	19430	19431	40691	40691					0.08393449197171776
PLSSVVRSI	9	Unmodified	_PLSSVVRSI_					0	0	0		ENST00000524576.5_1_11:66203480-66233392:-|nuORF;nc|ENSG00000174547|Q9Y3B7-2|MRPL11;nc|ENSG00000174547|Q9Y3B7-3|MRPL11;ENSG00000174547|ENST00000310999|MRPL11	ENST00000524576.5_1_11:66203480-66233392:-|nuORF	ENST00000524576.5_1_11:66203480-66233392:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.29010009765625	2	479.290017	956.565481	0.53258	0.00025526	-0.065976	-3.1621E-05	0.4666	0.00022364	479.2899178707895	45.69	0.52192	45.69	45.452	45.974	0					32	18	2	0	0	0	0.15219	1	10269	10269		30.637	3.0077	1	894100			33342	6802	19431	19432	40692	40692					0.0854604682289164
PLSTLLIPERL	11	Unmodified	_PLSTLLIPERL_					0	0	0			REV__ENSG00000155085|ENST00000424296|AK9	REV__ENSG00000155085|ENST00000424296|AK9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.38720703125	2	626.387188	1250.75982	0.12683	7.9445E-05	1.144	0.0007166	1.2708	0.00079604	626.8887272297998	103.77	0.97324	103.77	103.62	104.59	-0.0011063					208	133	2	0	0	0	0.46277	1	27573	27573		2.9952	0	1	19004000	+		33343	16689	19432	19433	40693	40693					0.14447378188197035
PLSTYVINF	9	Unmodified	_PLSTYVINF_					0	0	0			REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF	REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3025512695312	2	527.2844	1052.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.745	1	83.745	83.245	84.245	0								0	0	0	0.23091	1	21921	21921		12.532	3.1841	1		+		33344	14392	19433	19434	40694	40694					0.030072247287534992
PLSVKRLSL	9	Unmodified	_PLSVKRLSL_					0	0	0		PIF1|p.P194S|1|0.3|ENSG00000140451|chr15:64822589-64822589|G/A|missense_variant	PIF1|p.P194S|1|0.3|ENSG00000140451|chr15:64822589-64822589|G/A|missense_variant	PIF1|p.P194S|1|0.3|ENSG00000140451|chr15:64822589-64822589|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2579650878906	2	506.829309	1011.64407	0.31917	0.00016177	-0.899	-0.00045564	-0.57982	-0.00029387	506.82890254034237	31.807	0.53486	31.807	31.61	32.145	0					31	18	3	0	0	0	0.22061	1	5969	5969		18.146	0	1	395680			33345	13046	19434	19435	40695	40695					0.1387089912798274
PLSVKRLSL	9	Unmodified	_PLSVKRLSL_					0	0	0		PIF1|p.P194S|1|0.3|ENSG00000140451|chr15:64822589-64822589|G/A|missense_variant	PIF1|p.P194S|1|0.3|ENSG00000140451|chr15:64822589-64822589|G/A|missense_variant	PIF1|p.P194S|1|0.3|ENSG00000140451|chr15:64822589-64822589|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2579345703125	2	506.829309	1011.64407	0.34379	0.00017424	-0.58036	-0.00029415	-0.23657	-0.0001199	506.8290190485462	31.794	0.54434	31.836	31.624	32.169	0.042364					25	18	2	0	0	0	0.21389	1	5964	5964		13.906	2.2658	1	548140			33346	13046	19434	19435	40696	40696					0.1387089912798274
PLSVPHTT	8	Unmodified	_PLSVPHTT_					0	0	0		ENST00000285093.14_1_18:47329204-47339927:-|nuORF	ENST00000285093.14_1_18:47329204-47339927:-|nuORF	ENST00000285093.14_1_18:47329204-47339927:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.24578857421875	2	426.23471	850.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.129	1	77.129	76.629	77.629	0								0	0	0	0.35985	1	19893	19893		10.183	2.8942	1				33347	9139	19435	19436	40697	40697					0.023658268346594014
PLSVPLGSV	9	Unmodified	_PLSVPLGSV_					0	0	0			REV__ADCY7|p.L774Rfs*22|1|0.3|ENSG00000121281|chr16:50310847-50310847|T/-|frameshift_variant	REV__ADCY7|p.L774Rfs*22|1|0.3|ENSG00000121281|chr16:50310847-50310847|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2523498535156	2	434.760561	867.506569	-0.015405	-6.6977E-06	-0.45489	-0.00019777	-0.4703	-0.00020447	434.7604949713238	71.219	0.94349	71.279	70.928	71.872	0.060783					59	33	3	0	0	0	0.17611	1	18010	18010		34.102	9.4286	1	1219600	+		33348	13081	19436	19437	40698	40698					0.06751570528570028
PLSVSIKQLLL	11	Unmodified	_PLSVSIKQLLL_					0	0	0			REV__nc|ENSG00000259527|Q96N35|LINC00052	REV__nc|ENSG00000259527|Q96N35|LINC00052	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.25225830078125	3	404.26383	1209.76966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.919	1	62.919	62.419	63.419	0								0	0	0	0.36449	1	15552	15552		5.0475	0	1		+		33349	23226	19437	19438	40699	40699					0.1731656619356272
PLTDLLLTV	9	Unmodified	_PLTDLLLTV_					0	0	0			REV__ENSG00000196557|ENST00000348261|CACNA1H;REV__ENSG00000006283|ENST00000359106|CACNA1G;REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__ENSG00000006283|ENST00000359106|CACNA1G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.80224609375	2	492.802426	983.590298	0.42899	0.0002114	-0.58847	-0.00029	-0.15948	-7.8595E-05	492.80201042442883	82.538	1.2427	82.611	82.215	83.458	0.073097					117	48	4	0	0	0	0.044952	1	21489	21489		54.774	0	1	1882100	+		33350	18661;13357;23149	19438	19439	40700	40700					0.09784681905614434
PLTFRDVVI	9	Unmodified	_PLTFRDVVI_					0	0	0		ZNF738|p.E88Gfs*21|1|0.11|ENSG00000172687|chr19:21375907-21375908|-/GGGTGTGGCTACCATACTGTGTCTCTTCATATTCC|frameshift_variant;nc|ENSG00000172687|Q8NE65-2|ZNF738;ENSG00000172687|ENST00000683779|ZNF738	ZNF738|p.E88Gfs*21|1|0.11|ENSG00000172687|chr19:21375907-21375908|-/GGGTGTGGCTACCATACTGTGTCTCTTCATATTCC|frameshift_variant	ZNF738|p.E88Gfs*21|1|0.11|ENSG00000172687|chr19:21375907-21375908|-/GGGTGTGGCTACCATACTGTGTCTCTTCATATTCC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3031005859375	2	530.313492	1058.61243	0.45321	0.00024034	-0.033822	-1.7936E-05	0.41939	0.00022241	530.3134420538606	63.055	0.7888	63.047	62.646	63.435	-0.0085564					68	28	4	0	0	0	0.24581	1	15649	15649		16.942	6.1184	1	816500			33351	6655	19439	19440	40701	40701					0.08546906374044738
PLTGLCLWRGL	11	Unmodified	_PLTGLCLWRGL_					0	0	0			REV__nc|ENSG00000185271|A6NCF5|KLHL33	REV__nc|ENSG00000185271|A6NCF5|KLHL33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.8880615234375	3	410.233876	1227.6798	-0.021052	-8.6361E-06	-0.86437	-0.0003546	-0.88542	-0.00036323	410.2332545883127	24.478	0.65252	24.439	23.993	24.646	-0.038927					45	22	3	0	0	0	0.33296	1	3680	3680		1.2148	0.4383	1	56702	+		33352	18368	19440	19441	40702	40702					0.0750661331333049
PLTGLCLWRGL	11	Unmodified	_PLTGLCLWRGL_					0	0	0			REV__nc|ENSG00000185271|A6NCF5|KLHL33	REV__nc|ENSG00000185271|A6NCF5|KLHL33	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	410.233876	1227.6798	-0.13835	-5.6757E-05	-0.51391	-0.00021082	-0.65226	-0.00026758	410.2335652097048	24.257	0.6597	24.257	23.857	24.517	0	-0.10824	8.4287E-05	NaN	1.2148	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67740	+		33353	18368	19440	19441							0.0750661331333049
PLTGLCLWRGL	11	Unmodified	_PLTGLCLWRGL_					0	0	0			REV__nc|ENSG00000185271|A6NCF5|KLHL33	REV__nc|ENSG00000185271|A6NCF5|KLHL33	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	410.233876	1227.6798	0.12452	5.1083E-05	-0.48007	-0.00019694	-0.35555	-0.00014586	410.23355908921945	24.473	0.64705	24.4	23.997	24.645	-0.072559	0.034644	0.00012593	NaN	1.2148	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80015	+		33354	18368	19440	19441							0.0750661331333049
PLTGLEAPLL	10	Unmodified	_PLTGLEAPLL_					0	0	0		ENSG00000170561|ENST00000302057|IRX2	ENSG00000170561|ENST00000302057|IRX2	ENSG00000170561|ENST00000302057|IRX2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.315673828125	2	512.307875	1022.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.409	1	85.49	84.99	85.99	0.080887								0	0	0	0.34755	1	22426	22426		15.847	0	1				33355	6464	19441	19442	40703	40703					0.09080084279889888
PLTIITTIT	9	Unmodified	_PLTIITTIT_					0	0	0		ENST00000326648.4_1_15:64974088-64974415:+|nuORF	ENST00000326648.4_1_15:64974088-64974415:+|nuORF	ENST00000326648.4_1_15:64974088-64974415:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.79217529296875	2	486.802426	971.590298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.841	1	87.93	87.43	88.43	0.089195								0	0	0	0.24715	1	23172	23172		7.2892	0	1				33356	9416	19442	19443	40704	40704					0.10336681905596379
PLTIVLDL	8	Unmodified	_PLTIVLDL_					0	0	0		ENST00000558657.1_1_15:50087131-50087983:+|nuORF	ENST00000558657.1_1_15:50087131-50087983:+|nuORF	ENST00000558657.1_1_15:50087131-50087983:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.9327087402344	2	442.278586	882.54262	0.30902	0.00013667	0.081427	3.6013E-05	0.39045	0.00017269	442.27863930874946	87.638	0.49031	87.632	87.421	87.912	-0.0056229					32	27	2	0	0	0	0.29855	1	23112	23112		32.117	3.9437	1	81963			33357	11878	19443	19444	40705	40705					0.09665027705409557
PLTIVLDL	8	Unmodified	_PLTIVLDL_					0	0	0		ENST00000558657.1_1_15:50087131-50087983:+|nuORF	ENST00000558657.1_1_15:50087131-50087983:+|nuORF	ENST00000558657.1_1_15:50087131-50087983:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	442.278586	882.54262	0.35004	0.00015482	0.51995	0.00022996	0.86999	0.00038478	442.27880989184536	87.818	0.57922	87.818	87.398	87.977	0	0.092946	9.5573E-05	NaN	32.117	35	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55206			33358	11878	19443	19444							0.09665027705409557
PLTLGTALTPL	11	Unmodified	_PLTLGTALTPL_					0	0	0		ENST00000528563.5_1_19:46807167-46825077:+|nuORF	ENST00000528563.5_1_19:46807167-46825077:+|nuORF	ENST00000528563.5_1_19:46807167-46825077:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7875366210938	2	548.834257	1095.65396	0.49562	0.00027201	-2.3821	-0.0013074	-1.8864	-0.0010353	548.8326937373567	72.309	0.45786	72.309	72.076	72.534	0					20	16	2	0	0	0	0.3259	1	18477	18477		9.3831	0	1	90495			33359	11585	19444	19445	40706	40706					0.10996042342708279
PLTLHLPL	8	Unmodified	_PLTLHLPL_					0	0	0			REV__ENSG00000010610|ENST00000011653|CD4	REV__ENSG00000010610|ENST00000011653|CD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2779846191406	2	452.286746	902.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.868	1	71.868	71.368	72.368	0								0	0	0	0.35779	1	18291	18291		11.114	0	1		+		33360	13416	19445	19446	40707	40707					0.10376153662184606
PLTLHLPL	8	Unmodified	_PLTLHLPL_					0	0	0			REV__ENSG00000010610|ENST00000011653|CD4	REV__ENSG00000010610|ENST00000011653|CD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2779541015625	2	452.286746	902.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.964	1	71.936	71.436	72.436	-0.027275								0	0	0	0.35779	1	18307	18307		11.114	0	1		+		33361	13416	19445	19446	40708	40708					0.10376153662184606
PLTLSTFTM	9	Unmodified	_PLTLSTFTM_					0	0	0			REV__nc|ENSG00000167703|Q8N370-2|SLC43A2	REV__nc|ENSG00000167703|Q8N370-2|SLC43A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.28704833984375	2	505.764986	1009.51542	-0.11828	-5.9823E-05	1.6453	0.00083216	1.5271	0.00077233	505.7658285813053	12.75	0.41639	12.682	12.548	12.965	-0.067496					22	13	3	0	0	0	0.25526	1	239	239		7.9102	1.187	1	386390	+		33362	17405	19446	19447	40709	40709					0.011041761027286157
PLTQRKEI	8	Unmodified	_PLTQRKEI_					0	0	0		ENST00000224756.12_1_10:86230212-86274020:+|nuORF;ENSG00000107771|ENST00000372088|CCSER2	ENST00000224756.12_1_10:86230212-86274020:+|nuORF	ENST00000224756.12_1_10:86230212-86274020:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2691955566406	2	492.795466	983.57638	0.21427	0.00010559	-0.78091	-0.00038483	-0.56664	-0.00027924	492.7952056515348	39.961	0.56322	39.961	39.695	40.259	0					44	19	3	0	0	0	0.30503	1	8513	8513		16.942	0.37642	1	341520			33363	2145	19447	19448	40710	40710					0.08393449197183145
PLTQRKEI	8	Unmodified	_PLTQRKEI_					0	0	0		ENST00000224756.12_1_10:86230212-86274020:+|nuORF;ENSG00000107771|ENST00000372088|CCSER2	ENST00000224756.12_1_10:86230212-86274020:+|nuORF	ENST00000224756.12_1_10:86230212-86274020:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	492.795466	983.57638	0.611	0.0003011	-5.2921	-0.0026079	-4.6811	-0.0023068	492.79487711549643	40.19	0.08522	40.282	40.228	40.313	0.09267	0.16078	-0.0044364	NaN	16.942	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34978			33364	2145	19447	19448							0.08393449197183145
PLTRKPIL	8	Unmodified	_PLTRKPIL_					0	0	0		ENSG00000139668|ENST00000298125|WDFY2	ENSG00000139668|ENST00000298125|WDFY2	ENSG00000139668|ENST00000298125|WDFY2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.75537109375	2	469.313295	936.612037	-0.10664	-5.0046E-05	0.51522	0.0002418	0.40858	0.00019175	469.31351877124223	65.351	0.53401	65.351	65.1	65.634	0					40	18	3	0	0	0	0.3366	1	16331	16331		18.135	1.1927	1	396270			33365	4256	19448	19449	40711	40711					0.14119531444839595
PLTRKPIL	8	Unmodified	_PLTRKPIL_					0	0	0		ENSG00000139668|ENST00000298125|WDFY2	ENSG00000139668|ENST00000298125|WDFY2	ENSG00000139668|ENST00000298125|WDFY2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.75555419921875	2	469.313295	936.612037	-0.33524	-0.00015733	0.81867	0.00038421	0.48343	0.00022688	469.3136291918408	65.263	0.46557	65.352	65.11	65.576	0.088882					35	16	3	0	0	0	0.3366	1	16282	16282		18.135	4.6271	1	317740			33366	4256	19448	19449	40712	40712					0.14119531444839595
PLTRKVPFF	9	Unmodified	_PLTRKVPFF_					0	0	0		nc|ENSG00000163421|Q9HC23-2|PROK2	nc|ENSG00000163421|Q9HC23-2|PROK2	nc|ENSG00000163421|Q9HC23-2|PROK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2980346679688	2	552.831852	1103.64915	0.39084	0.00021607	-2.1565	-0.0011922	-1.7657	-0.00097612	552.8302457860549	50.061	0.11301	50.061	50.025	50.138	0					5	3	2	0	0	0	0.25417	1	11604	11604		8.5933	1.304	1	109720			33367	12796	19449	19450	40713	40713					0.10147202990606274
PLTSSSAKL	9	Unmodified	_PLTSSSAKL_					0	0	0		nc|ENSG00000169696|Q9BZE9-4|ASPSCR1;nc|ENSG00000169696|Q9BZE9-3|ASPSCR1;ENSG00000169696|ENST00000306739|ASPSCR1;nc|ENSG00000169696|Q9BZE9-2|ASPSCR1	nc|ENSG00000169696|Q9BZE9-4|ASPSCR1	nc|ENSG00000169696|Q9BZE9-4|ASPSCR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2776794433594	2	452.260925	902.507297	0.097212	4.3965E-05	-3.379	-0.0015282	-3.2818	-0.0014842	452.2596518576172	69.894	1.0204	69.96	69.312	70.332	0.066048					41	35	2	0	0	0	0.24913	1	17724	17724		7.9102	0	1	76025			33368	6377	19450	19451	40714	40714					0.052143651776077604
PLTVGHVL	8	Unmodified	_PLTVGHVL_					0	0	0			REV__nc|ENSG00000103546|P23975-3|SLC6A2	REV__nc|ENSG00000103546|P23975-3|SLC6A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.2373046875	2	418.255446	834.496338	0.25427	0.00010635	-1.5674	-0.00065556	-1.3131	-0.00054921	418.25462436300387	47.278	0.21545	47.278	47.137	47.352	0					12	7	2	0	0	0	0.29134	1	10729	10729		34.187	2.0704	1	235070	+		33369	14380	19451	19452	40715	40715					0.0724700759398047
PLTYMIIS	8	Unmodified	_PLTYMIIS_					0	0	0		nc|ENSG00000088766|Q9UJA2-2|CRLS1;ENSG00000088766|ENST00000378863|CRLS1	nc|ENSG00000088766|Q9UJA2-2|CRLS1	nc|ENSG00000088766|Q9UJA2-2|CRLS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.9712219238281	2	469.256797	936.499041	0.28127	0.00013199	2.7385	0.001285	3.0197	0.001417	469.25796267428075	43.356	0.46714	43.44	43.268	43.736	0.083996					25	16	2	0	0	0	0.3366	1	9492	9492		12.532	0	1	261270			33370	1328	19452	19453	40716	40716					0.028250949366338318
PLVAITPFDF	10	Unmodified	_PLVAITPFDF_					0	0	0		nc|ENSG00000112339|Q9Y450-2|HBS1L	nc|ENSG00000112339|Q9Y450-2|HBS1L	nc|ENSG00000112339|Q9Y450-2|HBS1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.3065185546875	2	560.307875	1118.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.37	1	88.367	87.867	88.867	-0.0028381								0	0	0	0.36922	1	23328	23328		6.7232	2.3939	1				33371	12656	19453	19454	40717	40717					0.046640842798979065
PLVAITPFDF	10	Unmodified	_PLVAITPFDF_					0	0	0		nc|ENSG00000112339|Q9Y450-2|HBS1L	nc|ENSG00000112339|Q9Y450-2|HBS1L	nc|ENSG00000112339|Q9Y450-2|HBS1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.306640625	2	560.307875	1118.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.796	1	96.791	96.291	97.291	-0.0055466								0	0	0	0.36922	1	25895	25895		6.7232	0.96273	1				33372	12656	19453	19454	40718	40718					0.046640842798979065
PLVDELPV	8	Unmodified	_PLVDELPV_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2658996582031	2	441.252569	880.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.178	1	66.178	65.678	66.678	0								0	0	0	0.35779	1	16550	16550		11.114	0	1				33373	591	19454	19455	40719	40719					0.045558642916603276
PLVDELPV	8	Unmodified	_PLVDELPV_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.26580810546875	2	441.252569	880.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.338	1	66.338	65.838	66.838	0								0	0	0	0.35779	1	16598	16598		11.114	0	1				33374	591	19454	19455	40720	40720					0.045558642916603276
PLVDELPV	8	Unmodified	_PLVDELPV_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.265869140625	2	441.252569	880.490584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.39	1	66.474	65.974	66.974	0.083832								0	0	0	0.35779	1	16607	16607		11.114	0	1				33375	591	19454	19455	40721	40721					0.045558642916603276
PLVEVVPWS	9	Unmodified	_PLVEVVPWS_					0	0	0			REV__ENST00000250916.5_1_19:1853310-1853532:-|nuORF	REV__ENST00000250916.5_1_19:1853310-1853532:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.80908203125	2	513.286943	1024.55933	0.058487	3.0021E-05	0.58888	0.00030226	0.64737	0.00033229	513.2848062799212	43.02	0.080315	43.111	43.043	43.123	0.091362					4	2	2	0	0	0	0.26879	1	9406	9406		13.508	0	1	44893	+		33376	19520	19455	19456	40722	40722					0.04803528591378381
PLVFAPGVPV	10	Unmodified	_PLVFAPGVPV_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;ENST00000574268.1_1_17:4710512-4711565:+|nuORF;nc|ENSG00000129219|O14939-3|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.31011962890625	2	498.299853	994.585153	0.32675	0.00016282	-0.060294	-3.0045E-05	0.26645	0.00013277	498.29994776332217	93.572	0.78339	93.659	93.201	93.984	0.08667					100	64	3	0	0	0	0.39536	2	24921	24921;24963		4.3292	0.38484	1	213460			33377	3416	19456	19457	40723;40724	40723					0.08764422833655772
PLVFAPGVPV	10	Unmodified	_PLVFAPGVPV_					0	0	0		nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;ENST00000574268.1_1_17:4710512-4711565:+|nuORF;nc|ENSG00000129219|O14939-3|PLD2	nc|ENSG00000129219|O14939-4|PLD2	nc|ENSG00000129219|O14939-4|PLD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.3099060058594	2	498.299853	994.585153	0.46979	0.00023409	0.075562	3.7652E-05	0.54535	0.00027175	498.3001281863765	93.584	0.43286	93.584	93.476	93.908	-0.00051117					58	32	2	0	0	0	0.37587	2	24916	24916;24990		7.9102	3.9658	1	171560			33378	3416	19456	19457	40725;40726	40725					0.08764422833655772
PLVFSVDGLL	10	Unmodified	_PLVFSVDGLL_					0	0	0		nc|ENSG00000204396|Q9Y334-2|VWA7;ENSG00000204396|ENST00000375688|VWA7	nc|ENSG00000204396|Q9Y334-2|VWA7	nc|ENSG00000204396|Q9Y334-2|VWA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7890625	2	530.307875	1058.6012	0.58655	0.00031105	-1.1998	-0.00063626	-0.61325	-0.00032521	530.3068137358724	72.582	1.4197	72.582	72.241	73.661	0					96	51	3	0	0	0	0.30079	1	18696	18696		14.838	0	1	734620			33379	8224	19457	19458	40727	40727					0.07424084279909948
PLVGRLLSL	9	Unmodified	_PLVGRLLSL_					0	0	0		ENST00000303577.6_1_2:70315818-70315902:+|nuORF	ENST00000303577.6_1_2:70315818-70315902:+|nuORF	ENST00000303577.6_1_2:70315818-70315902:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2661437988281	2	484.318577	966.622602	0.34813	0.00016861	-0.4251	-0.00020588	-0.076969	-3.7277E-05	484.3183486271552	66.497	0.69772	66.497	66.183	66.881	0					69	24	4	0	0	0	0.14961	1	16661	16661		41.84	5.7126	1	720790			33380	9251	19458	19459	40728	40728					0.13795514099274442
PLVGRLLSL	9	Unmodified	_PLVGRLLSL_					0	0	0		ENST00000303577.6_1_2:70315818-70315902:+|nuORF	ENST00000303577.6_1_2:70315818-70315902:+|nuORF	ENST00000303577.6_1_2:70315818-70315902:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.2660827636719	2	484.318577	966.622602	0.23037	0.00011157	-0.27818	-0.00013473	-0.047817	-2.3159E-05	484.31835765339196	66.533	0.64761	66.519	66.222	66.869	-0.013596					70	23	4	0	0	0	0.1939	1	16642	16642		30.637	1.555	1	506690			33381	9251	19458	19459	40729	40729					0.13795514099274442
PLVGVQALL	9	Unmodified	_PLVGVQALL_					0	0	0		ZNF283|p.G399Nfs*190|1|0.06|ENSG00000167637|chr19:43847794-43847795|-/CAATA|frameshift_variant	ZNF283|p.G399Nfs*190|1|0.06|ENSG00000167637|chr19:43847794-43847795|-/CAATA|frameshift_variant	ZNF283|p.G399Nfs*190|1|0.06|ENSG00000167637|chr19:43847794-43847795|-/CAATA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2772216796875	2	455.292028	908.569503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.569	1	78.569	78.069	79.069	0								0	0	0	0.24311	1	20334	20334		8.5933	0.68312	1				33382	23417	19459	19460	40730	40730					0.11156136316617449
PLVHHPAS	8	Unmodified	_PLVHHPAS_					0	0	0			REV__ENST00000361490.8_1_10:100184114-100185647:-|nuORF	REV__ENST00000361490.8_1_10:100184114-100185647:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.58001708984375	2	429.235045	856.455536	-0.1986	-8.5245E-05	1.7418	0.00074763	1.5432	0.00066239	429.2355341089075	57.394	0.15997	57.377	57.337	57.497	-0.0172					8	5	2	0	0	0	0.34319	1	13845	13845		5.7604	0	1	83384	+		33383	20282	19460	19461	40731	40731					0.02156666274379404
PLVHLAYAL	9	Unmodified	_PLVHLAYAL_					0	0	0			REV__ENSG00000138075|ENST00000405322|ABCG5	REV__ENSG00000138075|ENST00000405322|ABCG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2868957519531	2	498.797478	995.580402	0.32934	0.00016427	-3.7631	-0.001877	-3.4338	-0.0017128	498.7955723060849	41.378	0.54166	41.474	40.987	41.529	0.096626					25	19	2	0	0	0	0.22431	1	8904	8904		20.871	0	1	520530	+		33384	15899	19461	19462	40732	40732					0.08243538690885543
PLVILKTL	8	Unmodified	_PLVILKTL_					0	0	0		ENSG00000183747|ENST00000573854|ACSM2A;ENSG00000066813|ENST00000329697|ACSM2B	ENSG00000183747|ENST00000573854|ACSM2A	ENSG00000183747|ENST00000573854|ACSM2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7580871582031	2	448.812596	895.61064	0.26461	0.00011876	-0.22987	-0.00010317	0.034749	1.5596E-05	448.8124967449684	68.833	0.43775	68.814	68.624	69.062	-0.019157					23	15	2	0	0	0	0.34185	1	17293	17293		5.7604	0	1	117230			33385	847	19462	19463	40733	40733					0.15865897356093228
PLVKCKFL	8	Unmodified	_PLVKCKFL_					0	0	0		ENST00000373358.7_2_X:75397480-75397852:+|nuORF	ENST00000373358.7_2_X:75397480-75397852:+|nuORF	ENST00000373358.7_2_X:75397480-75397852:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2909240722656	2	474.290974	946.567395	0.31199	0.00014797	-0.22785	-0.00010807	0.084139	3.9906E-05	474.2907630028151	73.107	1.9609	73.078	72.684	74.644	-0.029305					173	70	4	0	0	0	0.45851	1	18725	18725		2.8892	0	1	1742200			33386	9865	19463	19464	40734	40734					0.09197384307140055
PLVKLLSDR	9	Unmodified	_PLVKLLSDR_					0	0	0			REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	REV__ENST00000525971.6_1_12:85431954-85518298:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7669677734375	2	520.826766	1039.63898	0.40499	0.00021093	0.1091	5.6822E-05	0.51409	0.00026775	520.826692399913	32.354	0.51455	32.409	32.277	32.791	0.054371					25	18	2	0	0	0	0.25323	1	6195	6195		6.2058	0	1	117080	+		33387	15629	19464	19465	40735	40735					0.12074595265357857
PLVLLTRSP	9	Unmodified	_PLVLLTRSP_					0	0	0			REV__ENST00000482452.5_1_10:102003500-102020776:-|nuORF	REV__ENST00000482452.5_1_10:102003500-102020776:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7716064453125	2	498.316035	994.617516	0.8638	0.00043045	-1.336	-0.00066574	-0.47218	-0.00023529	498.31526898628726	56.261	0.28954	56.261	56.158	56.447	0					16	10	2	0	0	0	0.22061	1	13547	13547		24.021	1.2843	1	435410	+		33388	21500	19465	19466	40736	40736					0.1199921023664956
PLVLNRSL	8	Unmodified	_PLVLNRSL_					0	0	0			REV__ENST00000303204.8_1_5:176732962-176733132:+|nuORF	REV__ENST00000303204.8_1_5:176732962-176733132:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7829284667969	2	456.287277	910.560001	0.23165	0.0001057	-0.096286	-4.3934E-05	0.13536	6.1765E-05	456.28708245709436	50.174	0.56513	50.174	49.953	50.518	0					36	20	3	0	0	0	0.32778	1	11719	11719		14.582	0	1	522580	+		33389	19837	19466	19467	40737	40737					0.10114368031076992
PLVLNRSL	8	Unmodified	_PLVLNRSL_					0	0	0			REV__ENST00000303204.8_1_5:176732962-176733132:+|nuORF	REV__ENST00000303204.8_1_5:176732962-176733132:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7829284667969	2	456.287277	910.560001	0.5966	0.00027222	-0.44917	-0.00020495	0.14743	6.7272E-05	456.28694061307107	50.153	0.67107	50.198	49.905	50.576	0.044891					43	24	3	0	0	0	0.34046	1	11714	11714		14.582	5.2343	1	462710	+		33390	19837	19466	19467	40738	40738					0.10114368031076992
PLVLSEARKQL	11	Unmodified	_PLVLSEARKQL_					0	0	0		nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49	nc|ENSG00000164663|Q70CQ1-2|USP49	nc|ENSG00000164663|Q70CQ1-2|USP49	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.380615234375	2	627.382437	1252.75032	-0.033487	-2.1009E-05	-0.6194	-0.0003886	-0.65289	-0.00040961	627.3816317037266	103.61	1.0906	103.61	103.49	104.58	0					325	150	3	0	0	0	0.44192	2	27550	27550;27681		5.7319	0.83484	1	28103000			33391	5863	19467	19468	40739;40740	40739					0.1340560990265658
PLVLSEARKQL	11	Unmodified	_PLVLSEARKQL_					0	0	0		nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49	nc|ENSG00000164663|Q70CQ1-2|USP49	nc|ENSG00000164663|Q70CQ1-2|USP49	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.3836059570312	2	627.382437	1252.75032	-0.14989	-9.4041E-05	-0.15927	-9.9924E-05	-0.30916	-0.00019396	627.3821091532982	103.22	0.65375	103.23	102.81	103.46	0.0082626					266	93	3	0	0	0	0.44192	1	27396	27396		5.7319	2.7366	1	27999000			33392	5863	19467	19468	40741	40741					0.1340560990265658
PLVLSEARKQL	11	Unmodified	_PLVLSEARKQL_					0	0	0		nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49	nc|ENSG00000164663|Q70CQ1-2|USP49	nc|ENSG00000164663|Q70CQ1-2|USP49	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.380859375	2	627.382437	1252.75032	-0.14775	-9.2694E-05	-0.40648	-0.00025502	-0.55423	-0.00034772	627.3819610401042	103.66	0.95815	103.67	103.45	104.41	0.0082626					353	133	3	0	0	0	0.44192	1	27596	27596		5.7319	2.7366	1	25439000			33393	5863	19467	19468	40742	40742					0.1340560990265658
PLVPLVPQP	9	Unmodified	_PLVPLVPQP_					0	0	0		ENST00000548759.1_1_12:113494703-113495558:+|nuORF	ENST00000548759.1_1_12:113494703-113495558:+|nuORF	ENST00000548759.1_1_12:113494703-113495558:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2998962402344	2	480.299853	958.585153	0.29682	0.00014256	-0.35373	-0.0001699	-0.056915	-2.7336E-05	480.29976872953665	58.597	0.89615	58.689	58.366	59.262	0.091305					76	31	3	0	0	0	0.1669	1	14293	14293		28.487	2.2187	1	1293500			33394	11778	19468	19469	40743	40743					0.10420422833658449
PLVPLVPQP	9	Unmodified	_PLVPLVPQP_					0	0	0		ENST00000548759.1_1_12:113494703-113495558:+|nuORF	ENST00000548759.1_1_12:113494703-113495558:+|nuORF	ENST00000548759.1_1_12:113494703-113495558:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.3000793457031	2	480.299853	958.585153	0.44471	0.00021359	-0.50326	-0.00024172	-0.058552	-2.8123E-05	480.2996596493443	58.666	0.83197	58.652	58.416	59.248	-0.014267					70	29	4	0	0	0	0.1669	1	14323	14323		28.487	6.7402	1	1434100			33395	11778	19468	19469	40744	40744					0.10420422833658449
PLVRLLQR	8	Unmodified	_PLVRLLQR_					0	0	0			REV__ENST00000515051.1_1_5:175956111-175956726:-|nuORF	REV__ENST00000515051.1_1_5:175956111-175956726:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.2844543457031	2	497.829643	993.644734	0.2209	0.00010997	0.08217	4.0906E-05	0.30307	0.00015088	497.82957655176784	42.592	0.43594	42.677	42.539	42.975	0.085197					21	15	2	0	0	0	0.3439	1	9370	9370		2.8892	0	1	119340	+		33396	16328	19469	19470	40745	40745					0.14765738567700737
PLVRVGDALL	10	Unmodified	_PLVRVGDALL_					0	0	0			REV__ENST00000584049.5_1_11:27723027-27723117:-|nuORF	REV__ENST00000584049.5_1_11:27723027-27723117:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3133544921875	2	526.826766	1051.63898	0.7108	0.00037447	-2.5913	-0.0013652	-1.8805	-0.00099069	526.8266864610073	53.703	0.20793	53.703	53.568	53.776	0					12	7	2	0	0	0	0.27772	1	12678	12678		10.074	2.1638	1	168190	+		33397	22501	19470	19471	40746	40746					0.11522595265364544
PLVSCRLL	8	Unmodified	_PLVSCRLL_					0	0	0		ENST00000396271.7_1_10:27529291-27529648:-|nuORF	ENST00000396271.7_1_10:27529291-27529648:-|nuORF	ENST00000396271.7_1_10:27529291-27529648:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7701721191406	2	450.770406	899.526258	0.15594	7.0294E-05	-1.0321	-0.00046524	-0.87615	-0.00039494	450.77062630714363	46.226	4.6753	46.292	45.782	50.457	0.065048					345	171	6	0	0	0	0.28861	1	11577	11577		32.117	3.9437	1	117510000			33398	10110	19471	19472	40747	40747					0.07247623267676317
PLVTDWYLSGL	11	Unmodified	_PLVTDWYLSGL_					0	0	0		ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;nc|ENSG00000068024|P56524-2|HDAC4;ENSG00000068024|ENST00000543185|HDAC4	ENST00000535493.5_1_2:240016681-240219867:-|nuORF	ENST00000535493.5_1_2:240016681-240219867:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2406921386719	3	421.892173	1262.65469	0.1595	6.7293E-05	1.7278	0.00072894	1.8873	0.00079623	421.8922810406543	26.448	0.7593	26.425	26.158	26.918	-0.022236					84	26	5	0	0	0	0.38623	1	4334	4334		7.0371	2.3212	1	269900			33399	873	19472	19473	40748	40748					0.03386836991739983
PLVVEANRKRG	11	Unmodified	_PLVVEANRKRG_					0	0	0			REV__ENST00000420498.1_1_1:161123670-161129115:-|nuORF	REV__ENST00000420498.1_1_1:161123670-161129115:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8700561523438	2	619.870028	1237.7255	0.12236	7.5846E-05	-0.35072	-0.0002174	-0.22836	-0.00014155	619.8691099845951	93.934	1.0034	93.934	93.572	94.575	0					131	82	2	0	0	0	0.45819	1	25098	25098		3.5965	0	1	117470	+		33400	20854	19473	19474	40749	40749					0.11614974819894996
PLVVEANRKRG	11	Unmodified	_PLVVEANRKRG_					0	0	0			REV__ENST00000420498.1_1_1:161123670-161129115:-|nuORF	REV__ENST00000420498.1_1_1:161123670-161129115:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8699340820312	2	619.870028	1237.7255	0.29543	0.00018313	-0.1832	-0.00011356	0.11223	6.9568E-05	619.8690396100932	94.564	1.5426	94.562	93.798	95.341	-0.0020142					222	130	2	0	0	0	0.45819	1	25099	25099		3.5965	0.60125	1	200390	+		33401	20854	19473	19474	40750	40750					0.11614974819894996
PLVVEKLIN	9	Unmodified	_PLVVEKLIN_					0	0	0		nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	nc|ENSG00000066933|B2RTY4-5|MYO9A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7817993164062	2	512.823692	1023.63283	0.51647	0.00026486	3.4763	0.0017827	3.9928	0.0020476	512.8260175594027	85.849	0.2489	85.849	85.74	85.989	0					12	8	2	0	0	0	0.23783	1	22550	22550		12.532	0	1	74075			33402	851	19474	19475	40751	40751					0.12196077033854635
PLVVLLDV	8	Unmodified	_PLVVLLDV_					0	0	0		ENSG00000104812|ENST00000323798|GYS1	ENSG00000104812|ENST00000323798|GYS1	ENSG00000104812|ENST00000323798|GYS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.9329833984375	2	434.281129	866.547705	0.057802	2.5102E-05	-0.61121	-0.00026544	-0.55341	-0.00024034	434.28303065358233	87	0.14227	86.994	86.936	87.078	-0.0056229					5	4	2	0	0	0	0.344	1	22896	22896		2.5775	1.7838	1	29038			33403	1918	19475	19476	40752	40752					0.10909331568041125
PLVVPIRLS	9	Unmodified	_PLVVPIRLS_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.79241943359375	2	497.326402	992.638252	0.28306	0.00014078	0.33743	0.00016781	0.62049	0.00030859	497.3262293441167	46.529	0.38256	46.529	46.35	46.732	0					18	13	2	0	0	0	0.25879	1	10552	10552		0.52476	0	1	151200	+		33404	16705;23038	19476	19477	40753	40753					0.14163800616313438
PLVVRNDRK	9	Unmodified	_PLVVRNDRK_					0	0	0			REV__ENST00000438306.5_3_7:92214692-92219632:-|nuORF	REV__ENST00000438306.5_3_7:92214692-92219632:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.8030395507812	2	548.832914	1095.65128	0.26517	0.00014553	-0.15044	-8.2564E-05	0.11473	6.2968E-05	548.8330650224534	31.172	0.39051	31.172	30.918	31.309	0					19	13	2	0	0	0	0.25811	1	5753	5753		5.2307	0	1	86953	+		33405	21026	19477	19478	40754	40754					0.10727631728400411
PLVYQLLVL	9	Unmodified	_PLVYQLLVL_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;nc|ENSG00000140525|Q9NVI1-4|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8138427734375	2	529.336436	1056.65832	0.6573	0.00034793	-0.2408	-0.00012746	0.4165	0.00022047	529.3361361813604	74.547	0.62337	74.517	74.271	74.894	-0.030663					49	21	3	0	0	0	0.17611	1	19180	19180		34.102	0	1	1094600			33406	4314	19478	19479	40755	40755					0.13225551556274695
PLWAVNSF	8	Unmodified	_PLWAVNSF_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6|DMXL2;REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2610778808594	2	467.245078	932.475603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.61	1	57.696	57.196	58.196	0.085621								0	0	0	0.34752	1	13910	13910		15.768	4.6538	1		+		33407	17741;14395	19479	19480	40756	40756					0.006664172143359792
PLWDLSPIL	9	Unmodified	_PLWDLSPIL_					0	0	0			REV__nc|ENSG00000175221|Q9Y2X0-2|MED16	REV__nc|ENSG00000175221|Q9Y2X0-2|MED16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.302734375	2	527.302593	1052.59063	0.7591	0.00040027	-0.42023	-0.00022159	0.33887	0.00017869	527.3022665737112	83.22	1.1991	83.22	82.733	83.932	0					115	45	3	0	0	0	0.155	3	21718	21718;21771;21816		30.225	1.738	1	1141900	+		33408	17881	19480	19481	40757;40758;40759	40757					0.06644101625465737
PLWDLSPIL	9	Unmodified	_PLWDLSPIL_					0	0	0			REV__nc|ENSG00000175221|Q9Y2X0-2|MED16	REV__nc|ENSG00000175221|Q9Y2X0-2|MED16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3026123046875	2	527.302593	1052.59063	0.68835	0.00036297	-0.24679	-0.00013013	0.44156	0.00023284	527.30235004288	83.163	1.1874	83.142	82.744	83.931	-0.020584					137	49	3	0	0	0	0.155	3	21694	21694;21743;21799		30.225	1.738	1	1775600	+		33409	17881	19480	19481	40760;40761;40762	40760					0.06644101625465737
PLWDLSPIL	9	Unmodified	_PLWDLSPIL_					0	0	0			REV__nc|ENSG00000175221|Q9Y2X0-2|MED16	REV__nc|ENSG00000175221|Q9Y2X0-2|MED16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3026123046875	2	527.302593	1052.59063	0.68835	0.00036297	-0.24679	-0.00013013	0.44156	0.00023284	527.30235004288	83.163	1.1874	83.142	82.744	83.931	-0.020584					137	49	3	0	0	0	0.21905	1	21899	21899		23.148	1.4018	1	1775600	+		33410	17881	19480	19481	40763	40763					0.06644101625465737
PLWERAAAL	9	Unmodified	_PLWERAAAL_					0	0	0		ENST00000342115.8_1_1:110174320-110174560:+|nuORF	ENST00000342115.8_1_1:110174320-110174560:+|nuORF	ENST00000342115.8_1_1:110174320-110174560:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.790283203125	2	513.790184	1025.56581	0.44631	0.00022931	-0.3754	-0.00019288	0.07091	3.6433E-05	513.7897810096542	58.654	0.59051	58.639	58.386	58.977	-0.014267					36	20	2	0	0	0	0.24467	1	14238	14238		17.113	3.2068	1	415270			33411	9529	19481	19482	40764	40764					0.05405466542742943
PLWERAAAL	9	Unmodified	_PLWERAAAL_					0	0	0		ENST00000342115.8_1_1:110174320-110174560:+|nuORF	ENST00000342115.8_1_1:110174320-110174560:+|nuORF	ENST00000342115.8_1_1:110174320-110174560:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.790184	1025.56581	0.42206	0.00021685	-0.13511	-6.9416E-05	0.28695	0.00014743	513.789970266909	58.641	0.86491	58.641	58.159	59.024	0	0.04534	-2.9664E-05	NaN	17.113	43	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368460			33412	9529	19481	19482							0.05405466542742943
PLWERAAAL	9	Unmodified	_PLWERAAAL_					0	0	0		ENST00000342115.8_1_1:110174320-110174560:+|nuORF	ENST00000342115.8_1_1:110174320-110174560:+|nuORF	ENST00000342115.8_1_1:110174320-110174560:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	513.790184	1025.56581	0.30097	0.00015463	0.1156	5.9396E-05	0.41657	0.00021403	513.7900133703489	58.415	0.70734	58.506	58.194	58.902	0.091301	-0.089165	0.00022796	NaN	17.113	42	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329160			33413	9529	19481	19482							0.05405466542742943
PLWERAAAL	9	Unmodified	_PLWERAAAL_					0	0	0		ENST00000342115.8_1_1:110174320-110174560:+|nuORF	ENST00000342115.8_1_1:110174320-110174560:+|nuORF	ENST00000342115.8_1_1:110174320-110174560:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	513.790184	1025.56581	0.44631	0.00022931	-0.3754	-0.00019288	0.07091	3.6433E-05	513.7897810096542	58.654	0.59051	58.639	58.386	58.977	-0.014267	0.043825	-0.00027659	NaN	17.113	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415270			33414	9529	19481	19482							0.05405466542742943
PLWKKYIS	8	Unmodified	_PLWKKYIS_					0	0	0		nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3215942382812	2	517.805303	1033.59605	0.53141	0.00027517	0.1559	8.0728E-05	0.68731	0.00035589	517.8050635462346	66.407	0.44673	66.407	66.183	66.63	0					31	15	3	0	0	0	0.34185	1	16561	16561		10.183	0	1	165910			33415	487	19482	19483	40765	40765					0.08059825207942595
PLWLENYF	8	Unmodified	_PLWLENYF_					0	0	0			REV__ENST00000520036.1_1_8:85861015-85861132:+|nuORF	REV__ENST00000520036.1_1_8:85861015-85861132:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7731323242188	2	541.271293	1080.52803	0.65391	0.00035394	-0.94022	-0.00050891	-0.28631	-0.00015497	541.270626627323	86.729	1.1309	86.729	86.406	87.537	0					71	47	2	0	0	0	0.35375	2	22807	22807;22855		24.674	0	1	1016000	+		33416	21879	19483	19484	40766;40767	40766					-0.00901044442730381
PLWNPGLL	8	Unmodified	_PLWNPGLL_					0	0	0		ENST00000313863.10_2_17:56283353-56285296:-|nuORF	ENST00000313863.10_2_17:56283353-56285296:-|nuORF	ENST00000313863.10_2_17:56283353-56285296:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.27740478515625	2	455.263271	908.511988	0.4588	0.00020888	-1.6478	-0.00075019	-1.189	-0.00054132	455.26289288574577	77.567	0.19316	77.567	77.47	77.663	0					9	6	2	0	0	0	0.43455	1	20055	20055		11.114	0	1	80517			33417	9338	19484	19485	40768	40768					0.054072941110462125
PLWNPGLL	8	Unmodified	_PLWNPGLL_					0	0	0		ENST00000313863.10_2_17:56283353-56285296:-|nuORF	ENST00000313863.10_2_17:56283353-56285296:-|nuORF	ENST00000313863.10_2_17:56283353-56285296:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2774963378906	2	455.263271	908.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.972	1	77.972	77.472	78.472	0								0	0	0	0.35779	1	20151	20151		11.114	0	1				33418	9338	19484	19485	40769	40769					0.054072941110462125
PLWNPGLL	8	Unmodified	_PLWNPGLL_					0	0	0		ENST00000313863.10_2_17:56283353-56285296:-|nuORF	ENST00000313863.10_2_17:56283353-56285296:-|nuORF	ENST00000313863.10_2_17:56283353-56285296:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2776184082031	2	455.263271	908.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.465	1	77.52	77.02	78.02	0.055412								0	0	0	0.35779	1	19987	19987		11.114	0	1				33419	9338	19484	19485	40770	40770					0.054072941110462125
PLWNPGLL	8	Unmodified	_PLWNPGLL_					0	0	0		ENST00000313863.10_2_17:56283353-56285296:-|nuORF	ENST00000313863.10_2_17:56283353-56285296:-|nuORF	ENST00000313863.10_2_17:56283353-56285296:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.27740478515625	2	455.263271	908.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.573	1	77.541	77.041	78.041	-0.031334								0	0	0	0.35779	1	20014	20014		11.114	0	1				33420	9338	19484	19485	40771	40771					0.054072941110462125
PLWNPGLL	8	Unmodified	_PLWNPGLL_					0	0	0		ENST00000313863.10_2_17:56283353-56285296:-|nuORF	ENST00000313863.10_2_17:56283353-56285296:-|nuORF	ENST00000313863.10_2_17:56283353-56285296:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2775573730469	2	455.263271	908.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.725	1	77.694	77.194	78.194	-0.031334								0	0	0	0.35779	1	20061	20061		11.114	0	1				33421	9338	19484	19485	40772	40772					0.054072941110462125
PLWNPGLL	8	Unmodified	_PLWNPGLL_					0	0	0		ENST00000313863.10_2_17:56283353-56285296:-|nuORF	ENST00000313863.10_2_17:56283353-56285296:-|nuORF	ENST00000313863.10_2_17:56283353-56285296:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2776184082031	2	455.263271	908.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.89	1	77.859	77.359	78.359	-0.031174								0	0	0	0.35779	1	20110	20110		11.114	0	1				33422	9338	19484	19485	40773	40773					0.054072941110462125
PLWPIYILVPV	11	Unmodified	_PLWPIYILVPV_					0	0	0		ENSG00000139572|ENST00000267015|GPR84	ENSG00000139572|ENST00000267015|GPR84	ENSG00000139572|ENST00000267015|GPR84	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.89459228515625	3	437.268804	1308.78458	-0.18139	-7.9314E-05	-2.096	-0.00091653	-2.2774	-0.00099584	437.602319133669	52.036	0.53948	52.035	51.793	52.332	-0.00080872					23	19	2	0	0	0	0.33182	1	12226	12226		5.4027	2.7715	1	156620			33423	4246	19485	19486	40774	40774					0.14254058061533215
PLWSLWHPLVE	11	Unmodified	_PLWSLWHPLVE_					0	0	0			REV__ENST00000468620.1_1_13:98670849-98672064:+|nuORF	REV__ENST00000468620.1_1_13:98670849-98672064:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.5831604003906	3	459.583562	1375.72886	0.18385	8.4496E-05	-0.90315	-0.00041507	-0.7193	-0.00033058	459.5830414263397	53.346	0.79459	53.346	53.09	53.884	0					68	29	4	0	0	0	0.44966	1	12573	12573		4.7159	0.30977	1	1151100	+		33424	13657	19486	19487	40775	40775					0.05602224873950945
PLWSLWHPLVE	11	Unmodified	_PLWSLWHPLVE_					0	0	0			REV__ENST00000468620.1_1_13:98670849-98672064:+|nuORF	REV__ENST00000468620.1_1_13:98670849-98672064:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.5830993652344	3	459.583562	1375.72886	0.16494	7.5801E-05	-1.0256	-0.00047136	-0.8607	-0.00039556	459.5830210175785	53.311	0.75447	53.367	53.141	53.895	0.056255					71	28	4	0	0	0	0.44966	1	12559	12559		4.7159	0.30977	1	1174800	+		33425	13657	19486	19487	40776	40776					0.05602224873950945
PLWSLWHPLVE	11	Unmodified	_PLWSLWHPLVE_					0	0	0			REV__ENST00000468620.1_1_13:98670849-98672064:+|nuORF	REV__ENST00000468620.1_1_13:98670849-98672064:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	459.583562	1375.72886	0.18385	8.4496E-05	-0.90315	-0.00041507	-0.7193	-0.00033058	459.5830414263397	53.346	0.79459	53.346	53.09	53.884	0	-0.099264	0.00011325	NaN	4.7159	68	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1151100	+		33426	13657	19486	19487							0.05602224873950945
PLWSLWHPLVE	11	Unmodified	_PLWSLWHPLVE_					0	0	0			REV__ENST00000468620.1_1_13:98670849-98672064:+|nuORF	REV__ENST00000468620.1_1_13:98670849-98672064:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	459.583562	1375.72886	0.26412	0.00012139	-1.0079	-0.00046323	-0.74381	-0.00034184	459.5830411675347	53.633	0.79065	53.623	53.329	54.119	-0.0096054	0.17737	-3.1223E-05	NaN	4.7159	78	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1416500	+		33427	13657	19486	19487							0.05602224873950945
PLYCSLEYM	9	Unmodified	_PLYCSLEYM_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7830810546875	2	559.748479	1117.4824	0.13347	7.471E-05	3.5473	0.0019856	3.6807	0.0020603	560.2522236086763	69.63	0.35837	69.63	69.511	69.869	0					20	12	2	0	0	0	0.24913	1	17665	17665		7.9102	2.6795	1	142210	+		33428	23008	19487	19488	40777	40777					-0.07163774011632995
PLYCSLEYM	9	Unmodified	_PLYCSLEYM_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	559.748479	1117.4824	0.16709	9.3526E-05	3.5324	0.0019773	3.6995	0.0020708	559.7500546529161	69.665	0.24005	69.643	69.515	69.755	-0.022087	0.0066183	-9.8418E-06	NaN	7.9102	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167010	+		33429	23008	19487	19488							-0.07163774011632995
PLYDLGWY	8	Unmodified	_PLYDLGWY_					0	0	0		nc|ENSG00000215906|A8MY62|LACTBL1;ENSG00000215906|ENST00000426928|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	nc|ENSG00000215906|A8MY62|LACTBL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2745971679688	2	513.750193	1025.48583	0.33846	0.00017389	-1.1784	-0.00060543	-0.83998	-0.00043154	513.749537484672	45.214	0.90823	45.289	44.749	45.657	0.075047					51	33	2	0	0	0	0.34147	1	10189	10189		6.3541	0	1	214130			33430	8412	19488	19489	40778	40778					-0.025890198510978735
PLYELHNNEI	10	Unmodified	_PLYELHNNEI_					0	0	0			REV__ENSG00000188306|ENST00000340806|LRRIQ4	REV__ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.2242736816406	3	414.543544	1240.6088	0.28979	0.00012013	-0.71543	-0.00029658	-0.42563	-0.00017644	414.54322360793645	33.182	0.74971	33.237	32.973	33.722	0.055313					41	26	3	0	0	0	0.3183	1	6361	6361		3.0723	0	1	232750	+		33431	18547	19489	19490	40779	40779					-0.0018780819048060948
PLYFSLETQP	10	Unmodified	_PLYFSLETQP_					0	0	0			REV__nc|nan|Q96LT7-2|C9orf72	REV__nc|nan|Q96LT7-2|C9orf72	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3216552734375	2	597.805697	1193.59684	0.48768	0.00029154	-0.15862	-9.4822E-05	0.32907	0.00019672	597.8052394379503	53.65	0.43791	53.64	53.401	53.839	-0.0096054					20	16	2	0	0	0	0.36786	1	12654	12654		9.3831	1.7742	1	208590	+		33432	16408	19490	19491	40780	40780					0.007785750663288127
PLYHTVRTN	9	Unmodified	_PLYHTVRTN_					0	0	0			REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3156127929688	2	550.795998	1099.57744	-0.33431	-0.00018414	0.59948	0.00033019	0.26517	0.00014605	550.7959602576549	34.476	0.6699	34.476	34.135	34.805	0					42	23	3	0	0	0	0.21905	1	6884	6884		23.148	8.3102	1	393960	+		33433	13712	19491	19492	40781	40781					0.03163663566078867
PLYHTVRTN	9	Unmodified	_PLYHTVRTN_					0	0	0			REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3157348632812	2	550.795998	1099.57744	-0.3179	-0.0001751	0.91343	0.00050311	0.59553	0.00032801	550.7961936341153	34.363	0.55077	34.43	34.203	34.754	0.06636					31	19	2	0	0	0	0.21905	1	6841	6841		23.148	0	1	311390	+		33434	13712	19491	19492	40782	40782					0.03163663566078867
PLYHTVRTN	9	Unmodified	_PLYHTVRTN_					0	0	0			REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3165893554688	2	550.795998	1099.57744	0.050142	2.7618E-05	0.54294	0.00029905	0.59308	0.00032667	550.7962555083923	34.294	0.61724	34.36	34.127	34.744	0.066704					39	21	3	0	0	0	0.21905	1	6781	6781		23.148	2.6948	1	261180	+		33435	13712	19491	19492	40783	40783					0.03163663566078867
PLYKRLAP	8	Unmodified	_PLYKRLAP_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3;TET3|p.N1450Kfs*21|1|0.29|ENSG00000187605|chr2:74101135-74101136|-/A|frameshift_variant	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7799072265625	2	479.297645	956.580737	0.029073	1.3935E-05	0.19838	9.5084E-05	0.22746	0.00010902	479.2976320219329	41.955	0.68149	41.955	41.809	42.49	0					34	24	2	0	0	0	0.34046	1	9225	9225		9.3474	0	1	307670			33436	7695	19492	19493	40784	40784					0.10070958410756248
PLYLVVAR	8	Unmodified	_PLYLVVAR_					0	0	0			REV__ENST00000497437.1_1_1:43279512-43282215:-|nuORF	REV__ENST00000497437.1_1_1:43279512-43282215:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.8049011230469	2	465.792195	929.569838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.725	1	61.725	61.225	62.225	0								0	0	0	0.33276	1	15185	15185		22.453	0	1		+		33437	21686	19493	19494	40785	40785					0.10223556036464743
PLYSGSLLL	9	Unmodified	_PLYSGSLLL_					0	0	0		FAM186A|p.E1748Rfs*31|1|0.34|ENSG00000185958|chr12:50351591-50351591|A/-|frameshift_variant	FAM186A|p.E1748Rfs*31|1|0.34|ENSG00000185958|chr12:50351591-50351591|A/-|frameshift_variant	FAM186A|p.E1748Rfs*31|1|0.34|ENSG00000185958|chr12:50351591-50351591|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.29693603515625	2	481.781493	961.548434	0.61472	0.00029616	-0.45521	-0.00021931	0.15951	7.6848E-05	481.7811303314384	78.21	0.63109	78.21	77.955	78.586	0					33	23	2	0	0	0	0.21905	1	20162	20162		23.148	0	1	138540			33438	12340	19494	19495	40786	40786					0.06612126217100922
PLYSMSHTVL	10	Unmodified	_PLYSMSHTVL_					0	0	0			REV__nc|ENSG00000103222|P33527-8|ABCC1	REV__nc|ENSG00000103222|P33527-8|ABCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.7767944335938	2	574.294442	1146.57433	0.39809	0.00022862	-2.9904	-0.0017173	-2.5923	-0.0014887	574.7935451929089	74.505	0.34482	74.475	74.328	74.673	-0.030655					14	11	2	0	0	0	0.3156	1	19066	19066		10.824	1.4765	1	427370	+		33439	14359	19495	19496	40787	40787					0.006906523970656053
PLYSVRVPL	9	Unmodified	_PLYSVRVPL_					0	0	0			REV__ENST00000392219.6_1_19:35660536-35660752:+|nuORF	REV__ENST00000392219.6_1_19:35660536-35660752:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7899780273438	2	522.316035	1042.61752	0.47578	0.00024851	-1.4025	-0.00073254	-0.9267	-0.00048403	522.3154423832718	55.261	0.12911	55.261	55.221	55.35	0					5	4	2	0	0	0	0.24688	1	13204	13204		10.074	0	1	130870	+		33440	20591	19496	19497	40788	40788					0.09791210236653569
PLYTTFDVI	9	Unmodified	_PLYTTFDVI_					0	0	0		ENST00000551218.1_1_12:94914868-94915450:-|nuORF	ENST00000551218.1_1_12:94914868-94915450:-|nuORF	ENST00000551218.1_1_12:94914868-94915450:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2935791015625	2	534.784233	1067.55391	0.41507	0.00022197	-1.5538	-0.00083097	-1.1388	-0.000609	534.784218447006	79.418	0.93777	79.479	79.141	80.079	0.061417					81	38	3	0	0	0	0.24311	1	20711	20711		16.942	4.4107	1	791660			33441	11802	19497	19498	40789	40789					0.02283805008892159
PLYVLKKM	8	Unmodified	_PLYVLKKM_					0	0	0			REV__ENST00000564761.3_1_16:59788371-59788764:-|nuORF	REV__ENST00000564761.3_1_16:59788371-59788764:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.3042907714844	2	496.304081	990.59361	0.47767	0.00023707	-0.065784	-3.2649E-05	0.41189	0.00020442	496.3039220074158	72.104	1.8162	72.104	71.402	73.218	0					151	65	3	0	0	0	0.43455	1	18422	18422		11.114	1.767	1	1130700	+		33442	22346	19498	19499	40790	40790					0.09793653478629949
PLYVLKKM	8	Unmodified	_PLYVLKKM_					0	0	0			REV__ENST00000564761.3_1_16:59788371-59788764:-|nuORF	REV__ENST00000564761.3_1_16:59788371-59788764:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.30438232421875	2	496.304081	990.59361	0.49758	0.00024695	-0.065097	-3.2308E-05	0.43249	0.00021464	496.30394012061043	72.202	1.7999	72.258	71.43	73.23	0.056572					180	65	3	0	0	0	0.421	1	18368	18368		15.768	6.4208	1	1122500	+		33443	22346	19498	19499	40791	40791					0.09793653478629949
PLYVLKKM	8	Unmodified	_PLYVLKKM_					0	0	0			REV__ENST00000564761.3_1_16:59788371-59788764:-|nuORF	REV__ENST00000564761.3_1_16:59788371-59788764:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.30426025390625	2	496.304081	990.59361	0.46381	0.00023019	-0.023995	-1.1909E-05	0.43982	0.00021828	496.3039549797635	72.194	1.7048	72.167	71.506	73.211	-0.027275					173	60	3	0	0	0	0.43727	1	18376	18376		10.183	0	1	1114600	+		33444	22346	19498	19499	40792	40792					0.09793653478629949
PLYYCFLV	8	Unmodified	_PLYYCFLV_					0	0	0			REV__ENST00000332029.2_1_16:11348583-11348703:-|nuORF	REV__ENST00000332029.2_1_16:11348583-11348703:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8163146972656	2	509.259339	1016.50413	-0.0014337	-7.3011E-07	2.2704	0.0011562	2.269	0.0011555	509.25967588146784	39.748	0.21073	39.748	39.62	39.831	0					9	7	2	0	0	0	0.34297	1	8403	8403		6.3541	1.1234	1	43740	+		33445	20046	19499	19500	40793	40793					-0.003466012007493191
PLYYHIFYMLG	11	Unmodified	_PLYYHIFYMLG_					0	0	0			REV__ENSG00000176387|ENST00000326152|HSD11B2	REV__ENSG00000176387|ENST00000326152|HSD11B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7744140625	3	472.905537	1415.69478	-0.079662	-3.7673E-05	-3.0259	-0.001431	-3.1056	-0.0014686	472.9043850746083	14.678	0.28549	14.574	14.338	14.623	-0.10466					17	9	3	0	0	0	0.33277	1	768	768		1.4551	0	1	37304	+		33446	17933	19500	19501	40794	40794					0.0035606039066351514
PMDAIKIEPP	10	Unmodified	_PMDAIKIEPP_					0	0	0			REV__ENSG00000196900|ENST00000357147|TEX43	REV__ENSG00000196900|ENST00000357147|TEX43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3536987304688	2	555.796817	1109.57908	0.38577	0.00021441	-0.73584	-0.00040898	-0.35008	-0.00019457	555.796970201899	90.541	0.2222	90.541	90.456	90.678	0.0003891					20	14	2	0	0	0	0.31691	1	24016	24016		5.7319	0	1	74641	+		33447	18693	19501	19502	40795	40795					0.028675365397930364
PMDVQTCIM	9	Oxidation (M)	_PM(Oxidation (M))DVQTCIM_		PM(1)DVQTCIM		PM(50)DVQTCIM(-50)	0	0	1		ENSG00000145888|ENST00000274576|GLRA1;nc|ENSG00000145888|P23415|GLRA1;nc|ENSG00000145451|O75311-2|GLRA3;ENSG00000145451|ENST00000274093|GLRA3	ENSG00000145888|ENST00000274576|GLRA1	ENSG00000145888|ENST00000274576|GLRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2247314453125	2	527.224313	1052.43407	1.1728	0.00061833	-1.342	-0.00070755	-0.16923	-8.9224E-05	527.2240227553596	56.463	0.95553	56.444	56.187	57.142	-0.019077					85	34	4	0	0	0	0.057976	1	13582	13582		49.933	9.9757	2	3600700			33448	4678	19502	19503	40796	40796		587			-0.09004590923177602
PMFERINL	8	Unmodified	_PMFERINL_					0	0	0			REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2852783203125	2	510.27077	1018.52699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.389	1	37.482	36.982	37.982	0.093018								0	0	0	0.35466	1	7686	7686		12.532	0.89125	1		+		33449	21798	19503	19504	40797	40797					0.018464179167153816
PMFGSRHLAQ	10	Unmodified	_PMFGSRHLAQ_					0	0	0			REV__ENST00000281513.9_1_2:15415690-15415831:-|nuORF	REV__ENST00000281513.9_1_2:15415690-15415831:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3235473632812	2	572.290025	1142.5655	-0.16535	-9.4629E-05	-2.5427	-0.0014552	-2.708	-0.0015498	572.2886742292847	13.086	0.14215	13.019	12.905	13.047	-0.067496					6	4	2	0	0	0	0.32139	1	322	322		1.3295	0.63916	1	12466	+		33450	19714	19504	19505	40798	40798					-8.276448761534994E-05
PMKKVKFWL	9	Unmodified	_PMKKVKFWL_					0	0	0			REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.8514404296875	2	588.85173	1175.68891	0.3417	0.00020121	0.098622	5.8074E-05	0.44032	0.00025928	588.8510280643255	91.587	0.45925	91.678	91.465	91.924	0.090668					59	33	3	0	0	0	0.30623	1	24311	24311		7.9102	1.7044	1	186370	+		33451	17570	19505	19506	40799	40799					0.10809006669660448
PMKKVKFWL	9	Unmodified	_PMKKVKFWL_					0	0	0			REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.851318359375	2	588.85173	1175.68891	0.53552	0.00031534	0.07598	4.4741E-05	0.6115	0.00036008	588.8508385018337	91.742	0.63477	91.743	91.437	92.072	0.00046539					70	40	3	0	0	0	0.30623	1	24346	24346		7.9102	2.6133	1	289270	+		33452	17570	19505	19506	40800	40800					0.10809006669660448
PMNRTETL	8	Unmodified	_PMNRTETL_					0	0	0			REV__nc|ENSG00000197847|A6NK97|SLC22A20P	REV__nc|ENSG00000197847|A6NK97|SLC22A20P	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.24188232421875	2	481.242209	960.469866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.685	1	87.679	87.179	88.179	-0.0056229								0	0	0	0.37183	1	23116	23116		4.756	0	1		+		33453	23159	19506	19507	40801	40801					-0.011950493596373235
PMNRTETL	8	Unmodified	_PMNRTETL_					0	0	0			REV__nc|ENSG00000197847|A6NK97|SLC22A20P	REV__nc|ENSG00000197847|A6NK97|SLC22A20P	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.24102783203125	2	481.242209	960.469866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.847	1	87.844	87.344	88.344	-0.0028381								0	0	0	0.37183	1	23166	23166		4.756	1.1595	1		+		33454	23159	19506	19507	40802	40802					-0.011950493596373235
PMPYLRRNHQK	11	Unmodified	_PMPYLRRNHQK_					0	0	0			REV__L1PA6_dup2662|chr6:160208729-160214880:-|1.2665007636170862|0.0221250906454286|5.84|510.0|61|2|sense	REV__L1PA6_dup2662|chr6:160208729-160214880:-|1.2665007636170862|0.0221250906454286|5.84|510.0|61|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7503967285156	3	480.594467	1438.76157	0.062112	2.9851E-05	0.43131	0.00020728	0.49342	0.00023713	480.5947599797987	22.421	0.66943	22.376	22.009	22.679	-0.044867					39	22	2	0	0	0	0.33236	1	3146	3146		4.4062	0	1	81087	+		33455	22817	19507	19508	40803	40803					0.05974108725149563
PMVLYFDYFNR	11	Unmodified	_PMVLYFDYFNR_					0	0	0			REV__nc|ENSG00000156711|O15264-2|MAPK13	REV__nc|ENSG00000156711|O15264-2|MAPK13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7643127441406	3	488.904196	1463.69076	0.29167	0.0001426	-0.38842	-0.0001899	-0.096747	-4.73E-05	489.23829156307966	35.512	0.79419	35.594	35.242	36.036	0.082355					46	28	2	0	0	0	0.33303	1	7078	7078		1.1098	1.1098	1	354930	+		33456	16756	19508	19509	40804	40804					-0.022540291030509252
PMVPPRRP	8	Unmodified	_PMVPPRRP_					0	0	0		nc|ENSG00000026652|Q9NRZ5-2|AGPAT4;ENSG00000026652|ENST00000320285|AGPAT4	nc|ENSG00000026652|Q9NRZ5-2|AGPAT4	nc|ENSG00000026652|Q9NRZ5-2|AGPAT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.2742919921875	2	475.273647	948.532741	0.27521	0.0001308	0.71596	0.00034028	0.99117	0.00047108	475.27373038872275	91.06	0.66479	91.151	90.921	91.586	0.090668					70	50	2	0	0	0	0.46461	1	24167	24167		0.79363	0	1	585330			33457	539	19509	19510	40805	40805					0.05641561219056257
PMVPPRRP	8	Unmodified	_PMVPPRRP_					0	0	0		nc|ENSG00000026652|Q9NRZ5-2|AGPAT4;ENSG00000026652|ENST00000320285|AGPAT4	nc|ENSG00000026652|Q9NRZ5-2|AGPAT4	nc|ENSG00000026652|Q9NRZ5-2|AGPAT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.2740478515625	2	475.273647	948.532741	0.39453	0.00018751	0.34896	0.00016585	0.74349	0.00035336	475.27367551534394	91.101	1.1218	91.102	90.899	92.021	0.00047302					99	73	2	0	0	0	0.46461	1	24164	24164		0.79363	0	1	819950			33458	539	19509	19510	40806	40806					0.05641561219056257
PMYLWRRT	8	Unmodified	_PMYLWRRT_					0	0	0		ENST00000377328.5_1_10:18439815-18825042:+|nuORF;ENST00000324631.11_1_10:18439815-18789762:+|nuORF	ENST00000377328.5_1_10:18439815-18825042:+|nuORF	ENST00000377328.5_1_10:18439815-18825042:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7953491210938	2	561.797486	1121.58042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.75	1	118.75	118.25	119.25	0								0	0	0	0.37992	1	30665	30665		0.79363	0.10326	1				33459	9402	19510	19511	40807	40807					0.024492154192330418
PNASPIPVFF	10	Unmodified	_PNASPIPVFF_					0	0	0			REV__ENST00000371933.7_1_1:47143286-47143442:-|nuORF	REV__ENST00000371933.7_1_1:47143286-47143442:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7923583984375	2	544.792392	1087.57023	0.066627	3.6298E-05	0.76543	0.000417	0.83206	0.0004533	544.7921946712831	113.85	0.39533	113.85	113.65	114.04	0					69	45	2	0	0	0	0.39745	1	29545	29545		3.9444	0	1	35402	+		33460	20408	19511	19512	40808	40808					0.0299493096565584
PNASPIPVFF	10	Unmodified	_PNASPIPVFF_					0	0	0			REV__ENST00000371933.7_1_1:47143286-47143442:-|nuORF	REV__ENST00000371933.7_1_1:47143286-47143442:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7922973632812	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.22	1	116.22	115.72	116.72	0								0	0	0	0.37581	1	30094	30094		3.9444	0	1		+		33461	20408	19511	19512	40809	40809					0.0299493096565584
PNASPIPVFF	10	Unmodified	_PNASPIPVFF_					0	0	0			REV__ENST00000371933.7_1_1:47143286-47143442:-|nuORF	REV__ENST00000371933.7_1_1:47143286-47143442:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.335205078125	2	544.792392	1087.57023	0.13569	7.3923E-05	1.6036	0.00087362	1.7393	0.00094754	545.2954606369437	97.91	0.66324	97.91	97.494	98.157	0					131	73	2	0	0	0	0.30079	1	26246	26246		14.838	2.3067	1	202290	+		33462	20408	19511	19512	40810	40810					0.0299493096565584
PNASPIPVFF	10	Unmodified	_PNASPIPVFF_					0	0	0			REV__ENST00000371933.7_1_1:47143286-47143442:-|nuORF	REV__ENST00000371933.7_1_1:47143286-47143442:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7926635742188	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.266	1	90.357	89.857	90.857	0.090668								0	0	0	0.33661	1	23911	23911		20.454	1.0146	1		+		33463	20408	19511	19512	40811	40811					0.0299493096565584
PNASPIPVFF	10	Unmodified	_PNASPIPVFF_					0	0	0			REV__ENST00000371933.7_1_1:47143286-47143442:-|nuORF	REV__ENST00000371933.7_1_1:47143286-47143442:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.791748046875	2	544.792392	1087.57023	0.55338	0.00030148	0.53342	0.00029061	1.0868	0.00059208	544.7917938716707	117.51	0.78748	117.53	117.33	118.12	0.023476					134	97	2	0	0	0	0.39745	2	30436	30436;30506		3.9444	0	1	22069	+		33464	20408	19511	19512	40812;40813	40812					0.0299493096565584
PNAVAVPF	8	Unmodified	_PNAVAVPF_					0	0	0		ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.8798828125	2	407.726521	813.438489	-0.20395	-8.3155E-05	1.8256	0.00074434	1.6216	0.00066119	407.72838923379595	26.347	0.39761	26.347	26.042	26.44	0					23	13	2	0	0	0	0.34297	1	4263	4263		6.3541	0	1	49757			33465	7209	19512	19513	40814	40814					0.024307456685733086
PNDSLGLLLF	10	Unmodified	_PNDSLGLLLF_					0	0	0			REV__ENSG00000172464|ENST00000544374|OR5AP2	REV__ENSG00000172464|ENST00000544374|OR5AP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7921752929688	2	544.802957	1087.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.455	1	76.455	75.955	76.955	0								0	0	0	0.36126	1	19689	19689		10.074	1.4806	1		+		33466	17714	19513	19514	40815	40815					0.05106896274514838
PNFFFRQPSM	10	Unmodified	_PNFFFRQPSM_					0	0	0			REV__nc|ENSG00000126822|A1L390-2|PLEKHG3	REV__nc|ENSG00000126822|A1L390-2|PLEKHG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	635.8062133789062	2	635.805508	1269.59646	0.40638	0.00025838	1.7869	0.0011361	2.1932	0.0013945	635.806747814363	23.67	0.33417	23.597	23.422	23.756	-0.072559					18	11	2	0	0	0	0.41512	1	3562	3562		0.40072	0	1	37955	+		33467	15325	19514	19515	40816	40816					-0.027551231345114502
PNFHFAIDP	9	Unmodified	_PNFHFAIDP_					0	0	0			REV__nc|ENSG00000133317|Q96DT0-4|LGALS12	REV__nc|ENSG00000133317|Q96DT0-4|LGALS12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8139038085938	2	529.258717	1056.50288	0.42581	0.00022536	3.9993	0.0021167	4.4251	0.002342	529.7610189508001	70.33	0.89499	70.392	69.905	70.8	0.061592					43	31	2	0	0	0	0.24311	1	17903	17903		11.64	2.2929	1	223350	+		33468	15618	19515	19516	40817	40817					-0.023110992452984647
PNFLTQLF	8	Unmodified	_PNFLTQLF_					0	0	0			REV__ENST00000568871.1_1_15:52874353-52877153:-|nuORF	REV__ENST00000568871.1_1_15:52874353-52877153:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2646484375	2	490.26601	978.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.877	1	79.877	79.377	80.377	0								0	0	0	0.36169	1	20734	20734		9.3474	0.75416	1		+		33469	22401	19516	19517	40818	40818					0.027349729028514957
PNGALNITHL	10	Unmodified	_PNGALNITHL_					0	0	0			REV__nc|ENSG00000079691|Q5VZK9-2|CARMIL1	REV__nc|ENSG00000079691|Q5VZK9-2|CARMIL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3060302734375	2	525.290548	1048.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.589	1	90.589	90.089	91.089	0								0	0	0	0.35611	1	24018	24018		12.241	1.4167	1		+		33470	13875	19517	19518	40819	40819					0.044202611917853574
PNIDKDHAF	9	Unmodified	_PNIDKDHAF_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2821655273438	2	528.759081	1055.50361	0.63426	0.00033537	-0.89	-0.0004706	-0.25574	-0.00013523	528.7590963477246	45.08	0.37498	45.155	44.859	45.234	0.07505					18	13	2	0	0	0	0.2422	1	9952	9952		19.362	2.4196	1	166270			33471	2643	19518	19519	40820	40820					-0.02192304596246686
PNIHEILREL	10	Unmodified	_PNIHEILREL_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.8494262695312	2	617.351137	1232.68772	0.47623	0.000294	-0.82738	-0.00051078	-0.35115	-0.00021678	617.3505566969944	47.719	0.24878	47.719	47.549	47.797	0					18	8	3	0	0	0	0.29613	1	10857	10857		23.79	4.5328	1	461980	+		33472	14849	19519	19520	40821	40821					0.08068463834479189
PNILQLLPI	9	Unmodified	_PNILQLLPI_					0	0	0			REV__ENSG00000163515|ENST00000295755|RETNLB	REV__ENSG00000163515|ENST00000295755|RETNLB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.8453674316406	2	510.826235	1019.63792	0.29994	0.00015322	-0.099452	-5.0803E-05	0.20048	0.00010241	510.8261231833045	43.369	0.67706	43.369	43.116	43.793	0					57	24	3	0	0	0	0.20344	1	9587	9587		23.148	10.617	1	968820	+		33473	17061	19520	19521	40822	40822					0.12888380896470153
PNIRGLLIL	9	Unmodified	_PNIRGLLIL_					0	0	0			REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	REV__nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7720031738281	2	504.831852	1007.64915	0.12066	6.0911E-05	0.4333	0.00021874	0.55396	0.00027965	504.83192736486495	61.336	0.5492	61.336	61.128	61.677	0					38	20	3	0	0	0	0.2322	1	15084	15084		14.838	0	1	291980	+		33474	16298	19521	19522	40823	40823					0.14563202990632362
PNIRKVDLSK	10	Unmodified	_PNIRKVDLSK_					0	0	0		ENST00000472011.5_1_1:235582749-235612074:+|nuORF;nc|ENSG00000285053|Q15813|TBCE;nc|ENSG00000285053|Q15813-2|TBCE	ENST00000472011.5_1_1:235582749-235612074:+|nuORF	ENST00000472011.5_1_1:235582749-235612074:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8095092773438	2	585.35368	1168.69281	-0.053272	-3.1183E-05	0.17716	0.0001037	0.12388	7.2516E-05	585.3540769178846	28.001	0.33839	28.001	27.849	28.188	0.0004673					22	11	3	0	0	0	0.32054	1	4818	4818		1.3295	0	1	122930			33475	10885	19522	19523	40824	40824					0.11520767697084011
PNIYVSYYVT	10	Unmodified	_PNIYVSYYVT_					0	0	0		nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	nc|ENSG00000054654|Q8WXH0-7|SYNE2	nc|ENSG00000054654|Q8WXH0-7|SYNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5694274902344	3	406.87289	1217.59684	-0.25178	-0.00010244	-4.1205	-0.0016765	-4.3723	-0.001779	406.8720628924059	15.938	0.86838	15.938	15.706	16.574	0					43	30	2	0	0	0	0.32132	1	1245	1245		0.12286	0	1	29704			33476	10077	19523	19524	40825	40825					-0.0032542493368055148
PNKIKLITL	9	Unmodified	_PNKIKLITL_					0	0	0		ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.347412109375	2	520.347335	1038.68012	0.45495	0.00023673	-0.4765	-0.00024795	-0.021547	-1.1212E-05	520.3471676767073	71.914	2.1497	71.887	71.57	73.72	-0.027275					197	77	5	0	0	0	0.15219	2	18511	18511;18584		30.637	0.93222	1	13678000			33477	377	19524	19525	40826;40827	40826					0.16232356304840323
PNLDNKQLF	9	Unmodified	_PNLDNKQLF_					0	0	0			REV__ENSG00000137055|ENST00000397292|PLAA	REV__ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.792724609375	2	544.790381	1087.56621	1.0798	0.00058825	3.1475	0.0017147	4.2273	0.002303	544.7929497205371	55.993	4.5378	56.064	55.618	60.156	0.070889					447	165	6	0	0	0	0.051692	2	14032	13889;14032		52.268	3.9225	1	384440000	+		33478	15842	19525	19526	40828;40829	40829					0.025928414719373905
PNLDNKQLF	9	Unmodified	_PNLDNKQLF_					0	0	0			REV__ENSG00000137055|ENST00000397292|PLAA	REV__ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7927856445312	2	544.790381	1087.56621	1.1952	0.00065112	3.2486	0.0017698	4.4438	0.0024209	544.7930213659608	56.262	4.4551	56.243	55.646	60.101	-0.019081					450	161	6	0	0	0	0.041175	1	14063	14063		56.177	5.322	1	417290000	+		33479	15842	19525	19526	40830	40830					0.025928414719373905
PNLNNITIYP	10	Unmodified	_PNLNNITIYP_					0	0	0			REV__ENSG00000243137|ENST00000405312|PSG4;REV__ENST00000595138.1_1_19:43519232-43530599:-|nuORF;REV__ENSG00000183668|ENST00000270077|PSG9	REV__ENST00000595138.1_1_19:43519232-43530599:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.7969360351562	2	579.811313	1157.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.991	1	63.981	63.481	64.481	-0.0095329								0	0	0	0.33137	1	15870	15870		22.658	1.1211	1		+		33480	22590;19190;18276	19526	19527	40831	40831					0.035573971604890176
PNLPRKAKR	9	Unmodified	_PNLPRKAKR_					0	0	0			REV__ENST00000360472.8_1_1:160183673-160183802:+|nuORF	REV__ENST00000360472.8_1_1:160183673-160183802:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.771240234375	2	540.343449	1078.67235	0.39033	0.00021091	-0.66347	-0.0003585	-0.27314	-0.00014759	540.343122459468	22.317	0.31415	22.217	21.994	22.308	-0.10034					16	11	2	0	0	0	0.25938	1	3092	3092		4.3292	2.485	1	41536	+		33481	20258	19527	19528	40832	40832					0.1361564182791426
PNLPRKAKR	9	Unmodified	_PNLPRKAKR_					0	0	0			REV__ENST00000360472.8_1_1:160183673-160183802:+|nuORF	REV__ENST00000360472.8_1_1:160183673-160183802:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7714233398438	2	540.343449	1078.67235	0.33154	0.00017915	-0.46791	-0.00025283	-0.13636	-7.3684E-05	540.3432646206746	22.317	0.40263	22.268	22.064	22.467	-0.049377					20	13	2	0	0	0	0.25938	1	3156	3156		4.3292	2.485	1	45560	+		33482	20258	19527	19528	40833	40833					0.1361564182791426
PNLTNKKIST	10	Unmodified	_PNLTNKKIST_					0	0	0			REV__ENSG00000213023|ENST00000600079|SYT3	REV__ENSG00000213023|ENST00000600079|SYT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3250122070312	2	558.324588	1114.63462	0.37172	0.00020754	0.51748	0.00028892	0.8892	0.00049646	558.3245913787237	89.91	0.75346	89.91	89.638	90.391	0.00039673					134	63	3	0	0	0	0.38515	2	23764	23764;23847		6.2058	0.47393	1	421460	+		33483	19031	19528	19529	40834;40835	40834					0.081890860518115
PNLVREGDV	9	Unmodified	_PNLVREGDV_					0	0	0			REV__nc|ENSG00000011143|Q9NXB0-2|MKS1	REV__nc|ENSG00000011143|Q9NXB0-2|MKS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7789611816406	2	499.766906	997.519259	-0.53317	-0.00026646	0.53582	0.00026779	0.0026475	1.3231E-06	499.7671096386799	34.387	0.94193	34.454	34.121	35.063	0.067734					73	33	3	0	0	0	0.21303	1	6952	6952		21.747	5.8995	1	1366000	+		33484	22877	19529	19530	40836	40836					0.02039981920813716
PNLVREGDV	9	Unmodified	_PNLVREGDV_					0	0	0			REV__nc|ENSG00000011143|Q9NXB0-2|MKS1	REV__nc|ENSG00000011143|Q9NXB0-2|MKS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7790222167969	2	499.766906	997.519259	-0.054594	-2.7285E-05	0.090203	4.508E-05	0.035608	1.7796E-05	499.7668889787153	34.353	0.89468	34.421	34.128	35.023	0.067612					70	31	3	0	0	0	0.21303	1	6927	6927		21.747	7.165	1	1489800	+		33485	22877	19529	19530	40837	40837					0.02039981920813716
PNLWFPRK	8	Unmodified	_PNLWFPRK_					0	0	0		ENST00000232766.5_1_3:47388075-47388231:+|nuORF	ENST00000232766.5_1_3:47388075-47388231:+|nuORF	ENST00000232766.5_1_3:47388075-47388231:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.314208984375	2	529.300719	1056.58688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.45	1	112.47	111.97	112.97	0.0131								0	0	0	0.37724	1	29268	29268		2.3027	0.24298	1				33486	8866	19530	19531	40838	40838					0.06085476642260801
PNMKSRRS	8	Unmodified	_PNMKSRRS_					0	0	0			REV__ENST00000474100.1_1_1:151372658-151373852:+|nuORF	REV__ENST00000474100.1_1_1:151372658-151373852:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2502746582031	2	488.261268	974.507982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.983	1	17.983	17.483	18.483	0								0	0	0	0.33941	1	1794	1794		19.439	2.4967	1		+		33487	16849	19531	19532	40839	40839					0.01970881345687303
PNMLEPKIF	9	Unmodified	_PNMLEPKIF_					0	0	0		nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1;nc|ENSG00000099204|O14639-2|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.792724609375	2	544.794078	1087.5736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.44	1	59.44	58.94	59.94	0								0	0	0	0.10131	1	14472	14472		46.021	1.6139	1				33488	1477	19532	19533	40840	40840					0.03331857748003131
PNMLEPKIF	9	Unmodified	_PNMLEPKIF_					0	0	0		nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1;nc|ENSG00000099204|O14639-2|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7921752929688	2	544.794078	1087.5736	0.55315	0.00030135	-2.7966	-0.0015236	-2.2435	-0.0012222	544.7919086770603	119.64	0.18141	119.67	119.6	119.78	0.027756					30	21	2	0	0	0	0.33018	1	30937	30937		4.3292	0.38484	1	29311			33489	1477	19532	19533	40841	40841					0.03331857748003131
PNNIIDKPR	9	Unmodified	_PNNIIDKPR_					0	0	0			REV__ENSG00000137225|ENST00000398776|CAPN11	REV__ENSG00000137225|ENST00000398776|CAPN11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.3197021484375	2	533.803823	1065.59309	0.41337	0.00022066	0.32425	0.00017308	0.73762	0.00039374	533.8039533072345	26.805	1.2314	26.805	26.469	27.7	0					140	42	5	0	0	0	0.20344	1	4398	4398		23.148	11.654	1	4908800	+		33490	15851	19533	19534	40842	40842					0.06291950083118536
PNNIIDKPR	9	Unmodified	_PNNIIDKPR_					0	0	0			REV__ENSG00000137225|ENST00000398776|CAPN11	REV__ENSG00000137225|ENST00000398776|CAPN11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.3197021484375	2	533.803823	1065.59309	0.55116	0.00029421	0.092095	4.9161E-05	0.64326	0.00034337	533.8038446384352	26.879	1.269	26.867	26.483	27.752	-0.01156					143	44	5	0	0	0	0.27532	1	4401	4401		12.532	1.7076	1	5159900	+		33491	15851	19533	19534	40843	40843					0.06291950083118536
PNNIKLVRI	9	Unmodified	_PNNIKLVRI_					0	0	0			REV__ENSG00000165943|ENST00000298894|MOAP1	REV__ENSG00000165943|ENST00000298894|MOAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.8042602539062	2	533.840208	1065.66586	0.47379	0.00025293	-0.91111	-0.00048639	-0.43732	-0.00023346	533.8396396692009	27.023	0.54749	27.011	26.797	27.344	-0.01156					29	19	2	0	0	0	0.21905	1	4493	4493		16.942	0	1	136250	+		33492	17281	19534	19535	40844	40844					0.1356570387656575
PNNLPPQR	8	Unmodified	_PNNLPPQR_					0	0	0			REV__ENST00000521587.1_1_8:95987590-95993104:+|nuORF	REV__ENST00000521587.1_1_8:95987590-95993104:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.7430419921875	2	468.256508	934.498464	-0.04013	-1.8791E-05	-0.43513	-0.00020375	-0.47526	-0.00022254	468.25633771963726	26.786	0.50706	26.786	26.614	27.121	0					31	17	2	0	0	0	0.32038	2	4453	4453;4502		28.487	10.352	1	107650	+		33493	21904	19535	19536	40845;40846	40845					0.0285943633180068
PNNLPPQR	8	Unmodified	_PNNLPPQR_					0	0	0			REV__ENST00000521587.1_1_8:95987590-95993104:+|nuORF	REV__ENST00000521587.1_1_8:95987590-95993104:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7430725097656	2	468.256508	934.498464	0.035176	1.6471E-05	-0.34091	-0.00015963	-0.30573	-0.00014316	468.2564759542368	26.844	0.53629	26.823	26.564	27.1	-0.021412					30	18	2	0	0	0	0.31088	1	4472	4472		28.487	10.352	1	155160	+		33494	21904	19535	19536	40847	40847					0.0285943633180068
PNNLPPQR	8	Unmodified	_PNNLPPQR_					0	0	0			REV__ENST00000521587.1_1_8:95987590-95993104:+|nuORF	REV__ENST00000521587.1_1_8:95987590-95993104:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.74273681640625	2	468.256508	934.498464	0.31473	0.00014737	-0.5946	-0.00027843	-0.27987	-0.00013105	468.25631011333695	26.85	0.56523	26.838	26.595	27.16	-0.01156					30	19	2	0	0	0	0.20518	3	4503	4459;4503;4521		42.095	11.87	1	157550	+		33495	21904	19535	19536	40848;40849;40850	40849					0.0285943633180068
PNNLPPQR	8	Unmodified	_PNNLPPQR_					0	0	0			REV__ENST00000521587.1_1_8:95987590-95993104:+|nuORF	REV__ENST00000521587.1_1_8:95987590-95993104:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	468.256508	934.498464	-0.04013	-1.8791E-05	-0.43513	-0.00020375	-0.47526	-0.00022254	468.25633771963726	26.786	0.50706	26.786	26.614	27.121	0	-0.029617	1.7497E-05	NaN	42.095	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107650	+		33496	21904	19535	19536							0.0285943633180068
PNNLPPQR	8	Unmodified	_PNNLPPQR_					0	0	0			REV__ENST00000521587.1_1_8:95987590-95993104:+|nuORF	REV__ENST00000521587.1_1_8:95987590-95993104:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	468.256508	934.498464	0.31473	0.00014737	-0.5946	-0.00027843	-0.27987	-0.00013105	468.25631011333695	26.85	0.56523	26.838	26.595	27.16	-0.01156	0.022584	-0.00013185	NaN	42.095	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157550	+		33497	21904	19535	19536							0.0285943633180068
PNPSITYN	8	Unmodified	_PNPSITYN_					0	0	0			REV__nc|ENSG00000290894|Q96TA0|PCDHB18P	REV__nc|ENSG00000290894|Q96TA0|PCDHB18P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2560119628906	2	453.2218	904.429047	0.0272	1.2327E-05	-0.15367	-6.9646E-05	-0.12647	-5.7319E-05	453.2234225217214	23.437	0.2161	23.349	23.191	23.407	-0.087608					9	7	2	0	0	0	0.34272	1	3432	3432		7.9102	0	1	22069	+		33498	23255	19536	19537	40851	40851					-0.026990674076273535
PNPVVKGRR	9	Unmodified	_PNPVVKGRR_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2923278808594	2	511.814525	1021.6145	0.47961	0.00024547	-0.98394	-0.0005036	-0.50433	-0.00025813	511.8140873824494	21.213	0.59438	21.103	20.894	21.488	-0.11003					38	20	3	0	0	0	0.26145	1	2818	2818		0.52476	0.52476	1	145350			33499	2226	19537	19538	40852	40852					0.10455379902521145
PNQEVQRVC	9	Unmodified	_PNQEVQRVC_					0	0	0		ENSG00000172208|ENST00000624868|OR4X2	ENSG00000172208|ENST00000624868|OR4X2	ENSG00000172208|ENST00000624868|OR4X2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2933959960938	2	536.76384	1071.51313	0.59304	0.00031832	1.6764	0.00089984	2.2695	0.0012182	536.7645348792855	36.601	0.39844	36.601	36.416	36.815	0					21	13	2	0	0	0	0.22596	1	7513	7513		15.847	2.8047	1	176130			33500	6611	19538	19539	40853	40853					-0.019768595823506985
PNQEVQRVC	9	Unmodified	_PNQEVQRVC_					0	0	0		ENSG00000172208|ENST00000624868|OR4X2	ENSG00000172208|ENST00000624868|OR4X2	ENSG00000172208|ENST00000624868|OR4X2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	536.76384	1071.51313	0.5133	0.00027552	1.7207	0.00092362	2.234	0.0011991	536.7647041533097	36.429	0.4491	36.512	36.308	36.757	0.082359	-0.01722	0.00020441	NaN	15.847	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193110			33501	6611	19538	19539							-0.019768595823506985
PNQEVQRVC	9	Unmodified	_PNQEVQRVC_					0	0	0		ENSG00000172208|ENST00000624868|OR4X2	ENSG00000172208|ENST00000624868|OR4X2	ENSG00000172208|ENST00000624868|OR4X2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	536.76384	1071.51313	0.92109	0.00049441	1.0908	0.00058549	2.0119	0.0010799	536.7643884524897	36.387	0.34766	36.474	36.333	36.68	0.086246	-0.055224	-0.00047185	NaN	15.847	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158890			33502	6611	19538	19539							-0.019768595823506985
PNQKRLTLL	9	Unmodified	_PNQKRLTLL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2991333007812	2	541.837665	1081.66078	0.57207	0.00030997	0.23352	0.00012653	0.80558	0.0004365	541.8377128941675	37.952	0.41451	37.952	37.735	38.149	0					23	14	2	0	0	0	0.23749	1	7870	7870		20.415	13.691	1	208560			33503	882	19539	19540	40854	40854					0.12321400013956918
PNQKRLTLL	9	Unmodified	_PNQKRLTLL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2991943359375	2	541.837665	1081.66078	0.57465	0.00031137	0.34565	0.00018728	0.9203	0.00049865	541.8376777222489	37.884	0.33253	37.975	37.821	38.153	0.090881					20	11	2	0	0	0	0.21538	1	7828	7828		26.268	16.885	1	163170			33504	882	19539	19540	40855	40855					0.12321400013956918
PNQKRLTLL	9	Unmodified	_PNQKRLTLL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.299072265625	2	541.837665	1081.66078	0.52623	0.00028513	0.41824	0.00022662	0.94446	0.00051175	541.8377149812898	37.769	0.55433	37.867	37.712	38.266	0.097527					27	19	2	0	0	0	0.22701	1	7848	7848		23.79	14.407	1	164770			33505	882	19539	19540	40856	40856					0.12321400013956918
PNRVCSEFI	9	Unmodified	_PNRVCSEFI_					0	0	0			REV__nc|ENSG00000080839|P28749-2|RBL1	REV__nc|ENSG00000080839|P28749-2|RBL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7634887695312	2	532.763309	1063.51206	0.52146	0.00027781	-0.11257	-5.9975E-05	0.40888	0.00021784	532.7632132639615	64.454	0.97417	64.547	64.012	64.986	0.09288					75	35	3	0	0	0	0.25314	1	16000	16000		15.847	1.2655	1	851480	+		33506	13896	19540	19541	40857	40857					-0.017150739512771906
PNRVCSEFI	9	Unmodified	_PNRVCSEFI_					0	0	0			REV__nc|ENSG00000080839|P28749-2|RBL1	REV__nc|ENSG00000080839|P28749-2|RBL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7634887695312	2	532.763309	1063.51206	0.6401	0.00034102	-0.31749	-0.00016915	0.32261	0.00017187	532.7631595962648	64.497	0.92365	64.488	64.074	64.998	-0.0095367					68	33	3	0	0	0	0.26612	1	16001	16001		13.906	5.3128	1	829670	+		33507	13896	19540	19541	40858	40858					-0.017150739512771906
PNSIPFGLPF	10	Unmodified	_PNSIPFGLPF_					0	0	0			REV__nc|ENSG00000184313|Q68CQ1-4|MROH7	REV__nc|ENSG00000184313|Q68CQ1-4|MROH7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7918701171875	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.31	1	113.31	112.81	113.81	0								0	0	0	0.37044	1	29431	29431		6.2058	2.2614	1		+		33508	18311	19541	19542	40859	40859					0.0299493096565584
PNSIPFGLPF	10	Unmodified	_PNSIPFGLPF_					0	0	0			REV__nc|ENSG00000184313|Q68CQ1-4|MROH7	REV__nc|ENSG00000184313|Q68CQ1-4|MROH7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7921752929688	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.11	1	117.11	116.61	117.61	0								0	0	0	0.37044	1	30298	30298		6.2058	2.2614	1		+		33509	18311	19541	19542	40860	40860					0.0299493096565584
PNSSRKVWA	9	Unmodified	_PNSSRKVWA_					0	0	0			REV__ENST00000432132.2_1_9:98909238-98910135:+|nuORF;REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7958374023438	2	522.78289	1043.55123	0.66875	0.00034961	-0.080289	-4.1974E-05	0.58846	0.00030764	522.782776807709	32.168	1.2451	32.168	31.9	33.145	0					111	44	4	0	0	0	0.28128	1	6391	6391		11.64	0	1	3465800	+		33510	20956;20958	19542	19543	40861	40861					0.031193943946163927
PNTKIIIL	8	Unmodified	_PNTKIIIL_					0	0	0			REV__ENSG00000184698|ENST00000642046|OR51M1	REV__ENSG00000184698|ENST00000642046|OR51M1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.77105712890625	2	456.299853	910.585153	0.21449	9.7871E-05	1.6906	0.0007714	1.905	0.00086927	456.3003070727195	29.901	0.73492	29.914	29.72	30.454	0.012264					47	25	2	0	0	0	0.34437	1	5357	5357		0.69038	0	1	151240	+		33511	18330	19543	19544	40862	40862					0.12628422833677178
PNWLKRML	8	Unmodified	_PNWLKRML_					0	0	0			REV__ENST00000459775.5_1_2:85848673-85875928:+|nuORF	REV__ENST00000459775.5_1_2:85848673-85875928:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3142700195312	2	529.302404	1056.59026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.07	1	112.06	111.56	112.56	-0.015625								0	0	0	0.37724	1	29157	29157		2.3027	0	1		+		33512	17485	19544	19545	40863	40863					0.06422403424630829
PPADKSRTVAM	11	Unmodified	_PPADKSRTVAM_					0	0	0			REV__ENSG00000105738|ENST00000222345|SIPA1L3	REV__ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8087158203125	2	586.808248	1171.60194	0.30109	0.00017668	0.67753	0.00039758	0.97862	0.00057426	586.8082484621843	43.126	1.7087	43.126	42.33	44.039	0					140	62	3	0	0	0	0.14098	1	9493	9493		36.506	4.2007	1	730440	+		33513	14485	19545	19546	40864	40864					0.023005556573025387
PPAGLTVATIA	11	Unmodified	_PPAGLTVATIA_					0	0	0			REV__ENST00000563686.5_1_18:52942938-53070719:-|nuORF	REV__ENST00000563686.5_1_18:52942938-53070719:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2336120605469	2	505.797675	1009.5808	0.26396	0.00013351	0.203	0.00010268	0.46696	0.00023619	505.79794895811324	19.459	1.1022	19.403	18.876	19.978	-0.055691					70	38	2	0	0	0	0.33255	1	2186	2186		2.9952	0	1	44934	+		33514	22334	19546	19547	40865	40865					0.0763891362009872
PPAILLLEYF	10	Unmodified	_PPAILLLEYF_					0	0	0		TRPM7|p.K777Ffs*24|1|0.06|ENSG00000092439|chr15:50609914-50609915|-/GGAAGTGTTTAAAGAAG|frameshift_variant	TRPM7|p.K777Ffs*24|1|0.06|ENSG00000092439|chr15:50609914-50609915|-/GGAAGTGTTTAAAGAAG|frameshift_variant	TRPM7|p.K777Ffs*24|1|0.06|ENSG00000092439|chr15:50609914-50609915|-/GGAAGTGTTTAAAGAAG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.3423461914062	2	588.339175	1174.6638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112	1	111.99	111.49	112.49	-0.015625								0	0	0	0.38126	1	29136	29136		1.6526	0.17072	1				33515	23403	19547	19548	40866	40866					0.08345230348072619
PPAIPIRYY	9	Unmodified	_PPAIPIRYY_					0	0	0		nc|ENSG00000205060|Q969S0-2|SLC35B4;nc|ENSG00000205060|Q969S0-3|SLC35B4;ENSG00000205060|ENST00000378509|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.741455078125	2	545.30821	1088.60187	0.55944	0.00030507	-0.31259	-0.00017046	0.24684	0.00013461	545.307733920526	27.133	0.5524	27.122	26.822	27.374	-0.01156					36	19	3	0	0	0	0.25938	1	4637	4637		4.3292	0	1	93742			33516	8268	19548	19549	40867	40867					0.06110923719620587
PPANHFSR	8	Unmodified	_PPANHFSR_					0	0	0			REV__ENSG00000206107|ENST00000382835|KRTAP27-1	REV__ENSG00000206107|ENST00000382835|KRTAP27-1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.9375	2	463.235576	924.456599	-0.074923	-3.4707E-05	-0.64355	-0.00029811	-0.71847	-0.00033282	463.23495928408636	19.882	0.66123	19.882	19.574	20.235	0					53	24	3	0	0	0	0.34247	1	2473	2473		8.5933	8.5933	1	170330	+		33517	19015	19549	19550	40868	40868					-0.008651193567175142
PPATEKLTT	9	Unmodified	_PPATEKLTT_					0	0	0		ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	ENSG00000167513|ENST00000301019|CDT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.27734375	2	479.266207	956.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.489	1	73.489	72.989	73.989	0								0	0	0	0.23852	1	18785	18785		10.074	0	1				33518	6182	19550	19551	40869	40869					0.03786347832033243
PPATRGAR	8	Unmodified	_PPATRGAR_					0	0	0		ENST00000517894.5_3_8:143530803-143545560:+|nuORF	ENST00000517894.5_3_8:143530803-143545560:+|nuORF	ENST00000517894.5_3_8:143530803-143545560:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.238037109375	2	413.238119	824.461684	0.3056	0.00012628	-0.52198	-0.0002157	-0.21638	-8.9418E-05	413.23776678259657	68.037	2.13	68.115	67.546	69.676	0.078049					115	76	3	0	0	0	0.45431	1	17138	17138		4.3292	1.7518	1	565240			33519	11442	19551	19552	40870	40870					0.04243184505901354
PPDPPLHF	8	Unmodified	_PPDPPLHF_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.25	2	460.237253	918.459953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.269	1	71.269	70.769	71.769	0								0	0	0	0.36169	1	18108	18108		9.3474	2.9933	1				33520	2697	19552	19553	40871	40871					-0.002538693027076988
PPDQRGLDQQI	11	Unmodified	_PPDQRGLDQQI_					0	0	0			REV__CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant	REV__CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8250122070312	2	633.825483	1265.63641	-0.062238	-3.9448E-05	-0.17883	-0.00011335	-0.24107	-0.0001528	633.8252199477857	100.16	0.6366	100.16	99.827	100.46	0					174	83	3	0	0	0	0.46655	2	26785	26785;26813		2.4985	0	1	234360	+		33521	13135	19553	19554	40872;40873	40872					0.01422095069756324
PPDQRGLDQQI	11	Unmodified	_PPDQRGLDQQI_					0	0	0			REV__CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant	REV__CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.82470703125	2	633.825483	1265.63641	0.1979	0.00012543	-0.3725	-0.0002361	-0.1746	-0.00011067	633.8252017333397	100.13	0.68082	100.17	99.768	100.45	0.038994					196	89	3	0	0	0	0.43149	1	26741	26741		7.1017	2.2047	1	243740	+		33522	13135	19553	19554	40874	40874					0.01422095069756324
PPDSNPWPEKL	11	Unmodified	_PPDSNPWPEKL_					0	0	0			REV__nc|ENSG00000132470|P16144-4|ITGB4	REV__nc|ENSG00000132470|P16144-4|ITGB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.5823974609375	3	427.215427	1278.62445	-0.27428	-0.00011718	-0.98981	-0.00042286	-1.2641	-0.00054004	427.2148485739129	19.216	0.73332	19.216	19.006	19.739	0					41	25	2	0	0	0	0.3325	1	2299	2299		4.1166	0.52957	1	141680	+		33523	15574	19554	19555	40875	40875					-0.0037152167342355824
PPDWQTQRTI	10	Unmodified	_PPDWQTQRTI_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.90826416015625	3	414.547288	1240.62004	-0.21203	-8.7895E-05	1.602	0.00066412	1.39	0.00057622	414.54819151526715	23.457	0.56109	23.457	23.173	23.734	0					34	19	3	0	0	0	0.32082	1	3534	3534		3.3196	0.68841	1	82127	+		33524	18154	19555	19556	40876	40876					0.009350139036541805
PPDWQTQRTI	10	Unmodified	_PPDWQTQRTI_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.9082946777344	3	414.547288	1240.62004	0.18051	7.4832E-05	1.3888	0.00057574	1.5694	0.00065057	414.54811348928814	23.573	0.67261	23.5	23.18	23.852	-0.072559					48	20	3	0	0	0	0.3213	1	3593	3593		1.9064	0	1	66213	+		33525	18154	19555	19556	40877	40877					0.009350139036541805
PPEPERSIGNF	11	Unmodified	_PPEPERSIGNF_					0	0	0			REV__ENSG00000151690|ENST00000392328|MFSD6	REV__ENSG00000151690|ENST00000392328|MFSD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.8091430664062	2	621.809302	1241.60405	0.13826	8.5971E-05	0.15758	9.7987E-05	0.29584	0.00018396	621.8093730407219	31.145	0.63958	31.145	30.862	31.502	0					49	22	3	0	0	0	0.38623	1	5792	5792		13.042	0.80181	1	316360	+		33526	16550	19556	19557	40878	40878					-0.007086923332508377
PPFLKIWLH	9	Unmodified	_PPFLKIWLH_					0	0	0			REV__nc|ENSG00000091181|Q01344-5|IL5RA	REV__nc|ENSG00000091181|Q01344-5|IL5RA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.843017578125	2	575.84222	1149.66989	0.23924	0.00013777	0.75044	0.00043214	0.98969	0.0005699	575.8425054517141	80.394	2.8523	80.459	78.561	81.414	0.065094					409	121	4	0	0	0	0.32733	1	20519	20519		4.756	0.42677	1	5421400	+		33527	14062	19557	19558	40879	40879					0.10103793370262792
PPFSSLPAL	9	Unmodified	_PPFSSLPAL_					0	0	0		ENST00000419296.1_1_2:110752028-110752415:+|nuORF	ENST00000419296.1_1_2:110752028-110752415:+|nuORF	ENST00000419296.1_1_2:110752028-110752415:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7605895996094	2	464.760561	927.506569	0.10815	5.0263E-05	0.7928	0.00036846	0.90094	0.00041872	464.7607866655946	69.336	1.0993	69.314	68.918	70.018	-0.022087					85	39	3	0	0	0	0.11517	1	17482	17482		36.044	0	1	500020			33528	10350	19558	19559	40880	40880					0.03991570528569355
PPFVFPLT	8	Unmodified	_PPFVFPLT_					0	0	0			REV__ENST00000231061.8_1_5:151043015-151043667:-|nuORF	REV__ENST00000231061.8_1_5:151043015-151043667:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2738037109375	2	459.260197	916.50584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.505	1	12.437	11.937	12.937	-0.06806								0	0	0	0.37992	1	146	146		0.79363	0	1		+		33529	19463	19559	19560	40881	40881					0.04424775879522258
PPFVPIML	8	Unmodified	_PPFVPIML_					0	0	0			REV__ENST00000535530.5_1_12:23716331-23887638:-|nuORF	REV__ENST00000535530.5_1_12:23716331-23887638:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2643127441406	2	457.264425	912.514297	0.24382	0.00011149	-0.44638	-0.00020411	-0.20256	-9.2622E-05	457.2641650505461	75.015	1.0377	75.015	74.731	75.769	0					66	36	2	0	0	0	0.44842	1	19218	19218		6.3541	0	1	515550	+		33530	15682	19560	19561	40882	40882					0.054540065244850666
PPGARRGQR	9	Unmodified	_PPGARRGQR_					0	0	0		ENST00000591127.1_2_19:1230066-1234703:-|nuORF	ENST00000591127.1_2_19:1230066-1234703:-|nuORF	ENST00000591127.1_2_19:1230066-1234703:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2667541503906	2	497.786299	993.558044	0.77491	0.00038574	2.8432	0.0014153	3.6182	0.0018011	497.7877262030389	37.478	0.78075	37.478	37.039	37.82	0					40	27	2	0	0	0	0.2322	1	7738	7738		20.454	6.5476	1	125140			33531	12178	19561	19562	40883	40883					0.06100752065856341
PPGARTRA	8	Unmodified	_PPGARTRA_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2380065917969	2	413.238119	824.461684	-0.048333	-1.9973E-05	0.13934	5.758E-05	0.091006	3.7607E-05	413.2380736623	79.904	0.75507	79.904	79.612	80.367	0					60	27	3	0	0	0	0.44389	1	20776	20776		7.9102	3.1541	1	424110			33532	5953	19562	19563	40884	40884					0.04243184505889985
PPGARTRA	8	Unmodified	_PPGARTRA_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2378845214844	2	413.238119	824.461684	0.25729	0.00010632	-0.16395	-6.7751E-05	0.093336	3.857E-05	413.23796172493314	79.867	0.77231	79.929	79.618	80.391	0.061417					61	28	3	0	0	0	0.44389	2	20698	20698;20748		7.9102	3.1541	1	419980			33533	5953	19562	19563	40885;40886	40885					0.04243184505889985
PPGPRRGA	8	Unmodified	_PPGPRRGA_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.D1819Mfs*70|1|0.11|ENSG00000272333|chr19:35731923-35731941|AGGACCCCCCACTGGACAC/-|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.2276611328125	2	404.232836	806.45112	0.18485	7.4723E-05	0.21043	8.5064E-05	0.39529	0.00015979	404.23288049463207	74.876	1.2303	74.876	74.481	75.711	0					110	43	4	0	0	0	0.45169	1	19319	19319		5.2307	0	1	8319300			33534	8700	19563	19564	40887	40887					0.040152018514731935
PPGPRRGA	8	Unmodified	_PPGPRRGA_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.D1819Mfs*70|1|0.11|ENSG00000272333|chr19:35731923-35731941|AGGACCCCCCACTGGACAC/-|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.227294921875	2	404.232836	806.45112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.371	1	77.371	76.871	77.871	0								0	0	0	0.37078	1	19968	19968		5.2307	0	1				33535	8700	19563	19564	40888	40888					0.040152018514731935
PPGPRRGA	8	Unmodified	_PPGPRRGA_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.D1819Mfs*70|1|0.11|ENSG00000272333|chr19:35731923-35731941|AGGACCCCCCACTGGACAC/-|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2333068847656	2	404.232836	806.45112	-0.147	-5.9424E-05	0.5338	0.00021578	0.38679	0.00015635	404.2330074881037	74.786	1.3482	74.839	74.459	75.807	0.052361					112	48	4	0	0	0	0.45169	2	19131	19131;19292		5.2307	0	1	8557100			33536	8700	19563	19564	40889;40890	40889					0.040152018514731935
PPGPRRGA	8	Unmodified	_PPGPRRGA_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.D1819Mfs*70|1|0.11|ENSG00000272333|chr19:35731923-35731941|AGGACCCCCCACTGGACAC/-|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.22705078125	2	404.232836	806.45112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.356	1	77.412	76.912	77.912	0.055412								0	0	0	0.37078	1	19954	19954		5.2307	0	1				33537	8700	19563	19564	40891	40891					0.040152018514731935
PPGPRRGA	8	Unmodified	_PPGPRRGA_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.D1819Mfs*70|1|0.11|ENSG00000272333|chr19:35731923-35731941|AGGACCCCCCACTGGACAC/-|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2282409667969	2	404.232836	806.45112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.396	1	77.451	76.951	77.951	0.055412								0	0	0	0.37078	1	19966	19966		5.2307	0	1				33538	8700	19563	19564	40892	40892					0.040152018514731935
PPGPRRGA	8	Unmodified	_PPGPRRGA_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.D1819Mfs*70|1|0.11|ENSG00000272333|chr19:35731923-35731941|AGGACCCCCCACTGGACAC/-|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2333068847656	2	404.232836	806.45112	0.17044	6.8896E-05	0.29564	0.00011951	0.46608	0.00018841	404.23291268791104	74.877	1.4311	74.846	74.473	75.904	-0.031479					118	52	4	0	0	0	0.45169	1	19150	19150		5.2307	0	1	9663300			33539	8700	19563	19564	40893	40893					0.040152018514731935
PPGPRRGA	8	Unmodified	_PPGPRRGA_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.D1819Mfs*70|1|0.11|ENSG00000272333|chr19:35731923-35731941|AGGACCCCCCACTGGACAC/-|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	404.232836	806.45112	-0.147	-5.9424E-05	0.5338	0.00021578	0.38679	0.00015635	404.2330074881037	74.786	1.3482	74.839	74.459	75.807	0.052361	-0.014936	0.00015926	NaN	5.2307	112	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8557100			33540	8700	19563	19564							0.040152018514731935
PPGPRRGA	8	Unmodified	_PPGPRRGA_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.D1819Mfs*70|1|0.11|ENSG00000272333|chr19:35731923-35731941|AGGACCCCCCACTGGACAC/-|frameshift_variant	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	404.232836	806.45112	0.17044	6.8896E-05	0.29564	0.00011951	0.46608	0.00018841	404.23291268791104	74.877	1.4311	74.846	74.473	75.904	-0.031479	-0.007812	-3.3283E-05	NaN	5.2307	118	52	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9663300			33541	8700	19563	19564							0.040152018514731935
PPGSVLLETGR	11	Unmodified	_PPGSVLLETGR_					0	0	0		ENST00000537802.5_1_13:111301211-111301460:-|nuORF	ENST00000537802.5_1_13:111301211-111301460:-|nuORF	ENST00000537802.5_1_13:111301211-111301460:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8087158203125	2	563.316763	1124.61897	-0.10169	-5.7282E-05	-0.0083035	-4.6775E-06	-0.10999	-6.1959E-05	563.3164955514704	59.758	0.76795	59.853	59.412	60.18	0.095093					46	27	2	0	0	0	0.31791	1	14438	14438		20.415	5.5763	1	5133700			33542	11693	19564	19565	40894	40894					0.06164799534781196
PPGSVLLETGR	11	Unmodified	_PPGSVLLETGR_					0	0	0		ENST00000537802.5_1_13:111301211-111301460:-|nuORF	ENST00000537802.5_1_13:111301211-111301460:-|nuORF	ENST00000537802.5_1_13:111301211-111301460:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.316763	1124.61897	-0.079395	-4.4725E-05	-0.18213	-0.0001026	-0.26153	-0.00014732	563.3164239464375	59.935	0.58088	59.935	59.621	60.202	0	0.048999	2.2011E-06	NaN	10.8	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5474400			33543	11693	19564	19565							0.06164799534781196
PPGSVLLETGR	11	Unmodified	_PPGSVLLETGR_					0	0	0		ENST00000537802.5_1_13:111301211-111301460:-|nuORF	ENST00000537802.5_1_13:111301211-111301460:-|nuORF	ENST00000537802.5_1_13:111301211-111301460:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	563.316763	1124.61897	0.183	0.00010309	-0.36748	-0.00020701	-0.18447	-0.00010392	563.3163712613417	59.881	0.67815	59.869	59.49	60.168	-0.011486	-0.016644	-0.00020661	NaN	10.8	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5631600			33544	11693	19564	19565							0.06164799534781196
PPGTRLLTVT	10	Unmodified	_PPGTRLLTVT_					0	0	0		ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8	ENSG00000253767|ENST00000398604|PCDHGA8	ENSG00000253767|ENST00000398604|PCDHGA8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.301513671875	2	527.816399	1053.61824	0.47339	0.00024986	0.60292	0.00031823	1.0763	0.00056809	527.8168639839789	21.895	0.58882	21.895	21.487	22.076	0					28	21	2	0	0	0	0.3156	1	3032	3032		6.7232	0.96273	1	209470			33545	8603	19565	19566	40895	40895					0.09358004885712035
PPGVGCYSGFV	11	Unmodified	_PPGVGCYSGFV_					0	0	0			REV__ENST00000561457.2_1_9:139007847-139008147:-|nuORF	REV__ENST00000561457.2_1_9:139007847-139008147:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3479614257812	2	541.75241	1081.49027	0.35128	0.00019031	-1.8245	-0.00098842	-1.4732	-0.00079811	542.2518785503946	29.608	0.23344	29.621	29.481	29.714	0.013474					10	7	2	0	0	0	0.33219	1	5280	5280		3.5965	1.019	1	94271	+		33546	22305	19566	19567	40896	40896					-0.047218786998428186
PPHHLPLF	8	Unmodified	_PPHHLPLF_					0	0	0			REV__ENSG00000070886|ENST00000166244|EPHA8	REV__ENSG00000070886|ENST00000166244|EPHA8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.27740478515625	2	479.268887	956.523222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.461	1	72.433	71.933	72.933	-0.028793								0	0	0	0.35779	1	18459	18459		11.114	3.2043	1		+		33547	13739	19567	19568	40897	40897					0.04322116205173643
PPHTGPALI	9	Unmodified	_PPHTGPALI_					0	0	0		GGT7|p.Q511Lfs*68|1|0.09|ENSG00000131067|chr20:34852210-34852211|-/TCTAGTATAAGGAA|frameshift_variant;ENSG00000131067|ENST00000336431|GGT7	GGT7|p.Q511Lfs*68|1|0.09|ENSG00000131067|chr20:34852210-34852211|-/TCTAGTATAAGGAA|frameshift_variant	GGT7|p.Q511Lfs*68|1|0.09|ENSG00000131067|chr20:34852210-34852211|-/TCTAGTATAAGGAA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7709655761719	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.153	1	86.153	85.653	86.653	0								0	0	0	0.23367	1	22663	22663		11.64	0	1				33548	3541	19568	19569	40898	40898					0.0474610610565378
PPIEGPPRPQR	11	Unmodified	_PPIEGPPRPQR_					0	0	0		ENSG00000175463|ENST00000542590|TBC1D10C;ENST00000529635.5_1_11:67174176-67177222:+|nuORF	ENSG00000175463|ENST00000542590|TBC1D10C	ENSG00000175463|ENST00000542590|TBC1D10C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.8482666015625	2	622.348929	1242.6833	0.21128	0.00013149	-2.6706	-0.0016621	-2.4593	-0.0015306	622.3469479021986	83.094	0.42627	83.167	82.844	83.27	0.07309					27	15	3	0	0	0	0.45108	1	21690	21690		4.5289	0.58447	1	153010			33549	6865	19569	19570	40899	40899					0.071669994115382
PPIENKNTIF	10	Unmodified	_PPIENKNTIF_					0	0	0			REV__ENST00000296218.7_1_1:38032061-38032220:+|nuORF	REV__ENST00000296218.7_1_1:38032061-38032220:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8346557617188	2	586.819138	1171.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.758	1	84.758	84.258	85.258	0								0	0	0	0.37044	1	22231	22231		6.2058	0	1		+		33550	19789	19570	19571	40900	40900					0.04477683677509958
PPIVLPSDGF	10	Unmodified	_PPIVLPSDGF_					0	0	0		nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL;nc|ENSG00000157927|Q96JH8-3|RADIL;ENST00000472999.5_1_7:4839011-4843599:-|nuORF;nc|ENSG00000157927|Q96JH8-2|RADIL	nc|ENSG00000157927|Q96JH8-1|RADIL	nc|ENSG00000157927|Q96JH8-1|RADIL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7944946289062	2	521.2844	1040.55425	0.58808	0.00030656	-0.3086	-0.00016087	0.27948	0.00014569	521.2844800448258	77.189	3.7671	77.245	76.541	80.308	0.05542					402	144	5	0	0	0	0.32673	1	19795	19795		16.942	0	1	21560000			33551	5334	19571	19572	40901	40901					0.0355922472876955
PPKGRGGR	8	Unmodified	_PPKGRGGR_					0	0	0		ENSG00000167615|ENST00000326764|LENG8;nc|ENSG00000167615|Q96PV6-1|LENG8	ENSG00000167615|ENST00000326764|LENG8	ENSG00000167615|ENST00000326764|LENG8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.7460632324219	2	412.746111	823.477669	0.22009	9.0841E-05	-0.26421	-0.00010905	-0.044124	-1.8212E-05	412.74600325622873	74.882	2.0851	74.882	74.225	76.31	0					183	74	4	0	0	0	0.45942	1	19339	19339		2.5775	0	1	13466000			33552	6190	19572	19573	40902	40902					0.05886890742806372
PPKGRGGR	8	Unmodified	_PPKGRGGR_					0	0	0		ENSG00000167615|ENST00000326764|LENG8;nc|ENSG00000167615|Q96PV6-1|LENG8	ENSG00000167615|ENST00000326764|LENG8	ENSG00000167615|ENST00000326764|LENG8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.7460021972656	2	412.746111	823.477669	0.24791	0.00010232	-0.33181	-0.00013695	-0.083899	-3.4629E-05	412.74597539619396	74.779	1.924	74.831	74.236	76.16	0.052361					189	69	4	0	0	0	0.45942	1	19329	19329		2.5775	0	1	13167000			33553	6190	19572	19573	40903	40903					0.05886890742806372
PPKKPALSK	9	Unmodified	_PPKKPALSK_					0	0	0			REV__nc|ENSG00000204469|P48634-2|PRRC2A	REV__nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.64697265625	2	483.310752	964.606951	0.055077	2.6619E-05	-0.12914	-6.2415E-05	-0.074064	-3.5796E-05	483.31080688997724	42.785	0.48747	42.877	42.607	43.095	0.091362					26	17	2	0	0	0	0.25123	1	9353	9353		12.241	2.1667	1	210200	+		33554	18946	19573	19574	40904	40904					0.12323227582226082
PPKLPRSR	8	Unmodified	_PPKLPRSR_					0	0	0		nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1	nc|ENSG00000080839|P28749-2|RBL1	nc|ENSG00000080839|P28749-2|RBL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.282470703125	2	475.798343	949.582134	0.14197	6.7547E-05	0.017713	8.428E-06	0.15968	7.5975E-05	475.7982027134184	27.038	0.59851	27.016	26.813	27.411	-0.021412					39	20	3	0	0	0	0.34367	1	4609	4609		4.3292	0	1	183410			33555	1168	19574	19575	40905	40905					0.10532592499521343
PPKPAVRQRD	10	Unmodified	_PPKPAVRQRD_					0	0	0			REV__ENST00000526156.1_1_11:4107651-4113025:+|nuORF	REV__ENST00000526156.1_1_11:4107651-4113025:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.8115234375	2	582.335821	1162.65709	0.031471	1.8327E-05	0.61049	0.00035551	0.64196	0.00037384	582.3360510980168	15.426	0.50017	15.426	15.154	15.654	0					26	16	2	0	0	0	0.32132	1	943	943		1.4819	0.28856	1	69246	+		33556	17376	19575	19576	40906	40906					0.0822673024008509
PPKRMPPH	8	Unmodified	_PPKRMPPH_					0	0	0			REV__ENST00000547871.1_1_12:50294984-50296613:-|nuORF	REV__ENST00000547871.1_1_12:50294984-50296613:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2794189453125	2	480.265822	958.517091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.196	1	13.097	12.597	13.597	-0.099291								0	0	0	0.37664	1	354	354		2.5775	1.7838	1		+		33557	22185	19576	19577	40907	40907					0.036172747020145835
PPKRRGGG	8	Unmodified	_PPKRRGGG_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.745849609375	2	412.746111	823.477669	0.22009	9.0841E-05	-0.26421	-0.00010905	-0.044124	-1.8212E-05	412.74600325622873	74.882	2.0851	74.882	74.225	76.31	0					183	74	4	0	0	0	0.4419	1	19395	19395		8.5933	3.3626	1	13466000			33558	4458	19577	19578	40908	40908					0.05886890742817741
PPKRRGGG	8	Unmodified	_PPKRRGGG_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.7460632324219	2	412.746111	823.477669	0.28315	0.00011687	-0.13557	-5.5956E-05	0.14758	6.0914E-05	412.74603329770355	72.153	0.89291	72.126	71.793	72.686	-0.027275					66	31	3	0	0	0	0.4419	1	18368	18368		8.5933	3.3626	1	594550			33559	4458	19577	19578	40909	40909					0.05886890742817741
PPKRRGGG	8	Unmodified	_PPKRRGGG_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	412.746111	823.477669	0.036992	1.5268E-05	0.10683	4.4093E-05	0.14382	5.9361E-05	412.74615030293336	72.182	0.81324	72.182	71.799	72.613	0	0.034871	0.00012738	NaN	8.5933	60	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	611780			33560	4458	19577	19578							0.05886890742817741
PPKRRGGG	8	Unmodified	_PPKRRGGG_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	412.746111	823.477669	0.37411	0.00015441	-0.15893	-6.5597E-05	0.21518	8.8815E-05	412.7460415616571	72.076	0.87508	72.133	71.783	72.658	0.056572	-0.01424	-9.1996E-05	NaN	8.5933	69	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	692720			33561	4458	19577	19578							0.05886890742817741
PPKRRGGG	8	Unmodified	_PPKRRGGG_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	412.746111	823.477669	0.4684	0.00019333	-0.49515	-0.00020437	-0.026747	-1.104E-05	412.7459049688291	74.883	1.8953	74.851	74.294	76.189	-0.031487	-0.0036137	-0.00010362	NaN	8.5933	182	68	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14799000			33562	4458	19577	19578							0.05886890742817741
PPLAESIT	8	Unmodified	_PPLAESIT_					0	0	0		ENST00000553850.1_1_14:50120706-50120958:-|nuORF;ENST00000554377.1_1_14:50116973-50120958:-|nuORF;nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2	ENST00000553850.1_1_14:50120706-50120958:-|nuORF	ENST00000553850.1_1_14:50120706-50120958:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.9084167480469	2	414.229094	826.443634	-0.16498	-6.8339E-05	-4.1805	-0.0017317	-4.3455	-0.0018	414.2279719463709	23.836	0.1477	23.836	23.769	23.917	0					5	4	2	0	0	0	0.34218	1	3579	3579		5.2307	2.3415	1	10857			33563	1600	19578	19579	40910	40910					0.023470047405112382
PPLAIPSAKP	10	Unmodified	_PPLAIPSAKP_					0	0	0		nc|ENSG00000100722|Q6PJT7-10|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.8030090332031	2	495.80276	989.590967	0.44976	0.00022299	0.54022	0.00026784	0.98998	0.00049084	495.80296765546035	68.49	0.70052	68.49	68.25	68.951	0					62	25	3	0	0	0	0.37454	1	17273	17273		8.1555	0.24537	1	1515200			33564	12618	19579	19580	40911	40911					0.09575521345323068
PPLAIPSAKP	10	Unmodified	_PPLAIPSAKP_					0	0	0		nc|ENSG00000100722|Q6PJT7-10|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.80303955078125	2	495.80276	989.590967	0.33226	0.00016473	0.65046	0.0003225	0.98272	0.00048723	495.80299945120834	68.44	0.72363	68.512	68.24	68.964	0.071938					69	26	4	0	0	0	0.37454	1	17252	17252		8.1555	0.24537	1	1524900			33565	12618	19579	19580	40912	40912					0.09575521345323068
PPLALRPPTR	10	Unmodified	_PPLALRPPTR_					0	0	0		ENST00000368921.4_1_1:151031209-151031551:+|nuORF	ENST00000368921.4_1_1:151031209-151031551:+|nuORF	ENST00000368921.4_1_1:151031209-151031551:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.8134765625	2	559.345658	1116.67676	0.080431	4.4989E-05	-0.52206	-0.00029201	-0.44163	-0.00024702	559.3455630728564	22.754	0.37324	22.754	22.563	22.936	0					18	12	2	0	0	0	0.32033	1	3252	3252		3.5965	0	1	41716			33566	9773	19580	19581	40913	40913					0.12309106250813784
PPLCLTWF	8	Unmodified	_PPLCLTWF_					0	0	0		ENST00000350499.6_1_9:135765358-135765451:+|nuORF	ENST00000350499.6_1_9:135765358-135765451:+|nuORF	ENST00000350499.6_1_9:135765358-135765451:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2489929199219	2	488.751682	975.48881	0.33162	0.00016208	1.635	0.00079909	1.9666	0.00096117	488.75268797496693	90.614	0.47829	90.614	90.386	90.864	0					67	38	2	0	0	0	0.34319	1	24037	24037		5.7604	0.52976	1	223700			33567	9575	19581	19582	40914	40914					8.532002061656385E-05
PPLFTLIV	8	Unmodified	_PPLFTLIV_					0	0	0			REV__ENSG00000165186|ENST00000379361|PTCHD1	REV__ENSG00000165186|ENST00000379361|PTCHD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2695007324219	2	450.283672	898.552791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.256	1	86.256	85.756	86.756	0								0	0	0	0.37664	1	22694	22694		2.5775	0	1		+		33568	17215	19582	19583	40915	40915					0.09945635430665334
PPLHLRRFFL	10	Unmodified	_PPLHLRRFFL_					0	0	0			REV__ENST00000294753.8_1_1:247493325-247494987:-|nuORF	REV__ENST00000294753.8_1_1:247493325-247494987:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.595947265625	3	432.596025	1294.76625	-0.2273	-9.8328E-05	-0.79412	-0.00034353	-1.0214	-0.00044186	432.59547973783856	41.476	1.2634	41.476	40.388	41.651	0					136	46	4	0	0	0	0.3994	1	8952	8952		3.5871	0.95582	1	1987400	+		33569	19774	19583	19584	40916	40916					0.13065360930204406
PPLHLRRFFL	10	Unmodified	_PPLHLRRFFL_					0	0	0			REV__ENST00000294753.8_1_1:247493325-247494987:-|nuORF	REV__ENST00000294753.8_1_1:247493325-247494987:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.595947265625	3	432.596025	1294.76625	-0.276	-0.0001194	-0.072555	-3.1387E-05	-0.34855	-0.00015078	432.5959711133373	42.257	1.71	42.257	41.757	43.467	0					111	64	2	0	0	0	0.3213	1	9168	9168		0.69767	0.69767	1	1560800	+		33570	19774	19583	19584	40917	40917					0.13065360930204406
PPLHLRRFFL	10	Unmodified	_PPLHLRRFFL_					0	0	0			REV__ENST00000294753.8_1_1:247493325-247494987:-|nuORF	REV__ENST00000294753.8_1_1:247493325-247494987:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.59576416015625	3	432.596025	1294.76625	-0.020882	-9.0334E-06	-0.72003	-0.00031148	-0.74091	-0.00032052	432.59545405057963	41.052	1.3144	41.142	40.252	41.566	0.090248					131	48	4	0	0	0	0.39782	1	8803	8803		3.8763	0.28927	1	1587900	+		33571	19774	19583	19584	40918	40918					0.13065360930204406
PPLHLRRFFL	10	Unmodified	_PPLHLRRFFL_					0	0	0			REV__ENST00000294753.8_1_1:247493325-247494987:-|nuORF	REV__ENST00000294753.8_1_1:247493325-247494987:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	432.596025	1294.76625	0.013945	6.0325E-06	-0.28086	-0.0001215	-0.26692	-0.00011547	432.5958252456744	41.806	1.509	41.896	41.738	43.247	0.090248	-0.074612	-9.9848E-05	NaN	0.69767	144	56	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2519600	+		33572	19774	19583	19584							0.13065360930204406
PPLIDIQEAA	10	Unmodified	_PPLIDIQEAA_					0	0	0		ENST00000311597.9_1_22:50523869-50523992:-|nuORF	ENST00000311597.9_1_22:50523869-50523992:-|nuORF	ENST00000311597.9_1_22:50523869-50523992:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.254638671875	2	533.792589	1065.57063	0.16575	8.8477E-05	-2.696	-0.0014391	-2.5302	-0.0013506	533.7911053713389	13.798	0.16026	13.798	13.687	13.847	0					9	5	2	0	0	0	0.3198	1	545	545		4.3292	0	1	22082			33573	9316	19584	19585	40919	40919					0.04046305894848956
PPLIKGQFRR	10	Unmodified	_PPLIKGQFRR_					0	0	0			REV__ENST00000465856.5_1_6:26422331-26423690:+|nuORF	REV__ENST00000465856.5_1_6:26422331-26423690:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3710327148438	2	606.372207	1210.72986	0.27355	0.00016588	-3.5952	-0.00218	-3.3216	-0.0020141	606.8718988003333	107.47	0.046005	107.46	107.42	107.47	-0.0085754					10	6	2	0	0	0	0.32132	1	28328	28328		1.4819	0	1	1819400	+		33574	21278	19585	19586	40920	40920					0.13292484033490837
PPLIQSNVVP	10	Unmodified	_PPLIQSNVVP_					0	0	0			REV__ENSG00000152580|ENST00000282466|IGSF10	REV__ENSG00000152580|ENST00000282466|IGSF10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.311767578125	2	532.310949	1062.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.95	1	112.97	112.47	113.47	0.014824								0	0	0	0.37807	1	29392	29392		2.9952	0.26005	1		+		33575	16585	19586	19587	40921	40921					0.0785460251142922
PPLLALLL	8	Unmodified	_PPLLALLL_					0	0	0			REV__ENSG00000141736|ENST00000269571|ERBB2	REV__ENSG00000141736|ENST00000269571|ERBB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.2940368652344	2	425.29404	848.573526	-0.33682	-0.00014325	0.29424	0.00012514	-0.042578	-1.8108E-05	425.29438247525235	96.693	1.8874	96.693	96.228	98.115	0					566	190	5	0	0	0	0.35781	1	25760	25760		24.21	0	1	11314000	+		33576	16092	19587	19588	40922	40922					0.1431822581033657
PPLLFSLL	8	Unmodified	_PPLLFSLL_					0	0	0			REV__ENST00000307271.3_1_7:150147778-150147952:+|nuORF	REV__ENST00000307271.3_1_7:150147778-150147952:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2696533203125	2	450.283672	898.552791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.11	1	100.1	99.605	100.6	-0.006897								0	0	0	0.35985	1	26794	26794		10.183	0	1		+		33577	19866	19588	19589	40923	40923					0.09945635430653965
PPLLHPGQLP	10	Unmodified	_PPLLHPGQLP_					0	0	0		ENST00000373307.5_1_10:71164777-71168747:-|nuORF	ENST00000373307.5_1_10:71164777-71168747:-|nuORF	ENST00000373307.5_1_10:71164777-71168747:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2547607421875	2	534.813659	1067.61277	-0.055496	-2.968E-05	-3.915	-0.0020938	-3.9705	-0.0021235	534.811648647592	13.853	0.21502	13.748	13.658	13.873	-0.10466					10	7	2	0	0	0	0.318	1	580	580		7.2892	0.56607	1	20400			33578	9864	19589	19590	40924	40924					0.08166326093896714
PPLLIKLVEAI	11	Unmodified	_PPLLIKLVEAI_					0	0	0		ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1;ENST00000517412.1_1_5:67522458-67569396:+|nuORF	ENSG00000145675|ENST00000521381|PIK3R1	ENSG00000145675|ENST00000521381|PIK3R1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.8384399414062	2	603.397025	1204.7795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.941	1	92.032	91.532	92.532	0.090668								0	0	0	0.38203	1	24427	24427		0.30703	0	1				33579	4662	19590	19591	40925	40925					0.18529754198948467
PPLLLSPL	8	Unmodified	_PPLLLSPL_					0	0	0			REV__ENSG00000078070|ENST00000265594|MCCC1	REV__ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.27593994140625	2	425.275847	848.537141	-0.20833	-8.8596E-05	0.40939	0.0001741	0.20106	8.5507E-05	425.27590426454236	80.387	0.75189	80.452	80.131	80.883	0.065094					66	28	3	0	0	0	0.39956	1	20972	20972		19.439	0	1	911100	+		33580	13851	19591	19592	40926	40926					0.10681348913624333
PPLMIPVF	8	Unmodified	_PPLMIPVF_					0	0	0		ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2644348144531	2	457.264425	912.514297	0.16498	7.5439E-05	-0.16407	-7.5024E-05	0.00090891	4.1561E-07	457.26424841953207	71.499	1.9033	71.499	70.847	72.75	0					207	68	4	0	0	0	0.44842	8	18094	18094;18181;18228;18326;18369;18413;18459;18508		6.3541	2.0249	1	2529800			33581	3793	19592	19593	40927;40928;40929;40930;40931;40932;40933;40934	40927					0.05454006524507804
PPLMIPVF	8	Unmodified	_PPLMIPVF_					0	0	0		ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.26446533203125	2	457.264425	912.514297	0.094187	4.3068E-05	-0.059525	-2.7219E-05	0.034662	1.585E-05	457.2642918314604	73.069	2.092	73.069	72.639	74.731	0					160	73	4	0	0	0	0.44842	9	18562	18562;18607;18660;18701;18708;18805;18855;18913;19058		6.3541	6.3541	1	2003800			33582	3793	19592	19593	40935;40936;40937;40938;40939;40940;40941;40942;40943	40935					0.05454006524507804
PPLMIPVF	8	Unmodified	_PPLMIPVF_					0	0	0		ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2643737792969	2	457.264425	912.514297	0.20539	9.3919E-05	-0.23803	-0.00010884	-0.032634	-1.4922E-05	457.26422440151435	71.455	1.9166	71.511	70.875	72.792	0.056572					223	69	4	0	0	0	0.44842	6	18182	18182;18231;18282;18373;18422;18512		6.3541	2.0249	1	2592300			33583	3793	19592	19593	40944;40945;40946;40947;40948;40949	40944					0.05454006524507804
PPLMIPVF	8	Unmodified	_PPLMIPVF_					0	0	0		ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2643737792969	2	457.264425	912.514297	0.071582	3.2732E-05	-0.030489	-1.3941E-05	0.041094	1.8791E-05	457.2643051209287	72.992	1.9065	73.046	72.707	74.614	0.053833					169	67	4	0	0	0	0.43455	9	18728	18553;18593;18636;18728;18779;18888;18937;19004;19050		11.114	6.3541	1	1798100			33584	3793	19592	19593	40950;40951;40952;40953;40954;40955;40956;40957;40958	40953					0.05454006524507804
PPLMIPVF	8	Unmodified	_PPLMIPVF_					0	0	0		ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2643737792969	2	457.264425	912.514297	0.16002	7.3172E-05	-0.21959	-0.00010041	-0.059568	-2.7238E-05	457.2642713696472	74.935	1.2487	74.987	74.612	75.861	0.052361					84	45	2	0	0	0	0.44842	1	19190	19190		6.3541	6.3541	1	499980			33585	3793	19592	19593	40959	40959					0.05454006524507804
PPLMIPVF	8	Unmodified	_PPLMIPVF_					0	0	0		ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2643737792969	2	457.264425	912.514297	0.095099	4.3486E-05	-0.53319	-0.00024381	-0.4381	-0.00020033	457.2641488394384	69.584	1.8548	69.562	68.814	70.668	-0.022087					121	66	3	0	0	0	0.44842	2	17517	17517;17566		6.3541	3.0728	1	510560			33586	3793	19592	19593	40960;40961	40960					0.05454006524507804
PPLMIPVF	8	Unmodified	_PPLMIPVF_					0	0	0		ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2643737792969	2	457.264425	912.514297	0.25545	0.00011681	-0.2301	-0.00010521	0.025358	1.1595E-05	457.264237516888	71.611	2.0764	71.584	70.663	72.74	-0.027275					256	74	5	0	0	0	0.44842	8	18093	18093;18139;18229;18269;18360;18412;18465;18515		6.3541	3.0728	1	2893400			33587	3793	19592	19593	40962;40963;40964;40965;40966;40967;40968;40969	40962					0.05454006524507804
PPLMIPVF	8	Unmodified	_PPLMIPVF_					0	0	0		ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2643737792969	2	457.264425	912.514297	0.23629	0.00010805	-0.26447	-0.00012093	-0.028174	-1.2883E-05	457.26421229697945	73.058	1.9871	73.028	72.657	74.644	-0.029305					175	71	4	0	0	0	0.44842	8	18608	18608;18660;18701;18717;18809;18855;18909;18977		6.3541	6.3541	1	2046400			33588	3793	19592	19593	40970;40971;40972;40973;40974;40975;40976;40977	40970					0.05454006524507804
PPLMIPVF	8	Unmodified	_PPLMIPVF_					0	0	0		ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	ENST00000535530.5_1_12:23716331-23887638:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.26373291015625	2	457.264425	912.514297	0.4095	0.00018725	-0.47773	-0.00021845	-0.068227	-3.1198E-05	457.264138726996	74.933	1.1604	74.901	74.642	75.803	-0.031487					77	42	2	0	0	0	0.44842	1	19197	19197		6.3541	1.5981	1	338160			33589	3793	19592	19593	40978	40978					0.05454006524507804
PPLNKKRNAG	10	Unmodified	_PPLNKKRNAG_					0	0	0			REV__nc|ENSG00000188827|Q8IY92-2|SLX4	REV__nc|ENSG00000188827|Q8IY92-2|SLX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3536987304688	2	547.825089	1093.63563	0.55066	0.00030167	-0.58542	-0.00032071	-0.034755	-1.904E-05	547.8251491834285	51.765	0.68318	51.812	51.595	52.278	0.046574					38	24	2	0	0	0	0.3156	1	12067	12067		6.7232	0	1	276460	+		33590	18575	19593	19594	40979	40979					0.0925534521136342
PPLPPEEPRR	10	Unmodified	_PPLPPEEPRR_					0	0	0			REV__ENST00000374140.6_1_9:116285268-116345734:+|nuORF	REV__ENST00000374140.6_1_9:116285268-116345734:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8113403320312	2	594.330205	1186.64586	0.10519	6.2517E-05	-3.8149	-0.0022673	-3.7097	-0.0022048	594.3278462160903	13.4	0.14014	13.301	13.249	13.389	-0.099291					7	4	2	0	0	0	0.32009	1	440	440		3.9444	1.3669	1	21942	+		33591	19945	19594	19595	40980	40980					0.059999081459409354
PPLPPEEPRR	10	Unmodified	_PPLPPEEPRR_					0	0	0			REV__ENST00000374140.6_1_9:116285268-116345734:+|nuORF	REV__ENST00000374140.6_1_9:116285268-116345734:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	594.330205	1186.64586	0.1162	6.9064E-05	-2.8109	-0.0016706	-2.6946	-0.0016015	594.3282205160504	13.339	0.20034	13.339	13.227	13.427	0	0.019398	0.00064224	NaN	3.9444	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30826	+		33592	19945	19594	19595							0.059999081459409354
PPLPTYTYT	9	Unmodified	_PPLPTYTYT_					0	0	0			REV__ENST00000264658.10_1_17:37417522-37417675:-|nuORF	REV__ENST00000264658.10_1_17:37417522-37417675:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3064575195312	2	526.768583	1051.52261	0.30766	0.00016207	0.94303	0.00049676	1.2507	0.00065883	527.2702779228217	25.015	0.38517	24.959	24.748	25.134	-0.055931					17	13	2	0	0	0	0.25879	1	3926	3926		4.756	0	1	41485	+		33593	19642	19595	19596	40981	40981					-0.0010876802518851036
PPLPTYTYT	9	Unmodified	_PPLPTYTYT_					0	0	0			REV__ENST00000264658.10_1_17:37417522-37417675:-|nuORF	REV__ENST00000264658.10_1_17:37417522-37417675:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3062133789062	2	526.768583	1051.52261	0.13135	6.9192E-05	0.89834	0.00047322	1.0297	0.00054241	527.2700370872243	24.931	0.30172	24.9	24.796	25.098	-0.03141					13	9	2	0	0	0	0.25879	1	3942	3942		4.756	0	1	71952	+		33594	19642	19595	19596	40982	40982					-0.0010876802518851036
PPLRLVPC	8	Unmodified	_PPLRLVPC_					0	0	0			REV__ENST00000390298.2_1_22:22749706-22749778:+|nuORF	REV__ENST00000390298.2_1_22:22749706-22749778:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.7658386230469	2	447.765123	893.515694	0.21449	9.6042E-05	0.60148	0.00026932	0.81597	0.00036536	447.7653067114119	80.528	0.87998	80.528	80.267	81.147	0					87	39	3	0	0	0	0.45942	1	20899	20899		2.5775	0	1	1205900	+		33595	20580	19596	19597	40983	40983					0.06467640613254844
PPLRLVPC	8	Unmodified	_PPLRLVPC_					0	0	0			REV__ENST00000390298.2_1_22:22749706-22749778:+|nuORF	REV__ENST00000390298.2_1_22:22749706-22749778:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.76556396484375	2	447.765123	893.515694	0.25298	0.00011327	0.36914	0.00016529	0.62212	0.00027856	447.7652088302972	80.597	0.99828	80.57	80.204	81.202	-0.026817					76	38	3	0	0	0	0.45942	2	20896	20896;20992		2.5775	0	1	1286100	+		33596	20580	19596	19597	40984;40985	40984					0.06467640613254844
PPLSLTVLWLL	11	Unmodified	_PPLSLTVLWLL_					0	0	0			REV__ENST00000461864.5_1_3:136580731-136580812:-|nuORF	REV__ENST00000461864.5_1_3:136580731-136580812:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.3895874023438	2	626.389199	1250.76385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.39	1	104.39	103.89	104.89	0.0018463								0	0	0	0.38114	1	27728	27728		1.3295	0	1		+		33597	21227	19597	19598	40986	40986					0.14849467681892747
PPLSLTVLWLL	11	Unmodified	_PPLSLTVLWLL_					0	0	0			REV__ENST00000461864.5_1_3:136580731-136580812:-|nuORF	REV__ENST00000461864.5_1_3:136580731-136580812:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.3939819335938	2	626.389199	1250.76385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.59	1	104.6	104.1	105.1	0.0018463								0	0	0	0.38114	1	27772	27772		1.3295	0	1		+		33598	21227	19597	19598	40987	40987					0.14849467681892747
PPLSLTVLWLL	11	Unmodified	_PPLSLTVLWLL_					0	0	0			REV__ENST00000461864.5_1_3:136580731-136580812:-|nuORF	REV__ENST00000461864.5_1_3:136580731-136580812:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.3900756835938	2	626.389199	1250.76385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.71	1	104.71	104.21	105.21	0.0011444								0	0	0	0.38114	1	27818	27818		1.3295	0	1		+		33599	21227	19597	19598	40988	40988					0.14849467681892747
PPLSPHKLSI	10	Unmodified	_PPLSPHKLSI_					0	0	0		nc|ENSG00000162373|Q7L4P6-2|BEND5;ENSG00000162373|ENST00000371833|BEND5	nc|ENSG00000162373|Q7L4P6-2|BEND5	nc|ENSG00000162373|Q7L4P6-2|BEND5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3155517578125	2	544.826766	1087.63898	0.51187	0.00027888	-2.8912	-0.0015752	-2.3794	-0.0012963	544.8245020451586	90.482	0.47578	90.482	90.184	90.659	0					54	34	2	0	0	0	0.39009	1	23947	23947		5.2969	0.54088	1	177350			33600	5562	19598	19599	40989	40989					0.09866595265384603
PPLSPIRFAA	10	Unmodified	_PPLSPIRFAA_					0	0	0		ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.254638671875	2	534.813659	1067.61277	0.16314	8.7249E-05	-3.4798	-0.001861	-3.3166	-0.0017738	534.8117988614978	13.754	0.13354	13.754	13.714	13.847	0					7	4	2	0	0	0	0.3198	1	545	545		4.3292	0	1	23730			33601	7052	19599	19600	40990	40990					0.08166326093896714
PPLSPYFK	8	Unmodified	_PPLSPYFK_					0	0	0		ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.76300048828125	2	474.763104	947.511654	-0.024619	-1.1688E-05	0.086416	4.1027E-05	0.061796	2.9339E-05	474.7629877435732	76.225	0.65941	76.225	75.957	76.617	0					43	23	3	0	0	0	0.31518	1	19613	19613		29.082	7.3349	1	358910			33602	6494	19600	19601	40991	40991					0.03579874391186877
PPLSPYFK	8	Unmodified	_PPLSPYFK_					0	0	0		ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7441101074219	2	474.763104	947.511654	0.28837	0.00013691	-0.18444	-8.7563E-05	0.10394	4.9346E-05	474.76294779112675	75.096	0.75631	75.148	74.81	75.566	0.052361					41	27	2	0	0	0	0.020768	1	19283	19283		128.37	50.216	1	187920			33603	6494	19600	19601	40992	40992					0.03579874391186877
PPLSPYFK	8	Unmodified	_PPLSPYFK_					0	0	0		ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.7444152832031	2	474.763104	947.511654	0.48203	0.00022885	-0.23027	-0.00010932	0.25176	0.00011953	474.76282015708927	75.2	0.71987	75.168	74.838	75.558	-0.031479					41	26	2	0	0	0	0.020768	1	19319	19319		115.69	37.543	1	172930			33604	6494	19600	19601	40993	40993					0.03579874391186877
PPLVLPVL	8	Unmodified	_PPLVLPVL_					0	0	0		ENSG00000140470|ENST00000268070|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.9330139160156	2	424.286214	846.557876	0.14831	6.2924E-05	-0.12724	-5.3986E-05	0.021066	8.938E-06	424.28610007678753	85.653	0.31429	85.653	85.504	85.819	0					16	11	2	0	0	0	0.34147	1	22483	22483		11.114	0	1	98988			33605	4307	19601	19602	40994	40994					0.12845939293276842
PPLVLPVL	8	Unmodified	_PPLVLPVL_					0	0	0		ENSG00000140470|ENST00000268070|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.9329528808594	2	424.286214	846.557876	0.066387	2.8167E-05	-0.016146	-6.8507E-06	0.05024	2.1316E-05	424.28610365333907	85.571	0.31964	85.656	85.462	85.782	0.084251					19	11	2	0	0	0	0.33618	1	22471	22471		11.114	0	1	108050			33606	4307	19601	19602	40995	40995					0.12845939293276842
PPLVLPVL	8	Unmodified	_PPLVLPVL_					0	0	0		ENSG00000140470|ENST00000268070|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.93304443359375	2	424.286214	846.557876	0.17834	7.5669E-05	-0.54028	-0.00022923	-0.36194	-0.00015357	424.28589828889704	85.558	0.41812	85.549	85.43	85.848	-0.0090027					19	14	2	0	0	0	0.33618	1	22477	22477		11.114	0	1	78062			33607	4307	19601	19602	40996	40996					0.12845939293276842
PPNPLTRK	8	Unmodified	_PPNPLTRK_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.3032531738281	2	461.777077	921.5396	-0.34703	-0.00016025	0.55768	0.00025752	0.21065	9.7272E-05	461.77723918139674	39.087	0.85299	39.087	38.816	39.669	0					62	30	3	0	0	0	0.34272	1	8373	8373		7.9102	3.1541	1	1117000	+		33608	18449	19602	19603	40997	40997					0.0756919737127646
PPNPLTRK	8	Unmodified	_PPNPLTRK_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	461.777077	921.5396	-0.081223	-3.7507E-05	0.38908	0.00017967	0.30786	0.00014216	461.7771368078027	39.006	0.71174	39.099	38.836	39.548	0.09267	0.0057272	-8.0775E-05	NaN	7.9102	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1454300	+		33609	18449	19602	19603							0.0756919737127646
PPNSGFLL	8	Unmodified	_PPNSGFLL_					0	0	0		ENST00000523547.1_1_8:117878983-117886562:-|nuORF	ENST00000523547.1_1_8:117878983-117886562:-|nuORF	ENST00000523547.1_1_8:117878983-117886562:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.26824951171875	2	422.731803	843.449054	0.27649	0.00011688	-0.52026	-0.00021993	-0.24377	-0.00010305	422.73147653249714	36.988	0.54072	37.081	36.79	37.331	0.093014					21	19	2	0	0	0	0.32435	1	7564	7564		11.64	3.7301	1	82611			33610	11512	19603	19604	40998	40998					0.021067283229854183
PPNSGFLL	8	Unmodified	_PPNSGFLL_					0	0	0		ENST00000523547.1_1_8:117878983-117886562:-|nuORF	ENST00000523547.1_1_8:117878983-117886562:-|nuORF	ENST00000523547.1_1_8:117878983-117886562:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	422.731803	843.449054	0.023157	9.7894E-06	-3.1695	-0.0013399	-3.1464	-0.0013301	422.7317831897838	37.31	0.24715	37.398	37.305	37.552	0.08741	0.15818	-0.0021832	NaN	11.64	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51431			33611	11512	19603	19604							0.021067283229854183
PPNSLTMF	8	Unmodified	_PPNSLTMF_					0	0	0			REV__nc|ENSG00000153253|Q9NY46-4|SCN3A	REV__nc|ENSG00000153253|Q9NY46-4|SCN3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.2561340332031	2	453.723121	905.431689	0.12459	5.653E-05	-4.1244	-0.0018713	-3.9998	-0.0018148	453.72139661823934	23.177	0.41058	23.132	23.033	23.444	-0.044867					19	14	2	0	0	0	0.34131	1	3382	3382		12.532	4.6214	1	30535	+		33612	16620	19604	19605	40999	40999					-0.02480935274309104
PPPAAAPTI	9	Unmodified	_PPPAAAPTI_					0	0	0		ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.922119140625	2	417.739628	833.464704	0.18898	7.8946E-05	-0.17744	-7.4125E-05	0.011541	4.8212E-06	417.7394314224972	39.328	0.55005	39.428	39.155	39.705	0.099407					24	19	2	0	0	0	0.22596	1	8319	8319		21.747	3.6117	1	216580			33613	6186	19605	19606	41000	41000					0.04131014840027092
PPPAISLNAP	10	Unmodified	_PPPAISLNAP_					0	0	0		ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.29229736328125	2	488.776742	975.538931	0.0066377	3.2443E-06	-0.21997	-0.00010751	-0.21333	-0.00010427	488.7763318042541	30.261	0.53582	30.288	30.019	30.555	0.027157					38	18	3	0	0	0	0.33817	1	5465	5465		14.838	1.7958	1	254230			33614	6139	19606	19607	41001	41001					0.05018357931544415
PPPELKRS	8	Unmodified	_PPPELKRS_					0	0	0			REV__ENSG00000137936|ENST00000260502|BCAR3	REV__ENSG00000137936|ENST00000260502|BCAR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.93756103515625	2	462.269084	922.523616	0.3199	0.00014788	1.2079	0.00055839	1.5278	0.00070627	462.2693586824074	20.615	0.64668	20.505	20.277	20.923	-0.11003					30	22	2	0	0	0	0.34039	1	2551	2551		15.847	4.2069	1	63715	+		33615	15892	19607	19608	41002	41002					0.0592549113438281
PPPEPQQTIM	10	Unmodified	_PPPEPQQTIM_					0	0	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.8450317382812	2	569.284074	1136.5536	0.046563	2.6507E-05	0.98654	0.00056162	1.0331	0.00058813	569.2847219103172	33.993	0.78131	34.06	33.852	34.633	0.066704					47	27	2	0	0	0	0.31358	1	6632	6632		13.906	6.6168	1	268770			33616	6191	19608	19609	41003	41003					-0.009219379826163276
PPPEPQQTIM	10	Unmodified	_PPPEPQQTIM_					0	0	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.284074	1136.5536	-0.098729	-5.6205E-05	1.1579	0.00065916	1.0591	0.00060296	569.2849657417739	34.476	0.67329	34.476	34.023	34.697	0	0.17281	0.00015186	NaN	13.906	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228130			33617	6191	19608	19609							-0.009219379826163276
PPPFLSFVGQ	10	Unmodified	_PPPFLSFVGQ_					0	0	0			REV__ENST00000567573.5_1_15:36871929-36940867:+|nuORF	REV__ENST00000567573.5_1_15:36871929-36940867:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7930297851562	2	544.792392	1087.57023	0.46456	0.00025309	0.39604	0.00021576	0.8606	0.00046885	544.7926620560944	68.112	2.4408	68.112	67.479	69.92	0					263	88	6	0	0	0	0.039295	2	17142	17142;17189		61.357	9.0891	1	20208000	+		33618	22382	19609	19610	41004;41005	41004					0.0299493096565584
PPPFLSFVGQ	10	Unmodified	_PPPFLSFVGQ_					0	0	0			REV__ENST00000567573.5_1_15:36871929-36940867:+|nuORF	REV__ENST00000567573.5_1_15:36871929-36940867:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7928466796875	2	544.792392	1087.57023	0.64455	0.00035115	0.19643	0.00010702	0.84098	0.00045816	544.7925558762294	68.127	5.2459	68.107	67.448	72.694	-0.019157					359	188	6	0	0	0	0.039295	2	17184	17088;17184		61.357	14.294	1	21422000	+		33619	22382	19609	19610	41006;41007	41007					0.0299493096565584
PPPFMTTSF	9	Unmodified	_PPPFMTTSF_					0	0	0		ENST00000396954.7_1_5:52405227-52405491:-|nuORF	ENST00000396954.7_1_5:52405227-52405491:-|nuORF	ENST00000396954.7_1_5:52405227-52405491:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.9854125976562	2	512.744053	1023.47355	0.12493	6.406E-05	-0.39248	-0.00020124	-0.26754	-0.00013718	512.7439394659896	95.207	1.5512	95.207	94.188	95.739	0					181	144	2	0	0	0	0.25879	1	25222	25222		4.756	1.8668	1	144440			33620	10127	19610	19611	41008	41008					-0.03724379585787574
PPPFMTTSF	9	Unmodified	_PPPFMTTSF_					0	0	0		ENST00000396954.7_1_5:52405227-52405491:-|nuORF	ENST00000396954.7_1_5:52405227-52405491:-|nuORF	ENST00000396954.7_1_5:52405227-52405491:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.9854736328125	2	512.744053	1023.47355	0.29973	0.00015368	-0.30155	-0.00015462	-0.0018161	-9.3117E-07	512.7439279045041	95.266	1.5794	95.264	94.19	95.77	-0.0020142					205	145	2	0	0	0	0.25879	1	25133	25133		4.756	1.8668	1	200920			33621	10127	19610	19611	41009	41009					-0.03724379585787574
PPPGRVETWP	10	Unmodified	_PPPGRVETWP_					0	0	0			REV__ENST00000505569.5_1_5:176948978-176952218:-|nuORF	REV__ENST00000505569.5_1_5:176948978-176952218:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.7933349609375	2	568.298373	1134.58219	0.29866	0.00016973	-1.803	-0.0010247	-1.5044	-0.00085493	568.2972177029122	32.876	0.70472	32.876	32.44	33.145	0					40	24	2	0	0	0	0.31515	1	6333	6333		12.241	0.74595	1	279380	+		33622	16325	19611	19612	41010	41010					0.020285477088464177
PPPHHNLAH	9	Unmodified	_PPPHHNLAH_					0	0	0			REV__nc|ENSG00000138286|Q96BN6-2|FAM149B1	REV__nc|ENSG00000138286|Q96BN6-2|FAM149B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2781982421875	2	510.262125	1018.5097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.605	1	19.489	18.989	19.989	-0.11592								0	0	0	0.26334	1	2287	2287		2.0598	0	1		+		33623	15916	19612	19613	41011	41011					0.0011825842593680136
PPPHTRFWEP	10	Unmodified	_PPPHTRFWEP_					0	0	0			REV__ENST00000252674.8_2_19:6212397-6212727:-|nuORF	REV__ENST00000252674.8_2_19:6212397-6212727:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.57513427734375	3	421.88049	1262.61964	-0.21083	-8.8945E-05	-0.44	-0.00018563	-0.65083	-0.00027457	421.88032563016094	18.651	0.73709	18.651	18.269	19.006	0					44	25	2	0	0	0	0.32122	1	2041	2041		2.086	0	1	46849	+		33624	19532	19613	19614	41012	41012					-0.001163610255389358
PPPHTRFWEP	10	Unmodified	_PPPHTRFWEP_					0	0	0			REV__ENST00000252674.8_2_19:6212397-6212727:-|nuORF	REV__ENST00000252674.8_2_19:6212397-6212727:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.57513427734375	3	421.88049	1262.61964	-0.27845	-0.00011747	0.011475	4.841E-06	-0.26697	-0.00011263	421.880577607934	18.863	0.80073	18.805	18.341	19.142	-0.058174					45	27	2	0	0	0	0.32122	1	2094	2094		2.086	0	1	52237	+		33625	19532	19613	19614	41013	41013					-0.001163610255389358
PPPKPWETRR	10	Unmodified	_PPPKPWETRR_					0	0	0		ENST00000472678.1_1_2:61244894-61244987:+|nuORF;ENSG00000162928|ENST00000295030|PEX13	ENST00000472678.1_1_2:61244894-61244987:+|nuORF	ENST00000472678.1_1_2:61244894-61244987:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.8948669433594	3	421.903406	1262.68839	-0.38194	-0.00016114	-0.080723	-3.4057E-05	-0.46267	-0.0001952	422.23764061689286	12.947	0.23055	12.879	12.763	12.993	-0.067496					11	7	2	0	0	0	0.39325	1	277	277		4.7159	1.6437	1	15420			33626	5631	19614	19615	41014	41014					0.0675530327416709
PPPLGPRERRP	11	Unmodified	_PPPLGPRERRP_					0	0	0		ENST00000261402.6_1_12:106532525-106533446:-|nuORF	ENST00000261402.6_1_12:106532525-106533446:-|nuORF	ENST00000261402.6_1_12:106532525-106533446:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.921142578125	3	424.582556	1270.72584	-0.18579	-7.8883E-05	-1.6752	-0.00071127	-1.861	-0.00079016	424.5817711012615	18.327	0.68415	18.327	17.93	18.614	0					57	23	4	0	0	0	0.3299	1	1969	1969		6.6235	0	1	189220			33627	8964	19615	19616	41015	41015					0.10130394539783083
PPPLKFFD	8	Unmodified	_PPPLKFFD_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2525634765625	2	480.763104	959.511654	-0.062773	-3.0179E-05	-3.0769	-0.0014793	-3.1397	-0.0015094	480.7615935371345	27.674	0.20195	27.674	27.53	27.732	0					10	6	2	0	0	0	0.3366	1	4716	4716		18.135	0	1	69990	+		33628	17128	19616	19617	41016	41016					0.030278743911821948
PPPLPTFWL	9	Unmodified	_PPPLPTFWL_					0	0	0		ENST00000564546.5_1_16:30076568-30077015:+|nuORF	ENST00000564546.5_1_16:30076568-30077015:+|nuORF	ENST00000564546.5_1_16:30076568-30077015:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.3374633789062	2	534.299853	1066.58515	0.51528	0.00027532	1.9442	0.0010388	2.4595	0.0013141	534.2994299541866	21.393	0.083977	21.344	21.29	21.373	-0.049377					4	2	2	0	0	0	0.25811	1	2826	2826		5.2307	0	1	10899			33629	11949	19617	19618	41017	41017					0.05452422833627679
PPPLSPQQP	9	Unmodified	_PPPLSPQQP_					0	0	0			REV__ENSG00000124313|ENST00000642864|IQSEC2	REV__ENSG00000124313|ENST00000642864|IQSEC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.25262451171875	2	480.761092	959.507631	-0.045079	-2.1672E-05	1.5406	0.00074065	1.4955	0.00071898	480.7620121654371	27.577	0.17735	27.555	27.464	27.641	-0.021412					9	5	2	0	0	0	0.2322	1	4721	4721		20.454	2.3186	1	62360	+		33630	15229	19618	19619	41018	41018					0.026257848974637454
PPPPAFTF	8	Unmodified	_PPPPAFTF_					0	0	0		ENST00000514938.1_1_22:50943608-50943827:-|nuORF	ENST00000514938.1_1_22:50943608-50943827:-|nuORF	ENST00000514938.1_1_22:50943608-50943827:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2370300292969	2	437.228897	872.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.406	1	77.461	76.961	77.961	0.055412								0	0	0	0.36169	1	19969	19969		9.3474	2.9933	1				33631	11421	19619	19620	41019	41019					0.0019162981133149515
PPPPHKMAAPI	11	Unmodified	_PPPPHKMAAPI_					0	0	0		ENST00000609803.2_1_12:46121133-46121556:-|nuORF	ENST00000609803.2_1_12:46121133-46121556:-|nuORF	ENST00000609803.2_1_12:46121133-46121556:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3209228515625	2	578.320794	1154.62703	0.38603	0.00022325	0.33455	0.00019348	0.72057	0.00041672	578.3207795532456	82.408	2.4147	82.387	81.478	83.892	-0.020584					239	99	3	0	0	0	0.44192	1	21687	21687		5.7319	0.83484	1	1098200			33632	12332	19620	19621	41020	41020					0.055906552505121
PPPPLFPPPF	10	Unmodified	_PPPPLFPPPF_					0	0	0		nc|ENSG00000206561|Q9Y215-3|COLQ;nc|ENSG00000206561|Q9Y215-2|COLQ;nc|ENSG00000206561|Q9Y215-5|COLQ;nc|ENSG00000206561|Q9Y215-4|COLQ;ENSG00000206561|ENST00000383788|COLQ;nc|ENSG00000206561|Q9Y215-7|COLQ;nc|ENSG00000206561|Q9Y215-6|COLQ;nc|ENSG00000206561|Q9Y215-8|COLQ	nc|ENSG00000206561|Q9Y215-3|COLQ	nc|ENSG00000206561|Q9Y215-3|COLQ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.307373046875	2	553.307678	1104.6008	0.22844	0.0001264	-1.0947	-0.00060569	-0.86624	-0.0004793	553.3072657742451	49.611	0.40403	49.631	49.372	49.776	0.020744					30	14	3	0	0	0	0.31876	1	11462	11462		18.135	2.3668	1	340370			33633	8324	19621	19622	41021	41021					0.052687093506847305
PPPPLFPPPF	10	Unmodified	_PPPPLFPPPF_					0	0	0		nc|ENSG00000206561|Q9Y215-3|COLQ;nc|ENSG00000206561|Q9Y215-2|COLQ;nc|ENSG00000206561|Q9Y215-5|COLQ;nc|ENSG00000206561|Q9Y215-4|COLQ;ENSG00000206561|ENST00000383788|COLQ;nc|ENSG00000206561|Q9Y215-7|COLQ;nc|ENSG00000206561|Q9Y215-6|COLQ;nc|ENSG00000206561|Q9Y215-8|COLQ	nc|ENSG00000206561|Q9Y215-3|COLQ	nc|ENSG00000206561|Q9Y215-3|COLQ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.307678	1104.6008	0.44583	0.00024668	-1.5167	-0.00083921	-1.0709	-0.00059253	553.3068706331368	49.642	0.49752	49.642	49.321	49.819	0	0.010259	-0.00028939	NaN	18.135	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372620			33634	8324	19621	19622							0.052687093506847305
PPPPLFPPPF	10	Unmodified	_PPPPLFPPPF_					0	0	0		nc|ENSG00000206561|Q9Y215-3|COLQ;nc|ENSG00000206561|Q9Y215-2|COLQ;nc|ENSG00000206561|Q9Y215-5|COLQ;nc|ENSG00000206561|Q9Y215-4|COLQ;ENSG00000206561|ENST00000383788|COLQ;nc|ENSG00000206561|Q9Y215-7|COLQ;nc|ENSG00000206561|Q9Y215-6|COLQ;nc|ENSG00000206561|Q9Y215-8|COLQ	nc|ENSG00000206561|Q9Y215-3|COLQ	nc|ENSG00000206561|Q9Y215-3|COLQ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.307678	1104.6008	0.33285	0.00018417	-1.1914	-0.00065921	-0.85856	-0.00047505	553.3069660941098	49.577	0.37581	49.622	49.425	49.801	0.044891	-0.0099206	7.0598E-05	NaN	18.135	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	439040			33635	8324	19621	19622							0.052687093506847305
PPPPLLRR	8	Unmodified	_PPPPLLRR_					0	0	0			REV__ENST00000299084.8_1_15:38545141-38545246:+|nuORF	REV__ENST00000299084.8_1_15:38545141-38545246:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.72943115234375	2	473.303262	944.59197	0.33748	0.00015973	-0.046612	-2.2062E-05	0.29087	0.00013767	473.3031035889464	51.114	0.60897	51.114	50.872	51.481	0					44	22	3	0	0	0	0.21281	1	11890	11890		46.921	0	1	574520	+		33636	19809	19622	19623	41022	41022					0.11745780504884351
PPPPLLRR	8	Unmodified	_PPPPLLRR_					0	0	0			REV__ENST00000299084.8_1_15:38545141-38545246:+|nuORF	REV__ENST00000299084.8_1_15:38545141-38545246:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7294006347656	2	473.303262	944.59197	0.31424	0.00014873	-0.28616	-0.00013544	0.028084	1.3292E-05	473.303028798428	51.137	0.47146	51.183	50.957	51.429	0.046574					40	17	3	0	0	0	0.21281	1	11898	11898		46.921	0	1	588130	+		33637	19809	19622	19623	41023	41023					0.11745780504884351
PPPPPRTPWEP	11	Unmodified	_PPPPPRTPWEP_					0	0	0		ENST00000295899.9_1_3:63849453-63849567:-|nuORF	ENST00000295899.9_1_3:63849453-63849567:-|nuORF	ENST00000295899.9_1_3:63849453-63849567:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.88726806640625	3	424.224146	1269.65061	-0.23124	-9.8099E-05	-3.218	-0.0013652	-3.4493	-0.0014633	424.2228220061831	30.672	0.63465	30.7	30.394	31.029	0.027157					31	22	2	0	0	0	0.33025	1	5615	5615		9.2438	0.79947	1	206960			33638	9178	19623	19624	41024	41024					0.02656792288712495
PPPQETTIRK	10	Unmodified	_PPPQETTIRK_					0	0	0			REV__ENSG00000113300|ENST00000261951|CNOT6	REV__ENSG00000113300|ENST00000261951|CNOT6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.8302001953125	2	583.830037	1165.64552	-0.092569	-5.4045E-05	-1.0247	-0.00059824	-1.1172	-0.00065228	583.8301344969418	106.7	0.2431	106.7	106.66	106.9	0					45	37	2	0	0	0	0.39227	1	28186	28186		4.897	0.56777	1	1508800	+		33639	14802	19624	19625	41025	41025					0.06932488426059535
PPPQETTIRK	10	Unmodified	_PPPQETTIRK_					0	0	0			REV__ENSG00000113300|ENST00000261951|CNOT6	REV__ENSG00000113300|ENST00000261951|CNOT6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.8300170898438	2	583.830037	1165.64552	0.055098	3.2168E-05	-0.67318	-0.00039303	-0.61809	-0.00036086	583.8301896163525	106.73	0.1424	106.72	106.64	106.79	-0.0060425					24	19	2	0	0	0	0.37454	1	28204	28204		8.1555	1.4324	1	1240500	+		33640	14802	19624	19625	41026	41026					0.06932488426059535
PPPQETTIRK	10	Unmodified	_PPPQETTIRK_					0	0	0			REV__ENSG00000113300|ENST00000261951|CNOT6	REV__ENSG00000113300|ENST00000261951|CNOT6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	583.830037	1165.64552	-0.092569	-5.4045E-05	-1.0247	-0.00059824	-1.1172	-0.00065228	583.8301344969418	106.7	0.2431	106.7	106.66	106.9	0	-0.0092356	-0.00048718	NaN	8.1555	45	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1508800	+		33641	14802	19624	19625							0.06932488426059535
PPPQETTIRK	10	Unmodified	_PPPQETTIRK_					0	0	0			REV__ENSG00000113300|ENST00000261951|CNOT6	REV__ENSG00000113300|ENST00000261951|CNOT6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	583.830037	1165.64552	0.27574	0.00016099	-0.45699	-0.0002668	-0.18124	-0.00010582	583.8300462502915	106.71	0.10685	106.72	106.66	106.77	0.0050507	0.0029988	0.00017569	NaN	8.1555	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1413000	+		33642	14802	19624	19625							0.06932488426059535
PPPQPLSL	8	Unmodified	_PPPQPLSL_					0	0	0		ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.920166015625	2	424.747453	847.480354	0.085587	3.6353E-05	-0.8255	-0.00035063	-0.73992	-0.00031428	424.74735854495066	45.365	0.60884	45.43	45.173	45.782	0.065048					36	22	2	0	0	0	0.28235	1	10087	10087		38.151	2.107	1	481300			33643	8393	19625	19626	41027	41027					0.05051301357093507
PPPQPWGRLL	10	Unmodified	_PPPQPWGRLL_					0	0	0		ENST00000535181.5_1_12:133448808-133463914:-|nuORF;ENST00000536196.1_1_12:133448709-133463914:-|nuORF;nc|ENSG00000072609|Q96EP1-5|CHFR;nc|ENSG00000072609|Q96EP1-3|CHFR;ENSG00000072609|ENST00000450056|CHFR;nc|ENSG00000072609|Q96EP1-4|CHFR;nc|ENSG00000072609|Q96EP1|CHFR	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8453369140625	2	580.832383	1159.65021	0.36815	0.00021384	-0.61648	-0.00035807	-0.24833	-0.00014424	580.8323039039694	88.297	0.3404	88.295	88.15	88.491	-0.0028381					24	17	2	0	0	0	0.3641	1	23308	23308		10.074	0.72649	1	75356			33644	985	19626	19627	41028	41028					0.07677417359514038
PPPRPKLK	8	Unmodified	_PPPRPKLK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.76348876953125	2	466.805637	931.596721	0.24264	0.00011326	1.2661	0.00059103	1.5088	0.00070429	466.8060627499154	23.588	0.50839	23.549	23.311	23.82	-0.038927					31	17	3	0	0	0	0.34337	1	3463	3463		5.2307	0	1	119430	+		33645	16705;23038	19627	19628	41029	41029					0.12818664647647893
PPPRPKLK	8	Unmodified	_PPPRPKLK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	466.805637	931.596721	-0.17398	-8.1213E-05	1.5786	0.00073692	1.4047	0.00065571	466.8062705840204	23.443	0.4719	23.443	23.197	23.669	0	-0.044249	0.00012035	NaN	5.2307	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89048	+		33646	16705;23038	19627	19628							0.12818664647647893
PPPRPKLK	8	Unmodified	_PPPRPKLK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	466.805637	931.596721	-0.076794	-3.5848E-05	1.4712	0.00068678	1.3944	0.00065094	466.8062289552172	23.543	0.46943	23.47	23.231	23.7	-0.072559	-0.01711	2.0076E-05	NaN	5.2307	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90548	+		33647	16705;23038	19627	19628							0.12818664647647893
PPPRRGLLSL	10	Unmodified	_PPPRRGLLSL_					0	0	0			REV__ENST00000433480.2_1_13:48876566-48877550:-|nuORF	REV__ENST00000433480.2_1_13:48876566-48877550:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7904663085938	2	553.345658	1104.67676	-0.012771	-7.0669E-06	0.26606	0.00014722	0.25329	0.00014016	553.3457359993375	13.803	0.19483	13.698	13.568	13.763	-0.10466					11	6	2	0	0	0	0.32123	1	549	549		1.6526	0	1	61443	+		33648	20968	19628	19629	41030	41030					0.12861106250852572
PPPRVTTPAM	10	Unmodified	_PPPRVTTPAM_					0	0	0		ENST00000578167.5_1_19:5684955-5685051:+|nuORF	ENST00000578167.5_1_19:5684955-5685051:+|nuORF	ENST00000578167.5_1_19:5684955-5685051:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2547607421875	2	533.789327	1065.5641	-0.03908	-2.0861E-05	3.2714	0.0017462	3.2323	0.0017254	533.7911499879662	13.853	0.18832	13.748	13.685	13.873	-0.10466					10	6	2	0	0	0	0.3198	1	580	580		4.3292	0	1	27095			33649	12058	19629	19630	41031	41031					0.03394089462494776
PPPTDLRFTNI	11	Unmodified	_PPPTDLRFTNI_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;ENST00000492816.6_1_2:216249553-216256565:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.887451171875	3	424.231189	1269.67174	-0.041197	-1.7477E-05	3.0798	0.0013065	3.0386	0.0012891	424.2330084703547	29.906	0.11843	29.919	29.83	29.948	0.012266					5	3	2	0	0	0	0.32774	1	5396	5396		9.7643	0	1	13664			33650	2642	19630	19631	41032	41032					0.047687575975714935
PPPTISTSIFL	11	Unmodified	_PPPTISTSIFL_					0	0	0		nc|ENSG00000148218|P13716-2|ALAD;ENST00000482847.5_1_9:116150582-116155760:-|nuORF	nc|ENSG00000148218|P13716-2|ALAD	nc|ENSG00000148218|P13716-2|ALAD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8348388671875	2	586.831714	1171.64888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.226	1	84.304	83.804	84.804	0.077095								0	0	0	0.35922	1	22063	22063		6.2058	2.6093	1				33651	11053	19631	19632	41033	41033					0.06991738480087406
PPPTISTSIFL	11	Unmodified	_PPPTISTSIFL_					0	0	0		nc|ENSG00000148218|P13716-2|ALAD;ENST00000482847.5_1_9:116150582-116155760:-|nuORF	nc|ENSG00000148218|P13716-2|ALAD	nc|ENSG00000148218|P13716-2|ALAD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.834716796875	2	586.831714	1171.64888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.655	1	84.642	84.142	85.142	-0.01284								0	0	0	0.35922	1	22190	22190		6.2058	1.8765	1				33652	11053	19631	19632	41034	41034					0.06991738480087406
PPPTSPYWLI	10	Unmodified	_PPPTSPYWLI_					0	0	0			REV__HPS6|p.D763Y|1|0.26|ENSG00000166189|chr10:102067761-102067761|G/T|missense_variant	REV__HPS6|p.D763Y|1|0.26|ENSG00000166189|chr10:102067761-102067761|G/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8343505859375	2	585.813325	1169.6121	0.6037	0.00035365	0.24314	0.00014243	0.84684	0.00049609	585.8132983794044	83.904	0.85394	83.904	83.228	84.082	0					86	33	3	0	0	0	0.33817	2	21881	21881;21981		14.838	7.2293	1	381160	+		33653	22763	19632	19633	41035;41036	41035					0.03407486654191416
PPPTSPYWLI	10	Unmodified	_PPPTSPYWLI_					0	0	0			REV__HPS6|p.D763Y|1|0.26|ENSG00000166189|chr10:102067761-102067761|G/T|missense_variant	REV__HPS6|p.D763Y|1|0.26|ENSG00000166189|chr10:102067761-102067761|G/T|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8132934570312	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.81	1	100.81	100.31	101.31	0								0	0	0	0.34994	1	26914	26914		14.838	0	1		+		33654	22763	19632	19633	41037	41037					0.03407486654191416
PPPTSPYWLI	10	Unmodified	_PPPTSPYWLI_					0	0	0			REV__HPS6|p.D763Y|1|0.26|ENSG00000166189|chr10:102067761-102067761|G/T|missense_variant	REV__HPS6|p.D763Y|1|0.26|ENSG00000166189|chr10:102067761-102067761|G/T|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8138427734375	2	585.813325	1169.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.2	1	113.21	112.71	113.71	0.014824								0	0	0	0.36126	1	29452	29452		10.074	0.6908	1		+		33655	22763	19632	19633	41038	41038					0.03407486654191416
PPPVAAKPTF	10	Unmodified	_PPPVAAKPTF_					0	0	0		nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.3262329101562	2	512.794935	1023.57532	0.20712	0.00010621	0.50636	0.00025966	0.71347	0.00036586	512.7950597628977	33.13	0.7186	33.185	32.946	33.665	0.055309					65	25	4	0	0	0	0.31165	1	6470	6470		15.847	15.847	1	669490			33656	2861	19633	19634	41039	41039					0.0644723482827203
PPPVRRSS	8	Unmodified	_PPPVRRSS_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2598571777344	2	448.259051	894.503549	0.23304	0.00010446	-0.28505	-0.00012777	-0.052006	-2.3312E-05	448.25888075525063	79.794	1.072	79.794	79.441	80.513	0					117	40	4	0	0	0	0.44569	2	20652	20652;20800		7.2892	0	1	5919600			33657	1088	19634	19635	41040;41041	41040					0.05207740194430244
PPPVRRSS	8	Unmodified	_PPPVRRSS_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.25885009765625	2	448.259051	894.503549	0.32302	0.0001448	0.51563	0.00023114	0.83865	0.00037593	448.2593175342838	82.215	0.56548	82.191	81.906	82.471	-0.02404					29	21	2	0	0	0	0.45544	1	21452	21452		3.9444	0	1	480460			33658	1088	19634	19635	41042	41042					0.05207740194430244
PPPVSDRMR	9	Unmodified	_PPPVSDRMR_					0	0	0		ENST00000382255.7_2_9:1055783-1057270:+|nuORF;ENST00000259622.10_2_9:1056133-1057270:+|nuORF;ENSG00000173253|ENST00000358146|DMRT2	ENST00000382255.7_2_9:1055783-1057270:+|nuORF	ENST00000382255.7_2_9:1055783-1057270:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.301513671875	2	527.776751	1053.53895	0.29277	0.00015452	1.5293	0.00080714	1.8221	0.00096166	527.7775065311065	22.395	0.78286	22.35	21.952	22.735	-0.044867					61	26	3	0	0	0	0.24913	1	3033	3033		7.9102	0	1	159100			33659	6709	19635	19636	41043	41043					0.014320346599106415
PPPYTPTPRF	10	Unmodified	_PPPYTPTPRF_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.7943725585938	2	586.808574	1171.60259	0.25487	0.00014956	-0.13203	-7.7478E-05	0.12283	7.2079E-05	586.8082166737614	42.771	2.0214	42.856	41.906	43.927	0.085197					138	73	3	0	0	0	0.31867	1	9297	9297		18.146	1.0335	1	741010			33660	1286	19636	19637	41044	41044					0.023657183686282224
PPQASGLLLH	10	Unmodified	_PPQASGLLLH_					0	0	0		ENSG00000163545|ENST00000367157|NUAK2	ENSG00000163545|ENST00000367157|NUAK2	ENSG00000163545|ENST00000367157|NUAK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7933349609375	2	516.795466	1031.57638	0.31892	0.00016482	-2.9684	-0.001534	-2.6494	-0.0013692	516.7932586793636	90.538	0.64137	90.629	90.254	90.895	0.090668					88	49	2	0	0	0	0.36015	1	24015	24015		10.8	1.4521	1	256930			33661	5699	19637	19638	41045	41045					0.06185449197187154
PPQEVIRPM	9	Unmodified	_PPQEVIRPM_					0	0	0			REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2548217773438	2	533.789327	1065.5641	0.10538	5.6252E-05	3.8865	0.0020746	3.9919	0.0021308	533.7912686856565	13.871	0.25588	13.805	13.661	13.917	-0.066067					12	8	2	0	0	0	0.25879	1	568	568		4.756	0	1	15609	+		33662	16647	19638	19639	41046	41046					0.03394089462494776
PPQFFPQHHL	10	Unmodified	_PPQFFPQHHL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9136657714844	3	416.548852	1246.62473	0.488	0.00020328	1.0623	0.00044251	1.5503	0.00064579	416.5494740332017	21.071	0.48603	20.961	20.779	21.266	-0.11003					26	16	3	0	0	0	0.31926	1	2766	2766		5.4027	1.5264	1	83342			33663	1047	19639	19640	41047	41047					0.011279428370698952
PPQGRRRPV	9	Unmodified	_PPQGRRRPV_					0	0	0		ENST00000523903.5_1_17:39991516-39992234:-|nuORF;ENST00000495317.1_1_17:39992012-39992445:-|nuORF	ENST00000523903.5_1_17:39991516-39992234:-|nuORF	ENST00000523903.5_1_17:39991516-39992234:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.81689453125	2	531.817599	1061.62064	0.40649	0.00021618	-0.94162	-0.00050077	-0.53513	-0.00028459	531.8166323495797	90.65	1.1249	90.74	89.872	90.997	0.090668					138	87	3	0	0	0	0.33018	1	24070	24070		4.3292	0	1	683080			33664	11219	19640	19641	41048	41048					0.09229898134026371
PPQKLQILVD	10	Unmodified	_PPQKLQILVD_					0	0	0		nc|ENSG00000182240|Q9Y5Z0-3|BACE2;nc|ENSG00000182240|Q9Y5Z0-5|BACE2;nc|ENSG00000182240|Q9Y5Z0-4|BACE2;nc|ENSG00000182240|Q9Y5Z0-2|BACE2;ENSG00000182240|ENST00000330333|BACE2	nc|ENSG00000182240|Q9Y5Z0-3|BACE2	nc|ENSG00000182240|Q9Y5Z0-3|BACE2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8432006835938	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.493	1	79.493	78.993	79.993	0								0	0	0	0.35421	1	20616	20616		13.042	5.9407	1				33665	7283	19641	19642	41049	41049					0.10690847091291289
PPQLAAPGRRA	11	Unmodified	_PPQLAAPGRRA_					0	0	0			REV__ENST00000219271.3_1_16:58079013-58079367:+|nuORF	REV__ENST00000219271.3_1_16:58079013-58079367:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3297729492188	2	567.330539	1132.64652	0.28491	0.00016164	-0.80265	-0.00045537	-0.51773	-0.00029372	567.3299030070093	80.442	2.8672	80.416	78.604	81.472	-0.026825					370	113	5	0	0	0	0.44828	1	21189	21189		4.897	4.897	1	5958500	+		33666	19417	19642	19643	41050	41050					0.0855074758567298
PPQRGEFTIKT	11	Unmodified	_PPQRGEFTIKT_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-6|EMSY	REV__nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8873291015625	3	425.234822	1272.68264	-0.13487	-5.7353E-05	-0.8076	-0.00034342	-0.94248	-0.00040077	425.56870769015916	30.902	0.22435	30.902	30.838	31.062	0					11	7	2	0	0	0	0.33056	1	5733	5733		8.7518	5.1591	1	42058	+		33667	16819	19643	19644	41051	41051					0.05720159971860994
PPQRRRLARRR	11	Unmodified	_PPQRRRLARRR_					0	0	0		ENST00000393606.7_1_17:42294008-42297052:-|nuORF	ENST00000393606.7_1_17:42294008-42297052:-|nuORF	ENST00000393606.7_1_17:42294008-42297052:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.9751281738281	3	487.974781	1460.90251	0.25591	0.00012488	0.062371	3.0436E-05	0.31828	0.00015531	487.9747485039012	103.07	0.43288	103.06	102.7	103.14	-0.0011139					137	54	3	0	0	0	0.47545	3	27437	27402;27437;27444		1.3296	1.2348	1	3539700			33668	10055	19644	19645	41052;41053;41054	41053					0.19049868213437549
PPQTKMNK	8	Unmodified	_PPQTKMNK_					0	0	0			REV__RPGRIP1|p.E1092Tfs*6|1|0.3|ENSG00000092200|chr14:21334637-21334641|AGTGA/-|frameshift_variant	REV__RPGRIP1|p.E1092Tfs*6|1|0.3|ENSG00000092200|chr14:21334637-21334641|AGTGA/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.24578857421875	2	472.25512	942.495686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.292	1	15.182	14.682	15.682	-0.10981								0	0	0	0.37078	1	985	985		5.2307	0	1		+		33669	14079	19645	19646	41055	41055					0.02213844882635385
PPRDARVF	8	Unmodified	_PPRDARVF_					0	0	0			REV__ENSG00000115226|ENST00000264703|FNDC4	REV__ENSG00000115226|ENST00000264703|FNDC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2771911621094	2	479.266876	956.519199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.628	1	72.599	72.099	73.099	-0.029305								0	0	0	0.36486	1	18510	18510		7.9102	0	1		+		33670	14866	19646	19647	41056	41056					0.03920026711466562
PPRERRKK	8	Unmodified	_PPRERRKK_					0	0	0			REV__ENST00000479815.5_1_1:26799003-26799978:+|nuORF	REV__ENST00000479815.5_1_1:26799003-26799978:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2548217773438	2	533.833249	1065.65194	0.10101	5.3923E-05	0.34659	0.00018502	0.4476	0.00023894	533.8334308277357	13.825	0.28541	13.759	13.632	13.917	-0.066068					14	9	3	0	0	0	0.3439	1	568	568		2.8892	0	1	23759	+		33671	21324	19647	19648	41057	41057					0.12174471168123091
PPRERRKK	8	Unmodified	_PPRERRKK_					0	0	0			REV__ENST00000479815.5_1_1:26799003-26799978:+|nuORF	REV__ENST00000479815.5_1_1:26799003-26799978:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	533.833249	1065.65194	0.16395	8.7522E-05	-0.30097	-0.00016067	-0.13702	-7.3146E-05	533.833176148349	13.683	0.28503	13.683	13.537	13.822	0	-0.037755	-0.00044975	NaN	2.8892	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22858	+		33672	21324	19647	19648							0.12174471168123091
PPRETPQTP	9	Unmodified	_PPRETPQTP_					0	0	0		ENST00000178640.9_1_15:67835419-67835617:+|nuORF	ENST00000178640.9_1_15:67835419-67835617:+|nuORF	ENST00000178640.9_1_15:67835419-67835617:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.7960205078125	2	511.766906	1021.51926	0.067978	3.4789E-05	-0.83458	-0.00042711	-0.7666	-0.00039232	511.766865754587	15.464	0.42205	15.464	15.232	15.654	0					17	13	2	0	0	0	0.25988	1	1091	1091		3.9444	0	1	20961			33673	8789	19648	19649	41058	41058					0.009359819208043518
PPRHEGHVP	9	Unmodified	_PPRHEGHVP_					0	0	0		ENST00000519685.5_1_8:22873179-22874852:+|nuORF	ENST00000519685.5_1_8:22873179-22874852:+|nuORF	ENST00000519685.5_1_8:22873179-22874852:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7879638671875	2	513.267407	1024.52026	0.26395	0.00013548	2.4541	0.0012596	2.718	0.0013951	513.2680191687866	16.869	0.20537	16.869	16.72	16.925	0					9	6	3	0	0	0	0.23767	1	1456	1456		18.146	3.3081	1	34431			33674	11464	19649	19650	41059	41059					0.008982410803810126
PPRLKEMK	8	Unmodified	_PPRLKEMK_					0	0	0		nc|ENSG00000157168|Q02297-8|NRG1;nc|ENSG00000157168|Q02297-4|NRG1;nc|ENSG00000157168|Q02297-12|NRG1;nc|ENSG00000157168|Q02297-9|NRG1;nc|ENSG00000157168|Q02297-3|NRG1;nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000157168|Q02297-7|NRG1;ENSG00000157168|ENST00000405005|NRG1;nc|ENSG00000157168|Q02297-6|NRG1;nc|ENSG00000157168|Q02297-2|NRG1	nc|ENSG00000157168|Q02297-8|NRG1	nc|ENSG00000157168|Q02297-8|NRG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2859802246094	2	499.794412	997.574271	-0.090881	-4.5422E-05	3.122	0.0015603	3.0311	0.0015149	499.7960112667592	12.689	0.53024	12.622	12.491	13.022	-0.067496					32	17	4	0	0	0	0.344	1	186	186		2.5775	0.27475	1	314000			33675	5285	19650	19651	41060	41060					0.07538697187726484
PPRNPSLRI	9	Unmodified	_PPRNPSLRI_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7575073242188	2	525.314358	1048.61416	0.18811	9.8817E-05	-0.29008	-0.00015238	-0.10197	-5.3565E-05	525.314030023811	13.826	0.30531	13.826	13.687	13.992	0					17	10	2	0	0	0	0.25938	1	537	537		4.3292	0	1	79404	+		33676	13402	19651	19652	41061	41061					0.09179960182632385
PPRPPSVR	8	Unmodified	_PPRPPSVR_					0	0	0		ENST00000478283.5_1_1:29063492-29063627:+|nuORF	ENST00000478283.5_1_1:29063492-29063627:+|nuORF	ENST00000478283.5_1_1:29063492-29063627:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7438659667969	2	453.269419	904.524284	-0.16824	-7.6258E-05	0.78067	0.00035385	0.61243	0.0002776	453.26973452744835	28.222	0.44286	28.222	28.023	28.466	0.0004673					25	15	2	0	0	0	0.34294	1	4861	4861		7.2892	2.5332	1	122880			33677	10974	19652	19653	41062	41062					0.0682033057408944
PPRPRTRPRRR	11	Unmodified	_PPRPRTRPRRR_					0	0	0			REV__ENSG00000188263|ENST00000695950|IL17REL	REV__ENSG00000188263|ENST00000695950|IL17REL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.2991027832031	3	482.299265	1443.87596	0.023879	1.1517E-05	0.40511	0.00019538	0.42898	0.0002069	482.2993049695552	102.93	0.45158	102.95	102.57	103.02	0.016685					227	61	5	0	0	0	0.46554	2	27313	27313;27340		2.6312	1.3016	1	3227200	+		33678	18545	19653	19654	41063;41064	41063					0.1717817932210437
PPRQFLAGT	9	Unmodified	_PPRQFLAGT_					0	0	0			REV__nc|ENSG00000130826|O60832-2|DKC1	REV__nc|ENSG00000130826|O60832-2|DKC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.2530212402344	2	493.774534	985.534515	0.46433	0.00022927	0.33368	0.00016476	0.798	0.00039403	493.7746796610721	37.308	0.27496	37.401	37.197	37.472	0.093014					11	9	2	0	0	0	0.25323	1	7678	7678		10.074	0	1	90494	+		33679	15484	19654	19655	41065	41065					0.041168935086489
PPRRGGAP	8	Unmodified	_PPRRGGAP_					0	0	0			REV__nc|ENSG00000063601|Q13613-2|MTMR1	REV__nc|ENSG00000063601|Q13613-2|MTMR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.23272705078125	2	404.232836	806.45112	-0.147	-5.9424E-05	0.5338	0.00021578	0.38679	0.00015635	404.2330074881037	74.786	1.3482	74.839	74.459	75.807	0.052361					112	48	4	0	0	0	0.45169	1	19280	19280		5.2307	0	1	8557100	+		33680	13642	19655	19656	41066	41066					0.040152018514731935
PPRRGGAP	8	Unmodified	_PPRRGGAP_					0	0	0			REV__nc|ENSG00000063601|Q13613-2|MTMR1	REV__nc|ENSG00000063601|Q13613-2|MTMR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.22772216796875	2	404.232836	806.45112	0.17044	6.8896E-05	0.29564	0.00011951	0.46608	0.00018841	404.23291268791104	74.877	1.4311	74.846	74.473	75.904	-0.031479					118	52	4	0	0	0	0.45169	1	19314	19314		5.2307	5.2307	1	9663300	+		33681	13642	19655	19656	41067	41067					0.040152018514731935
PPRRKHMVFL	10	Unmodified	_PPRRKHMVFL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.8746948242188	2	640.874059	1279.73357	0.17423	0.00011166	0.94504	0.00060565	1.1193	0.00071731	640.8746587630847	95.193	0.67382	95.193	94.817	95.491	0					78	60	2	0	0	0	0.41673	1	25423	25423		0.40072	0.050084	1	80577			33682	4111	19656	19657	41068	41068					0.10488830535723537
PPRRRRAH	8	Unmodified	_PPRRRRAH_					0	0	0			REV__ENSG00000099381|ENST00000262519|SETD1A	REV__ENSG00000099381|ENST00000262519|SETD1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8009033203125	2	523.315558	1044.61656	0.071613	3.7476E-05	-2.4848	-0.0013003	-2.4132	-0.0012629	523.3141804279005	13.992	0.19508	13.887	13.738	13.933	-0.10466					13	6	3	0	0	0	0.34319	1	604	604		5.7604	0.028577	1	33529	+		33683	14134	19657	19658	41069	41069					0.0960385343098551
PPRVKEDEV	9	Unmodified	_PPRVKEDEV_					0	0	0		ENST00000368323.7_1_1:155881061-155881139:-|nuORF	ENST00000368323.7_1_1:155881061-155881139:-|nuORF	ENST00000368323.7_1_1:155881061-155881139:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.3378295898438	2	534.787838	1067.56112	0.30158	0.00016128	-0.018016	-9.635E-06	0.28356	0.00015164	534.787874870374	22.185	0.81042	22.084	21.498	22.308	-0.10034					42	29	2	0	0	0	0.26168	1	2899	2899		1.8442	0.36234	1	125820			33684	9757	19658	19659	41070	41070					0.03004537609331237
PPRVKEDEV	9	Unmodified	_PPRVKEDEV_					0	0	0		ENST00000368323.7_1_1:155881061-155881139:-|nuORF	ENST00000368323.7_1_1:155881061-155881139:-|nuORF	ENST00000368323.7_1_1:155881061-155881139:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	534.787838	1067.56112	0.39359	0.00021049	-1.533	-0.00081982	-1.1394	-0.00060933	534.7876215510936	22.159	0.39081	22.159	21.94	22.331	0	0.050491	-0.001448	NaN	1.8442	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108200			33685	9757	19658	19659							0.03004537609331237
PPRVKEDEV	9	Unmodified	_PPRVKEDEV_					0	0	0		ENST00000368323.7_1_1:155881061-155881139:-|nuORF	ENST00000368323.7_1_1:155881061-155881139:-|nuORF	ENST00000368323.7_1_1:155881061-155881139:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	534.787838	1067.56112	0.30198	0.00016149	-0.15649	-8.369E-05	0.14549	7.7805E-05	534.7877304196178	22.132	0.60018	22.083	21.774	22.375	-0.049377	-0.026165	2.4248E-05	NaN	1.8442	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112870			33686	9757	19658	19659							0.03004537609331237
PPRWPQRSS	9	Unmodified	_PPRWPQRSS_					0	0	0			REV__ENSG00000092051|ENST00000356300|JPH4	REV__ENSG00000092051|ENST00000356300|JPH4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7965087890625	2	555.793789	1109.57303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.44	1	114.46	113.96	114.96	0.016708								0	0	0	0.2646	1	29761	29761		1.6526	0.17072	1		+		33687	14075	19659	19660	41071	41071					0.02262199143183352
PPSKRARG	8	Unmodified	_PPSKRARG_					0	0	0		nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP	nc|ENSG00000164053|Q8WXE1-2|ATRIP	nc|ENSG00000164053|Q8WXE1-2|ATRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7590637207031	2	434.759218	867.503883	0.24792	0.00010779	-0.14645	-6.3671E-05	0.10147	4.4115E-05	434.75918576431127	77.367	1.9844	77.423	76.642	78.627	0.05542					176	71	5	0	0	0	0.45307	1	20112	20112		4.756	0	1	10874000			33688	5775	19660	19661	41072	41072					0.06483159914284897
PPSKRARG	8	Unmodified	_PPSKRARG_					0	0	0		nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP	nc|ENSG00000164053|Q8WXE1-2|ATRIP	nc|ENSG00000164053|Q8WXE1-2|ATRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7590026855469	2	434.759218	867.503883	0.33753	0.00014675	-0.21702	-9.4352E-05	0.12051	5.2394E-05	434.7591325606202	77.432	2.043	77.401	76.754	78.797	-0.031334					181	75	5	0	0	0	0.45307	1	19886	19886		4.756	0	1	11060000			33689	5775	19660	19661	41073	41073					0.06483159914284897
PPSLGEPPLH	10	Unmodified	_PPSLGEPPLH_					0	0	0		ENSG00000105997|ENST00000612286|HOXA3	ENSG00000105997|ENST00000612286|HOXA3	ENSG00000105997|ENST00000612286|HOXA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3321533203125	2	522.279649	1042.54475	0.062918	3.2861E-05	0.62082	0.00032424	0.68374	0.0003571	522.781146305587	13.887	0.11326	13.821	13.747	13.861	-0.066068					5	3	2	0	0	0	0.32009	1	566	566		3.9444	0	1	13715			33690	2045	19661	19662	41074	41074					0.025174564432290936
PPSLKEKKVKA	11	Unmodified	_PPSLKEKKVKA_					0	0	0		ENST00000494783.1_1_9:139397150-139399267:-|nuORF	ENST00000494783.1_1_9:139397150-139399267:-|nuORF	ENST00000494783.1_1_9:139397150-139399267:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.7796020507812	2	612.887355	1223.76016	0.36629	0.00022449	-0.61248	-0.00037538	-0.24619	-0.00015089	612.8868283388972	72.511	0.5396	72.481	72.198	72.738	-0.029305					39	18	3	0	0	0	0.33318	1	18391	18391		1.3295	0	1	252120			33691	11211	19662	19663	41075	41075					0.15722797908028951
PPSLKEKKVKA	11	Unmodified	_PPSLKEKKVKA_					0	0	0		ENST00000494783.1_1_9:139397150-139399267:-|nuORF	ENST00000494783.1_1_9:139397150-139399267:-|nuORF	ENST00000494783.1_1_9:139397150-139399267:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	612.887355	1223.76016	0.44021	0.0002698	-0.6695	-0.00041033	-0.22928	-0.00014052	612.8868192277497	72.399	0.48592	72.455	72.224	72.71	0.056572	-0.0018855	-6.147E-05	NaN	1.3295	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242610			33692	11211	19662	19663							0.15722797908028951
PPSMIKVV	8	Unmodified	_PPSMIKVV_					0	0	0		nc|ENSG00000196313|Q96HA1-3|POM121;nc|ENSG00000196313|Q96HA1-2|POM121;ENSG00000196313|ENST00000434423|POM121	nc|ENSG00000196313|Q96HA1-3|POM121	nc|ENSG00000196313|Q96HA1-3|POM121	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.26904296875	2	435.759507	869.50446	-0.14452	-6.2978E-05	2.9759	0.0012968	2.8314	0.0012338	435.7611627199158	16.684	0.4626	16.684	16.377	16.839	0					22	15	2	0	0	0	0.3366	1	1399	1399		18.135	0	1	61502			33693	12895	19663	19664	41076	41076					0.06448818519118049
PPSSQIVL	8	Unmodified	_PPSSQIVL_					0	0	0			REV__nc|ENSG00000165732|Q9NR30-2|DDX21;REV__ENSG00000107625|ENST00000373585|DDX50	REV__nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.74481201171875	2	420.744911	839.475269	0.35085	0.00014762	-0.2232	-9.3912E-05	0.12765	5.3708E-05	420.74467611140705	54.68	2.0203	54.664	54.17	56.19	-0.015923					153	73	3	0	0	0	0.28861	1	13192	13192		32.117	0	1	2313700	+		33694	17263;14559	19664	19665	41077	41077					0.04910997494471303
PPSTVKTYHY	10	Unmodified	_PPSTVKTYHY_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENST00000493587.1_1_8:100883622-100887891:+|nuORF	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.3206787109375	2	596.803488	1191.59242	0.52863	0.00031549	0.35255	0.00021041	0.88119	0.0005259	596.803153157213	29.379	1.4874	29.392	29.134	30.622	0.012266					112	51	4	0	0	0	0.32054	1	5211	5211		3.2813	0.28607	1	435460			33695	3647	19665	19666	41078	41078					0.004291106434266112
PPSWPHGS	8	Unmodified	_PPSWPHGS_					0	0	0			REV__ENST00000498082.1_1_12:121098912-121099173:+|nuORF	REV__ENST00000498082.1_1_12:121098912-121099173:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.7041015625	2	432.703577	863.392602	0.26757	0.00011578	1.153	0.00049892	1.4206	0.0006147	432.70383065175616	78.089	1.5955	78.147	77.819	79.415	0.058151					98	64	3	0	0	0	0.46022	1	20190	20190		2.3027	0	1	378100	+		33696	21692	19666	19667	41079	41079					-0.04455899513664008
PPSWPHGS	8	Unmodified	_PPSWPHGS_					0	0	0			REV__ENST00000498082.1_1_12:121098912-121099173:+|nuORF	REV__ENST00000498082.1_1_12:121098912-121099173:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	432.703577	863.392602	0.32092	0.00013886	1.1995	0.00051902	1.5204	0.00065788	432.7038170411101	78.168	1.306	78.168	77.878	79.184	0	-0.0051713	1.5655E-06	NaN	2.3027	79	51	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361920	+		33697	21692	19666	19667							-0.04455899513664008
PPSWPHGS	8	Unmodified	_PPSWPHGS_					0	0	0			REV__ENST00000498082.1_1_12:121098912-121099173:+|nuORF	REV__ENST00000498082.1_1_12:121098912-121099173:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	432.703577	863.392602	0.41761	0.0001807	1.2542	0.00054268	1.6718	0.00072338	432.70380391258317	78.234	1.6091	78.203	77.785	79.394	-0.030426	0.030517	4.8893E-05	NaN	2.3027	88	63	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371270	+		33698	21692	19666	19667							-0.04455899513664008
PPSYDFLDKL	10	Unmodified	_PPSYDFLDKL_					0	0	0			REV__nc|ENSG00000029363|Q9NYF8-3|BCLAF1	REV__nc|ENSG00000029363|Q9NYF8-3|BCLAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3399047851562	2	597.805697	1193.59684	0.48768	0.00029154	-0.15862	-9.4822E-05	0.32907	0.00019672	597.8052394379503	53.65	0.43791	53.64	53.401	53.839	-0.0096054					20	16	2	0	0	0	0.3144	1	12694	12694		8.7454	0	1	208590	+		33699	13490	19667	19668	41080	41080					0.007785750663060753
PPTARTRA	8	Unmodified	_PPTARTRA_					0	0	0		ENST00000478241.6_2_12:56224399-56224693:+|nuORF	ENST00000478241.6_2_12:56224399-56224693:+|nuORF	ENST00000478241.6_2_12:56224399-56224693:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2507019042969	2	435.251226	868.487899	-0.019216	-8.3639E-06	-0.2246	-9.7757E-05	-0.24382	-0.00010612	435.25100893215125	68.817	1.8957	68.889	68.383	70.279	0.071938					127	68	2	0	0	0	0.46022	1	17291	17291		2.3027	0	1	1228300			33700	10969	19668	19669	41081	41081					0.048394536773685104
PPTFYWYNR	9	Unmodified	_PPTFYWYNR_					0	0	0			REV__nc|ENSG00000141258|O43147-5|SGSM2	REV__nc|ENSG00000141258|O43147-5|SGSM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.9084167480469	3	415.201341	1242.58219	-0.1691	-7.0212E-05	4.0383	0.0016767	3.8692	0.0016065	415.2026924275422	23.81	0.57227	23.81	23.513	24.085	0					42	19	3	0	0	0	0.25879	1	3579	3579		1.0715	0	1	70255	+		33701	16068	19669	19670	41082	41082					-0.02939452291161615
PPTPHLPT	8	Unmodified	_PPTPHLPT_					0	0	0			REV__ENST00000369501.2_1_6:88875621-88875864:-|nuORF	REV__ENST00000369501.2_1_6:88875621-88875864:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.5487365722656	2	430.237253	858.459953	-0.27222	-0.00011712	2.7436	0.0011804	2.4714	0.0010633	430.2383246684741	15.909	0.27211	15.909	15.763	16.035	0					12	9	2	0	0	0	0.34185	1	1203	1203		5.7604	0	1	25751	+		33702	20358	19670	19671	41083	41083					0.025061306972816055
PPTPPRPLPMP	11	Unmodified	_PPTPPRPLPMP_					0	0	0			REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	REV__ENST00000597643.5_1_19:17434328-17439993:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3344116210938	2	600.333901	1198.65325	0.71064	0.00042662	0.58222	0.00034953	1.2929	0.00077615	600.3340446435084	83.86	2.8022	83.937	83.243	86.045	0.077095					275	109	3	0	0	0	0.44523	1	22209	22209		5.2969	0.96765	1	1104800	+		33703	13796	19671	19672	41084	41084					0.06186924421990625
PPTRPRRRRRP	11	Unmodified	_PPTRPRRRRRP_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.2991943359375	3	482.299265	1443.87596	-0.19847	-9.5722E-05	0.65845	0.00031757	0.45998	0.00022185	482.29938481707006	103	0.51773	103	102.65	103.17	0					189	71	4	0	0	0	0.47545	2	27340	27340;27406		1.3296	0	1	2501400	+		33704	16036	19672	19673	41085;41086	41085					0.1717817932210437
PPTRPRRRRRP	11	Unmodified	_PPTRPRRRRRP_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.29962158203125	3	482.299265	1443.87596	0.023879	1.1517E-05	0.40511	0.00019538	0.42898	0.0002069	482.2993049695552	102.93	0.45158	102.95	102.57	103.02	0.016685					227	61	5	0	0	0	0.47545	1	27371	27371		1.3296	0	1	3227200	+		33705	16036	19672	19673	41087	41087					0.1717817932210437
PPTRPRRRRRP	11	Unmodified	_PPTRPRRRRRP_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.63372802734375	3	482.299265	1443.87596	0.22117	0.00010667	0.41608	0.00020068	0.63725	0.00030735	482.29929358549157	103.05	0.57582	103.04	102.66	103.23	-0.0011139					196	75	4	0	0	0	0.47545	4	27365	27365;27393;27428;27461		1.3296	0	1	4441200	+		33706	16036	19672	19673	41088;41089;41090;41091	41088					0.1717817932210437
PPTRPRRRRRP	11	Unmodified	_PPTRPRRRRRP_					0	0	0			REV__ENSG00000140470|ENST00000268070|ADAMTS17	REV__ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.63372802734375	3	482.299265	1443.87596	0.22117	0.00010667	0.41608	0.00020068	0.63725	0.00030735	482.29929358549157	103.05	0.57582	103.04	102.66	103.23	-0.0011139					196	75	4	0	0	0	0.3333	1	27365	27365		1.3296	0	1	4441200	+		33707	16036	19672	19673	41092	41092					0.1717817932210437
PPTSEVQIVQ	10	Unmodified	_PPTSEVQIVQ_					0	0	0		ENST00000414049.1_1_13:90014155-90014710:-|nuORF	ENST00000414049.1_1_13:90014155-90014710:-|nuORF	ENST00000414049.1_1_13:90014155-90014710:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.78125	2	549.295496	1096.57644	0.55367	0.00030413	-1.5708	-0.00086283	-1.0171	-0.0005587	549.7956201336456	79.469	0.51583	79.53	79.372	79.888	0.061409					39	19	3	0	0	0	0.31143	1	20639	20639		17.113	3.2068	1	118670			33708	10298	19673	19674	41093	41093					0.03201404406536312
PPTSKRESKSR	11	Unmodified	_PPTSKRESKSR_					0	0	0		ENST00000315132.7_1_7:47092642-47093269:+|nuORF	ENST00000315132.7_1_7:47092642-47093269:+|nuORF	ENST00000315132.7_1_7:47092642-47093269:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8873596191406	3	424.905476	1271.6946	0.093214	3.9607E-05	1.6758	0.00071204	1.769	0.00075165	424.9060140937173	29.845	0.3649	29.845	29.605	29.97	0					26	12	3	0	0	0	0.32798	1	5392	5392		6.2344	1.342	1	138650			33709	9351	19674	19675	41094	41094					0.06961776715047563
PPTVEDKADWS	11	Unmodified	_PPTVEDKADWS_					0	0	0			REV__ENST00000377022.7_1_1:10725627-10820778:-|nuORF	REV__ENST00000377022.7_1_1:10725627-10820778:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.908447265625	3	415.531304	1243.57208	0.27835	0.00011566	3.746	0.0015566	4.0244	0.0016722	415.5327769777635	24.501	0.40424	24.429	24.151	24.555	-0.072559					17	13	2	0	0	0	0.33238	1	3772	3772		1.3296	0.55311	1	44133	+		33710	20496	19675	19676	41095	41095					-0.039961048070381366
PPVEHESL	8	Unmodified	_PPVEHESL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.79229736328125	2	454.229625	906.444697	0.66222	0.0003008	-0.299	-0.00013581	0.36322	0.00016499	454.2294303701925	50.691	0.45353	50.706	50.517	50.971	0.015415					23	16	2	0	0	0	0.31375	1	11790	11790		13.508	0	1	191420	+		33711	16705;23038	19676	19677	41096	41096					-0.012267808905676247
PPVFAPEV	8	Unmodified	_PPVFAPEV_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.234375	2	428.234179	854.453805	0.0031134	1.3332E-06	0.28927	0.00012388	0.29238	0.00012521	428.23420025106105	62.437	0.69365	62.437	62.162	62.856	0					68	25	3	0	0	0	0.29134	1	15391	15391		26.341	0	1	1103300	+		33712	14911	19677	19678	41097	41097					0.02075612465762333
PPVFAPEV	8	Unmodified	_PPVFAPEV_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2342529296875	2	428.234179	854.453805	0.011911	5.1009E-06	0.26576	0.00011381	0.27768	0.00011891	428.2342040434065	62.389	0.73818	62.381	62.094	62.832	-0.0085526					70	27	3	0	0	0	0.38703	2	15411	15411;15464		20.871	0	1	1004400	+		33713	14911	19677	19678	41098;41099	41098					0.02075612465762333
PPVFQKKFYIG	11	Unmodified	_PPVFQKKFYIG_					0	0	0		nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15;nc|ENSG00000150275|Q96QU1-2|PCDH15;ENST00000463095.2_1_10:55581620-55664971:-|nuORF	nc|ENSG00000150275|Q96QU1-6|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.56890869140625	3	441.920174	1322.73869	0.0087794	3.8798E-06	1.4613	0.00064577	1.4701	0.00064965	441.92117403093664	16.097	0.42833	16.097	15.867	16.295	0					26	14	2	0	0	0	0.3333	1	1257	1257		1.3296	0.63198	1	56878			33714	4905;12756	19678	19679	41100	41100					0.09023412879332682
PPVMEDPSFP	10	Unmodified	_PPVMEDPSFP_					0	0	0			REV__BCL9|p.V910Cfs*42|1|0.58|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant	REV__BCL9|p.V910Cfs*42|1|0.58|ENSG00000116128|chr1:147620874-147620875|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8135375976562	2	558.257525	1114.5005	0.10672	5.9577E-05	-0.1726	-9.6356E-05	-0.065881	-3.6779E-05	558.2573538682043	22.924	0.36789	22.836	22.599	22.967	-0.087608					22	12	2	0	0	0	0.32112	1	3296	3296		0.45834	0	1	71586	+		33715	13126	19679	19680	41101	41101					-0.05217315765253261
PPVPPAFTPKI	11	Unmodified	_PPVPPAFTPKI_					0	0	0			REV__ENST00000559018.1_1_10:135076662-135077335:-|nuORF	REV__ENST00000559018.1_1_10:135076662-135077335:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.3447875976562	2	582.344792	1162.67503	0.20002	0.00011648	0.18457	0.00010748	0.3846	0.00022397	582.3448091055033	57.3	1.4375	57.283	56.946	58.383	-0.0172					144	52	4	0	0	0	0.18241	1	13812	13812		32.786	32.786	1	5468700	+		33716	16547	19680	19681	41102	41102					0.10020052442200722
PPVPTPQSTLF	11	Unmodified	_PPVPTPQSTLF_					0	0	0		ENST00000484763.1_1_14:50582563-50582965:-|nuORF;nc|ENSG00000100483|Q9H867-2|VCPKMT	ENST00000484763.1_1_14:50582563-50582965:-|nuORF	ENST00000484763.1_1_14:50582563-50582965:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.82275390625	2	592.321514	1182.62847	-0.23488	-0.00013912	-0.037848	-2.2418E-05	-0.27272	-0.00016154	592.321412157631	60.067	0.53925	60.162	59.907	60.447	0.095093					55	19	4	0	0	0	0.15851	1	14716	14716		34.932	5.8505	1	1196700			33717	11078	19681	19682	41103	41103					0.04446567820264136
PPVPTPQSTLF	11	Unmodified	_PPVPTPQSTLF_					0	0	0		ENST00000484763.1_1_14:50582563-50582965:-|nuORF;nc|ENSG00000100483|Q9H867-2|VCPKMT	ENST00000484763.1_1_14:50582563-50582965:-|nuORF	ENST00000484763.1_1_14:50582563-50582965:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.80126953125	2	592.321514	1182.62847	0.21263	0.00012594	-1.3401	-0.00079378	-1.1275	-0.00066783	592.3205674920191	59.544	0.52508	59.639	59.382	59.907	0.095093					44	18	3	0	0	0	0.24176	1	14530	14530		41.956	2.0059	1	1081500			33718	11078	19681	19682	41104	41104					0.04446567820264136
PPVQCDVLSC	10	Unmodified	_PPVQCDVLSC_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7437133789062	2	530.743728	1059.4729	0.075048	3.9831E-05	0.27876	0.00014795	0.35381	0.00018778	530.7437947530512	27.639	0.60025	27.618	27.437	28.038	-0.021412					39	20	3	0	0	0	0.3258	1	4737	4737		17.113	1.2657	1	233900	+		33719	23156	19682	19683	41105	41105					-0.054455422971386724
PPVQCDVLSC	10	Unmodified	_PPVQCDVLSC_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3062133789062	2	530.743728	1059.4729	0.075048	3.9831E-05	0.27876	0.00014795	0.35381	0.00018778	530.7437947530512	27.639	0.60025	27.618	27.437	28.038	-0.021412					39	20	3	0	0	0	0.31237	1	4690	4690		16.149	5.3252	1	233900	+		33720	23156	19682	19683	41106	41106					-0.054455422971386724
PPVRDKLLL	9	Unmodified	_PPVRDKLLL_					0	0	0		nc|ENSG00000161180|Q8IYX3-1|CCDC116;nc|ENSG00000161180|Q8IYX3-3|CCDC116;ENSG00000161180|ENST00000292779|CCDC116	nc|ENSG00000161180|Q8IYX3-1|CCDC116	nc|ENSG00000161180|Q8IYX3-1|CCDC116	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8370361328125	2	525.837134	1049.65972	0.35338	0.00018582	-0.63708	-0.000335	-0.2837	-0.00014918	525.836711093691	61.611	0.83015	61.611	61.254	62.084	0					67	30	3	0	0	0	0.051692	1	15186	15186		52.268	8.4101	1	630180			33721	5509	19683	19684	41107	41107					0.1368718564503979
PPVTHSTPVTV	11	Unmodified	_PPVTHSTPVTV_					0	0	0		ENST00000535376.5_1_12:1023254-1025717:-|nuORF;ENST00000488642.6_1_12:1023254-1036092:-|nuORF;ENST00000228345.9_1_12:1022559-1036092:-|nuORF;RAD52|p.T366Ifs*32|1|0.04|ENSG00000002016|chr12:913992-913993|-/AATTTTTGAGGAAGGA|frameshift_variant;ENSG00000002016|ENST00000358495|RAD52	ENST00000535376.5_1_12:1023254-1025717:-|nuORF	ENST00000535376.5_1_12:1023254-1025717:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2846069335938	2	567.811313	1133.60807	0.11709	6.6487E-05	-1.0035	-0.00056982	-0.88644	-0.00050333	567.8109834807238	27.271	0.32822	27.271	27.146	27.474	0					15	10	2	0	0	0	0.32951	1	4666	4666		8.7454	2.0222	1	54073			33722	292	19684	19685	41108	41108					0.04661397160452907
PPWKALSEF	9	Unmodified	_PPWKALSEF_					0	0	0		ENSG00000159556|ENST00000290759|ISL2	ENSG00000159556|ENST00000290759|ISL2	ENSG00000159556|ENST00000290759|ISL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2965087890625	2	537.784567	1073.55458	0.4699	0.00025271	1.7472	0.00093964	2.2171	0.0011923	538.2863194899533	30.234	0.10623	30.262	30.218	30.324	0.027946					5	3	2	0	0	0	0.25323	1	5527	5527		10.074	0	1	69370			33723	5413	19685	19686	41109	41109					0.020746444486121618
PPWRNVPR	8	Unmodified	_PPWRNVPR_					0	0	0		ENST00000476870.5_1_7:100465042-100470283:+|nuORF	ENST00000476870.5_1_7:100465042-100470283:+|nuORF	ENST00000476870.5_1_7:100465042-100470283:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2900085449219	2	511.288143	1020.56173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.72	1	118.72	118.22	119.22	0								0	0	0	0.37992	1	30659	30659		0.79363	0.10326	1				33724	10950	19686	19687	41110	41110					0.05227421839697399
PPWSSPQAGV	10	Unmodified	_PPWSSPQAGV_					0	0	0			REV__ENST00000361906.7_1_22:38615713-38615971:-|nuORF	REV__ENST00000361906.7_1_22:38615713-38615971:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2572631835938	2	513.256174	1024.49779	-0.11735	-6.0229E-05	4.323	0.0022188	4.2057	0.0021586	513.2584452850352	24.917	0.33797	24.886	24.709	25.047	-0.031408					16	9	2	0	0	0	0.39935	1	3917	3917		3.5965	0.31518	1	53126	+		33725	20290	19687	19688	41111	41111					-0.013474031079113047
PPWSSPQAGV	10	Unmodified	_PPWSSPQAGV_					0	0	0			REV__ENST00000361906.7_1_22:38615713-38615971:-|nuORF	REV__ENST00000361906.7_1_22:38615713-38615971:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.256174	1024.49779	0.29931	0.00015362	4.0598	0.0020837	4.3591	0.0022373	513.2582890810255	24.875	0.33774	24.875	24.673	25.011	0	-0.0053699	-0.00014495	NaN	3.5965	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53848	+		33726	20290	19687	19688							-0.013474031079113047
PPWSSPQAGV	10	Unmodified	_PPWSSPQAGV_					0	0	0			REV__ENST00000361906.7_1_22:38615713-38615971:-|nuORF	REV__ENST00000361906.7_1_22:38615713-38615971:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	513.256174	1024.49779	-0.11735	-6.0229E-05	4.323	0.0022188	4.2057	0.0021586	513.2584452850352	24.917	0.33797	24.886	24.709	25.047	-0.031408	0.0053699	0.00012522	NaN	3.5965	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53126	+		33727	20290	19687	19688							-0.013474031079113047
PPWWHRRAW	9	Unmodified	_PPWWHRRAW_					0	0	0		ENST00000590064.1_1_19:3751262-3751373:-|nuORF;ENST00000588984.5_1_19:3751262-3752524:-|nuORF;ENST00000586991.1_1_19:3751262-3751582:-|nuORF	ENST00000590064.1_1_19:3751262-3751373:-|nuORF	ENST00000590064.1_1_19:3751262-3751373:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	646.3341674804688	2	646.333416	1290.65228	-0.073486	-4.7497E-05	1.2033	0.00077774	1.1298	0.00073024	646.3341675080078	12.564	0.26469	12.496	12.405	12.67	-0.068059					17	8	3	0	0	0	0.35512	1	173	173		0.6015	0.076735	1	45103			33728	12126	19688	19689	41112	41112					0.018578908879590017
PPYLMDEHSK	10	Unmodified	_PPYLMDEHSK_					0	0	0			REV__ENST00000553956.6_1_17:62510355-62528036:+|nuORF	REV__ENST00000553956.6_1_17:62510355-62528036:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.31689453125	2	608.786981	1215.55941	0.38385	0.00023368	2.0819	0.0012674	2.4657	0.0015011	608.7885513815614	33.412	0.49788	33.412	33.202	33.7	0					35	17	3	0	0	0	0.31958	1	6549	6549		2.7352	0	1	187010	+		33729	19272	19689	19690	41113	41113					-0.039748394709477
PPYPMKIAP	9	Unmodified	_PPYPMKIAP_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENST00000547085.1_1_12:112600816-112607652:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.31976318359375	2	507.278063	1012.54157	0.012173	6.1751E-06	0.0004668	2.368E-07	0.01264	6.4119E-06	507.2782779944207	14.537	0.53797	14.537	14.221	14.759	0					28	18	2	0	0	0	0.25879	1	799	799		4.756	0.42677	1	57496			33730	6689	19690	19691	41114	41114					0.035804900648713556
PPYVPGFCVVA	11	Unmodified	_PPYVPGFCVVA_					0	0	0			REV__ENST00000523771.5_1_14:91581270-91581339:+|nuORF	REV__ENST00000523771.5_1_14:91581270-91581339:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.7760620117188	2	574.794078	1147.5736	0.11202	6.4388E-05	-1.4327	-0.00082351	-1.3207	-0.00075912	574.7932556915738	24.013	0.39071	24.013	23.829	24.22	0					18	13	2	0	0	0	0.45819	1	3679	3679		3.5965	0.60125	1	50865	+		33731	21914	19691	19692	41115	41115					0.005718577480365639
PQAAQQTEAL	10	Unmodified	_PQAAQQTEAL_					0	0	0		ENSG00000171163|ENST00000306601|ZNF692;nc|ENSG00000171163|Q9BU19-5|ZNF692;nc|ENSG00000171163|Q9BU19-3|ZNF692;nc|ENSG00000171163|Q9BU19-2|ZNF692;ENST00000533927.5_1_1:249149922-249151721:-|nuORF;ENST00000470787.6_1_1:249149922-249153146:-|nuORF;ENST00000491971.5_1_1:249149922-249151721:-|nuORF	ENSG00000171163|ENST00000306601|ZNF692	ENSG00000171163|ENST00000306601|ZNF692	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8300170898438	2	528.769645	1055.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.099	1	12.031	11.531	12.531	-0.06806								0	0	0	0.38126	1	25	25		1.6526	0.17072	1				33732	6520	19692	19693	41116	41116					-0.0008033928738768736
PQAEVLSQAHA	11	Unmodified	_PQAEVLSQAHA_					0	0	0			REV__nc|ENSG00000105953|Q02218-2|OGDH	REV__nc|ENSG00000105953|Q02218-2|OGDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7960205078125	2	575.796195	1149.57784	-0.12651	-7.2842E-05	-0.072244	-4.1598E-05	-0.19875	-0.00011444	575.7959151057706	28.079	0.58747	28.08	27.879	28.466	0.0004673					32	20	2	0	0	0	0.46969	1	4935	4935		2.086	0.026257	1	132810	+		33733	14495	19693	19694	41117	41117					0.009030384952893655
PQAEVLSQAHA	11	Unmodified	_PQAEVLSQAHA_					0	0	0			REV__nc|ENSG00000105953|Q02218-2|OGDH	REV__nc|ENSG00000105953|Q02218-2|OGDH	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	575.796195	1149.57784	-0.15858	-9.1307E-05	-0.50353	-0.00028993	-0.66211	-0.00038124	575.7958090407669	28.145	0.43987	28.145	27.87	28.31	0	0.032289	-0.00044443	NaN	2.086	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122600	+		33734	14495	19693	19694							0.009030384952893655
PQAEVLSQAHA	11	Unmodified	_PQAEVLSQAHA_					0	0	0			REV__nc|ENSG00000105953|Q02218-2|OGDH	REV__nc|ENSG00000105953|Q02218-2|OGDH	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	575.796195	1149.57784	0.055766	3.211E-05	0.22651	0.00013042	0.28227	0.00016253	575.7964310779989	28.117	0.39387	28.113	27.912	28.306	-0.0042572	0.00019134	0.00039628	NaN	2.086	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128910	+		33735	14495	19693	19694							0.009030384952893655
PQAEVLSQAHA	11	Unmodified	_PQAEVLSQAHA_					0	0	0			REV__nc|ENSG00000105953|Q02218-2|OGDH	REV__nc|ENSG00000105953|Q02218-2|OGDH	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	575.796195	1149.57784	-0.12651	-7.2842E-05	-0.072244	-4.1598E-05	-0.19875	-0.00011444	575.7959151057706	28.079	0.58747	28.08	27.879	28.466	0.0004673	-0.032481	5.224E-05	NaN	2.086	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132810	+		33736	14495	19693	19694							0.009030384952893655
PQAVSRHL	8	Unmodified	_PQAVSRHL_					0	0	0		ENST00000559353.5_3_15:91416315-91418918:+|nuORF	ENST00000559353.5_3_15:91416315-91418918:+|nuORF	ENST00000559353.5_3_15:91416315-91418918:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.57958984375	2	454.259051	906.503549	0.0040118	1.8224E-06	0.60922	0.00027674	0.61323	0.00027857	454.2590843487412	26.169	0.8885	26.169	25.9	26.789	0					65	30	4	0	0	0	0.34198	1	4261	4261		10.824	1.4765	1	240560			33737	11883	19694	19695	41118	41118					0.046557401944255616
PQAWKDRFI	9	Unmodified	_PQAWKDRFI_					0	0	0		ENST00000573846.1_1_16:67976245-67976785:-|nuORF;LCAT|p.L338Pfs*24|1|0.24|ENSG00000213398|chr16:67940201-67940214|GCCCACGCCGTAAA/-|frameshift_variant;ENSG00000213398|ENST00000264005|LCAT	ENST00000573846.1_1_16:67976245-67976785:-|nuORF	ENST00000573846.1_1_16:67976245-67976785:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8117065429688	2	580.81419	1159.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.2	1	13.1	12.6	13.6	-0.099291								0	0	0	0.26513	1	355	355		1.4819	0.15237	1				33738	8342	19695	19696	41119	41119					0.04040540462779063
PQEAPVGNSL	10	Unmodified	_PQEAPVGNSL_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2593688964844	2	506.258914	1010.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.688	1	80.753	80.253	81.253	0.065094								0	0	0	0.35611	1	20974	20974		12.241	2.1667	1				33739	4810	19696	19697	41120	41120					-0.0015572431608461557
PQEDRIKN	8	Unmodified	_PQEDRIKN_					0	0	0			REV__ENSG00000122376|ENST00000298786|SHLD2	REV__ENSG00000122376|ENST00000298786|SHLD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7986755371094	2	500.26453	998.514508	-0.034575	-1.7297E-05	-2.4974	-0.0012493	-2.5319	-0.0012666	500.7642329478081	18.69	0.1106	18.631	18.57	18.681	-0.058174					5	3	2	0	0	0	0.33245	1	2021	2021		13.508	6.2187	1	13606	+		33740	15155	19697	19698	41121	41121					0.015190977780321191
PQEKDVWEE	9	Unmodified	_PQEKDVWEE_					0	0	0		nc|ENSG00000128881|Q6IQ55-3|TTBK2;nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	nc|ENSG00000128881|Q6IQ55-3|TTBK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8362426757812	2	580.266936	1158.51932	0.35509	0.00020605	-3.6351	-0.0021093	-3.28	-0.0019033	581.270400370166	29.97	0.25634	29.982	29.803	30.06	0.012266					14	8	3	0	0	0	0.26188	1	5408	5408		1.6526	0.17072	1	178150			33741	3396	19698	19699	41122	41122					-0.053600628698632136
PQFPPALRLRA	11	Unmodified	_PQFPPALRLRA_					0	0	0		nc|ENSG00000176753|Q8N910|PAK6-AS1	nc|ENSG00000176753|Q8N910|PAK6-AS1	nc|ENSG00000176753|Q8N910|PAK6-AS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2406921386719	3	422.587418	1264.74043	0.068142	2.8796E-05	-3.8539	-0.0016286	-3.7857	-0.0015998	422.58578346585557	26.385	0.33877	26.363	26.133	26.472	-0.022236					19	11	2	0	0	0	0.3325	1	4334	4334		4.1166	0.79699	1	42270			33742	12855	19699	19700	41123	41123					0.1186446668791632
PQFQLKPI	8	Unmodified	_PQFQLKPI_					0	0	0			REV__ENSG00000172382|ENST00000302641|PRSS27	REV__ENSG00000172382|ENST00000302641|PRSS27	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80035400390625	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.369	1	80.369	79.869	80.869	0								0	0	0	0.35663	1	20885	20885		11.64	0	1		+		33743	17709	19700	19701	41124	41124					0.07875252173846548
PQFTDNTI	8	Unmodified	_PQFTDNTI_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.22503662109375	2	468.227082	934.439611	0.35643	0.00016689	-3.1072	-0.0014549	-2.7508	-0.001288	468.2251744222941	72.965	0.55499	72.936	72.684	73.239	-0.029305					31	19	2	0	0	0	0.095164	1	18636	18636		61.357	9.0891	1	110640	+		33744	14789	19701	19702	41125	41125					-0.030230847531811378
PQFTDNTI	8	Unmodified	_PQFTDNTI_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	468.227082	934.439611	0.1302	6.0962E-05	-3.2003	-0.0014985	-3.0701	-0.0014375	468.2253423007015	72.932	0.524	72.932	72.639	73.163	0	-0.0018671	-4.0297E-05	NaN	61.357	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137190	+		33745	14789	19701	19702							-0.030230847531811378
PQFTDNTI	8	Unmodified	_PQFTDNTI_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	REV__nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	468.227082	934.439611	0.35643	0.00016689	-3.1072	-0.0014549	-2.7508	-0.001288	468.2251744222941	72.965	0.55499	72.936	72.684	73.239	-0.029305	0.0018671	4.6904E-05	NaN	61.357	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110640	+		33746	14789	19701	19702							-0.030230847531811378
PQGLNNWAVF	10	Unmodified	_PQGLNNWAVF_					0	0	0			REV__PPM1K|p.S248N|1|0.37|ENSG00000163644|chr4:88268299-88268299|C/T|missense_variant	REV__PPM1K|p.S248N|1|0.37|ENSG00000163644|chr4:88268299-88268299|C/T|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.287841796875	2	573.290548	1144.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.279	1	76.248	75.748	76.748	-0.031487								0	0	0	0.33119	1	19624	19624		22.736	1.8651	1		+		33747	23289	19702	19703	41126	41126					4.261191793375474E-05
PQGLRFLH	8	Unmodified	_PQGLRFLH_					0	0	0		ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.6471252441406	2	484.277244	966.539935	0.20715	0.00010032	-1.8893	-0.00091495	-1.6822	-0.00081463	484.27584774887214	43.241	0.35232	43.241	43.062	43.414	0					17	12	2	0	0	0	0.34337	1	9450	9450		5.2307	0	1	123410			33748	4972	19703	19704	41127	41127					0.05532617091125758
PQGNRTMC	8	Unmodified	_PQGNRTMC_					0	0	0		nc|ENSG00000140798|Q96J65-5|ABCC12;nc|ENSG00000140798|Q96J65-3|ABCC12;nc|ENSG00000140798|Q96J65-2|ABCC12;nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12	nc|ENSG00000140798|Q96J65-5|ABCC12	nc|ENSG00000140798|Q96J65-5|ABCC12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7483215332031	2	453.699654	905.384756	-0.0094324	-4.2795E-06	-0.082537	-3.7447E-05	-0.09197	-4.1727E-05	453.69961201294933	15.997	0.56602	15.997	15.867	16.433	0					28	19	2	0	0	0	0.34408	1	1193	1193		2.3027	0	1	42229			33749	4335	19704	19705	41128	41128					-0.0717211809710534
PQGNRTMC	8	Unmodified	_PQGNRTMC_					0	0	0		nc|ENSG00000140798|Q96J65-5|ABCC12;nc|ENSG00000140798|Q96J65-3|ABCC12;nc|ENSG00000140798|Q96J65-2|ABCC12;nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12	nc|ENSG00000140798|Q96J65-5|ABCC12	nc|ENSG00000140798|Q96J65-5|ABCC12	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	453.699654	905.384756	0.03788	1.7186E-05	-0.0043333	-1.966E-06	0.033547	1.522E-05	453.6996996428459	16.076	0.63078	16.014	15.838	16.468	-0.062534	0.0061573	-4.0394E-06	NaN	2.3027	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45001			33750	4335	19704	19705							-0.0717211809710534
PQHILLQEL	9	Unmodified	_PQHILLQEL_					0	0	0			REV__ENSG00000165695|ENST00000298545|AK8	REV__ENSG00000165695|ENST00000298545|AK8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8294677734375	2	545.816399	1089.61824	0.40602	0.00022161	1.3504	0.00073705	1.7564	0.00095866	545.8173029287076	67.222	0.68684	67.206	66.736	67.423	-0.016296					43	23	3	0	0	0	0.069366	2	16891	16891;16915		45.7	16.618	1	425530	+		33751	17257	19705	19706	41129;41130	41129					0.07702004885709357
PQHPLVAQK	9	Unmodified	_PQHPLVAQK_					0	0	0			REV__ENSG00000072840|ENST00000264956|EVC	REV__ENSG00000072840|ENST00000264956|EVC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2811279296875	2	509.295633	1016.57671	0.42748	0.00021771	-0.84297	-0.00042932	-0.41549	-0.00021161	509.2950733209752	30.097	0.49954	30.097	29.86	30.359	0					33	16	3	0	0	0	0.28674	1	5495	5495		10.824	0	1	291570	+		33752	13767	19706	19707	41131	41131					0.06908868917025757
PQHQFEYFY	9	Unmodified	_PQHQFEYFY_					0	0	0			REV__nc|ENSG00000172831|O00748-2|CES2	REV__nc|ENSG00000172831|O00748-2|CES2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.7800903320312	2	629.780013	1257.54547	0.20854	0.00013134	-0.05532	-3.484E-05	0.15322	9.6498E-05	629.7800358729882	61.487	2.8396	61.487	61.128	63.967	0					324	105	5	0	0	0	0.14076	7	15093	15042;15093;15190;15243;15292;15390;15440		32.305	9.5521	1	32640000	+		33753	17739	19707	19708	41132;41133;41134;41135;41136;41137;41138	41133					-0.07299748907712456
PQHQFEYFY	9	Unmodified	_PQHQFEYFY_					0	0	0			REV__nc|ENSG00000172831|O00748-2|CES2	REV__nc|ENSG00000172831|O00748-2|CES2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.7801513671875	2	629.780013	1257.54547	-0.13417	-8.4499E-05	0.24382	0.00015355	0.10965	6.9053E-05	629.7802754849546	61.421	2.901	61.518	61.194	64.095	0.096985					326	105	6	0	0	0	0.18803	6	15076	15028;15076;15118;15215;15267;15317		25.399	5.8995	1	33641000	+		33754	17739	19707	19708	41139;41140;41141;41142;41143;41144	41140					-0.07299748907712456
PQHQFEYFY	9	Unmodified	_PQHQFEYFY_					0	0	0			REV__nc|ENSG00000172831|O00748-2|CES2	REV__nc|ENSG00000172831|O00748-2|CES2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.2821044921875	2	629.780013	1257.54547	-0.13417	-8.4499E-05	0.24382	0.00015355	0.10965	6.9053E-05	629.7802754849546	61.421	2.901	61.518	61.194	64.095	0.096985					326	105	6	0	0	0	0.22596	1	15028	15028		21.747	5.8995	1	33641000	+		33755	17739	19707	19708	41145	41145					-0.07299748907712456
PQHQFEYFY	9	Unmodified	_PQHQFEYFY_					0	0	0			REV__nc|ENSG00000172831|O00748-2|CES2	REV__nc|ENSG00000172831|O00748-2|CES2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.7802734375	2	629.780013	1257.54547	0.051319	3.232E-05	0.046845	2.9502E-05	0.098164	6.1822E-05	629.7801794335297	61.543	3.8877	61.533	61.162	65.05	-0.0094566					384	142	6	0	0	0	0.18803	7	15184	15042;15090;15140;15184;15233;15284;15341		25.399	4.3045	1	35994000	+		33756	17739	19707	19708	41146;41147;41148;41149;41150;41151;41152	41149					-0.07299748907712456
PQHRPKLG	8	Unmodified	_PQHRPKLG_					0	0	0		ENST00000304031.7_1_2:20818265-20818517:-|nuORF	ENST00000304031.7_1_2:20818265-20818517:-|nuORF	ENST00000304031.7_1_2:20818265-20818517:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.77392578125	2	466.774868	931.535184	-0.19653	-9.1736E-05	-1.5682	-0.000732	-1.7647	-0.00082373	466.7741397996561	13.271	0.36594	13.204	13.022	13.388	-0.067496					16	12	2	0	0	0	0.344	1	379	379		2.5775	0.27475	1	47417			33757	9254	19708	19709	41153	41153					0.06667732948369576
PQHRPKLG	8	Unmodified	_PQHRPKLG_					0	0	0		ENST00000304031.7_1_2:20818265-20818517:-|nuORF	ENST00000304031.7_1_2:20818265-20818517:-|nuORF	ENST00000304031.7_1_2:20818265-20818517:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	466.774868	931.535184	-0.29813	-0.00013916	-1.1132	-0.00051963	-1.4114	-0.0006588	466.77428837692736	13.267	0.26871	13.168	13.069	13.337	-0.099291	-0.017847	0.00026934	NaN	2.5775	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37639			33758	9254	19708	19709							0.06667732948369576
PQIDHTKKL	9	Unmodified	_PQIDHTKKL_					0	0	0		ENST00000494673.1_1_6:31243358-31244615:+|nuORF	ENST00000494673.1_1_6:31243358-31244615:+|nuORF	ENST00000494673.1_1_6:31243358-31244615:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.314208984375	2	540.314023	1078.61349	0.78683	0.00042513	-0.21757	-0.00011755	0.56926	0.00030758	540.3136961527226	47.119	0.79321	47.119	46.84	47.634	0					69	27	4	0	0	0	0.16283	1	10682	10682		29.082	7.5446	1	1457800			33759	11210	19709	19710	41154	41154					0.0773312074295518
PQIDHTKKL	9	Unmodified	_PQIDHTKKL_					0	0	0		ENST00000494673.1_1_6:31243358-31244615:+|nuORF	ENST00000494673.1_1_6:31243358-31244615:+|nuORF	ENST00000494673.1_1_6:31243358-31244615:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.31396484375	2	540.314023	1078.61349	0.4522	0.00024433	0.15124	8.1718E-05	0.60344	0.00032605	540.3139419308176	47.056	0.72728	47.108	46.817	47.544	0.052574					65	26	3	0	0	0	0.17277	2	10633	10633;10679		27.629	4.8925	1	1472200			33760	11210	19709	19710	41155;41156	41155					0.0773312074295518
PQIDHTKKL	9	Unmodified	_PQIDHTKKL_					0	0	0		ENST00000494673.1_1_6:31243358-31244615:+|nuORF	ENST00000494673.1_1_6:31243358-31244615:+|nuORF	ENST00000494673.1_1_6:31243358-31244615:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3143920898438	2	540.314023	1078.61349	1.146	0.00061919	-0.38865	-0.00020999	0.75734	0.0004092	540.313647384338	47.062	0.77089	47.116	46.877	47.648	0.054371					65	27	4	0	0	0	0.24467	1	10709	10709		17.113	3.2068	1	1584100			33761	11210	19709	19710	41157	41157					0.0773312074295518
PQINQVER	8	Unmodified	_PQINQVER_					0	0	0			REV__ENSG00000162621|ENST00000294635|LRRC53	REV__ENSG00000162621|ENST00000294635|LRRC53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.7828063964844	2	492.267073	982.519593	0.30994	0.00015257	-0.38669	-0.00019035	-0.07675	-3.7782E-05	492.26676484205245	17.593	0.53915	17.593	17.296	17.835	0					28	18	2	0	0	0	0.4419	1	1695	1695		8.5933	0.68312	1	77364	+		33762	16993	19710	19711	41158	41158					0.027634016406636874
PQIQISDLLP	10	Unmodified	_PQIQISDLLP_					0	0	0			REV__ENST00000468151.1_1_22:41997103-41998504:-|nuORF	REV__ENST00000468151.1_1_22:41997103-41998504:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3219604492188	2	562.321514	1122.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.634	1	96.634	96.134	97.134	0								0	0	0	0.37581	1	25824	25824		3.9444	0	1		+		33763	14194	19711	19712	41159	41159					0.07206567820298915
PQIQISDLLP	10	Unmodified	_PQIQISDLLP_					0	0	0			REV__ENST00000468151.1_1_22:41997103-41998504:-|nuORF	REV__ENST00000468151.1_1_22:41997103-41998504:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3218994140625	2	562.321514	1122.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.957	1	96.951	96.451	97.451	-0.0055466								0	0	0	0.36922	1	25942	25942		6.7232	2.3939	1		+		33764	14194	19711	19712	41160	41160					0.07206567820298915
PQKLIKQR	8	Unmodified	_PQKLIKQR_					0	0	0			REV__ENSG00000168152|ENST00000302236|THAP9	REV__ENSG00000168152|ENST00000302236|THAP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2555847167969	2	505.827101	1009.63965	0.076029	3.8457E-05	0.33642	0.00017017	0.41245	0.00020863	505.8271541814294	15.088	0.30325	14.978	14.818	15.121	-0.10981					14	10	2	0	0	0	0.34408	1	902	902		2.3027	1.6124	1	71014	+		33765	17444	19712	19713	41161	41161					0.13521434705080537
PQKWSHLDE	9	Unmodified	_PQKWSHLDE_					0	0	0			REV__ENSG00000124203|ENST00000371030|ZNF831	REV__ENSG00000124203|ENST00000371030|ZNF831	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8226318359375	2	570.277638	1138.54072	-0.054024	-3.0809E-05	-0.18092	-0.00010317	-0.23494	-0.00013398	570.2780828344836	14.883	0.35773	14.883	14.623	14.981	0					21	12	3	0	0	0	0.26168	1	824	824		1.8442	0	1	66203	+		33766	15220	19713	19714	41162	41162					-0.023006330504813377
PQLARIPGV	9	Unmodified	_PQLARIPGV_					0	0	0		ENST00000532150.1_1_11:75917479-75921696:-|nuORF	ENST00000532150.1_1_11:75917479-75921696:-|nuORF	ENST00000532150.1_1_11:75917479-75921696:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.2116394042969	2	475.792727	949.5709	-0.10737	-5.1084E-05	-0.72328	-0.00034413	-0.83064	-0.00039521	475.79237409798867	13.534	0.50119	13.434	13.217	13.718	-0.099291					22	17	2	0	0	0	0.26168	1	398	398		1.8442	0	1	67569			33767	11636	19714	19715	41163	41163					0.09409770405375184
PQLARIPGV	9	Unmodified	_PQLARIPGV_					0	0	0		ENST00000532150.1_1_11:75917479-75921696:-|nuORF	ENST00000532150.1_1_11:75917479-75921696:-|nuORF	ENST00000532150.1_1_11:75917479-75921696:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	475.792727	949.5709	-0.18884	-8.9849E-05	-0.73055	-0.00034759	-0.91939	-0.00043744	475.79234860641856	13.462	0.28474	13.462	13.282	13.567	0	0.014454	-3.5397E-05	NaN	1.8442	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64761			33768	11636	19714	19715							0.09409770405375184
PQLARIPGV	9	Unmodified	_PQLARIPGV_					0	0	0		ENST00000532150.1_1_11:75917479-75921696:-|nuORF	ENST00000532150.1_1_11:75917479-75921696:-|nuORF	ENST00000532150.1_1_11:75917479-75921696:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	475.792727	949.5709	-0.13774	-6.5537E-05	-0.61395	-0.00029211	-0.75169	-0.00035765	475.7923903104097	13.514	0.43879	13.447	13.275	13.714	-0.067496	-0.0011422	7.5552E-05	NaN	1.8442	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71088			33769	11636	19714	19715							0.09409770405375184
PQLGEQALRQL	11	Unmodified	_PQLGEQALRQL_					0	0	0			REV__ENST00000555759.1_1_14:95918480-95934190:-|nuORF	REV__ENST00000555759.1_1_14:95918480-95934190:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.5752258300781	3	418.238455	1251.69353	-0.02244	-9.3854E-06	-1.4533	-0.00060782	-1.4757	-0.00061721	418.2375216406627	15.951	0.25009	15.888	15.756	16.006	-0.062533					15	8	3	0	0	0	0.33287	1	1202	1202		1.3296	0	1	25110	+		33770	17939	19715	19716	41164	41164					0.07775562346114384
PQLIEPFFT	9	Unmodified	_PQLIEPFFT_					0	0	0			REV__ENSG00000126062|ENST00000266025|TMEM115	REV__ENSG00000126062|ENST00000266025|TMEM115	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.291015625	2	546.292225	1090.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.66	1	104.66	104.16	105.16	0.0011444								0	0	0	0.25631	1	27809	27809		4.3292	0	1		+		33771	15299	19716	19717	41165	41165					0.028235112458105505
PQLLELGLVQS	11	Unmodified	_PQLLELGLVQS_					0	0	0		nc|ENSG00000198183|Q9NP55-2|BPIFA1;ENSG00000198183|ENST00000354297|BPIFA1	nc|ENSG00000198183|Q9NP55-2|BPIFA1	nc|ENSG00000198183|Q9NP55-2|BPIFA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.8465576171875	2	598.847896	1195.68124	0.34263	0.00020518	-1.8069	-0.0010821	-1.4643	-0.0008769	598.8465506404859	18.347	0.4278	18.347	18.077	18.505	0					25	14	2	0	0	0	0.47825	1	1903	1903		0.96228	0.43751	1	50787			33772	8047	19717	19718	41166	41166					0.0912252588307183
PQLPPALA	8	Unmodified	_PQLPPALA_					0	0	0		ENST00000560821.1_1_15:91352032-91358506:+|nuORF	ENST00000560821.1_1_15:91352032-91358506:+|nuORF	ENST00000560821.1_1_15:91352032-91358506:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.5945739746094	2	403.742171	805.469789	-0.46408	-0.00018737	-3.0897	-0.0012474	-3.5537	-0.0014348	403.7408118982866	12.552	0.14254	12.455	12.409	12.552	-0.096607					7	4	2	0	0	0	0.34434	1	156	156		0.79363	0	1	9061.8			33773	11904	19718	19719	41167	41167					0.05927318702640605
PQLQASPGS	9	Unmodified	_PQLQASPGS_					0	0	0			REV__ENST00000256257.1_1_8:33406185-33406224:-|nuORF	REV__ENST00000256257.1_1_8:33406185-33406224:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.76885986328125	2	442.727249	883.439946	-0.056694	-2.51E-05	-3.727	-0.0016501	-3.7837	-0.0016752	442.72707155620674	17.627	0.37144	17.51	17.323	17.694	-0.11739					17	12	2	0	0	0	0.25622	1	1720	1720		3.9444	0	1	18062	+		33774	19552	19719	19720	41168	41168					-0.006436650333284888
PQLQEQLRLQ	10	Unmodified	_PQLQEQLRLQ_					0	0	0		UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant;ENSG00000160803|ENST00000368309|UBQLN4	UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant	UBQLN4|p.A529Lfs*12|1|0.28|ENSG00000160803|chr1:156041553-156041553|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.5751953125	3	418.238455	1251.69353	-0.23194	-9.7007E-05	-1.0862	-0.00045428	-1.3181	-0.00055129	418.2379730731661	15.886	0.30028	15.886	15.763	16.063	0					20	10	3	0	0	0	0.32068	1	1188	1188		3.5871	1.6807	1	26862			33775	5491	19720	19721	41169	41169					0.07775562346114384
PQLSAWTI	8	Unmodified	_PQLSAWTI_					0	0	0		ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	ENSG00000214414|ENST00000398290|TRIM77	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.76165771484375	2	458.25036	914.486168	-0.25383	-0.00011632	-4.3204	-0.0019798	-4.5743	-0.0020962	458.2478754440842	13.145	0.39624	13.145	13.031	13.427	0					29	13	3	0	0	0	0.34408	1	402	402		2.3027	0	1	71668			33776	8384	19721	19722	41170	41170					0.025503998687554486
PQLTVKGRN	9	Unmodified	_PQLTVKGRN_					0	0	0		ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7590026855469	2	506.79854	1011.58253	0.11064	5.607E-05	-0.14955	-7.5794E-05	-0.038919	-1.9724E-05	506.79841589263947	28.811	0.52395	28.811	28.55	29.074	0.0004673					28	18	2	0	0	0	0.25706	1	5145	5145		6.7232	1.4925	1	115030			33777	8203	19722	19723	41171	41171					0.0771996742871579
PQLTVKGRN	9	Unmodified	_PQLTVKGRN_					0	0	0		ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	506.79854	1011.58253	0.30703	0.0001556	-0.30899	-0.0001566	-0.001959	-9.9284E-07	506.7981818497258	28.746	0.5684	28.746	28.548	29.117	0	-0.032738	-6.3966E-05	NaN	6.7232	31	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110260			33778	8203	19722	19723							0.0771996742871579
PQNQAEIRE	9	Unmodified	_PQNQAEIRE_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3	REV__ENSG00000109063|ENST00000583535|MYH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.371826171875	2	542.772719	1083.53089	0.3049	0.00016549	0.061069	3.3146E-05	0.36597	0.00019864	542.7726425883964	16.085	0.40347	16.085	15.892	16.295	0					28	13	3	0	0	0	0.25526	1	1238	1238		7.9102	0	1	88730	+		33779	14624	19723	19724	41172	41172					-0.007538210558550418
PQNQAEIRE	9	Unmodified	_PQNQAEIRE_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3	REV__ENSG00000109063|ENST00000583535|MYH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.371826171875	2	542.772719	1083.53089	0.33774	0.00018332	-0.18813	-0.00010211	0.14961	8.1202E-05	542.7726412440875	16.245	0.55349	16.131	15.894	16.448	-0.11434					36	18	3	0	0	0	0.25526	1	1271	1271		7.9102	0	1	75147	+		33780	14624	19723	19724	41173	41173					-0.007538210558550418
PQNQAEIRE	9	Unmodified	_PQNQAEIRE_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3	REV__ENSG00000109063|ENST00000583535|MYH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.371826171875	2	542.772719	1083.53089	0.44944	0.00024394	-0.30396	-0.00016498	0.14548	7.8965E-05	542.7724403692628	16.095	0.4585	16.033	15.866	16.324	-0.062534					27	15	3	0	0	0	0.25526	1	1255	1255		4.3292	0	1	98277	+		33781	14624	19723	19724	41174	41174					-0.007538210558550418
PQNSIGSCIV	10	Unmodified	_PQNSIGSCIV_					0	0	0			REV__ENST00000539757.1_1_12:9459887-9464602:+|nuORF	REV__ENST00000539757.1_1_12:9459887-9464602:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.30572509765625	2	509.255317	1016.49608	0.45536	0.00023189	0.46575	0.00023718	0.92111	0.00046908	509.25556415231745	83.233	0.50246	83.213	82.949	83.451	-0.020576					29	19	2	0	0	0	0.27979	1	21751	21751		21.537	5.6898	1	124020	+		33782	13446	19724	19725	41175	41175					-0.011507801881521118
PQNVDSERSE	10	Unmodified	_PQNVDSERSE_					0	0	0		nc|ENSG00000078725|O60477-3|BRINP1;ENSG00000078725|ENST00000265922|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3358154296875	2	580.762549	1159.51054	0.34985	0.00020318	4.0368	0.0023444	4.3867	0.0025476	580.7657461582173	58.45	0.39769	58.541	58.342	58.74	0.091301					18	13	2	0	0	0	0.31629	1	14224	14224		10.074	3.3508	1	226600			33783	1115	19725	19726	41176	41176					-0.06283036506351891
PQPDVFPLF	9	Unmodified	_PQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2796020507812	2	530.279118	1058.54368	0.67629	0.00035862	-0.12041	-6.3851E-05	0.55588	0.00029477	530.2793382418625	86.776	2.7555	86.776	86.251	89.007	0					325	126	5	0	0	0	0.0033114	5	22803	22758;22803;22843;22891;23028		99.799	65.697	1	21149000			33784	8720	19726	19727	41177;41178;41179;41180;41181	41178					0.016752420743159746
PQPDVFPLF	9	Unmodified	_PQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2789306640625	2	530.279118	1058.54368	0.57349	0.00030411	-0.69653	-0.00036936	-0.12304	-6.5245E-05	530.2789624120476	89.761	1.066	89.761	89.348	90.414	0					183	82	3	0	0	0	0.27726	2	23849	23849;23928		12.241	0.60036	1	172300			33785	8720	19726	19727	41182;41183	41182					0.016752420743159746
PQPDVFPLF	9	Unmodified	_PQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2949829101562	2	530.279118	1058.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.791	1	92.791	92.291	93.291	0								0	0	0	0.22933	1	24693	24693		13.042	1.928	1				33786	8720	19726	19727	41184	41184					0.016752420743159746
PQPDVFPLF	9	Unmodified	_PQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2796630859375	2	530.279118	1058.54368	0.45405	0.00024077	0.063375	3.3606E-05	0.51742	0.00027438	530.2794866426166	86.611	2.9278	86.695	86.209	89.137	0.084251					436	133	6	0	0	0	0.0033114	6	22763	22763;22809;22848;23279;23447;23484		99.799	69.574	1	21567000			33787	8720	19726	19727	41185;41186;41187;41188;41189;41190	41185					0.016752420743159746
PQPDVFPLF	9	Unmodified	_PQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2974853515625	2	530.279118	1058.54368	0.45498	0.00024127	-0.6378	-0.00033821	-0.18282	-9.6945E-05	530.2790607172662	89.672	1.3868	89.762	89.143	90.53	0.090561					210	99	3	0	0	0	0.24467	2	23861	23861;23882		17.113	0.60036	1	199020			33788	8720	19726	19727	41191;41192	41191					0.016752420743159746
PQPDVFPLF	9	Unmodified	_PQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2954711914062	2	530.279118	1058.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.479	1	92.568	92.068	93.068	0.089195								0	0	0	0.22377	1	24593	24593		14.838	2.3067	1				33789	8720	19726	19727	41193	41193					0.016752420743159746
PQPDVFPLF	9	Unmodified	_PQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.279541015625	2	530.279118	1058.54368	0.62417	0.00033098	-0.12016	-6.3718E-05	0.50401	0.00026727	530.2793240494225	86.735	3.0418	86.729	86.26	89.302	-0.0056229					438	138	6	0	0	0	0.0033114	9	22783	22739;22783;22826;22869;22922;22979;23035;23254;23347		99.799	65.697	1	19506000			33790	8720	19726	19727	41194;41195;41196;41197;41198;41199;41200;41201;41202	41195					0.016752420743159746
PQPQQPFL	8	Unmodified	_PQPQQPFL_					0	0	0		ENSG00000139352|ENST00000266744|ASCL1	ENSG00000139352|ENST00000266744|ASCL1	ENSG00000139352|ENST00000266744|ASCL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7720642089844	2	477.75581	953.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.282	1	28.282	27.782	28.782	0								0	0	0	0.35251	1	4912	4912		13.508	4.1604	1				33791	4230	19727	19728	41203	41203					0.018458022430536403
PQPRRALR	8	Unmodified	_PQPRRALR_					0	0	0			REV__ENST00000368352.9_1_1:155292852-155294901:+|nuORF	REV__ENST00000368352.9_1_1:155292852-155294901:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.2716369628906	2	497.306867	992.599181	0.16119	8.0161E-05	1.8103	0.0009003	1.9715	0.00098046	497.3078422955775	15.021	0.41381	14.911	14.737	15.151	-0.10981					19	14	2	0	0	0	0.34337	1	852	852		5.2307	0	1	60774	+		33792	20336	19728	19729	41204	41204					0.1025851310531607
PQRGRGRPAAL	11	Unmodified	_PQRGRGRPAAL_					0	0	0			REV__ENST00000348579.6_1_16:67428515-67429028:-|nuORF	REV__ENST00000348579.6_1_16:67428515-67429028:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.845947265625	2	589.846887	1177.67922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.85	1	115.85	115.35	116.35	0								0	0	0	0.38114	1	30009	30009		1.3295	0.72803	1		+		33793	16864	19729	19730	41205	41205					0.09748954708516067
PQRLRGLLL	9	Unmodified	_PQRLRGLLL_					0	0	0		ENSG00000164932|ENST00000330295|CTHRC1	ENSG00000164932|ENST00000330295|CTHRC1	ENSG00000164932|ENST00000330295|CTHRC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7760620117188	2	533.3482	1064.68185	0.42426	0.00022628	1.25	0.0006667	1.6743	0.00089298	533.3486032938197	40.818	0.37759	40.818	40.662	41.039	0					16	13	2	0	0	0	0.26145	1	8727	8727		2.0598	0	1	127240			33794	5901	19730	19731	41206	41206					0.15209410113493504
PQRLRGLLL	9	Unmodified	_PQRLRGLLL_					0	0	0		ENSG00000164932|ENST00000330295|CTHRC1	ENSG00000164932|ENST00000330295|CTHRC1	ENSG00000164932|ENST00000330295|CTHRC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	533.3482	1064.68185	0.46657	0.00024884	1.0988	0.00058602	1.5653	0.00083487	533.3489330621018	40.762	0.26094	40.854	40.693	40.954	0.09267	0.018394	-7.356E-05	NaN	0.52476	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97627			33795	5901	19730	19731							0.15209410113493504
PQRNQEWRV	9	Unmodified	_PQRNQEWRV_					0	0	0			REV__nc|ENSG00000067141|Q92859-3|NEO1	REV__nc|ENSG00000067141|Q92859-3|NEO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.1853332519531	3	404.879261	1211.61595	0.34605	0.00014011	-3.2651	-0.001322	-2.9191	-0.0011819	404.8777645059027	36.672	0.33582	36.765	36.536	36.872	0.093018					16	11	2	0	0	0	0.25992	1	7421	7421		4.5289	0.33936	1	104760	+		33796	13685	19731	19732	41207	41207					0.01860969200583895
PQRQLPEVL	9	Unmodified	_PQRQLPEVL_					0	0	0		ENSG00000283288|ENST00000637503|SMIM33	ENSG00000283288|ENST00000637503|SMIM33	ENSG00000283288|ENST00000637503|SMIM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3143310546875	2	540.314023	1078.61349	1.146	0.00061919	-0.38865	-0.00020999	0.75734	0.0004092	540.313647384338	47.062	0.77089	47.116	46.877	47.648	0.054371					65	27	4	0	0	0	0.14076	1	10648	10648		32.305	1.0371	1	1584100			33797	8757	19732	19733	41208	41208					0.0773312074295518
PQRQRWLRR	9	Unmodified	_PQRQRWLRR_					0	0	0			REV__ENST00000356840.7_1_6:16129383-16129569:+|nuORF	REV__ENST00000356840.7_1_6:16129383-16129569:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	648.3805541992188	2	648.381429	1294.7483	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.872	1	83.872	83.372	84.372	0								0	0	0	0.264	1	21960	21960		1.8442	0	1		+		33798	20204	19733	19734	41209	41209					0.11272038728043299
PQRRAAWWQS	10	Unmodified	_PQRRAAWWQS_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.75567626953125	3	429.223139	1284.64759	-0.41322	-0.00017736	-0.17604	-7.556E-05	-0.58926	-0.00025292	429.22308733238674	13.38	0.50176	13.281	13.042	13.544	-0.099291					27	17	2	0	0	0	0.32068	1	350	350		3.5871	2.5156	1	83632			33799	6599	19734	19735	41210	41210					0.016649619545660244
PQRRAAWWQS	10	Unmodified	_PQRRAAWWQS_					0	0	0		ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	ENSG00000172037|ENST00000305544|LAMB2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	429.223139	1284.64759	-0.44079	-0.0001892	-0.31513	-0.00013526	-0.75593	-0.00032446	429.22318259663484	13.408	0.61263	13.341	13.073	13.686	-0.067496	0.029847	-6.4395E-05	NaN	5.7834	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112170			33800	6599	19734	19735							0.016649619545660244
PQRRIDTL	8	Unmodified	_PQRRIDTL_					0	0	0		ENSG00000115085|ENST00000264972|ZAP70;nc|ENSG00000115085|P43403-3|ZAP70	ENSG00000115085|ENST00000264972|ZAP70	ENSG00000115085|ENST00000264972|ZAP70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3006896972656	2	499.790715	997.566878	0.15389	7.6911E-05	0.06419	3.2081E-05	0.21808	0.00010899	499.7907178421046	22.22	0.96717	22.17	21.926	22.894	-0.049377					73	33	4	0	0	0	0.4397	1	3223	3223		9.3474	1.4373	1	212340			33801	2605	19735	19736	41211	41211					0.06799680911649375
PQRRLWIRKE	10	Unmodified	_PQRRLWIRKE_					0	0	0		ENST00000525963.5_1_11:22851094-22856569:+|nuORF	ENST00000525963.5_1_11:22851094-22856569:+|nuORF	ENST00000525963.5_1_11:22851094-22856569:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.7582702636719	3	461.277355	1380.81024	0.1552	7.159E-05	1.5504	0.00071519	1.7056	0.00078678	461.2779330525938	35.724	0.38445	35.806	35.651	36.036	0.082355					38	13	4	0	0	0	0.32082	1	7234	7234		3.3196	2.9114	1	336630			33802	11544	19736	19737	41212	41212					0.13506345356540805
PQRRRPAVRF	10	Unmodified	_PQRRRPAVRF_					0	0	0		ENST00000520277.1_1_8:75896934-75898275:+|nuORF	ENST00000520277.1_1_8:75896934-75898275:+|nuORF	ENST00000520277.1_1_8:75896934-75898275:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8826293945312	2	641.883804	1281.75306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.63	1	100.67	100.17	101.17	0.038994								0	0	0	0.38166	1	26878	26878		1.4819	0	1				33803	11473	19737	19738	41213	41213					0.1234492287080684
PQRRRPAVRF	10	Unmodified	_PQRRRPAVRF_					0	0	0		ENST00000520277.1_1_8:75896934-75898275:+|nuORF	ENST00000520277.1_1_8:75896934-75898275:+|nuORF	ENST00000520277.1_1_8:75896934-75898275:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8820190429688	2	641.883804	1281.75306	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.67	1	101.7	101.2	102.2	0.027206								0	0	0	0.38166	1	27112	27112		1.4819	0.28856	1				33804	11473	19737	19738	41214	41214					0.1234492287080684
PQRRRRVDR	9	Unmodified	_PQRRRRVDR_					0	0	0			REV__ENST00000263253.8_1_22:41488148-41488439:+|nuORF	REV__ENST00000263253.8_1_22:41488148-41488439:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8692626953125	2	619.868686	1237.72282	0.16664	0.00010329	1.4873	0.00092194	1.654	0.0010252	619.8689631731354	92.921	1.0228	92.921	92.557	93.58	0					123	87	2	0	0	0	0.35563	1	24775	24775		0.52476	0.066424	1	134500	+		33805	19616	19738	19739	41215	41215					0.11346564205632603
PQRRRRVDR	9	Unmodified	_PQRRRRVDR_					0	0	0			REV__ENST00000263253.8_1_22:41488148-41488439:+|nuORF	REV__ENST00000263253.8_1_22:41488148-41488439:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8683471679688	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.058	1	96.058	95.558	96.558	0								0	0	0	0.2646	1	25655	25655		1.6526	0	1		+		33806	19616	19738	19739	41216	41216					0.11346564205632603
PQRRRRVDR	9	Unmodified	_PQRRRRVDR_					0	0	0			REV__ENST00000263253.8_1_22:41488148-41488439:+|nuORF	REV__ENST00000263253.8_1_22:41488148-41488439:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8693237304688	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.105	1	90.195	89.695	90.695	0.090668								0	0	0	0.2646	1	23864	23864		1.6526	0	1		+		33807	19616	19738	19739	41217	41217					0.11346564205632603
PQSKYALVKE	10	Unmodified	_PQSKYALVKE_					0	0	0			REV__ENSG00000152484|ENST00000282344|USP12	REV__ENSG00000152484|ENST00000282344|USP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3447875976562	2	581.826963	1161.63937	0.3966	0.00023075	0.18103	0.00010533	0.57763	0.00033608	581.8268182988895	56.925	0.83244	56.925	56.633	57.466	0					76	30	4	0	0	0	0.28174	1	13809	13809		22.658	5.2154	1	1739700	+		33808	16580	19739	19740	41218	41218					0.06501970194563
PQSKYALVKE	10	Unmodified	_PQSKYALVKE_					0	0	0			REV__ENSG00000152484|ENST00000282344|USP12	REV__ENSG00000152484|ENST00000282344|USP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3447875976562	2	581.826963	1161.63937	0.3695	0.00021498	0.24374	0.00014181	0.61324	0.0003568	581.8268514897486	56.814	0.79425	56.892	56.603	57.397	0.078674					75	29	4	0	0	0	0.18128	2	13752	13752;13802		34.932	8.4251	1	1917200	+		33809	16580	19739	19740	41219;41220	41219					0.06501970194563
PQSLCENHDAE	11	Unmodified	_PQSLCENHDAE_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.7560424804688	2	621.756409	1241.49827	0.22282	0.00013854	-0.80206	-0.00049869	-0.57924	-0.00036015	621.755687002371	96.706	0.6072	96.701	96.424	97.031	-0.0055466					113	60	3	0	0	0	0.44443	1	25879	25879		5.4027	2.4075	1	173590	+		33810	18931	19740	19741	41221	41221					-0.11282396240994785
PQTNRAKL	8	Unmodified	_PQTNRAKL_					0	0	0		ENST00000256324.14_1_14:91580590-91624002:+|nuORF	ENST00000256324.14_1_14:91580590-91624002:+|nuORF	ENST00000256324.14_1_14:91580590-91624002:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.2718200683594	2	464.272158	926.529764	-0.32668	-0.00015167	-0.16671	-7.7397E-05	-0.49339	-0.00022906	464.2720840694408	14.202	0.88637	14.202	13.872	14.759	0					86	30	5	0	0	0	0.46092	1	747	747		2.0598	0	1	929800			33811	8927	19741	19742	41222	41222					0.06356009365879345
PQVHALNIL	9	Unmodified	_PQVHALNIL_					0	0	0		nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;ENST00000436947.1_1_2:43711555-43732871:-|nuORF	nc|ENSG00000115970|Q6YHU6-2|THADA	nc|ENSG00000115970|Q6YHU6-2|THADA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7971496582031	2	502.798009	1003.58147	0.35383	0.0001779	-0.22675	-0.00011401	0.12707	6.3892E-05	502.7978189050752	34.176	1.4395	34.176	33.336	34.775	0					95	51	3	0	0	0	0.25314	1	6785	6785		15.847	1.4418	1	352740			33812	2692	19742	19743	41223	41223					0.07981753059789298
PQVKDIIFAI	10	Unmodified	_PQVKDIIFAI_					0	0	0		ENST00000469364.5_1_3:58413763-58415536:-|nuORF;nc|ENSG00000168291|P11177-3|PDHB;nc|ENSG00000168291|P11177-2|PDHB;ENSG00000168291|ENST00000302746|PDHB	ENST00000469364.5_1_3:58413763-58415536:-|nuORF	ENST00000469364.5_1_3:58413763-58415536:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.290283203125	2	572.342249	1142.66995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.95	1	119.98	119.48	120.48	0.027756								0	0	0	0.38201	1	31006	31006		0.45834	0	1				33813	6265	19743	19744	41224	41224					0.10431748579617306
PQVRAAAP	8	Unmodified	_PQVRAAAP_					0	0	0		ENST00000586752.5_1_17:74723041-74729072:+|nuORF;ENST00000588822.1_1_17:74723041-74723314:+|nuORF	ENST00000586752.5_1_17:74723041-74729072:+|nuORF	ENST00000586752.5_1_17:74723041-74729072:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.22784423828125	2	405.235045	808.455536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.021	1	37.021	36.521	37.521	0								0	0	0	0.36336	1	7581	7581		8.5933	3.3626	1				33814	12123	19744	19745	41225	41225					0.04364666274364026
PQYPSSYPN	9	Unmodified	_PQYPSSYPN_					0	0	0		nc|ENSG00000157211|Q5VXM1-1|CDCP2;ENSG00000157211|ENST00000530059|CDCP2	nc|ENSG00000157211|Q5VXM1-1|CDCP2	nc|ENSG00000157211|Q5VXM1-1|CDCP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3165283203125	2	526.737814	1051.46108	0.21846	0.00011507	-0.12305	-6.4815E-05	0.095411	5.0256E-05	526.7380065317586	15.109	0.2454	15.109	15.012	15.257	0					13	8	2	0	0	0	0.25988	1	927	927		3.9444	0.66309	1	31261			33815	5289	19745	19746	41226	41226					-0.06259699724478196
PRAAGEPLPT	10	Unmodified	_PRAAGEPLPT_					0	0	0		nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7955627441406	2	504.777274	1007.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.339	1	37.339	36.839	37.839	0								0	0	0	0.35216	1	7679	7679		13.906	2.2658	1				33816	12703	19746	19747	41227	41227					0.03652572300461543
PRAAKRARLE	10	Unmodified	_PRAAKRARLE_					0	0	0			REV__ENSG00000146109|ENST00000274849|ABT1	REV__ENSG00000146109|ENST00000274849|ABT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3568115234375	2	584.357088	1166.69962	0.4684	0.00027371	-0.7946	-0.00046433	-0.3262	-0.00019061	584.3565081885512	88.042	0.61587	88.042	87.643	88.259	0					41	29	2	0	0	0	0.40992	1	23265	23265		1.6526	0	1	296140	+		33817	16329	19747	19748	41228	41228					0.122941253683166
PRAAKRARLE	10	Unmodified	_PRAAKRARLE_					0	0	0			REV__ENSG00000146109|ENST00000274849|ABT1	REV__ENSG00000146109|ENST00000274849|ABT1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	584.357088	1166.69962	0.4684	0.00027371	-0.7946	-0.00046433	-0.3262	-0.00019061	584.3565081885512	88.042	0.61587	88.042	87.643	88.259	0	0	0	NaN	1.6526	41	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296140	+		33818	16329	19747	19748							0.122941253683166
PRAAPVTVPT	10	Unmodified	_PRAAPVTVPT_					0	0	0		ENSG00000125520|ENST00000266077|SLC2A4RG	ENSG00000125520|ENST00000266077|SLC2A4RG	ENSG00000125520|ENST00000266077|SLC2A4RG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.30560302734375	2	504.795466	1007.57638	0.37219	0.00018788	-4.1924	-0.0021163	-3.8203	-0.0019284	505.2937493777988	37.17	0.87211	37.257	36.868	37.741	0.08741					90	31	4	0	0	0	0.19885	1	7671	7671		32.786	5.902	1	1232600			33819	3214	19748	19749	41229	41229					0.0728944919718515
PRAAPVTVPT	10	Unmodified	_PRAAPVTVPT_					0	0	0		ENSG00000125520|ENST00000266077|SLC2A4RG	ENSG00000125520|ENST00000266077|SLC2A4RG	ENSG00000125520|ENST00000266077|SLC2A4RG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.3056335449219	2	504.795466	1007.57638	0.50177	0.00025329	-4.4251	-0.0022338	-3.9233	-0.0019805	505.2936188930148	37.116	0.88935	37.209	36.846	37.735	0.093018					81	32	4	0	0	0	0.19885	1	7649	7649		32.786	3.7041	1	1272200			33820	3214	19748	19749	41230	41230					0.0728944919718515
PRAAWFLSF	9	Unmodified	_PRAAWFLSF_					0	0	0			REV__ENST00000557740.5_1_12:57623561-57625306:+|nuORF	REV__ENST00000557740.5_1_12:57623561-57625306:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.2675170898438	2	547.792727	1093.5709	0.65228	0.00035731	-0.74488	-0.00040804	-0.092598	-5.0725E-05	547.7924355221654	32.149	0.48649	32.149	31.982	32.469	0					23	17	2	0	0	0	0.21905	1	6093	6093		23.148	11.508	1	126480	+		33821	18182	19749	19750	41231	41231					0.02785770405353105
PRAEVWCPSCL	11	Unmodified	_PRAEVWCPSCL_					0	0	0			REV__ENST00000484875.5_1_20:46386013-46414798:-|nuORF	REV__ENST00000484875.5_1_20:46386013-46414798:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.8670349121094	3	420.866976	1259.5791	0.074789	3.1476E-05	0.36771	0.00015476	0.4425	0.00018623	420.86721105220164	29.48	0.86775	29.493	29.08	29.948	0.012266					62	29	3	0	0	0	0.43149	1	5312	5312		3.5927	1.5087	1	191510	+		33822	20246	19750	19751	41232	41232					-0.04030786731823355
PRAEVWCPSCL	11	Unmodified	_PRAEVWCPSCL_					0	0	0			REV__ENST00000484875.5_1_20:46386013-46414798:-|nuORF	REV__ENST00000484875.5_1_20:46386013-46414798:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	420.866976	1259.5791	0.13728	5.7775E-05	0.26005	0.00010945	0.39732	0.00016722	420.86703146338743	29.584	0.77668	29.584	29.169	29.945	0	0.042966	-0.0003784	NaN	3.5927	45	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169940	+		33823	20246	19750	19751							-0.04030786731823355
PRAEVWCPSCL	11	Unmodified	_PRAEVWCPSCL_					0	0	0			REV__ENST00000484875.5_1_20:46386013-46414798:-|nuORF	REV__ENST00000484875.5_1_20:46386013-46414798:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	420.866976	1259.5791	0.074789	3.1476E-05	0.36771	0.00015476	0.4425	0.00018623	420.86721105220164	29.48	0.86775	29.493	29.08	29.948	0.012266	-0.048031	-0.00024247	NaN	3.5927	62	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191510	+		33824	20246	19750	19751							-0.04030786731823355
PRAEVWCPSCL	11	Unmodified	_PRAEVWCPSCL_					0	0	0			REV__ENST00000484875.5_1_20:46386013-46414798:-|nuORF	REV__ENST00000484875.5_1_20:46386013-46414798:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	420.866976	1259.5791	-0.13952	-5.8718E-05	0.90007	0.00037881	0.76056	0.00032009	420.8676914243427	29.532	0.72597	29.546	29.248	29.974	0.013474	0.0050647	0.0004297	NaN	3.5927	61	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142640	+		33825	20246	19750	19751							-0.04030786731823355
PRAFVNLVT	9	Unmodified	_PRAFVNLVT_					0	0	0		nc|ENSG00000163803|Q6P1J6-4|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1;nc|ENSG00000163803|Q6P1J6-2|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.311767578125	2	508.798009	1015.58147	0.56413	0.00028703	0.87245	0.0004439	1.4366	0.00073093	509.30218858689295	84.29	0.36867	84.29	84.186	84.555	0					20	13	2	0	0	0	0.18803	1	22104	22104		25.399	4.9457	1	188600			33826	5734	19751	19752	41233	41233					0.07429753059807354
PRAFVNLVT	9	Unmodified	_PRAFVNLVT_					0	0	0		nc|ENSG00000163803|Q6P1J6-4|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1;nc|ENSG00000163803|Q6P1J6-2|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.798009	1015.58147	0.4859	0.00024722	-0.20693	-0.00010529	0.27897	0.00014194	508.79670748238266	84.592	0.088585	84.579	84.516	84.604	-0.01284	0.14482	-0.00077012	NaN	25.399	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48271			33827	5734	19751	19752							0.07429753059807354
PRAGLQSL	8	Unmodified	_PRAGLQSL_					0	0	0		ENSG00000213471|ENST00000641754|TTLL13;nc|ENSG00000213471|A6NNM8|TTLL13	ENSG00000213471|ENST00000641754|TTLL13	ENSG00000213471|ENST00000641754|TTLL13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.896240234375	2	421.248152	840.481751	0.11923	5.0225E-05	3.2332	0.001362	3.3525	0.0014122	421.2475899821082	40.599	0.98918	40.599	40.05	41.039	0					85	35	4	0	0	0	0.31088	1	8633	8633		10.824	0	1	434040			33828	8347	19752	19753	41234	41234					0.055129354458472335
PRALGTQMS	9	Unmodified	_PRALGTQMS_					0	0	0		ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.262451171875	2	480.750201	959.48585	-0.0079598	-3.8267E-06	-0.61896	-0.00029756	-0.62692	-0.00030139	480.74960770452714	24.8	1.4584	24.769	24.057	25.515	-0.031408					73	50	2	0	0	0	0.25622	1	3838	3838		7.2892	0.56607	1	108350			33829	1709	19753	19754	41235	41235					0.00448656877256326
PRAQEALA	8	Unmodified	_PRAQEALA_					0	0	0			REV__ENST00000429650.1_1_2:96950241-96951079:-|nuORF	REV__ENST00000429650.1_1_2:96950241-96951079:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2378234863281	2	428.237784	854.461016	-0.21431	-9.1778E-05	0.57668	0.00024696	0.36236	0.00015518	428.2379508087411	22.182	1.0679	22.133	21.717	22.785	-0.049377					62	37	2	0	0	0	0.30157	1	3059	3059		30.637	3.0077	1	615070	+		33830	20935	19754	19755	41236	41236					0.02796345066167305
PRAQPLLR	8	Unmodified	_PRAQPLLR_					0	0	0		ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A;nc|ENSG00000006118|Q24JP5-3|TMEM132A	ENSG00000006118|ENST00000453848|TMEM132A	ENSG00000006118|ENST00000453848|TMEM132A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.2823486328125	2	475.798343	949.582134	0.23435	0.0001115	-0.84772	-0.00040335	-0.61337	-0.00029184	475.79828740481145	27.06	0.81337	27.048	26.625	27.438	-0.01156					57	28	4	0	0	0	0.34408	1	4607	4607		2.3027	0	1	197250			33831	354	19755	19756	41237	41237					0.10532592499509974
PRAQRPLL	8	Unmodified	_PRAQRPLL_					0	0	0		ENST00000435576.2_1_1:48241052-48459876:-|nuORF	ENST00000435576.2_1_1:48241052-48459876:-|nuORF	ENST00000435576.2_1_1:48241052-48459876:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.798095703125	2	475.798343	949.582134	-0.0016108	-7.6643E-07	-0.07785	-3.7041E-05	-0.079461	-3.7807E-05	475.7982003658141	26.19	0.62829	26.19	25.9	26.528	0					50	21	3	0	0	0	0.45169	1	4337	4337		5.2307	0.47466	1	306940			33832	10510	19756	19757	41238	41238					0.10532592499521343
PRARRARRQ	9	Unmodified	_PRARRARRQ_					0	0	0		ENST00000378700.7_2_6:19837725-19837965:+|nuORF	ENST00000378700.7_2_6:19837725-19837965:+|nuORF	ENST00000378700.7_2_6:19837725-19837965:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.8590698242188	2	583.858121	1165.70169	0.34029	0.00019868	0.70911	0.00041402	1.0494	0.0006127	583.8589150555797	88.376	1.2163	88.465	87.95	89.166	0.089195					180	55	5	0	0	0	0.33018	1	23416	23416		4.3292	0.73274	1	1672300			33833	9961	19757	19758	41239	41239					0.1254659889677896
PRATKPSALS	10	Unmodified	_PRATKPSALS_					0	0	0		nc|ENSG00000180176|P07101-6|TH;nc|ENSG00000180176|P07101-5|TH;TH|p.Q504Rfs*21|1|0.22|ENSG00000180176|chr11:2164310-2164310|G/-|frameshift_variant;ENSG00000180176|ENST00000352909|TH;nc|ENSG00000180176|P07101-4|TH;nc|ENSG00000180176|P07101-2|TH;nc|ENSG00000180176|P07101|TH	nc|ENSG00000180176|P07101-6|TH	nc|ENSG00000180176|P07101-6|TH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2987060546875	2	514.298373	1026.58219	0.26614	0.00013687	0.089043	4.5795E-05	0.35518	0.00018267	514.2984013339318	25.043	0.56795	25.043	24.817	25.384	0					32	19	2	0	0	0	0.40262	1	3941	3941		2.9952	0.69251	1	111300			33834	7168	19758	19759	41240	41240					0.06996547708831713
PRAVSCRLSL	10	Unmodified	_PRAVSCRLSL_					0	0	0		ENSG00000198535|ENST00000355522|C2CD4A	ENSG00000198535|ENST00000355522|C2CD4A	ENSG00000198535|ENST00000355522|C2CD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.3133544921875	2	551.3135	1100.61245	0.086142	4.7491E-05	0.30103	0.00016596	0.38717	0.00021345	551.3135426601455	28.307	0.9084	28.307	27.732	28.64	0					52	31	2	0	0	0	0.39427	1	4965	4965		4.5289	0	1	218850			33835	8087	19759	19760	41241	41241					0.06616583102413642
PRAVSCRLSL	10	Unmodified	_PRAVSCRLSL_					0	0	0		ENSG00000198535|ENST00000355522|C2CD4A	ENSG00000198535|ENST00000355522|C2CD4A	ENSG00000198535|ENST00000355522|C2CD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.3140869140625	2	551.3135	1100.61245	0.19327	0.00010656	0.42009	0.0002316	0.61337	0.00033816	551.3136422633999	28.338	0.95259	28.334	27.737	28.689	-0.0042572					62	33	3	0	0	0	0.38027	1	4892	4892		7.1017	2.2047	1	307680			33836	8087	19759	19760	41242	41242					0.06616583102413642
PRAVWQFRKMI	11	Unmodified	_PRAVWQFRKMI_					0	0	0		ENSG00000170890|ENST00000308366|PLA2G1B	ENSG00000170890|ENST00000308366|PLA2G1B	ENSG00000170890|ENST00000308366|PLA2G1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.93994140625	3	477.939575	1430.79689	0.35855	0.00017137	0.51545	0.00024635	0.874	0.00041772	477.93979915995	21.145	0.70925	21.092	20.835	21.544	-0.052912					78	24	4	0	0	0	0.46704	1	2795	2795		2.4348	0	1	427160			33837	6490	19760	19761	41243	41243					0.09872771252935308
PRCARAGMRW	10	Unmodified	_PRCARAGMRW_					0	0	0		ENST00000453348.1_1_7:1778316-1778475:-|nuORF	ENST00000453348.1_1_7:1778316-1778475:-|nuORF	ENST00000453348.1_1_7:1778316-1778475:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.3037109375	2	602.302944	1202.59133	0.35877	0.00021609	0.99672	0.00060033	1.3555	0.00081642	602.3033264100836	23.413	0.74649	23.325	22.967	23.713	-0.087608					58	26	3	0	0	0	0.40106	1	3471	3471		3.2813	0	1	245790			33838	10669	19761	19762	41244	41244					-0.0018570547811123106
PRCGVPFTD	9	Unmodified	_PRCGVPFTD_					0	0	0			REV__ENSG00000100253|ENST00000216075|MIOX	REV__ENSG00000100253|ENST00000216075|MIOX	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.25115966796875	2	496.236927	990.459301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.94	1	22.853	22.353	23.353	-0.087608								0	0	0	0.24066	1	3300	3300		9.3831	1.473	1		+		33839	14174	19762	19763	41245	41245					-0.03631032014084212
PRCHHFPL	8	Unmodified	_PRCHHFPL_					0	0	0			REV__ENST00000447563.5_1_7:158809599-158810334:+|nuORF	REV__ENST00000447563.5_1_7:158809599-158810334:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.3482360839844	2	503.755621	1005.49669	0.38852	0.00019572	-2.2048	-0.0011107	-1.8163	-0.00091498	504.2560475892213	30.441	0.44733	30.469	30.274	30.721	0.027946					20	15	2	0	0	0	0.34218	1	5604	5604		5.2307	1.9494	1	105080	+		33840	21091	19763	19764	41246	41246					-0.005838959577999958
PRCLSELQLCC	11	Unmodified	_PRCLSELQLCC_					0	0	0			REV__ENST00000484207.5_1_14:96131359-96134831:+|nuORF	REV__ENST00000484207.5_1_14:96131359-96134831:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7275085449219	3	422.199738	1263.57738	-0.068946	-2.9109E-05	0.69664	0.00029412	0.62769	0.00026501	422.19979647859105	17.134	0.88397	17.134	16.952	17.835	0					78	30	4	0	0	0	0.33303	1	1712	1712		2.4348	0.69251	1	128770	+		33841	21529	19764	19765	41247	41247					-0.04386163812068844
PRCPLLML	8	Unmodified	_PRCPLLML_					0	0	0			REV__ENST00000487429.1_1_6:43025779-43026944:-|nuORF	REV__ENST00000487429.1_1_6:43025779-43026944:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7500915527344	2	471.766809	941.519064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.801	1	67.879	67.379	68.379	0.078041								0	0	0	0.34752	1	17036	17036		15.768	0	1		+		33842	14781	19765	19766	41248	41248					0.04596567395594775
PRDIKKLS	8	Unmodified	_PRDIKKLS_					0	0	0			REV__nc|ENSG00000277149|Q6NUM6-2|TYW1B	REV__nc|ENSG00000277149|Q6NUM6-2|TYW1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2350769042969	2	478.798009	955.581465	0.35692	0.00017089	-0.65461	-0.00031343	-0.29769	-0.00014253	478.7978076530562	32.132	0.57671	32.132	31.953	32.529	0					30	20	2	0	0	0	0.34272	1	6153	6153		7.9102	0	1	232010	+		33843	18880	19766	19767	41249	41249					0.10189753059785289
PRDNPRNTRF	10	Unmodified	_PRDNPRNTRF_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.8311157226562	2	636.831434	1271.64832	0.23096	0.00014708	0.12491	7.955E-05	0.35588	0.00022663	636.8314828573641	14.308	0.46271	14.203	13.991	14.454	-0.10466					42	15	4	0	0	0	0.39227	1	740	740		4.897	2.3985	1	257020			33844	5690	19767	19768	41250	41250					0.023357566035883792
PRDPRGKPLAA	11	Unmodified	_PRDPRGKPLAA_					0	0	0			REV__ENST00000404977.6_1_1:204937408-204955114:+|nuORF	REV__ENST00000404977.6_1_1:204937408-204955114:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3428344726562	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.351	1	98.344	97.844	98.844	-0.0068283								0	0	0	0.37382	1	26348	26348		2.9952	0	1		+		33845	17066	19768	19769	41251	41251					0.09147016757151505
PRDRRRRYLGS	11	Unmodified	_PRDRRRRYLGS_					0	0	0			REV__nc|ENSG00000169756|P48059-5|LIMS1	REV__nc|ENSG00000169756|P48059-5|LIMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.94012451171875	3	477.939514	1430.79671	0.27828	0.000133	0.65187	0.00031156	0.93016	0.00044456	477.93985503978723	21.061	0.74622	21.061	20.798	21.545	0					83	25	4	0	0	0	0.44351	2	2717	2717;2770		5.5233	3.0885	1	404620	+		33846	23080	19769	19770	41252;41253	41252					0.09854487577331383
PRDRRRRYLGS	11	Unmodified	_PRDRRRRYLGS_					0	0	0			REV__nc|ENSG00000169756|P48059-5|LIMS1	REV__nc|ENSG00000169756|P48059-5|LIMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.940185546875	3	477.939514	1430.79671	0.45485	0.00021739	0.50484	0.00024128	0.95969	0.00045867	477.93978281275537	21.231	0.75398	21.121	20.894	21.648	-0.11003					63	26	3	0	0	0	0.46002	1	2772	2772		3.3557	1.2718	1	458000	+		33847	23080	19769	19770	41254	41254					0.09854487577331383
PRDRRRRYLGS	11	Unmodified	_PRDRRRRYLGS_					0	0	0			REV__nc|ENSG00000169756|P48059-5|LIMS1	REV__nc|ENSG00000169756|P48059-5|LIMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.9400634765625	3	477.939514	1430.79671	0.35855	0.00017137	0.64303	0.00030733	1.0016	0.00047869	477.93979915995	21.145	0.70925	21.092	20.835	21.544	-0.052912					78	24	4	0	0	0	0.44351	1	2743	2743		5.5233	1.6774	1	427160	+		33848	23080	19769	19770	41255	41255					0.09854487577331383
PRDRRRRYLGS	11	Unmodified	_PRDRRRRYLGS_					0	0	0			REV__nc|ENSG00000169756|P48059-5|LIMS1	REV__nc|ENSG00000169756|P48059-5|LIMS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	477.939514	1430.79671	0.45485	0.00021739	0.50484	0.00024128	0.95969	0.00045867	477.93978281275537	21.231	0.75398	21.121	20.894	21.648	-0.11003	0.029699	-0.00014079	NaN	5.5233	63	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	458000	+		33849	23080	19769	19770							0.09854487577331383
PRDRRRRYLGS	11	Unmodified	_PRDRRRRYLGS_					0	0	0			REV__nc|ENSG00000169756|P48059-5|LIMS1	REV__nc|ENSG00000169756|P48059-5|LIMS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	477.939514	1430.79671	0.35855	0.00017137	0.64303	0.00030733	1.0016	0.00047869	477.93979915995	21.145	0.70925	21.092	20.835	21.544	-0.052912	0.00071705	5.7345E-05	NaN	5.5233	78	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427160	+		33850	23080	19769	19770							0.09854487577331383
PRDRTPAPG	9	Unmodified	_PRDRTPAPG_					0	0	0		nc|ENSG00000251359|Q96NR7|WWC2-AS2;ENST00000578387.1_1_4:184019140-184020019:-|nuORF	nc|ENSG00000251359|Q96NR7|WWC2-AS2	nc|ENSG00000251359|Q96NR7|WWC2-AS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7593994140625	2	483.759415	965.504277	-0.11801	-5.7089E-05	0.063113	3.0531E-05	-0.054899	-2.6558E-05	483.7593479644652	13.441	0.52957	13.342	13.16	13.69	-0.099291					27	18	2	0	0	0	0.31417	1	429	429		6.7232	2.7788	1	152920			33851	12060	19770	19771	41256	41256					0.020145348434766674
PRDRTPAPG	9	Unmodified	_PRDRTPAPG_					0	0	0		nc|ENSG00000251359|Q96NR7|WWC2-AS2;ENST00000578387.1_1_4:184019140-184020019:-|nuORF	nc|ENSG00000251359|Q96NR7|WWC2-AS2	nc|ENSG00000251359|Q96NR7|WWC2-AS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7593688964844	2	483.759415	965.504277	-0.10708	-5.18E-05	-0.084326	-4.0794E-05	-0.1914	-9.2593E-05	483.7593448641099	13.445	0.38497	13.377	13.215	13.6	-0.067496					24	13	2	0	0	0	0.26612	1	425	425		13.906	6.6168	1	145260			33852	12060	19770	19771	41257	41257					0.020145348434766674
PRDTRPLS	8	Unmodified	_PRDTRPLS_					0	0	0		nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2	nc|ENSG00000149527|O75038-3|PLCH2	nc|ENSG00000149527|O75038-3|PLCH2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2473449707031	2	471.261791	940.509028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.989	1	25.989	25.489	26.489	0								0	0	0	0.37183	1	4217	4217		4.756	0	1				33853	4872	19771	19772	41258	41258					0.03639418986222154
PREAAGGR	8	Unmodified	_PREAAGGR_					0	0	0			REV__ENST00000441896.1_1_7:57059615-57063740:+|nuORF	REV__ENST00000441896.1_1_7:57059615-57063740:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.20361328125	2	407.219926	812.425299	-0.14161	-5.7668E-05	-3.0141	-0.0012274	-3.1557	-0.0012851	407.2192405155662	17.731	0.36004	17.731	17.507	17.867	0					15	11	2	0	0	0	0.34272	1	1705	1705		7.9102	0	1	45184	+		33854	21054	19772	19773	41259	41259					0.011583076091937983
PREASPLVV	9	Unmodified	_PREASPLVV_					0	0	0		nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-2|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-3|CALCOCO1;ENSG00000012822|ENST00000550804|CALCOCO1	nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1	nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7591247558594	2	484.282192	966.549831	-0.11267	-5.4565E-05	0.93847	0.00045448	0.8258	0.00039992	484.28192470717283	13.323	0.17357	13.323	13.254	13.427	0					6	5	2	0	0	0	0.26145	1	403	403		2.0598	0	1	9382.4			33855	456	19773	19774	41260	41260					0.06521760305861335
PREDPPRPT	9	Unmodified	_PREDPPRPT_					0	0	0		ENST00000456950.6_1_17:40821512-40828020:-|nuORF;nc|ENSG00000068137|Q7Z736-3|PLEKHH3;nc|ENSG00000068137|Q7Z736-2|PLEKHH3;ENST00000591490.5_1_17:40821740-40828722:-|nuORF;ENSG00000068137|ENST00000591022|PLEKHH3	ENST00000456950.6_1_17:40821512-40828020:-|nuORF	ENST00000456950.6_1_17:40821512-40828020:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.8198852539062	2	532.777805	1063.54106	0.11338	6.0405E-05	3.0762	0.001639	3.1896	0.0016994	532.7796301357474	25.373	0.17617	25.317	25.219	25.395	-0.055931					8	5	2	0	0	0	0.25779	1	4048	4048		6.2058	0.97511	1	26107			33856	878	19774	19775	41261	41261					0.011827866693693068
PREERKKFPLS	11	Unmodified	_PREERKKFPLS_					0	0	0		ENSG00000153157|ENST00000283141|SYCP2L;ENST00000480294.1_1_6:10891760-10930631:+|nuORF;nc|ENSG00000153157|Q5T4T6-2|SYCP2L	ENSG00000153157|ENST00000283141|SYCP2L	ENSG00000153157|ENST00000283141|SYCP2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.28753662109375	3	462.933254	1385.77793	-0.14696	-6.8033E-05	0.3689	0.00017078	0.22194	0.00010274	462.9335170437739	41.369	0.34561	41.369	41.125	41.471	0					25	12	3	0	0	0	0.33146	1	8930	8930		4.1166	1.8639	1	392170			33857	5062	19775	19776	41262	41262					0.10047513162908217
PREGNPLRI	9	Unmodified	_PREGNPLRI_					0	0	0			REV__nc|ENSG00000030419|Q9UKS7-4|IKZF2	REV__nc|ENSG00000030419|Q9UKS7-4|IKZF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3052978515625	2	526.30399	1050.59343	0.44492	0.00023416	0.58125	0.00030591	1.0262	0.00054008	526.3043046840173	24.214	0.42439	24.142	23.935	24.359	-0.072559					28	13	3	0	0	0	0.27726	1	3691	3691		12.241	1.4411	1	96082	+		33858	22879	19776	19777	41263	41263					0.07015369802979876
PREGYALVE	9	Unmodified	_PREGYALVE_					0	0	0			REV__ENSG00000070886|ENST00000166244|EPHA8	REV__ENSG00000070886|ENST00000166244|EPHA8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.256591796875	2	517.269281	1032.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.73	1	46.782	46.282	47.282	0.052574								0	0	0	0.23367	1	10553	10553		11.64	1.5664	1		+		33859	13739	19777	19778	41264	41264					0.00904866063569898
PREKLLNK	8	Unmodified	_PREKLLNK_					0	0	0			REV__ENST00000372847.1_1_9:131140285-131150177:+|nuORF	REV__ENST00000372847.1_1_9:131140285-131150177:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.77081298828125	2	499.311284	996.608014	0.29668	0.00014814	-0.45071	-0.00022505	-0.15403	-7.6909E-05	499.310991787783	26.83	0.47745	26.83	26.586	27.063	0					33	16	3	0	0	0	0.31768	1	4486	4486		27.629	2.2295	1	132400	+		33860	17365	19778	19779	41265	41265					0.1095744195114321
PREKLLNK	8	Unmodified	_PREKLLNK_					0	0	0			REV__ENST00000372847.1_1_9:131140285-131150177:+|nuORF	REV__ENST00000372847.1_1_9:131140285-131150177:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	499.311284	996.608014	0.32357	0.00016156	-0.53287	-0.00026607	-0.2093	-0.00010451	499.31087491967696	26.837	0.53305	26.815	26.536	27.069	-0.021412	-0.008842	-6.0667E-05	NaN	34.402	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131480	+		33861	17365	19778	19779							0.1095744195114321
PRERPVQLG	9	Unmodified	_PRERPVQLG_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3043823242188	2	526.30399	1050.59343	0.40433	0.0002128	0.10395	5.4708E-05	0.50828	0.00026751	526.3040902609775	24.078	0.45501	24.078	23.857	24.312	0					33	15	3	0	0	0	0.31417	1	3646	3646		6.7232	0	1	92966			33862	7926	19779	19780	41266	41266					0.07015369802979876
PRERPVQLG	9	Unmodified	_PRERPVQLG_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7788696289062	2	526.30399	1050.59343	0.44492	0.00023416	0.58125	0.00030591	1.0262	0.00054008	526.3043046840173	24.214	0.42439	24.142	23.935	24.359	-0.072559					28	13	3	0	0	0	0.25706	1	3712	3712		6.7232	0	1	96082			33863	7926	19779	19780	41267	41267					0.07015369802979876
PRERPVQLG	9	Unmodified	_PRERPVQLG_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.779052734375	2	526.30399	1050.59343	0.47095	0.00024786	0.48819	0.00025694	0.95914	0.0005048	526.3044975130044	24.237	0.40066	24.199	23.965	24.366	-0.038927					20	13	2	0	0	0	0.25706	1	3704	3704		6.7232	0	1	78780			33864	7926	19779	19780	41268	41268					0.07015369802979876
PRERPVQLG	9	Unmodified	_PRERPVQLG_					0	0	0		ENSG00000197077|ENST00000358431|KIAA1671;ENST00000494730.2_1_22:25436553-25570783:+|nuORF	ENSG00000197077|ENST00000358431|KIAA1671	ENSG00000197077|ENST00000358431|KIAA1671	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	526.30399	1050.59343	0.40433	0.0002128	0.10395	5.4708E-05	0.50828	0.00026751	526.3040902609775	24.078	0.45501	24.078	23.857	24.312	0	-0.061237	-0.00033376	NaN	6.7232	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92966			33865	7926	19779	19780							0.07015369802979876
PREWDPLHPSS	11	Unmodified	_PREWDPLHPSS_					0	0	0		nc|ENSG00000123485|Q8NCD3-3|HJURP;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.88238525390625	3	440.882559	1319.62585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.994	1	13.994	13.494	14.494	0								0	0	0	0.38134	1	591	591		1.1098	0	1				33866	3108	19780	19781	41269	41269					-0.021178875846771916
PREWQTTGTP	10	Unmodified	_PREWQTTGTP_					0	0	0			REV__ENST00000509475.5_1_4:40892379-41016395:-|nuORF	REV__ENST00000509475.5_1_4:40892379-41016395:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.3021240234375	2	586.78837	1171.56219	0.030579	1.7944E-05	-0.0007799	-4.5764E-07	0.029799	1.7486E-05	586.788452854111	14.118	0.40278	14.118	13.962	14.365	0					22	13	3	0	0	0	0.32139	1	699	699		1.3295	0.13619	1	146150	+		33867	17083	19781	19782	41270	41270					-0.0167324802175699
PRFCALPPRPV	11	Unmodified	_PRFCALPPRPV_					0	0	0		ENST00000415993.5_1_22:50689477-50689669:-|nuORF;ENST00000497483.1_1_22:50689302-50689819:-|nuORF	ENST00000415993.5_1_22:50689477-50689669:-|nuORF	ENST00000415993.5_1_22:50689477-50689669:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.9215087890625	3	418.237621	1251.69103	-0.017596	-7.3591E-06	3.7146	0.0015536	3.697	0.0015462	418.23955723586505	39.122	0.63511	39.215	39.027	39.662	0.09267					32	22	2	0	0	0	0.3325	1	8342	8342		4.1166	0.27072	1	201420			33868	10315	19782	19783	41271	41271					0.07525435407455916
PRFRQTRW	8	Unmodified	_PRFRQTRW_					0	0	0		ENST00000570457.6_1_17:7239900-7240612:+|nuORF	ENST00000570457.6_1_17:7239900-7240612:+|nuORF	ENST00000570457.6_1_17:7239900-7240612:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.2898559570312	2	573.817599	1145.62064	-0.12692	-7.2826E-05	1.5772	0.00090505	1.4503	0.00083223	573.8187262032271	12.146	0.14955	12.146	12.07	12.219	0					15	7	3	0	0	0	0.46022	1	22	22		2.3027	0.4585	1	41416			33869	12023	19783	19784	41272	41272					0.05365898134027702
PRGAAGGALCL	11	Unmodified	_PRGAAGGALCL_					0	0	0		ENSG00000261949|ENST00000610896|GFY	ENSG00000261949|ENST00000610896|GFY	ENSG00000261949|ENST00000610896|GFY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.28778076171875	2	493.266019	984.517485	0.25722	0.00012688	-0.9817	-0.00048424	-0.72448	-0.00035736	493.26579992185725	22.993	0.43682	22.948	22.76	23.197	-0.044867					21	15	2	0	0	0	0.33119	1	3296	3296		5.7319	0.97584	1	36537			33870	8665	19784	19785	41273	41273					0.0246064963120034
PRGCGRGHGAK	11	Unmodified	_PRGCGRGHGAK_					0	0	0			REV__ENST00000576083.5_1_17:5973812-5983707:+|nuORF	REV__ENST00000576083.5_1_17:5973812-5983707:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.284423828125	2	548.283066	1094.55158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.992	1	25.992	25.492	26.492	0								0	0	0	0.36335	1	4218	4218		5.2969	0.066215	1		+		33871	22449	19785	19786	41274	41274					0.008084908428145354
PRGDKEEL	8	Unmodified	_PRGDKEEL_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.24578857421875	2	472.245806	942.47706	-0.029547	-1.3954E-05	0.20853	9.8479E-05	0.17899	8.4525E-05	472.2459437634289	15.236	0.83139	15.126	14.955	15.786	-0.10981					39	28	2	0	0	0	0.33988	1	985	985		18.146	0	1	105600			33872	400	19786	19787	41275	41275					0.003520065124348548
PRGDKEEL	8	Unmodified	_PRGDKEEL_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2455749511719	2	472.245806	942.47706	-0.054274	-2.5631E-05	0.12683	5.9897E-05	0.072561	3.4267E-05	472.24588511698767	15.229	0.65856	15.164	15.041	15.7	-0.064413					30	21	2	0	0	0	0.41087	1	998	998		18.146	0	1	141060			33873	400	19786	19787	41276	41276					0.003520065124348548
PRGDKEEL	8	Unmodified	_PRGDKEEL_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-7|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	472.245806	942.47706	-0.19027	-8.9853E-05	0.48244	0.00022783	0.29217	0.00013798	472.246127422012	15.118	0.72984	15.118	14.949	15.679	0	-0.018351	0.00023979	NaN	18.146	37	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115720			33874	400	19786	19787							0.003520065124348548
PRGEEKQHGSS	11	Unmodified	_PRGEEKQHGSS_					0	0	0			REV__PHF21B|p.S217Wfs*115|1|0.31|ENSG00000056487|chr22:44913977-44914005|GGAGGGGTGAAGGGGACAGTGATGGGGAG/-|frameshift_variant	REV__PHF21B|p.S217Wfs*115|1|0.31|ENSG00000056487|chr22:44913977-44914005|GGAGGGGTGAAGGGGACAGTGATGGGGAG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.1882019042969	3	404.530297	1210.56906	-0.2336	-9.4497E-05	4.2979	0.0017386	4.0643	0.0016441	404.86628636136413	23.831	0.21783	23.831	23.669	23.887	0					11	6	2	0	0	0	0.33037	1	3539	3539		3.8459	0	1	19726	+		33875	23285	19787	19788	41277	41277					-0.027799351411886164
PRGEQRLLFA	10	Unmodified	_PRGEQRLLFA_					0	0	0			REV__ENSG00000164291|ENST00000380009|ARSK	REV__ENSG00000164291|ENST00000380009|ARSK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8387451171875	2	593.838197	1185.66184	0.28889	0.00017155	-0.046124	-2.739E-05	0.24277	0.00014416	593.8381898671813	25.736	0.40093	25.736	25.445	25.846	0					19	13	2	0	0	0	0.34795	1	4153	4153		13.042	0.80181	1	166680	+		33876	17145	19788	19789	41278	41278					0.07643614382845954
PRGEQRLLFA	10	Unmodified	_PRGEQRLLFA_					0	0	0			REV__ENSG00000164291|ENST00000380009|ARSK	REV__ENSG00000164291|ENST00000380009|ARSK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8380126953125	2	593.838197	1185.66184	0.17282	0.00010263	0.289	0.00017162	0.46182	0.00027425	593.8383448876614	25.74	0.37288	25.701	25.47	25.843	-0.038671					25	12	3	0	0	0	0.3258	1	4163	4163		17.113	2.7075	1	177830	+		33877	17145	19788	19789	41279	41279					0.07643614382845954
PRGEQRLLFA	10	Unmodified	_PRGEQRLLFA_					0	0	0			REV__ENSG00000164291|ENST00000380009|ARSK	REV__ENSG00000164291|ENST00000380009|ARSK	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	593.838197	1185.66184	0.28889	0.00017155	-0.046124	-2.739E-05	0.24277	0.00014416	593.8381898671813	25.736	0.40093	25.736	25.445	25.846	0	-0.0004788	-0.0002038	NaN	17.113	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166680	+		33878	17145	19788	19789							0.07643614382845954
PRGEQRLLFA	10	Unmodified	_PRGEQRLLFA_					0	0	0			REV__ENSG00000164291|ENST00000380009|ARSK	REV__ENSG00000164291|ENST00000380009|ARSK	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	593.838197	1185.66184	0.17282	0.00010263	0.289	0.00017162	0.46182	0.00027425	593.8383448876614	25.74	0.37288	25.701	25.47	25.843	-0.038671	-0.035418	0.00019422	NaN	17.113	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177830	+		33879	17145	19788	19789							0.07643614382845954
PRGEQRLLFA	10	Unmodified	_PRGEQRLLFA_					0	0	0			REV__ENSG00000164291|ENST00000380009|ARSK	REV__ENSG00000164291|ENST00000380009|ARSK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	593.838197	1185.66184	0.19495	0.00011577	0.075923	4.5086E-05	0.27088	0.00016086	593.8382572062098	25.795	0.43865	25.773	25.552	25.991	-0.022238	0.035897	-5.8848E-05	NaN	17.113	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155410	+		33880	17145	19788	19789							0.07643614382845954
PRGGLLLPATG	11	Unmodified	_PRGGLLLPATG_					0	0	0		ENST00000600059.5_1_19:48988799-49002658:-|nuORF	ENST00000600059.5_1_19:48988799-49002658:-|nuORF	ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.2874145507812	2	526.316566	1050.61858	0.66123	0.00034801	0.78386	0.00041256	1.4451	0.00076057	526.316763321057	44.944	0.35056	45.019	44.859	45.209	0.075047					18	12	2	0	0	0	0.32477	1	9968	9968		16.149	6.0752	1	131970			33881	12247	19789	19790	41280	41280					0.09529424605557324
PRGGPNLAIT	10	Unmodified	_PRGGPNLAIT_					0	0	0			REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7835998535156	2	498.285266	994.555979	0.71294	0.00035525	-4.2667	-0.002126	-3.5538	-0.0017708	498.28310707920264	36.692	0.58834	36.785	36.687	37.275	0.093018					29	21	2	0	0	0	0.31039	1	7493	7493		18.146	0	1	522800	+		33882	13867	19790	19791	41281	41281					0.058482785373598745
PRGKKSLP	8	Unmodified	_PRGKKSLP_					0	0	0		ENST00000520791.5_1_8:99956895-99957015:+|nuORF	ENST00000520791.5_1_8:99956895-99957015:+|nuORF	ENST00000520791.5_1_8:99956895-99957015:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2456970214844	2	441.779619	881.544686	0.14429	6.3744E-05	-0.52486	-0.00023187	-0.38057	-0.00016813	441.77936415504786	24.676	0.47913	24.676	24.423	24.902	0					32	15	3	0	0	0	0.344	1	3822	3822		2.5775	0.27475	1	52891			33883	11479	19791	19792	41282	41282					0.09917501233894654
PRGLSVAI	8	Unmodified	_PRGLSVAI_					0	0	0			REV__nc|ENSG00000165240|Q04656-3|ATP7A	REV__nc|ENSG00000165240|Q04656-3|ATP7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.7532043457031	2	406.75307	811.491587	0.018798	7.6462E-06	0.66957	0.00027235	0.68837	0.00027999	406.75331163711337	37.503	0.78952	37.59	37.218	38.007	0.08741					65	28	4	0	0	0	0.28696	1	7761	7761		32.305	3.8186	1	629300	+		33884	23071	19792	19793	41283	41283					0.07830123451230975
PRGNLIFPL	9	Unmodified	_PRGNLIFPL_					0	0	0		ENST00000512381.1_1_6:41978643-41978709:-|nuORF	ENST00000512381.1_1_6:41978643-41978709:-|nuORF	ENST00000512381.1_1_6:41978643-41978709:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.8082275390625	2	513.808377	1025.6022	0.17409	8.9447E-05	-0.34902	-0.00017933	-0.17493	-8.988E-05	513.8081962093574	60.331	0.81521	60.331	60.035	60.851	0					87	29	5	0	0	0	0.21303	1	14815	14815		21.747	0	1	4165700			33885	11395	19793	19794	41284	41284					0.0904234343945518
PRGNLIFPL	9	Unmodified	_PRGNLIFPL_					0	0	0		ENST00000512381.1_1_6:41978643-41978709:-|nuORF	ENST00000512381.1_1_6:41978643-41978709:-|nuORF	ENST00000512381.1_1_6:41978643-41978709:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.80859375	2	513.808377	1025.6022	-0.1415	-7.2703E-05	0.084296	4.3312E-05	-0.057203	-2.9392E-05	513.8083501478393	60.251	0.84732	60.346	60.047	60.894	0.095093					78	30	3	0	0	0	0.25314	1	14792	14792		15.847	0	1	3783000			33886	11395	19793	19794	41285	41285					0.0904234343945518
PRGNLIFPL	9	Unmodified	_PRGNLIFPL_					0	0	0		ENST00000512381.1_1_6:41978643-41978709:-|nuORF	ENST00000512381.1_1_6:41978643-41978709:-|nuORF	ENST00000512381.1_1_6:41978643-41978709:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8082275390625	2	513.808377	1025.6022	0.17202	8.8383E-05	-0.21325	-0.00010957	-0.041229	-2.1184E-05	513.8082206178693	60.338	0.86328	60.327	59.997	60.86	-0.011486					86	31	4	0	0	0	0.088391	2	14704	14704;14820		39.957	0	1	4096200			33887	11395	19793	19794	41286;41287	41286					0.0904234343945518
PRGNLIFPL	9	Unmodified	_PRGNLIFPL_					0	0	0		ENST00000512381.1_1_6:41978643-41978709:-|nuORF	ENST00000512381.1_1_6:41978643-41978709:-|nuORF	ENST00000512381.1_1_6:41978643-41978709:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.808377	1025.6022	0.17409	8.9447E-05	-0.34902	-0.00017933	-0.17493	-8.988E-05	513.8081962093574	60.331	0.81521	60.331	60.035	60.851	0	-0.0034917	-0.00018645	NaN	39.957	87	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4165700			33888	11395	19793	19794							0.0904234343945518
PRGNLIFPL	9	Unmodified	_PRGNLIFPL_					0	0	0		ENST00000512381.1_1_6:41978643-41978709:-|nuORF	ENST00000512381.1_1_6:41978643-41978709:-|nuORF	ENST00000512381.1_1_6:41978643-41978709:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	513.808377	1025.6022	-0.1415	-7.2703E-05	0.084296	4.3312E-05	-0.057203	-2.9392E-05	513.8083501478393	60.251	0.84732	60.346	60.047	60.894	0.095093	0.011506	0.00025883	NaN	39.957	78	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3783000			33889	11395	19793	19794							0.0904234343945518
PRGPGQRRC	9	Unmodified	_PRGPGQRRC_					0	0	0		ENST00000320230.9_1_11:795129-796080:-|nuORF	ENST00000320230.9_1_11:795129-796080:-|nuORF	ENST00000320230.9_1_11:795129-796080:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7882690429688	2	513.772334	1025.53011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.026	1	19.91	19.41	20.41	-0.11592								0	0	0	0.2575	1	2414	2414		3.9444	0.3479	1				33890	9375	19794	19795	41288	41288					0.018371058140928653
PRGRRPPRWRQ	11	Unmodified	_PRGRRPPRWRQ_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2755126953125	3	487.951865	1460.83377	0.25365	0.00012377	0.31598	0.00015418	0.56962	0.00027795	487.95228851035415	16.46	0.60752	16.397	16.066	16.674	-0.062534					38	20	3	0	0	0	0.47633	1	1269	1269		1.2148	0.80657	1	85769			33891	6783	19795	19796	41289	41289					0.12178203913731522
PRGSFFLKIF	10	Unmodified	_PRGSFFLKIF_					0	0	0		ENST00000608290.1_1_22:46410950-46411199:+|nuORF	ENST00000608290.1_1_22:46410950-46411199:+|nuORF	ENST00000608290.1_1_22:46410950-46411199:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.37060546875	2	606.350409	1210.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.82	1	114.84	114.34	115.34	0.016708								0	0	0	0.38126	1	29853	29853		1.6526	1.0511	1				33892	12316	19796	19797	41290	41290					0.08934874536362258
PRGSQAPL	8	Unmodified	_PRGSQAPL_					0	0	0		ITGA8|p.G476Kfs*13|1|0.04|ENSG00000077943|chr10:15616533-15616534|-/TT|frameshift_variant;ITGA8|p.T475Kfs*15|1|0.04|ENSG00000077943|chr10:15616535-15616536|-/CATTT|frameshift_variant;ENSG00000077943|ENST00000378076|ITGA8	ITGA8|p.G476Kfs*13|1|0.04|ENSG00000077943|chr10:15616533-15616534|-/TT|frameshift_variant	ITGA8|p.G476Kfs*13|1|0.04|ENSG00000077943|chr10:15616533-15616534|-/TT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5502014160156	2	413.232502	824.450451	0.10359	4.2807E-05	-0.16068	-6.6399E-05	-0.05709	-2.3592E-05	413.23244239803086	22.533	0.43928	22.445	22.272	22.711	-0.087608					24	15	2	0	0	0	0.33993	1	3148	3148		11.64	0	1	42920			33893	1099	19797	19798	41291	41291					0.031203624117438267
PRHGPLPHLP	10	Unmodified	_PRHGPLPHLP_					0	0	0			REV__VANGL1|p.D228Efs*66|1|0.06|ENSG00000173218|chr1:115664139-115664140|-/AAAAAAG|frameshift_variant	REV__VANGL1|p.D228Efs*66|1|0.06|ENSG00000173218|chr1:115664139-115664140|-/AAAAAAG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2990112304688	2	560.82235	1119.63015	0.27653	0.00015509	-1.2516	-0.00070192	-0.97506	-0.00054683	560.8214137966356	21.781	0.42147	21.781	21.545	21.966	0					20	15	2	0	0	0	0.31926	1	2884	2884		5.7319	1.4026	1	73541	+		33894	23353	19798	19799	41292	41292					0.07511666419554786
PRHGPLPHLP	10	Unmodified	_PRHGPLPHLP_					0	0	0			REV__VANGL1|p.D228Efs*66|1|0.06|ENSG00000173218|chr1:115664139-115664140|-/AAAAAAG|frameshift_variant	REV__VANGL1|p.D228Efs*66|1|0.06|ENSG00000173218|chr1:115664139-115664140|-/AAAAAAG|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.82235	1119.63015	0.40313	0.00022608	-1.7516	-0.00098231	-1.3484	-0.00075623	560.8210899998513	21.781	0.59968	21.681	21.498	22.097	-0.10034	-0.048736	-0.00091797	NaN	5.7319	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57867	+		33895	23353	19798	19799							0.07511666419554786
PRHGPLPHLP	10	Unmodified	_PRHGPLPHLP_					0	0	0			REV__VANGL1|p.D228Efs*66|1|0.06|ENSG00000173218|chr1:115664139-115664140|-/AAAAAAG|frameshift_variant	REV__VANGL1|p.D228Efs*66|1|0.06|ENSG00000173218|chr1:115664139-115664140|-/AAAAAAG|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	560.82235	1119.63015	0.19805	0.00011107	-0.51291	-0.00028765	-0.31486	-0.00017658	560.822155780446	21.776	0.38545	21.727	21.52	21.905	-0.049377	-0.0030758	0.00047136	NaN	5.7319	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51458	+		33896	23353	19798	19799							0.07511666419554786
PRHIYMYK	8	Unmodified	_PRHIYMYK_					0	0	0			REV__ENSG00000165185|ENST00000337530|KIAA1958	REV__ENSG00000165185|ENST00000337530|KIAA1958	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2936401367188	2	554.292037	1106.56952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.96	1	21.91	21.41	22.41	-0.049377								0	0	0	0.37724	1	2998	2998		2.3027	0.4585	1		+		33897	17214	19799	19800	41293	41293					0.02049813044959592
PRHNKWLN	8	Unmodified	_PRHNKWLN_					0	0	0			REV__ENSG00000165905|ENST00000401752|LARGE2	REV__ENSG00000165905|ENST00000401752|LARGE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3348999023438	2	532.79105	1063.56755	0.46434	0.00024739	1.2513	0.00066668	1.7156	0.00091408	532.7917536011573	17.029	0.55636	17.029	16.839	17.396	0					31	19	2	0	0	0	0.34408	1	1582	1582		2.3027	0	1	63597	+		33898	17274	19800	19801	41294	41294					0.038305203513800734
PRHQHAFFGE	10	Unmodified	_PRHQHAFFGE_					0	0	0			REV__ENSG00000137343|ENST00000330083|ATAT1	REV__ENSG00000137343|ENST00000330083|ATAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.754638671875	2	613.296696	1224.57884	0.1004	6.1574E-05	0.55562	0.00034076	0.65602	0.00040234	613.2958934843925	31.699	1.0557	31.741	30.939	31.994	0.042366					58	37	2	0	0	0	0.31629	1	5940	5940		10.074	0.6908	1	294310	+		33899	15857	19801	19802	41295	41295					-0.02446702345173435
PRHRRLHR	8	Unmodified	_PRHRRLHR_					0	0	0		ENSG00000140511|ENST00000359595|HAPLN3	ENSG00000140511|ENST00000359595|HAPLN3	ENSG00000140511|ENST00000359595|HAPLN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.3412475585938	2	564.342107	1126.66966	0.14781	8.3415E-05	-1.2437	-0.00070187	-1.0959	-0.00061846	564.3414138486207	16.153	0.43368	16.09	15.917	16.351	-0.062534					30	14	3	0	0	0	0.46491	1	1243	1243		0.69038	0	1	52009			33900	4312	19802	19803	41296	41296					0.11139231213633138
PRHYRPLH	8	Unmodified	_PRHYRPLH_					0	0	0			REV__ENST00000500074.2_1_3:129823014-129824450:-|nuORF	REV__ENST00000500074.2_1_3:129823014-129824450:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8184814453125	2	538.299042	1074.58353	0.13903	7.4842E-05	3.4958	0.0018818	3.6348	0.0019566	538.3012149427723	12.917	0.49423	12.917	12.815	13.309	0					25	17	2	0	0	0	0.34408	1	330	330		2.3027	0.4585	1	80096	+		33901	21703	19803	19804	41297	41297					0.04922226588269041
PRIASNAGSIA	11	Unmodified	_PRIASNAGSIA_					0	0	0		ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2471313476562	2	528.793455	1055.57236	0.27942	0.00014775	-0.008288	-4.3826E-06	0.27113	0.00014337	528.7931643094014	29.585	0.40285	29.598	29.421	29.824	0.013475					35	13	4	0	0	0	0.24928	1	5297	5297		42.835	12.61	1	318560			33902	3223	19804	19805	41298	41298					0.04679359703482078
PRIFLVDKV	9	Unmodified	_PRIFLVDKV_					0	0	0			REV__ENSG00000102221|ENST00000614628|JADE3	REV__ENSG00000102221|ENST00000614628|JADE3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2933349609375	2	543.837134	1085.65972	0.83062	0.00045172	3.4294	0.001865	4.26	0.0023168	543.8388733461913	33.859	0.40014	33.859	33.674	34.074	0					19	14	2	0	0	0	0.24289	1	6639	6639		5.2969	0	1	189880	+		33903	14311	19805	19806	41299	41299					0.12031185645037112
PRIKQQQP	8	Unmodified	_PRIKQQQP_					0	0	0		ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1	ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7934265136719	2	497.793258	993.571963	0.35528	0.00017686	-0.34504	-0.00017176	0.010247	5.1007E-06	497.79304260255753	24.866	0.9262	24.866	24.34	25.267	0					52	31	2	0	0	0	0.43043	1	3874	3874		12.532	0.89125	1	102770			33904	6510	19806	19807	41300	41300					0.07491984774276261
PRIRQVIQEF	10	Unmodified	_PRIRQVIQEF_					0	0	0		ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.2509460449219	3	429.250695	1284.73025	0.096785	4.1545E-05	-0.082799	-3.5541E-05	0.013986	6.0036E-06	429.25061861023113	45.963	0.52466	46.028	45.703	46.227	0.065048					26	18	2	0	0	0	0.37568	1	10303	10303		7.9454	1.3219	1	735250			33905	5167	19807	19808	41301	41301					0.09927858962691971
PRITFPGL	8	Unmodified	_PRITFPGL_					0	0	0		ENSG00000182866|ENST00000336890|LCK;nc|ENSG00000182866|P06239-3|LCK;ENST00000469956.1_1_1:32741525-32742647:+|nuORF;nc|ENSG00000182866|P06239-2|LCK;ENST00000469765.5_1_1:32739930-32745396:+|nuORF	ENSG00000182866|ENST00000336890|LCK	ENSG00000182866|ENST00000336890|LCK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.762939453125	2	450.76872	899.522887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.027	1	76.996	76.496	77.496	-0.031334								0	0	0	0.33432	1	19848	19848		21.747	0	1				33906	7326	19808	19809	41302	41302					0.06910696485329026
PRIVSSFSE	9	Unmodified	_PRIVSSFSE_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.83746337890625	2	511.269281	1020.52401	-0.0089832	-4.5929E-06	1.8583	0.00095009	1.8493	0.00094549	511.2702512990172	39.69	0.12775	39.69	39.595	39.723	0					7	4	2	0	0	0	0.25526	1	8404	8404		7.9102	2.1497	1	78800			33907	6961	19809	19810	41303	41303					0.0145686606357458
PRKEAESL	8	Unmodified	_PRKEAESL_					0	0	0			REV__ENSG00000168875|ENST00000306087|SOX14	REV__ENSG00000168875|ENST00000306087|SOX14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2454528808594	2	465.256174	928.497795	0.086014	4.0019E-05	0.0015645	7.2789E-07	0.087579	4.0746E-05	465.2560608337854	33.183	0.36025	33.238	33.069	33.429	0.054371					21	12	2	0	0	0	0.32099	1	6378	6378		25.399	0	1	134070	+		33908	17484	19810	19811	41304	41304					0.03068596892092046
PRKEAESL	8	Unmodified	_PRKEAESL_					0	0	0			REV__ENSG00000168875|ENST00000306087|SOX14	REV__ENSG00000168875|ENST00000306087|SOX14	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	465.256174	928.497795	-0.066323	-3.0857E-05	-0.019788	-9.2063E-06	-0.08611	-4.0063E-05	465.2560679061529	33.157	0.42119	33.212	32.973	33.394	0.055309	-0.017278	-0.00022015	NaN	19.257	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161840	+		33909	17484	19810	19811							0.03068596892092046
PRKEVPKTT	9	Unmodified	_PRKEVPKTT_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8139038085938	2	528.314023	1054.61349	0.20687	0.00010929	0.066512	3.5139E-05	0.27339	0.00014443	528.8138983692609	118.74	1.8195	118.72	118.15	119.97	-0.024147					433	229	2	0	0	0	0.33276	1	30771	30771		3.9444	2.1002	1	25102			33910	2814	19811	19812	41305	41305					0.08837120742941806
PRKFFGIKW	9	Unmodified	_PRKFFGIKW_					0	0	0			REV__ENST00000506275.1_1_5:52229685-52248278:+|nuORF	REV__ENST00000506275.1_1_5:52229685-52248278:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8458251953125	2	589.845294	1177.67603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.55	1	115.57	115.07	116.07	0.018738								0	0	0	0.26829	1	30010	30010		0	0	1		+		33911	19050	19812	19813	41306	41306					0.09430311601818175
PRKGQRTALPA	11	Unmodified	_PRKGQRTALPA_					0	0	0			REV__ENSG00000125965|ENST00000374369|GDF5	REV__ENSG00000125965|ENST00000374369|GDF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8565673828125	2	597.856921	1193.69929	0.53282	0.00031855	-0.17984	-0.00010752	0.35298	0.00021103	597.8569574362817	90.616	0.40546	90.706	90.516	90.921	0.090675					73	31	3	0	0	0	0.43149	1	24022	24022		7.1017	1.3699	1	255130	+		33912	15293	19813	19814	41307	41307					0.11018705648439209
PRKKNFEK	8	Unmodified	_PRKKNFEK_					0	0	0		chr10:14667691-14774253|494|18.96|0.08|7.87|-|1|FAM107B,FAM107B|1	chr10:14667691-14774253|494|18.96|0.08|7.87|-|1|FAM107B,FAM107B|1	chr10:14667691-14774253|494|18.96|0.08|7.87|-|1|FAM107B,FAM107B|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2586059570312	2	523.808908	1045.60326	0.14559	7.6263E-05	-2.2914	-0.0012003	-2.1458	-0.001124	523.8083678637364	14.456	0.26742	14.351	14.273	14.54	-0.10466					12	8	2	0	0	0	0.34353	1	783	783		4.756	0.42677	1	38380			33913	115	19814	19815	41308	41308					0.08228557808365622
PRKKNFEK	8	Unmodified	_PRKKNFEK_					0	0	0		chr10:14667691-14774253|494|18.96|0.08|7.87|-|1|FAM107B,FAM107B|1	chr10:14667691-14774253|494|18.96|0.08|7.87|-|1|FAM107B,FAM107B|1	chr10:14667691-14774253|494|18.96|0.08|7.87|-|1|FAM107B,FAM107B|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2586059570312	2	523.808908	1045.60326	0.13834	7.2462E-05	-2.8769	-0.0015069	-2.7385	-0.0014345	523.8077262133592	14.447	0.26732	14.381	14.32	14.588	-0.066068					12	9	2	0	0	0	0.34353	1	779	779		4.756	2.1785	1	28893			33914	115	19814	19815	41309	41309					0.08228557808365622
PRKKSGRR	8	Unmodified	_PRKKSGRR_					0	0	0			REV__ARHGEF17|p.P1183Lfs*7|1|0.44|ENSG00000110237|chr11:73355626-73355626|C/-|frameshift_variant	REV__ARHGEF17|p.P1183Lfs*7|1|0.44|ENSG00000110237|chr11:73355626-73355626|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.28778076171875	2	492.812316	983.61008	0.26921	0.00013267	2.1562	0.0010626	2.4254	0.0011953	492.81359859549246	23.107	0.34937	23.062	22.817	23.167	-0.044867					18	12	2	0	0	0	0.34414	1	3296	3296		2.0598	1.3694	1	49115	+		33915	13113	19815	19816	41310	41310					0.11761915479610252
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.859619140625	2	641.859326	1281.7041	-0.01128	-7.2404E-06	0.14322	9.193E-05	0.13194	8.4689E-05	641.8597453464644	103.26	0.70338	103.26	102.85	103.56	0					592	102	7	0	0	0	0.38187	4	27490	27368;27404;27434;27490		13.615	4.0709	1	107790000			33916	1333	19816	19817	41311;41312;41313;41314	41314					0.07451545000549231
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8596801757812	2	641.859326	1281.7041	-0.011324	-7.2684E-06	0.066478	4.2669E-05	0.055154	3.5401E-05	641.8597387769483	103.6	1.6101	103.6	103.44	105.05	0					841	226	7	0	0	0	0.38187	7	27515	27515;27545;27575;27606;27635;27666;27726		13.615	4.0709	1	95983000			33917	1333	19816	19817	41315;41316;41317;41318;41319;41320;41321	41315					0.07451545000549231
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8599243164062	2	641.859326	1281.7041	0.2479	0.00015912	0.3764	0.0002416	0.6243	0.00040071	641.8596645593194	103.19	0.70731	103.2	102.81	103.51	0.0082703					497	101	6	0	0	0	0.38187	5	27430	27367;27400;27430;27457;27485		13.615	6.5131	1	126640000			33918	1333	19816	19817	41322;41323;41324;41325;41326	41324					0.07451545000549231
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8598022460938	2	641.859326	1281.7041	0.24823	0.00015933	0.15197	9.7542E-05	0.4002	0.00025687	641.8595398374342	103.61	1.6	103.62	103.45	105.05	0.0082626					937	227	6	0	0	0	0.40332	6	27543	27514;27543;27575;27607;27639;27701		10.8	3.6978	1	101130000			33919	1333	19816	19817	41327;41328;41329;41330;41331;41332	41328					0.07451545000549231
PRKKSPNELVD	11	Unmodified	_PRKKSPNELVD_					0	0	0		nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	nc|ENSG00000088833|Q9UNZ2-4|NSFL1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8596801757812	2	641.859326	1281.7041	0.42396	0.00027212	-0.0025291	-1.6233E-06	0.42143	0.0002705	641.8590275740343	105.86	0.75201	105.86	105.44	106.19	0.0031738					219	108	3	0	0	0	0.43149	1	28089	28089		7.1017	0	1	294710			33920	1333	19816	19817	41333	41333					0.07451545000549231
PRKLLLELRP	10	Unmodified	_PRKLLLELRP_					0	0	0		ENST00000296575.7_1_4:145567307-145567847:+|nuORF	ENST00000296575.7_1_4:145567307-145567847:+|nuORF	ENST00000296575.7_1_4:145567307-145567847:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2314453125	3	412.271319	1233.79213	0.010158	4.1879E-06	2.0842	0.00085926	2.0944	0.00086345	412.2721385861859	33.361	0.38797	33.428	33.297	33.685	0.066704					15	13	2	0	0	0	0.32082	1	6444	6444		3.3196	1.7274	1	109950			33921	9186	19817	19818	41334	41334					0.18458210381822937
PRKLVNTINP	10	Unmodified	_PRKLVNTINP_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.6812133789062	2	576.348397	1150.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.636	1	91.636	91.136	92.136	0								0	0	0	0.37664	1	24340	24340		3.5965	1.7523	1				33922	322	19818	19819	41335	41335					0.11292785042655851
PRKLVNTINP	10	Unmodified	_PRKLVNTINP_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.2938842773438	2	576.348397	1150.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.9	1	110.9	110.4	111.4	0								0	0	0	0.37664	1	28886	28886		3.5965	0.31518	1				33923	322	19818	19819	41336	41336					0.11292785042655851
PRKNATLDQ	9	Unmodified	_PRKNATLDQ_					0	0	0			REV__ENST00000489585.5_1_1:236046543-236046774:-|nuORF	REV__ENST00000489585.5_1_1:236046543-236046774:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3322143554688	2	521.78563	1041.55671	0.12841	6.7004E-05	0.9253	0.00048281	1.0537	0.00054981	521.785995861957	13.947	0.51321	13.947	13.794	14.307	0					29	17	2	0	0	0	0.25779	1	543	543		3.2813	0	1	288950	+		33924	21594	19819	19820	41337	41337					0.037590731864384
PRKQGLLMF	9	Unmodified	_PRKQGLLMF_					0	0	0			REV__ENST00000380680.4_1_13:30341274-30341358:-|nuORF	REV__ENST00000380680.4_1_13:30341274-30341358:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3165283203125	2	545.315512	1088.61647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.28	1	119.26	118.76	119.76	-0.024147								0	0	0	0.26704	1	30796	30796		0.6015	0.076735	1		+		33925	20552	19820	19821	41338	41338					0.07570672596125405
PRKQRRKI	8	Unmodified	_PRKQRRKI_					0	0	0		nc|ENSG00000106823|O94769-2|ECM2;ENSG00000106823|ENST00000344604|ECM2	nc|ENSG00000106823|O94769-2|ECM2	nc|ENSG00000106823|O94769-2|ECM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7774658203125	2	541.356891	1080.69923	0.65285	0.00035343	1.737	0.00094035	2.3899	0.0012938	541.3577111753078	26.421	0.65551	26.398	26.185	26.841	-0.022238					43	22	3	0	0	0	0.34337	1	4410	4410		5.2307	0	1	199700			33926	2104	19821	19822	41339	41339					0.16210750439131516
PRKRFHLL	8	Unmodified	_PRKRFHLL_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.8333129882812	2	533.83526	1065.65597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.515	1	17.515	17.015	18.015	0								0	0	0	0.37664	1	1653	1653		2.5775	0.73324	1				33927	6220	19822	19823	41340	41340					0.1257656066184154
PRKRPPVT	8	Unmodified	_PRKRPPVT_					0	0	0		nc|ENSG00000115266|O95996-2|APC2;nc|ENSG00000115266|O95996-3|APC2;ENSG00000115266|ENST00000590469|APC2	nc|ENSG00000115266|O95996-2|APC2	nc|ENSG00000115266|O95996-2|APC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.282470703125	2	475.798343	949.582134	0.074937	3.5655E-05	-0.72799	-0.00034638	-0.65305	-0.00031072	475.7983068677697	27.08	0.62111	27.08	26.759	27.38	0					52	21	4	0	0	0	0.34408	1	4604	4604		2.3027	0	1	206750			33928	2626	19823	19824	41341	41341					0.10532592499521343
PRKSFRPED	9	Unmodified	_PRKSFRPED_					0	0	0		ENST00000586659.5_1_19:11275916-11276213:-|nuORF	ENST00000586659.5_1_19:11275916-11276213:-|nuORF	ENST00000586659.5_1_19:11275916-11276213:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.3165893554688	2	566.298904	1130.58326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.203	1	27.203	26.703	27.703	0								0	0	0	0.22933	1	4585	4585		13.042	2.2185	1				33929	12120	19824	19825	41342	41342					0.023187620777662232
PRKSQYLR	8	Unmodified	_PRKSQYLR_					0	0	0		ENSG00000164509|ENST00000652347|IL31RA;nc|ENSG00000164509|Q8NI17-6|IL31RA;nc|ENSG00000164509|Q8NI17|IL31RA;nc|ENSG00000164509|Q8NI17-12|IL31RA	ENSG00000164509|ENST00000652347|IL31RA	ENSG00000164509|ENST00000652347|IL31RA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2883911132812	2	524.306532	1046.59851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.467	1	21.418	20.918	21.918	-0.049377								0	0	0	0.37724	1	2849	2849		2.3027	0.24298	1				33930	5851	19825	19826	41343	41343					0.07707673665595394
PRKTTLRPK	9	Unmodified	_PRKTTLRPK_					0	0	0			REV__ENST00000413663.1_1_3:43526466-43526670:-|nuORF	REV__ENST00000413663.1_1_3:43526466-43526670:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2968139648438	2	548.851107	1095.68766	0.15769	8.6546E-05	0.2847	0.00015626	0.44239	0.0002428	548.851274935889	15.479	0.39059	15.479	15.289	15.679	0					20	12	2	0	0	0	0.26188	1	1022	1022		1.6526	1.6526	1	48652	+		33931	20794	19826	19827	41344	41344					0.14364508625135386
PRKTTLRPK	9	Unmodified	_PRKTTLRPK_					0	0	0			REV__ENST00000413663.1_1_3:43526466-43526670:-|nuORF	REV__ENST00000413663.1_1_3:43526466-43526670:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3250732421875	2	548.851107	1095.68766	0.28434	0.00015606	-0.26055	-0.00014301	0.023789	1.3057E-05	548.8509593881126	15.609	0.41108	15.499	15.285	15.696	-0.10981					22	13	3	0	0	0	0.26168	1	1021	1021		1.8442	0.19162	1	37320	+		33932	20794	19826	19827	41345	41345					0.14364508625135386
PRKTTTTV	8	Unmodified	_PRKTTTTV_					0	0	0			REV__nc|ENSG00000102181|Q8TCZ2-2|CD99L2	REV__nc|ENSG00000102181|Q8TCZ2-2|CD99L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.25421142578125	2	452.266542	902.51853	-0.09306	-4.2088E-05	-4.3411	-0.0019633	-4.4341	-0.0020054	452.2644458917488	14.728	0.30562	14.623	14.489	14.795	-0.10466					22	10	3	0	0	0	0.4397	1	821	821		9.3474	0.75416	1	67461	+		33933	14309	19827	19828	41346	41346					0.0633718727174255
PRKTTTTV	8	Unmodified	_PRKTTTTV_					0	0	0			REV__nc|ENSG00000102181|Q8TCZ2-2|CD99L2	REV__nc|ENSG00000102181|Q8TCZ2-2|CD99L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.25421142578125	2	452.266542	902.51853	-0.12917	-5.8419E-05	-4.2911	-0.0019407	-4.4203	-0.0019992	452.264384020167	14.723	0.33309	14.657	14.563	14.896	-0.066068					18	11	2	0	0	0	0.4419	1	812	812		8.5933	0	1	83430	+		33934	14309	19827	19828	41347	41347					0.0633718727174255
PRKTTTTV	8	Unmodified	_PRKTTTTV_					0	0	0			REV__nc|ENSG00000102181|Q8TCZ2-2|CD99L2	REV__nc|ENSG00000102181|Q8TCZ2-2|CD99L2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	452.266542	902.51853	-0.12655	-5.7233E-05	-4.7246	-0.0021368	-4.8511	-0.002194	452.2642668073086	14.645	0.31371	14.645	14.505	14.819	0	0.0030483	-0.00014349	NaN	9.3474	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67337	+		33935	14309	19827	19828							0.0633718727174255
PRKTTTTV	8	Unmodified	_PRKTTTTV_					0	0	0			REV__nc|ENSG00000102181|Q8TCZ2-2|CD99L2	REV__nc|ENSG00000102181|Q8TCZ2-2|CD99L2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	452.266542	902.51853	-0.09306	-4.2088E-05	-4.3411	-0.0019633	-4.4341	-0.0020054	452.2644458917488	14.728	0.30562	14.623	14.489	14.795	-0.10466	-0.018582	0.00020337	NaN	9.3474	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67461	+		33936	14309	19827	19828							0.0633718727174255
PRKTTTTV	8	Unmodified	_PRKTTTTV_					0	0	0			REV__nc|ENSG00000102181|Q8TCZ2-2|CD99L2	REV__nc|ENSG00000102181|Q8TCZ2-2|CD99L2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	452.266542	902.51853	-0.12917	-5.8419E-05	-4.2911	-0.0019407	-4.4203	-0.0019992	452.264384020167	14.723	0.33309	14.657	14.563	14.896	-0.066068	0.015534	0.00024855	NaN	9.3474	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83430	+		33937	14309	19827	19828							0.0633718727174255
PRKVLHELK	9	Unmodified	_PRKVLHELK_					0	0	0			REV__KDM2B|p.W251Pfs*33|1|0.32|ENSG00000089094|chr12:121534520-121534524|ACCAA/-|frameshift_variant	REV__KDM2B|p.W251Pfs*33|1|0.32|ENSG00000089094|chr12:121534520-121534524|ACCAA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.7756958007812	2	560.353483	1118.69241	0.49376	0.00027668	-0.83084	-0.00046557	-0.33708	-0.00018888	560.3529943458249	21.489	0.47776	21.389	21.13	21.608	-0.10034					27	16	2	0	0	0	0.26188	1	2816	2816		1.6526	0.17072	1	78850	+		33938	14024	19828	19829	41348	41348					0.13781392767873513
PRLELLLKRP	10	Unmodified	_PRLELLLKRP_					0	0	0			REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2313537597656	3	412.271319	1233.79213	0.28475	0.00011739	1.9266	0.00079429	2.2114	0.00091169	412.2721411966728	33.245	0.27444	33.3	33.199	33.473	0.055309					14	9	2	0	0	0	0.32143	1	6440	6440		1.5923	0.13716	1	94279	+		33939	19797	19829	19830	41349	41349					0.18458210381845674
PRLERILL	8	Unmodified	_PRLERILL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2770080566406	2	505.329476	1008.6444	0.45248	0.00022865	0.010434	5.2728E-06	0.46291	0.00023392	505.329294063697	57.132	0.4153	57.132	56.908	57.323	0					23	15	2	0	0	0	0.29969	1	13778	13778		27.629	14.586	1	227750			33940	8667	19830	19831	41350	41350					0.14042318847839397
PRLERILL	8	Unmodified	_PRLERILL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2772216796875	2	505.329476	1008.6444	0.30658	0.00015492	0.24982	0.00012624	0.5564	0.00028116	505.32961317984933	57.037	0.35203	57.116	56.909	57.261	0.078674					20	12	2	0	0	0	0.30795	1	13703	13703		24.021	9.1823	1	208550			33941	8667	19830	19831	41351	41351					0.14042318847839397
PRLERILL	8	Unmodified	_PRLERILL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	505.329476	1008.6444	0.23036	0.00011641	0.24339	0.00012299	0.47375	0.0002394	505.3296571460884	57.231	0.35769	57.214	57.006	57.364	-0.017208	0.059858	7.7227E-05	NaN	16.149	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150890			33942	8667	19830	19831							0.14042318847839397
PRLETILA	8	Unmodified	_PRLETILA_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D;KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7666931152344	2	456.779285	911.544017	-0.0025017	-1.1427E-06	-0.67268	-0.00030727	-0.67518	-0.00030841	456.77922534377325	16.512	0.59718	16.512	16.123	16.72	0					44	20	3	0	0	0	0.45942	1	1298	1298		2.5775	0	1	133480			33943	455;3253	19831	19832	41352	41352					0.08470661794171974
PRLETKSL	8	Unmodified	_PRLETKSL_					0	0	0		nc|ENSG00000091542|Q6P6C2-3|ALKBH5;ENSG00000091542|ENST00000399138|ALKBH5;nc|ENSG00000091542|Q6P6C2-1|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7527160644531	2	472.282192	942.549831	0.054671	2.582E-05	-0.40893	-0.00019313	-0.35426	-0.00016731	472.28199494786384	26.317	0.39361	26.278	26.153	26.547	-0.038671					20	13	2	0	0	0	0.32937	1	4321	4321		22.736	2.2827	1	102750			33944	1406	19832	19833	41353	41353					0.07625760305836593
PRLHAAAAAA	10	Unmodified	_PRLHAAAAAA_					0	0	0		ENST00000338353.3_1_1:166135560-166136198:-|nuORF	ENST00000338353.3_1_1:166135560-166136198:-|nuORF	ENST00000338353.3_1_1:166135560-166136198:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.77197265625	2	474.772326	947.530098	-0.057844	-2.7463E-05	-0.018454	-8.7617E-06	-0.076298	-3.6224E-05	474.7721870496781	16.004	1.4753	16.004	15.072	16.548	0					155	51	4	0	0	0	0.36002	1	1014	1014		10.824	0.75	1	899750			33945	9504	19833	19834	41354	41354					0.054234290857380074
PRLKRGPKK	9	Unmodified	_PRLKRGPKK_					0	0	0			REV__nc|ENSG00000151725|Q71F23-3|CENPU	REV__nc|ENSG00000151725|Q71F23-3|CENPU	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3635864257812	2	540.361642	1078.70873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.868	1	38.868	38.368	39.368	0								0	0	0	0.25631	1	8145	8145		4.3292	0	1		+		33946	16554	19834	19835	41355	41355					0.17252518724649235
PRLLLLKVVLL	11	Unmodified	_PRLLLLKVVLL_					0	0	0			REV__ENST00000555988.1_2_14:75356010-75360059:+|nuORF	REV__ENST00000555988.1_2_14:75356010-75360059:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.3059387207031	3	426.307481	1275.90061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.36	1	23.315	22.815	23.815	-0.044867								0	0	0	0.38222	1	3422	3422		0.094841	0.094841	1		+		33947	22253	19835	19836	41356	41356					0.27370001632266394
PRLLTSEQRF	10	Unmodified	_PRLLTSEQRF_					0	0	0		ENST00000358912.4_1_2:64335433-64371452:-|nuORF	ENST00000358912.4_1_2:64335433-64371452:-|nuORF	ENST00000358912.4_1_2:64335433-64371452:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.23516845703125	3	416.234933	1245.68297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.1	1	103.11	102.61	103.61	0.0082703								0	0	0	0.37666	1	27413	27413		3.5871	2.1319	1				33948	9655	19836	19837	41357	41357					0.0699557969169291
PRLPTGHI	8	Unmodified	_PRLPTGHI_					0	0	0		ENST00000591665.1_1_19:55671250-55674120:+|nuORF	ENST00000591665.1_1_19:55671250-55674120:+|nuORF	ENST00000591665.1_1_19:55671250-55674120:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.75006103515625	2	445.763969	889.513385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.457	1	77.457	76.957	77.957	0								0	0	0	0.36961	1	19995	19995		5.7604	0	1				33949	12188	19837	19838	41358	41358					0.06420928199793252
PRLQPERHTK	10	Unmodified	_PRLQPERHTK_					0	0	0			REV__nc|ENSG00000240021|Q5T0J7-4|TEX35	REV__nc|ENSG00000240021|Q5T0J7-4|TEX35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7275085449219	3	421.242311	1260.7051	-0.038688	-1.6297E-05	1.0747	0.00045272	1.036	0.00043642	421.2427641384536	17.692	0.98902	17.631	17.18	18.169	-0.060429					59	34	2	0	0	0	0.32082	1	1752	1752		3.3196	1.4133	1	39703	+		33950	19167	19838	19839	41359	41359					0.08517804160123887
PRLQPERHTK	10	Unmodified	_PRLQPERHTK_					0	0	0			REV__nc|ENSG00000240021|Q5T0J7-4|TEX35	REV__nc|ENSG00000240021|Q5T0J7-4|TEX35	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	421.242311	1260.7051	-0.16474	-6.9397E-05	1.3537	0.00057024	1.189	0.00050084	421.24289283006397	17.613	1.2505	17.496	16.965	18.215	-0.11739	-0.067773	0.00020711	NaN	7.9454	60	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47564	+		33951	19167	19838	19839							0.08517804160123887
PRLRPFLAAA	10	Unmodified	_PRLRPFLAAA_					0	0	0		ENST00000595348.1_1_19:8576453-8576675:-|nuORF;nc|ENSG00000133250|Q96IQ9|ZNF414;ENSG00000133250|ENST00000393927|ZNF414	ENST00000595348.1_1_19:8576453-8576675:-|nuORF	ENST00000595348.1_1_19:8576453-8576675:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.746826171875	2	556.340375	1110.6662	-0.028508	-1.586E-05	-0.073097	-4.0667E-05	-0.1016	-5.6527E-05	556.3403042760442	15.257	0.63078	15.192	15.069	15.7	-0.064414					28	20	2	0	0	0	0.318	1	985	985		7.2892	0.56607	1	58204			33952	3702	19839	19840	41360	41360					0.1152912359639231
PRLSKNQKY	9	Unmodified	_PRLSKNQKY_					0	0	0		nc|ENSG00000168314|Q13875-3|MOBP;nc|ENSG00000168314|Q13875-2|MOBP;ENSG00000168314|ENST00000684792|MOBP;nc|ENSG00000168314|Q13875-4|MOBP	nc|ENSG00000168314|Q13875-3|MOBP	nc|ENSG00000168314|Q13875-3|MOBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.77734375	2	567.324922	1132.63529	0.22905	0.00012994	-0.92239	-0.00052329	-0.69334	-0.00039335	567.3251921585504	17.412	0.46794	17.412	17.069	17.537	0					20	16	2	0	0	0	0.25938	1	1634	1634		4.3292	0.73274	1	23407			33953	6268	19840	19841	41361	41361					0.07427925491515452
PRLTCSKPL	9	Unmodified	_PRLTCSKPL_					0	0	0		ENST00000469209.1_1_17:38345476-38347143:+|nuORF	ENST00000469209.1_1_17:38345476-38347143:+|nuORF	ENST00000469209.1_1_17:38345476-38347143:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.79052734375	2	507.791869	1013.56919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.287	1	59.272	58.772	59.772	-0.014267								0	0	0	0.18639	1	14420	14420		26.268	2.2476	1				33954	10853	19841	19842	41362	41362					0.06294393325106284
PRLTLRKE	8	Unmodified	_PRLTLRKE_					0	0	0		ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL;ENST00000497613.2_1_8:145658938-145666334:-|nuORF	ENSG00000160949|ENST00000409379|TONSL	ENSG00000160949|ENST00000409379|TONSL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2431335449219	2	506.816733	1011.61891	0.096549	4.8933E-05	0.92286	0.00046772	1.0194	0.00051666	506.8172080956439	22.721	0.46251	22.721	22.533	22.996	0					24	15	2	0	0	0	0.34414	1	3257	3257		0.52476	0	1	59796			33955	5500	19842	19843	41363	41363					0.1135684432541666
PRLWRRPSF	9	Unmodified	_PRLWRRPSF_					0	0	0			REV__ENST00000489475.5_2_17:46629616-46659839:-|nuORF	REV__ENST00000489475.5_2_17:46629616-46659839:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5679016113281	3	405.568358	1213.68324	-0.43258	-0.00017544	-1.2569	-0.00050974	-1.6894	-0.00068518	405.56800647715784	35.33	1.4647	35.406	34.788	36.252	0.075306					156	52	5	0	0	0	0.2869	1	7101	7101		10.8	2.3552	1	3463300	+		33956	21593	19843	19844	41364	41364					0.08495044202209101
PRMKRRDHI	9	Unmodified	_PRMKRRDHI_					0	0	0			REV__ENSG00000170837|ENST00000304411|GPR27	REV__ENSG00000170837|ENST00000304411|GPR27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2148742675781	3	403.564619	1207.67203	0.17133	6.9144E-05	1.5019	0.00060611	1.6732	0.00067525	403.56513061696904	33.792	1.0261	33.792	33.31	34.336	0					72	36	3	0	0	0	0.25612	1	6739	6739		8.1555	1.5252	1	136370	+		33957	17600	19844	19845	41365	41365					0.07649898836439206
PRMLDPQTEEK	11	Unmodified	_PRMLDPQTEEK_					0	0	0		nc|ENSG00000292363|Q9HC73-3|CRLF2;ENSG00000205755|ENST00000400841|CRLF2	nc|ENSG00000292363|Q9HC73-3|CRLF2	nc|ENSG00000292363|Q9HC73-3|CRLF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7510986328125	3	448.558977	1342.6551	0.52494	0.00023547	0.034921	1.5664E-05	0.55986	0.00025113	448.55904760410465	20.533	0.5201	20.48	20.229	20.749	-0.052912					27	18	2	0	0	0	0.33236	1	2629	2629		4.4062	0.81909	1	92723			33958	8302	19845	19846	41366	41366					-0.002521113507100381
PRNHIENQ	8	Unmodified	_PRNHIENQ_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37;ENST00000490670.1_1_1:54670749-54673061:+|nuORF	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.77923583984375	2	504.254497	1006.49444	0.033736	1.7012E-05	-0.0084283	-4.25E-06	0.025308	1.2762E-05	504.2544869055051	15.082	0.25158	15.082	14.981	15.232	0					13	8	2	0	0	0	0.34337	1	932	932		2.3027	0	1	61783			33959	2715	19846	19847	41367	41367					-0.008546531619231246
PRNHLSFLG	9	Unmodified	_PRNHLSFLG_					0	0	0			REV__ENST00000517951.5_1_5:156945892-156946956:-|nuORF	REV__ENST00000517951.5_1_5:156945892-156946956:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7669677734375	2	520.785433	1039.55631	0.29281	0.00015249	0.29963	0.00015604	0.59244	0.00030853	520.7855876320169	31.569	1.5811	31.569	31.284	32.865	0					137	56	4	0	0	0	0.29176	1	6273	6273		10.074	0	1	12801000	+		33960	21861	19847	19848	41368	41368					0.03811698257209173
PRNHPYRYRK	10	Unmodified	_PRNHPYRYRK_					0	0	0		nc|ENSG00000112200|Q9Y4E5-4|ZNF451	nc|ENSG00000112200|Q9Y4E5-4|ZNF451	nc|ENSG00000112200|Q9Y4E5-4|ZNF451	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.2635803222656	3	462.921571	1385.74288	0.14902	6.8984E-05	-1.429	-0.00066151	-1.28	-0.00059252	462.92097623482823	40.801	0.5001	40.894	40.637	41.138	0.09267					34	18	2	0	0	0	0.32082	1	8667	8667		3.3196	0.47636	1	296150			33961	12654	19848	19849	41369	41369					0.06544315145561086
PRNIKQGAL	9	Unmodified	_PRNIKQGAL_					0	0	0		ENST00000328086.11_1_16:25268480-25268591:-|nuORF	ENST00000328086.11_1_16:25268480-25268591:-|nuORF	ENST00000328086.11_1_16:25268480-25268591:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.8008728027344	2	498.801083	995.587613	0.39874	0.00019889	-0.83587	-0.00041693	-0.43713	-0.00021804	498.80062239746184	21.405	0.53812	21.355	21.066	21.604	-0.049377					35	18	2	0	0	0	0.28674	1	2866	2866		10.824	1.4408	1	108110			33962	9429	19849	19850	41370	41370					0.08964271291313253
PRNIPLTA	8	Unmodified	_PRNIPLTA_					0	0	0		nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D;ENST00000496402.2_1_2:233990465-233995359:+|nuORF	nc|ENSG00000168918|Q92835-2|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.2587585449219	2	441.263802	880.513051	0.15348	6.7723E-05	-0.13332	-5.8827E-05	0.02016	8.8959E-06	441.2636584901046	19.862	0.79178	19.746	19.461	20.253	-0.11592					88	27	4	0	0	0	0.45169	1	2472	2472		5.2307	0	1	1579800			33963	6313	19850	19851	41371	41371					0.06801508479929907
PRNLQYPE	8	Unmodified	_PRNLQYPE_					0	0	0		ENST00000584483.5_1_17:61912248-61912488:-|nuORF	ENST00000584483.5_1_17:61912248-61912488:-|nuORF	ENST00000584483.5_1_17:61912248-61912488:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7623291015625	2	508.761623	1015.50869	0.44869	0.00022828	1.3884	0.00070636	1.8371	0.00093463	508.7622434914256	20.801	0.82452	20.801	20.514	21.338	0					56	27	3	0	0	0	0.46022	1	2755	2755		2.3027	0.24298	1	275790			33964	12094	19851	19852	41372	41372					0.001559992663715093
PRNLTQPR	8	Unmodified	_PRNLTQPR_					0	0	0			REV__ENSG00000185219|ENST00000396077|ZNF445	REV__ENSG00000185219|ENST00000396077|ZNF445	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.28289794921875	2	491.283057	980.551562	0.016245	7.9808E-06	-0.20165	-9.9068E-05	-0.18541	-9.1087E-05	491.2829541845125	13.481	1.3404	13.481	13.282	14.623	0					125	46	4	0	0	0	0.44389	1	604	604		7.9102	0.62092	1	1501000	+		33965	18363	19852	19853	41373	41373					0.06050814114462355
PRNLTQPR	8	Unmodified	_PRNLTQPR_					0	0	0			REV__ENSG00000185219|ENST00000396077|ZNF445	REV__ENSG00000185219|ENST00000396077|ZNF445	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.2831115722656	2	491.283057	980.551562	-0.016825	-8.2659E-06	-0.062806	-3.0855E-05	-0.079631	-3.9121E-05	491.2829934079682	13.562	1.4114	13.462	13.217	14.629	-0.099291					113	49	4	0	0	0	0.44389	1	636	636		7.9102	0.62092	1	1357200	+		33966	18363	19852	19853	41374	41374					0.06050814114462355
PRNSHPHSI	9	Unmodified	_PRNSHPHSI_					0	0	0		ENSG00000088053|ENST00000310373|GP6	ENSG00000088053|ENST00000310373|GP6	ENSG00000088053|ENST00000310373|GP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7705078125	2	522.770314	1043.52608	0.21669	0.00011328	-0.59104	-0.00030898	-0.37435	-0.0001957	522.7699338893851	16.317	0.4342	16.203	15.987	16.421	-0.11434					25	14	2	0	0	0	0.27726	1	1300	1300		12.241	0	1	67760			33967	1316	19853	19854	41375	41375					0.006053395920389448
PRPDRLVNRL	10	Unmodified	_PRPDRLVNRL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.23101806640625	3	412.582556	1234.72584	-0.10095	-4.1649E-05	-0.63903	-0.00026365	-0.73998	-0.0003053	412.5822428546356	33.356	0.60562	33.356	33.011	33.617	0					44	21	3	0	0	0	0.31825	1	6506	6506		9.2438	4.1963	1	208720			33968	405	19854	19855	41376	41376					0.1178639453978576
PRPDRLVNRL	10	Unmodified	_PRPDRLVNRL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2313537597656	3	412.582556	1234.72584	0.20065	8.2785E-05	-0.93066	-0.00038397	-0.73001	-0.00030119	412.5821179391182	33.206	0.53064	33.261	32.891	33.421	0.055309					44	18	3	0	0	0	0.31658	1	6440	6440		12.228	7.1801	1	308250			33969	405	19854	19855	41377	41377					0.1178639453978576
PRPDRLVNRL	10	Unmodified	_PRPDRLVNRL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2314453125	3	412.582556	1234.72584	0.073093	3.0157E-05	-0.45452	-0.00018753	-0.38143	-0.00015737	412.5824104575181	33.21	0.5536	33.265	32.903	33.457	0.054371					45	19	3	0	0	0	0.31825	1	6444	6444		9.2438	4.5279	1	231460			33970	405	19854	19855	41378	41378					0.1178639453978576
PRPEMGSKAKK	11	Unmodified	_PRPEMGSKAKK_					0	0	0		ENST00000592605.1_1_19:1478547-1479204:-|nuORF	ENST00000592605.1_1_19:1478547-1479204:-|nuORF	ENST00000592605.1_1_19:1478547-1479204:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2315979003906	3	410.232535	1227.67578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.95	1	102.97	102.47	103.47	0.016685								0	0	0	0.37111	1	27374	27374		3.5927	0.52041	1				33971	12199	19855	19856	41379	41379					0.07104523819634778
PRPEMGSKAKK	11	Unmodified	_PRPEMGSKAKK_					0	0	0		ENST00000592605.1_1_19:1478547-1479204:-|nuORF	ENST00000592605.1_1_19:1478547-1479204:-|nuORF	ENST00000592605.1_1_19:1478547-1479204:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2314453125	3	410.232535	1227.67578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.16	1	103.16	102.66	103.66	-0.0011139								0	0	0	0.37868	1	27454	27454		1.9275	0.021128	1				33972	12199	19855	19856	41380	41380					0.07104523819634778
PRPGPPGK	8	Unmodified	_PRPGPPGK_					0	0	0		LATS2|p.H691Qfs*36|1|0.26|ENSG00000150457|chr13:20983633-20983634|-/T|frameshift_variant;ENSG00000150457|ENST00000382592|LATS2	LATS2|p.H691Qfs*36|1|0.26|ENSG00000150457|chr13:20983633-20983634|-/T|frameshift_variant	LATS2|p.H691Qfs*36|1|0.26|ENSG00000150457|chr13:20983633-20983634|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.23187255859375	2	403.237587	804.460622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.646	1	29.646	29.146	30.146	0								0	0	0	0.36169	1	5329	5329		9.3474	0.75416	1				33973	4909	19856	19857	41381	41381					0.050569701369909126
PRPGRPRRPRR	11	Unmodified	_PRPGRPRRPRR_					0	0	0		ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.6238708496094	3	467.62386	1399.84975	0.15404	7.2031E-05	-0.066452	-3.1074E-05	0.087585	4.0957E-05	467.623756959893	101.59	1.284	101.58	101.18	102.47	-0.0054703					616	179	5	0	0	0	0.46392	5	27139	27052;27110;27139;27167;27192		2.8433	1.3296	1	3665600			33974	9182	19857	19858	41382;41383;41384;41385;41386	41384					0.16581910150603107
PRPGTPVGWG	10	Unmodified	_PRPGTPVGWG_					0	0	0			REV__ENST00000548759.1_1_12:113495266-113495848:+|nuORF	REV__ENST00000548759.1_1_12:113495266-113495848:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2556762695312	2	512.272158	1022.52976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.805	1	41.805	41.305	42.305	0								0	0	0	0.34209	1	9044	9044		18.146	7.3224	1		+		33975	22190	19858	19859	41387	41387					0.019400093658987316
PRPHGIWDLP	10	Unmodified	_PRPHGIWDLP_					0	0	0		ENST00000361445.8_2_1:11307936-11308095:-|nuORF	ENST00000361445.8_2_1:11307936-11308095:-|nuORF	ENST00000361445.8_2_1:11307936-11308095:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.3195190429688	2	594.31964	1186.62473	0.44393	0.00026384	-0.78206	-0.00046479	-0.33813	-0.00020096	594.3190770114304	24.204	0.82056	24.131	23.791	24.612	-0.072559					55	27	3	0	0	0	0.40106	1	3681	3681		3.2813	0.28607	1	152680			33976	9691	19859	19860	41388	41388					0.03887942837081937
PRPHKPLI	8	Unmodified	_PRPHKPLI_					0	0	0			REV__ENSG00000234776|ENST00000449465|FREY1	REV__ENSG00000234776|ENST00000449465|FREY1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.8214416503906	2	479.303262	956.59197	-0.18013	-8.6338E-05	-3.1645	-0.0015168	-3.3447	-0.0016031	479.3011521441242	12.133	0.11063	12.133	12.04	12.151	0					8	5	2	0	0	0	0.34434	1	16	16		0.79363	0	1	12793	+		33977	19146	19860	19861	41389	41389					0.11193780504891038
PRPHKPLI	8	Unmodified	_PRPHKPLI_					0	0	0			REV__ENSG00000234776|ENST00000449465|FREY1	REV__ENSG00000234776|ENST00000449465|FREY1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.303262	956.59197	-0.022564	-1.0815E-05	-1.4608	-0.00070015	-1.4833	-0.00071096	479.30178497617334	12.116	0.12417	12.019	11.929	12.053	-0.096607	-0.056797	0.0007181	NaN	0.79363	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13264	+		33978	19146	19860	19861							0.11193780504891038
PRPHLQGK	8	Unmodified	_PRPHLQGK_					0	0	0		ENSG00000101144|ENST00000395863|BMP7	ENSG00000101144|ENST00000395863|BMP7	ENSG00000101144|ENST00000395863|BMP7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2639465332031	2	466.774868	931.535184	-0.14269	-6.6606E-05	-0.14421	-6.7315E-05	-0.28691	-0.00013392	466.7747448642939	18.017	0.75104	17.899	17.663	18.414	-0.11739					53	25	3	0	0	0	0.32435	1	1823	1823		23.148	7.3012	1	138920			33979	1666	19861	19862	41390	41390					0.06667732948380944
PRPIPGCPV	9	Unmodified	_PRPIPGCPV_					0	0	0			REV__ENST00000608290.1_1_22:46410950-46411199:+|nuORF	REV__ENST00000608290.1_1_22:46410950-46411199:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7164306640625	2	468.260205	934.505857	-0.12766	-5.9778E-05	-0.6771	-0.00031706	-0.80476	-0.00037684	468.25971839783824	15.388	1.1211	15.278	14.93	16.051	-0.10981					82	38	3	0	0	0	0.25526	1	1196	1196		7.9102	2.1497	1	176980	+		33980	22669	19862	19863	41391	41391					0.03598452607877789
PRPKALNIRF	10	Unmodified	_PRPKALNIRF_					0	0	0			REV__ENSG00000160161|ENST00000291495|CILP2	REV__ENSG00000160161|ENST00000291495|CILP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3728637695312	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.96	1	112.98	112.48	113.48	0.014824								0	0	0	0.38202	1	29395	29395		0.40072	0	1		+		33981	16881	19863	19864	41392	41392					0.132924840334681
PRPKKCRPII	10	Unmodified	_PRPKKCRPII_					0	0	0		ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.5652160644531	3	403.253382	1206.73832	-1.4866	-0.00059947	0.26529	0.00010698	-1.2213	-0.00049249	403.25373624449105	34.779	0.93967	34.779	34.5	35.439	0					69	33	3	0	0	0	0.3179	1	6927	6927		5.7834	5.7834	1	1076100			33982	4928	19864	19865	41393	41393					0.14321714678476383
PRPLFIAH	8	Unmodified	_PRPLFIAH_					0	0	0			REV__nc|ENSG00000182257|Q9NV39|PRR34	REV__nc|ENSG00000182257|Q9NV39|PRR34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.2116394042969	2	475.782162	949.549771	-0.15512	-7.3805E-05	-3.1711	-0.0015088	-3.3262	-0.0015826	475.7801758590591	13.218	0.55581	13.15	12.993	13.549	-0.067496					30	19	2	0	0	0	0.34337	1	384	384		5.2307	0.47466	1	111970	+		33983	23119	19865	19866	41394	41394					0.07297805096504817
PRPLLLWQEM	10	Unmodified	_PRPLLLWQEM_					0	0	0		ENST00000258341.4_1_1:183113986-183114169:+|nuORF	ENST00000258341.4_1_1:183113986-183114169:+|nuORF	ENST00000258341.4_1_1:183113986-183114169:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2057800292969	3	428.237398	1281.69036	-0.2816	-0.00012059	1.899	0.00081321	1.6174	0.00069262	428.2383627184185	15.264	0.88581	15.154	14.93	15.816	-0.10981					72	30	4	0	0	0	0.32167	1	1166	1166		0.62683	0.12087	1	180040			33984	8944	19866	19867	41395	41395					0.06078595967733236
PRPLMEPLVPT	11	Unmodified	_PRPLMEPLVPT_					0	0	0			REV__ENST00000473798.1_1_1:762401-762845:-|nuORF	REV__ENST00000473798.1_1_1:762401-762845:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.36767578125	2	625.352291	1248.69003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.912	1	90.912	90.412	91.412	0								0	0	0	0.36137	1	24118	24118		5.7319	2.1354	1		+		33985	21385	19867	19868	41396	41396					0.07563176247890624
PRPLMEPLVPT	11	Unmodified	_PRPLMEPLVPT_					0	0	0			REV__ENST00000473798.1_1_1:762401-762845:-|nuORF	REV__ENST00000473798.1_1_1:762401-762845:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.36572265625	2	625.352291	1248.69003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.967	1	90.967	90.467	91.467	0								0	0	0	0.36137	1	24136	24136		5.7319	0.43497	1		+		33986	21385	19867	19868	41397	41397					0.07563176247890624
PRPPPSAAL	9	Unmodified	_PRPPPSAAL_					0	0	0		ENST00000456950.6_1_17:40821512-40828020:-|nuORF;nc|ENSG00000068137|Q7Z736-3|PLEKHH3;nc|ENSG00000068137|Q7Z736-2|PLEKHH3;ENST00000591490.5_1_17:40821740-40828722:-|nuORF;ENSG00000068137|ENST00000591022|PLEKHH3	ENST00000456950.6_1_17:40821512-40828020:-|nuORF	ENST00000456950.6_1_17:40821512-40828020:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.743896484375	2	453.263802	904.513051	-0.21372	-9.6873E-05	-0.87129	-0.00039492	-1.085	-0.0004918	453.26300525887524	28.052	0.31096	28.052	27.87	28.181	0					16	10	2	0	0	0	0.24848	1	4836	4836		13.906	1.3745	1	68985			33987	878	19868	19869	41398	41398					0.05697508479943281
PRPPRLRTTT	10	Unmodified	_PRPPRLRTTT_					0	0	0		ENST00000579692.1_1_17:29335545-29335704:+|nuORF	ENST00000579692.1_1_17:29335545-29335704:+|nuORF	ENST00000579692.1_1_17:29335545-29335704:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8567504882812	2	597.856921	1193.69929	0.27891	0.00016675	-0.48643	-0.00029082	-0.20752	-0.00012407	597.8563009121622	101.52	0.35124	101.55	101.42	101.77	0.027206					60	45	2	0	0	0	0.32088	1	27080	27080		2.7352	0.89096	1	133640			33988	12070	19869	19870	41399	41399					0.11018705648439209
PRPQPEQG	8	Unmodified	_PRPQPEQG_					0	0	0			REV__ENSG00000156466|ENST00000287020|GDF6	REV__ENSG00000156466|ENST00000287020|GDF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.52325439453125	2	454.732866	907.451179	-0.16481	-7.4943E-05	-0.24206	-0.00011007	-0.40687	-0.00018502	454.7329074891493	14.551	0.27728	14.551	14.423	14.701	0					12	9	2	0	0	0	0.34414	1	785	785		2.0598	0	1	13846	+		33989	16747	19870	19871	41400	41400					-0.006248429391916943
PRPRLKWLF	9	Unmodified	_PRPRLKWLF_					0	0	0			REV__ENST00000585741.1_1_19:3573729-3573972:+|nuORF	REV__ENST00000585741.1_1_19:3573729-3573972:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8717041015625	2	606.871843	1211.72913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.656	1	88.656	88.156	89.156	0								0	0	0	0.26704	1	23429	23429		0.6015	0	1		+		33990	21349	19871	19872	41401	41401					0.13173689384439058
PRPRLKWLF	9	Unmodified	_PRPRLKWLF_					0	0	0			REV__ENST00000585741.1_1_19:3573729-3573972:+|nuORF	REV__ENST00000585741.1_1_19:3573729-3573972:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3695678710938	2	606.871843	1211.72913	0.3102	0.00018825	-1.4144	-0.00085834	-1.1042	-0.00067009	606.871259747043	97.419	0.12437	97.49	97.403	97.527	0.070465					16	11	2	0	0	0	0.26251	1	26077	26077		0.6015	0	1	69811	+		33991	21349	19871	19872	41402	41402					0.13173689384439058
PRPRLKWLF	9	Unmodified	_PRPRLKWLF_					0	0	0			REV__ENST00000585741.1_1_19:3573729-3573972:+|nuORF	REV__ENST00000585741.1_1_19:3573729-3573972:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3698120117188	2	606.871843	1211.72913	0.54627	0.00033152	-1.1407	-0.00069226	-0.59443	-0.00036074	606.871356571049	88.355	0.55333	88.444	88.171	88.724	0.089195					29	23	2	0	0	0	0.26251	1	23373	23373		0.6015	0	1	97280	+		33992	21349	19871	19872	41403	41403					0.13173689384439058
PRPRLKWLF	9	Unmodified	_PRPRLKWLF_					0	0	0			REV__ENST00000585741.1_1_19:3573729-3573972:+|nuORF	REV__ENST00000585741.1_1_19:3573729-3573972:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	606.871843	1211.72913	0.1132	6.8698E-05	-1.7282	-0.0010488	-1.615	-0.00098009	606.8718040100104	97.859	0.031036	97.859	97.843	97.874	0	0.1845	-0.00035156	NaN	0.6015	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26691	+		33993	21349	19871	19872							0.13173689384439058
PRPRNQLGEF	10	Unmodified	_PRPRNQLGEF_					0	0	0			REV__ENSG00000074590|ENST00000261402|NUAK1	REV__ENSG00000074590|ENST00000261402|NUAK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.5834655761719	3	405.219395	1212.63635	-0.27774	-0.00011254	-2.5973	-0.0010525	-2.875	-0.001165	405.21787709546373	19.34	0.92695	19.34	18.978	19.905	0					52	32	2	0	0	0	0.3213	1	2325	2325		1.9064	0	1	37870	+		33994	13790	19872	19873	41404	41404					0.03854139860413852
PRPRQLHL	8	Unmodified	_PRPRQLHL_					0	0	0		ENST00000602529.1_1_1:228463255-228463756:-|nuORF	ENST00000602529.1_1_1:228463255-228463756:-|nuORF	ENST00000602529.1_1_1:228463255-228463756:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2823486328125	2	508.809242	1015.60393	0.081179	4.1305E-05	-0.36499	-0.00018571	-0.28382	-0.00014441	508.80912018343207	23.098	0.74981	23.011	22.736	23.486	-0.087608					52	26	3	0	0	0	0.33245	1	3317	3317		19.439	0	1	152350			33995	12268	19873	19874	41405	41405					0.09675397248076933
PRPRRRRRRV	10	Unmodified	_PRPRRRRRRV_					0	0	0			REV__ENST00000549122.5_1_12:93965649-93966593:+|nuORF	REV__ENST00000549122.5_1_12:93965649-93966593:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2583312988281	3	468.971371	1403.89228	0.0056294	2.64E-06	-0.14627	-6.8597E-05	-0.14064	-6.5957E-05	468.97121262723107	43.663	1.129	43.663	43.333	44.462	0					125	41	4	0	0	0	0.32174	1	9827	9827		0.15932	0.15932	1	2816200	+		33996	22194	19874	19875	41406	41406					0.20649305278834618
PRPSRKKRRRR	11	Unmodified	_PRPSRKKRRRR_					0	0	0		ENST00000296490.7_1_3:52312489-52312597:-|nuORF	ENST00000296490.7_1_3:52312489-52312597:-|nuORF	ENST00000296490.7_1_3:52312489-52312597:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.79632568359375	3	498.322181	1491.94471	0.38021	0.00018947	-0.43782	-0.00021817	-0.057606	-2.8706E-05	498.3217123144484	42.838	1.0619	42.923	42.487	43.549	0.085197					98	38	4	0	0	0	0.33349	1	9472	9472		0.32927	0.24592	1	816480			33997	9184	19875	19876	41407	41407					0.21841843621791668
PRPVLRAL	8	Unmodified	_PRPVLRAL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.3032531738281	2	461.303262	920.59197	-0.29847	-0.00013768	0.30441	0.00014042	0.0059419	2.741E-06	461.3033910200994	39.582	0.59248	39.582	39.321	39.914	0					36	21	2	0	0	0	0.20518	1	8373	8373		42.095	6.0504	1	403280			33998	1364	19876	19877	41408	41408					0.12849780504882347
PRPVLRAL	8	Unmodified	_PRPVLRAL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	461.303262	920.59197	-0.021652	-9.988E-06	0.10224	4.7162E-05	0.080585	3.7174E-05	461.30330701064685	39.468	0.49654	39.561	39.307	39.803	0.092674	0.0075964	-6.2253E-05	NaN	42.095	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331150			33999	1364	19876	19877							0.12849780504882347
PRPVLRAL	8	Unmodified	_PRPVLRAL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	461.303262	920.59197	0.18428	8.5007E-05	-0.06641	-3.0635E-05	0.11787	5.4372E-05	461.3031489177372	39.417	0.55157	39.516	39.236	39.788	0.099407	-0.036984	-0.00021785	NaN	42.095	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366230			34000	1364	19876	19877							0.12849780504882347
PRQAGWSSQAR	11	Unmodified	_PRQAGWSSQAR_					0	0	0		ENSG00000156858|ENST00000300835|PRR14;ENST00000565410.5_1_16:30662432-30664164:+|nuORF	ENSG00000156858|ENST00000300835|PRR14	ENSG00000156858|ENST00000300835|PRR14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5592956542969	3	415.214532	1242.62177	-0.11252	-4.6718E-05	0.28626	0.00011886	0.17374	7.2141E-05	415.54902673312137	13.856	0.30489	13.751	13.568	13.873	-0.10466					22	10	3	0	0	0	0.46655	1	563	563		1.0136	0.1492	1	29684			34001	5259	19877	19878	41409	41409					0.010160677122712514
PRQAGWSSQAR	11	Unmodified	_PRQAGWSSQAR_					0	0	0		ENSG00000156858|ENST00000300835|PRR14;ENST00000565410.5_1_16:30662432-30664164:+|nuORF	ENSG00000156858|ENST00000300835|PRR14	ENSG00000156858|ENST00000300835|PRR14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.5592956542969	3	415.214532	1242.62177	-0.13617	-5.654E-05	0.48098	0.00019971	0.34481	0.00014317	415.21471044086553	13.85	0.28701	13.784	13.602	13.889	-0.066068					14	9	2	0	0	0	0.45367	1	555	555		1.9275	1.002	1	31776			34002	5259	19877	19878	41410	41410					0.010160677122712514
PRQAPLLL	8	Unmodified	_PRQAPLLL_					0	0	0			REV__ENST00000570016.5_1_16:29873914-29874308:-|nuORF	REV__ENST00000570016.5_1_16:29873914-29874308:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2900085449219	2	454.28982	906.565087	0.17048	7.7446E-05	0.26833	0.0001219	0.4388	0.00019934	454.28973875178275	51.472	0.52055	51.519	51.375	51.896	0.046574					43	18	3	0	0	0	0.30517	1	12088	12088		30.225	1.738	1	1128300	+		34003	19421	19878	19879	41411	41411					0.10806671893703879
PRQAPLLLL	9	Unmodified	_PRQAPLLLL_					0	0	0			REV__ENST00000570016.5_1_16:29873914-29874308:-|nuORF	REV__ENST00000570016.5_1_16:29873914-29874308:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8319091796875	2	510.831852	1019.64915	0.53219	0.00027186	-0.1657	-8.4646E-05	0.36649	0.00018721	510.8317007014639	65.855	1.1186	65.944	65.38	66.499	0.088882					63	30	3	0	0	0	0.18803	1	16487	16487		25.399	1.3787	1	1253100	+		34004	19421	19879	19880	41412	41412					0.14011202990604943
PRQASKPK	8	Unmodified	_PRQASKPK_					0	0	0		ENSG00000185112|ENST00000329759|FAM43A	ENSG00000185112|ENST00000329759|FAM43A	ENSG00000185112|ENST00000329759|FAM43A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2747802734375	2	456.274701	910.534849	0.054653	2.4937E-05	-0.34479	-0.00015732	-0.29013	-0.00013238	456.274614347875	17.729	0.32856	17.729	17.507	17.835	0					21	10	3	0	0	0	0.45307	1	1733	1733		4.756	0.81161	1	34204			34005	7508	19880	19881	41413	41413					0.07600313228510913
PRQCSTLE	8	Unmodified	_PRQCSTLE_					0	0	0			REV__ENST00000452357.6_1_12:113355571-113355628:+|nuORF	REV__ENST00000452357.6_1_12:113355571-113355628:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2264404296875	2	467.226559	932.438566	-0.17766	-8.3009E-05	0.59759	0.00027921	0.41993	0.0001962	467.226722255279	18.845	0.56235	18.845	18.563	19.125	0					33	19	2	0	0	0	0.34408	1	2111	2111		0.6015	0.6015	1	59863	+		34006	21125	19881	19882	41414	41414					-0.030356223937246796
PRQFIQVHAM	10	Unmodified	_PRQFIQVHAM_					0	0	0			REV__ENSG00000100393|ENST00000263253|EP300	REV__ENSG00000100393|ENST00000263253|EP300	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.55242919921875	3	409.553609	1225.639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.255	1	22.206	21.706	22.706	-0.049377								0	0	0	0.37319	1	3088	3088		5.0475	0.85802	1		+		34007	14191	19882	19883	41415	41415					0.03520271993716051
PRQGRPLECGK	11	Unmodified	_PRQGRPLECGK_					0	0	0			REV__nc|ENSG00000183072|P52952-2|NKX2-5	REV__nc|ENSG00000183072|P52952-2|NKX2-5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.90863037109375	3	414.224151	1239.65062	0.032988	1.3665E-05	-2.9608	-0.0012264	-2.9278	-0.0012128	414.22297757260446	24.633	0.51884	24.602	24.314	24.833	-0.031408					29	17	2	0	0	0	0.33149	1	3725	3725		1.1098	0	1	90440	+		34008	23128	19883	19884	41416	41416					0.04038469017018542
PRQHQHGVSPT	11	Unmodified	_PRQHQHGVSPT_					0	0	0			REV__L1PA6_dup2662|chr6:160208729-160214880:-|1.2665007636170862|0.0221250906454286|5.84|510.0|119|3|sense	REV__L1PA6_dup2662|chr6:160208729-160214880:-|1.2665007636170862|0.0221250906454286|5.84|510.0|119|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.55926513671875	3	415.214532	1242.62177	-0.35611	-0.00014786	0.093653	3.8886E-05	-0.26246	-0.00010898	415.2146979204814	13.739	0.33516	13.739	13.537	13.872	0					16	11	2	0	0	0	0.46475	1	532	532		1.1098	0.096179	1	28199	+		34009	22814	19884	19885	41417	41417					0.010160677122712514
PRQIKRLQP	9	Unmodified	_PRQIKRLQP_					0	0	0			REV__ENST00000344120.4_1_5:141693592-141693661:-|nuORF	REV__ENST00000344120.4_1_5:141693592-141693661:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.356689453125	2	568.356557	1134.69856	0.31862	0.00018109	0.11449	6.5069E-05	0.43311	0.00024616	568.3565378393123	23.95	0.50712	23.878	23.672	24.179	-0.072559					30	16	2	0	0	0	0.33018	1	3615	3615		4.3292	0	1	73753	+		34010	20137	19885	19886	41418	41418					0.1365991099942221
PRQIKRLQP	9	Unmodified	_PRQIKRLQP_					0	0	0			REV__ENST00000344120.4_1_5:141693592-141693661:-|nuORF	REV__ENST00000344120.4_1_5:141693592-141693661:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.3566284179688	2	568.356557	1134.69856	0.3074	0.00017471	0.16758	9.5244E-05	0.47498	0.00026996	568.3565059086703	24.006	0.54122	23.967	23.681	24.222	-0.038927					27	18	2	0	0	0	0.33018	1	3612	3612		4.3292	0	1	88384	+		34011	20137	19885	19886	41419	41419					0.1365991099942221
PRQIKRLQP	9	Unmodified	_PRQIKRLQP_					0	0	0			REV__ENST00000344120.4_1_5:141693592-141693661:-|nuORF	REV__ENST00000344120.4_1_5:141693592-141693661:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	568.356557	1134.69856	0.11408	6.4836E-05	0.58161	0.00033056	0.69569	0.0003954	568.3566315103295	23.805	0.51771	23.805	23.616	24.134	0	-0.078232	0.00040733	NaN	4.3292	27	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73659	+		34012	20137	19885	19886							0.1365991099942221
PRQIKRLQP	9	Unmodified	_PRQIKRLQP_					0	0	0			REV__ENST00000344120.4_1_5:141693592-141693661:-|nuORF	REV__ENST00000344120.4_1_5:141693592-141693661:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	568.356557	1134.69856	0.31862	0.00018109	0.11449	6.5069E-05	0.43311	0.00024616	568.3565378393123	23.95	0.50712	23.878	23.672	24.179	-0.072559	-0.0057648	-0.00012366	NaN	4.3292	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73753	+		34013	20137	19885	19886							0.1365991099942221
PRQKKLVWSP	10	Unmodified	_PRQKKLVWSP_					0	0	0			REV__ENST00000249364.8_1_7:128388716-128388830:+|nuORF	REV__ENST00000249364.8_1_7:128388716-128388830:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8696899414062	2	619.87204	1237.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.55	1	101.55	101.05	102.05	0								0	0	0	0.37664	1	27072	27072		3.5965	1.9439	1		+		34014	19515	19886	19887	41420	41420					0.1201706431365892
PRQKKLVWSP	10	Unmodified	_PRQKKLVWSP_					0	0	0			REV__ENST00000249364.8_1_7:128388716-128388830:+|nuORF	REV__ENST00000249364.8_1_7:128388716-128388830:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8699340820312	2	619.87204	1237.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.16	1	100.2	99.696	100.7	0.038994								0	0	0	0.37044	1	26773	26773		6.2058	2.9245	1		+		34015	19515	19886	19887	41421	41421					0.1201706431365892
PRQKKLVWSP	10	Unmodified	_PRQKKLVWSP_					0	0	0			REV__ENST00000249364.8_1_7:128388716-128388830:+|nuORF	REV__ENST00000249364.8_1_7:128388716-128388830:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.869384765625	2	619.87204	1237.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.957	1	98.95	98.45	99.45	-0.006897								0	0	0	0.37664	1	26513	26513		3.5965	0.60125	1		+		34016	19515	19886	19887	41422	41422					0.1201706431365892
PRQKKLVWSP	10	Unmodified	_PRQKKLVWSP_					0	0	0			REV__ENST00000249364.8_1_7:128388716-128388830:+|nuORF	REV__ENST00000249364.8_1_7:128388716-128388830:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8696899414062	2	619.87204	1237.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.24	1	100.23	99.729	100.73	-0.006897								0	0	0	0.37664	1	26823	26823		3.5965	0.31518	1		+		34017	19515	19886	19887	41423	41423					0.1201706431365892
PRQKKLVWSP	10	Unmodified	_PRQKKLVWSP_					0	0	0			REV__ENST00000249364.8_1_7:128388716-128388830:+|nuORF	REV__ENST00000249364.8_1_7:128388716-128388830:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8699340820312	2	619.87204	1237.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.18	1	101.18	100.68	101.68	-0.0054703								0	0	0	0.37664	1	27021	27021		3.5965	0.60125	1		+		34018	19515	19886	19887	41424	41424					0.1201706431365892
PRQKTSLK	8	Unmodified	_PRQKTSLK_					0	0	0		nc|ENSG00000163218|Q96LB8-2|PGLYRP4;ENSG00000163218|ENST00000359650|PGLYRP4	nc|ENSG00000163218|Q96LB8-2|PGLYRP4	nc|ENSG00000163218|Q96LB8-2|PGLYRP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.27740478515625	2	479.295633	956.576714	0.0080919	3.8784E-06	0.047264	2.2653E-05	0.055356	2.6532E-05	479.2955606266746	23.574	0.4669	23.574	23.362	23.829	0					26	15	2	0	0	0	0.34367	1	3430	3430		4.3292	1.7518	1	144950			34019	5659	19887	19888	41425	41425					0.09668868917049167
PRQLKVPPY	9	Unmodified	_PRQLKVPPY_					0	0	0		ENSG00000155760|ENST00000286201|FZD7	ENSG00000155760|ENST00000286201|FZD7	ENSG00000155760|ENST00000286201|FZD7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.312744140625	2	549.326934	1096.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.629	1	16.515	16.015	17.015	-0.11434								0	0	0	0.26334	1	1387	1387		2.0598	0.40713	1				34020	5194	19888	19889	41426	41426					0.0948601498523658
PRQLLQRY	8	Unmodified	_PRQLLQRY_					0	0	0		ENSG00000108239|ENST00000225235|TBC1D12	ENSG00000108239|ENST00000225235|TBC1D12	ENSG00000108239|ENST00000225235|TBC1D12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2957153320312	2	537.314358	1072.61416	0.4484	0.00024093	-0.64967	-0.00034908	-0.20127	-0.00010815	537.3138578255493	30.128	0.59005	30.156	29.933	30.523	0.027948					34	20	2	0	0	0	0.34337	1	5580	5580		5.2307	1.6342	1	144410			34021	2169	19889	19890	41427	41427					0.08075960182668496
PRQLRLQRG	9	Unmodified	_PRQLRLQRG_					0	0	0			REV__nc|ENSG00000198026|Q9H4Z2-2|ZNF335	REV__nc|ENSG00000198026|Q9H4Z2-2|ZNF335	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.343505859375	2	562.343981	1122.67341	0.43296	0.00024347	-0.58577	-0.0003294	-0.15281	-8.593E-05	562.3435440038767	82.816	0.78503	82.816	82.338	83.123	0					70	29	3	0	0	0	0.34681	1	21646	21646		1.8442	0	1	1066500	+		34022	18789	19890	19891	41428	41428					0.11697856196815337
PRQPLFRCRFL	11	Unmodified	_PRQPLFRCRFL_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.247802734375	3	478.271324	1431.79214	0.13665	6.5354E-05	2.0331	0.00097236	2.1697	0.0010377	478.272204073195	33.11	0.2819	33.165	33.002	33.284	0.055309					12	9	2	0	0	0	0.33287	1	6390	6390		2.8433	0.4085	1	102580	+		34023	13399	19891	19892	41429	41429					0.09351887110187818
PRQPPMSL	8	Oxidation (M)	_PRQPPM(Oxidation (M))SL_		PRQPPM(1)SL		PRQPPM(44)SL	0	0	1		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7489318847656	2	471.247295	940.480036	-0.05837	-2.7507E-05	-2.6546	-0.001251	-2.713	-0.0012785	471.2474826655727	25.906	0.62553	25.868	25.609	26.235	-0.03867					49	21	4	0	0	0	0.1951	1	4199	4199		43.858	16.975	1	238640			34024	7014	19892	19893	41430	41430		789			0.00741558365587025
PRQPPMSL	8	Oxidation (M)	_PRQPPM(Oxidation (M))SL_		PRQPPM(1)SL		PRQPPM(44)SL	0	0	1		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2476806640625	2	471.247295	940.480036	0.12448	5.8661E-05	-3.3487	-0.0015781	-3.2242	-0.0015194	471.24726857873094	25.986	0.63408	25.964	25.747	26.381	-0.022236					56	22	4	0	0	0	0.1951	1	4198	4198		43.858	16.975	1	255200			34025	7014	19892	19893	41431	41431		789			0.00741558365587025
PRQQPSGWRP	10	Unmodified	_PRQQPSGWRP_					0	0	0			REV__nc|ENSG00000033327|Q9UQC2-2|GAB2	REV__nc|ENSG00000033327|Q9UQC2-2|GAB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.5645751953125	3	403.547623	1207.62104	-1.3746	-0.00055471	0.07239	2.9213E-05	-1.3022	-0.00052549	403.88187336397385	34.637	0.38528	34.712	34.353	34.739	0.075306					22	13	2	0	0	0	0.31867	1	6851	6851		7.9454	2.8979	1	146800	+		34026	13503	19893	19894	41432	41432					0.025532730632448875
PRQRLQLY	8	Unmodified	_PRQRLQLY_					0	0	0		ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	ENSG00000174851|ENST00000376901|YIF1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.29638671875	2	537.314358	1072.61416	0.5834	0.00031347	-0.67235	-0.00036126	-0.088948	-4.7793E-05	537.3139319909923	30.109	0.52729	30.109	29.945	30.473	0					37	18	3	0	0	0	0.42758	1	5531	5531		13.508	3.434	1	161890			34027	6823	19894	19895	41433	41433					0.08075960182668496
PRQTNVAV	8	Unmodified	_PRQTNVAV_					0	0	0			REV__ENSG00000153294|ENST00000283303|ADGRF4	REV__ENSG00000153294|ENST00000283303|ADGRF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.75115966796875	2	442.751059	883.487565	0.096855	4.2882E-05	0.13675	6.0548E-05	0.23361	0.00010343	442.751075272553	19.557	0.86492	19.441	19.116	19.981	-0.11592					60	29	3	0	0	0	0.42371	1	2276	2276		14.838	0.43289	1	276470	+		34028	16623	19895	19896	41434	41434					0.04116033957518539
PRQTPSQLLPK	11	Unmodified	_PRQTPSQLLPK_					0	0	0			REV__ENST00000373615.8_2_9:126774056-126774209:+|nuORF	REV__ENST00000373615.8_2_9:126774056-126774209:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.564208984375	3	422.250583	1263.72992	-0.19492	-8.2305E-05	-1.1446	-0.00048331	-1.3395	-0.00056561	422.2505396265161	23.21	1.1173	23.122	22.54	23.657	-0.087608					57	39	3	0	0	0	0.33336	1	3499	3499		1.1098	0.48293	1	217640	+		34029	20444	19896	19897	41435	41435					0.10860439242833309
PRQTRLTKVT	10	Unmodified	_PRQTRLTKVT_					0	0	0			REV__ENSG00000142949|ENST00000359947|PTPRF	REV__ENSG00000142949|ENST00000359947|PTPRF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	400.5801086425781	3	400.578811	1198.7146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.01	1	103.01	102.51	103.51	-0.0011139								0	0	0	0.37807	1	27414	27414		1.4551	0.34536	1		+		34030	16140	19897	19898	41436	41436					0.12319572445630911
PRQTRLTKVT	10	Unmodified	_PRQTRLTKVT_					0	0	0			REV__ENSG00000142949|ENST00000359947|PTPRF	REV__ENSG00000142949|ENST00000359947|PTPRF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	400.58001708984375	3	400.578811	1198.7146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.01	1	104.01	103.51	104.51	-0.0011139								0	0	0	0.37807	1	27650	27650		1.4551	0.34536	1		+		34031	16140	19897	19898	41437	41437					0.12319572445630911
PRQVDTKGLLR	11	Unmodified	_PRQVDTKGLLR_					0	0	0			REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.3841552734375	2	641.883136	1281.75172	0.34705	0.00022277	-0.91602	-0.00058798	-0.56897	-0.00036521	641.8824138316368	96.024	0.51697	96.101	95.922	96.439	0.077415					72	46	2	0	0	0	0.47649	1	25683	25683		1.1933	0.12188	1	137620	+		34032	17991	19898	19899	41438	41438					0.12211243991418996
PRRAEQRRLLL	11	Unmodified	_PRRAEQRRLLL_					0	0	0			REV__ENSG00000149609|ENST00000375222|C20orf144	REV__ENSG00000149609|ENST00000375222|C20orf144	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.27685546875	3	469.960026	1406.85825	0.15043	7.0697E-05	-0.44004	-0.0002068	-0.28961	-0.00013611	469.9598587094534	30.168	0.22041	30.168	30.113	30.333	0					9	7	2	0	0	0	0.3333	1	5532	5532		1.3296	0.87513	1	67176	+		34033	16478	19899	19900	41439	41439					0.17109419276607696
PRRAEQRRLLL	11	Unmodified	_PRRAEQRRLLL_					0	0	0			REV__ENSG00000149609|ENST00000375222|C20orf144	REV__ENSG00000149609|ENST00000375222|C20orf144	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	469.960026	1406.85825	-0.095904	-4.5071E-05	-0.41195	-0.0001936	-0.50785	-0.00023867	469.95988482927527	30.17	0.22587	30.197	30.083	30.309	0.027157	0.014215	1.0598E-05	NaN	1.3296	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110940	+		34034	16478	19899	19900							0.17109419276607696
PRRASPVT	8	Unmodified	_PRRASPVT_					0	0	0			REV__ENSG00000149016|ENST00000476907|TUT1	REV__ENSG00000149016|ENST00000476907|TUT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2586975097656	2	442.259051	882.503549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.298	1	20.246	19.746	20.746	-0.05291								0	0	0	0.24099	1	2494	2494		37.974	3.5723	1		+		34035	16447	19900	19901	41440	41440					0.05759740194423557
PRRAYKAEM	9	Unmodified	_PRRAYKAEM_					0	0	0		ENST00000506510.6_1_5:59817897-59817942:-|nuORF	ENST00000506510.6_1_5:59817897-59817942:-|nuORF	ENST00000506510.6_1_5:59817897-59817942:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.658203125	2	561.29785	1120.58115	0.22759	0.00012775	-0.52787	-0.00029629	-0.30028	-0.00016855	561.2973624936338	28.779	0.32473	28.779	28.548	28.873	0					15	10	2	0	0	0	0.25622	1	5073	5073		7.2892	0	1	52142			34036	11328	19901	19902	41441	41441					0.025680100682848206
PRRDELVV	8	Unmodified	_PRRDELVV_					0	0	0			REV__ENST00000313807.4_1_15:44829006-44829054:-|nuORF	REV__ENST00000313807.4_1_15:44829006-44829054:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2856750488281	2	492.285266	982.555979	0.32765	0.0001613	0.6453	0.00031767	0.97295	0.00047897	492.2854957151299	33.169	0.55467	33.225	32.973	33.527	0.055309					32	19	2	0	0	0	0.43302	1	6416	6416		11.64	1.5664	1	194600	+		34037	19921	19902	19903	41442	41442					0.06400278537375925
PRRDGLEV	8	Unmodified	_PRRDGLEV_					0	0	0		nc|ENSG00000135622|O95754-2|SEMA4F;ENSG00000135622|ENST00000357877|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.7878112792969	2	471.261791	940.509028	0.022666	1.0682E-05	-0.087997	-4.147E-05	-0.065331	-3.0788E-05	471.2617727675892	17.647	0.53094	17.647	17.368	17.898	0					28	17	2	0	0	0	0.34313	1	1656	1656		6.7232	1.4925	1	47673			34038	3886	19903	19904	41443	41443					0.03639418986244891
PRRESDPHL	9	Unmodified	_PRRESDPHL_					0	0	0		ENST00000368190.7_1_1:157516812-157522183:-|nuORF	ENST00000368190.7_1_1:157516812-157522183:-|nuORF	ENST00000368190.7_1_1:157516812-157522183:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3203125	2	553.788704	1105.56285	-0.0076758	-4.2508E-06	0.52503	0.00029076	0.51735	0.0002865	553.7892192048675	13.523	0.38463	13.424	13.189	13.573	-0.09929					23	13	3	0	0	0	0.25066	1	444	444		11.64	0	1	83010			34039	9754	19904	19905	41444	41444					0.014295914179456304
PRRFRFWL	8	Unmodified	_PRRFRFWL_					0	0	0		ENST00000296581.10_2_4:147096871-147096937:+|nuORF	ENST00000296581.10_2_4:147096871-147096937:+|nuORF	ENST00000296581.10_2_4:147096871-147096937:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.7398071289062	2	589.34071	1176.66687	0.030276	1.7843E-05	1.7758	0.0010465	1.8061	0.0010644	589.3421461822477	12.879	0.54631	12.78	12.407	12.953	-0.099291					22	18	2	0	0	0	0.34437	1	265	265		0.69038	0.16561	1	22725			34040	9188	19905	19906	41445	41445					0.08559963036123008
PRRFRFWL	8	Unmodified	_PRRFRFWL_					0	0	0		ENST00000296581.10_2_4:147096871-147096937:+|nuORF	ENST00000296581.10_2_4:147096871-147096937:+|nuORF	ENST00000296581.10_2_4:147096871-147096937:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	589.34071	1176.66687	0.034565	2.037E-05	-1.2411	-0.00073142	-1.2065	-0.00071105	589.3398445031311	12.821	0.20101	12.821	12.724	12.925	0	0.020419	-0.00067563	NaN	0.69038	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17165			34041	9188	19905	19906							0.08559963036123008
PRRGDVKL	8	Unmodified	_PRRGDVKL_					0	0	0		ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.8003845214844	2	470.787976	939.561398	-0.022721	-1.0697E-05	0.32643	0.00015368	0.3037	0.00014298	470.7880210565627	18.159	0.30494	18.1	17.98	18.285	-0.058174					17	10	2	0	0	0	0.34337	1	1822	1822		5.2307	0	1	28103			34042	467	19906	19907	41446	41446					0.08920002119862147
PRRGMHRV	8	Unmodified	_PRRGMHRV_					0	0	0		ENST00000262803.9_1_19:18978594-18978843:+|nuORF	ENST00000262803.9_1_19:18978594-18978843:+|nuORF	ENST00000262803.9_1_19:18978594-18978843:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2963562011719	2	504.785244	1007.55594	-0.0081386	-4.1083E-06	3.1588	0.0015945	3.1506	0.0015904	505.2877428640737	13.686	0.22681	13.686	13.567	13.794	0					11	7	2	0	0	0	0.34408	1	500	500		2.3027	0.4585	1	10899			34043	8990	19907	19908	41447	41447					0.052460000563883114
PRRGPALLH	9	Unmodified	_PRRGPALLH_					0	0	0		ENSG00000225830|ENST00000355832|ERCC6;nc|ENSG00000225830|P0DP91|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	ENSG00000225830|ENST00000355832|ERCC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.28240966796875	2	508.809242	1015.60393	0.2142	0.00010899	-0.51295	-0.00026099	-0.29875	-0.00015201	508.8089222597536	23.154	0.62314	23.109	22.847	23.47	-0.044867					49	22	3	0	0	0	0.24311	1	3367	3367		16.942	1.0951	1	160500			34044	8449	19908	19909	41448	41448					0.09675397248076933
PRRGPPKDKKL	11	Unmodified	_PRRGPPKDKKL_					0	0	0		ENSG00000160469|ENST00000309383|BRSK1;nc|ENSG00000160469|Q8TDC3-2|BRSK1	ENSG00000160469|ENST00000309383|BRSK1	ENSG00000160469|ENST00000309383|BRSK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8866271972656	3	431.270089	1290.78844	-0.34153	-0.00014729	-0.55361	-0.00023875	-0.89513	-0.00038604	431.6041235687185	15.408	0.30122	15.344	15.216	15.517	-0.064414					20	9	3	0	0	0	0.33303	1	1003	1003		2.4348	0	1	49936			34045	5466	19909	19910	41449	41449					0.1546754060798321
PRRGPPKDKKL	11	Unmodified	_PRRGPPKDKKL_					0	0	0		ENSG00000160469|ENST00000309383|BRSK1;nc|ENSG00000160469|Q8TDC3-2|BRSK1	ENSG00000160469|ENST00000309383|BRSK1	ENSG00000160469|ENST00000309383|BRSK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	431.270089	1290.78844	-0.25534	-0.00011012	-0.45078	-0.00019441	-0.70612	-0.00030453	431.26998033321996	15.477	0.3664	15.367	15.151	15.517	-0.10982	0.011871	7.8634E-05	NaN	2.4348	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44875			34046	5466	19909	19910							0.1546754060798321
PRRHGLLGPPL	11	Unmodified	_PRRHGLLGPPL_					0	0	0			REV__ENST00000381440.4_1_16:19125712-19125829:+|nuORF	REV__ENST00000381440.4_1_16:19125712-19125829:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.370361328125	2	606.869831	1211.72511	0.26971	0.00016368	0.44913	0.00027257	0.71885	0.00043625	606.8722558342861	117.63	0.056686	117.65	117.64	117.69	0.023476					9	6	2	0	0	0	0.33351	1	30486	30486		0	0	1	11922	+		34047	20564	19910	19911	41450	41450					0.12771599890766083
PRRHGPLPSV	10	Unmodified	_PRRHGPLPSV_					0	0	0			REV__ENST00000317447.8_1_16:89220769-89220895:+|nuORF	REV__ENST00000317447.8_1_16:89220769-89220895:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3250732421875	2	558.325257	1114.63596	0.39281	0.00021932	-0.37666	-0.0002103	0.016156	9.0205E-06	558.3247174112139	89.808	0.96431	89.899	89.483	90.448	0.090569					160	73	3	0	0	0	0.38515	1	23782	23782		6.2058	0	1	400880	+		34048	19943	19911	19912	41451	41451					0.08322764931222082
PRRKVFKR	8	Unmodified	_PRRKVFKR_					0	0	0		ENST00000305135.9_1_3:183529275-183529383:+|nuORF	ENST00000305135.9_1_3:183529275-183529383:+|nuORF	ENST00000305135.9_1_3:183529275-183529383:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.6944580078125	2	543.853984	1085.69342	0.38827	0.00021116	-1.4049	-0.00076407	-1.0167	-0.00055291	543.8531817293532	22.31	0.39594	22.261	22.038	22.434	-0.049377					17	13	2	0	0	0	0.34437	1	3052	3052		0.69038	0.088878	1	35443			34049	9263	19912	19913	41452	41452					0.1539965192746422
PRRLLLTGP	9	Unmodified	_PRRLLLTGP_					0	0	0		ENSG00000141449|ENST00000424526|GREB1L;nc|ENSG00000141449|Q9C091-3|GREB1L;ENST00000578955.1_1_18:19057140-19088617:+|nuORF	ENSG00000141449|ENST00000424526|GREB1L	ENSG00000141449|ENST00000424526|GREB1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.8271789550781	2	511.827101	1021.63965	0.21319	0.00010912	0.16637	8.515E-05	0.37956	0.00019427	511.8271701756989	32.843	0.55025	32.897	32.682	33.232	0.054371					42	19	3	0	0	0	0.28128	1	6292	6292		11.64	0	1	468910			34050	4380	19913	19914	41453	41453					0.12969434705087224
PRRMLEADL	9	Unmodified	_PRRMLEADL_					0	0	0			REV__nc|ENSG00000116198|O60308-3|CEP104	REV__nc|ENSG00000116198|O60308-3|CEP104	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.282470703125	2	550.797683	1099.58081	0.29557	0.0001628	-0.39726	-0.00021881	-0.10169	-5.6011E-05	550.797565532783	25.207	0.66124	25.207	24.93	25.591	0					50	22	3	0	0	0	0.29638	1	4010	4010		9.3831	1.7742	1	113480	+		34051	14917	19914	19915	41454	41454					0.035005903484488954
PRRMREME	8	Unmodified	_PRRMREME_					0	0	0			REV__nc|ENSG00000159200|P53805-4|RCAN1	REV__nc|ENSG00000159200|P53805-4|RCAN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7869873046875	2	552.773685	1103.53282	0.56344	0.00031146	1.9006	0.0010506	2.464	0.001362	552.7747817312154	21.39	0.45456	21.29	21.073	21.528	-0.10034					23	15	2	0	0	0	0.34198	1	2807	2807		10.824	1.4408	1	74413	+		34052	16841	19915	19916	41455	41455					-0.014808068432330401
PRRNELRSRRA	11	Unmodified	_PRRNELRSRRA_					0	0	0		ENST00000489343.5_1_3:132440828-132441221:+|nuORF	ENST00000489343.5_1_3:132440828-132441221:+|nuORF	ENST00000489343.5_1_3:132440828-132441221:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2903137207031	3	470.943147	1409.80761	0.035282	1.6616E-05	0.051315	2.4166E-05	0.086596	4.0782E-05	470.9431043035503	20.079	0.88148	20.079	19.713	20.594	0					57	32	3	0	0	0	0.33347	1	2515	2515		0.45452	0	1	189850			34053	11146	19916	19917	41456	41456					0.11909889951562036
PRRPGPRTA	9	Unmodified	_PRRPGPRTA_					0	0	0			REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2961120605469	2	504.296499	1006.57845	-0.05656	-2.8523E-05	-0.2815	-0.00014196	-0.33806	-0.00017048	504.29641954307954	13.517	0.81678	13.45	13.189	14.005	-0.067496					90	28	4	0	0	0	0.20626	1	483	483		22.736	1.1993	1	1767900	+		34054	22626	19917	19918	41457	41457					0.07541922725658878
PRRPTPPPPR	10	Unmodified	_PRRPTPPPPR_					0	0	0			REV__nc|ENSG00000289720|Q96J02-3|ITCH	REV__nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.846923828125	2	585.846356	1169.67816	0.31841	0.00018654	0.60205	0.00035271	0.92046	0.00053925	585.8467528037909	62.802	1.3069	62.794	62.384	63.691	-0.0085526					155	47	5	0	0	0	0.27059	1	15532	15532		24.021	24.021	1	10868000	+		34055	13861	19918	19919	41458	41458					0.10010740339589574
PRRPTPPPPR	10	Unmodified	_PRRPTPPPPR_					0	0	0			REV__nc|ENSG00000289720|Q96J02-3|ITCH	REV__nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8140869140625	2	585.846356	1169.67816	0.31841	0.00018654	0.60205	0.00035271	0.92046	0.00053925	585.8467528037909	62.802	1.3069	62.794	62.384	63.691	-0.0085526					155	47	5	0	0	0	0.29038	1	15474	15474		18.146	18.146	1	10868000	+		34056	13861	19918	19919	41459	41459					0.10010740339589574
PRRPTPPPPR	10	Unmodified	_PRRPTPPPPR_					0	0	0			REV__nc|ENSG00000289720|Q96J02-3|ITCH	REV__nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	585.846356	1169.67816	0.36207	0.00021212	0.69074	0.00040467	1.0528	0.00061679	585.8468123355368	62.84	1.3205	62.84	62.45	63.771	0	0.016161	-2.8501E-05	NaN	24.021	153	48	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11163000	+		34057	13861	19918	19919							0.10010740339589574
PRRPTPPPPR	10	Unmodified	_PRRPTPPPPR_					0	0	0			REV__nc|ENSG00000289720|Q96J02-3|ITCH	REV__nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	585.846356	1169.67816	0.33722	0.00019756	0.79861	0.00046786	1.1358	0.00066542	585.8468992346562	62.742	1.2098	62.838	62.44	63.65	0.095722	0.014095	9.7887E-05	NaN	24.021	144	43	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10966000	+		34058	13861	19918	19919							0.10010740339589574
PRRQAPGP	8	Unmodified	_PRRQAPGP_					0	0	0		nc|ENSG00000273749|Q7L576-2|CYFIP1	nc|ENSG00000273749|Q7L576-2|CYFIP1	nc|ENSG00000273749|Q7L576-2|CYFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.7513427734375	2	439.751393	877.488233	-0.2151	-9.4592E-05	0.061775	2.7166E-05	-0.15333	-6.7426E-05	439.75133755385326	14.314	0.82616	14.314	13.992	14.819	0					60	28	3	0	0	0	0.41097	1	728	728		18.135	0	1	473030			34059	12995	19919	19920	41460	41460					0.04458873397231855
PRRQLTNFLH	10	Unmodified	_PRRQLTNFLH_					0	0	0			REV__nc|ENSG00000088888|Q7Z434-5|MAVS	REV__nc|ENSG00000088888|Q7Z434-5|MAVS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.59130859375	3	427.910672	1280.71019	-0.27455	-0.00011748	0.38191	0.00016343	0.10737	4.5944E-05	427.9115387848303	16.48	0.94951	16.366	16.047	16.996	-0.11434					93	33	5	0	0	0	0.3144	1	1357	1357		7.9454	1.3219	1	479440	+		34060	14018	19920	19921	41461	41461					0.08106108022730041
PRRQQVPAQ	9	Unmodified	_PRRQQVPAQ_					0	0	0			REV__ENST00000505306.5_1_17:48154319-48165696:+|nuORF	REV__ENST00000505306.5_1_17:48154319-48165696:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3071899414062	2	540.307064	1078.59957	0.26892	0.0001453	-0.26966	-0.0001457	-0.00074041	-4.0005E-07	540.3069083247186	17.191	0.46519	17.074	16.858	17.323	-0.11739					29	16	2	0	0	0	0.33276	1	1577	1577		3.9444	0.66309	1	105510	+		34061	21737	19921	19922	41462	41462					0.06341888034512522
PRRQQVPAQ	9	Unmodified	_PRRQQVPAQ_					0	0	0			REV__ENST00000505306.5_1_17:48154319-48165696:+|nuORF	REV__ENST00000505306.5_1_17:48154319-48165696:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3073120117188	2	540.307064	1078.59957	0.26892	0.0001453	-0.26966	-0.0001457	-0.00074041	-4.0005E-07	540.3069083247186	17.191	0.46519	17.074	16.858	17.323	-0.11739					29	16	2	0	0	0	0.25988	1	1527	1527		3.9444	0.66309	1	105510	+		34062	21737	19921	19922	41463	41463					0.06341888034512522
PRRQQVPAQ	9	Unmodified	_PRRQQVPAQ_					0	0	0			REV__ENST00000505306.5_1_17:48154319-48165696:+|nuORF	REV__ENST00000505306.5_1_17:48154319-48165696:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.808837890625	2	540.307064	1078.59957	0.58834	0.00031789	-1.1248	-0.00060775	-0.53649	-0.00028987	540.3056612893748	17.105	1.0071	17.045	16.81	17.817	-0.060429					51	35	3	0	0	0	0.33276	1	1561	1561		3.9444	0.3479	1	100270	+		34063	21737	19921	19922	41464	41464					0.06341888034512522
PRRRGWSL	8	Unmodified	_PRRRGWSL_					0	0	0			REV__nc|ENSG00000022567|Q5BKX6-2|SLC45A4	REV__nc|ENSG00000022567|Q5BKX6-2|SLC45A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2984008789062	2	514.299042	1026.58353	-0.20659	-0.00010625	-0.84018	-0.0004321	-1.0468	-0.00053835	514.2986605797435	25.117	0.61004	25.086	24.796	25.406	-0.03141					36	20	2	0	0	0	0.41758	1	3968	3968		16.942	1.6938	1	92611	+		34064	13466	19922	19923	41465	41465					0.07130226588265032
PRRRPTPQ	8	Unmodified	_PRRRPTPQ_					0	0	0			REV__ENST00000394429.5_1_11:64509002-64510391:-|nuORF	REV__ENST00000394429.5_1_11:64509002-64510391:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2963562011719	2	504.296499	1006.57845	-0.0073737	-3.7185E-06	-0.30942	-0.00015604	-0.31679	-0.00015976	504.2963969009363	13.444	0.90548	13.444	13.118	14.024	0					102	31	5	0	0	0	0.43758	1	500	500		10.074	0	1	1927700	+		34065	20618	19923	19924	41466	41466					0.0754192272564751
PRRRRRTIK	9	Unmodified	_PRRRRRTIK_					0	0	0			REV__ENST00000264021.7_1_11:118427738-118435715:-|nuORF	REV__ENST00000264021.7_1_11:118427738-118435715:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2116394042969	3	413.605806	1237.79559	-0.81596	-0.00033749	-2.7299	-0.0011291	-3.5459	-0.0014666	413.60467849410236	34.468	0.35912	34.543	34.353	34.713	0.075302					12	12	2	0	0	0	0.2615	1	6753	6753		0.96228	0	1	53274	+		34066	19631	19924	19925	41467	41467					0.1862031799905708
PRRRSPRLPF	10	Unmodified	_PRRRSPRLPF_					0	0	0		ENST00000339382.3_2_8:30890609-30891086:-|nuORF	ENST00000339382.3_2_8:30890609-30891086:-|nuORF	ENST00000339382.3_2_8:30890609-30891086:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.91375732421875	3	427.926545	1280.75781	0.0028809	1.2328E-06	-0.86765	-0.00037129	-0.86477	-0.00037006	427.9261370755906	23.915	1.0871	23.876	23.391	24.478	-0.038927					77	37	3	0	0	0	0.3179	1	3598	3598		8.9762	3.1928	1	143630			34067	9510	19925	19926	41468	41468					0.12865807013577069
PRRRSPRLPF	10	Unmodified	_PRRRSPRLPF_					0	0	0		ENST00000339382.3_2_8:30890609-30891086:-|nuORF	ENST00000339382.3_2_8:30890609-30891086:-|nuORF	ENST00000339382.3_2_8:30890609-30891086:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	427.926545	1280.75781	-0.13374	-5.7233E-05	-0.614	-0.00026275	-0.74775	-0.00031998	427.92630371729035	23.847	0.96505	23.774	23.422	24.387	-0.072559	0.01243	0.0001377	NaN	5.7834	73	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155530			34068	9510	19925	19926							0.12865807013577069
PRRSALPS	8	Unmodified	_PRRSALPS_					0	0	0			REV__ENST00000281708.8_1_4:153456308-153456887:-|nuORF	REV__ENST00000281708.8_1_4:153456308-153456887:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.2586364746094	2	442.259051	882.503549	0.17521	7.7489E-05	-0.89001	-0.00039362	-0.7148	-0.00031613	442.25854098723335	20.137	1.2794	20.137	19.493	20.772	0					90	46	3	0	0	0	0.18275	1	2464	2464		46.021	0	1	519700	+		34069	19715	19926	19927	41469	41469					0.05759740194423557
PRRSALPS	8	Unmodified	_PRRSALPS_					0	0	0			REV__ENST00000281708.8_1_4:153456308-153456887:-|nuORF	REV__ENST00000281708.8_1_4:153456308-153456887:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.2586364746094	2	442.259051	882.503549	0.30462	0.00013472	-0.94882	-0.00041962	-0.64419	-0.0002849	442.25850482332106	20.371	0.9934	20.261	19.735	20.729	-0.11003					83	35	3	0	0	0	0.18275	1	2517	2517		46.021	4.1813	1	711940	+		34070	19715	19926	19927	41470	41470					0.05759740194423557
PRRSALPS	8	Unmodified	_PRRSALPS_					0	0	0			REV__ENST00000281708.8_1_4:153456308-153456887:-|nuORF	REV__ENST00000281708.8_1_4:153456308-153456887:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2586364746094	2	442.259051	882.503549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.14	1	20.085	19.585	20.585	-0.055693								0	0	0	0.24099	1	2445	2445		37.974	0	1		+		34071	19715	19926	19927	41471	41471					0.05759740194423557
PRRSRRQLPPV	11	Unmodified	_PRRSRRQLPPV_					0	0	0		ENSG00000198216|ENST00000367573|CACNA1E;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E	ENSG00000198216|ENST00000367573|CACNA1E	ENSG00000198216|ENST00000367573|CACNA1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.5989074707031	3	454.612738	1360.81638	0.32075	0.00014582	1.2222	0.00055562	1.5429	0.00070144	454.61320317453595	44.899	0.67131	44.974	44.723	45.394	0.075047					56	24	3	0	0	0	0.45202	1	10055	10055		4.4062	0.56024	1	616210			34072	8052	19927	19928	41472	41472					0.15040863588069442
PRRSVGEL	8	Unmodified	_PRRSVGEL_					0	0	0		ENSG00000137825|ENST00000260386|ITPKA	ENSG00000137825|ENST00000260386|ITPKA	ENSG00000137825|ENST00000260386|ITPKA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2712707519531	2	457.264333	912.514114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.135	1	37.228	36.728	37.728	0.093018								0	0	0	0.29147	1	7608	7608		30.225	7.0764	1				34073	4084	19928	19929	41473	41473					0.05435722848869773
PRRTAEEKRPK	11	Unmodified	_PRRTAEEKRPK_					0	0	0		ENST00000489228.1_1_6:50789578-50789641:+|nuORF	ENST00000489228.1_1_6:50789578-50789641:+|nuORF	ENST00000489228.1_1_6:50789578-50789641:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.1642150878906	3	456.600386	1366.77933	0.32887	0.00015016	-0.29608	-0.00013519	0.032797	1.4975E-05	456.9346039883491	26.618	0.31397	26.596	26.472	26.786	-0.022238					17	10	2	0	0	0	0.33341	1	4437	4437		0.92553	0	1	50583			34074	11145	19929	19930	41474	41474					0.11061147251643888
PRRTGKGN	8	Unmodified	_PRRTGKGN_					0	0	0		nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ENSG00000165801|ENST00000298694|ARHGEF40;ENST00000555052.1_1_14:21542936-21543858:+|nuORF	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	nc|ENSG00000165801|Q8TER5-4|ARHGEF40	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7181091308594	2	443.2543	884.494047	0.33521	0.00014859	1.7943	0.00079533	2.1295	0.00094392	443.25496735187335	20.697	0.6898	20.697	20.31	21	0					29	23	2	0	0	0	0.34353	1	2507	2507		4.756	0	1	32484			34075	6001	19930	19931	41475	41475					0.04717971908905838
PRRTLRQRRRK	11	Unmodified	_PRRTLRQRRRK_					0	0	0		ENST00000360342.7_1_20:3148478-3154166:-|nuORF	ENST00000360342.7_1_20:3148478-3154166:-|nuORF	ENST00000360342.7_1_20:3148478-3154166:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3259582519531	3	508.325702	1521.95528	0.22576	0.00011476	0.53851	0.00027374	0.76427	0.0003885	508.3259753220917	104.33	0.72166	104.34	104.16	104.88	0.0011444					219	100	4	0	0	0	0.48495	1	27773	27773		0.08335	0.010087	1	989350			34076	9678	19931	19932	41476	41476					0.21517826276249252
PRRTLRQRRRK	11	Unmodified	_PRRTLRQRRRK_					0	0	0		ENST00000360342.7_1_20:3148478-3154166:-|nuORF	ENST00000360342.7_1_20:3148478-3154166:-|nuORF	ENST00000360342.7_1_20:3148478-3154166:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	508.325702	1521.95528	-0.083963	-4.268E-05	0.41379	0.00021034	0.32983	0.00016766	508.3259091231751	104.26	0.26958	104.26	104.14	104.41	0	-0.015701	-8.8677E-05	NaN	0.08335	72	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	874760			34077	9678	19931	19932							0.21517826276249252
PRRTLRQRRRK	11	Unmodified	_PRRTLRQRRRK_					0	0	0		ENST00000360342.7_1_20:3148478-3154166:-|nuORF	ENST00000360342.7_1_20:3148478-3154166:-|nuORF	ENST00000360342.7_1_20:3148478-3154166:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	508.325702	1521.95528	0.22576	0.00011476	0.53851	0.00027374	0.76427	0.0003885	508.3259753220917	104.33	0.72166	104.34	104.16	104.88	0.0011444	0.058666	0.00010151	NaN	0.08335	219	100	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	989350			34078	9678	19931	19932							0.21517826276249252
PRRWGTTSAGS	11	Unmodified	_PRRWGTTSAGS_					0	0	0			REV__ENST00000460181.5_1_9:130565203-130569527:+|nuORF	REV__ENST00000460181.5_1_9:130565203-130569527:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3004760742188	2	588.299436	1174.58432	0.484	0.00028474	0.63859	0.00037568	1.1226	0.00066042	588.3001411192698	32.009	0.89378	32.009	31.636	32.529	0					66	31	3	0	0	0	0.39802	1	6110	6110		11.495	2.7493	1	836470	+		34079	21199	19932	19933	41477	41477					0.004009764466673005
PRRWGTTSAGS	11	Unmodified	_PRRWGTTSAGS_					0	0	0			REV__ENST00000460181.5_1_9:130565203-130569527:+|nuORF	REV__ENST00000460181.5_1_9:130565203-130569527:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.300537109375	2	588.299436	1174.58432	0.50301	0.00029592	0.86321	0.00050783	1.3662	0.00080375	588.3001271338644	31.897	0.92105	31.939	31.6	32.521	0.042364					69	32	3	0	0	0	0.39802	3	6101	6051;6101;6109		11.495	7.609	1	796100	+		34080	21199	19932	19933	41478;41479;41480	41479					0.004009764466673005
PRRWGTTSAGS	11	Unmodified	_PRRWGTTSAGS_					0	0	0			REV__ENST00000460181.5_1_9:130565203-130569527:+|nuORF	REV__ENST00000460181.5_1_9:130565203-130569527:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.6119995117188	2	588.299436	1174.58432	0.50301	0.00029592	0.86321	0.00050783	1.3662	0.00080375	588.3001271338644	31.897	0.92105	31.939	31.6	32.521	0.042364					69	32	3	0	0	0	0.32798	1	6147	6147		11.495	11.495	1	796100	+		34081	21199	19932	19933	41481	41481					0.004009764466673005
PRRWLLLC	8	Unmodified	_PRRWLLLC_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2786254882812	2	528.810396	1055.60624	0.15186	8.0304E-05	0.50867	0.00026899	0.66053	0.00034929	528.8111398605313	12.585	0.41936	12.585	12.332	12.751	0					18	13	2	0	0	0	0.34408	1	180	180		0.6015	0	1	28701			34082	1603;1655	19933	19934	41482	41482					0.08066109661535847
PRRWLWLKP	9	Unmodified	_PRRWLWLKP_					0	0	0		ENST00000341567.8_1_7:66418291-66420567:+|nuORF	ENST00000341567.8_1_7:66418291-66420567:+|nuORF	ENST00000341567.8_1_7:66418291-66420567:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.9207763671875	3	417.92062	1250.74003	0.30289	0.00012658	-0.010637	-4.4453E-06	0.29226	0.00012214	417.92053783442583	39.888	1.9383	39.98	39.226	41.165	0.09267					241	70	5	0	0	0	0.34387	1	8394	8394		2.2828	2.2828	1	4285000			34083	9525	19934	19935	41483	41483					0.12469091758725881
PRRWLWLKP	9	Unmodified	_PRRWLWLKP_					0	0	0		ENST00000341567.8_1_7:66418291-66420567:+|nuORF	ENST00000341567.8_1_7:66418291-66420567:+|nuORF	ENST00000341567.8_1_7:66418291-66420567:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	417.92062	1250.74003	-0.036769	-1.5367E-05	0.32648	0.00013644	0.28971	0.00012108	417.92068418982836	40.225	1.984	40.225	39.242	41.225	0	0.14768	0.00023515	NaN	2.2828	262	72	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3810600			34084	9525	19934	19935							0.12469091758725881
PRRWLWLKP	9	Unmodified	_PRRWLWLKP_					0	0	0		ENST00000341567.8_1_7:66418291-66420567:+|nuORF	ENST00000341567.8_1_7:66418291-66420567:+|nuORF	ENST00000341567.8_1_7:66418291-66420567:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	417.92062	1250.74003	0.19941	8.3339E-05	0.13786	5.7615E-05	0.33727	0.00014095	417.9205899460067	39.927	1.8886	40.027	39.262	41.151	0.099403	-0.050814	-1.3333E-06	NaN	2.2828	231	68	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4150600			34085	9525	19934	19935							0.12469091758725881
PRSAPRPPPV	10	Unmodified	_PRSAPRPPPV_					0	0	0			REV__nc|ENSG00000157107|Q0JRZ9-3|FCHO2	REV__nc|ENSG00000157107|Q0JRZ9-3|FCHO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2965087890625	2	537.314358	1072.61416	0.4484	0.00024093	-0.64967	-0.00034908	-0.20127	-0.00010815	537.3138578255493	30.128	0.59005	30.156	29.933	30.523	0.027948					34	20	2	0	0	0	0.38515	1	5527	5527		6.2058	0	1	144410	+		34086	16773	19935	19936	41484	41484					0.08075960182645758
PRSFHLKE	8	Unmodified	_PRSFHLKE_					0	0	0			REV__nc|ENSG00000135297|Q9Y2Z2-5|MTO1	REV__nc|ENSG00000135297|Q9Y2Z2-5|MTO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2905578613281	2	507.279983	1012.54541	0.012173	6.1751E-06	-3.7843	-0.0019197	-3.7721	-0.0019135	507.2782779944207	14.537	0.53797	14.537	14.221	14.759	0					28	18	2	0	0	0	0.45544	1	821	821		3.9444	0.3479	1	57496	+		34087	15730	19936	19937	41485	41485					0.03964295882940405
PRSGGVRV	8	Unmodified	_PRSGGVRV_					0	0	0			REV__ENST00000456860.6_2_11:123396356-123396845:+|nuORF	REV__ENST00000456860.6_2_11:123396356-123396845:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.9056091308594	2	414.245944	826.477334	-0.068353	-2.8315E-05	0.34371	0.00014238	0.27535	0.00011406	414.2460021847721	14.873	0.47654	14.808	14.564	15.041	-0.064413					27	16	2	0	0	0	0.34378	1	919	919		3.9444	3.9444	1	197140	+		34088	21176	19937	19938	41486	41486					0.05715471022949714
PRSHLWMV	8	Unmodified	_PRSHLWMV_					0	0	0		ENST00000488216.5_1_X:48434237-48434306:+|nuORF	ENST00000488216.5_1_X:48434237-48434306:+|nuORF	ENST00000488216.5_1_X:48434237-48434306:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7987670898438	2	513.271104	1024.52766	0.29063	0.00014917	2.27	0.0011652	2.5607	0.0013143	513.2720616106498	24.694	0.64054	24.694	24.395	25.035	0					34	21	2	0	0	0	0.34272	1	3804	3804		7.9102	1.187	1	59742			34089	11133	19938	19939	41487	41487					0.01637257356446753
PRSIGKLAW	9	Unmodified	_PRSIGKLAW_					0	0	0			REV__ENSG00000196391|ENST00000354377|ZNF774	REV__ENSG00000196391|ENST00000354377|ZNF774	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.780029296875	2	514.306001	1026.59745	0.35388	0.000182	-0.42329	-0.0002177	-0.069418	-3.5702E-05	514.3054657616491	40.766	0.55085	40.859	40.667	41.218	0.09267					34	20	3	0	0	0	0.23784	1	8707	8707		9.3831	0	1	241140	+		34090	18647	19939	19940	41488	41488					0.08521459296684952
PRSKLPTLS	9	Unmodified	_PRSKLPTLS_					0	0	0		ENSG00000222046|ENST00000409358|DCDC2B	ENSG00000222046|ENST00000409358|DCDC2B	ENSG00000222046|ENST00000409358|DCDC2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.8035888671875	2	499.803291	997.59203	0.38111	0.00019048	0.16993	8.4932E-05	0.55104	0.00027541	499.80322691355474	29.216	0.88861	29.228	28.915	29.803	0.012266					70	30	3	0	0	0	0.032589	1	5219	5219		59.368	2.1193	1	1088800			34091	8432	19940	19941	41489	41489					0.09313735714226823
PRSKRIRFPG	10	Unmodified	_PRSKRIRFPG_					0	0	0		ENST00000474329.2_1_19:56728686-56728920:-|nuORF	ENST00000474329.2_1_19:56728686-56728920:-|nuORF	ENST00000474329.2_1_19:56728686-56728920:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5835266113281	3	405.247396	1212.72036	-0.033661	-1.3641E-05	-2.2441	-0.00090941	-2.2777	-0.00092305	405.24654483862514	20.082	0.57512	19.966	19.579	20.154	-0.11592					40	19	3	0	0	0	0.32143	1	2392	2392		1.5923	1.5923	1	37482			34092	10922	19941	19942	41490	41490					0.12250715747995855
PRSLRDTPGE	10	Unmodified	_PRSLRDTPGE_					0	0	0		ENST00000370490.1_1_X:144903476-144903611:+|nuORF;ENST00000335565.4_2_X:144903251-144903611:+|nuORF	ENST00000370490.1_1_X:144903476-144903611:+|nuORF	ENST00000370490.1_1_X:144903476-144903611:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.2689208984375	2	564.293819	1126.57309	0.051475	2.9047E-05	2.7966	0.0015781	2.848	0.0016071	564.295227237449	27.709	0.48515	27.688	27.437	27.923	-0.021412					23	16	2	0	0	0	0.31958	1	4771	4771		5.2969	3.6443	1	81579			34093	9481	19942	19943	41491	41491					0.014861543525057641
PRSPSSTQP	9	Unmodified	_PRSPSSTQP_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-4|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-4|TRIOBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2900390625	2	478.743431	955.472308	0.072439	3.4679E-05	0.47181	0.00022588	0.54425	0.00026056	478.7436932042545	16.642	0.65532	16.642	16.184	16.839	0					51	22	3	0	0	0	0.25779	1	1277	1277		6.2058	0	1	82053	+		34094	14163	19943	19944	41492	41492					-0.007208776303286868
PRSQHESGP	9	Unmodified	_PRSQHESGP_					0	0	0			REV__ENST00000592414.1_1_19:3055403-3056603:-|nuORF	REV__ENST00000592414.1_1_19:3055403-3056603:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.25445556640625	2	497.73868	993.462806	0.14138	7.0371E-05	3.649	0.0018163	3.7904	0.0018866	497.74028366870857	15.502	0.38578	15.502	15.348	15.734	0					16	12	2	0	0	0	0.3208	1	1038	1038		5.7319	0.50118	1	19134	+		34095	22572	19944	19945	41493	41493					-0.034186459158490834
PRSQHESGP	9	Unmodified	_PRSQHESGP_					0	0	0			REV__ENST00000592414.1_1_19:3055403-3056603:-|nuORF	REV__ENST00000592414.1_1_19:3055403-3056603:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	497.73868	993.462806	0.14138	7.0371E-05	3.649	0.0018163	3.7904	0.0018866	497.74028366870857	15.502	0.38578	15.502	15.348	15.734	0	0.16971	0.00017182	NaN	5.7319	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19134	+		34096	22572	19944	19945							-0.034186459158490834
PRSRWSTRTQ	10	Unmodified	_PRSRWSTRTQ_					0	0	0		ENST00000478215.1_1_7:94054902-94055162:+|nuORF	ENST00000478215.1_1_7:94054902-94055162:+|nuORF	ENST00000478215.1_1_7:94054902-94055162:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.234619140625	3	425.561932	1273.66397	-0.1439	-6.124E-05	-2.911	-0.0012388	-3.0549	-0.0013	425.8948421530221	19.954	0.54487	19.954	19.547	20.092	0					32	19	2	0	0	0	0.31958	1	2391	2391		2.8433	1.5136	1	119840			34097	10968	19945	19946	41494	41494					0.03808043120648108
PRSSCSRRRAD	11	Unmodified	_PRSSCSRRRAD_					0	0	0		ENST00000330871.3_1_17:76355142-76356149:-|nuORF	ENST00000330871.3_1_17:76355142-76356149:-|nuORF	ENST00000330871.3_1_17:76355142-76356149:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.88818359375	3	430.88631	1289.6371	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.336	1	24.263	23.763	24.763	-0.072559								0	0	0	0.37707	1	3722	3722		0.92553	0	1				34098	9441	19946	19947	41495	41495					0.003866112378318576
PRSSFPSDCL	10	Unmodified	_PRSSFPSDCL_					0	0	0			REV__ENST00000415930.7_2_19:34890945-34891167:+|nuORF	REV__ENST00000415930.7_2_19:34890945-34891167:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.7568969726562	2	554.758223	1107.50189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.42	1	28.416	27.916	28.916	-0.0042572								0	0	0	0.33137	1	4958	4958		22.658	2.0772	1		+		34099	20813	19947	19948	41496	41496					-0.04755681676488166
PRSSRSQR	8	Unmodified	_PRSSRSQR_					0	0	0			REV__nc|ENSG00000111834|Q5TD94-2|RSPH4A	REV__nc|ENSG00000111834|Q5TD94-2|RSPH4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.75811767578125	2	487.267939	972.521324	0.11411	5.5603E-05	-1.8077	-0.00088082	-1.6936	-0.00082522	487.2670235254048	23.246	0.98108	23.158	22.883	23.864	-0.087608					57	34	2	0	0	0	0.43302	1	3348	3348		11.64	0	1	242100	+		34100	14740	19948	19949	41497	41497					0.033964554492854404
PRSSTANREE	10	Unmodified	_PRSSTANREE_					0	0	0			REV__ENST00000272117.7_1_1:226924335-226924629:-|nuORF	REV__ENST00000272117.7_1_1:226924335-226924629:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.804931640625	2	573.778533	1145.54251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.304	1	26.281	25.781	26.781	-0.022238								0	0	0	0.37869	1	4311	4311		2.7352	0	1		+		34101	19677	19949	19950	41498	41498					-0.02443624032525804
PRSWFQHWSRT	11	Unmodified	_PRSWFQHWSRT_					0	0	0		ENST00000301021.7_1_16:88928025-88928253:+|nuORF	ENST00000301021.7_1_16:88928025-88928253:+|nuORF	ENST00000301021.7_1_16:88928025-88928253:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2655944824219	3	496.581215	1486.72182	0.46517	0.00023099	0.14091	6.9974E-05	0.60608	0.00030097	496.9157278973819	30.211	0.58839	30.239	29.964	30.552	0.027946					45	20	3	0	0	0	0.33303	1	5425	5425		2.4348	1.1051	1	325430			34102	9223	19950	19951	41499	41499					-0.002076949539286943
PRSWFQHWSRT	11	Unmodified	_PRSWFQHWSRT_					0	0	0		ENST00000301021.7_1_16:88928025-88928253:+|nuORF	ENST00000301021.7_1_16:88928025-88928253:+|nuORF	ENST00000301021.7_1_16:88928025-88928253:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	496.581215	1486.72182	0.046995	2.3337E-05	0.30714	0.00015252	0.35413	0.00017586	496.9158966329869	30.232	0.54248	30.259	29.987	30.53	0.027159	0.021775	0.00048271	NaN	2.4348	48	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332390			34103	9223	19950	19951							-0.002076949539286943
PRTAGHLDLE	10	Unmodified	_PRTAGHLDLE_					0	0	0			REV__ENST00000369902.7_1_10:104391017-104391560:+|nuORF	REV__ENST00000369902.7_1_10:104391017-104391560:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.757080078125	2	554.790912	1107.56727	0.026121	1.4492E-05	0.12948	7.1835E-05	0.1556	8.6327E-05	554.790746457879	18.095	0.7448	18.037	17.738	18.483	-0.058172					35	26	2	0	0	0	0.32132	1	1843	1843		1.4819	0	1	49357	+		34104	20366	19951	19952	41500	41500					0.017790558408705692
PRTAPGVRPP	10	Unmodified	_PRTAPGVRPP_					0	0	0		ENST00000555765.5_1_14:35183662-35183746:-|nuORF	ENST00000555765.5_1_14:35183662-35183746:-|nuORF	ENST00000555765.5_1_14:35183662-35183746:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.789794921875	2	524.306532	1046.59851	0.53322	0.00027957	0.12771	6.6961E-05	0.66093	0.00034653	524.3061713775496	23.654	0.45382	23.615	23.311	23.765	-0.038927					25	15	2	0	0	0	0.31581	1	3516	3516		11.495	0	1	59204			34105	11849	19952	19953	41501	41501					0.07707673665595394
PRTAPGVRPP	10	Unmodified	_PRTAPGVRPP_					0	0	0		ENST00000555765.5_1_14:35183662-35183746:-|nuORF	ENST00000555765.5_1_14:35183662-35183746:-|nuORF	ENST00000555765.5_1_14:35183662-35183746:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	524.306532	1046.59851	0.33914	0.00017781	0.72794	0.00038166	1.0671	0.00055948	524.3065252127715	23.563	0.45135	23.491	23.34	23.791	-0.072559	-0.060041	0.00040128	NaN	11.495	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58116			34106	11849	19952	19953							0.07707673665595394
PRTCDRSSF	9	Unmodified	_PRTCDRSSF_					0	0	0			REV__ENSG00000158859|ENST00000367996|ADAMTS4	REV__ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2269287109375	2	534.74819	1067.48183	0.50886	0.00027211	-0.61252	-0.00032754	-0.10366	-5.5429E-05	534.7478983401755	28.83	0.47661	28.83	28.64	29.117	0					23	16	2	0	0	0	0.25202	1	5050	5050		10.824	1.4765	1	113830	+		34107	16826	19953	19954	41502	41502					-0.04921432616447419
PRTDIPLKR	9	Unmodified	_PRTDIPLKR_					0	0	0		ENST00000368178.3_1_1:157716528-157737507:-|nuORF	ENST00000368178.3_1_1:157716528-157737507:-|nuORF	ENST00000368178.3_1_1:157716528-157737507:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3356323242188	2	548.33529	1094.65603	0.26226	0.00014381	0.13141	7.2058E-05	0.39368	0.00021587	548.3353987589409	22.416	1.2322	22.416	22.076	23.308	0					123	42	4	0	0	0	0.31417	1	3332	3332		6.7232	2.7788	1	3370400			34108	9753	19954	19955	41503	41503					0.11248515871170639
PRTDIPLKR	9	Unmodified	_PRTDIPLKR_					0	0	0		ENST00000368178.3_1_1:157716528-157737507:-|nuORF	ENST00000368178.3_1_1:157716528-157737507:-|nuORF	ENST00000368178.3_1_1:157716528-157737507:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.335205078125	2	548.33529	1094.65603	0.35858	0.00019662	-0.00825	-4.5238E-06	0.35033	0.0001921	548.3353305802906	22.487	1.3232	22.399	22.057	23.381	-0.087608					151	47	5	0	0	0	0.28674	1	3358	3358		10.824	0.75	1	3296800			34109	9753	19954	19955	41504	41504					0.11248515871170639
PRTENRQE	8	Unmodified	_PRTENRQE_					0	0	0			REV__ENST00000411532.1_1_22:30197042-30198089:-|nuORF	REV__ENST00000411532.1_1_22:30197042-30198089:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.814208984375	2	515.257237	1028.49992	-0.22467	-0.00011576	2.901	0.0014948	2.6763	0.001379	515.2589400660204	12.813	0.29435	12.745	12.61	12.905	-0.067495					23	9	4	0	0	0	0.34414	1	228	228		2.0598	0.21551	1	89780	+		34110	20774	19955	19956	41505	41505					-0.013189743701104817
PRTFPAPNI	9	Unmodified	_PRTFPAPNI_					0	0	0			REV__nc|ENSG00000286140|P0CG12|DERPC	REV__nc|ENSG00000286140|P0CG12|DERPC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7804870605469	2	506.782359	1011.55016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.916	1	29.928	29.428	30.428	0.012266								0	0	0	0.22377	1	5412	5412		14.838	2.3067	1		+		34111	23243	19956	19957	41506	41506					0.04485180025687896
PRTGLLQN	8	Unmodified	_PRTGLLQN_					0	0	0		nc|ENSG00000013619|Q13495-3|MAMLD1	nc|ENSG00000013619|Q13495-3|MAMLD1	nc|ENSG00000013619|Q13495-3|MAMLD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.59869384765625	2	449.758884	897.503215	-0.076556	-3.4432E-05	-0.40183	-0.00018073	-0.47839	-0.00021516	449.7586480470789	15.137	0.45947	15.137	15.012	15.471	0					18	15	2	0	0	0	0.34414	1	913	913		2.0598	0	1	44510			34112	12564	19957	19958	41507	41507					0.05036320474562217
PRTHLSVSV	9	Unmodified	_PRTHLSVSV_					0	0	0			REV__ENST00000302351.8_1_5:73936577-73936787:-|nuORF	REV__ENST00000302351.8_1_5:73936577-73936787:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7885437011719	2	498.285266	994.555979	0.62948	0.00031366	-4.0855	-0.0020358	-3.456	-0.0017221	498.28315681783147	36.842	0.47746	36.842	36.756	37.233	0					24	16	2	0	0	0	0.22596	1	7509	7509		15.847	11.518	1	532280	+		34113	19830	19958	19959	41508	41508					0.05848278537382612
PRTLALRERL	10	Unmodified	_PRTLALRERL_					0	0	0		ENSG00000135451|ENST00000257909|TROAP	ENSG00000135451|ENST00000257909|TROAP	ENSG00000135451|ENST00000257909|TROAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.9222412109375	3	408.922689	1223.74624	-0.066462	-2.7178E-05	-0.57356	-0.00023454	-0.64002	-0.00026172	408.9222293552945	95.698	2.6041	95.776	95.351	97.955	0.077415					351	255	2	0	0	0	0.3994	3	25509	25509;25546;25621		3.5871	0	1	2129500			34114	3878	19959	19960	41509;41510;41511	41509					0.14331565199586294
PRTMRVLQ	8	Unmodified	_PRTMRVLQ_					0	0	0		ENST00000459905.5_1_9:139835382-139837220:-|nuORF;ENST00000483559.5_1_9:139835382-139837095:-|nuORF;ENSG00000159069|ENST00000325285|FBXW5	ENST00000459905.5_1_9:139835382-139837220:-|nuORF	ENST00000459905.5_1_9:139835382-139837220:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3064270019531	2	500.789661	999.564769	0.54228	0.00027157	-2.2096	-0.0011066	-1.6673	-0.00083498	501.29031108980314	83.367	0.26784	83.349	83.266	83.534	-0.018127					12	9	2	0	0	0	0.32886	1	21783	21783		21.747	3.6003	1	203250			34115	5385	19960	19961	41512	41512					0.06496928902197396
PRTNKTYVE	9	Unmodified	_PRTNKTYVE_					0	0	0		ENSG00000139173|ENST00000266534|TMEM117	ENSG00000139173|ENST00000266534|TMEM117	ENSG00000139173|ENST00000266534|TMEM117	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.2938842773438	2	554.293288	1106.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22	1	21.899	21.399	22.399	-0.10034								0	0	0	0.264	1	3014	3014		1.8442	0.19162	1				34116	4213	19961	19962	41513	41513					0.022999399835953227
PRTNKTYVE	9	Unmodified	_PRTNKTYVE_					0	0	0		ENSG00000139173|ENST00000266534|TMEM117	ENSG00000139173|ENST00000266534|TMEM117	ENSG00000139173|ENST00000266534|TMEM117	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.7572021484375	2	554.293288	1106.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.943	1	21.894	21.394	22.394	-0.049377								0	0	0	0.264	1	2993	2993		1.8442	0.36234	1				34117	4213	19961	19962	41514	41514					0.022999399835953227
PRTQWVLN	8	Unmodified	_PRTQWVLN_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7804870605469	2	507.279983	1012.54541	0.34844	0.00017676	-0.31843	-0.00016153	0.030007	1.5222E-05	507.27982776440246	30.05	0.48796	30.071	29.694	30.182	0.021227					25	16	2	0	0	0	0.34218	1	5412	5412		9.3474	0	1	110820			34118	2585	19962	19963	41515	41515					0.039642958829290365
PRTRLQGQKK	10	Unmodified	_PRTRLQGQKK_					0	0	0			REV__nc|ENSG00000143379|Q15047-3|SETDB1	REV__nc|ENSG00000143379|Q15047-3|SETDB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.369140625	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.86	1	112.84	112.34	113.34	-0.017303								0	0	0	0.38197	1	29349	29349		1.6526	0.17072	1		+		34119	16172	19963	19964	41516	41516					0.12890394539772387
PRTSIPRAP	9	Unmodified	_PRTSIPRAP_					0	0	0		nc|ENSG00000160360|Q86YR5-4|GPSM1;nc|ENSG00000160360|Q86YR5|GPSM1;ENSG00000160360|ENST00000440944|GPSM1	nc|ENSG00000160360|Q86YR5-4|GPSM1	nc|ENSG00000160360|Q86YR5-4|GPSM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7933044433594	2	497.793258	993.571963	0.034412	1.713E-05	-0.13226	-6.5837E-05	-0.097845	-4.8707E-05	497.7931422783675	24.946	0.86508	24.915	24.4	25.265	-0.031408					48	29	2	0	0	0	0.29638	1	3915	3915		9.3831	0	1	127750			34120	5462	19964	19965	41517	41517					0.07491984774276261
PRTSIPRAP	9	Unmodified	_PRTSIPRAP_					0	0	0		nc|ENSG00000160360|Q86YR5-4|GPSM1;nc|ENSG00000160360|Q86YR5|GPSM1;ENSG00000160360|ENST00000440944|GPSM1	nc|ENSG00000160360|Q86YR5-4|GPSM1	nc|ENSG00000160360|Q86YR5-4|GPSM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.793258	993.571963	0.27388	0.00013633	-0.22324	-0.00011113	0.050639	2.5208E-05	497.7930014677398	24.93	0.73713	24.874	24.544	25.281	-0.055931	-0.011055	3.0014E-05	NaN	9.3831	42	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107080			34121	5462	19964	19965							0.07491984774276261
PRTVQDVEER	10	Unmodified	_PRTVQDVEER_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.8877868652344	3	410.214198	1227.62076	-0.1877	-7.6995E-05	-3.0554	-0.0012534	-3.2431	-0.0013304	410.2131173409801	22.339	0.59944	22.339	22.076	22.675	0					58	20	4	0	0	0	0.31867	1	3093	3093		7.9454	4.0691	1	379060			34122	1601	19965	19966	41518	41518					0.016058085526992727
PRVDERGA	8	Unmodified	_PRVDERGA_					0	0	0			REV__ENSG00000197312|ENST00000480945|DDI2	REV__ENSG00000197312|ENST00000480945|DDI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2379150390625	2	450.238316	898.462078	0.088297	3.9755E-05	-0.43409	-0.00019545	-0.3458	-0.00015569	450.23805168253364	16.388	0.80255	16.388	16.123	16.925	0					81	27	4	0	0	0	0.44885	1	1443	1443		6.2058	0.9089	1	850290	+		34123	18726	19966	19967	41519	41519					0.008785594350911197
PRVILMSL	8	Unmodified	_PRVILMSL_					0	0	0		ENST00000555222.5_1_12:57492966-57496222:-|nuORF	ENST00000555222.5_1_12:57492966-57496222:-|nuORF	ENST00000555222.5_1_12:57492966-57496222:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.785888671875	2	464.786056	927.557558	-0.2405	-0.00011178	-0.16387	-7.6163E-05	-0.40437	-0.00018794	464.7858276005058	34.368	0.61547	34.44	34.159	34.774	0.072315					46	21	3	0	0	0	0.4397	1	6733	6733		9.3474	0	1	411870			34124	11844	19967	19968	41520	41520					0.09088196301775042
PRVIMIVT	8	Unmodified	_PRVIMIVT_					0	0	0		nc|ENSG00000132561|O00339-3|MATN2;nc|ENSG00000132561|O00339-2|MATN2;ENSG00000132561|ENST00000254898|MATN2	nc|ENSG00000132561|O00339-3|MATN2	nc|ENSG00000132561|O00339-3|MATN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.78594970703125	2	464.786056	927.557558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.628	1	34.628	34.128	35.128	0								0	0	0	0.37078	1	6848	6848		5.2307	0	1				34125	3649	19968	19969	41521	41521					0.09088196301775042
PRVIMIVT	8	Unmodified	_PRVIMIVT_					0	0	0		nc|ENSG00000132561|O00339-3|MATN2;nc|ENSG00000132561|O00339-2|MATN2;ENSG00000132561|ENST00000254898|MATN2	nc|ENSG00000132561|O00339-3|MATN2	nc|ENSG00000132561|O00339-3|MATN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.785888671875	2	464.786056	927.557558	-0.96186	-0.00044706	0.53905	0.00025054	-0.4228	-0.00019651	464.7861917388558	34.376	0.6293	34.442	34.176	34.805	0.06636					51	22	3	0	0	0	0.45169	1	6811	6811		5.2307	0	1	424100			34126	3649	19968	19969	41522	41522					0.09088196301775042
PRVIMIVT	8	Unmodified	_PRVIMIVT_					0	0	0		nc|ENSG00000132561|O00339-3|MATN2;nc|ENSG00000132561|O00339-2|MATN2;ENSG00000132561|ENST00000254898|MATN2	nc|ENSG00000132561|O00339-3|MATN2	nc|ENSG00000132561|O00339-3|MATN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7858581542969	2	464.786056	927.557558	-0.2405	-0.00011178	-0.16387	-7.6163E-05	-0.40437	-0.00018794	464.7858276005058	34.368	0.61547	34.44	34.159	34.774	0.072315					46	21	3	0	0	0	0.45169	1	6783	6783		5.2307	0	1	411870			34127	3649	19968	19969	41523	41523					0.09088196301775042
PRVIPGSRTAF	11	Unmodified	_PRVIPGSRTAF_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.845947265625	2	600.846022	1199.67749	0.67232	0.00040396	-0.65559	-0.00039391	0.016729	1.0052E-05	600.8456818385745	32.117	0.51589	32.117	31.953	32.469	0					36	18	3	0	0	0	0.40332	1	6118	6118		10.8	1.4164	1	300020			34128	4077	19969	19970	41524	41524					0.08563900899889632
PRVIPGSRTAF	11	Unmodified	_PRVIPGSRTAF_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	600.846022	1199.67749	0.76794	0.00046142	-0.28952	-0.00017395	0.47843	0.00028746	600.84567081049	32.055	0.44906	32.098	31.882	32.331	0.042366	-0.024136	-2.619E-05	NaN	10.8	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271810			34129	4077	19969	19970							0.08563900899889632
PRVIPGSRTAF	11	Unmodified	_PRVIPGSRTAF_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	600.846022	1199.67749	0.40961	0.00024611	-0.10994	-6.6055E-05	0.29967	0.00018006	600.8460385928923	32.11	0.51157	32.151	31.916	32.428	0.040989	0.029305	0.00018961	NaN	10.8	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227770			34130	4077	19969	19970							0.08563900899889632
PRVKQKAG	8	Unmodified	_PRVKQKAG_					0	0	0		ENST00000492622.6_1_13:49550067-49550145:+|nuORF	ENST00000492622.6_1_13:49550067-49550145:+|nuORF	ENST00000492622.6_1_13:49550067-49550145:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.27740478515625	2	442.277244	882.539935	0.0074794	3.308E-06	0.22131	9.7881E-05	0.22879	0.00010119	442.2772483235387	18.738	0.84681	18.738	18.479	19.325	0					59	29	3	0	0	0	0.46022	1	1997	1997		2.3027	2.3027	1	262330			34131	11193	19970	19971	41525	41525					0.09396617091135795
PRVLDAMLPYL	11	Unmodified	_PRVLDAMLPYL_					0	0	0		nc|ENSG00000244005|Q9Y697-2|NFS1;ENSG00000244005|ENST00000374092|NFS1;ENST00000421540.1_1_20:34280185-34287249:-|nuORF;nc|ENSG00000244005|Q9Y697-3|NFS1	nc|ENSG00000244005|Q9Y697-2|NFS1	nc|ENSG00000244005|Q9Y697-2|NFS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.361083984375	2	644.360116	1286.70568	0.61098	0.00039369	0.35205	0.00022685	0.96303	0.00062054	644.3602261000868	85.683	1.6634	85.683	85.04	86.703	0					113	64	3	0	0	0	0.46059	1	22580	22580		3.2813	0.28607	1	379910			34132	8565	19971	19972	41526	41526					0.07379462764970413
PRVLQQVVNG	10	Unmodified	_PRVLQQVVNG_					0	0	0		ENST00000587167.1_1_17:74382350-74382590:+|nuORF	ENST00000587167.1_1_17:74382350-74382590:+|nuORF	ENST00000587167.1_1_17:74382350-74382590:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.258056640625	2	555.324922	1108.63529	0.3056	0.00016971	-1.1782	-0.0006543	-0.87262	-0.00048459	555.3247015803911	45.693	0.73761	45.753	45.361	46.098	0.059834					37	25	2	0	0	0	0.31691	1	10156	10156		5.7319	0	1	487640			34133	12128	19972	19973	41527	41527					0.08531925491524817
PRVLSGDPQN	10	Unmodified	_PRVLSGDPQN_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2623901367188	2	541.783087	1081.55162	0.16637	9.0138E-05	-0.11007	-5.9636E-05	0.056299	3.0502E-05	541.7829947983661	13.341	0.25399	13.274	13.134	13.388	-0.067495					17	8	3	0	0	0	0.32132	1	356	356		1.4819	0.79152	1	61064			34134	6471	19973	19974	41528	41528					0.014107693237974672
PRVLSGDPQN	10	Unmodified	_PRVLSGDPQN_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.783087	1081.55162	0.13854	7.5057E-05	-0.29737	-0.00016111	-0.15883	-8.6052E-05	541.7829833482464	13.269	0.31062	13.269	13.147	13.457	0	0.0089136	-0.00017985	NaN	1.4819	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55069			34135	6471	19973	19974							0.014107693237974672
PRVNEIDQLTK	11	Unmodified	_PRVNEIDQLTK_					0	0	0		ENST00000568493.1_1_15:42955968-42961628:+|nuORF	ENST00000568493.1_1_15:42955968-42961628:+|nuORF	ENST00000568493.1_1_15:42955968-42961628:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.892822265625	3	438.245498	1311.71466	-0.18014	-7.8946E-05	1.8791	0.0008235	1.6989	0.00074455	438.2461594907108	22.791	1.2877	22.791	22.446	23.734	0					72	44	2	0	0	0	0.33263	1	3231	3231		3.8459	1.5932	1	180940			34136	12001	19974	19975	41529	41529					0.07127527654984078
PRVPAESSH	9	Unmodified	_PRVPAESSH_					0	0	0		nc|ENSG00000149292|Q9H892-2|TTC12	nc|ENSG00000149292|Q9H892-2|TTC12	nc|ENSG00000149292|Q9H892-2|TTC12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.69976806640625	2	490.251423	978.488293	0.11755	5.7631E-05	-0.43445	-0.00021299	-0.3169	-0.00015536	490.2511966899043	15.834	0.31534	15.725	15.64	15.955	-0.10982					11	10	2	0	0	0	0.25938	1	1131	1131		4.3292	0.73274	1	27540			34137	12752	19975	19976	41530	41530					-0.001811713934330328
PRVPNQGI	8	Unmodified	_PRVPNQGI_					0	0	0		nc|ENSG00000116690|Q92954-5|PRG4;nc|ENSG00000116690|Q92954-4|PRG4;nc|ENSG00000116690|Q92954-3|PRG4;nc|ENSG00000116690|Q92954-6|PRG4;nc|ENSG00000116690|Q92954-2|PRG4;ENSG00000116690|ENST00000445192|PRG4	nc|ENSG00000116690|Q92954-5|PRG4	nc|ENSG00000116690|Q92954-5|PRG4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.7534484863281	2	440.753601	879.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.876	1	28.876	28.376	29.376	0								0	0	0	0.25356	1	5094	5094		36.044	3.7387	1				34138	2742	19976	19977	41531	41531					0.048083378201340565
PRVPNQGI	8	Unmodified	_PRVPNQGI_					0	0	0		nc|ENSG00000116690|Q92954-5|PRG4;nc|ENSG00000116690|Q92954-4|PRG4;nc|ENSG00000116690|Q92954-3|PRG4;nc|ENSG00000116690|Q92954-6|PRG4;nc|ENSG00000116690|Q92954-2|PRG4;ENSG00000116690|ENST00000445192|PRG4	nc|ENSG00000116690|Q92954-5|PRG4	nc|ENSG00000116690|Q92954-5|PRG4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.7533874511719	2	440.753601	879.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.855	1	28.851	28.351	29.351	-0.0042572								0	0	0	0.23984	1	5090	5090		38.151	1.685	1				34139	2742	19976	19977	41532	41532					0.048083378201340565
PRVPNQGI	8	Unmodified	_PRVPNQGI_					0	0	0		nc|ENSG00000116690|Q92954-5|PRG4;nc|ENSG00000116690|Q92954-4|PRG4;nc|ENSG00000116690|Q92954-3|PRG4;nc|ENSG00000116690|Q92954-6|PRG4;nc|ENSG00000116690|Q92954-2|PRG4;ENSG00000116690|ENST00000445192|PRG4	nc|ENSG00000116690|Q92954-5|PRG4	nc|ENSG00000116690|Q92954-5|PRG4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.75323486328125	2	440.753601	879.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.897	1	28.905	28.405	29.405	0.008007								0	0	0	0.23984	1	5097	5097		38.151	4.0487	1				34140	2742	19976	19977	41533	41533					0.048083378201340565
PRVPSPPPSPR	11	Unmodified	_PRVPSPPPSPR_					0	0	0		nc|ENSG00000171680|O94827-4|PLEKHG5;ENSG00000171680|ENST00000377728|PLEKHG5;nc|ENSG00000171680|O94827-3|PLEKHG5;nc|ENSG00000171680|O94827-7|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8383178710938	2	593.838197	1185.66184	0.26817	0.00015925	0.1882	0.00011176	0.45637	0.00027101	593.8384378356673	31.292	0.66407	31.292	30.862	31.526	0					56	23	3	0	0	0	0.28258	1	5805	5805		23.79	3.3752	1	488460			34141	6568	19977	19978	41534	41534					0.07643614382823216
PRVPSPPPSPR	11	Unmodified	_PRVPSPPPSPR_					0	0	0		nc|ENSG00000171680|O94827-4|PLEKHG5;ENSG00000171680|ENST00000377728|PLEKHG5;nc|ENSG00000171680|O94827-3|PLEKHG5;nc|ENSG00000171680|O94827-7|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	593.838197	1185.66184	0.32659	0.00019394	0.088122	5.233E-05	0.41472	0.00024627	593.838289662303	31.194	0.75999	31.235	30.747	31.507	0.040991	-0.041445	-8.4775E-05	NaN	23.79	60	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514920			34142	6568	19977	19978							0.07643614382823216
PRVQDGKPVIL	11	Unmodified	_PRVQDGKPVIL_					0	0	0		ENST00000550033.5_1_12:53701834-53703447:-|nuORF;nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS	ENST00000550033.5_1_12:53701834-53703447:-|nuORF	ENST00000550033.5_1_12:53701834-53703447:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.3560791015625	2	611.36933	1220.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.502	1	83.502	83.002	84.002	0								0	0	0	0.36517	1	21848	21848		4.897	1.9018	1				34143	1441	19978	19979	41535	41535					0.1225734073118474
PRVQQLRTI	9	Unmodified	_PRVQQLRTI_					0	0	0		ENST00000589225.5_1_17:76795804-76798500:-|nuORF	ENST00000589225.5_1_17:76795804-76798500:-|nuORF	ENST00000589225.5_1_17:76795804-76798500:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.84033203125	2	555.840739	1109.66693	0.43306	0.00024071	-0.86543	-0.00048104	-0.43236	-0.00024033	555.8401315823387	33.517	0.90487	33.517	33.259	34.164	0					51	32	2	0	0	0	0.25989	1	6550	6550		14.838	0.93222	1	604020			34144	12158	19979	19980	41536	41536					0.11647918245466826
PRVRKVALT	9	Unmodified	_PRVRKVALT_					0	0	0			REV__ENST00000583745.1_1_17:18163989-18166463:+|nuORF	REV__ENST00000583745.1_1_17:18163989-18166463:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3403930664062	2	520.340375	1038.6662	0.36855	0.00019177	1.3138	0.00068364	1.6824	0.00087541	520.3400932512991	16.644	0.85823	16.582	16.351	17.209	-0.062534					72	30	4	0	0	0	0.31763	1	1407	1407		6.2058	2.2614	1	307550	+		34145	22499	19980	19981	41537	41537					0.14841123596397665
PRVRKVALT	9	Unmodified	_PRVRKVALT_					0	0	0			REV__ENST00000583745.1_1_17:18163989-18166463:+|nuORF	REV__ENST00000583745.1_1_17:18163989-18166463:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	520.340375	1038.6662	0.33759	0.00017566	1.2491	0.00064998	1.5867	0.00082564	520.3400726137463	16.622	0.74841	16.622	16.349	17.097	0	0.02163	-3.3425E-05	NaN	6.2058	64	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339850	+		34146	22499	19980	19981							0.14841123596397665
PRVRKVALT	9	Unmodified	_PRVRKVALT_					0	0	0			REV__ENST00000583745.1_1_17:18163989-18166463:+|nuORF	REV__ENST00000583745.1_1_17:18163989-18166463:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	520.340375	1038.6662	0.16783	8.7328E-05	1.2714	0.00066158	1.4393	0.00074891	520.3401935738465	16.712	0.75207	16.598	16.362	17.114	-0.11434	-0.0026235	-1.0208E-05	NaN	6.2058	70	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340370	+		34147	22499	19980	19981							0.14841123596397665
PRVRKVALT	9	Unmodified	_PRVRKVALT_					0	0	0			REV__ENST00000583745.1_1_17:18163989-18166463:+|nuORF	REV__ENST00000583745.1_1_17:18163989-18166463:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	520.340375	1038.6662	0.36855	0.00019177	1.3138	0.00068364	1.6824	0.00087541	520.3400932512991	16.644	0.85823	16.582	16.351	17.209	-0.062534	-0.019006	3.39E-05	NaN	6.2058	72	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307550	+		34148	22499	19980	19981							0.14841123596397665
PRVRTAPRPT	10	Unmodified	_PRVRTAPRPT_					0	0	0			REV__nc|ENSG00000110713|P52948-6|NUP98	REV__nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8427124023438	2	575.843813	1149.67307	0.3573	0.00020575	-0.019504	-1.1231E-05	0.3378	0.00019452	575.8431080000703	91.368	0.35688	91.458	91.229	91.586	0.090668					40	27	2	0	0	0	0.39009	1	24254	24254		5.2969	0	1	172070	+		34149	14680	19981	19982	41538	41538					0.10422436476960684
PRVRTAPRPT	10	Unmodified	_PRVRTAPRPT_					0	0	0			REV__nc|ENSG00000110713|P52948-6|NUP98	REV__nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.84326171875	2	575.843813	1149.67307	0.26564	0.00015297	-0.64139	-0.00036934	-0.37575	-0.00021637	575.84293819352	94.154	2.7072	94.241	93.425	96.132	0.08667					330	228	3	0	0	0	0.37454	1	25175	25175		8.1555	4.2111	1	501450	+		34150	14680	19981	19982	41539	41539					0.10422436476960684
PRVRTAPRPT	10	Unmodified	_PRVRTAPRPT_					0	0	0			REV__nc|ENSG00000110713|P52948-6|NUP98	REV__nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8431396484375	2	575.843813	1149.67307	0.34092	0.00019632	-0.65546	-0.00037744	-0.31454	-0.00018113	575.8429317162594	94.274	1.1656	94.272	93.782	94.948	-0.0020142					211	95	3	0	0	0	0.37454	1	25160	25160		8.1555	2.8586	1	534500	+		34151	14680	19981	19982	41540	41540					0.10422436476960684
PRWAAYMY	8	Unmodified	_PRWAAYMY_					0	0	0			REV__OLFM2|p.V93Mfs*31|1|0.18|ENSG00000105088|chr19:9857798-9857799|-/AT|frameshift_variant	REV__OLFM2|p.V93Mfs*31|1|0.18|ENSG00000105088|chr19:9857798-9857799|-/AT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2968139648438	2	529.249837	1056.48512	0.11521	6.0974E-05	0.30544	0.00016165	0.42065	0.00022263	529.2503655487518	13.639	0.16729	13.572	13.493	13.66	-0.067495					7	5	2	0	0	0	0.34408	1	478	478		2.3027	0	1	31795	+		34152	23279	19982	19983	41541	41541					-0.04086137771787435
PRWAKVDEALA	11	Unmodified	_PRWAKVDEALA_					0	0	0			REV__nc|ENSG00000116260|O00391-2|QSOX1	REV__nc|ENSG00000116260|O00391-2|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.343505859375	2	628.343312	1254.67207	0.44529	0.0002798	0.036222	2.276E-05	0.48151	0.00030256	628.343192354976	57.48	0.66341	57.48	57.216	57.88	0					55	23	3	0	0	0	0.25499	2	13852	13852;13905		26.268	6.9062	1	1262000	+		34153	14920	19983	19984	41542;41543	41542					0.05492177317432834
PRWAKVDEALA	11	Unmodified	_PRWAKVDEALA_					0	0	0			REV__nc|ENSG00000116260|O00391-2|QSOX1	REV__nc|ENSG00000116260|O00391-2|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	628.3436889648438	2	628.343312	1254.67207	0.13782	8.6595E-05	0.22847	0.00014356	0.36629	0.00023016	628.3434181315338	57.342	0.60579	57.428	57.132	57.738	0.085621					51	21	4	0	0	0	0.28258	1	13801	13801		23.79	7.6407	1	1229800	+		34154	14920	19983	19984	41544	41544					0.05492177317432834
PRWAKVDEALA	11	Unmodified	_PRWAKVDEALA_					0	0	0			REV__nc|ENSG00000116260|O00391-2|QSOX1	REV__nc|ENSG00000116260|O00391-2|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.8450927734375	2	628.343312	1254.67207	0.12067	7.5819E-05	0.2866	0.00018008	0.40726	0.0002559	628.3434649611172	57.561	0.6425	57.544	57.285	57.928	-0.0172					50	23	3	0	0	0	0.28258	1	13879	13879		23.79	1.1317	1	1166600	+		34155	14920	19983	19984	41545	41545					0.05492177317432834
PRWAKVDEALA	11	Unmodified	_PRWAKVDEALA_					0	0	0			REV__nc|ENSG00000116260|O00391-2|QSOX1	REV__nc|ENSG00000116260|O00391-2|QSOX1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	628.343312	1254.67207	0.44529	0.0002798	0.036222	2.276E-05	0.48151	0.00030256	628.343192354976	57.48	0.66341	57.48	57.216	57.88	0	-0.0039631	-0.00020797	NaN	26.268	55	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1262000	+		34156	14920	19983	19984							0.05492177317432834
PRWAKVDEALA	11	Unmodified	_PRWAKVDEALA_					0	0	0			REV__nc|ENSG00000116260|O00391-2|QSOX1	REV__nc|ENSG00000116260|O00391-2|QSOX1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	628.343312	1254.67207	0.13782	8.6595E-05	0.22847	0.00014356	0.36629	0.00023016	628.3434181315338	57.342	0.60579	57.428	57.132	57.738	0.085621	-0.055903	3.3626E-05	NaN	26.268	51	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1229800	+		34157	14920	19983	19984							0.05492177317432834
PRWFKETI	8	Unmodified	_PRWFKETI_					0	0	0			REV__nc|ENSG00000172728|Q6P4F1-3|FUT10	REV__nc|ENSG00000172728|Q6P4F1-3|FUT10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7957153320312	2	538.798009	1075.58147	-0.60146	-0.00032407	3.8909	0.0020964	3.2894	0.0017723	539.3019386511415	34.517	1.269	34.592	33.854	35.123	0.075306					89	45	4	0	0	0	0.40115	1	6923	6923		19.257	0	1	353400	+		34158	17728	19984	19985	41546	41546					0.046697530598066805
PRWIQFRYLFA	11	Unmodified	_PRWIQFRYLFA_					0	0	0			REV__DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant	REV__DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7669677734375	3	499.610223	1495.80884	-0.73092	-0.00036517	-0.79674	-0.00039806	-1.5277	-0.00076323	499.60974791483375	34.41	0.41311	34.485	34.326	34.739	0.075306					22	14	2	0	0	0	0.33296	1	6799	6799		2.6312	2.1253	1	85821	+		34159	13296	19985	19986	41547	41547					0.08076711267813153
PRWPRERRR	9	Unmodified	_PRWPRERRR_					0	0	0			REV__ENST00000278823.6_1_11:62366051-62368981:-|nuORF	REV__ENST00000278823.6_1_11:62366051-62368981:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.9211730957031	3	436.921794	1307.74355	-0.14277	-6.2379E-05	-1.436	-0.00062742	-1.5788	-0.0006898	436.9211615254566	19.143	0.61805	19.027	18.614	19.232	-0.11685					38	21	2	0	0	0	0.35336	1	2152	2152		0.86438	0.35842	1	60497	+		34160	19703	19986	19987	41548	41548					0.10199154585302495
PRWPRERRR	9	Unmodified	_PRWPRERRR_					0	0	0			REV__ENST00000278823.6_1_11:62366051-62368981:-|nuORF	REV__ENST00000278823.6_1_11:62366051-62368981:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	436.921794	1307.74355	-0.2145	-9.3719E-05	-1.6294	-0.00071191	-1.8439	-0.00080563	436.92101693593435	18.938	0.62193	18.938	18.646	19.267	0	-0.037605	-0.00015766	NaN	0.86438	31	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54530	+		34161	19703	19986	19987							0.10199154585302495
PRWPRERRR	9	Unmodified	_PRWPRERRR_					0	0	0			REV__ENST00000278823.6_1_11:62366051-62368981:-|nuORF	REV__ENST00000278823.6_1_11:62366051-62368981:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	436.921794	1307.74355	-0.21249	-9.2843E-05	-1.4683	-0.00064155	-1.6808	-0.00073439	436.921209013186	19.021	0.68564	18.963	18.681	19.366	-0.058172	-0.013093	5.3427E-05	NaN	0.86438	40	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43085	+		34162	19703	19986	19987							0.10199154585302495
PRWSDLSHHR	10	Unmodified	_PRWSDLSHHR_					0	0	0			REV__ENST00000588409.1_1_19:10738400-10738638:+|nuORF	REV__ENST00000588409.1_1_19:10738400-10738638:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.88812255859375	3	430.886527	1289.63775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.235	1	27.235	26.735	27.735	0								0	0	0	0.37807	1	4594	4594		3.0723	2.0587	1		+		34163	22543	19987	19988	41549	41549					0.004517739491802786
PRWTREFTR	9	Unmodified	_PRWTREFTR_					0	0	0			REV__ENST00000374206.3_1_9:116029682-116034747:-|nuORF	REV__ENST00000374206.3_1_9:116029682-116034747:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.2821960449219	3	416.891389	1247.65234	0.21602	9.0059E-05	1.5774	0.00065762	1.7935	0.00074768	416.8922292710657	24.257	0.4458	24.185	23.997	24.443	-0.072559					19	14	2	0	0	0	0.2615	1	3648	3648		2.4985	0	1	50191	+		34164	20457	19988	19989	41550	41550					0.03841846097316193
PRWWWRAGR	9	Unmodified	_PRWWWRAGR_					0	0	0		ENST00000382361.7_1_7:5645533-5645848:+|nuORF	ENST00000382361.7_1_7:5645533-5645848:+|nuORF	ENST00000382361.7_1_7:5645533-5645848:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.5544128417969	3	424.228336	1269.66318	-0.25336	-0.00010748	-3.8589	-0.0016371	-4.1123	-0.0017445	424.22680662903207	23.362	0.41526	23.275	23.018	23.433	-0.08761					24	14	3	0	0	0	0.25992	1	3368	3368		4.5289	0.93237	1	55500			34165	10009	19989	19990	41551	41551					0.03913293262235129
PRWWWRAGR	9	Unmodified	_PRWWWRAGR_					0	0	0		ENST00000382361.7_1_7:5645533-5645848:+|nuORF	ENST00000382361.7_1_7:5645533-5645848:+|nuORF	ENST00000382361.7_1_7:5645533-5645848:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	424.228336	1269.66318	-0.01517	-6.4357E-06	-2.7942	-0.0011854	-2.8094	-0.0011918	424.56107761579983	23.459	0.3083	23.417	23.28	23.589	-0.041862	0.071416	0.00045035	NaN	4.5289	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46327			34166	10009	19989	19990							0.03913293262235129
PRYARPEW	8	Unmodified	_PRYARPEW_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.L681Sfs*33|1|0.27|ENSG00000181222|chr17:7501098-7501098|C/-|frameshift_variant;nc|ENSG00000181222|P24928-2|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.77734375	2	537.777608	1073.54066	0.16403	8.821E-05	-0.37695	-0.00020272	-0.21293	-0.00011451	537.7774065030968	14.268	0.88735	14.202	14.037	14.924	-0.066068					72	31	3	0	0	0	0.45431	1	718	718		4.3292	0.38484	1	813670			34167	7227	19990	19991	41552	41552					0.006834117401695039
PRYGNPHRVI	10	Unmodified	_PRYGNPHRVI_					0	0	0		ENST00000563810.1_1_8:41685974-41686286:-|nuORF	ENST00000563810.1_1_8:41685974-41686286:-|nuORF	ENST00000563810.1_1_8:41685974-41686286:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.22174072265625	3	403.559751	1207.65742	-0.0919	-3.7087E-05	2.0901	0.00084349	1.9982	0.0008064	403.56076095750905	19.971	0.58197	19.855	19.544	20.126	-0.11592					40	19	3	0	0	0	0.32054	1	2442	2442		1.5923	0.37745	1	28342			34168	11934	19991	19992	41553	41553					0.06190149959934388
PRYLKTISS	9	Unmodified	_PRYLKTISS_					0	0	0			REV__ENST00000493450.1_1_20:37659368-37662889:+|nuORF	REV__ENST00000493450.1_1_20:37659368-37662889:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2826538085938	2	532.808574	1063.60259	0.47077	0.00025083	-1.12	-0.00059672	-0.64918	-0.00034589	532.8079733750899	44.956	0.63224	45.025	44.765	45.397	0.068569					38	22	2	0	0	0	0.24471	1	9991	9991		17.113	3.2068	1	233530	+		34169	21638	19992	19993	41554	41554					0.07333718368658992
PRYLKTISS	9	Unmodified	_PRYLKTISS_					0	0	0			REV__ENST00000493450.1_1_20:37659368-37662889:+|nuORF	REV__ENST00000493450.1_1_20:37659368-37662889:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	532.808574	1063.60259	0.62141	0.00033109	-1.1355	-0.00060498	-0.51405	-0.00027389	532.8077622037238	45.1	0.65574	45.1	44.71	45.366	0	0.061889	7.1605E-05	NaN	21.537	35	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209270	+		34170	21638	19992	19993							0.07333718368658992
PRYLKTISS	9	Unmodified	_PRYLKTISS_					0	0	0			REV__ENST00000493450.1_1_20:37659368-37662889:+|nuORF	REV__ENST00000493450.1_1_20:37659368-37662889:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	532.808574	1063.60259	0.62261	0.00033173	-1.3913	-0.0007413	-0.76869	-0.00040957	532.807747818408	44.915	0.56002	44.99	44.808	45.368	0.075047	-0.047963	-0.00020103	NaN	21.537	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261490	+		34171	21638	19992	19993							0.07333718368658992
PRYNHALQLL	10	Unmodified	_PRYNHALQLL_					0	0	0			REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.8996887207031	3	408.899773	1223.67749	0.47644	0.00019482	-0.43167	-0.00017651	0.044766	1.8305E-05	408.89950119979045	36.679	0.60078	36.772	36.486	37.086	0.093018					34	21	2	0	0	0	0.33817	1	7474	7474		8.9762	0.53194	1	369070	+		34172	21052	19993	19994	41555	41555					0.07459900899880267
PRYNHALQLL	10	Unmodified	_PRYNHALQLL_					0	0	0			REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	408.899773	1223.67749	0.12335	5.0436E-05	-0.12153	-4.9694E-05	0.001815	7.4214E-07	408.8995613920517	36.699	0.53073	36.699	36.562	37.093	0	0.032257	1.8973E-05	NaN	8.9762	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257080	+		34173	21052	19993	19994							0.07459900899880267
PRYNHALQLL	10	Unmodified	_PRYNHALQLL_					0	0	0			REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	408.899773	1223.67749	0.19513	7.979E-05	0.15877	6.4921E-05	0.3539	0.00014471	408.89964772539645	36.447	0.8234	36.529	36.233	37.057	0.082355	-0.13783	0.00036282	NaN	8.9762	66	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337270	+		34174	21052	19993	19994							0.07459900899880267
PRYNHALQLL	10	Unmodified	_PRYNHALQLL_					0	0	0			REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	408.899773	1223.67749	0.47644	0.00019482	-0.43167	-0.00017651	0.044766	1.8305E-05	408.89950119979045	36.679	0.60078	36.772	36.486	37.086	0.093018	0.10557	-0.00036148	NaN	8.9762	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369070	+		34175	21052	19993	19994							0.07459900899880267
PRYRKWKQ	8	Unmodified	_PRYRKWKQ_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8533935546875	2	581.335624	1160.6567	-0.077022	-4.4776E-05	2.7426	0.0015944	2.6656	0.0015496	581.3372939519236	13.926	0.33817	13.822	13.685	14.023	-0.10466					20	11	2	0	0	0	0.34437	1	600	600		0.69038	0.16561	1	31284	+		34176	18755	19994	19995	41556	41556					0.082793553108786
PSAAFMIWLIN	11	Unmodified	_PSAAFMIWLIN_					0	0	0			REV__chr1:100719924-100720555|319|49.94|0.57|6.45|+|2|VCAM1,None|1	REV__chr1:100719924-100720555|319|49.94|0.57|6.45|+|2|VCAM1,None|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.2430419921875	3	421.558248	1261.65292	-0.22692	-9.566E-05	1.9226	0.0008105	1.6957	0.00071484	421.55907033666415	15.446	0.45244	15.381	15.216	15.668	-0.064413					26	14	3	0	0	0	0.3299	1	1030	1030		9.7643	3.1408	1	55939	+		34177	13152	19995	19996	41557	41557					0.03255504702156031
PSAFHRLPW	9	Unmodified	_PSAFHRLPW_					0	0	0		ENST00000552197.5_1_12:46661016-46661265:-|nuORF	ENST00000552197.5_1_12:46661016-46661265:-|nuORF	ENST00000552197.5_1_12:46661016-46661265:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.797119140625	2	555.795801	1109.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.9	1	118.9	118.4	119.4	0								0	0	0	0.2672	1	30699	30699		0.52476	0	1				34178	11810	19996	19997	41558	41558					0.026642886369018015
PSALGLRSK	9	Unmodified	_PSALGLRSK_					0	0	0			REV__ENST00000438378.2_1_2:132278034-132278601:+|nuORF	REV__ENST00000438378.2_1_2:132278034-132278601:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.1614990234375	2	464.782359	927.550165	0.003284	1.5263E-06	-0.52969	-0.00024619	-0.5264	-0.00024466	464.78210867977805	24.621	0.31763	24.565	24.344	24.661	-0.055931					18	10	2	0	0	0	0.25123	1	3830	3830		12.241	2.1667	1	68646	+		34179	21027	19997	19998	41559	41559					0.08349180025709302
PSALGLRSK	9	Unmodified	_PSALGLRSK_					0	0	0			REV__ENST00000438378.2_1_2:132278034-132278601:+|nuORF	REV__ENST00000438378.2_1_2:132278034-132278601:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	464.782359	927.550165	-0.075591	-3.5133E-05	-0.55589	-0.00025837	-0.63148	-0.0002935	464.7821005028084	24.454	0.35656	24.454	24.248	24.605	0	-0.074136	-0.00014162	NaN	12.241	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54193	+		34180	21027	19997	19998							0.08349180025709302
PSALGLRSK	9	Unmodified	_PSALGLRSK_					0	0	0			REV__ENST00000438378.2_1_2:132278034-132278601:+|nuORF	REV__ENST00000438378.2_1_2:132278034-132278601:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	464.782359	927.550165	0.010025	4.6595E-06	0.052643	2.4468E-05	0.062668	2.9127E-05	464.78224897482625	24.597	0.33756	24.566	24.344	24.681	-0.031408	0.037399	0.00042406	NaN	12.241	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76698	+		34181	21027	19997	19998							0.08349180025709302
PSALVLTCLP	10	Unmodified	_PSALVLTCLP_					0	0	0		ENST00000481886.5_1_1:33546883-33547063:+|nuORF	ENST00000481886.5_1_1:33546883-33547063:+|nuORF	ENST00000481886.5_1_1:33546883-33547063:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.84747314453125	2	507.288628	1012.5627	0.69823	0.0003542	1.5378	0.00078012	2.236	0.0011343	507.2896035515165	37.291	0.91333	37.291	37.013	37.926	0					77	32	3	0	0	0	0.31267	1	7826	7826		14.838	14.838	1	904480			34182	11037	19998	19999	41560	41560					0.05692455373707617
PSAPKEGR	8	Unmodified	_PSAPKEGR_					0	0	0			REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF	REV__ENST00000462351.5_1_2:220160899-220172331:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.242919921875	2	421.229959	840.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.217	1	15.217	14.717	15.717	0								0	0	0	0.35843	1	960	960		10.824	1.4765	1		+		34183	13584	19999	20000	41561	41561					0.018760585491463644
PSAPMIPI	8	Unmodified	_PSAPMIPI_					0	0	0			REV__nc|ENSG00000087470|O00429-4|DNM1L	REV__nc|ENSG00000087470|O00429-4|DNM1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.26605224609375	2	413.230582	824.446611	0.21881	9.0419E-05	-0.691	-0.00028554	-0.47218	-0.00019512	413.2325932226868	23.318	0.95548	23.273	22.977	23.933	-0.044867					56	33	3	0	0	0	0.33245	1	3465	3465		19.439	0	1	86647	+		34184	13997	20000	20001	41562	41562					0.02736556593674777
PSASRYAALS	10	Unmodified	_PSASRYAALS_					0	0	0		nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;ENST00000261509.10_1_4:169846154-169847533:+|nuORF	nc|ENSG00000129116|Q8WX93-5|PALLD	nc|ENSG00000129116|Q8WX93-5|PALLD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.22674560546875	2	511.766906	1021.51926	0.23354	0.00011952	0.40586	0.00020771	0.6394	0.00032722	511.7672415391378	17.885	0.41078	17.885	17.69	18.1	0					33	13	3	0	0	0	0.255	1	1828	1828		34.402	6.7729	1	67548			34185	12695	20001	20002	41563	41563					0.009359819208043518
PSASRYAALS	10	Unmodified	_PSASRYAALS_					0	0	0		nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;ENST00000261509.10_1_4:169846154-169847533:+|nuORF	nc|ENSG00000129116|Q8WX93-5|PALLD	nc|ENSG00000129116|Q8WX93-5|PALLD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.226806640625	2	511.766906	1021.51926	0.070353	3.6004E-05	0.13085	6.6963E-05	0.2012	0.00010297	511.7674524751907	18.022	0.48771	17.905	17.663	18.151	-0.11739					37	16	3	0	0	0	0.26638	1	1878	1878		30.637	3.0077	1	60109			34186	12695	20001	20002	41564	41564					0.009359819208043518
PSATLFAWR	9	Unmodified	_PSATLFAWR_					0	0	0			REV__ENST00000324679.4_1_14:51134869-51134989:-|nuORF	REV__ENST00000324679.4_1_14:51134869-51134989:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2689208984375	2	524.782359	1047.55016	0.51448	0.00026999	0.41287	0.00021667	0.92735	0.00048666	524.7821661977446	35.721	0.25984	35.807	35.698	35.958	0.08625					12	8	2	0	0	0	0.24688	1	7168	7168		10.074	0	1	104290	+		34187	19987	20002	20003	41565	41565					0.02829180025696587
PSCCQPACCA	10	Unmodified	_PSCCQPACCA_					0	0	0		ENSG00000241123|ENST00000400372|KRTAP10-5	ENSG00000241123|ENST00000400372|KRTAP10-5	ENSG00000241123|ENST00000400372|KRTAP10-5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.6661376953125	2	491.666108	981.317664	0.42755	0.00021021	-0.060011	-2.9505E-05	0.36754	0.00018071	491.66606044146437	26.697	1.7227	26.675	25.97	27.692	-0.022238					82	60	2	0	0	0	0.41892	1	4515	4515		0	0	1	252310			34188	8530	20003	20004	41566	41566					-0.17374232694737657
PSCTQRITWK	10	Unmodified	_PSCTQRITWK_					0	0	0		PSG9|p.E71Kfs*2|1|0.28|ENSG00000183668|chr19:43268007-43268007|T/-|frameshift_variant;nc|ENSG00000183668|Q00887-2|PSG9;ENSG00000183668|ENST00000270077|PSG9	PSG9|p.E71Kfs*2|1|0.28|ENSG00000183668|chr19:43268007-43268007|T/-|frameshift_variant	PSG9|p.E71Kfs*2|1|0.28|ENSG00000183668|chr19:43268007-43268007|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.85247802734375	3	407.213252	1218.61793	-0.38845	-0.00015818	-3.9146	-0.0015941	-4.303	-0.0017522	407.2118120418381	42.408	0.32312	42.408	42.355	42.678	0					15	11	2	0	0	0	0.3179	1	9307	9307		3.3196	1.9901	1	124480			34189	7387	20004	20005	41567	41567					0.017362618941660912
PSEAGLPLGRR	11	Unmodified	_PSEAGLPLGRR_					0	0	0			REV__ENST00000505849.5_1_1:1324040-1326969:-|nuORF	REV__ENST00000505849.5_1_1:1324040-1326969:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.36962890625	2	576.827829	1151.64111	-0.029788	-1.7183E-05	0.59849	0.00034523	0.5687	0.00032804	576.8281983786283	34.32	0.44852	34.32	34.023	34.472	0					24	15	2	0	0	0	0.32996	1	6679	6679		8.1555	4.559	1	131600	+		34190	21745	20005	20006	41568	41568					0.07135024003173385
PSEAGLPLGRR	11	Unmodified	_PSEAGLPLGRR_					0	0	0			REV__ENST00000505849.5_1_1:1324040-1326969:-|nuORF	REV__ENST00000505849.5_1_1:1324040-1326969:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3695068359375	2	576.827829	1151.64111	0.09124	5.263E-05	0.50004	0.00028844	0.59128	0.00034107	576.8282262590948	34.144	0.47382	34.211	34.021	34.495	0.066704					23	16	2	0	0	0	0.32996	1	6669	6669		8.1555	4.559	1	163550	+		34191	21745	20005	20006	41569	41569					0.07135024003173385
PSEDVIDIKPE	11	Unmodified	_PSEDVIDIKPE_					0	0	0		nc|ENSG00000100722|Q6PJT7-10|ZC3H14;nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.8980407714844	3	414.546842	1240.6187	0.11528	4.7789E-05	2.6591	0.0011023	2.7744	0.0011501	414.54752067777633	18.49	0.39814	18.372	18.215	18.614	-0.11739					16	13	2	0	0	0	0.3322	1	1908	1908		4.7159	1.1289	1	30313			34192	12618	20006	20007	41570	41570					0.00801335024243599
PSEILKGEKPQ	11	Unmodified	_PSEILKGEKPQ_					0	0	0		ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0-4|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF;nc|ENSG00000073060|Q8WTV0-5|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1	ENSG00000073060|ENST00000261693|SCARB1	ENSG00000073060|ENST00000261693|SCARB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.2422790527344	3	409.231077	1224.6714	-0.33921	-0.00013881	-2.2212	-0.000909	-2.5604	-0.0010478	409.2301575112339	13.241	0.28233	13.174	13.047	13.329	-0.067496					15	9	2	0	0	0	0.47853	1	394	394		0.92553	0.149	1	38153			34193	996	20007	20008	41571	41571					0.06805337877722195
PSEPARPVLE	10	Unmodified	_PSEPARPVLE_					0	0	0			REV__nc|ENSG00000171680|O94827-4|PLEKHG5	REV__nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3355102539062	2	547.795663	1093.57677	0.27567	0.00015101	0.62219	0.00034083	0.89786	0.00049184	547.7960773919816	22.385	0.57673	22.385	22.16	22.736	0					40	19	3	0	0	0	0.31691	1	3126	3126		9.3831	1.473	1	179270	+		34194	17659	20008	20009	41572	41572					0.03372824126358864
PSETRNVAP	9	Unmodified	_PSETRNVAP_					0	0	0			REV__nc|ENSG00000163704|Q5FWE3-3|PRRT3	REV__nc|ENSG00000163704|Q5FWE3-3|PRRT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.59423828125	2	485.751256	969.487959	0.23733	0.00011528	-0.57091	-0.00027732	-0.33358	-0.00016204	485.7509433942037	24.577	0.6348	24.504	24.267	24.901	-0.072559					34	21	2	0	0	0	0.25938	1	3742	3742		4.3292	0.38484	1	119170	+		34195	17085	20009	20010	41573	41573					0.0019940888670362256
PSFIMVASA	9	Unmodified	_PSFIMVASA_					0	0	0			REV__ENST00000526950.1_1_12:104712789-104714972:+|nuORF	REV__ENST00000526950.1_1_12:104712789-104714972:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.2310485839844	2	461.738771	921.462989	0.23494	0.00010848	0.0059877	2.7648E-06	0.24093	0.00011125	461.7385734227876	66.259	0.44164	66.259	65.955	66.396	0					24	15	2	0	0	0	0.25202	1	16608	16608		10.824	1.4765	1	128400	+		34196	21967	20010	20011	41574	41574					-0.0008836224022843453
PSFKCDFVAGH	11	Unmodified	_PSFKCDFVAGH_					0	0	0			REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.19024658203125	3	403.190336	1206.54918	0.17717	7.1433E-05	-1.4075	-0.00056748	-1.2303	-0.00049605	403.1901458162001	55.835	1.0582	55.816	55.129	56.187	-0.019077					87	38	4	0	0	0	0.41892	1	13367	13367		8.7518	0.59626	1	1545600	+		34197	17225	20011	20012	41575	41575					-0.04583402405501147
PSFMLLFRTQ	10	Unmodified	_PSFMLLFRTQ_					0	0	0		ENST00000540534.5_1_20:62272519-62272642:-|nuORF	ENST00000540534.5_1_20:62272519-62272642:-|nuORF	ENST00000540534.5_1_20:62272519-62272642:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.21453857421875	3	413.889998	1238.64816	-0.071586	-2.9629E-05	3.1741	0.0013137	3.1025	0.0012841	413.8914305705962	17.512	0.59776	17.512	17.122	17.719	0					26	20	2	0	0	0	0.31969	1	1604	1604		5.7834	3.3486	1	54475			34198	11722	20012	20013	41576	41576					0.03838620559395167
PSFQCAALPF	10	Carbamidomethyl (C)	_PSFQC(Carbamidomethyl (C))AALPF_	PSFQC(1)AALPF		PSFQC(46)AALPF		0	1	0			REV__ENST00000545674.5_2_19:36250210-36250693:+|nuORF	REV__ENST00000545674.5_2_19:36250210-36250693:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.2758178710938	2	569.273509	1136.53247	0.20339	0.00011578	2.3167	0.0013189	2.5201	0.0014346	569.2755281402033	30.941	1.2019	30.969	30.693	31.895	0.027946					183	42	7	0	0	0	0.11081	1	5715	5715		45.7	9.5726	1	19365000	+		34199	22163	20013	20014	41577	41577	34				-0.030339032914980635
PSFTKLFDKI	10	Unmodified	_PSFTKLFDKI_					0	0	0			REV__ENST00000535398.5_1_13:111298395-111353838:-|nuORF	REV__ENST00000535398.5_1_13:111298395-111353838:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3397216796875	2	598.339707	1194.66486	0.50054	0.00029949	0.77796	0.00046548	1.2785	0.00076497	598.3397959217904	53.668	1.0998	53.658	53.456	54.556	-0.0096092					63	39	3	0	0	0	0.30978	1	12685	12685		19.362	3.2128	1	654490	+		34200	22066	20014	20015	41578	41578					0.0753144471698306
PSFYLRWEL	9	Unmodified	_PSFYLRWEL_					0	0	0			REV__Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|86|3|sense	REV__Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|86|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.7925415039062	2	605.816399	1209.61824	0.64672	0.00039179	-1.1673	-0.00070718	-0.5206	-0.00031539	605.8157567626977	67.92	0.45411	67.998	67.715	68.169	0.078041					18	15	2	0	0	0	0.25194	1	17091	17091		18.373	0	1	86374	+		34201	22724	20015	20016	41579	41579					0.02182004885708011
PSGAAPCPVVV	11	Unmodified	_PSGAAPCPVVV_					0	0	0			REV__ENSG00000177103|ENST00000651296|DSCAML1	REV__ENSG00000177103|ENST00000651296|DSCAML1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7916564941406	2	498.762778	995.511002	0.56716	0.00028288	0.86579	0.00043183	1.433	0.0007147	498.76330393177284	82.824	0.64021	82.824	82.56	83.2	0					37	23	2	0	0	0	0.32951	1	21582	21582		8.7454	2.985	1	130480	+		34202	17973	20016	20017	41580	41580					0.013067116798310963
PSGGKILRILY	11	Unmodified	_PSGGKILRILY_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8;nc|ENSG00000074603|Q6V1X1-6|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2245178222656	3	406.251924	1215.73394	-0.25148	-0.00010217	-3.1911	-0.0012964	-3.4426	-0.0013985	406.5853045327629	19.078	0.14202	18.96	18.862	19.004	-0.11739					6	4	2	0	0	0	0.33122	1	2132	2132		7.0371	5.582	1	7452.6			34203	1023	20017	20018	41581	41581					0.13470528736570486
PSGGVHTR	8	Unmodified	_PSGGVHTR_					0	0	0			REV__ENST00000301215.7_1_19:42729646-42729958:+|nuORF	REV__ENST00000301215.7_1_19:42729646-42729958:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2245178222656	2	405.714476	809.4144	-0.25989	-0.00010544	1.1438	0.00046405	0.88389	0.00035861	405.7146727309612	19.14	0.36846	19.023	18.89	19.258	-0.11703					15	12	2	0	0	0	0.33245	1	2132	2132		19.439	0	1	33808	+		34204	19819	20018	20019	41582	41582					0.002069052349042977
PSGKQRNPVMQ	11	Unmodified	_PSGKQRNPVMQ_					0	0	0			REV__ENSG00000163961|ENST00000318037|RNF168	REV__ENSG00000163961|ENST00000318037|RNF168	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.8982849121094	3	414.552156	1240.63464	0.078443	3.2519E-05	-0.18315	-7.5926E-05	-0.10471	-4.3408E-05	414.5521512478049	15.966	0.94797	15.904	15.547	16.495	-0.062533					95	32	5	0	0	0	0.33277	1	1137	1137		3.0723	0.98626	1	577650	+		34205	17111	20019	20020	41583	41583					0.023947627801589988
PSHHRGWWR	9	Unmodified	_PSHHRGWWR_					0	0	0		ENST00000343738.10_1_16:15225462-15227850:-|nuORF	ENST00000343738.10_1_16:15225462-15227850:-|nuORF	ENST00000343738.10_1_16:15225462-15227850:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.7851867675781	3	406.872441	1217.59549	-0.013911	-5.6599E-06	-0.95543	-0.00038874	-0.96934	-0.0003944	406.8719963153583	29.227	0.45121	29.24	29.08	29.532	0.012264					34	15	3	0	0	0	0.25938	1	5205	5205		0.20686	0	1	103800			34206	9545	20020	20021	41584	41584					-0.004601566685551006
PSHHRGWWR	9	Unmodified	_PSHHRGWWR_					0	0	0		ENST00000343738.10_1_16:15225462-15227850:-|nuORF	ENST00000343738.10_1_16:15225462-15227850:-|nuORF	ENST00000343738.10_1_16:15225462-15227850:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.78509521484375	3	406.872441	1217.59549	-0.18998	-7.7298E-05	-1.3591	-0.00055297	-1.5491	-0.00063027	406.87205125052503	29.383	0.80689	29.396	28.907	29.714	0.013474					39	28	2	0	0	0	0.25938	1	5246	5246		0.96228	0	1	128370			34207	9545	20020	20021	41585	41585					-0.004601566685551006
PSHLRLFRAL	10	Unmodified	_PSHLRLFRAL_					0	0	0			REV__ENSG00000100078|ENST00000215885|PLA2G3	REV__ENSG00000100078|ENST00000215885|PLA2G3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.9036560058594	3	403.912013	1208.71421	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.322	1	18.263	17.763	18.763	-0.058174								0	0	0	0.37664	1	1895	1895		1.7423	0.41263	1		+		34208	14155	20021	20022	41586	41586					0.11820197516453845
PSHRSSPVGP	10	Unmodified	_PSHRSSPVGP_					0	0	0		ENSG00000165138|ENST00000353234|ANKS6;nc|ENSG00000165138|Q68DC2-4|ANKS6	ENSG00000165138|ENST00000353234|ANKS6	ENSG00000165138|ENST00000353234|ANKS6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2269287109375	2	510.764697	1019.51484	0.082051	4.1909E-05	0.82081	0.00041924	0.90286	0.00046115	510.7650490728645	18.663	0.84639	18.546	18.184	19.03	-0.11739					60	29	3	0	0	0	0.255	1	1923	1923		34.402	5.3201	1	332180			34209	5929	20022	20023	41587	41587					0.00586517497913519
PSIGRMGLLI	10	Unmodified	_PSIGRMGLLI_					0	0	0			REV__ENST00000397174.6_2_1:41493379-41493838:-|nuORF	REV__ENST00000397174.6_2_1:41493379-41493838:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8135986328125	2	528.815344	1055.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.35	1	117.33	116.83	117.83	-0.024147								0	0	0	0.37664	1	30378	30378		3.5965	0.60125	1		+		34210	20667	20023	20024	41588	41588					0.09055252876282793
PSIHKLLV	8	Unmodified	_PSIHKLLV_					0	0	0			REV__nc|ENSG00000100003|O76054-5|SEC14L2	REV__nc|ENSG00000100003|O76054-5|SEC14L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7922058105469	2	453.792195	905.569838	0.24985	0.00011338	-0.1121	-5.0871E-05	0.13774	6.2507E-05	453.7920516815861	62.447	1.3118	62.544	62.2	63.512	0.096985					79	47	3	0	0	0	0.42371	1	15467	15467		14.838	0	1	665350	+		34211	14148	20024	20025	41589	41589					0.11327556036462738
PSISQKEFSW	10	Unmodified	_PSISQKEFSW_					0	0	0		ENST00000436636.6_1_3:170841429-170843734:-|nuORF	ENST00000436636.6_1_3:170841429-170843734:-|nuORF	ENST00000436636.6_1_3:170841429-170843734:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.8009033203125	2	604.800946	1207.58734	0.31812	0.0001924	-0.20653	-0.00012491	0.11159	6.7489E-05	604.8008236941254	63.023	0.70378	63.014	62.705	63.408	-0.0085526					46	25	2	0	0	0	0.35637	1	15559	15559		11.495	11.495	1	461960			34212	10525	20025	20026	41590	41590					-0.008151932191822198
PSISQKEFSW	10	Unmodified	_PSISQKEFSW_					0	0	0		ENST00000436636.6_1_3:170841429-170843734:-|nuORF	ENST00000436636.6_1_3:170841429-170843734:-|nuORF	ENST00000436636.6_1_3:170841429-170843734:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	604.800946	1207.58734	0.58262	0.00035237	-0.87318	-0.0005281	-0.29056	-0.00017573	604.8004929729782	62.974	0.81546	63.069	62.495	63.311	0.095726	0.027687	-0.00045086	NaN	11.495	52	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	483160			34213	10525	20025	20026							-0.008151932191822198
PSIVYMPHI	9	Unmodified	_PSIVYMPHI_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3040771484375	2	528.78097	1055.54739	0.34523	0.00018255	-1.1289	-0.00059694	-0.78366	-0.00041438	529.2801052948304	23.921	0.80487	23.849	23.313	24.118	-0.072559					42	27	2	0	0	0	0.25417	1	3567	3567		8.5933	0	1	118600			34214	2907	20026	20027	41591	41591					0.021835885765312923
PSIYKWMYY	9	Unmodified	_PSIYKWMYY_					0	0	0			REV__ENSG00000072041|ENST00000266682|SLC6A15	REV__ENSG00000072041|ENST00000266682|SLC6A15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.5433044433594	3	417.535332	1249.58417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.232	1	35.309	34.809	35.809	0.077377								0	0	0	0.23628	1	7026	7026		10.8	2.8541	1		+		34215	13750	20027	20028	41592	41592					-0.030641595975339442
PSKGRWLN	8	Unmodified	_PSKGRWLN_					0	0	0		nc|ENSG00000140367|Q8WVN8-2|UBE2Q2	nc|ENSG00000140367|Q8WVN8-2|UBE2Q2	nc|ENSG00000140367|Q8WVN8-2|UBE2Q2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2775573730469	2	479.266876	956.519199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.831	1	72.801	72.301	73.301	-0.029305								0	0	0	0.35663	1	18570	18570		11.64	3.7301	1				34216	12727	20028	20029	41593	41593					0.039200267114551934
PSKLPPMIG	9	Unmodified	_PSKLPPMIG_					0	0	0			REV__ENSG00000196588|ENST00000355630|MRTFA;REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2789611816406	2	470.270238	938.525924	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.086	1	57.067	56.567	57.567	-0.019081								0	0	0	0.19932	1	13745	13745		22.736	7.898	1		+		34217	18666;18439	20029	20030	41594	41594					0.054202035478283506
PSKVLQQLLVL	11	Unmodified	_PSKVLQQLLVL_					0	0	0		ENSG00000163624|ENST00000295887|CDS1	ENSG00000163624|ENST00000295887|CDS1	ENSG00000163624|ENST00000295887|CDS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2576599121094	3	413.267463	1236.78056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.711	1	66.698	66.198	67.198	-0.013588								0	0	0	0.35543	1	16700	16700		7.0371	0.41363	1				34218	5710	20030	20031	41595	41595					0.17163968567842858
PSLARMWFGW	10	Unmodified	_PSLARMWFGW_					0	0	0			REV__ENST00000534797.5_1_11:502881-503247:-|nuORF	REV__ENST00000534797.5_1_11:502881-503247:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.5432434082031	3	417.542821	1249.60663	-0.49486	-0.00020662	1.3928	0.00058153	0.8979	0.00037491	417.5432927351477	35.209	0.82088	35.285	34.713	35.533	0.075306					63	29	4	0	0	0	0.30958	1	7037	7037		12.175	3.7304	1	587960	+		34219	22060	20031	20032	41596	41596					-0.008185154092643643
PSLDTDALSP	10	Unmodified	_PSLDTDALSP_					0	0	0			REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7413330078125	2	508.250754	1014.48696	-0.017279	-8.7818E-06	-1.1694	-0.00059435	-1.1867	-0.00060313	508.749938619005	18.328	0.28728	18.27	18.145	18.432	-0.058174					18	9	3	0	0	0	0.38773	1	1894	1894		5.7319	0	1	41666	+		34220	15670	20032	20033	41597	41597					-0.019708502728576605
PSLEKWPKLIL	11	Unmodified	_PSLEKWPKLIL_					0	0	0			REV__ENST00000584086.5_1_17:26902477-26903857:-|nuORF	REV__ENST00000584086.5_1_17:26902477-26903857:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.2731628417969	3	441.939346	1322.79621	0.099137	4.3812E-05	0.58971	0.00026062	0.68885	0.00030443	441.93969129806726	49.453	1.0459	49.498	48.935	49.981	0.044891					115	38	4	0	0	0	0.33236	1	11306	11306		4.4062	1.0865	1	901720	+		34221	20632	20033	20034	41598	41598					0.1477225508488118
PSLEVRVIL	9	Unmodified	_PSLEVRVIL_					0	0	0			REV__nc|ENSG00000111642|Q14839-2|CHD4	REV__nc|ENSG00000111642|Q14839-2|CHD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7548217773438	2	513.321317	1024.62808	0.41065	0.00021079	-0.13382	-6.8693E-05	0.27682	0.0001421	513.3213014731065	56.754	0.4543	56.754	56.61	57.064	0					21	16	2	0	0	0	0.22596	1	13655	13655		21.747	2.4897	1	129610	+		34222	22942	20034	20035	41599	41599					0.11675192891107145
PSLFPCAPLC	10	Unmodified	_PSLFPCAPLC_					0	0	0		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.277587890625	2	524.253731	1046.49291	-1.0548	-0.00055297	1.1122	0.00058309	0.05746	3.0124E-05	524.254489772211	34.886	0.44012	34.961	34.657	35.097	0.075306					21	15	2	0	0	0	0.31482	1	6875	6875		7.2892	0	1	223600			34223	2721	20035	20036	41600	41600					-0.02847746566544629
PSLIKQQVL	9	Unmodified	_PSLIKQQVL_					0	0	0		ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0-3|SCARB1;nc|ENSG00000073060|Q8WTV0-5|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1;ENST00000539320.2_1_12:125347034-125348347:-|nuORF	ENSG00000073060|ENST00000261693|SCARB1	ENSG00000073060|ENST00000261693|SCARB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.8131713867188	2	513.321317	1024.62808	0.49191	0.00025251	2.3667	0.0012149	2.8587	0.0014674	513.3226549268842	65.652	0.35715	65.652	65.488	65.845	0					18	12	3	0	0	0	0.22674	1	16363	16363		17.113	0	1	240200			34224	996	20036	20037	41601	41601					0.11675192891107145
PSLIKQQVL	9	Unmodified	_PSLIKQQVL_					0	0	0		ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0-3|SCARB1;nc|ENSG00000073060|Q8WTV0-5|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1;ENST00000539320.2_1_12:125347034-125348347:-|nuORF	ENSG00000073060|ENST00000261693|SCARB1	ENSG00000073060|ENST00000261693|SCARB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.8132934570312	2	513.321317	1024.62808	0.37241	0.00019116	2.646	0.0013583	3.0184	0.0015494	513.3229861861261	65.587	0.32094	65.576	65.478	65.799	-0.011337					16	11	2	0	0	0	0.23235	1	16361	16361		21.537	0	1	294480			34225	996	20036	20037	41602	41602					0.11675192891107145
PSLLEEEEEF	10	Unmodified	_PSLLEEEEEF_					0	0	0			REV__ENST00000334146.7_2_17:1617148-1617241:-|nuORF	REV__ENST00000334146.7_2_17:1617148-1617241:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.7794189453125	2	611.279709	1220.54486	0.43667	0.00026693	1.8336	0.0011209	2.2703	0.0013878	611.2824077373506	53.211	0.49956	53.267	53.111	53.611	0.056255					33	18	3	0	0	0	0.31691	1	12557	12557		9.3831	1.2276	1	571760	+		34226	20058	20037	20038	41603	41603					-0.05658633138091318
PSLLHAPA	8	Unmodified	_PSLLHAPA_					0	0	0		ENST00000462251.1_1_19:11877842-11877908:+|nuORF	ENST00000462251.1_1_19:11877842-11877908:+|nuORF	ENST00000462251.1_1_19:11877842-11877908:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.23052978515625	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.689	1	14.689	14.189	15.189	0								0	0	0	0.37595	1	801	801		2.8892	0	1				34227	10755	20038	20039	41604	41604					0.03934148042844754
PSLLRILDI	9	Unmodified	_PSLLRILDI_					0	0	0			REV__ENST00000462798.1_1_1:6592521-6593409:-|nuORF	REV__ENST00000462798.1_1_1:6592521-6593409:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2581176757812	2	520.329142	1038.64373	0.42728	0.00022233	-0.1711	-8.9027E-05	0.25618	0.0001333	520.3297309040148	63.215	2.8808	63.206	61.955	64.836	-0.0085526					155	105	4	0	0	0	0.1939	1	16095	16095		24.021	0	1	2165400	+		34228	16979	20039	20040	41605	41605					0.12595479408128085
PSLPLVAVS	9	Unmodified	_PSLPLVAVS_					0	0	0		ENST00000463753.5_1_3:99396828-99397035:+|nuORF	ENST00000463753.5_1_3:99396828-99397035:+|nuORF	ENST00000463753.5_1_3:99396828-99397035:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7680969238281	2	441.768386	881.522219	-0.0059567	-2.6315E-06	-0.25169	-0.00011119	-0.25765	-0.00011382	441.76807168123884	96.012	0.68619	96.09	95.817	96.503	0.077408					139	61	3	0	0	0	0.31038	1	25666	25666		7.2892	2.5332	1	932960			34229	10772	20040	20041	41606	41606					0.07671857045613706
PSLRGVDAK	9	Unmodified	_PSLRGVDAK_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7615661621094	2	471.771991	941.529429	0.25684	0.00012117	0.05504	2.5966E-05	0.31188	0.00014714	471.77207340808684	21.75	0.2722	21.65	21.471	21.744	-0.10034					15	9	2	0	0	0	0.29176	1	2952	2952		10.074	0.72649	1	40484	+		34230	14358	20041	20042	41607	41607					0.05632589646040742
PSLRGVDAK	9	Unmodified	_PSLRGVDAK_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	471.771991	941.529429	0.10643	5.0211E-05	0.11316	5.3384E-05	0.21959	0.0001036	471.77202804489593	21.551	0.36234	21.551	21.401	21.763	0	-0.049399	2.7452E-05	NaN	10.074	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48459	+		34231	14358	20041	20042							0.05632589646040742
PSLRGVDAK	9	Unmodified	_PSLRGVDAK_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	471.771991	941.529429	0.25684	0.00012117	0.05504	2.5966E-05	0.31188	0.00014714	471.77207340808684	21.75	0.2722	21.65	21.471	21.744	-0.10034	0.049399	-2.7383E-05	NaN	10.074	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40484	+		34232	14358	20041	20042							0.05632589646040742
PSLSRRSLS	9	Unmodified	_PSLSRRSLS_					0	0	0		ENST00000410061.3_1_2:130737311-130737719:+|nuORF	ENST00000410061.3_1_2:130737311-130737719:+|nuORF	ENST00000410061.3_1_2:130737311-130737719:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.24749755859375	2	501.788173	1001.56179	0.17954	9.009E-05	-0.8574	-0.00043023	-0.67786	-0.00034014	501.7875240033717	25.8	0.59189	25.8	25.623	26.215	0					32	20	2	0	0	0	0.24688	1	4124	4124		14.838	4.0143	1	163710			34233	10266	20042	20043	41608	41608					0.06107377049045226
PSLSSRISEF	10	Unmodified	_PSLSSRISEF_					0	0	0		ENST00000314134.3_1_11:45832900-45833176:+|nuORF	ENST00000314134.3_1_11:45832900-45833176:+|nuORF	ENST00000314134.3_1_11:45832900-45833176:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.8135375976562	2	561.793121	1121.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.269	1	85.256	84.756	85.756	-0.01284								0	0	0	0.35216	1	22377	22377		13.906	0.86358	1				34234	9340	20043	20044	41609	41609					0.0157652026375672
PSLYHQKMFE	10	Unmodified	_PSLYHQKMFE_					0	0	0			REV__ENSG00000181552|ENST00000326783|EDDM3B	REV__ENSG00000181552|ENST00000326783|EDDM3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.5711975097656	3	427.209508	1278.60669	-0.28661	-0.00012244	1.4189	0.00060616	1.1323	0.00048372	427.21021722578865	15.949	0.44604	15.835	15.574	16.02	-0.11434					19	14	2	0	0	0	0.32165	1	1116	1116		0.69767	0	1	29522	+		34235	18153	20044	20045	41610	41610					-0.021465601999352657
PSMRILVNL	9	Unmodified	_PSMRILVNL_					0	0	0		nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2681884765625	2	521.807519	1041.60049	0.51368	0.00026804	-2.6807	-0.0013988	-2.167	-0.0011307	521.8062337306845	40.3	0.6241	40.4	40.288	40.912	0.099407					28	22	2	0	0	0	0.25323	1	8667	8667		3.2813	0	1	107710			34236	1575	20045	20046	41611	41611					0.08134966359216378
PSNNVHTSLSH	11	Unmodified	_PSNNVHTSLSH_					0	0	0		ZNF280B|p.N318Mfs*5|1|0.08|ENSG00000275004|chr22:22488446-22488446|T/-|frameshift_variant;ENSG00000275004|ENST00000626650|ZNF280B	ZNF280B|p.N318Mfs*5|1|0.08|ENSG00000275004|chr22:22488446-22488446|T/-|frameshift_variant	ZNF280B|p.N318Mfs*5|1|0.08|ENSG00000275004|chr22:22488446-22488446|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.7891235351562	2	596.788901	1191.56325	0.54301	0.00032406	0.003654	2.1807E-06	0.54667	0.00032624	596.7887881263251	38.474	0.62074	38.565	38.294	38.915	0.090881					58	22	3	0	0	0	0.46969	1	8017	8017		2.086	0	1	1376300			34237	8714	20046	20047	41612	41612					-0.024870336528465486
PSPGAKFK	8	Unmodified	_PSPGAKFK_					0	0	0		ENST00000336617.7_1_13:51483970-51501548:+|nuORF	ENST00000336617.7_1_13:51483970-51501548:+|nuORF	ENST00000336617.7_1_13:51483970-51501548:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.903076171875	2	416.239796	830.465038	-0.10706	-4.4563E-05	1.2127	0.00050478	1.1057	0.00046022	416.23958596629717	17.799	0.45233	17.799	17.598	18.051	0					19	14	2	0	0	0	0.34131	1	1746	1746		7.9102	0	1	15508			34238	9488	20047	20048	41613	41613					0.04302434559906487
PSPGGTTSLVL	11	Unmodified	_PSPGGTTSLVL_					0	0	0			REV__ENSG00000077984|ENST00000480798|CST7	REV__ENSG00000077984|ENST00000480798|CST7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.786376953125	2	514.784764	1027.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.322	1	81.298	80.798	81.798	-0.02404								0	0	0	0.30959	1	21161	21161		17.113	0.1706	1		+		34239	13847	20048	20049	41614	41614					0.04230019377791905
PSPIFDFD	8	Unmodified	_PSPIFDFD_					0	0	0			REV__chr16:53765923-53810140|139|17.22|0.04|8.93|+|1|TE_info:L2a,L2a_dup145821,L2,LINE,donor,-,53765577,53765923|None,FTO|6	REV__chr16:53765923-53810140|139|17.22|0.04|8.93|+|1|TE_info:L2a,L2a_dup145821,L2,LINE,donor,-,53765577,53765923|None,FTO|6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2526550292969	2	469.218726	936.422899	-0.031052	-1.457E-05	-0.89203	-0.00041856	-0.92308	-0.00043313	469.218331587259	25.123	0.46455	25.123	25.011	25.475	0					19	15	2	0	0	0	0.34218	1	3990	3990		9.3474	0	1	31431	+		34240	13183	20049	20050	41615	41615					-0.047855856391493035
PSPLSLCLPAS	11	Unmodified	_PSPLSLCLPAS_					0	0	0		ENST00000361687.8_1_4:107230107-107237153:-|nuORF	ENST00000361687.8_1_4:107230107-107237153:-|nuORF	ENST00000361687.8_1_4:107230107-107237153:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.80810546875	2	542.788992	1083.56343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.602	1	76.57	76.07	77.07	-0.031487								0	0	0	0.31397	1	19722	19722		16.149	3.9084	1				34241	9696	20050	20051	41616	41616					0.02499250022765409
PSPRPESPKS	10	Unmodified	_PSPRPESPKS_					0	0	0			REV__nc|ENSG00000110435|O00330-3|PDHX	REV__nc|ENSG00000110435|O00330-3|PDHX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.28564453125	2	541.285463	1080.55637	0.28531	0.00015443	0.15603	8.4457E-05	0.44134	0.00023889	541.2855644914907	15.294	1.0202	15.184	14.676	15.696	-0.10981					69	35	4	0	0	0	0.3001	1	953	953		20.415	4.2654	1	314280	+		34242	14671	20051	20052	41617	41617					0.019316534665676954
PSPRPESPKS	10	Unmodified	_PSPRPESPKS_					0	0	0			REV__nc|ENSG00000110435|O00330-3|PDHX	REV__nc|ENSG00000110435|O00330-3|PDHX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2857666015625	2	541.285463	1080.55637	0.26657	0.00014429	0.17909	9.6938E-05	0.44565	0.00024123	541.2855192155607	15.288	0.6232	15.223	15.013	15.636	-0.064413					51	20	4	0	0	0	0.3001	1	969	969		20.415	2.0414	1	376600	+		34243	14671	20051	20052	41618	41618					0.019316534665676954
PSPRPESPKS	10	Unmodified	_PSPRPESPKS_					0	0	0			REV__nc|ENSG00000110435|O00330-3|PDHX	REV__nc|ENSG00000110435|O00330-3|PDHX	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.285463	1080.55637	0.18709	0.00010127	0.20607	0.00011154	0.39316	0.00021281	541.2855710142015	15.123	0.72984	15.123	14.949	15.679	0	-0.053596	3.1868E-05	NaN	20.415	54	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376980	+		34244	14671	20051	20052							0.019316534665676954
PSPRPESPKS	10	Unmodified	_PSPRPESPKS_					0	0	0			REV__nc|ENSG00000110435|O00330-3|PDHX	REV__nc|ENSG00000110435|O00330-3|PDHX	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.285463	1080.55637	0.26657	0.00014429	0.17909	9.6938E-05	0.44565	0.00024123	541.2855192155607	15.288	0.6232	15.223	15.013	15.636	-0.064413	0.046475	2.6626E-06	NaN	20.415	51	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376600	+		34245	14671	20051	20052							0.019316534665676954
PSPRPMRHR	9	Unmodified	_PSPRPMRHR_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.8330078125	2	567.309084	1132.60361	0.16093	9.1296E-05	-1.2067	-0.00068455	-1.0457	-0.00059325	567.3084743280946	23.092	0.28859	23.005	22.82	23.108	-0.087608					16	9	2	0	0	0	0.26204	1	3360	3360		1.4819	1.4819	1	53203			34246	6227	20052	20053	41619	41619					0.04261654256561087
PSPSSIFL	8	Unmodified	_PSPSSIFL_					0	0	0		ENST00000373825.6_1_6:35802780-35803047:-|nuORF	ENST00000373825.6_1_6:35802780-35803047:-|nuORF	ENST00000373825.6_1_6:35802780-35803047:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2178955078125	2	424.231636	846.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.407	1	54.407	53.907	54.907	0								0	0	0	0.35251	1	12918	12918		13.508	3.3245	1				34247	9878	20053	20054	41620	41620					0.01935308603140129
PSPSSKFST	9	Unmodified	_PSPSSKFST_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.2525939941406	2	469.234907	936.455261	-0.19437	-9.1204E-05	0.63423	0.0002976	0.43986	0.0002064	469.2353055100748	25.359	0.6808	25.328	24.862	25.543	-0.03141					29	23	2	0	0	0	0.25202	1	4015	4015		10.824	0	1	49403			34248	7185	20054	20055	41621	41621					-0.01550798236121409
PSPTKDRKK	9	Unmodified	_PSPTKDRKK_					0	0	0		ENSG00000071246|ENST00000167106|VASH1	ENSG00000071246|ENST00000167106|VASH1	ENSG00000071246|ENST00000167106|VASH1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8143920898438	2	528.811648	1055.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.83	1	115.85	115.35	116.35	0.018738								0	0	0	0.2575	1	30078	30078		3.9444	0.66309	1				34249	955	20055	20056	41622	41622					0.08316236600171578
PSPVLIKK	8	Unmodified	_PSPVLIKK_					0	0	0		ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	ENSG00000052749|ENST00000370992|RRP12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7740478515625	2	441.294571	880.574589	0.77613	0.0003425	-0.7566	-0.00033388	0.019534	8.6201E-06	441.29415909872415	50.305	0.7544	50.326	50.014	50.768	0.020691					39	27	2	0	0	0	0.34131	1	11772	11772		7.9102	0.62092	1	310050			34250	672	20056	20057	41623	41623					0.12952440179230962
PSPVQAASSPL	11	Unmodified	_PSPVQAASSPL_					0	0	0		ENST00000522816.1_3_14:91686848-91687046:+|nuORF	ENST00000522816.1_3_14:91686848-91687046:+|nuORF	ENST00000522816.1_3_14:91686848-91687046:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7830200195312	2	527.282389	1052.55022	0.50749	0.00026759	-2.1055	-0.0011102	-1.598	-0.00084262	527.7824374152073	89.32	1.258	89.41	88.918	90.176	0.090569					157	82	3	0	0	0	0.41288	1	23655	23655		9.544	2.8208	1	212900			34251	11505	20057	20058	41624	41624					0.026051352350577872
PSPVSAHTLS	10	Unmodified	_PSPVSAHTLS_					0	0	0			REV__ENST00000370267.1_1_1:93811706-93812169:+|nuORF	REV__ENST00000370267.1_1_1:93811706-93812169:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.25494384765625	2	498.261456	994.50836	0.49328	0.00024578	0.068574	3.4168E-05	0.56185	0.00027995	498.26140320423207	36.032	0.45605	36.032	35.8	36.256	0					36	16	3	0	0	0	0.34325	1	7288	7288		13.906	0.39817	1	320240	+		34252	20374	20058	20059	41625	41625					0.01088579546535584
PSQEKRKI	8	Unmodified	_PSQEKRKI_					0	0	0		ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;nc|ENSG00000033867|Q9Y6M7-5|SLC4A7;ENST00000493021.5_1_2:162567177-162757603:+|nuORF;nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10;ENSG00000144290|ENST00000446997|SLC4A10	ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000144290|Q6U841-2|SLC4A10	ENSG00000033867|ENST00000454389|SLC4A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.28045654296875	2	493.293091	984.571629	0.12949	6.3879E-05	-0.70964	-0.00035006	-0.58014	-0.00028618	493.29308524154084	14.863	0.14154	14.753	14.676	14.818	-0.10981					6	4	2	0	0	0	0.43302	1	872	872		11.64	0.81637	1	29438			34253	564;4574	20059	20060	41626	41626					0.07872565054424285
PSQPLHRRALP	11	Unmodified	_PSQPLHRRALP_					0	0	0			REV__ENSG00000214562|ENST00000381697|NUTM2D	REV__ENSG00000214562|ENST00000381697|NUTM2D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.9212951660156	3	424.582556	1270.72584	-0.35937	-0.00015258	-1.3965	-0.00059292	-1.7558	-0.0007455	424.5817874466023	18.456	0.84186	18.398	18.087	18.929	-0.058174					69	29	3	0	0	0	0.33236	1	2051	2051		4.4062	4.4062	1	202660	+		34254	18339	20060	20061	41627	41627					0.1013039453980582
PSQPSKFRFN	10	Unmodified	_PSQPSKFRFN_					0	0	0			REV__ENSG00000197838|ENST00000330436|CYP2A13	REV__ENSG00000197838|ENST00000330436|CYP2A13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.5274658203125	3	403.212128	1206.61456	-0.56411	-0.00022746	-3.3996	-0.0013707	-3.9637	-0.0015982	403.21071392140703	12.421	0.12407	12.353	12.281	12.405	-0.068059					5	3	2	0	0	0	0.32034	1	136	136		4.7159	0.83959	1	8516.1	+		34255	18770	20061	20062	41628	41628					0.019513351118575883
PSRELLQHVER	11	Unmodified	_PSRELLQHVER_					0	0	0		ENST00000563051.1_1_16:780419-781044:-|nuORF;nc|ENSG00000103245|Q9H6Q4-2|CIAO3;ENST00000564285.1_1_16:780419-782521:-|nuORF;nc|ENSG00000103245|Q9H6Q4-3|CIAO3;ENSG00000103245|ENST00000251588|CIAO3	ENST00000563051.1_1_16:780419-781044:-|nuORF	ENST00000563051.1_1_16:780419-781044:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.27471923828125	3	455.252875	1362.7368	-0.050586	-2.3029E-05	-0.034689	-1.5792E-05	-0.085275	-3.8822E-05	455.25272204951835	27.391	0.97408	27.391	26.979	27.954	0					99	33	4	0	0	0	0.45422	1	4546	4546		4.1166	1.4854	1	1065500			34256	1821	20062	20063	41629	41629					0.06993752123412378
PSRKPGSFIK	10	Unmodified	_PSRKPGSFIK_					0	0	0			REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.8043823242188	2	558.82984	1115.64513	0.23778	0.00013288	3.022	0.0016888	3.2598	0.0018217	558.8314847453321	16.687	0.40541	16.624	16.298	16.703	-0.062534					18	13	2	0	0	0	0.31926	1	1347	1347		5.7319	1.7875	1	26600	+		34257	22891	20063	20064	41630	41630					0.09193113496894512
PSRKPPTSI	9	Unmodified	_PSRKPPTSI_					0	0	0		nc|ENSG00000163636|Q15008-4|PSMD6;ENST00000476464.5_1_3:64008316-64008487:-|nuORF	nc|ENSG00000163636|Q15008-4|PSMD6	nc|ENSG00000163636|Q15008-4|PSMD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2671203613281	2	491.787641	981.56073	0.58572	0.00028805	-0.90175	-0.00044347	-0.31603	-0.00015542	491.78710597809334	20.678	0.46777	20.625	20.418	20.886	-0.05291					27	16	2	0	0	0	0.25066	1	2594	2594		11.64	3.7301	1	58247			34258	12799	20064	20065	41631	41631					0.06921162680146153
PSRPPTQL	8	Unmodified	_PSRPPTQL_					0	0	0		ENST00000478776.1_1_9:2646370-2647636:+|nuORF	ENST00000478776.1_1_9:2646370-2647636:+|nuORF	ENST00000478776.1_1_9:2646370-2647636:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.2541198730469	2	448.253434	894.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.276	1	76.245	75.745	76.745	-0.031487								0	0	0	0.35014	1	19623	19623		14.582	0	1				34259	10980	20065	20066	41632	41632					0.04084918100284085
PSRPSAPRPV	10	Unmodified	_PSRPSAPRPV_					0	0	0			REV__ENST00000390545.2_1_14:106109437-106109539:-|nuORF	REV__ENST00000390545.2_1_14:106109437-106109539:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.29345703125	2	532.30399	1062.59343	0.39495	0.00021024	1.7671	0.00094065	2.1621	0.0011509	532.3039248431513	29.507	0.63957	29.519	29.218	29.858	0.012266					43	21	3	0	0	0	0.33104	1	5385	5385		16.149	0.30192	1	118170	+		34260	20583	20066	20067	41633	41633					0.06463369802986563
PSRRVLRDLS	10	Unmodified	_PSRRVLRDLS_					0	0	0			REV__ARVCF|p.G867Afs*24|1|0.11|ENSG00000099889|chr22:19972778-19972778|C/-|frameshift_variant	REV__ARVCF|p.G867Afs*24|1|0.11|ENSG00000099889|chr22:19972778-19972778|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	400.24029541015625	3	400.238678	1197.6942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.707	1	94.705	94.205	95.205	-0.0020142								0	0	0	0.38104	1	25273	25273		1.7423	0	1		+		34261	13116	20067	20068	41634	41634					0.10326401785846429
PSRSMPAAL	9	Unmodified	_PSRSMPAAL_					0	0	0			REV__ENSG00000221900|ENST00000408890|POM121L12	REV__ENSG00000221900|ENST00000408890|POM121L12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2380065917969	2	465.247295	928.480036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.281	1	22.232	21.732	22.732	-0.049377								0	0	0	0.20639	1	3096	3096		20.454	3.3671	1		+		34262	19097	20068	20069	41635	41635					0.012935583655803384
PSRSPFSK	8	Unmodified	_PSRSPFSK_					0	0	0			REV__ENSG00000003987|ENST00000180173|MTMR7	REV__ENSG00000003987|ENST00000180173|MTMR7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.9330139160156	2	453.245609	904.476666	0.093666	4.2454E-05	-0.54165	-0.0002455	-0.44799	-0.00020305	453.2452557394616	33.328	0.7145	33.328	33.065	33.78	0					45	25	3	0	0	0	0.3425	1	6551	6551		9.3831	2.0939	1	376190	+		34263	13327	20069	20070	41636	41636					0.020606315832424116
PSRTPPSKRLF	11	Unmodified	_PSRTPPSKRLF_					0	0	0		ENST00000360547.9_1_15:81601214-81601322:+|nuORF	ENST00000360547.9_1_15:81601214-81601322:+|nuORF	ENST00000360547.9_1_15:81601214-81601322:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.2507019042969	3	429.250695	1284.73025	0.038774	1.6644E-05	-0.35957	-0.00015435	-0.32079	-0.0001377	429.2509589343227	50.166	1.7557	50.166	49.701	51.456	0					221	64	6	0	0	0	0.2454	3	11693	11550;11650;11693		27.129	2.9002	1	33589000			34264	9681	20070	20071	41637;41638;41639	41639					0.09927858962691971
PSRTPPSKRLF	11	Unmodified	_PSRTPPSKRLF_					0	0	0		ENST00000360547.9_1_15:81601214-81601322:+|nuORF	ENST00000360547.9_1_15:81601214-81601322:+|nuORF	ENST00000360547.9_1_15:81601214-81601322:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.2506408691406	3	429.250695	1284.73025	0.35376	0.00015185	-0.64564	-0.00027714	-0.29187	-0.00012529	429.2508661638446	50.137	1.7778	50.182	49.749	51.526	0.044891					219	66	6	0	0	0	0.2454	3	11678	11585;11634;11678		27.129	1.8153	1	31897000			34265	9681	20070	20071	41640;41641;41642	41642					0.09927858962691971
PSRTPPSKRLF	11	Unmodified	_PSRTPPSKRLF_					0	0	0		ENST00000360547.9_1_15:81601214-81601322:+|nuORF	ENST00000360547.9_1_15:81601214-81601322:+|nuORF	ENST00000360547.9_1_15:81601214-81601322:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.2511901855469	3	429.250695	1284.73025	0.39706	0.00017044	-0.72583	-0.00031156	-0.32877	-0.00014112	429.2508390552716	50.147	1.8253	50.168	49.746	51.572	0.020695					236	68	6	0	0	0	0.2454	3	11640	11542;11592;11640		27.129	6.3022	1	32127000			34266	9681	20070	20071	41643;41644;41645	41645					0.09927858962691971
PSRTRRWRAR	10	Unmodified	_PSRTRRWRAR_					0	0	0		ENST00000435633.5_1_3:40498984-40499209:+|nuORF	ENST00000435633.5_1_3:40498984-40499209:+|nuORF	ENST00000435633.5_1_3:40498984-40499209:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2517395019531	3	447.928949	1340.76502	0.617	0.00027637	0.29031	0.00013004	0.90731	0.00040641	447.9291352068358	50.482	0.57706	50.482	50.241	50.818	0					64	20	4	0	0	0	0.38952	1	11652	11652		5.4027	5.4027	1	1165600			34267	10511	20071	20072	41646	41646					0.10826539614004105
PSRTRRWRAR	10	Unmodified	_PSRTRRWRAR_					0	0	0		ENST00000435633.5_1_3:40498984-40499209:+|nuORF	ENST00000435633.5_1_3:40498984-40499209:+|nuORF	ENST00000435633.5_1_3:40498984-40499209:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.2516784667969	3	447.928949	1340.76502	0.80135	0.00035895	0.032158	1.4404E-05	0.83351	0.00037335	447.9290393457375	50.493	0.60617	50.538	50.292	50.898	0.044891					62	21	4	0	0	0	0.38952	1	11676	11676		5.4027	5.4027	1	1269500			34268	10511	20071	20072	41647	41647					0.10826539614004105
PSRTRRWRAR	10	Unmodified	_PSRTRRWRAR_					0	0	0		ENST00000435633.5_1_3:40498984-40499209:+|nuORF	ENST00000435633.5_1_3:40498984-40499209:+|nuORF	ENST00000435633.5_1_3:40498984-40499209:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.251708984375	3	447.928949	1340.76502	0.89482	0.00040082	0.018641	8.3498E-06	0.91346	0.00040917	447.9290308156068	50.539	0.72075	50.559	50.281	51.002	0.020691					74	26	4	0	0	0	0.38952	1	11681	11681		5.4027	5.4027	1	1186600			34269	10511	20071	20072	41648	41648					0.10826539614004105
PSSFVRYHRY	10	Unmodified	_PSSFVRYHRY_					0	0	0			REV__ENST00000515408.5_1_5:112353398-112353584:+|nuORF	REV__ENST00000515408.5_1_5:112353398-112353584:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.89093017578125	3	437.891278	1310.652	-0.26598	-0.00011647	-0.66864	-0.00029279	-0.93462	-0.00040926	437.89103632411985	14.853	0.55641	14.788	14.485	15.041	-0.064414					44	19	3	0	0	0	0.36279	1	831	831		10.315	2.8862	1	155460	+		34270	21843	20072	20073	41649	41649					0.00910426377481599
PSSKKKDK	8	Unmodified	_PSSKKKDK_					0	0	0		ENSG00000182552|ENST00000326397|RWDD4;nc|ENSG00000182552|Q6NW29-2|RWDD4;ENST00000426392.1_1_7:39894095-39894470:-|nuORF	ENSG00000182552|ENST00000326397|RWDD4	ENSG00000182552|ENST00000326397|RWDD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.75872802734375	2	459.274367	916.53418	-0.13308	-6.1119E-05	-0.17477	-8.027E-05	-0.30785	-0.00014139	459.274219723106	22.671	0.11388	22.671	22.594	22.708	0					5	3	2	0	0	0	0.34247	1	3193	3193		8.5933	1.304	1	14407			34271	7300	20073	20074	41650	41650					0.07257473788808966
PSSLDPFF	8	Unmodified	_PSSLDPFF_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2430725097656	2	455.221268	908.427984	0.065225	2.9692E-05	0.1532	6.9741E-05	0.21843	9.9433E-05	455.2214924533303	28.735	0.58737	28.735	28.418	29.006	0					34	20	2	0	0	0	0.34218	1	5055	5055		9.3474	0	1	129900			34272	1286	20074	20075	41651	41651					-0.02989281776513053
PSSPRNVI	8	Unmodified	_PSSPRNVI_					0	0	0		ENSG00000044524|ENST00000336596|EPHA3;EPHA3|p.K662Sfs*35|1|0.22|ENSG00000044524|chr3:89419298-89419298|A/-|frameshift_variant;nc|ENSG00000044524|P29320-2|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	ENSG00000044524|ENST00000336596|EPHA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.78070068359375	2	435.245609	868.476666	-0.20544	-8.9418E-05	1.6196	0.00070493	1.4142	0.00061551	435.24685521369724	31.504	0.39117	31.546	31.209	31.6	0.042364					17	13	2	0	0	0	0.34313	1	5865	5865		6.7232	1.9672	1	152200			34273	622	20075	20076	41652	41652					0.03716631583245089
PSSPTLVL	8	Unmodified	_PSSPTLVL_					0	0	0		ENST00000540651.5_1_1:228286331-228286595:+|nuORF	ENST00000540651.5_1_1:228286331-228286595:+|nuORF	ENST00000540651.5_1_1:228286331-228286595:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.7407531738281	2	407.239461	812.46437	-0.034625	-1.4101E-05	0.047791	1.9462E-05	0.013165	5.3614E-06	407.23953328017564	71.269	0.48386	71.269	71.098	71.582	0					20	16	2	0	0	0	0.23581	1	18110	18110		38.151	0	1	175820			34274	11724	20076	20077	41653	41653					0.05063595120202535
PSSPYTWL	8	Unmodified	_PSSPYTWL_					0	0	0		ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.2358093261719	2	475.734543	949.454533	0.043552	2.0719E-05	0.4816	0.00022911	0.52515	0.00024983	475.73527300377276	15.508	0.69492	15.398	15.204	15.899	-0.10982					39	23	2	0	0	0	0.45169	1	1025	1025		5.2307	0.47466	1	75561			34275	5700	20077	20078	41654	41654					-0.022215928851892386
PSSPYTWL	8	Unmodified	_PSSPYTWL_					0	0	0		ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	475.734543	949.454533	-0.09914	-4.7164E-05	0.56088	0.00026683	0.46174	0.00021967	475.7354641888834	15.652	0.71455	15.652	15.232	15.947	0	0.12704	3.6891E-05	NaN	5.2307	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86605			34276	5700	20077	20078							-0.022215928851892386
PSSRAAPEL	9	Unmodified	_PSSRAAPEL_					0	0	0		ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-4|CLCN2;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7926330566406	2	464.248349	926.482145	-0.10611	-4.926E-05	-0.050068	-2.3244E-05	-0.15617	-7.2504E-05	464.24840965032797	25.594	0.7317	25.563	25.126	25.858	-0.031408					53	25	3	0	0	0	0.23749	1	4156	4156		20.415	0	1	284140			34277	2589	20078	20079	41655	41655					0.01596310375032317
PSSTAPISVAS	11	Unmodified	_PSSTAPISVAS_					0	0	0			REV__ENST00000436521.1_3_6:35410881-35414311:+|nuORF	REV__ENST00000436521.1_3_6:35410881-35414311:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7664489746094	2	508.766571	1015.51859	0.32913	0.00016745	0.56909	0.00028953	0.89821	0.00045698	508.7667065373276	17.075	0.91248	17.015	16.676	17.588	-0.060429					91	32	4	0	0	0	0.44828	1	1438	1438		4.897	0	1	390180	+		34278	21007	20079	20080	41656	41656					0.011451424810957178
PSSWKPHF	8	Unmodified	_PSSWKPHF_					0	0	0		ENST00000481273.5_1_6:43099824-43099899:+|nuORF	ENST00000481273.5_1_6:43099824-43099899:+|nuORF	ENST00000481273.5_1_6:43099824-43099899:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.27874755859375	2	493.248152	984.481751	0.44855	0.00022125	0.38483	0.00018982	0.83339	0.00041107	493.2483643993849	31.918	0.84663	31.961	31.458	32.305	0.042364					51	29	2	0	0	0	0.28969	1	5943	5943		36.044	1.8569	1	547860			34279	11026	20080	20081	41657	41657					-0.01111064554152108
PSTKNIVSSS	10	Unmodified	_PSTKNIVSSS_					0	0	0			REV__ENST00000361997.9_1_8:133790074-133829825:+|nuORF	REV__ENST00000361997.9_1_8:133790074-133829825:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.885498046875	2	510.272021	1018.52949	0.22798	0.00011633	2.0696	0.001056	2.2975	0.0011724	510.27265759900644	93.114	0.40904	93.114	92.882	93.291	0					53	35	2	0	0	0	0.32033	1	24773	24773		3.5965	0.70727	1	61063	+		34280	15408	20081	20082	41658	41658					0.020965448553738497
PSTLLLEKT	9	Unmodified	_PSTLLLEKT_					0	0	0			REV__ENST00000378249.5_1_10:14977545-14995911:-|nuORF	REV__ENST00000378249.5_1_10:14977545-14995911:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.78900146484375	2	501.297507	1000.58046	0.015946	7.9937E-06	4.2006	0.0021058	4.2166	0.0021138	501.29996590321895	13.234	0.33388	13.234	13.031	13.365	0					35	11	4	0	0	0	0.33276	1	329	329		3.9444	0.3479	1	200480	+		34281	16577	20082	20083	41659	41659					0.08019493900224006
PSTLVKCLY	9	Unmodified	_PSTLVKCLY_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000426414.6_1_4:85730999-85781744:-|nuORF;WDFY3|p.P225Ifs*14|1|0.04|ENSG00000163625|chr4:84831504-84831510|GGGAGGG/-|frameshift_variant;WDFY3|p.K581Sfs*10|1|0.22|ENSG00000163625|chr4:84817537-84817537|T/-|frameshift_variant	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2811889648438	2	512.280803	1022.54705	0.37538	0.0001923	-0.69827	-0.00035771	-0.32289	-0.00016541	512.280612545404	76.42	2.8719	76.389	75.525	78.397	-0.031487					153	105	3	0	0	0	0.25989	1	19620	19620		14.838	3.198	1	1498000			34282	5711	20083	20084	41660	41660					0.036681688566886805
PSTMTSRCWSW	11	Unmodified	_PSTMTSRCWSW_					0	0	0		ST14|p.G638Afs*124|1|0.24|ENSG00000149418|chr11:130200054-130200054|G/-|frameshift_variant	ST14|p.G638Afs*124|1|0.24|ENSG00000149418|chr11:130200054-130200054|G/-|frameshift_variant	ST14|p.G638Afs*124|1|0.24|ENSG00000149418|chr11:130200054-130200054|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.6666259765625	3	447.862002	1340.56418	0.43509	0.00019486	-0.42154	-0.00018879	0.013544	6.0661E-06	447.86186409808624	29.465	0.76537	29.465	29.035	29.801	0					32	27	2	0	0	0	0.33236	1	5332	5332		4.4062	3.6296	1	113110			34283	23381	20084	20085	41661	41661					-0.09248278599829973
PSTRTCRTWKI	11	Unmodified	_PSTRTCRTWKI_					0	0	0		ENST00000569152.1_1_15:75942404-75949317:+|nuORF	ENST00000569152.1_1_15:75942404-75949317:+|nuORF	ENST00000569152.1_1_15:75942404-75949317:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2691345214844	3	450.243323	1347.70814	0.16	7.2039E-05	-0.83659	-0.00037667	-0.67659	-0.00030463	450.24287720666786	30.729	0.45744	30.757	30.439	30.896	0.027946					31	14	3	0	0	0	0.3322	1	5603	5603		4.7159	2.2811	1	105900			34284	12007	20085	20086	41662	41662					0.04819311222604483
PSTWLPWSFCY	11	Unmodified	_PSTWLPWSFCY_					0	0	0			REV__ENST00000597279.5_1_19:48829275-48830811:+|nuORF	REV__ENST00000597279.5_1_19:48829275-48830811:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.2872619628906	3	462.877758	1385.61144	0.2011	9.3083E-05	1.4845	0.00068714	1.6856	0.00078023	462.8785065282424	45.406	0.65704	45.406	45.175	45.832	0					41	23	3	0	0	0	0.33287	1	10173	10173		2.8433	0.93691	1	390260	+		34285	22608	20086	20087	41663	41663					-0.06593676057150333
PSTWPLWAP	9	Unmodified	_PSTWPLWAP_					0	0	0		nc|ENSG00000164638|Q7RTT9-2|SLC29A4	nc|ENSG00000164638|Q7RTT9-2|SLC29A4	nc|ENSG00000164638|Q7RTT9-2|SLC29A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2833862304688	2	527.77146	1053.52837	0.22479	0.00011864	0.78993	0.0004169	1.0147	0.00053554	527.7721998674605	16.014	0.849	15.9	15.513	16.362	-0.11434					56	28	3	0	0	0	0.25526	1	1313	1313		7.9102	2.1497	1	96289			34286	12806	20087	20088	41664	41664					0.0037437527712427254
PSTYFYGKF	9	Unmodified	_PSTYFYGKF_					0	0	0		ENST00000341633.9_2_16:3551012-3554804:+|nuORF	ENST00000341633.9_2_16:3551012-3554804:+|nuORF	ENST00000341633.9_2_16:3551012-3554804:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2686157226562	2	555.26875	1108.52295	0.34729	0.00019284	0.30216	0.00016778	0.64946	0.00036062	555.268635067978	71.157	1.075	71.132	70.666	71.741	-0.024864					120	38	5	0	0	0	0.26612	1	18125	18125		13.906	0	1	2413800			34287	9526	20088	20089	41665	41665					-0.026973483053325253
PSVFYKQIL	9	Unmodified	_PSVFYKQIL_					0	0	0			REV__ENSG00000007314|ENST00000435607|SCN4A	REV__ENSG00000007314|ENST00000435607|SCN4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7471313476562	2	547.815867	1093.61718	0.52583	0.00028806	-0.12155	-6.6588E-05	0.40428	0.00022147	547.815709007119	76.087	0.85119	76.055	75.803	76.654	-0.031479					70	30	3	0	0	0	0.24289	1	19720	19720		18.146	7.3224	1	709940	+		34288	13384	20089	20090	41666	41666					0.07411790516812289
PSVKNDPLS	9	Unmodified	_PSVKNDPLS_					0	0	0		ENSG00000135968|ENST00000309863|GCC2;GCC2|p.V1325Sfs*7|1|0.29|ENSG00000135968|chr2:108487741-108487741|G/-|frameshift_variant	ENSG00000135968|ENST00000309863|GCC2	ENSG00000135968|ENST00000309863|GCC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.74346923828125	2	478.756007	955.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.923	1	21.874	21.374	22.374	-0.049377								0	0	0	0.20238	1	2987	2987		21.747	6.9084	1				34289	3929	20090	20091	41667	41667					0.01793177172248761
PSVLAARTLGS	11	Unmodified	_PSVLAARTLGS_					0	0	0			REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.3121337890625	2	536.31148	1070.60841	0.55832	0.00029943	0.46877	0.00025141	1.0271	0.00055084	536.3115907920708	88.147	0.71482	88.144	87.868	88.583	-0.0028381					95	36	4	0	0	0	0.44828	1	23311	23311		4.897	0.141	1	711040	+		34290	23151	20091	20092	41668	41668					0.07592816880332975
PSVLLLTDLY	10	Unmodified	_PSVLLLTDLY_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.F1622Lfs*17|1|0.09|ENSG00000120800|chr12:101346566-101346567|-/TTTAGTATCGTATTCTC|frameshift_variant	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.7771606445312	2	567.326265	1132.63798	0.24314	0.00013794	-3.3782	-0.0019165	-3.1351	-0.0017786	567.3250766214273	17.522	0.59735	17.462	17.079	17.676	-0.060429					31	20	2	0	0	0	0.32033	1	1687	1687		3.5965	0.60125	1	27782			34291	2965	20092	20093	41669	41669					0.07696336105800583
PSVLVRVLQLM	11	Unmodified	_PSVLVRVLQLM_					0	0	0			REV__nc|ENSG00000138768|O60763-2|USO1	REV__nc|ENSG00000138768|O60763-2|USO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.88525390625	2	627.883758	1253.75296	0.40485	0.0002542	0.67573	0.00042428	1.0806	0.00067848	627.8850509192164	91.756	1.3726	91.756	91.193	92.566	0.00046539					234	91	3	0	0	0	0.39802	1	24418	24418		11.495	3.3392	1	1124300	+		34292	23012	20093	20094	41670	41670					0.13623742035974828
PSVPGTHL	8	Unmodified	_PSVPGTHL_					0	0	0			REV__ENST00000534677.1_1_11:57472348-57479651:-|nuORF	REV__ENST00000534677.1_1_11:57472348-57479651:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.565185546875	2	404.221603	806.428653	-0.59824	-0.00024182	-1.4212	-0.00057448	-2.0194	-0.0008163	404.2212287078818	34.411	0.314	34.489	34.39	34.704	0.077377					20	10	3	0	0	0	0.31375	1	6817	6817		19.439	0	1	79855	+		34293	22057	20094	20095	41671	41671					0.017695576631808763
PSVPVFLEV	9	Unmodified	_PSVPVFLEV_					0	0	0		ENST00000533557.5_1_11:66281964-66290643:+|nuORF;ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1	ENST00000533557.5_1_11:66281964-66290643:+|nuORF	ENST00000533557.5_1_11:66281964-66290643:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7818603515625	2	493.781493	985.548434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.283	1	81.283	80.783	81.783	0								0	0	0	0.11063	1	21166	21166		43.858	14.777	1				34294	6798	20095	20096	41672	41672					0.055081262171029266
PSVPVFLEV	9	Unmodified	_PSVPVFLEV_					0	0	0		ENST00000533557.5_1_11:66281964-66290643:+|nuORF;ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1	ENST00000533557.5_1_11:66281964-66290643:+|nuORF	ENST00000533557.5_1_11:66281964-66290643:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7817077636719	2	493.781493	985.548434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.427	1	81.427	80.927	81.927	0								0	0	0	0.0067712	1	21211	21211		85.272	14.556	1				34295	6798	20095	20096	41673	41673					0.055081262171029266
PSVPVFLEV	9	Unmodified	_PSVPVFLEV_					0	0	0		ENST00000533557.5_1_11:66281964-66290643:+|nuORF;ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1	ENST00000533557.5_1_11:66281964-66290643:+|nuORF	ENST00000533557.5_1_11:66281964-66290643:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.78167724609375	2	493.781493	985.548434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.213	1	81.282	80.782	81.782	0.068993								0	0	0	0.0067712	1	21135	21135		85.272	36.926	1				34296	6798	20095	20096	41674	41674					0.055081262171029266
PSVPVFLEV	9	Unmodified	_PSVPVFLEV_					0	0	0		ENST00000533557.5_1_11:66281964-66290643:+|nuORF;ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1	ENST00000533557.5_1_11:66281964-66290643:+|nuORF	ENST00000533557.5_1_11:66281964-66290643:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.78167724609375	2	493.781493	985.548434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.348	1	81.417	80.917	81.917	0.068993								0	0	0	0.0067712	1	21177	21177		85.272	14.556	1				34297	6798	20095	20096	41675	41675					0.055081262171029266
PSVPVFLEV	9	Unmodified	_PSVPVFLEV_					0	0	0		ENST00000533557.5_1_11:66281964-66290643:+|nuORF;ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1	ENST00000533557.5_1_11:66281964-66290643:+|nuORF	ENST00000533557.5_1_11:66281964-66290643:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.781494140625	2	493.781493	985.548434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.315	1	81.291	80.791	81.791	-0.02404								0	0	0	0.065718	1	21159	21159		56.177	18.203	1				34298	6798	20095	20096	41676	41676					0.055081262171029266
PSVPVFLEV	9	Unmodified	_PSVPVFLEV_					0	0	0		ENST00000533557.5_1_11:66281964-66290643:+|nuORF;ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1	ENST00000533557.5_1_11:66281964-66290643:+|nuORF	ENST00000533557.5_1_11:66281964-66290643:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7816467285156	2	493.781493	985.548434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.357	1	81.333	80.833	81.833	-0.02404								0	0	0	0.048469	1	21170	21170		61.357	6.5839	1				34299	6798	20095	20096	41677	41677					0.055081262171029266
PSVPVFLEV	9	Unmodified	_PSVPVFLEV_					0	0	0		ENST00000533557.5_1_11:66281964-66290643:+|nuORF;ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1	ENST00000533557.5_1_11:66281964-66290643:+|nuORF	ENST00000533557.5_1_11:66281964-66290643:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7815856933594	2	493.781493	985.548434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.464	1	81.44	80.94	81.94	-0.02404								0	0	0	0.011479	1	21203	21203		78.149	7.4339	1				34300	6798	20095	20096	41678	41678					0.055081262171029266
PSVRGNLEL	9	Unmodified	_PSVRGNLEL_					0	0	0		ENST00000531243.2_1_1:40041622-40042411:-|nuORF	ENST00000531243.2_1_1:40041622-40042411:-|nuORF	ENST00000531243.2_1_1:40041622-40042411:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.7774963378906	2	492.777274	983.539994	-0.012233	-6.028E-06	0.31897	0.00015718	0.30674	0.00015115	492.77734864278796	38.891	0.91316	38.891	38.597	39.51	0					76	32	3	0	0	0	0.18208	1	8216	8216		26.268	0.24744	1	1547300			34301	11625	20096	20097	41679	41679					0.04756572300470907
PSVRPFMMM	9	Unmodified	_PSVRPFMMM_					0	0	0			REV__ENSG00000133124|ENST00000372129|IRS4	REV__ENSG00000133124|ENST00000372129|IRS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.81591796875	2	548.261033	1094.50751	0.16728	9.1716E-05	-2.5819	-0.0014155	-2.4146	-0.0013238	548.2600553998574	75.798	1.1592	75.798	75.315	76.474	0					57	41	2	0	0	0	0.22596	1	19576	19576		21.747	3.6117	1	602220	+		34302	15610	20097	20098	41680	41680					-0.035959976900358015
PSVSHKRT	8	Unmodified	_PSVSHKRT_					0	0	0			REV__ENSG00000135378|ENST00000257836|PRRG4	REV__ENSG00000135378|ENST00000257836|PRRG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.27459716796875	2	456.256508	910.498464	0.24266	0.00011071	0.59873	0.00027317	0.84139	0.00038389	456.25689662988043	20.84	0.20269	20.84	20.65	20.853	0					9	6	2	0	0	0	0.34092	1	2652	2652		13.508	1.8676	1	47346	+		34303	15738	20098	20099	41681	41681					0.039634363317986754
PSVSIPSSDEH	11	Unmodified	_PSVSIPSSDEH_					0	0	0		nc|ENSG00000288602|Q96BR1-2|SGK3;ENSG00000104205|ENST00000521198|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	nc|ENSG00000288602|Q96BR1-2|SGK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.7684936523438	2	577.769842	1153.52513	-0.0091577	-5.291E-06	-0.53688	-0.00031019	-0.54604	-0.00031548	577.7691369904237	30.435	0.89544	30.463	29.838	30.733	0.027157					47	30	3	0	0	0	0.39234	1	5537	5537		12.241	1.4167	1	328640			34304	1871	20099	20100	41682	41682					-0.0454896435817318
PSVSVHGRQRL	11	Unmodified	_PSVSVHGRQRL_					0	0	0			REV__ENST00000436336.6_1_7:99042451-99045774:+|nuORF	REV__ENST00000436336.6_1_7:99042451-99045774:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.9150085449219	3	412.570427	1234.68945	0.22065	9.1034E-05	2.1091	0.00087015	2.3298	0.00096119	412.5717016962978	32.272	1.0277	32.327	31.903	32.931	0.054375					128	36	5	0	0	0	0.3826	1	6219	6219		13.519	3.7544	1	1062800	+		34305	21004	20100	20101	41683	41683					0.0814951764309626
PSVSVHGRQRL	11	Unmodified	_PSVSVHGRQRL_					0	0	0			REV__ENST00000436336.6_1_7:99042451-99045774:+|nuORF	REV__ENST00000436336.6_1_7:99042451-99045774:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	412.570427	1234.68945	0.18213	7.5142E-05	2.3646	0.00097558	2.5468	0.0010507	412.57173704791063	32.238	1.1397	32.238	31.925	33.065	0	0.0047186	0.00028303	NaN	13.519	121	40	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	946140	+		34306	21004	20100	20101							0.0814951764309626
PSVSVHGRQRL	11	Unmodified	_PSVSVHGRQRL_					0	0	0			REV__ENST00000436336.6_1_7:99042451-99045774:+|nuORF	REV__ENST00000436336.6_1_7:99042451-99045774:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	412.570427	1234.68945	0.52846	0.00021803	1.8923	0.00078072	2.4208	0.00099875	412.57151674458754	32.092	0.89605	32.135	31.795	32.691	0.042362	-0.098244	-0.00030153	NaN	13.519	110	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	996590	+		34307	21004	20100	20101							0.0814951764309626
PSVSVHGRQRL	11	Unmodified	_PSVSVHGRQRL_					0	0	0			REV__ENST00000436336.6_1_7:99042451-99045774:+|nuORF	REV__ENST00000436336.6_1_7:99042451-99045774:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	412.570427	1234.68945	0.22065	9.1034E-05	2.1091	0.00087015	2.3298	0.00096119	412.5717016962978	32.272	1.0277	32.327	31.903	32.931	0.054375	0.093526	-3.3241E-05	NaN	13.519	128	36	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1062800	+		34308	21004	20100	20101							0.0814951764309626
PSVTIDHRV	9	Unmodified	_PSVTIDHRV_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2816162109375	2	512.282723	1022.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.276	1	76.276	75.776	76.776	0								0	0	0	0.19013	1	19635	19635		25.399	9.5521	1		+		34309	13406	20101	20102	41684	41684					0.0405197467475773
PSWPDWTVAF	10	Unmodified	_PSWPDWTVAF_					0	0	0			REV__ENST00000489881.5_1_3:15455665-15457401:-|nuORF	REV__ENST00000489881.5_1_3:15455665-15457401:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.2852783203125	2	603.284931	1204.55531	0.12803	7.7241E-05	-0.22327	-0.00013469	-0.095232	-5.7452E-05	603.2848564938014	28.598	0.56106	28.599	28.41	28.971	0.0004673					30	19	2	0	0	0	0.38233	1	5063	5063		6.7232	0	1	213860	+		34310	21595	20102	20103	41685	41685					-0.03878560902353456
PSWSVIRPKF	10	Unmodified	_PSWSVIRPKF_					0	0	0			REV__ENST00000494472.1_1_2:46378245-46386996:+|nuORF	REV__ENST00000494472.1_1_2:46378245-46386996:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.2434387207031	3	406.232752	1215.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.277	1	54.261	53.761	54.761	-0.015923								0	0	0	0.36513	1	12872	12872		8.4443	0.83535	1		+		34311	21651	20103	20104	41686	41686					0.07721686530976513
PSYDQKKCPFR	11	Unmodified	_PSYDQKKCPFR_					0	0	0			REV__nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1	REV__nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2748718261719	3	456.895812	1367.66561	0.02724	1.2446E-05	2.9189	0.0013336	2.9461	0.0013461	456.8970885833316	27.094	0.42413	27.072	26.867	27.291	-0.021412					18	14	2	0	0	0	0.33287	1	4566	4566		2.8433	0.93691	1	73688	+		34312	16754	20104	20105	41687	41687					-0.0035208390563639114
PSYGQWNRGW	10	Unmodified	_PSYGQWNRGW_					0	0	0		ENST00000357776.6_2_17:42977098-42978910:+|nuORF	ENST00000357776.6_2_17:42977098-42978910:+|nuORF	ENST00000357776.6_2_17:42977098-42978910:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.5433044433594	3	417.528228	1249.56285	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.359	1	35.359	34.859	35.859	0								0	0	0	0.3629	1	7072	7072		5.4027	0.99656	1				34313	9638	20105	20106	41688	41688					-0.0519440858206508
PSYLPYLSFPK	11	Unmodified	_PSYLPYLSFPK_					0	0	0			REV__HERVH-int_dup515|chr2:34793914-34794525:+|2.1477617939098304|0.3159007483226581|2.77|519.0|3|1|sense	REV__HERVH-int_dup515|chr2:34793914-34794525:+|2.1477617939098304|0.3159007483226581|2.77|519.0|3|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.9030456542969	3	437.904301	1310.69108	-0.26488	-0.00011599	-1.294	-0.00056666	-1.5589	-0.00068266	438.2381355831103	28.271	1.0923	28.272	27.879	28.971	0.00046921					95	38	3	0	0	0	0.33263	1	4871	4871		3.8459	3.8459	1	514780	+		34314	22744	20106	20107	41689	41689					0.04815713888433493
PSYMRCHYRC	10	Unmodified	_PSYMRCHYRC_					0	0	0			REV__nc|ENSG00000242265|Q86TG7|PEG10	REV__nc|ENSG00000242265|Q86TG7|PEG10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.7698669433594	3	439.187944	1314.542	-0.10592	-4.6518E-05	-1.4559	-0.00063942	-1.5618	-0.00068594	439.1873737248835	28.732	0.5484	28.732	28.496	29.045	0.00046921					39	19	3	0	0	0	0.31942	1	5114	5114		6.1918	1.4759	1	131360	+		34315	19182	20107	20108	41690	41690					-0.10268781549234518
PSYSLSNLTDI	11	Unmodified	_PSYSLSNLTDI_					0	0	0		ENST00000205061.9_2_16:74484931-74485462:-|nuORF	ENST00000205061.9_2_16:74484931-74485462:-|nuORF	ENST00000205061.9_2_16:74484931-74485462:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2203369140625	3	403.871438	1208.59248	-0.45279	-0.00018287	0.31744	0.00012821	-0.13535	-5.4664E-05	403.87136204338276	46.05	0.41655	46.11	45.819	46.236	0.059834					24	14	2	0	0	0	0.3259	1	10266	10266		2.6312	0	1	430220			34316	8801	20108	20109	41691	41691					-0.0034693414722823945
PTAARDIT	8	Unmodified	_PTAARDIT_					0	0	0		ENST00000581080.1_1_17:38497677-38497911:-|nuORF	ENST00000581080.1_1_17:38497677-38497911:-|nuORF	ENST00000581080.1_1_17:38497677-38497911:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.7374572753906	2	422.729792	843.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.791	1	47.839	47.339	48.339	0.047523								0	0	0	0.29147	1	10879	10879		30.225	7.0764	1				34317	12081	20109	20110	41692	41692					0.01704638829266969
PTAGPLAQK	9	Unmodified	_PTAGPLAQK_					0	0	0		nc|ENSG00000142512|Q96LC7-8|SIGLEC10;ENST00000357375.4_1_19:51914355-51919928:-|nuORF;nc|ENSG00000142512|Q96LC7-9|SIGLEC10;nc|ENSG00000142512|Q96LC7-6|SIGLEC10;nc|ENSG00000142512|Q96LC7-7|SIGLEC10;nc|ENSG00000142512|Q96LC7-2|SIGLEC10;nc|ENSG00000142512|Q96LC7-4|SIGLEC10;nc|ENSG00000142512|Q96LC7-3|SIGLEC10;ENSG00000142512|ENST00000339313|SIGLEC10	nc|ENSG00000142512|Q96LC7-8|SIGLEC10	nc|ENSG00000142512|Q96LC7-8|SIGLEC10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7557373046875	2	441.75581	881.497067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.604	1	20.551	20.051	21.051	-0.05291								0	0	0	0.14393	1	2587	2587		36.127	11.453	1				34318	4447	20110	20111	41693	41693					0.05157802243036258
PTAGPRRQ	8	Unmodified	_PTAGPRRQ_					0	0	0			REV__nc|ENSG00000165689|Q96C92-2|ENTR1	REV__nc|ENSG00000165689|Q96C92-2|ENTR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7557373046875	2	441.74885	881.483148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.514	1	20.514	20.014	21.014	0								0	0	0	0.33122	1	2561	2561		23.148	0	1		+		34319	17256	20111	20112	41694	41694					0.03766569534604969
PTAGPRRQ	8	Unmodified	_PTAGPRRQ_					0	0	0			REV__nc|ENSG00000165689|Q96C92-2|ENTR1	REV__nc|ENSG00000165689|Q96C92-2|ENTR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.75579833984375	2	441.74885	881.483148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.817	1	20.707	20.207	21.207	-0.11003								0	0	0	0.34492	1	2655	2655		16.942	1.0951	1		+		34320	17256	20111	20112	41695	41695					0.03766569534604969
PTAIFGPLV	9	Unmodified	_PTAIFGPLV_					0	0	0			REV__ENSG00000204228|ENST00000374662|HSD17B8	REV__ENSG00000204228|ENST00000374662|HSD17B8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7706604003906	2	457.770929	913.527304	0.3664	0.00016773	0.51209	0.00023442	0.87849	0.00040215	457.77069776290426	84.176	3.8803	84.159	83.187	87.067	-0.016823					197	157	2	0	0	0	0.21303	1	22074	22074		21.747	2.3076	1	524570	+		34321	18928	20112	20113	41696	41696					0.06708160908237915
PTAIFRLAP	9	Unmodified	_PTAIFRLAP_					0	0	0			REV__nc|ENSG00000100938|Q9P2T1-2|GMPR2	REV__nc|ENSG00000100938|Q9P2T1-2|GMPR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2875061035156	2	493.295102	984.575651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.948	1	22.948	22.448	23.448	0								0	0	0	0.25499	1	3299	3299		4.756	0.42677	1		+		34322	22914	20113	20114	41697	41697					0.08274654548131366
PTAISNFSWIK	11	Unmodified	_PTAISNFSWIK_					0	0	0			REV__chr4:69051602-69088767|449|31.4|0.33|6.56|+|1|UGT2B7,None|1	REV__chr4:69051602-69088767|449|31.4|0.33|6.56|+|1|UGT2B7,None|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.21075439453125	3	421.895917	1262.66592	0.38999	0.00016454	-1.5234	-0.00064271	-1.1334	-0.00047818	421.8955940074645	48.278	0.080582	48.326	48.285	48.366	0.047523					4	2	2	0	0	0	0.3239	1	11032	11032		6.6235	1.2207	1	52876	+		34323	13197	20114	20115	41698	41698					0.045096590858975105
PTALERELSK	10	Unmodified	_PTALERELSK_					0	0	0			REV__ENST00000573309.5_1_16:10971115-11002148:+|nuORF	REV__ENST00000573309.5_1_16:10971115-11002148:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7757568359375	2	572.322045	1142.62954	0.11179	6.398E-05	0.46767	0.00026766	0.57946	0.00033164	572.8241071024662	25.504	0.38624	25.504	25.296	25.683	0					20	12	2	0	0	0	0.31926	1	4083	4083		5.7319	0	1	77430	+		34324	22413	20115	20116	41699	41699					0.06392782189186619
PTALRRGPL	9	Unmodified	_PTALRRGPL_					0	0	0		ENST00000483574.6_1_1:153748462-153750656:+|nuORF;ENST00000484014.5_1_1:153748462-153751189:+|nuORF;nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3;nc|ENSG00000143554|Q5K4L6-3|SLC27A3;ENST00000468403.1_1_1:153747811-153748660:+|nuORF	ENST00000483574.6_1_1:153748462-153750656:+|nuORF	ENST00000483574.6_1_1:153748462-153750656:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.8035583496094	2	490.803626	979.592698	0.13592	6.6708E-05	-0.37827	-0.00018566	-0.24235	-0.00011895	490.803320783634	22.713	0.86357	22.626	22.379	23.242	-0.087608					63	30	3	0	0	0	0.29638	1	3241	3241		9.3831	1.473	1	308010			34325	4530	20116	20117	41700	41700					0.10208575153933452
PTANKIIKRPK	11	Unmodified	_PTANKIIKRPK_					0	0	0			REV__ENST00000464256.1_1_21:34131875-34131941:-|nuORF	REV__ENST00000464256.1_1_21:34131875-34131941:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.59246826171875	3	422.60659	1264.79794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.294	1	48.294	47.794	48.794	0								0	0	0	0.366	1	11039	11039		4.7159	2.2811	1		+		34326	21262	20117	20118	41701	41701					0.17613308893487556
PTASIVATTL	10	Unmodified	_PTASIVATTL_					0	0	0			REV__nc|ENSG00000170325|Q9NQV6-2|PRDM10	REV__nc|ENSG00000170325|Q9NQV6-2|PRDM10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.27496337890625	2	487.281857	972.549162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.499	1	13.499	12.999	13.999	0								0	0	0	0.35216	1	443	443		13.906	3.8321	1		+		34327	17572	20118	20119	41702	41702					0.061789208661252815
PTASIWLW	8	Unmodified	_PTASIWLW_					0	0	0			REV__ENST00000379339.5_2_1:1019401-1019662:-|nuORF	REV__ENST00000379339.5_2_1:1019401-1019662:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.2603454589844	2	487.260728	972.506903	-0.063385	-3.0885E-05	-0.28686	-0.00013978	-0.35025	-0.00017066	487.2605261915968	13.444	0.31466	13.444	13.282	13.597	0					18	10	2	0	0	0	0.4397	1	432	432		9.3474	1.4373	1	209450	+		34328	20533	20119	20120	41703	41703					0.019549902484186532
PTASIWLW	8	Unmodified	_PTASIWLW_					0	0	0			REV__ENST00000379339.5_2_1:1019401-1019662:-|nuORF	REV__ENST00000379339.5_2_1:1019401-1019662:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.27496337890625	2	487.260728	972.506903	-0.063385	-3.0885E-05	-0.28686	-0.00013978	-0.35025	-0.00017066	487.2605261915968	13.444	0.31466	13.444	13.282	13.597	0					18	10	2	0	0	0	0.3366	1	443	443		18.135	10.225	1	209450	+		34329	20533	20119	20120	41704	41704					0.019549902484186532
PTASIWLW	8	Unmodified	_PTASIWLW_					0	0	0			REV__ENST00000379339.5_2_1:1019401-1019662:-|nuORF	REV__ENST00000379339.5_2_1:1019401-1019662:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2749328613281	2	487.260728	972.506903	-0.085876	-4.1844E-05	-0.59569	-0.00029026	-0.68156	-0.0003321	487.26039955395714	13.495	0.38776	13.396	13.276	13.663	-0.099291					22	13	2	0	0	0	0.4397	1	463	463		9.3474	1.4373	1	214240	+		34330	20533	20119	20120	41705	41705					0.019549902484186532
PTASIWLW	8	Unmodified	_PTASIWLW_					0	0	0			REV__ENST00000379339.5_2_1:1019401-1019662:-|nuORF	REV__ENST00000379339.5_2_1:1019401-1019662:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.2601623535156	2	487.260728	972.506903	-0.080432	-3.9191E-05	-0.38062	-0.00018546	-0.46105	-0.00022465	487.2604896062626	13.507	0.38379	13.439	13.302	13.686	-0.067496					26	13	3	0	0	0	0.45169	1	442	442		5.2307	0.90143	1	194350	+		34331	20533	20119	20120	41706	41706					0.019549902484186532
PTDVFLLL	8	Unmodified	_PTDVFLLL_					0	0	0		ENST00000556704.1_1_15:91486092-91490047:+|nuORF	ENST00000556704.1_1_15:91486092-91490047:+|nuORF	ENST00000556704.1_1_15:91486092-91490047:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2549133300781	2	459.270761	916.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.642	1	62.739	62.239	63.239	0.096985								0	0	0	0.29147	1	15459	15459		30.225	3.8835	1				34332	11864	20120	20121	41707	41707					0.06536741188392625
PTEFIGGVTS	10	Unmodified	_PTEFIGGVTS_					0	0	0		nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;EPB41L3|p.K943Nfs*9|1|0.39|ENSG00000082397|chr18:5397070-5397070|T/-|frameshift_variant	nc|ENSG00000082397|Q9Y2J2-4|EPB41L3	nc|ENSG00000082397|Q9Y2J2-4|EPB41L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7791748046875	2	504.25584	1006.49713	0.098457	4.9647E-05	-2.6341	-0.0013283	-2.5357	-0.0012786	504.25445062414053	15.212	0.27582	15.103	14.955	15.23	-0.10981					17	9	2	0	0	0	0.31889	1	958	958		6.2058	1.4498	1	67149			34333	1200	20121	20122	41708	41708					-0.005862425475811506
PTEMSSRVKSY	11	Unmodified	_PTEMSSRVKSY_					0	0	0		ENSG00000226763|ENST00000417606|SRRM5;SRRM5|p.S306Lfs*3|1|0.06|ENSG00000226763|chr19:43613036-43613037|-/CTTCCTTG|frameshift_variant	ENSG00000226763|ENST00000417606|SRRM5	ENSG00000226763|ENST00000417606|SRRM5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.5487365722656	3	428.879939	1283.61799	-0.17131	-7.3472E-05	-4.163	-0.0017854	-4.3343	-0.0018589	428.8783299173224	16.162	0.23038	16.099	15.975	16.205	-0.062534					11	7	2	0	0	0	0.32396	1	1221	1221		15.538	3.9071	1	25745			34334	8452	20122	20123	41709	41709					-0.012477828964392756
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.251953125	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.66	1	112.66	112.16	113.16	0								0	0	0	0.37078	1	29276	29276		5.2307	0.90143	1				34335	23389	20123	20124	41710	41710					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.25390625	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.45	1	113.45	112.95	113.95	0								0	0	0	0.37078	1	29466	29466		5.2307	0.47466	1				34336	23389	20123	20124	41711	41711					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2533874511719	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.79	1	114.79	114.29	115.29	0								0	0	0	0.37078	1	29771	29771		5.2307	0.47466	1				34337	23389	20123	20124	41712	41712					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.25439453125	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.79	1	116.79	116.29	117.29	0								0	0	0	0.37078	1	30223	30223		5.2307	0.47466	1				34338	23389	20123	20124	41713	41713					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.25469970703125	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.75	1	117.75	117.25	118.25	0								0	0	0	0.37078	1	30440	30440		5.2307	0.47466	1				34339	23389	20123	20124	41714	41714					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2541198730469	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.9	1	117.9	117.4	118.4	0								0	0	0	0.37078	1	30476	30476		5.2307	0.47466	1				34340	23389	20123	20124	41715	41715					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2532043457031	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.56	1	118.56	118.06	119.06	0								0	0	0	0.37078	1	30622	30622		5.2307	0.47466	1				34341	23389	20123	20124	41716	41716					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2544860839844	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.72	1	113.7	113.2	114.2	-0.017303								0	0	0	0.37078	1	29551	29551		5.2307	0.47466	1				34342	23389	20123	20124	41717	41717					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2540588378906	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.93	1	113.91	113.41	114.41	-0.019096								0	0	0	0.37078	1	29600	29600		5.2307	0.47466	1				34343	23389	20123	20124	41718	41718					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.25372314453125	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.23	1	115.21	114.71	115.71	-0.020988								0	0	0	0.37078	1	29887	29887		5.2307	0.47466	1				34344	23389	20123	20124	41719	41719					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2535705566406	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.31	1	116.29	115.79	116.79	-0.022781								0	0	0	0.37078	1	30132	30132		5.2307	0.47466	1				34345	23389	20123	20124	41720	41720					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.25439453125	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.17	1	117.15	116.65	117.65	-0.024147								0	0	0	0.37078	1	30336	30336		5.2307	0.47466	1				34346	23389	20123	20124	41721	41721					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.25396728515625	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.23	1	118.21	117.71	118.71	-0.024147								0	0	0	0.37078	1	30571	30571		5.2307	0.47466	1				34347	23389	20123	20124	41722	41722					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2552795410156	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.81	1	113.83	113.33	114.33	0.014824								0	0	0	0.37078	1	29607	29607		5.2307	0.47466	1				34348	23389	20123	20124	41723	41723					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2545471191406	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.75	1	114.77	114.27	115.27	0.016708								0	0	0	0.37078	1	29836	29836		5.2307	0.90143	1				34349	23389	20123	20124	41724	41724					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2537841796875	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.97	1	114.99	114.49	115.49	0.018738								0	0	0	0.37078	1	29886	29886		5.2307	0.90143	1				34350	23389	20123	20124	41725	41725					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2542419433594	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.29	1	115.31	114.81	115.81	0.018738								0	0	0	0.37078	1	29953	29953		5.2307	0.47466	1				34351	23389	20123	20124	41726	41726					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2545471191406	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.51	1	115.53	115.03	116.03	0.018738								0	0	0	0.37078	1	29997	29997		5.2307	0.47466	1				34352	23389	20123	20124	41727	41727					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2534484863281	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.91	1	116.94	116.44	117.44	0.020988								0	0	0	0.37078	1	30323	30323		5.2307	0.90143	1				34353	23389	20123	20124	41728	41728					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2537841796875	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.18	1	117.2	116.7	117.7	0.023476								0	0	0	0.35251	1	30384	30384		13.508	1.8676	1				34354	23389	20123	20124	41729	41729					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2537536621094	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.61	1	117.63	117.13	118.13	0.023476								0	0	0	0.37724	1	30479	30479		2.3027	0	1				34355	23389	20123	20124	41730	41730					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2537841796875	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.28	1	118.31	117.81	118.81	0.026253								0	0	0	0.37078	1	30631	30631		5.2307	0.47466	1				34356	23389	20123	20124	41731	41731					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2528381347656	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.39	1	119.41	118.91	119.91	0.027756								0	0	0	0.37724	1	30880	30880		2.3027	0	1				34357	23389	20123	20124	41732	41732					-0.013758318457234964
PTFFFSYL	8	Unmodified	_PTFFFSYL_					0	0	0		TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	TEKT5|p.P479Rfs*?|1|0.08|ENSG00000153060|chr16:10627605-10627605|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2529296875	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.75	1	119.78	119.28	120.28	0.027756								0	0	0	0.37078	1	30962	30962		5.2307	0.47466	1				34358	23389	20123	20124	41733	41733					-0.013758318457234964
PTFHGTFL	8	Unmodified	_PTFHGTFL_					0	0	0			REV__ENST00000391929.7_1_1:207076441-207076570:+|nuORF	REV__ENST00000391929.7_1_1:207076441-207076570:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.6025085449219	2	460.237253	918.459953	-0.17547	-8.0758E-05	1.1929	0.00054903	1.0175	0.00046827	460.23718905230413	18.707	0.64202	18.649	18.372	19.014	-0.058174					37	22	3	0	0	0	0.34337	1	1976	1976		5.2307	0	1	52587	+		34359	20586	20124	20125	41734	41734					-0.002538693027190675
PTFQVASIEMF	11	Unmodified	_PTFQVASIEMF_					0	0	0		ENST00000443101.6_1_7:112077294-112095874:+|nuORF	ENST00000443101.6_1_7:112077294-112095874:+|nuORF	ENST00000443101.6_1_7:112077294-112095874:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.2324523925781	3	423.877647	1268.61111	0.30708	0.00013016	-0.52353	-0.00022191	-0.21645	-9.1749E-05	423.87749886296	48.249	0.44762	48.297	48.101	48.549	0.047523					32	16	3	0	0	0	0.32951	1	11102	11102		4.4062	2.4998	1	192400			34360	10565	20125	20126	41735	41735					-0.012450957770397508
PTFQVASIEMF	11	Unmodified	_PTFQVASIEMF_					0	0	0		ENST00000443101.6_1_7:112077294-112095874:+|nuORF	ENST00000443101.6_1_7:112077294-112095874:+|nuORF	ENST00000443101.6_1_7:112077294-112095874:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.23236083984375	3	423.877647	1268.61111	0.22281	9.4443E-05	0.050697	2.1489E-05	0.2735	0.00011593	424.212050222989	48.214	0.44376	48.258	48.065	48.509	0.04332					26	16	2	0	0	0	0.32824	1	11049	11049		6.2344	0.5025	1	269050			34361	10565	20125	20126	41736	41736					-0.012450957770397508
PTFQVASIEMF	11	Unmodified	_PTFQVASIEMF_					0	0	0		ENST00000443101.6_1_7:112077294-112095874:+|nuORF	ENST00000443101.6_1_7:112077294-112095874:+|nuORF	ENST00000443101.6_1_7:112077294-112095874:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	423.877647	1268.61111	0.1677	7.1083E-05	-0.18812	-7.9739E-05	-0.020421	-8.6559E-06	424.2117282344452	48.285	0.37333	48.285	48.106	48.48	0	0.0050723	7.0422E-05	NaN	6.2344	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284440			34362	10565	20125	20126							-0.012450957770397508
PTFYTHPR	8	Unmodified	_PTFYTHPR_					0	0	0			REV__ENSG00000112877|ENST00000264935|CEP72	REV__ENSG00000112877|ENST00000264935|CEP72	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2984313964844	2	509.758884	1017.50321	0.33223	0.00016936	0.15396	7.8481E-05	0.48619	0.00024784	510.2597475996084	17.019	0.45685	16.958	16.784	17.241	-0.060429					24	16	2	0	0	0	0.34353	1	1484	1484		4.756	0	1	72058	+		34363	14790	20126	20127	41737	41737					-0.004836795254391291
PTHLSPQAAP	10	Unmodified	_PTHLSPQAAP_					0	0	0		ENST00000609309.2_3_7:99955774-99964972:+|nuORF	ENST00000609309.2_3_7:99955774-99964972:+|nuORF	ENST00000609309.2_3_7:99955774-99964972:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2778015136719	2	509.769448	1017.52434	-0.0098472	-5.0198E-06	-2.9006	-0.0014787	-2.9105	-0.0014837	509.76812463509987	13.53	0.53491	13.53	13.427	13.962	0					25	18	2	0	0	0	0.31039	1	523	523		18.146	4.2403	1	94892			34364	12323	20127	20128	41738	41738					0.016282857834198694
PTHRRRGSF	9	Unmodified	_PTHRRRGSF_					0	0	0		nc|ENSG00000091542|Q6P6C2-3|ALKBH5;ENSG00000091542|ENST00000399138|ALKBH5;nc|ENSG00000091542|Q6P6C2-1|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	nc|ENSG00000091542|Q6P6C2-3|ALKBH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3052368164062	2	557.304855	1112.59516	0.17061	9.5084E-05	0.70546	0.00039316	0.87608	0.00048824	557.3051963480344	43.125	1.081	43.209	42.71	43.791	0.083992					98	39	3	0	0	0	0.14076	1	9450	9450		32.305	32.305	1	4569800			34365	1406	20128	20129	41739	41739					0.04336423611607643
PTHTQFDFV	9	Unmodified	_PTHTQFDFV_					0	0	0		nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1;TENM1|p.I1404Ffs*16|1|0.26|ENSG00000009694|chrX:124422513-124422513|G/-|frameshift_variant	nc|ENSG00000009694|Q9UKZ4-2|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.7461547851562	2	546.261456	1090.50836	0.62211	0.00033984	-1.9234	-0.0010507	-1.3013	-0.00071083	546.2604057621021	71.787	0.26965	71.844	71.68	71.949	0.056572					13	9	2	0	0	0	0.2451	1	18247	18247		15.847	5.0233	1	141230			34366	408	20129	20130	41740	41740					-0.03327420453479135
PTIEFEEAAY	10	Unmodified	_PTIEFEEAAY_					0	0	0		ENSG00000138759|ENST00000512123|FRAS1;nc|ENSG00000138759|Q86XX4|FRAS1	ENSG00000138759|ENST00000512123|FRAS1	ENSG00000138759|ENST00000512123|FRAS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.2720336914062	2	585.271687	1168.52882	0.55305	0.00032368	-0.59685	-0.00034932	-0.043801	-2.5635E-05	585.271622218396	32.256	1.0556	32.311	32.007	33.063	0.055309					96	37	4	0	0	0	0.1715	1	6155	6155		36.127	0	1	851760			34367	4188	20130	20131	41741	41741					-0.04870294584338808
PTIPMEEKF	9	Unmodified	_PTIPMEEKF_					0	0	0			REV__ENSG00000243335|ENST00000639828|KCTD7	REV__ENSG00000243335|ENST00000639828|KCTD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2772827148438	2	546.275718	1090.53688	0.45785	0.00025011	1.0326	0.0005641	1.4905	0.00081422	546.2765541472869	66.827	1.4522	66.827	66.545	67.997	0					120	50	5	0	0	0	0.18803	1	16826	16826		25.399	3.8623	1	1551800	+		34368	19192	20131	20132	41742	41742					-0.004764388685543963
PTKALPVAMV	10	Unmodified	_PTKALPVAMV_					0	0	0		ENST00000540992.1_1_12:16666501-16667302:+|nuORF	ENST00000540992.1_1_12:16666501-16667302:+|nuORF	ENST00000540992.1_1_12:16666501-16667302:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.8052368164062	2	513.804445	1025.59434	0.49467	0.00025416	1.3171	0.00067672	1.8118	0.00093089	513.8048464664746	87.038	0.80743	87.038	86.703	87.511	0					67	33	3	0	0	0	0.40262	1	22921	22921		2.9952	1.151	1	737580			34369	11729	20132	20133	41743	41743					0.08256448127690419
PTKANKATL	9	Unmodified	_PTKANKATL_					0	0	0			REV__nc|ENSG00000155313|Q9UHP3|USP25	REV__nc|ENSG00000155313|Q9UHP3|USP25	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2835998535156	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.687	1	92.776	92.276	93.276	0.089195								0	0	0	0.2489	1	24658	24658		6.7232	0.96273	1		+		34370	16695	20133	20134	41744	41744					0.0762576030585933
PTKCLKCT	8	Unmodified	_PTKCLKCT_					0	0	0			REV__ENST00000260197.11_1_11:121501710-121501857:+|nuORF	REV__ENST00000260197.11_1_11:121501710-121501857:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.76556396484375	2	447.232799	892.451044	0.26085	0.00011666	3.2131	0.001437	3.474	0.0015537	447.23396705066887	80.603	0.51985	80.576	80.294	80.814	-0.026817					23	18	2	0	0	0	0.34131	1	20896	20896		7.9102	0	1	199070	+		34371	19576	20134	20135	41745	41745					0.0005169774493651857
PTKEGLLL	8	Unmodified	_PTKEGLLL_					0	0	0			REV__ENST00000519806.1_1_8:40532148-40554851:-|nuORF	REV__ENST00000519806.1_1_8:40532148-40554851:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.7682189941406	2	435.768386	869.522219	-0.014506	-6.321E-06	-0.50514	-0.00022013	-0.51965	-0.00022645	435.767999658969	66.823	0.64706	66.907	66.572	67.219	0.083832					67	22	4	0	0	0	0.25352	1	16745	16745		36.127	0.082828	1	1278100	+		34372	17204	20135	20136	41746	41746					0.08223857045629757
PTKEKLSK	8	Unmodified	_PTKEKLSK_					0	0	0			REV__ENSG00000023516|ENST00000025301|AKAP11	REV__ENSG00000023516|ENST00000025301|AKAP11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7478942871094	2	465.784567	929.554582	0.01102	5.1329E-06	-1.0304	-0.00047994	-1.0194	-0.0004748	465.7841325458268	21.631	0.39231	21.631	21.338	21.731	0					17	13	2	0	0	0	0.34353	1	2837	2837		4.756	0.81161	1	25595	+		34373	13095	20136	20137	41747	41747					0.08698644448611503
PTKGAREKA	9	Unmodified	_PTKGAREKA_					0	0	0		nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.27728271484375	2	479.277441	956.540328	0.39285	0.00018828	-0.28276	-0.00013552	0.11009	5.2763E-05	479.2772159021679	75.409	1.3658	75.378	75.005	76.37	-0.031487					98	50	2	0	0	0	0.3208	1	19489	19489		5.7319	0.43497	1	2627700			34374	2315	20137	20138	41748	41748					0.06031992020314192
PTKLPSQTR	9	Unmodified	_PTKLPSQTR_					0	0	0			REV__ENSG00000185955|ENST00000332375|SPACDR	REV__ENSG00000185955|ENST00000332375|SPACDR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.29833984375	2	514.298373	1026.58219	0.50978	0.00026218	-0.24463	-0.00012581	0.26515	0.00013636	514.2982286315752	86.267	1.0642	86.267	85.819	86.883	0					97	41	5	0	0	0	0.3208	1	22785	22785		5.7319	5.7319	1	1245300	+		34375	18423	20138	20139	41749	41749					0.06996547708831713
PTKLPSQTR	9	Unmodified	_PTKLPSQTR_					0	0	0			REV__ENSG00000185955|ENST00000332375|SPACDR	REV__ENSG00000185955|ENST00000332375|SPACDR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2985229492188	2	514.298373	1026.58219	0.37423	0.00019247	0.091438	4.7027E-05	0.46567	0.00023949	514.2982655319071	86.204	1.0716	86.195	85.791	86.863	-0.0090103					100	41	3	0	0	0	0.29638	1	22654	22654		9.3831	9.3831	1	1469900	+		34376	18423	20138	20139	41750	41750					0.06996547708831713
PTKLTIYKLY	10	Unmodified	_PTKLTIYKLY_					0	0	0			REV__nc|ENSG00000012779|P09917-5|ALOX5	REV__nc|ENSG00000012779|P09917-5|ALOX5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8701171875	2	620.371007	1238.72746	0.08474	5.257E-05	1.292	0.00080152	1.3767	0.00085409	620.3720626171662	92.694	0.57055	92.783	92.364	92.934	0.089195					53	40	2	0	0	0	0.31926	1	24531	24531		5.7319	0.43497	1	151010	+		34377	13441	20139	20140	41751	41751					0.1176459078519656
PTKMIFEGPNK	11	Unmodified	_PTKMIFEGPNK_					0	0	0		PCF11|p.M1348Rfs*8|1|0.06|ENSG00000165494|chr11:83181066-83181067|-/GATGGAGCCTGTCTTCTTAT|frameshift_variant;nc|ENSG00000165494|O94913|PCF11;ENSG00000165494|ENST00000690938|PCF11	PCF11|p.M1348Rfs*8|1|0.06|ENSG00000165494|chr11:83181066-83181067|-/GATGGAGCCTGTCTTCTTAT|frameshift_variant	PCF11|p.M1348Rfs*8|1|0.06|ENSG00000165494|chr11:83181066-83181067|-/GATGGAGCCTGTCTTCTTAT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	631.3516845703125	2	631.334098	1260.65364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.62	1	106.62	106.12	107.12	0								0	0	0	0.33831	1	28166	28166		10.8	2.644	1				34378	5967	20140	20141	41752	41752					0.03374299351185073
PTKNDKLV	8	Unmodified	_PTKNDKLV_					0	0	0		ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7715759277344	2	457.768917	913.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.378	1	84.455	83.955	84.955	0.077095								0	0	0	0.31323	1	22110	22110		26.884	2.2098	1				34379	4036	20141	20142	41753	41753					0.06306071414519465
PTKNDKLV	8	Unmodified	_PTKNDKLV_					0	0	0		ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.77105712890625	2	457.768917	913.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.423	1	84.5	84	85	0.077095								0	0	0	0.33717	1	22124	22124		20.454	1.0146	1				34380	4036	20141	20142	41754	41754					0.06306071414519465
PTKNDKLV	8	Unmodified	_PTKNDKLV_					0	0	0		ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7716064453125	2	457.768917	913.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.705	1	84.786	84.286	85.286	0.080887								0	0	0	0.31323	1	22211	22211		26.884	0.54238	1				34381	4036	20141	20142	41755	41755					0.06306071414519465
PTKNDKLV	8	Unmodified	_PTKNDKLV_					0	0	0		ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.771484375	2	457.768917	913.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.727	1	84.808	84.308	85.308	0.080887								0	0	0	0.33717	1	22218	22218		20.454	1.0146	1				34382	4036	20141	20142	41756	41756					0.06306071414519465
PTKNDKLV	8	Unmodified	_PTKNDKLV_					0	0	0		ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7708740234375	2	457.768917	913.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.36	1	85.441	84.941	85.941	0.080887								0	0	0	0.31323	1	22411	22411		26.884	0.54238	1				34383	4036	20141	20142	41757	41757					0.06306071414519465
PTKNDKLV	8	Unmodified	_PTKNDKLV_					0	0	0		ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.770751953125	2	457.768917	913.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.382	1	85.463	84.963	85.963	0.080887								0	0	0	0.3293	1	22418	22418		24.021	8.1734	1				34384	4036	20141	20142	41758	41758					0.06306071414519465
PTKNDKLV	8	Unmodified	_PTKNDKLV_					0	0	0		ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.770751953125	2	457.768917	913.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.519	1	85.6	85.1	86.1	0.080887								0	0	0	0.33717	1	22460	22460		20.454	4.6064	1				34385	4036	20141	20142	41759	41759					0.06306071414519465
PTKNDKLV	8	Unmodified	_PTKNDKLV_					0	0	0		ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7711181640625	2	457.768917	913.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.876	1	84.863	84.363	85.363	-0.01284								0	0	0	0.28879	1	22256	22256		30.637	10.183	1				34386	4036	20141	20142	41760	41760					0.06306071414519465
PTKNDKLV	8	Unmodified	_PTKNDKLV_					0	0	0		ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7712707519531	2	457.768917	913.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.22	1	85.208	84.708	85.708	-0.01284								0	0	0	0.31323	1	22362	22362		26.884	5.137	1				34387	4036	20141	20142	41761	41761					0.06306071414519465
PTKNDKLV	8	Unmodified	_PTKNDKLV_					0	0	0		ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7708435058594	2	457.768917	913.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.393	1	85.38	84.88	85.88	-0.01284								0	0	0	0.33717	1	22415	22415		20.454	4.6064	1				34388	4036	20141	20142	41762	41762					0.06306071414519465
PTKNDKLV	8	Unmodified	_PTKNDKLV_					0	0	0		ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7708740234375	2	457.768917	913.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.446	1	85.433	84.933	85.933	-0.01284								0	0	0	0.31323	1	22431	22431		26.884	0.54238	1				34389	4036	20141	20142	41763	41763					0.06306071414519465
PTKNDKLV	8	Unmodified	_PTKNDKLV_					0	0	0		ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7708740234375	2	457.768917	913.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.606	1	85.597	85.097	86.097	-0.0090027								0	0	0	0.3293	1	22480	22480		24.021	8.1734	1				34390	4036	20141	20142	41764	41764					0.06306071414519465
PTKPIKHTI	9	Unmodified	_PTKPIKHTI_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8194580078125	2	517.821484	1033.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.999	1	82.999	82.499	83.499	0								0	0	0	0.2505	1	21694	21694		6.2058	1.4498	1				34391	3377	20142	20143	41765	41765					0.1129461261095912
PTKPPYLV	8	Unmodified	_PTKPPYLV_					0	0	0			REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.77117919921875	2	457.770929	913.527304	0.31615	0.00014472	0.88908	0.00040699	1.2052	0.00055172	457.77098268169004	84.736	2.9578	84.736	83.427	86.385	0					175	113	2	0	0	0	0.39068	2	22260	22260;22514		20.454	1.0146	1	567380	+		34392	14013	20143	20144	41766;41767	41766					0.06708160908215177
PTKQPRTPRP	10	Unmodified	_PTKQPRTPRP_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3612670898438	2	589.343646	1176.67274	-0.021919	-1.2918E-05	-0.43157	-0.00025434	-0.45349	-0.00026726	589.3433726276272	101.72	0.81258	101.72	101.38	102.19	0					166	108	2	0	0	0	0.31876	1	27065	27065		7.1017	1.3699	1	123810			34393	3014	20144	20145	41768	41768					0.09147016757128767
PTKQPRTPRP	10	Unmodified	_PTKQPRTPRP_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3428344726562	2	589.343646	1176.67274	0.12662	7.4623E-05	-0.72517	-0.00042738	-0.59855	-0.00035275	589.3430952410398	100.57	0.44999	100.61	100.43	100.88	0.039001					91	62	2	0	0	0	0.39227	1	26896	26896		4.897	1.6157	1	158770			34394	3014	20144	20145	41769	41769					0.09147016757128767
PTKQPRTPRP	10	Unmodified	_PTKQPRTPRP_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3445434570312	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.72	1	112.71	112.21	113.21	-0.015625								0	0	0	0.37925	1	29317	29317		2.4985	0.84587	1				34395	3014	20144	20145	41770	41770					0.09147016757128767
PTKQPRTPRP	10	Unmodified	_PTKQPRTPRP_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3611450195312	2	589.343646	1176.67274	0.12683	7.4745E-05	-0.40267	-0.00023731	-0.27585	-0.00016257	589.3433524781104	101.01	0.56239	101.03	100.82	101.38	0.027214					118	77	2	0	0	0	0.31876	1	26994	26994		7.1017	1.3699	1	165280			34396	3014	20144	20145	41771	41771					0.09147016757128767
PTKQPRTPRP	10	Unmodified	_PTKQPRTPRP_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3612670898438	2	589.343646	1176.67274	0.31869	0.00018782	-0.5287	-0.00031159	-0.21001	-0.00012377	589.3432447853833	101.57	0.49689	101.56	101.2	101.7	-0.0054703					98	64	2	0	0	0	0.31794	1	27070	27070		8.1555	8.1555	1	102160			34397	3014	20144	20145	41772	41772					0.09147016757128767
PTKQPRTPRP	10	Unmodified	_PTKQPRTPRP_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	589.343646	1176.67274	0.31876	0.00018786	-0.97468	-0.00057442	-0.65592	-0.00038656	589.3430706268599	100.64	0.69521	100.63	100.3	101	-0.006897	0.0095673	-0.00013696	NaN	4.897	142	97	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172010			34398	3014	20144	20145							0.09147016757128767
PTKQPRTPRP	10	Unmodified	_PTKQPRTPRP_					0	0	0		ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	ENSG00000121871|ENST00000475390|SLITRK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	589.343646	1176.67274	0.31853	0.00018773	-0.86251	-0.00050831	-0.54397	-0.00032059	589.3430509391966	101.82	0.27002	101.81	101.7	101.97	-0.0054703	0.045775	-0.00043079	NaN	7.1017	51	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125290			34399	3014	20144	20145							0.09147016757128767
PTKRPLRE	8	Unmodified	_PTKRPLRE_					0	0	0			REV__ENST00000396081.5_1_7:35734394-35734541:-|nuORF	REV__ENST00000396081.5_1_7:35734394-35734541:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.30987548828125	2	498.801083	995.587613	0.47797	0.00023841	-0.294	-0.00014665	0.18397	9.1766E-05	498.80108129902646	93.396	0.21829	93.395	93.257	93.476	-0.00051117					31	20	2	0	0	0	0.34313	1	24879	24879		6.7232	1.9672	1	175770	+		34400	19899	20145	20146	41773	41773					0.08964271291313253
PTKRTRTY	8	Unmodified	_PTKRTRTY_					0	0	0		ENSG00000172346|ENST00000306149|CSDC2	ENSG00000172346|ENST00000306149|CSDC2	ENSG00000172346|ENST00000306149|CSDC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.3274841308594	2	511.790715	1021.56688	0.38766	0.0001984	-2.8671	-0.0014674	-2.4794	-0.001269	511.7892187971374	86.599	0.24054	86.59	86.529	86.77	-0.0090027					11	8	2	0	0	0	0.34272	1	22824	22824		7.9102	1.7044	1	82230			34401	6625	20146	20147	41774	41774					0.05695680911662748
PTKRVRSS	8	Unmodified	_PTKRVRSS_					0	0	0		nc|ENSG00000164188|Q86VV4-2|RANBP3L;ENSG00000164188|ENST00000296604|RANBP3L;nc|ENSG00000164188|Q86VV4-3|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7775573730469	2	465.777608	929.540663	0.061664	2.8722E-05	0.16078	7.4889E-05	0.22245	0.00010361	465.77756619140615	71.49	1.8231	71.49	70.873	72.696	0					199	65	4	0	0	0	0.4354	2	18406	18406;18453		10.824	4.1008	1	2750300			34402	5809	20147	20148	41775;41776	41775					0.07307411740180214
PTKRVRSS	8	Unmodified	_PTKRVRSS_					0	0	0		nc|ENSG00000164188|Q86VV4-2|RANBP3L;ENSG00000164188|ENST00000296604|RANBP3L;nc|ENSG00000164188|Q86VV4-3|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.77764892578125	2	465.777608	929.540663	0.069502	3.2372E-05	-1.2182	-0.00056741	-1.1487	-0.00053504	465.7775319258724	71.513	3.7412	71.57	70.875	74.617	0.056572					306	134	4	0	0	0	0.4354	2	18380	18380;18429		10.824	4.1008	1	2579700			34403	5809	20147	20148	41777;41778	41777					0.07307411740180214
PTKRVRSS	8	Unmodified	_PTKRVRSS_					0	0	0		nc|ENSG00000164188|Q86VV4-2|RANBP3L;ENSG00000164188|ENST00000296604|RANBP3L;nc|ENSG00000164188|Q86VV4-3|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	nc|ENSG00000164188|Q86VV4-2|RANBP3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.777587890625	2	465.777608	929.540663	0.29394	0.00013691	-0.13788	-6.4221E-05	0.15606	7.2688E-05	465.7774408601235	71.615	3.3981	71.588	70.637	74.035	-0.027275					249	122	4	0	0	0	0.4354	1	18386	18386		10.824	4.1008	1	3172700			34404	5809	20147	20148	41779	41779					0.07307411740180214
PTKVSRHA	8	Unmodified	_PTKVSRHA_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;SRRM2|p.R1377Pfs*50|1|0.03|ENSG00000167978|chr16:2764657-2764660|AGAT/-|frameshift_variant	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.2601013183594	2	448.259051	894.503549	0.28557	0.00012801	-0.29139	-0.00013062	-0.0058187	-2.6083E-06	448.25888225530827	79.849	1.0832	79.82	79.418	80.502	-0.028923					102	38	4	0	0	0	0.44389	1	20647	20647		7.9102	0	1	6960500			34405	6227	20148	20149	41780	41780					0.05207740194418875
PTLGFPRG	8	Unmodified	_PTLGFPRG_					0	0	0			REV__ENSG00000251322|ENST00000262795|SHANK3	REV__ENSG00000251322|ENST00000262795|SHANK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.7374572753906	2	422.73742	843.460287	0.23296	9.8482E-05	0.31115	0.00013153	0.54411	0.00023002	422.737413104574	47.807	1.0602	47.851	47.611	48.672	0.04332					85	39	3	0	0	0	0.32038	1	10961	10961		28.487	3.813	1	5987900	+		34406	19221	20149	20150	41781	41781					0.03229550417131577
PTLITYFAS	9	Unmodified	_PTLITYFAS_					0	0	0			REV__nc|ENSG00000227152|P0C7T2|OR2T7	REV__nc|ENSG00000227152|P0C7T2|OR2T7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2283020019531	2	506.771126	1011.5277	0.70066	0.00035507	-1.9063	-0.00096604	-1.2056	-0.00061096	506.7700787508079	78.692	0.26393	78.661	78.48	78.744	-0.030434					11	9	2	0	0	0	0.25066	1	20342	20342		11.64	0.81637	1	66959	+		34407	17625	20150	20151	41782	41782					0.02239535837418316
PTLLPKPF	8	Unmodified	_PTLLPKPF_					0	0	0			REV__ENST00000572684.1_1_17:1944307-1944574:+|nuORF	REV__ENST00000572684.1_1_17:1944307-1944574:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2690124511719	2	456.781296	911.54804	0.31537	0.00014406	-0.53835	-0.00024591	-0.22297	-0.00010185	456.7810548508938	37.779	0.33882	37.779	37.587	37.926	0					18	11	2	0	0	0	0.33245	1	7799	7799		13.508	0	1	96179	+		34408	14621	20151	20152	41783	41783					0.08872751287890424
PTLPQDAL	8	Unmodified	_PTLPQDAL_					0	0	0			REV__ENSG00000138629|ENST00000395081|UBL7	REV__ENSG00000138629|ENST00000395081|UBL7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.26458740234375	2	427.734543	853.454533	0.22983	9.8308E-05	0.13528	5.7863E-05	0.36511	0.00015617	427.734571371756	47.248	0.67523	47.248	46.932	47.608	0					38	23	2	0	0	0	0.34185	1	10818	10818		5.7604	1.0044	1	313400	+		34409	15936	20152	20153	41784	41784					0.021944071148027433
PTLPQDAL	8	Unmodified	_PTLPQDAL_					0	0	0			REV__ENSG00000138629|ENST00000395081|UBL7	REV__ENSG00000138629|ENST00000395081|UBL7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	427.734543	853.454533	0.59388	0.00025402	0.42884	0.00018343	1.0227	0.00043745	427.73439694430385	47.094	0.54314	47.149	46.972	47.515	0.054375	-0.065485	1.7482E-05	NaN	5.7604	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189300	+		34410	15936	20152	20153							0.021944071148027433
PTLRTRGVP	9	Unmodified	_PTLRTRGVP_					0	0	0		ENST00000522079.5_1_8:136569738-136660819:+|nuORF;nc|ENSG00000131773|O75525-2|KHDRBS3;ENSG00000131773|ENST00000355849|KHDRBS3	ENST00000522079.5_1_8:136569738-136660819:+|nuORF	ENST00000522079.5_1_8:136569738-136660819:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8034362792969	2	498.801083	995.587613	0.26522	0.00013229	-0.31703	-0.00015814	-0.05182	-2.5848E-05	498.80115150312076	23.981	1.5212	23.981	23.542	25.064	0					194	52	6	0	0	0	0.27726	1	3555	3555		12.241	0.60036	1	5859500			34411	3589	20153	20154	41785	41785					0.08964271291324621
PTLWHHRPPS	10	Unmodified	_PTLWHHRPPS_					0	0	0		ENST00000392680.6_2_11:126159701-126160841:+|nuORF;ENST00000488598.5_1_11:126159678-126160841:+|nuORF	ENST00000392680.6_2_11:126159701-126160841:+|nuORF	ENST00000392680.6_2_11:126159701-126160841:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9080505371094	3	409.884235	1226.63087	-0.093787	-3.8442E-05	-1.7511	-0.00071774	-1.8449	-0.00075618	409.8835683133996	17.317	0.83471	17.199	16.828	17.663	-0.11739					44	29	3	0	0	0	0.32068	1	1485	1485		3.5871	0.85186	1	50989			34412	10034	20154	20155	41786	41786					0.026624610685985317
PTLWHHRPPS	10	Unmodified	_PTLWHHRPPS_					0	0	0		ENST00000392680.6_2_11:126159701-126160841:+|nuORF;ENST00000488598.5_1_11:126159678-126160841:+|nuORF	ENST00000392680.6_2_11:126159701-126160841:+|nuORF	ENST00000392680.6_2_11:126159701-126160841:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	409.884235	1226.63087	-0.080142	-3.2849E-05	-2.6501	-0.0010862	-2.7303	-0.0011191	409.8833433599458	17.12	0.32005	17.12	16.952	17.272	0	-0.018287	-6.5317E-05	NaN	3.5871	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53347			34413	10034	20154	20155							0.026624610685985317
PTLYVFGLTSI	11	Unmodified	_PTLYVFGLTSI_					0	0	0			REV__ENSG00000140519|ENST00000268122|RHCG	REV__ENSG00000140519|ENST00000268122|RHCG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.8368530273438	2	605.839539	1209.66453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.883	1	12.784	12.284	13.284	-0.099291								0	0	0	0.34766	1	261	261		8.7454	3.8484	1		+		34414	16038	20155	20156	41787	41787					0.06808024997144457
PTNTVQVN	8	Unmodified	_PTNTVQVN_					0	0	0			REV__nc|ENSG00000182175|Q96B86-3|RGMA	REV__nc|ENSG00000182175|Q96B86-3|RGMA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2533874511719	2	436.727249	871.439946	-0.19251	-8.4072E-05	0.1186	5.1796E-05	-0.073904	-3.2276E-05	436.72721771510936	25.798	0.59835	25.798	25.562	26.161	0					27	20	2	0	0	0	0.31617	1	4243	4243		26.884	2.8631	1	190250	+		34415	18180	20156	20157	41788	41788					-0.0009166503333517539
PTNTVQVN	8	Unmodified	_PTNTVQVN_					0	0	0			REV__nc|ENSG00000182175|Q96B86-3|RGMA	REV__nc|ENSG00000182175|Q96B86-3|RGMA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.25335693359375	2	436.727249	871.439946	-0.21992	-9.6045E-05	-0.099812	-4.3591E-05	-0.31973	-0.00013964	436.7271702322966	25.822	0.5974	25.784	25.556	26.153	-0.03867					35	20	2	0	0	0	0.34039	1	4245	4245		15.847	1.9411	1	242250	+		34416	18180	20156	20157	41789	41789					-0.0009166503333517539
PTPEHEGKF	9	Unmodified	_PTPEHEGKF_					0	0	0			REV__ENSG00000162641|ENST00000370001|AKNAD1	REV__ENSG00000162641|ENST00000370001|AKNAD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.8507690429688	2	521.253631	1040.49271	0.66465	0.00034645	-0.088601	-4.6183E-05	0.57605	0.00030027	521.253584181896	54.641	0.64053	54.625	54.31	54.95	-0.015923					50	22	3	0	0	0	0.23784	1	12944	12944		19.257	7.6167	1	739090	+		34417	16995	20157	20158	41790	41790					-0.025917069705201357
PTPFRVGAF	9	Unmodified	_PTPFRVGAF_					0	0	0			REV__ENST00000336509.8_1_17:74733889-74734425:+|nuORF	REV__ENST00000336509.8_1_17:74733889-74734425:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2721252441406	2	496.271627	990.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.801	1	47.849	47.349	48.349	0.047523								0	0	0	0.16039	1	10882	10882		32.305	1.6689	1		+		34418	20074	20158	20159	41791	41791					0.03305794997004341
PTPFRVGAF	9	Unmodified	_PTPFRVGAF_					0	0	0			REV__ENST00000336509.8_1_17:74733889-74734425:+|nuORF	REV__ENST00000336509.8_1_17:74733889-74734425:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2723083496094	2	496.271627	990.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.008	1	48.056	47.556	48.556	0.047523								0	0	0	0.16039	1	10949	10949		32.305	2.0807	1		+		34419	20074	20158	20159	41792	41792					0.03305794997004341
PTPIILTD	8	Unmodified	_PTPIILTD_					0	0	0		ENSG00000164061|ENST00000296452|BSN	ENSG00000164061|ENST00000296452|BSN	ENSG00000164061|ENST00000296452|BSN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.55902099609375	2	435.252569	868.490584	-0.11968	-5.2091E-05	-3.4855	-0.0015171	-3.6052	-0.0015692	435.25109494508604	16.37	0.46518	16.308	16.121	16.586	-0.062534					21	15	2	0	0	0	0.34218	1	1334	1334		9.3474	0	1	36432			34420	5776	20159	20160	41793	41793					0.05107864291653641
PTPLFHFPQPL	11	Unmodified	_PTPLFHFPQPL_					0	0	0			REV__ENST00000240123.11_2_8:22432250-22432496:+|nuORF	REV__ENST00000240123.11_2_8:22432250-22432496:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.2272033691406	3	431.904524	1292.69174	-0.19058	-8.2313E-05	-0.45205	-0.00019524	-0.64263	-0.00027756	431.90413988188357	21.975	0.6007	21.925	21.689	22.29	-0.049376					52	21	3	0	0	0	0.33287	1	3102	3102		2.8433	1.5136	1	173680	+		34421	19490	20160	20161	41794	41794					0.057105533281628595
PTPLLHCSF	9	Unmodified	_PTPLLHCSF_					0	0	0			REV__nc|ENSG00000237787|P0CE67|LINC02877	REV__nc|ENSG00000237787|P0CE67|LINC02877	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7419128417969	2	507.757495	1013.50044	0.22383	0.00011365	2.6803	0.0013609	2.9041	0.0014746	507.75890508533695	17.972	0.38738	17.972	17.771	18.158	0					24	12	3	0	0	0	0.34681	1	1809	1809		1.8442	0	1	37742	+		34422	23207	20161	20162	41795	41795					-0.0057727097459974175
PTPLLHCSF	9	Unmodified	_PTPLLHCSF_					0	0	0			REV__nc|ENSG00000237787|P0CE67|LINC02877	REV__nc|ENSG00000237787|P0CE67|LINC02877	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.757495	1013.50044	0.22383	0.00011365	2.6803	0.0013609	2.9041	0.0014746	507.75890508533695	17.972	0.38738	17.972	17.771	18.158	0	-0.047091	-0.00057827	NaN	1.8442	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37742	+		34423	23207	20161	20162							-0.0057727097459974175
PTPLLHCSF	9	Unmodified	_PTPLLHCSF_					0	0	0			REV__nc|ENSG00000237787|P0CE67|LINC02877	REV__nc|ENSG00000237787|P0CE67|LINC02877	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	507.757495	1013.50044	0.096698	4.9099E-05	3.288	0.0016695	3.3847	0.0017186	507.75897652574645	18.062	0.45859	17.944	17.784	18.242	-0.11739	-0.074686	3.8895E-05	NaN	1.8442	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54195	+		34424	23207	20161	20162							-0.0057727097459974175
PTPLLHCSF	9	Unmodified	_PTPLLHCSF_					0	0	0			REV__nc|ENSG00000237787|P0CE67|LINC02877	REV__nc|ENSG00000237787|P0CE67|LINC02877	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.757495	1013.50044	0.05541	2.8135E-05	3.5642	0.0018098	3.6196	0.0018379	507.75918951577665	18.199	0.41082	18.141	17.874	18.285	-0.058174	0.12178	0.00031941	NaN	1.8442	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32302	+		34425	23207	20161	20162							-0.0057727097459974175
PTPPAATPPSL	11	Unmodified	_PTPPAATPPSL_					0	0	0		ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	ENSG00000196531|ENST00000454682|NACA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8004760742188	2	524.787307	1047.56006	0.59254	0.00031096	0.31601	0.00016584	0.90855	0.0004768	524.7874996688537	71.862	0.32318	71.835	71.658	71.981	-0.027275					20	11	2	0	0	0	0.26921	1	18264	18264		24.991	0.97039	1	246800			34426	7875	20162	20163	41796	41796					0.038183232404207956
PTQPPPKPK	9	Unmodified	_PTQPPPKPK_					0	0	0		ENST00000459673.1_1_10:85972822-85974374:+|nuORF;ENSG00000148600|ENST00000623527|CDHR1	ENST00000459673.1_1_10:85972822-85974374:+|nuORF	ENST00000459673.1_1_10:85972822-85974374:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2396240234375	2	495.292559	988.570566	0.3505	0.0001736	-0.044545	-2.2063E-05	0.30596	0.00015154	495.2924362464515	19.947	0.4175	19.947	19.739	20.157	0					24	15	2	0	0	0	0.26168	1	2336	2336		1.8442	0.36234	1	113920			34427	4820	20163	20164	41797	41797					0.07582350685515848
PTQQARPTV	9	Unmodified	_PTQQARPTV_					0	0	0		ENSG00000131791|ENST00000254101|PRKAB2	ENSG00000131791|ENST00000254101|PRKAB2	ENSG00000131791|ENST00000254101|PRKAB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7672424316406	2	499.274898	996.535243	0.55565	0.00027742	0.32778	0.00016365	0.88342	0.00044107	499.2750661398663	29.15	0.29563	29.15	28.978	29.273	0					15	10	2	0	0	0	0.24311	1	5160	5160		11.64	0	1	92259			34428	3592	20164	20165	41798	41798					0.036836881577073655
PTQRSDSI	8	Unmodified	_PTQRSDSI_					0	0	0		ENSG00000159461|ENST00000290649|AMFR;ENST00000566334.1_1_16:56401340-56419833:-|nuORF	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2322082519531	2	452.230156	902.445759	-0.010366	-4.6879E-06	-0.3381	-0.0001529	-0.34846	-0.00015759	452.2300374562723	18.751	0.85126	18.634	18.038	18.89	-0.11739					95	29	5	0	0	0	0.43043	1	2010	2010		12.532	1.7076	1	439340			34429	5411	20165	20166	41799	41799					-0.009365665216591879
PTQVQLRDVLL	11	Unmodified	_PTQVQLRDVLL_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.88232421875	2	641.379894	1280.74524	0.54104	0.00034701	-1.1097	-0.00071172	-0.56863	-0.00036471	641.8820132114935	95.724	0.93621	95.721	95.347	96.283	-0.0038147					131	88	3	0	0	0	0.47742	1	25609	25609		1.0715	0	1	160930			34430	4093	20166	20167	41800	41800					0.11609306040054435
PTRPELQI	8	Unmodified	_PTRPELQI_					0	0	0		ENSG00000167825|ENST00000301532|OR5I1	ENSG00000167825|ENST00000301532|OR5I1	ENSG00000167825|ENST00000301532|OR5I1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.8028564453125	2	477.274367	952.53418	0.37568	0.0001793	0.41942	0.00020018	0.7951	0.00037948	477.27452455965215	45.43	0.37264	45.495	45.33	45.703	0.065048					21	13	2	0	0	0	0.29634	1	10155	10155		26.884	0	1	273850			34431	6215	20167	20168	41801	41801					0.05601473788817657
PTRPKTRPNK	10	Unmodified	_PTRPKTRPNK_					0	0	0			REV__ENST00000504208.5_1_5:136964069-137033992:-|nuORF	REV__ENST00000504208.5_1_5:136964069-137033992:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.3585815429688	2	597.856921	1193.69929	0.069481	4.154E-05	-0.4351	-0.00026013	-0.36562	-0.00021859	598.3583694256314	102.15	0.5094	102.15	101.88	102.39	0					118	73	2	0	0	0	0.41085	1	27197	27197		1.4819	0	1	98639	+		34432	16321	20168	20169	41802	41802					0.11018705648439209
PTRRIRFRSV	10	Unmodified	_PTRRIRFRSV_					0	0	0			REV__ENST00000571654.1_1_16:30666672-30667261:+|nuORF	REV__ENST00000571654.1_1_16:30666672-30667261:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.5488586425781	3	429.930067	1286.76837	-0.20369	-8.7572E-05	-2.3547	-0.0010123	-2.5584	-0.0010999	429.9288416755709	16.381	1.2843	16.381	15.867	17.151	0					105	44	4	0	0	0	0.31994	1	1374	1374		1.4551	0	1	477070	+		34433	16759	20169	20170	41803	41803					0.13645789667998542
PTRRIRFRSV	10	Unmodified	_PTRRIRFRSV_					0	0	0			REV__ENST00000571654.1_1_16:30666672-30667261:+|nuORF	REV__ENST00000571654.1_1_16:30666672-30667261:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.548828125	3	429.930067	1286.76837	-0.25677	-0.00011039	-2.1593	-0.00092835	-2.4161	-0.0010387	429.92894344794223	16.543	1.193	16.428	15.921	17.114	-0.11434					105	41	4	0	0	0	0.31942	1	1413	1413		1.7423	0	1	623280	+		34434	16759	20169	20170	41804	41804					0.13645789667998542
PTRRIRFRSV	10	Unmodified	_PTRRIRFRSV_					0	0	0			REV__ENST00000571654.1_1_16:30666672-30667261:+|nuORF	REV__ENST00000571654.1_1_16:30666672-30667261:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.5490417480469	3	429.930067	1286.76837	-0.09652	-4.1497E-05	-2.1681	-0.00093211	-2.2646	-0.00097361	429.92888191489584	16.461	1.2341	16.398	15.943	17.178	-0.062534					120	43	4	0	0	0	0.31942	1	1413	1413		0.62683	0	1	548420	+		34435	16759	20169	20170	41805	41805					0.13645789667998542
PTRRPATA	8	Unmodified	_PTRRPATA_					0	0	0			REV__ENST00000544935.5_1_7:589271-589664:-|nuORF	REV__ENST00000544935.5_1_7:589271-589664:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.55902099609375	2	435.251226	868.487899	-0.2017	-8.7791E-05	-0.34799	-0.00015146	-0.54969	-0.00023925	435.25115012208875	16.568	0.3954	16.453	16.191	16.586	-0.11434					28	13	3	0	0	0	0.344	1	1390	1390		2.5775	0	1	39452	+		34436	22162	20170	20171	41806	41806					0.04839453677357142
PTRSHRLF	8	Unmodified	_PTRSHRLF_					0	0	0			REV__ENST00000497331.2_1_1:18688571-18704817:+|nuORF	REV__ENST00000497331.2_1_1:18688571-18704817:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.8053894042969	2	507.2856	1012.55665	-0.012411	-6.2962E-06	-1.9623	-0.00099544	-1.9747	-0.0010017	507.2845654735274	28.021	0.36597	28.017	27.94	28.306	-0.0042572					14	12	2	0	0	0	0.34319	1	4867	4867		5.7604	3.4577	1	75483	+		34437	14959	20171	20172	41807	41807					0.05087117977075195
PTRYEVPK	8	Unmodified	_PTRYEVPK_					0	0	0		LRP1B|p.G4353V|1|0.31|ENSG00000168702|chr2:140274508-140274508|C/A|missense_variant	LRP1B|p.G4353V|1|0.31|ENSG00000168702|chr2:140274508-140274508|C/A|missense_variant	LRP1B|p.G4353V|1|0.31|ENSG00000168702|chr2:140274508-140274508|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.23974609375	2	495.274367	988.53418	0.39763	0.00019693	-0.17495	-8.6648E-05	0.22268	0.00011029	495.2742533072262	19.653	0.55803	19.537	19.311	19.869	-0.11592					29	18	2	0	0	0	0.34337	1	2343	2343		5.2307	0	1	62522			34438	12504	20172	20173	41808	41808					0.03945473788803611
PTSISLIN	8	Unmodified	_PTSISLIN_					0	0	0			REV__ENST00000486676.5_1_1:45821090-45923457:-|nuORF	REV__ENST00000486676.5_1_1:45821090-45923457:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.7423095703125	2	422.742368	843.470183	0.19132	8.0881E-05	-0.3345	-0.00014141	-0.14318	-6.0528E-05	422.7421519404206	75.371	0.84949	75.339	75.031	75.881	-0.031479					86	31	4	0	0	0	0.18275	1	19446	19446		46.021	0	1	2397300	+		34439	21554	20173	20174	41809	41809					0.042186936318557855
PTSLKILMI	9	Unmodified	_PTSLKILMI_					0	0	0			REV__ENST00000290968.4_7:142478839-142482361:+|nuORF	REV__ENST00000290968.4_7:142478839-142482361:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.79034423828125	2	508.314646	1014.61474	0.57171	0.00029061	-0.75688	-0.00038473	-0.18516	-9.4122E-05	508.815918623091	54.208	0.54704	54.208	53.858	54.405	0					38	19	3	0	0	0	0.24739	1	12906	12906		8.5933	0.68312	1	309310	+		34440	19754	20174	20175	41810	41810					0.10801618787490952
PTSPIRVK	8	Unmodified	_PTSPIRVK_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.27923583984375	2	449.279452	896.544351	0.25396	0.0001141	-0.44197	-0.00019857	-0.18801	-8.4468E-05	449.27915963294845	26.319	0.77061	26.297	25.991	26.762	-0.022236					55	26	4	0	0	0	0.069188	2	4303	4303;4348		69.105	3.9087	1	384050			34441	7913	20175	20176	41811;41812	41811					0.09194081514044683
PTSTGLKLPP	10	Unmodified	_PTSTGLKLPP_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2337341308594	2	505.797675	1009.5808	0.21075	0.0001066	0.43038	0.00021769	0.64113	0.00032428	505.79828933685707	19.325	1.1688	19.21	18.812	19.981	-0.11592					55	40	2	0	0	0	0.32054	1	2211	2211		3.2813	0	1	51216	+		34442	18066	20176	20177	41813	41813					0.07638913620087351
PTTAPLYL	8	Unmodified	_PTTAPLYL_					0	0	0			REV__nc|ENSG00000095397|Q9P202-2|WHRN	REV__nc|ENSG00000095397|Q9P202-2|WHRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.247314453125	2	438.247286	874.48002	0.43864	0.00019223	-0.34122	-0.00014954	0.097419	4.2693E-05	438.2471161015606	77.802	0.59384	77.802	77.496	78.09	0					37	21	2	0	0	0	0.33245	1	20108	20108		19.439	0	1	248890	+		34443	14100	20177	20178	41814	41814					0.037758816372161164
PTTAPLYL	8	Unmodified	_PTTAPLYL_					0	0	0			REV__nc|ENSG00000095397|Q9P202-2|WHRN	REV__nc|ENSG00000095397|Q9P202-2|WHRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.24749755859375	2	438.247286	874.48002	0.56088	0.00024581	-0.35398	-0.00015513	0.20691	9.0676E-05	438.24707839302323	77.808	0.65892	77.777	77.51	78.169	-0.031334					37	23	2	0	0	0	0.39956	1	20083	20083		19.439	0	1	216890	+		34444	14100	20177	20178	41815	41815					0.037758816372161164
PTTAPLYL	8	Unmodified	_PTTAPLYL_					0	0	0			REV__nc|ENSG00000095397|Q9P202-2|WHRN	REV__nc|ENSG00000095397|Q9P202-2|WHRN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	438.247286	874.48002	0.43013	0.0001885	-0.57538	-0.00025216	-0.14525	-6.3656E-05	438.2470272514733	77.74	0.54501	77.795	77.541	78.086	0.05542	0.0040584	-0.00013889	NaN	19.439	36	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255290	+		34445	14100	20177	20178							0.037758816372161164
PTTAPLYL	8	Unmodified	_PTTAPLYL_					0	0	0			REV__nc|ENSG00000095397|Q9P202-2|WHRN	REV__nc|ENSG00000095397|Q9P202-2|WHRN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	438.247286	874.48002	0.56088	0.00024581	-0.35398	-0.00015513	0.20691	9.0676E-05	438.24707839302323	77.808	0.65892	77.777	77.51	78.169	-0.031334	-0.014833	5.5175E-05	NaN	19.439	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216890	+		34446	14100	20177	20178							0.037758816372161164
PTTSISEREL	10	Unmodified	_PTTSISEREL_					0	0	0			REV__ENSG00000278053|ENST00000617633|DDX52	REV__ENSG00000278053|ENST00000617633|DDX52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2847290039062	2	566.79586	1131.57717	0.085974	4.873E-05	-1.5608	-0.00088463	-1.4748	-0.0008359	566.7957776553953	14.507	0.69175	14.403	14.131	14.823	-0.10466					62	23	4	0	0	0	0.37133	1	849	849		8.7454	0.58988	1	98697	+		34447	19345	20178	20179	41816	41816					0.016641990555854136
PTTSRLRPR	9	Unmodified	_PTTSRLRPR_					0	0	0		nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.262451171875	2	542.322714	1082.63087	0.19965	0.00010828	-0.36601	-0.0001985	-0.16636	-9.0223E-05	542.3224079790028	12.999	0.31158	12.9	12.785	13.097	-0.099291					16	10	2	0	0	0	0.25938	1	275	275		4.3292	2.0265	1	45194			34448	916	20179	20180	41817	41817					0.09286461068609242
PTTSTGYQPA	10	Unmodified	_PTTSTGYQPA_					0	0	0		ENSG00000128594|ENST00000249363|LRRC4	ENSG00000128594|ENST00000249363|LRRC4	ENSG00000128594|ENST00000249363|LRRC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.82720947265625	2	511.743096	1021.47164	0.28981	0.00014831	-1.2066	-0.00061748	-0.9168	-0.00046917	512.2426758895883	32.836	0.13261	32.891	32.786	32.919	0.055309					8	4	3	0	0	0	0.3156	1	6296	6296		10.824	6.0679	1	109230			34449	3378	20180	20181	41818	41818					-0.038237170700540446
PTVQVLLL	8	Unmodified	_PTVQVLLL_					0	0	0		ENST00000332674.9_2_10:112045956-112046085:+|nuORF	ENST00000332674.9_2_10:112045956-112046085:+|nuORF	ENST00000332674.9_2_10:112045956-112046085:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.77398681640625	2	441.786579	881.558604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.271	1	51.317	50.817	51.817	0.046574								0	0	0	0.30483	1	11951	11951		28.173	0	1				34450	9451	20181	20182	41819	41819					0.11308733942325944
PTVWRCAV	8	Unmodified	_PTVWRCAV_					0	0	0			REV__ENST00000558992.1_1_15:89179450-89180612:+|nuORF	REV__ENST00000558992.1_1_15:89179450-89180612:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.747802734375	2	466.244555	930.474557	0.22412	0.00010449	-2.0673	-0.00096386	-1.8432	-0.00085937	466.2432018530829	21.494	0.11855	21.444	21.373	21.492	-0.049377					5	3	2	0	0	0	0.34337	1	2846	2846		5.2307	0	1	61914	+		34451	22286	20182	20183	41820	41820					0.006538795737697001
PTWIRVHQDL	10	Unmodified	_PTWIRVHQDL_					0	0	0			REV__ENSG00000226372|ENST00000441525|DCAF8L1	REV__ENSG00000226372|ENST00000441525|DCAF8L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.8458251953125	2	632.843479	1263.67241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.795	1	16.681	16.181	17.181	-0.11434								0	0	0	0.38196	1	1437	1437		0	0	1		+		34452	19119	20183	20184	41821	41821					0.051115970372848096
PTYRDVIKEAK	11	Unmodified	_PTYRDVIKEAK_					0	0	0		ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	ENSG00000166262|ENST00000299338|FAM227B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.263671875	3	440.58211	1318.7245	0.074743	3.293E-05	0.096907	4.2695E-05	0.17165	7.5626E-05	440.5820559980925	19.347	1.0451	19.291	18.989	20.034	-0.055693					102	36	4	0	0	0	0.42863	1	2304	2304		7.4771	0.85361	1	591020			34453	6052	20184	20185	41822	41822					0.0778871566037651
PTYSAGYNV	9	Unmodified	_PTYSAGYNV_					0	0	0			REV__nc|ENSG00000138722|Q13201-2|MMRN1	REV__nc|ENSG00000138722|Q13201-2|MMRN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2567138671875	2	486.227082	970.439611	0.11396	5.5413E-05	-1.9077	-0.00092755	-1.7937	-0.00087214	486.2230210918283	31.167	0.2249	31.167	31.007	31.231	0					15	7	3	0	0	0	0.24913	1	5786	5786		7.9102	0	1	61041	+		34454	15950	20185	20186	41823	41823					-0.04679084753183815
PVAALLSLAP	10	Unmodified	_PVAALLSLAP_					0	0	0			REV__ENST00000311626.8_1_17:46629537-46651367:-|nuORF	REV__ENST00000311626.8_1_17:46629537-46651367:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7405090332031	2	476.29731	950.580068	0.32381	0.00015423	-0.34318	-0.00016346	-0.019368	-9.2247E-06	476.297293656381	29.598	0.50441	29.598	29.355	29.86	0					25	17	2	0	0	0	0.318	1	5244	5244		7.2892	2.96	1	130290	+		34455	19902	20186	20187	41824	41824					0.10280118971024876
PVAANQREV	9	Unmodified	_PVAANQREV_					0	0	0		nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB	nc|ENSG00000168477|P22105-1|TNXB	nc|ENSG00000168477|P22105-1|TNXB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.6739501953125	2	492.267073	982.519593	0.23661	0.00011648	-0.62864	-0.00030946	-0.39203	-0.00019298	492.26662660948944	17.732	0.56713	17.672	17.384	17.951	-0.060429					34	19	2	0	0	0	0.25291	1	1697	1697		9.3474	1.4373	1	69613			34456	6278	20187	20188	41825	41825					0.027634016406636874
PVAASRGAR	9	Unmodified	_PVAASRGAR_					0	0	0		ENST00000420702.5_2_6:136571227-136571401:-|nuORF	ENST00000420702.5_2_6:136571227-136571401:-|nuORF	ENST00000420702.5_2_6:136571227-136571401:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7750549316406	2	442.756675	883.498798	-0.090197	-3.9935E-05	0.29036	0.00012856	0.20016	8.8623E-05	442.7568135466781	14.619	0.42346	14.619	14.395	14.819	0					32	14	3	0	0	0	0.24739	1	839	839		8.5933	0	1	100570			34457	10362	20188	20189	41826	41826					0.05238856051653329
PVAAVAAQMQ	10	Unmodified	_PVAAVAAQMQ_					0	0	0		nc|ENSG00000140488|Q96J87-4|CELF6;nc|ENSG00000140488|Q96J87-2|CELF6;nc|ENSG00000140488|Q96J87-3|CELF6;ENSG00000140488|ENST00000287202|CELF6	nc|ENSG00000140488|Q96J87-4|CELF6	nc|ENSG00000140488|Q96J87-4|CELF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.6739501953125	2	493.260402	984.506251	0.22816	0.00011254	-1.2639	-0.00062343	-1.0357	-0.00051089	493.26000118892136	17.777	0.84069	17.717	17.384	18.225	-0.060431					63	29	3	0	0	0	0.31745	1	1697	1697		7.9102	0	1	180960			34458	4310	20189	20190	41827	41827					0.013378275370541814
PVAAVCASEL	10	Unmodified	_PVAAVCASEL_					0	0	0		nc|ENSG00000196642|Q3YEC7-3|RABL6	nc|ENSG00000196642|Q3YEC7-3|RABL6	nc|ENSG00000196642|Q3YEC7-3|RABL6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2558898925781	2	480.24696	958.479368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.541	1	65.53	65.03	66.03	-0.011337								0	0	0	0.26329	1	16345	16345		32.305	1.6689	1				34459	12897	20190	20191	41828	41828					-0.0015328107413097314
PVAGAATPSL	10	Unmodified	_PVAGAATPSL_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2840270996094	2	442.247818	882.481082	-0.0032498	-1.4372E-06	-0.32733	-0.00014476	-0.33058	-0.0001462	442.2475215669934	42.699	0.32307	42.79	42.633	42.956	0.091362					20	11	2	0	0	0	0.30586	1	9340	9340		19.257	7.0163	1	170290			34460	1673	20191	20192	41829	41829					0.0351409600613124
PVALKKVQV	9	Unmodified	_PVALKKVQV_					0	0	0		nc|ENSG00000151414|Q8TDX7-2|NEK7	nc|ENSG00000151414|Q8TDX7-2|NEK7	nc|ENSG00000151414|Q8TDX7-2|NEK7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.78570556640625	2	491.326402	980.638252	0.44502	0.00021865	-0.25613	-0.00012584	0.18888	9.2804E-05	491.3261216579727	68.838	0.53432	68.91	68.649	69.183	0.071938					23	19	2	0	0	0	0.25938	1	17420	17420		4.3292	0	1	189030			34461	12758	20192	20193	41830	41830					0.1471580061631812
PVALPLQL	8	Unmodified	_PVALPLQL_					0	0	0			REV__ENST00000368787.3_1_1:152552252-152552420:-|nuORF	REV__ENST00000368787.3_1_1:152552252-152552420:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.7733459472656	2	425.773471	849.53239	-0.15443	-6.5752E-05	0.15713	6.69E-05	0.0026955	1.1477E-06	425.77347054876526	74.108	0.90726	74.16	73.796	74.703	0.052361					45	30	2	0	0	0	0.20019	1	18927	18927		42.968	2.5194	1	557630	+		34462	20348	20193	20194	41831	41831					0.10160464770854105
PVAPKAAPL	9	Unmodified	_PVAPKAAPL_					0	0	0			REV__nc|ENSG00000150275|Q96QU1-6|PCDH15	REV__nc|ENSG00000150275|Q96QU1-6|PCDH15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.2305908203125	2	432.271096	862.527639	0.14376	6.2143E-05	0.11648	5.0352E-05	0.26024	0.00011249	432.2712092296118	64.556	0.30269	64.649	64.471	64.773	0.09288					14	10	2	0	0	0	0.25879	1	16003	16003		4.756	0	1	76984	+		34463	16491	20194	20195	41832	41832					0.09087580628079195
PVAPKAQKKV	10	Unmodified	_PVAPKAQKKV_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;ENST00000586177.1_1_19:2117219-2118617:-|nuORF	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.30859375	2	533.342584	1064.67061	0.48921	0.00026092	1.105	0.00058935	1.5942	0.00085027	533.3422752582073	62.184	0.45136	62.184	61.945	62.396	0					34	16	3	0	0	0	0.31267	1	15291	15291		14.838	1.3304	1	163630			34464	802	20195	20196	41833	41833					0.1408658801931324
PVAPKAQKKV	10	Unmodified	_PVAPKAQKKV_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;ENST00000586177.1_1_19:2117219-2118617:-|nuORF	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3085327148438	2	533.342584	1064.67061	0.12589	6.7141E-05	1.388	0.00074028	1.5139	0.00080742	533.3424362481783	62.034	0.45879	62.131	61.924	62.383	0.096985					27	16	3	0	0	0	0.31267	1	15257	15257		14.838	13.356	1	139700			34465	802	20195	20196	41834	41834					0.1408658801931324
PVAPRTRTS	9	Unmodified	_PVAPRTRTS_					0	0	0		nc|ENSG00000100722|Q6PJT7-10|ZC3H14;nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.6739501953125	2	492.78289	983.551228	0.23482	0.00011572	0.10462	5.1554E-05	0.33944	0.00016727	492.78290182686993	17.624	1.2186	17.563	17.152	18.37	-0.060429					76	42	2	0	0	0	0.24913	1	1697	1697		12.532	0	1	193200			34466	12618	20196	20197	41835	41835					0.05879394394617066
PVASERLPP	9	Unmodified	_PVASERLPP_					0	0	0		ENSG00000134030|ENST00000256413|CTIF;nc|ENSG00000134030|O43310-2|CTIF;CTIF|p.D388Nfs*143|1|0.04|ENSG00000134030|chr18:48761469-48761470|-/CAACAGCAGCAACGTGGACACCAAGCTCACCACCTTCATGT|frameshift_variant	ENSG00000134030|ENST00000256413|CTIF	ENSG00000134030|ENST00000256413|CTIF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.66796875	2	483.274367	964.53418	0.37191	0.00017973	-1.304	-0.00063019	-0.93208	-0.00045045	483.27357347013805	21.547	0.4431	21.447	21.214	21.657	-0.10034					24	15	2	0	0	0	0.25291	1	2813	2813		9.3474	0	1	39383			34467	3749	20197	20198	41836	41836					0.05049473788801606
PVCLPLAIQKF	11	Unmodified	_PVCLPLAIQKF_					0	0	0		nc|ENSG00000178297|Q7Z410|TMPRSS9;ENSG00000178297|ENST00000696167|TMPRSS9	nc|ENSG00000178297|Q7Z410|TMPRSS9	nc|ENSG00000178297|Q7Z410|TMPRSS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2431335449219	3	410.24226	1227.70495	-0.1228	-5.0378E-05	2.2076	0.00090563	2.0848	0.00085525	410.2434328005391	33.351	0.60562	33.351	33.011	33.617	0					86	21	6	0	0	0	0.40701	1	6484	6484		10.315	3.2781	1	821500			34468	7050	20198	20199	41837	41837					0.100206681158852
PVCLPLAIQKF	11	Unmodified	_PVCLPLAIQKF_					0	0	0		nc|ENSG00000178297|Q7Z410|TMPRSS9;ENSG00000178297|ENST00000696167|TMPRSS9	nc|ENSG00000178297|Q7Z410|TMPRSS9	nc|ENSG00000178297|Q7Z410|TMPRSS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2361755371094	3	410.24226	1227.70495	0.09672	3.9679E-05	1.8718	0.00076789	1.9685	0.00080757	410.2431581667909	33.223	0.82665	33.279	32.758	33.585	0.055309					84	29	6	0	0	0	0.42863	1	6439	6439		7.4771	0.43998	1	924680			34469	7050	20198	20199	41838	41838					0.100206681158852
PVCSPVQGK	9	Carbamidomethyl (C)	_PVC(Carbamidomethyl (C))SPVQGK_	PVC(1)SPVQGK		PVC(56)SPVQGK		0	1	0		ENSG00000134369|ENST00000685211|NAV1;ENST00000491403.1_1_1:201592576-201598640:+|nuORF	ENSG00000134369|ENST00000685211|NAV1	ENSG00000134369|ENST00000685211|NAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2603759765625	2	486.252577	970.490601	0.28895	0.0001405	-3.6934	-0.0017959	-3.4045	-0.0016554	486.25130332702173	29.471	0.17263	29.483	29.417	29.589	0.012264					7	5	2	0	0	0	0.041175	1	5271	5271		56.177	27.69	1	56820			34470	3779	20199	20200	41839	41839	5				0.004175410200332408
PVDCYEGLPWP	11	Unmodified	_PVDCYEGLPWP_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2664794921875	3	425.861996	1274.56416	-0.10293	-4.3833E-05	0.047728	2.0326E-05	-0.055199	-2.3507E-05	426.19633305648085	51.968	0.36422	51.968	51.759	52.123	0					17	13	2	0	0	0	0.33277	1	12200	12200		3.0723	0	1	85365			34471	5501	20200	20201	41840	41840					-0.06213955328166776
PVDCYEGLPWP	11	Unmodified	_PVDCYEGLPWP_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	425.861996	1274.56416	-0.062663	-2.6686E-05	0.12708	5.4119E-05	0.064417	2.7433E-05	425.8619659359501	51.976	0.13429	52.027	51.926	52.06	0.050575	0.029416	3.6493E-05	NaN	3.0723	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69933			34472	5501	20200	20201							-0.06213955328166776
PVDEYQIF	8	Unmodified	_PVDEYQIF_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000442031.1_1_X:51665090-51665543:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7635498046875	2	505.745108	1009.47566	0.50264	0.00025421	-0.36472	-0.00018446	0.13791	6.9749E-05	505.74516672328485	65.751	0.95209	65.84	65.547	66.499	0.088882					49	34	2	0	0	0	0.34147	1	16583	16583		6.3541	1.1234	1	332840			34473	8284	20201	20202	41841	41841					-0.02869627576330913
PVDEYQIF	8	Unmodified	_PVDEYQIF_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000442031.1_1_X:51665090-51665543:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	505.745108	1009.47566	0.5814	0.00029404	0.034396	1.7396E-05	0.6158	0.00031144	505.74521810965456	65.843	0.60466	65.843	65.634	66.239	0	0.01197	6.8472E-05	NaN	6.3541	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346540			34474	8284	20201	20202							-0.02869627576330913
PVDEYQIF	8	Unmodified	_PVDEYQIF_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000442031.1_1_X:51665090-51665543:-|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	505.745108	1009.47566	0.44316	0.00022413	0.10454	5.2872E-05	0.54771	0.000277	505.7452454600942	65.822	0.79588	65.81	65.612	66.408	-0.011337	-0.020935	0.00013943	NaN	6.3541	42	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348150			34475	8284	20201	20202							-0.02869627576330913
PVDIAEVLLQK	11	Unmodified	_PVDIAEVLLQK_					0	0	0			REV__nc|ENSG00000132470|P16144-4|ITGB4	REV__nc|ENSG00000132470|P16144-4|ITGB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5316162109375	3	408.911456	1223.71254	-0.10916	-4.4637E-05	-1.0356	-0.00042347	-1.1448	-0.0004681	409.24478084939904	29.26	0.36709	29.274	29.14	29.507	0.013474					16	12	2	0	0	0	0.32951	1	5218	5218		7.0371	0	1	38273	+		34476	15574	20202	20203	41842	41842					0.10963098917181924
PVDLDASTKA	10	Unmodified	_PVDLDASTKA_					0	0	0			REV__L1PA6_dup2662|chr6:160208729-160214880:-|1.2665007636170862|0.0221250906454286|5.84|510.0|63|2|sense	REV__L1PA6_dup2662|chr6:160208729-160214880:-|1.2665007636170862|0.0221250906454286|5.84|510.0|63|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.78155517578125	2	508.766571	1015.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.597	1	33.664	33.164	34.164	0.066704								0	0	0	0.3629	1	6529	6529		9.3831	0.035688	1		+		34477	22818	20203	20204	41843	41843					0.011451424810957178
PVDLERAPS	9	Unmodified	_PVDLERAPS_					0	0	0			REV__nc|ENSG00000124177|Q8TD26-3|CHD6	REV__nc|ENSG00000124177|Q8TD26-3|CHD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.6741638183594	2	492.261456	982.50836	0.16476	8.1104E-05	0.39169	0.00019282	0.55645	0.00027392	492.26170623493675	17.015	0.19279	16.897	16.8	16.993	-0.11739					10	6	2	0	0	0	0.25706	1	1490	1490		6.7232	6.7232	1	29256	+		34478	15212	20204	20205	41844	41844					0.016405795465175288
PVDPRKVLI	9	Unmodified	_PVDPRKVLI_					0	0	0		nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	nc|ENSG00000136636|Q9Y597-2|KCTD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.3214721679688	2	518.829309	1035.64407	0.47031	0.00024401	-0.68085	-0.00035325	-0.21054	-0.00010923	518.8289176943676	57.475	0.55279	57.475	57.19	57.743	0					21	19	2	0	0	0	0.25811	1	13911	13911		5.2307	0.90143	1	214510			34479	3987	20205	20206	41845	41845					0.12766899127996112
PVDRIFDDKW	10	Unmodified	_PVDRIFDDKW_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8882141113281	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.953	1	25.953	25.453	26.453	0								0	0	0	0.37044	1	4206	4206		3.3196	0	1				34480	4987	20206	20207	41846	41846					0.0072018456346540916
PVDYLSQY	8	Unmodified	_PVDYLSQY_					0	0	0		nc|ENSG00000123342|Q99542-4|MMP19;ENST00000547487.5_1_12:56235002-56236716:-|nuORF;nc|ENSG00000123342|Q99542-5|MMP19;ENSG00000123342|ENST00000322569|MMP19	nc|ENSG00000123342|Q99542-4|MMP19	nc|ENSG00000123342|Q99542-4|MMP19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.7378234863281	2	492.737283	983.460012	0.048183	2.3742E-05	1.2872	0.00063427	1.3354	0.00065801	492.73776214901125	15.112	0.5134	15.048	14.846	15.36	-0.064413					38	17	3	0	0	0	0.45015	1	920	920		5.7604	0.52976	1	385850			34481	3098	20207	20208	41847	41847					-0.032379140933926465
PVEAGEALAK	10	Unmodified	_PVEAGEALAK_					0	0	0		ENST00000219169.8_1_16:67905422-67905869:+|nuORF	ENST00000219169.8_1_16:67905422-67905869:+|nuORF	ENST00000219169.8_1_16:67905422-67905869:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.67401123046875	2	492.771657	983.528761	0.05237	2.5806E-05	-1.2816	-0.00063151	-1.2292	-0.00060571	492.7711285960021	15.201	0.34648	15.137	15.013	15.36	-0.064414					17	11	2	0	0	0	0.31358	1	976	976		13.906	9.5768	1	90289			34482	8830	20208	20209	41848	41848					0.036337502063247484
PVEAGTRSESL	11	Unmodified	_PVEAGTRSESL_					0	0	0			REV__nc|ENSG00000008838|O75448-2|MED24	REV__nc|ENSG00000008838|O75448-2|MED24	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.290283203125	2	573.293485	1144.57242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.35	1	118.33	117.83	118.83	-0.024147								0	0	0	0.38126	1	30596	30596		1.1933	0.39971	1		+		34483	13403	20209	20210	41849	41849					0.005913149127991346
PVEEIHSPF	9	Unmodified	_PVEEIHSPF_					0	0	0		nc|ENSG00000169402|B2RC85-2|RSPH10B2;ENSG00000169402|ENST00000404077|RSPH10B2;ENSG00000155026|ENST00000404406|RSPH10B	nc|ENSG00000169402|B2RC85-2|RSPH10B2	nc|ENSG00000169402|B2RC85-2|RSPH10B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7841796875	2	527.763832	1053.51311	0.65699	0.00034674	0.11458	6.047E-05	0.77157	0.00040721	527.7638558040655	40.283	0.41574	40.383	40.201	40.617	0.099407					25	14	2	0	0	0	0.25291	1	8528	8528		2.3027	1.8444	1	280990			34484	5154	20210	20211	41850	41850					-0.011505363107289668
PVEEIHSPF	9	Unmodified	_PVEEIHSPF_					0	0	0		nc|ENSG00000169402|B2RC85-2|RSPH10B2;ENSG00000169402|ENST00000404077|RSPH10B2;ENSG00000155026|ENST00000404406|RSPH10B	nc|ENSG00000169402|B2RC85-2|RSPH10B2	nc|ENSG00000169402|B2RC85-2|RSPH10B2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	527.763832	1053.51311	0.62553	0.00033013	0.009057	4.78E-06	0.63459	0.00033491	527.7638429144831	40.711	0.42937	40.711	40.445	40.875	0	0.19152	-7.9611E-05	NaN	5.2307	30	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187400			34485	5154	20210	20211							-0.011505363107289668
PVEEIHSPF	9	Unmodified	_PVEEIHSPF_					0	0	0		nc|ENSG00000169402|B2RC85-2|RSPH10B2;ENSG00000169402|ENST00000404077|RSPH10B2;ENSG00000155026|ENST00000404406|RSPH10B	nc|ENSG00000169402|B2RC85-2|RSPH10B2	nc|ENSG00000169402|B2RC85-2|RSPH10B2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	527.763832	1053.51311	0.642	0.00033883	0.10834	5.7179E-05	0.75034	0.000396	527.7639462352452	40.371	0.46177	40.464	40.176	40.637	0.09267	-0.055108	2.5186E-05	NaN	5.2307	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262930			34486	5154	20210	20211							-0.011505363107289668
PVEEQPKQI	9	Unmodified	_PVEEQPKQI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2820434570312	2	534.290214	1066.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.312	1	99.363	98.863	99.863	0.050888								0	0	0	0.23852	1	26573	26573		10.074	2.1638	1				34487	6781	20211	20212	41851	41851					0.03525421752101465
PVEHPDKFLKF	11	Unmodified	_PVEHPDKFLKF_					0	0	0		ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENSG00000165280|ENST00000358901|VCP	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENST00000493886.5_1_9:35057116-35062147:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.75836181640625	3	452.915201	1355.72377	0.25748	0.00011661	-3.2809	-0.001486	-3.0234	-0.0013693	452.9133653155759	23.796	0.43112	23.757	23.534	23.965	-0.038927					30	14	3	0	0	0	0.33287	1	3593	3593		2.8433	0.21205	1	69530			34488	5945	20212	20213	41852	41852					0.06013921011299317
PVEHTSIFI	9	Unmodified	_PVEHTSIFI_					0	0	0		ENST00000523232.1_1_8:137528301-137531442:+|nuORF	ENST00000523232.1_1_8:137528301-137531442:+|nuORF	ENST00000523232.1_1_8:137528301-137531442:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.8131713867188	2	521.782025	1041.5495	-0.62035	-0.00032369	-1.6006	-0.00083517	-2.221	-0.0011589	521.7809640530296	34.488	0.38358	34.563	34.273	34.657	0.075306					17	13	2	0	0	0	0.25526	1	6807	6807		7.9102	0	1	106450			34489	11508	20213	20214	41853	41853					0.030383405859993218
PVEIYSIIE	9	Unmodified	_PVEIYSIIE_					0	0	0			REV__nc|ENSG00000189144|Q86YE8-2|ZNF573	REV__nc|ENSG00000189144|Q86YE8-2|ZNF573	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8170166015625	2	531.789515	1061.56448	0.47678	0.00025355	1.0374	0.0005517	1.5142	0.00080524	531.7900397977879	79.993	0.66798	79.993	79.77	80.438	0					52	24	3	0	0	0	0.24311	1	20815	20815		16.942	1.0951	1	350930	+		34490	18598	20214	20215	41854	41854					0.03615787663352421
PVEKNTRRYL	10	Unmodified	_PVEKNTRRYL_					0	0	0			REV__nc|ENSG00000135775|Q14746-2|COG2	REV__nc|ENSG00000135775|Q14746-2|COG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.5472106933594	3	425.910449	1274.70952	-0.030337	-1.2921E-05	-3.1124	-0.0013256	-3.1428	-0.0013385	425.9094248291419	38.346	0.083595	38.437	38.399	38.483	0.090881					4	2	2	0	0	0	0.31942	1	7990	7990		1.7423	0	1	28308	+		34491	15763	20215	20216	41855	41855					0.08315268583055513
PVEKPRSAGDP	11	Unmodified	_PVEKPRSAGDP_					0	0	0		ENST00000412554.6_2_16:1918183-1922120:-|nuORF	ENST00000412554.6_2_16:1918183-1922120:-|nuORF	ENST00000412554.6_2_16:1918183-1922120:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.3544921875	2	576.80402	1151.59349	0.2248	0.00012967	-0.0076648	-4.4211E-06	0.21714	0.00012525	576.803938766943	38.167	0.28845	38.167	37.98	38.269	0					14	9	2	0	0	0	0.32996	1	7962	7962		8.1555	4.559	1	137410			34492	10278	20216	20217	41856	41856					0.023753250123490943
PVEKPRSAGDP	11	Unmodified	_PVEKPRSAGDP_					0	0	0		ENST00000412554.6_2_16:1918183-1922120:-|nuORF	ENST00000412554.6_2_16:1918183-1922120:-|nuORF	ENST00000412554.6_2_16:1918183-1922120:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3545532226562	2	576.80402	1151.59349	0.19783	0.00011411	0.42005	0.00024229	0.61788	0.00035639	576.8041617087844	38.023	0.36745	38.121	37.927	38.294	0.097527					19	12	2	0	0	0	0.32736	1	7913	7913		8.1555	5.1603	1	117670			34493	10278	20216	20217	41857	41857					0.023753250123490943
PVELVFSF	8	Unmodified	_PVELVFSF_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.76666259765625	2	469.255111	936.49567	-0.23209	-0.00010891	-2.1191	-0.00099438	-2.3511	-0.0011033	469.253311125103	27.675	0.70508	27.675	27.502	28.207	0					37	24	3	0	0	0	0.31934	1	4744	4744		18.135	2.2878	1	111510	+		34494	17138	20217	20218	41858	41858					0.024881681542865408
PVELVFSF	8	Unmodified	_PVELVFSF_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7666320800781	2	469.255111	936.49567	-0.17997	-8.4451E-05	-2.64	-0.0012388	-2.82	-0.0013233	469.25387501842096	27.69	0.75679	27.679	27.499	28.256	-0.01156					47	26	2	0	0	0	0.29855	1	4737	4737		24.674	5.2349	1	117330	+		34495	17138	20217	20218	41859	41859					0.024881681542865408
PVELYELY	8	Unmodified	_PVELYELY_					0	0	0			REV__MAGEC2|p.R287L|1|0.05|ENSG00000046774|chrX:142203128-142203128|C/A|missense_variant	REV__MAGEC2|p.R287L|1|0.05|ENSG00000046774|chrX:142203128-142203128|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7784423828125	2	513.263133	1024.51171	0.5136	0.00026361	0.5431	0.00027876	1.0567	0.00054237	513.2632977470755	36.861	0.61248	36.861	36.511	37.124	0					41	21	3	0	0	0	0.32778	1	7552	7552		14.582	1.0738	1	360180	+		34496	22852	20218	20219	41860	41860					0.0004382960053135321
PVELYELY	8	Unmodified	_PVELYELY_					0	0	0			REV__MAGEC2|p.R287L|1|0.05|ENSG00000046774|chrX:142203128-142203128|C/A|missense_variant	REV__MAGEC2|p.R287L|1|0.05|ENSG00000046774|chrX:142203128-142203128|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7785034179688	2	513.263133	1024.51171	0.62752	0.00032208	1.1049	0.0005671	1.7324	0.00088918	513.2630700482307	36.682	0.71204	36.775	36.51	37.222	0.093014					57	25	4	0	0	0	0.31375	1	7530	7530		19.439	5.9311	1	472810	+		34497	22852	20218	20219	41861	41861					0.0004382960053135321
PVEQETPAPV	10	Unmodified	_PVEQETPAPV_					0	0	0			REV__nc|ENSG00000283787|A8MZF0|PRR33	REV__nc|ENSG00000283787|A8MZF0|PRR33	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7839965820312	2	533.774396	1065.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.261	1	32.261	31.761	32.761	0								0	0	0	0.35611	1	6127	6127		12.241	2.8575	1		+		34498	19372	20219	20220	41862	41862					0.004094289981367183
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8341674804688	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.418	1	79.418	78.918	79.918	0								0	0	0	0.25197	1	20593	20593		5.7319	1.4026	1		+		34499	20834	20220	20221	41863	41863					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.834228515625	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.558	1	79.558	79.058	80.058	0								0	0	0	0.25197	1	20636	20636		5.7319	0.43497	1		+		34500	20834	20220	20221	41864	41864					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8338623046875	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.639	1	79.639	79.139	80.139	0								0	0	0	0.2489	1	20661	20661		6.7232	0.99131	1		+		34501	20834	20220	20221	41865	41865					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8340454101562	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.063	1	80.063	79.563	80.563	0								0	0	0	0.24066	1	20791	20791		9.3831	2.66	1		+		34502	20834	20220	20221	41866	41866					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8340454101562	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.385	1	80.385	79.885	80.885	0								0	0	0	0.22666	1	20890	20890		13.906	4.5229	1		+		34503	20834	20220	20221	41867	41867					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8335571289062	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.54	1	80.54	80.04	81.04	0								0	0	0	0.22666	1	20938	20938		13.906	5.7505	1		+		34504	20834	20220	20221	41868	41868					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.834228515625	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.706	1	80.706	80.206	81.206	0								0	0	0	0.22666	1	20990	20990		13.906	5.7505	1		+		34505	20834	20220	20221	41869	41869					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8341674804688	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.736	1	80.736	80.236	81.236	0								0	0	0	0.22666	1	20999	20999		13.906	5.7505	1		+		34506	20834	20220	20221	41870	41870					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8340454101562	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.095	1	81.095	80.595	81.595	0								0	0	0	0.25197	1	21108	21108		5.7319	0	1		+		34507	20834	20220	20221	41871	41871					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.833740234375	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.839	1	82.839	82.339	83.339	0								0	0	0	0.22666	1	21644	21644		13.906	4.5229	1		+		34508	20834	20220	20221	41872	41872					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8340454101562	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.996	1	82.996	82.496	83.496	0								0	0	0	0.22666	1	21693	21693		13.906	5.1606	1		+		34509	20834	20220	20221	41873	41873					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.835205078125	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.283	1	84.283	83.783	84.783	0								0	0	0	0.24066	1	22087	22087		9.3831	3.6513	1		+		34510	20834	20220	20221	41874	41874					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8347778320312	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.592	1	84.592	84.092	85.092	0								0	0	0	0.24066	1	22180	22180		9.3831	1.2276	1		+		34511	20834	20220	20221	41875	41875					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.834228515625	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.993	1	80.054	79.554	80.554	0.061417								0	0	0	0.22666	1	20757	20757		13.906	3.0821	1		+		34512	20834	20220	20221	41876	41876					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8341064453125	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.204	1	80.269	79.769	80.769	0.065094								0	0	0	0.24066	1	20823	20823		9.3831	0	1		+		34513	20834	20220	20221	41877	41877					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.833984375	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.537	1	80.602	80.102	81.102	0.065094								0	0	0	0.22666	1	20927	20927		13.906	5.7505	1		+		34514	20834	20220	20221	41878	41878					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8340454101562	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.677	1	80.742	80.242	81.242	0.065094								0	0	0	0.22666	1	20971	20971		13.906	3.7555	1		+		34515	20834	20220	20221	41879	41879					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.834228515625	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.472	1	81.541	81.041	82.041	0.068993								0	0	0	0.2489	1	21215	21215		6.7232	0	1		+		34516	20834	20220	20221	41880	41880					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8341064453125	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.633	1	79.604	79.104	80.104	-0.028931								0	0	0	0.24066	1	20643	20643		9.3831	2.66	1		+		34517	20834	20220	20221	41881	41881					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8340454101562	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.147	1	80.12	79.62	80.62	-0.026825								0	0	0	0.22666	1	20801	20801		13.906	5.1606	1		+		34518	20834	20220	20221	41882	41882					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8339233398438	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.947	1	80.92	80.42	81.42	-0.026825								0	0	0	0.24066	1	21046	21046		9.3831	2.66	1		+		34519	20834	20220	20221	41883	41883					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8340454101562	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.123	1	81.096	80.596	81.596	-0.026825								0	0	0	0.24066	1	21100	21100		9.3831	2.66	1		+		34520	20834	20220	20221	41884	41884					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8344116210938	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.61	1	81.586	81.086	82.086	-0.02404								0	0	0	0.24066	1	21248	21248		9.3831	2.66	1		+		34521	20834	20220	20221	41885	41885					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8338623046875	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.242	1	83.221	82.721	83.721	-0.020584								0	0	0	0.22666	1	21754	21754		13.906	4.5229	1		+		34522	20834	20220	20221	41886	41886					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8341064453125	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.419	1	83.403	82.903	83.903	-0.016823								0	0	0	0.22666	1	21808	21808		13.906	5.1606	1		+		34523	20834	20220	20221	41887	41887					0.042092730632248276
PVERRWSRS	9	Unmodified	_PVERRWSRS_					0	0	0			REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	REV__ENST00000418273.2_1_10:88730792-88730906:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8341064453125	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.579	1	83.562	83.062	84.062	-0.016823								0	0	0	0.22666	1	21857	21857		13.906	3.1065	1		+		34524	20834	20220	20221	41888	41888					0.042092730632248276
PVETVLRVLRA	11	Unmodified	_PVETVLRVLRA_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.8883056640625	2	626.890429	1251.76631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.32	1	103.32	102.82	103.82	0								0	0	0	0.36335	1	27456	27456		5.2969	0	1				34525	5991	20221	20222	41889	41889					0.15049316139561597
PVEVYSYL	8	Unmodified	_PVEVYSYL_					0	0	0			REV__ENSG00000198753|ENST00000361971|PLXNB3	REV__ENSG00000198753|ENST00000361971|PLXNB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80010986328125	2	485.250026	968.485499	0.25782	0.00012511	-0.47806	-0.00023198	-0.22024	-0.00010687	485.2492870996675	79.754	0.43153	79.754	79.495	79.926	0					25	16	2	0	0	0	0.33245	1	20705	20705		13.508	0	1	109820	+		34526	18855	20222	20223	41890	41890					-4.395709538584924E-06
PVFAHLSIL	9	Unmodified	_PVFAHLSIL_					0	0	0		ENST00000596658.1_1_19:50433558-50434160:+|nuORF;ENST00000423777.6_1_19:50432412-50434160:+|nuORF;ENST00000597227.5_1_19:50432514-50434160:+|nuORF	ENST00000596658.1_1_19:50433558-50434160:+|nuORF	ENST00000596658.1_1_19:50433558-50434160:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2293395996094	2	498.797478	995.580402	0.33497	0.00016708	-0.52473	-0.00026173	-0.18975	-9.4648E-05	498.79720334446324	69.324	0.78825	69.39	68.928	69.717	0.066048					45	27	2	0	0	0	0.18943	1	17516	17516		23.148	0	1	430840			34527	10390	20223	20224	41891	41891					0.08243538690908281
PVFAHLSIL	9	Unmodified	_PVFAHLSIL_					0	0	0		ENST00000596658.1_1_19:50433558-50434160:+|nuORF;ENST00000423777.6_1_19:50432412-50434160:+|nuORF;ENST00000597227.5_1_19:50432514-50434160:+|nuORF	ENST00000596658.1_1_19:50433558-50434160:+|nuORF	ENST00000596658.1_1_19:50433558-50434160:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2292175292969	2	498.797478	995.580402	0.24903	0.00012421	-0.5521	-0.00027538	-0.30307	-0.00015117	498.7971707062397	69.45	0.8087	69.428	68.946	69.755	-0.022087					51	28	2	0	0	0	0.21137	1	17521	17521		24.674	1.5255	1	343450			34528	10390	20223	20224	41892	41892					0.08243538690908281
PVFDHSWFYF	10	Unmodified	_PVFDHSWFYF_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.75634765625	3	448.873113	1343.59751	-0.18634	-8.3643E-05	-1.0165	-0.0004563	-1.2029	-0.00053994	448.8726870122868	13.513	0.29789	13.414	13.276	13.573	-0.099291					22	10	3	0	0	0	0.32162	1	413	413		0.77653	0.078866	1	40433			34529	3321	20224	20225	41893	41893					-0.06054585493961895
PVFFLIVMIFH	11	Unmodified	_PVFFLIVMIFH_					0	0	0			REV__nc|ENSG00000225997|P0C604|OR4A8	REV__nc|ENSG00000225997|P0C604|OR4A8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2520446777344	3	454.926272	1361.75699	-0.051953	-2.3635E-05	1.5546	0.00070725	1.5027	0.00068361	455.26165050580573	22.983	0.14675	22.896	22.79	22.937	-0.08761					5	4	2	0	0	0	0.33326	1	3312	3312		1.4551	0.12547	1	30305	+		34530	23199	20225	20226	41894	41894					0.09057831529685245
PVFLLYLD	8	Unmodified	_PVFLLYLD_					0	0	0			REV__nc|ENSG00000166451|Q96H22-3|CENPN	REV__nc|ENSG00000166451|Q96H22-3|CENPN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.7971496582031	2	490.278586	978.54262	0.56407	0.00027655	1.0641	0.00052172	1.6282	0.00079828	490.2788203659977	84.418	0.47235	84.495	84.274	84.747	0.077095					36	18	3	0	0	0	0.34218	1	22150	22150		9.3474	0	1	206410	+		34531	23075	20226	20227	41895	41895					0.05249027705417575
PVFLRWLDE	9	Unmodified	_PVFLRWLDE_					0	0	0			REV__ENSG00000081721|ENST00000367943|DUSP12	REV__ENSG00000081721|ENST00000367943|DUSP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8165283203125	2	587.816399	1173.61824	0.36391	0.00021391	-0.55503	-0.00032626	-0.19112	-0.00011234	587.8163434380863	91.129	0.35132	91.129	91.111	91.463	0					42	25	2	0	0	0	0.34681	1	24224	24224		1.8442	0	1	602940	+		34532	13906	20227	20228	41896	41896					0.03838004885687951
PVFQNLWQNPK	11	Unmodified	_PVFQNLWQNPK_					0	0	0			REV__ENSG00000136021|ENST00000360820|SCYL2	REV__ENSG00000136021|ENST00000360820|SCYL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.16412353515625	3	457.5787	1369.71427	-0.028267	-1.2935E-05	3.6392	0.0016652	3.6109	0.0016523	457.5804907145662	26.207	0.13503	26.168	26.1	26.235	-0.038671					5	4	2	0	0	0	0.33202	1	4280	4280		5.0475	2.4163	1	56008	+		34533	15781	20228	20229	41897	41897					0.04420152725811022
PVFRTIEAK	9	Unmodified	_PVFRTIEAK_					0	0	0			REV__ENSG00000084463|ENST00000261167|WBP11	REV__ENSG00000084463|ENST00000261167|WBP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.8099975585938	2	530.811116	1059.60768	0.43605	0.00023146	2.7342	0.0014514	3.1703	0.0016828	530.8126550467383	19.979	0.66001	19.979	19.547	20.207	0					52	24	3	0	0	0	0.3208	1	2337	2337		5.7319	0.83484	1	277910	+		34534	13948	20229	20230	41898	41898					0.0802602223127451
PVFSRPPVLPL	11	Unmodified	_PVFSRPPVLPL_					0	0	0			REV__ENSG00000283439|ENST00000636696|SPEM3	REV__ENSG00000283439|ENST00000636696|SPEM3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.3563842773438	2	611.371341	1220.72813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.949	1	83.949	83.449	84.449	0								0	0	0	0.36517	1	21984	21984		4.897	0	1		+		34535	19367	20230	20231	41899	41899					0.1265943022490319
PVFSSAWNYF	10	Unmodified	_PVFSSAWNYF_					0	0	0		ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037|TRIM4	ENSG00000146833|ENST00000349062|TRIM4	ENSG00000146833|ENST00000349062|TRIM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.9034118652344	3	406.525713	1216.55531	-0.28283	-0.00011498	-0.89767	-0.00036493	-1.1805	-0.0004799	406.8595339312907	25.38	0.23158	25.324	25.134	25.365	-0.055931					10	7	2	0	0	0	0.32051	1	4031	4031		1.9064	0	1	41057			34536	4730	20231	20232	41900	41900					-0.044305609023467696
PVFSVWTIF	9	Unmodified	_PVFSVWTIF_					0	0	0			REV__ENSG00000169962|ENST00000339381|TAS1R3	REV__ENSG00000169962|ENST00000339381|TAS1R3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8161010742188	2	548.29731	1094.58007	0.55009	0.00030161	-0.17374	-9.5264E-05	0.37635	0.00020635	548.2976272129714	76.347	0.15618	76.315	76.189	76.346	-0.031487					7	5	2	0	0	0	0.23783	1	19614	19614		18.135	10.225	1	190470	+		34537	17555	20232	20233	41901	41901					0.03656118971025535
PVGGRIQLA	9	Unmodified	_PVGGRIQLA_					0	0	0		nc|ENSG00000187824|Q6QAJ8-2|TMEM220;ENSG00000187824|ENST00000341871|TMEM220	nc|ENSG00000187824|Q6QAJ8-2|TMEM220	nc|ENSG00000187824|Q6QAJ8-2|TMEM220	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2871398925781	2	455.777077	909.5396	-0.038307	-1.7459E-05	0.34785	0.00015854	0.30955	0.00014108	455.77710614192114	16.579	1.021	16.464	15.866	16.887	-0.11434					58	35	2	0	0	0	0.23783	1	1473	1473		18.135	2.2878	1	175830			34538	7713	20233	20234	41902	41902					0.08121197371281141
PVGHESATPF	10	Unmodified	_PVGHESATPF_					0	0	0			REV__ENSG00000090372|ENST00000263280|STRN4	REV__ENSG00000090372|ENST00000263280|STRN4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.850830078125	2	521.253631	1040.49271	0.6626	0.00034538	-0.84288	-0.00043935	-0.18028	-9.3972E-05	521.2535258987332	54.55	0.72218	54.614	54.218	54.941	0.063206					70	26	3	0	0	0	0.31051	1	12866	12866		7.2892	2.0586	1	741800	+		34539	14040	20234	20235	41903	41903					-0.025917069705201357
PVGKKTSDK	9	Unmodified	_PVGKKTSDK_					0	0	0		nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB	nc|ENSG00000160633|Q15424-2|SAFB	nc|ENSG00000160633|Q15424-2|SAFB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7684020996094	2	480.279649	958.544745	-0.056735	-2.7249E-05	-0.097611	-4.688E-05	-0.15435	-7.4129E-05	480.2796882120355	14.641	0.40972	14.575	14.349	14.758	-0.066068					25	14	2	0	0	0	0.27532	1	820	820		12.532	3.9383	1	173060			34540	5475	20235	20236	41904	41904					0.06381456443227762
PVGPDDSEDL	10	Unmodified	_PVGPDDSEDL_					0	0	0			REV__nc|ENSG00000110881|P78348-3|ASIC1	REV__nc|ENSG00000110881|P78348-3|ASIC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7705078125	2	522.230019	1042.44548	0.20268	0.00010585	1.4619	0.00076343	1.6645	0.00086927	522.2305322446196	16.267	0.4409	16.153	15.921	16.362	-0.11434					21	14	2	0	0	0	0.32033	1	1300	1300		3.5965	1.019	1	46885	+		34541	22938	20236	20237	41905	41905					-0.07404031032183411
PVGQRSAKS	9	Unmodified	_PVGQRSAKS_					0	0	0		ENSG00000173327|ENST00000309100|MAP3K11;nc|ENSG00000173327|Q16584-2|MAP3K11	ENSG00000173327|ENST00000309100|MAP3K11	ENSG00000173327|ENST00000309100|MAP3K11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2289123535156	2	465.261791	928.509028	-0.030957	-1.4403E-05	0.94489	0.00043962	0.91394	0.00042522	465.26075181223433	24.048	0.11885	23.976	23.905	24.024	-0.072559					5	3	2	0	0	0	0.24311	1	3649	3649		11.64	2.2929	1	20818			34542	6716	20237	20238	41906	41906					0.04191418986226836
PVGTRYTYHF	10	Unmodified	_PVGTRYTYHF_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.20947265625	3	414.208495	1239.60366	0.11785	4.8812E-05	2.7625	0.0011442	2.8803	0.001193	414.21038418970716	25.875	2.6393	25.853	25.416	28.055	-0.022238					348	93	6	0	0	0	0.33268	1	4612	4612		9.544	0.56773	1	36158000			34543	7783	20238	20239	41907	41907					-0.006560672624573272
PVGVLRILL	9	Unmodified	_PVGVLRILL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.76873779296875	2	490.33677	978.658987	0.62745	0.00030766	-0.1984	-9.7282E-05	0.42905	0.00021038	490.3368305108082	77.065	0.38542	77.034	76.852	77.237	-0.031334					21	13	2	0	0	0	0.24311	1	19880	19880		16.942	9.6531	1	193540			34544	12810	20239	20240	41908	41908					0.16880390995981998
PVHPHAEPS	9	Unmodified	_PVHPHAEPS_					0	0	0		ENST00000405546.7_1_2:242611847-242611961:+|nuORF	ENST00000405546.7_1_2:242611847-242611961:+|nuORF	ENST00000405546.7_1_2:242611847-242611961:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2564392089844	2	485.740691	969.466829	0.21477	0.00010432	1.5671	0.0007612	1.7819	0.00086553	485.7406761989165	31.082	0.16328	31.115	31.034	31.198	0.03298					6	5	2	0	0	0	0.24913	1	5761	5761		12.532	8.2023	1	58348			34545	10218	20240	20241	41909	41909					-0.019125564221440072
PVHRSSGL	8	Unmodified	_PVHRSSGL_					0	0	0		ENST00000437634.1_1_2:154277901-154278186:-|nuORF	ENST00000437634.1_1_2:154277901-154278186:-|nuORF	ENST00000437634.1_1_2:154277901-154278186:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.7643737792969	2	426.737951	851.46135	-0.052521	-2.2413E-05	1.4388	0.00061398	1.3863	0.00059157	426.7384564570926	57.959	0.41195	58.045	57.84	58.252	0.085621					24	14	2	0	0	0	0.34297	1	14077	14077		2.8892	0	1	169760			34546	10533	20241	20242	41910	41910					0.02967764786058069
PVHRSSGL	8	Unmodified	_PVHRSSGL_					0	0	0		ENST00000437634.1_1_2:154277901-154278186:-|nuORF	ENST00000437634.1_1_2:154277901-154278186:-|nuORF	ENST00000437634.1_1_2:154277901-154278186:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	426.737951	851.46135	-0.018133	-7.738E-06	1.45	0.00061877	1.4319	0.00061104	426.7384488253373	58.109	0.40509	58.109	57.953	58.358	0	0.032486	4.3389E-06	NaN	2.8892	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153100			34547	10533	20241	20242							0.02967764786058069
PVHSADSFF	9	Unmodified	_PVHSADSFF_					0	0	0		chr10:89462624-89506310|321|10.73|0.6|4.16|-|2|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|8	chr10:89462624-89506310|321|10.73|0.6|4.16|-|2|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|8	chr10:89462624-89506310|321|10.73|0.6|4.16|-|2|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.3265686035156	2	503.735074	1005.4556	0.30298	0.00015262	-1.214	-0.00061155	-0.91105	-0.00045893	503.7345038939781	62.135	0.91777	62.127	61.757	62.675	-0.0085564					43	32	2	0	0	0	0.24739	1	15357	15357		8.5933	0	1	362780			34548	121	20242	20243	41911	41911					-0.04691378516281475
PVHSKIFP	8	Unmodified	_PVHSKIFP_					0	0	0			REV__ENSG00000171811|ENST00000368586|CFAP46	REV__ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.768798828125	2	462.76872	923.522887	0.12378	5.7282E-05	-0.12183	-5.638E-05	0.0019498	9.0232E-07	462.76881562497096	35.934	0.87589	35.934	35.635	36.511	0					77	31	4	0	0	0	0.10069	1	7238	7238		60.39	2.9182	1	1412600	+		34549	17666	20243	20244	41912	41912					0.05806696485319662
PVHSKIFP	8	Unmodified	_PVHSKIFP_					0	0	0			REV__ENSG00000171811|ENST00000368586|CFAP46	REV__ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.768798828125	2	462.76872	923.522887	0.14078	6.5147E-05	-0.077052	-3.5657E-05	0.063724	2.9489E-05	462.7688052620998	35.807	0.73813	35.889	35.57	36.308	0.082355					70	26	4	0	0	0	0.072895	1	7195	7195		67.344	9.8725	1	1433100	+		34550	17666	20243	20244	41913	41913					0.05806696485319662
PVIFCFIFLF	10	Unmodified	_PVIFCFIFLF_					0	0	0			REV__ENSG00000128617|ENST00000249389|OPN1SW	REV__ENSG00000128617|ENST00000249389|OPN1SW	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.5198974609375	3	415.896201	1244.66677	0.044966	1.8701E-05	-1.7277	-0.00071853	-1.6827	-0.00069983	415.895611840427	29.142	1.3552	29.155	28.619	29.974	0.013475					77	47	3	0	0	0	0.31642	1	5182	5182		7.1017	1.699	1	156590	+		34551	15380	20244	20245	41914	41914					0.054227822012308025
PVIGPSFSPF	10	Unmodified	_PVIGPSFSPF_					0	0	0		ENST00000374754.8_1_10:35379356-35379569:-|nuORF	ENST00000374754.8_1_10:35379356-35379569:-|nuORF	ENST00000374754.8_1_10:35379356-35379569:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7567138671875	2	524.279118	1046.54368	0.48972	0.00025675	-0.67512	-0.00035395	-0.1854	-9.7201E-05	524.2787282399154	31.613	1.1218	31.655	31.399	32.521	0.042366					70	39	2	0	0	0	0.3156	1	6125	6125		10.824	1.4765	1	1317000			34552	9900	20245	20246	41915	41915					0.022272420743320254
PVIGPSFSPF	10	Unmodified	_PVIGPSFSPF_					0	0	0		ENST00000374754.8_1_10:35379356-35379569:-|nuORF	ENST00000374754.8_1_10:35379356-35379569:-|nuORF	ENST00000374754.8_1_10:35379356-35379569:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7567138671875	2	524.279118	1046.54368	0.49992	0.0002621	-0.60928	-0.00031943	-0.10936	-5.7334E-05	524.2787592293432	31.702	1.2565	31.743	31.334	32.59	0.040989					71	44	2	0	0	0	0.3156	1	6127	6127		6.7232	0	1	1374200			34553	9900	20245	20246	41916	41916					0.022272420743320254
PVISALVRTV	10	Unmodified	_PVISALVRTV_					0	0	0		nc|ENSG00000180483|Q8N690-3|DEFB119	nc|ENSG00000180483|Q8N690-3|DEFB119	nc|ENSG00000180483|Q8N690-3|DEFB119	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3148803710938	2	527.834591	1053.65463	0.24728	0.00013052	0.41215	0.00021755	0.65943	0.00034807	527.8346618298959	39.265	0.35639	39.357	39.278	39.635	0.09267					14	12	2	0	0	0	0.30586	1	8323	8323		13.906	3.8321	1	72999			34554	12867	20246	20247	41917	41917					0.12994881782401535
PVIYNSLVHV	10	Unmodified	_PVIYNSLVHV_					0	0	0		ENST00000485825.1_1_7:107215546-107218002:+|nuORF	ENST00000485825.1_1_7:107215546-107218002:+|nuORF	ENST00000485825.1_1_7:107215546-107218002:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8232421875	2	570.824224	1139.63389	-0.050965	-2.9092E-05	-2.0199	-0.001153	-2.0708	-0.0011821	570.823155811249	15.055	0.84117	14.99	14.646	15.487	-0.064414					54	28	3	0	0	0	0.32123	1	880	880		1.6526	0.17072	1	150980			34555	11098	20247	20248	41918	41918					0.06966291402750358
PVKAPPAEK	9	Unmodified	_PVKAPPAEK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.76666259765625	2	468.779285	935.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.728	1	27.728	27.228	28.228	0								0	0	0	0.19013	1	4744	4744		25.399	4.9457	1		+		34556	16705;23038	20248	20249	41919	41919					0.07366661794173979
PVKAPPAEK	9	Unmodified	_PVKAPPAEK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7666320800781	2	468.779285	935.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.713	1	27.701	27.201	28.201	-0.01156								0	0	0	0.22065	1	4737	4737		15.847	1.0089	1		+		34557	16705;23038	20248	20249	41920	41920					0.07366661794173979
PVKARILQ	8	Unmodified	_PVKARILQ_					0	0	0			REV__nc|ENSG00000164329|Q6PIY7-2|TENT2	REV__nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.2635192871094	2	462.803094	923.591636	0.28702	0.00013283	-0.14803	-6.8509E-05	0.13899	6.4325E-05	462.80295096887613	40.08	0.37543	40.173	39.994	40.369	0.09267					19	12	2	0	0	0	0.34131	1	8570	8570		12.532	2.3482	1	145330	+		34558	17150	20249	20250	41921	41921					0.12678360785037057
PVKARILQ	8	Unmodified	_PVKARILQ_					0	0	0			REV__nc|ENSG00000164329|Q6PIY7-2|TENT2	REV__nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.2633056640625	2	462.803094	923.591636	0.27772	0.00012853	-0.21255	-9.8371E-05	0.065162	3.0157E-05	462.8029410869902	40.065	0.44611	40.164	39.922	40.368	0.099407					24	15	2	0	0	0	0.3366	1	8552	8552		18.135	2.3668	1	190370	+		34559	17150	20249	20250	41922	41922					0.12678360785037057
PVKARILQ	8	Unmodified	_PVKARILQ_					0	0	0			REV__nc|ENSG00000164329|Q6PIY7-2|TENT2	REV__nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	462.803094	923.591636	0.027149	1.2564E-05	0.20501	9.4879E-05	0.23216	0.00010744	462.80307039805086	40.189	0.33778	40.189	39.996	40.334	0	0.013869	0.0003333	NaN	12.532	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140980	+		34560	17150	20249	20250							0.12678360785037057
PVKHNREH	8	Unmodified	_PVKHNREH_					0	0	0			REV__ENSG00000100852|ENST00000345122|ARHGAP5	REV__ENSG00000100852|ENST00000345122|ARHGAP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.27978515625	2	508.772857	1015.53116	0.0087533	4.4534E-06	-1.5861	-0.00080698	-1.5774	-0.00080253	509.2737919294847	14.671	0.31963	14.566	14.422	14.742	-0.10466					15	10	2	0	0	0	0.34367	1	776	776		4.3292	0	1	30796	+		34561	14233	20250	20251	41923	41923					0.02401643454652458
PVKLIARIL	9	Unmodified	_PVKLIARIL_					0	0	0			REV__ENST00000497655.1_1_1:202932056-202932895:-|nuORF	REV__ENST00000497655.1_1_1:202932056-202932895:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2791137695312	2	511.85787	1021.70119	0.43131	0.00022077	0.44046	0.00022545	0.87177	0.00044622	511.8580120250606	50.967	0.66064	51.014	50.741	51.401	0.046574					54	24	3	0	0	0	0.25417	1	11917	11917		4.756	0	1	605900	+		34562	16848	20251	20252	41924	41924					0.1912036640436554
PVKPNAEL	8	Unmodified	_PVKPNAEL_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.2376708984375	2	434.25036	866.486168	0.057166	2.4825E-05	-0.88062	-0.00038241	-0.82345	-0.00035758	434.2497910452244	26.811	0.53553	26.8	26.625	27.16	-0.01156					28	18	2	0	0	0	0.35375	1	4435	4435		24.674	6.5389	1	147240	+		34563	18519	20252	20253	41925	41925					0.04758399868762808
PVKVLHRSER	10	Unmodified	_PVKVLHRSER_					0	0	0			REV__ENST00000405021.7_1_7:22861870-22861924:-|nuORF	REV__ENST00000405021.7_1_7:22861870-22861924:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2628479003906	3	407.578923	1219.71494	0.034036	1.3872E-05	-1.31	-0.00053394	-1.276	-0.00052007	407.5787237739649	32.355	0.13453	32.409	32.306	32.441	0.054375					6	4	2	0	0	0	0.32082	1	6155	6155		3.3196	1.2336	1	37229	+		34564	20730	20253	20254	41926	41926					0.11386992165512311
PVLDTHGVI	9	Unmodified	_PVLDTHGVI_					0	0	0		COL11A2|p.D197Vfs*99|1|0.27|ENSG00000204248|chr6:33188378-33188378|T/-|frameshift_variant;nc|ENSG00000204248|P13942-9|COL11A2;nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2	COL11A2|p.D197Vfs*99|1|0.27|ENSG00000204248|chr6:33188378-33188378|T/-|frameshift_variant	COL11A2|p.D197Vfs*99|1|0.27|ENSG00000204248|chr6:33188378-33188378|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7688903808594	2	475.768917	949.523281	0.39659	0.00018869	-1.4938	-0.00071073	-1.0973	-0.00052204	475.7683718235528	63.89	0.6558	63.983	63.678	64.334	0.092884					62	23	4	0	0	0	0.23775	1	15817	15817		18.135	2.2878	1	807780			34565	194	20254	20255	41927	41927					0.04650071414528156
PVLDTHGVI	9	Unmodified	_PVLDTHGVI_					0	0	0		COL11A2|p.D197Vfs*99|1|0.27|ENSG00000204248|chr6:33188378-33188378|T/-|frameshift_variant;nc|ENSG00000204248|P13942-9|COL11A2;nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2	COL11A2|p.D197Vfs*99|1|0.27|ENSG00000204248|chr6:33188378-33188378|T/-|frameshift_variant	COL11A2|p.D197Vfs*99|1|0.27|ENSG00000204248|chr6:33188378-33188378|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7686462402344	2	475.768917	949.523281	0.46582	0.00022162	-1.2323	-0.00058628	-0.76646	-0.00036466	475.76846865061543	63.988	0.62085	63.979	63.718	64.339	-0.0095291					61	22	4	0	0	0	0.23775	1	15907	15907		18.135	1.1927	1	862700			34566	194	20254	20255	41928	41928					0.04650071414528156
PVLEYIDLV	9	Unmodified	_PVLEYIDLV_					0	0	0		ENSG00000168116|ENST00000370733|KIAA1586;ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451;nc|ENSG00000112200|Q9Y4E5-4|ZNF451	ENSG00000168116|ENST00000370733|KIAA1586;nc|ENSG00000112200|Q9Y4E5-4|ZNF451	ENSG00000168116|ENST00000370733|KIAA1586	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.8004760742188	2	530.799883	1059.58521	0.42331	0.00022469	0.85807	0.00045546	1.2814	0.00068016	530.8005004020658	90.591	0.43758	90.681	90.492	90.929	0.090675					77	34	3	0	0	0	0.29662	1	24006	24006		9.3474	0.75416	1	570100			34567	6248;12654	20255	20256	41929	41929					0.0578037804300493
PVLFIFPVI	9	Unmodified	_PVLFIFPVI_					0	0	0			REV__ENST00000296509.10_1_4:120981100-120981202:-|nuORF	REV__ENST00000296509.10_1_4:120981100-120981202:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8204956054688	2	522.828246	1043.64194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.028	1	90.028	89.528	90.528	0								0	0	0	0.25352	1	23848	23848		5.2307	0	1		+		34568	19795	20256	20257	41930	41930					0.12186470390179238
PVLFIFPVI	9	Unmodified	_PVLFIFPVI_					0	0	0			REV__ENST00000296509.10_1_4:120981100-120981202:-|nuORF	REV__ENST00000296509.10_1_4:120981100-120981202:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8206176757812	2	522.828246	1043.64194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.151	1	90.151	89.651	90.651	0								0	0	0	0.22457	1	23886	23886		14.582	0	1		+		34569	19795	20256	20257	41931	41931					0.12186470390179238
PVLFIFPVI	9	Unmodified	_PVLFIFPVI_					0	0	0			REV__ENST00000296509.10_1_4:120981100-120981202:-|nuORF	REV__ENST00000296509.10_1_4:120981100-120981202:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8206176757812	2	522.828246	1043.64194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.279	1	90.279	89.779	90.779	0								0	0	0	0.25352	1	23925	23925		5.2307	0	1		+		34570	19795	20256	20257	41932	41932					0.12186470390179238
PVLFIFPVI	9	Unmodified	_PVLFIFPVI_					0	0	0			REV__ENST00000296509.10_1_4:120981100-120981202:-|nuORF	REV__ENST00000296509.10_1_4:120981100-120981202:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8206787109375	2	522.828246	1043.64194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.004	1	90.004	89.504	90.504	0.0003891								0	0	0	0.22457	1	23828	23828		14.582	0	1		+		34571	19795	20256	20257	41933	41933					0.12186470390179238
PVLFIFPVI	9	Unmodified	_PVLFIFPVI_					0	0	0			REV__ENST00000296509.10_1_4:120981100-120981202:-|nuORF	REV__ENST00000296509.10_1_4:120981100-120981202:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8207397460938	2	522.828246	1043.64194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.159	1	90.16	89.66	90.66	0.0003891								0	0	0	0.24077	1	23874	23874		9.3474	0	1		+		34572	19795	20256	20257	41934	41934					0.12186470390179238
PVLGPADQKT	10	Unmodified	_PVLGPADQKT_					0	0	0		ALMS1|p.V2785Sfs*8|1|0.2|ENSG00000116127|chr2:73490309-73490310|-/A|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	ALMS1|p.V2785Sfs*8|1|0.2|ENSG00000116127|chr2:73490309-73490310|-/A|frameshift_variant	ALMS1|p.V2785Sfs*8|1|0.2|ENSG00000116127|chr2:73490309-73490310|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.8111572265625	2	513.284931	1024.55531	0.14733	7.5621E-05	-1.0659	-0.00054714	-0.91862	-0.00047151	513.785619968619	27.061	0.32053	27.04	26.867	27.188	-0.021412					21	10	3	0	0	0	0.31847	1	4510	4510		6.7232	0.96273	1	51528			34573	28	20257	20258	41935	41935					0.044014390976599316
PVLHGRNLL	9	Unmodified	_PVLHGRNLL_					0	0	0		ENST00000572785.1_1_15:74474685-74474796:-|nuORF;ENST00000574439.5_1_15:74472423-74490170:-|nuORF;nc|ENSG00000137868|Q9BX79-3|STRA6;ENSG00000137868|ENST00000395105|STRA6;nc|ENSG00000137868|Q9BX79-6|STRA6;nc|ENSG00000137868|Q9BX79-5|STRA6;nc|ENSG00000137868|Q9BX79-4|STRA6	ENST00000572785.1_1_15:74474685-74474796:-|nuORF	ENST00000572785.1_1_15:74474685-74474796:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8124694824219	2	509.811451	1017.60835	0.47766	0.00024352	2.0086	0.001024	2.4862	0.0012675	509.8124800231441	85.116	0.47865	85.197	84.935	85.414	0.080879					30	18	2	0	0	0	0.11517	1	22349	22349		36.044	7.5574	1	309380			34574	4090	20258	20259	41936	41936					0.10024861670990504
PVLITPAL	8	Unmodified	_PVLITPAL_					0	0	0			REV__ENST00000409291.5_1_15:44092113-44092284:+|nuORF	REV__ENST00000409291.5_1_15:44092113-44092284:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.26776123046875	2	412.268022	822.521491	-0.016475	-6.7922E-06	0.11619	4.79E-05	0.099712	4.1108E-05	412.26790370457036	71.045	0.89892	71.045	70.683	71.582	0					84	31	4	0	0	0	0.1843	1	18133	18133		45.75	0	1	3960300	+		34575	20757	20259	20260	41937	41937					0.103130623965626
PVLITPAL	8	Unmodified	_PVLITPAL_					0	0	0			REV__ENST00000409291.5_1_15:44092113-44092284:+|nuORF	REV__ENST00000409291.5_1_15:44092113-44092284:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2679138183594	2	412.268022	822.521491	0.21275	8.7711E-05	-0.073737	-3.0399E-05	0.13902	5.7311E-05	412.26782285519516	70.997	1.5871	71.058	70.69	72.277	0.060783					98	57	3	0	0	0	0.056507	1	18062	18062		75.128	4.2634	1	4036500	+		34576	20757	20259	20260	41938	41938					0.103130623965626
PVLKKMVPV	9	Unmodified	_PVLKKMVPV_					0	0	0			REV__ENSG00000161609|ENST00000447857|KASH5	REV__ENSG00000161609|ENST00000447857|KASH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.80535888671875	2	505.825181	1009.63581	-0.018632	-9.4246E-06	-1.2907	-0.00065288	-1.3094	-0.0006623	506.32528483860835	65.101	0.58585	65.19	64.905	65.491	0.088882					40	21	3	0	0	0	0.25291	1	16150	16150		5.2307	2.6532	1	239700	+		34577	16942	20260	20261	41939	41939					0.13137628887011488
PVLLTDLKI	9	Unmodified	_PVLLTDLKI_					0	0	0		ENSG00000165092|ENST00000297785|ALDH1A1	ENSG00000165092|ENST00000297785|ALDH1A1	ENSG00000165092|ENST00000297785|ALDH1A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.80535888671875	2	506.326068	1010.63758	0.44786	0.00022676	-0.96625	-0.00048924	-0.51839	-0.00026247	506.3253318526349	64.294	0.92171	64.387	64.116	65.038	0.092888					48	33	2	0	0	0	0.24913	1	16150	16150		12.532	0.89125	1	207930			34578	5922	20261	20262	41940	41940					0.13268961176606808
PVLLTDLKI	9	Unmodified	_PVLLTDLKI_					0	0	0		ENSG00000165092|ENST00000297785|ALDH1A1	ENSG00000165092|ENST00000297785|ALDH1A1	ENSG00000165092|ENST00000297785|ALDH1A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	506.326068	1010.63758	0.55098	0.00027898	-1.6232	-0.00082187	-1.0722	-0.00054289	506.3251639843603	64.45	0.64915	64.45	64.105	64.755	0	0.016511	-0.00043052	NaN	12.532	36	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219510			34579	5922	20261	20262							0.13268961176606808
PVLPDPLESF	10	Unmodified	_PVLPDPLESF_					0	0	0			REV__ENSG00000160007|ENST00000672722|ARHGAP35	REV__ENSG00000160007|ENST00000672722|ARHGAP35	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2952270507812	2	557.294965	1112.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.836	1	88.835	88.335	89.335	-0.00080872								0	0	0	0.30188	1	23471	23471		27.629	2.6378	1		+		34580	16873	20262	20263	41941	41941					0.023591900376231933
PVLPDPLESF	10	Unmodified	_PVLPDPLESF_					0	0	0			REV__ENSG00000160007|ENST00000672722|ARHGAP35	REV__ENSG00000160007|ENST00000672722|ARHGAP35	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2843017578125	2	557.294965	1112.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.895	1	88.894	88.394	89.394	-0.00080872								0	0	0	0.34454	1	23489	23489		17.113	1.2657	1		+		34581	16873	20262	20263	41942	41942					0.023591900376231933
PVLPGTQRY	9	Unmodified	_PVLPGTQRY_					0	0	0		nc|ENSG00000233101|C0HLZ6|HOXB-AS3	nc|ENSG00000233101|C0HLZ6|HOXB-AS3	nc|ENSG00000233101|C0HLZ6|HOXB-AS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.8367919921875	2	515.787641	1029.56073	0.36043	0.0001859	0.53172	0.00027426	0.89215	0.00046016	515.7879501511595	49.777	0.73138	49.777	49.434	50.166	0					60	26	3	0	0	0	0.25291	1	11441	11441		5.2307	0	1	437550			34582	12957	20263	20264	41943	41943					0.04713162680127425
PVLQHKISETL	11	Unmodified	_PVLQHKISETL_					0	0	0		nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2302551269531	3	422.246839	1263.71869	0.3409	0.00014395	-2.5205	-0.0010643	-2.1796	-0.00092033	422.2456467227963	20.405	0.49577	20.352	20.254	20.749	-0.052912					27	17	2	0	0	0	0.33296	1	2502	2502		1.2148	0	1	123550			34583	2638	20264	20265	41944	41944					0.09737617148698519
PVLRPYQREA	10	Unmodified	_PVLRPYQREA_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;nc|ENSG00000146414|Q149N8-5|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2314758300781	3	410.231412	1227.67241	-0.10233	-4.198E-05	0.63441	0.00026025	0.53207	0.00021827	410.23162669503	103.2	0.19381	103.21	103.12	103.31	0.0082626					33	28	2	0	0	0	0.32137	1	27449	27449		1.7423	0	1	4847800			34584	4711	20265	20266	41945	41945					0.0676759703726475
PVLSGPVPS	9	Unmodified	_PVLSGPVPS_					0	0	0		ENST00000540589.2_1_12:113357371-113369720:+|nuORF;ENST00000202917.9_1_12:113357194-113357533:+|nuORF	ENST00000540589.2_1_12:113357371-113369720:+|nuORF	ENST00000540589.2_1_12:113357371-113369720:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2665100097656	2	426.744911	851.475269	-0.053561	-2.2857E-05	-0.13914	-5.9377E-05	-0.1927	-8.2234E-05	426.74484858711725	51.888	0.41433	51.939	51.758	52.172	0.050575					21	14	2	0	0	0	0.23783	1	12187	12187		18.135	1.1927	1	158630			34585	8798	20266	20267	41946	41946					0.0435899749447799
PVLVLATIV	9	Unmodified	_PVLVLATIV_					0	0	0		ENST00000395505.6_1_9:95640207-95640279:-|nuORF	ENST00000395505.6_1_9:95640207-95640279:-|nuORF	ENST00000395505.6_1_9:95640207-95640279:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.2649230957031	2	462.810054	923.605554	0.14169	6.5578E-05	-0.20381	-9.4326E-05	-0.062116	-2.8748E-05	462.8099505218117	88.7	0.41606	88.7	88.527	88.943	0					28	17	2	0	0	0	0.25066	1	23432	23432		11.64	0	1	104470			34586	10092	20267	20268	41947	41947					0.14069593493479715
PVLYKYTL	8	Unmodified	_PVLYKYTL_					0	0	0		ENSG00000133103|ENST00000455146|COG6;nc|ENSG00000133103|Q9Y2V7-2|COG6	ENSG00000133103|ENST00000455146|COG6	ENSG00000133103|ENST00000455146|COG6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7916564941406	2	498.791861	995.569169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.635	1	82.635	82.135	83.135	0								0	0	0	0.3229	1	21582	21582		25.399	3.8623	1				34587	3693	20268	20269	41948	41948					0.07120716596762122
PVMELAKALL	10	Unmodified	_PVMELAKALL_					0	0	0			REV__ENST00000545065.1_1_12:123078900-123086403:+|nuORF	REV__ENST00000545065.1_1_12:123078900-123086403:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8094482421875	2	542.825378	1083.6362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.024	1	45.1	44.6	45.6	0.075047								0	0	0	0.34755	1	10019	10019		15.847	2.8047	1		+		34588	18318	20269	20270	41949	41949					0.09773003816212622
PVMFVLILL	9	Unmodified	_PVMFVLILL_					0	0	0			REV__ENST00000532574.5_1_1:145811866-145826998:-|nuORF	REV__ENST00000532574.5_1_1:145811866-145826998:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8208618164062	2	522.829932	1043.64531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.041	1	90.041	89.541	90.541	0								0	0	0	0.25352	1	23852	23852		5.2307	0	1		+		34589	21448	20270	20271	41950	41950					0.12523397172549267
PVMKKFVV	8	Unmodified	_PVMKKFVV_					0	0	0			REV__ENST00000428809.5_1_21:15516217-15516304:+|nuORF	REV__ENST00000428809.5_1_21:15516217-15516304:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2910461425781	2	474.290974	946.567395	0.19114	9.0657E-05	-0.16066	-7.6201E-05	0.03048	1.4457E-05	474.2907796338292	71.479	1.8231	71.479	70.873	72.696	0					207	65	4	0	0	0	0.45942	1	18165	18165		2.5775	2.5775	1	2291700	+		34590	20923	20271	20272	41951	41951					0.09197384307162793
PVMKKFVV	8	Unmodified	_PVMKKFVV_					0	0	0			REV__ENST00000428809.5_1_21:15516217-15516304:+|nuORF	REV__ENST00000428809.5_1_21:15516217-15516304:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.29095458984375	2	474.290974	946.567395	0.11852	5.6214E-05	-0.015725	-7.458E-06	0.1028	4.8756E-05	474.29087456331933	73.091	2.012	73.091	72.667	74.679	0					175	70	4	0	0	0	0.45942	1	18814	18814		2.5775	2.5775	1	1679500	+		34591	20923	20271	20272	41952	41952					0.09197384307162793
PVMKKFVV	8	Unmodified	_PVMKKFVV_					0	0	0			REV__ENST00000428809.5_1_21:15516217-15516304:+|nuORF	REV__ENST00000428809.5_1_21:15516217-15516304:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2909240722656	2	474.290974	946.567395	0.33668	0.00015968	-0.33808	-0.00016035	-0.0013973	-6.6274E-07	474.2907060436796	71.591	1.9657	71.563	70.854	72.82	-0.027275					229	70	4	0	0	0	0.45942	1	18142	18142		2.5775	2.5775	1	2573300	+		34592	20923	20271	20272	41953	41953					0.09197384307162793
PVMPHIPL	8	Unmodified	_PVMPHIPL_					0	0	0			REV__chr5:147872353-147901629|153|12.81|0.07|7.57|-|2|TE_info:HERVH-int,HERVH-int_dup2299,ERV1,LTR,acceptor,-,147871299,147872353|None,C5orf46|11	REV__chr5:147872353-147901629|153|12.81|0.07|7.57|-|2|TE_info:HERVH-int,HERVH-int_dup2299,ERV1,LTR,acceptor,-,147871299,147872353|None,C5orf46|11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.27777099609375	2	452.259674	902.504795	-0.00029446	-1.3317E-07	-0.9945	-0.00044977	-0.99479	-0.00044991	452.25946163853337	69.549	0.7187	69.549	69.097	69.815	0					31	25	2	0	0	0	0.34147	1	17510	17510		6.3541	0	1	78021	+		34593	13204	20272	20273	41954	41954					0.04964238238960661
PVNLTSFSL	9	Unmodified	_PVNLTSFSL_					0	0	0		ENSG00000157219|ENST00000287907|HTR5A	ENSG00000157219|ENST00000287907|HTR5A	ENSG00000157219|ENST00000287907|HTR5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.3418273925781	2	489.26875	976.522947	0.33964	0.00016617	0.25784	0.00012616	0.59748	0.00029233	489.2688393896385	65.47	0.71553	65.459	65.257	65.972	-0.011337					31	25	2	0	0	0	0.20651	1	16366	16366		20.454	1.1966	1	151450			34594	5290	20273	20274	41955	41955					0.03374651694673503
PVPANERK	8	Unmodified	_PVPANERK_					0	0	0			REV__ENST00000339733.9_2_14:23596388-23597552:-|nuORF	REV__ENST00000339733.9_2_14:23596388-23597552:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2425842285156	2	455.758884	909.503215	-0.18653	-8.5013E-05	-1.81	-0.00082493	-1.9965	-0.00090994	455.7578881734654	14.347	0.24971	14.281	14.124	14.373	-0.066068					17	8	3	0	0	0	0.34247	1	683	683		8.5933	0	1	47507	+		34595	20101	20274	20275	41956	41956					0.04484320474557535
PVPAPKAVPFT	11	Unmodified	_PVPAPKAVPFT_					0	0	0			REV__ENST00000577672.1_1_1:1656015-1656141:+|nuORF	REV__ENST00000577672.1_1_1:1656015-1656141:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3165283203125	2	562.329142	1122.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.895	1	36.988	36.488	37.488	0.093018								0	0	0	0.32418	1	7535	7535		13.906	7.1829	1		+		34596	22461	20275	20276	41957	41957					0.08731479408129417
PVPCDLNLF	9	Unmodified	_PVPCDLNLF_					0	0	0			REV__ENST00000357006.8_1_18:5290207-5290390:-|nuORF	REV__ENST00000357006.8_1_18:5290207-5290390:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7765808105469	2	509.257328	1016.5001	0.3093	0.00015751	-2.7503	-0.0014006	-2.441	-0.0012431	509.25533830858774	70.1	0.26349	70.1	69.92	70.183	0					14	9	2	0	0	0	0.24913	1	17755	17755		12.532	0.89125	1	89869	+		34597	20206	20276	20277	41958	41958					-0.007486906944791372
PVPFCEIL	8	Unmodified	_PVPFCEIL_					0	0	0			REV__ENST00000478508.1_1_2:203164671-203164698:+|nuORF	REV__ENST00000478508.1_1_2:203164671-203164698:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.25469970703125	2	459.243689	916.472826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.718	1	62.718	62.218	63.218	0								0	0	0	0.33276	1	15490	15490		22.453	0.70599	1		+		34598	21455	20277	20278	41959	41959					0.011248257651573113
PVPGKKNL	8	Unmodified	_PVPGKKNL_					0	0	0			REV__ENST00000582287.6_1_19:18545725-18546537:-|nuORF	REV__ENST00000582287.6_1_19:18545725-18546537:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.9419250488281	2	426.76872	851.522887	-0.022789	-9.7255E-06	-0.87145	-0.00037191	-0.89424	-0.00038163	426.76847609711876	38.149	1.0905	38.24	37.796	38.887	0.090881					60	39	3	0	0	0	0.33995	1	7839	7839		15.768	1.1865	1	295380	+		34599	14474	20278	20279	41960	41960					0.09118696485313649
PVPKAALL	8	Unmodified	_PVPKAALL_					0	0	0		ENSG00000122641|ENST00000242208|INHBA	ENSG00000122641|ENST00000242208|INHBA	ENSG00000122641|ENST00000242208|INHBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2641906738281	2	404.768189	807.521825	-0.35027	-0.00014178	-2.9835	-0.0012076	-3.3338	-0.0013494	404.76686886725923	106.65	0.11214	106.64	106.56	106.68	-0.0060501					26	16	2	0	0	0	0.344	1	28190	28190		2.5775	0	1	663490			34600	3055	20279	20280	41961	41961					0.11036482116412571
PVPLKAPFQ	9	Unmodified	_PVPLKAPFQ_					0	0	0			REV__ENST00000468303.5_1_1:24742805-24742964:-|nuORF	REV__ENST00000468303.5_1_1:24742805-24742964:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2728271484375	2	498.797478	995.580402	0.33195	0.00016557	-0.28432	-0.00014182	0.047627	2.3756E-05	498.79747639091323	42.317	0.29507	42.403	42.323	42.618	0.085197					14	10	2	0	0	0	0.22596	1	9179	9179		21.747	7.165	1	161910	+		34601	21321	20280	20281	41962	41962					0.08243538690885543
PVPLKAPFQ	9	Unmodified	_PVPLKAPFQ_					0	0	0			REV__ENST00000468303.5_1_1:24742805-24742964:-|nuORF	REV__ENST00000468303.5_1_1:24742805-24742964:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.797478	995.580402	0.38321	0.00019114	-1.0971	-0.00054722	-0.71388	-0.00035608	498.7972268023732	42.292	0.26756	42.383	42.26	42.527	0.091362	-0.0095845	-0.00028362	NaN	21.747	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94172	+		34602	21321	20280	20281							0.08243538690885543
PVPLTSPL	8	Unmodified	_PVPLTSPL_					0	0	0		ENST00000336219.3_1_14:105477261-105477489:-|nuORF	ENST00000336219.3_1_14:105477261-105477489:-|nuORF	ENST00000336219.3_1_14:105477261-105477489:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.5750427246094	2	412.249829	822.485105	-0.18626	-7.6787E-05	-0.36076	-0.00014873	-0.54703	-0.00022551	412.2493160714609	65.302	0.8812	65.302	64.858	65.739	0					59	31	3	0	0	0	0.33245	1	16410	16410		13.508	0	1	154590			34603	9485	20281	20282	41963	41963					0.06676185499861731
PVPLTSPL	8	Unmodified	_PVPLTSPL_					0	0	0		ENST00000336219.3_1_14:105477261-105477489:-|nuORF	ENST00000336219.3_1_14:105477261-105477489:-|nuORF	ENST00000336219.3_1_14:105477261-105477489:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	412.249829	822.485105	-0.04395	-1.8118E-05	-0.39845	-0.00016426	-0.4424	-0.00018238	412.24920833545764	65.298	0.90436	65.286	64.922	65.827	-0.011337	-0.0076469	-1.7566E-05	NaN	13.508	53	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174510			34604	9485	20281	20282							0.06676185499861731
PVPMTGLTDRM	11	Unmodified	_PVPMTGLTDRM_					0	0	0		ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	ENSG00000135220|ENST00000251566|UGT2A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.8978576660156	3	406.538748	1216.59441	0.13511	5.4929E-05	2.5813	0.0010494	2.7164	0.0011043	406.5400579925918	48.281	0.34846	48.281	48.156	48.504	0					14	11	2	0	0	0	0.32912	1	11089	11089		5.5233	1.1941	1	133870			34605	3853	20282	20283	41964	41964					-0.005219199346583991
PVPPFSPGAF	10	Unmodified	_PVPPFSPGAF_					0	0	0			REV__ENST00000601780.5_1_19:50985525-50985786:+|nuORF	REV__ENST00000601780.5_1_19:50985525-50985786:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7762451171875	2	508.26601	1014.51747	0.69947	0.00035552	-0.42344	-0.00021522	0.27604	0.0001403	508.26618261708404	54.664	0.48112	54.664	54.462	54.943	0					25	17	2	0	0	0	0.2892	1	13062	13062		21.747	2.3076	1	301050	+		34606	22637	20283	20284	41965	41965					0.010789729028601869
PVPPLPTPVT	10	Unmodified	_PVPPLPTPVT_					0	0	0			REV__ENSG00000188316|ENST00000341276|ENO4	REV__ENSG00000188316|ENST00000341276|ENO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8105163574219	2	509.302593	1016.59063	0.51266	0.0002611	0.0052709	2.6845E-06	0.51793	0.00026378	509.30247454304936	64.493	0.91457	64.493	64.185	65.1	0					54	33	2	0	0	0	0.31165	1	15966	15966		6.7232	0	1	737850	+		34607	18548	20284	20285	41966	41966					0.08300101625468415
PVPRQRRPT	9	Unmodified	_PVPRQRRPT_					0	0	0		nc|ENSG00000160963|Q96A83-2|COL26A1;ENSG00000160963|ENST00000313669|COL26A1	nc|ENSG00000160963|Q96A83-2|COL26A1	nc|ENSG00000160963|Q96A83-2|COL26A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2977294921875	2	553.830706	1105.64686	0.34789	0.00019267	-1.4103	-0.00078106	-1.0624	-0.00058839	553.8296708467038	95.873	0.32767	95.869	95.735	96.062	-0.0038147					44	27	2	0	0	0	0.25811	1	25592	25592		5.2307	0.90143	1	116390			34608	5502	20285	20286	41967	41967					0.09826167305527633
PVPRQRRPT	9	Unmodified	_PVPRQRRPT_					0	0	0		nc|ENSG00000160963|Q96A83-2|COL26A1;ENSG00000160963|ENST00000313669|COL26A1	nc|ENSG00000160963|Q96A83-2|COL26A1	nc|ENSG00000160963|Q96A83-2|COL26A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.830706	1105.64686	0.11563	6.4039E-05	-1.5636	-0.00086597	-1.448	-0.00080193	553.829783702735	95.597	0.31003	95.597	95.491	95.801	0	-0.13613	-9.6852E-05	NaN	5.2307	49	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76883			34609	5502	20285	20286							0.09826167305527633
PVPRSSSLLV	10	Unmodified	_PVPRSSSLLV_					0	0	0			REV__ENST00000591160.1_1_19:5903831-5904008:-|nuORF	REV__ENST00000591160.1_1_19:5903831-5904008:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2587890625	2	527.816399	1053.61824	0.6277	0.00033131	-0.8358	-0.00044115	-0.2081	-0.00010984	527.8160032906717	55.446	0.4328	55.517	55.371	55.804	0.070885					18	15	2	0	0	0	0.31745	1	13202	13202		1.8442	0	1	261130	+		34610	22561	20286	20287	41968	41968					0.09358004885712035
PVPSAFRLSSV	11	Unmodified	_PVPSAFRLSSV_					0	0	0			REV__ENST00000225777.7_1_17:76168296-76168503:+|nuORF	REV__ENST00000225777.7_1_17:76168296-76168503:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3250732421875	2	580.327131	1158.63971	0.16218	9.412E-05	-1.1325	-0.00065725	-0.97036	-0.00056313	580.8284645560626	18.13	0.55204	18.13	17.898	18.451	0					45	18	4	0	0	0	0.45826	1	1838	1838		3.5871	0.30575	1	149450	+		34611	19439	20287	20288	41969	41969					0.0667338991440829
PVPSNSHVF	9	Unmodified	_PVPSNSHVF_					0	0	0			REV__nc|ENSG00000204406|Q9P267-2|MBD5	REV__nc|ENSG00000204406|Q9P267-2|MBD5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.7961730957031	2	492.250892	982.48723	0.23751	0.00011691	0.33652	0.00016565	0.57402	0.00028256	492.2510335435735	41.176	0.54057	41.273	40.881	41.422	0.096622					32	19	3	0	0	0	0.24913	1	8846	8846		4.3292	2.0265	1	418760	+		34612	18941	20288	20289	41970	41970					-0.00471385762330101
PVPSRFNRRV	10	Unmodified	_PVPSRFNRRV_					0	0	0		nc|ENSG00000114302|P13861-2|PRKAR2A;ENSG00000114302|ENST00000265563|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	nc|ENSG00000114302|P13861-2|PRKAR2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.91412353515625	3	409.907151	1226.69962	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.737	1	49.737	49.237	50.237	0								0	0	0	0.37048	1	11481	11481		6.1918	0	1				34613	2553	20289	20290	41971	41971					0.09534125368304558
PVPTPVPTPI	10	Unmodified	_PVPTPVPTPI_					0	0	0			REV__ENSG00000186838|ENST00000335426|SELENOV	REV__ENSG00000186838|ENST00000335426|SELENOV	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7763671875	2	509.302593	1016.59063	0.49226	0.00025071	0.26374	0.00013433	0.756	0.00038503	509.30274328354085	87.046	0.6544	87.046	86.728	87.382	0					63	26	3	0	0	0	0.3156	1	22840	22840		10.824	0	1	255430	+		34614	18472	20290	20291	41972	41972					0.08300101625468415
PVPYVDLQV	9	Unmodified	_PVPYVDLQV_					0	0	0			REV__nc|ENSG00000081913|O60346-2|PHLPP1	REV__nc|ENSG00000081913|O60346-2|PHLPP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.3081665039062	2	515.2844	1028.55425	0.63827	0.00032889	-0.027217	-1.4025E-05	0.61105	0.00031487	515.7863670412282	58.392	0.27559	58.378	58.221	58.496	-0.014267					12	9	2	0	0	0	0.21389	1	14178	14178		25.399	11.493	1	156500	+		34615	13911	20291	20292	41973	41973					0.04111224728740126
PVQCGELTAW	10	Unmodified	_PVQCGELTAW_					0	0	0			REV__ENST00000484846.1_1_11:64623516-64624089:-|nuORF	REV__ENST00000484846.1_1_11:64623516-64624089:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2797241210938	2	552.263142	1102.51173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.999	1	23.999	23.499	24.499	0								0	0	0	0.37581	1	3617	3617		3.9444	0	1		+		34616	21536	20292	20293	41974	41974					-0.035424936711251576
PVQILVNF	8	Unmodified	_PVQILVNF_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.263916015625	2	465.276378	928.538203	0.0087332	4.0634E-06	-0.9632	-0.00044816	-0.95447	-0.00044409	465.2759329890178	51.427	0.75997	51.473	51.221	51.981	0.046574					58	27	3	0	0	0	0.42446	1	11950	11950		14.582	2.0501	1	1376800	+		34617	16423	20293	20294	41975	41975					0.07107563282522733
PVQILVNF	8	Unmodified	_PVQILVNF_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.26397705078125	2	465.276378	928.538203	0.22481	0.0001046	-1.0912	-0.00050771	-0.86639	-0.00040311	465.2759360251886	51.494	0.74441	51.503	51.22	51.964	0.0095673					67	27	4	0	0	0	0.42446	1	11953	11953		14.582	2.0501	1	1469300	+		34618	16423	20293	20294	41976	41976					0.07107563282522733
PVQIRNHF	8	Unmodified	_PVQIRNHF_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7996826171875	2	505.780151	1009.54575	0.53422	0.0002702	-4.4546	-0.002253	-3.9204	-0.0019828	505.77823585276155	84.777	0.27521	84.858	84.7	84.975	0.080879					13	10	2	0	0	0	0.34185	1	22233	22233		10.183	2.2732	1	66603			34619	8020	20294	20295	41977	41977					0.04135715602797063
PVQKKGIASP	10	Unmodified	_PVQKKGIASP_					0	0	0			REV__ENSG00000138794|ENST00000265164|CASP6	REV__ENSG00000138794|ENST00000265164|CASP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2827758789062	2	512.811116	1023.60768	0.14117	7.2396E-05	0.5716	0.00029312	0.71277	0.00036552	512.8113291525667	18.681	0.44663	18.681	18.505	18.952	0					24	15	2	0	0	0	0.32139	1	2048	2048		1.3295	0.63916	1	52092	+		34620	15958	20295	20296	41978	41978					0.09682022231277188
PVQLVTRLVLT	11	Unmodified	_PVQLVTRLVLT_					0	0	0			REV__nc|ENSG00000258806|Q8NGC8|OR11H7	REV__nc|ENSG00000258806|Q8NGC8|OR11H7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8203735351562	2	619.89518	1237.77581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.719	1	12.62	12.12	13.12	-0.099291								0	0	0	0.38126	1	212	212		1.1933	0	1		+		34621	23223	20296	20297	41979	41979					0.16643084425049892
PVQQPMGPIL	10	Unmodified	_PVQQPMGPIL_					0	0	0			REV__ENSG00000133665|ENST00000256039|DYDC2	REV__ENSG00000133665|ENST00000256039|DYDC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8186645507812	2	540.299527	1078.5845	0.65305	0.00035284	2.5537	0.0013797	3.2067	0.0017326	540.301480829917	93.791	0.11733	93.791	93.736	93.853	-0.00051117					10	7	2	0	0	0	0.31395	1	24987	24987		12.532	3.1841	1	54706	+		34622	15631	20297	20298	41980	41980					0.04835260122308682
PVQVGRIIL	9	Unmodified	_PVQVGRIIL_					0	0	0		ENST00000586287.1_1_6:41250094-41254393:-|nuORF;nc|ENSG00000124731|Q9NP99-2|TREM1;nc|ENSG00000124731|Q9NP99-3|TREM1;ENSG00000124731|ENST00000244709|TREM1	ENST00000586287.1_1_6:41250094-41254393:-|nuORF	ENST00000586287.1_1_6:41250094-41254393:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7897644042969	2	497.824027	993.633501	0.64493	0.00032106	-0.69221	-0.0003446	-0.04728	-2.3537E-05	497.82360323851236	60.493	0.62601	60.588	60.268	60.894	0.095089					33	22	2	0	0	0	0.2451	1	14781	14781		15.847	1.0089	1	484760			34623	3176	20298	20299	41981	41981					0.13642916473577316
PVQVGRIIL	9	Unmodified	_PVQVGRIIL_					0	0	0		ENST00000586287.1_1_6:41250094-41254393:-|nuORF;nc|ENSG00000124731|Q9NP99-2|TREM1;nc|ENSG00000124731|Q9NP99-3|TREM1;ENSG00000124731|ENST00000244709|TREM1	ENST00000586287.1_1_6:41250094-41254393:-|nuORF	ENST00000586287.1_1_6:41250094-41254393:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7898864746094	2	497.824027	993.633501	0.6705	0.00033379	-0.65894	-0.00032804	0.01156	5.7548E-06	497.82368276858125	60.582	0.63831	60.572	60.2	60.838	-0.0094566					36	23	2	0	0	0	0.22596	1	14812	14812		15.847	1.0089	1	599940			34624	3176	20298	20299	41982	41982					0.13642916473577316
PVRCKLITM	9	Unmodified	_PVRCKLITM_					0	0	0			REV__ENST00000025301.3_1_13:42875442-42875532:+|nuORF	REV__ENST00000025301.3_1_13:42875442-42875532:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.8052978515625	2	530.803922	1059.59329	0.12623	6.7002E-05	-2.2816	-0.0012111	-2.1554	-0.0011441	531.3049157731557	60.109	1.0747	60.109	59.533	60.607	0					88	38	4	0	0	0	0.12846	1	14701	14701		34.102	3.8776	1	1870700	+		34625	19377	20299	20300	41983	41983					0.06587910487110094
PVREPLIEL	9	Unmodified	_PVREPLIEL_					0	0	0			REV__SPIN4|p.L167Pfs*2|1|0.05|ENSG00000186767|chrX:63350319-63350320|CA/-|frameshift_variant	REV__SPIN4|p.L167Pfs*2|1|0.05|ENSG00000186767|chrX:63350319-63350320|CA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.30859375	2	533.318774	1064.623	0.251	0.00013386	1.2372	0.00065984	1.4882	0.0007937	533.3192633373435	62.167	0.57283	62.264	62.03	62.603	0.096985					36	20	2	0	0	0	0.22215	1	15301	15301		20.415	1.0526	1	411970	+		34626	18467	20300	20301	41984	41984					0.09326889028466212
PVRFLLETV	9	Unmodified	_PVRFLLETV_					0	0	0		nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L;nc|ENSG00000152061|Q5R372-2|RABGAP1L;RABGAP1L|p.L752*|1|0.15|ENSG00000152061|chr1:174811873-174811873|T/-|frameshift_variant	nc|ENSG00000152061|Q5R372-4|RABGAP1L	nc|ENSG00000152061|Q5R372-4|RABGAP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7106323242188	2	537.321317	1072.62808	0.32861	0.00017657	0.083768	4.501E-05	0.41238	0.00022158	537.3216903687306	67.052	0.44723	67.131	67.069	67.516	0.078918					20	15	2	0	0	0	0.22061	1	16853	16853		24.021	1.2843	1	89755			34627	4997	20301	20302	41985	41985					0.09467192891088416
PVRGVLLSETE	11	Unmodified	_PVRGVLLSETE_					0	0	0			REV__nc|ENSG00000102780|Q86XP1-5|DGKH	REV__nc|ENSG00000102780|Q86XP1-5|DGKH	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3343505859375	2	600.335153	1198.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.495	1	82.495	81.995	82.995	0								0	0	0	0.36137	1	21539	21539		5.7319	0	1		+		34628	14332	20302	20303	41986	41986					0.0643705136067183
PVRITESL	8	Unmodified	_PVRITESL_					0	0	0			REV__nc|ENSG00000101307|Q5TFQ8|SIRPB1	REV__nc|ENSG00000101307|Q5TFQ8|SIRPB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2768249511719	2	457.768917	913.523281	0.22786	0.00010431	-0.31256	-0.00014308	-0.084704	-3.8775E-05	457.7687414461564	42.117	0.58164	42.202	41.983	42.565	0.085197					32	20	2	0	0	0	0.30503	1	9166	9166		23.148	0	1	487100	+		34629	18793	20303	20304	41987	41987					0.06306071414530834
PVRKHFIF	8	Unmodified	_PVRKHFIF_					0	0	0		ENST00000308234.11_1_5:98129683-98129833:+|nuORF	ENST00000308234.11_1_5:98129683-98129833:+|nuORF	ENST00000308234.11_1_5:98129683-98129833:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.82080078125	2	522.311087	1042.60762	0.5394	0.00028174	2.6772	0.0013983	3.2166	0.0016801	522.3144783412223	89.995	0.05471	89.995	89.977	90.032	0.00039673					5	4	2	0	0	0	0.34147	1	23834	23834		11.114	5.3826	1	29519			34630	9286	20304	20305	41988	41988					0.0880206702192936
PVRLVAVVI	9	Unmodified	_PVRLVAVVI_					0	0	0			REV__ENSG00000204694|ENST00000377149|OR11A1	REV__ENSG00000204694|ENST00000377149|OR11A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.771240234375	2	483.328945	964.643337	0.079021	3.8193E-05	-0.2131	-0.000103	-0.13408	-6.4806E-05	483.32874970027666	67.029	0.26033	67.014	66.951	67.211	-0.015366					11	8	2	0	0	0	0.23783	1	16835	16835		7.9102	0	1	52601	+		34631	18959	20305	20306	41989	41989					0.1596010447893832
PVRPPASAA	9	Unmodified	_PVRPPASAA_					0	0	0		ENST00000528047.5_1_8:145734706-145736158:+|nuORF;ENST00000301327.4_1_8:145734706-145735743:+|nuORF	ENST00000528047.5_1_8:145734706-145736158:+|nuORF	ENST00000528047.5_1_8:145734706-145736158:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.5946044921875	2	433.248152	864.481751	-0.17516	-7.5888E-05	-0.19015	-8.2381E-05	-0.36531	-0.00015827	433.24799331656794	25.119	1.0769	25.063	24.376	25.453	-0.055931					69	37	2	0	0	0	0.24289	1	3945	3945		18.146	3.3081	1	319670			34632	11579	20306	20307	41990	41990					0.04408935445837869
PVRPPASAA	9	Unmodified	_PVRPPASAA_					0	0	0		ENST00000528047.5_1_8:145734706-145736158:+|nuORF;ENST00000301327.4_1_8:145734706-145735743:+|nuORF	ENST00000528047.5_1_8:145734706-145736158:+|nuORF	ENST00000528047.5_1_8:145734706-145736158:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	433.248152	864.481751	-0.15084	-6.5351E-05	-0.14621	-6.3345E-05	-0.29705	-0.0001287	433.24797259462065	25.031	1.1372	25.031	24.367	25.504	0	-0.02394	-0.00012614	NaN	18.146	80	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296850			34633	11579	20306	20307							0.04408935445837869
PVRPRGPGRP	10	Unmodified	_PVRPRGPGRP_					0	0	0		ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4	ENSG00000182450|ENST00000422670|KCNK4	ENSG00000182450|ENST00000422670|KCNK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3268432617188	2	544.825424	1087.63629	0.61877	0.00033712	-0.77593	-0.00042275	-0.15716	-8.5624E-05	544.8246270997366	88.086	1.0894	88.086	87.794	88.883	0					136	53	3	0	0	0	0.38515	1	23383	23383		6.2058	0.44535	1	1184100			34634	7292	20307	20308	41991	41991					0.09598184651076735
PVRRVRVV	8	Unmodified	_PVRRVRVV_					0	0	0		nc|ENSG00000168807|Q13425-2|SNTB2;ENSG00000168807|ENST00000336278|SNTB2	nc|ENSG00000168807|Q13425-2|SNTB2	nc|ENSG00000168807|Q13425-2|SNTB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.26690673828125	2	490.827435	979.640317	0.275	0.00013498	0.14881	7.3042E-05	0.42381	0.00020802	490.8273998836245	26.913	0.36016	26.891	26.709	27.069	-0.02141					18	12	2	0	0	0	0.3439	1	4445	4445		0	0	1	32642			34635	6302	20308	20309	41992	41992					0.14968274144803217
PVRSRRRRQ	9	Unmodified	_PVRSRRRRQ_					0	0	0			REV__ENST00000458412.1_2_15:44092902-44093782:+|nuORF	REV__ENST00000458412.1_2_15:44092902-44093782:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.8726196289062	2	605.871228	1209.7279	0.55556	0.0003366	0.40898	0.00024779	0.96454	0.00058439	605.8720242661716	90.079	1.2483	90.17	89.604	90.852	0.090675					263	98	4	0	0	0	0.25989	3	23812	23812;23854;23898		14.838	14.838	1	1231200	+		34636	21188	20309	20310	41993;41994;41995	41993					0.13142868068257485
PVRSRRRRQ	9	Unmodified	_PVRSRRRRQ_					0	0	0			REV__ENST00000458412.1_2_15:44092902-44093782:+|nuORF	REV__ENST00000458412.1_2_15:44092902-44093782:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.8721923828125	2	605.871228	1209.7279	0.45358	0.00027481	0.29583	0.00017923	0.7494	0.00045404	605.8720821264902	90.195	1.6346	90.196	89.133	90.767	0.0003891					330	121	4	0	0	0	0.25989	3	23881	23841;23881;23924		14.838	14.838	1	1018300	+		34637	21188	20309	20310	41996;41997;41998	41997					0.13142868068257485
PVRSRRRRQ	9	Unmodified	_PVRSRRRRQ_					0	0	0			REV__ENST00000458412.1_2_15:44092902-44093782:+|nuORF	REV__ENST00000458412.1_2_15:44092902-44093782:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	605.871228	1209.7279	0.5303	0.00032129	1.0767	0.00065236	1.607	0.00097366	605.8720351543739	90.209	0.93443	90.209	89.813	90.747	0	0.017601	0.00019874	NaN	14.838	187	75	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	668890	+		34638	21188	20309	20310							0.13142868068257485
PVRVTSSVQ	9	Unmodified	_PVRVTSSVQ_					0	0	0		ENSG00000186474|ENST00000684732|KLK12;nc|ENSG00000186474|Q9UKR0-2|KLK12	ENSG00000186474|ENST00000684732|KLK12	ENSG00000186474|ENST00000684732|KLK12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7703552246094	2	486.777274	971.539994	-0.04819	-2.3458E-05	0.2195	0.00010685	0.17131	8.3389E-05	486.77733142391247	27.653	0.68579	27.632	27.382	28.067	-0.02141					57	23	3	0	0	0	0.31038	1	4815	4815		7.2892	0.56607	1	745470			34639	7622	20310	20311	41999	41999					0.05308572300475589
PVRYPPKDPR	10	Unmodified	_PVRYPPKDPR_					0	0	0		ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.844970703125	2	612.846022	1223.67749	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.46	1	107.47	106.97	107.97	0.0067062								0	0	0	0.38126	1	28355	28355		1.6526	0	1				34640	7202	20311	20312	42000	42000					0.07459900899880267
PVSALYRAP	9	Unmodified	_PVSALYRAP_					0	0	0			REV__nc|ENSG00000155719|Q7RTW8-4|OTOA	REV__nc|ENSG00000155719|Q7RTW8-4|OTOA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7955322265625	2	487.276909	972.539266	-0.1009	-4.9168E-05	-4.1288	-0.0020119	-4.2297	-0.0020611	487.27487557560494	13.9	0.3899	13.795	13.633	14.023	-0.10466					24	13	3	0	0	0	0.25066	1	632	632		11.64	0	1	61962	+		34641	16707	20312	20313	42001	42001					0.0518977765142381
PVSCYLPPLS	10	Unmodified	_PVSCYLPPLS_					0	0	0		nc|ENSG00000174325|Q969H9|DIRC1	nc|ENSG00000174325|Q969H9|DIRC1	nc|ENSG00000174325|Q969H9|DIRC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.739013671875	2	538.27826	1074.54197	0.55536	0.00029894	-1.0799	-0.00058127	-0.52452	-0.00028234	538.2773801033933	21.506	0.52691	21.405	21.13	21.657	-0.10034					27	18	2	0	0	0	0.32033	1	2903	2903		3.5965	0.31518	1	48057			34642	12843	20313	20314	42002	42002					0.00767864994077172
PVSCYLPPLS	10	Unmodified	_PVSCYLPPLS_					0	0	0		nc|ENSG00000174325|Q969H9|DIRC1	nc|ENSG00000174325|Q969H9|DIRC1	nc|ENSG00000174325|Q969H9|DIRC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	538.27826	1074.54197	0.52943	0.00028498	-0.33464	-0.00018013	0.19479	0.00010485	538.2775731002765	21.442	0.34518	21.442	21.282	21.627	0	0.018043	0.00050385	NaN	3.5965	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29587			34643	12843	20313	20314							0.00767864994077172
PVSEPGLMR	9	Unmodified	_PVSEPGLMR_					0	0	0			REV__ENST00000548845.5_1_12:53693515-53693821:+|nuORF	REV__ENST00000548845.5_1_12:53693515-53693821:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.6739807128906	2	493.260402	984.506251	0.32383	0.00015973	-0.72976	-0.00035996	-0.40593	-0.00020023	493.26009100340013	17.587	0.84041	17.587	17.318	18.158	0					57	28	4	0	0	0	0.25066	1	1667	1667		11.64	3.7301	1	161610	+		34644	15998	20314	20315	42003	42003					0.013378275370769188
PVSEPGLMR	9	Unmodified	_PVSEPGLMR_					0	0	0			REV__ENST00000548845.5_1_12:53693515-53693821:+|nuORF	REV__ENST00000548845.5_1_12:53693515-53693821:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.6739807128906	2	493.260402	984.506251	0.18967	9.3556E-05	-1.0451	-0.00051549	-0.8554	-0.00042193	493.26008066742526	17.763	0.62557	17.645	17.386	18.012	-0.11739					44	21	3	0	0	0	0.24913	1	1682	1682		12.532	3.9383	1	199830	+		34645	15998	20314	20315	42004	42004					0.013378275370769188
PVSEPGLMR	9	Unmodified	_PVSEPGLMR_					0	0	0			REV__ENST00000548845.5_1_12:53693515-53693821:+|nuORF	REV__ENST00000548845.5_1_12:53693515-53693821:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.259765625	2	493.260402	984.506251	0.22816	0.00011254	-1.2639	-0.00062343	-1.0357	-0.00051089	493.26000118892136	17.777	0.84069	17.717	17.384	18.225	-0.060431					63	29	3	0	0	0	0.31038	1	1777	1777		7.2892	1.0834	1	180960	+		34646	15998	20314	20315	42005	42005					0.013378275370769188
PVSFSLVSLF	10	Unmodified	_PVSFSLVSLF_					0	0	0		ENST00000599417.1_1_19:39888611-39888992:+|nuORF	ENST00000599417.1_1_19:39888611-39888992:+|nuORF	ENST00000599417.1_1_19:39888611-39888992:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8161010742188	2	548.307875	1094.6012	0.50325	0.00027594	-2.1498	-0.0011788	-1.6466	-0.00090283	548.3065749707449	76.18	0.22372	76.149	75.992	76.216	-0.031487					10	7	2	0	0	0	0.31051	1	19564	19564		16.942	1.0951	1	212930			34647	12240	20315	20316	42006	42006					0.05768084279884533
PVSGCGCVCGC	11	Unmodified	_PVSGCGCVCGC_					0	0	0			REV__ENST00000592811.5_1_19:45973189-45973720:+|nuORF	REV__ENST00000592811.5_1_19:45973189-45973720:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.6740417480469	2	492.673933	983.333314	0.33097	0.00016306	-1.847	-0.00090995	-1.516	-0.00074689	492.67378914437955	17.255	2.1305	17.255	15.947	18.077	0					220	73	4	0	0	0	0.43831	1	1575	1575		6.2058	0.44535	1	701270	+		34648	22576	20316	20317	42007	42007					-0.15901946177677928
PVSGCGCVCGC	11	Unmodified	_PVSGCGCVCGC_					0	0	0			REV__ENST00000592811.5_1_19:45973189-45973720:+|nuORF	REV__ENST00000592811.5_1_19:45973189-45973720:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.6739196777344	2	492.673933	983.333314	0.19422	9.5689E-05	-2.0885	-0.001029	-1.8943	-0.00093328	492.6737972270293	18.607	2.0629	18.49	18.089	20.152	-0.11739					188	71	5	0	0	0	0.35522	1	2028	2028		17.113	3.605	1	1591400	+		34649	22576	20316	20317	42008	42008					-0.15901946177677928
PVSGCGCVCGC	11	Unmodified	_PVSGCGCVCGC_					0	0	0			REV__ENST00000592811.5_1_19:45973189-45973720:+|nuORF	REV__ENST00000592811.5_1_19:45973189-45973720:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.6739196777344	2	492.673933	983.333314	0.018577	9.1526E-06	-1.6848	-0.00083005	-1.6662	-0.0008209	492.6738891340528	18.597	1.8589	18.539	18.145	20.003	-0.058174					178	65	4	0	0	0	0.35522	1	1985	1985		17.113	3.605	1	1692300	+		34650	22576	20316	20317	42009	42009					-0.15901946177677928
PVSIIINL	8	Unmodified	_PVSIIINL_					0	0	0			REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.2746887207031	2	434.778754	867.542954	0.15748	6.8469E-05	-0.69594	-0.00030258	-0.53846	-0.00023411	434.7786905010265	79.219	0.72457	79.191	78.845	79.57	-0.028931					57	30	2	0	0	0	0.31617	1	20536	20536		26.884	0	1	260910	+		34651	13805	20317	20318	42010	42010					0.10388447425270897
PVSIKRAI	8	Unmodified	_PVSIKRAI_					0	0	0			REV__ENST00000503353.1_1_4:113718694-113718925:-|nuORF	REV__ENST00000503353.1_1_4:113718694-113718925:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7684020996094	2	442.28982	882.565087	0.12815	5.668E-05	-1.0824	-0.00047874	-0.95426	-0.00042206	442.28928631504806	40.713	0.24596	40.812	40.666	40.912	0.099407					11	8	2	0	0	0	0.34046	1	8722	8722		9.3474	3.587	1	90739	+		34652	21724	20318	20319	42011	42011					0.11910671893701874
PVSIRQER	8	Unmodified	_PVSIRQER_					0	0	0			REV__nc|ENSG00000166317|Q9H987-2|SYNPO2L	REV__nc|ENSG00000166317|Q9H987-2|SYNPO2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.6740417480469	2	492.78289	983.551228	0.31756	0.00015649	-0.30527	-0.00015043	0.012296	6.0593E-06	492.7827932721618	17.522	1.0367	17.522	17.151	18.188	0					66	35	2	0	0	0	0.34092	1	1575	1575		13.508	1.8676	1	219510	+		34653	17307	20319	20320	42012	42012					0.05879394394617066
PVSIRQER	8	Unmodified	_PVSIRQER_					0	0	0			REV__nc|ENSG00000166317|Q9H987-2|SYNPO2L	REV__nc|ENSG00000166317|Q9H987-2|SYNPO2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.6739807128906	2	492.78289	983.551228	0.1793	8.8355E-05	0.090855	4.4772E-05	0.27015	0.00013313	492.7828848125498	17.734	1.073	17.616	17.111	18.184	-0.11739					65	37	2	0	0	0	0.33245	1	1682	1682		19.439	2.4967	1	241660	+		34654	17307	20319	20320	42013	42013					0.05879394394617066
PVSLSTSRH	9	Unmodified	_PVSLSTSRH_					0	0	0		ENST00000244711.3_1_6:42980015-42980195:-|nuORF	ENST00000244711.3_1_6:42980015-42980195:-|nuORF	ENST00000244711.3_1_6:42980015-42980195:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.6739807128906	2	492.267073	982.519593	0.1702	8.3785E-05	-0.23528	-0.00011582	-0.065075	-3.2034E-05	492.2668196477312	17.741	0.51719	17.623	17.323	17.84	-0.11739					28	17	2	0	0	0	0.25066	1	1682	1682		11.64	3.047	1	74250			34655	8895	20320	20321	42014	42014					0.02763401640675056
PVSPEPSL	8	Unmodified	_PVSPEPSL_					0	0	0		TACC2|p.Q783Pfs*45|1|0.34|ENSG00000138162|chr10:122084840-122084841|-/C|frameshift_variant;TACC2|p.L823Yfs*105|1|0.29|ENSG00000138162|chr10:122084964-122084964|C/-|frameshift_variant;nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2	TACC2|p.Q783Pfs*45|1|0.34|ENSG00000138162|chr10:122084840-122084841|-/C|frameshift_variant	TACC2|p.Q783Pfs*45|1|0.34|ENSG00000138162|chr10:122084840-122084841|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.76080322265625	2	413.221268	824.427984	0.43586	0.00018011	-0.19541	-8.0749E-05	0.24044	9.9356E-05	413.22109238262067	36.988	1.3269	37.081	36.567	37.894	0.093014					96	48	3	0	0	0	0.33995	1	7713	7713		5.7604	0	1	341970			34656	4125	20321	20322	42015	42015					0.008747182234742468
PVSPRAGSLL	10	Unmodified	_PVSPRAGSLL_					0	0	0			REV__ENST00000397420.7_1_11:838256-838586:+|nuORF	REV__ENST00000397420.7_1_11:838256-838586:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2872314453125	2	498.795466	995.57638	0.25049	0.00012494	-0.43955	-0.00021924	-0.18906	-9.4301E-05	498.79518084370085	41.422	0.37188	41.512	41.215	41.587	0.090248					21	13	2	0	0	0	0.31143	1	8936	8936		17.113	4.5813	1	615390	+		34657	20673	20322	20323	42016	42016					0.07841449197189831
PVSPRLRQIY	10	Unmodified	_PVSPRLRQIY_					0	0	0		ENST00000564208.5_1_16:84212549-84215086:-|nuORF;ENST00000544090.5_1_16:84213937-84215086:-|nuORF;ENST00000564774.5_1_16:84214522-84215086:-|nuORF	ENST00000564208.5_1_16:84212549-84215086:-|nuORF	ENST00000564208.5_1_16:84212549-84215086:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2432861328125	3	410.24354	1227.70879	-0.0068587	-2.8137E-06	0.099	4.0614E-05	0.092141	3.78E-05	410.2435344654244	33.194	0.49949	33.249	32.903	33.403	0.054371					33	17	2	0	0	0	0.31651	1	6375	6375		11.518	2.7661	1	954570			34658	11946	20323	20324	42017	42017					0.10404473933976988
PVSPVQPRQ	9	Unmodified	_PVSPVQPRQ_					0	0	0			REV__nc|ENSG00000172046|O94966-4|USP19	REV__nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.29779052734375	2	504.285266	1006.55598	0.21957	0.00011073	2.7358	0.0013796	2.9554	0.0014904	504.2867148703453	17.702	0.84405	17.642	17.298	18.142	-0.060429					42	29	2	0	0	0	0.29638	1	1666	1666		9.3831	0	1	42020	+		34659	17688	20324	20325	42018	42018					0.0529627853737793
PVSQTQVSY	9	Unmodified	_PVSQTQVSY_					0	0	0		nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1;QSER1|p.S508Hfs*30|1|0.17|ENSG00000060749|chr11:32933166-32933166|A/-|frameshift_variant;QSER1|p.L1093Tfs*33|1|0.07|ENSG00000060749|chr11:32934920-32934921|-/AACTCTT|frameshift_variant	nc|ENSG00000060749|Q2KHR3|QSER1	nc|ENSG00000060749|Q2KHR3|QSER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.29803466796875	2	504.753464	1007.49238	0.25243	0.00012742	1.2055	0.00060846	1.4579	0.00073588	504.75410378823824	19.947	0.53014	19.947	19.627	20.157	0					38	19	3	0	0	0	0.26188	1	2311	2311		1.6526	0.17072	1	144440			34660	753	20325	20326	42019	42019					-0.011071266903741162
PVSSSYYYCC	10	Unmodified	_PVSSSYYYCC_					0	0	0		ENST00000445193.7_2_3:58305088-58305178:+|nuORF	ENST00000445193.7_2_3:58305088-58305178:+|nuORF	ENST00000445193.7_2_3:58305088-58305178:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.2254028320312	2	586.225368	1170.43618	0.34466	0.00020205	-0.6204	-0.00036369	-0.27574	-0.00016164	586.2249629827406	67.899	0.57879	67.899	67.623	68.202	0					56	20	4	0	0	0	0.33268	1	17081	17081		15.847	0	1	693720			34661	10580	20326	20327	42020	42020					-0.14221838913704232
PVSSSYYYCC	10	Unmodified	_PVSSSYYYCC_					0	0	0		ENST00000445193.7_2_3:58305088-58305178:+|nuORF	ENST00000445193.7_2_3:58305088-58305178:+|nuORF	ENST00000445193.7_2_3:58305088-58305178:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.2252197265625	2	586.225368	1170.43618	0.42884	0.0002514	-0.49841	-0.00029218	-0.069574	-4.0786E-05	586.2250272107282	67.719	0.73062	67.798	67.546	68.277	0.078041					54	25	3	0	0	0	0.33268	1	17019	17019		15.847	1.0089	1	715420			34662	10580	20326	20327	42021	42021					-0.14221838913704232
PVSSSYYYCC	10	Unmodified	_PVSSSYYYCC_					0	0	0		ENST00000445193.7_2_3:58305088-58305178:+|nuORF	ENST00000445193.7_2_3:58305088-58305178:+|nuORF	ENST00000445193.7_2_3:58305088-58305178:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.2252807617188	2	586.225368	1170.43618	0.33472	0.00019622	-0.64165	-0.00037615	-0.30693	-0.00017993	586.2249451364328	67.946	0.66851	67.93	67.618	68.287	-0.016296					54	23	3	0	0	0	0.33268	1	17057	17057		15.847	3.6065	1	711220			34663	10580	20326	20327	42022	42022					-0.14221838913704232
PVSSSYYYCC	10	Unmodified	_PVSSSYYYCC_					0	0	0		ENST00000445193.7_2_3:58305088-58305178:+|nuORF	ENST00000445193.7_2_3:58305088-58305178:+|nuORF	ENST00000445193.7_2_3:58305088-58305178:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	586.225368	1170.43618	0.34466	0.00020205	-0.6204	-0.00036369	-0.27574	-0.00016164	586.2249629827406	67.899	0.57879	67.899	67.623	68.202	0	0.023323	-3.884E-05	NaN	15.847	56	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	693720			34664	10580	20326	20327							-0.14221838913704232
PVSSSYYYCC	10	Unmodified	_PVSSSYYYCC_					0	0	0		ENST00000445193.7_2_3:58305088-58305178:+|nuORF	ENST00000445193.7_2_3:58305088-58305178:+|nuORF	ENST00000445193.7_2_3:58305088-58305178:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	586.225368	1170.43618	0.42884	0.0002514	-0.49841	-0.00029218	-0.069574	-4.0786E-05	586.2250272107282	67.719	0.73062	67.798	67.546	68.277	0.078041	-0.077754	0.00010418	NaN	15.847	54	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	715420			34665	10580	20326	20327							-0.14221838913704232
PVSTKVIDDI	10	Unmodified	_PVSTKVIDDI_					0	0	0			REV__ENSG00000198780|ENST00000687041|FAM169A	REV__ENSG00000198780|ENST00000687041|FAM169A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.777099609375	2	543.805697	1085.59684	0.18579	0.00010103	1.3886	0.00075513	1.5744	0.00085616	544.3083700833029	13.104	0.39771	13.036	12.905	13.302	-0.067495					26	11	3	0	0	0	0.32139	1	309	309		1.3295	0	1	67695	+		34666	18859	20327	20328	42023	42023					0.05746575066336845
PVSVPVTWLP	10	Unmodified	_PVSVPVTWLP_					0	0	0			REV__ENSG00000174990|ENST00000649794|CA5A	REV__ENSG00000174990|ENST00000649794|CA5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.81591796875	2	547.815867	1093.61718	0.23012	0.00012606	0.2319	0.00012704	0.46202	0.0002531	547.8158887786395	76.124	0.79425	76.124	75.794	76.588	0					71	28	3	0	0	0	0.33268	2	19576	19576;19638		15.847	4.2069	1	714190	+		34667	17866	20328	20329	42024;42025	42024					0.07411790516812289
PVSVPVTWLP	10	Unmodified	_PVSVPVTWLP_					0	0	0			REV__ENSG00000174990|ENST00000649794|CA5A	REV__ENSG00000174990|ENST00000649794|CA5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8161010742188	2	547.815867	1093.61718	0.52583	0.00028806	-0.12155	-6.6588E-05	0.40428	0.00022147	547.815709007119	76.087	0.85119	76.055	75.803	76.654	-0.031479					70	30	3	0	0	0	0.33268	2	19564	19564;19614		15.847	1.0089	1	709940	+		34668	17866	20328	20329	42026;42027	42026					0.07411790516812289
PVTDDEFSF	9	Unmodified	_PVTDDEFSF_					0	0	0			REV__ENSG00000148700|ENST00000356080|ADD3	REV__ENSG00000148700|ENST00000356080|ADD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3040771484375	2	528.729655	1055.44476	0.31909	0.00016871	0.98588	0.00052126	1.305	0.00068998	528.7302400726509	40.995	0.42957	40.995	40.796	41.225	0					23	15	2	0	0	0	0.24739	1	8760	8760		2.0598	0	1	199430	+		34669	16431	20329	20330	42028	42028					-0.08074825681228504
PVTEESDDK	9	Unmodified	_PVTEESDDK_					0	0	0			REV__nc|ENSG00000075340|P35612-5|ADD2	REV__nc|ENSG00000075340|P35612-5|ADD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8004150390625	2	510.230019	1018.44548	0.38654	0.00019722	-0.56589	-0.00028873	-0.17935	-9.151E-05	510.23013621261305	68.849	0.2175	68.921	68.854	69.072	0.071945					11	7	3	0	0	0	0.23783	1	17398	17398		7.9102	0	1	62208	+		34670	13810	20330	20331	42029	42029					-0.06300031032185416
PVTPLVPKSD	10	Unmodified	_PVTPLVPKSD_					0	0	0			REV__nc|ENSG00000256463|Q9BXA9-3|SALL3	REV__nc|ENSG00000256463|Q9BXA9-3|SALL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.8167114257812	2	526.802957	1051.59136	0.47252	0.00024892	1.079	0.00056841	1.5515	0.00081733	527.304502076404	57.635	0.81653	57.721	57.372	58.189	0.085621					72	29	3	0	0	0	0.30958	1	13990	13990		19.257	1.1106	1	994960	+		34671	19251	20331	20332	42030	42030					0.06762896274517516
PVTSKNAIR	9	Unmodified	_PVTSKNAIR_					0	0	0		ENSG00000146809|ENST00000451215|ASB15	ENSG00000146809|ENST00000451215|ASB15	ENSG00000146809|ENST00000451215|ASB15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.6739196777344	2	493.293091	984.571629	0.25206	0.00012434	0.22256	0.00010979	0.47462	0.00023413	493.29312130427144	19.347	0.87276	19.231	18.615	19.488	-0.11592					54	30	2	0	0	0	0.25622	1	2028	2028		3.9444	0.3479	1	131660			34672	4728	20332	20333	42031	42031					0.07872565054412917
PVVEDFIKI	9	Unmodified	_PVVEDFIKI_					0	0	0		ENSG00000166788|ENST00000524803|SAAL1	ENSG00000166788|ENST00000524803|SAAL1	ENSG00000166788|ENST00000524803|SAAL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2952270507812	2	530.307875	1058.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.333	1	59.319	58.819	59.819	-0.014267								0	0	0	0.22065	1	14434	14434		15.847	2.3393	1				34673	6112	20333	20334	42032	42032					0.07424084279887211
PVVGRARG	8	Unmodified	_PVVGRARG_					0	0	0		ENST00000261249.6_1_14:61447740-61448055:-|nuORF	ENST00000261249.6_1_14:61447740-61448055:-|nuORF	ENST00000261249.6_1_14:61447740-61448055:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.7277526855469	2	406.248486	810.48242	0.35143	0.00014277	-0.26512	-0.0001077	0.086311	3.5064E-05	406.2483538000891	78.153	1.7561	78.153	77.632	79.388	0					193	68	5	0	0	0	0.34337	1	20500	20500		5.2307	0	1	18088000			34674	8962	20334	20335	42033	42033					0.06959774885558545
PVVGRARG	8	Unmodified	_PVVGRARG_					0	0	0		ENST00000261249.6_1_14:61447740-61448055:-|nuORF	ENST00000261249.6_1_14:61447740-61448055:-|nuORF	ENST00000261249.6_1_14:61447740-61448055:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.7278747558594	2	406.248486	810.48242	0.24305	9.8738E-05	-0.1951	-7.9259E-05	0.04795	1.948E-05	406.24840902836905	78.097	1.8115	78.156	77.626	79.437	0.058151					195	72	4	0	0	0	0.34408	1	20481	20481		2.3027	0	1	16930000			34675	8962	20334	20335	42034	42034					0.06959774885558545
PVVGRARG	8	Unmodified	_PVVGRARG_					0	0	0		ENST00000261249.6_1_14:61447740-61448055:-|nuORF	ENST00000261249.6_1_14:61447740-61448055:-|nuORF	ENST00000261249.6_1_14:61447740-61448055:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	406.248486	810.48242	0.47481	0.00019289	-0.46981	-0.00019086	0.0049924	2.0281E-06	406.2482798651336	78.172	1.6783	78.142	77.625	79.303	-0.030434	-0.0084954	-9.7494E-05	NaN	5.2307	188	65	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16770000			34676	8962	20334	20335							0.06959774885558545
PVVGWDVTV	9	Unmodified	_PVVGWDVTV_					0	0	0			REV__ENST00000541212.5_1_12:122326677-122326887:+|nuORF	REV__ENST00000541212.5_1_12:122326677-122326887:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.27459716796875	2	486.263468	970.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.458	1	30.458	29.958	30.958	0								0	0	0	0.19804	1	5576	5576		23.148	6.2061	1		+		34677	22125	20335	20336	42035	42035					0.02594669040252029
PVVIHGHTV	9	Unmodified	_PVVIHGHTV_					0	0	0		ENSG00000144120|ENST00000272521|TMEM177	ENSG00000144120|ENST00000272521|TMEM177	ENSG00000144120|ENST00000272521|TMEM177	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.77716064453125	2	479.777077	957.5396	0.28268	0.00013562	0.26599	0.00012762	0.54867	0.00026324	479.7770473999475	36.278	0.77457	36.278	36.012	36.787	0					57	27	3	0	0	0	0.11517	2	7341	7341;7397		36.044	5.4077	1	839640			34678	4566	20336	20337	42036;42037	42036					0.059131973712851504
PVVIHGHTV	9	Unmodified	_PVVIHGHTV_					0	0	0		ENSG00000144120|ENST00000272521|TMEM177	ENSG00000144120|ENST00000272521|TMEM177	ENSG00000144120|ENST00000272521|TMEM177	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.77703857421875	2	479.777077	957.5396	0.39992	0.00019187	0.37136	0.00017817	0.77128	0.00037004	479.77702707741884	36.212	1.209	36.294	35.682	36.891	0.082355					76	43	3	0	0	0	0.072844	1	7295	7295		44.407	10.305	1	732370			34679	4566	20336	20337	42038	42038					0.059131973712851504
PVVIRRIQ	8	Unmodified	_PVVIRRIQ_					0	0	0		ENSG00000223510|ENST00000420162|CDRT15	ENSG00000223510|ENST00000420162|CDRT15	ENSG00000223510|ENST00000420162|CDRT15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.8216247558594	2	490.821818	979.629084	-0.026738	-1.3124E-05	-0.269	-0.00013203	-0.29573	-0.00014515	490.82159306299894	39.218	0.58319	39.218	39.012	39.595	0					49	20	3	0	0	0	0.35375	1	8251	8251		24.674	1.5255	1	571120			34680	8436	20337	20338	42039	42039					0.1384545205065706
PVVKWSHKYQK	11	Unmodified	_PVVKWSHKYQK_					0	0	0			REV__ENST00000549045.5_1_12:49883323-49884500:+|nuORF	REV__ENST00000549045.5_1_12:49883323-49884500:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.771484375	3	467.266345	1398.7772	-0.28707	-0.00013414	-0.58184	-0.00027187	-0.86891	-0.00040601	467.2659978217786	39.772	0.59396	39.772	39.43	40.024	0					31	21	2	0	0	0	0.32824	1	8383	8383		12.856	4.4116	1	187210	+		34681	22193	20338	20339	42040	42040					0.09376718513840387
PVVLPDLDD	9	Unmodified	_PVVLPDLDD_					0	0	0		ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2393798828125	2	491.758215	981.501877	0.2613	0.00012849	1.3475	0.00066265	1.6088	0.00079114	491.75909395865966	28.652	0.53329	28.652	28.418	28.952	0					23	18	2	0	0	0	0.24913	1	5109	5109		12.532	3.9383	1	111910			34682	4811	20339	20340	42041	42041					0.010386415951415984
PVVLPDLDD	9	Unmodified	_PVVLPDLDD_					0	0	0		ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	491.758215	981.501877	0.25278	0.00012431	1.769	0.00086991	2.0218	0.00099422	491.75919605603434	28.672	0.42957	28.667	28.438	28.867	-0.0042572	0.0079405	0.00028733	NaN	7.9102	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73554			34683	4811	20339	20340							0.010386415951415984
PVVLPSSRVT	10	Unmodified	_PVVLPSSRVT_					0	0	0		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7640991210938	2	527.816399	1053.61824	0.54112	0.00028561	-1.5732	-0.00083036	-1.0321	-0.00054475	527.8161258904213	37.418	1.9515	37.511	37.142	39.094	0.093018					92	70	2	0	0	0	0.3156	1	7857	7857		10.824	2.9138	1	1043500			34684	2307	20340	20341	42042	42042					0.09358004885712035
PVVLQLKLFL	10	Unmodified	_PVVLQLKLFL_					0	0	0		ENST00000452600.1_1_2:130987586-130988813:+|nuORF	ENST00000452600.1_1_2:130987586-130988813:+|nuORF	ENST00000452600.1_1_2:130987586-130988813:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.3848876953125	2	585.38646	1168.75837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.2	1	112.2	111.7	112.7	0								0	0	0	0.38126	1	29173	29173		1.6526	0	1				34685	10660	20341	20342	42043	42043					0.1807378889006941
PVVMGEVVAL	10	Unmodified	_PVVMGEVVAL_					0	0	0		ENST00000554546.5_1_14:73925238-73925304:-|nuORF	ENST00000554546.5_1_14:73925238-73925304:-|nuORF	ENST00000554546.5_1_14:73925238-73925304:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2901611328125	2	507.288628	1012.5627	0.35412	0.00017964	2.1113	0.001071	2.4654	0.0012507	507.2899215025185	37.155	0.95225	37.242	36.95	37.903	0.08741					92	34	4	0	0	0	0.18807	1	7652	7652		34.102	1.6488	1	767930			34686	11834	20342	20343	42044	42044					0.05692455373730354
PVVPSVVF	8	Unmodified	_PVVPSVVF_					0	0	0		chr2:69789926-69790680|323|10.1|0.0|19.95|-|2|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|50	chr2:69789926-69790680|323|10.1|0.0|19.95|-|2|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|50	chr2:69789926-69790680|323|10.1|0.0|19.95|-|2|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7513427734375	2	422.252372	842.49019	0.10925	4.613E-05	1.2696	0.00053608	1.3788	0.00058221	422.2529236208722	66.409	0.7334	66.409	65.955	66.688	0					37	25	2	0	0	0	0.33995	1	16570	16570		10.183	0	1	227340			34687	154	20343	20344	42045	42045					0.06264489362479253
PVVPTKSRII	10	Unmodified	_PVVPTKSRII_					0	0	0		CYP27A1|p.N403K|1|0.06|ENSG00000135929|chr2:218814404-218814404|C/A|missense_variant	CYP27A1|p.N403K|1|0.06|ENSG00000135929|chr2:218814404-218814404|C/A|missense_variant	CYP27A1|p.N403K|1|0.06|ENSG00000135929|chr2:218814404-218814404|C/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3536987304688	2	555.355691	1108.69683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.13	1	112.13	111.63	112.63	0								0	0	0	0.38166	1	29156	29156		1.4819	0	1				34688	254	20344	20345	42046	42046					0.14682857190791765
PVVSTLEI	8	Unmodified	_PVVSTLEI_					0	0	0			REV__ENSG00000136152|ENST00000349995|COG3	REV__ENSG00000136152|ENST00000349995|COG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.1962890625	2	429.252569	856.490584	0.097829	4.1994E-05	1.6103	0.00069122	1.7081	0.00073321	429.2530446605564	36.183	0.61506	36.265	36.036	36.651	0.082355					30	21	3	0	0	0	0.32778	1	7273	7273		20.871	0	1	295360	+		34689	15793	20345	20346	42047	42047					0.05659864291669692
PVVSTLEI	8	Unmodified	_PVVSTLEI_					0	0	0			REV__ENSG00000136152|ENST00000349995|COG3	REV__ENSG00000136152|ENST00000349995|COG3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	429.252569	856.490584	0.024564	1.0544E-05	1.6695	0.00071666	1.6941	0.0007272	429.25321413176454	36.275	0.49909	36.275	36.012	36.511	0	0.023387	6.3643E-05	NaN	20.871	27	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288840	+		34690	15793	20345	20346							0.05659864291669692
PVVSTLEI	8	Unmodified	_PVVSTLEI_					0	0	0			REV__ENSG00000136152|ENST00000349995|COG3	REV__ENSG00000136152|ENST00000349995|COG3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	429.252569	856.490584	0.23476	0.00010077	1.506	0.00064646	1.7408	0.00074723	429.2531721189531	36.129	0.67175	36.215	36.009	36.68	0.08625	-0.03642	-7.675E-05	NaN	20.871	30	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191010	+		34691	15793	20345	20346							0.05659864291669692
PVVSVQMIKKH	11	Unmodified	_PVVSVQMIKKH_					0	0	0		ENSG00000175318|ENST00000309731|GRAMD2A	ENSG00000175318|ENST00000309731|GRAMD2A	ENSG00000175318|ENST00000309731|GRAMD2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.9186706542969	3	422.584797	1264.73256	0.12682	5.3591E-05	3.2152	0.0013587	3.342	0.0014123	422.5859974322625	44.634	0.14059	44.703	44.651	44.791	0.068569					6	4	2	0	0	0	0.3322	1	9898	9898		1.2148	0.10508	1	313610			34692	6858	20346	20347	42048	42048					0.11078571376151558
PVVVVSQL	8	Unmodified	_PVVVVSQL_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.7630615234375	2	420.763104	839.511654	-0.059249	-2.493E-05	-0.1501	-6.3158E-05	-0.20935	-8.8087E-05	420.7630545955492	67.442	0.91779	67.426	66.921	67.838	-0.016296					74	31	3	0	0	0	0.16948	1	16948	16948		48.346	0	1	582940	+		34693	18154	20347	20348	42049	42049					0.08547874391183541
PVVWKQLQL	9	Unmodified	_PVVWKQLQL_					0	0	0		ENST00000373503.7_1_9:128432177-128469396:-|nuORF	ENST00000373503.7_1_9:128432177-128469396:-|nuORF	ENST00000373503.7_1_9:128432177-128469396:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3126831054688	2	555.837134	1109.65972	0.1021	5.6752E-05	-0.66457	-0.00036939	-0.56247	-0.00031264	555.8368172897888	102.21	0.61787	102.23	101.86	102.47	0.016685					127	89	2	0	0	0	0.25202	1	27168	27168		10.824	3.5347	1	93122			34694	9867	20348	20349	42050	42050					0.10927185645050486
PVVWKQLQL	9	Unmodified	_PVVWKQLQL_					0	0	0		ENST00000373503.7_1_9:128432177-128469396:-|nuORF	ENST00000373503.7_1_9:128432177-128469396:-|nuORF	ENST00000373503.7_1_9:128432177-128469396:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3141479492188	2	555.837134	1109.65972	0.19949	0.00011088	-0.56158	-0.00031215	-0.36209	-0.00020126	555.8368875121487	102.19	0.34074	102.19	102.06	102.41	-0.0033646					75	50	2	0	0	0	0.2451	1	27266	27266		15.847	4.2069	1	79800			34695	9867	20348	20349	42051	42051					0.10927185645050486
PVVWKQLQL	9	Unmodified	_PVVWKQLQL_					0	0	0		ENST00000373503.7_1_9:128432177-128469396:-|nuORF	ENST00000373503.7_1_9:128432177-128469396:-|nuORF	ENST00000373503.7_1_9:128432177-128469396:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	555.837134	1109.65972	-0.087586	-4.8684E-05	-0.43684	-0.00024281	-0.52443	-0.0002915	555.8369794275543	102.2	0.53294	102.2	101.91	102.45	0	-0.0080153	0.00012551	NaN	15.847	121	77	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75153			34696	9867	20348	20349							0.10927185645050486
PVWPLGGGG	9	Unmodified	_PVWPLGGGG_					0	0	0		ENST00000469108.1_1_7:150753939-150754935:-|nuORF	ENST00000469108.1_1_7:150753939-150754935:-|nuORF	ENST00000469108.1_1_7:150753939-150754935:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.2346496582031	2	420.224146	838.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.858	1	48.858	48.358	49.358	0								0	0	0	0.24077	1	11213	11213		9.3474	1.4373	1				34697	10850	20349	20350	42052	42052					0.008058615258278223
PVWRGNVKF	9	Unmodified	_PVWRGNVKF_					0	0	0		ENST00000299767.9_1_12:104341429-104341594:+|nuORF	ENST00000299767.9_1_12:104341429-104341594:+|nuORF	ENST00000299767.9_1_12:104341429-104341594:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2576293945312	2	551.811451	1101.60835	0.42762	0.00023596	1.1078	0.00061129	1.5354	0.00084726	552.3133736229189	71.778	0.63733	71.778	71.521	72.158	0					51	22	3	0	0	0	0.23783	1	18193	18193		18.135	2.2878	1	318640			34698	9217	20350	20351	42053	42053					0.06160861670991835
PVWRSSVF	8	Unmodified	_PVWRSSVF_					0	0	0			REV__nc|ENSG00000146151|Q8TB92-5|HMGCLL1	REV__nc|ENSG00000146151|Q8TB92-5|HMGCLL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.263671875	2	489.263802	976.513051	0.37799	0.00018494	-0.19237	-9.4119E-05	0.18562	9.0818E-05	489.26386784368503	52.751	1.6469	52.751	52.267	53.914	0					183	60	5	0	0	0	0.37937	1	12605	12605		21.747	0	1	24440000	+		34699	16331	20351	20352	42054	42054					0.023855084799492943
PVWRSSVF	8	Unmodified	_PVWRSSVF_					0	0	0			REV__nc|ENSG00000146151|Q8TB92-5|HMGCLL1	REV__nc|ENSG00000146151|Q8TB92-5|HMGCLL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.263916015625	2	489.263802	976.513051	0.49695	0.00024314	-0.27967	-0.00013683	0.21728	0.00010631	489.2638233132455	52.702	1.7176	52.752	52.172	53.89	0.050575					210	63	7	0	0	0	0.27124	3	12350	12350;12399;12497		34.102	5.6156	1	23115000	+		34700	16331	20351	20352	42055;42056;42057	42055					0.023855084799492943
PVWRSSVF	8	Unmodified	_PVWRSSVF_					0	0	0			REV__nc|ENSG00000146151|Q8TB92-5|HMGCLL1	REV__nc|ENSG00000146151|Q8TB92-5|HMGCLL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2638244628906	2	489.263802	976.513051	0.31309	0.00015318	-0.026242	-1.2839E-05	0.28685	0.00014034	489.2639170266812	52.862	1.8545	52.861	52.245	54.1	-0.001236					209	68	6	0	0	0	0.32038	2	12564	12564;12610		28.487	0	1	22454000	+		34701	16331	20351	20352	42058;42059	42058					0.023855084799492943
PVWYRCLF	8	Unmodified	_PVWYRCLF_					0	0	0			REV__nc|ENSG00000177731|Q13045-3|FLII	REV__nc|ENSG00000177731|Q13045-3|FLII	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8396606445312	2	542.275855	1082.53716	0.49474	0.00026829	2.3265	0.0012616	2.8212	0.0015299	542.2771501257432	52.653	0.3765	52.652	52.495	52.872	-0.00080872					21	13	2	0	0	0	0.32778	1	12342	12342		14.582	0	1	444500	+		34702	18003	20352	20353	42060	42060					-0.0008097435807030706
PVYDSYEV	8	Unmodified	_PVYDSYEV_					0	0	0		nc|ENSG00000063015|Q53EL9-2|SEZ6;nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6;nc|ENSG00000063015|Q53EL9-4|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2213439941406	2	486.221465	970.428378	0.33214	0.00016149	-0.89291	-0.00043415	-0.56077	-0.00027266	486.2209876271974	30.219	0.75885	30.219	29.86	30.619	0					38	26	2	0	0	0	0.34185	1	5533	5533		10.183	10.183	1	193870			34703	769	20353	20354	42061	42061					-0.05801906847329974
PVYEKPFDFPS	11	Unmodified	_PVYEKPFDFPS_					0	0	0		ENSG00000277462|ENST00000366503|ZNF670	ENSG00000277462|ENST00000366503|ZNF670	ENSG00000277462|ENST00000366503|ZNF670	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7750549316406	3	442.551928	1324.63395	-0.09437	-4.1764E-05	-4.2335	-0.0018736	-4.3279	-0.0019153	442.8842541510698	14.799	0.17102	14.799	14.729	14.9	0					7	5	2	0	0	0	0.33287	1	839	839		2.8433	1.6285	1	11240			34704	8732	20354	20355	42062	42062					-0.015377533879245675
PVYIAMLLTFV	11	Unmodified	_PVYIAMLLTFV_					0	0	0			REV__ENSG00000101438|ENST00000217420|SLC32A1	REV__ENSG00000101438|ENST00000217420|SLC32A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.2301940917969	3	422.910399	1265.70937	0.18047	7.6324E-05	0.46923	0.00019844	0.6497	0.00027476	423.2454263307642	20.506	0.084822	20.396	20.35	20.435	-0.11003					4	2	2	0	0	0	0.33326	1	2553	2553		1.4551	0	1	26733	+		34705	14271	20355	20356	42063	42063					0.08714132538784725
PVYIGEDST	9	Unmodified	_PVYIGEDST_					0	0	0		nc|ENSG00000182253|O15061-2|SYNM;ENSG00000182253|ENST00000336292|SYNM	nc|ENSG00000182253|O15061-2|SYNM	nc|ENSG00000182253|O15061-2|SYNM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.732666015625	2	490.732197	979.449842	0.31755	0.00015583	1.2526	0.00061471	1.5702	0.00077054	490.7325077417649	66.333	0.80945	66.319	66.032	66.842	-0.013596					62	29	3	0	0	0	0.20344	1	16589	16589		23.148	0.69579	1	567920			34706	7284	20356	20357	42064	42064					-0.040705218186189995
PVYSGFAFENP	11	Unmodified	_PVYSGFAFENP_					0	0	0			REV__ENSG00000135338|ENST00000369846|LCA5	REV__ENSG00000135338|ENST00000369846|LCA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5699768066406	3	409.860873	1226.56079	-0.22658	-9.2865E-05	2.5027	0.0010258	2.2761	0.0009329	409.8621961668261	25.516	0.50434	25.485	25.209	25.713	-0.03141					35	17	3	0	0	0	0.33149	1	4118	4118		4.4062	2.3201	1	61827	+		34707	15735	20357	20358	42065	42065					-0.04342882110518076
PVYSGFAFENP	11	Unmodified	_PVYSGFAFENP_					0	0	0			REV__ENSG00000135338|ENST00000369846|LCA5	REV__ENSG00000135338|ENST00000369846|LCA5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	409.860873	1226.56079	-0.16896	-6.925E-05	2.1781	0.00089272	2.0091	0.00082347	409.86168121864193	25.452	0.29361	25.452	25.21	25.504	0	-0.0063996	-0.00054441	NaN	4.4062	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51848	+		34708	15735	20357	20358							-0.04342882110518076
PWAKSALF	8	Unmodified	_PWAKSALF_					0	0	0		ENST00000397501.5_1_8:27316549-27316885:+|nuORF	ENST00000397501.5_1_8:27316549-27316885:+|nuORF	ENST00000397501.5_1_8:27316549-27316885:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.6025085449219	2	460.255446	918.496338	-0.1914	-8.8092E-05	2.0884	0.00096119	1.897	0.0008731	460.2566701511198	18.664	0.35797	18.606	18.458	18.816	-0.058174					24	12	2	0	0	0	0.344	1	1976	1976		2.5775	0	1	25272			34709	10140	20358	20359	42066	42066					0.0338300759399317
PWARSPPP	8	Unmodified	_PWARSPPP_					0	0	0		ENST00000461007.6_1_X:155253834-155254005:+|nuORF	ENST00000461007.6_1_X:155253834-155254005:+|nuORF	ENST00000461007.6_1_X:155253834-155254005:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2835693359375	2	454.24287	906.471186	0.18272	8.3001E-05	0.78853	0.00035818	0.97125	0.00044118	454.2431037820892	90.629	0.16349	90.629	90.549	90.712	0					16	11	2	0	0	0	0.3439	1	24049	24049		2.8892	2.0956	1	51848			34710	10740	20359	20360	42067	42067					0.014209527914204045
PWCGSSRSSFP	11	Unmodified	_PWCGSSRSSFP_					0	0	0		MED12L|p.Q2074Sfs*63|1|0.33|ENSG00000144893|chr3:151416336-151416336|C/-|frameshift_variant	MED12L|p.Q2074Sfs*63|1|0.33|ENSG00000144893|chr3:151416336-151416336|C/-|frameshift_variant	MED12L|p.Q2074Sfs*63|1|0.33|ENSG00000144893|chr3:151416336-151416336|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.2156982421875	3	404.181841	1209.52369	0.11235	4.5409E-05	1.5694	0.00063434	1.6818	0.00067975	404.1820755401434	29.195	0.48584	29.195	29.006	29.492	0					41	17	3	0	0	0	0.329	1	5266	5266		1.2148	0	1	173010			34711	12524	20360	20361	42068	42068					-0.07268876927923884
PWDRWLQIL	9	Unmodified	_PWDRWLQIL_					0	0	0		ENST00000479736.1_1_13:98654953-98655121:+|nuORF	ENST00000479736.1_1_13:98654953-98655121:+|nuORF	ENST00000479736.1_1_13:98654953-98655121:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.32568359375	2	613.837665	1225.66078	0.18166	0.00011151	-0.59525	-0.00036539	-0.41359	-0.00025388	613.8372883435765	27.012	0.38338	27.012	26.789	27.172	0					21	13	2	0	0	0	0.26145	1	4468	4468		2.0598	1.0975	1	67661			34712	10997	20361	20362	42069	42069					0.05697400013946208
PWDRWLQIL	9	Unmodified	_PWDRWLQIL_					0	0	0		ENST00000479736.1_1_13:98654953-98655121:+|nuORF	ENST00000479736.1_1_13:98654953-98655121:+|nuORF	ENST00000479736.1_1_13:98654953-98655121:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	613.837665	1225.66078	0.15393	9.4488E-05	-0.33974	-0.00020854	-0.18581	-0.00011406	613.8373396394097	27.002	0.3452	26.981	26.813	27.158	-0.021412	-0.012582	0.0001285	NaN	2.0598	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66750			34713	10997	20361	20362							0.05697400013946208
PWDRWLQIL	9	Unmodified	_PWDRWLQIL_					0	0	0		ENST00000479736.1_1_13:98654953-98655121:+|nuORF	ENST00000479736.1_1_13:98654953-98655121:+|nuORF	ENST00000479736.1_1_13:98654953-98655121:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	613.837665	1225.66078	0.27414	0.00016828	-0.37506	-0.00023023	-0.10092	-6.1948E-05	613.8373413301296	27	0.416	26.988	26.797	27.213	-0.01156	-0.0054122	8.5135E-05	NaN	2.0598	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84115			34714	10997	20361	20362							0.05697400013946208
PWFLRVPHRFQ	11	Unmodified	_PWFLRVPHRFQ_					0	0	0			REV__nc|ENSG00000203877|Q5TAB7-2|RIPPLY2	REV__nc|ENSG00000203877|Q5TAB7-2|RIPPLY2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.740966796875	3	494.942084	1481.80442	0.35214	0.00017429	0.71635	0.00035455	1.0685	0.00052884	494.9426054126266	26.916	0.87887	26.894	26.388	27.266	-0.02141					69	30	3	0	0	0	0.33347	1	4410	4410		0.45452	0.45452	1	362930	+		34715	18909	20362	20363	42070	42070					0.08279246844881527
PWGGLFIPG	9	Unmodified	_PWGGLFIPG_					0	0	0			REV__ENST00000291715.5_1_19:51870445-51870788:-|nuORF	REV__ENST00000291715.5_1_19:51870445-51870788:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.72906494140625	2	472.255446	942.496338	-0.082055	-3.8751E-05	-0.77909	-0.00036793	-0.86114	-0.00040668	472.25503671062484	22.5	0.83627	22.5	22.16	22.996	0					42	28	3	0	0	0	0.25291	1	3127	3127		9.3474	2.0582	1	78469	+		34716	19759	20363	20364	42071	42071					0.02279007593995175
PWGILLMLLR	10	Unmodified	_PWGILLMLLR_					0	0	0		ENST00000451786.5_1_7:130737210-130792560:-|nuORF	ENST00000451786.5_1_7:130737210-130792560:-|nuORF	ENST00000451786.5_1_7:130737210-130792560:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8721313476562	2	606.370287	1210.72602	0.27499	0.00016675	0.6944	0.00042106	0.96939	0.00058781	606.3706928188358	113.08	0.5285	113.06	112.93	113.46	-0.017311					79	63	2	0	0	0	0.41805	1	29397	29397		0.45834	0.057624	1	37651			34717	10649	20364	20365	42072	42072					0.12908678215421787
PWHHPGQHR	9	Unmodified	_PWHHPGQHR_					0	0	0		ENST00000292539.8_1_8:145725553-145725943:+|nuORF	ENST00000292539.8_1_8:145725553-145725943:+|nuORF	ENST00000292539.8_1_8:145725553-145725943:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.2839965820312	2	576.283923	1150.55329	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.213	1	18.096	17.596	18.596	-0.11739								0	0	0	0.26704	1	1866	1866		0.6015	0	1				34718	9162	20365	20366	42073	42073					-0.015961320769292797
PWHLPYYQ	8	Unmodified	_PWHLPYYQ_					0	0	0		ENST00000371361.3_1_10:96112804-96114802:-|nuORF	ENST00000371361.3_1_10:96112804-96114802:-|nuORF	ENST00000371361.3_1_10:96112804-96114802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7676391601562	2	552.269084	1102.52362	0.0061034	3.3707E-06	2.2504	0.0012428	2.2565	0.0012462	552.2700458896934	12.256	0.2969	12.256	12.171	12.468	0					15	9	2	0	0	0	0.34434	1	117	117		0.79363	0.10326	1	29405			34719	9815	20366	20367	42074	42074					-0.023545088656419466
PWHLPYYQ	8	Unmodified	_PWHLPYYQ_					0	0	0		ENST00000371361.3_1_10:96112804-96114802:-|nuORF	ENST00000371361.3_1_10:96112804-96114802:-|nuORF	ENST00000371361.3_1_10:96112804-96114802:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	552.269084	1102.52362	-0.087806	-4.8492E-05	3.0194	0.0016675	2.9316	0.001619	552.2706716462732	12.266	0.10739	12.198	12.118	12.226	-0.068059	-0.0013538	7.9534E-05	NaN	0.79363	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35069			34720	9815	20366	20367							-0.023545088656419466
PWLRWLPF	8	Unmodified	_PWLRWLPF_					0	0	0			REV__ENST00000554848.5_1_14:105246507-105260476:-|nuORF	REV__ENST00000554848.5_1_14:105246507-105260476:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8133544921875	2	557.813462	1113.61237	0.22345	0.00012464	-0.074028	-4.1294E-05	0.14942	8.3349E-05	557.8129826921627	92.872	0.9942	92.872	92.353	93.348	0					230	81	4	0	0	0	0.4397	1	24602	24602		9.3474	9.3474	1	532130	+		34721	22239	20367	20368	42075	42075					0.060109511646714964
PWLSRLPRVY	10	Unmodified	_PWLSRLPRVY_					0	0	0		ENST00000412846.5_3_1:156708347-156710822:-|nuORF	ENST00000412846.5_3_1:156708347-156710822:-|nuORF	ENST00000412846.5_3_1:156708347-156710822:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	643.2685546875	2	643.87204	1285.72953	0.55955	0.00036028	-1.1915	-0.00076715	-0.63192	-0.00040688	643.8712490987157	64.71	0.3708	64.71	64.563	64.934	0					17	13	2	0	0	0	0.31889	1	16097	16097		6.2058	2.2614	1	138540			34722	10280	20368	20369	42076	42076					0.09809064313640192
PWPNVVLL	8	Unmodified	_PWPNVVLL_					0	0	0		ENST00000341329.7_1_2:227860472-227860832:+|nuORF	ENST00000341329.7_1_2:227860472-227860832:+|nuORF	ENST00000341329.7_1_2:227860472-227860832:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2936706542969	2	469.278921	936.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.487	1	88.487	87.987	88.987	0								0	0	0	0.37595	1	23377	23377		2.8892	0	1				34723	9523	20369	20370	42077	42077					0.07247867145144937
PWPPPPLI	8	Unmodified	_PWPPPPLI_					0	0	0		ENST00000433867.5_3_19:47219551-47220301:-|nuORF	ENST00000433867.5_3_19:47219551-47220301:-|nuORF	ENST00000433867.5_3_19:47219551-47220301:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7603759765625	2	458.768189	915.521825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.252	1	78.252	77.752	78.752	0								0	0	0	0.35779	1	20237	20237		11.114	0.93107	1				34724	10493	20370	20371	42078	42078					0.060684821164159075
PWRFFFPL	8	Unmodified	_PWRFFFPL_					0	0	0		DNAJA3|p.K475Rfs*76|1|0.24|ENSG00000103423|chr16:4454892-4454892|T/-|frameshift_variant	DNAJA3|p.K475Rfs*76|1|0.24|ENSG00000103423|chr16:4454892-4454892|T/-|frameshift_variant	DNAJA3|p.K475Rfs*76|1|0.24|ENSG00000103423|chr16:4454892-4454892|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3009643554688	2	555.300188	1108.58582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.679	1	12.679	12.179	13.179	0								0	0	0	0.37992	1	198	198		0.79363	0	1				34725	269	20371	20372	42079	42079					0.03587262273367742
PWRVHRGR	8	Unmodified	_PWRVHRGR_					0	0	0			REV__ENST00000322147.8_2_11:65306929-65307783:-|nuORF	REV__ENST00000322147.8_2_11:65306929-65307783:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.304443359375	2	532.304659	1062.59476	0.16782	8.933E-05	-1.4533	-0.0007736	-1.2855	-0.00068427	532.3038838806642	17.499	0.34232	17.382	17.231	17.573	-0.11739					16	11	2	0	0	0	0.46491	1	1684	1684		0.69038	0.088878	1	44990	+		34726	19975	20372	20373	42080	42080					0.06597048682419882
PWSGLILSF	9	Unmodified	_PWSGLILSF_					0	0	0		ENST00000560966.5_1_15:85191115-85191289:-|nuORF;ENST00000558608.1_1_15:85189295-85191289:-|nuORF;ENST00000559015.5_1_15:85186703-85191289:-|nuORF	ENST00000560966.5_1_15:85191115-85191289:-|nuORF	ENST00000560966.5_1_15:85191115-85191289:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8039855957031	2	510.28166	1018.54877	0.42475	0.00021674	0.93662	0.00047794	1.3614	0.00069469	510.2821217370531	89.154	1.2587	89.154	88.487	89.746	0					99	65	2	0	0	0	0.13898	1	23557	23557		43.858	5.8843	1	233500			34727	11877	20373	20374	42081	42081					0.040235459369455384
PWWLMLPFH	9	Unmodified	_PWWLMLPFH_					0	0	0			REV__ENST00000342085.8_1_16:2648895-2649351:+|nuORF	REV__ENST00000342085.8_1_16:2648895-2649351:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.2422790527344	3	409.544162	1225.61066	-0.15737	-6.4449E-05	1.9463	0.00079708	1.7889	0.00073263	409.5447494942056	15.721	0.58869	15.656	15.275	15.864	-0.064413					28	19	2	0	0	0	0.26228	1	1015	1015		1.1933	0	1	32365	+		34728	20120	20374	20375	42082	42082					0.006875740844179745
PWYDWKYP	8	Unmodified	_PWYDWKYP_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-2|USP34	REV__nc|ENSG00000115464|Q70CQ2-2|USP34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.7662353515625	2	577.768917	1153.52328	-0.0091577	-5.291E-06	1.0645	0.00061505	1.0554	0.00060976	577.7691369904237	30.435	0.89544	30.463	29.838	30.733	0.027157					47	30	3	0	0	0	0.4354	1	5486	5486		10.824	4.6181	1	328640	+		34729	14879	20375	20376	42083	42083					-0.04733928585505964
PYAIFALDF	9	Unmodified	_PYAIFALDF_					0	0	0			REV__ENSG00000268104|ENST00000598581|SLC6A14	REV__ENSG00000268104|ENST00000598581|SLC6A14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7741088867188	2	528.773668	1055.53278	0.36213	0.00019149	0.080686	4.2665E-05	0.44282	0.00023415	528.7736114257111	93.92	1.6328	93.92	93.605	95.238	0					344	137	5	0	0	0	0.24581	1	25176	25176		16.942	0	1	976040	+		34730	19305	20376	20377	42084	42084					0.00723839700026474
PYAKPIPAQF	10	Unmodified	_PYAKPIPAQF_					0	0	0		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.3145141601562	2	566.313492	1130.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.969	1	46.969	46.469	47.469	0								0	0	0	3.0386E-06	1	10628	10628		114.65	61.073	1				34731	3990	20377	20378	42085	42085					0.05234906374039383
PYAKPIPAQF	10	Unmodified	_PYAKPIPAQF_					0	0	0		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.3142700195312	2	566.313492	1130.61243	0.42045	0.00023811	0.76831	0.00043511	1.1888	0.00067321	566.3139423142597	46.929	0.47865	46.981	46.764	47.243	0.052574					32	17	2	0	0	0	0.001143	1	10618	10618		118.89	92.011	1	658190			34732	3990	20377	20378	42086	42086					0.05234906374039383
PYAKPIPAQF	10	Unmodified	_PYAKPIPAQF_					0	0	0		ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	ENSG00000136709|ENST00000322313|WDR33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.3135986328125	2	566.313492	1130.61243	0.71533	0.0004051	0.57322	0.00032462	1.2886	0.00072973	566.3135695966416	46.938	0.48772	46.992	46.796	47.284	0.054371					34	16	3	0	0	0	0.0023361	1	10603	10603		107.19	82.513	1	645510			34733	3990	20377	20378	42087	42087					0.05234906374039383
PYASTTGNYS	10	Unmodified	_PYASTTGNYS_					0	0	0			REV__ENSG00000176165|ENST00000313071|FOXG1	REV__ENSG00000176165|ENST00000313071|FOXG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3009643554688	2	530.732729	1059.4509	0.22511	0.00011947	-2.1715	-0.0011525	-1.9464	-0.001033	530.7316367846423	23.319	0.24755	23.232	23.077	23.325	-0.087608					11	8	2	0	0	0	0.31482	1	3433	3433		11.64	0.81637	1	46626	+		34734	17924	20378	20379	42088	42088					-0.07644307449731969
PYAVLLEAL	9	Unmodified	_PYAVLLEAL_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.78955078125	2	494.789318	987.564084	0.64589	0.00031958	-0.65553	-0.00032435	-0.0096387	-4.7691E-06	494.7889167951022	84.491	0.68998	84.491	84.23	84.92	0					57	25	3	0	0	0	0.2451	1	22176	22176		15.847	4.2069	1	410220			34735	2375	20379	20380	42089	42089					0.06980412734139918
PYAVLLEAL	9	Unmodified	_PYAVLLEAL_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	494.789318	987.564084	0.63732	0.00031534	-0.64107	-0.00031719	-0.0037474	-1.8542E-06	494.78892177948626	84.422	1.1831	84.499	84.201	85.384	0.077095	0.014597	8.2106E-05	NaN	28.487	75	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428930			34736	2375	20379	20380							0.06980412734139918
PYAVLLEAL	9	Unmodified	_PYAVLLEAL_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	494.789318	987.564084	0.57255	0.00028329	-0.88737	-0.00043906	-0.31483	-0.00015577	494.78892540237314	84.477	1.0205	84.464	84.225	85.245	-0.012833	-0.020864	-0.00016163	NaN	28.487	61	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419560			34737	2375	20379	20380							0.06980412734139918
PYCCCCCSLSL	11	Unmodified	_PYCCCCCSLSL_					0	0	0		ENST00000377988.6_1_9:35829886-35834472:+|nuORF	ENST00000377988.6_1_9:35829886-35834472:+|nuORF	ENST00000377988.6_1_9:35829886-35834472:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.7786254882812	2	597.709659	1193.40476	0.49536	0.00029608	-0.75177	-0.00044934	-0.25641	-0.00015326	597.7091713123297	50.054	0.6215	50.054	49.675	50.296	0					30	22	2	0	0	0	0.32951	1	11509	11509		8.7454	3.8484	1	179500			34738	9948	20380	20381	42090	42090					-0.18420194535315204
PYCCCCCSLSL	11	Unmodified	_PYCCCCCSLSL_					0	0	0		ENST00000377988.6_1_9:35829886-35834472:+|nuORF	ENST00000377988.6_1_9:35829886-35834472:+|nuORF	ENST00000377988.6_1_9:35829886-35834472:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.778564453125	2	597.709659	1193.40476	0.66655	0.0003984	-1.1388	-0.00068069	-0.47229	-0.00028229	597.7089944115612	49.96	0.54739	50.005	49.695	50.242	0.044891					32	20	2	0	0	0	0.32951	1	11509	11509		8.7454	6.0102	1	157890			34739	9948	20380	20381	42091	42091					-0.18420194535315204
PYCGCFHY	8	Unmodified	_PYCGCFHY_					0	0	0			REV__ENST00000374843.8_1_6:32918343-32920806:-|nuORF	REV__ENST00000374843.8_1_6:32918343-32920806:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2872314453125	2	495.185849	988.357144	0.46514	0.00023033	-0.60199	-0.0002981	-0.13685	-6.7767E-05	495.1855448138656	59.11	0.47736	59.096	58.831	59.309	-0.014267					19	16	2	0	0	0	0.34297	1	14391	14391		6.3541	6.3541	1	142790	+		34740	20467	20381	20382	42092	42092					-0.13750021357350306
PYCGYVQFDEF	11	Unmodified	_PYCGYVQFDEF_					0	0	0			REV__ENSG00000123358|ENST00000394825|NR4A1	REV__ENSG00000123358|ENST00000394825|NR4A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.90582275390625	3	456.525273	1366.55399	0.2155	9.8379E-05	0.28779	0.00013139	0.50329	0.00022977	456.52526173457017	39.189	0.3809	39.289	39.184	39.565	0.099407					23	13	2	0	0	0	0.33182	1	8221	8221		3.0723	0	1	148590	+		34741	15187	20382	20383	42093	42093					-0.11462563053419217
PYCGYVQFDEF	11	Unmodified	_PYCGYVQFDEF_					0	0	0			REV__ENSG00000123358|ENST00000394825|NR4A1	REV__ENSG00000123358|ENST00000394825|NR4A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	456.525273	1366.55399	-0.23253	-0.00010616	0.53131	0.00024256	0.29878	0.0001364	456.52551131952094	39.468	0.40449	39.468	39.215	39.62	0	0.11977	0.00037647	NaN	3.0723	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154300	+		34742	15187	20382	20383							-0.11462563053419217
PYCGYVQFDEF	11	Unmodified	_PYCGYVQFDEF_					0	0	0			REV__ENSG00000123358|ENST00000394825|NR4A1	REV__ENSG00000123358|ENST00000394825|NR4A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	456.525273	1366.55399	-0.04883	-2.2292E-05	-0.47521	-0.00021694	-0.52404	-0.00023924	456.5252142035522	39.195	0.32718	39.287	39.17	39.497	0.09267	-0.060646	-0.001002	NaN	3.0723	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162540	+		34743	15187	20382	20383							-0.11462563053419217
PYCHCQPE	8	Unmodified	_PYCHCQPE_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.6864929199219	2	488.686213	975.357872	0.36783	0.00017976	0.29804	0.00014565	0.66587	0.0003254	488.68622329296534	66.401	0.91289	66.485	66.05	66.963	0.083832					65	32	3	0	0	0	0.45851	1	16648	16648		2.8892	0.31174	1	337930			34744	6294	20383	20384	42094	42094					-0.13079226708293845
PYCQLLRLLK	10	Unmodified	_PYCQLLRLLK_					0	0	0			REV__ENSG00000196961|ENST00000354293|AP2A1	REV__ENSG00000196961|ENST00000354293|AP2A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.870361328125	2	623.870651	1245.72675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.718	1	95.718	95.218	96.218	0								0	0	0	0.38126	1	25554	25554		1.6526	0	1		+		34745	18700	20384	20385	42095	42095					0.11371472864470888
PYCRYWIT	8	Unmodified	_PYCRYWIT_					0	0	0		MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant;MGA|p.R2396Qfs*8|1|0.14|ENSG00000174197|chr15:41757835-41757835|G/-|frameshift_variant;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;MGA|p.Q992Rfs*2|1|0.24|ENSG00000174197|chr15:41711239-41711239|C/-|frameshift_variant;MGA|p.L263*|1|0.27|ENSG00000174197|chr15:41669678-41669678|G/-|frameshift_variant;MGA|p.A602Vfs*3|1|0.13|ENSG00000174197|chr15:41696814-41696815|-/TTTT|frameshift_variant	MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant	MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.7892456054688	2	551.262945	1100.51134	0.35614	0.00019633	-1.9681	-0.001085	-1.612	-0.00088862	551.2621799004238	67.475	0.34534	67.475	67.165	67.51	0					19	11	2	0	0	0	0.34046	1	16952	16952		9.3474	4.1168	1	375420			34746	6777	20385	20386	42096	42096					-0.03489868600331647
PYCRYWIT	8	Unmodified	_PYCRYWIT_					0	0	0		MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant;MGA|p.R2396Qfs*8|1|0.14|ENSG00000174197|chr15:41757835-41757835|G/-|frameshift_variant;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;MGA|p.Q992Rfs*2|1|0.24|ENSG00000174197|chr15:41711239-41711239|C/-|frameshift_variant;MGA|p.L263*|1|0.27|ENSG00000174197|chr15:41669678-41669678|G/-|frameshift_variant;MGA|p.A602Vfs*3|1|0.13|ENSG00000174197|chr15:41696814-41696815|-/TTTT|frameshift_variant	MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant	MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.7886962890625	2	551.262945	1100.51134	0.38506	0.00021227	-2.0637	-0.0011377	-1.6787	-0.00092539	551.262422120997	67.316	0.39329	67.394	67.068	67.461	0.078041					20	13	2	0	0	0	0.3366	1	16906	16906		12.532	1.7076	1	307080			34747	6777	20385	20386	42097	42097					-0.03489868600331647
PYCRYWIT	8	Unmodified	_PYCRYWIT_					0	0	0		MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant;MGA|p.R2396Qfs*8|1|0.14|ENSG00000174197|chr15:41757835-41757835|G/-|frameshift_variant;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;MGA|p.Q992Rfs*2|1|0.24|ENSG00000174197|chr15:41711239-41711239|C/-|frameshift_variant;MGA|p.L263*|1|0.27|ENSG00000174197|chr15:41669678-41669678|G/-|frameshift_variant;MGA|p.A602Vfs*3|1|0.13|ENSG00000174197|chr15:41696814-41696815|-/TTTT|frameshift_variant	MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant	MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	551.262945	1100.51134	0.25201	0.00013893	-1.84	-0.0010143	-1.588	-0.0008754	551.2625003753437	67.443	0.39267	67.426	67.086	67.478	-0.016296	-0.0055666	0.000146	NaN	12.532	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432560			34748	6777	20385	20386							-0.03489868600331647
PYDKIVKF	8	Unmodified	_PYDKIVKF_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7615661621094	2	505.289485	1008.56442	0.59551	0.0003009	-0.22989	-0.00011616	0.36562	0.00018474	505.28940420868037	56.384	0.7243	56.384	56.184	56.908	0					40	26	2	0	0	0	0.3366	1	13623	13623		18.135	9.5417	1	337740	+		34749	14358	20386	20387	42098	42098					0.06047832454009949
PYDKIVKF	8	Unmodified	_PYDKIVKF_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	505.289485	1008.56442	0.76125	0.00038465	-0.34701	-0.00017534	0.41424	0.00020931	505.289371762102	56.28	0.66155	56.359	56.117	56.778	0.078671	-0.070278	2.9069E-05	NaN	18.135	35	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361380	+		34750	14358	20386	20387							0.06047832454009949
PYDKKGAMQVP	11	Unmodified	_PYDKKGAMQVP_					0	0	0			REV__nc|ENSG00000130921|Q9H3J6-2|MTRFR	REV__nc|ENSG00000130921|Q9H3J6-2|MTRFR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.209716796875	3	411.881391	1232.62234	0.095997	3.9539E-05	2.826	0.001164	2.922	0.0012035	412.2181372419493	38.106	0.14426	38.204	38.15	38.294	0.097527					5	4	2	0	0	0	0.37965	1	7901	7901		7.4771	2.7611	1	61829	+		34751	15488	20387	20388	42099	42099					0.01533726317120454
PYDKPNTI	8	Unmodified	_PYDKPNTI_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.79168701171875	2	474.245275	946.475997	0.2095	9.9354E-05	-0.57579	-0.00027306	-0.36629	-0.00017371	474.24503000031905	68.519	0.37097	68.591	68.459	68.83	0.071938					22	13	2	0	0	0	0.32435	1	17264	17264		16.942	1.0951	1	175240			34752	4064	20388	20389	42100	42100					0.0006179214353778661
PYDKPNTI	8	Unmodified	_PYDKPNTI_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	474.245275	946.475997	0.29413	0.00013949	-0.81134	-0.00038478	-0.51721	-0.00024528	474.2447294259759	68.707	0.46302	68.688	68.458	68.921	-0.01915	0.048332	-0.00014201	NaN	16.942	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145680			34753	4064	20388	20389							0.0006179214353778661
PYDLLYSVV	9	Unmodified	_PYDLLYSVV_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2813110351562	2	534.784233	1067.55391	0.40774	0.00021805	1.4599	0.00078072	1.8676	0.00099877	535.2863430512198	99.832	0.26727	99.825	99.685	99.952	-0.006897					51	35	2	0	0	0	0.25879	1	26723	26723		2.0598	0.21551	1	120140	+		34754	15522	20389	20390	42101	42101					0.02283805008892159
PYDQYLHRF	9	Unmodified	_PYDQYLHRF_					0	0	0		CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;ENST00000586392.1_1_19:34884680-34890938:+|nuORF	CON__Q3ZBD7	CON__Q3ZBD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.53656005859375	3	413.536612	1237.58801	0.46985	0.0001943	-0.44384	-0.00018355	0.026005	1.0754E-05	413.5363167391694	45.191	0.73239	45.259	44.979	45.712	0.068569					61	25	4	0	0	0	0.033439	1	10069	10069		59.052	46.878	1	395350		+	34755	236	20390	20391	42102	42102					-0.021283537794943186
PYDQYLHRF	9	Unmodified	_PYDQYLHRF_					0	0	0		CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;ENST00000586392.1_1_19:34884680-34890938:+|nuORF	CON__Q3ZBD7	CON__Q3ZBD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5365295410156	3	413.536612	1237.58801	0.32882	0.00013598	-0.74489	-0.00030804	-0.41607	-0.00017206	413.5363539184855	45.167	0.66924	45.242	44.988	45.657	0.075047					57	24	3	0	0	0	0.018042	1	10062	10062		67.081	54.906	1	480150		+	34756	236	20390	20391	42103	42103					-0.021283537794943186
PYDQYLHRF	9	Unmodified	_PYDQYLHRF_					0	0	0		CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI;ENST00000586392.1_1_19:34884680-34890938:+|nuORF	CON__Q3ZBD7	CON__Q3ZBD7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	413.536612	1237.58801	0.26802	0.00011084	-0.14123	-5.8404E-05	0.12679	5.2431E-05	413.53640194709044	45.588	0.66216	45.588	45.341	46.003	0	0.22495	0.00045383	NaN	67.081	55	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435500		+	34757	236	20390	20391							-0.021283537794943186
PYDSVKKI	8	Unmodified	_PYDSVKKI_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.2712097167969	2	475.271293	948.528032	0.20109	9.5574E-05	-0.37236	-0.00017697	-0.17127	-8.14E-05	475.2709386792187	30.471	0.74655	30.471	30.034	30.781	0					58	26	3	0	0	0	0.024395	2	5558	5558;5604		96.111	54.016	1	388300			34758	8366	20391	20392	42104;42105	42104					0.051709555572983845
PYDSVKKI	8	Unmodified	_PYDSVKKI_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.27117919921875	2	475.271293	948.528032	0.30995	0.00014731	-0.34654	-0.0001647	-0.036582	-1.7386E-05	475.27093117703265	30.495	0.73733	30.523	30.103	30.841	0.027948					60	25	3	0	0	0	0.024395	1	5557	5557		96.111	45.256	1	302510			34759	8366	20391	20392	42106	42106					0.051709555572983845
PYDSVKKI	8	Unmodified	_PYDSVKKI_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.2710266113281	2	475.271293	948.528032	-0.024535	-1.1661E-05	0.0089984	4.2767E-06	-0.015537	-7.3843E-06	475.27112815237564	30.493	0.82779	30.52	29.956	30.784	0.027157					57	28	3	0	0	0	0.024395	1	5602	5602		96.111	54.016	1	414930			34760	8366	20391	20392	42107	42107					0.051709555572983845
PYECNECGEV	10	Unmodified	_PYECNECGEV_					0	0	0		RBAK|p.K658E|1|0.35|ENSG00000146587|chr7:5065428-5065428|A/G|missense_variant	RBAK|p.K658E|1|0.35|ENSG00000146587|chr7:5065428-5065428|A/G|missense_variant	RBAK|p.K658E|1|0.35|ENSG00000146587|chr7:5065428-5065428|A/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2019653320312	2	571.710082	1141.40561	0.30067	0.00017189	1.8058	0.0010324	2.1065	0.0012043	572.2151553164929	71.839	0.11053	71.839	71.773	71.884	0					5	3	2	0	0	0	0.31847	1	18274	18274		6.7232	2.7788	1	71965			34761	13058	20392	20393	42108	42108					-0.15943617298762547
PYEFNDRGKS	10	Unmodified	_PYEFNDRGKS_					0	0	0		ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.7985229492188	2	606.785827	1211.5571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.182	1	57.182	56.682	57.682	0								0	0	0	0.34454	1	13783	13783		17.113	0.1706	1				34762	10461	20393	20394	42109	42109					-0.04021551884375185
PYEFNDRGKS	10	Unmodified	_PYEFNDRGKS_					0	0	0		ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	ENST00000430298.6_1_19:12222347-12224207:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.79833984375	2	606.785827	1211.5571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.426	1	57.409	56.909	57.909	-0.0172								0	0	0	0.34454	1	13851	13851		17.113	2.2746	1				34763	10461	20393	20394	42110	42110					-0.04021551884375185
PYEGGFFLF	9	Unmodified	_PYEGGFFLF_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7576293945312	2	538.758018	1075.50148	0.39309	0.00021178	0.0087706	4.7252E-06	0.40186	0.0002165	538.7578485780358	92.978	0.43381	92.978	92.79	93.224	0					64	36	2	0	0	0	0.1669	1	24735	24735		28.487	6.7402	1	106940			34764	5391	20394	20395	42111	42111					-0.03324733334056873
PYEGGFFLF	9	Unmodified	_PYEGGFFLF_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7579956054688	2	538.758018	1075.50148	0.39541	0.00021303	0.0011052	5.9542E-07	0.39651	0.00021363	538.7578632921642	92.804	0.50693	92.893	92.683	93.19	0.089195					96	44	3	0	0	0	0.20344	1	24686	24686		23.148	1.4018	1	275560			34765	5391	20394	20395	42112	42112					-0.03324733334056873
PYEGGFFLF	9	Unmodified	_PYEGGFFLF_					0	0	0		ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z;ENSG00000159202|ENST00000360943|UBE2Z	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	ENST00000513342.5_1_17:46990150-47004493:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.75830078125	2	538.758018	1075.50148	0.65768	0.00035433	-0.18057	-9.7286E-05	0.47711	0.00025705	538.7577800180204	92.929	0.59464	92.93	92.696	93.291	0.00046539					124	55	3	0	0	0	0.11517	2	24743	24743;24781		36.044	14.298	1	294400			34766	5391	20394	20395	42113;42114	42113					-0.03324733334056873
PYENLFITF	9	Unmodified	_PYENLFITF_					0	0	0			REV__ENSG00000109943|ENST00000227348|CRTAM	REV__ENSG00000109943|ENST00000227348|CRTAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.30810546875	2	572.289682	1142.56481	0.16497	9.4408E-05	-0.64793	-0.0003708	-0.48297	-0.0002764	572.2890713261224	76.419	0.27237	76.472	76.32	76.592	0.053413					11	9	2	0	0	0	0.21303	1	19687	19687		21.747	1.293	1	68917	+		34767	14657	20395	20396	42115	42115					-0.0007679261682369543
PYEQCFRY	8	Unmodified	_PYEQCFRY_					0	0	0		ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000504549.5_1_5:179044963-179045371:-|nuORF	ENST00000502904.5_1_5:179043989-179045371:-|nuORF	ENST00000502904.5_1_5:179043989-179045371:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8297729492188	2	553.242209	1104.46987	0.57053	0.00031564	0.90904	0.00050292	1.4796	0.00081856	553.2415635212412	77.287	0.62788	77.287	77.036	77.663	0					25	22	2	0	0	0	0.34185	1	19932	19932		5.7604	0	1	117230			34768	11284	20396	20397	42116	42116					-0.07819049359636665
PYERPPFAQI	10	Unmodified	_PYERPPFAQI_					0	0	0		ENSG00000066056|ENST00000372476|TIE1	ENSG00000066056|ENST00000372476|TIE1	ENSG00000066056|ENST00000372476|TIE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.804443359375	2	609.319306	1216.62406	0.64494	0.00039298	-0.33274	-0.00020275	0.3122	0.00019023	609.3189810204123	52.888	0.82054	52.938	52.553	53.373	0.050571					48	29	2	0	0	0	0.084702	2	12482	12482;12491		51.415	19.11	1	437530			34769	831	20397	20398	42117;42118	42117					0.02441103397381994
PYERPPFAQI	10	Unmodified	_PYERPPFAQI_					0	0	0		ENSG00000066056|ENST00000372476|TIE1	ENSG00000066056|ENST00000372476|TIE1	ENSG00000066056|ENST00000372476|TIE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	609.319306	1216.62406	0.45379	0.0002765	-0.95937	-0.00058457	-0.50559	-0.00030806	609.3189164352933	52.911	0.62458	52.911	52.686	53.311	0	-0.046886	-0.00069094	NaN	51.415	31	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269550			34770	831	20397	20398							0.02441103397381994
PYERPPFAQI	10	Unmodified	_PYERPPFAQI_					0	0	0		ENSG00000066056|ENST00000372476|TIE1	ENSG00000066056|ENST00000372476|TIE1	ENSG00000066056|ENST00000372476|TIE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	609.319306	1216.62406	0.32325	0.00019696	0.31599	0.00019254	0.63924	0.0003895	609.3193254300444	53.033	0.53882	53.024	52.708	53.247	-0.0096054	0.066192	0.00086327	NaN	51.415	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384800			34771	831	20397	20398							0.02441103397381994
PYEVSYRI	8	Unmodified	_PYEVSYRI_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.3087158203125	2	513.766374	1025.5182	0.41547	0.00021345	0.030616	1.573E-05	0.44609	0.00022918	513.7664338732787	46.699	0.4836	46.752	46.554	47.038	0.052574					34	17	3	0	0	0	0.2969	1	10528	10528		36.506	17.249	1	408820			34772	3719	20398	20399	42119	42119					0.0064576755189591495
PYEVSYRI	8	Unmodified	_PYEVSYRI_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.3087768554688	2	513.766374	1025.5182	0.37696	0.00019367	0.61058	0.00031369	0.98753	0.00050736	513.7666803236854	46.82	0.46326	46.874	46.574	47.037	0.054375					24	15	2	0	0	0	0.31768	1	10529	10529		27.629	10.687	1	409460			34773	3719	20398	20399	42120	42120					0.0064576755189591495
PYEVSYRI	8	Unmodified	_PYEVSYRI_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.766374	1025.5182	0.60885	0.00031281	0.14462	7.4299E-05	0.75347	0.00038711	513.7665826124406	46.903	0.59863	46.903	46.675	47.274	0	0.060225	-0.00013063	NaN	36.506	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424780			34774	3719	20398	20399							0.0064576755189591495
PYFDGHEKI	9	Unmodified	_PYFDGHEKI_					0	0	0			REV__ENSG00000137745|ENST00000260302|MMP13	REV__ENSG00000137745|ENST00000260302|MMP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.271240234375	2	553.269281	1104.52401	0.52159	0.00028858	2.0446	0.0011312	2.5662	0.0014198	553.2705876091027	77.153	0.76811	77.153	76.812	77.58	0					51	28	3	0	0	0	0.17277	1	19890	19890		27.629	4.8925	1	402860	+		34775	15881	20399	20400	42121	42121					-0.02407133936435457
PYFKHALTL	9	Unmodified	_PYFKHALTL_					0	0	0			REV__nc|ENSG00000160185|P57075-3|UBASH3A	REV__nc|ENSG00000160185|P57075-3|UBASH3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.8222045898438	2	545.30821	1088.60187	0.38441	0.00020962	0.20514	0.00011186	0.58955	0.00032148	545.3083676428976	40.131	1.4126	40.131	39.164	40.576	0					119	51	3	0	0	0	0.24688	1	8417	8417		14.838	0	1	595830	+		34776	16883	20400	20401	42122	42122					0.061109237195978494
PYFKHALTL	9	Unmodified	_PYFKHALTL_					0	0	0			REV__nc|ENSG00000160185|P57075-3|UBASH3A	REV__nc|ENSG00000160185|P57075-3|UBASH3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8224487304688	2	545.30821	1088.60187	0.70554	0.00038474	0.0063171	3.4448E-06	0.71186	0.00038818	545.3080494146172	39.877	1.2232	39.969	39.251	40.474	0.09267					105	43	3	0	0	0	0.24688	1	8379	8379		14.838	0	1	679360	+		34777	16883	20400	20401	42123	42123					0.061109237195978494
PYFKHALTL	9	Unmodified	_PYFKHALTL_					0	0	0			REV__nc|ENSG00000160185|P57075-3|UBASH3A	REV__nc|ENSG00000160185|P57075-3|UBASH3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3087158203125	2	545.30821	1088.60187	0.63411	0.00034579	0.1311	7.1488E-05	0.76521	0.00041727	545.3081660616335	39.911	1.1908	40.01	39.236	40.427	0.099407					106	42	3	0	0	0	0.25989	1	8383	8383		14.838	14.838	1	662410	+		34778	16883	20400	20401	42124	42124					0.061109237195978494
PYFLKWYLF	9	Unmodified	_PYFLKWYLF_					0	0	0			REV__nc|ENSG00000292277|Q9UJ98-3|STAG3	REV__nc|ENSG00000292277|Q9UJ98-3|STAG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.28363037109375	3	426.230349	1275.66922	0.066426	2.8313E-05	2.0093	0.00085643	2.0757	0.00088474	426.2313344108168	85.667	0.89351	85.751	85.159	86.053	0.084251					53	33	2	0	0	0	0.259	1	22392	22392		5.2969	2.6656	1	164030	+		34779	13684	20401	20402	42125	42125					0.0424095393054813
PYFLRKFF	8	Unmodified	_PYFLRKFF_					0	0	0		ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	ENSG00000169777|ENST00000382492|TAS2R1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.3092651367188	2	559.313295	1116.61204	0.55357	0.00030962	-3.8621	-0.0021601	-3.3085	-0.0018505	559.3095763718592	36.905	1.199	36.998	36.536	37.735	0.093018					99	43	4	0	0	0	0.42446	1	7606	7606		14.582	0.96682	1	572990			34780	6387	20402	20403	42126	42126					0.058395314448489444
PYFNAPVYL	9	Unmodified	_PYFNAPVYL_					0	0	0		nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2793579101562	2	542.279118	1082.54368	0.68288	0.00037031	-0.58738	-0.00031852	0.095506	5.1791E-05	542.278609744874	77.116	2.9887	77.116	76.754	79.742	0					291	115	4	0	0	0	0.0030686	5	19868	19824;19868;19916;19966;20015		101.72	69.605	1	9956400			34781	2257	20403	20404	42127;42128;42129;42130;42131	42128					0.0057124207430661045
PYFNAPVYL	9	Unmodified	_PYFNAPVYL_					0	0	0		nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.279296875	2	542.279118	1082.54368	0.65965	0.00035771	-0.5198	-0.00028188	0.13985	7.5839E-05	542.2786470066136	77.057	3.9354	77.113	76.425	80.36	0.05542					294	150	4	0	0	0	0.0016131	6	19862	19817;19862;19905;19953;20003;20056		114.94	78.817	1	9642900			34782	2257	20403	20404	42132;42133;42134;42135;42136;42137	42133					0.0057124207430661045
PYFPPPYQP	9	Unmodified	_PYFPPPYQP_					0	0	0		ENSG00000008196|ENST00000393655|TFAP2B;nc|ENSG00000008196|Q92481-2|TFAP2B;ENST00000474952.5_1_6:10406972-10411829:-|nuORF;ENST00000464323.1_1_6:10410019-10419770:-|nuORF;nc|ENSG00000137203|P05549-2|TFAP2A;nc|ENSG00000137203|P05549-5|TFAP2A;nc|ENSG00000137203|P05549-6|TFAP2A;nc|ENSG00000137203|P05549|TFAP2A;ENSG00000137203|ENST00000379613|TFAP2A	ENSG00000008196|ENST00000393655|TFAP2B	ENSG00000008196|ENST00000393655|TFAP2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8300170898438	2	553.271293	1104.52803	0.44569	0.00024659	-1.2095	-0.00066916	-0.76377	-0.00042257	553.2706540731214	77.034	0.7254	77.09	76.785	77.51	0.05542					53	25	3	0	0	0	0.24311	1	19909	19909		16.942	0	1	280200			34783	389	20404	20405	42138	42138					-0.020050444427170078
PYFPPPYQP	9	Unmodified	_PYFPPPYQP_					0	0	0		ENSG00000008196|ENST00000393655|TFAP2B;nc|ENSG00000008196|Q92481-2|TFAP2B;ENST00000474952.5_1_6:10406972-10411829:-|nuORF;ENST00000464323.1_1_6:10410019-10419770:-|nuORF;nc|ENSG00000137203|P05549-2|TFAP2A;nc|ENSG00000137203|P05549-5|TFAP2A;nc|ENSG00000137203|P05549-6|TFAP2A;nc|ENSG00000137203|P05549|TFAP2A;ENSG00000137203|ENST00000379613|TFAP2A	ENSG00000008196|ENST00000393655|TFAP2B	ENSG00000008196|ENST00000393655|TFAP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2583618164062	2	553.271293	1104.52803	0.63116	0.0003492	-1.3554	-0.0007499	-0.72423	-0.0004007	553.2706540489328	77.14	0.65236	77.109	76.804	77.456	-0.031334					47	23	3	0	0	0	0.23775	1	19889	19889		18.135	0	1	412640			34784	389	20404	20405	42139	42139					-0.020050444427170078
PYFSWLLF	8	Unmodified	_PYFSWLLF_					0	0	0		ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.769287109375	2	536.778754	1071.54295	0.57546	0.00030889	-1.1458	-0.00061507	-0.57039	-0.00030617	536.7789088781341	39.187	0.66902	39.286	38.953	39.622	0.099407					56	23	4	0	0	0	0.33618	1	8330	8330		17.087	17.087	1	762680			34785	11380	20405	20406	42140	42140					0.010044474252708824
PYGNIQSRL	9	Unmodified	_PYGNIQSRL_					0	0	0		ENSG00000143641|ENST00000366672|GALNT2;ENST00000492568.1_1_1:230398346-230398752:+|nuORF	ENSG00000143641|ENST00000366672|GALNT2	ENSG00000143641|ENST00000366672|GALNT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2835693359375	2	524.282723	1046.55089	0.40407	0.00021184	0.12072	6.3289E-05	0.52478	0.00027513	524.2826423140357	38.842	0.32846	38.935	38.675	39.003	0.09267					26	11	3	0	0	0	0.001957	1	8131	8131		110.55	66.694	1	1063900			34786	4537	20406	20407	42141	42141					0.02947974674748366
PYGNIQSRL	9	Unmodified	_PYGNIQSRL_					0	0	0		ENSG00000143641|ENST00000366672|GALNT2;ENST00000492568.1_1_1:230398346-230398752:+|nuORF	ENSG00000143641|ENST00000366672|GALNT2	ENSG00000143641|ENST00000366672|GALNT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2823486328125	2	524.282723	1046.55089	0.67758	0.00035524	-0.047033	-2.4658E-05	0.63055	0.00033059	524.2827237325487	38.839	0.31094	38.939	38.735	39.046	0.099407					22	10	3	0	0	0	0.0032746	3	8140	8125;8131;8140		100.09	56.409	1	837810			34787	4537	20406	20407	42142;42143;42144	42144					0.02947974674748366
PYGPWLCLL	9	Unmodified	_PYGPWLCLL_					0	0	0		ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A;ENST00000540276.1_1_11:60692015-60695132:+|nuORF;nc|ENSG00000006118|Q24JP5-4|TMEM132A	ENSG00000006118|ENST00000453848|TMEM132A	ENSG00000006118|ENST00000453848|TMEM132A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.7666625976562	2	531.278063	1060.54157	0.66564	0.00035364	1.8806	0.00099912	2.5462	0.0013528	531.2802480050233	48.523	0.25076	48.523	48.331	48.582	0					12	8	2	0	0	0	0.22431	1	11123	11123		20.871	1.4322	1	163430			34788	354	20407	20408	42145	42145					0.01372490064863996
PYGRALARR	9	Unmodified	_PYGRALARR_					0	0	0			REV__ENST00000569811.1_1_15:34858581-34875052:-|nuORF	REV__ENST00000569811.1_1_15:34858581-34875052:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3115234375	2	530.312149	1058.60975	0.5854	0.00031045	-1.3188	-0.0006994	-0.73344	-0.00038895	530.311382786421	82.212	0.5648	82.212	82.024	82.589	0					30	20	2	0	0	0	0.32415	1	21516	21516		5.2307	0	1	196570	+		34789	22405	20408	20409	42146	42146					0.08278495759714133
PYGYLNDVF	9	Unmodified	_PYGYLNDVF_					0	0	0			REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1;REV__NLGN4X|p.R765Lfs*14|1|0.04|ENSG00000146938|chrX:5892979-5892980|-/AACATAGAAGA|frameshift_variant	REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2694702148438	2	544.258382	1086.50221	0.49873	0.00027144	1.5115	0.00082262	2.0102	0.0010941	544.2589677076924	62.252	0.63939	62.252	61.971	62.611	0					39	23	3	0	0	0	0.23775	1	15431	15431		18.135	0	1	368940	+		34790	17538;16365	20409	20410	42147	42147					-0.037579386849984076
PYHPHPHVF	9	Unmodified	_PYHPHPHVF_					0	0	0		ENST00000557261.1_1_14:89816083-89817451:-|nuORF;ENSG00000053254|ENST00000557258|FOXN3;nc|ENSG00000053254|O00409|FOXN3	ENST00000557261.1_1_14:89816083-89817451:-|nuORF	ENST00000557261.1_1_14:89816083-89817451:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7808227539062	2	565.780151	1129.54575	0.14621	8.2723E-05	1.2513	0.00070795	1.3975	0.00079068	565.7807707034418	25.977	0.35984	25.955	25.774	26.133	-0.022238					15	12	2	0	0	0	0.2616	1	4211	4211		14.582	10.252	1	108340			34791	676	20410	20411	42148	42148					-0.013842843972042829
PYHPHPHVF	9	Unmodified	_PYHPHPHVF_					0	0	0		ENST00000557261.1_1_14:89816083-89817451:-|nuORF;ENSG00000053254|ENST00000557258|FOXN3;nc|ENSG00000053254|O00409|FOXN3	ENST00000557261.1_1_14:89816083-89817451:-|nuORF	ENST00000557261.1_1_14:89816083-89817451:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	565.780151	1129.54575	0.1021	5.7765E-05	-0.091581	-5.1815E-05	0.010516	5.9497E-06	565.780119682051	25.77	0.19963	25.77	25.623	25.823	0	-0.092472	-0.00045519	NaN	14.582	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94504			34792	676	20410	20411							-0.013842843972042829
PYHTLNLLE	9	Unmodified	_PYHTLNLLE_					0	0	0		nc|ENSG00000174600|Q99788-2|CMKLR1;ENSG00000174600|ENST00000550402|CMKLR1	nc|ENSG00000174600|Q99788-2|CMKLR1	nc|ENSG00000174600|Q99788-2|CMKLR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3165283203125	2	550.292756	1098.57096	0.80973	0.00044559	-3.1492	-0.001733	-2.3394	-0.0012874	550.2910492269117	33.916	0.75378	33.983	33.76	34.513	0.06636					30	26	2	0	0	0	0.21137	1	6793	6793		24.674	5.2349	1	100000			34793	6805	20411	20412	42149	42149					0.025617256147143053
PYIASSPRE	9	Unmodified	_PYIASSPRE_					0	0	0			REV__nc|ENSG00000116584|Q92974-3|ARHGEF2	REV__nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2789001464844	2	510.261456	1018.50836	0.18268	9.3213E-05	1.145	0.00058423	1.3276	0.00067744	510.2617936924464	19.775	0.86077	19.775	19.125	19.986	0					38	30	2	0	0	0	0.29176	1	2281	2281		10.074	0	1	33119	+		34794	14927	20412	20413	42150	42150					-0.00015420453473780071
PYIELLLQ	8	Unmodified	_PYIELLLQ_					0	0	0			REV__ENST00000415279.1_1_1:106434930-106435587:+|nuORF	REV__ENST00000415279.1_1_1:106434930-106435587:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7691650390625	2	494.789318	987.564084	0.20337	0.00010062	1.1128	0.00055059	1.3161	0.00065121	494.7898361241575	23.377	0.86338	23.377	22.936	23.8	0					54	29	2	0	0	0	0.3366	1	3368	3368		18.135	5.6034	1	183320	+		34795	20808	20413	20414	42151	42151					0.06980412734139918
PYIIAGLHF	9	Unmodified	_PYIIAGLHF_					0	0	0		nc|ENSG00000185813|Q99447-2|PCYT2;nc|ENSG00000185813|Q99447-4|PCYT2;ENSG00000185813|ENST00000538936|PCYT2;nc|ENSG00000185813|Q99447-3|PCYT2;ENST00000574155.1_1_17:79864303-79864642:-|nuORF	nc|ENSG00000185813|Q99447-2|PCYT2	nc|ENSG00000185813|Q99447-2|PCYT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2633056640625	2	515.789653	1029.56475	0.26546	0.00013692	0.47392	0.00024444	0.73938	0.00038136	515.7897628062072	71.441	1.2236	71.497	71.238	72.462	0.056572					85	44	3	0	0	0	0.22431	1	18433	18433		20.871	1.4322	1	2821700			34796	7559	20414	20415	42152	42152					0.051152521738458745
PYIKPGLSL	9	Unmodified	_PYIKPGLSL_					0	0	0		nc|ENSG00000167920|Q8N816|KRT10-AS1	nc|ENSG00000167920|Q8N816|KRT10-AS1	nc|ENSG00000167920|Q8N816|KRT10-AS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.3075866699219	2	494.29731	986.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.22	1	66.206	65.706	66.706	-0.013588								0	0	0	0.21357	1	16551	16551		18.135	1.1927	1				34797	12824	20415	20416	42153	42153					0.08624118971056305
PYILIMLGL	9	Unmodified	_PYILIMLGL_					0	0	0		ENST00000566157.5_1_16:56511116-56511164:+|nuORF	ENST00000566157.5_1_16:56511116-56511164:+|nuORF	ENST00000566157.5_1_16:56511116-56511164:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8117065429688	2	516.811739	1031.60893	0.38503	0.00019899	-0.15666	-8.0965E-05	0.22837	0.00011802	516.8116633203778	82.014	0.94537	82.014	81.675	82.62	0					49	35	2	0	0	0	0.29662	1	21406	21406		9.3474	0	1	316270			34798	11975	20416	20417	42154	42154					0.09438520275830342
PYILSTGDSF	10	Unmodified	_PYILSTGDSF_					0	0	0		ENSG00000145241|ENST00000273853|CENPC;ENST00000515140.1_3_4:68340585-68358532:-|nuORF;ENST00000513216.5_3_4:68338325-68358532:-|nuORF	ENSG00000145241|ENST00000273853|CENPC	ENSG00000145241|ENST00000273853|CENPC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2799072265625	2	550.268947	1098.52334	0.33465	0.00018415	0.72517	0.00039904	1.0598	0.00058319	550.2688942352278	38.982	1.6059	39.075	38.648	40.254	0.09267					122	57	4	0	0	0	0.2593	2	8459	8459;8510		25.399	2.663	1	2491300			34799	4638	20417	20418	42155;42156	42155					-0.021979733761327225
PYILTTPGF	9	Unmodified	_PYILTTPGF_					0	0	0		CON__P01030;CON__ENSEMBL:ENSBTAP00000007350	CON__P01030	CON__P01030	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7616271972656	2	504.773668	1007.53278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.87	1	56.85	56.35	57.35	-0.019081								0	0	0	0.19325	1	13679	13679		24.674	1.5255	1			+	34800	207	20418	20419	42157	42157					0.029318397000452023
PYISNIYLI	9	Unmodified	_PYISNIYLI_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.308349609375	2	548.307875	1094.6012	0.49169	0.0002696	0.034183	1.8743E-05	0.52588	0.00028834	548.3078943453046	82.071	2.6005	82.071	81.586	84.186	0					295	100	5	0	0	0	4.0037E-07	7	21408	21346;21359;21408;21452;21495;21542;21647		164.52	82.902	1	16962000			34801	1220	20419	20420	42158;42159;42160;42161;42162;42163;42164	42160					0.05768084279884533
PYISNIYLI	9	Unmodified	_PYISNIYLI_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.30810546875	2	548.307875	1094.6012	0.42168	0.00023121	0.058916	3.2304E-05	0.48059	0.00026351	548.3079120047651	82.025	2.7322	82.093	81.65	84.382	0.068993					325	110	5	0	0	0	2.8439E-05	5	21408	21317;21365;21408;21455;21498		152.41	85.068	1	16639000			34802	1220	20419	20420	42165;42166;42167;42168;42169	42167					0.05768084279884533
PYISNIYLI	9	Unmodified	_PYISNIYLI_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3084106445312	2	548.307875	1094.6012	0.57053	0.00031282	0.00064981	3.563E-07	0.57118	0.00031318	548.3078822551057	82.121	2.2046	82.097	81.743	83.947	-0.02404					290	90	4	0	0	0	3.327E-09	5	21379	21379;21424;21467;21515;21560		180.01	87.188	1	15913000			34803	1220	20419	20420	42170;42171;42172;42173;42174	42170					0.05768084279884533
PYISQAYVI	9	Unmodified	_PYISQAYVI_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2847290039062	2	527.2844	1052.55425	0.74957	0.00039524	-0.71139	-0.00037511	0.03818	2.0132E-05	527.2838819016711	66.031	0.62782	66.031	65.768	66.396	0					42	22	2	0	0	0	0.058995	1	16499	16499		49.554	26.818	1	716320			34804	2078	20420	20421	42175	42175					0.030072247287534992
PYISQAYVI	9	Unmodified	_PYISQAYVI_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2846069335938	2	527.2844	1052.55425	0.7033	0.00037084	-0.21299	-0.00011231	0.49031	0.00025853	527.2839094004319	65.891	0.74255	65.98	65.677	66.42	0.088882					60	26	3	0	0	0	0.11201	1	16444	16444		36.506	19.393	1	695370			34805	2078	20420	20421	42176	42176					0.030072247287534992
PYISQAYVI	9	Unmodified	_PYISQAYVI_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2847290039062	2	527.2844	1052.55425	0.5978	0.00031521	-0.21175	-0.00011165	0.38605	0.00020356	527.283874757578	65.988	0.63174	65.974	65.748	66.379	-0.013588					46	22	3	0	0	0	0.14646	1	16487	16487		43.772	21.036	1	624830			34806	2078	20420	20421	42177	42177					0.030072247287534992
PYKAGLSL	8	Unmodified	_PYKAGLSL_					0	0	0		nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-5|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8873596191406	2	424.747453	847.480354	0.031428	1.3349E-05	0.23909	0.00010155	0.27051	0.0001149	424.74744347001683	30.323	0.61922	30.323	29.999	30.619	0					32	21	2	0	0	0	0.31375	1	5494	5494		26.341	0	1	151090			34807	7631	20421	20422	42178	42178					0.05051301357093507
PYKAGLSL	8	Unmodified	_PYKAGLSL_					0	0	0		nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-5|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.887451171875	2	424.747453	847.480354	-0.34015	-0.00014448	0.72601	0.00030837	0.38586	0.00016389	424.7476056747787	30.28	0.47838	30.307	30.052	30.53	0.027157					28	16	2	0	0	0	0.33245	1	5523	5523		19.439	0	1	119550			34808	7631	20421	20422	42179	42179					0.05051301357093507
PYKFMNRY	8	Unmodified	_PYKFMNRY_					0	0	0		ENSG00000171451|ENST00000310045|DSEL	ENSG00000171451|ENST00000310045|DSEL	ENSG00000171451|ENST00000310045|DSEL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.7758178710938	2	559.776219	1117.53789	0.35727	0.00019999	-0.83959	-0.00046998	-0.48232	-0.00026999	559.7756282001707	21.195	0.59592	21.142	20.861	21.457	-0.05291					53	20	3	0	0	0	0.45942	1	2796	2796		2.5775	0.92486	1	288130			34809	6542	20422	20423	42180	42180					-0.016181797089984684
PYKFTERE	8	Unmodified	_PYKFTERE_					0	0	0			REV__ENSG00000164944|ENST00000297591|VIRMA;REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	REV__ENSG00000164944|ENST00000297591|VIRMA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.2529907226562	2	535.269281	1068.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.189	1	36.275	35.775	36.775	0.08625								0	0	0	0.27792	1	7320	7320		32.305	4.6767	1		+		34810	17193;23069	20423	20424	42181	42181					-0.007511339364327796
PYKGKRPLK	9	Unmodified	_PYKGKRPLK_					0	0	0		ENSG00000167202|ENST00000300584|TBC1D2B;nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	ENSG00000167202|ENST00000300584|TBC1D2B	ENSG00000167202|ENST00000300584|TBC1D2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.288330078125	2	543.842751	1085.67095	0.53805	0.00029262	-1.6953	-0.00092197	-1.1572	-0.00062936	543.8423601922178	49.575	0.30067	49.62	49.394	49.695	0.044891					13	10	2	0	0	0	0.25066	1	11422	11422		7.2892	0	1	104810			34811	6158	20424	20425	42182	42182					0.13154007739149165
PYKQLPIY	8	Unmodified	_PYKQLPIY_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYO5C|p.T1715Hfs*13|1|0.04|ENSG00000128833|chr15:52193988-52193988|T/-|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;nc|ENSG00000128833|Q9NQX4-2|MYO5C	nc|ENSG00000105357|Q7Z406|MYH14;MYO5C|p.T1715Hfs*13|1|0.04|ENSG00000128833|chr15:52193988-52193988|T/-|frameshift_variant	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.271484375	2	511.289485	1020.56442	0.2986	0.00015267	-0.43773	-0.00022381	-0.13913	-7.1136E-05	511.28913618491225	80.409	0.33243	80.409	80.267	80.599	0					20	12	2	0	0	0	0.34046	1	20888	20888		14.582	0	1	123770			34812	1970;3394	20425	20426	42183	42183					0.0549583245398253
PYKQLPIY	8	Unmodified	_PYKQLPIY_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYO5C|p.T1715Hfs*13|1|0.04|ENSG00000128833|chr15:52193988-52193988|T/-|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;nc|ENSG00000128833|Q9NQX4-2|MYO5C	nc|ENSG00000105357|Q7Z406|MYH14;MYO5C|p.T1715Hfs*13|1|0.04|ENSG00000128833|chr15:52193988-52193988|T/-|frameshift_variant	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.271240234375	2	511.289485	1020.56442	0.16945	8.664E-05	-0.28619	-0.00014633	-0.11674	-5.9688E-05	511.2892781907078	80.361	0.38955	80.426	80.185	80.575	0.065094					18	14	2	0	0	0	0.32778	1	20899	20899		20.871	6.2895	1	149310			34813	1970;3394	20425	20426	42184	42184					0.0549583245398253
PYKQLPIY	8	Unmodified	_PYKQLPIY_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYO5C|p.T1715Hfs*13|1|0.04|ENSG00000128833|chr15:52193988-52193988|T/-|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;nc|ENSG00000128833|Q9NQX4-2|MYO5C	nc|ENSG00000105357|Q7Z406|MYH14;MYO5C|p.T1715Hfs*13|1|0.04|ENSG00000128833|chr15:52193988-52193988|T/-|frameshift_variant	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.27099609375	2	511.289485	1020.56442	0.2465	0.00012603	-0.59698	-0.00030523	-0.35048	-0.0001792	511.2890969188533	80.467	0.42432	80.44	80.173	80.597	-0.026817					18	14	2	0	0	0	0.32778	1	20930	20930		20.871	0	1	169610			34814	1970;3394	20425	20426	42185	42185					0.0549583245398253
PYKRFIDR	8	Unmodified	_PYKRFIDR_					0	0	0			REV__nc|ENSG00000006125|P63010-3|AP2B1	REV__nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7933349609375	2	547.808908	1093.60326	0.2636	0.0001444	0.13739	7.5266E-05	0.401	0.00021967	547.8090009642918	39.909	1.1448	39.909	39.569	40.714	0					87	41	4	0	0	0	0.42758	2	8429	8429;8479		13.508	5.5977	1	1240300	+		34815	13355	20426	20427	42186;42187	42186					0.060205578083468936
PYKRFIDR	8	Unmodified	_PYKRFIDR_					0	0	0			REV__nc|ENSG00000006125|P63010-3|AP2B1	REV__nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.793212890625	2	547.808908	1093.60326	0.50677	0.00027761	-0.111	-6.0805E-05	0.39577	0.00021681	547.8088760291421	39.683	1.0241	39.783	39.481	40.505	0.099407					80	36	4	0	0	0	0.42758	1	8370	8370		13.508	4.1248	1	1751600	+		34816	13355	20426	20427	42188	42188					0.060205578083468936
PYKVTQDEL	9	Unmodified	_PYKVTQDEL_					0	0	0		NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant;ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;NCL|p.N399S|1|0.38|ENSG00000115053|chr2:231458359-231458359|T/C|missense_variant	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.7826538085938	2	546.782222	1091.54989	0.77452	0.00042349	0.76455	0.00041804	1.5391	0.00084154	546.7821915265849	37.094	0.68989	37.094	36.787	37.477	0					85	24	4	0	0	0	3.4202E-05	2	7563	7563;7612		151.48	71.884	1	2164900			34817	2603	20427	20428	42189;42190	42189					0.007777155151643456
PYKVTQDEL	9	Unmodified	_PYKVTQDEL_					0	0	0		NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant;ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;NCL|p.N399S|1|0.38|ENSG00000115053|chr2:231458359-231458359|T/C|missense_variant	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.78271484375	2	546.782222	1091.54989	0.64115	0.00035057	1.1275	0.0006165	1.7687	0.00096707	546.7821864777476	36.926	0.65162	37.014	36.706	37.358	0.08741					87	23	5	0	0	0	0.00010651	2	7518	7518;7565		139.78	75.821	1	2078200			34818	2603	20427	20428	42191;42192	42191					0.007777155151643456
PYKVTQDEL	9	Unmodified	_PYKVTQDEL_					0	0	0		NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant;ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;NCL|p.N399S|1|0.38|ENSG00000115053|chr2:231458359-231458359|T/C|missense_variant	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7828369140625	2	546.782222	1091.54989	0.79952	0.00043717	0.86979	0.00047559	1.6693	0.00091275	546.7821779025444	36.965	1.1809	37.058	36.713	37.894	0.093018					120	43	5	0	0	0	4.216E-07	2	7518	7518;7562		163.69	95.849	1	2443000			34819	2603	20427	20428	42193;42194	42193					0.007777155151643456
PYKWLKELCS	10	Unmodified	_PYKWLKELCS_					0	0	0			REV__ENST00000264220.6_1_4:57267056-57268281:-|nuORF	REV__ENST00000264220.6_1_4:57267056-57268281:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2677001953125	3	422.889886	1265.64783	0.14778	6.2493E-05	-2.9808	-0.0012605	-2.833	-0.001198	423.22324100677946	29.44	0.16574	29.44	29.355	29.521	0					8	5	2	0	0	0	0.32051	1	5267	5267		3.8763	2.1341	1	61057	+		34820	19635	20428	20429	42195	42195					0.025632008395405137
PYLAAHRRI	9	Unmodified	_PYLAAHRRI_					0	0	0		nc|ENSG00000214022|Q9BWE0|REPIN1;ENSG00000214022|ENST00000489432|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7823486328125	2	548.82235	1095.63015	0.1671	9.1707E-05	2.909	0.0015965	3.0761	0.0016883	548.8236794627513	13.156	0.72852	13.057	12.46	13.189	-0.099291					25	24	2	0	0	0	0.26251	1	168	168		0.6015	0.076735	1	60573			34821	8373	20429	20430	42196	42196					0.0861566641956415
PYLDKFFAL	9	Unmodified	_PYLDKFFAL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.E1876Lfs*12|1|0.03|ENSG00000116641|chr1:62476133-62476134|-/GTGCAATTTTGTTTGAGAAAGA|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2266235351562	2	557.302593	1112.59063	0.27624	0.00015395	0.22196	0.0001237	0.4982	0.00027765	557.3025766835241	76.584	0.64664	76.584	76.31	76.957	0					46	23	3	0	0	0	0.12056	1	19731	19731		51.415	17.014	1	274260			34822	2734	20430	20431	42197	42197					0.03884101625476433
PYLDKFFAL	9	Unmodified	_PYLDKFFAL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.E1876Lfs*12|1|0.03|ENSG00000116641|chr1:62476133-62476134|-/GTGCAATTTTGTTTGAGAAAGA|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2266845703125	2	557.302593	1112.59063	0.15045	8.3846E-05	-0.010554	-5.882E-06	0.1399	7.7964E-05	557.3025855934966	76.541	0.65981	76.594	76.32	76.98	0.053413					43	23	2	0	0	0	0.089483	1	19699	19699		59.368	28.732	1	214870			34823	2734	20430	20431	42198	42198					0.03884101625476433
PYLDKFFAL	9	Unmodified	_PYLDKFFAL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.E1876Lfs*12|1|0.03|ENSG00000116641|chr1:62476133-62476134|-/GTGCAATTTTGTTTGAGAAAGA|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2271118164062	2	557.302593	1112.59063	0.40863	0.00022773	-0.084479	-4.7081E-05	0.32415	0.00018065	557.3024772059034	76.562	0.8097	76.531	76.29	77.1	-0.031487					50	29	3	0	0	0	0.089483	1	19730	19730		59.368	30.287	1	277510			34824	2734	20430	20431	42199	42199					0.03884101625476433
PYLDKFFTL	9	Unmodified	_PYLDKFFTL_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3082885742188	2	572.307875	1142.6012	0.23225	0.00013292	0.17768	0.00010169	0.40993	0.00023461	572.3079498231518	76.6	0.96968	76.6	76.338	77.308	0					69	35	4	0	0	0	0.12329	1	19697	19697		49.554	13.427	1	860940			34825	3453	20431	20432	42200	42200					0.0356008427991128
PYLDKFFTL	9	Unmodified	_PYLDKFFTL_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.30810546875	2	572.307875	1142.6012	0.18018	0.00010312	0.23082	0.0001321	0.411	0.00023522	572.3079576707988	76.564	0.8338	76.618	76.345	77.178	0.053421					59	29	3	0	0	0	0.00047355	1	19687	19687		136.39	58.243	1	1014200			34826	3453	20431	20432	42201	42201					0.0356008427991128
PYLDKFFTL	9	Unmodified	_PYLDKFFTL_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.30810546875	2	572.307875	1142.6012	0.41963	0.00024016	0.20726	0.00011862	0.6269	0.00035878	572.307838731302	76.65	0.9164	76.618	76.346	77.262	-0.031479					64	33	4	0	0	0	0.0091837	1	19680	19680		80.676	40.726	1	1093500			34827	3453	20431	20432	42202	42202					0.0356008427991128
PYLDQINVI	9	Unmodified	_PYLDQINVI_					0	0	0		ENSG00000196072|ENST00000370372|BLOC1S2;nc|ENSG00000196072|Q6QNY1-2|BLOC1S2;ENST00000428431.1_1_X:63946685-63946751:-|nuORF	ENSG00000196072|ENST00000370372|BLOC1S2	ENSG00000196072|ENST00000370372|BLOC1S2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.3185424804688	2	537.795132	1073.57571	0.30359	0.00016327	-1.2777	-0.00068715	-0.97413	-0.00052388	538.2953883325488	73.184	0.98412	73.238	72.765	73.749	0.053841					51	35	2	0	0	0	0.22143	1	18691	18691		19.362	1.2156	1	252640			34828	7818	20432	20433	42203	42203					0.0418660975747116
PYLDSFYEY	9	Unmodified	_PYLDSFYEY_					0	0	0		ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.7612915039062	2	598.760955	1195.50736	0.33444	0.00020025	0.31875	0.00019085	0.65319	0.0003911	598.7609094285162	73.426	1.5355	73.426	72.75	74.286	0					124	53	5	0	0	0	0.00077644	3	18744	18729;18744;18796		125.62	63.59	1	2008200			34829	8511	20433	20434	42204;42205;42206	42205					-0.08257679613029723
PYLDSFYEY	9	Unmodified	_PYLDSFYEY_					0	0	0		ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.7611083984375	2	598.760955	1195.50736	0.38053	0.00022785	-0.025255	-1.5121E-05	0.35528	0.00021273	598.7608726914273	73.393	1.1708	73.447	73.037	74.208	0.053833					130	41	5	0	0	0	0.00077644	2	18761	18714;18761		125.62	65.235	1	1895700			34830	8511	20433	20434	42207;42208	42208					-0.08257679613029723
PYLDSFYEY	9	Unmodified	_PYLDSFYEY_					0	0	0		ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.7611083984375	2	598.760955	1195.50736	0.37596	0.00022511	0.05462	3.2704E-05	0.43058	0.00025781	598.7608474061091	73.459	1.4605	73.43	73.042	74.503	-0.029305					148	52	5	0	0	0	0.00077644	4	18790	18714;18728;18744;18790		125.62	62.062	1	2038600			34831	8511	20433	20434	42209;42210;42211;42212	42212					-0.08257679613029723
PYLDSFYEY	9	Unmodified	_PYLDSFYEY_					0	0	0		ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.2767333984375	2	598.760955	1195.50736	0.46116	0.00027612	1.8154	0.001087	2.2766	0.0013631	598.7618564525075	75.604	0.70049	75.573	75.262	75.962	-0.031487					41	25	2	0	0	0	0.25706	1	19333	19333		6.7232	1.9672	1	523930			34832	8511	20433	20434	42213	42213					-0.08257679613029723
PYLEETERPI	10	Unmodified	_PYLEETERPI_					0	0	0		ENST00000256935.12_1_5:169509883-169510066:+|nuORF	ENST00000256935.12_1_5:169509883-169510066:+|nuORF	ENST00000256935.12_1_5:169509883-169510066:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.907958984375	3	416.215316	1245.62412	0.77915	0.00032429	-1.6371	-0.00068137	-0.8579	-0.00035707	416.54865446446735	33.75	0.75036	33.817	33.566	34.317	0.06636					69	26	3	0	0	0	0.31942	1	6512	6512		3.5871	3.5871	1	391670			34833	8933	20434	20435	42214	42214					0.011130586067110926
PYLFHVVTF	9	Unmodified	_PYLFHVVTF_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.802978515625	2	561.80276	1121.59097	0.3183	0.00017882	0.32581	0.00018304	0.64412	0.00036187	561.8028886929695	73.185	1.822	73.156	72.738	74.56	-0.029305					203	65	5	0	0	0	4.2225E-11	10	18640	18640;18683;18724;18766;18807;18815;18865;18926;18980;19076		189.49	170.4	1	7478100			34834	7899	20435	20436	42215;42216;42217;42218;42219;42220;42221;42222;42223;42224	42215					0.035035213453284086
PYLFHVVTF	9	Unmodified	_PYLFHVVTF_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2542724609375	2	561.80276	1121.59097	0.48053	0.00026996	-1.502	-0.00084381	-1.0214	-0.00057385	561.8019328607277	74.702	0.1976	74.67	74.557	74.755	-0.031487					9	6	2	0	0	0	0.089551	1	19140	19140		53.576	40.533	1	237570			34835	7899	20435	20436	42225	42225					0.035035213453284086
PYLFHVVTF	9	Unmodified	_PYLFHVVTF_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	561.80276	1121.59097	0.25348	0.0001424	0.37943	0.00021316	0.6329	0.00035557	561.8029086186742	73.169	1.876	73.169	72.855	74.731	0	0.011636	1.5743E-05	NaN	189.49	185	65	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7319500			34836	7899	20435	20436							0.035035213453284086
PYLFHVVTF	9	Unmodified	_PYLFHVVTF_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.80276	1121.59097	0.26643	0.00014968	0.39168	0.00022005	0.65811	0.00036973	561.8029001143925	73.093	2.1827	73.147	72.843	75.026	0.053833	-0.010016	2.9508E-05	NaN	189.49	207	77	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7173600			34837	7899	20435	20436							0.035035213453284086
PYLGQAPFL	9	Unmodified	_PYLGQAPFL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-6|SYNRG;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;SYNRG|p.N1241Kfs*12|1|0.22|ENSG00000275066|chr17:37520592-37520592|A/-|frameshift_variant;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.27398681640625	2	503.273835	1004.53312	0.45506	0.00022902	1.7428	0.00087709	2.1978	0.0011061	503.2737946447174	75.089	1.0742	75.089	74.46	75.534	0					101	38	4	0	0	0	0.031932	1	19301	19301		74.396	34.439	1	1115500			34838	8716	20436	20437	42226	42226					0.031032594199018604
PYLGQAPFL	9	Unmodified	_PYLGQAPFL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-6|SYNRG;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;SYNRG|p.N1241Kfs*12|1|0.22|ENSG00000275066|chr17:37520592-37520592|A/-|frameshift_variant;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.27398681640625	2	503.273835	1004.53312	0.35372	0.00017802	0.87173	0.00043872	1.2254	0.00061674	503.2738367899726	75.007	1.5476	75.059	74.612	76.16	0.052368					175	56	6	0	0	0	0.1659	1	19281	19281		36.044	7.5574	1	1166300			34839	8716	20436	20437	42227	42227					0.031032594199018604
PYLGQAPFL	9	Unmodified	_PYLGQAPFL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-6|SYNRG;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;SYNRG|p.N1241Kfs*12|1|0.22|ENSG00000275066|chr17:37520592-37520592|A/-|frameshift_variant;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2740478515625	2	503.273835	1004.53312	0.59178	0.00029783	1.7816	0.00089664	2.3734	0.0011945	503.2737721623356	75.167	0.79788	75.135	74.672	75.47	-0.031487					84	29	4	0	0	0	0.0040732	1	19293	19293		101.72	49.454	1	1144800			34840	8716	20436	20437	42228	42228					0.031032594199018604
PYLIKVQAL	9	Unmodified	_PYLIKVQAL_					0	0	0		nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.826416015625	2	522.826235	1043.63792	0.37258	0.0001948	0.22948	0.00011998	0.60206	0.00031477	522.8263144669909	59.258	0.98056	59.258	58.917	59.897	0					59	34	3	0	0	0	0.0037552	1	14408	14408		96.285	60.158	1	806150			34841	1397	20437	20438	42229	42229					0.11784380896460789
PYLIKVQAL	9	Unmodified	_PYLIKVQAL_					0	0	0		nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.826416015625	2	522.826235	1043.63792	0.41771	0.00021839	0.065607	3.4301E-05	0.48332	0.00025269	522.8262096864348	59.082	0.75417	59.173	58.792	59.547	0.091301					53	26	3	0	0	0	0.006189	1	14354	14354		85.272	39.251	1	892990			34842	1397	20437	20438	42230	42230					0.11784380896460789
PYLIKVQAL	9	Unmodified	_PYLIKVQAL_					0	0	0		nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.826235	1043.63792	0.57213	0.00029912	0.074232	3.8811E-05	0.64636	0.00033793	522.8262349726853	59.203	0.64878	59.188	58.917	59.566	-0.014271	-0.01805	-6.9698E-05	NaN	96.285	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	865070			34843	1397	20437	20438							0.11784380896460789
PYLLDLHL	8	Unmodified	_PYLLDLHL_					0	0	0		ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENSG00000123064|ENST00000306014|DDX54	ENSG00000123064|ENST00000306014|DDX54	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2640380859375	2	492.28166	982.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.329	1	59.329	58.829	59.829	0								0	0	0	0.26566	1	14438	14438		34.187	0	1				34844	3083	20438	20439	42231	42231					0.056795459369595847
PYLLDLHL	8	Unmodified	_PYLLDLHL_					0	0	0		ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENSG00000123064|ENST00000306014|DDX54	ENSG00000123064|ENST00000306014|DDX54	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2637023925781	2	492.28166	982.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.179	1	59.27	58.77	59.77	0.091301								0	0	0	0.26566	1	14388	14388		34.187	0	1				34845	3083	20438	20439	42232	42232					0.056795459369595847
PYLLHGKYV	9	Unmodified	_PYLLHGKYV_					0	0	0		ENST00000481464.5_1_1:19927449-19952892:+|nuORF;ENST00000486890.5_1_1:19927449-19950128:+|nuORF;ENSG00000173436|ENST00000322753|MICOS10;ENST00000498642.5_1_1:19923539-19952083:+|nuORF	ENST00000481464.5_1_1:19927449-19952892:+|nuORF	ENST00000481464.5_1_1:19927449-19952892:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.7891845703125	2	545.30821	1088.60187	0.63411	0.00034579	0.1311	7.1488E-05	0.76521	0.00041727	545.3081660616335	39.911	1.1908	40.01	39.236	40.427	0.099407					106	42	3	0	0	0	0.25526	1	8564	8564		7.9102	7.9102	1	662410			34846	6722	20439	20440	42233	42233					0.06110923719620587
PYLLYSVHM	9	Oxidation (M)	_PYLLYSVHM(Oxidation (M))_		PYLLYSVHM(1)		PYLLYSVHM(140)	0	0	1		ENSG00000164116|ENST00000506455|GUCY1A1;nc|ENSG00000164116|Q02108-2|GUCY1A1;ENST00000512983.5_1_4:156617950-156632415:+|nuORF	ENSG00000164116|ENST00000506455|GUCY1A1	ENSG00000164116|ENST00000506455|GUCY1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.29541015625	2	569.78371	1137.55287	0.36786	0.0002096	-0.28291	-0.0001612	0.084945	4.84E-05	569.7835729804178	53.831	0.72625	53.822	53.531	54.258	-0.0096054					36	26	2	0	0	0	0.00012008	1	12738	12738		137.59	101.46	1	1120200			34847	5793	20440	20441	42234	42234		686			-0.010407326316681065
PYLPGLLSL	9	Unmodified	_PYLPGLLSL_					0	0	0			REV__ENST00000318782.8_1_16:3022092-3022221:+|nuORF	REV__ENST00000318782.8_1_16:3022092-3022221:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7995910644531	2	486.791861	971.569169	0.42241	0.00020563	-3.7301	-0.0018158	-3.3077	-0.0016102	486.79176348244704	83.261	0.93842	83.334	82.956	83.894	0.073097					75	36	3	0	0	0	0.193	1	21811	21811		24.674	0.65332	1	212230	+		34848	19953	20441	20442	42235	42235					0.08224716596760118
PYLSEVLTF	9	Unmodified	_PYLSEVLTF_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7843017578125	2	534.784233	1067.55391	0.67028	0.00035845	-0.79194	-0.00042352	-0.12166	-6.5063E-05	534.7840185557274	84.086	0.54622	84.069	83.915	84.461	-0.016823					38	23	2	0	0	0	0.044952	1	22025	22025		54.774	2.5052	1	312210			34849	7871	20442	20443	42236	42236					0.02283805008892159
PYLTALLPS	9	Unmodified	_PYLTALLPS_					0	0	0		ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;nc|ENSG00000137413|Q7Z7C8-4|TAF8	ENSG00000137413|ENST00000372977|TAF8	ENSG00000137413|ENST00000372977|TAF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.79156494140625	2	487.781493	973.548434	0.27807	0.00013564	0.076777	3.745E-05	0.35484	0.00017309	487.7813842557898	71.297	0.47868	71.357	71.179	71.658	0.060783					22	16	2	0	0	0	0.25879	1	18058	18058		4.756	0	1	278780			34850	4045	20443	20444	42237	42237					0.06060126217107609
PYLTHNPGF	9	Unmodified	_PYLTHNPGF_					0	0	0			REV__ENSG00000142185|ENST00000397928|TRPM2	REV__ENSG00000142185|ENST00000397928|TRPM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2587890625	2	523.258717	1044.50288	0.45436	0.00023775	-0.12992	-6.7984E-05	0.32443	0.00016976	523.2586193029987	44.041	1.493	44.041	43.576	45.069	0					142	54	4	0	0	0	0.062246	1	9877	9877		48.346	14.243	1	5397000	+		34851	16105	20444	20445	42238	42238					-0.017590992453051513
PYLTHNPGF	9	Unmodified	_PYLTHNPGF_					0	0	0			REV__ENSG00000142185|ENST00000397928|TRPM2	REV__ENSG00000142185|ENST00000397928|TRPM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2584228515625	2	523.258717	1044.50288	0.50757	0.00026559	-0.18772	-9.8227E-05	0.31985	0.00016736	523.2585861637874	43.699	1.3542	43.783	43.297	44.652	0.083996					128	49	3	0	0	0	0.062246	1	9710	9710		48.346	8.3885	1	5603400	+		34852	16105	20444	20445	42239	42239					-0.017590992453051513
PYLTPDLPK	9	Unmodified	_PYLTPDLPK_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3;chr6:131726200-131737355|507|34.85|0.76|5.53|+|ENST00000358229|ENPP3,ENPP3	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.283447265625	2	522.292225	1042.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.675	1	54.675	54.175	55.175	0								0	0	0	0.21726	1	13001	13001		16.942	3.4344	1				34853	5119	20445	20446	42240	42240					0.05031511245783804
PYLVDTGMF	9	Oxidation (M)	_PYLVDTGM(Oxidation (M))F_		PYLVDTGM(1)F		PYLVDTGM(74)F	0	0	1		ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.332275390625	2	529.746793	1057.47903	0.72803	0.00038567	0.17127	9.0729E-05	0.8993	0.0004764	529.746615955515	66.029	0.85342	66.029	65.66	66.514	0					41	30	2	0	0	0	0.037153	1	16519	16519		74.423	44.198	1	251110			34854	2981	20446	20447	42241	42241		373			-0.047407007939682444
PYLVDTGMF	9	Oxidation (M)	_PYLVDTGM(Oxidation (M))F_					0	0	1		ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	529.746793	1057.47903	0.61116	0.00032376	-0.066376	-3.5162E-05	0.54479	0.0002886	529.7467064719842	66.036	0.9226	66.12	65.571	66.494	0.083832	0.023685	-0.00010557	NaN	109.63	47	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302700			34855	2981	20446	20447				373			-0.047407007939682444
PYLVDTGMF	9	Oxidation (M)	_PYLVDTGM(Oxidation (M))F_					0	0	1		ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	529.746793	1057.47903	0.57547	0.00030486	0.0059008	3.1259E-06	0.58137	0.00030798	529.7466591863239	66.153	0.84615	66.139	65.639	66.485	-0.013596	0.04311	-2.899E-05	NaN	109.63	49	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297820			34856	2981	20446	20447				373			-0.047407007939682444
PYLVGLFRE	9	Unmodified	_PYLVGLFRE_					0	0	0			REV__ENSG00000182162|ENST00000381297|P2RY8	REV__ENSG00000182162|ENST00000381297|P2RY8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.30615234375	2	547.305667	1092.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.03	1	112.01	111.51	112.51	-0.015625								0	0	0	0.2489	1	29144	29144		6.7232	0	1		+		34857	18179	20447	20448	42242	42242					0.054186198570278066
PYLVGLFRE	9	Unmodified	_PYLVGLFRE_					0	0	0			REV__ENSG00000182162|ENST00000381297|P2RY8	REV__ENSG00000182162|ENST00000381297|P2RY8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.2871704101562	2	547.305667	1092.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.24	1	112.25	111.75	112.75	0.0131								0	0	0	0.25631	1	29217	29217		4.3292	2.0265	1		+		34858	18179	20447	20448	42243	42243					0.054186198570278066
PYLVLLHTL	9	Unmodified	_PYLVLLHTL_					0	0	0		ENSG00000136802|ENST00000372600|LRRC8A;ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2742309570312	2	534.826235	1067.63792	0.29702	0.00015885	0.39861	0.00021319	0.69563	0.00037204	534.8264872305951	69.554	0.4761	69.554	69.339	69.815	0					27	16	2	0	0	0	0.24739	1	17662	17662		13.508	0	1	177480			34859	3997	20448	20449	42244	42244					0.10680380896474162
PYLWESLPL	9	Unmodified	_PYLWESLPL_					0	0	0			REV__ENST00000431239.5_1_1:146714466-146724362:+|nuORF	REV__ENST00000431239.5_1_1:146714466-146724362:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.3005981445312	2	559.30005	1116.58555	0.34594	0.00019348	-0.73763	-0.00041255	-0.39169	-0.00021907	559.299545223936	82.07	1.0085	82.07	81.699	82.708	0					53	37	2	0	0	0	0.072844	1	21392	21392		44.407	7.9008	1	748830	+		34860	20951	20449	20450	42245	42245					0.03191797762860915
PYLWESLPL	9	Unmodified	_PYLWESLPL_					0	0	0			REV__ENST00000431239.5_1_1:146714466-146724362:+|nuORF	REV__ENST00000431239.5_1_1:146714466-146724362:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.3001098632812	2	559.30005	1116.58555	0.3202	0.00017909	-0.78039	-0.00043647	-0.46019	-0.00025738	559.2996178590072	82.153	0.68289	82.129	81.831	82.513	-0.02404					44	26	2	0	0	0	0.11517	1	21364	21364		36.044	6.2036	1	519410	+		34861	20951	20449	20450	42246	42246					0.03191797762860915
PYLWESLPL	9	Unmodified	_PYLWESLPL_					0	0	0			REV__ENST00000431239.5_1_1:146714466-146724362:+|nuORF	REV__ENST00000431239.5_1_1:146714466-146724362:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	559.30005	1116.58555	0.34594	0.00019348	-0.73763	-0.00041255	-0.39169	-0.00021907	559.299545223936	82.07	1.0085	82.07	81.699	82.708	0	-0.011344	0.00011506	NaN	44.407	53	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	748830	+		34862	20951	20449	20450							0.03191797762860915
PYLWESLPL	9	Unmodified	_PYLWESLPL_					0	0	0			REV__ENST00000431239.5_1_1:146714466-146724362:+|nuORF	REV__ENST00000431239.5_1_1:146714466-146724362:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	559.30005	1116.58555	0.22146	0.00012386	-1.0699	-0.0005984	-0.84845	-0.00047454	559.2994547001109	81.975	0.78834	82.044	81.779	82.568	0.068993	-0.036964	-0.00025664	NaN	44.407	59	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	600740	+		34863	20951	20449	20450							0.03191797762860915
PYLWESLPL	9	Unmodified	_PYLWESLPL_					0	0	0			REV__ENST00000431239.5_1_1:146714466-146724362:+|nuORF	REV__ENST00000431239.5_1_1:146714466-146724362:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	559.30005	1116.58555	0.3202	0.00017909	-0.78039	-0.00043647	-0.46019	-0.00025738	559.2996178590072	82.153	0.68289	82.129	81.831	82.513	-0.02404	0.048307	6.7225E-05	NaN	44.407	44	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519410	+		34864	20951	20449	20450							0.03191797762860915
PYMAKFVVF	9	Oxidation (M)	_PYM(Oxidation (M))AKFVVF_		PYM(1)AKFVVF		PYM(93)AKFVVF	0	0	1		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3;ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.291748046875	2	559.291171	1116.56779	0.49556	0.00027716	0.6631	0.00037086	1.1587	0.00064803	559.2914672136832	60.913	1.3975	60.913	60.548	61.945	0					131	51	5	0	0	0	0.0041925	4	14923	14880;14923;14967;15019		92.822	53.126	1	50162000			34865	4644;4941	20450	20451	42247;42248;42249;42250	42248		584			0.014167592363264703
PYMAKFVVF	9	Oxidation (M)	_PYM(Oxidation (M))AKFVVF_		PYM(1)AKFVVF		PYM(51)AKFVVF	0	0	1		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3;ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2810668945312	2	559.291171	1116.56779	0.5514	0.00030839	0.46355	0.00025926	1.0149	0.00056765	559.2913731190353	64.283	0.31647	64.283	64.026	64.342	0					16	11	2	0	0	0	0.055495	2	15917	15917;15950		50.855	20.63	1	259090			34866	4644;4941	20450	20451	42251;42252	42251		584			0.014167592363264703
PYMAKFVVF	9	Oxidation (M)	_PYM(Oxidation (M))AKFVVF_		PYM(1)AKFVVF		PYM(93)AKFVVF	0	0	1		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3;ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2921142578125	2	559.291171	1116.56779	0.51584	0.00028851	0.68649	0.00038395	1.2023	0.00067245	559.291585938491	60.822	1.2112	60.919	60.579	61.79	0.096985					119	43	5	0	0	0	0.0041925	4	14866	14866;14908;14954;15001		92.822	48.415	1	48205000			34867	4644;4941	20450	20451	42253;42254;42255;42256	42253		584			0.014167592363264703
PYMAKFVVF	9	Oxidation (M)	_PYM(Oxidation (M))AKFVVF_		PYM(1)AKFVVF		PYM(42)AKFVVF	0	0	1		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3;ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.280029296875	2	559.291171	1116.56779	0.48771	0.00027277	0.13697	7.6604E-05	0.62467	0.00034937	559.2911029940598	66.088	1.8147	66.172	65.599	67.414	0.083832					145	65	3	0	0	0	0.079066	1	16863	16863		42.095	17.421	1	1073900			34868	4644;4941	20450	20451	42257	42257		584			0.014167592363264703
PYMAKFVVF	9	Oxidation (M)	_PYM(Oxidation (M))AKFVVF_		PYM(1)AKFVVF		PYM(51)AKFVVF	0	0	1		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3;ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2805786132812	2	559.291171	1116.56779	0.26417	0.00014775	0.80914	0.00045255	1.0733	0.00060029	559.2911367987184	66.237	1.7864	66.224	65.61	67.396	-0.013596					171	63	5	0	0	0	0.055495	1	16904	16904		50.855	18.738	1	1109100			34869	4644;4941	20450	20451	42258	42258		584			0.014167592363264703
PYMAKFVVF	9	Oxidation (M)	_PYM(Oxidation (M))AKFVVF_					0	0	1		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3;ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	559.291171	1116.56779	0.44865	0.00025093	0.76781	0.00042943	1.2165	0.00068035	559.2915988999106	60.944	1.406	60.935	60.572	61.978	-0.0094566	0.012865	5.7765E-05	NaN	92.822	128	51	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50604000			34870	4644;4941	20450	20451				584			0.014167592363264703
PYMANVYLI	9	Oxidation (M)	_PYM(Oxidation (M))ANVYLI_		PYM(1)ANVYLI		PYM(110)ANVYLI	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2787475585938	2	550.27826	1098.54197	0.40975	0.00022548	0.072083	3.9666E-05	0.48184	0.00026514	550.279010378076	68.42	2.5831	68.42	68.022	70.605	0					326	94	6	0	0	0	0.0016131	13	17472	17188;17238;17286;17331;17381;17430;17472;17514;17560;17610;17661;17708;17783		114.94	89.544	1	70375000			34871	5048;10976	20451	20452	42259;42260;42261;42262;42263;42264;42265;42266;42267;42268;42269;42270;42271	42265		620			-0.003361350059549295
PYMANVYLI	9	Oxidation (M)	_PYM(Oxidation (M))ANVYLI_		PYM(1)ANVYLI		PYM(48)ANVYLI	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3397216796875	2	550.27826	1098.54197	0.42837	0.00023572	0.10898	5.9971E-05	0.53735	0.00029569	550.2776861965438	71.345	3.2297	71.345	70.768	73.998	0					209	116	3	0	0	0	0.11486	1	18329	18329		48.346	29.089	1	565440			34872	5048;10976	20451	20452	42272	42272		620			-0.003361350059549295
PYMANVYLI	9	Oxidation (M)	_PYM(Oxidation (M))ANVYLI_		PYM(1)ANVYLI		PYM(110)ANVYLI	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2786865234375	2	550.27826	1098.54197	0.39019	0.00021471	0.02676	1.4725E-05	0.41695	0.00022944	550.2790301907933	68.363	2.6718	68.435	67.969	70.641	0.071938					343	96	6	0	0	0	0.0016131	13	17492	17168;17216;17267;17309;17354;17399;17442;17492;17537;17580;17628;17673;17776		114.94	89.544	1	68034000			34873	5048;10976	20451	20452	42273;42274;42275;42276;42277;42278;42279;42280;42281;42282;42283;42284;42285	42280		620			-0.003361350059549295
PYMANVYLI	9	Oxidation (M)	_PYM(Oxidation (M))ANVYLI_		PYM(1)ANVYLI		PYM(48)ANVYLI	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.277099609375	2	550.27826	1098.54197	0.49785	0.00027396	-0.36502	-0.00020086	0.13283	7.3093E-05	550.2777310043917	71.434	2.9801	71.491	70.795	73.775	0.056572					189	108	2	0	0	0	0.11486	1	18616	18616		48.346	25.61	1	477030			34874	5048;10976	20451	20452	42286	42286		620			-0.003361350059549295
PYMANVYLI	9	Oxidation (M)	_PYM(Oxidation (M))ANVYLI_		PYM(1)ANVYLI		PYM(110)ANVYLI	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2786865234375	2	550.27826	1098.54197	0.4783	0.0002632	-0.00084924	-4.6732E-07	0.47745	0.00026273	550.2789259330578	68.434	2.6575	68.415	67.988	70.645	-0.019157					325	95	6	0	0	0	0.0016131	13	17421	17185;17227;17273;17324;17373;17421;17468;17512;17554;17604;17649;17692;17776		114.94	89.544	1	68411000			34875	5048;10976	20451	20452	42287;42288;42289;42290;42291;42292;42293;42294;42295;42296;42297;42298;42299	42292		620			-0.003361350059549295
PYMANVYLI	9	Oxidation (M)	_PYM(Oxidation (M))ANVYLI_		PYM(1)ANVYLI		PYM(60)ANVYLI	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2772827148438	2	550.27826	1098.54197	0.50908	0.00028013	-0.15679	-8.6276E-05	0.35229	0.00019386	550.2775173628954	71.556	2.9798	71.529	70.878	73.858	-0.027275					185	107	3	0	0	0	0.029841	1	18779	18779		60.39	41.133	1	515300			34876	5048;10976	20451	20452	42300	42300		620			-0.003361350059549295
PYMDSPQSIGF	11	Oxidation (M)	_PYM(Oxidation (M))DSPQSIGF_		PYM(1)DSPQSIGF		PYM(88)DSPQSIGF	0	0	1		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.27587890625	2	629.276446	1256.53834	0.33854	0.00021303	-0.25721	-0.00016186	0.081325	5.1176E-05	629.2763312568461	58.976	1.0484	58.976	58.654	59.702	0					106	36	4	0	0	0	0.0016102	4	14288	14288;14334;14388;14439		88.364	73.115	1	2964600			34877	2935	20452	20453	42301;42302;42303;42304	42301		370			-0.07966849570470913
PYMDSPQSIGF	11	Oxidation (M)	_PYM(Oxidation (M))DSPQSIGF_		PYM(1)DSPQSIGF		PYM(120)DSPQSIGF	0	0	1		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.276611328125	2	629.276446	1256.53834	0.20774	0.00013073	-0.0075474	-4.7494E-06	0.2002	0.00012598	629.2764822072805	58.867	0.90558	58.959	58.612	59.517	0.091301					97	31	4	0	0	0	1.2972E-05	4	14290	14245;14290;14336;14396		121.5	95.235	1	2650800			34878	2935	20452	20453	42305;42306;42307;42308	42306		370			-0.07966849570470913
PYMDSPQSIGF	11	Oxidation (M)	_PYM(Oxidation (M))DSPQSIGF_		PYM(1)DSPQSIGF		PYM(120)DSPQSIGF	0	0	1		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.2766723632812	2	629.276446	1256.53834	0.38438	0.00024188	-0.10317	-6.4922E-05	0.28121	0.00017696	629.2763563161864	58.982	1.0803	58.968	58.656	59.736	-0.014267					88	37	3	0	0	0	1.2972E-05	4	14338	14286;14338;14390;14470		121.5	88.718	1	3352300			34879	2935	20452	20453	42309;42310;42311;42312	42310		370			-0.07966849570470913
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.2587890625	2	629.258579	1256.50261	0.3449	0.00021703	0.08588	5.4041E-05	0.43079	0.00027108	629.258542912354	81.527	1.6349	81.527	81.147	82.782	0					191	64	5	0	0	0	0.0019475	3	21257	21207;21257;21307		110.67	110.67	1	2461000			34880	7884;2727	20453	20454	42313;42314;42315	42314					-0.11538563755811992
PYNDYFEYF	9	Unmodified	_PYNDYFEYF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.2587280273438	2	629.258579	1256.50261	0.31313	0.00019704	0.10845	6.8246E-05	0.42158	0.00026528	629.2585631693204	81.548	1.3852	81.524	81.181	82.566	-0.02404					183	57	5	0	0	0	0.0010463	4	21239	21194;21239;21313;21437		122.18	122.18	1	4335800			34881	7884;2727	20453	20454	42316;42317;42318;42319	42317					-0.11538563755811992
PYNHQHEYF	9	Unmodified	_PYNHQHEYF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.1807556152344	3	412.180717	1233.52032	-0.18876	-7.7802E-05	0.054243	2.2358E-05	-0.13451	-5.5444E-05	412.1807228091152	27.203	1.4684	27.203	26.841	28.31	0					139	50	4	0	0	0	0.01251	5	4609	4560;4609;4655;4717;4779		75.571	59.723	1	1283300			34882	3816	20454	20455	42320;42321;42322;42323;42324	42321					-0.08709803710303277
PYNHQHEYF	9	Unmodified	_PYNHQHEYF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	617.7675170898438	2	617.767437	1233.52032	0.10438	6.4481E-05	0.17693	0.0001093	0.28131	0.00017378	617.7674040069554	27.214	0.66203	27.214	26.953	27.615	0					54	22	3	0	0	0	0.014058	2	4576	4576;4624		79.596	65.015	1	246230			34883	3816	20454	20455	42325;42326	42325					-0.08709803710303277
PYNHQHEYF	9	Unmodified	_PYNHQHEYF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.1806945800781	3	412.180717	1233.52032	0.010069	4.1501E-06	-0.13171	-5.4288E-05	-0.12164	-5.0138E-05	412.1806382817632	27.227	1.5553	27.206	26.839	28.394	-0.021412					160	54	5	0	0	0	0.033439	4	4619	4569;4619;4666;4722		59.052	42.487	1	1331200			34884	3816	20454	20455	42327;42328;42329;42330	42328					-0.08709803710303277
PYNHQHEYF	9	Unmodified	_PYNHQHEYF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	617.7672729492188	2	617.767437	1233.52032	-0.046052	-2.845E-05	0.20011	0.00012362	0.15406	9.5172E-05	617.7673942005989	27.26	0.79109	27.238	26.955	27.746	-0.021412					57	27	3	0	0	0	0.043711	1	4615	4615		51.63	37.048	1	217520			34885	3816	20454	20455	42331	42331					-0.08709803710303277
PYNHQHEYF	9	Unmodified	_PYNHQHEYF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.1806640625	3	412.180717	1233.52032	-0.024757	-1.0205E-05	-0.15454	-6.37E-05	-0.1793	-7.3905E-05	412.1806464683394	27.316	1.3842	27.305	26.984	28.368	-0.01156					147	48	5	0	0	0	0.016571	4	4626	4580;4626;4674;4722		69.338	52.772	1	1531900			34886	3816	20454	20455	42332;42333;42334;42335	42333					-0.08709803710303277
PYNHQHEYF	9	Unmodified	_PYNHQHEYF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	617.767578125	2	617.767437	1233.52032	0.032965	2.0365E-05	0.26279	0.00016234	0.29575	0.00018271	617.7674737095922	27.29	0.76577	27.279	27.042	27.808	-0.01156					57	26	3	0	0	0	0.019446	1	4615	4615		70.332	55.75	1	230140			34887	3816	20454	20455	42336	42336					-0.08709803710303277
PYNPILGETF	10	Unmodified	_PYNPILGETF_					0	0	0		ENST00000548535.1_1_12:76779917-76783618:-|nuORF;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000021762|ENST00000263650|OSBPL5;ENSG00000091039|ENST00000261183|OSBPL8	ENST00000548535.1_1_12:76779917-76783618:-|nuORF	ENST00000548535.1_1_12:76779917-76783618:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7928466796875	2	575.792589	1149.57063	0.29595	0.00017041	-0.01998	-1.1504E-05	0.27597	0.0001589	575.7926007767312	74.953	2.2459	74.953	74.566	76.812	0					171	80	3	0	0	0	0.0029936	1	19267	19267		103.35	0	1	953170			34888	510	20455	20456	42337	42337					0.0018230589482755022
PYNPILGETF	10	Unmodified	_PYNPILGETF_					0	0	0		ENST00000548535.1_1_12:76779917-76783618:-|nuORF;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000021762|ENST00000263650|OSBPL5;ENSG00000091039|ENST00000261183|OSBPL8	ENST00000548535.1_1_12:76779917-76783618:-|nuORF	ENST00000548535.1_1_12:76779917-76783618:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7930297851562	2	575.792589	1149.57063	0.35142	0.00020235	-0.087017	-5.0103E-05	0.26441	0.00015224	575.7925224586577	74.95	1.9521	75.003	74.236	76.188	0.052368					147	70	3	0	0	0	0.001757	2	19221	19221;19273		110.67	0	1	1212900			34889	510	20455	20456	42338;42339	42338					0.0018230589482755022
PYNPILGETF	10	Unmodified	_PYNPILGETF_					0	0	0		ENST00000548535.1_1_12:76779917-76783618:-|nuORF;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000021762|ENST00000263650|OSBPL5;ENSG00000091039|ENST00000261183|OSBPL8	ENST00000548535.1_1_12:76779917-76783618:-|nuORF	ENST00000548535.1_1_12:76779917-76783618:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7927856445312	2	575.792589	1149.57063	0.44511	0.00025629	-0.2007	-0.00011556	0.24441	0.00014073	575.7924288113526	75.025	2.5425	74.993	74.557	77.1	-0.031487					189	93	3	0	0	0	0.004829	2	19220	19220;19269		92.653	0	1	1103400			34890	510	20455	20456	42340;42341	42340					0.0018230589482755022
PYNPLWAQL	9	Unmodified	_PYNPLWAQL_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-2|FNIP1;ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000052795|Q9P278-2|FNIP2	nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000052795|ENST00000264433|FNIP2	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.290283203125	2	551.290017	1100.56548	0.67178	0.00037035	-1.0088	-0.00055614	-0.33702	-0.00018579	551.2898783550694	78.679	1.2835	78.679	78.005	79.289	0					166	50	5	0	0	0	0.012929	2	20390	20332;20390		74.929	44.704	1	1140600			34891	8413;673	20456	20457	42342;42343	42343					0.019220468228922982
PYNPLWAQL	9	Unmodified	_PYNPLWAQL_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-2|FNIP1;ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000052795|Q9P278-2|FNIP2	nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000052795|ENST00000264433|FNIP2	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2901000976562	2	551.290017	1100.56548	0.64237	0.00035413	-1.0214	-0.00056308	-0.37902	-0.00020895	551.28985491714	78.636	1.2316	78.694	78.058	79.289	0.058151					156	49	5	0	0	0	0.01083	2	20311	20311;20357		78.149	39.998	1	1045700			34892	8413;673	20456	20457	42344;42345	42344					0.019220468228922982
PYNPLWAQL	9	Unmodified	_PYNPLWAQL_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1;nc|ENSG00000217128|Q8TF40-2|FNIP1;ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000052795|Q9P278-2|FNIP2	nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000052795|ENST00000264433|FNIP2	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.289794921875	2	551.290017	1100.56548	0.74396	0.00041014	-1.1621	-0.00064065	-0.41813	-0.00023051	551.2897422085234	78.726	1.3899	78.695	77.957	79.347	-0.030434					155	55	5	0	0	0	0.034444	1	20348	20348		58.679	28.454	1	892420			34893	8413;673	20456	20457	42346	42346					0.019220468228922982
PYNQQHLYF	9	Unmodified	_PYNQQHLYF_					0	0	0		ENSG00000221968|ENST00000278829|FADS3;ENST00000414624.6_1_11:61645294-61658904:-|nuORF	ENSG00000221968|ENST00000278829|FADS3	ENSG00000221968|ENST00000278829|FADS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.2885131835938	2	605.288005	1208.56146	0.78036	0.00047234	0.52422	0.00031731	1.3046	0.00078965	605.288260990614	47.205	0.81081	47.205	46.961	47.771	0					83	28	4	0	0	0	4.6532E-11	3	10683	10683;10732;10791		188.08	188.08	1	2614000			34894	8430	20457	20458	42347;42348;42349	42347					-0.03448042670834184
PYNQQHLYF	9	Unmodified	_PYNQQHLYF_					0	0	0		ENSG00000221968|ENST00000278829|FADS3;ENST00000414624.6_1_11:61645294-61658904:-|nuORF	ENSG00000221968|ENST00000278829|FADS3	ENSG00000221968|ENST00000278829|FADS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.2883911132812	2	605.288005	1208.56146	0.92637	0.00056072	0.30478	0.00018448	1.2312	0.0007452	605.288171990498	47.106	0.87949	47.16	46.877	47.757	0.054375					91	31	4	0	0	0	1.9541E-11	3	10624	10624;10666;10715		196.94	196.94	1	2340400			34895	8430	20457	20458	42350;42351;42352	42350					-0.03448042670834184
PYNQQHLYF	9	Unmodified	_PYNQQHLYF_					0	0	0		ENSG00000221968|ENST00000278829|FADS3;ENST00000414624.6_1_11:61645294-61658904:-|nuORF	ENSG00000221968|ENST00000278829|FADS3	ENSG00000221968|ENST00000278829|FADS3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	605.288005	1208.56146	0.51894	0.00031411	0.92124	0.00055762	1.4402	0.00087173	605.2884659183452	46.998	1.0173	47.05	46.79	47.808	0.052574	-0.088136	0.00043452	NaN	196.94	96	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2746200			34896	8430	20457	20458							-0.03448042670834184
PYNTIRSAV	9	Unmodified	_PYNTIRSAV_					0	0	0			REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF	REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2789306640625	2	510.777274	1019.53999	0.30007	0.00015327	-2.3327	-0.0011915	-2.0327	-0.0010382	511.27849076205445	43.387	1.2529	43.387	42.786	44.039	0					128	45	4	0	0	0	0.23767	1	9572	9572		18.146	0.011366	1	2305700	+		34897	13537	20458	20459	42353	42353					0.031005723004795982
PYPEKSGK	8	Unmodified	_PYPEKSGK_					0	0	0		ENSG00000155530|ENST00000285928|LRGUK	ENSG00000155530|ENST00000285928|LRGUK	ENSG00000155530|ENST00000285928|LRGUK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.2562255859375	2	453.239993	904.465432	0.12797	5.8003E-05	-0.1911	-8.6616E-05	-0.063129	-2.8613E-05	453.24016176463874	21.673	2.004	21.624	20.865	22.869	-0.049377					146	70	3	0	0	0	0.3366	1	3003	3003		18.135	1.1927	1	166970			34898	5180	20459	20460	42354	42354					0.00937809489096253
PYPPLDLRN	9	Unmodified	_PYPPLDLRN_					0	0	0			REV__ENSG00000002746|ENST00000395891|HECW1	REV__ENSG00000002746|ENST00000395891|HECW1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.7930908203125	2	542.792924	1083.57129	0.54742	0.00029713	0.27386	0.00014865	0.82127	0.00044578	542.7931210338024	40.545	1.3863	40.644	40.146	41.532	0.099407					97	50	2	0	0	0	0.041175	1	8597	8597		56.177	0.6743	1	12024000	+		34899	13320	20460	20461	42355	42355					0.032851453345756454
PYPPPPFS	8	Unmodified	_PYPPPPFS_					0	0	0			REV__ENST00000355300.6_1_15:77906033-77906324:-|nuORF	REV__ENST00000355300.6_1_15:77906033-77906324:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.75933837890625	2	451.226354	900.438155	0.17739	8.0044E-05	-0.35585	-0.00016057	-0.17846	-8.0526E-05	451.2262397742611	62.762	0.39621	62.753	62.542	62.938	-0.0085564					20	14	3	0	0	0	0.29134	1	15463	15463		34.187	0	1	123520	+		34900	20186	20461	20462	42356	42356					-0.016046740512933866
PYPPPPPEF	9	Unmodified	_PYPPPPPEF_					0	0	0		ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENSG00000132471|ENST00000254806|WBP2	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7577514648438	2	520.758018	1039.50148	0.20149	0.00010493	0.024095	1.2547E-05	0.22559	0.00011748	520.7579569410593	59.909	2.2695	59.909	59.353	61.623	0					214	82	3	0	0	0	4.2225E-11	10	14689	14543;14595;14643;14689;14737;14789;14841;14891;14951;15004		189.49	151.34	1	9901800			34901	3639	20462	20463	42357;42358;42359;42360;42361;42362;42363;42364;42365;42366	42360					-0.016687333340541954
PYPPPPPEF	9	Unmodified	_PYPPPPPEF_					0	0	0		ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENSG00000132471|ENST00000254806|WBP2	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7579956054688	2	520.758018	1039.50148	-0.0085332	-4.4437E-06	0.26637	0.00013872	0.25784	0.00013427	520.758031889911	59.827	2.1592	59.922	59.294	61.453	0.095089					218	78	4	0	0	0	4.2225E-11	10	14487	14487;14538;14580;14633;14683;14730;14780;14830;14835;14905		189.49	151.34	1	9230900			34902	3639	20462	20463	42367;42368;42369;42370;42371;42372;42373;42374;42375;42376	42367					-0.016687333340541954
PYPPPPPEF	9	Unmodified	_PYPPPPPEF_					0	0	0		ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENSG00000132471|ENST00000254806|WBP2	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7581176757812	2	520.758018	1039.50148	0.35215	0.00018338	-0.012946	-6.7419E-06	0.3392	0.00017664	520.757905690517	59.973	2.7775	59.962	59.199	61.976	-0.011486					265	100	4	0	0	0	4.2225E-11	10	14516	14516;14561;14613;14667;14717;14765;14818;14869;14899;14964		189.49	151.34	1	9589100			34903	3639	20462	20463	42377;42378;42379;42380;42381;42382;42383;42384;42385;42386	42377					-0.016687333340541954
PYPQYFTQL	9	Unmodified	_PYPQYFTQL_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7876586914062	2	578.787307	1155.56006	0.28141	0.00016288	0.050573	2.9271E-05	0.33198	0.00019215	578.7872980742609	70.376	1.1339	70.376	70.023	71.157	0					136	40	5	0	0	0	1.2283E-05	3	17830	17782;17830;17880		155.03	109.01	1	6205400			34904	1814	20463	20464	42387;42388;42389	42388					-0.01149676759587237
PYPQYFTQL	9	Unmodified	_PYPQYFTQL_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.78759765625	2	578.787307	1155.56006	0.33782	0.00019552	-0.054152	-3.1342E-05	0.28366	0.00016418	578.7872177393515	70.392	1.4718	70.452	70.045	71.517	0.060783					149	52	5	0	0	0	2.942E-07	3	17822	17775;17822;17866		168.66	122.64	1	5698000			34905	1814	20463	20464	42390;42391;42392	42391					-0.01149676759587237
PYPQYFTQL	9	Unmodified	_PYPQYFTQL_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.7874755859375	2	578.787307	1155.56006	0.33108	0.00019163	-0.0041391	-2.3956E-06	0.32694	0.00018923	578.7872576106674	70.457	1.4931	70.432	70.047	71.54	-0.024872					155	53	5	0	0	0	1.2283E-05	4	17833	17786;17833;17877;17923		155.03	109.01	1	6625500			34906	1814	20463	20464	42393;42394;42395;42396	42394					-0.01149676759587237
PYPQYLAVI	9	Unmodified	_PYPQYLAVI_					0	0	0		ENSG00000063322|ENST00000315588|MED29	ENSG00000063322|ENST00000315588|MED29	ENSG00000063322|ENST00000315588|MED29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.295654296875	2	532.294768	1062.57498	0.25068	0.00013343	0.76164	0.00040542	1.0123	0.00053885	532.2950495665134	75.887	2.0212	75.887	75.534	77.555	0					152	73	4	0	0	0	0.12846	3	19489	19489;19537;19583		34.102	5.6156	1	2972400			34907	776	20464	20465	42397;42398;42399	42397					0.04619815108412695
PYPQYLAVI	9	Unmodified	_PYPQYLAVI_					0	0	0		ENSG00000063322|ENST00000315588|MED29	ENSG00000063322|ENST00000315588|MED29	ENSG00000063322|ENST00000315588|MED29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.295654296875	2	532.294768	1062.57498	0.2894	0.00015405	0.8184	0.00043563	1.1078	0.00058968	532.2950187391061	75.859	0.94454	75.913	75.594	76.539	0.053421					84	33	4	0	0	0	0.079066	3	19508	19461;19508;19570		42.095	7.9921	1	2730200			34908	776	20464	20465	42400;42401;42402	42401					0.04619815108412695
PYPQYLAVI	9	Unmodified	_PYPQYLAVI_					0	0	0		ENSG00000063322|ENST00000315588|MED29	ENSG00000063322|ENST00000315588|MED29	ENSG00000063322|ENST00000315588|MED29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2955932617188	2	532.294768	1062.57498	0.46193	0.00024588	0.49716	0.00026464	0.95909	0.00051052	532.2949005369093	75.94	1.2454	75.909	75.558	76.804	-0.031487					110	45	4	0	0	0	0.12846	3	19481	19481;19525;19571		34.102	5.6156	1	2967300			34909	776	20464	20465	42403;42404;42405	42403					0.04619815108412695
PYPRLVEKSQ	10	Unmodified	_PYPRLVEKSQ_					0	0	0			REV__ENST00000454748.7_1_19:49793382-49793970:-|nuORF	REV__ENST00000454748.7_1_19:49793382-49793970:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8374633789062	2	608.837862	1215.66117	-0.013757	-8.376E-06	-0.033989	-2.0694E-05	-0.047747	-2.907E-05	608.8376537357569	105.7	0.97192	105.7	105.33	106.3	0					340	139	3	0	0	0	0.39935	1	27928	27928		3.5965	1.098	1	931180	+		34910	21152	20465	20466	42406	42406					0.06196774943123273
PYPRLVEKSQ	10	Unmodified	_PYPRLVEKSQ_					0	0	0			REV__ENST00000454748.7_1_19:49793382-49793970:-|nuORF	REV__ENST00000454748.7_1_19:49793382-49793970:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8367309570312	2	608.837862	1215.66117	0.2454	0.00014941	-0.2651	-0.0001614	-0.019691	-1.1989E-05	608.8375255550451	105.8	0.92616	105.8	105.37	106.29	0.0031738					349	133	3	0	0	0	0.38233	1	27975	27975		6.7232	3.1267	1	1060400	+		34911	21152	20465	20466	42407	42407					0.06196774943123273
PYPYVPQVP	9	Unmodified	_PYPYVPQVP_					0	0	0			REV__ENST00000464117.1_1_1:201857869-201860971:+|nuORF	REV__ENST00000464117.1_1_1:201857869-201860971:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3318481445312	2	530.279118	1058.54368	0.70245	0.00037249	0.76456	0.00040543	1.467	0.00077792	530.2797542229347	64.654	0.49165	64.654	64.342	64.834	0					29	17	3	0	0	0	0.25066	1	16088	16088		11.64	4.3511	1	175940	+		34912	18885	20466	20467	42408	42408					0.01675242074338712
PYQALRLAL	9	Unmodified	_PYQALRLAL_					0	0	0			REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF	REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8140258789062	2	522.813659	1043.61277	0.6153	0.00032169	-0.66067	-0.00034541	-0.045366	-2.3718E-05	522.8130357274163	45.346	0.81055	45.346	44.829	45.64	0					59	29	3	0	0	0	0.10075	1	10114	10114		38.151	7.9264	1	734810	+		34913	14089	20467	20468	42409	42409					0.09270326093860604
PYQALRLAL	9	Unmodified	_PYQALRLAL_					0	0	0			REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF	REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2695922851562	2	522.813659	1043.61277	0.6153	0.00032169	-0.66067	-0.00034541	-0.045366	-2.3718E-05	522.8130357274163	45.346	0.81055	45.346	44.829	45.64	0					59	29	3	0	0	0	0.12846	1	10064	10064		36.044	12.896	1	734810	+		34914	14089	20467	20468	42410	42410					0.09270326093860604
PYQALRLAL	9	Unmodified	_PYQALRLAL_					0	0	0			REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF	REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8143920898438	2	522.813659	1043.61277	0.57009	0.00029805	0.21274	0.00011122	0.78283	0.00040928	522.8138406872055	45.056	1.1643	45.125	44.349	45.514	0.068573					55	21	3	0	0	0	0.10075	1	10087	10087		38.151	6.8828	1	734500	+		34915	14089	20467	20468	42411	42411					0.09270326093860604
PYQALRLAL	9	Unmodified	_PYQALRLAL_					0	0	0			REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF	REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8141479492188	2	522.813659	1043.61277	0.56947	0.00029773	0.0066097	3.4556E-06	0.57608	0.00030118	522.8134549742322	45.091	0.71929	45.166	44.835	45.554	0.075047					66	26	4	0	0	0	0.10075	2	10075	10031;10075		38.151	9.6643	1	742950	+		34916	14089	20467	20468	42412;42413	42413					0.09270326093860604
PYQDHNKIYE	10	Unmodified	_PYQDHNKIYE_					0	0	0			REV__ENST00000517609.5_1_8:124429070-124447771:+|nuORF	REV__ENST00000517609.5_1_8:124429070-124447771:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.26092529296875	3	436.206932	1305.59897	0.34738	0.00015153	-0.71021	-0.0003098	-0.36283	-0.00015827	436.20680134102275	45.77	0.35889	45.77	45.586	45.945	0					26	12	3	0	0	0	0.3183	1	10258	10258		8.4443	0.49891	1	200240	+		34917	21856	20468	20469	42414	42414					-0.04160996195832922
PYQDHNKIYE	10	Unmodified	_PYQDHNKIYE_					0	0	0			REV__ENST00000517609.5_1_8:124429070-124447771:+|nuORF	REV__ENST00000517609.5_1_8:124429070-124447771:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	436.206932	1305.59897	0.11616	5.067E-05	0.22625	9.8693E-05	0.34241	0.00014936	436.2070195517795	45.454	0.45348	45.519	45.358	45.811	0.065048	-0.12567	0.0006778	NaN	8.4443	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130580	+		34918	21856	20468	20469							-0.04160996195832922
PYQDLPHL	8	Unmodified	_PYQDLPHL_					0	0	0		nc|ENSG00000074416|Q99685-2|MGLL;nc|ENSG00000074416|Q99685|MGLL;ENSG00000074416|ENST00000265052|MGLL;ENST00000479967.5_1_3:127434467-127541990:-|nuORF	nc|ENSG00000074416|Q99685-2|MGLL	nc|ENSG00000074416|Q99685-2|MGLL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2637634277344	2	491.753267	981.491981	0.41231	0.00020276	-0.9951	-0.00048935	-0.58279	-0.00028659	491.75253907152626	59.7	0.12074	59.688	59.593	59.714	-0.011486					5	3	2	0	0	0	0.026337	1	14520	14520		123.45	49.054	1	107200			34919	1021	20469	20470	42415	42415					0.0004949838042875854
PYQNYTVI	8	Unmodified	_PYQNYTVI_					0	0	0		nc|ENSG00000137872|Q8NFY4-7|SEMA6D;nc|ENSG00000137872|Q8NFY4-8|SEMA6D;nc|ENSG00000137872|Q8NFY4-3|SEMA6D;nc|ENSG00000137872|Q8NFY4-2|SEMA6D;nc|ENSG00000137872|Q8NFY4-4|SEMA6D;nc|ENSG00000137872|Q8NFY4-5|SEMA6D;nc|ENSG00000137872|Q8NFY4-6|SEMA6D;ENSG00000137872|ENST00000536845|SEMA6D	nc|ENSG00000137872|Q8NFY4-7|SEMA6D	nc|ENSG00000137872|Q8NFY4-7|SEMA6D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.28759765625	2	499.2531	996.491647	0.6804	0.00033969	-0.87875	-0.00043872	-0.19835	-9.9025E-05	499.2542456275204	44.743	0.086861	44.743	44.684	44.771	0					4	2	2	0	0	0	0.34218	1	9935	9935		9.3474	4.1168	1	88328			34920	4092	20470	20471	42416	42416					-0.006739213394439503
PYQSQIAVF	9	Unmodified	_PYQSQIAVF_					0	0	0		nc|ENSG00000152942|O75943-3|RAD17;nc|ENSG00000152942|O75943-4|RAD17;ENSG00000152942|ENST00000354868|RAD17;nc|ENSG00000152942|O75943|RAD17;RAD17|p.F272Sfs*14|1|0.18|ENSG00000152942|chr5:69386262-69386263|TT/-|frameshift_variant	nc|ENSG00000152942|O75943-3|RAD17	nc|ENSG00000152942|O75943-3|RAD17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7743530273438	2	526.7742	1051.53385	0.58023	0.00030565	-0.15347	-8.0846E-05	0.42676	0.00022481	526.7741209921785	62.543	0.69132	62.543	62.292	62.984	0					57	25	3	0	0	0	0.03069	1	15459	15459		60.074	23.947	1	1008100			34921	5047	20471	20472	42417	42417					0.010140540689462796
PYQSQIAVF	9	Unmodified	_PYQSQIAVF_					0	0	0		nc|ENSG00000152942|O75943-3|RAD17;nc|ENSG00000152942|O75943-4|RAD17;ENSG00000152942|ENST00000354868|RAD17;nc|ENSG00000152942|O75943|RAD17;RAD17|p.F272Sfs*14|1|0.18|ENSG00000152942|chr5:69386262-69386263|TT/-|frameshift_variant	nc|ENSG00000152942|O75943-3|RAD17	nc|ENSG00000152942|O75943-3|RAD17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7744750976562	2	526.7742	1051.53385	0.53249	0.0002805	-1.0581	-0.00055736	-0.52557	-0.00027686	526.7740975305134	62.472	0.76039	62.569	62.307	63.068	0.096985					58	27	3	0	0	0	0.14786	1	15430	15430		31.268	8.5321	1	989290			34922	5047	20471	20472	42418	42418					0.010140540689462796
PYQSQIAVF	9	Unmodified	_PYQSQIAVF_					0	0	0		nc|ENSG00000152942|O75943-3|RAD17;nc|ENSG00000152942|O75943-4|RAD17;ENSG00000152942|ENST00000354868|RAD17;nc|ENSG00000152942|O75943|RAD17;RAD17|p.F272Sfs*14|1|0.18|ENSG00000152942|chr5:69386262-69386263|TT/-|frameshift_variant	nc|ENSG00000152942|O75943-3|RAD17	nc|ENSG00000152942|O75943-3|RAD17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7744140625	2	526.7742	1051.53385	0.53175	0.00028011	-0.18818	-9.9128E-05	0.34357	0.00018098	526.7741067599801	62.546	0.80148	62.538	62.25	63.051	-0.0085564					57	29	2	0	0	0	0.10059	1	15437	15437		38.176	9.094	1	1107500			34923	5047	20471	20472	42419	42419					0.010140540689462796
PYQVLALYN	9	Unmodified	_PYQVLALYN_					0	0	0		nc|ENSG00000119699|P10600-2|TGFB3;ENSG00000119699|ENST00000238682|TGFB3	nc|ENSG00000119699|P10600-2|TGFB3	nc|ENSG00000119699|P10600-2|TGFB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3300170898438	2	540.78985	1079.56515	0.3417	0.00018479	0.38226	0.00020672	0.72396	0.00039151	540.7902644926146	76.124	0.86218	76.178	75.944	76.806	0.053413					38	30	2	0	0	0	0.2322	1	19550	19550		20.454	0	1	281750			34924	2900	20472	20473	42420	42420					0.028546271030108983
PYREIDALA	9	Unmodified	_PYREIDALA_					0	0	0		ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.7774047851562	2	524.277106	1046.53966	0.60407	0.0003167	0.32493	0.00017035	0.929	0.00048705	524.2774258075601	39.017	1.1393	39.116	38.923	40.062	0.099403					84	40	4	0	0	0	0.19747	1	8286	8286		24.021	2.4836	1	2016200			34925	3509	20473	20474	42421	42421					0.01825152580613576
PYREIDVF	8	Unmodified	_PYREIDVF_					0	0	0			REV__nc|ENSG00000149305|O95264-2|HTR3B	REV__nc|ENSG00000149305|O95264-2|HTR3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.8027954101562	2	519.766374	1037.5182	0.41568	0.00021606	0.55942	0.00029077	0.9751	0.00050683	519.766700124894	66.128	0.88621	66.115	65.748	66.634	-0.013596					52	31	3	0	0	0	0.31934	1	16598	16598		24.674	24.674	1	442360	+		34926	16459	20474	20475	42422	42422					0.0009376755190260155
PYRHLLVMSI	10	Unmodified	_PYRHLLVMSI_					0	0	0			REV__ENSG00000106013|ENST00000265224|ANKRD7	REV__ENSG00000106013|ENST00000265224|ANKRD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2082214355469	3	410.233876	1227.6798	0.17247	7.0752E-05	1.6153	0.00066264	1.7877	0.0007334	410.2344265434667	30.549	0.33926	30.577	30.298	30.638	0.027946					20	11	3	0	0	0	0.31696	1	5558	5558		10.151	0.6066	1	278530	+		34927	14503	20475	20476	42423	42423					0.07506613313353228
PYRHLLVMSI	10	Unmodified	_PYRHLLVMSI_					0	0	0			REV__ENSG00000106013|ENST00000265224|ANKRD7	REV__ENSG00000106013|ENST00000265224|ANKRD7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	410.233876	1227.6798	-0.0014604	-5.9909E-07	0.39164	0.00016067	0.39018	0.00016007	410.23400389838787	30.536	0.2281	30.536	30.359	30.587	0	-0.020364	-0.00089599	NaN	10.151	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270330	+		34928	14503	20475	20476							0.07506613313353228
PYRLIFEKF	9	Unmodified	_PYRLIFEKF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.8968505859375	3	404.89737	1211.67028	0.030669	1.2418E-05	-0.42327	-0.00017138	-0.3926	-0.00015896	404.8970548284414	57.271	1.1907	57.271	56.713	57.904	0					102	43	4	0	0	0	0.062981	1	13861	13861		48.073	29.352	1	999480			34929	8602	20476	20477	42424	42424					0.07291168299434503
PYRLIFEKF	9	Unmodified	_PYRLIFEKF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.8972473144531	3	404.89737	1211.67028	-0.18606	-7.5335E-05	-0.2103	-8.5149E-05	-0.39636	-0.00016048	404.8970269122416	57.558	1.3245	57.541	57.117	58.442	-0.0172					117	48	4	0	0	0	0.038413	2	13873	13873;13922		57.204	43.685	1	1107900			34930	8602	20476	20477	42425;42426	42425					0.07291168299434503
PYRLIFEKF	9	Unmodified	_PYRLIFEKF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	404.89737	1211.67028	-0.11571	-4.6851E-05	-0.41357	-0.00016745	-0.52928	-0.0002143	404.8971167824884	57.12	1.1848	57.198	56.778	57.963	0.078674	-0.13825	-4.3765E-05	NaN	57.204	86	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1061100			34931	8602	20476	20477							0.07291168299434503
PYRPIKLD	8	Unmodified	_PYRPIKLD_					0	0	0			REV__nc|ENSG00000150676|Q8IWF9-2|CCDC83	REV__nc|ENSG00000150676|Q8IWF9-2|CCDC83	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.3033142089844	2	501.292559	1000.57057	0.49591	0.0002486	-2.45	-0.0012282	-1.9541	-0.00097957	501.291248025168	72.533	0.11766	72.587	72.484	72.601	0.053833					5	3	2	0	0	0	0.34185	1	18482	18482		10.183	2.8942	1	41966	+		34932	23029	20477	20478	42427	42427					0.07030350685499798
PYRREVEV	8	Unmodified	_PYRREVEV_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.S1928Lfs*17|1|0.08|ENSG00000083857|chr4:186620804-186620804|A/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7406005859375	2	524.282723	1046.55089	0.43027	0.00022559	0.098658	5.1725E-05	0.52893	0.00027731	524.2828157856375	39.479	0.76153	39.571	39.39	40.151	0.09267					41	26	2	0	0	0	0.3366	1	8360	8360		18.135	0	1	382710			34933	1234	20478	20479	42428	42428					0.02947974674748366
PYRVEWEAD	9	Unmodified	_PYRVEWEAD_					0	0	0		nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1	nc|ENSG00000133424|O95461-2|LARGE1	nc|ENSG00000133424|O95461-2|LARGE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3505249023438	2	582.769645	1163.52474	0.70077	0.00040838	-1.2989	-0.00075699	-0.59818	-0.0003486	582.7689156061184	50.715	0.32597	50.76	50.602	50.928	0.045383					13	11	2	0	0	0	0.25417	1	11748	11748		8.5933	0	1	131670			34934	3711	20479	20480	42429	42429					-0.05048339287372983
PYSEYFEYF	9	Unmodified	_PYSEYFEYF_					0	0	0		ENST00000491581.5_1_5:141004689-141007494:-|nuORF;ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3	ENST00000491581.5_1_5:141004689-141007494:-|nuORF	ENST00000491581.5_1_5:141004689-141007494:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.7611694335938	2	622.760955	1243.50736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.614	1	80.614	80.114	81.114	0								0	0	0	0.19013	1	20961	20961		25.399	14.575	1				34935	6569	20480	20481	42430	42430					-0.10465679613048451
PYSEYFEYF	9	Unmodified	_PYSEYFEYF_					0	0	0		ENST00000491581.5_1_5:141004689-141007494:-|nuORF;ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3	ENST00000491581.5_1_5:141004689-141007494:-|nuORF	ENST00000491581.5_1_5:141004689-141007494:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.7611083984375	2	622.760955	1243.50736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.644	1	80.709	80.209	81.209	0.065094								0	0	0	0.19013	1	20960	20960		25.399	14.575	1				34936	6569	20480	20481	42431	42431					-0.10465679613048451
PYSEYFEYF	9	Unmodified	_PYSEYFEYF_					0	0	0		ENST00000491581.5_1_5:141004689-141007494:-|nuORF;ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3	ENST00000491581.5_1_5:141004689-141007494:-|nuORF	ENST00000491581.5_1_5:141004689-141007494:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.7616577148438	2	622.760955	1243.50736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.766	1	80.739	80.239	81.239	-0.026825								0	0	0	0.19013	1	20990	20990		25.399	14.575	1				34937	6569	20480	20481	42432	42432					-0.10465679613048451
PYSLKGRKF	9	Unmodified	_PYSLKGRKF_					0	0	0		ENST00000425778.5_1_2:38976246-38976381:-|nuORF	ENST00000425778.5_1_2:38976246-38976381:-|nuORF	ENST00000425778.5_1_2:38976246-38976381:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3193359375	2	548.319109	1094.62366	0.43904	0.00024073	0.11182	6.1315E-05	0.55086	0.00030205	548.3190211722946	62.912	0.5926	62.904	62.675	63.268	-0.0085526					46	21	3	0	0	0	0.20344	1	15558	15558		23.148	5.0134	1	584300			34938	10410	20481	20482	42433	42433					0.0801372846817685
PYSLKGRKF	9	Unmodified	_PYSLKGRKF_					0	0	0		ENST00000425778.5_1_2:38976246-38976381:-|nuORF	ENST00000425778.5_1_2:38976246-38976381:-|nuORF	ENST00000425778.5_1_2:38976246-38976381:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	548.319109	1094.62366	0.43341	0.00023765	0.1039	5.6969E-05	0.53731	0.00029461	548.3189212169499	62.928	0.5361	62.928	62.689	63.225	0	0.016702	4.7301E-05	NaN	23.148	49	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	644530			34939	10410	20481	20482							0.0801372846817685
PYSLKGRKF	9	Unmodified	_PYSLKGRKF_					0	0	0		ENST00000425778.5_1_2:38976246-38976381:-|nuORF	ENST00000425778.5_1_2:38976246-38976381:-|nuORF	ENST00000425778.5_1_2:38976246-38976381:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.319109	1094.62366	0.576	0.00031583	-0.045954	-2.5198E-05	0.53004	0.00029063	548.3188503597938	62.806	0.59456	62.902	62.688	63.282	0.095722	-0.0093119	-0.00011703	NaN	23.148	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	584720			34940	10410	20481	20482							0.0801372846817685
PYSQITCLV	9	Unmodified	_PYSQITCLV_					0	0	0		ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;nc|ENSG00000162601|Q5VVJ2-3|MYSM1	ENSG00000162601|ENST00000472487|MYSM1	ENSG00000162601|ENST00000472487|MYSM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2970581054688	2	512.26261	1022.51067	0.40512	0.00020753	0.36938	0.00018922	0.7745	0.00039675	512.2628256895267	63.956	0.71217	64.049	63.678	64.391	0.092876					36	25	2	0	0	0	0.20651	1	15901	15901		26.884	3.7352	1	180130			34941	5585	20482	20483	42434	42434					0.00031291959965074057
PYSVYLFSF	9	Unmodified	_PYSVYLFSF_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7787475585938	2	561.778951	1121.54335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.979	1	91.979	91.479	92.479	0								0	0	0	0.16757	1	24445	24445		30.637	10.183	1				34942	4390	20483	20484	42435	42435					-0.012561776455186191
PYSVYLFSF	9	Unmodified	_PYSVYLFSF_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.778564453125	2	561.778951	1121.54335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.108	1	92.108	91.608	92.608	0								0	0	0	0.13597	1	24485	24485		37.974	11.09	1				34943	4390	20483	20484	42436	42436					-0.012561776455186191
PYSVYLFSF	9	Unmodified	_PYSVYLFSF_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.77880859375	2	561.778951	1121.54335	0.35284	0.00019822	2.2428	0.0012599	2.5956	0.0014582	561.7789185288816	91.938	0.73386	92.028	91.761	92.495	0.090668					96	48	4	0	0	0	0.034444	2	24409	24409;24460		58.679	27.41	1	345710			34944	4390	20483	20484	42437;42438	42437					-0.012561776455186191
PYSVYLFSF	9	Unmodified	_PYSVYLFSF_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7789916992188	2	561.778951	1121.54335	0.43	0.00024156	0.20077	0.00011279	0.63077	0.00035435	561.7786875147345	92.011	0.64756	92.011	91.785	92.433	0.00046539					96	42	4	0	0	0	0.057976	1	24439	24439		49.933	27.197	1	442110			34945	4390	20483	20484	42439	42439					-0.012561776455186191
PYTELSMGSI	10	Unmodified	_PYTELSMGSI_					0	0	0		ENST00000430404.6_1_7:96608588-96641184:-|nuORF	ENST00000430404.6_1_7:96608588-96641184:-|nuORF	ENST00000430404.6_1_7:96608588-96641184:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7772216796875	2	549.262807	1096.51106	0.60961	0.00033484	-0.15243	-8.3722E-05	0.45718	0.00025111	549.2626991789916	45.492	0.67659	45.557	45.274	45.951	0.065048					58	24	3	0	0	0	0.21644	1	10140	10140		30.637	6.8468	1	821800			34946	10466	20484	20485	42440	42440					-0.033333331107996855
PYTERRWHRWL	11	Unmodified	_PYTERRWHRWL_					0	0	0			REV__ENSG00000168907|ENST00000397272|PLA2G4F	REV__ENSG00000168907|ENST00000397272|PLA2G4F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3132934570312	3	533.947898	1598.82186	0.40937	0.00021858	-0.48925	-0.00026124	-0.079881	-4.2652E-05	534.2821206674987	55.452	0.84276	55.452	55.039	55.882	0					78	30	4	0	0	0	0.33296	1	13278	13278		1.2148	0	1	1966600	+		34947	17488	20485	20486	42441	42441					0.04640542379888757
PYTKVEESF	9	Unmodified	_PYTKVEESF_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2691040039062	2	550.268947	1098.52334	0.032942	1.8127E-05	0.46337	0.00025498	0.49632	0.00027311	550.269061326264	39.168	1.6034	39.168	38.623	40.226	0					98	57	2	0	0	0	2.4074E-11	1	8235	8235		195.45	130.22	1	2572200			34948	7325	20486	20487	42442	42442					-0.021979733761327225
PYTKVEESF	9	Unmodified	_PYTKVEESF_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.26904296875	2	550.268947	1098.52334	0.33465	0.00018415	0.72517	0.00039904	1.0598	0.00058319	550.2688942352278	38.982	1.6059	39.075	38.648	40.254	0.09267					122	57	4	0	0	0	2.973E-07	1	8195	8195		168.54	102.08	1	2491300			34949	7325	20486	20487	42443	42443					-0.021979733761327225
PYTNYTFDF	9	Unmodified	_PYTNYTFDF_					0	0	0		nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000138767|ENST00000504123|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6	nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6	nc|ENSG00000138767|Q96LI5-2|CNOT6L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3136596679688	2	584.253297	1166.49204	0.20518	0.00011988	0.50449	0.00029475	0.70967	0.00041463	584.2538984175055	73.383	0.55556	73.383	73.133	73.689	0					40	19	3	0	0	0	0.14646	1	18748	18748		43.772	19.752	1	214720			34950	4191;2489	20487	20488	42444	42444					-0.08454546410234798
PYTNYTFDF	9	Unmodified	_PYTNYTFDF_					0	0	0		nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000138767|ENST00000504123|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6	nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6	nc|ENSG00000138767|Q96LI5-2|CNOT6L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.31396484375	2	584.253297	1166.49204	0.14097	8.236E-05	0.68757	0.00040171	0.82854	0.00048407	584.2536854030287	73.381	0.46334	73.435	73.091	73.555	0.053833					28	16	2	0	0	0	0.22143	1	18730	18730		24.991	4.5373	1	213750			34951	4191;2489	20487	20488	42445	42445					-0.08454546410234798
PYTNYTFDF	9	Unmodified	_PYTNYTFDF_					0	0	0		nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000138767|ENST00000504123|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6	nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6	nc|ENSG00000138767|Q96LI5-2|CNOT6L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3143920898438	2	584.253297	1166.49204	0.35633	0.00020819	0.18993	0.00011097	0.54625	0.00031915	584.2538677885113	73.455	0.40385	73.426	73.153	73.557	-0.029305					31	14	3	0	0	0	0.19686	1	18753	18753		31.268	4.3847	1	253820			34952	4191;2489	20487	20488	42446	42446					-0.08454546410234798
PYTPFLTEL	9	Unmodified	_PYTPFLTEL_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.33056640625	2	540.784233	1079.55391	0.2146	0.00011605	0.865	0.00046778	1.0796	0.00058383	540.7847355998333	81.23	0.75441	81.299	80.752	81.507	0.068993					73	36	3	0	0	0	0.20167	1	21130	21130		29.082	12.139	1	455780			34953	7846	20488	20489	42447	42447					0.017318050088988457
PYTPFLTEL	9	Unmodified	_PYTPFLTEL_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3305053710938	2	540.784233	1079.55391	0.55134	0.00029815	0.55459	0.00029992	1.1059	0.00059807	540.7845475551197	81.291	0.72433	81.267	80.817	81.541	-0.02404					60	31	3	0	0	0	0.23784	1	21208	21208		19.257	7.6167	1	393430			34954	7846	20488	20489	42448	42448					0.017318050088988457
PYTPQFKVF	9	Unmodified	_PYTPQFKVF_					0	0	0		NFAM1|p.N107Efs*131|1|0.49|ENSG00000235568|chr22:42411539-42411540|-/C|frameshift_variant;ENSG00000235568|ENST00000329021|NFAM1	NFAM1|p.N107Efs*131|1|0.49|ENSG00000235568|chr22:42411539-42411540|-/C|frameshift_variant	NFAM1|p.N107Efs*131|1|0.49|ENSG00000235568|chr22:42411539-42411540|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.26806640625	2	563.800217	1125.58588	0.33923	0.00019126	0.37399	0.00021085	0.71322	0.00040211	563.8006036607422	68.566	0.87607	68.566	68.101	68.977	0					42	32	2	0	0	0	0.22061	1	17391	17391		18.146	11.423	1	211120			34955	8494	20489	20490	42449	42449					0.02811217482712891
PYVNGFYKF	9	Unmodified	_PYVNGFYKF_					0	0	0		ENST00000371822.9_1_X:117583420-117583648:+|nuORF	ENST00000371822.9_1_X:117583420-117583648:+|nuORF	ENST00000371822.9_1_X:117583420-117583648:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.78173828125	2	567.784567	1133.55458	0.20436	0.00011603	0.025983	1.4753E-05	0.23035	0.00013079	568.2880176070058	111.65	8.6121	111.66	111.4	120.01	0.01152					2009	1062	2	0	0	0	0.25526	1	29089	29089		7.9102	1.7044	1	181370			34956	9828	20490	20491	42450	42450					-0.006853555513998799
PYVNNVPHL	9	Unmodified	_PYVNNVPHL_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7799072265625	2	526.779816	1051.54508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.335	1	47.387	46.887	47.887	0.052574								0	0	0	0.000604	1	10738	10738		100.37	63.905	1				34957	6138	20491	20492	42451	42451					0.021368761630810695
PYVQQEFTL	9	Unmodified	_PYVQQEFTL_					0	0	0			REV__ENSG00000112234|ENST00000369244|FBXL4	REV__ENSG00000112234|ENST00000369244|FBXL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3436889648438	2	562.784764	1123.55498	0.74834	0.00042115	-2.7572	-0.0015517	-2.0089	-0.0011306	563.2847161840823	77.725	0.24412	77.78	77.597	77.841	0.055412					11	8	2	0	0	0	0.24739	1	20011	20011		13.508	4.9146	1	53358	+		34958	14764	20492	20493	42452	42452					-0.0018598062217733968
PYVRNTPQF	9	Unmodified	_PYVRNTPQF_					0	0	0		ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2907104492188	2	561.290548	1120.56654	0.04505	2.5286E-05	-0.078956	-4.4317E-05	-0.033905	-1.9031E-05	561.2903255064198	39.837	0.80421	39.837	39.454	40.259	0					60	28	3	0	0	0	0.0059482	1	8468	8468		85.642	45.684	1	316450			34959	352	20493	20494	42453	42453					0.011082611918027396
PYVRNTPQF	9	Unmodified	_PYVRNTPQF_					0	0	0		ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2908325195312	2	561.290548	1120.56654	0.35772	0.00020079	-0.19095	-0.00010718	0.16677	9.3608E-05	561.2903187560441	39.595	0.73535	39.688	39.416	40.151	0.09267					49	25	3	0	0	0	0.019245	1	8412	8412		65.235	32.93	1	300510			34960	352	20493	20494	42454	42454					0.011082611918027396
PYVRNTPQF	9	Unmodified	_PYVRNTPQF_					0	0	0		ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2905883789062	2	561.290548	1120.56654	0.24573	0.00013793	-0.20703	-0.00011621	0.038695	2.1719E-05	561.2903321341673	39.564	0.69034	39.664	39.372	40.062	0.099407					51	24	3	0	0	0	0.066761	1	8354	8354		56.177	34.43	1	379910			34961	352	20493	20494	42455	42455					0.011082611918027396
PYVTTLETL	9	Unmodified	_PYVTTLETL_					0	0	0		nc|ENSG00000185813|Q99447-2|PCYT2;nc|ENSG00000185813|Q99447-4|PCYT2;ENSG00000185813|ENST00000538936|PCYT2;nc|ENSG00000185813|Q99447-3|PCYT2	nc|ENSG00000185813|Q99447-2|PCYT2	nc|ENSG00000185813|Q99447-2|PCYT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3215942382812	2	518.78169	1035.54883	0.59276	0.00030751	-1.4692	-0.00076219	-0.87643	-0.00045468	518.7817931574367	66.24	0.24899	66.24	66.068	66.317	0					14	8	2	0	0	0	0.16284	1	16561	16561		24.021	4.7636	1	85887			34962	7559	20494	20495	42456	42456					0.032475011463020564
PYVVSYYRK	9	Unmodified	_PYVVSYYRK_					0	0	0			REV__ENSG00000139278|ENST00000266659|GLIPR1	REV__ENSG00000139278|ENST00000266659|GLIPR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.302001953125	2	587.816399	1173.61824	0.2455	0.00014431	-0.79914	-0.00046975	-0.55364	-0.00032544	587.8161982144574	35.435	0.49793	35.511	35.318	35.816	0.075306					27	17	2	0	0	0	0.21303	1	7135	7135		21.747	4.8044	1	459980	+		34963	15978	20495	20496	42457	42457					0.03838004885687951
PYWSKLVV	8	Unmodified	_PYWSKLVV_					0	0	0			REV__ENSG00000172689|ENST00000308287|MS4A10	REV__ENSG00000172689|ENST00000308287|MS4A10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2839050292969	2	496.284203	990.553853	0.24481	0.0001215	-0.87857	-0.00043602	-0.63376	-0.00031452	496.283702125029	43.066	0.53842	43.151	42.846	43.384	0.084793					36	19	2	0	0	0	0.32038	1	9424	9424		28.487	0	1	1046200	+		34964	17727	20496	20497	42458	42458					0.058198497995590515
PYYLRVRRK	9	Unmodified	_PYYLRVRRK_					0	0	0		ENST00000513152.1_1_5:40764586-40764871:-|nuORF;ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1	ENST00000513152.1_1_5:40764586-40764871:-|nuORF	ENST00000513152.1_1_5:40764586-40764871:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.200439453125	3	417.58753	1249.74076	-0.16169	-6.7518E-05	-0.47176	-0.000197	-0.63345	-0.00026452	417.5869769040232	27.274	0.43839	27.274	27.035	27.474	0					27	14	3	0	0	0	0.25949	1	4586	4586		4.897	0.36815	1	77568			34965	3623	20497	20498	42459	42459					0.12587886407800397
PYYLRVRRK	9	Unmodified	_PYYLRVRRK_					0	0	0		ENST00000513152.1_1_5:40764586-40764871:-|nuORF;ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1	ENST00000513152.1_1_5:40764586-40764871:-|nuORF	ENST00000513152.1_1_5:40764586-40764871:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	417.58753	1249.74076	0.012224	5.1044E-06	-1.2456	-0.00052013	-1.2333	-0.00051502	417.5869576263067	27.308	0.42922	27.297	27.07	27.499	-0.01156	0.011214	-0.0001618	NaN	8.1555	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84582			34966	3623	20497	20498							0.12587886407800397
PYYPEQRH	8	Unmodified	_PYYPEQRH_					0	0	0			REV__ENSG00000235272|ENST00000444122|RAMACL	REV__ENSG00000235272|ENST00000444122|RAMACL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.78857421875	2	545.259248	1088.50394	0.63814	0.00034795	2.2944	0.001251	2.9325	0.001599	545.2604500259314	16.789	0.29566	16.727	16.674	16.969	-0.062532					15	10	2	0	0	0	0.34434	1	1443	1443		0.79363	0.10326	1	54911	+		34967	17526	20498	20499	42460	42460					-0.03676884876381337
PYYPSPGVLF	10	Unmodified	_PYYPSPGVLF_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.2925415039062	2	570.292225	1138.5699	0.40198	0.00022924	0.097799	5.5774E-05	0.49978	0.00028502	570.2922156621543	79.179	1.3226	79.179	78.802	80.124	0					127	52	4	0	0	0	0.0065708	1	20491	20491		104.8	77.17	1	1460800			34968	3322	20499	20500	42461	42461					0.006155112458145595
PYYPSPGVLF	10	Unmodified	_PYYPSPGVLF_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2926025390625	2	570.292225	1138.5699	0.49786	0.00028393	-0.094088	-5.3658E-05	0.40377	0.00023027	570.2921049964705	79.114	1.1827	79.176	78.896	80.079	0.061417					147	49	4	0	0	0	0.0065708	1	20463	20463		104.8	83.053	1	1465400			34969	3322	20499	20500	42462	42462					0.006155112458145595
PYYPSPGVLF	10	Unmodified	_PYYPSPGVLF_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.292236328125	2	570.292225	1138.5699	0.45612	0.00026012	0.094291	5.3773E-05	0.55041	0.0003139	570.2922085357468	79.208	1.2244	79.179	78.915	80.14	-0.028931					132	48	4	0	0	0	0.0074981	1	20596	20596		85.357	66.1	1	1528000			34970	3322	20499	20500	42463	42463					0.006155112458145595
PYYSKFILI	9	Unmodified	_PYYSKFILI_					0	0	0		ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3259887695312	2	572.326068	1142.63758	0.25849	0.00014794	0.10794	6.1776E-05	0.36643	0.00020972	572.3259639866351	70.403	1.0245	70.403	70.074	71.098	0					102	36	4	0	0	0	0.00045155	2	17807	17807;17859		129.77	74.27	1	2935100			34971	5878	20500	20501	42464;42465	42464					0.07196961176623518
PYYSKFILI	9	Unmodified	_PYYSKFILI_					0	0	0		ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.3262329101562	2	572.326068	1142.63758	0.38153	0.00021836	-0.082483	-4.7207E-05	0.29905	0.00017115	572.3258961221103	70.401	1.0521	70.462	70.127	71.179	0.060783					112	37	4	0	0	0	9.2305E-05	3	17840	17795;17840;17883		142.08	86.577	1	2954400			34972	5878	20500	20501	42466;42467;42468	42467					0.07196961176623518
PYYSKFILI	9	Unmodified	_PYYSKFILI_					0	0	0		ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	ENSG00000164815|ENST00000297431|ORC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3262329101562	2	572.326068	1142.63758	0.30541	0.0001748	0.048369	2.7683E-05	0.35378	0.00020248	572.3259550023464	70.455	1.3484	70.43	70.16	71.509	-0.024872					134	48	4	0	0	0	2.942E-07	4	17861	17811;17861;17906;17959		168.66	113.16	1	3821600			34973	5878	20500	20501	42469;42470;42471;42472	42470					0.07196961176623518
QAADILLYK	9	Unmodified	_QAADILLYK_					0	0	0		nc|ENSG00000116874|Q9UGM6-2|WARS2;ENSG00000116874|ENST00000235521|WARS2	nc|ENSG00000116874|Q9UGM6-2|WARS2	nc|ENSG00000116874|Q9UGM6-2|WARS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.255859375	2	517.797675	1033.5808	0.70567	0.00036539	-0.83508	-0.0004324	-0.12941	-6.7009E-05	517.7974217434465	48.041	0.49917	48.088	47.919	48.418	0.047523					33	18	3	0	0	0	0.24636	1	10997	10997		11.495	5.2889	1	860950			34974	2760	20501	20502	42473	42473					0.06534913620112093
QAAIVSKI	8	Unmodified	_QAAIVSKI_					0	0	0		nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	nc|ENSG00000122786|Q05682-4|CALD1	nc|ENSG00000122786|Q05682-4|CALD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.9078063964844	2	415.260728	828.506903	0.072423	3.0074E-05	-1.0416	-0.00043253	-0.96916	-0.00040245	415.26023756597976	33.322	0.58089	33.389	33.158	33.739	0.0667					37	20	2	0	0	0	0.32196	1	6463	6463		20.415	8.7742	1	686800			34975	3071	20502	20503	42474	42474					0.08578990248417995
QAARHVPHL	9	Unmodified	_QAARHVPHL_					0	0	0			REV__ENST00000403952.3_2_7:808720-814797:+|nuORF	REV__ENST00000403952.3_2_7:808720-814797:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3116455078125	2	514.79105	1027.56755	0.208	0.00010708	-0.9552	-0.00049173	-0.7472	-0.00038465	514.7907636584496	24.76	0.52285	24.704	24.315	24.837	-0.055931					28	17	2	0	0	0	0.26145	1	3752	3752		2.0598	0	1	81442	+		34976	20724	20503	20504	42475	42475					0.054865203513600136
QAARHVPHL	9	Unmodified	_QAARHVPHL_					0	0	0			REV__ENST00000403952.3_2_7:808720-814797:+|nuORF	REV__ENST00000403952.3_2_7:808720-814797:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	514.79105	1027.56755	-0.041313	-2.1268E-05	-0.52952	-0.00027259	-0.57083	-0.00029386	514.7908325576341	24.674	0.43637	24.643	24.485	24.922	-0.031408	-0.010797	0.00017559	NaN	2.0598	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82888	+		34977	20724	20503	20504							0.054865203513600136
QAARSILGK	9	Unmodified	_QAARSILGK_					0	0	0		nc|ENSG00000292373|Q01113-3|IL9R	nc|ENSG00000292373|Q01113-3|IL9R	nc|ENSG00000292373|Q01113-3|IL9R	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2877197265625	2	472.287808	942.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.774	1	20.774	20.274	21.274	0								0	0	0	0.16485	1	2640	2640		31.268	1.4278	1				34978	13017	20504	20505	42476	42476					0.08748582400005489
QAARSILGK	9	Unmodified	_QAARSILGK_					0	0	0		nc|ENSG00000292373|Q01113-3|IL9R	nc|ENSG00000292373|Q01113-3|IL9R	nc|ENSG00000292373|Q01113-3|IL9R	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.28765869140625	2	472.287808	942.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.969	1	20.859	20.359	21.359	-0.11003								0	0	0	0.19189	1	2701	2701		24.991	1.2012	1				34979	13017	20504	20505	42477	42477					0.08748582400005489
QAASPQSKL	9	Unmodified	_QAASPQSKL_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7878723144531	2	465.256174	928.497795	0.46173	0.00021482	-0.75122	-0.00034951	-0.28949	-0.00013469	465.25576004076095	50.677	0.21811	50.722	50.602	50.82	0.044888					10	7	2	0	0	0	0.22674	1	11767	11767		22.736	0	1	112140	+		34980	17710	20505	20506	42478	42478					0.03068596892092046
QAEIDIEHF	9	Unmodified	_QAEIDIEHF_					0	0	0			REV__nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2	REV__nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.289794921875	2	551.264196	1100.51384	0.8243	0.0004544	-0.99393	-0.00054792	-0.16964	-9.3515E-05	551.2635732924936	78.231	1.3529	78.2	77.898	79.251	-0.030426					88	53	2	0	0	0	0.25526	1	20348	20348		7.9102	3.5809	1	187670	+		34981	13910	20506	20507	42479	42479					-0.03239741661673179
QAEQLAADTY	10	Unmodified	_QAEQLAADTY_					0	0	0			REV__ENSG00000109111|ENST00000314616|SUPT6H	REV__ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2799072265625	2	555.259111	1108.50367	0.42079	0.00023365	-2.8168	-0.001564	-2.396	-0.0013304	555.258619049684	44.37	2.4707	44.37	43.932	46.402	0					333	90	6	0	0	0	0.24105	1	10270	10270		27.629	6.0918	1	139980000	+		34982	14629	20507	20508	42480	42480					-0.046243493869269514
QAERPRLCVF	10	Unmodified	_QAERPRLCVF_					0	0	0		ENST00000355296.8_1_16:4475992-4484397:+|nuORF;nc|ENSG00000103423|Q96EY1-3|DNAJA3	ENST00000355296.8_1_16:4475992-4484397:+|nuORF	ENST00000355296.8_1_16:4475992-4484397:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.823486328125	2	609.824232	1217.63391	0.20806	0.00012688	-1.1575	-0.00070587	-0.94943	-0.00057898	610.3244164602702	76.253	0.48014	76.253	76.021	76.501	0					38	16	3	0	0	0	0.34155	1	19619	19619		16.149	3.1066	1	375340			34983	9608	20508	20509	42481	42481					0.03379968131093847
QAERRRRE	8	Unmodified	_QAERRRRE_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.8142700195312	2	550.80522	1099.59589	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.185	1	23.14	22.64	23.64	-0.044867								0	0	0	0.34492	1	3369	3369		16.942	2.104	1		+		34984	15501	20509	20510	42482	42482					0.05007218260652735
QAETYLTK	8	Unmodified	_QAETYLTK_					0	0	0		ALMS1|p.V2785Sfs*8|1|0.2|ENSG00000116127|chr2:73490309-73490310|-/A|frameshift_variant;nc|ENSG00000116127|Q8TCU4-3|ALMS1;nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1	ALMS1|p.V2785Sfs*8|1|0.2|ENSG00000116127|chr2:73490309-73490310|-/A|frameshift_variant	ALMS1|p.V2785Sfs*8|1|0.2|ENSG00000116127|chr2:73490309-73490310|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.250244140625	2	477.250557	952.486562	0.076135	3.6335E-05	-0.57628	-0.00027503	-0.50015	-0.0002387	477.2503347983224	15.875	0.75091	15.812	15.547	16.298	-0.062533					59	25	4	0	0	0	0.45169	1	1236	1236		5.2307	0	1	341320			34985	28	20510	20511	42483	42483					0.008417747979365231
QAFAQVFNK	9	Unmodified	_QAFAQVFNK_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8324584960938	2	526.779816	1051.54508	0.33251	0.00017516	-0.21372	-0.00011258	0.11879	6.2577E-05	526.7796454199827	42.468	0.7633	42.553	42.295	43.058	0.085197					56	27	3	0	0	0	0.082808	1	9298	9298		58.679	22.635	1	1284100			34986	1193	20511	20512	42484	42484					0.021368761630810695
QAFAQVFNK	9	Unmodified	_QAFAQVFNK_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8324584960938	2	526.779816	1051.54508	0.46032	0.00024249	-0.33868	-0.00017841	0.12164	6.4076E-05	526.7795860989265	42.434	0.75293	42.525	42.203	42.956	0.091362					60	26	3	0	0	0	0.16284	1	9290	9290		37.974	7.7492	1	1401300			34987	1193	20511	20512	42485	42485					0.021368761630810695
QAFAQVFNK	9	Unmodified	_QAFAQVFNK_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	526.779816	1051.54508	0.40796	0.0002149	-0.17937	-9.4486E-05	0.22859	0.00012042	526.7796147305577	42.77	0.79204	42.77	42.465	43.257	0	0.1535	7.5043E-05	NaN	65.235	65	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1416100			34988	1193	20511	20512							0.021368761630810695
QAFEQSSNLK	10	Unmodified	_QAFEQSSNLK_					0	0	0			REV__ENST00000538770.1_1_11:113567578-113576977:-|nuORF	REV__ENST00000538770.1_1_11:113567578-113576977:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7984619140625	2	576.288202	1150.56185	0.50585	0.00029152	-2.8437	-0.0016388	-2.3378	-0.0013473	576.789215860026	47.335	0.36456	47.335	47.214	47.578	0					24	12	3	0	0	0	0.31581	1	10795	10795		11.495	8.2134	1	291410	+		34989	17332	20512	20513	42486	42486					-0.0074066774163839
QAFEQSSNLK	10	Unmodified	_QAFEQSSNLK_					0	0	0			REV__ENST00000538770.1_1_11:113567578-113576977:-|nuORF	REV__ENST00000538770.1_1_11:113567578-113576977:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7984619140625	2	576.288202	1150.56185	0.36135	0.00020824	0.0018887	1.0884E-06	0.36324	0.00020933	576.2876972382809	47.328	0.42941	47.38	47.114	47.544	0.052574					28	15	3	0	0	0	0.31237	1	10784	10784		16.149	4.5088	1	334810	+		34990	17332	20512	20513	42487	42487					-0.0074066774163839
QAFILMHLL	9	Unmodified	_QAFILMHLL_					0	0	0		ENST00000463792.5_1_2:220099420-220100035:+|nuORF;ENST00000477479.5_1_2:220099420-220101164:+|nuORF	ENST00000463792.5_1_2:220099420-220100035:+|nuORF	ENST00000463792.5_1_2:220099420-220100035:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3126831054688	2	543.312438	1084.61032	0.11623	6.3147E-05	0.48549	0.00026377	0.60172	0.00032692	543.3121946517082	12.136	0.20837	12.136	12.011	12.219	0					13	10	2	0	0	0	0.34374	1	46	46		2.3027	0.4585	1	21440			34991	10773	20513	20514	42488	42488					0.07140154364583395
QAFILMHLL	9	Unmodified	_QAFILMHLL_					0	0	0		ENST00000463792.5_1_2:220099420-220100035:+|nuORF;ENST00000477479.5_1_2:220099420-220101164:+|nuORF	ENST00000463792.5_1_2:220099420-220100035:+|nuORF	ENST00000463792.5_1_2:220099420-220100035:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	543.312438	1084.61032	0.28656	0.00015569	0.8898	0.00048344	1.1764	0.00063913	543.3124855958775	12.16	0.22668	12.063	11.979	12.206	-0.096607	-0.0315	-2.0686E-05	NaN	2.3027	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24154			34992	10773	20513	20514							0.07140154364583395
QAFILMHLL	9	Unmodified	_QAFILMHLL_					0	0	0		ENST00000463792.5_1_2:220099420-220100035:+|nuORF;ENST00000477479.5_1_2:220099420-220101164:+|nuORF	ENST00000463792.5_1_2:220099420-220100035:+|nuORF	ENST00000463792.5_1_2:220099420-220100035:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.312438	1084.61032	0.14203	7.7167E-05	1.1615	0.00063106	1.3035	0.00070823	543.3126261576178	12.152	0.19331	12.084	12.032	12.226	-0.06806	-0.010166	0.00027456	NaN	2.3027	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28300			34993	10773	20513	20514							0.07140154364583395
QAFKECPQLKL	11	Unmodified	_QAFKECPQLKL_					0	0	0		CD180|p.E423K|1|0.29|ENSG00000134061|chr5:67183576-67183576|C/T|missense_variant	CD180|p.E423K|1|0.29|ENSG00000134061|chr5:67183576-67183576|C/T|missense_variant	CD180|p.E423K|1|0.29|ENSG00000134061|chr5:67183576-67183576|C/T|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.5792236328125	3	435.572557	1303.69584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.48	1	22.435	21.935	22.935	-0.044867								0	0	0	0.36232	1	3155	3155		5.5233	1.1171	1				34994	98	20514	20515	42489	42489					0.056142747595913534
QAFKNILVDEM	11	Unmodified	_QAFKNILVDEM_					0	0	0		nc|ENSG00000130518|Q9H0B3-2|IQCN;nc|ENSG00000130518|Q9H0B3-5|IQCN;nc|ENSG00000130518|Q9H0B3|IQCN;ENSG00000130518|ENST00000392413|IQCN	nc|ENSG00000130518|Q9H0B3-2|IQCN	nc|ENSG00000130518|Q9H0B3-2|IQCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.9211730957031	3	436.560317	1306.65912	-0.14261	-6.2257E-05	0.7584	0.00033109	0.6158	0.00026883	436.89454591569563	19.183	0.16841	19.067	18.947	19.116	-0.11592					9	5	3	0	0	0	0.3333	1	2152	2152		1.3296	0.11481	1	26350			34995	3481	20515	20516	42490	42490					0.01805978143011089
QAFQKNLPKST	11	Unmodified	_QAFQKNLPKST_					0	0	0		ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2345275878906	3	421.234822	1260.68264	-0.10825	-4.56E-05	0.074288	3.1293E-05	-0.033965	-1.4307E-05	421.2349836407016	19.979	0.37926	19.979	19.713	20.092	0					27	13	3	0	0	0	0.45202	1	2403	2403		4.4062	0.81348	1	88385			34996	3665	20516	20517	42491	42491					0.0627215997183157
QAGTAQRDFHL	11	Unmodified	_QAGTAQRDFHL_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.90777587890625	3	415.210788	1242.61053	0.43656	0.00018127	0.40059	0.00016633	0.83715	0.00034759	415.54625263121403	33.367	0.24329	33.434	33.323	33.566	0.06636					12	8	2	0	0	0	0.32951	1	6455	6455		1.1098	0.78048	1	48968			34997	4808	20517	20518	42492	42492					-0.0010675438184080122
QAHDSRFR	8	Unmodified	_QAHDSRFR_					0	0	0		ENSG00000181544|ENST00000650831|FANCB	ENSG00000181544|ENST00000650831|FANCB	ENSG00000181544|ENST00000650831|FANCB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.75299072265625	2	508.754664	1015.49478	0.39042	0.00019863	-1.4858	-0.0007559	-1.0954	-0.00055727	508.7538172757839	20.691	0.58978	20.691	20.235	20.825	0					34	20	2	0	0	0	0.42077	1	2630	2630		15.847	0	1	125640			34998	7239	20518	20519	42493	42493					-0.0123523344205978
QAHDSRFR	8	Unmodified	_QAHDSRFR_					0	0	0		ENSG00000181544|ENST00000650831|FANCB	ENSG00000181544|ENST00000650831|FANCB	ENSG00000181544|ENST00000650831|FANCB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.76251220703125	2	508.754664	1015.49478	0.41463	0.00021095	-3.2655	-0.0016613	-2.8509	-0.0014504	508.75319567754235	21.032	0.45087	20.979	20.835	21.286	-0.052912					26	15	3	0	0	0	0.37937	1	2716	2716		21.747	0	1	97767			34999	7239	20518	20519	42494	42494					-0.0123523344205978
QAHPKMKVAW	10	Unmodified	_QAHPKMKVAW_					0	0	0			REV__ENST00000395473.6_2_17:25976035-25976554:+|nuORF	REV__ENST00000395473.6_2_17:25976035-25976554:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.3251953125	2	598.323868	1194.63318	0.35999	0.00021539	2.033	0.0012164	2.393	0.0014318	598.3251684359157	96.466	0.5689	96.536	96.252	96.821	0.070465					106	57	3	0	0	0	0.39935	1	25799	25799		3.5965	0.60125	1	113840	+		35000	20634	20519	20520	42495	42495					0.04365173482051432
QAHREPHAA	9	Unmodified	_QAHREPHAA_					0	0	0			REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF	REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7530517578125	2	508.754664	1015.49478	0.56149	0.00028566	-1.7927	-0.00091202	-1.2312	-0.00062636	508.7537797747307	20.756	0.69074	20.646	20.259	20.95	-0.11003					50	24	3	0	0	0	0.24467	1	2677	2677		17.113	1.2657	1	154380	+		35001	19604	20520	20521	42496	42496					-0.012352334420711486
QAHRLVSP	8	Unmodified	_QAHRLVSP_					0	0	0			REV__ENSG00000164002|ENST00000415550|EXO5	REV__ENSG00000164002|ENST00000415550|EXO5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2168884277344	2	454.259051	906.503549	-0.016201	-7.3595E-06	-1.7135	-0.00077838	-1.7297	-0.00078574	454.2581555017371	17.889	0.44029	17.772	17.545	17.985	-0.11739					25	14	2	0	0	0	0.34353	1	1809	1809		4.756	0	1	51854	+		35002	17112	20521	20522	42497	42497					0.04655740194414193
QAIDENQAK	9	Unmodified	_QAIDENQAK_					0	0	0			REV__CON__P04264	REV__CON__P04264	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7633361816406	2	508.753995	1015.49344	0.56149	0.00028566	-0.47827	-0.00024332	0.08322	4.2339E-05	508.7537797747307	20.756	0.69074	20.646	20.259	20.95	-0.11003					50	24	3	0	0	0	0.24467	1	2702	2702		17.113	0	1	154380	+	+	35003	13252	20522	20523	42498	42498					-0.0136891232148173
QAIKGVYS	8	Unmodified	_QAIKGVYS_					0	0	0		PTPDC1|p.R743Kfs*9|1|0.72|ENSG00000158079|chr9:94107900-94107901|-/A|frameshift_variant;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1;nc|ENSG00000158079|A2A3K4|PTPDC1	PTPDC1|p.R743Kfs*9|1|0.72|ENSG00000158079|chr9:94107900-94107901|-/A|frameshift_variant	PTPDC1|p.R743Kfs*9|1|0.72|ENSG00000158079|chr9:94107900-94107901|-/A|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.2547607421875	2	433.242535	864.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.779	1	95.857	95.357	96.357	0.077408								0	0	0	0.37664	1	25588	25588		2.5775	0	1				35004	5338	20523	20524	42499	42499					0.03286113351714448
QAINAPPKLK	10	Unmodified	_QAINAPPKLK_					0	0	0			REV__SBNO1|p.N1108Efs*3|1|0.22|ENSG00000139697|chr12:123309827-123309830|TATT/-|frameshift_variant	REV__SBNO1|p.N1108Efs*3|1|0.22|ENSG00000139697|chr12:123309827-123309830|TATT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2611083984375	2	540.332216	1078.64988	0.55675	0.00030083	0.56906	0.00030748	1.1258	0.00060831	540.3326266332837	20.591	0.31416	20.591	20.395	20.709	0					14	10	2	0	0	0	0.31926	1	2592	2592		5.7319	0.43497	1	65412	+		35005	16002	20524	20525	42500	42500					0.1136999763964468
QAKFYESI	8	Unmodified	_QAKFYESI_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.77728271484375	2	493.2531	984.491647	0.47623	0.0002349	-0.18564	-9.1569E-05	0.29059	0.00014333	493.25278241626336	39.087	0.64326	39.186	38.895	39.539	0.099403					46	22	3	0	0	0	0.33245	1	8123	8123		19.439	0	1	509090			35006	3792	20525	20526	42501	42501					-0.0012192133942789951
QAKILGVLLRE	11	Unmodified	_QAKILGVLLRE_					0	0	0			REV__nc|ENSG00000204176|Q9BQS2-4|SYT15	REV__nc|ENSG00000204176|Q9BQS2-4|SYT15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.9324645996094	3	413.930962	1238.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.553	1	39.653	39.153	40.153	0.099407								0	0	0	0.37868	1	8347	8347		1.9275	0.71267	1		+		35007	18922	20526	20527	42502	42502					0.161222002823024
QAKLVTATPHL	11	Unmodified	_QAKLVTATPHL_					0	0	0			REV__ENST00000564967.1_1_16:29708453-29708729:+|nuORF	REV__ENST00000564967.1_1_16:29708453-29708729:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.84619140625	2	589.84823	1177.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.07	1	113.07	112.57	113.57	0								0	0	0	0.37382	1	29375	29375		2.9952	0.69251	1		+		35008	14374	20527	20528	42503	42503					0.10017365322801197
QAKQIQNSVFQ	11	Unmodified	_QAKQIQNSVFQ_					0	0	0		nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8883361816406	3	430.89821	1289.6728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.747	1	22.702	22.202	23.202	-0.044867								0	0	0	0.37111	1	3236	3236		3.5927	0.23695	1				35009	1792	20528	20529	42504	42504					0.039549719664591976
QALATVVKLS	10	Unmodified	_QALATVVKLS_					0	0	0			REV__ENSG00000178623|ENST00000407714|GPR35	REV__ENSG00000178623|ENST00000407714|GPR35	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3299560546875	2	515.318774	1028.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.111	1	15.997	15.497	16.497	-0.11434								0	0	0	0.36581	1	1231	1231		8.1555	3.2585	1		+		35010	18043	20529	20530	42505	42505					0.1098288902846889
QALEKCAQI	9	Unmodified	_QALEKCAQI_					0	0	0			REV__nc|ENSG00000156261|P50990-2|CCT8	REV__nc|ENSG00000156261|P50990-2|CCT8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2767028808594	2	502.265684	1002.51682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.224	1	69.224	68.724	69.724	0								0	0	0	0.20238	1	17482	17482		21.747	6.9084	1		+		35011	16739	20530	20531	42506	42506					0.015658101914937106
QALEKCAQI	9	Unmodified	_QALEKCAQI_					0	0	0			REV__nc|ENSG00000156261|P50990-2|CCT8	REV__nc|ENSG00000156261|P50990-2|CCT8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2767639160156	2	502.265684	1002.51682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.107	1	69.088	68.588	69.588	-0.019157								0	0	0	0.20238	1	17434	17434		21.747	5.8995	1		+		35012	16739	20530	20531	42507	42507					0.015658101914937106
QALEKCAQI	9	Unmodified	_QALEKCAQI_					0	0	0			REV__nc|ENSG00000156261|P50990-2|CCT8	REV__nc|ENSG00000156261|P50990-2|CCT8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2766418457031	2	502.265684	1002.51682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.252	1	69.23	68.73	69.73	-0.022087								0	0	0	0.20238	1	17477	17477		21.747	6.9084	1		+		35013	16739	20530	20531	42508	42508					0.015658101914937106
QALEKCAQI	9	Unmodified	_QALEKCAQI_					0	0	0			REV__nc|ENSG00000156261|P50990-2|CCT8	REV__nc|ENSG00000156261|P50990-2|CCT8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2768249511719	2	502.265684	1002.51682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.399	1	69.377	68.877	69.877	-0.022087								0	0	0	0.20238	1	17522	17522		21.747	6.9084	1		+		35014	16739	20530	20531	42509	42509					0.015658101914937106
QALEVLKI	8	Unmodified	_QALEVLKI_					0	0	0		ENSG00000124217|ENST00000244051|MOCS3	ENSG00000124217|ENST00000244051|MOCS3	ENSG00000124217|ENST00000244051|MOCS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.77667236328125	2	457.289485	912.564418	0.39615	0.00018115	-0.1565	-7.1564E-05	0.23965	0.00010959	457.28948568373096	55.071	0.58657	55.139	54.945	55.532	0.067646					36	21	2	0	0	0	0.069188	2	13136	13136;13187		69.105	11.634	1	742900			35015	3145	20531	20532	42510;42511	42510					0.10463832454001931
QALEVLKI	8	Unmodified	_QALEVLKI_					0	0	0		ENSG00000124217|ENST00000244051|MOCS3	ENSG00000124217|ENST00000244051|MOCS3	ENSG00000124217|ENST00000244051|MOCS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7767639160156	2	457.289485	912.564418	0.34334	0.000157	0.026139	1.1953E-05	0.36948	0.00016896	457.28958961154035	55.173	0.48087	55.154	55.003	55.484	-0.019077					41	17	3	0	0	0	0.029711	2	13169	13169;13220		88.954	7.3408	1	819750			35016	3145	20531	20532	42512;42513	42512					0.10463832454001931
QALLDFVTV	9	Unmodified	_QALLDFVTV_					0	0	0			REV__ENST00000511465.1_1_4:185263030-185268908:-|nuORF	REV__ENST00000511465.1_1_4:185263030-185268908:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.8105163574219	2	503.2844	1004.55425	0.36177	0.00018207	-1.3116	-0.0006601	-0.94981	-0.00047803	503.28358027670663	68.154	0.2589	68.135	67.938	68.197	-0.019157					15	9	2	0	0	0	0.22061	1	17159	17159		24.021	3.5669	1	143110	+		35017	21811	20532	20533	42514	42514					0.05215224728760859
QALQFTTLLT	10	Unmodified	_QALQFTTLLT_					0	0	0		ENSG00000100842|ENST00000216733|EFS;nc|ENSG00000100842|O43281-2|EFS;nc|ENSG00000100842|O43281-3|EFS	ENSG00000100842|ENST00000216733|EFS	ENSG00000100842|ENST00000216733|EFS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.3346557617188	2	568.321514	1134.62847	0.28585	0.00016245	1.5194	0.00086349	1.8052	0.0010259	568.3223772844756	48.682	0.37976	48.714	48.549	48.929	0.032043					25	13	3	0	0	0	0.2811	1	11187	11187		22.736	2.3217	1	485450			35018	1636	20533	20534	42515	42515					0.06654567820282864
QALRYIQT	8	Unmodified	_QALRYIQT_					0	0	0		AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247027247-247061635:-|nuORF;ENST00000420969.1_1_2:162360026-162361742:-|nuORF	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENST00000420969.1_1_2:162360026-162361742:-|nuORF	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2288818359375	2	496.779816	991.545079	0.21163	0.00010513	0.94913	0.00047151	1.1608	0.00057664	496.78034326183257	33.812	0.16874	33.878	33.739	33.907	0.066704					6	5	2	0	0	0	0.34039	1	6578	6578		15.847	1.0089	1	49873			35019	22;10368	20534	20535	42516	42516					0.04896876163093111
QALSIQTPFKS	11	Unmodified	_QALSIQTPFKS_					0	0	0			REV__nc|ENSG00000122779|O15164-2|TRIM24	REV__nc|ENSG00000122779|O15164-2|TRIM24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.3377685546875	2	610.337695	1218.66084	0.2986	0.00018224	-0.023117	-1.4109E-05	0.27548	0.00016814	610.3377054623362	66.962	0.53342	67.046	66.826	67.36	0.083824					38	18	3	0	0	0	0.35173	1	16790	16790		27.223	0	1	385680	+		35020	15172	20535	20536	42517	42517					0.06025355223300721
QALVCTVSRV	10	Unmodified	_QALVCTVSRV_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.815673828125	2	538.300059	1074.58556	0.13903	7.4842E-05	1.6071	0.00086508	1.7461	0.00093993	538.3012149427723	12.917	0.49423	12.917	12.815	13.309	0					25	17	2	0	0	0	0.38027	1	277	277		7.1017	1.8048	1	80096	+		35021	18580	20536	20537	42518	42518					0.051254744912057504
QALYLLEFF	9	Unmodified	_QALYLLEFF_					0	0	0		ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.791015625	2	572.307875	1142.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.15	1	114.13	113.63	114.63	-0.019096								0	0	0	0.26334	1	29653	29653		2.0598	0	1				35022	5626	20537	20538	42519	42519					0.035600842798885424
QAPDWHLKMPK	11	Unmodified	_QAPDWHLKMPK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7790832519531	3	450.904419	1349.69143	-0.14318	-6.4563E-05	1.4271	0.00064347	1.2839	0.00057891	450.9051789776083	14.119	0.34941	14.053	13.802	14.152	-0.066068					16	11	2	0	0	0	0.33274	1	608	608		3.5927	2.0004	1	87091			35023	3189	20538	20539	42520	42520					0.030568103366704236
QAPDWHLKMPK	11	Unmodified	_QAPDWHLKMPK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	450.904419	1349.69143	-0.12618	-5.6894E-05	1.277	0.0005758	1.1508	0.00051891	450.90498482806964	14.01	0.31954	14.01	13.794	14.113	0	-0.023541	-0.00035413	NaN	3.5927	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45273			35024	3189	20538	20539							0.030568103366704236
QAPDWHLKMPK	11	Unmodified	_QAPDWHLKMPK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	450.904419	1349.69143	-0.1762	-7.9447E-05	1.8125	0.00081728	1.6363	0.00073783	451.23950051891023	14.143	0.34144	14.038	13.79	14.131	-0.10466	0.0043828	0.00037031	NaN	3.5927	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109400			35025	3189	20538	20539							0.030568103366704236
QAQEVFFLK	9	Unmodified	_QAQEVFFLK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000459659.1_1_3:33863478-33868168:+|nuORF	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3032836914062	2	555.303124	1108.5917	0.56767	0.00031523	-0.45533	-0.00025285	0.11234	6.2383E-05	555.3029872852396	54.014	0.49161	54.014	53.749	54.24	0					35	17	3	0	0	0	0.014206	1	12801	12801		72.968	43.886	1	1398100			35026	6434	20539	20540	42521	42521					0.04174315994373501
QAQEVFFLK	9	Unmodified	_QAQEVFFLK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000459659.1_1_3:33863478-33868168:+|nuORF	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3031616210938	2	555.303124	1108.5917	0.36556	0.00020299	-0.24115	-0.00013391	0.12441	6.9085E-05	555.303037018785	53.976	0.601	54.033	53.664	54.265	0.056259					38	22	3	0	0	0	0.018449	1	12781	12781		66.457	37.375	1	1296600			35027	6434	20539	20540	42522	42522					0.04174315994373501
QAQEVFFLK	9	Unmodified	_QAQEVFFLK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000459659.1_1_3:33863478-33868168:+|nuORF	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3031616210938	2	555.303124	1108.5917	0.41499	0.00023045	-0.34286	-0.00019039	0.072132	4.0055E-05	555.3030493796032	54.178	0.58189	54.162	53.833	54.415	-0.015919					41	20	3	0	0	0	0.0037449	1	12846	12846		96.367	54.527	1	1297600			35028	6434	20539	20540	42523	42523					0.04174315994373501
QAQHQIKEMK	10	Unmodified	_QAQHQIKEMK_					0	0	0		ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENST00000354752.5_1_9:99942307-99949763:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.90582275390625	3	414.220407	1239.63939	-0.32334	-0.00013393	-1.843	-0.00076342	-2.1664	-0.00089735	414.21986317924717	15.012	0.39522	15.012	14.759	15.154	0					19	13	2	0	0	0	0.32106	1	863	863		2.8433	0.56051	1	51141			35029	9599	20540	20541	42524	42524					0.029156469229064896
QAQLLAQK	8	Unmodified	_QAQLLAQK_					0	0	0			REV__ENST00000263511.8_1_1:16812982-16817701:-|nuORF	REV__ENST00000263511.8_1_1:16812982-16817701:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7790832519531	2	450.269084	898.523616	-0.14194	-6.3912E-05	-1.4743	-0.00066384	-1.6163	-0.00072775	450.2686643956175	13.981	0.4678	13.915	13.602	14.07	-0.066068					25	15	3	0	0	0	0.45169	1	608	608		5.2307	0	1	34297	+		35030	13607	20541	20542	42525	42525					0.07029491134369437
QAQLLAQK	8	Unmodified	_QAQLLAQK_					0	0	0			REV__ENST00000263511.8_1_1:16812982-16817701:-|nuORF	REV__ENST00000263511.8_1_1:16812982-16817701:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	450.269084	898.523616	-0.11886	-5.352E-05	-0.52833	-0.00023789	-0.64719	-0.00029141	450.2688514506035	13.898	0.22996	13.898	13.794	14.024	0	-0.0082695	0.0001376	NaN	5.2307	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28245	+		35031	13607	20541	20542							0.07029491134369437
QAQLLAQK	8	Unmodified	_QAQLLAQK_					0	0	0			REV__ENST00000263511.8_1_1:16812982-16817701:-|nuORF	REV__ENST00000263511.8_1_1:16812982-16817701:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	450.269084	898.523616	-0.14194	-6.3912E-05	-1.4743	-0.00066384	-1.6163	-0.00072775	450.2686643956175	13.981	0.4678	13.915	13.602	14.07	-0.066068	0.0082695	-0.0007143	NaN	5.2307	25	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34297	+		35032	13607	20541	20542							0.07029491134369437
QAQLRDSGP	9	Unmodified	_QAQLRDSGP_					0	0	0			REV__ENST00000371443.5_1_9:140445786-140446769:+|nuORF	REV__ENST00000371443.5_1_9:140445786-140446769:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7408142089844	2	486.24888	970.483208	0.38051	0.00018502	-0.081735	-3.9744E-05	0.29878	0.00014528	486.24894994125174	21.646	0.39062	21.546	21.244	21.635	-0.10034					17	13	2	0	0	0	0.2719	1	2894	2894		13.042	0.51092	1	32141	+		35033	20398	20542	20543	42526	42526					-0.0032147525605523697
QAQQQQQL	8	Unmodified	_QAQQQQQL_					0	0	0			REV__ENST00000475066.1_1_7:154759501-154775093:-|nuORF	REV__ENST00000475066.1_1_7:154759501-154775093:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7406921386719	2	486.24888	970.483208	0.30542	0.00014851	-0.42865	-0.00020843	-0.12322	-5.9917E-05	486.2486512380439	21.582	0.4542	21.533	21.207	21.661	-0.049377					19	15	2	0	0	0	0.34272	1	2862	2862		7.9102	0	1	47558	+		35034	16776	20543	20544	42527	42527					-0.003214752560438683
QAQWTVLKS	9	Unmodified	_QAQWTVLKS_					0	0	0		ENSG00000066185|ENST00000372565|ZMYND12	ENSG00000066185|ENST00000372565|ZMYND12	ENSG00000066185|ENST00000372565|ZMYND12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.8107299804688	2	530.792924	1059.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.044	1	25.044	24.544	25.544	0								0	0	0	0.23852	1	3933	3933		10.074	0.6908	1				35035	834	20544	20545	42528	42528					0.04389145334539535
QARFNRGL	8	Unmodified	_QARFNRGL_					0	0	0			REV__ENST00000445215.5_1_22:42980608-42980761:-|nuORF	REV__ENST00000445215.5_1_22:42980608-42980761:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2263488769531	2	481.26995	960.525347	0.10835	5.2145E-05	-1.4503	-0.00069797	-1.3419	-0.00064583	481.2691810379187	26.724	0.62222	26.724	26.469	27.091	0					29	21	2	0	0	0	0.34337	1	4527	4527		5.2307	0	1	127360	+		35036	21073	20545	20546	42529	42529					0.043505449429858345
QARKTASVL	9	Unmodified	_QARKTASVL_					0	0	0		ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1	ENSG00000171490|ENST00000571133|RSL1D1	ENSG00000171490|ENST00000571133|RSL1D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.29315185546875	2	487.293091	972.571629	0.06854	3.3399E-05	-0.11066	-5.3923E-05	-0.042117	-2.0524E-05	487.29300642236655	16.096	0.58015	15.981	15.781	16.362	-0.11434					40	19	3	0	0	0	0.23767	1	1225	1225		18.146	5.6148	1	235880			35037	6547	20546	20547	42530	42530					0.08424565054417599
QARKTASVL	9	Unmodified	_QARKTASVL_					0	0	0		ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1	ENSG00000171490|ENST00000571133|RSL1D1	ENSG00000171490|ENST00000571133|RSL1D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.2931213378906	2	487.293091	972.571629	0.16393	7.9881E-05	-0.11387	-5.5487E-05	0.05006	2.4394E-05	487.2929694106825	16.037	0.71207	15.975	15.73	16.442	-0.062534					45	24	3	0	0	0	0.11461	1	1204	1204		36.127	12.979	1	208280			35038	6547	20546	20547	42531	42531					0.08424565054417599
QARLPSLPKL	10	Unmodified	_QARLPSLPKL_					0	0	0			REV__ENSG00000123836|ENST00000367080|PFKFB2	REV__ENSG00000123836|ENST00000367080|PFKFB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3270874023438	2	561.853316	1121.69208	0.42497	0.00023877	-0.2546	-0.00014305	0.17037	9.5722E-05	561.8532238763695	42.218	0.39262	42.303	42.121	42.514	0.085197					23	13	2	0	0	0	0.31794	1	9218	9218		8.1555	1.0538	1	291060	+		35039	15200	20547	20548	42532	42532					0.13609973048028223
QARLWVNYYS	10	Unmodified	_QARLWVNYYS_					0	0	0			REV__ENSG00000145860|ENST00000424310|RNF145	REV__ENSG00000145860|ENST00000424310|RNF145	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.25469970703125	3	433.887533	1298.64077	-0.024371	-1.0574E-05	4.3111	0.0018705	4.2867	0.0018599	433.8883364912926	95.933	0.12597	95.929	95.853	95.979	-0.0038223					13	10	2	0	0	0	0.3213	1	25627	25627		1.9064	0.1641	1	51758	+		35040	16311	20548	20549	42533	42533					0.003396042833401225
QARLWVNYYS	10	Unmodified	_QARLWVNYYS_					0	0	0			REV__ENSG00000145860|ENST00000424310|RNF145	REV__ENSG00000145860|ENST00000424310|RNF145	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	433.887533	1298.64077	-0.15006	-6.5107E-05	6.0048	0.0026054	5.8548	0.0025403	434.225380595115	96.219	0.064743	96.297	96.248	96.313	0.077408	0.18357	0.0013355	NaN	1.9064	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34012	+		35041	16311	20548	20549							0.003396042833401225
QARWVLVF	8	Unmodified	_QARWVLVF_					0	0	0		ENST00000487860.1_1_2:101024970-101025051:-|nuORF	ENST00000487860.1_1_2:101024970-101025051:-|nuORF	ENST00000487860.1_1_2:101024970-101025051:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3081359863281	2	509.795269	1017.57599	0.44893	0.00022886	-3.5715	-0.0018207	-3.1225	-0.0015919	510.29780058676744	54.347	1.1407	54.331	53.865	55.006	-0.015923					122	40	5	0	0	0	0.43455	1	13062	13062		11.114	1.767	1	5306600			35042	11125	20549	20550	42534	42534					0.06790074267996715
QASAPAAQIS	10	Unmodified	_QASAPAAQIS_					0	0	0			REV__ENSG00000004776|ENST00000004982|HSPB6	REV__ENSG00000004776|ENST00000004982|HSPB6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.27630615234375	2	472.245806	942.47706	0.0080539	3.8034E-06	0.039879	1.8833E-05	0.047933	2.2636E-05	472.2456616240065	31.021	0.32748	31.049	30.841	31.168	0.027946					16	11	2	0	0	0	0.31207	1	5768	5768		17.443	6.6431	1	87386	+		35043	13334	20550	20551	42535	42535					0.0035200651241211744
QASVGEQGE	9	Unmodified	_QASVGEQGE_					0	0	0		ENST00000555641.1_1_12:57499966-57502061:-|nuORF;ENSG00000166888|ENST00000300134|STAT6	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.2561340332031	2	452.703971	903.393389	0.03582	1.6216E-05	-0.4787	-0.00021671	-0.44288	-0.00020049	452.7040932402405	22.711	0.64619	22.666	22.438	23.084	-0.044867					29	22	2	0	0	0	0.25323	1	3334	3334		10.074	0	1	45071			35044	6128	20551	20552	42536	42536					-0.06217149655276444
QASVGEQGE	9	Unmodified	_QASVGEQGE_					0	0	0		ENST00000555641.1_1_12:57499966-57502061:-|nuORF;ENSG00000166888|ENST00000300134|STAT6	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	452.703971	903.393389	-0.037669	-1.7053E-05	-1.1427	-0.0005173	-1.1804	-0.00053435	452.7036639919971	22.875	0.4793	22.787	22.403	22.883	-0.087608	0.038861	-8.6045E-05	NaN	18.146	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29386			35045	6128	20551	20552							-0.06217149655276444
QATNTIPLCI	10	Unmodified	_QATNTIPLCI_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.8603515625	2	537.286617	1072.55868	0.66471	0.00035714	-2.4544	-0.0013187	-1.7897	-0.00096158	537.2855134711477	53.545	0.71807	53.545	53.228	53.946	0					39	26	2	0	0	0	0.31039	1	12581	12581		18.146	0	1	393400	+		35046	15947	20552	20553	42537	42537					0.025303658800112316
QATQLPIIP	9	Unmodified	_QATQLPIIP_					0	0	0		ENSG00000174807|ENST00000311330|CD248;nc|ENSG00000174807|Q9HCU0-2|CD248	ENSG00000174807|ENST00000311330|CD248	ENSG00000174807|ENST00000311330|CD248	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7378234863281	2	490.792392	979.570232	0.17756	8.7143E-05	0.9739	0.00047798	1.1515	0.00056513	490.7929190844895	22.798	0.26397	22.753	22.553	22.817	-0.044867					14	8	2	0	0	0	0.25622	1	3220	3220		7.2892	0	1	26016			35047	6819	20553	20554	42538	42538					0.07962930965663872
QATTVGGLSP	10	Unmodified	_QATTVGGLSP_					0	0	0			REV__ENST00000436881.2_1_9:139742177-139742615:+|nuORF	REV__ENST00000436881.2_1_9:139742177-139742615:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.26422119140625	2	465.748182	929.481811	-0.17455	-8.1297E-05	0.071961	3.3516E-05	-0.10259	-4.7782E-05	465.74798449875203	17.587	0.22234	17.47	17.323	17.545	-0.11739					12	7	2	0	0	0	0.30958	1	1683	1683		19.257	2.3147	1	35418	+		35048	21012	20554	20555	42539	42539					0.014248906552097651
QAVPTLLQAF	10	Unmodified	_QAVPTLLQAF_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;ENST00000469614.1_1_7:4828357-4829561:+|nuORF;ENST00000477454.1_1_7:4827252-4828627:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.29833984375	2	544.310949	1086.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.831	1	43.831	43.331	44.331	0								0	0	0	0.35611	1	9662	9662		12.241	0	1				35049	8553	20555	20556	42540	42540					0.06750602511442594
QAVVHSEV	8	Unmodified	_QAVVHSEV_					0	0	0		ENST00000495864.5_1_3:45877080-45883504:-|nuORF;ENST00000480156.5_1_3:45874526-45883504:-|nuORF;ENST00000469874.5_1_3:45867808-45883491:-|nuORF;nc|ENSG00000163818|Q9NQ48-3|LZTFL1;nc|ENSG00000163818|Q9NQ48-2|LZTFL1;ENSG00000163818|ENST00000296135|LZTFL1	ENST00000495864.5_1_3:45877080-45883504:-|nuORF	ENST00000495864.5_1_3:45877080-45883504:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.77978515625	2	434.729792	867.445031	0.020436	8.8843E-06	0.12462	5.4178E-05	0.14506	6.3062E-05	434.7294688099533	30.042	0.39237	30.042	29.833	30.225	0					21	13	2	0	0	0	0.34367	1	5470	5470		1.8442	0	1	78974			35050	5739	20556	20557	42541	42541					0.006006388292917109
QAVVHSEV	8	Unmodified	_QAVVHSEV_					0	0	0		ENST00000495864.5_1_3:45877080-45883504:-|nuORF;ENST00000480156.5_1_3:45874526-45883504:-|nuORF;ENST00000469874.5_1_3:45867808-45883491:-|nuORF;nc|ENSG00000163818|Q9NQ48-3|LZTFL1;nc|ENSG00000163818|Q9NQ48-2|LZTFL1;ENSG00000163818|ENST00000296135|LZTFL1	ENST00000495864.5_1_3:45877080-45883504:-|nuORF	ENST00000495864.5_1_3:45877080-45883504:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	434.729792	867.445031	-0.35551	-0.00015455	0.97555	0.0004241	0.62004	0.00026955	434.7297790698839	29.959	0.38245	29.972	29.824	30.207	0.013475	-0.034647	0.00034893	NaN	1.8442	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70483			35051	5739	20556	20557							0.006006388292917109
QCAGLELVTW	10	Carbamidomethyl (C)	_QC(Carbamidomethyl (C))AGLELVTW_	QC(1)AGLELVTW		QC(42)AGLELVTW		0	1	0			REV__ENST00000369774.8_3_10:105360094-105360547:-|nuORF	REV__ENST00000369774.8_3_10:105360094-105360547:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.80810546875	2	588.789524	1175.56449	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.649	1	37.746	37.246	38.246	0.097527								0	0	0	0.18461	1	7766	7766		41.84	14.956	1		+		35052	20361	20557	20558	42542	42542	31				-0.016265356083295046
QCIMKRLSNQD	11	Unmodified	_QCIMKRLSNQD_					0	0	0			REV__nc|ENSG00000187627|P0DJD0|RGPD1	REV__nc|ENSG00000187627|P0DJD0|RGPD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.63580322265625	3	445.88844	1334.64349	0.23811	0.00010617	-0.038032	-1.6958E-05	0.20008	8.9212E-05	445.88896580073674	33.368	0.38968	33.368	33.174	33.564	0					21	13	2	0	0	0	0.33296	1	6480	6480		1.2148	0	1	156630	+		35053	18371	20558	20559	42543	42543					-0.01044631645663685
QCKEHLFQ	8	Unmodified	_QCKEHLFQ_					0	0	0			REV__ENSG00000215910|ENST00000688073|C1orf167	REV__ENSG00000215910|ENST00000688073|C1orf167	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.766845703125	2	516.750201	1031.48585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.171	1	38.171	37.671	38.671	0								0	0	0	0.33981	1	7933	7933		19.257	1.122	1		+		35054	19082	20559	20560	42544	42544					-0.02863343122749029
QCLQLLRNEK	10	Unmodified	_QCLQLLRNEK_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1	REV__ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.58209228515625	3	415.564173	1243.67069	0.27377	0.00011377	-0.10062	-4.1816E-05	0.17314	7.1953E-05	415.5639422700239	23.715	0.57446	23.676	23.364	23.939	-0.038927					27	19	2	0	0	0	0.31358	1	3457	3457		12.175	5.9404	1	116870	+		35055	16610	20560	20561	42545	42545					0.0586021995700321
QCLQLLRNEK	10	Unmodified	_QCLQLLRNEK_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1	REV__ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	415.564173	1243.67069	0.15216	6.3231E-05	-0.3288	-0.00013664	-0.17665	-7.3408E-05	415.5640600470637	23.655	0.61977	23.582	23.285	23.905	-0.072559	-0.046987	-5.7718E-05	NaN	12.175	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106530	+		35056	16610	20560	20561							0.0586021995700321
QCNRHKPWR	9	Unmodified	_QCNRHKPWR_					0	0	0		nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;nc|ENSG00000164418|Q13002-7|GRIK2;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-3|GRIK2;nc|ENSG00000164418|Q13002-6|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.810546875	2	612.81199	1223.60943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.081	1	19.081	18.581	19.581	0								0	0	0	0.2672	1	2126	2126		0.52476	0	1				35057	5843	20561	20562	42546	42546					0.006567527682136642
QCPQENCKRI	10	Unmodified	_QCPQENCKRI_					0	0	0			REV__nc|ENSG00000145808|Q8TE59|ADAMTS19	REV__nc|ENSG00000145808|Q8TE59|ADAMTS19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.55340576171875	3	406.862113	1217.56451	-0.24214	-9.8519E-05	-4.1183	-0.0016756	-4.3604	-0.0017741	406.86027916744024	31.169	0.13959	31.169	31.118	31.258	0					6	4	2	0	0	0	0.31889	1	5810	5810		1.5923	0	1	17618	+		35058	16309	20562	20563	42547	42547					-0.03556858879983338
QCRRLVTL	8	Unmodified	_QCRRLVTL_					0	0	0			REV__nc|ENSG00000079102|Q06455-3|RUNX1T1	REV__nc|ENSG00000079102|Q06455-3|RUNX1T1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7889404296875	2	494.789661	987.564769	0.4838	0.00023938	-1.4594	-0.00072212	-0.97565	-0.00048274	494.78890103091874	82.198	0.7393	82.198	81.968	82.708	0					52	26	3	0	0	0	0.28088	1	21457	21457		39.957	5.8549	1	364960	+		35059	13864	20563	20564	42548	42548					0.07048928902213447
QCRRLVTL	8	Unmodified	_QCRRLVTL_					0	0	0			REV__nc|ENSG00000079102|Q06455-3|RUNX1T1	REV__nc|ENSG00000079102|Q06455-3|RUNX1T1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2790222167969	2	494.789661	987.564769	0.3298	0.00016318	-1.043	-0.00051607	-0.7132	-0.00035289	494.78909719129814	82.122	0.71608	82.191	81.931	82.647	0.068993					61	29	3	0	0	0	0.34167	1	21360	21360		11.64	2.2929	1	452370	+		35060	13864	20563	20564	42549	42549					0.07048928902213447
QCSQKKAQK	9	Unmodified	_QCSQKKAQK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7824096679688	2	524.782033	1047.54951	0.76347	0.00040065	0.12025	6.3104E-05	0.88371	0.00046376	524.7820461878877	20.792	0.62543	20.682	20.466	21.091	-0.11003					47	21	3	0	0	0	0.34809	1	2687	2687		1.6526	0	1	160550			35061	5647	20564	20565	42550	42550					0.02764017314348166
QCTPRVGGLP	10	Unmodified	_QCTPRVGGLP_					0	0	0		nc|ENSG00000141524|Q7Z403-4|TMC6;nc|ENSG00000141524|Q7Z403-2|TMC6;ENST00000588087.5_1_17:76116732-76122925:-|nuORF;ENSG00000141524|ENST00000590602|TMC6	nc|ENSG00000141524|Q7Z403-4|TMC6	nc|ENSG00000141524|Q7Z403-4|TMC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.8131713867188	2	514.271301	1026.52805	0.41571	0.00021379	0.58183	0.00029922	0.99754	0.00051301	514.7732653936616	50.206	0.4278	50.206	49.953	50.381	0					19	15	2	0	0	0	0.31143	1	11560	11560		17.113	4.5813	1	308640			35062	4389	20565	20566	42551	42551					0.01584632285630505
QCYSCPVSL	9	Carbamidomethyl (C)	_QCYSC(Carbamidomethyl (C))PVSL_	QC(0.198)YSC(0.802)PVSL		QC(-6.1)YSC(6.1)PVSL		0	1	0			REV__ENST00000593532.5_1_19:50832950-50855804:+|nuORF	REV__ENST00000593532.5_1_19:50832950-50855804:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7279663085938	2	528.728077	1055.4416	0.59241	0.00031322	-0.60135	-0.00031795	-0.0089424	-4.7281E-06	528.7277802064241	53.051	1.1707	53.051	52.743	53.914	0					91	43	3	0	0	0	0.057976	1	12476	12476		49.933	6.0747	2	2194800	+		35063	22583	20566	20567	42552	42552	36				-0.0839011533125813
QCYSCPVSL	9	Carbamidomethyl (C)	_QCYSC(Carbamidomethyl (C))PVSL_	QC(0.198)YSC(0.802)PVSL		QC(-6.1)YSC(6.1)PVSL		0	1	0			REV__ENST00000593532.5_1_19:50832950-50855804:+|nuORF	REV__ENST00000593532.5_1_19:50832950-50855804:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7279052734375	2	528.728077	1055.4416	0.6825	0.00036085	-0.57708	-0.00030512	0.10542	5.5736E-05	528.7277608087772	53.04	0.81293	53.097	52.772	53.585	0.056255					68	29	3	0	0	0	0.057976	1	12464	12464		49.933	6.0747	2	2401500	+		35064	22583	20566	20567	42553	42553	36				-0.0839011533125813
QDCLWMPK	8	Unmodified	_QDCLWMPK_					0	0	0		ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2789001464844	2	510.735706	1019.45686	0.19479	9.9485E-05	-0.8737	-0.00044623	-0.67891	-0.00034674	510.7353363925628	19.604	0.74746	19.604	19.325	20.073	0					38	26	2	0	0	0	0.34353	1	2281	2281		4.756	0	1	45674			35065	8183	20567	20568	42554	42554					-0.052092037433908445
QDDKDNSNAF	10	Unmodified	_QDDKDNSNAF_					0	0	0			REV__ENST00000423502.1_1_13:24902623-24902962:+|nuORF	REV__ENST00000423502.1_1_13:24902623-24902962:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7479248046875	2	577.241449	1152.46835	0.24312	0.00014034	-1.8331	-0.0010581	-1.59	-0.00091779	577.24013737533	67.587	0.74911	67.587	67.193	67.942	0					87	25	6	0	0	0	0.38773	1	16906	16906		5.7319	0.43497	1	1480400	+		35066	16642	20568	20569	42555	42555					-0.10179011914715375
QDDLKQRHRRP	11	Unmodified	_QDDLKQRHRRP_					0	0	0			REV__nc|ENSG00000159216|Q01196-7|RUNX1	REV__nc|ENSG00000159216|Q01196-7|RUNX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7593688964844	3	483.599157	1447.77564	-0.11919	-5.7641E-05	0.044054	2.1305E-05	-0.075138	-3.6337E-05	483.59923147766034	13.252	0.44596	13.185	13.022	13.468	-0.067496					35	15	4	0	0	0	0.33347	1	425	425		0.45452	0	1	83799	+		35067	16843	20569	20570	42556	42556					0.0696647747777206
QDDSCCDCK	9	Unmodified	_QDDSCCDCK_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-13|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-13|PDE4DIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.2643127441406	2	508.659535	1015.30452	0.27397	0.00013936	0.7852	0.0003994	1.0592	0.00053876	508.6597894696793	21.591	0.58976	21.541	21.265	21.855	-0.049377					26	20	2	0	0	0	0.26145	1	2946	2946		2.0598	0.73022	1	96182	+		35068	23108	20570	20571	42557	42557					-0.20252392273130226
QDERERLF	8	Unmodified	_QDERERLF_					0	0	0			REV__ENSG00000146904|ENST00000275815|EPHA1	REV__ENSG00000146904|ENST00000275815|EPHA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.801025390625	2	546.775262	1091.53597	0.66686	0.00036462	-1.639	-0.00089617	-0.97216	-0.00053155	546.7741710056745	77.241	0.81274	77.241	76.983	77.796	0					65	29	3	0	0	0	0.31934	1	20005	20005		24.674	0	1	567910	+		35069	16362	20571	20572	42558	42558					-0.00613517193255575
QDFNLKKA	8	Unmodified	_QDFNLKKA_					0	0	0			REV__nc|ENSG00000258315|Q8IXM2-2|BAP18	REV__nc|ENSG00000258315|Q8IXM2-2|BAP18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.2663269042969	2	482.266542	962.51853	0.052342	2.5243E-05	-0.064866	-3.1283E-05	-0.012525	-6.0403E-06	482.2666807336172	18.364	0.82653	18.246	17.957	18.784	-0.11739					40	28	2	0	0	0	0.45942	1	2025	2025		2.5775	0	1	49920	+		35070	19266	20572	20573	42559	42559					0.03577187271741877
QDGQGVPL	8	Unmodified	_QDGQGVPL_					0	0	0		ENST00000557951.1_1_15:73996325-74000993:+|nuORF;nc|ENSG00000103855|Q5ZPR3-2|CD276;nc|ENSG00000103855|Q5ZPR3-3|CD276;nc|ENSG00000103855|Q5ZPR3-4|CD276;ENSG00000103855|ENST00000318443|CD276	ENST00000557951.1_1_15:73996325-74000993:+|nuORF	ENST00000557951.1_1_15:73996325-74000993:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.56915283203125	2	407.208692	812.402832	-0.23502	-9.5704E-05	0.6196	0.00025231	0.38458	0.0001566	407.2088539437209	15.596	0.52234	15.486	15.23	15.753	-0.10981					28	17	2	0	0	0	0.34247	1	1085	1085		8.5933	0	1	41631			35071	1854	20573	20574	42560	42560					-0.01087336579098519
QDKTLTAEH	9	Unmodified	_QDKTLTAEH_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3084106445312	2	521.76182	1041.50909	0.41458	0.00021631	-1.1596	-0.00060505	-0.74505	-0.00038874	521.761255161725	24.942	0.38547	24.942	24.706	25.091	0					20	13	2	0	0	0	0.23784	1	3854	3854		19.257	3.4098	1	86467			35072	8632	20574	20575	42561	42561					-0.010006258044313654
QDKTLTAEH	9	Unmodified	_QDKTLTAEH_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.308349609375	2	521.76182	1041.50909	0.25544	0.00013328	-1.9934	-0.0010401	-1.738	-0.0009068	521.7614126781053	25.027	0.32421	24.971	24.809	25.134	-0.055931					18	11	2	0	0	0	0.23784	1	3888	3888		19.257	4.4187	1	71792			35073	8632	20574	20575	42562	42562					-0.010006258044313654
QDKTLTAEH	9	Unmodified	_QDKTLTAEH_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3082885742188	2	521.76182	1041.50909	0.035778	1.8668E-05	-0.39565	-0.00020644	-0.35988	-0.00018777	521.7619851349613	24.919	0.44353	24.888	24.765	25.209	-0.031408					19	14	2	0	0	0	0.21389	1	3875	3875		25.399	7.2643	1	87552			35074	8632	20574	20575	42563	42563					-0.010006258044313654
QDLFSRAQ	8	Unmodified	_QDLFSRAQ_					0	0	0			REV__PDE6B|p.E631Pfs*50|1|0.1|ENSG00000133256|chr4:663156-663169|TGGAGTTTGGGAAG/-|frameshift_variant	REV__PDE6B|p.E631Pfs*50|1|0.1|ENSG00000133256|chr4:663156-663169|TGGAGTTTGGGAAG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.2663269042969	2	482.745973	963.477394	0.053583	2.5867E-05	1.6934	0.00081748	1.747	0.00084334	482.7466218848725	18.69	0.29411	18.573	18.44	18.734	-0.11739					20	9	3	0	0	0	0.34367	1	2025	2025		4.3292	0.38484	1	24926	+		35075	15615	20575	20576	42564	42564					-0.005805737677178513
QDLHATNQAP	10	Unmodified	_QDLHATNQAP_					0	0	0			REV__PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	REV__PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7874755859375	2	547.764894	1093.51524	0.51678	0.00028307	-3.3102	-0.0018132	-2.7934	-0.0015301	547.7612648813904	72.483	0.61832	72.483	72.132	72.75	0					61	22	4	0	0	0	0.22295	1	18523	18523		29.841	0.759	1	182950	+		35076	13751	20576	20577	42565	42565					-0.02778107572908084
QDLHATNQAP	10	Unmodified	_QDLHATNQAP_					0	0	0			REV__PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	REV__PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	547.764894	1093.51524	0.68759	0.00037664	-3.8117	-0.0020879	-3.1242	-0.0017113	547.7612181277952	72.394	0.7328	72.45	72.084	72.816	0.056572	-0.020353	0.00027318	NaN	29.841	64	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214500	+		35077	13751	20576	20577							-0.02778107572908084
QDLHATNQAP	10	Unmodified	_QDLHATNQAP_					0	0	0			REV__PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	REV__PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	547.764894	1093.51524	0.62305	0.00034129	-5.0093	-0.0027439	-4.3862	-0.0024026	548.2617692158301	72.508	0.59686	72.479	72.141	72.738	-0.029297	0.0080147	-0.0010387	NaN	29.841	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248140	+		35078	13751	20576	20577							-0.02778107572908084
QDLPRKRYQVR	11	Unmodified	_QDLPRKRYQVR_					0	0	0		ENST00000521675.1_1_5:179268839-179271187:-|nuORF	ENST00000521675.1_1_5:179268839-179271187:-|nuORF	ENST00000521675.1_1_5:179268839-179271187:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2603759765625	3	486.947786	1457.82153	0.30559	0.00014881	-1.8483	-0.00090003	-1.5427	-0.00075122	486.94722962186444	29.585	0.38507	29.597	29.389	29.774	0.012266					22	12	2	0	0	0	0.33296	1	5271	5271		1.2148	0	1	163250			35079	11492	20577	20578	42566	42566					0.11093122660008703
QDLTGRNIS	9	Unmodified	_QDLTGRNIS_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2477111816406	2	502.261988	1002.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.078	1	26.078	25.578	26.578	0								0	0	0	0.16757	1	4244	4244		30.637	6.616	1				35080	5917	20578	20579	42567	42567					0.008267939154393389
QDLTIPPKPM	10	Unmodified	_QDLTIPPKPM_					0	0	0			REV__ENSG00000112367|ENST00000230124|FIG4	REV__ENSG00000112367|ENST00000230124|FIG4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.3101806640625	2	570.310092	1138.60563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.736	1	12.669	12.169	13.169	-0.067496								0	0	0	0.38126	1	215	215		1.6526	0.17072	1		+		35081	14774	20579	20580	42568	42568					0.04187225431155639
QDMQRVLIDI	10	Unmodified	_QDMQRVLIDI_					0	0	0		ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3	ENSG00000013375|ENST00000513973|PGM3	ENSG00000013375|ENST00000513973|PGM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2467041015625	3	410.888546	1229.64381	0.0023337	9.589E-07	-0.41683	-0.00017127	-0.4145	-0.00017031	410.8883142853452	25.063	0.37672	25.007	24.809	25.186	-0.055931					18	13	2	0	0	0	0.32068	1	3894	3894		3.5871	0	1	44314			35082	463	20580	20581	42569	42569					0.03817111345847479
QDNKTALYW	9	Unmodified	_QDNKTALYW_					0	0	0		nc|ENSG00000134313|Q9ULH0-3|KIDINS220;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	nc|ENSG00000134313|Q9ULH0-3|KIDINS220	nc|ENSG00000134313|Q9ULH0-3|KIDINS220	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.303955078125	2	569.780013	1137.54547	0.13905	7.9229E-05	0.35353	0.00020144	0.49259	0.00028067	569.7802094740174	19.723	0.44045	19.723	19.493	19.933	0					23	15	2	0	0	0	0.26117	1	2383	2383		2.3027	0.4585	1	26400			35083	3772	20581	20582	42570	42570					-0.017797489077111095
QDPFYFLF	8	Unmodified	_QDPFYFLF_					0	0	0		Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|166|2|anti-sense	Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|166|2|anti-sense	Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|166|2|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7582397460938	2	538.758018	1075.50148	0.65768	0.00035433	-0.18057	-9.7286E-05	0.47711	0.00025705	538.7577800180204	92.929	0.59464	92.93	92.696	93.291	0.00046539					124	55	3	0	0	0	0.42077	1	24704	24704		15.847	4.2069	1	294400			35084	12377	20582	20583	42571	42571					-0.03324733334056873
QDPLCQRL	8	Unmodified	_QDPLCQRL_					0	0	0			REV__ENSG00000144580|ENST00000273064|CNOT9	REV__ENSG00000144580|ENST00000273064|CNOT9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.8080139160156	2	486.750201	971.48585	0.15301	7.4477E-05	0.73262	0.0003566	0.88563	0.00043108	486.75041630214764	22.319	0.66695	22.319	21.896	22.563	0					39	23	2	0	0	0	0.34167	1	3094	3094		11.64	0.14559	1	59717	+		35085	16244	20583	20584	42572	42572					-0.001033431227483561
QDQFDSFLK	9	Unmodified	_QDQFDSFLK_					0	0	0		ENST00000471105.5_1_1:201965436-201974841:+|nuORF;RNPEP|p.Y459Sfs*25|1|0.22|ENSG00000176393|chr1:202001717-202001717|A/-|frameshift_variant;ENSG00000176393|ENST00000295640|RNPEP	ENST00000471105.5_1_1:201965436-201974841:+|nuORF	ENST00000471105.5_1_1:201965436-201974841:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.2723999023438	2	564.272021	1126.52949	0.40695	0.00022963	-0.019695	-1.1114E-05	0.38725	0.00021852	564.2716892178952	57.127	0.52674	57.127	56.908	57.435	0					45	19	3	0	0	0	0.13296	1	13785	13785		33.445	9.6551	1	604710			35086	6925	20584	20585	42573	42573					-0.028714551446228143
QDQFDSFLK	9	Unmodified	_QDQFDSFLK_					0	0	0		ENST00000471105.5_1_1:201965436-201974841:+|nuORF;RNPEP|p.Y459Sfs*25|1|0.22|ENSG00000176393|chr1:202001717-202001717|A/-|frameshift_variant;ENSG00000176393|ENST00000295640|RNPEP	ENST00000471105.5_1_1:201965436-201974841:+|nuORF	ENST00000471105.5_1_1:201965436-201974841:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.272021	1126.52949	0.38221	0.00021567	0.46167	0.00026051	0.84388	0.00047618	564.2718163788891	56.976	0.53354	57.055	56.802	57.336	0.078674	-0.09929	0.00048109	NaN	33.445	46	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	632420			35087	6925	20584	20585							-0.028714551446228143
QDQFDSFLK	9	Unmodified	_QDQFDSFLK_					0	0	0		ENST00000471105.5_1_1:201965436-201974841:+|nuORF;RNPEP|p.Y459Sfs*25|1|0.22|ENSG00000176393|chr1:202001717-202001717|A/-|frameshift_variant;ENSG00000176393|ENST00000295640|RNPEP	ENST00000471105.5_1_1:201965436-201974841:+|nuORF	ENST00000471105.5_1_1:201965436-201974841:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	564.272021	1126.52949	0.12356	6.9721E-05	-0.39395	-0.0002223	-0.27039	-0.00015258	564.2715816523055	57.297	0.54105	57.28	57.065	57.606	-0.0172	0.12599	-0.00048451	NaN	33.445	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478080			35088	6925	20584	20585							-0.028714551446228143
QDRRRQQLSL	10	Unmodified	_QDRRRQQLSL_					0	0	0		ENST00000567540.1_1_2:10180184-10180304:-|nuORF	ENST00000567540.1_1_2:10180184-10180304:-|nuORF	ENST00000567540.1_1_2:10180184-10180304:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.91265869140625	3	433.912853	1298.71673	-0.37243	-0.0001616	-0.33723	-0.00014633	-0.70966	-0.00030793	433.9127188769773	15.085	0.69714	15.021	14.79	15.487	-0.064414					59	23	3	0	0	0	0.3183	1	917	917		8.4443	0	1	378710			35089	11995	20585	20586	42574	42574					0.07932001183485227
QDSPLPKKA	9	Unmodified	_QDSPLPKKA_					0	0	0		ENSG00000124659|ENST00000372876|TBCC	ENSG00000124659|ENST00000372876|TBCC	ENSG00000124659|ENST00000372876|TBCC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.26727294921875	2	492.279649	982.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.034	1	21.934	21.434	22.434	-0.10034								0	0	0	0.22377	1	3025	3025		14.838	6.9281	1				35090	3173	20586	20587	42575	42575					0.052774564432297666
QDVFEDERKV	10	Unmodified	_QDVFEDERKV_					0	0	0		ENSG00000136449|ENST00000323776|MYCBPAP;nc|ENSG00000136449|Q8TBZ2|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.811279296875	2	632.812042	1263.60953	0.0019798	1.2529E-06	-0.763	-0.00048283	-0.76102	-0.00048158	632.8115201026034	12.932	0.30345	12.932	12.815	13.118	0					23	10	3	0	0	0	0.41469	1	284	284		0	0	1	64199			35091	3975	20587	20588	42576	42576					-0.011730135414381948
QDVFEDERKV	10	Unmodified	_QDVFEDERKV_					0	0	0		ENSG00000136449|ENST00000323776|MYCBPAP;nc|ENSG00000136449|Q8TBZ2|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	632.812042	1263.60953	0.0019798	1.2529E-06	-0.763	-0.00048283	-0.76102	-0.00048158	632.8115201026034	12.932	0.30345	12.932	12.815	13.118	0	0.0029362	0.00010111	NaN	0	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64199			35092	3975	20587	20588							-0.011730135414381948
QDVFEDERKV	10	Unmodified	_QDVFEDERKV_					0	0	0		ENSG00000136449|ENST00000323776|MYCBPAP;nc|ENSG00000136449|Q8TBZ2|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	632.812042	1263.60953	0.030154	1.9082E-05	-1.0539	-0.00066694	-1.0238	-0.00064786	632.8115300779197	13.029	0.37501	12.93	12.814	13.189	-0.099291	0.00054587	-0.00026711	NaN	0	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48793			35093	3975	20587	20588							-0.011730135414381948
QDVFEDERKV	10	Unmodified	_QDVFEDERKV_					0	0	0		ENSG00000136449|ENST00000323776|MYCBPAP;nc|ENSG00000136449|Q8TBZ2|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	ENSG00000136449|ENST00000323776|MYCBPAP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	632.812042	1263.60953	0.030226	1.9127E-05	-0.66058	-0.00041802	-0.63035	-0.00039889	632.8118095604349	12.993	0.31076	12.926	12.791	13.102	-0.067496	-0.003482	0.00023073	NaN	0	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49346			35094	3975	20587	20588							-0.011730135414381948
QDVNPLKLG	9	Unmodified	_QDVNPLKLG_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2637023925781	2	492.279649	982.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.684	1	58.776	58.276	59.276	0.091301								0	0	0	0.20639	1	14239	14239		20.454	5.8719	1				35095	917	20588	20589	42577	42577					0.052774564432297666
QDVTGCQFHPN	11	Unmodified	_QDVTGCQFHPN_					0	0	0			REV__ENSG00000112902|ENST00000382496|SEMA5A	REV__ENSG00000112902|ENST00000382496|SEMA5A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8073120117188	2	623.269487	1244.52442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.468	1	93.468	92.968	93.968	-0.00051117								0	0	0	0.37501	1	24891	24891		2.7352	1.0826	1		+		35096	14792	20589	20590	42578	42578					-0.08806082278874783
QDVVASLEH	9	Unmodified	_QDVVASLEH_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.78125	2	499.251089	996.487624	0.26652	0.00013306	0.67299	0.00033599	0.93951	0.00046905	499.2516822290649	26.523	0.32192	26.523	26.379	26.701	0					16	10	2	0	0	0	0.24311	1	4350	4350		16.942	0	1	82215			35097	3087	20590	20591	42579	42579					-0.010760108331396623
QDYEGRYCIF	10	Unmodified	_QDYEGRYCIF_					0	0	0		ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.2801513671875	3	431.857134	1292.54957	0.11083	4.7862E-05	2.0306	0.00087693	2.1414	0.00092479	431.8578117517249	49.967	0.48312	49.988	49.719	50.202	0.020691					36	17	3	0	0	0	0.31994	1	11471	11471		3.0723	0	1	334300			35098	6514	20591	20592	42580	42580					-0.08500027476316063
QDYLLVPAPP	10	Unmodified	_QDYLLVPAPP_					0	0	0			REV__ENSG00000130829|ENST00000342782|DUSP9	REV__ENSG00000130829|ENST00000342782|DUSP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7843017578125	2	556.802957	1111.59136	0.20279	0.00011291	-0.6294	-0.00035045	-0.42662	-0.00023754	556.8022241822699	49.659	0.58428	49.68	49.429	50.014	0.020691					57	21	4	0	0	0	0.35231	1	11544	11544		12.241	0.74595	1	1434500	+		35099	15486	20592	20593	42581	42581					0.040028962745282115
QEARESTL	8	Unmodified	_QEARESTL_					0	0	0			REV__nc|ENSG00000136250|P28039-2|AOAH	REV__nc|ENSG00000136250|P28039-2|AOAH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.57373046875	2	467.235439	932.456324	0.1864	8.7092E-05	-0.35489	-0.00016582	-0.16849	-7.8727E-05	467.23520492243546	19.485	0.53388	19.43	19.144	19.678	-0.055693					25	18	2	0	0	0	0.34247	1	2252	2252		8.5933	0.68312	1	50185	+		35100	15800	20593	20594	42582	42582					-0.012605838672243408
QEASELGFLY	10	Unmodified	_QEASELGFLY_					0	0	0			REV__ENST00000465814.5_1_11:72407932-72423670:-|nuORF	REV__ENST00000465814.5_1_11:72407932-72423670:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3209228515625	2	578.779679	1155.5448	0.43916	0.00025418	-4.0625	-0.0023513	-3.6233	-0.0020971	579.278543057469	82.97	0.18206	82.95	82.896	83.078	-0.020584					11	6	2	0	0	0	0.31629	1	21687	21687		10.074	0.6908	1	61570	+		35101	18455	20594	20595	42583	42583					-0.026745883473950016
QEATSSMSLM	10	Unmodified	_QEATSSMSLM_					0	0	0		ENSG00000166130|ENST00000299157|IKBIP	ENSG00000166130|ENST00000299157|IKBIP	ENSG00000166130|ENST00000299157|IKBIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.7691650390625	2	542.736099	1083.45765	1.1131	0.00060414	-0.36764	-0.00019953	0.7455	0.00040461	542.7358841038393	56.117	0.29749	56.098	55.942	56.239	-0.019081					15	10	2	0	0	0	0.31401	1	13407	13407		14.405	3.5815	1	219400			35102	6030	20595	20596	42584	42584					-0.08074453885001276
QEDAEEYLGF	10	Unmodified	_QEDAEEYLGF_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.2739868164062	2	600.756401	1199.49825	0.6453	0.00038767	-1.1165	-0.00067073	-0.47117	-0.00028306	600.7560053795901	74.797	0.52621	74.765	74.557	75.084	-0.031487					35	18	2	0	0	0	0.30958	1	19223	19223		19.257	2.1441	1	501860			35103	1815	20596	20597	42585	42585					-0.09352072969386427
QEDVVFPIL	9	Unmodified	_QEDVVFPIL_					0	0	0			REV__nc|ENSG00000129646|Q9H0J4-2|QRICH2	REV__nc|ENSG00000129646|Q9H0J4-2|QRICH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3115844726562	2	530.289682	1058.56481	0.48763	0.00025858	-2.5556	-0.0013552	-2.068	-0.0010966	530.2887150330962	20.07	0.34018	19.954	19.786	20.126	-0.11592					16	11	2	0	0	0	0.25622	1	2470	2470		7.2892	0	1	41063	+		35104	15423	20597	20598	42586	42586					0.037872073831977104
QEEERIRER	9	Unmodified	_QEEERIRER_					0	0	0		nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2;ENSG00000174450|ENST00000567107|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5196228027344	3	415.54958	1243.62691	0.26886	0.00011173	-2.2971	-0.00095454	-2.0282	-0.00084282	415.54856279582975	29.263	0.97896	29.275	28.706	29.685	0.012266					63	33	2	0	0	0	0.25605	1	5149	5149		5.7834	0.38072	1	268990			35105	6795	20598	20599	42587	42587					0.014843267842252317
QEELIEWIK	9	Unmodified	_QEELIEWIK_					0	0	0		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.33544921875	2	594.318971	1186.62339	0.37594	0.00022343	0.32529	0.00019332	0.70122	0.00041675	594.3192245031769	24.135	0.65951	24.096	23.848	24.507	-0.038927					55	22	3	0	0	0	0.31763	1	3763	3763		6.2058	0.47393	1	127960			35106	6756	20599	20600	42588	42588					0.03754263957648618
QEFFAAMF	8	Unmodified	_QEFFAAMF_					0	0	0		ENSG00000158077|ENST00000299481|NLRP14	ENSG00000158077|ENST00000299481|NLRP14	ENSG00000158077|ENST00000299481|NLRP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.772216796875	2	495.723121	989.431689	0.055905	2.7713E-05	-0.39739	-0.000197	-0.34149	-0.00016928	495.7230072907762	39.327	0.73041	39.327	39.073	39.803	0					42	26	2	0	0	0	0.31934	1	8233	8233		18.135	0	1	340690			35107	5337	20600	20601	42589	42589					-0.06344935274307772
QEFGLARFK	9	Unmodified	_QEFGLARFK_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.301025390625	2	548.300916	1094.58728	0.69674	0.00038202	-0.68231	-0.00037411	0.014426	7.9099E-06	548.3002761277261	45.716	0.47544	45.781	45.595	46.07	0.065048					28	16	2	0	0	0	2.942E-07	1	10233	10233		168.66	107.3	1	635990			35108	6338	20601	20602	42590	42590					0.04376851571464613
QEFGLARFK	9	Unmodified	_QEFGLARFK_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	548.300916	1094.58728	0.58272	0.00031951	-0.4216	-0.00023116	0.16113	8.8346E-05	548.3005552471341	46.008	0.44602	46.008	45.776	46.222	0	0.1577	6.0266E-05	NaN	168.66	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	597630			35109	6338	20601	20602							0.04376851571464613
QEFGLARFK	9	Unmodified	_QEFGLARFK_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.300916	1094.58728	0.49079	0.0002691	-0.34634	-0.0001899	0.14445	7.92E-05	548.3003917605762	45.702	0.53839	45.762	45.505	46.043	0.059834	-0.088681	0.00014279	NaN	168.66	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	674480			35110	6338	20601	20602							0.04376851571464613
QEFLKLLMER	10	Unmodified	_QEFLKLLMER_					0	0	0		ENST00000482385.5_1_1:161132454-161133955:+|nuORF;ENST00000487163.5_1_1:161131815-161133927:+|nuORF;nc|ENSG00000143258|Q9UK80-2|USP21;nc|ENSG00000143258|Q9UK80-3|USP21;ENSG00000143258|ENST00000368002|USP21	ENST00000482385.5_1_1:161132454-161133955:+|nuORF	ENST00000482385.5_1_1:161132454-161133955:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.5821228027344	3	436.244441	1305.71149	-0.19939	-8.6984E-05	1.4383	0.00062745	1.2389	0.00054046	436.2448667060378	28.796	1.0245	28.797	28.322	29.346	0.00046921					49	36	2	0	0	0	0.32095	1	4930	4930		3.0723	0.22898	1	551270			35111	4496	20602	20603	42591	42591					0.07086561276628345
QEFRKKRRL	9	Unmodified	_QEFRKKRRL_					0	0	0			REV__chr14:24211581-24211680|273|60.75|0.0|22.53|-|0|None,CHMP4A|1	REV__chr14:24211581-24211680|273|60.75|0.0|22.53|-|0|None,CHMP4A|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.57586669921875	3	420.926434	1259.75747	0.0088086	3.7078E-06	1.1552	0.00048624	1.164	0.00048995	421.2610786983157	38.767	1.0941	38.86	38.266	39.36	0.09267					48	39	2	0	0	0	0.25756	1	8087	8087		7.1017	3.2254	1	165320	+		35112	13181	20603	20604	42592	42592					0.1379838729376388
QEGLLQLEW	9	Unmodified	_QEGLLQLEW_					0	0	0			REV__ENST00000594125.1_1_19:35832003-35832498:+|nuORF	REV__ENST00000594125.1_1_19:35832003-35832498:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.291015625	2	558.290214	1114.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.222	1	95.222	94.722	95.722	0								0	0	0	0.2489	1	25418	25418		6.7232	0	1		+		35113	22585	20604	20605	42593	42593					0.013174217521054743
QEHLYKLGS	9	Unmodified	_QEHLYKLGS_					0	0	0			REV__ENSG00000145632|ENST00000274289|PLK2	REV__ENSG00000145632|ENST00000274289|PLK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.3217163085938	2	537.782556	1073.55056	0.41477	0.00022305	1.4931	0.00080295	1.9078	0.001026	537.785078168671	57.318	0.094311	57.403	57.343	57.437	0.085621					4	2	2	0	0	0	0.2451	1	13817	13817		15.847	0	1	147750	+		35114	16297	20605	20606	42594	42594					0.016725549548937124
QEIRRKREE	9	Unmodified	_QEIRRKREE_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3469848632812	2	622.346917	1242.67928	0.49695	0.00030928	0.38137	0.00023734	0.87832	0.00054662	622.3470765266429	85.83	2.7365	85.83	84.994	87.731	0					216	110	3	0	0	0	0.31417	1	22620	22620		6.7232	0	1	1062300	+		35115	16992	20606	20607	42595	42595					0.06764909917842488
QEIRRKREE	9	Unmodified	_QEIRRKREE_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3472290039062	2	622.346917	1242.67928	0.19645	0.00012226	0.66446	0.00041352	0.86091	0.00053578	622.3471316749807	85.769	2.5488	85.854	85.024	87.573	0.084251					256	102	3	0	0	0	0.31417	1	22622	22622		6.7232	0	1	1032600	+		35116	16992	20606	20607	42596	42596					0.06764909917842488
QEIRRKREE	9	Unmodified	_QEIRRKREE_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3471069335938	2	622.346917	1242.67928	0.37438	0.000233	0.4153	0.00025846	0.78968	0.00049145	622.347035965394	85.773	3.0068	85.764	84.921	87.928	-0.0090103					276	128	4	0	0	0	0.31417	3	22390	22390;22435;22484		6.7232	0	1	1118300	+		35117	16992	20606	20607	42597;42598;42599	42597					0.06764909917842488
QEKEAIERLK	10	Unmodified	_QEKEAIERLK_					0	0	0		nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A;nc|ENSG00000119318|P54727-2|RAD23B;ENSG00000119318|ENST00000358015|RAD23B	nc|ENSG00000179262|P54725-3|RAD23A	nc|ENSG00000179262|P54725-3|RAD23A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.35400390625	2	622.353877	1242.6932	0.1406	8.7503E-05	0.075268	4.6843E-05	0.21587	0.00013435	622.3538522294168	37.202	0.78671	37.29	37.006	37.793	0.08741					74	28	4	0	0	0	0.12096	1	7655	7655		57.249	9.6547	1	1420100			35118	7111	20607	20608	42600	42600					0.08156142626262408
QEKEAIERLK	10	Unmodified	_QEKEAIERLK_					0	0	0		nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A;nc|ENSG00000119318|P54727-2|RAD23B;ENSG00000119318|ENST00000358015|RAD23B	nc|ENSG00000179262|P54725-3|RAD23A	nc|ENSG00000179262|P54725-3|RAD23A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.353759765625	2	622.353877	1242.6932	0.34869	0.00021701	-0.11529	-7.1752E-05	0.2334	0.00014526	622.3537611743566	37.153	0.58798	37.246	37.036	37.624	0.093014					68	21	4	0	0	0	0.12096	2	7603	7603;7660		57.249	5.8339	1	1733700			35119	7111	20607	20608	42601;42602	42601					0.08156142626262408
QEKEREREK	9	Unmodified	_QEKEREREK_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.9115295410156	3	411.217831	1230.63166	-0.77667	-0.00031938	0.93145	0.00038303	0.15478	6.3648E-05	411.2182628630636	34.474	0.62095	34.474	34.104	34.725	0					37	21	2	0	0	0	0.24924	1	6846	6846		14.405	1.5328	1	189280			35120	3547	20608	20609	42603	42603					0.025572109269887733
QEKIGNFK	8	Unmodified	_QEKIGNFK_					0	0	0		nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.2770690917969	2	482.266542	962.51853	0.1541	7.4317E-05	0.33923	0.0001636	0.49333	0.00023792	482.2666895120047	16.825	0.5534	16.825	16.689	17.242	0					28	18	2	0	0	0	0.44734	1	1544	1544		6.7232	6.7232	1	46235			35121	7452	20609	20610	42604	42604					0.03577187271753246
QEKKRRVCK	9	Unmodified	_QEKKRRVCK_					0	0	0			REV__ENSG00000149575|ENST00000278947|SCN2B	REV__ENSG00000149575|ENST00000278947|SCN2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.2948608398438	2	587.845499	1173.67644	0.17164	0.0001009	-3.1426	-0.0018474	-2.971	-0.0017465	588.3447145672808	23.478	0.24504	23.391	23.27	23.515	-0.087608					12	8	2	0	0	0	0.25988	1	3447	3447		3.9444	0.94915	1	31509	+		35122	16477	20610	20611	42605	42605					0.09655363259321348
QEKPLIGLS	9	Unmodified	_QEKPLIGLS_					0	0	0		Harlequin-int_dup238|chr6:111284651-111288187:-|7.344052110360552|0.2813414849289727|4.71|541.0|82|3|sense	Harlequin-int_dup238|chr6:111284651-111288187:-|7.344052110360552|0.2813414849289727|4.71|541.0|82|3|sense	Harlequin-int_dup238|chr6:111284651-111288187:-|7.344052110360552|0.2813414849289727|4.71|541.0|82|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.8074951171875	2	492.78985	983.565146	0.59122	0.00029135	0.032292	1.5913E-05	0.62352	0.00030726	492.78971262662134	64.071	1.4424	64.071	63.364	64.807	0					206	52	5	0	0	0	0.22188	1	16051	16051		20.454	1.1966	1	6496700			35123	12367	20611	20612	42606	42606					0.07270627103048355
QEKTRREPR	9	Unmodified	_QEKTRREPR_					0	0	0			REV__ENSG00000166261|ENST00000530393|ZNF202	REV__ENSG00000166261|ENST00000530393|ZNF202	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3338012695312	2	600.33381	1198.65307	0.74068	0.00044466	0.79698	0.00047845	1.5377	0.00092311	600.3341984924119	84.025	1.2388	84.025	82.925	84.163	0					90	48	3	0	0	0	0.33018	1	21911	21911		4.3292	0.73274	1	1154300	+		35124	17304	20612	20613	42607	42607					0.061686407463639625
QEKVFIEF	8	Unmodified	_QEKVFIEF_					0	0	0			REV__nc|ENSG00000058262|P61619-3|SEC61A1	REV__nc|ENSG00000058262|P61619-3|SEC61A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2752685546875	2	520.276575	1038.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.581	1	97.574	97.074	98.074	-0.0068283								0	0	0	0.35663	1	26128	26128		11.64	3.7301	1		+		35125	13606	20613	20614	42608	42608					0.020869382117098212
QELATRVLCS	10	Unmodified	_QELATRVLCS_					0	0	0			REV__nc|ENSG00000196208|Q4ZG55-4|GREB1	REV__nc|ENSG00000196208|Q4ZG55-4|GREB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7876586914062	2	560.294973	1118.57539	0.15846	8.8785E-05	-0.20187	-0.00011311	-0.043407	-2.4321E-05	560.2955477780397	25.578	0.30114	25.578	25.413	25.714	0					17	9	3	0	0	0	0.32072	1	4046	4046		1.1933	0.59184	1	63233	+		35126	18629	20614	20615	42609	42609					0.02084866765994775
QELGLVRLCV	10	Unmodified	_QELGLVRLCV_					0	0	0			REV__ENST00000557781.5_1_12:57498245-57498961:-|nuORF	REV__ENST00000557781.5_1_12:57498245-57498961:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7977905273438	2	565.323534	1128.63251	0.41791	0.00023625	-0.32177	-0.0001819	0.096142	5.4352E-05	565.3235517975774	66.373	0.41891	66.373	66.211	66.63	0					17	14	2	0	0	0	0.3156	1	16630	16630		10.824	4.1008	1	80545	+		35127	22271	20615	20616	42610	42610					0.07334334042366208
QELIRQHM	8	Unmodified	_QELIRQHM_					0	0	0		nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;AKAP9|p.D1226Efs*39|1|0.05|ENSG00000127914|chr7:92016192-92016193|-/AA|frameshift_variant;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF;AKAP9|p.E1981Vfs*11|1|0.07|ENSG00000127914|chr7:92062450-92062451|-/T|frameshift_variant;AKAP9|p.E1981Dfs*13|1|0.06|ENSG00000127914|chr7:92062451-92062452|-/TACTGTT|frameshift_variant;AKAP9|p.E2362Dfs*11|1|0.24|ENSG00000127914|chr7:92079218-92079218|A/-|frameshift_variant	nc|ENSG00000127914|Q99996-3|AKAP9	nc|ENSG00000127914|Q99996-3|AKAP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3016357421875	2	527.776751	1053.53895	0.33055	0.00017445	1.2768	0.00067387	1.6074	0.00084833	527.7773202452868	22.376	0.80589	22.276	21.943	22.749	-0.10034					67	29	3	0	0	0	0.34131	1	3054	3054		12.532	2.4576	1	214420			35128	3339	20616	20617	42611	42611					0.014320346599106415
QELKDLTAQ	9	Unmodified	_QELKDLTAQ_					0	0	0		CON__Q0VBK2	CON__Q0VBK2	CON__Q0VBK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2730102539062	2	523.279846	1044.54514	0.6265	0.00032783	-0.62087	-0.00032489	0.0056237	2.9427E-06	523.2794742594718	33.58	1.1876	33.58	33.119	34.306	0					123	42	4	0	0	0	0.21303	1	6659	6659		21.747	0	1	3507100		+	35129	224	20617	20618	42612	42612					0.024648313724128457
QELLKEKQQEV	11	Unmodified	_QELLKEKQQEV_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;GOLGB1|p.Q2276Gfs*3|1|0.05|ENSG00000173230|chr3:121692520-121692524|TCTGC/-|frameshift_variant	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.60809326171875	3	457.920791	1370.74054	0.20187	9.2439E-05	2.8194	0.001291	3.0212	0.0013835	457.92201736695165	88.877	0.24155	88.967	88.809	89.05	0.090569					13	9	2	0	0	0	0.33056	1	23513	23513		8.7518	0	1	48886			35130	6706	20618	20619	42613	42613					0.07000377106624
QELQLEHAR	9	Unmodified	_QELQLEHAR_					0	0	0		nc|ENSG00000115840|O75746-2|SLC25A12;ENSG00000115840|ENST00000422440|SLC25A12	nc|ENSG00000115840|O75746-2|SLC25A12	nc|ENSG00000115840|O75746-2|SLC25A12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.5996704101562	2	562.296362	1122.57817	0.11672	6.563E-05	0.69533	0.00039098	0.81205	0.00045661	562.2968466215093	22.762	0.61325	22.717	22.471	23.084	-0.044867					39	21	3	0	0	0	0.25431	1	3264	3264		9.3831	3.6513	1	83993			35131	2682	20619	20620	42614	42614					0.021784582151212817
QEMLAAKRQ	9	Unmodified	_QEMLAAKRQ_					0	0	0		nc|ENSG00000108840|Q9UQL6-2|HDAC5;ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5	nc|ENSG00000108840|Q9UQL6-2|HDAC5	nc|ENSG00000108840|Q9UQL6-2|HDAC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2985229492188	2	537.789858	1073.56516	0.20363	0.00010951	-1.3315	-0.00071608	-1.1279	-0.00060658	537.791559351955	17.746	0.54454	17.628	17.441	17.985	-0.11739					23	18	2	0	0	0	0.24993	1	1709	1709		13.042	1.4022	1	36164			35132	2220	20620	20621	42615	42615					0.03132303831398531
QEMLKLSI	8	Unmodified	_QEMLKLSI_					0	0	0		nc|ENSG00000188869|Q7Z5M5-2|TMC3;ENST00000559982.1_1_15:81630174-81666445:-|nuORF;ENSG00000188869|ENST00000359440|TMC3	nc|ENSG00000188869|Q7Z5M5-2|TMC3	nc|ENSG00000188869|Q7Z5M5-2|TMC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2726745605469	2	481.272978	960.531403	0.1123	5.4045E-05	-0.37562	-0.00018078	-0.26333	-0.00012673	481.2728866812411	24.309	0.42552	24.309	24.029	24.454	0					26	14	2	0	0	0	0.34167	1	3702	3702		11.64	11.64	1	60183			35133	7781	20621	20622	42616	42616					0.04955882339629625
QENPADHDPI	10	Unmodified	_QENPADHDPI_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A;ENST00000491383.5_1_2:86716620-86718467:+|nuORF;ENST00000470160.1_1_2:86716620-86719239:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.82275390625	2	568.25436	1134.49417	0.20676	0.00011749	1.4267	0.00081072	1.6334	0.00092821	568.25548018383	59.109	0.35523	59.109	58.941	59.297	0					20	12	3	0	0	0	0.3156	1	14415	14415		10.824	0	1	192220			35134	2659	20622	20623	42617	42617					-0.06770117672431297
QENPADHDPI	10	Unmodified	_QENPADHDPI_					0	0	0		ENSG00000115548|ENST00000312912|KDM3A;ENST00000491383.5_1_2:86716620-86718467:+|nuORF;ENST00000470160.1_1_2:86716620-86719239:+|nuORF	ENSG00000115548|ENST00000312912|KDM3A	ENSG00000115548|ENST00000312912|KDM3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8229370117188	2	568.25436	1134.49417	0.39691	0.00022555	1.0643	0.00060477	1.4612	0.00083032	568.2550118906349	58.92	0.38957	59.011	58.849	59.238	0.091301					19	13	2	0	0	0	0.3156	1	14366	14366		6.7232	0	1	176590			35135	2659	20622	20623	42618	42618					-0.06770117672431297
QEPKPYVVA	9	Unmodified	_QEPKPYVVA_					0	0	0			REV__ENST00000474272.1_1_21:34837628-34839441:-|nuORF	REV__ENST00000474272.1_1_21:34837628-34839441:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.248779296875	2	515.782025	1029.5495	-0.092043	-4.7474E-05	-2.8489	-0.0014694	-2.9409	-0.0015169	515.7809113063693	14.808	0.52982	14.743	14.511	15.041	-0.064413					36	18	3	0	0	0	0.26168	1	839	839		1.8442	0.36234	1	88402	+		35136	16107	20623	20624	42619	42619					0.035903405860153725
QEPSRAAASPG	11	Unmodified	_QEPSRAAASPG_					0	0	0			REV__ENSG00000186193|ENST00000409687|SAPCD2	REV__ENSG00000186193|ENST00000409687|SAPCD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2991333007812	2	535.764894	1069.51524	0.25967	0.00013912	-0.024067	-1.2894E-05	0.2356	0.00012623	535.7645987072292	18.14	0.69563	18.082	17.707	18.402	-0.058174					49	24	3	0	0	0	0.3303	1	1840	1840		8.4443	0	1	117760	+		35137	18434	20624	20625	42620	42620					-0.016741075729214572
QEPWHLKKII	10	Unmodified	_QEPWHLKKII_					0	0	0			REV__nc|ENSG00000164542|Q8NCT3-4|MATCAP2	REV__nc|ENSG00000164542|Q8NCT3-4|MATCAP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	646.348388671875	2	646.379697	1290.74484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.156	1	91.157	90.657	91.657	0.00046539								0	0	0	0.37739	1	24183	24183		3.2813	0.78282	1		+		35138	23064	20625	20626	42621	42621					0.11109931110854632
QEQGGHPKF	9	Unmodified	_QEQGGHPKF_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8270874023438	2	514.251423	1026.48829	0.53749	0.0002764	2.7788	0.001429	3.3163	0.0017054	514.2507658678085	32.557	0.21978	32.557	32.5	32.72	0					10	7	2	0	0	0	0.26031	1	6243	6243		3.5965	1.019	1	45265			35139	1970	20626	20627	42622	42622					-0.02389171393451761
QEQLNYLVI	9	Unmodified	_QEQLNYLVI_					0	0	0		ENST00000505994.1_1_4:120315985-120316138:-|nuORF	ENST00000505994.1_1_4:120315985-120316138:-|nuORF	ENST00000505994.1_1_4:120315985-120316138:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3071899414062	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.84	1	104.84	104.34	105.34	0								0	0	0	0.25631	1	27812	27812		4.3292	0.38484	1				35140	11320	20627	20628	42623	42623					0.04261994786179457
QERFMHRWRAW	11	Unmodified	_QERFMHRWRAW_					0	0	0			REV__ENST00000528927.5_1_11:418373-431830:-|nuORF;REV__ENST00000532094.5_1_11:420655-431830:-|nuORF	REV__ENST00000532094.5_1_11:420655-431830:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.93310546875	3	534.933483	1601.77862	-0.54817	-0.00029324	0.64925	0.00034731	0.10108	5.4071E-05	535.2684780853749	34.684	1.8692	34.684	34.247	36.117	0					192	67	4	0	0	0	0.48486	1	6929	6929		0.094841	0	1	992740	+		35141	18355;22028	20628	20629	42624	42624					0.0018002933095431217
QERFMHRWRAW	11	Unmodified	_QERFMHRWRAW_					0	0	0			REV__ENST00000528927.5_1_11:418373-431830:-|nuORF;REV__ENST00000532094.5_1_11:420655-431830:-|nuORF	REV__ENST00000532094.5_1_11:420655-431830:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.9329833984375	3	534.933483	1601.77862	-0.1955	-0.00010458	0.31484	0.00016842	0.11934	6.3838E-05	535.268321586612	34.499	1.8877	34.576	34.138	36.026	0.077377					189	67	5	0	0	0	0.48486	1	6892	6892		0.094841	0	1	1015300	+		35142	18355;22028	20628	20629	42625	42625					0.0018002933095431217
QERIKENFQI	10	Unmodified	_QERIKENFQI_					0	0	0		ENSG00000264006|ENST00000648824|AKR1C8	ENSG00000264006|ENST00000648824|AKR1C8	ENSG00000264006|ENST00000648824|AKR1C8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.5792541503906	3	435.570093	1303.68845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.513	1	22.426	21.926	22.926	-0.087608								0	0	0	0.37398	1	3171	3171		4.7159	0	1				35143	8668	20629	20630	42626	42626					0.04875258483525613
QERIRKLF	8	Unmodified	_QERIRKLF_					0	0	0			REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.31689453125	2	545.330008	1088.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.905	1	89.905	89.405	90.405	0								0	0	0	0.36169	1	23810	23810		9.3474	0	1		+		35144	21799	20630	20631	42627	42627					0.10468533216749165
QERIRKLF	8	Unmodified	_QERIRKLF_					0	0	0			REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3170776367188	2	545.330008	1088.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.449	1	91.449	90.949	91.949	0								0	0	0	0.36169	1	24284	24284		9.3474	0	1		+		35145	21799	20630	20631	42628	42628					0.10468533216749165
QERIRKLF	8	Unmodified	_QERIRKLF_					0	0	0			REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3164672851562	2	545.330008	1088.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.55	1	91.55	91.05	92.05	0								0	0	0	0.36169	1	24314	24314		9.3474	0	1		+		35146	21799	20630	20631	42629	42629					0.10468533216749165
QERIRKLF	8	Unmodified	_QERIRKLF_					0	0	0			REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3181762695312	2	545.330008	1088.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.269	1	94.269	93.769	94.769	0								0	0	0	0.36169	1	25137	25137		9.3474	0	1		+		35147	21799	20630	20631	42630	42630					0.10468533216749165
QERIRKLF	8	Unmodified	_QERIRKLF_					0	0	0			REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.31689453125	2	545.330008	1088.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.125	1	95.125	94.625	95.625	0								0	0	0	0.35014	1	25390	25390		14.582	0	1		+		35148	21799	20630	20631	42631	42631					0.10468533216749165
QERIRKLF	8	Unmodified	_QERIRKLF_					0	0	0			REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.31884765625	2	545.330008	1088.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.133	1	94.22	93.72	94.72	0.08667								0	0	0	0.36169	1	25096	25096		9.3474	0	1		+		35149	21799	20630	20631	42632	42632					0.10468533216749165
QERIRKLF	8	Unmodified	_QERIRKLF_					0	0	0			REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3172607421875	2	545.330008	1088.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.272	1	94.356	93.856	94.856	0.084373								0	0	0	0.36169	1	25139	25139		9.3474	0	1		+		35150	21799	20630	20631	42633	42633					0.10468533216749165
QERIRKLF	8	Unmodified	_QERIRKLF_					0	0	0			REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	REV__ENST00000510192.1_1_4:128814366-128819693:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.317138671875	2	545.330008	1088.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.315	1	91.316	90.816	91.816	0.00046539								0	0	0	0.36169	1	24233	24233		9.3474	0	1		+		35151	21799	20630	20631	42634	42634					0.10468533216749165
QERKRRQKH	9	Unmodified	_QERKRRQKH_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2	nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000080503|P51531-2|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3692016601562	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.7	1	119.73	119.23	120.23	0.027756								0	0	0	0.2672	1	30950	30950		0.52476	0	1				35152	12692;1156	20631	20632	42635	42635					0.1007114448577795
QERSKVKVL	9	Unmodified	_QERSKVKVL_					0	0	0		nc|ENSG00000165113|Q5VSY0-2|GKAP1;ENSG00000165113|ENST00000376371|GKAP1	nc|ENSG00000165113|Q5VSY0-2|GKAP1	nc|ENSG00000165113|Q5VSY0-2|GKAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.8114624023438	2	543.835123	1085.65569	0.16488	8.967E-05	1.6524	0.00089865	1.8173	0.00098832	543.8360889944609	14.595	0.25762	14.595	14.365	14.623	0					12	8	2	0	0	0	0.26168	1	780	780		1.8442	0	1	21761			35153	5926	20632	20633	42636	42636					0.11629096151318663
QERSSVVK	8	Unmodified	_QERSSVVK_					0	0	0			REV__CON__Q6IFX2	REV__CON__Q6IFX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7527770996094	2	466.761623	931.508694	-0.16177	-7.5508E-05	0.41997	0.00019602	0.2582	0.00012052	466.7618987268917	13.817	0.28751	13.751	13.661	13.949	-0.066068					11	9	2	0	0	0	0.34272	1	588	588		7.9102	1.187	1	22133	+	+	35154	13274	20633	20634	42637	42637					0.04019999266392915
QESCRLIEAL	10	Unmodified	_QESCRLIEAL_					0	0	0		ENSG00000119684|ENST00000355774|MLH3;nc|ENSG00000119684|Q9UHC1-2|MLH3;ENST00000555415.1_1_14:75483787-75485735:-|nuORF	ENSG00000119684|ENST00000355774|MLH3	ENSG00000119684|ENST00000355774|MLH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8297729492188	2	581.300255	1160.58596	0.065966	3.8346E-05	1.3267	0.0007712	1.3927	0.00080955	581.300861624628	42.675	0.5715	42.675	42.383	42.954	0					29	20	2	0	0	0	0.31691	1	9361	9361		9.3831	0	1	252390			35155	2896	20634	20635	42638	42638					0.012088494204135714
QETIHASVK	9	Unmodified	_QETIHASVK_					0	0	0			REV__ENST00000472677.1_1_22:50635456-50635792:+|nuORF	REV__ENST00000472677.1_1_22:50635456-50635792:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7747802734375	2	506.774731	1011.53491	0.30088	0.00015248	-0.16254	-8.2373E-05	0.13834	7.0107E-05	506.7745952961698	17.375	0.63233	17.315	17.103	17.736	-0.060429					47	21	3	0	0	0	0.29638	1	1595	1595		9.3831	2.0939	1	241360	+		35156	17591	20635	20636	42639	42639					0.02960268437857394
QETIRNLDCVV	11	Unmodified	_QETIRNLDCVV_					0	0	0		ENSG00000180855|ENST00000301547|ZNF443	ENSG00000180855|ENST00000301547|ZNF443	ENSG00000180855|ENST00000301547|ZNF443	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	645.3290405273438	2	645.329544	1288.64454	-0.13585	-8.7669E-05	-0.73367	-0.00047346	-0.86953	-0.00056113	645.329231745423	35.315	0.37586	35.315	35.144	35.52	0					25	13	3	0	0	0	0.33189	1	7074	7074		19.362	0	1	226250			35157	7207	20636	20637	42640	42640					0.01175905994864479
QETIRVTK	8	Unmodified	_QETIRVTK_					0	0	0		ENSG00000110492|ENST00000395566|MDK;nc|ENSG00000110492|P21741-2|MDK	ENSG00000110492|ENST00000395566|MDK	ENSG00000110492|ENST00000395566|MDK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7851867675781	2	487.785099	973.555644	0.61286	0.00029895	-0.3641	-0.0001776	0.24877	0.00012135	487.78490060238596	20.451	0.4416	20.398	20.254	20.695	-0.05291					38	15	3	0	0	0	0.39068	1	2586	2586		20.454	1.1966	1	284880			35158	2314	20637	20638	42641	42641					0.0678085881751258
QEVAKQLGLK	10	Unmodified	_QEVAKQLGLK_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2823486328125	2	557.334956	1112.65536	-0.071181	-3.9672E-05	-1.6174	-0.00090141	-1.6885	-0.00094109	557.3343316672016	39.009	0.42033	39.009	38.873	39.294	0					22	14	2	0	0	0	0.22377	1	8213	8213		29.841	11.694	1	267420			35159	7427	20638	20639	42642	42642					0.10353676431441272
QEVAKQLGLK	10	Unmodified	_QEVAKQLGLK_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2825927734375	2	557.334956	1112.65536	0.21948	0.00012233	-1.657	-0.00092351	-1.4375	-0.00080118	557.3341147583283	38.947	0.31281	39.04	38.888	39.201	0.092674					19	10	2	0	0	0	0.27529	1	8144	8144		18.373	1.2602	1	319070			35160	7427	20638	20639	42643	42643					0.10353676431441272
QEVAKQLGLK	10	Unmodified	_QEVAKQLGLK_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2827758789062	2	557.334956	1112.65536	0.42299	0.00023575	-2.2146	-0.0012343	-1.7916	-0.00099854	557.333844973981	38.931	0.36693	39.031	38.869	39.236	0.099407					20	12	2	0	0	0	0.25117	1	8120	8120		29.841	16.798	1	395690			35161	7427	20638	20639	42644	42644					0.10353676431441272
QEVKHELK	8	Unmodified	_QEVKHELK_					0	0	0		ENSG00000140015|ENST00000322893|KCNH5	ENSG00000140015|ENST00000322893|KCNH5	ENSG00000140015|ENST00000322893|KCNH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7746887207031	2	505.785099	1009.55564	0.10701	5.4122E-05	1.9179	0.00097005	2.0249	0.0010242	505.78547124484663	18.067	0.69361	17.95	17.573	18.267	-0.11739					50	21	3	0	0	0	0.45431	1	1870	1870		4.3292	0	1	203670			35162	4277	20639	20640	42645	42645					0.05124858817521272
QEWQNLVTFGS	11	Unmodified	_QEWQNLVTFGS_					0	0	0		ENST00000510460.1_1_4:41992668-42022533:+|nuORF;ENSG00000014824|ENST00000264451|SLC30A9	ENST00000510460.1_1_4:41992668-42022533:+|nuORF	ENST00000510460.1_1_4:41992668-42022533:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.89459228515625	3	436.878815	1307.61462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.621	1	19.565	19.065	20.065	-0.055693								0	0	0	0.35365	1	2288	2288		7.4291	0.80562	1				35163	475	20640	20641	42646	42646					-0.026887096788186682
QEYDKMRDF	9	Unmodified	_QEYDKMRDF_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.1897888183594	3	411.185251	1230.53392	0.26629	0.00010949	-1.4404	-0.00059227	-1.1741	-0.00048278	411.1844920135273	38.635	0.49777	38.733	38.517	39.015	0.097527					23	17	2	0	0	0	0.25346	1	8111	8111		10.8	4.6077	1	144550			35164	7088	20641	20642	42647	42647					-0.0721231399336375
QEYDKMRDF	9	Unmodified	_QEYDKMRDF_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.185251	1230.53392	0.16242	6.6786E-05	-0.52514	-0.00021593	-0.36271	-0.00014914	411.1845841373346	38.727	0.42988	38.818	38.542	38.972	0.090881	0.042337	0.00061666	NaN	10.8	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169970			35165	7088	20641	20642							-0.0721231399336375
QEYLVPIRM	9	Unmodified	_QEYLVPIRM_					0	0	0			REV__ENSG00000129566|ENST00000262715|TEP1	REV__ENSG00000129566|ENST00000262715|TEP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.830322265625	2	574.810259	1147.60597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.026	1	11.929	11.429	12.429	-0.096607								0	0	0	0.2489	1	6	6		6.7232	1.4925	1		+		35166	15421	20642	20643	42648	42648					0.03806645151007615
QEYQAQKA	8	Unmodified	_QEYQAQKA_					0	0	0		ENSG00000113048|ENST00000261413|MRPS27;nc|ENSG00000113048|Q92552-2|MRPS27;ENST00000515226.5_1_5:71516738-71522904:-|nuORF	ENSG00000113048|ENST00000261413|MRPS27	ENSG00000113048|ENST00000261413|MRPS27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.1981506347656	2	483.237981	964.461409	0.14188	6.8561E-05	-1.5558	-0.00075182	-1.4139	-0.00068326	483.2369620224723	22.426	0.3745	22.338	22.086	22.461	-0.08761					19	13	2	0	0	0	0.34408	1	3108	3108		2.3027	0	1	31793			35167	2472	20643	20644	42649	42649					-0.022242800046228695
QEYQAQKA	8	Unmodified	_QEYQAQKA_					0	0	0		ENSG00000113048|ENST00000261413|MRPS27;nc|ENSG00000113048|Q92552-2|MRPS27;ENST00000515226.5_1_5:71516738-71522904:-|nuORF	ENSG00000113048|ENST00000261413|MRPS27	ENSG00000113048|ENST00000261413|MRPS27	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	483.237981	964.461409	0.095756	4.6273E-05	-1.5783	-0.00076271	-1.4826	-0.00071643	483.23732928118176	22.24	0.37025	22.24	22.076	22.446	0	-0.049056	-1.4226E-05	NaN	2.3027	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40572			35168	2472	20643	20644							-0.022242800046228695
QFAFHLQTI	9	Unmodified	_QFAFHLQTI_					0	0	0			REV__ENST00000599392.1_1_19:46282503-46282825:-|nuORF	REV__ENST00000599392.1_1_19:46282503-46282825:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2578125	2	552.795466	1103.57638	0.49149	0.00027169	2.8002	0.0015479	3.2916	0.0018196	553.2993730739698	65.6	0.29671	65.589	65.53	65.827	-0.011337					13	10	2	0	0	0	0.2322	1	16387	16387		14.838	0	1	86008	+		35169	14429	20644	20645	42650	42650					0.028734491971817988
QFALASHFF	9	Unmodified	_QFALASHFF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2697143554688	2	534.269084	1066.52362	0.48638	0.00025986	0.20163	0.00010773	0.68801	0.00036758	534.2690844208463	68.09	0.47621	68.073	67.811	68.287	-0.016296					28	16	2	0	0	0	0.034444	1	17124	17124		58.679	36.932	1	231740			35170	4211	20645	20646	42651	42651					-0.006985088656165317
QFDSDNVLVAL	11	Unmodified	_QFDSDNVLVAL_					0	0	0			REV__nc|ENSG00000165731|P07949-2|RET	REV__nc|ENSG00000165731|P07949-2|RET	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5561218261719	3	407.543432	1219.60847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.959	1	37.959	37.459	38.459	0								0	0	0	0.3134	1	7868	7868		16.275	4.7798	1		+		35171	17262	20646	20647	42652	42652					0.007447720896834653
QFDSDNVLVAL	11	Unmodified	_QFDSDNVLVAL_					0	0	0			REV__nc|ENSG00000165731|P07949-2|RET	REV__nc|ENSG00000165731|P07949-2|RET	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5561218261719	3	407.543432	1219.60847	-0.040621	-1.6555E-05	-3.9348	-0.0016036	-3.9755	-0.0016202	407.877120618623	38.093	0.16214	38.093	37.956	38.118	0					6	5	2	0	0	0	0.3232	1	7868	7868		16.275	4.7798	1	35795	+		35172	17262	20646	20647	42653	42653					0.007447720896834653
QFDVLEFRVG	10	Unmodified	_QFDVLEFRVG_					0	0	0		CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant;CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant;CUBN|p.K3401Rfs*11|1|0.02|ENSG00000107611|chr10:16835174-16835175|-/TTTTGAATGATTCC|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN	CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant	CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.7683715820312	2	605.316763	1208.61897	0.19233	0.00011642	1.0309	0.00062402	1.2232	0.00074044	605.3175486133906	57.449	0.38477	57.432	57.197	57.582	-0.0172					29	13	4	0	0	0	0.31745	1	13877	13877		8.7454	2.0222	1	369960			35173	249	20647	20648	42654	42654					0.023007995347370525
QFEGLMRF	8	Unmodified	_QFEGLMRF_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.780029296875	2	514.25512	1026.49569	0.11281	5.8011E-05	-0.93498	-0.00048082	-0.82217	-0.00042281	514.7565402481515	40.716	0.13548	40.815	40.724	40.86	0.099407					5	4	2	0	0	0	0.34092	1	8694	8694		13.508	6.7847	1	124770			35174	7645	20648	20649	42655	42655					-0.016501551173632834
QFEGLMRF	8	Unmodified	_QFEGLMRF_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	514.25512	1026.49569	0.11031	5.6728E-05	-1.1707	-0.00060206	-1.0604	-0.00054533	514.2552625850751	40.998	0.2217	40.998	40.875	41.096	0	0.09117	-8.2197E-05	NaN	13.508	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92937			35175	7645	20648	20649							-0.016501551173632834
QFFTLRIDA	9	Unmodified	_QFFTLRIDA_					0	0	0			REV__ENSG00000271447|ENST00000605424|MMP28	REV__ENSG00000271447|ENST00000605424|MMP28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8289794921875	2	555.800749	1109.58694	-0.033868	-1.8824E-05	1.6927	0.00094083	1.6589	0.000922	555.8032225471086	12.699	0.29181	12.699	12.555	12.847	0					23	9	3	0	0	0	0.26031	1	228	228		3.5965	1.2938	1	24743	+		35176	19313	20649	20650	42656	42656					0.0365343185162601
QFIAIPPRD	9	Unmodified	_QFIAIPPRD_					0	0	0			REV__ENSG00000073067|ENST00000308919|CYP2W1	REV__ENSG00000073067|ENST00000308919|CYP2W1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2755126953125	2	528.795466	1055.57638	0.3434	0.00018159	1.7064	0.00090232	2.0498	0.0010839	528.7962235862145	46.307	0.21161	46.366	46.236	46.448	0.059837					12	7	2	0	0	0	0.22596	1	10439	10439		21.747	10.106	1	300190	+		35177	13771	20650	20651	42657	42657					0.0508144919717779
QFIWERFD	8	Unmodified	_QFIWERFD_					0	0	0			REV__ENSG00000105707|ENST00000672452|HPN	REV__ENSG00000105707|ENST00000672452|HPN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.2958984375	2	570.777274	1139.53999	0.46104	0.00026315	0.56642	0.0003233	1.0275	0.00058645	571.279319316809	56.911	1.4972	56.891	56.429	57.926	-0.019077					108	54	3	0	0	0	0.3366	1	13994	13994		18.135	6.4947	1	895540	+		35178	14482	20651	20652	42658	42658					-0.024194276995331165
QFKRAQLNGSL	11	Unmodified	_QFKRAQLNGSL_					0	0	0			REV__ENST00000436842.5_1_2:3599790-3605539:-|nuORF	REV__ENST00000436842.5_1_2:3599790-3605539:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.575439453125	3	421.238566	1260.69387	0.39353	0.00016577	0.38989	0.00016424	0.78342	0.00033001	421.2384390485231	33.53	0.99535	33.596	33.295	34.29	0.06636					117	35	4	0	0	0	0.21521	1	6632	6632		23.964	0	1	2661500	+		35179	21011	20652	20653	42659	42659					0.07394982065989097
QFKRAQLNGSL	11	Unmodified	_QFKRAQLNGSL_					0	0	0			REV__ENST00000436842.5_1_2:3599790-3605539:-|nuORF	REV__ENST00000436842.5_1_2:3599790-3605539:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5762939453125	3	421.238566	1260.69387	-0.10767	-4.5354E-05	0.665	0.00028013	0.55734	0.00023477	421.23851300242717	33.528	0.96447	33.595	33.245	34.209	0.066704					98	34	4	0	0	0	0.089036	1	6653	6653		28.181	6.0724	1	2470400	+		35180	21011	20652	20653	42660	42660					0.07394982065989097
QFKSEYSNL	9	Unmodified	_QFKSEYSNL_					0	0	0		nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	nc|ENSG00000139734|Q9NSV4-7|DIAPH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3566284179688	2	558.272021	1114.52949	0.74694	0.00041699	-0.13037	-7.2781E-05	0.61657	0.00034421	558.2718251079494	50.599	0.70451	50.599	50.326	51.03	0					73	25	4	0	0	0	0.25526	1	11877	11877		4.3292	0	1	1535500			35181	4263	20653	20654	42661	42661					-0.023194551446067635
QFKVARRTRKK	11	Unmodified	_QFKVARRTRKK_					0	0	0			REV__ENSG00000114391|ENST00000394077|RPL24	REV__ENSG00000114391|ENST00000394077|RPL24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.2995300292969	3	473.300271	1416.87898	-0.0038956	-1.8438E-06	-1.1543	-0.00054633	-1.1582	-0.00054817	473.29948442565916	101.36	1.1717	101.38	101.04	102.21	0.027214					486	160	4	0	0	0	0.33303	1	27013	27013		2.4348	0.52841	1	1575900	+		35182	14832	20654	20655	42662	42662					0.18722009656244154
QFKVARRTRKK	11	Unmodified	_QFKVARRTRKK_					0	0	0			REV__ENSG00000114391|ENST00000394077|RPL24	REV__ENSG00000114391|ENST00000394077|RPL24	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	473.300271	1416.87898	-0.29219	-0.00013829	-1.3868	-0.00065637	-1.679	-0.00079466	473.29963590718796	101.56	0.94205	101.56	101.27	102.21	0	0.046391	-6.7837E-06	NaN	2.4348	306	126	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	920570	+		35183	14832	20654	20655							0.18722009656244154
QFKVARRTRKK	11	Unmodified	_QFKVARRTRKK_					0	0	0			REV__ENSG00000114391|ENST00000394077|RPL24	REV__ENSG00000114391|ENST00000394077|RPL24	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	473.300271	1416.87898	0.18045	8.5407E-05	-1.4296	-0.00067663	-1.2492	-0.00059123	473.2993904419843	101.6	1.547	101.6	100.81	102.36	-0.0054703	0.084212	-6.7575E-05	NaN	2.4348	625	217	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2678700	+		35184	14832	20654	20655							0.18722009656244154
QFKVKKLSIC	10	Unmodified	_QFKVKKLSIC_					0	0	0			REV__nc|ENSG00000166974|Q15555-4|MAPRE2	REV__nc|ENSG00000166974|Q15555-4|MAPRE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8583984375	2	597.357376	1192.7002	0.5263	0.00031439	0.94113	0.00056219	1.4674	0.00087658	597.3585424498953	90.185	1.4279	90.185	89.495	90.923	0					313	115	4	0	0	0	0.40262	1	24002	24002		2.9952	0.26005	1	1038300	+		35185	17353	20655	20656	42663	42663					0.11155783973185862
QFKYGNQL	8	Unmodified	_QFKYGNQL_					0	0	0		nc|ENSG00000166508|P33993-2|MCM7;ENSG00000166508|ENST00000303887|MCM7;ENST00000463722.5_1_7:99697202-99698956:-|nuORF	nc|ENSG00000166508|P33993-2|MCM7	nc|ENSG00000166508|P33993-2|MCM7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2588806152344	2	499.258717	996.50288	0.3498	0.00017464	0.040913	2.0426E-05	0.39071	0.00019506	499.2593247082668	55.403	3.3198	55.403	55.008	58.328	0					295	121	5	0	0	0	0.3671	1	13597	13597		23.148	3.8914	1	73217000			35186	6088	20656	20657	42664	42664					0.004489007547249457
QFKYGNQL	8	Unmodified	_QFKYGNQL_					0	0	0		nc|ENSG00000166508|P33993-2|MCM7;ENSG00000166508|ENST00000303887|MCM7;ENST00000463722.5_1_7:99697202-99698956:-|nuORF	nc|ENSG00000166508|P33993-2|MCM7	nc|ENSG00000166508|P33993-2|MCM7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2590637207031	2	499.258717	996.50288	0.59054	0.00029483	-0.14228	-7.1036E-05	0.44826	0.0002238	499.2592235829054	55.339	3.2094	55.41	55.028	58.237	0.070885					312	118	5	0	0	0	0.3671	1	13567	13567		23.148	0.41214	1	75175000			35187	6088	20656	20657	42665	42665					0.004489007547249457
QFLCRPIA	8	Unmodified	_QFLCRPIA_					0	0	0		ENST00000485515.5_1_1:17349209-17350484:-|nuORF	ENST00000485515.5_1_1:17349209-17350484:-|nuORF	ENST00000485515.5_1_1:17349209-17350484:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7294616699219	2	474.260205	946.505857	0.21831	0.00010354	-1.2732	-0.00060385	-1.0549	-0.00050031	474.25945244062694	51.468	0.79889	51.468	51.198	51.997	0					62	29	3	0	0	0	0.34218	1	11938	11938		9.3474	4.1168	1	1233200			35188	11090	20657	20658	42666	42666					0.030464526078503695
QFLGQMCLEF	10	Unmodified	_QFLGQMCLEF_					0	0	0			REV__ENST00000554859.1_1_14:102263222-102276628:-|nuORF	REV__ENST00000554859.1_1_14:102263222-102276628:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.2803344726562	2	608.280477	1214.5464	0.47452	0.00028864	-0.63774	-0.00038793	-0.16322	-9.9284E-05	608.2805781618902	52.794	0.5121	52.794	52.55	53.062	0					36	18	3	0	0	0	0.19885	1	12413	12413		32.786	2.1491	1	572610	+		35189	22240	20658	20659	42667	42667					-0.05228993854689179
QFLGQMCLEF	10	Unmodified	_QFLGQMCLEF_					0	0	0			REV__ENST00000554859.1_1_14:102263222-102276628:-|nuORF	REV__ENST00000554859.1_1_14:102263222-102276628:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.85614013671875	3	405.856077	1214.5464	0.12815	5.201E-05	-0.014374	-5.8337E-06	0.11377	4.6176E-05	405.85602762098995	52.785	0.51394	52.835	52.523	53.037	0.050571					45	18	3	0	0	0	0.33104	1	12405	12405		10.315	0	1	834330	+		35190	22240	20658	20659	42668	42668					-0.05228993854689179
QFLGQMCLEF	10	Unmodified	_QFLGQMCLEF_					0	0	0			REV__ENST00000554859.1_1_14:102263222-102276628:-|nuORF	REV__ENST00000554859.1_1_14:102263222-102276628:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.2806396484375	2	608.280477	1214.5464	0.64553	0.00039266	-0.35062	-0.00021327	0.29491	0.00017939	608.2804739175042	52.769	0.7734	52.82	52.494	53.267	0.050575					42	27	2	0	0	0	0.2623	1	12407	12407		32.786	11.039	1	558820	+		35191	22240	20658	20659	42669	42669					-0.05228993854689179
QFLLKDEIKQ	10	Unmodified	_QFLLKDEIKQ_					0	0	0			REV__ENSG00000205978|ENST00000382554|NYNRIN	REV__ENSG00000205978|ENST00000382554|NYNRIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2564392089844	3	421.243206	1260.70779	-0.20948	-8.8241E-05	0.33745	0.00014215	0.12797	5.3906E-05	421.2433257619652	14.869	2.2812	14.759	14.391	16.672	-0.10981					221	79	5	0	0	0	0.27105	1	1262	1262		23.964	1.8553	1	857330	+		35192	19012	20659	20660	42670	42670					0.08786214774409018
QFLLSRAL	8	Unmodified	_QFLLSRAL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7294006347656	2	474.287277	946.560001	0.37913	0.00017981	-0.37064	-0.00017579	0.0084826	4.0232E-06	474.28698690706256	51.222	0.25412	51.231	51.119	51.373	0.0095634					13	9	2	0	0	0	0.34039	1	11948	11948		15.847	0	1	171590			35193	441	20660	20661	42671	42671					0.08458368031085683
QFLPTPQLL	9	Unmodified	_QFLPTPQLL_					0	0	0		ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8084716796875	2	528.808042	1055.60153	0.47829	0.00025292	-0.77615	-0.00041043	-0.29786	-0.00015751	528.8076009981736	81.416	0.40389	81.416	81.204	81.608	0					40	17	3	0	0	0	0.10059	3	21180	21180;21235;21261		38.176	0	1	332010			35194	3086	20661	20662	42672;42673;42674	42672					0.07595503999755238
QFLPTPQLL	9	Unmodified	_QFLPTPQLL_					0	0	0		ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8085327148438	2	528.808042	1055.60153	0.11223	5.935E-05	-0.46302	-0.00024485	-0.35079	-0.0001855	528.8077888546846	81.377	0.4111	81.446	81.213	81.624	0.068993					50	21	3	0	0	0	0.10059	1	21219	21219		38.176	0	1	342670			35195	3086	20661	20662	42675	42675					0.07595503999755238
QFLPTPQLL	9	Unmodified	_QFLPTPQLL_					0	0	0		ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8087768554688	2	528.808042	1055.60153	0.49619	0.00026239	1.4317	0.00075707	1.9279	0.0010195	528.8080152599468	81.489	0.74678	81.465	80.89	81.637	-0.02404					56	33	3	0	0	0	0.023967	1	21178	21178		62.573	8.7399	1	373040			35196	3086	20661	20662	42676	42676					0.07595503999755238
QFLQKPQK	8	Unmodified	_QFLQKPQK_					0	0	0		nc|ENSG00000214198|Q6P2S7-3|TTC41P;ENST00000548897.1_2_12:104309228-104309675:-|nuORF;nc|ENSG00000214198|Q6P2S7-2|TTC41P;nc|ENSG00000214198|Q6P2S7|TTC41P	nc|ENSG00000214198|Q6P2S7-3|TTC41P	nc|ENSG00000214198|Q6P2S7-3|TTC41P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7688293457031	2	508.798009	1015.58147	0.211	0.00010736	-2.6693	-0.0013581	-2.4583	-0.0012508	508.79685927044176	16.484	0.50583	16.484	16.214	16.72	0					23	17	2	0	0	0	0.34353	1	1358	1358		4.756	0	1	48954			35197	11781	20662	20663	42677	42677					0.07429753059795985
QFLQKRSLTY	10	Unmodified	_QFLQKRSLTY_					0	0	0			REV__ENSG00000133858|ENST00000378743|ZFC3H1	REV__ENSG00000133858|ENST00000378743|ZFC3H1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.3617553710938	2	642.358962	1282.70337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.86	1	104.86	104.36	105.36	0								0	0	0	0.37739	1	27817	27817		3.2813	0.54611	1		+		35198	15640	20663	20664	42678	42678					0.0733275035152019
QFLVDHESRQ	10	Unmodified	_QFLVDHESRQ_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.7581787109375	2	629.812376	1257.6102	0.094463	5.9494E-05	-0.30554	-0.00019243	-0.21108	-0.00013294	630.3136753337758	69.765	0.4681	69.831	69.692	70.16	0.06604					19	16	2	0	0	0	0.31889	1	17608	17608		6.2058	0	1	110920	+		35199	17788	20664	20665	42679	42679					-0.008301741017248787
QFLVKNFIQ	9	Unmodified	_QFLVKNFIQ_					0	0	0			REV__ENST00000418194.6_1_2:174774769-174774829:-|nuORF	REV__ENST00000418194.6_1_2:174774769-174774829:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.8450317382812	2	568.826766	1135.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.938	1	34.004	33.504	34.504	0.066704								0	0	0	0.22377	1	6632	6632		14.838	0.93222	1		+		35200	20833	20665	20666	42680	42680					0.07658595265365875
QFNPGSFG	8	Unmodified	_QFNPGSFG_					0	0	0			REV__nc|ENSG00000114770|O15440-4|ABCC5	REV__nc|ENSG00000114770|O15440-4|ABCC5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.2081604003906	2	427.195585	852.376617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.837	1	49.882	49.382	50.382	0.044891								0	0	0	0.36961	1	11511	11511		5.7604	0.52976	1		+		35201	22956	20666	20667	42681	42681					-0.05547605750552975
QFPENNWI	8	Unmodified	_QFPENNWI_					0	0	0		ENST00000569553.1_1_16:46992902-46993307:-|nuORF;ENSG00000069345|ENST00000317089|DNAJA2	ENST00000569553.1_1_16:46992902-46993307:-|nuORF	ENST00000569553.1_1_16:46992902-46993307:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2987670898438	2	524.248349	1046.48214	0.048693	2.5527E-05	1.1031	0.00057831	1.1518	0.00060384	524.2488511826133	12.726	0.24272	12.659	12.548	12.791	-0.067496					10	7	2	0	0	0	0.34378	1	196	196		3.9444	1.6417	1	25872			35202	904	20667	20668	42682	42682					-0.0392368962495766
QFPSRNNPQQ	10	Unmodified	_QFPSRNNPQQ_					0	0	0		ENST00000284006.10_1_19:34305159-34305372:+|nuORF	ENST00000284006.10_1_19:34305159-34305372:+|nuORF	ENST00000284006.10_1_19:34305159-34305372:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.2807006835938	2	608.296893	1214.57923	0.2097	0.00012756	2.5311	0.0015396	2.7408	0.0016672	608.7999706298021	52.601	0.81881	52.601	52.246	53.065	-0.00080872					41	29	2	0	0	0	0.33817	1	12437	12437		14.838	0.93222	1	442660			35203	9136	20668	20669	42683	42683					-0.01947327415973632
QFPSRNNPQQ	10	Unmodified	_QFPSRNNPQQ_					0	0	0		ENST00000284006.10_1_19:34305159-34305372:+|nuORF	ENST00000284006.10_1_19:34305159-34305372:+|nuORF	ENST00000284006.10_1_19:34305159-34305372:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	608.296893	1214.57923	0.43816	0.00026653	2.1071	0.0012817	2.5453	0.0015483	608.2983896313774	52.471	0.69385	52.471	52.049	52.743	0	-0.043868	-0.00037226	NaN	14.838	38	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419320			35204	9136	20668	20669							-0.01947327415973632
QFPSRNNPQQ	10	Unmodified	_QFPSRNNPQQ_					0	0	0		ENST00000284006.10_1_19:34305159-34305372:+|nuORF	ENST00000284006.10_1_19:34305159-34305372:+|nuORF	ENST00000284006.10_1_19:34305159-34305372:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	608.296893	1214.57923	0.48006	0.00029202	2.5492	0.0015507	3.0293	0.0018427	608.2985394163898	52.422	0.76183	52.472	52.06	52.822	0.050571	-0.04224	0.00016565	NaN	14.838	40	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360570			35205	9136	20668	20669							-0.01947327415973632
QFREEFNSLPS	11	Unmodified	_QFREEFNSLPS_					0	0	0		nc|ENSG00000132334|P23469-3|PTPRE;nc|ENSG00000132334|P23469-2|PTPRE;ENSG00000132334|ENST00000254667|PTPRE	nc|ENSG00000132334|P23469-3|PTPRE	nc|ENSG00000132334|P23469-3|PTPRE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.5650329589844	3	451.88597	1352.63608	-0.14982	-6.7703E-05	1.1136	0.00050321	0.96376	0.00043551	452.22130299015765	13.539	0.17284	13.539	13.457	13.63	0					8	5	2	0	0	0	0.33274	1	441	441		3.5927	1.1579	1	20171			35206	3621	20669	20670	42684	42684					-0.02613324650087634
QFRRLWRRIR	10	Unmodified	_QFRRLWRRIR_					0	0	0			REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ	REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2541198730469	3	496.304127	1485.89055	0.21336	0.00010589	-0.68655	-0.00034074	-0.47319	-0.00023485	496.30371644512593	28.978	0.26876	28.992	28.818	29.087	0.013475					15	9	2	0	0	0	0.3213	1	5079	5079		1.9064	0.57673	1	92715	+		35207	16180	20670	20671	42685	42685					0.16704251470241616
QFSCNLYWPN	10	Unmodified	_QFSCNLYWPN_					0	0	0		ENST00000261712.7_1_17:30807923-30808019:+|nuORF	ENST00000261712.7_1_17:30807923-30808019:+|nuORF	ENST00000261712.7_1_17:30807923-30808019:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.3084716796875	2	636.279323	1270.54409	0.79647	0.00050678	-0.11148	-7.093E-05	0.685	0.00043585	636.279275495204	45.737	0.41338	45.802	45.595	46.008	0.065048					25	14	2	0	0	0	0.31958	1	10206	10206		5.2969	1.3525	1	364530			35208	8973	20671	20672	42686	42686					-0.08035706268128706
QFSDNKEPQ	9	Unmodified	_QFSDNKEPQ_					0	0	0			REV__ENST00000508157.3_1_5:70790975-70807035:+|nuORF;REV__nc|ENSG00000145734|A6H8Y1-4|BDP1	REV__ENST00000508157.3_1_5:70790975-70807035:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.765869140625	2	546.751453	1091.48835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.131	1	26.109	25.609	26.609	-0.022238								0	0	0	0.23182	1	4259	4259		12.241	2.1667	1		+		35209	21769;13127	20672	20673	42687	42687					-0.05373216184102603
QFSRNRFYL	9	Unmodified	_QFSRNRFYL_					0	0	0			REV__nc|ENSG00000104055|O43548-2|TGM5	REV__nc|ENSG00000104055|O43548-2|TGM5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.88421630859375	3	410.884123	1229.63054	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.043	1	20.043	19.543	20.543	0								0	0	0	0.25674	1	2417	2417		4.1895	0	1		+		35210	14393	20673	20674	42688	42688					0.024910413487759797
QFVFDTMDL	9	Unmodified	_QFVFDTMDL_					0	0	0			REV__ENSG00000166747|ENST00000299980|AP1G1	REV__ENSG00000166747|ENST00000299980|AP1G1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.356201171875	2	558.257525	1114.5005	0.49636	0.0002771	-1.7913	-0.001	-1.295	-0.00072292	558.2563233311342	51.183	0.27206	51.183	51.055	51.327	0					13	9	2	0	0	0	0.25202	1	11928	11928		6.7232	0	1	165700	+		35211	17336	20674	20675	42689	42689					-0.05217315765275998
QFVPKSHLF	9	Unmodified	_QFVPKSHLF_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8070678710938	2	551.805834	1101.59712	0.35011	0.00019319	1.7972	0.0009917	2.1473	0.0011849	551.8065002504745	43.341	0.65421	43.341	43.087	43.741	0					41	23	2	0	0	0	0.0023784	2	9511	9511;9563		107.19	62.78	1	855250			35212	808	20675	20676	42690;42691	42690					0.05038039576857045
QFVPKSHLF	9	Unmodified	_QFVPKSHLF_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8067626953125	2	551.805834	1101.59712	0.53256	0.00029387	1.1561	0.00063796	1.6887	0.00093182	551.806501993354	43.105	0.60081	43.186	42.918	43.519	0.081387					52	21	3	0	0	0	0.0023784	1	9431	9431		107.19	58.841	1	1079800			35213	808	20675	20676	42692	42692					0.05038039576857045
QFVPKSHLF	9	Unmodified	_QFVPKSHLF_					0	0	0		ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	ENSG00000065183|ENST00000349139|WDR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8065795898438	2	551.805834	1101.59712	0.24924	0.00013753	1.3127	0.00072438	1.562	0.00086191	551.8066690273979	43.057	0.7045	43.144	42.875	43.579	0.087414					64	25	3	0	0	0	0.0042343	2	9408	9408;9463		92.491	62.267	1	992470			35214	808	20675	20676	42693;42694	42693					0.05038039576857045
QFVRHCADHF	10	Unmodified	_QFVRHCADHF_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8599853515625	2	630.290556	1258.56656	0.593	0.00037376	-0.77806	-0.0004904	-0.18506	-0.00011664	630.2899254543694	84.526	0.54872	84.526	84.301	84.85	0					49	19	3	0	0	0	0.32054	1	22178	22178		3.2813	0.28607	1	403470			35215	8126	20676	20677	42695	42695					-0.05238062079865813
QFWFLRKS	8	Unmodified	_QFWFLRKS_					0	0	0		ENST00000346333.10_2_11:71510876-71510927:+|nuORF;ENST00000497543.5_1_3:75471615-75471942:-|nuORF	ENST00000346333.10_2_11:71510876-71510927:+|nuORF	ENST00000346333.10_2_11:71510876-71510927:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.318359375	2	556.306001	1110.59745	0.2756	0.00015332	-0.2124	-0.00011816	0.063197	3.5157E-05	556.3059765894096	16.741	0.6083	16.678	16.468	17.077	-0.062534					36	21	2	0	0	0	0.46092	1	1519	1519		2.0598	0.21551	1	105310			35216	9564	20677	20678	42696	42696					0.04657459296709021
QGAKEKNIL	9	Unmodified	_QGAKEKNIL_					0	0	0			REV__nc|ENSG00000068903|Q8IXJ6-2|SIRT2	REV__nc|ENSG00000068903|Q8IXJ6-2|SIRT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.27923583984375	2	500.792924	999.571294	0.11792	5.9052E-05	1.7506	0.0008767	1.8685	0.00093575	501.2944927964996	62.179	1.043	62.276	61.592	62.635	0.096985					54	37	2	0	0	0	0.24289	1	15166	15166		18.146	1.2041	1	152680	+		35217	13708	20678	20679	42697	42697					0.07149145334562945
QGALLATFPN	10	Unmodified	_QGALLATFPN_					0	0	0			REV__ENSG00000175518|ENST00000380184|UBQLNL	REV__ENSG00000175518|ENST00000380184|UBQLNL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7982177734375	2	516.279649	1030.54475	-0.043199	-2.2303E-05	-2.5005	-0.0012909	-2.5437	-0.0013132	516.2787452345178	12.857	0.22948	12.758	12.611	12.841	-0.099291					16	7	3	0	0	0	0.3144	1	271	271		13.042	1.4022	1	37035	+		35218	17894	20679	20680	42698	42698					0.030694564432451443
QGEEVTLDVL	10	Unmodified	_QGEEVTLDVL_					0	0	0			REV__ENSG00000154310|ENST00000436636|TNIK	REV__ENSG00000154310|ENST00000436636|TNIK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.3008422851562	2	551.784961	1101.55537	0.33123	0.00018277	3.5267	0.001946	3.8579	0.0021288	552.2882275548553	17.509	0.27209	17.509	17.296	17.568	0					11	9	2	0	0	0	0.3641	1	1616	1616		10.074	0.6908	1	34809	+		35219	16660	20680	20681	42699	42699					0.008653943069930392
QGEFWELRALL	11	Unmodified	_QGEFWELRALL_					0	0	0			REV__ENSG00000182791|ENST00000333861|CCDC87	REV__ENSG00000182791|ENST00000333861|CCDC87	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.7397766113281	3	454.578588	1360.71394	0.7789	0.00035407	-0.89015	-0.00040464	-0.11125	-5.0572E-05	454.9123649748797	50.291	0.27655	50.336	50.185	50.461	0.044891					12	9	2	0	0	0	0.33189	1	11647	11647		3.5927	1.1579	1	180610	+		35220	18218	20681	20682	42700	42700					0.04800733005959046
QGELLPFLN	9	Unmodified	_QGELLPFLN_					0	0	0			REV__nc|ENSG00000140538|Q16288-2|NTRK3	REV__nc|ENSG00000140538|Q16288-2|NTRK3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.8005981445312	2	515.782025	1029.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.885	1	57.885	57.385	58.385	0								0	0	0	0.16485	1	13999	13999		31.268	2.1868	1		+		35221	16042	20682	20683	42701	42701					0.035903405860153725
QGELLPFLN	9	Unmodified	_QGELLPFLN_					0	0	0			REV__nc|ENSG00000140538|Q16288-2|NTRK3	REV__nc|ENSG00000140538|Q16288-2|NTRK3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.80078125	2	515.782025	1029.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.552	1	57.638	57.138	58.138	0.085621								0	0	0	0.19534	1	13892	13892		24.021	1.2843	1		+		35222	16042	20682	20683	42702	42702					0.035903405860153725
QGEYFNLA	8	Unmodified	_QGEYFNLA_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.21893310546875	2	471.2218	940.429047	0.16739	7.888E-05	-3.5941	-0.0016936	-3.4268	-0.0016148	471.22064115948683	67.231	1.8224	67.309	66.128	67.951	0.078041					79	64	2	0	0	0	0.4397	1	16887	16887		9.3474	0.75416	1	200080	+		35223	17201	20683	20684	42703	42703					-0.043550674076186624
QGFLHRHS	8	Unmodified	_QGFLHRHS_					0	0	0		ENST00000263269.3_1_19:48917790-48922905:+|nuORF	ENST00000263269.3_1_19:48917790-48922905:+|nuORF	ENST00000263269.3_1_19:48917790-48922905:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2458190917969	2	491.2543	980.494047	-0.068194	-3.3501E-05	-1.9158	-0.00094114	-1.984	-0.00097464	491.25332580191815	27.872	1.1078	27.872	27.302	28.41	0.0004673					107	38	4	0	0	0	0.45169	1	4925	4925		5.2307	0.47466	1	858250			35224	9003	20684	20685	42704	42704					0.003019719089024875
QGGDFLKVF	9	Unmodified	_QGGDFLKVF_					0	0	0		ENSG00000145708|ENST00000274368|CRHBP	ENSG00000145708|ENST00000274368|CRHBP	ENSG00000145708|ENST00000274368|CRHBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2771911621094	2	505.768917	1009.52328	0.34928	0.00017665	-0.19718	-9.9729E-05	0.15209	7.6923E-05	505.7690457241442	53.066	0.37917	53.056	52.812	53.192	-0.0096054					29	13	3	0	0	0	0.24688	1	12422	12422		14.838	14.838	1	643750			35225	4665	20685	20686	42705	42705					0.018900714145161146
QGGGGGAG	8	Unmodified	_QGGGGGAG_					0	0	0			REV__ENST00000588524.5_1_19:11687775-11688428:-|nuORF	REV__ENST00000588524.5_1_19:11687775-11688428:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.805908203125	1	560.242315	559.235038	0.39232	0.00021979	4.3456	0.0024346	4.7379	0.0026544	560.2449005249341	72.596	0.13261	72.596	72.534	72.667	0					7	4	2	0	0	0	0.34445	1	18503	18503		0	0	1	42696	+		35226	20084	20686	20687	42706	42706					-0.06220979053045994
QGGVAVPATL	10	Unmodified	_QGGVAVPATL_					0	0	0		nc|ENSG00000172508|A5YM72|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1;nc|ENSG00000172508|A5YM72-4|CARNS1;ENST00000531958.5_1_11:67184814-67192505:+|nuORF	nc|ENSG00000172508|A5YM72|CARNS1	nc|ENSG00000172508|A5YM72|CARNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7484130859375	2	456.761092	911.507631	0.051804	2.3662E-05	-0.6582	-0.00030064	-0.60639	-0.00027698	456.76066432525374	17.675	0.47128	17.675	17.396	17.867	0					19	15	2	0	0	0	0.3641	1	1649	1649		10.074	1.4806	1	29345			35227	6642	20687	20688	42707	42707					0.04833784897471105
QGGVWVQVLT	10	Unmodified	_QGGVWVQVLT_					0	0	0			REV__ENSG00000234438|ENST00000432196|KBTBD13	REV__ENSG00000234438|ENST00000432196|KBTBD13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.8169555664062	2	543.800749	1085.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.234	1	26.212	25.712	26.712	-0.022238								0	0	0	0.37807	1	4290	4290		2.9952	0.26005	1		+		35228	19141	20688	20689	42708	42708					0.04757431851612637
QGHCVRDKQKV	11	Unmodified	_QGHCVRDKQKV_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.3419189453125	2	649.34332	1296.67209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.17	1	104.17	103.67	104.67	0.0018463								0	0	0	0.37382	1	27675	27675		2.9952	0	1				35229	4941	20689	20690	42709	42709					0.03561854045733526
QGHPLDEI	8	Unmodified	_QGHPLDEI_					0	0	0			REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.7279357910156	2	454.727249	907.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.976	1	82.976	82.476	83.476	0								0	0	0	0.34492	1	21687	21687		16.942	3.4344	1		+		35230	21563	20690	20691	42710	42710					-0.01747665033337853
QGHPLDEI	8	Unmodified	_QGHPLDEI_					0	0	0			REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.72796630859375	2	454.727249	907.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.126	1	83.126	82.626	83.626	0								0	0	0	0.25356	1	21733	21733		36.044	7.5574	1		+		35231	21563	20690	20691	42711	42711					-0.01747665033337853
QGHPLDEI	8	Unmodified	_QGHPLDEI_					0	0	0			REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.7281494140625	2	454.727249	907.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.935	1	83.008	82.508	83.508	0.073097								0	0	0	0.25356	1	21666	21666		36.044	7.5574	1		+		35232	21563	20690	20691	42712	42712					-0.01747665033337853
QGHPLDEI	8	Unmodified	_QGHPLDEI_					0	0	0			REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.72796630859375	2	454.727249	907.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.081	1	83.154	82.654	83.654	0.073097								0	0	0	0.29147	1	21711	21711		30.225	1.738	1		+		35233	21563	20690	20691	42713	42713					-0.01747665033337853
QGHPLDEI	8	Unmodified	_QGHPLDEI_					0	0	0			REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.7280578613281	2	454.727249	907.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.261	1	83.334	82.834	83.834	0.073097								0	0	0	0.35466	1	21766	21766		12.532	0.89125	1		+		35234	21563	20690	20691	42714	42714					-0.01747665033337853
QGHPLDEI	8	Unmodified	_QGHPLDEI_					0	0	0			REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.72808837890625	2	454.727249	907.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.033	1	83.012	82.512	83.512	-0.020584								0	0	0	0.25356	1	21689	21689		36.044	9.1605	1		+		35235	21563	20690	20691	42715	42715					-0.01747665033337853
QGHPLDEI	8	Unmodified	_QGHPLDEI_					0	0	0			REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	REV__ENST00000487572.5_1_3:122920914-122923607:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.72808837890625	2	454.727249	907.439946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.334	1	83.314	82.814	83.814	-0.020584								0	0	0	0.34229	1	21782	21782		18.135	1.1927	1		+		35236	21563	20690	20691	42716	42716					-0.01747665033337853
QGIGLVLL	8	Unmodified	_QGIGLVLL_					0	0	0			REV__nc|ENSG00000122335|Q96JX3-2|SERAC1	REV__nc|ENSG00000122335|Q96JX3-2|SERAC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.21795654296875	2	406.765646	811.516739	-0.17206	-6.9987E-05	0.35123	0.00014287	0.17917	7.288E-05	406.7656592690649	42.613	0.68811	42.705	42.354	43.043	0.091362					34	24	3	0	0	0	0.34185	1	9341	9341		5.7604	0	1	204730	+		35237	22975	20691	20692	42717	42717					0.10344178253808423
QGKHHHNK	8	Unmodified	_QGKHHHNK_					0	0	0		ENST00000583882.5_1_17:9820322-9862588:-|nuORF;ENST00000578655.1_1_17:9846551-9939756:-|nuORF	ENST00000583882.5_1_17:9820322-9862588:-|nuORF	ENST00000583882.5_1_17:9820322-9862588:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.25897216796875	2	493.257374	984.500195	0.17839	8.7992E-05	2.4448	0.0012059	2.6232	0.0012939	493.25886563883796	16.22	0.46577	16.105	15.838	16.304	-0.11434					35	15	3	0	0	0	0.34337	1	1255	1255		5.2307	0	1	61798			35238	12063	20692	20693	42718	42718					0.007324901404103912
QGKRKTLQ	8	Unmodified	_QGKRKTLQ_					0	0	0		ENST00000485527.5_1_2:75185926-75187326:+|nuORF;ENST00000233699.8_1_2:75185926-75196546:+|nuORF;ENST00000459636.5_1_2:75185926-75188259:+|nuORF;ENSG00000115350|ENST00000483063|POLE4;ENST00000465242.5_1_2:75186200-75196546:+|nuORF	ENST00000485527.5_1_2:75185926-75187326:+|nuORF	ENST00000485527.5_1_2:75185926-75187326:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2635192871094	2	479.793258	957.571963	0.268	0.00012859	0.19092	9.1604E-05	0.45892	0.00022019	479.7931264527931	80.105	0.51448	80.079	79.806	80.32	-0.026825					21	17	2	0	0	0	0.34247	1	20798	20798		8.5933	0	1	75553			35239	2637	20693	20694	42719	42719					0.0914798477426757
QGLAWVQRR	9	Unmodified	_QGLAWVQRR_					0	0	0			REV__ENST00000268655.4_1_16:3459109-3459181:+|nuORF	REV__ENST00000268655.4_1_16:3459109-3459181:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3064575195312	2	557.317432	1112.62031	-0.028217	-1.5726E-05	-0.12129	-6.76E-05	-0.14951	-8.3326E-05	557.317357960807	15.328	1.1649	15.264	14.871	16.036	-0.064413					95	39	4	0	0	0	0.34681	1	1070	1070		1.8442	0	1	1105800	+		35240	19667	20694	20695	42720	42720					0.06850478414162353
QGLHSMNMME	10	Unmodified	_QGLHSMNMME_					0	0	0		nc|ENSG00000204217|Q13873-2|BMPR2;ENSG00000204217|ENST00000374580|BMPR2	nc|ENSG00000204217|Q13873-2|BMPR2	nc|ENSG00000204217|Q13873-2|BMPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.242431640625	2	589.243569	1176.47258	0.35541	0.00020942	-0.37577	-0.00022142	-0.020359	-1.1996E-05	589.2431851192964	98.029	0.48051	98.022	97.807	98.288	-0.0068207					91	53	2	0	0	0	0.39227	1	26217	26217		4.897	2.1618	1	346200			35241	8206	20695	20696	42721	42721					-0.10859285288665887
QGLQLLLLRQ	10	Unmodified	_QGLQLLLLRQ_					0	0	0			REV__ENST00000436966.1_1_1:226059699-226065338:-|nuORF	REV__ENST00000436966.1_1_1:226059699-226065338:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8297119140625	2	591.371872	1180.72919	0.54696	0.00032346	-0.054374	-3.2155E-05	0.49259	0.0002913	591.3718515473572	57.164	0.49787	57.164	56.937	57.435	0					28	18	2	0	0	0	0.31629	1	13835	13835		10.074	10.074	1	282180	+		35242	20301	20696	20697	42722	42722					0.14605644593802936
QGLQLLLLRQ	10	Unmodified	_QGLQLLLLRQ_					0	0	0			REV__ENST00000436966.1_1_1:226059699-226065338:-|nuORF	REV__ENST00000436966.1_1_1:226059699-226065338:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8297729492188	2	591.371872	1180.72919	0.3947	0.00023342	0.35625	0.00021068	0.75095	0.00044409	591.3720567124006	57.024	0.46214	57.103	56.935	57.397	0.078674					22	16	2	0	0	0	0.31629	1	13787	13787		10.074	0.6908	1	295010	+		35243	20301	20696	20697	42723	42723					0.14605644593802936
QGLSIPVI	8	Unmodified	_QGLSIPVI_					0	0	0		nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG;ENST00000453839.5_1_2:61014200-61024278:+|nuORF;ENST00000496283.5_1_2:61002191-61021341:+|nuORF	nc|ENSG00000115421|Q9BWT3-2|PAPOLG	nc|ENSG00000115421|Q9BWT3-2|PAPOLG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2391662597656	2	413.755278	825.496004	0.17231	7.1293E-05	-0.94993	-0.00039304	-0.77762	-0.00032174	413.7548356263959	73.594	0.69997	73.647	73.226	73.926	0.052361					39	24	2	0	0	0	0.33293	1	18826	18826		20.454	0	1	303830			35244	2645	20697	20698	42724	42724					0.07627587874128494
QGLSIPVI	8	Unmodified	_QGLSIPVI_					0	0	0		nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG;ENST00000453839.5_1_2:61014200-61024278:+|nuORF;ENST00000496283.5_1_2:61002191-61021341:+|nuORF	nc|ENSG00000115421|Q9BWT3-2|PAPOLG	nc|ENSG00000115421|Q9BWT3-2|PAPOLG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.23931884765625	2	413.755278	825.496004	0.17247	7.136E-05	-1.0068	-0.00041658	-0.83436	-0.00034522	413.75468737389673	73.691	0.56213	73.661	73.265	73.827	-0.030655					36	20	2	0	0	0	0.32099	1	18852	18852		25.399	0	1	243850			35245	2645	20697	20698	42725	42725					0.07627587874128494
QGLSVLLSL	9	Unmodified	_QGLSVLLSL_					0	0	0		ENSG00000061656|ENST00000374273|SPAG4;ENST00000468248.5_1_20:34204975-34205587:+|nuORF;ENST00000463973.5_1_20:34204963-34206398:+|nuORF	ENSG00000061656|ENST00000374273|SPAG4	ENSG00000061656|ENST00000374273|SPAG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7210693359375	2	465.286943	928.559333	-0.27742	-0.00012908	-1.1351	-0.00052817	-1.4126	-0.00065725	465.2866641108251	81.388	0.66624	81.457	80.863	81.53	0.068993					42	33	2	0	0	0	0.25779	1	21051	21051		6.2058	2.2614	1	104280			35246	759	20698	20699	42726	42726					0.092195285913931
QGMWYKQR	8	Unmodified	_QGMWYKQR_					0	0	0		ENST00000591292.5_1_16:4851717-4851876:-|nuORF	ENST00000591292.5_1_16:4851717-4851876:-|nuORF	ENST00000591292.5_1_16:4851717-4851876:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7710571289062	2	548.771468	1095.52838	0.53578	0.00029402	-1.6141	-0.00088577	-1.0783	-0.00059175	548.7705327443746	20.767	0.593	20.767	20.487	21.08	0					28	20	2	0	0	0	0.46022	1	2675	2675		2.3027	0	1	81160			35247	12179	20699	20700	42727	42727					-0.015559479945295607
QGNPKLQK	8	Unmodified	_QGNPKLQK_					0	0	0		ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.20562744140625	2	456.766709	911.518865	0.21989	0.00010044	-0.63314	-0.0002892	-0.41325	-0.00018876	456.766325411458	17.104	0.74148	17.043	16.588	17.33	-0.060429					62	26	3	0	0	0	0.34131	1	1441	1441		12.532	1.7076	1	215950			35248	6124	20700	20701	42728	42728					0.05956606991594526
QGNTVLKL	8	Unmodified	_QGNTVLKL_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.7455139160156	2	436.763635	871.512717	0.27975	0.00012219	0.17882	7.81E-05	0.45857	0.00020029	436.7637123168324	36.156	0.35024	36.243	35.982	36.333	0.08625					18	12	2	0	0	0	0.34117	1	7264	7264		13.906	0	1	171650			35249	2585	20701	20702	42729	42729					0.071820887600893
QGNTVLKL	8	Unmodified	_QGNTVLKL_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	436.763635	871.512717	0.078992	3.4501E-05	0.18327	8.0045E-05	0.26226	0.00011455	436.7636721921592	36.32	0.44675	36.32	36.065	36.511	0	0.047542	-4.3382E-06	NaN	19.257	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231990			35250	2585	20701	20702							0.071820887600893
QGNTVLKL	8	Unmodified	_QGNTVLKL_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	436.763635	871.512717	0.18816	8.2182E-05	0.19922	8.701E-05	0.38738	0.00016919	436.7636326080533	36.172	0.44887	36.254	36.062	36.511	0.082359	-0.017961	9.5931E-06	NaN	19.257	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160020			35251	2585	20701	20702							0.071820887600893
QGPFQQPNYP	10	Unmodified	_QGPFQQPNYP_					0	0	0			REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L	REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.77880859375	2	588.277638	1174.54072	-0.0050253	-2.9563E-06	-0.20076	-0.0001181	-0.20579	-0.00012106	588.2775803739934	14.318	0.72431	14.214	13.816	14.54	-0.10466					56	24	3	0	0	0	0.39935	1	628	628		3.5965	0.60125	1	203300	+		35252	13119	20702	20703	42730	42730					-0.03956633050484015
QGPIRRQRTK	10	Unmodified	_QGPIRRQRTK_					0	0	0			REV__ENST00000584574.5_3_17:61904600-61904903:-|nuORF	REV__ENST00000584574.5_3_17:61904600-61904903:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2211608886719	3	413.917938	1238.73199	0.33261	0.00013767	4.2056	0.0017408	4.5382	0.0018785	413.91973682979244	37.153	0.2213	37.153	37.063	37.285	0					10	7	2	0	0	0	0.31958	1	7596	7596		2.8433	0	1	50328	+		35253	22502	20703	20704	42731	42731					0.12216912771305033
QGQIFHVSIS	10	Unmodified	_QGQIFHVSIS_					0	0	0		ENST00000228945.8_1_12:15095121-15095250:-|nuORF	ENST00000228945.8_1_12:15095121-15095250:-|nuORF	ENST00000228945.8_1_12:15095121-15095250:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2957153320312	2	558.29583	1114.57711	0.40828	0.00022794	0.039797	2.2219E-05	0.44808	0.00025016	558.2957573705629	36.289	1.4279	36.289	35.635	37.063	0					113	51	3	0	0	0	0.1715	1	7305	7305		36.127	3.8215	1	1597100			35254	8854	20704	20705	42732	42732					0.024402438462402642
QGQIFHVSIS	10	Unmodified	_QGQIFHVSIS_					0	0	0		ENST00000228945.8_1_12:15095121-15095250:-|nuORF	ENST00000228945.8_1_12:15095121-15095250:-|nuORF	ENST00000228945.8_1_12:15095121-15095250:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2960815429688	2	558.29583	1114.57711	0.4832	0.00026977	-0.0029377	-1.6401E-06	0.48026	0.00026813	558.2956895570992	36.157	1.1844	36.239	35.651	36.836	0.082355					98	42	3	0	0	0	0.1715	2	7303	7256;7303		36.127	3.6823	1	1329300			35255	8854	20704	20705	42733;42734	42734					0.024402438462402642
QGQIFHVSIS	10	Unmodified	_QGQIFHVSIS_					0	0	0		ENST00000228945.8_1_12:15095121-15095250:-|nuORF	ENST00000228945.8_1_12:15095121-15095250:-|nuORF	ENST00000228945.8_1_12:15095121-15095250:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2959594726562	2	558.29583	1114.57711	0.52851	0.00029506	0.030142	1.6828E-05	0.55865	0.00031189	558.2957387627167	36.134	1.2188	36.22	35.62	36.839	0.086246					108	43	4	0	0	0	0.11922	1	7252	7252		43.858	11.553	1	1680500			35256	8854	20704	20705	42735	42735					0.024402438462402642
QGQLLWNKE	9	Unmodified	_QGQLLWNKE_					0	0	0			REV__nc|ENSG00000163808|Q9NS87-2|KIF15	REV__nc|ENSG00000163808|Q9NS87-2|KIF15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.29638671875	2	558.29583	1114.57711	0.52851	0.00029506	0.030142	1.6828E-05	0.55865	0.00031189	558.2957387627167	36.134	1.2188	36.22	35.62	36.839	0.086246					108	43	4	0	0	0	0.088391	1	7303	7303		39.957	0	1	1680500	+		35257	17089	20705	20706	42736	42736					0.024402438462402642
QGQLQRIVF	9	Unmodified	_QGQLQRIVF_					0	0	0		ENST00000562619.1_1_15:42986519-43010984:+|nuORF	ENST00000562619.1_1_15:42986519-43010984:+|nuORF	ENST00000562619.1_1_15:42986519-43010984:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7413330078125	2	544.81419	1087.61383	0.367	0.00019995	0.92546	0.0005042	1.2925	0.00070415	544.8142312634794	27.43	0.51119	27.409	27.13	27.641	-0.021412					34	17	3	0	0	0	0.24311	1	4632	4632		16.942	4.7016	1	219390			35258	11925	20706	20707	42737	42737					0.07352540462784418
QGQVMIAL	8	Unmodified	_QGQVMIAL_					0	0	0			REV__ENSG00000167972|ENST00000301732|ABCA3	REV__ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.5485534667969	2	430.238938	858.463324	-0.25003	-0.00010757	-0.18378	-7.9069E-05	-0.43381	-0.00018664	430.2388660165446	17.165	0.80632	17.047	16.635	17.441	-0.11739					58	28	3	0	0	0	0.33995	1	1505	1505		5.7604	3.4577	1	886630	+		35259	17425	20707	20708	42738	42738					0.02843057479617528
QGRALRLAA	9	Unmodified	_QGRALRLAA_					0	0	0		ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.263916015625	2	478.293425	954.572297	-0.18552	-8.8735E-05	-0.58851	-0.00028148	-0.77403	-0.00037021	478.29266376077567	12.222	0.17481	12.154	12.051	12.226	-0.068059					16	7	3	0	0	0	0.35914	1	33	33		0	0	1	58852			35260	2264	20708	20709	42739	42739					0.09319404494101491
QGRNVENLV	9	Unmodified	_QGRNVENLV_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21867883-21868626:-|nuORF	nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7777709960938	2	514.777805	1027.54106	0.14833	7.6355E-05	0.86516	0.00044536	1.0135	0.00052172	514.7782069629285	17.499	0.9048	17.438	17.18	18.084	-0.060429					58	31	3	0	0	0	0.25989	1	1683	1683		14.838	1.2234	1	235610			35261	455	20709	20710	42740	42740					0.028387866693719843
QGRRNGKP	8	Unmodified	_QGRRNGKP_					0	0	0			REV__nc|ENSG00000185278|Q5TC79-3|ZBTB37	REV__nc|ENSG00000185278|Q5TC79-3|ZBTB37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7484436035156	2	456.759749	911.504946	0.046693	2.1328E-05	1.4142	0.00064595	1.4609	0.00066728	456.7606411207657	17.74	0.45273	17.679	17.472	17.925	-0.060429					25	15	2	0	0	0	0.45169	1	1718	1718		5.2307	0	1	14652	+		35262	18369	20710	20711	42741	42741					0.04565374283174606
QGSDQRVQNF	10	Unmodified	_QGSDQRVQNF_					0	0	0		ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5	ENSG00000154451|ENST00000370459|GBP5	ENSG00000154451|ENST00000370459|GBP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.7647705078125	2	589.781076	1177.5476	0.2514	0.00014827	-1.2896	-0.00076056	-1.0382	-0.00061229	589.7803100320085	75.425	0.7256	75.425	75.206	75.932	0					62	25	3	0	0	0	0.36786	1	19419	19419		9.3831	9.3831	1	365220			35263	5130	20711	20712	42742	42742					-0.03407320169912964
QGSEPPKDK	9	Unmodified	_QGSEPPKDK_					0	0	0		ENSG00000136928|ENST00000259455|GABBR2	ENSG00000136928|ENST00000259455|GABBR2	ENSG00000136928|ENST00000259455|GABBR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2587890625	2	493.251089	984.487624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.056	1	16.056	15.556	16.556	0								0	0	0	0.2489	1	1212	1212		6.7232	0	1				35264	4012	20712	20713	42743	42743					-0.005240108331463489
QGSFDLYFIL	10	Unmodified	_QGSFDLYFIL_					0	0	0		ENSG00000274209|ENST00000620264|ANTXRL	ENSG00000274209|ENST00000620264|ANTXRL	ENSG00000274209|ENST00000620264|ANTXRL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8081665039062	2	601.808239	1201.60193	0.61854	0.00037224	-0.52405	-0.00031538	0.094496	5.6868E-05	601.8080491298982	74.485	1.4116	74.485	73.632	75.043	0					93	48	3	0	0	0	0.2811	1	18981	18981		22.736	0	1	772990			35265	8712	20713	20714	42744	42744					0.009188789289510169
QGSFDLYFIL	10	Unmodified	_QGSFDLYFIL_					0	0	0		ENSG00000274209|ENST00000620264|ANTXRL	ENSG00000274209|ENST00000620264|ANTXRL	ENSG00000274209|ENST00000620264|ANTXRL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.8087158203125	2	601.808239	1201.60193	0.4712	0.00028357	-0.35532	-0.00021383	0.11589	6.9741E-05	601.8081501541831	74.314	1.6664	74.367	73.578	75.244	0.052361					113	58	3	0	0	0	0.22916	2	18920	18920;18969		29.082	0	1	909440			35266	8712	20713	20714	42745;42746	42745					0.009188789289510169
QGSFDLYFIL	10	Unmodified	_QGSFDLYFIL_					0	0	0		ENSG00000274209|ENST00000620264|ANTXRL	ENSG00000274209|ENST00000620264|ANTXRL	ENSG00000274209|ENST00000620264|ANTXRL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.8082885742188	2	601.808239	1201.60193	0.48202	0.00029008	-0.36562	-0.00022003	0.1164	7.0052E-05	601.8081647331855	74.292	1.7331	74.261	73.61	75.343	-0.030655					119	62	3	0	0	0	0.22916	2	19012	18957;19012		29.082	0	1	839680			35267	8712	20713	20714	42747;42748	42748					0.009188789289510169
QGSFDLYFIL	10	Unmodified	_QGSFDLYFIL_					0	0	0		ENSG00000274209|ENST00000620264|ANTXRL	ENSG00000274209|ENST00000620264|ANTXRL	ENSG00000274209|ENST00000620264|ANTXRL	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	601.808239	1201.60193	0.61854	0.00037224	-0.52405	-0.00031538	0.094496	5.6868E-05	601.8080491298982	74.485	1.4116	74.485	73.632	75.043	0	0.11433	-0.00012359	NaN	29.082	93	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	772990			35268	8712	20713	20714							0.009188789289510169
QGSFDLYFIL	10	Unmodified	_QGSFDLYFIL_					0	0	0		ENSG00000274209|ENST00000620264|ANTXRL	ENSG00000274209|ENST00000620264|ANTXRL	ENSG00000274209|ENST00000620264|ANTXRL	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	601.808239	1201.60193	0.48202	0.00029008	-0.36562	-0.00022003	0.1164	7.0052E-05	601.8081647331855	74.292	1.7331	74.261	73.61	75.343	-0.030655	-0.10988	6.7097E-05	NaN	29.082	119	62	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	839680			35269	8712	20713	20714							0.009188789289510169
QGSSRLCAYR	10	Unmodified	_QGSSRLCAYR_					0	0	0			REV__ENST00000544344.5_1_12:6898743-6923486:+|nuORF	REV__ENST00000544344.5_1_12:6898743-6923486:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.78369140625	2	570.782564	1139.55058	-0.00052272	-2.9836E-07	1.1282	0.00064396	1.1277	0.00064366	570.7834648076803	28.456	0.8637	28.456	27.981	28.845	0					55	29	3	0	0	0	0.37133	1	4954	4954		8.7454	0	1	296820	+		35270	21017	20714	20715	42749	42749					-0.013617683167467476
QGTKIRTTAS	10	Unmodified	_QGTKIRTTAS_					0	0	0		nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8170776367188	2	531.798737	1061.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.093	1	77.061	76.561	77.561	-0.031334								0	0	0	0.35611	1	19868	19868		12.241	0	1				35271	12950	20715	20716	42750	42750					0.05459342357880814
QGTNCKNF	8	Unmodified	_QGTNCKNF_					0	0	0			REV__ENSG00000186230|ENST00000334181|ZNF749	REV__ENSG00000186230|ENST00000334181|ZNF749	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.20562744140625	2	456.205627	910.396701	0.19098	8.7127E-05	-0.29488	-0.00013453	-0.1039	-4.74E-05	456.2054485449628	16.944	0.88254	16.882	16.414	17.297	-0.061686					68	31	3	0	0	0	0.4419	1	1441	1441		8.5933	0	1	146510	+		35272	18438	20716	20717	42751	42751					-0.062081780822722976
QGTRGRQGAGG	11	Unmodified	_QGTRGRQGAGG_					0	0	0			REV__ENSG00000164236|ENST00000296657|ANKRD33B	REV__ENSG00000164236|ENST00000296657|ANKRD33B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7700805664062	2	522.768303	1043.52205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.641	1	17.641	17.141	18.141	0								0	0	0	0.38137	1	1691	1691		1.0715	0.27783	1		+		35273	17140	20717	20718	42752	42752					0.002032500983432328
QGVTPPTI	8	Unmodified	_QGVTPPTI_					0	0	0			REV__nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1	REV__nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.17938232421875	2	406.729261	811.443968	-0.11812	-4.8043E-05	0.32401	0.00013178	0.20589	8.374E-05	406.72931216251806	35.413	0.68624	35.488	35.234	35.921	0.075306					30	24	2	0	0	0	0.34247	1	7167	7167		8.5933	0	1	196240	+		35274	15871	20718	20719	42753	42753					0.030704244603612096
QGVWIVVEGQI	11	Unmodified	_QGVWIVVEGQI_					0	0	0			REV__ENST00000228928.11_1_12:113409775-113410174:+|nuORF	REV__ENST00000228928.11_1_12:113409775-113410174:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2423400878906	3	409.895917	1226.66592	-0.33465	-0.00013717	-2.3813	-0.00097608	-2.7159	-0.0011132	409.8951589008678	15.333	0.42528	15.333	15.072	15.498	0					26	14	2	0	0	0	0.33122	1	969	969		7.0371	1.1689	1	74916	+		35275	19455	20719	20720	42754	42754					0.061656590859229254
QGWEEQTFT	9	Unmodified	_QGWEEQTFT_					0	0	0			REV__ENSG00000178229|ENST00000321545|ZNF543	REV__ENSG00000178229|ENST00000321545|ZNF543	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8212890625	2	563.246003	1124.47745	0.35982	0.00020267	-0.99559	-0.00056076	-0.63577	-0.0003581	563.2453846948591	76.874	0.44906	76.874	76.668	77.117	0					27	16	2	0	0	0	0.25431	1	19781	19781		9.3831	0.63772	1	145710	+		35276	18024	20720	20721	42755	42755					-0.07980618558372043
QGYYKPVLNSL	11	Unmodified	_QGYYKPVLNSL_					0	0	0			REV__nc|ENSG00000196562|Q8IWU5-2|SULF2	REV__nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.84588623046875	3	427.899439	1280.67649	-0.23664	-0.00010126	1.5911	0.00068083	1.3545	0.00057957	427.89841984525185	40.93	0.78085	41.026	40.589	41.37	0.096622					85	28	5	0	0	0	0.3299	1	8824	8824		9.7643	2.2872	1	689260	+		35277	18662	20721	20722	42756	42756					0.047376417403484083
QHAILDSLFTE	11	Unmodified	_QHAILDSLFTE_					0	0	0			REV__nc|ENSG00000117595|O14896-2|IRF6	REV__nc|ENSG00000117595|O14896-2|IRF6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.3215942382812	2	637.324785	1272.63502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.75	1	102.75	102.25	103.25	-0.0033646								0	0	0	0.38126	1	27354	27354		1.1933	0	1		+		35278	14979	20722	20723	42757	42757					0.009604609809684916
QHCRFQKCL	9	Unmodified	_QHCRFQKCL_					0	0	0		RORA|p.L130F|1|0.4|ENSG00000069667|chr15:60514650-60514650|T/A|missense_variant	RORA|p.L130F|1|0.4|ENSG00000069667|chr15:60514650-60514650|T/A|missense_variant	RORA|p.L130F|1|0.4|ENSG00000069667|chr15:60514650-60514650|T/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.3370361328125	2	581.784053	1161.55355	0.099277	5.7758E-05	-0.41845	-0.00024345	-0.31917	-0.00018569	581.7838894272749	22.476	0.63366	22.431	22.156	22.789	-0.044867					39	21	2	0	0	0	0.26145	1	3123	3123		2.0598	0.73022	1	141650			35279	23371	20723	20724	42758	42758					-0.02076216463592573
QHDFGHLSVF	10	Unmodified	_QHDFGHLSVF_					0	0	0		nc|ENSG00000149485|O60427-2|FADS1;nc|ENSG00000149485|O60427|FADS1;ENSG00000149485|ENST00000350997|FADS1;ENST00000496123.6_1_11:61571226-61578532:-|nuORF	nc|ENSG00000149485|O60427-2|FADS1	nc|ENSG00000149485|O60427-2|FADS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.7852172851562	2	593.78563	1185.55671	0.43112	0.00025599	-0.39962	-0.00023729	0.0315	1.8704E-05	593.785241463846	82.179	2.4243	82.248	81.44	83.865	0.068993					179	99	2	0	0	0	0.40106	1	21714	21714		3.2813	1.2216	1	804010			35280	4870	20724	20725	42759	42759					-0.02864926813595048
QHIGNIFMF	9	Oxidation (M)	_QHIGNIFM(Oxidation (M))F_		QHIGNIFM(1)F		QHIGNIFM(82)F	0	0	1		TMX2|p.D143Efs*8|1|0.34|ENSG00000213593|chr11:57738418-57738418|T/-|frameshift_variant;ENSG00000213593|ENST00000278422|TMX2	TMX2|p.D143Efs*8|1|0.34|ENSG00000213593|chr11:57738418-57738418|T/-|frameshift_variant	TMX2|p.D143Efs*8|1|0.34|ENSG00000213593|chr11:57738418-57738418|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7739868164062	2	561.773677	1121.5328	0.4418	0.00024819	-0.63127	-0.00035463	-0.18947	-0.00010644	561.7737834528469	63.651	1.4752	63.642	63.217	64.692	-0.0085526					115	51	5	0	0	0	0.0085732	1	15790	15790		81.613	62.174	1	1403100			35281	8354	20725	20726	42760	42760		900			-0.02310483571613986
QHIGNIFMF	9	Oxidation (M)	_QHIGNIFM(Oxidation (M))F_					0	0	1		TMX2|p.D143Efs*8|1|0.34|ENSG00000213593|chr11:57738418-57738418|T/-|frameshift_variant;ENSG00000213593|ENST00000278422|TMX2	TMX2|p.D143Efs*8|1|0.34|ENSG00000213593|chr11:57738418-57738418|T/-|frameshift_variant	TMX2|p.D143Efs*8|1|0.34|ENSG00000213593|chr11:57738418-57738418|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.773677	1121.5328	0.4832	0.00027145	-0.56236	-0.00031592	-0.079159	-4.447E-05	561.7736562070988	63.45	1.1931	63.545	63.2	64.393	0.095722	-0.052722	-9.0874E-05	NaN	81.613	96	40	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1350400			35282	8354	20725	20726				900			-0.02310483571613986
QHLHSLFWA	9	Unmodified	_QHLHSLFWA_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3041381835938	2	569.793258	1137.57196	0.51102	0.00029118	1.983	0.0011299	2.494	0.0014211	569.793847971005	20.281	0.30534	20.171	19.933	20.238	-0.11003					16	10	2	0	0	0	0.25988	1	2426	2426		3.9444	0.3479	1	84646	+		35283	18808	20726	20727	42761	42761					0.008679847742996571
QHLTELREPAP	11	Unmodified	_QHLTELREPAP_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8882751464844	3	430.89821	1289.6728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.589	1	22.589	22.089	23.089	0								0	0	0	0.36872	1	3191	3191		4.1166	2.2103	1				35284	2375	20727	20728	42762	42762					0.03954971966481935
QHMLQEKVVQ	10	Unmodified	_QHMLQEKVVQ_					0	0	0			REV__nc|ENSG00000138336|Q8NFU7-2|TET1	REV__nc|ENSG00000138336|Q8NFU7-2|TET1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3276977539062	2	620.329347	1238.64414	-0.13396	-8.3098E-05	1.1448	0.00071017	1.0109	0.00062707	620.3278784438116	100.14	0.5668	100.14	99.983	100.55	0					110	74	2	0	0	0	0.39935	1	26802	26802		3.5965	0	1	97270	+		35285	15918	20728	20729	42763	42763					0.03436531065699455
QHPMFPSSLL	10	Unmodified	_QHPMFPSSLL_					0	0	0			REV__ENST00000396987.7_1_8:41479703-41480342:+|nuORF	REV__ENST00000396987.7_1_8:41479703-41480342:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7796020507812	2	578.794609	1155.57467	0.50304	0.00029116	-1.2765	-0.00073882	-0.77345	-0.00044767	578.7936632759784	65.972	0.68252	65.972	65.686	66.369	0					46	24	3	0	0	0	0.36786	1	16471	16471		9.3831	0.63772	1	244170	+		35286	20664	20729	20730	42764	42764					0.003100721169175813
QHQDFDTSF	9	Unmodified	_QHQDFDTSF_					0	0	0			REV__ENSG00000083814|ENST00000317398|ZNF671	REV__ENSG00000083814|ENST00000317398|ZNF671	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.7367553710938	2	562.735803	1123.45705	-0.0091813	-5.1667E-06	0.9212	0.00051839	0.91202	0.00051323	562.7364263858706	75.823	0.77473	75.823	75.477	76.252	0					124	27	7	0	0	0	0.23007	1	19474	19474		19.257	5.7491	1	2964000	+		35287	13939	20730	20731	42765	42765					-0.09973789218202
QHQDFDTSF	9	Unmodified	_QHQDFDTSF_					0	0	0			REV__ENSG00000083814|ENST00000317398|ZNF671	REV__ENSG00000083814|ENST00000317398|ZNF671	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.7363891601562	2	562.735803	1123.45705	0.31392	0.00017665	1.0232	0.0005758	1.3371	0.00075245	562.7362310656696	75.758	1.1835	75.811	75.188	76.371	0.053017					107	32	5	0	0	0	0.31763	1	19546	19546		6.2058	0.9089	1	2401700	+		35288	13939	20730	20731	42766	42766					-0.09973789218202
QHQDFDTSF	9	Unmodified	_QHQDFDTSF_					0	0	0			REV__ENSG00000083814|ENST00000317398|ZNF671	REV__ENSG00000083814|ENST00000317398|ZNF671	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.7371215820312	2	562.735803	1123.45705	0.25676	0.00014449	0.7207	0.00040556	0.97746	0.00055005	562.736242159589	75.863	0.69369	75.832	75.496	76.189	-0.031487					112	24	6	0	0	0	0.31417	1	19459	19459		6.7232	0	1	3176400	+		35289	13939	20730	20731	42767	42767					-0.09973789218202
QHRLGLGV	8	Unmodified	_QHRLGLGV_					0	0	0		nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-3|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENSG00000102312|ENST00000326194|PORCN	nc|ENSG00000102312|Q9H237-5|PORCN	nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.5155944824219	2	440.261594	878.508634	0.0067039	2.9515E-06	-0.10575	-4.6557E-05	-0.099046	-4.3606E-05	440.2615042917731	31.047	0.36393	31.047	30.838	31.202	0					16	12	2	0	0	0	0.34337	1	5779	5779		5.2307	2.6532	1	71681			35290	1761	20731	20732	42768	42768					0.06452044057050443
QHRLGLGV	8	Unmodified	_QHRLGLGV_					0	0	0		nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-3|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENSG00000102312|ENST00000326194|PORCN	nc|ENSG00000102312|Q9H237-5|PORCN	nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	440.261594	878.508634	0.020562	9.0526E-06	-0.58242	-0.00025642	-0.56186	-0.00024737	440.2613128426193	30.93	0.40783	30.957	30.784	31.192	0.027157	-0.044878	-0.00016321	NaN	5.2307	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70285			35291	1761	20731	20732							0.06452044057050443
QHRMRQNLT	9	Unmodified	_QHRMRQNLT_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.280029296875	2	592.309281	1182.60401	0.34864	0.00020651	-0.90707	-0.00053726	-0.55842	-0.00033076	592.8102995322804	53.501	0.38738	53.557	53.379	53.766	0.056259					24	14	3	0	0	0	0.2322	1	12680	12680		20.454	1.0917	1	453680			35292	7783	20732	20733	42769	42769					0.020010291857715856
QHSLLVQFRNL	11	Unmodified	_QHSLLVQFRNL_					0	0	0		ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.743896484375	3	452.257849	1353.75172	-0.10158	-4.594E-05	0.52894	0.00023922	0.42736	0.00019328	452.2581280080452	27.669	0.80053	27.669	27.441	28.241	0					77	27	4	0	0	0	0.33277	1	4836	4836		3.0723	1.7426	1	538150			35293	2522	20733	20734	42770	42770					0.08899243991436379
QHSMILEQI	9	Unmodified	_QHSMILEQI_					0	0	0		ENSG00000138641|ENST00000402738|HERC3;ENST00000470815.1_1_4:89579601-89591046:+|nuORF	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7770385742188	2	549.784241	1097.55393	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.528	1	74.528	74.028	75.028	0								0	0	0	0.15265	1	19103	19103		34.102	1.3168	1				35294	4171	20734	20735	42771	42771					0.009054817372543766
QHTEDDADF	9	Unmodified	_QHTEDDADF_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;ENST00000518034.5_1_8:117671049-117768048:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7852172851562	2	539.209618	1076.40468	0.57635	0.00031077	1.4032	0.00075661	1.9795	0.0010674	539.2102658317456	56.857	0.58591	56.857	56.555	57.141	0					32	21	2	0	0	0	0.25526	1	13637	13637		7.9102	0.62092	1	208520			35295	4780	20735	20736	42772	42772					-0.13046372351823265
QHTEDDADF	9	Unmodified	_QHTEDDADF_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;ENST00000518034.5_1_8:117671049-117768048:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	539.209618	1076.40468	0.85604	0.00046159	1.5982	0.00086175	2.4542	0.0013233	539.2104315052088	56.824	0.63438	56.805	56.592	57.227	-0.019077	-0.031784	0.00019319	NaN	7.9102	26	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223200			35296	4780	20735	20736							-0.13046372351823265
QHTEELEEAK	10	Unmodified	_QHTEELEEAK_					0	0	0		MYH2|p.R1388H|1|0.35|ENSG00000125414|chr17:10526623-10526623|C/T|missense_variant	MYH2|p.R1388H|1|0.35|ENSG00000125414|chr17:10526623-10526623|C/T|missense_variant	MYH2|p.R1388H|1|0.35|ENSG00000125414|chr17:10526623-10526623|C/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.541015625	3	405.194692	1212.56225	-0.16436	-6.6598E-05	3.9594	0.0016043	3.7951	0.0015377	405.19631128797096	21.854	0.36827	21.804	21.604	21.972	-0.049377					18	13	2	0	0	0	0.38515	1	2992	2992		3.3196	0.82116	1	39027			35297	12549	20736	20737	42773	42773					-0.03553292812443942
QHTLSQNF	8	Unmodified	_QHTLSQNF_					0	0	0		ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7379455566406	2	487.738148	973.461744	0.11738	5.7252E-05	0.018488	9.0175E-06	0.13587	6.627E-05	487.7381135000963	25.738	0.79665	25.738	25.445	26.242	0					47	27	2	0	0	0	0.39068	1	4224	4224		20.454	2.3073	1	325620			35298	6934	20737	20738	42774	42774					-0.026048602847595248
QHVGLSRTVR	10	Unmodified	_QHVGLSRTVR_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8038940429688	2	576.833446	1151.65234	-0.12417	-7.1627E-05	2.1427	0.001236	2.0185	0.0011643	576.8347035711921	18.642	0.24906	18.584	18.458	18.707	-0.058174					10	8	2	0	0	0	0.32132	1	2014	2014		1.4819	0.8804	1	36665			35299	2894	20738	20739	42775	42775					0.08257846097330912
QHVNLVSKTTF	11	Unmodified	_QHVNLVSKTTF_					0	0	0			REV__ENSG00000142556|ENST00000270649|ZNF614	REV__ENSG00000142556|ENST00000270649|ZNF614	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.3489379882812	2	637.348594	1272.68264	0.75403	0.00048058	-0.06516	-4.153E-05	0.68887	0.00043905	637.3485168952152	50.796	0.53645	50.796	50.518	51.055	0					40	19	3	0	0	0	0.24435	1	11816	11816		27.223	8.8501	1	439320	+		35300	16126	20739	20740	42776	42776					0.05720159971838257
QHVNLVSKTTF	11	Unmodified	_QHVNLVSKTTF_					0	0	0			REV__ENSG00000142556|ENST00000270649|ZNF614	REV__ENSG00000142556|ENST00000270649|ZNF614	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	637.348594	1272.68264	0.75403	0.00048058	-0.06516	-4.153E-05	0.68887	0.00043905	637.3485168952152	50.796	0.53645	50.796	50.518	51.055	0	-0.047191	0.00018279	NaN	27.223	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	439320	+		35301	16126	20739	20740							0.05720159971838257
QHVNLVSKTTF	11	Unmodified	_QHVNLVSKTTF_					0	0	0			REV__ENSG00000142556|ENST00000270649|ZNF614	REV__ENSG00000142556|ENST00000270649|ZNF614	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	637.348594	1272.68264	0.88411	0.00056349	-0.24385	-0.00015542	0.64026	0.00040807	637.3483377271126	50.821	0.51321	50.868	50.551	51.064	0.046577	0.025024	-4.4985E-05	NaN	27.223	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	426110	+		35302	16126	20739	20740							0.05720159971838257
QHVNLVSKTTF	11	Unmodified	_QHVNLVSKTTF_					0	0	0			REV__ENSG00000142556|ENST00000270649|ZNF614	REV__ENSG00000142556|ENST00000270649|ZNF614	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	637.348594	1272.68264	0.99029	0.00063116	-0.37526	-0.00023917	0.61503	0.00039199	637.34837286508	50.855	0.4978	50.865	50.621	51.119	0.0095634	0.022167	-0.00021249	NaN	27.223	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406550	+		35303	16126	20739	20740							0.05720159971838257
QHVSMEFLKL	10	Unmodified	_QHVSMEFLKL_					0	0	0		nc|ENSG00000185880|Q86WT6-2|TRIM69;ENSG00000185880|ENST00000329464|TRIM69	nc|ENSG00000185880|Q86WT6-2|TRIM69	nc|ENSG00000185880|Q86WT6-2|TRIM69	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2011413574219	3	411.221636	1230.64308	0.34222	0.00014073	-3.632	-0.0014936	-3.2898	-0.0013528	411.55521320814313	83.645	0.33124	83.722	83.594	83.925	0.077095					18	13	2	0	0	0	0.32082	1	21881	21881		3.3196	1.4133	1	46369			35304	7563	20740	20741	42777	42777					0.03698316696772963
QHWRIQPF	8	Unmodified	_QHWRIQPF_					0	0	0			REV__nc|ENSG00000110013|Q9HAT2-2|SIAE	REV__nc|ENSG00000110013|Q9HAT2-2|SIAE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2824096679688	2	556.293425	1110.5723	0.29358	0.00016332	-0.86694	-0.00048227	-0.57336	-0.00031896	556.2939530130842	39.329	0.74047	39.429	39.128	39.868	0.099403					68	26	4	0	0	0	0.2705	1	8311	8311		34.187	3.5508	1	1032900	+		35305	14658	20741	20742	42778	42778					0.021434044941315733
QHYLLYVW	8	Unmodified	_QHYLLYVW_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.80908203125	2	561.292559	1120.57057	0.15671	8.796E-05	-1.0198	-0.00057238	-0.86305	-0.00048442	561.2922861482926	26.33	0.42198	26.33	26.106	26.528	0					28	14	3	0	0	0	0.34353	1	4292	4292		4.756	0.42677	1	111970			35306	3336	20742	20743	42779	42779					0.01510350685521189
QHYLLYVW	8	Unmodified	_QHYLLYVW_					0	0	0		ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	ENSG00000127831|ENST00000248444|VIL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.292559	1120.57057	0.22558	0.00012661	0.2076	0.00011652	0.43317	0.00024314	561.2925834909918	26.357	0.39228	26.319	26.126	26.519	-0.038671	-0.035	0.00043783	NaN	4.756	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98253			35307	3336	20742	20743							0.01510350685521189
QHYNKYFTG	9	Unmodified	_QHYNKYFTG_					0	0	0		ENST00000281129.7_2_14:81380693-81382835:-|nuORF	ENST00000281129.7_2_14:81380693-81382835:-|nuORF	ENST00000281129.7_2_14:81380693-81382835:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.2579345703125	2	579.272355	1156.53016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.969	1	60.969	60.469	61.469	0								0	0	0	0.23367	1	14946	14946		11.64	0	1				35308	9119	20743	20744	42780	42780					-0.04184615704934913
QICEFYSRAK	10	Unmodified	_QICEFYSRAK_					0	0	0		ENST00000470105.1_1_9:116790870-116812444:+|nuORF;nc|ENSG00000157657|Q5T7W0-2|ZNF618;nc|ENSG00000157657|Q5T7W0-4|ZNF618;ENSG00000157657|ENST00000374126|ZNF618	ENST00000470105.1_1_9:116790870-116812444:+|nuORF	ENST00000470105.1_1_9:116790870-116812444:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.58209228515625	3	415.541257	1243.60194	0.08442	3.508E-05	-2.8044	-0.0011653	-2.7199	-0.0011303	415.54030129991156	23.235	0.41574	23.147	22.909	23.325	-0.087608					22	14	2	0	0	0	0.31651	1	3424	3424		11.518	3.0736	1	44713			35309	5320	20744	20745	42781	42781					-0.010114443427255537
QIDPTLRK	8	Unmodified	_QIDPTLRK_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2610778808594	2	485.787641	969.56073	0.088359	4.2924E-05	-1.0625	-0.00051615	-0.97414	-0.00047322	485.7871332717896	29.567	0.3548	29.581	29.359	29.714	0.013474					19	11	2	0	0	0	0.31934	1	5321	5321		24.674	5.2349	1	71188			35310	2426	20745	20746	42782	42782					0.07473162680150836
QIDQLMWRVPR	11	Unmodified	_QIDQLMWRVPR_					0	0	0			REV__ENST00000531101.5_1_11:4621508-4624512:-|nuORF	REV__ENST00000531101.5_1_11:4621508-4624512:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2836608886719	3	481.262606	1440.76599	0.21994	0.00010585	0.28583	0.00013756	0.50577	0.00024341	481.5972522242248	92.594	0.17996	92.683	92.608	92.788	0.089203					15	11	2	0	0	0	0.3333	1	24648	24648		1.3296	0.11481	1	64712	+		35311	17378	20746	20747	42783	42783					0.06323573148029027
QIDQLMWRVPR	11	Unmodified	_QIDQLMWRVPR_					0	0	0			REV__ENST00000531101.5_1_11:4621508-4624512:-|nuORF	REV__ENST00000531101.5_1_11:4621508-4624512:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	481.262606	1440.76599	0.42852	0.00020623	0.75597	0.00036382	1.1845	0.00057005	481.26323103307703	92.402	0.071297	92.402	92.361	92.433	0.00046539	-0.14061	0.00042592	NaN	1.3296	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104210	+		35312	17378	20746	20747							0.06323573148029027
QIDSPLNGK	9	Unmodified	_QIDSPLNGK_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2613525390625	2	486.261456	970.50836	0.44609	0.00021692	-1.3661	-0.0006643	-0.92005	-0.00044738	486.26065732866266	29.482	1.0529	29.482	29.035	30.088	0					98	37	4	0	0	0	1.2283E-05	2	5236	5236;5280		155.03	66.88	1	1268100			35313	5601	20747	20748	42784;42785	42784					0.02192579546522211
QIDSPLNGK	9	Unmodified	_QIDSPLNGK_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2611999511719	2	486.261456	970.50836	0.28667	0.0001394	-1.2174	-0.00059199	-0.93075	-0.00045259	486.26076524784474	29.365	1.1154	29.377	28.944	30.06	0.012266					96	38	4	0	0	0	0.00070271	1	5228	5228		126.57	59.222	1	1485000			35314	5601	20747	20748	42786	42786					0.02192579546522211
QIDSPLNGK	9	Unmodified	_QIDSPLNGK_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2604675292969	2	486.261456	970.50836	0.1118	5.4366E-05	-1.001	-0.00048673	-0.88916	-0.00043237	486.2608608869231	29.436	1.0605	29.45	29.009	30.069	0.013474					99	36	4	0	0	0	0.00045155	2	5275	5231;5275		129.77	60.667	1	1430900			35315	5601	20747	20748	42787;42788	42788					0.02192579546522211
QIDSPLSGK	9	Unmodified	_QIDSPLSGK_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-3|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.75604248046875	2	472.756007	943.497461	0.13017	6.154E-05	-0.059502	-2.813E-05	0.070671	3.341E-05	472.7559521395651	30.599	1.2991	30.599	30.034	31.333	0					130	46	5	0	0	0	0.0011116	4	5601	5554;5601;5648;5699		121.35	44.521	1	3347100			35316	5601	20748	20749	42789;42790;42791;42792	42790					0.023451771722420744
QIDSPLSGK	9	Unmodified	_QIDSPLSGK_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-3|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7560119628906	2	472.756007	943.497461	0.21195	0.0001002	-0.083797	-3.9616E-05	0.12816	6.0587E-05	472.7559249761994	30.595	1.2814	30.623	30.103	31.385	0.027948					130	45	5	0	0	0	0.0011116	4	5601	5552;5601;5646;5694		121.35	44.521	1	3539300			35317	5601	20748	20749	42793;42794;42795;42796	42794					0.023451771722420744
QIDSPLSGK	9	Unmodified	_QIDSPLSGK_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-3|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7560119628906	2	472.756007	943.497461	0.00052265	2.4709E-07	0.083915	3.9671E-05	0.084438	3.9919E-05	472.75602135931786	30.555	1.2958	30.582	30.109	31.405	0.027157					116	46	4	0	0	0	0.00024732	4	5584	5533;5584;5635;5687		132.38	55.555	1	3490600			35318	5601	20748	20749	42797;42798;42799;42800	42798					0.023451771722420744
QIEELRQECHL	11	Unmodified	_QIEELRQECHL_					0	0	0		ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C	ENSG00000275793|ENST00000619918|RIMBP3	ENSG00000275793|ENST00000619918|RIMBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2537841796875	3	466.566243	1396.6769	-0.3483	-0.00016251	1.5739	0.00073431	1.2256	0.00057181	466.567089270562	12.376	0.2247	12.376	12.273	12.498	0					12	6	3	0	0	0	0.33348	1	101	101		0.40827	0	1	33046			35319	7352	20749	20750	42801	42801					-0.005573066021042905
QIEKESFLI	9	Unmodified	_QIEKESFLI_					0	0	0			REV__ENSG00000086619|ENST00000354619|ERO1B	REV__ENSG00000086619|ENST00000354619|ERO1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8301391601562	2	553.808239	1105.60193	0.6616	0.0003664	2.6432	0.0014638	3.3048	0.0018302	553.8105417708083	77.364	0.35821	77.333	77.045	77.404	-0.031334					14	12	2	0	0	0	0.28128	1	19946	19946		11.64	0	1	90704	+		35320	13978	20750	20751	42802	42802					0.05334878928965736
QIERPLADF	9	Unmodified	_QIERPLADF_					0	0	0			REV__nc|ENSG00000040933|Q96PE3-2|INPP4A	REV__nc|ENSG00000040933|Q96PE3-2|INPP4A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7921142578125	2	544.790381	1087.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.4	1	112.39	111.89	112.89	-0.015625								0	0	0	0.25631	1	29238	29238		4.3292	0.38484	1		+		35321	13525	20751	20752	42803	42803					0.025928414719373905
QIERSLSVHS	10	Unmodified	_QIERSLSVHS_					0	0	0		ENSG00000198252|ENST00000354586|STYX	ENSG00000198252|ENST00000354586|STYX	ENSG00000198252|ENST00000354586|STYX	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3074951171875	2	578.309469	1154.60439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.06	1	112.06	111.56	112.56	0								0	0	0	0.37739	1	29139	29139		3.2813	0.28607	1				35322	8056	20752	20753	42804	42804					0.033267273866158575
QIFDIWHTR	9	Unmodified	_QIFDIWHTR_					0	0	0			REV__ENST00000453025.1_1_1:21752008-21754429:-|nuORF	REV__ENST00000453025.1_1_1:21752008-21754429:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.2070007324219	3	405.88049	1214.61964	-0.30889	-0.00012537	2.3635	0.00095931	2.0546	0.00083394	406.215168319852	60.233	0.07896	60.222	60.168	60.247	-0.011486					4	2	2	0	0	0	0.33112	1	14696	14696		4.1895	0.31317	1	40107	+		35323	21134	20753	20754	42805	42805					0.020916389744343178
QIFIPSATKEK	11	Unmodified	_QIFIPSATKEK_					0	0	0		ENST00000452439.1_1_19:50016657-50027781:+|nuORF	ENST00000452439.1_1_19:50016657-50027781:+|nuORF	ENST00000452439.1_1_19:50016657-50027781:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2567443847656	3	421.243206	1260.70779	-0.20948	-8.8241E-05	0.33745	0.00014215	0.12797	5.3906E-05	421.2433257619652	14.869	2.2812	14.759	14.391	16.672	-0.10981					221	79	5	0	0	0	0.39244	1	1312	1312		12.228	0.70971	1	857330			35324	10658	20754	20755	42806	42806					0.08786214774409018
QIFKPIISK	9	Unmodified	_QIFKPIISK_					0	0	0		ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.33984375	2	537.33951	1072.66447	0.44643	0.00023989	0.087644	4.7095E-05	0.53408	0.00028698	537.3394757573313	38.026	0.5244	38.117	37.849	38.373	0.090881					47	18	3	0	0	0	0.07944	1	7894	7894		41.956	10.687	1	666890			35325	7884	20755	20756	42807	42807					0.13104069787800654
QIFKPIISK	9	Unmodified	_QIFKPIISK_					0	0	0		ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.3396606445312	2	537.33951	1072.66447	0.44672	0.00024004	-0.18976	-0.00010196	0.25696	0.00013807	537.3394275468397	37.93	0.58221	38.028	37.796	38.378	0.097527					53	20	3	0	0	0	0.064268	1	7876	7876		47.594	11.088	1	596770			35326	7884	20755	20756	42808	42808					0.13104069787800654
QIFLHVTET	9	Unmodified	_QIFLHVTET_					0	0	0			REV__ENST00000341855.4_1_7:56665180-56665615:+|nuORF	REV__ENST00000341855.4_1_7:56665180-56665615:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.6942138671875	2	544.292756	1086.57096	0.37351	0.0002033	1.0471	0.00056993	1.4206	0.00077323	544.2939568871972	22.14	0.28608	22.14	22.017	22.303	0					12	9	2	0	0	0	0.26168	1	3051	3051		1.8442	0	1	36973	+		35327	20118	20756	20757	42809	42809					0.031137256147076187
QIFMQYGDHL	10	Unmodified	_QIFMQYGDHL_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.5645446777344	3	417.865741	1250.57539	0.23595	9.8594E-05	-1.6933	-0.00070755	-1.4573	-0.00060896	417.8651447112132	32.391	0.46177	32.391	32.171	32.633	0					24	16	3	0	0	0	0.31942	1	6122	6122		3.5871	0.26742	1	127430			35328	5477	20757	20758	42810	42810					-0.03987133234022622
QIFNGTFVK	9	Unmodified	_QIFNGTFVK_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000600588.1_1_19:6593418-6593715:+|nuORF;ENST00000397636.2_1_7:99737498-99738123:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2904052734375	2	527.290017	1052.56548	0.76146	0.00040151	0.0044898	2.3674E-06	0.76595	0.00040388	527.2900894159771	47.644	1.2786	47.644	47.328	48.606	0					125	45	5	0	0	0	0.0037449	2	10852	10804;10852		96.367	13.837	1	15285000			35329	4775	20758	20759	42811;42812	42812					0.04130046822888289
QIFNGTFVK	9	Unmodified	_QIFNGTFVK_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000600588.1_1_19:6593418-6593715:+|nuORF;ENST00000397636.2_1_7:99737498-99738123:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2903442382812	2	527.290017	1052.56548	0.66925	0.00035289	0.023583	1.2435E-05	0.69283	0.00036532	527.2900804462265	47.581	1.3352	47.629	47.266	48.601	0.047523					135	49	5	0	0	0	0.0024096	3	10816	10768;10816;10867		106.94	17.024	1	16082000			35330	4775	20758	20759	42813;42814;42815	42814					0.04130046822888289
QIFNGTFVK	9	Unmodified	_QIFNGTFVK_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000600588.1_1_19:6593418-6593715:+|nuORF;ENST00000397636.2_1_7:99737498-99738123:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2904663085938	2	527.290017	1052.56548	0.84401	0.00044504	-0.17032	-8.9808E-05	0.67369	0.00035523	527.2899883837089	47.565	1.2099	47.608	47.323	48.533	0.04332					128	45	5	0	0	0	0.0037449	2	10813	10767;10813		96.367	13.837	1	15337000			35331	4775	20758	20759	42816;42817	42817					0.04130046822888289
QIFRPDNFVF	10	Unmodified	_QIFRPDNFVF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000188229|ENST00000340384|TUBB4B;TUBB|p.M233Cfs*14|1|0.3|ENSG00000196230|chr6:30723759-30723766|ATGAGTGG/-|frameshift_variant;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140135770-140136775:+|nuORF	ENSG00000196230|ENST00000327892|TUBB;ENST00000604929.1_1_9:140135770-140136775:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8323364257812	2	641.83258	1281.65061	0.40926	0.00026268	0.19766	0.00012687	0.60692	0.00038954	641.8326826277536	70.323	0.47429	70.323	70.131	70.605	0					22	16	2	0	0	0	0.34483	1	17845	17845		13.615	6.0059	1	155540			35332	7841;12285	20759	20760	42818	42818					0.02104792288673707
QIFRPDNFVF	10	Unmodified	_QIFRPDNFVF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000188229|ENST00000340384|TUBB4B;TUBB|p.M233Cfs*14|1|0.3|ENSG00000196230|chr6:30723759-30723766|ATGAGTGG/-|frameshift_variant;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140135770-140136775:+|nuORF	ENSG00000196230|ENST00000327892|TUBB;ENST00000604929.1_1_9:140135770-140136775:+|nuORF	ENSG00000196230|ENST00000327892|TUBB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	641.83258	1281.65061	0.53195	0.00034142	0.029617	1.9009E-05	0.56156	0.00036043	641.8326539915823	70.387	0.47585	70.362	70.214	70.69	-0.024872	0.019741	-0.00010738	NaN	13.615	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172350			35333	7841;12285	20759	20760							0.02104792288673707
QIFSEFLLK	9	Unmodified	_QIFSEFLLK_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8212280273438	2	562.82115	1123.62775	0.27808	0.00015651	0.30061	0.00016919	0.57868	0.0003257	562.8211111710642	68.995	1.0517	68.995	68.708	69.76	0					104	37	5	0	0	0	0.05341	1	17451	17451		51.63	9.7902	1	1562000			35334	2674	20760	20761	42819	42819					0.07087773171224399
QIFSEFLLK	9	Unmodified	_QIFSEFLLK_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8213500976562	2	562.82115	1123.62775	0.46617	0.00026237	0.18512	0.00010419	0.65129	0.00036656	562.8210329804756	68.963	0.76576	69.035	68.758	69.524	0.071945					93	27	5	0	0	0	0.016723	1	17424	17424		69.105	19.172	1	1565600			35335	2674	20760	20761	42820	42820					0.07087773171224399
QIFSEFLLK	9	Unmodified	_QIFSEFLLK_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8213500976562	2	562.82115	1123.62775	0.24194	0.00013617	0.36423	0.000205	0.60616	0.00034116	562.8211570177143	69.033	0.72543	69.014	68.766	69.492	-0.019157					87	25	5	0	0	0	0.05341	1	17445	17445		51.63	9.7902	1	1785800			35336	2674	20760	20761	42821	42821					0.07087773171224399
QIGCIPPK	8	Unmodified	_QIGCIPPK_					0	0	0		USP36|p.N502I|1|0.08|ENSG00000055483|chr17:78807539-78807539|T/A|missense_variant	USP36|p.N502I|1|0.08|ENSG00000055483|chr17:78807539-78807539|T/A|missense_variant	USP36|p.N502I|1|0.08|ENSG00000055483|chr17:78807539-78807539|T/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2157287597656	2	428.241481	854.468409	-0.12057	-5.1632E-05	3.7046	0.0015865	3.5841	0.0015349	428.24159308693817	19.572	0.92442	19.456	19.086	20.01	-0.11592					37	31	2	0	0	0	0.34337	1	2268	2268		5.2307	2.3415	1	40283			35337	23410	20761	20762	42822	42822					0.03535361342255783
QIGKPVSLK	9	Unmodified	_QIGKPVSLK_					0	0	0			REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.5942077636719	2	485.30821	968.601866	0.32777	0.00015907	-1.4322	-0.00069507	-1.1045	-0.000536	485.30787793067583	24.007	0.17236	23.968	23.909	24.081	-0.038927					7	5	2	0	0	0	0.25706	1	3651	3651		6.7232	0	1	15579	+		35338	16879	20762	20763	42823	42823					0.11630923719610564
QIGPAPPLK	9	Unmodified	_QIGPAPPLK_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.7582702636719	2	460.781828	919.549102	0.20836	9.6007E-05	0.23632	0.00010889	0.44468	0.0002049	460.7817776841129	35.966	0.4364	36.049	35.823	36.259	0.082359					34	15	3	0	0	0	0.23784	1	7234	7234		13.906	5.9959	1	356700			35339	1252	20763	20764	42824	42824					0.08610965656794178
QIGPAPPLK	9	Unmodified	_QIGPAPPLK_					0	0	0		ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	ENSG00000084774|ENST00000264705|CAD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.7582092285156	2	460.781828	919.549102	0.3735	0.0001721	0.079055	3.6427E-05	0.45256	0.00020853	460.78173681392246	35.948	0.5097	36.034	35.79	36.3	0.08625					29	18	2	0	0	0	0.23784	1	7228	7228		19.257	6.7254	1	330740			35340	1252	20763	20764	42825	42825					0.08610965656794178
QIHLIKERFV	10	Unmodified	_QIHLIKERFV_					0	0	0			REV__nc|ENSG00000107201|O95786-2|RIGI	REV__nc|ENSG00000107201|O95786-2|RIGI	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8831787109375	2	641.885147	1281.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.763	1	93.849	93.349	94.349	0.08667								0	0	0	0.37739	1	24981	24981		3.2813	0.78282	1		+		35341	14547	20764	20765	42826	42826					0.1261333348509197
QIHLIKERFV	10	Unmodified	_QIHLIKERFV_					0	0	0			REV__nc|ENSG00000107201|O95786-2|RIGI	REV__nc|ENSG00000107201|O95786-2|RIGI	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.88232421875	2	641.885147	1281.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.662	1	98.712	98.212	99.212	0.050888								0	0	0	0.37739	1	26411	26411		3.2813	0.28607	1		+		35342	14547	20764	20765	42827	42827					0.1261333348509197
QIHLIKERFV	10	Unmodified	_QIHLIKERFV_					0	0	0			REV__nc|ENSG00000107201|O95786-2|RIGI	REV__nc|ENSG00000107201|O95786-2|RIGI	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8823852539062	2	641.885147	1281.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.86	1	100.86	100.36	101.36	-0.0054703								0	0	0	0.37739	1	26957	26957		3.2813	0.54611	1		+		35343	14547	20764	20765	42828	42828					0.1261333348509197
QIIRTLQL	8	Unmodified	_QIIRTLQL_					0	0	0		nc|ENSG00000132972|Q9BXT8-4|RNF17;nc|ENSG00000132972|Q9BXT8-5|RNF17;ENSG00000132972|ENST00000255324|RNF17;nc|ENSG00000132972|Q9BXT8-2|RNF17;nc|ENSG00000132972|Q9BXT8-1|RNF17;RNF17|p.R1023Kfs*14|1|0.05|ENSG00000132972|chr13:24845045-24845046|-/AACAATACAAAAT|frameshift_variant	nc|ENSG00000132972|Q9BXT8-4|RNF17	nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.81365966796875	2	492.813659	983.612765	0.60562	0.00029846	0.33816	0.00016665	0.94379	0.00046511	492.8136474551497	55.208	0.72206	55.279	55.055	55.777	0.070885					50	26	2	0	0	0	0.23736	1	13098	13098		37.974	0	1	1689400			35344	3685	20765	20766	42829	42829					0.12030326093906751
QIISTILKI	9	Unmodified	_QIISTILKI_					0	0	0		ENSG00000213215|ENST00000641412|OR2F1	ENSG00000213215|ENST00000641412|OR2F1	ENSG00000213215|ENST00000641412|OR2F1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.8395385742188	2	514.839342	1027.66413	0.34465	0.00017744	0.17672	9.0983E-05	0.52137	0.00026842	514.8393556954964	65.662	0.79731	65.651	65.372	66.169	-0.011337					69	28	4	0	0	0	0.21447	1	16427	16427		21.537	1.1224	1	1451000			35345	8337	20766	20767	42830	42830					0.15140650067951356
QIKLPERDRK	10	Unmodified	_QIKLPERDRK_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.3841552734375	2	641.883136	1281.75172	-0.015618	-1.0025E-05	-0.36836	-0.00023644	-0.38397	-0.00024647	641.8828080922044	99.213	0.65727	99.213	98.867	99.524	0					146	81	2	0	0	0	0.41701	1	26579	26579		0.35063	0.043601	1	148810			35346	5950	20767	20768	42831	42831					0.12211243991373522
QIKPLRAREQ	10	Unmodified	_QIKPLRAREQ_					0	0	0			REV__ENSG00000065613|ENST00000369755|SLK	REV__ENSG00000065613|ENST00000369755|SLK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3726196289062	2	619.870028	1237.7255	0.29543	0.00018313	-0.1832	-0.00011356	0.11223	6.9568E-05	619.8690396100932	94.564	1.5426	94.562	93.798	95.341	-0.0020142					222	130	2	0	0	0	0.41085	1	25089	25089		1.4819	0	1	200390	+		35347	13668	20768	20769	42832	42832					0.11614974819917734
QIKRMLFLFA	10	Unmodified	_QIKRMLFLFA_					0	0	0			REV__nc|ENSG00000111291|Q9NZD1-2|GPRC5D	REV__nc|ENSG00000111291|Q9NZD1-2|GPRC5D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3683471679688	2	633.873194	1265.73183	-0.062097	-3.9362E-05	0.035295	2.2372E-05	-0.026803	-1.699E-05	633.8717797046522	114.5	0.16782	114.5	114.4	114.57	0					24	19	2	0	0	0	0.32165	1	29695	29695		0.45834	0.057624	1	29359	+		35348	14716	20769	20770	42833	42833					0.10959776727077042
QILDSCYSF	9	Unmodified	_QILDSCYSF_					0	0	0			REV__ENST00000416749.1_3_6:27326520-27327366:-|nuORF	REV__ENST00000416749.1_3_6:27326520-27327366:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.831787109375	2	538.241875	1074.4692	0.68959	0.00037117	4.0428	0.002176	4.7324	0.0025472	538.2463918944967	65.706	0.33112	65.695	65.53	65.861	-0.011337					14	11	2	0	0	0	0.24848	1	16362	16362		9.3831	3.029	1	180600	+		35349	20822	20770	20771	42834	42834					-0.06505888799370041
QILVIAPRWSL	11	Unmodified	_QILVIAPRWSL_					0	0	0			REV__ENST00000587928.5_1_19:10792469-10795138:+|nuORF	REV__ENST00000587928.5_1_19:10792469-10795138:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.280029296875	3	432.599324	1294.77614	-0.0061083	-2.6424E-06	-0.55958	-0.00024207	-0.56569	-0.00024472	432.59896468037937	49.809	0.69174	49.854	49.342	50.033	0.044888					37	25	2	0	0	0	0.33284	1	11472	11472		3.3557	1.073	1	233600	+		35350	22540	20771	20772	42835	42835					0.14054504144928615
QILYSSQSF	9	Unmodified	_QILYSSQSF_					0	0	0			REV__nc|ENSG00000197951|Q9NQZ8|ZNF71	REV__nc|ENSG00000197951|Q9NQZ8|ZNF71	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2805786132812	2	536.769114	1071.52368	0.17164	9.2133E-05	3.6379	0.0019527	3.8096	0.0020449	536.7722781851107	76.535	0.2115	76.588	76.512	76.724	0.053413					9	7	2	0	0	0	0.24848	1	19724	19724		13.906	0	1	62551	+		35351	18783	20772	20773	42836	42836					-0.00922553656278069
QIMYVFTDDEF	11	Unmodified	_QIMYVFTDDEF_					0	0	0			REV__ADAM23|p.E232Q|1|0.03|ENSG00000114948|chr2:206543290-206543290|G/C|missense_variant	REV__ADAM23|p.E232Q|1|0.03|ENSG00000114948|chr2:206543290-206543290|G/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.27679443359375	3	469.876083	1406.60642	0.20332	9.5536E-05	-1.7082	-0.00080266	-1.5049	-0.00070713	469.8752130120168	30.38	0.25048	30.407	30.246	30.496	0.027946					19	8	3	0	0	0	0.3333	1	5523	5523		1.3296	0.82369	1	64267	+		35352	13078	20773	20774	42837	42837					-0.08062024710466176
QIMYVFTDDEF	11	Unmodified	_QIMYVFTDDEF_					0	0	0			REV__ADAM23|p.E232Q|1|0.03|ENSG00000114948|chr2:206543290-206543290|G/C|missense_variant	REV__ADAM23|p.E232Q|1|0.03|ENSG00000114948|chr2:206543290-206543290|G/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2426452636719	3	469.876083	1406.60642	0.15043	7.0685E-05	-1.8596	-0.0008738	-1.7092	-0.00080312	469.87519006389726	29.391	0.43212	29.403	29.19	29.622	0.012266					21	14	2	0	0	0	0.33334	1	5189	5189		1.2148	0.70888	1	105030	+		35353	13078	20773	20774	42838	42838					-0.08062024710466176
QIMYVFTDDEF	11	Unmodified	_QIMYVFTDDEF_					0	0	0			REV__ADAM23|p.E232Q|1|0.03|ENSG00000114948|chr2:206543290-206543290|G/C|missense_variant	REV__ADAM23|p.E232Q|1|0.03|ENSG00000114948|chr2:206543290-206543290|G/C|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	469.876083	1406.60642	0.2493	0.00011714	-2.0867	-0.00098051	-1.8375	-0.00086338	469.87509084018393	29.396	0.41879	29.396	29.3	29.718	0	-0.026087	-0.0002253	NaN	0.40827	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96967	+		35354	13078	20773	20774							-0.08062024710466176
QIMYVFTDDEF	11	Unmodified	_QIMYVFTDDEF_					0	0	0			REV__ADAM23|p.E232Q|1|0.03|ENSG00000114948|chr2:206543290-206543290|G/C|missense_variant	REV__ADAM23|p.E232Q|1|0.03|ENSG00000114948|chr2:206543290-206543290|G/C|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	469.876083	1406.60642	0.031858	1.4969E-05	-1.7038	-0.00080056	-1.6719	-0.0007856	469.87523551489784	29.454	0.37557	29.468	29.248	29.623	0.013474	0.04517	0.00031455	NaN	0.40827	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76849	+		35355	13078	20773	20774							-0.08062024710466176
QINDSNIIGEK	11	Unmodified	_QINDSNIIGEK_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.8838806152344	3	410.882337	1229.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.093	1	19.977	19.477	20.477	-0.11592								0	0	0	0.34975	1	2434	2434		8.2864	1.1847	1				35356	8266	20774	20775	42839	42839					0.019552729756242115
QINETHQK	8	Unmodified	_QINETHQK_					0	0	0			REV__ENSG00000154240|ENST00000535342|CEP112	REV__ENSG00000154240|ENST00000535342|CEP112	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2691650390625	2	499.256705	996.498858	0.060369	3.014E-05	0.5862	0.00029267	0.64657	0.00032281	499.2570019856088	14.261	0.2802	14.261	14.055	14.335	0					17	9	2	0	0	0	0.3671	1	692	692		23.148	1.4018	1	158000	+		35357	16653	20775	20776	42840	42840					0.0004681126099512767
QINGFILII	9	Unmodified	_QINGFILII_					0	0	0		ENSG00000177182|ENST00000325897|CLVS1	ENSG00000177182|ENST00000325897|CLVS1	ENSG00000177182|ENST00000325897|CLVS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.819091796875	2	515.81841	1029.62227	0.59828	0.0003086	0.085121	4.3907E-05	0.6834	0.00035251	515.8185493247903	65.914	0.68433	65.914	65.608	66.292	0					53	24	3	0	0	0	0.24581	1	16448	16448		16.942	0	1	786010			35358	6968	20776	20777	42841	42841					0.10864094379417111
QINGFILII	9	Unmodified	_QINGFILII_					0	0	0		ENSG00000177182|ENST00000325897|CLVS1	ENSG00000177182|ENST00000325897|CLVS1	ENSG00000177182|ENST00000325897|CLVS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.8189086914062	2	515.81841	1029.62227	0.3502	0.00018064	0.32522	0.00016775	0.67541	0.00034839	515.8186010907866	65.9	0.68784	65.888	65.641	66.329	-0.01133					48	24	3	0	0	0	0.20344	1	16436	16436		23.148	0	1	719940			35359	6968	20776	20777	42842	42842					0.10864094379417111
QINIVATVV	9	Unmodified	_QINIVATVV_					0	0	0		ENSG00000166535|ENST00000299698|A2ML1	ENSG00000166535|ENST00000299698|A2ML1	ENSG00000166535|ENST00000299698|A2ML1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7442321777344	2	478.792392	955.570232	0.1796	8.5989E-05	-0.30266	-0.00014491	-0.12306	-5.8922E-05	478.7922113219611	21.627	0.61204	21.627	21.31	21.922	0					29	21	2	0	0	0	0.26168	1	2981	2981		1.8442	0	1	58387			35360	6092	20777	20778	42843	42843					0.09066930965661868
QIPQLPAPPK	10	Unmodified	_QIPQLPAPPK_					0	0	0		ENST00000585605.1_1_19:5678827-5679734:-|nuORF;ENSG00000174917|ENST00000309324|MICOS13	ENST00000585605.1_1_19:5678827-5679734:-|nuORF	ENST00000585605.1_1_19:5678827-5679734:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.31103515625	2	544.826766	1087.63898	0.72546	0.00039525	-0.16076	-8.7586E-05	0.5647	0.00030767	544.8265420574379	47.745	0.7146	47.745	47.162	47.877	0					50	25	3	0	0	0	0.21475	1	10854	10854		31.268	10.815	1	493570			35361	6827	20778	20779	42844	42844					0.09866595265361866
QIPQLPAPPK	10	Unmodified	_QIPQLPAPPK_					0	0	0		ENST00000585605.1_1_19:5678827-5679734:-|nuORF;ENSG00000174917|ENST00000309324|MICOS13	ENST00000585605.1_1_19:5678827-5679734:-|nuORF	ENST00000585605.1_1_19:5678827-5679734:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3109130859375	2	544.826766	1087.63898	0.77886	0.00042434	0.12052	6.5664E-05	0.89938	0.00049001	544.8263809482055	47.58	0.53419	47.627	47.238	47.772	0.04752					48	19	4	0	0	0	0.31143	1	10838	10838		17.113	6.289	1	515120			35362	6827	20778	20779	42845	42845					0.09866595265361866
QIPQLPAPPK	10	Unmodified	_QIPQLPAPPK_					0	0	0		ENST00000585605.1_1_19:5678827-5679734:-|nuORF;ENSG00000174917|ENST00000309324|MICOS13	ENST00000585605.1_1_19:5678827-5679734:-|nuORF	ENST00000585605.1_1_19:5678827-5679734:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.826904296875	2	544.826766	1087.63898	0.95777	0.00052182	-0.55787	-0.00030394	0.3999	0.00021788	544.826376559373	47.764	0.74522	47.807	47.157	47.902	0.04332					52	27	3	0	0	0	0.18562	1	10805	10805		34.402	16.255	1	1009400			35363	6827	20778	20779	42846	42846					0.09866595265361866
QIPTPVEYGSK	11	Unmodified	_QIPTPVEYGSK_					0	0	0			REV__nc|ENSG00000118197|Q5T1V6-2|DDX59	REV__nc|ENSG00000118197|Q5T1V6-2|DDX59	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.8841857910156	3	406.883677	1217.6292	0.24873	0.0001012	0.62159	0.00025291	0.87032	0.00035412	406.88388277831797	20.909	1.2682	20.799	20.495	21.763	-0.11003					131	44	5	0	0	0	0.33432	1	2700	2700		19.144	0.77085	1	737020	+		35364	15002	20779	20780	42847	42847					0.02909362469313237
QIPTPVEYGSK	11	Unmodified	_QIPTPVEYGSK_					0	0	0			REV__nc|ENSG00000118197|Q5T1V6-2|DDX59	REV__nc|ENSG00000118197|Q5T1V6-2|DDX59	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.8841857910156	3	406.883677	1217.6292	0.17522	7.1295E-05	0.54413	0.0002214	0.71935	0.00029269	406.8838907458729	20.799	1.2934	20.746	20.448	21.741	-0.052912					160	45	6	0	0	0	0.33432	1	2654	2654		19.144	0.77085	1	858420	+		35365	15002	20779	20780	42848	42848					0.02909362469313237
QIQAKEYMKP	10	Unmodified	_QIQAKEYMKP_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.89849853515625	3	412.553274	1234.63799	-0.17364	-7.1636E-05	-2.9066	-0.0011991	-3.0802	-0.0012708	412.5519371467275	14.05	0.23441	13.984	13.802	14.037	-0.066068					11	7	2	0	0	0	0.32034	1	553	553		4.7159	0	1	20279			35366	3725	20780	20781	42849	42849					0.030060128341574455
QIQDARAALS	10	Unmodified	_QIQDARAALS_					0	0	0		ENST00000599538.5_1_19:50528609-50528858:-|nuORF	ENST00000599538.5_1_19:50528609-50528858:-|nuORF	ENST00000599538.5_1_19:50528609-50528858:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7839965820312	2	536.790912	1071.56727	0.32827	0.00017621	-0.013447	-7.2185E-06	0.31483	0.000169	536.7908669735673	27.353	0.35621	27.353	27.146	27.502	0					31	11	3	0	0	0	0.33104	1	4622	4622		16.149	2.5342	1	322990			35367	12241	20781	20782	42850	42850					0.034350558408505094
QIQDARAALS	10	Unmodified	_QIQDARAALS_					0	0	0		ENST00000599538.5_1_19:50528609-50528858:-|nuORF	ENST00000599538.5_1_19:50528609-50528858:-|nuORF	ENST00000599538.5_1_19:50528609-50528858:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7841186523438	2	536.790912	1071.56727	0.16131	8.659E-05	0.1553	8.3366E-05	0.31661	0.00016996	536.7908741987784	27.361	0.3634	27.34	27.13	27.493	-0.021412					31	12	3	0	0	0	0.35637	1	4598	4598		11.495	2.7493	1	386080			35368	12241	20781	20782	42851	42851					0.034350558408505094
QIQPPRVGGP	10	Unmodified	_QIQPPRVGGP_					0	0	0			REV__ENST00000468101.5_1_3:183353437-183368104:+|nuORF	REV__ENST00000468101.5_1_3:183353437-183368104:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2671508789062	2	524.79854	1047.58253	0.085988	4.5126E-05	-0.97659	-0.00051251	-0.8906	-0.00046739	524.7982366667285	12.998	0.28238	12.931	12.819	13.102	-0.067495					17	9	3	0	0	0	0.32132	1	269	269		1.4819	0.15237	1	61238	+		35369	21317	20782	20783	42852	42852					0.06063967428713113
QIQQICPLVFV	11	Unmodified	_QIQQICPLVFV_					0	0	0			REV__ENST00000484693.1_1_6:30709567-30709678:-|nuORF	REV__ENST00000484693.1_1_6:30709567-30709678:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.360595703125	2	644.360116	1286.70568	0.49541	0.00031922	0.44423	0.00028624	0.93964	0.00060547	644.3603440032442	87.403	2.6057	87.491	86.783	89.389	0.087097					308	124	3	0	0	0	0.46059	1	23209	23209		3.2813	3.2813	1	776620	+		35370	15854	20783	20784	42853	42853					0.07379462764924938
QIQSDDQAQF	10	Unmodified	_QIQSDDQAQF_					0	0	0			REV__ENST00000512755.1_1_13:33101488-33110480:-|nuORF	REV__ENST00000512755.1_1_13:33101488-33110480:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.2902221679688	2	590.267467	1178.52038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.445	1	80.418	79.918	80.918	-0.026825								0	0	0	0.35421	1	20892	20892		13.042	2.2185	1		+		35371	19206	20784	20785	42854	42854					-0.061738485009755095
QIQVLFPLF	9	Unmodified	_QIQVLFPLF_					0	0	0		ENST00000463645.1_1_2:132491378-132509159:+|nuORF	ENST00000463645.1_1_2:132491378-132509159:+|nuORF	ENST00000463645.1_1_2:132491378-132509159:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.2454833984375	2	552.826235	1103.63792	0.53635	0.00029651	-0.14998	-8.2915E-05	0.38637	0.0002136	552.8259061002015	58.649	1.1296	58.634	58.358	59.488	-0.014267					74	39	3	0	0	0	0.21905	1	14374	14374		16.942	0	1	709520			35372	10768	20785	20786	42855	42855					0.09024380896448747
QIRENDFLTF	10	Unmodified	_QIRENDFLTF_					0	0	0		ENST00000588652.5_1_19:45854889-45860860:-|nuORF;ENST00000391942.6_1_19:45854889-45865127:-|nuORF;ENSG00000104884|ENST00000391945|ERCC2	ENST00000588652.5_1_19:45854889-45860860:-|nuORF	ENST00000588652.5_1_19:45854889-45860860:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.91375732421875	3	428.21906	1281.63535	0.020354	8.716E-06	-0.62347	-0.00026698	-0.60312	-0.00025827	428.21862506975697	23.688	0.57445	23.649	23.391	23.965	-0.038927					32	19	2	0	0	0	0.32068	1	3598	3598		3.5871	0	1	234910			35373	1930	20786	20787	42856	42856					0.00579880700843205
QIRTNGSAL	9	Unmodified	_QIRTNGSAL_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2672119140625	2	480.267073	958.519593	0.14254	6.8457E-05	-0.067375	-3.2358E-05	0.075164	3.6099E-05	480.26693139571944	23.665	0.6842	23.593	23.34	24.024	-0.072559					56	23	3	0	0	0	0.14076	1	3509	3509		32.305	0	1	412750			35374	7014	20787	20788	42857	42857					0.03867401640661683
QIRTNGSAL	9	Unmodified	_QIRTNGSAL_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.26708984375	2	480.267073	958.519593	0.32532	0.00015624	-0.30404	-0.00014602	0.021286	1.0223E-05	480.266856209963	23.629	0.77061	23.59	23.364	24.135	-0.038927					55	26	3	0	0	0	0.018449	1	3496	3496		66.457	22.598	1	327120			35375	7014	20787	20788	42858	42858					0.03867401640661683
QISEVVVVK	9	Unmodified	_QISEVVVVK_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.80511474609375	2	500.8055	999.596446	0.079141	3.9634E-05	-0.34734	-0.00017395	-0.2682	-0.00013431	500.80525011800046	38.545	1.2151	38.545	38.295	39.51	0					92	43	4	0	0	0	0.0079761	3	8035	8035;8085;8139		82.529	23.035	1	2735500			35376	1491	20788	20789	42859;42860;42861	42859					0.09663200137140393
QISEVVVVK	9	Unmodified	_QISEVVVVK_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8052978515625	2	500.8055	999.596446	0.38693	0.00019378	-0.76659	-0.00038391	-0.37966	-0.00019014	500.8050447203723	38.484	1.0106	38.575	38.32	39.331	0.090881					87	36	4	0	0	0	0.014206	3	8015	8015;8064;8117		72.968	23.035	1	2907200			35377	1491	20788	20789	42862;42863;42864	42862					0.09663200137140393
QISEVVVVK	9	Unmodified	_QISEVVVVK_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8053283691406	2	500.8055	999.596446	0.41197	0.00020632	-0.70719	-0.00035416	-0.29522	-0.00014785	500.80508112778654	38.416	1.128	38.513	38.294	39.422	0.097527					87	40	4	0	0	0	0.0079761	3	8039	7990;8039;8089		82.529	23.85	1	2876100			35378	1491	20788	20789	42865;42866;42867	42866					0.09663200137140393
QISKSGRIK	9	Unmodified	_QISKSGRIK_					0	0	0		L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|8|1|sense	L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|8|1|sense	L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|8|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.30206298828125	2	508.81419	1015.61383	0.16208	8.247E-05	3.3754	0.0017174	3.5375	0.0017999	508.8156266021823	49.513	0.33261	49.545	49.295	49.628	0.032047					14	11	2	0	0	0	0.24787	1	11328	11328		10.8	0	1	89253			35379	12464	20789	20790	42868	42868					0.10664540462801142
QISKSGRIK	9	Unmodified	_QISKSGRIK_					0	0	0		L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|8|1|sense	L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|8|1|sense	L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|8|1|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	508.81419	1015.61383	0.25332	0.00012889	5.0797	0.0025846	5.333	0.0027135	508.81661093375004	49.763	0.07616	49.807	49.749	49.825	0.044891	0.13123	0.00083687	NaN	10.8	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32516			35380	12464	20789	20790							0.10664540462801142
QITKLSGF	8	Unmodified	_QITKLSGF_					0	0	0			REV__nc|ENSG00000266412|Q13772-2|NCOA4	REV__nc|ENSG00000266412|Q13772-2|NCOA4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.2434997558594	2	447.258185	892.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.275	1	62.275	61.775	62.775	0								0	0	0	0.35985	1	15354	15354		10.183	1.5901	1		+		35381	19301	20790	20791	42869	42869					0.051266863858245415
QITPRTEEEK	10	Unmodified	_QITPRTEEEK_					0	0	0		ENST00000498228.1_1_1:55014277-55063089:+|nuORF;ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11	ENST00000498228.1_1_1:55014277-55063089:+|nuORF	ENST00000498228.1_1_1:55014277-55063089:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.884033203125	3	410.882337	1229.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.869	1	19.869	19.369	20.369	0								0	0	0	0.35142	1	2364	2364		14.218	2.5868	1				35382	5564	20791	20792	42870	42870					0.019552729756242115
QITTLIISK	9	Unmodified	_QITTLIISK_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.1688232421875	2	508.82115	1015.62775	0.45515	0.00023159	-0.092067	-4.6846E-05	0.36308	0.00018474	508.8212268912823	46.83	0.25789	46.885	46.681	46.939	0.054375					11	8	2	0	0	0	0.24584	1	10573	10573		8.9762	4.647	1	290170			35383	5891	20792	20793	42871	42871					0.12055773171232431
QIVEKMHVD	9	Unmodified	_QIVEKMHVD_					0	0	0			REV__ENSG00000138381|ENST00000260952|ASNSD1	REV__ENSG00000138381|ENST00000260952|ASNSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2687377929688	2	549.784241	1097.55393	0.21348	0.00011737	0.2534	0.00013931	0.46688	0.00025668	549.7840807436626	27.462	0.4325	27.45	27.213	27.645	-0.01156					20	14	2	0	0	0	0.25843	1	4621	4621		5.7319	0.83484	1	107680	+		35384	15926	20793	20794	42872	42872					0.009054817372543766
QIVHAHKS	8	Unmodified	_QIVHAHKS_					0	0	0			REV__ENSG00000188818|ENST00000283441|ZDHHC11	REV__ENSG00000188818|ENST00000283441|ZDHHC11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.77447509765625	2	460.259051	918.503549	-0.12412	-5.7126E-05	-0.674	-0.00031022	-0.79812	-0.00036734	460.25851514248717	15.522	0.26351	15.413	15.285	15.549	-0.10981					10	8	2	0	0	0	0.34367	1	1023	1023		4.3292	0	1	12897	+		35385	18574	20794	20795	42873	42873					0.04103740194409511
QIVITRPQ	8	Unmodified	_QIVITRPQ_					0	0	0		ENSG00000156689|ENST00000287275|GLYATL2	ENSG00000156689|ENST00000287275|GLYATL2	ENSG00000156689|ENST00000287275|GLYATL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.2801513671875	2	477.790184	953.565815	0.17429	8.3274E-05	0.14495	6.9254E-05	0.31924	0.00015253	477.7903074718246	23.058	0.34939	23.013	22.847	23.197	-0.044867					21	12	2	0	0	0	0.34378	1	3309	3309		3.9444	0.66309	1	70645			35386	5249	20795	20796	42874	42874					0.08717466542748298
QIVTRYLTL	9	Unmodified	_QIVTRYLTL_					0	0	0			REV__nc|ENSG00000129003|Q709C8-4|VPS13C	REV__nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3318481445312	2	553.832049	1105.64954	0.58983	0.00032666	-0.28752	-0.00015924	0.30231	0.00016743	553.8320060534667	41.645	1.1773	41.741	41.6	42.778	0.096622					81	44	2	0	0	0	0.23007	1	9150	9150		19.257	0	1	6447900	+		35387	15396	20796	20797	42875	42875					0.10094577919790026
QIVVLYEEKAE	11	Unmodified	_QIVVLYEEKAE_					0	0	0			REV__ENSG00000150394|ENST00000577390|CDH8	REV__ENSG00000150394|ENST00000577390|CDH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.913818359375	3	440.906371	1319.69728	0.29518	0.00013015	-0.45399	-0.00020017	-0.1588	-7.0018E-05	440.90617786832786	21.31	0.23372	21.2	21.121	21.355	-0.11003					10	7	2	0	0	0	0.33169	1	2798	2798		6.2344	0	1	48666	+		35388	16495	20797	20798	42876	42876					0.050221873293367025
QIYTYFVYK	9	Unmodified	_QIYTYFVYK_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.3192749023438	2	612.818607	1223.62266	0.26676	0.00016347	-0.057808	-3.5426E-05	0.20895	0.00012805	612.8185307051941	57.731	0.40076	57.731	57.552	57.953	0					34	14	3	0	0	0	0.19157	1	13975	13975		32.786	17.537	1	687010			35389	535	20798	20799	42877	42877					0.019794693085941617
QIYTYFVYK	9	Unmodified	_QIYTYFVYK_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	612.818607	1223.62266	0.2908	0.00017821	-0.19365	-0.00011867	0.097149	5.9535E-05	612.8182170415697	57.544	0.52249	57.629	57.343	57.865	0.085621	-0.095809	-4.9117E-05	NaN	32.786	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	679270			35390	535	20798	20799							0.019794693085941617
QIYTYFVYK	9	Unmodified	_QIYTYFVYK_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	612.818607	1223.62266	0.21256	0.00013026	-0.16349	-0.00010019	0.049074	3.0073E-05	612.8183734290429	57.832	0.50464	57.814	57.582	58.087	-0.0172	0.089389	-1.2142E-05	NaN	32.786	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	704620			35391	535	20798	20799							0.019794693085941617
QIYYNRPLSL	10	Unmodified	_QIYYNRPLSL_					0	0	0			REV__ENST00000547670.5_1_12:49494396-49503620:-|nuORF	REV__ENST00000547670.5_1_12:49494396-49503620:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.87646484375	3	422.89955	1265.67682	0.087763	3.7115E-05	-0.49138	-0.00020781	-0.40362	-0.00017069	422.8993910278073	43.379	0.38909	43.463	43.268	43.657	0.083992					16	13	2	0	0	0	0.31955	1	9473	9473		6.6235	4.1887	1	156230	+		35392	22182	20799	20800	42878	42878					0.05461061460187011
QKAALIDKDL	10	Unmodified	_QKAALIDKDL_					0	0	0			REV__ENST00000263629.8_1_2:55495787-55496348:-|nuORF	REV__ENST00000263629.8_1_2:55495787-55496348:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2822265625	2	557.826963	1113.63937	0.088775	4.9521E-05	0.97389	0.00054326	1.0627	0.00059278	557.8275076561722	39.834	0.46287	39.834	39.669	40.132	0					26	16	2	0	0	0	0.31629	1	8396	8396		10.074	2.1638	1	182080	+		35393	19623	20800	20801	42879	42879					0.08709970194558991
QKAELQVVSL	10	Unmodified	_QKAELQVVSL_					0	0	0			REV__ENSG00000182095|ENST00000430969|TNRC18	REV__ENSG00000182095|ENST00000430969|TNRC18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2821044921875	2	557.826963	1113.63937	0.37799	0.00021085	0.65278	0.00036414	1.0308	0.00057499	557.8272717380231	39.672	0.41617	39.765	39.577	39.994	0.09267					24	14	2	0	0	0	0.31358	1	8429	8429		13.906	0	1	211550	+		35394	18177	20801	20802	42880	42880					0.08709970194581729
QKAVERAAP	9	Unmodified	_QKAVERAAP_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-3|DNAH9;ENST00000581682.1_1_17:11787806-11828539:+|nuORF	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.5942077636719	2	485.277441	968.540328	0.21536	0.00010451	2.9482	0.0014307	3.1636	0.0015352	485.2791733133543	24.236	0.39883	24.197	24.049	24.448	-0.038927					21	13	2	0	0	0	0.25706	1	3651	3651		6.7232	0.96273	1	45583			35395	373	20802	20803	42881	42881					0.054799920203208785
QKCFLIKLVF	10	Unmodified	_QKCFLIKLVF_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3721313476562	2	619.87012	1237.72569	0.15333	9.5048E-05	-1.0307	-0.00063891	-0.87739	-0.00054387	619.869172024736	90.678	1.0745	90.769	89.847	90.921	0.090675					164	83	3	0	0	0	0.40992	1	23816	23816		1.6526	0	1	272210	+		35396	16663	20803	20804	42882	42882					0.11633258495567134
QKCFLIKLVF	10	Unmodified	_QKCFLIKLVF_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8687744140625	2	619.87012	1237.72569	0.29543	0.00018313	-0.33075	-0.00020502	-0.035317	-2.1892E-05	619.8690396100932	94.564	1.5426	94.562	93.798	95.341	-0.0020142					222	130	2	0	0	0	0.40992	1	25353	25353		1.6526	0	1	200390	+		35397	16663	20803	20804	42883	42883					0.11633258495567134
QKCFLIKLVF	10	Unmodified	_QKCFLIKLVF_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.372802734375	2	619.87012	1237.72569	0.26797	0.00016611	-0.2257	-0.00013991	0.042267	2.62E-05	619.8689178591079	95.573	0.59771	95.57	95.147	95.745	-0.0038147					87	60	2	0	0	0	0.40992	1	25488	25488		1.6526	0	1	155640	+		35398	16663	20803	20804	42884	42884					0.11633258495567134
QKCFLIKLVF	10	Unmodified	_QKCFLIKLVF_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	619.87012	1237.72569	0.039957	2.4768E-05	-0.43845	-0.00027178	-0.39849	-0.00024701	619.8690411428602	95.731	0.48901	95.731	95.43	95.919	0	0.080733	-0.00014272	NaN	1.6526	74	49	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123240	+		35399	16663	20803	20804							0.11633258495567134
QKCLMKYREL	10	Unmodified	_QKCLMKYREL_					0	0	0			REV__nc|ENSG00000128641|O43795-2|MYO1B	REV__nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.5289611816406	3	437.901909	1310.6839	-0.6575	-0.00028792	0.88329	0.00038679	0.22579	9.8874E-05	437.9023056322128	34.464	0.53124	34.464	34.193	34.725	0					42	18	3	0	0	0	0.31597	1	6825	6825		12.175	3.7304	1	356190	+		35400	15381	20804	20805	42885	42885					0.04098334744753629
QKDEEPVIL	9	Unmodified	_QKDEEPVIL_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.1654663085938	2	535.790047	1069.56554	0.29855	0.00015996	-2.5644	-0.001374	-2.2659	-0.001214	535.7894039955991	94.942	0.1597	94.942	94.883	95.042	0					17	14	2	0	0	0	0.25779	1	25353	25353		6.2058	1.8765	1	41756	+		35401	18449	20805	20806	42886	42886					0.033540020322334385
QKEIIPNRVV	10	Unmodified	_QKEIIPNRVV_					0	0	0			REV__ENST00000496187.5_1_7:6863683-6865828:-|nuORF	REV__ENST00000496187.5_1_7:6863683-6865828:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.7786865234375	2	598.361505	1194.70846	0.61206	0.00036624	-0.14246	-8.524E-05	0.46961	0.000281	598.3611511550553	48.648	0.3628	48.648	48.386	48.749	0					12	12	2	0	0	0	0.31629	1	11116	11116		10.074	0	1	178500	+		35402	15164	20806	20807	42887	42887					0.11889054214111638
QKELCKRK	8	Unmodified	_QKELCKRK_					0	0	0		nc|ENSG00000002745|Q9UBV4-2|WNT16;ENSG00000002745|ENST00000222462|WNT16	nc|ENSG00000002745|Q9UBV4-2|WNT16	nc|ENSG00000002745|Q9UBV4-2|WNT16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.802734375	2	516.802768	1031.59098	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.083	1	11.986	11.486	12.486	-0.096607								0	0	0	0.37724	1	23	23		2.3027	0.82083	1				35403	296	20807	20808	42888	42888					0.07645198073669235
QKELEKLY	8	Unmodified	_QKELEKLY_					0	0	0			REV__ENSG00000052841|ENST00000039989|TTC17	REV__ENSG00000052841|ENST00000039989|TTC17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8187866210938	2	525.795132	1049.57571	0.074677	3.9265E-05	-0.91685	-0.00048207	-0.84217	-0.00044281	525.7949572680484	12.726	0.092137	12.659	12.61	12.702	-0.067496					4	2	2	0	0	0	0.34294	1	213	213		7.2892	1.0834	1	16972	+		35404	13574	20808	20809	42889	42889					0.052906097574805244
QKERNSRP	8	Unmodified	_QKERNSRP_					0	0	0		nc|ENSG00000145242|P54756-3|EPHA5;EPHA5|p.M1026Rfs*6|1|0.3|ENSG00000145242|chr4:65324151-65324151|A/-|frameshift_variant;nc|ENSG00000145242|P54756-2|EPHA5;ENSG00000145242|ENST00000613740|EPHA5;nc|ENSG00000145242|P54756|EPHA5	nc|ENSG00000145242|P54756-3|EPHA5	nc|ENSG00000145242|P54756-3|EPHA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.7882080078125	2	507.775597	1013.53664	-0.060575	-3.0759E-05	1.2677	0.00064371	1.2071	0.00061296	507.7757441370266	14.129	0.18037	14.063	13.917	14.098	-0.066068					7	5	2	0	0	0	0.45023	1	623	623		5.7319	0	1	27477			35405	4639	20809	20810	42890	42890					0.03041322246474465
QKFFIWLRVKK	11	Unmodified	_QKFFIWLRVKK_					0	0	0		ENST00000376083.7_2_9:88296229-88307675:-|nuORF	ENST00000376083.7_2_9:88296229-88307675:-|nuORF	ENST00000376083.7_2_9:88296229-88307675:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.31005859375	3	498.309885	1491.90782	0.37882	0.00018877	-0.062916	-3.1352E-05	0.31591	0.00015742	498.3097733753652	91.836	1.3092	91.927	91.318	92.627	0.090675					269	92	4	0	0	0	0.48558	1	24342	24342		0	0	1	1500100			35406	9919	20810	20811	42891	42891					0.1815473423266667
QKFFIWLRVKK	11	Unmodified	_QKFFIWLRVKK_					0	0	0		ENST00000376083.7_2_9:88296229-88307675:-|nuORF	ENST00000376083.7_2_9:88296229-88307675:-|nuORF	ENST00000376083.7_2_9:88296229-88307675:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.31005859375	3	498.309885	1491.90782	0.51587	0.00025706	-0.13074	-6.515E-05	0.38513	0.00019191	498.30971535667453	91.766	1.1883	91.766	91.42	92.608	0.00047302					217	79	4	0	0	0	0.48495	3	24414	24414;24505;24590		0.08335	0	1	1482100			35407	9919	20810	20811	42892;42893;42894	42892					0.1815473423266667
QKFFRNKY	8	Unmodified	_QKFFRNKY_					0	0	0		ENSG00000204514|ENST00000435989|ZNF814	ENSG00000204514|ENST00000435989|ZNF814	ENSG00000204514|ENST00000435989|ZNF814	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.8101806640625	2	565.808908	1129.60326	0.18374	0.00010396	1.4169	0.00080172	1.6007	0.00090569	565.8097521292925	16.681	0.74494	16.681	16.377	17.122	0					51	25	3	0	0	0	0.46491	1	1460	1460		0.69038	0	1	102570			35408	8232	20811	20812	42895	42895					0.043645578083669534
QKFLFVMF	8	Unmodified	_QKFLFVMF_					0	0	0		nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.311767578125	2	530.288431	1058.56231	0.42086	0.00022318	-0.88189	-0.00046766	-0.46103	-0.00024448	530.2883665865306	19.839	0.331	19.839	19.655	19.986	0					18	11	2	0	0	0	0.34337	1	2396	2396		5.2307	0	1	41075			35409	12984	20812	20813	42896	42896					0.03537080444539242
QKGWWIPN	8	Unmodified	_QKGWWIPN_					0	0	0			REV__ENST00000537695.5_1_12:124118406-124135602:+|nuORF	REV__ENST00000537695.5_1_12:124118406-124135602:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7324829101562	2	514.769252	1027.52395	0.39943	0.00020561	-0.75618	-0.00038926	-0.35675	-0.00018364	514.7687910006109	72.163	0.89853	72.163	71.827	72.726	0					54	32	2	0	0	0	0.34218	1	18524	18524		9.3474	0	1	355170	+		35410	14720	20813	20814	42897	42897					0.011289108542314352
QKHLHLYY	8	Unmodified	_QKHLHLYY_					0	0	0		nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.29638671875	2	551.295633	1100.57671	0.41644	0.00022958	-0.77491	-0.0004272	-0.35847	-0.00019762	551.2953089477944	16.846	0.83262	16.783	16.495	17.327	-0.062534					82	29	5	0	0	0	0.46461	1	1403	1403		0.79363	0	1	227350			35411	5267	20814	20815	42898	42898					0.030448689170498255
QKHLQEGRA	9	Unmodified	_QKHLQEGRA_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.324462890625	2	533.791247	1065.56794	0.33536	0.00017901	-0.65128	-0.00034765	-0.31592	-0.00016864	533.7908994760186	16.107	0.71239	16.044	15.638	16.351	-0.062534					37	24	2	0	0	0	0.25988	1	1307	1307		3.9444	1.3669	1	42037			35412	7145	20815	20816	42899	42899					0.037778952805638255
QKIKLYEKT	9	Unmodified	_QKIKLYEKT_					0	0	0			REV__ENSG00000164197|ENST00000389100|RNF180	REV__ENSG00000164197|ENST00000389100|RNF180	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8427734375	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.28	1	110.28	109.78	110.78	0								0	0	0	0.25197	1	28780	28780		5.7319	0	1		+		35413	17137	20816	20817	42900	42900					0.10690847091268552
QKIKLYEKT	9	Unmodified	_QKIKLYEKT_					0	0	0			REV__ENSG00000164197|ENST00000389100|RNF180	REV__ENSG00000164197|ENST00000389100|RNF180	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8430786132812	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.67	1	112.67	112.17	113.17	0								0	0	0	0.264	1	29278	29278		1.8442	0	1		+		35414	17137	20816	20817	42901	42901					0.10690847091268552
QKIKLYEKT	9	Unmodified	_QKIKLYEKT_					0	0	0			REV__ENSG00000164197|ENST00000389100|RNF180	REV__ENSG00000164197|ENST00000389100|RNF180	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8433227539062	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113	1	113	112.5	113.5	0								0	0	0	0.264	1	29355	29355		1.8442	0	1		+		35415	17137	20816	20817	42902	42902					0.10690847091268552
QKIKLYEKT	9	Unmodified	_QKIKLYEKT_					0	0	0			REV__ENSG00000164197|ENST00000389100|RNF180	REV__ENSG00000164197|ENST00000389100|RNF180	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8433837890625	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.98	1	118.98	118.48	119.48	0								0	0	0	0.264	1	30718	30718		1.8442	0	1		+		35416	17137	20816	20817	42903	42903					0.10690847091268552
QKIKLYEKT	9	Unmodified	_QKIKLYEKT_					0	0	0			REV__ENSG00000164197|ENST00000389100|RNF180	REV__ENSG00000164197|ENST00000389100|RNF180	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.843017578125	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.95	1	114.93	114.43	115.43	-0.019493								0	0	0	0.264	1	29824	29824		1.8442	0	1		+		35417	17137	20816	20817	42904	42904					0.10690847091268552
QKIKLYEKT	9	Unmodified	_QKIKLYEKT_					0	0	0			REV__ENSG00000164197|ENST00000389100|RNF180	REV__ENSG00000164197|ENST00000389100|RNF180	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8427734375	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.91	1	116.89	116.39	117.39	-0.022781								0	0	0	0.264	1	30274	30274		1.8442	0	1		+		35418	17137	20816	20817	42905	42905					0.10690847091268552
QKIKLYEKT	9	Unmodified	_QKIKLYEKT_					0	0	0			REV__ENSG00000164197|ENST00000389100|RNF180	REV__ENSG00000164197|ENST00000389100|RNF180	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8433227539062	2	575.845156	1149.67576	0.40201	0.00023149	-2.3683	-0.0013638	-1.9663	-0.0011323	575.8432071858671	91.653	0.56023	91.654	91.255	91.815	0.00046539					65	36	2	0	0	0	0.33508	1	24353	24353		3.5965	0	1	145240	+		35419	17137	20816	20817	42906	42906					0.10690847091268552
QKIKLYEKT	9	Unmodified	_QKIKLYEKT_					0	0	0			REV__ENSG00000164197|ENST00000389100|RNF180	REV__ENSG00000164197|ENST00000389100|RNF180	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8433227539062	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.56	1	113.57	113.07	114.07	0.014824								0	0	0	0.264	1	29543	29543		1.8442	0	1		+		35420	17137	20816	20817	42907	42907					0.10690847091268552
QKIKLYEKT	9	Unmodified	_QKIKLYEKT_					0	0	0			REV__ENSG00000164197|ENST00000389100|RNF180	REV__ENSG00000164197|ENST00000389100|RNF180	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8426513671875	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.9	1	113.92	113.42	114.42	0.016708								0	0	0	0.264	1	29629	29629		1.8442	0	1		+		35421	17137	20816	20817	42908	42908					0.10690847091268552
QKIKLYEKT	9	Unmodified	_QKIKLYEKT_					0	0	0			REV__ENSG00000164197|ENST00000389100|RNF180	REV__ENSG00000164197|ENST00000389100|RNF180	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8428344726562	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.97	1	119	118.5	119.5	0.026253								0	0	0	0.264	1	30789	30789		1.8442	0	1		+		35422	17137	20816	20817	42909	42909					0.10690847091268552
QKIKLYEKT	9	Unmodified	_QKIKLYEKT_					0	0	0			REV__ENSG00000164197|ENST00000389100|RNF180	REV__ENSG00000164197|ENST00000389100|RNF180	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8425903320312	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.68	1	119.71	119.21	120.21	0.027756								0	0	0	0.264	1	30944	30944		1.8442	0	1		+		35423	17137	20816	20817	42910	42910					0.10690847091268552
QKILVDLRT	9	Unmodified	_QKILVDLRT_					0	0	0			REV__nc|ENSG00000138750|Q7Z3B4-2|NUP54	REV__nc|ENSG00000138750|Q7Z3B4-2|NUP54	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8192749023438	2	543.337498	1084.66044	0.84459	0.0004589	-0.4882	-0.00026526	0.35638	0.00019364	543.337263400887	32.423	0.46877	32.479	32.206	32.675	0.055309					35	16	3	0	0	0	0.2322	1	6225	6225		20.454	5.6154	1	353170	+		35424	23011	20817	20818	42911	42911					0.12149980294088891
QKIMFGKRRKI	11	Unmodified	_QKIMFGKRRKI_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000488719.1_1_22:30973035-30974997:-|nuORF	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.9591064453125	3	468.958858	1403.85474	0.094804	4.4459E-05	0.32212	0.00015106	0.41693	0.00019552	468.9590284234343	91.87	0.84971	91.961	91.808	92.658	0.090675					118	55	3	0	0	0	0.48486	1	24511	24511		0.094841	0	1	632230			35425	1519	20818	20819	42912	42912					0.16897033178361198
QKIQPLISPMK	11	Unmodified	_QKIQPLISPMK_					0	0	0			REV__nc|ENSG00000171502|Q17RW2-2|COL24A1	REV__nc|ENSG00000171502|Q17RW2-2|COL24A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8834838867188	2	641.881216	1281.74788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.89	1	101.91	101.41	102.41	0.016685								0	0	0	0.37501	1	27157	27157		2.7352	0	1		+		35426	17646	20819	20820	42913	42913					0.1182743817332721
QKISNIVFL	9	Unmodified	_QKISNIVFL_					0	0	0			REV__ENSG00000164463|ENST00000296953|CREBRF	REV__ENSG00000164463|ENST00000296953|CREBRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3030395507812	2	531.321317	1060.62808	0.6825	0.00036262	-0.46089	-0.00024488	0.2216	0.00011774	531.320929632147	55.764	0.25857	55.745	55.565	55.824	-0.019081					15	9	2	0	0	0	0.26612	1	13350	13350		13.906	1.6654	1	215680	+		35427	17159	20820	20821	42914	42914					0.10019192891104467
QKISNIVFL	9	Unmodified	_QKISNIVFL_					0	0	0			REV__ENSG00000164463|ENST00000296953|CREBRF	REV__ENSG00000164463|ENST00000296953|CREBRF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.321317	1060.62808	0.60476	0.00032132	-0.93453	-0.00049653	-0.32977	-0.00017521	531.320570261914	55.687	0.54559	55.687	55.274	55.82	0	-0.038416	-0.00034938	NaN	13.906	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177310	+		35428	17159	20820	20821							0.10019192891104467
QKKQEDGKE	9	Unmodified	_QKKQEDGKE_					0	0	0			REV__ENST00000367097.7_1_6:158733977-158734154:+|nuORF	REV__ENST00000367097.7_1_6:158733977-158734154:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2987670898438	2	545.280377	1088.5462	0.32204	0.0001756	0.86748	0.00047302	1.1895	0.00064862	545.2804504458427	25.516	0.62996	25.46	25.102	25.732	-0.055931					40	21	3	0	0	0	0.29176	1	4153	4153		10.074	0.6908	1	141250	+		35429	20304	20821	20822	42915	42915					0.005470457413366603
QKKVMVMTS	9	Unmodified	_QKKVMVMTS_					0	0	0		nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.81884765625	2	526.285563	1050.55657	0.15532	8.1744E-05	-0.34781	-0.00018305	-0.19249	-0.0001013	526.2853282628708	12.709	0.23973	12.61	12.46	12.7	-0.099291					11	7	2	0	0	0	0.25938	1	206	206		4.3292	0	1	23003			35430	5646	20822	20823	42916	42916					0.03331613870568617
QKLEAHRGE	9	Unmodified	_QKLEAHRGE_					0	0	0		nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;ENSG00000176438|ENST00000682763|SYNE3;ENST00000555759.1_1_14:95904955-95916441:-|nuORF	nc|ENSG00000176438|Q6ZMZ3-2|SYNE3	nc|ENSG00000176438|Q6ZMZ3-2|SYNE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.281494140625	2	534.283254	1066.55196	0.4155	0.00022199	-0.36498	-0.000195	0.050513	2.6988E-05	534.2824463840578	99.044	1.6295	99.037	98.573	100.2	-0.0069046					454	208	3	0	0	0	0.31417	1	26620	26620		6.7232	0	1	948530			35431	6929	20823	20824	42917	42917					0.021341890436588073
QKLEKQKKE	9	Unmodified	_QKLEKQKKE_					0	0	0		ENST00000539855.5_1_11:95532492-95564417:+|nuORF;nc|ENSG00000166037|Q86XR8-2|CEP57;nc|ENSG00000166037|Q86XR8-4|CEP57;nc|ENSG00000166037|Q86XR8-5|CEP57;ENSG00000166037|ENST00000325542|CEP57	ENST00000539855.5_1_11:95532492-95564417:+|nuORF	ENST00000539855.5_1_11:95532492-95564417:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.8443603515625	2	579.845687	1157.67682	0.20481	0.00011876	-1.7756	-0.0010296	-1.5708	-0.00091084	579.8443690280482	92.444	0.64767	92.444	92.249	92.897	0					66	49	2	0	0	0	0.33508	1	24596	24596		3.5965	0	1	150140			35432	6025	20824	20825	42918	42918					0.10429061460149569
QKLFRKVAK	9	Unmodified	_QKLFRKVAK_					0	0	0			REV__ENSG00000105989|ENST00000265441|WNT2	REV__ENSG00000105989|ENST00000265441|WNT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.7478637695312	2	559.36385	1116.71315	0.2384	0.00013335	-0.13273	-7.4246E-05	0.10567	5.9109E-05	559.3638672079602	30.853	0.75543	30.881	30.439	31.194	0.027946					63	26	4	0	0	0	0.26168	1	5609	5609		1.8442	0.19162	1	255900	+		35433	14497	20825	20826	42919	42919					0.1594598314754876
QKLKEAKEKD	10	Unmodified	_QKLKEAKEKD_					0	0	0			REV__ENSG00000172809|ENST00000311111|RPL38	REV__ENSG00000172809|ENST00000311111|RPL38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.848388671875	2	608.848427	1215.6823	0.44164	0.00026889	-1.1728	-0.00071403	-0.73111	-0.00044513	608.8479144520629	86.996	1.3066	86.99	86.132	87.439	-0.0056229					66	53	2	0	0	0	0.38773	1	22939	22939		5.7319	0	1	205800	+		35434	17733	20826	20827	42920	42920					0.08308740251982272
QKLKEAKEKD	10	Unmodified	_QKLKEAKEKD_					0	0	0			REV__ENSG00000172809|ENST00000311111|RPL38	REV__ENSG00000172809|ENST00000311111|RPL38	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	608.848427	1215.6823	0.57002	0.00034705	-0.97066	-0.00059098	-0.40064	-0.00024393	608.8479895863798	86.672	1.0159	86.672	86.2	87.216	0	-0.21226	0.00019175	NaN	5.7319	55	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207230	+		35435	17733	20826	20827							0.08308740251982272
QKLKEAKEKD	10	Unmodified	_QKLKEAKEKD_					0	0	0			REV__ENSG00000172809|ENST00000311111|RPL38	REV__ENSG00000172809|ENST00000311111|RPL38	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	608.848427	1215.6823	0.46647	0.00028401	-1.3288	-0.00080905	-0.86236	-0.00052505	608.8479401908654	86.903	0.47057	86.991	86.783	87.254	0.087097	0.10633	-0.00024439	NaN	5.7319	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156430	+		35436	17733	20826	20827							0.08308740251982272
QKLKEAKEKD	10	Unmodified	_QKLKEAKEKD_					0	0	0			REV__ENSG00000172809|ENST00000311111|RPL38	REV__ENSG00000172809|ENST00000311111|RPL38	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	608.848427	1215.6823	0.44164	0.00026889	-1.1728	-0.00071403	-0.73111	-0.00044513	608.8479144520629	86.996	1.3066	86.99	86.132	87.439	-0.0056229	0.10593	-5.4338E-05	NaN	5.7319	66	53	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205800	+		35437	17733	20826	20827							0.08308740251982272
QKLNTLQKL	9	Unmodified	_QKLNTLQKL_					0	0	0		ENST00000371513.9_1_1:53427298-53442386:+|nuORF	ENST00000371513.9_1_1:53427298-53442386:+|nuORF	ENST00000371513.9_1_1:53427298-53442386:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.8193969726562	2	543.337498	1084.66044	0.61463	0.00033395	-0.33482	-0.00018192	0.27981	0.00015203	543.3373235816451	32.429	0.48843	32.484	32.277	32.765	0.054371					39	17	3	0	0	0	0.24848	1	6224	6224		13.906	5.9959	1	372070			35438	9823	20827	20828	42921	42921					0.12149980294066154
QKLPPPPMHK	10	Unmodified	_QKLPPPPMHK_					0	0	0		ENST00000231461.9_1_5:100238801-100238969:-|nuORF	ENST00000231461.9_1_5:100238801-100238969:-|nuORF	ENST00000231461.9_1_5:100238801-100238969:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8342895507812	2	586.834069	1171.65358	0.28065	0.0001647	-0.0057981	-3.4025E-06	0.27485	0.00016129	586.8338136975857	82.166	2.7659	82.235	81.4	84.166	0.068993					315	113	4	0	0	0	0.40106	1	21940	21940		3.2813	3.2813	1	1932100			35439	8863	20828	20829	42922	42922					0.07462344141845279
QKLRIWRMKRK	11	Unmodified	_QKLRIWRMKRK_					0	0	0		ENST00000346991.9_1_15:40939257-40942558:+|nuORF	ENST00000346991.9_1_15:40939257-40942558:+|nuORF	ENST00000346991.9_1_15:40939257-40942558:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.8150024414062	3	514.98904	1541.94529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.258	1	12.161	11.661	12.661	-0.096607								0	0	0	0.38114	1	75	75		1.3296	0.11481	1				35440	9566	20829	20830	42923	42923					0.1959950222662883
QKLVFSGFRI	10	Unmodified	_QKLVFSGFRI_					0	0	0		ENST00000325147.13_1_11:204409-204613:-|nuORF	ENST00000325147.13_1_11:204409-204613:-|nuORF	ENST00000325147.13_1_11:204409-204613:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8560791015625	2	597.853316	1193.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.706	1	96.701	96.201	97.201	-0.0055466								0	0	0	0.37157	1	25869	25869		5.7319	0.50118	1				35441	9407	20830	20831	42924	42924					0.10297973048045606
QKLWFVLV	8	Unmodified	_QKLWFVLV_					0	0	0		ENST00000568171.1_1_16:47684769-47697703:+|nuORF	ENST00000568171.1_1_16:47684769-47697703:+|nuORF	ENST00000568171.1_1_16:47684769-47697703:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.3032836914062	2	516.81567	1031.61679	0.16335	8.4424E-05	-1.6656	-0.0008608	-1.5022	-0.00077638	516.8148207863098	27.084	0.65101	27.073	26.904	27.555	-0.01156					36	22	2	0	0	0	0.34337	1	4528	4528		5.2307	0	1	102520			35442	11997	20831	20832	42925	42925					0.10224415587617841
QKNPTVPLTQL	11	Unmodified	_QKNPTVPLTQL_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.87646484375	2	619.858795	1237.70304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.952	1	78.01	77.51	78.51	0.057457								0	0	0	0.31397	1	20136	20136		16.149	0	1		+		35443	15815	20832	20833	42926	42926					0.09369330631648154
QKPRPIILD	9	Unmodified	_QKPRPIILD_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.798583984375	2	540.332216	1078.64988	0.76621	0.00041401	-3.479	-0.0018798	-2.7127	-0.0014658	540.3308562173271	45.501	0.17178	45.561	45.448	45.619	0.059834					9	5	3	0	0	0	0.25066	1	10179	10179		7.2892	0.56607	1	89257			35444	2362	20833	20834	42927	42927					0.11369997639667417
QKPRPSKKRS	10	Unmodified	_QKPRPSKKRS_					0	0	0			REV__ENST00000588254.1_1_19:56000611-56002653:+|nuORF	REV__ENST00000588254.1_1_19:56000611-56002653:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8723754882812	2	606.370195	1210.72584	0.27499	0.00016675	0.84523	0.00051252	1.1202	0.00067927	606.3706928188358	113.08	0.5285	113.06	112.93	113.46	-0.017311					79	63	2	0	0	0	0.41815	1	29477	29477		0.40072	0.093686	1	37651	+		35445	18097	20834	20835	42928	42928					0.12890394539795125
QKPTLHIHE	9	Unmodified	_QKPTLHIHE_					0	0	0		nc|ENSG00000083828|Q9NXT0-3|ZNF586;ENST00000396150.4_1_19:58281140-58291161:+|nuORF;ENSG00000083828|ENST00000396154|ZNF586	nc|ENSG00000083828|Q9NXT0-3|ZNF586	nc|ENSG00000083828|Q9NXT0-3|ZNF586	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2833251953125	2	551.803823	1101.59309	0.28835	0.00015911	-0.73526	-0.00040572	-0.44691	-0.00024661	551.8034101017038	19.345	0.30903	19.289	19.114	19.423	-0.055693					14	10	2	0	0	0	0.26168	1	2153	2153		1.8442	0	1	29887			35446	1232	20835	20836	42929	42929					0.046359500831158584
QKQHLPVMP	9	Unmodified	_QKQHLPVMP_					0	0	0			REV__nc|ENSG00000127616|P51532-5|SMARCA4	REV__nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8185424804688	2	539.297319	1076.58008	0.36047	0.0001944	-0.090298	-4.8698E-05	0.27017	0.0001457	539.7992062554483	93.616	0.12397	93.616	93.572	93.696	0					17	11	2	0	0	0	0.25417	1	24940	24940		8.5933	0	1	56562	+		35447	15348	20836	20837	42930	42930					0.04485795699406481
QKQKDLKP	8	Unmodified	_QKQKDLKP_					0	0	0		DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.7956848144531	2	492.795466	983.57638	0.33072	0.00016298	-0.55876	-0.00027535	-0.22804	-0.00011238	492.7953397707573	19.879	2.5521	19.879	19.211	21.763	0					116	91	2	0	0	0	0.44734	2	2324	2277;2324		6.7232	0	1	242200			35448	260	20837	20838	42931;42932	42932					0.08393449197171776
QKQKGIKTT	9	Unmodified	_QKQKGIKTT_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.3143920898438	2	516.314023	1030.61349	0.32446	0.00016752	0.28251	0.00014586	0.60696	0.00031338	516.3141153441646	88.954	1.452	88.953	88.541	89.993	-0.00080872					230	86	4	0	0	0	0.34681	1	23735	23735		1.8442	1.8442	1	7062300			35449	6479	20838	20839	42933	42933					0.0994112074295117
QKQNLQQRQFL	11	Unmodified	_QKQNLQQRQFL_					0	0	0		ENST00000555988.1_2_14:75356010-75360059:+|nuORF	ENST00000555988.1_2_14:75356010-75360059:+|nuORF	ENST00000555988.1_2_14:75356010-75360059:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.8082275390625	3	477.600275	1429.779	0.34569	0.0001651	-0.23046	-0.00011007	0.11523	5.5034E-05	477.6002756955352	33.642	0.80023	33.642	33.393	34.193	0					50	28	3	0	0	0	0.33202	1	6552	6552		5.0475	0	1	298060			35450	11851	20839	20840	42934	42934					0.08129727531786557
QKQSHYKK	8	Unmodified	_QKQSHYKK_					0	0	0			REV__nc|ENSG00000164542|Q8NCT3-4|MATCAP2;REV__nc|ENSG00000164542|Q8NCT3|MATCAP2	REV__nc|ENSG00000164542|Q8NCT3-4|MATCAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.8032836914062	2	523.790715	1045.56688	0.40779	0.0002136	-1.3304	-0.00069687	-0.92264	-0.00048327	523.7898514839517	24.777	2.6044	24.777	23.11	25.714	0					115	89	2	0	0	0	0.43302	1	3985	3985		11.64	1.5664	1	103530	+		35451	23064;23065	20840	20841	42935	42935					0.04591680911653384
QKRDYKKEPK	10	Unmodified	_QKRDYKKEPK_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.54620361328125	3	440.585854	1318.73573	0.31575	0.00013911	-0.2936	-0.00012936	0.022147	9.7576E-06	440.58564214418783	26.653	0.53695	26.631	26.356	26.893	-0.022236					38	18	3	0	0	0	0.31994	1	4453	4453		5.4027	0.35519	1	135030			35452	4644	20841	20842	42936	42936					0.089115377545113
QKREKRGPLWR	11	Unmodified	_QKREKRGPLWR_					0	0	0		nc|ENSG00000168907|Q68DD2-2|PLA2G4F;PLA2G4F|p.A565Cfs*6|1|0.31|ENSG00000168907|chr15:42145662-42145663|-/A|frameshift_variant;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-2|PLA2G4F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8006286621094	3	485.288143	1452.8426	0.11551	5.6054E-05	2.0976	0.001018	2.2131	0.001074	485.28787878539276	41.33	0.26785	41.42	41.243	41.511	0.090248					12	9	2	0	0	0	0.33202	1	8897	8897		2.8433	0.93691	1	178910			35453	6310	20842	20843	42937	42937					0.1342913275952924
QKRFSLAFR	9	Unmodified	_QKRFSLAFR_					0	0	0		ENST00000512206.1_1_12:54428374-54428791:+|nuORF	ENST00000512206.1_1_12:54428374-54428791:+|nuORF	ENST00000512206.1_1_12:54428374-54428791:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.8040771484375	2	576.835457	1151.65636	0.081084	4.6772E-05	-1.4027	-0.00080915	-1.3217	-0.00076238	576.8345590943426	18.528	0.31375	18.528	18.332	18.646	0					13	10	2	0	0	0	0.26145	1	1977	1977		2.0598	0	1	31877			35454	11392	20843	20844	42938	42938					0.08659935591026624
QKRKGDPLV	9	Unmodified	_QKRKGDPLV_					0	0	0		ENSG00000214562|ENST00000381697|NUTM2D;ENSG00000228570|ENST00000429984|NUTM2E;ENSG00000188199|ENST00000429828|NUTM2B;ENSG00000184923|ENST00000381707|NUTM2A	ENSG00000214562|ENST00000381697|NUTM2D	ENSG00000214562|ENST00000381697|NUTM2D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2960205078125	2	520.81419	1039.61383	0.17779	9.2597E-05	0.0006703	3.491E-07	0.17846	9.2946E-05	520.8142214951712	38.544	0.44592	38.544	38.32	38.765	0					22	15	2	0	0	0	0.25938	1	7988	7988		4.3292	0.38484	1	151540			35455	7483	20844	20845	42939	42939					0.09560540462780409
QKRKGDPLV	9	Unmodified	_QKRKGDPLV_					0	0	0		ENSG00000214562|ENST00000381697|NUTM2D;ENSG00000228570|ENST00000429984|NUTM2E;ENSG00000188199|ENST00000429828|NUTM2B;ENSG00000184923|ENST00000381707|NUTM2A	ENSG00000214562|ENST00000381697|NUTM2D	ENSG00000214562|ENST00000381697|NUTM2D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	520.81419	1039.61383	0.43108	0.00022451	-0.033807	-1.7607E-05	0.39727	0.0002069	520.8141378968178	38.481	0.35686	38.572	38.373	38.73	0.090885	0.013759	-2.2634E-05	NaN	4.3292	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177970			35456	7483	20844	20845							0.09560540462780409
QKRLTIHGK	9	Unmodified	_QKRLTIHGK_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.27001953125	2	540.835457	1079.65636	0.2143	0.0001159	0.034177	1.8484E-05	0.24848	0.00013439	540.8346339674227	12.246	0.15264	12.15	12.053	12.206	-0.096607					8	5	2	0	0	0	0.26188	1	61	61		1.6526	0	1	20679			35457	669	20845	20846	42940	42940					0.11971935591031979
QKRNEKEFYMF	11	Unmodified	_QKRNEKEFYMF_					0	0	0			REV__ENST00000231004.4_1_5:121402295-121402388:-|nuORF	REV__ENST00000231004.4_1_5:121402295-121402388:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2492980957031	3	507.250254	1518.72893	0.4821	0.00024455	-0.65466	-0.00033208	-0.17256	-8.7533E-05	507.24981295281583	32.572	1.5333	32.627	31.836	33.369	0.055309					132	54	4	0	0	0	0.45422	2	6111	6111;6170		4.1166	4.1166	1	689290	+		35458	19462	20846	20847	42941;42942	42941					-0.009681431883791447
QKRNEKEFYMF	11	Unmodified	_QKRNEKEFYMF_					0	0	0			REV__ENST00000231004.4_1_5:121402295-121402388:-|nuORF	REV__ENST00000231004.4_1_5:121402295-121402388:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.5847473144531	3	507.250254	1518.72893	0.30882	0.00015665	-0.42769	-0.00021695	-0.11888	-6.03E-05	507.2499597798543	32.37	1.8036	32.425	31.761	33.565	0.054375					148	64	4	0	0	0	0.46554	1	6123	6123		2.6312	2.6312	1	599610	+		35459	19462	20846	20847	42943	42943					-0.009681431883791447
QKRSEDEVP	9	Unmodified	_QKRSEDEVP_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3272094726562	2	544.272552	1086.53055	1.1076	0.00060284	1.7524	0.00095376	2.86	0.0015566	544.2743612975817	33.832	0.64056	33.899	33.733	34.374	0.06636					29	22	2	0	0	0	0.24311	1	6731	6731		16.942	7.5949	1	105540	+		35460	18653	20847	20848	42944	42944					-0.009252407757003311
QKRSEDEVP	9	Unmodified	_QKRSEDEVP_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3279418945312	2	544.272552	1086.53055	0.46686	0.0002541	2.6408	0.0014373	3.1077	0.0016914	544.2742909336004	33.903	0.40989	33.97	33.799	34.209	0.066704					16	14	2	0	0	0	0.24913	1	6661	6661		12.532	1.7076	1	106770	+		35461	18653	20847	20848	42945	42945					-0.009252407757003311
QKRSFLPETI	10	Unmodified	_QKRSFLPETI_					0	0	0			REV__LTR46-int_dup15|chr6:25836289-25836601:-|1.146732329958959|0.031853035304567|5.17|503.0|8|3|sense	REV__LTR46-int_dup15|chr6:25836289-25836601:-|1.146732329958959|0.031853035304567|5.17|503.0|8|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.91925048828125	3	406.89955	1217.67682	-0.25718	-0.00010465	3.1948	0.0013	2.9376	0.0011953	406.90089340669334	29.731	0.58364	29.744	29.421	30.005	0.013475					24	19	2	0	0	0	0.31745	1	5288	5288		5.0475	3.1411	1	36608	+		35462	13213	20848	20849	42946	42946					0.0766906146020574
QKRSFLPETI	10	Unmodified	_QKRSFLPETI_					0	0	0			REV__LTR46-int_dup15|chr6:25836289-25836601:-|1.146732329958959|0.031853035304567|5.17|503.0|8|3|sense	REV__LTR46-int_dup15|chr6:25836289-25836601:-|1.146732329958959|0.031853035304567|5.17|503.0|8|3|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	406.89955	1217.67682	0.0061614	2.5071E-06	4.0582	0.0016513	4.0643	0.0016538	406.90098469572933	29.769	0.47568	29.781	29.5	29.976	0.012266	0.018463	0.00041584	NaN	5.0475	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30781	+		35463	13213	20848	20849							0.0766906146020574
QKRSSAVKA	9	Unmodified	_QKRSSAVKA_					0	0	0			REV__nc|ENSG00000101639|Q8TEP8-2|CEP192	REV__nc|ENSG00000101639|Q8TEP8-2|CEP192	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7908020019531	2	487.790715	973.566878	0.37224	0.00018158	0.20913	0.00010201	0.58138	0.00028359	487.79069538336256	74.179	3.0113	74.148	73.152	76.163	-0.030655					175	109	2	0	0	0	0.31417	1	18821	18821		6.7232	6.7232	1	5822500	+		35464	14281	20849	20850	42947	42947					0.07903680911658739
QKRVGMLMIH	10	Unmodified	_QKRVGMLMIH_					0	0	0			REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8394165039062	2	606.838828	1211.6631	0.23149	0.00014048	-0.27866	-0.0001691	-0.047176	-2.8628E-05	606.8384140071469	22.986	0.58032	22.941	22.616	23.197	-0.044867					33	20	2	0	0	0	0.40992	1	3380	3380		1.6526	0	1	62821	+		35465	13611	20850	20851	42948	42948					0.06573789155754639
QKRVGMLMIH	10	Unmodified	_QKRVGMLMIH_					0	0	0			REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	606.838828	1211.6631	0.21077	0.0001279	-0.5933	-0.00036004	-0.38253	-0.00023214	606.8383091048873	22.91	0.39823	22.91	22.649	23.047	0	-0.032096	-9.6639E-05	NaN	1.6526	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54855	+		35466	13611	20850	20851							0.06573789155754639
QKRVGMLMIH	10	Unmodified	_QKRVGMLMIH_					0	0	0			REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	606.838828	1211.6631	0.25633	0.00015555	-0.74501	-0.0004521	-0.48868	-0.00029655	606.8380256244541	23.064	0.53609	22.976	22.628	23.165	-0.087608	0.033693	-0.00028077	NaN	1.6526	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46495	+		35467	13611	20850	20851							0.06573789155754639
QKRVGMLMIH	10	Unmodified	_QKRVGMLMIH_					0	0	0			REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	606.838828	1211.6631	0.23149	0.00014048	-0.27866	-0.0001691	-0.047176	-2.8628E-05	606.8384140071469	22.986	0.58032	22.941	22.616	23.197	-0.044867	-0.001597	0.00028523	NaN	1.6526	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62821	+		35468	13611	20850	20851							0.06573789155754639
QKRWWNAYILF	11	Unmodified	_QKRWWNAYILF_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.302734375	3	508.941861	1523.80375	0.49662	0.00025275	1.1055	0.00056265	1.6021	0.0008154	508.94235922451315	36.773	0.47369	36.773	36.511	36.985	0					29	16	3	0	0	0	0.33347	1	7557	7557		0.45452	0.45452	1	164560			35469	3159;2560	20851	20852	42949	42949					0.06280407405165533
QKRYVFVIR	9	Unmodified	_QKRYVFVIR_					0	0	0		ENST00000507823.5_1_5:174919260-174949462:+|nuORF	ENST00000507823.5_1_5:174919260-174949462:+|nuORF	ENST00000507823.5_1_5:174919260-174949462:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.5945739746094	3	403.580264	1207.71896	-0.45923	-0.00018534	3.8968	0.0015727	3.4376	0.0013873	403.58178871030265	12.486	0.16946	12.39	12.324	12.493	-0.096607					8	5	2	0	0	0	0.34085	1	156	156		2.7352	0.82882	1	25288			35470	11341	20852	20853	42950	42950					0.12341081659201336
QKSKPGFFE	9	Unmodified	_QKSKPGFFE_					0	0	0			REV__ENST00000329623.11_2_21:43339028-43346750:-|nuORF	REV__ENST00000329623.11_2_21:43339028-43346750:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2919311523438	2	534.279649	1066.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.046	1	90.046	89.546	90.546	0								0	0	0	0.22377	1	23854	23854		14.838	1.3304	1		+		35471	20031	20853	20854	42951	42951					0.014134564432424668
QKSKRKGHE	9	Unmodified	_QKSKRKGHE_					0	0	0		ENST00000506227.2_1_4:83501272-83501506:-|nuORF;ENST00000404534.1_1_6:138026562-138026850:-|nuORF;ENST00000510501.1_1_8:59337214-59337583:-|nuORF;ENSG00000179295|ENST00000351677|PTPN11;nc|ENSG00000179295|Q06124-1|PTPN11	ENST00000506227.2_1_4:83501272-83501506:-|nuORF	ENST00000506227.2_1_4:83501272-83501506:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7718505859375	2	549.312346	1096.61014	0.077178	4.2395E-05	-0.37068	-0.00020362	-0.2935	-0.00016122	549.3122047980887	13.688	0.33516	13.688	13.537	13.872	0					30	11	4	0	0	0	0.26099	1	522	522		2.9952	1.151	1	133310			35472	7114	20854	20855	42952	42952					0.06569870688940682
QKSLGLWT	8	Unmodified	_QKSLGLWT_					0	0	0		ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7796936035156	2	466.763635	931.512717	-0.33365	-0.00015573	-3.6764	-0.001716	-4.01	-0.0018717	466.76181055439724	13.815	0.24156	13.711	13.603	13.845	-0.10466					12	8	3	0	0	0	0.34313	1	553	553		6.7232	0.51738	1	22566			35473	6008	20855	20856	42953	42953					0.04422088760088627
QKSLRLEWET	10	Unmodified	_QKSLRLEWET_					0	0	0		nc|ENSG00000164675|Q8NA54-2|IQUB;ENSG00000164675|ENST00000324698|IQUB	nc|ENSG00000164675|Q8NA54-2|IQUB	nc|ENSG00000164675|Q8NA54-2|IQUB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	645.3328857421875	2	645.346052	1288.67755	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.27	1	98.263	97.763	98.763	-0.0068283								0	0	0	0.37044	1	26324	26324		6.2058	0	1				35474	5864	20856	20857	42954	42954					0.04475856109252163
QKSRPGNK	8	Unmodified	_QKSRPGNK_					0	0	0		ENSG00000137440|ENST00000382333|FGFBP1	ENSG00000137440|ENST00000382333|FGFBP1	ENSG00000137440|ENST00000382333|FGFBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7747802734375	2	457.761958	913.509363	-0.22587	-0.0001034	-0.10595	-4.8499E-05	-0.33182	-0.0001519	457.7617949139174	13.423	0.41952	13.324	13.189	13.608	-0.099291					29	14	3	0	0	0	0.43043	1	490	490		12.532	3.9383	1	278380			35475	4046	20857	20858	42955	42955					0.049148387060995447
QKTPRKITP	9	Unmodified	_QKTPRKITP_					0	0	0		ENSG00000177673|ENST00000313965|TEX44	ENSG00000177673|ENST00000313965|TEX44	ENSG00000177673|ENST00000313965|TEX44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7719116210938	2	534.82984	1067.64513	0.40675	0.00021754	-0.27731	-0.00014831	0.12944	6.9228E-05	534.8297890971123	43.643	0.86919	43.72	43.155	44.024	0.077515					78	31	4	0	0	0	0.22674	1	9623	9623		17.113	2.2746	1	511410			35476	7007	20858	20859	42956	42956					0.11401113496890503
QKVEREWSERR	11	Unmodified	_QKVEREWSERR_					0	0	0			REV__ENSG00000147684|ENST00000276689|NDUFB9	REV__ENSG00000147684|ENST00000276689|NDUFB9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.281494140625	3	501.598934	1501.77497	0.65503	0.00032856	1.5345	0.00076972	2.1896	0.0010983	501.60002680818565	36.822	0.88699	36.915	36.661	37.548	0.093018					81	32	4	0	0	0	0.3325	1	7628	7628		4.1166	2.1891	1	1175200	+		35477	16402	20859	20860	42957	42957					0.0441563803808549
QKYWVMLV	8	Unmodified	_QKYWVMLV_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2694091796875	2	533.791338	1065.56812	0.32194	0.00017185	-0.69538	-0.00037119	-0.37344	-0.00019934	533.7908665396751	16.05	0.67085	16.05	15.706	16.377	0					33	23	2	0	0	0	0.34337	1	1133	1133		5.2307	1.2863	1	38984	+		35478	15247	20860	20861	42958	42958					0.03796178956190488
QKYWVMLV	8	Unmodified	_QKYWVMLV_					0	0	0			REV__ENSG00000124721|ENST00000327475|DNAH8	REV__ENSG00000124721|ENST00000327475|DNAH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2689208984375	2	533.791338	1065.56812	0.13361	7.1322E-05	-0.76069	-0.00040605	-0.62708	-0.00033473	533.7910407290419	16.383	0.63976	16.268	15.781	16.421	-0.11434					34	21	2	0	0	0	0.34337	1	1169	1169		5.2307	0	1	36445	+		35479	15247	20860	20861	42959	42959					0.03796178956190488
QLAGSLGKPK	10	Unmodified	_QLAGSLGKPK_					0	0	0			REV__nc|ENSG00000196678|A8K979-3|ERI2	REV__nc|ENSG00000196678|A8K979-3|ERI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8187561035156	2	499.803291	997.59203	0.32361	0.00016174	-0.21872	-0.00010932	0.1049	5.2427E-05	499.80321039039865	42.296	0.79202	42.382	42.211	43.003	0.085197					73	28	4	0	0	0	0.26265	1	9359	9359		24.991	0.97039	1	575690	+		35480	18676	20861	20862	42960	42960					0.09313735714238192
QLAQCFEQII	10	Unmodified	_QLAQCFEQII_					0	0	0			REV__ENSG00000184575|ENST00000332707|XPOT	REV__ENSG00000184575|ENST00000332707|XPOT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.80615234375	2	596.805174	1191.59579	0.48885	0.00029175	0.45741	0.00027298	0.94626	0.00056473	596.8053808986033	70.842	0.67289	70.842	70.484	71.157	0					62	23	4	0	0	0	0.3001	1	17944	17944		20.415	1.1575	1	697340	+		35481	18323	20862	20863	42961	42961					0.007660374257739022
QLAQCFEQII	10	Unmodified	_QLAQCFEQII_					0	0	0			REV__ENSG00000184575|ENST00000332707|XPOT	REV__ENSG00000184575|ENST00000332707|XPOT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.8056030273438	2	596.805174	1191.59579	0.50172	0.00029943	0.12511	7.4664E-05	0.62682	0.00037409	596.8054418773442	70.776	0.6244	70.837	70.493	71.117	0.060783					55	22	4	0	0	0	0.3001	1	17969	17969		20.415	3.3016	1	728920	+		35482	18323	20862	20863	42962	42962					0.007660374257739022
QLAQCFEQII	10	Unmodified	_QLAQCFEQII_					0	0	0			REV__ENSG00000184575|ENST00000332707|XPOT	REV__ENSG00000184575|ENST00000332707|XPOT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.8052978515625	2	596.805174	1191.59579	0.49101	0.00029304	0.35058	0.00020923	0.8416	0.00050227	596.8055189726458	70.954	0.69444	70.929	70.493	71.188	-0.024872					53	24	4	0	0	0	0.19885	2	17990	17941;17990		32.786	5.1569	1	674520	+		35483	18323	20862	20863	42963;42964	42964					0.007660374257739022
QLARDERH	8	Unmodified	_QLARDERH_					0	0	0		ENST00000358220.5_1_10:1176693-1176822:+|nuORF	ENST00000358220.5_1_10:1176693-1176822:+|nuORF	ENST00000358220.5_1_10:1176693-1176822:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.3326416015625	2	512.767771	1023.52099	0.21903	0.00011231	-3.2043	-0.0016431	-2.9853	-0.0015307	512.7658015118654	33.055	0.16707	33.055	32.924	33.091	0					7	5	2	0	0	0	0.34131	1	6373	6373		12.532	0.89125	1	51551			35484	9646	20863	20864	42965	42965					0.010170357294214227
QLARKAPL	8	Unmodified	_QLARKAPL_					0	0	0			REV__ENSG00000153404|ENST00000637938|PLEKHG4B	REV__ENSG00000153404|ENST00000637938|PLEKHG4B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.7942810058594	2	448.787444	895.560336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.231	1	77.231	76.731	77.731	0								0	0	0	0.35251	1	19925	19925		13.508	0	1		+		35485	16627	20864	20865	42966	42966					0.10837787750938332
QLATSCYH	8	Unmodified	_QLATSCYH_					0	0	0			REV__AluJo_dup67865|chr18:12032514-12032819:+|1.2083597169939146|0.4533149989165787|1.41|542.0|3|1|sense	REV__AluJo_dup67865|chr18:12032514-12032819:+|1.2083597169939146|0.4533149989165787|1.41|542.0|3|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.7716064453125	2	461.708002	921.401452	0.26392	0.00012185	-0.38236	-0.00017654	-0.11845	-5.4688E-05	461.70800859303097	70.973	1.1794	70.948	70.275	71.454	-0.024872					65	42	2	0	0	0	0.34218	1	17801	17801		9.3474	0.75416	1	599210	+		35486	13100	20865	20866	42967	42967					-0.062392939395067515
QLCHPFSP	8	Unmodified	_QLCHPFSP_					0	0	0			REV__ENSG00000178175|ENST00000318442|ZNF366	REV__ENSG00000178175|ENST00000318442|ZNF366	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.72125244140625	2	464.720913	927.427273	0.19683	9.1473E-05	0.90004	0.00041827	1.0969	0.00050974	464.721286805721	80.995	0.38843	80.968	80.814	81.202	-0.026825					20	16	2	0	0	0	0.45942	1	21106	21106		2.5775	0	1	129780	+		35487	18022	20866	20867	42968	42968					-0.039343996972206696
QLCWRQPPGK	10	Unmodified	_QLCWRQPPGK_					0	0	0			REV__nc|ENSG831|P61583|ERVK-5_np9	REV__nc|ENSG831|P61583|ERVK-5_np9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5526123046875	3	404.881725	1211.62335	-0.21033	-8.5158E-05	-0.13984	-5.6619E-05	-0.35017	-0.00014178	404.8814989657172	23.021	1.0983	22.976	22.069	23.167	-0.044867					55	38	2	0	0	0	0.3179	1	3119	3119		5.7834	0.38072	1	144210	+		35488	23264	20867	20868	42969	42969					0.025999854766496355
QLDEETQY	8	Unmodified	_QLDEETQY_					0	0	0		nc|ENSG00000134758|Q8WVD3-2|RNF138;ENSG00000134758|ENST00000261593|RNF138	nc|ENSG00000134758|Q8WVD3-2|RNF138	nc|ENSG00000134758|Q8WVD3-2|RNF138	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7048950195312	2	513.224736	1024.43492	0.1446	7.4214E-05	0.42983	0.0002206	0.57443	0.00029481	513.225174459266	69.464	1.0631	69.53	69.038	70.101	0.066048					95	37	4	0	0	0	0.33993	1	17718	17718		11.64	0	1	511940			35489	3806	20868	20869	42970	42970					-0.07632013686588834
QLDRNMERL	9	Unmodified	_QLDRNMERL_					0	0	0			REV__nc|ENSG00000116852|O75037-3|KIF21B	REV__nc|ENSG00000116852|O75037-3|KIF21B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.8016967773438	2	587.803497	1173.59244	0.32704	0.00019224	-1.6669	-0.0009798	-1.3398	-0.00078757	587.8026187991563	19.461	0.98225	19.406	19.08	20.062	-0.055693					70	34	3	0	0	0	0.34923	1	2376	2376		1.4819	0.28856	1	80217	+		35490	14945	20869	20870	42971	42971					0.012587873717848197
QLDRTKIP	8	Unmodified	_QLDRTKIP_					0	0	0		ENST00000402357.5_1_22:49145671-49146484:+|nuORF	ENST00000402357.5_1_22:49145671-49146484:+|nuORF	ENST00000402357.5_1_22:49145671-49146484:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2603759765625	2	485.787641	969.56073	0.28493	0.00013842	-1.4394	-0.00069925	-1.1545	-0.00056083	485.7865323684141	29.543	0.35873	29.555	29.361	29.72	0.012266					22	11	3	0	0	0	0.33245	1	5271	5271		19.439	0	1	68512			35491	10193	20870	20871	42972	42972					0.07473162680128098
QLEEKSIQGAP	11	Unmodified	_QLEEKSIQGAP_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3305053710938	2	600.31696	1198.61937	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.645	1	45.645	45.145	46.145	0								0	0	0	0.32888	1	10219	10219		12.873	0.63195	1		+		35492	17772	20871	20872	42973	42973					0.028001744639368553
QLEGRVVRRV	10	Unmodified	_QLEGRVVRRV_					0	0	0		nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3699340820312	2	606.370195	1210.72584	0.45985	0.00027884	-0.18945	-0.00011488	0.2704	0.00016396	606.3699776312902	86.955	2.1455	86.949	86.188	88.334	-0.0056229					252	99	4	0	0	0	0.4155	1	23207	23207		1.4819	0	1	1359200			35493	12560	20872	20873	42974	42974					0.12890394539772387
QLEKAKQK	8	Unmodified	_QLEKAKQK_					0	0	0			REV__ENSG00000141384|ENST00000269142|TAF4B	REV__ENSG00000141384|ENST00000269142|TAF4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2510070800781	2	486.795466	971.57638	-0.004889	-2.3799E-06	-0.15579	-7.5838E-05	-0.16068	-7.8218E-05	486.7953659626051	25.459	0.23261	25.403	25.281	25.514	-0.055931					10	7	2	0	0	0	0.34437	1	4036	4036		0.69038	0	1	34677	+		35494	16072	20873	20874	42975	42975					0.08945449197176458
QLEKTELK	8	Unmodified	_QLEKTELK_					0	0	0		nc|ENSG00000276644|Q9UI36-4|DACH1;nc|ENSG00000276644|Q9UI36-3|DACH1;ENSG00000276644|ENST00000613252|DACH1;nc|ENSG00000276644|Q9UI36|DACH1	nc|ENSG00000276644|Q9UI36-4|DACH1	nc|ENSG00000276644|Q9UI36-4|DACH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7998046875	2	494.787307	987.560061	0.37184	0.00018398	-0.19746	-9.7703E-05	0.17437	8.6276E-05	494.78725972647885	24.631	0.41986	24.631	24.423	24.843	0					24	13	3	0	0	0	0.4396	1	3848	3848		9.3831	0	1	45152			35495	8728	20874	20875	42976	42976					0.065783232404101
QLELFYCL	8	Unmodified	_QLELFYCL_					0	0	0		nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3;nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF	nc|ENSG00000162711|Q96P20-2|NLRP3	nc|ENSG00000162711|Q96P20-2|NLRP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7592163085938	2	514.759704	1027.50485	-0.0077768	-4.0032E-06	-0.041497	-2.1361E-05	-0.049274	-2.5364E-05	514.7598586877834	13.504	0.71909	13.504	13.336	14.055	0					81	24	5	0	0	0	0.43043	1	565	565		12.532	1.7076	1	3506500			35496	5605	20875	20876	42977	42977					-0.007798065516908537
QLEPSPIL	8	Unmodified	_QLEPSPIL_					0	0	0			REV__nc|ENSG00000147044|O14936-3|CASK	REV__nc|ENSG00000147044|O14936-3|CASK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.28411865234375	2	448.758018	895.501483	0.205	9.1995E-05	-0.31738	-0.00014243	-0.11238	-5.0432E-05	448.7579838496868	75.385	1.0488	75.438	74.998	76.047	0.052361					86	38	3	0	0	0	0.18139	1	19353	19353		54.774	8.7526	1	957390	+		35497	16368	20876	20877	42978	42978					0.04955266665945146
QLERKRERE	9	Unmodified	_QLERKRERE_					0	0	0		nc|ENSG00000248333|P21127|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000008128|Q9UQ88-9|CDK11A;ENST00000598846.1_1_1:1636463-1654047:-|nuORF	nc|ENSG00000248333|P21127|CDK11B	nc|ENSG00000248333|P21127|CDK11B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3475341796875	2	622.346917	1242.67928	0.49695	0.00030928	0.38137	0.00023734	0.87832	0.00054662	622.3470765266429	85.83	2.7365	85.83	84.994	87.731	0					216	110	3	0	0	0	0.33508	1	22380	22380		3.5965	0	1	1062300			35498	388	20877	20878	42979	42979					0.06764909917842488
QLEWSLQF	8	Unmodified	_QLEWSLQF_					0	0	0			REV__nc|ENSG00000133107|Q9UBN4-7|TRPC4	REV__nc|ENSG00000133107|Q9UBN4-7|TRPC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3612060546875	2	525.766374	1049.5182	0.52497	0.00027601	1.5544	0.00081723	2.0793	0.0010932	525.7671649677746	30.069	0.6237	30.097	29.701	30.324	0.027946					33	21	2	0	0	0	0.34131	1	5361	5361		12.532	0	1	156290	+		35499	15607	20878	20879	42980	42980					-0.004582324480907118
QLEYEMWE	8	Unmodified	_QLEYEMWE_					0	0	0			REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	REV__nc|ENSG00000146555|Q7Z5N4-3|SDK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.8206787109375	2	564.239332	1126.46411	0.47358	0.00026721	-0.0039275	-2.216E-06	0.46965	0.000265	564.2392527068087	79.407	0.84637	79.468	79.042	79.888	0.061417					80	35	3	0	0	0	0.34294	1	20697	20697		3.9444	0	1	318390	+		35500	16352	20879	20880	42981	42981					-0.0940619266198155
QLEYQQLED	9	Unmodified	_QLEYQQLED_					0	0	0		nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;EPB41L3|p.K943Nfs*9|1|0.39|ENSG00000082397|chr18:5397070-5397070|T/-|frameshift_variant;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3	nc|ENSG00000082397|Q9Y2J2-4|EPB41L3	nc|ENSG00000082397|Q9Y2J2-4|EPB41L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3057861328125	2	583.272218	1164.52988	0.42727	0.00024922	1.9072	0.0011124	2.3345	0.0013616	583.2734209096211	45.219	0.63934	45.287	44.817	45.456	0.068569					38	22	3	0	0	0	0.24993	1	10013	10013		13.042	1.4022	1	209030			35501	1200	20880	20881	42982	42982					-0.0458008021544174
QLFETSSLF	9	Unmodified	_QLFETSSLF_					0	0	0			REV__ENSG00000086200|ENST00000325324|IPO11	REV__ENSG00000086200|ENST00000325324|IPO11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2805786132812	2	536.27149	1070.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.594	1	76.647	76.147	77.147	0.053413								0	0	0	0.12746	1	19724	19724		39.95	13.066	1		+		35502	13974	20881	20882	42983	42983					-0.004016695135305781
QLFFQYRTI	9	Unmodified	_QLFFQYRTI_					0	0	0			REV__ENST00000305368.8_1_5:111600591-111754802:-|nuORF	REV__ENST00000305368.8_1_5:111600591-111754802:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.88037109375	3	405.888874	1214.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.41	1	24.41	23.91	24.91	0								0	0	0	0.24446	1	3742	3742		8.1555	2.7528	1		+		35503	15422	20882	20883	42984	42984					0.04605693777034503
QLFHRFNEK	9	Unmodified	_QLFHRFNEK_					0	0	0			REV__ENST00000553480.1_1_14:45329665-45330565:-|nuORF	REV__ENST00000553480.1_1_14:45329665-45330565:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.8840026855469	3	406.884123	1217.63054	0.037463	1.5243E-05	-0.24519	-9.9765E-05	-0.20773	-8.4522E-05	406.88391478626033	20.731	1.2584	20.731	20.395	21.654	0					106	43	4	0	0	0	0.26807	2	2589	2589;2638		13.615	2.5496	1	537420	+		35504	22225	20883	20884	42985;42986	42985					0.030430413487465557
QLFHRFNEK	9	Unmodified	_QLFHRFNEK_					0	0	0			REV__ENST00000553480.1_1_14:45329665-45330565:-|nuORF	REV__ENST00000553480.1_1_14:45329665-45330565:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.1952819824219	3	406.884123	1217.63054	0.037463	1.5243E-05	-0.24519	-9.9765E-05	-0.20773	-8.4522E-05	406.88391478626033	20.731	1.2584	20.731	20.395	21.654	0					106	43	4	0	0	0	0.26213	1	2563	2563		1.7423	0	1	537420	+		35505	22225	20883	20884	42987	42987					0.030430413487465557
QLFHRFNEK	9	Unmodified	_QLFHRFNEK_					0	0	0			REV__ENST00000553480.1_1_14:45329665-45330565:-|nuORF	REV__ENST00000553480.1_1_14:45329665-45330565:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.88427734375	3	406.884123	1217.63054	0.24873	0.0001012	-0.47406	-0.00019289	-0.22533	-9.1683E-05	406.88388277831797	20.909	1.2682	20.799	20.495	21.763	-0.11003					131	44	5	0	0	0	0.31772	1	2656	2656		6.1918	0.32371	1	737020	+		35506	22225	20883	20884	42988	42988					0.030430413487465557
QLFHRFNEK	9	Unmodified	_QLFHRFNEK_					0	0	0			REV__ENST00000553480.1_1_14:45329665-45330565:-|nuORF	REV__ENST00000553480.1_1_14:45329665-45330565:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	406.884123	1217.63054	0.24873	0.0001012	-0.47406	-0.00019289	-0.22533	-9.1683E-05	406.88388277831797	20.909	1.2682	20.799	20.495	21.763	-0.11003	0.03999	-6.8288E-05	NaN	13.615	131	44	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	737020	+		35507	22225	20883	20884							0.030430413487465557
QLFVRCRW	8	Unmodified	_QLFVRCRW_					0	0	0			REV__nc|ENSG00000186416|O15226|NKRF	REV__nc|ENSG00000186416|O15226|NKRF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3118286132812	2	554.297653	1106.58075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.968	1	42.063	41.563	42.563	0.095463								0	0	0	0.32762	1	9088	9088		24.674	4.2203	1		+		35508	18446	20884	20885	42989	42989					0.03172635139094382
QLGAPARVVL	10	Unmodified	_QLGAPARVVL_					0	0	0			REV__ENST00000497173.5_3_3:134515022-134515208:+|nuORF	REV__ENST00000497173.5_3_3:134515022-134515208:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2716674804688	2	512.319109	1022.62366	0.27014	0.0001384	0.37785	0.00019358	0.64799	0.00033198	512.3192370135632	43.975	0.49579	44.052	43.762	44.258	0.077518					28	18	2	0	0	0	0.31629	1	9645	9645		10.074	0.6908	1	410030	+		35509	21679	20885	20886	42990	42990					0.11325728468182206
QLGKQLISI	9	Unmodified	_QLGKQLISI_					0	0	0			REV__nc|ENSG00000101849|O60907-2|TBL1X	REV__nc|ENSG00000101849|O60907-2|TBL1X	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.8237609863281	2	500.313492	998.612431	0.38004	0.00019014	0.38101	0.00019063	0.76105	0.00038076	500.3135839206313	65.522	0.54224	65.51	65.257	65.799	-0.011337					30	19	2	0	0	0	0.1939	1	16308	16308		30.637	0	1	503370	+		35510	14290	20886	20887	42991	42991					0.1130690637405678
QLGLQARAT	9	Unmodified	_QLGLQARAT_					0	0	0		ENST00000279804.2_1_16:30913893-30914157:+|nuORF	ENST00000279804.2_1_16:30913893-30914157:+|nuORF	ENST00000279804.2_1_16:30913893-30914157:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2775573730469	2	479.277441	956.540328	0.35474	0.00017002	-0.084567	-4.0531E-05	0.27017	0.00012949	479.27727394120393	86.784	2.8902	86.784	84.92	87.81	0					205	118	3	0	0	0	0.31763	1	22833	22833		6.2058	0.9089	1	558360			35511	9111	20887	20888	42992	42992					0.06031992020314192
QLGLQARAT	9	Unmodified	_QLGLQARAT_					0	0	0		ENST00000279804.2_1_16:30913893-30914157:+|nuORF	ENST00000279804.2_1_16:30913893-30914157:+|nuORF	ENST00000279804.2_1_16:30913893-30914157:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.277441	956.540328	0.40291	0.00019311	-0.32342	-0.00015501	0.079487	3.8097E-05	479.2771460947946	86.729	1.3488	86.724	86.342	87.691	-0.0056229	-0.026673	-0.00012036	NaN	6.2058	125	59	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	510620			35512	9111	20887	20888							0.06031992020314192
QLGNEQITF	9	Unmodified	_QLGNEQITF_					0	0	0			REV__ENSG00000164199|ENST00000405460|ADGRV1	REV__ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7643432617188	2	525.266739	1048.51892	0.50002	0.00026264	-1.1034	-0.00057956	-0.60334	-0.00031692	525.2662163336383	53.939	0.81141	53.996	53.535	54.346	0.056259					54	30	3	0	0	0	0.24848	1	12790	12790		13.906	5.1606	1	556670	+		35513	17138	20888	20889	42993	42993					-0.0033943779906167038
QLGPSRILA	9	Unmodified	_QLGPSRILA_					0	0	0		nc|ENSG00000168556|Q9H160-2|ING2	nc|ENSG00000168556|Q9H160-2|ING2	nc|ENSG00000168556|Q9H160-2|ING2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.2801208496094	2	477.790184	953.565815	-0.078636	-3.7571E-05	0.35082	0.00016762	0.27218	0.00013005	477.7902056010071	23.011	0.48751	23.011	22.763	23.25	0					25	16	2	0	0	0	0.26068	1	3275	3275		3.2813	0	1	44743			35514	12832	20889	20890	42994	42994					0.08717466542759666
QLGSIMKKAE	10	Unmodified	_QLGSIMKKAE_					0	0	0			REV__nc|ENSG00000150764|Q155Q3-2|DIXDC1	REV__nc|ENSG00000150764|Q155Q3-2|DIXDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8300170898438	2	552.807716	1103.60088	0.60183	0.00033269	0.43962	0.00024303	1.0415	0.00057572	552.8078786704418	77.214	0.78117	77.269	77.06	77.841	0.055412					49	27	3	0	0	0	0.27248	1	19959	19959		23.79	9.2081	1	341230	+		35515	16509	20890	20891	42995	42995					0.05322341288388088
QLGSVPGKKEF	11	Unmodified	_QLGSVPGKKEF_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7333984375	2	595.332413	1188.65027	0.33114	0.00019714	-0.56775	-0.000338	-0.23661	-0.00014086	595.3320891679558	76.177	1.2278	76.231	75.89	77.118	0.053413					74	43	2	0	0	0	0.33037	1	19819	19819		4.5289	0.93237	1	4318500	+		35516	16149	20891	20892	42996	42996					0.06349372568843137
QLGVYASPYL	10	Unmodified	_QLGVYASPYL_					0	0	0			REV__TMEM229A|p.H129Y|1|0.15|ENSG00000234224|chr7:124032619-124032619|G/A|missense_variant	REV__TMEM229A|p.H129Y|1|0.15|ENSG00000234224|chr7:124032619-124032619|G/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7967529296875	2	555.795132	1109.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.23	1	119.2	118.7	119.7	-0.024147								0	0	0	0.38166	1	30783	30783		1.4819	0.41044	1		+		35517	23340	20892	20893	42997	42997					0.025306097574684827
QLHEEVKVW	9	Unmodified	_QLHEEVKVW_					0	0	0		ENSG00000171988|ENST00000399262|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	ENSG00000171988|ENST00000399262|JMJD1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2882080078125	2	584.31148	1166.60841	0.41536	0.0002427	-2.3032	-0.0013458	-1.8878	-0.0011031	584.3096828246728	57.502	0.41238	57.502	57.165	57.578	0					43	14	5	0	0	0	0.25066	1	13873	13873		7.2892	0	1	500930			35518	6596	20893	20894	42998	42998					0.031768168803409935
QLHGKGQLQ	9	Unmodified	_QLHGKGQLQ_					0	0	0		nc|ENSG00000160055|Q8WY98|TMEM234	nc|ENSG00000160055|Q8WY98|TMEM234	nc|ENSG00000160055|Q8WY98|TMEM234	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.27496337890625	2	504.78289	1007.55123	0.50393	0.00025438	3.5961	0.0018153	4.1001	0.0020696	505.2857047632326	44.503	0.30185	44.503	44.408	44.71	0					12	10	2	0	0	0	0.19839	1	9842	9842		28.487	6.7402	1	103250			35519	12789	20894	20895	42999	42999					0.047753943946077015
QLHILKVLGIL	11	Unmodified	_QLHILKVLGIL_					0	0	0		SKIL|p.C272Mfs*14|1|0.25|ENSG00000136603|chr3:170361141-170361142|-/A|frameshift_variant;nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL	SKIL|p.C272Mfs*14|1|0.25|ENSG00000136603|chr3:170361141-170361142|-/A|frameshift_variant	SKIL|p.C272Mfs*14|1|0.25|ENSG00000136603|chr3:170361141-170361142|-/A|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.9171142578125	2	623.915916	1245.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.49	1	104.49	103.99	104.99	0.0011444								0	0	0	0.38203	1	27771	27771		0.30703	0.30703	1				35520	3984	20895	20896	43000	43000					0.2042026518442981
QLHLHERAR	9	Unmodified	_QLHLHERAR_					0	0	0			REV__nc|ENSG00000125386|P78312-6|FAM193A	REV__nc|ENSG00000125386|P78312-6|FAM193A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.829833984375	2	580.325788	1158.63702	0.11246	6.5266E-05	0.51877	0.00030105	0.63123	0.00036632	580.3250024871854	18.289	0.54225	18.172	17.928	18.47	-0.11739					41	18	3	0	0	0	0.34681	2	1864	1864;1947		1.8442	0	1	133080	+		35521	15262	20896	20897	43001;43002	43001					0.06404979300123159
QLHQCLILS	9	Unmodified	_QLHQCLILS_					0	0	0			REV__chr5:135937547-135940489|376|12.59|0.47|4.75|+|1|FBXL21P,FBXL21P|2	REV__chr5:135937547-135940489|376|12.59|0.47|4.75|+|1|FBXL21P,FBXL21P|2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7931518554688	2	527.789327	1053.5641	0.82487	0.00043536	-0.24245	-0.00012796	0.58243	0.0003074	527.7895662805433	37.113	1.4741	37.113	36.644	38.118	0					148	52	5	0	0	0	0.23007	1	7774	7774		19.257	0	1	5511000	+		35522	13199	20897	20898	43003	43003					0.03946089462488089
QLHVKNLF	8	Unmodified	_QLHVKNLF_					0	0	0		L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|139|3|sense	L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|139|3|sense	L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|139|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2586669921875	2	499.792727	997.5709	0.54866	0.00027421	-0.16381	-8.1869E-05	0.38485	0.00019235	499.792630169108	55.185	0.46077	55.166	54.947	55.408	-0.019077					28	16	2	0	0	0	0.34185	1	13208	13208		10.183	7.2942	1	712540			35523	12488	20898	20899	43004	43004					0.07201770405356456
QLHWRRWKRRL	11	Unmodified	_QLHWRRWKRRL_					0	0	0			REV__ENST00000498102.1_1_3:42576287-42577770:+|nuORF	REV__ENST00000498102.1_1_3:42576287-42577770:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.8805847167969	4	409.49583	1633.95422	0.0081008	3.3172E-06	-3.5788	-0.0014655	-3.5707	-0.0014622	409.49364873025513	28.806	0.1565	28.802	28.658	28.815	-0.0042572					5	4	2	0	0	0	0.33346	1	5039	5039		0.50596	0.051438	1	22098	+		35524	14848	20899	20900	43005	43005					0.16259611907321414
QLHYACDRAQL	11	Unmodified	_QLHYACDRAQL_					0	0	0			REV__nc|ENSG00000135637|Q17RM4-3|CCDC142	REV__nc|ENSG00000135637|Q17RM4-3|CCDC142	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.8849182128906	3	439.883795	1316.62955	-0.13801	-6.0709E-05	1.7123	0.0007532	1.5743	0.00069249	439.8849057634592	28.387	0.72308	28.387	28.094	28.817	0					73	24	5	0	0	0	0.39244	1	4923	4923		12.228	1.9124	1	779020	+		35525	15754	20900	20901	43006	43006					-0.01609541082461874
QLIFANKVYKS	11	Unmodified	_QLIFANKVYKS_					0	0	0			REV__ENSG00000203734|ENST00000541398|ECT2L	REV__ENSG00000203734|ENST00000541398|ECT2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2608337402344	3	437.587084	1309.73942	-0.12229	-5.3514E-05	-0.11105	-4.8596E-05	-0.23335	-0.00010211	437.5872555589673	16.284	0.84157	16.284	15.791	16.632	0					74	29	4	0	0	0	0.33346	1	1233	1233		0.094841	0	1	134010	+		35526	18905	20901	20902	43007	43007					0.09694207528355037
QLIKHAVYL	9	Unmodified	_QLIKHAVYL_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8109741210938	2	542.829309	1083.64407	0.08362	4.5391E-05	0.69891	0.00037939	0.78253	0.00042478	542.829439870384	38.855	0.41684	38.855	38.623	39.04	0					17	14	2	0	0	0	0.28128	1	8190	8190		11.64	2.2572	1	105790			35527	768	20902	20903	43008	43008					0.10558899127977384
QLIKHAVYL	9	Unmodified	_QLIKHAVYL_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8115234375	2	542.829309	1083.64407	0.51231	0.0002781	-0.2635	-0.00014303	0.24881	0.00013506	542.8287850735975	38.754	0.29904	38.847	38.674	38.973	0.092621					16	10	2	0	0	0	0.21905	1	8107	8107		23.148	9.6405	1	125530			35528	768	20902	20903	43009	43009					0.10558899127977384
QLIKHAVYL	9	Unmodified	_QLIKHAVYL_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.811279296875	2	542.829309	1083.64407	0.75433	0.00040947	-0.11123	-6.0376E-05	0.64311	0.0003491	542.8289411009198	38.812	0.31094	38.912	38.735	39.046	0.099407					15	10	2	0	0	0	0.21303	1	8116	8116		21.747	8.2388	1	127660			35529	768	20902	20903	43010	43010					0.10558899127977384
QLIQQTYTF	9	Unmodified	_QLIQQTYTF_					0	0	0			REV__nc|ENSG00000158089|Q96FL9-2|GALNT14	REV__nc|ENSG00000158089|Q96FL9-2|GALNT14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.770263671875	2	571.298039	1140.58152	0.21876	0.00012497	-0.85571	-0.00048886	-0.63695	-0.00036389	571.297352421539	58.998	0.82296	58.998	58.767	59.59	0					42	28	2	0	0	0	0.25526	1	14485	14485		7.9102	0.62092	1	651280	+		35530	16802	20903	20904	43011	43011					0.016857082691331016
QLISPNNGK	9	Unmodified	_QLISPNNGK_					0	0	0			REV__ENSG00000163681|ENST00000671191|SLMAP;REV__nc|ENSG00000163681|Q14BN4-4|SLMAP	REV__nc|ENSG00000163681|Q14BN4-4|SLMAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2610778808594	2	485.769448	969.524344	0.046909	2.2787E-05	0.060809	2.9539E-05	0.10772	5.2326E-05	485.7693653262258	29.775	0.41119	29.789	29.594	30.005	0.013474					28	13	3	0	0	0	0.1669	1	5321	5321		28.487	3.813	1	153990	+		35531	17079;23058	20904	20905	43012	43012					0.03836285783427229
QLISWWLVRQN	11	Unmodified	_QLISWWLVRQN_					0	0	0			REV__ENST00000507723.1_1_5:177021070-177022414:+|nuORF	REV__ENST00000507723.1_1_5:177021070-177022414:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7870178222656	3	481.601616	1441.78302	0.56919	0.00027412	-1.1911	-0.00057364	-0.62192	-0.00029952	481.60105767866554	32.206	0.49898	32.255	32.029	32.528	0.049259					41	17	3	0	0	0	0.33303	1	6160	6160		2.4348	0.18206	1	201310	+		35532	18334	20905	20906	43013	43013					0.07979817025511693
QLIVHQRV	8	Unmodified	_QLIVHQRV_					0	0	0		ENSG00000196345|ENST00000426540|ZKSCAN7	ENSG00000196345|ENST00000426540|ZKSCAN7	ENSG00000196345|ENST00000426540|ZKSCAN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2765197753906	2	496.803626	991.592698	0.59854	0.00029736	4.0719	0.0020229	4.6704	0.0023203	496.80507894632	85.593	0.16045	85.593	85.527	85.688	0					6	5	2	0	0	0	0.34353	1	22503	22503		4.756	0	1	52572			35533	7850	20906	20907	43014	43014					0.09656575153940139
QLKANIQI	8	Unmodified	_QLKANIQI_					0	0	0			REV__ENSG00000165506|ENST00000298292|DNAAF2	REV__ENSG00000165506|ENST00000298292|DNAAF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.73681640625	2	464.284734	926.554916	-0.35148	-0.00016319	-0.0059719	-2.7726E-06	-0.35745	-0.00016596	464.2846558144482	60.259	0.40404	60.259	60.065	60.469	0					31	14	3	0	0	0	0.27344	1	14717	14717		42.095	2.1372	1	753650	+		35534	17239	20907	20908	43015	43015					0.08870064168456793
QLKANIQI	8	Unmodified	_QLKANIQI_					0	0	0			REV__ENSG00000165506|ENST00000298292|DNAAF2	REV__ENSG00000165506|ENST00000298292|DNAAF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.28436279296875	2	464.284734	926.554916	-0.60502	-0.0002809	0.083201	3.8629E-05	-0.52181	-0.00024227	464.2846901455692	60.159	0.45668	60.254	60.019	60.475	0.095093					31	16	3	0	0	0	0.082568	1	14674	14674		63.563	0	1	609520	+		35535	17239	20907	20908	43016	43016					0.08870064168456793
QLKANIQI	8	Unmodified	_QLKANIQI_					0	0	0			REV__ENSG00000165506|ENST00000298292|DNAAF2	REV__ENSG00000165506|ENST00000298292|DNAAF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.73687744140625	2	464.284734	926.554916	-0.60502	-0.0002809	0.083201	3.8629E-05	-0.52181	-0.00024227	464.2846901455692	60.159	0.45668	60.254	60.019	60.475	0.095093					31	16	3	0	0	0	0.31617	1	14626	14626		14.838	4.0143	1	609520	+		35536	17239	20907	20908	43017	43017					0.08870064168456793
QLKANIQI	8	Unmodified	_QLKANIQI_					0	0	0			REV__ENSG00000165506|ENST00000298292|DNAAF2	REV__ENSG00000165506|ENST00000298292|DNAAF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.28460693359375	2	464.284734	926.554916	0.010761	4.9964E-06	-0.39643	-0.00018405	-0.38567	-0.00017906	464.2845416524242	60.225	0.46146	60.213	59.968	60.429	-0.011486					27	16	2	0	0	0	0.13961	2	14694	14694;14744		53.576	0	1	640010	+		35537	17239	20907	20908	43018;43019	43018					0.08870064168456793
QLKARQSTL	9	Unmodified	_QLKARQSTL_					0	0	0			REV__ENSG00000092054|ENST00000355349|MYH7	REV__ENSG00000092054|ENST00000355349|MYH7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8121337890625	2	522.811648	1043.60874	0.52243	0.00027313	0.34055	0.00017805	0.86298	0.00045118	522.8116124860893	86.147	1.1727	86.231	85.863	87.036	0.084251					107	46	4	0	0	0	0.23767	1	22601	22601		18.146	4.2403	1	2057500	+		35538	14076	20908	20909	43020	43020					0.08868236600187629
QLKDSELKS	9	Unmodified	_QLKDSELKS_					0	0	0		nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.298828125	2	524.287671	1046.56079	0.14843	7.7821E-05	2.3623	0.0012385	2.5107	0.0013163	524.289126633258	12.688	0.34887	12.688	12.498	12.847	0					14	10	3	0	0	0	0.26612	1	178	178		13.906	0	1	38634			35539	3497	20909	20910	43021	43021					0.039371178894725745
QLKDSELKS	9	Unmodified	_QLKDSELKS_					0	0	0		nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.287671	1046.56079	0.049744	2.608E-05	3.1446	0.0016487	3.1943	0.0016747	524.2892924834225	12.726	0.29982	12.659	12.434	12.734	-0.067496	8.0672E-05	0.00012714	NaN	13.906	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45103			35540	3497	20909	20910							0.039371178894725745
QLKKYRQMI	9	Unmodified	_QLKKYRQMI_					0	0	0			REV__ENSG00000151692|ENST00000320892|RNF144A	REV__ENSG00000151692|ENST00000320892|RNF144A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2319030761719	3	403.237509	1206.6907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.531	1	29.543	29.043	30.043	0.012266								0	0	0	0.25455	1	5296	5296		4.897	0.36815	1		+		35541	16551	20910	20911	43022	43022					0.09562015687606618
QLKLGWLTH	9	Unmodified	_QLKLGWLTH_					0	0	0			REV__ENST00000528216.5_1_11:3832596-3844152:+|nuORF	REV__ENST00000528216.5_1_11:3832596-3844152:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3185424804688	2	548.319109	1094.62366	0.29309	0.00016071	-1.0153	-0.00055671	-0.72221	-0.000396	548.3183655230091	107.65	0.11852	107.64	107.61	107.73	-0.0085678					49	18	3	0	0	0	0.33018	1	28363	28363		4.3292	0	1	8445700	+		35542	21986	20911	20912	43023	43023					0.08013728468154113
QLKNRMEKENF	11	Unmodified	_QLKNRMEKENF_					0	0	0			REV__ENSG00000155189|ENST00000285518|AGPAT5	REV__ENSG00000155189|ENST00000285518|AGPAT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.80047607421875	3	479.582004	1435.72418	0.38845	0.00018629	0.5065	0.00024291	0.89494	0.0004292	479.58217132001255	51.201	0.5845	51.201	50.872	51.456	0					46	21	3	0	0	0	0.33146	1	11951	11951		4.1166	1.6818	1	481710	+		35543	16692	20912	20913	43024	43024					0.02374972668872033
QLKPALGH	8	Unmodified	_QLKPALGH_					0	0	0			REV__ENSG00000086015|ENST00000361297|MAST2	REV__ENSG00000086015|ENST00000361297|MAST2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.2591857910156	2	432.25852	862.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.447	1	98.509	98.009	99.009	0.061516								0	0	0	0.37664	1	26350	26350		2.5775	0	1		+		35544	13972	20913	20914	43025	43025					0.06573525825513116
QLKPIQPKAT	10	Unmodified	_QLKPIQPKAT_					0	0	0		ZNF609|p.P708A|1|0.16|ENSG00000180357|chr15:64674976-64674976|C/G|missense_variant	ZNF609|p.P708A|1|0.16|ENSG00000180357|chr15:64674976-64674976|C/G|missense_variant	ZNF609|p.P708A|1|0.16|ENSG00000180357|chr15:64674976-64674976|C/G|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.343505859375	2	562.345323	1122.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.71	1	111.71	111.21	112.21	0								0	0	0	0.37664	1	29049	29049		3.5965	0	1				35545	23419	20914	20915	43026	43026					0.11966266811100468
QLKPIQPKAT	10	Unmodified	_QLKPIQPKAT_					0	0	0		ZNF609|p.P708A|1|0.16|ENSG00000180357|chr15:64674976-64674976|C/G|missense_variant	ZNF609|p.P708A|1|0.16|ENSG00000180357|chr15:64674976-64674976|C/G|missense_variant	ZNF609|p.P708A|1|0.16|ENSG00000180357|chr15:64674976-64674976|C/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3229370117188	2	562.345323	1122.67609	0.14318	8.0516E-05	-2.3209	-0.0013051	-2.1777	-0.0012246	562.34386781811	114.27	0.048607	114.25	114.22	114.27	-0.019096					8	5	2	0	0	0	0.32033	1	29683	29683		3.5965	0	1	14514			35546	23419	20914	20915	43027	43027					0.11966266811100468
QLKQEIHYHYG	11	Unmodified	_QLKQEIHYHYG_					0	0	0		ENSG00000204010|ENST00000371809|IFIT1B	ENSG00000204010|ENST00000371809|IFIT1B	ENSG00000204010|ENST00000371809|IFIT1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.26434326171875	3	472.573726	1414.69935	-0.055032	-2.6007E-05	-3.2247	-0.0015239	-3.2798	-0.0015499	472.90649399220354	18.317	0.2857	18.258	18.087	18.372	-0.058174					18	9	3	0	0	0	0.33336	1	1904	1904		1.1098	0.41209	1	45369			35547	8195	20915	20916	43028	43028					0.008586608578070809
QLKQEIHYHYG	11	Unmodified	_QLKQEIHYHYG_					0	0	0		ENSG00000204010|ENST00000371809|IFIT1B	ENSG00000204010|ENST00000371809|IFIT1B	ENSG00000204010|ENST00000371809|IFIT1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	472.573726	1414.69935	-0.015857	-7.4934E-06	-2.2857	-0.0010801	-2.3015	-0.0010876	472.90611827442956	18.15	0.34065	18.15	17.991	18.332	0	-0.073249	0.00091512	NaN	1.1098	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47757			35548	8195	20915	20916							0.008586608578070809
QLKQEIHYHYG	11	Unmodified	_QLKQEIHYHYG_					0	0	0		ENSG00000204010|ENST00000371809|IFIT1B	ENSG00000204010|ENST00000371809|IFIT1B	ENSG00000204010|ENST00000371809|IFIT1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	472.573726	1414.69935	0.0063306	2.9917E-06	-2.7003	-0.0012761	-2.694	-0.0012731	472.5719734298206	18.379	0.34912	18.262	18.065	18.414	-0.11739	0.03844	0.00032732	NaN	1.1098	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50961			35549	8195	20915	20916							0.008586608578070809
QLKQLAKF	8	Unmodified	_QLKQLAKF_					0	0	0			REV__ENSG00000160007|ENST00000672722|ARHGAP35	REV__ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2503662109375	2	488.302927	974.591301	0.2183	0.0001066	-0.83619	-0.00040831	-0.61789	-0.00030172	488.30254085966317	51.739	0.51228	51.749	51.506	52.018	0.0095673					30	18	2	0	0	0	0.34046	1	12018	12018		5.2307	0	1	404910	+		35550	16873	20916	20917	43029	43029					0.1029894106517304
QLKQRNTL	8	Unmodified	_QLKQRNTL_					0	0	0		nc|ENSG00000007312|P40259-2|CD79B;ENST00000559358.1_1_17:62006588-62007812:-|nuORF;ENSG00000007312|ENST00000006750|CD79B;nc|ENSG00000007312|P40259-3|CD79B	nc|ENSG00000007312|P40259-2|CD79B	nc|ENSG00000007312|P40259-2|CD79B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.798828125	2	500.79854	999.582528	0.60502	0.00030299	-0.44872	-0.00022472	0.15629	7.8271E-05	500.79790209397606	84.28	1.8809	84.28	83.859	85.74	0					158	73	4	0	0	0	0.43302	1	22177	22177		11.64	0.81637	1	2938800			35551	376	20917	20918	43030	43030					0.08271967428709104
QLKQRNTL	8	Unmodified	_QLKQRNTL_					0	0	0		nc|ENSG00000007312|P40259-2|CD79B;ENST00000559358.1_1_17:62006588-62007812:-|nuORF;ENSG00000007312|ENST00000006750|CD79B;nc|ENSG00000007312|P40259-3|CD79B	nc|ENSG00000007312|P40259-2|CD79B	nc|ENSG00000007312|P40259-2|CD79B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.79864501953125	2	500.79854	999.582528	0.56083	0.00028086	-0.36543	-0.000183	0.1954	9.7856E-05	500.7979073363671	84.158	2.954	84.235	83.274	86.228	0.077095					170	115	2	0	0	0	0.4354	1	22141	22141		10.824	0.75	1	3131100			35552	376	20917	20918	43031	43031					0.08271967428709104
QLKQRWER	8	Unmodified	_QLKQRWER_					0	0	0			REV__nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	REV__nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.3663330078125	2	572.322714	1142.63087	0.49252	0.00028188	1.7809	0.0010192	2.2734	0.0013011	572.3240081513989	52.531	0.4314	52.582	52.417	52.848	0.050575					23	15	2	0	0	0	0.33993	1	12339	12339		11.64	0	1	224010	+		35553	18947	20918	20919	43032	43032					0.065264610685972
QLKRDKPVT	9	Unmodified	_QLKRDKPVT_					0	0	0		nc|ENSG00000165478|Q14CZ8-2|HEPACAM;ENSG00000165478|ENST00000298251|HEPACAM	nc|ENSG00000165478|Q14CZ8-2|HEPACAM	nc|ENSG00000165478|Q14CZ8-2|HEPACAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2360229492188	2	542.827298	1083.64004	0.63488	0.00034463	1.6758	0.0009097	2.3107	0.0012543	542.8280395704476	66.124	1.8209	66.124	65.458	67.279	0					117	64	2	0	0	0	0.2322	1	16615	16615		14.838	5.4908	1	344370			35554	5964	20919	20920	43033	43033					0.10156809634258934
QLKRDKPVT	9	Unmodified	_QLKRDKPVT_					0	0	0		nc|ENSG00000165478|Q14CZ8-2|HEPACAM;ENSG00000165478|ENST00000298251|HEPACAM	nc|ENSG00000165478|Q14CZ8-2|HEPACAM	nc|ENSG00000165478|Q14CZ8-2|HEPACAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2360229492188	2	542.827298	1083.64004	0.59216	0.00032144	2.026	0.0010997	2.6181	0.0014212	542.8282581718348	66.14	2.1671	66.126	65.37	67.537	-0.013588					124	77	2	0	0	0	0.2322	1	16626	16626		14.838	0.25658	1	264760			35555	5964	20919	20920	43034	43034					0.10156809634258934
QLKTDERGIL	10	Unmodified	_QLKTDERGIL_					0	0	0		ENST00000605093.5_1_19:9488987-9490339:+|nuORF;nc|ENSG00000188629|Q13360-3|ZNF177;ENSG00000270011|ENST00000541595|ZNF559-ZNF177;ENSG00000188629|ENST00000683217|ZNF177	ENST00000605093.5_1_19:9488987-9490339:+|nuORF	ENST00000605093.5_1_19:9488987-9490339:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8346557617188	2	586.83532	1171.65609	0.57841	0.00033943	-1.2263	-0.00071963	-0.64789	-0.0003802	586.8343284863074	84.718	0.51428	84.718	84.405	84.92	0					33	18	2	0	0	0	0.32033	1	22231	22231		3.5965	0.70727	1	162920			35556	7761	20920	20921	43035	43035					0.07712471080526484
QLKTDERGIL	10	Unmodified	_QLKTDERGIL_					0	0	0		ENST00000605093.5_1_19:9488987-9490339:+|nuORF;nc|ENSG00000188629|Q13360-3|ZNF177;ENSG00000270011|ENST00000541595|ZNF559-ZNF177;ENSG00000188629|ENST00000683217|ZNF177	ENST00000605093.5_1_19:9488987-9490339:+|nuORF	ENST00000605093.5_1_19:9488987-9490339:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.835205078125	2	586.83532	1171.65609	0.56402	0.00033099	-1.7862	-0.0010482	-1.2222	-0.00071724	586.8340648840318	83.97	0.51429	83.953	83.896	84.411	-0.016823					32	22	2	0	0	0	0.39935	1	22027	22027		3.5965	0.60125	1	497390			35557	7761	20920	20921	43036	43036					0.07712471080526484
QLLCTWHISV	10	Unmodified	_QLLCTWHISV_					0	0	0		ENSG00000235718|ENST00000619721|MFRP	ENSG00000235718|ENST00000619721|MFRP	ENSG00000235718|ENST00000619721|MFRP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3170776367188	2	600.315709	1198.61686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.264	1	26.241	25.741	26.741	-0.022238								0	0	0	0.38187	1	4299	4299		1.3295	0.5359	1				35558	8495	20921	20922	43037	43037					0.025500475253011246
QLLELAGL	8	Unmodified	_QLLELAGL_					0	0	0			REV__ENST00000564640.5_1_16:771244-771968:+|nuORF	REV__ENST00000564640.5_1_16:771244-771968:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.7501525878906	2	428.760561	855.506569	-0.055724	-2.3892E-05	-2.4671	-0.0010578	-2.5228	-0.0010817	428.75953010400127	70.605	0.76488	70.605	69.946	70.711	0					40	27	2	0	0	0	0.25425	1	17828	17828		36.044	0	1	70970	+		35559	14362	20922	20923	43038	43038					0.07303570528563341
QLLEREKKW	9	Unmodified	_QLLEREKKW_					0	0	0			REV__ENST00000542165.1_1_11:94704505-94704637:-|nuORF	REV__ENST00000542165.1_1_11:94704505-94704637:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2364807128906	3	410.571545	1228.69281	-0.31332	-0.00012864	0.18821	7.7274E-05	-0.12511	-5.1365E-05	410.57152836054075	12.915	0.32435	12.848	12.64	12.965	-0.067495					14	10	2	0	0	0	0.26169	1	244	244		2.2828	0.69049	1	28187	+		35560	22136	20923	20924	43039	43039					0.0876076769707197
QLLHPQDP	8	Unmodified	_QLLHPQDP_					0	0	0		nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8;ENST00000568689.5_1_16:733170-734340:-|nuORF;ENST00000565302.5_1_16:732919-733769:-|nuORF;ENST00000569441.5_1_16:733170-733950:-|nuORF	nc|ENSG00000161999|Q96S16-2|JMJD8	nc|ENSG00000161999|Q96S16-2|JMJD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7895812988281	2	474.250892	946.48723	0.47911	0.00022722	-0.85268	-0.00040439	-0.37357	-0.00017717	474.2503968146234	40.133	0.53744	40.225	39.994	40.531	0.09267					30	18	3	0	0	0	0.34247	1	8466	8466		8.5933	0	1	240420			35561	5541	20924	20925	43040	43040					0.011846142376612079
QLLKPNSL	8	Unmodified	_QLLKPNSL_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7666015625	2	456.779285	911.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.524	1	15.414	14.914	15.914	-0.10981								0	0	0	0.37183	1	1055	1055		4.756	0	1		+		35562	15769	20925	20926	43041	43041					0.08470661794183343
QLLKPNSL	8	Unmodified	_QLLKPNSL_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7666320800781	2	456.779285	911.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.374	1	15.31	14.81	15.81	-0.064413								0	0	0	0.29147	1	1007	1007		30.225	3.3412	1		+		35563	15769	20925	20926	43042	43042					0.08470661794183343
QLLNRDREWLA	11	Unmodified	_QLLNRDREWLA_					0	0	0			REV__ENSG00000123171|ENST00000242819|CCDC70	REV__ENSG00000123171|ENST00000242819|CCDC70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.92474365234375	3	471.924759	1412.75245	0.24026	0.00011338	-0.20041	-9.4577E-05	0.03985	1.8806E-05	471.9246025259412	37.759	0.79124	37.85	37.555	38.347	0.090881					81	28	4	0	0	0	0.46554	1	7807	7807		2.6312	0.37851	1	1280600	+		35564	15182	20926	20927	43043	43043					0.06258038640476116
QLLPFTEQDK	10	Unmodified	_QLLPFTEQDK_					0	0	0			REV__ENST00000339566.7_1_2:74091641-74092025:+|nuORF	REV__ENST00000339566.7_1_2:74091641-74092025:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.88385009765625	3	406.883677	1217.6292	0.037463	1.5243E-05	0.85046	0.00034604	0.88792	0.00036128	406.88391478626033	20.731	1.2584	20.731	20.395	21.654	0					106	43	4	0	0	0	0.38062	1	2691	2691		7.0371	0.40671	1	537420	+		35565	20100	20927	20928	43044	43044					0.029093624693359743
QLLQRRGRTR	10	Unmodified	_QLLQRRGRTR_					0	0	0			REV__ENST00000247226.12_1_14:65215689-65216046:+|nuORF	REV__ENST00000247226.12_1_14:65215689-65216046:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.2156982421875	3	428.597088	1282.76943	-0.28343	-0.00012148	1.8712	0.000802	1.5878	0.00068052	428.9320758526293	19.185	0.51469	19.185	19.006	19.521	0					27	17	2	0	0	0	0.32051	1	2190	2190		3.8763	0.28927	1	39789	+		35566	19509	20928	20929	43045	43045					0.13936004036918348
QLLRAVSL	8	Unmodified	_QLLRAVSL_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2869873046875	2	450.287277	898.560001	0.14501	6.5297E-05	-0.11281	-5.0796E-05	0.032205	1.4501E-05	450.28709357369024	55.367	0.58833	55.367	55.119	55.707	0					44	21	3	0	0	0	0.11736	1	13255	13255		57.471	5.203	1	680100			35567	3333	20929	20930	43046	43046					0.10666368031081674
QLLRLYQLM	9	Unmodified	_QLLRLYQLM_					0	0	0		ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-5|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2;ENST00000538682.5_1_11:62651934-62653989:+|nuORF;ENST00000457660.6_1_11:62649366-62653989:+|nuORF	ENSG00000168003|ENST00000338663|SLC3A2	ENSG00000168003|ENST00000338663|SLC3A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3435668945312	2	589.341726	1176.6689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.13	1	117.15	116.65	117.65	0.023476								0	0	0	0.2672	1	30373	30373		0.52476	0	1				35568	6233	20930	20931	43047	43047					0.0876321093903698
QLLSKELFCL	10	Unmodified	_QLLSKELFCL_					0	0	0			REV__ENSG00000148841|ENST00000337478|ITPRIP	REV__ENSG00000148841|ENST00000337478|ITPRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3331298828125	2	597.333567	1192.65258	0.13419	8.0159E-05	-0.47189	-0.00028187	-0.33769	-0.00020171	597.3333251999863	60.172	1.1797	60.172	59.728	60.908	0					127	38	5	0	0	0	0.13784	2	14730	14631;14730		40.239	3.733	1	15557000	+		35569	16440	20931	20932	43048;43049	43049					0.06396084982316097
QLLSKELFCL	10	Unmodified	_QLLSKELFCL_					0	0	0			REV__ENSG00000148841|ENST00000337478|ITPRIP	REV__ENSG00000148841|ENST00000337478|ITPRIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8339233398438	2	597.333567	1192.65258	0.13419	8.0159E-05	-0.47189	-0.00028187	-0.33769	-0.00020171	597.3333251999863	60.172	1.1797	60.172	59.728	60.908	0					127	38	5	0	0	0	0.26476	1	14631	14631		33.445	3.6043	1	15557000	+		35570	16440	20931	20932	43050	43050					0.06396084982316097
QLLSKELFCL	10	Unmodified	_QLLSKELFCL_					0	0	0			REV__ENSG00000148841|ENST00000337478|ITPRIP	REV__ENSG00000148841|ENST00000337478|ITPRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.3333740234375	2	597.333567	1192.65258	-0.1222	-7.2996E-05	-0.10272	-6.1356E-05	-0.22492	-0.00013435	597.3334909018147	60.039	1.3199	60.134	59.604	60.923	0.095093					135	47	4	0	0	0	0.10215	2	14632	14632;14729		47.594	5.6388	1	13884000	+		35571	16440	20931	20932	43051;43052	43051					0.06396084982316097
QLLSKELFCL	10	Unmodified	_QLLSKELFCL_					0	0	0			REV__ENSG00000148841|ENST00000337478|ITPRIP	REV__ENSG00000148841|ENST00000337478|ITPRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.3338012695312	2	597.333567	1192.65258	0.23775	0.00014202	-0.43995	-0.0002628	-0.2022	-0.00012078	597.3333063830748	60.093	1.2329	60.082	59.683	60.916	-0.011486					132	40	5	0	0	0	0.10215	4	14623	14623;14673;14715;14767		47.594	5.6388	1	15508000	+		35572	16440	20931	20932	43053;43054;43055;43056	43053					0.06396084982316097
QLLSKLSVLLL	11	Unmodified	_QLLSKLSVLLL_					0	0	0		nc|ENSG00000149476|Q3LXA3-2|TKFC;ENSG00000149476|ENST00000394900|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.1866455078125	3	409.607596	1225.80096	0.25578	0.00010477	0.45225	0.00018524	0.70802	0.00029001	409.6077427121273	64.491	0.4337	64.583	64.284	64.718	0.09288					26	15	2	0	0	0	0.3331	1	15985	15985		2.2527	0.51045	1	104560			35573	4868	20932	20933	43057	43057					0.19709139227666128
QLLSKLSVLLL	11	Unmodified	_QLLSKLSVLLL_					0	0	0		nc|ENSG00000149476|Q3LXA3-2|TKFC;ENSG00000149476|ENST00000394900|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2579040527344	3	409.607596	1225.80096	0.31978	0.00013098	0.41015	0.000168	0.72993	0.00029898	409.6076553300164	84.743	0.32352	84.824	84.674	84.998	0.080887					17	12	2	0	0	0	0.33296	1	22178	22178		2.6312	0	1	53927			35574	4868	20932	20933	43058	43058					0.19709139227666128
QLLSKLSVLLL	11	Unmodified	_QLLSKLSVLLL_					0	0	0		nc|ENSG00000149476|Q3LXA3-2|TKFC;ENSG00000149476|ENST00000394900|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2576599121094	3	409.607596	1225.80096	0.28313	0.00011597	0.58821	0.00024093	0.87133	0.0003569	409.94209976157055	83.65	0.34188	83.633	83.535	83.877	-0.016823					24	15	2	0	0	0	0.3331	1	21953	21953		2.2527	0.51045	1	82862			35575	4868	20932	20933	43059	43059					0.19709139227666128
QLLSKLSVLLL	11	Unmodified	_QLLSKLSVLLL_					0	0	0		nc|ENSG00000149476|Q3LXA3-2|TKFC;ENSG00000149476|ENST00000394900|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.186767578125	3	409.607596	1225.80096	0.29177	0.00011951	0.23577	9.6574E-05	0.52754	0.00021609	409.60769700126565	64.183	0.75348	64.174	63.881	64.634	-0.0095291					40	27	2	0	0	0	0.3331	1	16022	16022		2.2527	0.51045	1	166910			35576	4868	20932	20933	43060	43060					0.19709139227666128
QLLSKLSVLLL	11	Unmodified	_QLLSKLSVLLL_					0	0	0		nc|ENSG00000149476|Q3LXA3-2|TKFC;ENSG00000149476|ENST00000394900|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2264099121094	3	409.607596	1225.80096	0.25151	0.00010302	0.57669	0.00023622	0.8282	0.00033924	409.60777103058166	63.537	0.53205	63.528	63.379	63.911	-0.0085526					23	18	2	0	0	0	0.3331	1	15773	15773		2.2527	0.51045	1	144930			35577	4868	20932	20933	43061	43061					0.19709139227666128
QLLSKLSVLLL	11	Unmodified	_QLLSKLSVLLL_					0	0	0		nc|ENSG00000149476|Q3LXA3-2|TKFC;ENSG00000149476|ENST00000394900|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	409.607596	1225.80096	0.1739	7.123E-05	0.65166	0.00026693	0.82556	0.00033816	409.6078158153049	64.227	0.87595	64.227	63.771	64.647	0	0.0263	0.00033815	NaN	4.1166	46	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126220			35578	4868	20932	20933							0.19709139227666128
QLLSKLSVLLL	11	Unmodified	_QLLSKLSVLLL_					0	0	0		nc|ENSG00000149476|Q3LXA3-2|TKFC;ENSG00000149476|ENST00000394900|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	nc|ENSG00000149476|Q3LXA3-2|TKFC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	409.607596	1225.80096	0.29217	0.00011968	0.46142	0.000189	0.75359	0.00030868	409.6077182783206	85.219	0.38645	85.206	85.017	85.404	-0.01284	0.19112	2.6277E-05	NaN	2.6312	16	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45689			35579	4868	20932	20933							0.19709139227666128
QLLSQLYLF	9	Unmodified	_QLLSQLYLF_					0	0	0			REV__ENST00000530760.1_1_8:110790850-110791141:+|nuORF	REV__ENST00000530760.1_1_8:110790850-110791141:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8211669921875	2	562.82115	1123.62775	0.24194	0.00013617	0.36423	0.000205	0.60616	0.00034116	562.8211570177143	69.033	0.72543	69.014	68.766	69.492	-0.019157					87	25	5	0	0	0	0.17787	1	17498	17498		26.884	0.61551	1	1785800	+		35580	22012	20933	20934	43062	43062					0.07087773171224399
QLLSRPPRQ	9	Unmodified	_QLLSRPPRQ_					0	0	0			REV__ENST00000496961.5_1_1:110040033-110040177:+|nuORF	REV__ENST00000496961.5_1_1:110040033-110040177:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3538208007812	2	547.825089	1093.63563	0.37614	0.00020606	-2.6182	-0.0014343	-2.2421	-0.0012283	547.8233198995877	51.818	0.51326	51.817	51.576	52.09	-0.00080872					32	18	2	0	0	0	0.24848	1	12105	12105		9.3831	3.1773	1	272410	+		35581	21677	20934	20935	43063	43063					0.0925534521136342
QLLTWYGGRH	10	Unmodified	_QLLTWYGGRH_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.88427734375	3	410.884123	1229.63054	-0.022751	-9.3479E-06	0.6601	0.00027123	0.63735	0.00026188	410.88442204787117	20.279	1.0632	20.279	20.045	21.108	0					114	38	4	0	0	0	0.35267	1	2475	2475		12.175	12.175	1	843930	+		35582	18559	20935	20936	43064	43064					0.024910413487532423
QLLTWYGGRH	10	Unmodified	_QLLTWYGGRH_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.8844299316406	3	410.884123	1229.63054	0.38344	0.00015755	0.34017	0.00013977	0.72361	0.00029732	410.88424155951014	20.504	1.2227	20.394	20.132	21.355	-0.11003					120	43	4	0	0	0	0.37823	1	2523	2523		7.4771	7.4771	1	717480	+		35583	18559	20935	20936	43065	43065					0.024910413487532423
QLLTWYGGRH	10	Unmodified	_QLLTWYGGRH_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8841857910156	3	410.884123	1229.63054	0.42517	0.0001747	0.18757	7.707E-05	0.61275	0.00025177	410.8841988815143	20.407	1.1669	20.355	20.037	21.204	-0.052912					129	41	4	0	0	0	0.38952	1	2510	2510		5.4027	5.4027	1	812820	+		35584	18559	20935	20936	43066	43066					0.024910413487532423
QLLTWYGGRH	10	Unmodified	_QLLTWYGGRH_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	410.884123	1229.63054	0.38344	0.00015755	0.34017	0.00013977	0.72361	0.00029732	410.88424155951014	20.504	1.2227	20.394	20.132	21.355	-0.11003	0.051331	-3.54E-05	NaN	12.175	120	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	717480	+		35585	18559	20935	20936							0.024910413487532423
QLLVSPSL	8	Unmodified	_QLLVSPSL_					0	0	0		ENST00000571080.1_1_17:881623-881719:-|nuORF	ENST00000571080.1_1_17:881623-881719:-|nuORF	ENST00000571080.1_1_17:881623-881719:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.7499694824219	2	428.760561	855.506569	-0.055724	-2.3892E-05	-2.4671	-0.0010578	-2.5228	-0.0010817	428.75953010400127	70.605	0.76488	70.605	69.946	70.711	0					40	27	2	0	0	0	0.25425	1	17875	17875		36.044	7.5574	1	70970			35586	12026	20936	20937	43067	43067					0.07303570528563341
QLLVSPSL	8	Unmodified	_QLLVSPSL_					0	0	0		ENST00000571080.1_1_17:881623-881719:-|nuORF	ENST00000571080.1_1_17:881623-881719:-|nuORF	ENST00000571080.1_1_17:881623-881719:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.7499694824219	2	428.760561	855.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.401	1	70.376	69.876	70.876	-0.024872								0	0	0	0.25356	1	17827	17827		36.044	0	1				35587	12026	20936	20937	43068	43068					0.07303570528563341
QLLWKERLVK	10	Unmodified	_QLLWKERLVK_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.74652099609375	3	438.27484	1311.80269	0.02028	8.8884E-06	0.1059	4.6415E-05	0.12619	5.5304E-05	438.2749319218121	37.883	0.35455	37.981	37.768	38.122	0.097527					21	12	2	0	0	0	0.32082	1	7870	7870		1.5923	0	1	153360	+		35588	23042	20937	20938	43069	43069					0.15926193036239056
QLMKLAFKE	9	Unmodified	_QLMKLAFKE_					0	0	0			REV__nc|ENSG00000162889|P49137-2|MAPKAPK2	REV__nc|ENSG00000162889|P49137-2|MAPKAPK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3179931640625	2	554.315177	1106.6158	-0.036901	-2.0455E-05	3.4289	0.0019007	3.392	0.0018802	554.3172573224144	14.714	0.21895	14.648	14.51	14.728	-0.066068					12	7	2	0	0	0	0.34681	1	824	824		1.8442	0	1	27198	+		35589	17019	20938	20939	43070	43070					0.06675833156396038
QLNADDKL	8	Unmodified	_QLNADDKL_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.78240966796875	2	458.740357	915.46616	-0.073146	-3.3555E-05	-0.56324	-0.00025838	-0.63638	-0.00029193	458.7399650915727	18.643	0.403	18.526	18.358	18.761	-0.11739					20	13	2	0	0	0	0.34272	1	2044	2044		7.9102	1.187	1	46110	+		35590	16705;23038	20939	20940	43071	43071					0.005046041381433497
QLNEVRAK	8	Unmodified	_QLNEVRAK_					0	0	0			REV__ENST00000396926.7_1_8:42010597-42012191:+|nuORF	REV__ENST00000396926.7_1_8:42010597-42012191:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2771911621094	2	479.277441	956.540328	0.16754	8.0296E-05	-0.638	-0.00030578	-0.47047	-0.00022548	479.2769722672002	76.583	0.56384	76.583	76.367	76.931	0					39	20	2	0	0	0	0.44734	1	19798	19798		6.7232	6.7232	1	527080	+		35591	20661	20940	20941	43072	43072					0.06031992020314192
QLNGQISLV	9	Unmodified	_QLNGQISLV_					0	0	0			REV__nc|ENSG00000001461|Q6P499-2|NIPAL3	REV__nc|ENSG00000001461|Q6P499-2|NIPAL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2788391113281	2	486.279649	970.544745	-1.3474	-0.00065523	-0.90121	-0.00043824	-2.2486	-0.0010935	486.2791253950499	34.763	0.68421	34.838	34.604	35.288	0.075306					62	24	4	0	0	0	0.19747	1	6927	6927		24.021	0.87215	1	1109300	+		35592	13315	20941	20942	43073	43073					0.058294564432458174
QLPDAPCQTQK	11	Unmodified	_QLPDAPCQTQK_					0	0	0			REV__ENSG00000145780|ENST00000274457|FEM1C	REV__ENSG00000145780|ENST00000274457|FEM1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.884521484375	3	410.204534	1227.59177	-0.017888	-7.3377E-06	-1.1864	-0.00048669	-1.2043	-0.00049402	410.2041645611431	20.346	0.44283	20.346	20.207	20.65	0					42	15	4	0	0	0	0.4112	1	2524	2524		9.7643	3.5299	1	68852	+		35593	16307	20942	20943	43074	43074					-0.012920520679472247
QLPDAPCQTQK	11	Unmodified	_QLPDAPCQTQK_					0	0	0			REV__ENSG00000145780|ENST00000274457|FEM1C	REV__ENSG00000145780|ENST00000274457|FEM1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.88427734375	3	410.204534	1227.59177	-0.017888	-7.3377E-06	-1.1864	-0.00048669	-1.2043	-0.00049402	410.2041645611431	20.346	0.44283	20.346	20.207	20.65	0					42	15	4	0	0	0	0.32951	1	2475	2475		10.315	3.6849	1	68852	+		35594	16307	20942	20943	43075	43075					-0.012920520679472247
QLPHLLVRVH	10	Unmodified	_QLPHLLVRVH_					0	0	0		ENST00000560255.2_1_15:80215703-80215943:+|nuORF	ENST00000560255.2_1_15:80215703-80215943:+|nuORF	ENST00000560255.2_1_15:80215703-80215943:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3704223632812	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.88	1	119.85	119.35	120.35	-0.024361								0	0	0	0.38202	1	30932	30932		0.40072	0	1				35595	11894	20943	20944	43076	43076					0.13292484033490837
QLPLSYFGF	9	Unmodified	_QLPLSYFGF_					0	0	0			REV__ENST00000337619.9_1_7:100803850-100804129:+|nuORF	REV__ENST00000337619.9_1_7:100803850-100804129:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.8399047851562	2	536.279118	1070.54368	0.70066	0.00037575	0.11199	6.0056E-05	0.81265	0.0004358	536.2792510826956	74.301	0.86857	74.301	74.066	74.934	0					37	29	2	0	0	0	0.24311	1	19224	19224		11.64	0	1	384360	+		35596	20086	20944	20945	43077	43077					0.011232420743453986
QLPMKKPVR	9	Unmodified	_QLPMKKPVR_					0	0	0		HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|19|1|sense;HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|19|1|sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|19|1|sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|19|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7587280273438	2	548.836611	1095.65867	0.19121	0.00010494	-0.9199	-0.00050487	-0.72869	-0.00039993	549.3376795537148	23.163	0.14038	23.163	23.11	23.25	0					5	4	2	0	0	0	0.26168	1	3376	3376		1.8442	1.3195	1	21057			35597	12408	20945	20946	43078	43078					0.11466648004466151
QLPPGGRCALA	11	Unmodified	_QLPPGGRCALA_					0	0	0		ENST00000531478.5_1_19:1064055-1065421:+|nuORF;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENSG00000064687|ENST00000263094|ABCA7	ENST00000531478.5_1_19:1064055-1065421:+|nuORF	ENST00000531478.5_1_19:1064055-1065421:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.34814453125	2	541.792401	1081.57025	0.53233	0.00028841	-3.6384	-0.0019712	-3.106	-0.0016828	541.7904222690322	29.194	0.3068	29.207	29.11	29.417	0.012264					14	10	2	0	0	0	0.32996	1	5206	5206		8.1555	0.8663	1	69677			35598	793	20946	20947	43079	43079					0.03272607694020735
QLPQAIII	8	Unmodified	_QLPQAIII_					0	0	0		ENSG00000125430|ENST00000360954|HS3ST3B1;ENSG00000153976|ENST00000284110|HS3ST3A1	ENSG00000125430|ENST00000360954|HS3ST3B1	ENSG00000125430|ENST00000360954|HS3ST3B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.2420654296875	2	448.284203	894.553853	0.37713	0.00016906	-1.2055	-0.00054039	-0.82833	-0.00037133	448.2833827275593	76.582	0.17629	76.55	76.422	76.599	-0.031487					6	5	2	0	0	0	0.32778	1	19715	19715		20.871	0	1	62155			35599	3204	20947	20948	43080	43080					0.10235849799562402
QLQHLGKPE	9	Unmodified	_QLQHLGKPE_					0	0	0			REV__ENST00000380668.9_1_X:12827377-12837651:+|nuORF	REV__ENST00000380668.9_1_X:12827377-12837651:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.830078125	2	525.290548	1048.56654	0.47498	0.0002495	-1.0803	-0.00056745	-0.60528	-0.00031795	525.2898649167663	16.929	0.43221	16.929	16.81	17.242	0					20	14	2	0	0	0	0.25706	1	1503	1503		6.7232	1.8262	1	29983	+		35600	20551	20948	20949	43081	43081					0.04420261191808095
QLQLVRAQL	9	Unmodified	_QLQLVRAQL_					0	0	0			REV__ENST00000446149.6_1_1:38181546-38201012:-|nuORF	REV__ENST00000446149.6_1_1:38181546-38201012:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.3197021484375	2	534.82984	1067.64513	0.41248	0.0002206	2.2118	0.001183	2.6243	0.0014036	534.8315417230372	27.1	0.68049	27.1	26.644	27.324	0					56	23	3	0	0	0	0.25202	1	4611	4611		10.824	2.2306	1	352500	+		35601	18255	20949	20950	43082	43082					0.11401113496890503
QLQPTRPPA	9	Unmodified	_QLQPTRPPA_					0	0	0			REV__ENST00000347528.8_2_8:41510898-41511414:-|nuORF	REV__ENST00000347528.8_2_8:41510898-41511414:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2981872558594	2	504.285266	1006.55598	-0.02089	-1.0535E-05	2.7557	0.0013897	2.7348	0.0013791	504.28709705285684	18.534	0.67157	18.476	18.145	18.816	-0.058174					46	23	3	0	0	0	0.31417	1	1905	1905		6.7232	1.9672	1	83956	+		35602	20158	20950	20951	43083	43083					0.052962785373551924
QLQQLKQRQL	10	Unmodified	_QLQQLKQRQL_					0	0	0			REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8826293945312	2	641.883136	1281.75172	0.010778	6.918E-06	0.051593	3.3117E-05	0.062371	4.0035E-05	641.8829400044114	98.645	0.61124	98.645	98.334	98.945	0					113	70	2	0	0	0	0.41673	1	26439	26439		0.40072	0	1	117030	+		35603	14260	20951	20952	43084	43084					0.12211243991418996
QLQQLREVLR	10	Unmodified	_QLQQLREVLR_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;ENST00000465291.1_1_1:17296285-17297265:+|nuORF;nc|ENSG00000058453|Q5TZA2-2|CROCC	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.38525390625	2	641.883136	1281.75172	0.13383	8.5903E-05	-0.76565	-0.00049146	-0.63182	-0.00040556	641.8824397631346	96.311	0.623	96.311	95.906	96.529	0					95	59	2	0	0	0	0.41673	1	25765	25765		0.40072	0	1	111820			35604	734	20952	20953	43085	43085					0.12211243991396259
QLQQLREVLR	10	Unmodified	_QLQQLREVLR_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;ENST00000465291.1_1_1:17296285-17297265:+|nuORF;nc|ENSG00000058453|Q5TZA2-2|CROCC	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8829956054688	2	641.883136	1281.75172	-0.01742	-1.1182E-05	-0.44196	-0.00028369	-0.45938	-0.00029487	641.8827928256103	100.7	0.32602	100.7	100.51	100.84	0					84	46	2	0	0	0	0.41673	1	26899	26899		0.40072	0	1	86538			35605	734	20952	20953	43086	43086					0.12211243991396259
QLQQLREVLR	10	Unmodified	_QLQQLREVLR_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;ENST00000465291.1_1_1:17296285-17297265:+|nuORF;nc|ENSG00000058453|Q5TZA2-2|CROCC	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8826904296875	2	641.883136	1281.75172	-0.017375	-1.1153E-05	-0.41832	-0.00026851	-0.4357	-0.00027967	641.882830968913	101.21	0.29335	101.21	101.13	101.42	0					55	39	2	0	0	0	0.41673	1	27007	27007		0.40072	0	1	65053			35606	734	20952	20953	43087	43087					0.12211243991396259
QLQQLREVLR	10	Unmodified	_QLQQLREVLR_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;ENST00000465291.1_1_1:17296285-17297265:+|nuORF;nc|ENSG00000058453|Q5TZA2-2|CROCC	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.882568359375	2	641.883136	1281.75172	0.2562	0.00016445	-0.7199	-0.00046209	-0.46371	-0.00029765	641.8825806579886	99.843	0.13507	99.882	99.801	99.936	0.038994					24	15	2	0	0	0	0.41673	1	26694	26694		0.40072	0	1	96226			35607	734	20952	20953	43088	43088					0.12211243991396259
QLQQLREVLR	10	Unmodified	_QLQQLREVLR_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;ENST00000465291.1_1_1:17296285-17297265:+|nuORF;nc|ENSG00000058453|Q5TZA2-2|CROCC	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.882568359375	2	641.883136	1281.75172	0.25657	0.00016469	-0.8408	-0.00053969	-0.58423	-0.00037501	641.8825148774164	101.18	0.13905	101.2	101.17	101.31	0.027214					25	17	2	0	0	0	0.41673	1	27004	27004		0.40072	0	1	81594			35608	734	20952	20953	43089	43089					0.12211243991396259
QLQRTFRVI	9	Unmodified	_QLQRTFRVI_					0	0	0			REV__nc|ENSG00000165526|Q96CM3-2|RPUSD4	REV__nc|ENSG00000165526|Q96CM3-2|RPUSD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2656860351562	2	580.848564	1159.68258	0.27859	0.00016182	0.14095	8.1871E-05	0.41954	0.00024369	580.8487694933765	26.184	0.41142	26.162	25.945	26.356	-0.022236					20	14	2	0	0	0	0.26168	1	4275	4275		1.8442	0	1	56053	+		35609	17244	20953	20954	43090	43090					0.10912204762507827
QLQSRQQL	8	Unmodified	_QLQSRQQL_					0	0	0		nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;ENSG00000204681|ENST00000377034|GABBR1	nc|ENSG00000204681|Q9UBS5-2|GABBR1	nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8292236328125	2	500.780348	999.546142	0.40919	0.00020492	3.4734	0.0017394	3.8826	0.0019443	500.7842447792323	38.277	0.54884	38.368	38.072	38.62	0.090881					42	19	3	0	0	0	0.32435	1	7989	7989		16.942	2.104	1	381740			35610	8251	20954	20955	43091	43091					0.046350905319854974
QLQSSLFKSTT	11	Unmodified	_QLQSSLFKSTT_					0	0	0		ENST00000490768.1_1_1:161137040-161137992:+|nuORF	ENST00000490768.1_1_1:161137040-161137992:+|nuORF	ENST00000490768.1_1_1:161137040-161137992:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.21417236328125	3	413.890832	1238.65067	0.17147	7.0972E-05	0.15525	6.4258E-05	0.32673	0.00013523	413.8913677004986	17.604	0.61405	17.543	17.152	17.766	-0.060429					26	20	2	0	0	0	0.42762	1	1710	1710		3.8459	0.77364	1	73453			35611	11165	20955	20956	43092	43092					0.040887474980536354
QLRELGTEWL	10	Unmodified	_QLRELGTEWL_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-3|VWA8	REV__nc|ENSG00000102763|A3KMH1-3|VWA8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8380737304688	2	622.83532	1243.65609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.72	1	106.72	106.22	107.22	0.0050507								0	0	0	0.37048	1	28228	28228		3.5965	0	1		+		35612	14331	20956	20957	43093	43093					0.04400471080543866
QLRFCRNY	8	Unmodified	_QLRFCRNY_					0	0	0		ENSG00000154342|ENST00000284523|WNT3A;ENSG00000108379|ENST00000225512|WNT3;nc|ENSG00000154342|P56704-2|WNT3A	ENSG00000154342|ENST00000284523|WNT3A	ENSG00000154342|ENST00000284523|WNT3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.771728515625	2	550.276918	1098.53928	0.089529	4.9266E-05	0.51123	0.00028132	0.60076	0.00033059	550.2772780474206	13.625	0.5012	13.526	13.189	13.69	-0.09929					26	17	3	0	0	0	0.34408	1	498	498		2.3027	0	1	57261			35613	2179	20957	20958	43094	43094					-0.006045456202400601
QLRFCRNY	8	Unmodified	_QLRFCRNY_					0	0	0		ENSG00000154342|ENST00000284523|WNT3A;ENSG00000108379|ENST00000225512|WNT3;nc|ENSG00000154342|P56704-2|WNT3A	ENSG00000154342|ENST00000284523|WNT3A	ENSG00000154342|ENST00000284523|WNT3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	550.276918	1098.53928	0.060678	3.339E-05	3.6428	0.0020046	3.7035	0.0020379	550.2790152889838	13.551	0.16954	13.551	13.427	13.597	0	0.012536	0.00042159	NaN	2.3027	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58780			35614	2179	20957	20958							-0.006045456202400601
QLRFSLQQGG	10	Unmodified	_QLRFSLQQGG_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2462158203125	2	567.306729	1132.59891	0.048394	2.7454E-05	0.20285	0.00011508	0.25125	0.00014254	567.3064705170013	19.101	0.40647	19.044	18.764	19.171	-0.057205					20	13	2	0	0	0	0.31794	1	2106	2106		8.1555	1.4324	1	38586	+		35615	16663	20958	20959	43095	43095					0.03791048594803215
QLRKNFGIKV	10	Unmodified	_QLRKNFGIKV_					0	0	0		ENST00000574129.5_1_17:79680521-79687104:+|nuORF;ENSG00000183048|ENST00000350690|SLC25A10;nc|ENSG00000183048|Q9UBX3-2|SLC25A10	ENST00000574129.5_1_17:79680521-79687104:+|nuORF	ENST00000574129.5_1_17:79680521-79687104:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.8159790039062	2	601.87204	1201.72953	0.65326	0.00039318	-0.69	-0.00041529	-0.036742	-2.2114E-05	601.8713872991092	51.015	0.29138	51.062	50.929	51.221	0.046574					14	10	2	0	0	0	0.32054	1	11899	11899		3.2813	0	1	184850			35616	7342	20959	20960	43096	43096					0.13673064313616123
QLRKSIIIV	9	Unmodified	_QLRKSIIIV_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|171|2|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|171|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.8115234375	2	535.358234	1068.70191	0.67666	0.00036226	-0.94462	-0.00050571	-0.26796	-0.00014345	535.3577023452981	48.391	0.45984	48.391	48.205	48.665	0					17	15	2	0	0	0	0.25526	1	11118	11118		1.8442	0	1	251710	+		35617	22718	20960	20961	43097	43097					0.1703116105340996
QLRLVSFTPR	10	Unmodified	_QLRLVSFTPR_					0	0	0			REV__ENSG00000153208|ENST00000295408|MERTK	REV__ENSG00000153208|ENST00000295408|MERTK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.55255126953125	3	406.24354	1215.70879	-0.19816	-8.0502E-05	-0.062976	-2.5583E-05	-0.26114	-0.00010609	406.24341823793554	22.269	0.59685	22.269	21.966	22.563	0					41	20	3	0	0	0	0.3179	1	3111	3111		8.9762	7.384	1	108080	+		35618	16614	20961	20962	43098	43098					0.10956473933970301
QLRQLTHNQA	10	Unmodified	_QLRQLTHNQA_					0	0	0			REV__nc|ENSG00000167711|P08697-2|SERPINF2	REV__nc|ENSG00000167711|P08697-2|SERPINF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2157897949219	3	403.554666	1207.64217	-0.17082	-6.8935E-05	-2.6425	-0.0010664	-2.8133	-0.0011353	403.5537848419287	21.929	0.43464	21.828	21.744	22.178	-0.10034					26	15	2	0	0	0	0.32137	1	3089	3089		1.7423	0.67081	1	123890	+		35619	17406	20962	20963	43099	43099					0.04665238372058411
QLRQLVLRW	9	Unmodified	_QLRQLVLRW_					0	0	0			REV__nc|ENSG00000242612|Q9NUI1-2|DECR2	REV__nc|ENSG00000242612|Q9NUI1-2|DECR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3717041015625	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.08	1	112.06	111.56	112.56	-0.015625								0	0	0	0.26704	1	29158	29158		0.6015	0	1		+		35620	23211	20963	20964	43100	43100					0.132924840334681
QLRRRWRRRR	10	Unmodified	_QLRRRWRRRR_					0	0	0			REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF	REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.9855346679688	3	513.654042	1537.9403	0.13812	7.0948E-05	0.14872	7.6391E-05	0.28685	0.00014734	513.6541018607162	95.121	1.0762	95.121	94.3	95.376	0					155	97	2	0	0	0	0.32175	1	25404	25404		0.13989	0.13989	1	429800	+		35621	22609	20964	20965	43101	43101					0.19284379198893475
QLRSPQEEAL	10	Unmodified	_QLRSPQEEAL_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8082275390625	2	585.809302	1169.60405	-1.1076	-0.00064887	-0.06056	-3.5476E-05	-1.1682	-0.00068435	585.8091661419211	34.756	0.56195	34.756	34.5	35.062	0					46	19	3	0	0	0	0.34887	1	6953	6953		12.873	0.016656	1	672010			35622	2733	20965	20966	43102	43102					0.026033076667545174
QLRSRTIVHTL	11	Unmodified	_QLRSRTIVHTL_					0	0	0		ENSG00000082515|ENST00000523037|MRPL22;nc|ENSG00000082515|Q9NWU5-2|MRPL22;nc|ENSG00000082515|Q9NWU5-3|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7878723144531	3	441.933366	1322.77827	-0.96397	-0.00042601	0.37669	0.00016647	-0.58728	-0.00025954	441.93354813887595	34.679	0.25099	34.679	34.5	34.751	0					20	8	3	0	0	0	0.33316	1	6844	6844		0.92553	0	1	87496			35623	1204	20966	20967	43103	43103					0.12978932882765548
QLRVQQQPHP	10	Unmodified	_QLRVQQQPHP_					0	0	0			REV__ENST00000271357.9_1_1:168066332-168073966:-|nuORF	REV__ENST00000271357.9_1_1:168066332-168073966:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.8843078613281	3	410.894911	1229.6629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.534	1	20.424	19.924	20.924	-0.11003								0	0	0	0.37048	1	2569	2569		6.1918	0.40842	1		+		35624	19676	20967	20968	43104	43104					0.05725828751747031
QLSHIFQQK	9	Unmodified	_QLSHIFQQK_					0	0	0		nc|ENSG00000164077|Q86VX9-3|MON1A;nc|ENSG00000164077|Q86VX9-2|MON1A;ENST00000486107.5_1_3:49947550-49967319:-|nuORF;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A	nc|ENSG00000164077|Q86VX9-3|MON1A	nc|ENSG00000164077|Q86VX9-3|MON1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.8125610351562	2	564.811648	1127.60874	0.052957	2.9911E-05	1.316	0.0007433	1.369	0.00077321	564.8121382100305	12.98	0.25381	12.881	12.757	13.011	-0.099291					10	8	2	0	0	0	0.33508	1	297	297		3.5965	0.31518	1	41943			35625	5783	20968	20969	43105	43105					0.050042366001889604
QLSHWDYYF	9	Unmodified	_QLSHWDYYF_					0	0	0			REV__ENSG00000089356|ENST00000604404|FXYD3	REV__ENSG00000089356|ENST00000604404|FXYD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.7801513671875	2	629.780013	1257.54547	0.20854	0.00013134	-0.05532	-3.484E-05	0.15322	9.6498E-05	629.7800358729882	61.487	2.8396	61.487	61.128	63.967	0					324	105	5	0	0	0	0.18803	2	15142	15142;15341		25.399	0	1	32640000	+		35626	14029	20969	20970	43106;43107	43106					-0.07299748907735193
QLSHWDYYF	9	Unmodified	_QLSHWDYYF_					0	0	0			REV__ENSG00000089356|ENST00000604404|FXYD3	REV__ENSG00000089356|ENST00000604404|FXYD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.780029296875	2	629.780013	1257.54547	-0.13417	-8.4499E-05	0.24382	0.00015355	0.10965	6.9053E-05	629.7802754849546	61.421	2.901	61.518	61.194	64.095	0.096985					326	105	6	0	0	0	0.21303	3	15164	15164;15368;15417		21.747	21.747	1	33641000	+		35627	14029	20969	20970	43108;43109;43110	43108					-0.07299748907735193
QLSHWDYYF	9	Unmodified	_QLSHWDYYF_					0	0	0			REV__ENSG00000089356|ENST00000604404|FXYD3	REV__ENSG00000089356|ENST00000604404|FXYD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.7802124023438	2	629.780013	1257.54547	0.051319	3.232E-05	0.046845	2.9502E-05	0.098164	6.1822E-05	629.7801794335297	61.543	3.8877	61.533	61.162	65.05	-0.0094566					384	142	6	0	0	0	0.28674	2	15390	15390;15843		10.824	0	1	35994000	+		35628	14029	20969	20970	43111;43112	43111					-0.07299748907735193
QLSIREPLV	9	Unmodified	_QLSIREPLV_					0	0	0			REV__ENSG00000204131|ENST00000633930|NHSL2	REV__ENSG00000204131|ENST00000633930|NHSL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2586669921875	2	527.816399	1053.61824	0.44047	0.00023249	-0.56873	-0.00030019	-0.12826	-6.77E-05	527.8161484045401	55.537	0.13138	55.518	55.434	55.565	-0.019081					5	4	2	0	0	0	0.24993	1	13275	13275		5.2969	1.3525	1	128280	+		35629	18918	20970	20971	43113	43113					0.09358004885689297
QLSVGHIQF	9	Unmodified	_QLSVGHIQF_					0	0	0			REV__nc|ENSG00000111224|Q9NR21-2|PARP11	REV__nc|ENSG00000111224|Q9NR21-2|PARP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7781372070312	2	514.779816	1027.54508	0.21169	0.00010897	-0.31491	-0.00016211	-0.10323	-5.3139E-05	514.7795867599991	40.268	2.7233	40.367	38.784	41.508	0.099403					179	98	2	0	0	0	0.30064	1	8134	8134		8.7454	0.58988	1	635030	+		35630	14710	20971	20972	43114	43114					0.03240876163090434
QLSVKLKYK	9	Unmodified	_QLSVKLKYK_					0	0	0			REV__nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	REV__nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3299560546875	2	553.850242	1105.68593	0.6827	0.00037811	-0.13885	-7.6899E-05	0.54385	0.00030121	553.8501960434023	47.594	0.28951	47.637	47.43	47.72	0.043324					13	10	2	0	0	0	0.259	1	10809	10809		5.2969	0	1	113210	+		35631	23026	20972	20973	43115	43115					0.13731454816502264
QLTALQVLN	9	Unmodified	_QLTALQVLN_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7905578613281	2	500.295299	998.576045	0.67089	0.00033564	-0.79182	-0.00039614	-0.12093	-6.0503E-05	500.2945284627383	32.129	0.66763	32.172	31.994	32.662	0.042362					34	23	2	0	0	0	0.25431	1	6072	6072		9.3831	2.66	1	266340			35632	4807	20973	20974	43116	43116					0.07670029477321805
QLTDPPIL	8	Unmodified	_QLTDPPIL_					0	0	0		ENSG00000154127|ENST00000284273|UBASH3B	ENSG00000154127|ENST00000284273|UBASH3B	ENSG00000154127|ENST00000284273|UBASH3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2840576171875	2	448.758018	895.501483	0.12124	5.4406E-05	-0.22671	-0.00010174	-0.10547	-4.733E-05	448.7580441220785	75.417	0.89885	75.417	75.097	75.996	0					77	32	3	0	0	0	0.29634	1	19381	19381		34.102	0	1	1144300			35633	5106	20974	20975	43117	43117					0.04955266665945146
QLTEDITRYF	10	Unmodified	_QLTEDITRYF_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2;EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	nc|ENSG00000079819|O43491-3|EPB41L2;EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	643.3248291015625	2	643.324785	1284.63502	0.99714	0.00064149	-0.63985	-0.00041163	0.3573	0.00022986	643.3242775704971	56.748	0.54868	56.729	56.541	57.09	-0.019077					32	19	2	0	0	0	0.29092	1	13669	13669		21.537	1.1224	1	540650			35634	1142;12336	20975	20976	43118	43118					0.0040846098097517824
QLTEDITRYF	10	Unmodified	_QLTEDITRYF_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2;EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	nc|ENSG00000079819|O43491-3|EPB41L2;EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	643.324785	1284.63502	0.57084	0.00036724	-0.29183	-0.00018774	0.27901	0.00017949	643.3245044934256	56.55	0.42879	56.55	56.37	56.799	0	-0.04983	7.8989E-05	NaN	21.537	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297640			35635	1142;12336	20975	20976							0.0040846098097517824
QLTEDITRYF	10	Unmodified	_QLTEDITRYF_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2;EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	nc|ENSG00000079819|O43491-3|EPB41L2;EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	643.324785	1284.63502	0.79035	0.00050845	-0.22669	-0.00014583	0.56367	0.00036262	643.3248365976474	56.442	0.39269	56.521	56.41	56.802	0.078674	-0.078908	0.00016281	NaN	21.537	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377710			35636	1142;12336	20975	20976							0.0040846098097517824
QLTHSGTER	9	Unmodified	_QLTHSGTER_					0	0	0			REV__ENSG00000015133|ENST00000389857|CCDC88C	REV__ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7593383789062	2	514.759612	1027.50467	-0.12184	-6.2717E-05	0.28004	0.00014416	0.15821	8.1438E-05	514.7599089137682	13.606	0.77281	13.507	13.337	14.11	-0.099291					83	27	4	0	0	0	0.29638	1	594	594		9.3831	0	1	3566900	+		35637	13451	20976	20977	43119	43119					-0.007980902273402535
QLTLVSCGKP	10	Unmodified	_QLTLVSCGKP_					0	0	0			REV__ENSG00000108474|ENST00000225609|PIGL	REV__ENSG00000108474|ENST00000225609|PIGL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7755126953125	2	523.289159	1044.56377	0.52641	0.00027546	-0.70316	-0.00036795	-0.17675	-9.2489E-05	523.2888843607457	26.905	0.61443	26.893	26.625	27.239	-0.01156					34	21	2	0	0	0	0.30076	1	4502	4502		22.658	8.752	1	72310	+		35638	14596	20977	20978	43120	43120					0.043266697426361134
QLTMWSPQNF	10	Unmodified	_QLTMWSPQNF_					0	0	0		ENST00000438568.6_1_1:150479567-150479729:+|nuORF	ENST00000438568.6_1_1:150479567-150479729:+|nuORF	ENST00000438568.6_1_1:150479567-150479729:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5643310546875	3	417.865741	1250.57539	0.18483	7.7236E-05	-1.9497	-0.00081473	-1.7649	-0.00073749	417.8651483499125	32.258	0.55738	32.312	32.072	32.63	0.054371					25	19	2	0	0	0	0.32051	1	6066	6066		1.9064	0	1	140370			35639	10538	20978	20979	43121	43121					-0.03987133234022622
QLTSLVAVGAF	11	Unmodified	_QLTSLVAVGAF_					0	0	0			REV__ENSG00000182747|ENST00000331858|SLC35D3	REV__ENSG00000182747|ENST00000331858|SLC35D3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.2885131835938	2	553.316232	1104.61791	0.53901	0.00029824	-0.65608	-0.00036302	-0.11706	-6.4773E-05	553.3159269355347	48.415	0.348	48.415	48.18	48.528	0					22	11	3	0	0	0	0.32778	1	11030	11030		6.7232	0	1	209280	+		35640	18213	20979	20980	43122	43122					0.06978585165848017
QLTYRRQVYK	10	Unmodified	_QLTYRRQVYK_					0	0	0		nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5;ENST00000553281.5_1_14:89088194-89171927:-|nuORF;nc|ENSG00000165521|Q05BV3-2|EML5	nc|ENSG00000165521|Q05BV3|EML5	nc|ENSG00000165521|Q05BV3|EML5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7439270019531	3	452.257849	1353.75172	-0.17589	-7.9549E-05	0.21968	9.935E-05	0.043783	1.9801E-05	452.5923585646577	27.645	0.80161	27.633	27.344	28.146	-0.011562					59	27	3	0	0	0	0.32015	1	4819	4819		2.8433	0	1	677250			35641	5971	20980	20981	43123	43123					0.08899243991413641
QLVLRAQKKR	10	Unmodified	_QLVLRAQKKR_					0	0	0			REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.8958740234375	3	413.938451	1238.79352	0.56327	0.00023316	-0.40122	-0.00016608	0.16205	6.7079E-05	413.9382643007112	20.671	0.58737	20.561	20.277	20.864	-0.11003					60	20	4	0	0	0	0.31969	1	2659	2659		5.7834	0	1	307580	+		35642	15911	20981	20982	43124	43124					0.1836784447057198
QLVPPPRPL	9	Unmodified	_QLVPPPRPL_					0	0	0			REV__ENST00000487527.5_1_17:27916841-27940597:+|nuORF	REV__ENST00000487527.5_1_17:27916841-27940597:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.78155517578125	2	508.816202	1015.61785	0.35936	0.00018285	0.099495	5.0625E-05	0.45885	0.00023347	508.8162357555227	37.318	0.53745	37.411	37.17	37.707	0.093018					25	19	2	0	0	0	0.24688	1	7693	7693		14.838	3.198	1	115480	+		35643	21562	20982	20983	43125	43125					0.11066629956508223
QLVRHGHNQ	9	Unmodified	_QLVRHGHNQ_					0	0	0			REV__ENSG00000197948|ENST00000435817|FCHSD1	REV__ENSG00000197948|ENST00000435817|FCHSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3109130859375	2	544.789038	1087.56352	0.70919	0.00038636	0.19316	0.00010523	0.90235	0.00049159	544.7899760561261	47.376	0.63973	47.428	47.168	47.808	0.052574					43	23	2	0	0	0	0.25066	1	10838	10838		11.64	1.5664	1	375920	+		35644	18782	20983	20984	43126	43126					0.0232443085765226
QLVSDRYVM	9	Unmodified	_QLVSDRYVM_					0	0	0		TDRD5|p.Q527Sfs*8|1|0.09|ENSG00000162782|chr1:179639895-179639895|T/-|frameshift_variant;nc|ENSG00000162782|Q8NAT2|TDRD5;ENSG00000162782|ENST00000444136|TDRD5	TDRD5|p.Q527Sfs*8|1|0.09|ENSG00000162782|chr1:179639895-179639895|T/-|frameshift_variant	TDRD5|p.Q527Sfs*8|1|0.09|ENSG00000162782|chr1:179639895-179639895|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2689208984375	2	555.784241	1109.55393	0.12387	6.8847E-05	-0.76924	-0.00042753	-0.64536	-0.00035868	555.7834552338271	17.554	0.52322	17.437	17.289	17.812	-0.11739					25	17	2	0	0	0	0.26188	1	1745	1745		1.6526	0	1	70160			35645	5618	20984	20985	43127	43127					0.0035348173723832588
QLWMELKQVA	10	Unmodified	_QLWMELKQVA_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.2156066894531	3	415.893519	1244.65873	0.026011	1.0818E-05	2.2132	0.00092045	2.2392	0.00093127	416.2276709147598	22.49	0.96004	22.445	22.124	23.084	-0.044867					49	33	2	0	0	0	0.38515	1	3106	3106		3.3196	0	1	154480	+		35646	17183	20985	20986	43128	43128					0.04618603213816641
QLWSLMQKL	9	Unmodified	_QLWSLMQKL_					0	0	0			REV__ENST00000361428.2_3_6:43307309-43307342:-|nuORF	REV__ENST00000361428.2_3_6:43307309-43307342:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.3194580078125	2	573.820627	1145.6267	-0.17364	-9.9638E-05	1.1339	0.00065068	0.96029	0.00055104	574.3227684893552	111.5	0.26604	111.5	111.4	111.67	0					43	35	2	0	0	0	0.26099	1	28996	28996		2.9952	0.93549	1	143880	+		35647	20280	20986	20987	43129	43129					0.05971235530682861
QLYNEHIY	8	Unmodified	_QLYNEHIY_					0	0	0			REV__ENST00000449510.6_1_12:109955755-109964222:+|nuORF	REV__ENST00000449510.6_1_12:109955755-109964222:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7879638671875	2	540.261456	1078.50836	0.56689	0.00030627	-0.78646	-0.00042489	-0.21957	-0.00011863	540.7616416884612	53.157	0.69352	53.157	52.875	53.568	0					74	25	5	0	0	0	0.29855	1	12489	12489		24.674	0	1	713980	+		35648	16528	20987	20988	43130	43130					-0.027754204534630844
QLYWSHPRK	9	Unmodified	_QLYWSHPRK_					0	0	0		ENST00000557367.2_1_14:50053001-50053064:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.8255004882812	2	607.825089	1213.63563	0.27953	0.0001699	0.43174	0.00026242	0.71127	0.00043233	607.8253598143984	22.336	0.60299	22.336	22.105	22.708	0					42	20	3	0	0	0	0.07944	2	3105	3105;3159		41.956	28.05	1	149850			35649	8362	20988	20989	43131;43132	43131					0.03735345211339336
QLYWSHPRK	9	Unmodified	_QLYWSHPRK_					0	0	0		ENST00000557367.2_1_14:50053001-50053064:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.55267333984375	3	405.552485	1213.63563	-0.21261	-8.6223E-05	0.44981	0.00018242	0.2372	9.6197E-05	405.5526577414236	22.358	1.7289	22.257	21.943	23.672	-0.10034					156	62	4	0	0	0	0.069366	3	3121	3121;3161;3212		35.612	35.612	1	1731800			35650	8362	20988	20989	43133;43134;43135	43133					0.03735345211339336
QLYWSHPRK	9	Unmodified	_QLYWSHPRK_					0	0	0		ENST00000557367.2_1_14:50053001-50053064:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.825439453125	2	607.825089	1213.63563	0.33381	0.0002029	0.70897	0.00043093	1.0428	0.00063383	607.825363105492	22.361	0.57102	22.261	22.045	22.616	-0.10034					48	20	3	0	0	0	0.11201	2	3125	3125;3183		36.506	26.432	1	136330			35651	8362	20988	20989	43136;43137	43136					0.03735345211339336
QLYWSHPRK	9	Unmodified	_QLYWSHPRK_					0	0	0		ENST00000557367.2_1_14:50053001-50053064:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.825439453125	2	607.825089	1213.63563	0.097792	5.9441E-05	0.675	0.00041028	0.77279	0.00046972	607.8254077514655	22.395	0.6138	22.35	22.095	22.709	-0.044867					45	20	3	0	0	0	0.28225	2	3124	3124;3178		11.495	8.2134	1	122300			35652	8362	20988	20989	43138;43139	43138					0.03735345211339336
QLYWSHPRK	9	Unmodified	_QLYWSHPRK_					0	0	0		ENST00000557367.2_1_14:50053001-50053064:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	405.552485	1213.63563	-0.22831	-9.2593E-05	0.52637	0.00021347	0.29806	0.00012088	405.5526752375713	22.336	1.4018	22.336	22.017	23.419	0	0.031195	6.0533E-05	NaN	35.612	153	48	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1879500			35653	8362	20988	20989							0.03735345211339336
QLYWSHPRK	9	Unmodified	_QLYWSHPRK_					0	0	0		ENST00000557367.2_1_14:50053001-50053064:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.552485	1213.63563	-0.26397	-0.00010705	0.45972	0.00018644	0.19575	7.9386E-05	405.552675198697	22.368	1.8617	22.322	21.95	23.812	-0.04669	0.016661	-2.0565E-05	NaN	35.612	153	65	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1375000			35654	8362	20988	20989							0.03735345211339336
QMIVKRFSF	9	Unmodified	_QMIVKRFSF_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3208618164062	2	578.320794	1154.62703	0.31024	0.00017942	0.25437	0.00014711	0.56461	0.00032653	578.3207372612743	82.173	2.3333	82.242	81.461	83.795	0.068985					204	95	3	0	0	0	0.30623	1	21244	21244		7.9102	0.80843	1	1075100			35655	7876	20989	20990	43140	43140					0.05590655250534837
QMIVKRFSF	9	Unmodified	_QMIVKRFSF_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3214721679688	2	578.320794	1154.62703	0.38603	0.00022325	0.33455	0.00019348	0.72057	0.00041672	578.3207795532456	82.408	2.4147	82.387	81.478	83.892	-0.020584					239	99	3	0	0	0	0.30623	1	21282	21282		7.9102	0.80843	1	1098200			35656	7876	20989	20990	43141	43141					0.05590655250534837
QMKIRFLQLVR	11	Unmodified	_QMKIRFLQLVR_					0	0	0		ENST00000437682.6_2_8:39022337-39022657:+|nuORF	ENST00000437682.6_2_8:39022337-39022657:+|nuORF	ENST00000437682.6_2_8:39022337-39022657:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.9588623046875	3	477.958746	1430.85441	0.2872	0.00013727	0.11869	5.6728E-05	0.40589	0.000194	477.9587866012619	90.5	1.0181	90.59	89.847	90.865	0.090675					160	79	5	0	0	0	0.48212	1	23972	23972		0.45452	0	1	1572300			35657	10534	20990	20991	43142	43142					0.15621613458506545
QMPRRSWT	8	Unmodified	_QMPRRSWT_					0	0	0		ENST00000592685.5_1_19:10574574-10577767:+|nuORF	ENST00000592685.5_1_19:10574574-10577767:+|nuORF	ENST00000592685.5_1_19:10574574-10577767:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2684936523438	2	531.269093	1060.52363	0.078552	4.1732E-05	0.087274	4.6366E-05	0.16583	8.8098E-05	531.2690134583017	27.955	0.69543	27.956	27.626	28.322	0.0004673					45	24	2	0	0	0	0.45431	1	4873	4873		4.3292	0	1	205750			35658	12201	20991	20992	43143	43143					-0.00420832137274374
QMQRAFKT	8	Unmodified	_QMQRAFKT_					0	0	0			REV__ENST00000467925.5_1_2:42935083-42946163:+|nuORF	REV__ENST00000467925.5_1_2:42935083-42946163:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2876281738281	2	505.266019	1008.51748	-0.048923	-2.4719E-05	0.060578	3.0608E-05	0.011656	5.8893E-06	505.265970767511	13.38	0.6275	13.28	13.011	13.638	-0.099291					42	21	3	0	0	0	0.34414	1	336	336		2.0598	2.0598	1	355560	+		35659	21311	20992	20993	43144	43144					0.013566496312023446
QMRELFPFKM	10	Unmodified	_QMRELFPFKM_					0	0	0			REV__ENST00000507984.5_1_5:88119720-88122924:-|nuORF	REV__ENST00000507984.5_1_5:88119720-88122924:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.2775573730469	3	442.894755	1325.66243	-0.1488	-6.5901E-05	-3.6652	-0.0016233	-3.814	-0.0016892	443.22730363166653	12.491	0.1376	12.394	12.356	12.493	-0.096607					6	4	2	0	0	0	0.32165	1	155	155		0.69767	0.07084	1	6450.9	+		35660	21767	20993	20994	43145	43145					0.012629497160332903
QMYIPSLLIVI	11	Unmodified	_QMYIPSLLIVI_					0	0	0		ENSG00000145888|ENST00000274576|GLRA1;nc|ENSG00000145888|P23415|GLRA1;nc|ENSG00000145451|O75311-2|GLRA3;ENSG00000145451|ENST00000274093|GLRA3;nc|ENSG00000101958|P23416-3|GLRA2;GLRA2|p.T387Rfs*34|1|0.06|ENSG00000101958|chrX:14730285-14730286|-/GATG|frameshift_variant;nc|ENSG00000101958|P23416-2|GLRA2;ENSG00000101958|ENST00000218075|GLRA2	ENSG00000145888|ENST00000274576|GLRA1	ENSG00000145888|ENST00000274576|GLRA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	645.2307739257812	2	645.380517	1288.74648	0.38812	0.00025049	2.1076	0.0013602	2.4957	0.0016107	645.3816767105276	55.573	0.40591	55.554	55.29	55.696	-0.019081					17	14	2	0	0	0	0.33037	1	13245	13245		7.609	3.4194	1	238910			35661	4678	20994	20995	43146	43146					0.11365804084584852
QNFQRLIER	9	Unmodified	_QNFQRLIER_					0	0	0			REV__nc|ENSG00000275410|P35680-3|HNF1B	REV__nc|ENSG00000275410|P35680-3|HNF1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.2532348632812	2	602.333279	1202.652	0.57165	0.00034432	-0.054781	-3.2996E-05	0.51687	0.00031133	602.332745571808	58.712	0.40317	58.804	58.612	59.015	0.091301					17	13	2	0	0	0	0.25066	1	14288	14288		11.64	0	1	104230	+		35662	19331	20995	20996	43147	43147					0.05878426377466894
QNFTAHDKQP	10	Unmodified	_QNFTAHDKQP_					0	0	0		nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.2760009765625	2	593.285994	1184.55744	0.25687	0.0001524	-3.9459	-0.0023411	-3.6891	-0.0021887	593.7852722443378	40.97	0.3003	40.97	40.796	41.096	0					15	10	3	0	0	0	0.31867	1	8793	8793		18.146	5.1039	1	66876			35663	4501	20996	20997	43148	43148					-0.027461321645205317
QNGGKMMEIT	10	Unmodified	_QNGGKMMEIT_					0	0	0			REV__nc|ENSG00000134762|Q14574-2|DSC3	REV__nc|ENSG00000134762|Q14574-2|DSC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.770751953125	2	554.759909	1107.50526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.518	1	65.607	65.107	66.107	0.088882								0	0	0	0.35216	1	16340	16340		13.906	0	1		+		35664	15699	20997	20998	43149	43149					-0.04418754894163612
QNHISRIPP	9	Unmodified	_QNHISRIPP_					0	0	0		ENSG00000188783|ENST00000343110|PRELP	ENSG00000188783|ENST00000343110|PRELP	ENSG00000188783|ENST00000343110|PRELP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.7826538085938	2	531.296165	1060.57778	0.29037	0.00015427	-0.2894	-0.00015376	0.00097085	5.1581E-07	531.2960364329927	22.658	0.60579	22.658	22.39	22.996	0					36	20	3	0	0	0	0.25879	1	3216	3216		4.756	0.81161	1	71932			35665	7774	20998	20999	43150	43150					0.04991083285949571
QNILYLCF	8	Unmodified	_QNILYLCF_					0	0	0		ENST00000463046.5_1_2:61449770-61450205:-|nuORF	ENST00000463046.5_1_2:61449770-61450205:-|nuORF	ENST00000463046.5_1_2:61449770-61450205:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.71142578125	2	507.259871	1012.50519	0.14711	7.4622E-05	-2.4263	-0.0012308	-2.2792	-0.0011561	507.7609192561468	69.385	0.66952	69.385	69.174	69.843	0					28	23	2	0	0	0	0.34046	1	17557	17557		9.3474	1.4373	1	157590			35666	10761	20999	21000	43151	43151					-0.0005638683184088222
QNILYLCF	8	Unmodified	_QNILYLCF_					0	0	0		ENST00000463046.5_1_2:61449770-61450205:-|nuORF	ENST00000463046.5_1_2:61449770-61450205:-|nuORF	ENST00000463046.5_1_2:61449770-61450205:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	507.259871	1012.50519	0.39611	0.00020093	-2.4451	-0.0012403	-2.049	-0.0010394	507.761862716111	68.998	0.57101	69.07	68.83	69.401	0.071938	-0.15741	-1.5769E-05	NaN	9.3474	25	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84969			35667	10761	20999	21000							-0.0005638683184088222
QNLFQQSL	8	Unmodified	_QNLFQQSL_					0	0	0		nc|ENSG00000205744|Q8IV53-2|DENND1C;ENSG00000205744|ENST00000381480|DENND1C;ENST00000591030.5_1_19:6477238-6481723:-|nuORF;ENST00000592543.5_1_19:6476946-6479902:-|nuORF	nc|ENSG00000205744|Q8IV53-2|DENND1C	nc|ENSG00000205744|Q8IV53-2|DENND1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.78173828125	2	489.256174	976.497795	0.21614	0.00010575	0.25704	0.00012576	0.47318	0.00023151	489.256268856812	33.13	0.644	33.13	32.692	33.336	0					41	22	2	0	0	0	0.32886	1	6323	6323		10.824	2.9138	1	251890			35668	8301	21000	21001	43152	43152					0.00860596892096055
QNLRKKSV	8	Unmodified	_QNLRKKSV_					0	0	0		Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|33|3|sense	Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|33|3|sense	Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|33|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7921142578125	2	486.801083	971.587613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.565	1	81.541	81.041	82.041	-0.02404								0	0	0	0.36169	1	21234	21234		9.3474	2.9933	1				35669	12355	21001	21002	43153	43153					0.10068271291322617
QNLYGTPVF	9	Unmodified	_QNLYGTPVF_					0	0	0		ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2305908203125	2	519.766374	1037.5182	0.34358	0.00017858	-1.1424	-0.00059379	-0.79885	-0.00041521	519.7659607459185	80.21	0.36951	80.183	80.006	80.376	-0.026825					18	12	2	0	0	0	0.24688	1	20802	20802		14.838	0.93222	1	152120			35670	3624	21002	21003	43154	43154					0.0009376755190260155
QNLYGTPVF	9	Unmodified	_QNLYGTPVF_					0	0	0		ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	ENSG00000132357|ENST00000254691|CARD6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	519.766374	1037.5182	0.3156	0.00016404	-1.141	-0.00059305	-0.8254	-0.00042902	519.7660800828335	80.071	0.37165	80.132	79.888	80.26	0.061409	-0.025521	9.0864E-07	NaN	14.838	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167610			35671	3624	21002	21003							0.0009376755190260155
QNNLKQLE	8	Unmodified	_QNNLKQLE_					0	0	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.2932434082031	2	493.766906	985.519259	0.24123	0.00011911	0.24724	0.00012208	0.48848	0.00024119	493.76684638835644	19.223	0.44601	19.107	18.838	19.284	-0.11592					26	15	3	0	0	0	0.34294	1	2225	2225		7.2892	1.0834	1	40004			35672	8740	21003	21004	43155	43155					0.025919819207956607
QNPGDQEWLK	10	Unmodified	_QNPGDQEWLK_					0	0	0		nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.7940063476562	2	607.793652	1213.57275	0.65149	0.00039597	-0.35894	-0.00021816	0.29254	0.00017781	607.7935675724668	44.596	0.60818	44.596	44.383	44.991	0					51	21	4	0	0	0	0.33104	1	9905	9905		16.149	1.3108	1	731750			35673	12814	21004	21005	43156	43156					-0.025492653673381938
QNQKLQYQS	9	Unmodified	_QNQKLQYQS_					0	0	0			REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	REV__ENST00000538571.6_1_14:58909433-59003756:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8068237304688	2	568.78837	1135.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.496	1	24.423	23.923	24.923	-0.072559								0	0	0	0.2362	1	3770	3770		10.824	0	1		+		35674	14208	21005	21006	43157	43157					-0.0001724802177704987
QNRANIVV	8	Unmodified	_QNRANIVV_					0	0	0			REV__ENSG00000204386|ENST00000375631|NEU1	REV__ENSG00000204386|ENST00000375631|NEU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2640380859375	2	457.264333	912.514114	-0.011571	-5.2908E-06	-0.16765	-7.666E-05	-0.17922	-8.1951E-05	457.26419584546926	69.559	1.8701	69.559	68.977	70.847	0					133	67	3	0	0	0	0.4419	1	17565	17565		8.5933	1.304	1	536180	+		35675	18937	21006	21007	43158	43158					0.054357228488470355
QNREKSEEQL	10	Unmodified	_QNREKSEEQL_					0	0	0		nc|ENSG00000187144|Q7Z572-2|SPATA21;ENSG00000187144|ENST00000335496|SPATA21	nc|ENSG00000187144|Q7Z572-2|SPATA21	nc|ENSG00000187144|Q7Z572-2|SPATA21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.8919982910156	3	420.877474	1259.61059	-0.27486	-0.00011568	3.0967	0.0013033	2.8218	0.0011876	420.87878160950146	23.107	0.34201	23.107	22.936	23.278	0					14	11	2	0	0	0	0.31629	1	3307	3307		5.7834	0.73591	1	26056			35676	7668	21007	21008	43159	43159					-0.008827991725183892
QNTATQGLL	9	Unmodified	_QNTATQGLL_					0	0	0		ENSG00000266524|ENST00000580279|GDF10	ENSG00000266524|ENST00000580279|GDF10	ENSG00000266524|ENST00000580279|GDF10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.2544860839844	2	473.253631	944.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.074	1	18.016	17.516	18.516	-0.058174								0	0	0	0.264	1	1820	1820		1.8442	0	1				35677	8678	21008	21009	43160	43160					0.018242930294718462
QNTEVVLYL	9	Unmodified	_QNTEVVLYL_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.792724609375	2	539.792589	1077.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.848	1	70.909	70.409	71.409	0.060783								0	0	0	0.17427	1	17971	17971		29.082	4.8716	1				35678	8113	21009	21010	43161	43161					0.03494305894832905
QNTKLKHIRT	10	Unmodified	_QNTKLKHIRT_					0	0	0			REV__ENSG00000232125|ENST00000452335|DYTN	REV__ENSG00000232125|ENST00000452335|DYTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8688354492188	2	619.870028	1237.7255	0.20348	0.00012613	-0.46722	-0.00028961	-0.26374	-0.00016348	619.8692710448544	97.491	1.1283	97.485	96.973	98.101	-0.0055466					232	118	3	0	0	0	0.41085	1	26266	26266		1.4819	0	1	379940	+		35679	19139	21010	21011	43162	43162					0.11614974819894996
QNVAESEEEEF	11	Unmodified	_QNVAESEEEEF_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B;nc|ENSG00000188649|Q6DHV5-4|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.8522644042969	3	437.517612	1309.53101	0.43417	0.00018996	0.12634	5.5277E-05	0.56051	0.00024524	437.5176313739726	48.193	0.45079	48.241	48.049	48.5	0.04752					32	16	3	0	0	0	0.45202	1	11014	11014		4.4062	1.7749	1	362890			35680	7765	21011	21012	43163	43163					-0.11137910637171444
QNVAESEEEEF	11	Unmodified	_QNVAESEEEEF_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B;nc|ENSG00000188649|Q6DHV5-4|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2681884765625	3	437.517612	1309.53101	0.26415	0.00011557	0.48629	0.00021276	0.75044	0.00032833	437.51785371909574	48.071	0.52202	48.115	47.987	48.509	0.04332					30	19	2	0	0	0	0.33236	1	10938	10938		4.4062	1.9714	1	380390			35681	7765	21011	21012	43164	43164					-0.11137910637171444
QNVAESEEEEF	11	Unmodified	_QNVAESEEEEF_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B;nc|ENSG00000188649|Q6DHV5-4|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	437.517612	1309.53101	0.23694	0.00010367	0.40135	0.0001756	0.63829	0.00027926	437.51776079157594	48.237	0.50526	48.237	48.077	48.582	0	0.039523	0.00014665	NaN	4.4062	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383000			35682	7765	21011	21012							-0.11137910637171444
QNVNTKCITI	10	Unmodified	_QNVNTKCITI_					0	0	0		ENSG00000166949|ENST00000327367|SMAD3	ENSG00000166949|ENST00000327367|SMAD3	ENSG00000166949|ENST00000327367|SMAD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2791748046875	2	567.302798	1132.59104	0.41904	0.00023772	-0.12709	-7.2096E-05	0.29195	0.00016562	567.3026555687153	63.785	1.6045	63.785	63.068	64.673	0					140	58	4	0	0	0	0.25821	1	15777	15777		34.932	3.6637	1	1534300			35683	6133	21012	21013	43165	43165					0.030051532830157157
QNVYLNQLY	9	Unmodified	_QNVYLNQLY_					0	0	0			REV__ENSG00000178562|ENST00000324106|CD28	REV__ENSG00000178562|ENST00000324106|CD28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3347778320312	2	577.795663	1153.57677	-0.070678	-4.0837E-05	0.64958	0.00037532	0.5789	0.00033449	577.7958876866785	61.657	0.93435	61.754	61.507	62.442	0.096985					70	33	4	0	0	0	0.19839	1	15357	15357		21.747	8.7042	1	537150	+		35684	18040	21013	21014	43166	43166					0.006128241263922973
QPAAKRQKL	9	Unmodified	_QPAAKRQKL_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.322021484375	2	520.322183	1038.62981	0.077357	4.0251E-05	-0.82541	-0.00042948	-0.74806	-0.00038923	520.3219860761932	12.765	0.47788	12.765	12.641	13.118	0					57	16	6	0	0	0	0.29176	1	236	236		10.074	4.8433	1	707600			35685	4869	21014	21015	43167	43167					0.11204246699708165
QPAAKRQKL	9	Unmodified	_QPAAKRQKL_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3219604492188	2	520.322183	1038.62981	0.053355	2.7762E-05	-0.70709	-0.00036792	-0.65374	-0.00034015	520.3219933791371	12.789	0.63972	12.69	12.549	13.189	-0.099291					58	21	4	0	0	0	0.18803	1	241	241		25.399	16.806	1	621300			35686	4869	21014	21015	43168	43168					0.11204246699708165
QPAAKRQKL	9	Unmodified	_QPAAKRQKL_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.322021484375	2	520.322183	1038.62981	-0.063725	-3.3158E-05	-0.49689	-0.00025854	-0.56061	-0.0002917	520.3220595871949	12.813	0.52335	12.746	12.61	13.134	-0.067496					50	17	4	0	0	0	0.23007	1	240	240		19.257	11.968	1	689790			35687	4869	21014	21015	43169	43169					0.11204246699708165
QPADALLGS	9	Unmodified	_QPADALLGS_					0	0	0		nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1;ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-5|NLRP1	nc|ENSG00000091592|Q9C000-3|NLRP1	nc|ENSG00000091592|Q9C000-3|NLRP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.24774169921875	2	436.229625	870.444697	-0.90209	-0.00039352	1.0666	0.00046528	0.16452	7.1768E-05	436.230051983283	34.399	0.35735	34.471	34.296	34.654	0.072388					21	12	2	0	0	0	0.19839	1	6825	6825		21.747	11.673	1	110590			35688	1407	21015	21016	43170	43170					0.004292191094236841
QPAGGARR	8	Unmodified	_QPAGGARR_					0	0	0			REV__ENSG00000133067|ENST00000367278|LGR6	REV__ENSG00000133067|ENST00000367278|LGR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.7277526855469	2	406.727918	811.441283	0.094691	3.8513E-05	-0.31468	-0.00012799	-0.21999	-8.9474E-05	406.72775493589853	79.169	0.64384	79.169	78.906	79.55	0					45	26	2	0	0	0	0.45169	2	20500	20500;20536		5.2307	0	1	251980	+		35689	15603	21016	21017	43171;43172	43171					0.02802013846076079
QPAGGARR	8	Unmodified	_QPAGGARR_					0	0	0			REV__ENSG00000133067|ENST00000367278|LGR6	REV__ENSG00000133067|ENST00000367278|LGR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.7278747558594	2	406.727918	811.441283	0.099191	4.0344E-05	-0.30104	-0.00012244	-0.20185	-8.2099E-05	406.72776592305127	79.105	0.77282	79.167	78.896	79.669	0.061417					56	34	2	0	0	0	0.46022	1	20481	20481		2.3027	0	1	230220	+		35690	15603	21016	21017	43173	43173					0.02802013846076079
QPAGGARR	8	Unmodified	_QPAGGARR_					0	0	0			REV__ENSG00000133067|ENST00000367278|LGR6	REV__ENSG00000133067|ENST00000367278|LGR6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	406.727918	811.441283	0.094691	3.8513E-05	-0.31468	-0.00012799	-0.21999	-8.9474E-05	406.72775493589853	79.169	0.64384	79.169	78.906	79.55	0	0.0014923	6.8875E-05	NaN	5.2307	45	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251980	+		35691	15603	21016	21017							0.02802013846076079
QPAGGARR	8	Unmodified	_QPAGGARR_					0	0	0			REV__ENSG00000133067|ENST00000367278|LGR6	REV__ENSG00000133067|ENST00000367278|LGR6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	406.727918	811.441283	0.099191	4.0344E-05	-0.30104	-0.00012244	-0.20185	-8.2099E-05	406.72776592305127	79.105	0.77282	79.167	78.896	79.669	0.061417	-0.0011752	7.9964E-05	NaN	5.2307	56	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230220	+		35692	15603	21016	21017							0.02802013846076079
QPAGGARR	8	Unmodified	_QPAGGARR_					0	0	0			REV__ENSG00000133067|ENST00000367278|LGR6	REV__ENSG00000133067|ENST00000367278|LGR6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	406.727918	811.441283	0.20746	8.4381E-05	-0.539	-0.00021922	-0.33153	-0.00013484	406.7277038817566	79.196	0.67393	79.168	78.896	79.57	-0.028931	-0.00031709	-0.0001136	NaN	5.2307	45	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298810	+		35693	15603	21016	21017							0.02802013846076079
QPAGSAQRLAQ	11	Unmodified	_QPAGSAQRLAQ_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8156127929688	2	563.801811	1125.58907	0.088071	4.9655E-05	2.8148	0.001587	2.9029	0.0016367	564.304983637547	31.556	0.27456	31.556	31.361	31.636	0					18	9	2	0	0	0	0.29518	1	5928	5928		22.658	2.2045	1	259380	+		35694	15255	21017	21018	43174	43174					0.03129860589410782
QPAGSAQRLAQ	11	Unmodified	_QPAGSAQRLAQ_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.815673828125	2	563.801811	1125.58907	0.2382	0.0001343	2.2612	0.0012748	2.4994	0.0014091	563.8029290510989	31.509	0.33212	31.55	31.255	31.587	0.040991					16	11	3	0	0	0	0.15851	1	5900	5900		34.932	2.1464	1	447550	+		35695	15255	21017	21018	43175	43175					0.03129860589410782
QPAGSAQRLAQ	11	Unmodified	_QPAGSAQRLAQ_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.801811	1125.58907	0.088071	4.9655E-05	2.8148	0.001587	2.9029	0.0016367	564.304983637547	31.556	0.27456	31.556	31.361	31.636	0	-0.0091998	0.00036815	NaN	34.932	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259380	+		35696	15255	21017	21018							0.03129860589410782
QPAGSAQRLAQ	11	Unmodified	_QPAGSAQRLAQ_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	563.801811	1125.58907	0.20803	0.00011729	2.5006	0.0014098	2.7086	0.0015271	563.802855730645	31.546	0.361	31.589	31.322	31.683	0.042364	0.023855	1.3818E-05	NaN	34.932	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276730	+		35697	15255	21017	21018							0.03129860589410782
QPAGSAQRLAQ	11	Unmodified	_QPAGSAQRLAQ_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	563.801811	1125.58907	0.2382	0.0001343	2.2612	0.0012748	2.4994	0.0014091	563.8029290510989	31.509	0.33212	31.55	31.255	31.587	0.040991	-0.014655	-0.00025618	NaN	34.932	16	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	447550	+		35698	15255	21017	21018							0.03129860589410782
QPAISRLTL	9	Unmodified	_QPAISRLTL_					0	0	0		ENST00000438948.1_1_22:20287467-20300466:+|nuORF;nc|ENSG00000100033|O43272-2|PRODH;nc|ENSG00000100033|O43272-1|PRODH;ENSG00000100033|ENST00000357068|PRODH;ENST00000609229.1_1_22:18904401-18907344:-|nuORF;ENST00000313755.9_1_22:18900690-18907344:-|nuORF	ENST00000438948.1_1_22:20287467-20300466:+|nuORF	ENST00000438948.1_1_22:20287467-20300466:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.80328369140625	2	499.803291	997.59203	0.47161	0.00023571	-0.16064	-8.0289E-05	0.31097	0.00015543	499.80314467100396	49	0.661	49	48.773	49.434	0					61	23	4	0	0	0	0.22935	1	11230	11230		19.362	3.5148	1	2217900			35699	1522	21018	21019	43176	43176					0.09313735714226823
QPAISRLTL	9	Unmodified	_QPAISRLTL_					0	0	0		ENST00000438948.1_1_22:20287467-20300466:+|nuORF;nc|ENSG00000100033|O43272-2|PRODH;nc|ENSG00000100033|O43272-1|PRODH;ENSG00000100033|ENST00000357068|PRODH;ENST00000609229.1_1_22:18904401-18907344:-|nuORF;ENST00000313755.9_1_22:18900690-18907344:-|nuORF	ENST00000438948.1_1_22:20287467-20300466:+|nuORF	ENST00000438948.1_1_22:20287467-20300466:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7691345214844	2	499.803291	997.59203	0.37214	0.00018599	0.06984	3.4906E-05	0.44197	0.0002209	499.80321570579514	48.991	0.72075	49.036	48.768	49.489	0.044891					68	25	4	0	0	0	0.20381	1	11262	11262		29.841	9.426	1	1809000			35700	1522	21018	21019	43177	43177					0.09313735714226823
QPALFSGLAE	10	Unmodified	_QPALFSGLAE_					0	0	0		ENSG00000099769|ENST00000215539|IGFALS;nc|ENSG00000099769|P35858-2|IGFALS	ENSG00000099769|ENST00000215539|IGFALS	ENSG00000099769|ENST00000215539|IGFALS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7592163085938	2	516.771657	1031.52876	-0.071665	-3.7034E-05	3.1589	0.0016324	3.0873	0.0015954	516.7734386911106	25.519	0.19113	25.487	25.378	25.57	-0.031408					9	6	2	0	0	0	0.31745	1	4065	4065		5.2969	0	1	38588			35701	1492	21019	21020	43178	43178					0.014257502063173888
QPANKGFRAL	10	Unmodified	_QPANKGFRAL_					0	0	0		ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.2818603515625	2	551.311815	1100.60908	0.28812	0.00015884	-0.59311	-0.00032699	-0.30499	-0.00016815	551.3113975302691	25.235	0.46862	25.235	25.035	25.504	0					23	15	2	0	0	0	0.31926	1	4003	4003		5.7319	1.7875	1	53817			35702	8738	21020	21021	43179	43179					0.06279656320043614
QPANKGFRAL	10	Unmodified	_QPANKGFRAL_					0	0	0		ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.7979125976562	2	551.311815	1100.60908	0.18905	0.00010423	-0.8532	-0.00047038	-0.66415	-0.00036615	551.3113577200463	25.333	0.43618	25.278	25.102	25.539	-0.055931					22	14	2	0	0	0	0.31515	1	4018	4018		12.241	4.0851	1	58561			35703	8738	21020	21021	43180	43180					0.06279656320043614
QPANKGFRAL	10	Unmodified	_QPANKGFRAL_					0	0	0		ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.2818603515625	2	551.311815	1100.60908	-0.019427	-1.071E-05	-0.51572	-0.00028432	-0.53514	-0.00029503	551.3113612627141	25.317	0.38898	25.285	25.098	25.487	-0.031408					22	13	2	0	0	0	0.31745	1	4009	4009		8.7454	7.2635	1	65153			35704	8738	21020	21021	43181	43181					0.06279656320043614
QPAPPREAHF	10	Unmodified	_QPAPPREAHF_					0	0	0		ENSG00000122026|ENST00000311549|RPL21;ENST00000483765.5_1_13:27827977-27830662:+|nuORF	ENSG00000122026|ENST00000311549|RPL21	ENSG00000122026|ENST00000311549|RPL21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.2935791015625	2	575.293622	1148.57269	-0.0027481	-1.5809E-06	0.29373	0.00016898	0.29098	0.0001674	575.2937451082024	28.41	0.33316	28.41	28.277	28.611	0					19	11	2	0	0	0	0.37454	1	4940	4940		8.1555	4.2111	1	124190			35705	3028	21021	21022	43182	43182					0.0043477942331264785
QPAPPREAHF	10	Unmodified	_QPAPPREAHF_					0	0	0		ENSG00000122026|ENST00000311549|RPL21;ENST00000483765.5_1_13:27827977-27830662:+|nuORF	ENSG00000122026|ENST00000311549|RPL21	ENSG00000122026|ENST00000311549|RPL21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7957763671875	2	575.293622	1148.57269	0.14627	8.4146E-05	0.65587	0.00037732	0.80213	0.00046146	575.2941294829805	28.341	0.46862	28.337	28.221	28.689	-0.0042572					21	16	2	0	0	0	0.37454	1	4937	4937		8.1555	4.2111	1	137020			35706	3028	21021	21022	43183	43183					0.0043477942331264785
QPAPPSGYF	9	Unmodified	_QPAPPSGYF_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENST00000506347.2_1_4:39975255-39975922:+|nuORF	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.28466796875	2	482.232168	962.449782	0.15384	7.4187E-05	0.033421	1.6117E-05	0.18726	9.0304E-05	482.2322005129444	52.132	0.51221	52.132	51.784	52.296	0					25	18	2	0	0	0	0.20167	1	12226	12226		22.736	3.2973	1	132630			35707	938	21022	21023	43184	43184					-0.0329447702795278
QPAPTPLKM	9	Oxidation (M)	_QPAPTPLKM(Oxidation (M))_		QPAPTPLKM(1)		QPAPTPLKM(42)	0	0	1		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;ENST00000476994.1_1_17:17723326-17726886:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.77081298828125	2	499.770603	997.526652	0.29461	0.00014724	0.51007	0.00025492	0.80468	0.00040215	499.77059016691044	26.829	0.65145	26.829	26.586	27.237	0					57	22	3	0	0	0	0.079752	1	4486	4486		41.84	20.968	1	249300			35708	977	21023	21024	43185	43185		120			0.027789981968794564
QPAPTPLKM	9	Oxidation (M)	_QPAPTPLKM(Oxidation (M))_					0	0	1		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;ENST00000476994.1_1_17:17723326-17726886:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	499.770603	997.526652	0.46343	0.00023161	0.35455	0.00017719	0.81798	0.0004088	499.7704836051088	26.799	0.64591	26.787	26.567	27.213	-0.011562	-0.025643	-2.2997E-05	NaN	41.84	55	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269630			35709	977	21023	21024				120			0.027789981968794564
QPARLLLSE	9	Unmodified	_QPARLLLSE_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2924194335938	2	513.800749	1025.58694	-0.2164	-0.00011119	0.64697	0.00033241	0.43057	0.00022123	513.8011908677041	12.835	0.50174	12.767	12.52	13.022	-0.067496					21	16	2	0	0	0	0.31038	1	303	303		7.2892	0	1	55706			35710	6578	21024	21025	43186	43186					0.07517431851601941
QPARPGLLL	9	Unmodified	_QPARPGLLL_					0	0	0		ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	ENSG00000178921|ENST00000314666|PFAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.8008117675781	2	482.800552	963.58655	0.40415	0.00019512	0.43207	0.0002086	0.83622	0.00040373	482.80069674080687	46.747	0.51187	46.799	46.603	47.114	0.052574					24	18	2	0	0	0	0.24581	1	10593	10593		16.942	2.3606	1	242220			35711	7086	21025	21026	43187	43187					0.10330056922430231
QPASFAVSL	9	Unmodified	_QPASFAVSL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.247802734375	2	460.247818	918.481082	0.078861	3.6296E-05	0.22934	0.00010555	0.3082	0.00014185	460.2478865516281	63.193	0.8659	63.193	62.881	63.746	0					87	31	4	0	0	0	4.1361E-11	3	15635	15588;15635;15681		189.78	96.954	1	3656000			35712	7913	21026	21027	43188;43189;43190	43189					0.01858096006139931
QPASFAVSL	9	Unmodified	_QPASFAVSL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.2474670410156	2	460.247818	918.481082	0.15712	7.2316E-05	0.12357	5.6871E-05	0.28069	0.00012919	460.24782686461094	63.067	0.88629	63.163	62.854	63.74	0.095722					91	31	4	0	0	0	3.5085E-07	3	15555	15555;15599;15653		166.45	81.091	1	3619500			35713	7913	21026	21027	43191;43192;43193	43191					0.01858096006139931
QPASFAVSL	9	Unmodified	_QPASFAVSL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.2478332519531	2	460.247818	918.481082	0.19653	9.0455E-05	0.057832	2.6617E-05	0.25437	0.00011707	460.2478036352476	63.203	0.93539	63.195	62.887	63.823	-0.0085564					92	33	4	0	0	0	3.5085E-07	3	15616	15570;15616;15666		166.45	81.091	1	3304500			35714	7913	21026	21027	43194;43195;43196	43195					0.01858096006139931
QPASLTVTTKD	11	Unmodified	_QPASLTVTTKD_					0	0	0		nc|ENSG00000110171|O75382-4|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3;nc|ENSG00000110171|O75382-3|TRIM3	nc|ENSG00000110171|O75382-4|TRIM3	nc|ENSG00000110171|O75382-4|TRIM3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8121948242188	2	580.81151	1159.60847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.178	1	13.11	12.61	13.61	-0.067496								0	0	0	0.38146	1	346	346		0.96228	0.36078	1				35715	2299	21027	21028	43197	43197					0.03504772089650032
QPATPTRTI	9	Unmodified	_QPATPTRTI_					0	0	0		nc|ENSG00000143190|P14859-4|POU2F1;nc|ENSG00000143190|P14859-5|POU2F1;nc|ENSG00000143190|P14859-3|POU2F1;nc|ENSG00000143190|P14859|POU2F1;nc|ENSG00000143190|P14859-2|POU2F1;ENSG00000143190|ENST00000367866|POU2F1	nc|ENSG00000143190|P14859-4|POU2F1	nc|ENSG00000143190|P14859-4|POU2F1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8107604980469	2	492.777274	983.539994	0.15107	7.4442E-05	0.12815	6.3151E-05	0.27922	0.00013759	492.77730299168667	25.925	0.35025	25.886	25.75	26.1	-0.038671					18	11	2	0	0	0	0.259	1	4192	4192		5.2969	1.3525	1	121650			35716	4487	21028	21029	43198	43198					0.04756572300470907
QPDLRRIVEL	10	Unmodified	_QPDLRRIVEL_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;nc|ENSG00000038358|Q6P2E9-2|EDC4	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.57855224609375	3	413.5787	1237.71427	0.34597	0.00014309	-0.43037	-0.00017799	-0.084396	-3.4904E-05	413.57840853168756	54.798	0.73539	54.798	54.462	55.198	0					73	26	5	0	0	0	0.28078	3	13053	13005;13053;13106		22.775	13.531	1	1127400			35717	589	21029	21030	43199;43200;43201	43200					0.10492152725805681
QPDLRRIVEL	10	Unmodified	_QPDLRRIVEL_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;nc|ENSG00000038358|Q6P2E9-2|EDC4	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	413.5787	1237.71427	0.57051	0.00023595	-0.84636	-0.00035004	-0.27585	-0.00011409	413.57829350929774	54.747	0.85768	54.811	54.459	55.317	0.063202	-0.029307	-0.00018724	NaN	22.775	72	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1278400			35718	589	21029	21030							0.10492152725805681
QPDLRRIVEL	10	Unmodified	_QPDLRRIVEL_					0	0	0		ENSG00000038358|ENST00000358933|EDC4;ENST00000536072.6_1_16:67909906-67914140:+|nuORF;nc|ENSG00000038358|Q6P2E9-2|EDC4	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	413.5787	1237.71427	0.57358	0.00023722	-0.77149	-0.00031907	-0.19791	-8.1853E-05	413.57828839748464	54.927	0.86193	54.911	54.575	55.437	-0.015919	0.070893	-9.4347E-05	NaN	22.775	80	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1203100			35719	589	21029	21030							0.10492152725805681
QPDQTRIVAL	10	Unmodified	_QPDQTRIVAL_					0	0	0		ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8225708007812	2	570.822212	1139.62987	0.4326	0.00024694	-0.19883	-0.0001135	0.23377	0.00013344	570.822057275096	44.074	1.1747	44.151	43.841	45.015	0.077518					123	43	4	0	0	0	0.010092	1	9681	9681		82.529	34.935	1	6986000			35720	1954	21030	21031	43202	43202					0.06564201909031908
QPDQTRIVAL	10	Unmodified	_QPDQTRIVAL_					0	0	0		ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8223266601562	2	570.822212	1139.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.887	1	43.971	43.471	44.471	0.083996								0	0	0	2.1854E-09	1	9669	9669		125.04	63.436	1				35721	1954	21030	21031	43203	43203					0.06564201909031908
QPDVPTQSTH	10	Unmodified	_QPDVPTQSTH_					0	0	0			REV__nc|ENSG00000100100|Q96FE7-3|PIK3IP1	REV__nc|ENSG00000100100|Q96FE7-3|PIK3IP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3215942382812	2	555.264727	1108.5149	0.39149	0.00021738	3.5433	0.0019675	3.9348	0.0021848	555.2665773766793	42.177	0.34093	42.262	42.121	42.462	0.085197					20	11	2	0	0	0	0.31237	1	9202	9202		16.149	5.3252	1	205010	+		35722	14161	21031	21032	43204	43204					-0.03501527292769424
QPEGPLAVLR	10	Unmodified	_QPEGPLAVLR_					0	0	0		nc|ENSG00000136877|Q05932-3|FPGS;nc|ENSG00000136877|Q05932-2|FPGS;nc|ENSG00000136877|Q05932-4|FPGS;ENSG00000136877|ENST00000373247|FPGS	nc|ENSG00000136877|Q05932-3|FPGS	nc|ENSG00000136877|Q05932-3|FPGS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.3290405273438	2	540.314023	1078.61349	0.4522	0.00024433	0.15124	8.1718E-05	0.60344	0.00032605	540.3139419308176	47.056	0.72728	47.108	46.817	47.544	0.052574					65	26	3	0	0	0	0.37454	1	10694	10694		8.1555	0.24537	1	1472200			35723	4009	21032	21033	43205	43205					0.07733120742932442
QPELAARSVG	10	Unmodified	_QPELAARSVG_					0	0	0			REV__ENST00000398319.6_1_22:24407913-24408033:+|nuORF	REV__ENST00000398319.6_1_22:24407913-24408033:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7710571289062	2	514.28018	1026.54581	0.15465	7.9532E-05	1.6655	0.00085652	1.8201	0.00093605	514.2813739543236	16.073	0.43009	16.073	15.918	16.349	0					24	14	3	0	0	0	0.27979	1	1175	1175		27.629	7.1752	1	65988	+		35724	20683	21033	21034	43206	43206					0.033596708121422125
QPELAARSVG	10	Unmodified	_QPELAARSVG_					0	0	0			REV__ENST00000398319.6_1_22:24407913-24408033:+|nuORF	REV__ENST00000398319.6_1_22:24407913-24408033:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	514.28018	1026.54581	0.041093	2.1133E-05	1.5025	0.00077268	1.5435	0.00079381	514.2812000567701	16.207	0.32661	16.093	15.921	16.247	-0.11434	0.030502	-6.0895E-05	NaN	16.149	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71970	+		35725	20683	21033	21034							0.033596708121422125
QPELAARSVG	10	Unmodified	_QPELAARSVG_					0	0	0			REV__ENST00000398319.6_1_22:24407913-24408033:+|nuORF	REV__ENST00000398319.6_1_22:24407913-24408033:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	514.28018	1026.54581	0.083551	4.2969E-05	1.5532	0.00079876	1.6367	0.00084173	514.2812960290385	16.084	0.5248	16.021	15.917	16.442	-0.062534	-0.041265	-8.7341E-06	NaN	16.149	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79863	+		35726	20683	21033	21034							0.033596708121422125
QPERLEKK	8	Unmodified	_QPERLEKK_					0	0	0			REV__ENSG00000113522|ENST00000378823|RAD50	REV__ENSG00000113522|ENST00000378823|RAD50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7710571289062	2	514.298373	1026.58219	0.13734	7.0634E-05	-1.1579	-0.00059549	-1.0205	-0.00052486	514.2970966186517	15.942	0.56122	15.942	15.706	16.267	0					31	19	2	0	0	0	0.34092	1	1175	1175		13.508	0	1	51730	+		35727	14811	21034	21035	43207	43207					0.06996547708831713
QPERLEKK	8	Unmodified	_QPERLEKK_					0	0	0			REV__ENSG00000113522|ENST00000378823|RAD50	REV__ENSG00000113522|ENST00000378823|RAD50	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	514.298373	1026.58219	0.039307	2.0215E-05	-0.70231	-0.0003612	-0.663	-0.00034098	514.2973683170356	16.032	0.64327	15.918	15.718	16.362	-0.11434	-0.011051	4.8123E-05	NaN	7.9102	37	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36974	+		35728	14811	21034	21035							0.06996547708831713
QPFEGLEKF	9	Unmodified	_QPFEGLEKF_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8178100585938	2	547.779482	1093.54441	0.44358	0.00024298	-0.18847	-0.00010324	0.25511	0.00013975	547.7796423386776	64.938	0.55279	64.926	64.521	65.074	-0.01133					31	19	2	0	0	0	0.24289	1	16199	16199		18.146	6.5061	1	137840			35729	845	21035	21036	43208	43208					0.0013803672338781325
QPFEGLEKF	9	Unmodified	_QPFEGLEKF_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	547.779482	1093.54441	0.64448	0.00035303	-0.43919	-0.00024058	0.20529	0.00011246	547.7795276024692	64.771	0.56751	64.864	64.471	65.038	0.09288	-0.094321	-0.00041486	NaN	18.146	25	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168530			35730	845	21035	21036							0.0013803672338781325
QPFFQKRSEL	10	Unmodified	_QPFFQKRSEL_					0	0	0		ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET	ENSG00000230667|ENST00000596516|SETSIP	ENSG00000230667|ENST00000596516|SETSIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.2312927246094	3	427.2313	1278.67207	0.14912	6.371E-05	-0.10267	-4.3865E-05	0.046449	1.9844E-05	427.2312110959125	36.816	0.8054	36.816	36.479	37.285	0					93	28	4	0	0	0	0.28694	1	7536	7536		29.281	14.443	1	1726400			35731	8468	21036	21037	43209	43209					0.043881773174234695
QPFFQKRSEL	10	Unmodified	_QPFFQKRSEL_					0	0	0		ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET	ENSG00000230667|ENST00000596516|SETSIP	ENSG00000230667|ENST00000596516|SETSIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.2310485839844	3	427.2313	1278.67207	0.041418	1.7695E-05	0.0063823	2.7267E-06	0.047801	2.0422E-05	427.23126182272983	36.646	0.92941	36.733	36.403	37.332	0.087406					92	33	4	0	0	0	0.20023	1	7451	7451		32.616	20.389	1	1938900			35732	8468	21036	21037	43210	43210					0.043881773174234695
QPFFQKRSEL	10	Unmodified	_QPFFQKRSEL_					0	0	0		ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET	ENSG00000230667|ENST00000596516|SETSIP	ENSG00000230667|ENST00000596516|SETSIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.34423828125	2	640.343312	1278.67207	0.91237	0.00058423	0.32481	0.00020799	1.2372	0.00079222	640.3434582268897	36.69	0.55014	36.783	36.536	37.086	0.093018					41	19	3	0	0	0	0.32615	1	7477	7477		14.405	5.0223	1	291850			35733	8468	21036	21037	43211	43211					0.043881773174234695
QPFFQKRSEL	10	Unmodified	_QPFFQKRSEL_					0	0	0		ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET	ENSG00000230667|ENST00000596516|SETSIP	ENSG00000230667|ENST00000596516|SETSIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.2313232421875	3	427.2313	1278.67207	0.34805	0.0001487	-0.26513	-0.00011327	0.082917	3.5425E-05	427.2311587420788	36.684	0.99267	36.777	36.43	37.423	0.093018					104	35	4	0	0	0	0.25783	1	7491	7491		32.616	32.616	1	1892600			35734	8468	21036	21037	43212	43212					0.043881773174234695
QPFFVTSL	8	Unmodified	_QPFFVTSL_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2;ENST00000490420.1_1_13:103301442-103301502:+|nuORF	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7529602050781	2	469.752736	937.490919	0.24374	0.0001145	0.28231	0.00013261	0.52605	0.00024711	469.75274785336904	81.789	0.69564	81.765	81.497	82.193	-0.024048					59	28	3	0	0	0	0.37937	1	21271	21271		21.747	1.293	1	672290			35735	3826	21037	21038	43213	43213					0.019672840115276813
QPFKPLSI	8	Unmodified	_QPFKPLSI_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2345275878906	2	465.276378	928.538203	0.0087332	4.0634E-06	-0.9632	-0.00044816	-0.95447	-0.00044409	465.2759329890178	51.427	0.75997	51.473	51.221	51.981	0.046574					58	27	3	0	0	0	0.28088	1	11994	11994		32.305	3.8186	1	1376800			35736	6741	21038	21039	43214	43214					0.07107563282522733
QPFKPLSI	8	Unmodified	_QPFKPLSI_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2638244628906	2	465.276378	928.538203	0.22481	0.0001046	-1.0912	-0.00050771	-0.86639	-0.00040311	465.2759360251886	51.494	0.74441	51.503	51.22	51.964	0.0095673					67	27	4	0	0	0	0.3474	1	11994	11994		25.399	3.6527	1	1469300			35737	6741	21038	21039	43215	43215					0.07107563282522733
QPFKPLSI	8	Unmodified	_QPFKPLSI_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	465.276378	928.538203	0.10197	4.7445E-05	-0.93283	-0.00043402	-0.83086	-0.00038658	465.2759322966149	51.433	0.6123	51.433	51.172	51.784	0	-0.03663	4.4615E-05	NaN	32.305	55	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1290900			35738	6741	21038	21039							0.07107563282522733
QPFNHFGCY	9	Unmodified	_QPFNHFGCY_					0	0	0		ENST00000425888.1_1_3:196293984-196295328:-|nuORF	ENST00000425888.1_1_3:196293984-196295328:-|nuORF	ENST00000425888.1_1_3:196293984-196295328:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7351684570312	2	556.734551	1111.45455	0.3875	0.00021573	0.24643	0.00013719	0.63393	0.00035293	556.7347458838932	86.632	1.0835	86.717	86.396	87.479	0.08477					148	46	6	0	0	0	0.30623	1	22797	22797		7.9102	0	1	1265800			35739	10412	21039	21040	43216	43216					-0.0967191615682168
QPGDFVLSVL	10	Unmodified	_QPGDFVLSVL_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;nc|ENSG00000111679|P29350-2|PTPN6;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6;PTPN6|p.P158Qfs*61|1|0.25|ENSG00000111679|chr12:6954949-6954949|C/-|frameshift_variant	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2960205078125	2	537.795132	1073.57571	0.66214	0.0003561	-1.8971	-0.0010202	-1.2349	-0.00066413	538.2953561661866	86.732	0.55522	86.732	86.354	86.909	0					46	22	3	0	0	0	0.18128	1	22849	22849		34.932	5.0915	1	281400			35740	10317	21040	21041	43217	43217					0.0418660975747116
QPGDFVLSVL	10	Unmodified	_QPGDFVLSVL_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;nc|ENSG00000111679|P29350-2|PTPN6;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6;PTPN6|p.P158Qfs*61|1|0.25|ENSG00000111679|chr12:6954949-6954949|C/-|frameshift_variant	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7951049804688	2	537.795132	1073.57571	0.46107	0.00024796	-1.2586	-0.00067687	-0.79753	-0.00042891	537.7948598615045	86.608	0.64734	86.692	86.286	86.933	0.084251					40	26	2	0	0	0	0.12791	1	22799	22799		41.956	5.4494	1	248440			35741	10317	21040	21041	43218	43218					0.0418660975747116
QPGEVRLH	8	Unmodified	_QPGEVRLH_					0	0	0		nc|ENSG00000095539|Q9NTN9-3|SEMA4G	nc|ENSG00000095539|Q9NTN9-3|SEMA4G	nc|ENSG00000095539|Q9NTN9-3|SEMA4G	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.2891845703125	2	468.256508	934.498464	0.08664	4.057E-05	-2.0734	-0.0009709	-1.9868	-0.00093033	468.2556097129229	72.996	0.75365	72.996	72.639	73.392	0					45	26	2	0	0	0	0.34218	1	18706	18706		9.3474	0	1	122650			35742	12606	21041	21042	43219	43219					0.0285943633180068
QPGHQFCNKW	10	Unmodified	_QPGHQFCNKW_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.2208557128906	3	415.52583	1243.55566	0.092935	3.8617E-05	0.86431	0.00035915	0.95725	0.00039776	415.5262188886509	16.116	0.65239	16.053	15.73	16.382	-0.062534					55	22	4	0	0	0	0.32143	1	1139	1139		1.5923	0.37745	1	94142			35743	8391	21042	21043	43220	43220					-0.05637464454162
QPGHQFCNKW	10	Unmodified	_QPGHQFCNKW_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	415.52583	1243.55566	0.048524	2.0163E-05	0.59341	0.00024658	0.64193	0.00026674	415.52640447568905	16.266	0.80136	16.152	15.866	16.667	-0.11434	0.049269	-0.00021883	NaN	1.5923	59	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85915			35744	8391	21042	21043							-0.05637464454162
QPGREFLK	8	Unmodified	_QPGREFLK_					0	0	0		ENSG00000154783|ENST00000285046|FGD5;nc|ENSG00000154783|Q6ZNL6-2|FGD5	ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.3027648925781	2	487.774534	973.534515	0.041971	2.0472E-05	-0.1178	-5.746E-05	-0.075829	-3.6988E-05	487.77424711269344	30.016	0.47198	30.043	29.637	30.109	0.027157					23	15	2	0	0	0	0.34092	1	5353	5353		13.508	0	1	55052			35745	5145	21043	21044	43221	43221					0.04668893508664951
QPGRREMHLR	10	Unmodified	_QPGRREMHLR_					0	0	0		ENST00000305123.5_1_2:227663679-227663853:-|nuORF	ENST00000305123.5_1_2:227663679-227663853:-|nuORF	ENST00000305123.5_1_2:227663679-227663853:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.9417724609375	3	427.231529	1278.67276	0.37215	0.00015899	-0.98987	-0.0004229	-0.61773	-0.00026391	427.23112635026155	37.327	0.11186	37.327	37.285	37.397	0					5	3	2	0	0	0	0.32082	1	7690	7690		1.5923	0	1	64247			35746	9262	21044	21045	43222	43222					0.044566934854628926
QPHADRRREI	10	Unmodified	_QPHADRRREI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.56536865234375	3	426.565565	1276.67486	-0.39381	-0.00016799	0.0072	3.0713E-06	-0.38661	-0.00016492	426.56552204560666	13.457	0.32431	13.457	13.336	13.66	0					29	10	4	0	0	0	0.40262	1	445	445		3.0723	1.6171	1	171270			35747	4544	21045	21046	43223	43223					0.047594454949376086
QPHADRRREI	10	Unmodified	_QPHADRRREI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	426.565565	1276.67486	-0.39381	-0.00016799	0.0072	3.0713E-06	-0.38661	-0.00016492	426.56552204560666	13.457	0.32431	13.457	13.336	13.66	0	-0.013656	2.9875E-05	NaN	3.0723	29	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171270			35748	4544	21045	21046							0.047594454949376086
QPHADRRREI	10	Unmodified	_QPHADRRREI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	426.565565	1276.67486	-0.44666	-0.00019053	-0.00054345	-2.3182E-07	-0.4472	-0.00019076	426.56555944213807	13.563	0.48931	13.464	13.306	13.795	-0.099291	-0.0066159	1.9966E-05	NaN	3.0723	45	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140850			35749	4544	21045	21046							0.047594454949376086
QPHADRRREI	10	Unmodified	_QPHADRRREI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	426.565565	1276.67486	-0.4194	-0.0001789	-0.040955	-1.747E-05	-0.46035	-0.00019637	426.5655508617711	13.558	0.47007	13.491	13.359	13.829	-0.067496	0.020272	-3.1748E-05	NaN	3.0723	39	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161980			35750	4544	21045	21046							0.047594454949376086
QPHIGLAPAAF	11	Unmodified	_QPHIGLAPAAF_					0	0	0		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.267822265625	2	561.308741	1120.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.47	1	114.49	113.99	114.99	0.016708								0	0	0	0.38071	1	29767	29767		1.4819	0	1				35751	3799	21046	21047	43224	43224					0.0474513808849224
QPHLVNIQF	9	Unmodified	_QPHLVNIQF_					0	0	0		ENST00000502562.5_1_4:145954424-146019337:-|nuORF;ENST00000514704.5_1_4:146002810-146018845:-|nuORF;ENST00000507134.5_1_4:146002810-146018667:-|nuORF;ENST00000511466.5_1_4:145916712-146017251:-|nuORF;ENST00000506851.5_1_4:145888309-146017251:-|nuORF;ENST00000508087.5_1_4:145985483-146017251:-|nuORF;ENST00000510270.5_1_4:145920431-146018845:-|nuORF;ENSG00000164162|ENST00000507656|ANAPC10	ENST00000502562.5_1_4:145954424-146019337:-|nuORF	ENST00000502562.5_1_4:145954424-146019337:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.300537109375	2	548.300916	1094.58728	0.69555	0.00038137	-1.8628	-0.0010214	-1.1673	-0.00064002	548.299662516002	58.708	0.8349	58.694	58.278	59.113	-0.014271					63	29	3	0	0	0	0.027237	1	14241	14241		61.357	9.0891	1	783900			35752	11277	21047	21048	43225	43225					0.04376851571464613
QPHQVEQTEL	10	Unmodified	_QPHQVEQTEL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.79931640625	2	604.798934	1207.58332	0.29768	0.00018004	-0.10998	-6.6515E-05	0.1877	0.00011352	604.7989313313776	28.558	0.48241	28.558	28.277	28.76	0					23	16	2	0	0	0	0.15473	1	4987	4987		38.176	0.20157	1	166500			35753	3869	21048	21049	43226	43226					-0.012172827129006691
QPHQVEQTEL	10	Unmodified	_QPHQVEQTEL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.798583984375	2	604.798934	1207.58332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.56	1	28.56	28.06	29.06	0.0004673								0	0	0	0.12576	1	4994	4994		49.554	9.6046	1				35754	3869	21048	21049	43227	43227					-0.012172827129006691
QPHVGQKEV	9	Unmodified	_QPHVGQKEV_					0	0	0		ENSG00000112182|ENST00000257749|BACH2	ENSG00000112182|ENST00000257749|BACH2	ENSG00000112182|ENST00000257749|BACH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.27496337890625	2	511.274898	1020.53524	0.38737	0.00019805	0.094979	4.856E-05	0.48235	0.00024661	511.2747800424002	20.49	0.92864	20.49	20.18	21.108	0					122	32	5	0	0	0	0.23767	2	2618	2618;2725		18.146	1.9972	1	1126500			35755	2419	21049	21050	43228;43229	43228					0.025796881577207387
QPIDNVSRNLL	11	Unmodified	_QPIDNVSRNLL_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.8517456054688	2	634.851501	1267.68845	0.29949	0.00019013	-0.015142	-9.6127E-06	0.28435	0.00018052	634.8515321232996	51.899	0.47482	51.899	51.676	52.151	0					37	17	3	0	0	0	0.16642	1	12161	12161		34.222	24.839	1	462960			35756	5889	21050	21051	43230	43230					0.06531258483551028
QPIDNVSRNLL	11	Unmodified	_QPIDNVSRNLL_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	634.851501	1267.68845	0.4988	0.00031666	-0.040484	-2.5701E-05	0.45831	0.00029096	634.8515635786241	51.821	0.44334	51.869	51.726	52.17	0.048294	-0.045551	-8.4768E-05	NaN	34.222	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	489870			35757	5889	21050	21051							0.06531258483551028
QPIDNVSRNLL	11	Unmodified	_QPIDNVSRNLL_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	634.851501	1267.68845	0.32857	0.00020859	0.097091	6.1638E-05	0.42566	0.00027023	634.851517028509	51.978	0.5378	51.977	51.736	52.274	-0.00080872	0.062053	8.9911E-05	NaN	34.222	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	444120			35758	5889	21050	21051							0.06531258483551028
QPIKESNSL	9	Unmodified	_QPIKESNSL_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.274658203125	2	508.274564	1014.53457	-0.14941	-7.5943E-05	1.6798	0.00085379	1.5304	0.00077785	508.2745327544164	25.238	0.65281	25.206	24.89	25.543	-0.03141					58	22	4	0	0	0	0.23235	1	3985	3985		21.537	4.4241	1	213990			35759	5566	21051	21052	43231	43231					0.027888487179893673
QPIKESNSL	9	Unmodified	_QPIKESNSL_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	508.274564	1014.53457	0.24707	0.00012558	0.95128	0.00048351	1.1983	0.00060909	508.27428628565883	25.16	0.4869	25.16	24.958	25.445	0	-0.017024	-0.00039473	NaN	38.176	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211170			35760	5566	21051	21052							0.027888487179893673
QPIKESNSL	9	Unmodified	_QPIKESNSL_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	508.274564	1014.53457	0.078958	4.0132E-05	1.1799	0.00059974	1.2589	0.00063987	508.77692437066946	25.22	0.54142	25.165	24.972	25.514	-0.055931	-0.012368	-0.00016228	NaN	38.176	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273190			35761	5566	21051	21052							0.027888487179893673
QPILRFLQL	9	Unmodified	_QPILRFLQL_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.349853515625	2	564.350409	1126.68626	0.27288	0.000154	-1.1719	-0.00066138	-0.89905	-0.00050738	564.3493123170472	75.317	0.5797	75.317	75.012	75.592	0					57	20	4	0	0	0	0.017391	2	19368	19323;19368		68.081	35.775	1	821660			35762	1468;3087;4931	21052	21053	43232;43233	43233					0.12798874536383664
QPILRFLQL	9	Unmodified	_QPILRFLQL_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3496704101562	2	564.350409	1126.68626	0.42279	0.0002386	-1.3335	-0.00075255	-0.91069	-0.00051395	564.3493166277971	75.295	0.62128	75.347	75.024	75.646	0.052368					53	22	3	0	0	0	0.027237	2	19309	19309;19357		61.357	29.052	1	856160			35763	1468;3087;4931	21052	21053	43234;43235	43234					0.12798874536383664
QPILRFLQL	9	Unmodified	_QPILRFLQL_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1	ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-4|ITPR1	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.349609375	2	564.350409	1126.68626	0.45438	0.00025643	-1.3848	-0.00078149	-0.93039	-0.00052507	564.3491208376006	75.37	0.55315	75.338	75.084	75.637	-0.031479					54	20	4	0	0	0	0.027237	1	19348	19348		61.357	29.052	1	771520			35764	1468;3087;4931	21052	21053	43236	43236					0.12798874536383664
QPINFSVSL	9	Unmodified	_QPINFSVSL_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.29229736328125	2	502.7742	1003.53385	0.41071	0.0002065	1.6224	0.0008157	2.0331	0.0010222	502.7752587784436	72.598	1.4547	72.652	72.27	73.725	0.053841					82	51	3	0	0	0	0.047483	1	18507	18507		53.833	3.8998	1	414570			35765	4810	21053	21054	43237	43237					0.032220540689422705
QPINFSVSL	9	Unmodified	_QPINFSVSL_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2922668457031	2	502.7742	1003.53385	0.46667	0.00023463	1.5876	0.00079822	2.0543	0.0010329	502.77502842210777	72.69	0.94879	72.661	72.396	73.345	-0.029305					62	33	3	0	0	0	0.079752	1	18541	18541		41.84	0	1	358430			35766	4810	21053	21054	43238	43238					0.032220540689422705
QPISKDDFRR	10	Unmodified	_QPISKDDFRR_					0	0	0		ENSG00000172497|ENST00000307624|ACOT12	ENSG00000172497|ENST00000307624|ACOT12	ENSG00000172497|ENST00000307624|ACOT12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7217712402344	3	421.226438	1260.65748	-0.067846	-2.8578E-05	-2.0501	-0.00086354	-2.1179	-0.00089211	421.2263638928182	24.873	0.16794	24.873	24.762	24.93	0					6	5	2	0	0	0	0.32148	1	3898	3898		1.4551	0.38366	1	29053			35767	6640	21054	21055	43239	43239					0.03758105169254122
QPITPGPSI	9	Unmodified	_QPITPGPSI_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A;ENST00000602503.1_1_1:23408727-23408946:+|nuORF	nc|ENSG00000004487|O60341|KDM1A;ENST00000602503.1_1_1:23408727-23408946:+|nuORF	nc|ENSG00000004487|O60341|KDM1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2557373046875	2	455.255643	908.496732	0.23432	0.00010667	0.21661	9.8615E-05	0.45093	0.00020529	455.25579142362704	48.863	0.90586	48.863	48.528	49.434	0					55	32	2	0	0	0	0.023103	1	11257	11257		81.89	23.211	1	857470			35768	310;12266	21055	21056	43240	43240					0.03882382523192973
QPITPGPSI	9	Unmodified	_QPITPGPSI_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A;ENST00000602503.1_1_1:23408727-23408946:+|nuORF	nc|ENSG00000004487|O60341|KDM1A;ENST00000602503.1_1_1:23408727-23408946:+|nuORF	nc|ENSG00000004487|O60341|KDM1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.25604248046875	2	455.255643	908.496732	0.29171	0.0001328	0.16445	7.4867E-05	0.45616	0.00020767	455.2557175323992	48.798	0.91838	48.843	48.571	49.489	0.044891					60	32	3	0	0	0	0.0057766	1	11203	11203		78.728	28.795	1	1150600			35769	310;12266	21055	21056	43241	43241					0.03882382523192973
QPITPGPSI	9	Unmodified	_QPITPGPSI_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A;ENST00000602503.1_1_1:23408727-23408946:+|nuORF	nc|ENSG00000004487|O60341|KDM1A;ENST00000602503.1_1_1:23408727-23408946:+|nuORF	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.25579833984375	2	455.255643	908.496732	0.077524	3.5293E-05	0.25751	0.00011723	0.33503	0.00015252	455.25581268142736	48.83	0.86177	48.862	48.522	49.383	0.032043					56	30	2	0	0	0	0.004681	1	11217	11217		88.954	30.275	1	1098000			35770	310;12266	21055	21056	43242	43242					0.03882382523192973
QPKEYLPY	8	Unmodified	_QPKEYLPY_					0	0	0		ENSG00000132464|ENST00000396073|ENAM	ENSG00000132464|ENST00000396073|ENAM	ENSG00000132464|ENST00000396073|ENAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.77685546875	2	519.26875	1036.52295	0.21826	0.00011334	2.4659	0.0012805	2.6842	0.0013938	519.7716540478048	69.562	0.42598	69.54	69.378	69.804	-0.022087					23	15	2	0	0	0	0.32886	1	17536	17536		15.847	1.9411	1	164810			35771	3635	21056	21057	43243	43243					0.006146516946728298
QPKLPLFF	8	Unmodified	_QPKLPLFF_					0	0	0			REV__ENST00000542055.5_1_12:7507707-7510097:-|nuORF	REV__ENST00000542055.5_1_12:7507707-7510097:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7928771972656	2	495.294571	988.574589	0.0081612	4.0422E-06	0.12089	5.9878E-05	0.12905	6.392E-05	495.2946693614354	13.947	0.34923	13.881	13.687	14.037	-0.066068					18	11	2	0	0	0	0.344	1	585	585		2.5775	0	1	140760	+		35772	20815	21057	21058	43244	43244					0.07984440179245667
QPKQIARRP	9	Unmodified	_QPKQIARRP_					0	0	0			REV__nc|ENSG00000283154|B3KU38-2|IQCJ-SCHIP1	REV__nc|ENSG00000283154|B3KU38-2|IQCJ-SCHIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8251953125	2	547.333082	1092.65161	0.30094	0.00016472	-0.18099	-9.9061E-05	0.11995	6.5654E-05	547.3328858504722	29.731	0.37332	29.744	29.507	29.88	0.013474					17	12	2	0	0	0	0.25526	1	5279	5279		7.9102	1.187	1	83449	+		35773	23237	21058	21059	43245	43245					0.10899051448268438
QPLAPSGLTL	10	Unmodified	_QPLAPSGLTL_					0	0	0		ENST00000476218.1_1_7:75508475-75509583:+|nuORF;ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2	ENST00000476218.1_1_7:75508475-75509583:+|nuORF	ENST00000476218.1_1_7:75508475-75509583:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7897033691406	2	498.78985	995.565146	0.55097	0.00027482	0.012544	6.2568E-06	0.56352	0.00028108	498.7897869809118	65.628	0.99309	65.628	65.218	66.211	0					75	33	4	0	0	0	0.02128	1	16383	16383		70.332	14.155	1	1283400			35774	339	21059	21060	43246	43246					0.06718627103043673
QPLAPSGLTL	10	Unmodified	_QPLAPSGLTL_					0	0	0		ENST00000476218.1_1_7:75508475-75509583:+|nuORF;ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2	ENST00000476218.1_1_7:75508475-75509583:+|nuORF	ENST00000476218.1_1_7:75508475-75509583:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7896728515625	2	498.78985	995.565146	0.28053	0.00013993	0.037838	1.8873E-05	0.31837	0.0001588	498.78990935609306	65.518	1.0046	65.607	65.164	66.169	0.088882					75	36	3	0	0	0	0.018862	1	16338	16338		72.968	7.7329	1	1136000			35775	339	21059	21060	43247	43247					0.06718627103043673
QPLAPSGLTL	10	Unmodified	_QPLAPSGLTL_					0	0	0		ENST00000476218.1_1_7:75508475-75509583:+|nuORF;ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2	ENST00000476218.1_1_7:75508475-75509583:+|nuORF	ENST00000476218.1_1_7:75508475-75509583:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.78985595703125	2	498.78985	995.565146	0.48378	0.0002413	0.098515	4.9138E-05	0.58229	0.00029044	498.789790820327	65.63	0.91756	65.619	65.175	66.093	-0.011337					70	32	4	0	0	0	0.027406	1	16356	16356		63.961	9.187	1	1260200			35776	339	21059	21060	43248	43248					0.06718627103043673
QPLCRLAF	8	Unmodified	_QPLCRLAF_					0	0	0		ENST00000305626.5_1_4:140374983-140375085:+|nuORF	ENST00000305626.5_1_4:140374983-140375085:+|nuORF	ENST00000305626.5_1_4:140374983-140375085:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.72998046875	2	474.260205	946.505857	0.23337	0.00011068	-0.56906	-0.00026988	-0.33568	-0.0001592	474.2597202849346	51.57	0.7737	51.58	51.297	52.07	0.0095673					63	28	3	0	0	0	0.34092	1	11999	11999		13.508	0	1	1265000			35777	9266	21060	21061	43249	43249					0.030464526078617382
QPLDPRKTIF	10	Unmodified	_QPLDPRKTIF_					0	0	0		CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5677490234375	3	405.567912	1213.68191	-0.43258	-0.00017544	-0.15765	-6.3938E-05	-0.59023	-0.00023938	405.56800647715784	35.33	1.4647	35.406	34.788	36.252	0.075306					156	52	5	0	0	0	0.35961	1	7052	7052		10.899	0	1	3463300			35778	241	21061	21062	43250	43250					0.0836136532279852
QPLEEEESNL	10	Unmodified	_QPLEEEESNL_					0	0	0		ENSG00000100523|ENST00000673822|DDHD1;ENST00000557445.1_1_14:53570389-53619075:-|nuORF;nc|ENSG00000100523|Q8NEL9-2|DDHD1;nc|ENSG00000100523|Q8NEL9-4|DDHD1	ENSG00000100523|ENST00000673822|DDHD1	ENSG00000100523|ENST00000673822|DDHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.2767333984375	2	594.274958	1186.53536	0.55652	0.00033073	1.6551	0.00098361	2.2117	0.0013143	594.2760953728157	36.154	0.61348	36.154	35.719	36.332	0					34	22	2	0	0	0	0.21126	1	7323	7323		31.268	3.6395	1	427010			35779	1606	21062	21063	43251	43251					-0.050444014236063595
QPLEQNQTI	9	Unmodified	_QPLEQNQTI_					0	0	0		ENSG00000163848|ENST00000360647|ZNF148;ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ZNF148|p.Q640Sfs*7|1|0.36|ENSG00000163848|chr3:125232809-125232809|A/-|frameshift_variant	ENSG00000163848|ENST00000360647|ZNF148	ENSG00000163848|ENST00000360647|ZNF148	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7778930664062	2	535.77747	1069.54039	0.33577	0.0001799	2.8425	0.0015229	3.1782	0.0017028	535.7782991175807	38.372	0.7049	38.372	38.007	38.711	0					53	24	3	0	0	0	0.074552	1	8008	8008		43.772	16.549	1	450460			35780	5744	21063	21064	43252	43252					0.008399472296559907
QPLEQNQTI	9	Unmodified	_QPLEQNQTI_					0	0	0		ENSG00000163848|ENST00000360647|ZNF148;ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ZNF148|p.Q640Sfs*7|1|0.36|ENSG00000163848|chr3:125232809-125232809|A/-|frameshift_variant	ENSG00000163848|ENST00000360647|ZNF148	ENSG00000163848|ENST00000360647|ZNF148	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.3442993164062	2	535.77747	1069.54039	0.47501	0.0002545	1.7672	0.00094682	2.2422	0.0012013	535.7774196159986	38.305	0.88218	38.402	37.768	38.65	0.097527					57	31	3	0	0	0	0.16853	1	7980	7980		38.176	13.502	1	385390			35781	5744	21063	21064	43253	43253					0.008399472296559907
QPLEVEEKLS	10	Unmodified	_QPLEVEEKLS_					0	0	0		ENSG00000115993|ENST00000332624|TRAK2	ENSG00000115993|ENST00000332624|TRAK2	ENSG00000115993|ENST00000332624|TRAK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3350219726562	2	586.313886	1170.61322	0.62253	0.000365	-2.0076	-0.0011771	-1.3851	-0.0008121	586.3120840612	55.058	0.079697	55.058	55.008	55.088	0					4	2	2	0	0	0	0.31237	1	13127	13127		4.5289	0	1	98311			35782	2694	21064	21065	43254	43254					0.03473656232426947
QPLFLHPI	8	Unmodified	_QPLFLHPI_					0	0	0		HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|12|1|sense	HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|12|1|sense	HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|12|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7710876464844	2	482.78437	963.554188	0.44008	0.00021247	0.22153	0.00010695	0.66161	0.00031942	482.78446000410713	66.017	1.6142	66.101	65.541	67.156	0.083832					152	58	3	0	0	0	0.42758	1	16766	16766		13.508	0.97634	1	12245000			35783	12398	21065	21066	43255	43255					0.07095269519413705
QPLGAPEF	8	Unmodified	_QPLGAPEF_					0	0	0			REV__ZNF236|p.A950Hfs*33|1|0.2|ENSG00000130856|chr18:76912291-76912291|G/-|frameshift_variant	REV__ZNF236|p.A950Hfs*33|1|0.2|ENSG00000130856|chr18:76912291-76912291|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.2383117675781	2	429.721436	857.428318	-0.071857	-3.0878E-05	0.090259	3.8786E-05	0.018402	7.9078E-06	429.7214173901549	37.639	0.87503	37.737	37.503	38.378	0.097527					58	31	3	0	0	0	0.33245	1	7900	7900		19.439	2.4967	1	430810	+		35784	15487	21066	21067	43256	43256					-0.006098620566717727
QPLKEQPA	8	Unmodified	_QPLKEQPA_					0	0	0		nc|ENSG00000211751|P01850|TRBC1;nc|ENSG00000211772|A0A5B9|TRBC2	nc|ENSG00000211751|P01850|TRBC1	nc|ENSG00000211751|P01850|TRBC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.241943359375	2	455.753267	909.491981	-0.12265	-5.5899E-05	0.48263	0.00021996	0.35998	0.00016406	455.7531818791019	14.563	0.4081	14.458	14.273	14.681	-0.10466					24	13	2	0	0	0	0.344	1	734	734		2.5775	0	1	42791			35785	12926	21067	21068	43257	43257					0.03361498380411376
QPLKKLVSF	9	Unmodified	_QPLKKLVSF_					0	0	0		ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2352294921875	2	530.331685	1058.64882	0.51618	0.00027375	-0.14751	-7.823E-05	0.36867	0.00019552	530.331506653614	42.121	0.47787	42.207	42.009	42.487	0.085197					31	16	3	0	0	0	0.24289	1	9118	9118		18.146	12.916	1	321700			35786	6109	21068	21069	43258	43258					0.12183783270756976
QPLLNHPLSP	10	Unmodified	_QPLLNHPLSP_					0	0	0			REV__ENST00000520832.1_2_8:22250384-22250477:+|nuORF	REV__ENST00000520832.1_2_8:22250384-22250477:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3340454101562	2	558.314023	1114.61349	0.16197	9.0431E-05	-1.6469	-0.0009195	-1.485	-0.00082907	558.314830158268	27.234	0.13319	27.223	27.132	27.266	-0.01156					7	4	2	0	0	0	0.35231	1	4588	4588		12.241	0	1	43619	+		35787	21890	21069	21070	43259	43259					0.06077120742929765
QPLLPQQPVFV	11	Unmodified	_QPLLPQQPVFV_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;ENST00000567163.5_1_15:75651578-75652319:-|nuORF;ENST00000565683.5_2_15:75651481-75651713:-|nuORF;ENST00000563368.5_1_15:75650962-75652298:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENST00000563368.5_1_15:75650962-75652298:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3687744140625	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.28	1	113.28	112.78	113.78	0								0	0	0	0.38126	1	29424	29424		1.1933	0.66858	1				35788	4301;11929	21070	21071	43260	43260					0.0961882249964674
QPLLPQQPVFV	11	Unmodified	_QPLLPQQPVFV_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;ENST00000567163.5_1_15:75651578-75652319:-|nuORF;ENST00000565683.5_2_15:75651481-75651713:-|nuORF;ENST00000563368.5_1_15:75650962-75652298:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENST00000563368.5_1_15:75650962-75652298:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3683471679688	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.51	1	118.51	118.01	119.01	0								0	0	0	0.38126	1	30611	30611		1.1933	0.66858	1				35789	4301;11929	21070	21071	43261	43261					0.0961882249964674
QPLLRCLARGR	11	Unmodified	_QPLLRCLARGR_					0	0	0			REV__ENST00000526142.5_1_11:419653-429752:-|nuORF	REV__ENST00000526142.5_1_11:419653-429752:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8834228515625	2	641.879873	1281.74519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.11	1	101.11	100.61	101.61	-0.0054703								0	0	0	0.37501	1	27008	27008		2.7352	1.0826	1		+		35790	21960	21071	21072	43262	43262					0.11559027559042079
QPLLREVL	8	Unmodified	_QPLLREVL_					0	0	0		ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4;ENSG00000103061|ENST00000263997|SLC7A6OS	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	ENST00000474100.1_1_1:151372658-151373852:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.30047607421875	2	484.300384	966.586216	0.34572	0.00016743	0.004178	2.0234E-06	0.3499	0.00016946	484.3003784571616	53.169	1.367	53.159	52.837	54.204	-0.0096092					81	50	3	0	0	0	0.26862	1	12552	12552		34.402	3.7652	1	1854200			35791	1806	21072	21073	43263	43263					0.10158637202562204
QPLNQWPEQ	9	Unmodified	_QPLNQWPEQ_					0	0	0		ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8239135742188	2	570.277638	1138.54072	0.12514	7.1362E-05	0.91212	0.00052016	1.0373	0.00059153	570.2780569787114	14.966	0.33621	14.856	14.646	14.982	-0.10982					19	11	2	0	0	0	0.26168	1	875	875		1.8442	0	1	57572			35792	8658	21073	21074	43264	43264					-0.023006330504813377
QPLNQWPEQ	9	Unmodified	_QPLNQWPEQ_					0	0	0		ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	ENSG00000261308|ENST00000618634|FIGNL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8232421875	2	570.277638	1138.54072	-0.054216	-3.0918E-05	0.44393	0.00025317	0.38972	0.00022225	570.2783123374868	14.949	0.28304	14.885	14.73	15.013	-0.064413					21	9	3	0	0	0	0.26168	1	880	880		1.8442	0	1	61779			35793	8658	21073	21074	43265	43265					-0.023006330504813377
QPLPVILHV	9	Unmodified	_QPLPVILHV_					0	0	0		ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ATF7IP|p.S888Lfs*22|1|0.46|ENSG00000171681|chr12:14460997-14460997|T/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.810791015625	2	508.318577	1014.6226	0.46621	0.00023699	-0.037049	-1.8833E-05	0.42917	0.00021815	508.3187250188288	63.732	1.1185	63.732	63.364	64.483	0					118	40	6	0	0	0	0.058686	4	15870	15803;15857;15870;15966		49.669	22.785	1	4626000			35794	61	21074	21075	43266;43267;43268;43269	43268					0.11587514099267082
QPLPVILHV	9	Unmodified	_QPLPVILHV_					0	0	0		ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ATF7IP|p.S888Lfs*22|1|0.46|ENSG00000171681|chr12:14460997-14460997|T/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8106384277344	2	508.318577	1014.6226	0.41909	0.00021303	-0.12306	-6.2556E-05	0.29603	0.00015048	508.3186531561172	63.626	1.195	63.722	63.39	64.585	0.095722					107	42	5	0	0	0	0.058686	5	15736	15736;15765;15806;15834;15884		49.669	24.995	1	4748900			35795	61	21074	21075	43270;43271;43272;43273;43274	43270					0.11587514099267082
QPLPVILHV	9	Unmodified	_QPLPVILHV_					0	0	0		ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;ATF7IP|p.S888Lfs*22|1|0.46|ENSG00000171681|chr12:14460997-14460997|T/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	ATF7IP|p.E1204Dfs*60|1|0.17|ENSG00000171681|chr12:14497871-14497871|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3190002441406	2	508.318577	1014.6226	0.46793	0.00023786	-0.036299	-1.8451E-05	0.43163	0.00021941	508.3187004047648	63.727	1.2577	63.718	63.351	64.609	-0.0085526					107	45	4	0	0	0	0.040195	4	15796	15796;15846;15863;15916		56.541	24.236	1	4492400			35796	61	21074	21075	43275;43276;43277;43278	43275					0.11587514099267082
QPLQIRPGVL	10	Unmodified	_QPLQIRPGVL_					0	0	0		nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3641357421875	2	560.84549	1119.67643	0.40683	0.00022817	0.048882	2.7415E-05	0.45571	0.00025558	560.8454590161584	40.346	0.63425	40.446	40.201	40.835	0.099407					53	22	3	0	0	0	0.31889	1	8698	8698		1.3295	0	1	1040700			35797	2309	21075	21076	43279	43279					0.12137686530991232
QPLRPVQL	8	Unmodified	_QPLRPVQL_					0	0	0			REV__ENST00000598519.1_1_19:55987989-55992892:+|nuORF	REV__ENST00000598519.1_1_19:55987989-55992892:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.7925720214844	2	475.792727	949.5709	0.27415	0.00013044	-0.88101	-0.00041918	-0.60686	-0.00028874	475.7925465815884	49.196	1.0193	49.196	48.773	49.793	0					84	36	4	0	0	0	0.25425	1	11307	11307		36.044	0	1	1024600	+		35798	22620	21076	21077	43280	43280					0.09409770405375184
QPLVEALIKEV	11	Unmodified	_QPLVEALIKEV_					0	0	0			REV__nc|ENSG00000006534|P43353-2|ALDH3B1	REV__nc|ENSG00000006534|P43353-2|ALDH3B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8875732421875	2	619.871371	1237.72819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.85	1	102.85	102.35	103.35	0								0	0	0	0.37609	1	27337	27337		2.4985	1.0166	1		+		35799	13362	21077	21078	43281	43281					0.11883385434202864
QPLVEALIKEV	11	Unmodified	_QPLVEALIKEV_					0	0	0			REV__nc|ENSG00000006534|P43353-2|ALDH3B1	REV__nc|ENSG00000006534|P43353-2|ALDH3B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8695068359375	2	619.871371	1237.72819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.08	1	112.08	111.58	112.58	0								0	0	0	0.37609	1	29143	29143		2.4985	1.0166	1		+		35800	13362	21077	21078	43282	43282					0.11883385434202864
QPLVEALIKEV	11	Unmodified	_QPLVEALIKEV_					0	0	0			REV__nc|ENSG00000006534|P43353-2|ALDH3B1	REV__nc|ENSG00000006534|P43353-2|ALDH3B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8683471679688	2	619.871371	1237.72819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.76	1	117.76	117.26	118.26	0								0	0	0	0.37609	1	30442	30442		2.4985	1.0166	1		+		35801	13362	21077	21078	43283	43283					0.11883385434202864
QPLVEALIKEV	11	Unmodified	_QPLVEALIKEV_					0	0	0			REV__nc|ENSG00000006534|P43353-2|ALDH3B1	REV__nc|ENSG00000006534|P43353-2|ALDH3B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8687133789062	2	619.871371	1237.72819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.69	1	118.69	118.19	119.19	0								0	0	0	0.37609	1	30650	30650		2.4985	1.0166	1		+		35802	13362	21077	21078	43284	43284					0.11883385434202864
QPLVEALIKEV	11	Unmodified	_QPLVEALIKEV_					0	0	0			REV__nc|ENSG00000006534|P43353-2|ALDH3B1	REV__nc|ENSG00000006534|P43353-2|ALDH3B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8689575195312	2	619.871371	1237.72819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.47	1	114.49	113.99	114.99	0.016708								0	0	0	0.37609	1	29769	29769		2.4985	1.0166	1		+		35803	13362	21077	21078	43285	43285					0.11883385434202864
QPNERLTLT	9	Unmodified	_QPNERLTLT_					0	0	0		ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.8109130859375	2	536.293288	1070.57202	0.45724	0.00024521	-0.44603	-0.00023921	0.011201	6.0068E-06	536.2930068901899	36.796	1.1459	36.883	36.595	37.741	0.08741					110	41	4	0	0	0	0.13748	1	7666	7666		32.786	7.7947	1	5084000			35804	7231	21078	21079	43286	43286					0.039559399836207376
QPNIEILEN	9	Unmodified	_QPNIEILEN_					0	0	0			REV__nc|ENSG00000084636|Q07092-2|COL16A1	REV__nc|ENSG00000084636|Q07092-2|COL16A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7982177734375	2	535.279846	1068.54514	0.57634	0.0003085	-1.6104	-0.00086204	-1.0341	-0.00055353	535.2789370073866	55.21	0.62105	55.21	54.943	55.564	0					37	22	2	0	0	0	0.23767	2	13186	13186;13236		18.146	1.0335	1	569840	+		35805	13949	21079	21080	43287;43288	43287					0.013608313724262189
QPNPLPLRL	9	Unmodified	_QPNPLPLRL_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.308349609375	2	524.319109	1046.62366	0.58302	0.00030569	-0.49961	-0.00026196	0.083408	4.3733E-05	524.3188126150123	57.495	0.76121	57.495	57.165	57.927	0					59	27	3	0	0	0	0.23007	4	13824	13824;13871;13887;13938		19.257	8.4331	1	981020			35806	1113	21080	21081	43289;43290;43291;43292	43289					0.10221728468172842
QPNPLPLRL	9	Unmodified	_QPNPLPLRL_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3082275390625	2	524.319109	1046.62366	0.47771	0.00025047	-0.34654	-0.0001817	0.13117	6.8776E-05	524.3189850886466	57.372	0.73589	57.457	57.104	57.84	0.085617					50	26	3	0	0	0	0.23007	4	13789	13789;13820;13830;13877		19.257	7.3224	1	1027800			35807	1113	21080	21081	43293;43294;43295;43296	43293					0.10221728468172842
QPNPLPLRL	9	Unmodified	_QPNPLPLRL_					0	0	0		nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	nc|ENSG00000078674|Q15154-2|PCM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.3193359375	2	524.319109	1046.62366	0.34525	0.00018102	0.13798	7.2346E-05	0.48323	0.00025336	524.3190907890996	57.501	0.70191	57.484	57.091	57.793	-0.0172					57	25	3	0	0	0	0.28674	2	13887	13887;13894		10.824	0	1	787270			35808	1113	21080	21081	43297;43298	43297					0.10221728468172842
QPNTTGKQL	9	Unmodified	_QPNTTGKQL_					0	0	0		ENSG00000092820|ENST00000367075|EZR;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;EZR|p.N186Kfs*6|1|0.25|ENSG00000092820|chr6:158783657-158783660|AGCA/-|frameshift_variant;nc|ENSG00000137710|P35241-3|RDX;ENSG00000147065|ENST00000360270|MSN	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7669982910156	2	493.766906	985.519259	0.19812	9.7825E-05	-1.3239	-0.0006537	-1.1258	-0.00055588	493.7666777491995	17.307	0.68941	17.189	16.884	17.573	-0.11739					71	24	5	0	0	0	0.19905	1	1570	1570		23.79	7.9426	1	153960			35809	1426	21081	21082	43299	43299					0.025919819208070294
QPNTTGKQL	9	Unmodified	_QPNTTGKQL_					0	0	0		ENSG00000092820|ENST00000367075|EZR;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;EZR|p.N186Kfs*6|1|0.25|ENSG00000092820|chr6:158783657-158783660|AGCA/-|frameshift_variant;nc|ENSG00000137710|P35241-3|RDX;ENSG00000147065|ENST00000360270|MSN	ENSG00000092820|ENST00000367075|EZR	ENSG00000092820|ENST00000367075|EZR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.766906	985.519259	0.36704	0.00018123	-0.44204	-0.00021827	-0.075	-3.7032E-05	493.7666111013558	17.138	0.60962	17.138	16.867	17.477	0	-0.0049077	8.7484E-05	NaN	23.79	55	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129670			35810	1426	21081	21082							0.025919819208070294
QPNYKIAV	8	Unmodified	_QPNYKIAV_					0	0	0			REV__ENSG00000138678|ENST00000264409|GPAT3	REV__ENSG00000138678|ENST00000264409|GPAT3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.77392578125	2	466.763635	931.512717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.288	1	13.22	12.72	13.72	-0.067496								0	0	0	0.37664	1	379	379		2.5775	0.27475	1		+		35811	15945	21082	21083	43300	43300					0.04422088760088627
QPPKTRRTSSL	11	Unmodified	_QPPKTRRTSSL_					0	0	0		ENSG00000185448|ENST00000346193|FAM47A	ENSG00000185448|ENST00000346193|FAM47A	ENSG00000185448|ENST00000346193|FAM47A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.0813293457031	3	424.245721	1269.71533	-0.17014	-7.2181E-05	0.14689	6.2317E-05	-0.023252	-9.8644E-06	424.2458012300494	27.223	0.43839	27.223	27.035	27.474	0					26	14	2	0	0	0	0.36943	1	4568	4568		8.7518	0.46535	1	166850			35812	7534	21083	21084	43301	43301					0.09126367094700072
QPPLNRLNC	9	Unmodified	_QPPLNRLNC_					0	0	0			REV__ENST00000496238.5_1_2:113300301-113305728:+|nuORF	REV__ENST00000496238.5_1_2:113300301-113305728:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2828369140625	2	527.776751	1053.53895	0.41026	0.00021653	-1.1279	-0.00059526	-0.71761	-0.00037874	527.7759818595422	17.646	0.4877	17.586	17.384	17.872	-0.060429					29	16	2	0	0	0	0.26168	1	1688	1688		1.8442	0.19162	1	34011	+		35813	15272	21084	21085	43302	43302					0.014320346599106415
QPPMPAQRRGL	11	Unmodified	_QPPMPAQRRGL_					0	0	0		SMARCD2|p.L424Wfs*27|1|0.37|ENSG00000108604|chr17:63833635-63833635|A/-|frameshift_variant;nc|ENSG00000108604|Q92925-3|SMARCD2;nc|ENSG00000108604|Q92925-2|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2	SMARCD2|p.L424Wfs*27|1|0.37|ENSG00000108604|chr17:63833635-63833635|A/-|frameshift_variant	SMARCD2|p.L424Wfs*27|1|0.37|ENSG00000108604|chr17:63833635-63833635|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.5752258300781	3	417.564396	1249.67136	0.030876	1.2893E-05	-1.4163	-0.00059141	-1.3855	-0.00057852	417.8982158861975	16.117	0.3182	16.054	15.917	16.235	-0.062534					16	10	2	0	0	0	0.33119	1	1202	1202		1.2148	0	1	33276			35814	2202	21085	21086	43303	43303					0.05651059396700475
QPPPTGEIPL	10	Unmodified	_QPPPTGEIPL_					0	0	0			REV__ENSG00000104626|ENST00000250263|ERI1	REV__ENSG00000104626|ENST00000250263|ERI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3070068359375	2	524.787307	1047.56006	0.63871	0.00033519	3.0275	0.0015888	3.6662	0.001924	524.7894993508628	90.636	0.20441	90.636	90.524	90.728	0.0003891					18	14	2	0	0	0	0.31581	1	24000	24000		11.495	3.5846	1	45035	+		35815	14413	21086	21087	43304	43304					0.03818323240443533
QPPPTGEIPL	10	Unmodified	_QPPPTGEIPL_					0	0	0			REV__ENSG00000104626|ENST00000250263|ERI1	REV__ENSG00000104626|ENST00000250263|ERI1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	524.787307	1047.56006	0.51246	0.00026893	2.8256	0.0014829	3.3381	0.0017518	525.2895378496274	90.431	0.10228	90.522	90.468	90.57	0.090675	-0.057051	-0.00014336	NaN	11.495	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38684	+		35816	14413	21086	21087							0.03818323240443533
QPPQYSTL	8	Unmodified	_QPPQYSTL_					0	0	0			REV__nc|ENSG00000162267|Q06033-2|ITIH3	REV__nc|ENSG00000162267|Q06033-2|ITIH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2227783203125	2	467.23745	932.460347	0.067499	3.1538E-05	0.68827	0.00032159	0.75577	0.00035313	467.2374779881367	53.931	0.94404	53.987	53.56	54.504	0.056255					103	35	4	0	0	0	0.41097	1	12891	12891		18.135	2.3668	1	2265100	+		35817	16969	21087	21088	43305	43305					-0.008584943735286288
QPPSILEI	8	Unmodified	_QPPSILEI_					0	0	0		ENSG00000106546|ENST00000242057|AHR;AHR|p.Q667Pfs*7|1|0.3|ENSG00000106546|chr7:17339823-17339824|-/C|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.7580261230469	2	448.758018	895.501483	0.27448	0.00012318	-0.41259	-0.00018515	-0.13811	-6.1976E-05	448.7578862067112	68.545	1.1965	68.545	68.202	69.398	0					92	43	3	0	0	0	0.021231	3	17243	17243;17288;17344		100.37	0	1	1285600			35818	2082	21088	21089	43306;43307;43308	43306					0.04955266665945146
QPPSILEI	8	Unmodified	_QPPSILEI_					0	0	0		ENSG00000106546|ENST00000242057|AHR;AHR|p.Q667Pfs*7|1|0.3|ENSG00000106546|chr7:17339823-17339824|-/C|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7581787109375	2	448.758018	895.501483	0.13042	5.8528E-05	-0.35794	-0.00016063	-0.22752	-0.0001021	448.75792275723745	68.517	1.2249	68.589	68.24	69.465	0.071945					94	44	3	0	0	0	0.021231	3	17211	17211;17260;17316		100.37	0	1	1359800			35819	2082	21088	21089	43309;43310;43311	43309					0.04955266665945146
QPPSILEI	8	Unmodified	_QPPSILEI_					0	0	0		ENSG00000106546|ENST00000242057|AHR;AHR|p.Q667Pfs*7|1|0.3|ENSG00000106546|chr7:17339823-17339824|-/C|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7580871582031	2	448.758018	895.501483	0.29482	0.0001323	-0.48697	-0.00021853	-0.19215	-8.6231E-05	448.7578583495266	68.553	1.2328	68.534	68.148	69.381	-0.019157					91	43	3	0	0	0	0.021231	2	17293	17234;17293		100.37	0	1	1059900			35820	2082	21088	21089	43312;43313	43313					0.04955266665945146
QPPSSLVI	8	Unmodified	_QPPSSLVI_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.7448425292969	2	420.744911	839.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.621	1	54.621	54.121	55.121	0								0	0	0	0.085432	1	12984	12984		64.236	0	1				35821	2125	21089	21090	43314	43314					0.04910997494471303
QPPSSLVI	8	Unmodified	_QPPSSLVI_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.7448425292969	2	420.744911	839.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.776	1	54.776	54.276	55.276	0								0	0	0	0.14479	1	13033	13033		53.576	0	1				35822	2125	21089	21090	43315	43315					0.04910997494471303
QPPSSLVI	8	Unmodified	_QPPSSLVI_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.7449035644531	2	420.744911	839.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.938	1	54.938	54.438	55.438	0								0	0	0	0.21415	1	13083	13083		42.095	0	1				35823	2125	21089	21090	43316	43316					0.04910997494471303
QPPSSLVI	8	Unmodified	_QPPSSLVI_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.7448425292969	2	420.744911	839.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.084	1	55.084	54.584	55.584	0								0	0	0	0.19909	1	13128	13128		44.407	0	1				35824	2125	21089	21090	43317	43317					0.04910997494471303
QPPSSLVI	8	Unmodified	_QPPSSLVI_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.7449951171875	2	420.744911	839.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.595	1	54.658	54.158	55.158	0.063202								0	0	0	0.049354	1	12977	12977		70.716	0	1				35825	2125	21089	21090	43318	43318					0.04910997494471303
QPPSSLVI	8	Unmodified	_QPPSSLVI_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.74481201171875	2	420.744911	839.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.76	1	54.824	54.324	55.324	0.063202								0	0	0	0.10685	1	13027	13027		60.39	0	1				35826	2125	21089	21090	43319	43319					0.04910997494471303
QPPSSLVI	8	Unmodified	_QPPSSLVI_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.7447814941406	2	420.744911	839.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.915	1	54.979	54.479	55.479	0.063202								0	0	0	0.10685	1	13075	13075		60.39	0	1				35827	2125	21089	21090	43320	43320					0.04910997494471303
QPPSSLVI	8	Unmodified	_QPPSSLVI_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.7447814941406	2	420.744911	839.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.072	1	55.14	54.64	55.64	0.067917								0	0	0	0.21415	1	13123	13123		42.095	0	1				35828	2125	21089	21090	43321	43321					0.04910997494471303
QPPSSLVI	8	Unmodified	_QPPSSLVI_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.7449645996094	2	420.744911	839.475269	0.35085	0.00014762	-0.2232	-9.3912E-05	0.12765	5.3708E-05	420.74467611140705	54.68	2.0203	54.664	54.17	56.19	-0.015923					153	73	3	0	0	0	0.065797	4	13033	12985;13033;13083;13134		70.716	0	1	2313700			35829	2125	21089	21090	43322;43323;43324;43325	43323					0.04910997494471303
QPPTYVRAQ	9	Unmodified	_QPPTYVRAQ_					0	0	0		nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF	nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-3|LMF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.8217163085938	2	530.282723	1058.55089	0.29118	0.00015441	2.4655	0.0013074	2.7567	0.0014618	530.2839125926372	15.758	1.0035	15.758	15.181	16.184	0					51	34	2	0	0	0	0.25988	1	1207	1207		3.9444	0.3479	1	85928			35830	1554	21090	21091	43326	43326					0.023959746747550525
QPQFQRQGL	9	Unmodified	_QPQFQRQGL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.2929077148438	2	551.293622	1100.57269	0.47915	0.00026415	-0.47603	-0.00026243	0.0031295	1.7253E-06	551.2933581642802	33.56	0.66424	33.56	33.174	33.839	0					53	23	3	0	0	0	0.079066	1	6508	6508		42.095	26.247	1	518320			35831	7466	21091	21092	43327	43327					0.02642779423331376
QPQFQRQGL	9	Unmodified	_QPQFQRQGL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2938232421875	2	551.293622	1100.57269	0.60284	0.00033234	-0.37701	-0.00020784	0.22583	0.0001245	551.2932763872368	33.358	0.60544	33.425	33.154	33.76	0.06636					49	21	3	0	0	0	0.0061338	3	6458	6458;6508;6550		85.357	50.955	1	623640			35832	7466	21091	21092	43328;43329;43330	43328					0.02642779423331376
QPQFQRQGL	9	Unmodified	_QPQFQRQGL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.2932739257812	2	551.293622	1100.57269	0.2318	0.00012779	-0.10825	-5.968E-05	0.12354	6.8108E-05	551.293463317496	33.356	0.71822	33.423	33.081	33.799	0.066704					40	25	2	0	0	0	0.013258	2	6455	6455;6504		74.423	46.794	1	599210			35833	7466	21091	21092	43331;43332	43331					0.02642779423331376
QPQHAFNAL	9	Unmodified	_QPQHAFNAL_					0	0	0		nc|ENSG00000164442|Q99967-2|CITED2;ENSG00000164442|ENST00000367651|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2610473632812	2	513.261791	1024.50903	-0.75398	-0.00038699	-0.44889	-0.0002304	-1.2029	-0.00061739	513.2605501684806	35.042	0.99198	35.042	34.5	35.492	0					103	35	5	0	0	0	0.079066	1	6989	6989		42.095	4.1206	1	635950			35834	5845	21092	21093	43333	43333					-0.0022458101377651474
QPQHAFNAL	9	Unmodified	_QPQHAFNAL_					0	0	0		nc|ENSG00000164442|Q99967-2|CITED2;ENSG00000164442|ENST00000367651|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2609252929688	2	513.261791	1024.50903	-0.83241	-0.00042725	-0.66386	-0.00034074	-1.4963	-0.00076798	513.2607011685775	35.038	1.0373	35.114	34.496	35.533	0.075306					105	37	4	0	0	0	0.062246	1	6963	6963		48.346	2.3249	1	749570			35835	5845	21092	21093	43334	43334					-0.0022458101377651474
QPQHAFNAL	9	Unmodified	_QPQHAFNAL_					0	0	0		nc|ENSG00000164442|Q99967-2|CITED2;ENSG00000164442|ENST00000367651|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	nc|ENSG00000164442|Q99967-2|CITED2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2608642578125	2	513.261791	1024.50903	-0.71814	-0.00036859	-0.83788	-0.00043005	-1.556	-0.00079864	513.2604433113146	34.976	1.1049	35.054	34.39	35.495	0.077377					86	39	3	0	0	0	0.12846	1	6959	6959		34.102	0	1	608180			35836	5845	21092	21093	43335	43335					-0.0022458101377651474
QPQHVSVSI	9	Unmodified	_QPQHVSVSI_					0	0	0			REV__ENSG00000137073|ENST00000379238|UBAP2	REV__ENSG00000137073|ENST00000379238|UBAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.25445556640625	2	497.769448	993.524344	0.14797	7.3654E-05	-0.43701	-0.00021753	-0.28904	-0.00014387	497.7691898964744	15.649	0.53042	15.649	15.232	15.763	0					25	17	2	0	0	0	0.25938	1	1038	1038		4.3292	0	1	48440	+		35837	15843	21093	21094	43336	43336					0.027322857834292336
QPQPKTSQ	8	Unmodified	_QPQPKTSQ_					0	0	0		nc|ENSG00000111837|P20794-3|MAK;nc|ENSG00000111837|P20794|MAK;ENSG00000111837|ENST00000354489|MAK	nc|ENSG00000111837|P20794-3|MAK	nc|ENSG00000111837|P20794-3|MAK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.79315185546875	2	457.240524	912.466495	0.19967	9.1297E-05	-0.77565	-0.00035466	-0.57598	-0.00026336	457.24012839728033	30.171	0.61274	30.171	29.86	30.473	0					33	21	2	0	0	0	0.34247	1	5580	5580		4.756	0	1	111250			35838	2393	21094	21095	43337	43337					0.0067602385800000775
QPQPKTSQ	8	Unmodified	_QPQPKTSQ_					0	0	0		nc|ENSG00000111837|P20794-3|MAK;nc|ENSG00000111837|P20794|MAK;ENSG00000111837|ENST00000354489|MAK	nc|ENSG00000111837|P20794-3|MAK	nc|ENSG00000111837|P20794-3|MAK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	457.240524	912.466495	-0.14957	-6.8389E-05	-0.81051	-0.0003706	-0.96007	-0.00043898	457.2401061363382	30.141	0.44103	30.168	29.923	30.364	0.027157	-0.0013934	-2.0247E-05	NaN	4.756	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109270			35839	2393	21094	21095							0.0067602385800000775
QPQQLLQVL	9	Unmodified	_QPQQLLQVL_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20;ENST00000534518.1_1_11:77024925-77025045:+|nuORF	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2796020507812	2	533.816399	1065.61824	0.51388	0.00027432	-0.60875	-0.00032496	-0.094876	-5.0646E-05	533.8164422885432	70.41	0.5847	70.41	70.183	70.768	0					44	20	3	0	0	0	0.11486	1	17860	17860		48.346	17.709	1	333350			35840	6747	21095	21096	43338	43338					0.08806004885695984
QPQQLLQVL	9	Unmodified	_QPQQLLQVL_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20;ENST00000534518.1_1_11:77024925-77025045:+|nuORF	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7716674804688	2	533.816399	1065.61824	0.36362	0.00019411	-0.60584	-0.00032341	-0.24222	-0.0001293	533.816460059704	70.405	0.50887	70.465	70.209	70.718	0.060783					44	17	3	0	0	0	0.2322	1	17871	17871		20.454	1.1966	1	232460			35841	6747	21095	21096	43339	43339					0.08806004885695984
QPQQLLQVL	9	Unmodified	_QPQQLLQVL_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20;ENST00000534518.1_1_11:77024925-77025045:+|nuORF	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2799682617188	2	533.816399	1065.61824	0.52026	0.00027772	-0.57014	-0.00030435	-0.049882	-2.6628E-05	533.8164555965952	70.473	0.47263	70.448	70.245	70.718	-0.024872					41	16	3	0	0	0	0.23784	1	17818	17818		19.257	6.2145	1	351560			35842	6747	21095	21096	43340	43340					0.08806004885695984
QPRAEPSAK	9	Unmodified	_QPRAEPSAK_					0	0	0			REV__ENSG00000100139|ENST00000215957|MICALL1	REV__ENSG00000100139|ENST00000215957|MICALL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.6739807128906	2	492.267073	982.519593	0.040126	1.9753E-05	-0.068343	-3.3643E-05	-0.028217	-1.389E-05	492.26707699941755	15.038	0.2817	14.974	14.846	15.128	-0.064413					13	9	2	0	0	0	0.25526	1	931	931		7.9102	0.62092	1	78943	+		35843	14164	21096	21097	43341	43341					0.027634016406636874
QPRAQDHPL	9	Unmodified	_QPRAQDHPL_					0	0	0		ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7536010742188	2	531.277972	1060.54139	0.41248	0.00021914	-0.39587	-0.00021032	0.016606	8.8226E-06	531.277759394503	16.674	0.69218	16.674	16.377	17.069	0					49	23	3	0	0	0	0.24913	1	1428	1428		12.532	0	1	277070			35844	10011	21097	21098	43342	43342					0.013542063892145961
QPRAQDHPL	9	Unmodified	_QPRAQDHPL_					0	0	0		ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7532348632812	2	531.277972	1060.54139	0.17712	9.4098E-05	-0.18361	-9.7547E-05	-0.0064905	-3.4483E-06	531.2778916994557	16.786	0.69246	16.671	16.421	17.114	-0.11434					51	24	3	0	0	0	0.19839	1	1466	1466		28.487	0	1	252690			35845	10011	21097	21098	43343	43343					0.013542063892145961
QPRAQDHPL	9	Unmodified	_QPRAQDHPL_					0	0	0		ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	ENST00000382734.9_1_22:25851689-25853254:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7535400390625	2	531.277972	1060.54139	0.47701	0.00025343	-0.37619	-0.00019986	0.10082	5.3565E-05	531.2777659990572	16.668	0.64667	16.605	16.351	16.997	-0.062534					53	22	3	0	0	0	0.19839	1	1433	1433		28.487	0	1	269880			35846	10011	21097	21098	43344	43344					0.013542063892145961
QPRAVRASQQ	10	Unmodified	_QPRAVRASQQ_					0	0	0		ENST00000437916.2_1_2:45150695-45166121:-|nuORF	ENST00000437916.2_1_2:45150695-45166121:-|nuORF	ENST00000437916.2_1_2:45150695-45166121:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8150634765625	2	570.815253	1139.61595	0.28885	0.00016488	-0.32828	-0.00018739	-0.039426	-2.2505E-05	570.8150921891857	21.465	0.56185	21.465	21.169	21.731	0					31	19	2	0	0	0	0.39227	1	2838	2838		4.897	0	1	100080			35847	10535	21098	21099	43345	43345					0.051729692006119876
QPRDFGDSL	9	Unmodified	_QPRDFGDSL_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7488403320312	2	517.748713	1033.48287	0.68043	0.00035229	-0.30477	-0.0001578	0.37566	0.0001945	517.7485891411374	37.019	0.83294	37.019	36.644	37.477	0					71	29	3	0	0	0	0.023967	2	7579	7579;7630		62.573	18.714	1	852110			35848	3405	21099	21100	43346;43347	43346					-0.03252894975889831
QPRDFGDSL	9	Unmodified	_QPRDFGDSL_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7489013671875	2	517.748713	1033.48287	0.40005	0.00020713	-0.056818	-2.9418E-05	0.34324	0.00017771	517.7486749746739	36.838	0.78939	36.925	36.682	37.471	0.08741					68	28	3	0	0	0	0.047483	2	7528	7528;7576		53.833	23.196	1	762610			35849	3405	21099	21100	43348;43349	43348					-0.03252894975889831
QPRDFGDSL	9	Unmodified	_QPRDFGDSL_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.748779296875	2	517.748713	1033.48287	0.56587	0.00029298	-0.13375	-6.9251E-05	0.43212	0.00022373	517.7486286562763	36.896	0.9121	36.989	36.661	37.573	0.093018					70	33	3	0	0	0	0.03069	1	7522	7522		60.074	16.216	1	925990			35850	3405	21099	21100	43350	43350					-0.03252894975889831
QPRDPVRPP	9	Unmodified	_QPRDPVRPP_					0	0	0		nc|ENSG00000159579|Q96DX4-2|RSPRY1;ENST00000566352.1_1_16:57238570-57238921:+|nuORF;RSPRY1|p.M489*|1|0.38|ENSG00000159579|chr16:57231255-57231255|A/-|frameshift_variant;ENSG00000159579|ENST00000394420|RSPRY1	nc|ENSG00000159579|Q96DX4-2|RSPRY1	nc|ENSG00000159579|Q96DX4-2|RSPRY1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7828369140625	2	531.296165	1060.57778	0.15975	8.4876E-05	-0.39967	-0.00021234	-0.23992	-0.00012747	531.2959202312614	22.822	0.61448	22.735	22.403	23.018	-0.087608					31	21	2	0	0	0	0.25779	1	3258	3258		6.2058	1.8765	1	75476			35851	5414	21100	21101	43351	43351					0.04991083285949571
QPRDPVRPP	9	Unmodified	_QPRDPVRPP_					0	0	0		nc|ENSG00000159579|Q96DX4-2|RSPRY1;ENST00000566352.1_1_16:57238570-57238921:+|nuORF;RSPRY1|p.M489*|1|0.38|ENSG00000159579|chr16:57231255-57231255|A/-|frameshift_variant;ENSG00000159579|ENST00000394420|RSPRY1	nc|ENSG00000159579|Q96DX4-2|RSPRY1	nc|ENSG00000159579|Q96DX4-2|RSPRY1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7826538085938	2	531.296165	1060.57778	0.34697	0.00018435	-0.19163	-0.00010181	0.15535	8.2536E-05	531.2961011503878	22.782	0.53254	22.738	22.501	23.033	-0.044867					30	18	2	0	0	0	0.25323	1	3229	3229		6.2058	2.2614	1	75832			35852	5414	21100	21101	43352	43352					0.04991083285949571
QPREPQVYTL	10	Unmodified	_QPREPQVYTL_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	615.8278198242188	2	615.827495	1229.64044	0.16622	0.00010236	-0.058825	-3.6226E-05	0.1074	6.6139E-05	615.8276165727066	44.049	1.9833	44.049	43.656	45.64	0					219	72	5	0	0	0	1.1871E-08	7	9731	9682;9731;9783;9832;9885;9933;10089		165.58	96.479	1	28878000			35853	12934	21101	21102	43353;43354;43355;43356;43357;43358;43359	43354					0.03480184563477451
QPREPQVYTL	10	Unmodified	_QPREPQVYTL_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	615.8277587890625	2	615.827495	1229.64044	0.18808	0.00011583	-0.069257	-4.265E-05	0.11882	7.3175E-05	615.8275627448455	43.827	2.2369	43.904	43.515	45.752	0.077515					222	81	5	0	0	0	4.613E-09	5	9649	9603;9649;9694;9742;9790		174.48	105.38	1	30168000			35854	12934	21101	21102	43360;43361;43362;43363;43364	43361					0.03480184563477451
QPREPQVYTL	10	Unmodified	_QPREPQVYTL_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	615.827392578125	2	615.827495	1229.64044	0.24303	0.00014966	-0.13198	-8.1275E-05	0.11105	6.8386E-05	615.827551341314	43.793	1.6443	43.877	43.522	45.166	0.083992					209	60	5	0	0	0	1.6475E-05	5	9593	9593;9641;9690;9739;9782		146.68	90.503	1	33182000			35855	12934	21101	21102	43365;43366;43367;43368;43369	43365					0.03480184563477451
QPRGNVDEEL	10	Unmodified	_QPRGNVDEEL_					0	0	0		ENST00000462906.1_1_3:195256593-195269923:-|nuORF;ENSG00000184203|ENST00000618156|PPP1R2	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7835693359375	2	578.783284	1155.55202	0.32009	0.00018526	0.20425	0.00011822	0.52435	0.00030348	578.7833716290646	28.918	0.71363	28.918	28.611	29.324	0					53	25	3	0	0	0	0.013578	2	5153	5102;5153		78.728	20.049	1	480480			35856	7435	21102	21103	43370;43371	43371					-0.01953855746978661
QPRGNVDEEL	10	Unmodified	_QPRGNVDEEL_					0	0	0		ENST00000462906.1_1_3:195256593-195269923:-|nuORF;ENSG00000184203|ENST00000618156|PPP1R2	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.783447265625	2	578.783284	1155.55202	0.28607	0.00016557	0.23494	0.00013598	0.521	0.00030155	578.7833101358956	28.888	0.62691	28.884	28.629	29.256	-0.0042572					45	21	3	0	0	0	0.063936	1	5088	5088		78.728	20.049	1	464790			35857	7435	21102	21103	43372	43372					-0.01953855746978661
QPRGNVDEEL	10	Unmodified	_QPRGNVDEEL_					0	0	0		ENST00000462906.1_1_3:195256593-195269923:-|nuORF;ENSG00000184203|ENST00000618156|PPP1R2	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	ENST00000462906.1_1_3:195256593-195269923:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.783203125	2	578.783284	1155.55202	0.11421	6.6103E-05	0.4654	0.00026937	0.57961	0.00033547	578.7834370222162	28.857	0.685	28.857	28.661	29.346	0.00046921					48	24	3	0	0	0	0.12738	1	5130	5130		66.457	16.524	1	430410			35858	7435	21102	21103	43373	43373					-0.01953855746978661
QPRGRRPP	8	Unmodified	_QPRGRRPP_					0	0	0		ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.75872802734375	2	482.283392	962.552231	0.21644	0.00010439	0.87182	0.00042047	1.0883	0.00052485	482.2843856998555	32.923	0.13773	32.978	32.864	33.002	0.055309					6	4	2	0	0	0	0.34247	1	6309	6309		4.756	0	1	37521			35859	9123	21103	21104	43374	43374					0.06945653554168985
QPRIQPFQN	9	Unmodified	_QPRIQPFQN_					0	0	0		ENST00000595376.1_1_19:49302930-49310451:-|nuORF;ENSG00000105552|ENST00000316273|BCAT2	ENST00000595376.1_1_19:49302930-49310451:-|nuORF	ENST00000595376.1_1_19:49302930-49310451:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3231811523438	2	564.301447	1126.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.12	1	12.023	11.523	12.523	-0.096607								0	0	0	0.25631	1	34	34		4.3292	0	1				35860	1992	21104	21105	43375	43375					0.030110659403817408
QPRIRVAVK	9	Unmodified	_QPRIRVAVK_					0	0	0			REV__nc|ENSG00000116852|O75037-3|KIF21B	REV__nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3008422851562	2	533.845825	1065.6771	0.40227	0.00021475	-0.45316	-0.00024192	-0.050892	-2.7169E-05	533.8454461100932	24.19	0.51285	24.19	23.973	24.486	0					31	17	2	0	0	0	0.25879	1	3633	3633		4.756	0	1	97089	+		35861	14945	21105	21106	43376	43376					0.1468852597070054
QPRKIKQK	8	Unmodified	_QPRKIKQK_					0	0	0		nc|ENSG00000110080|Q11206-7|ST3GAL4;nc|ENSG00000110080|Q11206-3|ST3GAL4;nc|ENSG00000110080|Q11206-6|ST3GAL4;nc|ENSG00000110080|Q11206-5|ST3GAL4;nc|ENSG00000110080|Q11206-2|ST3GAL4;ENSG00000110080|ENST00000444328|ST3GAL4;nc|ENSG00000110080|Q11206-4|ST3GAL4	nc|ENSG00000110080|Q11206-7|ST3GAL4	nc|ENSG00000110080|Q11206-7|ST3GAL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7694091796875	2	513.33255	1024.65055	0.17145	8.8013E-05	-0.17666	-9.0686E-05	-0.0052065	-2.6727E-06	513.3326524149425	16.209	0.51052	16.209	15.981	16.491	0					25	17	2	0	0	0	0.34092	1	1204	1204		13.508	4.1604	1	29177			35862	2294	21106	21107	43377	43377					0.13920837079353987
QPRLFTMDL	9	Oxidation (M)	_QPRLFTM(Oxidation (M))DL_		QPRLFTM(1)DL		QPRLFTM(100)DL	0	0	1		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.7924194335938	2	568.792066	1135.56958	0.31062	0.00017668	0.42681	0.00024277	0.73743	0.00041944	568.7924018127741	52.732	0.79531	52.732	52.267	53.062	0					71	28	3	0	0	0	0.0028626	3	12437	12318;12420;12437		103.35	63.396	1	1216200			35863	7854	21107	21108	43378;43379;43380	43380		851			0.007217682543114279
QPRLFTMDL	9	Oxidation (M)	_QPRLFTM(Oxidation (M))DL_		QPRLFTM(1)DL		QPRLFTM(93)DL	0	0	1		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.7925415039062	2	568.792066	1135.56958	0.53248	0.00030287	-0.26771	-0.00015227	0.26477	0.0001506	568.7918014792001	52.62	1.1714	52.67	52.202	53.373	0.050571					87	42	3	0	0	0	0.0042138	1	12411	12411		92.653	52.696	1	1044300			35864	7854	21107	21108	43381	43381		851			0.007217682543114279
QPRLFTMDL	9	Oxidation (M)	_QPRLFTM(Oxidation (M))DL_		QPRLFTM(1)DL		QPRLFTM(100)DL	0	0	1		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.7923583984375	2	568.792066	1135.56958	0.23266	0.00013233	0.40706	0.00023153	0.63972	0.00036387	568.7924204422678	52.876	0.76393	52.87	52.405	53.169	-0.0067482					62	27	3	0	0	0	0.0028626	2	12463	12444;12463		103.35	63.396	1	1260800			35865	7854	21107	21108	43382;43383	43383		851			0.007217682543114279
QPRLHIVEV	9	Unmodified	_QPRLHIVEV_					0	0	0		nc|ENSG00000163508|O95936-3|EOMES;nc|ENSG00000163508|O95936-2|EOMES;ENSG00000073861|ENST00000177694|TBX21;nc|ENSG00000163508|O95936|EOMES;ENSG00000163508|ENST00000449599|EOMES	nc|ENSG00000163508|O95936-3|EOMES	nc|ENSG00000163508|O95936-3|EOMES	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.8222045898438	2	545.822015	1089.62948	0.16649	9.0874E-05	0.29464	0.00016082	0.46113	0.0002517	545.8221984756343	39.761	0.54329	39.761	39.48	40.024	0					43	19	3	0	0	0	0.16283	1	8417	8417		29.082	0.59474	1	305150			35866	1008	21108	21109	43384	43384					0.08824826979844147
QPRLHIVEV	9	Unmodified	_QPRLHIVEV_					0	0	0		nc|ENSG00000163508|O95936-3|EOMES;nc|ENSG00000163508|O95936-2|EOMES;ENSG00000073861|ENST00000177694|TBX21;nc|ENSG00000163508|O95936|EOMES;ENSG00000163508|ENST00000449599|EOMES	nc|ENSG00000163508|O95936-3|EOMES	nc|ENSG00000163508|O95936-3|EOMES	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8224487304688	2	545.822015	1089.62948	0.57824	0.00031562	-0.1039	-5.6713E-05	0.47434	0.0002589	545.8220934105268	39.576	0.55159	39.669	39.442	39.994	0.09267					40	19	3	0	0	0	0.12642	1	8379	8379		34.402	8.1336	1	266380			35867	1008	21108	21109	43385	43385					0.08824826979844147
QPRLHIVEV	9	Unmodified	_QPRLHIVEV_					0	0	0		nc|ENSG00000163508|O95936-3|EOMES;nc|ENSG00000163508|O95936-2|EOMES;ENSG00000073861|ENST00000177694|TBX21;nc|ENSG00000163508|O95936|EOMES;ENSG00000163508|ENST00000449599|EOMES	nc|ENSG00000163508|O95936-3|EOMES	nc|ENSG00000163508|O95936-3|EOMES	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3087158203125	2	545.822015	1089.62948	0.56399	0.00030784	-0.39092	-0.00021337	0.17307	9.4467E-05	545.8219955010405	39.563	0.46991	39.663	39.452	39.922	0.099407					30	16	2	0	0	0	0.11486	1	8383	8383		48.346	16.04	1	458100			35868	1008	21108	21109	43386	43386					0.08824826979844147
QPRLSPSPF	9	Unmodified	_QPRLSPSPF_					0	0	0			REV__ENST00000367568.4_1_6:144471688-144507808:+|nuORF	REV__ENST00000367568.4_1_6:144471688-144507808:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.768798828125	2	514.779816	1027.54508	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.999	1	74.052	73.552	74.552	0.052361								0	0	0	0.20639	1	18933	18933		20.454	1.1966	1		+		35869	20317	21109	21110	43387	43387					0.03240876163090434
QPRLTYKTV	9	Unmodified	_QPRLTYKTV_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3221435546875	2	553.321848	1104.62914	0.36904	0.0002042	0.54072	0.00029919	0.90976	0.00050339	553.322136607598	28.876	0.50609	28.876	28.611	29.117	0					32	17	2	0	0	0	0.057976	2	5084	5084;5108		49.933	9.9833	1	383930			35870	4763	21110	21111	43388;43389	43388					0.08101407259982807
QPRLTYKTV	9	Unmodified	_QPRLTYKTV_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3223266601562	2	553.321848	1104.62914	0.13762	7.6147E-05	0.67839	0.00037537	0.81601	0.00045151	553.322120495874	28.835	0.49485	28.835	28.606	29.1	0.0004673					32	17	2	0	0	0	0.037019	3	5066	5061;5066;5096		57.722	15.882	1	305110			35871	4763	21110	21111	43390;43391;43392	43391					0.08101407259982807
QPRLTYKTV	9	Unmodified	_QPRLTYKTV_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.321848	1104.62914	0.31259	0.00017296	0.475	0.00026283	0.78759	0.00043579	553.3220360017285	28.795	0.49401	28.791	28.599	29.093	-0.0042572	-0.043101	-8.049E-05	NaN	57.722	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362020			35872	4763	21110	21111							0.08101407259982807
QPRNDFGNFF	10	Unmodified	_QPRNDFGNFF_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000571676.5_1_16:11858892-11864657:-|nuORF;ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	ENSG00000122299|ENST00000355758|ZC3H7A;ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.7908935546875	2	621.288537	1240.56252	0.29377	0.00018251	0.047349	2.9417E-05	0.34112	0.00021193	621.2882822242567	59.069	0.50623	59.055	58.889	59.396	-0.014267					29	17	3	0	0	0	0.31867	1	14363	14363		18.146	1.0335	1	316160			35873	3037;23414	21111	21112	43393	43393					-0.04813828301917056
QPRPAPSQQ	9	Unmodified	_QPRPAPSQQ_					0	0	0			REV__ENST00000585041.1_1_17:17380355-17380580:+|nuORF	REV__ENST00000585041.1_1_17:17380355-17380580:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7403564453125	2	504.764697	1007.51484	0.36751	0.00018551	-4.0344	-0.0020364	-3.6669	-0.0018509	504.7629819693274	30.05	0.36946	30.072	29.813	30.182	0.021383					13	12	2	0	0	0	0.24688	1	5460	5460		14.838	3.198	1	64801	+		35874	16062	21112	21113	43394	43394					0.011385174978954637
QPRPMCSWGSL	11	Unmodified	_QPRPMCSWGSL_					0	0	0			REV__ENST00000561859.5_1_16:23555925-23568664:-|nuORF	REV__ENST00000561859.5_1_16:23555925-23568664:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.575439453125	3	421.198726	1260.57435	0.26756	0.0001127	-0.77794	-0.00032767	-0.51038	-0.00021497	421.1984989429741	33.413	1.0476	33.479	33.128	34.176	0.06636					90	37	4	0	0	0	0.33122	1	6632	6632		4.4062	4.4062	1	535500	+		35875	22311	21113	21114	43395	43395					-0.045516708745708456
QPRPMCSWGSL	11	Unmodified	_QPRPMCSWGSL_					0	0	0			REV__ENST00000561859.5_1_16:23555925-23568664:-|nuORF	REV__ENST00000561859.5_1_16:23555925-23568664:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5762939453125	3	421.198726	1260.57435	-0.10519	-4.4307E-05	-0.24641	-0.00010379	-0.35161	-0.0001481	421.1987021462051	33.359	1.4086	33.425	33.055	34.463	0.066704					97	50	4	0	0	0	0.3322	1	6653	6653		4.7159	0	1	484300	+		35876	22311	21113	21114	43396	43396					-0.045516708745708456
QPRPPAPSV	9	Unmodified	_QPRPPAPSV_					0	0	0			REV__ENST00000594051.5_1_19:59031189-59031285:-|nuORF	REV__ENST00000594051.5_1_19:59031189-59031285:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.76611328125	2	474.766709	947.518865	0.22406	0.00010638	-0.58917	-0.00027972	-0.36511	-0.00017334	474.76633015854725	17.478	0.60661	17.418	17.129	17.736	-0.060431					47	20	3	0	0	0	0.3208	1	1703	1703		5.7319	0.43497	1	281320	+		35877	22584	21114	21115	43397	43397					0.04300606991614586
QPRPPHRPA	9	Unmodified	_QPRPPHRPA_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2965698242188	2	528.296499	1054.57845	0.084384	4.458E-05	0.73172	0.00038657	0.81611	0.00043115	528.2965409881391	14.184	0.44878	14.079	13.79	14.238	-0.10466					25	15	2	0	0	0	0.34681	1	671	671		1.8442	0	1	106160			35878	5969	21115	21116	43398	43398					0.0533392272564015
QPRPRSSDL	9	Unmodified	_QPRPRSSDL_					0	0	0		ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2833862304688	2	528.283254	1054.55196	0.41722	0.00022041	0.10201	5.3893E-05	0.51923	0.0002743	528.2832690772142	16.244	1.1331	16.182	15.943	17.077	-0.062532					66	39	4	0	0	0	0.28225	1	1275	1275		11.495	2.7493	1	423470			35879	4427	21116	21117	43399	43399					0.026861890436521207
QPRPVRIQTL	10	Unmodified	_QPRPVRIQTL_					0	0	0		nc|ENSG00000181722|Q9HC78-2|ZBTB20;ENSG00000181722|ENST00000675478|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.3673095703125	2	604.367121	1206.71969	0.47385	0.00028638	-0.47967	-0.0002899	-0.0058225	-3.5189E-06	604.3667972917617	33.381	0.55525	33.381	33.145	33.7	0					45	19	3	0	0	0	0.27239	1	6486	6486		16.149	7.4037	1	380860			35880	7244	21117	21118	43400	43400					0.12459876308275852
QPRPVRIQTL	10	Unmodified	_QPRPVRIQTL_					0	0	0		nc|ENSG00000181722|Q9HC78-2|ZBTB20;ENSG00000181722|ENST00000675478|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.36669921875	2	604.367121	1206.71969	0.57116	0.00034519	-0.52349	-0.00031638	0.047663	2.8806E-05	604.3667478342833	33.257	0.54815	33.313	33.091	33.639	0.055313					46	19	3	0	0	0	0.25441	1	6442	6442		18.373	6.8784	1	471710			35881	7244	21117	21118	43401	43401					0.12459876308275852
QPRPVRIQTL	10	Unmodified	_QPRPVRIQTL_					0	0	0		nc|ENSG00000181722|Q9HC78-2|ZBTB20;ENSG00000181722|ENST00000675478|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	604.367121	1206.71969	0.21237	0.00012835	0.15666	9.4678E-05	0.36903	0.00022303	604.3671268568908	33.299	0.5275	33.366	33.105	33.633	0.0667	0.012866	0.00058047	NaN	18.373	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	416420			35882	7244	21117	21118							0.12459876308275852
QPRQNVAYNR	10	Unmodified	_QPRQNVAYNR_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.2841491699219	3	415.886415	1244.63742	-0.12452	-5.1786E-05	-1.1678	-0.00048569	-1.2924	-0.00053747	415.8857444143649	18.727	0.47547	18.669	18.483	18.958	-0.058174					29	16	2	0	0	0	0.32068	1	2089	2089		3.5871	0.74377	1	64996			35883	4041	21118	21119	43402	43402					0.024883542293082428
QPRQNVAYNR	10	Unmodified	_QPRQNVAYNR_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	415.886415	1244.63742	-0.20637	-8.5825E-05	-1.2274	-0.00051046	-1.4338	-0.00059628	415.88578594615336	18.69	0.47622	18.69	18.419	18.895	0	0.010534	-2.5506E-05	NaN	3.5871	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82504			35884	4041	21118	21119							0.024883542293082428
QPRQSGSFRVL	11	Unmodified	_QPRQSGSFRVL_					0	0	0		ENST00000514308.3_1_4:186423450-186427817:-|nuORF;ENST00000514142.5_1_4:186423450-186434727:-|nuORF;nc|ENSG00000154553|Q53GG5-2|PDLIM3;ENSG00000154553|ENST00000284767|PDLIM3	ENST00000514308.3_1_4:186423450-186427817:-|nuORF	ENST00000514308.3_1_4:186423450-186427817:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.570556640625	3	425.570316	1273.68912	0.092247	3.9257E-05	0.34485	0.00014676	0.4371	0.00018602	425.5703503290052	31.997	0.56873	31.997	31.9	32.469	0					29	20	2	0	0	0	0.43508	1	6095	6095		5.5233	0	1	383460			35885	5136	21119	21120	43403	43403					0.06322097923225556
QPRRDLHT	8	Unmodified	_QPRRDLHT_					0	0	0		ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.76953125	2	511.778139	1021.54173	0.054796	2.8043E-05	3.8993	0.0019956	3.9541	0.0020236	511.78137882980536	16.216	0.74514	16.102	15.866	16.611	-0.11434					96	25	5	0	0	0	0.3671	1	1234	1234		23.148	3.7094	1	647380			35886	2355	21120	21121	43404	43404					0.03181626109073932
QPRRISAISV	10	Unmodified	_QPRRISAISV_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-2|DHX57;DHX57|p.A701Qfs*3|1|0.32|ENSG00000163214|chr2:38848332-38848332|C/-|frameshift_variant;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000174953|Q9H2U1-3|DHX36	ENSG00000163214|ENST00000457308|DHX57	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.7935791015625	2	563.838197	1125.66184	0.11729	6.613E-05	-0.16504	-9.3057E-05	-0.047756	-2.6927E-05	563.8380922490421	31.129	0.54713	31.157	30.896	31.444	0.028076					47	19	3	0	0	0	0.31538	1	5761	5761		12.873	4.1272	1	349210			35887	5658;6831	21121	21122	43405	43405					0.10403614382835258
QPRRISAISV	10	Unmodified	_QPRRISAISV_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-2|DHX57;DHX57|p.A701Qfs*3|1|0.32|ENSG00000163214|chr2:38848332-38848332|C/-|frameshift_variant;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000174953|Q9H2U1-3|DHX36	ENSG00000163214|ENST00000457308|DHX57	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.79345703125	2	563.838197	1125.66184	0.18574	0.00010473	0.77986	0.00043972	0.96561	0.00054445	563.8379948267925	31.077	0.54658	31.108	30.922	31.469	0.030401					54	19	5	0	0	0	0.31401	1	5780	5780		14.405	2.1647	1	364370			35888	5658;6831	21121	21122	43406	43406					0.10403614382835258
QPRRISAISV	10	Unmodified	_QPRRISAISV_					0	0	0		ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-2|DHX57;DHX57|p.A701Qfs*3|1|0.32|ENSG00000163214|chr2:38848332-38848332|C/-|frameshift_variant;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000174953|Q9H2U1-3|DHX36	ENSG00000163214|ENST00000457308|DHX57	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.838197	1125.66184	0.11346	6.3974E-05	0.73151	0.00041246	0.84498	0.00047643	563.8380151379907	31.16	0.69081	31.16	30.862	31.553	0	0.018664	0.00059127	NaN	10.151	59	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293790			35889	5658;6831	21121	21122							0.10403614382835258
QPRRISAVSV	10	Unmodified	_QPRRISAVSV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.K592Rfs*19|1|0.3|ENSG00000135829|chr1:182874910-182874910|A/-|frameshift_variant;nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000132153|Q7L2E3-3|DHX30	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.8302612304688	2	556.830372	1111.64619	0.21888	0.00012188	-0.089052	-4.9587E-05	0.12983	7.2293E-05	556.8302653842566	26.662	0.6841	26.662	26.379	27.063	0					54	23	3	0	0	0	0.324	2	4448	4400;4448		17.443	7.1161	1	310520			35890	3909;3611	21122	21123	43407;43408	43408					0.0948332786579158
QPRRISAVSV	10	Unmodified	_QPRRISAVSV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.K592Rfs*19|1|0.3|ENSG00000135829|chr1:182874910-182874910|A/-|frameshift_variant;nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000132153|Q7L2E3-3|DHX30	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8306274414062	2	556.830372	1111.64619	0.2668	0.00014856	-0.1557	-8.6701E-05	0.1111	6.1861E-05	556.8301749331895	26.653	0.6815	26.614	26.342	27.024	-0.038671					51	23	3	0	0	0	0.28174	2	4400	4400;4454		22.658	4.5117	1	342540			35891	3909;3611	21122	21123	43409;43410	43409					0.0948332786579158
QPRRISAVSV	10	Unmodified	_QPRRISAVSV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.K592Rfs*19|1|0.3|ENSG00000135829|chr1:182874910-182874910|A/-|frameshift_variant;nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	ENSG00000135829|ENST00000367549|DHX9;nc|ENSG00000132153|Q7L2E3-3|DHX30	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.8303833007812	2	556.830372	1111.64619	0.41924	0.00023345	-0.43114	-0.00024007	-0.011901	-6.6269E-06	556.8300608860451	26.695	0.59404	26.672	26.409	27.003	-0.022238					48	20	3	0	0	0	0.34053	2	4412	4412;4464		14.405	4.2055	1	284420			35892	3909;3611	21122	21123	43411;43412	43411					0.0948332786579158
QPRRKIWN	8	Unmodified	_QPRRKIWN_					0	0	0			REV__ENSG00000163106|ENST00000295256|HPGDS	REV__ENSG00000163106|ENST00000295256|HPGDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.8408203125	2	549.319974	1096.6254	0.38045	0.00020899	0.44869	0.00024647	0.82913	0.00045546	549.3198504453065	17.066	0.37125	17.066	16.925	17.296	0					17	12	2	0	0	0	0.45942	1	1528	1528		2.5775	0	1	40265	+		35893	17036	21123	21124	43413	43413					0.08094782276816659
QPRRLGGARPA	11	Unmodified	_QPRRLGGARPA_					0	0	0			REV__ENST00000317827.8_1_8:38644723-38644849:+|nuORF	REV__ENST00000317827.8_1_8:38644723-38644849:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8470458984375	2	589.846887	1177.67922	0.16555	9.765E-05	-0.13435	-7.9245E-05	0.031203	1.8405E-05	589.8467329383412	15.727	0.87363	15.662	15.36	16.233	-0.064414					65	29	3	0	0	0	0.42346	1	1102	1102		8.1555	1.9497	1	300490	+		35894	19946	21124	21125	43414	43414					0.09748954708516067
QPRRLLNTL	9	Unmodified	_QPRRLLNTL_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.84033203125	2	555.840739	1109.66693	0.52142	0.00028983	-0.61314	-0.00034081	-0.091714	-5.0979E-05	555.8402927164381	33.387	0.63192	33.453	33.182	33.814	0.06636					54	22	3	0	0	0	0.21447	1	6465	6465		21.537	11.463	1	684670			35895	5587	21125	21126	43415	43415					0.11647918245466826
QPRRLLNTL	9	Unmodified	_QPRRLLNTL_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8405151367188	2	555.840739	1109.66693	0.089888	4.9963E-05	-0.22132	-0.00012302	-0.13143	-7.3054E-05	555.8405088555699	33.416	0.61184	33.482	33.158	33.77	0.0667					48	21	3	0	0	0	0.21538	1	6447	6447		26.268	2.2476	1	557510			35896	5587	21125	21126	43416	43416					0.11647918245466826
QPRRNIVFL	9	Unmodified	_QPRRNIVFL_					0	0	0		ENSG00000128242|ENST00000406361|GAL3ST1;GAL3ST1|p.K82N|1|0.12|ENSG00000128242|chr22:30555979-30555979|C/A|missense_variant	ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.8429565429688	2	571.843282	1141.67201	0.51917	0.00029689	-0.45123	-0.00025803	0.067945	3.8854E-05	571.8429578465953	40.593	0.45725	40.686	40.448	40.905	0.09267					39	16	3	0	0	0	0.25314	1	8709	8709		15.847	3.3156	1	584670			35897	3352	21126	21127	43417	43417					0.10684222108102404
QPRRNIVFL	9	Unmodified	_QPRRNIVFL_					0	0	0		ENSG00000128242|ENST00000406361|GAL3ST1;GAL3ST1|p.K82N|1|0.12|ENSG00000128242|chr22:30555979-30555979|C/A|missense_variant	ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.8435668945312	2	571.843282	1141.67201	0.28377	0.00016227	0.05489	3.1389E-05	0.33866	0.00019366	571.8432401945857	40.582	0.40831	40.681	40.427	40.835	0.099407					36	14	3	0	0	0	0.25314	1	8659	8659		15.847	2.2323	1	676880			35898	3352	21126	21127	43418	43418					0.10684222108102404
QPRRNIVFL	9	Unmodified	_QPRRNIVFL_					0	0	0		ENSG00000128242|ENST00000406361|GAL3ST1;GAL3ST1|p.K82N|1|0.12|ENSG00000128242|chr22:30555979-30555979|C/A|missense_variant	ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	571.843282	1141.67201	0.28377	0.00016227	0.05489	3.1389E-05	0.33866	0.00019366	571.8432401945857	40.582	0.40831	40.681	40.427	40.835	0.099407	-0.057068	0.00025423	NaN	15.847	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	676880			35899	3352	21126	21127							0.10684222108102404
QPRRPRNLAA	10	Unmodified	_QPRRPRNLAA_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8471069335938	2	589.846887	1177.67922	0.16337	9.6363E-05	-0.089047	-5.2524E-05	0.074322	4.3839E-05	589.8467653121164	15.637	0.95684	15.637	15.257	16.214	0					79	32	4	0	0	0	0.34325	2	1083	1083;1132		13.906	5.1606	1	316920			35900	1046	21127	21128	43419;43420	43419					0.09748954708516067
QPRRPRNLAA	10	Unmodified	_QPRRPRNLAA_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8468017578125	2	589.846887	1177.67922	0.14897	8.7868E-05	-0.20904	-0.0001233	-0.060072	-3.5433E-05	589.8467884927181	15.766	0.84889	15.657	15.347	16.195	-0.10981					76	28	4	0	0	0	0.2811	2	1120	1120;1165		22.736	2.3217	1	292740			35901	1046	21127	21128	43421;43422	43421					0.09748954708516067
QPRRPRNLAA	10	Unmodified	_QPRRPRNLAA_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8468627929688	2	589.846887	1177.67922	0.16555	9.765E-05	-0.13435	-7.9245E-05	0.031203	1.8405E-05	589.8467329383412	15.727	0.87363	15.662	15.36	16.233	-0.064414					65	29	3	0	0	0	0.38773	1	1147	1147		5.7319	0.83484	1	300490			35902	1046	21127	21128	43423	43423					0.09748954708516067
QPRRPRNLAAA	11	Unmodified	_QPRRPRNLAAA_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.2457580566406	3	417.246055	1248.71634	-0.010893	-4.5452E-06	-0.27497	-0.00011473	-0.28587	-0.00011928	417.24565590525816	16.837	0.91407	16.723	16.503	17.417	-0.11434					72	32	3	0	0	0	0.32563	1	1465	1465		17.049	4.8738	1	239470			35903	1046	21128	21129	43424	43424					0.10192626254297465
QPRRPRNLAAA	11	Unmodified	_QPRRPRNLAAA_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.245849609375	3	417.246055	1248.71634	0.1764	7.3604E-05	-0.027035	-1.128E-05	0.14937	6.2324E-05	417.24579843693317	16.749	0.7077	16.687	16.442	17.149	-0.062534					54	25	4	0	0	0	0.37728	1	1426	1426		14.218	5.7739	1	308010			35904	1046	21128	21129	43425	43425					0.10192626254297465
QPRRPRNLAAA	11	Unmodified	_QPRRPRNLAAA_					0	0	0		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	417.246055	1248.71634	-0.10687	-4.459E-05	-0.36632	-0.00015285	-0.47319	-0.00019744	417.24570985884515	16.688	0.88472	16.688	16.433	17.318	0	-0.01087	-0.00028755	NaN	17.049	59	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303100			35905	1046	21128	21129							0.10192626254297465
QPRRVAAISL	10	Unmodified	_QPRRVAAISL_					0	0	0		DHX33|p.F698*|1|0.11|ENSG00000005100|chr17:5444235-5444236|AA/-|frameshift_variant;ENSG00000005100|ENST00000225296|DHX33	DHX33|p.F698*|1|0.11|ENSG00000005100|chr17:5444235-5444236|AA/-|frameshift_variant	DHX33|p.F698*|1|0.11|ENSG00000005100|chr17:5444235-5444236|AA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7986450195312	2	555.840739	1109.66693	0.88955	0.00049445	-0.65117	-0.00036195	0.23838	0.0001325	555.8401739718475	33.889	0.38962	33.955	33.786	34.176	0.06636					22	13	2	0	0	0	0.31581	1	6609	6609		11.495	2.1473	1	128110			35906	265	21129	21130	43426	43426					0.11647918245466826
QPRSVLQMT	9	Unmodified	_QPRSVLQMT_					0	0	0			REV__nc|ENSG00000067829|P51553-2|IDH3G	REV__nc|ENSG00000067829|P51553-2|IDH3G	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2962036132812	2	530.284408	1058.55426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.441	1	60.441	59.941	60.941	0								0	0	0	0.14393	1	14782	14782		36.127	0.082828	1		+		35907	13695	21130	21131	43427	43427					0.02732901457125081
QPRSVLQMT	9	Unmodified	_QPRSVLQMT_					0	0	0			REV__nc|ENSG00000067829|P51553-2|IDH3G	REV__nc|ENSG00000067829|P51553-2|IDH3G	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.29638671875	2	530.284408	1058.55426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.521	1	60.511	60.011	61.011	-0.0094566								0	0	0	0.14393	1	14800	14800		36.127	0.082828	1		+		35908	13695	21130	21131	43428	43428					0.02732901457125081
QPRTLPRR	8	Unmodified	_QPRTLPRR_					0	0	0		chr3:122912069-122912235|516|34.87|0.43|6.34|-|1|SEMA5B,SEMA5B|1	chr3:122912069-122912235|516|34.87|0.43|6.34|-|1|SEMA5B,SEMA5B|1	chr3:122912069-122912235|516|34.87|0.43|6.34|-|1|SEMA5B,SEMA5B|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.769287109375	2	512.312149	1022.60975	-0.028729	-1.4718E-05	-0.72546	-0.00037166	-0.75419	-0.00038638	512.3115818714382	15.585	0.57018	15.521	15.158	15.728	-0.064413					35	18	2	0	0	0	0.34218	1	1121	1121		9.3474	3.587	1	57100			35909	157	21131	21132	43429	43429					0.09934495759750916
QPRTPILLI	9	Unmodified	_QPRTPILLI_					0	0	0		ENSG00000113083|ENST00000231004|LOX	ENSG00000113083|ENST00000231004|LOX	ENSG00000113083|ENST00000231004|LOX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.836669921875	2	525.837134	1049.65972	0.10344	5.4395E-05	-0.36651	-0.00019272	-0.26306	-0.00013833	525.8367626365639	61.393	0.73085	61.49	61.273	62.004	0.096989					66	26	3	0	0	0	0.027237	1	15100	15100		61.357	0	1	830720			35910	2473	21132	21133	43430	43430					0.1368718564503979
QPRVPLTPT	9	Unmodified	_QPRVPLTPT_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7956237792969	2	504.795466	1007.57638	0.37219	0.00018788	-4.1924	-0.0021163	-3.8203	-0.0019284	505.2937493777988	37.17	0.87211	37.257	36.868	37.741	0.08741					90	31	4	0	0	0	0.027237	2	7651	7600;7651		61.357	10.868	1	1232600			35911	3953	21133	21134	43431;43432	43432					0.07289449197162412
QPRVPLTPT	9	Unmodified	_QPRVPLTPT_					0	0	0		nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	nc|ENSG00000136205|Q68CZ2-2|TNS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2942810058594	2	504.795466	1007.57638	0.50177	0.00025329	-4.4251	-0.0022338	-3.9233	-0.0019805	505.2936188930148	37.116	0.88935	37.209	36.846	37.735	0.093018					81	32	4	0	0	0	0.057976	2	7583	7583;7630		49.933	11.553	1	1272200			35912	3953	21133	21134	43433;43434	43433					0.07289449197162412
QPRVVVIGAGL	11	Unmodified	_QPRVVVIGAGL_					0	0	0		nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;nc|ENSG00000088826|Q9NWM0-3|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.2770385742188	2	554.84549	1107.67643	0.20316	0.00011272	-0.2914	-0.00016168	-0.08824	-4.896E-05	554.8453205880418	53.726	0.36897	53.783	53.611	53.98	0.056255					18	13	2	0	0	0	0.3259	1	12721	12721		13.906	0.86358	1	218770			35913	1331	21134	21135	43435	43435					0.12689686530984545
QPRVVVIGAGL	11	Unmodified	_QPRVVVIGAGL_					0	0	0		nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;nc|ENSG00000088826|Q9NWM0-3|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2769165039062	2	554.84549	1107.67643	0.37236	0.0002066	-0.29275	-0.00016243	0.079608	4.417E-05	554.8452162279116	53.781	0.34609	53.772	53.662	54.008	-0.0096092					18	12	2	0	0	0	0.3259	1	12759	12759		13.906	1.6654	1	193890			35914	1331	21134	21135	43436	43436					0.12689686530984545
QPRYGTPTAF	10	Unmodified	_QPRYGTPTAF_					0	0	0			REV__ENSG00000170835|ENST00000372080|CEL	REV__ENSG00000170835|ENST00000372080|CEL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.76416015625	2	569.288005	1136.56146	0.362	0.00020608	0.22696	0.00012921	0.58896	0.00033529	569.2880130027963	28.98	1.1517	28.992	28.706	29.858	0.012266					92	39	4	0	0	0	0.31889	1	5310	5310		6.2058	1.8765	1	1022200	+		35915	17599	21135	21136	43437	43437					-0.001360426708288287
QPRYGTPTAF	10	Unmodified	_QPRYGTPTAF_					0	0	0			REV__ENSG00000170835|ENST00000372080|CEL	REV__ENSG00000170835|ENST00000372080|CEL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	569.288005	1136.56146	0.10622	6.0468E-05	0.47238	0.00026892	0.5786	0.00032939	569.288269134338	28.951	0.98562	28.965	28.699	29.684	0.013474	-0.032201	0.00015617	NaN	6.2058	79	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	804200	+		35916	17599	21135	21136							-0.001360426708288287
QPRYPVNSV	9	Unmodified	_QPRYPVNSV_					0	0	0		ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2826538085938	2	530.282723	1058.55089	0.76513	0.00040574	0.31523	0.00016716	1.0804	0.0005729	530.2824912863542	32.409	0.89354	32.409	32.091	32.985	0					120	31	7	0	0	0	0.014206	4	6132	6132;6180;6222;6275		72.968	46.084	1	1351700			35917	2942	21136	21137	43438;43439;43440;43441	43438					0.023959746747550525
QPRYPVNSV	9	Unmodified	_QPRYPVNSV_					0	0	0		ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.282958984375	2	530.282723	1058.55089	0.69866	0.00037049	0.52448	0.00027812	1.2231	0.00064861	530.2825488932622	32.341	0.85717	32.396	32.007	32.864	0.055309					115	30	6	0	0	0	0.0059482	3	6165	6116;6165;6209		85.642	58.013	1	1522600			35918	2942	21136	21137	43442;43443;43444	43443					0.023959746747550525
QPRYPVNSV	9	Unmodified	_QPRYPVNSV_					0	0	0		ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	ENSG00000120438|ENST00000321394|TCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2828369140625	2	530.282723	1058.55089	0.51493	0.00027306	0.23337	0.00012375	0.7483	0.00039681	530.2825942349432	32.35	0.68814	32.404	32.103	32.791	0.054371					90	24	5	0	0	0	0.012386	2	6193	6149;6193		75.761	47.569	1	1526800			35919	2942	21136	21137	43445;43446	43446					0.023959746747550525
QPSALSFHPL	10	Unmodified	_QPSALSFHPL_					0	0	0		ENST00000569360.1_1_16:30546108-30546153:-|nuORF	ENST00000569360.1_1_16:30546108-30546153:-|nuORF	ENST00000569360.1_1_16:30546108-30546153:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7930908203125	2	548.792924	1095.57129	0.75247	0.00041295	-0.57516	-0.00031564	0.17731	9.7308E-05	548.7924923473269	54.664	0.85067	54.664	54.188	55.039	0					88	30	4	0	0	0	0.33817	1	12937	12937		14.838	5.4908	1	994190			35920	12009	21137	21138	43447	43447					0.027331453345595946
QPSALTVEL	9	Unmodified	_QPSALTVEL_					0	0	0			REV__ENST00000374759.7_1_17:79219212-79219299:-|nuORF	REV__ENST00000374759.7_1_17:79219212-79219299:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2771301269531	2	479.266207	956.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.67	1	72.67	72.17	73.17	0								0	0	0	0.23852	1	18536	18536		10.074	0	1		+		35921	20466	21138	21139	43448	43448					0.03786347832055981
QPSLPLTL	8	Unmodified	_QPSLPLTL_					0	0	0		nc|ENSG00000185684|Q6ZTU2-5|EP400P1;nc|ENSG00000185684|Q6ZTU2-2|EP400P1;nc|ENSG00000185684|Q6ZTU2|EP400P1;nc|ENSG00000185684|Q6ZTU2-6|EP400P1;nc|ENSG00000185684|Q6ZTU2-4|EP400P1	nc|ENSG00000185684|Q6ZTU2-5|EP400P1	nc|ENSG00000185684|Q6ZTU2-5|EP400P1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.2521667480469	2	434.760561	867.506569	-0.057082	-2.4817E-05	-0.54055	-0.00023501	-0.59763	-0.00025983	434.7604739850603	71.208	0.9002	71.208	70.873	71.773	0					55	31	3	0	0	0	0.29855	1	18221	18221		24.674	0	1	1235700			35922	12879	21139	21140	43449	43449					0.06751570528570028
QPSPTVHTK	9	Unmodified	_QPSPTVHTK_					0	0	0		nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1	nc|ENSG00000169679|O43683-2|BUB1	nc|ENSG00000169679|O43683-2|BUB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2804870605469	2	497.769448	993.524344	0.248	0.00012345	0.19104	9.5094E-05	0.43904	0.00021854	497.7694643223245	19.612	0.66566	19.612	19.211	19.877	0					49	23	3	0	0	0	0.2719	1	2341	2341		13.042	1.4022	1	75137			35923	6374	21140	21141	43450	43450					0.027322857834406022
QPSQPLSKS	9	Unmodified	_QPSQPLSKS_					0	0	0		ENST00000569930.1_1_16:2133412-2138608:+|nuORF;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;ENST00000497886.5_1_16:2128976-2136835:+|nuORF	ENST00000569930.1_1_16:2133412-2138608:+|nuORF;nc|ENSG00000103197|P49815-4|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2976989746094	2	486.261456	970.50836	0.11933	5.8028E-05	0.11231	5.4611E-05	0.23164	0.00011264	486.2624054910747	33.441	0.21962	33.508	33.387	33.607	0.0667					9	7	2	0	0	0	0.24471	1	6485	6485		17.113	7.7298	1	82074			35924	1817;12015	21141	21142	43451	43451					0.02192579546522211
QPSQPSPSQ	9	Unmodified	_QPSQPSPSQ_					0	0	0			REV__ENSG00000175727|ENST00000319080|MLXIP	REV__ENSG00000175727|ENST00000319080|MLXIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.77197265625	2	478.227613	954.440674	-0.019213	-9.1884E-06	1.7395	0.00083187	1.7203	0.00082268	478.22831609137785	28.441	0.73601	28.441	28.158	28.894	0.0004673					38	25	2	0	0	0	0.25066	1	4908	4908		11.64	0	1	156070	+		35925	17906	21142	21143	43452	43452					-0.038368703842706964
QPSSSHALD	9	Unmodified	_QPSSSHALD_					0	0	0		ENSG00000172199|ENST00000302270|OR8U1	ENSG00000172199|ENST00000302270|OR8U1	ENSG00000172199|ENST00000302270|OR8U1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.78662109375	2	471.219788	940.425024	0.45039	0.00021223	-1.5907	-0.00074955	-1.1403	-0.00053731	471.2206927091278	77.948	2.1115	77.948	76.422	78.533	0					128	78	4	0	0	0	0.25066	1	20230	20230		7.2892	0	1	237360			35926	6610	21143	21144	43453	43453					-0.04757156901325743
QPSSSSSKRSL	11	Unmodified	_QPSSSSSKRSL_					0	0	0		ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	ENSG00000179604|ENST00000335793|CDC42EP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.3046264648438	2	582.304384	1162.59421	-0.070224	-4.0892E-05	2.1527	0.0012535	2.0825	0.0012126	582.3057024409122	13.55	0.55229	13.483	13.162	13.714	-0.067496					43	19	3	0	0	0	0.44443	1	469	469		5.4027	1.8062	1	81242			35927	7134	21144	21145	43454	43454					0.019421196613848224
QPSVVRLEK	9	Unmodified	_QPSVVRLEK_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6;nc|ENSG00000155754|Q53TS8-2|C2CD6;nc|ENSG00000155754|Q53TS8-3|C2CD6;nc|ENSG00000155754|Q53TS8-1|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8143920898438	2	528.314023	1054.61349	0.20687	0.00010929	0.066512	3.5139E-05	0.27339	0.00014443	528.8138983692609	118.74	1.8195	118.72	118.15	119.97	-0.024147					433	229	2	0	0	0	0.34681	5	30746	30746;30777;30849;30928;30952		1.8442	0	1	25102			35928	5192	21145	21146	43455;43456;43457;43458;43459	43455					0.08837120742964544
QPTAERITQL	10	Unmodified	_QPTAERITQL_					0	0	0		nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1;nc|ENSG00000118514|Q9H2A2-2|ALDH8A1;ENST00000349305.8_1_6:135239555-135263608:-|nuORF	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.8201293945312	2	578.81967	1155.62479	-0.074057	-4.2866E-05	0.32598	0.00018868	0.25192	0.00014582	578.8197274322978	39.607	0.59248	39.607	39.321	39.914	0					48	21	3	0	0	0	0.22625	1	8376	8376		29.437	14.189	1	377030			35929	2832	21146	21147	43460	43460					0.05319898046423077
QPTAERITQL	10	Unmodified	_QPTAERITQL_					0	0	0		nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1;nc|ENSG00000118514|Q9H2A2-2|ALDH8A1;ENST00000349305.8_1_6:135239555-135263608:-|nuORF	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.81982421875	2	578.81967	1155.62479	0.20556	0.00011898	0.47486	0.00027486	0.68043	0.00039384	578.8196856846066	39.442	0.49912	39.535	39.278	39.777	0.09267					39	17	4	0	0	0	0.10933	1	8324	8324		46.022	9.8953	1	629930			35930	2832	21146	21147	43461	43461					0.05319898046423077
QPTAERITQL	10	Unmodified	_QPTAERITQL_					0	0	0		nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1;nc|ENSG00000118514|Q9H2A2-2|ALDH8A1;ENST00000349305.8_1_6:135239555-135263608:-|nuORF	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.81982421875	2	578.81967	1155.62479	0.28826	0.00016685	-0.29556	-0.00017108	-0.0073035	-4.2274E-06	578.8194364764586	39.371	0.68523	39.471	39.292	39.977	0.099407					47	24	3	0	0	0	0.17571	1	8289	8289		35.612	15.198	1	515370			35931	2832	21146	21147	43462	43462					0.05319898046423077
QPTAYAAPLT	10	Unmodified	_QPTAYAAPLT_					0	0	0			REV__ENSG00000124788|ENST00000436367|ATXN1	REV__ENSG00000124788|ENST00000436367|ATXN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7592163085938	2	516.771657	1031.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.5	1	25.444	24.944	25.944	-0.055931								0	0	0	0.34683	1	4074	4074		16.149	6.0752	1		+		35932	15250	21147	21148	43463	43463					0.014257502063173888
QPTFTVYAAG	10	Unmodified	_QPTFTVYAAG_					0	0	0		ENSG00000198768|ENST00000371149|APCDD1L	ENSG00000198768|ENST00000371149|APCDD1L	ENSG00000198768|ENST00000371149|APCDD1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.355224609375	2	527.763832	1053.51311	0.51072	0.00026954	0.39523	0.00020859	0.90595	0.00047813	527.7638582069326	43.574	0.75488	43.652	43.347	44.102	0.077515					55	27	3	0	0	0	0.31039	1	9563	9563		18.146	1.0335	1	588420			35933	8122	21148	21149	43464	43464					-0.011505363107289668
QPTFTVYAAG	10	Unmodified	_QPTFTVYAAG_					0	0	0		ENSG00000198768|ENST00000371149|APCDD1L	ENSG00000198768|ENST00000371149|APCDD1L	ENSG00000198768|ENST00000371149|APCDD1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.355224609375	2	527.763832	1053.51311	0.57782	0.00030495	0.79254	0.00041828	1.3704	0.00072323	527.7639940982818	43.603	0.83482	43.687	43.268	44.103	0.083992					78	30	4	0	0	0	0.3144	1	9545	9545		13.042	1.4022	1	680100			35934	8122	21148	21149	43465	43465					-0.011505363107289668
QPTGGKARL	9	Unmodified	_QPTGGKARL_					0	0	0		ENST00000559763.1_1_15:63418217-63447889:-|nuORF;ENST00000402023.1_1_6:74328227-74328317:+|nuORF;ENSG00000185088|ENST00000330964|RPS27L;ENSG00000177954|ENST00000651669|RPS27;ENST00000482846.1_1_15:63447754-63448774:-|nuORF	ENST00000559763.1_1_15:63418217-63447889:-|nuORF	ENST00000559763.1_1_15:63418217-63447889:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.2721252441406	2	464.272158	926.529764	-0.32668	-0.00015167	-0.16671	-7.7397E-05	-0.49339	-0.00022906	464.2720840694408	14.202	0.88637	14.202	13.872	14.759	0					86	30	5	0	0	0	0.079752	1	656	656		41.84	13.353	1	929800			35935	7027	21149	21150	43466	43466					0.06356009365879345
QPTGGKARL	9	Unmodified	_QPTGGKARL_					0	0	0		ENST00000559763.1_1_15:63418217-63447889:-|nuORF;ENST00000402023.1_1_6:74328227-74328317:+|nuORF;ENSG00000185088|ENST00000330964|RPS27L;ENSG00000177954|ENST00000651669|RPS27;ENST00000482846.1_1_15:63447754-63448774:-|nuORF	ENST00000559763.1_1_15:63418217-63447889:-|nuORF	ENST00000559763.1_1_15:63418217-63447889:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.27215576171875	2	464.272158	926.529764	-0.29841	-0.00013854	-0.033394	-1.5504E-05	-0.33181	-0.00015405	464.27210236033324	14.326	0.83141	14.222	13.991	14.823	-0.10466					47	28	2	0	0	0	0.041175	2	689	689;735		56.177	14.082	1	943890			35936	7027	21149	21150	43467;43468	43467					0.06356009365879345
QPTGGKARL	9	Unmodified	_QPTGGKARL_					0	0	0		ENST00000559763.1_1_15:63418217-63447889:-|nuORF;ENST00000402023.1_1_6:74328227-74328317:+|nuORF;ENSG00000185088|ENST00000330964|RPS27L;ENSG00000177954|ENST00000651669|RPS27;ENST00000482846.1_1_15:63447754-63448774:-|nuORF	ENST00000559763.1_1_15:63418217-63447889:-|nuORF	ENST00000559763.1_1_15:63418217-63447889:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.27203369140625	2	464.272158	926.529764	-0.14532	-6.7469E-05	-0.38671	-0.00017954	-0.53203	-0.00024701	464.2720146835603	14.285	0.92924	14.219	13.889	14.818	-0.066068					106	32	6	0	0	0	0.16283	2	678	678;723		29.082	12.139	1	779000			35937	7027	21149	21150	43469;43470	43469					0.06356009365879345
QPTHPIRL	8	Unmodified	_QPTHPIRL_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000134308|ENST00000238081|YWHAQ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF	ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.9352111816406	2	481.282526	960.550499	0.070585	3.3971E-05	-1.2431	-0.00059829	-1.1725	-0.00056432	481.28171698640654	24.611	0.50721	24.58	24.258	24.765	-0.03141					27	17	3	0	0	0	0.34378	1	3781	3781		3.9444	0	1	74647			35938	6417	21150	21151	43471	43471					0.06864599745563282
QPTRKRKL	8	Unmodified	_QPTRKRKL_					0	0	0			REV__ENSG00000162621|ENST00000294635|LRRC53	REV__ENSG00000162621|ENST00000294635|LRRC53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7710571289062	2	513.830175	1025.6458	0.11878	6.1033E-05	-2.017	-0.0010364	-1.8982	-0.00097537	513.8288206330417	15.883	0.32894	15.883	15.679	16.008	0					23	11	3	0	0	0	0.34319	1	1175	1175		5.7604	0	1	42215	+		35939	16993	21151	21152	43472	43472					0.1339995293658376
QPTRKRKL	8	Unmodified	_QPTRKRKL_					0	0	0			REV__ENSG00000162621|ENST00000294635|LRRC53	REV__ENSG00000162621|ENST00000294635|LRRC53	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	513.830175	1025.6458	0.041332	2.1238E-05	-2.4231	-0.001245	-2.3817	-0.0012238	513.8285738974005	15.951	0.29527	15.836	15.692	15.987	-0.11434	-0.029893	-0.00032634	NaN	2.5775	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58309	+		35940	16993	21151	21152							0.1339995293658376
QPTRRHLK	8	Unmodified	_QPTRRHLK_					0	0	0		nc|ENSG00000121897|O43766-2|LIAS;nc|ENSG00000121897|O43766-3|LIAS;ENSG00000121897|ENST00000640888|LIAS	nc|ENSG00000121897|O43766-2|LIAS	nc|ENSG00000121897|O43766-2|LIAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7957153320312	2	518.312149	1034.60975	0.029876	1.5485E-05	-0.165	-8.5522E-05	-0.13513	-7.0037E-05	518.3119861560633	12.484	0.41933	12.484	12.364	12.783	0					24	13	2	0	0	0	0.344	1	174	174		2.5775	0	1	433370			35941	3017	21152	21153	43473	43473					0.09382495759723497
QPTRRHLK	8	Unmodified	_QPTRRHLK_					0	0	0		nc|ENSG00000121897|O43766-2|LIAS;nc|ENSG00000121897|O43766-3|LIAS;ENSG00000121897|ENST00000640888|LIAS	nc|ENSG00000121897|O43766-2|LIAS	nc|ENSG00000121897|O43766-2|LIAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7957763671875	2	518.312149	1034.60975	0.029441	1.526E-05	-0.22851	-0.00011844	-0.19907	-0.00010318	518.3120197337087	12.491	0.52512	12.394	12.206	12.731	-0.096607					49	17	4	0	0	0	0.344	1	170	170		2.5775	0	1	487410			35942	3017	21152	21153	43474	43474					0.09382495759723497
QPTRRHLK	8	Unmodified	_QPTRRHLK_					0	0	0		nc|ENSG00000121897|O43766-2|LIAS;nc|ENSG00000121897|O43766-3|LIAS;ENSG00000121897|ENST00000640888|LIAS	nc|ENSG00000121897|O43766-2|LIAS	nc|ENSG00000121897|O43766-2|LIAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7957763671875	2	518.312149	1034.60975	-0.14233	-7.3773E-05	-0.059886	-3.104E-05	-0.20222	-0.00010481	518.3121433283688	12.515	0.56641	12.447	12.196	12.762	-0.06806					48	18	5	0	0	0	0.344	1	185	185		2.5775	0	1	440650			35943	3017	21152	21153	43475	43475					0.09382495759723497
QPTRRWLHPL	10	Unmodified	_QPTRRWLHPL_					0	0	0			REV__ENST00000285689.7_2_5:125759302-125805397:+|nuORF	REV__ENST00000285689.7_2_5:125759302-125805397:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.5712585449219	3	435.250918	1302.73092	0.03282	1.4285E-05	0.43847	0.00019085	0.47129	0.00020513	435.25074017321657	19.749	0.75107	19.693	19.227	19.978	-0.055693					65	26	4	0	0	0	0.32095	1	2251	2251		3.0723	0.22898	1	235540	+		35944	19732	21153	21154	43476	43476					0.09166698402395923
QPTVRITEL	9	Unmodified	_QPTVRITEL_					0	0	0		ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8060913085938	2	528.806031	1055.59751	0.79811	0.00042205	-0.0068268	-3.6101E-06	0.79129	0.00041844	528.8059264769687	46.939	0.84943	46.939	46.618	47.468	0					73	29	3	0	0	0	0.05341	2	10580	10580;10632		51.63	23.143	1	3301700			35945	1798	21154	21155	43477;43478	43477					0.07193414506014051
QPTVRITEL	9	Unmodified	_QPTVRITEL_					0	0	0		ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8063354492188	2	528.806031	1055.59751	0.49975	0.00026427	0.13274	7.0194E-05	0.63249	0.00033447	528.8061441167414	46.842	1.0731	46.895	46.578	47.651	0.052574					93	39	3	0	0	0	0.03069	2	10563	10563;10611		60.074	25.672	1	3563800			35946	1798	21154	21155	43479;43480	43479					0.07193414506014051
QPTVRITEL	9	Unmodified	_QPTVRITEL_					0	0	0		ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8065795898438	2	528.806031	1055.59751	0.8574	0.0004534	-0.27091	-0.00014326	0.58649	0.00031014	528.8058969588735	46.92	1.1775	46.975	46.631	47.808	0.054371					97	42	3	0	0	0	0.05341	2	10599	10547;10599		51.63	18.844	1	3259100			35947	1798	21154	21155	43481;43482	43482					0.07193414506014051
QPVFDDQF	8	Unmodified	_QPVFDDQF_					0	0	0			REV__nc|ENSG00000188659|Q658L1-2|SAXO2	REV__nc|ENSG00000188659|Q658L1-2|SAXO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.33441162109375	2	498.227082	994.439611	0.41991	0.00020921	0.76071	0.00037901	1.1806	0.00058822	498.2271882544482	68.312	0.66417	68.293	67.988	68.652	-0.019157					51	23	3	0	0	0	0.31088	1	17175	17175		28.487	28.487	1	720310	+		35948	18564	21155	21156	43483	43483					-0.05783084753181811
QPVKKNTL	8	Unmodified	_QPVKKNTL_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3;chr6:131726200-131737355|507|34.85|0.76|5.53|+|ENST00000358229|ENPP3,ENPP3;chr6:131674410-131675080|489|21.47|0.5|5.41|+|ENST00000427707|ENPP3,ENPP3;chr6:131638576-131641455|492|26.46|0.42|5.97|+|ENST00000427707|ENPP3,ENPP3	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.27252197265625	2	464.284734	926.554916	-0.16978	-7.8827E-05	-0.70117	-0.00032554	-0.87095	-0.00040437	464.28431175707055	13.853	0.43628	13.787	13.687	14.124	-0.066068					28	14	3	0	0	0	0.42371	1	548	548		14.838	0	1	305100			35949	5119	21156	21157	43484	43484					0.0887006416847953
QPVKKNTL	8	Unmodified	_QPVKKNTL_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3;chr6:131726200-131737355|507|34.85|0.76|5.53|+|ENST00000358229|ENPP3,ENPP3;chr6:131674410-131675080|489|21.47|0.5|5.41|+|ENST00000427707|ENPP3,ENPP3;chr6:131638576-131641455|492|26.46|0.42|5.97|+|ENST00000427707|ENPP3,ENPP3	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	464.284734	926.554916	-0.33807	-0.00015696	-0.67267	-0.00031231	-1.0107	-0.00046927	464.2843248658458	13.782	0.36804	13.782	13.687	14.055	0	0.009466	-2.2912E-05	NaN	14.838	31	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280780			35950	5119	21156	21157							0.0887006416847953
QPVTATVAPFQ	11	Unmodified	_QPVTATVAPFQ_					0	0	0		ENSG00000134369|ENST00000685211|NAV1;ENST00000491403.1_1_1:201592576-201598640:+|nuORF	ENSG00000134369|ENST00000685211|NAV1	ENSG00000134369|ENST00000685211|NAV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3348999023438	2	579.811313	1157.60807	0.31229	0.00018107	2.8433	0.0016486	3.1556	0.0018297	579.8128347119626	59.104	0.27936	59.195	58.983	59.262	0.091305					12	9	2	0	0	0	0.32667	1	14318	14318		13.042	3.6593	1	91710			35951	3779	21157	21158	43485	43485					0.0355739716046628
QPYGGFLDI	9	Unmodified	_QPYGGFLDI_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2635498046875	2	505.2531	1008.49165	0.19899	0.00010054	0.82884	0.00041877	1.0278	0.00051931	505.2536708528759	76.318	1.2221	76.318	75.957	77.179	0					111	44	4	0	0	0	0.027237	1	19644	19644		61.357	3.8861	1	3007400			35952	7088	21158	21159	43486	43486					-0.01225921339425895
QPYGGFLDI	9	Unmodified	_QPYGGFLDI_					0	0	0		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.26373291015625	2	505.2531	1008.49165	0.38398	0.00019401	0.43628	0.00022043	0.82027	0.00041444	505.2533303318238	76.296	1.1096	76.265	75.881	76.991	-0.031487					115	40	4	0	0	0	0.027237	2	19666	19626;19666		61.357	52.268	1	2936300			35953	7088	21158	21159	43487;43488	43488					-0.01225921339425895
QPYLARRPKL	10	Unmodified	_QPYLARRPKL_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5873718261719	3	414.587418	1240.74043	0.1652	6.8492E-05	-0.46352	-0.00019217	-0.29832	-0.00012368	414.58731445265823	29.288	0.98989	29.288	28.76	29.75	0					82	35	3	0	0	0	0.29874	1	5222	5222		20.581	2.2078	1	510930			35954	654	21159	21160	43489	43489					0.1296846668794842
QPYLARRPKL	10	Unmodified	_QPYLARRPKL_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.5873718261719	3	414.587418	1240.74043	0.31691	0.00013139	-0.68847	-0.00028543	-0.37156	-0.00015404	414.58728339393474	29.224	1.0093	29.236	28.737	29.746	0.012266					86	34	3	0	0	0	0.29874	1	5215	5215		20.581	6.1756	1	436180			35955	654	21159	21160	43490	43490					0.1296846668794842
QPYLARRPKL	10	Unmodified	_QPYLARRPKL_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.5875244140625	3	414.587418	1240.74043	0.07754	3.2147E-05	-0.27449	-0.0001138	-0.19695	-8.1654E-05	414.5873336108565	29.339	0.95637	29.352	28.789	29.745	0.013474					83	33	4	0	0	0	0.25422	1	5227	5227		26.021	6.6588	1	522300			35956	654	21159	21160	43491	43491					0.1296846668794842
QPYMPIPHV	9	Oxidation (M)	_QPYM(Oxidation (M))PIPHV_		QPYM(1)PIPHV		QPYM(67)PIPHV	0	0	1		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2767944335938	2	549.276052	1096.53755	0.39094	0.00021474	0.94064	0.00051667	1.3316	0.00073141	549.2762502659227	44.168	0.61652	44.168	43.819	44.436	0					56	22	3	0	0	0	0.018072	2	9753	9753;9805		67.035	50.093	1	786550			35957	6771	21160	21161	43492;43493	43492		774			-0.00685599428857131
QPYPEILVV	9	Unmodified	_QPYPEILVV_					0	0	0		nc|ENSG00000104312|O43353-2|RIPK2;ENST00000522965.1_1_8:90770176-90802641:+|nuORF;ENSG00000104312|ENST00000220751|RIPK2	nc|ENSG00000104312|O43353-2|RIPK2	nc|ENSG00000104312|O43353-2|RIPK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3004150390625	2	529.30005	1056.58555	0.28622	0.0001515	0.46358	0.00024537	0.7498	0.00039687	529.3001378604499	76.084	1.4684	76.084	75.592	77.06	0					122	53	4	0	0	0	0.034444	3	19548	19506;19548;19592		58.679	16.584	1	2575500			35958	1877	21161	21162	43494;43495;43496	43495					0.059517977628502194
QPYPEILVV	9	Unmodified	_QPYPEILVV_					0	0	0		nc|ENSG00000104312|O43353-2|RIPK2;ENST00000522965.1_1_8:90770176-90802641:+|nuORF;ENSG00000104312|ENST00000220751|RIPK2	nc|ENSG00000104312|O43353-2|RIPK2	nc|ENSG00000104312|O43353-2|RIPK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3002319335938	2	529.30005	1056.58555	0.31074	0.00016447	0.4648	0.00024602	0.77554	0.00041049	529.3001477286628	75.974	1.5782	76.027	75.455	77.033	0.053413					106	56	4	0	0	0	0.034444	2	19541	19496;19541		58.679	22.635	1	2650700			35959	1877	21161	21162	43497;43498	43498					0.059517977628502194
QPYPEILVV	9	Unmodified	_QPYPEILVV_					0	0	0		nc|ENSG00000104312|O43353-2|RIPK2;ENST00000522965.1_1_8:90770176-90802641:+|nuORF;ENSG00000104312|ENST00000220751|RIPK2	nc|ENSG00000104312|O43353-2|RIPK2	nc|ENSG00000104312|O43353-2|RIPK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3004150390625	2	529.30005	1056.58555	0.49438	0.00026168	0.25415	0.00013452	0.74853	0.0003962	529.300033893973	76.113	1.3541	76.081	75.665	77.019	-0.031487					123	49	4	0	0	0	0.017391	1	19570	19570		68.081	23.674	1	2514600			35960	1877	21161	21162	43499	43499					0.059517977628502194
QPYPLPHV	8	Unmodified	_QPYPLPHV_					0	0	0		ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.2336730957031	2	475.758352	949.502152	0.40826	0.00019424	2.2371	0.0010643	2.6454	0.0012586	475.7593024001181	47.356	0.71264	47.356	47.137	47.849	0					40	25	2	0	0	0	0.34147	1	10859	10859		11.114	1.767	1	355960			35961	7117	21162	21163	43500	43500					0.02538106105657789
QPYPTLSTPL	10	Unmodified	_QPYPTLSTPL_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.8002319335938	2	558.800414	1115.58628	0.55021	0.00030746	-0.17279	-9.6554E-05	0.37742	0.0002109	558.800031285285	65.826	0.88557	65.826	65.431	66.317	0					77	31	4	0	0	0	0.020018	2	16423	16423;16473		71.708	45.44	1	1459900			35962	2497	21163	21164	43501;43502	43501					0.033105924118899566
QPYPTLSTPL	10	Unmodified	_QPYPTLSTPL_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8002319335938	2	558.800414	1115.58628	0.4681	0.00026158	-0.12993	-7.2607E-05	0.33817	0.00018897	558.800060178889	65.687	0.84577	65.776	65.434	66.279	0.088882					75	30	4	0	0	0	0.011792	1	16386	16386		80.676	50.835	1	1283300			35963	2497	21163	21164	43503	43503					0.033105924118899566
QPYPTLSTPL	10	Unmodified	_QPYPTLSTPL_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.8003540039062	2	558.800414	1115.58628	0.40723	0.00022756	-0.1863	-0.0001041	0.22093	0.00012346	558.8000730680687	65.814	0.8017	65.803	65.422	66.224	-0.011337					65	28	3	0	0	0	0.030754	2	16410	16410;16463		63.227	37.828	1	1328900			35964	2497	21163	21164	43504;43505	43504					0.033105924118899566
QPYYATRV	8	Unmodified	_QPYYATRV_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;nc|ENSG00000111679|P29350-2|PTPN6;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.25885009765625	2	499.258717	996.50288	0.64108	0.00032007	-1.1864	-0.00059234	-0.54535	-0.00027227	499.2582923300699	32.349	0.74749	32.349	32.064	32.811	0					56	26	3	0	0	0	0.41989	1	6176	6176		16.149	6.8017	1	277730			35965	10317	21164	21165	43506	43506					0.004489007547022084
QPYYATRV	8	Unmodified	_QPYYATRV_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;nc|ENSG00000111679|P29350-2|PTPN6;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.25872802734375	2	499.258717	996.50288	0.70081	0.00034989	-0.78175	-0.0003903	-0.08094	-4.041E-05	499.2583621600995	32.309	0.54896	32.364	32.126	32.675	0.055309					43	19	3	0	0	0	0.41989	1	6119	6119		16.149	6.8017	1	243000			35966	10317	21164	21165	43507	43507					0.004489007547022084
QPYYATRV	8	Unmodified	_QPYYATRV_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;nc|ENSG00000111679|P29350-2|PTPN6;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2591552734375	2	499.258717	996.50288	0.37791	0.00018867	-1.0753	-0.00053687	-0.69743	-0.0003482	499.25843990567375	32.279	0.68937	32.333	32.02	32.71	0.054375					49	24	3	0	0	0	0.41989	1	6172	6172		16.149	1.5674	1	291450			35967	10317	21164	21165	43508	43508					0.004489007547022084
QQAKRRLE	8	Unmodified	_QQAKRRLE_					0	0	0		nc|ENSG00000112242|O00716-2|E2F3	nc|ENSG00000112242|O00716-2|E2F3	nc|ENSG00000112242|O00716-2|E2F3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.8140258789062	2	514.801614	1027.58868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.555	1	12.458	11.958	12.958	-0.096607								0	0	0	0.37183	1	163	163		4.756	0	1				35968	12655	21165	21166	43509	43509					0.0759848566024175
QQARPTVI	8	Unmodified	_QQARPTVI_					0	0	0		ENSG00000131791|ENST00000254101|PRKAB2	ENSG00000131791|ENST00000254101|PRKAB2	ENSG00000131791|ENST00000254101|PRKAB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.793212890625	2	456.766709	911.518865	0.096465	4.4062E-05	1.7554	0.00080183	1.8519	0.00084589	456.7674191810972	31.188	0.23933	31.229	31.125	31.365	0.040989					12	8	2	0	0	0	0.34039	1	5793	5793		10.824	3.5347	1	63482			35969	3592	21166	21167	43510	43510					0.05956606991605895
QQDHSTLSK	9	Unmodified	_QQDHSTLSK_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2593383789062	2	522.259445	1042.50434	0.36509	0.00019067	-0.64415	-0.00033642	-0.27907	-0.00014575	522.2590485307187	24.124	1.0135	24.124	23.829	24.843	0					49	34	2	0	0	0	0.24467	2	3624	3624;3718		17.113	0	1	1349600			35970	7771	21167	21168	43511;43512	43511					-0.015215099471788562
QQDHSTLSK	9	Unmodified	_QQDHSTLSK_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2590942382812	2	522.259445	1042.50434	0.41041	0.00021434	-0.98943	-0.00051674	-0.57903	-0.0003024	522.2591014755425	24.283	1.0196	24.21	23.852	24.872	-0.072559					75	34	4	0	0	0	0.14786	3	3659	3659;3704;3749		31.268	2.7738	1	1446300			35971	7771	21167	21168	43513;43514;43515	43513					-0.015215099471788562
QQDHSTLSK	9	Unmodified	_QQDHSTLSK_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2593383789062	2	522.259445	1042.50434	0.3583	0.00018712	-0.9244	-0.00048278	-0.56611	-0.00029565	522.2591301082797	24.255	1.0052	24.216	23.878	24.883	-0.038927					72	34	4	0	0	0	0.17277	2	3691	3691;3736		27.629	2.6378	1	1386900			35972	7771	21167	21168	43516;43517	43516					-0.015215099471788562
QQDHSTLSK	9	Unmodified	_QQDHSTLSK_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	522.259445	1042.50434	0.36509	0.00019067	-0.64415	-0.00033642	-0.27907	-0.00014575	522.2590485307187	24.124	1.0135	24.124	23.829	24.843	0	-0.059227	0.00013919	NaN	31.268	49	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1349600			35973	7771	21167	21168							-0.015215099471788562
QQDHSTLSK	9	Unmodified	_QQDHSTLSK_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	522.259445	1042.50434	0.41041	0.00021434	-0.98943	-0.00051674	-0.57903	-0.0003024	522.2591014755425	24.283	1.0196	24.21	23.852	24.872	-0.072559	0.026785	-0.00022146	NaN	31.268	75	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1446300			35974	7771	21167	21168							-0.015215099471788562
QQDHSTLSK	9	Unmodified	_QQDHSTLSK_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.259445	1042.50434	0.3583	0.00018712	-0.9244	-0.00048278	-0.56611	-0.00029565	522.2591301082797	24.255	1.0052	24.216	23.878	24.883	-0.038927	0.032441	-0.00015353	NaN	31.268	72	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1386900			35975	7771	21167	21168							-0.015215099471788562
QQDLWLQYPQ	10	Unmodified	_QQDLWLQYPQ_					0	0	0		ENSG00000153404|ENST00000637938|PLEKHG4B	ENSG00000153404|ENST00000637938|PLEKHG4B	ENSG00000153404|ENST00000637938|PLEKHG4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.60845947265625	3	440.21906	1317.63535	0.27583	0.00012143	0.10373	4.5664E-05	0.37956	0.00016709	440.21913443060936	87.693	1.6048	87.693	86.832	88.437	0					104	75	2	0	0	0	0.32143	1	23298	23298		1.5923	0.13716	1	219680			35976	5076	21168	21169	43518	43518					-0.010761192991367352
QQECCCSL	8	Unmodified	_QQECCCSL_					0	0	0		ENSG00000168056|ENST00000301873|LTBP3;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENST00000530990.1_1_11:65308486-65309233:-|nuORF	ENSG00000168056|ENST00000301873|LTBP3	ENSG00000168056|ENST00000301873|LTBP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.1642761230469	2	457.164256	912.313959	-0.084455	-3.861E-05	-1.2634	-0.00057757	-1.3478	-0.00061618	457.1642589165183	25.608	3.2336	25.552	25.048	28.282	-0.055929					248	113	4	0	0	0	0.45015	1	4435	4435		5.7604	0	1	1600300			35977	6241	21169	21170	43519	43519					-0.1457057919693625
QQEDKLQPV	9	Unmodified	_QQEDKLQPV_					0	0	0		nc|ENSG00000188916|Q6ZSG2-2|INSYN2A;ENSG00000188916|ENST00000522781|INSYN2A	nc|ENSG00000188916|Q6ZSG2-2|INSYN2A	nc|ENSG00000188916|Q6ZSG2-2|INSYN2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3010864257812	2	542.785296	1083.55604	0.34053	0.00018484	0.29236	0.00015869	0.63289	0.00034352	542.785220874352	16.732	0.36161	16.618	16.362	16.723	-0.11434					23	12	3	0	0	0	0.26188	1	1375	1375		1.6526	0	1	66941			35978	7786	21170	21171	43520	43520					0.017602337466996687
QQETLCLDF	9	Unmodified	_QQETLCLDF_					0	0	0			REV__ENSG00000115364|ENST00000393909|MRPL19	REV__ENSG00000115364|ENST00000393909|MRPL19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3080444335938	2	548.752607	1095.49066	0.66912	0.00036718	-0.73988	-0.00040601	-0.070759	-3.8829E-05	548.7521137938327	83.222	0.7879	83.201	82.975	83.763	-0.020584					72	32	3	0	0	0	0.24993	1	21705	21705		13.042	13.042	1	762940	+		35979	14875	21171	21172	43521	43521					-0.0532650377065238
QQFSDYHSE	9	Unmodified	_QQFSDYHSE_					0	0	0		nc|ENSG00000276405|A0A0A6YYD4|TRBV13	nc|ENSG00000276405|A0A0A6YYD4|TRBV13	nc|ENSG00000276405|A0A0A6YYD4|TRBV13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.7899169921875	2	570.73326	1139.45197	0.46465	0.00026519	-1.1302	-0.00064506	-0.66559	-0.00037987	570.7322256895186	84.872	0.72787	84.872	84.612	85.34	0					48	27	2	0	0	0	0.25706	1	22244	22244		6.7232	0.96273	1	243480			35980	12997	21172	21173	43522	43522					-0.11218093080810831
QQFSDYHSE	9	Unmodified	_QQFSDYHSE_					0	0	0		nc|ENSG00000276405|A0A0A6YYD4|TRBV13	nc|ENSG00000276405|A0A0A6YYD4|TRBV13	nc|ENSG00000276405|A0A0A6YYD4|TRBV13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7899780273438	2	570.73326	1139.45197	0.58936	0.00033637	-1.0972	-0.00062622	-0.50786	-0.00028985	570.7322459275513	84.807	0.76638	84.888	84.541	85.308	0.080887					48	29	2	0	0	0	0.25622	1	22256	22256		7.2892	1.5288	1	192230			35981	12997	21172	21173	43523	43523					-0.11218093080810831
QQGIKKYYEEW	11	Unmodified	_QQGIKKYYEEW_					0	0	0			REV__nc|ENSG00000088247|Q92945|KHSRP	REV__nc|ENSG00000088247|Q92945|KHSRP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.7538146972656	3	491.245386	1470.71433	0.01716	8.4297E-06	1.7356	0.00085259	1.7527	0.00086102	491.5805614831641	28.388	0.58365	28.389	28.051	28.635	0.0004673					29	20	2	0	0	0	0.33236	1	4858	4858		4.4062	3.0765	1	154690	+		35982	14002	21173	21174	43524	43524					-0.002198920648652347
QQGNAPIPPPP	11	Unmodified	_QQGNAPIPPPP_					0	0	0			REV__ENST00000486613.6_1_X:70504267-70513876:+|nuORF	REV__ENST00000486613.6_1_X:70504267-70513876:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2962036132812	2	558.29583	1114.57711	0.40828	0.00022794	0.039797	2.2219E-05	0.44808	0.00025016	558.2957573705629	36.289	1.4279	36.289	35.635	37.063	0					113	51	3	0	0	0	0.14521	1	7353	7353		36.127	0	1	1597100	+		35983	16373	21174	21175	43525	43525					0.024402438462402642
QQHRFSYLGM	10	Unmodified	_QQHRFSYLGM_					0	0	0		nc|ENSG00000141052|Q8IZQ8-2|MYOCD;nc|ENSG00000141052|Q8IZQ8|MYOCD;ENSG00000141052|ENST00000425538|MYOCD	nc|ENSG00000141052|Q8IZQ8-2|MYOCD	nc|ENSG00000141052|Q8IZQ8-2|MYOCD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.54510498046875	3	422.873118	1265.59753	0.055527	2.3481E-05	0.90178	0.00038134	0.95731	0.00040482	423.2080175441911	55.573	0.34537	55.554	55.508	55.853	-0.019081					15	12	2	0	0	0	0.3179	1	13332	13332		8.9762	5.3892	1	313800			35984	4355	21175	21176	43526	43526					-0.02464908765614382
QQIVKGVELT	10	Unmodified	_QQIVKGVELT_					0	0	0			REV__nc|ENSG00000107223|O60869-2|EDF1	REV__nc|ENSG00000107223|O60869-2|EDF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2938842773438	2	557.826963	1113.63937	0.14517	8.0979E-05	-0.26699	-0.00014894	-0.12183	-6.7958E-05	557.8267711030386	26.076	0.99384	26.076	25.475	26.469	0					67	34	3	0	0	0	0.32132	1	4100	4100		1.4819	0	1	375120	+		35985	14548	21176	21177	43527	43527					0.08709970194558991
QQKAQQTV	8	Unmodified	_QQKAQQTV_					0	0	0			REV__ENST00000526047.1_1_11:74618188-74632322:-|nuORF	REV__ENST00000526047.1_1_11:74618188-74632322:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7534484863281	2	465.753798	929.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.058	1	15.944	15.444	16.444	-0.11434								0	0	0	0.33432	1	1215	1215		21.747	0.20967	1		+		35986	21959	21177	21178	43528	43528					0.02547712749344555
QQKQLQAPL	9	Unmodified	_QQKQLQAPL_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.8993530273438	2	527.306198	1052.59784	0.82076	0.00043279	-0.32602	-0.00017191	0.49475	0.00026088	527.305969762933	20.333	0.57321	20.28	20.065	20.638	-0.05291					35	20	2	0	0	0	0.26168	1	2601	2601		1.8442	0	1	192510	+		35987	15891	21178	21179	43529	43529					0.07364834225904815
QQKRVRGWW	9	Unmodified	_QQKRVRGWW_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3428955078125	2	622.343981	1242.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.039	1	97.11	96.61	97.61	0.070465								0	0	0	0.26334	1	25958	25958		2.0598	0	1				35988	8391	21179	21180	43530	43530					0.061778561968367285
QQLQAKNFE	9	Unmodified	_QQLQAKNFE_					0	0	0		ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3094482421875	2	553.285463	1104.55637	0.075876	4.1981E-05	-2.3589	-0.0013052	-2.2831	-0.0012632	553.2848168763483	27.427	0.59471	27.416	27.213	27.808	-0.01156					37	20	3	0	0	0	0.25202	1	4590	4590		10.824	0	1	350320			35989	2063	21180	21181	43531	43531					0.008276534665810686
QQLRARMW	8	Unmodified	_QQLRARMW_					0	0	0			REV__ENST00000554651.5_1_14:23417204-23426210:-|nuORF	REV__ENST00000554651.5_1_14:23417204-23426210:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.792236328125	2	544.792735	1087.57092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.96	1	119.96	119.46	120.46	0								0	0	0	0.37664	1	30929	30929		2.5775	0	1		+		35990	14074	21181	21182	43532	43532					0.030634471337180003
QQLRARMW	8	Unmodified	_QQLRARMW_					0	0	0			REV__ENST00000554651.5_1_14:23417204-23426210:-|nuORF	REV__ENST00000554651.5_1_14:23417204-23426210:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7919311523438	2	544.792735	1087.57092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.57	1	114.55	114.05	115.05	-0.019096								0	0	0	0.37664	1	29741	29741		2.5775	0	1		+		35991	14074	21181	21182	43533	43533					0.030634471337180003
QQLRARMW	8	Unmodified	_QQLRARMW_					0	0	0			REV__ENST00000554651.5_1_14:23417204-23426210:-|nuORF	REV__ENST00000554651.5_1_14:23417204-23426210:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7923583984375	2	544.792735	1087.57092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.4	1	117.37	116.87	117.87	-0.024147								0	0	0	0.37664	1	30387	30387		2.5775	0	1		+		35992	14074	21181	21182	43534	43534					0.030634471337180003
QQLRKKFYT	9	Unmodified	_QQLRKKFYT_					0	0	0			REV__ENSG00000175727|ENST00000319080|MLXIP	REV__ENSG00000175727|ENST00000319080|MLXIP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3701782226562	2	606.348397	1210.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.62	1	119.59	119.09	120.09	-0.024361								0	0	0	0.2672	1	30876	30876		0.52476	0	1		+		35993	17906	21182	21183	43535	43535					0.08532785042666546
QQLSLAVERE	10	Unmodified	_QQLSLAVERE_					0	0	0		nc|ENSG00000176155|Q2TAC2-2|CCDC57;nc|ENSG00000176155|Q2TAC2|CCDC57;ENSG00000176155|ENST00000694881|CCDC57	nc|ENSG00000176155|Q2TAC2-2|CCDC57	nc|ENSG00000176155|Q2TAC2-2|CCDC57	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8340454101562	2	586.817127	1171.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.076	1	82.145	81.645	82.645	0.068993								0	0	0	0.35611	1	21400	21400		12.241	1.4411	1				35994	6904	21183	21184	43536	43536					0.04075594183814246
QQLSLAVERE	10	Unmodified	_QQLSLAVERE_					0	0	0		nc|ENSG00000176155|Q2TAC2-2|CCDC57;nc|ENSG00000176155|Q2TAC2|CCDC57;ENSG00000176155|ENST00000694881|CCDC57	nc|ENSG00000176155|Q2TAC2-2|CCDC57	nc|ENSG00000176155|Q2TAC2-2|CCDC57	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.833740234375	2	586.817127	1171.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.701	1	82.774	82.274	83.274	0.073097								0	0	0	0.36581	1	21592	21592		8.1555	0	1				35995	6904	21183	21184	43537	43537					0.04075594183814246
QQLWYTHEK	9	Unmodified	_QQLWYTHEK_					0	0	0		ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF;UBTF|p.D239Tfs*5|1|0.25|ENSG00000108312|chr17:44212400-44212400|C/-|frameshift_variant	ENSG00000108312|ENST00000436088|UBTF	ENSG00000108312|ENST00000436088|UBTF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.9115295410156	3	411.540134	1231.59857	-1.31	-0.00053911	2.6573	0.0010936	1.3473	0.00055447	411.5412851505012	34.62	0.49138	34.695	34.383	34.874	0.075306					19	17	2	0	0	0	0.25323	1	6809	6809		6.6304	1.9145	1	58486			35996	2174	21184	21185	43538	43538					-0.007963711250795313
QQMKAKDLQR	10	Unmodified	_QQMKAKDLQR_					0	0	0		ENSG00000198286|ENST00000396946|CARD11;CARD11|p.H494Efs*37|1|0.09|ENSG00000198286|chr7:2934473-2934492|TCCTGCGCTGGGGCGGATGG/-|frameshift_variant	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.9017333984375	3	415.895923	1244.66594	0.12638	5.256E-05	-0.59342	-0.0002468	-0.46704	-0.00019424	415.89557789952227	29.187	1.3002	29.187	28.67	29.97	0					89	46	3	0	0	0	0.31658	1	5077	5077		12.228	2.4633	1	172960			35997	8060	21185	21186	43539	43539					0.053393358142329816
QQNEPLYPR	9	Unmodified	_QQNEPLYPR_					0	0	0		ENST00000477486.1_1_2:161223693-161223813:-|nuORF	ENST00000477486.1_1_2:161223693-161223813:-|nuORF	ENST00000477486.1_1_2:161223693-161223813:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2655639648438	2	572.790912	1143.56727	0.36467	0.00020888	-0.46413	-0.00026585	-0.099458	-5.6969E-05	572.7904765535988	29.966	0.45503	29.966	29.686	30.141	0					32	15	3	0	0	0	0.25779	1	5436	5436		6.2058	2.6093	1	106960			35998	10958	21186	21187	43540	43540					0.001230558408451543
QQNEPLYPR	9	Unmodified	_QQNEPLYPR_					0	0	0		ENST00000477486.1_1_2:161223693-161223813:-|nuORF	ENST00000477486.1_1_2:161223693-161223813:-|nuORF	ENST00000477486.1_1_2:161223693-161223813:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.266357421875	2	572.790912	1143.56727	0.41062	0.0002352	-0.27257	-0.00015613	0.13805	7.9074E-05	572.7908539625631	29.962	0.51748	29.974	29.685	30.202	0.012266					26	17	2	0	0	0	0.26031	1	5411	5411		3.5965	0	1	114040			35999	10958	21186	21187	43541	43541					0.001230558408451543
QQNEPLYPR	9	Unmodified	_QQNEPLYPR_					0	0	0		ENST00000477486.1_1_2:161223693-161223813:-|nuORF	ENST00000477486.1_1_2:161223693-161223813:-|nuORF	ENST00000477486.1_1_2:161223693-161223813:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2658081054688	2	572.790912	1143.56727	-0.027659	-1.5843E-05	-0.68013	-0.00038957	-0.70779	-0.00040542	572.7904689226033	29.955	0.40093	29.968	29.745	30.146	0.013474					27	13	3	0	0	0	0.25779	1	5404	5404		6.2058	0.97511	1	112000			36000	10958	21186	21187	43542	43542					0.001230558408451543
QQNISEIKR	9	Unmodified	_QQNISEIKR_					0	0	0			REV__nc|ENSG00000053747|Q16787-3|LAMA3	REV__nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.3272094726562	2	558.312012	1114.60947	0.1283	7.1631E-05	0.29472	0.00016454	0.42301	0.00023617	558.3120949220963	25.216	0.70238	25.16	24.918	25.62	-0.055931					54	24	3	0	0	0	0.33508	1	3958	3958		3.5965	0	1	298370	+		36001	13579	21187	21188	43543	43543					0.05675031249234053
QQNPRLVYV	9	Unmodified	_QQNPRLVYV_					0	0	0		nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	nc|ENSG00000160209|O00764-3|PDXK	nc|ENSG00000160209|O00764-3|PDXK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8116455078125	2	558.811648	1115.60874	0.44832	0.00025053	0.7	0.00039117	1.1483	0.0006417	558.8121146482218	42.067	0.71237	42.152	41.906	42.618	0.085197					40	25	3	0	0	0	0.12846	2	9102	9102;9151		34.102	7.2188	1	467420			36002	5446	21188	21189	43544;43545	43544					0.055562366001595365
QQNPRLVYV	9	Unmodified	_QQNPRLVYV_					0	0	0		nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK	nc|ENSG00000160209|O00764-3|PDXK	nc|ENSG00000160209|O00764-3|PDXK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.8119506835938	2	558.811648	1115.60874	0.42806	0.0002392	0.64778	0.00036199	1.0758	0.00060119	558.8118676437082	41.962	0.74493	42.059	41.841	42.586	0.096626					35	25	2	0	0	0	0.044952	1	9100	9100		54.774	22.468	1	678670			36003	5446	21188	21189	43546	43546					0.055562366001595365
QQPLLHLLE	9	Unmodified	_QQPLLHLLE_					0	0	0		ENST00000417220.6_1_3:51978121-51978467:+|nuORF	ENST00000417220.6_1_3:51978121-51978467:+|nuORF	ENST00000417220.6_1_3:51978121-51978467:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8182373046875	2	545.816399	1089.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.63	1	115.65	115.15	116.15	0.018738								0	0	0	0.26334	1	30026	30026		2.0598	0	1				36004	10331	21189	21190	43547	43547					0.07702004885732094
QQPSQQVQVQ	10	Unmodified	_QQPSQQVQVQ_					0	0	0			REV__ENSG00000198218|ENST00000395443|QRICH1	REV__ENSG00000198218|ENST00000395443|QRICH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8136596679688	2	585.299101	1168.58365	0.20203	0.00011825	-1.0776	-0.00063071	-0.87557	-0.00051247	585.2989928530284	93.766	0.87701	93.852	93.525	94.402	0.086678					143	68	3	0	0	0	0.34795	1	24958	24958		13.042	0	1	241860	+		36005	18810	21190	21191	43548	43548					0.006101370069472978
QQQLNWQS	8	Unmodified	_QQQLNWQS_					0	0	0			REV__ENST00000546538.1_1_19:16643407-16652813:-|nuORF	REV__ENST00000546538.1_1_19:16643407-16652813:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.248779296875	2	516.24888	1030.48321	-0.087703	-4.5277E-05	-0.48603	-0.00025091	-0.57374	-0.00029619	516.2488080485425	14.658	0.52413	14.591	14.32	14.845	-0.066068					51	18	4	0	0	0	0.46092	1	794	794		2.0598	0.21551	1	541680	+		36006	13970	21191	21192	43549	43549					-0.030814752560672787
QQQLVQIE	8	Unmodified	_QQQLVQIE_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2847595214844	2	493.269281	984.52401	0.53656	0.00026467	-0.27917	-0.0001377	0.25739	0.00012696	493.2690457868575	39.871	0.78503	39.964	39.662	40.448	0.09267					64	27	3	0	0	0	0.41758	1	8502	8502		16.942	0.79319	1	1932000	+		36007	14391	21192	21193	43550	43550					0.03112866063565889
QQQQSSTV	8	Unmodified	_QQQQSSTV_					0	0	0			REV__ENSG00000196859|ENST00000355612|KRT39	REV__ENSG00000196859|ENST00000355612|KRT39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.89947509765625	2	453.219788	904.425024	-0.018122	-8.2133E-06	0.0066271	3.0035E-06	-0.011495	-5.2098E-06	453.2197829484388	17.659	0.54128	17.541	17.386	17.928	-0.11739					43	18	3	0	0	0	0.3433	1	1669	1669		6.2058	0	1	186720	+	+	36008	13273	21193	21194	43551	43551					-0.03101156901311697
QQQQSSTV	8	Unmodified	_QQQQSSTV_					0	0	0			REV__ENSG00000196859|ENST00000355612|KRT39	REV__ENSG00000196859|ENST00000355612|KRT39	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	453.219788	904.425024	0.1154	5.2302E-05	-0.25909	-0.00011742	-0.14369	-6.5122E-05	453.21959468071964	17.474	0.61205	17.474	17.318	17.93	0	-0.064506	-8.8454E-05	NaN	6.2058	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131320	+	+	36009	13273	21193	21194							-0.03101156901311697
QQQQSSTV	8	Unmodified	_QQQQSSTV_					0	0	0			REV__ENSG00000196859|ENST00000355612|KRT39	REV__ENSG00000196859|ENST00000355612|KRT39	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	453.219788	904.425024	0.084353	3.823E-05	-0.22139	-0.00010034	-0.13704	-6.2109E-05	453.2196735554826	17.66	0.67228	17.6	17.384	18.056	-0.060429	0.061502	-5.4286E-05	NaN	6.2058	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166890	+	+	36010	13273	21193	21194							-0.03101156901311697
QQRKRIKVR	9	Unmodified	_QQRKRIKVR_					0	0	0		ENST00000537638.6_1_12:57881209-57881347:+|nuORF	ENST00000537638.6_1_12:57881209-57881347:+|nuORF	ENST00000537638.6_1_12:57881209-57881347:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2245178222656	3	404.598429	1210.77346	-0.34001	-0.00013757	3.2167	0.0013015	2.8766	0.0011639	404.59977754532605	17.789	0.25834	17.672	17.467	17.726	-0.11739					9	8	2	0	0	0	0.2615	1	1719	1719		2.4985	0	1	17871			36011	11692	21194	21195	43552	43552					0.17650093530642152
QQRLWRNK	8	Unmodified	_QQRLWRNK_					0	0	0			REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.3412475585938	2	564.822881	1127.63121	0.14942	8.4394E-05	-0.064134	-3.6224E-05	0.085283	4.817E-05	564.8226626371411	16.163	0.46024	16.1	15.838	16.298	-0.062532					19	15	2	0	0	0	0.34437	1	1243	1243		0.69038	0	1	17558	+		36012	18118	21195	21196	43553	43553					0.0724988078845854
QQRQREEEEQ	10	Unmodified	_QQRQREEEEQ_					0	0	0			REV__ENSG00000084092|ENST00000264230|NOA1	REV__ENSG00000084092|ENST00000264230|NOA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2564392089844	3	453.879766	1358.61747	-0.055476	-2.5179E-05	-0.68572	-0.00031123	-0.7412	-0.00033641	453.8795463606721	22.91	0.28197	22.822	22.736	23.018	-0.08761					11	9	2	0	0	0	0.32148	1	3334	3334		1.4551	0.49284	1	23845	+		36013	13943	21196	21197	43554	43554					-0.0474948629193932
QQRRRDQS	8	Unmodified	_QQRRRDQS_					0	0	0			REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2997436523438	2	537.281577	1072.5486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.706	1	13.604	13.104	14.104	-0.10174								0	0	0	0.35466	1	507	507		12.532	0.89125	1		+		36014	13952	21197	21198	43555	43555					0.015229389896603607
QQRRRRRRDP	10	Unmodified	_QQRRRRRRDP_					0	0	0		ENSG00000113593|ENST00000261308|PPWD1;ENST00000508982.1_1_5:64859104-64863443:+|nuORF	ENSG00000113593|ENST00000261308|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.2781982421875	3	475.278641	1422.81409	0.30941	0.00014706	-0.69999	-0.00033269	-0.39058	-0.00018563	475.2782623211067	55.113	1.3818	55.113	54.526	55.907	0					156	50	4	0	0	0	0.41025	1	13126	13126		1.5923	0.37745	1	2747500			36015	2515	21198	21199	43556	43556					0.11959827902978759
QQRRRRRRDP	10	Unmodified	_QQRRRRRRDP_					0	0	0		ENSG00000113593|ENST00000261308|PPWD1;ENST00000508982.1_1_5:64859104-64863443:+|nuORF	ENSG00000113593|ENST00000261308|PPWD1	ENSG00000113593|ENST00000261308|PPWD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.2782897949219	3	475.278641	1422.81409	0.37866	0.00017997	-0.62778	-0.00029837	-0.24912	-0.0001184	475.2782316305637	55.317	1.1796	55.298	54.869	56.048	-0.019081					135	43	4	0	0	0	0.41025	1	13166	13166		1.5923	0.37745	1	2767500			36016	2515	21198	21199	43557	43557					0.11959827902978759
QQSFLHYYLL	10	Unmodified	_QQSFLHYYLL_					0	0	0			REV__ENST00000475426.1_1_1:42898780-42901095:-|nuORF	REV__ENST00000475426.1_1_1:42898780-42901095:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2633361816406	3	437.895917	1310.66592	-0.32641	-0.00014293	-2.3266	-0.0010188	-2.653	-0.0011618	437.8949832446772	38.691	0.49798	38.691	38.46	38.958	0					26	17	2	0	0	0	0.31994	1	8115	8115		1.4551	0	1	162440	+		36017	21406	21199	21200	43558	43558					0.023016590859015196
QQSKKNFD	8	Unmodified	_QQSKKNFD_					0	0	0		ENST00000396253.7_1_11:18319238-18320375:-|nuORF	ENST00000396253.7_1_11:18319238-18320375:-|nuORF	ENST00000396253.7_1_11:18319238-18320375:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7511291503906	2	497.751256	993.487959	0.16838	8.3813E-05	0.056619	2.8182E-05	0.225	0.00011199	497.7512032586718	15.143	0.56041	15.033	14.847	15.408	-0.10982					41	19	3	0	0	0	0.45431	1	1024	1024		4.3292	0.38484	1	375230			36018	10108	21200	21201	43559	43559					-0.009045911132830042
QQSPEAPEWF	10	Unmodified	_QQSPEAPEWF_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.7755126953125	2	609.774928	1217.5353	0.020362	1.2416E-05	0.65961	0.00040221	0.67997	0.00041463	609.7751701321683	61.874	0.65401	61.971	61.729	62.383	0.096985					48	23	3	0	0	0	0.37751	1	15204	15204		7.609	1.4032	1	353650	+		36019	22909	21201	21202	43560	43560					-0.06476356632970237
QQSRRRRLI	9	Unmodified	_QQSRRRRLI_					0	0	0			REV__ENSG00000197980|ENST00000356539|LEKR1	REV__ENSG00000197980|ENST00000356539|LEKR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8724975585938	2	606.873437	1211.73232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.82	1	116.82	116.32	117.32	0								0	0	0	0.2672	1	30232	30232		0.52476	0.12405	1		+		36020	18786	21202	21203	43561	43561					0.13492332491182424
QQTVTIPPKSS	11	Unmodified	_QQTVTIPPKSS_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8294677734375	2	593.327328	1184.6401	0.67188	0.00039865	0.56656	0.00033616	1.2384	0.0007348	593.3278900351386	84.521	0.60991	84.602	84.303	84.912	0.080887					33	23	2	0	0	0	0.33282	1	22163	22163		2.4985	0.84587	1	215300			36021	3225	21203	21204	43562	43562					0.05516764843605415
QQVETLQKE	9	Unmodified	_QQVETLQKE_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.75439453125	2	551.790578	1101.5666	0.046106	2.5441E-05	0.30567	0.00016866	0.35177	0.00019411	551.7905314831597	27.606	0.49276	27.595	27.374	27.867	-0.01156					22	16	2	0	0	0	0.25526	1	4781	4781		7.9102	0	1	88747			36022	3688	21204	21205	43563	43563					0.019882164011505665
QQWHLDLVQLI	11	Unmodified	_QQWHLDLVQLI_					0	0	0		ENSG00000113048|ENST00000261413|MRPS27;nc|ENSG00000113048|Q92552-2|MRPS27;ENST00000515226.5_1_5:71516738-71522904:-|nuORF	ENSG00000113048|ENST00000261413|MRPS27	ENSG00000113048|ENST00000261413|MRPS27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2747497558594	3	464.925988	1391.75613	-0.38111	-0.00017719	-0.8152	-0.00037901	-1.1963	-0.0005562	465.26025997847563	39.267	0.82027	39.267	38.903	39.723	0					43	29	2	0	0	0	0.44966	1	8343	8343		4.7159	0	1	224410			36023	2472	21205	21206	43564	43564					0.07592708414313165
QQWQKQHKP	9	Unmodified	_QQWQKQHKP_					0	0	0			REV__L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|152|3|sense	REV__L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|152|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.2158203125	3	403.215873	1206.62579	-0.24034	-9.691E-05	0.51279	0.00020676	0.27244	0.00010985	403.21579918930126	21.898	1.6438	21.849	21.461	23.105	-0.049377					86	58	3	0	0	0	0.34243	2	3191	3103;3191		2.4985	0.41248	1	1719300	+		36024	22778	21206	21207	43565;43566	43566					0.03074157205969641
QQYAVFENIF	10	Unmodified	_QQYAVFENIF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.8086547851562	2	629.808771	1257.60299	0.57052	0.00035932	-0.86197	-0.00054288	-0.29145	-0.00018356	629.8081475050861	64.536	0.49244	64.536	64.288	64.781	0					40	17	3	0	0	0	0.34795	1	16065	16065		13.042	0	1	402810	+		36025	15889	21207	21208	43567	43567					-0.015509067021639567
QQYAVFENIF	10	Unmodified	_QQYAVFENIF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.8086547851562	2	629.808771	1257.60299	0.42897	0.00027017	0.21051	0.00013258	0.63948	0.00040275	629.8087371637728	68.829	0.67042	68.829	68.643	69.313	0					53	23	3	0	0	0	0.24105	1	17358	17358		27.629	9.4825	1	596640	+		36026	15889	21207	21208	43568	43568					-0.015509067021639567
QQYAVFENIF	10	Unmodified	_QQYAVFENIF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.25390625	2	629.808771	1257.60299	0.57052	0.00035932	-0.86197	-0.00054288	-0.29145	-0.00018356	629.8081475050861	64.536	0.49244	64.536	64.288	64.781	0					40	17	3	0	0	0	0.31889	1	16015	16015		6.2058	0	1	402810	+		36027	15889	21207	21208	43569	43569					-0.015509067021639567
QQYAVFENIF	10	Unmodified	_QQYAVFENIF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.8087158203125	2	629.808771	1257.60299	0.36718	0.00023125	-0.642	-0.00040434	-0.27482	-0.00017309	629.8083302883439	64.458	0.58807	64.551	64.234	64.822	0.092888					49	21	3	0	0	0	0.19885	1	16029	16029		32.786	14.639	1	547570	+		36028	15889	21207	21208	43570	43570					-0.015509067021639567
QQYAVFENIF	10	Unmodified	_QQYAVFENIF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.808837890625	2	629.808771	1257.60299	0.27511	0.00017326	0.39567	0.0002492	0.67078	0.00042246	629.809021939036	68.809	0.81623	68.881	68.618	69.434	0.071938					57	29	3	0	0	0	0.24105	1	17348	17348		27.629	9.4825	1	531290	+		36029	15889	21207	21208	43571	43571					-0.015509067021639567
QQYAVFENIF	10	Unmodified	_QQYAVFENIF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.2532958984375	2	629.808771	1257.60299	0.36718	0.00023125	-0.642	-0.00040434	-0.27482	-0.00017309	629.8083302883439	64.458	0.58807	64.551	64.234	64.822	0.092888					49	21	3	0	0	0	0.31039	1	16012	16012		18.146	0	1	547570	+		36030	15889	21207	21208	43572	43572					-0.015509067021639567
QQYAVFENIF	10	Unmodified	_QQYAVFENIF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.8082885742188	2	629.808771	1257.60299	0.48776	0.0003072	-0.49822	-0.00031379	-0.010464	-6.5901E-06	629.8083278853439	64.544	0.63475	64.534	64.26	64.895	-0.0095291					59	22	3	0	0	0	0.24105	1	16044	16044		27.629	3.6082	1	800200	+		36031	15889	21207	21208	43573	43573					-0.015509067021639567
QQYAVFENIF	10	Unmodified	_QQYAVFENIF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.8088989257812	2	629.808771	1257.60299	0.33736	0.00021247	0.25655	0.00016158	0.5939	0.00037405	629.8087392882198	68.911	0.70278	68.892	68.624	69.327	-0.019157					55	24	3	0	0	0	0.24105	2	17367	17367;17418		27.629	9.4825	1	625270	+		36032	15889	21207	21208	43574;43575	43574					-0.015509067021639567
QQYAVFENIF	10	Unmodified	_QQYAVFENIF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.25341796875	2	629.808771	1257.60299	0.48776	0.0003072	-0.49822	-0.00031379	-0.010464	-6.5901E-06	629.8083278853439	64.544	0.63475	64.534	64.26	64.895	-0.0095291					59	22	3	0	0	0	0.3144	1	16000	16000		13.042	0	1	800200	+		36033	15889	21207	21208	43576	43576					-0.015509067021639567
QQYAVFENIF	10	Unmodified	_QQYAVFENIF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	629.808771	1257.60299	0.42897	0.00027017	0.21051	0.00013258	0.63948	0.00040275	629.8087371637728	68.829	0.67042	68.829	68.643	69.313	0	-0.038235	-0.00010344	NaN	27.629	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	596640	+		36034	15889	21207	21208							-0.015509067021639567
QQYAVFENIF	10	Unmodified	_QQYAVFENIF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	629.808771	1257.60299	0.27511	0.00017326	0.39567	0.0002492	0.67078	0.00042246	629.809021939036	68.809	0.81623	68.881	68.618	69.434	0.071938	0.013326	0.0001298	NaN	27.629	57	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	531290	+		36035	15889	21207	21208							-0.015509067021639567
QQYAVFENIF	10	Unmodified	_QQYAVFENIF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	629.808771	1257.60299	0.33736	0.00021247	0.25655	0.00016158	0.5939	0.00037405	629.8087392882198	68.911	0.70278	68.892	68.624	69.327	-0.019157	0.024909	-4.5443E-05	NaN	27.629	55	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	625270	+		36036	15889	21207	21208							-0.015509067021639567
QQYRPYSF	8	Unmodified	_QQYRPYSF_					0	0	0		ENSG00000144029|ENST00000272418|MRPS5;nc|ENSG00000144029|P82675-2|MRPS5;ENST00000475895.5_1_2:95770271-95787536:-|nuORF	ENSG00000144029|ENST00000272418|MRPS5	ENSG00000144029|ENST00000272418|MRPS5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7487182617188	2	544.761623	1087.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.604	1	50.649	50.149	51.149	0.044891								0	0	0	0.35014	1	11746	11746		14.582	1.0738	1				36037	4559	21208	21209	43577	43577					-0.03156000733633846
QRAQGRGYAR	10	Unmodified	_QRAQGRGYAR_					0	0	0			REV__ENST00000539246.5_1_11:61286101-61314074:-|nuORF	REV__ENST00000539246.5_1_11:61286101-61314074:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.2847290039062	2	581.813045	1161.61154	-0.018092	-1.0526E-05	2.1901	0.0012742	2.172	0.0012637	581.8142077556813	14.473	0.19944	14.473	14.423	14.623	0					9	6	2	0	0	0	0.32132	1	748	748		1.4819	0.28856	1	18848	+		36038	13429	21209	21210	43578	43578					0.03719504777700422
QRARQIAAKIG	11	Unmodified	_QRARQIAAKIG_					0	0	0		nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP;ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3706665039062	2	606.370195	1210.72584	0.64072	0.00038851	-0.095332	-5.7806E-05	0.54539	0.00033071	606.36993872621	86.778	1.4348	86.778	86.149	87.584	0					145	59	4	0	0	0	0.45202	2	22757	22757;22805		8.7454	0	1	1446600			36039	1318	21210	21211	43579;43580	43579					0.12890394539772387
QRARQIAAKIG	11	Unmodified	_QRARQIAAKIG_					0	0	0		nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP;ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3701782226562	2	606.370195	1210.72584	0.54971	0.00033333	-0.35687	-0.00021639	0.19284	0.00011693	606.3698124394905	86.859	2.3907	86.946	86.728	89.119	0.08709					235	111	4	0	0	0	0.43198	3	22882	22839;22882;22933		8.7454	0	1	1359800			36040	1318	21210	21211	43581;43582;43583	43582					0.12890394539772387
QRARQIAAKIG	11	Unmodified	_QRARQIAAKIG_					0	0	0		nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP;ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1	nc|ENSG00000088247|Q92945|KHSRP	nc|ENSG00000088247|Q92945|KHSRP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3702392578125	2	606.370195	1210.72584	0.45985	0.00027884	-0.18945	-0.00011488	0.2704	0.00016396	606.3699776312902	86.955	2.1455	86.949	86.188	88.334	-0.0056229					252	99	4	0	0	0	0.40701	1	22937	22937		8.7454	0	1	1359200			36041	1318	21210	21211	43584	43584					0.12890394539772387
QRCIPCSI	8	Unmodified	_QRCIPCSI_					0	0	0			REV__nc|ENSG00000120925|Q96K19-6|RNF170	REV__nc|ENSG00000120925|Q96K19-6|RNF170	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.6025085449219	2	460.228048	918.441542	-0.016961	-7.8059E-06	-0.30876	-0.0001421	-0.32572	-0.00014991	460.22770417470895	17.705	0.967	17.705	17.452	18.419	0					67	32	4	0	0	0	0.34167	1	1760	1760		11.64	0	1	446830	+		36042	15102	21211	21212	43585	43585					-0.020940705406019333
QRCNRQLDEL	10	Unmodified	_QRCNRQLDEL_					0	0	0			REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.547119140625	3	425.547182	1273.61972	-0.21879	-9.3104E-05	0.46533	0.00019802	0.24654	0.00010491	425.54732664617177	38.347	0.78164	38.347	38.092	38.873	0					63	27	3	0	0	0	0.35231	1	7976	7976		7.4771	0.37534	1	1260300	+		36043	14784	21212	21213	43586	43586					-0.0061472908782889135
QRDEYWAIPI	10	Unmodified	_QRDEYWAIPI_					0	0	0			REV__ENSG00000113924|ENST00000283871|HGD	REV__ENSG00000113924|ENST00000283871|HGD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.88824462890625	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.03	1	25.03	24.53	25.53	0								0	0	0	0.37664	1	3929	3929		1.7423	0.63252	1		+		36044	14823	21213	21214	43587	43587					0.0072018456346540916
QRDINLSSL	9	Unmodified	_QRDINLSSL_					0	0	0		ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2861328125	2	523.285463	1044.55637	0.55619	0.00029104	0.10746	5.6231E-05	0.66364	0.00034727	523.2855639720234	30.354	0.44689	30.354	30.141	30.587	0					37	15	3	0	0	0	0.13748	1	5549	5549		32.786	0	1	296790			36045	4948	21214	21215	43588	43588					0.03587653466570373
QRENPQDRIF	10	Unmodified	_QRENPQDRIF_					0	0	0			REV__ENSG00000154310|ENST00000436636|TNIK	REV__ENSG00000154310|ENST00000436636|TNIK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.88214111328125	3	434.889825	1301.64765	-0.015498	-6.7399E-06	-0.061737	-2.6849E-05	-0.077235	-3.3589E-05	435.22403669102204	24.229	0.82725	24.157	23.756	24.584	-0.072559					54	27	3	0	0	0	0.3994	1	3778	3778		3.5871	0.5148	1	103360	+		36046	16660	21215	21216	43589	43589					0.008889171638884363
QRFAELLSTK	10	Unmodified	_QRFAELLSTK_					0	0	0		nc|ENSG00000166349|P15918-2|RAG1;ENSG00000166349|ENST00000299440|RAG1	nc|ENSG00000166349|P15918-2|RAG1	nc|ENSG00000166349|P15918-2|RAG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.8375854492188	2	596.837862	1191.66117	-0.039478	-2.3562E-05	-0.068999	-4.1181E-05	-0.10848	-6.4743E-05	596.8376651437812	12.277	0.17274	12.209	12.14	12.313	-0.06806					8	5	2	0	0	0	0.41701	1	104	104		0.35063	0	1	37955			36047	6067	21216	21217	43590	43590					0.073007749431099
QRFARHVAL	9	Unmodified	_QRFARHVAL_					0	0	0			REV__ENSG00000129673|ENST00000392492|AANAT	REV__ENSG00000129673|ENST00000392492|AANAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3054809570312	2	549.319974	1096.6254	0.36569	0.00020088	1.9192	0.0010543	2.2849	0.0012551	549.3210465246652	67.07	0.48189	67.07	66.856	67.338	0					28	16	2	0	0	0	0.24581	1	16833	16833		16.942	3.8998	1	190300	+		36048	15426	21217	21218	43591	43591					0.08094782276793921
QRFARHVAL	9	Unmodified	_QRFARHVAL_					0	0	0			REV__ENSG00000129673|ENST00000392492|AANAT	REV__ENSG00000129673|ENST00000392492|AANAT	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	549.319974	1096.6254	0.36569	0.00020088	1.9192	0.0010543	2.2849	0.0012551	549.3210465246652	67.07	0.48189	67.07	66.856	67.338	0	-0.0075114	-0.00038503	NaN	16.942	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190300	+		36049	15426	21217	21218							0.08094782276793921
QRFARHVAL	9	Unmodified	_QRFARHVAL_					0	0	0			REV__ENSG00000129673|ENST00000392492|AANAT	REV__ENSG00000129673|ENST00000392492|AANAT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	549.319974	1096.6254	0.43548	0.00023922	2.4049	0.0013211	2.8404	0.0015603	549.3211502102121	66.959	0.42542	67.043	66.877	67.302	0.083832	-0.034756	0.00014853	NaN	16.942	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212530	+		36050	15426	21217	21218							0.08094782276793921
QRFARHVAL	9	Unmodified	_QRFARHVAL_					0	0	0			REV__ENSG00000129673|ENST00000392492|AANAT	REV__ENSG00000129673|ENST00000392492|AANAT	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.319974	1096.6254	0.27132	0.00014904	2.3986	0.0013176	2.6699	0.0014666	549.3214070892059	67.136	0.43658	67.12	66.921	67.357	-0.016296	0.042267	0.00014159	NaN	16.942	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175740	+		36051	15426	21217	21218							0.08094782276793921
QRFEEYMKKNF	11	Unmodified	_QRFEEYMKKNF_					0	0	0			REV__nc|ENSG00000138709|Q659C4-9|LARP1B	REV__nc|ENSG00000138709|Q659C4-9|LARP1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.5846252441406	3	507.250254	1518.72893	0.44709	0.00022679	-0.38264	-0.00019409	0.064452	3.2693E-05	507.249980032443	32.703	1.5032	32.703	31.953	33.456	0					134	53	4	0	0	0	0.45202	1	6266	6266		4.4062	0	1	637580	+		36052	15949	21218	21219	43592	43592					-0.009681431883791447
QRFEEYMKKNF	11	Unmodified	_QRFEEYMKKNF_					0	0	0			REV__nc|ENSG00000138709|Q659C4-9|LARP1B	REV__nc|ENSG00000138709|Q659C4-9|LARP1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	507.250254	1518.72893	0.44709	0.00022679	-0.38264	-0.00019409	0.064452	3.2693E-05	507.249980032443	32.703	1.5032	32.703	31.953	33.456	0	0.11761	0.00014394	NaN	4.4062	134	53	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	637580	+		36053	15949	21218	21219							-0.009681431883791447
QRFELHKRAQ	10	Unmodified	_QRFELHKRAQ_					0	0	0		ENSG00000120162|ENST00000262244|MOB3B	ENSG00000120162|ENST00000262244|MOB3B	ENSG00000120162|ENST00000262244|MOB3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2104187011719	3	438.245944	1311.716	-0.033051	-1.4484E-05	2.2318	0.00097808	2.1988	0.00096359	438.2468645084174	24.743	0.70437	24.687	24.514	25.219	-0.055931					31	24	2	0	0	0	0.32116	1	3931	3931		2.6312	0.88896	1	47155			36054	2932	21219	21220	43593	43593					0.07261206534440134
QRHLWLQR	8	Unmodified	_QRHLWLQR_					0	0	0		ENST00000492871.5_1_1:228328930-228336395:+|nuORF;ENST00000485838.5_1_1:228327993-228336550:+|nuORF	ENST00000492871.5_1_1:228328930-228336395:+|nuORF	ENST00000492871.5_1_1:228328930-228336395:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.845458984375	2	568.825424	1135.63629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.983	1	34.049	33.549	34.549	0.06636								0	0	0	0.36336	1	6652	6652		8.5933	1.304	1				36055	11100	21220	21221	43594	43594					0.07390184651080745
QRHRLKVMAV	10	Unmodified	_QRHRLKVMAV_					0	0	0			REV__ENST00000262844.9_1_X:109441588-109441660:-|nuORF	REV__ENST00000262844.9_1_X:109441588-109441660:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8700561523438	2	619.369141	1236.72373	0.11984	7.4222E-05	1.1186	0.00069285	1.2385	0.00076707	619.3707405203077	91.712	1.9109	91.803	91.166	93.077	0.090675					275	137	3	0	0	0	0.40992	1	24491	24491		1.6526	0	1	768030	+		36056	19610	21221	21222	43595	43595					0.11483642530333782
QRIGKPGIV	9	Unmodified	_QRIGKPGIV_					0	0	0			REV__nc|ENSG00000120899|Q14289-2|PTK2B	REV__nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7853698730469	2	484.306001	966.597449	-0.1234	-5.9762E-05	0.59527	0.00028829	0.47187	0.00022853	484.3063140079416	13.184	0.22402	13.117	12.965	13.189	-0.067496					11	7	2	0	0	0	0.26168	1	310	310		1.8442	0	1	17781	+		36057	15100	21222	21223	43596	43596					0.11281459296719731
QRILQHVVVN	10	Unmodified	_QRILQHVVVN_					0	0	0		ENST00000485050.5_1_3:113775591-113775684:+|nuORF	ENST00000485050.5_1_3:113775591-113775684:+|nuORF	ENST00000485050.5_1_3:113775591-113775684:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3486938476562	2	603.359296	1204.70404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.93	1	94.016	93.516	94.516	0.08667								0	0	0	0.38166	1	25033	25033		1.4819	0	1				36058	11084	21223	21224	43597	43597					0.10987589791238861
QRKGKKPQL	9	Unmodified	_QRKGKKPQL_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.8433837890625	2	541.843282	1081.67201	0.12749	6.908E-05	-0.086398	-4.6814E-05	0.041093	2.2266E-05	541.8431771096095	12.766	0.34028	12.766	12.612	12.952	0					18	11	2	0	0	0	0.34681	1	240	240		1.8442	0.36234	1	102510	+		36059	17248	21224	21225	43598	43598					0.1344422210806897
QRKKGKKKG	9	Unmodified	_QRKKGKKKG_					0	0	0		ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000524474.5_1_11:720617-722550:+|nuORF;EPS8L2|p.S310Ifs*2|1|0.2|ENSG00000177106|chr11:721934-721935|-/A|frameshift_variant	ENST00000526909.5_1_11:710402-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.294189453125	2	529.351274	1056.688	0.15863	8.3972E-05	-2.3964	-0.0012685	-2.2378	-0.0011846	529.3498774946132	12.946	0.15595	12.946	12.847	13.003	0					7	5	2	0	0	0	0.26257	1	282	282		0.52476	0.066424	1	12154			36060	6962	21225	21226	43599	43599					0.16191928344983353
QRKLSNYALDA	11	Unmodified	_QRKLSNYALDA_					0	0	0			REV__ENSG00000167306|ENST00000285039|MYO5B	REV__ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	639.8441772460938	2	639.843676	1277.6728	0.52397	0.00033526	-0.59094	-0.00037811	-0.066976	-4.2854E-05	639.8434770334056	90.936	0.69865	91.027	90.766	91.465	0.090675					260	51	7	0	0	0	0.42762	1	24193	24193		7.609	0	1	10974000	+		36061	17375	21226	21227	43600	43600					0.04506971966452511
QRKNRQHLKRR	11	Unmodified	_QRKNRQHLKRR_					0	0	0			REV__KTN1|p.T183Lfs*41|1|0.58|ENSG00000126777|chr14:55616538-55616538|A/-|frameshift_variant	REV__KTN1|p.T183Lfs*41|1|0.58|ENSG00000126777|chr14:55616538-55616538|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.3099365234375	3	507.309941	1518.90799	0.18522	9.3963E-05	-0.0203	-1.0299E-05	0.16492	8.3664E-05	507.3098038177049	95.171	1.5453	95.254	94.991	96.536	0.082779					453	142	5	0	0	0	0.48486	4	25388	25388;25540;25580;25619		0.094841	0.011491	1	2569200	+		36062	22775	21227	21228	43601;43602;43603;43604	43601					0.16929547005224777
QRKTTNPL	8	Unmodified	_QRKTTNPL_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2772521972656	2	479.277441	956.540328	0.40291	0.00019311	-0.32342	-0.00015501	0.079487	3.8097E-05	479.2771460947946	86.729	1.3488	86.724	86.342	87.691	-0.0056229					125	59	3	0	0	0	0.45431	1	22829	22829		4.3292	0	1	510620			36063	1058	21228	21229	43605	43605					0.06031992020314192
QRKVFYFV	8	Unmodified	_QRKVFYFV_					0	0	0			REV__nc|ENSG00000078269|O15056-3|SYNJ2	REV__nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8355712890625	2	543.808377	1085.6022	0.26295	0.00014299	-1.9036	-0.0010352	-1.6406	-0.00089218	543.8068564854174	14.489	0.40496	14.384	14.049	14.454	-0.10466					18	13	2	0	0	0	0.34408	1	701	701		2.3027	0.82083	1	49145	+		36064	13855	21229	21230	43606	43606					0.06282343439465876
QRLEEIAEDP	10	Unmodified	_QRLEEIAEDP_					0	0	0		ENSG00000197273|ENST00000357001|GUCA2A	ENSG00000197273|ENST00000357001|GUCA2A	ENSG00000197273|ENST00000357001|GUCA2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.7984619140625	2	600.298767	1198.58298	0.63864	0.00038338	-0.61012	-0.00036625	0.028524	1.7123E-05	600.2987725215963	21.553	1.4698	21.452	20.789	22.259	-0.10034					130	52	5	0	0	0	0.38515	1	2791	2791		6.2058	0	1	1548800			36065	7948	21230	21231	43607	43607					-0.008367024327753825
QRLLPQRF	8	Unmodified	_QRLLPQRF_					0	0	0		ENST00000399640.3_1_8:134471412-134471994:-|nuORF	ENST00000399640.3_1_8:134471412-134471994:-|nuORF	ENST00000399640.3_1_8:134471412-134471994:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3062744140625	2	529.3169	1056.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.81	1	111.83	111.33	112.33	0.0131								0	0	0	0.37724	1	29107	29107		2.3027	0	1				36066	10179	21231	21232	43608	43608					0.09320264045254589
QRLQEPLVPVA	11	Unmodified	_QRLQEPLVPVA_					0	0	0		nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.3673706054688	2	625.366787	1248.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.095	1	98.156	97.656	98.656	0.061516								0	0	0	0.37548	1	26250	26250		2.9952	0	1				36067	5386	21232	21233	43609	43609					0.10461036868582596
QRLQRRQLWWR	11	Unmodified	_QRLQRRQLWWR_					0	0	0			REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.22314453125	3	542.646442	1624.9175	0.35933	0.00019499	-1.2275	-0.00066609	-0.86816	-0.0004711	542.9800784634334	25.503	0.32469	25.503	25.267	25.591	0					16	10	2	0	0	0	0.33352	1	4082	4082		0	0	1	88452	+		36068	19611	21233	21234	43610	43610					0.130033152907572
QRLQRRQLWWR	11	Unmodified	_QRLQRRQLWWR_					0	0	0			REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2234497070312	3	542.646442	1624.9175	0.26806	0.00014546	-1.1615	-0.0006303	-0.89348	-0.00048484	542.6460002867826	25.461	0.40171	25.405	25.219	25.62	-0.055931					27	13	3	0	0	0	0.33352	1	4087	4087		0	0	1	100790	+		36069	19611	21233	21234	43611	43611					0.130033152907572
QRLVDVVV	8	Unmodified	_QRLVDVVV_					0	0	0			REV__ENSG00000062725|ENST00000083182|APPBP2	REV__ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.2845458984375	2	464.284734	926.554916	0.10685	4.9609E-05	-0.068722	-3.1907E-05	0.038128	1.7702E-05	464.2845476209385	35.761	0.76274	35.761	35.52	36.282	0					59	27	4	0	0	0	0.39068	1	7166	7166		20.454	1.0146	1	1580000	+		36070	13635	21234	21235	43612	43612					0.08870064168468161
QRLVFWRKKW	10	Unmodified	_QRLVFWRKKW_					0	0	0			REV__nc|ENSG00000145555|Q9HD67-3|MYO10	REV__nc|ENSG00000145555|Q9HD67-3|MYO10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.27655029296875	3	482.954212	1445.84081	0.50031	0.00024163	-1.3262	-0.00064047	-0.82584	-0.00039884	482.9537935031785	58.689	0.33516	58.674	58.496	58.831	-0.014267					12	11	2	0	0	0	0.40943	1	14232	14232		1.7423	0	1	187860	+		36071	16295	21235	21236	43613	43613					0.13572123741573705
QRMRYIFP	8	Unmodified	_QRMRYIFP_					0	0	0			REV__nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	REV__nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7966918945312	2	555.797486	1109.58042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.88	1	116.88	116.38	117.38	0								0	0	0	0.37992	1	30244	30244		0.79363	0.10326	1		+		36072	13499	21236	21237	43614	43614					0.030012154192490925
QRMRYIFP	8	Unmodified	_QRMRYIFP_					0	0	0			REV__nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	REV__nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.79638671875	2	555.797486	1109.58042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.49	1	114.47	113.97	114.97	-0.019096								0	0	0	0.37992	1	29725	29725		0.79363	0.10326	1		+		36073	13499	21236	21237	43615	43615					0.030012154192490925
QRMRYIFP	8	Unmodified	_QRMRYIFP_					0	0	0			REV__nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	REV__nc|ENSG00000033030|Q6NZY4-2|ZCCHC8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7965698242188	2	555.797486	1109.58042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.84	1	118.87	118.37	119.37	0.026253								0	0	0	0.37992	1	30762	30762		0.79363	0.10326	1		+		36074	13499	21236	21237	43616	43616					0.030012154192490925
QRNLVLHLNA	10	Unmodified	_QRNLVLHLNA_					0	0	0			REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.34326171875	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.58	1	115.55	115.05	116.05	-0.020988								0	0	0	0.38166	1	29968	29968		1.4819	0.15237	1		+		36075	14615	21237	21238	43617	43617					0.09147016757151505
QRPDKTLLG	9	Unmodified	_QRPDKTLLG_					0	0	0			REV__nc|ENSG00000163482|Q9NRP7-2|STK36	REV__nc|ENSG00000163482|Q9NRP7-2|STK36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2987670898438	2	514.298373	1026.58219	0.45286	0.0002329	2.9478	0.001516	3.4007	0.001749	514.2986150353822	88.643	1.0258	88.643	88.302	89.328	0					89	48	3	0	0	0	0.25988	1	23428	23428		3.9444	0.66309	1	159540	+		36076	17056	21238	21239	43618	43618					0.0699654770885445
QRPDKTLLG	9	Unmodified	_QRPDKTLLG_					0	0	0			REV__nc|ENSG00000163482|Q9NRP7-2|STK36	REV__nc|ENSG00000163482|Q9NRP7-2|STK36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2989501953125	2	514.298373	1026.58219	0.34474	0.0001773	0.12332	6.3424E-05	0.46807	0.00024073	514.2983076232633	86.14	0.88934	86.224	85.836	86.725	0.084251					90	34	3	0	0	0	0.31417	1	22778	22778		6.7232	0.99131	1	1647900	+		36077	17056	21238	21239	43619	43619					0.0699654770885445
QRPDWVKV	8	Unmodified	_QRPDWVKV_					0	0	0			REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	REV__nc|ENSG00000243667|Q96MX6-2|DNAAF10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2987670898438	2	514.287808	1026.56106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.653	1	88.653	88.153	89.153	0								0	0	0	0.36623	1	23428	23428		7.2892	1.0834	1		+		36078	19194	21239	21240	43620	43620					0.048845823999727145
QRPIEEKRVK	10	Unmodified	_QRPIEEKRVK_					0	0	0			REV__ENSG00000065308|ENST00000182527|TRAM2	REV__ENSG00000065308|ENST00000182527|TRAM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.882080078125	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.641	1	96.635	96.135	97.135	-0.0055466								0	0	0	0.37739	1	25849	25849		3.2813	0	1		+		36079	13660	21240	21241	43621	43621					0.12211243991396259
QRPIEEKRVK	10	Unmodified	_QRPIEEKRVK_					0	0	0			REV__ENSG00000065308|ENST00000182527|TRAM2	REV__ENSG00000065308|ENST00000182527|TRAM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.859130859375	2	641.883136	1281.75172	0.42714	0.00027417	-1.1553	-0.00074155	-0.72813	-0.00046738	641.8820454392202	105.64	0.33974	105.65	105.49	105.83	0.0031738					58	47	2	0	0	0	0.32123	1	28037	28037		1.6526	0.32309	1	108810	+		36080	13660	21240	21241	43622	43622					0.12211243991396259
QRPLSLNIKAG	11	Unmodified	_QRPLSLNIKAG_					0	0	0		ENST00000402456.4_1_19:43414555-43422019:-|nuORF	ENST00000402456.4_1_19:43414555-43422019:-|nuORF	ENST00000402456.4_1_19:43414555-43422019:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3585205078125	2	598.859129	1195.70371	0.39275	0.0002352	0.38873	0.00023279	0.78148	0.000468	598.8593020239891	81.347	0.7814	81.323	80.904	81.685	-0.024048					61	34	2	0	0	0	0.33175	1	21062	21062		2.4985	0	1	469610			36081	10196	21241	21242	43623	43623					0.11368170071364148
QRPPTIVL	8	Unmodified	_QRPPTIVL_					0	0	0		nc|ENSG00000131263|Q9NVW2-2|RLIM;ENSG00000131263|ENST00000332687|RLIM	nc|ENSG00000131263|Q9NVW2-2|RLIM	nc|ENSG00000131263|Q9NVW2-2|RLIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.287353515625	2	462.287277	922.560001	0.13237	6.1193E-05	0.30007	0.00013872	0.43244	0.00019991	462.28736573555017	45.173	1.6753	45.173	44.493	46.168	0					149	60	4	0	0	0	0.017942	4	10082	10034;10082;10124;10173		104.8	31.006	1	7636600			36082	3552	21242	21243	43624;43625;43626;43627	43625					0.09562368031083679
QRPPTIVL	8	Unmodified	_QRPPTIVL_					0	0	0		nc|ENSG00000131263|Q9NVW2-2|RLIM;ENSG00000131263|ENST00000332687|RLIM	nc|ENSG00000131263|Q9NVW2-2|RLIM	nc|ENSG00000131263|Q9NVW2-2|RLIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.28741455078125	2	462.287277	922.560001	0.18342	8.4794E-05	0.075773	3.5029E-05	0.2592	0.00011982	462.28726745079905	45.072	1.285	45.14	44.739	46.024	0.068569					124	45	4	0	0	0	0.020228	4	10041	9997;10041;10090;10135		101.72	19.858	1	8960800			36083	3552	21242	21243	43628;43629;43630;43631	43629					0.09562368031083679
QRPPTIVL	8	Unmodified	_QRPPTIVL_					0	0	0		nc|ENSG00000131263|Q9NVW2-2|RLIM;ENSG00000131263|ENST00000332687|RLIM	nc|ENSG00000131263|Q9NVW2-2|RLIM	nc|ENSG00000131263|Q9NVW2-2|RLIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.287353515625	2	462.287277	922.560001	0.31315	0.00014476	-0.070932	-3.2791E-05	0.24222	0.00011197	462.2872048507117	45.057	1.3038	45.132	44.749	46.053	0.075047					127	47	4	0	0	0	0.029359	4	10017	9972;10017;10065;10108		89.427	24.409	1	8412100			36084	3552	21242	21243	43632;43633;43634;43635	43633					0.09562368031083679
QRQCTEVHLK	10	Unmodified	_QRQCTEVHLK_					0	0	0		ENSG00000123908|ENST00000220592|AGO2;nc|ENSG00000123908|Q9UKV8-2|AGO2	ENSG00000123908|ENST00000220592|AGO2	ENSG00000123908|ENST00000220592|AGO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.56292724609375	3	414.552156	1240.63464	0.091113	3.7771E-05	-0.40308	-0.0001671	-0.31196	-0.00012932	414.55208255118373	16.021	1.062	15.906	15.605	16.667	-0.11434					87	36	5	0	0	0	0.31994	1	1127	1127		5.4027	0.87384	1	474630			36085	3125	21243	21244	43636	43636					0.023947627801589988
QRQDEKEEM	9	Unmodified	_QRQDEKEEM_					0	0	0			REV__ENST00000440869.6_1_6:144033267-144033306:+|nuORF	REV__ENST00000440869.6_1_6:144033267-144033306:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.342041015625	2	596.766777	1191.519	0.47626	0.00028421	-1.548	-0.00092381	-1.0718	-0.00063959	597.2672720645234	67.912	0.5906	67.912	67.51	68.101	0					28	20	2	0	0	0	0.25843	1	16985	16985		5.7319	1.4026	1	168250	+		36086	21048	21244	21245	43637	43637					-0.06909805861369023
QRQDIAFAY	9	Unmodified	_QRQDIAFAY_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2803955078125	2	556.28018	1110.54581	0.6075	0.00033794	-0.23249	-0.00012933	0.37501	0.00020861	556.2799200444921	45.902	0.73549	45.902	45.64	46.375	0					45	26	2	0	0	0	0.0042343	1	10319	10319		92.491	36.989	1	2684900			36087	7313	21245	21246	43638	43638					-0.00504329187856456
QRQDIAFAY	9	Unmodified	_QRQDIAFAY_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2802734375	2	556.28018	1110.54581	0.40191	0.00022357	0.10505	5.844E-05	0.50696	0.00028201	556.2800410799734	45.612	0.81883	45.671	45.361	46.18	0.059834					77	28	4	0	0	0	0.00094673	1	10220	10220		123.45	50.483	1	2872200			36088	7313	21245	21246	43639	43639					-0.00504329187856456
QRQDIAFAY	9	Unmodified	_QRQDIAFAY_					0	0	0		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2802734375	2	556.28018	1110.54581	0.42861	0.00023843	0.089035	4.9529E-05	0.51765	0.00028796	556.2800267145226	45.613	0.84364	45.678	45.33	46.174	0.065048					85	30	4	0	0	0	0.0015545	2	10221	10173;10221		115.69	51.732	1	2541900			36089	7313	21245	21246	43640;43641	43641					-0.00504329187856456
QRQEQQLKWT	10	Unmodified	_QRQEQQLKWT_					0	0	0			REV__nc|ENSG00000141052|Q8IZQ8-2|MYOCD	REV__nc|ENSG00000141052|Q8IZQ8-2|MYOCD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.259765625	3	448.905476	1343.6946	0.24986	0.00011217	-1.6182	-0.0007264	-1.3683	-0.00061424	449.23802503906734	79.541	0.15351	79.602	79.516	79.669	0.061417					8	5	2	0	0	0	0.32116	1	20627	20627		2.6312	0	1	43904	+		36090	16064	21246	21247	43642	43642					0.036497767150194704
QRQKIAYL	8	Unmodified	_QRQKIAYL_					0	0	0		ENSG00000211448|ENST00000438257|DIO2;nc|ENSG00000211448|Q92813-2|DIO2;ENST00000422005.7_2_14:80669058-80669397:-|nuORF	ENSG00000211448|ENST00000438257|DIO2	ENSG00000211448|ENST00000438257|DIO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.27789306640625	2	510.303458	1018.59236	0.11995	6.1212E-05	-0.097344	-4.9675E-05	0.022608	1.1537E-05	510.30308760832816	19.226	0.75963	19.226	18.895	19.655	0					41	26	2	0	0	0	0.34353	1	2230	2230		4.756	0.81161	1	63900			36091	8326	21247	21248	43643	43643					0.08381155434085485
QRQKIAYL	8	Unmodified	_QRQKIAYL_					0	0	0		ENSG00000211448|ENST00000438257|DIO2;nc|ENSG00000211448|Q92813-2|DIO2;ENST00000422005.7_2_14:80669058-80669397:-|nuORF	ENSG00000211448|ENST00000438257|DIO2	ENSG00000211448|ENST00000438257|DIO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.27825927734375	2	510.303458	1018.59236	0.20729	0.00010578	-0.055927	-2.854E-05	0.15136	7.7242E-05	510.30306866047334	19.436	0.74466	19.38	19.017	19.762	-0.055693					40	25	2	0	0	0	0.34353	1	2262	2262		2.0598	0	1	71561			36092	8326	21247	21248	43644	43644					0.08381155434085485
QRQPRAKALMF	11	Unmodified	_QRQPRAKALMF_					0	0	0		ENST00000473782.1_1_22:26878136-26879745:-|nuORF;ENST00000479064.5_1_22:26878136-26879789:-|nuORF	ENST00000473782.1_1_22:26878136-26879745:-|nuORF	ENST00000473782.1_1_22:26878136-26879745:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7532653808594	3	449.255563	1344.74486	0.35121	0.00015778	-0.26883	-0.00012077	0.082383	3.7011E-05	449.25479433675827	51.007	0.66223	51.054	50.713	51.375	0.046574					64	24	4	0	0	0	0.3322	1	11872	11872		4.7159	1.3963	1	764070			36093	10912	21248	21249	43645	43645					0.08627607839184748
QRQQHRRPRRR	11	Unmodified	_QRQQHRRPRRR_					0	0	0			REV__ENST00000296564.8_2_5:5422898-5422991:+|nuORF	REV__ENST00000296564.8_2_5:5422898-5422991:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2689819335938	3	525.308823	1572.90464	0.35789	0.00018801	-1.7139	-0.00090034	-1.356	-0.00071234	525.3074320905661	94.332	0.12872	94.332	94.247	94.376	0					14	10	2	0	0	0	0.33351	1	25152	25152		0.094841	0	1	68675	+		36094	19796	21249	21250	43646	43646					0.1411029695123034
QRQQHRRPRRR	11	Unmodified	_QRQQHRRPRRR_					0	0	0			REV__ENST00000296564.8_2_5:5422898-5422991:+|nuORF	REV__ENST00000296564.8_2_5:5422898-5422991:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	525.308823	1572.90464	0.39636	0.00020821	1.4626	0.00076834	1.859	0.00097655	525.3094306047644	94.391	0.17437	94.474	94.382	94.556	0.082779	0.070839	0.00052496	NaN	0.094841	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117410	+		36095	19796	21249	21250							0.1411029695123034
QRQRHVRLHQK	11	Unmodified	_QRQRHVRLHQK_					0	0	0			REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.958984375	3	495.958908	1484.85489	0.3017	0.00014963	-0.13055	-6.4746E-05	0.17116	8.4886E-05	495.95879638391847	93.351	1.4786	93.351	92.57	94.048	0					465	121	4	0	0	0	0.48173	3	24651	24651;24882;24995		0.50596	0.50596	1	2291900	+		36096	17480	21250	21251	43647;43648;43649	43647					0.13186169222581157
QRQRHVRLHQK	11	Unmodified	_QRQRHVRLHQK_					0	0	0			REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	REV__nc|ENSG00000168813|Q8TCN5-2|ZNF507	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.959228515625	3	495.958908	1484.85489	0.43562	0.00021605	0.048996	2.43E-05	0.48462	0.00024035	495.9589037802029	94.926	2.7566	94.924	94.016	96.772	-0.0020142					920	253	5	0	0	0	0.47545	8	25282	25282;25323;25470;25505;25540;25577;25613;25651		1.3296	1.3296	1	5553400	+		36097	17480	21250	21251	43650;43651;43652;43653;43654;43655;43656;43657	43650					0.13186169222581157
QRQVRENK	8	Unmodified	_QRQVRENK_					0	0	0			REV__ENSG00000092820|ENST00000367075|EZR	REV__ENSG00000092820|ENST00000367075|EZR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2855834960938	2	529.296696	1056.57884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.651	1	34.651	34.151	35.151	0								0	0	0	0.35843	1	6855	6855		10.824	1.4408	1		+		36098	14085	21251	21252	43658	43658					0.052812976548466395
QRREFREKRLR	11	Unmodified	_QRREFREKRLR_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3099975585938	3	525.309718	1572.90732	0.55958	0.00029395	-0.082352	-4.326E-05	0.47723	0.00025069	525.3096041725858	95.918	1.503	95.914	95.267	96.77	-0.0038147					424	147	4	0	0	0	0.47633	1	25550	25550		1.2148	0.80657	1	996780			36099	1926	21252	21253	43659	43659					0.14378707565538207
QRREFREKRLR	11	Unmodified	_QRREFREKRLR_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.31005859375	3	525.309718	1572.90732	0.5161	0.00027111	0.23407	0.00012296	0.75017	0.00039407	525.3096391676545	97.374	1.0388	97.368	96.683	97.722	-0.0055466					399	106	5	0	0	0	0.46554	2	26138	26069;26138		2.6312	1.4164	1	2384700			36100	1926	21252	21253	43660;43661	43661					0.14378707565538207
QRRGAPAL	8	Unmodified	_QRRGAPAL_					0	0	0		ENSG00000164916|ENST00000328914|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.759033203125	2	434.759218	867.503883	0.17914	7.7884E-05	-0.23046	-0.0001002	-0.051319	-2.2311E-05	434.7591710897336	74.772	0.94781	74.74	74.443	75.391	-0.031487					58	34	3	0	0	0	0.45015	1	19143	19143		5.7604	0	1	798280			36101	5897	21253	21254	43662	43662					0.06483159914284897
QRRGAPAL	8	Unmodified	_QRRGAPAL_					0	0	0		ENSG00000164916|ENST00000328914|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	434.759218	867.503883	0.24332	0.00010578	-0.40724	-0.00017705	-0.16392	-7.1266E-05	434.7591330073909	74.733	0.94012	74.733	74.481	75.421	0	0.0016341	-0.00012558	NaN	5.7604	51	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	768510			36102	5897	21253	21254							0.06483159914284897
QRRGAPAL	8	Unmodified	_QRRGAPAL_					0	0	0		ENSG00000164916|ENST00000328914|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	ENSG00000164916|ENST00000328914|FOXK1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	434.759218	867.503883	-0.011006	-4.785E-06	-0.1373	-5.9691E-05	-0.1483	-6.4476E-05	434.7592327025516	74.669	0.86397	74.721	74.459	75.323	0.052361	-0.010282	0.00010914	NaN	5.7604	59	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	713810			36103	5897	21253	21254							0.06483159914284897
QRRGRLGVF	9	Unmodified	_QRRGRLGVF_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.8246459960938	2	544.825424	1087.63629	0.61877	0.00033712	-0.77593	-0.00042275	-0.15716	-8.5624E-05	544.8246270997366	88.086	1.0894	88.086	87.794	88.883	0					136	53	3	0	0	0	0.27532	1	23231	23231		12.532	12.532	1	1184100	+		36104	13399	21254	21255	43663	43663					0.09598184651076735
QRRGRLGVF	9	Unmodified	_QRRGRLGVF_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.8248291015625	2	544.825424	1087.63629	0.66373	0.00036161	-0.7747	-0.00042208	-0.11097	-6.0462E-05	544.8246293733314	88.082	1.0041	88.171	87.766	88.77	0.089195					130	49	4	0	0	0	0.27532	1	23191	23191		12.532	4.6214	1	1029500	+		36105	13399	21254	21255	43664	43664					0.09598184651076735
QRRGRLGVF	9	Unmodified	_QRRGRLGVF_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.8251953125	2	544.825424	1087.63629	0.66373	0.00036161	-0.7747	-0.00042208	-0.11097	-6.0462E-05	544.8246293733314	88.082	1.0041	88.171	87.766	88.77	0.089195					130	49	4	0	0	0	0.22596	1	23315	23315		21.747	12.399	1	1029500	+		36106	13399	21254	21255	43665	43665					0.09598184651076735
QRRGRLGVF	9	Unmodified	_QRRGRLGVF_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.824951171875	2	544.825424	1087.63629	0.68227	0.00037172	-0.73753	-0.00040183	-0.055266	-3.011E-05	544.8246054056643	88.175	0.99753	88.172	87.852	88.849	-0.0028458					124	47	3	0	0	0	0.24581	2	23253	23253;23295		16.942	16.942	1	1048300	+		36107	13399	21254	21255	43666;43667	43666					0.09598184651076735
QRRHRNSTT	9	Unmodified	_QRRHRNSTT_					0	0	0			REV__ENST00000556356.1_1_12:57598740-57602363:+|nuORF	REV__ENST00000556356.1_1_12:57598740-57602363:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3096923828125	2	578.308126	1154.6017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.87	1	103.87	103.37	104.37	0								0	0	0	0.2489	1	27585	27585		6.7232	0	1		+		36108	15189	21255	21256	43668	43668					0.03058316772330727
QRRHRNSTT	9	Unmodified	_QRRHRNSTT_					0	0	0			REV__ENST00000556356.1_1_12:57598740-57602363:+|nuORF	REV__ENST00000556356.1_1_12:57598740-57602363:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.30712890625	2	578.308126	1154.6017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.94	1	103.94	103.44	104.44	0								0	0	0	0.25197	1	27600	27600		5.7319	0	1		+		36109	15189	21255	21256	43669	43669					0.03058316772330727
QRRLKPPLFG	10	Unmodified	_QRRLKPPLFG_					0	0	0			REV__ENSG00000179715|ENST00000546455|PCED1B	REV__ENSG00000179715|ENST00000546455|PCED1B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.369873046875	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.51	1	118.51	118.01	119.01	0								0	0	0	0.38202	1	30609	30609		0.40072	0	1		+		36110	18090	21256	21257	43670	43670					0.132924840334681
QRRPHWLTRRK	11	Unmodified	_QRRPHWLTRRK_					0	0	0		ENST00000264449.14_2_4:42629066-42658940:-|nuORF	ENST00000264449.14_2_4:42629066-42658940:-|nuORF	ENST00000264449.14_2_4:42629066-42658940:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2708740234375	3	511.971037	1532.89128	0.26177	0.00013402	1.2833	0.000657	1.545	0.00079102	511.97148630920634	96.632	0.24321	96.627	96.534	96.777	-0.0055466					38	23	2	0	0	0	0.33347	1	25890	25890		0.45452	0.31463	1	155820			36111	9025	21257	21258	43671	43671					0.1461504611925193
QRRPHWLTRRK	11	Unmodified	_QRRPHWLTRRK_					0	0	0		ENST00000264449.14_2_4:42629066-42658940:-|nuORF	ENST00000264449.14_2_4:42629066-42658940:-|nuORF	ENST00000264449.14_2_4:42629066-42658940:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	511.971037	1532.89128	0.02613	1.3378E-05	1.713	0.00087698	1.7391	0.00089036	512.3063363745182	96.945	0.66486	96.945	96.722	97.387	0	0.15894	0.00014914	NaN	0.45452	84	63	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103710			36112	9025	21257	21258							0.1461504611925193
QRRQQKIQGK	10	Unmodified	_QRRQQKIQGK_					0	0	0		nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16	nc|ENSG00000156256|Q9Y5T5-4|USP16	nc|ENSG00000156256|Q9Y5T5-4|USP16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.8756713867188	2	635.378552	1268.74255	0.30693	0.00019501	-0.44019	-0.00027968	-0.13326	-8.467E-05	635.3782898641571	18.863	0.58971	18.746	18.414	19.004	-0.11739					34	20	2	0	0	0	0.32167	1	1982	1982		0.40072	0	1	55160			36113	5227	21258	21259	43672	43672					0.1189289542573988
QRRRLPFL	8	Unmodified	_QRRRLPFL_					0	0	0			REV__ENST00000409870.1_1_2:191045212-191045605:+|nuORF	REV__ENST00000409870.1_1_2:191045212-191045605:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7556762695312	2	543.338167	1084.66178	0.55061	0.00029917	2.3472	0.0012753	2.8978	0.0015745	543.3391389802925	71.168	0.41761	71.228	71.017	71.434	0.060783					21	14	2	0	0	0	0.31934	1	18123	18123		24.674	2.9272	1	422620	+		36114	20769	21259	21260	43673	43673					0.12283659173499473
QRRRLPFL	8	Unmodified	_QRRRLPFL_					0	0	0			REV__ENST00000409870.1_1_2:191045212-191045605:+|nuORF	REV__ENST00000409870.1_1_2:191045212-191045605:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	543.338167	1084.66178	0.50614	0.00027501	2.4277	0.0013191	2.9339	0.0015941	543.3392458680493	71.154	0.46791	71.154	70.963	71.431	0	-0.045085	2.2382E-05	NaN	24.674	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349660	+		36115	20769	21259	21260							0.12283659173499473
QRRRLPFL	8	Unmodified	_QRRRLPFL_					0	0	0			REV__ENST00000409870.1_1_2:191045212-191045605:+|nuORF	REV__ENST00000409870.1_1_2:191045212-191045605:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.338167	1084.66178	0.68036	0.00036967	2.4185	0.0013141	3.0989	0.0016837	543.8412028921649	71.239	0.5732	71.214	70.881	71.454	-0.024872	0.015487	1.2371E-05	NaN	24.674	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	404940	+		36116	20769	21259	21260							0.12283659173499473
QRRRRRRKIEI	11	Unmodified	_QRRRRRRKIEI_					0	0	0		ENSG00000171316|ENST00000423902|CHD7	ENSG00000171316|ENST00000423902|CHD7	ENSG00000171316|ENST00000423902|CHD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.001220703125	3	523.001107	1565.98149	0.21005	0.00010986	0.34745	0.00018172	0.5575	0.00029157	523.0011682146591	105.49	0.3772	105.49	105.2	105.58	-0.0027847					149	53	3	0	0	0	0.48502	2	27930	27930;27960		0.073264	0	1	1329200			36117	6536	21260	21261	43674;43675	43674					0.22114095447727777
QRRRTVRLITD	11	Unmodified	_QRRRTVRLITD_					0	0	0			REV__ENSG00000067334|ENST00000436063|DNTTIP2	REV__ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.95196533203125	3	471.951419	1412.83243	0.22557	0.00010646	0.92884	0.00043837	1.1544	0.00054483	471.95181525904115	97.569	0.8069	97.562	97.22	98.027	-0.0068207					251	85	5	0	0	0	0.46842	1	26132	26132		2.2527	0	1	838030	+		36118	13690	21261	21262	43676	43676					0.14252525034316932
QRRSAKIA	8	Unmodified	_QRRSAKIA_					0	0	0		ENST00000505973.1_1_2:27821100-27852768:+|nuORF;nc|ENSG00000243943|Q96ME7-2|ZNF512;nc|ENSG00000243943|Q96ME7-3|ZNF512;ENSG00000243943|ENST00000355467|ZNF512	ENST00000505973.1_1_2:27821100-27852768:+|nuORF	ENST00000505973.1_1_2:27821100-27852768:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2854309082031	2	465.2856	928.556647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.048	1	85.048	84.548	85.548	0								0	0	0	0.37664	1	22322	22322		2.5775	0	1				36119	8562	21262	21263	43677	43677					0.08951117977073864
QRSTAIFFY	9	Unmodified	_QRSTAIFFY_					0	0	0		IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.3193969726562	2	566.792924	1131.57129	0.3834	0.00021731	-0.57105	-0.00032367	-0.18765	-0.00010636	566.7928297065142	57.138	0.35263	57.216	56.983	57.336	0.078674					17	12	2	0	0	0	0.23235	1	13795	13795		21.537	4.4241	1	241900			36120	7927	21263	21264	43678	43678					0.010771453345796544
QRSTAIFFY	9	Unmodified	_QRSTAIFFY_					0	0	0		IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.3191528320312	2	566.792924	1131.57129	0.11207	6.3521E-05	0.9148	0.0005185	1.0269	0.00058202	566.7929741598576	57.363	0.32608	57.346	57.197	57.523	-0.0172					12	11	2	0	0	0	0.20167	1	13862	13862		29.082	4.4077	1	171890			36121	7927	21263	21264	43679	43679					0.010771453345796544
QRSTAIFFY	9	Unmodified	_QRSTAIFFY_					0	0	0		IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	566.792924	1131.57129	0.40701	0.00023069	-0.023336	-1.3227E-05	0.38368	0.00021747	566.7930369818955	57.233	0.31194	57.233	57.038	57.35	0	-0.032552	-0.0002773	NaN	29.082	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269200			36122	7927	21263	21264							0.010771453345796544
QRSVDVIVSS	10	Unmodified	_QRSVDVIVSS_					0	0	0		nc|ENSG00000006576|Q8N3S3-4|PHTF2;nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-2|PHTF2;ENSG00000006576|ENST00000416283|PHTF2	nc|ENSG00000006576|Q8N3S3-4|PHTF2	nc|ENSG00000006576|Q8N3S3-4|PHTF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.8541259765625	2	545.29857	1088.58259	0.10877	5.931E-05	1.25	0.0006816	1.3587	0.00074091	545.2992562200691	12.183	0.31389	12.183	12.119	12.433	0					20	11	3	0	0	0	0.31794	1	124	124		8.1555	1.4324	1	107530			36123	362	21264	21265	43680	43680					0.04183922638048898
QRTEQIILN	9	Unmodified	_QRTEQIILN_					0	0	0			REV__nc|ENSG00000065328|Q7L590|MCM10	REV__nc|ENSG00000065328|Q7L590|MCM10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7894287109375	2	557.814387	1113.61422	0.70332	0.00039232	1.6128	0.00089962	2.3161	0.0012919	557.8150763504229	48.408	0.26616	48.456	48.366	48.632	0.04752					12	9	2	0	0	0	0.24848	1	11087	11087		13.906	0.86358	1	138100	+		36124	13662	21265	21266	43681	43681					0.06195915392027018
QRTVITEEFK	10	Unmodified	_QRTVITEEFK_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3;nc|ENSG00000107164|Q96I24-2|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.5752258300781	3	417.562827	1249.66665	-0.033569	-1.4017E-05	0.93508	0.00039046	0.90151	0.00037644	417.5631464391842	16.227	0.4409	16.112	15.921	16.362	-0.11434					26	14	4	0	0	0	0.37823	1	1239	1239		7.4771	0.84669	1	30700			36125	2113	21266	21267	43682	43682					0.051804537349198654
QRVDYIMQL	9	Oxidation (M)	_QRVDYIM(Oxidation (M))QL_		QRVDYIM(1)QL		QRVDYIM(74)QL	0	0	1		nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000541969.1_1_12:6969646-6972391:+|nuORF;ENST00000537267.5_1_12:6966716-6975238:+|nuORF	nc|ENSG00000111667|P45974-2|USP5	nc|ENSG00000111667|P45974-2|USP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.302734375	2	591.302798	1180.59104	0.44919	0.00026561	0.83481	0.00049362	1.284	0.00075923	591.3030384474326	47.408	0.6381	47.46	47.062	47.7	0.052574					54	23	3	0	0	0	0.013404	1	10696	10696		74.2	26.451	1	783560			36126	2378	21267	21268	43683	43683		292			0.007971532830197248
QRVERLGSL	9	Unmodified	_QRVERLGSL_					0	0	0		ENSG00000182173|ENST00000333213|TSEN54;nc|ENSG00000182173|Q7Z6J9-2|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.309326171875	2	529.309272	1056.60399	0.43526	0.00023039	-0.32686	-0.00017301	0.10839	5.7374E-05	529.309084974058	23.158	0.68252	23.113	22.873	23.556	-0.044867					55	24	3	0	0	0	0.22188	1	3346	3346		20.454	0	1	389270			36127	7275	21268	21269	43684	43684					0.07795352457424087
QRWKQGTL	8	Unmodified	_QRWKQGTL_					0	0	0			REV__ENSG00000125966|ENST00000246186|MMP24	REV__ENSG00000125966|ENST00000246186|MMP24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8026428222656	2	508.785433	1015.55631	-0.090429	-4.6009E-05	1.09	0.00055459	0.99959	0.00050858	508.78592915002633	28.099	0.35899	28.099	27.992	28.351	0.00046921					17	12	2	0	0	0	0.37937	1	4867	4867		21.747	0	1	117920	+		36128	15294	21269	21270	43685	43685					0.04915698257229906
QRYFSMERQF	10	Unmodified	_QRYFSMERQF_					0	0	0			REV__ENSG00000117395|ENST00000236051|EBNA1BP2	REV__ENSG00000117395|ENST00000236051|EBNA1BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.55572509765625	3	464.555678	1390.6452	0.069874	3.2461E-05	0.24937	0.00011585	0.31925	0.00014831	464.5557974688896	62.035	0.68176	62.027	61.784	62.465	-0.0085564					99	24	6	0	0	0	0.38952	1	15300	15300		5.4027	0.35519	1	1838700	+		36129	14965	21270	21271	43686	43686					-0.034492545654302376
QRYKRLSP	8	Unmodified	_QRYKRLSP_					0	0	0			REV__ENST00000240316.4_1_17:55027977-55028133:-|nuORF	REV__ENST00000240316.4_1_17:55027977-55028133:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.7899780273438	2	524.306532	1046.59851	0.32147	0.00016855	0.21916	0.00011491	0.54064	0.00028346	524.3063134220081	23.546	0.42577	23.546	23.308	23.734	0					24	14	2	0	0	0	0.34218	1	3513	3513		9.3474	1.4373	1	54190	+		36130	19491	21271	21272	43687	43687					0.07707673665595394
QRYWARNF	8	Unmodified	_QRYWARNF_					0	0	0		ENSG00000089163|ENST00000202967|SIRT4	ENSG00000089163|ENST00000202967|SIRT4	ENSG00000089163|ENST00000202967|SIRT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3141479492188	2	570.788507	1139.56246	0.51513	0.00029403	-1.6213	-0.00092544	-1.1062	-0.00063142	570.7878483260939	65.847	0.43362	65.847	65.634	66.068	0					21	15	2	0	0	0	0.32435	1	16464	16464		16.942	4.7016	1	186820			36131	1351	21272	21273	43688	43688					-0.0017378351126353664
QRYWARNF	8	Unmodified	_QRYWARNF_					0	0	0		ENSG00000089163|ENST00000202967|SIRT4	ENSG00000089163|ENST00000202967|SIRT4	ENSG00000089163|ENST00000202967|SIRT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.314208984375	2	570.788507	1139.56246	0.43555	0.00024861	-1.6757	-0.00095646	-1.2401	-0.00070786	571.2887253628526	65.675	0.34662	65.764	65.547	65.893	0.088882					19	12	2	0	0	0	0.32435	1	16411	16411		16.942	4.7016	1	174010			36132	1351	21272	21273	43689	43689					-0.0017378351126353664
QSAIHFVETT	10	Unmodified	_QSAIHFVETT_					0	0	0			REV__ENSG00000102794|ENST00000377462|ACOD1	REV__ENSG00000102794|ENST00000377462|ACOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.78369140625	2	566.785296	1131.55604	-0.097129	-5.5051E-05	-3.5109	-0.0019899	-3.608	-0.002045	566.7837631582436	12.294	0.50496	12.294	12.194	12.699	0					33	16	5	0	0	0	0.24105	1	84	84		27.629	15.388	1	212560	+		36133	14334	21273	21274	43690	43690					-0.004477662532735849
QSAIHFVETT	10	Unmodified	_QSAIHFVETT_					0	0	0			REV__ENSG00000102794|ENST00000377462|ACOD1	REV__ENSG00000102794|ENST00000377462|ACOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.7837524414062	2	566.785296	1131.55604	0.10086	5.7169E-05	-3.6983	-0.0020962	-3.5975	-0.002039	566.7835330155042	12.293	0.5522	12.196	12	12.552	-0.096607					32	20	3	0	0	0	0.33104	1	86	86		16.149	5.3496	1	194600	+		36134	14334	21273	21274	43691	43691					-0.004477662532735849
QSAIHFVETT	10	Unmodified	_QSAIHFVETT_					0	0	0			REV__ENSG00000102794|ENST00000377462|ACOD1	REV__ENSG00000102794|ENST00000377462|ACOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.7837524414062	2	566.785296	1131.55604	-0.18174	-0.00010301	-3.227	-0.001829	-3.4087	-0.001932	566.7838091366217	12.312	0.4398	12.243	12.051	12.491	-0.06806					35	16	4	0	0	0	0.26265	1	89	89		24.991	1.2012	1	198220	+		36135	14334	21273	21274	43692	43692					-0.004477662532735849
QSAIHFVETT	10	Unmodified	_QSAIHFVETT_					0	0	0			REV__ENSG00000102794|ENST00000377462|ACOD1	REV__ENSG00000102794|ENST00000377462|ACOD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	566.785296	1131.55604	-0.097129	-5.5051E-05	-3.5109	-0.0019899	-3.608	-0.002045	566.7837631582436	12.294	0.50496	12.294	12.194	12.699	0	0.049361	-1.2055E-05	NaN	27.629	33	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212560	+		36136	14334	21273	21274							-0.004477662532735849
QSAIHFVETT	10	Unmodified	_QSAIHFVETT_					0	0	0			REV__ENSG00000102794|ENST00000377462|ACOD1	REV__ENSG00000102794|ENST00000377462|ACOD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	566.785296	1131.55604	0.10086	5.7169E-05	-3.6983	-0.0020962	-3.5975	-0.002039	566.7835330155042	12.293	0.5522	12.196	12	12.552	-0.096607	-0.048449	-0.00022452	NaN	27.629	32	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194600	+		36137	14334	21273	21274							-0.004477662532735849
QSAIHFVETT	10	Unmodified	_QSAIHFVETT_					0	0	0			REV__ENSG00000102794|ENST00000377462|ACOD1	REV__ENSG00000102794|ENST00000377462|ACOD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	566.785296	1131.55604	-0.18174	-0.00010301	-3.227	-0.001829	-3.4087	-0.001932	566.7838091366217	12.312	0.4398	12.243	12.051	12.491	-0.06806	-0.00091149	0.00030976	NaN	27.629	35	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198220	+		36138	14334	21273	21274							-0.004477662532735849
QSALQEILGK	10	Unmodified	_QSALQEILGK_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8264770507812	2	543.811313	1085.60807	0.30186	0.00016416	1.7201	0.0009354	2.0219	0.0010996	544.3139788718529	12.287	0.68453	12.19	11.929	12.614	-0.096607					32	25	2	0	0	0	0.41168	1	12	12		1.3295	0	1	253420			36139	7415	21274	21275	43693	43693					0.06869397160471635
QSAQHALRL	9	Unmodified	_QSAQHALRL_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7987670898438	2	512.28834	1022.56213	0.27616	0.00014147	-0.53933	-0.00027629	-0.26318	-0.00013482	512.2880400348427	24.509	0.65244	24.509	24.22	24.872	0					30	21	2	0	0	0	0.2719	1	3804	3804		13.042	3.6593	1	71627			36140	3421	21275	21276	43694	43694					0.051747967688811514
QSAQHALRL	9	Unmodified	_QSAQHALRL_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7986450195312	2	512.28834	1022.56213	0.21807	0.00011171	-0.28342	-0.00014519	-0.065347	-3.3476E-05	512.2882364811709	24.664	0.54214	24.608	24.43	24.972	-0.055931					26	18	2	0	0	0	0.25323	1	3811	3811		10.074	2.1638	1	115950			36141	3421	21275	21276	43695	43695					0.051747967688811514
QSAQHALRL	9	Unmodified	_QSAQHALRL_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7984008789062	2	512.28834	1022.56213	0.0016153	8.2749E-07	-0.34611	-0.00017731	-0.34449	-0.00017648	512.2881740727838	24.612	0.37711	24.58	24.456	24.833	-0.031408					22	12	2	0	0	0	0.26612	1	3809	3809		13.906	5.3128	1	87241			36142	3421	21275	21276	43696	43696					0.051747967688811514
QSARLLGWG	9	Unmodified	_QSARLLGWG_					0	0	0		ENSG00000178404|ENST00000322630|CEP295NL	ENSG00000178404|ENST00000322630|CEP295NL	ENSG00000178404|ENST00000322630|CEP295NL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7562255859375	2	494.272158	986.529764	0.42885	0.00021197	-0.21478	-0.00010616	0.21407	0.00010581	494.27192792025954	19.735	0.56623	19.679	19.337	19.904	-0.055693					31	19	2	0	0	0	0.25779	1	2381	2381		6.2058	0.47393	1	36311			36143	7054	21276	21277	43697	43697					0.03596009365901409
QSARLLGWG	9	Unmodified	_QSARLLGWG_					0	0	0		ENSG00000178404|ENST00000322630|CEP295NL	ENSG00000178404|ENST00000322630|CEP295NL	ENSG00000178404|ENST00000322630|CEP295NL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	494.272158	986.529764	0.27156	0.00013423	0.10037	4.961E-05	0.37193	0.00018384	494.2720977930548	19.726	0.49854	19.726	19.35	19.849	0	0.044424	0.00010267	NaN	6.2058	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34135			36144	7054	21276	21277							0.03596009365901409
QSAWRGYDAR	10	Unmodified	_QSAWRGYDAR_					0	0	0		nc|ENSG00000071909|Q8WXR4-7|MYO3B;nc|ENSG00000071909|Q8WXR4-6|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;nc|ENSG00000071909|Q8WXR4-5|MYO3B;nc|ENSG00000071909|Q8WXR4-2|MYO3B;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;ENSG00000071909|ENST00000408978|MYO3B	nc|ENSG00000071909|Q8WXR4-7|MYO3B	nc|ENSG00000071909|Q8WXR4-7|MYO3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.7395324707031	3	403.863499	1208.56867	0.020758	8.3832E-06	-0.54034	-0.00021822	-0.51958	-0.00020984	404.19906505752976	75.478	0.5827	75.447	75.135	75.718	-0.031487					25	21	2	0	0	0	0.31942	1	19423	19423		6.1918	2.0023	1	117510			36145	12584	21277	21278	43698	43698					-0.02727310070395106
QSCSLLVRL	9	Unmodified	_QSCSLLVRL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.26409912109375	2	509.789327	1017.5641	0.27402	0.00013969	-1.2063	-0.00061498	-0.93233	-0.00047529	509.7885247377718	21.499	0.53785	21.45	21.179	21.717	-0.049377					36	18	3	0	0	0	0.25202	1	2858	2858		10.824	0	1	121950			36146	2416	21278	21279	43699	43699					0.05602089462513504
QSDRCLAF	8	Unmodified	_QSDRCLAF_					0	0	0		ENST00000261497.8_1_17:20905954-20906125:-|nuORF	ENST00000261497.8_1_17:20905954-20906125:-|nuORF	ENST00000261497.8_1_17:20905954-20906125:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.7608947753906	2	470.221277	938.428001	0.288	0.00013542	-0.32482	-0.00015274	-0.036823	-1.7315E-05	470.22122992701765	65.763	0.5414	65.852	65.547	66.088	0.088882					47	19	3	0	0	0	0.34297	1	16439	16439		6.3541	0	1	328480			36147	8967	21279	21280	43700	43700					-0.043676050481849416
QSDSRCKDY	9	Unmodified	_QSDSRCKDY_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.7838745117188	2	551.235113	1100.45567	0.18233	0.00010051	-1.6353	-0.00090142	-1.4529	-0.00080091	551.2341294748575	52.173	0.61789	52.172	51.793	52.411	-0.00080872					37	22	2	0	0	0	0.25323	1	12206	12206		10.074	5.3179	1	343680			36148	1147	21280	21281	43701	43701					-0.09053746578592836
QSELLRELE	9	Unmodified	_QSELLRELE_					0	0	0		ENSG00000144596|ENST00000621039|GRIP2	ENSG00000144596|ENST00000621039|GRIP2	ENSG00000144596|ENST00000621039|GRIP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3294677734375	2	558.798403	1115.58225	0.29122	0.00016273	-0.44887	-0.00025083	-0.15765	-8.8096E-05	558.7979537244022	32.236	0.62294	32.29	31.903	32.526	0.054371					24	21	2	0	0	0	0.26099	1	6112	6112		2.9952	0	1	120390			36149	4598	21281	21282	43702	43702					0.029085029181715072
QSFDKEWVAK	10	Unmodified	_QSFDKEWVAK_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.211669921875	3	413.211906	1236.61389	-0.33767	-0.00013953	-0.02774	-1.1462E-05	-0.36541	-0.00015099	413.2119176520353	34.254	0.62245	34.254	34.023	34.646	0					59	21	4	0	0	0	0.31516	1	6749	6749		11.065	11.065	1	479420			36150	11999	21282	21283	43703	43703					0.005044956721349081
QSFDKEWVAK	10	Unmodified	_QSFDKEWVAK_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2117919921875	3	413.211906	1236.61389	0.097433	4.026E-05	-0.20451	-8.4506E-05	-0.10708	-4.4246E-05	413.21177710110254	34.165	0.74884	34.231	33.955	34.704	0.06636					54	26	3	0	0	0	0.2613	1	6697	6697		25.155	14.84	1	459050			36151	11999	21282	21283	43704	43704					0.005044956721349081
QSFDKEWVAK	10	Unmodified	_QSFDKEWVAK_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.21185302734375	3	413.211906	1236.61389	0.052441	2.1669E-05	-0.12998	-5.3708E-05	-0.077537	-3.2039E-05	413.21181373964487	34.1	0.72536	34.167	33.939	34.664	0.0667					54	25	3	0	0	0	0.15159	1	6688	6688		38.559	19.838	1	530480			36152	11999	21282	21283	43705	43705					0.005044956721349081
QSFLVDKRV	9	Unmodified	_QSFLVDKRV_					0	0	0			REV__ENSG00000119042|ENST00000417098|SATB2	REV__ENSG00000119042|ENST00000417098|SATB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7661743164062	2	546.314023	1090.61349	0.72584	0.00039654	-0.69638	-0.00038044	0.029467	1.6098E-05	546.313532401769	26.8	0.38779	26.789	26.541	26.928	-0.01156					21	13	2	0	0	0	0.26031	1	4394	4394		3.5965	1.7523	1	88559	+		36153	15027	21283	21284	43706	43706					0.07181120742939129
QSGMRRKR	8	Unmodified	_QSGMRRKR_					0	0	0			REV__ENST00000600534.1_1_19:59085324-59085477:+|nuORF	REV__ENST00000600534.1_1_19:59085324-59085477:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2640380859375	2	509.787984	1017.56142	0.36319	0.00018515	1.1334	0.00057778	1.4966	0.00076293	509.7885062223751	21.465	0.45222	21.465	21.228	21.68	0					27	15	2	0	0	0	0.34337	1	2844	2844		5.2307	0	1	88047	+		36154	22628	21284	21285	43707	43707					0.05333678848205636
QSGRRLPQ	8	Unmodified	_QSGRRLPQ_					0	0	0			REV__ENST00000376659.9_1_6:30295111-30295306:+|nuORF	REV__ENST00000376659.9_1_6:30295111-30295306:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.266357421875	2	471.267407	940.520262	-0.24066	-0.00011342	-1.1371	-0.00053588	-1.3778	-0.0006493	471.26686111199166	13.975	0.18272	13.975	13.872	14.055	0					13	5	3	0	0	0	0.44734	1	603	603		6.7232	0	1	124940	+		36155	20492	21285	21286	43708	43708					0.047622410803683124
QSGTPRGGALL	11	Unmodified	_QSGTPRGGALL_					0	0	0		ENST00000570844.1_1_16:30002083-30002886:+|nuORF;nc|ENSG00000149930|Q9UL54-2|TAOK2	ENST00000570844.1_1_16:30002083-30002886:+|nuORF	ENST00000570844.1_1_16:30002083-30002886:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2508544921875	2	528.793455	1055.57236	-0.58685	-0.00031032	-1.6663	-0.00088115	-2.2532	-0.0011915	528.7920802005698	34.922	0.14094	35	34.947	35.088	0.077377					6	4	2	0	0	0	0.32557	1	6958	6958		10.8	2.644	1	46769			36156	12025	21286	21287	43709	43709					0.04679359703482078
QSHTPWSSS	9	Unmodified	_QSHTPWSSS_					0	0	0			REV__nc|ENSG00000174600|Q99788-2|CMKLR1	REV__nc|ENSG00000174600|Q99788-2|CMKLR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.26434326171875	2	508.725238	1015.43592	0.3259	0.00016579	-2.9716	-0.0015117	-2.6457	-0.001346	508.7239434634247	21.651	0.13514	21.651	21.545	21.68	0					5	4	2	0	0	0	0.25988	1	2887	2887		3.9444	0.3479	1	15722	+		36157	17843	21287	21288	43710	43710					-0.07117754527030229
QSIAFISRL	9	Unmodified	_QSIAFISRL_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8035278320312	2	517.803291	1033.59203	0.24579	0.00012727	0.73418	0.00038016	0.97997	0.00050743	517.8034650789942	59.474	0.46052	59.474	59.215	59.675	0					35	15	3	0	0	0	0.08842	1	14492	14492		61.09	15.39	1	862840			36158	2239	21288	21289	43711	43711					0.07657735714224145
QSIAFISRL	9	Unmodified	_QSIAFISRL_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8036499023438	2	517.803291	1033.59203	0.27472	0.00014225	1.0113	0.00052365	1.286	0.0006659	517.8034613004079	59.273	0.49879	59.364	59.101	59.6	0.091305					39	17	3	0	0	0	0.13296	1	14446	14446		33.445	1.1394	1	894260			36159	2239	21288	21289	43712	43712					0.07657735714224145
QSIAFISRL	9	Unmodified	_QSIAFISRL_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8038940429688	2	517.803291	1033.59203	0.44069	0.00022819	0.91518	0.00047388	1.3559	0.00070207	517.8035288407309	59.434	0.56046	59.423	59.06	59.621	-0.011486					40	19	3	0	0	0	0.048871	1	14466	14466		53.317	15.141	1	937540			36160	2239	21288	21289	43713	43713					0.07657735714224145
QSIFPTIPK	9	Unmodified	_QSIFPTIPK_					0	0	0		ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.80029296875	2	515.800217	1029.58588	0.65886	0.00033984	-0.33684	-0.00017374	0.32202	0.0001661	515.7999763301603	54.588	0.78792	54.588	54.076	54.864	0					68	28	4	0	0	0	0.036702	1	12970	12970		71.708	17.875	1	912020			36161	8411	21289	21290	43714	43714					0.07227217482704873
QSIFPTIPK	9	Unmodified	_QSIFPTIPK_					0	0	0		ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.8002319335938	2	515.800217	1029.58588	0.5342	0.00027554	-0.34699	-0.00017898	0.1872	9.656E-05	515.8000839381222	54.581	0.8525	54.644	54.088	54.941	0.063202					71	31	3	0	0	0	0.09758	1	13024	13024		38.615	6.3093	1	958960			36162	8411	21289	21290	43715	43715					0.07227217482704873
QSIFPTIPK	9	Unmodified	_QSIFPTIPK_					0	0	0		ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	ENSG00000215712|ENST00000400788|TMEM242	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.8001708984375	2	515.800217	1029.58588	0.5033	0.0002596	-0.24934	-0.00012861	0.25396	0.00013099	515.8001215310325	54.677	0.75285	54.662	54.197	54.95	-0.015919					62	26	3	0	0	0	0.073988	1	13010	13010		43.982	11.196	1	883770			36163	8411	21289	21290	43716	43716					0.07227217482704873
QSIHIGERP	9	Unmodified	_QSIHIGERP_					0	0	0		ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2319946289062	2	518.780348	1035.54614	0.35218	0.00018271	1.1218	0.00058198	1.474	0.00076468	518.7811105565821	29.258	0.33967	29.271	29.161	29.5	0.012266					14	11	2	0	0	0	0.25843	1	5272	5272		5.7319	0	1	77614			36164	4421	21290	21291	43717	43717					0.029790905319941885
QSIHIGERP	9	Unmodified	_QSIHIGERP_					0	0	0		ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	518.780348	1035.54614	0.59861	0.00031055	0.36283	0.00018823	0.96144	0.00049878	518.7806278715386	29.375	0.32798	29.375	29.193	29.521	0	0.051996	-0.0004609	NaN	5.7319	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79358			36165	4421	21290	21291							0.029790905319941885
QSIIRPLTV	9	Unmodified	_QSIIRPLTV_					0	0	0		nc|ENSG00000172139|Q4G0N8-2|SLC9C1;ENSG00000172139|ENST00000305815|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.8091430664062	2	513.818941	1025.62333	0.50804	0.00026104	-0.12219	-6.2782E-05	0.38585	0.00019826	513.81884351469	44.518	0.49944	44.518	44.33	44.829	0					27	17	2	0	0	0	0.19083	2	9840	9840;9912		24.991	2.2547	1	273400			36166	6604	21291	21292	43718;43719	43718					0.11154308748314179
QSIIRPLTV	9	Unmodified	_QSIIRPLTV_					0	0	0		nc|ENSG00000172139|Q4G0N8-2|SLC9C1;ENSG00000172139|ENST00000305815|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8191528320312	2	513.818941	1025.62333	0.44386	0.00022807	0.27142	0.00013946	0.71529	0.00036753	513.8188945764981	44.479	0.43776	44.547	44.274	44.711	0.068569					35	15	3	0	0	0	0.10059	2	9866	9817;9866		38.176	8.335	1	295920			36167	6604	21291	21292	43720;43721	43721					0.11154308748314179
QSIPAVLEI	9	Unmodified	_QSIPAVLEI_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F;nc|ENSG00000128524|Q16864-2|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.2844543457031	2	485.2844	968.554247	0.57057	0.00027689	-0.1179	-5.7216E-05	0.45266	0.00021967	485.28416220506745	74.614	0.62084	74.614	74.313	74.934	0					46	21	3	0	0	0	0.048637	1	19150	19150		53.404	3.8497	1	790190			36168	3372	21292	21293	43722	43722					0.06871224728752168
QSIPAVLEI	9	Unmodified	_QSIPAVLEI_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F;nc|ENSG00000128524|Q16864-2|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.28424072265625	2	485.2844	968.554247	0.22057	0.00010704	0.26393	0.00012808	0.4845	0.00023512	485.28437016490255	74.515	0.67511	74.567	74.296	74.971	0.052361					48	23	3	0	0	0	0.048637	1	19076	19076		53.404	3.8497	1	753280			36169	3372	21292	21293	43723	43723					0.06871224728752168
QSIPAVLEI	9	Unmodified	_QSIPAVLEI_					0	0	0		ENSG00000128524|ENST00000249289|ATP6V1F;nc|ENSG00000128524|Q16864-2|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	ENSG00000128524|ENST00000249289|ATP6V1F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2848205566406	2	485.2844	968.554247	0.48399	0.00023487	-0.26305	-0.00012766	0.22094	0.00010722	485.2842083770574	74.642	0.67461	74.611	74.357	75.032	-0.031013					45	23	3	0	0	0	0.026579	2	19093	19093;19141		61.602	3.8799	1	905510			36170	3372	21292	21293	43724;43725	43724					0.06871224728752168
QSISARSGPA	10	Unmodified	_QSISARSGPA_					0	0	0			REV__ENSG00000130158|ENST00000294618|DOCK6	REV__ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7645568847656	2	487.256705	972.498858	0.083137	4.0509E-05	0.3018	0.00014705	0.38494	0.00018756	487.2566913173083	18.133	0.39991	18.016	17.784	18.184	-0.11739					24	13	2	0	0	0	0.31986	1	1825	1825		4.897	1.3005	1	100700	+		36171	15439	21293	21294	43726	43726					0.011508112609931231
QSKNLYKIPL	10	Unmodified	_QSKNLYKIPL_					0	0	0		nc|ENSG00000136895|Q5VVW2-5|GARNL3;ENSG00000136895|ENST00000373387|GARNL3;nc|ENSG00000136895|Q5VVW2-4|GARNL3;ENST00000481242.5_1_9:130127572-130155530:+|nuORF;ENST00000496711.5_1_9:130126995-130155530:+|nuORF	nc|ENSG00000136895|Q5VVW2-5|GARNL3	nc|ENSG00000136895|Q5VVW2-5|GARNL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8578491210938	2	602.358431	1202.70231	0.3318	0.00019986	1.7284	0.0010411	2.0602	0.001241	602.3595864933943	94.213	0.37823	94.213	94.074	94.452	0					40	33	2	0	0	0	0.32132	1	25106	25106		1.4819	0.28856	1	83394			36172	4011	21294	21295	43727	43727					0.1090653598262179
QSLGLNLVKI	10	Unmodified	_QSLGLNLVKI_					0	0	0		nc|ENSG00000197181|Q8TC59-2|PIWIL2;ENSG00000197181|ENST00000356766|PIWIL2	nc|ENSG00000197181|Q8TC59-2|PIWIL2	nc|ENSG00000197181|Q8TC59-2|PIWIL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8399047851562	2	542.839874	1083.66519	0.52888	0.0002871	-0.4538	-0.00024634	0.075087	4.076E-05	542.8394484366556	52.527	0.83706	52.527	52.123	52.96	0					60	25	4	0	0	0	0.10215	1	12400	12400		47.594	3.6125	1	2372200			36173	7942	21295	21296	43728	43728					0.12670864436836382
QSLIEALNF	9	Unmodified	_QSLIEALNF_					0	0	0			REV__ENSG00000105556|ENST00000264819|MIER2	REV__ENSG00000105556|ENST00000264819|MIER2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2837524414062	2	517.779482	1033.54441	0.39388	0.00020395	-0.10063	-5.2105E-05	0.29325	0.00015184	517.7793112559326	59.188	0.70617	59.173	58.86	59.566	-0.014267					74	23	4	0	0	0	0.23007	1	14455	14455		19.257	0	1	2620100	+		36174	14463	21296	21297	43729	43729					0.028980367233543802
QSLKTTSL	8	Unmodified	_QSLKTTSL_					0	0	0		Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|40|2|sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|40|2|sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|40|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.25189208984375	2	439.2531	876.491647	0.09915	4.3552E-05	-1.5337	-0.00067369	-1.4346	-0.00063014	439.2522541002184	80.59	0.85472	80.563	80.233	81.088	-0.026825					49	32	2	0	0	0	0.45942	1	20926	20926		2.5775	2.5775	1	781730			36175	12385	21297	21298	43730	43730					0.04846078660580133
QSLLVDSQA	9	Unmodified	_QSLLVDSQA_					0	0	0		nc|ENSG00000120949|P28908-3|TNFRSF8;ENSG00000120949|ENST00000263932|TNFRSF8	nc|ENSG00000120949|P28908-3|TNFRSF8	nc|ENSG00000120949|P28908-3|TNFRSF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.27484130859375	2	480.753464	959.492375	-0.086127	-4.1406E-05	1.4315	0.00068818	1.3453	0.00064678	480.7542578653178	13.056	0.51858	12.957	12.757	13.276	-0.099291					21	17	2	0	0	0	0.24848	1	291	291		13.906	0	1	23826			36176	2977	21298	21299	43731	43731					0.011008733096105061
QSLLVDSQA	9	Unmodified	_QSLLVDSQA_					0	0	0		nc|ENSG00000120949|P28908-3|TNFRSF8;ENSG00000120949|ENST00000263932|TNFRSF8	nc|ENSG00000120949|P28908-3|TNFRSF8	nc|ENSG00000120949|P28908-3|TNFRSF8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	480.753464	959.492375	-0.15341	-7.3754E-05	1.5008	0.00072153	1.3474	0.00064777	480.754218461367	12.984	0.3587	12.984	12.815	13.174	0	0.013854	4.1983E-05	NaN	13.906	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29560			36177	2977	21298	21299							0.011008733096105061
QSLLVSCRL	9	Unmodified	_QSLLVSCRL_					0	0	0			REV__ENST00000305596.7_1_16:30363913-30364069:-|nuORF	REV__ENST00000305596.7_1_16:30363913-30364069:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2644348144531	2	509.789327	1017.5641	0.39456	0.00020114	-1.3517	-0.00068906	-0.9571	-0.00048792	509.7885305327261	21.506	0.58484	21.406	21.275	21.86	-0.10034					41	20	3	0	0	0	0.25706	1	2923	2923		6.7232	0	1	106940	+		36178	19851	21299	21300	43732	43732					0.05602089462490767
QSLSGPSPLF	10	Unmodified	_QSLSGPSPLF_					0	0	0			REV__ENST00000480958.1_1_17:41902775-41908980:-|nuORF	REV__ENST00000480958.1_1_17:41902775-41908980:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2837524414062	2	516.771657	1031.52876	0.16336	8.4419E-05	-1.3474	-0.0006963	-1.184	-0.00061188	516.770849498624	59.646	0.96503	59.646	59.133	60.098	0					57	33	2	0	0	0	0.29038	1	14462	14462		18.146	0	1	904830	+		36179	21482	21300	21301	43733	43733					0.014257502063173888
QSLTAPPPNNF	11	Unmodified	_QSLTAPPPNNF_					0	0	0			REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF	REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.3067626953125	2	593.29857	1184.58259	0.72507	0.00043018	-2.0774	-0.0012325	-1.3523	-0.00080231	593.2959830169805	54.8	0.67063	54.784	54.335	55.006	-0.015923					38	23	3	0	0	0	0.29518	1	13095	13095		22.658	5.5452	1	212680	+		36180	15924	21301	21302	43734	43734					-0.002320773619658212
QSLTAPPPNNF	11	Unmodified	_QSLTAPPPNNF_					0	0	0			REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF	REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	593.29857	1184.58259	0.69204	0.00041058	-2.6509	-0.0015728	-1.9589	-0.0011622	593.2960890290018	54.452	0.63191	54.515	54.063	54.694	0.063206	-0.13456	-0.00042577	NaN	22.658	30	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231990	+		36181	15924	21301	21302							-0.002320773619658212
QSLTAPPPNNF	11	Unmodified	_QSLTAPPPNNF_					0	0	0			REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF	REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	593.29857	1184.58259	0.72507	0.00043018	-2.0774	-0.0012325	-1.3523	-0.00080231	593.2959830169805	54.8	0.67063	54.784	54.335	55.006	-0.015923	0.13456	0.00025483	NaN	22.658	38	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212680	+		36182	15924	21301	21302							-0.002320773619658212
QSLYTFCSF	9	Unmodified	_QSLYTFCSF_					0	0	0			REV__nc|ENSG00000198342|Q9H7R0-2|ZNF442	REV__nc|ENSG00000198342|Q9H7R0-2|ZNF442	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2698364257812	2	548.244418	1094.47428	0.53955	0.00029581	0.54199	0.00029714	1.0815	0.00059295	548.244572463478	49.041	0.80185	49.041	48.798	49.6	0					85	28	4	0	0	0	0.24848	1	11387	11387		13.906	4.5229	1	1604000	+		36183	18818	21302	21303	43735	43735					-0.0691758493674115
QSLYTFCSF	9	Unmodified	_QSLYTFCSF_					0	0	0			REV__nc|ENSG00000198342|Q9H7R0-2|ZNF442	REV__nc|ENSG00000198342|Q9H7R0-2|ZNF442	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.269775390625	2	548.244418	1094.47428	0.65799	0.00036074	0.41805	0.00022919	1.076	0.00058993	548.244875339197	49.835	0.49121	49.88	49.801	50.292	0.044888					23	18	3	0	0	0	0.2451	1	11490	11490		6.7232	0	1	216880	+		36184	18818	21302	21303	43736	43736					-0.0691758493674115
QSLYTFCSF	9	Unmodified	_QSLYTFCSF_					0	0	0			REV__nc|ENSG00000198342|Q9H7R0-2|ZNF442	REV__nc|ENSG00000198342|Q9H7R0-2|ZNF442	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2698974609375	2	548.244418	1094.47428	0.48775	0.00026741	0.4513	0.00024742	0.93905	0.00051483	548.2445177121378	49.107	0.7338	49.152	48.935	49.669	0.044891					77	26	4	0	0	0	0.24848	1	11441	11441		9.3831	1.473	1	1369500	+		36185	18818	21302	21303	43737	43737					-0.0691758493674115
QSNALLVQL	9	Unmodified	_QSNALLVQL_					0	0	0		SNX10|p.S135Lfs*17|1|0.33|ENSG00000086300|chr7:26371910-26371910|T/-|frameshift_variant;ENSG00000086300|ENST00000338523|SNX10;chr7:26293158-26346420|490|14.55|0.85|4.1|+|ENST00000396376|SNX10,SNX10	SNX10|p.S135Lfs*17|1|0.33|ENSG00000086300|chr7:26371910-26371910|T/-|frameshift_variant	SNX10|p.S135Lfs*17|1|0.33|ENSG00000086300|chr7:26371910-26371910|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.287353515625	2	493.287474	984.560395	0.49793	0.00024562	-0.26137	-0.00012893	0.23656	0.00011669	493.287241999578	67.581	0.64591	67.659	67.354	68	0.078041					53	22	3	0	0	0	0.014206	1	16987	16987		72.968	4.8872	1	745710			36186	176	21303	21304	43738	43738					0.06749742960278127
QSNPKVMNL	9	Oxidation (M)	_QSNPKVM(Oxidation (M))NL_		QSNPKVM(1)NL		QSNPKVM(120)NL	0	0	1		nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13	nc|ENSG00000212789|Q8NFI4|ST13P5	nc|ENSG00000212789|Q8NFI4|ST13P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.7683715820312	2	523.768591	1045.52263	0.37664	0.00019727	-0.60888	-0.00031891	-0.23224	-0.00012164	523.7682393448582	24.76	1.1628	24.704	24.376	25.539	-0.055931					91	40	3	0	0	0	0.0010463	1	3844	3844		122.18	58.219	1	924180			36187	1584	21304	21305	43739	43739		196			0.0016890870317638473
QSNPKVMNL	9	Oxidation (M)	_QSNPKVM(Oxidation (M))NL_		QSNPKVM(1)NL		QSNPKVM(130)NL	0	0	1		nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13	nc|ENSG00000212789|Q8NFI4|ST13P5	nc|ENSG00000212789|Q8NFI4|ST13P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.7683715820312	2	523.768591	1045.52263	0.20781	0.00010885	-0.47144	-0.00024693	-0.26363	-0.00013808	523.7682960896467	24.688	1.2557	24.656	24.344	25.599	-0.031408					92	43	3	0	0	0	0.00014042	2	3829	3829;3877		134.3	70.335	1	908570			36188	1584	21304	21305	43740;43741	43740		196			0.0016890870317638473
QSNPKVMNL	9	Oxidation (M)	_QSNPKVM(Oxidation (M))NL_					0	0	1		nc|ENSG00000212789|Q8NFI4|ST13P5;ENSG00000100380|ENST00000216218|ST13	nc|ENSG00000212789|Q8NFI4|ST13P5	nc|ENSG00000212789|Q8NFI4|ST13P5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	523.768591	1045.52263	0.45494	0.00023828	-0.78522	-0.00041127	-0.33028	-0.00017299	523.7681669678957	24.66	1.3795	24.66	23.917	25.296	0	-0.013661	-0.00018635	NaN	134.3	86	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	784060			36189	1584	21304	21305				196			0.0016890870317638473
QSNPSTGLLYK	11	Unmodified	_QSNPSTGLLYK_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2151794433594	3	403.215427	1206.62445	-0.27846	-0.00011228	-0.68116	-0.00027466	-0.95963	-0.00038694	403.21514378943596	15.965	0.83723	15.965	15.624	16.461	0					50	29	2	0	0	0	0.38765	1	1146	1146		12.856	0.62836	1	499940	+		36190	17664	21305	21306	43742	43742					0.029404783265590595
QSPAGAARPG	10	Unmodified	_QSPAGAARPG_					0	0	0		ENST00000521197.5_1_7:27191940-27192297:+|nuORF	ENST00000521197.5_1_7:27191940-27192297:+|nuORF	ENST00000521197.5_1_7:27191940-27192297:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7665100097656	2	456.238316	910.462078	-0.045552	-2.0782E-05	0.20315	9.2685E-05	0.1576	7.1902E-05	456.238334187039	16.597	0.44805	16.483	16.247	16.695	-0.11434					24	15	2	0	0	0	0.31847	1	1342	1342		6.7232	1.4925	1	38987			36191	11486	21306	21307	43743	43743					0.0032655943509780627
QSQLLGSIC	9	Unmodified	_QSQLLGSIC_					0	0	0		ENST00000479100.1_1_1:32136193-32138672:-|nuORF	ENST00000479100.1_1_1:32136193-32138672:-|nuORF	ENST00000479100.1_1_1:32136193-32138672:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.743896484375	2	474.744585	947.474617	0.14723	6.9897E-05	-1.0755	-0.00051058	-0.92825	-0.00044068	474.74402214339926	75.276	0.63707	75.276	75.012	75.649	0					50	22	3	0	0	0	0.088443	1	19350	19350		39.95	9.7249	1	985380			36192	10987	21307	21308	43744	43744					-0.0012216521688515058
QSQLLGSIC	9	Unmodified	_QSQLLGSIC_					0	0	0		ENST00000479100.1_1_1:32136193-32138672:-|nuORF	ENST00000479100.1_1_1:32136193-32138672:-|nuORF	ENST00000479100.1_1_1:32136193-32138672:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7440490722656	2	474.744585	947.474617	0.29664	0.00014083	-0.9167	-0.0004352	-0.62005	-0.00029437	474.74409326210235	75.242	0.62128	75.294	75.024	75.646	0.052361					53	22	3	0	0	0	0.13748	1	19328	19328		32.786	3.7041	1	726910			36193	10987	21307	21308	43745	43745					-0.0012216521688515058
QSQLLGSIC	9	Unmodified	_QSQLLGSIC_					0	0	0		ENST00000479100.1_1_1:32136193-32138672:-|nuORF	ENST00000479100.1_1_1:32136193-32138672:-|nuORF	ENST00000479100.1_1_1:32136193-32138672:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.74420166015625	2	474.744585	947.474617	0.44179	0.00020974	-1.3329	-0.00063281	-0.89115	-0.00042307	474.74395013831526	75.273	0.7451	75.242	75.031	75.777	-0.031479					62	27	3	0	0	0	0.13748	1	19370	19370		32.786	3.7041	1	1029100			36194	10987	21307	21308	43746	43746					-0.0012216521688515058
QSQSPAQPAP	10	Unmodified	_QSQSPAQPAP_					0	0	0			REV__ENST00000517348.1_1_7:39125465-39413102:+|nuORF	REV__ENST00000517348.1_1_7:39125465-39413102:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2336730957031	2	505.748713	1009.48287	0.10138	5.1274E-05	-0.30078	-0.00015212	-0.1994	-0.00010085	505.7486839962721	19.077	0.56579	19.077	18.895	19.461	0					38	19	4	0	0	0	0.38773	1	2165	2165		5.7319	1.4026	1	74003	+		36195	14526	21308	21309	43747	43747					-0.021488949759145726
QSQTNLPVLQL	11	Unmodified	_QSQTNLPVLQL_					0	0	0			REV__ENSG00000160218|ENST00000291574|TRAPPC10	REV__ENSG00000160218|ENST00000291574|TRAPPC10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.273681640625	2	620.848427	1239.6823	0.04415	2.7411E-05	-0.63268	-0.0003928	-0.58853	-0.00036539	620.8478955716215	46.471	0.24157	46.471	46.324	46.566	0					12	8	2	0	0	0	0.31791	1	10486	10486		20.415	2.0414	1	199300	+		36196	16890	21309	21310	43748	43748					0.07204740251995645
QSRAKFTF	8	Unmodified	_QSRAKFTF_					0	0	0		ENST00000361368.6_1_7:98647318-98649983:-|nuORF	ENST00000361368.6_1_7:98647318-98649983:-|nuORF	ENST00000361368.6_1_7:98647318-98649983:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2306823730469	2	492.766709	983.518865	0.14462	7.1264E-05	3.3337	0.0016427	3.4783	0.001714	492.76852588419956	22.491	0.27019	22.446	22.379	22.649	-0.044867					10	8	2	0	0	0	0.34272	1	3184	3184		4.3292	0.38484	1	20681			36197	9690	21310	21311	43749	43749					0.026446069916232773
QSRFRRRCWRR	11	Unmodified	_QSRFRRRCWRR_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2827758789062	3	536.295526	1605.86475	0.18779	0.00010071	-0.26461	-0.00014191	-0.076815	-4.1196E-05	536.2955387964274	27.598	0.27144	27.586	27.374	27.645	-0.01156					13	8	2	0	0	0	0.47853	1	4710	4710		0.92553	0.47102	1	234320			36198	8586	21311	21312	43750	43750					0.08605033956291663
QSRLQTQL	8	Unmodified	_QSRLQTQL_					0	0	0		ENSG00000269720|ENST00000636079|CCDC194	ENSG00000269720|ENST00000636079|CCDC194	ENSG00000269720|ENST00000636079|CCDC194	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2870178222656	2	487.274898	972.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.766	1	12.667	12.167	13.167	-0.099291								0	0	0	0.36486	1	226	226		7.9102	0	1				36199	8691	21312	21313	43751	43751					0.047876881577167296
QSRNLAEELG	10	Unmodified	_QSRNLAEELG_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.7646484375	2	558.785827	1115.5571	0.35991	0.00020111	3.8453	0.0021487	4.2052	0.0023498	559.2878359056217	30.453	0.13946	30.453	30.359	30.499	0					6	4	2	0	0	0	0.29589	1	5553	5553		22.736	3.4793	1	74240			36200	6350	21313	21314	43752	43752					0.0039444811559405935
QSRPPQMLF	9	Unmodified	_QSRPPQMLF_					0	0	0		ENSG00000278057|ENST00000617225|TEX28	ENSG00000278057|ENST00000617225|TEX28	ENSG00000278057|ENST00000617225|TEX28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.833984375	2	552.286951	1102.55935	0.14013	7.7393E-05	1.651	0.0009118	1.7911	0.00098919	552.2875670152547	60.158	0.43768	60.147	59.94	60.378	-0.011486					22	15	2	0	0	0	0.24913	1	14628	14628		7.9102	0	1	239150			36201	8739	21314	21315	43753	43753					0.012172053197218702
QSRRAISI	8	Unmodified	_QSRRAISI_					0	0	0		ENST00000503486.6_1_5:178195542-178224582:-|nuORF	ENST00000503486.6_1_5:178195542-178224582:-|nuORF	ENST00000503486.6_1_5:178195542-178224582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7774353027344	2	465.777608	929.540663	0.069502	3.2372E-05	-1.2182	-0.00056741	-1.1487	-0.00053504	465.7775319258724	71.513	3.7412	71.57	70.875	74.617	0.056572					306	134	4	0	0	0	0.44389	1	18034	18034		7.9102	0	1	2579700			36202	11291	21315	21316	43754	43754					0.07307411740168845
QSRRLKENFK	10	Unmodified	_QSRRLKENFK_					0	0	0			REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.9309387207031	3	435.917716	1304.73132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.311	1	37.311	36.811	37.811	0								0	0	0	0.3593	1	7670	7670		10.899	0.88269	1		+		36203	18396	21316	21317	43755	43755					0.09114073331602413
QSRTAAPL	8	Unmodified	_QSRTAAPL_					0	0	0			REV__ENST00000468293.5_1_7:150707648-150709543:+|nuORF	REV__ENST00000468293.5_1_7:150707648-150709543:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2290954589844	2	422.237784	842.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.338	1	54.322	53.822	54.822	-0.015923								0	0	0	0.35843	1	12891	12891		10.824	2.2306	1		+		36204	21320	21317	21318	43756	43756					0.03348345066183356
QSRWDFTVL	9	Unmodified	_QSRWDFTVL_					0	0	0			REV__ENST00000391761.5_1_19:54598488-54598698:-|nuORF	REV__ENST00000391761.5_1_19:54598488-54598698:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8004760742188	2	576.29583	1150.57711	0.32686	0.00018837	1.5959	0.00091971	1.9228	0.0011081	576.8000761800407	92.202	1.0236	92.291	91.584	92.608	0.089195					132	68	4	0	0	0	0.28674	1	24495	24495		10.824	0	1	413410	+		36205	17605	21318	21319	43757	43757					0.007842438462375867
QSSARLHPDVL	11	Unmodified	_QSSARLHPDVL_					0	0	0			REV__ENST00000461783.7_3_6:155574137-155575116:+|nuORF	REV__ENST00000461783.7_3_6:155574137-155575116:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.56915283203125	3	408.222805	1221.64658	-0.1872	-7.6419E-05	1.0136	0.00041376	0.82636	0.00033734	408.2225192656769	15.797	0.40804	15.687	15.408	15.816	-0.10981					16	13	2	0	0	0	0.33073	1	1085	1085		3.5927	0.74939	1	11276	+		36206	21225	21319	21320	43758	43758					0.044627027949900366
QSSDEWSHS	9	Unmodified	_QSSDEWSHS_					0	0	0			REV__ENST00000536066.1_1_12:2967806-2973707:-|nuORF	REV__ENST00000536066.1_1_12:2967806-2973707:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8118896484375	2	531.709785	1061.40502	0.21093	0.00011215	-1.9788	-0.0010521	-1.7678	-0.00093998	531.7084945560765	76.253	0.54283	76.306	76.076	76.619	0.053413					28	18	2	0	0	0	0.25323	1	19606	19606		10.074	0	1	256420	+		36207	14708	21320	21321	43759	43759					-0.12322952631939188
QSSERPLFL	9	Unmodified	_QSSERPLFL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.78955078125	2	538.790381	1075.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.764	1	48.809	48.309	49.309	0.044891								0	0	0	0.044423	1	11182	11182		62.573	31.936	1				36208	6378	21321	21322	43760	43760					0.03144841471953441
QSSERPLFL	9	Unmodified	_QSSERPLFL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7906494140625	2	538.790381	1075.56621	0.51036	0.00027498	0.054401	2.9311E-05	0.56476	0.00030429	538.7904225871731	48.749	0.54275	48.781	48.471	49.014	0.032043					29	19	2	0	0	0	0.047483	1	11162	11162		53.833	21.527	1	679070			36209	6378	21321	21322	43761	43761					0.03144841471953441
QSSTGHLIL	9	Unmodified	_QSSTGHLIL_					0	0	0			REV__nc|ENSG00000175426|P29120-2|PCSK1	REV__nc|ENSG00000175426|P29120-2|PCSK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2644348144531	2	478.263999	954.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.11	1	98.103	97.603	98.603	-0.0068283								0	0	0	0.2575	1	26277	26277		3.9444	0	1		+		36210	23096	21322	21323	43762	43762					0.03436883409153779
QSSVRLAAP	9	Unmodified	_QSSVRLAAP_					0	0	0			REV__ENSG00000182095|ENST00000430969|TNRC18	REV__ENSG00000182095|ENST00000430969|TNRC18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.75360107421875	2	464.764166	927.513779	-0.13838	-6.4313E-05	-0.19613	-9.1155E-05	-0.33451	-0.00015547	464.764031319196	26.512	0.68729	26.512	26.042	26.729	0					44	23	2	0	0	0	0.31417	1	4426	4426		6.7232	0	1	151810	+		36211	18177	21323	21324	43763	43763					0.047123031289856954
QSTALEQKL	9	Unmodified	_QSTALEQKL_					0	0	0			REV__nc|ENSG00000127946|O00291-3|HIP1	REV__nc|ENSG00000127946|O00291-3|HIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.2643127441406	2	509.282389	1016.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.789	1	21.739	21.239	22.239	-0.049377								0	0	0	0.23852	1	2946	2946		10.074	1.3285	1		+		36212	15355	21324	21325	43764	43764					0.04261135235049096
QSVGPLNLKG	10	Unmodified	_QSVGPLNLKG_					0	0	0		ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2336730957031	2	506.792924	1011.57129	0.12773	6.4734E-05	0.34244	0.00017355	0.47017	0.00023828	506.79288915254807	18.794	0.70458	18.794	18.563	19.267	0					44	24	3	0	0	0	0.31691	1	2165	2165		9.3831	4.6271	1	92057			36213	638	21325	21326	43765	43765					0.06597145334569632
QSVHVKRKR	9	Unmodified	_QSVHVKRKR_					0	0	0		ENST00000367478.8_1_1:186301409-186302262:-|nuORF	ENST00000367478.8_1_1:186301409-186302262:-|nuORF	ENST00000367478.8_1_1:186301409-186302262:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.7755737304688	2	569.351806	1136.68906	0.45958	0.00026166	-1.8887	-0.0010753	-1.4291	-0.00081368	569.3505115568826	83.777	0.34689	83.76	83.509	83.856	-0.016823					19	15	2	0	0	0	0.25988	1	21848	21848		3.9444	0.3479	1	125950			36214	9736	21326	21327	43766	43766					0.12618142713881753
QSVHVKRKR	9	Unmodified	_QSVHVKRKR_					0	0	0		ENST00000367478.8_1_1:186301409-186302262:-|nuORF	ENST00000367478.8_1_1:186301409-186302262:-|nuORF	ENST00000367478.8_1_1:186301409-186302262:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.351806	1136.68906	0.51875	0.00029535	-1.8568	-0.0010572	-1.3381	-0.00076183	569.3506938255455	83.726	0.40424	83.726	83.455	83.859	0	-0.016879	1.5956E-05	NaN	3.9444	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87066			36215	9736	21326	21327							0.12618142713881753
QSVQKRYLR	9	Unmodified	_QSVQKRYLR_					0	0	0		ENST00000531719.5_1_11:46894680-46894974:+|nuORF	ENST00000531719.5_1_11:46894680-46894974:+|nuORF	ENST00000531719.5_1_11:46894680-46894974:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.341064453125	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.33	1	104.33	103.83	104.83	0								0	0	0	0.25631	1	27700	27700		4.3292	0	1				36216	11628	21327	21328	43767	43767					0.09147016757128767
QSVTRWPHPP	10	Unmodified	_QSVTRWPHPP_					0	0	0			REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8148193359375	2	602.814722	1203.61489	0.30469	0.00018367	0.25679	0.00015479	0.56148	0.00033847	602.8148273932817	16.044	0.94593	15.929	15.692	16.638	-0.11434					88	32	4	0	0	0	0.35231	1	1182	1182		12.241	12.241	1	1176000	+		36217	23068	21328	21329	43768	43768					0.021227548316801403
QSVTRWPHPP	10	Unmodified	_QSVTRWPHPP_					0	0	0			REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	602.814722	1203.61489	0.30469	0.00018367	0.25679	0.00015479	0.56148	0.00033847	602.8148273932817	16.044	0.94593	15.929	15.692	16.638	-0.11434	-0.0065777	-1.7184E-06	NaN	12.241	88	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1176000	+		36218	23068	21328	21329							0.021227548316801403
QSWRERLA	8	Unmodified	_QSWRERLA_					0	0	0		ENSG00000171456|ENST00000375687|ASXL1;nc|ENSG00000171456|Q8IXJ9-2|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7593994140625	2	523.280515	1044.54648	0.24221	0.00012674	-2.2437	-0.0011741	-2.0015	-0.0010474	523.2793738577127	34.113	0.42316	34.18	34.099	34.522	0.066704					22	14	2	0	0	0	0.34131	1	6667	6667		12.532	2.3482	1	104350			36219	6544	21329	21330	43769	43769					0.02598510251868902
QSWSGSPCPGG	11	Unmodified	_QSWSGSPCPGG_					0	0	0			REV__nc|ENSG00000185664|P40967-4|PMEL	REV__nc|ENSG00000185664|P40967-4|PMEL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8170776367188	2	531.719098	1061.42364	0.53455	0.00028423	0.26157	0.00013908	0.79612	0.00042331	531.719283116421	76.326	0.66277	76.294	76.02	76.682	-0.031487					37	23	2	0	0	0	0.33175	1	19587	19587		2.4985	0	1	360650	+		36220	18397	21330	21331	43770	43770					-0.10461114261738658
QTAKIKRPG	9	Unmodified	_QTAKIKRPG_					0	0	0			REV__ENST00000488285.1_1_9:130486913-130493681:+|nuORF	REV__ENST00000488285.1_1_9:130486913-130493681:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2511901855469	2	499.808908	997.603263	0.27049	0.0001352	0.27233	0.00013611	0.54282	0.00027131	499.80891731385117	27.184	0.48768	27.184	26.953	27.441	0					31	16	3	0	0	0	0.25938	1	4643	4643		4.3292	0	1	118600	+		36221	17362	21331	21332	43771	43771					0.1043655780838435
QTATTPARK	9	Unmodified	_QTATTPARK_					0	0	0			REV__ENST00000461142.3_1_1:1198606-1209210:-|nuORF	REV__ENST00000461142.3_1_1:1198606-1209210:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.2870788574219	2	487.274898	972.535243	-0.07399	-3.6054E-05	3.6124	0.0017602	3.5384	0.0017242	487.27540745473925	12.687	0.26001	12.687	12.555	12.815	0					17	8	3	0	0	0	0.28674	1	218	218		10.824	1.4408	1	15096	+		36222	16878	21332	21333	43772	43772					0.04787688157705361
QTATTPARK	9	Unmodified	_QTATTPARK_					0	0	0			REV__ENST00000461142.3_1_1:1198606-1209210:-|nuORF	REV__ENST00000461142.3_1_1:1198606-1209210:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	487.274898	972.535243	-0.07399	-3.6054E-05	3.6124	0.0017602	3.5384	0.0017242	487.27540745473925	12.687	0.26001	12.687	12.555	12.815	0	0.12835	0.0025002	NaN	10.824	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15096	+		36223	16878	21332	21333							0.04787688157705361
QTATTPARK	9	Unmodified	_QTATTPARK_					0	0	0			REV__ENST00000461142.3_1_1:1198606-1209210:-|nuORF	REV__ENST00000461142.3_1_1:1198606-1209210:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	487.274898	972.535243	-0.1387	-6.7583E-05	0.73	0.00035571	0.59131	0.00028813	487.2752290642867	12.498	0.26657	12.43	12.281	12.548	-0.06806	-0.12835	-0.00030876	NaN	10.824	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17815	+		36224	16878	21332	21333							0.04787688157705361
QTCRRTKR	8	Carbamidomethyl (C)	_QTC(Carbamidomethyl (C))RRTKR_	QTC(1)RRTKR		QTC(46)RRTKR		0	1	0		ENST00000438934.5_2_22:18979470-18980127:+|nuORF	ENST00000438934.5_2_22:18979470-18980127:+|nuORF	ENST00000438934.5_2_22:18979470-18980127:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3038940429688	2	553.303998	1104.59344	0.027456	1.5191E-05	-0.19642	-0.00010868	-0.16896	-9.3487E-05	553.3038827591824	39.628	1.3348	39.628	39.242	40.576	0					121	48	5	0	0	0	0.18275	1	8411	8411		46.021	46.021	1	5188800			36225	10540	21333	21334	43773	43773	15				0.045330465313327295
QTDFILVLK	9	Unmodified	_QTDFILVLK_					0	0	0		ENST00000538588.2_1_7:99821243-99844125:-|nuORF;nc|ENSG00000291122|Q8NAP1|CASTOR3P	ENST00000538588.2_1_7:99821243-99844125:-|nuORF	ENST00000538588.2_1_7:99821243-99844125:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8212280273438	2	538.82115	1075.62775	0.54721	0.00029485	-0.28075	-0.00015127	0.26646	0.00014358	538.8208027583308	63.393	0.77169	63.393	63.117	63.889	0					74	27	4	0	0	0	0.20881	1	15703	15703		21.537	15.805	1	956750			36226	11702	21334	21335	43774	43774					0.0929577317122039
QTDFILVLK	9	Unmodified	_QTDFILVLK_					0	0	0		ENST00000538588.2_1_7:99821243-99844125:-|nuORF;nc|ENSG00000291122|Q8NAP1|CASTOR3P	ENST00000538588.2_1_7:99821243-99844125:-|nuORF	ENST00000538588.2_1_7:99821243-99844125:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2953491210938	2	538.82115	1075.62775	0.53451	0.00028801	-0.29417	-0.0001585	0.24035	0.0001295	538.8207612390444	63.318	0.83438	63.413	63.096	63.93	0.095722					77	29	4	0	0	0	0.24471	1	15687	15687		8.1555	0	1	993210			36227	11702	21334	21335	43775	43775					0.0929577317122039
QTDFILVLK	9	Unmodified	_QTDFILVLK_					0	0	0		ENST00000538588.2_1_7:99821243-99844125:-|nuORF;nc|ENSG00000291122|Q8NAP1|CASTOR3P	ENST00000538588.2_1_7:99821243-99844125:-|nuORF	ENST00000538588.2_1_7:99821243-99844125:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2952880859375	2	538.82115	1075.62775	0.62808	0.00033842	-0.52633	-0.0002836	0.10175	5.4825E-05	538.8206428563757	63.405	0.66618	63.396	63.104	63.77	-0.0085526					64	23	4	0	0	0	0.23235	1	15703	15703		21.537	12.792	1	849430			36228	11702	21334	21335	43776	43776					0.0929577317122039
QTDLELLTL	9	Unmodified	_QTDLELLTL_					0	0	0		ENST00000475480.5_1_3:185199046-185216749:-|nuORF	ENST00000475480.5_1_3:185199046-185216749:-|nuORF	ENST00000475480.5_1_3:185199046-185216749:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2794189453125	2	523.292422	1044.57029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.317	1	33.38	32.88	33.88	0.062618								0	0	0	0.20238	1	6449	6449		21.747	1.293	1				36229	10934	21335	21336	43777	43777					0.04978886175013031
QTDLELLTL	9	Unmodified	_QTDLELLTL_					0	0	0		ENST00000475480.5_1_3:185199046-185216749:-|nuORF	ENST00000475480.5_1_3:185199046-185216749:-|nuORF	ENST00000475480.5_1_3:185199046-185216749:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2805786132812	2	523.292422	1044.57029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.757	1	33.824	33.324	34.324	0.066704								0	0	0	0.22377	1	6577	6577		14.838	1.7958	1				36230	10934	21335	21336	43778	43778					0.04978886175013031
QTEKVIKR	8	Unmodified	_QTEKVIKR_					0	0	0			REV__ENSG00000120563|ENST00000649382|LYZL1	REV__ENSG00000120563|ENST00000649382|LYZL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2485046386719	2	501.308741	1000.60293	-0.083499	-4.1859E-05	0.76709	0.00038455	0.68359	0.00034269	501.30904922340784	12.863	0.66539	12.795	12.58	13.245	-0.067495					38	22	2	0	0	0	0.34353	1	383	383		4.756	0	1	207500	+		36231	15088	21336	21337	43779	43779					0.10265138088516323
QTELKRTV	8	Unmodified	_QTELKRTV_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.78509521484375	2	487.785099	973.555644	0.31738	0.00015481	-0.10981	-5.3563E-05	0.20757	0.00010125	487.78500436219247	20.417	0.49322	20.417	20.157	20.65	0					37	17	3	0	0	0	0.40115	1	2553	2553		19.257	0	1	240950	+		36232	13679	21337	21338	43780	43780					0.0678085881751258
QTGQKVTDDMY	11	Unmodified	_QTGQKVTDDMY_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.1962890625	3	429.195815	1284.56562	0.065834	2.8256E-05	1.4475	0.00062125	1.5133	0.00064951	429.196390426125	35.941	0.53383	36.023	35.797	36.331	0.082355					44	19	4	0	0	0	0.46842	1	7273	7273		2.2527	0.16672	1	381210			36233	8053	21338	21339	43781	43781					-0.06528366030079269
QTGQKVTDDMY	11	Unmodified	_QTGQKVTDDMY_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	429.195815	1284.56562	0.033596	1.4419E-05	1.4202	0.00060955	1.4538	0.00062397	429.19633390722726	36.082	0.45011	36.082	35.882	36.332	0	0.035468	5.0055E-05	NaN	2.2527	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	381900			36234	8053	21338	21339							-0.06528366030079269
QTGQKVTDDMY	11	Unmodified	_QTGQKVTDDMY_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	429.195815	1284.56562	0.065834	2.8256E-05	1.4475	0.00062125	1.5133	0.00064951	429.196390426125	35.941	0.53383	36.023	35.797	36.331	0.082355	-0.023607	8.5153E-05	NaN	2.2527	44	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	381210			36235	8053	21338	21339							-0.06528366030079269
QTGQKVTDDMY	11	Unmodified	_QTGQKVTDDMY_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	429.195815	1284.56562	0.11424	4.9031E-05	1.2648	0.00054283	1.379	0.00059186	429.1965012291904	35.949	0.40571	36.035	35.79	36.196	0.086246	-0.011861	-0.00015013	NaN	2.2527	45	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405570			36236	8053	21338	21339							-0.06528366030079269
QTGRRWGMTF	10	Unmodified	_QTGRRWGMTF_					0	0	0			REV__ENST00000355155.5_2_8:100025513-100050691:+|nuORF	REV__ENST00000355155.5_2_8:100025513-100050691:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.8794860839844	3	413.87323	1238.59786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.599	1	22.599	22.099	23.099	0								0	0	0	0.35421	1	3194	3194		7.9454	2.162	1		+		36237	20182	21339	21340	43782	43782					-0.011894890457597285
QTHYKLHET	9	Unmodified	_QTHYKLHET_					0	0	0			REV__nc|ENSG00000131725|Q5JSH3-3|WDR44	REV__nc|ENSG00000131725|Q5JSH3-3|WDR44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.81982421875	2	578.790912	1155.56727	0.14521	8.4049E-05	0.26851	0.00015541	0.41372	0.00023946	578.7913611248345	39.17	0.61073	39.262	39.052	39.662	0.09267					30	21	2	0	0	0	0.25622	1	8324	8324		7.2892	0	1	162380	+		36238	15531	21340	21341	43783	43783					-0.004289441591254217
QTHYKLHET	9	Unmodified	_QTHYKLHET_					0	0	0			REV__nc|ENSG00000131725|Q5JSH3-3|WDR44	REV__nc|ENSG00000131725|Q5JSH3-3|WDR44	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	578.790912	1155.56727	-0.097814	-5.6614E-05	0.43127	0.00024962	0.33346	0.000193	578.7911778554941	39.357	0.5555	39.357	39.04	39.595	0	0.047469	5.5046E-05	NaN	7.2892	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152930	+		36239	15531	21340	21341							-0.004289441591254217
QTIPPPYVVR	10	Unmodified	_QTIPPPYVVR_					0	0	0		nc|ENSG00000269307|Q9NWV8-3|BABAM1;ENST00000595393.5_1_19:17378325-17387472:+|nuORF;nc|ENSG00000269307|Q9NWV8-2|BABAM1;ENST00000594247.5_1_19:17379766-17388064:+|nuORF;ENSG00000105393|ENST00000598188|BABAM1	nc|ENSG00000269307|Q9NWV8-3|BABAM1	nc|ENSG00000269307|Q9NWV8-3|BABAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.3374633789062	2	585.337498	1168.66044	0.52116	0.00030505	-0.21602	-0.00012645	0.30514	0.00017861	585.3373394740943	44.763	1.298	44.763	44.232	45.53	0					130	47	3	0	0	0	0.20294	1	9878	9878		49.554	20.473	1	1168700			36240	1974	21341	21342	43784	43784					0.08285980294067485
QTIPPPYVVR	10	Unmodified	_QTIPPPYVVR_					0	0	0		nc|ENSG00000269307|Q9NWV8-3|BABAM1;ENST00000595393.5_1_19:17378325-17387472:+|nuORF;nc|ENSG00000269307|Q9NWV8-2|BABAM1;ENST00000594247.5_1_19:17379766-17388064:+|nuORF;ENSG00000105393|ENST00000598188|BABAM1	nc|ENSG00000269307|Q9NWV8-3|BABAM1	nc|ENSG00000269307|Q9NWV8-3|BABAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.3377685546875	2	585.337498	1168.66044	0.40491	0.00023701	-0.066092	-3.8686E-05	0.33881	0.00019832	585.3374072840513	44.651	1.3705	44.719	44.174	45.545	0.068573					132	49	3	0	0	0	0.093201	1	9959	9959		49.554	26.818	1	946450			36241	1974	21341	21342	43785	43785					0.08285980294067485
QTIPPPYVVR	10	Unmodified	_QTIPPPYVVR_					0	0	0		nc|ENSG00000269307|Q9NWV8-3|BABAM1;ENST00000595393.5_1_19:17378325-17387472:+|nuORF;nc|ENSG00000269307|Q9NWV8-2|BABAM1;ENST00000594247.5_1_19:17379766-17388064:+|nuORF;ENSG00000105393|ENST00000598188|BABAM1	nc|ENSG00000269307|Q9NWV8-3|BABAM1	nc|ENSG00000269307|Q9NWV8-3|BABAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.3377685546875	2	585.337498	1168.66044	0.48106	0.00028158	-0.1831	-0.00010718	0.29796	0.00017441	585.3373435915502	44.642	1.2724	44.717	44.174	45.446	0.075047					133	46	3	0	0	0	0.093201	1	9953	9953		49.554	26.818	1	1106100			36242	1974	21341	21342	43786	43786					0.08285980294067485
QTIQLFLAK	9	Unmodified	_QTIQLFLAK_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.7446899414062	2	531.321317	1060.62808	1.1761	0.00062489	-1.1852	-0.00062971	-0.009065	-4.8164E-06	531.3207133393912	56.143	0.46231	56.143	55.907	56.37	0					26	16	2	0	0	0	0.12563	1	13469	13469		47.749	23.728	1	1137800			36243	273	21342	21343	43787	43787					0.1001919289108173
QTIQLFLAK	9	Unmodified	_QTIQLFLAK_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.74462890625	2	531.321317	1060.62808	0.91904	0.00048831	-1.0095	-0.00053639	-0.090502	-4.8086E-05	531.3209219980578	56.11	0.54928	56.181	55.905	56.454	0.070885					39	19	3	0	0	0	0.20167	1	13436	13436		29.082	22.876	1	1028900			36244	273	21342	21343	43788	43788					0.1001919289108173
QTIQLFLAK	9	Unmodified	_QTIQLFLAK_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7446899414062	2	531.321317	1060.62808	1.0614	0.00056393	-1.3436	-0.0007139	-0.28226	-0.00014997	531.3205438573083	56.233	0.43764	56.214	55.965	56.403	-0.019081					33	15	3	0	0	0	0.20167	1	13501	13501		22.736	16.531	1	996760			36245	273	21342	21343	43789	43789					0.1001919289108173
QTKFFFNGKK	10	Unmodified	_QTKFFFNGKK_					0	0	0			REV__nc|ENSG00000163535|Q562F6-2|SGO2	REV__nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.9085693359375	3	415.564391	1243.67134	0.26506	0.00011015	-0.22298	-9.2664E-05	0.042074	1.7484E-05	415.56445597571167	24.382	0.73952	24.31	23.905	24.645	-0.072559					37	24	2	0	0	0	0.31745	1	3730	3730		7.9454	3.8288	1	118730	+		36246	17068	21343	21344	43790	43790					0.05925382668374368
QTKKGCPLS	9	Unmodified	_QTKKGCPLS_					0	0	0			REV__ENST00000489998.5_1_1:157773664-157773814:-|nuORF	REV__ENST00000489998.5_1_1:157773664-157773814:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.27264404296875	2	481.260402	960.506251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.443	1	24.371	23.871	24.871	-0.072559								0	0	0	0.24264	1	3754	3754		8.7454	0.15213	1		+		36247	21599	21344	21345	43791	43791					0.02441827537052177
QTLAGDRHF	9	Unmodified	_QTLAGDRHF_					0	0	0			REV__ENSG00000127948|ENST00000461988|POR	REV__ENSG00000127948|ENST00000461988|POR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2468872070312	2	522.764697	1043.51484	0.71111	0.00037174	-1.2137	-0.00063448	-0.50258	-0.00026273	522.7642067645252	65.824	0.38324	65.824	65.488	65.871	0					19	13	2	0	0	0	0.25202	1	16347	16347		10.824	1.4765	1	134990	+		36248	15357	21345	21346	43792	43792					-0.005174825021185825
QTLAGDRHF	9	Unmodified	_QTLAGDRHF_					0	0	0			REV__ENSG00000127948|ENST00000461988|POR	REV__ENSG00000127948|ENST00000461988|POR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	522.764697	1043.51484	0.46808	0.00024469	-0.18039	-9.4302E-05	0.28768	0.00015039	522.7645965717577	65.671	0.40221	65.76	65.519	65.921	0.088882	-0.031666	0.00030465	NaN	10.824	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186220	+		36249	15357	21345	21346							-0.005174825021185825
QTLEEENKHL	10	Unmodified	_QTLEEENKHL_					0	0	0		ENST00000494389.5_1_2:197559796-197594150:+|nuORF;ENSG00000144395|ENST00000389175|CCDC150	ENST00000494389.5_1_2:197559796-197594150:+|nuORF	ENST00000494389.5_1_2:197559796-197594150:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5496520996094	3	414.210453	1239.60953	0.47814	0.00019805	-2.4445	-0.0010125	-1.9663	-0.00081448	414.20952156258966	20.336	0.53313	20.226	19.933	20.466	-0.11003					29	19	2	0	0	0	0.3213	1	2439	2439		1.9064	0.1641	1	124820			36250	4580	21346	21347	43793	43793					-0.0006901354142883065
QTLFLPEV	8	Unmodified	_QTLFLPEV_					0	0	0			REV__ENST00000449749.1_1_11:1798204-1798336:-|nuORF	REV__ENST00000449749.1_1_11:1798204-1798336:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.76629638671875	2	473.765843	945.517133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.522	1	76.49	75.99	76.99	-0.031487								0	0	0	0.36302	1	19698	19698		8.7454	0.83525	1		+		36251	21108	21347	21348	43794	43794					0.04219553183008884
QTLGELLTSH	10	Unmodified	_QTLGELLTSH_					0	0	0		ENST00000510994.5_1_3:134197018-134197102:-|nuORF	ENST00000510994.5_1_3:134197018-134197102:-|nuORF	ENST00000510994.5_1_3:134197018-134197102:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7930908203125	2	549.793121	1097.57169	0.19861	0.0001092	-0.43289	-0.000238	-0.23427	-0.0001288	549.7928553834968	15.585	0.39471	15.52	15.36	15.754	-0.064413					20	12	2	0	0	0	0.38515	1	1079	1079		6.2058	0.013936	1	87228			36252	11379	21348	21349	43795	43795					0.02680520263766084
QTLGHFVPF	9	Unmodified	_QTLGHFVPF_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.277099609375	2	523.276909	1044.53927	0.13646	7.1406E-05	0.54641	0.00028592	0.68287	0.00035733	523.2772494286799	12.9	0.25138	12.9	12.751	13.003	0					23	8	3	0	0	0	0.33276	1	272	272		3.9444	0.3479	1	66707	+		36253	14878	21349	21350	43796	43796					0.01877777651429824
QTLHVSRSF	9	Unmodified	_QTLHVSRSF_					0	0	0			REV__ENSG00000197343|ENST00000252713|ZNF655	REV__ENSG00000197343|ENST00000252713|ZNF655	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.8067626953125	2	537.788173	1073.56179	0.28928	0.00015557	0.2188	0.00011767	0.50808	0.00027324	537.7883557294412	31.374	1.4934	31.374	31.062	32.556	0					99	53	3	0	0	0	0.25112	1	6181	6181		16.149	1.3108	1	8334000	+		36254	18729	21350	21351	43797	43797					0.027953770490512397
QTLHVSRSF	9	Unmodified	_QTLHVSRSF_					0	0	0			REV__ENSG00000197343|ENST00000252713|ZNF655	REV__ENSG00000197343|ENST00000252713|ZNF655	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.8067016601562	2	537.788173	1073.56179	0.16558	8.9044E-05	0.25167	0.00013535	0.41725	0.00022439	537.7884192186742	31.364	1.3596	31.406	31.106	32.465	0.042366					96	48	4	0	0	0	0.12642	1	6149	6149		34.402	7.5181	1	8454300	+		36255	18729	21350	21351	43798	43798					0.027953770490512397
QTLHVSRSF	9	Unmodified	_QTLHVSRSF_					0	0	0			REV__ENSG00000197343|ENST00000252713|ZNF655	REV__ENSG00000197343|ENST00000252713|ZNF655	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.8065185546875	2	537.788173	1073.56179	0.45917	0.00024694	0.017887	9.6192E-06	0.47706	0.00025656	537.7882922391397	31.278	1.523	31.319	31.042	32.565	0.040991					108	54	4	0	0	0	0.21447	1	6150	6150		21.537	3.402	1	8560900	+		36256	18729	21350	21351	43799	43799					0.027953770490512397
QTLKDLLL	8	Unmodified	_QTLKDLLL_					0	0	0		ENSG00000177191|ENST00000691102|B3GNT8	ENSG00000177191|ENST00000691102|B3GNT8	ENSG00000177191|ENST00000691102|B3GNT8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.20574951171875	2	472.294768	942.574983	0.089742	4.2385E-05	0.52307	0.00024704	0.61281	0.00028943	472.29478443619035	76.607	0.38334	76.607	76.474	76.858	0					21	13	2	0	0	0	0.34117	1	19733	19733		13.906	0	1	160460			36257	6970	21351	21352	43800	43800					0.10139815108436778
QTLKDLLL	8	Unmodified	_QTLKDLLL_					0	0	0		ENSG00000177191|ENST00000691102|B3GNT8	ENSG00000177191|ENST00000691102|B3GNT8	ENSG00000177191|ENST00000691102|B3GNT8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.205810546875	2	472.294768	942.574983	-0.0077966	-3.6823E-06	0.56289	0.00026585	0.55509	0.00026217	472.29488541625045	76.597	0.4079	76.65	76.423	76.831	0.053413					23	14	2	0	0	0	0.34117	1	19710	19710		13.906	0	1	149270			36258	6970	21351	21352	43801	43801					0.10139815108436778
QTLKDLLL	8	Unmodified	_QTLKDLLL_					0	0	0		ENSG00000177191|ENST00000691102|B3GNT8	ENSG00000177191|ENST00000691102|B3GNT8	ENSG00000177191|ENST00000691102|B3GNT8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2057800292969	2	472.294768	942.574983	0.38555	0.0001821	0.14316	6.7612E-05	0.52871	0.00024971	472.29470741416236	76.665	0.38116	76.633	76.422	76.804	-0.031487					26	13	3	0	0	0	0.33661	1	19734	19734		19.257	0	1	120970			36259	6970	21351	21352	43802	43802					0.10139815108436778
QTLQSQRQY	9	Unmodified	_QTLQSQRQY_					0	0	0		nc|ENSG00000168826|Q6ZSB9-4|ZBTB49;nc|ENSG00000168826|Q6ZSB9-3|ZBTB49;nc|ENSG00000168826|Q6ZSB9-5|ZBTB49;nc|ENSG00000168826|Q6ZSB9-2|ZBTB49;ENSG00000168826|ENST00000337872|ZBTB49	nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.2923583984375	2	576.293819	1150.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.19	1	114.19	113.69	114.69	0								0	0	0	0.25858	1	29634	29634		3.5965	1.098	1				36260	6304	21352	21353	43803	43803					0.003821543525418747
QTLQSQRQY	9	Unmodified	_QTLQSQRQY_					0	0	0		nc|ENSG00000168826|Q6ZSB9-4|ZBTB49;nc|ENSG00000168826|Q6ZSB9-3|ZBTB49;nc|ENSG00000168826|Q6ZSB9-5|ZBTB49;nc|ENSG00000168826|Q6ZSB9-2|ZBTB49;ENSG00000168826|ENST00000337872|ZBTB49	nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.2936401367188	2	576.293819	1150.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.67	1	111.66	111.16	112.16	-0.013939								0	0	0	0.25631	1	29050	29050		4.3292	0	1				36261	6304	21352	21353	43804	43804					0.003821543525418747
QTLQSQRQY	9	Unmodified	_QTLQSQRQY_					0	0	0		nc|ENSG00000168826|Q6ZSB9-4|ZBTB49;nc|ENSG00000168826|Q6ZSB9-3|ZBTB49;nc|ENSG00000168826|Q6ZSB9-5|ZBTB49;nc|ENSG00000168826|Q6ZSB9-2|ZBTB49;ENSG00000168826|ENST00000337872|ZBTB49	nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2932739257812	2	576.293819	1150.57309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.65	1	114.67	114.17	115.17	0.016708								0	0	0	0.25631	1	29811	29811		4.3292	0	1				36262	6304	21352	21353	43805	43805					0.003821543525418747
QTLRESRER	9	Unmodified	_QTLRESRER_					0	0	0		ENSG00000008311|ENST00000417368|AASS	ENSG00000008311|ENST00000417368|AASS	ENSG00000008311|ENST00000417368|AASS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.81884765625	2	587.817993	1173.62143	0.10569	6.2128E-05	0.4801	0.00028221	0.58579	0.00034434	587.8182753483517	29.861	0.25977	29.875	29.745	30.005	0.013474					11	8	2	0	0	0	0.3208	1	5387	5387		5.7319	1.7875	1	77811			36263	394	21353	21354	43806	43806					0.04156647992431317
QTLSLKQLFRK	11	Unmodified	_QTLSLKQLFRK_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.9330749511719	3	454.613633	1360.81907	0.25313	0.00011507	-0.78192	-0.00035547	-0.52879	-0.0002404	454.6132055266971	44.919	0.52032	44.988	44.711	45.232	0.068569					45	18	3	0	0	0	0.16009	1	10017	10017		34.79	19.252	1	639600			36264	2162	21354	21355	43807	43807					0.15309274202331835
QTLSLKQLFRK	11	Unmodified	_QTLSLKQLFRK_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.5991516113281	3	454.613633	1360.81907	0.32075	0.00014582	-0.74678	-0.00033949	-0.42603	-0.00019368	454.61320317453595	44.899	0.67131	44.974	44.723	45.394	0.075047					56	24	3	0	0	0	0.094126	1	10004	10004		40.714	31.962	1	616210			36265	2162	21354	21355	43808	43808					0.15309274202331835
QTLSLKQLFRK	11	Unmodified	_QTLSLKQLFRK_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	454.613633	1360.81907	0.24746	0.0001125	-0.97502	-0.00044326	-0.72756	-0.00033076	454.61313721973266	45.227	0.59167	45.227	44.909	45.501	0	0.16377	-0.00012413	NaN	40.714	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	594670			36266	2162	21354	21355							0.15309274202331835
QTNLILQTF	9	Unmodified	_QTNLILQTF_					0	0	0		ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3007202148438	2	539.300581	1076.58661	0.38264	0.00020636	-2.7831	-0.0015009	-2.4004	-0.0012946	539.3002621195368	73.372	1.1888	73.372	72.639	73.828	0					93	42	4	0	0	0	0.003317	1	18759	18759		99.755	0	1	482350			36267	2551	21355	21356	43809	43809					0.05138012131760661
QTNLILQTF	9	Unmodified	_QTNLILQTF_					0	0	0		ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.3005981445312	2	539.300581	1076.58661	0.34931	0.00018838	-2.6863	-0.0014487	-2.337	-0.0012604	539.3001346531812	73.316	1.3431	73.37	72.484	73.827	0.053833					117	48	3	0	0	0	0.015924	2	18721	18721;18771		70.332	0	1	419980			36268	2551	21355	21356	43810;43811	43810					0.05138012131760661
QTNLILQTF	9	Unmodified	_QTNLILQTF_					0	0	0		ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	ENSG00000114209|ENST00000392750|PDCD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.3007202148438	2	539.300581	1076.58661	0.54052	0.00029151	-3.0538	-0.0016469	-2.5133	-0.0013554	539.300118129057	73.4	1.0304	73.371	72.767	73.798	-0.029305					92	35	4	0	0	0	0.0027395	1	18762	18762		114.2	0	1	487400			36269	2551	21355	21356	43812	43812					0.05138012131760661
QTNPTYLAK	9	Unmodified	_QTNPTYLAK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.27734375	2	518.277106	1034.53966	0.061284	3.1762E-05	0.048991	2.5391E-05	0.11028	5.7153E-05	518.277131059931	25.819	0.65658	25.781	25.47	26.126	-0.038671					47	22	3	0	0	0	0.086462	1	4151	4151		40.239	22.093	1	517050			36270	4321	21356	21357	43813	43813					0.023771525806068894
QTNPTYLAK	9	Unmodified	_QTNPTYLAK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2769775390625	2	518.277106	1034.53966	0.11663	6.0449E-05	-0.069775	-3.6163E-05	0.046859	2.4286E-05	518.2770427823232	25.801	0.68419	25.779	25.552	26.236	-0.022238					49	24	3	0	0	0	0.14786	1	4167	4167		31.268	14.155	1	411650			36271	4321	21356	21357	43814	43814					0.023771525806068894
QTNPTYLAK	9	Unmodified	_QTNPTYLAK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	518.277106	1034.53966	0.21662	0.00011227	0.10422	5.4014E-05	0.32084	0.00016628	518.2770996472102	25.773	0.59695	25.773	25.445	26.042	0	-0.0045749	0.00010173	NaN	40.239	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399660			36272	4321	21356	21357							0.023771525806068894
QTPLIDIEKLI	11	Unmodified	_QTPLIDIEKLI_					0	0	0			REV__ENST00000473301.1_1_7:95224333-95225617:-|nuORF	REV__ENST00000473301.1_1_7:95224333-95225617:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8822021484375	2	641.884478	1281.7544	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.58	1	117.58	117.08	118.08	0								0	0	0	0.37382	1	30401	30401		2.9952	1.3426	1		+		36273	13336	21357	21358	43815	43815					0.12479654605704127
QTPQNAIFF	9	Unmodified	_QTPQNAIFF_					0	0	0		ENSG00000156076|ENST00000286574|WIF1	ENSG00000156076|ENST00000286574|WIF1	ENSG00000156076|ENST00000286574|WIF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.261474609375	2	533.271824	1064.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.247	1	88.247	87.747	88.747	0								0	0	0	0.24311	1	23303	23303		8.5933	2.2392	1				36274	5218	21358	21359	43816	43816					-0.0005883007381726202
QTPQNAIFF	9	Unmodified	_QTPQNAIFF_					0	0	0		ENSG00000156076|ENST00000286574|WIF1	ENSG00000156076|ENST00000286574|WIF1	ENSG00000156076|ENST00000286574|WIF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.759765625	2	533.271824	1064.5291	0.41371	0.00022062	2.1905	0.0011681	2.6042	0.0013887	533.7755632838821	88.052	0.24297	88.141	88.052	88.295	0.089203					18	12	2	0	0	0	0.24739	1	23262	23262		13.508	4.1604	1	141310			36275	5218	21358	21359	43817	43817					-0.0005883007381726202
QTPQNAIFF	9	Unmodified	_QTPQNAIFF_					0	0	0		ENSG00000156076|ENST00000286574|WIF1	ENSG00000156076|ENST00000286574|WIF1	ENSG00000156076|ENST00000286574|WIF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	533.271824	1064.5291	0.54387	0.00029003	-0.079622	-4.246E-05	0.46425	0.00024757	533.270183303274	88.544	0.055031	88.541	88.505	88.56	-0.0028381	0.2	-0.0021649	NaN	13.508	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28581			36276	5218	21358	21359							-0.0005883007381726202
QTPVSLHLDP	10	Unmodified	_QTPVSLHLDP_					0	0	0			REV__nc|ENSG00000102554|Q13887-4|KLF5	REV__nc|ENSG00000102554|Q13887-4|KLF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3037109375	2	553.795663	1105.57677	0.27557	0.00015261	-1.1132	-0.00061648	-0.83763	-0.00046387	554.2965826640988	40.01	0.40016	40.01	39.858	40.259	0					21	13	2	0	0	0	0.31143	1	8466	8466		17.113	0	1	118340	+		36277	14325	21359	21360	43818	43818					0.028208241263882883
QTQPPRVQL	9	Unmodified	_QTQPPRVQL_					0	0	0			REV__ENST00000264025.7_1_11:119532425-119532647:-|nuORF	REV__ENST00000264025.7_1_11:119532425-119532647:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.3197021484375	2	533.803823	1065.59309	0.41337	0.00022066	0.32425	0.00017308	0.73762	0.00039374	533.8039533072345	26.805	1.2314	26.805	26.469	27.7	0					140	42	5	0	0	0	0.23767	1	4611	4611		18.146	0	1	4908800	+		36278	19632	21360	21361	43819	43819					0.06291950083118536
QTQQTYSIE	9	Unmodified	_QTQQTYSIE_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103590092-103612100:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3014526367188	2	549.259111	1096.50367	0.41877	0.00023001	0.62815	0.00034501	1.0469	0.00057503	549.2591432774242	34.199	0.69064	34.199	33.865	34.556	0					36	24	2	0	0	0	0.2451	1	6822	6822		15.847	7.937	1	206750			36279	2249	21361	21362	43820	43820					-0.040723493869109006
QTQSIYIPR	9	Unmodified	_QTQSIYIPR_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3040161132812	2	553.303655	1104.59276	0.28549	0.00015796	0.20082	0.00011111	0.48631	0.00026908	553.3037641297988	39.457	1.1165	39.55	39.226	40.343	0.09267					110	39	5	0	0	0	1.0978E-16	4	8314	8267;8314;8358;8403		214.05	138.29	1	5811000			36280	2575	21362	21363	43821;43822;43823;43824	43822					0.04464530363247832
QTQSIYIPR	9	Unmodified	_QTQSIYIPR_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3040161132812	2	553.303655	1104.59276	0.32274	0.00017857	0.22105	0.00012231	0.54379	0.00030088	553.3037448377555	39.414	1.017	39.513	39.184	40.201	0.099403					96	36	4	0	0	0	1.0978E-16	3	8317	8268;8317;8361		214.05	128.41	1	5712200			36281	2575	21362	21363	43825;43826;43827	43826					0.04464530363247832
QTQYLLLI	8	Unmodified	_QTQYLLLI_					0	0	0		ENST00000426918.2_1_9:125719318-125748500:+|nuORF;ENST00000373647.8_1_9:125719318-125746770:+|nuORF	ENST00000426918.2_1_9:125719318-125748500:+|nuORF	ENST00000426918.2_1_9:125719318-125748500:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2953186035156	2	496.294768	990.574983	0.5734	0.00028458	-0.86683	-0.0004302	-0.29343	-0.00014563	496.2942070047468	78.92	0.57141	78.978	78.76	79.332	0.058151					46	25	2	0	0	0	0.28088	1	20452	20452		39.957	0	1	223800			36282	9874	21363	21364	43828	43828					0.07931815108440787
QTRSSYKQ	8	Unmodified	_QTRSSYKQ_					0	0	0			REV__ENST00000504778.5_1_5:54552318-54579000:-|nuORF	REV__ENST00000504778.5_1_5:54552318-54579000:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2691345214844	2	499.256705	996.498858	0.008396	4.1917E-06	0.42706	0.00021321	0.43546	0.00021741	499.25689936009536	14.361	0.39642	14.295	13.977	14.373	-0.066068					22	13	2	0	0	0	0.33441	1	722	722		26.884	1.4843	1	123330	+		36283	13689	21364	21365	43829	43829					0.0004681126099512767
QTRVNIDAQ	9	Unmodified	_QTRVNIDAQ_					0	0	0			REV__ENSG00000185722|ENST00000341657|ANKFY1	REV__ENSG00000185722|ENST00000341657|ANKFY1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7935180664062	2	522.775262	1043.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.453	1	15.453	14.953	15.953	0								0	0	0	0.18639	1	1031	1031		26.268	2.4784	1		+		36284	18403	21365	21366	43830	43830					0.01594482806740416
QTRVNIDAQ	9	Unmodified	_QTRVNIDAQ_					0	0	0			REV__ENSG00000185722|ENST00000341657|ANKFY1	REV__ENSG00000185722|ENST00000341657|ANKFY1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7933959960938	2	522.775262	1043.53597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.547	1	15.438	14.938	15.938	-0.10981								0	0	0	0.18639	1	1062	1062		26.268	2.4784	1		+		36285	18403	21365	21366	43831	43831					0.01594482806740416
QTSATFLRV	9	Unmodified	_QTSATFLRV_					0	0	0		ENST00000555787.1_1_14:90734518-90735894:+|nuORF;nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000434820.1_1_2:17566863-17567166:+|nuORF	ENST00000555787.1_1_14:90734518-90735894:+|nuORF	ENST00000555787.1_1_14:90734518-90735894:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.78533935546875	2	511.785099	1021.55564	0.68012	0.00034808	-0.14668	-7.5068E-05	0.53344	0.00027301	511.78495510012146	45.762	0.76413	45.762	45.291	46.055	0					38	27	2	0	0	0	0.058995	1	10261	10261		49.554	17.249	1	417090			36286	1629	21366	21367	43832	43832					0.04572858817505221
QTSATFLRV	9	Unmodified	_QTSATFLRV_					0	0	0		ENST00000555787.1_1_14:90734518-90735894:+|nuORF;nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000434820.1_1_2:17566863-17567166:+|nuORF	ENST00000555787.1_1_14:90734518-90735894:+|nuORF	ENST00000555787.1_1_14:90734518-90735894:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	511.785099	1021.55564	0.40331	0.00020641	0.09898	5.0656E-05	0.50229	0.00025706	511.7850277706465	45.576	0.46344	45.641	45.408	45.872	0.065048	-0.049581	-8.0442E-05	NaN	49.554	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360290			36287	1629	21366	21367							0.04572858817505221
QTSGSLVSK	9	Unmodified	_QTSGSLVSK_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP;CDKN2AIP|p.I471Mfs*4|1|0.17|ENSG00000168564|chr4:183447096-183447096|T/-|frameshift_variant	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7480773925781	2	453.748182	905.481811	-0.061207	-2.7772E-05	-0.20609	-9.3512E-05	-0.26729	-0.00012128	453.7480578095234	15.678	0.87743	15.678	15.471	16.349	0					71	30	3	0	0	0	0.16685	1	1087	1087		28.495	8.0409	1	332890			36288	6284	21367	21368	43833	43833					0.025288906551850232
QTSGSLVSK	9	Unmodified	_QTSGSLVSK_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP;CDKN2AIP|p.I471Mfs*4|1|0.17|ENSG00000168564|chr4:183447096-183447096|T/-|frameshift_variant	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.748046875	2	453.748182	905.481811	-0.032959	-1.4955E-05	-0.037345	-1.6945E-05	-0.070304	-3.19E-05	453.7480595209603	15.802	0.70651	15.692	15.464	16.171	-0.10981					60	23	3	0	0	0	0.048637	2	1164	1117;1164		53.404	17.277	1	390040			36289	6284	21367	21368	43834;43835	43835					0.025288906551850232
QTSGSLVSK	9	Unmodified	_QTSGSLVSK_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP;CDKN2AIP|p.I471Mfs*4|1|0.17|ENSG00000168564|chr4:183447096-183447096|T/-|frameshift_variant	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.7480163574219	2	453.748182	905.481811	-0.028234	-1.2811E-05	-0.00013323	-6.0454E-08	-0.028368	-1.2872E-05	453.74813220441797	15.767	1.1583	15.702	15.457	16.616	-0.064414					85	39	3	0	0	0	0.12279	1	1114	1114		34.932	8.0484	1	365390			36290	6284	21367	21368	43836	43836					0.025288906551850232
QTSLFRRR	8	Unmodified	_QTSLFRRR_					0	0	0		ENST00000535009.5_1_11:68816453-68846494:+|nuORF;ENST00000442692.2_1_11:68822646-68853210:+|nuORF;ENSG00000162341|ENST00000294309|TPCN2	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3128051757812	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.55	1	107.55	107.05	108.05	0								0	0	0	0.37724	1	28330	28330		2.3027	0.24298	1				36291	5559	21368	21369	43837	43837					0.07586191897121353
QTSRKETFL	9	Unmodified	_QTSRKETFL_					0	0	0		nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENSG00000119778|ENST00000238789|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3009033203125	2	555.301113	1108.58767	0.018141	1.0074E-05	-1.214	-0.00067416	-1.1959	-0.00066409	555.2998241793639	12.649	0.46439	12.55	12.321	12.785	-0.099291					31	15	4	0	0	0	0.34923	1	194	194		1.4819	0.28856	1	65652			36292	2907	21369	21370	43838	43838					0.037722265006550515
QTSVEGPLLQA	11	Unmodified	_QTSVEGPLLQA_					0	0	0		ENST00000258796.11_1_7:2703086-2703176:+|nuORF	ENST00000258796.11_1_7:2703086-2703176:+|nuORF	ENST00000258796.11_1_7:2703086-2703176:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.79541015625	2	571.806228	1141.5979	0.049721	2.8431E-05	0.11288	6.4545E-05	0.1626	9.2976E-05	571.8059660615469	18.716	0.64493	18.716	18.451	19.095	0					44	22	3	0	0	0	0.33073	1	1998	1998		7.1017	0	1	59945			36293	8948	21370	21371	43839	43839					0.032767894352673466
QTSVEGPLLQA	11	Unmodified	_QTSVEGPLLQA_					0	0	0		ENST00000258796.11_1_7:2703086-2703176:+|nuORF	ENST00000258796.11_1_7:2703086-2703176:+|nuORF	ENST00000258796.11_1_7:2703086-2703176:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	571.806228	1141.5979	-0.031529	-1.8029E-05	0.28427	0.00016255	0.25274	0.00014452	571.8060046769695	18.926	0.66066	18.867	18.509	19.17	-0.058174	0.056114	8.9557E-05	NaN	7.1017	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76038			36294	8948	21370	21371							0.032767894352673466
QTTAVLTPN	9	Unmodified	_QTTAVLTPN_					0	0	0			REV__ENSG00000171195|ENST00000304887|MUC7	REV__ENSG00000171195|ENST00000304887|MUC7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7747802734375	2	472.756007	943.497461	-0.096718	-4.5724E-05	0.28676	0.00013557	0.19005	8.9845E-05	472.75631158727583	14.554	0.29877	14.488	14.289	14.588	-0.066068					14	10	2	0	0	0	0.24848	1	776	776		9.3831	0	1	32019	+		36295	17627	21371	21372	43840	43840					0.023451771722307058
QTVKVKRP	8	Unmodified	_QTVKVKRP_					0	0	0			REV__ENST00000458644.6_1_11:72700129-72852922:-|nuORF	REV__ENST00000458644.6_1_11:72700129-72852922:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.24029541015625	2	478.306001	954.597449	0.1414	6.7631E-05	-0.94935	-0.00045408	-0.80796	-0.00038645	478.30572886832584	17.406	0.25973	17.406	17.217	17.477	0					16	9	2	0	0	0	0.34337	1	1590	1590		5.2307	0	1	22441	+		36296	15862	21372	21373	43841	43841					0.11833459296701676
QTWCPKVRTP	10	Unmodified	_QTWCPKVRTP_					0	0	0		ENST00000600988.1_1_19:36250275-36250395:+|nuORF	ENST00000600988.1_1_19:36250275-36250395:+|nuORF	ENST00000600988.1_1_19:36250275-36250395:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.8974609375	3	405.881614	1214.62301	-0.26658	-0.0001082	-2.7348	-0.00111	-3.0013	-0.0012182	406.21491715845895	18.95	0.15691	18.832	18.761	18.918	-0.11739					6	5	2	0	0	0	0.32101	1	2092	2092		1.2148	0.25256	1	15719			36297	12254	21373	21374	43842	43842					0.024285657568270835
QTYERLTRKP	10	Unmodified	_QTYERLTRKP_					0	0	0			REV__ENST00000508725.5_1_4:165032760-165155987:-|nuORF	REV__ENST00000508725.5_1_4:165032760-165155987:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.8621215820312	2	646.359493	1290.70443	0.17175	0.00011101	-0.29584	-0.00019122	-0.12409	-8.0207E-05	646.3595955395996	103.61	0.60604	103.61	103.53	104.13	0.0082626					252	83	5	0	0	0	0.39935	1	27593	27593		3.5965	0.31518	1	7080200	+		36298	21776	21374	21375	43843	43843					0.0707096472037847
QTYKVSSINEQ	11	Unmodified	_QTYKVSSINEQ_					0	0	0			REV__ENSG00000078114|ENST00000377122|NEBL	REV__ENSG00000078114|ENST00000377122|NEBL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.8850402832031	3	432.885858	1295.63574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.618	1	17.618	17.118	18.118	0								0	0	0	0.3772	1	1684	1684		2.2527	0.16876	1		+		36299	13853	21375	21376	43844	43844					-0.0002474436994361895
QTYKVSSINEQ	11	Unmodified	_QTYKVSSINEQ_					0	0	0			REV__ENSG00000078114|ENST00000377122|NEBL	REV__ENSG00000078114|ENST00000377122|NEBL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.88507080078125	3	432.885858	1295.63574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.639	1	17.578	17.078	18.078	-0.060429								0	0	0	0.36872	1	1690	1690		4.1166	0.27072	1		+		36300	13853	21375	21376	43845	43845					-0.0002474436994361895
QTYLRVAFT	9	Unmodified	_QTYLRVAFT_					0	0	0		ENST00000427117.5_1_19:37407265-37407370:+|nuORF	ENST00000427117.5_1_19:37407265-37407370:+|nuORF	ENST00000427117.5_1_19:37407265-37407370:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2823486328125	2	549.800749	1097.58694	0.75684	0.00041611	-1.0201	-0.00056086	-0.26327	-0.00014475	549.8000073947039	58.512	0.91185	58.498	58.036	58.947	-0.014267					46	32	2	0	0	0	0.23784	1	14220	14220		9.3831	0	1	250840			36301	10428	21376	21377	43846	43846					0.04205431851596586
QTYSIKQPF	9	Unmodified	_QTYSIKQPF_					0	0	0			REV__nc|ENSG00000028116|Q86Y07-3|VRK2	REV__nc|ENSG00000028116|Q86Y07-3|VRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2824096679688	2	556.292756	1110.57096	0.18256	0.00010156	0.72965	0.0004059	0.91221	0.00050746	556.2941307628618	39.369	0.78009	39.462	39.137	39.917	0.09267					65	27	3	0	0	0	0.07432	2	8330	8239;8330		43.858	3.4097	1	865900	+		36302	13487	21377	21378	43847;43848	43848					0.02009725614720992
QTYSIKQPF	9	Unmodified	_QTYSIKQPF_					0	0	0			REV__nc|ENSG00000028116|Q86Y07-3|VRK2	REV__nc|ENSG00000028116|Q86Y07-3|VRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.282470703125	2	556.292756	1110.57096	0.29358	0.00016332	0.33512	0.00018643	0.6287	0.00034974	556.2939530130842	39.329	0.74047	39.429	39.128	39.868	0.099403					68	26	4	0	0	0	0.20626	1	8363	8363		22.736	1.1993	1	1032900	+		36303	13487	21377	21378	43849	43849					0.02009725614720992
QTYSTEPNNLK	11	Unmodified	_QTYSTEPNNLK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28;nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.817626953125	2	647.817324	1293.62009	0.29478	0.00019096	0.61299	0.00039711	0.90777	0.00058807	647.8179345035528	27.304	0.61734	27.304	27.146	27.763	0					39	20	3	0	0	0	0.27043	1	4620	4620		24.882	11.267	1	188570			36304	2165	21378	21379	43850	43850					-0.014970308869806104
QTYSTEPNNLK	11	Unmodified	_QTYSTEPNNLK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28;nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.8173217773438	2	647.817324	1293.62009	0.16946	0.00010978	0.6572	0.00042574	0.82666	0.00053552	647.8178574414944	27.326	0.54078	27.304	27.1	27.641	-0.021412					36	18	3	0	0	0	0.28246	1	4631	4631		23.801	14.257	1	207570			36305	2165	21378	21379	43851	43851					-0.014970308869806104
QTYSTEPNNLK	11	Unmodified	_QTYSTEPNNLK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28;nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.817626953125	2	647.817324	1293.62009	0.15781	0.00010223	0.90305	0.00058501	1.0609	0.00068724	647.8182059427338	27.329	0.6018	27.318	27.101	27.703	-0.01156					37	20	3	0	0	0	0.049742	1	4632	4632		53.317	26.093	1	172440			36306	2165	21378	21379	43852	43852					-0.014970308869806104
QTYVGITEK	9	Unmodified	_QTYVGITEK_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7772216796875	2	519.776939	1037.53933	0.25504	0.00013257	0.25681	0.00013348	0.51185	0.00026605	519.7770796528175	31.164	0.69441	31.164	30.889	31.583	0					70	24	4	0	0	0	0.0044119	2	5819	5768;5819		91.085	58.299	1	2350200			36307	4558	21379	21380	43853;43854	43854					0.022057328607616
QTYVGITEK	9	Unmodified	_QTYVGITEK_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7771606445312	2	519.776939	1037.53933	0.10379	5.3946E-05	0.51898	0.00026975	0.62276	0.0003237	519.7771850153589	31.129	0.68916	31.158	30.897	31.586	0.028296					69	24	4	0	0	0	0.07848	3	5809	5760;5809;5868		42.312	24.166	1	2671900			36308	4558	21379	21380	43855;43856;43857	43856					0.022057328607616
QTYVGITEK	9	Unmodified	_QTYVGITEK_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.77734375	2	519.776939	1037.53933	0.26745	0.00013902	0.28065	0.00014588	0.54811	0.00028489	519.7770770475471	31.081	0.70726	31.113	30.871	31.578	0.032059					66	25	4	0	0	0	0.016571	2	5796	5747;5796		69.338	38.07	1	2520000			36309	4558	21379	21380	43858;43859	43859					0.022057328607616
QVAAVVTTK	9	Unmodified	_QVAAVVTTK_					0	0	0		nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4;nc|ENSG00000168679|O15374-3|SLC16A4;SLC16A4|p.D170Cfs*16|1|0.27|ENSG00000168679|chr1:110380998-110381001|ATCT/-|frameshift_variant	nc|ENSG00000168679|O15374-4|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.250244140625	2	458.776742	915.538931	0.12571	5.7672E-05	-0.72141	-0.00033096	-0.5957	-0.00027329	458.7762522102761	23.22	0.55073	23.175	22.977	23.528	-0.044867					36	19	2	0	0	0	0.24429	1	3388	3388		9.544	3.8121	1	126450			36310	6293	21380	21381	43860	43860					0.07778357931556457
QVAKPAPRF	9	Unmodified	_QVAKPAPRF_					0	0	0			REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	REV__nc|ENSG00000154358|Q5VST9-3|OBSCN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.3094787597656	2	507.298176	1012.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.655	1	92.655	92.155	93.155	0.00046539								0	0	0	0.25631	1	24646	24646		4.3292	0	1		+		36311	16663	21381	21382	43861	43861					0.07601172779652643
QVALIVRLPF	10	Unmodified	_QVALIVRLPF_					0	0	0		ENSG00000274102|ENST00000614722|OR4M2;ENSG00000182974|ENST00000332663|OR4M2B;ENSG00000176299|ENST00000641200|OR4M1	ENSG00000274102|ENST00000614722|OR4M2	ENSG00000274102|ENST00000614722|OR4M2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.803466796875	2	578.366059	1154.71756	0.58645	0.00033919	-0.75971	-0.00043939	-0.17325	-0.0001002	578.8671228919783	55.771	0.45563	55.771	55.507	55.963	0					26	15	2	0	0	0	0.31267	1	13319	13319		10.074	0	1	534250			36312	6918	21382	21383	43862	43862					0.14639447570448283
QVALIVRLPF	10	Unmodified	_QVALIVRLPF_					0	0	0		ENSG00000274102|ENST00000614722|OR4M2;ENSG00000182974|ENST00000332663|OR4M2B;ENSG00000176299|ENST00000641200|OR4M1	ENSG00000274102|ENST00000614722|OR4M2	ENSG00000274102|ENST00000614722|OR4M2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.83203125	2	578.366059	1154.71756	0.6426	0.00037166	-0.65573	-0.00037925	-0.013127	-7.5922E-06	578.3654882344323	55.724	0.48533	55.795	55.535	56.02	0.070885					28	17	2	0	0	0	0.31847	1	13353	13353		6.7232	4.8789	1	417670			36313	6918	21382	21383	43863	43863					0.14639447570448283
QVALIVRLPF	10	Unmodified	_QVALIVRLPF_					0	0	0		ENSG00000274102|ENST00000614722|OR4M2;ENSG00000182974|ENST00000332663|OR4M2B;ENSG00000176299|ENST00000641200|OR4M1	ENSG00000274102|ENST00000614722|OR4M2	ENSG00000274102|ENST00000614722|OR4M2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.832275390625	2	578.366059	1154.71756	0.5918	0.00034228	-0.91975	-0.00053195	-0.32794	-0.00018967	578.3652797528098	55.881	0.59361	55.862	55.565	56.159	-0.019081					37	21	3	0	0	0	0.31267	1	13388	13388		10.074	3.3508	1	367160			36314	6918	21382	21383	43864	43864					0.14639447570448283
QVAPQSWISPL	11	Unmodified	_QVAPQSWISPL_					0	0	0		ENST00000263379.3_1_19:14163022-14163190:+|nuORF	ENST00000263379.3_1_19:14163022-14163190:+|nuORF	ENST00000263379.3_1_19:14163022-14163190:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2242126464844	3	409.224034	1224.65027	0.20128	8.2368E-05	0.12204	4.994E-05	0.32332	0.00013231	409.2239793980103	47.93	1.0039	47.93	47.578	48.582	0					96	35	3	0	0	0	0.30789	1	10882	10882		9.7643	3.1408	1	9463500			36315	9007	21383	21384	43865	43865					0.04693372568840459
QVAQTQGRYVK	11	Unmodified	_QVAQTQGRYVK_					0	0	0		nc|ENSG00000197558|A2VEC9-2|SSPOP	nc|ENSG00000197558|A2VEC9-2|SSPOP	nc|ENSG00000197558|A2VEC9-2|SSPOP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.23529052734375	3	426.570204	1276.68878	-0.024141	-1.0298E-05	-1.3673	-0.00058327	-1.3915	-0.00059357	426.56962934501104	20.383	0.44283	20.383	20.207	20.65	0					29	15	3	0	0	0	0.33287	1	2484	2484		2.8433	0.4085	1	67523			36316	12899	21384	21385	43866	43866					0.061506782033802665
QVDRVMAAF	9	Unmodified	_QVDRVMAAF_					0	0	0		ENSG00000178199|ENST00000409806|ZC3H12D	ENSG00000178199|ENST00000409806|ZC3H12D	ENSG00000178199|ENST00000409806|ZC3H12D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.278564453125	2	518.765852	1035.51715	0.29732	0.00015424	1.6288	0.00084495	1.9261	0.00099919	519.2664784887892	26.66	0.17285	26.66	26.528	26.701	0					7	5	2	0	0	0	0.22596	1	4397	4397		21.747	0	1	35876			36317	7042	21385	21386	43867	43867					0.0008122991134769109
QVDWAETDGGI	11	Unmodified	_QVDWAETDGGI_					0	0	0			REV__ENSG00000128408|ENST00000614167|RIBC2	REV__ENSG00000128408|ENST00000614167|RIBC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.2854614257812	2	595.769842	1189.52513	0.66389	0.00039553	0.93374	0.00055629	1.5976	0.00095182	595.7704280664523	63.942	0.46347	63.942	63.722	64.185	0					30	16	3	0	0	0	0.31791	1	15900	15900		20.415	20.415	1	266830	+		36318	15369	21386	21387	43868	43868					-0.06204964358175857
QVDWAETDGGI	11	Unmodified	_QVDWAETDGGI_					0	0	0			REV__ENSG00000128408|ENST00000614167|RIBC2	REV__ENSG00000128408|ENST00000614167|RIBC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.2855834960938	2	595.769842	1189.52513	0.62097	0.00036995	0.86897	0.0005177	1.4899	0.00088766	595.7703105603434	63.893	0.48501	63.883	63.718	64.203	-0.0095329					38	17	3	0	0	0	0.2973	1	15895	15895		15.248	0.8431	1	308860	+		36319	15369	21386	21387	43869	43869					-0.06204964358175857
QVEEIFNLK	9	Unmodified	_QVEEIFNLK_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.305908203125	2	560.305864	1118.59717	0.43909	0.00024602	-0.17038	-9.5464E-05	0.26871	0.00015056	560.3057140476616	53.423	1.1995	53.423	53.148	54.348	0					128	44	4	0	0	0	2.1822000000000003E-19	3	12627	12580;12627;12677		226.55	26.802	1	5679400			36320	8667	21387	21388	43870;43871;43872	43871					0.04261994786179457
QVEEIFNLK	9	Unmodified	_QVEEIFNLK_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.305908203125	2	560.305864	1118.59717	0.33829	0.00018955	-0.10868	-6.0893E-05	0.22961	0.00012865	560.3058007495621	53.418	1.1259	53.475	53.167	54.293	0.056259					128	42	4	0	0	0	1.2902E-16	2	12573	12573;12619		211.85	26.805	1	6520600			36321	8667	21387	21388	43873;43874	43873					0.04261994786179457
QVEEIFNLK	9	Unmodified	_QVEEIFNLK_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.3058471679688	2	560.305864	1118.59717	0.35588	0.0001994	-0.18372	-0.00010294	0.17216	9.6463E-05	560.3057388039691	53.623	1.337	53.613	53.192	54.529	-0.0096054					130	48	4	0	0	0	1.2902E-16	4	12666	12615;12666;12716;12768		211.85	26.805	1	5931800			36322	8667	21387	21388	43875;43876;43877;43878	43876					0.04261994786179457
QVEEWRAQNA	10	Unmodified	_QVEEWRAQNA_					0	0	0		ENST00000544490.5_1_11:72532712-72533589:+|nuORF;nc|ENSG00000168010|Q8NAA4-3|ATG16L2;ENST00000439504.6_1_11:72525490-72534007:+|nuORF;nc|ENSG00000168010|Q8NAA4-2|ATG16L2;ENSG00000168010|ENST00000321297|ATG16L2	ENST00000544490.5_1_11:72532712-72533589:+|nuORF	ENST00000544490.5_1_11:72532712-72533589:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.23602294921875	3	410.866909	1229.5789	-0.3987	-0.00016381	2.5019	0.0010279	2.1032	0.00086413	410.86846014396383	12.723	0.23305	12.723	12.641	12.874	0					11	7	2	0	0	0	0.32162	1	239	239		0.77653	0.078866	1	7806.9			36323	6234	21388	21389	43879	43879					-0.026707471357894974
QVEKQLVKN	9	Unmodified	_QVEKQLVKN_					0	0	0			REV__ENSG00000135338|ENST00000369846|LCA5	REV__ENSG00000135338|ENST00000369846|LCA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7584228515625	2	543.319306	1084.62406	0.3497	0.00019	0.18944	0.00010293	0.53915	0.00029293	543.3194093115802	31.04	0.63949	31.04	30.81	31.45	0					44	22	3	0	0	0	0.22061	1	5758	5758		24.021	2.4836	1	370170	+		36324	15735	21389	21390	43880	43880					0.08513103397399391
QVEKQLVKN	9	Unmodified	_QVEKQLVKN_					0	0	0			REV__ENSG00000135338|ENST00000369846|LCA5	REV__ENSG00000135338|ENST00000369846|LCA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.7583618164062	2	543.319306	1084.62406	0.48198	0.00026187	0.066848	3.632E-05	0.54883	0.00029819	543.3192576496983	31.042	0.7093	31.069	30.784	31.493	0.027157					48	22	3	0	0	0	0.22061	1	5753	5753		18.146	0	1	374820	+		36325	15735	21389	21390	43881	43881					0.08513103397399391
QVEMPRFEV	9	Unmodified	_QVEMPRFEV_					0	0	0			REV__ENSG00000001084|ENST00000650454|GCLC	REV__ENSG00000001084|ENST00000650454|GCLC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2794189453125	2	567.784241	1133.55393	0.15546	8.8269E-05	-1.1538	-0.0006551	-0.99833	-0.00056683	567.7812486726838	111.44	0.096359	111.43	111.37	111.47	-0.013939					20	13	2	0	0	0	0.25988	1	28991	28991		0.40072	0	1	113290	+		36326	13313	21390	21391	43882	43882					-0.007505182627483009
QVEPLHPNREQ	11	Unmodified	_QVEPLHPNREQ_					0	0	0			REV__ENST00000380995.5_1_22:47569631-47570030:+|nuORF	REV__ENST00000380995.5_1_22:47569631-47570030:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7587890625	3	449.56523	1345.67386	0.53603	0.00024098	1.9018	0.00085497	2.4378	0.001096	449.5660338356089	37.086	0.47001	37.086	36.815	37.285	0					36	16	3	0	0	0	0.33122	1	7638	7638		7.0371	1.9896	1	167760	+		36327	20558	21391	21392	43883	43883					0.014851863353669614
QVEQFVSLL	9	Unmodified	_QVEQFVSLL_					0	0	0			REV__ENST00000583334.5_3_17:30666835-30668280:-|nuORF	REV__ENST00000583334.5_3_17:30666835-30668280:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2838745117188	2	531.795132	1061.57571	0.36325	0.00019318	1.4657	0.00077943	1.8289	0.00097261	532.2969904826391	49.378	0.66415	49.41	49.149	49.813	0.032043					58	23	3	0	0	0	0.24848	1	11374	11374		9.3831	0	1	762920	+		36328	22497	21392	21393	43884	43884					0.04738609757487211
QVFCEAIGGAS	11	Unmodified	_QVFCEAIGGAS_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.776123046875	2	541.252774	1080.491	0.3151	0.00017055	-3.291	-0.0017812	-2.9759	-0.0016107	541.2511725329654	18.455	0.65281	18.455	18.299	18.952	0					29	22	2	0	0	0	0.3327	1	1927	1927		2.7352	0.67545	1	49196	+		36329	14053	21393	21394	43885	43885					-0.04603084050813777
QVFCEAIGGAS	11	Unmodified	_QVFCEAIGGAS_					0	0	0			REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	REV__nc|ENSG00000090924|Q9H7P9-2|PLEKHG2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.252774	1080.491	0.2029	0.00010982	-3.5023	-0.0018956	-3.2994	-0.0017858	541.2506959101154	18.539	0.58911	18.481	18.199	18.788	-0.058174	0.026979	0.00025965	NaN	2.7352	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43916	+		36330	14053	21393	21394							-0.04603084050813777
QVFKLGLAK	9	Unmodified	_QVFKLGLAK_					0	0	0		ENSG00000170889|ENST00000302907|RPS9;ENST00000498085.1_1_19:50222822-50223059:-|nuORF	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.3188171386719	2	502.318577	1002.6226	-0.020924	-1.051E-05	1.137	0.00057113	1.1161	0.00056061	502.3190138561066	39.221	0.58114	39.221	38.958	39.54	0					32	20	2	0	0	0	0.16283	1	8254	8254		29.082	2.1979	1	434470			36331	6489	21394	21395	43886	43886					0.12139514099260396
QVFKLGLAK	9	Unmodified	_QVFKLGLAK_					0	0	0		ENSG00000170889|ENST00000302907|RPS9;ENST00000498085.1_1_19:50222822-50223059:-|nuORF	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.31878662109375	2	502.318577	1002.6226	0.16013	8.0438E-05	0.82159	0.0004127	0.98173	0.00049314	502.31885130565524	39.095	0.52056	39.187	39.027	39.548	0.09267					35	18	3	0	0	0	0.11461	1	8242	8242		36.127	5.4905	1	470450			36332	6489	21394	21395	43887	43887					0.12139514099260396
QVFKLGLAK	9	Unmodified	_QVFKLGLAK_					0	0	0		ENSG00000170889|ENST00000302907|RPS9;ENST00000498085.1_1_19:50222822-50223059:-|nuORF	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.3186340332031	2	502.318577	1002.6226	0.45093	0.00022651	0.17836	8.9594E-05	0.62929	0.0003161	502.3186367690507	39.087	0.61164	39.186	38.953	39.565	0.099407					38	21	3	0	0	0	0.11461	1	8194	8194		36.127	5.4905	1	454060			36333	6489	21394	21395	43888	43888					0.12139514099260396
QVFLKPWIF	9	Unmodified	_QVFLKPWIF_					0	0	0		nc|ENSG00000167920|Q8N816|KRT10-AS1;nc|ENSG00000167920|Q8N816-2|KRT10-AS1	nc|ENSG00000167920|Q8N816|KRT10-AS1	nc|ENSG00000167920|Q8N816|KRT10-AS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3426513671875	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.52	1	117.55	117.05	118.05	0.023476								0	0	0	0.2672	1	30458	30458		0.52476	0	1				36334	12824	21395	21396	43889	43889					0.08828373650385402
QVFLKPWIF	9	Unmodified	_QVFLKPWIF_					0	0	0		nc|ENSG00000167920|Q8N816|KRT10-AS1;nc|ENSG00000167920|Q8N816-2|KRT10-AS1	nc|ENSG00000167920|Q8N816|KRT10-AS1	nc|ENSG00000167920|Q8N816|KRT10-AS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3442993164062	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.27	1	118.3	117.8	118.8	0.026253								0	0	0	0.2672	1	30628	30628		0.52476	0	1				36335	12824	21395	21396	43890	43890					0.08828373650385402
QVFNNFYF	8	Unmodified	_QVFNNFYF_					0	0	0		ENST00000261942.6_1_5:175934391-175934511:+|nuORF	ENST00000261942.6_1_5:175934391-175934511:+|nuORF	ENST00000261942.6_1_5:175934391-175934511:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8004150390625	2	539.753267	1077.49198	0.6204	0.00033486	-2.2129	-0.0011944	-1.5925	-0.00085955	539.751279703223	64.351	0.61417	64.443	64.234	64.848	0.09288					27	22	2	0	0	0	0.34218	1	15928	15928		5.2307	0.47466	1	193780			36336	8979	21396	21397	43891	43891					-0.04366501619574592
QVFTLPPPF	9	Unmodified	_QVFTLPPPF_					0	0	0		ENSG00000116996|ENST00000366570|ZP4	ENSG00000116996|ENST00000366570|ZP4	ENSG00000116996|ENST00000366570|ZP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7573852539062	2	523.289485	1044.56442	0.42403	0.00022189	-0.25755	-0.00013477	0.16648	8.7118E-05	523.2893230684028	69.938	0.70303	69.938	69.703	70.406	0					43	25	3	0	0	0	0.24311	1	17770	17770		16.942	2.104	1	250250			36337	2768	21397	21398	43892	43892					0.043918324539845344
QVFTLPPPF	9	Unmodified	_QVFTLPPPF_					0	0	0		ENSG00000116996|ENST00000366570|ZP4	ENSG00000116996|ENST00000366570|ZP4	ENSG00000116996|ENST00000366570|ZP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7572021484375	2	523.289485	1044.56442	0.43544	0.00022786	-0.27774	-0.00014534	0.15771	8.2526E-05	523.289310060844	69.941	0.51613	69.919	69.701	70.217	-0.022087					37	18	3	0	0	0	0.21905	1	17769	17769		23.148	6.2061	1	207700			36338	2768	21397	21398	43893	43893					0.043918324539845344
QVFTRAAI	8	Unmodified	_QVFTRAAI_					0	0	0			REV__ENSG00000183098|ENST00000377047|GPC6	REV__ENSG00000183098|ENST00000377047|GPC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7438659667969	2	453.263802	904.513051	-0.23515	-0.00010658	-1.2168	-0.00055154	-1.452	-0.00065812	453.2630965955056	27.968	0.31052	27.969	27.82	28.13	0.00046921					17	10	2	0	0	0	0.34131	1	4861	4861		12.532	0.89125	1	70176	+		36339	18240	21398	21399	43894	43894					0.05697508479943281
QVFYLRRFFKA	11	Unmodified	_QVFYLRRFFKA_					0	0	0		ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENSG00000170348|ENST00000303575|TMED10	ENST00000555873.1_1_14:75601590-75605782:-|nuORF	ENST00000555873.1_1_14:75601590-75605782:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2727355957031	3	492.282106	1473.82449	0.31893	0.000157	3.4107	0.001679	3.7296	0.001836	492.28336491543246	16.57	0.3229	16.507	16.351	16.674	-0.062532					21	10	3	0	0	0	0.47545	1	1399	1399		1.3296	0.82369	1	43636			36340	6446	21399	21400	43895	43895					0.10652997784814033
QVGAVKQQLI	10	Unmodified	_QVGAVKQQLI_					0	0	0			REV__ENSG00000166329|ENST00000299415|CCDC182	REV__ENSG00000166329|ENST00000299415|CCDC182	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7584228515625	2	542.329673	1082.64479	0.37332	0.00020246	-1.5815	-0.00085767	-1.2081	-0.00065521	542.3294006716912	31.037	0.45083	31.037	30.781	31.231	0					18	15	2	0	0	0	0.31267	1	5758	5758		14.838	2.3067	1	77627	+		36341	17308	21400	21401	43896	43896					0.106776937770519
QVGGGCSRS	9	Unmodified	_QVGGGCSRS_					0	0	0			REV__ENSG00000154736|ENST00000284987|ADAMTS5;REV__ENSG00000151388|ENST00000504830|ADAMTS12	REV__ENSG00000151388|ENST00000504830|ADAMTS12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2459411621094	2	425.695426	849.3763	0.29083	0.00012381	3.8442	0.0016364	4.135	0.0017602	425.69776945385786	77.624	0.16725	77.68	77.571	77.738	0.055412					7	5	2	0	0	0	0.25988	1	20043	20043		0.40072	0	1	31989	+		36342	16675;16538	21401	21402	43897	43897					-0.054413487420674755
QVGVPLFP	8	Unmodified	_QVGVPLFP_					0	0	0		ENST00000602321.5_1_16:67683742-67683967:+|nuORF	ENST00000602321.5_1_16:67683742-67683967:+|nuORF	ENST00000602321.5_1_16:67683742-67683967:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.7497253417969	2	428.749996	855.485439	-0.036892	-1.5818E-05	-1.5972	-0.00068479	-1.6341	-0.00070061	428.74981721515536	68.522	1.148	68.522	68.25	69.398	0					58	41	2	0	0	0	0.421	1	17284	17284		15.768	1.1865	1	306760			36343	12264	21402	21403	43898	43898					0.05191605219704343
QVGVPLFP	8	Unmodified	_QVGVPLFP_					0	0	0		ENST00000602321.5_1_16:67683742-67683967:+|nuORF	ENST00000602321.5_1_16:67683742-67683967:+|nuORF	ENST00000602321.5_1_16:67683742-67683967:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.74957275390625	2	428.749996	855.485439	-0.1179	-5.0548E-05	-1.7145	-0.00073508	-1.8324	-0.00078563	428.7498030612232	68.39	1.3586	68.462	68.134	69.493	0.071938					68	49	2	0	0	0	0.421	1	17239	17239		15.768	4.1279	1	436020			36344	12264	21402	21403	43899	43899					0.05191605219704343
QVGVPLFP	8	Unmodified	_QVGVPLFP_					0	0	0		ENST00000602321.5_1_16:67683742-67683967:+|nuORF	ENST00000602321.5_1_16:67683742-67683967:+|nuORF	ENST00000602321.5_1_16:67683742-67683967:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	428.749996	855.485439	0.019035	8.1613E-06	-0.13012	-5.5788E-05	-0.11108	-4.7626E-05	428.74971142843935	68.488	0.59346	68.469	68.197	68.79	-0.019157	-0.015696	0.00050926	NaN	15.768	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	460440			36345	12264	21402	21403							0.05191605219704343
QVHLELLE	8	Unmodified	_QVHLELLE_					0	0	0			REV__ENST00000478423.6_1_1:5965468-6029316:-|nuORF	REV__ENST00000478423.6_1_1:5965468-6029316:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.79779052734375	2	490.7742	979.533846	0.020315	9.9702E-06	-2.5187	-0.0012361	-2.4984	-0.0012262	490.7730493383794	12.861	0.36782	12.761	12.643	13.011	-0.099291					18	12	2	0	0	0	0.34218	1	288	288		9.3474	0	1	42259	+		36346	15527	21403	21404	43900	43900					0.04326054068951635
QVHNLLLTY	9	Unmodified	_QVHNLLLTY_					0	0	0		nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1	nc|ENSG00000170540|Q15041-2|ARL6IP1	nc|ENSG00000170540|Q15041-2|ARL6IP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.8209228515625	2	550.808574	1099.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.303	1	54.287	53.787	54.787	-0.015923								0	0	0	0.16757	1	12880	12880		30.637	5.2372	1				36347	6462	21404	21405	43901	43901					0.05677718368656315
QVHYVKLSGG	10	Unmodified	_QVHYVKLSGG_					0	0	0			REV__ENST00000540016.5_1_12:109994935-110011292:-|nuORF	REV__ENST00000540016.5_1_12:109994935-110011292:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.8169555664062	2	544.298373	1086.58219	0.54906	0.00029885	3.3806	0.00184	3.9296	0.0021389	544.2999966673444	26.111	0.22394	26.089	26.013	26.236	-0.022236					10	7	2	0	0	0	0.31745	1	4290	4290		8.7454	1.4562	1	67258	+		36348	22108	21405	21406	43902	43902					0.042365477088424086
QVIALYPTL	9	Unmodified	_QVIALYPTL_					0	0	0		nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;ENST00000551397.1_1_12:62981824-62986526:+|nuORF	nc|ENSG00000061987|Q7Z3U7-3|MON2	nc|ENSG00000061987|Q7Z3U7-3|MON2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7762756347656	2	509.302593	1016.59063	0.33592	0.00017109	0.27567	0.0001404	0.6116	0.00031149	509.8039688065745	86.959	0.78014	87.046	86.524	87.305	0.08709					59	31	3	0	0	0	0.24848	1	22759	22759		13.906	1.6654	1	213460			36349	764	21406	21407	43903	43903					0.08300101625468415
QVIGVVLQK	9	Unmodified	_QVIGVVLQK_					0	0	0		ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.3161315917969	2	492.316035	982.617516	0.3377	0.00016626	-0.35723	-0.00017587	-0.01953	-9.6147E-06	492.3158713026716	42.916	1.7341	42.916	42.33	44.065	0					176	63	5	0	0	0	4.1361E-11	3	9384	9334;9384;9432		189.78	117.85	1	13069000			36350	9202	21407	21408	43904;43905;43906	43905					0.12551210236642873
QVIGVVLQK	9	Unmodified	_QVIGVVLQK_					0	0	0		ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.3161315917969	2	492.316035	982.617516	0.31236	0.00015378	-0.27743	-0.00013658	0.034928	1.7196E-05	492.3159240484825	42.808	1.5424	42.893	42.539	44.082	0.085197					153	56	5	0	0	0	1.8227E-16	5	9351	9305;9351;9393;9445;9508		205.78	123.89	1	14019000			36351	9202	21407	21408	43907;43908;43909;43910;43911	43908					0.12551210236642873
QVIGVVLQK	9	Unmodified	_QVIGVVLQK_					0	0	0		ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	ENST00000297857.3_1_8:124268339-124279533:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.31622314453125	2	492.316035	982.617516	0.13644	6.7173E-05	-0.1136	-5.5929E-05	0.022839	1.1244E-05	492.31603803455863	42.754	1.3495	42.845	42.499	43.849	0.091362					152	49	5	0	0	0	4.1361E-11	5	9328	9283;9328;9378;9421;9474		189.78	107.89	1	14342000			36352	9202	21407	21408	43912;43913;43914;43915;43916	43913					0.12551210236642873
QVILVQPYK	9	Unmodified	_QVILVQPYK_					0	0	0		ENST00000370801.7_1_1:78107309-78148295:-|nuORF;ENST00000370798.5_1_1:78107309-78149041:-|nuORF	ENST00000370801.7_1_1:78107309-78148295:-|nuORF	ENST00000370801.7_1_1:78107309-78148295:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.776123046875	2	544.329142	1086.64373	0.62405	0.00033969	-0.8558	-0.00046584	-0.23175	-0.00012615	544.3287940641937	45.339	0.5444	45.339	45.095	45.64	0					37	19	3	0	0	0	0.23784	1	10126	10126		19.257	4.4187	1	411530			36353	9807	21408	21409	43917	43917					0.10387479408109357
QVILVQPYK	9	Unmodified	_QVILVQPYK_					0	0	0		ENST00000370801.7_1_1:78107309-78148295:-|nuORF;ENST00000370798.5_1_1:78107309-78149041:-|nuORF	ENST00000370801.7_1_1:78107309-78148295:-|nuORF	ENST00000370801.7_1_1:78107309-78148295:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2870483398438	2	544.329142	1086.64373	0.81103	0.00044147	-1.225	-0.00066681	-0.41398	-0.00022534	544.3286556167399	45.248	0.48268	45.317	45.062	45.545	0.068573					35	16	3	0	0	0	0.23784	1	10129	10129		13.906	0	1	395640			36354	9807	21408	21409	43918	43918					0.10387479408109357
QVILVQPYK	9	Unmodified	_QVILVQPYK_					0	0	0		ENST00000370801.7_1_1:78107309-78148295:-|nuORF;ENST00000370798.5_1_1:78107309-78149041:-|nuORF	ENST00000370801.7_1_1:78107309-78148295:-|nuORF	ENST00000370801.7_1_1:78107309-78148295:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.287353515625	2	544.329142	1086.64373	0.70123	0.0003817	-1.1583	-0.00063052	-0.45711	-0.00024882	544.3285770820457	45.239	0.61668	45.308	45.01	45.627	0.069386					43	22	3	0	0	0	0.23784	1	10104	10104		19.257	4.4187	1	424580			36355	9807	21408	21409	43919	43919					0.10387479408109357
QVIQNVTHK	9	Unmodified	_QVIQNVTHK_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP;ENST00000475896.5_1_3:100583650-100712249:-|nuORF	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.8222045898438	2	533.803823	1065.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.11	1	12.013	11.513	12.513	-0.096607								0	0	0	0.23852	1	31	31		10.074	1.9184	1				36356	5110	21409	21410	43920	43920					0.06291950083118536
QVITETAKK	9	Unmodified	_QVITETAKK_					0	0	0		ENSG00000120675|ENST00000379221|DNAJC15;ENST00000474320.1_1_13:43597726-43652825:+|nuORF	ENSG00000120675|ENST00000379221|DNAJC15	ENSG00000120675|ENST00000379221|DNAJC15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3002014160156	2	509.300581	1016.58661	-0.022415	-1.1416E-05	-0.50565	-0.00025753	-0.52807	-0.00026894	509.30014925944164	14.489	0.27723	14.384	14.238	14.516	-0.10466					16	8	2	0	0	0	0.30459	1	748	748		8.1555	2.4237	1	80312			36357	2954	21410	21411	43921	43921					0.07898012131738597
QVITETAKK	9	Unmodified	_QVITETAKK_					0	0	0		ENSG00000120675|ENST00000379221|DNAJC15;ENST00000474320.1_1_13:43597726-43652825:+|nuORF	ENSG00000120675|ENST00000379221|DNAJC15	ENSG00000120675|ENST00000379221|DNAJC15	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	509.300581	1016.58661	0.0097711	4.9764E-06	-0.37988	-0.00019347	-0.37011	-0.0001885	509.3002518769673	14.367	0.34212	14.367	14.249	14.591	0	-0.02739	0.0001682	NaN	8.1555	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73641			36358	2954	21410	21411							0.07898012131738597
QVITETAKK	9	Unmodified	_QVITETAKK_					0	0	0		ENSG00000120675|ENST00000379221|DNAJC15;ENST00000474320.1_1_13:43597726-43652825:+|nuORF	ENSG00000120675|ENST00000379221|DNAJC15	ENSG00000120675|ENST00000379221|DNAJC15	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	509.300581	1016.58661	-0.061383	-3.1263E-05	-0.98424	-0.00050127	-1.0456	-0.00053254	509.2998236008463	14.497	0.29877	14.431	14.289	14.588	-0.066067	0.037306	-0.0004474	NaN	8.1555	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74771			36359	2954	21410	21411							0.07898012131738597
QVKFAIRTIP	10	Unmodified	_QVKFAIRTIP_					0	0	0			REV__ENSG00000275954|ENST00000620210|TBC1D3F	REV__ENSG00000275954|ENST00000620210|TBC1D3F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3353881835938	2	586.861141	1171.70773	0.48488	0.00028456	-0.33861	-0.00019872	0.14626	8.5836E-05	586.8608921670947	55.632	0.47681	55.632	55.431	55.907	0					32	16	3	0	0	0	0.31629	1	13282	13282		6.2058	6.2058	1	282090	+		36360	19276	21411	21412	43922	43922					0.1287425956509196
QVKFAIRTIP	10	Unmodified	_QVKFAIRTIP_					0	0	0			REV__ENSG00000275954|ENST00000620210|TBC1D3F	REV__ENSG00000275954|ENST00000620210|TBC1D3F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.335693359375	2	586.861141	1171.70773	0.53496	0.00031395	0.034687	2.0357E-05	0.56965	0.0003343	587.3627628590793	55.642	0.40826	55.712	55.446	55.854	0.070885					26	14	2	0	0	0	0.31629	1	13237	13237		10.074	2.1638	1	291190	+		36361	19276	21411	21412	43923	43923					0.1287425956509196
QVKFAIRTIP	10	Unmodified	_QVKFAIRTIP_					0	0	0			REV__ENSG00000275954|ENST00000620210|TBC1D3F	REV__ENSG00000275954|ENST00000620210|TBC1D3F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3352661132812	2	586.861141	1171.70773	0.63844	0.00037468	-0.33259	-0.00019518	0.30586	0.0001795	587.3623737768437	55.844	0.48469	55.825	55.536	56.021	-0.019077					25	17	2	0	0	0	0.31629	1	13305	13305		10.074	2.1638	1	316060	+		36362	19276	21411	21412	43924	43924					0.1287425956509196
QVKKPDPK	8	Unmodified	_QVKKPDPK_					0	0	0			REV__nc|ENSG00000134602|Q9P289-2|STK26	REV__nc|ENSG00000134602|Q9P289-2|STK26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2841796875	2	470.284734	938.554916	-0.052858	-2.4858E-05	-0.1918	-9.0199E-05	-0.24465	-0.00011506	470.28445127525595	23.989	0.78672	23.989	23.699	24.486	0					46	26	3	0	0	0	0.45169	1	3669	3669		5.2307	0	1	120110	+		36363	15689	21412	21413	43925	43925					0.08318064168463479
QVKLCSSIH	9	Unmodified	_QVKLCSSIH_					0	0	0			REV__nc|ENSG00000158717|Q96A37-2|RNF166	REV__nc|ENSG00000158717|Q96A37-2|RNF166	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7594299316406	2	507.773677	1013.5328	0.21017	0.00010672	-0.69248	-0.00035162	-0.48231	-0.0002449	507.77327381170886	24.1	0.68521	24.1	23.769	24.454	0					60	23	3	0	0	0	0.21303	1	3677	3677		21.747	9.2151	1	238060	+		36364	16822	21413	21414	43926	43926					0.02657516428382678
QVKLCSSIH	9	Unmodified	_QVKLCSSIH_					0	0	0			REV__nc|ENSG00000158717|Q96A37-2|RNF166	REV__nc|ENSG00000158717|Q96A37-2|RNF166	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.7735900878906	2	507.773677	1013.5328	0.26962	0.00013691	-0.67028	-0.00034035	-0.40065	-0.00020344	507.7732555605352	24.203	0.71725	24.165	23.82	24.537	-0.038927					60	24	3	0	0	0	0.25526	1	3678	3678		7.9102	2.6795	1	260960	+		36365	16822	21413	21414	43927	43927					0.02657516428382678
QVKQANLV	8	Unmodified	_QVKQANLV_					0	0	0		ENST00000225964.9_1_17:48268227-48270392:-|nuORF	ENST00000225964.9_1_17:48268227-48270392:-|nuORF	ENST00000225964.9_1_17:48268227-48270392:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7586669921875	2	450.269084	898.523616	0.39331	0.0001771	-0.78453	-0.00035325	-0.39122	-0.00017615	450.26867319847156	36.809	0.6134	36.809	36.479	37.093	0					36	21	2	0	0	0	0.31934	1	7586	7586		18.135	4.6271	1	221520			36366	8845	21414	21415	43928	43928					0.07029491134369437
QVKQANLV	8	Unmodified	_QVKQANLV_					0	0	0		ENST00000225964.9_1_17:48268227-48270392:-|nuORF	ENST00000225964.9_1_17:48268227-48270392:-|nuORF	ENST00000225964.9_1_17:48268227-48270392:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.75872802734375	2	450.269084	898.523616	0.28816	0.00012975	-0.71358	-0.0003213	-0.42542	-0.00019155	450.26865819996954	36.725	0.5756	36.813	36.542	37.117	0.08741					35	20	2	0	0	0	0.31934	1	7556	7556		18.135	10.225	1	239230			36367	8845	21414	21415	43929	43929					0.07029491134369437
QVKQANLV	8	Unmodified	_QVKQANLV_					0	0	0		ENST00000225964.9_1_17:48268227-48270392:-|nuORF	ENST00000225964.9_1_17:48268227-48270392:-|nuORF	ENST00000225964.9_1_17:48268227-48270392:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.7587890625	2	450.269084	898.523616	0.62525	0.00028153	-0.91622	-0.00041255	-0.29098	-0.00013102	450.2686496877973	36.724	0.57462	36.817	36.486	37.06	0.093014					35	20	2	0	0	0	0.31934	1	7543	7543		18.135	0	1	230480			36368	8845	21414	21415	43930	43930					0.07029491134369437
QVKYIAPKVA	10	Unmodified	_QVKYIAPKVA_					0	0	0			REV__ENSG00000115207|ENST00000264720|GTF3C2	REV__ENSG00000115207|ENST00000264720|GTF3C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3495483398438	2	558.842416	1115.67028	0.46242	0.00025842	-1.1374	-0.00063561	-0.67495	-0.00037719	558.84160151829	45.059	1.3537	45.059	44.232	45.586	0					108	49	3	0	0	0	0.30586	1	9797	9797		19.257	4.4187	1	822150	+		36369	14865	21415	21416	43931	43931					0.1170716829947196
QVLATFVV	8	Unmodified	_QVLATFVV_					0	0	0		ENST00000529034.5_1_11:36317928-36422672:+|nuORF	ENST00000529034.5_1_11:36317928-36422672:+|nuORF	ENST00000529034.5_1_11:36317928-36422672:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.7628173828125	2	438.763104	875.511654	0.17113	7.5085E-05	-0.24997	-0.00010968	-0.078846	-3.4595E-05	438.76290187810713	71.773	0.63324	71.746	71.537	72.171	-0.027275					43	22	3	0	0	0	0.42077	1	18315	18315		15.847	1.0089	1	452850			36370	11594	21416	21417	43932	43932					0.06891874391180863
QVLHVDVHK	9	Unmodified	_QVLHVDVHK_					0	0	0			REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2982177734375	2	537.806365	1073.59818	0.43436	0.0002336	-0.22078	-0.00011874	0.21358	0.00011486	537.8060568270356	17.585	0.37843	17.585	17.341	17.719	0					19	12	2	0	0	0	0.25431	1	1659	1659		9.3831	2.0939	1	79101	+		36371	16534	21417	21418	43933	43933					0.0643225394574074
QVLHVDVHK	9	Unmodified	_QVLHVDVHK_					0	0	0			REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.298095703125	2	537.806365	1073.59818	0.41733	0.00022444	-0.11026	-5.9299E-05	0.30707	0.00016514	537.8059957054221	17.705	0.54536	17.645	17.298	17.844	-0.060429					29	18	2	0	0	0	0.25431	1	1685	1685		9.3831	2.0939	1	72454	+		36372	16534	21417	21418	43934	43934					0.0643225394574074
QVLHVDVHK	9	Unmodified	_QVLHVDVHK_					0	0	0			REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	537.806365	1073.59818	0.20478	0.00011013	0.55063	0.00029613	0.75541	0.00040627	537.8064069755226	17.747	0.34447	17.629	17.467	17.812	-0.11739	0.0096465	0.00042973	NaN	9.3831	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85907	+		36373	16534	21417	21418							0.0643225394574074
QVLKSIKFA	9	Unmodified	_QVLKSIKFA_					0	0	0			REV__ENST00000284073.6_1_17:55759113-55759179:+|nuORF	REV__ENST00000284073.6_1_17:55759113-55759179:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7354736328125	2	517.32386	1032.63317	0.49997	0.00025865	-0.64526	-0.00033381	-0.14529	-7.5163E-05	517.3234933889645	49.047	2.2012	49.047	48.721	50.922	0					99	80	2	0	0	0	0.2451	1	11624	11624		15.847	3.3156	1	235850	+		36374	19727	21418	21419	43935	43935					0.11815496753729349
QVLNGAEASF	10	Unmodified	_QVLNGAEASF_					0	0	0			REV__nc|ENSG00000179057|Q8N9C0|IGSF22	REV__nc|ENSG00000179057|Q8N9C0|IGSF22	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.248291015625	2	518.258914	1034.50327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.5	1	33.566	33.066	34.066	0.06636								0	0	0	0.34994	1	6505	6505		14.838	1.3304	1		+		36375	18058	21419	21420	43936	43936					-0.012597243161053484
QVLNRHLT	8	Unmodified	_QVLNRHLT_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7978820800781	2	490.785433	979.556313	-0.094167	-4.6216E-05	0.12655	6.211E-05	0.032384	1.5894E-05	490.7853623154146	12.867	0.38464	12.799	12.58	12.965	-0.067496					22	12	3	0	0	0	0.44569	1	294	294		7.2892	1.5574	1	38893			36376	4291	21420	21421	43937	43937					0.06571698257209846
QVLTLLLNK	9	Unmodified	_QVLTLLLNK_					0	0	0		ENSG00000107551|ENST00000340258|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF;nc|ENSG00000107551|Q9H2L5-3|RASSF4;nc|ENSG00000107551|Q9H2L5-2|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.3367919921875	2	521.336967	1040.65938	0.48292	0.00025176	-0.53984	-0.00028144	-0.056925	-2.9677E-05	521.3364993809649	58.831	0.9453	58.831	58.269	59.215	0					57	32	3	0	0	0	0.12642	1	14268	14268		34.402	11.665	1	403440			36377	2131	21421	21422	43938	43938					0.14067765925165077
QVLTLLLNK	9	Unmodified	_QVLTLLLNK_					0	0	0		ENSG00000107551|ENST00000340258|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF;nc|ENSG00000107551|Q9H2L5-3|RASSF4;nc|ENSG00000107551|Q9H2L5-2|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.3368530273438	2	521.336967	1040.65938	0.51201	0.00026693	-0.66057	-0.00034438	-0.14855	-7.7445E-05	521.3363504186428	58.796	1.3661	58.782	58.445	59.811	-0.014267					66	48	3	0	0	0	0.11201	1	14287	14287		36.506	5.2379	1	520300			36378	2131	21421	21422	43939	43939					0.14067765925165077
QVLTLPLMLK	10	Oxidation (M)	_QVLTLPLM(Oxidation (M))LK_		QVLTLPLM(1)LK		QVLTLPLM(74)LK	0	0	1		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483359.5_1_20:34220178-34252711:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3591918945312	2	586.359585	1170.70462	0.40867	0.00023963	-1.1173	-0.00065514	-0.70863	-0.00041551	586.3587564297956	66.24	0.63889	66.324	66.02	66.659	0.083832					64	22	4	0	0	0	0.017732	2	16580	16531;16580		74.2	45.118	1	1269000			36379	8377	21422	21423	43940;43941	43941		903			0.12609248396029216
QVLTLPLMLK	10	Oxidation (M)	_QVLTLPLM(Oxidation (M))LK_		QVLTLPLM(1)LK		QVLTLPLM(87)LK	0	0	1		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483359.5_1_20:34220178-34252711:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3591918945312	2	586.359585	1170.70462	0.35015	0.00020531	-1.176	-0.00068954	-0.82582	-0.00048423	586.358742464547	66.34	0.67534	66.327	66.063	66.739	-0.013588					61	24	3	0	0	0	0.0057544	2	16621	16575;16621		87.258	59.629	1	1166800			36380	8377	21422	21423	43942;43943	43943		903			0.12609248396029216
QVMATESTQTF	11	Unmodified	_QVMATESTQTF_					0	0	0			REV__ENST00000540741.5_1_1:159770387-159778302:+|nuORF	REV__ENST00000540741.5_1_1:159770387-159778302:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.7869873046875	2	621.787178	1241.5598	0.25659	0.00015955	-1.2084	-0.00075135	-0.95178	-0.0005918	621.7865841678787	72.403	0.67675	72.46	72.224	72.901	0.056572					49	24	3	0	0	0	0.29518	1	18426	18426		22.658	0.91144	1	517440	+		36381	18133	21423	21424	43944	43944					-0.051314645417505744
QVMSLGLQK	9	Oxidation (M)	_QVM(Oxidation (M))SLGLQK_		QVM(1)SLGLQK		QVM(44)SLGLQK	0	0	1		ENST00000562237.5_1_16:69166520-69170710:+|nuORF;ENST00000314423.11_1_16:69166475-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.28167724609375	2	510.281334	1018.54812	0.42746	0.00021813	-0.44472	-0.00022693	-0.017254	-8.8046E-06	510.28106373293224	30.108	0.72281	30.108	29.75	30.473	0					55	25	3	0	0	0	0.11234	1	5449	5449		43.772	22.026	1	418040			36382	9342	21424	21425	43945	43945		925			0.039583832255971174
QVMSLGLQK	9	Oxidation (M)	_QVM(Oxidation (M))SLGLQK_		QVM(1)SLGLQK		QVM(46)SLGLQK	0	0	1		ENST00000562237.5_1_16:69166520-69170710:+|nuORF;ENST00000314423.11_1_16:69166475-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	ENST00000562237.5_1_16:69166520-69170710:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.281005859375	2	510.281334	1018.54812	0.33425	0.00017056	-0.52682	-0.00026883	-0.19257	-9.8267E-05	510.28096674712907	30.098	0.8741	30.125	29.819	30.693	0.027948					60	30	3	0	0	0	0.069366	1	5496	5496		45.7	22.963	1	470490			36383	9342	21424	21425	43946	43946		925			0.039583832255971174
QVMTTFQV	8	Unmodified	_QVMTTFQV_					0	0	0			REV__ENST00000218328.12_1_X:53611240-53681066:-|nuORF	REV__ENST00000218328.12_1_X:53611240-53681066:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.2764892578125	2	477.241678	952.468803	0.62661	0.00029904	-2.6258	-0.0012531	-1.9992	-0.0009541	477.2402210463555	60.704	0.27349	60.704	60.577	60.851	0					10	9	2	0	0	0	0.32886	1	14893	14893		15.847	4.7327	1	137020	+		36384	13980	21425	21426	43947	43947					-0.009332637285410783
QVNDLFSRK	9	Unmodified	_QVNDLFSRK_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	ENSG00000196275|ENST00000451013|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8005981445312	2	553.80128	1105.58801	0.45679	0.00025297	-1.6041	-0.00088836	-1.1473	-0.00063539	553.8006292347045	30.016	0.45072	30.016	29.774	30.225	0					27	15	2	0	0	0	0.09758	1	5485	5485		38.615	13.624	1	225800			36385	8667;6792	21426	21427	43948	43948					0.03943646220500341
QVNDLFSRK	9	Unmodified	_QVNDLFSRK_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	ENSG00000196275|ENST00000451013|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8006591796875	2	553.80128	1105.58801	0.41097	0.00022759	-1.3316	-0.00073746	-0.92066	-0.00050987	553.8008429336212	29.974	0.48284	29.987	29.72	30.202	0.012264					26	16	2	0	0	0	0.2869	1	5473	5473		10.8	5.0677	1	180680			36386	8667;6792	21426	21427	43949	43949					0.03943646220500341
QVNDLFSRK	9	Unmodified	_QVNDLFSRK_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	ENSG00000196275|ENST00000451013|GTF2IRD2;nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8012084960938	2	553.80128	1105.58801	0.015363	8.5083E-06	-1.1058	-0.00061241	-1.0905	-0.0006039	553.8010197201094	30.008	0.43808	30.035	29.812	30.25	0.027157					25	14	2	0	0	0	0.064268	1	5442	5442		47.594	21.326	1	246370			36387	8667;6792	21426	21427	43950	43950					0.03943646220500341
QVNFKTLVY	9	Unmodified	_QVNFKTLVY_					0	0	0			REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3110961914062	2	556.310949	1110.60735	0.51376	0.00028581	-0.52285	-0.00029087	-0.0090943	-5.0593E-06	556.3107732729715	65.681	0.9461	65.681	65.293	66.239	0					61	33	3	0	0	0	0.1939	1	16416	16416		24.021	0	1	653460	+		36388	14010	21427	21428	43951	43951					0.0564660251143323
QVNGGTVAEK	10	Unmodified	_QVNGGTVAEK_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000413027.1_1_6:31248141-31248948:+|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7641906738281	2	501.764363	1001.51417	0.05919	2.9699E-05	-0.45719	-0.0002294	-0.398	-0.0001997	501.76409293662243	14.618	0.37444	14.514	14.368	14.742	-0.10466					25	12	3	0	0	0	0.37007	1	790	790		8.9762	1.3673	1	100990			36389	1567	21428	21429	43952	43952					0.013476780581868297
QVNGGTVAEK	10	Unmodified	_QVNGGTVAEK_					0	0	0		ENSG00000100316|ENST00000216146|RPL3;ENST00000413027.1_1_6:31248141-31248948:+|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.764404296875	2	501.764363	1001.51417	0.013582	6.8151E-06	-0.24796	-0.00012442	-0.23438	-0.0001176	501.764295469549	14.607	0.38818	14.541	14.4	14.788	-0.066068					23	13	2	0	0	0	0.31538	1	790	790		12.873	3.5252	1	111570			36390	1567	21428	21429	43953	43953					0.013476780581868297
QVNLPESGVI	10	Unmodified	_QVNLPESGVI_					0	0	0			REV__ENST00000313683.14_1_19:46974176-46974710:-|nuORF	REV__ENST00000313683.14_1_19:46974176-46974710:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7554931640625	2	528.290214	1054.56587	0.76234	0.00040274	2.4142	0.0012754	3.1766	0.0016782	528.2919594155147	56.397	0.75317	56.397	56.184	56.937	0					42	27	2	0	0	0	0.28434	1	13536	13536		9.3831	0	1	456330	+		36391	19919	21429	21430	43954	43954					0.040774217520947786
QVPFGVPR	8	Unmodified	_QVPFGVPR_					0	0	0		Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|236|3|anti-sense;Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|216|3|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|236|3|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|236|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7848815917969	2	450.25852	898.502486	0.15256	6.8691E-05	0.0019584	8.8179E-07	0.15452	6.9573E-05	450.25865899582914	19.656	0.55984	19.54	19.341	19.9	-0.11592					22	18	2	0	0	0	0.34434	1	2370	2370		0.79363	0	1	28122			36392	12360	21430	21431	43955	43955					0.04917525825521807
QVPFGVPR	8	Unmodified	_QVPFGVPR_					0	0	0		Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|236|3|anti-sense;Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|216|3|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|236|3|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|236|3|anti-sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	450.25852	898.502486	0.22732	0.00010235	0.47024	0.00021173	0.69756	0.00031408	450.2589777733552	19.548	0.42412	19.492	19.337	19.762	-0.055693	-0.023768	0.00025808	NaN	0.79363	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29734			36393	12360	21430	21431							0.04917525825521807
QVPGVGAVQQQ	11	Unmodified	_QVPGVGAVQQQ_					0	0	0		ENST00000480582.1_1_7:150555040-150557681:+|nuORF	ENST00000480582.1_1_7:150555040-150557681:+|nuORF	ENST00000480582.1_1_7:150555040-150557681:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7962646484375	2	555.798737	1109.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.43	1	115.41	114.91	115.91	-0.020988								0	0	0	0.37382	1	29937	29937		2.9952	0.41776	1				36394	11010	21431	21432	43956	43956					0.03251342357907561
QVPGVGAVQQQ	11	Unmodified	_QVPGVGAVQQQ_					0	0	0		ENST00000480582.1_1_7:150555040-150557681:+|nuORF	ENST00000480582.1_1_7:150555040-150557681:+|nuORF	ENST00000480582.1_1_7:150555040-150557681:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.796630859375	2	555.798737	1109.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.41	1	114.42	113.92	114.92	0.016708								0	0	0	0.36335	1	29751	29751		5.2969	0.96765	1				36395	11010	21431	21432	43957	43957					0.03251342357907561
QVPHRRSDVPR	11	Unmodified	_QVPHRRSDVPR_					0	0	0			REV__ENST00000566525.5_1_16:771546-771968:+|nuORF	REV__ENST00000566525.5_1_16:771546-771968:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.598876953125	3	449.584848	1345.73271	-0.038806	-1.7447E-05	0.030853	1.3871E-05	-0.007953	-3.5756E-06	449.9193696143563	15.396	0.42588	15.286	15.038	15.464	-0.10982					25	14	3	0	0	0	0.33296	1	944	944		2.6312	1.4164	1	28818	+		36396	22371	21432	21433	43958	43958					0.07367707420348779
QVPLRYPI	8	Unmodified	_QVPLRYPI_					0	0	0		ENSG00000198382|ENST00000356136|UVRAG;nc|ENSG00000198382|Q9P2Y5-2|UVRAG	ENSG00000198382|ENST00000356136|UVRAG	ENSG00000198382|ENST00000356136|UVRAG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8033752441406	2	493.295102	984.575651	0.39494	0.00019482	1.8824	0.00092856	2.2773	0.0011234	493.2959831104687	43.792	0.49922	43.876	43.549	44.049	0.083992					29	18	2	0	0	0	0.31088	1	9596	9596		28.487	19.104	1	324820			36397	8067	21433	21434	43959	43959					0.08274654548119997
QVPLRYPI	8	Unmodified	_QVPLRYPI_					0	0	0		ENSG00000198382|ENST00000356136|UVRAG;nc|ENSG00000198382|Q9P2Y5-2|UVRAG	ENSG00000198382|ENST00000356136|UVRAG	ENSG00000198382|ENST00000356136|UVRAG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.295102	984.575651	0.3229	0.00015928	2.5734	0.0012694	2.8963	0.0014287	493.2964524230145	43.845	0.60323	43.845	43.602	44.206	0	-0.01784	0.00047211	NaN	28.487	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	464570			36398	8067	21433	21434							0.08274654548119997
QVPRYRGTV	9	Unmodified	_QVPRYRGTV_					0	0	0			REV__nc|ENSG00000186431|P24071-5|FCAR	REV__nc|ENSG00000186431|P24071-5|FCAR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.8010864257812	2	538.30399	1074.59343	0.15456	8.3198E-05	-2.1495	-0.0011571	-1.9949	-0.0010739	538.3027759285926	13.7	0.42648	13.7	13.396	13.822	0					20	14	2	0	0	0	0.25706	1	506	506		6.7232	0.99131	1	128800	+		36399	23139	21434	21435	43960	43960					0.05911369802970512
QVQAAQFAK	9	Unmodified	_QVQAAQFAK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7716064453125	2	495.771991	989.529429	0.23545	0.00011673	0.11381	5.6425E-05	0.34926	0.00017316	495.77191954563773	25.901	0.84747	25.901	25.562	26.41	0					69	29	3	0	0	0	0.0042343	1	4158	4158		92.491	52.534	1	1256200			36400	3877	21435	21436	43961	43961					0.034245896460333825
QVQAAQFAK	9	Unmodified	_QVQAAQFAK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7719421386719	2	495.771991	989.529429	0.17699	8.7747E-05	0.023022	1.1414E-05	0.20001	9.9161E-05	495.77192744562785	25.9	0.84592	25.861	25.556	26.402	-0.038671					74	29	4	0	0	0	0.0028127	2	4178	4178;4222		103.75	55.402	1	1523300			36401	3877	21435	21436	43962;43963	43962					0.034245896460333825
QVQAAQFAK	9	Unmodified	_QVQAAQFAK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7720947265625	2	495.771991	989.529429	0.23806	0.00011802	0.039996	1.9829E-05	0.27806	0.00013785	495.77197227912103	25.939	0.95125	25.917	25.579	26.53	-0.022236					82	33	4	0	0	0	0.0018995	1	4183	4183		111.29	62.941	1	1406400			36402	3877	21435	21436	43964	43964					0.034245896460333825
QVQCKSTESF	10	Unmodified	_QVQCKSTESF_					0	0	0			REV__ENST00000519948.3_1_12:74932648-74932756:+|nuORF	REV__ENST00000519948.3_1_12:74932648-74932756:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3057861328125	2	578.768788	1155.52302	0.5176	0.00029957	0.74831	0.0004331	1.2659	0.00073267	578.7692937798141	54.243	0.79482	54.243	53.914	54.708	0					46	28	3	0	0	0	0.31267	1	12817	12817		10.074	0	1	322260	+		36403	21878	21436	21437	43965	43965					-0.04851716367647896
QVQDRFSP	8	Unmodified	_QVQDRFSP_					0	0	0			REV__ENSG00000023839|ENST00000647814|ABCC2	REV__ENSG00000023839|ENST00000647814|ABCC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2635498046875	2	488.745973	975.477394	-0.040178	-1.9637E-05	1.1814	0.00057741	1.1412	0.00055777	488.74650399221576	13.178	0.25113	13.178	13.031	13.282	0					19	8	3	0	0	0	0.46092	1	354	354		2.0598	0	1	49329	+		36404	13473	21437	21438	43966	43966					-0.011325737677111647
QVQDRFSP	8	Unmodified	_QVQDRFSP_					0	0	0			REV__ENSG00000023839|ENST00000647814|ABCC2	REV__ENSG00000023839|ENST00000647814|ABCC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2635192871094	2	488.745973	975.477394	-0.040713	-1.9898E-05	0.69501	0.00033968	0.6543	0.00031979	488.7463083594224	13.223	0.23805	13.124	13.011	13.249	-0.099291					13	7	2	0	0	0	0.46092	1	374	374		2.0598	0	1	43471	+		36405	13473	21437	21438	43967	43967					-0.011325737677111647
QVQHSGSCLF	10	Unmodified	_QVQHSGSCLF_					0	0	0			REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3165283203125	2	553.258391	1104.50223	0.39355	0.00021774	-1.1363	-0.00062867	-0.74275	-0.00041093	553.2573626467959	62.734	0.21948	62.734	62.637	62.856	0					9	7	2	0	0	0	0.31482	1	15497	15497		11.64	5.8799	1	104290	+		36406	18643	21438	21439	43968	43968					-0.04584261956665614
QVQIDGLVVLK	11	Unmodified	_QVQIDGLVVLK_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;ENST00000518034.5_1_8:117671049-117768048:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.37158203125	2	606.371538	1210.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.26	1	116.28	115.78	116.78	0.020988								0	0	0	0.38222	1	30171	30171		0	0	1				36407	4780	21439	21440	43969	43969					0.13158805154080255
QVQPVDGATRK	11	Unmodified	_QVQPVDGATRK_					0	0	0		ENST00000534350.5_1_8:146279384-146279540:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.8306884765625	2	599.830569	1197.64658	0.19182	0.00011506	0.23701	0.00014217	0.42883	0.00025723	599.8306285252488	15.226	0.5159	15.226	15.012	15.528	0					44	17	4	0	0	0	0.074971	2	944	944;987		46.022	30.774	1	320740			36408	7286	21440	21441	43970;43971	43970					0.05566702794953926
QVQPVDGATRK	11	Unmodified	_QVQPVDGATRK_					0	0	0		ENST00000534350.5_1_8:146279384-146279540:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.8308715820312	2	599.830569	1197.64658	0.28972	0.00017378	0.23895	0.00014333	0.52867	0.00031711	599.8306667227668	15.34	0.74776	15.23	15.038	15.786	-0.10982					51	25	4	0	0	0	0.049742	1	992	992		53.317	32.902	1	276160			36409	7286	21440	21441	43972	43972					0.05566702794953926
QVQPVDGATRK	11	Unmodified	_QVQPVDGATRK_					0	0	0		ENST00000534350.5_1_8:146279384-146279540:+|nuORF;ENSG00000182307|ENST00000331434|C8orf33;nc|nan|Q9H7E9-2|C8orf33;ENST00000530455.5_1_8:146277890-146279540:+|nuORF;ENST00000524395.5_1_8:146277890-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	ENST00000534350.5_1_8:146279384-146279540:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.8306884765625	2	599.830569	1197.64658	0.095219	5.7115E-05	0.29433	0.00017655	0.38955	0.00023367	599.8306386318912	15.329	0.4732	15.264	15.1	15.573	-0.064414					38	15	4	0	0	0	0.062849	2	982	982;1031		49.527	29.113	1	337670			36410	7286	21440	21441	43973;43974	43973					0.05566702794953926
QVRALDRFQV	10	Unmodified	_QVRALDRFQV_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	615.8114013671875	2	616.348929	1230.6833	0.36298	0.00022372	-0.98178	-0.00060512	-0.6188	-0.0003814	616.3481665459551	66.086	0.68402	66.169	65.888	66.572	0.083824					53	24	3	0	0	0	0.31597	1	16613	16613		13.906	5.9959	1	744230			36411	1207	21441	21442	43975	43975					0.0771899941155425
QVRALDRFQV	10	Unmodified	_QVRALDRFQV_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	615.811279296875	2	616.348929	1230.6833	0.26159	0.00016123	-0.66199	-0.00040802	-0.4004	-0.00024678	616.3483742307515	66.156	0.64904	66.143	65.89	66.539	-0.013588					51	23	4	0	0	0	0.31597	1	16644	16644		19.257	11.347	1	570710			36412	1207	21441	21442	43976	43976					0.0771899941155425
QVREEESI	8	Unmodified	_QVREEESI_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2485656738281	2	495.248546	988.482539	0.51237	0.00025375	-0.53356	-0.00026424	-0.021187	-1.0493E-05	495.24829768605105	20.682	0.71314	20.682	20.395	21.108	0					56	24	3	0	0	0	0.34226	1	2588	2588		10.074	0	1	188880	+		36413	15219	21442	21443	43977	43977					-0.012163146957504978
QVRELGSDR	9	Unmodified	_QVRELGSDR_					0	0	0			REV__ENST00000368433.5_1_1:154955906-154955999:+|nuORF	REV__ENST00000368433.5_1_1:154955906-154955999:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2798461914062	2	530.280712	1058.54687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.67	1	117.69	117.19	118.19	0.023476								0	0	0	0.25197	1	30493	30493		5.7319	0	1		+		36414	20339	21443	21444	43978	43978					0.019938851810593405
QVRGIPRNV	9	Unmodified	_QVRGIPRNV_					0	0	0			REV__nc|ENSG00000165671|Q96L73-2|NSD1	REV__nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2758178710938	2	519.811982	1037.60941	0.52774	0.00027432	0.48999	0.0002547	1.0177	0.00052903	519.8130725176723	83.698	0.73763	83.775	83.188	83.925	0.077095					44	28	2	0	0	0	0.25622	1	21781	21781		7.2892	1.0834	1	288910	+		36415	17252	21444	21445	43979	43979					0.09211076039878208
QVRKAVDAL	9	Unmodified	_QVRKAVDAL_					0	0	0		ENSG00000171490|ENST00000571133|RSL1D1;ENST00000574287.1_1_16:11941440-11945369:-|nuORF	ENSG00000171490|ENST00000571133|RSL1D1	ENSG00000171490|ENST00000571133|RSL1D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.3012390136719	2	500.300916	998.587279	0.32736	0.00016378	0.057456	2.8745E-05	0.38482	0.00019252	500.30091621018806	21.814	0.61647	21.814	21.573	22.189	0					41	22	3	0	0	0	0.25314	1	2952	2952		15.847	0	1	202240			36416	6547	21445	21446	43980	43980					0.08792851571456595
QVRKAVDAL	9	Unmodified	_QVRKAVDAL_					0	0	0		ENSG00000171490|ENST00000571133|RSL1D1;ENST00000574287.1_1_16:11941440-11945369:-|nuORF	ENSG00000171490|ENST00000571133|RSL1D1	ENSG00000171490|ENST00000571133|RSL1D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.30072021484375	2	500.300916	998.587279	0.38264	0.00019144	-0.54188	-0.0002711	-0.15924	-7.9667E-05	500.30055645709695	21.939	0.40864	21.839	21.608	22.017	-0.10034					32	14	3	0	0	0	0.19747	1	2994	2994		24.021	2.2739	1	186330			36417	6547	21445	21446	43981	43981					0.08792851571456595
QVRLPLGTL	9	Unmodified	_QVRLPLGTL_					0	0	0		ENSG00000101654|ENST00000383314|RNMT;nc|ENSG00000101654|O43148-2|RNMT	ENSG00000101654|ENST00000383314|RNMT	ENSG00000101654|ENST00000383314|RNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.8139343261719	2	498.813659	995.612765	0.36411	0.00018162	0.30353	0.00015141	0.66764	0.00033303	498.8137139085207	58.993	0.8838	58.993	58.595	59.479	0					61	30	3	0	0	0	0.004681	1	14322	14322		88.954	30.275	1	615910			36418	1715	21446	21447	43982	43982					0.11478326093913438
QVRLPLGTL	9	Unmodified	_QVRLPLGTL_					0	0	0		ENSG00000101654|ENST00000383314|RNMT;nc|ENSG00000101654|O43148-2|RNMT	ENSG00000101654|ENST00000383314|RNMT	ENSG00000101654|ENST00000383314|RNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.81390380859375	2	498.813659	995.612765	0.41426	0.00020664	0.27122	0.00013529	0.68549	0.00034193	498.8136959734472	58.831	0.93058	58.922	58.53	59.46	0.091305					63	32	3	0	0	0	0.004681	2	14264	14264;14311		88.954	27.596	1	660050			36419	1715	21446	21447	43983;43984	43983					0.11478326093913438
QVRLPLGTL	9	Unmodified	_QVRLPLGTL_					0	0	0		ENSG00000101654|ENST00000383314|RNMT;nc|ENSG00000101654|O43148-2|RNMT	ENSG00000101654|ENST00000383314|RNMT	ENSG00000101654|ENST00000383314|RNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.8140563964844	2	498.813659	995.612765	0.4332	0.00021609	0.26937	0.00013437	0.70258	0.00035046	498.8137233251592	58.938	0.87971	58.924	58.608	59.488	-0.014271					57	30	3	0	0	0	0.004681	2	14349	14297;14349		88.954	30.275	1	676800			36420	1715	21446	21447	43985;43986	43986					0.11478326093913438
QVRPVTEKL	9	Unmodified	_QVRPVTEKL_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.3219604492188	2	535.321848	1068.62914	0.41498	0.00022215	0.26389	0.00014126	0.67887	0.00036341	535.3217619807604	25.181	0.54284	25.181	24.902	25.445	0					41	18	3	0	0	0	0.0073901	1	3975	3975		83.429	23.355	1	321410			36421	2575	21447	21448	43987	43987					0.09757407259985484
QVRPVTEKL	9	Unmodified	_QVRPVTEKL_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.322509765625	2	535.321848	1068.62914	0.12607	6.7488E-05	0.44997	0.00024088	0.57604	0.00030836	535.321874228151	25.218	0.56775	25.162	24.946	25.514	-0.055931					40	19	3	0	0	0	0.0073901	1	3983	3983		83.429	31.799	1	382240			36422	2575	21447	21448	43988	43988					0.09757407259985484
QVRPVTEKL	9	Unmodified	_QVRPVTEKL_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.322021484375	2	535.321848	1068.62914	0.040715	2.1796E-05	0.53558	0.00028671	0.5763	0.0003085	535.3219514546656	25.222	0.79132	25.191	24.922	25.713	-0.031408					51	27	3	0	0	0	0.047483	1	3993	3993		53.833	9.9745	1	338070			36423	2575	21447	21448	43989	43989					0.09757407259985484
QVRREIKE	8	Unmodified	_QVRREIKE_					0	0	0			REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.322021484375	2	529.309272	1056.60399	0.21679	0.00011475	-0.13836	-7.3234E-05	0.078434	4.1516E-05	529.3092379474342	23.147	0.7234	23.059	22.762	23.486	-0.08761					51	25	3	0	0	0	0.4354	1	3297	3297		10.824	0	1	435020	+		36424	14576	21448	21449	43990	43990					0.07795352457424087
QVRSIYSLL	9	Unmodified	_QVRSIYSLL_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8164672851562	2	539.816399	1077.61824	0.19088	0.00010304	0.30784	0.00016618	0.49872	0.00026922	539.8166841984041	61.624	0.63123	61.615	61.377	62.008	-0.0085526					56	22	4	0	0	0	0.0051609	1	15163	15163		72.968	0	1	2634700			36425	8529;12963	21449	21450	43991	43991					0.0825400488570267
QVRTTTVV	8	Unmodified	_QVRTTTVV_					0	0	0			REV__ENSG00000163286|ENST00000295453|ALPG	REV__ENSG00000163286|ENST00000295453|ALPG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2539978027344	2	452.266542	902.51853	-0.12917	-5.8419E-05	-4.2911	-0.0019407	-4.4203	-0.0019992	452.264384020167	14.723	0.33309	14.657	14.563	14.896	-0.066068					18	11	2	0	0	0	0.45015	1	873	873		5.7604	0.52976	1	83430	+		36426	17045	21450	21451	43992	43992					0.06337187271753919
QVRVRGRY	8	Unmodified	_QVRVRGRY_					0	0	0			REV__ENST00000512790.5_1_5:112197073-112227301:+|nuORF	REV__ENST00000512790.5_1_5:112197073-112227301:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7356567382812	2	517.304324	1032.5941	0.71413	0.00036942	-1.828	-0.00094565	-1.1139	-0.00057623	517.3049558662265	50.716	1.3909	50.761	50.136	51.527	0.045441					129	51	5	0	0	0	0.34092	1	11651	11651		13.508	4.9146	1	1247000	+		36427	16608	21451	21452	43993	43993					0.07910209242709243
QVRVRGRY	8	Unmodified	_QVRVRGRY_					0	0	0			REV__ENST00000512790.5_1_5:112197073-112227301:+|nuORF	REV__ENST00000512790.5_1_5:112197073-112227301:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7355346679688	2	517.304324	1032.5941	0.74331	0.00038452	-1.753	-0.00090683	-1.0097	-0.00052231	517.3049723818982	50.759	1.2374	50.768	50.191	51.428	0.0095673					134	46	5	0	0	0	0.34319	1	11656	11656		5.7604	2.4791	1	1453100	+		36428	16608	21451	21452	43994	43994					0.07910209242709243
QVSAKSVVY	9	Unmodified	_QVSAKSVVY_					0	0	0			REV__nc|ENSG00000138376|Q99728-3|BARD1	REV__nc|ENSG00000138376|Q99728-3|BARD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7977600097656	2	490.7742	979.533846	-0.011966	-5.8726E-06	-1.8551	-0.00091043	-1.8671	-0.0009163	490.77318957265857	12.82	0.30346	12.82	12.699	13.003	0					18	10	2	0	0	0	0.24848	1	271	271		13.906	1.6654	1	57518	+		36429	15923	21452	21453	43995	43995					0.04326054068951635
QVSDILYKAK	10	Unmodified	_QVSDILYKAK_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.E6206Gfs*23|1|0.69|ENSG00000183091|chr2:151505500-151505500|T/-|frameshift_variant;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.K4379*|1|0.19|ENSG00000183091|chr2:151565739-151565740|-/A|frameshift_variant;NEB|p.L1554Ffs*23|1|0.04|ENSG00000183091|chr2:151667861-151667862|-/TACAGAAATAAAA|frameshift_variant;NEB|p.K2203Tfs*13|1|0.13|ENSG00000183091|chr2:151655908-151655911|TATT/-|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.83544921875	2	582.834788	1163.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.028	1	12.028	11.528	12.528	0								0	0	0	0.37355	1	4	4		4.897	0	1				36430	7345	21453	21454	43996	43996					0.07974256711622729
QVSKKPPKS	9	Unmodified	_QVSKKPPKS_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8033752441406	2	499.803291	997.59203	0.13	6.4977E-05	-0.36688	-0.00018337	-0.23687	-0.00011839	499.80306947103315	15.525	0.5486	15.525	15.319	15.867	0					37	18	3	0	0	0	0.26168	1	1076	1076		0.45834	0	1	54237			36431	2578	21454	21455	43997	43997					0.09313735714226823
QVSPLTLLK	9	Unmodified	_QVSPLTLLK_					0	0	0		nc|ENSG00000167711|P08697-2|SERPINF2;ENSG00000167711|ENST00000453066|SERPINF2	nc|ENSG00000167711|P08697-2|SERPINF2	nc|ENSG00000167711|P08697-2|SERPINF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8157653808594	2	499.815867	997.617182	0.49837	0.0002491	-0.37025	-0.00018506	0.12813	6.4039E-05	499.815608075605	57.164	0.58226	57.164	56.823	57.405	0					39	21	3	0	0	0	0.25714	1	13793	13793		15.248	0.41021	1	414270			36432	6204	21455	21456	43998	43998					0.1182779051681564
QVSPRITFK	9	Unmodified	_QVSPRITFK_					0	0	0		ENSG00000151229|ENST00000280871|SLC2A13;ENST00000465517.1_1_12:40223765-40265636:-|nuORF	ENSG00000151229|ENST00000280871|SLC2A13	ENSG00000151229|ENST00000280871|SLC2A13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.3175048828125	2	538.316566	1074.61858	0.5451	0.00029343	0.66967	0.0003605	1.2148	0.00065393	538.3168582238433	31.995	0.54881	32.036	31.802	32.351	0.040991					27	18	2	0	0	0	0.03069	1	6061	6061		60.074	17.979	1	358660			36433	4946	21456	21457	43999	43999					0.0842542460554796
QVSPRITFK	9	Unmodified	_QVSPRITFK_					0	0	0		ENSG00000151229|ENST00000280871|SLC2A13;ENST00000465517.1_1_12:40223765-40265636:-|nuORF	ENSG00000151229|ENST00000280871|SLC2A13	ENSG00000151229|ENST00000280871|SLC2A13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	538.316566	1074.61858	0.61757	0.00033245	0.17306	9.316E-05	0.79063	0.00042561	538.3165608457451	32.06	0.47742	32.06	31.829	32.307	0	0.0043524	-0.00019569	NaN	60.074	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347200			36434	4946	21456	21457							0.0842542460554796
QVSVPVPAE	9	Unmodified	_QVSVPVPAE_					0	0	0			REV__ENSG00000119333|ENST00000372715|DYNC2I2	REV__ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7872314453125	2	463.2531	924.491647	0.4086	0.00018928	-1.5129	-0.00070087	-1.1043	-0.00051159	463.2535039757887	77.542	0.38469	77.597	77.456	77.841	0.055412					19	13	2	0	0	0	0.25323	1	19995	19995		10.074	0	1	58094	+		36435	15037	21457	21458	44000	44000					0.02638078660561405
QVTDFGFAK	9	Unmodified	_QVTDFGFAK_					0	0	0		PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;nc|ENSG00000072062|P17612-2|PRKACA;ENSG00000072062|ENST00000308677|PRKACA;ENST00000587533.1_1_19:14208360-14208546:-|nuORF;nc|ENSG00000142875|P22694-8|PRKACB;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000142875|P22694|PRKACB;ENSG00000165059|ENST00000377276|PRKACG;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB;ENSG00000142875|ENST00000370685|PRKACB	PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7583312988281	2	506.758549	1011.50255	0.37299	0.00018902	-0.10405	-5.2727E-05	0.26894	0.00013629	506.75833994497333	44.311	0.5407	44.311	44.065	44.605	0					40	19	3	0	0	0	0.11201	1	9828	9828		36.506	11.107	1	733650			36436	968	21458	21459	44001	44001					-0.002745189651477631
QVTDFGFAK	9	Unmodified	_QVTDFGFAK_					0	0	0		PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;nc|ENSG00000072062|P17612-2|PRKACA;ENSG00000072062|ENST00000308677|PRKACA;ENST00000587533.1_1_19:14208360-14208546:-|nuORF;nc|ENSG00000142875|P22694-8|PRKACB;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000142875|P22694|PRKACB;ENSG00000165059|ENST00000377276|PRKACG;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB;ENSG00000142875|ENST00000370685|PRKACB	PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	506.758549	1011.50255	0.35178	0.00017827	0.19776	0.00010022	0.54953	0.00027848	506.7583932492701	44.03	0.58253	44.107	43.89	44.472	0.077515	-0.056298	0.00021284	NaN	36.506	40	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	913820			36437	968	21458	21459							-0.002745189651477631
QVTDFGFAK	9	Unmodified	_QVTDFGFAK_					0	0	0		PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant;ENST00000536649.5_1_19:14208073-14223129:-|nuORF;nc|ENSG00000072062|P17612-2|PRKACA;ENSG00000072062|ENST00000308677|PRKACA;ENST00000587533.1_1_19:14208360-14208546:-|nuORF;nc|ENSG00000142875|P22694-8|PRKACB;nc|ENSG00000142875|P22694-10|PRKACB;nc|ENSG00000142875|P22694-4|PRKACB;nc|ENSG00000142875|P22694-3|PRKACB;nc|ENSG00000142875|P22694|PRKACB;ENSG00000165059|ENST00000377276|PRKACG;nc|ENSG00000142875|P22694-5|PRKACB;nc|ENSG00000142875|P22694-7|PRKACB;nc|ENSG00000142875|P22694-6|PRKACB;nc|ENSG00000142875|P22694-9|PRKACB;ENSG00000142875|ENST00000370685|PRKACB	PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	PRKACA|p.K286Rfs*12|1|0.04|ENSG00000072062|chr19:14093689-14093702|TTGACCCCATTCTT/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.758549	1011.50255	0.2726	0.00013814	-0.037023	-1.8762E-05	0.23557	0.00011938	506.7584718295493	43.989	0.56111	44.073	43.866	44.427	0.083996	-0.090884	-2.5117E-05	NaN	36.506	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	977730			36438	968	21458	21459							-0.002745189651477631
QVTGLQRF	8	Unmodified	_QVTGLQRF_					0	0	0			REV__COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	REV__COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.246826171875	2	474.766709	947.518865	0.47685	0.00022639	-0.77108	-0.00036608	-0.29423	-0.00013969	474.76643726005034	20.83	0.55677	20.777	20.448	21.005	-0.05291					26	19	2	0	0	0	0.34272	1	2626	2626		7.9102	0	1	37792	+		36439	13240	21459	21460	44002	44002					0.04300606991614586
QVTGSESIE	9	Unmodified	_QVTGSESIE_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.91278076171875	2	475.227279	948.440005	0.49793	0.00023663	-1.7511	-0.00083217	-1.2532	-0.00059554	475.2266485358036	21.208	0.39806	21.097	20.836	21.234	-0.11003					20	13	2	0	0	0	0.25779	1	2738	2738		6.2058	0	1	62596			36440	615	21460	21461	44003	44003					-0.03627709824002068
QVTHGEDVFVQ	11	Unmodified	_QVTHGEDVFVQ_					0	0	0			REV__nc|ENSG00000169783|Q96FE5-2|LINGO1	REV__nc|ENSG00000169783|Q96FE5-2|LINGO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.2763671875	2	629.806759	1257.59897	0.2349	0.00014794	3.5954	0.0022644	3.8303	0.0024124	629.8086169764088	59.382	0.48753	59.382	59.162	59.65	0					26	16	2	0	0	0	0.32996	1	14439	14439		8.1555	1.4324	1	227250	+		36441	17540	21461	21462	44004	44004					-0.019529961958596687
QVTNEIVTL	9	Unmodified	_QVTNEIVTL_					0	0	0		nc|ENSG00000120156|Q02763-3|TEK;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK	nc|ENSG00000120156|Q02763-3|TEK	nc|ENSG00000120156|Q02763-3|TEK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8030090332031	2	508.784764	1015.55498	-0.090429	-4.6009E-05	2.4043	0.0012233	2.3139	0.0011773	508.78592915002633	28.099	0.35899	28.099	27.992	28.351	0.00046921					17	12	2	0	0	0	0.20626	1	4922	4922		22.736	3.4793	1	117920			36442	2930	21462	21463	44005	44005					0.04782019377819324
QVTRLTLLSE	10	Unmodified	_QVTRLTLLSE_					0	0	0		ENSG00000242173|ENST00000219409|ARHGDIG	ENSG00000242173|ENST00000219409|ARHGDIG	ENSG00000242173|ENST00000219409|ARHGDIG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3377075195312	2	580.337695	1158.66084	0.24705	0.00014337	-0.6307	-0.00036602	-0.38365	-0.00022265	580.3369735597896	91.658	0.90181	91.658	91.482	92.383	0					95	65	2	0	0	0	0.38773	1	24376	24376		5.7319	0	1	232230			36443	8541	21463	21464	44006	44006					0.08785355223267288
QVTRTLDK	8	Unmodified	_QVTRTLDK_					0	0	0			REV__ENSG00000153266|ENST00000283268|FEZF2	REV__ENSG00000153266|ENST00000283268|FEZF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7897644042969	2	480.777274	959.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.595	1	16.533	16.033	17.033	-0.062534								0	0	0	0.37277	1	1374	1374		4.3292	0	1		+		36444	16621	21464	21465	44007	44007					0.05860572300480271
QVTSVFGLPF	10	Unmodified	_QVTSVFGLPF_					0	0	0		nc|ENSG00000196266|Q5JRS4|OR10J3	nc|ENSG00000196266|Q5JRS4|OR10J3	nc|ENSG00000196266|Q5JRS4|OR10J3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.2832641601562	2	547.797675	1093.5808	0.4644	0.0002544	1.5166	0.00083079	1.981	0.0010852	547.7988867679467	43.176	0.21756	43.26	43.166	43.384	0.083992					11	7	2	0	0	0	0.30958	1	9464	9464		19.257	0	1	188930			36445	12894	21465	21466	44008	44008					0.03774913620077314
QVTTAENLK	9	Unmodified	_QVTTAENLK_					0	0	0		ENSG00000164815|ENST00000297431|ORC5;nc|ENSG00000164815|O43913-2|ORC5;ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENSG00000164815|ENST00000297431|ORC5;ENST00000485726.1_1_7:103828364-103848439:-|nuORF	ENST00000485726.1_1_7:103828364-103848439:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7618408203125	2	502.274564	1002.53457	0.14065	7.0644E-05	0.16625	8.3504E-05	0.3069	0.00015415	502.2746372239771	17.735	1.0691	17.617	17.289	18.358	-0.11739					71	36	3	0	0	0	0.26612	1	1822	1822		13.906	0	1	1112400			36446	11094;5878	21466	21467	44009	44009					0.03340848718005418
QVTVPITL	8	Unmodified	_QVTVPITL_					0	0	0		ENST00000393132.2_1_7:134343134-134343299:+|nuORF	ENST00000393132.2_1_7:134343134-134343299:+|nuORF	ENST00000393132.2_1_7:134343134-134343299:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.251953125	2	435.768386	869.522219	0.091672	3.9948E-05	-0.54843	-0.00023899	-0.45675	-0.00019904	435.7680694027467	71.867	0.59581	71.923	71.628	72.224	0.05658					33	21	2	0	0	0	0.33245	1	18261	18261		19.439	0	1	125580			36447	10040	21467	21468	44010	44010					0.08223857045607019
QVVCFLHIS	9	Unmodified	_QVVCFLHIS_					0	0	0		nc|ENSG00000145743|Q9UF56-2|FBXL17	nc|ENSG00000145743|Q9UF56-2|FBXL17	nc|ENSG00000145743|Q9UF56-2|FBXL17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2774047851562	2	523.278595	1044.54264	0.11561	6.0498E-05	-2.3444	-0.0012268	-2.2288	-0.0011663	523.2775614714985	12.931	0.3418	12.832	12.7	13.042	-0.099291					24	11	3	0	0	0	0.31038	1	293	293		7.2892	1.5574	1	82776			36448	12743	21468	21469	44011	44011					0.02214704433777115
QVVEPPRR	8	Unmodified	_QVVEPPRR_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.79779052734375	2	490.785433	979.556313	0.024133	1.1844E-05	0.040872	2.0059E-05	0.065005	3.1903E-05	490.7854226847696	12.861	0.28307	12.762	12.611	12.894	-0.099291					17	9	3	0	0	0	0.44389	1	288	288		7.9102	0	1	43508	+		36449	23048	21469	21470	44012	44012					0.06571698257232583
QVVEPPRR	8	Unmodified	_QVVEPPRR_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	490.785433	979.556313	-0.010367	-5.088E-06	0.05761	2.8274E-05	0.047243	2.3186E-05	490.7855219338827	12.816	0.23131	12.816	12.669	12.9	0	0.02369	-1.2287E-05	NaN	7.9102	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42004	+		36450	23048	21469	21470							0.06571698257232583
QVVEPPRR	8	Unmodified	_QVVEPPRR_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	490.785433	979.556313	0.024133	1.1844E-05	0.040872	2.0059E-05	0.065005	3.1903E-05	490.7854226847696	12.861	0.28307	12.762	12.611	12.894	-0.099291	-0.030373	-2.8717E-05	NaN	7.9102	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43508	+		36451	23048	21469	21470							0.06571698257232583
QVVFWAGILQ	10	Unmodified	_QVVFWAGILQ_					0	0	0		ENST00000418251.6_1_2:113931616-113943025:+|nuORF;PSD4|p.K506Rfs*13|1|0.18|ENSG00000125637|chr2:113186140-113186140|A/-|frameshift_variant;nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4	ENST00000418251.6_1_2:113931616-113943025:+|nuORF	ENST00000418251.6_1_2:113931616-113943025:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.8406372070312	2	580.826766	1159.63898	0.066731	3.8759E-05	-0.90062	-0.00052311	-0.83389	-0.00048435	580.8262205466281	29.7	0.34374	29.713	29.536	29.88	0.013474					32	11	4	0	0	0	0.39935	1	5308	5308		3.5965	0.31518	1	404370			36452	3219	21470	21471	44013	44013					0.06554595265356511
QVVHKRLH	8	Unmodified	_QVVHKRLH_					0	0	0			REV__nc|ENSG00000178150|Q8NC26-2|ZNF114	REV__nc|ENSG00000178150|Q8NC26-2|ZNF114	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2823181152344	2	508.809242	1015.60393	0.083815	4.2646E-05	-0.27746	-0.00014117	-0.19365	-9.8529E-05	508.8090807880415	23.029	0.80444	23.029	22.675	23.48	0					55	27	3	0	0	0	0.34185	1	3337	3337		10.183	0	1	124480	+		36453	18020	21471	21472	44014	44014					0.09675397248076933
QVVIERRP	8	Unmodified	_QVVIERRP_					0	0	0			REV__ENST00000528167.1_1_4:8442537-8448315:+|nuORF	REV__ENST00000528167.1_1_4:8442537-8448315:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.31341552734375	2	498.801083	995.587613	0.34665	0.00017291	-0.35075	-0.00017495	-0.0040996	-2.0449E-06	498.80114221650166	24.102	2.2077	24.03	23.368	25.575	-0.072559					233	76	6	0	0	0	0.33441	1	3818	3818		26.884	6.43	1	5440000	+		36454	16694	21472	21473	44015	44015					0.08964271291324621
QVVKEQLMHQ	10	Unmodified	_QVVKEQLMHQ_					0	0	0		nc|ENSG00000138336|Q8NFU7-2|TET1;ENSG00000138336|ENST00000373644|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.329833984375	2	620.329347	1238.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.965	1	99.965	99.465	100.46	0								0	0	0	0.37739	1	26726	26726		3.2813	0.54611	1				36455	4138	21473	21474	44016	44016					0.03436531065676718
QVVKEQLMHQ	10	Unmodified	_QVVKEQLMHQ_					0	0	0		nc|ENSG00000138336|Q8NFU7-2|TET1;ENSG00000138336|ENST00000373644|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3297729492188	2	620.329347	1238.64414	-0.10978	-6.81E-05	1.1182	0.00069368	1.0085	0.00062558	620.3281207881291	100.15	0.77623	100.19	99.714	100.49	0.039001					134	101	2	0	0	0	0.40106	1	26792	26792		3.2813	0.54611	1	118720			36456	4138	21473	21474	44017	44017					0.03436531065676718
QVVKEQLMHQ	10	Unmodified	_QVVKEQLMHQ_					0	0	0		nc|ENSG00000138336|Q8NFU7-2|TET1;ENSG00000138336|ENST00000373644|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3282470703125	2	620.329347	1238.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.52	1	101.55	101.05	102.05	0.027206								0	0	0	0.37044	1	27076	27076		6.2058	0.9089	1				36457	4138	21473	21474	44018	44018					0.03436531065676718
QVVKEQLMHQ	10	Unmodified	_QVVKEQLMHQ_					0	0	0		nc|ENSG00000138336|Q8NFU7-2|TET1;ENSG00000138336|ENST00000373644|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.32763671875	2	620.329347	1238.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.72	1	101.75	101.25	102.25	0.027206								0	0	0	0.37739	1	27124	27124		3.2813	0.28607	1				36458	4138	21473	21474	44019	44019					0.03436531065676718
QVVKEQLMHQ	10	Unmodified	_QVVKEQLMHQ_					0	0	0		nc|ENSG00000138336|Q8NFU7-2|TET1;ENSG00000138336|ENST00000373644|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3287963867188	2	620.329347	1238.64414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.03	1	102.05	101.55	102.55	0.016685								0	0	0	0.37044	1	27188	27188		6.2058	0.9089	1				36459	4138	21473	21474	44020	44020					0.03436531065676718
QVVKNTLKN	9	Unmodified	_QVVKNTLKN_					0	0	0			REV__ENSG00000164190|ENST00000282516|NIPBL	REV__ENSG00000164190|ENST00000282516|NIPBL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.3285522460938	2	522.314023	1042.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.585	1	89.676	89.176	90.176	0.090569								0	0	0	0.2489	1	23706	23706		6.7232	0.36906	1		+		36460	17136	21474	21475	44021	44021					0.0938912074293512
QVVMKPVI	8	Unmodified	_QVVMKPVI_					0	0	0		ENST00000569205.5_2_15:55664113-55664218:-|nuORF	ENST00000569205.5_2_15:55664113-55664218:-|nuORF	ENST00000569205.5_2_15:55664113-55664218:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.26434326171875	2	457.280606	912.546659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.168	1	73.222	72.722	73.722	0.053833								0	0	0	0.37078	1	18679	18679		5.2307	0.47466	1				36461	12008	21475	21476	44022	44022					0.08688793927478855
QVVMKPVI	8	Unmodified	_QVVMKPVI_					0	0	0		ENST00000569205.5_2_15:55664113-55664218:-|nuORF	ENST00000569205.5_2_15:55664113-55664218:-|nuORF	ENST00000569205.5_2_15:55664113-55664218:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2643127441406	2	457.280606	912.546659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.198	1	73.252	72.752	73.752	0.053833								0	0	0	0.37078	1	18688	18688		5.2307	0.47466	1				36462	12008	21475	21476	44023	44023					0.08688793927478855
QVVNNKTTEL	10	Unmodified	_QVVNNKTTEL_					0	0	0			REV__ENST00000553115.1_1_12:55516583-55517273:-|nuORF	REV__ENST00000553115.1_1_12:55516583-55517273:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.32421875	2	573.311677	1144.6088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.13	1	101.15	100.65	101.65	0.027206								0	0	0	0.37581	1	26979	26979		3.9444	0	1		+		36463	13479	21476	21477	44024	44024					0.0422819180953411
QVVPIVFAL	9	Unmodified	_QVVPIVFAL_					0	0	0			REV__ENST00000546058.1_1_12:132626393-132626917:-|nuORF	REV__ENST00000546058.1_1_12:132626393-132626917:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8135681152344	2	493.307678	984.600803	0.05375	2.6515E-05	-4.1117	-0.0020283	-4.0579	-0.0020018	493.3051491873414	13.075	0.11661	12.976	12.894	13.011	-0.099291					5	3	2	0	0	0	0.25811	1	303	303		5.2307	0	1	9422.2	+		36464	18361	21477	21478	44025	44025					0.10788709350697445
QVVPWPLQ	8	Unmodified	_QVVPWPLQ_					0	0	0			REV__ENST00000542466.2_1_12:58120838-58121579:+|nuORF	REV__ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7897033691406	2	483.774003	965.533452	0.079694	3.8554E-05	-3.902	-0.0018877	-3.8224	-0.0018492	483.7723389440734	28.537	0.51351	28.537	28.36	28.873	0					21	17	2	0	0	0	0.34353	1	5078	5078		4.756	0.42677	1	55961	+		36465	22138	21478	21479	44026	44026					0.04930679139749827
QVVPWPLQ	8	Unmodified	_QVVPWPLQ_					0	0	0			REV__ENST00000542466.2_1_12:58120838-58121579:+|nuORF	REV__ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	483.774003	965.533452	0.093182	4.5079E-05	-4.1196	-0.001993	-4.0264	-0.0019479	483.77209903990496	28.541	0.36077	28.537	28.359	28.72	-0.0042572	-9.9384E-05	-4.4254E-05	NaN	7.9102	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74621	+		36466	22138	21478	21479							0.04930679139749827
QVVRKVAG	8	Unmodified	_QVVRKVAG_					0	0	0		ENSG00000102743|ENST00000338625|SLC25A15;ENST00000478827.1_1_13:41367302-41376286:+|nuORF	ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.76031494140625	2	428.771794	855.529036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.75	1	86.75	86.25	87.25	0								0	0	0	0.36169	1	22846	22846		9.3474	0	1				36467	1777	21479	21480	44027	44027					0.0954921471684429
QVVRRAPEP	9	Unmodified	_QVVRRAPEP_					0	0	0		ENSG00000166199|ENST00000302708|ALKBH3;ENST00000533200.5_1_11:43904193-43919192:+|nuORF;nc|ENSG00000166199|Q96Q83-2|ALKBH3	ENSG00000166199|ENST00000302708|ALKBH3	ENSG00000166199|ENST00000302708|ALKBH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.302734375	2	526.30399	1050.59343	0.4519	0.00023784	-2.9886	-0.0015729	-2.5367	-0.0013351	526.3017703251498	106.67	0.15189	106.68	106.62	106.77	0.0050507					44	22	3	0	0	0	0.28674	1	28218	28218		10.824	1.4765	1	2181100			36468	6043	21480	21481	44028	44028					0.07015369802979876
QVVRRAPEP	9	Unmodified	_QVVRRAPEP_					0	0	0		ENSG00000166199|ENST00000302708|ALKBH3;ENST00000533200.5_1_11:43904193-43919192:+|nuORF;nc|ENSG00000166199|Q96Q83-2|ALKBH3	ENSG00000166199|ENST00000302708|ALKBH3	ENSG00000166199|ENST00000302708|ALKBH3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	526.30399	1050.59343	0.23876	0.00012566	-2.4059	-0.0012663	-2.1672	-0.0011406	526.3020207410863	106.69	0.1966	106.68	106.58	106.77	-0.0060425	0.0031574	0.00025491	NaN	10.824	57	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2442000			36469	6043	21480	21481							0.07015369802979876
QVVSEQTLVQ	10	Unmodified	_QVVSEQTLVQ_					0	0	0		ENSG00000140678|ENST00000268296|ITGAX;ENST00000571644.1_1_16:31374636-31388147:+|nuORF	ENSG00000140678|ENST00000268296|ITGAX	ENSG00000140678|ENST00000268296|ITGAX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.304931640625	2	565.806228	1129.5979	0.29205	0.00016524	-0.78788	-0.00044579	-0.49583	-0.00028054	566.305898293309	46.273	0.70207	46.333	46.015	46.717	0.059837					76	25	4	0	0	0	0.29092	1	10421	10421		21.537	1.0834	1	1459200			36470	4326	21481	21482	44029	44029					0.038287894352379226
QVVSPFSRGK	10	Unmodified	_QVVSPFSRGK_					0	0	0		NFX1|p.A397Efs*25|1|0.03|ENSG00000086102|chr9:33301418-33301419|-/AGAAGAATCCAAA|frameshift_variant;NFX1|p.S556Kfs*22|1|0.03|ENSG00000086102|chr9:33318808-33318809|-/AAAACAAAACGTTAGTAACATGTAT|frameshift_variant;nc|ENSG00000086102|Q12986-3|NFX1;nc|ENSG00000086102|Q12986-2|NFX1;ENST00000379521.8_2_9:33290558-33364805:+|nuORF;ENSG00000086102|ENST00000379540|NFX1	NFX1|p.A397Efs*25|1|0.03|ENSG00000086102|chr9:33301418-33301419|-/AGAAGAATCCAAA|frameshift_variant	NFX1|p.A397Efs*25|1|0.03|ENSG00000086102|chr9:33301418-33301419|-/AGAAGAATCCAAA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7944946289062	2	552.811648	1103.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.67	1	34.67	34.17	35.17	0								0	0	0	0.35954	1	6861	6861		10.8	0.72558	1				36471	1277	21482	21483	44030	44030					0.061082366001983246
QVVYKRITTQ	10	Unmodified	_QVVYKRITTQ_					0	0	0			REV__nc|ENSG00000124429|Q8WVV4-3|POF1B	REV__nc|ENSG00000124429|Q8WVV4-3|POF1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.8615112304688	2	618.358962	1234.70337	0.10699	6.6161E-05	0.27004	0.00016698	0.37704	0.00023314	618.8614937254433	94.022	1.2472	94.022	93.187	94.434	0					178	106	3	0	0	0	0.41168	1	25020	25020		1.3295	0	1	150060	+		36472	15233	21483	21484	44031	44031					0.0954075035151618
QVWKMRFRKTG	11	Unmodified	_QVWKMRFRKTG_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7;ENST00000494348.1_1_19:7974966-7975513:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2636413574219	3	479.602962	1435.78706	0.20836	9.9929E-05	1.7296	0.00082952	1.9379	0.00092945	479.6036024009749	112.18	0.19089	112.19	112.14	112.33	0.0131					34	24	2	0	0	0	0.33348	1	29204	29204		0.40827	0.24894	1	48590			36473	1075	21484	21485	44032	44032					0.08659583247549563
QVYGFVRACL	10	Unmodified	_QVYGFVRACL_					0	0	0		nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT;nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT	nc|ENSG00000164362|O14746-4|TERT	nc|ENSG00000164362|O14746-4|TERT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.8250732421875	2	578.302601	1154.59065	-0.10343	-5.9813E-05	3.104	0.001795	3.0006	0.0017352	578.304170587814	13.708	0.32998	13.642	13.417	13.747	-0.066068					21	11	3	0	0	0	0.32132	1	473	473		1.4819	0.15237	1	51033			36474	5839	21485	21486	44033	44033					0.019537783538225995
QVYGFVRACL	10	Unmodified	_QVYGFVRACL_					0	0	0		nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT;nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT	nc|ENSG00000164362|O14746-4|TERT	nc|ENSG00000164362|O14746-4|TERT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	578.302601	1154.59065	-0.076598	-4.4297E-05	3.2846	0.0018995	3.208	0.0018552	578.304215228326	13.574	0.37537	13.574	13.365	13.74	0	-0.022423	0.00017691	NaN	1.4819	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58035			36475	5839	21485	21486							0.019537783538225995
QVYHTFLRIA	10	Unmodified	_QVYHTFLRIA_					0	0	0		ENSG00000181045|ENST00000361193|SLC26A11;ENST00000571564.5_1_17:78199638-78210723:+|nuORF	ENSG00000181045|ENST00000361193|SLC26A11	ENSG00000181045|ENST00000361193|SLC26A11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.3475952148438	2	624.348397	1246.68224	0.32277	0.00020152	-0.17816	-0.00011124	0.1446	9.0282E-05	624.3481930711725	67.421	0.4513	67.421	67.222	67.673	0					37	15	3	0	0	0	0.34795	1	16908	16908		13.042	0.80181	1	173320			36476	7220	21486	21487	44034	44034					0.06876785042663869
QVYHTFLRIA	10	Unmodified	_QVYHTFLRIA_					0	0	0		ENSG00000181045|ENST00000361193|SLC26A11;ENST00000571564.5_1_17:78199638-78210723:+|nuORF	ENSG00000181045|ENST00000361193|SLC26A11	ENSG00000181045|ENST00000361193|SLC26A11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.34814453125	2	624.348397	1246.68224	0.035404	2.2104E-05	-0.18812	-0.00011745	-0.15271	-9.5347E-05	624.3482474264937	67.279	0.42072	67.357	67.183	67.603	0.078041					26	14	2	0	0	0	0.34795	1	16904	16904		13.042	0	1	210960			36477	7220	21486	21487	44035	44035					0.06876785042663869
QVYHTFLRIA	10	Unmodified	_QVYHTFLRIA_					0	0	0		ENSG00000181045|ENST00000361193|SLC26A11;ENST00000571564.5_1_17:78199638-78210723:+|nuORF	ENSG00000181045|ENST00000361193|SLC26A11	ENSG00000181045|ENST00000361193|SLC26A11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3480834960938	2	624.348397	1246.68224	0.061896	3.8645E-05	0.27268	0.00017024	0.33457	0.00020889	624.3484554568595	67.459	0.58426	67.443	67.115	67.7	-0.016296					45	19	3	0	0	0	0.34795	1	16951	16951		13.042	0.80181	1	285280			36478	7220	21486	21487	44036	44036					0.06876785042663869
QVYIEKYI	8	Unmodified	_QVYIEKYI_					0	0	0		NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7552490234375	2	528.292225	1054.5699	0.81534	0.00043074	-0.7025	-0.00037112	0.11285	5.9616E-05	528.2920556200185	56.351	0.8217	56.429	56.247	57.068	0.078671					53	30	3	0	0	0	0.33993	1	13552	13552		7.2892	0	1	630250			36479	4584	21487	21488	44037	44037					0.044795112457904906
QVYISSLALLK	11	Unmodified	_QVYISSLALLK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	617.8739624023438	2	617.873914	1233.73327	0.49642	0.00030673	-0.2422	-0.00014965	0.25422	0.00015708	617.8736704403437	65.797	0.63441	65.797	65.577	66.211	0					54	22	3	0	0	0	0.046483	2	16427	16427;16476		73.196	38.264	1	1109500			36480	2621	21488	21489	44038;44039	44038					0.1257568929684112
QVYISSLALLK	11	Unmodified	_QVYISSLALLK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	617.8738403320312	2	617.873914	1233.73327	0.27191	0.00016801	-0.024407	-1.508E-05	0.24751	0.00015293	617.8737851102828	65.689	0.67724	65.777	65.547	66.224	0.088882					61	24	4	0	0	0	0.0033936	2	16373	16373;16429		108.26	42.788	1	1202400			36481	2621	21488	21489	44040;44041	44040					0.1257568929684112
QVYISSLALLK	11	Unmodified	_QVYISSLALLK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	617.8738403320312	2	617.873914	1233.73327	0.36648	0.00022644	-0.21711	-0.00013414	0.14938	9.2296E-05	617.8736739497722	65.799	0.60968	65.787	65.586	66.195	-0.011337					50	21	3	0	0	0	0.028371	2	16421	16421;16481		79.427	37.587	1	1137900			36482	2621	21488	21489	44042;44043	44042					0.1257568929684112
QVYRGALQK	9	Unmodified	_QVYRGALQK_					0	0	0		ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8060302734375	2	531.806365	1061.59818	0.37328	0.00019851	-0.23048	-0.00012257	0.1428	7.5942E-05	531.8062030383294	18.219	0.62795	18.219	17.96	18.588	0					51	21	4	0	0	0	0.25314	1	1925	1925		15.847	1.0089	1	345200			36483	5317	21489	21490	44044	44044					0.06984253945756791
QVYRGALQK	9	Unmodified	_QVYRGALQK_					0	0	0		ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8062744140625	2	531.806365	1061.59818	0.18021	9.5839E-05	0.049074	2.6098E-05	0.22929	0.00012194	531.8062336216575	18.331	0.69266	18.214	17.985	18.678	-0.11739					59	23	4	0	0	0	0.027237	1	1914	1914		61.357	3.8861	1	406180			36484	5317	21489	21490	44045	44045					0.06984253945756791
QVYRGALQK	9	Unmodified	_QVYRGALQK_					0	0	0		ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8062744140625	2	531.806365	1061.59818	0.17068	9.077E-05	-0.048933	-2.6023E-05	0.12175	6.4747E-05	531.80630711074	18.352	0.6486	18.293	18.059	18.707	-0.058174					56	22	5	0	0	0	0.015402	2	1926	1874;1926		71.134	15.377	1	436460			36485	5317	21489	21490	44046;44047	44047					0.06984253945756791
QVYRRHFLK	9	Unmodified	_QVYRRHFLK_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.9036865234375	3	416.243763	1245.70946	-0.22849	-9.5107E-05	0.33057	0.0001376	0.10208	4.249E-05	416.243944827812	19.304	0.89885	19.304	19.006	19.905	0					77	31	4	0	0	0	0.22935	1	2212	2212		19.362	7.1872	1	466270			36486	8137	21490	21491	44048	44048					0.09643313373703677
QVYRRHFLK	9	Unmodified	_QVYRRHFLK_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9036865234375	3	416.243763	1245.70946	0.17926	7.4617E-05	-0.10788	-4.4904E-05	0.071383	2.9713E-05	416.2437286954563	19.522	1.0103	19.406	19.116	20.126	-0.11592					76	34	3	0	0	0	0.23612	1	2266	2266		18.373	7.5736	1	435920			36487	8137	21490	21491	44049	44049					0.09643313373703677
QVYRRHFLK	9	Unmodified	_QVYRRHFLK_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.9036560058594	3	416.243763	1245.70946	0.17369	7.2298E-05	-0.027594	-1.1486E-05	0.1461	6.0812E-05	416.24374035348745	19.434	0.98225	19.378	19.08	20.062	-0.055693					80	34	4	0	0	0	0.22935	1	2250	2250		19.362	0	1	516790			36488	8137	21490	21491	44050	44050					0.09643313373703677
QWAKQLCVI	9	Unmodified	_QWAKQLCVI_					0	0	0		nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2;AFAP1L2|p.L204Cfs*15|1|0.31|ENSG00000169129|chr10:114315563-114315563|A/-|frameshift_variant	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.8160400390625	2	544.799694	1087.58484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.585	1	12.488	11.988	12.988	-0.096607								0	0	0	0.264	1	172	172		1.8442	0	1				36489	6329	21491	21492	44051	44051					0.04454679842137921
QWDFENLF	8	Unmodified	_QWDFENLF_					0	0	0		ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.759033203125	2	549.748182	1097.48181	0.63925	0.00035143	1.0586	0.00058195	1.6978	0.00093338	549.7488895006572	79.018	1.1223	79.076	78.39	79.513	0.058594					68	47	2	0	0	0	0.44842	1	20532	20532		6.3541	6.3541	1	75738			36490	1182	21492	21493	44052	44052					-0.06303109344821678
QWELMLKRL	9	Unmodified	_QWELMLKRL_					0	0	0			REV__nc|ENSG00000130396|P55196-2|AFDN	REV__nc|ENSG00000130396|P55196-2|AFDN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.84765625	2	608.847176	1215.6798	0.65262	0.00039734	-0.21685	-0.00013203	0.43577	0.00026532	608.8470023713252	83.992	0.8848	83.992	83.279	84.163	0					112	34	4	0	0	0	0.28674	1	21969	21969		10.824	0.75	1	2644200	+		36491	15455	21493	21494	44053	44053					0.08058613313346541
QWFALHPF	8	Unmodified	_QWFALHPF_					0	0	0			REV__ENSG00000003056|ENST00000000412|M6PR	REV__ENSG00000003056|ENST00000000412|M6PR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3007202148438	2	523.266345	1044.51814	0.59276	0.00031017	-1.5717	-0.00082241	-0.97892	-0.00051224	523.2654283066624	82.516	0.4172	82.516	82.262	82.679	0					21	15	2	0	0	0	0.34218	1	21469	21469		5.2307	0.47466	1	87892	+		36492	13322	21494	21495	44054	44054					-0.0023418765745191195
QWGWLLPG	8	Unmodified	_QWGWLLPG_					0	0	0		nc|ENSG00000164458|O15178|TBXT	nc|ENSG00000164458|O15178|TBXT	nc|ENSG00000164458|O15178|TBXT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7398986816406	2	478.75307	955.491587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.802	1	78.802	78.302	79.302	0								0	0	0	0.35779	1	20405	20405		11.114	1.767	1				36493	12803	21495	21496	44055	44055					0.012061234512430019
QWLRHRATQ	9	Unmodified	_QWLRHRATQ_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8557739257812	2	598.325788	1194.63702	0.35999	0.00021539	-1.1758	-0.00070353	-0.81583	-0.00048813	598.3251684359157	96.466	0.5689	96.536	96.252	96.821	0.070465					106	57	3	0	0	0	0.25622	1	25724	25724		3.9444	0	1	113840			36494	5991	21496	21497	44056	44056					0.047489793001204816
QWNQIAQRR	9	Unmodified	_QWNQIAQRR_					0	0	0			REV__ENSG00000163013|ENST00000520530|FBXO41	REV__ENSG00000163013|ENST00000520530|FBXO41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3238525390625	2	600.323245	1198.63194	0.28669	0.00017211	0.53061	0.00031854	0.8173	0.00049065	600.3236100644904	105.64	0.94421	105.63	105.26	106.21	-0.0027847					360	136	3	0	0	0	0.34681	1	28068	28068		1.8442	0.19162	1	538230	+		36495	17031	21497	21498	44057	44057					0.04056675437504964
QWNQIAQRR	9	Unmodified	_QWNQIAQRR_					0	0	0			REV__ENSG00000163013|ENST00000520530|FBXO41	REV__ENSG00000163013|ENST00000520530|FBXO41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.32421875	2	600.323245	1198.63194	0.32306	0.00019394	0.36932	0.00022171	0.69238	0.00041565	600.3235506801055	105.81	0.84837	105.81	105.45	106.3	0.0031815					283	122	3	0	0	0	0.31038	3	28003	27965;28003;28115		7.2892	3.9444	1	445550	+		36496	17031	21497	21498	44058;44059;44060	44059					0.04056675437504964
QWNQIAQRR	9	Unmodified	_QWNQIAQRR_					0	0	0			REV__ENSG00000163013|ENST00000520530|FBXO41	REV__ENSG00000163013|ENST00000520530|FBXO41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3242797851562	2	600.323245	1198.63194	0.32347	0.00019418	1.2593	0.00075601	1.5828	0.0009502	600.323842300559	105.46	0.055862	105.46	105.43	105.48	0.0031738					10	7	2	0	0	0	0.25938	1	27965	27965		4.3292	0.73274	1	87446	+		36497	17031	21497	21498	44061	44061					0.04056675437504964
QWNQIAQRR	9	Unmodified	_QWNQIAQRR_					0	0	0			REV__ENSG00000163013|ENST00000520530|FBXO41	REV__ENSG00000163013|ENST00000520530|FBXO41	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	600.323245	1198.63194	0.074402	4.4666E-05	0.71011	0.0004263	0.78451	0.00047096	600.3237614725521	105.85	1.0519	105.85	105.27	106.32	0	0.088943	0.00018837	NaN	7.2892	362	150	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	527220	+		36498	17031	21497	21498							0.04056675437504964
QWNRKINH	8	Unmodified	_QWNRKINH_					0	0	0		nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	nc|ENSG00000116852|O75037-3|KIF21B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7820434570312	2	548.293956	1094.57336	0.061706	3.3833E-05	3.8064	0.002087	3.8681	0.0021209	548.296219971783	12.674	0.35975	12.607	12.491	12.851	-0.067496					16	11	2	0	0	0	0.34437	1	165	165		0.69038	0	1	57311			36499	2758	21498	21499	44062	44062					0.029856188630446923
QWPPDPPLHF	10	Unmodified	_QWPPDPPLHF_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	617.3057250976562	2	617.306198	1232.59784	0.13271	8.1924E-05	-0.079794	-4.9258E-05	0.052917	3.2666E-05	617.3059375794412	70.943	2.5101	71.004	68.953	71.463	0.060783					166	89	2	0	0	0	0.2811	2	17643	17643;17703		22.736	12.586	1	446270			36500	2697	21499	21500	44063;44064	44063					-0.009151657741313102
QWPPDPPLHF	10	Unmodified	_QWPPDPPLHF_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	617.3057861328125	2	617.306198	1232.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.049	1	70.027	69.527	70.527	-0.022087								0	0	0	0.33119	1	17721	17721		22.736	11.242	1				36501	2697	21499	21500	44065	44065					-0.009151657741313102
QWPPDPPLHF	10	Unmodified	_QWPPDPPLHF_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	617.3058471679688	2	617.306198	1232.59784	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.218	1	70.196	69.696	70.696	-0.022087								0	0	0	0.34209	1	17771	17771		18.146	8.7632	1				36502	2697	21499	21500	44066	44066					-0.009151657741313102
QWRQRMLFGIF	11	Unmodified	_QWRQRMLFGIF_					0	0	0		nc|ENSG00000144057|Q96JF0-2|ST6GAL2;ENSG00000144057|ENST00000409382|ST6GAL2	nc|ENSG00000144057|Q96JF0-2|ST6GAL2	nc|ENSG00000144057|Q96JF0-2|ST6GAL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7950744628906	3	494.599329	1480.77616	0.44295	0.00021908	1.5232	0.00075336	1.9661	0.00097245	494.59947097615463	53.407	0.25996	53.463	53.3	53.56	0.056255					12	9	2	0	0	0	0.33236	1	12605	12605		4.4062	1.5629	1	137520			36503	4563	21500	21501	44067	44067					0.055001808732868085
QWRRRQRRRVR	11	Unmodified	_QWRRRQRRRVR_					0	0	0		ENST00000370332.5_1_1:92949124-92949509:-|nuORF	ENST00000370332.5_1_1:92949124-92949509:-|nuORF	ENST00000370332.5_1_1:92949124-92949509:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.526611328125	4	414.003082	1651.98322	-0.10972	-4.5424E-05	-1.637	-0.00067773	-1.7467	-0.00072316	414.25263351340425	25.252	0.14712	25.252	25.12	25.267	0					6	4	2	0	0	0	0.33352	1	3978	3978		0	0	1	24372			36504	9799	21501	21502	44068	44068					0.18331149256300705
QWRRSDHW	8	Unmodified	_QWRRSDHW_					0	0	0			REV__nc|ENSG00000165732|Q9NR30-2|DDX21	REV__nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.7799682617188	2	585.781213	1169.54787	-0.081257	-4.7599E-05	-1.7683	-0.0010359	-1.8496	-0.0010835	585.7802234285774	12.75	0.32449	12.682	12.58	12.905	-0.067496					20	10	3	0	0	0	0.46491	1	225	225		0.69038	0.088878	1	105520	+		36505	17263	21502	21503	44069	44069					-0.030118556593834
QWRSTKRSC	9	Unmodified	_QWRSTKRSC_					0	0	0			REV__ENST00000455357.5_1_2:231440642-231440699:-|nuORF	REV__ENST00000455357.5_1_2:231440642-231440699:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2925415039062	2	576.290556	1150.56656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.48	1	113.5	113	114	0.014824								0	0	0	0.24522	1	29526	29526		7.9102	2.6795	1		+		36506	21158	21503	21504	44070	44070					-0.0027006207983504282
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2835998535156	3	481.283503	1440.82868	0.21115	0.00010162	0.016733	8.0532E-06	0.22789	0.00010968	481.28346740858154	91.053	1.1813	91.053	90.123	91.305	0					204	91	3	0	0	0	0.46704	3	24099	24099;24184;24222		2.4348	2.4348	1	1489500	+		36507	20130	21504	21505	44071;44072;44073	44071					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2833557128906	3	481.283503	1440.82868	0.16098	7.7477E-05	-0.084044	-4.0449E-05	0.076937	3.7028E-05	481.28337324082213	91.743	1.505	91.743	91.163	92.668	0					460	110	5	0	0	0	0.46704	4	24544	24379;24544;24586;24624		2.4348	2.4348	1	2919000	+		36508	20130	21504	21505	44074;44075;44076;44077	44075					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2834777832031	3	481.283503	1440.82868	0.27201	0.00013091	-0.081552	-3.925E-05	0.19046	9.1664E-05	481.2833458946528	90.946	1.2551	91.036	90.048	91.303	0.090675					234	95	4	0	0	0	0.46704	1	24068	24068		2.4348	2.4348	1	2653600	+		36509	20130	21504	21505	44078	44078					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2833251953125	3	481.283503	1440.82868	0.24196	0.00011645	-0.091805	-4.4184E-05	0.15015	7.2267E-05	481.28335677385866	91.829	1.6064	91.919	91.143	92.749	0.090668					418	111	4	0	0	0	0.46704	6	24459	24207;24368;24414;24459;24499;24605		2.4348	2.4348	1	3408400	+		36510	20130	21504	21505	44079;44080;44081;44082;44083;44084	44082					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2836608886719	3	481.283503	1440.82868	0.18947	9.119E-05	0.082259	3.959E-05	0.27173	0.00013078	481.2835338027953	93.447	3.2005	93.533	92.695	95.896	0.086678					939	275	5	0	0	0	0.46842	5	25229	24648;24798;24837;25154;25229		2.2527	2.2527	1	7091700	+		36511	20130	21504	21505	44085;44086;44087;44088;44089	44089					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2833251953125	3	481.283503	1440.82868	0.41585	0.00020014	-0.16719	-8.0464E-05	0.24866	0.00011968	481.28336500889986	91.099	1.2414	91.1	90.196	91.437	0.00046539					225	87	3	0	0	0	0.46704	1	24085	24085		2.4348	2.4348	1	2089800	+		36512	20130	21504	21505	44090	44090					0.12589900051102632
QWSRLRRRAGR	11	Unmodified	_QWSRLRRRAGR_					0	0	0			REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	REV__ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	481.283503	1440.82868	0.070112	3.3744E-05	0.17091	8.2258E-05	0.24103	0.000116	481.2836507914175	93.859	2.7908	93.859	92.654	95.445	0	0.16279	8.9428E-05	NaN	2.2527	1005	241	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6521800	+		36513	20130	21504	21505							0.12589900051102632
QWVMAVVP	8	Unmodified	_QWVMAVVP_					0	0	0			REV__ENSG00000103024|ENST00000219302|NME3	REV__ENSG00000103024|ENST00000219302|NME3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.78399658203125	2	465.249306	928.484059	-0.30697	-0.00014282	-1.6871	-0.00078492	-1.9941	-0.00092774	465.2483911392801	14.978	0.60779	14.978	14.649	15.257	0					35	21	2	0	0	0	0.3439	1	818	818		0.79363	0	1	69592	+		36514	14347	21505	21506	44091	44091					0.016956478592987878
QWVRAYQHTN	10	Unmodified	_QWVRAYQHTN_					0	0	0			REV__ENSG00000154764|ENST00000285018|WNT7A	REV__ENSG00000154764|ENST00000285018|WNT7A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8824157714844	3	434.882782	1301.62652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.331	1	25.331	24.831	25.831	0								0	0	0	0.3814	1	4020	4020		1.5923	0.13716	1		+		36515	16676	21506	21507	44092	44092					-0.012230481449705621
QWVRIACLAL	10	Unmodified	_QWVRIACLAL_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8336791992188	2	586.834069	1171.65358	0.49622	0.0002912	-0.50928	-0.00029886	-0.013058	-7.6628E-06	586.8334936433217	82.598	1.5978	82.598	82.287	83.885	0					115	60	4	0	0	0	0.39536	1	21592	21592		4.3292	1.0479	1	2000400			36516	4291	21507	21508	44093	44093					0.07462344141868016
QWVRIACLAL	10	Unmodified	_QWVRIACLAL_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;nc|ENSG00000137857|Q9NRD9-2|DUOX1	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8339233398438	2	586.834069	1171.65358	0.28065	0.0001647	-0.0057981	-3.4025E-06	0.27485	0.00016129	586.8338136975857	82.166	2.7659	82.235	81.4	84.166	0.068993					315	113	4	0	0	0	0.39536	1	21500	21500		4.3292	0.73274	1	1932100			36517	4291	21507	21508	44094	44094					0.07462344141868016
QWWKKSLTY	9	Unmodified	_QWWKKSLTY_					0	0	0		ENSG00000151779|ENST00000281513|NBAS;nc|ENSG00000151779|A2RRP1-2|NBAS	ENSG00000151779|ENST00000281513|NBAS	ENSG00000151779|ENST00000281513|NBAS	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3277587890625	2	620.329673	1238.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.845	1	99.845	99.345	100.35	0								0	0	0	0.264	1	26699	26699		1.8442	0	1				36518	4984	21508	21509	44095	44095					0.03501693777025139
QWWLKLRPL	9	Unmodified	_QWWLKLRPL_					0	0	0		nc|ENSG00000067057|Q01813-2|PFKP;ENSG00000067057|ENST00000381125|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	nc|ENSG00000067057|Q01813-2|PFKP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3699951171875	2	620.371675	1238.7288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.373	1	98.366	97.866	98.866	-0.0068283								0	0	0	0.26334	1	26355	26355		2.0598	0	1				36519	853	21509	21510	44096	44096					0.11898269664584404
QWYPLEPRTE	10	Unmodified	_QWYPLEPRTE_					0	0	0		nc|ENSG00000092929|Q70J99-2|UNC13D;ENST00000591563.5_1_17:73836050-73840487:-|nuORF;ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D	nc|ENSG00000092929|Q70J99-2|UNC13D	nc|ENSG00000092929|Q70J99-2|UNC13D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.6084289550781	3	440.21906	1317.63535	0.15479	6.8142E-05	-0.10705	-4.7124E-05	0.047745	2.1018E-05	440.21891131647743	87.426	1.6399	87.513	86.728	88.368	0.08709					168	79	3	0	0	0	0.32143	1	23246	23246		0.56317	0.32733	1	233650			36520	1429	21510	21511	44097	44097					-0.010761192991594726
QYADIYEQM	9	Oxidation (M)	_QYADIYEQM(Oxidation (M))_		QYADIYEQM(1)		QYADIYEQM(110)	0	0	1		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.7474975585938	2	588.747521	1175.48049	0.50728	0.00029866	-0.067665	-3.9838E-05	0.43961	0.00025882	588.7473572518479	44.364	0.56791	44.433	44.249	44.817	0.068573					46	20	3	0	0	0	0.0023895	1	9857	9857		107.1	76.463	1	673120			36521	6135	21511	21512	44098	44098		717			-0.10023111495911508
QYADIYEQM	9	Oxidation (M)	_QYADIYEQM(Oxidation (M))_		QYADIYEQM(1)		QYADIYEQM(120)	0	0	1		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.7479248046875	2	588.747521	1175.48049	0.41854	0.00024642	0.014517	8.5471E-06	0.43306	0.00025496	588.7474815895321	44.313	0.57499	44.388	44.174	44.749	0.075047					47	20	3	0	0	0	0.0013924	1	9823	9823		117.76	77.811	1	670230			36522	6135	21511	21512	44099	44099		717			-0.10023111495911508
QYADIYEQM	9	Oxidation (M)	_QYADIYEQM(Oxidation (M))_					0	0	1		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	588.747521	1175.48049	0.60308	0.00035506	-0.18938	-0.0001115	0.4137	0.00024357	588.7472904479976	44.581	0.63371	44.581	44.357	44.991	0	0.11379	-0.00014464	NaN	117.76	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	669240			36523	6135	21511	21512				717			-0.10023111495911508
QYAGKYVLF	9	Unmodified	_QYAGKYVLF_					0	0	0		ENST00000519214.5_1_5:150400805-150405029:+|nuORF;ENSG00000211445|ENST00000388825|GPX3	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7924194335938	2	544.792392	1087.57023	1.1048	0.0006019	-0.55424	-0.00030195	0.55059	0.00029996	544.7929550534034	56.087	3.6983	56.087	55.628	59.326	0					439	133	6	0	0	0	0.00056175	15	13368	13368;13415;13459;13501;13551;13602;13653;13706;13754;13799;13904;13988;14017;14065;14116		128.37	80.02	1	380150000			36524	11452	21512	21513	44100;44101;44102;44103;44104;44105;44106;44107;44108;44109;44110;44111;44112;44113;44114	44100					0.029949309656331025
QYAGKYVLF	9	Unmodified	_QYAGKYVLF_					0	0	0		ENST00000519214.5_1_5:150400805-150405029:+|nuORF;ENSG00000211445|ENST00000388825|GPX3	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7926635742188	2	544.792392	1087.57023	0.0666	3.6283E-05	0.96111	0.00052361	1.0277	0.00055989	544.7923319203933	111.94	0.70756	111.94	111.78	112.48	0					149	88	2	0	0	0	0.24581	1	29133	29133		16.942	2.104	1	65811			36525	11452	21512	21513	44115	44115					0.029949309656331025
QYAGKYVLF	9	Unmodified	_QYAGKYVLF_					0	0	0		ENST00000519214.5_1_5:150400805-150405029:+|nuORF;ENSG00000211445|ENST00000388825|GPX3	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7924194335938	2	544.792392	1087.57023	1.0798	0.00058825	-0.54448	-0.00029663	0.53529	0.00029162	544.7929497205371	55.993	4.5378	56.064	55.618	60.156	0.070889					447	165	6	0	0	0	0.0011817	14	13342	13342;13391;13435;13485;13535;13578;13629;13679;13728;13778;13828;13922;13970;14346		120.45	62.979	1	384440000			36526	11452	21512	21513	44116;44117;44118;44119;44120;44121;44122;44123;44124;44125;44126;44127;44128;44129	44116					0.029949309656331025
QYAGKYVLF	9	Unmodified	_QYAGKYVLF_					0	0	0		ENST00000519214.5_1_5:150400805-150405029:+|nuORF;ENSG00000211445|ENST00000388825|GPX3	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2966918945312	2	544.792392	1087.57023	0.38225	0.00020824	0.88059	0.00047974	1.2628	0.00068798	545.2951960347643	113.16	1.0616	113.14	113	114.06	-0.017303					179	131	2	0	0	0	0.27532	1	29489	29489		12.532	3.1841	1	40322			36527	11452	21512	21513	44130	44130					0.029949309656331025
QYAGKYVLF	9	Unmodified	_QYAGKYVLF_					0	0	0		ENST00000519214.5_1_5:150400805-150405029:+|nuORF;ENSG00000211445|ENST00000388825|GPX3	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3348388671875	2	544.792392	1087.57023	0.43232	0.00023553	1.3154	0.00071662	1.7477	0.00095215	545.2951431823412	97.29	0.85181	97.361	97.196	98.048	0.070457					135	96	2	0	0	0	0.25526	1	26188	26188		7.9102	0.62092	1	232710			36528	11452	21512	21513	44131	44131					0.029949309656331025
QYAGKYVLF	9	Unmodified	_QYAGKYVLF_					0	0	0		ENST00000519214.5_1_5:150400805-150405029:+|nuORF;ENSG00000211445|ENST00000388825|GPX3	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7938842773438	2	544.792392	1087.57023	1.1952	0.00065112	-0.4434	-0.00024156	0.75177	0.00040956	544.7930213659608	56.262	4.4551	56.243	55.646	60.101	-0.019081					450	161	6	0	0	0	0.0017972	15	13518	13418;13467;13518;13568;13619;13672;13725;13775;13818;13867;13910;13962;14012;14111;14504		112.59	55.122	1	417290000			36529	11452	21512	21513	44132;44133;44134;44135;44136;44137;44138;44139;44140;44141;44142;44143;44144;44145;44146	44134					0.029949309656331025
QYAGKYVLF	9	Unmodified	_QYAGKYVLF_					0	0	0		ENST00000519214.5_1_5:150400805-150405029:+|nuORF;ENSG00000211445|ENST00000388825|GPX3	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.792392	1087.57023	0.38027	0.00020717	0.37049	0.00020184	0.75075	0.00040901	544.792141906252	111.99	0.19391	111.97	111.85	112.04	-0.015625	-0.077024	-0.00046767	NaN	16.942	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77257			36530	11452	21512	21513							0.029949309656331025
QYAIISEAW	9	Unmodified	_QYAIISEAW_					0	0	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7718505859375	2	540.771657	1079.52876	0.59766	0.0003232	-0.2775	-0.00015006	0.32016	0.00017314	540.7714693851325	71.912	2.417	71.969	71.513	73.93	0.056572					261	87	5	0	0	0	0.0033114	2	18445	18445;18496		99.799	14.157	1	5657400			36531	5962	21513	21514	44147;44148	44147					-0.007822497936786021
QYAIISEAW	9	Unmodified	_QYAIISEAW_					0	0	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7718505859375	2	540.771657	1079.52876	0.64769	0.00035025	-0.31779	-0.00017185	0.3299	0.0001784	540.7714279939622	72.036	2.2949	72.009	71.477	73.772	-0.027275					251	82	5	0	0	0	0.016723	1	18490	18490		69.105	21.356	1	6116100			36532	5962	21513	21514	44149	44149					-0.007822497936786021
QYAPLLAVF	9	Unmodified	_QYAPLLAVF_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.28955078125	2	511.289485	1020.56442	0.46714	0.00023884	-1.5214	-0.00077789	-1.0543	-0.00053905	511.28933106463285	88.198	2.5431	88.198	87.463	90.006	0					388	133	6	0	0	0	0.0046213	3	23333	23293;23333;23375		89.427	35.851	1	4904100			36533	3962	21514	21515	44150;44151;44152	44151					0.0549583245398253
QYAPLLAVF	9	Unmodified	_QYAPLLAVF_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2896423339844	2	511.289485	1020.56442	0.33164	0.00016957	-1.1374	-0.00058152	-0.80571	-0.00041195	511.28939559290933	88.107	2.5639	88.196	87.627	90.191	0.089195					432	148	6	0	0	0	0.010938	2	23269	23269;23314		77.984	24.409	1	4964000			36534	3962	21514	21515	44153;44154	44153					0.0549583245398253
QYAPLLAVF	9	Unmodified	_QYAPLLAVF_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.28961181640625	2	511.289485	1020.56442	0.31607	0.0001616	-0.98484	-0.00050354	-0.66877	-0.00034194	511.28943265081284	88.222	2.0685	88.219	87.694	89.762	-0.0028381					381	109	6	0	0	0	0.010938	3	23278	23278;23323;23365		77.984	24.409	1	5633300			36535	3962	21514	21515	44155;44156;44157	44155					0.0549583245398253
QYAPSTAQF	9	Unmodified	_QYAPSTAQF_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.740234375	2	506.740357	1011.46616	0.25195	0.00012767	-0.3852	-0.0001952	-0.13326	-6.7526E-05	506.74011480056146	46.575	1.1084	46.575	46.271	47.38	0					86	39	4	0	0	0	0.001957	3	10517	10468;10517;10561		110.55	55.779	1	5179900			36536	3048	21515	21516	44158;44159;44160	44159					-0.03911395861860001
QYAPSTAQF	9	Unmodified	_QYAPSTAQF_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7401123046875	2	506.740357	1011.46616	0.35282	0.00017879	-0.53655	-0.00027189	-0.18372	-9.3101E-05	506.7400262732403	46.412	0.69954	46.465	46.172	46.872	0.052574					75	25	4	0	0	0	0.0032746	3	10450	10409;10450;10495		100.09	45.317	1	4996000			36537	3048	21515	21516	44161;44162;44163	44162					-0.03911395861860001
QYAPSTAQF	9	Unmodified	_QYAPSTAQF_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.74017333984375	2	506.740357	1011.46616	0.14064	7.1266E-05	-0.25113	-0.00012726	-0.1105	-5.5994E-05	506.7401402471039	46.435	0.92516	46.489	46.217	47.142	0.054371					87	32	4	0	0	0	0.0010968	4	10458	10413;10458;10504;10559		121.53	57.298	1	4724700			36538	3048	21515	21516	44164;44165;44166;44167	44165					-0.03911395861860001
QYASAFHFL	9	Unmodified	_QYASAFHFL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2670288085938	2	542.266542	1082.51853	0.51319	0.00027829	0.15392	8.3468E-05	0.66712	0.00036175	542.2667549801477	62.776	2.4072	62.776	62.266	64.673	0					201	88	4	0	0	0	1.8227E-16	4	15504	15457;15504;15543;15596		205.78	127.05	1	18239000			36539	4305	21516	21517	44168;44169;44170;44171	44169					-0.019428127282481
QYASAFHFL	9	Unmodified	_QYASAFHFL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2669067382812	2	542.266542	1082.51853	0.60468	0.0003279	0.050795	2.7544E-05	0.65547	0.00035544	542.2667100235502	62.652	2.7565	62.749	62.442	65.198	0.096985					209	100	4	0	0	0	3.2167E-17	4	15449	15406;15449;15500;15552		222.91	144.18	1	19666000			36540	4305	21516	21517	44172;44173;44174;44175	44173					-0.019428127282481
QYASAFHFL	9	Unmodified	_QYASAFHFL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2670288085938	2	542.266542	1082.51853	0.54731	0.00029679	0.12867	6.9772E-05	0.67597	0.00036656	542.2667377777395	62.774	2.591	62.765	62.384	64.975	-0.0085526					213	94	4	0	0	0	1.8227E-16	4	15491	15448;15491;15539;15585		205.78	127.05	1	19498000			36541	4305	21516	21517	44176;44177;44178;44179	44177					-0.019428127282481
QYASLMHSF	9	Oxidation (M)	_QYASLM(Oxidation (M))HSF_		QYASLM(1)HSF		QYASLM(71)HSF	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2474365234375	2	550.247492	1098.48043	0.51731	0.00028465	0.11763	6.4725E-05	0.63494	0.00034937	550.247574961947	40.869	0.8474	40.961	40.611	41.459	0.09267					67	31	3	0	0	0	0.015402	1	8781	8781		71.134	13.662	1	557400			36542	3250	21517	21518	44180	44180		415			-0.06487066705221878
QYATLGDYF	9	Unmodified	_QYATLGDYF_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.792724609375	2	539.248015	1076.48148	0.43904	0.00023675	0.17068	9.204E-05	0.60972	0.00032879	539.2479514475433	70.952	0.77697	71.013	70.574	71.351	0.060783					29	27	2	0	0	0	0.20881	1	17971	17971		27.629	5.8822	1	300950			36543	460	21518	21519	44181	44181					-0.053705290646803405
QYAVLLNRF	9	Unmodified	_QYAVLLNRF_					0	0	0		ENSG00000178694|ENST00000314622|NSUN3;ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENSG00000178694|ENST00000314622|NSUN3	ENSG00000178694|ENST00000314622|NSUN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3165893554688	2	562.316566	1122.61858	0.065007	3.6555E-05	1.0121	0.00056915	1.0772	0.0006057	562.3168072826844	59.659	0.68508	59.659	59.38	60.065	0					45	23	3	0	0	0	4.3382E-05	1	14528	14528		149.99	81.914	1	2799400			36544	7069	21519	21520	44182	44182					0.06217424605551969
QYAVLLNRF	9	Unmodified	_QYAVLLNRF_					0	0	0		ENSG00000178694|ENST00000314622|NSUN3;ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENSG00000178694|ENST00000314622|NSUN3	ENSG00000178694|ENST00000314622|NSUN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3165893554688	2	562.316566	1122.61858	0.18036	0.00010142	0.66812	0.00037569	0.84847	0.00047711	562.3167158308653	59.527	0.78273	59.623	59.294	60.077	0.095093					45	27	2	0	0	0	5.6213E-07	1	14481	14481		158.2	80.053	1	1929500			36545	7069	21519	21520	44183	44183					0.06217424605551969
QYAVLLNRF	9	Unmodified	_QYAVLLNRF_					0	0	0		ENSG00000178694|ENST00000314622|NSUN3;ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENSG00000178694|ENST00000314622|NSUN3	ENSG00000178694|ENST00000314622|NSUN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3167724609375	2	562.316566	1122.61858	0.3383	0.00019023	1.2145	0.00068294	1.5528	0.00087317	562.3169255996559	59.668	0.79842	59.657	59.199	59.997	-0.011486					44	27	2	0	0	0	5.6213E-07	1	14540	14540		158.2	99.524	1	2131200			36546	7069	21519	21520	44184	44184					0.06217424605551969
QYCNQILWF	9	Unmodified	_QYCNQILWF_					0	0	0		ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.8340148925781	3	405.526948	1213.55902	-0.47717	-0.00019351	-4.0941	-0.0016603	-4.5713	-0.0018538	405.5245157095395	65.179	0.12762	65.168	65.074	65.201	-0.011337					5	4	2	0	0	0	0.26127	1	16230	16230		2.7352	0	1	31265			36547	8453	21520	21521	44185	44185					-0.03922214400131452
QYDGIFYEF	9	Unmodified	_QYDGIFYEF_					0	0	0		ENSG00000136783|ENST00000374767|NIPSNAP3A	ENSG00000136783|ENST00000374767|NIPSNAP3A	ENSG00000136783|ENST00000374767|NIPSNAP3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.2611694335938	2	591.261122	1180.50769	0.41508	0.00024542	-0.391	-0.00023118	0.024083	1.4239E-05	591.2607859498166	82.453	0.5806	82.526	82.263	82.844	0.07309					58	23	3	0	0	0	0.0010463	1	21514	21514		122.18	78.321	1	841240			36548	3996	21521	21522	44186	44186					-0.0753425989319112
QYDGIFYEF	9	Unmodified	_QYDGIFYEF_					0	0	0		ENSG00000136783|ENST00000374767|NIPSNAP3A	ENSG00000136783|ENST00000374767|NIPSNAP3A	ENSG00000136783|ENST00000374767|NIPSNAP3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.26123046875	2	591.261122	1180.50769	0.49917	0.00029514	-0.30589	-0.00018086	0.19328	0.00011428	591.2607843097167	82.532	0.80059	82.511	82.278	83.078	-0.020584					81	31	4	0	0	0	0.0042138	1	21534	21534		92.653	56.526	1	1013000			36549	3996	21521	21522	44187	44187					-0.0753425989319112
QYDGIFYEF	9	Unmodified	_QYDGIFYEF_					0	0	0		ENSG00000136783|ENST00000374767|NIPSNAP3A	ENSG00000136783|ENST00000374767|NIPSNAP3A	ENSG00000136783|ENST00000374767|NIPSNAP3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	591.261122	1180.50769	0.53826	0.00031825	-0.67211	-0.00039739	-0.13385	-7.9141E-05	591.2606439364135	82.542	0.73929	82.542	82.262	83.001	0	0.015863	-0.0002817	NaN	122.18	68	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	820000			36550	3996	21521	21522							-0.0753425989319112
QYDKILDLI	9	Unmodified	_QYDKILDLI_					0	0	0		ENSG00000165092|ENST00000297785|ALDH1A1	ENSG00000165092|ENST00000297785|ALDH1A1	ENSG00000165092|ENST00000297785|ALDH1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8056640625	2	560.816064	1119.61758	0.34311	0.00019242	0.76204	0.00042736	1.1052	0.00061979	560.8161827985462	71.586	0.50858	71.586	71.402	71.911	0					39	17	3	0	0	0	0.011693	1	18219	18219		76.825	10.368	1	490060			36551	5922	21522	21523	44188	44188					0.06255165445986677
QYDKILDLI	9	Unmodified	_QYDKILDLI_					0	0	0		ENSG00000165092|ENST00000297785|ALDH1A1	ENSG00000165092|ENST00000297785|ALDH1A1	ENSG00000165092|ENST00000297785|ALDH1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8056030273438	2	560.816064	1119.61758	0.3541	0.00019858	0.67099	0.0003763	1.0251	0.00057489	560.8162068986752	71.519	0.65504	71.575	71.402	72.057	0.056572					45	23	3	0	0	0	0.014206	2	18156	18156;18202		72.968	10.395	1	408430			36552	5922	21522	21523	44189;44190	44189					0.06255165445986677
QYDKILDLI	9	Unmodified	_QYDKILDLI_					0	0	0		ENSG00000165092|ENST00000297785|ALDH1A1	ENSG00000165092|ENST00000297785|ALDH1A1	ENSG00000165092|ENST00000297785|ALDH1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8056640625	2	560.816064	1119.61758	0.35359	0.0001983	0.7364	0.00041299	1.09	0.00061129	560.8163200324256	71.636	0.6116	71.608	71.397	72.009	-0.027275					42	21	3	0	0	0	0.0037449	1	18214	18214		96.367	10.725	1	588490			36553	5922	21522	21523	44191	44191					0.06255165445986677
QYDPYTDSRF	10	Unmodified	_QYDPYTDSRF_					0	0	0		nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2;NAV2|p.K1850Rfs*16|1|0.05|ENSG00000166833|chr11:20083052-20083053|-/GAGCTCTTTTG|frameshift_variant	nc|ENSG00000166833|Q8IVL1-10|NAV2	nc|ENSG00000166833|Q8IVL1-10|NAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.2837524414062	2	646.283117	1290.55168	0.69151	0.00044691	-0.22869	-0.0001478	0.46282	0.00029911	646.2829576736286	45.476	0.59357	45.476	45.238	45.832	0					51	21	3	0	0	0	0.00067342	1	10164	10164		125.18	107.03	1	592250			36554	12820	21523	21524	44192	44192					-0.08197275466886822
QYDPYTDSRF	10	Unmodified	_QYDPYTDSRF_					0	0	0		nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2;NAV2|p.K1850Rfs*16|1|0.05|ENSG00000166833|chr11:20083052-20083053|-/GAGCTCTTTTG|frameshift_variant	nc|ENSG00000166833|Q8IVL1-10|NAV2	nc|ENSG00000166833|Q8IVL1-10|NAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.2833862304688	2	646.283117	1290.55168	0.54274	0.00035077	0.02679	1.7314E-05	0.56953	0.00036808	646.2830901419261	45.091	0.61924	45.16	44.894	45.514	0.068569					53	21	3	0	0	0	0.0022715	2	10029	10029;10076		107.56	79.935	1	827110			36555	12820	21523	21524	44193;44194	44193					-0.08197275466886822
QYDPYTDSRF	10	Unmodified	_QYDPYTDSRF_					0	0	0		nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2;NAV2|p.K1850Rfs*16|1|0.05|ENSG00000166833|chr11:20083052-20083053|-/GAGCTCTTTTG|frameshift_variant	nc|ENSG00000166833|Q8IVL1-10|NAV2	nc|ENSG00000166833|Q8IVL1-10|NAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	646.283447265625	2	646.283117	1290.55168	0.49254	0.00031832	0.16605	0.00010732	0.65859	0.00042563	646.2831655304077	45.082	0.55978	45.157	44.911	45.471	0.075047					51	20	4	0	0	0	0.00067342	1	10032	10032		125.18	101.16	1	778780			36556	12820	21523	21524	44195	44195					-0.08197275466886822
QYDRRRGM	8	Unmodified	_QYDRRRGM_					0	0	0		nc|ENSG00000184056|Q9H267-2|VPS33B;ENSG00000184056|ENST00000333371|VPS33B	nc|ENSG00000184056|Q9H267-2|VPS33B	nc|ENSG00000184056|Q9H267-2|VPS33B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2701416015625	2	541.269624	1080.5247	0.11309	6.1211E-05	0.7396	0.00040032	0.85268	0.00046153	541.2699579204874	12.222	0.29387	12.154	12.051	12.345	-0.06806					27	11	4	0	0	0	0.46491	1	62	62		0.69038	0	1	147000			36557	7426	21524	21525	44196	44196					-0.012346177683639326
QYEEQFVTL	9	Unmodified	_QYEEQFVTL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF;XPO1|p.F287Lfs*3|1|0.34|ENSG00000082898|chr2:61496906-61496906|A/-|frameshift_variant	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7796020507812	2	578.779679	1155.5448	0.48555	0.00028103	-0.613	-0.00035479	-0.12745	-7.3766E-05	578.7792753589569	66.018	1.4139	66.018	65.634	67.048	0					112	44	4	0	0	0	0.00047355	1	16471	16471		114.19	114.19	1	2386000			36558	1211	21525	21526	44197	44197					-0.02674588347417739
QYEEQFVTL	9	Unmodified	_QYEEQFVTL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF;XPO1|p.F287Lfs*3|1|0.34|ENSG00000082898|chr2:61496906-61496906|A/-|frameshift_variant	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	578.779679	1155.5448	0.55915	0.00032362	-0.68669	-0.00039744	-0.12754	-7.3819E-05	578.7792295220021	65.867	1.6511	65.956	65.628	67.279	0.088882	-0.027943	-9.0973E-05	NaN	114.19	111	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2215200			36559	1211	21525	21526							-0.02674588347417739
QYEEQFVTL	9	Unmodified	_QYEEQFVTL_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF;XPO1|p.F287Lfs*3|1|0.34|ENSG00000082898|chr2:61496906-61496906|A/-|frameshift_variant	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	578.779679	1155.5448	0.3629	0.00021004	-0.54654	-0.00031632	-0.18364	-0.00010629	578.77931950373	65.991	1.4283	65.978	65.556	66.984	-0.013588	-0.0059556	7.1263E-05	NaN	114.19	115	47	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2657200			36560	1211	21525	21526							-0.02674588347417739
QYEKLNLIL	9	Unmodified	_QYEKLNLIL_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ENST00000522406.5_1_17:67144970-67178294:-|nuORF;ENST00000519732.5_1_17:67144970-67171813:-|nuORF	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3300170898438	2	567.331882	1132.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.19	1	115.17	114.67	115.67	-0.020988								0	0	0	0.264	1	29878	29878		1.8442	0	1				36561	5117	21526	21527	44198	44198					0.0881915819995811
QYEKLNLIL	9	Unmodified	_QYEKLNLIL_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ENST00000522406.5_1_17:67144970-67178294:-|nuORF;ENST00000519732.5_1_17:67144970-67171813:-|nuORF	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.330322265625	2	567.331882	1132.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.42	1	116.4	115.9	116.9	-0.022781								0	0	0	0.264	1	30161	30161		1.8442	0	1				36562	5117	21526	21527	44199	44199					0.0881915819995811
QYEKLNLIL	9	Unmodified	_QYEKLNLIL_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ENST00000522406.5_1_17:67144970-67178294:-|nuORF;ENST00000519732.5_1_17:67144970-67171813:-|nuORF	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3298950195312	2	567.331882	1132.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.34	1	119.32	118.82	119.82	-0.024361								0	0	0	0.264	1	30810	30810		1.8442	0	1				36563	5117	21526	21527	44200	44200					0.0881915819995811
QYEPLFHML	9	Oxidation (M)	_QYEPLFHM(Oxidation (M))L_		QYEPLFHM(1)L		QYEPLFHM(180)L	0	0	1		ENSG00000171608|ENST00000377346|PIK3CD;nc|ENSG00000171608|O00329-2|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.2865600585938	2	597.286617	1192.55868	0.54459	0.00032528	-0.27859	-0.0001664	0.26601	0.00015888	597.2863835793006	57.515	0.61177	57.515	57.216	57.828	0					65	21	5	0	0	0	3.327E-09	2	13903	13859;13903		180.01	133.99	1	2722200			36564	6563	21527	21528	44201;44202	44202		761			-0.029896341199901144
QYEPLFHML	9	Oxidation (M)	_QYEPLFHM(Oxidation (M))L_		QYEPLFHM(1)L		QYEPLFHM(150)L	0	0	1		ENSG00000171608|ENST00000377346|PIK3CD;nc|ENSG00000171608|O00329-2|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.28759765625	2	597.286617	1192.55868	0.51382	0.0003069	-0.022885	-1.3669E-05	0.49094	0.00029323	597.2864013169807	57.368	0.58048	57.453	57.184	57.765	0.085621					48	20	3	0	0	0	5.6754E-05	1	13809	13809		147.83	107.87	1	2833400			36565	6563	21527	21528	44203	44203		761			-0.029896341199901144
QYEPLFHML	9	Oxidation (M)	_QYEPLFHM(Oxidation (M))L_		QYEPLFHM(1)L		QYEPLFHM(160)L	0	0	1		ENSG00000171608|ENST00000377346|PIK3CD;nc|ENSG00000171608|O00329-2|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.287109375	2	597.286617	1192.55868	0.26589	0.00015881	0.012436	7.428E-06	0.27833	0.00016624	597.2864086539936	57.648	0.69336	57.63	57.259	57.953	-0.0172					70	25	5	0	0	0	5.2996E-06	1	13893	13893		156.16	116.2	1	2908100			36566	6563	21527	21528	44204	44204		761			-0.029896341199901144
QYERTPELTQ	10	Unmodified	_QYERTPELTQ_					0	0	0			REV__nc|ENSG00000182771|Q9ULK0-2|GRID1	REV__nc|ENSG00000182771|Q9ULK0-2|GRID1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.8948059082031	3	422.210453	1263.60953	-0.38956	-0.00016447	-0.8637	-0.00036466	-1.2533	-0.00052914	422.20995347556504	12.931	0.36372	12.931	12.783	13.147	0					25	12	3	0	0	0	0.32082	1	268	268		3.3196	0.82116	1	52232	+		36567	18216	21528	21529	44205	44205					-0.011730135414381948
QYESKVFYL	9	Unmodified	_QYESKVFYL_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8005981445312	2	588.800414	1175.58628	0.43709	0.00025736	-0.086204	-5.0757E-05	0.35089	0.0002066	588.8004432290018	55.21	0.9286	55.21	54.891	55.82	0					126	33	5	0	0	0	2.32E-07	5	13161	13117;13161;13208;13244;13296		171.09	121.15	1	21570000			36568	6417	21529	21530	44206;44207;44208;44209;44210	44207					0.005505924119233896
QYESKVFYL	9	Unmodified	_QYESKVFYL_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.8005981445312	2	588.800414	1175.58628	0.57618	0.00033925	-0.12139	-7.1474E-05	0.45479	0.00026778	588.8004165397639	55.131	0.93005	55.202	54.898	55.828	0.070885					132	34	5	0	0	0	5.4465E-12	6	13127	13082;13127;13178;13215;13261;13314		201.57	133.49	1	21375000			36569	6417	21529	21530	44211;44212;44213;44214;44215;44216	44212					0.005505924119233896
QYESKVFYL	9	Unmodified	_QYESKVFYL_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.8005981445312	2	588.800414	1175.58628	0.40262	0.00023707	-0.024363	-1.4345E-05	0.37826	0.00022272	588.8005206679608	55.41	0.94077	55.391	55.08	56.021	-0.019081					130	34	5	0	0	0	5.5754E-11	3	13213	13167;13213;13257		185.05	126.37	1	24684000			36570	6417	21529	21530	44217;44218;44219	44218					0.005505924119233896
QYESVSDLF	9	Unmodified	_QYESVSDLF_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2|p.F1990Lfs*7|1|0.2|ENSG00000054654|chr14:64025137-64025137|T/-|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2510375976562	2	544.250754	1086.48696	0.28154	0.00015323	0.82732	0.00045027	1.1089	0.0006035	544.251054826465	69.486	0.72188	69.486	69.174	69.895	0					52	25	3	0	0	0	0.058995	2	17536	17536;17585		49.554	15.367	1	777230			36571	692	21530	21531	44220;44221	44220					-0.05282850272851647
QYESVSDLF	9	Unmodified	_QYESVSDLF_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2|p.F1990Lfs*7|1|0.2|ENSG00000054654|chr14:64025137-64025137|T/-|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2508544921875	2	544.250754	1086.48696	0.47501	0.00025853	0.47336	0.00025763	0.94837	0.00051615	544.2508760607092	69.446	0.73404	69.512	69.205	69.939	0.066048					56	25	3	0	0	0	0.059067	2	17521	17521;17574		49.527	23.186	1	785370			36572	692	21530	21531	44222;44223	44222					-0.05282850272851647
QYESVSDLF	9	Unmodified	_QYESVSDLF_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2|p.F1990Lfs*7|1|0.2|ENSG00000054654|chr14:64025137-64025137|T/-|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2513427734375	2	544.250754	1086.48696	0.48897	0.00026612	0.52397	0.00028517	1.0129	0.00055129	544.2509745801524	69.504	0.72807	69.482	69.209	69.937	-0.022087					58	26	3	0	0	0	0.037019	2	17527	17527;17573		57.722	21.595	1	833080			36573	692	21530	21531	44224;44225	44224					-0.05282850272851647
QYFCMLFRF	9	Unmodified	_QYFCMLFRF_					0	0	0			REV__chr2:208822555-208824195|450|25.3|0.74|5.1|+|0|TE_info:L1M5,L1M5_dup8142,L1,LINE,donor,-,208822151,208822555|None,PTH2R|5	REV__chr2:208822555-208824195|450|25.3|0.74|5.1|+|0|TE_info:L1M5,L1M5_dup8142,L1,LINE,donor,-,208822151,208822555|None,PTH2R|5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.7952270507812	2	627.793555	1253.57256	0.092178	5.7869E-05	1.347	0.00084566	1.4392	0.00090353	627.794862523927	15.308	0.34369	15.308	15.154	15.498	0					22	11	3	0	0	0	0.35563	1	1001	1001		0.52476	0.12405	1	45217	+		36574	13189	21531	21532	44226	44226					-0.044086798925491166
QYFDSRGMFI	10	Oxidation (M)	_QYFDSRGM(Oxidation (M))FI_		QYFDSRGM(1)FI		QYFDSRGM(100)FI	0	0	1		ENST00000497508.1_1_2:669582-669891:-|nuORF;nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENSG00000151353|ENST00000281017|TMEM18	ENST00000497508.1_1_2:669582-669891:-|nuORF	ENST00000497508.1_1_2:669582-669891:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.2926025390625	2	640.29243	1278.57031	0.33372	0.00021368	0.030482	1.9518E-05	0.3642	0.0002332	640.2923707172058	55.325	0.67006	55.325	55.061	55.732	0					46	24	2	0	0	0	0.0035533	1	13265	13265		100.09	74.691	1	290180			36575	4956	21532	21533	44227	44227		612			-0.057834370966475035
QYFDSRGMFI	10	Oxidation (M)	_QYFDSRGM(Oxidation (M))FI_		QYFDSRGM(1)FI		QYFDSRGM(76)FI	0	0	1		ENST00000497508.1_1_2:669582-669891:-|nuORF;nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENSG00000151353|ENST00000281017|TMEM18	ENST00000497508.1_1_2:669582-669891:-|nuORF	ENST00000497508.1_1_2:669582-669891:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.2925415039062	2	640.29243	1278.57031	0.74115	0.00047455	0.011063	7.0839E-06	0.75221	0.00048163	640.2923698359276	55.198	0.59056	55.269	55.055	55.646	0.070885					36	21	3	0	0	0	0.016475	1	13148	13148		75.571	56.314	1	326100			36576	4956	21532	21533	44228	44228		612			-0.057834370966475035
QYFDSRGMFI	10	Oxidation (M)	_QYFDSRGM(Oxidation (M))FI_		QYFDSRGM(1)FI		QYFDSRGM(90)FI	0	0	1		ENST00000497508.1_1_2:669582-669891:-|nuORF;nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENSG00000151353|ENST00000281017|TMEM18	ENST00000497508.1_1_2:669582-669891:-|nuORF	ENST00000497508.1_1_2:669582-669891:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.293212890625	2	640.29243	1278.57031	0.69738	0.00044652	-0.15957	-0.00010217	0.53781	0.00034435	640.2922897526441	55.413	0.45311	55.484	55.324	55.777	0.070889					25	16	2	0	0	0	0.005261	1	13239	13239		90.135	64.736	1	440640			36577	4956	21532	21533	44229	44229		612			-0.057834370966475035
QYFDSRGMFI	10	Oxidation (M)	_QYFDSRGM(Oxidation (M))FI_		QYFDSRGM(1)FI		QYFDSRGM(59)FI	0	0	1		ENST00000497508.1_1_2:669582-669891:-|nuORF;nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENSG00000151353|ENST00000281017|TMEM18	ENST00000497508.1_1_2:669582-669891:-|nuORF	ENST00000497508.1_1_2:669582-669891:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.2928466796875	2	640.29243	1278.57031	0.57871	0.00037054	-0.094116	-6.0262E-05	0.48459	0.00031028	640.2922380958482	55.619	0.64295	55.6	55.181	55.824	-0.019081					43	23	2	0	0	0	0.048379	1	13279	13279		59.368	33.969	1	518190			36578	4956	21532	21533	44230	44230		612			-0.057834370966475035
QYFKLLEKF	9	Unmodified	_QYFKLLEKF_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;ENST00000479187.5_1_12:40692272-40758932:+|nuORF	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.8973083496094	3	405.897258	1214.66995	0.031333	1.2718E-05	-0.14023	-5.6917E-05	-0.10889	-4.4199E-05	405.897054674974	58.417	0.79121	58.417	58.1	58.891	0					50	26	3	0	0	0	0.17647	1	14187	14187		27.088	18.112	1	322500			36579	7784	21533	21534	44231	44231					0.07119748579611951
QYFKLLEKF	9	Unmodified	_QYFKLLEKF_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;ENST00000479187.5_1_12:40692272-40758932:+|nuORF	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	405.897258	1214.66995	-0.050661	-2.0563E-05	-0.085828	-3.4838E-05	-0.13649	-5.5401E-05	405.8972244465389	58.216	0.58379	58.302	57.97	58.554	0.085621	-0.091312	0.00015847	NaN	27.088	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409040			36580	7784	21533	21534							0.07119748579611951
QYFKLLEKF	9	Unmodified	_QYFKLLEKF_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;ENST00000479187.5_1_12:40692272-40758932:+|nuORF	ENSG00000188906|ENST00000298910|LRRK2	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.897258	1214.66995	0.27636	0.00011217	-0.33963	-0.00013786	-0.06327	-2.5681E-05	406.23145516370937	58.474	0.6442	58.46	58.303	58.947	-0.014267	0.06685	-0.00015058	NaN	27.088	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495950			36581	7784	21533	21534							0.07119748579611951
QYFLDTNFL	9	Unmodified	_QYFLDTNFL_					0	0	0		nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3;nc|ENSG00000158296|Q8WWT9-4|SLC13A3;nc|ENSG00000158296|Q8WWT9-5|SLC13A3;nc|ENSG00000158296|Q8WWT9-2|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.7850952148438	2	580.784764	1159.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.014	1	86.005	85.505	86.505	-0.0090027								0	0	0	0.2225	1	22603	22603		15.248	2.7169	1				36582	5351	21534	21535	44232	44232					-0.018419806222027546
QYFMLNFPK	9	Unmodified	_QYFMLNFPK_					0	0	0			REV__ENSG00000182601|ENST00000331351|HS3ST4	REV__ENSG00000182601|ENST00000331351|HS3ST4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.2764282226562	2	594.299527	1186.5845	0.57971	0.00034452	-3.4756	-0.0020655	-2.8959	-0.001721	594.2973674242533	36.079	0.52046	36.161	35.739	36.259	0.082359					26	18	2	0	0	0	0.25323	1	7288	7288		10.074	0	1	256230	+		36583	18203	21535	21536	44233	44233					-0.0013273987769935047
QYFPKAPEF	9	Unmodified	_QYFPKAPEF_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-3|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.7822265625	2	563.782025	1125.5495	0.51738	0.00029169	-0.93457	-0.00052689	-0.41719	-0.0002352	563.7819120434601	55.054	1.4407	55.054	54.552	55.992	0					179	52	4	0	0	0	0.0037772	1	13153	13153		96.111	65.886	1	6549400			36584	1387	21536	21537	44234	44234					-0.008256594140220841
QYFPKAPEF	9	Unmodified	_QYFPKAPEF_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-3|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.7824096679688	2	563.782025	1125.5495	0.65102	0.00036703	-1.1147	-0.00062843	-0.46365	-0.0002614	563.7817778320342	54.958	1.4854	55.022	54.616	56.101	0.063202					191	54	4	0	0	0	0.0016361	2	13039	13039;13164		114.65	78.605	1	6782200			36585	1387	21536	21537	44235;44236	44235					-0.008256594140220841
QYFPKAPEF	9	Unmodified	_QYFPKAPEF_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-3|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7821044921875	2	563.782025	1125.5495	0.46843	0.00026409	-1.0305	-0.00058097	-0.56207	-0.00031688	563.7818887562232	55.189	1.4549	55.169	54.678	56.133	-0.019081					163	53	4	0	0	0	0.0010463	5	13174	13084;13174;13216;13266;13286		122.18	82.222	1	5833100			36586	1387	21536	21537	44237;44238;44239;44240;44241	44238					-0.008256594140220841
QYFWYRKTLNI	11	Unmodified	_QYFWYRKTLNI_					0	0	0		nc|ENSG00000163817|Q9NP91-2|SLC6A20;ENSG00000163817|ENST00000358525|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.8081970214844	3	511.273388	1530.79833	0.27225	0.0001392	1.9586	0.0010014	2.2309	0.0011406	511.27396685389414	32.538	0.88811	32.592	31.903	32.791	0.054371					60	31	4	0	0	0	0.3331	1	6151	6151		2.2527	0	1	338020			36587	5738	21537	21538	44242	44242					0.054166838227047265
QYGDVMDVF	9	Unmodified	_QYGDVMDVF_					0	0	0		ENSG00000120948|ENST00000240185|TARDBP;nc|ENSG00000120948|Q13148-4|TARDBP;ENST00000456601.1_1_2:239140945-239144573:+|nuORF	ENSG00000120948|ENST00000240185|TARDBP	ENSG00000120948|ENST00000240185|TARDBP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2323608398438	2	537.23405	1072.45355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.765	1	97.765	97.265	98.265	0								0	0	0	0.21353	1	26150	26150		18.146	4.2403	1				36588	2976	21538	21539	44243	44243					-0.07978175316407032
QYGEVANLL	9	Unmodified	_QYGEVANLL_					0	0	0		nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.2265625	2	503.763832	1005.51311	0.42636	0.00021478	0.40372	0.00020338	0.83008	0.00041816	503.7639820989226	64.749	0.82994	64.842	64.554	65.384	0.092888					60	30	3	0	0	0	0.0039377	1	16075	16075		107.19	48.508	1	2331600			36589	4361	21539	21540	44244	44244					0.010574636892783928
QYGEVANLL	9	Unmodified	_QYGEVANLL_					0	0	0		nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	nc|ENSG00000141252|Q5VIR6-2|VPS53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2265930175781	2	503.763832	1005.51311	0.29223	0.00014722	0.49234	0.00024802	0.78458	0.00039524	503.76404864086004	64.848	0.90127	64.837	64.522	65.423	-0.010696					64	32	3	0	0	0	0.0039377	1	16105	16105		107.19	31.426	1	1929500			36590	4361	21539	21540	44245	44245					0.010574636892783928
QYGNILHLY	9	Unmodified	_QYGNILHLY_					0	0	0		ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC	ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC	ENSG00000173599|ENST00000393960|PC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.277587890625	2	560.792924	1119.57129	0.060462	3.3906E-05	-0.14793	-8.296E-05	-0.087472	-4.9054E-05	560.7929529789286	59.735	0.36487	59.735	59.533	59.897	0					16	12	2	0	0	0	0.23783	1	14592	14592		12.532	0	1	278310			36591	6735;12840	21540	21541	44246	44246					0.01629145334572968
QYGNILHLY	9	Unmodified	_QYGNILHLY_					0	0	0		ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC	ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC	ENSG00000173599|ENST00000393960|PC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.2772216796875	2	560.792924	1119.57129	0.16843	9.4454E-05	0.17792	9.9777E-05	0.34635	0.00019423	560.7927271622613	59.563	0.41743	59.659	59.438	59.855	0.095089					21	14	2	0	0	0	0.21137	1	14524	14524		24.674	19.918	1	272870			36592	6735;12840	21540	21541	44247	44247					0.01629145334572968
QYGNILHLY	9	Unmodified	_QYGNILHLY_					0	0	0		ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC	ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC	ENSG00000173599|ENST00000393960|PC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	560.792924	1119.57129	0.31395	0.00017606	0.65578	0.00036776	0.96973	0.00054382	560.7927846829501	59.727	0.35919	59.716	59.49	59.85	-0.011486	0.012625	0.0005569	NaN	18.135	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264750			36593	6735;12840	21540	21541							0.01629145334572968
QYHLQSNEF	9	Unmodified	_QYHLQSNEF_					0	0	0		ENST00000489994.5_1_7:112107978-112115571:+|nuORF;nc|ENSG00000288640|O00458-2|IFRD1;ENSG00000006652|ENST00000403825|IFRD1	ENST00000489994.5_1_7:112107978-112115571:+|nuORF	ENST00000489994.5_1_7:112107978-112115571:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3770751953125	2	583.26727	1164.51999	0.17895	0.00010438	0.019981	1.1654E-05	0.19893	0.00011603	583.2671593076072	40.923	0.59179	40.923	40.688	41.28	0					40	21	3	0	0	0	0.075356	1	8776	8776		63.961	29.559	1	342610			36594	366	21541	21542	44248	44248					-0.05569223430143211
QYHLQSNEF	9	Unmodified	_QYHLQSNEF_					0	0	0		ENST00000489994.5_1_7:112107978-112115571:+|nuORF;nc|ENSG00000288640|O00458-2|IFRD1;ENSG00000006652|ENST00000403825|IFRD1	ENST00000489994.5_1_7:112107978-112115571:+|nuORF	ENST00000489994.5_1_7:112107978-112115571:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.377197265625	2	583.26727	1164.51999	0.45317	0.00026432	-0.18967	-0.00011063	0.2635	0.00015369	583.2670421493285	40.486	0.61142	40.578	40.369	40.98	0.09267					41	22	3	0	0	0	0.036702	1	8651	8651		71.708	40.44	1	362350			36595	366	21541	21542	44249	44249					-0.05569223430143211
QYHLQSNEF	9	Unmodified	_QYHLQSNEF_					0	0	0		ENST00000489994.5_1_7:112107978-112115571:+|nuORF;nc|ENSG00000288640|O00458-2|IFRD1;ENSG00000006652|ENST00000403825|IFRD1	ENST00000489994.5_1_7:112107978-112115571:+|nuORF	ENST00000489994.5_1_7:112107978-112115571:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.376953125	2	583.26727	1164.51999	0.42854	0.00024995	-0.099268	-5.79E-05	0.32927	0.00019205	583.2670445223795	40.468	0.43788	40.567	40.368	40.806	0.099403					35	15	3	0	0	0	0.011436	1	8637	8637		80.676	47.89	1	405820			36596	366	21541	21542	44250	44250					-0.05569223430143211
QYIERFTI	8	Unmodified	_QYIERFTI_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;LIMCH1|p.Q590Kfs*9|1|0.09|ENSG00000064042|chr4:41650493-41650494|-/AAAGACTGTAACAAAA|frameshift_variant;LIMCH1|p.Q607Hfs*8|1|0.08|ENSG00000064042|chr4:41650547-41650548|-/TGCTATATAT|frameshift_variant;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.3056030273438	2	535.287474	1068.5604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.008	1	39.008	38.508	39.508	0								0	0	0	0.29147	1	8188	8188		30.225	0	1				36597	783	21542	21543	44251	44251					0.028857429602794582
QYIKFLQTI	9	Unmodified	_QYIKFLQTI_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.334716796875	2	577.334424	1152.6543	0.46877	0.00027064	-0.39451	-0.00022777	0.074255	4.287E-05	577.3342547410106	64.473	0.59533	64.473	64.185	64.781	0					51	21	3	0	0	0	0.00012108	2	16007	16007;16056		137.42	89.675	1	1044600			36598	4931	21543	21544	44252;44253	44252					0.08407462062541526
QYIKFLQTI	9	Unmodified	_QYIKFLQTI_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.334228515625	2	577.334424	1152.6543	0.49349	0.00028491	-0.32449	-0.00018734	0.169	9.7571E-05	577.3342610133049	64.367	0.65207	64.46	64.17	64.822	0.09288					52	23	3	0	0	0	0.00012108	1	15999	15999		137.42	89.675	1	1065800			36599	4931	21543	21544	44254	44254					0.08407462062541526
QYIKFLQTI	9	Unmodified	_QYIKFLQTI_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3347778320312	2	577.334424	1152.6543	0.44444	0.00025659	-0.26273	-0.00015169	0.18171	0.0001049	577.3342659443006	64.48	0.74722	64.47	64.177	64.924	-0.0095367					55	26	3	0	0	0	0.00012108	2	15996	15996;16043		137.42	93.651	1	1041700			36600	4931	21543	21544	44255;44256	44255					0.08407462062541526
QYILATVVT	9	Unmodified	_QYILATVVT_					0	0	0		nc|ENSG00000115761|Q9BSC4-4|NOL10	nc|ENSG00000115761|Q9BSC4-4|NOL10	nc|ENSG00000115761|Q9BSC4-4|NOL10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2772216796875	2	504.292225	1006.5699	0.32689	0.00016485	0.16934	8.5396E-05	0.49623	0.00025025	504.2923166181032	56.962	0.69276	57.04	56.704	57.397	0.078674					58	23	3	0	0	0	0.20626	1	13703	13703		22.736	0.078198	1	1037200			36601	12663	21544	21545	44257	44257					0.06687511245786482
QYILAVPVL	9	Unmodified	_QYILAVPVL_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3126220703125	2	508.312961	1014.61137	0.4945	0.00025136	-1.0726	-0.00054521	-0.57809	-0.00029385	508.31244813659475	86.824	1.7371	86.824	86.013	87.75	0					187	72	4	0	0	0	0.017871	3	22848	22848;22893;22936		67.344	29.37	1	1981400			36602	5908	21545	21546	44258;44259;44260	44258					0.10464692005132292
QYILAVPVL	9	Unmodified	_QYILAVPVL_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.3127746582031	2	508.312961	1014.61137	0.35434	0.00018012	-0.92766	-0.00047154	-0.57332	-0.00029143	508.3122762382903	86.762	3.9972	86.849	84.107	88.105	0.087097					259	169	3	0	0	0	0.0061338	4	22804	22804;22850;22899;22949		85.357	47.383	1	1888400			36603	5908	21545	21546	44261;44262;44263;44264	44261					0.10464692005132292
QYILAVPVL	9	Unmodified	_QYILAVPVL_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.312744140625	2	508.312961	1014.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.756	1	86.75	86.25	87.25	-0.0056229								0	0	0	0.061409	1	22830	22830		57.471	19.497	1				36604	5908	21545	21546	44265	44265					0.10464692005132292
QYILAVPVL	9	Unmodified	_QYILAVPVL_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3129577636719	2	508.312961	1014.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.892	1	86.887	86.387	87.387	-0.0056229								0	0	0	0.0067152	1	22872	22872		85.357	39.336	1				36605	5908	21545	21546	44266	44266					0.10464692005132292
QYILAVPVL	9	Unmodified	_QYILAVPVL_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3129577636719	2	508.312961	1014.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.059	1	87.053	86.553	87.553	-0.0056229								0	0	0	0.051692	1	22923	22923		60.39	28.084	1				36606	5908	21545	21546	44267	44267					0.10464692005132292
QYILAVPVL	9	Unmodified	_QYILAVPVL_					0	0	0		ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	ENSG00000164953|ENST00000453321|TMEM67	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3127746582031	2	508.312961	1014.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.229	1	87.223	86.723	87.723	-0.0056229								0	0	0	0.20238	1	22975	22975		21.747	2.4897	1				36607	5908	21545	21546	44268	44268					0.10464692005132292
QYIPTFHVY	9	Unmodified	_QYIPTFHVY_					0	0	0		nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.816162109375	2	584.295299	1166.57605	0.78884	0.00046091	1.3205	0.00077155	2.1093	0.0012325	584.295930682589	60.746	0.38744	60.746	60.521	60.908	0					29	13	4	0	0	0	0.068501	1	14897	14897		46.021	8.047	1	670350			36608	4100	21546	21547	44269	44269					-0.0005797052267553227
QYIPTFHVY	9	Unmodified	_QYIPTFHVY_					0	0	0		nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8162841796875	2	584.295299	1166.57605	0.79788	0.0004662	1.1598	0.00067767	1.9577	0.0011439	584.2958927770719	60.715	0.31664	60.705	60.546	60.862	-0.0094528					19	11	2	0	0	0	0.068501	1	14885	14885		46.021	8.047	1	657140			36609	4100	21546	21547	44270	44270					-0.0005797052267553227
QYIQIYSL	8	Unmodified	_QYIQIYSL_					0	0	0		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8051147460938	2	514.276575	1026.5386	0.30827	0.00015854	3.6891	0.0018972	3.9974	0.0020558	515.2838827122683	86.763	0.74663	86.85	86.372	87.119	0.087097					64	30	3	0	0	0	0.34218	1	22924	22924		5.2307	0	1	117010			36610	1198	21547	21548	44271	44271					0.026389382116803972
QYISYIPQI	9	Unmodified	_QYISYIPQI_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.V1010Cfs*42|1|0.18|ENSG00000168488|chr16:28836062-28836062|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8030395507812	2	562.802957	1123.59136	0.14585	8.2086E-05	-0.62703	-0.00035289	-0.48118	-0.00027081	562.8030878846688	75.552	0.74893	75.552	75.128	75.877	0					60	25	3	0	0	0	0.020233	1	19414	19414		63.961	22.121	1	666680			36611	64	21548	21549	44272	44272					0.03450896274512161
QYISYIPQI	9	Unmodified	_QYISYIPQI_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.V1010Cfs*42|1|0.18|ENSG00000168488|chr16:28836062-28836062|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8027954101562	2	562.802957	1123.59136	0.38805	0.0002184	-1.0442	-0.0005877	-0.65619	-0.00036931	562.8029998452945	75.446	0.78685	75.498	75.102	75.889	0.052368					75	28	4	0	0	0	0.017549	1	19377	19377		67.838	23.98	1	732930			36612	64	21548	21549	44273	44273					0.03450896274512161
QYISYIPQI	9	Unmodified	_QYISYIPQI_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.V1010Cfs*42|1|0.18|ENSG00000168488|chr16:28836062-28836062|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8027954101562	2	562.802957	1123.59136	0.37514	0.00021113	-0.94295	-0.0005307	-0.56781	-0.00031956	562.8030734828782	75.544	0.74747	75.513	75.184	75.931	-0.031487					78	26	4	0	0	0	0.011693	1	19405	19405		76.825	27.27	1	737060			36613	64	21548	21549	44274	44274					0.03450896274512161
QYKCNMGYEY	10	Unmodified	_QYKCNMGYEY_					0	0	0		ENSG00000000971|ENST00000367429|CFH;nc|ENSG00000000971|P08603|CFH;nc|ENSG00000000971|P08603-2|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENSG00000000971|ENST00000367429|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.51068115234375	3	433.510858	1297.51074	0.15766	6.8348E-05	-0.66075	-0.00028644	-0.50309	-0.00021809	433.51058966955185	39.894	0.8354	39.986	39.75	40.585	0.09267					76	29	4	0	0	0	0.38522	1	8441	8441		6.1918	1.4759	1	810840			36614	286;10810	21549	21550	44275	44275					-0.1261107610232557
QYKGMFDTL	9	Oxidation (M)	_QYKGM(Oxidation (M))FDTL_		QYKGM(1)FDTL		QYKGM(79)FDTL	0	0	1		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.2661743164062	2	559.762975	1117.5114	0.2463	0.00013787	0.059736	3.3438E-05	0.30604	0.00017131	559.7628614983184	41.449	1.0881	41.539	40.499	41.587	0.090252					81	40	4	0	0	0	0.010453	1	8930	8930		78.728	30.382	1	1648500			36615	5902	21550	21551	44276	44276		698			-0.04265913390986498
QYKGMFDTL	9	Oxidation (M)	_QYKGM(Oxidation (M))FDTL_		QYKGM(1)FDTL		QYKGM(89)FDTL	0	0	1		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.762451171875	2	559.762975	1117.5114	0.24538	0.00013736	-0.078068	-4.37E-05	0.16732	9.3657E-05	559.7627802717598	41.355	0.76781	41.451	40.832	41.6	0.096626					56	28	3	0	0	0	0.004681	1	8916	8916		88.954	48.997	1	1143000			36616	5902	21550	21551	44277	44277		698			-0.04265913390986498
QYKGMFDTL	9	Oxidation (M)	_QYKGM(Oxidation (M))FDTL_					0	0	1		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	559.762975	1117.5114	0.2212	0.00012382	0.062087	3.4754E-05	0.28328	0.00015857	559.7628247540605	41.875	0.35466	41.875	41.786	42.141	0	0.25334	8.2608E-05	NaN	88.954	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	643320			36617	5902	21550	21551				698			-0.04265913390986498
QYLDVLHAL	9	Unmodified	_QYLDVLHAL_					0	0	0		ENST00000607532.5_1_6:13307806-13327130:-|nuORF;nc|ENSG00000145979|Q9P0N9-3|TBC1D7;nc|ENSG00000145979|Q9P0N9-4|TBC1D7;nc|ENSG00000145979|Q9P0N9-2|TBC1D7;ENSG00000145979|ENST00000379300|TBC1D7	ENST00000607532.5_1_6:13307806-13327130:-|nuORF	ENST00000607532.5_1_6:13307806-13327130:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.8296508789062	2	536.295299	1070.57605	0.55447	0.00029736	0.96145	0.00051562	1.5159	0.00081298	536.2956213764747	68.899	0.71902	68.899	68.566	69.285	0					64	25	4	0	0	0	0.12846	1	17396	17396		36.044	18.931	1	1037700			36618	4682	21551	21552	44278	44278					0.043580294773164496
QYLDVLHAL	9	Unmodified	_QYLDVLHAL_					0	0	0		ENST00000607532.5_1_6:13307806-13327130:-|nuORF;nc|ENSG00000145979|Q9P0N9-3|TBC1D7;nc|ENSG00000145979|Q9P0N9-4|TBC1D7;nc|ENSG00000145979|Q9P0N9-2|TBC1D7;ENSG00000145979|ENST00000379300|TBC1D7	ENST00000607532.5_1_6:13307806-13327130:-|nuORF	ENST00000607532.5_1_6:13307806-13327130:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.830322265625	2	536.295299	1070.57605	0.44568	0.00023901	1.0058	0.00053941	1.4515	0.00077843	536.2956620857949	68.815	0.75394	68.887	68.618	69.372	0.071938					59	27	3	0	0	0	0.12846	1	17330	17330		44.407	21.671	1	1127100			36619	4682	21551	21552	44279	44279					0.043580294773164496
QYLDVLHAL	9	Unmodified	_QYLDVLHAL_					0	0	0		ENST00000607532.5_1_6:13307806-13327130:-|nuORF;nc|ENSG00000145979|Q9P0N9-3|TBC1D7;nc|ENSG00000145979|Q9P0N9-4|TBC1D7;nc|ENSG00000145979|Q9P0N9-2|TBC1D7;ENSG00000145979|ENST00000379300|TBC1D7	ENST00000607532.5_1_6:13307806-13327130:-|nuORF	ENST00000607532.5_1_6:13307806-13327130:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.8302612304688	2	536.295299	1070.57605	0.49789	0.00026702	0.88093	0.00047244	1.3788	0.00073945	536.2956601102339	68.904	0.67158	68.885	68.624	69.296	-0.019157					56	23	3	0	0	0	0.05508	1	17352	17352		67.344	38.262	1	1171200			36620	4682	21551	21552	44280	44280					0.043580294773164496
QYLEEAPKF	9	Unmodified	_QYLEEAPKF_					0	0	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3369140625	2	562.784764	1123.55498	0.40147	0.00022594	0.39186	0.00022053	0.79333	0.00044647	562.7844180229455	49.128	0.49608	49.128	48.912	49.408	0					39	17	3	0	0	0	0.16853	1	11328	11328		31.268	10.815	1	358030			36621	375	21552	21553	44281	44281					-0.0018598062220007705
QYLEEAPKF	9	Unmodified	_QYLEEAPKF_					0	0	0		ENSG00000007255|ENST00000585934|TRAPPC6A;nc|ENSG00000007255|O75865-2|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	ENSG00000007255|ENST00000585934|TRAPPC6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3367919921875	2	562.784764	1123.55498	0.33328	0.00018757	0.4419	0.00024869	0.77518	0.00043626	562.7846522570101	49.18	0.38662	49.225	49.073	49.46	0.044891					32	13	3	0	0	0	0.082647	1	11311	11311		61.602	28.816	1	447010			36622	375	21552	21553	44282	44282					-0.0018598062220007705
QYLELAHSL	9	Unmodified	_QYLELAHSL_					0	0	0		ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL	ENSG00000160949|ENST00000409379|TONSL	ENSG00000160949|ENST00000409379|TONSL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.8599853515625	2	537.284931	1072.55531	0.73847	0.00039677	-0.73253	-0.00039358	0.0059406	3.1918E-06	537.2845727976494	54.208	0.76595	54.208	53.914	54.68	0					49	27	3	0	0	0	0.10135	1	12885	12885		43.858	23.405	1	865100			36623	5500	21553	21554	44283	44283					0.021934390976412033
QYLELAHSL	9	Unmodified	_QYLELAHSL_					0	0	0		ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL	ENSG00000160949|ENST00000409379|TONSL	ENSG00000160949|ENST00000409379|TONSL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.8602905273438	2	537.284931	1072.55531	0.53124	0.00028543	-0.2798	-0.00015033	0.25144	0.00013509	537.2846860262568	54.138	0.68854	54.201	53.852	54.54	0.063206					54	25	3	0	0	0	0.13898	1	12884	12884		22.736	7.898	1	837340			36624	5500	21553	21554	44284	44284					0.021934390976412033
QYLELAHSL	9	Unmodified	_QYLELAHSL_					0	0	0		ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL	ENSG00000160949|ENST00000409379|TONSL	ENSG00000160949|ENST00000409379|TONSL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.8604125976562	2	537.284931	1072.55531	0.66252	0.00035596	-0.28968	-0.00015564	0.37285	0.00020033	537.284757314726	54.417	1.6041	54.401	53.346	54.95	-0.015923					86	58	2	0	0	0	0.074331	1	12919	12919		52.268	29.12	1	816140			36625	5500	21553	21554	44285	44285					0.021934390976412033
QYLIRLLFLKF	11	Unmodified	_QYLIRLLFLKF_					0	0	0			REV__ENSG00000125484|ENST00000372146|GTF3C4	REV__ENSG00000125484|ENST00000372146|GTF3C4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7852478027344	3	485.302507	1452.88569	-0.11421	-5.5427E-05	-0.6484	-0.00031467	-0.76261	-0.0003701	485.30198749624356	12.686	0.67221	12.686	12.555	13.227	0					35	23	2	0	0	0	0.33351	1	292	292		0.094841	0	1	120400	+		36626	15269	21554	21555	44286	44286					0.17736509764245056
QYLLRYIV	8	Unmodified	_QYLLRYIV_					0	0	0			REV__ENST00000585357.1_1_19:38780610-38781349:+|nuORF	REV__ENST00000585357.1_1_19:38780610-38781349:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.298828125	2	534.316035	1066.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.887	1	67.871	67.371	68.371	-0.016296								0	0	0	0.34492	1	17059	17059		16.942	2.104	1		+		36627	22509	21555	21556	44287	44287					0.08687210236644205
QYLLTVPVF	9	Unmodified	_QYLLTVPVF_					0	0	0		nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B	nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3113403320312	2	540.310418	1078.60628	0.5574	0.00030117	0.2996	0.00016188	0.857	0.00046305	540.3105172398492	89.776	0.24397	89.776	89.594	89.838	0					36	18	2	0	0	0	0.1939	1	23754	23754		30.637	5.2372	1	156000			36628	4176	21556	21557	44288	44288					0.07012388142516102
QYLLVTALY	9	Unmodified	_QYLLVTALY_					0	0	0		ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.30810546875	2	542.307875	1082.6012	0.53541	0.00029036	-0.26501	-0.00014371	0.2704	0.00014664	542.3077464497546	82.127	1.0563	82.127	81.844	82.9	0					51	38	2	0	0	0	0.057976	2	21420	21420;21476		49.933	13.889	1	813310			36629	5956	21557	21558	44289;44290	44289					0.06320084279900584
QYLLVTALY	9	Unmodified	_QYLLVTALY_					0	0	0		ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3080444335938	2	542.307875	1082.6012	0.42831	0.00023228	-0.090572	-4.9118E-05	0.33774	0.00018316	542.3078279883864	82.082	0.8272	82.15	81.874	82.701	0.068993					58	34	2	0	0	0	0.019245	3	21372	21372;21421;21476		65.235	32.93	1	693400			36630	5956	21557	21558	44291;44292;44293	44291					0.06320084279900584
QYLLVTALY	9	Unmodified	_QYLLVTALY_					0	0	0		ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	ENSG00000165389|ENST00000298130|SPTSSA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3082275390625	2	542.307875	1082.6012	0.64092	0.00034758	-0.22476	-0.00012189	0.41616	0.00022569	542.3076774531572	82.208	0.71464	82.184	81.878	82.593	-0.02404					55	27	3	0	0	0	0.019245	3	21443	21393;21443;21490		65.235	25.278	1	752440			36631	5956	21557	21558	44294;44295;44296	44295					0.06320084279900584
QYLMDNPTF	9	Oxidation (M)	_QYLM(Oxidation (M))DNPTF_		QYLM(1)DNPTF		QYLM(180)DNPTF	0	0	1		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.7527465820312	2	572.752607	1143.49066	0.19039	0.00010905	0.33285	0.00019064	0.52324	0.00029969	572.7526909792832	55.419	0.82013	55.419	55.061	55.882	0					75	29	3	0	0	0	2.4752E-08	3	13250	13189;13250;13301		179.17	130.83	1	1813800			36632	7873	21558	21559	44297;44298;44299	44298		855			-0.07534503770671108
QYLMDNPTF	9	Oxidation (M)	_QYLM(Oxidation (M))DNPTF_		QYLM(1)DNPTF		QYLM(170)DNPTF	0	0	1		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.7529296875	2	572.752607	1143.49066	0.56783	0.00032523	0.085109	4.8746E-05	0.65294	0.00037398	572.7526008684034	55.393	0.74822	55.464	55.055	55.804	0.070889					54	27	2	0	0	0	3.6949E-07	3	13204	13157;13204;13255		165.72	117.37	1	1889600			36633	7873	21558	21559	44300;44301;44302	44301		855			-0.07534503770671108
QYLMDNPTF	9	Oxidation (M)	_QYLM(Oxidation (M))DNPTF_		QYLM(1)DNPTF		QYLM(180)DNPTF	0	0	1		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.7529907226562	2	572.752607	1143.49066	0.27396	0.00015691	0.31005	0.00017758	0.58401	0.0003345	572.7527479762038	55.5	0.70308	55.481	55.181	55.884	-0.019081					49	25	2	0	0	0	2.4752E-08	3	13265	13221;13265;13316		179.17	130.83	1	2122800			36634	7873	21558	21559	44303;44304;44305	44304		855			-0.07534503770671108
QYLPHVARL	9	Unmodified	_QYLPHVARL_					0	0	0		ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2911987304688	2	548.816733	1095.61891	0.38453	0.00021104	-0.24766	-0.00013592	0.13687	7.5116E-05	548.8170279921255	41.652	0.55147	41.652	41.504	42.055	0					37	24	2	0	0	0	0.14961	1	8967	8967		34.402	18.555	1	2036600			36635	4798	21559	21560	44306	44306					0.07492844325406622
QYLPHVARL	9	Unmodified	_QYLPHVARL_					0	0	0		ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.8168334960938	2	548.816733	1095.61891	0.39327	0.00021584	-0.15918	-8.7363E-05	0.23409	0.00012847	548.816873091334	41.461	0.55235	41.551	41.162	41.715	0.090252					44	21	3	0	0	0	0.12642	2	8918	8918;8968		34.402	15.145	1	1760300			36636	4798	21559	21560	44307;44308	44307					0.07492844325406622
QYLPHVARL	9	Unmodified	_QYLPHVARL_					0	0	0		ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8165893554688	2	548.816733	1095.61891	0.58041	0.00031854	-0.79122	-0.00043424	-0.21081	-0.0001157	548.816661110279	41.407	0.51915	41.503	41.148	41.667	0.096622					43	19	3	0	0	0	0.088443	1	8923	8923		39.95	17.213	1	2439100			36637	4798	21559	21560	44309	44309					0.07492844325406622
QYLPRISLY	9	Unmodified	_QYLPRISLY_					0	0	0			REV__ENSG00000122035|ENST00000241463|RASL11A	REV__ENSG00000122035|ENST00000241463|RASL11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.2928466796875	2	576.824224	1151.63389	0.14809	8.5425E-05	-1.231	-0.00071006	-1.0829	-0.00062463	576.8236571530452	61.932	1.1147	61.932	61.254	62.369	0					65	41	2	0	0	0	0.24471	1	15277	15277		17.113	1.2657	1	214580	+		36638	15146	21560	21561	44310	44310					0.06414291402757044
QYLPRPCY	8	Unmodified	_QYLPRPCY_					0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2552490234375	2	520.25512	1038.49569	0.53289	0.00027724	0.43657	0.00022713	0.96946	0.00050437	520.2550880230604	92.054	0.69686	92.055	91.755	92.451	0.00046539					136	46	4	0	0	0	0.45169	1	24500	24500		5.2307	5.2307	1	573370	+		36639	15710	21561	21562	44311	44311					-0.022021551173565967
QYLPSPPLL	9	Unmodified	_QYLPSPPLL_					0	0	0		ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2947387695312	2	514.294768	1026.57498	0.23032	0.00011845	-0.043045	-2.2138E-05	0.18727	9.6314E-05	514.294594650352	76.41	0.98083	76.41	75.976	76.957	0					93	35	5	0	0	0	0.0018995	3	19677	19629;19677;19730		111.29	33.138	1	1320800			36640	2945	21562	21563	44312;44313;44314	44313					0.0627581510843811
QYLPSPPLL	9	Unmodified	_QYLPSPPLL_					0	0	0		ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2944946289062	2	514.294768	1026.57498	0.074593	3.8363E-05	0.053812	2.7675E-05	0.12841	6.6038E-05	514.2946060161114	76.337	1.18	76.39	75.968	77.148	0.053421					95	41	3	0	0	0	0.0033114	3	19634	19634;19683;19731		99.799	37.432	1	1160900			36641	2945	21562	21563	44315;44316;44317	44315					0.0627581510843811
QYLPSPPLL	9	Unmodified	_QYLPSPPLL_					0	0	0		ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2948608398438	2	514.294768	1026.57498	0.30528	0.000157	-0.054369	-2.7961E-05	0.25091	0.00012904	514.2945494310088	76.422	0.99878	76.39	75.992	76.991	-0.031487					85	36	3	0	0	0	0.0013036	2	19695	19695;19748		118.89	50.814	1	1289800			36642	2945	21562	21563	44318;44319	44318					0.0627581510843811
QYLPYISYL	9	Unmodified	_QYLPYISYL_					0	0	0		nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-2|WDR81	nc|ENSG00000167716|Q562E7-2|WDR81	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3062133789062	2	580.305332	1158.59611	0.50107	0.00029077	0.78502	0.00045555	1.2861	0.00074632	580.305901538479	84.869	0.61922	84.869	84.555	85.174	0					60	21	5	0	0	0	0.047483	2	22239	22239;22294		53.833	24.751	1	628690			36643	6205	21563	21564	44320;44321	44320					0.023157804172797114
QYLPYISYL	9	Unmodified	_QYLPYISYL_					0	0	0		nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-2|WDR81	nc|ENSG00000167716|Q562E7-2|WDR81	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3052368164062	2	580.305332	1158.59611	0.53752	0.00031192	0.7807	0.00045305	1.3182	0.00076497	580.3058138401171	84.764	0.61785	84.844	84.564	85.182	0.080887					59	23	4	0	0	0	0.03069	2	22202	22202;22252		60.074	29.437	1	590570			36644	6205	21563	21564	44322;44323	44322					0.023157804172797114
QYLPYISYL	9	Unmodified	_QYLPYISYL_					0	0	0		nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-2|WDR81	nc|ENSG00000167716|Q562E7-2|WDR81	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.30615234375	2	580.305332	1158.59611	0.50587	0.00029356	0.72315	0.00041965	1.229	0.0007132	580.3057487091219	84.844	0.68583	84.831	84.535	85.221	-0.01284					60	27	4	0	0	0	0.023967	1	22275	22275		62.573	24.599	1	720570			36645	6205	21563	21564	44324	44324					0.023157804172797114
QYLRRLHYF	9	Unmodified	_QYLRRLHYF_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.5715637207031	3	432.571768	1294.69348	-0.4007	-0.00017333	0.069742	3.0169E-05	-0.33096	-0.00014317	432.5717755451795	39.495	1.6753	39.495	38.958	40.634	0					137	60	4	0	0	0	0.18208	2	8358	8306;8358		26.268	14.027	1	746530			36646	7415	21564	21565	44325;44326	44326					0.057916071367799304
QYLRRLHYF	9	Unmodified	_QYLRRLHYF_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.57159423828125	3	432.571768	1294.69348	-0.16488	-7.132E-05	-0.023456	-1.0147E-05	-0.18833	-8.1467E-05	432.5716742472641	39.219	1.2267	39.312	38.974	40.2	0.09267					120	43	4	0	0	0	0.18208	1	8291	8291		26.268	9.1552	1	1263400			36647	7415	21564	21565	44327	44327					0.057916071367799304
QYLRRLHYF	9	Unmodified	_QYLRRLHYF_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.57171630859375	3	432.571768	1294.69348	-0.030463	-1.3177E-05	-0.18276	-7.9055E-05	-0.21322	-9.2232E-05	432.57163591788594	39.348	1.1924	39.448	38.953	40.146	0.099403					99	42	3	0	0	0	0.19083	2	8270	8270;8320		24.991	9.2963	1	1159500			36648	7415	21564	21565	44328;44329	44328					0.057916071367799304
QYLRVETQF	9	Unmodified	_QYLRVETQF_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.3092651367188	2	592.308938	1182.60332	0.72974	0.00043223	0.69256	0.00041021	1.4223	0.00084244	592.3094953085215	50.397	0.9467	50.397	50.108	51.055	0					92	34	4	0	0	0	0.00010651	2	11654	11654;11702		139.78	64.853	1	3751500			36649	8743	21565	21566	44330;44331	44330					0.019325130176866878
QYLRVETQF	9	Unmodified	_QYLRVETQF_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.31005859375	2	592.308938	1182.60332	1.0347	0.00061287	0.056825	3.3658E-05	1.0915	0.00064653	592.3092342970568	50.344	0.95499	50.389	50.108	51.063	0.044891					102	34	5	0	0	0	4.216E-07	2	11687	11639;11687		163.69	81.025	1	4037400			36650	8743	21565	21566	44332;44333	44333					0.019325130176866878
QYLRVETQF	9	Unmodified	_QYLRVETQF_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.3092651367188	2	592.308938	1182.60332	1.0433	0.00061797	0.28525	0.00016895	1.3286	0.00078692	592.3093122772304	50.418	1.0305	50.439	50.126	51.156	0.020691					103	38	4	0	0	0	5.3912E-07	2	11653	11653;11697		159.1	84.172	1	3726500			36651	8743	21565	21566	44334;44335	44334					0.019325130176866878
QYLSSIQHL	9	Unmodified	_QYLSSIQHL_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2723388671875	2	544.790381	1087.56621	0.93252	0.00050803	-0.12037	-6.5575E-05	0.81215	0.00044245	544.790359709485	48.52	0.51194	48.567	48.314	48.826	0.047523					41	18	3	0	0	0	0.15943	1	11129	11129		39.95	13.066	1	623790			36652	569	21566	21567	44336	44336					0.025928414719373905
QYLSSIQHL	9	Unmodified	_QYLSSIQHL_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2718505859375	2	544.790381	1087.56621	0.80642	0.00043933	-0.22153	-0.00012069	0.5849	0.00031865	544.7902064298078	48.435	0.63411	48.478	48.038	48.672	0.043324					47	23	3	0	0	0	0.11234	1	11090	11090		51.63	24.746	1	575380			36653	569	21566	21567	44337	44337					0.025928414719373905
QYMELFNKI	9	Oxidation (M)	_QYM(Oxidation (M))ELFNKI_		QYM(1)ELFNKI		QYM(170)ELFNKI	0	0	1		ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.2997436523438	2	601.299724	1200.5849	0.72818	0.00043785	0.40695	0.0002447	1.1351	0.00068255	601.2996513860131	54.123	1.0045	54.123	53.622	54.626	0					91	36	3	0	0	0	2.32E-07	2	12809	12756;12809		171.09	81.685	1	1255500			36654	3172	21567	21568	44338;44339	44339		393			-0.007373649485089118
QYMELFNKI	9	Oxidation (M)	_QYM(Oxidation (M))ELFNKI_		QYM(1)ELFNKI		QYM(130)ELFNKI	0	0	1		ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.2996826171875	2	601.299724	1200.5849	0.54098	0.00032529	0.39192	0.00023566	0.9329	0.00056095	601.2997599692716	53.849	0.86577	53.905	53.638	54.504	0.056255					80	32	3	0	0	0	0.00019464	2	12735	12735;12782		133.05	67.817	1	1237500			36655	3172	21567	21568	44340;44341	44340		393			-0.007373649485089118
QYMELFNKI	9	Oxidation (M)	_QYM(Oxidation (M))ELFNKI_		QYM(1)ELFNKI		QYM(170)ELFNKI	0	0	1		ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	ENSG00000124641|ENST00000265350|MED20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.2999877929688	2	601.299724	1200.5849	0.54319	0.00032662	0.65849	0.00039595	1.2017	0.00072257	601.2997593847177	54.302	0.97947	54.286	53.865	54.845	-0.015923					86	34	4	0	0	0	2.32E-07	1	12818	12818		171.09	95.325	1	1269300			36656	3172	21567	21568	44342	44342		393			-0.007373649485089118
QYMERLQLL	9	Oxidation (M)	_QYM(Oxidation (M))ERLQLL_		QYM(1)ERLQLL		QYM(160)ERLQLL	0	0	1		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.319091796875	2	605.318448	1208.62234	0.55037	0.00033315	-0.045576	-2.7588E-05	0.50479	0.00030556	605.3184117691866	52.67	0.9027	52.67	52.408	53.311	0					79	32	3	0	0	0	4.3828E-07	3	12349	12349;12403;12455		163.04	117.34	1	5117600			36657	6698	21568	21569	44343;44344;44345	44343		767			0.02637726317107081
QYMERLQLL	9	Oxidation (M)	_QYM(Oxidation (M))ERLQLL_		QYM(1)ERLQLL		QYM(210)ERLQLL	0	0	1		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.3187255859375	2	605.318448	1208.62234	0.67536	0.00040881	-0.19812	-0.00011993	0.47724	0.00028888	605.3183081628111	52.612	0.95668	52.663	52.363	53.32	0.050571					92	34	5	0	0	0	1.6153E-16	3	12365	12321;12365;12410		208.15	162.45	1	5045800			36658	6698	21568	21569	44346;44347;44348	44347		767			0.02637726317107081
QYMERLQLL	9	Oxidation (M)	_QYM(Oxidation (M))ERLQLL_		QYM(1)ERLQLL		QYM(180)ERLQLL	0	0	1		ENST00000495589.5_1_1:155181271-155183486:+|nuORF;nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	ENST00000495589.5_1_1:155181271-155183486:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.3187255859375	2	605.318448	1208.62234	0.31296	0.00018944	0.092623	5.6066E-05	0.40559	0.00024551	605.3185230661439	52.811	1.0712	52.81	52.495	53.566	-0.00080872					105	39	5	0	0	0	2.4752E-08	3	12424	12380;12424;12470		179.17	129.62	1	5474200			36659	6698	21568	21569	44349;44350;44351	44350		767			0.02637726317107081
QYMKIISSF	9	Oxidation (M)	_QYM(Oxidation (M))KIISSF_		QYM(1)KIISSF		QYM(96)KIISSF	0	0	1		ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.7893676757812	2	566.788992	1131.56343	0.51955	0.00029447	0.44383	0.00025156	0.96338	0.00054603	566.7891958396451	47.927	1.011	47.927	47.493	48.504	0					85	35	4	0	0	0	0.0037449	1	10897	10897		96.367	33.794	1	5901900			36660	6468	21569	21570	44352	44352		754			0.002912500227921555
QYMKIISSF	9	Oxidation (M)	_QYM(Oxidation (M))KIISSF_		QYM(1)KIISSF		QYM(80)KIISSF	0	0	1		ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.7893676757812	2	566.788992	1131.56343	0.72534	0.00041111	0.23534	0.00013339	0.96068	0.0005445	566.7891321927165	47.802	1.067	47.85	47.482	48.549	0.04752					102	39	4	0	0	0	0.0098873	1	10868	10868		79.596	17.024	1	6948600			36661	6468	21569	21570	44353	44353		754			0.002912500227921555
QYMKIISSF	9	Oxidation (M)	_QYM(Oxidation (M))KIISSF_		QYM(1)KIISSF		QYM(86)KIISSF	0	0	1		ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.3118896484375	2	566.788992	1131.56343	0.49981	0.00028329	0.50197	0.00028451	1.0018	0.0005678	566.7892345250452	47.772	0.97514	47.815	47.455	48.43	0.04332					93	36	4	0	0	0	0.016005	1	10859	10859		85.642	31.809	1	5391800			36662	6468	21569	21570	44354	44354		754			0.002912500227921555
QYMNTVVNF	9	Oxidation (M)	_QYM(Oxidation (M))NTVVNF_		QYM(1)NTVVNF		QYM(63)NTVVNF	0	0	1		nc|ENSG00000134291|Q9BVX2-2|TMEM106C	nc|ENSG00000134291|Q9BVX2-2|TMEM106C	nc|ENSG00000134291|Q9BVX2-2|TMEM106C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.8053588867188	2	566.260599	1130.50665	0.27101	0.00015346	-0.64727	-0.00036653	-0.37627	-0.00021306	566.2602164532099	55.523	0.55226	55.523	55.302	55.854	0					42	19	3	0	0	0	0.075169	1	13331	13331		62.573	14.824	1	538990			36663	12705	21570	21571	44355	44355		974			-0.05338797533750039
QYMNTVVNF	9	Oxidation (M)	_QYM(Oxidation (M))NTVVNF_		QYM(1)NTVVNF		QYM(63)NTVVNF	0	0	1		nc|ENSG00000134291|Q9BVX2-2|TMEM106C	nc|ENSG00000134291|Q9BVX2-2|TMEM106C	nc|ENSG00000134291|Q9BVX2-2|TMEM106C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.76220703125	2	566.260599	1130.50665	0.37613	0.00021299	-0.7123	-0.00040335	-0.33617	-0.00019036	566.260079319791	55.703	0.55738	55.684	55.408	55.965	-0.019077					38	20	3	0	0	0	0.023967	1	13330	13330		62.573	14.824	1	549730			36664	12705	21570	21571	44356	44356		974			-0.05338797533750039
QYNDGLSHF	9	Unmodified	_QYNDGLSHF_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3146362304688	2	540.740888	1079.46722	0.55729	0.00030135	0.87008	0.00047049	1.4274	0.00077184	540.7414560046557	40.799	0.49688	40.891	40.693	41.19	0.09267					27	18	2	0	0	0	0.25323	1	8725	8725		10.074	3.8681	1	218530			36665	2461	21571	21572	44357	44357					-0.0693318149294555
QYNDGLSHF	9	Unmodified	_QYNDGLSHF_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3146362304688	2	540.740888	1079.46722	0.38651	0.000209	0.69546	0.00037606	1.082	0.00058506	540.7411016362793	40.788	0.42892	40.888	40.694	41.123	0.099407					26	15	3	0	0	0	0.24848	1	8700	8700		13.906	5.3128	1	238730			36666	2461	21571	21572	44358	44358					-0.0693318149294555
QYNDGLSHF	9	Unmodified	_QYNDGLSHF_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	540.740888	1079.46722	0.28444	0.00015381	1.0113	0.00054687	1.2958	0.00070068	540.7413576237449	41.284	0.43089	41.284	41.01	41.441	0	0.26331	0.00013173	NaN	13.906	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257840			36667	2461	21571	21572							-0.0693318149294555
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5	nc|ENSG00000151208|Q8TDM6-4|DLG5	nc|ENSG00000151208|Q8TDM6-4|DLG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2857666015625	2	568.285797	1134.55704	0.20467	0.00011631	-0.019294	-1.0965E-05	0.18537	0.00010534	568.2856698275501	24.982	0.70919	24.982	24.736	25.445	0					70	24	4	0	0	0	0.00056175	2	3935	3892;3935		128.37	101.48	1	380520			36668	4944	21572	21573	44359;44360	44360					-0.004855070937082928
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5	nc|ENSG00000151208|Q8TDM6-4|DLG5	nc|ENSG00000151208|Q8TDM6-4|DLG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2857666015625	2	568.285797	1134.55704	0.2041	0.00011599	-0.072091	-4.0968E-05	0.13201	7.502E-05	568.2857815473462	25.113	0.67285	25.057	24.78	25.453	-0.055931					72	23	4	0	0	0	0.00056175	1	3940	3940		128.37	101.48	1	460290			36669	4944	21572	21573	44361	44361					-0.004855070937082928
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5	nc|ENSG00000151208|Q8TDM6-4|DLG5	nc|ENSG00000151208|Q8TDM6-4|DLG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2858276367188	2	568.285797	1134.55704	-0.13949	-7.9271E-05	0.2169	0.00012326	0.07741	4.3991E-05	568.2860174691183	25.041	0.75005	25.01	24.765	25.515	-0.03141					70	25	4	0	0	0	0.012929	1	3907	3907		74.929	53.182	1	413220			36670	4944	21572	21573	44362	44362					-0.004855070937082928
QYNPKFQTL	9	Unmodified	_QYNPKFQTL_					0	0	0		nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;GON4L|p.R1117Qfs*40|1|0.04|ENSG00000116580|chr1:155766107-155766123|TCTCTTTGAGGGTCTCC/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;ENST00000496324.5_1_1:155642327-155650230:-|nuORF	nc|ENSG00000163374|Q9H869-5|YY1AP1	nc|ENSG00000163374|Q9H869-5|YY1AP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.7982177734375	2	569.798206	1137.58186	0.15431	8.7923E-05	0.17949	0.00010227	0.3338	0.0001902	569.7981913787996	42.769	0.63243	42.769	42.517	43.149	0					53	22	3	0	0	0	0.00010125	1	9335	9335		140.63	94.612	1	1464000			36671	2732	21573	21574	44363	44363					0.018571279890011283
QYNPKFQTL	9	Unmodified	_QYNPKFQTL_					0	0	0		nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;GON4L|p.R1117Qfs*40|1|0.04|ENSG00000116580|chr1:155766107-155766123|TCTCTTTGAGGGTCTCC/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;ENST00000496324.5_1_1:155642327-155650230:-|nuORF	nc|ENSG00000163374|Q9H869-5|YY1AP1	nc|ENSG00000163374|Q9H869-5|YY1AP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.7980346679688	2	569.798206	1137.58186	0.26282	0.00014976	0.15038	8.5684E-05	0.4132	0.00023544	569.7980881860065	42.483	0.56662	42.569	42.295	42.861	0.085201					59	20	4	0	0	0	0.00010125	1	9233	9233		140.63	81.954	1	1484200			36672	2732	21573	21574	44364	44364					0.018571279890011283
QYNPKFQTL	9	Unmodified	_QYNPKFQTL_					0	0	0		nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;GON4L|p.R1117Qfs*40|1|0.04|ENSG00000116580|chr1:155766107-155766123|TCTCTTTGAGGGTCTCC/-|frameshift_variant;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;ENST00000496324.5_1_1:155642327-155650230:-|nuORF	nc|ENSG00000163374|Q9H869-5|YY1AP1	nc|ENSG00000163374|Q9H869-5|YY1AP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.7982788085938	2	569.798206	1137.58186	0.23411	0.00013339	0.23624	0.00013461	0.47034	0.000268	569.798121640542	42.383	0.67522	42.474	42.177	42.853	0.091362					54	23	3	0	0	0	1.6536E-07	1	9207	9207		173.69	121.42	1	1519300			36673	2732	21573	21574	44365	44365					0.018571279890011283
QYNPLPIEY	9	Unmodified	_QYNPLPIEY_					0	0	0		nc|ENSG00000134278|Q08AE8-3|SPIRE1;nc|ENSG00000134278|Q08AE8-5|SPIRE1;nc|ENSG00000134278|Q08AE8-2|SPIRE1;ENSG00000134278|ENST00000409402|SPIRE1;nc|ENSG00000134278|Q08AE8-4|SPIRE1	nc|ENSG00000134278|Q08AE8-3|SPIRE1	nc|ENSG00000134278|Q08AE8-3|SPIRE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.8467407226562	2	568.784764	1135.55498	0.29461	0.00016757	0.058576	3.3317E-05	0.35318	0.00020089	568.7847000290187	68.476	0.51038	68.476	68.275	68.786	0					29	18	2	0	0	0	0.18123	1	17256	17256		34.402	13.948	1	374410			36674	3770	21574	21575	44366	44366					-0.0073798062219339045
QYNTYPIKL	9	Unmodified	_QYNTYPIKL_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3087158203125	2	570.308406	1138.60226	0.28096	0.00016024	0.1829	0.00010431	0.46387	0.00026455	570.3084098037307	52.415	1.1024	52.415	52.098	53.201	0					108	39	4	0	0	0	4.1496E-11	3	12316	12266;12316;12356		189.73	132.01	1	12386000			36675	732	21575	21576	44367;44368;44369	44368					0.038502986487856106
QYNTYPIKL	9	Unmodified	_QYNTYPIKL_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3086547851562	2	570.308406	1138.60226	0.41379	0.00023599	0.10172	5.8014E-05	0.51552	0.000294	570.3083567064028	52.346	1.0994	52.397	52.036	53.135	0.050575					118	39	4	0	0	0	2.0102E-16	3	12283	12235;12283;12334		203.64	154.08	1	11946000			36676	732	21575	21576	44370;44371;44372	44371					0.038502986487856106
QYNTYPIKL	9	Unmodified	_QYNTYPIKL_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.3087158203125	2	570.308406	1138.60226	0.14525	8.2839E-05	0.41354	0.00023584	0.55879	0.00031868	570.3085173288858	52.546	1.1408	52.546	52.034	53.175	-0.00080872					121	41	4	0	0	0	2.0102E-16	4	12333	12284;12333;12377;12427		203.64	137.18	1	11706000			36677	732	21575	21576	44373;44374;44375;44376	44374					0.038502986487856106
QYNTYPIKLF	10	Unmodified	_QYNTYPIKLF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	643.8428955078125	2	643.842613	1285.67067	0.37247	0.00023981	0.097967	6.3075E-05	0.47044	0.00030289	643.8426028093206	67.078	0.8792	67.078	66.768	67.647	0					103	30	5	0	0	0	1.0905E-08	3	16838	16789;16838;16882		166.77	109.05	1	2813100			36678	732	21576	21577	44377;44378;44379	44378					0.03926543228635637
QYNTYPIKLF	10	Unmodified	_QYNTYPIKLF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	643.8428344726562	2	643.842613	1285.67067	0.39447	0.00025397	0.047585	3.0637E-05	0.44205	0.00028461	643.8425793446805	66.937	0.89919	67.021	66.71	67.609	0.083832					92	31	4	0	0	0	6.9688E-14	3	16794	16747;16794;16842		195.04	137.32	1	3080800			36679	732	21576	21577	44380;44381;44382	44381					0.03926543228635637
QYNTYPIKLF	10	Unmodified	_QYNTYPIKLF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	643.8428344726562	2	643.842613	1285.67067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.45	1	67.528	67.028	68.028	0.078041								0	0	0	0.29474	1	16930	16930		28.495	20.339	1				36680	732	21576	21577	44383	44383					0.03926543228635637
QYNTYPIKLF	10	Unmodified	_QYNTYPIKLF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	643.8428344726562	2	643.842613	1285.67067	0.23951	0.00015421	0.17704	0.00011399	0.41655	0.00026819	643.8426420702139	67.083	1.024	67.066	66.814	67.838	-0.016296					95	35	5	0	0	0	1.7694E-13	3	16789	16789;16836;16881		182.24	124.99	1	3171500			36681	732	21576	21577	44384;44385;44386	44384					0.03926543228635637
QYPAQLQQ	8	Unmodified	_QYPAQLQQ_					0	0	0			REV__ENSG00000260456|ENST00000567970|C16orf95	REV__ENSG00000260456|ENST00000567970|C16orf95	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2323303222656	2	488.248349	974.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.066	1	73.066	72.566	73.566	0								0	0	0	0.36169	1	18657	18657		9.3474	0	1		+		36682	19278	21577	21578	44387	44387					-0.0061168962496367385
QYPEVKEFF	9	Unmodified	_QYPEVKEFF_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.2650146484375	2	593.792589	1185.57063	0.16132	9.5792E-05	-0.92594	-0.00054982	-0.76462	-0.00045402	594.7942738443908	60.311	0.40583	60.311	60.035	60.441	0					31	14	3	0	0	0	0.23749	1	14699	14699		15.248	2.206	1	430640			36683	7271	21578	21579	44388	44388					-0.0147369410515239
QYPEVKEFF	9	Unmodified	_QYPEVKEFF_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	593.792589	1185.57063	0.36296	0.00021552	-0.14978	-8.8937E-05	0.21318	0.00012659	593.7924123847689	60.467	0.34564	60.456	60.168	60.514	-0.011486	0.072312	0.00045688	NaN	15.248	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367340			36684	7271	21578	21579							-0.0147369410515239
QYPFHVPLL	9	Unmodified	_QYPFHVPLL_					0	0	0		ENSG00000226979|ENST00000418386|LTA	ENSG00000226979|ENST00000418386|LTA	ENSG00000226979|ENST00000418386|LTA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7932739257812	2	557.30821	1112.60187	0.37719	0.00021021	-0.13622	-7.5916E-05	0.24097	0.00013429	557.3081601253199	72.07	1.1767	72.07	71.462	72.639	0					101	42	3	0	0	0	0.20344	1	18262	18262		23.148	1.6114	1	591520			36685	8454	21579	21580	44389	44389					0.050069237196112226
QYPFHVPLL	9	Unmodified	_QYPFHVPLL_					0	0	0		ENSG00000226979|ENST00000418386|LTA	ENSG00000226979|ENST00000418386|LTA	ENSG00000226979|ENST00000418386|LTA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.309814453125	2	557.30821	1112.60187	0.43463	0.00024222	0.11593	6.4609E-05	0.55056	0.00030683	557.3083899482803	72.072	1.279	72.128	71.537	72.816	0.056572					101	46	3	0	0	0	0.10075	1	18390	18390		38.151	22.304	1	549210			36686	8454	21579	21580	44390	44390					0.050069237196112226
QYPGRSLVF	9	Unmodified	_QYPGRSLVF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7879638671875	2	533.787641	1065.56073	0.587	0.00031333	1.054	0.0005626	1.641	0.00087593	533.7879107299794	50.048	1.3555	50.048	49.65	51.006	0					113	49	3	0	0	0	0.016005	1	11567	11567		85.642	57.155	1	4052600			36687	1364	21580	21581	44391	44391					0.030571626801247476
QYPGRSLVF	9	Unmodified	_QYPGRSLVF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7879638671875	2	533.787641	1065.56073	0.68336	0.00036477	0.97745	0.00052175	1.6608	0.00088652	533.7878692205293	50.015	0.95939	50.06	49.695	50.654	0.044891					100	35	3	0	0	0	0.08298	1	11510	11510		51.63	24.746	1	4443900			36688	1364	21580	21581	44392	44392					0.030571626801247476
QYPGRSLVF	9	Unmodified	_QYPGRSLVF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7880249023438	2	533.787641	1065.56073	0.84226	0.00044959	0.86009	0.0004591	1.7023	0.00090869	533.7878196402261	50.049	1.5121	50.069	49.644	51.156	0.020695					125	56	3	0	0	0	0.050251	1	11543	11543		71.922	43.435	1	4185700			36689	1364	21580	21581	44393	44393					0.030571626801247476
QYPLQTFAI	9	Unmodified	_QYPLQTFAI_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000462436.1_1_7:97484616-97487685:-|nuORF;nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3302612304688	2	540.78985	1079.56515	0.28981	0.00015672	-0.29429	-0.00015915	-0.0044885	-2.4273E-06	540.7897755896105	76.235	0.9968	76.235	75.592	76.588	0					52	35	2	0	0	0	0.23749	1	19609	19609		15.248	15.248	1	234560			36690	934	21581	21582	44394	44394					0.028546271030336356
QYPLQTFAI	9	Unmodified	_QYPLQTFAI_					0	0	0		nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000462436.1_1_7:97484616-97487685:-|nuORF;nc|ENSG00000070669|P08243-3|ASNS	nc|ENSG00000070669|P08243-2|ASNS	nc|ENSG00000070669|P08243-2|ASNS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3302612304688	2	540.78985	1079.56515	0.56991	0.0003082	0.10806	5.8439E-05	0.67797	0.00036664	540.790013019127	76.268	0.9351	76.237	75.69	76.625	-0.031487					43	33	2	0	0	0	0.24471	1	19612	19612		12.241	12.241	1	215780			36691	934	21581	21582	44395	44395					0.028546271030336356
QYPNPLPVL	9	Unmodified	_QYPNPLPVL_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7926025390625	2	520.792392	1039.57023	0.29096	0.00015153	0.2565	0.00013358	0.54746	0.00028511	520.7924192706882	73.396	1.009	73.396	72.935	73.944	0					92	35	3	0	0	0	0.013258	2	18795	18795;18844		74.423	32.328	1	1627500			36692	6127	21582	21583	44396;44397	44396					0.05202930965651831
QYPNPLPVL	9	Unmodified	_QYPNPLPVL_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7925415039062	2	520.792392	1039.57023	0.2581	0.00013442	0.26814	0.00013964	0.52624	0.00027406	520.7924401997732	73.429	1.0292	73.483	72.898	73.927	0.053841					91	36	3	0	0	0	0.019896	2	18768	18768;18821		64.236	30.134	1	1523000			36693	6127	21582	21583	44398;44399	44398					0.05202930965651831
QYPNPLPVL	9	Unmodified	_QYPNPLPVL_					0	0	0		nc|ENSG00000166887|Q96JC1|VPS39;ENSG00000166887|ENST00000318006|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	nc|ENSG00000166887|Q96JC1|VPS39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7924194335938	2	520.792392	1039.57023	0.38033	0.00019807	0.16467	8.5758E-05	0.54499	0.00028383	520.7923417917926	73.462	1.1066	73.433	72.954	74.06	-0.029297					106	39	4	0	0	0	0.013258	1	18789	18789		74.423	32.328	1	1808300			36694	6127	21582	21583	44400	44400					0.05202930965651831
QYPVIIHLI	9	Unmodified	_QYPVIIHLI_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3318481445312	2	548.331685	1094.64882	0.45514	0.00024957	0.38292	0.00020997	0.83806	0.00045953	548.3317465355623	71.242	2.1269	71.242	70.512	72.639	0					212	76	4	0	0	0	0.00049634	2	18156	18078;18156		129.2	75.625	1	5543000			36695	838	21583	21584	44401;44402	44402					0.10527783270754298
QYPVIIHLI	9	Unmodified	_QYPVIIHLI_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.331787109375	2	548.331685	1094.64882	0.51074	0.00028006	0.27135	0.00014879	0.78209	0.00042885	548.3316862761459	71.229	2.0843	71.29	70.493	72.577	0.060783					224	75	4	0	0	0	0.0040585	1	18146	18146		93.883	49.476	1	5974300			36696	838	21583	21584	44403	44403					0.10527783270754298
QYPVIIHLI	9	Unmodified	_QYPVIIHLI_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3318481445312	2	548.331685	1094.64882	0.58427	0.00032037	0.24736	0.00013563	0.83162	0.000456	548.3316756523782	71.321	2.2251	71.296	70.437	72.662	-0.024864					222	79	4	0	0	0	0.0040585	1	18159	18159		93.883	49.476	1	5919000			36697	838	21583	21584	44404	44404					0.10527783270754298
QYQNVLTLW	9	Unmodified	_QYQNVLTLW_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.L1332Qfs*9|1|0.18|ENSG00000151914|chr6:56628119-56628129|GTAGTACTTCA/-|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.267822265625	2	582.806031	1163.59751	0.093342	5.44E-05	0.2824	0.00016459	0.37574	0.00021899	582.8059180535739	81.796	0.41924	81.865	81.65	82.069	0.068985					32	17	2	0	0	0	0.22674	1	21346	21346		22.736	4.5899	1	159910			36698	273;12761	21584	21585	44405	44405					0.02225414506051493
QYQNVLTLW	9	Unmodified	_QYQNVLTLW_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.L1332Qfs*9|1|0.18|ENSG00000151914|chr6:56628119-56628129|GTAGTACTTCA/-|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	582.806031	1163.59751	0.30916	0.00018018	0.31262	0.0001822	0.62178	0.00036238	582.8059689891801	81.865	0.47915	81.865	81.631	82.11	0	0.0041207	0.00018257	NaN	22.736	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189140			36699	273;12761	21584	21585							0.02225414506051493
QYQNVLTLW	9	Unmodified	_QYQNVLTLW_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.L1332Qfs*9|1|0.18|ENSG00000151914|chr6:56628119-56628129|GTAGTACTTCA/-|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	582.806031	1163.59751	0.35652	0.00020778	-0.091202	-5.3153E-05	0.26532	0.00015463	582.8055247520982	81.878	0.51049	81.854	81.599	82.11	-0.02404	-0.0073382	-0.00028813	NaN	22.736	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198970			36700	273;12761	21584	21585							0.02225414506051493
QYQQIISRL	9	Unmodified	_QYQQIISRL_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.8033447265625	2	574.824755	1147.63496	0.63153	0.00036302	-0.57276	-0.00032924	0.058768	3.3781E-05	574.8242060039652	50.78	0.23525	50.78	50.713	50.949	0					14	8	2	0	0	0	0.20381	1	11827	11827		29.841	4.4413	1	317790			36701	1929	21585	21586	44406	44406					0.0670450577167685
QYQQIISRL	9	Unmodified	_QYQQIISRL_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.8034057617188	2	574.824755	1147.63496	0.55791	0.0003207	-0.31015	-0.00017828	0.24776	0.00014242	574.824483551933	50.932	0.28751	50.942	50.807	51.094	0.0095673					16	10	2	0	0	0	0.21026	1	11836	11836		28.495	4.4739	1	269240			36702	1929	21585	21586	44407	44407					0.0670450577167685
QYQSRSVHRF	10	Unmodified	_QYQSRSVHRF_					0	0	0			REV__ENSG00000143006|ENST00000371445|DMRTB1	REV__ENSG00000143006|ENST00000371445|DMRTB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.7455139160156	3	436.558299	1306.65307	0.31868	0.00013912	-1.2419	-0.00054217	-0.92324	-0.00040305	436.89204585676055	36.199	0.47094	36.286	36.059	36.529	0.086246					20	16	2	0	0	0	0.32082	1	7264	7264		3.3196	0.47636	1	276570	+		36703	16142	21586	21587	44408	44408					0.012006407463559299
QYQSRSVHRF	10	Unmodified	_QYQSRSVHRF_					0	0	0			REV__ENSG00000143006|ENST00000371445|DMRTB1	REV__ENSG00000143006|ENST00000371445|DMRTB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	436.558299	1306.65307	0.18391	8.0285E-05	-1.4295	-0.00062404	-1.2455	-0.00054375	436.55761420273234	36.21	0.42107	36.293	36.09	36.511	0.082355	0.0034179	-0.00017376	NaN	3.3196	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247840	+		36704	16142	21586	21587							0.012006407463559299
QYRDLRSLYK	10	Unmodified	_QYRDLRSLYK_					0	0	0		CTNND2|p.T1088Rfs*15|1|0.2|ENSG00000169862|chr5:10988190-10988191|TG/-|frameshift_variant;nc|ENSG00000169862|Q9UQB3-2|CTNND2;ENSG00000169862|ENST00000304623|CTNND2	CTNND2|p.T1088Rfs*15|1|0.2|ENSG00000169862|chr5:10988190-10988191|TG/-|frameshift_variant	CTNND2|p.T1088Rfs*15|1|0.2|ENSG00000169862|chr5:10988190-10988191|TG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.77783203125	3	447.913971	1340.72008	-0.09099	-4.0756E-05	-1.0915	-0.00048888	-1.1825	-0.00052964	448.24732598370645	28.154	0.56311	28.15	27.822	28.385	-0.0042572					27	19	2	0	0	0	0.31867	1	4933	4933		7.9454	0	1	244390			36705	247	21587	21588	44409	44409					0.06335251237442208
QYRDLRSLYK	10	Unmodified	_QYRDLRSLYK_					0	0	0		CTNND2|p.T1088Rfs*15|1|0.2|ENSG00000169862|chr5:10988190-10988191|TG/-|frameshift_variant;nc|ENSG00000169862|Q9UQB3-2|CTNND2;ENSG00000169862|ENST00000304623|CTNND2	CTNND2|p.T1088Rfs*15|1|0.2|ENSG00000169862|chr5:10988190-10988191|TG/-|frameshift_variant	CTNND2|p.T1088Rfs*15|1|0.2|ENSG00000169862|chr5:10988190-10988191|TG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.7778625488281	3	447.913971	1340.72008	-0.11619	-5.2042E-05	-1.1063	-0.00049553	-1.2225	-0.00054757	448.2473541945535	28.145	0.3628	28.145	27.905	28.268	0.00046921					20	12	2	0	0	0	0.31867	1	4903	4903		7.9454	0	1	105030			36706	247	21587	21588	44410	44410					0.06335251237442208
QYRIDFEQF	9	Unmodified	_QYRIDFEQF_					0	0	0		ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.3637084960938	2	623.29857	1244.58259	0.14333	8.9338E-05	4.2881E-05	2.6728E-08	0.14337	8.9365E-05	623.2984739485379	62.639	0.43724	62.736	62.521	62.958	0.096989					32	15	3	0	0	0	0.075356	1	15455	15455		63.961	36.332	1	422700			36707	2252	21588	21589	44411	44411					-0.02992077361977863
QYRIDFEQF	9	Unmodified	_QYRIDFEQF_					0	0	0		ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	ENSG00000109436|ENST00000442267|TBC1D9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.36376953125	2	623.29857	1244.58259	0.16764	0.00010449	0.54115	0.0003373	0.7088	0.00044179	623.2992417614188	62.74	0.26606	62.731	62.621	62.887	-0.0085564					23	9	3	0	0	0	0.067563	1	15475	15475		66.457	32.055	1	351780			36708	2252	21588	21589	44412	44412					-0.02992077361977863
QYRMSEYIF	9	Unmodified	_QYRMSEYIF_					0	0	0			REV__ENSG00000137869|ENST00000396402|CYP19A1	REV__ENSG00000137869|ENST00000396402|CYP19A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2970886230469	3	412.862108	1235.56449	-0.14669	-6.0562E-05	1.0892	0.0004497	0.94254	0.00038914	412.8624508638297	30.993	0.84093	30.993	30.553	31.394	0					37	29	2	0	0	0	0.26099	1	5796	5796		2.9952	1.151	1	73045	+		36709	15890	21589	21590	44413	44413					-0.04386535608318809
QYRMSEYIF	9	Unmodified	_QYRMSEYIF_					0	0	0			REV__ENSG00000137869|ENST00000396402|CYP19A1	REV__ENSG00000137869|ENST00000396402|CYP19A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	412.862108	1235.56449	0.10429	4.3059E-05	1.3429	0.00055445	1.4472	0.00059751	412.8624204543752	30.975	0.75999	31.002	30.733	31.493	0.027157	-0.037938	0.00049579	NaN	2.9952	45	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103010	+		36710	15890	21589	21590							-0.04386535608318809
QYRTSAERM	9	Unmodified	_QYRTSAERM_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.S1823Wfs*15|1|0.26|ENSG00000124201|chr20:49247550-49247556|AGGCCAG/-|frameshift_variant	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2875366210938	2	571.274572	1140.53459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.033	1	22.945	22.445	23.445	-0.087608								0	0	0	0.2489	1	3328	3328		6.7232	0.51738	1				36711	3140	21590	21591	44414	44414					-0.030054745536517657
QYRVSMLKM	9	Unmodified	_QYRVSMLKM_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;ENSG00000170638|ENST00000380909|TRABD;nc|ENSG00000170638|Q9H4I3-2|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3047485351562	2	578.304287	1154.59402	-0.050602	-2.9263E-05	0.12078	6.985E-05	0.070182	4.0587E-05	578.3042356197581	13.671	0.35265	13.572	13.416	13.768	-0.099291					22	12	3	0	0	0	0.34536	1	512	512		2.0598	0	1	45921			36712	6471	21591	21592	44415	44415					0.022907051361698905
QYSELYHDF	9	Unmodified	_QYSELYHDF_					0	0	0		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1;nc|ENSG00000138079|Q07837-3|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8159790039062	2	601.261653	1200.50875	0.65841	0.00039588	-4.0893	-0.0024587	-3.4309	-0.0020629	601.261821245795	51.201	0.40186	51.201	51.055	51.456	0					27	14	3	0	0	0	0.24289	1	11953	11953		18.146	10.857	1	199080			36713	4114	21592	21593	44416	44416					-0.08348045524303416
QYSELYHDF	9	Unmodified	_QYSELYHDF_					0	0	0		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1;nc|ENSG00000138079|Q07837-3|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.8162231445312	2	601.261653	1200.50875	0.45788	0.00027531	-3.4423	-0.0020697	-2.9844	-0.0017944	601.2618078142988	51.407	0.39119	51.416	51.169	51.561	0.0095673					29	14	3	0	0	0	0.24848	1	11943	11943		13.906	6.6168	1	319000			36714	4114	21592	21593	44417	44417					-0.08348045524303416
QYSIISNVF	9	Unmodified	_QYSIISNVF_					0	0	0		ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7794799804688	2	535.779482	1069.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.497	1	76.497	75.997	76.997	0								0	0	0	0.010523	1	19702	19702		79.596	33.575	1				36715	5614	21593	21594	44418	44418					0.0124203672337444
QYSIISNVF	9	Unmodified	_QYSIISNVF_					0	0	0		ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.779541015625	2	535.779482	1069.54441	0.16784	8.9928E-05	-0.77475	-0.0004151	-0.60691	-0.00032517	536.2802732391755	76.258	0.70103	76.312	76.189	76.89	0.053413					76	24	4	0	0	0	0.015924	1	19666	19666		70.332	24.632	1	2849300			36716	5614	21593	21594	44419	44419					0.0124203672337444
QYSIISNVF	9	Unmodified	_QYSIISNVF_					0	0	0		ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7796020507812	2	535.779482	1069.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.479	1	76.447	75.947	76.947	-0.031487								0	0	0	0.00062564	1	19685	19685		99.755	52.007	1				36717	5614	21593	21594	44420	44420					0.0124203672337444
QYSIISNVF	9	Unmodified	_QYSIISNVF_					0	0	0		ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	ENSG00000162769|ENST00000366971|FLVCR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7794189453125	2	535.779482	1069.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.662	1	76.631	76.131	77.131	-0.031487								0	0	0	0.11882	1	19740	19740		41.956	17.935	1				36718	5614	21593	21594	44421	44421					0.0124203672337444
QYSMEYFQF	9	Oxidation (M)	_QYSM(Oxidation (M))EYFQF_		QYSM(1)EYFQF		QYSM(70)EYFQF	0	0	1		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.7581787109375	2	629.757889	1257.50123	0.18852	0.00011872	0.31431	0.00019794	0.50283	0.00031666	629.7579905818911	69.608	0.65943	69.608	69.339	69.999	0					60	23	3	0	0	0	0.015924	2	17581	17581;17646		70.332	52.186	1	666150			36719	3159	21594	21595	44422;44423	44422		391			-0.1172252111623493
QYSMEYFQF	9	Oxidation (M)	_QYSM(Oxidation (M))EYFQF_		QYSM(1)EYFQF		QYSM(70)EYFQF	0	0	1		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.7581787109375	2	629.757889	1257.50123	0.050849	3.2022E-05	0.35279	0.00022217	0.40364	0.0002542	629.7581098523088	69.579	0.6555	69.645	69.366	70.021	0.066048					55	22	3	0	0	0	0.015924	1	17608	17608		70.332	48.795	1	506400			36720	3159	21594	21595	44424	44424		391			-0.1172252111623493
QYSMEYFQF	9	Oxidation (M)	_QYSM(Oxidation (M))EYFQF_		QYSM(1)EYFQF		QYSM(80)EYFQF	0	0	1		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.75830078125	2	629.757889	1257.50123	0.22897	0.00014419	0.19039	0.0001199	0.41936	0.00026409	629.757920050588	69.647	0.81296	69.625	69.324	70.137	-0.022087					65	29	3	0	0	0	0.035405	1	17590	17590		79.596	51.968	1	735090			36721	3159	21594	21595	44425	44425		391			-0.1172252111623493
QYSNAFDVF	9	Unmodified	_QYSNAFDVF_					0	0	0		ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.7460327148438	2	545.745639	1089.47673	0.52123	0.00028446	0.1063	5.8012E-05	0.62753	0.00034247	545.7457098158261	71.803	1.3371	71.803	71.462	72.799	0					137	48	4	0	0	0	0.11201	1	18364	18364		36.506	18.36	1	5317800			36722	4360	21595	21596	44426	44426					-0.06443413207443882
QYSNAFDVF	9	Unmodified	_QYSNAFDVF_					0	0	0		ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.74609375	2	545.745639	1089.47673	0.6287	0.00034311	0.025849	1.4107E-05	0.65455	0.00035722	545.7456733260584	71.711	1.4152	71.767	71.459	72.874	0.056572					141	51	4	0	0	0	0.0045335	1	18200	18200		106.94	76.304	1	4992200			36723	4360	21595	21596	44427	44427					-0.06443413207443882
QYSNAFDVF	9	Unmodified	_QYSNAFDVF_					0	0	0		ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	ENSG00000141232|ENST00000499247|TOB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.74609375	2	545.745639	1089.47673	0.67399	0.00036783	-0.07232	-3.9468E-05	0.60167	0.00032836	545.7456139936123	71.863	1.2922	71.836	71.477	72.769	-0.027275					130	45	5	0	0	0	0.0015055	1	18284	18284		118.07	87.432	1	5618900			36724	4360	21595	21596	44428	44428					-0.06443413207443882
QYSPLLAAF	9	Unmodified	_QYSPLLAAF_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2717590332031	2	505.271293	1008.52803	0.43583	0.00022021	-0.12764	-6.4494E-05	0.30819	0.00015572	505.2714393206941	79.364	1.3297	79.364	78.992	80.322	0					177	51	5	0	0	0	9.3868E-05	3	20550	20507;20550;20587		141.83	70.894	1	10843000			36725	1193	21596	21597	44429;44430;44431	44430					0.024109555572863428
QYSPLLAAF	9	Unmodified	_QYSPLLAAF_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2717590332031	2	505.271293	1008.52803	0.41547	0.00020993	-0.13553	-6.8479E-05	0.27994	0.00014145	505.27144429676383	79.281	1.4872	79.342	79.002	80.489	0.061417					191	60	5	0	0	0	0.00094673	4	20561	20478;20516;20561;20607		123.45	65.979	1	11243000			36726	1193	21596	21597	44432;44433;44434;44435	44434					0.024109555572863428
QYSPLLAAF	9	Unmodified	_QYSPLLAAF_					0	0	0		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2717590332031	2	505.271293	1008.52803	0.48233	0.00024371	-0.22396	-0.00011316	0.25836	0.00013054	505.27137990992173	79.444	1.3221	79.415	79.024	80.346	-0.028923					172	49	5	0	0	0	5.2996E-06	3	20558	20511;20558;20607		156.16	98.685	1	10877000			36727	1193	21596	21597	44436;44437;44438	44437					0.024109555572863428
QYSQHISLF	9	Unmodified	_QYSQHISLF_					0	0	0		ENST00000486873.2_1_2:169699570-169711975:+|nuORF;nc|ENSG00000163072|Q8IVI9-3|NOSTRIN;nc|ENSG00000163072|Q8IVI9-2|NOSTRIN;ENSG00000163072|ENST00000317647|NOSTRIN;nc|ENSG00000163072|Q8IVI9-4|NOSTRIN	ENST00000486873.2_1_2:169699570-169711975:+|nuORF	ENST00000486873.2_1_2:169699570-169711975:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7830810546875	2	561.782556	1121.55056	0.36728	0.00020633	0.83126	0.00046698	1.1985	0.00067332	561.7828294737272	53.018	0.56463	53.018	52.849	53.414	0					31	20	2	0	0	0	0.004681	1	12514	12514		88.954	32.777	1	695000			36728	5645	21597	21598	44439	44439					-0.005354450451022785
QYSQHISLF	9	Unmodified	_QYSQHISLF_					0	0	0		ENST00000486873.2_1_2:169699570-169711975:+|nuORF;nc|ENSG00000163072|Q8IVI9-3|NOSTRIN;nc|ENSG00000163072|Q8IVI9-2|NOSTRIN;ENSG00000163072|ENST00000317647|NOSTRIN;nc|ENSG00000163072|Q8IVI9-4|NOSTRIN	ENST00000486873.2_1_2:169699570-169711975:+|nuORF	ENST00000486873.2_1_2:169699570-169711975:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7833251953125	2	561.782556	1121.55056	0.6457	0.00036274	1.0031	0.00056353	1.6488	0.00092627	561.7828362207815	53.033	0.6068	53.089	52.746	53.353	0.056259					47	21	4	0	0	0	0.0028626	1	12502	12502		103.35	47.176	1	650050			36729	5645	21597	21598	44440	44440					-0.005354450451022785
QYSQHISLF	9	Unmodified	_QYSQHISLF_					0	0	0		ENST00000486873.2_1_2:169699570-169711975:+|nuORF;nc|ENSG00000163072|Q8IVI9-3|NOSTRIN;nc|ENSG00000163072|Q8IVI9-2|NOSTRIN;ENSG00000163072|ENST00000317647|NOSTRIN;nc|ENSG00000163072|Q8IVI9-4|NOSTRIN	ENST00000486873.2_1_2:169699570-169711975:+|nuORF	ENST00000486873.2_1_2:169699570-169711975:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7828369140625	2	561.782556	1121.55056	0.33385	0.00018755	0.84366	0.00047395	1.1775	0.00066151	561.7828061019535	53.253	0.50607	53.243	52.976	53.482	-0.0096092					34	18	2	0	0	0	0.014206	1	12557	12557		72.968	20.7	1	665690			36730	5645	21597	21598	44441	44441					-0.005354450451022785
QYSQHISLF	9	Unmodified	_QYSQHISLF_					0	0	0		ENST00000486873.2_1_2:169699570-169711975:+|nuORF;nc|ENSG00000163072|Q8IVI9-3|NOSTRIN;nc|ENSG00000163072|Q8IVI9-2|NOSTRIN;ENSG00000163072|ENST00000317647|NOSTRIN;nc|ENSG00000163072|Q8IVI9-4|NOSTRIN	ENST00000486873.2_1_2:169699570-169711975:+|nuORF	ENST00000486873.2_1_2:169699570-169711975:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.782556	1121.55056	0.50279	0.00028246	-0.95402	-0.00053595	-0.45123	-0.00025349	561.7834161403915	52.62	0.10801	52.67	52.603	52.711	0.050575	-0.17402	-0.0019884	NaN	88.954	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97695			36731	5645	21597	21598							-0.005354450451022785
QYSTEPGRYRF	11	Unmodified	_QYSTEPGRYRF_					0	0	0		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.5616760253906	3	468.561597	1402.66296	0.14919	6.9906E-05	0.055723	2.611E-05	0.20492	9.6016E-05	468.56160590942994	36.035	1.2403	36.035	35.719	36.959	0					119	44	5	0	0	0	0.0011487	3	7295	7249;7295;7349		94.801	83.17	1	2954900			36732	4114	21598	21599	44442;44443;44444	44443					-0.022262160389118435
QYSTEPGRYRF	11	Unmodified	_QYSTEPGRYRF_					0	0	0		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.5616455078125	3	468.561597	1402.66296	0.21824	0.00010226	0.0051927	2.4331E-06	0.22343	0.00010469	468.5615850819499	35.937	1.0191	36.02	35.682	36.701	0.082355					89	36	4	0	0	0	0.023365	3	7260	7210;7260;7316		60.943	47.425	1	3415400			36733	4114	21598	21599	44445;44446;44447	44446					-0.022262160389118435
QYSTEPGRYRF	11	Unmodified	_QYSTEPGRYRF_					0	0	0		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.5616455078125	3	468.561597	1402.66296	0.3938	0.00018452	-0.20233	-9.4805E-05	0.19147	8.9715E-05	468.5614757002578	35.895	1.0357	35.981	35.645	36.68	0.08625					114	36	5	0	0	0	0.0078098	3	7244	7200;7244;7297		74.306	64.542	1	2999900			36734	4114	21598	21599	44448;44449;44450	44449					-0.022262160389118435
QYSYIDFKF	9	Unmodified	_QYSYIDFKF_					0	0	0		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;RNF216-EIF2AK1|2|fusion;RNF216-EIF2AK1|1|fusion	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.7926635742188	2	605.792589	1209.57063	0.55435	0.00033582	0.070757	4.2864E-05	0.6251	0.00037868	605.7924635764721	68.824	0.55531	68.824	68.592	69.147	0					47	19	3	0	0	0	0.013404	1	17368	17368		74.2	38.155	1	285650			36735	438	21599	21600	44451	44451					-0.02577694105161754
QYSYIDFKF	9	Unmodified	_QYSYIDFKF_					0	0	0		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;RNF216-EIF2AK1|2|fusion;RNF216-EIF2AK1|1|fusion	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.7926635742188	2	605.792589	1209.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.808	1	68.88	68.38	69.38	0.071938								0	0	0	0.062149	1	17351	17351		57.249	15.155	1				36736	438	21599	21600	44452	44452					-0.02577694105161754
QYSYIDFKF	9	Unmodified	_QYSYIDFKF_					0	0	0		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;RNF216-EIF2AK1|2|fusion;RNF216-EIF2AK1|1|fusion	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.7921142578125	2	605.792589	1209.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.868	1	68.849	68.349	69.349	-0.019157								0	0	0	0.0054584	1	17361	17361		87.258	19.914	1				36737	438	21599	21600	44453	44453					-0.02577694105161754
QYSYIDFKF	9	Unmodified	_QYSYIDFKF_					0	0	0		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;ENSG00000011275|ENST00000389902|RNF216;RNF216-EIF2AK1|2|fusion;RNF216-EIF2AK1|1|fusion	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.7916870117188	2	605.792589	1209.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.098	1	69.078	68.578	69.578	-0.019157								0	0	0	0.15548	1	17431	17431		33.445	6.5612	1				36738	438	21599	21600	44454	44454					-0.02577694105161754
QYTDLLRLF	9	Unmodified	_QYTDLLRLF_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134765625	2	584.821681	1167.62881	0.29754	0.00017401	0.579	0.00033861	0.87654	0.00051262	584.8219004523493	81.104	0.57381	81.104	80.904	81.478	0					56	27	3	0	0	0	0.24467	1	21143	21143		17.113	7.039	1	330040			36739	8358	21600	21601	44455	44455					0.05169987540125476
QYTDLLRLF	9	Unmodified	_QYTDLLRLF_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3564453125	2	584.821681	1167.62881	0.012232	7.1533E-06	0.88163	0.0005156	0.89387	0.00052275	584.8219880525827	81.073	0.71603	81.138	80.831	81.547	0.065102					74	35	3	0	0	0	0.20881	1	21106	21106		27.629	15.989	1	435220			36740	8358	21600	21601	44456	44456					0.05169987540125476
QYTDLLRLF	9	Unmodified	_QYTDLLRLF_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3564453125	2	584.821681	1167.62881	0.34496	0.00020174	0.32614	0.00019073	0.6711	0.00039248	584.8216620246383	81.185	0.51546	81.161	80.941	81.457	-0.02404					54	21	3	0	0	0	0.18936	1	21138	21138		26.268	13.226	1	503840			36741	8358	21600	21601	44457	44457					0.05169987540125476
QYTHKIYHL	9	Unmodified	_QYTHKIYHL_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;PITPNB|p.Q189Rfs*8|1|0.29|ENSG00000180957|chr22:27860211-27860211|G/-|frameshift_variant;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.819091796875	2	601.819473	1201.62439	0.31126	0.00018732	0.1412	8.4979E-05	0.45247	0.0002723	601.8195903035663	25.771	0.54391	25.771	25.562	26.106	0					31	18	2	0	0	0	0.034444	2	4154	4154;4200		58.679	38.225	1	388560			36742	6782	21601	21602	44458;44459	44458					0.031645231171978594
QYTHKIYHL	9	Unmodified	_QYTHKIYHL_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;PITPNB|p.Q189Rfs*8|1|0.29|ENSG00000180957|chr22:27860211-27860211|G/-|frameshift_variant;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.81982421875	2	601.819473	1201.62439	0.25877	0.00015573	0.19759	0.00011891	0.45636	0.00027465	601.8196351036539	25.807	0.65065	25.768	25.556	26.206	-0.038671					37	22	2	0	0	0	0.10197	2	4160	4160;4207		37.974	23.136	1	378850			36743	6782	21601	21602	44460;44461	44460					0.031645231171978594
QYTHKIYHL	9	Unmodified	_QYTHKIYHL_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;PITPNB|p.Q189Rfs*8|1|0.29|ENSG00000180957|chr22:27860211-27860211|G/-|frameshift_variant;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.81982421875	2	601.819473	1201.62439	0.21712	0.00013067	0.67095	0.00040379	0.88807	0.00053446	601.8198739195321	25.888	0.66321	25.866	25.635	26.298	-0.022238					48	23	3	0	0	0	0.10197	3	4169	4169;4218;4243		37.974	27.9	1	281170			36744	6782	21601	21602	44462;44463;44464	44462					0.031645231171978594
QYTQALEKF	9	Unmodified	_QYTQALEKF_					0	0	0		nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.2903442382812	2	564.290214	1126.56587	0.3912	0.00022075	-1.0864	-0.00061305	-0.6952	-0.00039229	564.2898690694723	45.143	1.1727	45.143	44.659	45.832	0					94	42	4	0	0	0	0.0008224	1	10113	10113		125.04	53.116	1	1328500			36745	4977	21602	21603	44465	44465					0.007654217520666862
QYTQALEKF	9	Unmodified	_QYTQALEKF_					0	0	0		nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.2898559570312	2	564.290214	1126.56587	0.47144	0.00026603	-1.0548	-0.00059523	-0.58339	-0.0003292	564.2897577654406	44.83	0.79787	44.898	44.463	45.261	0.068573					79	28	4	0	0	0	9.5135E-08	1	9952	9952		176.43	108.35	1	1311300			36746	4977	21602	21603	44466	44466					0.007654217520666862
QYTQALEKF	9	Unmodified	_QYTQALEKF_					0	0	0		nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	nc|ENSG00000151693|O43150-2|ASAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.290283203125	2	564.290214	1126.56587	0.43352	0.00024463	-1.1002	-0.00062084	-0.66669	-0.00037621	564.2898103675235	44.855	1.3241	44.93	44.389	45.713	0.075047					97	48	3	0	0	0	9.5135E-08	2	9976	9925;9976		176.43	108.35	1	1447200			36747	4977	21602	21603	44467;44468	44468					0.007654217520666862
QYVDFHNQL	9	Unmodified	_QYVDFHNQL_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.27880859375	2	582.277638	1162.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.94	1	47.94	47.44	48.44	0								0	0	0	2.8195E-24	1	10928	10928		199.75	120.15	1				36748	3825	21603	21604	44469	44469					-0.03404633050490702
QYVDFHNQL	9	Unmodified	_QYVDFHNQL_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.2781372070312	2	582.277638	1162.54072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.102	1	48.102	47.602	48.602	0								0	0	0	2.8195E-24	1	10979	10979		199.75	120.15	1				36749	3825	21603	21604	44470	44470					-0.03404633050490702
QYVEDDEDSL	10	Unmodified	_QYVEDDEDSL_					0	0	0			REV__nc|ENSG00000135679|Q00987-2|MDM2	REV__nc|ENSG00000135679|Q00987-2|MDM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.83551025390625	3	404.834941	1211.48299	0.072983	2.9546E-05	1.3331	0.00053969	1.4061	0.00056924	404.835548975391	29.627	0.75356	29.627	29.441	30.194	0					40	26	3	0	0	0	0.40085	1	5352	5352		3.3196	0.47636	1	168860	+		36750	15756	21604	21605	44471	44471					-0.1142898455723298
QYVEVLPKWFH	11	Unmodified	_QYVEVLPKWFH_					0	0	0			REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2709045410156	3	482.590717	1444.75032	0.32383	0.00015628	-3.7214	-0.0017959	-3.3976	-0.0016397	482.5885643006962	35.757	0.38784	35.843	35.671	36.059	0.08625					24	13	3	0	0	0	0.33284	1	7154	7154		3.3557	0.51244	1	176990	+		36751	14149	21605	21606	44472	44472					0.045736099026271404
QYVIYTCVSS	10	Unmodified	_QYVIYTCVSS_					0	0	0			REV__nc|ENSG00000170471|Q86X10-2|RALGAPB	REV__nc|ENSG00000170471|Q86X10-2|RALGAPB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.2781982421875	2	581.776082	1161.53761	0.63828	0.00037134	-0.63177	-0.00036755	0.0065076	3.786E-06	582.277186787961	48.076	2.1071	48.123	47.772	49.879	0.04752					240	77	5	0	0	0	0.29978	1	10914	10914		20.454	20.454	1	11964000	+		36752	17581	21606	21607	44473	44473					-0.036696442195079726
QYVNEVFNF	9	Unmodified	_QYVNEVFNF_					0	0	0		nc|ENSG00000023171|Q3KR37-3|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B	nc|ENSG00000023171|Q3KR37-3|GRAMD1B;ENSG00000023171|ENST00000635736|GRAMD1B	nc|ENSG00000023171|Q3KR37-3|GRAMD1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.2875366210938	2	580.274564	1158.53457	0.34676	0.00020122	-1.4799	-0.00085875	-1.1331	-0.00065753	580.2735522039768	75.063	0.45619	75.115	74.971	75.427	0.052361					18	16	2	0	0	0	0.20381	1	19222	19222		29.841	13.993	1	131370			36753	12567;519	21607	21608	44474	44474					-0.03835151282009974
QYVNEVFNF	9	Unmodified	_QYVNEVFNF_					0	0	0		nc|ENSG00000023171|Q3KR37-3|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B	nc|ENSG00000023171|Q3KR37-3|GRAMD1B;ENSG00000023171|ENST00000635736|GRAMD1B	nc|ENSG00000023171|Q3KR37-3|GRAMD1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	580.274564	1158.53457	0.30163	0.00017503	-1.6603	-0.00096346	-1.3587	-0.00078843	580.2735089979979	75.203	0.69937	75.203	75.012	75.711	0	0.043878	-0.00013391	NaN	29.841	27	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142020			36754	12567;519	21607	21608							-0.03835151282009974
QYVNVMNML	9	2 Oxidation (M)	_QYVNVM(Oxidation (M))NM(Oxidation (M))L_		QYVNVM(1)NM(1)L		QYVNVM(120)NM(120)L	0	0	2		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1;nc|ENSG00000138079|Q07837-4|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2612915039062	2	572.262284	1142.51002	0.41148	0.00023547	-0.84454	-0.0004833	-0.43306	-0.00024782	572.2618319550933	50.104	1.055	50.104	49.923	50.978	0					56	38	2	0	0	0	0.00094673	1	11597	11597		123.45	77.751	1	692110			36755	4114	21608	21609	44475	44475		526;527			-0.05553870751373324
QYVNVMNML	9	2 Oxidation (M)	_QYVNVM(Oxidation (M))NM(Oxidation (M))L_		QYVNVM(1)NM(1)L		QYVNVM(48)NM(48)L	0	0	2		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1;nc|ENSG00000138079|Q07837-4|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.8071899414062	2	572.262284	1142.51002	0.25755	0.00014739	-0.81617	-0.00046706	-0.55862	-0.00031968	572.2618514204681	49.82	0.35141	49.82	49.572	49.923	0					21	12	2	0	0	0	0.12563	1	11538	11538		47.749	26.159	1	360870			36756	4114	21608	21609	44476	44476		526;527			-0.05553870751373324
QYVNVMNML	9	2 Oxidation (M)	_QYVNVM(Oxidation (M))NM(Oxidation (M))L_		QYVNVM(1)NM(1)L		QYVNVM(120)NM(120)L	0	0	2		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1;nc|ENSG00000138079|Q07837-4|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2623291015625	2	572.262284	1142.51002	0.83036	0.00047518	-1.4803	-0.00084713	-0.64996	-0.00037195	572.2615071919	50.091	0.99389	50.136	49.877	50.871	0.044891					66	36	3	0	0	0	0.00094673	1	11699	11699		123.45	83.501	1	646820			36757	4114	21608	21609	44477	44477		526;527			-0.05553870751373324
QYVNVMNML	9	2 Oxidation (M)	_QYVNVM(Oxidation (M))NM(Oxidation (M))L_		QYVNVM(1)NM(1)L		QYVNVM(140)NM(140)L	0	0	2		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1;nc|ENSG00000138079|Q07837-4|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2618408203125	2	572.262284	1142.51002	0.73939	0.00042313	-1.2737	-0.00072891	-0.53434	-0.00030578	572.2616479853272	50.119	1.1706	50.14	49.909	51.079	0.020691					68	43	2	0	0	0	0.00012782	1	11571	11571		136.33	99.827	1	673150			36758	4114	21608	21609	44478	44478		526;527			-0.05553870751373324
QYVNVMNML	9	2 Oxidation (M)	_QYVNVM(Oxidation (M))NM(Oxidation (M))L_					0	0	2		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1;nc|ENSG00000138079|Q07837-4|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	572.262284	1142.51002	0.34251	0.000196	-1.4669	-0.00083943	-1.1244	-0.00064343	572.261492992845	49.774	0.25612	49.819	49.621	49.877	0.044891	0.0081283	-0.00095189	NaN	47.749	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314690			36759	4114	21608	21609				526;527			-0.05553870751373324
QYVNVMNML	9	2 Oxidation (M)	_QYVNVM(Oxidation (M))NM(Oxidation (M))L_					0	0	2		nc|ENSG00000138079|Q07837-5|SLC3A1;nc|ENSG00000138079|Q07837-7|SLC3A1;SLC3A1|p.S556Kfs*7|1|0.35|ENSG00000138079|chr2:44320245-44320246|-/A|frameshift_variant;nc|ENSG00000138079|Q07837-6|SLC3A1;ENSG00000138079|ENST00000260649|SLC3A1;nc|ENSG00000138079|Q07837-2|SLC3A1;nc|ENSG00000138079|Q07837-4|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	nc|ENSG00000138079|Q07837-5|SLC3A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	572.262284	1142.51002	0.21754	0.00012449	0.35808	0.00020492	0.57563	0.00032941	572.2621593643539	49.773	0.36531	49.793	49.511	49.876	0.020695	-0.017225	0.0011368	NaN	47.749	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337230			36760	4114	21608	21609				526;527			-0.05553870751373324
QYVSAFSKL	9	Unmodified	_QYVSAFSKL_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.6575317382812	2	521.782025	1041.5495	0.29335	0.00015307	-0.43653	-0.00022778	-0.14318	-7.471E-05	521.7822994884126	49.399	0.68799	49.431	49.149	49.837	0.032043					39	24	3	0	0	0	0.19208	1	11370	11370		27.223	0	1	954580			36761	5947	21609	21610	44479	44479					0.030383405859993218
QYVTQINRL	9	Unmodified	_QYVTQINRL_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-2|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8172607421875	2	567.81693	1133.61931	0.23221	0.00013185	3.3273	0.0018893	3.5595	0.0020212	567.8170367492176	43.432	0.84225	43.432	43.062	43.904	0					81	30	4	0	0	0	0.00058103	1	9575	9575		129.77	79.839	1	813910			36762	3130	21610	21611	44480	44480					0.05784219254610434
QYVTQINRL	9	Unmodified	_QYVTQINRL_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-2|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.8170776367188	2	567.81693	1133.61931	0.53788	0.00030542	0.14049	7.9773E-05	0.67837	0.00038519	567.8168809109164	43.217	0.88196	43.295	42.772	43.654	0.077515					47	31	2	0	0	0	0.04299	1	9530	9530		55.503	25.662	1	932340			36763	3130	21610	21611	44481	44481					0.05784219254610434
QYVTQINRL	9	Unmodified	_QYVTQINRL_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-2|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.8167114257812	2	567.81693	1133.61931	0.20986	0.00011916	0.32777	0.00018611	0.53763	0.00030527	567.8170340534795	43.179	0.86461	43.263	42.793	43.657	0.083996					51	31	2	0	0	0	0.074552	1	9514	9514		43.772	18.373	1	861290			36764	3130	21610	21611	44482	44482					0.05784219254610434
QYVVDLTSF	9	Unmodified	_QYVVDLTSF_					0	0	0		ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2799682617188	2	536.27149	1070.52843	0.29608	0.00015878	-1.9799	-0.0010618	-1.6839	-0.00090301	536.2708977748377	75.601	0.11479	75.601	75.534	75.649	0					7	3	3	0	0	0	0.11486	1	19421	19421		48.346	17.709	1	599690			36765	3905	21611	21612	44483	44483					-0.004016695135305781
QYVVDLTSF	9	Unmodified	_QYVVDLTSF_					0	0	0		ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2793579101562	2	536.27149	1070.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.455	1	75.508	75.008	76.008	0.052361								0	0	0	0.1351	1	19379	19379		38.176	0.20157	1				36766	3905	21611	21612	44484	44484					-0.004016695135305781
QYVVDLTSF	9	Unmodified	_QYVVDLTSF_					0	0	0		ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	ENST00000487953.1_1_1:233091430-233112053:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2802734375	2	536.27149	1070.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.318	1	76.372	75.872	76.872	0.053413								0	0	0	0.12746	1	19642	19642		39.95	3.8227	1				36767	3905	21611	21612	44485	44485					-0.004016695135305781
QYWQHHPEK	9	Unmodified	_QYWQHHPEK_					0	0	0		nc|ENSG00000185046|Q7Z6G8-9|ANKS1B;nc|ENSG00000185046|Q7Z6G8-8|ANKS1B;nc|ENSG00000185046|Q7Z6G8-10|ANKS1B;nc|ENSG00000185046|Q7Z6G8-7|ANKS1B;nc|ENSG00000185046|Q7Z6G8-2|ANKS1B;nc|ENSG00000185046|Q7Z6G8-5|ANKS1B;nc|ENSG00000185046|Q7Z6G8-4|ANKS1B;nc|ENSG00000185046|Q7Z6G8-3|ANKS1B;nc|ENSG00000185046|Q7Z6G8-6|ANKS1B;nc|ENSG00000185046|Q7Z6G8|ANKS1B;ENSG00000185046|ENST00000683438|ANKS1B	nc|ENSG00000185046|Q7Z6G8-9|ANKS1B	nc|ENSG00000185046|Q7Z6G8-9|ANKS1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.8763732910156	3	418.200111	1251.5785	0.10124	4.2338E-05	0.60677	0.00025375	0.70801	0.00029609	418.20031269072496	26.746	0.4759	26.709	26.435	26.911	-0.036716					54	16	4	0	0	0	0.25756	1	4370	4370		4.1895	4.1895	1	286820			36768	7502	21612	21613	44486	44486					-0.037221220650280884
QYWQHHPEK	9	Unmodified	_QYWQHHPEK_					0	0	0		nc|ENSG00000185046|Q7Z6G8-9|ANKS1B;nc|ENSG00000185046|Q7Z6G8-8|ANKS1B;nc|ENSG00000185046|Q7Z6G8-10|ANKS1B;nc|ENSG00000185046|Q7Z6G8-7|ANKS1B;nc|ENSG00000185046|Q7Z6G8-2|ANKS1B;nc|ENSG00000185046|Q7Z6G8-5|ANKS1B;nc|ENSG00000185046|Q7Z6G8-4|ANKS1B;nc|ENSG00000185046|Q7Z6G8-3|ANKS1B;nc|ENSG00000185046|Q7Z6G8-6|ANKS1B;nc|ENSG00000185046|Q7Z6G8|ANKS1B;ENSG00000185046|ENST00000683438|ANKS1B	nc|ENSG00000185046|Q7Z6G8-9|ANKS1B	nc|ENSG00000185046|Q7Z6G8-9|ANKS1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.2577819824219	3	418.200111	1251.5785	0.0026942	1.1267E-06	0.45809	0.00019157	0.46079	0.0001927	418.2003655215085	27.196	0.65429	27.174	26.839	27.493	-0.021412					63	22	4	0	0	0	0.25992	1	4511	4511		4.5289	4.5289	1	315220			36769	7502	21612	21613	44487	44487					-0.037221220650280884
QYWQHHPEK	9	Unmodified	_QYWQHHPEK_					0	0	0		nc|ENSG00000185046|Q7Z6G8-9|ANKS1B;nc|ENSG00000185046|Q7Z6G8-8|ANKS1B;nc|ENSG00000185046|Q7Z6G8-10|ANKS1B;nc|ENSG00000185046|Q7Z6G8-7|ANKS1B;nc|ENSG00000185046|Q7Z6G8-2|ANKS1B;nc|ENSG00000185046|Q7Z6G8-5|ANKS1B;nc|ENSG00000185046|Q7Z6G8-4|ANKS1B;nc|ENSG00000185046|Q7Z6G8-3|ANKS1B;nc|ENSG00000185046|Q7Z6G8-6|ANKS1B;nc|ENSG00000185046|Q7Z6G8|ANKS1B;ENSG00000185046|ENST00000683438|ANKS1B	nc|ENSG00000185046|Q7Z6G8-9|ANKS1B	nc|ENSG00000185046|Q7Z6G8-9|ANKS1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	418.200111	1251.5785	0.059895	2.5048E-05	0.48762	0.00020392	0.54751	0.00022897	418.2003178248764	27.148	0.79418	27.137	26.851	27.645	-0.01156	-0.018951	6.9241E-05	NaN	4.5289	70	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280440			36770	7502	21612	21613							-0.037221220650280884
RAADLPLR	8	Unmodified	_RAADLPLR_					0	0	0			REV__ENST00000564546.5_1_16:30076568-30077015:+|nuORF	REV__ENST00000564546.5_1_16:30076568-30077015:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.27471923828125	2	456.274701	910.534849	0.039257	1.7912E-05	0.33758	0.00015403	0.37684	0.00017194	456.27471133461023	27.077	0.71655	27.077	26.813	27.53	0					42	24	2	0	0	0	0.32937	1	4546	4546		22.736	0	1	195420	+		36771	22341	21613	21614	44488	44488					0.07600313228510913
RAAKKKAAL	9	Unmodified	_RAAKKKAAL_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.8214416503906	2	478.821818	955.629084	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.068	1	12.068	11.568	12.568	0								0	0	0	0.264	1	16	16		1.8442	1.1539	1				36772	2838	21614	21615	44489	44489					0.14949452050632317
RAALLYKNRTI	11	Unmodified	_RAALLYKNRTI_					0	0	0			REV__nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	REV__nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.2699890136719	3	440.269978	1317.7881	0.069373	3.0543E-05	-0.022014	-9.6922E-06	0.047359	2.0851E-05	440.2699183018077	44.049	0.69976	44.049	43.793	44.493	0					73	25	4	0	0	0	0.39244	1	9728	9728		12.228	0.70971	1	2317500	+		36773	14912	21615	21616	44490	44490					0.14192120888128557
RAAPFSLEY	9	Unmodified	_RAAPFSLEY_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2720336914062	2	527.271824	1052.5291	0.56551	0.00029818	-1.3743	-0.00072461	-0.80876	-0.00042644	527.2716222753247	52.569	0.87842	52.569	52.211	53.09	0					100	31	5	0	0	0	0.03069	1	12422	12422		60.074	23.947	1	3093800			36774	7204	21616	21617	44491	44491					0.004931699261760514
RAAPFSLEY	9	Unmodified	_RAAPFSLEY_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.272216796875	2	527.271824	1052.5291	0.54264	0.00028612	-1.2591	-0.00066387	-0.71642	-0.00037775	527.2717012113616	52.511	0.95924	52.562	52.202	53.161	0.050575					100	34	5	0	0	0	0.016005	1	12302	12302		85.642	41.783	1	2598400			36775	7204	21616	21617	44492	44492					0.004931699261760514
RAAPFSLEY	9	Unmodified	_RAAPFSLEY_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.27197265625	2	527.271824	1052.5291	0.44447	0.00023435	-1.07	-0.00056417	-0.62552	-0.00032982	527.2716923655386	52.727	0.81619	52.726	52.358	53.175	-0.00080872					107	29	5	0	0	0	0.0042138	2	12404	12404;12451		92.653	56.526	1	2948200			36776	7204	21616	21617	44493;44494	44493					0.004931699261760514
RAAQPNSLLLR	11	Unmodified	_RAAQPNSLLLR_					0	0	0			REV__nc|ENSG00000166578|Q96DY2-3|IQCD	REV__nc|ENSG00000166578|Q96DY2-3|IQCD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8687744140625	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.16	1	112.17	111.67	112.67	0.0131								0	0	0	0.37501	1	29197	29197		2.7352	0.23671	1		+		36777	17330	21617	21618	44495	44495					0.11614974819917734
RAAQRQGL	8	Unmodified	_RAAQRQGL_					0	0	0		ENST00000497493.1_1_21:38599661-38600668:-|nuORF	ENST00000497493.1_1_21:38599661-38600668:-|nuORF	ENST00000497493.1_1_21:38599661-38600668:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2688903808594	2	450.262125	898.509697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.082	1	36.164	35.664	36.664	0.082355								0	0	0	0.36336	1	7293	7293		8.5933	2.2392	1				36778	11247	21618	21619	44496	44496					0.05638258425949516
RAAQVFFLK	9	Unmodified	_RAAQVFFLK_					0	0	0		ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3217163085938	2	540.321651	1078.62875	0.46075	0.00024895	-0.107	-5.7816E-05	0.35374	0.00019113	540.321573741831	42.959	0.65491	42.959	42.678	43.333	0					63	23	3	0	0	0	0.010453	3	9378	9378;9426;9453		78.728	34.87	1	2097300			36779	2928	21619	21620	44497;44498;44499	44497					0.09258032330785682
RAAQVFFLK	9	Unmodified	_RAAQVFFLK_					0	0	0		ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3217163085938	2	540.321651	1078.62875	0.34577	0.00018683	0.011892	6.4253E-06	0.35766	0.00019325	540.3216403660025	42.726	0.78514	42.811	42.514	43.299	0.085197					78	28	5	0	0	0	0.014888	2	9306	9306;9354		71.922	28.064	1	2241000			36780	2928	21619	21620	44500;44501	44500					0.09258032330785682
RAAQVFFLK	9	Unmodified	_RAAQVFFLK_					0	0	0		ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	ENSG00000120129|ENST00000239223|DUSP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3217163085938	2	540.321651	1078.62875	0.36947	0.00019963	-0.1316	-7.1107E-05	0.23787	0.00012853	540.3215355957641	42.651	0.75716	42.742	42.441	43.198	0.091362					78	27	4	0	0	0	0.016723	2	9315	9265;9315		69.105	32.978	1	2133500			36781	2928	21619	21620	44502;44503	44503					0.09258032330785682
RAARLPPA	8	Unmodified	_RAARLPPA_					0	0	0			REV__ENST00000328914.4_1_7:4802311-4802611:+|nuORF	REV__ENST00000328914.4_1_7:4802311-4802611:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.9018859863281	2	426.264136	850.51372	-0.16608	-7.0792E-05	-0.29006	-0.00012364	-0.45614	-0.00019444	426.264187154151	51.721	0.43178	51.731	51.612	52.044	0.0095634					22	15	2	0	0	0	0.34319	1	12126	12126		5.7604	0	1	195500	+		36782	20020	21620	21621	44504	44504					0.08248347919641219
RAARLPPA	8	Unmodified	_RAARLPPA_					0	0	0			REV__ENST00000328914.4_1_7:4802311-4802611:+|nuORF	REV__ENST00000328914.4_1_7:4802311-4802611:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	426.264136	850.51372	-0.028048	-1.1956E-05	-0.093891	-4.0022E-05	-0.12194	-5.1978E-05	426.2641470008831	51.676	0.34857	51.676	51.536	51.885	0	-0.027187	5.273E-05	NaN	5.7604	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358550	+		36783	20020	21620	21621							0.08248347919641219
RAARSVRAAPL	11	Unmodified	_RAARSVRAAPL_					0	0	0			REV__ENST00000337959.8_1_22:43266013-43266163:-|nuORF	REV__ENST00000337959.8_1_22:43266013-43266163:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3568115234375	2	584.357088	1166.69962	0.54901	0.00032082	-0.63088	-0.00036866	-0.081868	-4.784E-05	584.356552371031	84.781	0.58887	84.781	84.405	84.994	0					73	21	4	0	0	0	0.46277	1	22243	22243		2.9952	0.93549	1	1255600	+		36784	20089	21621	21622	44505	44505					0.122941253683166
RACYRIHL	8	Unmodified	_RACYRIHL_					0	0	0			REV__ENSG00000198689|ENST00000630721|SLC9A6	REV__ENSG00000198689|ENST00000630721|SLC9A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2483520507812	2	516.282003	1030.54945	0.0085649	4.4219E-06	-0.6967	-0.0003597	-0.68814	-0.00035527	516.2811302589787	14.771	0.45671	14.666	14.396	14.853	-0.10466					22	15	2	0	0	0	0.344	1	756	756		2.5775	0.27475	1	56788	+		36785	18845	21622	21623	44506	44506					0.03540062105003017
RADLRALLQR	10	Unmodified	_RADLRALLQR_					0	0	0			REV__ENSG00000269313|ENST00000595224|MAGIX	REV__ENSG00000269313|ENST00000595224|MAGIX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2245178222656	3	404.582556	1210.72584	-0.33636	-0.00013608	-0.87238	-0.00035295	-1.2087	-0.00048904	404.9161804513396	17.748	0.4867	17.63	17.441	17.928	-0.11739					26	16	2	0	0	0	0.32068	1	1719	1719		3.5871	0.85186	1	50568	+		36786	19308	21623	21624	44507	44507					0.12890394539772387
RADSSRASL	9	Unmodified	_RADSSRASL_					0	0	0		ENSG00000162910|ENST00000336520|MRPL55;nc|ENSG00000162910|Q7Z7F7-2|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.75439453125	2	481.75433	961.494107	-0.11258	-5.4238E-05	0.43604	0.00021006	0.32346	0.00015583	481.75434439903853	14.293	0.42332	14.293	14.138	14.561	0					33	14	3	0	0	0	0.22935	1	678	678		19.362	3.2128	1	167250			36787	5629	21624	21625	44508	44508					0.01181927118227577
RADSSRASL	9	Unmodified	_RADSSRASL_					0	0	0		ENSG00000162910|ENST00000336520|MRPL55;nc|ENSG00000162910|Q7Z7F7-2|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.75396728515625	2	481.75433	961.494107	-0.067128	-3.2339E-05	1.2091	0.00058251	1.142	0.00055017	481.7542946619032	14.409	0.46063	14.304	14.105	14.565	-0.10466					52	15	5	0	0	0	0.2869	1	707	707		10.8	0.72558	1	159710			36788	5629	21624	21625	44509	44509					0.01181927118227577
RAEPSRKLVA	10	Unmodified	_RAEPSRKLVA_					0	0	0			REV__nc|ENSG00000008323|Q3KR16-2|PLEKHG6	REV__nc|ENSG00000008323|Q3KR16-2|PLEKHG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.818603515625	2	563.838197	1125.66184	0.11021	6.2138E-05	-1.7211	-0.00097043	-1.6109	-0.00090829	563.8370671659237	14.779	0.31204	14.673	14.539	14.851	-0.10606					21	10	3	0	0	0	0.39227	1	881	881		4.897	0.56777	1	76275	+		36789	13400	21625	21626	44510	44510					0.10403614382857995
RAETSGMTIQ	10	Unmodified	_RAETSGMTIQ_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2612915039062	2	547.268955	1092.52336	0.50842	0.00027824	2.4278	0.0013287	2.9362	0.0016069	547.2704444592524	75.738	1.1356	75.79	75.024	76.16	0.052361					130	41	5	0	0	0	0.33104	1	19402	19402		16.149	0	1	1228100	+		36790	15947	21626	21627	44511	44511					-0.019202966477905647
RAFAQKISRT	10	Unmodified	_RAFAQKISRT_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.E1876Lfs*12|1|0.03|ENSG00000116641|chr1:62476133-62476134|-/GTGCAATTTTGTTTGAGAAAGA|frameshift_variant;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3429565429688	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.81	1	115.83	115.33	116.33	0.018738								0	0	0	0.38202	1	30071	30071		0.40072	0	1				36791	2734;12665	21627	21628	44512	44512					0.09147016757128767
RAFDSAVAK	9	Unmodified	_RAFDSAVAK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7640686035156	2	482.764166	963.513779	0.020903	1.0091E-05	-0.11592	-5.596E-05	-0.095013	-4.5869E-05	482.76414331000086	18.783	1.0762	18.783	18.299	19.375	0					84	37	4	0	0	0	0.10812	1	2030	2030		37.075	3.6297	1	397270			36792	3619	21628	21629	44513	44513					0.030563031289943865
RAFDSAVAK	9	Unmodified	_RAFDSAVAK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.76397705078125	2	482.764166	963.513779	0.057269	2.7647E-05	-0.40933	-0.00019761	-0.35206	-0.00016996	482.76397201513424	18.94	1.0423	18.822	18.267	19.309	-0.11739					100	36	5	0	0	0	0.22935	1	2060	2060		19.362	1.2156	1	436340			36793	3619	21628	21629	44514	44514					0.030563031289943865
RAFDSAVAK	9	Unmodified	_RAFDSAVAK_					0	0	0		nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	nc|ENSG00000132305|Q16891-3|IMMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7639465332031	2	482.764166	963.513779	-9.2835E-05	-4.4817E-08	-0.27637	-0.00013342	-0.27646	-0.00013347	482.7640392358482	18.885	0.9347	18.826	18.458	19.393	-0.058172					107	32	5	0	0	0	0.1645	1	2054	2054		40.239	8.9709	1	464910			36794	3619	21628	21629	44515	44515					0.030563031289943865
RAFFKWRCLPA	11	Unmodified	_RAFFKWRCLPA_					0	0	0		nc|ENSG00000084234|Q06481-6|APLP2	nc|ENSG00000084234|Q06481-6|APLP2	nc|ENSG00000084234|Q06481-6|APLP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.26397705078125	3	465.588653	1393.74413	-0.10805	-5.0305E-05	-1.507	-0.00070166	-1.6151	-0.00075197	465.5880493827555	18.016	0.64357	18.016	17.719	18.363	0					49	21	3	0	0	0	0.33122	1	1766	1766		7.0371	2.9205	1	96608			36795	12598	21629	21630	44516	44516					0.06300813190159715
RAFFKWRCLPA	11	Unmodified	_RAFFKWRCLPA_					0	0	0		nc|ENSG00000084234|Q06481-6|APLP2	nc|ENSG00000084234|Q06481-6|APLP2	nc|ENSG00000084234|Q06481-6|APLP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.263916015625	3	465.588653	1393.74413	-0.038546	-1.7947E-05	-1.6167	-0.00075269	-1.6552	-0.00077064	465.588067536887	18.154	0.63738	18.096	17.794	18.432	-0.058172					45	22	3	0	0	0	0.33296	1	1798	1798		2.6312	0.19645	1	135790			36796	12598	21629	21630	44517	44517					0.06300813190159715
RAFLHPYYF	9	Unmodified	_RAFLHPYYF_					0	0	0		ENST00000568219.5_2_16:23641352-23641448:-|nuORF	ENST00000568219.5_2_16:23641352-23641448:-|nuORF	ENST00000568219.5_2_16:23641352-23641448:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8726806640625	2	607.311284	1212.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.02	1	115	114.5	115.5	-0.020988								0	0	0	0.26704	1	29842	29842		0.6015	0.076735	1				36797	11998	21630	21631	44518	44518					0.010214419511157757
RAFNDPFIQK	10	Unmodified	_RAFNDPFIQK_					0	0	0		nc|ENSG00000120694|Q92598-4|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1	nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-4|HSPH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.3301391601562	2	618.330205	1234.64586	0.33766	0.00020878	0.016894	1.0446E-05	0.35455	0.00021923	618.3302660746228	39.929	0.64386	40.022	39.75	40.394	0.09267					37	22	3	0	0	0	0.25422	1	8481	8481		26.021	13.78	1	294400			36798	12680	21631	21632	44519	44519					0.037919081459449444
RAFNDPFIQK	10	Unmodified	_RAFNDPFIQK_					0	0	0		nc|ENSG00000120694|Q92598-4|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1	nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-4|HSPH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	618.330205	1234.64586	0.35889	0.00022191	-0.052605	-3.2527E-05	0.30628	0.00018938	618.3302865147527	40.245	0.58036	40.245	39.996	40.576	0	0.12873	-0.00012016	NaN	26.021	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220340			36799	12680	21631	21632							0.037919081459449444
RAFNDPFIQK	10	Unmodified	_RAFNDPFIQK_					0	0	0		nc|ENSG00000120694|Q92598-4|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1	nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-4|HSPH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	618.330205	1234.64586	0.28023	0.00017328	0.21747	0.00013447	0.4977	0.00030775	618.3304404485007	39.983	0.49863	40.083	39.817	40.315	0.099403	-0.033851	0.00021383	NaN	26.021	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294010			36800	12680	21631	21632							0.037919081459449444
RAFPVLLRAEN	11	Unmodified	_RAFPVLLRAEN_					0	0	0		ENST00000313349.3_1_2:64861661-64861808:-|nuORF	ENST00000313349.3_1_2:64861661-64861808:-|nuORF	ENST00000313349.3_1_2:64861661-64861808:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.61138916015625	3	429.250695	1284.73025	-0.28659	-0.00012302	0.38504	0.00016528	0.098453	4.2261E-05	429.2507623382728	45.888	0.53326	45.948	45.703	46.236	0.059834					41	18	4	0	0	0	0.33122	1	10335	10335		7.0371	7.0371	1	773110			36801	9330	21632	21633	44520	44520					0.09927858962714708
RAFPVLLRAEN	11	Unmodified	_RAFPVLLRAEN_					0	0	0		ENST00000313349.3_1_2:64861661-64861808:-|nuORF	ENST00000313349.3_1_2:64861661-64861808:-|nuORF	ENST00000313349.3_1_2:64861661-64861808:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	429.250695	1284.73025	-0.059568	-2.557E-05	-0.16232	-6.9678E-05	-0.22189	-9.5247E-05	429.2505416470361	46.066	0.4379	46.066	45.86	46.298	0	0.051968	-0.00029413	NaN	7.0371	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	656080			36802	9330	21632	21633							0.09927858962714708
RAFRLRGWLG	10	Unmodified	_RAFRLRGWLG_					0	0	0			REV__KCNQ1|p.K422Sfs*10|1|0.3|ENSG00000053918|chr11:2588719-2588719|A/-|frameshift_variant	REV__KCNQ1|p.K422Sfs*10|1|0.3|ENSG00000053918|chr11:2588719-2588719|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2440490722656	3	411.243874	1230.70979	0.28198	0.00011596	-0.64234	-0.00026416	-0.36036	-0.0001482	411.2436981021622	91.054	0.3961	91.054	90.859	91.255	0.00046539					51	28	2	0	0	0	0.3994	1	24165	24165		3.5871	0.26742	1	862030	+		36803	13582	21633	21634	44521	44521					0.1036673309354228
RAFRLRGWLG	10	Unmodified	_RAFRLRGWLG_					0	0	0			REV__KCNQ1|p.K422Sfs*10|1|0.3|ENSG00000053918|chr11:2588719-2588719|A/-|frameshift_variant	REV__KCNQ1|p.K422Sfs*10|1|0.3|ENSG00000053918|chr11:2588719-2588719|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	411.243874	1230.70979	-0.03454	-1.4205E-05	-0.39921	-0.00016417	-0.43375	-0.00017838	411.2437360482875	91.033	0.35849	91.033	90.829	91.188	0	-0.0051401	0.00025044	NaN	3.5871	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	571320	+		36804	13582	21633	21634							0.1036673309354228
RAFRLRGWLG	10	Unmodified	_RAFRLRGWLG_					0	0	0			REV__KCNQ1|p.K422Sfs*10|1|0.3|ENSG00000053918|chr11:2588719-2588719|A/-|frameshift_variant	REV__KCNQ1|p.K422Sfs*10|1|0.3|ENSG00000053918|chr11:2588719-2588719|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.243874	1230.70979	0.18801	7.7316E-05	-0.75112	-0.00030889	-0.56312	-0.00023158	411.24365400896096	90.937	0.38541	91.028	90.879	91.264	0.090668	-0.010673	-0.00018372	NaN	3.5871	44	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	572330	+		36805	13582	21633	21634							0.1036673309354228
RAFRLRGWLG	10	Unmodified	_RAFRLRGWLG_					0	0	0			REV__KCNQ1|p.K422Sfs*10|1|0.3|ENSG00000053918|chr11:2588719-2588719|A/-|frameshift_variant	REV__KCNQ1|p.K422Sfs*10|1|0.3|ENSG00000053918|chr11:2588719-2588719|A/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	411.243874	1230.70979	0.28198	0.00011596	-0.64234	-0.00026416	-0.36036	-0.0001482	411.2436981021622	91.054	0.3961	91.054	90.859	91.255	0.00046539	0.015813	-4.9523E-05	NaN	3.5871	51	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	862030	+		36806	13582	21633	21634							0.1036673309354228
RAFRSLAYPY	10	Unmodified	_RAFRSLAYPY_					0	0	0		ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.2242736816406	3	415.224257	1242.65094	-0.127	-5.2732E-05	0.29814	0.00012379	0.17114	7.1062E-05	415.2243460722296	33.085	1.4378	33.085	32.782	34.22	0					99	51	3	0	0	0	0.35961	2	6364	6364;6412		10.899	3.29	1	1474900			36807	8582	21634	21635	44522;44523	44522					0.039322120085671486
RAFRSLAYPY	10	Unmodified	_RAFRSLAYPY_					0	0	0		ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.2242431640625	3	415.224257	1242.65094	0.24498	0.00010172	-0.14017	-5.8202E-05	0.10481	4.3519E-05	415.2241254891025	32.915	0.93458	32.971	32.704	33.639	0.055309					83	33	3	0	0	0	0.33753	2	6318	6318;6361		14.957	2.7434	1	1830000			36808	8582	21634	21635	44524;44525	44524					0.039322120085671486
RAFVAGVLPFK	11	Unmodified	_RAFVAGVLPFK_					0	0	0		ENSG00000137996|ENST00000370128|RTCA;nc|ENSG00000137996|O00442-2|RTCA	ENSG00000137996|ENST00000370128|RTCA	ENSG00000137996|ENST00000370128|RTCA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.2903442382812	2	602.863683	1203.71281	0.56213	0.00033889	1.7097	0.0010307	2.2718	0.0013696	602.8651345994585	54.454	0.43166	54.438	54.224	54.655	-0.015923					24	14	3	0	0	0	0.27558	1	12916	12916		27.223	10.11	1	410540			36809	4103	21635	21636	44526	44526					0.11910563427682064
RAGPRRPVEL	10	Unmodified	_RAGPRRPVEL_					0	0	0			REV__nc|ENSG00000204130|Q8WXA3-1|RUFY2	REV__nc|ENSG00000204130|Q8WXA3-1|RUFY2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8430786132812	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.185	1	79.185	78.685	79.685	0								0	0	0	0.37044	1	20523	20523		6.2058	0	1		+		36810	23166	21636	21637	44527	44527					0.10422436476983421
RAGPWVPL	8	Unmodified	_RAGPWVPL_					0	0	0			REV__ENST00000415253.5_1_8:21916870-21927027:+|nuORF	REV__ENST00000415253.5_1_8:21916870-21927027:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.25396728515625	2	448.261062	894.507572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.269	1	88.266	87.766	88.766	-0.0028381								0	0	0	0.37595	1	23297	23297		2.8892	0	1		+		36811	20807	21637	21638	44528	44528					0.05609829688125956
RAGQPSLP	8	Unmodified	_RAGQPSLP_					0	0	0			REV__ENST00000466999.1_1_20:2640164-2640466:-|nuORF	REV__ENST00000466999.1_1_20:2640164-2640466:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.55023193359375	2	413.232502	824.450451	-0.0036938	-1.5264E-06	0.14718	6.0818E-05	0.14348	5.9291E-05	413.2326378200533	22.44	0.46867	22.395	22.266	22.735	-0.044867					25	15	2	0	0	0	0.34247	1	3136	3136		8.5933	0	1	43593	+		36812	21293	21638	21639	44529	44529					0.03120362411766564
RAGSFREFFV	10	Unmodified	_RAGSFREFFV_					0	0	0			REV__ENSG00000169184|ENST00000302326|MN1	REV__ENSG00000169184|ENST00000302326|MN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8472290039062	2	608.317097	1214.61964	0.51327	0.00031223	0.24564	0.00014943	0.75891	0.00046166	608.3172018729025	84.048	2.7551	84.031	83.11	85.865	-0.016823					236	113	3	0	0	0	0.31143	1	22241	22241		17.113	10.907	1	827390	+		36813	17503	21639	21640	44530	44530					0.02091638974457055
RAGSRALSL	9	Unmodified	_RAGSRALSL_					0	0	0		ENSG00000255181|ENST00000542437|CCDC166	ENSG00000255181|ENST00000542437|CCDC166	ENSG00000255181|ENST00000542437|CCDC166	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.77752685546875	2	465.777608	929.540663	0.061664	2.8722E-05	0.16078	7.4889E-05	0.22245	0.00010361	465.77756619140615	71.49	1.8231	71.49	70.873	72.696	0					199	65	4	0	0	0	0.29176	1	18054	18054		10.074	2.1638	1	2750300			36814	8615	21640	21641	44531	44531					0.07307411740191583
RAHPGQLPV	9	Unmodified	_RAHPGQLPV_					0	0	0			REV__nc|ENSG00000234616|O75564|JRK	REV__nc|ENSG00000234616|O75564|JRK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2587890625	2	487.780151	973.545748	0.32383	0.00015796	-1.6594	-0.00080941	-1.3355	-0.00065145	487.77923291422513	17.333	0.57083	17.272	17.079	17.65	-0.060429					28	19	2	0	0	0	0.25988	1	1545	1545		3.9444	1.6417	1	84628	+		36815	19144	21641	21642	44532	44532					0.057917156028111094
RAHRAGRK	8	Unmodified	_RAHRAGRK_					0	0	0		ENST00000491136.6_1_1:52823963-52826194:-|nuORF;ENST00000460261.5_1_1:52822810-52825784:-|nuORF;nc|ENSG00000154222|Q5T0F9-3|CC2D1B;CC2D1B|p.D819Efs*10|1|0.26|ENSG00000154222|chr1:52353633-52353639|CCTTCCA/-|frameshift_variant;ENSG00000154222|ENST00000284376|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B	ENST00000491136.6_1_1:52823963-52826194:-|nuORF	ENST00000491136.6_1_1:52823963-52826194:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.2904968261719	2	476.289008	950.563464	-0.20586	-9.8049E-05	3.1261	0.0014889	2.9203	0.0013909	476.2909687023869	12.305	0.28189	12.305	12.151	12.433	0					20	9	3	0	0	0	0.46491	1	97	97		0.69038	0	1	33167			36816	89	21642	21643	44533	44533					0.08620475648319825
RAHRTWSI	8	Unmodified	_RAHRTWSI_					0	0	0			REV__ENST00000376214.5_1_9:87285518-87285842:+|nuORF	REV__ENST00000376214.5_1_9:87285518-87285842:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2764282226562	2	513.783225	1025.5519	0.31331	0.00016097	1.5912	0.00081755	1.9046	0.00097853	513.7838668136798	38.569	0.29314	38.666	38.465	38.758	0.097527					12	10	2	0	0	0	0.34319	1	8002	8002		5.7604	0	1	72283	+		36817	20484	21643	21644	44534	44534					0.04014233834323022
RAHSESIKKKV	11	Unmodified	_RAHSESIKKKV_					0	0	0		ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8826904296875	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.45	1	112.45	111.95	112.95	0								0	0	0	0.38126	1	29228	29228		1.1933	0	1				36818	625	21644	21645	44535	44535					0.12211243991396259
RAHSESIKKKV	11	Unmodified	_RAHSESIKKKV_					0	0	0		ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8822631835938	2	641.883136	1281.75172	0.25585	0.00016423	-0.98212	-0.0006304	-0.72626	-0.00046618	641.8820275673618	115.29	0.48271	115.26	114.82	115.3	-0.020988					81	58	2	0	0	0	0.47649	1	29907	29907		1.1933	0	1	43333			36819	625	21644	21645	44536	44536					0.12211243991396259
RAHSESIKKKV	11	Unmodified	_RAHSESIKKKV_					0	0	0		ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8824462890625	2	641.883136	1281.75172	0.25647	0.00016462	-1.0614	-0.00068132	-0.80498	-0.0005167	641.8820063022806	116.27	0.27494	116.25	116.12	116.39	-0.022781					46	33	2	0	0	0	0.47649	1	30136	30136		1.1933	0	1	24244			36820	625	21644	21645	44537	44537					0.12211243991396259
RAHSESIKKKV	11	Unmodified	_RAHSESIKKKV_					0	0	0		ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8591918945312	2	641.883136	1281.75172	0.25594	0.00016428	-1.2232	-0.00078518	-0.9673	-0.0006209	641.8820502180888	113.35	0.26279	113.34	113.24	113.5	-0.017303					41	31	2	0	0	0	0.33324	1	29449	29449		1.1933	0	1	52094			36821	625	21644	21645	44538	44538					0.12211243991396259
RAHSESIKKKV	11	Unmodified	_RAHSESIKKKV_					0	0	0		ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8820190429688	2	641.883136	1281.75172	0.256	0.00016432	-1.0862	-0.00069723	-0.83023	-0.00053291	641.8820038259785	117.06	0.66796	117.04	116.78	117.45	-0.022774					117	80	2	0	0	0	0.33324	1	30315	30315		1.1933	0	1	34764			36822	625	21644	21645	44539	44539					0.12211243991396259
RAHSESIKKKV	11	Unmodified	_RAHSESIKKKV_					0	0	0		ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8589477539062	2	641.883136	1281.75172	0.25644	0.00016461	-0.97282	-0.00062444	-0.71638	-0.00045983	641.8822050598908	104.85	0.12584	104.85	104.81	104.93	0.0018463					28	18	2	0	0	0	0.33324	1	27832	27832		1.1933	0	1	107040			36823	625	21644	21645	44540	44540					0.12211243991396259
RAHSESIKKKV	11	Unmodified	_RAHSESIKKKV_					0	0	0		ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	ENSG00000046774|ENST00000247452|MAGEC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8587646484375	2	641.883136	1281.75172	0.25576	0.00016417	-0.77322	-0.00049631	-0.51746	-0.00033215	641.8820917949633	105.59	0.20449	105.59	105.46	105.67	-0.0027847					40	28	2	0	0	0	0.33324	1	27961	27961		1.1933	0	1	87480			36824	625	21644	21645	44541	44541					0.12211243991396259
RAHTPIVLA	9	Unmodified	_RAHTPIVLA_					0	0	0		TMEM245|p.V396Sfs*43|1|0.14|ENSG00000106771|chr9:109087308-109087309|-/A|frameshift_variant;nc|ENSG00000106771|Q9H330-4|TMEM245;ENSG00000106771|ENST00000374586|TMEM245	TMEM245|p.V396Sfs*43|1|0.14|ENSG00000106771|chr9:109087308-109087309|-/A|frameshift_variant	TMEM245|p.V396Sfs*43|1|0.14|ENSG00000106771|chr9:109087308-109087309|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2574768066406	2	489.298176	976.581799	0.40543	0.00019838	-0.37716	-0.00018454	0.028271	1.3833E-05	489.29812328309356	21.731	0.72954	21.63	21.13	21.86	-0.10034					49	25	3	0	0	0	0.25988	1	2836	2836		3.9444	0	1	190500			36825	2099	21645	21646	44542	44542					0.0925717277965532
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2877807617188	2	541.287474	1080.5604	0.54737	0.00029628	0.22795	0.00012339	0.77532	0.00041967	541.2876963752019	62.385	0.69233	62.385	62.115	62.807	0					75	25	4	0	0	0	0.1335	1	15423	15423		47.594	11.088	1	1102600			36826	6613	21646	21647	44543	44543					0.023337429602634074
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2879028320312	2	541.287474	1080.5604	0.54674	0.00029594	0.33858	0.00018327	0.88532	0.00047921	541.2876839018232	62.336	0.64549	62.433	62.149	62.795	0.096985					65	23	4	0	0	0	0.099099	1	15382	15382		55.503	15.553	1	1239200			36827	6613	21646	21647	44544	44544					0.023337429602634074
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2877197265625	2	541.287474	1080.5604	0.61683	0.00033388	0.20221	0.00010946	0.81904	0.00044334	541.2875919420561	62.384	0.69004	62.375	62.142	62.832	-0.0085526					75	25	4	0	0	0	0.14646	1	15391	15391		43.772	13.136	1	1177500			36828	6613	21646	21647	44545	44545					0.023337429602634074
RAINIALQL	9	Unmodified	_RAINIALQL_					0	0	0		ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.31939697265625	2	506.319109	1010.62366	0.10642	5.3885E-05	0.22376	0.0001133	0.33019	0.00016718	506.3189248659259	59.696	0.87383	59.696	59.024	59.897	0					53	30	3	0	0	0	0.023967	1	14567	14567		62.573	3.8939	1	1477900			36829	6623	21647	21648	44546	44546					0.11877728468175519
RAINIALQL	9	Unmodified	_RAINIALQL_					0	0	0		ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.3196105957031	2	506.319109	1010.62366	0.10975	5.5568E-05	0.95664	0.00048437	1.0664	0.00053993	506.3193464437138	59.57	0.55293	59.665	59.355	59.907	0.095093					46	19	4	0	0	0	0.014888	1	14523	14523		71.922	7.686	1	1276800			36830	6623	21647	21648	44547	44547					0.11877728468175519
RAINIALQL	9	Unmodified	_RAINIALQL_					0	0	0		ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	ENSG00000172336|ENST00000303151|POP7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.319109	1010.62366	0.39678	0.0002009	0.48865	0.00024741	0.88543	0.00044831	506.3191636040204	59.664	0.50671	59.653	59.343	59.85	-0.011486	-0.018387	-2.0391E-05	NaN	71.922	40	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	761350			36831	6623	21647	21648							0.11877728468175519
RAIPATRRVVL	11	Unmodified	_RAIPATRRVVL_					0	0	0		ENSG00000187840|ENST00000338825|EIF4EBP1	ENSG00000187840|ENST00000338825|EIF4EBP1	ENSG00000187840|ENST00000338825|EIF4EBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.200439453125	3	417.938451	1250.79352	-0.19417	-8.1149E-05	-0.24788	-0.0001036	-0.44205	-0.00018475	417.9382500969979	27.381	0.41541	27.381	27.146	27.561	0					23	13	2	0	0	0	0.33346	1	4586	4586		0.50596	0	1	46666			36832	7716	21648	21649	44548	44548					0.17815844470578668
RAKDATEW	8	Unmodified	_RAKDATEW_					0	0	0		ENST00000444527.2_1_8:56367247-56367565:-|nuORF	ENST00000444527.2_1_8:56367247-56367565:-|nuORF	ENST00000444527.2_1_8:56367247-56367565:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.26336669921875	2	488.745973	975.477394	-0.08841	-4.321E-05	0.81513	0.00039839	0.72672	0.00035518	488.7465212916547	13.203	0.366	13.136	12.936	13.302	-0.067495					20	12	2	0	0	0	0.46022	1	340	340		2.3027	0	1	35511			36833	10576	21649	21650	44549	44549					-0.011325737677225334
RAKEVYSIL	9	Unmodified	_RAKEVYSIL_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2982788085938	2	539.816399	1077.61824	0.19088	0.00010304	0.30784	0.00016618	0.49872	0.00026922	539.8166841984041	61.624	0.63123	61.615	61.377	62.008	-0.0085526					56	22	4	0	0	0	0.016723	1	15185	15185		69.105	1.0242	1	2634700	+		36834	17857	21650	21651	44550	44550					0.0825400488570267
RAKNKPKV	8	Unmodified	_RAKNKPKV_					0	0	0			REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A	REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.22003173828125	2	470.806168	939.597784	-0.14102	-6.6392E-05	-0.086956	-4.0939E-05	-0.22797	-0.00010733	470.8061441084694	19.059	0.53577	19.059	18.814	19.35	0					27	18	2	0	0	0	0.34131	1	2101	2101		12.532	0	1	52312	+		36835	15964	21651	21652	44551	44551					0.12556879016551648
RAKNKPKV	8	Unmodified	_RAKNKPKV_					0	0	0			REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A	REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2200622558594	2	470.806168	939.597784	-0.00079416	-3.7389E-07	-0.48136	-0.00022663	-0.48215	-0.000227	470.8059874435921	19.177	0.70575	19.061	18.838	19.544	-0.11592					30	24	2	0	0	0	0.34131	1	2139	2139		4.3292	0	1	57487	+		36836	15964	21651	21652	44552	44552					0.12556879016551648
RAKRIVNH	8	Unmodified	_RAKRIVNH_					0	0	0		KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant;nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7511291503906	2	497.306867	992.599181	0.17828	8.866E-05	2.3891	0.0011881	2.5673	0.0012768	497.30811795132144	15.482	0.39798	15.373	15.151	15.549	-0.10981					18	13	2	0	0	0	0.344	1	1024	1024		2.5775	0.27475	1	27676			36837	4033	21652	21653	44553	44553					0.10258513105304701
RAKSKPSVPG	10	Unmodified	_RAKSKPSVPG_					0	0	0			REV__nc|ENSG00000116871|Q3KQU3-3|MAP7D1	REV__nc|ENSG00000116871|Q3KQU3-3|MAP7D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2929077148438	2	513.806365	1025.59818	0.11661	5.9916E-05	-0.7302	-0.00037518	-0.61359	-0.00031526	513.8055662466469	64.906	0.13754	64.894	64.809	64.947	-0.01133					6	4	2	0	0	0	0.3156	1	16145	16145		10.824	8.7642	1	126230	+		36838	20429	21653	21654	44554	44554					0.08640253945759468
RALATRVQ	8	Unmodified	_RALATRVQ_					0	0	0			REV__nc|ENSG00000204314|Q99946-2|PRRT1	REV__nc|ENSG00000204314|Q99946-2|PRRT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.73822021484375	2	457.780151	913.545748	-0.065206	-2.985E-05	0.69028	0.000316	0.62508	0.00028615	457.7802876561364	17.729	0.88482	17.611	17.18	18.065	-0.11739					51	30	3	0	0	0	0.34131	1	1602	1602		12.532	0	1	120400	+		36839	18933	21654	21655	44555	44555					0.08551715602800414
RALDIPLVK	9	Unmodified	_RALDIPLVK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.8292846679688	2	512.829309	1023.64407	0.25481	0.00013068	0.088489	4.538E-05	0.3433	0.00017606	512.829259954894	44.24	0.60081	44.315	44.122	44.723	0.075047					47	21	3	0	0	0	0.048871	1	9801	9801		53.317	21.011	1	577080			36840	6781	21655	21656	44556	44556					0.13318899127989425
RALDIPLVK	9	Unmodified	_RALDIPLVK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	512.829309	1023.64407	0.42472	0.00021781	0.059156	3.0337E-05	0.48388	0.00024815	512.8292783470075	44.396	0.64542	44.396	44.065	44.71	0	0.031436	1.9496E-05	NaN	53.317	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	785830			36841	6781	21655	21656							0.13318899127989425
RALDIPLVK	9	Unmodified	_RALDIPLVK_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	512.829309	1023.64407	0.40758	0.00020902	-0.070857	-3.6337E-05	0.33673	0.00017268	512.8291775189283	44.315	0.7264	44.384	44.065	44.791	0.068569	0.018682	-0.00011385	NaN	53.317	55	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	624400			36842	6781	21655	21656							0.13318899127989425
RALLLRDLE	9	Unmodified	_RALLLRDLE_					0	0	0			REV__ENST00000440294.6_1_3:38080716-38136583:+|nuORF	REV__ENST00000440294.6_1_3:38080716-38136583:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2946166992188	2	549.835123	1097.65569	0.16966	9.3288E-05	-0.4832	-0.00026568	-0.31354	-0.00017239	549.8347619780703	15.642	0.34455	15.642	15.498	15.842	0					16	11	2	0	0	0	0.26188	1	1054	1054		1.6526	0	1	26645	+		36843	13397	21656	21657	44557	44557					0.1107709615132535
RALLLRDLE	9	Unmodified	_RALLLRDLE_					0	0	0			REV__ENST00000440294.6_1_3:38080716-38136583:+|nuORF	REV__ENST00000440294.6_1_3:38080716-38136583:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	549.835123	1097.65569	0.25972	0.0001428	-0.27291	-0.00015005	-0.013183	-7.2486E-06	549.8348844661025	15.783	0.29873	15.673	15.517	15.816	-0.10981	0.017299	8.1443E-06	NaN	1.6526	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26522	+		36844	13397	21656	21657							0.1107709615132535
RALLSIRN	8	Unmodified	_RALLSIRN_					0	0	0			REV__ENSG00000221923|ENST00000422689|ZNF880	REV__ENSG00000221923|ENST00000422689|ZNF880	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2663879394531	2	471.795801	941.577048	-0.12172	-5.7427E-05	0.11664	5.5031E-05	-0.0050773	-2.3954E-06	471.7959070426414	14.1	0.23264	14.034	13.949	14.181	-0.066068					10	7	2	0	0	0	0.34294	1	624	624		7.2892	0	1	45790	+		36845	19098	21657	21658	44558	44558					0.10392288636899139
RALQASALK	9	Unmodified	_RALQASALK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7637939453125	2	479.295633	956.576714	0.10959	5.2524E-05	0.061026	2.9249E-05	0.17061	8.1774E-05	479.29575202829375	19.251	0.62486	19.135	18.919	19.544	-0.11592					43	21	3	0	0	0	0.18936	1	2179	2179		26.268	1.2772	1	194220			36846	4896	21658	21659	44559	44559					0.0966886891702643
RALQASALK	9	Unmodified	_RALQASALK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7637634277344	2	479.295633	956.576714	0.12227	5.8606E-05	0.13995	6.708E-05	0.26223	0.00012569	479.29572410024747	19.203	0.55361	19.148	18.931	19.485	-0.055691					30	18	2	0	0	0	0.23749	1	2166	2166		20.415	3.3016	1	195590			36847	4896	21658	21659	44560	44560					0.0966886891702643
RALTPPVL	8	Unmodified	_RALTPPVL_					0	0	0			REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF	REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.7763977050781	2	433.776545	865.538538	0.076682	3.3263E-05	-0.056426	-2.4476E-05	0.020255	8.7863E-06	433.7763922782342	43.496	0.89383	43.574	43.234	44.128	0.077515					45	32	2	0	0	0	0.10069	1	9564	9564		60.39	12.044	1	1549800	+		36848	20059	21659	21660	44561	44561					0.10038983002368695
RALTPPVL	8	Unmodified	_RALTPPVL_					0	0	0			REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF	REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	433.776545	865.538538	0.076682	3.3263E-05	-0.056426	-2.4476E-05	0.020255	8.7863E-06	433.7763922782342	43.496	0.89383	43.574	43.234	44.128	0.077515	0.0005199	5.4349E-05	NaN	60.39	45	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1549800	+		36849	20059	21659	21660							0.10038983002368695
RALTPPVL	8	Unmodified	_RALTPPVL_					0	0	0			REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF	REV__ENST00000334295.8_1_18:34376463-34376655:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	433.776545	865.538538	0.015032	6.5206E-06	-0.13613	-5.9051E-05	-0.1211	-5.253E-05	433.77640922275197	43.471	0.72653	43.555	43.268	43.995	0.083996	-0.017991	-1.48E-05	NaN	60.39	41	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1642400	+		36850	20059	21659	21660							0.10038983002368695
RALWRSAQ	8	Unmodified	_RALWRSAQ_					0	0	0			REV__ENST00000495986.1_1_X:53459241-53459289:-|nuORF	REV__ENST00000495986.1_1_X:53459241-53459289:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.8033142089844	2	494.277775	986.540997	0.16096	7.9557E-05	-0.27458	-0.00013572	-0.11362	-5.6161E-05	494.27684038406085	27.666	0.51939	27.666	27.294	27.814	0					25	17	2	0	0	0	0.34419	1	4625	4625		1.8442	0	1	75701	+		36851	21666	21660	21661	44562	44562					0.04718831460036199
RALWRSAQ	8	Unmodified	_RALWRSAQ_					0	0	0			REV__ENST00000495986.1_1_X:53459241-53459289:-|nuORF	REV__ENST00000495986.1_1_X:53459241-53459289:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	494.277775	986.540997	0.10064	4.9745E-05	-0.4298	-0.00021244	-0.32916	-0.00016269	494.27700346071845	27.613	0.42356	27.591	27.382	27.805	-0.02141	-0.014708	-5.7453E-05	NaN	1.8442	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91613	+		36852	21666	21660	21661							0.04718831460036199
RALWRSAQ	8	Unmodified	_RALWRSAQ_					0	0	0			REV__ENST00000495986.1_1_X:53459241-53459289:-|nuORF	REV__ENST00000495986.1_1_X:53459241-53459289:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	494.277775	986.540997	0.036438	1.8011E-05	-0.41109	-0.00020319	-0.37465	-0.00018518	494.2770154044	27.572	0.54859	27.561	27.344	27.893	-0.01156	-0.04529	-3.8959E-05	NaN	1.8442	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112600	+		36853	21666	21660	21661							0.04718831460036199
RAMVARLGL	9	Oxidation (M)	_RAM(Oxidation (M))VARLGL_		RAM(1)VARLGL		RAM(61)VARLGL	0	0	1		ENSG00000272398|ENST00000606017|CD24	ENSG00000272398|ENST00000606017|CD24	ENSG00000272398|ENST00000606017|CD24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7977600097656	2	501.797486	1001.58042	0.2812	0.00014111	0.52897	0.00026543	0.81017	0.00040654	501.79761999295533	31.706	1.2388	31.706	31.394	32.633	0					72	44	3	0	0	0	0.027237	1	5960	5960		61.357	36.684	1	3063200			36854	8701	21661	21662	44563	44563		921			0.07969215419245756
RAMVARLGL	9	Oxidation (M)	_RAM(Oxidation (M))VARLGL_		RAM(1)VARLGL		RAM(59)VARLGL	0	0	1		ENSG00000272398|ENST00000606017|CD24	ENSG00000272398|ENST00000606017|CD24	ENSG00000272398|ENST00000606017|CD24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7977600097656	2	501.797486	1001.58042	0.31434	0.00015774	0.34496	0.0001731	0.6593	0.00033084	501.79760609608354	31.67	1.2628	31.712	31.399	32.662	0.042366					74	44	2	0	0	0	0.034444	2	5952	5905;5952		58.679	36.932	1	3434300			36855	8701	21661	21662	44564;44565	44565		921			0.07969215419245756
RAMVARLGL	9	Oxidation (M)	_RAM(Oxidation (M))VARLGL_		RAM(1)VARLGL		RAM(68)VARLGL	0	0	1		ENSG00000272398|ENST00000606017|CD24	ENSG00000272398|ENST00000606017|CD24	ENSG00000272398|ENST00000606017|CD24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7978210449219	2	501.797486	1001.58042	0.34046	0.00017084	0.52581	0.00026385	0.86628	0.00043469	501.79761009972015	31.663	1.3089	31.704	31.281	32.59	0.040989					85	46	3	0	0	0	0.017391	1	5909	5909		68.081	43.407	1	3436100			36856	8701	21661	21662	44566	44566		921			0.07969215419245756
RANVINEI	8	Unmodified	_RANVINEI_					0	0	0		nc|ENSG00000131089|O43307-3|ARHGEF9;nc|ENSG00000131089|O43307-2|ARHGEF9;nc|ENSG00000131089|O43307|ARHGEF9;ENSG00000131089|ENST00000671741|ARHGEF9	nc|ENSG00000131089|O43307-3|ARHGEF9	nc|ENSG00000131089|O43307-3|ARHGEF9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.27215576171875	2	464.764166	927.513779	-0.30652	-0.00014246	-0.0060301	-2.8026E-06	-0.31255	-0.00014526	464.7641805982835	14.334	0.49142	14.23	14.049	14.54	-0.10466					27	16	2	0	0	0	0.34039	1	689	689		15.847	0	1	116260			36857	3543	21662	21663	44567	44567					0.047123031289856954
RAPDGDAAL	9	Unmodified	_RAPDGDAAL_					0	0	0			REV__ENSG00000146109|ENST00000274849|ABT1	REV__ENSG00000146109|ENST00000274849|ABT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7510681152344	2	443.224874	884.435195	0.018088	8.017E-06	-0.013091	-5.8021E-06	0.0049972	2.2149E-06	443.2247740752891	19.021	0.75599	19.021	18.646	19.401	0					35	26	2	0	0	0	0.25879	1	2222	2222		4.756	1.8668	1	48688	+		36858	16329	21663	21664	44568	44568					-0.01164549176098717
RAPDGDAAL	9	Unmodified	_RAPDGDAAL_					0	0	0			REV__ENSG00000146109|ENST00000274849|ABT1	REV__ENSG00000146109|ENST00000274849|ABT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	443.224874	884.435195	-0.00036534	-1.6193E-07	2.4664	0.0010932	2.4661	0.001093	443.22471535450717	19.242	0.54846	19.126	18.762	19.311	-0.11592	0.063527	0.0019885	NaN	4.756	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45033	+		36859	16329	21663	21664							-0.01164549176098717
RAPEDEFVQI	10	Unmodified	_RAPEDEFVQI_					0	0	0			REV__nc|ENSG00000196083|Q9NPH3-3|IL1RAP	REV__nc|ENSG00000196083|Q9NPH3-3|IL1RAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3037109375	2	602.303852	1202.59315	0.35924	0.00021637	-0.33648	-0.00020266	0.022763	1.371E-05	602.3034185071283	23.428	0.6451	23.383	23.06	23.705	-0.044865					51	22	3	0	0	0	0.39227	1	3420	3420		4.897	4.897	1	216590	+		36860	18612	21664	21665	44569	44569					-4.0947075376607245E-05
RAPEVILNW	9	Unmodified	_RAPEVILNW_					0	0	0		ENST00000488504.5_1_22:50691832-50695243:-|nuORF;ENST00000482969.5_1_22:50693515-50695072:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF;ENST00000496942.5_1_22:50694331-50695243:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7657470703125	2	549.308741	1096.60293	0.17487	9.6057E-05	-0.059828	-3.2864E-05	0.11504	6.3193E-05	549.3086253354245	28.441	0.3379	28.442	28.242	28.58	0.0004673					20	11	2	0	0	0	0.25526	1	4968	4968		7.9102	0	1	152540			36861	7731	21665	21666	44570	44570					0.05849138088501604
RAPGWQRGK	9	Unmodified	_RAPGWQRGK_					0	0	0			REV__ENST00000521478.1_1_7:27187126-27190080:-|nuORF	REV__ENST00000521478.1_1_7:27187126-27190080:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2963256835938	2	528.296499	1054.57845	0.14967	7.9068E-05	-0.0062362	-3.2946E-06	0.14343	7.5774E-05	528.2964342843633	14.175	0.54653	14.109	13.774	14.32	-0.066068					24	18	2	0	0	0	0.33018	1	659	659		4.3292	0.73274	1	98619	+		36862	21903	21666	21667	44571	44571					0.0533392272564015
RAPGWQRGK	9	Unmodified	_RAPGWQRGK_					0	0	0			REV__ENST00000521478.1_1_7:27187126-27190080:-|nuORF	REV__ENST00000521478.1_1_7:27187126-27190080:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.296499	1054.57845	0.14967	7.9068E-05	-0.0062362	-3.2946E-06	0.14343	7.5774E-05	528.2964342843633	14.175	0.54653	14.109	13.774	14.32	-0.066068	0.015063	-0.00020453	NaN	4.3292	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98619	+		36863	21903	21666	21667							0.0533392272564015
RAPLTLLLL	9	Unmodified	_RAPLTLLLL_					0	0	0			REV__ENSG00000134245|ENST00000369684|WNT2B	REV__ENSG00000134245|ENST00000369684|WNT2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.3421936035156	2	505.342052	1008.66955	0.42593	0.00021524	2.5426	0.0012849	2.9685	0.0015001	505.34372007579987	74.326	1.1102	74.295	74	75.11	-0.030655					96	39	4	0	0	0	0.14786	1	19024	19024		31.268	1.4278	1	3356000	+		36864	15661	21667	21668	44572	44572					0.16556373650416845
RAPPLLQPRG	10	Unmodified	_RAPPLLQPRG_					0	0	0			REV__nc|ENSG00000247315|Q9NUD5-2|ZCCHC3	REV__nc|ENSG00000247315|Q9NUD5-2|ZCCHC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.8348388671875	2	552.835457	1103.65636	0.45095	0.0002493	-0.72924	-0.00040315	-0.27829	-0.00015385	552.8349917323637	30.257	0.22245	30.285	30.131	30.354	0.027946					9	7	2	0	0	0	0.40106	1	5531	5531		3.2813	0	1	74793	+		36865	19208	21668	21669	44573	44573					0.10867935590999878
RAPQQVPHP	9	Unmodified	_RAPQQVPHP_					0	0	0		ENST00000533614.5_1_1:249151936-249153183:-|nuORF;ENST00000496411.5_1_1:249152123-249153213:-|nuORF;ENST00000483791.6_1_1:249152025-249153300:-|nuORF;ENST00000470787.6_1_1:249150751-249153213:-|nuORF;ENST00000412341.6_1_1:249150017-249153213:-|nuORF	ENST00000533614.5_1_1:249151936-249153183:-|nuORF	ENST00000533614.5_1_1:249151936-249153183:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7811889648438	2	515.283057	1028.55156	-0.11772	-6.0658E-05	-0.28654	-0.00014765	-0.40426	-0.00020831	515.2828963663486	14.023	0.33817	13.918	13.685	14.023	-0.10466					15	11	2	0	0	0	0.25938	1	608	608		4.3292	0	1	75655			36866	10276	21669	21670	44574	44574					0.038428141144549954
RAPQVGSI	8	Unmodified	_RAPQVGSI_					0	0	0			REV__ENSG00000154310|ENST00000436636|TNIK	REV__ENSG00000154310|ENST00000436636|TNIK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.5502014160156	2	414.240327	826.466101	-0.13193	-5.4649E-05	0.069193	2.8662E-05	-0.062734	-2.5987E-05	414.24024494403994	22.155	0.85606	22.155	21.819	22.675	0					71	30	3	0	0	0	0.3366	1	3119	3119		18.135	0	1	403850	+		36867	16660	21670	21671	44575	44575					0.045926489288035555
RAPQVGSI	8	Unmodified	_RAPQVGSI_					0	0	0			REV__ENSG00000154310|ENST00000436636|TNIK	REV__ENSG00000154310|ENST00000436636|TNIK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	414.240327	826.466101	0.22512	9.3254E-05	-0.4573	-0.00018943	-0.23218	-9.6178E-05	414.24011692347756	22.241	0.91866	22.14	21.804	22.723	-0.10034	-0.0058206	-0.00025367	NaN	18.135	93	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	486750	+		36868	16660	21670	21671							0.045926489288035555
RAPQVRIPYVE	11	Unmodified	_RAPQVRIPYVE_					0	0	0			REV__nc|ENSG00000067177|P46020-3|PHKA1	REV__nc|ENSG00000067177|P46020-3|PHKA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.7156066894531	3	443.254216	1326.74082	0.15952	7.0709E-05	0.17635	7.8166E-05	0.33587	0.00014888	443.25399629541846	30.809	1.7544	30.809	30.113	31.867	0					131	62	4	0	0	0	0.33236	1	5916	5916		1.1098	0.65524	1	319690	+		36869	13686	21671	21672	44576	44576					0.09051841617110767
RAPRLSRPE	9	Unmodified	_RAPRLSRPE_					0	0	0			REV__AluJo_dup16193|chr3:194292835-194293135:-|1.4198766562774638|0.0870308685012125|4.03|512.0|2|1|sense	REV__AluJo_dup16193|chr3:194292835-194293135:-|1.4198766562774638|0.0870308685012125|4.03|512.0|2|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2698974609375	2	541.314889	1080.61522	0.11951	6.4691E-05	2.2141	0.0011985	2.3336	0.0012632	541.3144082506032	12.277	0.20305	12.277	12.194	12.397	0					12	6	3	0	0	0	0.26188	1	60	60		1.6526	0	1	21906	+		36870	13099	21672	21673	44577	44577					0.0781417455157225
RAPRLSRPEL	10	Unmodified	_RAPRLSRPEL_					0	0	0			REV__AluJo_dup16193|chr3:194292835-194293135:-|1.4198766562774638|0.0870308685012125|4.03|512.0|2|1|sense	REV__AluJo_dup16193|chr3:194292835-194293135:-|1.4198766562774638|0.0870308685012125|4.03|512.0|2|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8553466796875	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.575	1	93.574	93.074	94.074	-0.00051117								0	0	0	0.37925	1	24924	24924		2.4985	0.65425	1		+		36871	13099	21673	21674	44578	44578					0.11018705648461946
RAPRRARARE	10	Unmodified	_RAPRRARARE_					0	0	0			REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8688354492188	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.6	1	101.6	101.1	102.1	0								0	0	0	0.37807	1	27086	27086		2.9952	1.3426	1		+		36872	19761	21674	21675	44579	44579					0.11346564205609866
RAPRRARARE	10	Unmodified	_RAPRRARARE_					0	0	0			REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8685913085938	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.52	1	102.52	102.02	103.02	0								0	0	0	0.37355	1	27275	27275		4.897	2.3985	1		+		36873	19761	21674	21675	44580	44580					0.11346564205609866
RAPRRARARE	10	Unmodified	_RAPRRARARE_					0	0	0			REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8692626953125	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.918	1	95.001	94.501	95.501	0.082779								0	0	0	0.37807	1	25334	25334		2.9952	0.49676	1		+		36874	19761	21674	21675	44581	44581					0.11346564205609866
RAPRRARARE	10	Unmodified	_RAPRRARARE_					0	0	0			REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8694458007812	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.95	1	100.98	100.48	101.48	0.027206								0	0	0	0.37807	1	26944	26944		2.9952	0.49676	1		+		36875	19761	21674	21675	44582	44582					0.11346564205609866
RAPRRARARE	10	Unmodified	_RAPRRARARE_					0	0	0			REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8692016601562	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.09	1	101.11	100.61	101.61	0.027206								0	0	0	0.3726	1	26971	26971		5.2969	1.1074	1		+		36876	19761	21674	21675	44583	44583					0.11346564205609866
RAPRRARARE	10	Unmodified	_RAPRRARARE_					0	0	0			REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8875732421875	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.72	1	102.74	102.24	103.24	0.016685								0	0	0	0.37355	1	27318	27318		4.897	1.3005	1		+		36877	19761	21674	21675	44584	44584					0.11346564205609866
RAPRRARARE	10	Unmodified	_RAPRRARARE_					0	0	0			REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8698120117188	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.31	1	101.31	100.81	101.81	-0.0054703								0	0	0	0.37157	1	27048	27048		5.7319	2.1354	1		+		36878	19761	21674	21675	44585	44585					0.11346564205609866
RAPRRARARE	10	Unmodified	_RAPRRARARE_					0	0	0			REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	REV__ENST00000292363.9_1_19:651790-663233:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8697509765625	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.35	1	101.34	100.84	101.84	-0.0054703								0	0	0	0.37355	1	27057	27057		4.897	1.3005	1		+		36879	19761	21674	21675	44586	44586					0.11346564205609866
RAQDEALTK	9	Unmodified	_RAQDEALTK_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2777709960938	2	516.277638	1030.54072	0.019676	1.0158E-05	0.038733	1.9997E-05	0.058409	3.0155E-05	516.2776735106338	13.733	0.60445	13.733	13.509	14.113	0					45	20	4	0	0	0	0.038672	1	513	513		57.108	34.371	1	384470			36880	3395	21675	21676	44587	44587					0.026673669494812202
RAQDEALTK	9	Unmodified	_RAQDEALTK_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2777099609375	2	516.277638	1030.54072	-0.10764	-5.557E-05	0.19078	9.8497E-05	0.083147	4.2927E-05	516.2777892900571	13.829	0.45311	13.725	13.538	13.991	-0.10466					44	15	4	0	0	0	0.027957	1	538	538		61.09	33.461	1	385830			36881	3395	21675	21676	44588	44588					0.026673669494812202
RAQDEALTK	9	Unmodified	_RAQDEALTK_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2777709960938	2	516.277638	1030.54072	-0.12883	-6.6511E-05	0.32297	0.00016674	0.19414	0.00010023	516.2778706139668	13.829	0.46142	13.762	13.575	14.037	-0.066068					44	15	4	0	0	0	0.019446	1	542	542		64.927	35.845	1	480430			36882	3395	21675	21676	44589	44589					0.026673669494812202
RAQDLPLKK	9	Unmodified	_RAQDLPLKK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.829833984375	2	534.82984	1067.64513	0.39239	0.00020986	-0.29613	-0.00015838	0.096256	5.1481E-05	534.8296068060469	16.61	1.6068	16.61	15.734	17.341	0					103	56	3	0	0	0	0.2422	1	1364	1364		19.362	4.5237	1	523730			36883	4253	21676	21677	44590	44590					0.11401113496890503
RAQDLPLKK	9	Unmodified	_RAQDLPLKK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.8300170898438	2	534.82984	1067.64513	0.12371	6.6164E-05	0.1449	7.7499E-05	0.26861	0.00014366	534.829812974508	16.726	1.6977	16.612	15.692	17.389	-0.11434					119	59	4	0	0	0	0.22935	1	1392	1392		19.362	4.5237	1	479000			36884	4253	21676	21677	44591	44591					0.11401113496890503
RAQDLPLKK	9	Unmodified	_RAQDLPLKK_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	534.82984	1067.64513	0.45335	0.00024246	-0.15144	-8.0992E-05	0.30191	0.00016147	534.8296923039022	16.696	1.206	16.634	15.943	17.149	-0.062534	0.015406	-5.1432E-05	NaN	19.362	93	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469950			36885	4253	21676	21677							0.11401113496890503
RAQPATAL	8	Unmodified	_RAQPATAL_					0	0	0		ENST00000414789.5_1_19:38709694-38713528:-|nuORF;ENST00000586624.1_2_19:38709694-38718681:-|nuORF;ENST00000420980.6_1_19:38709694-38714867:-|nuORF;ENST00000438060.5_2_19:38709694-38714578:-|nuORF	ENST00000414789.5_1_19:38709694-38713528:-|nuORF	ENST00000414789.5_1_19:38709694-38713528:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.55023193359375	2	414.240327	826.466101	0.05256	2.1772E-05	-0.06651	-2.7551E-05	-0.01395	-5.7787E-06	414.2402170825438	22.193	0.93031	22.143	21.855	22.785	-0.049377					81	32	3	0	0	0	0.34167	1	3136	3136		11.64	1.5664	1	451810			36886	10302	21677	21678	44592	44592					0.04592648928780818
RARDIQEAL	9	Unmodified	_RARDIQEAL_					0	0	0		nc|ENSG00000172765|O94876-2|TMCC1;ENSG00000172765|ENST00000393238|TMCC1	nc|ENSG00000172765|O94876-2|TMCC1	nc|ENSG00000172765|O94876-2|TMCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2989501953125	2	536.298904	1070.58326	0.41661	0.00022343	-0.30254	-0.00016225	0.11407	6.1177E-05	536.2987258178766	27.018	0.68197	27.018	26.759	27.441	0					61	23	4	0	0	0	0.01909	1	4524	4524		65.474	19.774	1	583320			36887	6661	21678	21679	44593	44593					0.050787620777555276
RARDIQEAL	9	Unmodified	_RARDIQEAL_					0	0	0		nc|ENSG00000172765|O94876-2|TMCC1;ENSG00000172765|ENST00000393238|TMCC1	nc|ENSG00000172765|O94876-2|TMCC1	nc|ENSG00000172765|O94876-2|TMCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2988891601562	2	536.298904	1070.58326	0.46977	0.00025194	-0.37945	-0.0002035	0.090321	4.8439E-05	536.2986884947793	27.067	0.60999	27.055	26.797	27.407	-0.01156					53	21	3	0	0	0	0.032589	1	4553	4553		59.368	13.669	1	658610			36888	6661	21678	21679	44594	44594					0.050787620777555276
RARPLLQR	8	Unmodified	_RARPLLQR_					0	0	0			REV__ENSG00000025708|ENST00000252029|TYMP	REV__ENSG00000025708|ENST00000252029|TYMP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.33502197265625	2	505.322517	1008.63048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.507	1	24.507	24.007	25.007	0								0	0	0	0.36336	1	3771	3771		8.5933	0	1		+		36889	13481	21679	21680	44595	44595					0.12651086139419476
RARQGRVGSL	10	Unmodified	_RARQGRVGSL_					0	0	0			REV__ENST00000291560.6_1_21:45077957-45078116:-|nuORF	REV__ENST00000291560.6_1_21:45077957-45078116:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7770385742188	2	550.325788	1098.63702	0.72939	0.0004014	0.86499	0.00047603	1.5944	0.00087743	550.3262855710021	45.385	0.39461	45.444	45.253	45.647	0.059837					24	13	2	0	0	0	0.31267	1	10154	10154		10.074	0.6908	1	166320	+		36890	19757	21680	21681	44596	44596					0.09164979300157938
RARQGRVGSL	10	Unmodified	_RARQGRVGSL_					0	0	0			REV__ENST00000291560.6_1_21:45077957-45078116:-|nuORF	REV__ENST00000291560.6_1_21:45077957-45078116:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.77685546875	2	550.325788	1098.63702	0.53724	0.00029566	1.1436	0.00062936	1.6809	0.00092502	550.3262768696771	45.42	0.37267	45.485	45.302	45.675	0.065048					19	13	2	0	0	0	0.31267	1	10132	10132		14.838	5.4551	1	140330	+		36891	19757	21680	21681	44597	44597					0.09164979300157938
RARQYPWGTV	10	Unmodified	_RARQYPWGTV_					0	0	0		nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6	nc|ENSG00000125354|Q14141-3|SEPTIN6	nc|ENSG00000125354|Q14141-3|SEPTIN6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2350158691406	3	411.887756	1232.64144	-0.29263	-0.00012053	-1.4437	-0.00059463	-1.7363	-0.00071516	411.88721255564894	38.573	0.49669	38.573	38.269	38.765	0					39	17	3	0	0	0	0.3179	1	7971	7971		8.9762	2.7844	1	177260			36892	3198	21681	21682	44598	44598					0.034424437230200056
RARRARPGWI	10	Unmodified	_RARRARPGWI_					0	0	0		ENST00000591419.2_2_19:10613109-10613358:-|nuORF	ENST00000591419.2_2_19:10613109-10613358:-|nuORF	ENST00000591419.2_2_19:10613109-10613358:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8685302734375	2	619.870697	1237.72684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.23	1	113.21	112.71	113.71	-0.017303								0	0	0	0.3808	1	29434	29434		1.8442	0.36234	1				36893	12182	21682	21683	44599	44599					0.11748653699351053
RARRPPRRSS	10	Unmodified	_RARRPPRRSS_					0	0	0		ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENST00000525036.1_1_13:48877982-48934322:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3727416992188	2	619.868686	1237.72282	0.24326	0.00015079	2.0983	0.0013006	2.3415	0.0014514	620.3723622558309	96.341	0.93677	96.338	95.853	96.789	-0.0038147					121	90	2	0	0	0	0.38773	1	25755	25755		5.7319	0.83484	1	258000			36894	11531	21683	21684	44600	44600					0.11346564205632603
RARSLYKNFHF	11	Unmodified	_RARSLYKNFHF_					0	0	0			REV__ENSG00000120094|ENST00000239174|HOXB1	REV__ENSG00000120094|ENST00000239174|HOXB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2626037597656	3	480.261594	1437.76295	0.163	7.8282E-05	1.1256	0.00054057	1.2886	0.00061885	480.26226475095	24.814	1.4491	24.758	24.283	25.732	-0.055931					173	50	5	0	0	0	0.432	3	3843	3843;3852;3898		7.0341	1.5108	1	2644400	+		36895	15076	21684	21685	44601;44602;44603	44601					0.061580660855497626
RARSQLSL	8	Unmodified	_RARSQLSL_					0	0	0			REV__ENSG00000061794|ENST00000081029|MRPS35	REV__ENSG00000061794|ENST00000081029|MRPS35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7772216796875	2	465.777608	929.540663	0.069502	3.2372E-05	-1.2182	-0.00056741	-1.1487	-0.00053504	465.7775319258724	71.513	3.7412	71.57	70.875	74.617	0.056572					306	134	4	0	0	0	0.42077	1	17989	17989		15.847	0	1	2579700	+		36896	13627	21685	21686	44604	44604					0.07307411740191583
RASLLPHVPHL	11	Unmodified	_RASLLPHVPHL_					0	0	0		ENST00000582276.1_1_17:37830882-37844267:-|nuORF	ENST00000582276.1_1_17:37830882-37844267:-|nuORF	ENST00000582276.1_1_17:37830882-37844267:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3282470703125	2	620.369664	1238.72478	-0.11017	-6.8345E-05	2.3911	0.0014834	2.281	0.001415	620.370985401454	101.51	0.079086	101.54	101.48	101.56	0.027206					10	9	2	0	0	0	0.33311	1	27076	27076		1.4819	0	1	58482			36897	12088	21686	21687	44605	44605					0.11496180170888692
RASLLPHVPHL	11	Unmodified	_RASLLPHVPHL_					0	0	0		ENST00000582276.1_1_17:37830882-37844267:-|nuORF	ENST00000582276.1_1_17:37830882-37844267:-|nuORF	ENST00000582276.1_1_17:37830882-37844267:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	620.369664	1238.72478	-0.13441	-8.3384E-05	2.1879	0.0013573	2.0535	0.0012739	620.371099561786	101.72	0.046593	101.72	101.69	101.74	0	0.091968	-0.00018268	NaN	1.4819	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30037			36898	12088	21686	21687							0.11496180170888692
RATHRLLLL	9	Unmodified	_RATHRLLLL_					0	0	0		nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;GNAS|p.E209*|1|0.26|ENSG00000087460|chr20:58909385-58909386|-/T|frameshift_variant	nc|ENSG00000087460|P63092-3|GNAS	nc|ENSG00000087460|P63092-3|GNAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.854248046875	2	546.85365	1091.69275	0.57067	0.00031207	0.051105	2.7947E-05	0.62177	0.00034002	546.8535644621807	36.574	0.89523	36.574	36.256	37.152	0					85	31	4	0	0	0	0.048637	2	7474	7427;7474		53.404	36.291	1	1297900			36899	1308	21687	21688	44606;44607	44607					0.15056812487750904
RATHRLLLL	9	Unmodified	_RATHRLLLL_					0	0	0		nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;GNAS|p.E209*|1|0.26|ENSG00000087460|chr20:58909385-58909386|-/T|frameshift_variant	nc|ENSG00000087460|P63092-3|GNAS	nc|ENSG00000087460|P63092-3|GNAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8544921875	2	546.85365	1091.69275	0.6882	0.00037635	0.16567	9.0596E-05	0.85387	0.00046694	546.8536772096153	36.471	0.95787	36.553	36.284	37.242	0.082355					78	34	3	0	0	0	0.058995	3	7444	7396;7444;7502		49.554	30.297	1	1417900			36900	1308	21687	21688	44608;44609;44610	44609					0.15056812487750904
RATHRLLLL	9	Unmodified	_RATHRLLLL_					0	0	0		nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;GNAS|p.E209*|1|0.26|ENSG00000087460|chr20:58909385-58909386|-/T|frameshift_variant	nc|ENSG00000087460|P63092-3|GNAS	nc|ENSG00000087460|P63092-3|GNAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8533325195312	2	546.85365	1091.69275	0.98119	0.00053657	-0.1199	-6.5567E-05	0.86129	0.000471	546.8535259449257	36.55	0.8355	36.642	36.278	37.114	0.09248					76	29	3	0	0	0	0.069366	3	7389	7389;7436;7485		45.7	27.553	1	1243900			36901	1308	21687	21688	44611;44612;44613	44611					0.15056812487750904
RATKPTVQK	9	Unmodified	_RATKPTVQK_					0	0	0		ENST00000263196.11_1_22:19055732-19076988:-|nuORF	ENST00000263196.11_1_22:19055732-19076988:-|nuORF	ENST00000263196.11_1_22:19055732-19076988:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.8148803710938	2	514.81419	1027.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.279	1	12.211	11.711	12.711	-0.06806								0	0	0	2.1394E-06	1	79	79		121.5	67.671	1				36902	8998	21688	21689	44614	44614					0.10112540462819197
RATRRLFSGL	10	Unmodified	_RATRRLFSGL_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8514404296875	2	588.851638	1175.68872	0.35164	0.00020706	-0.50854	-0.00029945	-0.15689	-9.2387E-05	588.8510498348444	91.77	0.56885	91.77	91.527	92.096	0					54	37	2	0	0	0	0.39227	1	24400	24400		4.897	1.3005	1	133540	+		36903	17970	21689	21690	44615	44615					0.10790722994056523
RATSFLLAL	9	Unmodified	_RATSFLLAL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.30047607421875	2	496.300384	990.586216	0.17952	8.9094E-05	0.2772	0.00013757	0.45672	0.00022667	496.3003939970368	66.906	0.64143	66.892	66.572	67.213	-0.013588					61	22	4	0	0	0	0.069366	1	16744	16744		45.7	9.5726	1	1330700			36904	5753	21690	21691	44616	44616					0.0905463720255284
RAVCARYT	8	Unmodified	_RAVCARYT_					0	0	0			REV__ENSG00000164062|ENST00000296456|APEH	REV__ENSG00000164062|ENST00000296456|APEH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.3083190917969	2	470.245086	938.47562	-0.076134	-3.5802E-05	-0.58328	-0.00027429	-0.65942	-0.00031009	470.24490279746146	15.919	0.50245	15.805	15.544	16.047	-0.11434					25	16	2	0	0	0	0.34408	1	1122	1122		2.3027	2.3027	1	49998	+		36905	17121	21691	21692	44617	44617					0.003920939426620862
RAVCARYT	8	Unmodified	_RAVCARYT_					0	0	0			REV__ENSG00000164062|ENST00000296456|APEH	REV__ENSG00000164062|ENST00000296456|APEH	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	470.245086	938.47562	0.030642	1.4409E-05	-1.1423	-0.00053714	-1.1116	-0.00052273	470.2445291102753	15.841	0.43127	15.777	15.574	16.005	-0.063696	-0.013878	-0.00022538	NaN	2.3027	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40183	+		36906	17121	21691	21692							0.003920939426620862
RAVELDVRRSS	11	Unmodified	_RAVELDVRRSS_					0	0	0			REV__ENSG00000197599|ENST00000389176|CCDC154	REV__ENSG00000197599|ENST00000389176|CCDC154	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	644.3612670898438	2	644.360025	1286.7055	0.60967	0.00039285	0.43004	0.0002771	1.0397	0.00066995	644.3602594440655	85.699	1.5366	85.69	85.04	86.577	-0.0090103					127	58	3	0	0	0	0.45367	1	22448	22448		4.1895	1.1943	1	276470	+		36907	18750	21692	21693	44618	44618					0.07361179089321013
RAVFRDLAA	9	Unmodified	_RAVFRDLAA_					0	0	0			REV__ENSG00000111331|ENST00000228928|OAS3	REV__ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7932434082031	2	509.793258	1017.57196	0.14489	7.3863E-05	0.36414	0.00018563	0.50902	0.0002595	509.79340958125914	28.578	0.65043	28.574	28.333	28.984	-0.0042572					47	22	3	0	0	0	0.20626	1	4986	4986		22.736	0	1	494010	+		36908	14717	21693	21694	44619	44619					0.06387984774266897
RAVRYAHE	8	Unmodified	_RAVRYAHE_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3038330078125	2	501.267407	1000.52026	0.20707	0.0001038	-0.92141	-0.00046187	-0.71435	-0.00035808	501.2669916196088	19.561	0.66236	19.561	19.243	19.905	0					33	22	2	0	0	0	0.34367	1	2264	2264		4.3292	0.73274	1	47673			36909	1389	21694	21695	44620	44620					0.020022410803676394
RAWETHHI	8	Unmodified	_RAWETHHI_					0	0	0			REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2689819335938	2	525.267407	1048.52026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.99	1	113.97	113.47	114.47	-0.019096								0	0	0	0.37664	1	29614	29614		2.5775	0	1		+		36910	16250	21695	21696	44621	44621					-0.0020575891962835158
RAWSKQKHTT	10	Unmodified	_RAWSKQKHTT_					0	0	0		ENSG00000144857|ENST00000682979|BOC;nc|ENSG00000144857|Q9BWV1|BOC	ENSG00000144857|ENST00000682979|BOC	ENSG00000144857|ENST00000682979|BOC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.2142028808594	3	414.894911	1241.6629	-0.075799	-3.1448E-05	-0.14342	-5.9503E-05	-0.21922	-9.0952E-05	415.2296945615474	17.565	0.29217	17.565	17.368	17.66	0					12	9	2	0	0	0	0.32034	1	1647	1647		4.7159	2.0847	1	13490			36911	4619	21696	21697	44622	44622					0.0517382875173098
RAYHKYKAK	9	Unmodified	_RAYHKYKAK_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.8355712890625	2	582.835457	1163.65636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.014	1	11.918	11.418	12.418	-0.096607								0	0	0	0.23852	1	3	3		10.074	2.9722	1				36912	5505	21697	21698	44623	44623					0.08107935591010573
RAYHKYKAK	9	Unmodified	_RAYHKYKAK_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.8353271484375	2	582.835457	1163.65636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.029	1	11.96	11.46	12.46	-0.06806								0	0	0	0.23852	1	4	4		10.074	2.9722	1				36913	5505	21697	21698	44624	44624					0.08107935591010573
RAYRPDKAVTL	11	Unmodified	_RAYRPDKAVTL_					0	0	0			REV__ENSG00000120860|ENST00000240079|WASHC3	REV__ENSG00000120860|ENST00000240079|WASHC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.5820617675781	3	430.582333	1288.72517	-0.023042	-9.9215E-06	-0.73229	-0.00031531	-0.75533	-0.00032523	430.5819959491201	31.98	1.0299	32.021	31.696	32.726	0.040991					72	36	3	0	0	0	0.26921	1	6015	6015		15.538	0	1	1254000	+		36914	15097	21698	21699	44625	44625					0.09235555100076454
RCADENLFNN	10	Unmodified	_RCADENLFNN_					0	0	0			REV__ENSG00000158901|ENST00000289953|WFDC8	REV__ENSG00000158901|ENST00000289953|WFDC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.2931518554688	2	598.261662	1194.50877	0.41506	0.00024832	-0.45735	-0.00027362	-0.042289	-2.53E-05	598.2616358746874	69.667	1.9483	69.733	69.205	71.154	0.066048					109	69	3	0	0	0	0.30555	1	17573	17573		20.415	3.3016	1	341350	+		36915	16829	21699	21700	44626	44626					-0.08070368795915783
RCALQPHLLK	10	Unmodified	_RCALQPHLLK_					0	0	0			REV__nc|ENSG00000145757|Q9BWV2-3|SPATA9	REV__nc|ENSG00000145757|Q9BWV2-3|SPATA9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8456420898438	2	589.844968	1177.67538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.24	1	115.22	114.72	115.72	-0.020988								0	0	0	0.38126	1	29890	29890		1.6526	0.17072	1		+		36916	16306	21700	21701	44627	44627					0.09365148890401542
RCALQPHLLK	10	Unmodified	_RCALQPHLLK_					0	0	0			REV__nc|ENSG00000145757|Q9BWV2-3|SPATA9	REV__nc|ENSG00000145757|Q9BWV2-3|SPATA9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8453369140625	2	589.844968	1177.67538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.49	1	118.46	117.96	118.96	-0.024147								0	0	0	0.38202	1	30625	30625		0.40072	0	1		+		36917	16306	21700	21701	44628	44628					0.09365148890401542
RCALQPHLLK	10	Unmodified	_RCALQPHLLK_					0	0	0			REV__nc|ENSG00000145757|Q9BWV2-3|SPATA9	REV__nc|ENSG00000145757|Q9BWV2-3|SPATA9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8450927734375	2	589.844968	1177.67538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.68	1	111.69	111.19	112.19	0.0131								0	0	0	0.37664	1	29072	29072		3.5965	0.60125	1		+		36918	16306	21700	21701	44629	44629					0.09365148890401542
RCALQPHLLK	10	Unmodified	_RCALQPHLLK_					0	0	0			REV__nc|ENSG00000145757|Q9BWV2-3|SPATA9	REV__nc|ENSG00000145757|Q9BWV2-3|SPATA9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8458862304688	2	589.844968	1177.67538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.92	1	114.93	114.43	115.43	0.016708								0	0	0	0.38126	1	29874	29874		1.6526	0	1		+		36919	16306	21700	21701	44630	44630					0.09365148890401542
RCFCNCDDL	9	Unmodified	_RCFCNCDDL_					0	0	0		nc|ENSG00000112053|Q96RN1-4|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8;nc|ENSG00000112053|Q96RN1-2|SLC26A8;nc|ENSG00000112053|Q96RN1-3|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7018432617188	2	544.701537	1087.38852	0.30679	0.00016711	0.76686	0.00041771	1.0736	0.00058482	544.7018767366975	61.39	1.0876	61.39	60.908	61.996	0					106	40	4	0	0	0	0.31417	2	15090	15090;15146		6.7232	1.9672	1	1808100			36920	2407	21701	21702	44631;44632	44631					-0.15167816385564947
RCFCNCDDL	9	Unmodified	_RCFCNCDDL_					0	0	0		nc|ENSG00000112053|Q96RN1-4|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8;nc|ENSG00000112053|Q96RN1-2|SLC26A8;nc|ENSG00000112053|Q96RN1-3|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7020874023438	2	544.701537	1087.38852	0.34942	0.00019033	0.58067	0.00031629	0.93009	0.00050662	544.70180059321	61.3	1.028	61.397	60.896	61.924	0.096985					108	37	4	0	0	0	0.31417	1	15054	15054		6.7232	1.9672	1	1917200			36921	2407	21701	21702	44633	44633					-0.15167816385564947
RCFCNCDDL	9	Unmodified	_RCFCNCDDL_					0	0	0		nc|ENSG00000112053|Q96RN1-4|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8;nc|ENSG00000112053|Q96RN1-2|SLC26A8;nc|ENSG00000112053|Q96RN1-3|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	nc|ENSG00000112053|Q96RN1-4|SLC26A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7020263671875	2	544.701537	1087.38852	0.4224	0.00023008	0.43145	0.00023501	0.85385	0.00046509	544.7018257736339	61.311	1.0667	61.302	60.838	61.905	-0.0094528					128	38	6	0	0	0	0.31417	1	15081	15081		6.7232	3.1267	1	2102800			36922	2407	21701	21702	44634	44634					-0.15167816385564947
RCFKYRVEL	9	Unmodified	_RCFKYRVEL_					0	0	0			REV__ENST00000503914.1_1_4:128802289-128804548:+|nuORF	REV__ENST00000503914.1_1_4:128802289-128804548:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.79345703125	2	607.32915	1212.64375	0.63226	0.00038399	-0.26892	-0.00016332	0.36334	0.00022067	607.3290795558975	44.4	0.54039	44.468	44.199	44.739	0.068569					51	19	3	0	0	0	0.25622	1	9778	9778		7.2892	7.2892	1	616980	+		36923	21726	21702	21703	44635	44635					0.0459315613650233
RCGRGGSPGF	10	Unmodified	_RCGRGGSPGF_					0	0	0		ENST00000256429.7_1_18:51750835-51751039:-|nuORF	ENST00000256429.7_1_18:51750835-51751039:-|nuORF	ENST00000256429.7_1_18:51750835-51751039:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2375793457031	2	497.237793	992.461032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.599	1	84.586	84.086	85.086	-0.01284								0	0	0	0.3629	1	22173	22173		9.3831	0.78985	1				36924	8929	21703	21704	44636	44636					-0.03549978205455773
RCKKKKRDR	9	Unmodified	_RCKKKKRDR_					0	0	0		ENST00000457924.2_1_17:20279644-20279995:-|nuORF	ENST00000457924.2_1_17:20279644-20279995:-|nuORF	ENST00000457924.2_1_17:20279644-20279995:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.5840148925781	3	406.583902	1216.72988	-0.27182	-0.00011052	-0.091907	-3.7368E-05	-0.36373	-0.00014789	406.58383999069775	103.72	0.42398	103.72	103.67	104.1	0.0082703					90	56	2	0	0	0	0.34536	2	27597	27597;27622		1.0715	0.50829	1	1943000			36925	10708	21704	21705	44637;44638	44637					0.1301816076183968
RCLQPSLPHT	10	Unmodified	_RCLQPSLPHT_					0	0	0		ENST00000397420.7_1_11:838599-838812:+|nuORF	ENST00000397420.7_1_11:838599-838812:+|nuORF	ENST00000397420.7_1_11:838599-838812:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3035278320312	2	576.303133	1150.59171	0.59502	0.00034291	-0.17234	-9.9322E-05	0.42267	0.00024359	576.302915800622	20.591	0.48334	20.481	20.296	20.779	-0.11003					32	16	3	0	0	0	0.40106	1	2584	2584		3.2813	0.28607	1	202080			36926	10138	21705	21706	44639	44639					0.022439927227196677
RCLRFLFVVA	10	Unmodified	_RCLRFLFVVA_					0	0	0		ENST00000326397.9_1_4:184580101-184580179:-|nuORF	ENST00000326397.9_1_4:184580101-184580179:-|nuORF	ENST00000326397.9_1_4:184580101-184580179:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.5887451171875	3	408.574233	1222.70087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.901	1	39.993	39.493	40.493	0.09267								0	0	0	0.37664	1	8461	8461		1.7423	0	1				36927	9415	21706	21707	44640	44640					0.09842623412873763
RCLWQPEVI	9	Unmodified	_RCLWQPEVI_					0	0	0			REV__nc|ENSG00000188158|Q6T4R5-2|NHS	REV__nc|ENSG00000188158|Q6T4R5-2|NHS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3027954101562	2	572.302601	1142.59065	0.31871	0.0001824	0.19878	0.00011376	0.51749	0.00029616	572.3026845478422	37.322	0.78011	37.415	37.142	37.922	0.093018					76	28	4	0	0	0	0.12642	1	7731	7731		34.402	3.7652	1	1249700	+		36928	18543	21707	21708	44641	44641					0.02505778353815913
RCPTLPCLS	9	Unmodified	_RCPTLPCLS_					0	0	0			REV__ENSG00000260220|ENST00000638797|CCDC187	REV__ENSG00000260220|ENST00000638797|CCDC187	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2498779296875	2	495.24898	988.483407	0.7974	0.00039491	0.97998	0.00048534	1.7774	0.00088025	495.2494500380552	56.368	0.83439	56.368	56.074	56.908	0					66	30	3	0	0	0	0.23007	1	13520	13520		19.257	19.257	1	2888300	+		36929	19275	21708	21709	44642	44642					-0.011295148520616749
RCRLSLVLRPP	11	Unmodified	_RCRLSLVLRPP_					0	0	0		ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2676696777344	3	437.267691	1308.78124	-0.077082	-3.3705E-05	0.23466	0.00010261	0.15758	6.8904E-05	437.26767811067197	46.2	1.688	46.2	45.64	47.328	0					171	60	4	0	0	0	0.42246	3	10403	10303;10403;10453		8.2864	4.1698	1	7250800			36930	8293	21709	21710	44643;44644;44645	44644					0.13920484735899663
RCRLSLVLRPP	11	Unmodified	_RCRLSLVLRPP_					0	0	0		ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.26788330078125	3	437.267691	1308.78124	0.17842	7.8016E-05	0.42325	0.00018507	0.60167	0.00026309	437.2678667037949	44.808	1.1647	44.877	44.463	45.628	0.068569					169	41	5	0	0	0	0.46171	1	10048	10048		3.134	0.88123	1	4892200			36931	8293	21709	21710	44646	44646					0.13920484735899663
RCRLSLVLRPP	11	Unmodified	_RCRLSLVLRPP_					0	0	0		ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2677307128906	3	437.267691	1308.78124	-0.12309	-5.3824E-05	0.34774	0.00015206	0.22465	9.8233E-05	437.26773201521036	45.995	1.6848	46.055	45.565	47.25	0.059834					200	61	5	0	0	0	0.45822	1	10250	10250		3.5927	0.27303	1	7201400			36932	8293	21709	21710	44647	44647					0.13920484735899663
RCRLSLVLRPP	11	Unmodified	_RCRLSLVLRPP_					0	0	0		ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2678527832031	3	437.267691	1308.78124	0.35583	0.00015559	0.41293	0.00018056	0.76875	0.00033615	437.26780413488876	47.795	1.6112	47.843	47.187	48.799	0.04752					187	59	4	0	0	0	0.44351	4	10843	10794;10843;10897;11006		5.5233	3.2706	1	6899900			36933	8293	21709	21710	44648;44649;44650;44651	44649					0.13920484735899663
RCRLSLVLRPP	11	Unmodified	_RCRLSLVLRPP_					0	0	0		ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.26788330078125	3	437.267691	1308.78124	0.10712	4.684E-05	0.013972	6.1093E-06	0.12109	5.2949E-05	437.2675831394804	45.96	1.6976	46.025	45.647	47.345	0.065048					200	60	5	0	0	0	0.44351	4	10297	10248;10297;10342;10517		5.5233	1.1171	1	6723500			36934	8293	21709	21710	44652;44653;44654;44655	44653					0.13920484735899663
RCRLSLVLRPP	11	Unmodified	_RCRLSLVLRPP_					0	0	0		ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2679138183594	3	437.267691	1308.78124	0.2896	0.00012663	0.52204	0.00022827	0.81164	0.0003549	437.2678387324393	47.779	1.5644	47.823	47.157	48.721	0.04332					167	58	4	0	0	0	0.46002	3	10834	10785;10834;10938		3.3557	3.3557	1	7942200			36935	8293	21709	21710	44656;44657;44658	44657					0.13920484735899663
RCRLSLVLRPP	11	Unmodified	_RCRLSLVLRPP_					0	0	0		ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	437.267691	1308.78124	0.26054	0.00011393	0.53185	0.00023256	0.79239	0.00034649	437.2678527307614	47.834	1.4214	47.834	47.244	48.665	0	0.00078106	6.1685E-05	NaN	5.5233	167	50	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9208400			36936	8293	21709	21710							0.13920484735899663
RCRSERSF	8	Unmodified	_RCRSERSF_					0	0	0			REV__ENST00000511915.1_1_12:112123944-112130701:+|nuORF	REV__ENST00000511915.1_1_12:112123944-112130701:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2758178710938	2	520.75635	1039.49815	0.53853	0.00028044	2.44	0.0012707	2.9786	0.0015511	521.2595981739279	83.371	0.43525	83.445	83.239	83.674	0.073097					20	15	2	0	0	0	0.34167	1	21781	21781		11.64	0.81637	1	97386	+		36937	21796	21710	21711	44659	44659					-0.020023066597104844
RCSRRWRRRLS	11	Unmodified	_RCSRRWRRRLS_					0	0	0			REV__ENST00000590898.5_1_18:33647318-33647387:-|nuORF	REV__ENST00000590898.5_1_18:33647318-33647387:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2928161621094	3	511.291893	1530.85385	0.38508	0.00019689	0.38561	0.00019716	0.77068	0.00039404	511.29267917658547	38.652	0.40963	38.75	38.542	38.951	0.097527					21	14	2	0	0	0	0.33303	1	8090	8090		1.1098	0	1	338850	+		36938	22559	21711	21712	44660	44660					0.10965631582030255
RCSRRWRRRLS	11	Unmodified	_RCSRRWRRRLS_					0	0	0			REV__ENST00000590898.5_1_18:33647318-33647387:-|nuORF	REV__ENST00000590898.5_1_18:33647318-33647387:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	511.291893	1530.85385	-0.048726	-2.4913E-05	-0.19529	-9.9852E-05	-0.24402	-0.00012477	511.2927835847772	38.787	0.5542	38.787	38.518	39.073	0	0.018896	-0.00054188	NaN	1.1098	29	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267830	+		36939	22559	21711	21712							0.10965631582030255
RCVQFILVLII	11	Unmodified	_RCVQFILVLII_					0	0	0			REV__ENST00000441380.1_1_6:29718508-29718580:-|nuORF	REV__ENST00000441380.1_1_6:29718508-29718580:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.6083984375	3	439.608943	1315.805	0.26713	0.00011743	-0.82662	-0.00036339	-0.55949	-0.00024596	439.60842874252523	87.056	0.59904	87.056	86.571	87.17	0					63	22	4	0	0	0	0.3333	1	22824	22824		1.3296	0	1	1168500	+		36940	21051	21712	21713	44661	44661					0.15972905449734753
RCYFKSGDK	9	Unmodified	_RCYFKSGDK_					0	0	0			REV__ENST00000470945.1_1_2:179330657-179343310:-|nuORF	REV__ENST00000470945.1_1_2:179330657-179343310:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.26904296875	2	552.268758	1102.52296	0.32228	0.00017798	-0.2931	-0.00016187	0.029178	1.6114E-05	552.2687487345381	16.488	0.37895	16.426	16.324	16.703	-0.062534					17	12	2	0	0	0	0.34681	1	1363	1363		1.8442	0.19162	1	21965	+		36941	21353	21713	21714	44662	44662					-0.024196715769903676
RCYLFICTV	9	Unmodified	_RCYLFICTV_					0	0	0			REV__ENST00000511186.5_1_5:118788168-118811542:+|nuORF	REV__ENST00000511186.5_1_5:118788168-118811542:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.8037719726562	2	559.28028	1116.54601	0.24495	0.000137	3.9264	0.002196	4.1714	0.002333	559.7844393109558	45.725	0.61425	45.785	45.536	46.15	0.059834					34	21	2	0	0	0	0.25622	1	10166	10166		7.2892	0.18751	1	348240	+		36942	21807	21714	21715	44663	44663					-0.007603687838809492
RDANDDPDDTI	11	Unmodified	_RDANDDPDDTI_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.56219482421875	3	416.177589	1245.51094	0.45413	0.000189	3.8494	0.001602	4.3035	0.001791	416.5148461609237	21.266	0.49063	21.156	20.808	21.298	-0.11003					21	16	2	0	0	0	0.33303	1	2826	2826		2.4348	1.808	1	34116	+		36943	14069	21715	21716	44664	44664					-0.1019966157714407
RDAPIVNKV	9	Unmodified	_RDAPIVNKV_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3186340332031	2	506.300916	1010.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.312	1	24.312	23.812	24.812	0								0	0	0	0.16154	1	3712	3712		32.037	11.623	1				36944	2642	21716	21717	44665	44665					0.08240851571463281
RDAPIVNKV	9	Unmodified	_RDAPIVNKV_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.31854248046875	2	506.300916	1010.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.375	1	24.303	23.803	24.803	-0.072559								0	0	0	0.1768	1	3734	3734		28.495	6.9575	1				36945	2642	21716	21717	44666	44666					0.08240851571463281
RDAPIVNKV	9	Unmodified	_RDAPIVNKV_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.31890869140625	2	506.300916	1010.58728	0.20755	0.00010508	-1.9966	-0.0010109	-1.789	-0.00090579	506.30075915044176	24.417	0.68237	24.379	23.909	24.591	-0.038927					55	23	3	0	0	0	0.19208	1	3740	3740		33.445	7.1768	1	240930			36946	2642	21716	21717	44667	44667					0.08240851571463281
RDDNARQLA	9	Unmodified	_RDDNARQLA_					0	0	0			REV__nc|ENSG00000066135|O75164-2|KDM4A	REV__nc|ENSG00000066135|O75164-2|KDM4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.770751953125	2	529.770511	1057.52647	0.19013	0.00010073	0.80038	0.00042402	0.99051	0.00052474	529.7707770606382	25.238	0.56775	25.182	24.946	25.514	-0.055929					42	19	3	0	0	0	0.29176	1	4024	4024		10.074	1.9184	1	366910	+		36947	13676	21717	21718	44668	44668					7.145212293835357E-06
RDEEQHLESH	10	Unmodified	_RDEEQHLESH_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.3688354492188	2	640.286722	1278.55889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.756	1	83.834	83.334	84.334	0.077095								0	0	0	0.38126	1	21918	21918		1.6526	0.17072	1				36948	4248	21718	21719	44669	44669					-0.06924542866408956
RDEIEKYYKL	10	Unmodified	_RDEIEKYYKL_					0	0	0			REV__ENSG00000132467|ENST00000254803|UTP3	REV__ENSG00000132467|ENST00000254803|UTP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.9103698730469	3	452.910115	1355.70852	0.06452	2.9222E-05	0.016608	7.5217E-06	0.081127	3.6743E-05	452.9102574445681	17.998	0.61229	17.998	17.719	18.332	0					49	20	3	0	0	0	0.40943	1	1816	1816		1.7423	0.52744	1	96156	+		36949	15573	21719	21720	44670	44670					0.044890094234460776
RDEWAHSL	8	Unmodified	_RDEWAHSL_					0	0	0			REV__nc|ENSG00000188779|P84550-2|SKOR1	REV__nc|ENSG00000188779|P84550-2|SKOR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.272216796875	2	507.243598	1012.47264	0.065482	3.3215E-05	-0.7325	-0.00037156	-0.66702	-0.00033834	507.2431079448977	22.883	0.68078	22.796	22.484	23.165	-0.087608					49	23	3	0	0	0	0.3366	1	3388	3388		18.135	1.1927	1	180300	+		36950	23144	21720	21721	44671	44671					-0.033094579104840705
RDFRIPKQPS	10	Unmodified	_RDFRIPKQPS_					0	0	0		ENST00000469700.1_1_20:47707375-47708591:+|nuORF	ENST00000469700.1_1_20:47707375-47708591:+|nuORF	ENST00000469700.1_1_20:47707375-47708591:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5521545410156	3	415.235045	1242.6833	-0.18857	-7.83E-05	-3.5686	-0.0014818	-3.7572	-0.0015601	415.23352026608114	16.224	0.50634	16.224	15.842	16.349	0					27	17	2	0	0	0	0.31867	1	1162	1162		7.9454	1.711	1	17752			36951	10859	21721	21722	44672	44672					0.07166999411560937
RDFRIPKQPS	10	Unmodified	_RDFRIPKQPS_					0	0	0		ENST00000469700.1_1_20:47707375-47708591:+|nuORF	ENST00000469700.1_1_20:47707375-47708591:+|nuORF	ENST00000469700.1_1_20:47707375-47708591:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	415.235045	1242.6833	0.0694	2.8817E-05	-4.0037	-0.0016625	-3.9343	-0.0016336	415.23312992998797	16.376	0.59105	16.262	16.047	16.638	-0.11434	0.058596	-0.00010802	NaN	7.9454	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20953			36952	10859	21721	21722							0.07166999411560937
RDFRIPKQPS	10	Unmodified	_RDFRIPKQPS_					0	0	0		ENST00000469700.1_1_20:47707375-47708591:+|nuORF	ENST00000469700.1_1_20:47707375-47708591:+|nuORF	ENST00000469700.1_1_20:47707375-47708591:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	415.235045	1242.6833	0.11883	4.9341E-05	-4.323	-0.0017951	-4.2042	-0.0017457	415.2331654418046	16.187	0.52483	16.124	15.943	16.468	-0.062534	-0.079364	-0.00050588	NaN	7.9454	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31008			36953	10859	21721	21722							0.07166999411560937
RDFTVSALHGD	11	Unmodified	_RDFTVSALHGD_					0	0	0		nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF	nc|ENSG00000156976|Q14240-2|EIF4A2	nc|ENSG00000156976|Q14240-2|EIF4A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.3192749023438	2	609.299101	1216.58365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.132	1	52.182	51.682	52.682	0.050575								0	0	0	0.32191	1	12215	12215		14.405	2.1647	1				36954	5273	21722	21723	44673	44673					-0.01597862993048693
RDGLANVVMF	10	Oxidation (M)	_RDGLANVVM(Oxidation (M))F_		RDGLANVVM(1)F		RDGLANVVM(50)F	0	0	1			REV__ENSG00000164953|ENST00000453321|TMEM67	REV__ENSG00000164953|ENST00000453321|TMEM67	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.2896728515625	2	569.289691	1136.56483	0.069023	3.9294E-05	0.032225	1.8345E-05	0.10125	5.7639E-05	569.2897051766987	61.948	1.5223	61.939	61.613	63.136	-0.0085526					181	55	5	0	0	0	0.091471	1	15247	15247		49.933	13.806	1	9760800	+		36955	17195	21723	21724	44674	44674		1002			0.0020088411154119967
RDGNPGNDGP	10	Unmodified	_RDGNPGNDGP_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.71868896484375	2	499.717944	997.421336	0.15656	7.8234E-05	0.98828	0.00049386	1.1448	0.0005721	499.718488832469	16.196	0.58335	16.082	15.838	16.421	-0.11434					42	19	3	0	0	0	0.36786	1	1275	1275		9.3831	0.035688	1	154080			36956	5867	21724	21725	44675	44675					-0.07747826675176839
RDHEGRYSEAV	11	Unmodified	_RDHEGRYSEAV_					0	0	0		ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	ENSG00000131375|ENST00000253693|CAPN7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.20843505859375	3	440.209335	1317.60618	0.29117	0.00012817	-1.749	-0.00076992	-1.4578	-0.00064174	440.2084352449577	46.021	0.52792	46.021	45.694	46.222	0					42	18	3	0	0	0	0.41892	1	10358	10358		8.7518	1.7147	1	570280			36957	3557	21725	21726	44676	44676					-0.039922635954326324
RDHLGRFP	8	Unmodified	_RDHLGRFP_					0	0	0			REV__ENST00000380243.8_2_14:99980768-99980945:-|nuORF	REV__ENST00000380243.8_2_14:99980768-99980945:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.755859375	2	499.26995	996.525347	0.39144	0.00019543	2.4735	0.0012349	2.8649	0.0014304	499.27120435420716	70.933	0.33202	70.933	70.657	70.989	0					18	11	2	0	0	0	0.3366	1	17953	17953		18.135	0	1	164010	+		36958	20545	21726	21727	44677	44677					0.026945449429945256
RDIHPGVAF	9	Unmodified	_RDIHPGVAF_					0	0	0		ENST00000547785.2_1_14:20147170-20147386:+|nuORF	ENST00000547785.2_1_14:20147170-20147386:+|nuORF	ENST00000547785.2_1_14:20147170-20147386:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.8296813964844	2	506.272158	1010.52976	0.16546	8.3769E-05	0.68007	0.0003443	0.84553	0.00042807	506.2723469733994	33.346	0.36211	33.413	33.187	33.549	0.066704					15	12	2	0	0	0	0.24688	1	6418	6418		14.838	5.4908	1	104100			36959	11772	21727	21728	44678	44678					0.024920093659034137
RDKAWVNH	8	Unmodified	_RDKAWVNH_					0	0	0			REV__nc|ENSG00000198838|Q15413-3|RYR3	REV__nc|ENSG00000198838|Q15413-3|RYR3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2684326171875	2	513.267407	1024.52026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.925	1	89.925	89.425	90.425	0								0	0	0	0.37183	1	23816	23816		4.756	0.42677	1		+		36960	18873	21728	21729	44679	44679					0.008982410803582752
RDLAPKDR	8	Unmodified	_RDLAPKDR_					0	0	0		nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4	nc|ENSG00000105808|O43374-2|RASA4	nc|ENSG00000105808|O43374-2|RASA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7877502441406	2	485.775065	969.535577	0.052075	2.5297E-05	-0.46752	-0.00022711	-0.41544	-0.00020181	485.7749195960147	18.818	1.2329	18.818	18.535	19.768	0					117	43	5	0	0	0	0.45169	1	2321	2321		5.2307	0.90143	1	2132500			36961	2026	21729	21730	44680	44680					0.04959107877562019
RDLEMKLVPAK	11	Unmodified	_RDLEMKLVPAK_					0	0	0			REV__nc|ENSG00000114742|Q8TAF3-5|WDR48	REV__nc|ENSG00000114742|Q8TAF3-5|WDR48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.9195556640625	3	433.919957	1298.73804	-0.46399	-0.00020133	-0.11043	-4.7919E-05	-0.57442	-0.00024925	433.91989481319894	28.076	0.64107	28.076	27.739	28.381	0.00046921					53	22	4	0	0	0	0.47713	1	4834	4834		1.1098	0.41209	1	249330	+		36962	14844	21730	21731	44681	44681					0.10062250167970888
RDLFPTTTTI	10	Unmodified	_RDLFPTTTTI_					0	0	0			REV__nc|ENSG00000134765|Q08554-2|DSC1	REV__nc|ENSG00000134765|Q08554-2|DSC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3505249023438	2	582.816596	1163.61864	0.89835	0.00052357	-0.59488	-0.00034671	0.30347	0.00017687	582.8160857967027	50.524	0.73837	50.569	50.108	50.846	0.044888					39	26	3	0	0	0	0.23216	1	11697	11697		41.956	0	1	238260	+		36963	15700	21731	21732	44682	44682					0.04337379814865017
RDLRSANI	8	Unmodified	_RDLRSANI_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:111995672-112015899:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.275634765625	2	472.76724	943.519927	0.39226	0.00018545	-0.43174	-0.00020411	-0.039484	-1.8667E-05	472.7670835090227	86.406	0.68793	86.397	86.129	86.817	-0.0090103					43	26	3	0	0	0	0.34247	1	22755	22755		2.0598	0	1	276010			36964	428	21732	21733	44683	44683					0.045908213605116543
RDLRSANI	8	Unmodified	_RDLRSANI_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:111995672-112015899:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	472.76724	943.519927	0.28645	0.00013542	-0.048281	-2.2826E-05	0.23817	0.0001126	472.7671081489844	86.485	0.7335	86.485	86.175	86.909	0	0.049893	0.00021874	NaN	2.0598	44	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269870			36965	428	21732	21733							0.045908213605116543
RDLRSANI	8	Unmodified	_RDLRSANI_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:111995672-112015899:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	472.76724	943.519927	0.27894	0.00013188	-0.4677	-0.00022111	-0.18876	-8.9237E-05	472.76717813616347	86.34	0.65966	86.424	86.162	86.821	0.084251	-0.011675	-0.00017783	NaN	2.0598	50	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312880			36966	428	21732	21733							0.045908213605116543
RDLRWPSRS	9	Unmodified	_RDLRWPSRS_					0	0	0			REV__ENST00000417775.5_1_1:75190483-75198727:-|nuORF	REV__ENST00000417775.5_1_1:75190483-75198727:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8340454101562	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.361	1	80.426	79.926	80.926	0.065094								0	0	0	0.24066	1	20872	20872		9.3831	0	1		+		36967	20831	21733	21734	44684	44684					0.0420927306320209
RDLSKFAR	8	Unmodified	_RDLSKFAR_					0	0	0			REV__ENSG00000256812|ENST00000457326|CAPNS2	REV__ENSG00000256812|ENST00000457326|CAPNS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2541198730469	2	496.785433	991.556313	0.1868	9.2802E-05	0.43308	0.00021515	0.61988	0.00030795	496.78564348618005	28.846	0.52085	28.847	28.58	29.1	0.0004673					31	18	2	0	0	0	0.3418	1	5079	5079		12.241	2.8575	1	216520	+		36968	19255	21734	21735	44685	44685					0.06019698257227901
RDLYRLPQR	9	Unmodified	_RDLYRLPQR_					0	0	0			REV__ENSG00000204316|ENST00000309352|MRPL38	REV__ENSG00000204316|ENST00000309352|MRPL38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.9034118652344	3	406.235156	1215.68364	-0.25509	-0.00010363	0.47339	0.00019231	0.2183	8.8681E-05	406.56969864575404	25.161	0.44721	25.105	24.918	25.365	-0.055931					25	15	2	0	0	0	0.25817	1	4031	4031		6.6304	0.43853	1	103710	+		36969	18934	21735	21736	44686	44686					0.0844241913141559
RDMHLVKKG	9	Unmodified	_RDMHLVKKG_					0	0	0			REV__ENSG00000203879|ENST00000447750|GDI1	REV__ENSG00000203879|ENST00000447750|GDI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2443237304688	2	542.308218	1082.60188	0.31421	0.0001704	-0.10104	-5.4795E-05	0.21316	0.0001156	542.3080937523674	15.354	0.22573	15.244	15.121	15.347	-0.10981					11	7	2	0	0	0	0.26031	1	1008	1008		3.5965	0	1	14211	+		36970	18910	21736	21737	44687	44687					0.06388600447940007
RDNKIGIKL	9	Unmodified	_RDNKIGIKL_					0	0	0		ENSG00000196865|ENST00000369301|NHLRC2;NHLRC2|p.D216Ifs*14|1|0.29|ENSG00000196865|chr10:113876832-113876832|A/-|frameshift_variant	ENSG00000196865|ENST00000369301|NHLRC2	ENSG00000196865|ENST00000369301|NHLRC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.771484375	2	528.82984	1055.64513	0.49026	0.00025927	-0.38791	-0.00020514	0.10235	5.4127E-05	528.8297208052677	33.342	0.46955	33.408	33.154	33.624	0.06636					19	16	2	0	0	0	0.25988	1	6381	6381		3.9444	0.66309	1	88654			36971	7907	21737	21738	44688	44688					0.11953113496883816
RDNLLYVW	8	Unmodified	_RDNLLYVW_					0	0	0		ENSG00000150471|ENST00000683033|ADGRL3;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;nc|ENSG00000150471|Q9HAR2-3|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.2882690429688	2	539.787641	1077.56073	0.49329	0.00026627	-1.8563	-0.001002	-1.363	-0.00073572	539.7865058573572	24.106	0.62978	24.067	23.878	24.507	-0.038927					34	21	2	0	0	0	0.34337	1	3767	3767		5.2307	0.90143	1	77806			36972	4911	21738	21739	44689	44689					0.02505162680131434
RDPNLIHYF	9	Unmodified	_RDPNLIHYF_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8023071289062	2	587.803823	1173.59309	0.15585	9.1608E-05	-1.4441	-0.00084887	-1.2883	-0.00075726	587.802667898845	19.269	0.56606	19.269	19.034	19.6	0					36	19	2	0	0	0	0.34681	2	2176	2176;2236		1.8442	0.19162	1	99948	+		36973	13940	21739	21740	44690;44691	44690					0.013239500831332407
RDPNLIHYF	9	Unmodified	_RDPNLIHYF_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.8037109375	2	587.803823	1173.59309	0.22089	0.00012984	-1.3722	-0.00080661	-1.1513	-0.00067677	587.8028472449399	19.426	0.69444	19.31	18.947	19.642	-0.11592					49	23	3	0	0	0	0.34681	1	2307	2307		1.8442	0.19162	1	81809	+		36974	13940	21739	21740	44692	44692					0.013239500831332407
RDPNLIHYF	9	Unmodified	_RDPNLIHYF_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.8024291992188	2	587.803823	1173.59309	0.32704	0.00019224	-2.2214	-0.0013058	-1.8944	-0.0011135	587.8026187991563	19.461	0.98225	19.406	19.08	20.062	-0.055693					70	34	3	0	0	0	0.34681	1	2257	2257		1.8442	0.19162	1	80217	+		36975	13940	21739	21740	44693	44693					0.013239500831332407
RDPNLIHYF	9	Unmodified	_RDPNLIHYF_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	587.803823	1173.59309	0.15585	9.1608E-05	-1.4441	-0.00084887	-1.2883	-0.00075726	587.802667898845	19.269	0.56606	19.269	19.034	19.6	0	-0.059073	0.00023969	NaN	1.8442	36	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99948	+		36976	13940	21739	21740							0.013239500831332407
RDPVPFKP	8	Unmodified	_RDPVPFKP_					0	0	0		ENST00000381103.6_1_5:61681328-61681442:+|nuORF	ENST00000381103.6_1_5:61681328-61681442:+|nuORF	ENST00000381103.6_1_5:61681328-61681442:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2716369628906	2	478.271627	954.528701	0.26393	0.00012623	0.00044896	2.1472E-07	0.26438	0.00012645	478.2715776799785	41.006	1.1445	41.096	40.367	41.511	0.090248					123	42	4	0	0	0	0.35947	1	8809	8809		24.021	0.87215	1	2514100			36977	9990	21740	21741	44694	44694					0.0496179499699565
RDPVPFKP	8	Unmodified	_RDPVPFKP_					0	0	0		ENST00000381103.6_1_5:61681328-61681442:+|nuORF	ENST00000381103.6_1_5:61681328-61681442:+|nuORF	ENST00000381103.6_1_5:61681328-61681442:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2716369628906	2	478.271627	954.528701	0.11004	5.2631E-05	0.16556	7.9181E-05	0.2756	0.00013181	478.27166413476317	40.938	1.1921	41.035	40.313	41.505	0.096622					129	43	4	0	0	0	0.35947	1	8785	8785		24.021	0.87215	1	2659800			36978	9990	21740	21741	44695	44695					0.0496179499699565
RDQFNDCDGF	10	Unmodified	_RDQFNDCDGF_					0	0	0			REV__nc|ENSG00000127377|Q8WXF5-2|CRYGN	REV__nc|ENSG00000127377|Q8WXF5-2|CRYGN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.1609802246094	3	406.161105	1215.46149	0.26782	0.00010878	-0.32135	-0.00013052	-0.053534	-2.1743E-05	406.16094654578893	74.766	0.69875	74.766	74.507	75.206	0					51	24	3	0	0	0	0.3994	1	19177	19177		3.5871	0	1	926870	+		36979	15339	21741	21742	44696	44696					-0.13762648066949623
RDQFNDCDGF	10	Unmodified	_RDQFNDCDGF_					0	0	0			REV__nc|ENSG00000127377|Q8WXF5-2|CRYGN	REV__nc|ENSG00000127377|Q8WXF5-2|CRYGN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.16119384765625	3	406.161105	1215.46149	-0.071921	-2.9212E-05	-0.13847	-5.6242E-05	-0.21039	-8.5454E-05	406.1610529408546	74.71	0.67096	74.762	74.488	75.159	0.052361					57	23	3	0	0	0	0.3994	1	19172	19172		3.5871	3.5871	1	788030	+		36980	15339	21741	21742	44697	44697					-0.13762648066949623
RDRARAAK	8	Unmodified	_RDRARAAK_					0	0	0			REV__nc|ENSG00000167397|Q9BQB6-3|VKORC1	REV__nc|ENSG00000167397|Q9BQB6-3|VKORC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.28759765625	2	472.280849	942.547145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.319	1	12.223	11.723	12.723	-0.096607								0	0	0	0.36336	1	93	93		8.5933	0.68312	1		+		36981	17383	21742	21743	44698	44698					0.07357349691551462
RDRAVDRPL	9	Unmodified	_RDRAVDRPL_					0	0	0			REV__NOTCH2|p.T2295Yfs*19|1|0.25|ENSG00000134250|chr1:119915839-119915840|-/TATA|frameshift_variant	REV__NOTCH2|p.T2295Yfs*19|1|0.25|ENSG00000134250|chr1:119915839-119915840|-/TATA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.312744140625	2	549.312346	1096.61014	0.2755	0.00015134	0.31263	0.00017173	0.58813	0.00032307	549.3123900534589	16.531	0.70834	16.417	15.987	16.695	-0.11434					55	24	4	0	0	0	0.26068	1	1387	1387		3.2813	1.4371	1	89699	+		36982	15662	21743	21744	44699	44699					0.06569870688940682
RDRDFRRQL	9	Unmodified	_RDRDFRRQL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	631.3466186523438	2	631.347252	1260.67995	0.21803	0.00013765	-0.73454	-0.00046375	-0.51651	-0.0003261	631.3467943221319	25.563	0.41286	25.563	25.328	25.741	0					30	13	3	0	0	0	0.31164	1	4090	4090		10.824	0.67336	1	155950			36983	1896	21744	21745	44700	44700					0.06003749357569177
RDRDFRRQL	9	Unmodified	_RDRDFRRQL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.3468017578125	2	631.347252	1260.67995	0.10515	6.6385E-05	-1.0685	-0.00067458	-0.96332	-0.00060819	631.3465935094287	25.614	0.41743	25.583	25.347	25.764	-0.031408					32	14	3	0	0	0	0.32885	1	4095	4095		7.2892	2.3922	1	194330			36984	1896	21744	21745	44701	44701					0.06003749357569177
RDRDRSRGRSI	11	Unmodified	_RDRDRSRGRSI_					0	0	0		nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.R438Kfs*23|1|0.18|ENSG00000119139|chr9:69227863-69227864|-/A|frameshift_variant;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.25628662109375	3	458.58714	1372.73959	0.11362	5.2105E-05	-0.34356	-0.00015755	-0.22994	-0.00010545	458.58699290793066	33.004	0.60597	33.059	32.71	33.316	0.054375					34	21	2	0	0	0	0.33169	1	6289	6289		6.2344	1.5184	1	205210			36985	2861	21745	21746	44702	44702					0.06813020300933204
RDRDRSRGRSI	11	Unmodified	_RDRDRSRGRSI_					0	0	0		nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;TJP2|p.R438Kfs*23|1|0.18|ENSG00000119139|chr9:69227863-69227864|-/A|frameshift_variant;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	nc|ENSG00000119139|Q9UDY2-6|TJP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	458.58714	1372.73959	0.075664	3.4698E-05	-0.45864	-0.00021033	-0.38297	-0.00017563	458.5868976254834	32.982	0.63892	33.037	32.73	33.369	0.055313	-0.010729	-8.4547E-05	NaN	6.2344	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165760			36986	2861	21745	21746							0.06813020300933204
RDRKLNLLL	9	Unmodified	_RDRKLNLLL_					0	0	0			REV__ENSG00000152503|ENST00000513154|TRIM36	REV__ENSG00000152503|ENST00000513154|TRIM36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.3492431640625	2	570.864215	1139.71388	0.092266	5.2671E-05	0.03891	2.2212E-05	0.13118	7.4884E-05	570.8641991364203	12.089	0.23599	11.993	11.912	12.148	-0.096607					23	10	3	0	0	0	0.35608	1	62	62		0.45834	0	1	109540	+		36987	16581	21746	21747	44703	44703					0.1496077779661391
RDRRTGVLLH	10	Unmodified	_RDRRTGVLLH_					0	0	0		ENST00000322310.9_1_9:140084508-140084799:+|nuORF	ENST00000322310.9_1_9:140084508-140084799:+|nuORF	ENST00000322310.9_1_9:140084508-140084799:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5694274902344	3	408.242422	1221.70544	-0.21852	-8.9209E-05	0.61469	0.00025094	0.39618	0.00016174	408.24270851565416	16.164	0.22935	16.164	16.093	16.322	0					11	7	2	0	0	0	0.32165	1	1245	1245		0.69767	0	1	13621			36988	9389	21747	21748	44704	44704					0.10345223879994592
RDRTQQSDD	9	Unmodified	_RDRTQQSDD_					0	0	0		ENST00000426028.2_1_9:29825693-29826221:-|nuORF	ENST00000426028.2_1_9:29825693-29826221:-|nuORF	ENST00000426028.2_1_9:29825693-29826221:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.75244140625	2	560.752515	1119.49048	0.42078	0.00023595	-0.28026	-0.00015715	0.14053	7.8801E-05	560.7522455827319	19.976	0.51412	19.86	19.612	20.126	-0.11592					38	17	3	0	0	0	0.26168	1	2386	2386		1.8442	0	1	111840			36989	10414	21748	21749	44705	44705					-0.06448787446288406
RDRVPDAL	8	Unmodified	_RDRVPDAL_					0	0	0			REV__ENST00000526970.5_1_8:144766694-144767012:+|nuORF	REV__ENST00000526970.5_1_8:144766694-144767012:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7539978027344	2	471.261791	940.509028	0.02802	1.3205E-05	-0.25796	-0.00012157	-0.22994	-0.00010836	471.26159231605425	24.958	0.58862	24.902	24.661	25.25	-0.055931					49	20	3	0	0	0	0.43302	1	3892	3892		11.64	1.5664	1	293400	+		36990	21968	21749	21750	44706	44706					0.03639418986222154
RDSKRFQIPWK	11	Unmodified	_RDSKRFQIPWK_					0	0	0		ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.27716064453125	3	487.608882	1459.80482	0.20849	0.00010166	-1.1096	-0.00054107	-0.90114	-0.0004394	487.94274545009444	26.586	0.29333	26.547	26.37	26.664	-0.038671					12	9	2	0	0	0	0.3333	1	4369	4369		1.3296	0.11481	1	53028			36991	2800	21750	21751	44707	44707					0.09330621774074643
RDSKRFQIPWK	11	Unmodified	_RDSKRFQIPWK_					0	0	0		ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	ENSG00000117595|ENST00000367021|IRF6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	487.608882	1459.80482	0.46361	0.00022606	-1.3838	-0.00067474	-0.92016	-0.00044868	487.94249270745746	26.597	0.25938	26.575	26.381	26.64	-0.022236	0.014013	-0.00021798	NaN	2.6312	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55959			36992	2800	21750	21751							0.09330621774074643
RDTKITLV	8	Unmodified	_RDTKITLV_					0	0	0			REV__ENSG00000061794|ENST00000081029|MRPS35	REV__ENSG00000061794|ENST00000081029|MRPS35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.307861328125	2	473.290017	944.565481	-0.20846	-9.8661E-05	-0.00067745	-3.2063E-07	-0.20914	-9.8982E-05	473.28996839943335	12.22	0.46182	12.152	11.943	12.405	-0.06806					49	19	3	0	0	0	0.44389	1	18	18		7.9102	0	1	378640	+		36993	13627	21751	21752	44708	44708					0.09098046822884953
RDTLITAY	8	Unmodified	_RDTLITAY_					0	0	0			REV__ENSG00000176900|ENST00000322049|OR51T1	REV__ENSG00000176900|ENST00000322049|OR51T1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.2358093261719	2	476.758549	951.502546	0.039273	1.8724E-05	-0.51782	-0.00024688	-0.47855	-0.00022815	476.757700975125	15.402	0.34325	15.292	15.121	15.464	-0.10981					16	11	2	0	0	0	0.34408	1	1025	1025		2.3027	0	1	31960	+		36994	17957	21752	21753	44709	44709					0.024854810348415413
RDTLTIVK	8	Unmodified	_RDTLTIVK_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.K6712Vfs*24|1|0.16|ENSG00000175820|chr13:102730542-102730564|CTGAAAGAACTTGAGTATCTTTC/-|frameshift_variant;CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.3079528808594	2	473.290017	944.565481	-0.24546	-0.00011618	-0.00040069	-1.8964E-07	-0.24587	-0.00011637	473.28999804619076	12.206	0.42141	12.206	12.011	12.433	0					42	17	3	0	0	0	0.43302	1	14	14		11.64	2.8949	1	390770			36995	6886	21753	21754	44710	44710					0.09098046822896322
RDVFLLKNQ	9	Unmodified	_RDVFLLKNQ_					0	0	0		ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000142945|Q99661-2|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	ENSG00000142945|ENST00000372224|KIF2C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.8397216796875	2	566.827298	1131.64004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.95	1	26.95	26.45	27.45	0								0	0	0	0.17427	1	4508	4508		29.082	2.8134	1				36996	4471	21754	21755	44711	44711					0.0794880963428568
RDVLCPSR	8	Unmodified	_RDVLCPSR_					0	0	0			REV__ENST00000479288.5_1_7:23145474-23145636:+|nuORF	REV__ENST00000479288.5_1_7:23145474-23145636:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.21722412109375	2	473.250369	944.486184	-0.019362	-9.163E-06	-1.089	-0.00051539	-1.1084	-0.00052455	473.2497575267142	15.033	0.44097	14.924	14.789	15.23	-0.10982					20	15	3	0	0	0	0.34313	1	950	950		6.7232	0	1	121580	+		36997	21465	21755	21756	44712	44712					0.011720765971176661
RDVMQEIFR	9	Unmodified	_RDVMQEIFR_					0	0	0		ENSG00000277462|ENST00000366503|ZNF670	ENSG00000277462|ENST00000366503|ZNF670	ENSG00000277462|ENST00000366503|ZNF670	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3080444335938	2	597.308415	1192.60228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.973	1	29.973	29.473	30.473	0								0	0	0	0.25858	1	5428	5428		3.5965	0	1				36998	8732	21756	21757	44713	44713					0.01367975377138464
RDVMWPEKGQ	10	Unmodified	_RDVMWPEKGQ_					0	0	0			REV__ENST00000520907.1_1_19:37398825-37406144:-|nuORF	REV__ENST00000520907.1_1_19:37398825-37406144:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.3065795898438	2	623.305872	1244.59719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.423	1	16.361	15.861	16.861	-0.062534								0	0	0	0.38189	1	1322	1322		1.1933	0	1		+		36999	18414	21757	21758	44714	44714					-0.015323284854730446
RDVPQEPLA	9	Unmodified	_RDVPQEPLA_					0	0	0		nc|ENSG00000157890|A6BM72-3|MEGF11	nc|ENSG00000157890|A6BM72-3|MEGF11	nc|ENSG00000157890|A6BM72-3|MEGF11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2940063476562	2	512.774731	1023.53491	0.015358	7.8751E-06	2.0864	0.0010698	2.1017	0.0010777	512.7761722520737	14.56	0.17451	14.56	14.448	14.623	0					12	5	3	0	0	0	0.26188	1	770	770		1.6526	0	1	35697			37000	12779	21758	21759	44715	44715					0.02408268437852712
RDVQDETY	8	Unmodified	_RDVQDETY_					0	0	0		ENST00000543754.1_1_12:132425763-132428128:+|nuORF;nc|ENSG00000177192|Q9Y606-2|PUS1;ENSG00000177192|ENST00000376649|PUS1	ENST00000543754.1_1_12:132425763-132428128:+|nuORF	ENST00000543754.1_1_12:132425763-132428128:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.29248046875	2	513.230353	1024.44615	0.33299	0.0001709	-1.311	-0.00067285	-0.97801	-0.00050195	513.2297514460802	63.165	0.55733	63.165	62.856	63.413	0					33	20	3	0	0	0	0.34185	1	15582	15582		10.183	0	1	223730			37001	6971	21759	21760	44716	44716					-0.06509191592465413
RDVQDETY	8	Unmodified	_RDVQDETY_					0	0	0		ENST00000543754.1_1_12:132425763-132428128:+|nuORF;nc|ENSG00000177192|Q9Y606-2|PUS1;ENSG00000177192|ENST00000376649|PUS1	ENST00000543754.1_1_12:132425763-132428128:+|nuORF	ENST00000543754.1_1_12:132425763-132428128:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2922973632812	2	513.230353	1024.44615	0.31483	0.00016158	-1.1949	-0.00061326	-0.88007	-0.00045168	513.2295497808077	62.977	0.5463	63.073	62.931	63.477	0.095722					26	19	2	0	0	0	0.34185	1	15547	15547		10.183	0	1	254610			37002	6971	21759	21760	44717	44717					-0.06509191592465413
RDWDQMFAF	9	Unmodified	_RDWDQMFAF_					0	0	0		ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.84661865234375	3	405.846569	1214.51788	0.0013937	5.6562E-07	0.41998	0.00017045	0.42138	0.00017101	405.84667251200494	53.321	0.7902	53.377	53.079	53.869	0.056259					103	29	5	0	0	0	0.34374	1	12549	12549		1.1933	1.1933	1	1718500			37003	2342	21760	21761	44718	44718					-0.08079975439613918
RDWFYKRFLKI	11	Unmodified	_RDWFYKRFLKI_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.30859375	3	524.633027	1570.87725	0.40238	0.0002111	-0.78484	-0.00041175	-0.38246	-0.00020065	524.6326607696021	57.323	0.57772	57.305	56.946	57.523	-0.0172					35	20	2	0	0	0	0.33347	1	13828	13828		0.08335	0	1	378870	+		37004	19070	21761	21762	44719	44719					0.1146495584762306
RDWLSDRHW	9	Unmodified	_RDWLSDRHW_					0	0	0			REV__ENST00000511866.6_1_4:16191890-16198306:-|nuORF	REV__ENST00000511866.6_1_4:16191890-16198306:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.2065124511719	3	424.207377	1269.6003	-1.0105	-0.00042866	-0.65522	-0.00027795	-1.6657	-0.00070661	424.2070162263134	34.912	0.76268	34.99	34.704	35.467	0.077377					68	27	3	0	0	0	0.31164	1	6916	6916		7.1017	0.064636	1	740500	+		37005	21813	21762	21763	44720	44720					-0.023713173164196633
RDWSDQID	8	Unmodified	_RDWSDQID_					0	0	0		ENSG00000180245|ENST00000317735|RRH	ENSG00000180245|ENST00000317735|RRH	ENSG00000180245|ENST00000317735|RRH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2562866210938	2	517.73052	1033.44649	0.057173	2.96E-05	1.2493	0.00064679	1.3065	0.00067639	517.7311226241281	46.382	0.30214	46.436	46.355	46.657	0.054371					16	10	2	0	0	0	0.34294	1	10483	10483		7.2892	0	1	196330			37006	7172	21763	21764	44721	44721					-0.06889771872624806
RDYRDLFHRDF	11	Unmodified	_RDYRDLFHRDF_					0	0	0		ENSG00000166479|ENST00000299608|TMX3	ENSG00000166479|ENST00000299608|TMX3	ENSG00000166479|ENST00000299608|TMX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2868041992188	3	513.919896	1538.73786	0.44081	0.00022654	-1.1272	-0.00057932	-0.68644	-0.00035278	514.5876151264969	48.094	0.52189	48.137	48.011	48.533	0.04332					36	19	3	0	0	0	0.33346	1	11073	11073		0.50596	0	1	463050			37007	6084	21764	21765	44722	44722					-0.009960335077039417
REALPMIINII	11	Unmodified	_REALPMIINII_					0	0	0			REV__ENST00000332270.6_1_X:100211671-100211914:+|nuORF	REV__ENST00000332270.6_1_X:100211671-100211914:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3859252929688	2	641.881216	1281.74788	0.56708	0.000364	1.4846	0.00095297	2.0517	0.001317	641.8818305239422	94.612	0.49771	94.61	94.559	95.057	-0.0020142					74	42	2	0	0	0	0.46969	1	25328	25328		2.086	0.43339	1	151090	+		37008	20048	21765	21766	44723	44723					0.11827438173372684
REALSPLQ	8	Unmodified	_REALSPLQ_					0	0	0		ENST00000401651.5_1_7:22766799-22768369:+|nuORF;ENST00000404625.5_1_7:22766799-22767201:+|nuORF	ENST00000401651.5_1_7:22766799-22768369:+|nuORF	ENST00000401651.5_1_7:22766799-22768369:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.9417419433594	2	457.258717	912.50288	0.20132	9.2057E-05	-0.50396	-0.00023044	-0.30263	-0.00013838	457.2584027338951	37.694	0.35252	37.785	37.581	37.934	0.090881					18	12	2	0	0	0	0.34313	1	7826	7826		6.7232	0	1	135210			37009	10191	21766	21767	44724	44724					0.04312900754700877
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8595581054688	2	641.859326	1281.7041	-0.011324	-7.2684E-06	0.066478	4.2669E-05	0.055154	3.5401E-05	641.8597387769483	103.6	1.6101	103.6	103.44	105.05	0					841	226	7	0	0	0	0.44828	5	27696	27696;27758;27788;27821;27848		4.897	0	1	95983000	+		37010	16892	21767	21768	44725;44726;44727;44728;44729	44725					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.85888671875	2	641.859326	1281.7041	-0.018152	-1.1651E-05	0.47823	0.00030696	0.46008	0.00029531	641.8593856885286	105.14	0.146	105.14	105.1	105.25	0					32	20	2	0	0	0	0.44828	1	27879	27879		4.897	0	1	130200	+		37011	16892	21767	21768	44730	44730					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8595581054688	2	641.859326	1281.7041	-0.018678	-1.1989E-05	0.52607	0.00033767	0.5074	0.00032568	641.8595096510724	106.09	0.28491	106.09	105.87	106.15	0					69	40	2	0	0	0	0.44828	1	28061	28061		4.897	0	1	207610	+		37012	16892	21767	21768	44731	44731					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.3619995117188	2	641.859326	1281.7041	-0.017712	-1.1369E-05	0.75213	0.00048276	0.73442	0.00047139	641.8595100704448	112	0.355	112	111.72	112.08	0					65	43	2	0	0	0	0.44828	3	29067	29067;29116;29135		4.897	0	1	95244	+		37013	16892	21767	21768	44732;44733;44734	44732					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8818359375	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.4	1	112.4	111.9	112.9	0								0	0	0	0.36517	1	29219	29219		4.897	0	1		+		37014	16892	21767	21768	44735	44735					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8595581054688	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.11	1	113.11	112.61	113.61	0								0	0	0	0.36517	1	29382	29382		4.897	0	1		+		37015	16892	21767	21768	44736	44736					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8822631835938	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.66	1	119.66	119.16	120.16	0								0	0	0	0.36517	1	30864	30864		4.897	0	1		+		37016	16892	21767	21768	44737	44737					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.881591796875	2	641.859326	1281.7041	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.83	1	119.83	119.33	120.33	0								0	0	0	0.36517	1	30900	30900		4.897	0	1		+		37017	16892	21767	21768	44738	44738					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8817138671875	2	641.859326	1281.7041	-0.017737	-1.1385E-05	0.41762	0.00026805	0.39989	0.00025667	641.8592161175059	118.15	0.13229	118.15	118.1	118.24	0					23	15	2	0	0	0	0.33175	1	30527	30527		4.897	0	1	14594	+		37018	16892	21767	21768	44739	44739					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8826293945312	2	641.859326	1281.7041	-0.018678	-1.1989E-05	0.52607	0.00033767	0.5074	0.00032568	641.8595096510724	106.09	0.28491	106.09	105.87	106.15	0					69	40	2	0	0	0	0.33175	1	28029	28029		4.897	0	1	207610	+		37019	16892	21767	21768	44740	44740					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8599243164062	2	641.859326	1281.7041	-0.017712	-1.1369E-05	0.75213	0.00048276	0.73442	0.00047139	641.8595100704448	112	0.355	112	111.72	112.08	0					65	43	2	0	0	0	0.33175	1	29116	29116		4.897	0	1	95244	+		37020	16892	21767	21768	44741	44741					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8594360351562	2	641.859326	1281.7041	0.24823	0.00015933	0.15197	9.7542E-05	0.4002	0.00025687	641.8595398374342	103.61	1.6	103.62	103.45	105.05	0.0082626					937	227	6	0	0	0	0.44828	4	27671	27671;27783;27808;27832		4.897	0	1	101130000	+		37021	16892	21767	21768	44742;44743;44744;44745	44742					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8595581054688	2	641.859326	1281.7041	0.25016	0.00016057	0.47615	0.00030562	0.72631	0.00046619	641.8594150301719	105.15	0.24265	105.15	105.05	105.29	0.0018463					92	35	4	0	0	0	0.44828	1	27865	27865		4.897	0	1	198450	+		37022	16892	21767	21768	44746	44746					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8580322265625	2	641.859326	1281.7041	0.25586	0.00016422	0.11609	7.4513E-05	0.37195	0.00023874	641.8589531864505	105.48	0.57794	105.47	105.22	105.8	-0.0027771					137	81	2	0	0	0	0.44828	3	27931	27931;27961;28006		4.897	0	1	175240	+		37023	16892	21767	21768	44747;44748;44749	44747					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8596801757812	2	641.859326	1281.7041	0.25599	0.00016431	0.37106	0.00023817	0.62705	0.00040248	641.8592405256775	111.88	0.58041	111.86	111.67	112.25	-0.015625					108	69	2	0	0	0	0.44828	3	29113	29113;29147;29152		4.897	0	1	88979	+		37024	16892	21767	21768	44750;44751;44752	44750					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.36181640625	2	641.859326	1281.7041	0.2538	0.0001629	0.099105	6.3611E-05	0.3529	0.00022651	641.8591180658882	112.92	1.0479	112.9	112.6	113.65	-0.017303					204	127	3	0	0	0	0.44828	4	29339	29339;29369;29418;29449		4.897	0	1	63628	+		37025	16892	21767	21768	44753;44754;44755;44756	44753					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.882080078125	2	641.859326	1281.7041	0.2565	0.00016464	0.17924	0.00011505	0.43574	0.00027968	641.8592393682135	119.35	0.15327	119.33	119.28	119.43	-0.024361					29	18	2	0	0	0	0.44828	1	30836	30836		4.897	0	1	23051	+		37026	16892	21767	21768	44757	44757					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8822631835938	2	641.859326	1281.7041	0.25016	0.00016057	0.47615	0.00030562	0.72631	0.00046619	641.8594150301719	105.15	0.24265	105.15	105.05	105.29	0.0018463					92	35	4	0	0	0	0.33175	1	27879	27879		4.897	0	1	198450	+		37027	16892	21767	21768	44758	44758					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8817749023438	2	641.859326	1281.7041	0.25599	0.00016431	0.37106	0.00023817	0.62705	0.00040248	641.8592405256775	111.88	0.58041	111.86	111.67	112.25	-0.015625					108	69	2	0	0	0	0.33175	1	29102	29102		4.897	0	1	88979	+		37028	16892	21767	21768	44759	44759					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.36181640625	2	641.859326	1281.7041	0.2538	0.0001629	0.099105	6.3611E-05	0.3529	0.00022651	641.8591180658882	112.92	1.0479	112.9	112.6	113.65	-0.017303					204	127	3	0	0	0	0.33175	1	29339	29339		4.897	0	1	63628	+		37029	16892	21767	21768	44760	44760					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8597412109375	2	641.859326	1281.7041	0.42757	0.00027444	0.090982	5.8398E-05	0.51856	0.00033284	641.8589322852266	111.97	0.75581	111.98	111.71	112.47	0.0131					133	91	2	0	0	0	0.44828	2	29095	29095;29215		4.897	0	1	102740	+		37030	16892	21767	21768	44761;44762	44761					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8597412109375	2	641.859326	1281.7041	0.42757	0.00027444	0.090982	5.8398E-05	0.51856	0.00033284	641.8589322852266	111.97	0.75581	111.98	111.71	112.47	0.0131					133	91	2	0	0	0	0.33175	1	29162	29162		4.897	0	1	102740	+		37031	16892	21767	21768	44763	44763					0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	641.859326	1281.7041	-0.018152	-1.1651E-05	0.47823	0.00030696	0.46008	0.00029531	641.8593856885286	105.14	0.146	105.14	105.1	105.25	0	-0.0046002	1.7387E-06	NaN	4.897	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130200	+		37032	16892	21767	21768							0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	641.859326	1281.7041	0.25552	0.00016401	-0.34021	-0.00021837	-0.084686	-5.4357E-05	642.3610833921855	112.39	0.085007	112.38	112.34	112.43	-0.015625	0.1917	-0.0012745	NaN	4.897	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24827	+		37033	16892	21767	21768							0.07451545000571969
REASHSLLEKL	11	Unmodified	_REASHSLLEKL_					0	0	0			REV__nc|ENSG00000160293|P52735-3|VAV2	REV__nc|ENSG00000160293|P52735-3|VAV2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	641.859326	1281.7041	0.42717	0.00027418	0.06862	4.4045E-05	0.49579	0.00031823	641.8589435323861	106.21	0.10889	106.21	106.19	106.3	0.0031738	0.062338	-0.00044542	NaN	4.897	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277140	+		37034	16892	21767	21768							0.07451545000571969
RECYKKILEI	10	Unmodified	_RECYKKILEI_					0	0	0		nc|ENSG00000149292|Q9H892-2|TTC12;ENST00000534793.1_1_11:113205756-113210225:+|nuORF;ENSG00000149292|ENST00000529221|TTC12	nc|ENSG00000149292|Q9H892-2|TTC12	nc|ENSG00000149292|Q9H892-2|TTC12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.8635864257812	2	647.863023	1293.71149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.99	1	102.99	102.49	103.49	0								0	0	0	0.37157	1	27374	27374		5.7319	0.43497	1				37035	12752	21768	21769	44764	44764					0.07638561276644396
RECYKKILEI	10	Unmodified	_RECYKKILEI_					0	0	0		nc|ENSG00000149292|Q9H892-2|TTC12;ENST00000534793.1_1_11:113205756-113210225:+|nuORF;ENSG00000149292|ENST00000529221|TTC12	nc|ENSG00000149292|Q9H892-2|TTC12	nc|ENSG00000149292|Q9H892-2|TTC12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.8643798828125	2	647.863023	1293.71149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.24	1	103.25	102.75	103.75	0.0082703								0	0	0	0.37157	1	27446	27446		5.7319	0.43497	1				37036	12752	21768	21769	44765	44765					0.07638561276644396
RECYKKILEI	10	Unmodified	_RECYKKILEI_					0	0	0		nc|ENSG00000149292|Q9H892-2|TTC12;ENST00000534793.1_1_11:113205756-113210225:+|nuORF;ENSG00000149292|ENST00000529221|TTC12	nc|ENSG00000149292|Q9H892-2|TTC12	nc|ENSG00000149292|Q9H892-2|TTC12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.8638305664062	2	647.863023	1293.71149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.25	1	104.25	103.75	104.75	0.0011444								0	0	0	0.37807	1	27711	27711		2.9952	0.26005	1				37037	12752	21768	21769	44766	44766					0.07638561276644396
REDLELYYKK	10	Unmodified	_REDLELYYKK_					0	0	0		ENSG00000122432|ENST00000699524|SPATA1;nc|ENSG00000122432|Q5VX52|SPATA1	ENSG00000122432|ENST00000699524|SPATA1	ENSG00000122432|ENST00000699524|SPATA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.9097595214844	3	452.910115	1355.70852	-0.0782	-3.5418E-05	-0.098102	-4.4432E-05	-0.1763	-7.9849E-05	452.91020901375634	18.239	0.63882	18.181	17.819	18.458	-0.058174					51	22	3	0	0	0	0.40756	1	1854	1854		2.086	0.63089	1	120180			37038	3042	21769	21770	44767	44767					0.0448900942342334
REDLELYYKK	10	Unmodified	_REDLELYYKK_					0	0	0		ENSG00000122432|ENST00000699524|SPATA1;nc|ENSG00000122432|Q5VX52|SPATA1	ENSG00000122432|ENST00000699524|SPATA1	ENSG00000122432|ENST00000699524|SPATA1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	452.910115	1355.70852	0.06452	2.9222E-05	0.016608	7.5217E-06	0.081127	3.6743E-05	452.9102574445681	17.998	0.61229	17.998	17.719	18.332	0	-0.09232	-5.8024E-05	NaN	2.086	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96156			37039	3042	21769	21770							0.0448900942342334
REDLELYYKK	10	Unmodified	_REDLELYYKK_					0	0	0		ENSG00000122432|ENST00000699524|SPATA1;nc|ENSG00000122432|Q5VX52|SPATA1	ENSG00000122432|ENST00000699524|SPATA1	ENSG00000122432|ENST00000699524|SPATA1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	452.910115	1355.70852	-0.0782	-3.5418E-05	-0.098102	-4.4432E-05	-0.1763	-7.9849E-05	452.91020901375634	18.239	0.63882	18.181	17.819	18.458	-0.058174	0.090697	-0.00021388	NaN	2.086	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120180			37040	3042	21769	21770							0.0448900942342334
REEATQRRWKT	11	Unmodified	_REEATQRRWKT_					0	0	0			REV__ENSG00000115297|ENST00000233638|TLX2	REV__ENSG00000115297|ENST00000233638|TLX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7850646972656	3	487.595413	1459.76441	0.56398	0.00027499	1.3426	0.00065465	1.9066	0.00092964	487.5962745862627	20.717	0.31856	20.607	20.435	20.753	-0.11003					13	10	2	0	0	0	0.33334	1	2618	2618		1.2148	0	1	62571	+		37041	14872	21770	21771	44768	44768					0.05291655383643956
REEELKKRTRF	11	Unmodified	_REEELKKRTRF_					0	0	0			REV__nc|ENSG00000168066|Q15637-4|SF1	REV__nc|ENSG00000168066|Q15637-4|SF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3147888183594	3	497.951196	1490.83176	0.24158	0.0001203	-0.030809	-1.5341E-05	0.21077	0.00010495	497.9510623228856	18.424	0.68766	18.424	18.051	18.738	0					53	23	3	0	0	0	0.33352	1	1848	1848		0	0	1	116820	+		37042	17436	21771	21772	44769	44769					0.10597685594575523
REEGSGSGTW	10	Unmodified	_REEGSGSGTW_					0	0	0		nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-4|HSPH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.234130859375	2	533.233427	1064.4523	0.63832	0.00034037	1.4774	0.00078781	2.1157	0.0011282	533.2340114390321	91.894	0.79607	91.894	91.636	92.433	0.00047302					106	51	5	0	0	0	0.40106	1	24408	24408		3.2813	0.39209	1	401260			37043	12680	21772	21773	44770	44770					-0.0773467336093745
REEQAWVM	8	Unmodified	_REEQAWVM_					0	0	0			REV__ENST00000272321.11_2_2:63815801-63815882:-|nuORF	REV__ENST00000272321.11_2_2:63815801-63815882:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.816162109375	2	524.747659	1047.48076	0.25979	0.00013632	0.18954	9.9459E-05	0.44933	0.00023578	524.7475545874921	15.969	0.47445	15.854	15.635	16.11	-0.11434					21	15	2	0	0	0	0.34434	1	1199	1199		0.79363	0	1	54649	+		37044	19679	21773	21774	44771	44771					-0.041076469853805975
REFILTANP	9	Unmodified	_REFILTANP_					0	0	0			REV__ENST00000400943.3_1_1:240136137-240136869:+|nuORF	REV__ENST00000400943.3_1_1:240136137-240136869:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2555541992188	2	530.792924	1059.57129	0.5468	0.00029024	-0.7853	-0.00041683	-0.2385	-0.00012659	530.7926064137437	21.353	0.45586	21.304	21.092	21.548	-0.049377					24	15	2	0	0	0	0.25123	1	2827	2827		12.241	0.74595	1	84257	+		37045	20705	21774	21775	44772	44772					0.04389145334562272
REFQTYIR	8	Unmodified	_REFQTYIR_					0	0	0		ENST00000543938.5_1_15:83328314-83349061:-|nuORF;nc|ENSG00000103723|Q13367-3|AP3B2;nc|ENSG00000103723|Q13367|AP3B2;ENSG00000103723|ENST00000535359|AP3B2	ENST00000543938.5_1_15:83328314-83349061:-|nuORF	ENST00000543938.5_1_15:83328314-83349061:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7739868164062	2	556.795998	1111.57744	0.12021	6.6933E-05	-4.3583	-0.0024267	-4.2381	-0.0023597	556.7928359748923	26	0.46389	25.978	25.579	26.043	-0.022238					24	16	3	0	0	0	0.3408	1	4237	4237		14.838	1.7958	1	107350			37046	1850	21775	21776	44773	44773					0.026116635660628162
REFSSRNFGV	10	Unmodified	_REFSSRNFGV_					0	0	0		nc|ENSG00000119703|Q53FD0-2|ZC2HC1C;ENSG00000119703|ENST00000524913|ZC2HC1C	nc|ENSG00000119703|Q53FD0-2|ZC2HC1C	nc|ENSG00000119703|Q53FD0-2|ZC2HC1C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	400.2030029296875	3	400.203633	1197.58907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.4	1	91.4	90.9	91.9	0								0	0	0	0.37789	1	24269	24269		3.0723	0	1				37047	2901	21776	21777	44774	44774					-0.0018213941059457284
REGDLVRQLCA	11	Unmodified	_REGDLVRQLCA_					0	0	0			REV__ENST00000375353.4_1_13:114519008-114519242:+|nuORF	REV__ENST00000375353.4_1_13:114519008-114519242:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8596801757812	2	630.329879	1258.6452	0.54961	0.00034644	-0.55784	-0.00035162	-0.0082278	-5.1862E-06	630.3292983298542	85.789	1.8404	85.789	85.098	86.938	0					180	71	3	0	0	0	0.32697	1	22864	22864		13.615	5.4593	1	608840	+		37048	20475	21777	21778	44775	44775					0.026227454346098966
REGDLVRQLCA	11	Unmodified	_REGDLVRQLCA_					0	0	0			REV__ENST00000375353.4_1_13:114519008-114519242:+|nuORF	REV__ENST00000375353.4_1_13:114519008-114519242:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.8599243164062	2	630.329879	1258.6452	0.53134	0.00033492	-0.28294	-0.00017834	0.2484	0.00015657	630.3295184789757	85.675	2.0165	85.666	84.945	86.962	-0.0090027					182	78	3	0	0	0	0.32697	1	22846	22846		13.615	5.4593	1	429650	+		37049	20475	21777	21778	44776	44776					0.026227454346098966
REGSFAVAK	9	Unmodified	_REGSFAVAK_					0	0	0			REV__ENST00000330914.7_1_6:30689353-30689635:+|nuORF	REV__ENST00000330914.7_1_6:30689353-30689635:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.25604248046875	2	482.764166	963.513779	0.020903	1.0091E-05	-0.11592	-5.596E-05	-0.095013	-4.5869E-05	482.76414331000086	18.783	1.0762	18.783	18.299	19.375	0					84	37	4	0	0	0	0.19905	1	2086	2086		23.79	2.0431	1	397270	+		37050	20040	21778	21779	44777	44777					0.030563031289943865
REGSFAVAK	9	Unmodified	_REGSFAVAK_					0	0	0			REV__ENST00000330914.7_1_6:30689353-30689635:+|nuORF	REV__ENST00000330914.7_1_6:30689353-30689635:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.76397705078125	2	482.764166	963.513779	0.057269	2.7647E-05	-0.40933	-0.00019761	-0.35206	-0.00016996	482.76397201513424	18.94	1.0423	18.822	18.267	19.309	-0.11739					100	36	5	0	0	0	0.14786	2	2103	2103;2131		31.268	6.2774	1	436340	+		37051	20040	21778	21779	44778;44779	44778					0.030563031289943865
REGSFAVAK	9	Unmodified	_REGSFAVAK_					0	0	0			REV__ENST00000330914.7_1_6:30689353-30689635:+|nuORF	REV__ENST00000330914.7_1_6:30689353-30689635:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.76385498046875	2	482.764166	963.513779	-9.2835E-05	-4.4817E-08	-0.27637	-0.00013342	-0.27646	-0.00013347	482.7640392358482	18.885	0.9347	18.826	18.458	19.393	-0.058172					107	32	5	0	0	0	0.09758	3	2104	2104;2113;2169		38.615	10.12	1	464910	+		37052	20040	21778	21779	44780;44781;44782	44780					0.030563031289943865
REGTHGHQHLI	11	Unmodified	_REGTHGHQHLI_					0	0	0			REV__ENSG00000204514|ENST00000435989|ZNF814	REV__ENSG00000204514|ENST00000435989|ZNF814	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.8893737792969	3	428.890048	1283.64832	0.022928	9.8335E-06	-1.1464	-0.00049167	-1.1234	-0.00048184	428.88991393140225	34.037	3.2411	34.037	33.091	36.332	0					219	117	4	0	0	0	0.26921	1	6657	6657		15.538	1.3203	1	1410400	+		37053	18948	21779	21780	44783	44783					0.017837566036405406
REHFRQLLD	9	Unmodified	_REHFRQLLD_					0	0	0		nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1;ENST00000506524.5_1_5:145862104-145889630:+|nuORF;ENST00000503741.5_1_5:145883557-145887476:+|nuORF;ENST00000514719.1_1_5:145883057-145886815:+|nuORF	nc|ENSG00000113649|O14776-2|TCERG1	nc|ENSG00000113649|O14776-2|TCERG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.3253784179688	2	607.325454	1212.63635	0.15277	9.2779E-05	0.092767	5.634E-05	0.24553	0.00014912	607.325362901198	27.716	0.71358	27.716	27.408	28.121	0					61	24	4	0	0	0	0.34243	1	4712	4712		0.45834	0	1	453220			37054	2521	21780	21781	44784	44784					0.03854139860413852
REHHRKQL	8	Unmodified	_REHHRKQL_					0	0	0		nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB;ENST00000571632.5_1_17:7838298-7849136:+|nuORF;ENST00000576723.5_1_17:7843028-7852016:+|nuORF;nc|ENSG00000170037|Q8N137-4|CNTROB;ENST00000576922.5_1_17:7840526-7847657:+|nuORF	nc|ENSG00000170037|Q8N137-5|CNTROB	nc|ENSG00000170037|Q8N137-5|CNTROB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2793579101562	2	552.312681	1102.61081	0.2181	0.00012046	-0.70547	-0.00038964	-0.48737	-0.00026918	552.3124718789579	26.163	0.33244	26.124	25.931	26.263	-0.038671					21	11	2	0	0	0	0.34414	1	4309	4309		2.0598	1.535	1	76790			37055	6419	21781	21782	44785	44785					0.06360710128637947
REHMKRHTL	9	Unmodified	_REHMKRHTL_					0	0	0		ENSG00000130584|ENST00000245663|ZBTB46	ENSG00000130584|ENST00000245663|ZBTB46	ENSG00000130584|ENST00000245663|ZBTB46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.5693359375	3	403.220741	1206.64039	-0.36318	-0.00014644	2.3963	0.00096622	2.0331	0.00081978	403.2220812784007	17.87	0.49315	17.753	17.545	18.038	-0.11739					35	16	3	0	0	0	0.30824	1	1782	1782		7.609	2.2062	1	75674			37056	3488	21782	21783	44786	44786					0.045339060824971966
REIELLHEPL	10	Unmodified	_REIELLHEPL_					0	0	0			REV__ENST00000340892.9_1_14:92268729-92278661:-|nuORF	REV__ENST00000340892.9_1_14:92268729-92278661:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.8508911132812	2	624.85097	1247.68739	0.0087019	5.4374E-06	0.24116	0.00015069	0.24986	0.00015612	624.8510193083096	18	0.63306	17.94	17.65	18.283	-0.06007					54	22	4	0	0	0	0.41673	1	1879	1879		0.40072	0	1	139610	+		37057	20112	21783	21784	44787	44787					0.07345044114640586
REIIKLTMKF	10	Unmodified	_REIIKLTMKF_					0	0	0		ENSG00000107551|ENST00000340258|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF;nc|ENSG00000107551|Q9H2L5-3|RASSF4;nc|ENSG00000107551|Q9H2L5-2|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	639.8843383789062	2	639.883758	1277.75296	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.26	1	112.27	111.77	112.77	0.0131								0	0	0	0.38166	1	29222	29222		1.4819	0	1				37058	2131	21784	21785	44788	44788					0.12519742035942727
REKDEQSL	8	Unmodified	_REKDEQSL_					0	0	0			REV__ENST00000549192.5_1_12:95650374-95690042:+|nuORF	REV__ENST00000549192.5_1_12:95650374-95690042:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7940368652344	2	502.753995	1003.49344	0.14375	7.2269E-05	-0.5378	-0.00027038	-0.39405	-0.00019811	502.75354171062355	18.705	0.55829	18.587	18.387	18.946	-0.11739					32	19	2	0	0	0	0.33988	1	2042	2042		18.146	1.9972	1	78628	+		37059	13488	21785	21786	44789	44789					-0.00816912321477048
REKFFVIFSA	10	Unmodified	_REKFFVIFSA_					0	0	0		ENST00000266732.8_2_12:98926892-98926928:+|nuORF	ENST00000266732.8_2_12:98926892-98926928:+|nuORF	ENST00000266732.8_2_12:98926892-98926928:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.34765625	2	622.345323	1242.67609	0.21128	0.00013149	3.1225	0.0019433	3.3338	0.0020748	622.3469479021986	83.094	0.42627	83.167	82.844	83.27	0.07309					27	15	3	0	0	0	0.40106	1	21740	21740		3.2813	0	1	153010			37060	9060	21786	21787	44790	44790					0.06446266811144596
REKKPVGRPQ	10	Unmodified	_REKKPVGRPQ_					0	0	0			REV__nc|ENSG00000140265|Q8IWY8-4|ZSCAN29	REV__nc|ENSG00000140265|Q8IWY8-4|ZSCAN29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3587036132812	2	597.856921	1193.69929	0.35742	0.00021369	-0.52647	-0.00031475	-0.16905	-0.00010107	597.856510583953	98.626	0.56506	98.619	98.467	99.032	-0.0069046					96	65	2	0	0	0	0.41168	1	26457	26457		1.3295	0.13619	1	141720	+		37061	16023	21787	21788	44791	44791					0.11018705648461946
REKLEITI	8	Unmodified	_REKLEITI_					0	0	0			REV__ENST00000368072.9_1_1:160248755-160248893:-|nuORF	REV__ENST00000368072.9_1_1:160248755-160248893:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.290771484375	2	501.303124	1000.5917	0.79333	0.0003977	-0.35042	-0.00017567	0.44291	0.00022203	501.3029198660056	78.463	0.71011	78.432	78.034	78.744	-0.030434					40	26	2	0	0	0	0.4396	1	20245	20245		9.3831	0	1	105210	+		37062	20327	21788	21789	44792	44792					0.09142315994370165
REKPRELIF	9	Unmodified	_REKPRELIF_					0	0	0		MED12L|p.Q2074Sfs*63|1|0.33|ENSG00000144893|chr3:151416336-151416336|C/-|frameshift_variant;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L;nc|ENSG00000144893|Q86YW9-2|MED12L;nc|ENSG00000144893|Q86YW9-3|MED12L	MED12L|p.Q2074Sfs*63|1|0.33|ENSG00000144893|chr3:151416336-151416336|C/-|frameshift_variant	MED12L|p.Q2074Sfs*63|1|0.33|ENSG00000144893|chr3:151416336-151416336|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2662353515625	2	594.348397	1186.68224	0.55221	0.00032821	3.4285	0.0020377	3.9807	0.0023659	594.8517230204116	72.809	0.46745	72.779	72.542	73.009	-0.029305					32	16	3	0	0	0	0.23749	1	18543	18543		20.415	3.4722	1	138030			37063	12524	21789	21790	44793	44793					0.09636785042653173
RELAEDSRR	9	Unmodified	_RELAEDSRR_					0	0	0			REV__ENSG00000179071|ENST00000316398|CCDC89	REV__ENSG00000179071|ENST00000316398|CCDC89	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.7837524414062	2	566.296893	1130.57923	-0.1803	-0.00010211	0.24755	0.00014018	0.067243	3.8079E-05	566.7965937852631	12.4	0.15092	12.332	12.226	12.377	-0.06806					6	4	2	0	0	0	0.25431	1	89	89		9.3831	0	1	6581.7	+		37064	18060	21790	21791	44794	44794					0.019166725840250365
RELIDNWEK	9	Unmodified	_RELIDNWEK_					0	0	0			REV__ENST00000265085.9_1_5:173371996-173372116:+|nuORF	REV__ENST00000265085.9_1_5:173371996-173372116:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.2891845703125	2	601.811845	1201.60914	0.38911	0.00023417	1.9811	0.0011922	2.3702	0.0014264	601.8130835991394	46.21	0.59449	46.27	46.015	46.61	0.059834					31	21	2	0	0	0	0.22674	1	10402	10402		22.736	0	1	695530	+		37065	19647	21791	21792	44795	44795					0.016396115293673574
RELKKKWME	9	Unmodified	_RELKKKWME_					0	0	0		nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1	nc|ENSG00000141968|P15498-2|VAV1	nc|ENSG00000141968|P15498-2|VAV1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.5694885253906	3	416.569147	1246.68561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.28	1	103.29	102.79	103.79	0.0082703								0	0	0	0.264	1	27454	27454		0.96228	0	1				37066	4416	21792	21793	44796	44796					0.07213711824988422
RELKKKWME	9	Unmodified	_RELKKKWME_					0	0	0		nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1	nc|ENSG00000141968|P15498-2|VAV1	nc|ENSG00000141968|P15498-2|VAV1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.5693664550781	3	416.569147	1246.68561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.88	1	103.88	103.38	104.38	-0.0011139								0	0	0	0.264	1	27617	27617		0.96228	0	1				37067	4416	21792	21793	44797	44797					0.07213711824988422
RELKSEKK	8	Unmodified	_RELKSEKK_					0	0	0			REV__ENSG00000035928|ENST00000349703|RFC1	REV__ENSG00000035928|ENST00000349703|RFC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.76776123046875	2	509.306198	1016.59784	-0.0095994	-4.8891E-06	-0.91647	-0.00046676	-0.92607	-0.00047165	509.3062405125879	13.614	0.31301	13.614	13.427	13.74	0					14	10	2	0	0	0	0.34388	1	473	473		3.5965	0	1	36366	+		37068	13507	21793	21794	44798	44798					0.09020834225896124
RELSLQAQLMT	11	Unmodified	_RELSLQAQLMT_					0	0	0			REV__ENSG00000140743|ENST00000268383|CDR2	REV__ENSG00000140743|ENST00000268383|CDR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	644.8621826171875	2	645.347737	1288.68092	0.47737	0.00030807	0.82081	0.00052971	1.2982	0.00083777	645.3478877084146	87.973	0.55872	87.97	87.823	88.382	-0.0028381					47	28	2	0	0	0	0.32855	1	23189	23189		7.1017	1.8048	1	143920	+		37069	16048	21794	21795	44799	44799					0.04812782891576717
RELSLQAQLMT	11	Unmodified	_RELSLQAQLMT_					0	0	0			REV__ENSG00000140743|ENST00000268383|CDR2	REV__ENSG00000140743|ENST00000268383|CDR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	645.347737	1288.68092	0.57508	0.00037113	0.83876	0.00054129	1.4138	0.00091242	645.3480184745817	88.03	0.76428	88.03	87.781	88.545	0	0.029772	1.6415E-05	NaN	7.1017	48	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150750	+		37070	16048	21794	21795							0.04812782891576717
REMRVHCK	8	Unmodified	_REMRVHCK_					0	0	0		ENST00000457422.6_1_17:42755944-42756196:-|nuORF	ENST00000457422.6_1_17:42755944-42756196:-|nuORF	ENST00000457422.6_1_17:42755944-42756196:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.7613525390625	2	529.770945	1057.52734	0.19013	0.00010073	-0.019218	-1.0181E-05	0.17091	9.0544E-05	529.7707770606382	25.238	0.56775	25.182	24.946	25.514	-0.055929					42	19	3	0	0	0	0.4354	1	4015	4015		10.824	0.75	1	366910			37071	10705	21795	21796	44800	44800					0.0008751436494094378
RENDSNSFLI	10	Unmodified	_RENDSNSFLI_					0	0	0			REV__nc|ENSG00000077097|Q02880-2|TOP2B;REV__nc|ENSG00000131747|P11388-4|TOP2A	REV__nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.7926025390625	2	597.791109	1193.56767	0.54375	0.00032505	0.94263	0.00056349	1.4864	0.00088854	597.7915893339768	74.142	1.7367	74.142	73.441	75.178	0					109	60	2	0	0	0	0.19885	1	18998	18998		32.786	10.049	1	736640	+		37072	13837;22987	21796	21797	44801	44801					-0.02137569229944347
RENDSNSFLI	10	Unmodified	_RENDSNSFLI_					0	0	0			REV__nc|ENSG00000077097|Q02880-2|TOP2B;REV__nc|ENSG00000131747|P11388-4|TOP2A	REV__nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.7621459960938	2	597.791109	1193.56767	0.54375	0.00032505	0.94263	0.00056349	1.4864	0.00088854	597.7915893339768	74.142	1.7367	74.142	73.441	75.178	0					109	60	2	0	0	0	0.23542	1	18960	18960		39.95	17.213	1	736640	+		37073	13837;22987	21796	21797	44802	44802					-0.02137569229944347
RENDSNSFLI	10	Unmodified	_RENDSNSFLI_					0	0	0			REV__nc|ENSG00000077097|Q02880-2|TOP2B;REV__nc|ENSG00000131747|P11388-4|TOP2A	REV__nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.7623291015625	2	597.791109	1193.56767	0.43759	0.00026159	1.108	0.00066238	1.5456	0.00092397	597.7917639934004	74.074	1.9335	74.126	73.142	75.076	0.052368					106	68	2	0	0	0	0.255	1	18918	18918		34.402	34.402	1	806560	+		37074	13837;22987	21796	21797	44803	44803					-0.02137569229944347
RENDSNSFLI	10	Unmodified	_RENDSNSFLI_					0	0	0			REV__nc|ENSG00000077097|Q02880-2|TOP2B;REV__nc|ENSG00000131747|P11388-4|TOP2A	REV__nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.7623291015625	2	597.791109	1193.56767	0.45536	0.00027221	1.1737	0.00070165	1.6291	0.00097386	597.7917906790072	74.191	1.5858	74.16	73.474	75.06	-0.030655					105	56	2	0	0	0	0.24359	1	18965	18965		38.176	22.328	1	795010	+		37075	13837;22987	21796	21797	44804	44804					-0.02137569229944347
RENLLNQANK	10	Unmodified	_RENLLNQANK_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3285522460938	2	600.328193	1198.64183	0.19027	0.00011422	0.7863	0.00047204	0.97657	0.00058627	600.3287279259961	12.848	0.28307	12.749	12.611	12.894	-0.099291					23	9	3	0	0	0	0.38515	1	249	249		6.2058	0.47393	1	101860	+		37076	23129	21797	21798	44805	44805					0.050458186522291726
RENLLNQANK	10	Unmodified	_RENLLNQANK_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	600.328193	1198.64183	0.19027	0.00011422	0.7863	0.00047204	0.97657	0.00058627	600.3287279259961	12.848	0.28307	12.749	12.611	12.894	-0.099291	-0.021809	-0.00028395	NaN	6.2058	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101860	+		37077	23129	21797	21798							0.050458186522291726
RENLLNQANK	10	Unmodified	_RENLLNQANK_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	600.328193	1198.64183	-0.050293	-3.0193E-05	1.0741	0.00064481	1.0238	0.00061461	600.3287786439705	12.827	0.2642	12.76	12.64	12.905	-0.067495	-0.011062	6.1577E-05	NaN	6.2058	22	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101900	+		37078	23129	21797	21798							0.050458186522291726
RENQKILT	8	Unmodified	_RENQKILT_					0	0	0		ENST00000576239.5_1_17:663415-673427:-|nuORF;ENSG00000167699|ENST00000301329|GLOD4;nc|ENSG00000167699|Q9HC38|GLOD4	ENST00000576239.5_1_17:663415-673427:-|nuORF	ENST00000576239.5_1_17:663415-673427:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2906188964844	2	501.290548	1000.56654	0.41719	0.00020913	-0.20319	-0.00010186	0.214	0.00010727	501.2903398118738	88.66	1.7529	88.749	87.832	89.585	0.089203					134	86	3	0	0	0	0.44389	1	23490	23490		7.9102	0.62092	1	407800			37079	6199	21798	21799	44806	44806					0.06628261191792717
RENQVVVKYFD	11	Unmodified	_RENQVVVKYFD_					0	0	0			REV__nc|ENSG00000100150|O75140-2|DEPDC5	REV__nc|ENSG00000100150|O75140-2|DEPDC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.60821533203125	3	466.245498	1395.71466	0.31015	0.00014461	-0.086358	-4.0264E-05	0.2238	0.00010434	466.24529946523194	89.717	0.3633	89.716	89.621	89.984	-0.00080872					58	34	3	0	0	0	0.3325	1	23809	23809		2.2527	0	1	128300	+		37080	14165	21799	21800	44807	44807					0.03263527655008147
RENVEWPC	8	Unmodified	_RENVEWPC_					0	0	0			REV__GPR179|p.V2023Sfs*85|1|0.29|ENSG00000277399|chr17:38327490-38327502|TTCTTTCAGTCAC/-|frameshift_variant	REV__GPR179|p.V2023Sfs*85|1|0.29|ENSG00000277399|chr17:38327490-38327502|TTCTTTCAGTCAC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2484741210938	2	516.732009	1031.44946	-0.079691	-4.1179E-05	1.86	0.00096113	1.7803	0.00091995	516.7327673799349	14.536	0.21603	14.47	14.4	14.616	-0.066068					12	7	2	0	0	0	0.34408	1	748	748		2.3027	0	1	25006	+		37081	19343	21800	21801	44808	44808					-0.0650022001943853
REPCVLPFQL	10	Unmodified	_REPCVLPFQL_					0	0	0		ENSG00000113212|ENST00000231137|PCDHB7	ENSG00000113212|ENST00000231137|PCDHB7	ENSG00000113212|ENST00000231137|PCDHB7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	401.2170715332031	3	401.218115	1200.63251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.95	1	90.95	90.45	91.45	0								0	0	0	0.37157	1	24130	24130		3.0723	1.33	1				37082	2480	21801	21802	44809	44809					0.04022334042338116
REPGCSMRD	9	Unmodified	_REPGCSMRD_					0	0	0		ENST00000574894.1_1_16:16367711-16371421:+|nuORF	ENST00000574894.1_1_16:16367711-16371421:+|nuORF	ENST00000574894.1_1_16:16367711-16371421:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3656616210938	2	525.7264	1049.43825	0.54876	0.0002885	-0.047552	-2.4999E-05	0.50121	0.0002635	525.7262818849665	79.838	0.43419	79.809	79.598	80.032	-0.028931					22	15	2	0	0	0	0.25706	1	20743	20743		6.7232	1.4925	1	94558			37083	12041	21802	21803	44810	44810					-0.08449365385217789
REPGKKKEKL	10	Unmodified	_REPGKKKEKL_					0	0	0			REV__PRR12|p.N831Mfs*8|1|0.28|ENSG00000126464|chr19:49614937-49614937|A/-|frameshift_variant	REV__PRR12|p.N831Mfs*8|1|0.28|ENSG00000126464|chr19:49614937-49614937|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8724975585938	2	606.874779	1211.73501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.23	1	115.25	114.75	115.75	0.018738								0	0	0	0.38203	1	29940	29940		0.35063	0.043601	1		+		37084	15311	21803	21804	44811	44811					0.13760743105467554
REPLAEIRAL	10	Unmodified	_REPLAEIRAL_					0	0	0		ENSG00000183196|ENST00000332272|CHST6;ENSG00000135702|ENST00000336257|CHST5;nc|ENSG00000135702|Q9GZS9-2|CHST5	ENSG00000183196|ENST00000332272|CHST6;ENSG00000135702|ENST00000336257|CHST5	ENSG00000135702|ENST00000336257|CHST5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.0137939453125	2	584.345855	1166.67716	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.99	1	102.99	102.49	103.49	0								0	0	0	0.37807	1	27371	27371		2.9952	0	1				37085	7350;3897	21804	21805	44812	44812					0.10048481180024282
REPQLMSV	8	Unmodified	_REPQLMSV_					0	0	0		ENST00000467716.1_1_7:7222357-7249086:+|nuORF	ENST00000467716.1_1_7:7222357-7249086:+|nuORF	ENST00000467716.1_1_7:7222357-7249086:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7439880371094	2	480.252577	958.490601	0.11244	5.3999E-05	-3.599	-0.0017284	-3.4865	-0.0016744	480.2504457710701	17.732	0.45423	17.732	17.537	17.991	0					23	14	2	0	0	0	0.45431	1	1730	1730		4.3292	0.73274	1	26340			37086	10829	21805	21806	44813	44813					0.009695410200151855
REPQLMSV	8	Unmodified	_REPQLMSV_					0	0	0		ENST00000467716.1_1_7:7222357-7249086:+|nuORF	ENST00000467716.1_1_7:7222357-7249086:+|nuORF	ENST00000467716.1_1_7:7222357-7249086:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7444763183594	2	480.252577	958.490601	0.0936	4.4951E-05	-3.2746	-0.0015726	-3.181	-0.0015277	480.2506702779688	17.908	0.46443	17.848	17.704	18.169	-0.060429					24	16	2	0	0	0	0.45431	1	1769	1769		4.3292	2.0265	1	48042			37087	10829	21805	21806	44814	44814					0.009695410200151855
REPQRSLT	8	Unmodified	_REPQRSLT_					0	0	0			REV__ENST00000462906.1_1_3:195256593-195269923:-|nuORF	REV__ENST00000462906.1_1_3:195256593-195269923:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.77276611328125	2	493.772522	985.530492	0.081557	4.0271E-05	1.0242	0.00050571	1.1057	0.00054598	493.7726337986942	14.413	0.53953	14.413	14.249	14.789	0					34	18	2	0	0	0	0.42642	1	713	713		13.906	1.6654	1	421670	+		37088	21240	21806	21807	44815	44815					0.03714804014953188
REPREEPGSPL	11	Unmodified	_REPREEPGSPL_					0	0	0		ENSG00000170846|ENST00000635031|unknown;ENST00000307533.10_1_4:6675831-6676296:+|nuORF	ENSG00000170846|ENST00000635031|unknown	ENSG00000170846|ENST00000635031|unknown	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.8256225585938	2	633.825483	1265.63641	0.1979	0.00012543	-0.3725	-0.0002361	-0.1746	-0.00011067	633.8252017333397	100.13	0.68082	100.17	99.768	100.45	0.038994					196	89	3	0	0	0	0.46277	1	26825	26825		2.9952	0	1	243740			37089	6484	21807	21808	44816	44816					0.01422095069756324
REQAEEWLK	9	Unmodified	_REQAEEWLK_					0	0	0		nc|ENSG00000157510|Q8TED9-3|AFAP1L1;ENST00000455574.6_1_5:148651531-148691878:+|nuORF;nc|ENSG00000157510|Q8TED9-2|AFAP1L1;ENSG00000157510|ENST00000296721|AFAP1L1	nc|ENSG00000157510|Q8TED9-3|AFAP1L1	nc|ENSG00000157510|Q8TED9-3|AFAP1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8031005859375	2	594.80402	1187.59349	-0.13235	-7.8723E-05	-1.7419	-0.0010361	-1.8742	-0.0011148	594.8031629026569	34.427	0.50335	34.427	34.193	34.697	0					33	17	3	0	0	0	0.34809	1	6795	6795		1.6526	0	1	270900			37090	5311	21808	21809	44817	44817					0.007193250123236794
REQLFVRKLT	10	Unmodified	_REQLFVRKLT_					0	0	0			REV__ENST00000476258.5_1_17:73131469-73131559:-|nuORF	REV__ENST00000476258.5_1_17:73131469-73131559:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	645.3290405273438	2	645.388054	1288.76155	-0.38161	-0.00024629	0.066748	4.3078E-05	-0.31486	-0.00020321	645.3880006518996	35.193	0.41152	35.193	35	35.412	0					35	14	3	0	0	0	0.32067	1	7074	7074		7.1017	0	1	254820	+		37091	21418	21809	21810	44818	44818					0.1287243199678869
REQRPGSKLSL	11	Unmodified	_REQRPGSKLSL_					0	0	0			REV__ENSG00000179627|ENST00000342537|ZBTB42	REV__ENSG00000179627|ENST00000342537|ZBTB42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.24560546875	3	424.245721	1269.71533	-0.17014	-7.2181E-05	0.14689	6.2317E-05	-0.023252	-9.8644E-06	424.2458012300494	27.223	0.43839	27.223	27.035	27.474	0					26	14	2	0	0	0	0.36257	1	4615	4615		9.2438	0	1	166850	+		37092	18085	21810	21811	44819	44819					0.09126367094722809
REQRSYVDLL	10	Unmodified	_REQRSYVDLL_					0	0	0		ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	639.8442993164062	2	639.843676	1277.6728	0.33906	0.00021694	-0.15787	-0.00010101	0.18118	0.00011593	639.8437105149088	91.805	0.4585	91.805	91.597	92.056	0					62	28	3	0	0	0	0.38515	1	24364	24364		6.2058	0.47393	1	400040			37093	3399	21811	21812	44820	44820					0.04506971966475248
RERDKEREK	9	Unmodified	_RERDKEREK_					0	0	0			REV__PRRC2C|p.I863Kfs*12|1|0.09|ENSG00000117523|chr1:171540060-171540063|TCAG/-|frameshift_variant	REV__PRRC2C|p.I863Kfs*12|1|0.09|ENSG00000117523|chr1:171540060-171540063|TCAG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.215576171875	3	415.893459	1244.65855	0.026011	1.0818E-05	2.3598	0.00098143	2.3858	0.00099224	416.2276709147598	22.49	0.96004	22.445	22.124	23.084	-0.044867					49	33	2	0	0	0	0.2719	1	3153	3153		8.9762	0	1	154480	+		37094	14975	21812	21813	44821	44821					0.04600319538167241
RERFLTLM	8	Unmodified	_RERFLTLM_					0	0	0		ENST00000447771.6_1_5:150076131-150076393:-|nuORF	ENST00000447771.6_1_5:150076131-150076393:-|nuORF	ENST00000447771.6_1_5:150076131-150076393:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3082885742188	2	533.297319	1064.58008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.751	1	61.751	61.251	62.251	0								0	0	0	0.34229	1	15193	15193		18.135	0	1				37095	10607	21813	21814	44822	44822					0.05037795699377057
RERKVEASNSL	11	Unmodified	_RERKVEASNSL_					0	0	0			REV__ENST00000544107.1_1_11:63304348-63313725:+|nuORF	REV__ENST00000544107.1_1_11:63304348-63313725:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8882751464844	3	430.237114	1287.68951	-0.66084	-0.00028432	2.8823	0.0012401	2.2215	0.00095576	430.2387473854416	34.397	0.45257	34.397	34.22	34.672	0					21	15	2	0	0	0	0.33169	1	6726	6726		6.2344	1.3373	1	72890	+		37096	15619	21814	21815	44823	44823					0.05717472852438732
RERKVEASNSL	11	Unmodified	_RERKVEASNSL_					0	0	0			REV__ENST00000544107.1_1_11:63304348-63313725:+|nuORF	REV__ENST00000544107.1_1_11:63304348-63313725:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	430.237114	1287.68951	-0.68871	-0.00029631	3.7514	0.001614	3.0627	0.0013177	430.23945582426086	34.33	0.22294	34.397	34.29	34.513	0.06636	-0.00039537	0.00056391	NaN	6.2344	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74995	+		37097	15619	21814	21815							0.05717472852438732
RERLEKMKK	9	Unmodified	_RERLEKMKK_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6;nc|ENSG00000155754|Q53TS8-2|C2CD6;nc|ENSG00000155754|Q53TS8-3|C2CD6;nc|ENSG00000155754|Q53TS8-1|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.57623291015625	3	406.576413	1216.70741	-0.42748	-0.0001738	0.018931	7.697E-06	-0.40854	-0.0001661	406.5764641415779	13.296	0.61263	13.228	13.073	13.686	-0.067495					52	21	4	0	0	0	0.33276	1	423	423		2.2828	0	1	498400			37098	5192	21815	21816	44824	44824					0.10772516573570101
RERPPESR	8	Unmodified	_RERPPESR_					0	0	0			REV__nc|ENSG00000079841|Q86UR5-2|RIMS1	REV__nc|ENSG00000079841|Q86UR5-2|RIMS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2413940429688	2	513.775597	1025.53664	0.17596	9.0403E-05	-0.39564	-0.00020327	-0.21968	-0.00011287	513.7753700086474	23.832	0.34672	23.759	23.588	23.935	-0.072559					18	11	2	0	0	0	0.34272	1	3531	3531		7.9102	0	1	44685	+		37099	13877	21816	21817	44825	44825					0.02489322246469783
RERPVFPA	8	Unmodified	_RERPVFPA_					0	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.76092529296875	2	486.274701	970.534849	0.072317	3.5166E-05	0.41343	0.00020104	0.48574	0.00023621	486.27478992701117	30.626	1.0024	30.653	30.109	31.111	0.027157					61	35	2	0	0	0	0.37937	1	5699	5699		21.747	0.87544	1	506450	+		37100	14459	21817	21818	44826	44826					0.0484031322851024
RERSLQCENL	10	Unmodified	_RERSLQCENL_					0	0	0		ENSG00000258472|ENST00000531839|unknown;ENSG00000076382|ENST00000321765|SPAG5	ENSG00000258472|ENST00000531839|unknown;ENSG00000076382|ENST00000321765|SPAG5	ENSG00000076382|ENST00000321765|SPAG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.8121948242188	2	624.311686	1246.60882	-0.060168	-3.7563E-05	-0.36495	-0.00022784	-0.42512	-0.00026541	624.8121420639108	82.057	0.1246	82.126	82.086	82.211	0.068993					5	4	2	0	0	0	0.40262	1	21406	21406		2.9952	0	1	150770			37101	8641;1064	21818	21819	44827	44827					-0.004621314621090278
RERSLTRGP	9	Unmodified	_RERSLTRGP_					0	0	0		nc|ENSG00000169247|Q8TF17-5|SH3TC2;ENSG00000169247|ENST00000515425|SH3TC2	nc|ENSG00000169247|Q8TF17-5|SH3TC2	nc|ENSG00000169247|Q8TF17-5|SH3TC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.9223022460938	2	536.304521	1070.59449	0.14091	7.5572E-05	0.022018	1.1808E-05	0.16293	8.7381E-05	536.3045540461353	14.301	0.83967	14.235	13.889	14.728	-0.066068					60	29	3	0	0	0	0.26168	1	620	620		1.8442	0	1	528580			37102	6342	21819	21820	44828	44828					0.06201584171913055
RERSPRSEPP	10	Unmodified	_RERSPRSEPP_					0	0	0		ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-2|RBBP6	ENSG00000122257|ENST00000319715|RBBP6	ENSG00000122257|ENST00000319715|RBBP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.5690612792969	3	404.214421	1209.62143	-0.19141	-7.7369E-05	4.198	0.0016969	4.0066	0.0016195	404.5512653930794	18.009	0.12075	18.009	17.93	18.051	0					5	3	2	0	0	0	0.32072	1	1780	1780		1.4551	0.26178	1	12408			37103	3036	21820	21821	44829	44829					0.025006479924286396
RERTIILFDL	10	Unmodified	_RERTIILFDL_					0	0	0		ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.3731689453125	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.448	1	95.448	94.948	95.948	0								0	0	0	0.38126	1	25479	25479		1.6526	0	1				37104	9732	21821	21822	44830	44830					0.10829323385610223
RERTIILFDL	10	Unmodified	_RERTIILFDL_					0	0	0		ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.37548828125	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.317	1	96.317	95.817	96.817	0								0	0	0	0.38126	1	25730	25730		1.6526	0	1				37105	9732	21821	21822	44831	44831					0.10829323385610223
RERTIILFDL	10	Unmodified	_RERTIILFDL_					0	0	0		ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.3722534179688	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.908	1	96.908	96.408	97.408	0								0	0	0	0.38126	1	25905	25905		1.6526	0	1				37106	9732	21821	21822	44832	44832					0.10829323385610223
RERTIILFDL	10	Unmodified	_RERTIILFDL_					0	0	0		ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.3740234375	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.104	1	97.104	96.604	97.604	0								0	0	0	0.38126	1	25960	25960		1.6526	0	1				37107	9732	21821	21822	44833	44833					0.10829323385610223
RERTIILFDL	10	Unmodified	_RERTIILFDL_					0	0	0		ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.3753662109375	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.166	1	95.249	94.749	95.749	0.082779								0	0	0	0.38126	1	25411	25411		1.6526	0	1				37108	9732	21821	21822	44834	44834					0.10829323385610223
RERTIILFDL	10	Unmodified	_RERTIILFDL_					0	0	0		ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.3728637695312	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.434	1	95.511	95.011	96.011	0.077408								0	0	0	0.38126	1	25491	25491		1.6526	0	1				37109	9732	21821	21822	44835	44835					0.10829323385610223
RERTIILFDL	10	Unmodified	_RERTIILFDL_					0	0	0		ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.3732299804688	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.732	1	95.809	95.309	96.309	0.077408								0	0	0	0.38126	1	25573	25573		1.6526	0	1				37110	9732	21821	21822	44836	44836					0.10829323385610223
RERTIILFDL	10	Unmodified	_RERTIILFDL_					0	0	0		ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.3753662109375	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.419	1	97.49	96.99	97.99	0.070465								0	0	0	0.38126	1	26069	26069		1.6526	0	1				37111	9732	21821	21822	44837	44837					0.10829323385610223
RERTIILFDL	10	Unmodified	_RERTIILFDL_					0	0	0		ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3733520507812	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.775	1	95.771	95.271	96.271	-0.0038147								0	0	0	0.38126	1	25594	25594		1.6526	0	1				37112	9732	21821	21822	44838	44838					0.10829323385610223
RERTIILFDL	10	Unmodified	_RERTIILFDL_					0	0	0		ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3723754882812	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.002	1	96.996	96.496	97.496	-0.0055466								0	0	0	0.38126	1	25956	25956		1.6526	0	1				37113	9732	21821	21822	44839	44839					0.10829323385610223
RERTIILFDL	10	Unmodified	_RERTIILFDL_					0	0	0		ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	ENST00000367255.9_1_6:152748906-152749522:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.373779296875	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.508	1	97.501	97.001	98.001	-0.0065536								0	0	0	0.38126	1	26107	26107		1.6526	0	1				37114	9732	21821	21822	44840	44840					0.10829323385610223
RESDRVYL	8	Unmodified	_RESDRVYL_					0	0	0		nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2;nc|ENSG00000169129|Q8N4X5-3|AFAP1L2;ENST00000491814.1_1_10:116056685-116061337:-|nuORF	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2214965820312	2	519.272355	1036.53016	0.22937	0.0001191	-3.1244	-0.0016224	-2.895	-0.0015033	519.2699490650219	69.577	0.5743	69.577	69.398	69.972	0					38	20	3	0	0	0	0.32099	1	17561	17561		25.399	14.575	1	134520			37115	6329	21822	21823	44841	44841					0.013353842950891703
RESELKTQQSL	11	Unmodified	_RESELKTQQSL_					0	0	0			REV__ENSG00000165359|ENST00000639893|INTS6L	REV__ENSG00000165359|ENST00000639893|INTS6L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.7513427734375	3	440.236891	1317.68884	-0.1933	-8.5097E-05	0.90034	0.00039636	0.70704	0.00031126	440.2372094714553	14.387	0.25423	14.387	14.307	14.561	0					17	8	3	0	0	0	0.33348	1	728	728		0.40827	0	1	41094	+		37116	17230	21823	21824	44842	44842					0.04270633412738789
RESPPPSALQ	10	Unmodified	_RESPPPSALQ_					0	0	0		ENSG00000176182|ENST00000322217|MYPOP	ENSG00000176182|ENST00000322217|MYPOP	ENSG00000176182|ENST00000322217|MYPOP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2855834960938	2	541.285463	1080.55637	0.18709	0.00010127	0.20607	0.00011154	0.39316	0.00021281	541.2855710142015	15.123	0.72984	15.123	14.949	15.679	0					54	24	4	0	0	0	0.33104	1	918	918		16.149	0	1	376980			37117	6906	21824	21825	44843	44843					0.019316534665676954
RESPPPSALQ	10	Unmodified	_RESPPPSALQ_					0	0	0		ENSG00000176182|ENST00000322217|MYPOP	ENSG00000176182|ENST00000322217|MYPOP	ENSG00000176182|ENST00000322217|MYPOP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2857055664062	2	541.285463	1080.55637	0.28531	0.00015443	0.15603	8.4457E-05	0.44134	0.00023889	541.2855644914907	15.294	1.0202	15.184	14.676	15.696	-0.10981					69	35	4	0	0	0	0.35637	1	999	999		11.495	0	1	314280			37118	6906	21824	21825	44844	44844					0.019316534665676954
RESQVYDKYQK	11	Unmodified	_RESQVYDKYQK_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.28240966796875	3	481.912407	1442.71539	0.13189	6.356E-05	0.96593	0.00046549	1.0978	0.00052905	481.9134808936686	23.684	0.97326	23.611	23.206	24.179	-0.072559					53	33	2	0	0	0	0.33296	1	3581	3581		2.6312	0	1	98528	+		37119	20693	21825	21826	44845	44845					0.011743223040411976
RETEILKVR	9	Unmodified	_RETEILKVR_					0	0	0		ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.3455810546875	2	572.345855	1142.67716	0.073165	4.1876E-05	0.12169	6.9651E-05	0.19486	0.00011153	572.3458133593919	14.612	0.25562	14.507	14.368	14.623	-0.10466					16	8	2	0	0	0	0.33508	1	807	807		3.5965	0	1	60621			37120	2595	21826	21827	44846	44846					0.11152481180033647
RETEILKVR	9	Unmodified	_RETEILKVR_					0	0	0		ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3462524414062	2	572.345855	1142.67716	-0.076814	-4.3964E-05	0.2633	0.0001507	0.18649	0.00010673	572.3459673726611	14.638	0.24564	14.572	14.427	14.672	-0.066067					17	8	3	0	0	0	0.33508	1	792	792		3.5965	0	1	46963			37121	2595	21826	21827	44847	44847					0.11152481180033647
RETELLFL	8	Unmodified	_RETELLFL_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.7900695800781	2	510.78985	1019.56515	0.26663	0.00013619	-0.2463	-0.00012581	0.020335	1.0387E-05	510.78981505482454	81.775	0.63351	81.751	81.395	82.028	-0.02404					67	27	4	0	0	0	0.28696	1	21256	21256		32.305	3.2239	1	664850			37122	3128	21827	21828	44848	44848					0.056146271030456774
RETELLFL	8	Unmodified	_RETELLFL_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	510.78985	1019.56515	0.019023	9.7166E-06	-0.021928	-1.12E-05	-0.0029049	-1.4838E-06	510.7899654976644	81.653	0.66911	81.722	81.4	82.069	0.068993	-0.0055405	0.00016994	NaN	32.305	52	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	568980			37123	3128	21827	21828							0.056146271030456774
RETLNPPL	8	Unmodified	_RETLNPPL_					0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2428283691406	2	470.266542	938.51853	0.032019	1.5058E-05	-0.40774	-0.00019174	-0.37572	-0.00017669	470.26651107795317	29.465	0.68464	29.478	29.166	29.85	0.013475					44	23	3	0	0	0	0.34378	1	5190	5190		3.9444	0.3479	1	234560	+		37124	16387	21828	21829	44849	44849					0.0468118727176261
RETSGFPSKRK	11	Unmodified	_RETSGFPSKRK_					0	0	0			REV__nc|ENSG00000188895|Q68DK7-3|MSL1	REV__nc|ENSG00000188895|Q68DK7-3|MSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.8604736328125	2	646.857118	1291.69968	0.29566	0.00019125	3.7193	0.0024058	4.0149	0.0025971	647.8618063979186	103.16	0.27206	103.16	102.97	103.24	-0.0011139					73	34	3	0	0	0	0.42346	1	27468	27468		8.1555	0	1	22819000	+		37125	18579	21829	21830	44850	44850					0.06550080577653716
RETSGFPSKRK	11	Unmodified	_RETSGFPSKRK_					0	0	0			REV__nc|ENSG00000188895|Q68DK7-3|MSL1	REV__nc|ENSG00000188895|Q68DK7-3|MSL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	646.857118	1291.69968	0.17352	0.00011224	5.9326	0.0038375	6.1061	0.0039498	646.8615679891187	103.2	0.055534	103.21	103.17	103.23	0.0082703	0.025232	0.0026106	NaN	8.1555	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5940900	+		37126	18579	21829	21830							0.06550080577653716
RETTPPRRLL	10	Unmodified	_RETTPPRRLL_					0	0	0			REV__ENST00000330964.9_1_15:63449741-63449897:-|nuORF	REV__ENST00000330964.9_1_15:63449741-63449897:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3720703125	2	619.870028	1237.7255	0.29543	0.00018313	-0.1832	-0.00011356	0.11223	6.9568E-05	619.8690396100932	94.564	1.5426	94.562	93.798	95.341	-0.0020142					222	130	2	0	0	0	0.40262	1	25172	25172		2.9952	1.151	1	200390	+		37127	20041	21830	21831	44851	44851					0.11614974819940471
REVKEKMKEKE	11	Unmodified	_REVKEKMKEKE_					0	0	0			REV__nc|ENSG00000166226|P78371-2|CCT2	REV__nc|ENSG00000166226|P78371-2|CCT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.9562683105469	3	478.597543	1432.7708	0.40646	0.00019453	-0.12442	-5.9548E-05	0.28204	0.00013498	478.5975816718597	40.386	0.43552	40.485	40.23	40.666	0.099407					26	15	2	0	0	0	0.33146	1	8539	8539		6.6235	1.425	1	270690	+		37128	17303	21831	21832	44852	44852					0.07172412500131031
REVLHHFH	8	Unmodified	_REVLHHFH_					0	0	0			REV__ENSG00000141665|ENST00000419743|FBXO15	REV__ENSG00000141665|ENST00000419743|FBXO15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2964477539062	2	537.783225	1073.5519	0.37619	0.00020231	1.1604	0.00062405	1.5366	0.00082636	537.7840096476111	31.009	0.11475	31.009	30.948	31.062	0					5	3	2	0	0	0	0.34039	1	5741	5741		15.847	7.937	1	62614	+		37129	16091	21832	21833	44853	44853					0.018062338343497686
REVLLQEKQEK	11	Unmodified	_REVLLQEKQEK_					0	0	0		nc|ENSG00000111291|Q9NZD1-3|GPRC5D	nc|ENSG00000111291|Q9NZD1-3|GPRC5D	nc|ENSG00000111291|Q9NZD1-3|GPRC5D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2683410644531	3	467.268302	1398.78308	-0.11059	-5.1677E-05	0.31398	0.00014672	0.20339	9.5038E-05	467.2685184234812	41.991	0.5826	41.991	41.825	42.407	0					42	20	3	0	0	0	0.40539	1	9138	9138		10.527	1.2837	1	1237600			37130	12648	21833	21834	44854	44854					0.09963772234846147
REVTMQWPR	9	Unmodified	_REVTMQWPR_					0	0	0			REV__nc|ENSG00000151665|Q07326-2|PIGF	REV__nc|ENSG00000151665|Q07326-2|PIGF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8081665039062	2	601.808582	1201.60261	0.42069	0.00025317	-1.0073	-0.00060621	-0.58663	-0.00035304	601.807900809562	17.67	0.62358	17.67	17.368	17.991	0					44	20	3	0	0	0	0.35563	1	1790	1790		0.52476	0	1	106710	+		37131	23031	21834	21835	44855	44855					0.0098739509699044
RFCRHLKE	8	Unmodified	_RFCRHLKE_					0	0	0			REV__nc|ENSG00000135476|Q14674-2|ESPL1	REV__nc|ENSG00000135476|Q14674-2|ESPL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7922973632812	2	544.792735	1087.57092	0.38164	0.00020791	0.35915	0.00019566	0.74079	0.00040357	544.7920184654934	116.81	0.41988	116.79	116.69	117.11	-0.022781					69	48	2	0	0	0	0.46022	1	30239	30239		2.3027	0.24298	1	23545	+		37132	15745	21835	21836	44856	44856					0.030634471337180003
RFDEFLIKRLT	11	Unmodified	_RFDEFLIKRLT_					0	0	0			REV__ENSG00000087263|ENST00000566157|OGFOD1	REV__ENSG00000087263|ENST00000566157|OGFOD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.78424072265625	3	479.945271	1436.81398	0.36656	0.00017593	0.031294	1.5019E-05	0.39786	0.00019095	480.2793733866406	89.568	0.30859	89.568	89.373	89.682	-0.00081635					32	22	2	0	0	0	0.33334	1	23644	23644		1.2148	0.588	1	207540	+		37133	13992	21836	21837	44857	44857					0.113049703397337
RFDLMRLHHLT	11	Unmodified	_RFDLMRLHHLT_					0	0	0			REV__KAT6A|p.E789Kfs*10|1|0.16|ENSG00000083168|chr8:41942831-41942864|CGTTTTCTCCTTCCTCAGCCTCCTCTTCTTCCTC/-|frameshift_variant	REV__KAT6A|p.E789Kfs*10|1|0.16|ENSG00000083168|chr8:41942831-41942864|CGTTTTCTCCTTCCTCAGCCTCCTCTTCTTCCTC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.76641845703125	3	480.262717	1437.76632	0.037886	1.8195E-05	-1.731	-0.00083134	-1.6931	-0.00081314	480.26166095699654	26.205	0.93253	26.205	25.741	26.673	0					41	32	2	0	0	0	0.33316	1	4302	4302		2.084	0.75432	1	292970	+		37134	13931	21837	21838	44858	44858					0.06494992867919791
RFEAGPIL	8	Unmodified	_RFEAGPIL_					0	0	0			REV__ENST00000498747.1_1_10:12259419-12280480:+|nuORF	REV__ENST00000498747.1_1_10:12259419-12280480:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.77081298828125	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.97	1	86.054	85.554	86.554	0.084251								0	0	0	0.35843	1	22598	22598		10.824	0.64053	1		+		37135	16542	21838	21839	44859	44859					0.047461061056765175
RFEAGPIL	8	Unmodified	_RFEAGPIL_					0	0	0			REV__ENST00000498747.1_1_10:12259419-12280480:+|nuORF	REV__ENST00000498747.1_1_10:12259419-12280480:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.77069091796875	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.238	1	86.322	85.822	86.822	0.084251								0	0	0	0.35843	1	22680	22680		10.824	0	1		+		37136	16542	21838	21839	44860	44860					0.047461061056765175
RFEAGPIL	8	Unmodified	_RFEAGPIL_					0	0	0			REV__ENST00000498747.1_1_10:12259419-12280480:+|nuORF	REV__ENST00000498747.1_1_10:12259419-12280480:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.77099609375	2	451.758352	901.502152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.141	1	86.132	85.632	86.632	-0.0090027								0	0	0	0.35843	1	22642	22642		10.824	0	1		+		37137	16542	21838	21839	44861	44861					0.047461061056765175
RFEEAHFTF	9	Unmodified	_RFEEAHFTF_					0	0	0		ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.2808227539062	2	592.28018	1182.54581	0.63955	0.00037879	0.24828	0.00014705	0.88783	0.00052585	592.2803149069885	48.202	1.935	48.202	47.959	49.894	0					173	69	5	0	0	0	1.6536E-07	2	11017	10972;11017		173.69	97.926	1	13697000			37138	11253	21839	21840	44862;44863	44863					-0.03816329187861811
RFEEAHFTF	9	Unmodified	_RFEEAHFTF_					0	0	0		ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.796630859375	2	592.28018	1182.54581	0.45371	0.00026872	1.7372	0.0010289	2.1909	0.0012977	592.2812601273807	50.052	0.64531	50.052	49.572	50.217	0					31	23	2	0	0	0	0.18208	1	11531	11531		26.268	1.5943	1	262980			37139	11253	21839	21840	44864	44864					-0.03816329187861811
RFEEAHFTF	9	Unmodified	_RFEEAHFTF_					0	0	0		ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.2805786132812	2	592.28018	1182.54581	0.78569	0.00046535	-0.015987	-9.4689E-06	0.7697	0.00045588	592.280140879002	48.143	1.9085	48.19	47.919	49.827	0.04752					196	70	5	0	0	0	3.6949E-07	1	10999	10999		165.72	69.609	1	13192000			37140	11253	21839	21840	44865	44865					-0.03816329187861811
RFEEAHFTF	9	Unmodified	_RFEEAHFTF_					0	0	0		ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.2805786132812	2	592.28018	1182.54581	0.60524	0.00035847	0.22125	0.00013104	0.82649	0.00048951	592.2802598919694	48.114	1.8173	48.157	47.875	49.692	0.04332					184	66	5	0	0	0	2.5511E-05	2	10980	10980;11363		152.89	77.957	1	15371000			37141	11253	21839	21840	44866;44867	44866					-0.03816329187861811
RFEEAHFTF	9	Unmodified	_RFEEAHFTF_					0	0	0		ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.7958984375	2	592.28018	1182.54581	0.61598	0.00036483	1.6047	0.00095046	2.2207	0.0013153	592.2810911634311	50.075	0.878	50.096	49.483	50.361	0.020691					48	32	2	0	0	0	0.21447	2	11451	11451;11511		21.537	3.3906	1	222290			37142	11253	21839	21840	44868;44869	44868					-0.03816329187861811
RFEEKHAYF	9	Unmodified	_RFEEKHAYF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.53656005859375	3	409.536612	1225.58801	-0.38238	-0.0001566	-0.24625	-0.00010085	-0.62864	-0.00025745	409.53666153538285	28.169	1.2767	28.169	27.84	29.117	0					166	44	5	0	0	0	0.043673	3	4852	4852;4895;5048		55.249	38.974	1	6147400			37143	1686	21840	21841	44870;44871;44872	44870					-0.015763537795010052
RFEEKHAYF	9	Unmodified	_RFEEKHAYF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5365295410156	3	409.536612	1225.58801	-0.14789	-6.0565E-05	-0.45198	-0.0001851	-0.59987	-0.00024567	409.5365869161393	28.205	1.2957	28.201	27.822	29.118	-0.0042572					187	45	5	0	0	0	0.053792	4	4853	4853;4895;4944;5032		51.488	35.213	1	5213300			37144	1686	21840	21841	44873;44874;44875;44876	44873					-0.015763537795010052
RFEEKHAYF	9	Unmodified	_RFEEKHAYF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5364685058594	3	409.536612	1225.58801	-0.26224	-0.0001074	-0.39412	-0.00016141	-0.65637	-0.00026881	409.5366227680914	28.13	1.3889	28.131	27.764	29.153	0.0004673					159	49	4	0	0	0	0.072885	3	4887	4837;4887;5034		44.392	28.117	1	5331700			37145	1686	21840	21841	44877;44878;44879	44878					-0.015763537795010052
RFEPRIDKL	9	Unmodified	_RFEPRIDKL_					0	0	0			REV__NFIX|p.R80L|1|0.37|ENSG00000008441|chr19:13025232-13025232|G/T|missense_variant	REV__NFIX|p.R80L|1|0.37|ENSG00000008441|chr19:13025232-13025232|G/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.82275390625	2	587.340572	1172.66659	-0.038981	-2.2895E-05	-0.51293	-0.00030126	-0.55191	-0.00032416	587.3399409618046	13.2	0.20909	13.101	12.98	13.189	-0.099291					9	6	2	0	0	0	0.26204	1	341	341		1.4819	0	1	20154	+		37146	23277	21841	21842	44880	44880					0.08716498525586758
RFEPRIDKL	9	Unmodified	_RFEPRIDKL_					0	0	0			REV__NFIX|p.R80L|1|0.37|ENSG00000008441|chr19:13025232-13025232|G/T|missense_variant	REV__NFIX|p.R80L|1|0.37|ENSG00000008441|chr19:13025232-13025232|G/T|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	587.340572	1172.66659	-0.048261	-2.8345E-05	-0.40082	-0.00023542	-0.44908	-0.00026377	587.3399634821739	13.088	0.22402	13.021	12.965	13.189	-0.067495	-0.071491	0.00035153	NaN	1.4819	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11089	+		37147	23277	21841	21842							0.08716498525586758
RFFIIKESFL	10	Unmodified	_RFFIIKESFL_					0	0	0		ENSG00000175985|ENST00000322564|PLEKHD1	ENSG00000175985|ENST00000322564|PLEKHD1	ENSG00000175985|ENST00000322564|PLEKHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.9197998046875	3	433.920174	1298.73869	-0.32112	-0.00013934	-0.66054	-0.00028662	-0.98165	-0.00042596	433.91989823990457	28.064	0.51097	28.06	27.822	28.333	-0.0042572					46	17	4	0	0	0	0.40943	1	4848	4848		1.7423	0	1	339010			37148	6896	21842	21843	44881	44881					0.10127412879342046
RFFNDRALRAP	11	Unmodified	_RFFNDRALRAP_					0	0	0			REV__nc|ENSG00000135916|Q9NQX7-2|ITM2C	REV__nc|ENSG00000135916|Q9NQX7-2|ITM2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.578857421875	3	454.917827	1361.73165	-0.099238	-4.5145E-05	-0.60051	-0.00027318	-0.69975	-0.00031833	454.91750524462657	23.013	0.8902	23.013	22.622	23.513	0					88	30	4	0	0	0	0.33326	1	3470	3470		1.4551	0.94916	1	706930	+		37149	23000	21843	21844	44882	44882					0.06525493051458398
RFFVPLFLVGI	11	Unmodified	_RFFVPLFLVGI_					0	0	0		ENSG00000167531|ENST00000301046|LALBA	ENSG00000167531|ENST00000301046|LALBA	ENSG00000167531|ENST00000301046|LALBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2540283203125	3	436.600665	1306.78016	-0.33299	-0.00014538	-0.25523	-0.00011143	-0.58823	-0.00025682	436.93495495753695	97.244	0.33815	97.244	97.167	97.505	0					43	31	2	0	0	0	0.33346	1	26026	26026		0.50596	0.50596	1	78375			37150	6185	21844	21845	44883	44883					0.13904593638631013
RFFVPLFLVGI	11	Unmodified	_RFFVPLFLVGI_					0	0	0		ENSG00000167531|ENST00000301046|LALBA	ENSG00000167531|ENST00000301046|LALBA	ENSG00000167531|ENST00000301046|LALBA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	436.600665	1306.78016	-0.13443	-5.8692E-05	-0.4166	-0.00018189	-0.55103	-0.00024058	436.6004064284055	97.173	0.37988	97.243	97.039	97.419	0.070465	-0.039597	0.00017747	NaN	0.50596	50	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116610			37151	6185	21844	21845							0.13904593638631013
RFFVPLFLVGI	11	Unmodified	_RFFVPLFLVGI_					0	0	0		ENSG00000167531|ENST00000301046|LALBA	ENSG00000167531|ENST00000301046|LALBA	ENSG00000167531|ENST00000301046|LALBA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	436.600665	1306.78016	0.0016297	7.1155E-07	-0.70184	-0.00030642	-0.70021	-0.00030571	436.60029554377394	97.367	0.55377	97.362	97.039	97.593	-0.0055466	0.078516	-0.00019613	NaN	0.50596	94	54	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267150			37152	6185	21844	21845							0.13904593638631013
RFHRAIKK	8	Unmodified	_RFHRAIKK_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2833862304688	2	528.332885	1054.65122	0.21612	0.00011419	-0.89259	-0.00047158	-0.67646	-0.0003574	528.3320793399663	16.3	0.55688	16.186	15.838	16.395	-0.11434					37	18	4	0	0	0	0.34408	1	1313	1313		2.3027	0	1	67194	+		37153	13593	21845	21846	44884	44884					0.12607676519064626
RFIERTHP	8	Unmodified	_RFIERTHP_					0	0	0			REV__ENSG00000187987|ENST00000289788|ZSCAN23	REV__ENSG00000187987|ENST00000289788|ZSCAN23	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2796020507812	2	528.290882	1054.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.79	1	114.81	114.31	115.31	0.016708								0	0	0	0.37724	1	29845	29845		2.3027	0.4585	1		+		37154	18533	21846	21847	44885	44885					0.042111006315280974
RFIGATANF	9	Unmodified	_RFIGATANF_					0	0	0		ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7665100097656	2	498.766709	995.518865	0.27119	0.00013526	-0.19419	-9.6853E-05	0.077003	3.8406E-05	498.7665986053209	46.545	1.3878	46.545	46.246	47.634	0					108	49	4	0	0	0	0.00012746	2	10485	10485;10536		136.39	71.157	1	6781500			37155	6674	21847	21848	44886;44887	44886					0.02092606991595858
RFIGATANF	9	Unmodified	_RFIGATANF_					0	0	0		ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7667541503906	2	498.766709	995.518865	0.393	0.00019602	-0.39753	-0.00019827	-0.0045263	-2.2576E-06	498.76645721429367	46.34	1.5849	46.4	46.123	47.708	0.059837					122	58	4	0	0	0	0.001957	2	10489	10436;10489		110.55	53.081	1	7463900			37156	6674	21847	21848	44888;44889	44889					0.02092606991595858
RFIGATANF	9	Unmodified	_RFIGATANF_					0	0	0		ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.76654052734375	2	498.766709	995.518865	0.21597	0.00010772	-0.13772	-6.869E-05	0.078255	3.9031E-05	498.76658005225727	46.385	1.4623	46.44	46.136	47.598	0.054371					119	52	4	0	0	0	0.0010968	2	10436	10436;10488		121.53	64.063	1	7387700			37157	6674	21847	21848	44890;44891	44890					0.02092606991595858
RFILNLPTF	9	Unmodified	_RFILNLPTF_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8294677734375	2	560.829309	1119.64407	0.50669	0.00028417	0.2901	0.0001627	0.79679	0.00044686	560.8291825584856	79	1.178	79.058	78.736	79.914	0.058151					124	49	3	0	0	0	0.00045155	1	20456	20456		129.77	100.69	1	1612300			37158	3255	21848	21849	44892	44892					0.08902899127974706
RFIPYTEEF	9	Unmodified	_RFIPYTEEF_					0	0	0		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.2982788085938	2	601.298039	1200.58152	0.39896	0.0002399	0.35677	0.00021453	0.75574	0.00045442	601.2980781664563	59.182	1.0335	59.182	58.864	59.897	0					92	36	4	0	0	0	0.0037449	2	14386	14386;14437		96.367	67.285	1	2339300			37159	2138	21849	21850	44893;44894	44893					-0.010742917308789401
RFIPYTEEF	9	Unmodified	_RFIPYTEEF_					0	0	0		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.29833984375	2	601.298039	1200.58152	0.50527	0.00030382	0.18589	0.00011178	0.69116	0.0004156	601.2979418430743	59.014	1.0853	59.105	58.792	59.878	0.091301					98	38	4	0	0	0	0.0037449	3	14335	14335;14386;14455		96.367	60.24	1	2206300			37160	2138	21849	21850	44895;44896;44897	44895					-0.010742917308789401
RFIPYTEEF	9	Unmodified	_RFIPYTEEF_					0	0	0		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.2984619140625	2	601.298039	1200.58152	0.488	0.00029343	0.40182	0.00024161	0.88982	0.00053504	601.2981977581021	59.144	0.90968	59.13	58.656	59.566	-0.014267					91	31	4	0	0	0	0.0037449	1	14381	14381		96.367	60.24	1	2238200			37161	2138	21849	21850	44898	44898					-0.010742917308789401
RFIRPMGLRF	10	Oxidation (M)	_RFIRPM(Oxidation (M))GLRF_		RFIRPM(1)GLRF		RFIRPM(41)GLRF	0	0	1		ENSG00000164346|ENST00000610426|NSA2;ENST00000560515.1_1_15:59693458-59694001:-|nuORF	ENSG00000164346|ENST00000610426|NSA2;ENST00000560515.1_1_15:59693458-59694001:-|nuORF	ENST00000560515.1_1_15:59693458-59694001:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2505187988281	3	436.91677	1307.72848	-0.044542	-1.9461E-05	-0.57757	-0.00025235	-0.62211	-0.00027181	436.91668107762735	41.79	0.71748	41.79	41.504	42.221	0					70	30	3	0	0	0	0.13386	1	9018	9018		40.725	20.144	1	3742800			37162	5837;11898	21850	21851	44899	44899		691			0.08692526673075918
RFIRRSMMAP	10	Unmodified	_RFIRRSMMAP_					0	0	0			REV__ENST00000426263.7_1_1:43392549-43392687:-|nuORF	REV__ENST00000426263.7_1_1:43392549-43392687:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.9186706542969	3	422.23036	1263.66925	0.11527	4.8669E-05	0.49385	0.00020852	0.60912	0.00025719	422.23042678710857	44.791	0.68497	44.859	44.349	45.034	0.068569					27	24	2	0	0	0	0.31899	1	9898	9898		4.7159	2.2174	1	164580	+		37163	20901	21851	21852	44900	44900					0.047963073872779205
RFKAIEKMK	9	Unmodified	_RFKAIEKMK_					0	0	0		nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1;ENST00000506524.5_1_5:145862104-145889630:+|nuORF	nc|ENSG00000113649|O14776-2|TCERG1	nc|ENSG00000113649|O14776-2|TCERG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8422241210938	2	575.841894	1149.66923	0.21142	0.00012175	1.1115	0.00064003	1.3229	0.00076178	575.8423428114145	80.387	2.5277	80.387	78.95	81.478	0					278	106	3	0	0	0	0.23007	2	21064	21064;21188		19.257	5.3509	1	5564600			37164	2521	21852	21853	44901;44902	44901					0.10038630658914371
RFKEANNFL	9	Unmodified	_RFKEANNFL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.8038330078125	2	569.803823	1137.59309	0.46437	0.0002646	-0.46545	-0.00026521	-0.001078	-6.1425E-07	569.8035701935323	36.815	1.3769	36.815	36.358	37.735	0					119	48	4	0	0	0	0.05341	2	7487	7487;7534		51.63	23.143	1	1692900			37165	4775	21853	21854	44903;44904	44903					0.029799500831359182
RFKEANNFL	9	Unmodified	_RFKEANNFL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.8037719726562	2	569.803823	1137.59309	0.48285	0.00027513	-0.38786	-0.00022101	0.094986	5.4123E-05	569.803565019489	36.621	1.2856	36.709	36.238	37.524	0.087406					114	46	4	0	0	0	0.04299	2	7475	7475;7527		55.503	24.866	1	1748100			37166	4775	21853	21854	44905;44906	44905					0.029799500831359182
RFKEANNFL	9	Unmodified	_RFKEANNFL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.8037109375	2	569.803823	1137.59309	0.6345	0.00036154	-0.57084	-0.00032527	0.063654	3.627E-05	569.8034437802139	36.682	1.2496	36.775	36.458	37.707	0.093018					102	45	4	0	0	0	0.048637	3	7443	7443;7490;7541		53.404	23.563	1	1799100			37167	4775	21853	21854	44907;44908;44909	44907					0.029799500831359182
RFKGAALCPPI	11	Unmodified	_RFKGAALCPPI_					0	0	0			REV__ENST00000488800.5_1_14:23292267-23292577:-|nuORF	REV__ENST00000488800.5_1_14:23292267-23292577:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8338623046875	2	586.834069	1171.65358	0.28065	0.0001647	-0.0057981	-3.4025E-06	0.27485	0.00016129	586.8338136975857	82.166	2.7659	82.235	81.4	84.166	0.068993					315	113	4	0	0	0	0.46059	1	21685	21685		3.2813	3.2813	1	1932100	+		37168	21580	21854	21855	44910	44910					0.07462344141868016
RFKKMQILE	9	Unmodified	_RFKKMQILE_					0	0	0			REV__ENST00000282120.6_1_2:85548683-85548773:-|nuORF	REV__ENST00000282120.6_1_2:85548683-85548773:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.8482666015625	2	596.847176	1191.6798	0.4246	0.00025342	1.2862	0.00076766	1.7108	0.0010211	596.8482041670618	92.081	0.64026	92.081	91.898	92.538	0					66	45	2	0	0	0	0.34681	1	24520	24520		1.8442	0	1	86384	+		37169	19717	21855	21856	44911	44911					0.09162613313355905
RFKKMQILE	9	Unmodified	_RFKKMQILE_					0	0	0			REV__ENST00000282120.6_1_2:85548683-85548773:-|nuORF	REV__ENST00000282120.6_1_2:85548683-85548773:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.8488159179688	2	596.847176	1191.6798	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.164	1	92.165	91.665	92.665	0.00046539								0	0	0	0.25631	1	24496	24496		4.3292	0	1		+		37170	19717	21855	21856	44912	44912					0.09162613313355905
RFKKRTELF	9	Unmodified	_RFKKRTELF_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.9119873046875	3	408.911902	1223.71388	-0.17297	-7.0729E-05	-0.038446	-1.5721E-05	-0.21142	-8.645E-05	408.9118247690012	23.907	1.9041	23.907	23.278	25.182	0					162	65	4	0	0	0	0.13296	3	3623	3580;3623;3678		33.445	22.546	1	803240			37171	5505	21856	21857	44913;44914;44915	44914					0.11096777796592505
RFKKRTELF	9	Unmodified	_RFKKRTELF_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.911865234375	3	408.911902	1223.71388	0.041756	1.7075E-05	-0.26445	-0.00010814	-0.2227	-9.1063E-05	408.9117442609076	24.249	1.3575	24.176	23.728	25.086	-0.072559					149	46	4	0	0	0	0.23612	2	3675	3675;3719		18.373	7.4741	1	677360			37172	5505	21856	21857	44916;44917	44916					0.11096777796592505
RFKKRTELF	9	Unmodified	_RFKKRTELF_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.9117736816406	3	408.911902	1223.71388	-0.078208	-3.198E-05	-0.23044	-9.423E-05	-0.30865	-0.00012621	408.91175321458064	24.321	1.4933	24.282	23.878	25.371	-0.038927					156	51	4	0	0	0	0.22101	2	3738	3686;3738		20.581	13.479	1	811220			37173	5505	21856	21857	44918;44919	44919					0.11096777796592505
RFKNKAYLL	9	Unmodified	_RFKNKAYLL_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.8113403320312	2	576.848033	1151.68151	0.41286	0.00023816	-0.3823	-0.00022053	0.030565	1.7631E-05	576.8477275412049	29.551	0.53559	29.551	29.324	29.86	0					30	18	2	0	0	0	0.25202	1	5274	5274		10.824	1.4408	1	144640			37174	1623	21857	21858	44920	44920					0.11173990393604072
RFKNKAYLL	9	Unmodified	_RFKNKAYLL_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8117065429688	2	576.848033	1151.68151	0.37103	0.00021403	-0.48691	-0.00028087	-0.11588	-6.6845E-05	576.8475909631924	29.595	0.55589	29.607	29.302	29.858	0.012266					33	18	3	0	0	0	0.25202	1	5266	5266		10.824	2.6684	1	127250			37175	1623	21857	21858	44921	44921					0.11173990393604072
RFKNLASR	8	Unmodified	_RFKNLASR_					0	0	0		ENSG00000198734|ENST00000367797|F5;CON__Q28107	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7901306152344	2	496.293425	990.572297	0.26478	0.00013141	-1.6312	-0.00080955	-1.3664	-0.00067814	496.2924587242208	18.358	0.51866	18.358	18.127	18.646	0					25	17	2	0	0	0	0.34408	1	1972	1972		2.3027	0	1	82762			37176	8114	21858	21859	44922	44922					0.0766340449412155
RFKTQPVTF	9	Unmodified	_RFKTQPVTF_					0	0	0		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3169555664062	2	562.316566	1122.61858	0.39673	0.00022309	-0.13356	-7.51E-05	0.26318	0.00014799	562.3164756035778	36.279	1.8632	36.279	35.932	37.795	0					203	66	5	0	0	0	0.001957	7	7292	7292;7344;7392;7437;7483;7539;7588		110.55	74.426	1	11338000			37177	7681	21859	21860	44923;44924;44925;44926;44927;44928;44929	44923					0.06217424605551969
RFKTQPVTF	9	Unmodified	_RFKTQPVTF_					0	0	0		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3167724609375	2	562.316566	1122.61858	0.51273	0.00028832	-0.28396	-0.00015967	0.22878	0.00012865	562.3163809374781	36.161	1.9664	36.244	35.874	37.84	0.082359					198	71	5	0	0	0	0.0010968	7	7342	7257;7300;7342;7389;7442;7494;7544		121.53	77.762	1	13680000			37178	7681	21859	21860	44930;44931;44932;44933;44934;44935;44936	44932					0.06217424605551969
RFKTQPVTF	9	Unmodified	_RFKTQPVTF_					0	0	0		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3168334960938	2	562.316566	1122.61858	0.56428	0.00031731	-0.28774	-0.0001618	0.27654	0.0001555	562.3163773375763	36.152	1.8845	36.239	35.844	37.728	0.086246					200	68	5	0	0	0	0.00019464	6	7343	7245;7293;7343;7387;7434;7483		133.05	89.194	1	11993000			37179	7681	21859	21860	44937;44938;44939;44940;44941;44942	44939					0.06217424605551969
RFLAATFLL	9	Unmodified	_RFLAATFLL_					0	0	0		nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2	nc|ENSG00000119655|P61916-2|NPC2	nc|ENSG00000119655|P61916-2|NPC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3187255859375	2	526.318577	1050.6226	0.37442	0.00019706	-3.1447	-0.0016551	-2.7703	-0.0014581	526.3169174677877	76.083	0.62133	76.137	75.594	76.216	0.053413					66	20	4	0	0	0	0.05341	2	19468	19468;19518		51.63	5.6089	1	1617400			37180	2892	21860	21861	44943;44944	44943					0.09931514099275773
RFLATVKAHPK	11	Unmodified	_RFLATVKAHPK_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.27001953125	3	423.259302	1266.75608	-0.052457	-2.2203E-05	0.1469	6.2178E-05	0.094445	3.9975E-05	423.25930067264517	21.693	1.0843	21.693	21.138	22.222	0					81	38	3	0	0	0	0.45202	1	3045	3045		4.4062	0.81909	1	262980			37181	2845	21861	21862	44945	44945					0.1333675320495331
RFLDKALEL	9	Unmodified	_RFLDKALEL_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8242797851562	2	552.824224	1103.63389	0.42927	0.00023731	-0.39558	-0.00021868	0.033692	1.8625E-05	552.8232171525165	52.967	0.75482	52.967	52.686	53.441	0					52	27	3	0	0	0	0.073988	2	12444	12444;12493		43.982	9.5801	1	1013600			37182	3842	21862	21863	44946;44947	44946					0.08622291402753035
RFLDKALEL	9	Unmodified	_RFLDKALEL_					0	0	0		ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	ENSG00000135069|ENST00000376588|PSAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.8240356445312	2	552.824224	1103.63389	0.64248	0.00035518	-1.1673	-0.00064529	-0.52478	-0.00029011	552.8229406565173	52.926	0.74413	52.983	52.687	53.431	0.056259					50	26	3	0	0	0	0.069258	1	12475	12475		45.74	5.5007	1	1140100			37183	3842	21862	21863	44948	44948					0.08622291402753035
RFLIRLCC	8	Unmodified	_RFLIRLCC_					0	0	0			REV__ENSG00000124198|ENST00000371917|ARFGEF2	REV__ENSG00000124198|ENST00000371917|ARFGEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2830810546875	2	512.283157	1022.55176	0.076618	3.925E-05	-0.54539	-0.00027939	-0.46877	-0.00024014	512.2827474035514	18.964	0.59319	18.847	18.582	19.175	-0.11739					48	20	3	0	0	0	0.46022	1	2156	2156		2.3027	0	1	186250	+		37184	15218	21863	21864	44949	44949					0.04138774518446553
RFLLLVILFL	10	Unmodified	_RFLLLVILFL_					0	0	0		nc|ENSG00000182271|Q6UXZ0-2|TMIGD1;ENSG00000182271|ENST00000328886|TMIGD1	nc|ENSG00000182271|Q6UXZ0-2|TMIGD1	nc|ENSG00000182271|Q6UXZ0-2|TMIGD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.3900146484375	2	623.917927	1245.8213	-0.15988	-9.9749E-05	-0.83922	-0.0005236	-0.9991	-0.00062335	624.4191085945861	103.07	0.10886	103.08	103	103.11	0.0082626					22	15	2	0	0	0	0.32167	1	27410	27410		0.40072	0	1	4604000			37185	7285	21864	21865	44950	44950					0.2082235467812552
RFLNSSNDHRF	11	Unmodified	_RFLNSSNDHRF_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2323303222656	3	464.897092	1391.66945	-0.2864	-0.00013315	0.049014	2.2786E-05	-0.23739	-0.00011036	464.8967906632884	27.587	0.60362	27.566	27.291	27.895	-0.021412					44	20	3	0	0	0	0.2199	2	4696	4696;4713		29.419	23.636	1	236290			37186	2426	21865	21866	44951;44952	44951					-0.010722780875539684
RFLNSSNDHRF	11	Unmodified	_RFLNSSNDHRF_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.8965148925781	3	464.897092	1391.66945	-0.14698	-6.8332E-05	-0.71441	-0.00033213	-0.86139	-0.00040046	464.89640134584573	27.644	0.57656	27.632	27.29	27.867	-0.01156					40	19	3	0	0	0	0.11198	1	4723	4723		39.111	14.882	1	275740			37187	2426	21865	21866	44953	44953					-0.010722780875539684
RFLPHGQLLF	10	Unmodified	_RFLPHGQLLF_					0	0	0		ENSG00000125843|ENST00000615891|AP5S1	ENSG00000125843|ENST00000615891|AP5S1	ENSG00000125843|ENST00000615891|AP5S1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.7893676757812	2	614.353483	1226.69241	0.33823	0.00020779	-0.62627	-0.00038475	-0.28804	-0.00017696	614.3527607353902	56.949	0.23916	56.949	56.799	57.038	0					11	8	2	0	0	0	0.3179	1	13685	13685		3.2813	1.6287	1	113890			37188	3238	21866	21867	44954	44954					0.08813392767888217
RFLPSPVVI	9	Unmodified	_RFLPSPVVI_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;ENST00000497715.1_1_2:225338964-225343150:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.3185424804688	2	514.318577	1026.6226	0.49448	0.00025432	0.069471	3.573E-05	0.56395	0.00029005	514.3184230810351	63.796	0.79058	63.796	63.607	64.398	0					63	28	3	0	0	0	0.047483	2	15815	15815;15866		53.833	29.159	1	983150			37189	577	21867	21868	44955;44956	44955					0.11035514099285137
RFLPSPVVI	9	Unmodified	_RFLPSPVVI_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;ENST00000497715.1_1_2:225338964-225343150:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.3185424804688	2	514.318577	1026.6226	0.38555	0.0001983	0.03371	1.7338E-05	0.41927	0.00021564	514.3184475490102	63.697	0.69927	63.792	63.564	64.263	0.095722					61	24	3	0	0	0	0.063853	2	15774	15774;15821		47.749	27.295	1	1139700			37190	577	21867	21868	44957;44958	44957					0.11035514099285137
RFLPSPVVI	9	Unmodified	_RFLPSPVVI_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;ENST00000497715.1_1_2:225338964-225343150:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.3184204101562	2	514.318577	1026.6226	0.40546	0.00020853	-0.048615	-2.5004E-05	0.35684	0.00018353	514.3184329761535	63.84	0.90781	63.831	63.563	64.471	-0.0095291					72	32	3	0	0	0	0.16283	2	15805	15805;15855		29.082	13.234	1	1037300			37191	577	21867	21868	44959;44960	44959					0.11035514099285137
RFLRTFDR	8	Unmodified	_RFLRTFDR_					0	0	0			REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2972412109375	2	555.811982	1109.60941	0.10229	5.6855E-05	2.7272	0.0015158	2.8295	0.0015727	556.3124017824723	101.18	0.039246	101.21	101.19	101.23	0.027206					5	4	2	0	0	0	0.44389	1	26991	26991		7.9102	1.7044	1	36274	+		37192	13645	21868	21869	44961	44961					0.0589907603989559
RFLTLGPVS	9	Unmodified	_RFLTLGPVS_					0	0	0		nc|ENSG00000180422|Q8N9R0|LINC00304	nc|ENSG00000180422|Q8N9R0|LINC00304	nc|ENSG00000180422|Q8N9R0|LINC00304	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7850646972656	2	495.292559	988.570566	0.34991	0.00017331	1.3602	0.00067369	1.7101	0.000847	495.2936600078164	45.707	0.70004	45.767	45.536	46.236	0.059837					45	24	3	0	0	0	0.1854	1	10177	10177		32.305	1.6689	1	401440			37193	12866	21869	21870	44962	44962					0.07582350685515848
RFLTLGPVS	9	Unmodified	_RFLTLGPVS_					0	0	0		nc|ENSG00000180422|Q8N9R0|LINC00304	nc|ENSG00000180422|Q8N9R0|LINC00304	nc|ENSG00000180422|Q8N9R0|LINC00304	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	495.292559	988.570566	0.55701	0.00027588	0.85215	0.00042206	1.4092	0.00069794	495.29338575633693	45.753	0.57885	45.818	45.595	46.174	0.065048	0.017825	-0.00038536	NaN	9.3831	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304290			37194	12866	21869	21870							0.07582350685515848
RFMQDLSIF	9	Unmodified	_RFMQDLSIF_					0	0	0			REV__nc|ENSG00000145868|Q6PIJ6-3|FBXO38	REV__nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.7796630859375	2	578.794609	1155.57467	0.38629	0.00022358	-1.3743	-0.00079545	-0.98804	-0.00057187	578.7938176417764	65.928	0.58655	65.916	65.693	66.28	-0.012146					29	20	2	0	0	0	0.28128	1	16494	16494		11.64	0.81637	1	328390	+		37195	16315	21870	21871	44963	44963					0.003100721169175813
RFMYRILF	8	Unmodified	_RFMYRILF_					0	0	0			REV__ENSG00000174469|ENST00000361727|CNTNAP2	REV__ENSG00000174469|ENST00000361727|CNTNAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.7261352539062	2	573.318054	1144.62156	0.67214	0.00038535	1.1292	0.0006474	1.8014	0.0010328	573.318494745509	60.767	0.41347	60.767	60.495	60.908	0					25	14	3	0	0	0	0.33245	1	14832	14832		19.439	0	1	459630	+		37196	17836	21871	21872	44964	44964					0.05502976458728881
RFNIRALRLW	10	Unmodified	_RFNIRALRLW_					0	0	0		nc|ENSG00000146926|Q8WXI3-2|ASB10;ENSG00000146926|ENST00000420175|ASB10	nc|ENSG00000146926|Q8WXI3-2|ASB10	nc|ENSG00000146926|Q8WXI3-2|ASB10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7450256347656	3	448.938562	1343.79386	-0.18199	-8.1702E-05	0.28476	0.00012784	0.10277	4.6137E-05	449.27279327497666	13.02	0.17049	12.953	12.851	13.022	-0.067496					8	5	2	0	0	0	0.32175	1	317	317		0.13989	0	1	14929			37197	4739	21872	21873	44965	44965					0.13571264190454713
RFNIRALRLW	10	Unmodified	_RFNIRALRLW_					0	0	0		nc|ENSG00000146926|Q8WXI3-2|ASB10;ENSG00000146926|ENST00000420175|ASB10	nc|ENSG00000146926|Q8WXI3-2|ASB10	nc|ENSG00000146926|Q8WXI3-2|ASB10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	448.938562	1343.79386	-0.12159	-5.4588E-05	-0.59124	-0.00026543	-0.71284	-0.00032002	448.9387601685498	12.917	0.12913	12.917	12.874	13.003	0	-0.017951	-0.00094956	NaN	0.13989	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9508.3			37198	4739	21872	21873							0.13571264190454713
RFPEELTQTF	10	Unmodified	_RFPEELTQTF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.320556640625	2	634.319502	1266.62445	0.23041	0.00014616	0.010924	6.9295E-06	0.24134	0.00015309	634.3193313621449	60.317	1.3157	60.317	59.621	60.936	0					80	47	2	0	0	0	0.013686	4	14666	14659;14666;14760;14809		78.61	52.59	1	530000			37199	8613	21873	21874	44966;44967;44968;44969	44967					0.0018047832654701779
RFPEELTQTF	10	Unmodified	_RFPEELTQTF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.82080078125	2	634.319502	1266.62445	0.18401	0.00011672	0.017015	1.0793E-05	0.20103	0.00012752	634.821199132528	61.201	0.66041	61.201	60.962	61.623	0					31	24	2	0	0	0	0.02113	1	15056	15056		70.496	47.837	1	347100			37200	8613	21873	21874	44970	44970					0.0018047832654701779
RFPEELTQTF	10	Unmodified	_RFPEELTQTF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.320068359375	2	634.319502	1266.62445	0.20598	0.00013066	-0.0046427	-2.945E-06	0.20134	0.00012771	634.3193936423047	60.192	1.6534	60.288	59.294	60.947	0.095093					97	59	2	0	0	0	0.0049066	2	14725	14602;14725		92.201	60.164	1	697470			37201	8613	21873	21874	44971;44972	44972					0.0018047832654701779
RFPEELTQTF	10	Unmodified	_RFPEELTQTF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.31982421875	2	634.319502	1266.62445	0.59453	0.00037712	-0.38387	-0.0002435	0.21065	0.00013362	634.3191163441691	60.447	1.6785	60.435	59.312	60.99	-0.011486					97	60	2	0	0	0	0.0042491	3	14653	14653;14787;14854		96.034	68.811	1	464450			37202	8613	21873	21874	44973;44974;44975	44973					0.0018047832654701779
RFPEELTQTF	10	Unmodified	_RFPEELTQTF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	634.319502	1266.62445	0.41921	0.00026591	-0.19127	-0.00012133	0.22793	0.00014458	634.3192460440132	61.114	0.45834	61.105	60.992	61.45	-0.0094566	-0.048201	-0.00015086	NaN	70.496	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614290			37203	8613	21873	21874							0.0018047832654701779
RFPNFTNQL	9	Unmodified	_RFPNFTNQL_					0	0	0		ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.276611328125	2	568.795998	1135.57744	0.83913	0.00047729	-0.32909	-0.00018719	0.51004	0.00029011	568.7960113901888	56.027	0.5358	56.027	55.594	56.13	0					31	18	2	0	0	0	0.075068	1	13386	13386		65.474	25.524	1	457010			37204	6282	21874	21875	44976	44976					0.015076635660989268
RFPNFTNQL	9	Unmodified	_RFPNFTNQL_					0	0	0		ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.2772216796875	2	568.795998	1135.57744	0.71892	0.00040892	-0.93542	-0.00053206	-0.2165	-0.00012314	568.795500602785	55.838	0.42422	55.909	55.565	55.989	0.070885					28	15	2	0	0	0	0.097101	1	13377	13377		57.249	30.981	1	447720			37205	6282	21874	21875	44977	44977					0.015076635660989268
RFPNFTNQL	9	Unmodified	_RFPNFTNQL_					0	0	0		ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.2772827148438	2	568.795998	1135.57744	0.76568	0.00043551	-1.2766	-0.0007261	-0.51088	-0.00029059	568.7951040935797	56.109	0.36071	56.09	55.798	56.159	-0.019081					26	12	3	0	0	0	0.038291	1	13429	13429		57.249	19.098	1	468110			37206	6282	21874	21875	44978	44978					0.015076635660989268
RFPQSTYQF	9	Unmodified	_RFPQSTYQF_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant;ENST00000508132.1_1_5:31294350-31302435:+|nuORF;ENSG00000113100|ENST00000231021|CDH9;ENST00000505045.1_1_5:26903562-26988455:-|nuORF	nc|ENSG00000113361|P55285-2|CDH6;ENST00000505045.1_1_5:26903562-26988455:-|nuORF	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.2879638671875	2	587.288005	1172.56146	0.47967	0.0002817	-0.10555	-6.1989E-05	0.37412	0.00021972	587.2878669742393	48.78	2.6365	48.78	48.077	50.713	0					246	95	3	0	0	0	0.0032746	5	11424	11202;11358;11424;11471;11530		100.09	77.354	1	1128300			37207	2497;11308	21875	21876	44979;44980;44981;44982;44983	44981					-0.017920426708315063
RFPQSTYQF	9	Unmodified	_RFPQSTYQF_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant;ENST00000508132.1_1_5:31294350-31302435:+|nuORF;ENSG00000113100|ENST00000231021|CDH9;ENST00000505045.1_1_5:26903562-26988455:-|nuORF	nc|ENSG00000113361|P55285-2|CDH6;ENST00000505045.1_1_5:26903562-26988455:-|nuORF	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.288330078125	2	587.288005	1172.56146	0.47206	0.00027723	-0.1046	-6.143E-05	0.36746	0.0002158	587.287904004989	48.77	2.7719	48.815	48.099	50.871	0.044891					279	102	3	0	0	0	0.0032746	5	11433	11230;11387;11433;11483;11583		100.09	74.691	1	942240			37208	2497;11308	21875	21876	44984;44985;44986;44987;44988	44986					-0.017920426708315063
RFPQSTYQF	9	Unmodified	_RFPQSTYQF_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant;ENST00000508132.1_1_5:31294350-31302435:+|nuORF;ENSG00000113100|ENST00000231021|CDH9;ENST00000505045.1_1_5:26903562-26988455:-|nuORF	nc|ENSG00000113361|P55285-2|CDH6;ENST00000505045.1_1_5:26903562-26988455:-|nuORF	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.2880249023438	2	587.288005	1172.56146	0.42732	0.00025096	-0.083764	-4.9193E-05	0.34356	0.00020177	587.2878977556379	48.703	2.6701	48.735	48.054	50.724	0.032043					271	98	3	0	0	0	0.0032746	4	11346	11168;11346;11413;11461		100.09	78.554	1	1404700			37209	2497;11308	21875	21876	44989;44990;44991;44992	44990					-0.017920426708315063
RFQEKFFIF	9	Unmodified	_RFQEKFFIF_					0	0	0		nc|ENSG00000078043|O75928-3|PIAS2;ENST00000592011.5_1_18:44416318-44500057:-|nuORF;ENST00000590127.5_1_18:44407908-44497416:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;ENSG00000078043|ENST00000585916|PIAS2	nc|ENSG00000078043|O75928-3|PIAS2	nc|ENSG00000078043|O75928-3|PIAS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.3402709960938	2	631.340041	1260.66553	0.32177	0.00020314	0.74965	0.00047328	1.0714	0.00067643	631.3401553165645	64.856	0.67836	64.844	64.578	65.257	-0.011337					48	24	3	0	0	0	0.13671	1	16141	16141		34.932	10.258	1	370520			37210	1100	21876	21877	44993	44993					0.04562284156691021
RFQEKFFIF	9	Unmodified	_RFQEKFFIF_					0	0	0		nc|ENSG00000078043|O75928-3|PIAS2;ENST00000592011.5_1_18:44416318-44500057:-|nuORF;ENST00000590127.5_1_18:44407908-44497416:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;ENSG00000078043|ENST00000585916|PIAS2	nc|ENSG00000078043|O75928-3|PIAS2	nc|ENSG00000078043|O75928-3|PIAS2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	631.340041	1260.66553	0.39995	0.00025251	0.19747	0.00012467	0.59742	0.00037718	631.3401572693326	64.828	0.45342	64.828	64.563	65.017	0	-0.015965	-0.00014524	NaN	34.932	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297350			37211	1100	21876	21877							0.04562284156691021
RFQEKFFIF	9	Unmodified	_RFQEKFFIF_					0	0	0		nc|ENSG00000078043|O75928-3|PIAS2;ENST00000592011.5_1_18:44416318-44500057:-|nuORF;ENST00000590127.5_1_18:44407908-44497416:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;ENSG00000078043|ENST00000585916|PIAS2	nc|ENSG00000078043|O75928-3|PIAS2	nc|ENSG00000078043|O75928-3|PIAS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	631.340041	1260.66553	0.38908	0.00024564	0.24423	0.00015419	0.63331	0.00039983	631.3401694815108	64.767	0.45604	64.859	64.608	65.064	0.09288	0.015509	-8.6194E-05	NaN	34.932	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200140			37212	1100	21876	21877							0.04562284156691021
RFQKDNRVHI	10	Unmodified	_RFQKDNRVHI_					0	0	0		ENST00000334421.5_1_5:180630399-180630450:-|nuORF	ENST00000334421.5_1_5:180630399-180630450:-|nuORF	ENST00000334421.5_1_5:180630399-180630450:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.8929138183594	3	438.245944	1311.716	-0.058858	-2.5794E-05	0.74096	0.00032472	0.6821	0.00029893	438.2461069406764	22.769	1.4316	22.724	22.124	23.556	-0.044867					89	50	2	0	0	0	0.32122	1	3222	3222		2.086	0	1	190300			37213	9469	21877	21878	44994	44994					0.07261206534417397
RFRCYVIK	8	Unmodified	_RFRCYVIK_					0	0	0			REV__ENST00000432310.1_1_20:34176388-34176526:+|nuORF	REV__ENST00000432310.1_1_20:34176388-34176526:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.75830078125	2	542.807854	1083.60115	0.26131	0.00014184	-2.1469	-0.0011654	-1.8856	-0.0010235	542.8067436058005	31.411	0.36021	31.453	31.183	31.543	0.042364					12	12	2	0	0	0	0.34247	1	5828	5828		8.5933	2.3875	1	76790	+		37214	20959	21878	21879	44995	44995					0.06269805798888228
RFRQFILLT	9	Unmodified	_RFRQFILLT_					0	0	0		nc|ENSG00000163029|Q96SB8-2|SMC6;ENSG00000163029|ENST00000448223|SMC6	nc|ENSG00000163029|Q96SB8-2|SMC6	nc|ENSG00000163029|Q96SB8-2|SMC6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.364013671875	2	597.361308	1192.70806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.179	1	91.269	90.769	91.769	0.090668								0	0	0	0.24715	1	24190	24190		7.2892	1.0834	1				37215	5643	21879	21880	44996	44996					0.11941679284950624
RFRVLWWRRRS	11	Unmodified	_RFRVLWWRRRS_					0	0	0		ENST00000307340.7_1_1:215963551-215972328:-|nuORF	ENST00000307340.7_1_1:215963551-215972328:-|nuORF	ENST00000307340.7_1_1:215963551-215972328:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.9852294921875	3	539.983165	1616.92767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.021	1	97.016	96.516	97.516	-0.0055466								0	0	0	0.38223	1	25962	25962		0.073264	0.073264	1				37216	9277	21880	21881	44997	44997					0.14387923015988235
RFSPPLRLF	9	Unmodified	_RFSPPLRLF_					0	0	0		ENST00000371953.7_1_10:89623465-89623600:+|nuORF	ENST00000371953.7_1_10:89623465-89623600:+|nuORF	ENST00000371953.7_1_10:89623465-89623600:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.8351440429688	2	566.834926	1131.6553	0.12297	6.9705E-05	0.44602	0.00025282	0.56899	0.00032252	566.8352033112105	59.44	1.2671	59.44	58.739	60.006	0					103	44	4	0	0	0	0.0059482	1	14531	14531		85.642	41.783	1	2192200			37217	9829	21881	21882	44998	44998					0.09473721222116183
RFSPPLRLF	9	Unmodified	_RFSPPLRLF_					0	0	0		ENST00000371953.7_1_10:89623465-89623600:+|nuORF	ENST00000371953.7_1_10:89623465-89623600:+|nuORF	ENST00000371953.7_1_10:89623465-89623600:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.8349609375	2	566.834926	1131.6553	0.31666	0.00017949	0.20639	0.00011699	0.52305	0.00029648	566.8350933021885	59.251	1.6154	59.343	58.342	59.957	0.091305					125	57	4	0	0	0	0.0059482	1	14484	14484		85.642	41.783	1	2267900			37218	9829	21881	21882	44999	44999					0.09473721222116183
RFSPPLRLF	9	Unmodified	_RFSPPLRLF_					0	0	0		ENST00000371953.7_1_10:89623465-89623600:+|nuORF	ENST00000371953.7_1_10:89623465-89623600:+|nuORF	ENST00000371953.7_1_10:89623465-89623600:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.8351440429688	2	566.834926	1131.6553	0.39754	0.00022534	0.053118	3.0109E-05	0.45066	0.00025545	566.8349969297341	59.377	1.0203	59.362	58.917	59.937	-0.014267					95	35	4	0	0	0	0.0059482	1	14508	14508		85.642	41.783	1	2267800			37219	9829	21881	21882	45000	45000					0.09473721222116183
RFVLGYRSKF	10	Unmodified	_RFVLGYRSKF_					0	0	0			REV__ENSG00000169989|ENST00000304337|TIGD4	REV__ENSG00000169989|ENST00000304337|TIGD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.9117736816406	3	424.911902	1271.71388	0.055622	2.3634E-05	-0.47443	-0.00020159	-0.4188	-0.00017795	424.91157912740755	36.351	1.2664	36.351	35.719	36.985	0					66	45	2	0	0	0	0.27239	1	7372	7372		23.801	3.3865	1	477590	+		37220	17557	21882	21883	45001	45001					0.08888777796619252
RFVNVVPTF	9	Unmodified	_RFVNVVPTF_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.806396484375	2	539.805834	1077.59712	0.48702	0.00026289	0.19483	0.00010517	0.68185	0.00036807	539.8061843010686	62.168	1.415	62.168	61.81	63.225	0					180	52	7	0	0	0	0.0059482	1	15302	15302		85.642	29.464	1	9475400			37221	4893	21883	21884	45002	45002					0.06142039576843672
RFVNVVPTF	9	Unmodified	_RFVNVVPTF_					0	0	0		ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	ENSG00000149806|ENST00000529639|FAU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.806396484375	2	539.805834	1077.59712	0.49082	0.00026495	0.099841	5.3895E-05	0.59066	0.00031884	539.8062606939728	62.142	1.4597	62.134	61.757	63.217	-0.0085564					186	53	6	0	0	0	0.03069	1	15289	15289		60.074	16.302	1	9706700			37222	4893	21883	21884	45003	45003					0.06142039576843672
RFVSYSTVTFN	11	Unmodified	_RFVSYSTVTFN_					0	0	0			REV__ENST00000504087.5_1_4:125631708-125631801:-|nuORF	REV__ENST00000504087.5_1_4:125631708-125631801:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.8912658691406	3	440.890944	1319.651	0.10304	4.5427E-05	0.61252	0.00027005	0.71555	0.00031548	440.89105667104303	103.94	0.19395	103.94	103.91	104.1	-0.0011063					27	26	2	0	0	0	0.45422	1	27630	27630		4.1166	0	1	806200	+		37223	21728	21884	21885	45004	45004					0.003961672179229936
RFVTQLSR	8	Unmodified	_RFVTQLSR_					0	0	0		ENST00000487863.5_1_19:53057832-53058279:+|nuORF	ENST00000487863.5_1_19:53057832-53058279:+|nuORF	ENST00000487863.5_1_19:53057832-53058279:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.79345703125	2	503.793258	1005.57196	0.33765	0.0001701	0.047383	2.3871E-05	0.38503	0.00019397	503.79319011437804	26.218	0.81672	26.196	25.97	26.786	-0.022238					58	28	3	0	0	0	0.37071	1	4326	4326		22.736	0.078198	1	622240			37224	11127	21885	21886	45005	45005					0.06939984774282948
RFWFLMYPFRF	11	Unmodified	_RFWFLMYPFRF_					0	0	0		GPR174|p.I241Ffs*12|1|0.43|ENSG00000147138|chrX:79171727-79171727|A/-|frameshift_variant;ENSG00000147138|ENST00000645147|GPR174	GPR174|p.I241Ffs*12|1|0.43|ENSG00000147138|chrX:79171727-79171727|A/-|frameshift_variant	GPR174|p.I241Ffs*12|1|0.43|ENSG00000147138|chrX:79171727-79171727|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2469787597656	4	403.208876	1608.8064	-0.092417	-3.7264E-05	1.1548	0.00046562	1.0624	0.00042835	403.20945457061805	33.324	0.32849	33.39	33.182	33.51	0.06636					15	11	2	0	0	0	0.33334	1	6447	6447		1.2148	0.76031	1	61426			37225	4749	21886	21887	45006	45006					0.02634539538462377
RFWWRRRKKIM	11	Unmodified	_RFWWRRRKKIM_					0	0	0			REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF	REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.9949951171875	3	554.992784	1661.95652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.775	1	99.775	99.275	100.27	0								0	0	0	0.3823	1	26683	26683		0	0	1		+		37226	19460	21887	21888	45007	45007					0.1520232432078501
RFYDRRFLK	9	Unmodified	_RFYDRRFLK_					0	0	0		ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5;ENST00000359944.10_1_3:179322640-179341825:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7801208496094	3	434.247285	1299.72002	0.099799	4.3337E-05	0.8479	0.0003682	0.9477	0.00041154	434.2478124520417	29.288	1.4913	29.288	28.817	30.309	0					130	53	5	0	0	0	0.23622	1	5212	5212		22.775	13.231	1	2975900			37227	3979	21888	21889	45008	45008					0.08215296028106422
RFYDRRFLK	9	Unmodified	_RFYDRRFLK_					0	0	0		ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5;ENST00000359944.10_1_3:179322640-179341825:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7801513671875	3	434.247285	1299.72002	0.0050661	2.2E-06	0.83849	0.00036411	0.84355	0.00036631	434.24761684442007	29.23	1.7779	29.242	28.645	30.423	0.012266					162	61	5	0	0	0	0.24533	1	5194	5194		18.721	12.938	1	2657300			37228	3979	21888	21889	45009	45009					0.08215296028106422
RFYDRRFLK	9	Unmodified	_RFYDRRFLK_					0	0	0		ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5;ENST00000359944.10_1_3:179322640-179341825:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7803955078125	3	434.247285	1299.72002	-0.25681	-0.00011152	0.91732	0.00039835	0.66051	0.00028683	434.24779815664726	29.357	1.7321	29.37	28.619	30.351	0.013475					159	60	4	0	0	0	0.20521	1	5249	5249		24.882	15.905	1	2690000			37229	3979	21888	21889	45010	45010					0.08215296028106422
RFYIPQKLF	9	Unmodified	_RFYIPQKLF_					0	0	0			REV__Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|82|3|anti-sense	REV__Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|82|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.227783203125	3	404.569365	1210.68626	-0.19133	-7.7404E-05	0.049081	1.9857E-05	-0.14224	-5.7548E-05	404.569249612848	59.345	0.62195	59.345	58.968	59.59	0					46	21	3	0	0	0	0.33018	1	14447	14447		2.4985	0	1	209130	+		37230	22697	21889	21890	45011	45011					0.08934874536362258
RFYWWAHL	8	Unmodified	_RFYWWAHL_					0	0	0			REV__ENSG00000204007|ENST00000371763|GLT6D1	REV__ENSG00000204007|ENST00000371763|GLT6D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.2675170898438	2	589.798343	1177.58213	0.080605	4.7541E-05	-2.5534	-0.001506	-2.4728	-0.0014584	589.7953897512446	14.219	0.59888	14.219	13.992	14.591	0					62	20	5	0	0	0	0.34434	1	766	766		0.79363	0.10326	1	232310	+		37231	18915	21890	21891	45012	45012					0.0004459249948922661
RGARGRPERKV	11	Unmodified	_RGARGRPERKV_					0	0	0		ENST00000526183.5_1_8:145724106-145726142:+|nuORF	ENST00000526183.5_1_8:145724106-145726142:+|nuORF	ENST00000526183.5_1_8:145724106-145726142:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.3851928710938	2	641.384168	1280.75378	0.61802	0.00039639	-1.029	-0.00065996	-0.41094	-0.00026357	641.384807268107	93.247	1.8269	93.247	92.734	94.561	-0.00051117					305	153	3	0	0	0	0.43149	1	24825	24825		7.1017	1.8048	1	573760			37232	11551	21891	21892	45013	45013					0.12463717519858619
RGARRRLRSWQ	11	Unmodified	_RGARRRLRSWQ_					0	0	0		ENST00000343028.8_3_12:27167184-27167292:-|nuORF	ENST00000343028.8_3_12:27167184-27167292:-|nuORF	ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.28338623046875	3	481.283503	1440.82868	0.16098	7.7477E-05	-0.084044	-4.0449E-05	0.076937	3.7028E-05	481.28337324082213	91.743	1.505	91.743	91.163	92.668	0					460	110	5	0	0	0	0.47713	1	24462	24462		1.1098	0	1	2919000			37233	9539	21892	21893	45014	45014					0.12589900051102632
RGARRRLRSWQ	11	Unmodified	_RGARRRLRSWQ_					0	0	0		ENST00000343028.8_3_12:27167184-27167292:-|nuORF	ENST00000343028.8_3_12:27167184-27167292:-|nuORF	ENST00000343028.8_3_12:27167184-27167292:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.28350830078125	3	481.283503	1440.82868	0.24196	0.00011645	-0.091805	-4.4184E-05	0.15015	7.2267E-05	481.28335677385866	91.829	1.6064	91.919	91.143	92.749	0.090668					418	111	4	0	0	0	0.46704	1	24326	24326		2.4348	2.4348	1	3408400			37234	9539	21892	21893	45015	45015					0.12589900051102632
RGAWLLKL	8	Unmodified	_RGAWLLKL_					0	0	0			REV__ENST00000577142.1_1_17:79649546-79649603:-|nuORF	REV__ENST00000577142.1_1_17:79649546-79649603:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.80535888671875	2	478.805637	955.596721	-1.0027	-0.00048011	1.4237	0.00068168	0.42099	0.00020157	478.8061890953445	34.878	0.93799	34.878	34.528	35.466	0					62	33	2	0	0	0	0.45942	1	6904	6904		2.5775	0	1	223880	+		37235	22456	21893	21894	45016	45016					0.11714664647661266
RGDLCYLLT	9	Unmodified	_RGDLCYLLT_					0	0	0		nc|ENSG00000176994|Q8TEV9-2|SMCR8;ENSG00000176994|ENST00000406438|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3016967773438	2	527.273509	1052.53247	0.83779	0.00044174	0.93067	0.00049072	1.7685	0.00093246	527.7760706644335	78.533	1.194	78.533	78.144	79.338	0					86	47	3	0	0	0	0.24688	1	20248	20248		14.838	0	1	210170			37236	6956	21894	21895	45017	45017					0.008300967085460798
RGDLCYLLT	9	Unmodified	_RGDLCYLLT_					0	0	0		nc|ENSG00000176994|Q8TEV9-2|SMCR8;ENSG00000176994|ENST00000406438|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	527.273509	1052.53247	0.95253	0.00050224	0.78376	0.00041326	1.7363	0.0009155	527.2734686526792	78.456	1.0437	78.425	77.87	78.914	-0.030434	-0.054132	-8.877E-05	NaN	14.838	73	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195450			37237	6956	21894	21895							0.008300967085460798
RGEAHLPGACF	11	Unmodified	_RGEAHLPGACF_					0	0	0		ENST00000544358.5_1_12:123462594-123463082:+|nuORF;ENST00000540866.2_1_12:123462785-123463082:+|nuORF;ENST00000545612.5_1_12:123459581-123463082:+|nuORF	ENST00000544358.5_1_12:123462594-123463082:+|nuORF	ENST00000544358.5_1_12:123462594-123463082:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.3088989257812	2	579.279657	1156.54476	0.52688	0.00030521	-3.604	-0.0020877	-3.0771	-0.0017825	579.2776336096116	50.962	0.55843	51.009	50.713	51.271	0.046577					28	20	2	0	0	0	0.30814	1	11790	11790		18.373	5.3306	1	197740			37238	11727	21895	21896	45018	45018					-0.027248668284300948
RGERAPAL	8	Unmodified	_RGERAPAL_					0	0	0			REV__ENST00000485071.2_1_7:100172732-100173215:-|nuORF	REV__ENST00000485071.2_1_7:100172732-100173215:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.2508239746094	2	435.251226	868.487899	-0.13187	-5.7398E-05	-0.032972	-1.4351E-05	-0.16484	-7.1749E-05	435.25105337760704	69.122	2.4265	69.122	67.783	70.209	0					208	88	3	0	0	0	0.45169	1	17532	17532		5.2307	5.2307	1	1167900	+		37239	21539	21896	21897	45019	45019					0.048394536773685104
RGERAPAL	8	Unmodified	_RGERAPAL_					0	0	0			REV__ENST00000485071.2_1_7:100172732-100173215:-|nuORF	REV__ENST00000485071.2_1_7:100172732-100173215:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.25091552734375	2	435.251226	868.487899	-0.019216	-8.3639E-06	-0.2246	-9.7757E-05	-0.24382	-0.00010612	435.25100893215125	68.817	1.8957	68.889	68.383	70.279	0.071938					127	68	2	0	0	0	0.4397	2	17494	17494;17589		9.3474	0	1	1228300	+		37240	21539	21896	21897	45020;45021	45020					0.048394536773685104
RGERAPAL	8	Unmodified	_RGERAPAL_					0	0	0			REV__ENST00000485071.2_1_7:100172732-100173215:-|nuORF	REV__ENST00000485071.2_1_7:100172732-100173215:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2507629394531	2	435.251226	868.487899	-0.084475	-3.6768E-05	-0.094405	-4.109E-05	-0.17888	-7.7858E-05	435.2510260076979	69.19	1.906	69.171	68.344	70.25	-0.019524					190	68	3	0	0	0	0.45169	1	17508	17508		5.2307	0	1	1262500	+		37241	21539	21896	21897	45022	45022					0.048394536773685104
RGERPALA	8	Unmodified	_RGERPALA_					0	0	0			REV__ENST00000527236.2_8:145437923-145438016:+|nuORF	REV__ENST00000527236.2_8:145437923-145438016:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.2510070800781	2	435.251226	868.487899	-0.13187	-5.7398E-05	-0.032972	-1.4351E-05	-0.16484	-7.1749E-05	435.25105337760704	69.122	2.4265	69.122	67.783	70.209	0					208	88	3	0	0	0	0.45169	1	17435	17435		5.2307	0	1	1167900	+		37242	21972	21897	21898	45023	45023					0.04839453677357142
RGERPALA	8	Unmodified	_RGERPALA_					0	0	0			REV__ENST00000527236.2_8:145437923-145438016:+|nuORF	REV__ENST00000527236.2_8:145437923-145438016:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.25091552734375	2	435.251226	868.487899	-0.019216	-8.3639E-06	-0.2246	-9.7757E-05	-0.24382	-0.00010612	435.25100893215125	68.817	1.8957	68.889	68.383	70.279	0.071938					127	68	2	0	0	0	0.45169	1	17639	17639		5.2307	0	1	1228300	+		37243	21972	21897	21898	45024	45024					0.04839453677357142
RGERRRRRRRR	11	Unmodified	_RGERRRRRRRR_					0	0	0			REV__ENST00000083182.7_1_17:58603276-58603570:-|nuORF	REV__ENST00000083182.7_1_17:58603276-58603570:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7886962890625	3	537.335483	1608.98462	0.17374	9.3359E-05	-2.8817	-0.0015485	-2.708	-0.0014551	537.3328752767837	31.496	0.50037	31.538	31.183	31.683	0.042364					24	17	2	0	0	0	0.33351	1	5866	5866		0.094841	0	1	311620	+		37244	19381	21898	21899	45025	45025					0.20448783345068478
RGFTTLARPIS	11	Unmodified	_RGFTTLARPIS_					0	0	0		ENST00000429241.1_1:144283121-144311511:-|nuORF	ENST00000429241.1_1:144283121-144311511:-|nuORF	ENST00000429241.1_1:144283121-144311511:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.243408203125	3	406.903295	1217.68806	0.08432	3.431E-05	-0.31564	-0.00012844	-0.23132	-9.4126E-05	406.9031325146304	44.145	0.92837	44.222	43.947	44.876	0.077518					76	34	3	0	0	0	0.33085	1	9745	9745		8.2864	0.80937	1	611730			37245	10447	21899	21900	45026	45026					0.08791883554317792
RGGEPLLK	8	Unmodified	_RGGEPLLK_					0	0	0		ENSG00000196549|ENST00000360490|MME;MME|p.Q258Hfs*9|1|0.05|ENSG00000196549|chr3:155138154-155138155|-/T|frameshift_variant;MME|p.E259Vfs*25|1|0.05|ENSG00000196549|chr3:155138156-155138157|-/TACTTAAAATTTATTTTCATTTCAATATT|frameshift_variant	ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.590576171875	2	435.263802	868.513051	-0.046615	-2.029E-05	0.23603	0.00010274	0.18942	8.2447E-05	435.2638857576758	39.499	0.54881	39.598	39.319	39.868	0.099403					27	19	2	0	0	0	0.31088	1	8298	8298		28.487	0	1	111680			37246	7878	21900	21901	45027	45027					0.07353508479957327
RGGGGGGG	8	Unmodified	_RGGGGGGG_					0	0	0		ENSG00000169857|ENST00000306730|AVEN;HIC1|p.E402Rfs*51|1|0.62|ENSG00000177374|chr17:2057836-2057836|G/-|frameshift_variant;nc|ENSG00000100106|Q9H2D6-6|TRIOBP;nc|ENSG00000136450|Q07955-2|SRSF1;ENSG00000136527|ENST00000453386|TRA2B;ENSG00000174279|ENST00000308618|EVX2;ENSG00000136450|ENST00000258962|SRSF1;CON__Q6IFZ6;CON__Q3TTY5;ENSG00000177374|ENST00000619757|HIC1;nc|ENSG00000177374|Q14526|HIC1;ENST00000371142.8_1_10:98346624-98346687:-|nuORF;nc|ENSG00000136450|Q07955-3|SRSF1;ENST00000372324.5_1_1:44445001-44445064:+|nuORF;ENST00000508237.5_1_17:47399842-47439344:-|nuORF;ENST00000299633.6_1_15:83876364-83876475:-|nuORF;ENST00000406875.7_1_7:139257479-139257596:-|nuORF;ENST00000605920.1_1_10:81586022-81586202:+|nuORF;ENST00000313806.8_1_21:35987155-35987341:-|nuORF;ENST00000430262.2_1_17:47395344-47439458:-|nuORF;ENST00000238855.11_1_2:64751466-64751667:+|nuORF;ENST00000258111.4_1_12:70760395-70760632:+|nuORF;ENST00000426595.1_1_7:55955154-55973975:+|nuORF;ENST00000555993.6_1_14:71267787-71275967:-|nuORF;ENST00000578430.1_1_17:56083680-56084618:-|nuORF;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000103489|ENST00000261381|XYLT1;nc|ENSG00000160201|Q01081-4|U2AF1;nc|ENSG00000160201|Q01081-2|U2AF1;ENSG00000160201|ENST00000291552|U2AF1;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38881942-38884127:-|nuORF;ENST00000431312.2_1_22:38881942-38884127:-|nuORF;ENSG00000105202|ENST00000221801|FBL;ENST00000599159.1_1_19:40329665-40336940:-|nuORF;ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;ENST00000485963.5_1_22:21152870-21213097:-|nuORF;ENSG00000136026|ENST00000378026|CKAP4;nc|ENSG00000105784|Q96NL0-4|RUNDC3B;ENSG00000105784|ENST00000394654|RUNDC3B;nc|ENSG00000105784|Q96NL0|RUNDC3B;RUNDC3B|p.C52Wfs*3|1|0.37|ENSG00000105784|chr7:87650853-87650854|-/G|frameshift_variant;ENST00000470179.5_1_2:197712669-197791463:-|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1;ENSG00000167680|ENST00000586582|SEMA6B;ENSG00000171262|ENST00000397609|FAM98B;ENSG00000138606|ENST00000690270|SHF;ENSG00000164742|ENST00000297323|ADCY1;ENST00000491491.1_1_13:77900653-77900983:-|nuORF	REV__CON__P04264;ENSG00000103489|ENST00000261381|XYLT1;nc|ENSG00000160201|Q01081-4|U2AF1;nc|ENSG00000100201|Q92841-1|DDX17;ENSG00000105202|ENST00000221801|FBL;ENSG00000241973|ENST00000255882|PI4KA;ENSG00000136026|ENST00000378026|CKAP4;nc|ENSG00000105784|Q96NL0-4|RUNDC3B;ENST00000470179.5_1_2:197712669-197791463:-|nuORF;nc|ENSG00000109534|Q9NY12-2|GAR1;REV__ENSG00000168772|ENST00000394767|CXXC4;REV__nc|ENSG00000118058|Q03164-2|KMT2A;ENSG00000167680|ENST00000586582|SEMA6B;ENSG00000171262|ENST00000397609|FAM98B;ENSG00000138606|ENST00000690270|SHF;ENSG00000164742|ENST00000297323|ADCY1;ENST00000491491.1_1_13:77900653-77900983:-|nuORF;REV__nc|ENSG00000160201|Q01081-4|U2AF1;REV__nc|ENSG00000174953|Q9H2U1-3|DHX36;REV__ENST00000323061.5_1_4:89618468-89618519:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.7760620117188	1	574.269198	573.261922	0.11201	6.4326E-05	-3.3221	-0.0019078	-3.2101	-0.0018435	574.2679772335556	23.913	0.41873	23.913	23.829	24.248	0					19	14	2	0	0	0	0.34445	1	3679	3679		0	0	1	29895		+	37247	8538;14997;13252;1544;1954;3935;2024;6531;6198;16886;11181;5872;4163;2257;17864;10863;5444;1837;17477;19980	21901	21902	45028	45028					-0.041778704418561574
RGHFEEEK	8	Unmodified	_RGHFEEEK_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2488403320312	2	516.24888	1030.48321	0.01376	7.1038E-06	-0.32851	-0.00016959	-0.31475	-0.00016249	516.2488061646651	14.91	1.009	14.8	14.303	15.312	-0.10982					83	35	4	0	0	0	0.46491	1	899	899		0.69038	0.69038	1	921990			37248	4052	21902	21903	45029	45029					-0.030814752560672787
RGHRGKAVF	9	Unmodified	_RGHRGKAVF_					0	0	0		nc|ENSG00000166532|Q9ULI2-2|RIMKLB;ENST00000408914.2_1_21:37422526-37423618:+|nuORF;ENSG00000166532|ENST00000535829|RIMKLB;ENSG00000177181|ENST00000431473|RIMKLA	nc|ENSG00000166532|Q9ULI2-2|RIMKLB	nc|ENSG00000166532|Q9ULI2-2|RIMKLB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7699584960938	2	514.299042	1026.58353	0.27933	0.00014366	2.1106	0.0010855	2.3899	0.0012291	514.2986309207661	88.668	0.68446	88.665	88.266	88.951	-0.0028381					58	29	3	0	0	0	0.25879	1	23299	23299		4.756	0.42677	1	163980			37249	6091	21903	21904	45030	45030					0.07130226588265032
RGHRRREP	8	Unmodified	_RGHRRREP_					0	0	0			REV__ENST00000249883.9_1_3:134090198-134093306:-|nuORF	REV__ENST00000249883.9_1_3:134090198-134093306:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.30517578125	2	532.302647	1062.59074	0.46195	0.0002459	2.2449	0.001195	2.7069	0.0014409	532.3037352247431	17.423	0.29131	17.362	17.269	17.56	-0.060429					16	9	2	0	0	0	0.46491	1	1678	1678		0.69038	0	1	34194	+		37250	19517	21904	21905	45031	45031					0.06194959188701432
RGHSLSGLGK	10	Unmodified	_RGHSLSGLGK_					0	0	0			REV__ENSG00000111961|ENST00000367467|SASH1	REV__ENSG00000111961|ENST00000367467|SASH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2337341308594	2	506.28834	1010.56213	0.119	6.0247E-05	4.2402	0.0021467	4.3591	0.002207	506.7929503736858	18.887	0.79171	18.769	18.582	19.374	-0.11739					36	27	2	0	0	0	0.32072	1	2211	2211		2.9952	0.69251	1	65583	+		37251	14747	21905	21906	45032	45032					0.05726796768908571
RGIHFGLSDGE	11	Unmodified	_RGIHFGLSDGE_					0	0	0		ENST00000560634.1_1_15:84865513-84865773:+|nuORF	ENST00000560634.1_1_15:84865513-84865773:+|nuORF	ENST00000560634.1_1_15:84865513-84865773:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8021850585938	2	594.293819	1186.57309	0.27152	0.00016136	0.12611	7.4947E-05	0.39763	0.00023631	594.2937791602108	33.931	0.58047	33.997	33.799	34.38	0.0667					29	20	3	0	0	0	0.3327	1	6732	6732		2.7352	0.23671	1	254390			37252	11901	21906	21907	45033	45033					-0.012738456474835402
RGILLFFLG	9	Unmodified	_RGILLFFLG_					0	0	0			REV__ENST00000428226.5_3_2:220092732-220094285:-|nuORF	REV__ENST00000428226.5_3_2:220092732-220094285:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8195190429688	2	518.32112	1034.62769	0.59788	0.00030989	-1.0292	-0.00053343	-0.43128	-0.00022354	518.3205239180562	83.029	1.044	83.029	82.383	83.427	0					70	39	3	0	0	0	0.25879	1	21740	21740		4.756	0	1	329370	+		37253	20919	21907	21908	45034	45034					0.11175817961884604
RGIPGRRRRD	10	Unmodified	_RGIPGRRRRD_					0	0	0			REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.868896484375	2	619.868686	1237.72282	-0.13349	-8.2747E-05	1.6785	0.0010404	1.545	0.00095768	619.8694468301202	98.928	0.23272	98.928	98.867	99.1	0					38	27	2	0	0	0	0.39935	1	26514	26514		3.5965	0	1	105560	+		37254	21167	21908	21909	45035	45035					0.11346564205632603
RGIPGRRRRD	10	Unmodified	_RGIPGRRRRD_					0	0	0			REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3717041015625	2	619.868686	1237.72282	0.051889	3.2164E-05	2.4264	0.001504	2.4783	0.0015362	619.8694063718847	93.874	0.35543	93.961	93.749	94.104	0.08667					38	27	2	0	0	0	0.39935	1	24980	24980		3.5965	0	1	154910	+		37255	21167	21908	21909	45036	45036					0.11346564205632603
RGIPGRRRRD	10	Unmodified	_RGIPGRRRRD_					0	0	0			REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8684692382812	2	619.868686	1237.72282	-0.10326	-6.401E-05	0.93664	0.00058059	0.83338	0.00051658	619.8686424901246	102.45	0.15616	102.47	102.4	102.55	0.016685					34	22	2	0	0	0	0.39935	1	27270	27270		3.5965	0	1	89933	+		37256	21167	21908	21909	45037	45037					0.11346564205632603
RGIPGRRRRD	10	Unmodified	_RGIPGRRRRD_					0	0	0			REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8690185546875	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.366	1	95.444	94.944	95.944	0.077408								0	0	0	0.37157	1	25471	25471		5.7319	0	1		+		37257	21167	21908	21909	45038	45038					0.11346564205632603
RGIPGRRRRD	10	Unmodified	_RGIPGRRRRD_					0	0	0			REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8684692382812	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.129	1	98.191	97.691	98.691	0.061516								0	0	0	0.38166	1	26259	26259		1.4819	0	1		+		37258	21167	21908	21909	45039	45039					0.11346564205632603
RGIPGRRRRD	10	Unmodified	_RGIPGRRRRD_					0	0	0			REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8695068359375	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.62	1	102.64	102.14	103.14	0.016685								0	0	0	0.37664	1	27297	27297		3.5965	0	1		+		37259	21167	21908	21909	45040	45040					0.11346564205632603
RGIPGRRRRD	10	Unmodified	_RGIPGRRRRD_					0	0	0			REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3705444335938	2	619.868686	1237.72282	0.15071	9.3423E-05	0.76289	0.00047289	0.91361	0.00056632	619.8691523294976	99.566	0.53395	99.559	99.358	99.892	-0.006897					120	68	2	0	0	0	0.39935	2	26648	26630;26648		3.5965	0	1	135490	+		37260	21167	21908	21909	45041;45042	45042					0.11346564205632603
RGIPGRRRRD	10	Unmodified	_RGIPGRRRRD_					0	0	0			REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	REV__ENST00000455989.1_1_7:115850593-115889085:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	619.868686	1237.72282	-0.13349	-8.2747E-05	1.6785	0.0010404	1.545	0.00095768	619.8694468301202	98.928	0.23272	98.928	98.867	99.1	0	0.087707	1.1365E-05	NaN	3.5965	38	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105560	+		37261	21167	21908	21909							0.11346564205632603
RGKQFLSF	8	Unmodified	_RGKQFLSF_					0	0	0		nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7;ENST00000505692.1_1_4:122780107-122782831:-|nuORF;ENST00000502444.1_1_4:122782546-122791468:-|nuORF	nc|ENSG00000138686|Q8IWZ6-2|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.19830322265625	2	491.777077	981.5396	0.32264	0.00015867	-0.42253	-0.00020779	-0.099887	-4.9122E-05	491.7763835580665	67.003	1.1668	67.087	66.327	67.493	0.083832					63	41	2	0	0	0	0.34247	1	16645	16645		8.5933	1.304	1	398870			37262	4179	21909	21910	45043	45043					0.04809197371287155
RGKRRSELPL	10	Unmodified	_RGKRRSELPL_					0	0	0			REV__ENSG00000012171|ENST00000616701|SEMA3B	REV__ENSG00000012171|ENST00000616701|SEMA3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3698120117188	2	606.370195	1210.72584	0.54971	0.00033333	-0.35687	-0.00021639	0.19284	0.00011693	606.3698124394905	86.859	2.3907	86.946	86.728	89.119	0.08709					235	111	4	0	0	0	0.41469	1	23373	23373		0.45834	0.45834	1	1359800	+		37263	13438	21910	21911	45044	45044					0.12890394539795125
RGKSGGVPLS	10	Unmodified	_RGKSGGVPLS_					0	0	0			REV__nc|ENSG00000259956|Q8NDT2-2|RBM15B	REV__nc|ENSG00000259956|Q8NDT2-2|RBM15B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2774963378906	2	479.277441	956.540328	0.20707	9.9242E-05	0.063652	3.0507E-05	0.27072	0.00012975	479.27735198558173	73.913	2.9622	73.965	73.226	76.188	0.052361					318	106	3	0	0	0	0.35231	2	18951	18951;19394		12.241	5.2969	1	5051400	+		37264	19273	21911	21912	45045;45046	45045					0.06031992020314192
RGKSGGVPLS	10	Unmodified	_RGKSGGVPLS_					0	0	0			REV__nc|ENSG00000259956|Q8NDT2-2|RBM15B	REV__nc|ENSG00000259956|Q8NDT2-2|RBM15B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2773132324219	2	479.277441	956.540328	0.079124	3.7922E-05	-0.27951	-0.00013396	-0.20038	-9.6039E-05	479.2771335875603	76.592	0.79053	76.646	76.189	76.98	0.053413					76	27	3	0	0	0	0.35637	3	19780	19691;19736;19780		11.495	2.1116	1	653680	+		37265	19273	21911	21912	45047;45048;45049	45049					0.06031992020314192
RGKSGGVPLS	10	Unmodified	_RGKSGGVPLS_					0	0	0			REV__nc|ENSG00000259956|Q8NDT2-2|RBM15B	REV__nc|ENSG00000259956|Q8NDT2-2|RBM15B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2774963378906	2	479.277441	956.540328	0.31867	0.00015273	-0.019674	-9.4295E-06	0.299	0.0001433	479.27730538761404	74.074	3.3857	74.044	73.152	76.538	-0.030663					252	123	3	0	0	0	0.39009	1	19200	19200		5.2969	5.2969	1	4993700	+		37266	19273	21911	21912	45050	45050					0.06031992020314192
RGKSGGVPLS	10	Unmodified	_RGKSGGVPLS_					0	0	0			REV__nc|ENSG00000259956|Q8NDT2-2|RBM15B	REV__nc|ENSG00000259956|Q8NDT2-2|RBM15B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.27740478515625	2	479.277441	956.540328	0.39285	0.00018828	-0.28276	-0.00013552	0.11009	5.2763E-05	479.2772159021679	75.409	1.3658	75.378	75.005	76.37	-0.031487					98	50	2	0	0	0	0.37454	1	19537	19537		8.1555	0.8663	1	2627700	+		37267	19273	21911	21912	45051	45051					0.06031992020314192
RGKSGGVPLS	10	Unmodified	_RGKSGGVPLS_					0	0	0			REV__nc|ENSG00000259956|Q8NDT2-2|RBM15B	REV__nc|ENSG00000259956|Q8NDT2-2|RBM15B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.277099609375	2	479.277441	956.540328	0.42985	0.00020602	-0.96514	-0.00046257	-0.53529	-0.00025655	479.276839940284	76.671	0.61418	76.639	76.346	76.96	-0.031479					42	22	2	0	0	0	0.37751	1	19714	19714		7.609	0.88579	1	664690	+		37268	19273	21911	21912	45052	45052					0.06031992020314192
RGLHFHKDYF	10	Unmodified	_RGLHFHKDYF_					0	0	0		nc|ENSG00000243708|P0C869-7|PLA2G4B;nc|ENSG00000243708|P0C869-8|PLA2G4B;nc|ENSG00000243708|P0C869-6|PLA2G4B;nc|ENSG00000243708|P0C869-4|PLA2G4B;ENSG00000243708|ENST00000458483|PLA2G4B	nc|ENSG00000243708|P0C869-7|PLA2G4B	nc|ENSG00000243708|P0C869-7|PLA2G4B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.54620361328125	3	440.55964	1318.65709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.072	1	27.072	26.572	27.572	0								0	0	0	0.37523	1	4545	4545		4.1895	0.86986	1				37269	12970	21912	21913	45053	45053					0.010507302400810659
RGLIIKQRN	9	Unmodified	_RGLIIKQRN_					0	0	0		L1MEf_dup1694|chr2:208825398-208826842:+|2.073452806218134|0.1080183910784605|4.26|525.0|36|2|sense	L1MEf_dup1694|chr2:208825398-208826842:+|2.073452806218134|0.1080183910784605|4.26|525.0|36|2|sense	L1MEf_dup1694|chr2:208825398-208826842:+|2.073452806218134|0.1080183910784605|4.26|525.0|36|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3191528320312	2	549.348732	1096.68291	0.20931	0.00011498	-1.226	-0.0006735	-1.0167	-0.00055851	549.3479774511922	12.293	0.14589	12.196	12.122	12.268	-0.096607					7	4	2	0	0	0	0.26257	1	99	99		0.52476	0	1	24086			37270	12470	21913	21914	45054	45054					0.13843624482365158
RGLKQKDVF	9	Unmodified	_RGLKQKDVF_					0	0	0			REV__nc|ENSG00000198797|Q9C0B6-2|BRINP2	REV__nc|ENSG00000198797|Q9C0B6-2|BRINP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.745849609375	2	545.822015	1089.62948	0.73615	0.0004018	3.1953	0.0017441	3.9315	0.0021459	545.8231476737603	72.167	0.54024	72.223	71.922	72.462	0.056572					31	19	2	0	0	0	0.25417	1	18298	18298		8.5933	3.3626	1	142550	+		37271	18865	21914	21915	45055	45055					0.08824826979844147
RGLNSKQH	8	Unmodified	_RGLNSKQH_					0	0	0		nc|ENSG00000136492|Q9BX63-2|BRIP1;ENSG00000136492|ENST00000259008|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.7879943847656	2	470.259582	938.504612	-0.058782	-2.7643E-05	2.9055	0.0013664	2.8468	0.0013387	470.2605001059449	17.691	0.37144	17.574	17.323	17.694	-0.11739					18	12	2	0	0	0	0.34367	1	1658	1658		4.3292	1.44	1	20933			37272	3978	21915	21916	45056	45056					0.03289954563331321
RGLPAYLKIF	10	Unmodified	_RGLPAYLKIF_					0	0	0		ENST00000481441.1_1_6:33163678-33163975:-|nuORF	ENST00000481441.1_1_6:33163678-33163975:-|nuORF	ENST00000481441.1_1_6:33163678-33163975:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3438720703125	2	589.358234	1176.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.875	1	97.868	97.368	98.368	-0.0068283								0	0	0	0.37581	1	26209	26209		3.9444	0	1				37273	11030	21916	21917	45057	45057					0.12063161053401927
RGLPWPRRGL	10	Unmodified	_RGLPWPRRGL_					0	0	0			REV__ENSG00000160957|ENST00000617875|RECQL4	REV__ENSG00000160957|ENST00000617875|RECQL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.21551513671875	3	403.243874	1206.70979	-0.073219	-2.9525E-05	-0.073089	-2.9473E-05	-0.14631	-5.8998E-05	403.2440359370363	21.55	0.42659	21.55	21.368	21.795	0					23	14	2	0	0	0	0.3213	1	2921	2921		1.9064	0	1	60978	+		37274	16927	21917	21918	45058	45058					0.11470733093551644
RGLRTKVRLSS	11	Unmodified	_RGLRTKVRLSS_					0	0	0			REV__ENST00000570282.1_1_12:107348804-107349062:-|nuORF	REV__ENST00000570282.1_1_12:107348804-107349062:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.93310546875	3	424.933477	1271.7786	0.2092	8.8895E-05	-1.137	-0.00048316	-0.92782	-0.00039426	424.93290534726856	84.004	0.65967	84.004	83.504	84.163	0					39	25	2	0	0	0	0.48212	1	21979	21979		0.45452	0.29519	1	540140	+		37275	22411	21918	21919	45059	45059					0.15358352602606828
RGLRTKVRLSS	11	Unmodified	_RGLRTKVRLSS_					0	0	0			REV__ENST00000570282.1_1_12:107348804-107349062:-|nuORF	REV__ENST00000570282.1_1_12:107348804-107349062:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	424.933477	1271.7786	0.1054	4.4789E-05	-1.1844	-0.0005033	-1.079	-0.00045851	424.93294215491363	83.948	2.1429	84.026	82.874	85.017	0.077095	0.0073034	-0.00012831	NaN	0.45452	117	84	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	464360	+		37276	22411	21918	21919							0.15358352602606828
RGLRTKVRLSS	11	Unmodified	_RGLRTKVRLSS_					0	0	0			REV__ENST00000570282.1_1_12:107348804-107349062:-|nuORF	REV__ENST00000570282.1_1_12:107348804-107349062:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	424.933477	1271.7786	0.17552	7.4586E-05	-0.99317	-0.00042203	-0.81765	-0.00034745	424.9329470235296	84.042	2.1301	84.026	82.953	85.083	-0.016823	0.0073497	0.00011548	NaN	0.45452	178	90	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	653040	+		37277	22411	21918	21919							0.15358352602606828
RGLRTPSTL	9	Unmodified	_RGLRTPSTL_					0	0	0		ENST00000569860.1_1_2:12856187-12856274:+|nuORF	ENST00000569860.1_1_2:12856187-12856274:+|nuORF	ENST00000569860.1_1_2:12856187-12856274:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7964172363281	2	500.79854	999.582528	0.60502	0.00030299	-0.44872	-0.00022472	0.15629	7.8271E-05	500.79790209397606	84.28	1.8809	84.28	83.859	85.74	0					158	73	4	0	0	0	0.25989	1	21991	21991		14.838	0	1	2938800			37278	12014	21919	21920	45060	45060					0.08271967428709104
RGLRTPSTL	9	Unmodified	_RGLRTPSTL_					0	0	0		ENST00000569860.1_1_2:12856187-12856274:+|nuORF	ENST00000569860.1_1_2:12856187-12856274:+|nuORF	ENST00000569860.1_1_2:12856187-12856274:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.79876708984375	2	500.79854	999.582528	0.5391	0.00026998	1.2193	0.00061064	1.7584	0.00088062	500.79839382098555	86.587	0.8662	86.587	86.072	86.938	0					105	34	4	0	0	0	0.25989	1	22823	22823		14.838	0	1	287250			37279	12014	21919	21920	45061	45061					0.08271967428709104
RGLRTPSTL	9	Unmodified	_RGLRTPSTL_					0	0	0		ENST00000569860.1_1_2:12856187-12856274:+|nuORF	ENST00000569860.1_1_2:12856187-12856274:+|nuORF	ENST00000569860.1_1_2:12856187-12856274:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.3021240234375	2	500.79854	999.582528	0.54847	0.00027468	-0.74734	-0.00037427	-0.19887	-9.9593E-05	500.7978942113068	84.187	1.4366	84.17	83.698	85.135	-0.01683					141	61	4	0	0	0	0.25989	1	21969	21969		14.838	0	1	3310400			37280	12014	21919	21920	45062	45062					0.08271967428709104
RGLRTPSTL	9	Unmodified	_RGLRTPSTL_					0	0	0		ENST00000569860.1_1_2:12856187-12856274:+|nuORF	ENST00000569860.1_1_2:12856187-12856274:+|nuORF	ENST00000569860.1_1_2:12856187-12856274:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	500.79854	999.582528	0.41973	0.0002102	2.1778	0.0010907	2.5976	0.0013009	500.79847093098664	86.488	0.90691	86.573	86.209	87.116	0.084251	-0.019825	0.00084561	NaN	14.838	67	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315860			37281	12014	21919	21920							0.08271967428709104
RGLSRQQFV	9	Unmodified	_RGLSRQQFV_					0	0	0			REV__nc|ENSG00000177338|Q8N7U9-2|LINC00469	REV__nc|ENSG00000177338|Q8N7U9-2|LINC00469	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2847290039062	2	545.809439	1089.60433	0.41905	0.00022872	-1.3641	-0.00074452	-0.94502	-0.0005158	546.3089590769312	57.873	0.30062	57.873	57.828	58.128	0					11	10	2	0	0	0	0.2451	1	13988	13988		15.847	1.9411	1	219410	+		37282	23103	21920	21921	45063	45063					0.06310772177266699
RGLTMRLLIR	10	Unmodified	_RGLTMRLLIR_					0	0	0			REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	614.384765625	2	614.887167	1227.75978	0.24991	0.00015367	-0.50115	-0.00030815	-0.25124	-0.00015448	614.8866767139608	90.132	0.91721	90.223	89.814	90.732	0.090675					106	71	2	0	0	0	0.32054	1	23900	23900		3.2813	3.2813	1	490440	+		37283	21751	21921	21922	45064	45064					0.15501099707194044
RGLTMRLLIR	10	Unmodified	_RGLTMRLLIR_					0	0	0			REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	614.384765625	2	614.887167	1227.75978	0.34985	0.00021512	-0.081463	-5.009E-05	0.26838	0.00016503	614.8866962053714	90.187	0.77809	90.187	89.813	90.591	0.0003891					99	60	2	0	0	0	0.31889	1	23912	23912		6.2058	6.2058	1	469810	+		37284	21751	21921	21922	45065	45065					0.15501099707194044
RGLVQSSRPP	10	Unmodified	_RGLVQSSRPP_					0	0	0			REV__ENST00000535614.5_1_12:122237433-122239328:-|nuORF	REV__ENST00000535614.5_1_12:122237433-122239328:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3251953125	2	548.814722	1095.61489	0.27538	0.00015113	-0.056438	-3.0974E-05	0.21894	0.00012016	548.8147872829787	25.842	0.98948	25.804	25.5	26.489	-0.038671					44	34	2	0	0	0	0.31876	1	4114	4114		7.1017	1.3699	1	100740	+		37285	22070	21922	21923	45066	45066					0.0709075483171091
RGLVQSSRPP	10	Unmodified	_RGLVQSSRPP_					0	0	0			REV__ENST00000535614.5_1_12:122237433-122239328:-|nuORF	REV__ENST00000535614.5_1_12:122237433-122239328:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	548.814722	1095.61489	0.25372	0.00013925	0.27422	0.0001505	0.52794	0.00028974	548.8147559628685	25.785	0.99464	25.785	25.504	26.499	0	-0.0095144	0.00036957	NaN	7.1017	50	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199620	+		37286	22070	21922	21923							0.0709075483171091
RGMEKSLFVFT	11	Unmodified	_RGMEKSLFVFT_					0	0	0		nc|ENSG00000106100|Q9Y239-3|NOD1;ENSG00000106100|ENST00000222823|NOD1	nc|ENSG00000106100|Q9Y239-3|NOD1	nc|ENSG00000106100|Q9Y239-3|NOD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.56195068359375	3	438.900674	1313.68019	-0.27598	-0.00012113	-0.021864	-9.5961E-06	-0.29784	-0.00013072	438.90059475851865	13.106	0.38765	13.106	12.977	13.365	0					30	13	4	0	0	0	0.33303	1	311	311		2.4348	0.69251	1	164570			37287	2057	21923	21924	45067	45067					0.03589988242515574
RGMEKSLFVFT	11	Unmodified	_RGMEKSLFVFT_					0	0	0		nc|ENSG00000106100|Q9Y239-3|NOD1;ENSG00000106100|ENST00000222823|NOD1	nc|ENSG00000106100|Q9Y239-3|NOD1	nc|ENSG00000106100|Q9Y239-3|NOD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	438.900674	1313.68019	-0.34513	-0.00015148	-0.86751	-0.00038075	-1.2126	-0.00053223	438.90173048981563	12.89	0.32606	12.822	12.61	12.936	-0.067496	-0.1926	-0.0010348	NaN	2.4348	11	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9979.7			37288	2057	21923	21924							0.03589988242515574
RGNIIPRG	8	Unmodified	_RGNIIPRG_					0	0	0		nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.27716064453125	2	441.767043	881.519533	-0.027386	-1.2098E-05	-0.10097	-4.4603E-05	-0.12835	-5.6701E-05	441.76696734303573	18.89	0.41503	18.89	18.71	19.125	0					27	14	2	0	0	0	0.45169	1	2045	2045		5.2307	0	1	89666			37289	5531	21924	21925	45068	45068					0.07403446431317207
RGNIIPRG	8	Unmodified	_RGNIIPRG_					0	0	0		nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.27703857421875	2	441.767043	881.519533	-0.04793	-2.1174E-05	-0.034671	-1.5317E-05	-0.082601	-3.649E-05	441.7669796644822	19	0.5171	18.942	18.707	19.224	-0.058174					25	17	2	0	0	0	0.4419	1	2079	2079		8.5933	0	1	79272			37290	5531	21924	21925	45069	45069					0.07403446431317207
RGPKSPNSV	9	Unmodified	_RGPKSPNSV_					0	0	0			REV__nc|ENSG00000169925|Q15059-2|BRD3	REV__nc|ENSG00000169925|Q15059-2|BRD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.7538146972656	2	471.261791	940.509028	0.047979	2.2611E-05	-0.35253	-0.00016613	-0.30455	-0.00014352	471.2615375255771	24.919	0.51374	24.919	24.639	25.153	0					43	17	3	0	0	0	0.28128	1	3840	3840		11.64	0	1	213770	+		37291	17552	21925	21926	45070	45070					0.036394189862335224
RGPMHTLTL	9	Unmodified	_RGPMHTLTL_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2825927734375	2	513.281669	1024.54878	0.31276	0.00016053	0.85273	0.00043769	1.1655	0.00059823	513.2822783972525	71.258	0.45475	71.233	71.025	71.479	-0.024864					30	16	2	0	0	0	0.20626	1	18103	18103		22.736	0	1	522380			37292	5124	21926	21927	45071	45071					0.037492226653057514
RGPMHTLTL	9	Unmodified	_RGPMHTLTL_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.281669	1024.54878	0.35416	0.00018178	1.0012	0.0005139	1.3554	0.00069569	513.2822647502154	71.177	0.46791	71.177	70.963	71.431	0	-0.020281	0.00022706	NaN	22.736	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	722040			37293	5124	21926	21927							0.037492226653057514
RGQGVRVA	8	Unmodified	_RGQGVRVA_					0	0	0			REV__ENST00000518168.5_1_5:179228470-179228931:-|nuORF	REV__ENST00000518168.5_1_5:179228470-179228931:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.7513122558594	2	421.751393	841.488233	0.070738	2.9834E-05	-0.15315	-6.459E-05	-0.08241	-3.4756E-05	421.7513014375822	67.968	2.1611	68.046	67.515	69.676	0.078041					116	77	3	0	0	0	0.45307	1	17061	17061		4.756	0	1	550770	+		37294	16930	21927	21928	45072	45072					0.06114873397223164
RGQRKLAY	8	Unmodified	_RGQRKLAY_					0	0	0			REV__ENSG00000278705|ENST00000377745|H4C2	REV__ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3038635253906	2	496.293425	990.572297	0.42606	0.00021145	1.9715	0.00097843	2.3975	0.0011899	496.2945386003725	72.795	0.38413	72.849	72.681	73.065	0.053833					20	13	2	0	0	0	0.33916	1	18565	18565		26.341	3.605	1	56565	+		37295	16810	21928	21929	45073	45073					0.0766340449412155
RGQTPYVKL	9	Unmodified	_RGQTPYVKL_					0	0	0			REV__ENSG00000169122|ENST00000519262|FAM110B	REV__ENSG00000169122|ENST00000519262|FAM110B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2862548828125	2	531.308741	1060.60293	0.11049	5.8706E-05	0.71661	0.00038074	0.8271	0.00043945	531.3092282333766	38.914	0.54013	38.914	38.649	39.189	0					38	18	3	0	0	0	0.2524	1	8227	8227		11.495	1.4208	1	365560	+		37296	17499	21929	21930	45074	45074					0.07505138088504282
RGRAVQRPLP	10	Unmodified	_RGRAVQRPLP_					0	0	0		nc|ENSG00000088053|Q9HCN6-2|GP6;nc|ENSG00000088053|Q9HCN6|GP6	nc|ENSG00000088053|Q9HCN6-2|GP6	nc|ENSG00000088053|Q9HCN6-2|GP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3512573242188	2	575.351806	1148.68906	0.40299	0.00023186	0.053579	3.0827E-05	0.45657	0.00026269	575.3512740735332	89.84	0.60835	89.93	89.717	90.325	0.090569					100	46	3	0	0	0	0.38233	1	23780	23780		6.7232	6.7232	1	508740			37297	12601	21930	21931	45075	45075					0.12066142713888439
RGRGKKVD	8	Unmodified	_RGRGKKVD_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2774353027344	2	458.277775	914.540997	-0.26815	-0.00012289	-0.4366	-0.00020009	-0.70475	-0.00032297	458.27759060529706	12.541	0.41933	12.541	12.364	12.783	0					23	13	4	0	0	0	0.4396	1	159	159		9.3831	1.2276	1	291340	+		37298	13551	21931	21932	45076	45076					0.08030831460030186
RGRGWPLPFS	10	Unmodified	_RGRGWPLPFS_					0	0	0		ENST00000507562.1_1_5:148725314-148730842:+|nuORF	ENST00000507562.1_1_5:148725314-148730842:+|nuORF	ENST00000507562.1_1_5:148725314-148730842:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8340454101562	2	586.819807	1171.62506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.341	1	82.32	81.82	82.82	-0.020584								0	0	0	0.3629	1	21474	21474		9.3831	0.63772	1				37299	11336	21932	21933	45077	45077					0.04611362556943277
RGRHKKGPL	9	Unmodified	_RGRHKKGPL_					0	0	0			REV__nc|ENSG00000139973|Q17RD7-2|SYT16	REV__nc|ENSG00000139973|Q17RD7-2|SYT16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.31005859375	2	524.827966	1047.64138	0.53804	0.00028238	-3.8654	-0.0020287	-3.3274	-0.0017463	524.8266346050286	96.395	0.11568	96.391	96.301	96.417	-0.0038147					13	10	2	0	0	0	0.33276	1	25781	25781		3.9444	0	1	44368	+		37300	16016	21933	21934	45078	45078					0.1194648851369493
RGRHKKGPL	9	Unmodified	_RGRHKKGPL_					0	0	0			REV__nc|ENSG00000139973|Q17RD7-2|SYT16	REV__nc|ENSG00000139973|Q17RD7-2|SYT16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	524.827966	1047.64138	0.22594	0.00011858	-4.5052	-0.0023645	-4.2793	-0.0022459	524.8263777440923	96.82	0.046104	96.82	96.777	96.823	0	0.19955	4.1698E-05	NaN	3.9444	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26433	+		37301	16016	21933	21934							0.1194648851369493
RGRHKKGPL	9	Unmodified	_RGRHKKGPL_					0	0	0			REV__nc|ENSG00000139973|Q17RD7-2|SYT16	REV__nc|ENSG00000139973|Q17RD7-2|SYT16	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.827966	1047.64138	0.53804	0.00028238	-3.8654	-0.0020287	-3.3274	-0.0017463	524.8266346050286	96.395	0.11568	96.391	96.301	96.417	-0.0038147	-0.22959	0.00071328	NaN	3.9444	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44368	+		37302	16016	21933	21934							0.1194648851369493
RGRKGSGRGTL	11	Unmodified	_RGRKGSGRGTL_					0	0	0			REV__ENSG00000166987|ENST00000355673|MBD6	REV__ENSG00000166987|ENST00000355673|MBD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.7869262695312	2	572.83652	1143.65849	0.41256	0.00023633	-0.24873	-0.00014248	0.16383	9.385E-05	572.8362632045181	86.781	0.46008	86.781	86.506	86.966	0					28	17	2	0	0	0	0.3327	1	22835	22835		2.7352	0.67545	1	134540	+		37303	17356	21934	21935	45079	45079					0.09240364328866235
RGRKKKGHE	9	Unmodified	_RGRKKKGHE_					0	0	0			REV__ENSG00000171490|ENST00000571133|RSL1D1	REV__ENSG00000171490|ENST00000571133|RSL1D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3356323242188	2	548.328331	1094.64211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.81	1	22.81	22.31	23.31	0								0	0	0	0.23852	1	3258	3258		10.074	5.3179	1		+		37304	17641	21935	21936	45080	45080					0.09857283162750718
RGRLLNNKIQ	10	Unmodified	_RGRLLNNKIQ_					0	0	0		ENST00000502619.5_1_5:68856165-68860951:+|nuORF	ENST00000502619.5_1_5:68856165-68860951:+|nuORF	ENST00000502619.5_1_5:68856165-68860951:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3703002929688	2	606.370195	1210.72584	0.64072	0.00038851	-0.095332	-5.7806E-05	0.54539	0.00033071	606.36993872621	86.778	1.4348	86.778	86.149	87.584	0					145	59	4	0	0	0	0.41512	1	22993	22993		1.6526	0	1	1446600			37305	11278	21936	21937	45081	45081					0.12890394539772387
RGRLLNNKIQ	10	Unmodified	_RGRLLNNKIQ_					0	0	0		ENST00000502619.5_1_5:68856165-68860951:+|nuORF	ENST00000502619.5_1_5:68856165-68860951:+|nuORF	ENST00000502619.5_1_5:68856165-68860951:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.370361328125	2	606.370195	1210.72584	0.45985	0.00027884	-0.18945	-0.00011488	0.2704	0.00016396	606.3699776312902	86.955	2.1455	86.949	86.188	88.334	-0.0056229					252	99	4	0	0	0	0.37007	1	22894	22894		14.838	9.9413	1	1359200			37306	11278	21936	21937	45082	45082					0.12890394539772387
RGRNIRQLI	9	Unmodified	_RGRNIRQLI_					0	0	0		ENST00000603247.1_1_13:98128238-98128670:+|nuORF	ENST00000603247.1_1_13:98128238-98128670:+|nuORF	ENST00000603247.1_1_13:98128238-98128670:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.35205078125	2	563.351806	1124.68906	0.43489	0.000245	-0.05904	-3.326E-05	0.37585	0.00021174	563.3518729709311	88.36	0.82	88.449	87.95	88.77	0.089195					67	38	2	0	0	0	0.34536	1	23328	23328		2.0598	0	1	209230			37307	12273	21937	21938	45083	45083					0.13170142713875066
RGRNIRQLI	9	Unmodified	_RGRNIRQLI_					0	0	0		ENST00000603247.1_1_13:98128238-98128670:+|nuORF	ENST00000603247.1_1_13:98128238-98128670:+|nuORF	ENST00000603247.1_1_13:98128238-98128670:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.351806	1124.68906	0.42434	0.00023905	0.073357	4.1326E-05	0.4977	0.00028038	563.3519728744986	88.117	0.85738	88.117	87.844	88.702	0	-0.2228	8.8116E-05	NaN	2.0598	60	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120330			37308	12273	21937	21938							0.13170142713875066
RGRNIRQLI	9	Unmodified	_RGRNIRQLI_					0	0	0		ENST00000603247.1_1_13:98128238-98128670:+|nuORF	ENST00000603247.1_1_13:98128238-98128670:+|nuORF	ENST00000603247.1_1_13:98128238-98128670:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	563.351806	1124.68906	0.43489	0.000245	-0.05904	-3.326E-05	0.37585	0.00021174	563.3518729709311	88.36	0.82	88.449	87.95	88.77	0.089195	0.10883	-6.1056E-05	NaN	2.0598	67	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209230			37309	12273	21937	21938							0.13170142713875066
RGRNIRQLI	9	Unmodified	_RGRNIRQLI_					0	0	0		ENST00000603247.1_1_13:98128238-98128670:+|nuORF	ENST00000603247.1_1_13:98128238-98128670:+|nuORF	ENST00000603247.1_1_13:98128238-98128670:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	563.351806	1124.68906	0.33716	0.00018994	-0.014585	-8.2166E-06	0.32258	0.00018173	563.351936289565	88.457	0.89788	88.454	87.952	88.849	-0.0028381	0.11397	-1.0969E-05	NaN	2.0598	67	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170290			37310	12273	21937	21938							0.13170142713875066
RGRNSRSV	8	Unmodified	_RGRNSRSV_					0	0	0		ENSG00000148840|ENST00000278070|PPRC1;nc|ENSG00000148840|Q5VV67-2|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2770080566406	2	466.262656	930.51076	0.016993	7.9233E-06	1.3794	0.00064315	1.3964	0.00065107	466.2641242378868	29.374	0.68455	29.388	29.14	29.824	0.013474					34	23	2	0	0	0	0.3433	1	5371	5371		6.2058	0	1	66264			37311	4831	21938	21939	45084	45084					0.04272472794843907
RGRRQKSELS	10	Unmodified	_RGRRQKSELS_					0	0	0			REV__ENST00000295958.9_2_4:39606797-39640607:-|nuORF	REV__ENST00000295958.9_2_4:39606797-39640607:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8483276367188	2	608.847084	1215.67962	0.60642	0.00036922	-0.060974	-3.7124E-05	0.54545	0.0003321	608.8470173384787	83.949	2.9587	84.026	83.243	86.202	0.077095					317	115	4	0	0	0	0.40106	1	22491	22491		3.2813	0.54611	1	2064800	+		37312	19784	21939	21940	45085	45085					0.08040329637719879
RGRRRRQWGLQ	11	Unmodified	_RGRRRRQWGLQ_					0	0	0			REV__ENST00000369754.7_2_6:82462234-82462363:-|nuORF	REV__ENST00000369754.7_2_6:82462234-82462363:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2872314453125	3	490.287136	1467.83958	-0.29266	-0.00014349	0.7615	0.00037336	0.46885	0.00022987	490.2874024578862	35.205	0.79932	35.28	34.99	35.79	0.075306					66	28	4	0	0	0	0.44966	1	7057	7057		4.7159	0.87001	1	706810	+		37313	20360	21940	21941	45086	45086					0.12437302425405505
RGRRSVSKEK	10	Unmodified	_RGRRSVSKEK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.8577270507812	2	601.857452	1201.70035	0.4408	0.0002653	0.74443	0.00044804	1.1852	0.00071334	601.8575114925554	94.123	0.62679	94.209	93.904	94.531	0.08667					97	50	3	0	0	0	0.40262	1	25092	25092		2.9952	1.151	1	226260			37314	5388	21941	21942	45087	45087					0.10756920017342964
RGRRSVSKEK	10	Unmodified	_RGRRSVSKEK_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.8577880859375	2	601.857452	1201.70035	0.46856	0.000282	0.4855	0.0002922	0.95406	0.00057421	601.8574658214237	94.177	0.62511	94.177	93.908	94.534	-0.00051117					94	46	3	0	0	0	0.41242	1	25065	25065		1.1933	1.1933	1	353080			37315	5388	21941	21942	45088	45088					0.10756920017342964
RGRRTLFRGRR	11	Unmodified	_RGRRTLFRGRR_					0	0	0		nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.9618225097656	3	477.627381	1429.86031	0.080183	3.8298E-05	0.060324	2.8813E-05	0.14051	6.711E-05	477.6274070804529	97.606	0.76471	97.667	97.231	97.996	0.061516					159	85	2	0	0	0	0.47853	1	26083	26083		0.92553	0.29871	1	552590			37316	5531	21942	21943	45089	45089					0.16257892805037955
RGRRTLFRGRR	11	Unmodified	_RGRRTLFRGRR_					0	0	0		nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	477.627381	1429.86031	-0.16376	-7.8216E-05	0.041418	1.9782E-05	-0.12234	-5.8434E-05	477.627481226285	97.543	0.99837	97.543	97.036	98.034	0	-0.062213	-2.0812E-05	NaN	0.92553	222	78	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	517980			37317	5531	21942	21943							0.16257892805037955
RGRSLLFSK	9	Unmodified	_RGRSLLFSK_					0	0	0		ENST00000593726.5_1_19:41305476-41306130:+|nuORF	ENST00000593726.5_1_19:41305476-41306130:+|nuORF	ENST00000593726.5_1_19:41305476-41306130:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.311279296875	2	532.322183	1062.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.084	1	52.135	51.635	52.635	0.050575								0	0	0	0.24066	1	12202	12202		9.3831	0	1				37318	12211	21943	21944	45090	45090					0.101002466996988
RGRSLLFSK	9	Unmodified	_RGRSLLFSK_					0	0	0		ENST00000593726.5_1_19:41305476-41306130:+|nuORF	ENST00000593726.5_1_19:41305476-41306130:+|nuORF	ENST00000593726.5_1_19:41305476-41306130:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3112182617188	2	532.322183	1062.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.141	1	52.191	51.691	52.691	0.050575								0	0	0	0.24066	1	12218	12218		9.3831	0	1				37319	12211	21943	21944	45091	45091					0.101002466996988
RGRSVKASRAE	11	Unmodified	_RGRSVKASRAE_					0	0	0			REV__ENST00000360338.3_1_19:57791954-57802067:+|nuORF	REV__ENST00000360338.3_1_19:57791954-57802067:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8477172851562	2	608.847084	1215.67962	0.44918	0.00027348	-0.39572	-0.00024093	0.053469	3.2554E-05	608.847096048271	82.116	1.4171	82.116	81.558	82.975	0					91	53	3	0	0	0	0.45367	1	21371	21371		4.1895	0.90819	1	695750	+		37320	20252	21944	21945	45092	45092					0.08040329637719879
RGRSVKASRAE	11	Unmodified	_RGRSVKASRAE_					0	0	0			REV__ENST00000360338.3_1_19:57791954-57802067:+|nuORF	REV__ENST00000360338.3_1_19:57791954-57802067:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8468627929688	2	608.847084	1215.67962	0.63465	0.0003864	-0.71138	-0.00043312	-0.076736	-4.6721E-05	608.846717737209	84.271	0.30029	84.271	84.137	84.437	0					37	11	4	0	0	0	0.45367	1	22113	22113		4.1895	4.1895	1	2610300	+		37321	20252	21944	21945	45093	45093					0.08040329637719879
RGRSVKASRAE	11	Unmodified	_RGRSVKASRAE_					0	0	0			REV__ENST00000360338.3_1_19:57791954-57802067:+|nuORF	REV__ENST00000360338.3_1_19:57791954-57802067:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8469848632812	2	608.847084	1215.67962	0.60993	0.00037135	-0.31768	-0.00019342	0.29225	0.00017794	608.8469691643318	84.631	1.7943	84.631	84.405	86.2	0					202	67	4	0	0	0	0.45367	2	22209	22209;22402		4.1895	0.90819	1	2172800	+		37322	20252	21944	21945	45094;45095	45094					0.08040329637719879
RGRSVKASRAE	11	Unmodified	_RGRSVKASRAE_					0	0	0			REV__ENST00000360338.3_1_19:57791954-57802067:+|nuORF	REV__ENST00000360338.3_1_19:57791954-57802067:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8473510742188	2	608.847084	1215.67962	0.34747	0.00021155	-0.01899	-1.1562E-05	0.32848	0.00019999	608.8472029355655	82.1	1.6688	82.169	81.566	83.235	0.068993					133	68	3	0	0	0	0.45367	1	21541	21541		4.1895	4.1895	1	799640	+		37323	20252	21944	21945	45096	45096					0.08040329637719879
RGRSVKASRAE	11	Unmodified	_RGRSVKASRAE_					0	0	0			REV__ENST00000360338.3_1_19:57791954-57802067:+|nuORF	REV__ENST00000360338.3_1_19:57791954-57802067:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8472290039062	2	608.847084	1215.67962	0.60642	0.00036922	-0.060974	-3.7124E-05	0.54545	0.0003321	608.8470173384787	83.949	2.9587	84.026	83.243	86.202	0.077095					317	115	4	0	0	0	0.45367	3	21820	21820;22277;22324		4.1895	4.1895	1	2064800	+		37324	20252	21944	21945	45097;45098;45099	45097					0.08040329637719879
RGRSVKASRAE	11	Unmodified	_RGRSVKASRAE_					0	0	0			REV__ENST00000360338.3_1_19:57791954-57802067:+|nuORF	REV__ENST00000360338.3_1_19:57791954-57802067:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8470458984375	2	608.847084	1215.67962	0.50749	0.00030899	-0.12153	-7.3996E-05	0.38596	0.00023499	608.8470185079906	84.018	2.8329	84.001	83.288	86.121	-0.016823					302	115	3	0	0	0	0.45367	1	22193	22193		4.1895	0.24511	1	2678900	+		37325	20252	21944	21945	45100	45100					0.08040329637719879
RGRVYRGRAR	10	Unmodified	_RGRVYRGRAR_					0	0	0		ENSG00000100836|ENST00000216727|PABPN1;nc|ENSG00000258643|Q92843-2|BCL2L2;ENSG00000258643|ENST00000678502|BCL2L2-PABPN1	ENSG00000100836|ENST00000216727|PABPN1	ENSG00000100836|ENST00000216727|PABPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.8706665039062	2	623.871228	1245.7279	-0.056943	-3.5525E-05	-0.43391	-0.0002707	-0.49085	-0.00030623	623.8706790197298	95.631	0.42745	95.709	95.535	95.962	0.077408					67	34	3	0	0	0	0.40992	1	25565	25565		1.6526	0.17072	1	148460			37326	1635	21945	21946	45101	45101					0.11486868068254807
RGRVYRGRAR	10	Unmodified	_RGRVYRGRAR_					0	0	0		ENSG00000100836|ENST00000216727|PABPN1;nc|ENSG00000258643|Q92843-2|BCL2L2;ENSG00000258643|ENST00000678502|BCL2L2-PABPN1	ENSG00000100836|ENST00000216727|PABPN1	ENSG00000100836|ENST00000216727|PABPN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	623.871228	1245.7279	0.24472	0.00015268	-0.49458	-0.00030856	-0.24986	-0.00015588	623.8705861664656	95.736	0.57146	95.732	95.519	96.091	-0.0038223	0.011817	-2.7053E-05	NaN	1.6526	84	51	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188630			37327	1635	21945	21946							0.11486868068254807
RGTAAIRRG	9	Unmodified	_RGTAAIRRG_					0	0	0		ENST00000580710.5_1_7:86781968-86782226:+|nuORF	ENST00000580710.5_1_7:86781968-86782226:+|nuORF	ENST00000580710.5_1_7:86781968-86782226:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.3079528808594	2	479.288674	956.562795	-0.039548	-1.8955E-05	-0.077591	-3.7189E-05	-0.11714	-5.6144E-05	479.28863253506245	12.471	0.28357	12.374	12.268	12.552	-0.096607					23	9	3	0	0	0	0.25431	1	133	133		9.3831	1.473	1	228750			37328	12078	21946	21947	45102	45102					0.0827763620859514
RGTGRLWRWG	10	Unmodified	_RGTGRLWRWG_					0	0	0		nc|ENSG00000140254|Q1HG43-2|DUOXA1	nc|ENSG00000140254|Q1HG43-2|DUOXA1	nc|ENSG00000140254|Q1HG43-2|DUOXA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8410034179688	2	622.841605	1243.66866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.344	1	83.324	82.824	83.824	-0.020584								0	0	0	0.37664	1	21785	21785		3.5965	0.60125	1				37329	12725	21947	21948	45103	45103					0.056569720540892376
RGTTITLVL	9	Unmodified	_RGTTITLVL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000559111.1_1_15:99798356-99798647:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.3056640625	2	487.305667	972.596781	0.95571	0.00046572	-0.84488	-0.00041171	0.11083	5.401E-05	487.30526692214056	56.087	1.1791	56.087	55.564	56.744	0					78	42	3	0	0	0	0.17277	3	13434	13434;13488;13519		27.629	2.2827	1	4386400			37330	6099	21948	21949	45104;45105;45106	45104					0.10938619856995047
RGTTITLVL	9	Unmodified	_RGTTITLVL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000559111.1_1_15:99798356-99798647:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.3058776855469	2	487.305667	972.596781	0.78022	0.00038021	-0.5785	-0.00028191	0.20172	9.83E-05	487.30545056518713	55.998	0.83608	56.069	55.618	56.454	0.070885					66	30	3	0	0	0	0.12642	1	13417	13417		34.402	0	1	4339600			37331	6099	21948	21949	45107	45107					0.10938619856995047
RGTTITLVL	9	Unmodified	_RGTTITLVL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000559111.1_1_15:99798356-99798647:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	487.305667	972.596781	0.86008	0.00041912	-0.9814	-0.00047824	-0.12132	-5.9119E-05	487.30524427506504	56.189	0.7169	56.17	55.824	56.541	-0.019081	0.061552	-0.0001002	NaN	34.402	66	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2764600			37332	6099	21948	21949							0.10938619856995047
RGVISPNFSF	10	Unmodified	_RGVISPNFSF_					0	0	0		ENST00000488952.1_1_2:96809564-96810280:-|nuORF;ENSG00000158050|ENST00000288943|DUSP2	ENST00000488952.1_1_2:96809564-96810280:-|nuORF	ENST00000488952.1_1_2:96809564-96810280:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.2814331054688	2	562.298373	1122.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.034	1	92.125	91.625	92.625	0.090668								0	0	0	0.35948	1	24456	24456		10.824	2.0785	1				37333	5336	21949	21950	45108	45108					0.02580547708839731
RGVKVRRHQ	9	Unmodified	_RGVKVRRHQ_					0	0	0		nc|ENSG00000173599|P11498-2|PC	nc|ENSG00000173599|P11498-2|PC	nc|ENSG00000173599|P11498-2|PC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.350830078125	2	568.349597	1134.68464	0.090723	5.1563E-05	1.4613	0.00083055	1.5521	0.00088211	568.3508091871598	12.371	0.20717	12.275	12.148	12.356	-0.096607					13	6	3	0	0	0	0.35563	1	124	124		0.52476	0	1	41308			37334	12840	21950	21951	45109	45109					0.12268678290979551
RGVQGRLP	8	Unmodified	_RGVQGRLP_					0	0	0		ENST00000496565.5_1_20:39985772-39986924:+|nuORF	ENST00000496565.5_1_20:39985772-39986924:+|nuORF	ENST00000496565.5_1_20:39985772-39986924:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.2771911621094	2	441.767043	881.519533	-0.058499	-2.5843E-05	-0.099749	-4.4066E-05	-0.15825	-6.9909E-05	441.7669703448277	19.004	0.57657	18.887	18.706	19.283	-0.11739					34	20	2	0	0	0	0.45307	1	2098	2098		4.756	0	1	78480			37335	11238	21951	21952	45110	45110					0.07403446431317207
RGVSGRVSL	9	Unmodified	_RGVSGRVSL_					0	0	0			REV__ENST00000609480.3_3_7:128509126-128509441:+|nuORF	REV__ENST00000609480.3_3_7:128509126-128509441:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7778625488281	2	465.777608	929.540663	-0.097384	-4.5359E-05	0.12918	6.0168E-05	0.031794	1.4809E-05	465.7775314202027	69.509	2.2575	69.509	68.616	70.873	0					165	81	3	0	0	0	0.29176	1	17837	17837		10.074	0.6908	1	522480	+		37336	22672	21952	21953	45111	45111					0.07307411740168845
RGVSGRVSL	9	Unmodified	_RGVSGRVSL_					0	0	0			REV__ENST00000609480.3_3_7:128509126-128509441:+|nuORF	REV__ENST00000609480.3_3_7:128509126-128509441:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	465.777608	929.540663	-0.038226	-1.7805E-05	0.012882	6.0002E-06	-0.025344	-1.1804E-05	465.7775179785788	69.527	2.238	69.593	68.671	70.909	0.06604	0.063807	2.0158E-05	NaN	10.074	122	80	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478700	+		37337	22672	21952	21953							0.07307411740168845
RGWRQAAF	8	Unmodified	_RGWRQAAF_					0	0	0		ENST00000506402.5_1_4:515617-515826:+|nuORF	ENST00000506402.5_1_4:515617-515826:+|nuORF	ENST00000506402.5_1_4:515617-515826:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2659912109375	2	496.264668	990.514782	0.53239	0.00026421	2.1856	0.0010846	2.718	0.0013488	496.2657546423443	79.334	0.66701	79.334	79.103	79.77	0					28	26	2	0	0	0	0.39956	1	20547	20547		19.439	3.5918	1	108200			37338	11326	21953	21954	45112	45112					0.019145622885503144
RGWRQAAF	8	Unmodified	_RGWRQAAF_					0	0	0		ENST00000506402.5_1_4:515617-515826:+|nuORF	ENST00000506402.5_1_4:515617-515826:+|nuORF	ENST00000506402.5_1_4:515617-515826:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.26580810546875	2	496.264668	990.514782	0.52765	0.00026185	1.9813	0.00098327	2.509	0.0012451	496.2656188166481	79.392	0.54048	79.363	79.104	79.644	-0.028931					31	21	2	0	0	0	0.33245	1	20568	20568		19.439	5.5329	1	146110			37339	11326	21953	21954	45113	45113					0.019145622885503144
RGWRQAAF	8	Unmodified	_RGWRQAAF_					0	0	0		ENST00000506402.5_1_4:515617-515826:+|nuORF	ENST00000506402.5_1_4:515617-515826:+|nuORF	ENST00000506402.5_1_4:515617-515826:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	496.264668	990.514782	0.51752	0.00025683	1.6762	0.00083182	2.1937	0.0010886	496.26573555381253	79.292	0.45773	79.353	79.161	79.618	0.061417	0.0031266	-0.00031643	NaN	19.439	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88195			37340	11326	21953	21954							0.019145622885503144
RGYLMERRGL	10	Unmodified	_RGYLMERRGL_					0	0	0			REV__ENST00000311661.4_2_17:77020401-77042770:+|nuORF	REV__ENST00000311661.4_2_17:77020401-77042770:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.91424560546875	3	417.564396	1249.67136	-0.20421	-8.5272E-05	-2.1121	-0.00088194	-2.3163	-0.00096721	417.56369738949536	16.115	0.37503	16.115	15.867	16.242	0					23	12	3	0	0	0	0.318	1	1258	1258		3.8763	3.4681	1	22979	+		37341	19903	21954	21955	45114	45114					0.05651059396700475
RGYYRYYNK	9	Unmodified	_RGYYRYYNK_					0	0	0		nc|ENSG00000241468|P56134-2|ATP5MF;ENSG00000241468|ENST00000292475|ATP5MF;ENST00000491560.1_1_7:99055952-99057898:-|nuORF;ENST00000481899.1_1_7:99056719-99057898:-|nuORF	nc|ENSG00000241468|P56134-2|ATP5MF	nc|ENSG00000241468|P56134-2|ATP5MF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.2156982421875	3	428.215761	1281.62546	-0.25296	-0.00010832	0.14125	6.0486E-05	-0.11171	-4.7837E-05	428.2158020532623	19.361	0.95339	19.361	19.006	19.96	0					75	33	3	0	0	0	0.12279	2	2238	2190;2238		34.932	34.932	1	416820			37342	8533	21955	21956	45115;45116	45116					-0.004092625138810035
RGYYRYYNK	9	Unmodified	_RGYYRYYNK_					0	0	0		nc|ENSG00000241468|P56134-2|ATP5MF;ENSG00000241468|ENST00000292475|ATP5MF;ENST00000491560.1_1_7:99055952-99057898:-|nuORF;ENST00000481899.1_1_7:99056719-99057898:-|nuORF	nc|ENSG00000241468|P56134-2|ATP5MF	nc|ENSG00000241468|P56134-2|ATP5MF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2157287597656	3	428.215761	1281.62546	-0.10242	-4.3859E-05	-0.0078621	-3.3667E-06	-0.11028	-4.7225E-05	428.21572217167795	19.593	1.0048	19.477	19.177	20.182	-0.11592					89	34	4	0	0	0	0.09758	1	2268	2268		38.615	38.615	1	468850			37343	8533	21955	21956	45117	45117					-0.004092625138810035
RGYYRYYNK	9	Unmodified	_RGYYRYYNK_					0	0	0		nc|ENSG00000241468|P56134-2|ATP5MF;ENSG00000241468|ENST00000292475|ATP5MF;ENST00000491560.1_1_7:99055952-99057898:-|nuORF;ENST00000481899.1_1_7:99056719-99057898:-|nuORF	nc|ENSG00000241468|P56134-2|ATP5MF	nc|ENSG00000241468|P56134-2|ATP5MF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.21563720703125	3	428.215761	1281.62546	-0.046701	-1.9998E-05	0.04562	1.9535E-05	-0.001081	-4.6288E-07	428.2157360373943	19.479	1.0845	19.423	19.114	20.199	-0.055691					94	38	4	0	0	0	0.064268	1	2244	2244		47.594	33.376	1	452130			37344	8533	21955	21956	45118	45118					-0.004092625138810035
RHDIERRRK	9	Unmodified	_RHDIERRRK_					0	0	0		nc|ENSG00000173681|A2AJT9-3|BCLAF3;nc|ENSG00000173681|A2AJT9-2|BCLAF3;ENSG00000173681|ENST00000379682|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3685302734375	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.76	1	112.76	112.26	113.26	0								0	0	0	0.2672	1	29299	29299		0.52476	0	1				37345	6740	21956	21957	45119	45119					0.1007114448577795
RHDIERRRK	9	Unmodified	_RHDIERRRK_					0	0	0		nc|ENSG00000173681|A2AJT9-3|BCLAF3;nc|ENSG00000173681|A2AJT9-2|BCLAF3;ENSG00000173681|ENST00000379682|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3688354492188	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.66	1	116.66	116.16	117.16	0								0	0	0	0.2672	1	30191	30191		0.52476	0	1				37346	6740	21956	21957	45120	45120					0.1007114448577795
RHDKLYKHR	9	Unmodified	_RHDKLYKHR_					0	0	0			REV__ENST00000493497.1_1_20:32376535-32379320:+|nuORF	REV__ENST00000493497.1_1_20:32376535-32379320:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.5908203125	3	418.2389	1251.69487	0.1328	5.5543E-05	-0.3324	-0.00013902	-0.1996	-8.348E-05	418.2386563661317	24.562	1.1468	24.49	24.055	25.202	-0.072559					117	39	4	0	0	0	0.2603	1	3695	3695		4.1895	1.1943	1	884200	+		37347	15498	21957	21958	45121	45121					0.07909241225524966
RHDKLYKHR	9	Unmodified	_RHDKLYKHR_					0	0	0			REV__ENST00000493497.1_1_20:32376535-32379320:+|nuORF	REV__ENST00000493497.1_1_20:32376535-32379320:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	418.2389	1251.69487	-0.10619	-4.4414E-05	-0.069175	-2.8932E-05	-0.17537	-7.3346E-05	418.23876810115286	24.311	1.2952	24.311	23.887	25.182	0	-0.13103	0.00012644	NaN	4.1895	128	44	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	799990	+		37348	15498	21957	21958							0.07909241225524966
RHDLSSLRP	9	Unmodified	_RHDLSSLRP_					0	0	0		ENST00000580871.5_1_17:30358457-30363256:+|nuORF	ENST00000580871.5_1_17:30358457-30363256:+|nuORF	ENST00000580871.5_1_17:30358457-30363256:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8006591796875	2	540.799072	1079.58359	0.50171	0.00027133	0.21865	0.00011825	0.72037	0.00038957	541.3009278466488	91.362	0.68319	91.452	91.21	91.893	0.090668					116	49	3	0	0	0	0.33018	1	24238	24238		4.3292	0	1	236710			37349	12079	21958	21959	45122	45122					0.04698181797630241
RHDLSSLRP	9	Unmodified	_RHDLSSLRP_					0	0	0		ENST00000580871.5_1_17:30358457-30363256:+|nuORF	ENST00000580871.5_1_17:30358457-30363256:+|nuORF	ENST00000580871.5_1_17:30358457-30363256:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	540.799072	1079.58359	0.50171	0.00027133	0.21865	0.00011825	0.72037	0.00038957	541.3009278466488	91.362	0.68319	91.452	91.21	91.893	0.090668	-0.083667	-0.00024508	NaN	4.3292	116	49	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236710			37350	12079	21958	21959							0.04698181797630241
RHEEHWNQIRE	11	Unmodified	_RHEEHWNQIRE_					0	0	0			REV__nc|ENSG00000137710|P35241-4|RDX	REV__nc|ENSG00000137710|P35241-4|RDX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2517700195312	3	511.915034	1532.72327	-0.077991	-3.9925E-05	-1.2117	-0.00062031	-1.2897	-0.00066023	511.9145293633028	14.134	0.57789	14.03	13.845	14.422	-0.10466					25	19	2	0	0	0	0.33348	1	754	754		0.40827	0.31342	1	111790	+		37351	15879	21959	21960	45123	45123					-0.021781056558211276
RHELFNFF	8	Unmodified	_RHELFNFF_					0	0	0			REV__nc|ENSG00000102904|Q2TAA8|TSNAXIP1	REV__nc|ENSG00000102904|Q2TAA8|TSNAXIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.82080078125	2	555.279983	1108.54541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.1	1	116.08	115.58	116.58	-0.022781								0	0	0	0.37724	1	30085	30085		2.3027	0.4585	1		+		37352	14340	21960	21961	45124	45124					-0.004517041170629454
RHELFNFF	8	Unmodified	_RHELFNFF_					0	0	0			REV__nc|ENSG00000102904|Q2TAA8|TSNAXIP1	REV__nc|ENSG00000102904|Q2TAA8|TSNAXIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.8333740234375	2	555.279983	1108.54541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.16	1	115.17	114.67	115.67	0.018738								0	0	0	0.37078	1	29925	29925		5.2307	0	1		+		37353	14340	21960	21961	45125	45125					-0.004517041170629454
RHEQSQRRWRY	11	Unmodified	_RHEQSQRRWRY_					0	0	0			REV__ENSG00000133980|ENST00000256362|VRTN	REV__ENSG00000133980|ENST00000256362|VRTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.8306274414062	3	534.610056	1600.80834	0.050028	2.6745E-05	-1.1852	-0.00063363	-1.1352	-0.00060688	534.6092962248699	27.841	0.60116	27.842	27.45	28.051	0.00046921					22	20	2	0	0	0	0.33348	1	4658	4658		0.40827	0.041592	1	161690	+		37354	15646	21961	21962	45126	45126					0.03196684600629851
RHFQEHPRQQL	11	Unmodified	_RHFQEHPRQQL_					0	0	0		nc|ENSG00000106330|O75425-3|MOSPD3;nc|ENSG00000106330|O75425-2|MOSPD3;nc|ENSG00000106330|O75425-4|MOSPD3;ENSG00000106330|ENST00000393950|MOSPD3	nc|ENSG00000106330|O75425-3|MOSPD3	nc|ENSG00000106330|O75425-3|MOSPD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2972106933594	3	492.592002	1474.75418	-0.90334	-0.00044498	-0.45055	-0.00022194	-1.3539	-0.00066691	492.5916743995956	34.935	0.88223	35.011	34.522	35.405	0.075306					65	31	3	0	0	0	0.33296	1	6882	6882		2.6312	0.19645	1	308510			37355	2071	21962	21963	45127	45127					0.03579092449081145
RHFRARFRRLW	11	Unmodified	_RHFRARFRRLW_					0	0	0		ENSG00000128310|ENST00000249041|GALR3	ENSG00000128310|ENST00000249041|GALR3	ENSG00000128310|ENST00000249041|GALR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.3118896484375	3	534.311393	1599.91235	0.63544	0.00033952	0.33057	0.00017663	0.96602	0.00051615	534.311556627666	32.375	0.49331	32.431	32.182	32.675	0.055313					53	17	4	0	0	0	0.48558	1	6186	6186		0	0	1	771470			37356	3362	21963	21964	45128	45128					0.13639056218812584
RHFRARFRRLW	11	Unmodified	_RHFRARFRRLW_					0	0	0		ENSG00000128310|ENST00000249041|GALR3	ENSG00000128310|ENST00000249041|GALR3	ENSG00000128310|ENST00000249041|GALR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.64599609375	3	534.311393	1599.91235	0.49389	0.00026389	0.44686	0.00023876	0.94075	0.00050266	534.3116333585708	32.387	0.572	32.441	32.167	32.739	0.054371					57	20	4	0	0	0	0.48558	1	6168	6168		0	0	1	856850			37357	3362	21963	21964	45129	45129					0.13639056218812584
RHFRKFLVY	9	Unmodified	_RHFRKFLVY_					0	0	0		ENST00000429312.1_1_7:48942986-48943091:-|nuORF	ENST00000429312.1_1_7:48942986-48943091:-|nuORF	ENST00000429312.1_1_7:48942986-48943091:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3677368164062	2	633.366924	1264.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.83	1	104.83	104.33	105.33	0.0018463								0	0	0	0.25631	1	27820	27820		4.3292	1.334	1				37358	10450	21964	21965	45130	45130					0.09752501379080059
RHFRMEVS	8	Unmodified	_RHFRMEVS_					0	0	0			REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2686767578125	2	531.269093	1060.52363	0.061087	3.2454E-05	0.20064	0.0001066	0.26173	0.00013905	531.2690360587471	28.063	0.80555	28.059	27.632	28.438	-0.0042572					43	28	2	0	0	0	0.45544	2	4822	4822;4877		3.9444	0.3479	1	199150	+		37359	23101	21965	21966	45131;45132	45131					-0.00420832137274374
RHGERVDQIF	10	Unmodified	_RHGERVDQIF_					0	0	0		UBASH3A|p.Y543Lfs*84|1|0.04|ENSG00000160185|chr21:42442590-42442591|-/C|frameshift_variant;nc|ENSG00000160185|P57075-3|UBASH3A;nc|ENSG00000160185|P57075-2|UBASH3A;UBASH3A|p.C623Sfs*15|1|0.32|ENSG00000160185|chr21:42447076-42447076|G/-|frameshift_variant;ENSG00000160185|ENST00000319294|UBASH3A	UBASH3A|p.Y543Lfs*84|1|0.04|ENSG00000160185|chr21:42442590-42442591|-/C|frameshift_variant	UBASH3A|p.Y543Lfs*84|1|0.04|ENSG00000160185|chr21:42442590-42442591|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.875	3	419.554666	1255.64217	-0.16271	-6.8267E-05	-2.5804	-0.0010826	-2.7431	-0.0011509	419.55348042283055	31.172	0.1622	31.214	31.106	31.268	0.042366					9	5	2	0	0	0	0.31867	1	5799	5799		5.0475	2.7647	1	37560			37360	23408	21966	21967	45133	45133					0.024572383720624202
RHGKIGPIGSK	11	Unmodified	_RHGKIGPIGSK_					0	0	0		nc|ENSG00000118004|Q9BWP8-6|COLEC11;nc|ENSG00000118004|Q9BWP8-4|COLEC11;nc|ENSG00000118004|Q9BWP8-2|COLEC11;nc|ENSG00000118004|Q9BWP8-9|COLEC11;ENSG00000118004|ENST00000349077|COLEC11;nc|ENSG00000118004|Q9BWP8-10|COLEC11	nc|ENSG00000118004|Q9BWP8-6|COLEC11	nc|ENSG00000118004|Q9BWP8-6|COLEC11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8433227539062	2	575.346189	1148.67783	0.415	0.00023877	-2.6241	-0.0015098	-2.2091	-0.001271	575.3454592594685	88.398	2.6001	88.487	87.352	89.952	0.089195					247	141	4	0	0	0	0.44523	1	23261	23261		5.2969	0.54088	1	1377600			37361	2813	21967	21968	45134	45134					0.10943320619730912
RHGVDRLQAEL	11	Unmodified	_RHGVDRLQAEL_					0	0	0		ENST00000530857.1_1_17:72959162-72968794:-|nuORF;ENST00000425042.6_1_17:72960710-72968794:-|nuORF	ENST00000530857.1_1_17:72959162-72968794:-|nuORF	ENST00000530857.1_1_17:72959162-72968794:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.5959777832031	3	431.905587	1292.69493	-0.15389	-6.6466E-05	2.0619	0.00089053	1.908	0.00082407	431.9064896979958	43.914	0.24526	43.914	43.819	44.065	0					11	8	2	0	0	0	0.3325	1	9712	9712		2.2527	2.2527	1	91397			37362	10403	21968	21969	45135	45135					0.060291964349062255
RHHGGWPL	8	Unmodified	_RHHGGWPL_					0	0	0			REV__chr11:65666217-65671423|536|10.83|0.0|20.05|+|2|RELA-DT,RELA-DT|1	REV__chr11:65666217-65671423|536|10.83|0.0|20.05|+|2|RELA-DT,RELA-DT|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.74432373046875	2	480.25156	958.488568	0.05292	2.5415E-05	-1.2836	-0.00061647	-1.2307	-0.00059105	480.2506466401757	17.913	0.407	17.795	17.631	18.038	-0.11739					19	13	2	0	0	0	0.45015	1	1771	1771		5.7604	1.0044	1	47218	+		37363	13175	21969	21970	45136	45136					0.007662931170671072
RHHGGWPL	8	Unmodified	_RHHGGWPL_					0	0	0			REV__chr11:65666217-65671423|536|10.83|0.0|20.05|+|2|RELA-DT,RELA-DT|1	REV__chr11:65666217-65671423|536|10.83|0.0|20.05|+|2|RELA-DT,RELA-DT|1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	480.25156	958.488568	0.05292	2.5415E-05	-1.2836	-0.00061647	-1.2307	-0.00059105	480.2506466401757	17.913	0.407	17.795	17.631	18.038	-0.11739	0.003582	2.6165E-05	NaN	5.7604	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47218	+		37364	13175	21969	21970							0.007662931170671072
RHHLMWLM	8	Unmodified	_RHHLMWLM_					0	0	0		ENST00000367272.4_1_Y:28479905-28500547:-|nuORF	ENST00000367272.4_1_Y:28479905-28500547:-|nuORF	ENST00000367272.4_1_Y:28479905-28500547:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.2860107421875	2	562.286231	1122.55791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.92	1	113.92	113.42	114.42	0								0	0	0	0.37664	1	29575	29575		2.5775	0	1				37365	9733	21970	21971	45137	45137					0.0015329274997384346
RHIQSLQTRVL	11	Unmodified	_RHIQSLQTRVL_					0	0	0		nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB;ENST00000571632.5_1_17:7838298-7849136:+|nuORF;nc|ENSG00000170037|Q8N137-4|CNTROB	nc|ENSG00000170037|Q8N137-5|CNTROB	nc|ENSG00000170037|Q8N137-5|CNTROB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.5702209472656	3	450.936999	1349.78917	0.1518	6.845E-05	-0.49761	-0.00022439	-0.34581	-0.00015594	450.9367103750925	31.254	0.46476	31.295	31.042	31.507	0.040991					52	16	4	0	0	0	0.3287	1	5799	5799		5.8681	0	1	516330			37366	6419	21971	21972	45138	45138					0.1282633525700021
RHISIQRQL	9	Unmodified	_RHISIQRQL_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L;TRMT1L|p.K275Nfs*6|1|0.16|ENSG00000121486|chr1:185143391-185143391|T/-|frameshift_variant	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8433837890625	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.605	1	86.689	86.189	87.189	0.084251								0	0	0	0.25631	1	22793	22793		4.3292	0	1				37367	2998	21972	21973	45139	45139					0.10422436476960684
RHKIVSGLRE	10	Unmodified	_RHKIVSGLRE_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;nc|ENSG00000198198|Q5T011-4|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.859130859375	2	597.856921	1193.69929	0.53282	0.00031855	-0.17984	-0.00010752	0.35298	0.00021103	597.8569574362817	90.616	0.40546	90.706	90.516	90.921	0.090675					73	31	3	0	0	0	0.40106	1	24061	24061		3.2813	0	1	255130			37368	8049	21973	21974	45140	45140					0.11018705648439209
RHKIVSGLRE	10	Unmodified	_RHKIVSGLRE_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;nc|ENSG00000198198|Q5T011-4|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8562622070312	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.19	1	97.184	96.684	97.684	-0.0055466								0	0	0	0.37739	1	26013	26013		3.2813	0.28607	1				37369	8049	21973	21974	45141	45141					0.11018705648439209
RHKNSSKKPY	10	Unmodified	_RHKNSSKKPY_					0	0	0		ENST00000296051.6_1_3:148890146-148890290:+|nuORF	ENST00000296051.6_1_3:148890146-148890290:+|nuORF	ENST00000296051.6_1_3:148890146-148890290:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8438110351562	2	622.846553	1243.67855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.07	1	113.08	112.58	113.58	0.014824								0	0	0	0.37157	1	29421	29421		5.7319	0.83484	1				37370	9179	21974	21975	45142	45142					0.06646115268813446
RHKTTSPE	8	Unmodified	_RHKTTSPE_					0	0	0		nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENSG00000153339|ENST00000283351|TRAPPC8	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.9590759277344	2	478.251423	954.488293	0.25859	0.00012367	-1.0996	-0.00052589	-0.84102	-0.00040222	478.25256229888737	91.551	0.16713	91.642	91.508	91.675	0.090675					18	13	2	0	0	0	0.34378	1	24298	24298		3.9444	0	1	61543			37371	5075	21975	21976	45143	45143					0.009228286065649627
RHLEDILVL	9	Unmodified	_RHLEDILVL_					0	0	0			REV__nc|ENSG00000131558|Q96A65-2|EXOC4	REV__nc|ENSG00000131558|Q96A65-2|EXOC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.5247802734375	2	554.329673	1106.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.2	1	114.2	113.7	114.7	0								0	0	0	0.264	1	29635	29635		1.8442	0	1		+		37372	15523	21976	21977	45144	45144					0.09573693777042536
RHLEDILVL	9	Unmodified	_RHLEDILVL_					0	0	0			REV__nc|ENSG00000131558|Q96A65-2|EXOC4	REV__nc|ENSG00000131558|Q96A65-2|EXOC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.332275390625	2	554.329673	1106.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.42	1	114.42	113.92	114.92	0								0	0	0	0.264	1	29687	29687		1.8442	0	1		+		37373	15523	21976	21977	45145	45145					0.09573693777042536
RHLEDILVL	9	Unmodified	_RHLEDILVL_					0	0	0			REV__nc|ENSG00000131558|Q96A65-2|EXOC4	REV__nc|ENSG00000131558|Q96A65-2|EXOC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3323364257812	2	554.329673	1106.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.58	1	116.56	116.06	117.06	-0.022781								0	0	0	0.264	1	30197	30197		1.8442	0	1		+		37374	15523	21976	21977	45146	45146					0.09573693777042536
RHLEDILVL	9	Unmodified	_RHLEDILVL_					0	0	0			REV__nc|ENSG00000131558|Q96A65-2|EXOC4	REV__nc|ENSG00000131558|Q96A65-2|EXOC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3318481445312	2	554.329673	1106.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.08	1	118.06	117.56	118.56	-0.024147								0	0	0	0.264	1	30539	30539		1.8442	0	1		+		37375	15523	21976	21977	45147	45147					0.09573693777042536
RHLEDILVL	9	Unmodified	_RHLEDILVL_					0	0	0			REV__nc|ENSG00000131558|Q96A65-2|EXOC4	REV__nc|ENSG00000131558|Q96A65-2|EXOC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3319702148438	2	554.329673	1106.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.7	1	112.71	112.21	113.21	0.0131								0	0	0	0.264	1	29326	29326		1.8442	0	1		+		37376	15523	21976	21977	45148	45148					0.09573693777042536
RHLEDILVL	9	Unmodified	_RHLEDILVL_					0	0	0			REV__nc|ENSG00000131558|Q96A65-2|EXOC4	REV__nc|ENSG00000131558|Q96A65-2|EXOC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3312377929688	2	554.329673	1106.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.94	1	113.96	113.46	114.46	0.016708								0	0	0	0.264	1	29641	29641		1.8442	0	1		+		37377	15523	21976	21977	45149	45149					0.09573693777042536
RHLEDILVL	9	Unmodified	_RHLEDILVL_					0	0	0			REV__nc|ENSG00000131558|Q96A65-2|EXOC4	REV__nc|ENSG00000131558|Q96A65-2|EXOC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.330078125	2	554.329673	1106.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.07	1	114.09	113.59	114.59	0.016708								0	0	0	0.264	1	29671	29671		1.8442	0	1		+		37378	15523	21976	21977	45150	45150					0.09573693777042536
RHLILTSSKR	10	Unmodified	_RHLILTSSKR_					0	0	0			REV__nc|ENSG00000211812|A0A0B4J265|TRAV26-2	REV__nc|ENSG00000211812|A0A0B4J265|TRAV26-2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2641906738281	3	404.250806	1209.73059	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.65	1	106.65	106.15	107.15	-0.0060425								0	0	0	0.37664	1	28190	28190		1.7423	0.52744	1		+		37379	23184	21977	21978	45151	45151					0.13411278682519878
RHLLGPLEEVL	11	Unmodified	_RHLLGPLEEVL_					0	0	0		ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3746337890625	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.874	1	96.868	96.368	97.368	-0.0055466								0	0	0	0.36137	1	25917	25917		5.7319	0.83484	1				37380	9123	21978	21979	45152	45152					0.10829323385610223
RHLLGPLEEVL	11	Unmodified	_RHLLGPLEEVL_					0	0	0		ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3732299804688	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.273	1	97.267	96.767	97.767	-0.0055466								0	0	0	0.37501	1	26037	26037		2.7352	1.2533	1				37381	9123	21978	21979	45153	45153					0.10829323385610223
RHLRTLQR	8	Unmodified	_RHLRTLQR_					0	0	0			REV__ENST00000478388.1_1_6:31999390-31999952:+|nuORF	REV__ENST00000478388.1_1_6:31999390-31999952:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.33056640625	2	540.330873	1078.64719	0.28324	0.00015304	-0.45527	-0.000246	-0.17203	-9.2955E-05	540.330619462548	80.815	0.61972	80.88	80.493	81.112	0.065094					79	25	4	0	0	0	0.34272	1	20980	20980		0.45834	0.45834	1	871580	+		37382	21450	21979	21980	45154	45154					0.11101587025336812
RHLRTLQR	8	Unmodified	_RHLRTLQR_					0	0	0			REV__ENST00000478388.1_1_6:31999390-31999952:+|nuORF	REV__ENST00000478388.1_1_6:31999390-31999952:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.818115234375	2	540.330873	1078.64719	0.43073	0.00023273	-0.91746	-0.00049573	-0.48673	-0.000263	540.831908008868	93.201	0.24707	93.288	93.147	93.394	0.08667					39	23	2	0	0	0	0.34408	1	24785	24785		2.3027	0	1	77666	+		37383	21450	21979	21980	45155	45155					0.11101587025336812
RHMASRRKM	9	Unmodified	_RHMASRRKM_					0	0	0		ENST00000288985.11_1_9:98638280-98643193:+|nuORF	ENST00000288985.11_1_9:98638280-98643193:+|nuORF	ENST00000288985.11_1_9:98638280-98643193:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8343505859375	2	586.816218	1171.61788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.364	1	79.426	78.926	79.926	0.061417								0	0	0	0.2505	1	20566	20566		6.2058	0.47393	1				37384	9147	21980	21981	45156	45156					0.03893983413195201
RHNKRRKF	8	Unmodified	_RHNKRRKF_					0	0	0		ENSG00000178445|ENST00000321612|GLDC	ENSG00000178445|ENST00000321612|GLDC	ENSG00000178445|ENST00000321612|GLDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3142700195312	2	571.344315	1140.67408	-0.10535	-6.0194E-05	-1.2453	-0.0007115	-1.3507	-0.0007717	571.343592994316	18.497	0.34142	18.439	18.313	18.654	-0.058174					20	11	2	0	0	0	0.34437	1	1912	1912		0.69038	0.088878	1	40651			37385	7058	21981	21982	45157	45157					0.10936695636564764
RHNLSLHTR	9	Unmodified	_RHNLSLHTR_					0	0	0		ENSG00000204060|ENST00000641094|FOXO6	ENSG00000204060|ENST00000641094|FOXO6	ENSG00000204060|ENST00000641094|FOXO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8192749023438	2	567.317963	1132.62137	0.46259	0.00026244	0.39528	0.00022425	0.85787	0.00048669	567.8192753051193	44.613	1.0902	44.613	44.115	45.206	0					142	39	5	0	0	0	0.23767	1	9898	9898		18.146	2.2992	1	3293000			37386	8196	21982	21983	45158	45158					0.060366927830727946
RHNTTHLRLK	10	Unmodified	_RHNTTHLRLK_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.3739624023438	2	638.373269	1274.73199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.826	1	94.826	94.326	95.326	0								0	0	0	0.37664	1	25303	25303		3.5965	1.9439	1		+		37387	14069	21983	21984	45159	45159					0.10560912771302355
RHPNKSACDPQ	11	Unmodified	_RHPNKSACDPQ_					0	0	0			REV__ENST00000597186.5_1_19:58640094-58640166:-|nuORF	REV__ENST00000597186.5_1_19:58640094-58640166:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.7969360351562	2	626.796203	1251.57785	0.35081	0.00021988	1.2975	0.00081327	1.6483	0.0010332	626.7971768379773	26.843	0.47506	26.831	26.483	26.958	-0.011562					35	16	3	0	0	0	0.47742	1	4506	4506		1.0715	0.10919	1	130110	+		37388	22606	21984	21985	45160	45160					-0.037872847763765094
RHPRLTFRR	9	Unmodified	_RHPRLTFRR_					0	0	0		ENST00000518357.1_1_5:169758569-169760446:+|nuORF	ENST00000518357.1_1_5:169758569-169760446:+|nuORF	ENST00000518357.1_1_5:169758569-169760446:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8696899414062	2	619.870697	1237.72684	0.34657	0.00021483	-1.5274	-0.00094676	-1.1808	-0.00073193	619.8690821493483	92.993	0.72929	92.993	92.509	93.238	0.00046539					92	60	2	0	0	0	0.26168	1	24648	24648		1.8442	0.36234	1	203910			37389	11444	21985	21986	45161	45161					0.11748653699328315
RHPSTAPPTDL	11	Unmodified	_RHPSTAPPTDL_					0	0	0		nc|ENSG00000100767|O95428-2|PAPLN;ENST00000557061.5_1_14:73729237-73739369:+|nuORF	nc|ENSG00000100767|O95428-2|PAPLN	nc|ENSG00000100767|O95428-2|PAPLN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.3192138671875	2	596.309469	1190.60439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.59	1	101.62	101.12	102.12	0.027206								0	0	0	0.36335	1	27094	27094		5.2969	1.7004	1				37390	11866	21986	21987	45162	45162					0.0167072738661318
RHQLSDSVCE	10	Unmodified	_RHQLSDSVCE_					0	0	0			REV__nc|ENSG00000174678|A6NHR8|FAM47DP	REV__nc|ENSG00000174678|A6NHR8|FAM47DP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.2883911132812	2	587.269487	1172.52442	0.43135	0.00025332	0.72001	0.00042284	1.1514	0.00067616	587.2697993833183	50.022	1.0267	50.022	49.434	50.461	0					93	37	3	0	0	0	0.29589	1	11530	11530		22.736	0	1	949710	+		37391	23090	21987	21988	45163	45163					-0.05494082278869428
RHQLSDSVCE	10	Unmodified	_RHQLSDSVCE_					0	0	0			REV__nc|ENSG00000174678|A6NHR8|FAM47DP	REV__nc|ENSG00000174678|A6NHR8|FAM47DP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.2698974609375	2	587.269487	1172.52442	0.58369	0.00034278	0.52807	0.00031012	1.1118	0.0006529	587.2697404682613	49.96	1.1226	50.005	49.368	50.491	0.044891					102	41	3	0	0	0	0.29589	1	11583	11583		22.736	0	1	851120	+		37392	23090	21987	21988	45164	45164					-0.05494082278869428
RHQLSDSVCE	10	Unmodified	_RHQLSDSVCE_					0	0	0			REV__nc|ENSG00000174678|A6NHR8|FAM47DP	REV__nc|ENSG00000174678|A6NHR8|FAM47DP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.2705688476562	2	587.269487	1172.52442	0.69917	0.0004106	0.85102	0.00049978	1.5502	0.00091038	587.269950401253	51.032	0.86163	51.041	50.511	51.373	0.0095673					62	32	2	0	0	0	0.22916	1	11904	11904		29.082	0	1	827340	+		37393	23090	21987	21988	45165	45165					-0.05494082278869428
RHQLSDSVCE	10	Unmodified	_RHQLSDSVCE_					0	0	0			REV__nc|ENSG00000174678|A6NHR8|FAM47DP	REV__nc|ENSG00000174678|A6NHR8|FAM47DP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.288330078125	2	587.269487	1172.52442	0.71322	0.00041885	0.47226	0.00027735	1.1855	0.0006962	587.2697173278295	50.143	1.1489	50.164	49.429	50.578	0.020695					104	42	3	0	0	0	0.29589	1	11461	11461		22.736	0	1	751220	+		37394	23090	21987	21988	45166	45166					-0.05494082278869428
RHQRTHNK	8	Unmodified	_RHQRTHNK_					0	0	0		nc|ENSG00000184617|A6NDX5|ZNF840P	nc|ENSG00000184617|A6NDX5|ZNF840P	nc|ENSG00000184617|A6NDX5|ZNF840P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.2882690429688	2	538.794655	1075.57476	0.43854	0.00023628	2.1693	0.0011688	2.6079	0.0014051	538.7956327552752	24.321	0.57183	24.282	24.02	24.591	-0.038927					30	19	2	0	0	0	0.34353	1	3767	3767		4.756	0	1	117740			37395	12876	21988	21989	45167	45167					0.039992529518031006
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8560180664062	2	597.856921	1193.69929	0.098909	5.9133E-05	-0.3002	-0.00017948	-0.20129	-0.00012034	597.8565954102004	98.534	0.37212	98.534	98.397	98.77	0					74	40	2	0	0	0	0.34681	1	26415	26415		1.8442	1.8442	1	91934	+		37396	13744	21989	21990	45168	45168					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8560180664062	2	597.856921	1193.69929	0.069525	4.1566E-05	-0.52486	-0.00031379	-0.45534	-0.00027223	597.8564940235786	99.189	0.3053	99.189	99.1	99.405	0					61	37	2	0	0	0	0.34681	2	26538	26538;26580		1.8442	0	1	74597	+		37397	13744	21989	21990	45169;45170	45169					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8567504882812	2	597.856921	1193.69929	0.069481	4.154E-05	-0.4351	-0.00026013	-0.36562	-0.00021859	598.3583694256314	102.15	0.5094	102.15	101.88	102.39	0					118	73	2	0	0	0	0.34681	2	27188	27188;27201		1.8442	0.36234	1	98639	+		37398	13744	21989	21990	45171;45172	45171					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8569946289062	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.982	1	90.982	90.482	91.482	0								0	0	0	0.2575	1	24140	24140		3.9444	0.66309	1		+		37399	13744	21989	21990	45173	45173					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3467407226562	2	597.856921	1193.69929	0.45924	0.00027456	-0.13493	-8.067E-05	0.32431	0.00019389	597.8568706905814	91.523	0.5671	91.523	91.279	91.846	0					61	42	2	0	0	0	0.25779	1	24238	24238		6.2058	2.9245	1	91550	+		37400	13744	21989	21990	45174	45174					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3231811523438	2	597.856921	1193.69929	0.069525	4.1566E-05	-0.52486	-0.00031379	-0.45534	-0.00027223	597.8564940235786	99.189	0.3053	99.189	99.1	99.405	0					61	37	2	0	0	0	0.26168	1	26549	26549		1.8442	0	1	74597	+		37401	13744	21989	21990	45175	45175					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8568725585938	2	597.856921	1193.69929	0.53282	0.00031855	-0.17984	-0.00010752	0.35298	0.00021103	597.8569574362817	90.616	0.40546	90.706	90.516	90.921	0.090675					73	31	3	0	0	0	0.33276	2	23993	23982;23993		3.9444	0.36234	1	255130	+		37402	13744	21989	21990	45176;45177	45177					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.856201171875	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.304	1	91.395	90.895	91.895	0.090668								0	0	0	0.2505	1	24229	24229		6.2058	0.47393	1		+		37403	13744	21989	21990	45178	45178					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8560180664062	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.443	1	93.529	93.029	94.029	0.08667								0	0	0	0.2575	1	24886	24886		3.9444	0.66309	1		+		37404	13744	21989	21990	45179	45179					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8563842773438	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.633	1	96.703	96.203	97.203	0.070465								0	0	0	0.264	1	25835	25835		1.8442	0.36234	1		+		37405	13744	21989	21990	45180	45180					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8563842773438	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.748	1	99.787	99.287	100.29	0.038994								0	0	0	0.264	1	26673	26673		1.8442	0	1		+		37406	13744	21989	21990	45181	45181					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8565063476562	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.9	1	101.92	101.42	102.42	0.016685								0	0	0	0.264	1	27160	27160		1.8442	0	1		+		37407	13744	21989	21990	45182	45182					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.856201171875	2	597.856921	1193.69929	0.50806	0.00030375	-0.77927	-0.00046589	-0.27121	-0.00016214	597.8563231368929	91.4	0.3158	91.491	91.342	91.657	0.090675					37	26	2	0	0	0	0.25779	1	24229	24229		6.2058	1.8765	1	149940	+		37408	13744	21989	21990	45183	45183					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.856201171875	2	597.856921	1193.69929	0.35742	0.00021369	-0.52647	-0.00031475	-0.16905	-0.00010107	597.856510583953	98.626	0.56506	98.619	98.467	99.032	-0.0069046					96	65	2	0	0	0	0.34681	1	26441	26441		1.8442	1.8442	1	141720	+		37409	13744	21989	21990	45184	45184					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8554077148438	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.737	1	80.71	80.21	81.21	-0.026825								0	0	0	0.25858	1	20981	20981		3.5965	0.8613	1		+		37410	13744	21989	21990	45185	45185					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8558349609375	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.372	1	93.372	92.872	93.872	-0.00051117								0	0	0	0.2575	1	24863	24863		3.9444	0.66309	1		+		37411	13744	21989	21990	45186	45186					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8560791015625	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.772	1	94.77	94.27	95.27	-0.0020142								0	0	0	0.2489	1	25294	25294		6.7232	3.4419	1		+		37412	13744	21989	21990	45187	45187					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8565063476562	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.39	1	95.386	94.886	95.886	-0.0038147								0	0	0	0.264	1	25480	25480		1.8442	0	1		+		37413	13744	21989	21990	45188	45188					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8563842773438	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.251	1	97.245	96.745	97.745	-0.0055466								0	0	0	0.2575	1	26030	26030		3.9444	0.94915	1		+		37414	13744	21989	21990	45189	45189					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8568115234375	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.99	1	100.98	100.48	101.48	-0.0054703								0	0	0	0.264	1	26982	26982		1.8442	0	1		+		37415	13744	21989	21990	45190	45190					0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	597.856921	1193.69929	0.098909	5.9133E-05	-0.3002	-0.00017948	-0.20129	-0.00012034	597.8565954102004	98.534	0.37212	98.534	98.397	98.77	0	-0.042632	0.00016848	NaN	1.8442	74	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91934	+		37416	13744	21989	21990							0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	597.856921	1193.69929	0.27897	0.00016678	-0.96887	-0.00057924	-0.6899	-0.00041246	597.8562004201673	99.253	0.21133	99.304	99.268	99.479	0.050888	0.070945	-0.00014029	NaN	1.8442	53	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108860	+		37417	13744	21989	21990							0.11018705648439209
RHREKKELV	9	Unmodified	_RHREKKELV_					0	0	0			REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	REV__ENST00000471215.1_1_7:73111917-73112213:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	597.856921	1193.69929	0.34232	0.00020466	-1.0094	-0.00060346	-0.66705	-0.0003988	597.8562371373761	99.213	0.73003	99.206	99.032	99.762	-0.0069046	-0.027112	-0.00018872	NaN	1.8442	134	93	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172140	+		37418	13744	21989	21990							0.11018705648439209
RHRLHTKA	8	Unmodified	_RHRLHTKA_					0	0	0		ENST00000503203.5_1_5:115350153-115355748:+|nuORF	ENST00000503203.5_1_5:115350153-115355748:+|nuORF	ENST00000503203.5_1_5:115350153-115355748:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.80517578125	2	509.804491	1017.59443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.76	1	115.74	115.24	116.24	-0.020988								0	0	0	0.38004	1	30009	30009		0.69038	0	1				37419	11289	21990	21991	45191	45191					0.08633628962536477
RHRQRLQR	8	Unmodified	_RHRQRLQR_					0	0	0			REV__ENST00000334370.8_1_19:42857623-42857680:+|nuORF	REV__ENST00000334370.8_1_19:42857623-42857680:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8430786132812	2	575.344846	1148.67514	0.36616	0.00021067	0.50636	0.00029133	0.87252	0.000502	575.3454640549686	88.497	1.7325	88.497	87.398	89.131	0					189	84	4	0	0	0	0.46022	1	23080	23080		2.3027	0	1	1263200	+		37420	20060	21991	21992	45192	45192					0.10674910005445781
RHRRMAAS	8	Unmodified	_RHRRMAAS_					0	0	0		ENST00000369683.5_2_10:111667506-111683236:-|nuORF;ENST00000430337.5_1_10:111651488-111683221:-|nuORF	ENST00000369683.5_2_10:111667506-111683236:-|nuORF	ENST00000369683.5_2_10:111667506-111683236:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.6344299316406	2	492.767052	983.51955	0.26985	0.00013297	-3.8131	-0.001879	-3.5432	-0.001746	492.76572670621243	93.308	0.1058	93.308	93.232	93.338	0					12	8	2	0	0	0	0.34353	1	24846	24846		4.756	0.42677	1	17770			37421	9781	21992	21993	45193	45193					0.02713123159674069
RHRRRQNR	8	Unmodified	_RHRRRQNR_					0	0	0			REV__nc|ENSG00000177076|Q5QJU3-3|ACER2	REV__nc|ENSG00000177076|Q5QJU3-3|ACER2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8457641601562	2	589.845545	1177.67654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.14	1	117.11	116.61	117.61	-0.024147								0	0	0	0.38004	1	30329	30329		0.69038	0	1		+		37422	23102	21993	21994	45194	45194					0.09480544094208199
RHRSVSTRSS	10	Unmodified	_RHRSVSTRSS_					0	0	0			REV__nc|ENSG00000186660|Q96JP5-2|ZFP91	REV__nc|ENSG00000186660|Q96JP5-2|ZFP91	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8343505859375	2	586.815784	1171.61702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.894	1	80.894	80.394	81.394	0								0	0	0	0.35954	1	21048	21048		10.8	1.4164	1		+		37423	18459	21994	21995	45195	45195					0.03807183569506378
RHRVTGQPL	9	Unmodified	_RHRVTGQPL_					0	0	0			REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF	REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3109741210938	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.95	1	112.96	112.46	113.46	0.014824								0	0	0	0.2575	1	29390	29390		3.9444	0.3479	1		+		37424	20715	21995	21996	45196	45196					0.07586191897121353
RHSMKQSP	8	Unmodified	_RHSMKQSP_					0	0	0			REV__ENST00000343938.8_1_1:1260464-1262236:+|nuORF	REV__ENST00000343938.8_1_1:1260464-1262236:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.2832946777344	2	485.747993	969.481433	-0.0094129	-4.5723E-06	-0.33944	-0.00016488	-0.34885	-0.00016946	485.7477323436167	14.831	0.090683	14.721	14.646	14.737	-0.10981					4	2	2	0	0	0	0.34367	1	847	847		4.3292	0	1	29778	+		37425	20135	21996	21997	45197	45197					-0.004528075456391889
RHSSLAKHKI	10	Unmodified	_RHSSLAKHKI_					0	0	0		ENSG00000241149|ENST00000330020|ZNF722	ENSG00000241149|ENST00000330020|ZNF722	ENSG00000241149|ENST00000330020|ZNF722	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.342041015625	2	588.851638	1175.68872	0.35164	0.00020706	-0.50854	-0.00029945	-0.15689	-9.2387E-05	588.8510498348444	91.77	0.56885	91.77	91.527	92.096	0					54	37	2	0	0	0	0.39009	2	24337	24337;24389		5.2969	1.7004	1	133540			37426	8531	21997	21998	45198;45199	45198					0.10790722994033786
RHSSSLAQH	9	Unmodified	_RHSSSLAQH_					0	0	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.22705078125	2	511.759946	1021.50534	-0.11465	-5.8674E-05	-1.1699	-0.0005987	-1.2845	-0.00065737	511.75916788183076	18.514	0.50323	18.456	18.285	18.788	-0.058174					38	17	3	0	0	0	0.24848	1	1915	1915		9.3831	9.3831	1	266110			37427	8740	21998	21999	45200	45200					-0.004552507876155687
RHSVIYIQA	9	Unmodified	_RHSVIYIQA_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7772827148438	2	543.806365	1085.59818	0.13061	7.1029E-05	0.51675	0.00028101	0.64736	0.00035204	544.3083281236862	13.082	0.3804	13.082	12.847	13.227	0					20	13	2	0	0	0	0.26188	1	294	294		1.6526	0.17072	1	87300			37428	837	21999	22000	45201	45201					0.05880253945747427
RHSVIYIQA	9	Unmodified	_RHSVIYIQA_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7775268554688	2	543.806365	1085.59818	0.24222	0.00013172	0.93094	0.00050625	1.1732	0.00063797	544.3086136687156	13.167	0.40825	13.068	12.841	13.249	-0.099291					31	11	4	0	0	0	0.26188	1	323	323		1.6526	0	1	99121			37429	837	21999	22000	45202	45202					0.05880253945747427
RHTCTAVPRRA	11	Unmodified	_RHTCTAVPRRA_					0	0	0			REV__ENST00000409293.5_2_19:1277295-1279069:+|nuORF	REV__ENST00000409293.5_2_19:1277295-1279069:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.328857421875	2	634.343655	1266.67276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.677	1	92.678	92.178	93.178	0.00046539								0	0	0	0.37501	1	24653	24653		2.7352	1.0826	1		+		37430	20758	22000	22001	45203	45203					0.05008693485456206
RHVLAAKER	9	Unmodified	_RHVLAAKER_					0	0	0		nc|ENSG00000170777|Q96J77-3|TPD52L3;ENSG00000170777|ENST00000314556|TPD52L3;nc|ENSG00000170777|Q96J77|TPD52L3	nc|ENSG00000170777|Q96J77-3|TPD52L3	nc|ENSG00000170777|Q96J77-3|TPD52L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.278564453125	2	540.325257	1078.63596	0.16461	8.8943E-05	-0.50575	-0.00027327	-0.34114	-0.00018433	540.3251033265906	14.208	0.50624	14.208	14.055	14.561	0					39	17	3	0	0	0	0.25612	1	644	644		8.1555	1.4324	1	118830			37431	6478	22001	22002	45204	45204					0.09978764931202022
RHVLVNVSR	9	Unmodified	_RHVLVNVSR_					0	0	0			REV__ENST00000404241.6_1_22:39918607-39918652:+|nuORF	REV__ENST00000404241.6_1_22:39918607-39918652:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2784423828125	2	540.325257	1078.63596	0.15549	8.4014E-05	-0.2117	-0.00011439	-0.056211	-3.0372E-05	540.3252162776539	14.342	0.66196	14.238	14.049	14.711	-0.10466					40	22	3	0	0	0	0.25527	1	682	682		8.7454	1.4562	1	102600	+		37432	20725	22002	22003	45205	45205					0.0997876493122476
RHVPGLHQ	8	Unmodified	_RHVPGLHQ_					0	0	0			REV__ENSG00000123338|ENST00000293373|NCKAP1L	REV__ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.28338623046875	2	472.264668	942.514782	0.070349	3.3224E-05	0.13457	6.3553E-05	0.20492	9.6776E-05	472.2643313123124	91.771	0.21204	91.771	91.673	91.885	0					21	13	2	0	0	0	0.34247	1	24387	24387		8.5933	0.68312	1	116630	+		37433	15185	22003	22004	45206	45206					0.04122562288569043
RIAEFAFEY	9	Unmodified	_RIAEFAFEY_					0	0	0		ENST00000558509.5_1_15:78453927-78455839:+|nuORF;nc|ENSG00000166411|P50213-2|IDH3A;ENSG00000166411|ENST00000299518|IDH3A	ENST00000558509.5_1_15:78453927-78455839:+|nuORF	ENST00000558509.5_1_15:78453927-78455839:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.2846069335938	2	573.284931	1144.55531	0.0961	5.5093E-05	-0.60561	-0.00034719	-0.50951	-0.00029209	573.2844424184768	61.679	0.92729	61.679	61.389	62.316	0					64	34	4	0	0	0	0.12279	1	15220	15220		34.932	15.675	1	558090			37434	6075	22004	22005	45207	45207					-0.011185609023186771
RIAEFAFEY	9	Unmodified	_RIAEFAFEY_					0	0	0		ENST00000558509.5_1_15:78453927-78455839:+|nuORF;nc|ENSG00000166411|P50213-2|IDH3A;ENSG00000166411|ENST00000299518|IDH3A	ENST00000558509.5_1_15:78453927-78455839:+|nuORF	ENST00000558509.5_1_15:78453927-78455839:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.2850952148438	2	573.284931	1144.55531	-0.048494	-2.7801E-05	-0.55526	-0.00031832	-0.60376	-0.00034612	573.2845527640186	61.631	0.77113	61.728	61.429	62.2	0.096985					60	27	3	0	0	0	0.048637	1	15185	15185		53.404	21.099	1	609020			37435	6075	22004	22005	45208	45208					-0.011185609023186771
RIAEFAFEY	9	Unmodified	_RIAEFAFEY_					0	0	0		ENST00000558509.5_1_15:78453927-78455839:+|nuORF;nc|ENSG00000166411|P50213-2|IDH3A;ENSG00000166411|ENST00000299518|IDH3A	ENST00000558509.5_1_15:78453927-78455839:+|nuORF	ENST00000558509.5_1_15:78453927-78455839:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.2843627929688	2	573.284931	1144.55531	-0.10821	-6.2036E-05	-0.56674	-0.0003249	-0.67495	-0.00038694	573.284495640029	61.665	0.66238	61.656	61.377	62.04	-0.0085564					52	23	3	0	0	0	0.089483	1	15181	15181		59.368	27.063	1	741250			37436	6075	22004	22005	45209	45209					-0.011185609023186771
RIAFKGKGQYV	11	Unmodified	_RIAFKGKGQYV_					0	0	0			REV__ENST00000470741.1_1_22:43015781-43027088:-|nuORF	REV__ENST00000470741.1_1_22:43015781-43027088:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8713989257812	2	633.869497	1265.72444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.35	1	113.35	112.85	113.85	0								0	0	0	0.38126	1	29442	29442		1.1933	0	1		+		37437	14172	22005	22006	45210	45210					0.10220760451056776
RIAGLAVSL	9	Unmodified	_RIAGLAVSL_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.28692626953125	2	450.287277	898.560001	0.14501	6.5297E-05	-0.11281	-5.0796E-05	0.032205	1.4501E-05	450.28709357369024	55.367	0.58833	55.367	55.119	55.707	0					44	21	3	0	0	0	0.034444	1	13200	13200		58.679	1.2075	1	680100			37438	5607	22006	22007	45211	45211					0.10666368031081674
RIAGLAVSL	9	Unmodified	_RIAGLAVSL_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2874450683594	2	450.287277	898.560001	0.38605	0.00017383	-0.2293	-0.00010325	0.15675	7.0581E-05	450.2870361407842	55.274	0.61317	55.345	55.164	55.777	0.070885					43	22	3	0	0	0	0.019245	1	13206	13206		65.235	7.7637	1	608490			37439	5607	22006	22007	45212	45212					0.10666368031081674
RIAGLAVSL	9	Unmodified	_RIAGLAVSL_					0	0	0		nc|ENSG00000162736|Q92542-2|NCSTN;ENSG00000162736|ENST00000294785|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.28692626953125	2	450.287277	898.560001	0.22792	0.00010263	-0.25906	-0.00011665	-0.031139	-1.4021E-05	450.2870727984141	55.403	0.56859	55.384	55.181	55.75	-0.019081					34	20	2	0	0	0	0.034444	1	13211	13211		58.679	1.2075	1	650570			37440	5607	22006	22007	45213	45213					0.10666368031081674
RIASYYYLK	9	Unmodified	_RIASYYYLK_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.8240356445312	2	588.824224	1175.63389	0.39368	0.00023181	-0.47813	-0.00028154	-0.084453	-4.9728E-05	588.8240909478076	37.305	0.46334	37.392	37.142	37.605	0.08741					34	16	3	0	0	0	0.25714	1	7678	7678		15.248	0	1	358370			37441	2426	22007	22008	45214	45214					0.0531029140274768
RIAVPVRKLF	10	Unmodified	_RIAVPVRKLF_					0	0	0		ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.8937377929688	2	599.892775	1197.771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.04	1	113.04	112.54	113.54	0								0	0	0	0.38202	1	29365	29365		0.40072	0	1				37442	380	22008	22009	45215	45215					0.18002245072966616
RICERLLCS	9	Unmodified	_RICERLLCS_					0	0	0			REV__ENST00000435706.6_2_3:25686795-25686942:-|nuORF	REV__ENST00000435706.6_2_3:25686795-25686942:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.7865600585938	2	546.786261	1091.55797	0.34883	0.00019074	-0.43137	-0.00023586	-0.082533	-4.5128E-05	546.7863361018689	17.946	1.2707	17.946	17.568	18.839	0					121	43	4	0	0	0	0.30623	1	1909	1909		7.9102	7.9102	1	2955000	+		37443	20998	22009	22010	45216	45216					0.015852479593149837
RICTDIGKGWR	11	Unmodified	_RICTDIGKGWR_					0	0	0		nc|ENSG00000226777|Q9NZY2|FAM30A	nc|ENSG00000226777|Q9NZY2|FAM30A	nc|ENSG00000226777|Q9NZY2|FAM30A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8821716308594	3	435.567918	1303.68192	-0.2757	-0.00012008	-0.2432	-0.00010593	-0.51889	-0.00022601	435.56769132903213	15.649	0.50247	15.585	15.333	15.836	-0.064414					29	16	2	0	0	0	0.33336	1	1085	1085		1.1098	0.33322	1	108660			37444	12952	22010	22011	45217	45217					0.04223042051125958
RIDSQNPQFL	10	Unmodified	_RIDSQNPQFL_					0	0	0		ENST00000437270.1_1_9:140535772-140535991:-|nuORF	ENST00000437270.1_1_9:140535772-140535991:-|nuORF	ENST00000437270.1_1_9:140535772-140535991:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.5472106933594	3	406.547288	1216.62004	0.28523	0.00011596	0.37296	0.00015163	0.65818	0.00026758	406.54741293019487	33.495	0.85425	33.561	33.266	34.12	0.06636					78	30	4	0	0	0	0.3258	1	6488	6488		10.899	1.6552	1	953020			37445	10530	22011	22012	45218	45218					0.020390139036635446
RIFAPNHVVAK	11	Unmodified	_RIFAPNHVVAK_					0	0	0		ENST00000600238.1_1_19:17972170-17973061:+|nuORF;ENST00000602216.1_1_19:17970765-17972392:+|nuORF;ENSG00000105640|ENST00000222247|RPL18A	ENST00000600238.1_1_19:17972170-17973061:+|nuORF	ENST00000600238.1_1_19:17972170-17973061:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.200439453125	3	417.915535	1250.72478	-0.12173	-5.0874E-05	-0.76226	-0.00031856	-0.88399	-0.00036943	417.91494073962826	27.089	0.31826	27.089	27.035	27.354	0					14	10	2	0	0	0	0.33303	1	4586	4586		2.4348	0.52841	1	44468			37446	2000	22012	22013	45219	45219					0.10944180170872642
RIFAPNHVVAK	11	Unmodified	_RIFAPNHVVAK_					0	0	0		ENST00000600238.1_1_19:17972170-17973061:+|nuORF;ENST00000602216.1_1_19:17970765-17972392:+|nuORF;ENSG00000105640|ENST00000222247|RPL18A	ENST00000600238.1_1_19:17972170-17973061:+|nuORF	ENST00000600238.1_1_19:17972170-17973061:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.3113403320312	2	626.369664	1250.72478	0.19952	0.00012497	0.15599	9.7708E-05	0.35551	0.00022268	626.8711645473422	25.85	0.65028	25.85	25.591	26.242	0					43	22	3	0	0	0	0.32466	1	4178	4178		29.841	29.841	1	301240			37447	2000	22012	22013	45220	45220					0.10944180170872642
RIFAPNHVVAK	11	Unmodified	_RIFAPNHVVAK_					0	0	0		ENST00000600238.1_1_19:17972170-17973061:+|nuORF;ENST00000602216.1_1_19:17970765-17972392:+|nuORF;ENSG00000105640|ENST00000222247|RPL18A	ENST00000600238.1_1_19:17972170-17973061:+|nuORF	ENST00000600238.1_1_19:17972170-17973061:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.3111572265625	2	626.369664	1250.72478	-0.22912	-0.00014351	0.032366	2.0273E-05	-0.19675	-0.00012324	626.369698100385	25.849	0.57072	25.81	25.582	26.153	-0.038671					29	19	2	0	0	0	0.31599	1	4177	4177		36.506	31.209	1	305990			37448	2000	22012	22013	45221	45221					0.10944180170872642
RIFAPNHVVAK	11	Unmodified	_RIFAPNHVVAK_					0	0	0		ENST00000600238.1_1_19:17972170-17973061:+|nuORF;ENST00000602216.1_1_19:17970765-17972392:+|nuORF;ENSG00000105640|ENST00000222247|RPL18A	ENST00000600238.1_1_19:17972170-17973061:+|nuORF	ENST00000600238.1_1_19:17972170-17973061:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.3113403320312	2	626.369664	1250.72478	0.029428	1.8433E-05	0.03903	2.4447E-05	0.068457	4.2879E-05	626.3695232947034	25.825	0.52368	25.803	25.635	26.158	-0.022238					33	18	2	0	0	0	0.31969	1	4159	4159		28.495	28.495	1	246640			37449	2000	22012	22013	45222	45222					0.10944180170872642
RIFDLGRKK	9	Unmodified	_RIFDLGRKK_					0	0	0		ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.2619018554688	2	566.851107	1131.68766	0.2175	0.00012329	0.17814	0.00010098	0.39564	0.00022427	566.8511183514414	21.727	0.44444	21.678	21.461	21.905	-0.049377					23	15	2	0	0	0	0.26188	1	2898	2898		1.6526	0	1	89023			37450	4761	22013	22014	45223	45223					0.12708508625132708
RIFDLGRKK	9	Unmodified	_RIFDLGRKK_					0	0	0		ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	566.851107	1131.68766	0.27349	0.00015503	0.27498	0.00015587	0.54846	0.0003109	566.8511162694053	21.662	0.32951	21.662	21.401	21.731	0	-0.013479	0.00022653	NaN	1.6526	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54492			37451	4761	22013	22014							0.12708508625132708
RIFDLGRKK	9	Unmodified	_RIFDLGRKK_					0	0	0		ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000489200.5_1_X:153627802-153628283:+|nuORF;ENST00000482732.1_1_X:153627802-153628024:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	566.851107	1131.68766	0.4607	0.00026115	-0.26115	-0.00014803	0.19954	0.00011311	566.8508438717112	21.788	0.41516	21.688	21.417	21.832	-0.10034	0.011653	-0.00038129	NaN	1.6526	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55722			37452	4761	22013	22014							0.12708508625132708
RIFEPPPPK	9	Unmodified	_RIFEPPPPK_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8140258789062	2	540.813659	1079.61277	0.57044	0.0003085	-0.056502	-3.0557E-05	0.51394	0.00027794	540.813533271297	28.955	1.6119	28.955	28.333	29.945	0					138	57	3	0	0	0	0.01251	3	5083	5083;5133;5181		75.571	35.331	1	924800			37453	2261	22014	22015	45224;45225;45226	45224					0.07614326093880663
RIFEPPPPK	9	Unmodified	_RIFEPPPPK_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8138427734375	2	540.813659	1079.61277	0.46354	0.00025069	0.018724	1.0126E-05	0.48226	0.00026081	540.8136193086485	28.926	1.6281	28.921	28.359	29.987	-0.0042572					130	56	3	0	0	0	0.0083763	4	5081	5081;5131;5179;5276		81.915	34.321	1	1041800			37454	2261	22014	22015	45227;45228;45229;45230	45227					0.07614326093880663
RIFEPPPPK	9	Unmodified	_RIFEPPPPK_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.81396484375	2	540.813659	1079.61277	0.38135	0.00020624	0.069782	3.7739E-05	0.45114	0.00024398	540.8136340802032	28.941	1.6669	28.954	28.307	29.974	0.013474					144	58	3	0	0	0	0.0045319	4	5082	5082;5126;5175;5289		90.135	36.928	1	962750			37455	2261	22014	22015	45231;45232;45233;45234	45231					0.07614326093880663
RIFETLQDK	9	Unmodified	_RIFETLQDK_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3168334960938	2	575.316763	1148.61897	0.33434	0.00019235	0.011272	6.485E-06	0.34561	0.00019884	575.3165756657716	32.731	0.62255	32.731	32.469	33.091	0					40	21	2	0	0	0	0.13671	1	6288	6288		32.898	16.332	1	341400			37456	1535	22015	22016	45235	45235					0.05060799534749094
RIFETLQDK	9	Unmodified	_RIFETLQDK_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3167724609375	2	575.316763	1148.61897	0.51029	0.00029358	-0.24047	-0.00013835	0.26981	0.00015523	575.3162779428264	32.637	0.52568	32.693	32.421	32.946	0.055309					29	18	2	0	0	0	0.10812	1	6266	6266		37.075	9.8514	1	310220			37457	1535	22015	22016	45236	45236					0.05060799534749094
RIFETLQDK	9	Unmodified	_RIFETLQDK_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3164672851562	2	575.316763	1148.61897	0.25695	0.00014783	-0.30684	-0.00017653	-0.04989	-2.8703E-05	575.3163676778242	32.668	0.57195	32.722	32.441	33.013	0.054371					35	20	2	0	0	0	0.0058682	1	6241	6241		85.764	26.396	1	299480			37458	1535	22015	22016	45237	45237					0.05060799534749094
RIFGQANTTLK	11	Unmodified	_RIFGQANTTLK_					0	0	0		nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.8565063476562	2	624.856586	1247.69862	0.14279	8.9225E-05	0.778	0.00048614	0.92079	0.00057536	624.8568050212117	31.313	0.4084	31.313	31.118	31.526	0					30	14	3	0	0	0	0.29388	1	5854	5854		22.775	9.1601	1	250390			37459	4980	22016	22017	45238	45238					0.08467866208729902
RIFGQANTTLK	11	Unmodified	_RIFGQANTTLK_					0	0	0		nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.8567504882812	2	624.856586	1247.69862	0.131	8.1856E-05	0.62029	0.00038759	0.75129	0.00046945	624.8565756325191	31.21	0.37638	31.251	31.07	31.447	0.040989					30	13	3	0	0	0	0.08061	1	5818	5818		44.392	15.897	1	299160			37460	4980	22016	22017	45239	45239					0.08467866208729902
RIFGQANTTLK	11	Unmodified	_RIFGQANTTLK_					0	0	0		nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	nc|ENSG00000151726|P33121-2|ACSL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	624.856586	1247.69862	-0.24937	-0.00015582	0.88207	0.00055117	0.6327	0.00039535	624.8568809862211	31.298	0.38475	31.34	31.13	31.515	0.042366	0.039077	0.00013976	NaN	44.392	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303950			37461	4980	22016	22017							0.08467866208729902
RIFKHFTRK	9	Unmodified	_RIFKHFTRK_					0	0	0		PRKCH|p.T601Lfs*9|1|0.28|ENSG00000027075|chr14:61547781-61547781|G/-|frameshift_variant;ENSG00000027075|ENST00000332981|PRKCH	PRKCH|p.T601Lfs*9|1|0.28|ENSG00000027075|chr14:61547781-61547781|G/-|frameshift_variant	PRKCH|p.T601Lfs*9|1|0.28|ENSG00000027075|chr14:61547781-61547781|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.19329833984375	3	411.584008	1231.73019	-0.068345	-2.813E-05	1.042	0.00042886	0.97364	0.00040073	411.58435529760925	17.171	0.81847	17.171	16.81	17.628	0					83	28	4	0	0	0	0.25871	1	1587	1587		6.1918	2.0023	1	247910			37462	540	22017	22018	45240	45240					0.12359903753326762
RIFKHFTRK	9	Unmodified	_RIFKHFTRK_					0	0	0		PRKCH|p.T601Lfs*9|1|0.28|ENSG00000027075|chr14:61547781-61547781|G/-|frameshift_variant;ENSG00000027075|ENST00000332981|PRKCH	PRKCH|p.T601Lfs*9|1|0.28|ENSG00000027075|chr14:61547781-61547781|G/-|frameshift_variant	PRKCH|p.T601Lfs*9|1|0.28|ENSG00000027075|chr14:61547781-61547781|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5841369628906	3	411.584008	1231.73019	0.1513	6.2275E-05	0.75989	0.00031276	0.91119	0.00037503	411.58425566286655	17.377	0.95658	17.317	16.887	17.844	-0.060429					94	33	4	0	0	0	0.2953	1	1667	1667		9.544	5.3545	1	237320			37463	540	22017	22018	45241	45241					0.12359903753326762
RIFKHFTRK	9	Unmodified	_RIFKHFTRK_					0	0	0		PRKCH|p.T601Lfs*9|1|0.28|ENSG00000027075|chr14:61547781-61547781|G/-|frameshift_variant;ENSG00000027075|ENST00000332981|PRKCH	PRKCH|p.T601Lfs*9|1|0.28|ENSG00000027075|chr14:61547781-61547781|G/-|frameshift_variant	PRKCH|p.T601Lfs*9|1|0.28|ENSG00000027075|chr14:61547781-61547781|G/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.584008	1231.73019	-0.013446	-5.5341E-06	1.1415	0.00046984	1.1281	0.0004643	411.5843773264737	17.454	0.84847	17.336	16.909	17.757	-0.11739	0.061436	0.00023085	NaN	6.1918	83	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296390			37464	540	22017	22018							0.12359903753326762
RIFQEQVEK	9	Unmodified	_RIFQEQVEK_					0	0	0		nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000185551|ENST00000394166|NR2F2;ENSG00000175745|ENST00000327111|NR2F1	nc|ENSG00000185551|P24468-3|NR2F2	nc|ENSG00000185551|P24468-3|NR2F2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.822509765625	2	588.822212	1175.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.931	1	25.908	25.408	26.408	-0.022238								0	0	0	0.21571	1	4199	4199		17.443	5.202	1				37465	6880	22018	22019	45242	45242					0.04908201909051968
RIFQKFLQR	9	Unmodified	_RIFQKFLQR_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.583984375	3	412.583897	1234.72986	0.084703	3.4947E-05	-0.58989	-0.00024338	-0.50519	-0.00020843	412.58380774564614	36.529	0.79169	36.529	36.332	37.124	0					78	27	4	0	0	0	0.24833	1	7502	7502		16.566	9.9355	1	537990			37466	5309	22019	22020	45243	45243					0.1218848403350421
RIFQKFLQR	9	Unmodified	_RIFQKFLQR_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.23468017578125	3	412.583897	1234.72986	0.37612	0.00015518	-1.1187	-0.00046154	-0.74254	-0.00030636	412.58370690001607	36.411	0.74271	36.494	36.284	37.027	0.082355					78	26	5	0	0	0	0.152	1	7414	7414		37.075	29.973	1	577080			37467	5309	22019	22020	45244	45244					0.1218848403350421
RIFQKFLQR	9	Unmodified	_RIFQKFLQR_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.58392333984375	3	412.583897	1234.72986	0.62085	0.00025615	-0.67627	-0.00027902	-0.055421	-2.2866E-05	412.5836004219096	36.446	0.83532	36.532	36.244	37.08	0.08625					64	29	3	0	0	0	0.27303	1	7454	7454		12.873	6.2422	1	556390			37468	5309	22019	22020	45245	45245					0.1218848403350421
RIFSGAVTR	9	Unmodified	_RIFSGAVTR_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A;ENST00000477110.6_1_X:302544-308028:-|nuORF;ENST00000468169.6_1_X:299440-306311:-|nuORF;nc|ENSG00000073711|Q06190-3|PPP2R3A;ENSG00000167393|ENST00000390665|PPP2R3B;nc|ENSG00000073711|Q06190-2|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A;nc|ENSG00000073711|Q06190-2|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.7931823730469	2	503.793258	1005.57196	0.18361	9.2501E-05	0.33775	0.00017016	0.52136	0.00026266	503.7932671594475	26.166	0.80442	26.166	25.925	26.729	0					54	27	3	0	0	0	0.048637	1	4277	4277		53.404	13.447	1	560020			37469	1004;12585	22020	22021	45246	45246					0.06939984774282948
RIFSGAVTR	9	Unmodified	_RIFSGAVTR_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A;ENST00000477110.6_1_X:302544-308028:-|nuORF;ENST00000468169.6_1_X:299440-306311:-|nuORF;nc|ENSG00000073711|Q06190-3|PPP2R3A;ENSG00000167393|ENST00000390665|PPP2R3B;nc|ENSG00000073711|Q06190-2|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A;nc|ENSG00000073711|Q06190-2|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.79302978515625	2	503.793258	1005.57196	0.14829	7.4706E-05	0.21041	0.000106	0.3587	0.00018071	503.7932204428919	26.146	0.64443	26.108	25.902	26.547	-0.038671					53	22	3	0	0	0	0.01909	1	4281	4281		65.474	10.7	1	588090			37470	1004;12585	22020	22021	45247	45247					0.06939984774282948
RIFSGAVTR	9	Unmodified	_RIFSGAVTR_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A;ENST00000477110.6_1_X:302544-308028:-|nuORF;ENST00000468169.6_1_X:299440-306311:-|nuORF;nc|ENSG00000073711|Q06190-3|PPP2R3A;ENSG00000167393|ENST00000390665|PPP2R3B;nc|ENSG00000073711|Q06190-2|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A;nc|ENSG00000073711|Q06190-2|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.79302978515625	2	503.793258	1005.57196	0.33765	0.0001701	0.047383	2.3871E-05	0.38503	0.00019397	503.79319011437804	26.218	0.81672	26.196	25.97	26.786	-0.022238					58	28	3	0	0	0	0.07944	1	4269	4269		41.956	1.9982	1	622240			37471	1004;12585	22020	22021	45248	45248					0.06939984774282948
RIFTQNGLVK	10	Unmodified	_RIFTQNGLVK_					0	0	0		ENST00000469404.1_1_3:136649317-136649422:+|nuORF	ENST00000469404.1_1_3:136649317-136649422:+|nuORF	ENST00000469404.1_1_3:136649317-136649422:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8634643554688	2	588.348397	1174.68224	0.48237	0.0002838	-0.7336	-0.00043161	-0.25122	-0.00014781	588.3479532634701	33.572	0.4698	33.572	33.31	33.78	0					37	16	3	0	0	0	0.10933	2	6510	6510;6543		46.022	24.485	1	327310			37472	10856	22021	22022	45249;45250	45249					0.10188785042623749
RIFTQNGLVK	10	Unmodified	_RIFTQNGLVK_					0	0	0		ENST00000469404.1_1_3:136649317-136649422:+|nuORF	ENST00000469404.1_1_3:136649317-136649422:+|nuORF	ENST00000469404.1_1_3:136649317-136649422:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.8638305664062	2	588.348397	1174.68224	0.52507	0.00030892	-0.48315	-0.00028426	0.041913	2.4659E-05	588.3480750529721	33.393	0.54657	33.46	33.239	33.786	0.066357					38	19	3	0	0	0	0.26049	1	6459	6459		35.612	14.075	1	342320			37473	10856	22021	22022	45251	45251					0.10188785042623749
RIFTQNGLVK	10	Unmodified	_RIFTQNGLVK_					0	0	0		ENST00000469404.1_1_3:136649317-136649422:+|nuORF	ENST00000469404.1_1_3:136649317-136649422:+|nuORF	ENST00000469404.1_1_3:136649317-136649422:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.3482666015625	2	588.348397	1174.68224	0.19977	0.00011753	-0.14494	-8.5277E-05	0.054821	3.2254E-05	588.3483557987892	33.4	0.55298	33.467	33.271	33.824	0.066704					38	19	3	0	0	0	0.18709	2	6497	6446;6497		34.222	17.109	1	303560			37474	10856	22021	22022	45252;45253	45253					0.10188785042623749
RIFVYFITK	9	Unmodified	_RIFVYFITK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.85302734375	2	593.852784	1185.69102	0.5099	0.00030281	-0.11977	-7.1126E-05	0.39013	0.00023168	593.8526437757077	55.22	0.8131	55.22	54.974	55.787	0					66	29	3	0	0	0	0.0069773	1	13158	13158		100.71	56.936	1	1397100			37475	6752	22022	22023	45254	45254					0.10559758679096376
RIFVYFITK	9	Unmodified	_RIFVYFITK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8529663085938	2	593.852784	1185.69102	0.69471	0.00041256	-0.24433	-0.00014509	0.45039	0.00026746	593.8526201737645	55.149	0.95786	55.219	54.922	55.88	0.070885					79	35	4	0	0	0	0.013196	1	13125	13125		91.085	54.579	1	1524600			37476	6752	22022	22023	45255	45255					0.10559758679096376
RIFVYFITK	9	Unmodified	_RIFVYFITK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.85302734375	2	593.852784	1185.69102	0.45066	0.00026763	-0.34307	-0.00020373	0.10759	6.3893E-05	593.8525850301212	55.378	0.80414	55.359	55.08	55.884	-0.019081					52	29	2	0	0	0	0.0069773	1	13201	13201		91.085	61.244	1	1829800			37477	6752	22022	22023	45256	45256					0.10559758679096376
RIGGISGIFK	10	Unmodified	_RIGGISGIFK_					0	0	0		ENST00000463982.2_1_3:137890290-137893637:-|nuORF;DBR1|p.F196Sfs*10|1|0.15|ENSG00000138231|chr3:138167208-138167208|A/-|frameshift_variant;ENSG00000138231|ENST00000260803|DBR1	ENST00000463982.2_1_3:137890290-137893637:-|nuORF	ENST00000463982.2_1_3:137890290-137893637:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.319580078125	2	524.319109	1046.62366	0.46551	0.00024407	0.7619	0.00039948	1.2274	0.00064356	524.3195652332824	43.615	0.87275	43.615	43.333	44.206	0					92	31	5	0	0	0	0.0055648	1	9607	9607		88.364	32.187	1	3705700			37478	256	22023	22024	45257	45257					0.10221728468172842
RIGGISGIFK	10	Unmodified	_RIGGISGIFK_					0	0	0		ENST00000463982.2_1_3:137890290-137893637:-|nuORF;DBR1|p.F196Sfs*10|1|0.15|ENSG00000138231|chr3:138167208-138167208|A/-|frameshift_variant;ENSG00000138231|ENST00000260803|DBR1	ENST00000463982.2_1_3:137890290-137893637:-|nuORF	ENST00000463982.2_1_3:137890290-137893637:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3192749023438	2	524.319109	1046.62366	0.61795	0.00032401	0.34704	0.00018196	0.96499	0.00050596	524.3192884311272	43.324	0.84791	43.401	43.1	43.947	0.077515					83	30	4	0	0	0	0.016317	1	9481	9481		88.364	25.791	1	3590400			37479	256	22023	22024	45258	45258					0.10221728468172842
RIGGISGIFK	10	Unmodified	_RIGGISGIFK_					0	0	0		ENST00000463982.2_1_3:137890290-137893637:-|nuORF;DBR1|p.F196Sfs*10|1|0.15|ENSG00000138231|chr3:138167208-138167208|A/-|frameshift_variant;ENSG00000138231|ENST00000260803|DBR1	ENST00000463982.2_1_3:137890290-137893637:-|nuORF	ENST00000463982.2_1_3:137890290-137893637:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.3194580078125	2	524.319109	1046.62366	0.52217	0.00027378	0.48633	0.00025499	1.0085	0.00052878	524.3193296862113	43.312	0.90732	43.396	43.088	43.995	0.083992					95	33	5	0	0	0	0.01045	1	9461	9461		88.364	23.129	1	3536700			37480	256	22023	22024	45259	45259					0.10221728468172842
RIGWSKKMT	9	Unmodified	_RIGWSKKMT_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.245361328125	2	553.810593	1105.60663	0.46557	0.00025784	-1.3145	-0.00072796	-0.8489	-0.00047013	554.3106538216066	36.702	0.162	36.789	36.706	36.868	0.08741					8	5	2	0	0	0	0.25938	1	7468	7468		4.3292	0	1	63223	+		37481	15882	22024	22025	45260	45260					0.058054845907236086
RIHGVGFKK	9	Unmodified	_RIHGVGFKK_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2695922851562	2	521.319443	1040.62433	0.11084	5.7785E-05	0.4762	0.00024825	0.58705	0.00030604	521.3191806751893	15.352	0.32229	15.288	15.069	15.391	-0.064413					19	10	3	0	0	0	0.25706	1	981	981		6.7232	1.9672	1	47508			37482	951	22025	22026	45261	45261					0.10564567907886158
RIHGVGFKK	9	Unmodified	_RIHGVGFKK_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000480540.1_1_14:59261390-59261744:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.319443	1040.62433	0.15676	8.172E-05	-0.027255	-1.4209E-05	0.1295	6.7511E-05	521.3191130346186	15.219	0.3368	15.219	15.012	15.348	0	-0.015493	-0.00021918	NaN	6.7232	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40669			37483	951	22025	22026							0.10564567907886158
RIHKEASPNRI	11	Unmodified	_RIHKEASPNRI_					0	0	0		ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.9212951660156	3	440.921349	1319.74222	0.30676	0.00013526	-0.61961	-0.0002732	-0.31285	-0.00013794	440.92119103289565	29.103	0.85159	29.103	28.699	29.551	0					68	30	4	0	0	0	0.37255	1	5185	5185		14.838	1.303	1	422700			37484	2379	22026	22027	45262	45262					0.095134757058986
RIHKWSWMWLR	11	Unmodified	_RIHKWSWMWLR_					0	0	0			REV__VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant	REV__VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7637329101562	3	533.622357	1597.84524	0.33965	0.00018124	0.23951	0.00012781	0.57916	0.00030905	533.6225059941582	42.568	0.38301	42.66	42.47	42.853	0.091362					23	13	2	0	0	0	0.33326	1	9304	9304		1.4551	0.24029	1	272960	+		37485	18784	22027	22028	45263	45263					0.07023264892836778
RIHLIKWPD	9	Unmodified	_RIHLIKWPD_					0	0	0		nc|ENSG00000172159|A2A2Y4-3|FRMD3;nc|ENSG00000172159|A2A2Y4-5|FRMD3;nc|ENSG00000172159|A2A2Y4-2|FRMD3;ENSG00000172159|ENST00000304195|FRMD3	nc|ENSG00000172159|A2A2Y4-3|FRMD3	nc|ENSG00000172159|A2A2Y4-3|FRMD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3424072265625	2	589.345658	1176.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.99	1	119.99	119.49	120.49	0								0	0	0	0.2672	1	30937	30937		0.52476	0.066424	1				37486	6606	22028	22029	45264	45264					0.0954910625082448
RIIDEVVNK	9	Unmodified	_RIIDEVVNK_					0	0	0		nc|ENSG00000112208|O95816-2|BAG2;ENSG00000112208|ENST00000370693|BAG2	nc|ENSG00000112208|O95816-2|BAG2	nc|ENSG00000112208|O95816-2|BAG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7584838867188	2	543.319306	1084.62406	0.36164	0.00019649	0.15901	8.6393E-05	0.52065	0.00028288	543.3193391522905	30.965	0.57518	30.993	30.81	31.385	0.027946					44	20	3	0	0	0	0.23693	1	5726	5726		21.59	10.791	1	404990			37487	2421	22029	22030	45265	45265					0.08513103397376653
RIIDLVLQK	9	Unmodified	_RIIDLVLQK_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3564453125	2	549.355691	1096.69683	0.53377	0.00029323	0.20696	0.00011369	0.74073	0.00040692	549.3556954106156	49.174	0.98174	49.174	48.912	49.894	0					94	35	4	0	0	0	0.003673	2	11287	11287;11335		96.936	35.578	1	2980300			37488	3725	22030	22031	45266;45267	45266					0.1523485719076234
RIIDLVLQK	9	Unmodified	_RIIDLVLQK_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3562622070312	2	549.355691	1096.69683	0.44974	0.00024707	0.28085	0.00015428	0.73058	0.00040135	549.3557290704606	49.207	0.91554	49.252	49.016	49.932	0.044891					98	33	4	0	0	0	0.0013924	2	11297	11297;11344		117.76	42	1	3488400			37489	3725	22030	22031	45268;45269	45268					0.1523485719076234
RIIDLVLQK	9	Unmodified	_RIIDLVLQK_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3563232421875	2	549.355691	1096.69683	0.30822	0.00016932	0.38311	0.00021046	0.69133	0.00037978	549.3557720085241	49.192	0.90688	49.224	48.954	49.861	0.032043					90	32	4	0	0	0	0.0013924	3	11273	11273;11318;11359		117.76	42	1	3468000			37490	3725	22030	22031	45270;45271;45272	45270					0.1523485719076234
RIIEETLALK	10	Unmodified	_RIIEETLALK_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000489598.5_1_2:219082193-219099125:+|nuORF;ENST00000491780.5_1_2:219082193-219100082:+|nuORF;ENST00000465395.5_1_2:219082193-219103574:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.3638305664062	2	593.363713	1184.71287	0.26459	0.000157	0.096031	5.6981E-05	0.36062	0.00021398	593.3636992443048	42.682	0.92415	42.682	42.383	43.307	0					88	33	4	0	0	0	0.00039794	2	9297	9297;9345		128.87	67.268	1	2535100			37491	5682	22031	22032	45273;45274	45273					0.1279051863702989
RIIEETLALK	10	Unmodified	_RIIEETLALK_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000489598.5_1_2:219082193-219099125:+|nuORF;ENST00000491780.5_1_2:219082193-219100082:+|nuORF;ENST00000465395.5_1_2:219082193-219103574:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.3637084960938	2	593.363713	1184.71287	0.33201	0.000197	-0.026323	-1.5619E-05	0.30569	0.00018138	593.3636332992588	42.482	0.86792	42.567	42.295	43.163	0.085197					83	31	4	0	0	0	9.1646E-09	2	9227	9227;9281		168.9	107.3	1	2873700			37492	5682	22031	22032	45275;45276	45275					0.1279051863702989
RIIEETLALK	10	Unmodified	_RIIEETLALK_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000489598.5_1_2:219082193-219099125:+|nuORF;ENST00000491780.5_1_2:219082193-219100082:+|nuORF;ENST00000465395.5_1_2:219082193-219103574:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.3638916015625	2	593.363713	1184.71287	0.35549	0.00021093	-0.0055544	-3.2958E-06	0.34993	0.00020764	593.3636628770773	42.401	0.8932	42.492	42.23	43.123	0.091358					84	31	4	0	0	0	3.3846E-05	2	9242	9194;9242		135.87	82.47	1	2884700			37493	5682	22031	22032	45277;45278	45278					0.1279051863702989
RIIHTGEKF	9	Unmodified	_RIIHTGEKF_					0	0	0		ENSG00000169131|ENST00000335815|ZNF354A	ENSG00000169131|ENST00000335815|ZNF354A	ENSG00000169131|ENST00000335815|ZNF354A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2915649414062	2	550.81419	1099.61383	0.37076	0.00020422	0.19733	0.00010869	0.5681	0.00031292	550.814228763193	32.886	0.32789	32.941	32.818	33.146	0.054371					18	11	2	0	0	0	0.24993	1	6315	6315		13.042	2.9685	1	171850			37494	6330	22032	22033	45279	45279					0.06800540462813842
RIILFFSRFLF	11	Unmodified	_RIILFFSRFLF_					0	0	0		ENST00000353801.7_1_6:44214858-44216363:+|nuORF	ENST00000353801.7_1_6:44214858-44216363:+|nuORF	ENST00000353801.7_1_6:44214858-44216363:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.95892333984375	3	486.958852	1457.85473	0.26648	0.00012976	-0.011268	-5.4872E-06	0.25521	0.00012428	486.95878676955243	91.799	1.5704	91.89	91.179	92.749	0.090668					332	108	4	0	0	0	0.48173	1	24547	24547		0.50596	0.50596	1	2274200			37495	9586	22033	22034	45280	45280					0.14411356450000312
RIILFFSRFLF	11	Unmodified	_RIILFFSRFLF_					0	0	0		ENST00000353801.7_1_6:44214858-44216363:+|nuORF	ENST00000353801.7_1_6:44214858-44216363:+|nuORF	ENST00000353801.7_1_6:44214858-44216363:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.9590759277344	3	486.958852	1457.85473	0.21451	0.00010446	0.1096	5.3371E-05	0.32411	0.00015783	486.9589824545252	93.428	4.5574	93.515	92.623	97.181	0.08667					1047	403	4	0	0	0	0.48173	2	24744	24744;25243		0.50596	0.50596	1	5654000			37496	9586	22033	22034	45281;45282	45281					0.14411356450000312
RIIPRPFVA	9	Unmodified	_RIIPRPFVA_					0	0	0		nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644	nc|ENSG00000122482|Q9H582-2|ZNF644	nc|ENSG00000122482|Q9H582-2|ZNF644	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.796142578125	2	534.837468	1067.66038	0.956	0.0005113	-0.16867	-9.0212E-05	0.78732	0.00042109	534.837169155583	50.518	0.3942	50.563	50.372	50.766	0.044891					15	13	2	0	0	0	0.25526	1	11768	11768		7.9102	0.62092	1	150020			37497	3044	22034	22035	45283	45283					0.1292602508476648
RIIPRPFVA	9	Unmodified	_RIIPRPFVA_					0	0	0		nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644	nc|ENSG00000122482|Q9H582-2|ZNF644	nc|ENSG00000122482|Q9H582-2|ZNF644	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	534.837468	1067.66038	1.0834	0.00057943	-0.40552	-0.00021689	0.67786	0.00036254	534.8371278792671	50.59	0.30278	50.61	50.437	50.74	0.020691	0.023781	-9.3627E-05	NaN	7.9102	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101650			37498	3044	22034	22035							0.1292602508476648
RIKCVTRIQ	9	Unmodified	_RIKCVTRIQ_					0	0	0		nc|ENSG00000105982|Q9H0A6-4|RNF32;nc|ENSG00000105982|Q9H0A6-2|RNF32;ENSG00000105982|ENST00000317955|RNF32	nc|ENSG00000105982|Q9H0A6-4|RNF32	nc|ENSG00000105982|Q9H0A6-4|RNF32	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8372192382812	2	558.837143	1115.65973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.019	1	11.922	11.422	12.422	-0.096607								0	0	0	0.2489	1	4	4		6.7232	0.51738	1				37499	2043	22035	22036	45284	45284					0.10652862373376593
RIKKEPQSPR	10	Unmodified	_RIKKEPQSPR_					0	0	0		nc|ENSG00000175832|P43268-2|ETV4;ENSG00000175832|ENST00000319349|ETV4	nc|ENSG00000175832|P43268-2|ETV4	nc|ENSG00000175832|P43268-2|ETV4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.371826171875	2	619.870028	1237.7255	-0.057748	-3.5796E-05	-0.26006	-0.0001612	-0.31781	-0.000197	619.8694425647374	97.597	0.96609	97.597	97.024	97.991	0					189	100	3	0	0	0	0.32132	1	25999	25999		1.4819	0	1	195890			37500	6887	22036	22037	45285	45285					0.11614974819917734
RIKQQAQALR	10	Unmodified	_RIKQQAQALR_					0	0	0			REV__ENSG00000166813|ENST00000394412|KIF7	REV__ENSG00000166813|ENST00000394412|KIF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.369384765625	2	606.370195	1210.72584	0.27565	0.00016714	-1.1335	-0.00068731	-0.85783	-0.00052016	606.3691768996562	107.46	0.033745	107.46	107.44	107.48	0.0067062					7	4	2	0	0	0	0.40854	1	28357	28357		0.40072	0	1	2047300	+		37501	17341	22037	22038	45286	45286					0.12890394539772387
RILEVPYA	8	Unmodified	_RILEVPYA_					0	0	0		nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6;ENST00000487787.5_1_1:202275897-202288332:+|nuORF;nc|ENSG00000133067|Q9HBX8-1|LGR6	nc|ENSG00000133067|Q9HBX8-2|LGR6	nc|ENSG00000133067|Q9HBX8-2|LGR6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.78680419921875	2	480.779285	959.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.281	1	13.214	12.714	13.714	-0.067496								0	0	0	0.37992	1	377	377		0.79363	0	1				37502	3691	22038	22039	45287	45287					0.06262661794175983
RILFFNTPK	9	Unmodified	_RILFFNTPK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.3348999023438	2	568.334759	1134.65496	0.3913	0.00022239	-0.20882	-0.00011868	0.18247	0.00010371	568.3345821931241	48.578	1.2028	48.578	48.205	49.408	0					133	42	4	0	0	0	4.216E-07	2	11125	11078;11125		163.69	84.09	1	7252600			37503	1486	22039	22040	45288;45289	45289					0.09302301502248156
RILFFNTPK	9	Unmodified	_RILFFNTPK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.3348999023438	2	568.334759	1134.65496	0.6336	0.0003601	-0.4219	-0.00023978	0.2117	0.00012032	568.3344557912811	48.612	1.7041	48.657	48.227	49.932	0.044891					166	62	4	0	0	0	4.1496E-11	2	11115	11073;11115		189.73	110.14	1	7109000			37504	1486	22039	22040	45290;45291	45291					0.09302301502248156
RILFFNTPK	9	Unmodified	_RILFFNTPK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.3348999023438	2	568.334759	1134.65496	0.37056	0.0002106	-0.10445	-5.9361E-05	0.26611	0.00015124	568.3346274612185	48.497	1.3949	48.541	48.218	49.613	0.04332					137	50	4	0	0	0	4.216E-07	2	11094	11052;11094		163.69	84.09	1	7401700			37505	1486	22039	22040	45292;45293	45293					0.09302301502248156
RILGPGLNK	9	Unmodified	_RILGPGLNK_					0	0	0		ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENST00000478340.2_1_6:35437033-35438524:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.3056640625	2	484.306001	966.597449	0.29922	0.00014492	-1.483	-0.00071824	-1.1838	-0.00057332	484.3056447166597	26.253	0.42967	26.231	26.043	26.472	-0.022236					31	14	3	0	0	0	0.23007	1	4307	4307		19.257	1.1106	1	73733			37506	8118	22040	22041	45294	45294					0.11281459296708363
RILKFLKLFI	10	Unmodified	_RILKFLKLFI_					0	0	0		nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1;ENST00000546531.5_1_12:49396684-49399341:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1;ENST00000546531.5_1_12:49396684-49399341:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.96038818359375	3	430.960193	1289.85875	-0.47249	-0.00020362	0.66377	0.00028606	0.19128	8.2435E-05	430.96032814393976	35.379	1.4144	35.379	34.892	36.307	0					184	51	5	0	0	0	0.41512	1	7137	7137		0.69767	0.69767	1	2798900			37507	7261;11762	22041	22042	45295	45295					0.22541445943716099
RILKFLKLFI	10	Unmodified	_RILKFLKLFI_					0	0	0		nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1;ENST00000546531.5_1_12:49396684-49399341:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1;ENST00000546531.5_1_12:49396684-49399341:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.96038818359375	3	430.960193	1289.85875	-0.47787	-0.00020594	0.63854	0.00027519	0.16067	6.9243E-05	430.96032604315576	35.29	1.4089	35.366	34.843	36.252	0.075306					168	50	5	0	0	0	0.41512	1	7109	7109		0.69767	0.69767	1	3138700			37508	7261;11762	22041	22042	45296	45296					0.22541445943716099
RILKFLKLFI	10	Unmodified	_RILKFLKLFI_					0	0	0		nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1;ENST00000546531.5_1_12:49396684-49399341:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1;ENST00000546531.5_1_12:49396684-49399341:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	430.960193	1289.85875	-0.7158	-0.00030848	0.91377	0.0003938	0.19798	8.5319E-05	430.9604495108155	35.255	1.4262	35.332	34.837	36.263	0.077377	-0.026803	0.00021891	NaN	0.69767	170	51	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2560100			37509	7261;11762	22041	22042							0.22541445943716099
RILLANAKN	9	Unmodified	_RILLANAKN_					0	0	0			REV__ENSG00000088256|ENST00000078429|GNA11	REV__ENSG00000088256|ENST00000078429|GNA11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.28363037109375	2	506.816733	1011.61891	-0.010242	-5.1907E-06	0.40431	0.00020491	0.39407	0.00019972	506.81709183862944	13.643	0.40208	13.643	13.365	13.767	0					22	13	3	0	0	0	0.26168	1	410	410		1.8442	1.1539	1	49149	+		37510	14003	22042	22043	45297	45297					0.11356844325393922
RILLPIVQK	9	Unmodified	_RILLPIVQK_					0	0	0		nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000121988|ENST00000264159|ZRANB3;nc|ENSG00000121988|Q5FWF4-5|ZRANB3	nc|ENSG00000121988|Q5FWF4-3|ZRANB3	nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7986450195312	2	540.368601	1078.72265	0.78096	0.00042201	-1.3144	-0.00071027	-0.53345	-0.00028826	540.3677415763417	45.613	0.62965	45.613	45.315	45.945	0					46	22	3	0	0	0	0.24289	1	10215	10215		18.146	16.494	1	388350			37511	3025	22043	22044	45298	45298					0.18643751433069156
RILLPIVQK	9	Unmodified	_RILLPIVQK_					0	0	0		nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000121988|ENST00000264159|ZRANB3;nc|ENSG00000121988|Q5FWF4-5|ZRANB3	nc|ENSG00000121988|Q5FWF4-3|ZRANB3	nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.798583984375	2	540.368601	1078.72265	0.67185	0.00036305	-0.044966	-2.4298E-05	0.62689	0.00033875	540.368605537389	45.549	0.58935	45.609	45.336	45.926	0.059837					36	20	3	0	0	0	0.24289	1	10179	10179		18.146	10.236	1	390610			37512	3025	22043	22044	45299	45299					0.18643751433069156
RILLPIVQK	9	Unmodified	_RILLPIVQK_					0	0	0		nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000121988|ENST00000264159|ZRANB3;nc|ENSG00000121988|Q5FWF4-5|ZRANB3	nc|ENSG00000121988|Q5FWF4-3|ZRANB3	nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7986450195312	2	540.368601	1078.72265	0.69461	0.00037535	-0.09842	-5.3183E-05	0.59619	0.00032216	540.3684499891519	45.59	0.48257	45.655	45.358	45.84	0.065048					37	17	3	0	0	0	0.24848	1	10165	10165		13.906	13.448	1	391850			37513	3025	22043	22044	45300	45300					0.18643751433069156
RILNNYRTK	9	Unmodified	_RILNNYRTK_					0	0	0			REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3436889648438	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.96	1	113.96	113.46	114.46	0								0	0	0	0.26734	1	29584	29584		0.45834	0	1		+		37514	14994	22044	22045	45301	45301					0.09147016757128767
RILNNYRTK	9	Unmodified	_RILNNYRTK_					0	0	0			REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.34228515625	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.79	1	116.79	116.29	117.29	0								0	0	0	0.26734	1	30222	30222		0.45834	0	1		+		37515	14994	22044	22045	45302	45302					0.09147016757128767
RILNNYRTK	9	Unmodified	_RILNNYRTK_					0	0	0			REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3405151367188	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.92	1	114.9	114.4	115.4	-0.019096								0	0	0	0.26734	1	29818	29818		0.45834	0	1		+		37516	14994	22044	22045	45303	45303					0.09147016757128767
RILNNYRTK	9	Unmodified	_RILNNYRTK_					0	0	0			REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3435668945312	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.7	1	115.68	115.18	116.18	-0.020988								0	0	0	0.26734	1	29996	29996		0.45834	0	1		+		37517	14994	22044	22045	45304	45304					0.09147016757128767
RILNNYRTK	9	Unmodified	_RILNNYRTK_					0	0	0			REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3441162109375	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.66	1	116.64	116.14	117.14	-0.022781								0	0	0	0.26734	1	30216	30216		0.45834	0	1		+		37518	14994	22044	22045	45305	45305					0.09147016757128767
RILNNYRTK	9	Unmodified	_RILNNYRTK_					0	0	0			REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3427124023438	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.92	1	116.9	116.4	117.4	-0.022781								0	0	0	0.26734	1	30277	30277		0.45834	0	1		+		37519	14994	22044	22045	45306	45306					0.09147016757128767
RILNNYRTK	9	Unmodified	_RILNNYRTK_					0	0	0			REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3441772460938	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.7	1	117.67	117.17	118.17	-0.024147								0	0	0	0.26734	1	30453	30453		0.45834	0	1		+		37520	14994	22044	22045	45307	45307					0.09147016757128767
RILNNYRTK	9	Unmodified	_RILNNYRTK_					0	0	0			REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3433227539062	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.43	1	113.44	112.94	113.94	0.014824								0	0	0	0.26734	1	29512	29512		0.45834	0	1		+		37521	14994	22044	22045	45308	45308					0.09147016757128767
RILNNYRTK	9	Unmodified	_RILNNYRTK_					0	0	0			REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	REV__ENST00000560511.5_1_15:78923416-78927882:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3414916992188	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.82	1	119.85	119.35	120.35	0.027756								0	0	0	0.26734	1	30975	30975		0.45834	0	1		+		37522	14994	22044	22045	45309	45309					0.09147016757128767
RILPKVLEV	9	Unmodified	_RILPKVLEV_					0	0	0		nc|ENSG00000144908|O75891-2|ALDH1L1;ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1;nc|ENSG00000144908|O75891-4|ALDH1L1;ENST00000473607.5_1_3:125854214-125879740:-|nuORF	nc|ENSG00000144908|O75891-2|ALDH1L1	nc|ENSG00000144908|O75891-2|ALDH1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7879638671875	2	533.852784	1065.69102	0.53214	0.00028408	-0.29776	-0.00015896	0.23438	0.00012512	533.8525220072248	50.052	0.58996	50.052	49.843	50.433	0					31	21	2	0	0	0	0.23235	1	11567	11567		11.495	2.1116	1	326530			37523	4622	22045	22046	45310	45310					0.1607975867912046
RILPKVLEV	9	Unmodified	_RILPKVLEV_					0	0	0		nc|ENSG00000144908|O75891-2|ALDH1L1;ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1;nc|ENSG00000144908|O75891-4|ALDH1L1;ENST00000473607.5_1_3:125854214-125879740:-|nuORF	nc|ENSG00000144908|O75891-2|ALDH1L1	nc|ENSG00000144908|O75891-2|ALDH1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7882080078125	2	533.852784	1065.69102	0.85038	0.00045398	-0.74089	-0.00039553	0.10949	5.8449E-05	533.8523002115653	50.111	0.81015	50.132	49.876	50.686	0.020691					43	29	2	0	0	0	0.24688	1	11593	11593		14.838	4.0143	1	375020			37524	4622	22045	22046	45311	45311					0.1607975867912046
RILQEHEQIKK	11	Unmodified	_RILQEHEQIKK_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7666015625	3	474.612292	1420.81505	0.096834	4.5958E-05	-0.20659	-9.8049E-05	-0.10975	-5.2091E-05	474.9464288766453	17.434	0.38626	17.434	17.242	17.628	0					21	13	2	0	0	0	0.3331	1	1622	1622		2.2527	1.2392	1	32852			37525	2134	22046	22047	45312	45312					0.12147184708624081
RILQEHEQIKK	11	Unmodified	_RILQEHEQIKK_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.76666259765625	3	474.612292	1420.81505	0.048028	2.2795E-05	-0.50045	-0.00023752	-0.45243	-0.00021473	474.6121382224039	17.631	0.37144	17.513	17.323	17.694	-0.11739					18	12	2	0	0	0	0.3325	1	1698	1698		4.1166	2.787	1	36515			37526	2134	22046	22047	45313	45313					0.12147184708624081
RILQEHEQIKK	11	Unmodified	_RILQEHEQIKK_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.76666259765625	3	474.612292	1420.81505	0.18945	8.9916E-05	-0.3321	-0.00015762	-0.14265	-6.7704E-05	474.61214882864647	17.559	0.34651	17.498	17.33	17.676	-0.060431					21	11	2	0	0	0	0.33284	1	1655	1655		3.3557	2.246	1	32523			37527	2134	22046	22047	45314	45314					0.12147184708624081
RILSGPFVQK	10	Unmodified	_RILSGPFVQK_					0	0	0		ENSG00000159131|ENST00000381815|GART;ENST00000424203.5_1_21:34876433-34900844:-|nuORF	ENSG00000159131|ENST00000381815|GART	ENSG00000159131|ENST00000381815|GART	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.8460083007812	2	572.84549	1143.67643	0.50789	0.00029094	-0.12959	-7.4236E-05	0.3783	0.00021671	572.8452258968013	37.068	0.50777	37.068	36.7	37.207	0					36	17	3	0	0	0	0.36015	1	7606	7606		10.8	0	1	162080			37528	5387	22047	22048	45315	45315					0.11033686530981868
RILSGVVTK	9	Unmodified	_RILSGVVTK_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.81365966796875	2	486.813659	971.612765	0.19022	9.2602E-05	-0.14705	-7.1588E-05	0.043167	2.1014E-05	486.813577736327	26.975	1.2804	26.975	26.673	27.954	0					108	44	4	0	0	0	0.0010659	2	4531	4483;4531		121.93	43.78	1	2892400			37529	4449	22048	22049	45316;45317	45317					0.12582326093900065
RILSGVVTK	9	Unmodified	_RILSGVVTK_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.8136901855469	2	486.813659	971.612765	0.16786	8.1714E-05	-0.081027	-3.9445E-05	0.086829	4.2269E-05	486.8136012379585	26.99	1.4423	26.969	26.681	28.123	-0.021412					119	50	4	0	0	0	0.0013573	2	4533	4482;4533		118.21	40.06	1	3455000			37530	4449	22048	22049	45318;45319	45319					0.12582326093900065
RILSGVVTK	9	Unmodified	_RILSGVVTK_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.8136901855469	2	486.813659	971.612765	0.31275	0.00015225	-0.21078	-0.00010261	0.10198	4.9643E-05	486.8135452140425	26.991	1.1564	26.98	26.681	27.837	-0.01156					118	40	5	0	0	0	0.0010659	2	4535	4488;4535		121.93	43.78	1	3332500			37531	4449	22048	22049	45320;45321	45321					0.12582326093900065
RILSRKYRLLM	11	Unmodified	_RILSRKYRLLM_					0	0	0			REV__ENST00000450253.6_1_4:99801895-99802249:-|nuORF	REV__ENST00000450253.6_1_4:99801895-99802249:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.6344299316406	3	483.634263	1447.88096	0.10723	5.1859E-05	0.3744	0.00018107	0.48163	0.00023293	483.6344001180857	93.421	0.22109	93.421	93.311	93.533	0					42	20	3	0	0	0	0.48486	1	24867	24867		0.094841	0	1	271680	+		37532	21112	22049	22050	45322	45322					0.17493302349839723
RILSRKYRLLM	11	Unmodified	_RILSRKYRLLM_					0	0	0			REV__ENST00000450253.6_1_4:99801895-99802249:-|nuORF	REV__ENST00000450253.6_1_4:99801895-99802249:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	483.634263	1447.88096	0.10723	5.1859E-05	0.3744	0.00018107	0.48163	0.00023293	483.6344001180857	93.421	0.22109	93.421	93.311	93.533	0	0	0	NaN	0.094841	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271680	+		37533	21112	22049	22050							0.17493302349839723
RILTDILEV	9	Unmodified	_RILTDILEV_					0	0	0		ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930;ENST00000483374.1_1_22:45593059-45593908:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.3244018554688	2	536.324057	1070.63356	0.49044	0.00026303	0.13702	7.3487E-05	0.62746	0.00033652	536.324046829916	66.869	1.1412	66.869	66.369	67.51	0					99	39	4	0	0	0	0.069258	1	16758	16758		45.74	10.808	1	1375100			37534	1581	22050	22051	45323	45323					0.10106871682910423
RILTDILEV	9	Unmodified	_RILTDILEV_					0	0	0		ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930;ENST00000483374.1_1_22:45593059-45593908:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.3244018554688	2	536.324057	1070.63356	0.33738	0.00018095	-0.12663	-6.7915E-05	0.21075	0.00011303	536.3241092852866	66.782	0.92001	66.866	66.467	67.387	0.083832					74	32	3	0	0	0	0.026579	2	16717	16717;16762		61.602	15.902	1	1408500			37535	1581	22050	22051	45324;45325	45324					0.10106871682910423
RILTDILEV	9	Unmodified	_RILTDILEV_					0	0	0		ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930;ENST00000483374.1_1_22:45593059-45593908:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.32421875	2	536.324057	1070.63356	0.30622	0.00016423	0.46823	0.00025112	0.77444	0.00041535	536.3241405898807	66.932	1.2309	66.919	66.278	67.509	-0.013596					82	43	3	0	0	0	0.086462	1	16754	16754		40.239	2.0636	1	1185000			37536	1581	22050	22051	45326	45326					0.10106871682910423
RIMGNFLRSI	10	Unmodified	_RIMGNFLRSI_					0	0	0		ENST00000332180.9_1_12:105501612-105504968:+|nuORF	ENST00000332180.9_1_12:105501612-105504968:+|nuORF	ENST00000332180.9_1_12:105501612-105504968:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.8428344726562	2	603.842425	1205.6703	0.53244	0.00032151	0.031887	1.9255E-05	0.56433	0.00034077	603.8423343988229	29.131	1.0856	29.143	28.831	29.917	0.012266					73	37	3	0	0	0	0.40403	1	5268	5268		2.7352	0.23671	1	268830			37537	9447	22051	22052	45327	45327					0.07568845027799398
RINAQYLEV	9	Unmodified	_RINAQYLEV_					0	0	0		nc|ENSG00000092036|Q9H6D7-2|HAUS4;nc|ENSG00000092036|Q9H6D7-3|HAUS4;nc|ENSG00000092036|Q9H6D7-4|HAUS4;ENSG00000092036|ENST00000541587|HAUS4;ENST00000554063.1_1_14:23416808-23417238:-|nuORF	nc|ENSG00000092036|Q9H6D7-2|HAUS4	nc|ENSG00000092036|Q9H6D7-2|HAUS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3041381835938	2	553.303655	1104.59276	0.39455	0.00021831	1.201	0.00066453	1.5956	0.00088284	553.3039701894704	46.984	0.99701	47.037	46.629	47.626	0.052574					72	36	3	0	0	0	0.047483	1	10647	10647		53.833	7.8118	1	1251600			37538	1415	22052	22053	45328	45328					0.04464530363270569
RIPLLICPLG	10	Unmodified	_RIPLLICPLG_					0	0	0			REV__ENST00000369408.9_1_6:90305635-90305698:+|nuORF	REV__ENST00000369408.9_1_6:90305635-90305698:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8426513671875	2	547.841362	1093.66817	0.80443	0.0004407	1.4009	0.00076747	2.2053	0.0012082	547.8419383521157	36.164	1.6813	36.251	35.292	36.973	0.08625					77	42	3	0	0	0	0.33268	2	7278	7278;7299		15.847	1.0089	1	884640	+		37539	20355	22053	22054	45329;45330	45329					0.1250841628998387
RIPPVAVRL	9	Unmodified	_RIPPVAVRL_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENST00000535717.1_1_12:6679844-6680280:-|nuORF	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.7956237792969	2	510.837468	1019.66038	0.41669	0.00021286	3.3058	0.0016887	3.7225	0.0019016	510.8372832764263	44.209	0.61869	44.278	44.147	44.765	0.068573					55	22	4	0	0	0	0.23784	1	9833	9833		13.906	0	1	290910			37540	2373	22054	22055	45331	45331					0.15134025084728364
RIPPVAVRL	9	Unmodified	_RIPPVAVRL_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENST00000535717.1_1_12:6679844-6680280:-|nuORF	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.278564453125	2	510.837468	1019.66038	0.33731	0.00017231	-0.097072	-4.9588E-05	0.24024	0.00012272	510.8374265418618	43.756	1.2417	43.834	42.914	44.155	0.077515					75	45	2	0	0	0	0.24688	1	9488	9488		14.838	0	1	307310			37541	2373	22054	22055	45332	45332					0.15134025084728364
RIPQPATSL	9	Unmodified	_RIPQPATSL_					0	0	0			REV__nc|ENSG00000100083|Q9UJY5-4|GGA1	REV__nc|ENSG00000100083|Q9UJY5-4|GGA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7872009277344	2	491.787641	981.56073	-0.74772	-0.00036772	-0.080502	-3.959E-05	-0.82822	-0.00040731	491.78757050867176	35.023	0.66591	35.098	34.763	35.429	0.075306					47	23	3	0	0	0	0.20881	1	6956	6956		21.537	0	1	295890	+		37542	14156	22055	22056	45333	45333					0.06921162680123416
RIQDRRLPP	9	Unmodified	_RIQDRRLPP_					0	0	0		ENST00000425673.5_1_19:39903285-39903747:+|nuORF	ENST00000425673.5_1_19:39903285-39903747:+|nuORF	ENST00000425673.5_1_19:39903285-39903747:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8432006835938	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.72	1	110.71	110.21	111.21	-0.013939								0	0	0	0.264	1	28867	28867		1.8442	0	1				37543	10407	22056	22057	45334	45334					0.10422436476960684
RIQDVLFLY	9	Unmodified	_RIQDVLFLY_					0	0	0		nc|ENSG00000167930|Q9H0X4-2|FAM234A;ENSG00000167930|ENST00000399932|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3059692382812	2	583.832049	1165.64954	0.38415	0.00022428	-0.95481	-0.00055745	-0.57065	-0.00033317	583.8320199151141	72.94	0.66666	72.94	72.696	73.363	0					60	23	3	0	0	0	0.22674	1	18624	18624		22.736	6.8891	1	396190			37544	6222	22057	22058	45335	45335					0.07334577919800722
RIQDVLFLY	9	Unmodified	_RIQDVLFLY_					0	0	0		nc|ENSG00000167930|Q9H0X4-2|FAM234A;ENSG00000167930|ENST00000399932|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3060302734375	2	583.832049	1165.64954	0.23941	0.00013977	-1.3262	-0.00077428	-1.0868	-0.00063451	583.8322401538632	72.881	0.73772	72.935	72.681	73.419	0.053841					73	26	3	0	0	0	0.22674	1	18606	18606		22.736	3.4793	1	352100			37545	6222	22057	22058	45336	45336					0.07334577919800722
RIQDVLFLY	9	Unmodified	_RIQDVLFLY_					0	0	0		nc|ENSG00000167930|Q9H0X4-2|FAM234A;ENSG00000167930|ENST00000399932|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	nc|ENSG00000167930|Q9H0X4-2|FAM234A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3060913085938	2	583.832049	1165.64954	0.46502	0.0002715	-1.0476	-0.00061164	-0.58261	-0.00034015	583.8320843310204	72.951	0.71526	72.922	72.71	73.425	-0.029305					71	25	4	0	0	0	0.22674	1	18593	18593		22.736	2.2827	1	372440			37546	6222	22057	22058	45337	45337					0.07334577919800722
RIQEHFNKK	9	Unmodified	_RIQEHFNKK_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3357543945312	2	600.335821	1198.65709	0.14348	8.6135E-05	-0.083359	-5.0043E-05	0.06012	3.6092E-05	600.3357413802478	13.372	0.28333	13.372	13.254	13.537	0					22	9	3	0	0	0	0.25714	1	412	412		15.248	10.351	1	148570			37547	5297	22058	22059	45338	45338					0.06570730240059675
RIQEHFNKK	9	Unmodified	_RIQEHFNKK_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3360595703125	2	600.335821	1198.65709	0.14754	8.8572E-05	0.30557	0.00018344	0.4531	0.00027201	600.3359432219224	13.442	0.42113	13.343	13.217	13.638	-0.099291					29	14	4	0	0	0	0.25714	1	432	432		15.248	10.351	1	164690			37548	5297	22058	22059	45339	45339					0.06570730240059675
RIQEHFNKK	9	Unmodified	_RIQEHFNKK_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3358154296875	2	600.335821	1198.65709	-0.010738	-6.4466E-06	0.19735	0.00011848	0.18661	0.00011203	600.3359062053231	13.462	0.27347	13.394	13.275	13.549	-0.067496					22	9	3	0	0	0	0.28225	1	437	437		11.495	6.1978	1	151760			37549	5297	22058	22059	45340	45340					0.06570730240059675
RIQINPQNK	9	Unmodified	_RIQINPQNK_					0	0	0		ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8214111328125	2	555.822547	1109.63054	0.09681	5.3809E-05	-0.62303	-0.00034629	-0.52622	-0.00029248	555.8221698655577	19.081	0.48629	19.081	18.864	19.35	0					26	16	2	0	0	0	0.19747	1	2124	2124		24.021	11.78	1	72386			37550	3432	22059	22060	45341	45341					0.08011041348731851
RIQINPQNK	9	Unmodified	_RIQINPQNK_					0	0	0		ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8224487304688	2	555.822547	1109.63054	0.17782	9.8835E-05	-0.025673	-1.4269E-05	0.15214	8.4565E-05	555.8224167526284	19.222	0.5141	19.106	18.919	19.433	-0.11592					33	17	3	0	0	0	0.23767	1	2169	2169		18.146	9.9908	1	86754			37551	3432	22059	22060	45342	45342					0.08011041348731851
RIQINPQNK	9	Unmodified	_RIQINPQNK_					0	0	0		ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8223266601562	2	555.822547	1109.63054	0.10697	5.9458E-05	-0.15817	-8.7913E-05	-0.051194	-2.8455E-05	555.8223838994329	19.157	0.49242	19.101	18.931	19.423	-0.055693					33	16	3	0	0	0	0.23767	1	2162	2162		18.146	9.9908	1	100200			37552	3432	22059	22060	45343	45343					0.08011041348731851
RIQKLVNSRK	10	Unmodified	_RIQKLVNSRK_					0	0	0			REV__ENST00000495716.1_1_3:52407964-52408519:+|nuORF	REV__ENST00000495716.1_1_3:52407964-52408519:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.7559814453125	2	621.39367	1240.77279	0.22882	0.00014218	-0.8383	-0.00052091	-0.60948	-0.00037873	621.3930207230542	96.594	0.1442	96.589	96.485	96.629	-0.0055466					18	13	2	0	0	0	0.32169	1	25823	25823		0.35063	0.35063	1	75771	+		37553	21662	22060	22061	45344	45344					0.16203254090919472
RIQKSISQK	9	Unmodified	_RIQKSISQK_					0	0	0		ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	ENSG00000164105|ENST00000296504|SAP30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3328247070312	2	544.332747	1086.65094	0.17372	9.4563E-05	-0.18187	-9.8996E-05	-0.0081448	-4.4335E-06	544.3327501021167	12.847	0.29591	12.779	12.64	12.936	-0.067496					23	9	3	0	0	0	0.26807	1	258	258		13.615	2.8154	1	189960			37554	5790	22061	22062	45345	45345					0.11108212008548435
RIQQIIEGK	9	Unmodified	_RIQQIIEGK_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;OPA1|p.R842Ifs*2|1|0.3|ENSG00000198836|chr3:193664903-193664904|-/TATA|frameshift_variant	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.291259765625	2	542.827298	1083.64004	0.3891	0.00021121	-0.085591	-4.6461E-05	0.30351	0.00016475	542.8272831683893	26.737	0.48074	26.737	26.499	26.979	0					37	16	3	0	0	0	0.20381	1	4434	4434		29.841	7.1825	1	150450			37555	8137	22062	22063	45346	45346					0.10156809634258934
RIQQIIEGK	9	Unmodified	_RIQQIIEGK_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;OPA1|p.R842Ifs*2|1|0.3|ENSG00000198836|chr3:193664903-193664904|-/TATA|frameshift_variant	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.291748046875	2	542.827298	1083.64004	0.49436	0.00026835	-0.18186	-9.872E-05	0.3125	0.00016963	542.8271527882375	26.79	0.65163	26.769	26.478	27.13	-0.021412					41	22	3	0	0	0	0.23235	1	4446	4446		21.537	2.28	1	190090			37556	8137	22062	22063	45347	45347					0.10156809634258934
RIQQIIEGK	9	Unmodified	_RIQQIIEGK_					0	0	0		nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;OPA1|p.R842Ifs*2|1|0.3|ENSG00000198836|chr3:193664903-193664904|-/TATA|frameshift_variant	nc|ENSG00000198836|O60313-13|OPA1	nc|ENSG00000198836|O60313-13|OPA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.291748046875	2	542.827298	1083.64004	0.72578	0.00039397	-0.26934	-0.0001462	0.45644	0.00024777	542.8271572656513	26.748	0.50123	26.736	26.541	27.042	-0.011562					28	17	2	0	0	0	0.20381	1	4445	4445		23.79	3.2088	1	161330			37557	8137	22062	22063	45348	45348					0.10156809634258934
RIRAPEALRV	10	Unmodified	_RIRAPEALRV_					0	0	0			REV__HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	REV__HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.8668823242188	2	590.867289	1179.72002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.036	1	11.939	11.439	12.439	-0.096607								0	0	0	0.38209	1	9	9		0	0	1		+		37558	16164	22063	22064	45349	45349					0.1373529602808503
RIRDVINVF	9	Unmodified	_RIRDVINVF_					0	0	0		ENSG00000163660|ENST00000295926|CCNL1;ENST00000467081.1_1_3:156870794-156876755:-|nuORF;ENST00000471930.5_1_1:1328164-1333737:-|nuORF;nc|ENSG00000163660|Q9UK58-5|CCNL1;ENST00000471044.1_1_3:156876653-156877916:-|nuORF;nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000221978|Q96S94-4|CCNL2;CCNL1|p.P260Rfs*24|1|0.39|ENSG00000163660|chr3:157150165-157150165|G/-|frameshift_variant;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000221978|ENST00000400809|CCNL2	ENSG00000163660|ENST00000295926|CCNL1	ENSG00000163660|ENST00000295926|CCNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.33544921875	2	566.33529	1130.65603	0.23271	0.00013179	0.060892	3.4485E-05	0.2936	0.00016628	566.3353211862076	51.88	0.70522	51.88	51.619	52.324	0					56	25	3	0	0	0	0.010888	2	12116	12116;12167		78.06	47.424	1	1233300			37559	5718	22064	22065	45350;45351	45350					0.09592515871167961
RIRDVINVF	9	Unmodified	_RIRDVINVF_					0	0	0		ENSG00000163660|ENST00000295926|CCNL1;ENST00000467081.1_1_3:156870794-156876755:-|nuORF;ENST00000471930.5_1_1:1328164-1333737:-|nuORF;nc|ENSG00000163660|Q9UK58-5|CCNL1;ENST00000471044.1_1_3:156876653-156877916:-|nuORF;nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000221978|Q96S94-4|CCNL2;CCNL1|p.P260Rfs*24|1|0.39|ENSG00000163660|chr3:157150165-157150165|G/-|frameshift_variant;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000221978|ENST00000400809|CCNL2	ENSG00000163660|ENST00000295926|CCNL1	ENSG00000163660|ENST00000295926|CCNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.3352661132812	2	566.33529	1130.65603	0.40297	0.00022821	-0.11528	-6.5287E-05	0.28769	0.00016293	566.3351588582684	51.81	0.65877	51.857	51.647	52.305	0.046574					53	23	3	0	0	0	0.011693	1	12114	12114		76.825	45.556	1	1597100			37560	5718	22064	22065	45352	45352					0.09592515871167961
RIRDVINVF	9	Unmodified	_RIRDVINVF_					0	0	0		ENSG00000163660|ENST00000295926|CCNL1;ENST00000467081.1_1_3:156870794-156876755:-|nuORF;ENST00000471930.5_1_1:1328164-1333737:-|nuORF;nc|ENSG00000163660|Q9UK58-5|CCNL1;ENST00000471044.1_1_3:156876653-156877916:-|nuORF;nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000221978|Q96S94-4|CCNL2;CCNL1|p.P260Rfs*24|1|0.39|ENSG00000163660|chr3:157150165-157150165|G/-|frameshift_variant;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000221978|ENST00000400809|CCNL2	ENSG00000163660|ENST00000295926|CCNL1	ENSG00000163660|ENST00000295926|CCNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.33544921875	2	566.33529	1130.65603	0.051754	2.931E-05	0.2084	0.00011802	0.26015	0.00014733	566.3353572583449	52.004	0.70429	52.003	51.736	52.44	-0.00080872					62	25	3	0	0	0	0.0028542	2	12157	12157;12205		103.42	72.151	1	1375600			37561	5718	22064	22065	45353;45354	45353					0.09592515871167961
RIRKIQIYN	9	Unmodified	_RIRKIQIYN_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.3694458007812	2	602.369664	1202.72478	0.12764	7.6887E-05	-0.0098626	-5.9409E-06	0.11778	7.0947E-05	602.3696730144189	12.47	0.1845	12.47	12.397	12.582	0					11	5	3	0	0	0	0.35563	1	156	156		0.52476	0	1	34201	+		37562	16745	22065	22066	45355	45355					0.1315218017089137
RIRKIQIYN	9	Unmodified	_RIRKIQIYN_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	602.369664	1202.72478	0.12764	7.6887E-05	-0.0098626	-5.9409E-06	0.11778	7.0947E-05	602.3696730144189	12.47	0.1845	12.47	12.397	12.582	0	0.027579	9.9875E-05	NaN	0.52476	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34201	+		37563	16745	22065	22066							0.1315218017089137
RIRKIQIYN	9	Unmodified	_RIRKIQIYN_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	602.369664	1202.72478	-0.080137	-4.8272E-05	0.049525	2.9832E-05	-0.030612	-1.8439E-05	602.3697245664678	12.542	0.20277	12.474	12.377	12.579	-0.06806	0.03148	0.00017142	NaN	0.52476	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47255	+		37564	16745	22065	22066							0.1315218017089137
RIRQRWLWRFE	11	Unmodified	_RIRQRWLWRFE_					0	0	0			REV__ENSG00000152620|ENST00000381937|NADK2	REV__ENSG00000152620|ENST00000381937|NADK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2970886230469	4	412.235113	1644.91135	-0.23901	-9.8528E-05	-1.6448	-0.00067803	-1.8838	-0.00077656	412.23424572504985	31.379	0.51996	31.379	31.007	31.526	0					28	18	2	0	0	0	0.33352	1	5796	5796		0	0	1	81774	+		37565	16590	22066	22067	45356	45356					0.11468797059205826
RIRQRWLWRFE	11	Unmodified	_RIRQRWLWRFE_					0	0	0			REV__ENSG00000152620|ENST00000381937|NADK2	REV__ENSG00000152620|ENST00000381937|NADK2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		4	412.235113	1644.91135	0.10784	4.4456E-05	-1.9926	-0.00082144	-1.8848	-0.00077698	412.23388170892736	31.195	0.54825	31.236	30.959	31.507	0.040991	-0.071563	-0.00047427	NaN	0	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124860	+		37566	16590	22066	22067							0.11468797059205826
RISAIFSTF	9	Unmodified	_RISAIFSTF_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2903442382812	2	521.290017	1040.56548	0.59758	0.00031151	-0.11791	-6.1465E-05	0.47967	0.00025005	521.2900672140439	63.77	1.1453	63.77	63.225	64.37	0					74	41	3	0	0	0	0.058995	1	15809	15809		49.554	17.249	1	887910			37567	2042	22067	22068	45357	45357					0.0468204682290434
RISAIFSTF	9	Unmodified	_RISAIFSTF_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2901611328125	2	521.290017	1040.56548	0.5235	0.00027289	-0.11699	-6.0988E-05	0.4065	0.00021191	521.2900908199807	63.642	1.1655	63.738	63.2	64.366	0.095722					85	41	3	0	0	0	0.047483	1	15739	15739		53.833	13.875	1	876990			37568	2042	22067	22068	45358	45358					0.0468204682290434
RISAIFSTF	9	Unmodified	_RISAIFSTF_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2904052734375	2	521.290017	1040.56548	0.58995	0.00030753	-0.061657	-3.2141E-05	0.52829	0.00027539	521.2900974251952	63.795	0.9653	63.785	63.324	64.289	-0.0095329					76	34	3	0	0	0	0.047483	1	15799	15799		53.833	13.875	1	872690			37569	2042	22067	22068	45359	45359					0.0468204682290434
RISAVGPHLE	10	Unmodified	_RISAVGPHLE_					0	0	0			REV__ENSG00000148602|ENST00000372105|LRIT1	REV__ENSG00000148602|ENST00000372105|LRIT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.806396484375	2	539.803823	1077.59309	0.45253	0.00024428	1.9425	0.0010486	2.395	0.0012928	539.8048562930597	71.078	0.66324	71.139	70.8	71.463	0.060776					55	23	3	0	0	0	0.19885	1	18037	18037		32.786	0.4802	1	934060	+		37570	16430	22068	22069	45360	45360					0.057399500831252226
RISAVGPHLE	10	Unmodified	_RISAVGPHLE_					0	0	0			REV__ENSG00000148602|ENST00000372105|LRIT1	REV__ENSG00000148602|ENST00000372105|LRIT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8058471679688	2	539.803823	1077.59309	0.62645	0.00033816	2.0491	0.0011061	2.6755	0.0014443	539.8050262431904	71.179	0.8497	71.154	70.69	71.54	-0.024864					60	30	3	0	0	0	0.10145	2	18069	18035;18069		47.749	3.8904	1	1047000	+		37571	16430	22068	22069	45361;45362	45362					0.057399500831252226
RISHCPNI	8	Unmodified	_RISHCPNI_					0	0	0		ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7913513183594	2	470.245086	938.47562	0.31509	0.00014817	-0.84529	-0.00039749	-0.5302	-0.00024932	470.24487217535454	71.557	0.50259	71.53	71.236	71.738	-0.027275					27	17	2	0	0	0	0.26527	1	18110	18110		36.044	9.7029	1	425180			37572	5641	22069	22070	45363	45363					0.003920939426620862
RISHCPNI	8	Unmodified	_RISHCPNI_					0	0	0		ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	470.245086	938.47562	0.11288	5.3082E-05	-0.25814	-0.00012139	-0.14525	-6.8305E-05	470.2450271849753	71.438	0.6747	71.438	71.209	71.884	0	-0.041052	0.00020359	NaN	36.044	32	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365160			37573	5641	22069	22070							0.003920939426620862
RISHCPNI	8	Unmodified	_RISHCPNI_					0	0	0		ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	470.245086	938.47562	0.12821	6.029E-05	-0.39447	-0.0001855	-0.26626	-0.00012521	470.24495317095995	71.412	0.57644	71.469	71.206	71.783	0.056572	-0.0098774	7.5371E-05	NaN	36.044	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	499900			37574	5641	22069	22070							0.003920939426620862
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8153076171875	2	528.813659	1055.61277	0.53364	0.0002822	-0.51711	-0.00027345	0.016532	8.7422E-06	528.8143159791898	71.133	7.9201	71.133	70.301	78.221	0					639	286	6	0	0	0	0.00012746	30	18019	17870;17917;17967;18019;18070;18120;18163;18210;18260;18311;18361;18411;18460;18510;18560;18609;18662;18711;18819;18867;18961;19210;19271;19322;19370;19468;19889;20045;20154;20213		136.39	56.796	1	155660000			37575	537	22070	22071	45364;45365;45366;45367;45368;45369;45370;45371;45372;45373;45374;45375;45376;45377;45378;45379;45380;45381;45382;45383;45384;45385;45386;45387;45388;45389;45390;45391;45392;45393	45367					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.814208984375	2	528.813659	1055.61277	0.52093	0.00027547	0.21047	0.0001113	0.73139	0.00038677	528.8138701338909	82.083	0.95548	82.083	81.455	82.41	0					62	36	2	0	0	0	0.19905	3	21375	21282;21317;21375		23.79	13.716	1	239840			37576	537	22070	22071	45394;45395;45396	45396					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.813720703125	2	528.813659	1055.61277	0.77419	0.0004094	-0.23605	-0.00012483	0.53813	0.00028457	528.8136302875041	83.728	0.90962	83.728	83.148	84.057	0					53	35	2	0	0	0	0.26612	1	21958	21958		13.906	3.8321	1	256460			37577	537	22070	22071	45397	45397					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3157958984375	2	528.813659	1055.61277	0.48989	0.00025906	-0.60977	-0.00032246	-0.11989	-6.3397E-05	528.8133287578597	91.645	0.59361	91.645	91.305	91.898	0					65	43	2	0	0	0	0.24467	4	24329	24285;24315;24329;24358		17.113	7.039	1	95682			37578	537	22070	22071	45398;45399;45400;45401	45400					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8141479492188	2	528.813659	1055.61277	0.16796	8.8818E-05	-0.30034	-0.00015883	-0.13238	-7.0007E-05	528.8137082318947	97.751	0.56181	97.751	97.546	98.108	0					92	61	2	0	0	0	0.24467	1	26113	26113		17.113	7.039	1	111790			37579	537	22070	22071	45402	45402					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8136596679688	2	528.813659	1055.61277	0.10134	5.3589E-05	0.18781	9.9315E-05	0.28914	0.0001529	528.8138406101941	99.154	0.47278	99.154	99.044	99.517	0					95	59	2	0	0	0	0.27726	1	26606	26606		12.241	4.9514	1	102160			37580	537	22070	22071	45403	45403					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140869140625	2	528.813659	1055.61277	0.10068	5.3242E-05	0.069942	3.6986E-05	0.17062	9.0228E-05	528.8137284458164	100.83	0.45668	100.83	100.59	101.05	0					116	65	2	0	0	0	0.3208	1	26900	26900		5.7319	2.1354	1	78077			37581	537	22070	22071	45404	45404					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140258789062	2	528.813659	1055.61277	0.10062	5.3207E-05	0.33077	0.00017491	0.43138	0.00022812	528.8138476803035	101.69	0.493	101.69	101.47	101.96	0					91	64	2	0	0	0	0.27726	1	27149	27149		12.241	6.0349	1	97766			37582	537	22070	22071	45405	45405					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.814208984375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.514	1	78.514	78.014	79.014	0								0	0	0	0.21673	1	20317	20317		17.113	3.2068	1				37583	537	22070	22071	45406	45406					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140869140625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.704	1	78.704	78.204	79.204	0								0	0	0	0.19189	1	20375	20375		24.991	14.917	1				37584	537	22070	22071	45407	45407					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8142700195312	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.857	1	78.857	78.357	79.357	0								0	0	0	0.171	1	20422	20422		29.841	15.935	1				37585	537	22070	22071	45408	45408					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8142700195312	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.994	1	78.994	78.494	79.494	0								0	0	0	0.19189	1	20464	20464		24.991	14.917	1				37586	537	22070	22071	45409	45409					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.81396484375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.136	1	79.136	78.636	79.636	0								0	0	0	0.21673	1	20508	20508		17.113	3.2068	1				37587	537	22070	22071	45410	45410					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8135375976562	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.297	1	79.297	78.797	79.797	0								0	0	0	0.19189	1	20556	20556		24.991	14.917	1				37588	537	22070	22071	45411	45411					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8134155273438	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.525	1	79.525	79.025	80.025	0								0	0	0	0.21673	1	20626	20626		17.113	7.039	1				37589	537	22070	22071	45412	45412					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8133544921875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.688	1	79.688	79.188	80.188	0								0	0	0	0.20651	1	20676	20676		20.415	5.5763	1				37590	537	22070	22071	45413	45413					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8139038085938	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.366	1	80.366	79.866	80.866	0								0	0	0	0.20303	1	20884	20884		21.537	6.6987	1				37591	537	22070	22071	45414	45414					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140258789062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.829	1	80.829	80.329	81.329	0								0	0	0	0.21673	1	21028	21028		17.113	4.8722	1				37592	537	22070	22071	45415	45415					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140258789062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.956	1	80.956	80.456	81.456	0								0	0	0	0.20303	1	21067	21067		21.537	7.6309	1				37593	537	22070	22071	45416	45416					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8141479492188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.13	1	81.13	80.63	81.63	0								0	0	0	0.20303	1	21119	21119		21.537	7.6309	1				37594	537	22070	22071	45417	45417					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8135375976562	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.584	1	89.584	89.084	90.084	0								0	0	0	0.19932	1	23713	23713		22.736	7.898	1				37595	537	22070	22071	45418	45418					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.81396484375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.712	1	89.712	89.212	90.212	0								0	0	0	0.19932	1	23751	23751		22.736	10.496	1				37596	537	22070	22071	45419	45419					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8131713867188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.28	1	91.28	90.78	91.78	0								0	0	0	0.24446	1	24233	24233		8.1555	2.4237	1				37597	537	22070	22071	45420	45420					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8134155273438	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.43	1	100.43	99.933	100.93	0								0	0	0	0.25197	1	26837	26837		5.7319	0	1				37598	537	22070	22071	45421	45421					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8143310546875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.99	1	111.99	111.49	112.49	0								0	0	0	0.24446	1	29121	29121		8.1555	2.4237	1				37599	537	22070	22071	45422	45422					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8135986328125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.12	1	112.12	111.62	112.62	0								0	0	0	0.25197	1	29152	29152		5.7319	0	1				37600	537	22070	22071	45423	45423					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8143920898438	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.28	1	112.28	111.78	112.78	0								0	0	0	0.23182	1	29190	29190		12.241	4.0851	1				37601	537	22070	22071	45424	45424					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8141479492188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.4	1	112.4	111.9	112.9	0								0	0	0	0.25197	1	29218	29218		5.7319	0	1				37602	537	22070	22071	45425	45425					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.814208984375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.55	1	112.55	112.05	113.05	0								0	0	0	0.24446	1	29251	29251		8.1555	2.4237	1				37603	537	22070	22071	45426	45426					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8154296875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.67	1	112.67	112.17	113.17	0								0	0	0	0.25197	1	29279	29279		5.7319	0	1				37604	537	22070	22071	45427	45427					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8137817382812	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.73	1	112.73	112.23	113.23	0								0	0	0	0.25197	1	29293	29293		5.7319	0	1				37605	537	22070	22071	45428	45428					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8141479492188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.91	1	112.91	112.41	113.41	0								0	0	0	0.23182	1	29332	29332		12.241	6.0349	1				37606	537	22070	22071	45429	45429					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.813720703125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.05	1	113.05	112.55	113.55	0								0	0	0	0.23182	1	29368	29368		12.241	6.0349	1				37607	537	22070	22071	45430	45430					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140258789062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.14	1	113.14	112.64	113.64	0								0	0	0	0.21971	1	29391	29391		16.149	7.4037	1				37608	537	22070	22071	45431	45431					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8135986328125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.19	1	113.19	112.69	113.69	0								0	0	0	0.25197	1	29404	29404		5.7319	0	1				37609	537	22070	22071	45432	45432					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8143920898438	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.32	1	113.32	112.82	113.82	0								0	0	0	0.25197	1	29434	29434		5.7319	0	1				37610	537	22070	22071	45433	45433					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8141479492188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.34	1	113.34	112.84	113.84	0								0	0	0	0.24066	1	29438	29438		9.3831	3.6513	1				37611	537	22070	22071	45434	45434					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8142700195312	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.47	1	113.47	112.97	113.97	0								0	0	0	0.25331	1	29470	29470		5.2969	0.54088	1				37612	537	22070	22071	45435	45435					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8148193359375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.51	1	113.51	113.01	114.01	0								0	0	0	0.24616	1	29480	29480		7.609	1.8771	1				37613	537	22070	22071	45436	45436					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8146362304688	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.63	1	113.63	113.13	114.13	0								0	0	0	0.24446	1	29508	29508		8.1555	2.4237	1				37614	537	22070	22071	45437	45437					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140869140625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.64	1	113.64	113.14	114.14	0								0	0	0	0.24446	1	29510	29510		8.1555	2.4237	1				37615	537	22070	22071	45438	45438					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8134765625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.75	1	113.75	113.25	114.25	0								0	0	0	0.24446	1	29537	29537		8.1555	2.4237	1				37616	537	22070	22071	45439	45439					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140869140625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.77	1	113.77	113.27	114.27	0								0	0	0	0.25197	1	29543	29543		5.7319	0	1				37617	537	22070	22071	45440	45440					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8143920898438	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.89	1	113.89	113.39	114.39	0								0	0	0	0.25858	1	29568	29568		3.5965	0	1				37618	537	22070	22071	45441	45441					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8145141601562	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.03	1	114.03	113.53	114.53	0								0	0	0	0.25197	1	29601	29601		5.7319	0	1				37619	537	22070	22071	45442	45442					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.814697265625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.09	1	114.09	113.59	114.59	0								0	0	0	0.24446	1	29614	29614		8.1555	2.4237	1				37620	537	22070	22071	45443	45443					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8142700195312	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.17	1	114.17	113.67	114.67	0								0	0	0	0.25197	1	29628	29628		5.7319	0	1				37621	537	22070	22071	45444	45444					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8141479492188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.29	1	114.29	113.79	114.79	0								0	0	0	0.24446	1	29656	29656		8.1555	2.4237	1				37622	537	22070	22071	45445	45445					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.814697265625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.45	1	114.45	113.95	114.95	0								0	0	0	0.25197	1	29694	29694		5.7319	0	1				37623	537	22070	22071	45446	45446					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8143310546875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.57	1	114.57	114.07	115.07	0								0	0	0	0.25197	1	29720	29720		5.7319	0	1				37624	537	22070	22071	45447	45447					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8141479492188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.61	1	114.61	114.11	115.11	0								0	0	0	0.23182	1	29730	29730		12.241	6.0349	1				37625	537	22070	22071	45448	45448					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8142700195312	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.69	1	114.69	114.19	115.19	0								0	0	0	0.25197	1	29746	29746		5.7319	0	1				37626	537	22070	22071	45449	45449					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8138427734375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.78	1	114.78	114.28	115.28	0								0	0	0	0.25197	1	29768	29768		5.7319	0	1				37627	537	22070	22071	45450	45450					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.814453125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.92	1	114.92	114.42	115.42	0								0	0	0	0.24446	1	29798	29798		8.1555	2.4237	1				37628	537	22070	22071	45451	45451					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.81494140625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.92	1	114.92	114.42	115.42	0								0	0	0	0.25197	1	29800	29800		5.7319	0	1				37629	537	22070	22071	45452	45452					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8150024414062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.97	1	114.97	114.47	115.47	0								0	0	0	0.25197	1	29810	29810		5.7319	0	1				37630	537	22070	22071	45453	45453					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8148803710938	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.12	1	115.12	114.62	115.62	0								0	0	0	0.25858	1	29844	29844		3.5965	0	1				37631	537	22070	22071	45454	45454					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140258789062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.26	1	115.26	114.76	115.76	0								0	0	0	0.25197	1	29875	29875		5.7319	0	1				37632	537	22070	22071	45455	45455					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.813720703125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.61	1	115.61	115.11	116.11	0								0	0	0	0.25197	1	29956	29956		5.7319	0	1				37633	537	22070	22071	45456	45456					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140258789062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.87	1	115.87	115.37	116.37	0								0	0	0	0.25197	1	30016	30016		5.7319	0	1				37634	537	22070	22071	45457	45457					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8148803710938	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.14	1	116.14	115.64	116.64	0								0	0	0	0.25197	1	30076	30076		5.7319	0	1				37635	537	22070	22071	45458	45458					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8143920898438	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.21	1	116.21	115.71	116.71	0								0	0	0	0.24446	1	30092	30092		8.1555	2.4237	1				37636	537	22070	22071	45459	45459					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8148803710938	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.27	1	116.27	115.77	116.77	0								0	0	0	0.25197	1	30105	30105		5.7319	0	1				37637	537	22070	22071	45460	45460					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8150634765625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.48	1	116.48	115.98	116.98	0								0	0	0	0.25955	1	30155	30155		3.2813	0.28607	1				37638	537	22070	22071	45461	45461					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8136596679688	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.7	1	116.7	116.2	117.2	0								0	0	0	0.23413	1	30201	30201		11.495	5.7629	1				37639	537	22070	22071	45462	45462					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8148803710938	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.71	1	116.71	116.21	117.21	0								0	0	0	0.25197	1	30203	30203		5.7319	0	1				37640	537	22070	22071	45463	45463					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8143310546875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.75	1	116.75	116.25	117.25	0								0	0	0	0.25197	1	30212	30212		5.7319	0	1				37641	537	22070	22071	45464	45464					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8136596679688	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.78	1	116.78	116.28	117.28	0								0	0	0	0.25197	1	30221	30221		5.7319	0	1				37642	537	22070	22071	45465	45465					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8138427734375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.07	1	117.07	116.57	117.57	0								0	0	0	0.25197	1	30290	30290		5.7319	0	1				37643	537	22070	22071	45466	45466					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8146362304688	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.09	1	117.09	116.59	117.59	0								0	0	0	0.25197	1	30295	30295		5.7319	0	1				37644	537	22070	22071	45467	45467					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8145751953125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.23	1	117.23	116.73	117.73	0								0	0	0	0.24446	1	30325	30325		8.1555	2.4237	1				37645	537	22070	22071	45468	45468					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8135375976562	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.36	1	117.36	116.86	117.86	0								0	0	0	0.25197	1	30352	30352		5.7319	0	1				37646	537	22070	22071	45469	45469					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.81396484375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.43	1	117.43	116.93	117.93	0								0	0	0	0.25197	1	30369	30369		5.7319	0	1				37647	537	22070	22071	45470	45470					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8143310546875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.44	1	117.44	116.94	117.94	0								0	0	0	0.24446	1	30371	30371		8.1555	2.4237	1				37648	537	22070	22071	45471	45471					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8146362304688	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.52	1	117.52	117.02	118.02	0								0	0	0	0.25955	1	30390	30390		3.2813	0.28607	1				37649	537	22070	22071	45472	45472					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140258789062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.83	1	117.83	117.33	118.33	0								0	0	0	0.25331	1	30457	30457		5.2969	2.3016	1				37650	537	22070	22071	45473	45473					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8137817382812	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.88	1	117.88	117.38	118.38	0								0	0	0	0.25197	1	30469	30469		5.7319	0	1				37651	537	22070	22071	45474	45474					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.814208984375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.13	1	118.13	117.63	118.63	0								0	0	0	0.25955	1	30526	30526		3.2813	0.28607	1				37652	537	22070	22071	45475	45475					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140869140625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.18	1	118.18	117.68	118.68	0								0	0	0	0.25955	1	30536	30536		3.2813	0.28607	1				37653	537	22070	22071	45476	45476					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8142700195312	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.45	1	118.45	117.95	118.95	0								0	0	0	0.25197	1	30596	30596		5.7319	0	1				37654	537	22070	22071	45477	45477					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140869140625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.62	1	118.62	118.12	119.12	0								0	0	0	0.25955	1	30633	30633		3.2813	0.28607	1				37655	537	22070	22071	45478	45478					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.814453125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.79	1	118.79	118.29	119.29	0								0	0	0	0.25955	1	30675	30675		3.2813	0.28607	1				37656	537	22070	22071	45479	45479					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.81396484375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.27	1	119.27	118.77	119.77	0								0	0	0	0.25197	1	30782	30782		5.7319	0	1				37657	537	22070	22071	45480	45480					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.814453125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.36	1	119.36	118.86	119.86	0								0	0	0	0.25197	1	30801	30801		5.7319	0	1				37658	537	22070	22071	45481	45481					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8145141601562	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.81	1	119.81	119.31	120.31	0								0	0	0	0.25197	1	30894	30894		5.7319	0	1				37659	537	22070	22071	45482	45482					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8145141601562	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.95	1	119.95	119.45	120.45	0								0	0	0	0.25197	1	30927	30927		5.7319	0	1				37660	537	22070	22071	45483	45483					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2713623046875	2	528.813659	1055.61277	0.67237	0.00035556	-0.93258	-0.00049316	-0.2602	-0.0001376	528.8133375192054	82.567	0.91284	82.567	82.287	83.2	0					61	34	2	0	0	0	0.25612	1	21616	21616		8.1555	4.2111	1	230980			37661	537	22070	22071	45484	45484					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8143920898438	2	528.813659	1055.61277	0.41775	0.00022091	-0.35842	-0.00018954	0.059336	3.1378E-05	528.8143629926607	71.105	10.333	71.166	70.237	80.57	0.060783					742	382	6	0	0	0	0.0008224	41	17951	17853;17903;17951;18001;18052;18093;18138;18192;18238;18280;18323;18372;18421;18469;18513;18560;18611;18653;18704;18820;18935;19166;19218;19223;19274;19456;19857;19910;19986;20151;20213;20260;20325;20372;20422;20466;20509;20556;20651;20828;20888		125.04	77.289	1	181200000			37662	537	22070	22071	45485;45486;45487;45488;45489;45490;45491;45492;45493;45494;45495;45496;45497;45498;45499;45500;45501;45502;45503;45504;45505;45506;45507;45508;45509;45510;45511;45512;45513;45514;45515;45516;45517;45518;45519;45520;45521;45522;45523;45524;45525	45487					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8154907226562	2	528.813659	1055.61277	0.20928	0.00011067	0.37047	0.00019591	0.57975	0.00030658	528.8139419304551	81.821	0.66494	81.89	81.44	82.105	0.068993					50	29	2	0	0	0	0.22215	3	21275	21250;21275;21301		20.415	10.341	1	250860			37663	537	22070	22071	45526;45527;45528	45527					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8137817382812	2	528.813659	1055.61277	0.59632	0.00031534	-0.12846	-6.793E-05	0.46786	0.00024741	528.81363184612	83.929	0.96178	84.007	83.188	84.149	0.077095					50	37	2	0	0	0	0.24467	1	21916	21916		17.113	7.039	1	248590			37664	537	22070	22071	45529	45529					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8131103515625	2	528.813659	1055.61277	0.43087	0.00022785	-0.34694	-0.00018347	0.083931	4.4384E-05	528.8133535894233	91.453	0.44093	91.543	91.264	91.705	0.090668					47	34	3	0	0	0	0.20626	4	24279	24211;24236;24279;24284		22.736	7.898	1	187860			37665	537	22070	22071	45530;45531;45532;45533	45532					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8138427734375	2	528.813659	1055.61277	0.20153	0.00010657	0.061209	3.2368E-05	0.26274	0.00013894	528.8137720932573	99.285	0.41003	99.336	99.041	99.451	0.050896					81	54	2	0	0	0	0.27726	1	26528	26528		12.241	6.0349	1	148190			37666	537	22070	22071	45534	45534					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.813720703125	2	528.813659	1055.61277	0.20031	0.00010593	-0.033231	-1.7573E-05	0.16708	8.8354E-05	528.8137566949803	99.817	0.49049	99.856	99.439	99.929	0.039001					88	62	2	0	0	0	0.22215	1	26615	26615		20.415	10.341	1	115510			37667	537	22070	22071	45535	45535					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.81396484375	2	528.813659	1055.61277	0.20083	0.0001062	0.1613	8.5297E-05	0.36213	0.0001915	528.8139213757127	111.93	1.1407	111.91	111.62	112.76	-0.015617					187	136	2	0	0	0	0.29638	7	29181	29126;29134;29181;29200;29219;29253;29287		9.3831	5.4387	1	105350			37668	537	22070	22071	45536;45537;45538;45539;45540;45541;45542	45538					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8143310546875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.769	1	80.834	80.334	81.334	0.065094								0	0	0	0.21673	1	20997	20997		17.113	0.96379	1				37669	537	22070	22071	45543	45543					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8140869140625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.917	1	80.982	80.482	81.482	0.065094								0	0	0	0.20303	1	21043	21043		21.537	10.042	1				37670	537	22070	22071	45544	45544					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8141479492188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.097	1	81.162	80.662	81.662	0.065094								0	0	0	0.21673	1	21099	21099		17.113	3.2068	1				37671	537	22070	22071	45545	45545					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8135986328125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.522	1	89.613	89.113	90.113	0.090569								0	0	0	0.19932	1	23686	23686		22.736	7.898	1				37672	537	22070	22071	45546	45546					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.813720703125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.698	1	89.789	89.289	90.289	0.090569								0	0	0	0.21673	1	23740	23740		17.113	7.039	1				37673	537	22070	22071	45547	45547					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8135375976562	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.501	1	93.588	93.088	94.088	0.08667								0	0	0	0.22666	1	24904	24904		13.906	3.0821	1				37674	537	22070	22071	45548	45548					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8139038085938	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.77	1	101.8	101.3	102.3	0.027206								0	0	0	0.21673	1	27136	27136		17.113	7.039	1				37675	537	22070	22071	45549	45549					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.814208984375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.82	1	112.8	112.3	113.3	-0.017303								0	0	0	0.25197	1	29340	29340		5.7319	0	1				37676	537	22070	22071	45550	45550					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8145751953125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.85	1	112.83	112.33	113.33	-0.017303								0	0	0	0.24066	1	29346	29346		9.3831	3.6513	1				37677	537	22070	22071	45551	45551					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8140258789062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.97	1	112.95	112.45	113.45	-0.017303								0	0	0	0.21673	1	29373	29373		17.113	5.4726	1				37678	537	22070	22071	45552	45552					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.81494140625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.05	1	113.03	112.53	113.53	-0.017303								0	0	0	0.24446	1	29396	29396		8.1555	2.4237	1				37679	537	22070	22071	45553	45553					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8139038085938	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.18	1	113.16	112.66	113.66	-0.017303								0	0	0	0.25955	1	29422	29422		3.2813	0.28607	1				37680	537	22070	22071	45554	45554					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8145141601562	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.31	1	113.3	112.8	113.8	-0.017303								0	0	0	0.25197	1	29458	29458		5.7319	0	1				37681	537	22070	22071	45555	45555					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8136596679688	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.32	1	113.3	112.8	113.8	-0.017303								0	0	0	0.21673	1	29461	29461		17.113	7.039	1				37682	537	22070	22071	45556	45556					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8145751953125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.41	1	113.39	112.89	113.89	-0.017303								0	0	0	0.25197	1	29481	29481		5.7319	0	1				37683	537	22070	22071	45557	45557					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.814697265625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.47	1	113.45	112.95	113.95	-0.017303								0	0	0	0.2505	1	29495	29495		6.2058	2.2614	1				37684	537	22070	22071	45558	45558					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8133544921875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.51	1	113.5	113	114	-0.017303								0	0	0	0.25197	1	29505	29505		5.7319	0	1				37685	537	22070	22071	45559	45559					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8147583007812	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.59	1	113.57	113.07	114.07	-0.017303								0	0	0	0.23182	1	29523	29523		12.241	6.0349	1				37686	537	22070	22071	45560	45560					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8137817382812	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.72	1	113.71	113.21	114.21	-0.017303								0	0	0	0.24066	1	29554	29554		9.3831	3.6513	1				37687	537	22070	22071	45561	45561					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.81396484375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.81	1	113.8	113.3	114.3	-0.017303								0	0	0	0.23182	1	29573	29573		12.241	6.0349	1				37688	537	22070	22071	45562	45562					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.813232421875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.86	1	113.85	113.35	114.35	-0.018448								0	0	0	0.24446	1	29585	29585		8.1555	2.4237	1				37689	537	22070	22071	45563	45563					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.814453125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.93	1	113.91	113.41	114.41	-0.019096								0	0	0	0.25197	1	29599	29599		5.7319	0	1				37690	537	22070	22071	45564	45564					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.814453125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.04	1	114.02	113.52	114.52	-0.019096								0	0	0	0.23182	1	29628	29628		12.241	6.0349	1				37691	537	22070	22071	45565	45565					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8143920898438	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.11	1	114.09	113.59	114.59	-0.019096								0	0	0	0.25955	1	29643	29643		3.2813	0.28607	1				37692	537	22070	22071	45566	45566					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8150634765625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.44	1	114.42	113.92	114.92	-0.019096								0	0	0	0.25197	1	29714	29714		5.7319	0	1				37693	537	22070	22071	45567	45567					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8136596679688	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.51	1	114.49	113.99	114.99	-0.019096								0	0	0	0.24066	1	29731	29731		9.3831	3.6513	1				37694	537	22070	22071	45568	45568					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8137817382812	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.64	1	114.62	114.12	115.12	-0.019096								0	0	0	0.25955	1	29756	29756		3.2813	0.28607	1				37695	537	22070	22071	45569	45569					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8136596679688	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.75	1	114.73	114.23	115.23	-0.019096								0	0	0	0.25858	1	29780	29780		3.5965	0	1				37696	537	22070	22071	45570	45570					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8136596679688	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.78	1	114.77	114.27	115.27	-0.019096								0	0	0	0.25197	1	29788	29788		5.7319	0	1				37697	537	22070	22071	45571	45571					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.813232421875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.8	1	114.78	114.28	115.28	-0.019096								0	0	0	0.25858	1	29792	29792		3.5965	0	1				37698	537	22070	22071	45572	45572					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8143920898438	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.92	1	114.9	114.4	115.4	-0.019096								0	0	0	0.25331	1	29817	29817		5.2969	2.0156	1				37699	537	22070	22071	45573	45573					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.81396484375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.27	1	115.25	114.75	115.75	-0.020988								0	0	0	0.24446	1	29897	29897		8.1555	2.4237	1				37700	537	22070	22071	45574	45574					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8137817382812	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.3	1	115.28	114.78	115.78	-0.020988								0	0	0	0.25197	1	29904	29904		5.7319	0	1				37701	537	22070	22071	45575	45575					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8146362304688	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.38	1	115.36	114.86	115.86	-0.020988								0	0	0	0.25197	1	29923	29923		5.7319	0	1				37702	537	22070	22071	45576	45576					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.813720703125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.58	1	115.56	115.06	116.06	-0.020988								0	0	0	0.25197	1	29971	29971		5.7319	0	1				37703	537	22070	22071	45577	45577					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8150634765625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.6	1	115.58	115.08	116.08	-0.020988								0	0	0	0.24446	1	29975	29975		8.1555	2.4237	1				37704	537	22070	22071	45578	45578					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8137817382812	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.96	1	115.94	115.44	116.44	-0.020988								0	0	0	0.25197	1	30055	30055		5.7319	0	1				37705	537	22070	22071	45579	45579					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.814208984375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.33	1	116.31	115.81	116.81	-0.022781								0	0	0	0.25197	1	30138	30138		5.7319	0	1				37706	537	22070	22071	45580	45580					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.813720703125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.39	1	116.37	115.87	116.87	-0.022781								0	0	0	0.24446	1	30153	30153		8.1555	2.4237	1				37707	537	22070	22071	45581	45581					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8135986328125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.53	1	116.51	116.01	117.01	-0.022781								0	0	0	0.25197	1	30186	30186		5.7319	0	1				37708	537	22070	22071	45582	45582					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8139038085938	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.57	1	116.55	116.05	117.05	-0.022781								0	0	0	0.25955	1	30196	30196		3.2813	0.28607	1				37709	537	22070	22071	45583	45583					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.813720703125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.78	1	116.75	116.25	117.25	-0.022781								0	0	0	0.25955	1	30243	30243		3.2813	0.28607	1				37710	537	22070	22071	45584	45584					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8148193359375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.03	1	117	116.5	117.5	-0.022781								0	0	0	0.25197	1	30302	30302		5.7319	0	1				37711	537	22070	22071	45585	45585					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.813720703125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.23	1	117.2	116.7	117.7	-0.024147								0	0	0	0.25197	1	30350	30350		5.7319	0	1				37712	537	22070	22071	45586	45586					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8143310546875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.78	1	117.76	117.26	118.26	-0.024147								0	0	0	0.25197	1	30472	30472		5.7319	0	1				37713	537	22070	22071	45587	45587					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8145751953125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.11	1	118.08	117.58	118.58	-0.024147								0	0	0	0.25197	1	30546	30546		5.7319	0	1				37714	537	22070	22071	45588	45588					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8143310546875	2	528.813659	1055.61277	0.587	0.00031042	-0.51796	-0.0002739	0.069046	3.6513E-05	528.8143073961136	71.198	11.108	71.174	70.185	81.293	-0.024864					870	413	6	0	0	0	0.0008224	45	17963	17871;17915;17963;18008;18056;18097;18148;18192;18236;18283;18326;18367;18411;18464;18516;18566;18614;18662;18711;18760;18817;18864;18932;18975;19228;19281;19357;19476;19937;20050;20106;20159;20209;20261;20268;20309;20366;20411;20453;20506;20550;20659;20897;21041;21093		125.04	77.289	1	170250000			37715	537	22070	22071	45589;45590;45591;45592;45593;45594;45595;45596;45597;45598;45599;45600;45601;45602;45603;45604;45605;45606;45607;45608;45609;45610;45611;45612;45613;45614;45615;45616;45617;45618;45619;45620;45621;45622;45623;45624;45625;45626;45627;45628;45629;45630;45631;45632;45633	45591					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.814453125	2	528.813659	1055.61277	0.567	0.00029984	-0.26922	-0.00014236	0.29778	0.00015747	528.8135483541471	82.076	1.6157	82.052	81.564	83.179	-0.02404					92	64	2	0	0	0	0.19083	2	21544	21298;21544		24.991	14.917	1	270040			37716	537	22070	22071	45634;45635	45635					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8136596679688	2	528.813659	1055.61277	0.4392	0.00023225	-0.060363	-3.1921E-05	0.37883	0.00020033	528.8136709466366	99.411	0.52908	99.404	99.2	99.729	-0.006897					128	66	2	0	0	0	0.30459	1	26655	26655		8.1555	2.4237	1	128650			37717	537	22070	22071	45636	45636					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8128662109375	2	528.813659	1055.61277	0.43907	0.00023219	-0.29571	-0.00015638	0.14336	7.581E-05	528.8134531590816	100.04	0.36208	100.03	99.785	100.15	-0.0069046					76	49	2	0	0	0	0.30459	1	26785	26785		8.1555	4.2111	1	140180			37718	537	22070	22071	45637	45637					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.813232421875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.329	1	91.329	90.829	91.829	0.00046539								0	0	0	0.24446	1	24237	24237		8.1555	2.4237	1				37719	537	22070	22071	45638	45638					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8134155273438	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.371	1	91.371	90.871	91.871	0.00046539								0	0	0	0.23182	1	24250	24250		12.241	6.0349	1				37720	537	22070	22071	45639	45639					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.813720703125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.484	1	91.484	90.984	91.984	0.00046539								0	0	0	0.21673	1	24285	24285		17.113	7.039	1				37721	537	22070	22071	45640	45640					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8135986328125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.623	1	91.623	91.123	92.123	0.00046539								0	0	0	0.19932	1	24328	24328		22.736	7.898	1				37722	537	22070	22071	45641	45641					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8134155273438	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.636	1	91.636	91.136	92.136	0.00046539								0	0	0	0.23182	1	24332	24332		12.241	6.0349	1				37723	537	22070	22071	45642	45642					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8136596679688	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.688	1	91.688	91.188	92.188	0.00046539								0	0	0	0.21673	1	24348	24348		17.113	7.039	1				37724	537	22070	22071	45643	45643					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8131713867188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.535	1	97.529	97.029	98.029	-0.0068283								0	0	0	0.23182	1	26115	26115		12.241	4.0851	1				37725	537	22070	22071	45644	45644					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8135986328125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.87	1	111.89	111.39	112.39	0.0131								0	0	0	0.24773	1	29123	29123		7.1017	0.37856	1				37726	537	22070	22071	45645	45645					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.814208984375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.05	1	112.07	111.57	112.57	0.0131								0	0	0	0.23628	1	29172	29172		10.8	3.6978	1				37727	537	22070	22071	45646	45646					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.81396484375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.09	1	112.1	111.6	112.6	0.0131								0	0	0	0.24066	1	29180	29180		9.3831	1.2276	1				37728	537	22070	22071	45647	45647					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8140258789062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.35	1	112.37	111.87	112.87	0.0131								0	0	0	0.25197	1	29243	29243		5.7319	0	1				37729	537	22070	22071	45648	45648					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8136596679688	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.38	1	112.39	111.89	112.89	0.0131								0	0	0	0.25197	1	29250	29250		5.7319	0	1				37730	537	22070	22071	45649	45649					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8133544921875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.58	1	112.59	112.09	113.09	0.0131								0	0	0	0.25197	1	29296	29296		5.7319	0	1				37731	537	22070	22071	45650	45650					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8140869140625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.73	1	112.74	112.24	113.24	0.0131								0	0	0	0.25197	1	29331	29331		5.7319	0	1				37732	537	22070	22071	45651	45651					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8155517578125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.85	1	112.86	112.36	113.36	0.014824								0	0	0	0.25197	1	29362	29362		5.7319	0	1				37733	537	22070	22071	45652	45652					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8138427734375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.87	1	112.89	112.39	113.39	0.014824								0	0	0	0.24446	1	29368	29368		8.1555	2.4237	1				37734	537	22070	22071	45653	45653					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8151245117188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.91	1	112.92	112.42	113.42	0.014824								0	0	0	0.23182	1	29378	29378		12.241	6.0349	1				37735	537	22070	22071	45654	45654					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8139038085938	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.99	1	113.01	112.51	113.51	0.014824								0	0	0	0.25197	1	29402	29402		5.7319	0	1				37736	537	22070	22071	45655	45655					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8140258789062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.13	1	113.15	112.65	113.65	0.014824								0	0	0	0.21673	1	29437	29437		17.113	4.8722	1				37737	537	22070	22071	45656	45656					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8141479492188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.17	1	113.18	112.68	113.68	0.014824								0	0	0	0.25197	1	29446	29446		5.7319	0	1				37738	537	22070	22071	45657	45657					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8143310546875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.19	1	113.2	112.7	113.7	0.014824								0	0	0	0.24446	1	29450	29450		8.1555	2.4237	1				37739	537	22070	22071	45658	45658					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8138427734375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.25	1	113.27	112.77	113.77	0.014824								0	0	0	0.25197	1	29467	29467		5.7319	0	1				37740	537	22070	22071	45659	45659					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8141479492188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.33	1	113.35	112.85	113.85	0.014824								0	0	0	0.25197	1	29489	29489		5.7319	0	1				37741	537	22070	22071	45660	45660					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.814697265625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.54	1	113.55	113.05	114.05	0.014824								0	0	0	0.25197	1	29537	29537		5.7319	0	1				37742	537	22070	22071	45661	45661					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.81396484375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.66	1	113.67	113.17	114.17	0.014824								0	0	0	0.25858	1	29570	29570		3.5965	0	1				37743	537	22070	22071	45662	45662					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8143920898438	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.77	1	113.78	113.28	114.28	0.014824								0	0	0	0.25197	1	29595	29595		5.7319	0	1				37744	537	22070	22071	45663	45663					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8145141601562	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.85	1	113.86	113.36	114.36	0.016708								0	0	0	0.21673	1	29615	29615		17.113	7.039	1				37745	537	22070	22071	45664	45664					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8143310546875	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.92	1	113.94	113.44	114.44	0.016708								0	0	0	0.22933	1	29636	29636		13.042	4.8869	1				37746	537	22070	22071	45665	45665					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8140258789062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.19	1	114.21	113.71	114.71	0.016708								0	0	0	0.24446	1	29702	29702		8.1555	2.4237	1				37747	537	22070	22071	45666	45666					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8135375976562	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.34	1	114.36	113.86	114.86	0.016708								0	0	0	0.24446	1	29736	29736		8.1555	2.4237	1				37748	537	22070	22071	45667	45667					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.814208984375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.46	1	114.48	113.98	114.98	0.016708								0	0	0	0.25197	1	29766	29766		5.7319	0	1				37749	537	22070	22071	45668	45668					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.813720703125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.48	1	114.5	114	115	0.016708								0	0	0	0.25197	1	29771	29771		5.7319	0	1				37750	537	22070	22071	45669	45669					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8155517578125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.62	1	114.64	114.14	115.14	0.016708								0	0	0	0.25197	1	29803	29803		5.7319	0	1				37751	537	22070	22071	45670	45670					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.814453125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.66	1	114.68	114.18	115.18	0.016708								0	0	0	0.25955	1	29814	29814		3.2813	0.28607	1				37752	537	22070	22071	45671	45671					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8143920898438	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115	1	115.02	114.52	115.52	0.018738								0	0	0	0.25197	1	29893	29893		5.7319	0	1				37753	537	22070	22071	45672	45672					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8145751953125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.23	1	115.25	114.75	115.75	0.018738								0	0	0	0.25955	1	29939	29939		3.2813	0.28607	1				37754	537	22070	22071	45673	45673					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8142700195312	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.24	1	115.26	114.76	115.76	0.018738								0	0	0	0.25955	1	29942	29942		3.2813	0.28607	1				37755	537	22070	22071	45674	45674					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8142700195312	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.34	1	115.35	114.85	115.85	0.018738								0	0	0	0.25197	1	29963	29963		5.7319	0	1				37756	537	22070	22071	45675	45675					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.81396484375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.38	1	115.4	114.9	115.9	0.018738								0	0	0	0.25197	1	29971	29971		5.7319	0	1				37757	537	22070	22071	45676	45676					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8146362304688	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.44	1	115.46	114.96	115.96	0.018738								0	0	0	0.25197	1	29984	29984		5.7319	0	1				37758	537	22070	22071	45677	45677					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.81396484375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.5	1	115.51	115.01	116.01	0.018738								0	0	0	0.24446	1	29994	29994		8.1555	2.4237	1				37759	537	22070	22071	45678	45678					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8138427734375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.65	1	115.67	115.17	116.17	0.018738								0	0	0	0.25197	1	30033	30033		5.7319	0	1				37760	537	22070	22071	45679	45679					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.814208984375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.04	1	116.07	115.57	116.57	0.020988								0	0	0	0.25331	1	30119	30119		5.2969	2.0156	1				37761	537	22070	22071	45680	45680					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8140869140625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.31	1	116.33	115.83	116.83	0.020988								0	0	0	0.25197	1	30183	30183		5.7319	0	1				37762	537	22070	22071	45681	45681					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8145141601562	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.39	1	116.41	115.91	116.91	0.020988								0	0	0	0.25197	1	30201	30201		5.7319	0	1				37763	537	22070	22071	45682	45682					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8141479492188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.53	1	116.56	116.06	117.06	0.020988								0	0	0	0.25955	1	30236	30236		3.2813	0.28607	1				37764	537	22070	22071	45683	45683					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8142700195312	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.55	1	116.57	116.07	117.07	0.020988								0	0	0	0.25331	1	30239	30239		5.2969	2.0156	1				37765	537	22070	22071	45684	45684					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8154907226562	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.77	1	116.8	116.3	117.3	0.020988								0	0	0	0.25197	1	30290	30290		5.7319	0	1				37766	537	22070	22071	45685	45685					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.81494140625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.97	1	116.99	116.49	117.49	0.020988								0	0	0	0.24446	1	30335	30335		8.1555	2.4237	1				37767	537	22070	22071	45686	45686					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8141479492188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.09	1	117.11	116.61	117.61	0.020988								0	0	0	0.25197	1	30364	30364		5.7319	0	1				37768	537	22070	22071	45687	45687					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.81396484375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.16	1	117.18	116.68	117.68	0.023476								0	0	0	0.25197	1	30380	30380		5.7319	0	1				37769	537	22070	22071	45688	45688					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8145751953125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.21	1	117.23	116.73	117.73	0.023476								0	0	0	0.24066	1	30390	30390		9.3831	1.2276	1				37770	537	22070	22071	45689	45689					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.814453125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.24	1	117.26	116.76	117.76	0.023476								0	0	0	0.25197	1	30397	30397		5.7319	0	1				37771	537	22070	22071	45690	45690					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8143920898438	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.39	1	117.41	116.91	117.91	0.023476								0	0	0	0.25955	1	30429	30429		3.2813	0.28607	1				37772	537	22070	22071	45691	45691					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8134765625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.54	1	117.56	117.06	118.06	0.023476								0	0	0	0.25955	1	30462	30462		3.2813	0.28607	1				37773	537	22070	22071	45692	45692					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8142700195312	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.66	1	117.68	117.18	118.18	0.023476								0	0	0	0.25197	1	30490	30490		5.7319	0	1				37774	537	22070	22071	45693	45693					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8138427734375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.71	1	117.74	117.24	118.24	0.023476								0	0	0	0.25955	1	30504	30504		3.2813	0.28607	1				37775	537	22070	22071	45694	45694					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8140869140625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.87	1	117.9	117.4	118.4	0.023476								0	0	0	0.25197	1	30541	30541		5.7319	0	1				37776	537	22070	22071	45695	45695					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.814453125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.32	1	118.34	117.84	118.84	0.026253								0	0	0	0.25197	1	30641	30641		5.7319	0	1				37777	537	22070	22071	45696	45696					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8137817382812	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.36	1	118.39	117.89	118.89	0.026253								0	0	0	0.25858	1	30651	30651		3.5965	0	1				37778	537	22070	22071	45697	45697					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.81396484375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.39	1	118.42	117.92	118.92	0.026253								0	0	0	0.25955	1	30658	30658		3.2813	0.28607	1				37779	537	22070	22071	45698	45698					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8140258789062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.53	1	118.56	118.06	119.06	0.026253								0	0	0	0.25197	1	30692	30692		5.7319	0	1				37780	537	22070	22071	45699	45699					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.814208984375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.75	1	118.78	118.28	119.28	0.026253								0	0	0	0.25197	1	30741	30741		5.7319	0	1				37781	537	22070	22071	45700	45700					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8140869140625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.77	1	118.8	118.3	119.3	0.026253								0	0	0	0.24446	1	30745	30745		8.1555	2.4237	1				37782	537	22070	22071	45701	45701					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8138427734375	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.28	1	119.31	118.81	119.81	0.026573								0	0	0	0.25955	1	30857	30857		3.2813	0.28607	1				37783	537	22070	22071	45702	45702					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8142700195312	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.7	1	119.72	119.22	120.22	0.027756								0	0	0	0.25955	1	30948	30948		3.2813	0.28607	1				37784	537	22070	22071	45703	45703					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.814453125	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.97	1	119.99	119.49	120.49	0.027756								0	0	0	0.25197	1	31011	31011		5.7319	0	1				37785	537	22070	22071	45704	45704					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3001708984375	2	528.813659	1055.61277	0.48321	0.00025553	-0.55832	-0.00029525	-0.075112	-3.972E-05	528.8136546493477	97.883	0.50253	97.876	97.545	98.047	-0.0068283					63	43	2	0	0	0	0.25123	1	26160	26160		12.241	6.0349	1	151540			37786	537	22070	22071	45705	45705					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2932739257812	2	528.813659	1055.61277	0.44624	0.00023598	-0.057395	-3.0351E-05	0.38885	0.00020563	528.8137432145782	99.082	0.46468	99.075	98.743	99.207	-0.006897					94	59	2	0	0	0	0.23235	1	26573	26573		21.537	11.463	1	105180			37787	537	22070	22071	45706	45706					0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	528.813659	1055.61277	0.12267	6.4872E-05	0.2069	0.00010941	0.32957	0.00017428	528.8137987533756	98.705	0.73875	98.705	98.334	99.073	0	-0.22026	0.00015513	NaN	21.537	140	85	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95092			37788	537	22070	22071							0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	528.813659	1055.61277	0.24915	0.00013176	-0.32098	-0.00016974	-0.071832	-3.7986E-05	528.813677391528	97.532	0.4528	97.601	97.365	97.818	0.069748	-0.14138	4.6729E-05	NaN	17.113	67	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116500			37789	537	22070	22071							0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	528.813659	1055.61277	0.20635	0.00010912	-0.11109	-5.8745E-05	0.095261	5.0375E-05	528.8138403901079	98.944	0.27406	98.995	98.846	99.12	0.050888	0.070013	-0.00018118	NaN	21.537	58	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97765			37790	537	22070	22071							0.08718326093890028
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.813659	1055.61277	0.43912	0.00023221	0.081765	4.3238E-05	0.52089	0.00027545	528.8136021405543	111.55	0.18452	111.56	111.48	111.66	0.01152	-0.17603	-6.658E-05	NaN	9.3831	34	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98399			37791	537	22070	22071							0.08718326093890028
RITDEFIEK	9	Unmodified	_RITDEFIEK_					0	0	0		ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.31103515625	2	575.808771	1149.60299	0.27669	0.00015932	0.8155	0.00046957	1.0922	0.00062889	576.3110890430116	35.433	0.55361	35.509	35.288	35.842	0.075306					43	19	3	0	0	0	0.22755	1	7105	7105		19.626	1.2529	1	407490			37792	8698	22071	22072	45707	45707					0.034170932978668134
RITSQAKQL	9	Unmodified	_RITSQAKQL_					0	0	0			REV__ENST00000600802.1_1_19:7923082-7923299:+|nuORF	REV__ENST00000600802.1_1_19:7923082-7923299:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.811767578125	2	522.811648	1043.60874	0.65834	0.00034419	0.60079	0.0003141	1.2591	0.00065828	522.8114964029954	86.243	1.2347	86.243	85.791	87.025	0					144	47	4	0	0	0	0.2719	1	22648	22648		13.042	2.9685	1	1924700	+		37793	16118	22072	22073	45708	45708					0.08868236600187629
RITSQAKQL	9	Unmodified	_RITSQAKQL_					0	0	0			REV__ENST00000600802.1_1_19:7923082-7923299:+|nuORF	REV__ENST00000600802.1_1_19:7923082-7923299:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.811767578125	2	522.811648	1043.60874	0.52243	0.00027313	0.34055	0.00017805	0.86298	0.00045118	522.8116124860893	86.147	1.1727	86.231	85.863	87.036	0.084251					107	46	4	0	0	0	0.2719	1	22691	22691		13.042	0.80181	1	2057500	+		37794	16118	22072	22073	45709	45709					0.08868236600187629
RITSQAKQL	9	Unmodified	_RITSQAKQL_					0	0	0			REV__ENST00000600802.1_1_19:7923082-7923299:+|nuORF	REV__ENST00000600802.1_1_19:7923082-7923299:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8119506835938	2	522.811648	1043.60874	0.61325	0.00032061	0.13107	6.8525E-05	0.74432	0.00038914	522.8115432472217	86.166	1.1709	86.157	85.791	86.962	-0.0090027					113	45	4	0	0	0	0.23767	2	22646	22646;22695		18.146	3.3081	1	1821100	+		37795	16118	22072	22073	45710;45711	45710					0.08868236600187629
RIVENLKVLRF	11	Unmodified	_RIVENLKVLRF_					0	0	0			REV__nc|ENSG00000158467|Q96HN2-4|AHCYL2	REV__nc|ENSG00000158467|Q96HN2-4|AHCYL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.30072021484375	3	462.957511	1385.8507	0.14771	6.8385E-05	0.37233	0.00017237	0.52005	0.00024076	462.9576121844841	43.484	0.28469	43.561	43.425	43.71	0.077515					13	9	2	0	0	0	0.46554	1	9577	9577		2.6312	0.37851	1	201440	+		37796	16811	22073	22074	45712	45712					0.17321266956309955
RIVSRYGVE	9	Unmodified	_RIVSRYGVE_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3;ENST00000548067.1_1_12:101011523-101012389:+|nuORF	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8058471679688	2	539.803823	1077.59309	0.50565	0.00027295	2.185	0.0011795	2.6906	0.0014524	539.8050686293033	71.098	0.63414	71.098	70.768	71.402	0					52	22	3	0	0	0	0.11461	1	18095	18095		36.127	0	1	947190			37797	4231	22074	22075	45713	45713					0.057399500831252226
RIVVEIVKYF	10	Unmodified	_RIVVEIVKYF_					0	0	0			REV__nc|ENSG00000080839|P28749-2|RBL1	REV__nc|ENSG00000080839|P28749-2|RBL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3687133789062	2	633.384448	1264.75434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.97	1	104.97	104.47	105.47	0								0	0	0	0.38166	1	27838	27838		1.4819	0.28856	1		+		37798	13896	22075	22076	45714	45714					0.13255699396381715
RIYGKFLGL	9	Unmodified	_RIYGKFLGL_					0	0	0		nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E;ENST00000556218.5_1_14:102349680-102375988:+|nuORF;nc|ENSG00000066027|Q15172-2|PPP2R5A;ENSG00000066027|ENST00000261461|PPP2R5A;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C	nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000078304|Q13362-2|PPP2R5C	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.82421875	2	533.824027	1065.6335	0.88379	0.00047179	-0.49505	-0.00026427	0.38874	0.00020752	533.8236347445986	50.799	0.88813	50.799	50.518	51.406	0					81	32	4	0	0	0	0.051692	1	11855	11855		52.268	23.187	1	1793500			37799	2447;1109	22076	22077	45715	45715					0.10330916473549223
RIYGKFLGL	9	Unmodified	_RIYGKFLGL_					0	0	0		nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E;ENST00000556218.5_1_14:102349680-102375988:+|nuORF;nc|ENSG00000066027|Q15172-2|PPP2R5A;ENSG00000066027|ENST00000261461|PPP2R5A;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C	nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000078304|Q13362-2|PPP2R5C	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.8241577148438	2	533.824027	1065.6335	0.7765	0.00041451	-0.28716	-0.0001533	0.48933	0.00026122	533.8237479436309	50.925	0.91222	50.934	50.621	51.533	0.0095634					77	34	3	0	0	0	0.034444	1	11862	11862		58.679	28.042	1	1770100			37800	2447;1109	22076	22077	45716	45716					0.10330916473549223
RIYGKFLGL	9	Unmodified	_RIYGKFLGL_					0	0	0		nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E;ENST00000556218.5_1_14:102349680-102375988:+|nuORF;nc|ENSG00000066027|Q15172-2|PPP2R5A;ENSG00000066027|ENST00000261461|PPP2R5A;nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C	nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000078304|Q13362-2|PPP2R5C	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	533.824027	1065.6335	0.64014	0.00034172	-0.2788	-0.00014883	0.36135	0.00019289	533.8237589030055	50.775	0.90189	50.822	50.577	51.479	0.046574	-0.02966	8.9341E-05	NaN	58.679	85	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1753900			37801	2447;1109	22076	22077							0.10330916473549223
RIYKDKWA	8	Unmodified	_RIYKDKWA_					0	0	0			REV__ENSG00000103066|ENST00000219345|PLA2G15	REV__ENSG00000103066|ENST00000219345|PLA2G15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7799682617188	2	540.303458	1078.59236	0.27209	0.00014701	0.29908	0.0001616	0.57117	0.0003086	540.3035236605765	17.545	0.66873	17.428	17.289	17.957	-0.11739					35	22	2	0	0	0	0.34378	1	1662	1662		3.9444	0	1	57329	+		37802	14353	22077	22078	45717	45717					0.05621155434073444
RIYSYVVSR	9	Unmodified	_RIYSYVVSR_					0	0	0		ENST00000429974.1_1_10:93526536-93526818:-|nuORF;ENSG00000113194|ENST00000261942|FAF2	ENST00000429974.1_1_10:93526536-93526818:-|nuORF	ENST00000429974.1_1_10:93526536-93526818:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.8193359375	2	571.819473	1141.62439	0.46795	0.00026758	-0.79875	-0.00045674	-0.3308	-0.00018916	571.819169245548	32.207	0.56908	32.207	32.064	32.633	0					47	20	3	0	0	0	0.0099976	1	6125	6125		79.427	79.427	1	380440			37803	2478	22078	22079	45718	45718					0.059245231172326385
RIYSYVVSR	9	Unmodified	_RIYSYVVSR_					0	0	0		ENST00000429974.1_1_10:93526536-93526818:-|nuORF;ENSG00000113194|ENST00000261942|FAF2	ENST00000429974.1_1_10:93526536-93526818:-|nuORF	ENST00000429974.1_1_10:93526536-93526818:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.819580078125	2	571.819473	1141.62439	0.67196	0.00038424	-1.0068	-0.0005757	-0.33484	-0.00019147	571.8192598036075	32.117	0.5806	32.159	31.968	32.549	0.042366					40	20	3	0	0	0	0.038291	1	6110	6110		57.249	29.62	1	403940			37804	2478	22078	22079	45719	45719					0.059245231172326385
RIYSYVVSR	9	Unmodified	_RIYSYVVSR_					0	0	0		ENST00000429974.1_1_10:93526536-93526818:-|nuORF;ENSG00000113194|ENST00000261942|FAF2	ENST00000429974.1_1_10:93526536-93526818:-|nuORF	ENST00000429974.1_1_10:93526536-93526818:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.8196411132812	2	571.819473	1141.62439	0.28144	0.00016093	-0.49945	-0.00028559	-0.21801	-0.00012466	571.8193510723194	32.204	0.66374	32.256	31.991	32.655	0.052078					52	23	3	0	0	0	0.048871	1	6109	6109		53.317	38.068	1	249280			37805	2478	22078	22079	45720	45720					0.059245231172326385
RIYYNVWLE	9	Unmodified	_RIYYNVWLE_					0	0	0			REV__nc|ENSG00000171100|Q13496-2|MTM1	REV__nc|ENSG00000171100|Q13496-2|MTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	628.327392578125	2	628.327131	1254.63971	-0.16047	-0.00010083	0.42493	0.00026699	0.26446	0.00016616	628.3280174783	12.16	0.085725	12.064	12.037	12.122	-0.096607					5	3	2	0	0	0	0.35563	1	57	57		0.52476	0	1	13678	+		37806	17619	22079	22080	45721	45721					0.022573899144390452
RKAERDELA	9	Unmodified	_RKAERDELA_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7843017578125	2	544.296362	1086.57817	0.76122	0.00041433	-0.23044	-0.00012543	0.53078	0.0002889	544.2965998249234	54.402	0.35509	54.402	54.296	54.651	0					12	12	2	0	0	0	0.24289	1	12981	12981		13.042	0	1	164490			37807	3470	22080	22081	45722	45722					0.038344582151466966
RKAERDELA	9	Unmodified	_RKAERDELA_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	544.296362	1086.57817	0.84325	0.00045898	0.29327	0.00015963	1.1365	0.0006186	544.2967133082684	54.604	0.37154	54.588	54.31	54.681	-0.015923	0.092893	0.00017244	NaN	13.042	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147650			37808	3470	22080	22081							0.038344582151466966
RKAKAINEQRK	11	Unmodified	_RKAKAINEQRK_					0	0	0			REV__ENSG00000188725|ENST00000339020|SMIM15	REV__ENSG00000188725|ENST00000339020|SMIM15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.2579040527344	3	447.940632	1340.80007	0.46157	0.00020676	-0.85972	-0.0003851	-0.39814	-0.00017834	447.94007915471474	44.56	0.19087	44.56	44.493	44.684	0					8	6	2	0	0	0	0.3322	1	9882	9882		2.6312	0	1	108160	+		37809	18566	22081	22082	45723	45723					0.1432973763130576
RKANLSRH	8	Unmodified	_RKANLSRH_					0	0	0		ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2886047363281	2	491.288674	980.562795	-0.10771	-5.2917E-05	-0.30548	-0.00015008	-0.41319	-0.00020299	491.2884781139834	12.311	0.36592	12.243	12.068	12.434	-0.06806					19	13	2	0	0	0	0.46491	1	102	102		0.69038	0	1	43597			37810	8365	22082	22083	45724	45724					0.07173636208597145
RKANLSRH	8	Unmodified	_RKANLSRH_					0	0	0		ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	491.288674	980.562795	-0.012495	-6.1385E-06	-0.18893	-9.2817E-05	-0.20142	-9.8956E-05	491.2885242644079	12.29	0.22654	12.29	12.171	12.397	0	0.023703	6.4769E-05	NaN	0.69038	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40340			37811	8365	22082	22083							0.07173636208597145
RKANLSRH	8	Unmodified	_RKANLSRH_					0	0	0		ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.288674	980.562795	-0.10771	-5.2917E-05	-0.30548	-0.00015008	-0.41319	-0.00020299	491.2884781139834	12.311	0.36592	12.243	12.068	12.434	-0.06806	-0.023703	-4.975E-05	NaN	0.69038	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43597			37812	8365	22082	22083							0.07173636208597145
RKCLHAPLF	9	Unmodified	_RKCLHAPLF_					0	0	0			REV__nc|ENSG00000227942|Q9BZ68|FRMD8P1	REV__nc|ENSG00000227942|Q9BZ68|FRMD8P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8080444335938	2	542.807854	1083.60115	0.37711	0.0002047	-0.024112	-1.3088E-05	0.353	0.00019161	542.8074841441646	76.352	0.9566	76.405	76.161	77.118	0.053413					68	33	3	0	0	0	0.32415	1	19791	19791		5.2307	0	1	335750	+		37813	15308	22083	22084	45725	45725					0.06269805798888228
RKCLHAPLF	9	Unmodified	_RKCLHAPLF_					0	0	0			REV__nc|ENSG00000227942|Q9BZ68|FRMD8P1	REV__nc|ENSG00000227942|Q9BZ68|FRMD8P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8079833984375	2	542.807854	1083.60115	0.6925	0.00037589	-0.1848	-0.00010031	0.5077	0.00027558	542.8074746075	76.527	1.1572	76.495	75.803	76.96	-0.031487					78	42	3	0	0	0	0.32415	1	19600	19600		5.2307	0	1	439240	+		37814	15308	22083	22084	45726	45726					0.06269805798888228
RKCLVKGKM	9	Unmodified	_RKCLVKGKM_					0	0	0		ENSG00000156738|ENST00000345732|MS4A1	ENSG00000156738|ENST00000345732|MS4A1	ENSG00000156738|ENST00000345732|MS4A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8167114257812	2	531.817364	1061.62018	0.41677	0.00022165	-0.80988	-0.00043071	-0.3931	-0.00020906	531.8166321577493	82.267	1.479	82.336	82.211	83.69	0.068993					76	57	2	0	0	0	0.33018	1	21464	21464		4.3292	0	1	231230			37815	5254	22084	22085	45727	45727					0.09183019098304612
RKCRVQVAY	9	Unmodified	_RKCRVQVAY_					0	0	0			REV__nc|ENSG00000116678|P48357-3|LEPR	REV__nc|ENSG00000116678|P48357-3|LEPR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.8135375976562	2	561.813667	1121.61278	0.47555	0.00026717	-1.1922	-0.0006698	-0.71666	-0.00040263	561.8132061262478	85.255	0.53828	85.242	85.017	85.555	-0.01284					42	20	3	0	0	0	0.23783	1	22377	22377		12.532	0	1	263750	+		37816	22964	22085	22086	45728	45728					0.056840028222495675
RKDGSTLTLQT	11	Unmodified	_RKDGSTLTLQT_					0	0	0		nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.3560180664062	2	610.335684	1218.65681	0.41689	0.00025444	0.27382	0.00016712	0.69071	0.00042156	610.8373355307291	89.635	1.2212	89.635	89.253	90.474	0					207	91	3	0	0	0	0.45422	1	23980	23980		4.897	1.6157	1	302630			37817	1792	22086	22087	45729	45729					0.056232657295595345
RKDGSTLTLQT	11	Unmodified	_RKDGSTLTLQT_					0	0	0		nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	610.335684	1218.65681	0.40805	0.00024905	0.34673	0.00021162	0.75477	0.00046066	610.8374073963112	89.532	1.4044	89.622	89.022	90.427	0.090561	-0.0085723	1.1267E-05	NaN	4.897	237	95	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405110			37818	1792	22086	22087							0.056232657295595345
RKDGSTLTLQT	11	Unmodified	_RKDGSTLTLQT_					0	0	0		nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	610.335684	1218.65681	0.38486	0.00023489	0.41792	0.00025507	0.80278	0.00048997	610.8374317523272	89.636	1.3479	89.635	89.16	90.508	-0.00081635	0.0043007	9.8175E-05	NaN	4.897	208	100	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422050			37819	1792	22086	22087							0.056232657295595345
RKDLLQQSTYI	11	Unmodified	_RKDLLQQSTYI_					0	0	0		ENST00000481421.1_1_3:156431675-156432128:-|nuORF	ENST00000481421.1_1_3:156431675-156432128:-|nuORF	ENST00000481421.1_1_3:156431675-156432128:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.5880432128906	3	455.589265	1363.74596	-0.081396	-3.7083E-05	-2.4799	-0.0011298	-2.5613	-0.0011669	455.58815994010797	46.041	0.71455	46.1	45.819	46.534	0.059834					36	25	2	0	0	0	0.42863	1	10345	10345		7.4771	3.6007	1	824730			37820	11029	22087	22088	45730	45730					0.07864100689107545
RKDLLQQSTYI	11	Unmodified	_RKDLLQQSTYI_					0	0	0		ENST00000481421.1_1_3:156431675-156432128:-|nuORF	ENST00000481421.1_1_3:156431675-156432128:-|nuORF	ENST00000481421.1_1_3:156431675-156432128:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.5878601074219	3	455.589265	1363.74596	0.18056	8.2259E-05	-2.8954	-0.0013191	-2.7148	-0.0012368	455.587972031546	46.031	0.93752	46.096	45.782	46.719	0.065048					48	33	2	0	0	0	0.42863	1	10344	10344		7.4771	4.8458	1	792170			37821	11029	22087	22088	45731	45731					0.07864100689107545
RKEDPTIT	8	Unmodified	_RKEDPTIT_					0	0	0			REV__ENST00000462386.5_1_2:209112975-209118617:-|nuORF	REV__ENST00000462386.5_1_2:209112975-209118617:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.26123046875	2	480.261456	958.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.445	1	26.407	25.907	26.907	-0.038671								0	0	0	0.35843	1	4358	4358		10.824	1.4408	1		+		37822	21231	22088	22089	45732	45732					0.027445795465155243
RKEDTEML	8	Unmodified	_RKEDTEML_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENSG00000069956|ENST00000261845|MAPK6;ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENSG00000069956|ENST00000261845|MAPK6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.25286865234375	2	511.252774	1020.491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.639	1	99.639	99.139	100.14	0								0	0	0	0.37183	1	26650	26650		4.756	0	1				37823	913;10363	22089	22090	45733	45733					-0.018430840507903667
RKEDTEML	8	Unmodified	_RKEDTEML_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENSG00000069956|ENST00000261845|MAPK6;ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENSG00000069956|ENST00000261845|MAPK6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.25250244140625	2	511.252774	1020.491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.498	1	91.589	91.089	92.089	0.090668								0	0	0	0.37183	1	24289	24289		4.756	0.42677	1				37824	913;10363	22089	22090	45734	45734					-0.018430840507903667
RKEDTEML	8	Unmodified	_RKEDTEML_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENSG00000069956|ENST00000261845|MAPK6;ENST00000420752.1_1_10:50980319-50981214:+|nuORF	ENSG00000069956|ENST00000261845|MAPK6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2528991699219	2	511.252774	1020.491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.275	1	99.326	98.826	99.826	0.050888								0	0	0	0.37183	1	26564	26564		4.756	0.42677	1				37825	913;10363	22089	22090	45735	45735					-0.018430840507903667
RKEEEDLS	8	Unmodified	_RKEEEDLS_					0	0	0			REV__ENSG00000163637|ENST00000638394|PRICKLE2	REV__ENSG00000163637|ENST00000638394|PRICKLE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7940368652344	2	503.246003	1004.47745	0.19513	9.82E-05	1.4574	0.00073345	1.6526	0.00083165	503.2467218545595	19.153	1.2798	19.037	18.532	19.812	-0.11635					53	44	2	0	0	0	0.34353	1	2042	2042		4.756	0	1	41412	+		37826	17074	22090	22091	45736	45736					-0.024606185583706974
RKEPRKQLKD	10	Unmodified	_RKEPRKQLKD_					0	0	0			REV__nc|ENSG00000064787|O75363|BCAS1	REV__nc|ENSG00000064787|O75363|BCAS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.3890380859375	2	649.388585	1296.76262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.962	1	93.052	92.552	93.552	0.089195								0	0	0	0.38166	1	24742	24742		1.4819	0	1		+		37827	13650	22091	22092	45737	45737					0.12610646365692446
RKERERRNQET	11	Unmodified	_RKERERRNQET_					0	0	0		ENSG00000144218|ENST00000672756|AFF3;nc|ENSG00000144218|P51826-2|AFF3;AFF3|p.K283Sfs*23|1|0.44|ENSG00000144218|chr2:100006657-100006657|T/-|frameshift_variant;AFF3|p.N473Tfs*11|1|0.27|ENSG00000144218|chr2:99594243-99594243|T/-|frameshift_variant	ENSG00000144218|ENST00000672756|AFF3	ENSG00000144218|ENST00000672756|AFF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.3092346191406	3	501.269588	1500.78693	-0.080652	-4.0428E-05	1.1576	0.00058028	1.077	0.00053985	501.2697817458048	12.949	0.34436	12.881	12.702	13.047	-0.067496					21	11	3	0	0	0	0.33348	1	266	266		0.40827	0	1	36488			37828	4570	22092	22093	45738	45738					0.05657254781294796
RKERETIGPGK	11	Unmodified	_RKERETIGPGK_					0	0	0			REV__ENSG00000073150|ENST00000395842|PANX2	REV__ENSG00000073150|ENST00000395842|PANX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.25537109375	3	424.245721	1269.71533	-0.14331	-6.0799E-05	0.27118	0.00011505	0.12787	5.4247E-05	424.2457876924303	27.27	0.48507	27.258	27.042	27.527	-0.011562					37	16	3	0	0	0	0.36257	1	4648	4648		9.2438	0	1	204880	+		37829	13773	22093	22094	45739	45739					0.09126367094700072
RKESNVVEAV	10	Unmodified	_RKESNVVEAV_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.8143920898438	2	565.811845	1129.60914	-0.16997	-9.6171E-05	1.3951	0.00078935	1.2251	0.00069318	565.8142539145769	12.76	0.44491	12.693	12.491	12.936	-0.067495					51	14	5	0	0	0	0.40403	1	206	206		2.7352	0.45242	1	103660	+		37830	15769	22094	22095	45740	45740					0.049516115293727125
RKEVIYNTIK	10	Unmodified	_RKEVIYNTIK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.3745727539062	2	632.374612	1262.73467	0.59345	0.00037528	-0.31437	-0.0001988	0.27908	0.00017648	632.3744457092291	44.825	1.0056	44.825	44.552	45.558	0					87	36	4	0	0	0	0.32615	1	10028	10028		19.362	0	1	3417700	+		37831	16705;23038	22095	22096	45741	45741					0.113813233855808
RKEVIYNTIK	10	Unmodified	_RKEVIYNTIK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.3746948242188	2	632.374612	1262.73467	0.48801	0.00030861	-0.21686	-0.00013714	0.27115	0.00017147	632.3744873296139	44.646	0.76814	44.714	44.463	45.232	0.068569					76	27	4	0	0	0	0.24548	2	9876	9876;9974		28.495	0	1	3454600	+		37832	16705;23038	22095	22096	45742;45743	45742					0.113813233855808
RKEVIYNTIK	10	Unmodified	_RKEVIYNTIK_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.3746948242188	2	632.374612	1262.73467	0.59797	0.00037814	-0.28518	-0.00018034	0.3128	0.0001978	632.3744606853836	44.612	1.0476	44.687	44.449	45.497	0.075047					93	38	4	0	0	0	0.10933	1	9874	9874		38.176	0	1	3380900	+		37833	16705;23038	22095	22096	45744	45744					0.113813233855808
RKFAKVAL	8	Unmodified	_RKFAKVAL_					0	0	0		ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2372741699219	2	466.805637	931.596721	-0.2272	-0.00010606	0.94287	0.00044014	0.71567	0.00033408	466.8059607762053	22.974	0.43471	22.974	22.763	23.197	0					22	14	2	0	0	0	0.34437	1	3322	3322		0.69038	0	1	53159			37834	8477	22096	22097	45745	45745					0.12818664647659261
RKFAKVAL	8	Unmodified	_RKFAKVAL_					0	0	0		ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2371520996094	2	466.805637	931.596721	-0.14404	-6.7239E-05	1.2889	0.00060167	1.1449	0.00053443	466.80621142558863	23.161	0.38768	23.074	22.883	23.27	-0.087608					23	13	2	0	0	0	0.34437	1	3350	3350		0.69038	0	1	58536			37835	8477	22096	22097	45746	45746					0.12818664647659261
RKFAKVAL	8	Unmodified	_RKFAKVAL_					0	0	0		ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	ENSG00000232434|ENST00000436881|AJM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.237060546875	2	466.805637	931.596721	0.15445	7.2099E-05	0.74127	0.00034603	0.89572	0.00041813	466.80587818017955	23.189	0.40901	23.144	22.925	23.334	-0.044867					22	14	2	0	0	0	0.34437	1	3355	3355		0.69038	0	1	68545			37836	8477	22096	22097	45747	45747					0.12818664647659261
RKFALKKGM	9	Unmodified	_RKFALKKGM_					0	0	0		Harlequin-int_dup372|chr10:84170027-84170994:-|2.229433011874135|0.252139802420439|3.14|509.0|20|2|sense	Harlequin-int_dup372|chr10:84170027-84170994:-|2.229433011874135|0.252139802420439|3.14|509.0|20|2|sense	Harlequin-int_dup372|chr10:84170027-84170994:-|2.229433011874135|0.252139802420439|3.14|509.0|20|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8328857421875	2	539.831329	1077.6481	0.6996	0.00037767	1.2665	0.00068367	1.9661	0.0010613	539.8324598518252	84.86	2.1187	84.86	84.186	86.305	0					187	80	4	0	0	0	0.31038	2	22272	22272;22318		7.2892	0	1	1269400			37837	12370	22097	22098	45748;45749	45748					0.11238665350060728
RKFALKKGM	9	Unmodified	_RKFALKKGM_					0	0	0		Harlequin-int_dup372|chr10:84170027-84170994:-|2.229433011874135|0.252139802420439|3.14|509.0|20|2|sense	Harlequin-int_dup372|chr10:84170027-84170994:-|2.229433011874135|0.252139802420439|3.14|509.0|20|2|sense	Harlequin-int_dup372|chr10:84170027-84170994:-|2.229433011874135|0.252139802420439|3.14|509.0|20|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8329467773438	2	539.831329	1077.6481	0.67923	0.00036667	1.4407	0.00077775	2.12	0.0011444	539.8324407357493	84.787	1.7078	84.868	84.278	85.986	0.080887					169	66	4	0	0	0	0.31038	1	22241	22241		7.2892	0	1	1033500			37838	12370	22097	22098	45750	45750					0.11238665350060728
RKFALKKGM	9	Unmodified	_RKFALKKGM_					0	0	0		Harlequin-int_dup372|chr10:84170027-84170994:-|2.229433011874135|0.252139802420439|3.14|509.0|20|2|sense	Harlequin-int_dup372|chr10:84170027-84170994:-|2.229433011874135|0.252139802420439|3.14|509.0|20|2|sense	Harlequin-int_dup372|chr10:84170027-84170994:-|2.229433011874135|0.252139802420439|3.14|509.0|20|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8328247070312	2	539.831329	1077.6481	0.74796	0.00040377	1.5277	0.00082468	2.2756	0.0012285	539.8324293348305	84.889	1.2807	84.876	84.415	85.695	-0.012833					167	50	5	0	0	0	0.31038	2	22248	22248;22292		7.2892	0	1	1280800			37839	12370	22097	22098	45751;45752	45751					0.11238665350060728
RKFFHLWRRI	10	Unmodified	_RKFFHLWRRI_					0	0	0		ENST00000370008.3_1_1:109351697-109351763:+|nuORF	ENST00000370008.3_1_1:109351697-109351763:+|nuORF	ENST00000370008.3_1_1:109351697-109351763:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.9587707519531	3	486.957957	1457.85204	0.30362	0.00014785	0.70951	0.0003455	1.0131	0.00049335	486.95877538362913	90.928	3.1727	91.019	88.145	91.318	0.090668					256	202	2	0	0	0	0.40854	1	24029	24029		1.9064	0.69154	1	1623800			37840	9788	22098	22099	45753	45753					0.14142945835715182
RKFNIIVF	8	Unmodified	_RKFNIIVF_					0	0	0			REV__Harlequin-int_dup467|chr19:52899759-52902003:-|1.2947376396248438|0.289692074971568|2.16|541.0|146|3|anti-sense	REV__Harlequin-int_dup467|chr19:52899759-52902003:-|1.2947376396248438|0.289692074971568|2.16|541.0|146|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.8075561523438	2	518.818744	1035.62294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.554	1	91.554	91.054	92.054	0.00046539								0	0	0	0.3683	1	24307	24307		6.3541	3.4649	1		+		37841	22699	22099	22100	45754	45754					0.10654933819137113
RKFVKLSG	8	Unmodified	_RKFVKLSG_					0	0	0			REV__ENSG00000121316|ENST00000240617|PLBD1	REV__ENSG00000121316|ENST00000240617|PLBD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2246398925781	2	467.795269	933.575986	-0.28531	-0.00013346	0.42998	0.00020114	0.14467	6.7677E-05	467.795390327146	13.473	0.14007	13.374	13.276	13.416	-0.099291					6	4	2	0	0	0	0.34437	1	443	443		0.69038	0	1	20576	+		37842	15117	22100	22101	45755	45755					0.10654074268006752
RKGQLVQKE	9	Unmodified	_RKGQLVQKE_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3250122070312	2	543.324922	1084.63529	0.4412	0.00023972	-0.030877	-1.6776E-05	0.41033	0.00022294	543.3249257376947	17.386	0.35641	17.386	17.242	17.598	0					28	12	3	0	0	0	0.33508	1	1644	1644		3.5965	0.60125	1	86253			37843	2461	22101	22102	45756	45756					0.09635925491488706
RKGQLVQKE	9	Unmodified	_RKGQLVQKE_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	543.324922	1084.63529	0.36396	0.00019775	0.13168	7.1543E-05	0.49564	0.00026929	543.3249985901998	17.637	0.40563	17.519	17.289	17.694	-0.11739	0.058182	0.00018209	NaN	3.5965	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71397			37844	2461	22101	22102							0.09635925491488706
RKGVMPPK	8	Unmodified	_RKGVMPPK_					0	0	0		ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENST00000525036.1_1_13:48877982-48934322:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7778015136719	2	456.776022	911.537492	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.321	1	13.254	12.754	13.754	-0.067496								0	0	0	0.37724	1	389	389		2.3027	0.24298	1				37845	11531	22102	22103	45757	45757					0.07818445361817794
RKGWQRLPE	9	Unmodified	_RKGWQRLPE_					0	0	0			REV__ENST00000536603.5_2_19:46511541-46520062:+|nuORF	REV__ENST00000536603.5_2_19:46511541-46520062:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8294677734375	2	585.330539	1168.64652	-0.096257	-5.6342E-05	0.43836	0.00025659	0.34211	0.00020025	585.3305840028254	12.572	0.17424	12.504	12.405	12.579	-0.06806					7	5	2	0	0	0	0.26257	1	179	179		0.52476	0	1	25146	+		37846	22083	22103	22104	45758	45758					0.06894747585670302
RKHETRLVEV	10	Unmodified	_RKHETRLVEV_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8705444335938	2	633.867486	1265.72042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.564	1	94.562	94.062	95.062	-0.0020142								0	0	0	0.3726	1	25230	25230		5.2969	1.7004	1				37847	2498	22104	22105	45759	45759					0.09818670957270115
RKHITKRF	8	Unmodified	_RKHITKRF_					0	0	0		ENSG00000121807|ENST00000445132|CCR2	ENSG00000121807|ENST00000445132|CCR2	ENSG00000121807|ENST00000445132|CCR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8264770507812	2	543.338167	1084.66178	0.28827	0.00015663	-1.5786	-0.00085771	-1.2903	-0.00070108	543.3374138465788	12.204	0.2484	12.107	11.929	12.178	-0.096607					16	10	3	0	0	0	0.34437	1	12	12		0.69038	0	1	67522			37848	3010	22105	22106	45760	45760					0.12283659173476735
RKHKRRRRKQ	10	Unmodified	_RKHKRRRRKQ_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.6471252441406	3	483.646776	1447.9185	0.20877	0.00010097	0.14854	7.1843E-05	0.35731	0.00017281	483.6468077678423	43.174	3.3203	43.174	42.624	45.945	0					316	121	5	0	0	0	0.41805	1	9450	9450		0.15932	0	1	11387000			37849	2124	22106	22107	45761	45761					0.21245574450313143
RKHKRRRRKQ	10	Unmodified	_RKHKRRRRKQ_					0	0	0		nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1	nc|ENSG00000107404|O14640-2|DVL1	nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.64697265625	3	483.646776	1447.9185	0.16822	8.1357E-05	0.18319	8.8599E-05	0.35141	0.00016996	483.64683283062817	42.857	2.963	42.949	42.607	45.571	0.091362					343	109	5	0	0	0	0.41805	1	9353	9353		0.15932	0	1	11087000			37850	2124	22106	22107	45762	45762					0.21245574450313143
RKHLRRLYRRQ	11	Unmodified	_RKHLRRLYRRQ_					0	0	0		ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.6610717773438	3	527.993953	1580.96003	0.29261	0.0001545	2.1586	0.0011397	2.4512	0.0012942	527.9951741449173	95.477	0.14085	95.477	95.376	95.517	0					24	13	2	0	0	0	0.33352	1	25495	25495		0	0	1	97178			37851	7573	22107	22108	45763	45763					0.1927871041900744
RKHLYGLF	8	Unmodified	_RKHLYGLF_					0	0	0		nc|ENSG00000071909|Q8WXR4-7|MYO3B	nc|ENSG00000071909|Q8WXR4-7|MYO3B	nc|ENSG00000071909|Q8WXR4-7|MYO3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2060546875	2	517.300719	1032.58688	0.56142	0.00029042	-1.2931	-0.0006689	-0.73164	-0.00037848	517.3000107314829	85.784	0.56463	85.784	85.366	85.931	0					28	21	2	0	0	0	0.34319	1	22427	22427		5.7604	0.46354	1	130160			37852	12584	22108	22109	45764	45764					0.07189476642270165
RKHQRVHT	8	Unmodified	_RKHQRVHT_					0	0	0		ENSG00000179909|ENST00000684351|ZNF154;ENSG00000170631|ENST00000394909|ZNF16	ENSG00000179909|ENST00000684351|ZNF154	ENSG00000179909|ENST00000684351|ZNF154	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3324584960938	2	531.307398	1060.60024	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.079	1	12.011	11.511	12.511	-0.06806								0	0	0	0.37664	1	19	19		2.5775	0	1				37853	7151	22109	22110	45765	45765					0.07236727474241889
RKHRIFTHL	9	Unmodified	_RKHRIFTHL_					0	0	0			REV__ENST00000428632.7_1_12:113682520-113726187:+|nuORF	REV__ENST00000428632.7_1_12:113682520-113726187:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.21563720703125	3	403.243874	1206.70979	-0.08147	-3.2852E-05	0.42189	0.00017012	0.34042	0.00013727	403.2440551291878	21.704	0.3873	21.604	21.417	21.804	-0.10034					21	13	2	0	0	0	0.2615	1	2955	2955		2.4985	0.75621	1	66852	+		37854	18470	22110	22111	45766	45766					0.11470733093574381
RKHRIQRWNLA	11	Unmodified	_RKHRIQRWNLA_					0	0	0		ENST00000469702.5_1_2:114462911-114480749:-|nuORF	ENST00000469702.5_1_2:114462911-114480749:-|nuORF	ENST00000469702.5_1_2:114462911-114480749:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.81060791015625	3	493.291887	1476.85383	0.30356	0.00014974	0.58129	0.00028675	0.88485	0.00043649	493.29191665030083	42.447	0.5775	42.532	42.153	42.731	0.085201					36	20	3	0	0	0	0.3333	1	9158	9158		1.3296	0	1	310760			37855	10860	22111	22112	45767	45767					0.13447954853722877
RKHRIQRWNLA	11	Unmodified	_RKHRIQRWNLA_					0	0	0		ENST00000469702.5_1_2:114462911-114480749:-|nuORF	ENST00000469702.5_1_2:114462911-114480749:-|nuORF	ENST00000469702.5_1_2:114462911-114480749:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	493.291887	1476.85383	0.2738	0.00013507	1.8081	0.00089192	2.0819	0.001027	493.29191581698103	42.725	0.36227	42.725	42.567	42.93	0	0.1172	0.0017845	NaN	1.3296	34	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258950			37856	10860	22111	22112							0.13447954853722877
RKHRLPPA	8	Unmodified	_RKHRLPPA_					0	0	0			REV__ENST00000493307.1_1_7:150020428-150023055:+|nuORF	REV__ENST00000493307.1_1_7:150020428-150023055:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2593994140625	2	487.80396	973.593367	0.16417	8.0085E-05	-0.77865	-0.00037983	-0.61448	-0.00029975	487.8036516081697	16.422	0.27885	16.422	16.295	16.574	0					17	9	2	0	0	0	0.34185	1	1334	1334		5.7604	0	1	34881	+		37857	21636	22112	22113	45768	45768					0.10551414593646768
RKHVALHQEF	10	Unmodified	_RKHVALHQEF_					0	0	0		ENST00000481123.1_1_7:139025293-139030447:+|nuORF;ENSG00000164898|ENST00000297534|FMC1;nc|ENSG00000164898|Q96HJ9-2|FMC1	ENST00000481123.1_1_7:139025293-139030447:+|nuORF	ENST00000481123.1_1_7:139025293-139030447:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.2230529785156	3	422.235156	1263.68364	0.21611	9.1249E-05	0.21915	9.2532E-05	0.43526	0.00018378	422.23516934688837	32.537	0.76488	32.592	32.182	32.946	0.055309					68	27	4	0	0	0	0.37297	1	6117	6117		8.4443	4.3277	1	344320			37858	5894	22113	22114	45769	45769					0.06234419131396862
RKIKELFSV	9	Unmodified	_RKIKELFSV_					0	0	0		nc|ENSG00000165325|Q05D60-2|DEUP1;ENSG00000165325|ENST00000298050|DEUP1	nc|ENSG00000165325|Q05D60-2|DEUP1	nc|ENSG00000165325|Q05D60-2|DEUP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2802734375	2	560.347866	1118.68118	0.24541	0.00013751	0.16738	9.3793E-05	0.41279	0.00023131	560.3478927235047	17.539	0.14619	17.539	17.452	17.598	0					6	4	2	0	0	0	0.26257	1	1670	1670		0.52476	0	1	15776			37859	5951	22114	22115	45770	45770					0.1265857067376146
RKIYQFLFP	9	Unmodified	_RKIYQFLFP_					0	0	0		ENSG00000079101|ENST00000692774|CLUL1	ENSG00000079101|ENST00000692774|CLUL1	ENSG00000079101|ENST00000692774|CLUL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3700561523438	2	606.350409	1210.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.8	1	116.78	116.28	117.28	-0.022781								0	0	0	0.2672	1	30249	30249		0.52476	0	1				37860	1124	22115	22116	45771	45771					0.08934874536362258
RKKASMHKKE	10	Unmodified	_RKKASMHKKE_					0	0	0		nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000157087|ENST00000360273|ATP2B2	nc|ENSG00000157087|Q01814-4|ATP2B2	nc|ENSG00000157087|Q01814-4|ATP2B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.8590698242188	2	621.858606	1241.70266	0.078075	4.8552E-05	0.75407	0.00046893	0.83215	0.00051748	621.8589861857347	24.204	0.59104	24.131	23.852	24.443	-0.072557					41	19	3	0	0	0	0.39325	1	3727	3727		8.1555	1.4324	1	92569			37861	5278	22116	22117	45772	45772					0.09147632430813246
RKKGIYITGR	10	Unmodified	_RKKGIYITGR_					0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.870849609375	2	596.369664	1190.72478	0.5094	0.00030379	-0.45915	-0.00027382	0.050253	2.997E-05	596.3693113043684	91.138	0.25298	91.229	91.191	91.444	0.090668					28	16	2	0	0	0	0.40262	1	24215	24215		2.9952	1.5133	1	152070	+		37862	16568	22117	22118	45773	45773					0.13704180170861946
RKKKEDEL	8	Unmodified	_RKKKEDEL_					0	0	0		ENSG00000153774|ENST00000283882|CFDP1;nc|ENSG00000153774|Q9UEE9-2|CFDP1;ENST00000566901.5_1_16:75428986-75467250:-|nuORF	ENSG00000153774|ENST00000283882|CFDP1	ENSG00000153774|ENST00000283882|CFDP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3034057617188	2	523.303655	1044.59276	0.61163	0.00032007	-0.42161	-0.00022063	0.19001	9.9435E-05	523.3032721893725	76.409	2.54	76.378	75.059	77.599	-0.031487					355	93	5	0	0	0	0.44569	1	19309	19309		7.2892	0	1	3309700			37863	5084	22118	22119	45774	45774					0.07224530363282611
RKKPPQVPNN	10	Unmodified	_RKKPPQVPNN_					0	0	0			REV__L1MA4A_dup2646|chr7:55461716-55462655:-|1.5252375065868096|0.4304615177296836|1.83|542.0|2|1|sense	REV__L1MA4A_dup2646|chr7:55461716-55462655:-|1.5252375065868096|0.4304615177296836|1.83|542.0|2|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3430786132812	2	589.343646	1176.67274	0.062049	3.6568E-05	-0.50741	-0.00029904	-0.44536	-0.00026247	589.3433082742267	97.484	0.85527	97.484	97.135	97.991	0					153	89	2	0	0	0	0.40992	1	26146	26146		1.6526	0.17072	1	132520	+		37864	22786	22119	22120	45775	45775					0.09147016757151505
RKKPPQVPNN	10	Unmodified	_RKKPPQVPNN_					0	0	0			REV__L1MA4A_dup2646|chr7:55461716-55462655:-|1.5252375065868096|0.4304615177296836|1.83|542.0|2|1|sense	REV__L1MA4A_dup2646|chr7:55461716-55462655:-|1.5252375065868096|0.4304615177296836|1.83|542.0|2|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3419189453125	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.51	1	112.5	112	113	-0.015625								0	0	0	0.38126	1	29267	29267		1.6526	0.32309	1		+		37865	22786	22119	22120	45776	45776					0.09147016757151505
RKKREYRLFLK	11	Unmodified	_RKKREYRLFLK_					0	0	0			REV__ENST00000530958.5_1_11:108094696-108094846:+|nuORF	REV__ENST00000530958.5_1_11:108094696-108094846:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.985595703125	3	512.987693	1535.94125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.642	1	92.731	92.231	93.231	0.089195								0	0	0	0.38222	1	24644	24644		0.094841	0.011491	1		+		37866	22016	22120	22121	45777	45777					0.19471736004584272
RKKTTFFRK	9	Unmodified	_RKKTTFFRK_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3706665039062	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.82	1	115.84	115.34	116.34	0.018738								0	0	0	0.26704	1	30074	30074		0.6015	0	1				37867	971	22121	22122	45778	45778					0.132924840334681
RKLHLIFFHV	10	Unmodified	_RKLHLIFFHV_					0	0	0			REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF	REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2674865722656	3	437.267909	1308.7819	-0.077082	-3.3705E-05	-0.26231	-0.0001147	-0.33939	-0.00014841	437.26767811067197	46.2	1.688	46.2	45.64	47.328	0					171	60	4	0	0	0	0.40854	1	10506	10506		1.9064	0.1641	1	7250800	+		37868	20783	22122	22123	45779	45779					0.13985647447270821
RKLHLIFFHV	10	Unmodified	_RKLHLIFFHV_					0	0	0			REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF	REV__ENST00000412669.1_1_7:90221116-90226630:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.267578125	3	437.267909	1308.7819	-0.12309	-5.3824E-05	-0.14923	-6.5252E-05	-0.27232	-0.00011908	437.26773201521036	45.995	1.6848	46.055	45.565	47.25	0.059834					200	61	5	0	0	0	0.40854	1	10456	10456		1.9064	0.1641	1	7201400	+		37869	20783	22122	22123	45780	45780					0.13985647447270821
RKLILARNPM	10	Unmodified	_RKLILARNPM_					0	0	0		ENST00000590414.6_1_19:38230075-38230369:-|nuORF	ENST00000590414.6_1_19:38230075-38230369:-|nuORF	ENST00000590414.6_1_19:38230075-38230369:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3703002929688	2	606.373892	1210.73323	0.4339	0.00026311	-3.103	-0.0018816	-2.6691	-0.0016185	606.3705526920451	91.817	0.17819	91.817	91.707	91.885	0					21	11	3	0	0	0	0.41512	1	24390	24390		1.6526	0.17072	1	100250			37870	12170	22123	22124	45781	45781					0.13629410815860865
RKLILARNPM	10	Unmodified	_RKLILARNPM_					0	0	0		ENST00000590414.6_1_19:38230075-38230369:-|nuORF	ENST00000590414.6_1_19:38230075-38230369:-|nuORF	ENST00000590414.6_1_19:38230075-38230369:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	606.373892	1210.73323	0.49534	0.00030036	-4.9931	-0.0030277	-4.4978	-0.0027274	606.3704738447179	91.745	0.085556	91.835	91.808	91.893	0.090668	0.0093883	-0.00040131	NaN	1.6526	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136150			37871	12170	22123	22124							0.13629410815860865
RKLPRSITH	9	Unmodified	_RKLPRSITH_					0	0	0		ENST00000514199.1_1_5:139944539-139945076:+|nuORF	ENST00000514199.1_1_5:139944539-139945076:+|nuORF	ENST00000514199.1_1_5:139944539-139945076:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3406372070312	2	554.340907	1106.66726	0.046031	2.5517E-05	-0.046188	-2.5604E-05	-0.00015663	-8.6827E-08	554.3410468894223	15.21	0.39873	15.21	15.072	15.471	0					20	13	2	0	0	0	0.35563	1	1003	1003		0.52476	0	1	41860			37872	11412	22124	22125	45782	45782					0.11819337965312116
RKLTHLRKR	9	Unmodified	_RKLTHLRKR_					0	0	0		nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	nc|ENSG00000164542|Q8NCT3|MATCAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2156982421875	3	403.266791	1206.77854	-0.14567	-5.8746E-05	-0.45998	-0.00018549	-0.60565	-0.00024424	403.26661080076485	21.932	0.22221	21.932	21.795	22.017	0					11	8	2	0	0	0	0.26238	1	2970	2970		0.23584	0	1	52075			37873	12804	22125	22126	45783	45783					0.1834239739325767
RKLWRRPRRR	10	Unmodified	_RKLWRRPRRR_					0	0	0			REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.8105773925781	3	493.983388	1478.92833	0.55897	0.00027612	3.3047	0.0016325	3.8637	0.0019086	494.320048085412	41.804	0.78908	41.901	41.77	42.559	0.096622					41	27	2	0	0	0	0.31969	1	9127	9127		5.7834	4.8579	1	457900	+		37874	19521	22126	22127	45784	45784					0.2080276245569621
RKMFIKHYREW	11	Unmodified	_RKMFIKHYREW_					0	0	0		nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENSG00000023287|ENST00000025008|RB1CC1	nc|ENSG00000023287|Q8TDY2-2|RB1CC1	nc|ENSG00000023287|Q8TDY2-2|RB1CC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.292724609375	3	531.953884	1592.83982	0.57164	0.00030409	2.5566	0.00136	3.1282	0.0016641	532.2904016148362	40.298	1.419	40.298	39.886	41.305	0					135	51	4	0	0	0	0.46971	1	8562	8562		2.084	1.9891	1	790810			37875	521	22127	22128	45785	45785					0.06711541310369284
RKMFIKHYREW	11	Unmodified	_RKMFIKHYREW_					0	0	0		nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENSG00000023287|ENST00000025008|RB1CC1	nc|ENSG00000023287|Q8TDY2-2|RB1CC1	nc|ENSG00000023287|Q8TDY2-2|RB1CC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2908325195312	3	531.953884	1592.83982	0.57688	0.00030687	2.4192	0.0012869	2.9961	0.0015938	531.9545812109892	40.028	1.1752	40.121	39.83	41.005	0.09267					103	42	3	0	0	0	0.45629	1	8535	8535		3.8459	3.7511	1	840410			37876	521	22127	22128	45786	45786					0.06711541310369284
RKMRWIRLKQK	11	Unmodified	_RKMRWIRLKQK_					0	0	0			REV__ENST00000346991.9_1_15:40939257-40942558:+|nuORF	REV__ENST00000346991.9_1_15:40939257-40942558:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8140869140625	3	514.98904	1541.94529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.185	1	12.185	11.685	12.685	0								0	0	0	0.37637	1	51	51		2.4348	1.22	1		+		37877	20155	22128	22129	45787	45787					0.1959950222662883
RKMRWIRLKQK	11	Unmodified	_RKMRWIRLKQK_					0	0	0			REV__ENST00000346991.9_1_15:40939257-40942558:+|nuORF	REV__ENST00000346991.9_1_15:40939257-40942558:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.814208984375	3	514.98904	1541.94529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.129	1	12.032	11.532	12.532	-0.096607								0	0	0	0.38124	1	37	37		1.2148	0.76031	1		+		37878	20155	22128	22129	45788	45788					0.1959950222662883
RKMYLRELY	9	Unmodified	_RKMYLRELY_					0	0	0			REV__ENSG00000168904|ENST00000301981|LRRC28	REV__ENSG00000168904|ENST00000301981|LRRC28	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.35986328125	2	636.350083	1270.68561	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.606	1	93.606	93.106	94.106	0								0	0	0	0.2672	1	24937	24937		0.52476	0	1		+		37879	17487	22129	22130	45789	45789					0.06109711825024533
RKNIERHL	8	Unmodified	_RKNIERHL_					0	0	0			REV__ENST00000489885.1_1_17:7094029-7095081:-|nuORF	REV__ENST00000489885.1_1_17:7094029-7095081:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7531127929688	2	533.317432	1064.62031	0.20164	0.00010754	-0.18528	-9.8812E-05	0.016362	8.7262E-06	533.3173644055628	15.102	0.43232	15.102	14.949	15.382	0					31	14	3	0	0	0	0.34414	1	940	940		2.0598	0.21551	1	125460	+		37880	21596	22130	22131	45790	45790					0.09058478414181081
RKNIERHL	8	Unmodified	_RKNIERHL_					0	0	0			REV__ENST00000489885.1_1_17:7094029-7095081:-|nuORF	REV__ENST00000489885.1_1_17:7094029-7095081:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7532958984375	2	533.317432	1064.62031	0.13215	7.048E-05	0.0083092	4.4314E-06	0.14046	7.4911E-05	533.3173797002856	15.237	0.48136	15.127	14.955	15.436	-0.10981					34	16	3	0	0	0	0.34353	1	993	993		4.756	0.42677	1	107460	+		37881	21596	22130	22131	45791	45791					0.09058478414181081
RKNKQAGR	8	Unmodified	_RKNKQAGR_					0	0	0		ENST00000475846.6_3_6:135607593-135622557:-|nuORF;ENSG00000135541|ENST00000265602|AHI1	ENST00000475846.6_3_6:135607593-135622557:-|nuORF	ENST00000475846.6_3_6:135607593-135622557:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.3079833984375	2	479.288674	956.562795	-0.17747	-8.5061E-05	-0.066874	-3.2052E-05	-0.24435	-0.00011711	479.2886061222997	12.451	0.61367	12.451	12.364	12.977	0					32	20	3	0	0	0	0.34092	1	135	135		13.508	1.8676	1	238400			37882	3883	22131	22132	45792	45792					0.08277636208606509
RKNKQAGR	8	Unmodified	_RKNKQAGR_					0	0	0		ENST00000475846.6_3_6:135607593-135622557:-|nuORF;ENSG00000135541|ENST00000265602|AHI1	ENST00000475846.6_3_6:135607593-135622557:-|nuORF	ENST00000475846.6_3_6:135607593-135622557:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.3078918457031	2	479.288674	956.562795	-0.18103	-8.6767E-05	0.14783	7.0854E-05	-0.033202	-1.5913E-05	479.2887361576223	12.488	0.29662	12.42	12.313	12.61	-0.06806					22	9	4	0	0	0	0.34131	1	142	142		12.532	0	1	251190			37883	3883	22131	22132	45793	45793					0.08277636208606509
RKNRVSQI	8	Unmodified	_RKNRVSQI_					0	0	0			REV__ENST00000519683.1_1_5:153826347-153830818:+|nuORF	REV__ENST00000519683.1_1_5:153826347-153830818:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7904968261719	2	500.804157	999.593761	0.25611	0.00012826	-0.4345	-0.0002176	-0.17839	-8.9338E-05	500.8041955508323	55.407	0.4612	55.407	55.246	55.707	0					29	16	3	0	0	0	0.44389	1	13215	13215		7.9102	7.9102	1	245370	+		37884	17166	22132	22133	45794	45794					0.09394789522855262
RKNRVSQI	8	Unmodified	_RKNRVSQI_					0	0	0			REV__ENST00000519683.1_1_5:153826347-153830818:+|nuORF	REV__ENST00000519683.1_1_5:153826347-153830818:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	500.804157	999.593761	0.34554	0.00017305	0.22856	0.00011447	0.5741	0.00028751	500.8045059102232	55.508	0.4004	55.489	55.349	55.75	-0.019081	0.041162	0.00044395	NaN	7.9102	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277120	+		37885	17166	22132	22133							0.09394789522855262
RKPQNVGIKKD	11	Unmodified	_RKPQNVGIKKD_					0	0	0			REV__nc|ENSG00000166226|P78371-2|CCT2	REV__nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8826904296875	2	641.883136	1281.75172	-0.017622	-1.1311E-05	-0.72082	-0.00046268	-0.73844	-0.00047399	641.8826902814367	100.87	0.24463	100.87	100.82	101.07	0					48	34	2	0	0	0	0.47546	1	26924	26924		1.3295	0	1	93243	+		37886	17303	22133	22134	45795	45795					0.12211243991396259
RKPQNVGIKKD	11	Unmodified	_RKPQNVGIKKD_					0	0	0			REV__nc|ENSG00000166226|P78371-2|CCT2	REV__nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8822021484375	2	641.883136	1281.75172	0.32115	0.00020614	-0.97375	-0.00062503	-0.6526	-0.00041889	641.8824133288683	96.97	0.37371	97.041	96.801	97.175	0.070465					63	34	2	0	0	0	0.47546	1	25878	25878		1.3295	0.13619	1	108470	+		37887	17303	22133	22134	45796	45796					0.12211243991396259
RKPQRRRPWTP	11	Unmodified	_RKPQRRRPWTP_					0	0	0			REV__ENST00000287844.6_1_7:150922068-150924280:-|nuORF	REV__ENST00000287844.6_1_7:150922068-150924280:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.8108215332031	3	493.291887	1476.85383	0.33987	0.00016765	0.28911	0.00014261	0.62897	0.00031027	493.29194023161324	42.476	0.51453	42.567	42.23	42.744	0.091362					26	17	2	0	0	0	0.3333	1	9180	9180		1.3296	0	1	340740	+		37888	19740	22134	22135	45797	45797					0.13447954853677402
RKPRVARKHE	10	Unmodified	_RKPRVARKHE_					0	0	0			REV__nc|ENSG00000197321|O95425-2|SVIL	REV__nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.571044921875	3	426.261817	1275.76362	-0.28146	-0.00011998	-0.55702	-0.00023744	-0.83848	-0.00035741	426.2617893891243	15.704	0.22492	15.704	15.591	15.816	0					11	7	2	0	0	0	0.32168	1	1073	1073		0.56317	0.40385	1	11341	+		37889	18727	22135	22136	45798	45798					0.13676905525267102
RKPYHKKRKY	10	Unmodified	_RKPYHKKRKY_					0	0	0		ENST00000470475.1_1_1:45241268-45242451:+|nuORF;ENSG00000142937|ENST00000396651|RPS8	ENST00000470475.1_1_1:45241268-45242451:+|nuORF	ENST00000470475.1_1_1:45241268-45242451:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.95184326171875	3	468.6176	1402.83097	-0.31621	-0.00014818	-0.11005	-5.1571E-05	-0.42626	-0.00019975	468.9517533873391	12.203	0.42621	12.203	12.1	12.526	0					39	15	4	0	0	0	0.29874	1	61	61		20.581	18.675	1	100160			37890	4470	22136	22137	45799	45799					0.14566935736206688
RKPYHKKRKY	10	Unmodified	_RKPYHKKRKY_					0	0	0		ENST00000470475.1_1_1:45241268-45242451:+|nuORF;ENSG00000142937|ENST00000396651|RPS8	ENST00000470475.1_1_1:45241268-45242451:+|nuORF	ENST00000470475.1_1_1:45241268-45242451:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	468.6176	1402.83097	-0.17932	-8.4033E-05	-0.18982	-8.8952E-05	-0.36914	-0.00017299	468.6175006075073	12.246	0.45657	12.15	12.037	12.493	-0.096607	-0.049727	-5.2674E-05	NaN	20.581	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83029			37891	4470	22136	22137							0.14566935736206688
RKPYHKKRKY	10	Unmodified	_RKPYHKKRKY_					0	0	0		ENST00000470475.1_1_1:45241268-45242451:+|nuORF;ENSG00000142937|ENST00000396651|RPS8	ENST00000470475.1_1_1:45241268-45242451:+|nuORF	ENST00000470475.1_1_1:45241268-45242451:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	468.6176	1402.83097	-0.23019	-0.00010787	-0.16024	-7.5093E-05	-0.39044	-0.00018297	468.61749119948354	12.314	0.47961	12.246	12.1	12.579	-0.068059	0.046269	-1.1096E-05	NaN	20.581	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63220			37892	4470	22136	22137							0.14566935736206688
RKQCYMTKLN	10	Unmodified	_RKQCYMTKLN_					0	0	0			REV__ENST00000224140.5_1_9:135204376-135204427:-|nuORF	REV__ENST00000224140.5_1_9:135204376-135204427:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.8346557617188	2	642.8312	1283.64785	0.54483	0.00035023	3.0194	0.001941	3.5643	0.0022912	643.3342591851228	79.674	0.52374	79.645	79.396	79.919	-0.028931					24	19	2	0	0	0	0.40106	1	20603	20603		3.2813	0.28607	1	106940	+		37893	19433	22137	22138	45800	45800					0.017368775678960446
RKQLEDVSHK	10	Unmodified	_RKQLEDVSHK_					0	0	0			REV__nc|ENSG00000187164|A0MZ66-2|SHTN1	REV__nc|ENSG00000187164|A0MZ66-2|SHTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.34375	2	620.343843	1238.67313	0.059601	3.6973E-05	-0.11558	-7.1702E-05	-0.055983	-3.4729E-05	620.3436709522667	15.825	0.3559	15.825	15.591	15.947	0					23	12	2	0	0	0	0.4155	1	1157	1157		0.35063	0	1	46365	+		37894	18494	22138	22139	45801	45801					0.06334391686323215
RKQLSAINEET	11	Unmodified	_RKQLSAINEET_					0	0	0			REV__nc|ENSG00000173230|Q14789-4|GOLGB1	REV__nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	645.345458984375	2	644.846416	1287.67828	0.54682	0.00035262	-1.6631	-0.0010724	-1.1163	-0.00071981	645.8485502027634	91.06	0.41544	91.061	90.859	91.275	0.00047302					58	29	3	0	0	0	0.44828	1	24173	24173		4.897	0	1	946940	+		37895	17772	22139	22140	45802	45802					0.04594650758258467
RKQPWGLV	8	Unmodified	_RKQPWGLV_					0	0	0		nc|ENSG00000023171|Q3KR37-3|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENST00000479212.5_1_3:113627916-113664322:+|nuORF;nc|ENSG00000178075|Q8IYS0-2|GRAMD1C;ENSG00000178075|ENST00000358160|GRAMD1C;ENSG00000023171|ENST00000635736|GRAMD1B	nc|ENSG00000023171|Q3KR37-3|GRAMD1B;ENSG00000023171|ENST00000635736|GRAMD1B	nc|ENSG00000023171|Q3KR37-3|GRAMD1B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2851867675781	2	492.292894	982.571235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.406	1	33.406	32.906	33.906	0								0	0	0	0.36961	1	6476	6476		5.7604	0.52976	1				37896	12567;519	22140	22141	45803	45803					0.07925190125240533
RKQRPGEER	9	Unmodified	_RKQRPGEER_					0	0	0		nc|ENSG00000106823|O94769-2|ECM2;ENSG00000106823|ENST00000344604|ECM2	nc|ENSG00000106823|O94769-2|ECM2	nc|ENSG00000106823|O94769-2|ECM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3206176757812	2	578.320703	1154.62685	0.38905	0.00022499	0.414	0.00023942	0.80304	0.00046442	578.320734328455	82.219	2.6522	82.219	81.302	83.954	0					240	103	3	0	0	0	0.33018	1	21384	21384		4.3292	0	1	835630			37897	2104	22141	22142	45804	45804					0.05572371574908175
RKQRPGEER	9	Unmodified	_RKQRPGEER_					0	0	0		nc|ENSG00000106823|O94769-2|ECM2;ENSG00000106823|ENST00000344604|ECM2	nc|ENSG00000106823|O94769-2|ECM2	nc|ENSG00000106823|O94769-2|ECM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3214111328125	2	578.320703	1154.62685	0.31024	0.00017942	0.41252	0.00023857	0.72276	0.00041799	578.3207372612743	82.173	2.3333	82.242	81.461	83.795	0.068985					204	95	3	0	0	0	0.33018	1	21434	21434		4.3292	0	1	1075100			37898	2104	22141	22142	45805	45805					0.05572371574908175
RKQRPGEER	9	Unmodified	_RKQRPGEER_					0	0	0		nc|ENSG00000106823|O94769-2|ECM2;ENSG00000106823|ENST00000344604|ECM2	nc|ENSG00000106823|O94769-2|ECM2	nc|ENSG00000106823|O94769-2|ECM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3213500976562	2	578.320703	1154.62685	0.38603	0.00022325	0.4927	0.00028494	0.87872	0.00050818	578.3207795532456	82.408	2.4147	82.387	81.478	83.892	-0.020584					239	99	3	0	0	0	0.33018	1	21399	21399		4.3292	0	1	1098200			37899	2104	22141	22142	45806	45806					0.05572371574908175
RKRADLKK	8	Unmodified	_RKRADLKK_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2769775390625	2	507.830175	1013.6458	0.5785	0.00029378	0.71889	0.00036508	1.2974	0.00065886	507.83051109997683	47.824	0.78265	47.824	47.549	48.331	0					39	27	3	0	0	0	0.3408	1	10868	10868		14.838	0	1	1444200			37900	5952	22142	22143	45807	45807					0.1395195293659981
RKREKRKDL	9	Unmodified	_RKREKRKDL_					0	0	0		ENST00000604081.1_1_12:54388028-54388532:-|nuORF	ENST00000604081.1_1_12:54388028-54388532:-|nuORF	ENST00000604081.1_1_12:54388028-54388532:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.718505859375	3	410.258072	1227.75239	0.25193	0.00010336	-1.587	-0.00065109	-1.3351	-0.00054774	410.2573720641553	83.053	0.47152	83.127	82.956	83.427	0.073097					21	17	2	0	0	0	0.26252	1	21658	21658		0.18151	0	1	75445			37901	12277	22143	22144	45808	45808					0.14762083431128303
RKREPPRAK	9	Unmodified	_RKREPPRAK_					0	0	0		ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2	ENST00000480912.5_1_6:31847863-31860642:-|nuORF	ENST00000480912.5_1_6:31847863-31860642:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.8063354492188	2	569.351806	1136.68906	0.21675	0.00012341	0.73384	0.00041781	0.95059	0.00054122	569.3523820297792	24.606	0.44949	24.606	24.423	24.872	0					25	14	2	0	0	0	0.26257	1	3757	3757		0.52476	0	1	69845			37902	8220	22144	22145	45809	45809					0.12618142713881753
RKREPPRAK	9	Unmodified	_RKREPPRAK_					0	0	0		ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2	ENST00000480912.5_1_6:31847863-31860642:-|nuORF	ENST00000480912.5_1_6:31847863-31860642:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	569.351806	1136.68906	0.29359	0.00016716	0.32413	0.00018454	0.61772	0.0003517	569.3520326241885	24.778	0.50401	24.722	24.544	25.048	-0.055931	0.033113	-0.00025556	NaN	0.52476	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72824			37903	8220	22144	22145							0.12618142713881753
RKRFQRHQP	9	Unmodified	_RKRFQRHQP_					0	0	0		ENSG00000170122|ENST00000382500|FOXD4	ENSG00000170122|ENST00000382500|FOXD4	ENSG00000170122|ENST00000382500|FOXD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.8597412109375	2	626.860329	1251.70611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.559	1	99.553	99.053	100.05	-0.006897								0	0	0	0.25631	1	26662	26662		4.3292	2.2695	1				37904	6423	22145	22146	45810	45810					0.0903206331970523
RKRGEPGPPLG	11	Unmodified	_RKRGEPGPPLG_					0	0	0			REV__nc|ENSG00000089639|Q9P107-2|GMIP	REV__nc|ENSG00000089639|Q9P107-2|GMIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3359375	2	582.335821	1162.65709	0.031471	1.8327E-05	0.61049	0.00035551	0.64196	0.00037384	582.3360510980168	15.426	0.50017	15.426	15.154	15.654	0					26	16	2	0	0	0	0.47825	1	1048	1048		0.96228	0.2719	1	69246	+		37905	14031	22146	22147	45811	45811					0.0822673024008509
RKRLMAAA	8	Unmodified	_RKRLMAAA_					0	0	0		ENST00000263253.8_1_22:41488404-41488704:+|nuORF	ENST00000263253.8_1_22:41488404-41488704:+|nuORF	ENST00000263253.8_1_22:41488404-41488704:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.27734375	2	458.779096	915.54364	-0.17646	-8.0958E-05	-0.3084	-0.00014149	-0.48487	-0.00022245	458.77897253793213	12.544	0.16946	12.448	12.324	12.493	-0.096607					8	5	2	0	0	0	0.34337	1	162	162		5.2307	0.47466	1	123780			37906	9001	22147	22148	45812	45812					0.08248963593337066
RKRMQVKEPEK	11	Unmodified	_RKRMQVKEPEK_					0	0	0		ENSG00000198756|ENST00000361927|COLGALT2	ENSG00000198756|ENST00000361927|COLGALT2	ENSG00000198756|ENST00000361927|COLGALT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.94158935546875	3	476.941644	1427.8031	-0.019753	-9.421E-06	-0.47345	-0.00022581	-0.4932	-0.00023523	476.94156248209356	25.507	0.88641	25.451	24.999	25.885	-0.055931					88	30	4	0	0	0	0.46002	1	4050	4050		3.3557	3.3557	1	610000			37907	8119	22148	22149	45813	45813					0.10631244693809094
RKRMQVKEPEK	11	Unmodified	_RKRMQVKEPEK_					0	0	0		ENSG00000198756|ENST00000361927|COLGALT2	ENSG00000198756|ENST00000361927|COLGALT2	ENSG00000198756|ENST00000361927|COLGALT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.9413757324219	3	476.941644	1427.8031	-0.065477	-3.1229E-05	-0.34	-0.00016216	-0.40548	-0.00019339	476.9415659840672	25.583	0.93473	25.552	25.047	25.982	-0.031408					100	33	4	0	0	0	0.44598	1	4108	4108		5.1984	2.7637	1	690290			37908	8119	22148	22149	45814	45814					0.10631244693809094
RKRNSIQIY	9	Unmodified	_RKRNSIQIY_					0	0	0		ENSG00000171659|ENST00000378142|GPR34	ENSG00000171659|ENST00000378142|GPR34	ENSG00000171659|ENST00000378142|GPR34	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.34228515625	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.69	1	114.69	114.19	115.19	0								0	0	0	0.2672	1	29745	29745		0.52476	0	1				37909	6567	22149	22150	45815	45815					0.09147016757151505
RKRNSIQIY	9	Unmodified	_RKRNSIQIY_					0	0	0		ENSG00000171659|ENST00000378142|GPR34	ENSG00000171659|ENST00000378142|GPR34	ENSG00000171659|ENST00000378142|GPR34	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3441162109375	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.99	1	120.02	119.52	120.52	0.027756								0	0	0	0.2672	1	31017	31017		0.52476	0	1				37910	6567	22149	22150	45816	45816					0.09147016757151505
RKRRGGTRPPG	11	Unmodified	_RKRRGGTRPPG_					0	0	0		ENST00000449111.5_1_X:149106847-149108905:+|nuORF	ENST00000449111.5_1_X:149106847-149108905:+|nuORF	ENST00000449111.5_1_X:149106847-149108905:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8701171875	2	619.371061	1236.72757	0.11983	7.4222E-05	-1.9811	-0.0012271	-1.8613	-0.0011528	619.3707405203077	91.712	1.9109	91.803	91.166	93.077	0.090675					275	137	3	0	0	0	0.46475	1	24531	24531		2.7352	0.23671	1	768030			37911	10626	22150	22151	45817	45817					0.11867448348402831
RKRRPPDAK	9	Unmodified	_RKRRPPDAK_					0	0	0			REV__ENST00000315762.5_9:67793260-67793749:+|nuORF	REV__ENST00000315762.5_9:67793260-67793749:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3217163085938	2	562.343981	1122.67341	0.22932	0.00012896	-1.3767	-0.00077419	-1.1474	-0.00064523	562.3429780407859	96.183	0.59998	96.261	96.013	96.613	0.077415					81	58	2	0	0	0	0.26168	1	25740	25740		1.8442	0	1	89823	+		37912	19934	22151	22152	45818	45818					0.11697856196815337
RKRRPPDAK	9	Unmodified	_RKRRPPDAK_					0	0	0			REV__ENST00000315762.5_9:67793260-67793749:+|nuORF	REV__ENST00000315762.5_9:67793260-67793749:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	562.343981	1122.67341	0.30883	0.00017367	-1.5893	-0.00089371	-1.2804	-0.00072004	562.3429474658977	95.956	0.44519	95.952	95.755	96.2	-0.0038147	-0.15413	-0.00012424	NaN	3.9444	55	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96426	+		37913	19934	22151	22152							0.11697856196815337
RKRRRWNKKSG	11	Unmodified	_RKRRRWNKKSG_					0	0	0			REV__nc|ENSG00000137309|P17096-3|HMGA1	REV__nc|ENSG00000137309|P17096-3|HMGA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.6333923339844	3	491.299153	1470.87563	0.28203	0.00013856	0.44781	0.00022001	0.72984	0.00035857	491.29922267296126	104.4	0.79325	104.4	104.09	104.88	0.0011444					360	108	4	0	0	0	0.48212	1	27709	27709		0.45452	0.45452	1	2056600	+		37914	23007	22152	22153	45819	45819					0.15902759602249716
RKRRRWNKKSG	11	Unmodified	_RKRRRWNKKSG_					0	0	0			REV__nc|ENSG00000137309|P17096-3|HMGA1	REV__nc|ENSG00000137309|P17096-3|HMGA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.6333923339844	3	491.299153	1470.87563	0.28203	0.00013856	0.44781	0.00022001	0.72984	0.00035857	491.29922267296126	104.4	0.79325	104.4	104.09	104.88	0.0011444					360	108	4	0	0	0	0.33347	1	27709	27709		0.45452	0.45452	1	2056600	+		37915	23007	22152	22153	45820	45820					0.15902759602249716
RKRRTSLKL	9	Unmodified	_RKRRTSLKL_					0	0	0		ENSG00000099901|ENST00000430524|RANBP1	ENSG00000099901|ENST00000430524|RANBP1	ENSG00000099901|ENST00000430524|RANBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.3820190429688	2	579.383106	1156.75166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.55	1	112.53	112.03	113.03	-0.015625								0	0	0	0.26734	1	29276	29276		0.45834	0.057624	1				37916	1502	22153	22154	45821	45821					0.1795528878208188
RKRRTSLKL	9	Unmodified	_RKRRTSLKL_					0	0	0		ENSG00000099901|ENST00000430524|RANBP1	ENSG00000099901|ENST00000430524|RANBP1	ENSG00000099901|ENST00000430524|RANBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.383544921875	2	579.383106	1156.75166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.88	1	112.87	112.37	113.37	-0.017303								0	0	0	0.26734	1	29354	29354		0.45834	0.10771	1				37917	1502	22153	22154	45822	45822					0.1795528878208188
RKRRTSLKL	9	Unmodified	_RKRRTSLKL_					0	0	0		ENSG00000099901|ENST00000430524|RANBP1	ENSG00000099901|ENST00000430524|RANBP1	ENSG00000099901|ENST00000430524|RANBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.3831176757812	2	579.383106	1156.75166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.94	1	112.96	112.46	113.46	0.014824								0	0	0	0.26734	1	29388	29388		0.45834	0.10771	1				37918	1502	22153	22154	45823	45823					0.1795528878208188
RKRSTSFLRVL	11	Unmodified	_RKRSTSFLRVL_					0	0	0			REV__ENST00000466831.2_1_13:24796959-24798912:+|nuORF	REV__ENST00000466831.2_1_13:24796959-24798912:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.948974609375	3	454.949127	1361.82555	0.23745	0.00010803	-0.37195	-0.00016922	-0.1345	-6.1189E-05	454.94887307180625	37.231	0.51623	37.318	37.062	37.578	0.08741					40	18	3	0	0	0	0.45822	1	7685	7685		3.5927	0	1	335220	+		37919	18228	22154	22155	45824	45824					0.15911212153719134
RKRVDKVFEVF	11	Unmodified	_RKRVDKVFEVF_					0	0	0			REV__nc|ENSG00000100938|Q9P2T1-2|GMPR2	REV__nc|ENSG00000100938|Q9P2T1-2|GMPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.94561767578125	3	474.945383	1421.81432	-0.14829	-7.0427E-05	0.30111	0.00014301	0.15282	7.2583E-05	475.2798409766901	42.561	0.48531	42.561	42.33	42.816	0					43	17	3	0	0	0	0.43513	1	9298	9298		6.6235	2.2173	1	522270	+		37920	22914	22155	22156	45825	45825					0.1202839005959504
RKRVIHRRR	9	Unmodified	_RKRVIHRRR_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.79150390625	2	638.918513	1275.82247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.69	1	102.68	102.18	103.18	-0.0033646								0	0	0	0.2672	1	27337	27337		0.52476	0	1		+		37921	16354	22156	22157	45826	45826					0.1955942661024892
RKRVKFTTFT	10	Unmodified	_RKRVKFTTFT_					0	0	0		ENSG00000151952|ENST00000422113|TMEM132D;nc|ENSG00000151952|Q14C87-2|TMEM132D;ENSG00000181291|ENST00000631683|TMEM132E	ENSG00000151952|ENST00000422113|TMEM132D;ENSG00000181291|ENST00000631683|TMEM132E	ENSG00000151952|ENST00000422113|TMEM132D	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.3853759765625	2	642.382771	1282.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.885	1	96.885	96.385	97.385	0								0	0	0	0.38202	1	25898	25898		0.40072	0	1				37922	4994;7229	22157	22158	45827	45827					0.12092449342367217
RKSREYEQLK	10	Unmodified	_RKSREYEQLK_					0	0	0		ENSG00000068354|ENST00000376771|TBC1D25	ENSG00000068354|ENST00000376771|TBC1D25	ENSG00000068354|ENST00000376771|TBC1D25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.6359558105469	3	446.249242	1335.7259	-0.84767	-0.00037827	2.1773	0.00097164	1.3297	0.00059337	446.2500445216164	34.998	0.47152	35.074	34.933	35.405	0.075306					23	16	2	0	0	0	0.32106	1	6958	6958		2.8433	0.4085	1	118570			37923	881	22158	22159	45828	45828					0.07146349749109504
RKTHKISQ	8	Unmodified	_RKTHKISQ_					0	0	0			REV__nc|ENSG00000115825|O94806-2|PRKD3	REV__nc|ENSG00000115825|O94806-2|PRKD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.79071044921875	2	499.298707	996.582862	0.1288	6.4307E-05	0.88121	0.00043999	1.01	0.00050429	499.2993492388987	22.465	0.41257	22.42	22.266	22.679	-0.044867					16	13	2	0	0	0	0.45431	1	3141	3141		4.3292	0	1	29983	+		37924	14897	22159	22160	45829	45829					0.08443387148565762
RKTNLTTFNPS	11	Unmodified	_RKTNLTTFNPS_					0	0	0		ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	639.8438110351562	2	639.843676	1277.6728	0.3811	0.00024385	-0.46488	-0.00029745	-0.083778	-5.3605E-05	639.8435595937475	91.065	0.63921	91.065	90.807	91.446	0					249	47	7	0	0	0	0.43149	1	24250	24250		7.1017	1.3699	1	11734000			37925	6994	22160	22161	45830	45830					0.04506971966452511
RKTNLTTFNPS	11	Unmodified	_RKTNLTTFNPS_					0	0	0		ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	639.8443603515625	2	639.843676	1277.6728	0.011937	7.6375E-06	0.043034	2.7535E-05	0.05497	3.5172E-05	639.8438516379643	98.246	0.545	98.246	98.026	98.571	0					232	63	6	0	0	0	0.43149	1	26266	26266		7.1017	1.3699	1	1159500			37926	6994	22160	22161	45831	45831					0.04506971966452511
RKTNLTTFNPS	11	Unmodified	_RKTNLTTFNPS_					0	0	0		ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	639.8449096679688	2	639.843676	1277.6728	0.52397	0.00033526	-0.59094	-0.00037811	-0.066976	-4.2854E-05	639.8434770334056	90.936	0.69865	91.027	90.766	91.465	0.090675					260	51	7	0	0	0	0.43149	1	24060	24060		7.1017	1.3699	1	10974000			37927	6994	22160	22161	45832	45832					0.04506971966452511
RKTNLTTFNPS	11	Unmodified	_RKTNLTTFNPS_					0	0	0		ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	639.8441772460938	2	639.843676	1277.6728	0.51057	0.00032669	-0.20531	-0.00013137	0.30526	0.00019532	639.8436643071198	91.72	0.45306	91.811	91.537	91.99	0.090675					56	29	2	0	0	0	0.43149	1	24321	24321		7.1017	1.3699	1	453230			37928	6994	22160	22161	45833	45833					0.04506971966452511
RKTNLTTFNPS	11	Unmodified	_RKTNLTTFNPS_					0	0	0		ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	639.8438110351562	2	639.843676	1277.6728	0.31206	0.00019967	-0.026224	-1.6779E-05	0.28584	0.00018289	639.8436502740379	98.207	0.53349	98.268	97.964	98.497	0.061523					246	62	5	0	0	0	0.43149	3	26240	26240;26277;26312		7.1017	1.3699	1	1616500			37929	6994	22160	22161	45834;45835;45836	45834					0.04506971966452511
RKTNLTTFNPS	11	Unmodified	_RKTNLTTFNPS_					0	0	0		ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	639.8436889648438	2	639.843676	1277.6728	0.68359	0.00043739	-2.2658	-0.0014498	-1.5822	-0.0010124	639.843419410379	91.814	0.69945	91.815	91.533	92.232	0.00046539					153	43	7	0	0	0	0.43149	2	24370	24370;24416		7.1017	1.3699	1	943870			37930	6994	22160	22161	45837;45838	45837					0.04506971966452511
RKTNLTTFNPS	11	Unmodified	_RKTNLTTFNPS_					0	0	0		ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	ENSG00000177511|ENST00000324000|ST8SIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	639.8439331054688	2	639.843676	1277.6728	0.49445	0.00031637	-0.54536	-0.00034894	-0.050906	-3.2572E-05	639.8435381792899	98.305	0.56766	98.298	98.059	98.626	-0.0068207					286	65	7	0	0	0	0.43149	1	26307	26307		7.1017	1.3699	1	2194600			37931	6994	22160	22161	45839	45839					0.04506971966452511
RKTRKKMFI	9	Unmodified	_RKTRKKMFI_					0	0	0			REV__ENST00000374998.3_1_17:74865111-74909907:+|nuORF	REV__ENST00000374998.3_1_17:74865111-74909907:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.5645751953125	3	403.253382	1206.73832	-1.6787	-0.00067696	0.46563	0.00018777	-1.2131	-0.00048919	403.2538351619124	34.73	1.0373	34.806	34.496	35.533	0.075306					65	37	2	0	0	0	0.25817	1	6851	6851		6.6304	6.6304	1	1067000	+		37932	17418	22161	22162	45840	45840					0.14321714678476383
RKTWKTDL	8	Unmodified	_RKTWKTDL_					0	0	0		ENST00000413872.6_1_11:581516-587303:+|nuORF;ENST00000264555.9_1_11:581516-587303:+|nuORF	ENST00000413872.6_1_11:581516-587303:+|nuORF	ENST00000413872.6_1_11:581516-587303:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.313232421875	2	524.300916	1046.58728	0.17443	9.1454E-05	-0.23889	-0.00012525	-0.064456	-3.3795E-05	524.3007716921882	27.837	0.36304	27.837	27.673	28.036	0					20	12	2	0	0	0	0.42077	1	4755	4755		15.847	2.2323	1	69638			37933	9027	22162	22163	45841	45841					0.06584851571483341
RKTWKTDL	8	Unmodified	_RKTWKTDL_					0	0	0		ENST00000413872.6_1_11:581516-587303:+|nuORF;ENST00000264555.9_1_11:581516-587303:+|nuORF	ENST00000413872.6_1_11:581516-587303:+|nuORF	ENST00000413872.6_1_11:581516-587303:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	524.300916	1046.58728	0.17443	9.1454E-05	-0.23889	-0.00012525	-0.064456	-3.3795E-05	524.3007716921882	27.837	0.36304	27.837	27.673	28.036	0	0.039771	-5.2176E-05	NaN	15.847	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69638			37934	9027	22162	22163							0.06584851571483341
RKTWKTDL	8	Unmodified	_RKTWKTDL_					0	0	0		ENST00000413872.6_1_11:581516-587303:+|nuORF;ENST00000264555.9_1_11:581516-587303:+|nuORF	ENST00000413872.6_1_11:581516-587303:+|nuORF	ENST00000413872.6_1_11:581516-587303:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.300916	1046.58728	0.055702	2.9204E-05	-0.058646	-3.0748E-05	-0.0029449	-1.544E-06	524.3009210617979	27.769	0.3051	27.757	27.675	27.98	-0.01156	-0.039771	0.00013682	NaN	15.847	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65787			37935	9027	22162	22163							0.06584851571483341
RKVFAPLTL	9	Unmodified	_RKVFAPLTL_					0	0	0		nc|ENSG00000198585|Q96DE0-2|NUDT16;nc|ENSG00000198585|Q96DE0-4|NUDT16	nc|ENSG00000198585|Q96DE0-2|NUDT16	nc|ENSG00000198585|Q96DE0-2|NUDT16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2799072265625	2	522.831852	1043.64915	0.98066	0.00051272	-1.6358	-0.00085525	-0.65515	-0.00034253	522.8307956353484	50.521	0.82259	50.566	50.268	51.09	0.044891					81	29	4	0	0	0	0.16284	1	11761	11761		37.974	3.5723	1	2211300			37936	12903	22163	22164	45842	45842					0.12907202990618316
RKVFAPLTL	9	Unmodified	_RKVFAPLTL_					0	0	0		nc|ENSG00000198585|Q96DE0-2|NUDT16;nc|ENSG00000198585|Q96DE0-4|NUDT16	nc|ENSG00000198585|Q96DE0-2|NUDT16	nc|ENSG00000198585|Q96DE0-2|NUDT16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.831852	1043.64915	1.0134	0.00052983	-1.6355	-0.00085509	-0.62212	-0.00032526	522.8307975911779	50.644	0.87162	50.665	50.309	51.181	0.020695	0.050477	-1.0929E-05	NaN	37.974	84	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2528500			37937	12903	22163	22164							0.12907202990618316
RKVHLREEK	9	Unmodified	_RKVHLREEK_					0	0	0		ENSG00000133937|ENST00000238558|GSC	ENSG00000133937|ENST00000238558|GSC	ENSG00000133937|ENST00000238558|GSC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8561401367188	2	597.856921	1193.69929	0.069369	4.1473E-05	-0.93155	-0.00055693	-0.86218	-0.00051546	597.85632611877	99.533	0.26706	99.533	99.362	99.629	0					60	34	2	0	0	0	0.34681	1	26631	26631		1.8442	0.36234	1	91223			37938	3739	22164	22165	45843	45843					0.11018705648461946
RKVHLREEK	9	Unmodified	_RKVHLREEK_					0	0	0		ENSG00000133937|ENST00000238558|GSC	ENSG00000133937|ENST00000238558|GSC	ENSG00000133937|ENST00000238558|GSC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3590087890625	2	597.856921	1193.69929	0.069377	4.1478E-05	0.0094172	5.6302E-06	0.078794	4.7108E-05	597.8567403132992	99.93	0.23738	99.93	99.821	100.06	0					48	31	2	0	0	0	0.26168	1	26731	26731		1.8442	0	1	96404			37939	3739	22164	22165	45844	45844					0.11018705648461946
RKVHLREEK	9	Unmodified	_RKVHLREEK_					0	0	0		ENSG00000133937|ENST00000238558|GSC	ENSG00000133937|ENST00000238558|GSC	ENSG00000133937|ENST00000238558|GSC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8568725585938	2	597.856921	1193.69929	0.27878	0.00016667	-1.0714	-0.00064055	-0.79263	-0.00047388	597.856101886832	102.21	0.22308	102.22	102.14	102.36	0.016685					54	32	2	0	0	0	0.34681	1	27227	27227		1.8442	0.19162	1	96202			37940	3739	22164	22165	45845	45845					0.11018705648461946
RKVHLREEK	9	Unmodified	_RKVHLREEK_					0	0	0		ENSG00000133937|ENST00000238558|GSC	ENSG00000133937|ENST00000238558|GSC	ENSG00000133937|ENST00000238558|GSC	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	597.856921	1193.69929	0.069369	4.1473E-05	-0.93155	-0.00055693	-0.86218	-0.00051546	597.85632611877	99.533	0.26706	99.533	99.362	99.629	0	0.18028	-9.449E-05	NaN	1.8442	60	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91223			37941	3739	22164	22165							0.11018705648461946
RKVHLREEK	9	Unmodified	_RKVHLREEK_					0	0	0		ENSG00000133937|ENST00000238558|GSC	ENSG00000133937|ENST00000238558|GSC	ENSG00000133937|ENST00000238558|GSC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	597.856921	1193.69929	0.27991	0.00016734	-0.78304	-0.00046815	-0.50314	-0.0003008	597.8563321026559	99.121	0.18137	99.172	99.087	99.268	0.050888	-0.18028	8.308E-05	NaN	1.8442	33	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129120			37942	3739	22164	22165							0.11018705648461946
RKVNIPNL	8	Unmodified	_RKVNIPNL_					0	0	0			REV__ENSG00000115207|ENST00000264720|GTF3C2	REV__ENSG00000115207|ENST00000264720|GTF3C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.92694091796875	2	477.298176	952.581799	0.15742	7.5134E-05	-0.29597	-0.00014127	-0.13855	-6.6131E-05	477.29806209317036	27.054	0.31886	27.033	26.839	27.158	-0.021412					15	10	2	0	0	0	0.34353	1	4541	4541		4.756	0	1	32895	+		37943	14865	22165	22166	45846	45846					0.10361172779641947
RKVSAHTRAVK	11	Unmodified	_RKVSAHTRAVK_					0	0	0		ENSG00000168497|ENST00000304141|CAVIN2	ENSG00000168497|ENST00000304141|CAVIN2	ENSG00000168497|ENST00000304141|CAVIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.2577819824219	3	418.258072	1251.75239	0.085365	3.5705E-05	-0.43581	-0.00018228	-0.35045	-0.00014658	418.2577478105905	26.886	0.62184	26.865	26.62	27.242	-0.021412					57	21	4	0	0	0	0.33146	1	4511	4511		6.6235	2.5068	1	251480			37944	6279	22166	22167	45847	45847					0.1365808343111894
RKWEVPLL	8	Unmodified	_RKWEVPLL_					0	0	0		nc|ENSG00000291104|Q96KV6|BTN2A3P;ENST00000377662.6_1_6:26431111-26431840:+|nuORF	nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7577514648438	2	520.816202	1039.61785	0.15484	8.0643E-05	-0.39308	-0.00020472	-0.23824	-0.00012408	520.816020337632	60.233	0.73185	60.233	60.006	60.738	0					64	26	4	0	0	0	0.17536	1	14689	14689		63.563	6.0915	1	1852300			37945	13013	22167	22168	45848	45848					0.09962629956521596
RKWEVPLL	8	Unmodified	_RKWEVPLL_					0	0	0		nc|ENSG00000291104|Q96KV6|BTN2A3P;ENST00000377662.6_1_6:26431111-26431840:+|nuORF	nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.758056640625	2	520.816202	1039.61785	-0.19527	-0.0001017	0.042781	2.2281E-05	-0.15249	-7.9418E-05	520.816217809267	60.145	0.75929	60.24	59.99	60.75	0.095093					68	27	4	0	0	0	0.097623	1	14730	14730		77.984	6.8507	1	1976900			37946	13013	22167	22168	45849	45849					0.09962629956521596
RKWEVPLL	8	Unmodified	_RKWEVPLL_					0	0	0		nc|ENSG00000291104|Q96KV6|BTN2A3P;ENST00000377662.6_1_6:26431111-26431840:+|nuORF	nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7581176757812	2	520.816202	1039.61785	0.22668	0.00011806	-0.36317	-0.00018914	-0.13649	-7.1085E-05	520.8159878318401	60.198	0.65809	60.186	59.886	60.544	-0.011486					57	23	4	0	0	0	0.17536	1	14717	14717		63.563	6.0915	1	1815000			37947	13013	22167	22168	45850	45850					0.09962629956521596
RKWTTFLK	8	Unmodified	_RKWTTFLK_					0	0	0		ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	ENSG00000168758|ENST00000305476|SEMA4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8235473632812	2	540.321651	1078.62875	0.34577	0.00018683	0.011892	6.4253E-06	0.35766	0.00019325	540.3216403660025	42.726	0.78514	42.811	42.514	43.299	0.085197					78	28	5	0	0	0	0.1951	1	9356	9356		43.858	0	1	2241000			37948	6297	22168	22169	45851	45851					0.09258032330785682
RKYFLQRPA	9	Unmodified	_RKYFLQRPA_					0	0	0			REV__nc|ENSG00000136709|Q9C0J8-3|WDR33	REV__nc|ENSG00000136709|Q9C0J8-3|WDR33	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8449096679688	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.019	1	90.019	89.519	90.519	0								0	0	0	0.2575	1	23845	23845		3.9444	0.66309	1		+		37949	15823	22169	22170	45852	45852					0.09028222108099726
RKYHMIRRNKK	11	Unmodified	_RKYHMIRRNKK_					0	0	0		ENST00000461454.1_1_2:175252452-175260304:-|nuORF	ENST00000461454.1_1_2:175252452-175260304:-|nuORF	ENST00000461454.1_1_2:175252452-175260304:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8551940917969	3	510.636778	1528.8885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.02	1	113	112.5	113.5	-0.017303								0	0	0	0.38222	1	29386	29386		0.094841	0.011491	1				37950	10746	22170	22171	45853	45853					0.14521454670125422
RKYILQLF	8	Unmodified	_RKYILQLF_					0	0	0		ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.83203125	2	540.831852	1079.64915	0.46712	0.00025263	-0.49331	-0.0002668	-0.026195	-1.4167E-05	540.8325338539388	68.534	2.4612	68.606	68.24	70.701	0.071938					290	88	6	0	0	0	0.42758	1	17753	17753		13.508	0.46542	1	80195000			37951	7411	22171	22172	45854	45854					0.11251202990615639
RKYVGNQKQQ	10	Unmodified	_RKYVGNQKQQ_					0	0	0			REV__nc|ENSG00000090857|Q8NCN5-2|PDPR	REV__nc|ENSG00000090857|Q8NCN5-2|PDPR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.8432006835938	2	624.84401	1247.67347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.335	1	30.363	29.863	30.863	0.027946								0	0	0	0.37739	1	5540	5540		3.2813	0.78282	1		+		37952	14050	22172	22173	45855	45855					0.059538114061979286
RLAEAHAKVR	10	Unmodified	_RLAEAHAKVR_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8432006835938	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.83	1	113.81	113.31	114.31	-0.017303								0	0	0	0.37807	1	29576	29576		2.9952	0	1				37953	1910	22173	22174	45856	45856					0.10422436476960684
RLAEPHRISV	10	Unmodified	_RLAEPHRISV_					0	0	0			REV__nc|ENSG00000162804|Q8TER0-5|SNED1	REV__nc|ENSG00000162804|Q8TER0-5|SNED1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3432006835938	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.97	1	114.97	114.47	115.47	0								0	0	0	0.38189	1	29809	29809		1.1933	0	1		+		37954	17012	22174	22175	45857	45857					0.09147016757128767
RLAEPHRISV	10	Unmodified	_RLAEPHRISV_					0	0	0			REV__nc|ENSG00000162804|Q8TER0-5|SNED1	REV__nc|ENSG00000162804|Q8TER0-5|SNED1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3438110351562	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.56	1	115.56	115.06	116.06	0								0	0	0	0.38189	1	29943	29943		1.1933	0	1		+		37955	17012	22174	22175	45858	45858					0.09147016757128767
RLAEPHRISV	10	Unmodified	_RLAEPHRISV_					0	0	0			REV__nc|ENSG00000162804|Q8TER0-5|SNED1	REV__nc|ENSG00000162804|Q8TER0-5|SNED1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3445434570312	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.6	1	118.62	118.12	119.12	0.026253								0	0	0	0.38189	1	30707	30707		1.1933	0.23107	1		+		37956	17012	22174	22175	45859	45859					0.09147016757128767
RLAIALVI	8	Unmodified	_RLAIALVI_					0	0	0			REV__ENST00000430515.1_1_3:194476389-194476791:+|nuORF	REV__ENST00000430515.1_1_3:194476389-194476791:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8025207519531	2	434.802563	867.590573	-0.026614	-1.1572E-05	0.054482	2.3689E-05	0.027868	1.2117E-05	434.8024948603589	58.716	1.095	58.716	58.413	59.508	0					70	37	3	0	0	0	0.2157	1	14276	14276		40.449	0	1	1039000	+		37957	20947	22175	22176	45860	45860					0.15148146416129293
RLAIALVI	8	Unmodified	_RLAIALVI_					0	0	0			REV__ENST00000430515.1_1_3:194476389-194476791:+|nuORF	REV__ENST00000430515.1_1_3:194476389-194476791:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.8024597167969	2	434.802563	867.590573	0.048471	2.1075E-05	0.039631	1.7232E-05	0.088102	3.8307E-05	434.80245067066323	58.616	0.84457	58.708	58.418	59.262	0.091301					62	29	3	0	0	0	0.35375	1	14284	14284		24.674	0	1	906590	+		37958	20947	22175	22176	45861	45861					0.15148146416129293
RLCCFKQL	8	Unmodified	_RLCCFKQL_					0	0	0			REV__ENST00000377671.7_1_20:18278703-18278968:+|nuORF	REV__ENST00000377671.7_1_20:18278703-18278968:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7783203125	2	505.76734	1009.52013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.191	1	22.191	21.691	22.691	0								0	0	0	0.37078	1	3070	3070		5.2307	0	1		+		37959	20507	22176	22177	45862	45862					0.015747817644978568
RLCGLSEGP	9	Unmodified	_RLCGLSEGP_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.237060546875	2	466.236927	930.459301	0.2405	0.00011213	-0.061344	-2.8601E-05	0.17916	8.353E-05	466.2367776864219	20.479	1.4707	20.369	19.764	21.234	-0.11003					131	52	3	0	0	0	0.26612	1	2703	2703		13.906	0.86358	1	1586200			37960	7128	22177	22178	45863	45863					-0.008710320140835393
RLCGSLTLA	9	Unmodified	_RLCGSLTLA_					0	0	0			REV__ENST00000238112.7_1_2:9563777-9563939:+|nuORF	REV__ENST00000238112.7_1_2:9563777-9563939:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.25372314453125	2	467.262945	932.511337	-0.22728	-0.0001062	-0.40252	-0.00018808	-0.62981	-0.00029429	467.2626778668832	12.436	0.52335	12.34	12.236	12.76	-0.096607					23	17	3	0	0	0	0.26168	1	106	106		1.8442	1.0506	1	72088	+		37961	19485	22178	22179	45864	45864					0.0423813139966569
RLCGSLTLA	9	Unmodified	_RLCGSLTLA_					0	0	0			REV__ENST00000238112.7_1_2:9563777-9563939:+|nuORF	REV__ENST00000238112.7_1_2:9563777-9563939:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	467.262945	932.511337	-0.33642	-0.0001572	-0.32691	-0.00015276	-0.66333	-0.00030995	467.2627556449763	12.451	0.24986	12.451	12.332	12.582	0	0.048365	-2.9365E-05	NaN	1.8442	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69712	+		37962	19485	22178	22179							0.0423813139966569
RLDRTKKC	8	Unmodified	_RLDRTKKC_					0	0	0			REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3	REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.83221435546875	2	510.292568	1018.57058	0.095953	4.8964E-05	-0.036197	-1.8471E-05	0.059756	3.0493E-05	510.29238772297816	65.008	1.0395	65.008	64.621	65.66	0					79	37	3	0	0	0	0.33661	1	16121	16121		19.257	3.4098	1	2399600	+		37963	18247	22179	22180	45865	45865					0.06204027413878066
RLDSPQIR	8	Unmodified	_RLDSPQIR_					0	0	0		ENSG00000266028|ENST00000573034|SRGAP2	ENSG00000266028|ENST00000573034|SRGAP2	ENSG00000266028|ENST00000573034|SRGAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.673828125	2	492.78289	983.551228	0.2369	0.00011674	-0.95275	-0.0004695	-0.71585	-0.00035276	492.7823889931707	19.234	0.57024	19.118	18.863	19.433	-0.11592					39	19	3	0	0	0	0.34313	1	2122	2122		6.7232	0.96273	1	73760			37964	8674	22180	22181	45866	45866					0.058793943946284344
RLEEQLKEKVQ	11	Unmodified	_RLEEQLKEKVQ_					0	0	0			REV__nc|ENSG00000112763|Q7KYR7-6|BTN2A1	REV__nc|ENSG00000112763|Q7KYR7-6|BTN2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2685546875	3	467.268302	1398.78308	-0.11059	-5.1677E-05	0.31398	0.00014672	0.20339	9.5038E-05	467.2685184234812	41.991	0.5826	41.991	41.825	42.407	0					42	20	3	0	0	0	0.41517	1	9082	9082		9.2438	0	1	1237600	+		37965	14786	22181	22182	45867	45867					0.09963772234846147
RLEEQLKEKVQ	11	Unmodified	_RLEEQLKEKVQ_					0	0	0			REV__nc|ENSG00000112763|Q7KYR7-6|BTN2A1	REV__nc|ENSG00000112763|Q7KYR7-6|BTN2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.9369201660156	3	467.268302	1398.78308	0.13614	6.3614E-05	-0.065056	-3.0399E-05	0.071084	3.3216E-05	467.6022880831499	41.788	0.67419	41.878	41.738	42.412	0.090252					46	25	3	0	0	0	0.42246	1	9035	9035		8.2864	0	1	2114700	+		37966	14786	22181	22182	45868	45868					0.09963772234846147
RLEEQLKEKVQ	11	Unmodified	_RLEEQLKEKVQ_					0	0	0			REV__nc|ENSG00000112763|Q7KYR7-6|BTN2A1	REV__nc|ENSG00000112763|Q7KYR7-6|BTN2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.26837158203125	3	467.268302	1398.78308	0.50125	0.00023422	-0.18767	-8.7693E-05	0.31358	0.00014653	467.26845249377413	41.724	0.59695	41.82	41.7	42.297	0.096622					43	22	3	0	0	0	0.42246	1	9059	9059		8.2864	0.44039	1	2475100	+		37967	14786	22181	22182	45869	45869					0.09963772234846147
RLEFLWNNK	9	Unmodified	_RLEFLWNNK_					0	0	0		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.8789367675781	3	407.224257	1218.65094	-0.36715	-0.00014951	-0.57137	-0.00023267	-0.93852	-0.00038219	407.2238780778802	13.898	0.26134	13.832	13.716	13.977	-0.066068					19	8	3	0	0	0	0.25267	1	578	578		12.175	1.2758	1	123890			37968	5666	22182	22183	45870	45870					0.05036212008531038
RLEFRLRYF	9	Unmodified	_RLEFRLRYF_					0	0	0			REV__ENST00000507256.1_1_1:154407503-154427053:+|nuORF	REV__ENST00000507256.1_1_1:154407503-154427053:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.2501525878906	3	433.915535	1298.72478	-0.24834	-0.00010776	-0.25383	-0.00011014	-0.50217	-0.0002179	433.9154414675476	59.649	0.57719	59.744	59.354	59.932	0.095089					34	20	2	0	0	0	0.34085	1	14544	14544		2.7352	1.1429	1	305560	+		37969	16913	22183	22184	45871	45871					0.0873618017087665
RLEIHHRFKNF	11	Unmodified	_RLEIHHRFKNF_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2713317871094	3	499.612626	1495.81605	0.69803	0.00034874	0.69517	0.00034731	1.3932	0.00069606	499.61287510548283	48.562	0.40511	48.608	48.364	48.769	0.045483					26	14	2	0	0	0	0.33263	1	11070	11070		3.8459	0	1	317260			37970	998	22184	22185	45872	45872					0.08797443868206756
RLEIHHRFKNF	11	Unmodified	_RLEIHHRFKNF_					0	0	0		ENST00000477668.5_1_3:127323572-127337961:+|nuORF;ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	499.612626	1495.81605	0.5398	0.00026969	1.1163	0.0005577	1.6561	0.00082739	499.612954933639	48.433	0.35173	48.476	48.32	48.672	0.04332	-0.07422	0.0002683	NaN	3.8459	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337820			37971	998	22184	22185							0.08797443868206756
RLEKELRG	8	Unmodified	_RLEKELRG_					0	0	0			REV__nc|ENSG00000149823|Q9UID3-2|VPS51	REV__nc|ENSG00000149823|Q9UID3-2|VPS51	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7984619140625	2	500.79854	999.582528	0.49402	0.00024741	1.0907	0.00054623	1.5847	0.00079364	500.7984015564007	86.624	0.9163	86.618	86.108	87.024	-0.0060425					60	35	3	0	0	0	0.45645	1	22750	22750		3.5965	0	1	303270	+		37972	16485	22185	22186	45873	45873					0.08271967428709104
RLELPNERDL	10	Unmodified	_RLELPNERDL_					0	0	0			REV__nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	REV__nc|ENSG00000123329|Q9BRR9-5|ARHGAP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.5749206542969	3	418.89821	1253.6728	-0.16074	-6.7333E-05	-4.3324	-0.0018148	-4.4932	-0.0018822	418.8970177462022	25.485	0.44407	25.485	25.239	25.683	0					32	14	3	0	0	0	0.31889	1	4104	4104		3.3196	0	1	144080	+		37973	15184	22186	22187	45874	45874					0.05610971966461875
RLEPLCIPGVF	11	Unmodified	_RLEPLCIPGVF_					0	0	0			REV__nc|ENSG00000183378|Q7RTZ1|OVCH2	REV__nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3472900390625	2	622.347009	1242.67946	0.49695	0.00030928	0.23441	0.00014588	0.73136	0.00045516	622.3470765266429	85.83	2.7365	85.83	84.994	87.731	0					216	110	3	0	0	0	0.41411	1	22524	22524		9.3831	2.66	1	1062300	+		37974	18259	22187	22188	45875	45875					0.0678319359346915
RLEPLCIPGVF	11	Unmodified	_RLEPLCIPGVF_					0	0	0			REV__nc|ENSG00000183378|Q7RTZ1|OVCH2	REV__nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3473510742188	2	622.347009	1242.67946	0.37438	0.000233	0.26834	0.000167	0.64272	0.00039999	622.347035965394	85.773	3.0068	85.764	84.921	87.928	-0.0090103					276	128	4	0	0	0	0.41411	2	22770	22626;22770		9.3831	4.8543	1	1118300	+		37975	18259	22187	22188	45876;45877	45877					0.0678319359346915
RLEQKLREKML	11	Unmodified	_RLEQKLREKML_					0	0	0		nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2843933105469	3	481.953661	1442.83915	0.27998	0.00013494	-2.0777	-0.0010014	-1.7977	-0.00086642	481.9516784928897	90.533	0.13287	90.624	90.581	90.714	0.090668					12	9	2	0	0	0	0.33346	1	24002	24002		0.50596	0	1	150390			37976	12703	22188	22189	45878	45878					0.13544701870659992
RLERRFLRGSF	11	Unmodified	_RLERRFLRGSF_					0	0	0		ENST00000446403.1_3_6:33289775-33290721:-|nuORF	ENST00000446403.1_3_6:33289775-33290721:-|nuORF	ENST00000446403.1_3_6:33289775-33290721:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.9482421875	3	479.612626	1435.81605	0.62865	0.00030151	1.3967	0.00066988	2.0254	0.00097139	479.61334517049835	58.504	0.60936	58.49	58.25	58.86	-0.014267					47	21	3	0	0	0	0.46704	1	14188	14188		2.4348	0.18206	1	614060			37977	10595	22189	22190	45879	45879					0.1155744386819606
RLERRHKEPLQ	11	Unmodified	_RLERRHKEPLQ_					0	0	0			REV__ENST00000172229.7_1_17:47591456-47591825:+|nuORF	REV__ENST00000172229.7_1_17:47591456-47591825:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2741394042969	3	487.951419	1460.83243	0.25365	0.00012377	1.2296	0.00059998	1.4832	0.00072375	487.95228851035415	16.46	0.60752	16.397	16.066	16.674	-0.062534					38	20	3	0	0	0	0.46554	1	1295	1295		2.6312	1.1761	1	85769	+		37978	19387	22190	22191	45880	45880					0.12044525034320941
RLERRHKEPLQ	11	Unmodified	_RLERRHKEPLQ_					0	0	0			REV__ENST00000172229.7_1_17:47591456-47591825:+|nuORF	REV__ENST00000172229.7_1_17:47591456-47591825:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	487.951419	1460.83243	0.25365	0.00012377	1.2296	0.00059998	1.4832	0.00072375	487.95228851035415	16.46	0.60752	16.397	16.066	16.674	-0.062534	-0.010892	-0.00037787	NaN	2.6312	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85769	+		37979	19387	22190	22191							0.12044525034320941
RLEVDKGKE	9	Unmodified	_RLEVDKGKE_					0	0	0			REV__nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	REV__nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.80126953125	2	537.301113	1072.58767	0.018113	9.732E-06	-0.75877	-0.00040769	-0.74065	-0.00039795	537.3007057176998	13.553	0.66283	13.454	13.276	13.938	-0.099291					56	23	4	0	0	0	0.26612	1	547	547		13.906	0	1	868380	+		37980	23181	22191	22192	45881	45881					0.05428226500657729
RLFETEKR	8	Unmodified	_RLFETEKR_					0	0	0			REV__ENSG00000112079|ENST00000229812|STK38	REV__ENSG00000112079|ENST00000229812|STK38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8059692382812	2	539.803823	1077.59309	0.50565	0.00027295	2.185	0.0011795	2.6906	0.0014524	539.8050686293033	71.098	0.63414	71.098	70.768	71.402	0					52	22	3	0	0	0	0.28696	1	18048	18048		32.305	3.8186	1	947190	+		37981	14752	22192	22193	45882	45882					0.057399500831252226
RLFGRLCEL	9	Unmodified	_RLFGRLCEL_					0	0	0		nc|ENSG00000204209|Q9UER7-3|DAXX;nc|ENSG00000204209|Q9UER7-5|DAXX;nc|ENSG00000204209|Q9UER7-4|DAXX;nc|ENSG00000204209|Q9UER7-2|DAXX;ENSG00000204209|ENST00000374542|DAXX	nc|ENSG00000204209|Q9UER7-3|DAXX	nc|ENSG00000204209|Q9UER7-3|DAXX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8104858398438	2	553.810593	1105.60663	0.50337	0.00027877	-0.50808	-0.00028138	-0.0047056	-2.606E-06	553.8102886546607	36.153	1.0191	36.235	35.682	36.701	0.082355					74	36	3	0	0	0	0.2719	1	7331	7331		13.042	1.4022	1	1389100			37982	8205	22193	22194	45883	45883					0.05805484590700871
RLFIGGIPK	9	Unmodified	_RLFIGGIPK_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8188781738281	2	500.818744	999.622936	0.33928	0.00016992	-0.0092168	-4.6159E-06	0.33007	0.0001653	500.8186703561169	43.184	1.4691	43.184	42.786	44.255	0					155	53	4	0	0	0	0.012386	5	9462	9406;9462;9508;9556;9599		75.761	35.804	1	4664700			37983	5722	22194	22195	45884;45885;45886;45887;45888	45885					0.12310933819139791
RLFIGGIPK	9	Unmodified	_RLFIGGIPK_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8188781738281	2	500.818744	999.622936	0.43994	0.00022033	-0.086416	-4.3279E-05	0.35353	0.00017705	500.81861441237754	43.007	1.6353	43.093	42.731	44.366	0.085197					165	60	4	0	0	0	0.012386	4	9403	9403;9451;9494;9540		75.761	33.666	1	5004100			37984	5722	22194	22195	45889;45890;45891;45892	45889					0.12310933819139791
RLFIGGIPK	9	Unmodified	_RLFIGGIPK_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8186950683594	2	500.818744	999.622936	0.22481	0.00011259	0.081755	4.0944E-05	0.30656	0.00015353	500.8187061513698	43.02	1.9092	43.111	42.691	44.6	0.091362					170	70	4	0	0	0	0.0059482	4	9379	9379;9427;9486;9539		85.642	43.547	1	5229600			37985	5722	22194	22195	45893;45894;45895;45896	45893					0.12310933819139791
RLFIKKFKRRS	11	Unmodified	_RLFIKKFKRRS_					0	0	0		ENST00000380888.4_1_20:29523054-29523153:-|nuORF	ENST00000380888.4_1_20:29523054-29523153:-|nuORF	ENST00000380888.4_1_20:29523054-29523153:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.6505432128906	3	493.652533	1477.93577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.98	1	102.99	102.49	103.49	0.0082703								0	0	0	0.38194	1	27381	27381		0.40827	0.31342	1				37986	9988	22195	22196	45897	45897					0.21592057212774307
RLFLFQIQK	9	Unmodified	_RLFLFQIQK_					0	0	0		nc|ENSG00000291317|P0DTL6-2|ZFTRAF1;nc|ENSG00000291317|P0DTL6-1|ZFTRAF1;ENSG00000187954|ENST00000530374|ZFTRAF1	nc|ENSG00000291317|P0DTL6-2|ZFTRAF1	nc|ENSG00000291317|P0DTL6-2|ZFTRAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.2850341796875	2	596.863683	1191.71281	0.74348	0.00044375	-0.3515	-0.0002098	0.39198	0.00023396	596.8635247789016	55.575	0.45937	55.646	55.473	55.932	0.070889					31	16	3	0	0	0	0.20167	1	13285	13285		29.082	14.243	1	332810			37987	7721	22196	22197	45898	45898					0.12462563427698115
RLFLFQIQK	9	Unmodified	_RLFLFQIQK_					0	0	0		nc|ENSG00000291317|P0DTL6-2|ZFTRAF1;nc|ENSG00000291317|P0DTL6-1|ZFTRAF1;ENSG00000187954|ENST00000530374|ZFTRAF1	nc|ENSG00000291317|P0DTL6-2|ZFTRAF1	nc|ENSG00000291317|P0DTL6-2|ZFTRAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.2850952148438	2	596.863683	1191.71281	0.71271	0.00042539	-0.14072	-8.3988E-05	0.57199	0.0003414	596.8634997351608	55.858	0.37526	55.839	55.616	55.991	-0.019081					21	13	2	0	0	0	0.21389	1	13334	13334		25.399	9.5521	1	355640			37988	7721	22196	22197	45899	45899					0.12462563427698115
RLFLHYGRV	9	Unmodified	_RLFLHYGRV_					0	0	0		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8380737304688	2	580.838	1159.66145	-0.067398	-3.9147E-05	-0.04596	-2.6695E-05	-0.11336	-6.5843E-05	580.8379048746107	18.585	0.53291	18.527	18.313	18.846	-0.058174					40	18	3	0	0	0	0.33018	1	1960	1960		4.3292	0	1	315330			37989	7579	22197	22198	45900	45900					0.08800239453626091
RLFQPNLNMD	10	Unmodified	_RLFQPNLNMD_					0	0	0		ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.0326538085938	2	624.313697	1246.61284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.097	1	97.168	96.668	97.668	0.070465								0	0	0	0.38187	1	25975	25975		1.3295	0.36726	1				37990	756	22198	22199	45901	45901					-0.0006004196843605314
RLFTDTFLL	9	Unmodified	_RLFTDTFLL_					0	0	0			REV__ENSG00000100697|ENST00000343455|DICER1	REV__ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3189697265625	2	563.318774	1124.623	0.29656	0.00016706	-0.56467	-0.00031809	-0.2681	-0.00015103	563.3186055693232	70.669	2.585	70.669	70.35	72.935	0					212	93	6	0	0	0	0.15219	1	18247	18247		30.637	1.555	1	18686000	+		37991	14224	22199	22200	45902	45902					0.0656688902845417
RLFTDTFLL	9	Unmodified	_RLFTDTFLL_					0	0	0			REV__ENSG00000100697|ENST00000343455|DICER1	REV__ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.3189697265625	2	563.318774	1124.623	0.34648	0.00019518	-0.54122	-0.00030488	-0.19474	-0.0001097	563.3186168228666	70.747	1.6873	70.722	70.353	72.041	-0.024872					196	60	6	0	0	0	0.11461	1	18198	18198		36.127	5.4905	1	18137000	+		37992	14224	22199	22200	45903	45903					0.0656688902845417
RLFVGSIPK	9	Unmodified	_RLFVGSIPK_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;chr6:85641451-85641990|481|13.22|0.81|4.04|-|ENST00000677059|SYNCRIP,SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000125944|O43390-4|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000125944|O43390-3|HNRNPR	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.81683349609375	2	508.816202	1015.61785	-0.040993	-2.0858E-05	-0.17777	-9.0453E-05	-0.21876	-0.00011131	508.816769989177	39.023	2.7919	39.023	38.649	41.441	0					345	101	5	0	0	0	0.0019382	10	8178	8178;8223;8264;8313;8356;8403;8454;8505;8560;8606		110.79	46.832	1	80412000			37993	174	22200	22201	45904;45905;45906;45907;45908;45909;45910;45911;45912;45913	45904					0.11066629956519591
RLFVGSIPK	9	Unmodified	_RLFVGSIPK_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;chr6:85641451-85641990|481|13.22|0.81|4.04|-|ENST00000677059|SYNCRIP,SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000125944|O43390-4|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000125944|O43390-3|HNRNPR	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.81683349609375	2	508.816202	1015.61785	0.16828	8.5622E-05	-0.37652	-0.00019158	-0.20825	-0.00010596	508.8166446187364	38.97	2.8666	39.063	38.675	41.541	0.09267					339	104	6	0	0	0	0.0011116	9	8155	8155;8205;8248;8297;8349;8395;8447;8503;8771		121.35	57.385	1	78479000			37994	174	22200	22201	45914;45915;45916;45917;45918;45919;45920;45921;45922	45914					0.11066629956519591
RLFVGSIPK	9	Unmodified	_RLFVGSIPK_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;chr6:85641451-85641990|481|13.22|0.81|4.04|-|ENST00000677059|SYNCRIP,SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000125944|O43390-4|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000125944|O43390-3|HNRNPR	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8168029785156	2	508.816202	1015.61785	0.417	0.00021218	-0.59863	-0.00030459	-0.18163	-9.2418E-05	508.81652332140004	38.941	2.745	39.04	38.68	41.425	0.099407					321	99	6	0	0	0	0.0031966	10	8138	8138;8183;8224;8265;8310;8359;8406;8454;8504;8732		100.71	45.206	1	81092000			37995	174	22200	22201	45923;45924;45925;45926;45927;45928;45929;45930;45931;45932	45923					0.11066629956519591
RLGKDQRRVK	10	Unmodified	_RLGKDQRRVK_					0	0	0		ENST00000530749.5_1_11:110104088-110106836:-|nuORF	ENST00000530749.5_1_11:110104088-110106836:-|nuORF	ENST00000530749.5_1_11:110104088-110106836:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.2938537597656	3	419.261705	1254.76329	0.10768	4.5147E-05	1.3521	0.00056688	1.4598	0.00061203	419.26338206834714	91.944	0.69051	92.035	91.736	92.426	0.090675					67	45	2	0	0	0	0.32106	1	24357	24357		2.8433	0.93691	1	250620			37996	11619	22201	22202	45933	45933					0.14609485805385702
RLGLLAGFAFL	11	Unmodified	_RLGLLAGFAFL_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3432006835938	2	589.358234	1176.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.695	1	99.695	99.195	100.19	0								0	0	0	0.37109	1	26664	26664		3.5965	0.31518	1				37997	4254	22202	22203	45934	45934					0.12063161053424665
RLGLLAGFAFL	11	Unmodified	_RLGLLAGFAFL_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3434448242188	2	589.358234	1176.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.635	1	97.696	97.196	98.196	0.061516								0	0	0	0.37109	1	26127	26127		3.5965	0.31518	1				37998	4254	22202	22203	45935	45935					0.12063161053424665
RLGLLAGFAFL	11	Unmodified	_RLGLLAGFAFL_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3424072265625	2	589.358234	1176.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.623	1	96.617	96.117	97.117	-0.0055466								0	0	0	0.35686	1	25844	25844		6.7232	2.7788	1				37999	4254	22202	22203	45936	45936					0.12063161053424665
RLGLLAGFAFL	11	Unmodified	_RLGLLAGFAFL_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.34375	2	589.358234	1176.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.083	1	97.077	96.577	97.577	-0.0055466								0	0	0	0.35686	1	25981	25981		6.7232	1.8262	1				38000	4254	22202	22203	45937	45937					0.12063161053424665
RLGLLAGFAFL	11	Unmodified	_RLGLLAGFAFL_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.344482421875	2	589.358234	1176.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.434	1	97.428	96.928	97.928	-0.0055466								0	0	0	0.37109	1	26086	26086		3.5965	0.31518	1				38001	4254	22202	22203	45938	45938					0.12063161053424665
RLGLLPLL	8	Unmodified	_RLGLLPLL_					0	0	0		ENST00000472249.2_1_1:27632899-27633324:+|nuORF;ENST00000319394.7_1_1:27633135-27633324:+|nuORF	ENST00000472249.2_1_1:27632899-27633324:+|nuORF	ENST00000472249.2_1_1:27632899-27633324:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.8103942871094	2	447.810388	893.606223	0.16078	7.1999E-05	-0.14948	-6.6937E-05	0.011305	5.0624E-06	447.8102219957593	74.557	1.0481	74.609	74.353	75.401	0.052361					67	37	3	0	0	0	0.39956	1	19140	19140		19.439	0	1	878420			38002	9372	22203	22204	45939	45939					0.1551643293316829
RLGLLPLL	8	Unmodified	_RLGLLPLL_					0	0	0		ENST00000472249.2_1_1:27632899-27633324:+|nuORF;ENST00000319394.7_1_1:27633135-27633324:+|nuORF	ENST00000472249.2_1_1:27632899-27633324:+|nuORF	ENST00000472249.2_1_1:27632899-27633324:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.8102111816406	2	447.810388	893.606223	0.46617	0.00020876	-0.26181	-0.00011724	0.20436	9.1513E-05	447.8101396115343	74.693	0.84859	74.661	74.387	75.235	-0.031487					56	30	3	0	0	0	0.39956	1	19152	19152		19.439	0	1	940440			38003	9372	22203	22204	45940	45940					0.1551643293316829
RLGQSHKSSR	10	Unmodified	_RLGQSHKSSR_					0	0	0			REV__nc|ENSG00000152583|Q14515-2|SPARCL1	REV__nc|ENSG00000152583|Q14515-2|SPARCL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3211059570312	2	578.320703	1154.62685	0.38905	0.00022499	0.414	0.00023942	0.80304	0.00046442	578.320734328455	82.219	2.6522	82.219	81.302	83.954	0					240	103	3	0	0	0	0.37454	3	21648	21544;21596;21648		8.1555	4.897	1	835630	+		38004	16587	22204	22205	45941;45942;45943	45943					0.05572371574908175
RLGQSHKSSR	10	Unmodified	_RLGQSHKSSR_					0	0	0			REV__nc|ENSG00000152583|Q14515-2|SPARCL1	REV__nc|ENSG00000152583|Q14515-2|SPARCL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3209228515625	2	578.320703	1154.62685	0.31024	0.00017942	0.41252	0.00023857	0.72276	0.00041799	578.3207372612743	82.173	2.3333	82.242	81.461	83.795	0.068985					204	95	3	0	0	0	0.38027	2	21595	21538;21595		7.1017	4.897	1	1075100	+		38005	16587	22204	22205	45944;45945	45945					0.05572371574908175
RLGQSHKSSR	10	Unmodified	_RLGQSHKSSR_					0	0	0			REV__nc|ENSG00000152583|Q14515-2|SPARCL1	REV__nc|ENSG00000152583|Q14515-2|SPARCL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.8222045898438	2	578.320703	1154.62685	0.2841	0.0001643	-0.57135	-0.00033043	-0.28725	-0.00016612	578.3200919467528	80.523	1.7605	80.496	79.228	80.989	-0.026825					91	66	2	0	0	0	0.39612	1	20949	20949		4.1895	4.1895	1	310290	+		38006	16587	22204	22205	45946	45946					0.05572371574908175
RLGQSHKSSR	10	Unmodified	_RLGQSHKSSR_					0	0	0			REV__nc|ENSG00000152583|Q14515-2|SPARCL1	REV__nc|ENSG00000152583|Q14515-2|SPARCL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3204956054688	2	578.320703	1154.62685	0.38603	0.00022325	0.4927	0.00028494	0.87872	0.00050818	578.3207795532456	82.408	2.4147	82.387	81.478	83.892	-0.020584					239	99	3	0	0	0	0.36698	1	21636	21636		9.544	1.3884	1	1098200	+		38007	16587	22204	22205	45947	45947					0.05572371574908175
RLGRPDVRI	9	Unmodified	_RLGRPDVRI_					0	0	0			REV__nc|ENSG00000134900|P29144|TPP2	REV__nc|ENSG00000134900|P29144|TPP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.33349609375	2	541.333082	1080.65161	0.30816	0.00016682	0.23828	0.00012899	0.54644	0.00029581	541.3333993804603	17.904	0.4701	17.786	17.515	17.985	-0.11739					27	15	3	0	0	0	0.26068	1	1783	1783		3.2813	0	1	74049	+		38008	15708	22205	22206	45948	45948					0.11451051448261751
RLGRPDVRI	9	Unmodified	_RLGRPDVRI_					0	0	0			REV__nc|ENSG00000134900|P29144|TPP2	REV__nc|ENSG00000134900|P29144|TPP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.333082	1080.65161	0.40647	0.00022004	0.016587	8.9788E-06	0.42306	0.00022902	541.3331398253063	17.762	0.62358	17.762	17.368	17.991	0	-0.053143	-8.9436E-05	NaN	3.2813	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61213	+		38009	15708	22205	22206							0.11451051448261751
RLGRPDVRI	9	Unmodified	_RLGRPDVRI_					0	0	0			REV__nc|ENSG00000134900|P29144|TPP2	REV__nc|ENSG00000134900|P29144|TPP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.333082	1080.65161	0.39333	0.00021292	0.027634	1.4959E-05	0.42097	0.00022788	541.3332974419648	17.957	0.46646	17.896	17.618	18.084	-0.060429	0.081623	-7.7475E-05	NaN	3.2813	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63796	+		38010	15708	22205	22206							0.11451051448261751
RLHEETLL	8	Unmodified	_RLHEETLL_					0	0	0			REV__ENSG00000187033|ENST00000335556|SAMD7	REV__ENSG00000187033|ENST00000335556|SAMD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.3008728027344	2	505.785099	1009.55564	0.096447	4.8781E-05	1.7	0.00085985	1.7965	0.00090864	505.78532343220206	18.079	0.78202	18.02	17.59	18.372	-0.058174					64	24	4	0	0	0	0.34337	1	1753	1753		5.2307	0	1	175730	+		38011	18484	22206	22207	45949	45949					0.051248588175326404
RLHIQGTRTI	10	Unmodified	_RLHIQGTRTI_					0	0	0		nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8573608398438	2	597.856921	1193.69929	0.53282	0.00031855	-0.17984	-0.00010752	0.35298	0.00021103	597.8569574362817	90.616	0.40546	90.706	90.516	90.921	0.090675					73	31	3	0	0	0	0.40403	1	24041	24041		2.7352	0.89096	1	255130			38012	5812	22207	22208	45950	45950					0.11018705648461946
RLHLKKKKKL	10	Unmodified	_RLHLKKKKKL_					0	0	0		ENST00000344862.9_1_12:44119226-44119532:-|nuORF	ENST00000344862.9_1_12:44119226-44119532:-|nuORF	ENST00000344862.9_1_12:44119226-44119532:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.30517578125	3	431.306475	1290.89759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.623	1	68.623	68.123	69.123	0								0	0	0	0.38206	1	17299	17299		0.15932	0.15932	1				38013	9558	22208	22209	45951	45951					0.26378171298097186
RLHRLLYQL	9	Unmodified	_RLHRLLYQL_					0	0	0			REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF	REV__ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3700561523438	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.05	1	110.06	109.56	110.56	0.0099411								0	0	0	0.2672	1	28779	28779		0.52476	0	1		+		38014	18111	22209	22210	45952	45952					0.13292484033490837
RLHTVSLRLF	10	Unmodified	_RLHTVSLRLF_					0	0	0		ENST00000587642.5_1_17:73844624-73847864:-|nuORF	ENST00000587642.5_1_17:73844624-73847864:-|nuORF	ENST00000587642.5_1_17:73844624-73847864:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.209716796875	3	414.587418	1240.74043	0.0096055	3.9823E-06	-1.5285	-0.00063371	-1.5189	-0.00062972	414.58673279484634	25.815	0.41726	25.793	25.416	25.833	-0.022236					28	14	3	0	0	0	0.32082	1	4130	4130		3.3196	0.24738	1	172500			38015	12131	22210	22211	45953	45953					0.12968466687925684
RLIAQRYLL	9	Unmodified	_RLIAQRYLL_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4;PSMA4|p.I194Sfs*6|1|0.21|ENSG00000041357|chr15:78546646-78546647|-/AGCAA|frameshift_variant;ENSG00000041357|ENST00000044462|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8358764648438	2	573.361308	1144.70806	0.52318	0.00029997	0.11147	6.3914E-05	0.63465	0.00036388	573.3613213356113	46.726	0.51076	46.778	46.578	47.088	0.052574					26	18	2	0	0	0	0.1939	1	10579	10579		30.637	19.813	1	437690			38016	605	22211	22212	45954	45954					0.14149679284946615
RLIIVNIL	8	Unmodified	_RLIIVNIL_					0	0	0			REV__ENST00000465975.1_1_X:103031923-103041682:+|nuORF	REV__ENST00000465975.1_1_X:103031923-103041682:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.7686767578125	2	477.328945	952.643337	0.3405	0.00016253	-0.31049	-0.00014821	0.030014	1.4327E-05	477.32871050199776	72.171	0.38126	72.143	71.953	72.334	-0.027275					20	13	2	0	0	0	0.34337	1	18330	18330		2.3027	0	1	95775	+		38017	21280	22212	22213	45955	45955					0.16512104478943002
RLINTQAIFAK	11	Unmodified	_RLINTQAIFAK_					0	0	0		ENSG00000095059|ENST00000210060|DHPS;nc|ENSG00000095059|P49366-3|DHPS;ENST00000595844.5_1_19:12787852-12790977:-|nuORF	ENSG00000095059|ENST00000210060|DHPS	ENSG00000095059|ENST00000210060|DHPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.8829956054688	2	637.882604	1273.75066	0.48419	0.00030886	0.066668	4.2526E-05	0.55086	0.00035138	637.8825508189641	45.03	0.51989	45.03	44.771	45.291	0					44	18	3	0	0	0	0.0094061	1	10055	10055		70.929	43.705	1	580010			38018	1446	22213	22214	45956	45956					0.12473029622469767
RLINTQAIFAK	11	Unmodified	_RLINTQAIFAK_					0	0	0		ENSG00000095059|ENST00000210060|DHPS;nc|ENSG00000095059|P49366-3|DHPS;ENST00000595844.5_1_19:12787852-12790977:-|nuORF	ENSG00000095059|ENST00000210060|DHPS	ENSG00000095059|ENST00000210060|DHPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.8828125	2	637.882604	1273.75066	0.62442	0.0003983	-0.29679	-0.00018931	0.32763	0.00020899	637.8823929952162	44.838	0.55315	44.906	44.651	45.204	0.068573					49	19	4	0	0	0	0.0039637	1	9968	9968		82.445	45.37	1	804560			38019	1446	22213	22214	45957	45957					0.12473029622469767
RLINTQAIFAK	11	Unmodified	_RLINTQAIFAK_					0	0	0		ENSG00000095059|ENST00000210060|DHPS;nc|ENSG00000095059|P49366-3|DHPS;ENST00000595844.5_1_19:12787852-12790977:-|nuORF	ENSG00000095059|ENST00000210060|DHPS	ENSG00000095059|ENST00000210060|DHPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.8829345703125	2	637.882604	1273.75066	0.75768	0.00048331	-0.25967	-0.00016564	0.498	0.00031767	637.8823791081221	44.834	0.53707	44.909	44.697	45.234	0.075047					46	19	3	0	0	0	0.0060097	1	9954	9954		78.116	47.412	1	608040			38020	1446	22213	22214	45958	45958					0.12473029622469767
RLINTQAIFAK	11	Unmodified	_RLINTQAIFAK_					0	0	0		ENSG00000095059|ENST00000210060|DHPS;nc|ENSG00000095059|P49366-3|DHPS;ENST00000595844.5_1_19:12787852-12790977:-|nuORF	ENSG00000095059|ENST00000210060|DHPS	ENSG00000095059|ENST00000210060|DHPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.59075927734375	3	425.590828	1273.75066	0.14735	6.2712E-05	-0.26194	-0.00011148	-0.11458	-4.8765E-05	425.59072233226806	44.817	0.48654	44.892	44.697	45.183	0.075047					42	17	3	0	0	0	0.012242	1	9971	9971		54.259	36.687	1	633830			38021	1446	22213	22214	45959	45959					0.12473029622469767
RLINTQAIFAK	11	Unmodified	_RLINTQAIFAK_					0	0	0		ENSG00000095059|ENST00000210060|DHPS;nc|ENSG00000095059|P49366-3|DHPS;ENST00000595844.5_1_19:12787852-12790977:-|nuORF	ENSG00000095059|ENST00000210060|DHPS	ENSG00000095059|ENST00000210060|DHPS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	425.590828	1273.75066	0.090897	3.8685E-05	-0.28769	-0.00012244	-0.19679	-8.3754E-05	425.59076861282875	45.003	0.63124	45.003	44.71	45.341	0	0.074226	-0.00013072	NaN	54.259	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	498640			38022	1446	22213	22214							0.12473029622469767
RLINTQAIFAK	11	Unmodified	_RLINTQAIFAK_					0	0	0		ENSG00000095059|ENST00000210060|DHPS;nc|ENSG00000095059|P49366-3|DHPS;ENST00000595844.5_1_19:12787852-12790977:-|nuORF	ENSG00000095059|ENST00000210060|DHPS	ENSG00000095059|ENST00000210060|DHPS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	425.590828	1273.75066	-0.0066902	-2.8473E-06	-0.039518	-1.6818E-05	-0.046208	-1.9666E-05	425.59075894160117	44.823	0.46855	44.891	44.682	45.15	0.068573	-0.037781	0.00018614	NaN	54.259	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	445040			38023	1446	22213	22214							0.12473029622469767
RLIPRHLQL	9	Unmodified	_RLIPRHLQL_					0	0	0		HIST1H2AK|p.I79L|1|0.15|ENSG00000278677|chr6:27838105-27838105|T/G|missense_variant	HIST1H2AK|p.I79L|1|0.15|ENSG00000278677|chr6:27838105-27838105|T/G|missense_variant	HIST1H2AK|p.I79L|1|0.15|ENSG00000278677|chr6:27838105-27838105|T/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.366455078125	2	573.366924	1144.7193	0.33483	0.00019198	-0.13371	-7.6664E-05	0.20112	0.00011532	573.3667265513603	36.447	0.6447	36.447	36.2	36.844	0					52	22	3	0	0	0	0.017391	2	7399	7399;7449		68.081	0	1	555850			38024	12424	22214	22215	45960;45961	45960					0.15272501379081405
RLIPRHLQL	9	Unmodified	_RLIPRHLQL_					0	0	0		HIST1H2AK|p.I79L|1|0.15|ENSG00000278677|chr6:27838105-27838105|T/G|missense_variant	HIST1H2AK|p.I79L|1|0.15|ENSG00000278677|chr6:27838105-27838105|T/G|missense_variant	HIST1H2AK|p.I79L|1|0.15|ENSG00000278677|chr6:27838105-27838105|T/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.36669921875	2	573.366924	1144.7193	0.50397	0.00028896	-0.43608	-0.00025003	0.067887	3.8924E-05	573.3666478542673	36.294	0.66604	36.376	36.143	36.809	0.082359					52	23	3	0	0	0	0.051692	2	7357	7357;7408		52.268	0	1	548860			38025	12424	22214	22215	45962;45963	45962					0.15272501379081405
RLIPRHLQL	9	Unmodified	_RLIPRHLQL_					0	0	0		HIST1H2AK|p.I79L|1|0.15|ENSG00000278677|chr6:27838105-27838105|T/G|missense_variant	HIST1H2AK|p.I79L|1|0.15|ENSG00000278677|chr6:27838105-27838105|T/G|missense_variant	HIST1H2AK|p.I79L|1|0.15|ENSG00000278677|chr6:27838105-27838105|T/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.3671264648438	2	573.366924	1144.7193	0.66575	0.00038172	-0.62968	-0.00036104	0.036074	2.0684E-05	573.3666054894204	36.411	0.51146	36.497	36.272	36.783	0.08625					44	17	3	0	0	0	0.027237	1	7419	7419		61.357	0	1	469080			38026	12424	22214	22215	45964	45964					0.15272501379081405
RLKDPLTA	8	Unmodified	_RLKDPLTA_					0	0	0			REV__nc|ENSG00000183837|Q9UL41-2|PNMA3	REV__nc|ENSG00000183837|Q9UL41-2|PNMA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2766418457031	2	457.276909	912.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.786	1	12.687	12.187	13.187	-0.099291								0	0	0	0.37277	1	232	232		4.3292	0.38484	1		+		38027	18286	22215	22216	45965	45965					0.07949777651413115
RLKHEHIERRR	11	Unmodified	_RLKHEHIERRR_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.63421630859375	3	510.634313	1528.88111	0.33944	0.00017333	-0.10249	-5.2335E-05	0.23695	0.00012099	510.634159337073	94.475	1.5618	94.473	93.907	95.469	-0.0020142					458	133	5	0	0	0	0.48558	4	25156	25156;25237;25398;25435		0	0	1	1751300			38028	5431	22216	22217	45966;45967;45968;45969	45966					0.13782438394036944
RLKKLRLK	8	Unmodified	_RLKKLRLK_					0	0	0			REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	REV__nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.256103515625	2	527.88221	1053.74987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.231	1	12.134	11.634	12.634	-0.096607								0	0	0	0.38083	1	67	67		0	0	1		+		38029	17814	22217	22218	45970	45970					0.2251427976409559
RLKSLRSLP	9	Unmodified	_RLKSLRSLP_					0	0	0			REV__nc|ENSG00000168418|Q8TDN1-2|KCNG4	REV__nc|ENSG00000168418|Q8TDN1-2|KCNG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.3443603515625	2	535.345658	1068.67676	0.48708	0.00026075	-3.9341	-0.0021061	-3.447	-0.0018453	535.3445472173779	36.203	0.91119	36.285	35.874	36.785	0.082355					92	32	4	0	0	0	0.31763	1	7290	7290		6.2058	0	1	1012500	+		38030	17458	22218	22219	45971	45971					0.14517106250832512
RLKTQSELDRI	11	Unmodified	_RLKTQSELDRI_					0	0	0		nc|ENSG00000092036|Q9H6D7-2|HAUS4;nc|ENSG00000092036|Q9H6D7-3|HAUS4;nc|ENSG00000092036|Q9H6D7-4|HAUS4;ENSG00000092036|ENST00000541587|HAUS4;ENST00000554063.1_1_14:23416808-23417238:-|nuORF	nc|ENSG00000092036|Q9H6D7-2|HAUS4	nc|ENSG00000092036|Q9H6D7-2|HAUS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.27142333984375	3	453.596531	1357.76776	-0.1858	-8.428E-05	-0.44301	-0.00020095	-0.62881	-0.00028523	453.5962399353962	12.927	0.27497	12.927	12.783	13.058	0					14	9	2	0	0	0	0.33346	1	298	298		0.50596	0.051438	1	33476			38031	1415	22219	22220	45972	45972					0.10318905437634385
RLKTQSELDRI	11	Unmodified	_RLKTQSELDRI_					0	0	0		nc|ENSG00000092036|Q9H6D7-2|HAUS4;nc|ENSG00000092036|Q9H6D7-3|HAUS4;nc|ENSG00000092036|Q9H6D7-4|HAUS4;ENSG00000092036|ENST00000541587|HAUS4;ENST00000554063.1_1_14:23416808-23417238:-|nuORF	nc|ENSG00000092036|Q9H6D7-2|HAUS4	nc|ENSG00000092036|Q9H6D7-2|HAUS4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	453.596531	1357.76776	-0.14567	-6.6077E-05	-0.16763	-7.6038E-05	-0.31331	-0.00014212	453.5964143707215	12.953	0.25381	12.853	12.757	13.011	-0.099291	-0.036883	0.00019341	NaN	0.50596	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41610			38032	1415	22219	22220							0.10318905437634385
RLLFGNQI	8	Unmodified	_RLLFGNQI_					0	0	0			REV__nc|ENSG00000183475|Q9H672-2|ASB7	REV__nc|ENSG00000183475|Q9H672-2|ASB7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.74432373046875	2	480.784902	959.55525	0.050132	2.4103E-05	2.3148	0.0011129	2.365	0.001137	480.7859494125067	17.723	0.48483	17.606	17.355	17.84	-0.11739					23	16	2	0	0	0	0.344	1	1771	1771		2.5775	0	1	28300	+		38033	18264	22220	22221	45973	45973					0.0738548388833351
RLLFGNQI	8	Unmodified	_RLLFGNQI_					0	0	0			REV__nc|ENSG00000183475|Q9H672-2|ASB7	REV__nc|ENSG00000183475|Q9H672-2|ASB7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	480.784902	959.55525	0.1403	6.7455E-05	3.1247	0.0015023	3.265	0.0015698	480.7865267271679	17.645	0.40498	17.645	17.341	17.746	0	0.03026	0.00053838	NaN	2.5775	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33056	+		38034	18264	22220	22221							0.0738548388833351
RLLFKGKA	8	Unmodified	_RLLFKGKA_					0	0	0		ENSG00000102178|ENST00000369660|UBL4A	ENSG00000102178|ENST00000369660|UBL4A	ENSG00000102178|ENST00000369660|UBL4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2581481933594	2	466.805637	931.596721	-0.06386	-2.981E-05	1.267	0.00059147	1.2032	0.00056165	466.8060817358439	25.469	1.1383	25.438	25.181	26.319	-0.03141					55	40	2	0	0	0	0.34337	1	4115	4115		2.3027	0	1	162340			38035	1751	22221	22222	45974	45974					0.12818664647659261
RLLFKGKA	8	Unmodified	_RLLFKGKA_					0	0	0		ENSG00000102178|ENST00000369660|UBL4A	ENSG00000102178|ENST00000369660|UBL4A	ENSG00000102178|ENST00000369660|UBL4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	466.805637	931.596721	-0.10797	-5.0402E-05	1.1781	0.00054995	1.0701	0.00049955	466.80606702614966	25.431	0.58643	25.431	25.182	25.769	0	-0.0084779	-7.7887E-05	NaN	0.6015	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215360			38036	1751	22221	22222							0.12818664647659261
RLLFKGKA	8	Unmodified	_RLLFKGKA_					0	0	0		ENSG00000102178|ENST00000369660|UBL4A	ENSG00000102178|ENST00000369660|UBL4A	ENSG00000102178|ENST00000369660|UBL4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	466.805637	931.596721	-0.21868	-0.00010208	1.33	0.00062087	1.1114	0.00051879	466.8061921286934	25.507	1.0291	25.451	25.16	26.189	-0.055931	0.010676	6.395E-05	NaN	0.6015	59	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180690			38037	1751	22221	22222							0.12818664647659261
RLLKAIPLF	9	Unmodified	_RLLKAIPLF_					0	0	0		ENST00000473682.5_1_1:111740397-111743081:-|nuORF;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7979736328125	2	535.85787	1069.70119	0.55444	0.0002971	-0.069892	-3.7452E-05	0.48455	0.00025965	535.857718257941	55.666	0.44541	55.647	55.379	55.824	-0.019081					24	16	2	0	0	0	0.25811	1	13231	13231		5.2307	0	1	308560			38038	5616	22222	22223	45975	45975					0.1691236640435818
RLLKINPDWK	10	Unmodified	_RLLKINPDWK_					0	0	0		nc|ENSG00000197006|Q9H1A3-2|METTL9;ENSG00000197006|ENST00000358154|METTL9	nc|ENSG00000197006|Q9H1A3-2|METTL9	nc|ENSG00000197006|Q9H1A3-2|METTL9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8828125	2	641.885147	1281.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.57	1	101.6	101.1	102.1	0.027206								0	0	0	0.38166	1	27091	27091		1.4819	0	1				38039	7922	22223	22224	45976	45976					0.1261333348509197
RLLKYMFIRDY	11	Unmodified	_RLLKYMFIRDY_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2836608886719	3	506.614757	1516.82244	-0.083491	-4.2298E-05	-0.3471	-0.00017585	-0.43059	-0.00021814	506.6147124113377	13.482	0.13853	13.415	13.329	13.468	-0.067496					7	4	2	0	0	0	0.33347	1	428	428		0.45452	0	1	18348			38040	7845	22224	22225	45977	45977					0.08470200984720577
RLLLAVWLAAL	11	Unmodified	_RLLLAVWLAAL_					0	0	0		ENSG00000213906|ENST00000533293|LTB4R2	ENSG00000213906|ENST00000533293|LTB4R2	ENSG00000213906|ENST00000533293|LTB4R2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.20367431640625	3	413.604298	1237.79106	0.1076	4.4502E-05	0.50743	0.00020988	0.61503	0.00025438	413.93887111513965	29.869	0.40264	29.869	29.686	30.088	0					20	13	2	0	0	0	0.33326	1	5368	5368		1.4551	0.12547	1	77310			38041	8368	22225	22226	45978	45978					0.18167996012948606
RLLLAVWLAAL	11	Unmodified	_RLLLAVWLAAL_					0	0	0		ENSG00000213906|ENST00000533293|LTB4R2	ENSG00000213906|ENST00000533293|LTB4R2	ENSG00000213906|ENST00000533293|LTB4R2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2038879394531	3	413.604298	1237.79106	0.32132	0.0001329	0.38136	0.00015773	0.70268	0.00029063	413.9388344930728	29.742	0.43742	29.754	29.622	30.06	0.012266					20	14	2	0	0	0	0.33326	1	5358	5358		1.4551	0	1	117400			38042	8368	22225	22226	45979	45979					0.18167996012948606
RLLLLPTSF	9	Unmodified	_RLLLLPTSF_					0	0	0		ENST00000370223.7_2_10:102767131-102767407:+|nuORF	ENST00000370223.7_2_10:102767131-102767407:+|nuORF	ENST00000370223.7_2_10:102767131-102767407:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7615356445312	2	530.331685	1058.64882	0.64185	0.00034039	-0.18754	-9.9456E-05	0.45431	0.00024094	530.331469985876	42.083	0.57553	42.174	41.865	42.441	0.091362					32	19	3	0	0	0	0.24913	1	9146	9146		12.532	2.4576	1	362490			38043	9794	22226	22227	45980	45980					0.12183783270734239
RLLLNLLI	8	Unmodified	_RLLLNLLI_					0	0	0		ENST00000415177.6_1_6:135318627-135323914:-|nuORF	ENST00000415177.6_1_6:135318627-135323914:-|nuORF	ENST00000415177.6_1_6:135318627-135323914:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.3081359863281	2	484.33677	966.658987	0.30701	0.0001487	-0.079383	-3.8448E-05	0.22763	0.00011025	484.3366165040924	72.704	0.58165	72.757	72.51	73.091	0.053833					39	20	3	0	0	0	0.34247	1	18494	18494		8.5933	0	1	219750			38044	10306	22227	22228	45981	45981					0.1743239099597531
RLLLNLLI	8	Unmodified	_RLLLNLLI_					0	0	0		ENST00000415177.6_1_6:135318627-135323914:-|nuORF	ENST00000415177.6_1_6:135318627-135323914:-|nuORF	ENST00000415177.6_1_6:135318627-135323914:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	484.33677	966.658987	0.42973	0.00020813	-0.2372	-0.00011489	0.19253	9.3247E-05	484.3366095685714	72.806	0.50696	72.777	72.566	73.073	-0.029297	0.02807	-9.0232E-05	NaN	8.5933	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126120			38045	10306	22227	22228							0.1743239099597531
RLLLRRERE	9	Unmodified	_RLLLRRERE_					0	0	0			REV__ENSG00000178395|ENST00000366875|CCDC185	REV__ENSG00000178395|ENST00000366875|CCDC185	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.883056640625	2	620.88347	1239.75239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.445	1	31.486	30.986	31.986	0.040991								0	0	0	0.26734	1	5872	5872		0.45834	0	1		+		38046	18033	22228	22229	45982	45982					0.14210083431112253
RLLNRAPF	8	Unmodified	_RLLNRAPF_					0	0	0			REV__nc|ENSG00000166435|Q6P2D8-2|XRRA1	REV__nc|ENSG00000166435|Q6P2D8-2|XRRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7872619628906	2	493.798343	985.582134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.705	1	55.776	55.276	56.276	0.070885								0	0	0	0.35985	1	13319	13319		10.183	1.5901	1		+		38047	17320	22229	22230	45983	45983					0.08876592499507296
RLLRLNDPTGI	11	Unmodified	_RLLRLNDPTGI_					0	0	0		ENST00000585562.5_3_17:40277664-40277793:-|nuORF	ENST00000585562.5_3_17:40277664-40277793:-|nuORF	ENST00000585562.5_3_17:40277664-40277793:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3779907226562	2	634.377686	1266.74082	0.45844	0.00029082	-0.46841	-0.00029715	-0.0099702	-6.3248E-06	634.3777371171633	111.3	0.46751	111.31	110.9	111.37	0.01152					99	71	2	0	0	0	0.47649	2	28954	28954;28980		1.1933	0	1	342630			38048	12106	22230	22231	45984;45985	45984					0.11811841617145546
RLLWAVKRK	9	Unmodified	_RLLWAVKRK_					0	0	0			REV__nc|ENSG00000133731|P29218-3|IMPA1	REV__nc|ENSG00000133731|P29218-3|IMPA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.3851928710938	2	585.385117	1168.75568	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.6	1	112.62	112.12	113.12	0.0131								0	0	0	0.2672	1	29303	29303		0.52476	0	1		+		38049	22991	22231	22232	45986	45986					0.1780537827576154
RLMKNREAAKE	11	Unmodified	_RLMKNREAAKE_					0	0	0		nc|ENSG00000095794|Q03060-11|CREM;nc|ENSG00000095794|Q03060-2|CREM;nc|ENSG00000095794|Q03060|CREM;nc|ENSG00000095794|Q03060-15|CREM;nc|ENSG00000095794|Q03060-16|CREM;nc|ENSG00000095794|Q03060-20|CREM;nc|ENSG00000095794|Q03060-22|CREM;nc|ENSG00000095794|Q03060-12|CREM;nc|ENSG00000095794|Q03060-7|CREM;nc|ENSG00000095794|Q03060-17|CREM;nc|ENSG00000095794|Q03060-27|CREM;nc|ENSG00000095794|Q03060-30|CREM;nc|ENSG00000095794|Q03060-13|CREM;nc|ENSG00000095794|Q03060-14|CREM;nc|ENSG00000095794|Q03060-19|CREM;nc|ENSG00000095794|Q03060-28|CREM;nc|ENSG00000095794|Q03060-29|CREM;nc|ENSG00000095794|Q03060-10|CREM;nc|ENSG00000095794|Q03060-1|CREM	nc|ENSG00000095794|Q03060-11|CREM	nc|ENSG00000095794|Q03060-11|CREM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.7897033691406	3	449.250477	1344.7296	-0.072033	-3.2361E-05	0.03769	1.6932E-05	-0.034343	-1.5429E-05	449.5846790716279	15.048	0.30825	14.984	14.82	15.128	-0.064414					14	10	2	0	0	0	0.33334	1	901	901		1.2148	0	1	64565			38050	12608	22232	22233	45987	45987					0.07102696251331508
RLMTLFMRY	9	Unmodified	_RLMTLFMRY_					0	0	0		ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-5|MEI1;nc|ENSG00000167077|Q5TIA1-2|MEI1;nc|ENSG00000167077|Q5TIA1-3|MEI1	ENSG00000167077|ENST00000401548|MEI1	ENSG00000167077|ENST00000401548|MEI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2366943359375	3	410.887711	1229.6413	-0.045347	-1.8633E-05	0.06571	2.6999E-05	0.020362	8.3667E-06	410.88767184874354	33.525	0.60903	33.592	33.358	33.967	0.066704					35	21	2	0	0	0	0.26117	1	6600	6600		3.3196	1.99	1	106650			38051	6144	22233	22234	45988	45988					0.03566984407166274
RLMTLFMRY	9	Unmodified	_RLMTLFMRY_					0	0	0		ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-5|MEI1;nc|ENSG00000167077|Q5TIA1-2|MEI1;nc|ENSG00000167077|Q5TIA1-3|MEI1	ENSG00000167077|ENST00000401548|MEI1	ENSG00000167077|ENST00000401548|MEI1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	410.887711	1229.6413	0.49349	0.00020277	0.054823	2.2526E-05	0.54831	0.00022529	410.88760140118984	33.515	0.49421	33.582	33.38	33.875	0.06636	-0.0052	-6.6159E-06	NaN	3.3196	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100350			38052	6144	22233	22234							0.03566984407166274
RLNILDPIY	9	Unmodified	_RLNILDPIY_					0	0	0			REV__ENST00000374423.7_1_2:207169553-207169727:+|nuORF	REV__ENST00000374423.7_1_2:207169553-207169727:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.8240966796875	2	558.824224	1115.63389	0.28694	0.00016035	-0.43349	-0.00024225	-0.14655	-8.1897E-05	558.8237866576002	52.179	1.0458	52.179	51.914	52.96	0					77	37	3	0	0	0	0.1939	1	12278	12278		30.637	0	1	1270400	+		38053	20460	22234	22235	45989	45989					0.08070291402759722
RLNPEERI	8	Unmodified	_RLNPEERI_					0	0	0		ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2412109375	2	513.788173	1025.56179	0.12315	6.3271E-05	0.026818	1.3779E-05	0.14996	7.705E-05	514.2895236132186	22.661	0.42543	22.661	22.42	22.845	0					18	14	2	0	0	0	0.34337	1	3262	3262		5.2307	0	1	41861			38054	3756	22235	22236	45990	45990					0.05003377049047231
RLNPEERI	8	Unmodified	_RLNPEERI_					0	0	0		ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	513.788173	1025.56179	0.10185	5.2328E-05	-1.1274	-0.00057926	-1.0256	-0.00052693	513.7885984271734	22.544	0.080589	22.456	22.403	22.484	-0.087608	-0.17166	-0.0012035	NaN	5.2307	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17387			38055	3756	22235	22236							0.05003377049047231
RLNPEERI	8	Unmodified	_RLNPEERI_					0	0	0		ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	ENSG00000134115|ENST00000446702|CNTN6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	513.788173	1025.56179	0.061356	3.1524E-05	0.085376	4.3865E-05	0.14673	7.5389E-05	513.788640888952	22.811	0.31999	22.766	22.553	22.873	-0.044867	0.13853	4.28E-05	NaN	5.2307	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34468			38056	3756	22235	22236							0.05003377049047231
RLPAALLLL	9	Unmodified	_RLPAALLLL_					0	0	0			REV__ENST00000603606.1_1_14:64061078-64061531:-|nuORF	REV__ENST00000603606.1_1_14:64061078-64061531:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.336669921875	2	490.33677	978.658987	0.36106	0.00017704	-0.085912	-4.2126E-05	0.27515	0.00013492	490.337302990868	74.977	4.6922	75.03	74.671	79.363	0.052368					322	176	5	0	0	0	0.17787	1	19404	19404		26.884	0	1	48233000	+		38057	22650	22236	22237	45991	45991					0.16880390996004735
RLPASLFIS	9	Unmodified	_RLPASLFIS_					0	0	0			REV__nc|ENSG00000166317|Q9H987-2|SYNPO2L	REV__nc|ENSG00000166317|Q9H987-2|SYNPO2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.253662109375	2	502.300384	1002.58622	0.17091	8.5847E-05	0.70777	0.00035551	0.87867	0.00044136	502.30077470473225	52.347	0.35408	52.346	52.141	52.495	-0.00081253					22	12	3	0	0	0	0.24688	1	12261	12261		10.074	4.3421	1	189180	+		38058	17307	22237	22238	45992	45992					0.08502637202559526
RLPAWGRRA	9	Unmodified	_RLPAWGRRA_					0	0	0			REV__ENST00000373109.6_1_10:73848414-73848504:-|nuORF	REV__ENST00000373109.6_1_10:73848414-73848504:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2991943359375	2	541.820141	1081.62573	0.57657	0.0003124	-1.0702	-0.00057987	-0.49367	-0.00026748	541.8194134400501	37.769	0.6001	37.86	37.609	38.209	0.090881					44	21	3	0	0	0	0.25323	1	7828	7828		10.074	0	1	542530	+		38059	20428	22238	22239	45993	45993					0.08818201996655262
RLPDGLNSKI	10	Unmodified	_RLPDGLNSKI_					0	0	0		ENST00000367097.7_1_6:158733977-158734154:+|nuORF	ENST00000367097.7_1_6:158733977-158734154:+|nuORF	ENST00000367097.7_1_6:158733977-158734154:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.8124389648438	2	556.824755	1111.63496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.892	1	14.828	14.328	15.328	-0.064413								0	0	0	0.37925	1	861	861		2.4985	0.19575	1				38060	9723	22239	22240	45994	45994					0.0836050577165679
RLPEFQRT	8	Unmodified	_RLPEFQRT_					0	0	0		ENST00000533263.1_2_11:57282631-57283146:-|nuORF	ENST00000533263.1_2_11:57282631-57283146:-|nuORF	ENST00000533263.1_2_11:57282631-57283146:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3136596679688	2	523.790715	1045.56688	0.25411	0.0001331	-0.30855	-0.00016162	-0.054447	-2.8519E-05	523.790488162444	27.593	0.74692	27.593	27.207	27.954	0					26	25	2	0	0	0	0.34039	1	4652	4652		15.847	5.0233	1	170990			38061	11646	22240	22241	45995	45995					0.04591680911653384
RLPKPRYR	8	Unmodified	_RLPKPRYR_					0	0	0		nc|ENSG00000160050|Q9BUN5-3|CCDC28B	nc|ENSG00000160050|Q9BUN5-3|CCDC28B	nc|ENSG00000160050|Q9BUN5-3|CCDC28B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3126831054688	2	543.338167	1084.66178	0.11615	6.3106E-05	-1.2637	-0.00068661	-1.1476	-0.00062351	543.3376158674422	12.215	0.13773	12.215	12.135	12.273	0					12	5	3	0	0	0	0.34437	1	46	46		0.69038	0	1	55305			38062	12788	22241	22242	45996	45996					0.12283659173476735
RLPLRLFLI	9	Unmodified	_RLPLRLFLI_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8846435546875	2	570.884419	1139.75428	0.30262	0.00017276	0.56707	0.00032373	0.86969	0.00049649	570.8847353801458	71.718	0.9659	71.718	71.462	72.428	0					63	34	3	0	0	0	0.21303	1	18299	18299		21.747	8.2388	1	436680			38063	1476	22242	22243	45997	45997					0.1899974418702186
RLPLRLFLI	9	Unmodified	_RLPLRLFLI_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8844604492188	2	570.884419	1139.75428	0.40688	0.00023228	0.34268	0.00019563	0.74956	0.00042791	570.8845435374363	71.725	0.81747	71.781	71.537	72.355	0.056572					68	29	3	0	0	0	0.1669	2	18270	18220;18270		28.487	6.7402	1	506210			38064	1476	22242	22243	45998;45999	45999					0.1899974418702186
RLPLTAQDVW	10	Unmodified	_RLPLTAQDVW_					0	0	0			REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|36|2|anti-sense	REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|36|2|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.83154296875	2	599.83258	1197.65061	0.073279	4.3955E-05	-0.47154	-0.00028285	-0.39826	-0.00023889	599.8314529552033	112.34	0.39732	112.34	112.24	112.64	0					62	51	2	0	0	0	0.41085	1	29209	29209		1.4819	0	1	48256	+		38065	22694	22243	22244	46000	46000					0.05968792288695113
RLPLTAQDVW	10	Unmodified	_RLPLTAQDVW_					0	0	0			REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|36|2|anti-sense	REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|36|2|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.77587890625	2	599.83258	1197.65061	0.28485	0.00017086	-1.0049	-0.00060276	-0.72002	-0.00043189	599.8312480405285	112.31	0.37938	112.3	112.16	112.54	-0.015617					70	44	2	0	0	0	0.41085	3	29185	29185;29208;29254		1.4819	0	1	45440	+		38066	22694	22243	22244	46001;46002;46003	46001					0.05968792288695113
RLPLTAQDVW	10	Unmodified	_RLPLTAQDVW_					0	0	0			REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|36|2|anti-sense	REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|36|2|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.8316040039062	2	599.83258	1197.65061	0.32735	0.00019635	-0.98912	-0.00059331	-0.66177	-0.00039695	599.8311668790951	112.3	0.35699	112.31	112.21	112.56	0.0131					56	43	2	0	0	0	0.41085	3	29233	29233;29279;29282		1.4819	0	1	58569	+		38067	22694	22243	22244	46004;46005;46006	46004					0.05968792288695113
RLPLTAQDVW	10	Unmodified	_RLPLTAQDVW_					0	0	0			REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|36|2|anti-sense	REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|36|2|anti-sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	599.83258	1197.65061	0.073279	4.3955E-05	-0.47154	-0.00028285	-0.39826	-0.00023889	599.8314529552033	112.34	0.39732	112.34	112.24	112.64	0	0.02615	0.00045847	NaN	1.4819	62	51	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48256	+		38068	22694	22243	22244							0.05968792288695113
RLPLTAQDVW	10	Unmodified	_RLPLTAQDVW_					0	0	0			REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|36|2|anti-sense	REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|36|2|anti-sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	599.83258	1197.65061	0.28485	0.00017086	-1.0049	-0.00060276	-0.72002	-0.00043189	599.8312480405285	112.31	0.37938	112.3	112.16	112.54	-0.015617	-0.017785	-0.00018136	NaN	1.4819	70	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45440	+		38069	22694	22243	22244							0.05968792288695113
RLPLTAQDVW	10	Unmodified	_RLPLTAQDVW_					0	0	0			REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|36|2|anti-sense	REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|36|2|anti-sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	599.83258	1197.65061	0.32735	0.00019635	-0.98912	-0.00059331	-0.66177	-0.00039695	599.8311668790951	112.3	0.35699	112.31	112.21	112.56	0.0131	-0.0083659	-0.00016245	NaN	1.4819	56	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58569	+		38070	22694	22243	22244							0.05968792288695113
RLPREPIS	8	Unmodified	_RLPREPIS_					0	0	0			REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF	REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2878723144531	2	484.287808	966.561064	0.21662	0.00010491	-0.19608	-9.4958E-05	0.02054	9.9472E-06	484.2877319147779	21.717	0.50921	21.717	21.431	21.94	0					44	18	3	0	0	0	0.4354	1	2920	2920		10.824	0	1	254680	+		38071	16982	22244	22245	46007	46007					0.07644582399984756
RLPREPIS	8	Unmodified	_RLPREPIS_					0	0	0			REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF	REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.287841796875	2	484.287808	966.561064	0.23745	0.00011499	-0.23831	-0.00011541	-0.00086453	-4.1868E-07	484.28781080180954	21.728	0.63299	21.679	21.405	22.038	-0.049377					44	22	3	0	0	0	0.42371	1	2926	2926		14.838	0	1	218890	+		38072	16982	22244	22245	46008	46008					0.07644582399984756
RLPRRRRLEWV	11	Unmodified	_RLPRRRRLEWV_					0	0	0			REV__ENST00000376771.8_1_X:48398216-48399763:+|nuORF	REV__ENST00000376771.8_1_X:48398216-48399763:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9854125976562	3	512.983054	1535.92733	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.514	1	93.6	93.1	94.1	0.08667								0	0	0	0.38222	1	24908	24908		0.094841	0.011491	1		+		38073	20494	22245	22246	46009	46009					0.18080503296164352
RLPRRRRLEWV	11	Unmodified	_RLPRRRRLEWV_					0	0	0			REV__ENST00000376771.8_1_X:48398216-48399763:+|nuORF	REV__ENST00000376771.8_1_X:48398216-48399763:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7893676757812	3	512.983054	1535.92733	0.25764	0.00013216	4.1321	0.0021197	4.3897	0.0022518	512.985367055811	91.761	0.085526	91.851	91.776	91.861	0.090668					5	4	2	0	0	0	0.33351	1	24351	24351		0.094841	0.011491	1	66799	+		38074	20494	22245	22246	46010	46010					0.18080503296164352
RLPSETYFF	9	Unmodified	_RLPSETYFF_					0	0	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.2930297851562	2	580.292756	1158.57096	0.20183	0.00011712	0.18125	0.00010518	0.38308	0.0002223	580.2928194700412	61.918	1.1843	61.918	61.623	62.807	0					105	43	4	0	0	0	0.041175	2	15261	15211;15261		56.177	18.203	1	1779700			38075	8635	22246	22247	46011;46012	46012					-0.001982743853204738
RLPSETYFF	9	Unmodified	_RLPSETYFF_					0	0	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.2930297851562	2	580.292756	1158.57096	-0.0655	-3.8009E-05	0.45128	0.00026188	0.38578	0.00022387	580.2929302282993	61.812	1.1737	61.909	61.592	62.765	0.096989					105	42	4	0	0	0	0.023967	2	15225	15177;15225		62.573	26.446	1	1968200			38076	8635	22246	22247	46013;46014	46014					-0.001982743853204738
RLPSETYFF	9	Unmodified	_RLPSETYFF_					0	0	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2928466796875	2	580.292756	1158.57096	0.074906	4.3467E-05	0.3287	0.00019074	0.40361	0.00023421	580.2928592833996	61.938	1.1722	61.929	61.582	62.755	-0.0085564					107	42	4	0	0	0	0.023967	2	15248	15196;15248		62.573	26.446	1	1919200			38077	8635	22246	22247	46015;46016	46016					-0.001982743853204738
RLPSVPFETI	10	Unmodified	_RLPSVPFETI_					0	0	0		ENSG00000123908|ENST00000220592|AGO2;nc|ENSG00000123908|Q9UKV8-2|AGO2	ENSG00000123908|ENST00000220592|AGO2	ENSG00000123908|ENST00000220592|AGO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.2890014648438	2	579.829506	1157.64446	0.44038	0.00025535	2.9881	0.0017326	3.4285	0.001988	580.3338960155264	64.722	0.53592	64.815	64.554	65.09	0.092888					29	19	2	0	0	0	0.31473	1	16086	16086		13.615	4.2674	1	233310			38078	3125	22247	22248	46017	46017					0.07194274057178518
RLQCPHWR	8	Unmodified	_RLQCPHWR_					0	0	0			REV__ENST00000481291.1_1_10:118458052-118460585:-|nuORF	REV__ENST00000481291.1_1_10:118458052-118460585:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3355712890625	2	548.285077	1094.5556	0.4467	0.00024492	-1.1398	-0.00062493	-0.69309	-0.00038001	548.2843309029274	22.146	0.81037	22.045	21.888	22.698	-0.10034					41	29	2	0	0	0	0.34337	1	3205	3205		5.2307	0	1	140110	+		38079	21488	22248	22249	46018	46018					0.012105803365102474
RLQFLPAL	8	Unmodified	_RLQFLPAL_					0	0	0			REV__ENSG00000176020|ENST00000320431|AMIGO3	REV__ENSG00000176020|ENST00000320431|AMIGO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2972106933594	2	479.297645	956.580737	0.10507	5.0361E-05	0.54125	0.00025942	0.64632	0.00030978	479.29767446037033	31.716	0.42404	31.716	31.476	31.9	0					19	14	2	0	0	0	0.35375	1	5987	5987		24.674	1.5255	1	221470	+		38080	17916	22249	22250	46019	46019					0.10070958410744879
RLQFLPAL	8	Unmodified	_RLQFLPAL_					0	0	0			REV__ENSG00000176020|ENST00000320431|AMIGO3	REV__ENSG00000176020|ENST00000320431|AMIGO3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	479.297645	956.580737	0.10507	5.0361E-05	0.54125	0.00025942	0.64632	0.00030978	479.29767446037033	31.716	0.42404	31.716	31.476	31.9	0	0.013028	-2.5596E-06	NaN	24.674	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221470	+		38081	17916	22249	22250							0.10070958410744879
RLQFLPAL	8	Unmodified	_RLQFLPAL_					0	0	0			REV__ENSG00000176020|ENST00000320431|AMIGO3	REV__ENSG00000176020|ENST00000320431|AMIGO3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.297645	956.580737	0.26401	0.00012654	0.5449	0.00026117	0.80891	0.00038771	479.29785361210367	31.649	0.44347	31.69	31.447	31.89	0.040991	-0.013028	9.366E-07	NaN	24.674	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333790	+		38082	17916	22249	22250							0.10070958410744879
RLQKLWVG	8	Unmodified	_RLQKLWVG_					0	0	0		nc|ENSG00000144320|Q9C0E8-2|LNPK;ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.3058166503906	2	500.308544	998.602535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.374	1	12.374	11.874	12.874	0								0	0	0	0.38004	1	107	107		0.69038	0	1				38083	4575	22250	22251	46020	46020					0.10317763159321203
RLQKRLASSVL	11	Unmodified	_RLQKRLASSVL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000580333.1_1_17:37356597-37358721:+|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2696838378906	3	424.269978	1269.7881	0.017566	7.4529E-06	-0.24262	-0.00010294	-0.22505	-9.5483E-05	424.2697917746733	28.906	1.1927	28.906	28.64	29.833	0					114	42	4	0	0	0	0.36161	1	5092	5092		16.275	6.5103	1	1277400			38084	2172	22251	22252	46021	46021					0.1640012088810181
RLQKRLASSVL	11	Unmodified	_RLQKRLASSVL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000580333.1_1_17:37356597-37358721:+|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.26971435546875	3	424.269978	1269.7881	-0.11714	-4.9699E-05	-0.091297	-3.8735E-05	-0.20844	-8.8434E-05	424.2698284124381	28.914	0.82559	28.91	28.658	29.484	-0.0042572					89	28	4	0	0	0	0.36722	2	5086	5086;5136		15.538	6.2947	1	1418300			38085	2172	22251	22252	46022;46023	46022					0.1640012088810181
RLQKRLASSVL	11	Unmodified	_RLQKRLASSVL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000580333.1_1_17:37356597-37358721:+|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	635.9014892578125	2	635.901328	1269.7881	0.49143	0.0003125	0.020413	1.2981E-05	0.51185	0.00032549	635.9013758824741	28.91	0.45364	28.906	28.72	29.174	-0.0042572					23	15	2	0	0	0	0.44598	1	5098	5098		6.1918	1.663	1	167440			38086	2172	22251	22252	46024	46024					0.1640012088810181
RLQKRLASSVL	11	Unmodified	_RLQKRLASSVL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000580333.1_1_17:37356597-37358721:+|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.26983642578125	3	424.269978	1269.7881	-0.1698	-7.204E-05	-0.11909	-5.0526E-05	-0.28889	-0.00012257	424.2698892612522	29.012	1.0746	29.026	28.699	29.773	0.013474					99	37	4	0	0	0	0.41517	1	5160	5160		9.2438	9.2438	1	1427100			38087	2172	22251	22252	46025	46025					0.1640012088810181
RLQLPALC	8	Unmodified	_RLQLPALC_					0	0	0			REV__ENST00000433510.2_1_17:46713640-46724167:-|nuORF	REV__ENST00000433510.2_1_17:46713640-46724167:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.276611328125	2	457.26803	912.521507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.76	1	12.76	12.26	13.26	0								0	0	0	0.37992	1	222	222		0.79363	0	1		+		38088	20969	22252	22253	46026	46026					0.061747391248900385
RLQLRLHLY	9	Unmodified	_RLQLRLHLY_					0	0	0		ENSG00000236398|ENST00000446620|TAS2R39	ENSG00000236398|ENST00000446620|TAS2R39	ENSG00000236398|ENST00000446620|TAS2R39	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3704833984375	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.65	1	111.63	111.13	112.13	-0.013939								0	0	0	0.26704	1	29044	29044		0.6015	0.076735	1				38089	8502	22253	22254	46027	46027					0.13292484033490837
RLQLRLHLY	9	Unmodified	_RLQLRLHLY_					0	0	0		ENSG00000236398|ENST00000446620|TAS2R39	ENSG00000236398|ENST00000446620|TAS2R39	ENSG00000236398|ENST00000446620|TAS2R39	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.371826171875	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.29	1	117.26	116.76	117.76	-0.024147								0	0	0	0.26704	1	30364	30364		0.6015	0.076735	1				38090	8502	22253	22254	46028	46028					0.13292484033490837
RLQRAVQF	8	Unmodified	_RLQRAVQF_					0	0	0			REV__ENSG00000178163|ENST00000326756|ZNF518B	REV__ENSG00000178163|ENST00000326756|ZNF518B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3004150390625	2	509.30125	1016.58795	0.29923	0.0001524	-1.4029	-0.0007145	-1.1037	-0.0005621	509.30045656457366	20.147	0.63683	20.147	19.877	20.514	0					38	23	2	0	0	0	0.34046	1	2466	2466		14.582	0	1	293630	+		38091	18021	22254	22255	46029	46029					0.08031691011171915
RLRAELLDLKA	11	Unmodified	_RLRAELLDLKA_					0	0	0		ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.3875122070312	2	649.401161	1296.78777	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.234	1	95.232	94.732	95.732	-0.0020142								0	0	0	0.37707	1	25436	25436		2.2828	0.80087	1				38092	5912	22255	22256	46030	46030					0.15124701168269894
RLRALAEE	8	Unmodified	_RLRALAEE_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF	nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000135636|O75923-15|DYSF	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.27728271484375	2	479.277441	956.540328	0.30702	0.00014715	-0.21348	-0.00010232	0.093539	4.4831E-05	479.2772110833068	86.656	1.0203	86.743	86.398	87.418	0.087097					68	43	2	0	0	0	0.344	1	22845	22845		2.5775	0	1	475650			38093	12859;3889	22256	22257	46031	46031					0.06031992020302823
RLREGYSV	8	Unmodified	_RLREGYSV_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;nc|ENSG00000198198|Q5T011-4|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2512512207031	2	490.269616	978.524678	0.25306	0.00012407	2.3014	0.0011283	2.5544	0.0012524	490.2694824801425	27.023	0.67941	27.023	26.558	27.237	0					42	23	2	0	0	0	0.34117	1	4487	4487		13.906	3.0821	1	72859			38094	8049	22257	22258	46032	46032					0.03455705503279205
RLRELLRRYYR	11	Unmodified	_RLRELLRRYYR_					0	0	0			REV__ENSG00000133116|ENST00000380099|KL	REV__ENSG00000133116|ENST00000380099|KL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8352661132812	3	531.986464	1592.93756	0.22367	0.00011899	1.4108	0.00075054	1.6345	0.00086953	531.9882437747943	96.703	0.049973	96.773	96.733	96.782	0.070465					6	4	2	0	0	0	0.33351	1	25851	25851		0.094841	0.094841	1	67154	+		38095	15609	22258	22259	46033	46033					0.16481066230744545
RLREMMRR	8	Unmodified	_RLREMMRR_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.7846069335938	2	574.318594	1146.62264	0.44471	0.00025541	2.2982	0.0013199	2.7429	0.0015753	574.32015977304	85.065	0.30653	85.065	84.895	85.202	0					14	11	2	0	0	0	0.34367	1	22339	22339		4.3292	0	1	81550			38096	1896	22259	22260	46034	46034					0.055188675559747935
RLREQRQRR	9	Unmodified	_RLREQRQRR_					0	0	0			REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF	REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.3875732421875	2	649.387242	1296.75993	0.25344	0.00016458	0.87251	0.0005666	1.1259	0.00073118	649.3876758327615	95.25	1.0619	95.333	94.669	95.731	0.082779					126	94	2	0	0	0	0.34681	2	25284	25284;25308		1.8442	1.8442	1	184690	+		38097	13457	22260	22261	46035;46036	46035					0.12342235751384578
RLREQRQRR	9	Unmodified	_RLREQRQRR_					0	0	0			REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF	REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.3878173828125	2	649.387242	1296.75993	0.37171	0.00024138	0.7892	0.0005125	1.1609	0.00075388	649.3875930397958	95.208	0.95196	95.206	94.868	95.82	-0.0020142					135	88	2	0	0	0	0.34681	4	25341	25341;25346;25473;25554		1.8442	0.36234	1	156060	+		38098	13457	22260	22261	46037;46038;46039;46040	46037					0.12342235751384578
RLREQRQRR	9	Unmodified	_RLREQRQRR_					0	0	0			REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF	REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.3875732421875	2	649.387242	1296.75993	0.37171	0.00024138	0.7892	0.0005125	1.1609	0.00075388	649.3875930397958	95.208	0.95196	95.206	94.868	95.82	-0.0020142					135	88	2	0	0	0	0.26168	1	25395	25395		1.8442	0.19162	1	156060	+		38099	13457	22260	22261	46041	46041					0.12342235751384578
RLREQRQRR	9	Unmodified	_RLREQRQRR_					0	0	0			REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF	REV__ENST00000532517.5_1_11:118498004-118527530:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	649.387242	1296.75993	0.25344	0.00016458	0.87251	0.0005666	1.1259	0.00073118	649.3876758327615	95.25	1.0619	95.333	94.669	95.731	0.082779	0.063156	5.6118E-05	NaN	1.8442	126	94	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184690	+		38100	13457	22260	22261							0.12342235751384578
RLRERHQDVL	10	Unmodified	_RLRERHQDVL_					0	0	0		ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.25286865234375	3	441.253098	1320.73747	-0.11394	-5.0278E-05	0.21459	9.4691E-05	0.10065	4.4412E-05	441.25336585952283	25.591	0.33453	25.56	25.378	25.713	-0.03141					27	11	3	0	0	0	0.38522	1	4113	4113		6.1918	1.7857	1	127150			38101	1964	22261	22262	46042	46042					0.08992591563128371
RLRERHQDVL	10	Unmodified	_RLRERHQDVL_					0	0	0		ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	441.253098	1320.73747	0.022222	9.8057E-06	-0.11345	-5.0061E-05	-0.091229	-4.0255E-05	441.25313068312397	25.458	0.44755	25.458	25.267	25.714	0	-0.04458	-0.0001391	NaN	6.1918	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107110			38102	1964	22261	22262							0.08992591563128371
RLRERHQDVL	10	Unmodified	_RLRERHQDVL_					0	0	0		ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	441.253098	1320.73747	-0.18146	-8.0072E-05	-0.0097829	-4.3168E-06	-0.19125	-8.4388E-05	441.25308693439877	25.547	0.363	25.491	25.314	25.677	-0.055931	-0.01217	-1.872E-06	NaN	6.1918	32	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107290			38103	1964	22261	22262							0.08992591563128371
RLRERHQDVL	10	Unmodified	_RLRERHQDVL_					0	0	0		ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	441.253098	1320.73747	-0.11394	-5.0278E-05	0.21459	9.4691E-05	0.10065	4.4412E-05	441.25336585952283	25.591	0.33453	25.56	25.378	25.713	-0.03141	0.05675	0.00029515	NaN	6.1918	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127150			38104	1964	22261	22262							0.08992591563128371
RLRFNPRWRRR	11	Unmodified	_RLRFNPRWRRR_					0	0	0		ENST00000535818.1_1_11:60906157-60928919:-|nuORF;ENST00000536000.1_1_11:60900588-60928919:-|nuORF	ENST00000535818.1_1_11:60906157-60928919:-|nuORF	ENST00000535818.1_1_11:60906157-60928919:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8154296875	3	538.322181	1611.94471	0.085679	4.6123E-05	0.56957	0.00030661	0.65524	0.00035273	538.3221014339659	12.926	0.28746	12.858	12.734	13.022	-0.067496					11	9	2	0	0	0	0.33351	1	296	296		0.094841	0	1	71838			38105	11677	22262	22263	46043	46043					0.16321843621767584
RLRFSLSQ	8	Unmodified	_RLRFSLSQ_					0	0	0		ENST00000544520.5_1_15:72546082-72558314:-|nuORF;nc|ENSG00000137817|Q2NL67-3|PARP6;nc|ENSG00000137817|Q2NL67-2|PARP6;ENSG00000137817|ENST00000569795|PARP6	ENST00000544520.5_1_15:72546082-72558314:-|nuORF	ENST00000544520.5_1_15:72546082-72558314:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.80584716796875	2	503.793258	1005.57196	0.14829	7.4706E-05	0.21041	0.000106	0.3587	0.00018071	503.7932204428919	26.146	0.64443	26.108	25.902	26.547	-0.038671					53	22	3	0	0	0	0.42642	1	4380	4380		13.906	2.2658	1	588090			38106	4081	22263	22264	46044	46044					0.06939984774271579
RLRHPAPPF	9	Unmodified	_RLRHPAPPF_					0	0	0			REV__ENST00000320631.7_1_11:64621147-64621318:-|nuORF	REV__ENST00000320631.7_1_11:64621147-64621318:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8181762695312	2	545.817067	1089.61958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.39	1	118.36	117.86	118.86	-0.024147								0	0	0	0.26704	1	30604	30604		0.6015	0.076735	1		+		38107	19961	22264	22265	46045	46045					0.07835683765119938
RLRHPAPPF	9	Unmodified	_RLRHPAPPF_					0	0	0			REV__ENST00000320631.7_1_11:64621147-64621318:-|nuORF	REV__ENST00000320631.7_1_11:64621147-64621318:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8176879882812	2	545.817067	1089.61958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.71	1	118.69	118.19	119.19	-0.024147								0	0	0	0.26258	1	30675	30675		2.3027	0.4585	1		+		38108	19961	22264	22265	46046	46046					0.07835683765119938
RLRKERFERRQ	11	Unmodified	_RLRKERFERRQ_					0	0	0			REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3102416992188	3	525.309718	1572.90732	0.35525	0.00018662	0.059549	3.1282E-05	0.4148	0.0002179	525.3096652742355	95.861	2.1594	95.938	94.551	96.71	0.077408					569	196	4	0	0	0	0.47713	3	25510	25389;25510;25585		1.1098	0	1	1130000	+		38109	14424	22265	22266	46047;46048;46049	46048					0.14378707565538207
RLRKERFERRQ	11	Unmodified	_RLRKERFERRQ_					0	0	0			REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	REV__nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3098754882812	3	525.309718	1572.90732	0.5161	0.00027111	0.23407	0.00012296	0.75017	0.00039407	525.3096391676545	97.374	1.0388	97.368	96.683	97.722	-0.0055466					399	106	5	0	0	0	0.48212	1	26032	26032		0.45452	0	1	2384700	+		38110	14424	22265	22266	46050	46050					0.14378707565538207
RLRLGGAAL	9	Unmodified	_RLRLGGAAL_					0	0	0		ENST00000480234.1_1_21:46285323-46293531:-|nuORF;ENSG00000183255|ENST00000330938|PTTG1IP	ENST00000480234.1_1_21:46285323-46293531:-|nuORF	ENST00000480234.1_1_21:46285323-46293531:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7976379394531	2	463.798343	925.582134	-1.0271	-0.00047635	-0.2931	-0.00013594	-1.3202	-0.00061229	463.79817137352995	35.022	0.83039	35.097	34.814	35.644	0.075306					77	29	4	0	0	0	0.013258	1	6974	6974		74.423	7.0789	1	2755900			38111	7355	22266	22267	46051	46051					0.11636592499519338
RLRLGGAAL	9	Unmodified	_RLRLGGAAL_					0	0	0		ENST00000480234.1_1_21:46285323-46293531:-|nuORF;ENSG00000183255|ENST00000330938|PTTG1IP	ENST00000480234.1_1_21:46285323-46293531:-|nuORF	ENST00000480234.1_1_21:46285323-46293531:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7976989746094	2	463.798343	925.582134	-0.81688	-0.00037887	-0.35456	-0.00016444	-1.1714	-0.00054331	463.7981770585352	34.988	0.8082	35.065	34.78	35.588	0.077377					77	28	4	0	0	0	0.055495	1	6931	6931		50.855	3.9342	1	2592500			38112	7355	22266	22267	46052	46052					0.11636592499519338
RLRPATRST	9	Unmodified	_RLRPATRST_					0	0	0			REV__ENST00000345728.9_2_11:63978755-63978827:+|nuORF	REV__ENST00000345728.9_2_11:63978755-63978827:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7996215820312	2	529.314889	1056.61522	0.034505	1.8264E-05	-0.10468	-5.5411E-05	-0.070179	-3.7147E-05	529.3147485712859	13.726	0.22463	13.621	13.513	13.738	-0.10466					9	7	2	0	0	0	0.26168	1	525	525		1.8442	0	1	27333	+		38113	20147	22267	22268	46053	46053					0.08918174551558877
RLRPAVSIS	9	Unmodified	_RLRPAVSIS_					0	0	0			REV__nc|ENSG00000118946|O14917-2|PCDH17	REV__nc|ENSG00000118946|O14917-2|PCDH17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2512512207031	2	499.808908	997.603263	0.2612	0.00013055	0.052649	2.6314E-05	0.31384	0.00015686	499.8088160252907	27.169	0.38969	27.158	26.984	27.374	-0.01156					24	13	2	0	0	0	0.26031	1	4599	4599		3.5965	0	1	91490	+		38114	22967	22268	22269	46054	46054					0.10436557808372982
RLRQALQA	8	Unmodified	_RLRQALQA_					0	0	0		ENSG00000143375|ENST00000271636|CGN	ENSG00000143375|ENST00000271636|CGN	ENSG00000143375|ENST00000271636|CGN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.79534912109375	2	478.293425	954.572297	-0.18947	-9.0623E-05	-0.30395	-0.00014538	-0.49342	-0.000236	478.2932583462541	12.206	0.31389	12.206	12.119	12.433	0					15	11	2	0	0	0	0.34437	1	76	76		0.69038	0	1	77068			38115	4507	22269	22270	46055	46055					0.0931940449411286
RLRQHQLRRRG	11	Unmodified	_RLRQHQLRRRG_					0	0	0			REV__ENST00000262304.8_1_16:2141877-2142581:-|nuORF	REV__ENST00000262304.8_1_16:2141877-2142581:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.63458251953125	3	492.634536	1474.88178	0.24922	0.00012277	-0.11256	-5.5452E-05	0.13666	6.7321E-05	492.6344663430911	93.757	2.7994	93.757	92.584	95.383	0					591	241	4	0	0	0	0.47545	6	24883	24883;24921;24957;24996;25040;25115		1.3296	0	1	1928400	+		38116	19608	22270	22271	46056;46057;46058;46059;46060;46061	46056					0.16333277833746251
RLRQHQLRRRG	11	Unmodified	_RLRQHQLRRRG_					0	0	0			REV__ENST00000262304.8_1_16:2141877-2142581:-|nuORF	REV__ENST00000262304.8_1_16:2141877-2142581:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.63458251953125	3	492.634536	1474.88178	0.32952	0.00016233	-0.14364	-7.076E-05	0.18589	9.1575E-05	492.6344416634122	93.398	1.4559	93.485	92.309	93.765	0.08667					362	120	4	0	0	0	0.48212	2	24856	24856;24896		0.45452	0.45452	1	3583500	+		38117	19608	22270	22271	46062;46063	46062					0.16333277833746251
RLRQHQLRRRG	11	Unmodified	_RLRQHQLRRRG_					0	0	0			REV__ENST00000262304.8_1_16:2141877-2142581:-|nuORF	REV__ENST00000262304.8_1_16:2141877-2142581:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	492.634536	1474.88178	0.46391	0.00022854	-0.15633	-7.7015E-05	0.30758	0.00015152	492.63441249702106	93.388	2.6935	93.388	92.695	95.389	-0.00051117	-0.15555	-2.365E-05	NaN	1.3296	805	231	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3242300	+		38118	19608	22270	22271							0.16333277833746251
RLRQILQEKN	10	Unmodified	_RLRQILQEKN_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.3888549804688	2	649.388585	1296.76262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.618	1	95.618	95.118	96.118	0								0	0	0	0.38166	1	25527	25527		1.4819	0	1		+		38119	16252	22271	22272	46064	46064					0.12610646365692446
RLRQRLRLRV	10	Unmodified	_RLRQRLRLRV_					0	0	0		ENST00000532817.5_3_19:55677701-55678007:-|nuORF	ENST00000532817.5_3_19:55677701-55678007:-|nuORF	ENST00000532817.5_3_19:55677701-55678007:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.77105712890625	3	455.972378	1364.8953	0.21848	9.9623E-05	1.3561	0.00061835	1.5746	0.00071798	455.97272396236303	30.023	0.56276	30.036	29.746	30.309	0.012266					33	19	3	0	0	0	0.32174	1	5357	5357		0.15932	0.064481	1	106340			38120	11644	22272	22273	46065	46065					0.22745135612990453
RLRQRLRLRV	10	Unmodified	_RLRQRLRLRV_					0	0	0		ENST00000532817.5_3_19:55677701-55678007:-|nuORF	ENST00000532817.5_3_19:55677701-55678007:-|nuORF	ENST00000532817.5_3_19:55677701-55678007:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	455.972378	1364.8953	0.2423	0.00011048	1.0818	0.00049326	1.3241	0.00060374	455.9728316045967	30.022	0.53269	30.022	29.75	30.282	0	-0.020985	-0.00024822	NaN	0.15932	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117990			38121	11644	22272	22273							0.22745135612990453
RLRRRLWLTME	11	Unmodified	_RLRRRLWLTME_					0	0	0		ENSG00000124134|ENST00000537075|KCNS1	ENSG00000124134|ENST00000537075|KCNS1	ENSG00000124134|ENST00000537075|KCNS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.6341552734375	3	510.633033	1528.87727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.18	1	116.16	115.66	116.66	-0.022781								0	0	0	0.38223	1	30103	30103		0.08335	0.08335	1				38122	3131	22273	22274	46066	46066					0.13398632575967895
RLRSLSPSP	9	Unmodified	_RLRSLSPSP_					0	0	0		ENST00000394487.4_1_9:120470507-120470874:+|nuORF	ENST00000394487.4_1_9:120470507-120470874:+|nuORF	ENST00000394487.4_1_9:120470507-120470874:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.27374267578125	2	506.79854	1011.58253	0.094032	4.7655E-05	0.47463	0.00024054	0.56866	0.0002882	506.79907332255044	25.987	0.59539	25.948	25.668	26.263	-0.038671					27	20	2	0	0	0	0.2524	1	4303	4303		11.495	2.9014	1	98627			38123	10071	22274	22275	46067	46067					0.0771996742871579
RLRSQPKLADV	11	Unmodified	_RLRSQPKLADV_					0	0	0		ENSG00000168427|ENST00000409223|KLHL30	ENSG00000168427|ENST00000409223|KLHL30	ENSG00000168427|ENST00000409223|KLHL30	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8820190429688	2	641.883136	1281.75172	0.25612	0.0001644	-0.44469	-0.00028544	-0.18857	-0.00012104	641.8827413169398	101.75	0.21103	101.78	101.69	101.91	0.027214					44	29	2	0	0	0	0.33324	1	27112	27112		1.1933	0	1	83977			38124	6273	22275	22276	46068	46068					0.12211243991396259
RLRTTIYLKF	10	Unmodified	_RLRTTIYLKF_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.58709716796875	3	437.602957	1309.78704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.383	1	53.439	52.939	53.939	0.056255								0	0	0	0.37666	1	12600	12600		3.5871	0.95582	1		+		38125	16816	22276	22277	46069	46069					0.14453906519179327
RLRVEDLHVTG	11	Unmodified	_RLRVEDLHVTG_					0	0	0			REV__ENST00000556103.1_1_14:23946427-23946595:+|nuORF	REV__ENST00000556103.1_1_14:23946427-23946595:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.86474609375	2	647.864943	1293.71533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.21	1	116.23	115.73	116.73	0.020988								0	0	0	0.37382	1	30157	30157		2.9952	1.5133	1		+		38126	22255	22277	22278	46070	46070					0.08022367094690708
RLSFFVVLER	10	Unmodified	_RLSFFVVLER_					0	0	0			REV__ENSG00000112706|ENST00000369950|IMPG1	REV__ENSG00000112706|ENST00000369950|IMPG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3717041015625	2	633.371872	1264.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.7	1	102.7	102.2	103.2	0								0	0	0	0.38166	1	27309	27309		1.4819	0	1		+		38127	14785	22278	22279	46071	46071					0.10741644593804267
RLSFRIPQ	8	Unmodified	_RLSFRIPQ_					0	0	0			REV__ENSG00000178343|ENST00000319234|SHISA3	REV__ENSG00000178343|ENST00000319234|SHISA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.81622314453125	2	508.803626	1015.5927	0.33098	0.00016841	-0.27028	-0.00013752	0.060699	3.0884E-05	508.8033869908585	38.408	0.83088	38.506	38.007	38.838	0.097527					94	29	4	0	0	0	0.37071	1	8096	8096		22.736	2.2827	1	1961400	+		38128	18030	22279	22280	46072	46072					0.08552575153930775
RLSINGVFTV	10	Unmodified	_RLSINGVFTV_					0	0	0			REV__ENST00000337872.8_1_4:4304620-4317556:+|nuORF	REV__ENST00000337872.8_1_4:4304620-4317556:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3034057617188	2	553.321848	1104.62914	0.31259	0.00017296	0.475	0.00026283	0.78759	0.00043579	553.3220360017285	28.795	0.49401	28.791	28.599	29.093	-0.0042572					27	16	2	0	0	0	0.34795	1	5157	5157		13.042	0	1	362020	+		38129	20088	22280	22281	46073	46073					0.08101407260005544
RLSINGVFTV	10	Unmodified	_RLSINGVFTV_					0	0	0			REV__ENST00000337872.8_1_4:4304620-4317556:+|nuORF	REV__ENST00000337872.8_1_4:4304620-4317556:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3037109375	2	553.321848	1104.62914	0.13762	7.6147E-05	0.67839	0.00037537	0.81601	0.00045151	553.322120495874	28.835	0.49485	28.835	28.606	29.1	0.0004673					32	17	2	0	0	0	0.35231	1	5142	5142		12.241	0	1	305110	+		38130	20088	22280	22281	46074	46074					0.08101407260005544
RLSISGWFHG	10	Unmodified	_RLSISGWFHG_					0	0	0		ENSG00000087263|ENST00000566157|OGFOD1;nc|ENSG00000087263|Q8N543-2|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3038940429688	2	580.30399	1158.59343	0.25657	0.00014889	0.57516	0.00033377	0.83173	0.00048266	580.3040421390896	62.187	0.70776	62.284	62.03	62.738	0.096985					82	25	5	0	0	0	0.34795	1	15364	15364		13.042	2.8919	1	634800			38131	1301	22281	22282	46075	46075					0.020473698029718435
RLSISGWFHG	10	Unmodified	_RLSISGWFHG_					0	0	0		ENSG00000087263|ENST00000566157|OGFOD1;nc|ENSG00000087263|Q8N543-2|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.29296875	2	580.30399	1158.59343	0.31875	0.00018497	-0.10718	-6.2195E-05	0.21157	0.00012277	580.3039931237787	62.228	0.69622	62.219	61.979	62.675	-0.0085526					61	25	3	0	0	0	0.34795	1	15301	15301		13.042	2.8919	1	646260			38132	1301	22281	22282	46076	46076					0.020473698029718435
RLSQPPKL	8	Unmodified	_RLSQPPKL_					0	0	0			REV__nc|ENSG00000174611|Q8NBH2-3|KY	REV__nc|ENSG00000174611|Q8NBH2-3|KY	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7913513183594	2	469.792727	937.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.32	1	71.295	70.795	71.795	-0.024872								0	0	0	0.33122	1	18110	18110		23.148	2.6948	1		+		38133	17845	22282	22283	46077	46077					0.09961770405368497
RLSRRAKELI	10	Unmodified	_RLSRRAKELI_					0	0	0			REV__ENST00000460460.1_1_3:39180192-39180276:+|nuORF	REV__ENST00000460460.1_1_3:39180192-39180276:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.5976867675781	3	414.598206	1240.77279	0.18064	7.4895E-05	-0.88828	-0.00036828	-0.70764	-0.00029338	414.59756618039125	95.705	1.2987	95.782	95.308	96.606	0.077408					296	119	4	0	0	0	0.40262	1	25535	25535		1.4551	1.4551	1	1469900	+		38134	17433	22283	22284	46078	46078					0.1620325409094221
RLSSPGQLK	9	Unmodified	_RLSSPGQLK_					0	0	0		BARX2|p.G230Yfs*31|1|0.08|ENSG00000043039|chr11:129451249-129451250|-/TATAACCTCAC|frameshift_variant;ENSG00000043039|ENST00000281437|BARX2	BARX2|p.G230Yfs*31|1|0.08|ENSG00000043039|chr11:129451249-129451250|-/TATAACCTCAC|frameshift_variant	BARX2|p.G230Yfs*31|1|0.08|ENSG00000043039|chr11:129451249-129451250|-/TATAACCTCAC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.29315185546875	2	493.293091	984.571629	0.24801	0.00012234	-0.051379	-2.5345E-05	0.19663	9.6995E-05	493.293087937608	19.311	1.2733	19.256	18.657	19.93	-0.055691					89	44	4	0	0	0	0.2422	1	2195	2195		19.362	1.2156	1	148960			38135	70	22284	22285	46079	46079					0.07872565054435654
RLSSVPTKP	9	Unmodified	_RLSSVPTKP_					0	0	0			REV__ENSG00000185448|ENST00000346193|FAM47A;REV__ENSG00000198173|ENST00000358047|FAM47C	REV__ENSG00000185448|ENST00000346193|FAM47A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.7952575683594	2	492.795466	983.57638	0.5246	0.00025852	-0.58011	-0.00028588	-0.055512	-2.7356E-05	492.79525066420433	20.067	2.2041	20.011	19.337	21.542	-0.055693					119	78	3	0	0	0	0.30064	1	2362	2362		8.7454	0	1	271650	+		38136	18381;18806	22285	22286	46080	46080					0.08393449197171776
RLTEASYL	8	Unmodified	_RLTEASYL_					0	0	0			REV__nc|ENSG00000122367|O75112-5|LDB3	REV__nc|ENSG00000122367|O75112-5|LDB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.75732421875	2	476.758549	951.502546	-0.034067	-1.6242E-05	-0.50508	-0.0002408	-0.53915	-0.00025704	476.75778218256085	15.349	0.26648	15.284	15.158	15.424	-0.064413					13	8	2	0	0	0	0.45431	1	1034	1034		4.3292	0	1	46182	+		38137	15154	22286	22287	46081	46081					0.024854810348415413
RLTGLFICLLL	11	Unmodified	_RLTGLFICLLL_					0	0	0			REV__nc|ENSG00000253873|Q9Y5H2-2|PCDHGA11	REV__nc|ENSG00000253873|Q9Y5H2-2|PCDHGA11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2431335449219	3	421.261543	1260.7628	-0.33971	-0.00014311	0.15749	6.6345E-05	-0.18222	-7.6763E-05	421.26156857357654	14.93	0.58797	14.93	14.701	15.289	0					38	20	3	0	0	0	0.33296	1	896	896		2.6312	0.72486	1	183830	+		38138	19231	22287	22288	46082	46082					0.14284930041321786
RLTHQIQEL	9	Unmodified	_RLTHQIQEL_					0	0	0		nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.3126831054688	2	569.32238	1136.63021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.825	1	77.825	77.325	78.325	0								0	0	0	0.21353	1	20106	20106		18.146	0	1				38139	857	22288	22289	46083	46083					0.06735621628899935
RLTPLEACAHS	11	Unmodified	_RLTPLEACAHS_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.3078002929688	2	599.305872	1196.59719	0.20508	0.0001229	2.1772	0.0013048	2.3823	0.0014277	599.3073897118364	12.595	0.29011	12.499	12.356	12.646	-0.096607					23	9	4	0	0	0	0.47649	1	202	202		1.1933	0.66858	1	51298			38140	1208	22289	22290	46084	46084					0.0067567151454568375
RLTYPRAVVF	10	Unmodified	_RLTYPRAVVF_					0	0	0		ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1	ENSG00000130714|ENST00000402686|POMT1	ENSG00000130714|ENST00000402686|POMT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.3619995117188	2	611.358765	1220.70298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.454	1	86.538	86.038	87.038	0.084251								0	0	0	0.35611	1	22747	22747		12.241	0	1				38141	3502	22290	22291	46085	46085					0.10145375422303005
RLTYPRAVVF	10	Unmodified	_RLTYPRAVVF_					0	0	0		ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1	ENSG00000130714|ENST00000402686|POMT1	ENSG00000130714|ENST00000402686|POMT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.3568725585938	2	611.358765	1220.70298	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.681	1	86.769	86.269	87.269	0.08709								0	0	0	0.35611	1	22817	22817		12.241	1.4411	1				38142	3502	22290	22291	46086	46086					0.10145375422303005
RLVELTTK	8	Unmodified	_RLVELTTK_					0	0	0			REV__ENSG00000258472|ENST00000531839|unknown;REV__ENSG00000076382|ENST00000321765|SPAG5	REV__ENSG00000076382|ENST00000321765|SPAG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.8054504394531	2	480.297842	958.581131	-0.025143	-1.2076E-05	-0.031114	-1.4944E-05	-0.056257	-2.702E-05	480.297756903365	12.204	0.19973	12.107	12.037	12.236	-0.096607					11	7	2	0	0	0	0.34438	1	96	96		0.6015	0	1	22405	+		38143	19270;13829	22291	22292	46087	46087					0.10018333339928631
RLVFIDCPGKL	11	Unmodified	_RLVFIDCPGKL_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.8599243164062	2	630.860283	1259.70601	0.54647	0.00034475	-0.41301	-0.00026055	0.13347	8.4198E-05	630.8596973214932	85.777	2.7717	85.768	84.981	87.753	-0.0090027					335	114	4	0	0	0	0.44523	1	22846	22846		5.2969	0.39987	1	2131100			38144	7899	22292	22293	46088	46088					0.08654882484802329
RLVFIGTRD	9	Unmodified	_RLVFIGTRD_					0	0	0		ENST00000374006.1_2_10:52512294-52514342:+|nuORF	ENST00000374006.1_2_10:52512294-52514342:+|nuORF	ENST00000374006.1_2_10:52512294-52514342:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2978515625	2	538.81419	1075.61383	0.61466	0.00033119	1.3287	0.00071593	1.9434	0.0010471	539.315536410156	60.408	0.74007	60.503	60.268	61.008	0.095089					55	26	3	0	0	0	0.23784	1	14785	14785		13.906	1.6654	1	5977100			38145	9883	22293	22294	46089	46089					0.07904540462800469
RLVLDFIYVQ	10	Unmodified	_RLVLDFIYVQ_					0	0	0		nc|ENSG00000158865|Q8WWX8-6|SLC5A11;nc|ENSG00000158865|Q8WWX8-5|SLC5A11;nc|ENSG00000158865|Q8WWX8-3|SLC5A11;nc|ENSG00000158865|Q8WWX8-2|SLC5A11;ENSG00000158865|ENST00000424767|SLC5A11;nc|ENSG00000158865|Q8WWX8-4|SLC5A11	nc|ENSG00000158865|Q8WWX8-6|SLC5A11	nc|ENSG00000158865|Q8WWX8-6|SLC5A11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3679809570312	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.31	1	114.31	113.81	114.81	0								0	0	0	0.38166	1	29661	29661		1.4819	0	1				38146	5379	22294	22295	46090	46090					0.0961882249964674
RLVLDFIYVQ	10	Unmodified	_RLVLDFIYVQ_					0	0	0		nc|ENSG00000158865|Q8WWX8-6|SLC5A11;nc|ENSG00000158865|Q8WWX8-5|SLC5A11;nc|ENSG00000158865|Q8WWX8-3|SLC5A11;nc|ENSG00000158865|Q8WWX8-2|SLC5A11;ENSG00000158865|ENST00000424767|SLC5A11;nc|ENSG00000158865|Q8WWX8-4|SLC5A11	nc|ENSG00000158865|Q8WWX8-6|SLC5A11	nc|ENSG00000158865|Q8WWX8-6|SLC5A11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.369140625	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.51	1	115.51	115.01	116.01	0								0	0	0	0.38166	1	29933	29933		1.4819	0	1				38147	5379	22294	22295	46091	46091					0.0961882249964674
RLVLDFIYVQ	10	Unmodified	_RLVLDFIYVQ_					0	0	0		nc|ENSG00000158865|Q8WWX8-6|SLC5A11;nc|ENSG00000158865|Q8WWX8-5|SLC5A11;nc|ENSG00000158865|Q8WWX8-3|SLC5A11;nc|ENSG00000158865|Q8WWX8-2|SLC5A11;ENSG00000158865|ENST00000424767|SLC5A11;nc|ENSG00000158865|Q8WWX8-4|SLC5A11	nc|ENSG00000158865|Q8WWX8-6|SLC5A11	nc|ENSG00000158865|Q8WWX8-6|SLC5A11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.368896484375	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.54	1	119.54	119.04	120.04	0								0	0	0	0.38166	1	30839	30839		1.4819	0	1				38148	5379	22294	22295	46092	46092					0.0961882249964674
RLVLDFIYVQ	10	Unmodified	_RLVLDFIYVQ_					0	0	0		nc|ENSG00000158865|Q8WWX8-6|SLC5A11;nc|ENSG00000158865|Q8WWX8-5|SLC5A11;nc|ENSG00000158865|Q8WWX8-3|SLC5A11;nc|ENSG00000158865|Q8WWX8-2|SLC5A11;ENSG00000158865|ENST00000424767|SLC5A11;nc|ENSG00000158865|Q8WWX8-4|SLC5A11	nc|ENSG00000158865|Q8WWX8-6|SLC5A11	nc|ENSG00000158865|Q8WWX8-6|SLC5A11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3687133789062	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.95	1	104.95	104.45	105.45	0.0018463								0	0	0	0.38166	1	27842	27842		1.4819	0	1				38149	5379	22294	22295	46093	46093					0.0961882249964674
RLVLDFIYVQ	10	Unmodified	_RLVLDFIYVQ_					0	0	0		nc|ENSG00000158865|Q8WWX8-6|SLC5A11;nc|ENSG00000158865|Q8WWX8-5|SLC5A11;nc|ENSG00000158865|Q8WWX8-3|SLC5A11;nc|ENSG00000158865|Q8WWX8-2|SLC5A11;ENSG00000158865|ENST00000424767|SLC5A11;nc|ENSG00000158865|Q8WWX8-4|SLC5A11	nc|ENSG00000158865|Q8WWX8-6|SLC5A11	nc|ENSG00000158865|Q8WWX8-6|SLC5A11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3682861328125	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.57	1	119.6	119.1	120.1	0.027756								0	0	0	0.38166	1	30922	30922		1.4819	0	1				38150	5379	22294	22295	46094	46094					0.0961882249964674
RLWHRFPNKWR	11	Unmodified	_RLWHRFPNKWR_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|3.627191007074611|0.2056128638309657|4.14|521.0|39|2|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|3.627191007074611|0.2056128638309657|4.14|521.0|39|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.6296997070312	3	532.632132	1594.87457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.88	1	111.87	111.37	112.37	-0.015625								0	0	0	0.38222	1	29108	29108		0.094841	0.011491	1		+		38151	22829	22295	22296	46095	46095					0.10092545233351302
RLWHRFPNKWR	11	Unmodified	_RLWHRFPNKWR_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|3.627191007074611|0.2056128638309657|4.14|521.0|39|2|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|3.627191007074611|0.2056128638309657|4.14|521.0|39|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.6300659179688	3	532.632132	1594.87457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.72	1	111.73	111.23	112.23	0.0131								0	0	0	0.38222	1	29083	29083		0.094841	0.094841	1		+		38152	22829	22295	22296	46096	46096					0.10092545233351302
RLWHRFPNKWR	11	Unmodified	_RLWHRFPNKWR_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|3.627191007074611|0.2056128638309657|4.14|521.0|39|2|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|3.627191007074611|0.2056128638309657|4.14|521.0|39|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.6301879882812	3	532.632132	1594.87457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.73	1	111.74	111.24	112.24	0.0131								0	0	0	0.38222	1	29087	29087		0.094841	0.011491	1		+		38153	22829	22295	22296	46097	46097					0.10092545233351302
RLWMWSWKHIR	11	Unmodified	_RLWMWSWKHIR_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant;VPS13A|p.L1845Vfs*28|1|0.03|ENSG00000197969|chr9:77321285-77321286|-/GTACATT|frameshift_variant;VPS13A|p.Y1116Ifs*27|1|0.25|ENSG00000197969|chr9:77293345-77293345|T/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7637329101562	3	533.622357	1597.84524	0.1762	9.4026E-05	0.6116	0.00032636	0.7878	0.00042039	533.6227221319496	42.655	0.41143	42.74	42.539	42.951	0.085197					25	14	2	0	0	0	0.3333	1	9330	9330		1.3296	0	1	280150			38154	8020	22296	22297	46098	46098					0.07023264892836778
RLWRWFWS	8	Unmodified	_RLWRWFWS_					0	0	0			REV__ENST00000339526.8_1_1:182360314-182360662:-|nuORF	REV__ENST00000339526.8_1_1:182360314-182360662:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.58367919921875	3	412.885687	1235.63523	-0.52977	-0.00021873	4.0293	0.0016636	3.4995	0.0014449	412.8862158066899	35.365	0.13586	35.365	35.276	35.412	0					6	4	2	0	0	0	0.344	1	7087	7087		1.6526	0	1	31102	+		38155	20098	22297	22298	46099	46099					0.02683970282168957
RLWTSEPRW	9	Unmodified	_RLWTSEPRW_					0	0	0		ENST00000225296.7_1_17:5371988-5372192:-|nuORF	ENST00000225296.7_1_17:5371988-5372192:-|nuORF	ENST00000225296.7_1_17:5371988-5372192:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.8840637207031	3	410.884123	1229.63054	-0.29797	-0.00012243	0.25247	0.00010374	-0.045493	-1.8693E-05	410.8841143760383	15.521	1.0512	15.521	15.012	16.063	0					114	36	4	0	0	0	0.2615	1	1074	1074		2.4985	0	1	108330			38156	8841	22298	22299	46100	46100					0.024910413487532423
RLYALEETF	9	Unmodified	_RLYALEETF_					0	0	0			REV__ENSG00000167916|ENST00000264651|KRT24	REV__ENSG00000167916|ENST00000264651|KRT24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2801513671875	2	571.298039	1140.58152	0.34718	0.00019834	-3.5128	-0.0020069	-3.1656	-0.0018085	571.296424531794	53.56	0.66407	53.55	53.427	54.092	-0.0096054					32	24	2	0	0	0	0.24581	1	12810	12810		16.942	3.4344	1	480370	+	+	38157	13265	22299	22300	46101	46101					0.016857082691331016
RLYETFNRE	9	Unmodified	_RLYETFNRE_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3;TET3|p.N1450Kfs*21|1|0.29|ENSG00000187605|chr2:74101135-74101136|-/A|frameshift_variant;nc|ENSG00000187605|O43151-3|TET3	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5699462890625	3	409.875405	1226.60439	-0.16776	-6.876E-05	-0.57603	-0.0002361	-0.74378	-0.00030486	409.8751229197451	25.401	0.53185	25.401	25.182	25.714	0					33	17	3	0	0	0	0.25992	1	4095	4095		4.5289	0	1	138830			38158	7695	22300	22301	46102	46102					0.00014727386587765068
RLYETFNRE	9	Unmodified	_RLYETFNRE_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3;TET3|p.N1450Kfs*21|1|0.29|ENSG00000187605|chr2:74101135-74101136|-/A|frameshift_variant;nc|ENSG00000187605|O43151-3|TET3	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	409.875405	1226.60439	-0.16768	-6.873E-05	-0.68023	-0.00027881	-0.84791	-0.00034754	409.87497393260736	25.473	0.37901	25.417	25.186	25.565	-0.055931	-0.011968	-7.6169E-05	NaN	2.2828	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81705			38159	7695	22300	22301							0.00014727386587765068
RLYIGRTQ	8	Unmodified	_RLYIGRTQ_					0	0	0		ENSG00000134398|ENST00000256797|ERN2	ENSG00000134398|ENST00000256797|ERN2	ENSG00000134398|ENST00000256797|ERN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.8057556152344	2	503.793258	1005.57196	0.33765	0.0001701	0.047383	2.3871E-05	0.38503	0.00019397	503.79319011437804	26.218	0.81672	26.196	25.97	26.786	-0.022238					58	28	3	0	0	0	0.42371	1	4385	4385		14.838	0	1	622240			38160	3782	22301	22302	46103	46103					0.06939984774271579
RLYNEAILTF	10	Unmodified	_RLYNEAILTF_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.87982177734375	3	413.895917	1238.66592	0.084867	3.5126E-05	-2.4997	-0.0010346	-2.4148	-0.0009995	413.894764687463	22.732	0.89502	22.644	22.403	23.298	-0.087608					42	31	2	0	0	0	0.30504	1	3213	3213		21.59	4.1475	1	43318	+		38161	16296	22302	22303	46104	46104					0.05613659085884137
RLYPPFHV	8	Unmodified	_RLYPPFHV_					0	0	0		ENST00000290158.8_1_17:45761520-45761586:+|nuORF	ENST00000290158.8_1_17:45761520-45761586:+|nuORF	ENST00000290158.8_1_17:45761520-45761586:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7874755859375	2	514.787444	1027.56034	0.34017	0.00017512	0.56807	0.00029243	0.90824	0.00046755	514.7878453302911	20.104	0.53999	19.988	19.642	20.182	-0.11592					42	18	3	0	0	0	0.46022	1	2394	2394		2.3027	0	1	110530			38162	9149	22303	22304	46105	46105					0.04765787750943673
RLYPVVYHMI	10	Unmodified	_RLYPVVYHMI_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	645.2307739257812	2	645.855001	1289.69545	0.35474	0.00022911	0.70057	0.00045247	1.0553	0.00068158	645.8555780800245	55.466	0.48855	55.447	55.235	55.723	-0.019077					35	17	3	0	0	0	0.32009	1	13245	13245		3.9444	1.6616	1	385610	+		38163	13929	22304	22305	46106	46106					0.06218899830378177
RLYPVVYHMI	10	Unmodified	_RLYPVVYHMI_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	645.855001	1289.69545	0.32948	0.00021279	0.77554	0.00050089	1.105	0.00071368	645.8555874809722	55.495	0.55739	55.495	55.174	55.732	0	0.023987	6.2612E-05	NaN	3.9444	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	426330	+		38164	13929	22304	22305							0.06218899830378177
RLYQAQALYK	10	Unmodified	_RLYQAQALYK_					0	0	0		ENSG00000197557|ENST00000355689|TTC30A;ENSG00000196659|ENST00000408939|TTC30B	ENSG00000197557|ENST00000355689|TTC30A	ENSG00000197557|ENST00000355689|TTC30A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.3545532226562	2	627.35368	1252.69281	0.22629	0.00014196	0.63904	0.00040091	0.86533	0.00054287	627.3540738303165	33.13	0.41173	33.13	32.924	33.336	0					31	14	3	0	0	0	0.28078	1	6381	6381		26.268	13.226	1	294910			38165	7975	22305	22306	46107	46107					0.07656767697062605
RLYQAQALYK	10	Unmodified	_RLYQAQALYK_					0	0	0		ENSG00000197557|ENST00000355689|TTC30A;ENSG00000196659|ENST00000408939|TTC30B	ENSG00000197557|ENST00000355689|TTC30A	ENSG00000197557|ENST00000355689|TTC30A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.3541870117188	2	627.35368	1252.69281	-0.012992	-8.1504E-06	0.54076	0.00033925	0.52777	0.0003311	627.3540431964555	32.953	0.39009	33.008	32.864	33.255	0.055309					35	13	3	0	0	0	0.15804	1	6347	6347		43.772	25.626	1	251460			38166	7975	22305	22306	46108	46108					0.07656767697062605
RLYQAQALYK	10	Unmodified	_RLYQAQALYK_					0	0	0		ENSG00000197557|ENST00000355689|TTC30A;ENSG00000196659|ENST00000408939|TTC30B	ENSG00000197557|ENST00000355689|TTC30A	ENSG00000197557|ENST00000355689|TTC30A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.3538818359375	2	627.35368	1252.69281	0.14905	9.3505E-05	0.52081	0.00032673	0.66986	0.00042024	627.3540187117126	33.022	0.40862	33.076	32.85	33.258	0.054371					33	14	3	0	0	0	0.10152	1	6362	6362		39.95	15.929	1	265120			38167	7975	22305	22306	46109	46109					0.07656767697062605
RLYVIQTL	8	Unmodified	_RLYVIQTL_					0	0	0		ENSG00000133138|ENST00000357242|TBC1D8B;TBC1D8B|p.L930Yfs*38|1|0.07|ENSG00000133138|chrX:106868452-106868452|T/-|frameshift_variant	ENSG00000133138|ENST00000357242|TBC1D8B	ENSG00000133138|ENST00000357242|TBC1D8B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.79779052734375	2	503.30821	1004.60187	0.47825	0.00024071	-2.1338	-0.001074	-1.6556	-0.00083327	503.3064618167824	67.814	0.53833	67.892	67.461	68	0.078041					43	18	4	0	0	0	0.42077	1	17022	17022		15.847	2.3393	1	207830			38168	3698	22306	22307	46110	46110					0.09974923719619255
RMCMRCTV	8	Unmodified	_RMCMRCTV_					0	0	0			REV__ENST00000227322.7_2_11:116649741-116650516:-|nuORF	REV__ENST00000227322.7_2_11:116649741-116650516:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2220458984375	2	500.221385	998.428217	0.4471	0.00022365	0.70322	0.00035176	1.1503	0.00057541	500.22176055645315	63.494	0.54119	63.494	63.285	63.826	0					31	19	2	0	0	0	0.45307	1	15733	15733		4.756	0	1	334530	+		38169	19443	22307	22308	46111	46111					-0.07105967915822475
RMCMRCTV	8	Unmodified	_RMCMRCTV_					0	0	0			REV__ENST00000227322.7_2_11:116649741-116650516:-|nuORF	REV__ENST00000227322.7_2_11:116649741-116650516:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	500.221385	998.428217	0.46885	0.00023453	0.61637	0.00030832	1.0852	0.00054285	500.22179815548446	63.422	0.51178	63.518	63.256	63.768	0.095722	0.026805	3.6947E-05	NaN	4.756	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244250	+		38170	19443	22307	22308							-0.07105967915822475
RMCMRCTV	8	Unmodified	_RMCMRCTV_					0	0	0			REV__ENST00000227322.7_2_11:116649741-116650516:-|nuORF	REV__ENST00000227322.7_2_11:116649741-116650516:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	500.221385	998.428217	0.47293	0.00023657	0.25069	0.0001254	0.72363	0.00036197	500.22155271083676	63.47	0.50186	63.461	63.217	63.719	-0.0085564	-0.029692	-0.00032889	NaN	4.756	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311880	+		38171	19443	22307	22308							-0.07105967915822475
RMELGLLV	8	Unmodified	_RMELGLLV_					0	0	0			REV__nc|nan|Q9NQ32-2|C11orf16	REV__nc|nan|Q9NQ32-2|C11orf16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7684020996094	2	465.775688	929.536823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.949	1	78.006	77.506	78.506	0.057114								0	0	0	0.33625	1	20135	20135		20.871	8.3397	1		+		38172	17917	22308	22309	46112	46112					0.06923605922122533
RMELGLLV	8	Unmodified	_RMELGLLV_					0	0	0			REV__nc|nan|Q9NQ32-2|C11orf16	REV__nc|nan|Q9NQ32-2|C11orf16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.76849365234375	2	465.775688	929.536823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.286	1	78.344	77.844	78.844	0.058151								0	0	0	0.36169	1	20237	20237		9.3474	0	1		+		38173	17917	22308	22309	46113	46113					0.06923605922122533
RMEVGPATETF	11	Unmodified	_RMEVGPATETF_					0	0	0		ENSG00000236609|ENST00000457543|ZNF853	ENSG00000236609|ENST00000457543|ZNF853	ENSG00000236609|ENST00000457543|ZNF853	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.55023193359375	3	413.200901	1236.58087	0.018188	7.5154E-06	0.64169	0.00026515	0.65988	0.00027266	413.20099712963736	22.254	0.55213	22.205	21.972	22.524	-0.049377					34	18	4	0	0	0	0.33149	1	3136	3136		2.4348	0.52841	1	104140			38174	8504	22309	22310	46114	46114					-0.027954544422073013
RMFWANILVK	10	Unmodified	_RMFWANILVK_					0	0	0		ENST00000521249.1_1_14:102695383-102695488:-|nuORF	ENST00000521249.1_1_14:102695383-102695488:-|nuORF	ENST00000521249.1_1_14:102695383-102695488:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	639.363037109375	2	639.362993	1276.71143	-0.043956	-2.8104E-05	0.38343	0.00024515	0.33948	0.00021705	639.3627825252689	106.68	0.41026	106.68	106.51	106.92	0					107	63	3	0	0	0	0.41085	1	28178	28178		1.4819	0	1	1510200			38175	11489	22310	22311	46115	46115					0.08414606067276509
RMGWLPLLLL	10	Unmodified	_RMGWLPLLLL_					0	0	0		ENSG00000173531|ENST00000449682|MST1	ENSG00000173531|ENST00000449682|MST1	ENSG00000173531|ENST00000449682|MST1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.37255859375	2	606.370287	1210.72602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.43	1	113.43	112.93	113.93	0								0	0	0	0.38209	1	29463	29463		0	0	1				38176	6726	22311	22312	46116	46116					0.12908678215467262
RMGWLPLLLL	10	Unmodified	_RMGWLPLLLL_					0	0	0		ENSG00000173531|ENST00000449682|MST1	ENSG00000173531|ENST00000449682|MST1	ENSG00000173531|ENST00000449682|MST1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.370361328125	2	606.370287	1210.72602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.26	1	115.26	114.76	115.76	0								0	0	0	0.38209	1	29876	29876		0	0	1				38177	6726	22311	22312	46117	46117					0.12908678215467262
RMGWLPLLLL	10	Unmodified	_RMGWLPLLLL_					0	0	0		ENSG00000173531|ENST00000449682|MST1	ENSG00000173531|ENST00000449682|MST1	ENSG00000173531|ENST00000449682|MST1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3698120117188	2	606.370287	1210.72602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.43	1	116.43	115.93	116.93	0								0	0	0	0.38209	1	30143	30143		0	0	1				38178	6726	22311	22312	46118	46118					0.12908678215467262
RMGWLPLLLL	10	Unmodified	_RMGWLPLLLL_					0	0	0		ENSG00000173531|ENST00000449682|MST1	ENSG00000173531|ENST00000449682|MST1	ENSG00000173531|ENST00000449682|MST1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3711547851562	2	606.370287	1210.72602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.89	1	119.89	119.39	120.39	0								0	0	0	0.38209	1	30914	30914		0	0	1				38179	6726	22311	22312	46119	46119					0.12908678215467262
RMGWLPLLLL	10	Unmodified	_RMGWLPLLLL_					0	0	0		ENSG00000173531|ENST00000449682|MST1	ENSG00000173531|ENST00000449682|MST1	ENSG00000173531|ENST00000449682|MST1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3702392578125	2	606.370287	1210.72602	0.061639	3.7376E-05	0.027103	1.6435E-05	0.088743	5.3811E-05	606.3702445682893	117.3	0.12868	117.3	117.24	117.37	0					22	15	2	0	0	0	0.32176	1	30333	30333		0	0	1	23993			38180	6726	22311	22312	46120	46120					0.12908678215467262
RMGWLPLLLL	10	Unmodified	_RMGWLPLLLL_					0	0	0		ENSG00000173531|ENST00000449682|MST1	ENSG00000173531|ENST00000449682|MST1	ENSG00000173531|ENST00000449682|MST1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3703002929688	2	606.370287	1210.72602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.14	1	118.17	117.67	118.67	0.023476								0	0	0	0.38209	1	30601	30601		0	0	1				38181	6726	22311	22312	46121	46121					0.12908678215467262
RMHHHEHH	8	Unmodified	_RMHHHEHH_					0	0	0		ENSG00000171155|ENST00000304661|C1GALT1C1	ENSG00000171155|ENST00000304661|C1GALT1C1	ENSG00000171155|ENST00000304661|C1GALT1C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7531127929688	2	560.751933	1119.48931	0.40582	0.00022757	0.75419	0.00042291	1.16	0.00065048	560.7524497129745	19.87	0.49445	19.814	19.595	20.09	-0.055693					39	17	3	0	0	0	0.34434	1	2357	2357		0.79363	0.19213	1	104800			38182	6518	22312	22313	46122	46122					-0.06565235505513556
RMKKGAGV	8	Unmodified	_RMKKGAGV_					0	0	0			REV__nc|ENSG00000138326|P62847-4|RPS24	REV__nc|ENSG00000138326|P62847-4|RPS24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.5976867675781	2	423.752547	845.490542	-0.23307	-9.8766E-05	2.6017	0.0011025	2.3687	0.0010037	423.7545396692894	96.995	0.17183	97.066	97.055	97.226	0.070465					19	16	2	0	0	0	0.34434	1	25963	25963		0	0	1	33224	+		38183	23009	22313	22314	46123	46123					0.061615858106847554
RMLTPWFCISL	11	Unmodified	_RMLTPWFCISL_					0	0	0			REV__ENSG00000160007|ENST00000672722|ARHGAP35;REV__ENSG00000100852|ENST00000345122|ARHGAP5	REV__ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7665710449219	3	456.238521	1365.69373	0.086631	3.9524E-05	0.91704	0.00041839	1.0037	0.00045791	456.2382385007351	16.408	0.43701	16.346	16.121	16.558	-0.062534					30	14	3	0	0	0	0.33303	1	1276	1276		2.4348	0.18206	1	32597	+		38184	16873;14233	22314	22315	46124	46124					0.025515227501500704
RMMEPLTLIK	10	Unmodified	_RMMEPLTLIK_					0	0	0			REV__ENSG00000204610|ENST00000376694|TRIM15	REV__ENSG00000204610|ENST00000376694|TRIM15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.34814453125	2	616.348694	1230.68284	0.38949	0.00024006	-0.40772	-0.0002513	-0.018233	-1.1238E-05	616.3482223731888	66.239	0.71072	66.239	66.007	66.717	0					55	24	3	0	0	0	0.15804	2	16563	16563;16627		51.63	5.8899	1	711220	+		38185	18956	22315	22316	46125;46126	46125					0.07672120375832492
RMMEPLTLIK	10	Unmodified	_RMMEPLTLIK_					0	0	0			REV__ENSG00000204610|ENST00000376694|TRIM15	REV__ENSG00000204610|ENST00000376694|TRIM15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.3486328125	2	616.348694	1230.68284	0.36298	0.00022372	-0.60131	-0.00037061	-0.23833	-0.00014689	616.3481665459551	66.086	0.68402	66.169	65.888	66.572	0.083824					53	24	3	0	0	0	0.1693	1	16523	16523		49.554	3.8144	1	744230	+		38186	18956	22315	22316	46127	46127					0.07672120375832492
RMPEAREPPE	10	Unmodified	_RMPEAREPPE_					0	0	0		ENSG00000163380|ENST00000420581|LMOD3	ENSG00000163380|ENST00000420581|LMOD3	ENSG00000163380|ENST00000420581|LMOD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.2960815429688	2	606.295504	1210.57646	0.48575	0.00029451	0.20497	0.00012427	0.69072	0.00041878	606.2954812256916	20.258	0.43388	20.258	20.136	20.57	0					20	15	2	0	0	0	0.40262	1	2493	2493		2.9952	0	1	77355			38187	5672	22316	22317	46128	46128					-0.02040918865122876
RMPLTILWV	9	Unmodified	_RMPLTILWV_					0	0	0		ENSG00000166558|ENST00000299709|SLC38A8	ENSG00000166558|ENST00000299709|SLC38A8	ENSG00000166558|ENST00000299709|SLC38A8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3088989257812	2	564.833537	1127.65252	0.079771	4.5057E-05	-1.3416	-0.00075776	-1.2618	-0.0007127	564.8325721721926	12.605	0.60695	12.508	12.236	12.843	-0.096607					24	20	2	0	0	0	0.26145	1	248	248		2.0598	0.86641	1	46915			38188	6095	22317	22318	46129	46129					0.09380129772944201
RMQMPQGNPLL	11	Unmodified	_RMQMPQGNPLL_					0	0	0		ENSG00000106266|ENST00000222990|SNX8;ENST00000494722.1_1_7:2314657-2354074:-|nuORF	ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.8891296386719	3	428.889892	1283.64785	0.022928	9.8335E-06	-0.78186	-0.00033533	-0.75894	-0.0003255	428.88991393140225	34.037	3.2411	34.037	33.091	36.332	0					219	117	4	0	0	0	0.28001	1	6608	6608		14.218	1.3622	1	1410400			38189	2066	22318	22319	46130	46130					0.01736877567918782
RMRENYLK	8	Unmodified	_RMRENYLK_					0	0	0		ENST00000552876.5_1_12:53714763-53714907:-|nuORF	ENST00000552876.5_1_12:53714763-53714907:-|nuORF	ENST00000552876.5_1_12:53714763-53714907:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7989501953125	2	555.29785	1108.58115	-0.021293	-1.1824E-05	1.0343	0.00057432	1.013	0.0005625	555.7993123431256	27.903	0.69438	27.903	27.615	28.31	0					48	23	3	0	0	0	0.4396	1	4782	4782		9.3831	2.66	1	155560			38190	11814	22319	22320	46131	46131					0.03120010068278134
RMRENYLK	8	Unmodified	_RMRENYLK_					0	0	0		ENST00000552876.5_1_12:53714763-53714907:-|nuORF	ENST00000552876.5_1_12:53714763-53714907:-|nuORF	ENST00000552876.5_1_12:53714763-53714907:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	555.29785	1108.58115	-0.023195	-1.288E-05	0.85269	0.0004735	0.82949	0.00046062	555.2993657455987	27.85	0.73322	27.835	27.534	28.267	-0.015551	-0.0059686	-7.7739E-05	NaN	9.3831	46	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145570			38191	11814	22319	22320							0.03120010068278134
RMRENYLK	8	Unmodified	_RMRENYLK_					0	0	0		ENST00000552876.5_1_12:53714763-53714907:-|nuORF	ENST00000552876.5_1_12:53714763-53714907:-|nuORF	ENST00000552876.5_1_12:53714763-53714907:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	555.29785	1108.58115	-0.15545	-8.6323E-05	0.90387	0.00050192	0.74842	0.0004156	555.7992340853241	27.796	0.70616	27.784	27.469	28.176	-0.011562	-0.056196	-2.0894E-05	NaN	9.3831	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174510			38192	11814	22319	22320							0.03120010068278134
RMSEGLCRKP	10	Unmodified	_RMSEGLCRKP_					0	0	0		ENST00000377102.5_1_13:80913253-80913610:-|nuORF	ENST00000377102.5_1_13:80913253-80913610:-|nuORF	ENST00000377102.5_1_13:80913253-80913610:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.802734375	2	588.802442	1175.59033	0.2556	0.0001505	1.0893	0.0006414	1.3449	0.0007919	588.8030574534121	19.56	0.6654	19.56	19.35	20.016	0					42	23	2	0	0	0	0.41168	1	2304	2304		1.3295	0.72803	1	34290			38193	9929	22320	22321	46132	46132					0.009560353623101037
RMVVLHVE	8	Unmodified	_RMVVLHVE_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.27191162109375	2	491.778762	981.542971	0.444	0.00021835	0.35882	0.00017646	0.80282	0.00039481	491.77900767186236	36.941	0.49148	37.029	36.841	37.332	0.08741					25	17	2	0	0	0	0.34131	1	7508	7508		12.532	4.6214	1	181010	+		38194	15342	22321	22322	46133	46133					0.05146124153634446
RMVVLHVE	8	Unmodified	_RMVVLHVE_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	491.778762	981.542971	0.66705	0.00032804	0.32606	0.00016035	0.99311	0.00048839	491.77917666681543	37.009	0.38314	37.009	36.875	37.259	0	-0.021615	7.9352E-06	NaN	12.532	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119920	+		38195	15342	22321	22322							0.05146124153634446
RMVVLHVE	8	Unmodified	_RMVVLHVE_					0	0	0			REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	REV__nc|ENSG00000127481|Q5T4S7-3|UBR4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.778762	981.542971	0.636	0.00031277	0.27189	0.00013371	0.90789	0.00044648	491.7791301474325	36.96	0.32401	37.053	36.846	37.17	0.093018	0.023038	-4.5346E-05	NaN	12.532	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136800	+		38196	15342	22321	22322							0.05146124153634446
RMWPLKRLI	9	Unmodified	_RMWPLKRLI_					0	0	0			REV__ENST00000444488.1_1_3:188665129-188665324:-|nuORF	REV__ENST00000444488.1_1_3:188665129-188665324:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8724365234375	2	606.873528	1211.7325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.91	1	113.91	113.41	114.41	0								0	0	0	0.2672	1	29572	29572		0.52476	0.21773	1		+		38197	21067	22322	22323	46134	46134					0.13510616166809086
RNAASFKEV	9	Unmodified	_RNAASFKEV_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.27496337890625	2	511.274898	1020.53524	0.38737	0.00019805	0.094979	4.856E-05	0.48235	0.00024661	511.2747800424002	20.49	0.92864	20.49	20.18	21.108	0					122	32	5	0	0	0	0.0073901	2	2566	2514;2566		83.429	33.496	1	1126500			38198	4787	22323	22324	46135;46136	46136					0.0257968815770937
RNAASFKEV	9	Unmodified	_RNAASFKEV_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2750549316406	2	511.274898	1020.53524	0.54154	0.00027688	0.021368	1.0925E-05	0.56291	0.0002878	511.27473205389424	20.684	0.90849	20.574	20.296	21.205	-0.11003					117	31	5	0	0	0	0.011693	4	2622	2572;2622;2666;2711		76.825	34.985	1	1089000			38199	4787	22323	22324	46137;46138;46139;46140	46138					0.0257968815770937
RNAASFKEV	9	Unmodified	_RNAASFKEV_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2750244140625	2	511.274898	1020.53524	0.51716	0.00026441	-0.26528	-0.00013563	0.25187	0.00012878	511.27471654924045	20.581	1.0076	20.528	20.254	21.261	-0.05291					76	35	3	0	0	0	0.013404	4	2578	2527;2578;2628;2677		74.2	32.36	1	1184000			38200	4787	22323	22324	46141;46142;46143;46144	46142					0.0257968815770937
RNAPTPPK	8	Unmodified	_RNAPTPPK_					0	0	0		nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2	nc|ENSG00000143322|P42684-4|ABL2	nc|ENSG00000143322|P42684-4|ABL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.76617431640625	2	440.753601	879.49265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.057	1	12.958	12.458	13.458	-0.099291								0	0	0	0.36486	1	313	313		7.9102	3.1541	1				38201	4500	22324	22325	46145	46145					0.04808337820122688
RNDRNRRLKS	10	Unmodified	_RNDRNRRLKS_					0	0	0			REV__ENST00000609579.1_1_10:52384849-52386526:+|nuORF	REV__ENST00000609579.1_1_10:52384849-52386526:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.932861328125	3	438.920231	1313.73886	-0.22301	-9.7886E-05	3.0104	0.0013213	2.7874	0.0012234	438.9226270768128	28.144	0.48176	28.14	27.851	28.333	-0.0042572					43	16	4	0	0	0	0.32148	1	4796	4796		1.4551	0	1	207640	+		38202	21063	22325	22326	46146	46146					0.09454225651870729
RNGKRITA	8	Unmodified	_RNGKRITA_					0	0	0		ENST00000455810.5_1_10:6624113-6625881:+|nuORF	ENST00000455810.5_1_10:6624113-6625881:+|nuORF	ENST00000455810.5_1_10:6624113-6625881:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7861022949219	2	458.277775	914.540997	-0.26815	-0.00012289	-0.4366	-0.00020009	-0.70475	-0.00032297	458.27759060529706	12.541	0.41933	12.541	12.364	12.783	0					23	13	4	0	0	0	0.34445	1	184	184		0	0	1	291340			38203	10691	22326	22327	46147	46147					0.08030831460018817
RNGQALGLGLS	11	Unmodified	_RNGQALGLGLS_					0	0	0			REV__nc|ENSG00000113504|Q9Y666-2|SLC12A7	REV__nc|ENSG00000113504|Q9Y666-2|SLC12A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.811767578125	2	543.306729	1084.59891	0.68304	0.0003711	2.2558	0.0012256	2.9388	0.0015967	543.8100282535808	26.914	0.75292	26.903	26.513	27.266	-0.01156					67	26	4	0	0	0	0.44523	1	4550	4550		5.2969	0.76802	1	222970	+		38204	22951	22327	22328	46148	46148					0.059990485947992056
RNGYDSESTI	10	Unmodified	_RNGYDSESTI_					0	0	0			REV__LRRCC1|p.Q864Yfs*5|1|0.05|ENSG00000133739|chr8:85138130-85138131|-/TATT|frameshift_variant	REV__LRRCC1|p.Q864Yfs*5|1|0.05|ENSG00000133739|chr8:85138130-85138131|-/TATT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2603149414062	2	571.259642	1140.50473	0.20816	0.00011892	1.2179	0.00069574	1.4261	0.00081466	571.2601739834546	34.234	0.53045	34.234	33.969	34.5	0					30	18	2	0	0	0	0.34795	1	6742	6742		13.042	1.5478	1	242500	+		38205	15634	22328	22329	46149	46149					-0.05990135017987086
RNHFAYYN	8	Unmodified	_RNHFAYYN_					0	0	0		nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-6|AFDN	nc|ENSG00000130396|P55196-6|AFDN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2793579101562	2	542.75159	1083.48863	0.75527	0.00040992	-2.7499	-0.0014925	-1.9946	-0.0010826	542.7497774089032	76.654	0.53746	76.623	76.422	76.96	-0.031479					26	19	2	0	0	0	0.34092	1	19830	19830		13.508	0	1	213320			38206	3473	22329	22330	46150	46150					-0.04977751673595776
RNHLKHRQE	9	Unmodified	_RNHLKHRQE_					0	0	0		ENSG00000169914|ENST00000375120|OTUD3	ENSG00000169914|ENST00000375120|OTUD3	ENSG00000169914|ENST00000375120|OTUD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.2386474609375	3	406.558522	1216.65374	-0.39002	-0.00015857	-0.88734	-0.00036075	-1.2774	-0.00051932	406.55818840696196	14.318	0.2839	14.318	14.164	14.448	0					17	9	2	0	0	0	0.26127	1	712	712		2.7352	1.1429	1	47233			38207	6403	22330	22331	46151	46151					0.054074801860679145
RNIAVDSQLS	10	Unmodified	_RNIAVDSQLS_					0	0	0		ENST00000444012.5_2_2:201171311-201236849:+|nuORF	ENST00000444012.5_2_2:201171311-201236849:+|nuORF	ENST00000444012.5_2_2:201171311-201236849:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2799072265625	2	551.796195	1101.57784	0.25733	0.00014199	-1.1195	-0.00061776	-0.86221	-0.00047576	551.7955035828923	26.486	0.48756	26.486	26.271	26.759	0					39	16	3	0	0	0	0.31207	1	4336	4336		17.443	1.704	1	225170			38208	10571	22331	22332	46152	46152					0.031110384952853565
RNIAVDSQLS	10	Unmodified	_RNIAVDSQLS_					0	0	0		ENST00000444012.5_2_2:201171311-201236849:+|nuORF	ENST00000444012.5_2_2:201171311-201236849:+|nuORF	ENST00000444012.5_2_2:201171311-201236849:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	551.796195	1101.57784	0.51388	0.00028356	-1.3927	-0.0007685	-0.87884	-0.00048494	551.7953719520926	26.535	0.40534	26.513	26.356	26.762	-0.022238	0.031381	-7.0637E-05	NaN	22.658	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253850			38209	10571	22331	22332							0.031110384952853565
RNIGRILGL	9	Unmodified	_RNIGRILGL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3247985839844	2	506.324725	1010.6349	0.60477	0.00030621	-0.36422	-0.00018441	0.24055	0.00012179	506.3244435121117	45.533	0.65414	45.533	45.291	45.945	0					60	23	4	0	0	0	0.037693	1	10191	10191		57.471	27.247	1	1082800			38210	1896	22332	22333	46153	46153					0.13000550562321678
RNIGRILGL	9	Unmodified	_RNIGRILGL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.324725	1010.6349	0.40966	0.00020742	-0.26702	-0.0001352	0.14264	7.2224E-05	506.32451930021597	45.299	0.78045	45.364	45.119	45.9	0.065048	-0.049529	6.8421E-05	NaN	57.471	66	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1183900			38211	1896	22332	22333							0.13000550562321678
RNIHIYTL	8	Unmodified	_RNIHIYTL_					0	0	0		ENST00000537568.1_1_12:16747235-16762728:-|nuORF	ENST00000537568.1_1_12:16747235-16762728:-|nuORF	ENST00000537568.1_1_12:16747235-16762728:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2958984375	2	515.295633	1028.57671	0.30183	0.00015553	0.17305	8.9174E-05	0.47488	0.0002447	515.2956617502916	30.741	1.0278	30.741	30.448	31.476	0					83	36	3	0	0	0	0.37937	1	5738	5738		21.747	0	1	2898200			38212	11691	22333	22334	46154	46154					0.06356868917032443
RNKEKKSVSVT	11	Unmodified	_RNKEKKSVSVT_					0	0	0			REV__ENSG00000087365|ENST00000322535|SF3B2	REV__ENSG00000087365|ENST00000322535|SF3B2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.3743896484375	2	638.372601	1274.73065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.139	1	97.21	96.71	97.71	0.070465								0	0	0	0.36335	1	25988	25988		5.2969	2.3016	1		+		38213	13995	22334	22335	46155	46155					0.10427233891891774
RNKERLPNPH	10	Unmodified	_RNKERLPNPH_					0	0	0			REV__ENSG00000079462|ENST00000262890|PAFAH1B3	REV__ENSG00000079462|ENST00000262890|PAFAH1B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.8500366210938	2	630.849627	1259.6847	0.036274	2.2883E-05	0.68255	0.00043059	0.71882	0.00045347	630.8499546668488	106.69	0.40962	106.68	106.5	106.91	-0.0060501					130	61	3	0	0	0	0.39935	1	28207	28207		3.5965	0.60125	1	1526000	+		38214	13871	22335	22336	46156	46156					0.06524633500339405
RNKHREAAP	9	Unmodified	_RNKHREAAP_					0	0	0		ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.9852905273438	2	539.796863	1077.57917	0.3028	0.00016345	4.1926	0.0022631	4.4954	0.0024266	540.301215155927	96.984	0.1077	97.054	97.004	97.112	0.070465					14	11	2	0	0	0	0.25526	1	25946	25946		7.9102	1.187	1	81584			38215	6756	22336	22337	46157	46157					0.04348717374705302
RNKQWYEK	8	Unmodified	_RNKQWYEK_					0	0	0			REV__nc|ENSG00000186399|I6L899-2|GOLGA8R	REV__nc|ENSG00000186399|I6L899-2|GOLGA8R	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.2537231445312	2	576.301447	1150.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.093	1	21.093	20.593	21.593	0								0	0	0	0.37724	1	2737	2737		2.3027	0	1		+		38216	18018	22337	22338	46158	46158					0.019070659403496393
RNKRQRRR	8	Unmodified	_RNKRQRRR_					0	0	0			REV__nc|ENSG00000196504|O75400-2|PRPF40A	REV__nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8135986328125	2	585.36357	1168.71259	0.46513	0.00027227	0.73418	0.00042976	1.1993	0.00070203	585.3638655789705	90.155	0.90063	90.156	89.676	90.576	0.00039673					131	72	2	0	0	0	0.34437	1	23919	23919		0.69038	0	1	166690	+		38217	18657	22338	22339	46159	46159					0.1349800127106846
RNKSFELQTR	10	Unmodified	_RNKSFELQTR_					0	0	0			REV__ENST00000528800.2_1_8:70746371-70748903:+|nuORF	REV__ENST00000528800.2_1_8:70746371-70748903:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.860595703125	3	426.901954	1277.68403	-0.11225	-4.7919E-05	-0.17052	-7.2796E-05	-0.28277	-0.00012071	426.90195916919697	24.967	0.92733	24.967	24.486	25.413	0					73	31	3	0	0	0	0.32153	1	3783	3783		1.3296	0.36737	1	222410	+		38218	21708	22339	22340	46160	46160					0.05629794060610038
RNKSFELQTR	10	Unmodified	_RNKSFELQTR_					0	0	0			REV__ENST00000528800.2_1_8:70746371-70748903:+|nuORF	REV__ENST00000528800.2_1_8:70746371-70748903:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	426.901954	1277.68403	-0.41668	-0.00017788	-0.067174	-2.8677E-05	-0.48385	-0.00020656	426.90201422430965	25.03	0.8635	24.999	24.515	25.378	-0.031408	0.016002	7.5206E-05	NaN	0.45452	81	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185440	+		38219	21708	22339	22340							0.05629794060610038
RNLEQVLRLLN	11	Unmodified	_RNLEQVLRLLN_					0	0	0		ENSG00000164118|ENST00000503780|CEP44;nc|ENSG00000164118|Q9C0F1-2|CEP44	ENSG00000164118|ENST00000503780|CEP44	ENSG00000164118|ENST00000503780|CEP44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7924499511719	3	456.60877	1366.80448	-1.4066	-0.00064224	-0.17364	-7.9284E-05	-1.5802	-0.00072153	456.6085322845904	34.827	0.5257	34.827	34.618	35.144	0					34	18	3	0	0	0	0.32951	1	6946	6946		10.315	4.4471	1	180880			38220	5794	22340	22341	46161	46161					0.13575202054244073
RNLINVRIVGE	11	Unmodified	_RNLINVRIVGE_					0	0	0		ENST00000592904.5_1_19:9524750-9525065:-|nuORF	ENST00000592904.5_1_19:9524750-9525065:-|nuORF	ENST00000592904.5_1_19:9524750-9525065:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.3848876953125	2	641.883136	1281.75172	0.33589	0.0002156	-0.9035	-0.00057994	-0.56761	-0.00036434	641.882430388857	96.394	0.58043	96.472	96.248	96.828	0.077415					94	58	2	0	0	0	0.47649	1	25848	25848		1.1933	0	1	179320			38221	12204	22341	22342	46162	46162					0.12211243991396259
RNLKWKHF	8	Unmodified	_RNLKWKHF_					0	0	0		ENST00000426643.1_1_6:32359408-32361305:+|nuORF	ENST00000426643.1_1_6:32359408-32361305:+|nuORF	ENST00000426643.1_1_6:32359408-32361305:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.322998046875	2	564.824892	1127.63523	-0.087939	-4.967E-05	-1.075	-0.00060716	-1.1629	-0.00065683	564.8241978472424	12.142	0.20124	12.142	12.018	12.219	0					23	9	3	0	0	0	0.344	1	30	30		2.5775	0	1	104140			38222	10420	22342	22343	46163	46163					0.07651970282154252
RNLKWKHF	8	Unmodified	_RNLKWKHF_					0	0	0		ENST00000426643.1_1_6:32359408-32361305:+|nuORF	ENST00000426643.1_1_6:32359408-32361305:+|nuORF	ENST00000426643.1_1_6:32359408-32361305:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3231811523438	2	564.824892	1127.63523	0.10578	5.9749E-05	-0.86497	-0.00048856	-0.75919	-0.00042881	564.8244235273122	12.138	0.32393	12.041	11.912	12.236	-0.096607					26	13	3	0	0	0	0.34337	1	34	34		5.2307	0.90143	1	113820			38223	10420	22342	22343	46164	46164					0.07651970282154252
RNLKWKHF	8	Unmodified	_RNLKWKHF_					0	0	0		ENST00000426643.1_1_6:32359408-32361305:+|nuORF	ENST00000426643.1_1_6:32359408-32361305:+|nuORF	ENST00000426643.1_1_6:32359408-32361305:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.3230590820312	2	564.824892	1127.63523	-0.17773	-0.00010039	-1.2567	-0.00070984	-1.4345	-0.00081023	564.8241731803172	12.115	0.2165	12.047	11.951	12.167	-0.06806					24	10	3	0	0	0	0.34337	1	30	30		5.2307	0.90143	1	81061			38224	10420	22342	22343	46165	46165					0.07651970282154252
RNLPVLKR	8	Unmodified	_RNLPVLKR_					0	0	0		ENST00000481448.5_1_21:35897726-35897813:-|nuORF	ENST00000481448.5_1_21:35897726-35897813:-|nuORF	ENST00000481448.5_1_21:35897726-35897813:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2671813964844	2	498.327268	994.639983	0.18368	9.1534E-05	-0.86059	-0.00042886	-0.67691	-0.00033732	498.32663558981346	17.564	0.28473	17.447	17.289	17.573	-0.11739					13	9	2	0	0	0	0.34437	1	1661	1661		0.69038	0	1	17660			38225	11032	22343	22344	46166	46166					0.1424485442493051
RNLPVLKR	8	Unmodified	_RNLPVLKR_					0	0	0		ENST00000481448.5_1_21:35897726-35897813:-|nuORF	ENST00000481448.5_1_21:35897726-35897813:-|nuORF	ENST00000481448.5_1_21:35897726-35897813:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.327268	994.639983	0.32639	0.00016265	-0.3517	-0.00017526	-0.025303	-1.2609E-05	498.3269345007391	17.537	0.26172	17.476	17.298	17.56	-0.060429	0.014714	0.00012438	NaN	2.3027	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24514			38226	11032	22343	22344							0.1424485442493051
RNNIQMVVH	9	Unmodified	_RNNIQMVVH_					0	0	0		ENST00000536163.5_2_7:141360786-141361083:-|nuORF	ENST00000536163.5_2_7:141360786-141361083:-|nuORF	ENST00000536163.5_2_7:141360786-141361083:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7963256835938	2	555.795475	1109.5764	0.10205	5.6718E-05	0.42797	0.00023787	0.53002	0.00029458	555.7961033230378	114.68	0.12815	114.66	114.62	114.75	-0.019096					13	13	2	0	0	0	0.34536	1	29772	29772		2.0598	0.57785	1	14509			38227	11680	22344	22345	46167	46167					0.02599125925530643
RNNIQMVVH	9	Unmodified	_RNNIQMVVH_					0	0	0		ENST00000536163.5_2_7:141360786-141361083:-|nuORF	ENST00000536163.5_2_7:141360786-141361083:-|nuORF	ENST00000536163.5_2_7:141360786-141361083:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	555.795475	1109.5764	0.19929	0.00011076	1.1749	0.00065302	1.3742	0.00076378	555.796383371	114.69	0.049988	114.71	114.67	114.72	0.016708	0.025547	0.00052201	NaN	2.0598	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24701			38228	11680	22344	22345							0.02599125925530643
RNNQRKAK	8	Unmodified	_RNNQRKAK_					0	0	0		ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	ENST00000496059.1_1_2:37364124-37368826:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.75933837890625	2	507.799406	1013.58426	0.12633	6.415E-05	1.5757	0.00080014	1.702	0.00086429	507.80008217077335	24.589	1.0481	24.558	23.973	25.021	-0.031408					61	35	2	0	0	0	0.34167	1	3728	3728		7.2892	0	1	191980			38229	704	22345	22346	46168	46168					0.07801021237321493
RNPAVSKL	8	Unmodified	_RNPAVSKL_					0	0	0			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.76885986328125	2	442.769252	883.52395	-0.053719	-2.3785E-05	0.2137	9.462E-05	0.15998	7.0834E-05	442.76908809873686	17.723	0.5974	17.606	17.441	18.038	-0.11739					38	20	3	0	0	0	0.42077	1	1720	1720		15.847	0	1	83235	+		38230	13908	22346	22347	46169	46169					0.07752910854230777
RNPLTCIS	8	Unmodified	_RNPLTCIS_					0	0	0		ENST00000565488.5_1_1:108678414-108678705:-|nuORF	ENST00000565488.5_1_1:108678414-108678705:-|nuORF	ENST00000565488.5_1_1:108678414-108678705:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.23016357421875	2	452.23947	902.464386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.577	1	19.577	19.077	20.077	0								0	0	0	0.37183	1	2276	2276		4.756	0	1				38231	11964	22347	22348	46170	46170					0.009252718485413425
RNPQQRLRWWR	11	Unmodified	_RNPQQRLRWWR_					0	0	0		ENST00000519528.1_1_8:103299768-103305927:-|nuORF	ENST00000519528.1_1_8:103299768-103305927:-|nuORF	ENST00000519528.1_1_8:103299768-103305927:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7681884765625	3	532.630791	1594.87055	0.14109	7.5147E-05	-0.83504	-0.00044477	-0.69395	-0.00036962	532.9650225912592	112.27	0.27348	112.25	112.2	112.47	-0.015625					33	32	2	0	0	0	0.48486	1	29246	29246		0.094841	0	1	51471			38232	11459	22348	22349	46171	46171					0.09690455739632853
RNQKLQIRLAL	11	Unmodified	_RNQKLQIRLAL_					0	0	0		ENST00000432587.6_1_1:168014203-168014425:+|nuORF	ENST00000432587.6_1_1:168014203-168014425:+|nuORF	ENST00000432587.6_1_1:168014203-168014425:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2886962890625	3	451.62101	1351.8412	-0.16154	-7.2956E-05	-2.3914	-0.00108	-2.5529	-0.001153	451.9542609321999	12.8	0.20101	12.8	12.724	12.925	0					8	6	2	0	0	0	0.3333	1	213	213		0.45452	0	1	15948			38233	10482	22349	22350	46172	46172					0.1793549867081765
RNQLTSLPV	9	Unmodified	_RNQLTSLPV_					0	0	0		ENST00000488221.5_1_17:18156710-18157010:-|nuORF	ENST00000488221.5_1_17:18156710-18157010:-|nuORF	ENST00000488221.5_1_17:18156710-18157010:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2982177734375	2	514.298373	1026.58219	0.37423	0.00019247	0.091438	4.7027E-05	0.46567	0.00023949	514.2982655319071	86.204	1.0716	86.195	85.791	86.863	-0.0090103					100	41	3	0	0	0	0.31417	1	22765	22765		6.7232	6.7232	1	1469900			38234	11134	22350	22351	46173	46173					0.06996547708831713
RNQMIKREK	9	Unmodified	_RNQMIKREK_					0	0	0			REV__ENST00000371753.5_1_9:138898823-138899147:-|nuORF	REV__ENST00000371753.5_1_9:138898823-138899147:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8409423828125	2	601.842956	1201.67136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.915	1	24.915	24.415	25.415	0								0	0	0	0.25955	1	3894	3894		3.2813	0.54611	1		+		38235	20404	22351	22352	46174	46174					0.07859059396719204
RNQPNTALL	9	Unmodified	_RNQPNTALL_					0	0	0		ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.787841796875	2	513.788173	1025.56179	0.05135	2.6383E-05	-0.22489	-0.00011555	-0.17354	-8.9165E-05	513.788033274153	17.094	0.82308	16.977	16.692	17.515	-0.11739					78	29	3	0	0	0	0.31417	1	1634	1634		6.7232	0	1	1078500			38236	2594	22352	22353	46175	46175					0.05003377049024493
RNRIGVGVI	9	Unmodified	_RNRIGVGVI_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.3088073730469	2	492.309075	982.603597	0.12879	6.3405E-05	0.10274	5.0579E-05	0.23153	0.00011398	492.30891568864394	25.766	0.44525	25.744	25.524	25.97	-0.022236					34	15	3	0	0	0	0.28128	1	4125	4125		11.64	0	1	239460			38237	1147	22353	22354	46176	46176					0.1115997752824569
RNRNSFKLSR	10	Unmodified	_RNRNSFKLSR_					0	0	0		ENST00000489895.5_1_3:52514938-52524786:+|nuORF;nc|ENSG00000010322|Q9Y2I1-2|NISCH;ENSG00000010322|ENST00000345716|NISCH	ENST00000489895.5_1_3:52514938-52524786:+|nuORF	ENST00000489895.5_1_3:52514938-52524786:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	639.8658447265625	2	639.362902	1276.71125	-0.043956	-2.8104E-05	0.52648	0.00033661	0.48253	0.00030851	639.3627825252689	106.68	0.41026	106.68	106.51	106.92	0					107	63	3	0	0	0	0.39935	2	28169	28169;28171		3.5965	2.1146	1	1510200			38238	422	22354	22355	46177;46178	46177					0.08396322391649846
RNRNSFKLSR	10	Unmodified	_RNRNSFKLSR_					0	0	0		ENST00000489895.5_1_3:52514938-52524786:+|nuORF;nc|ENSG00000010322|Q9Y2I1-2|NISCH;ENSG00000010322|ENST00000345716|NISCH	ENST00000489895.5_1_3:52514938-52524786:+|nuORF	ENST00000489895.5_1_3:52514938-52524786:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	639.3623046875	2	639.362902	1276.71125	0.29537	0.00018885	0.43978	0.00028118	0.73516	0.00047003	639.3626271451666	106.69	0.30934	106.68	106.5	106.81	-0.0060425					83	45	3	0	0	0	0.39935	1	28185	28185		3.5965	0.31518	1	1336700			38239	422	22354	22355	46179	46179					0.08396322391649846
RNRRLQSP	8	Unmodified	_RNRRLQSP_					0	0	0			REV__ENST00000491999.5_1_16:692165-696516:+|nuORF	REV__ENST00000491999.5_1_16:692165-696516:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7996826171875	2	513.799406	1025.58426	-0.097544	-5.0118E-05	1.2189	0.00062627	1.1214	0.00057615	513.7996821525601	14.142	0.28237	14.038	13.903	14.185	-0.10466					15	9	3	0	0	0	0.44885	1	643	643		6.2058	0	1	111310	+		38240	21620	22355	22356	46180	46180					0.0724902123731681
RNRVKRRLD	9	Unmodified	_RNRVKRRLD_					0	0	0		ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8723754882812	2	606.873437	1211.73232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.23	1	115.21	114.71	115.71	-0.020988								0	0	0	0.26704	1	29888	29888		0.6015	0	1				38241	4519	22356	22357	46181	46181					0.13492332491182424
RNSCIHWEL	9	Unmodified	_RNSCIHWEL_					0	0	0			REV__ENSG00000179292|ENST00000327259|TMEM151A	REV__ENSG00000179292|ENST00000327259|TMEM151A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.2648315429688	2	579.279657	1156.54476	0.17534	0.00010157	-0.8463	-0.00049024	-0.67096	-0.00038867	579.2792256292819	26.912	1.031	26.912	26.499	27.53	0					77	31	3	0	0	0	0.33276	1	4621	4621		3.9444	0.3479	1	217180	+		38242	18067	22357	22358	46182	46182					-0.027248668284300948
RNSLSHPP	8	Unmodified	_RNSLSHPP_					0	0	0		ENSG00000185070|ENST00000330753|FLRT2	ENSG00000185070|ENST00000330753|FLRT2	ENSG00000185070|ENST00000330753|FLRT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.717041015625	2	454.240858	906.467164	0.12814	5.8205E-05	2.4961	0.0011338	2.6243	0.0011921	454.2419819488968	80.417	0.52952	80.417	80.177	80.707	0					30	19	2	0	0	0	0.34319	1	20958	20958		2.5775	0	1	166920			38243	7505	22358	22359	46183	46183					0.010188632977019552
RNSRSLYLE	9	Unmodified	_RNSRSLYLE_					0	0	0		ENST00000551592.5_1_12:48474253-48490186:-|nuORF;ENST00000547181.5_1_12:48482540-48495255:-|nuORF;SENP1|p.L366Wfs*21|1|0.29|ENSG00000079387|chr12:48065618-48065618|A/-|frameshift_variant;nc|ENSG00000079387|Q9P0U3-2|SENP1;ENSG00000079387|ENST00000549518|SENP1	ENST00000551592.5_1_12:48474253-48490186:-|nuORF	ENST00000551592.5_1_12:48474253-48490186:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.3041381835938	2	569.304187	1136.59382	0.42748	0.00024336	-0.30661	-0.00017455	0.12087	6.881E-05	569.3039369504843	19.923	0.60358	19.867	19.595	20.199	-0.055693					49	21	3	0	0	0	0.34809	1	2448	2448		1.6526	1.6526	1	308180			38244	1132	22359	22360	46184	46184					0.030987447321649597
RNTFSLNVK	9	Unmodified	_RNTFSLNVK_					0	0	0			REV__ENSG00000125409|ENST00000395930|TEKT3	REV__ENSG00000125409|ENST00000395930|TEKT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8037719726562	2	539.803823	1077.59309	0.075731	4.088E-05	-0.71803	-0.00038759	-0.6423	-0.00034671	539.8037386114014	106.67	0.14041	106.67	106.62	106.76	0					42	20	3	0	0	0	0.31763	1	28181	28181		6.2058	0.97511	1	1826300	+		38245	15264	22360	22361	46185	46185					0.057399500831252226
RNTFSLNVK	9	Unmodified	_RNTFSLNVK_					0	0	0			REV__ENSG00000125409|ENST00000395930|TEKT3	REV__ENSG00000125409|ENST00000395930|TEKT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8035278320312	2	539.803823	1077.59309	0.23889	0.00012895	-0.40707	-0.00021974	-0.16818	-9.0784E-05	539.8036985307261	106.69	0.09787	106.68	106.64	106.74	-0.0060425					29	13	3	0	0	0	0.31763	1	28197	28197		6.2058	1.6769	1	1755700	+		38246	15264	22360	22361	46186	46186					0.057399500831252226
RNTFSLNVK	9	Unmodified	_RNTFSLNVK_					0	0	0			REV__ENSG00000125409|ENST00000395930|TEKT3	REV__ENSG00000125409|ENST00000395930|TEKT3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	539.803823	1077.59309	0.075731	4.088E-05	-0.71803	-0.00038759	-0.6423	-0.00034671	539.8037386114014	106.67	0.14041	106.67	106.62	106.76	0	-0.0057355	-0.00027688	NaN	6.2058	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1826300	+		38247	15264	22360	22361							0.057399500831252226
RNTFSLNVK	9	Unmodified	_RNTFSLNVK_					0	0	0			REV__ENSG00000125409|ENST00000395930|TEKT3	REV__ENSG00000125409|ENST00000395930|TEKT3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	539.803823	1077.59309	0.23889	0.00012895	-0.40707	-0.00021974	-0.16818	-9.0784E-05	539.8036985307261	106.69	0.09787	106.68	106.64	106.74	-0.0060425	0.002334	5.8837E-05	NaN	6.2058	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1755700	+		38248	15264	22360	22361							0.057399500831252226
RNTFSLNVK	9	Unmodified	_RNTFSLNVK_					0	0	0			REV__ENSG00000125409|ENST00000395930|TEKT3	REV__ENSG00000125409|ENST00000395930|TEKT3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	539.803823	1077.59309	0.47865	0.00025837	-0.47211	-0.00025485	0.0065349	3.5276E-06	539.8035882491897	106.68	0.11402	106.68	106.63	106.74	0.0050507	0.0034015	-1.1384E-05	NaN	6.2058	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1843900	+		38249	15264	22360	22361							0.057399500831252226
RNTIYPQQF	9	Unmodified	_RNTIYPQQF_					0	0	0			REV__ENSG00000127318|ENST00000538666|IL22	REV__ENSG00000127318|ENST00000538666|IL22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.802001953125	2	583.80128	1165.58801	0.18963	0.00011071	0.2962	0.00017292	0.48584	0.00028363	583.8013704071411	33.026	0.5294	33.081	32.84	33.369	0.055309					43	18	3	0	0	0	0.28674	1	6400	6400		10.824	1.4408	1	403900	+		38250	15335	22361	22362	46187	46187					0.011836462205110365
RNTLVAIVV	9	Unmodified	_RNTLVAIVV_					0	0	0		ENSG00000141756|ENST00000321562|FKBP10	ENSG00000141756|ENST00000321562|FKBP10	ENSG00000141756|ENST00000321562|FKBP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8137512207031	2	492.813659	983.612765	0.60562	0.00029846	0.33816	0.00016665	0.94379	0.00046511	492.8136474551497	55.208	0.72206	55.279	55.055	55.777	0.070885					50	26	2	0	0	0	0.20626	1	13143	13143		22.736	4.5899	1	1689400			38251	4411	22362	22363	46188	46188					0.12030326093884014
RNTLVAIVV	9	Unmodified	_RNTLVAIVV_					0	0	0		ENSG00000141756|ENST00000321562|FKBP10	ENSG00000141756|ENST00000321562|FKBP10	ENSG00000141756|ENST00000321562|FKBP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.813720703125	2	492.813659	983.612765	0.57138	0.00028158	-0.064396	-3.1735E-05	0.50698	0.00024985	492.81347199477364	55.258	1.1202	55.239	54.678	55.798	-0.019077					85	41	3	0	0	0	0.13748	1	13175	13175		32.786	0	1	1750800			38252	4411	22362	22363	46189	46189					0.12030326093884014
RNTYNQTAL	9	Unmodified	_RNTYNQTAL_					0	0	0		nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2	nc|ENSG00000177303|Q8WXE0-2|CASKIN2	nc|ENSG00000177303|Q8WXE0-2|CASKIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2340698242188	2	540.775262	1079.53597	0.2931	0.0001585	-0.912	-0.00049319	-0.6189	-0.00033469	540.7748039236246	18.662	0.46734	18.545	18.267	18.734	-0.11739					26	15	2	0	0	0	0.25988	1	2052	2052		3.9444	1.2092	1	53537			38253	6977	22363	22364	46190	46190					-0.0006151719326226157
RNVPVRDI	8	Unmodified	_RNVPVRDI_					0	0	0		ENSG00000070366|ENST00000263073|SMG6;nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6;ENST00000573153.5_1_17:1964788-1969297:-|nuORF;ENST00000574501.1_1_17:1964788-1964956:-|nuORF	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7855224609375	2	484.785433	967.556313	0.16086	7.798E-05	0.16323	7.9134E-05	0.32409	0.00015711	484.78567659443564	17.798	0.69866	17.738	17.414	18.113	-0.060429					39	24	2	0	0	0	0.46092	1	1762	1762		2.0598	0	1	91211			38254	921	22364	22365	46191	46191					0.07123698257237265
RNVRLLEEKLL	11	Unmodified	_RNVRLLEEKLL_					0	0	0			REV__ENSG00000177000|ENST00000376590|MTHFR	REV__ENSG00000177000|ENST00000376590|MTHFR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.62078857421875	3	461.620788	1381.84053	0.2667	0.00012312	-0.057371	-2.6484E-05	0.20933	9.6632E-05	461.62074838442174	44.866	0.62259	44.866	44.552	45.175	0					42	22	2	0	0	0	0.44088	1	9987	9987		5.8681	1.7515	1	1137000	+		38255	17966	22365	22366	46192	46192					0.16488659231072234
RNWRILFVMRR	11	Unmodified	_RNWRILFVMRR_					0	0	0		ENST00000502537.1_1_4:86863224-86863332:+|nuORF	ENST00000502537.1_1_4:86863224-86863332:+|nuORF	ENST00000502537.1_1_4:86863224-86863332:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7850341796875	3	516.301506	1545.88269	-0.68782	-0.00035512	-0.093506	-4.8277E-05	-0.78132	-0.0004034	516.30135591276	34.539	0.56118	34.539	34.306	34.868	0					31	19	2	0	0	0	0.33351	1	6820	6820		0.094841	0	1	226950			38256	11276	22366	22367	46193	46193					0.13158356158442075
RNWRILFVMRR	11	Unmodified	_RNWRILFVMRR_					0	0	0		ENST00000502537.1_1_4:86863224-86863332:+|nuORF	ENST00000502537.1_1_4:86863224-86863332:+|nuORF	ENST00000502537.1_1_4:86863224-86863332:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	516.301506	1545.88269	-0.38461	-0.00019857	-2.0394	-0.001053	-2.424	-0.0012515	516.3006575353761	34.607	0.1958	34.685	34.533	34.729	0.077377	0.072822	-0.0022515	NaN	0.094841	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95132			38257	11276	22366	22367							0.13158356158442075
RNYKRRRRSWR	11	Unmodified	_RNYKRRRRSWR_					0	0	0		ENST00000542829.1_2_13:30002925-30054358:+|nuORF	ENST00000542829.1_2_13:30002925-30054358:+|nuORF	ENST00000542829.1_2_13:30002925-30054358:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3168334960938	3	545.317207	1632.92979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.35	1	116.33	115.83	116.83	-0.022781								0	0	0	0.3823	1	30143	30143		0	0	1				38258	11735	22367	22368	46194	46194					0.13864351753818482
RNYKRRRRSWR	11	Unmodified	_RNYKRRRRSWR_					0	0	0		ENST00000542829.1_2_13:30002925-30054358:+|nuORF	ENST00000542829.1_2_13:30002925-30054358:+|nuORF	ENST00000542829.1_2_13:30002925-30054358:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3174438476562	3	545.317207	1632.92979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.48	1	116.46	115.96	116.96	-0.022781								0	0	0	0.3823	1	30175	30175		0	0	1				38259	11735	22367	22368	46195	46195					0.13864351753818482
RNYKRRRRSWR	11	Unmodified	_RNYKRRRRSWR_					0	0	0		ENST00000542829.1_2_13:30002925-30054358:+|nuORF	ENST00000542829.1_2_13:30002925-30054358:+|nuORF	ENST00000542829.1_2_13:30002925-30054358:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.316650390625	3	545.317207	1632.92979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.09	1	118.07	117.57	118.57	-0.024147								0	0	0	0.3823	1	30542	30542		0	0	1				38260	11735	22367	22368	46196	46196					0.13864351753818482
RPAAGFVAGL	10	Unmodified	_RPAAGFVAGL_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7774658203125	2	479.777077	957.5396	0.44333	0.0002127	-0.33132	-0.00015896	0.11201	5.374E-05	479.7772519905041	47.913	1.1146	47.913	47.244	48.358	0					63	39	2	0	0	0	0.017063	2	10908	10908;10960		74.929	36.955	1	2438400			38261	4390	22368	22369	46197;46198	46197					0.05913197371273782
RPAAGFVAGL	10	Unmodified	_RPAAGFVAGL_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7781066894531	2	479.777077	957.5396	0.641	0.00030754	0.013652	6.5497E-06	0.65465	0.00031409	479.77716869860893	47.859	0.74466	47.906	47.646	48.39	0.047523					44	27	2	0	0	0	0.017063	2	10908	10908;10928		74.929	45.847	1	2531800			38262	4390	22368	22369	46199;46200	46199					0.05913197371273782
RPAAGFVAGL	10	Unmodified	_RPAAGFVAGL_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.77734375	2	479.777077	957.5396	0.47967	0.00023013	0.15662	7.5142E-05	0.63629	0.00030528	479.7772285036872	47.835	0.82127	47.878	47.637	48.458	0.04332					49	30	2	0	0	0	0.062954	2	10877	10877;10930		56.177	30.778	1	1790200			38263	4390	22368	22369	46201;46202	46201					0.05913197371273782
RPAAIPIEI	9	Unmodified	_RPAAIPIEI_					0	0	0		ENSG00000211455|ENST00000389032|STK38L;nc|ENSG00000211455|Q9Y2H1-2|STK38L;ENST00000536093.5_3_12:27468169-27475385:+|nuORF	ENSG00000211455|ENST00000389032|STK38L	ENSG00000211455|ENST00000389032|STK38L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.30108642578125	2	490.300384	978.586216	0.36889	0.00018087	0.7375	0.0003616	1.1064	0.00054246	490.30059235063067	55.6	0.64213	55.581	55.349	55.991	-0.019077					49	23	4	0	0	0	0.17277	1	13269	13269		27.629	11.782	1	774710			38264	8327	22369	22370	46203	46203					0.09606637202557522
RPAAIPIEI	9	Unmodified	_RPAAIPIEI_					0	0	0		ENSG00000211455|ENST00000389032|STK38L;nc|ENSG00000211455|Q9Y2H1-2|STK38L;ENST00000536093.5_3_12:27468169-27475385:+|nuORF	ENSG00000211455|ENST00000389032|STK38L	ENSG00000211455|ENST00000389032|STK38L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	490.300384	978.586216	0.34605	0.00016967	0.31355	0.00015374	0.6596	0.0003234	490.3003429944706	55.556	0.58953	55.556	55.374	55.963	0	-0.020416	0.00017886	NaN	27.629	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	589980			38265	8327	22369	22370							0.09606637202557522
RPAAIPIEI	9	Unmodified	_RPAAIPIEI_					0	0	0		ENSG00000211455|ENST00000389032|STK38L;nc|ENSG00000211455|Q9Y2H1-2|STK38L;ENST00000536093.5_3_12:27468169-27475385:+|nuORF	ENSG00000211455|ENST00000389032|STK38L	ENSG00000211455|ENST00000389032|STK38L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	490.300384	978.586216	0.55678	0.00027299	-0.38402	-0.00018829	0.17276	8.4703E-05	490.30011749570417	55.522	0.50645	55.593	55.398	55.905	0.070885	0.016016	-0.00050519	NaN	27.629	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	654870			38266	8327	22369	22370							0.09606637202557522
RPAAIRQLL	9	Unmodified	_RPAAIRQLL_					0	0	0			REV__L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|13|1|sense	REV__L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|13|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.3325805664062	2	519.33255	1036.65055	0.60714	0.00031531	-0.36844	-0.00019134	0.2387	0.00012396	519.332300998745	36.802	0.83488	36.802	36.479	37.314	0					73	29	3	0	0	0	0.068501	3	7525	7525;7537;7572		46.021	4.1813	1	1270800	+		38267	22819	22370	22371	46204;46205;46206	46204					0.13368837079360674
RPAAIRQLL	9	Unmodified	_RPAAIRQLL_					0	0	0			REV__L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|13|1|sense	REV__L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|13|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3326416015625	2	519.33255	1036.65055	0.45952	0.00023864	-0.3016	-0.00015663	0.15792	8.2012E-05	519.3323527308627	36.654	0.95536	36.741	36.403	37.358	0.08741					82	34	4	0	0	0	0.14076	1	7533	7533		32.305	3.2239	1	1215000	+		38268	22819	22370	22371	46207	46207					0.13368837079360674
RPAAISIEI	9	Unmodified	_RPAAISIEI_					0	0	0		ENSG00000112079|ENST00000229812|STK38	ENSG00000112079|ENST00000229812|STK38	ENSG00000112079|ENST00000229812|STK38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8004150390625	2	485.290017	968.565481	0.20393	9.8965E-05	0.30466	0.00014785	0.50859	0.00024681	485.2904449198851	52.167	0.6098	52.167	51.885	52.494	0					48	21	4	0	0	0	0.088443	1	12223	12223		39.95	5.548	1	581060			38269	2410	22371	22372	46208	46208					0.07994046822898326
RPAAISIEI	9	Unmodified	_RPAAISIEI_					0	0	0		ENSG00000112079|ENST00000229812|STK38	ENSG00000112079|ENST00000229812|STK38	ENSG00000112079|ENST00000229812|STK38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80029296875	2	485.290017	968.565481	0.26553	0.00012886	0.58878	0.00028573	0.8543	0.00041458	485.29060735889874	52.121	0.59419	52.171	51.9	52.494	0.050575					39	21	3	0	0	0	0.10059	1	12225	12225		38.176	3.7738	1	611260			38270	2410	22371	22372	46209	46209					0.07994046822898326
RPAAISIEI	9	Unmodified	_RPAAISIEI_					0	0	0		ENSG00000112079|ENST00000229812|STK38	ENSG00000112079|ENST00000229812|STK38	ENSG00000112079|ENST00000229812|STK38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8004455566406	2	485.290017	968.565481	0.10011	4.8582E-05	0.53422	0.00025925	0.63433	0.00030783	485.2905614781054	52.206	0.54121	52.205	51.928	52.469	-0.00080872					47	19	3	0	0	0	0.19083	2	12233	12233;12296		24.991	3.454	1	536690			38271	2410	22371	22372	46210;46211	46210					0.07994046822898326
RPAALFLTL	9	Unmodified	_RPAALFLTL_					0	0	0		nc|ENSG00000172322|Q5QGZ9-3|CLEC12A;ENST00000449959.6_1_12:10124132-10131716:+|nuORF;nc|ENSG00000172322|Q5QGZ9-5|CLEC12A;ENSG00000172322|ENST00000304361|CLEC12A;nc|ENSG00000172322|Q5QGZ9-1|CLEC12A	nc|ENSG00000172322|Q5QGZ9-3|CLEC12A	nc|ENSG00000172322|Q5QGZ9-3|CLEC12A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.310791015625	2	501.310752	1000.60695	0.36117	0.00018106	-0.18909	-9.4795E-05	0.17208	8.6264E-05	501.310577893341	67.691	0.49104	67.691	67.479	67.97	0					29	16	2	0	0	0	0.12642	2	17009	17009;17072		34.402	5.2372	1	378740			38272	6620	22372	22373	46212;46213	46212					0.10667227582223404
RPAALFLTL	9	Unmodified	_RPAALFLTL_					0	0	0		nc|ENSG00000172322|Q5QGZ9-3|CLEC12A;ENST00000449959.6_1_12:10124132-10131716:+|nuORF;nc|ENSG00000172322|Q5QGZ9-5|CLEC12A;ENSG00000172322|ENST00000304361|CLEC12A;nc|ENSG00000172322|Q5QGZ9-1|CLEC12A	nc|ENSG00000172322|Q5QGZ9-3|CLEC12A	nc|ENSG00000172322|Q5QGZ9-3|CLEC12A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.3106689453125	2	501.310752	1000.60695	0.48454	0.0002429	-0.48799	-0.00024463	-0.0034461	-1.7276E-06	501.3105739841661	67.587	0.56747	67.665	67.408	67.975	0.078041					32	19	2	0	0	0	0.079752	1	16979	16979		41.84	16.44	1	366530			38273	6620	22372	22373	46214	46214					0.10667227582223404
RPAALFLTL	9	Unmodified	_RPAALFLTL_					0	0	0		nc|ENSG00000172322|Q5QGZ9-3|CLEC12A;ENST00000449959.6_1_12:10124132-10131716:+|nuORF;nc|ENSG00000172322|Q5QGZ9-5|CLEC12A;ENSG00000172322|ENST00000304361|CLEC12A;nc|ENSG00000172322|Q5QGZ9-1|CLEC12A	nc|ENSG00000172322|Q5QGZ9-3|CLEC12A	nc|ENSG00000172322|Q5QGZ9-3|CLEC12A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.3109130859375	2	501.310752	1000.60695	0.27397	0.00013735	-0.21961	-0.00011009	0.054359	2.7251E-05	501.31068355442466	67.75	0.5121	67.734	67.478	67.991	-0.016296					30	17	2	0	0	0	0.079752	1	17000	17000		41.84	1.8823	1	353080			38274	6620	22372	22373	46215	46215					0.10667227582223404
RPAALGRLGL	10	Unmodified	_RPAALGRLGL_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2556762695312	2	512.324725	1022.6349	0.28947	0.0001483	-0.024714	-1.2662E-05	0.26476	0.00013564	512.3248793888921	41.797	0.43816	41.797	41.675	42.113	0					34	19	2	0	0	0	0.12589	1	9044	9044		65.235	27.261	1	1688700			38275	2318	22373	22374	46216	46216					0.12448550562328364
RPAALGRLGL	10	Unmodified	_RPAALGRLGL_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2561645507812	2	512.324725	1022.6349	0.17783	9.1106E-05	-0.097725	-5.0067E-05	0.080104	4.1039E-05	512.3247561489999	41.511	0.36435	41.601	41.35	41.715	0.090248					23	14	2	0	0	0	0.2266	1	8919	8919		41.84	9.5341	1	1795600			38276	2318	22373	22374	46217	46217					0.12448550562328364
RPAALRGALL	10	Unmodified	_RPAALRGALL_					0	0	0		ENST00000366855.10_1_6:167369102-167369700:-|nuORF;nc|ENSG00000026297|O00584-2|RNASET2;ENSG00000026297|ENST00000508775|RNASET2;chr6:166956191-166957126|447|15.66|0.4|5.29|-|ENST00000476238|RNASET2,RNASET2	ENST00000366855.10_1_6:167369102-167369700:-|nuORF	ENST00000366855.10_1_6:167369102-167369700:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3325805664062	2	519.33255	1036.65055	0.45952	0.00023864	-0.3016	-0.00015663	0.15792	8.2012E-05	519.3323527308627	36.654	0.95536	36.741	36.403	37.358	0.08741					82	34	4	0	0	0	0.18562	1	7476	7476		34.402	2.0962	1	1215000			38277	173	22374	22375	46218	46218					0.13368837079360674
RPAALRGALLG	11	Unmodified	_RPAALRGALLG_					0	0	0		ENST00000366855.10_1_6:167369102-167369700:-|nuORF;nc|ENSG00000026297|O00584-2|RNASET2;ENSG00000026297|ENST00000508775|RNASET2;chr6:166956191-166957126|447|15.66|0.4|5.29|-|ENST00000476238|RNASET2,RNASET2	ENST00000366855.10_1_6:167369102-167369700:-|nuORF	ENST00000366855.10_1_6:167369102-167369700:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.8427734375	2	547.843282	1093.67201	0.53131	0.00029108	-1.628	-0.00089187	-1.0967	-0.0006008	547.8421269234531	36.276	1.5977	36.276	35.466	37.063	0					68	37	3	0	0	0	0.062755	2	7337	7320;7337		49.554	24.155	1	809250			38278	173	22375	22376	46219;46220	46220					0.12892222108075657
RPAALRGALLG	11	Unmodified	_RPAALRGALLG_					0	0	0		ENST00000366855.10_1_6:167369102-167369700:-|nuORF;nc|ENSG00000026297|O00584-2|RNASET2;ENSG00000026297|ENST00000508775|RNASET2;chr6:166956191-166957126|447|15.66|0.4|5.29|-|ENST00000476238|RNASET2,RNASET2	ENST00000366855.10_1_6:167369102-167369700:-|nuORF	ENST00000366855.10_1_6:167369102-167369700:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	547.843282	1093.67201	0.67875	0.00037185	-1.9042	-0.0010432	-1.2254	-0.00067134	547.8420058044816	36.136	1.5668	36.219	35.598	37.164	0.082355	-0.02958	-2.5703E-05	NaN	49.554	69	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	905880			38279	173	22375	22376							0.12892222108075657
RPAALRLLL	9	Unmodified	_RPAALRLLL_					0	0	0		ENSG00000131477|ENST00000253796|RAMP2;nc|ENSG00000131477|O60895-2|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.8453063964844	2	511.845294	1021.67603	0.36075	0.00018465	-0.21096	-0.00010798	0.14979	7.667E-05	511.8451468956192	51.636	1.0558	51.636	51.327	52.382	0					106	38	4	0	0	0	0.051692	3	12100	12055;12100;12151		52.268	6.2474	1	5408900			38280	3571	22376	22377	46221;46222;46223	46222					0.16606311601799462
RPAALRLLL	9	Unmodified	_RPAALRLLL_					0	0	0		ENSG00000131477|ENST00000253796|RAMP2;nc|ENSG00000131477|O60895-2|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.84521484375	2	511.845294	1021.67603	0.26658	0.00013645	-0.10687	-5.4699E-05	0.15972	8.175E-05	511.8451934482094	51.592	1.0116	51.639	51.321	52.333	0.046574					103	36	4	0	0	0	0.034444	3	12044	12044;12094;12151		58.679	6.4105	1	5815800			38281	3571	22376	22377	46224;46225;46226	46224					0.16606311601799462
RPAALRLLL	9	Unmodified	_RPAALRLLL_					0	0	0		ENSG00000131477|ENST00000253796|RAMP2;nc|ENSG00000131477|O60895-2|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.84527587890625	2	511.845294	1021.67603	0.13872	7.1005E-05	0.050805	2.6005E-05	0.18953	9.701E-05	511.84527363448785	51.712	1.1036	51.722	51.402	52.506	0.0095634					112	40	4	0	0	0	0.051692	3	12118	12068;12118;12170		52.268	6.2474	1	5802000			38282	3571	22376	22377	46227;46228;46229	46228					0.16606311601799462
RPAALTAL	8	Unmodified	_RPAALTAL_					0	0	0		ENSG00000239264|ENST00000379757|TXNDC5	ENSG00000239264|ENST00000379757|TXNDC5	ENSG00000239264|ENST00000379757|TXNDC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.75335693359375	2	406.75307	811.491587	0.26732	0.00010873	0.46181	0.00018784	0.72913	0.00029658	406.7531771144157	37.552	0.69559	37.552	37.285	37.98	0					55	24	3	0	0	0	0.27124	1	7804	7804		34.102	1.797	1	621460			38283	8510	22377	22378	46230	46230					0.07830123451208237
RPAALTAL	8	Unmodified	_RPAALTAL_					0	0	0		ENSG00000239264|ENST00000379757|TXNDC5	ENSG00000239264|ENST00000379757|TXNDC5	ENSG00000239264|ENST00000379757|TXNDC5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	406.75307	811.491587	0.018798	7.6462E-06	0.66957	0.00027235	0.68837	0.00027999	406.75331163711337	37.503	0.78952	37.59	37.218	38.007	0.08741	0.023361	5.122E-05	NaN	34.102	65	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	629300			38284	8510	22377	22378							0.07830123451208237
RPAALTAL	8	Unmodified	_RPAALTAL_					0	0	0		ENSG00000239264|ENST00000379757|TXNDC5	ENSG00000239264|ENST00000379757|TXNDC5	ENSG00000239264|ENST00000379757|TXNDC5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	406.75307	811.491587	0.00044017	1.7904E-07	0.65	0.00026439	0.65044	0.00026457	406.7532718716685	37.465	0.61878	37.558	37.275	37.894	0.093018	-0.0083936	3.53E-05	NaN	34.102	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	821220			38285	8510	22377	22378							0.07830123451208237
RPAANPIQF	9	Unmodified	_RPAANPIQF_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2800598144531	2	507.279983	1012.54541	0.17023	8.6355E-05	0.1244	6.3104E-05	0.29463	0.00014946	507.27994352458916	42.705	1.5726	42.705	42.306	43.878	0					138	57	4	0	0	0	0.012929	3	9350	9306;9350;9446		74.929	42.624	1	3876300			38286	6169	22378	22379	46231;46232;46233	46232					0.039642958829290365
RPAANPIQF	9	Unmodified	_RPAANPIQF_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2799987792969	2	507.279983	1012.54541	0.19225	9.7526E-05	0.067379	3.418E-05	0.25963	0.00013171	507.2799120240036	42.491	1.2878	42.576	42.093	43.381	0.085201					125	46	4	0	0	0	0.012929	3	9255	9209;9255;9304		74.929	33.089	1	3506700			38287	6169	22378	22379	46234;46235;46236	46235					0.039642958829290365
RPAANPIQF	9	Unmodified	_RPAANPIQF_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2800598144531	2	507.279983	1012.54541	0.24627	0.00012493	0.032678	1.6577E-05	0.27894	0.0001415	507.2798910820295	42.407	1.4062	42.498	42.151	43.557	0.091362					128	50	4	0	0	0	0.010453	3	9235	9187;9235;9284		78.728	38.771	1	4157500			38288	6169	22378	22379	46237;46238;46239	46238					0.039642958829290365
RPAAPGQTPL	10	Unmodified	_RPAAPGQTPL_					0	0	0		ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.28521728515625	2	504.285266	1006.55598	0.47102	0.00023753	-0.45419	-0.00022904	0.016829	8.4867E-06	504.2849448345227	29.795	0.50785	29.795	29.58	30.088	0					40	17	3	0	0	0	0.13784	2	5369	5369;5422		40.239	20.982	1	287290			38289	4704	22379	22380	46240;46241	46240					0.0529627853737793
RPAAPGQTPL	10	Unmodified	_RPAAPGQTPL_					0	0	0		ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2849426269531	2	504.285266	1006.55598	0.36115	0.00018212	-0.2022	-0.00010197	0.15895	8.0155E-05	504.2850723912942	29.762	0.67081	29.774	29.532	30.202	0.012266					44	22	3	0	0	0	0.15113	1	5367	5367		38.615	23.366	1	285660			38290	4704	22379	22380	46242	46242					0.0529627853737793
RPAAPGQTPL	10	Unmodified	_RPAAPGQTPL_					0	0	0		ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.28521728515625	2	504.285266	1006.55598	0.070857	3.5732E-05	-0.045131	-2.2759E-05	0.025726	1.2973E-05	504.28507770659826	29.809	0.58184	29.822	29.594	30.176	0.013475					44	19	3	0	0	0	0.19345	2	5367	5367;5424		33.445	19.539	1	268380			38291	4704	22379	22380	46243;46244	46243					0.0529627853737793
RPAAPTPAP	9	Unmodified	_RPAAPTPAP_					0	0	0		ENST00000170168.8_1_19:1828312-1828606:-|nuORF	ENST00000170168.8_1_19:1828312-1828606:-|nuORF	ENST00000170168.8_1_19:1828312-1828606:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.247802734375	2	439.248152	876.481751	-0.18713	-8.2198E-05	-0.33022	-0.00014505	-0.51735	-0.00022724	439.24784868999126	25.782	1.0702	25.743	25.331	26.402	-0.038671					79	37	3	0	0	0	0.23767	1	4168	4168		18.146	0	1	1030800			38292	8786	22380	22381	46245	46245					0.03856935445833187
RPADAIMQKA	10	Unmodified	_RPADAIMQKA_					0	0	0		nc|ENSG00000004866|Q9NRC1|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000489293.5_1_7:116770554-116838385:+|nuORF	nc|ENSG00000004866|Q9NRC1|ST7	nc|ENSG00000004866|Q9NRC1|ST7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.2826538085938	2	550.797683	1099.58081	0.29557	0.0001628	-0.39726	-0.00021881	-0.10169	-5.6011E-05	550.797565532783	25.207	0.66124	25.207	24.93	25.591	0					50	22	3	0	0	0	0.41085	1	4067	4067		1.4819	0.41044	1	113480			38293	318	22381	22382	46246	46246					0.035005903484488954
RPADKRSF	8	Unmodified	_RPADKRSF_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.76953125	2	488.769783	975.525013	0.086251	4.2157E-05	-0.26389	-0.00012898	-0.17764	-8.6825E-05	488.769531153018	23.212	0.91776	23.212	22.969	23.887	0					58	31	3	0	0	0	0.34117	1	3373	3373		13.906	2.2658	1	424820			38294	8657	22382	22383	46247	46247					0.03627125223135863
RPADKRSF	8	Unmodified	_RPADKRSF_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7695617675781	2	488.769783	975.525013	0.30241	0.00014781	-0.36061	-0.00017626	-0.058197	-2.8445E-05	488.76941413037287	23.297	0.98353	23.253	23.06	24.043	-0.044867					64	34	3	0	0	0	0.33661	1	3409	3409		19.257	2.1441	1	368770			38295	8657	22382	22383	46248	46248					0.03627125223135863
RPADPEKNQSL	11	Unmodified	_RPADPEKNQSL_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;NOL11|p.K346Nfs*9|1|0.05|ENSG00000130935|chr17:67736006-67736007|-/TAAAGCCTTATCACTCACT|frameshift_variant;ENST00000580914.1_1_17:65720296-65722769:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.8255004882812	2	627.825483	1253.63641	0.18109	0.00011369	0.03727	2.3399E-05	0.21836	0.00013709	627.8256735922155	19.373	0.72684	19.373	19.095	19.822	0					56	25	4	0	0	0	0.39284	1	2224	2224		12.175	7.2777	1	90571			38296	3527	22383	22384	46249	46249					0.019740950697496373
RPADPEKNQSL	11	Unmodified	_RPADPEKNQSL_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;NOL11|p.K346Nfs*9|1|0.05|ENSG00000130935|chr17:67736006-67736007|-/TAAAGCCTTATCACTCACT|frameshift_variant;ENST00000580914.1_1_17:65720296-65722769:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.8259887695312	2	627.825483	1253.63641	0.047252	2.9666E-05	0.27057	0.00016987	0.31782	0.00019954	627.8258240507697	19.568	0.63546	19.452	19.177	19.812	-0.11592					53	21	4	0	0	0	0.38187	1	2289	2289		13.615	5.4593	1	102370			38297	3527	22383	22384	46250	46250					0.019740950697496373
RPADPEKNQSL	11	Unmodified	_RPADPEKNQSL_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;NOL11|p.K346Nfs*9|1|0.05|ENSG00000130935|chr17:67736006-67736007|-/TAAAGCCTTATCACTCACT|frameshift_variant;ENST00000580914.1_1_17:65720296-65722769:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.8256225585938	2	627.825483	1253.63641	0.21628	0.00013579	0.2823	0.00017724	0.49859	0.00031302	627.8255635594527	19.477	0.67187	19.422	19.144	19.816	-0.055691					45	23	3	0	0	0	0.43842	1	2274	2274		6.1918	2.5954	1	116480			38298	3527	22383	22384	46251	46251					0.019740950697496373
RPADSMLNVL	10	Oxidation (M)	_RPADSM(Oxidation (M))LNVL_		RPADSM(1)LNVL		RPADSM(67)LNVL	0	0	1		ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.294921875	2	566.294973	1130.57539	0.18388	0.00010413	-0.50154	-0.00028402	-0.31766	-0.00017989	566.2949298032889	42.847	1.1664	42.847	42.49	43.656	0					119	42	4	0	0	0	0.024627	2	9328	9328;9377		66.683	37.601	1	2003100			38299	5498	22384	22385	46252;46253	46252		662			0.015328667659787243
RPADSMLNVL	10	Oxidation (M)	_RPADSM(Oxidation (M))LNVL_		RPADSM(1)LNVL		RPADSM(59)LNVL	0	0	1		ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.294921875	2	566.294973	1130.57539	0.26344	0.00014918	-0.41636	-0.00023578	-0.15292	-8.6597E-05	566.2948679202141	42.689	1.1091	42.774	42.352	43.461	0.085197					103	40	4	0	0	0	0.049822	3	9289	9240;9289;9336		59.052	29.971	1	2098400			38300	5498	22384	22385	46254;46255;46256	46255		662			0.015328667659787243
RPADSMLNVL	10	Oxidation (M)	_RPADSM(Oxidation (M))LNVL_		RPADSM(1)LNVL		RPADSM(76)LNVL	0	0	1		ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	ENSG00000160888|ENST00000292433|IER2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.295166015625	2	566.294973	1130.57539	0.13591	7.6963E-05	-0.23652	-0.00013394	-0.10061	-5.6975E-05	566.2949526811717	42.585	1.1573	42.677	42.26	43.417	0.091362					117	41	4	0	0	0	0.016475	2	9262	9262;9307		75.571	46.489	1	1999900			38301	5498	22384	22385	46257;46258	46257		662			0.015328667659787243
RPADYLFML	9	Oxidation (M)	_RPADYLFM(Oxidation (M))L_		RPADYLFM(1)L		RPADYLFM(58)L	0	0	1		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant;ENST00000524119.1_1_8:124031433-124042893:-|nuORF	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2891235351562	2	571.289159	1140.56377	0.25308	0.00014458	-0.30138	-0.00017217	-0.048301	-2.7594E-05	571.2890808690929	66.822	0.82301	66.822	66.545	67.368	0					85	28	4	0	0	0	0.037019	2	16771	16724;16771		57.722	30.838	1	2686800			38302	4020	22385	22386	46259;46260	46260		505			-0.0008933025735586853
RPADYLFML	9	Oxidation (M)	_RPADYLFM(Oxidation (M))L_		RPADYLFM(1)L		RPADYLFM(58)L	0	0	1		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant;ENST00000524119.1_1_8:124031433-124042893:-|nuORF	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2891845703125	2	571.289159	1140.56377	0.35323	0.00020179	-0.57802	-0.00033022	-0.2248	-0.00012842	571.2889914330502	66.721	0.89384	66.805	66.494	67.387	0.083832					83	31	4	0	0	0	0.037019	3	16723	16671;16723;16774		57.722	45.7	1	2819400			38303	4020	22385	22386	46261;46262;46263	46262		505			-0.0008933025735586853
RPADYLFML	9	Oxidation (M)	_RPADYLFM(Oxidation (M))L_		RPADYLFM(1)L		RPADYLFM(58)L	0	0	1		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant;ENST00000524119.1_1_8:124031433-124042893:-|nuORF	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2891845703125	2	571.289159	1140.56377	0.081893	4.6784E-05	-0.22775	-0.00013011	-0.14586	-8.3326E-05	571.2891632265035	66.863	0.88652	66.85	66.539	67.425	-0.013588					76	30	4	0	0	0	0.037019	1	16758	16758		57.722	34.574	1	2725900			38304	4020	22385	22386	46264	46264		505			-0.0008933025735586853
RPAEERLA	8	Unmodified	_RPAEERLA_					0	0	0			REV__nc|ENSG00000120049|Q9NS61-8|KCNIP2	REV__nc|ENSG00000120049|Q9NS61-8|KCNIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2510681152344	2	471.261791	940.509028	-0.1323	-6.2348E-05	-0.14508	-6.8369E-05	-0.27738	-0.00013072	471.26169001373427	24.942	0.58351	24.911	24.653	25.237	-0.031408					50	19	3	0	0	0	0.44389	1	3936	3936		7.9102	7.9102	1	247660	+		38305	15073	22386	22387	46265	46265					0.036394189862335224
RPAEGSRER	9	Unmodified	_RPAEGSRER_					0	0	0		nc|ENSG00000115266|O95996-2|APC2;nc|ENSG00000115266|O95996-3|APC2;ENSG00000115266|ENST00000590469|APC2	nc|ENSG00000115266|O95996-2|APC2	nc|ENSG00000115266|O95996-2|APC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2785034179688	2	529.278503	1056.54245	0.051788	2.741E-05	-0.62857	-0.00033269	-0.57678	-0.00030528	529.2784368152824	12.65	0.38521	12.583	12.406	12.791	-0.067495					27	12	3	0	0	0	0.32371	1	190	190		5.2969	0.066215	1	141440			38306	2626	22387	22388	46266	46266					0.016444207581344017
RPAEKLVTSM	10	Oxidation (M)	_RPAEKLVTSM(Oxidation (M))_		RPAEKLVTSM(1)		RPAEKLVTSM(67)	0	0	1		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.3094482421875	2	574.310623	1146.60669	0.20497	0.00011771	0.27676	0.00015895	0.48173	0.00027666	574.3107046128652	20.102	0.57434	20.102	19.849	20.423	0					51	21	3	0	0	0	0.024627	2	2410	2410;2476		66.683	38.136	1	457070			38307	7911	22388	22389	46267;46268	46267		862			0.03925439800059394
RPAEKLVTSM	10	Oxidation (M)	_RPAEKLVTSM(Oxidation (M))_		RPAEKLVTSM(1)		RPAEKLVTSM(75)	0	0	1		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.3111572265625	2	574.310623	1146.60669	0.52972	0.00030422	-0.12495	-7.1758E-05	0.40477	0.00023247	574.3105138103957	20.342	0.79608	20.232	19.933	20.729	-0.11003					69	28	3	0	0	0	0.017207	2	2524	2481;2524		74.772	41.986	1	434250			38308	7911	22388	22389	46269;46270	46270		862			0.03925439800059394
RPAEKLVTSM	10	Oxidation (M)	_RPAEKLVTSM(Oxidation (M))_		RPAEKLVTSM(1)		RPAEKLVTSM(98)	0	0	1		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.8124389648438	2	574.310623	1146.60669	0.53656	0.00030815	0.098774	5.6727E-05	0.63533	0.00036488	574.310521248844	20.25	0.73145	20.197	19.906	20.638	-0.052912					58	26	3	0	0	0	0.0039563	2	2487	2440;2487		97.741	49.992	1	454520			38309	7911	22388	22389	46271;46272	46272		862			0.03925439800059394
RPAERLDYL	9	Unmodified	_RPAERLDYL_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2853393554688	2	566.809105	1131.60366	0.48767	0.00027642	-0.078177	-4.4312E-05	0.40949	0.0002321	566.8091330022521	35.854	0.57442	35.937	35.71	36.284	0.082355					49	20	3	0	0	0	0.21113	1	7268	7268		29.437	15.531	1	747400			38310	3868	22389	22390	46273	46273					0.043119327375507055
RPAERLDYL	9	Unmodified	_RPAERLDYL_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2854614257812	2	566.809105	1131.60366	0.39314	0.00022284	-0.010099	-5.7241E-06	0.38304	0.00021711	566.8091890996529	35.873	0.62893	35.96	35.671	36.3	0.08625					58	22	4	0	0	0	0.21113	1	7211	7211		29.437	13.288	1	699440			38311	3868	22389	22390	46274	46274					0.043119327375507055
RPAEVGGMQL	10	Oxidation (M)	_RPAEVGGM(Oxidation (M))QL_		RPAEVGGM(1)QL		RPAEVGGM(100)QL	0	0	1		nc|ENSG00000128951|P33316-2|DUT;ENSG00000128951|ENST00000331200|DUT	nc|ENSG00000128951|P33316-2|DUT	nc|ENSG00000128951|P33316-2|DUT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2741088867188	2	537.274041	1072.53353	0.64422	0.00034612	-0.22381	-0.00012025	0.42041	0.00022587	537.2737513803743	29.128	0.5677	29.128	28.845	29.413	0					48	20	4	0	0	0	0.0033041	1	5177	5177		101.54	53.795	1	474600			38312	3403	22390	22391	46275	46275		428			0.00016311077456521161
RPAFFAERL	9	Unmodified	_RPAFFAERL_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8089599609375	2	553.808908	1105.60326	0.47277	0.00026182	0.018427	1.0205E-05	0.49119	0.00027203	553.8087198069192	45.248	1.0891	45.248	44.771	45.86	0					95	39	4	0	0	0	0.011693	2	10125	10125;10174		76.825	38.674	1	2191600			38313	4134	22391	22392	46276;46277	46276					0.054685578083763176
RPAFFAERL	9	Unmodified	_RPAFFAERL_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8089599609375	2	553.808908	1105.60326	0.44303	0.00024535	-0.087466	-4.8439E-05	0.35556	0.00019691	553.808723572894	44.92	0.89074	44.988	44.711	45.602	0.068569					71	31	3	0	0	0	0.0032746	2	9999	9999;10051		100.09	49.236	1	2996300			38314	4134	22391	22392	46278;46279	46278					0.054685578083763176
RPAFFAERL	9	Unmodified	_RPAFFAERL_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8088989257812	2	553.808908	1105.60326	0.45443	0.00025167	-0.056612	-3.1352E-05	0.39782	0.00022032	553.8086801058834	44.917	0.99001	44.992	44.643	45.633	0.075047					80	36	3	0	0	0	0.0091837	2	9992	9992;10044		80.676	32.181	1	2563800			38315	4134	22391	22392	46280;46281	46280					0.054685578083763176
RPAFFSPSL	9	Unmodified	_RPAFFSPSL_					0	0	0		ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.3000793457031	2	511.276909	1020.53927	0.41999	0.00021473	0.73308	0.00037481	1.1531	0.00058954	511.2770395194614	56.703	0.61646	56.703	56.447	57.064	0					46	22	3	0	0	0	0.18936	1	13610	13610		32.786	12.332	1	466620			38316	1581	22392	22393	46282	46282					0.029817776514164507
RPAFFSPSL	9	Unmodified	_RPAFFSPSL_					0	0	0		ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.30029296875	2	511.276909	1020.53927	0.51432	0.00026296	0.88385	0.00045189	1.3982	0.00071485	511.2773430599074	56.511	0.68746	56.589	56.41	57.097	0.078671					41	25	2	0	0	0	0.13643	1	13582	13582		45.7	9.5726	1	419100			38317	1581	22392	22393	46283	46283					0.029817776514164507
RPAFGNRAL	9	Unmodified	_RPAFGNRAL_					0	0	0		nc|ENSG00000180767|Q8NET6-2|CHST13;ENSG00000180767|ENST00000319340|CHST13	nc|ENSG00000180767|Q8NET6-2|CHST13	nc|ENSG00000180767|Q8NET6-2|CHST13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7772521972656	2	501.2856	1000.55665	0.26208	0.00013138	-0.064164	-3.2164E-05	0.19792	9.9214E-05	501.2854823340191	27.104	0.74432	27.104	26.871	27.615	0					47	25	3	0	0	0	0.14076	3	4557	4549;4557;4607		32.305	24.021	1	216000			38318	7199	22393	22394	46284;46285;46286	46285					0.05639117977091246
RPAFGNRAL	9	Unmodified	_RPAFGNRAL_					0	0	0		nc|ENSG00000180767|Q8NET6-2|CHST13;ENSG00000180767|ENST00000319340|CHST13	nc|ENSG00000180767|Q8NET6-2|CHST13	nc|ENSG00000180767|Q8NET6-2|CHST13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2857971191406	2	501.2856	1000.55665	0.20191	0.00010121	0.015544	7.7917E-06	0.21745	0.000109	501.2855745964716	27.149	0.56717	27.127	26.897	27.464	-0.021412					32	19	2	0	0	0	0.15219	1	4594	4594		30.637	15.388	1	227020			38319	7199	22393	22394	46287	46287					0.05639117977091246
RPAFGNRAL	9	Unmodified	_RPAFGNRAL_					0	0	0		nc|ENSG00000180767|Q8NET6-2|CHST13;ENSG00000180767|ENST00000319340|CHST13	nc|ENSG00000180767|Q8NET6-2|CHST13	nc|ENSG00000180767|Q8NET6-2|CHST13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.28558349609375	2	501.2856	1000.55665	0.25646	0.00012856	-0.22776	-0.00011417	0.028701	1.4388E-05	501.28542346070253	27.182	0.62309	27.17	26.904	27.527	-0.01156					42	21	3	0	0	0	0.19747	1	4581	4581		24.021	7.0783	1	195310			38320	7199	22393	22394	46288	46288					0.05639117977091246
RPAFKGLTF	9	Unmodified	_RPAFKGLTF_					0	0	0		nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENSG00000156804|ENST00000517956|FBXO32	nc|ENSG00000156804|Q969P5-2|FBXO32	nc|ENSG00000156804|Q969P5-2|FBXO32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.80078125	2	518.800552	1035.58655	0.52628	0.00027303	-0.44497	-0.00023085	0.081312	4.2185E-05	518.800464965479	45.44	1.3896	45.499	45.195	46.585	0.059834					130	49	5	0	0	0	0.0046246	4	10159	10109;10159;10203;10248		89.401	47.306	1	12561000			38321	5257	22394	22395	46289;46290;46291;46292	46290					0.07018056922402138
RPAFKGLTF	9	Unmodified	_RPAFKGLTF_					0	0	0		nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENSG00000156804|ENST00000517956|FBXO32	nc|ENSG00000156804|Q969P5-2|FBXO32	nc|ENSG00000156804|Q969P5-2|FBXO32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.8006591796875	2	518.800552	1035.58655	0.45628	0.00023672	-0.39007	-0.00020237	0.066214	3.4352E-05	518.800491126675	45.465	1.2742	45.53	45.091	46.366	0.065048					124	42	5	0	0	0	0.0019475	3	10115	10115;10164;10213		110.67	68.58	1	12962000			38322	5257	22394	22395	46293;46294;46295	46293					0.07018056922402138
RPAFKGLTF	9	Unmodified	_RPAFKGLTF_					0	0	0		nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENSG00000156804|ENST00000517956|FBXO32	nc|ENSG00000156804|Q969P5-2|FBXO32	nc|ENSG00000156804|Q969P5-2|FBXO32	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	518.800552	1035.58655	0.70947	0.00036807	-0.64143	-0.00033277	0.068035	3.5297E-05	518.8003428722557	45.81	1.3087	45.81	45.424	46.732	0	0.19732	-0.00013858	NaN	110.67	126	47	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11406000			38323	5257	22394	22395							0.07018056922402138
RPAFPGYGV	9	Unmodified	_RPAFPGYGV_					0	0	0		nc|ENSG00000258436|Q7Z5J4-4|RAI1;nc|ENSG00000258436|Q7Z5J4-3|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;ENSG00000108557|ENST00000353383|RAI1	nc|ENSG00000258436|Q7Z5J4-4|RAI1	nc|ENSG00000258436|Q7Z5J4-4|RAI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7870788574219	2	482.255977	962.497401	0.46911	0.00022623	-0.73593	-0.00035491	-0.26682	-0.00012868	482.2556213852848	45.438	0.65055	45.498	45.142	45.792	0.059834					37	22	2	0	0	0	0.1854	1	10143	10143		19.257	0	1	192500			38324	2193	22395	22396	46296	46296					0.014652219629056162
RPAGARLLL	9	Unmodified	_RPAGARLLL_					0	0	0		ENSG00000178752|ENST00000546354|ERFE	ENSG00000178752|ENST00000546354|ERFE	ENSG00000178752|ENST00000546354|ERFE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.826904296875	2	483.813993	965.613434	-0.039327	-1.9027E-05	2.3287	0.0011267	2.2894	0.0011076	483.8153845801318	39.852	0.2449	39.852	39.723	39.968	0					9	8	2	0	0	0	0.22188	1	8453	8453		20.454	6.5476	1	98798			38325	7075	22396	22397	46297	46297					0.1292516553361338
RPAGARLLL	9	Unmodified	_RPAGARLLL_					0	0	0		ENSG00000178752|ENST00000546354|ERFE	ENSG00000178752|ENST00000546354|ERFE	ENSG00000178752|ENST00000546354|ERFE	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.8269348144531	2	483.813993	965.613434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.652	1	39.745	39.245	40.245	0.09267								0	0	0	0.20639	1	8385	8385		20.454	6.5476	1				38326	7075	22396	22397	46298	46298					0.1292516553361338
RPAGARLLL	9	Unmodified	_RPAGARLLL_					0	0	0		ENSG00000178752|ENST00000546354|ERFE	ENSG00000178752|ENST00000546354|ERFE	ENSG00000178752|ENST00000546354|ERFE	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.8269348144531	2	483.813993	965.613434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.595	1	39.695	39.195	40.195	0.099407								0	0	0	0.20639	1	8360	8360		20.454	6.9457	1				38327	7075	22396	22397	46299	46299					0.1292516553361338
RPAGKGSITI	10	Unmodified	_RPAGKGSITI_					0	0	0		ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.74322509765625	2	500.300916	998.587279	0.18368	9.1895E-05	0.2038	0.00010196	0.38748	0.00019385	500.30101708025035	22.509	0.7687	22.509	22.252	23.021	0					50	26	3	0	0	0	0.31323	1	3157	3157		15.248	7.3383	1	140030			38328	1261	22397	22398	46300	46300					0.08792851571456595
RPAGKGSITI	10	Unmodified	_RPAGKGSITI_					0	0	0		ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.30084228515625	2	500.300916	998.587279	0.16991	8.5009E-05	-0.1996	-9.9862E-05	-0.02969	-1.4854E-05	500.30066031195554	22.65	0.67034	22.562	22.296	22.967	-0.087608					53	23	3	0	0	0	0.31838	1	3217	3217		7.609	0.88579	1	154220			38329	1261	22397	22398	46301	46301					0.08792851571456595
RPAGLSPTL	9	Unmodified	_RPAGLSPTL_					0	0	0		nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4;nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4	nc|ENSG00000144560|Q14135-5|VGLL4	nc|ENSG00000144560|Q14135-5|VGLL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2690124511719	2	456.269084	910.523616	0.42808	0.00019532	-0.50061	-0.00022841	-0.072528	-3.3093E-05	456.26877930111687	37.658	0.66497	37.658	37.342	38.007	0					43	23	2	0	0	0	0.018449	1	7799	7799		66.457	3.884	1	672540			38330	4593	22398	22399	46302	46302					0.06477491134376123
RPAGPALLL	9	Unmodified	_RPAGPALLL_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2906494140625	2	454.28982	906.565087	0.21712	9.8633E-05	1.1364	0.00051626	1.3535	0.0006149	454.2902624322834	51.598	0.85342	51.598	51.327	52.18	0					59	31	3	0	0	0	0.055495	1	12025	12025		50.855	6.448	1	1021100			38331	7108	22399	22400	46303	46303					0.10806671893703879
RPAGPALLL	9	Unmodified	_RPAGPALLL_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.28973388671875	2	454.28982	906.565087	0.17048	7.7446E-05	0.26833	0.0001219	0.4388	0.00019934	454.28973875178275	51.472	0.52055	51.519	51.375	51.896	0.046574					43	18	3	0	0	0	0.079066	1	12039	12039		42.095	3.9434	1	1128300			38332	7108	22399	22400	46304	46304					0.10806671893703879
RPAGPALLL	9	Unmodified	_RPAGPALLL_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.28948974609375	2	454.28982	906.565087	0.14711	6.6833E-05	0.66295	0.00030117	0.81007	0.00036801	454.28991033258353	51.612	0.64469	51.621	51.347	51.992	0.0095634					53	23	3	0	0	0	0.037693	1	12029	12029		57.471	6.6163	1	897530			38333	7108	22399	22400	46305	46305					0.10806671893703879
RPAGPALLLL	10	Unmodified	_RPAGPALLLL_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8319091796875	2	510.831852	1019.64915	0.56747	0.00028988	-1.4772	-0.00075458	-0.90969	-0.0004647	510.83179465696224	65.943	1.1124	65.943	65.518	66.63	0					107	37	5	0	0	0	0.22916	2	16475	16475;16528		29.082	3.6823	1	1281700			38334	7108	22400	22401	46306;46307	46306					0.14011202990604943
RPAGPALLLL	10	Unmodified	_RPAGPALLLL_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.83209228515625	2	510.831852	1019.64915	0.53219	0.00027186	-0.1657	-8.4646E-05	0.36649	0.00018721	510.8317007014639	65.855	1.1186	65.944	65.38	66.499	0.088882					63	30	3	0	0	0	0.12843	1	16436	16436		41.84	3.8656	1	1253100			38335	7108	22400	22401	46308	46308					0.14011202990604943
RPAGPALLLL	10	Unmodified	_RPAGPALLLL_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.8319396972656	2	510.831852	1019.64915	0.35052	0.00017906	-1.3815	-0.00070569	-1.0309	-0.00052664	510.8318597890905	65.97	1.0521	65.956	65.61	66.662	-0.013588					115	36	6	0	0	0	0.11922	1	16465	16465		43.858	9.7559	1	1314600			38336	7108	22400	22401	46309	46309					0.14011202990604943
RPAGWSVQAK	10	Unmodified	_RPAGWSVQAK_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.7838745117188	2	550.30399	1098.59343	0.43171	0.00023757	1.3547	0.00074552	1.7865	0.0009831	550.3037256762793	19.565	0.92285	19.449	19.145	20.068	-0.11592					69	31	3	0	0	0	0.3258	1	2411	2411		17.113	3.2068	1	132230			38337	8391	22401	22402	46310	46310					0.04807369802983885
RPAIKTTIK	9	Unmodified	_RPAIKTTIK_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L;ASH1L|p.P1413Sfs*29|1|0.04|ENSG00000116539|chr1:155478634-155478635|-/T|frameshift_variant	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7869262695312	2	514.334759	1026.65496	0.03361	1.7287E-05	-0.5227	-0.00026884	-0.48909	-0.00025156	514.3342260165821	15.303	0.25391	15.193	15.093	15.347	-0.10981					12	8	2	0	0	0	0.26168	1	1012	1012		1.8442	0.19162	1	18099			38338	2730	22402	22403	46311	46311					0.14270301502256189
RPAIKTTIK	9	Unmodified	_RPAIKTTIK_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L;ASH1L|p.P1413Sfs*29|1|0.04|ENSG00000116539|chr1:155478634-155478635|-/T|frameshift_variant	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	514.334759	1026.65496	-0.082943	-4.2661E-05	-1.0716	-0.00055118	-1.1546	-0.00059384	514.3341395443952	15.369	0.20521	15.305	15.128	15.333	-0.064414	0.056085	-0.00019506	NaN	1.8442	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31184			38339	2730	22402	22403							0.14270301502256189
RPAIPGGGRQA	11	Unmodified	_RPAIPGGGRQA_					0	0	0		ENST00000374910.3_1_X:57146877-57147708:-|nuORF	ENST00000374910.3_1_X:57146877-57147708:-|nuORF	ENST00000374910.3_1_X:57146877-57147708:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3068237304688	2	540.307064	1078.59957	0.44375	0.00023976	-0.035385	-1.9119E-05	0.40836	0.00022064	540.3066561896046	17.004	0.46186	17.004	16.81	17.272	0					35	15	4	0	0	0	0.33037	1	1482	1482		7.609	2.3121	1	115290			38340	9904	22403	22404	46312	46312					0.06341888034535259
RPAIVQNITF	10	Unmodified	_RPAIVQNITF_					0	0	0		ENSG00000128585|ENST00000352689|MKLN1;MKLN1|p.I366Lfs*9|1|0.26|ENSG00000128585|chr7:131437920-131437920|A/-|frameshift_variant;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENSG00000128585|ENST00000352689|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.83544921875	2	579.835123	1157.65569	0.18262	0.00010589	0.31727	0.00018396	0.49989	0.00028985	579.8351904179747	55.469	0.62231	55.469	55.198	55.82	0					52	22	3	0	0	0	0.030754	2	13238	13238;13287		63.227	39.438	1	1061900			38341	3375	22404	22405	46313;46314	46313					0.08317096151313308
RPAIVQNITF	10	Unmodified	_RPAIVQNITF_					0	0	0		ENSG00000128585|ENST00000352689|MKLN1;MKLN1|p.I366Lfs*9|1|0.26|ENSG00000128585|chr7:131437920-131437920|A/-|frameshift_variant;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENSG00000128585|ENST00000352689|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.8353881835938	2	579.835123	1157.65569	0.50761	0.00029433	0.079115	4.5873E-05	0.58673	0.00034021	579.8350309886468	55.399	0.56119	55.469	55.216	55.777	0.070885					50	20	3	0	0	0	0.067258	1	13207	13207		55.235	26.74	1	1076800			38342	3375	22404	22405	46315	46315					0.08317096151313308
RPAIVQNITF	10	Unmodified	_RPAIVQNITF_					0	0	0		ENSG00000128585|ENST00000352689|MKLN1;MKLN1|p.I366Lfs*9|1|0.26|ENSG00000128585|chr7:131437920-131437920|A/-|frameshift_variant;ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENSG00000128585|ENST00000352689|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8355712890625	2	579.835123	1157.65569	0.28864	0.00016736	0.37394	0.00021682	0.66258	0.00038419	579.8352213216033	55.571	0.50859	55.552	55.29	55.798	-0.019077					46	18	3	0	0	0	0.12628	2	13253	13253;13329		42.312	21.898	1	1085000			38343	3375	22404	22405	46316;46317	46316					0.08317096151313308
RPAKGEAIL	9	Unmodified	_RPAKGEAIL_					0	0	0			REV__ENST00000476245.5_1_3:125869637-125874346:-|nuORF	REV__ENST00000476245.5_1_3:125869637-125874346:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7774658203125	2	477.790184	953.565815	0.47733	0.00022806	-0.89113	-0.00042577	-0.41381	-0.00019771	477.78975898096917	20.777	0.39239	20.724	20.525	20.917	-0.05291					23	13	2	0	0	0	0.31038	1	2632	2632		7.2892	1.0834	1	50210	+		38344	16270	22405	22406	46318	46318					0.08717466542748298
RPALARPGLR	10	Unmodified	_RPALARPGLR_					0	0	0		ENSG00000228594|ENST00000422725|FNDC10	ENSG00000228594|ENST00000422725|FNDC10	ENSG00000228594|ENST00000422725|FNDC10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8490600585938	2	553.848899	1105.68324	0.34007	0.00018835	-0.24634	-0.00013643	0.093731	5.1913E-05	553.8487746425644	19.735	0.41045	19.619	19.375	19.786	-0.11592					26	13	3	0	0	0	0.41085	1	2315	2315		1.4819	0	1	54160			38345	8460	22406	22407	46319	46319					0.13463044202217134
RPALARPGLR	10	Unmodified	_RPALARPGLR_					0	0	0		ENSG00000228594|ENST00000422725|FNDC10	ENSG00000228594|ENST00000422725|FNDC10	ENSG00000228594|ENST00000422725|FNDC10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.848899	1105.68324	0.1771	9.8085E-05	-0.33707	-0.00018669	-0.15997	-8.8602E-05	553.8486812509817	19.518	0.47374	19.518	19.294	19.768	0	-0.061302	-9.0858E-06	NaN	1.4819	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43676			38346	8460	22406	22407							0.13463044202217134
RPALARPGLR	10	Unmodified	_RPALARPGLR_					0	0	0		ENSG00000228594|ENST00000422725|FNDC10	ENSG00000228594|ENST00000422725|FNDC10	ENSG00000228594|ENST00000422725|FNDC10	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.848899	1105.68324	0.34007	0.00018835	-0.24634	-0.00013643	0.093731	5.1913E-05	553.8487746425644	19.735	0.41045	19.619	19.375	19.786	-0.11592	0.039931	9.1419E-05	NaN	1.4819	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54160			38347	8460	22406	22407							0.13463044202217134
RPALARPGLR	10	Unmodified	_RPALARPGLR_					0	0	0		ENSG00000228594|ENST00000422725|FNDC10	ENSG00000228594|ENST00000422725|FNDC10	ENSG00000228594|ENST00000422725|FNDC10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	553.848899	1105.68324	0.34582	0.00019153	-0.39122	-0.00021668	-0.045399	-2.5144E-05	553.848689376627	19.656	0.50837	19.601	19.369	19.877	-0.055691	0.021371	-6.9068E-05	NaN	1.4819	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49678			38348	8460	22406	22407							0.13463044202217134
RPALERSLKNL	11	Unmodified	_RPALERSLKNL_					0	0	0		ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF	ENSG00000187134|ENST00000380872|AKR1C1	ENSG00000187134|ENST00000380872|AKR1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.9297180175781	3	432.929733	1295.76737	0.12635	5.4699E-05	-0.6067	-0.00026266	-0.48035	-0.00020796	432.9296407708536	32.565	1.4978	32.565	32.119	33.617	0					169	53	5	0	0	0	0.0061529	5	6205	6159;6205;6254;6301;6367		77.813	40.562	1	6822900			38349	7666	22407	22408	46320;46321;46322;46323;46324	46321					0.13131530508462674
RPALERSLKNL	11	Unmodified	_RPALERSLKNL_					0	0	0		ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF	ENSG00000187134|ENST00000380872|AKR1C1	ENSG00000187134|ENST00000380872|AKR1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	648.8912963867188	2	648.890961	1295.76737	0.7011	0.00045494	-0.13521	-8.7733E-05	0.5659	0.0003672	648.8908035423154	32.544	0.64348	32.544	32.251	32.895	0					51	22	3	0	0	0	0.090382	2	6241	6194;6241		42.835	28.43	1	418420			38350	7666	22407	22408	46325;46326	46326					0.13131530508462674
RPALERSLKNL	11	Unmodified	_RPALERSLKNL_					0	0	0		ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF	ENSG00000187134|ENST00000380872|AKR1C1	ENSG00000187134|ENST00000380872|AKR1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.92974853515625	3	432.929733	1295.76737	0.2322	0.00010053	-0.73563	-0.00031848	-0.50342	-0.00021795	432.9295802564926	32.434	1.7089	32.489	32.066	33.775	0.055309					164	61	5	0	0	0	0.0070159	4	6173	6128;6173;6224;6280		75.986	37.428	1	7572200			38351	7666	22407	22408	46327;46328;46329;46330	46328					0.13131530508462674
RPALERSLKNL	11	Unmodified	_RPALERSLKNL_					0	0	0		ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF	ENSG00000187134|ENST00000380872|AKR1C1	ENSG00000187134|ENST00000380872|AKR1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	648.89111328125	2	648.890961	1295.76737	0.63866	0.00041442	0.036898	2.3943E-05	0.67556	0.00043837	648.8908995048721	32.431	0.49819	32.487	32.206	32.704	0.055313					45	17	3	0	0	0	0.081251	2	6213	6162;6213		53.317	33.955	1	452420			38352	7666	22407	22408	46331;46332	46332					0.13131530508462674
RPALERSLKNL	11	Unmodified	_RPALERSLKNL_					0	0	0		ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF	ENSG00000187134|ENST00000380872|AKR1C1	ENSG00000187134|ENST00000380872|AKR1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.92974853515625	3	432.929733	1295.76737	-0.046064	-1.9942E-05	-0.45004	-0.00019483	-0.4961	-0.00021478	432.92969344979633	32.464	1.6002	32.518	32.02	33.621	0.054375					180	57	5	0	0	0	0.0015507	5	6174	6129;6174;6214;6256;6302		89.193	50.634	1	7235400			38353	7666	22407	22408	46333;46334;46335;46336;46337	46334					0.13131530508462674
RPALERSLKNL	11	Unmodified	_RPALERSLKNL_					0	0	0		ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF	ENSG00000187134|ENST00000380872|AKR1C1	ENSG00000187134|ENST00000380872|AKR1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	648.8912353515625	2	648.890961	1295.76737	0.3376	0.00021906	0.31698	0.00020569	0.65458	0.00042475	648.8911222745885	32.478	0.56854	32.533	32.223	32.791	0.054371					50	20	3	0	0	0	0.16009	2	6162	6162;6243		35.612	24.813	1	389780			38354	7666	22407	22408	46338;46339	46338					0.13131530508462674
RPALFANLF	9	Unmodified	_RPALFANLF_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000570986.1_1_17:4457199-4458649:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.8003540039062	2	524.800552	1047.58655	0.5715	0.00029992	-0.79889	-0.00041926	-0.2274	-0.00011934	524.7999818582645	71.824	0.71758	71.824	71.55	72.267	0					73	25	4	0	0	0	0.0063774	1	18258	18258		96.285	47.939	1	1059000			38355	3627	22408	22409	46340	46340					0.06466056922386088
RPALFANLF	9	Unmodified	_RPALFANLF_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000570986.1_1_17:4457199-4458649:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8001708984375	2	524.800552	1047.58655	0.59185	0.0003106	-0.60123	-0.00031553	-0.0093836	-4.9245E-06	524.8001483447375	71.926	0.62582	71.899	71.63	72.256	-0.027275					64	22	4	0	0	0	0.00067763	1	18309	18309		111.29	56.513	1	1121200			38356	3627	22408	22409	46341	46341					0.06466056922386088
RPALLRSSF	9	Unmodified	_RPALLRSSF_					0	0	0			REV__ENST00000257527.8_2_5:156907649-156907700:-|nuORF	REV__ENST00000257527.8_2_5:156907649-156907700:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.7921142578125	2	523.808908	1045.60326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.999	1	41.089	40.589	41.589	0.090252								0	0	0	0.23367	1	8796	8796		11.64	0	1		+		38357	19557	22409	22410	46342	46342					0.08228557808365622
RPALPLIL	8	Unmodified	_RPALPLIL_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	446.8024597167969	2	446.802563	891.590573	0.34286	0.00015319	-0.27426	-0.00012254	0.068601	3.0651E-05	446.80234502761726	64.755	0.92246	64.755	64.37	65.293	0					85	33	4	0	0	0	0.23581	1	16104	16104		38.151	3.9638	1	1467400			38358	558	22410	22411	46343	46343					0.14044146416131298
RPALPLIL	8	Unmodified	_RPALPLIL_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	446.80267333984375	2	446.802563	891.590573	0.3099	0.00013846	-0.2119	-9.4676E-05	0.098003	4.3788E-05	446.8023658799194	64.615	0.85436	64.707	64.445	65.299	0.09288					82	31	4	0	0	0	0.12267	1	16064	16064		56.541	6.8724	1	1450800			38359	558	22410	22411	46344	46344					0.14044146416131298
RPALPLIL	8	Unmodified	_RPALPLIL_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	446.802563	891.590573	0.30219	0.00013502	-0.2095	-9.3607E-05	0.092685	4.1412E-05	446.8023423135507	64.764	0.9569	64.755	64.443	65.4	-0.0095291	0.015666	1.8232E-05	NaN	56.541	76	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1384500			38360	558	22410	22411							0.14044146416131298
RPALPLILGL	10	Unmodified	_RPALPLILGL_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8172607421875	2	531.855327	1061.6961	0.99884	0.00053124	-2.623	-0.001395	-1.6241	-0.0008638	531.8534503449928	78.292	0.31403	78.262	78.034	78.348	-0.030434					23	11	3	0	0	0	0.31358	1	20211	20211		13.906	3.8321	1	225100			38361	558	22411	22412	46345	46345					0.16772062541758714
RPALPLILGL	10	Unmodified	_RPALPLILGL_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.855327	1061.6961	0.93497	0.00049727	-2.4867	-0.0013226	-1.5517	-0.00082531	531.8538534327959	78.225	0.45596	78.225	77.902	78.358	0	-0.025329	-0.00012981	NaN	13.906	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351470			38362	558	22411	22412							0.16772062541758714
RPALPLILGL	10	Unmodified	_RPALPLILGL_					0	0	0		nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	531.855327	1061.6961	0.6819	0.00036267	-2.1311	-0.0011334	-1.4492	-0.00077074	531.8539234076992	78.207	0.41044	78.265	77.979	78.39	0.058151	0.014394	0.00024851	NaN	13.906	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368200			38363	558	22411	22412							0.16772062541758714
RPALPRSEL	9	Unmodified	_RPALPRSEL_					0	0	0		ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7921142578125	2	519.806365	1037.59818	0.27146	0.00014111	-0.19251	-0.00010007	0.078949	4.1038E-05	519.8060916249631	31.136	0.66571	31.136	30.81	31.476	0					64	23	3	0	0	0	0.25112	1	5742	5742		16.149	0.30192	1	675430			38364	352	22412	22413	46346	46346					0.08088253945743418
RPALPRSEL	9	Unmodified	_RPALPRSEL_					0	0	0		ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7919311523438	2	519.806365	1037.59818	0.25598	0.00013306	-0.36801	-0.0001913	-0.11203	-5.8234E-05	519.8060550245725	31.051	0.65532	31.078	30.81	31.466	0.027157					63	23	3	0	0	0	0.19083	1	5736	5736		24.991	7.8781	1	882870			38365	352	22412	22413	46347	46347					0.08088253945743418
RPALPRSEL	9	Unmodified	_RPALPRSEL_					0	0	0		ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	519.806365	1037.59818	0.27146	0.00014111	-0.19251	-0.00010007	0.078949	4.1038E-05	519.8060916249631	31.136	0.66571	31.136	30.81	31.476	0	0.024598	8.0129E-05	NaN	24.991	64	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	675430			38366	352	22412	22413							0.08088253945743418
RPALPRSEL	9	Unmodified	_RPALPRSEL_					0	0	0		ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	519.806365	1037.59818	0.12232	6.3581E-05	-0.2537	-0.00013187	-0.13138	-6.8293E-05	519.8061798523786	31.093	0.74992	31.121	30.81	31.559	0.027946	0.009096	1.6518E-05	NaN	24.991	60	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	938530			38367	352	22412	22413							0.08088253945743418
RPALPVSYL	9	Unmodified	_RPALPVSYL_					0	0	0		ENSG00000167615|ENST00000326764|LENG8	ENSG00000167615|ENST00000326764|LENG8	ENSG00000167615|ENST00000326764|LENG8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3006286621094	2	508.300384	1014.58622	0.67263	0.0003419	-0.28761	-0.00014619	0.38503	0.00019571	508.3002508248861	56.384	0.80748	56.384	56.13	56.937	0					71	29	4	0	0	0	0.05341	2	13567	13567;13640		51.63	28.481	1	2302100			38368	6190	22413	22414	46348;46349	46348					0.07950637202554844
RPALPVSYL	9	Unmodified	_RPALPVSYL_					0	0	0		ENSG00000167615|ENST00000326764|LENG8	ENSG00000167615|ENST00000326764|LENG8	ENSG00000167615|ENST00000326764|LENG8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.3004455566406	2	508.300384	1014.58622	0.74997	0.00038121	-0.59017	-0.00029998	0.1598	8.1228E-05	508.30029031595046	56.296	1.0124	56.375	56.085	57.097	0.078674					89	37	4	0	0	0	0.03069	1	13531	13531		60.074	36.053	1	2100200			38369	6190	22413	22414	46350	46350					0.07950637202554844
RPALPVSYL	9	Unmodified	_RPALPVSYL_					0	0	0		ENSG00000167615|ENST00000326764|LENG8	ENSG00000167615|ENST00000326764|LENG8	ENSG00000167615|ENST00000326764|LENG8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.300384	1014.58622	0.93884	0.00047722	-0.13439	-6.831E-05	0.80446	0.00040891	508.3002757728679	56.39	0.98335	56.371	56.159	57.142	-0.019081	-0.0054445	0.00014974	NaN	60.074	74	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2083000			38370	6190	22413	22414							0.07950637202554844
RPALQHVVKVL	11	Unmodified	_RPALQHVVKVL_					0	0	0		ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.9273986816406	3	420.603068	1258.78738	0.070168	2.9513E-05	-0.44448	-0.00018695	-0.37432	-0.00015744	420.6031451288794	36.586	0.56881	36.586	36.416	36.985	0					35	19	3	0	0	0	0.32493	1	7440	7440		19.987	9.6717	1	278970			38371	2209	22414	22415	46351	46351					0.16833326239066082
RPALQHVVKVL	11	Unmodified	_RPALQHVVKVL_					0	0	0		ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.9273681640625	3	420.603068	1258.78738	0.1933	8.1305E-05	-0.88826	-0.00037361	-0.69496	-0.0002923	420.6031377609952	36.45	0.39542	36.532	36.362	36.757	0.082355					30	13	3	0	0	0	0.32493	1	7405	7405		19.987	9.0879	1	234530			38372	2209	22414	22415	46352	46352					0.16833326239066082
RPALQHVVKVL	11	Unmodified	_RPALQHVVKVL_					0	0	0		ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.92724609375	3	420.603068	1258.78738	0.5175	0.00021766	-1.0866	-0.00045702	-0.56909	-0.00023936	420.60287239703194	36.486	0.48379	36.572	36.3	36.783	0.086246					35	16	3	0	0	0	0.32493	2	7418	7367;7418		19.987	9.2375	1	252810			38373	2209	22414	22415	46353;46354	46354					0.16833326239066082
RPALRLPSL	9	Unmodified	_RPALRLPSL_					0	0	0		ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000514698.5_1_4:980866-997838:+|nuORF	ENST00000514698.5_1_4:980866-997838:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.8272705078125	2	511.827101	1021.63965	0.45005	0.00023035	0.072561	3.7139E-05	0.52261	0.00026749	511.827027898922	49.291	1.2611	49.291	48.582	49.843	0					107	45	3	0	0	0	0.011693	3	11331	11283;11331;11380		76.825	10.368	1	1254600			38374	3318	22415	22416	46355;46356;46357	46356					0.12969434705075855
RPALRLPSL	9	Unmodified	_RPALRLPSL_					0	0	0		ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000514698.5_1_4:980866-997838:+|nuORF	ENST00000514698.5_1_4:980866-997838:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.8273010253906	2	511.827101	1021.63965	0.2451	0.00012545	0.21737	0.00011126	0.46247	0.00023671	511.8271164219995	49.333	1.2473	49.378	48.629	49.877	0.044891					108	45	4	0	0	0	0.015924	3	11401	11298;11347;11401		70.332	10.258	1	1550400			38375	3318	22415	22416	46358;46359;46360	46360					0.12969434705075855
RPALRLPSL	9	Unmodified	_RPALRLPSL_					0	0	0		ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000514698.5_1_4:980866-997838:+|nuORF	ENST00000514698.5_1_4:980866-997838:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.8273010253906	2	511.827101	1021.63965	0.10909	5.5837E-05	0.38431	0.0001967	0.49341	0.00025254	511.82718845075556	49.346	1.3483	49.378	48.602	49.951	0.032043					109	48	3	0	0	0	0.020233	3	11274	11274;11326;11380		63.961	9.8031	1	1388300			38376	3318	22415	22416	46361;46362;46363	46361					0.12969434705075855
RPALRSPPP	9	Unmodified	_RPALRSPPP_					0	0	0		ENSG00000099999|ENST00000382363|RNF215	ENSG00000099999|ENST00000382363|RNF215	ENSG00000099999|ENST00000382363|RNF215	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7495422363281	2	495.795801	989.577048	0.42845	0.00021242	-3.7277	-0.0018482	-3.2993	-0.0016358	495.79529095990915	21.618	0.39541	21.618	21.368	21.763	0					17	13	2	0	0	0	0.25988	1	2876	2876		3.9444	1.3669	1	35077			38377	1514	22416	22417	46364	46364					0.0818428863688041
RPALRSPPP	9	Unmodified	_RPALRSPPP_					0	0	0		ENSG00000099999|ENST00000382363|RNF215	ENSG00000099999|ENST00000382363|RNF215	ENSG00000099999|ENST00000382363|RNF215	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7494201660156	2	495.795801	989.577048	0.43022	0.0002133	-2.0714	-0.001027	-1.6411	-0.00081367	495.79531059919805	21.31	0.76822	21.26	20.921	21.689	-0.049377					37	26	2	0	0	0	0.25988	1	2881	2881		3.9444	1.3669	1	42992			38378	1514	22416	22417	46365	46365					0.0818428863688041
RPALTLLL	8	Unmodified	_RPALTLLL_					0	0	0		ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.800048828125	2	448.80002	895.585488	0.47064	0.00021122	-0.2703	-0.00012131	0.20034	8.9913E-05	448.799776747579	64.213	0.78568	64.213	63.941	64.727	0					71	28	3	0	0	0	0.11736	2	15924	15924;16023		57.471	6.6163	1	1814900			38379	3122	22417	22418	46366;46367	46366					0.1335184255351578
RPALTLLL	8	Unmodified	_RPALTLLL_					0	0	0		ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7999572753906	2	448.80002	895.585488	0.32654	0.00014655	-0.18646	-8.3684E-05	0.14008	6.2868E-05	448.79981985283166	64.138	0.81823	64.231	63.927	64.746	0.092888					80	29	4	0	0	0	0.095164	1	15885	15885		61.357	13.012	1	1898400			38380	3122	22417	22418	46368	46368					0.1335184255351578
RPALTLLL	8	Unmodified	_RPALTLLL_					0	0	0		ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	ENSG00000123739|ENST00000243501|PLA2G12A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.8000183105469	2	448.80002	895.585488	0.45216	0.00020293	-0.29589	-0.00013279	0.15628	7.0137E-05	448.7997554145922	64.284	0.8485	64.274	63.962	64.811	-0.0095291					85	30	4	0	0	0	0.18275	1	15917	15917		46.021	1.6139	1	1798100			38381	3122	22417	22418	46369	46369					0.1335184255351578
RPALVVGAH	9	Unmodified	_RPALVVGAH_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.2537536621094	2	460.277244	918.539935	0.45043	0.00020732	-0.36816	-0.00016945	0.082274	3.7869E-05	460.2770143810402	37.411	0.86304	37.411	37.093	37.956	0					71	30	3	0	0	0	0.21137	1	7652	7652		24.674	6.5389	1	1221100			38382	12813	22418	22419	46370	46370					0.07740617091121749
RPALVVGAH	9	Unmodified	_RPALVVGAH_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.3112487792969	2	460.277244	918.539935	0.14535	6.6901E-05	-0.1865	-8.5844E-05	-0.041154	-1.8942E-05	460.2771349473895	37.34	0.78516	37.427	37.117	37.903	0.087406					78	28	4	0	0	0	0.21137	1	7734	7734		24.674	6.5389	1	1153900			38383	12813	22418	22419	46371	46371					0.07740617091121749
RPALVVGAH	9	Unmodified	_RPALVVGAH_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.3113098144531	2	460.277244	918.539935	0.26214	0.00012066	-0.1815	-8.3538E-05	0.080647	3.712E-05	460.2771298740102	37.317	0.77993	37.41	37.06	37.84	0.093018					75	28	3	0	0	0	0.23783	1	7716	7716		18.135	0	1	1297600			38384	12813	22418	22419	46372	46372					0.07740617091121749
RPANHRQLTF	10	Unmodified	_RPANHRQLTF_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.8959045410156	3	413.895022	1238.66324	0.065742	2.721E-05	-0.035591	-1.4731E-05	0.030151	1.2479E-05	413.8954271878226	20.68	2.3597	20.68	20.263	22.622	0					232	83	4	0	0	0	0.0035922	6	2582	2582;2627;2669;2714;2766;2819		99.864	84.126	1	8955600			38385	7544	22419	22420	46373;46374;46375;46376;46377;46378	46373					0.053452484715762694
RPANHRQLTF	10	Unmodified	_RPANHRQLTF_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3391723632812	2	620.338895	1238.66324	0.37035	0.00022974	-0.27403	-0.00016999	0.096318	5.975E-05	620.3387032185993	20.665	1.0269	20.665	20.341	21.368	0					94	35	4	0	0	0	0.12096	3	2609	2609;2655;2720		42.312	30.072	1	520290			38386	7544	22419	22420	46379;46380;46381	46379					0.053452484715762694
RPANHRQLTF	10	Unmodified	_RPANHRQLTF_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.8958740234375	3	413.895022	1238.66324	0.57093	0.0002363	-0.47587	-0.00019696	0.095059	3.9344E-05	413.8952307060589	20.873	2.0586	20.763	20.322	22.381	-0.11003					240	73	5	0	0	0	0.0058776	6	2659	2659;2708;2750;2795;2843;2892		87.123	60.677	1	10244000			38387	7544	22419	22420	46382;46383;46384;46385;46386;46387	46382					0.053452484715762694
RPANHRQLTF	10	Unmodified	_RPANHRQLTF_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3388061523438	2	620.338895	1238.66324	0.39611	0.00024572	-0.42306	-0.00026244	-0.026954	-1.6721E-05	620.3386194120214	20.884	0.91212	20.774	20.495	21.407	-0.11003					89	31	4	0	0	0	0.01159	3	2675	2675;2721;2773		65.474	45.059	1	502880			38388	7544	22419	22420	46388;46389;46390	46388					0.053452484715762694
RPANHRQLTF	10	Unmodified	_RPANHRQLTF_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.8956604003906	3	413.895022	1238.66324	0.43625	0.00018056	-0.46455	-0.00019228	-0.028297	-1.1712E-05	413.895288700481	20.767	2.3388	20.714	20.302	22.641	-0.052912					243	82	5	0	0	0	0.0031317	7	2651	2610;2651;2694;2739;2783;2825;2879		102.55	82.923	1	10358000			38389	7544	22419	22420	46391;46392;46393;46394;46395;46396;46397	46392					0.053452484715762694
RPANHRQLTF	10	Unmodified	_RPANHRQLTF_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3389282226562	2	620.338895	1238.66324	0.41612	0.00025814	-0.3253	-0.0002018	0.090819	5.6339E-05	620.3386689173901	20.782	1.1013	20.729	20.387	21.488	-0.052912					88	38	3	0	0	0	0.010169	2	2635	2635;2680		67.081	60.45	1	556220			38390	7544	22419	22420	46398;46399	46398					0.053452484715762694
RPAPAAPLL	9	Unmodified	_RPAPAAPLL_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7843933105469	2	453.281995	904.549437	0.10072	4.5655E-05	0.22534	0.00010214	0.32606	0.0001478	453.28196787694395	41.608	0.63307	41.608	41.175	41.809	0					40	27	2	0	0	0	0.037693	1	8989	8989		57.471	15.377	1	2395000			38391	5523	22420	22421	46400	46400					0.0933438537664415
RPAPAAPLL	9	Unmodified	_RPAPAAPLL_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.28192138671875	2	453.281995	904.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.832	1	41.832	41.332	42.332	0								0	0	0	0.061409	1	9052	9052		57.471	15.377	1				38392	5523	22420	22421	46401	46401					0.0933438537664415
RPAPAAPLL	9	Unmodified	_RPAPAAPLL_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2821350097656	2	453.281995	904.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.404	1	41.495	40.995	41.995	0.090252								0	0	0	0.061409	1	8922	8922		57.471	13.064	1				38393	5523	22420	22421	46402	46402					0.0933438537664415
RPAPAAPLL	9	Unmodified	_RPAPAAPLL_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.28192138671875	2	453.281995	904.549437	0.34019	0.0001542	-0.048076	-2.1792E-05	0.29212	0.00013241	453.2818299085725	41.456	0.59967	41.553	41.148	41.748	0.096622					37	24	2	0	0	0	0.037693	2	8906	8906;8947		57.471	15.377	1	2934100			38394	5523	22420	22421	46403;46404	46403					0.0933438537664415
RPAPAAPLL	9	Unmodified	_RPAPAAPLL_					0	0	0		nc|ENSG00000161642|Q96PM9-2|ZNF385A;nc|ENSG00000161642|Q96PM9-3|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF;ENSG00000161642|ENST00000394313|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	nc|ENSG00000161642|Q96PM9-2|ZNF385A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.2818603515625	2	453.281995	904.549437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.662	1	41.759	41.259	42.259	0.096626								0	0	0	0.15265	1	8993	8993		34.102	5.6156	1				38395	5523	22420	22421	46405	46405					0.0933438537664415
RPAPHPLFL	9	Unmodified	_RPAPHPLFL_					0	0	0		nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5;ENST00000457010.6_2_16:31477307-31478207:+|nuORF	nc|ENSG00000140691|Q96C12-2|ARMC5	nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2847290039062	2	524.308544	1046.60253	0.18354	9.6229E-05	-0.4744	-0.00024873	-0.29086	-0.0001525	524.308072525044	42.422	0.34722	42.422	42.277	42.624	0					13	12	2	0	0	0	0.24688	1	9246	9246		14.838	7.549	1	196350			38396	4329	22421	22422	46406	46406					0.08109763159313843
RPAPHPLFL	9	Unmodified	_RPAPHPLFL_					0	0	0		nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5;ENST00000457010.6_2_16:31477307-31478207:+|nuORF	nc|ENSG00000140691|Q96C12-2|ARMC5	nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2847900390625	2	524.308544	1046.60253	0.53024	0.00027801	-1.136	-0.00059561	-0.60575	-0.0003176	524.3079181120181	42.231	0.42105	42.316	42.093	42.514	0.085197					20	14	2	0	0	0	0.2451	1	9157	9157		15.847	4.2069	1	238660			38397	4329	22421	22422	46407	46407					0.08109763159313843
RPAPLSAEL	9	Unmodified	_RPAPLSAEL_					0	0	0		ENST00000562981.1_1_16:88718935-88719839:-|nuORF;ENST00000561895.1_1_16:88718935-88721317:-|nuORF;ENST00000565149.5_1_16:88718935-88722722:-|nuORF;ENSG00000167508|ENST00000301012|MVD	ENST00000562981.1_1_16:88718935-88719839:-|nuORF	ENST00000562981.1_1_16:88718935-88719839:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.2745361328125	2	477.274367	952.53418	0.16205	7.7344E-05	0.17012	8.1195E-05	0.33218	0.00015854	477.27437378233753	40.774	0.80656	40.774	40.445	41.252	0					51	29	2	0	0	0	0.0042138	1	8723	8723		92.653	0	1	707930			38398	6181	22422	22423	46408	46408					0.056014737887949195
RPAPLSAEL	9	Unmodified	_RPAPLSAEL_					0	0	0		ENST00000562981.1_1_16:88718935-88719839:-|nuORF;ENST00000561895.1_1_16:88718935-88721317:-|nuORF;ENST00000565149.5_1_16:88718935-88722722:-|nuORF;ENSG00000167508|ENST00000301012|MVD	ENST00000562981.1_1_16:88718935-88719839:-|nuORF	ENST00000562981.1_1_16:88718935-88719839:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.2745056152344	2	477.274367	952.53418	0.39067	0.00018646	3.761	0.001795	4.1517	0.0019815	477.27421215281424	40.67	0.68797	40.763	40.394	41.082	0.092674					75	25	5	0	0	0	0.012386	1	8668	8668		75.761	0	1	790250			38399	6181	22422	22423	46409	46409					0.056014737887949195
RPAPPAQSL	9	Unmodified	_RPAPPAQSL_					0	0	0		nc|ENSG00000072134|O95208-5|EPN2;nc|ENSG00000072134|O95208-3|EPN2;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000072134|ENST00000314728|EPN2	nc|ENSG00000072134|O95208-5|EPN2	nc|ENSG00000072134|O95208-5|EPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.7665710449219	2	468.766709	935.518865	-0.23101	-0.00010829	-0.012895	-6.0446E-06	-0.2439	-0.00011433	468.76666757992336	27.67	0.83348	27.67	27.408	28.241	0					75	28	3	0	0	0	0.014206	1	4696	4696		72.968	38.866	1	626150			38400	972	22423	22424	46410	46410					0.048526069916078995
RPAPPAQSL	9	Unmodified	_RPAPPAQSL_					0	0	0		nc|ENSG00000072134|O95208-5|EPN2;nc|ENSG00000072134|O95208-3|EPN2;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000072134|ENST00000314728|EPN2	nc|ENSG00000072134|O95208-5|EPN2	nc|ENSG00000072134|O95208-5|EPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7666015625	2	468.766709	935.518865	-0.21481	-0.0001007	-0.13907	-6.5193E-05	-0.35388	-0.00016589	468.76661651044043	27.656	0.88299	27.635	27.321	28.204	-0.021412					73	30	3	0	0	0	0.0024096	1	4693	4693		106.94	53.107	1	672920			38401	972	22423	22424	46411	46411					0.048526069916078995
RPAPPAQSL	9	Unmodified	_RPAPPAQSL_					0	0	0		nc|ENSG00000072134|O95208-5|EPN2;nc|ENSG00000072134|O95208-3|EPN2;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000072134|ENST00000314728|EPN2	nc|ENSG00000072134|O95208-5|EPN2	nc|ENSG00000072134|O95208-5|EPN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7666015625	2	468.766709	935.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.537	1	27.525	27.025	28.025	-0.01156								0	0	0	0.00049698	1	4684	4684		103.42	57.72	1				38402	972	22423	22424	46412	46412					0.048526069916078995
RPAPPPEAL	9	Unmodified	_RPAPPPEAL_					0	0	0		ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	ENSG00000100335|ENST00000325301|MIEF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2693786621094	2	474.269084	946.523616	0.22394	0.00010621	-0.34178	-0.0001621	-0.11784	-5.589E-05	474.26894700624763	31.945	0.78122	31.945	31.719	32.5	0					43	27	2	0	0	0	0.12642	1	6010	6010		34.402	5.3201	1	252700			38403	1571	22424	22425	46413	46413					0.04821491134362077
RPAPPPPTV	9	Unmodified	_RPAPPPPTV_					0	0	0		nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;ENST00000464824.2_1_1:155034702-155034975:+|nuORF;nc|ENSG00000143537|Q13444-11|ADAM15	nc|ENSG00000143537|Q13444-2|ADAM15	nc|ENSG00000143537|Q13444-2|ADAM15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2723693847656	2	466.271627	930.528701	-0.0031218	-1.4556E-06	0.23028	0.00010737	0.22716	0.00010592	466.2716091714833	28.708	0.55393	28.709	28.466	29.02	0.0004673					32	19	2	0	0	0	0.063853	1	5022	5022		47.749	3.8904	1	107470			38404	4526	22425	22426	46414	46414					0.06065794996993645
RPAPPPSQK	9	Unmodified	_RPAPPPSQK_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP;ENST00000475896.5_1_3:100583650-100712249:-|nuORF	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.27996826171875	2	489.279983	976.545414	-0.042665	-2.0875E-05	0.02712	1.3269E-05	-0.015545	-7.606E-06	489.279917125804	12.614	0.47624	12.614	12.397	12.874	0					37	15	3	0	0	0	0.17555	1	176	176		27.223	11.074	1	106240			38405	5110	22426	22427	46415	46415					0.05620295882943083
RPAPPPSQK	9	Unmodified	_RPAPPPSQK_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP;ENST00000475896.5_1_3:100583650-100712249:-|nuORF	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2799987792969	2	489.279983	976.545414	0.012102	5.9214E-06	0.16344	7.9968E-05	0.17554	8.5889E-05	489.2799648266625	12.605	0.54131	12.508	12.356	12.897	-0.096607					41	18	3	0	0	0	0.2422	1	182	182		19.362	6.3195	1	107920			38406	5110	22426	22427	46416	46416					0.05620295882943083
RPAPPPSQK	9	Unmodified	_RPAPPPSQK_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP;ENST00000475896.5_1_3:100583650-100712249:-|nuORF	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.27984619140625	2	489.279983	976.545414	-0.11757	-5.7525E-05	0.26627	0.00013028	0.1487	7.2757E-05	489.27997911496055	12.666	0.44529	12.598	12.406	12.851	-0.067496					34	14	3	0	0	0	0.14646	1	188	188		43.772	21.036	1	118420			38407	5110	22426	22427	46417	46417					0.05620295882943083
RPAPRALVL	9	Unmodified	_RPAPRALVL_					0	0	0		ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.228759765625	2	496.821818	991.629084	0.92177	0.00045796	-0.28202	-0.00014012	0.63975	0.00031784	496.82165934700333	33.837	0.8372	33.903	33.624	34.461	0.06636					60	29	3	0	0	0	0.1854	1	6582	6582		19.257	0	1	426820			38408	4437	22427	22428	46418	46418					0.1329345205062964
RPAPRALVL	9	Unmodified	_RPAPRALVL_					0	0	0		ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2288818359375	2	496.821818	991.629084	0.21427	0.00010645	0.32897	0.00016344	0.54323	0.00026989	496.82192719565876	33.803	0.88946	33.87	33.633	34.522	0.066704					60	31	3	0	0	0	0.1524	1	6578	6578		25.399	0	1	534230			38409	4437	22427	22428	46419	46419					0.1329345205062964
RPAPRAPAP	9	Unmodified	_RPAPRAPAP_					0	0	0		nc|ENSG00000180739|Q9H228-2|S1PR5	nc|ENSG00000180739|Q9H228-2|S1PR5	nc|ENSG00000180739|Q9H228-2|S1PR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.26397705078125	2	466.774868	931.535184	-0.076606	-3.5758E-05	-0.31111	-0.00014522	-0.38771	-0.00018098	466.77469211992104	17.935	0.61443	17.935	17.628	18.243	0					46	20	3	0	0	0	0.2451	1	1766	1766		15.847	0	1	147830			38410	12868	22428	22429	46420	46420					0.06667732948358207
RPAPRAPAP	9	Unmodified	_RPAPRAPAP_					0	0	0		nc|ENSG00000180739|Q9H228-2|S1PR5	nc|ENSG00000180739|Q9H228-2|S1PR5	nc|ENSG00000180739|Q9H228-2|S1PR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.26416015625	2	466.774868	931.535184	-0.002592	-1.2099E-06	-0.14947	-6.9771E-05	-0.15207	-7.0981E-05	466.77468515758886	18.047	0.66591	17.989	17.707	18.372	-0.058172					53	23	3	0	0	0	0.23784	1	1849	1849		19.257	0	1	146670			38411	12868	22428	22429	46421	46421					0.06667732948358207
RPAQFLPEM	9	Oxidation (M)	_RPAQFLPEM(Oxidation (M))_		RPAQFLPEM(1)		RPAQFLPEM(68)	0	0	1		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.779296875	2	552.778959	1103.54336	0.47492	0.00026253	0.24997	0.00013818	0.72489	0.0004007	552.7788999800525	40.604	0.81268	40.604	40.226	41.039	0					77	29	3	0	0	0	0.017549	2	8653	8653;8709		67.838	53.932	1	728350			38412	3610	22429	22430	46422;46423	46422		458			-0.00426500917183148
RPAQFLPEM	9	Oxidation (M)	_RPAQFLPEM(Oxidation (M))_		RPAQFLPEM(1)		RPAQFLPEM(68)	0	0	1		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7791748046875	2	552.778959	1103.54336	0.44446	0.00024569	0.013663	7.5528E-06	0.45812	0.00025324	552.7789544156251	40.446	0.76612	40.545	40.146	40.912	0.099407					68	27	4	0	0	0	0.017549	1	8586	8586		67.838	53.932	1	810990			38413	3610	22429	22430	46424	46424		458			-0.00426500917183148
RPAQGVVTTL	10	Unmodified	_RPAQGVVTTL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.3071899414062	2	521.306198	1040.59784	0.54045	0.00028174	0.15919	8.2984E-05	0.69964	0.00036472	521.3061691650779	36.377	0.58734	36.377	36.2	36.787	0					46	20	3	0	0	0	0.11865	1	7330	7330		43.982	2.0263	1	1117900			38414	2642	22430	22431	46425	46425					0.07916834225898128
RPAQLHIGF	9	Unmodified	_RPAQLHIGF_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7957763671875	2	519.795801	1037.57705	0.33057	0.00017183	0.0076688	3.9862E-06	0.33824	0.00017581	519.7957787833848	41.885	0.68002	41.885	41.675	42.355	0					64	28	3	0	0	0	0.0046874	2	9088	9037;9088		88.904	56.598	1	5277100			38415	3533	22431	22432	46426;46427	46427					0.05976288636884419
RPAQLHIGF	9	Unmodified	_RPAQLHIGF_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7962036132812	2	519.795801	1037.57705	0.35833	0.00018626	0.33594	0.00017462	0.69427	0.00036088	519.7961312378575	41.646	0.78888	41.736	41.511	42.3	0.090248					62	32	2	0	0	0	0.0032391	3	9001	8962;9001;9049		100.37	71.885	1	5761500			38416	3533	22431	22432	46428;46429;46430	46429					0.05976288636884419
RPAQLHIGF	9	Unmodified	_RPAQLHIGF_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.796630859375	2	519.795801	1037.57705	0.64451	0.00033501	0.31235	0.00016236	0.95685	0.00049737	519.7960256278898	41.586	0.76009	41.683	41.448	42.208	0.096622					65	30	3	0	0	0	0.0046874	2	8986	8944;8986		88.904	60.417	1	5881200			38417	3533	22431	22432	46431;46432	46432					0.05976288636884419
RPAQVSQPF	9	Unmodified	_RPAQVSQPF_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;ENST00000498596.5_1_1:171556213-171560772:+|nuORF	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2777709960938	2	515.277441	1028.54033	0.20373	0.00010498	0.089385	4.6058E-05	0.29311	0.00015103	515.2773030174133	33.206	0.77943	33.206	32.895	33.674	0					64	27	4	0	0	0	0.032589	1	6398	6398		59.368	19.419	1	573850			38418	12673	22432	22433	46433	46433					0.027199920203202055
RPAQVSQPF	9	Unmodified	_RPAQVSQPF_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;ENST00000498596.5_1_1:171556213-171560772:+|nuORF	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2776489257812	2	515.277441	1028.54033	0.17808	9.1758E-05	0.28888	0.00014885	0.46696	0.00024061	515.277379946543	33.072	0.68731	33.127	32.786	33.473	0.055309					57	24	3	0	0	0	0.038291	1	6365	6365		57.249	28.168	1	502060			38419	12673	22432	22433	46434	46434					0.027199920203202055
RPAQVSQPF	9	Unmodified	_RPAQVSQPF_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;ENST00000498596.5_1_1:171556213-171560772:+|nuORF	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2777099609375	2	515.277441	1028.54033	0.1154	5.9463E-05	0.34724	0.00017892	0.46264	0.00023839	515.277458302251	33.069	0.74732	33.123	32.818	33.565	0.054371					58	26	3	0	0	0	0.037019	2	6365	6365;6429		57.722	21.595	1	581590			38420	12673	22432	22433	46435;46436	46435					0.027199920203202055
RPARARPEL	9	Unmodified	_RPARARPEL_					0	0	0			REV__ENST00000290730.11_1_22:24179058-24180975:-|nuORF	REV__ENST00000290730.11_1_22:24179058-24180975:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3174438476562	2	533.317432	1064.62031	0.20164	0.00010754	-0.18528	-9.8812E-05	0.016362	8.7262E-06	533.3173644055628	15.102	0.43232	15.102	14.949	15.382	0					31	14	3	0	0	0	0.31417	1	926	926		6.7232	0	1	125460	+		38421	19752	22433	22434	46437	46437					0.09058478414158344
RPAREAKL	8	Unmodified	_RPAREAKL_					0	0	0			REV__ENSG00000125633|ENST00000376300|CCDC93	REV__ENSG00000125633|ENST00000376300|CCDC93	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.8004150390625	2	470.787976	939.561398	0.041554	1.9563E-05	-0.61095	-0.00028763	-0.56939	-0.00026806	470.78800307003576	17.02	1.4385	17.02	16.72	18.158	0					141	49	6	0	0	0	0.45169	1	1776	1776		5.2307	0	1	6838000	+		38422	15273	22434	22435	46438	46438					0.0892000211983941
RPARILSLF	9	Unmodified	_RPARILSLF_					0	0	0			REV__ENSG00000124302|ENST00000650847|CHST8	REV__ENSG00000124302|ENST00000650847|CHST8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.8604736328125	2	536.834926	1071.6553	0.56317	0.00030233	0.06639	3.564E-05	0.62956	0.00033797	536.8350183537599	53.311	0.47827	53.302	53.004	53.482	-0.0096054					26	17	2	0	0	0	0.24289	1	12596	12596		18.146	0	1	414650	+		38423	15228	22435	22436	46439	46439					0.12233721222128224
RPARKSVTI	9	Unmodified	_RPARKSVTI_					0	0	0			REV__ENSG00000132740|ENST00000255078|IGHMBP2	REV__ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.8034057617188	2	514.322183	1026.62981	0.69908	0.00035955	0.93118	0.00047893	1.6303	0.00083848	514.3226373650864	34.042	0.49191	34.042	33.728	34.22	0					28	17	2	0	0	0	0.24848	1	6631	6631		13.906	3.8321	1	166360	+		38424	15586	22436	22437	46440	46440					0.11756246699701478
RPARKSVTI	9	Unmodified	_RPARKSVTI_					0	0	0			REV__ENSG00000132740|ENST00000255078|IGHMBP2	REV__ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8033447265625	2	514.322183	1026.62981	0.067504	3.4719E-05	0.9605	0.00049401	1.028	0.00052873	514.3225541039503	33.874	0.52415	33.941	33.685	34.209	0.066704					28	18	2	0	0	0	0.23784	1	6584	6584		19.257	4.4187	1	150410	+		38425	15586	22436	22437	46441	46441					0.11756246699701478
RPARLLPLS	9	Unmodified	_RPARLLPLS_					0	0	0			REV__ENST00000427497.3_1_17:17131347-17136121:-|nuORF	REV__ENST00000427497.3_1_17:17131347-17136121:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.8271789550781	2	511.827101	1021.63965	0.45005	0.00023035	0.072561	3.7139E-05	0.52261	0.00026749	511.827027898922	49.291	1.2611	49.291	48.582	49.843	0					107	45	3	0	0	0	0.18208	1	11432	11432		26.268	0	1	1254600	+		38426	20578	22437	22438	46442	46442					0.12969434705098593
RPARLMLIPRS	11	Unmodified	_RPARLMLIPRS_					0	0	0			REV__nc|ENSG00000163534|Q96LA6-3|FCRL1	REV__nc|ENSG00000163534|Q96LA6-3|FCRL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2677917480469	3	437.267691	1308.78124	0.17842	7.8016E-05	0.42325	0.00018507	0.60167	0.00026309	437.2678667037949	44.808	1.1647	44.877	44.463	45.628	0.068569					169	41	5	0	0	0	0.45422	1	10142	10142		4.1166	1.8639	1	4892200	+		38427	17067	22438	22439	46443	46443					0.13920484735899663
RPARLMLIPRS	11	Unmodified	_RPARLMLIPRS_					0	0	0			REV__nc|ENSG00000163534|Q96LA6-3|FCRL1	REV__nc|ENSG00000163534|Q96LA6-3|FCRL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2679138183594	3	437.267691	1308.78124	0.17291	7.5608E-05	0.40966	0.00017913	0.58257	0.00025474	437.2678696804243	44.898	1.2356	44.973	44.449	45.685	0.075047					200	45	5	0	0	0	0.45422	1	10147	10147		4.1166	0.7609	1	4147200	+		38428	17067	22438	22439	46444	46444					0.13920484735899663
RPARQFEWN	9	Unmodified	_RPARQFEWN_					0	0	0			REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF	REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.3036499023438	2	602.304521	1202.59449	0.27491	0.00016558	-1.3306	-0.00080142	-1.0557	-0.00063584	602.3034298585052	23.291	0.62409	23.291	22.969	23.593	0					50	21	3	0	0	0	0.31763	2	3389	3389;3450		6.2058	2.9245	1	249890	+		38429	22309	22439	22440	46445;46446	46445					0.0012958417189565807
RPARQFEWN	9	Unmodified	_RPARQFEWN_					0	0	0			REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF	REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	602.304521	1202.59449	0.27491	0.00016558	-1.3306	-0.00080142	-1.0557	-0.00063584	602.3034298585052	23.291	0.62409	23.291	22.969	23.593	0	-0.04189	0.00017866	NaN	6.2058	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249890	+		38430	22309	22439	22440							0.0012958417189565807
RPARQFEWN	9	Unmodified	_RPARQFEWN_					0	0	0			REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF	REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	602.304521	1202.59449	0.35877	0.00021609	-1.6218	-0.00097685	-1.2631	-0.00076076	602.3033264100836	23.413	0.74649	23.325	22.967	23.713	-0.087608	-0.007806	-0.0001722	NaN	6.2058	58	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245790	+		38431	22309	22439	22440							0.0012958417189565807
RPARQFEWN	9	Unmodified	_RPARQFEWN_					0	0	0			REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF	REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	602.304521	1202.59449	0.35924	0.00021637	-1.4467	-0.00087136	-1.0875	-0.00065499	602.3034185071283	23.428	0.6451	23.383	23.06	23.705	-0.044865	0.049696	3.8765E-05	NaN	6.2058	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216590	+		38432	22309	22439	22440							0.0012958417189565807
RPARTPGPRP	10	Unmodified	_RPARTPGPRP_					0	0	0			REV__ENST00000319080.7_12:122516865-122517156:+|nuORF	REV__ENST00000319080.7_12:122516865-122517156:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3383178710938	2	552.822881	1103.63121	0.50316	0.00027816	-0.39462	-0.00021815	0.10854	6.0004E-05	552.8222564287698	88.217	0.10864	88.217	88.165	88.273	0					9	5	2	0	0	0	0.31143	1	23285	23285		17.113	0	1	61249	+		38433	19955	22440	22441	46447	46447					0.08353880788445167
RPASAALRRSF	11	Unmodified	_RPASAALRRSF_					0	0	0		nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2;ENST00000443006.5_1_7:75677403-75686760:+|nuORF;ENST00000461665.5_1_7:75677478-75687456:+|nuORF	nc|ENSG00000146701|P40926-2|MDH2	nc|ENSG00000146701|P40926-2|MDH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2385559082031	3	411.238789	1230.69454	-0.19239	-7.9117E-05	-0.36098	-0.00014845	-0.55337	-0.00022757	411.23856014343596	23.752	0.71407	23.752	23.48	24.194	0					64	24	4	0	0	0	0.37255	2	3536	3536;3554		14.838	6.3936	1	411240			38434	4723	22441	22442	46448;46449	46448					0.0884182150568904
RPASAALRRSF	11	Unmodified	_RPASAALRRSF_					0	0	0		nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2;ENST00000443006.5_1_7:75677403-75686760:+|nuORF;ENST00000461665.5_1_7:75677478-75687456:+|nuORF	nc|ENSG00000146701|P40926-2|MDH2	nc|ENSG00000146701|P40926-2|MDH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.238789	1230.69454	0.11184	4.5993E-05	-0.84655	-0.00034813	-0.73471	-0.00030214	411.23838052489157	23.928	1.0813	23.855	23.563	24.645	-0.072559	0.051845	-0.00033559	NaN	14.838	88	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376340			38435	4723	22441	22442							0.0884182150568904
RPASLLLLL	9	Unmodified	_RPASLLLLL_					0	0	0		ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1;ENST00000465856.5_1_6:26422331-26423690:+|nuORF;nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;nc|ENSG00000291104|Q96KV6|BTN2A3P	ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3346862792969	2	498.334227	994.653902	0.27628	0.00013768	0.57894	0.00028851	0.85522	0.00042619	498.33442362446067	73.704	1.3495	73.756	72.947	74.296	0.052361					110	47	4	0	0	0	0.018449	1	18841	18841		66.457	6.3828	1	2825200			38436	2460;13013	22442	22443	46450	46450					0.15636087133384535
RPASLLLLL	9	Unmodified	_RPASLLLLL_					0	0	0		ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1;ENST00000465856.5_1_6:26422331-26423690:+|nuORF;nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;nc|ENSG00000291104|Q96KV6|BTN2A3P	ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.33441162109375	2	498.334227	994.653902	0.35811	0.00017846	-0.26457	-0.00013184	0.093538	4.6613E-05	498.33442301344934	67.987	2.4153	67.971	67.672	70.087	-0.016296					236	86	5	0	0	0	0.069366	1	17175	17175		45.7	1.9272	1	33486000			38437	2460;13013	22442	22443	46451	46451					0.15636087133384535
RPASLLLLL	9	Unmodified	_RPASLLLLL_					0	0	0		ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1;ENST00000465856.5_1_6:26422331-26423690:+|nuORF;nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;nc|ENSG00000291104|Q96KV6|BTN2A3P	ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.334716796875	2	498.334227	994.653902	0.27089	0.00013499	0.53427	0.00026625	0.80516	0.00040124	498.3343916071678	73.759	1.2008	73.728	73.041	74.241	-0.030655					96	43	4	0	0	0	0.10059	1	18880	18880		38.176	3.7738	1	2643500			38438	2460;13013	22442	22443	46452	46452					0.15636087133384535
RPASRFEVL	9	Unmodified	_RPASRFEVL_					0	0	0		ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.806396484375	2	537.806365	1073.59818	0.4399	0.00023658	-0.36149	-0.00019441	0.07841	4.217E-05	537.8060847083023	35.569	0.65633	35.569	35.276	35.932	0					42	23	2	0	0	0	0.19083	1	7124	7124		24.991	6.6179	1	504190			38439	3127	22443	22444	46453	46453					0.0643225394574074
RPASRFEVL	9	Unmodified	_RPASRFEVL_					0	0	0		ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.8064575195312	2	537.806365	1073.59818	0.099809	5.3678E-05	0.1953	0.00010504	0.29511	0.00015871	537.8063136190011	35.443	0.66495	35.523	35.197	35.862	0.079708					37	23	2	0	0	0	0.22935	1	7127	7127		19.362	1.227	1	539030			38440	3127	22443	22444	46454	46454					0.0643225394574074
RPASRFEVL	9	Unmodified	_RPASRFEVL_					0	0	0		ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	537.806365	1073.59818	0.34675	0.00018648	0.041348	2.2237E-05	0.3881	0.00020872	537.8062838751472	35.492	0.63223	35.572	35.265	35.897	0.079895	0.017215	0.0001246	NaN	24.991	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453030			38441	3127	22443	22444							0.0643225394574074
RPASRFPTL	9	Unmodified	_RPASRFPTL_					0	0	0		ENST00000328086.11_1_16:25268718-25268799:-|nuORF	ENST00000328086.11_1_16:25268718-25268799:-|nuORF	ENST00000328086.11_1_16:25268718-25268799:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.80126953125	2	522.801083	1043.58761	0.45837	0.00023963	-0.81268	-0.00042487	-0.35432	-0.00018524	522.8010239135347	30.743	0.56016	30.743	30.473	31.033	0					46	19	3	0	0	0	0.22935	1	5674	5674		19.362	3.2128	1	292600			38442	9430	22444	22445	46455	46455					0.0675627129132863
RPASRFPTL	9	Unmodified	_RPASRFPTL_					0	0	0		ENST00000328086.11_1_16:25268718-25268799:-|nuORF	ENST00000328086.11_1_16:25268718-25268799:-|nuORF	ENST00000328086.11_1_16:25268718-25268799:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8013305664062	2	522.801083	1043.58761	0.26087	0.00013638	-0.013029	-6.8118E-06	0.24784	0.00012957	522.8011925516935	30.709	0.73562	30.737	30.505	31.241	0.027157					49	26	3	0	0	0	0.25112	1	5656	5656		16.149	0	1	426640			38443	9430	22444	22445	46456	46456					0.0675627129132863
RPASRLPS	8	Unmodified	_RPASRLPS_					0	0	0			REV__ENST00000257897.7_2_12:58120030-58120555:-|nuORF	REV__ENST00000257897.7_2_12:58120030-58120555:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.2585754394531	2	442.259051	882.503549	0.17521	7.7489E-05	-0.89001	-0.00039362	-0.7148	-0.00031613	442.25854098723335	20.137	1.2794	20.137	19.493	20.772	0					90	46	3	0	0	0	0.20663	1	2419	2419		41.84	3.8656	1	519700	+		38444	19564	22445	22446	46457	46457					0.05759740194423557
RPASRPTV	8	Unmodified	_RPASRPTV_					0	0	0			REV__ENST00000466620.5_1_20:3653963-3654391:-|nuORF	REV__ENST00000466620.5_1_20:3653963-3654391:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7181091308594	2	442.259051	882.503549	0.17521	7.7489E-05	-0.89001	-0.00039362	-0.7148	-0.00031613	442.25854098723335	20.137	1.2794	20.137	19.493	20.772	0					90	46	3	0	0	0	0.3403	1	2507	2507		17.113	0	1	519700	+		38445	21288	22446	22447	46458	46458					0.057597401944121884
RPASRPTV	8	Unmodified	_RPASRPTV_					0	0	0			REV__ENST00000466620.5_1_20:3653963-3654391:-|nuORF	REV__ENST00000466620.5_1_20:3653963-3654391:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.71820068359375	2	442.259051	882.503549	0.30462	0.00013472	-0.94882	-0.00041962	-0.64419	-0.0002849	442.25850482332106	20.371	0.9934	20.261	19.735	20.729	-0.11003					83	35	3	0	0	0	0.32937	1	2563	2563		22.736	0	1	711940	+		38446	21288	22446	22447	46459	46459					0.057597401944121884
RPAYLVTL	8	Unmodified	_RPAYLVTL_					0	0	0		ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602574.5_1_10:22607528-22607842:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7816162109375	2	466.781828	931.549102	0.034802	1.6245E-05	-0.32942	-0.00015377	-0.29462	-0.00013752	466.78152021809666	52.388	0.69383	52.388	52.074	52.767	0					43	24	2	0	0	0	0.13277	1	12312	12312		54.774	12.679	1	603410			38447	4814	22447	22448	46460	46460					0.08058965656812234
RPAYLVTL	8	Unmodified	_RPAYLVTL_					0	0	0		ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602574.5_1_10:22607528-22607842:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7822570800781	2	466.781828	931.549102	0.083713	3.9076E-05	-0.12943	-6.0417E-05	-0.04572	-2.1341E-05	466.78165936978706	52.342	0.73413	52.392	52.06	52.794	0.050571					41	26	2	0	0	0	0.32099	1	12303	12303		25.399	3.6527	1	583010			38448	4814	22447	22448	46461	46461					0.08058965656812234
RPAYLVTL	8	Unmodified	_RPAYLVTL_					0	0	0		ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602574.5_1_10:22607528-22607842:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7818908691406	2	466.781828	931.549102	0.069494	3.2438E-05	0.07634	3.5634E-05	0.14583	6.8072E-05	466.7816964162943	52.431	0.49413	52.43	52.194	52.688	-0.00081253					31	17	2	0	0	0	0.20083	1	12306	12306		61.357	19.263	1	618940			38449	4814	22447	22448	46462	46462					0.08058965656812234
RPAYRKVFL	9	Unmodified	_RPAYRKVFL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3482055664062	2	575.3482	1148.68185	0.29308	0.00016862	0.091908	5.2879E-05	0.38499	0.0002215	575.3482007943053	30.296	0.82984	30.296	30.088	30.918	0					65	29	3	0	0	0	0.051692	1	5518	5518		52.268	36.421	1	635850			38450	8157	22448	22449	46463	46463					0.11345410113472099
RPAYRKVFL	9	Unmodified	_RPAYRKVFL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3477783203125	2	575.3482	1148.68185	0.40459	0.00023278	0.12587	7.2419E-05	0.53046	0.0003052	575.348253732423	30.345	0.76517	30.373	30.103	30.869	0.027946					68	26	3	0	0	0	0.051692	2	5507	5507;5553		52.268	31.815	1	651790			38451	8157	22448	22449	46464;46465	46464					0.11345410113472099
RPAYRKVFL	9	Unmodified	_RPAYRKVFL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.348388671875	2	575.3482	1148.68185	-0.036674	-2.11E-05	0.74006	0.00042579	0.70339	0.00040469	575.3486675714634	30.375	0.67653	30.402	30.16	30.836	0.027157					61	23	3	0	0	0	0.068501	1	5512	5512		46.021	32.115	1	634530			38452	8157	22448	22449	46466	46466					0.11345410113472099
RPAYSVHL	8	Unmodified	_RPAYSVHL_					0	0	0			REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7793884277344	2	471.761426	941.5083	-0.17275	-8.1497E-05	-3.2066	-0.0015127	-3.3793	-0.0015942	471.75918628749616	13.333	0.29583	13.234	12.98	13.276	-0.099291					11	9	2	0	0	0	0.34408	1	353	353		2.3027	1.5091	1	13429	+		38453	14013	22449	22450	46467	46467					0.03520624337170375
RPCRREPL	8	Unmodified	_RPCRREPL_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7848510742188	2	513.78491	1025.55527	0.44159	0.00022688	-0.82431	-0.00042352	-0.38272	-0.00019664	513.7844080167052	79.352	0.81695	79.352	79.08	79.897	0					64	32	3	0	0	0	0.4397	1	20579	20579		9.3474	0.75416	1	369950			38454	5124	22450	22451	46468	46468					0.04351160616670313
RPCRWARK	8	Unmodified	_RPCRWARK_					0	0	0		ENST00000431144.1_1_6:138178975-138182125:-|nuORF;ENST00000606327.1_1_6:138178975-138179167:-|nuORF	ENST00000431144.1_1_6:138178975-138182125:-|nuORF	ENST00000431144.1_1_6:138178975-138182125:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7860717773438	2	536.800894	1071.58724	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.541	1	25.51	25.01	26.01	-0.031408								0	0	0	0.37078	1	4082	4082		5.2307	0.47466	1				38455	10472	22451	22452	46469	46469					0.05430573090461621
RPDALSLPR	9	Unmodified	_RPDALSLPR_					0	0	0		nc|ENSG00000074047|P10070-2|GLI2;nc|ENSG00000074047|P10070-1|GLI2;ENSG00000074047|ENST00000361492|GLI2;nc|ENSG00000074047|P10070|GLI2;nc|ENSG00000074047|P10070-4|GLI2;nc|ENSG00000074047|P10070-3|GLI2;ENST00000452692.5_1_2:121728002-121748192:+|nuORF;ENST00000438299.5_1_2:121728002-121748192:+|nuORF	nc|ENSG00000074047|P10070-2|GLI2	nc|ENSG00000074047|P10070-2|GLI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7984008789062	2	512.79854	1023.58253	0.0071182	3.6502E-06	0.057607	2.9541E-05	0.064725	3.3191E-05	512.7985583440403	24.618	0.67714	24.587	24.344	25.021	-0.031408					43	22	3	0	0	0	0.24993	1	3809	3809		13.042	2.2185	1	159290			38456	1011	22452	22453	46470	46470					0.0716796742869974
RPDAPSPQKAA	11	Unmodified	_RPDAPSPQKAA_					0	0	0			REV__ENST00000413209.6_1_22:30091232-30091397:+|nuORF	REV__ENST00000413209.6_1_22:30091232-30091397:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3037719726562	2	569.304187	1136.59382	0.44937	0.00025583	-0.43603	-0.00024823	0.013339	7.5941E-06	569.3038763937842	19.996	0.56981	19.88	19.612	20.182	-0.11592					52	19	4	0	0	0	0.46969	1	2482	2482		2.086	2.086	1	315540	+		38457	20788	22453	22454	46471	46471					0.03098744732187697
RPDATKVLIII	11	Unmodified	_RPDATKVLIII_					0	0	0		nc|ENSG00000005844|P20701-3|ITGAL;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL	nc|ENSG00000005844|P20701-3|ITGAL	nc|ENSG00000005844|P20701-3|ITGAL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.89453125	2	619.89518	1237.77581	0.35619	0.0002208	-0.082128	-5.091E-05	0.27406	0.00016989	619.8952773798984	58.287	0.45605	58.287	58.075	58.531	0					22	15	2	0	0	0	0.40701	1	14188	14188		10.315	6.1257	1	276520			38458	344	22454	22455	46472	46472					0.16643084425095367
RPDATKVLIII	11	Unmodified	_RPDATKVLIII_					0	0	0		nc|ENSG00000005844|P20701-3|ITGAL;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL	nc|ENSG00000005844|P20701-3|ITGAL	nc|ENSG00000005844|P20701-3|ITGAL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8956298828125	2	619.89518	1237.77581	0.14653	9.0832E-05	0.12332	7.6447E-05	0.26985	0.00016728	619.8953449896426	58.218	0.47087	58.303	57.997	58.468	0.085621					24	16	2	0	0	0	0.20863	1	14068	14068		30.431	12.058	1	237810			38459	344	22454	22455	46473	46473					0.16643084425095367
RPDATKVLIII	11	Unmodified	_RPDATKVLIII_					0	0	0		nc|ENSG00000005844|P20701-3|ITGAL;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL	nc|ENSG00000005844|P20701-3|ITGAL	nc|ENSG00000005844|P20701-3|ITGAL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	619.89518	1237.77581	0.53868	0.00033393	-0.30812	-0.00019101	0.23056	0.00014292	619.8950211643245	58.266	0.40897	58.248	58.033	58.442	-0.0172	-0.031217	-0.00025889	NaN	30.431	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237670			38460	344	22454	22455							0.16643084425095367
RPDDKRILEF	10	Unmodified	_RPDDKRILEF_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.23828125	3	430.238455	1287.69353	-0.1248	-5.3692E-05	-0.50844	-0.00021875	-0.63323	-0.00027244	430.2383160551865	38.155	0.75084	38.155	37.846	38.597	0					70	26	4	0	0	0	0.078673	2	7961	7908;7961		52.735	41.67	1	2065100			38461	8071	22455	22456	46474;46475	46475					0.06119562346134444
RPDDKRILEF	10	Unmodified	_RPDDKRILEF_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.2383117675781	3	430.238455	1287.69353	0.0094534	4.0672E-06	-0.5802	-0.00024962	-0.57074	-0.00024556	430.2382239394729	38.081	0.85193	38.172	37.821	38.673	0.090881					70	30	3	0	0	0	0.047796	3	7923	7875;7923;7977		59.496	47.321	1	1946900			38462	8071	22455	22456	46476;46477;46478	46477					0.06119562346134444
RPDDKRILEF	10	Unmodified	_RPDDKRILEF_					0	0	0		nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA	nc|ENSG00000198408|O60502-2|OGA	nc|ENSG00000198408|O60502-2|OGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.2383728027344	3	430.238455	1287.69353	-0.10272	-4.4195E-05	-0.55914	-0.00024056	-0.66186	-0.00028476	430.23825609807864	38	0.85427	38.098	37.796	38.65	0.097527					83	30	4	0	0	0	0.071714	3	7862	7862;7942;7947		54.259	36.396	1	1930500			38463	8071	22455	22456	46479;46480;46481	46479					0.06119562346134444
RPDDRSQGAII	11	Unmodified	_RPDDRSQGAII_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.32568359375	2	614.32565	1226.63675	0.15006	9.2188E-05	-0.01051	-6.4567E-06	0.13955	8.5732E-05	614.3255746567914	26.876	1.0293	26.876	26.586	27.615	0					57	24	4	0	0	0	0.11084	1	4468	4468		39.213	29.669	1	314930			38464	2591	22456	22457	46482	46482					0.03249514789604291
RPDDRSQGAII	11	Unmodified	_RPDDRSQGAII_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	614.32565	1226.63675	0.16113	9.8984E-05	0.23641	0.00014523	0.39753	0.00024422	614.3257378951046	26.878	0.72708	26.857	26.564	27.291	-0.021412	-0.010587	0.00021256	NaN	39.213	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301280			38465	2591	22456	22457							0.03249514789604291
RPDDRSQGAII	11	Unmodified	_RPDDRSQGAII_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	614.32565	1226.63675	0.33021	0.00020286	0.024378	1.4976E-05	0.35459	0.00021783	614.3256432710848	26.881	0.71963	26.869	26.625	27.344	-0.011562	0.0015983	-4.7946E-05	NaN	39.213	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317760			38466	2591	22456	22457							0.03249514789604291
RPDERRFAVF	10	Unmodified	_RPDERRFAVF_					0	0	0		ENST00000560046.1_1_14:24586548-24588423:+|nuORF;nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.8467407226562	2	646.846553	1291.67855	0.75963	0.00049136	-0.13097	-8.4719E-05	0.62865	0.00040664	646.8463418155449	37.573	0.72234	37.573	37.342	38.064	0					57	25	4	0	0	0	0.14994	1	7756	7756		76.825	51.834	1	668570			38467	1643	22457	22458	46483	46483					0.04438115268794718
RPDERRFAVF	10	Unmodified	_RPDERRFAVF_					0	0	0		ENST00000560046.1_1_14:24586548-24588423:+|nuORF;nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.8468627929688	2	646.846553	1291.67855	0.44972	0.0002909	-0.0074042	-4.7894E-06	0.44232	0.00028611	646.8464928837741	37.517	0.68046	37.604	37.358	38.039	0.087406					58	24	3	0	0	0	0.017207	1	7727	7727		67.838	42.847	1	576860			38468	1643	22457	22458	46484	46484					0.04438115268794718
RPDERRFAVF	10	Unmodified	_RPDERRFAVF_					0	0	0		ENST00000560046.1_1_14:24586548-24588423:+|nuORF;nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.5667419433594	3	431.566794	1291.67855	0.020958	9.045E-06	-0.586	-0.0002529	-0.56504	-0.00024385	431.5666895816916	37.485	1.5871	37.572	37.193	38.78	0.08741					185	57	5	0	0	0	0.041185	1	7756	7756		60.943	42.57	1	9280900			38469	1643	22457	22458	46485	46485					0.04438115268794718
RPDERRFAVF	10	Unmodified	_RPDERRFAVF_					0	0	0		ENST00000560046.1_1_14:24586548-24588423:+|nuORF;nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	646.8475341796875	2	646.846553	1291.67855	0.37414	0.00024201	0.15014	9.7117E-05	0.52428	0.00033913	646.8466102761097	37.461	0.78725	37.554	37.302	38.089	0.093014					56	28	3	0	0	0	0.050002	1	7708	7708		59.368	28.1	1	626350			38470	1643	22457	22458	46486	46486					0.04438115268794718
RPDERRFAVF	10	Unmodified	_RPDERRFAVF_					0	0	0		ENST00000560046.1_1_14:24586548-24588423:+|nuORF;nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.56671142578125	3	431.566794	1291.67855	-0.045971	-1.984E-05	-0.4275	-0.00018449	-0.47347	-0.00020433	431.56673086206183	37.454	1.7191	37.547	37.17	38.889	0.093018					207	62	5	0	0	0	0.13383	1	7755	7755		57.477	43.259	1	9035400			38471	1643	22457	22458	46487	46487					0.04438115268794718
RPDGHIVSV	9	Unmodified	_RPDGHIVSV_					0	0	0		nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR	nc|ENSG00000141564|Q8N122-3|RPTOR	nc|ENSG00000141564|Q8N122-3|RPTOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2509765625	2	490.269616	978.524678	0.24628	0.00012074	2.826	0.0013855	3.0722	0.0015062	490.2695130069067	26.951	0.72869	26.93	26.592	27.321	-0.021412					52	25	3	0	0	0	0.25843	1	4494	4494		5.7319	0.97584	1	70898			38472	4395	22458	22459	46488	46488					0.03455705503279205
RPDGHQNNL	9	Unmodified	_RPDGHQNNL_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;KPNB1|p.A876Cfs*2|1|0.05|ENSG00000108424|chr17:47680663-47680664|-/GTGCT|frameshift_variant;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7575073242188	2	525.757404	1049.50025	0.187	9.8316E-05	0.0074344	3.9087E-06	0.19443	0.00010223	525.7573873410456	13.807	0.33204	13.807	13.66	13.992	0					29	11	3	0	0	0	0.20679	1	537	537		22.658	15.935	1	147860			38473	2185	22459	22460	46489	46489					-0.02251554650251819
RPDGHQNNL	9	Unmodified	_RPDGHQNNL_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;KPNB1|p.A876Cfs*2|1|0.05|ENSG00000108424|chr17:47680663-47680664|-/GTGCT|frameshift_variant;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7573852539062	2	525.757404	1049.50025	0.091183	4.794E-05	0.23271	0.00012235	0.32389	0.00017029	525.7574416640748	13.906	0.3584	13.801	13.633	13.991	-0.10466					29	12	3	0	0	0	0.07944	1	571	571		41.956	31.882	1	138080			38474	2185	22459	22460	46490	46490					-0.02251554650251819
RPDGHQNNL	9	Unmodified	_RPDGHQNNL_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;KPNB1|p.A876Cfs*2|1|0.05|ENSG00000108424|chr17:47680663-47680664|-/GTGCT|frameshift_variant;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7574462890625	2	525.757404	1049.50025	0.14959	7.8647E-05	0.049952	2.6262E-05	0.19954	0.00010491	525.75741610361	13.902	0.34923	13.836	13.687	14.037	-0.066068					25	11	3	0	0	0	0.22935	1	571	571		19.362	8.538	1	166050			38475	2185	22459	22460	46491	46491					-0.02251554650251819
RPDKRFRLAL	10	Unmodified	_RPDKRFRLAL_					0	0	0		ENST00000582274.1_1_17:61628029-61629753:+|nuORF;nc|ENSG00000136485|P61962-2|DCAF7;ENSG00000136485|ENST00000614556|DCAF7	ENST00000582274.1_1_17:61628029-61629753:+|nuORF	ENST00000582274.1_1_17:61628029-61629753:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.5953674316406	3	424.594684	1270.76222	-0.056604	-2.4034E-05	0.20927	8.8853E-05	0.15266	6.482E-05	424.59489734271995	33.353	1.8283	33.353	33.011	34.839	0					171	65	5	0	0	0	0.16374	3	6445	6445;6496;6539		37.075	26.759	1	4139700			38476	3977	22460	22461	46492;46493;46494	46492					0.13767271436518058
RPDKRFRLAL	10	Unmodified	_RPDKRFRLAL_					0	0	0		ENST00000582274.1_1_17:61628029-61629753:+|nuORF;nc|ENSG00000136485|P61962-2|DCAF7;ENSG00000136485|ENST00000614556|DCAF7	ENST00000582274.1_1_17:61628029-61629753:+|nuORF	ENST00000582274.1_1_17:61628029-61629753:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.5954284667969	3	424.594684	1270.76222	-0.028667	-1.2172E-05	0.21192	8.9981E-05	0.18325	7.7809E-05	424.59488288732706	33.224	1.3869	33.28	32.946	34.333	0.055309					153	49	5	0	0	0	0.21589	2	6403	6403;6453		30.703	23.666	1	4440800			38477	3977	22460	22461	46495;46496	46495					0.13767271436518058
RPDKRFRLAL	10	Unmodified	_RPDKRFRLAL_					0	0	0		ENST00000582274.1_1_17:61628029-61629753:+|nuORF;nc|ENSG00000136485|P61962-2|DCAF7;ENSG00000136485|ENST00000614556|DCAF7	ENST00000582274.1_1_17:61628029-61629753:+|nuORF	ENST00000582274.1_1_17:61628029-61629753:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.5954895019531	3	424.594684	1270.76222	-0.17052	-7.2401E-05	0.42672	0.00018118	0.2562	0.00010878	424.59498757422074	33.26	1.6076	33.32	33.019	34.626	0.059963					165	57	5	0	0	0	0.18709	2	6407	6407;6450		34.222	23.666	1	4582800			38478	3977	22460	22461	46497;46498	46497					0.13767271436518058
RPDLARRYL	9	Unmodified	_RPDLARRYL_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.840087890625	2	580.338364	1158.66217	0.19281	0.0001119	0.10988	6.3765E-05	0.30269	0.00017566	580.338631055696	31.685	0.42619	31.685	31.526	31.953	0					22	14	2	0	0	0	0.018449	1	5948	5948		66.457	24.617	1	554360			38479	1403	22461	22462	46499	46499					0.08919034102700607
RPDLARRYL	9	Unmodified	_RPDLARRYL_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	580.338364	1158.66217	0.28576	0.00016584	-0.49275	-0.00028596	-0.20699	-0.00012013	580.3384250537796	31.668	0.30789	31.711	31.574	31.882	0.042366	0.017478	-0.00028894	NaN	66.457	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	444780			38480	1403	22461	22462							0.08919034102700607
RPDLARRYL	9	Unmodified	_RPDLARRYL_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	580.338364	1158.66217	0.29552	0.0001715	-0.44839	-0.00026022	-0.15287	-8.8715E-05	580.3384308888171	31.644	0.57948	31.685	31.479	32.059	0.040991	-0.0087009	-0.00023744	NaN	66.457	25	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356720			38481	1403	22461	22462							0.08919034102700607
RPDLDEIH	8	Unmodified	_RPDLDEIH_					0	0	0		ENSG00000142684|ENST00000374266|ZNF593	ENSG00000142684|ENST00000374266|ZNF593	ENSG00000142684|ENST00000374266|ZNF593	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2667541503906	2	497.751256	993.487959	0.80582	0.0004011	-3.5318	-0.001758	-2.726	-0.0013569	497.74931892382426	37.429	0.57664	37.429	37.039	37.616	0					25	20	2	0	0	0	0.34247	1	7738	7738		4.756	0	1	157970			38482	4460	22462	22463	46500	46500					-0.00904591113294373
RPDLKRQSLL	10	Unmodified	_RPDLKRQSLL_					0	0	0		ENSG00000186130|ENST00000373659|ZBTB6	ENSG00000186130|ENST00000373659|ZBTB6	ENSG00000186130|ENST00000373659|ZBTB6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.2500305175781	3	409.250695	1224.73025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.283	1	30.31	29.81	30.81	0.027157								0	0	0	0.16507	1	5518	5518		44.207	23.336	1				38483	7593	22463	22464	46501	46501					0.12687858962704013
RPDLNHRFQ	9	Unmodified	_RPDLNHRFQ_					0	0	0		nc|ENSG00000213638|Q96EY9|ADAT3;ENSG00000213638|ENST00000329478|ADAT3	nc|ENSG00000213638|Q96EY9|ADAT3	nc|ENSG00000213638|Q96EY9|ADAT3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8091430664062	2	591.809971	1181.60539	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.657	1	41.657	41.157	42.157	0								0	0	0	0.23367	1	8997	8997		11.64	0	1				38484	8357	22464	22465	46502	46502					0.021849865461717854
RPDLRMAAI	9	Oxidation (M)	_RPDLRM(Oxidation (M))AAI_		RPDLRM(1)AAI		RPDLRM(65)AAI	0	0	1		ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.7924194335938	2	529.792401	1057.57025	0.35562	0.0001884	-0.29261	-0.00015502	0.063012	3.3383E-05	529.79235136882	31.12	0.93548	31.12	30.674	31.61	0					97	33	4	0	0	0	0.01909	2	5799	5750;5799		65.474	15.946	1	1154200			38485	2165	22465	22466	46503;46504	46504		264			0.043766076939846243
RPDLRMAAI	9	Oxidation (M)	_RPDLRM(Oxidation (M))AAI_		RPDLRM(1)AAI		RPDLRM(74)AAI	0	0	1		ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.7924194335938	2	529.792401	1057.57025	0.17826	9.4439E-05	-0.079386	-4.2058E-05	0.098871	5.2381E-05	529.7924371925803	31.116	1.0013	31.144	30.693	31.695	0.027946					104	35	4	0	0	0	0.013404	2	5798	5750;5798		74.2	16.951	1	1314100			38486	2165	22465	22466	46505;46506	46506		264			0.043766076939846243
RPDLRMAAI	9	Oxidation (M)	_RPDLRM(Oxidation (M))AAI_		RPDLRM(1)AAI		RPDLRM(62)AAI	0	0	1		ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7924194335938	2	529.792401	1057.57025	0.40366	0.00021386	-0.20859	-0.00011051	0.19507	0.00010335	529.7923182200932	31.052	1.1809	31.079	30.638	31.819	0.027157					92	42	3	0	0	0	0.026579	2	5776	5728;5776		61.602	15.862	1	1236600			38487	2165	22465	22466	46507;46508	46508		264			0.043766076939846243
RPDPLGPF	8	Unmodified	_RPDPLGPF_					0	0	0		ENST00000196061.4_1_1:12034865-12035195:+|nuORF	ENST00000196061.4_1_1:12034865-12035195:+|nuORF	ENST00000196061.4_1_1:12034865-12035195:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.266357421875	2	449.742702	897.470852	0.067768	3.0478E-05	-0.057521	-2.587E-05	0.010246	4.6081E-06	449.7425670443535	42.692	0.97631	42.692	42.33	43.307	0					93	35	4	0	0	0	0.33245	1	9340	9340		19.439	3.6708	1	381820			38488	8795	22466	22467	46509	46509					0.018015330715684286
RPDPPHPRE	9	Unmodified	_RPDPPHPRE_					0	0	0		nc|ENSG00000162706|Q8N126-3|CADM3;ENSG00000162706|ENST00000368125|CADM3;nc|ENSG00000162706|Q8N126-2|CADM3	nc|ENSG00000162706|Q8N126-3|CADM3	nc|ENSG00000162706|Q8N126-3|CADM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.7835693359375	2	550.783422	1099.55229	0.59792	0.00032932	-0.11904	-6.5568E-05	0.47887	0.00026376	550.7833673175521	19.968	0.60312	19.913	19.624	20.227	-0.055693					58	21	4	0	0	0	0.22674	1	2419	2419		22.736	3.4793	1	581080			38489	5604	22467	22468	46510	46510					0.006496087635014192
RPDPSHRA	8	Unmodified	_RPDPSHRA_					0	0	0		ENSG00000185905|ENST00000329410|C16orf54	ENSG00000185905|ENST00000329410|C16orf54	ENSG00000185905|ENST00000329410|C16orf54	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7167053222656	2	468.243932	934.473312	-0.16838	-7.8842E-05	2.7359	0.001281	2.5675	0.0012022	468.24512796161144	15.837	0.32254	15.837	15.624	15.947	0					19	11	3	0	0	0	0.34408	1	1164	1164		2.3027	0	1	20480			38490	7567	22468	22469	46511	46511					0.0034538152922323206
RPDQGLRA	8	Unmodified	_RPDQGLRA_					0	0	0			REV__ENST00000409618.5_1_2:220092732-220093819:-|nuORF	REV__ENST00000409618.5_1_2:220092732-220093819:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7735290527344	2	456.754133	911.493713	-0.062297	-2.8455E-05	-0.47334	-0.0002162	-0.53564	-0.00024465	456.75398647670846	15.65	0.28845	15.54	15.408	15.696	-0.10982					13	9	2	0	0	0	0.34367	1	1105	1105		4.3292	0	1	20267	+		38491	20766	22469	22470	46512	46512					0.03442552189039816
RPDQLGRLGSL	11	Unmodified	_RPDQLGRLGSL_					0	0	0		ENST00000329493.5_1_19:3543262-3543451:+|nuORF	ENST00000329493.5_1_19:3543262-3543451:+|nuORF	ENST00000329493.5_1_19:3543262-3543451:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.56671142578125	3	404.566683	1210.67822	0.057024	2.307E-05	0.2326	9.4104E-05	0.28963	0.00011717	404.56676834935917	29.825	0.75393	29.825	29.413	30.167	0					84	26	4	0	0	0	0.33189	1	5393	5393		11.631	0.11349	1	352070			38492	9438	22470	22471	46513	46513					0.08130695548948097
RPDQLGRLGSL	11	Unmodified	_RPDQLGRLGSL_					0	0	0		ENST00000329493.5_1_19:3543262-3543451:+|nuORF	ENST00000329493.5_1_19:3543262-3543451:+|nuORF	ENST00000329493.5_1_19:3543262-3543451:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.5668640136719	3	404.566683	1210.67822	-0.34756	-0.00014061	0.71034	0.00028738	0.36278	0.00014677	404.5669521190346	29.782	0.69991	29.795	29.507	30.207	0.013474					71	23	4	0	0	0	0.33189	1	5369	5369		11.631	0.11349	1	444190			38493	9438	22470	22471	46514	46514					0.08130695548948097
RPDRGRLGF	9	Unmodified	_RPDRGRLGF_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN;ENST00000533863.1_2_11:117073729-117073927:+|nuORF	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.3018188476562	2	537.301781	1072.58901	0.36982	0.0001987	-0.12975	-6.9717E-05	0.24007	0.00012899	537.3016436782843	23.981	0.9959	23.981	23.643	24.639	0					89	33	4	0	0	0	0.069366	1	3634	3634		45.7	15.063	1	909880			38494	4881	22471	22472	46515	46515					0.05561905380091048
RPDRGRLGF	9	Unmodified	_RPDRGRLGF_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN;ENST00000533863.1_2_11:117073729-117073927:+|nuORF	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.3018188476562	2	537.301781	1072.58901	0.3677	0.00019756	-0.09557	-5.135E-05	0.27213	0.00014621	537.3016625844791	24.146	1.0366	24.073	23.756	24.793	-0.072559					102	34	4	0	0	0	0.047483	2	3674	3674;3720		53.833	23.196	1	812290			38495	4881	22471	22472	46516;46517	46516					0.05561905380091048
RPDRGRLGF	9	Unmodified	_RPDRGRLGF_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN;ENST00000533863.1_2_11:117073729-117073927:+|nuORF	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.3018188476562	2	537.301781	1072.58901	0.45833	0.00024626	-0.10085	-5.4186E-05	0.35748	0.00019207	537.3016053654557	24.145	1.1489	24.106	23.765	24.914	-0.038927					104	39	4	0	0	0	0.014888	2	3673	3673;3717		71.922	25.901	1	723320			38496	4881	22471	22472	46518;46519	46518					0.05561905380091048
RPDRKQVEAIF	11	Unmodified	_RPDRKQVEAIF_					0	0	0			REV__ENST00000494718.5_1_X:51643260-51645023:+|nuORF	REV__ENST00000494718.5_1_X:51643260-51645023:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.58953857421875	3	453.589487	1357.74663	0.43924	0.00019924	-0.18784	-8.52E-05	0.25141	0.00011404	453.58934735820213	47.306	0.69744	47.306	46.961	47.658	0					70	24	4	0	0	0	0.41892	1	10717	10717		8.7518	1.2747	1	1271700	+		38497	18065	22472	22473	46520	46520					0.08206940128798124
RPDRKQVEAIF	11	Unmodified	_RPDRKQVEAIF_					0	0	0			REV__ENST00000494718.5_1_X:51643260-51645023:+|nuORF	REV__ENST00000494718.5_1_X:51643260-51645023:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.58929443359375	3	453.589487	1357.74663	0.14158	6.4218E-05	0.044538	2.0202E-05	0.18611	8.442E-05	453.58937781209386	47.156	0.7216	47.209	46.929	47.651	0.052574					64	26	3	0	0	0	0.32493	2	10672	10672;10720		19.987	10.223	1	1452100	+		38498	18065	22472	22473	46521;46522	46521					0.08206940128798124
RPDRKQVEAIF	11	Unmodified	_RPDRKQVEAIF_					0	0	0			REV__ENST00000494718.5_1_X:51643260-51645023:+|nuORF	REV__ENST00000494718.5_1_X:51643260-51645023:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.5894775390625	3	453.589487	1357.74663	0.80678	0.00036595	-0.73383	-0.00033286	0.072952	3.309E-05	453.5891178867941	47.221	0.69564	47.275	47.006	47.702	0.054371					66	25	4	0	0	0	0.39698	2	10723	10672;10723		11.631	11.631	1	1361700	+		38499	18065	22472	22473	46523;46524	46524					0.08206940128798124
RPDSRLGKTEL	11	Unmodified	_RPDSRLGKTEL_					0	0	0		nc|ENSG00000181555|Q9BYW2-3|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2;SETD2|p.P1822Qfs*16|1|0.27|ENSG00000181555|chr3:47084315-47084315|G/-|frameshift_variant;SETD2|p.K1863Sfs*2|1|0.27|ENSG00000181555|chr3:47084194-47084194|G/-|frameshift_variant;SETD2|p.D2004Ifs*2|1|0.14|ENSG00000181555|chr3:47083770-47083770|C/-|frameshift_variant;SETD2|p.P2288Ifs*22|1|0.23|ENSG00000181555|chr3:47056922-47056923|-/AT|frameshift_variant;SETD2|p.T2372Sfs*54|1|0.42|ENSG00000181555|chr3:47042678-47042685|TTATTTGT/-|frameshift_variant;SETD2|p.D2504*|1|0.21|ENSG00000181555|chr3:47017657-47017661|AAGTC/-|frameshift_variant;SETD2|p.K2545*|1|0.19|ENSG00000181555|chr3:47017155-47017156|-/A|frameshift_variant;ENSG00000181555|ENST00000409792|SETD2;SETD2|p.I1377Mfs*16|1|0.51|ENSG00000181555|chr3:47120448-47120505|ATTTTTTTCTAAGTTTTTTGAAAAATCTTTCTTTTCATTCACAGCTAAAGTGTCCTTA/-|frameshift_variant;SETD2|p.S1437Rfs*13|1|0.08|ENSG00000181555|chr3:47120318-47120328|GGGGCACTGAT/-|frameshift_variant	nc|ENSG00000181555|Q9BYW2-3|SETD2	nc|ENSG00000181555|Q9BYW2-3|SETD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.51885986328125	3	424.573726	1270.69935	-0.19288	-8.1891E-05	0.11051	4.692E-05	-0.082369	-3.4972E-05	424.57375747620915	23.814	0.51613	23.814	23.569	24.085	0					30	17	2	0	0	0	0.33085	1	3558	3558		8.2864	2.503	1	173730			38500	7240	22473	22474	46525	46525					0.07482660857795054
RPDTPPLYGY	10	Unmodified	_RPDTPPLYGY_					0	0	0			REV__ENST00000520568.1_1_8:89198619-89339435:-|nuORF	REV__ENST00000520568.1_1_8:89198619-89339435:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.7952880859375	2	589.795663	1177.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.423	1	14.357	13.857	14.857	-0.066068								0	0	0	0.37664	1	720	720		3.5965	0.31518	1		+		38501	16730	22474	22475	46526	46526					-0.004911758736170668
RPDVGRYLREL	11	Unmodified	_RPDVGRYLREL_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.59320068359375	3	458.59312	1372.75753	0.23658	0.0001085	-0.19294	-8.8479E-05	0.043648	2.0017E-05	458.59308368483846	48.491	1.0872	48.491	48.156	49.243	0					114	38	5	0	0	0	0.030099	3	11061	11061;11109;11163		58.996	35.274	1	5981700			38502	8341	22475	22476	46527;46528;46529	46527					0.08606342503094311
RPDVGRYLREL	11	Unmodified	_RPDVGRYLREL_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.5931091308594	3	458.59312	1372.75753	0.36342	0.00016666	-0.22073	-0.00010123	0.14268	6.5434E-05	458.59304935490604	48.425	1.0952	48.468	48.065	49.16	0.04332					112	40	4	0	0	0	0.010219	4	11096	11007;11054;11096;11149		69.209	37.664	1	6601500			38503	8341	22475	22476	46530;46531;46532;46533	46532					0.08606342503094311
RPDVRPPLGR	10	Unmodified	_RPDVRPPLGR_					0	0	0		ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.28466796875	2	581.843813	1161.67307	0.027	1.571E-05	0.89346	0.00051985	0.92046	0.00053556	581.8443865835188	14.724	0.22922	14.619	14.54	14.77	-0.10466					12	7	2	0	0	0	0.32132	1	805	805		1.4819	0	1	39497			38504	7155	22476	22477	46534	46534					0.09870436476990108
RPDYRNITF	9	Unmodified	_RPDYRNITF_					0	0	0		nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	nc|ENSG00000116984|Q99707-2|MTR	nc|ENSG00000116984|Q99707-2|MTR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.3069458007812	2	591.306729	1180.59891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.852	1	41.852	41.352	42.352	0								0	0	0	0.042243	1	9058	9058		63.227	34.146	1				38505	2766	22477	22478	46535	46535					0.015830485947844863
RPDYRNITF	9	Unmodified	_RPDYRNITF_					0	0	0		nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	nc|ENSG00000116984|Q99707-2|MTR	nc|ENSG00000116984|Q99707-2|MTR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8091430664062	2	591.306729	1180.59891	0.34902	0.00020638	0.3061	0.000181	0.65512	0.00038738	591.3068405650791	41.608	0.35881	41.608	41.382	41.741	0					22	14	2	0	0	0	0.097101	1	8997	8997		57.249	33.459	1	2061500			38506	2766	22477	22478	46536	46536					0.015830485947844863
RPDYRNITF	9	Unmodified	_RPDYRNITF_					0	0	0		nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	nc|ENSG00000116984|Q99707-2|MTR	nc|ENSG00000116984|Q99707-2|MTR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.3065795898438	2	591.306729	1180.59891	0.29051	0.00017178	0.20713	0.00012248	0.49765	0.00029426	591.306691125308	41.224	0.61023	41.314	41.029	41.639	0.090252					49	22	4	0	0	0	0.0091837	2	8844	8844;8893		80.676	38.836	1	1268200			38507	2766	22477	22478	46537;46538	46537					0.015830485947844863
RPDYRNITF	9	Unmodified	_RPDYRNITF_					0	0	0		nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	nc|ENSG00000116984|Q99707-2|MTR	nc|ENSG00000116984|Q99707-2|MTR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.3073120117188	2	591.306729	1180.59891	0.30192	0.00017853	0.05932	3.5076E-05	0.36124	0.00021361	591.3067195735816	41.14	0.54518	41.237	40.96	41.505	0.096626					48	19	3	0	0	0	0.0091837	2	8891	8792;8891		80.676	46.274	1	1084900			38508	2766	22477	22478	46539;46540	46540					0.015830485947844863
RPEARKRLL	9	Unmodified	_RPEARKRLL_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.3134765625	2	569.862006	1137.70946	0.14391	8.201E-05	-0.67104	-0.0003824	-0.52713	-0.00030039	569.8614678676518	27.144	0.42683	27.144	26.953	27.38	0					22	14	2	0	0	0	0.26188	1	4582	4582		1.6526	0	1	57586			38509	4229	22478	22479	46541	46541					0.14611313373688972
RPEDQRSSF	9	Unmodified	_RPEDQRSSF_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5;ENST00000352460.7_1_11:18303495-18317646:-|nuORF	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.288330078125	2	561.270344	1120.52613	0.26649	0.00014957	-0.072388	-4.0629E-05	0.1941	0.00010894	561.2701854682995	17.11	0.37125	17.11	16.925	17.296	0					18	12	2	0	0	0	0.30064	1	1533	1533		8.7454	0	1	38509			38510	2328	22479	22480	46542	46542					-0.029307051986279475
RPEEGRPVV	9	Unmodified	_RPEEGRPVV_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;ENST00000482752.1_1_3:47918864-47969739:-|nuORF;ENST00000497735.1_1_3:47918864-47932940:-|nuORF;nc|ENSG00000047849|P27816-3|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3400268554688	2	519.788173	1037.56179	0.15754	8.1889E-05	-1.5852	-0.00082396	-1.4276	-0.00074207	519.7880421922864	19.061	0.91377	19.003	18.628	19.542	-0.058174					89	31	4	0	0	0	0.1645	1	2167	2167		40.239	19.368	1	490360			38511	638	22480	22481	46543	46543					0.04451377049053917
RPEEGRPVV	9	Unmodified	_RPEEGRPVV_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;ENST00000482752.1_1_3:47918864-47969739:-|nuORF;ENST00000497735.1_1_3:47918864-47932940:-|nuORF;nc|ENSG00000047849|P27816-3|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	519.788173	1037.56179	0.2053	0.00010671	-1.579	-0.00082072	-1.3737	-0.00071401	519.7880306069292	19.006	0.9264	19.006	18.535	19.461	0	-0.0096833	-5.6689E-05	NaN	40.239	90	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	460570			38512	638	22480	22481							0.04451377049053917
RPEEGRPVV	9	Unmodified	_RPEEGRPVV_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;ENST00000482752.1_1_3:47918864-47969739:-|nuORF;ENST00000497735.1_1_3:47918864-47932940:-|nuORF;nc|ENSG00000047849|P27816-3|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	519.788173	1037.56179	0.19832	0.00010309	-1.4235	-0.00073994	-1.2252	-0.00063686	519.7880775295596	19.155	0.89915	19.038	18.679	19.578	-0.11629	0.022397	0.00010487	NaN	40.239	87	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	560450			38513	638	22480	22481							0.04451377049053917
RPEELPSF	8	Unmodified	_RPEELPSF_					0	0	0			REV__nc|ENSG00000056586|Q9HBD1-3|RC3H2	REV__nc|ENSG00000056586|Q9HBD1-3|RC3H2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7381896972656	2	487.750724	973.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.72	1	25.697	25.197	26.197	-0.022238								0	0	0	0.36486	1	4136	4136		7.9102	0.62092	1		+		38514	22887	22481	22482	46544	46544					-0.0009080548218207696
RPEHSIPRRQR	11	Unmodified	_RPEHSIPRRQR_					0	0	0		ENST00000480273.5_1_20:62319266-62327135:+|nuORF;nc|ENSG00000258366|Q9NZ71-9|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-5|RTEL1;ENST00000496281.1_1_20:62323608-62327208:+|nuORF	ENST00000480273.5_1_20:62319266-62327135:+|nuORF	ENST00000480273.5_1_20:62319266-62327135:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.74786376953125	3	477.939514	1430.79671	0.27828	0.000133	0.65187	0.00031156	0.93016	0.00044456	477.93985503978723	21.061	0.74622	21.061	20.798	21.545	0					83	25	4	0	0	0	0.33321	1	2821	2821		1.9275	0.14508	1	404620			38515	8639	22482	22483	46545	46545					0.09854487577308646
RPELPAERNQL	11	Unmodified	_RPELPAERNQL_					0	0	0		nc|ENSG00000189221|P21397-2|MAOA;ENSG00000189221|ENST00000338702|MAOA	nc|ENSG00000189221|P21397-2|MAOA	nc|ENSG00000189221|P21397-2|MAOA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7889404296875	3	441.577359	1321.71025	0.4975	0.00021968	0.78802	0.00034797	1.2855	0.00056765	441.57847080885074	33.919	1.0821	33.919	33.336	34.418	0					95	38	4	0	0	0	0.2938	1	6619	6619		28.46	21.83	1	1086200			38516	7808	22483	22484	46546	46546					0.062260632320885634
RPELPAERNQL	11	Unmodified	_RPELPAERNQL_					0	0	0		nc|ENSG00000189221|P21397-2|MAOA;ENSG00000189221|ENST00000338702|MAOA	nc|ENSG00000189221|P21397-2|MAOA	nc|ENSG00000189221|P21397-2|MAOA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7889099121094	3	441.577359	1321.71025	0.60939	0.00026909	1.2772	0.00056398	1.8866	0.00083307	441.57859462918725	33.711	1.1329	33.777	33.102	34.235	0.06636					99	40	4	0	0	0	0.26515	1	6569	6569		41.567	31.039	1	935260			38517	7808	22483	22484	46547	46547					0.062260632320885634
RPELPAERNQL	11	Unmodified	_RPELPAERNQL_					0	0	0		nc|ENSG00000189221|P21397-2|MAOA;ENSG00000189221|ENST00000338702|MAOA	nc|ENSG00000189221|P21397-2|MAOA	nc|ENSG00000189221|P21397-2|MAOA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7889404296875	3	441.577359	1321.71025	0.035838	1.5825E-05	1.4194	0.00062676	1.4552	0.00064259	441.5786138735337	33.751	1.0513	33.817	33.187	34.239	0.066704					98	37	4	0	0	0	0.26603	1	6566	6566		42.466	30.948	1	930270			38518	7808	22483	22484	46548	46548					0.062260632320885634
RPELVRPAL	9	Unmodified	_RPELVRPAL_					0	0	0		ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF;ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF	ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000196139|ENST00000380554|AKR1C3	ENSG00000187134|ENST00000380872|AKR1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8248291015625	2	525.824558	1049.63456	0.89374	0.00046995	0.40961	0.00021538	1.3034	0.00068533	525.824956123757	37.41	2.0289	37.41	36.93	38.958	0					228	72	5	0	0	0	0.0013683	7	7816	7637;7685;7725;7770;7816;7866;7919		118.07	65.8	1	27935000			38519	7666;7826	22484	22485	46549;46550;46551;46552;46553;46554;46555	46553					0.11173130842439605
RPELVRPAL	9	Unmodified	_RPELVRPAL_					0	0	0		ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF;ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF	ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000196139|ENST00000380554|AKR1C3	ENSG00000187134|ENST00000380872|AKR1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8255004882812	2	525.824558	1049.63456	0.52303	0.00027502	0.7968	0.00041898	1.3198	0.000694	525.8251777591848	37.34	1.9885	37.428	36.95	38.939	0.087406					215	72	5	0	0	0	0.0028626	6	7592	7592;7637;7688;7730;7772;7824		103.35	59.495	1	27052000			38520	7666;7826	22484	22485	46556;46557;46558;46559;46560;46561	46556					0.11173130842439605
RPELVRPAL	9	Unmodified	_RPELVRPAL_					0	0	0		ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF;ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF	ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000196139|ENST00000380554|AKR1C3	ENSG00000187134|ENST00000380872|AKR1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8256225585938	2	525.824558	1049.63456	0.59397	0.00031233	0.76477	0.00040213	1.3587	0.00071446	525.825124477029	37.288	2.2531	37.381	36.924	39.178	0.093014					233	81	5	0	0	0	0.0016361	5	7646	7598;7646;7688;7735;7779		114.65	53.421	1	26739000			38521	7666;7826	22484	22485	46562;46563;46564;46565;46566	46563					0.11173130842439605
RPELVWWKCK	10	Unmodified	_RPELVWWKCK_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.77679443359375	3	448.913025	1343.71725	0.13726	6.1618E-05	0.62809	0.00028196	0.76535	0.00034358	448.91320860133413	33.371	0.57771	33.371	33.039	33.617	0					43	20	3	0	0	0	0.31994	1	6490	6490		3.0723	0	1	208190			38522	3725	22485	22486	46567	46567					0.0591370457893845
RPENRSFYL	9	Unmodified	_RPENRSFYL_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89962405-89970614:+|nuORF;ENST00000566158.5_1_16:89962405-89965058:+|nuORF;ENST00000563636.5_1_16:89961526-89967207:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.3070678710938	2	591.306729	1180.59891	0.19893	0.00011763	0.86526	0.00051164	1.0642	0.00062926	591.3068295975798	34.201	0.83514	34.201	33.916	34.751	0					75	29	3	0	0	0	0.026579	3	6701	6701;6747;6793		61.602	27.2	1	790670			38523	4351	22486	22487	46568;46569;46570	46568					0.01583048594829961
RPENRSFYL	9	Unmodified	_RPENRSFYL_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89962405-89970614:+|nuORF;ENST00000566158.5_1_16:89962405-89965058:+|nuORF;ENST00000563636.5_1_16:89961526-89967207:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.3070678710938	2	591.306729	1180.59891	0.36489	0.00021576	0.77078	0.00045576	1.1357	0.00067153	591.3068385119158	34.065	0.86178	34.131	33.814	34.676	0.06636					78	30	3	0	0	0	0.026579	4	6634	6634;6683;6733;6773		61.602	32.258	1	675280			38524	4351	22486	22487	46571;46572;46573;46574	46571					0.01583048594829961
RPENRSFYL	9	Unmodified	_RPENRSFYL_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89962405-89970614:+|nuORF;ENST00000566158.5_1_16:89962405-89965058:+|nuORF;ENST00000563636.5_1_16:89961526-89967207:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.3074951171875	2	591.306729	1180.59891	0.19785	0.00011699	0.72456	0.00042843	0.9224	0.00054542	591.3068490083899	34.054	0.91724	34.121	33.852	34.769	0.0667					84	32	3	0	0	0	0.015924	2	6647	6647;6694		70.332	31.072	1	776960			38525	4351	22486	22487	46575;46576	46575					0.01583048594829961
RPEPVRASK	9	Unmodified	_RPEPVRASK_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3400268554688	2	520.30399	1038.59343	0.18646	9.7017E-05	-0.47228	-0.00024573	-0.28582	-0.00014871	520.3036970878916	19.072	1.1131	19.014	18.788	19.901	-0.058174					88	38	4	0	0	0	0.24993	1	2167	2167		13.042	0	1	509840			38526	975	22487	22488	46577	46577					0.0756736980297319
RPEPVRASK	9	Unmodified	_RPEPVRASK_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	520.30399	1038.59343	0.21572	0.00011224	-0.61632	-0.00032068	-0.40061	-0.00020844	520.3036393014407	18.979	0.9448	18.979	18.71	19.655	0	-0.026631	-5.2361E-06	NaN	13.042	86	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	545290			38527	975	22487	22488							0.0756736980297319
RPEPVRASK	9	Unmodified	_RPEPVRASK_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	520.30399	1038.59343	0.21087	0.00010971	-0.69044	-0.00035924	-0.47958	-0.00024953	520.3035769520322	19.14	0.9374	19.023	18.761	19.699	-0.117	0.018135	-8.2364E-05	NaN	13.042	87	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	532350			38528	975	22487	22488							0.0756736980297319
RPEQPQLR	8	Unmodified	_RPEQPQLR_					0	0	0			REV__ENST00000459834.5_1_7:56079457-56101834:-|nuORF	REV__ENST00000459834.5_1_7:56079457-56101834:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7985229492188	2	512.28834	1022.56213	0.27616	0.00014147	-0.53933	-0.00027629	-0.26318	-0.00013482	512.2880400348427	24.509	0.65244	24.509	24.22	24.872	0					30	21	2	0	0	0	0.44389	1	3755	3755		7.9102	2.1783	1	71627	+		38529	21194	22488	22489	46578	46578					0.0517479676889252
RPERVMSTEL	10	Unmodified	_RPERVMSTEL_					0	0	0			REV__ENST00000461347.5_1_2:232347984-232348125:-|nuORF	REV__ENST00000461347.5_1_2:232347984-232348125:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.535400390625	3	406.548412	1216.62341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.805	1	18.688	18.188	19.188	-0.11739								0	0	0	0.37044	1	2045	2045		3.3196	0.68841	1		+		38530	21219	22489	22490	46579	46579					0.023759406860108356
RPESRIPS	8	Unmodified	_RPESRIPS_					0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2200622558594	2	471.261791	940.509028	0.0040977	1.9311E-06	-0.47005	-0.00022152	-0.46595	-0.00021959	471.2615274084957	19.158	0.9374	19.041	18.762	19.699	-0.11615					68	32	3	0	0	0	0.32537	1	2139	2139		24.021	3.5669	1	408320	+		38531	14997	22490	22491	46580	46580					0.03639418986244891
RPEVVRWR	8	Unmodified	_RPEVVRWR_					0	0	0			REV__ENST00000254657.7_1_2:239197002-239197146:-|nuORF	REV__ENST00000254657.7_1_2:239197002-239197146:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.8406982421875	2	549.319974	1096.6254	0.38045	0.00020899	0.44869	0.00024647	0.82913	0.00045546	549.3198504453065	17.066	0.37125	17.066	16.925	17.296	0					17	12	2	0	0	0	0.46022	1	1542	1542		2.3027	0.65011	1	40265	+		38532	19545	22491	22492	46581	46581					0.08094782276793921
RPFCRTKKPRF	11	Unmodified	_RPFCRTKKPRF_					0	0	0			REV__LRG1|p.N306Rfs*29|1|0.31|ENSG00000171236|chr19:4538064-4538067|AGGT/-|frameshift_variant	REV__LRG1|p.N306Rfs*29|1|0.31|ENSG00000171236|chr19:4538064-4538067|AGGT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.80572509765625	3	479.274957	1434.80304	0.43907	0.00021044	1.196	0.00057323	1.6351	0.00078367	479.60983328796914	26.693	0.39122	26.671	26.502	26.893	-0.022238					25	13	3	0	0	0	0.33303	1	4481	4481		2.4348	1.22	1	113210	+		38533	22837	22492	22493	46582	46582					0.10303289484454581
RPFCRTKKPRF	11	Unmodified	_RPFCRTKKPRF_					0	0	0			REV__LRG1|p.N306Rfs*29|1|0.31|ENSG00000171236|chr19:4538064-4538067|AGGT/-|frameshift_variant	REV__LRG1|p.N306Rfs*29|1|0.31|ENSG00000171236|chr19:4538064-4538067|AGGT/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	479.274957	1434.80304	0.081514	3.9068E-05	1.1842	0.00056754	1.2657	0.0006066	479.27531238104615	26.66	0.37209	26.66	26.469	26.841	0	0.015431	-1.4619E-05	NaN	2.4348	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143740	+		38534	22837	22492	22493							0.10303289484454581
RPFCRTKKPRF	11	Unmodified	_RPFCRTKKPRF_					0	0	0			REV__LRG1|p.N306Rfs*29|1|0.31|ENSG00000171236|chr19:4538064-4538067|AGGT/-|frameshift_variant	REV__LRG1|p.N306Rfs*29|1|0.31|ENSG00000171236|chr19:4538064-4538067|AGGT/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	479.274957	1434.80304	0.18226	8.7353E-05	1.2063	0.00057817	1.3886	0.00066552	479.6100372280597	26.641	0.62157	26.603	26.316	26.938	-0.038671	-0.041894	1.7273E-05	NaN	2.4348	30	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93692	+		38535	22837	22492	22493							0.10303289484454581
RPFEDQTSL	9	Unmodified	_RPFEDQTSL_					0	0	0		ENST00000424137.2_1_20:34340744-34341539:+|nuORF;ENSG00000197498|ENST00000441448|RPF2	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	ENST00000424137.2_1_20:34340744-34341539:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.769775390625	2	546.769645	1091.52474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.355	1	38.355	37.855	38.855	0								0	0	0	0.093943	1	7989	7989		47.732	14.287	1				38536	7970	22493	22494	46583	46583					-0.017363392873676275
RPFERIMQL	9	Oxidation (M)	_RPFERIM(Oxidation (M))QL_		RPFERIM(1)QL		RPFERIM(42)QL	0	0	1		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3263549804688	2	603.326608	1204.63866	0.37262	0.00022481	-0.12467	-7.5217E-05	0.24795	0.0001496	603.3263946123499	39.056	0.7884	39.149	38.76	39.548	0.09267					76	28	4	0	0	0	0.07848	1	8166	8166		42.312	16.044	1	1443400			38537	2434	22494	22495	46584	46584		299			0.044528522738573884
RPFERRLYVL	10	Unmodified	_RPFERRLYVL_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.Q1078Afs*25|1|0.3|ENSG00000077235|chr16:27489664-27489665|-/T|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2667236328125	3	450.266456	1347.77754	0.058809	2.648E-05	-0.15802	-7.1152E-05	-0.099213	-4.4672E-05	450.26640009774724	42.698	1.1936	42.698	42.383	43.576	0					131	43	4	0	0	0	0.34535	1	9447	9447		13.519	6.8952	1	4776200			38538	1082	22495	22496	46585	46585					0.11756138233704405
RPFERRLYVL	10	Unmodified	_RPFERRLYVL_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.Q1078Afs*25|1|0.3|ENSG00000077235|chr16:27489664-27489665|-/T|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2663879394531	3	450.266456	1347.77754	0.1186	5.3401E-05	-0.21542	-9.6998E-05	-0.096827	-4.3598E-05	450.2663828113995	42.386	1.1205	42.471	42.121	43.242	0.085201					139	40	5	0	0	0	0.041185	1	9221	9221		60.943	25.864	1	5631300			38539	1082	22495	22496	46586	46586					0.11756138233704405
RPFERRLYVL	10	Unmodified	_RPFERRLYVL_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;GTF3C1|p.Q1078Afs*25|1|0.3|ENSG00000077235|chr16:27489664-27489665|-/T|frameshift_variant	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2664794921875	3	450.266456	1347.77754	0.21134	9.516E-05	-0.27761	-0.000125	-0.06627	-2.9839E-05	450.26632905877926	42.297	1.2387	42.388	42.037	43.276	0.091362					144	44	5	0	0	0	0.057019	1	9183	9183		57.477	31.479	1	4855500			38540	1082	22495	22496	46587	46587					0.11756138233704405
RPFERTITM	9	Oxidation (M)	_RPFERTITM(Oxidation (M))_		RPFERTITM(1)		RPFERTITM(120)	0	0	1		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.8037109375	2	583.802965	1165.59138	0.19395	0.00011323	-0.34339	-0.00020047	-0.14944	-8.7245E-05	583.8034085381074	26.393	1.9937	26.393	26.042	28.036	0					205	69	6	0	0	0	0.0011116	5	4368	4278;4323;4368;4411;4457		121.35	79.39	1	15426000			38541	4062	22496	22497	46588;46589;46590;46591;46592	46590		515			0.015205730028583275
RPFERTITM	9	Oxidation (M)	_RPFERTITM(Oxidation (M))_		RPFERTITM(1)		RPFERTITM(110)	0	0	1		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.8037109375	2	583.802965	1165.59138	0.15978	9.3281E-05	-0.26944	-0.0001573	-0.10966	-6.4017E-05	583.8034053834031	26.403	2.1483	26.364	26.01	28.158	-0.038671					226	75	6	0	0	0	0.0019382	5	4372	4283;4327;4372;4414;4460		110.79	75.861	1	15948000			38542	4062	22496	22497	46593;46594;46595;46596;46597	46595		515			0.015205730028583275
RPFERTITM	9	Oxidation (M)	_RPFERTITM(Oxidation (M))_		RPFERTITM(1)		RPFERTITM(120)	0	0	1		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.8035278320312	2	583.802965	1165.59138	0.43165	0.000252	-0.50625	-0.00029555	-0.074594	-4.3548E-05	583.8032951070986	26.446	2.0306	26.424	26.105	28.135	-0.022236					215	71	6	0	0	0	0.0011116	3	4338	4338;4382;4426		121.35	79.39	1	17472000			38543	4062	22496	22497	46598;46599;46600	46598		515			0.015205730028583275
RPFGHQIALFK	11	Unmodified	_RPFGHQIALFK_					0	0	0			REV__ENST00000306085.10_3_7:100728844-100730655:+|nuORF	REV__ENST00000306085.10_3_7:100728844-100730655:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.75048828125	3	438.587418	1312.74043	0.1195	5.2413E-05	-1.0968	-0.00048103	-0.97726	-0.00042862	438.58625766659645	37.401	0.24822	37.488	37.442	37.69	0.08741					12	8	2	0	0	0	0.33094	1	7724	7724		4.7159	0.83959	1	119130	+		38544	19858	22497	22498	46601	46601					0.09656466687920329
RPFGISAL	8	Unmodified	_RPFGISAL_					0	0	0		nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8;ENST00000484488.5_1_20:60711915-60714832:-|nuORF;nc|ENSG00000101182|O14818-2|PSMA7;ENSG00000101182|ENST00000370873|PSMA7	nc|ENSG00000154611|Q8TAA3-2|PSMA8	nc|ENSG00000154611|Q8TAA3-2|PSMA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.753173828125	2	430.75307	859.491587	0.25575	0.00011017	0.2228	9.5973E-05	0.47855	0.00020614	430.7530824217972	50.925	0.64816	50.925	50.623	51.271	0					59	23	3	0	0	0	0.071344	1	11846	11846		68.081	23.674	1	1066600			38545	5139	22498	22499	46602	46602					0.05622123451234984
RPFGISAL	8	Unmodified	_RPFGISAL_					0	0	0		nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8;ENST00000484488.5_1_20:60711915-60714832:-|nuORF;nc|ENSG00000101182|O14818-2|PSMA7;ENSG00000101182|ENST00000370873|PSMA7	nc|ENSG00000154611|Q8TAA3-2|PSMA8	nc|ENSG00000154611|Q8TAA3-2|PSMA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.7531433105469	2	430.75307	859.491587	0.1676	7.2192E-05	0.38769	0.000167	0.55529	0.00023919	430.7530610128213	50.919	0.77165	50.965	50.63	51.401	0.046577					70	28	4	0	0	0	0.095164	1	11838	11838		61.357	23.206	1	943870			38546	5139	22498	22499	46603	46603					0.05622123451234984
RPFGISAL	8	Unmodified	_RPFGISAL_					0	0	0		nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8;ENST00000484488.5_1_20:60711915-60714832:-|nuORF;nc|ENSG00000101182|O14818-2|PSMA7;ENSG00000101182|ENST00000370873|PSMA7	nc|ENSG00000154611|Q8TAA3-2|PSMA8	nc|ENSG00000154611|Q8TAA3-2|PSMA8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	430.75307	859.491587	0.19787	8.5234E-05	0.3261	0.00014047	0.52397	0.0002257	430.7531351251616	51.003	0.70013	51.012	50.621	51.321	0.0095634	0.044607	9.4938E-06	NaN	68.081	65	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	951270			38547	5139	22498	22499							0.05622123451234984
RPFGSISRIYL	11	Unmodified	_RPFGSISRIYL_					0	0	0		ENST00000590158.1_1_19:10225792-10226817:-|nuORF;ENSG00000130811|ENST00000253108|EIF3G	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.9188232421875	3	436.918945	1307.73501	0.17866	7.8059E-05	-0.36138	-0.00015789	-0.18272	-7.9835E-05	436.9187697828549	54.183	0.91826	54.167	53.787	54.706	-0.015923					94	32	4	0	0	0	0.021361	2	12889	12839;12889		61.523	40.281	1	2689200			38548	3518	22499	22500	46604;46605	46605					0.09344743105475573
RPFGSISRIYL	11	Unmodified	_RPFGSISRIYL_					0	0	0		ENST00000590158.1_1_19:10225792-10226817:-|nuORF;ENSG00000130811|ENST00000253108|EIF3G	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	436.918945	1307.73501	0.23435	0.00010239	-0.48081	-0.00021007	-0.24646	-0.00010768	436.9187202385734	53.935	0.84002	53.935	53.595	54.435	0	-0.068183	-0.00012534	NaN	61.523	88	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2200000			38549	3518	22499	22500							0.09344743105475573
RPFGSISRIYL	11	Unmodified	_RPFGSISRIYL_					0	0	0		ENST00000590158.1_1_19:10225792-10226817:-|nuORF;ENSG00000130811|ENST00000253108|EIF3G	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	436.918945	1307.73501	0.012651	5.5276E-06	-0.28808	-0.00012587	-0.27543	-0.00012034	436.91881696457335	53.852	0.86557	53.908	53.611	54.476	0.056259	-0.095186	0.00012728	NaN	61.523	96	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2606200			38550	3518	22499	22500							0.09344743105475573
RPFHGISTV	9	Unmodified	_RPFHGISTV_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.29034423828125	2	507.279983	1012.54541	-0.0037067	-1.8803E-06	0.046742	2.3711E-05	0.043035	2.1831E-05	507.280110280819	30.092	0.58229	30.119	29.812	30.394	0.027157					25	19	2	0	0	0	0.23784	1	5443	5443		19.257	10.664	1	121660			38551	4030	22500	22501	46606	46606					0.03964295882951774
RPFHGISTV	9	Unmodified	_RPFHGISTV_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.279983	1012.54541	0.42414	0.00021516	-0.34393	-0.00017447	0.080204	4.0686E-05	507.2799367550435	30.09	0.78679	30.09	29.801	30.587	0	-0.0032733	-0.00014388	NaN	29.082	33	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89602			38552	4030	22500	22501							0.03964295882951774
RPFHGISTVSL	11	Unmodified	_RPFHGISTVSL_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.338623046875	2	607.33803	1212.66151	0.52006	0.00031585	0.98985	0.00060118	1.5099	0.00091703	607.3385778763404	45.104	0.4061	45.104	44.909	45.315	0					30	14	3	0	0	0	0.041021	1	10079	10079		51.488	35.339	1	380840			38553	4030	22501	22502	46607	46607					0.063681946629913
RPFHGISTVSL	11	Unmodified	_RPFHGISTVSL_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	607.33803	1212.66151	0.52156	0.00031676	0.67442	0.0004096	1.196	0.00072636	607.3384492161031	44.905	0.46991	44.974	44.791	45.261	0.068573	-0.039123	-0.0001497	NaN	51.488	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	526810			38554	4030	22501	22502							0.063681946629913
RPFHGISTVSL	11	Unmodified	_RPFHGISTVSL_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	607.33803	1212.66151	0.48508	0.00029461	0.81022	0.00049208	1.2953	0.00078669	607.3384871972831	44.885	0.46039	44.96	44.749	45.209	0.07505	-0.052306	1.5257E-05	NaN	51.488	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453800			38555	4030	22501	22502							0.063681946629913
RPFISEGTTL	10	Unmodified	_RPFISEGTTL_					0	0	0		ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	ENSG00000106799|ENST00000374994|TGFBR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8525390625	2	560.803488	1119.59242	0.59679	0.00033468	-1.4525	-0.00081454	-0.85566	-0.00047986	560.8031287155717	47.157	0.39149	47.157	46.961	47.352	0					36	13	4	0	0	0	0.23628	1	10667	10667		35.612	11.592	1	586830			38556	2102	22502	22503	46608	46608					0.03741110643431966
RPFLLQPHRLR	11	Unmodified	_RPFLLQPHRLR_					0	0	0			REV__ENST00000310653.10_2_11:73471884-73472109:-|nuORF	REV__ENST00000310653.10_2_11:73471884-73472109:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.8155822753906	3	478.293117	1431.85752	0.043368	2.0743E-05	0.50169	0.00023995	0.54505	0.0002607	478.29314973034565	93.635	0.38493	93.635	93.542	93.927	0					48	30	2	0	0	0	0.33296	1	25026	25026		2.6312	2.1767	1	157040	+		38557	19895	22503	22504	46609	46609					0.15886624627523815
RPFLRPNII	9	Unmodified	_RPFLRPNII_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.S1823Wfs*15|1|0.26|ENSG00000124201|chr20:49247550-49247556|AGGCCAG/-|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3480834960938	2	563.3482	1124.68185	0.09191	5.1777E-05	-0.31122	-0.00017533	-0.21931	-0.00012355	563.3479283462004	46.424	0.85587	46.424	46.168	47.024	0					81	30	4	0	0	0	0.027237	3	10495	10447;10495;10575		61.357	29.052	1	2263300			38558	3140	22504	22505	46610;46611;46612	46611					0.12449410113458725
RPFLRPNII	9	Unmodified	_RPFLRPNII_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.S1823Wfs*15|1|0.26|ENSG00000124201|chr20:49247550-49247556|AGGCCAG/-|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3479614257812	2	563.3482	1124.68185	0.36347	0.00020476	-0.639	-0.00035998	-0.27553	-0.00015522	563.3477655163077	46.32	0.80931	46.38	46.098	46.908	0.059834					87	29	4	0	0	0	0.07432	3	10390	10390;10506;10564		43.858	16.975	1	2627300			38559	3140	22504	22505	46613;46614;46615	46613					0.12449410113458725
RPFLRPNII	9	Unmodified	_RPFLRPNII_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.S1823Wfs*15|1|0.26|ENSG00000124201|chr20:49247550-49247556|AGGCCAG/-|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.3479614257812	2	563.3482	1124.68185	0.12156	6.848E-05	-0.34741	-0.00019571	-0.22585	-0.00012723	563.3479451351958	46.383	1.0601	46.438	46.136	47.196	0.054371					87	37	4	0	0	0	0.01083	3	10445	10400;10445;10502		78.149	42.022	1	2644100			38560	3140	22504	22505	46616;46617;46618	46617					0.12449410113458725
RPFLSRESL	9	Unmodified	_RPFLSRESL_					0	0	0		ENSG00000169021|ENST00000304863|UQCRFS1;nc|ENSG00000226085|P0C7P4|UQCRFS1P1	ENSG00000169021|ENST00000304863|UQCRFS1	ENSG00000169021|ENST00000304863|UQCRFS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8111572265625	2	552.811648	1103.60874	0.72516	0.00040088	-0.9503	-0.00052534	-0.22514	-0.00012446	552.8110706989592	37.198	0.54721	37.198	36.93	37.477	0					34	19	2	0	0	0	0.24429	1	7624	7624		18.373	4.467	1	513030			38561	6322	22505	22506	46619	46619					0.061082366001983246
RPFLSRESL	9	Unmodified	_RPFLSRESL_					0	0	0		ENSG00000169021|ENST00000304863|UQCRFS1;nc|ENSG00000226085|P0C7P4|UQCRFS1P1	ENSG00000169021|ENST00000304863|UQCRFS1	ENSG00000169021|ENST00000304863|UQCRFS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.8116455078125	2	552.811648	1103.60874	0.46134	0.00025503	-0.89949	-0.00049725	-0.43815	-0.00024221	552.8111863155164	36.98	0.60093	37.068	36.841	37.442	0.08741					48	21	3	0	0	0	0.25112	1	7617	7617		16.149	3.1066	1	432500			38562	6322	22505	22506	46620	46620					0.061082366001983246
RPFLSRESL	9	Unmodified	_RPFLSRESL_					0	0	0		ENSG00000169021|ENST00000304863|UQCRFS1;nc|ENSG00000226085|P0C7P4|UQCRFS1P1	ENSG00000169021|ENST00000304863|UQCRFS1	ENSG00000169021|ENST00000304863|UQCRFS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.8115234375	2	552.811648	1103.60874	0.55602	0.00030737	-0.73532	-0.0004065	-0.17931	-9.9122E-05	552.811153558173	37.054	0.49868	37.147	36.924	37.423	0.093018					31	17	2	0	0	0	0.24924	1	7585	7585		14.405	2.1647	1	476160			38563	6322	22505	22506	46621	46621					0.061082366001983246
RPFNARLAQVL	11	Unmodified	_RPFNARLAQVL_					0	0	0		ENSG00000182022|ENST00000435907|CHST15	ENSG00000182022|ENST00000435907|CHST15	ENSG00000182022|ENST00000435907|CHST15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	643.3839111328125	2	642.880396	1283.74624	0.85748	0.00055125	0.36937	0.00023746	1.2268	0.00078872	642.8801159257947	47.919	0.32914	47.967	47.772	48.101	0.04752					17	11	3	0	0	0	0.2973	1	10941	10941		26.268	14.027	1	781160			38564	7265	22506	22507	46622	46622					0.11571565199596989
RPFNARLAQVL	11	Unmodified	_RPFNARLAQVL_					0	0	0		ENSG00000182022|ENST00000435907|CHST15	ENSG00000182022|ENST00000435907|CHST15	ENSG00000182022|ENST00000435907|CHST15	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	642.880396	1283.74624	0.66127	0.00042512	-0.13101	-8.4221E-05	0.53027	0.0003409	642.8801446636675	47.944	0.55996	47.944	47.771	48.331	0	-0.01155	-0.00017025	NaN	38.176	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1609700			38565	7265	22506	22507							0.11571565199596989
RPFPGLVI	8	Unmodified	_RPFPGLVI_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7791748046875	2	449.779088	897.543623	0.11426	5.1391E-05	0.051943	2.3363E-05	0.1662	7.4753E-05	449.7790337430716	61.138	1.2043	61.138	60.88	62.084	0					81	44	2	0	0	0	0.17761	3	14974	14974;15021;15070		46.921	12.734	1	3109800			38566	8667	22507	22508	46623;46624;46625	46623					0.09075286864992904
RPFPGLVI	8	Unmodified	_RPFPGLVI_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.7790832519531	2	449.779088	897.543623	0.046085	2.0728E-05	0.13554	6.0963E-05	0.18163	8.1692E-05	449.77903229648905	61.062	1.2243	61.159	60.779	62.004	0.096985					105	44	3	0	0	0	0.23581	1	15004	15004		38.151	3.9638	1	3564800			38567	8667	22507	22508	46626	46626					0.09075286864992904
RPFPGLVI	8	Unmodified	_RPFPGLVI_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.7790222167969	2	449.779088	897.543623	0.10988	4.9423E-05	0.09451	4.2509E-05	0.20439	9.1931E-05	449.77905803258443	61.16	1.2009	61.151	60.838	62.039	-0.0094566					104	43	3	0	0	0	0.17761	3	15024	15024;15076;15127		46.921	12.734	1	3854200			38568	8667	22507	22508	46627;46628;46629	46627					0.09075286864992904
RPFPPLQAE	9	Unmodified	_RPFPPLQAE_					0	0	0			REV__ENST00000591881.5_1_19:5950841-5951586:-|nuORF	REV__ENST00000591881.5_1_19:5950841-5951586:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3062744140625	2	527.787641	1053.56073	0.55175	0.00029121	-0.43581	-0.00023001	0.11595	6.1195E-05	527.7872877500178	21.413	0.42599	21.413	21.228	21.654	0					23	14	2	0	0	0	0.26031	1	2840	2840		3.5965	0	1	53185	+		38569	13495	22508	22509	46630	46630					0.03609162680118061
RPFRKHGVVPL	11	Unmodified	_RPFRKHGVVPL_					0	0	0		ENSG00000122026|ENST00000311549|RPL21;ENST00000493466.1_1_4:37823021-37823243:+|nuORF;ENST00000422509.1_1_9:37490797-37490851:-|nuORF;ENST00000473558.5_1_13:27827913-27828439:+|nuORF	ENSG00000122026|ENST00000311549|RPL21	ENSG00000122026|ENST00000311549|RPL21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.9347229003906	3	435.934929	1304.78296	-0.26628	-0.00011608	-0.16475	-7.1819E-05	-0.43103	-0.0001879	435.9347798886197	27.498	1.1034	27.476	27.1	28.204	-0.021412					99	38	3	0	0	0	0.40701	1	4684	4684		10.315	2.8382	1	365580			38570	3028	22509	22510	46631	46631					0.14275861816190627
RPFRKHGVVPL	11	Unmodified	_RPFRKHGVVPL_					0	0	0		ENSG00000122026|ENST00000311549|RPL21;ENST00000493466.1_1_4:37823021-37823243:+|nuORF;ENST00000422509.1_1_9:37490797-37490851:-|nuORF;ENST00000473558.5_1_13:27827913-27828439:+|nuORF	ENSG00000122026|ENST00000311549|RPL21	ENSG00000122026|ENST00000311549|RPL21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.93475341796875	3	435.934929	1304.78296	-0.34158	-0.0001489	-0.090503	-3.9453E-05	-0.43208	-0.00018836	435.93487876727687	27.547	1.0168	27.535	27.187	28.203	-0.01156					95	35	4	0	0	0	0.43198	1	4685	4685		7.0371	1.9896	1	340760			38571	3028	22509	22510	46632	46632					0.14275861816190627
RPFSPREAL	9	Unmodified	_RPFSPREAL_					0	0	0		nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1;ENSG00000169641|ENST00000302291|LUZP1	nc|ENSG00000169641|Q86V48-2|LUZP1	nc|ENSG00000169641|Q86V48-2|LUZP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.7857055664062	2	536.79854	1071.58253	0.74037	0.00039743	-0.38552	-0.00020695	0.35485	0.00019049	536.7984089474677	32.34	0.51959	32.34	32.01	32.529	0					34	18	2	0	0	0	0.053988	1	6133	6133		51.415	21.575	1	374120			38572	6373	22510	22511	46633	46633					0.04959967428703749
RPFSPREAL	9	Unmodified	_RPFSPREAL_					0	0	0		nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1;ENSG00000169641|ENST00000302291|LUZP1	nc|ENSG00000169641|Q86V48-2|LUZP1	nc|ENSG00000169641|Q86V48-2|LUZP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.7854614257812	2	536.79854	1071.58253	0.69605	0.00037364	-0.3696	-0.0001984	0.32645	0.00017524	536.7984136846054	32.208	0.4988	32.259	32.002	32.501	0.050388					31	17	2	0	0	0	0.14306	1	6103	6103		45.74	27.594	1	394610			38573	6373	22510	22511	46634	46634					0.04959967428703749
RPFSPREAL	9	Unmodified	_RPFSPREAL_					0	0	0		nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1;ENSG00000169641|ENST00000302291|LUZP1	nc|ENSG00000169641|Q86V48-2|LUZP1	nc|ENSG00000169641|Q86V48-2|LUZP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7855224609375	2	536.79854	1071.58253	0.51626	0.00027713	2.324	0.0012475	2.8402	0.0015246	536.8004221561325	32.285	0.94033	32.339	31.877	32.818	0.054375					49	33	2	0	0	0	0.1558	1	6102	6102		41.956	20.209	1	417130			38574	6373	22510	22511	46635	46635					0.04959967428703749
RPFSPTLRVL	10	Unmodified	_RPFSPTLRVL_					0	0	0		ENST00000250101.9_1_17:6544469-6545099:+|nuORF	ENST00000250101.9_1_17:6544469-6545099:+|nuORF	ENST00000250101.9_1_17:6544469-6545099:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.35888671875	2	593.358765	1184.70298	0.48156	0.00028574	-0.57475	-0.00034104	-0.093195	-5.5298E-05	593.3581312228785	48.664	0.64519	48.696	48.207	48.852	0.032043					43	23	3	0	0	0	0.026238	1	11151	11151		64.927	32.141	1	1001700			38575	8909	22511	22512	46636	46636					0.11801375422351157
RPFSTLHWRL	10	Unmodified	_RPFSTLHWRL_					0	0	0		ENST00000473720.5_1_2:130913661-130934206:-|nuORF	ENST00000473720.5_1_2:130913661-130934206:-|nuORF	ENST00000473720.5_1_2:130913661-130934206:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.24725341796875	3	438.247285	1311.72002	-0.0077712	-3.4057E-06	-0.91215	-0.00039975	-0.91992	-0.00040315	438.24682910360434	24.552	0.8418	24.552	24.194	25.035	0					42	28	2	0	0	0	0.41469	1	3748	3748		0.77653	0.078866	1	72871			38576	10908	22512	22513	46637	46637					0.07663296028135846
RPFTGLEAE	9	Unmodified	_RPFTGLEAE_					0	0	0			REV__ENSG00000186222|ENST00000320776|BLOC1S4	REV__ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.27777099609375	2	510.261456	1018.50836	0.18268	9.3213E-05	1.145	0.00058423	1.3276	0.00067744	510.2617936924464	19.775	0.86077	19.775	19.125	19.986	0					38	30	2	0	0	0	0.29176	1	2332	2332		10.074	0	1	33119	+		38577	18437	22513	22514	46638	46638					-0.00015420453473780071
RPFTNRAWM	9	Unmodified	_RPFTNRAWM_					0	0	0			REV__ENST00000482831.1_1_2:230450711-230451461:-|nuORF	REV__ENST00000482831.1_1_2:230450711-230451461:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.7954711914062	2	589.798017	1177.58148	0.080605	4.7541E-05	-2.0007	-0.00118	-1.9201	-0.0011325	589.7953897512446	14.219	0.59888	14.219	13.992	14.591	0					62	20	5	0	0	0	0.33508	1	677	677		3.5965	0.31518	1	232310	+		38578	21512	22514	22515	46639	46639					-0.0002057021183645702
RPFVRSKR	8	Unmodified	_RPFVRSKR_					0	0	0			REV__ENST00000438298.6_1_6:111895866-111897584:+|nuORF	REV__ENST00000438298.6_1_6:111895866-111897584:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.25732421875	2	523.322517	1044.63048	0.16727	8.7538E-05	-1.4162	-0.00074114	-1.2489	-0.0006536	523.3216348624835	15.328	0.2911	15.264	15.1	15.391	-0.064413					14	9	2	0	0	0	0.34408	1	973	973		2.3027	0	1	38429	+		38579	21024	22515	22516	46640	46640					0.1099508613940543
RPFVTCYSG	9	Unmodified	_RPFVTCYSG_					0	0	0			REV__ENST00000489372.4_1_10:65028894-65029002:-|nuORF	REV__ENST00000489372.4_1_10:65028894-65029002:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.3117065429688	2	515.244752	1028.47495	0.032763	1.6881E-05	-2.8618	-0.0014745	-2.8291	-0.0014577	515.2428887172833	15.047	0.50336	15.047	14.845	15.348	0					26	17	2	0	0	0	0.26031	1	899	899		3.5965	1.019	1	96276	+		38580	21589	22516	22517	46641	46641					-0.0381474549703853
RPFYDEKILI	10	Unmodified	_RPFYDEKILI_					0	0	0			REV__nc|ENSG00000119392|Q53GS7-2|GLE1	REV__nc|ENSG00000119392|Q53GS7-2|GLE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.3637084960938	2	647.363713	1292.71287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.35	1	103.35	102.85	103.85	0								0	0	0	0.37157	1	27463	27463		5.7319	0	1		+		38581	15039	22517	22518	46642	46642					0.07822518637044595
RPFYDEKILI	10	Unmodified	_RPFYDEKILI_					0	0	0			REV__nc|ENSG00000119392|Q53GS7-2|GLE1	REV__nc|ENSG00000119392|Q53GS7-2|GLE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.36328125	2	647.363713	1292.71287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.55	1	103.56	103.06	104.06	0.0082703								0	0	0	0.37157	1	27517	27517		5.7319	0	1		+		38582	15039	22517	22518	46643	46643					0.07822518637044595
RPFYDEKILI	10	Unmodified	_RPFYDEKILI_					0	0	0			REV__nc|ENSG00000119392|Q53GS7-2|GLE1	REV__nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.8636474609375	2	647.363713	1292.71287	0.29009	0.00018779	-0.99025	-0.00064105	-0.70016	-0.00045326	647.86490906725	115.97	0.074135	115.99	115.94	116.02	0.018738					13	9	2	0	0	0	0.40262	1	30104	30104		2.9952	0	1	19961	+		38583	15039	22517	22518	46644	46644					0.07822518637044595
RPFYPAVE	8	Unmodified	_RPFYPAVE_					0	0	0		ENSG00000104643|ENST00000221086|MTMR9	ENSG00000104643|ENST00000221086|MTMR9	ENSG00000104643|ENST00000221086|MTMR9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.756591796875	2	489.75581	977.497067	-0.020685	-1.0131E-05	1.288	0.00063082	1.2673	0.00062069	489.756453928466	14.177	0.33527	14.072	13.903	14.238	-0.10466					23	11	3	0	0	0	0.43302	1	649	649		11.64	3.047	1	353010			38584	1903	22518	22519	46645	46645					0.007418022430442761
RPFYPAVE	8	Unmodified	_RPFYPAVE_					0	0	0		ENSG00000104643|ENST00000221086|MTMR9	ENSG00000104643|ENST00000221086|MTMR9	ENSG00000104643|ENST00000221086|MTMR9	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	489.75581	977.497067	-0.0020928	-1.0249E-06	1.1817	0.00057872	1.1796	0.0005777	489.75638084514634	14.05	0.31673	14.05	13.932	14.249	0	-0.019879	-1.7122E-05	NaN	11.64	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249490			38585	1903	22518	22519							0.007418022430442761
RPGAFKAEL	9	Unmodified	_RPGAFKAEL_					0	0	0		ENSG00000074842|ENST00000262947|MYDGF	ENSG00000074842|ENST00000262947|MYDGF	ENSG00000074842|ENST00000262947|MYDGF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.78253173828125	2	494.782359	987.550165	0.35739	0.00017683	-0.20012	-9.9014E-05	0.15728	7.7818E-05	494.7822935414646	30.774	1.0049	30.774	30.418	31.423	0					77	35	3	0	0	0	0.069258	2	5662	5662;5726		45.74	45.74	1	545540			38586	1030	22519	22520	46646;46647	46646					0.05589180025708629
RPGAFKAEL	9	Unmodified	_RPGAFKAEL_					0	0	0		ENSG00000074842|ENST00000262947|MYDGF	ENSG00000074842|ENST00000262947|MYDGF	ENSG00000074842|ENST00000262947|MYDGF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7825927734375	2	494.782359	987.550165	0.29493	0.00014593	-0.084733	-4.1924E-05	0.2102	0.000104	494.7823436950419	30.807	0.88832	30.835	30.496	31.385	0.027948					73	31	3	0	0	0	0.048637	2	5664	5664;5721		53.404	53.404	1	583700			38587	1030	22519	22520	46648;46649	46648					0.05589180025708629
RPGAFKAEL	9	Unmodified	_RPGAFKAEL_					0	0	0		ENSG00000074842|ENST00000262947|MYDGF	ENSG00000074842|ENST00000262947|MYDGF	ENSG00000074842|ENST00000262947|MYDGF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7825927734375	2	494.782359	987.550165	0.20093	9.9419E-05	0.16621	8.2238E-05	0.36714	0.00018166	494.7824550317749	30.76	0.92725	30.787	30.505	31.433	0.027157					67	33	3	0	0	0	0.09758	2	5653	5653;5714		38.615	38.615	1	600370			38588	1030	22519	22520	46650;46651	46650					0.05589180025708629
RPGAKKGIL	9	Unmodified	_RPGAKKGIL_					0	0	0		nc|ENSG00000132840|Q9H2M3-2|BHMT2;ENSG00000132840|ENST00000255192|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.30865478515625	2	470.308544	938.602535	-0.18487	-8.6944E-05	0.022624	1.064E-05	-0.16224	-7.6304E-05	470.30850535050655	15.495	0.47393	15.495	15.289	15.763	0					36	15	3	0	0	0	0.19747	1	1036	1036		24.021	2.2739	1	139020			38589	3669	22520	22521	46652	46652					0.13077763159321876
RPGAKKGIL	9	Unmodified	_RPGAKKGIL_					0	0	0		nc|ENSG00000132840|Q9H2M3-2|BHMT2;ENSG00000132840|ENST00000255192|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.3085632324219	2	470.308544	938.602535	-0.074242	-3.4917E-05	0.064957	3.055E-05	-0.009285	-4.3668E-06	470.30849648987265	15.622	0.47424	15.512	15.312	15.786	-0.10981					36	15	3	0	0	0	0.23767	1	1071	1071		18.146	3.3081	1	148100			38590	3669	22520	22521	46653	46653					0.13077763159321876
RPGAKKGIL	9	Unmodified	_RPGAKKGIL_					0	0	0		nc|ENSG00000132840|Q9H2M3-2|BHMT2;ENSG00000132840|ENST00000255192|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.3085632324219	2	470.308544	938.602535	-0.028354	-1.3335E-05	-0.08008	-3.7662E-05	-0.10843	-5.0997E-05	470.3085016262946	15.561	0.44938	15.497	15.305	15.754	-0.064413					34	14	3	0	0	0	0.16283	1	1060	1060		29.082	7.3349	1	162120			38591	3669	22520	22521	46654	46654					0.13077763159321876
RPGASAVGAV	10	Unmodified	_RPGASAVGAV_					0	0	0		ENST00000324041.5_1_19:51412052-51412651:-|nuORF;ENST00000598305.5_1_19:51412052-51413945:-|nuORF	ENST00000324041.5_1_19:51412052-51412651:-|nuORF	ENST00000324041.5_1_19:51412052-51412651:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7510681152344	2	442.751059	883.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.398	1	19.398	18.898	19.898	0								0	0	0	0.3367	1	2222	2222		20.415	3.4722	1				38592	9399	22521	22522	46655	46655					0.04116033957518539
RPGASAVGAV	10	Unmodified	_RPGASAVGAV_					0	0	0		ENST00000324041.5_1_19:51412052-51412651:-|nuORF;ENST00000598305.5_1_19:51412052-51413945:-|nuORF	ENST00000324041.5_1_19:51412052-51412651:-|nuORF	ENST00000324041.5_1_19:51412052-51412651:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7510986328125	2	442.751059	883.487565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.506	1	19.45	18.95	19.95	-0.055693								0	0	0	0.34897	1	2253	2253		15.248	0.41021	1				38593	9399	22521	22522	46656	46656					0.04116033957518539
RPGDLPEVLSF	11	Unmodified	_RPGDLPEVLSF_					0	0	0		ENST00000434206.1_1_3:43020805-43095327:+|nuORF;ENSG00000144649|ENST00000430121|GASK1A	ENST00000434206.1_1_3:43020805-43095327:+|nuORF	ENST00000434206.1_1_3:43020805-43095327:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.55535888671875	3	410.555672	1228.64519	-0.12134	-4.9817E-05	-0.15493	-6.3607E-05	-0.27627	-0.00011342	410.5555482675511	29.671	0.74011	29.684	29.329	30.069	0.013475					50	24	3	0	0	0	0.43809	1	5341	5341		6.2344	1.5184	1	237600			38594	4600	22522	22523	46657	46657					0.04001068706224942
RPGDRAKAL	9	Unmodified	_RPGDRAKAL_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.29095458984375	2	492.290882	982.567212	0.10744	5.2892E-05	-2.4115	-0.0011871	-2.304	-0.0011342	492.29103468699066	14.769	0.48114	14.665	14.454	14.935	-0.10466					40	16	4	0	0	0	0.07944	1	857	857		41.956	22.699	1	306230			38595	4462	22523	22524	46658	46658					0.07523100631499346
RPGDRAKAL	9	Unmodified	_RPGDRAKAL_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	492.290882	982.567212	0.063931	3.1472E-05	-2.6004	-0.0012802	-2.5365	-0.0012487	492.2910847649514	14.636	0.50134	14.636	14.423	14.925	0	-0.045125	-0.00025897	NaN	41.956	48	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224010			38596	4462	22523	22524							0.07523100631499346
RPGECFGL	8	Unmodified	_RPGECFGL_					0	0	0		nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000437791.2_1_9:139904571-139904793:-|nuORF;ENSG00000198691|ENST00000370225|ABCA4	nc|ENSG00000107331|Q9BZC7|ABCA2	nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.7132263183594	2	439.713088	877.411622	-0.059153	-2.601E-05	0.52383	0.00023034	0.46468	0.00020433	439.71323069445583	66.914	0.69164	66.9	66.603	67.294	-0.013588					40	24	2	0	0	0	0.4419	1	16738	16738		8.5933	0	1	428880			38597	2121	22524	22525	46659	46659					-0.0319868621426167
RPGGRERARL	10	Unmodified	_RPGGRERARL_					0	0	0		ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3067016601562	2	584.344512	1166.67447	-0.011799	-6.8947E-06	0.60393	0.0003529	0.59213	0.00034601	584.3447115095851	14.136	0.25747	14.07	13.949	14.206	-0.066068					10	8	2	0	0	0	0.32072	1	627	627		2.9952	0.26005	1	38539			38598	4691	22525	22526	46660	46660					0.09780070565739152
RPGGRTRRYHL	11	Unmodified	_RPGGRTRRYHL_					0	0	0		ENSG00000070388|ENST00000215530|FGF22	ENSG00000070388|ENST00000215530|FGF22	ENSG00000070388|ENST00000215530|FGF22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.6081237792969	3	456.928837	1367.76468	0.27422	0.0001253	-0.76415	-0.00034916	-0.48993	-0.00022386	457.2631293809583	90.078	0.10141	90.078	90.003	90.105	0.00039673					9	7	2	0	0	0	0.33056	1	23831	23831		8.7518	2.1283	1	57699			38599	924	22526	22527	46661	46661					0.09551119894172189
RPGIAGGFH	9	Unmodified	_RPGIAGGFH_					0	0	0		ENST00000337851.8_1_5:155754076-155771499:+|nuORF	ENST00000337851.8_1_5:155754076-155771499:+|nuORF	ENST00000337851.8_1_5:155754076-155771499:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2439270019531	2	456.245944	910.477334	0.19261	8.7879E-05	-0.89727	-0.00040938	-0.70466	-0.0003215	456.2437344640177	21.905	1.0277	21.805	21.443	22.471	-0.10034					59	37	3	0	0	0	0.23775	1	3001	3001		18.135	4.6271	1	162450			38600	9497	22527	22528	46662	46662					0.018514710229510456
RPGLAQGL	8	Unmodified	_RPGLAQGL_					0	0	0			REV__ENST00000534532.6_1_11:134094237-134094411:-|nuORF	REV__ENST00000534532.6_1_11:134094237-134094411:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.24365234375	2	406.24287	810.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104	1	104	103.5	104.5	0								0	0	0	0.37724	1	27618	27618		2.3027	0	1		+		38601	22052	22528	22529	46663	46663					0.05836952791423755
RPGLERQER	9	Unmodified	_RPGLERQER_					0	0	0			REV__ENSG00000107816|ENST00000454422|LZTS2	REV__ENSG00000107816|ENST00000454422|LZTS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.815185546875	2	570.815253	1139.61595	0.27188	0.0001552	-0.42527	-0.00024275	-0.15338	-8.7553E-05	570.8150503336274	21.487	0.48204	21.438	21.207	21.689	-0.049377					30	16	2	0	0	0	0.32371	1	2865	2865		5.2969	0	1	118300	+		38602	14565	22529	22530	46664	46664					0.051729692006119876
RPGLERQER	9	Unmodified	_RPGLERQER_					0	0	0			REV__ENSG00000107816|ENST00000454422|LZTS2	REV__ENSG00000107816|ENST00000454422|LZTS2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	570.815253	1139.61595	0.28885	0.00016488	-0.32828	-0.00018739	-0.039426	-2.2505E-05	570.8150921891857	21.465	0.56185	21.465	21.169	21.731	0	0.01494	8.4139E-05	NaN	5.2969	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100080	+		38603	14565	22529	22530							0.051729692006119876
RPGLERQER	9	Unmodified	_RPGLERQER_					0	0	0			REV__ENSG00000107816|ENST00000454422|LZTS2	REV__ENSG00000107816|ENST00000454422|LZTS2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	570.815253	1139.61595	0.49132	0.00028045	-0.49232	-0.00028102	-0.00099671	-5.6894E-07	570.8149796242553	21.548	0.43857	21.448	21.244	21.682	-0.10034	-0.0021794	-0.00010314	NaN	5.2969	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93805	+		38604	14565	22529	22530							0.051729692006119876
RPGLERQER	9	Unmodified	_RPGLERQER_					0	0	0			REV__ENSG00000107816|ENST00000454422|LZTS2	REV__ENSG00000107816|ENST00000454422|LZTS2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	570.815253	1139.61595	0.27188	0.0001552	-0.42527	-0.00024275	-0.15338	-8.7553E-05	570.8150503336274	21.487	0.48204	21.438	21.207	21.689	-0.049377	-0.012761	-2.6586E-05	NaN	5.2969	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118300	+		38605	14565	22529	22530							0.051729692006119876
RPGMGPTCF	9	Unmodified	_RPGMGPTCF_					0	0	0			REV__ENST00000551538.5_1_14:105961883-105962582:+|nuORF;REV__ENSG00000185347|ENST00000392523|TEDC1	REV__ENST00000551538.5_1_14:105961883-105962582:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2379455566406	2	483.220223	964.425892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.387	1	25.355	24.855	25.855	-0.031408								0	0	0	0.25631	1	4035	4035		4.3292	1.44	1		+		38606	22209;18374	22530	22531	46665	46665					-0.05774357057634916
RPGMGYMKLSM	11	Unmodified	_RPGMGYMKLSM_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2067565917969	3	424.208345	1269.6032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.062	1	24.062	23.562	24.562	0								0	0	0	0.34766	1	3636	3636		4.4062	0.28952	1		+		38607	18809	22531	22532	46666	46666					-0.02081269569816868
RPGNFSHSL	9	Unmodified	_RPGNFSHSL_					0	0	0		chr3:155829755-155829856|505|14.1|0.8|4.14|-|ENST00000644855|SLC33A1,SLC33A1;ENSG00000169359|ENST00000643144|SLC33A1	chr3:155829755-155829856|505|14.1|0.8|4.14|-|ENST00000644855|SLC33A1,SLC33A1	chr3:155829755-155829856|505|14.1|0.8|4.14|-|ENST00000644855|SLC33A1,SLC33A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7594299316406	2	507.759415	1013.50428	0.23845	0.00012108	-0.093423	-4.7437E-05	0.14503	7.364E-05	507.75932324055657	24.19	0.89963	24.19	23.943	24.843	0					68	30	3	0	0	0	0.11234	1	3677	3677		51.63	11.672	1	241520			38608	160	22532	22533	46667	46667					-0.0019346515653069218
RPGNFSHSL	9	Unmodified	_RPGNFSHSL_					0	0	0		chr3:155829755-155829856|505|14.1|0.8|4.14|-|ENST00000644855|SLC33A1,SLC33A1;ENSG00000169359|ENST00000643144|SLC33A1	chr3:155829755-155829856|505|14.1|0.8|4.14|-|ENST00000644855|SLC33A1,SLC33A1	chr3:155829755-155829856|505|14.1|0.8|4.14|-|ENST00000644855|SLC33A1,SLC33A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7595520019531	2	507.759415	1013.50428	0.29201	0.00014827	-0.2051	-0.00010414	0.08691	4.4129E-05	507.7592973715111	24.436	0.81653	24.363	24.055	24.872	-0.072559					68	27	4	0	0	0	0.035405	1	3733	3733		79.596	22.125	1	280930			38609	160	22532	22533	46668	46668					-0.0019346515653069218
RPGNFSHSL	9	Unmodified	_RPGNFSHSL_					0	0	0		chr3:155829755-155829856|505|14.1|0.8|4.14|-|ENST00000644855|SLC33A1,SLC33A1;ENSG00000169359|ENST00000643144|SLC33A1	chr3:155829755-155829856|505|14.1|0.8|4.14|-|ENST00000644855|SLC33A1,SLC33A1	chr3:155829755-155829856|505|14.1|0.8|4.14|-|ENST00000644855|SLC33A1,SLC33A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.75933837890625	2	507.759415	1013.50428	0.152	7.7177E-05	0.00042768	2.1716E-07	0.15242	7.7394E-05	507.7593573869839	24.375	0.80565	24.336	24.108	24.914	-0.038927					59	27	3	0	0	0	0.037019	1	3728	3728		57.722	15.627	1	274660			38610	160	22532	22533	46669	46669					-0.0019346515653069218
RPGPEKAVL	9	Unmodified	_RPGPEKAVL_					0	0	0		ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2;ENST00000467609.5_1_17:19582001-19584787:-|nuORF	ENSG00000180638|ENST00000433844|SLC47A2	ENSG00000180638|ENST00000433844|SLC47A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.3057861328125	2	483.790184	965.565815	0.12251	5.9267E-05	0.44701	0.00021626	0.56951	0.00027552	483.79020485022863	23.583	0.93337	23.51	23.033	23.966	-0.072559					72	32	3	0	0	0	0.17277	1	3466	3466		27.629	3.6082	1	288240			38611	7195	22533	22534	46670	46670					0.08165466542754984
RPGPEKAVL	9	Unmodified	_RPGPEKAVL_					0	0	0		ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2;ENST00000467609.5_1_17:19582001-19584787:-|nuORF	ENSG00000180638|ENST00000433844|SLC47A2	ENSG00000180638|ENST00000433844|SLC47A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.305908203125	2	483.790184	965.565815	0.32637	0.00015789	0.65828	0.00031847	0.98464	0.00047636	483.7901362219632	23.6	1.0661	23.561	22.983	24.049	-0.038927					72	37	3	0	0	0	0.25112	1	3458	3458		16.149	1.3108	1	221950			38612	7195	22533	22534	46671	46671					0.08165466542754984
RPGPITSRNV	10	Unmodified	_RPGPITSRNV_					0	0	0		nc|ENSG00000173264|Q96N19-4|GPR137	nc|ENSG00000173264|Q96N19-4|GPR137	nc|ENSG00000173264|Q96N19-4|GPR137	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3251953125	2	548.814722	1095.61489	0.35682	0.00019583	-0.61083	-0.00033523	-0.25401	-0.00013941	548.8144848948158	25.818	1.0057	25.795	25.524	26.53	-0.022238					48	35	2	0	0	0	0.32011	1	4117	4117		4.5289	0	1	238490			38613	12839	22534	22535	46672	46672					0.07090754831688173
RPGQGRLRILL	11	Unmodified	_RPGQGRLRILL_					0	0	0			REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	639.9096069335938	2	639.909488	1277.80442	0.71851	0.00045978	-0.3591	-0.00022979	0.3594	0.00022999	639.90922479267	37.504	0.74968	37.504	37.285	38.034	0					57	26	3	0	0	0	0.31508	2	7730	7730;7784		26.268	9.1552	1	691120	+		38614	23250	22535	22536	46673;46674	46673					0.1766324684490428
RPGQGRLRILL	11	Unmodified	_RPGQGRLRILL_					0	0	0			REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	639.9097290039062	2	639.909488	1277.80442	0.56348	0.00036058	-0.23687	-0.00015158	0.32661	0.000209	639.9093011670561	37.495	0.67493	37.583	37.305	37.98	0.087406					62	24	3	0	0	0	0.38765	2	7760	7708;7760		15.248	10.72	1	629140	+		38615	23250	22535	22536	46675;46676	46676					0.1766324684490428
RPGQGRLRILL	11	Unmodified	_RPGQGRLRILL_					0	0	0			REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	639.90966796875	2	639.909488	1277.80442	0.54478	0.00034861	-0.23309	-0.00014916	0.3117	0.00019946	639.9093167953049	37.419	0.61747	37.512	37.331	37.948	0.093014					61	22	3	0	0	0	0.258	2	7700	7700;7747		26.268	5.8536	1	649480	+		38616	23250	22535	22536	46677;46678	46677					0.1766324684490428
RPGQGRLRILL	11	Unmodified	_RPGQGRLRILL_					0	0	0			REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	639.909488	1277.80442	0.71851	0.00045978	-0.3591	-0.00022979	0.3594	0.00022999	639.90922479267	37.504	0.74968	37.504	37.285	38.034	0	-0.028671	-0.00010873	NaN	26.268	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	691120	+		38617	23250	22535	22536							0.1766324684490428
RPGQGRLRILL	11	Unmodified	_RPGQGRLRILL_					0	0	0			REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	639.909488	1277.80442	0.56348	0.00036058	-0.23687	-0.00015158	0.32661	0.000209	639.9093011670561	37.495	0.67493	37.583	37.305	37.98	0.087406	0.04986	4.7707E-05	NaN	26.268	62	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	629140	+		38618	23250	22535	22536							0.1766324684490428
RPGQGRLRILL	11	Unmodified	_RPGQGRLRILL_					0	0	0			REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	639.909488	1277.80442	0.54478	0.00034861	-0.23309	-0.00014916	0.3117	0.00019946	639.9093167953049	37.419	0.61747	37.512	37.331	37.948	0.093014	-0.021188	5.2548E-05	NaN	26.268	61	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	649480	+		38619	23250	22535	22536							0.1766324684490428
RPGQPTGST	9	Unmodified	_RPGQPTGST_					0	0	0			REV__ENST00000465708.5_1_9:4285945-4286425:-|nuORF	REV__ENST00000465708.5_1_9:4285945-4286425:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.91632080078125	2	450.730323	899.446094	-0.017916	-8.0753E-06	2.0942	0.00094392	2.0763	0.00093584	450.7305241160076	17.813	0.38058	17.696	17.631	18.012	-0.11739					16	12	2	0	0	0	0.26031	1	1770	1770		3.5965	0	1	21089	+		38620	14549	22536	22537	46679	46679					-0.007651468018138985
RPGQRVYVV	9	Unmodified	_RPGQRVYVV_					0	0	0		ENSG00000164690|ENST00000297261|SHH	ENSG00000164690|ENST00000297261|SHH	ENSG00000164690|ENST00000297261|SHH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2962646484375	2	537.314358	1072.61416	0.18957	0.00010186	-0.44754	-0.00024047	-0.25797	-0.00013861	537.3140009862996	30.146	0.48843	30.173	29.987	30.476	0.027157					30	16	2	0	0	0	0.30623	1	5534	5534		7.9102	0	1	171050			38621	5865	22537	22538	46680	46680					0.08075960182645758
RPGQVTIT	8	Unmodified	_RPGQVTIT_					0	0	0			REV__nc|ENSG00000244682|P31995-4|FCGR2C	REV__nc|ENSG00000244682|P31995-4|FCGR2C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.2543640136719	2	436.253434	870.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.73	1	103.74	103.24	104.24	0.0082703								0	0	0	0.37183	1	27561	27561		4.756	0	1		+		38622	23213	22538	22539	46681	46681					0.051889181002820806
RPGRPAKNK	9	Unmodified	_RPGRPAKNK_					0	0	0		ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.3115234375	2	512.312149	1022.60975	0.047835	2.4507E-05	-0.55772	-0.00028573	-0.50989	-0.00026122	512.3115673804535	15.597	0.74798	15.487	15.068	15.816	-0.10981					39	25	2	0	0	0	0.33276	1	1080	1080		3.9444	0.94915	1	47964			38623	6139	22539	22540	46682	46682					0.09934495759739548
RPGRPAKNK	9	Unmodified	_RPGRPAKNK_					0	0	0		ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	512.312149	1022.60975	0.062564	3.2052E-05	-0.776	-0.00039755	-0.71343	-0.0003655	512.3115117142634	15.499	0.68977	15.499	15.044	15.734	0	-0.0035683	-8.9276E-05	NaN	3.9444	39	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49561			38624	6139	22539	22540							0.09934495759739548
RPGRPRRPRRQ	11	Unmodified	_RPGRPRRPRRQ_					0	0	0		ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	ENST00000296350.9_1_3:196729451-196730141:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.8155212402344	3	477.959131	1430.85556	0.17884	8.5476E-05	-0.31628	-0.00015117	-0.13744	-6.5692E-05	477.95913127531736	94.175	0.43687	94.261	94.104	94.541	0.086678					52	35	2	0	0	0	0.33347	1	25066	25066		0.45452	0	1	181750			38625	9182	22540	22541	46683	46683					0.15737008662290464
RPGRRLPPP	9	Unmodified	_RPGRRLPPP_					0	0	0		ENST00000533293.1_1_14:24779443-24780712:+|nuORF	ENST00000533293.1_1_14:24779443-24780712:+|nuORF	ENST00000533293.1_1_14:24779443-24780712:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.32275390625	2	523.322517	1044.63048	0.4894	0.00025611	-0.21932	-0.00011477	0.27008	0.00014134	523.3223189103567	17.187	1.1148	17.127	16.81	17.925	-0.060429					92	39	3	0	0	0	0.22188	1	1631	1631		20.454	1.1966	1	252600			38626	11648	22541	22542	46684	46684					0.1099508613940543
RPGRRRWMRRW	11	Unmodified	_RPGRRRWMRRW_					0	0	0		ENST00000296861.2_1_6:47277174-47277357:-|nuORF	ENST00000296861.2_1_6:47277174-47277357:-|nuORF	ENST00000296861.2_1_6:47277174-47277357:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.3051147460938	3	538.304133	1611.89057	0.19552	0.00010525	1.8957	0.0010205	2.0912	0.0011257	538.3045309074336	111.62	0.48669	111.61	111.34	111.82	-0.013939					111	64	3	0	0	0	0.48495	1	29048	29048		0.08335	0.08335	1	283310			38627	9195	22542	22543	46685	46685					0.10909928198589114
RPGRRRWMRRW	11	Unmodified	_RPGRRRWMRRW_					0	0	0		ENST00000296861.2_1_6:47277174-47277357:-|nuORF	ENST00000296861.2_1_6:47277174-47277357:-|nuORF	ENST00000296861.2_1_6:47277174-47277357:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	538.304133	1611.89057	0.078743	4.2387E-05	1.1468	0.00061733	1.2255	0.00065972	538.304040710606	111.54	0.25029	111.54	111.4	111.65	0	-0.061593	-0.00069288	NaN	0.08335	51	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147820			38628	9195	22542	22543							0.10909928198589114
RPGRRRWMRRW	11	Unmodified	_RPGRRRWMRRW_					0	0	0		ENST00000296861.2_1_6:47277174-47277357:-|nuORF	ENST00000296861.2_1_6:47277174-47277357:-|nuORF	ENST00000296861.2_1_6:47277174-47277357:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	538.304133	1611.89057	0.45386	0.00024431	1.398	0.00075254	1.8518	0.00099685	538.304556399115	111.65	0.26518	111.67	111.56	111.82	0.01152	0.060883	-0.00028726	NaN	0.08335	62	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220870			38629	9195	22542	22543							0.10909928198589114
RPGSRCSQAPR	11	Unmodified	_RPGSRCSQAPR_					0	0	0			REV__nc|ENSG00000162913|Q96MR7|OBSCN-AS1	REV__nc|ENSG00000162913|Q96MR7|OBSCN-AS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.9051818847656	3	405.543884	1213.60982	0.24409	9.899E-05	0.14957	6.0657E-05	0.39366	0.00015965	405.54376548784563	20.382	0.46568	20.329	20.202	20.667	-0.05291					26	16	2	0	0	0	0.33149	1	2565	2565		2.4348	0	1	81618	+		38630	23055	22543	22544	46686	46686					0.011561276974362045
RPGSRCSQAPR	11	Unmodified	_RPGSRCSQAPR_					0	0	0			REV__nc|ENSG00000162913|Q96MR7|OBSCN-AS1	REV__nc|ENSG00000162913|Q96MR7|OBSCN-AS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	405.543884	1213.60982	0.15674	6.3567E-05	0.48761	0.00019775	0.64436	0.00026132	405.54409846562373	20.62	0.40338	20.51	20.35	20.753	-0.11003	0.090404	0.00025076	NaN	2.4348	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76676	+		38631	23055	22543	22544							0.011561276974362045
RPGSRVLLL	9	Unmodified	_RPGSRVLLL_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.82745361328125	2	505.827101	1009.63965	-0.06475	-3.2752E-05	1.2422	0.00062835	1.1775	0.0005956	505.8276603051371	38.826	0.64328	38.826	38.546	39.189	0					55	22	4	0	0	0	0.14786	1	8124	8124		31.268	7.2478	1	739660			38632	5536	22544	22545	46687	46687					0.13521434705091906
RPGSRVLLL	9	Unmodified	_RPGSRVLLL_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.82733154296875	2	505.827101	1009.63965	0.26276	0.00013291	0.72904	0.00036877	0.9918	0.00050168	505.82739994281906	38.776	0.63145	38.868	38.57	39.201	0.09267					51	22	3	0	0	0	0.23767	1	8114	8114		18.146	3.3081	1	829980			38633	5536	22544	22545	46688	46688					0.13521434705091906
RPGSRVLLL	9	Unmodified	_RPGSRVLLL_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.8272399902344	2	505.827101	1009.63965	0.48079	0.0002432	0.67166	0.00033974	1.1524	0.00058294	505.8273486683844	38.72	0.55739	38.819	38.597	39.155	0.099064					34	19	2	0	0	0	0.16685	1	8099	8099		28.495	6.7479	1	736880			38634	5536	22544	22545	46689	46689					0.13521434705091906
RPGVRLLCE	9	Unmodified	_RPGVRLLCE_					0	0	0			REV__ENST00000535612.5_2_19:19144688-19145023:+|nuORF	REV__ENST00000535612.5_2_19:19144688-19145023:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2695922851562	2	521.794943	1041.57533	0.1237	6.4548E-05	0.10614	5.5383E-05	0.22984	0.00011993	521.7948017539434	15.347	0.38698	15.283	15.1	15.487	-0.064413					16	12	3	0	0	0	0.25622	1	981	981		7.2892	0.56607	1	63736	+		38635	22069	22545	22546	46690	46690					0.0562091155663893
RPGVRLLCE	9	Unmodified	_RPGVRLLCE_					0	0	0			REV__ENST00000535612.5_2_19:19144688-19145023:+|nuORF	REV__ENST00000535612.5_2_19:19144688-19145023:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.794943	1041.57533	0.16491	8.6048E-05	-0.22216	-0.00011592	-0.057249	-2.9872E-05	521.7946597933451	15.25	0.37002	15.25	15.012	15.382	0	0.0046664	-5.0259E-05	NaN	7.2892	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58036	+		38636	22069	22545	22546							0.0562091155663893
RPGYRVKEI	9	Unmodified	_RPGYRVKEI_					0	0	0		nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18	nc|ENSG00000150459|O00422|SAP18	nc|ENSG00000150459|O00422|SAP18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7756958007812	2	559.327465	1116.64038	0.35907	0.00020084	-0.56535	-0.00031622	-0.20628	-0.00011538	559.3271371371479	21.367	0.74222	21.367	21.052	21.795	0					60	25	3	0	0	0	0.25843	1	2760	2760		5.7319	5.7319	1	348270			38637	4910	22546	22547	46691	46691					0.08672229354147021
RPGYRVKEI	9	Unmodified	_RPGYRVKEI_					0	0	0		nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18	nc|ENSG00000150459|O00422|SAP18	nc|ENSG00000150459|O00422|SAP18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.3276977539062	2	559.327465	1116.64038	0.29412	0.00016451	-0.2184	-0.00012216	0.075722	4.2353E-05	559.3274220742873	21.422	0.68231	21.372	21.092	21.774	-0.049377					62	23	3	0	0	0	0.18208	1	2808	2808		26.268	11.43	1	332070			38638	4910	22546	22547	46692	46692					0.08672229354147021
RPHAPGLTV	9	Unmodified	_RPHAPGLTV_					0	0	0			REV__ENST00000607074.1_1_6:170581575-170581749:+|nuORF	REV__ENST00000607074.1_1_6:170581575-170581749:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.27471923828125	2	474.274701	946.534849	0.018475	8.7623E-06	0.025297	1.1998E-05	0.043772	2.076E-05	474.2745458170285	25.386	0.7333	25.386	25.035	25.769	0					55	24	3	0	0	0	0.28674	1	4004	4004		10.824	0	1	257840	+		38639	22665	22547	22548	46693	46693					0.05944313228519604
RPHAPGLTV	9	Unmodified	_RPHAPGLTV_					0	0	0			REV__ENST00000607074.1_1_6:170581575-170581749:+|nuORF	REV__ENST00000607074.1_1_6:170581575-170581749:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	474.274701	946.534849	-0.030678	-1.455E-05	0.089873	4.2625E-05	0.059196	2.8075E-05	474.2746018868185	25.448	0.60285	25.392	25.074	25.677	-0.055931	-0.023808	1.2289E-05	NaN	10.824	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249090	+		38640	22665	22547	22548							0.05944313228519604
RPHAPGLTV	9	Unmodified	_RPHAPGLTV_					0	0	0			REV__ENST00000607074.1_1_6:170581575-170581749:+|nuORF	REV__ENST00000607074.1_1_6:170581575-170581749:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	474.274701	946.534849	-0.10258	-4.8649E-05	0.10237	4.8551E-05	-0.0002083	-9.8792E-08	474.274695853528	25.501	0.63969	25.47	25.098	25.738	-0.031408	0.053544	2.4141E-05	NaN	10.824	56	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256990	+		38641	22665	22547	22548							0.05944313228519604
RPHAPGRPA	9	Unmodified	_RPHAPGRPA_					0	0	0		nc|ENSG00000108963|Q9BZG8-2|DPH1;ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1	nc|ENSG00000108963|Q9BZG8-2|DPH1	nc|ENSG00000108963|Q9BZG8-2|DPH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.76995849609375	2	479.770117	957.525681	-0.13077	-6.2741E-05	-0.41136	-0.00019736	-0.54214	-0.0002601	479.76993495078716	13.757	0.38096	13.653	13.435	13.816	-0.10466					22	13	2	0	0	0	0.23767	1	533	533		18.146	4.2403	1	77080			38642	2227	22548	22549	46694	46694					0.045219646628424925
RPHAPGRPA	9	Unmodified	_RPHAPGRPA_					0	0	0		nc|ENSG00000108963|Q9BZG8-2|DPH1;ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1	nc|ENSG00000108963|Q9BZG8-2|DPH1	nc|ENSG00000108963|Q9BZG8-2|DPH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	479.770117	957.525681	-0.14802	-7.1018E-05	-0.35994	-0.00017269	-0.50796	-0.0002437	479.7699756870846	13.637	0.30984	13.637	13.484	13.794	0	-0.0078992	2.1552E-05	NaN	18.146	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73629			38643	2227	22548	22549							0.045219646628424925
RPHETGGYML	10	Oxidation (M)	_RPHETGGYM(Oxidation (M))L_		RPHETGGYM(1)L		RPHETGGYM(87)L	0	0	1		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-2|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.777099609375	2	588.776948	1175.53934	0.32735	0.00019273	0.11955	7.039E-05	0.4469	0.00026312	588.7769801646831	25.013	1.25	25.013	24.312	25.562	0					106	42	4	0	0	0	0.0057544	3	3921	3870;3921;3973		87.258	69.112	1	1090300			38644	2642	22549	22550	46695;46696;46697	46696		328			-0.04140590410884215
RPHETGGYML	10	Oxidation (M)	_RPHETGGYM(Oxidation (M))L_		RPHETGGYM(1)L		RPHETGGYM(110)L	0	0	1		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-2|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.7771606445312	2	588.776948	1175.53934	0.15809	9.3079E-05	0.43789	0.00025782	0.59598	0.0003509	588.777153997817	25.147	0.95835	25.092	24.719	25.677	-0.055931					98	33	4	0	0	0	0.0014947	3	3968	3923;3968;4014		114.19	88.787	1	1063900			38645	2642	22549	22550	46698;46699;46700	46699		328			-0.04140590410884215
RPHFSIIAI	9	Unmodified	_RPHFSIIAI_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ;ENST00000582864.1_1_17:65184426-65184723:-|nuORF	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3150024414062	2	527.313826	1052.6131	0.65746	0.00034669	1.0918	0.00057573	1.7493	0.00092242	527.3142823649866	53.493	0.54803	53.493	53.228	53.776	0					48	20	3	0	0	0	0.05341	1	12643	12643		51.63	9.5352	1	1303200			38646	8057	22550	22551	46701	46701					0.08889745813735317
RPHFSIIAI	9	Unmodified	_RPHFSIIAI_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ;ENST00000582864.1_1_17:65184426-65184723:-|nuORF	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3143920898438	2	527.313826	1052.6131	0.59581	0.00031418	-0.21871	-0.00011533	0.3771	0.00019885	527.3135994260919	53.658	0.58277	53.648	53.401	53.984	-0.0096092					54	21	3	0	0	0	0.074552	1	12662	12662		43.772	9.3707	1	1636300			38647	8057	22550	22551	46702	46702					0.08889745813735317
RPHGAPAEGP	10	Unmodified	_RPHGAPAEGP_					0	0	0			REV__ENST00000474125.6_1_10:102771704-102781716:-|nuORF	REV__ENST00000474125.6_1_10:102771704-102781716:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.771484375	2	494.75159	987.488627	0.04683	2.3169E-05	0.19408	9.602E-05	0.24091	0.00011919	494.75169958556415	14.769	0.46931	14.704	14.456	14.925	-0.064939					30	16	2	0	0	0	0.255	1	857	857		34.402	2.0962	1	124320	+		38648	21389	22551	22552	46703	46703					-0.005617516735810568
RPHGGGTHL	9	Unmodified	_RPHGGGTHL_					0	0	0			REV__ENST00000603055.1_1_16:3614272-3617284:-|nuORF	REV__ENST00000603055.1_1_16:3614272-3617284:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.76373291015625	2	466.246475	930.478397	-0.087252	-4.0681E-05	-1.639	-0.00076418	-1.7262	-0.00080486	466.2454565353385	23.583	0.53382	23.51	23.257	23.791	-0.072559					22	18	2	0	0	0	0.25202	1	3462	3462		10.824	4.6181	1	54753	+		38649	22646	22552	22553	46704	46704					0.010376853918501183
RPHGQQIVF	9	Unmodified	_RPHGQQIVF_					0	0	0		ENST00000566842.5_1_16:29918195-29922616:-|nuORF;ENSG00000174943|ENST00000568000|KCTD13	ENST00000566842.5_1_16:29918195-29922616:-|nuORF	ENST00000566842.5_1_16:29918195-29922616:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2993774414062	2	541.298707	1080.58286	0.5314	0.00028765	0.41149	0.00022274	0.9429	0.00051039	541.2987906359932	29.449	0.47365	29.462	29.272	29.746	0.012266					29	15	3	0	0	0	0.25314	1	5283	5283		15.847	0	1	163440			38650	6828	22553	22554	46705	46705					0.04579387148555725
RPHGWHFG	8	Unmodified	_RPHGWHFG_					0	0	0		ENST00000332783.11_1_15:101142769-101143240:+|nuORF	ENST00000332783.11_1_15:101142769-101143240:+|nuORF	ENST00000332783.11_1_15:101142769-101143240:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2442932128906	2	497.243735	992.472918	0.43021	0.00021392	-0.2434	-0.00012103	0.18681	9.289E-05	497.243753988072	17.122	0.40961	17.061	16.859	17.269	-0.060429					21	14	2	0	0	0	0.45942	1	1533	1533		2.5775	0	1	44037			38651	9454	22554	22555	46706	46706					-0.023619933999725617
RPHGWHFG	8	Unmodified	_RPHGWHFG_					0	0	0		ENST00000332783.11_1_15:101142769-101143240:+|nuORF	ENST00000332783.11_1_15:101142769-101143240:+|nuORF	ENST00000332783.11_1_15:101142769-101143240:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	497.243735	992.472918	0.3624	0.0001802	-0.36652	-0.00018225	-0.0041197	-2.0485E-06	497.24358010609797	17.039	0.31862	17.039	16.867	17.186	0	-0.010769	-0.00025399	NaN	2.5775	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51158			38652	9454	22554	22555							-0.023619933999725617
RPHGWHFG	8	Unmodified	_RPHGWHFG_					0	0	0		ENST00000332783.11_1_15:101142769-101143240:+|nuORF	ENST00000332783.11_1_15:101142769-101143240:+|nuORF	ENST00000332783.11_1_15:101142769-101143240:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.243735	992.472918	0.19314	9.6037E-05	0.02671	1.3281E-05	0.21985	0.00010932	497.2437991466312	17.167	0.37508	17.049	16.884	17.259	-0.11739	-0.00067931	0.00013707	NaN	2.5775	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50236			38653	9454	22554	22555							-0.023619933999725617
RPHHDASTF	9	Unmodified	_RPHHDASTF_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.254638671875	2	534.254497	1066.49444	0.16642	8.891E-05	0.24888	0.00013297	0.4153	0.00022188	534.2546258408586	13.855	0.42638	13.855	13.687	14.113	0					37	14	4	0	0	0	0.0046246	1	545	545		89.401	64.001	1	705390			38654	5048	22555	22556	46707	46707					-0.03614653161912429
RPHHDASTF	9	Unmodified	_RPHHDASTF_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2547607421875	2	534.254497	1066.49444	-0.035398	-1.8912E-05	0.56123	0.00029984	0.52584	0.00028093	534.254827430478	13.979	0.50078	13.875	13.685	14.185	-0.10466					46	17	4	0	0	0	0.0010463	1	580	580		122.18	89.874	1	652400			38655	5048	22555	22556	46708	46708					-0.03614653161912429
RPHHDASTF	9	Unmodified	_RPHHDASTF_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2548217773438	2	534.254497	1066.49444	0.10803	5.7713E-05	0.44169	0.00023598	0.54972	0.00029369	534.2546821257959	13.947	0.38181	13.881	13.716	14.098	-0.066068					36	12	4	0	0	0	0.00078391	1	568	568		125.53	87.555	1	791560			38656	5048	22555	22556	46709	46709					-0.03614653161912429
RPHIIQKTL	9	Unmodified	_RPHIIQKTL_					0	0	0		nc|ENSG00000114948|O75077-3|ADAM23;nc|ENSG00000114948|O75077-2|ADAM23;ENSG00000114948|ENST00000264377|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7908935546875	2	553.345658	1104.67676	0.018559	1.0269E-05	0.041972	2.3225E-05	0.060531	3.3494E-05	553.3456256680308	13.683	0.22681	13.683	13.567	13.794	0					16	7	3	0	0	0	0.26188	1	525	525		1.6526	0.17072	1	48948			38657	2596	22556	22557	46710	46710					0.12861106250852572
RPHIIQKTL	9	Unmodified	_RPHIIQKTL_					0	0	0		nc|ENSG00000114948|O75077-3|ADAM23;nc|ENSG00000114948|O75077-2|ADAM23;ENSG00000114948|ENST00000264377|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7904052734375	2	553.345658	1104.67676	-0.050678	-2.8042E-05	0.19533	0.00010809	0.14465	8.0043E-05	553.3457629619749	13.784	0.25874	13.718	13.602	13.861	-0.066067					11	8	2	0	0	0	0.26188	1	556	556		1.6526	1.0511	1	43539			38658	2596	22556	22557	46711	46711					0.12861106250852572
RPHKPGLYL	9	Unmodified	_RPHKPGLYL_					0	0	0		ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7774658203125	2	540.819276	1079.624	0.35941	0.00019437	-0.060025	-3.2463E-05	0.29938	0.00016191	540.8191297737376	26.383	0.48433	26.383	26.189	26.673	0					27	16	2	0	0	0	0.21389	1	4333	4333		25.399	13.759	1	137640			38659	6637	22557	22558	46712	46712					0.08737148188038191
RPHKPGLYL	9	Unmodified	_RPHKPGLYL_					0	0	0		ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.777587890625	2	540.819276	1079.624	0.38086	0.00020598	-0.60017	-0.00032458	-0.21931	-0.00011861	540.8188952701389	26.469	0.45728	26.43	26.206	26.664	-0.038671					26	15	2	0	0	0	0.1939	1	4365	4365		30.637	13.524	1	142610			38660	6637	22557	22558	46713	46713					0.08737148188038191
RPHKPGLYL	9	Unmodified	_RPHKPGLYL_					0	0	0		ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	ENSG00000172469|ENST00000358812|MANEA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7774658203125	2	540.819276	1079.624	0.68805	0.00037211	-0.50323	-0.00027215	0.18483	9.9958E-05	540.8189469422506	26.527	0.45826	26.505	26.328	26.786	-0.022238					27	15	2	0	0	0	0.1854	1	4410	4410		32.305	16.458	1	168140			38661	6637	22557	22558	46714	46714					0.08737148188038191
RPHLRGSRL	9	Unmodified	_RPHLRGSRL_					0	0	0		ENST00000527763.5_1_11:829331-831706:+|nuORF	ENST00000527763.5_1_11:829331-831706:+|nuORF	ENST00000527763.5_1_11:829331-831706:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.3311157226562	2	546.330873	1090.64719	0.32552	0.00017784	-0.21425	-0.00011705	0.11127	6.0789E-05	546.3306648200428	14.912	0.33649	14.803	14.618	14.955	-0.10981					29	11	3	0	0	0	0.28225	1	880	880		11.495	0	1	353120			38662	11572	22558	22559	46715	46715					0.10549587025366236
RPHNLPVL	8	Unmodified	_RPHNLPVL_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;ENSG00000183628|ENST00000331444|DGCR6	nc|ENSG00000174227|Q5H8A4-3|PIGG;ENSG00000183628|ENST00000331444|DGCR6	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.77435302734375	2	473.285069	944.555585	0.16483	7.801E-05	0.0060886	2.8816E-06	0.17092	8.0892E-05	473.28490848243615	33.099	0.79894	33.154	32.814	33.613	0.055309					63	28	3	0	0	0	0.34131	1	6338	6338		12.532	2.3482	1	522690			38663	6780;7383	22559	22560	46716	46716					0.08108903608160745
RPHNLPVL	8	Unmodified	_RPHNLPVL_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;ENSG00000183628|ENST00000331444|DGCR6	nc|ENSG00000174227|Q5H8A4-3|PIGG;ENSG00000183628|ENST00000331444|DGCR6	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7740173339844	2	473.285069	944.555585	0.13552	6.4139E-05	0.2519	0.00011922	0.38742	0.00018336	473.28504081814503	33.145	0.71738	33.2	32.877	33.594	0.054375					60	25	3	0	0	0	0.33993	1	6336	6336		16.942	16.942	1	490870			38664	6780;7383	22559	22560	46717	46717					0.08108903608160745
RPHNLPVL	8	Unmodified	_RPHNLPVL_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;ENSG00000183628|ENST00000331444|DGCR6	nc|ENSG00000174227|Q5H8A4-3|PIGG;ENSG00000183628|ENST00000331444|DGCR6	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	473.285069	944.555585	0.0017092	8.0896E-07	0.24197	0.00011452	0.24368	0.00011533	473.28504805262173	33.186	0.80886	33.186	32.837	33.646	0	0.0062568	6.1658E-05	NaN	16.942	62	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	498390			38665	6780;7383	22559	22560							0.08108903608160745
RPHPAAMSATT	11	Unmodified	_RPHPAAMSATT_					0	0	0			REV__ENST00000458257.5_1_7:30791791-30791881:+|nuORF	REV__ENST00000458257.5_1_7:30791791-30791881:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2850341796875	2	570.28494	1138.55533	0.1639	9.3467E-05	-0.062751	-3.5786E-05	0.10114	5.7681E-05	570.2849471144883	16.972	0.7577	16.856	16.475	17.233	-0.11549					63	27	3	0	0	0	0.46475	1	1512	1512		2.7352	0.43246	1	353060	+		38666	21186	22560	22561	46718	46718					-0.008408841739992567
RPHPLPRPR	9	Unmodified	_RPHPLPRPR_					0	0	0			REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF	REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.2587890625	2	563.341241	1124.66793	0.26769	0.0001508	-0.63485	-0.00035764	-0.36717	-0.00020684	563.3412502069251	17.404	0.26125	17.344	17.241	17.502	-0.060429					12	8	2	0	0	0	0.26257	1	1660	1660		0.52476	0	1	21903	+		38667	19392	22561	22562	46719	46719					0.11058177405038805
RPHPVPPI	8	Unmodified	_RPHPVPPI_					0	0	0			REV__nc|ENSG00000099260|Q9NP74-3|PALMD	REV__nc|ENSG00000099260|Q9NP74-3|PALMD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7735290527344	2	456.774337	911.534121	-0.06635	-3.0307E-05	-2.2057	-0.0010075	-2.2721	-0.0010378	456.7733331163079	15.652	0.31504	15.542	15.408	15.723	-0.10981					27	10	4	0	0	0	0.4397	1	1105	1105		9.3474	0	1	79264	+		38668	14126	22562	22563	46720	46720					0.07481518579459134
RPHQARETL	9	Unmodified	_RPHQARETL_					0	0	0		ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3043823242188	2	554.304521	1106.59449	0.011183	6.1991E-06	-0.73032	-0.00040482	-0.71913	-0.00039862	554.3039770511566	13.999	0.51784	13.999	13.847	14.365	0					31	17	3	0	0	0	0.25112	1	590	590		16.149	3.1066	1	206990			38669	5199	22563	22564	46721	46721					0.04545584171910377
RPHQARETL	9	Unmodified	_RPHQARETL_					0	0	0		ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3041381835938	2	554.304521	1106.59449	-0.010755	-5.9613E-06	-0.6797	-0.00037676	-0.69045	-0.00038272	554.3040739423209	14.113	0.46336	14.008	13.845	14.308	-0.10466					32	15	3	0	0	0	0.2719	1	635	635		13.042	0	1	227810			38670	5199	22563	22564	46722	46722					0.04545584171910377
RPHQARETL	9	Unmodified	_RPHQARETL_					0	0	0		ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	ENSG00000155868|ENST00000286317|MED7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3045654296875	2	554.304521	1106.59449	-0.072049	-3.9937E-05	-0.61322	-0.00033991	-0.68527	-0.00037985	554.304111955833	14.07	0.51801	14.004	13.831	14.349	-0.066068					31	17	3	0	0	0	0.26278	1	614	614		14.405	5.0579	1	188230			38671	5199	22563	22564	46723	46723					0.04545584171910377
RPHRMFGSLL	10	Unmodified	_RPHRMFGSLL_					0	0	0			REV__ENSG00000137338|ENST00000682144|PGBD1	REV__ENSG00000137338|ENST00000682144|PGBD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5699462890625	3	405.225603	1212.65498	-0.20588	-8.3429E-05	0.25106	0.00010173	0.045174	1.8306E-05	405.226142531763	23.764	0.71225	23.692	23.285	23.997	-0.072559					39	24	3	0	0	0	0.32033	1	3437	3437		1.7423	0.28716	1	73928	+		38672	15856	22564	22565	46724	46724					0.0571597823063712
RPHSGLPGK	9	Unmodified	_RPHSGLPGK_					0	0	0		nc|ENSG00000026559|Q9UIX4-2|KCNG1;ENSG00000026559|ENST00000371571|KCNG1	nc|ENSG00000026559|Q9UIX4-2|KCNG1	nc|ENSG00000026559|Q9UIX4-2|KCNG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7720947265625	2	474.772326	947.530098	-0.057844	-2.7463E-05	-0.018454	-8.7617E-06	-0.076298	-3.6224E-05	474.7721870496781	16.004	1.4753	16.004	15.072	16.548	0					155	51	4	0	0	0	0.2719	1	1071	1071		13.042	2.9685	1	899750			38673	538	22565	22566	46725	46725					0.05423429085760745
RPHSGLPGK	9	Unmodified	_RPHSGLPGK_					0	0	0		nc|ENSG00000026559|Q9UIX4-2|KCNG1;ENSG00000026559|ENST00000371571|KCNG1	nc|ENSG00000026559|Q9UIX4-2|KCNG1	nc|ENSG00000026559|Q9UIX4-2|KCNG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.7724304199219	2	474.772326	947.530098	0.083562	3.9673E-05	-0.1262	-5.9916E-05	-0.042637	-2.0243E-05	474.77216437483173	16.062	1.4579	16	15.16	16.617	-0.062533					145	49	4	0	0	0	0.2719	1	1319	1319		13.042	2.9685	1	958580			38674	538	22565	22566	46726	46726					0.05423429085760745
RPHTQAHGGRW	11	Unmodified	_RPHTQAHGGRW_					0	0	0		ENST00000325643.5_1_9:90499938-90500478:+|nuORF	ENST00000325643.5_1_9:90499938-90500478:+|nuORF	ENST00000325643.5_1_9:90499938-90500478:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8822937011719	3	434.890271	1301.64898	-0.056531	-2.4585E-05	-3.4346	-0.0014937	-3.4911	-0.0015183	435.22230492511505	17.318	0.67821	17.257	16.971	17.65	-0.060429					29	23	2	0	0	0	0.47545	1	1665	1665		1.3296	0.11481	1	41987			38675	9409	22566	22567	46727	46727					0.010225960433217551
RPHTVLTVI	9	Unmodified	_RPHTVLTVI_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.31884765625	2	518.319109	1034.62366	0.070036	3.6301E-05	-0.33015	-0.00017112	-0.26012	-0.00013482	518.3188687234394	39.666	0.81021	39.666	39.268	40.078	0					62	29	3	0	0	0	0.074552	3	8374	8374;8421;8451		43.772	16.144	1	718790			38676	7399	22567	22568	46728;46729;46730	46728					0.10773728468166155
RPHTVLTVI	9	Unmodified	_RPHTVLTVI_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.319091796875	2	518.319109	1034.62366	0.28681	0.00014866	-0.42524	-0.00022041	-0.13843	-7.175E-05	518.3187356909862	39.557	0.83907	39.649	39.251	40.09	0.09267					58	29	3	0	0	0	0.069366	2	8388	8336;8388		45.7	16.618	1	705530			38677	7399	22567	22568	46731;46732	46732					0.10773728468166155
RPHTVLTVI	9	Unmodified	_RPHTVLTVI_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3184814453125	2	518.319109	1034.62366	0.2907	0.00015067	-0.48171	-0.00024968	-0.19101	-9.9005E-05	518.3187030520531	39.518	0.71465	39.618	39.262	39.977	0.099407					55	24	3	0	0	0	0.069366	2	8372	8322;8372		45.7	16.618	1	840180			38678	7399	22567	22568	46733;46734	46734					0.10773728468166155
RPHYGSVL	8	Unmodified	_RPHYGSVL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7535095214844	2	464.753601	927.49265	-0.094084	-4.3726E-05	0.048071	2.2341E-05	-0.046012	-2.1384E-05	464.75350652505426	26.802	0.79568	26.802	26.499	27.294	0					62	27	3	0	0	0	0.11046	1	4473	4473		58.679	30.192	1	877940			38679	4321	22568	22569	46735	46735					0.026003378201380656
RPHYGSVL	8	Unmodified	_RPHYGSVL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.75347900390625	2	464.753601	927.49265	-0.039432	-1.8326E-05	-0.048319	-2.2456E-05	-0.087751	-4.0782E-05	464.7534507535386	26.795	0.8423	26.773	26.506	27.349	-0.021412					67	29	3	0	0	0	0.064917	1	4481	4481		71.134	35.089	1	983000			38680	4321	22568	22569	46736	46736					0.026003378201380656
RPHYGSVL	8	Unmodified	_RPHYGSVL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7533874511719	2	464.753601	927.49265	0.29468	0.00013695	-0.41412	-0.00019246	-0.11944	-5.551E-05	464.7532460413429	26.858	0.86628	26.846	26.541	27.407	-0.011562					75	30	3	0	0	0	0.035151	2	4494	4494;4548		85.272	43.177	1	894100			38681	4321	22568	22569	46737;46738	46737					0.026003378201380656
RPIAILPISV	10	Unmodified	_RPIAILPISV_					0	0	0		ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8002319335938	2	539.852784	1077.69102	0.28997	0.00015654	0.20616	0.0001113	0.49614	0.00026784	539.8529495202881	69.501	0.55806	69.501	69.257	69.815	0					35	19	2	0	0	0	0.31745	1	17631	17631		8.7454	0	1	220620			38682	7052	22569	22570	46739	46739					0.15527758679127146
RPIAILPISV	10	Unmodified	_RPIAILPISV_					0	0	0		ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	ENSG00000178401|ENST00000549441|DNAJC22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8001708984375	2	539.852784	1077.69102	0.35425	0.00019124	-0.020276	-1.0946E-05	0.33397	0.0001803	539.8529275035423	69.408	0.65208	69.474	69.258	69.91	0.066048					34	22	2	0	0	0	0.31581	1	17602	17602		11.495	2.7493	1	283850			38683	7052	22569	22570	46740	46740					0.15527758679127146
RPIEVFRRE	9	Unmodified	_RPIEVFRRE_					0	0	0			REV__ENST00000532915.1_1_11:62538888-62545815:+|nuORF	REV__ENST00000532915.1_1_11:62538888-62545815:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.3428344726562	2	601.343646	1200.67274	-0.91739	-0.00055167	0.14151	8.5095E-05	-0.77588	-0.00046657	601.3436391940309	34.952	0.73949	34.952	34.672	35.412	0					71	26	4	0	0	0	0.30064	1	7017	7017		8.7454	1.6437	1	995600	+		38684	16967	22570	22571	46741	46741					0.08043016757142141
RPIFEPSL	8	Unmodified	_RPIFEPSL_					0	0	0			REV__ENSG00000115364|ENST00000393909|MRPL19	REV__ENSG00000115364|ENST00000393909|MRPL19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.3207702636719	2	479.77146	957.528367	0.42385	0.00020335	-1.2207	-0.00058564	-0.79681	-0.00038229	479.77113241065035	53.983	0.64572	53.983	53.595	54.24	0					35	23	2	0	0	0	0.34167	1	12686	12686		11.64	0	1	264780	+		38685	14875	22571	22572	46742	46742					0.04790375277127623
RPIFPGKHYL	10	Unmodified	_RPIFPGKHYL_					0	0	0		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.9048156738281	3	409.904747	1226.69241	0.060769	2.491E-05	0.3406	0.00013961	0.40137	0.00016452	409.9049775293705	35.93	2.1501	35.93	35.466	37.616	0					253	77	5	0	0	0	0.050002	6	7222	7172;7222;7376;7425;7466;7478		59.013	39.869	1	10420000			38686	1520	22572	22573	46743;46744;46745;46746;46747;46748	46744					0.08813392767910955
RPIFPGKHYL	10	Unmodified	_RPIFPGKHYL_					0	0	0		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.3539428710938	2	614.353483	1226.69241	0.33728	0.00020721	0.3016	0.00018529	0.63888	0.0003925	614.3535184984427	35.905	0.8427	35.905	35.604	36.447	0					70	30	3	0	0	0	0.11678	2	7242	7242;7291		51.63	51.63	1	519230			38687	1520	22572	22573	46749;46750	46749					0.08813392767910955
RPIFPGKHYL	10	Unmodified	_RPIFPGKHYL_					0	0	0		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.90478515625	3	409.904747	1226.69241	0.21475	8.8028E-05	0.16959	6.9516E-05	0.38434	0.00015754	409.90491773832207	35.808	2.1397	35.891	35.461	37.6	0.082355					229	77	5	0	0	0	0.024627	5	7178	7133;7178;7226;7335;7618		66.683	47.321	1	10301000			38688	1520	22572	22573	46751;46752;46753;46754;46755	46752					0.08813392767910955
RPIFPGKHYL	10	Unmodified	_RPIFPGKHYL_					0	0	0		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.9052429199219	3	409.904747	1226.69241	0.22113	9.0644E-05	0.20557	8.4265E-05	0.42671	0.00017491	409.90493665826693	35.785	2.1487	35.871	35.317	37.465	0.086246					244	77	5	0	0	0	0.015119	6	7221	7124;7174;7221;7309;7356;7417		77.049	56.177	1	10464000			38689	1520	22572	22573	46756;46757;46758;46759;46760;46761	46758					0.08813392767910955
RPIFPGKHYL	10	Unmodified	_RPIFPGKHYL_					0	0	0		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	614.353483	1226.69241	0.31855	0.0001957	0.076035	4.6713E-05	0.39459	0.00024242	614.3534615387014	35.816	0.73807	35.898	35.624	36.362	0.082359	0.0062975	-5.7494E-05	NaN	51.63	63	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535800			38690	1520	22572	22573							0.08813392767910955
RPIFPGKHYL	10	Unmodified	_RPIFPGKHYL_					0	0	0		nc|ENSG00000100030|P28482-2|MAPK1;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	614.353483	1226.69241	0.35344	0.00021714	0.054679	3.3592E-05	0.40812	0.00025073	614.3534123982163	35.786	0.9403	35.872	35.62	36.561	0.08625	-0.019541	-8.3735E-05	NaN	51.63	74	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	521510			38691	1520	22572	22573							0.08813392767910955
RPIHHPLVL	9	Unmodified	_RPIHHPLVL_					0	0	0		ENSG00000165805|ENST00000298699|C12orf50	ENSG00000165805|ENST00000298699|C12orf50	ENSG00000165805|ENST00000298699|C12orf50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2993774414062	2	541.335093	1080.65563	0.52213	0.00028265	-0.44675	-0.00024184	0.075382	4.0807E-05	541.3348131082147	29.297	0.3709	29.309	29.161	29.532	0.012266					23	12	2	0	0	0	0.25622	1	5283	5283		7.2892	0	1	131200			38692	6002	22573	22574	46762	46762					0.118531409419802
RPIILLDSL	9	Unmodified	_RPIILLDSL_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2965087890625	2	520.329142	1038.64373	0.42101	0.00021906	2.9571	0.0015387	3.3781	0.0017577	520.3313975906171	67.894	0.6554	67.894	67.673	68.329	0					38	23	2	0	0	0	0.15943	1	17104	17104		39.95	9.3132	1	363820			38693	6837	22574	22575	46763	46763					0.12595479408128085
RPIILLDSL	9	Unmodified	_RPIILLDSL_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.296875	2	520.329142	1038.64373	0.46809	0.00024356	3.6766	0.0019131	4.1447	0.0021566	520.3318963798769	67.798	1.0828	67.876	67.434	68.517	0.078041					61	38	3	0	0	0	0.08298	1	17069	17069		51.63	11.68	1	342440			38694	6837	22574	22575	46764	46764					0.12595479408128085
RPIKLSWT	8	Unmodified	_RPIKLSWT_					0	0	0			REV__ENST00000517309.5_1_8:97273991-97274045:+|nuORF	REV__ENST00000517309.5_1_8:97273991-97274045:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8107604980469	2	500.800552	999.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.608	1	21.508	21.008	22.008	-0.10034								0	0	0	0.37183	1	2895	2895		4.756	0	1		+		38695	21850	22575	22576	46765	46765					0.08674056922416185
RPIKTATTL	9	Unmodified	_RPIKTATTL_					0	0	0		ENSG00000136770|ENST00000376980|DNAJC1	ENSG00000136770|ENST00000376980|DNAJC1	ENSG00000136770|ENST00000376980|DNAJC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8111877441406	2	500.811116	999.60768	0.37624	0.00018843	-0.17419	-8.7237E-05	0.20205	0.00010119	500.81102860929036	21.594	0.55972	21.594	21.31	21.87	0					44	19	3	0	0	0	0.15763	1	2907	2907		29.841	16.798	1	188680			38696	3995	22576	22577	46766	46766					0.10786022231263814
RPIKTATTL	9	Unmodified	_RPIKTATTL_					0	0	0		ENSG00000136770|ENST00000376980|DNAJC1	ENSG00000136770|ENST00000376980|DNAJC1	ENSG00000136770|ENST00000376980|DNAJC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.81134033203125	2	500.811116	999.60768	0.4424	0.00022156	-0.1404	-7.0313E-05	0.302	0.00015125	500.81107120710254	21.706	0.57952	21.606	21.338	21.917	-0.10034					38	20	3	0	0	0	0.19905	1	2939	2939		23.79	10.747	1	214390			38697	3995	22576	22577	46767	46767					0.10786022231263814
RPIKTATTL	9	Unmodified	_RPIKTATTL_					0	0	0		ENSG00000136770|ENST00000376980|DNAJC1	ENSG00000136770|ENST00000376980|DNAJC1	ENSG00000136770|ENST00000376980|DNAJC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.81109619140625	2	500.811116	999.60768	0.31578	0.00015815	0.045186	2.2629E-05	0.36096	0.00018077	500.8111006112984	21.649	0.53696	21.6	21.344	21.881	-0.049377					41	18	3	0	0	0	0.13296	2	2889	2889;2939		33.445	10.709	1	208350			38698	3995	22576	22577	46768;46769	46768					0.10786022231263814
RPILTIITL	9	Unmodified	_RPILTIITL_					0	0	0		nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;nc|ENSG00000141510|P04637-4|TP53;ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-8|TP53;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-7|TP53	nc|ENSG00000141510|P04637-5|TP53	nc|ENSG00000141510|P04637-5|TP53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3472900390625	2	520.347335	1038.68012	0.48924	0.00025458	-0.7226	-0.000376	-0.23335	-0.00012143	520.3470748730383	71.873	2.2778	71.873	71.55	73.828	0					213	82	5	0	0	0	0.0016712	5	18294	18244;18294;18343;18426;18479		114.2	28.56	1	15966000			38699	4388	22577	22578	46770;46771;46772;46773;46774	46771					0.1623235630486306
RPILTIITL	9	Unmodified	_RPILTIITL_					0	0	0		nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;nc|ENSG00000141510|P04637-4|TP53;ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-8|TP53;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-7|TP53	nc|ENSG00000141510|P04637-5|TP53	nc|ENSG00000141510|P04637-5|TP53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.347412109375	2	520.347335	1038.68012	0.44065	0.00022929	-0.65005	-0.00033825	-0.2094	-0.00010896	520.347149225072	71.849	1.9906	71.906	71.537	73.528	0.056572					207	72	5	0	0	0	0.00078391	5	18314	18272;18314;18355;18405;18456		125.53	39.888	1	16718000			38700	4388	22577	22578	46775;46776;46777;46778;46779	46776					0.1623235630486306
RPILTIITL	9	Unmodified	_RPILTIITL_					0	0	0		nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;nc|ENSG00000141510|P04637-4|TP53;ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-8|TP53;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-7|TP53	nc|ENSG00000141510|P04637-5|TP53	nc|ENSG00000141510|P04637-5|TP53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.347412109375	2	520.347335	1038.68012	0.45495	0.00023673	-0.4765	-0.00024795	-0.021547	-1.1212E-05	520.3471676767073	71.914	2.1497	71.887	71.57	73.72	-0.027275					197	77	5	0	0	0	0.0016712	4	18294	18294;18345;18396;18452		114.2	25.248	1	13678000			38701	4388	22577	22578	46780;46781;46782;46783	46780					0.1623235630486306
RPINKKFLSL	10	Unmodified	_RPINKKFLSL_					0	0	0		ENST00000377811.3_1_X:47004160-47004361:-|nuORF	ENST00000377811.3_1_X:47004160-47004361:-|nuORF	ENST00000377811.3_1_X:47004160-47004361:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.56793212890625	3	405.923919	1214.74993	0.020539	8.3374E-06	0.09738	3.9529E-05	0.11792	4.7866E-05	405.9239311638001	35.665	0.65303	35.665	35.439	36.093	0					35	23	2	0	0	0	0.31068	1	7157	7157		12.228	3.4758	1	266370			38702	9945	22578	22579	46784	46784					0.15114234973452767
RPINKKFLSL	10	Unmodified	_RPINKKFLSL_					0	0	0		ENST00000377811.3_1_X:47004160-47004361:-|nuORF	ENST00000377811.3_1_X:47004160-47004361:-|nuORF	ENST00000377811.3_1_X:47004160-47004361:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5679016113281	3	405.923919	1214.74993	-0.047861	-1.9428E-05	-0.27376	-0.00011113	-0.32162	-0.00013055	405.9238521274949	35.497	0.624	35.578	35.383	36.007	0.081043					46	22	3	0	0	0	0.31178	1	7101	7101		18.721	5.2026	1	393450			38703	9945	22578	22579	46785	46785					0.15114234973452767
RPINKKFLSL	10	Unmodified	_RPINKKFLSL_					0	0	0		ENST00000377811.3_1_X:47004160-47004361:-|nuORF	ENST00000377811.3_1_X:47004160-47004361:-|nuORF	ENST00000377811.3_1_X:47004160-47004361:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.56793212890625	3	405.923919	1214.74993	-0.25522	-0.0001036	0.26192	0.00010632	0.0066966	2.7183E-06	405.92409357046904	35.49	0.63586	35.576	35.399	36.034	0.08625					33	22	2	0	0	0	0.31609	1	7122	7122		9.2438	0.49199	1	280130			38704	9945	22578	22579	46786	46786					0.15114234973452767
RPINRIENSL	10	Unmodified	_RPINRIENSL_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5667724609375	3	404.566683	1210.67822	-0.092807	-3.7547E-05	0.22372	9.0509E-05	0.13091	5.2963E-05	404.56684809810605	29.769	0.78572	29.781	29.417	30.202	0.012264					79	26	4	0	0	0	0.3258	1	5381	5381		10.899	2.1472	1	350900	+		38705	19088	22579	22580	46787	46787					0.0813069554892536
RPINRRQSRRF	11	Unmodified	_RPINRRQSRRF_					0	0	0		ENST00000436397.5_2_19:52901831-52904968:+|nuORF	ENST00000436397.5_2_19:52901831-52904968:+|nuORF	ENST00000436397.5_2_19:52901831-52904968:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.9589538574219	3	495.958908	1484.85489	0.3017	0.00014963	-0.13055	-6.4746E-05	0.17116	8.4886E-05	495.95879638391847	93.351	1.4786	93.351	92.57	94.048	0					465	121	4	0	0	0	0.48173	2	24808	24808;24845		0.50596	0.50596	1	2291900			38706	10523	22580	22581	46788;46789	46788					0.1318616922255842
RPIPSPPAV	9	Unmodified	_RPIPSPPAV_					0	0	0			REV__nc|ENSG00000160282|O95954-2|FTCD	REV__nc|ENSG00000160282|O95954-2|FTCD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7815856933594	2	467.279452	932.544351	0.10959	5.1207E-05	-0.098754	-4.6146E-05	0.010831	5.0612E-06	467.279357902058	35.879	1.1371	35.879	35.17	36.307	0					74	41	3	0	0	0	0.19747	1	7150	7150		24.021	0	1	378850	+		38707	23051	22581	22582	46790	46790					0.07538081514030637
RPIQGVFMKI	10	Unmodified	_RPIQGVFMKI_					0	0	0			REV__nc|ENSG00000048740|O95319-5|CELF2	REV__nc|ENSG00000048740|O95319-5|CELF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.29296875	2	594.849719	1187.68488	0.61289	0.00036458	2.1265	0.001265	2.7394	0.0016295	594.8509006826148	29.723	0.41912	29.723	29.551	29.97	0					20	14	2	0	0	0	0.32054	1	5365	5365		3.2813	0.78282	1	80196	+		38708	13552	22582	22583	46791	46791					0.09854917175971423
RPIRIPKELI	10	Unmodified	_RPIRIPKELI_					0	0	0			REV__ENST00000505322.5_1_1:2100378-2116445:+|nuORF	REV__ENST00000505322.5_1_1:2100378-2116445:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.91162109375	3	412.271319	1233.79213	-0.40644	-0.00016756	0.6893	0.00028418	0.28287	0.00011662	412.6063097898158	34.567	0.16958	34.645	34.505	34.675	0.077377					10	5	2	0	0	0	0.3213	1	6799	6799		1.9064	0.83491	1	40357	+		38709	21739	22583	22584	46792	46792					0.18458210381845674
RPIRIQQRF	9	Unmodified	_RPIRIQQRF_					0	0	0		nc|ENSG00000285188|Q08493|PDE4C	nc|ENSG00000285188|Q08493|PDE4C	nc|ENSG00000285188|Q08493|PDE4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5255126953125	3	405.247396	1212.72036	-0.45203	-0.00018318	-0.32775	-0.00013282	-0.77977	-0.000316	405.24710032362367	18.632	0.27862	18.574	18.402	18.681	-0.058174					19	9	3	0	0	0	0.25992	1	1986	1986		4.5289	2.9366	1	51474			38710	13002	22584	22585	46793	46793					0.12250715747973118
RPIRQILYL	9	Unmodified	_RPIRQILYL_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3692626953125	2	586.369133	1170.72371	0.50112	0.00029384	-0.10172	-5.9648E-05	0.3994	0.00023419	586.3690849826884	48.48	1.4403	48.48	48.131	49.572	0					145	51	5	0	0	0	0.0037552	4	11101	11052;11101;11151;11193		96.285	72.264	1	8565000			38711	7093	22585	22586	46794;46795;46796;46797	46795					0.1451796580199698
RPIRQILYL	9	Unmodified	_RPIRQILYL_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3694458007812	2	586.369133	1170.72371	0.5943	0.00034848	-0.13487	-7.9083E-05	0.45943	0.0002694	586.36905188417	48.485	1.4904	48.533	48.181	49.672	0.047523					153	54	4	0	0	0	0.006189	4	11092	11048;11092;11144;11195		85.272	59.873	1	8522600			38712	7093	22585	22586	46798;46799;46800;46801	46799					0.1451796580199698
RPIRQILYL	9	Unmodified	_RPIRQILYL_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3695068359375	2	586.369133	1170.72371	0.51781	0.00030363	-0.071006	-4.1636E-05	0.44681	0.00026199	586.3690832394439	48.424	1.5469	48.467	48.145	49.692	0.043324					156	56	5	0	0	0	0.0037552	4	11070	11023;11070;11120;11177		96.285	69.401	1	9001800			38713	7093	22585	22586	46802;46803;46804;46805	46803					0.1451796580199698
RPISDFLTL	9	Unmodified	_RPISDFLTL_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.30322265625	2	531.303124	1060.5917	0.46137	0.00024513	-0.0092844	-4.9328E-06	0.45209	0.0002402	531.3030513428139	67.061	0.87922	67.061	66.744	67.623	0					74	30	4	0	0	0	0.0098873	2	16848	16799;16848		79.596	35.738	1	1724800			38714	6320	22586	22587	46806;46807	46807					0.06382315994369492
RPISDFLTL	9	Unmodified	_RPISDFLTL_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.30322265625	2	531.303124	1060.5917	0.33551	0.00017825	-0.047694	-2.534E-05	0.28781	0.00015291	531.3031312880585	66.986	0.95473	67.07	66.738	67.693	0.083832					71	33	3	0	0	0	0.013404	2	16795	16753;16795		74.2	34.25	1	1621700			38715	6320	22586	22587	46808;46809	46809					0.06382315994369492
RPISDFLTL	9	Unmodified	_RPISDFLTL_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3032836914062	2	531.303124	1060.5917	0.28892	0.00015351	-0.0063021	-3.3483E-06	0.28262	0.00015016	531.3031412009042	67.072	0.74419	67.055	66.762	67.506	-0.016296					61	25	3	0	0	0	0.032589	2	16846	16799;16846		59.368	23.241	1	1636100			38716	6320	22586	22587	46810;46811	46811					0.06382315994369492
RPISGQKEV	9	Unmodified	_RPISGQKEV_					0	0	0		ENST00000585749.5_1_17:26976009-26989084:-|nuORF;ENSG00000132581|ENST00000247020|SDF2	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.31976318359375	2	507.290548	1012.56654	0.018389	9.3287E-06	0.17791	9.0254E-05	0.1963	9.9583E-05	507.29053595854685	14.733	0.41917	14.733	14.561	14.981	0					27	14	2	0	0	0	0.25123	1	799	799		12.241	5.5175	1	83164			38717	3650	22587	22588	46812	46812					0.06076261191810772
RPISGQKEV	9	Unmodified	_RPISGQKEV_					0	0	0		ENST00000585749.5_1_17:26976009-26989084:-|nuORF;ENSG00000132581|ENST00000247020|SDF2	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.290771484375	2	507.290548	1012.56654	0.034833	1.7671E-05	-0.58317	-0.00029584	-0.54834	-0.00027817	507.2905398425678	14.841	0.55439	14.732	14.484	15.038	-0.10981					42	19	4	0	0	0	0.28225	1	869	869		11.495	0	1	84033			38718	3650	22587	22588	46813	46813					0.06076261191810772
RPISGQKEV	9	Unmodified	_RPISGQKEV_					0	0	0		ENST00000585749.5_1_17:26976009-26989084:-|nuORF;ENSG00000132581|ENST00000247020|SDF2	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	ENST00000585749.5_1_17:26976009-26989084:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2903747558594	2	507.290548	1012.56654	-0.018161	-9.2127E-06	0.11263	5.7138E-05	0.094474	4.7926E-05	507.29081796926425	14.851	0.45157	14.786	14.589	15.041	-0.064413					33	15	3	0	0	0	0.25123	1	870	870		12.241	4.3305	1	88500			38719	3650	22587	22588	46814	46814					0.06076261191810772
RPITDSPVL	9	Unmodified	_RPITDSPVL_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2879943847656	2	499.287474	996.560395	0.29969	0.00014963	-0.99054	-0.00049457	-0.69086	-0.00034494	499.28696362103057	41.533	0.56087	41.533	41.225	41.786	0					36	23	2	0	0	0	0.0079761	4	8979	8954;8979;8994;9034		82.529	38.671	1	2483900			38720	588	22588	22589	46815;46816;46817;46818	46816					0.061977429602734446
RPITDSPVL	9	Unmodified	_RPITDSPVL_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2872314453125	2	499.287474	996.560395	0.27434	0.00013697	-0.86636	-0.00043256	-0.59202	-0.00029559	499.2869806874078	41.576	0.55014	41.666	41.188	41.738	0.090252					37	22	2	0	0	0	0.011693	2	8936	8936;8942		76.825	32.966	1	2667500			38721	588	22588	22589	46819;46820	46819					0.061977429602734446
RPITDSPVL	9	Unmodified	_RPITDSPVL_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2868957519531	2	499.287474	996.560395	0.43316	0.00021627	-1.1095	-0.00055394	-0.6763	-0.00033767	499.28673082222616	41.389	0.53765	41.485	41.148	41.686	0.096626					39	20	3	0	0	0	0.018449	1	8904	8904		66.457	24.617	1	2037400			38722	588	22588	22589	46821	46821					0.061977429602734446
RPITERSLL	9	Unmodified	_RPITERSLL_					0	0	0		nc|ENSG00000171055|Q9UHY8-2|FEZ2;ENSG00000171055|ENST00000405912|FEZ2	nc|ENSG00000171055|Q9UHY8-2|FEZ2	nc|ENSG00000171055|Q9UHY8-2|FEZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8277587890625	2	542.827298	1083.64004	0.76871	0.00041728	-0.25879	-0.00014048	0.50991	0.0002768	542.8273948122333	34.049	0.58087	34.049	33.808	34.388	0					52	20	3	0	0	0	0.048637	1	6697	6697		53.404	7.6641	1	829090			38723	6507	22589	22590	46822	46822					0.10156809634281672
RPITERSLL	9	Unmodified	_RPITERSLL_					0	0	0		nc|ENSG00000171055|Q9UHY8-2|FEZ2;ENSG00000171055|ENST00000405912|FEZ2	nc|ENSG00000171055|Q9UHY8-2|FEZ2	nc|ENSG00000171055|Q9UHY8-2|FEZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8278198242188	2	542.827298	1083.64004	0.44545	0.0002418	0.26552	0.00014413	0.71097	0.00038594	542.8275821506882	33.902	0.64066	33.969	33.685	34.326	0.066704					55	22	3	0	0	0	0.048637	1	6637	6637		53.404	7.6641	1	997110			38724	6507	22589	22590	46823	46823					0.10156809634281672
RPITVSYAF	9	Unmodified	_RPITVSYAF_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2905883789062	2	527.290017	1052.56548	0.47679	0.00025141	0.27013	0.00014244	0.74692	0.00039384	527.2902850027666	52.109	1.1227	52.109	51.809	52.932	0					60	40	2	0	0	0	0.015924	1	12220	12220		70.332	32.358	1	1148200			38725	4504	22590	22591	46824	46824					0.04130046822888289
RPITVSYAF	9	Unmodified	_RPITVSYAF_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2903442382812	2	527.290017	1052.56548	0.46897	0.00024728	-0.084206	-4.4401E-05	0.38476	0.00020288	527.2902110797512	52.019	0.8652	52.07	51.846	52.711	0.050575					59	31	3	0	0	0	0.026579	1	12231	12231		61.602	36.203	1	1212800			38726	4504	22590	22591	46825	46825					0.04130046822888289
RPITVSYAF	9	Unmodified	_RPITVSYAF_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.290283203125	2	527.290017	1052.56548	0.32618	0.00017199	0.21761	0.00011475	0.54379	0.00028674	527.2903011856171	52.234	1.0565	52.233	51.928	52.985	-0.00080872					68	38	3	0	0	0	0.058995	3	12280	12280;12338;12357		49.554	18.918	1	1322300			38727	4504	22590	22591	46826;46827;46828	46826					0.04130046822888289
RPIYALVNL	9	Unmodified	_RPIYALVNL_					0	0	0		ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF	ENSG00000169189|ENST00000361439|NSMCE1	ENSG00000169189|ENST00000361439|NSMCE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.8218383789062	2	529.821484	1057.62842	0.71434	0.00037847	0.81213	0.00043029	1.5265	0.00080876	529.8215459586107	63.99	0.62094	63.99	63.695	64.316	0					46	22	3	0	0	0	0.023967	1	15875	15875		62.573	13.018	1	720530			38728	6335	22591	22592	46829	46829					0.10190612610949756
RPIYIKDYVTL	11	Unmodified	_RPIYIKDYVTL_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103553216-103586042:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.93408203125	3	460.934372	1379.78129	0.17559	8.0937E-05	-0.82116	-0.0003785	-0.64557	-0.00029757	460.9339330564096	55.561	0.43015	55.542	55.319	55.75	-0.019077					34	15	3	0	0	0	0.35173	1	13287	13287		17.572	10.535	1	504040			38729	2249	22592	22593	46830	46830					0.10658763216883926
RPIYIKDYVTL	11	Unmodified	_RPIYIKDYVTL_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103553216-103586042:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	460.934372	1379.78129	-0.016048	-7.3971E-06	-0.76997	-0.0003549	-0.78601	-0.0003623	460.9340462272835	55.351	0.50617	55.351	55.088	55.594	0	-0.054251	0.00025549	NaN	17.572	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361870			38730	2249	22592	22593							0.10658763216883926
RPIYIKDYVTL	11	Unmodified	_RPIYIKDYVTL_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103553216-103586042:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	460.934372	1379.78129	0.29485	0.00013591	-1.3024	-0.00060034	-1.0076	-0.00046443	460.93384805129983	55.252	0.62009	55.323	55.055	55.675	0.070885	-0.08206	-0.00048081	NaN	17.572	42	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352180			38731	2249	22592	22593							0.10658763216883926
RPIYLTNTF	9	Unmodified	_RPIYLTNTF_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3272705078125	2	562.808574	1123.60259	0.59544	0.00033512	0.61964	0.00034874	1.2151	0.00068386	562.808264150936	52.805	0.083305	52.855	52.794	52.878	0.050575					4	2	2	0	0	0	0.26612	1	12423	12423		13.906	3.8321	1	102260			38732	1049	22593	22594	46831	46831					0.04573718368646951
RPIYLTNTF	9	Unmodified	_RPIYLTNTF_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	562.808574	1123.60259	0.36586	0.00020591	-1.2848	-0.00072308	-0.9189	-0.00051717	562.8074053185402	53.218	0.13805	53.218	53.121	53.259	0	0.18122	-0.00032968	NaN	13.906	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123500			38733	1049	22593	22594							0.04573718368646951
RPIYPVEEL	9	Unmodified	_RPIYPVEEL_					0	0	0		ENSG00000114446|ENST00000264538|IFT57;ENST00000465024.1_1_3:107932768-107941190:-|nuORF	ENSG00000114446|ENST00000264538|IFT57	ENSG00000114446|ENST00000264538|IFT57	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.8236694335938	2	558.308406	1114.60226	0.29238	0.00016324	-0.1535	-8.5702E-05	0.13888	7.7537E-05	558.3080473380819	52.299	0.42072	52.299	52.074	52.494	0					30	14	3	0	0	0	0.047483	3	12221	12215;12221;12278		53.833	53.833	1	401520			38734	2566	22594	22595	46832;46833;46834	46833					0.04954298648817712
RPIYPVEEL	9	Unmodified	_RPIYPVEEL_					0	0	0		ENSG00000114446|ENST00000264538|IFT57;ENST00000465024.1_1_3:107932768-107941190:-|nuORF	ENSG00000114446|ENST00000264538|IFT57	ENSG00000114446|ENST00000264538|IFT57	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8238525390625	2	558.308406	1114.60226	0.35945	0.00020068	-0.45004	-0.00025126	-0.090592	-5.0578E-05	558.3080238954823	52.228	0.40417	52.278	51.985	52.389	0.050575					22	14	2	0	0	0	0.069366	1	12207	12207		45.7	15.063	1	515960			38735	2566	22594	22595	46835	46835					0.04954298648817712
RPIYPVEEL	9	Unmodified	_RPIYPVEEL_					0	0	0		ENSG00000114446|ENST00000264538|IFT57;ENST00000465024.1_1_3:107932768-107941190:-|nuORF	ENSG00000114446|ENST00000264538|IFT57	ENSG00000114446|ENST00000264538|IFT57	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.8236083984375	2	558.308406	1114.60226	0.10238	5.7158E-05	0.055961	3.1244E-05	0.15834	8.8402E-05	558.3081560464785	52.395	0.6288	52.394	52.034	52.663	-0.00080872					32	22	3	0	0	0	0.047483	1	12278	12278		53.833	53.833	1	333250			38736	2566	22594	22595	46836	46836					0.04954298648817712
RPIYPVEEL	9	Unmodified	_RPIYPVEEL_					0	0	0		ENSG00000114446|ENST00000264538|IFT57;ENST00000465024.1_1_3:107932768-107941190:-|nuORF	ENSG00000114446|ENST00000264538|IFT57	ENSG00000114446|ENST00000264538|IFT57	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	558.308406	1114.60226	0.10238	5.7158E-05	0.055961	3.1244E-05	0.15834	8.8402E-05	558.3081560464785	52.395	0.6288	52.394	52.034	52.663	-0.00080872	0.070725	0.00033118	NaN	53.833	32	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333250			38737	2566	22594	22595							0.04954298648817712
RPKAKRKEEP	10	Unmodified	_RPKAKRKEEP_					0	0	0		ENSG00000133997|ENST00000256379|MED6;nc|ENSG00000133997|O75586-2|MED6	ENSG00000133997|ENST00000256379|MED6	ENSG00000133997|ENST00000256379|MED6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8684692382812	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.23	1	116.2	115.7	116.7	-0.022781								0	0	0	0.38126	1	30114	30114		1.6526	0.17072	1				38738	3744	22595	22596	46837	46837					0.11614974819940471
RPKAPEIK	8	Unmodified	_RPKAPEIK_					0	0	0		ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	ENSG00000248713|ENST00000511828|C4orf54	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7680969238281	2	469.792727	937.5709	-0.24218	-0.00011377	-1.772	-0.00083246	-2.0142	-0.00094624	469.79155454752834	14.862	0.27361	14.862	14.676	14.949	0					16	9	2	0	0	0	0.34408	1	876	876		2.3027	0	1	65370			38739	8582	22596	22597	46838	46838					0.09961770405357129
RPKAQPTTL	9	Unmodified	_RPKAQPTTL_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3007507324219	2	506.300916	1010.58728	0.24556	0.00012433	-0.36589	-0.00018525	-0.12034	-6.0927E-05	506.3006655823323	17.764	0.6214	17.764	17.537	18.158	0					44	20	3	0	0	0	0.07944	1	1706	1706		41.956	24.843	1	293790			38740	5470	22597	22598	46839	46839					0.08240851571463281
RPKAQPTTL	9	Unmodified	_RPKAQPTTL_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.3012390136719	2	506.300916	1010.58728	0.10328	5.2291E-05	-0.90135	-0.00045636	-0.79807	-0.00040406	506.30006667986726	17.911	0.79466	17.793	17.323	18.117	-0.11739					53	27	3	0	0	0	0.12279	1	1763	1763		34.932	12.196	1	297680			38741	5470	22597	22598	46840	46840					0.08240851571463281
RPKAQPTTL	9	Unmodified	_RPKAQPTTL_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.3008728027344	2	506.300916	1010.58728	0.13568	6.8694E-05	-0.18036	-9.1314E-05	-0.044679	-2.2621E-05	506.30073283250886	17.936	0.66459	17.875	17.618	18.283	-0.060429					56	23	3	0	0	0	0.15763	1	1753	1753		29.841	11.694	1	295140			38742	5470	22597	22598	46841	46841					0.08240851571463281
RPKDPNNLL	9	Unmodified	_RPKDPNNLL_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.80419921875	2	533.803823	1065.59309	0.41337	0.00022066	0.32425	0.00017308	0.73762	0.00039374	533.8039533072345	26.805	1.2314	26.805	26.469	27.7	0					140	42	5	0	0	0	0.0023895	2	4489	4439;4489		107.1	51.21	1	4908800			38743	7939	22598	22599	46842;46843	46843					0.06291950083118536
RPKDPNNLL	9	Unmodified	_RPKDPNNLL_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.8042602539062	2	533.803823	1065.59309	0.27863	0.00014873	0.41794	0.0002231	0.69657	0.00037183	533.8039984309225	26.847	1.2152	26.825	26.478	27.693	-0.021412					125	42	4	0	0	0	0.0016712	5	4497	4442;4450;4497;4588;4610		114.2	56.48	1	5051900			38744	7939	22598	22599	46844;46845;46846;46847;46848	46846					0.06291950083118536
RPKDPNNLL	9	Unmodified	_RPKDPNNLL_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;nc|ENSG00000197170|O00232-2|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.8042602539062	2	533.803823	1065.59309	0.55116	0.00029421	0.092095	4.9161E-05	0.64326	0.00034337	533.8038446384352	26.879	1.269	26.867	26.483	27.752	-0.01156					143	44	5	0	0	0	0.00078391	3	4493	4451;4493;4611		125.53	67.807	1	5159900			38745	7939	22598	22599	46849;46850;46851	46850					0.06291950083118536
RPKETDHKSL	10	Unmodified	_RPKETDHKSL_					0	0	0		ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000025293|Q9BVI0-2|PHF20	ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.2228088378906	3	404.222805	1209.64658	-0.44032	-0.00017799	3.196	0.0012919	2.7557	0.0011139	404.2247037623399	12.717	0.42254	12.717	12.555	12.977	0					38	14	4	0	0	0	0.055155	1	207	207		57.885	37.898	1	360940			38746	532	22599	22600	46852	46852					0.0501470279498335
RPKETDHKSL	10	Unmodified	_RPKETDHKSL_					0	0	0		ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000025293|Q9BVI0-2|PHF20	ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.8304443359375	2	605.830569	1209.64658	0.12446	7.5402E-05	2.1719	0.0013158	2.2963	0.0013912	605.8304217722379	12.69	0.34542	12.69	12.555	12.9	0					32	11	5	0	0	0	0.20968	1	210	210		35.612	17.239	1	152740			38747	532	22599	22600	46853	46853					0.0501470279498335
RPKETDHKSL	10	Unmodified	_RPKETDHKSL_					0	0	0		ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000025293|Q9BVI0-2|PHF20	ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.8302612304688	2	605.830569	1209.64658	0.20084	0.00012168	1.685	0.0010208	1.8858	0.0011425	605.8304318114172	12.744	0.43387	12.645	12.49	12.924	-0.09929					29	14	3	0	0	0	0.18244	2	219	203;219		46.022	22.233	1	176860			38748	532	22599	22600	46854;46855	46855					0.0501470279498335
RPKETDHKSL	10	Unmodified	_RPKETDHKSL_					0	0	0		ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000025293|Q9BVI0-2|PHF20	ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.830322265625	2	605.830569	1209.64658	-0.096261	-5.8318E-05	1.6015	0.00097025	1.5053	0.00091193	605.8304568312298	12.754	0.35624	12.687	12.548	12.905	-0.067495					22	11	3	0	0	0	0.20968	1	222	222		42.312	18.523	1	162960			38749	532	22599	22600	46856	46856					0.0501470279498335
RPKETDHKSL	10	Unmodified	_RPKETDHKSL_					0	0	0		ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000025293|Q9BVI0-2|PHF20	ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2225341796875	3	404.222805	1209.64658	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.756	1	12.689	12.189	13.189	-0.067496								0	0	0	0.10016	1	221	221		54.259	31.484	1				38750	532	22599	22600	46857	46857					0.0501470279498335
RPKETDHKSL	10	Unmodified	_RPKETDHKSL_					0	0	0		ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000025293|Q9BVI0-2|PHF20	ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	404.222805	1209.64658	-0.53186	-0.00021499	-0.99814	-0.00040347	-1.53	-0.00061846	404.2224507667761	13.02	0.14376	12.953	12.878	13.022	-0.067496	0.15774	-0.0022062	NaN	57.885	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15016			38751	532	22599	22600							0.0501470279498335
RPKGESKDL	9	Unmodified	_RPKGESKDL_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2879028320312	2	515.288005	1028.56146	-0.023114	-1.191E-05	-0.36937	-0.00019033	-0.39249	-0.00020224	515.287454748572	12.631	0.62052	12.631	12.498	13.118	0					37	21	3	0	0	0	0.068498	1	185	185		46.022	8.0483	1	234610			38752	259;11688	22600	22601	46858	46858					0.04831957329179204
RPKGESKDL	9	Unmodified	_RPKGESKDL_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2880859375	2	515.288005	1028.56146	-0.053698	-2.767E-05	-0.38259	-0.00019714	-0.43629	-0.00022481	515.2875223488516	12.635	0.66357	12.536	12.433	13.097	-0.099291					42	22	4	0	0	0	0.083138	1	189	189		40.725	15.326	1	246540			38753	259;11688	22600	22601	46859	46859					0.04831957329179204
RPKGESKDL	9	Unmodified	_RPKGESKDL_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENST00000537120.5_1_11:61091345-61100440:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2880859375	2	515.288005	1028.56146	-0.23318	-0.00012015	-0.27258	-0.00014046	-0.50576	-0.00026061	515.2875548385967	12.666	0.63896	12.598	12.463	13.102	-0.067496					33	21	3	0	0	0	0.059067	1	197	197		49.527	11.553	1	257550			38754	259;11688	22600	22601	46860	46860					0.04831957329179204
RPKGGSGDTL	10	Unmodified	_RPKGGSGDTL_					0	0	0		nc|ENSG00000154370|Q96F44-3|TRIM11;ENSG00000154370|ENST00000284551|TRIM11	nc|ENSG00000154370|Q96F44-3|TRIM11	nc|ENSG00000154370|Q96F44-3|TRIM11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2644958496094	2	494.26453	986.514508	0.068075	3.3647E-05	-0.0020919	-1.034E-06	0.065983	3.2613E-05	494.26450793100634	13.564	0.39812	13.564	13.396	13.794	0					20	13	2	0	0	0	0.27248	1	465	465		23.79	4.5328	1	91753			38755	5126	22601	22602	46861	46861					0.020710977780595385
RPKGGSGDTL	10	Unmodified	_RPKGGSGDTL_					0	0	0		nc|ENSG00000154370|Q96F44-3|TRIM11;ENSG00000154370|ENST00000284551|TRIM11	nc|ENSG00000154370|Q96F44-3|TRIM11	nc|ENSG00000154370|Q96F44-3|TRIM11	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	494.26453	986.514508	0.030444	1.5047E-05	-0.14395	-7.1149E-05	-0.11351	-5.6102E-05	494.2644661098889	13.623	0.43097	13.523	13.337	13.768	-0.099291	-0.037182	-7.1603E-05	NaN	23.79	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90436			38756	5126	22601	22602							0.020710977780595385
RPKGLGLGANL	11	Unmodified	_RPKGLGLGANL_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7794799804688	2	548.33529	1094.65603	0.6718	0.00036837	-0.71018	-0.00038942	-0.038379	-2.1045E-05	548.3347163779013	37.13	0.54432	37.223	36.98	37.524	0.093018					46	19	3	0	0	0	0.32996	1	7677	7677		8.1555	1.9497	1	648700			38757	883	22602	22603	46862	46862					0.11248515871170639
RPKGLGVFF	9	Unmodified	_RPKGLGVFF_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.81365966796875	2	510.803094	1019.59164	0.60784	0.00031049	0.15964	8.1545E-05	0.76748	0.00039203	510.80343371244317	50.069	0.42173	50.09	49.939	50.361	0.020691					22	15	2	0	0	0	0.15219	1	11595	11595		30.637	8.8899	1	322050			38758	644	22603	22604	46863	46863					0.08262360785045075
RPKGSFSTL	9	Unmodified	_RPKGSFSTL_					0	0	0		nc|ENSG00000278030|P04435|TRBV7-9	nc|ENSG00000278030|P04435|TRBV7-9	nc|ENSG00000278030|P04435|TRBV7-9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7799987792969	2	496.779816	991.545079	0.23811	0.00011829	-0.024542	-1.2192E-05	0.21356	0.00010609	496.7797708667417	23.614	0.79819	23.614	23.336	24.134	0					68	27	4	0	0	0	0.058995	2	3494	3494;3550		49.554	26.818	1	284530			38759	12998	22604	22605	46864;46865	46864					0.04896876163093111
RPKGSFSTL	9	Unmodified	_RPKGSFSTL_					0	0	0		nc|ENSG00000278030|P04435|TRBV7-9	nc|ENSG00000278030|P04435|TRBV7-9	nc|ENSG00000278030|P04435|TRBV7-9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.77972412109375	2	496.779816	991.545079	0.31751	0.00015773	0.050256	2.4966E-05	0.36777	0.0001827	496.77969362429684	23.8	0.79257	23.727	23.474	24.267	-0.072559					66	26	4	0	0	0	0.04299	1	3579	3579		55.503	22.717	1	262980			38760	12998	22604	22605	46866	46866					0.04896876163093111
RPKGSFSTL	9	Unmodified	_RPKGSFSTL_					0	0	0		nc|ENSG00000278030|P04435|TRBV7-9	nc|ENSG00000278030|P04435|TRBV7-9	nc|ENSG00000278030|P04435|TRBV7-9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7799377441406	2	496.779816	991.545079	0.434	0.0002156	-0.063182	-3.1388E-05	0.37081	0.00018421	496.77971182427666	23.837	0.71642	23.798	23.506	24.222	-0.038927					44	24	2	0	0	0	0.16685	1	3548	3548		28.495	3.0952	1	286220			38761	12998	22604	22605	46867	46867					0.04896876163093111
RPKHKEVHL	9	Unmodified	_RPKHKEVHL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3026733398438	2	572.340907	1142.66726	-0.097267	-5.567E-05	-0.16748	-9.5857E-05	-0.26475	-0.00015153	572.3407730712592	13.414	0.25793	13.414	13.309	13.567	0					17	8	3	0	0	0	0.26099	1	444	444		2.9952	0	1	99906			38762	1047	22605	22606	46868	46868					0.10163337965332175
RPKHTRISEL	10	Unmodified	_RPKHTRISEL_					0	0	0		ENSG00000115461|ENST00000233813|IGFBP5	ENSG00000115461|ENST00000233813|IGFBP5	ENSG00000115461|ENST00000233813|IGFBP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.5487976074219	3	412.910561	1235.70985	-0.081066	-3.3473E-05	-0.40367	-0.00016668	-0.48474	-0.00020015	412.91040589839946	16.931	0.99582	16.931	16.632	17.628	0					79	34	4	0	0	0	0.3037	1	1457	1457		23.964	12.446	1	360630			38763	2649	22606	22607	46869	46869					0.1014268830290348
RPKHTRISEL	10	Unmodified	_RPKHTRISEL_					0	0	0		ENSG00000115461|ENST00000233813|IGFBP5	ENSG00000115461|ENST00000233813|IGFBP5	ENSG00000115461|ENST00000233813|IGFBP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.5486145019531	3	412.910561	1235.70985	0.044437	1.8349E-05	-0.34195	-0.00014119	-0.29751	-0.00012285	412.91037603542674	17.092	1.1463	16.975	16.72	17.866	-0.11739					93	40	4	0	0	0	0.29582	1	1555	1555		25.997	13.77	1	345020			38764	2649	22606	22607	46870	46870					0.1014268830290348
RPKHTRISEL	10	Unmodified	_RPKHTRISEL_					0	0	0		ENSG00000115461|ENST00000233813|IGFBP5	ENSG00000115461|ENST00000233813|IGFBP5	ENSG00000115461|ENST00000233813|IGFBP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.5486145019531	3	412.910561	1235.70985	0.2528	0.00010438	-0.37306	-0.00015404	-0.12027	-4.9659E-05	412.91039076642215	17.028	1.2195	16.967	16.705	17.925	-0.060429					104	43	4	0	0	0	0.31068	1	1505	1505		16.275	3.4019	1	341140			38765	2649	22606	22607	46871	46871					0.1014268830290348
RPKKPGQSF	9	Unmodified	_RPKKPGQSF_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP;ENSG00000163714|ENST00000473835|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.801025390625	2	522.801083	1043.58761	0.15169	7.9305E-05	-0.20443	-0.00010688	-0.052737	-2.7571E-05	522.8011795795769	13.978	0.76121	13.978	13.687	14.448	0					79	26	5	0	0	0	4.3881E-05	3	570	570;615;657		149.91	105.51	1	4777900			38766	12800	22607	22608	46872;46873;46874	46872					0.0675627129132863
RPKKPGQSF	9	Unmodified	_RPKKPGQSF_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP;ENSG00000163714|ENST00000473835|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.80126953125	2	522.801083	1043.58761	0.076469	3.9978E-05	0.14948	7.8149E-05	0.22595	0.00011813	522.8012548717192	14.113	0.68447	14.008	13.738	14.422	-0.10466					77	23	4	0	0	0	4.3881E-05	3	646	604;646;690		149.91	105.51	1	5265600			38767	12800	22607	22608	46875;46876;46877	46876					0.0675627129132863
RPKKPGQSF	9	Unmodified	_RPKKPGQSF_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP;ENSG00000163714|ENST00000473835|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.801025390625	2	522.801083	1043.58761	0.092813	4.8523E-05	0.044004	2.3005E-05	0.13682	7.1528E-05	522.8012523082638	14.059	0.84208	13.993	13.774	14.616	-0.066068					83	29	5	0	0	0	0.00012108	3	594	594;639;679		137.42	93.017	1	4995100			38768	12800	22607	22608	46878;46879;46880	46878					0.0675627129132863
RPKKPRSL	8	Unmodified	_RPKKPRSL_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.31927490234375	2	491.319443	980.624333	0.0037066	1.8211E-06	-0.085959	-4.2233E-05	-0.082252	-4.0412E-05	491.3193633029498	13.041	0.51838	13.041	12.847	13.365	0					43	18	4	0	0	0	0.41087	1	302	302		18.146	8.0724	1	274190			38769	2568	22608	22609	46881	46881					0.1332456790788683
RPKKPRSL	8	Unmodified	_RPKKPRSL_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.3193664550781	2	491.319443	980.624333	0.014626	7.1858E-06	0.060991	2.9966E-05	0.075616	3.7152E-05	491.31936685083366	13.135	0.54853	13.036	12.814	13.362	-0.09929					42	18	3	0	0	0	0.32789	1	335	335		27.629	8.3718	1	233610			38770	2568	22608	22609	46882	46882					0.1332456790788683
RPKKPRSL	8	Unmodified	_RPKKPRSL_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.31927490234375	2	491.319443	980.624333	-0.075007	-3.6852E-05	0.13459	6.6128E-05	0.059586	2.9276E-05	491.3194067367058	13.086	0.59649	13.018	12.819	13.416	-0.067495					46	20	4	0	0	0	0.41709	1	311	311		17.113	3.2068	1	241590			38771	2568	22608	22609	46883	46883					0.1332456790788683
RPKKSGDMTL	10	Oxidation (M)	_RPKKSGDM(Oxidation (M))TL_		RPKKSGDM(1)TL		RPKKSGDM(46)TL	0	0	1		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.8082275390625	2	574.808248	1147.60194	-0.11941	-6.8639E-05	0.39668	0.00022802	0.27727	0.00015938	574.8085634227496	12.888	0.52791	12.888	12.699	13.227	0					53	18	4	0	0	0	0.10933	1	248	248		46.022	24.485	1	415770			38772	587	22609	22610	46884	46884		68			0.03404555657311903
RPKKSGDMTL	10	Oxidation (M)	_RPKKSGDM(Oxidation (M))TL_		RPKKSGDM(1)TL		RPKKSGDM(44)TL	0	0	1		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.8081665039062	2	574.808248	1147.60194	-0.18003	-0.00010348	0.37698	0.00021669	0.19695	0.00011321	574.8084908278782	12.95	0.74719	12.883	12.64	13.388	-0.067496					63	25	4	0	0	0	0.11865	1	257	257		43.982	25.836	1	433150			38773	587	22609	22610	46885	46885		68			0.03404555657311903
RPKLIGEEL	9	Unmodified	_RPKLIGEEL_					0	0	0		ENST00000555816.5_1_14:92547404-92563043:-|nuORF;ENST00000556274.5_1_14:92547307-92555106:-|nuORF;nc|ENSG00000066427|P54252-5|ATXN3;ENST00000554214.5_1_14:92547307-92562474:-|nuORF;ENST00000555958.5_1_14:92547307-92572896:-|nuORF;ENST00000553686.5_1_14:92547307-92572896:-|nuORF;ENST00000553309.5_1_14:92547307-92572896:-|nuORF;nc|ENSG00000066427|P54252-3|ATXN3;nc|ENSG00000066427|P54252-4|ATXN3;ENSG00000066427|ENST00000644486|ATXN3;nc|ENSG00000066427|P54252-1|ATXN3	ENST00000555816.5_1_14:92547404-92563043:-|nuORF	ENST00000555816.5_1_14:92547404-92563043:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7899169921875	2	527.816399	1053.61824	0.76047	0.00040139	-1.7406	-0.00091873	-0.98015	-0.00051734	527.8159776209608	37.533	1.646	37.533	37.285	38.931	0					80	58	2	0	0	0	0.18936	1	7763	7763		26.268	9.1552	1	1009300			38774	840	22610	22611	46886	46886					0.09358004885712035
RPKLPEDPLL	10	Unmodified	_RPKLPEDPLL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3511352539062	2	589.350606	1176.68666	0.69807	0.00041141	0.048545	2.861E-05	0.74662	0.00044002	589.3505696684039	47.046	0.97942	47.046	46.703	47.682	0					83	34	4	0	0	0	0.0050981	3	10653	10602;10653;10701		91.085	45.345	1	2039700			38775	6378	22611	22612	46887;46888;46889	46888					0.10538249465548688
RPKLPEDPLL	10	Unmodified	_RPKLPEDPLL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.35107421875	2	589.350606	1176.68666	0.36538	0.00021534	0.58067	0.00034222	0.94605	0.00055756	589.3508658787115	46.966	0.97165	47.018	46.679	47.651	0.052574					93	35	4	0	0	0	0.0050981	3	10630	10582;10630;10678		91.085	49.129	1	1785900			38776	6378	22611	22612	46890;46891;46892	46891					0.10538249465548688
RPKLPEDPLL	10	Unmodified	_RPKLPEDPLL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.35107421875	2	589.350606	1176.68666	0.90549	0.00053365	-0.087282	-5.144E-05	0.81821	0.00048221	589.3504969078994	47.059	0.91368	47.114	46.709	47.622	0.054371					81	32	4	0	0	0	0.0034473	3	10631	10574;10631;10677		100.71	47.305	1	2487000			38777	6378	22611	22612	46893;46894;46895	46894					0.10538249465548688
RPKLPSRGRVL	11	Unmodified	_RPKLPSRGRVL_					0	0	0		ENST00000553961.1_1_14:69446800-69446896:+|nuORF	ENST00000553961.1_1_14:69446800-69446896:+|nuORF	ENST00000553961.1_1_14:69446800-69446896:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.9417724609375	3	426.942084	1277.80442	0.27542	0.00011759	-0.58148	-0.00024826	-0.30606	-0.00013067	426.941917602408	37.542	1.7511	37.542	37.207	38.958	0					188	62	6	0	0	0	0.25663	2	7690	7690;7735		26.121	11.903	1	10811000			38778	11827	22612	22613	46896;46897	46896					0.17663246844881542
RPKLPSRGRVL	11	Unmodified	_RPKLPSRGRVL_					0	0	0		ENST00000553961.1_1_14:69446800-69446896:+|nuORF	ENST00000553961.1_1_14:69446800-69446896:+|nuORF	ENST00000553961.1_1_14:69446800-69446896:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.9421691894531	3	426.942084	1277.80442	-0.019299	-8.2396E-06	-0.27445	-0.00011717	-0.29375	-0.00012541	426.94206110226315	37.484	1.5871	37.572	37.193	38.78	0.087406					185	57	5	0	0	0	0.25663	3	7749	7664;7704;7749		26.121	4.8211	1	9992500			38779	11827	22612	22613	46898;46899;46900	46900					0.17663246844881542
RPKLPSRGRVL	11	Unmodified	_RPKLPSRGRVL_					0	0	0		ENST00000553961.1_1_14:69446800-69446896:+|nuORF	ENST00000553961.1_1_14:69446800-69446896:+|nuORF	ENST00000553961.1_1_14:69446800-69446896:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.9419250488281	3	426.942084	1277.80442	-0.025259	-1.0784E-05	-0.20934	-8.9376E-05	-0.2346	-0.00010016	426.94207055821585	37.464	1.6407	37.557	37.222	38.863	0.093018					192	59	5	0	0	0	0.25663	4	7661	7661;7706;7794;7855		26.121	8.2577	1	10075000			38780	11827	22612	22613	46901;46902;46903;46904	46901					0.17663246844881542
RPKLTFSYIK	10	Unmodified	_RPKLTFSYIK_					0	0	0			REV__ENSG00000171428|ENST00000307719|NAT1	REV__ENSG00000171428|ENST00000307719|NAT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.258056640625	3	418.251924	1251.73394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.933	1	26.933	26.433	27.433	0								0	0	0	0.35783	1	4503	4503		11.518	0.61892	1		+		38781	17635	22613	22614	46905	46905					0.11814528736545071
RPKLYIVNL	9	Unmodified	_RPKLYIVNL_					0	0	0		nc|ENSG00000187531|Q9NRC8-3|SIRT7;ENSG00000187531|ENST00000328666|SIRT7;ENST00000574153.1_1_17:79871648-79872097:-|nuORF;ENST00000574992.5_1_17:79871648-79872373:-|nuORF;ENST00000576156.1_1_17:79871830-79872373:-|nuORF;ENST00000572976.5_1_17:79870294-79872532:-|nuORF	nc|ENSG00000187531|Q9NRC8-3|SIRT7	nc|ENSG00000187531|Q9NRC8-3|SIRT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2721557617188	2	558.350409	1114.68626	0.72016	0.0004021	-0.69143	-0.00038606	0.028724	1.6038E-05	558.3503662073682	50.75	0.49292	50.797	50.492	50.985	0.046574					47	17	4	0	0	0	0.1939	1	11754	11754		24.021	6.9077	1	896920			38782	7685	22614	22615	46906	46906					0.1335087453635424
RPKNLMQTL	9	Oxidation (M)	_RPKNLM(Oxidation (M))QTL_		RPKNLM(1)QTL		RPKNLM(80)QTL	0	0	1		nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.8131103515625	2	558.813333	1115.61211	0.072916	4.0747E-05	-0.21118	-0.00011801	-0.13827	-7.7266E-05	558.8131512283596	23.047	1.0929	23.047	22.42	23.513	0					96	37	3	0	0	0	0.0098873	3	3305	3252;3305;3359		79.596	29.663	1	464840			38783	12776	22615	22616	46907;46908;46909	46908		979			0.05893163382552302
RPKNLMQTL	9	Oxidation (M)	_RPKNLM(Oxidation (M))QTL_		RPKNLM(1)QTL		RPKNLM(69)QTL	0	0	1		nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.81298828125	2	558.813333	1115.61211	0.13528	7.5598E-05	-0.46062	-0.0002574	-0.32534	-0.00018181	558.8131498673657	23.129	1.1963	23.042	22.461	23.657	-0.087608					92	42	3	0	0	0	0.016571	2	3342	3296;3342		69.338	31.163	1	550800			38784	12776	22615	22616	46910;46911	46911		979			0.05893163382552302
RPKNLMQTL	9	Oxidation (M)	_RPKNLM(Oxidation (M))QTL_		RPKNLM(1)QTL		RPKNLM(74)QTL	0	0	1		nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.8131713867188	2	558.813333	1115.61211	0.17627	9.8499E-05	-0.34736	-0.00019411	-0.1711	-9.5611E-05	558.8131050557835	23.152	1.2585	23.108	22.501	23.759	-0.044867					116	44	4	0	0	0	0.013404	2	3343	3293;3343		74.2	36.841	1	578390			38785	12776	22615	22616	46912;46913	46913		979			0.05893163382552302
RPKPIITSV	9	Unmodified	_RPKPIITSV_					0	0	0		ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.8214111328125	2	505.821484	1009.62842	0.32733	0.00016557	-0.87884	-0.00044454	-0.55152	-0.00027897	505.82107952643673	29.39	0.7478	29.403	29.11	29.858	0.012264					51	25	3	0	0	0	0.069258	1	5280	5280		45.74	25.325	1	405070			38786	6301	22616	22617	46914	46914					0.12398612610934379
RPKPIITSV	9	Unmodified	_RPKPIITSV_					0	0	0		ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.8211975097656	2	505.821484	1009.62842	0.12785	6.467E-05	-0.64079	-0.00032412	-0.51294	-0.00025945	505.82117482622516	29.442	0.58123	29.456	29.192	29.773	0.013474					44	19	3	0	0	0	0.074552	1	5296	5296		43.772	19.752	1	399210			38787	6301	22616	22617	46915	46915					0.12398612610934379
RPKPIITSV	9	Unmodified	_RPKPIITSV_					0	0	0		ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	505.821484	1009.62842	0.51365	0.00025981	-1.1062	-0.00055954	-0.59256	-0.00029973	505.8209537378882	29.452	0.63208	29.452	29.169	29.801	0	0.015447	-0.00018684	NaN	45.74	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435220			38788	6301	22616	22617							0.12398612610934379
RPKPLEQF	8	Unmodified	_RPKPLEQF_					0	0	0			REV__ENST00000427196.1_1_6:33218396-33219400:+|nuORF	REV__ENST00000427196.1_1_6:33218396-33219400:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.80694580078125	2	507.790184	1013.56581	0.1983	0.00010069	-0.63074	-0.00032028	-0.43245	-0.00021959	507.78965575132895	33.16	0.80548	33.16	32.811	33.617	0					36	28	2	0	0	0	0.32099	1	6416	6416		19.257	0	1	149140	+		38789	20910	22617	22618	46916	46916					0.05957466542747625
RPKPPSATSI	10	Unmodified	_RPKPPSATSI_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.30615234375	2	527.306198	1052.59784	0.45939	0.00024224	-0.34028	-0.00017943	0.1191	6.2804E-05	527.3059357324096	25.049	0.9615	25.049	24.423	25.384	0					71	32	3	0	0	0	0.016475	3	3923	3873;3923;3976		75.571	42.785	1	451250			38790	2298	22618	22619	46917;46918;46919	46918					0.07364834225904815
RPKPPSATSI	10	Unmodified	_RPKPPSATSI_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.30615234375	2	527.306198	1052.59784	0.28481	0.00015018	-0.057095	-3.0106E-05	0.22771	0.00012007	527.3060660851119	25.087	0.99439	25.031	24.43	25.425	-0.055931					79	34	4	0	0	0	0.024262	2	3969	3926;3969		67.081	34.295	1	520290			38791	2298	22618	22619	46920;46921	46921					0.07364834225904815
RPKPPSATSI	10	Unmodified	_RPKPPSATSI_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3062133789062	2	527.306198	1052.59784	0.11689	6.1636E-05	-0.035676	-1.8812E-05	0.081213	4.2824E-05	527.3061101136623	25.083	1.4263	25.051	24.089	25.515	-0.031408					87	49	3	0	0	0	0.016475	3	3942	3888;3942;3992		75.571	42.785	1	527880			38792	2298	22618	22619	46922;46923;46924	46923					0.07364834225904815
RPKPSSSPVIF	11	Unmodified	_RPKPSSSPVIF_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547987.2_1_12:53854819-53861193:+|nuORF;ENST00000547717.1_1_12:53848575-53861193:+|nuORF	nc|ENSG00000197111|Q15366-7|PCBP2	nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.848388671875	2	607.84823	1213.68191	0.16472	0.00010013	0.23523	0.00014298	0.39995	0.00024311	607.8483405121209	35.418	1.0591	35.418	35.033	36.093	0					104	38	4	0	0	0	0.0033936	4	7095	7047;7095;7144;7189		108.26	108.26	1	3249600			38793	7929	22619	22620	46925;46926;46927;46928	46926					0.0836136532279852
RPKPSSSPVIF	11	Unmodified	_RPKPSSSPVIF_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547987.2_1_12:53854819-53861193:+|nuORF;ENST00000547717.1_1_12:53848575-53861193:+|nuORF	nc|ENSG00000197111|Q15366-7|PCBP2	nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.8485107421875	2	607.84823	1213.68191	0.17264	0.00010494	0.26053	0.00015836	0.43317	0.0002633	607.8483366601151	35.328	0.95785	35.403	35.097	36.055	0.075306					100	34	4	0	0	0	0.0024118	4	7108	7014;7061;7108;7163		101.54	79.953	1	3848600			38794	7929	22619	22620	46929;46930;46931;46932	46931					0.0836136532279852
RPKQEKAFSL	10	Unmodified	_RPKQEKAFSL_					0	0	0		ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.3036499023438	2	602.345855	1202.67716	0.27507	0.00016568	0.16215	9.767E-05	0.43721	0.00026335	602.3459327858877	23.287	0.33842	23.287	23.11	23.448	0					23	11	3	0	0	0	0.32011	1	3389	3389		4.5289	1.7937	1	60257			38795	4777	22620	22621	46933	46933					0.08392481180044342
RPKQEKAFSL	10	Unmodified	_RPKQEKAFSL_					0	0	0		ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.3032836914062	2	602.345855	1202.67716	0.36383	0.00021915	0.14304	8.6157E-05	0.50687	0.00030531	602.3458806752064	23.379	0.54863	23.292	23.108	23.657	-0.087608					27	19	2	0	0	0	0.3179	1	3419	3419		8.9762	4.7867	1	72108			38796	4777	22620	22621	46934	46934					0.08392481180044342
RPKQEKAFSL	10	Unmodified	_RPKQEKAFSL_					0	0	0		ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3036499023438	2	602.345855	1202.67716	0.36904	0.00022229	0.62232	0.00037485	0.99136	0.00059714	602.3463077831416	23.458	0.35948	23.415	23.199	23.559	-0.042229					21	12	2	0	0	0	0.32088	1	3468	3468		2.7352	0	1	47596			38797	4777	22620	22621	46935	46935					0.08392481180044342
RPKQKVAL	8	Unmodified	_RPKQKVAL_					0	0	0		nc|ENSG00000127586|Q8WVB6-2|CHTF18;ENSG00000127586|ENST00000262315|CHTF18	nc|ENSG00000127586|Q8WVB6-2|CHTF18	nc|ENSG00000127586|Q8WVB6-2|CHTF18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.3083190917969	2	470.308544	938.602535	-0.074242	-3.4917E-05	0.064957	3.055E-05	-0.009285	-4.3668E-06	470.30849648987265	15.622	0.47424	15.512	15.312	15.786	-0.10981					36	15	3	0	0	0	0.45307	1	1122	1122		4.756	0	1	148100			38798	3331	22621	22622	46936	46936					0.13077763159321876
RPKQLCGESTL	11	Unmodified	_RPKQLCGESTL_					0	0	0		ENST00000394949.8_1_15:75722732-75743878:-|nuORF	ENST00000394949.8_1_15:75722732-75743878:-|nuORF	ENST00000394949.8_1_15:75722732-75743878:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.22027587890625	3	411.220295	1230.63906	0.13906	5.7185E-05	-1.3814	-0.00056805	-1.2423	-0.00051086	411.2197527716141	19.53	1.1238	19.414	19.058	20.182	-0.11592					131	38	4	0	0	0	0.42246	1	2202	2202		8.2864	0.34103	1	737580			38799	10079	22622	22623	46937	46937					0.03296227203077251
RPKQPGPVKL	10	Unmodified	_RPKQPGPVKL_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7756958007812	2	560.353483	1118.69241	0.35538	0.00019914	-0.7161	-0.00040127	-0.36072	-0.00020213	560.3530214527285	21.375	0.52057	21.375	21.08	21.601	0					30	17	2	0	0	0	0.32054	1	2760	2760		3.2813	1.6287	1	62794			38800	7872	22623	22624	46938	46938					0.1378139276789625
RPKRATHVGNL	11	Unmodified	_RPKRATHVGNL_					0	0	0			REV__MYO19|p.S685Kfs*29|1|0.18|ENSG00000278259|chr17:36503108-36503123|TTGGCAGGATATGGGC/-|frameshift_variant	REV__MYO19|p.S685Kfs*29|1|0.18|ENSG00000278259|chr17:36503108-36503123|TTGGCAGGATATGGGC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9145202636719	3	416.914305	1247.72109	-0.001802	-7.5127E-07	0.3046	0.00012699	0.30279	0.00012624	416.9144097997187	16.473	0.62078	16.358	16.047	16.667	-0.11434					62	21	4	0	0	0	0.43513	1	1359	1359		6.6235	0.3891	1	483280	+		38801	22871	22624	22625	46939	46939					0.10713510397044956
RPKRATHVGNL	11	Unmodified	_RPKRATHVGNL_					0	0	0			REV__MYO19|p.S685Kfs*29|1|0.18|ENSG00000278259|chr17:36503108-36503123|TTGGCAGGATATGGGC/-|frameshift_variant	REV__MYO19|p.S685Kfs*29|1|0.18|ENSG00000278259|chr17:36503108-36503123|TTGGCAGGATATGGGC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9142150878906	3	416.914305	1247.72109	-0.001802	-7.5127E-07	0.3046	0.00012699	0.30279	0.00012624	416.9144097997187	16.473	0.62078	16.358	16.047	16.667	-0.11434					62	21	4	0	0	0	0.3299	1	1307	1307		6.6235	2.7775	1	483280	+		38802	22871	22624	22625	46940	46940					0.10713510397044956
RPKRPANQF	9	Unmodified	_RPKRPANQF_					0	0	0		ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3174438476562	2	557.317432	1112.62031	0.018885	1.0525E-05	-0.24768	-0.00013804	-0.22879	-0.00012751	557.3172120316925	15.118	1.3853	15.118	14.561	15.947	0					105	48	4	0	0	0	0.0046874	1	921	921		88.904	54.502	1	1122900			38803	8227	22625	22626	46941	46941					0.06850478414162353
RPKRPANQF	9	Unmodified	_RPKRPANQF_					0	0	0		ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3172607421875	2	557.317432	1112.62031	0.11451	6.3816E-05	-0.33038	-0.00018412	-0.21587	-0.00012031	557.3171974389115	15.282	1.2525	15.172	14.618	15.871	-0.10981					109	43	4	0	0	0	0.051692	2	980	933;980		52.268	24.64	1	799350			38804	8227	22625	22626	46942;46943	46943					0.06850478414162353
RPKRPANQF	9	Unmodified	_RPKRPANQF_					0	0	0		ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3172607421875	2	557.317432	1112.62031	-0.028217	-1.5726E-05	-0.12129	-6.76E-05	-0.14951	-8.3326E-05	557.317357960807	15.328	1.1649	15.264	14.871	16.036	-0.064413					95	39	4	0	0	0	0.034444	2	1004	956;1004		58.679	31.05	1	1105800			38805	8227	22625	22626	46944;46945	46945					0.06850478414162353
RPKRPPLKEF	10	Unmodified	_RPKRPPLKEF_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;DIP2B|p.Y842Lfs*2|1|0.12|ENSG00000066084|chr12:50706652-50706653|-/T|frameshift_variant;ENST00000549620.5_1_12:50898851-51072694:+|nuORF;nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A	ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.2593078613281	3	423.259302	1266.75608	-0.052457	-2.2203E-05	0.1469	6.2178E-05	0.094445	3.9975E-05	423.25930067264517	21.693	1.0843	21.693	21.138	22.222	0					81	38	3	0	0	0	0.27239	3	2898	2898;2958;2989		23.801	17.609	1	262980			38806	832;5458	22626	22627	46946;46947;46948	46946					0.13336753204976048
RPKRPPLKEF	10	Unmodified	_RPKRPPLKEF_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;DIP2B|p.Y842Lfs*2|1|0.12|ENSG00000066084|chr12:50706652-50706653|-/T|frameshift_variant;ENST00000549620.5_1_12:50898851-51072694:+|nuORF;nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A	ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.25927734375	3	423.259302	1266.75608	0.0056344	2.3848E-06	-0.16323	-6.9087E-05	-0.15759	-6.6702E-05	423.25918994532924	21.775	1.2995	21.675	20.933	22.233	-0.10034					84	46	3	0	0	0	0.33753	2	2985	2937;2985		14.957	10.06	1	252940			38807	832;5458	22626	22627	46949;46950	46950					0.13336753204976048
RPKRPPLKEF	10	Unmodified	_RPKRPPLKEF_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B;DIP2B|p.Y842Lfs*2|1|0.12|ENSG00000066084|chr12:50706652-50706653|-/T|frameshift_variant;ENST00000549620.5_1_12:50898851-51072694:+|nuORF;nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A	ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000160305|Q14689-6|DIP2A	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.5936279296875	3	423.259302	1266.75608	-0.063637	-2.6935E-05	0.011696	4.9506E-06	-0.051941	-2.1984E-05	423.25927267095017	21.736	1.3172	21.687	21.179	22.496	-0.049377					86	46	4	0	0	0	0.33753	2	2932	2932;2983		14.957	8.7653	1	257540			38808	832;5458	22626	22627	46951;46952	46951					0.13336753204976048
RPKRPPSPDRS	11	Unmodified	_RPKRPPSPDRS_					0	0	0			REV__ENSG00000146909|ENST00000275820|NOM1	REV__ENSG00000146909|ENST00000275820|NOM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.8624267578125	2	646.862734	1291.71092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.2	1	103.2	102.7	103.7	0								0	0	0	0.37609	1	27428	27428		2.4985	0.84587	1		+		38809	16363	22627	22628	46953	46953					0.07672902671788506
RPKRRWRG	8	Unmodified	_RPKRRWRG_					0	0	0			REV__ENST00000569248.5_1_16:730446-730920:+|nuORF	REV__ENST00000569248.5_1_16:730446-730920:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.746826171875	2	556.339033	1110.66351	0.10901	6.0644E-05	2.3563	0.0013109	2.4653	0.0013716	556.3400268678683	15.246	0.83139	15.136	14.955	15.786	-0.10981					38	28	2	0	0	0	0.34247	1	998	998		4.756	0	1	43659	+		38810	22402	22628	22629	46954	46954					0.1126071298210718
RPKSNIVLL	9	Unmodified	_RPKSNIVLL_					0	0	0		ENSG00000156738|ENST00000345732|MS4A1;nc|ENSG00000156738|P11836-2|MS4A1	ENSG00000156738|ENST00000345732|MS4A1	ENSG00000156738|ENST00000345732|MS4A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3350219726562	2	520.334759	1038.65496	0.52423	0.00027278	0.33217	0.00017284	0.8564	0.00044561	520.3347452555245	36.245	0.54799	36.245	35.988	36.536	0					35	19	2	0	0	0	0.15763	1	7350	7350		29.841	3.5724	1	473080			38811	5254	22629	22630	46955	46955					0.13718301502285613
RPKSNIVLL	9	Unmodified	_RPKSNIVLL_					0	0	0		ENSG00000156738|ENST00000345732|MS4A1;nc|ENSG00000156738|P11836-2|MS4A1	ENSG00000156738|ENST00000345732|MS4A1	ENSG00000156738|ENST00000345732|MS4A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	520.334759	1038.65496	0.51945	0.00027029	0.46037	0.00023955	0.97982	0.00050983	520.3347984512454	36.15	0.58289	36.232	35.928	36.511	0.082359	0.024435	0.00016066	NaN	29.841	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	496250			38812	5254	22629	22630							0.13718301502285613
RPKSNIVLL	9	Unmodified	_RPKSNIVLL_					0	0	0		ENSG00000156738|ENST00000345732|MS4A1;nc|ENSG00000156738|P11836-2|MS4A1	ENSG00000156738|ENST00000345732|MS4A1	ENSG00000156738|ENST00000345732|MS4A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	520.334759	1038.65496	0.63651	0.0003312	0.16631	8.6539E-05	0.80283	0.00041774	520.3346988584951	36.059	0.59871	36.146	35.931	36.529	0.086246	-0.06203	-0.00014535	NaN	29.841	38	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	448260			38813	5254	22629	22630							0.13718301502285613
RPKSPGGI	8	Unmodified	_RPKSPGGI_					0	0	0		LRG1|p.N306Rfs*29|1|0.31|ENSG00000171236|chr19:4538064-4538067|AGGT/-|frameshift_variant;ENSG00000171236|ENST00000306390|LRG1	LRG1|p.N306Rfs*29|1|0.31|ENSG00000171236|chr19:4538064-4538067|AGGT/-|frameshift_variant	LRG1|p.N306Rfs*29|1|0.31|ENSG00000171236|chr19:4538064-4538067|AGGT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.88037109375	2	406.24287	810.471186	-0.1186	-4.8179E-05	0.54641	0.00022198	0.42782	0.0001738	406.24298701981854	24.614	1.2247	24.614	24.279	25.504	0					86	41	4	0	0	0	0.3366	1	3742	3742		18.135	2.3668	1	437260			38814	6529	22630	22631	46956	46956					0.05836952791423755
RPKSSQIGA	9	Unmodified	_RPKSSQIGA_					0	0	0		ENSG00000108439|ENST00000642017|PNPO;nc|ENSG00000108439|Q9NVS9-3|PNPO	ENSG00000108439|ENST00000642017|PNPO	ENSG00000108439|ENST00000642017|PNPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2701110839844	2	472.269616	942.524678	-0.2396	-0.00011316	0.75084	0.0003546	0.51124	0.00024144	472.2699220622436	13.343	0.42025	13.343	13.147	13.567	0					31	14	3	0	0	0	0.064268	1	394	394		47.594	3.822	1	249750			38815	2186	22631	22632	46957	46957					0.051117055032818826
RPKSSQIGA	9	Unmodified	_RPKSSQIGA_					0	0	0		ENSG00000108439|ENST00000642017|PNPO;nc|ENSG00000108439|Q9NVS9-3|PNPO	ENSG00000108439|ENST00000642017|PNPO	ENSG00000108439|ENST00000642017|PNPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2703552246094	2	472.269616	942.524678	-0.16764	-7.9172E-05	1.0424	0.00049231	0.8748	0.00041314	472.26995594195955	13.397	0.56651	13.298	13.042	13.608	-0.099291					40	19	3	0	0	0	0.15763	1	417	417		29.841	4.4413	1	266500			38816	2186	22631	22632	46958	46958					0.051117055032818826
RPKSSQIGA	9	Unmodified	_RPKSSQIGA_					0	0	0		ENSG00000108439|ENST00000642017|PNPO;nc|ENSG00000108439|Q9NVS9-3|PNPO	ENSG00000108439|ENST00000642017|PNPO	ENSG00000108439|ENST00000642017|PNPO	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	472.269616	942.524678	-0.16068	-7.5887E-05	1.0117	0.00047779	0.85101	0.0004019	472.2700549645344	13.392	0.38513	13.324	13.189	13.574	-0.067495	0.0026124	8.1683E-05	NaN	47.594	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227320			38817	2186	22631	22632							0.051117055032818826
RPKSSQIGAVV	11	Unmodified	_RPKSSQIGAVV_					0	0	0		ENSG00000108439|ENST00000642017|PNPO;nc|ENSG00000108439|Q9NVS9-3|PNPO	ENSG00000108439|ENST00000642017|PNPO	ENSG00000108439|ENST00000642017|PNPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.337890625	2	571.33803	1140.66151	0.17573	0.0001004	-0.64677	-0.00036952	-0.47104	-0.00026913	571.3373140376516	25.133	0.6516	25.077	24.862	25.514	-0.055931					38	22	3	0	0	0	0.37165	1	3963	3963		14.957	7.047	1	158880			38818	2186	22632	22633	46959	46959					0.09680194662973918
RPKSVGGPI	9	Unmodified	_RPKSVGGPI_					0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.24957275390625	2	455.777077	909.5396	-0.16266	-7.4136E-05	0.49313	0.00022476	0.33047	0.00015062	455.77721768873306	15.1	0.4906	15.1	14.981	15.471	0					29	16	2	0	0	0	0.25622	1	928	928		7.2892	2.0586	1	67874	+		38819	16568	22633	22634	46960	46960					0.0812119737129251
RPKSVIKLS	9	Unmodified	_RPKSVIKLS_					0	0	0		ENST00000409333.1_1_2:170657480-170662026:+|nuORF	ENST00000409333.1_1_2:170657480-170662026:+|nuORF	ENST00000409333.1_1_2:170657480-170662026:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7879638671875	2	514.334759	1026.65496	0.27471	0.00014129	-0.77074	-0.00039642	-0.49603	-0.00025512	514.3340776137032	16.924	0.17501	16.924	16.839	17.014	0					9	5	2	0	0	0	0.25938	1	1456	1456		4.3292	0.73274	1	21705			38820	10245	22634	22635	46961	46961					0.14270301502278926
RPKTETKSV	9	Unmodified	_RPKTETKSV_					0	0	0		ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3040771484375	2	523.303655	1044.59276	0.16447	8.6069E-05	-0.16237	-8.4971E-05	0.0020976	1.0977E-06	523.3035830286619	12.252	0.34747	12.156	12.037	12.384	-0.096607					22	12	3	0	0	0	0.26278	1	78	78		14.405	2.9107	1	88205			38821	5352	22635	22636	46962	46962					0.07224530363282611
RPKTFGMDM	9	2 Oxidation (M)	_RPKTFGM(Oxidation (M))DM(Oxidation (M))_		RPKTFGM(1)DM(1)		RPKTFGM(91)DM(91)	0	0	2		ENST00000462589.1_1_1:192544922-192545496:+|nuORF;ENST00000498352.1_1_1:192544922-192545979:+|nuORF;nc|ENSG00000090104|Q08116-2|RGS1;ENSG00000090104|ENST00000367459|RGS1	ENST00000462589.1_1_1:192544922-192545496:+|nuORF	ENST00000462589.1_1_1:192544922-192545496:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7545776367188	2	557.754627	1113.4947	0.10591	5.907E-05	-0.54966	-0.00030658	-0.44375	-0.00024751	557.7545675985541	15.824	1.1927	15.824	15.413	16.606	0					135	41	6	0	0	0	0.0044119	1	1144	1144		91.085	69.548	1	1135800			38822	1370	22636	22637	46963	46963		169;170			-0.057507375485783996
RPKTFGMDM	9	2 Oxidation (M)	_RPKTFGM(Oxidation (M))DM(Oxidation (M))_		RPKTFGM(1)DM(1)		RPKTFGM(120)DM(120)	0	0	2		ENST00000462589.1_1_1:192544922-192545496:+|nuORF;ENST00000498352.1_1_1:192544922-192545979:+|nuORF;nc|ENSG00000090104|Q08116-2|RGS1;ENSG00000090104|ENST00000367459|RGS1	ENST00000462589.1_1_1:192544922-192545496:+|nuORF	ENST00000462589.1_1_1:192544922-192545496:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7545776367188	2	557.754627	1113.4947	0.12453	6.9455E-05	-0.4521	-0.00025216	-0.32757	-0.0001827	557.7546189107245	15.941	1.1798	15.826	15.431	16.611	-0.11434					119	40	5	0	0	0	0.0011116	2	1180	1180;1238		121.35	92.859	1	1146700			38823	1370	22636	22637	46964;46965	46964		169;170			-0.057507375485783996
RPKTFGMDM	9	2 Oxidation (M)	_RPKTFGM(Oxidation (M))DM(Oxidation (M))_		RPKTFGM(1)DM(1)		RPKTFGM(100)DM(100)	0	0	2		ENST00000462589.1_1_1:192544922-192545496:+|nuORF;ENST00000498352.1_1_1:192544922-192545979:+|nuORF;nc|ENSG00000090104|Q08116-2|RGS1;ENSG00000090104|ENST00000367459|RGS1	ENST00000462589.1_1_1:192544922-192545496:+|nuORF	ENST00000462589.1_1_1:192544922-192545496:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.754638671875	2	557.754627	1113.4947	0.082519	4.6025E-05	-0.36837	-0.00020546	-0.28585	-0.00015943	557.7546469508623	15.885	1.1003	15.822	15.426	16.526	-0.062533					123	37	5	0	0	0	0.0031966	3	1162	1115;1162;1212		100.71	73.08	1	1224900			38824	1370	22636	22637	46966;46967;46968	46967		169;170			-0.057507375485783996
RPKTPIQPR	9	Unmodified	_RPKTPIQPR_					0	0	0			REV__ENSG00000100139|ENST00000215957|MICALL1	REV__ENSG00000100139|ENST00000215957|MICALL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8345947265625	2	546.835457	1091.65636	0.31522	0.00017237	-0.6936	-0.00037928	-0.37838	-0.00020691	546.8349933195029	23.867	0.60355	23.867	23.616	24.22	0					27	20	2	0	0	0	0.33508	1	3618	3618		3.5965	0	1	86983	+		38825	14164	22637	22638	46969	46969					0.11419935591038666
RPKTSSKWSAP	11	Unmodified	_RPKTSSKWSAP_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;UBR3|p.G1350Afs*47|1|0.06|ENSG00000144357|chr2:170007007-170007007|G/-|frameshift_variant	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.90863037109375	3	415.56305	1243.66732	-0.12736	-5.2925E-05	3.501	0.0014549	3.3737	0.001402	415.5646542676604	24.138	0.68776	24.138	23.829	24.517	0					37	23	2	0	0	0	0.32736	1	3622	3622		4.1166	0.27072	1	89240			38826	4577	22638	22639	46970	46970					0.05523293174655919
RPKTSSKWSAP	11	Unmodified	_RPKTSSKWSAP_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;UBR3|p.G1350Afs*47|1|0.06|ENSG00000144357|chr2:170007007-170007007|G/-|frameshift_variant	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.90863037109375	3	415.56305	1243.66732	0.13503	5.6112E-05	2.9418	0.0012225	3.0768	0.0012786	415.5644295833354	24.321	0.62631	24.283	23.965	24.591	-0.038927					33	21	2	0	0	0	0.32996	1	3684	3684		4.1166	0.27072	1	109270			38827	4577	22638	22639	46971	46971					0.05523293174655919
RPKTVRDTLL	10	Unmodified	_RPKTVRDTLL_					0	0	0		ENSG00000168264|ENST00000366609|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;IRF2BP2|p.P370Hfs*26|1|0.06|ENSG00000168264|chr1:234607792-234607793|-/TAGCAGACAAT|frameshift_variant	ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.866943359375	2	599.866954	1197.71936	0.3867	0.00023197	0.33015	0.00019804	0.71685	0.00043002	599.8668920787806	26.652	0.6255	26.652	26.41	27.035	0					50	21	3	0	0	0	0.36368	1	4418	4418		10.151	1.4052	1	203310			38828	6260	22639	22640	46972	46972					0.12840456588423876
RPKTVRDTLL	10	Unmodified	_RPKTVRDTLL_					0	0	0		ENSG00000168264|ENST00000366609|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;IRF2BP2|p.P370Hfs*26|1|0.06|ENSG00000168264|chr1:234607792-234607793|-/TAGCAGACAAT|frameshift_variant	ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.8670654296875	2	599.866954	1197.71936	0.4466	0.0002679	0.22944	0.00013763	0.67604	0.00040553	599.8668628830969	26.653	0.62221	26.614	26.402	27.024	-0.038671					47	21	3	0	0	0	0.38284	1	4420	4420		6.6304	2.1015	1	199510			38829	6260	22639	22640	46973	46973					0.12840456588423876
RPKTVRDTLL	10	Unmodified	_RPKTVRDTLL_					0	0	0		ENSG00000168264|ENST00000366609|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;IRF2BP2|p.P370Hfs*26|1|0.06|ENSG00000168264|chr1:234607792-234607793|-/TAGCAGACAAT|frameshift_variant	ENSG00000168264|ENST00000366609|IRF2BP2	ENSG00000168264|ENST00000366609|IRF2BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.8673706054688	2	599.866954	1197.71936	0.53909	0.00032338	0.33569	0.00020137	0.87478	0.00052475	599.8668531201258	26.722	0.50131	26.705	26.507	27.008	-0.017046					47	17	3	0	0	0	0.36368	2	4421	4421;4473		10.151	3.0488	1	227270			38830	6260	22639	22640	46974;46975	46974					0.12840456588423876
RPKVLQRGRV	10	Unmodified	_RPKVLQRGRV_					0	0	0		ENST00000491061.1_1_7:151805139-151814490:+|nuORF	ENST00000491061.1_1_7:151805139-151814490:+|nuORF	ENST00000491061.1_1_7:151805139-151814490:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2226257324219	3	403.594796	1207.76256	-0.46044	-0.00018583	0.18352	7.4067E-05	-0.27692	-0.00011176	403.594698129141	12.521	0.63971	12.424	12.148	12.788	-0.096607					39	21	3	0	0	0	0.32167	1	224	224		0.62683	0	1	83043			38831	11171	22640	22641	46976	46976					0.16698691156352652
RPKVPDQSV	9	Unmodified	_RPKVPDQSV_					0	0	0		ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2903442382812	2	513.290548	1024.56654	0.38476	0.0001975	-0.69078	-0.00035457	-0.30601	-0.00015707	513.2901274498814	21.353	1.0223	21.353	20.973	21.996	0					75	36	3	0	0	0	0.0044119	3	2816	2772;2816;2824		91.085	58.299	1	637280			38832	4303	22641	22642	46977;46978;46979	46978					0.055242611917947215
RPKVPDQSV	9	Unmodified	_RPKVPDQSV_					0	0	0		ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2898559570312	2	513.290548	1024.56654	0.25512	0.00013095	-0.53533	-0.00027478	-0.28021	-0.00014383	513.2901939248886	21.376	1.1679	21.326	21.036	22.204	-0.049377					92	41	4	0	0	0	0.0040516	1	2798	2798		93.938	59.536	1	786780			38833	4303	22641	22642	46980	46980					0.055242611917947215
RPKVPVLQL	9	Unmodified	_RPKVPVLQL_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000546481.1_1_12:57881846-57882986:+|nuORF;ENST00000550449.5_1_12:57881846-57883182:+|nuORF;ENST00000551842.5_1_12:57881873-57883359:+|nuORF;ENST00000553162.5_1_12:57881873-57883795:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7899169921875	2	525.345126	1048.6757	0.84353	0.00044314	-0.44684	-0.00023475	0.39669	0.0002084	525.344801719498	46.964	0.42469	46.964	46.789	47.214	0					20	14	2	0	0	0	0.20167	1	10611	10611		17.113	1.2657	1	459460			38834	6138	22642	22643	46981	46981					0.15330891881944808
RPKVPVLQL	9	Unmodified	_RPKVPVLQL_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000546481.1_1_12:57881846-57882986:+|nuORF;ENST00000550449.5_1_12:57881846-57883182:+|nuORF;ENST00000551842.5_1_12:57881873-57883359:+|nuORF;ENST00000553162.5_1_12:57881873-57883795:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3455810546875	2	525.345126	1048.6757	0.97417	0.00051177	-0.35188	-0.00018486	0.62229	0.00032692	525.3447169204418	46.986	0.57189	47.041	46.738	47.309	0.054375					27	19	2	0	0	0	0.057976	1	10605	10605		49.933	26.785	1	447730			38835	6138	22642	22643	46982	46982					0.15330891881944808
RPKVPVLQL	9	Unmodified	_RPKVPVLQL_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000546481.1_1_12:57881846-57882986:+|nuORF;ENST00000550449.5_1_12:57881846-57883182:+|nuORF;ENST00000551842.5_1_12:57881873-57883359:+|nuORF;ENST00000553162.5_1_12:57881873-57883795:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	525.345126	1048.6757	0.51452	0.0002703	0.35726	0.00018769	0.87179	0.00045799	525.8470611280746	46.97	0.53584	47.023	46.764	47.3	0.052574	0.013589	0.00052991	NaN	49.933	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387610			38836	6138	22642	22643							0.15330891881944808
RPKYAGYSF	9	Unmodified	_RPKYAGYSF_					0	0	0		nc|ENSG00000107643|P45983-3|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;ENST00000469110.1_1_10:49633920-49634247:+|nuORF;ENST00000471272.1_1_10:49633986-49635218:+|nuORF;ENST00000482840.1_1_10:49633920-49634652:+|nuORF	nc|ENSG00000107643|P45983-3|MAPK8	nc|ENSG00000107643|P45983-3|MAPK8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2947387695312	2	544.779816	1087.54508	-0.5654	-0.00030802	0.16983	9.2522E-05	-0.39556	-0.00021549	544.7797916464735	35.059	0.65255	35.059	34.839	35.492	0					47	23	3	0	0	0	0.20167	1	7000	7000		29.082	17.441	1	411680			38837	2137	22643	22644	46983	46983					0.00480876163078392
RPKYAGYSF	9	Unmodified	_RPKYAGYSF_					0	0	0		nc|ENSG00000107643|P45983-3|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;ENST00000469110.1_1_10:49633920-49634247:+|nuORF;ENST00000471272.1_1_10:49633986-49635218:+|nuORF;ENST00000482840.1_1_10:49633920-49634652:+|nuORF	nc|ENSG00000107643|P45983-3|MAPK8	nc|ENSG00000107643|P45983-3|MAPK8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2952270507812	2	544.779816	1087.54508	-0.47045	-0.00025629	0.029872	1.6274E-05	-0.44058	-0.00024002	544.7799051670356	35.036	0.66589	35.111	34.739	35.405	0.075306					51	23	3	0	0	0	0.18936	1	6995	6995		32.786	8.1118	1	337070			38838	2137	22643	22644	46984	46984					0.00480876163078392
RPKYAGYSF	9	Unmodified	_RPKYAGYSF_					0	0	0		nc|ENSG00000107643|P45983-3|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;ENSG00000107643|ENST00000374189|MAPK8;ENST00000469110.1_1_10:49633920-49634247:+|nuORF;ENST00000471272.1_1_10:49633986-49635218:+|nuORF;ENST00000482840.1_1_10:49633920-49634652:+|nuORF	nc|ENSG00000107643|P45983-3|MAPK8	nc|ENSG00000107643|P45983-3|MAPK8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2954711914062	2	544.779816	1087.54508	-0.41115	-0.00022399	0.31253	0.00017026	-0.09862	-5.3726E-05	544.7799528436423	35.006	0.63461	35.083	34.755	35.39	0.077377					46	22	3	0	0	0	0.17696	1	6961	6961		29.841	12.898	1	321750			38839	2137	22643	22644	46985	46985					0.00480876163078392
RPKYPGIKF	9	Unmodified	_RPKYPGIKF_					0	0	0		ENST00000397072.7_1_5:179665329-179706839:-|nuORF;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;ENSG00000050748|ENST00000452135|MAPK9	ENST00000397072.7_1_5:179665329-179706839:-|nuORF	ENST00000397072.7_1_5:179665329-179706839:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3301391601562	2	553.329476	1104.6444	0.24843	0.00013747	1.6331	0.00090366	1.8816	0.0010411	553.329915058329	33.177	0.94231	33.177	32.811	33.753	0					85	33	4	0	0	0	0.047483	2	6426	6426;6448		53.833	17.706	1	399450			38840	665	22644	22645	46986;46987	46986					0.09626318847836046
RPKYPGIKF	9	Unmodified	_RPKYPGIKF_					0	0	0		ENST00000397072.7_1_5:179665329-179706839:-|nuORF;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;ENSG00000050748|ENST00000452135|MAPK9	ENST00000397072.7_1_5:179665329-179706839:-|nuORF	ENST00000397072.7_1_5:179665329-179706839:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3301391601562	2	553.329476	1104.6444	0.32189	0.00017811	1.3584	0.00075162	1.6802	0.00092973	553.3297946393742	33.052	0.88075	33.108	32.758	33.639	0.055309					82	31	4	0	0	0	0.063853	1	6396	6396		47.749	7.799	1	560970			38841	665	22644	22645	46988	46988					0.09626318847836046
RPKYPGIKF	9	Unmodified	_RPKYPGIKF_					0	0	0		ENST00000397072.7_1_5:179665329-179706839:-|nuORF;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;ENSG00000050748|ENST00000452135|MAPK9	ENST00000397072.7_1_5:179665329-179706839:-|nuORF	ENST00000397072.7_1_5:179665329-179706839:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3305053710938	2	553.329476	1104.6444	0.21869	0.00012101	1.5422	0.00085335	1.7609	0.00097436	553.3299288612404	33.095	0.82735	33.149	32.818	33.645	0.054371					78	29	4	0	0	0	0.063853	1	6409	6409		47.749	11.622	1	476040			38842	665	22644	22645	46989	46989					0.09626318847836046
RPKYQFLSL	9	Unmodified	_RPKYQFLSL_					0	0	0		ENSG00000105928|ENST00000645220|GSDME;ENST00000473990.1_1_7:24784179-24789393:-|nuORF;DFNA5|p.L224Yfs*3|1|0.17|ENSG00000105928|chr7:24717280-24717280|A/-|frameshift_variant;ENST00000493723.5_1_7:24756537-24789393:-|nuORF	ENSG00000105928|ENST00000645220|GSDME	ENSG00000105928|ENST00000645220|GSDME	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.3326416015625	2	576.332216	1150.64988	0.58338	0.00033622	-0.099895	-5.7573E-05	0.48348	0.00027865	576.3321051458034	50.444	0.86752	50.444	50.138	51.006	0					89	31	4	0	0	0	0.0054984	2	11675	11675;11721		86.332	43.479	1	2353200			38843	2036	22645	22646	46990;46991	46990					0.08057997639662062
RPKYYGREF	9	Unmodified	_RPKYYGREF_					0	0	0		ENSG00000128656|ENST00000409900|CHN1;nc|ENSG00000128656|P15882-3|CHN1;ENST00000488080.5_1_2:175711684-175870060:-|nuORF;ENSG00000106069|ENST00000222792|CHN2;nc|ENSG00000106069|P52757-9|CHN2	ENSG00000128656|ENST00000409900|CHN1;ENSG00000106069|ENST00000222792|CHN2	ENSG00000128656|ENST00000409900|CHN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.88037109375	3	405.88049	1214.61964	-0.15302	-6.2106E-05	0.012718	5.162E-06	-0.1403	-5.6944E-05	405.8805401126969	24.302	0.81397	24.302	24.058	24.872	0					50	27	2	0	0	0	0.24787	1	3742	3742		10.899	8.0557	1	125340			38844	3386;2054	22646	22647	46992	46992					0.02091638974457055
RPKYYGREF	9	Unmodified	_RPKYYGREF_					0	0	0		ENSG00000128656|ENST00000409900|CHN1;nc|ENSG00000128656|P15882-3|CHN1;ENST00000488080.5_1_2:175711684-175870060:-|nuORF;ENSG00000106069|ENST00000222792|CHN2;nc|ENSG00000106069|P52757-9|CHN2	ENSG00000128656|ENST00000409900|CHN1;ENSG00000106069|ENST00000222792|CHN2	ENSG00000128656|ENST00000409900|CHN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.88037109375	3	405.88049	1214.61964	-0.10471	-4.25E-05	0.39892	0.00016191	0.29421	0.00011941	405.8806429164709	24.568	1.0228	24.496	24.179	25.202	-0.072559					54	35	2	0	0	0	0.22101	1	3786	3786		20.581	12.636	1	162580			38845	3386;2054	22646	22647	46993	46993					0.02091638974457055
RPKYYGREF	9	Unmodified	_RPKYYGREF_					0	0	0		ENSG00000128656|ENST00000409900|CHN1;nc|ENSG00000128656|P15882-3|CHN1;ENST00000488080.5_1_2:175711684-175870060:-|nuORF;ENSG00000106069|ENST00000222792|CHN2;nc|ENSG00000106069|P52757-9|CHN2	ENSG00000128656|ENST00000409900|CHN1;ENSG00000106069|ENST00000222792|CHN2	ENSG00000128656|ENST00000409900|CHN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.8806457519531	3	405.88049	1214.61964	-0.23753	-9.6408E-05	0.78385	0.00031815	0.54632	0.00022174	405.8807463567637	24.533	0.66049	24.495	24.223	24.884	-0.038179					49	22	3	0	0	0	0.28624	1	3772	3772		10.899	3.4219	1	153250			38846	3386;2054	22646	22647	46994	46994					0.02091638974457055
RPLAKTCF	8	Unmodified	_RPLAKTCF_					0	0	0		ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2;ENST00000591718.1_1_19:55966993-55972941:-|nuORF	ENSG00000063241|ENST00000425675|ISOC2	ENSG00000063241|ENST00000425675|ISOC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.260009765625	2	468.260205	934.505857	-0.061797	-2.8937E-05	-0.75927	-0.00035554	-0.82107	-0.00038447	468.25966880517433	15.417	1.0755	15.353	14.898	15.973	-0.064413					71	36	3	0	0	0	0.42758	1	1041	1041		13.508	0.97634	1	214430			38847	773	22647	22648	46995	46995					0.0359845260786642
RPLDARTY	8	Unmodified	_RPLDARTY_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1	REV__ENSG00000173517|ENST00000682557|PEAK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2823791503906	2	496.269616	990.524678	0.42104	0.00020895	-0.47841	-0.00023742	-0.057379	-2.8475E-05	496.26928671408007	19.684	0.36448	19.629	19.452	19.816	-0.055693					21	12	2	0	0	0	0.34414	1	2254	2254		2.0598	0.21551	1	46825	+		38848	17784	22648	22649	46996	46996					0.02903705503274523
RPLDARTY	8	Unmodified	_RPLDARTY_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1	REV__ENSG00000173517|ENST00000682557|PEAK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	496.269616	990.524678	0.25857	0.00012832	-0.28958	-0.00014371	-0.031008	-1.5388E-05	496.26918514383465	19.576	0.39432	19.576	19.401	19.796	0	-0.047687	-8.4594E-05	NaN	2.0598	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32253	+		38849	17784	22648	22649							0.02903705503274523
RPLDVADTL	9	Unmodified	_RPLDVADTL_					0	0	0			REV__ENSG00000160999|ENST00000444095|SH2B2	REV__ENSG00000160999|ENST00000444095|SH2B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8107604980469	2	500.277106	998.53966	0.49178	0.00024603	-1.3409	-0.00067084	-0.84916	-0.00042481	500.27661268577316	21.52	0.4431	21.419	21.214	21.657	-0.10034					25	15	2	0	0	0	0.24688	1	2895	2895		10.074	0.6908	1	55527	+		38850	16929	22649	22650	46997	46997					0.04033152580609567
RPLEFWRLDYW	11	Unmodified	_RPLEFWRLDYW_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7640991210938	3	527.605137	1579.79358	0.4516	0.00023827	-1.6751	-0.00088377	-1.2235	-0.0006455	527.6042229745034	38.07	0.53804	38.168	37.927	38.465	0.097527					28	18	2	0	0	0	0.33352	1	7857	7857		0.08335	0.08335	1	315870			38851	8091	22650	22651	46998	46998					0.026877996799385073
RPLEGAGGKRT	11	Unmodified	_RPLEGAGGKRT_					0	0	0			REV__ENST00000575686.1_1_16:74729594-74734685:-|nuORF	REV__ENST00000575686.1_1_16:74729594-74734685:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3262939453125	2	571.325454	1140.63635	0.38241	0.00021848	0.20835	0.00011904	0.59077	0.00033752	571.3259951135288	93.239	0.52133	93.238	92.954	93.476	-0.00051117					112	52	3	0	0	0	0.46655	1	24868	24868		2.4985	0.43874	1	210300	+		38852	22444	22651	22652	46999	46999					0.07166139860419207
RPLEGAGGKRT	11	Unmodified	_RPLEGAGGKRT_					0	0	0			REV__ENST00000575686.1_1_16:74729594-74734685:-|nuORF	REV__ENST00000575686.1_1_16:74729594-74734685:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	571.325454	1140.63635	0.32264	0.00018433	-0.20037	-0.00011448	0.12227	6.9857E-05	571.3259403844386	93.142	0.2959	93.231	92.98	93.276	0.089195	-0.0034307	-0.00026258	NaN	2.4985	56	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129660	+		38853	22444	22651	22652							0.07166139860419207
RPLEGKKSL	9	Unmodified	_RPLEGKKSL_					0	0	0		nc|ENSG00000198000|Q76FK4-2|NOL8;nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8	nc|ENSG00000198000|Q76FK4-2|NOL8	nc|ENSG00000198000|Q76FK4-2|NOL8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2984008789062	2	514.316566	1026.61858	-0.042603	-2.1912E-05	-0.031401	-1.615E-05	-0.074005	-3.8062E-05	514.3164845087248	24.549	1.0926	24.514	24.283	25.375	-0.034557					58	37	2	0	0	0	0.26031	1	3968	3968		3.5965	0	1	136450			38854	8023	22652	22653	47000	47000					0.10633424605566688
RPLEGKKSL	9	Unmodified	_RPLEGKKSL_					0	0	0		nc|ENSG00000198000|Q76FK4-2|NOL8;nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8	nc|ENSG00000198000|Q76FK4-2|NOL8	nc|ENSG00000198000|Q76FK4-2|NOL8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	514.316566	1026.61858	0.19589	0.00010075	0.070126	3.6067E-05	0.26602	0.00013682	514.3164745567466	24.602	1.0573	24.54	24.217	25.274	-0.062593	0.016177	8.7912E-05	NaN	3.5965	57	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134780			38855	8023	22652	22653							0.10633424605566688
RPLELRDLL	9	Unmodified	_RPLELRDLL_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8211669921875	2	562.842948	1123.67134	0.3953	0.00022249	-1.6988	-0.00095614	-1.3035	-0.00073364	562.841740796236	58.125	0.52335	58.211	57.945	58.468	0.085617					40	18	3	0	0	0	0.1303	1	14072	14072		49.527	25.507	1	339820			38856	7301	22653	22654	47001	47001					0.11445382668375714
RPLELRDLL	9	Unmodified	_RPLELRDLL_					0	0	0		ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	ENSG00000182578|ENST00000675795|CSF1R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.821044921875	2	562.842948	1123.67134	0.63679	0.00035841	-1.4067	-0.00079176	-0.76993	-0.00043335	562.8419498906945	58.494	0.40613	58.48	58.278	58.684	-0.014267					25	14	2	0	0	0	0.16039	1	14203	14203		35.612	19.463	1	410290			38857	7301	22653	22654	47002	47002					0.11445382668375714
RPLERGSELLE	11	Unmodified	_RPLERGSELLE_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.2377014160156	3	433.573614	1297.69901	-0.15369	-6.6638E-05	-0.70193	-0.00030434	-0.85562	-0.00037098	433.5733013153394	27.207	0.75793	27.196	26.797	27.555	-0.011562					43	26	2	0	0	0	0.33056	1	4489	4489		8.7518	6.4991	1	310580	+		38858	15675	22654	22655	47003	47003					0.062072411379631376
RPLETRVTL	9	Unmodified	_RPLETRVTL_					0	0	0		ENST00000529652.1_1_17:80551717-80553973:+|nuORF	ENST00000529652.1_1_17:80551717-80553973:+|nuORF	ENST00000529652.1_1_17:80551717-80553973:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.827880859375	2	542.827298	1083.64004	1.0537	0.00057199	-0.52229	-0.00028351	0.53143	0.00028848	542.8272498585605	33.887	0.72905	33.954	33.676	34.405	0.06636					61	25	3	0	0	0	0.09758	1	6639	6639		38.615	0	1	871680			38859	11604	22655	22656	47004	47004					0.10156809634258934
RPLFCCSK	8	Unmodified	_RPLFCCSK_					0	0	0			REV__nc|ENSG00000002919|Q9Y5W9-2|SNX11	REV__nc|ENSG00000002919|Q9Y5W9-2|SNX11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.6939697265625	2	477.238415	952.462278	0.054011	2.5776E-05	-0.5112	-0.00024396	-0.45719	-0.00021819	477.23830222487965	16.521	0.31025	16.521	16.349	16.659	0					12	10	2	0	0	0	0.34414	1	1327	1327		2.0598	0	1	25364	+		38860	13321	22656	22657	47005	47005					-0.015854801609293645
RPLFCCSK	8	Unmodified	_RPLFCCSK_					0	0	0			REV__nc|ENSG00000002919|Q9Y5W9-2|SNX11	REV__nc|ENSG00000002919|Q9Y5W9-2|SNX11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	477.238415	952.462278	0.048876	2.3326E-05	-0.7609	-0.00036313	-0.71203	-0.00033981	477.23805853062294	16.67	0.27267	16.556	16.395	16.667	-0.11434	0.01771	-5.2467E-05	NaN	2.0598	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29738	+		38861	13321	22656	22657							-0.015854801609293645
RPLGGFAR	8	Unmodified	_RPLGGFAR_					0	0	0			REV__ENST00000485924.2_1_1:155295438-155296706:+|nuORF	REV__ENST00000485924.2_1_1:155295438-155296706:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.8945007324219	2	437.256311	872.49807	0.024648	1.0778E-05	-0.11014	-4.8159E-05	-0.08549	-3.7381E-05	437.25606553903975	19.619	0.7806	19.503	19.26	20.04	-0.11592					56	26	3	0	0	0	0.34167	1	2284	2284		11.64	0	1	114670	+		38862	20337	22657	22658	47006	47006					0.056720614025948635
RPLGNILVA	9	Unmodified	_RPLGNILVA_					0	0	0			REV__nc|ENSG00000160179|P45844-7|ABCG1	REV__nc|ENSG00000160179|P45844-7|ABCG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.8066711425781	2	476.800552	951.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.686	1	29.698	29.198	30.198	0.012266								0	0	0	0.22065	1	5342	5342		15.847	0	1		+		38863	16882	22658	22659	47007	47007					0.10882056922412175
RPLGTRLGF	9	Unmodified	_RPLGTRLGF_					0	0	0		ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5;nc|ENSG00000136521|O43674-2|NDUFB5	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.816162109375	2	508.803626	1015.5927	0.07853	3.9956E-05	-0.044248	-2.2514E-05	0.034282	1.7443E-05	508.8035292450899	38.491	0.75214	38.491	38.092	38.844	0					88	26	4	0	0	0	0.20679	1	8128	8128		22.658	3.4011	1	2262100			38864	3979	22659	22660	47008	47008					0.08552575153930775
RPLGTRLGF	9	Unmodified	_RPLGTRLGF_					0	0	0		ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5;nc|ENSG00000136521|O43674-2|NDUFB5	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8035888671875	2	508.803626	1015.5927	0.32798	0.00016688	-0.31723	-0.00016141	0.010758	5.4739E-06	508.8033598795268	38.42	0.75941	38.511	38.127	38.887	0.090881					93	27	4	0	0	0	0.12279	2	7974	7974;8106		34.932	14.478	1	2056200			38865	3979	22659	22660	47009;47010	47009					0.08552575153930775
RPLGTRLGF	9	Unmodified	_RPLGTRLGF_					0	0	0		ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5;nc|ENSG00000136521|O43674-2|NDUFB5	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8034973144531	2	508.803626	1015.5927	0.33098	0.00016841	-0.27028	-0.00013752	0.060699	3.0884E-05	508.8033869908585	38.408	0.83088	38.506	38.007	38.838	0.097527					94	29	4	0	0	0	0.11018	1	8005	8005		53.404	32.95	1	1961400			38866	3979	22659	22660	47011	47011					0.08552575153930775
RPLHGGAPTL	10	Unmodified	_RPLHGGAPTL_					0	0	0			REV__ENSG00000188620|ENST00000357878|HMX3	REV__ENSG00000188620|ENST00000357878|HMX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.22735595703125	2	509.793258	1017.57196	0.19219	9.7976E-05	0.27196	0.00013864	0.46415	0.00023662	509.79334022449524	28.573	0.76437	28.573	28.241	29.006	0					51	26	3	0	0	0	0.31691	1	4957	4957		9.3831	0	1	400400	+		38867	18560	22660	22661	47012	47012					0.06387984774289635
RPLHPWRAG	9	Unmodified	_RPLHPWRAG_					0	0	0			REV__ENST00000525616.1_1_19:50187319-50188102:+|nuORF	REV__ENST00000525616.1_1_19:50187319-50188102:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3065185546875	2	545.306867	1088.59918	0.43426	0.00023681	-1.5675	-0.00085476	-1.1332	-0.00061795	545.3061054723423	22.612	0.51586	22.567	22.409	22.925	-0.044867					28	17	2	0	0	0	0.31417	1	3212	3212		6.7232	1.4925	1	74366	+		38868	21149	22661	22662	47013	47013					0.05842513105312719
RPLIYPHWF	9	Unmodified	_RPLIYPHWF_					0	0	0		HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|344|2|anti-sense	HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|344|2|anti-sense	HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|344|2|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2391357421875	3	410.225709	1227.6553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.379	1	36.461	35.961	36.961	0.082355								0	0	0	0.21726	1	7385	7385		11.495	6.4472	1				38869	12411	22662	22663	47014	47014					0.050577212221014634
RPLKPLSPL	9	Unmodified	_RPLKPLSPL_					0	0	0		ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2349853515625	2	510.831852	1019.64915	0.42895	0.00021912	-0.021141	-1.08E-05	0.4078	0.00020832	510.8317333445213	36.22	0.38797	36.302	36.233	36.621	0.082355					20	13	2	0	0	0	0.24688	1	7393	7393		14.838	4.0143	1	252160			38870	3123	22663	22664	47015	47015					0.14011202990604943
RPLKPLSPL	9	Unmodified	_RPLKPLSPL_					0	0	0		ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2351379394531	2	510.831852	1019.64915	0.63038	0.00032202	0.032696	1.6702E-05	0.66308	0.00033872	510.8318181014888	36.25	0.43607	36.337	36.244	36.68	0.08625					20	14	2	0	0	0	0.25202	1	7388	7388		10.824	0	1	206350			38871	3123	22663	22664	47016	47016					0.14011202990604943
RPLLDRKLH	9	Unmodified	_RPLLDRKLH_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.2423706054688	2	574.356557	1146.69856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.608	1	22.563	22.063	23.063	-0.044867								0	0	0	0.2672	1	3194	3194		0.52476	0	1				38872	1267	22664	22665	47017	47017					0.13107910999406158
RPLLKAITA	9	Unmodified	_RPLLKAITA_					0	0	0		ENST00000484427.5_1_20:47835892-47850293:+|nuORF;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27	ENST00000484427.5_1_20:47835892-47850293:+|nuORF	ENST00000484427.5_1_20:47835892-47850293:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.8241882324219	2	491.824027	981.633501	0.62193	0.00030588	-0.053112	-2.6122E-05	0.56881	0.00027976	491.8239575985532	33.717	0.82101	33.717	33.456	34.277	0					57	29	3	0	0	0	0.18208	1	6583	6583		26.268	5.8145	1	437260			38873	3149	22665	22666	47018	47018					0.14194916473536523
RPLLKAITA	9	Unmodified	_RPLLKAITA_					0	0	0		ENST00000484427.5_1_20:47835892-47850293:+|nuORF;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27	ENST00000484427.5_1_20:47835892-47850293:+|nuORF	ENST00000484427.5_1_20:47835892-47850293:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.82403564453125	2	491.824027	981.633501	0.82465	0.00040558	-0.031751	-1.5616E-05	0.7929	0.00038997	491.82393558666456	33.614	0.77111	33.68	33.432	34.203	0.06636					61	27	3	0	0	0	0.13748	1	6534	6534		32.786	12.332	1	397030			38874	3149	22665	22666	47019	47019					0.14194916473536523
RPLLKAITA	9	Unmodified	_RPLLKAITA_					0	0	0		ENST00000484427.5_1_20:47835892-47850293:+|nuORF;ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27	ENST00000484427.5_1_20:47835892-47850293:+|nuORF	ENST00000484427.5_1_20:47835892-47850293:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.8243713378906	2	491.824027	981.633501	0.18123	8.9132E-05	0.67557	0.00033226	0.8568	0.0004214	491.82430993560916	33.624	0.79408	33.691	33.415	34.209	0.066704					65	28	3	0	0	0	0.047483	1	6545	6545		53.833	17.789	1	432680			38875	3149	22665	22666	47020	47020					0.14194916473536523
RPLLLSALHM	10	Unmodified	_RPLLLSALHM_					0	0	0		nc|ENSG00000100036|Q6ICL7-2|SLC35E4;ENSG00000100036|ENST00000343605|SLC35E4	nc|ENSG00000100036|Q6ICL7-2|SLC35E4	nc|ENSG00000100036|Q6ICL7-2|SLC35E4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8429565429688	2	575.841894	1149.66923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.81	1	115.83	115.33	116.33	0.018738								0	0	0	0.38126	1	30073	30073		1.6526	0	1				38876	1523	22666	22667	47021	47021					0.10038630658891634
RPLLLSALHM	10	Unmodified	_RPLLLSALHM_					0	0	0		nc|ENSG00000100036|Q6ICL7-2|SLC35E4;ENSG00000100036|ENST00000343605|SLC35E4	nc|ENSG00000100036|Q6ICL7-2|SLC35E4	nc|ENSG00000100036|Q6ICL7-2|SLC35E4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8427124023438	2	575.841894	1149.66923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.15	1	116.17	115.67	116.67	0.020988								0	0	0	0.38126	1	30144	30144		1.6526	0	1				38877	1523	22666	22667	47022	47022					0.10038630658891634
RPLLLSALHM	10	Unmodified	_RPLLLSALHM_					0	0	0		nc|ENSG00000100036|Q6ICL7-2|SLC35E4;ENSG00000100036|ENST00000343605|SLC35E4	nc|ENSG00000100036|Q6ICL7-2|SLC35E4	nc|ENSG00000100036|Q6ICL7-2|SLC35E4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8428955078125	2	575.841894	1149.66923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.9	1	119.93	119.43	120.43	0.027756								0	0	0	0.38126	1	30995	30995		1.6526	0	1				38878	1523	22666	22667	47023	47023					0.10038630658891634
RPLLLSLL	8	Unmodified	_RPLLLSLL_					0	0	0		ENSG00000179580|ENST00000569714|RNF151	ENSG00000179580|ENST00000569714|RNF151	ENSG00000179580|ENST00000569714|RNF151	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2569885253906	2	462.81567	923.616788	0.053027	2.4542E-05	-0.052583	-2.4336E-05	0.00044367	2.0534E-07	462.8155513599101	75.494	0.72282	75.546	75.244	75.967	0.052368					54	26	3	0	0	0	0.34313	1	19480	19480		6.7232	0	1	429270			38879	7130	22667	22668	47024	47024					0.15192415587614505
RPLLLSLL	8	Unmodified	_RPLLLSLL_					0	0	0		ENSG00000179580|ENST00000569714|RNF151	ENSG00000179580|ENST00000569714|RNF151	ENSG00000179580|ENST00000569714|RNF151	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	462.81567	923.616788	-0.14985	-6.9353E-05	0.039515	1.8288E-05	-0.11034	-5.1065E-05	462.8156297864681	75.558	0.67083	75.558	75.206	75.877	0	0.0084679	0.00012655	NaN	15.847	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	481410			38880	7130	22667	22668							0.15192415587614505
RPLLLSLL	8	Unmodified	_RPLLLSLL_					0	0	0		ENSG00000179580|ENST00000569714|RNF151	ENSG00000179580|ENST00000569714|RNF151	ENSG00000179580|ENST00000569714|RNF151	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	462.81567	923.616788	0.28224	0.00013062	-0.32565	-0.00015072	-0.043412	-2.0092E-05	462.8154184928988	75.575	0.56337	75.543	75.318	75.881	-0.031487	-0.0057301	-0.00021146	NaN	15.847	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405000			38881	7130	22667	22668							0.15192415587614505
RPLLRRLK	8	Unmodified	_RPLLRRLK_					0	0	0		ENST00000568925.1_1_16:77246444-77246825:+|nuORF	ENST00000568925.1_1_16:77246444-77246825:+|nuORF	ENST00000568925.1_1_16:77246444-77246825:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8009033203125	2	526.364185	1050.71382	0.55296	0.00029106	-3.5867	-0.0018879	-3.0338	-0.0015969	526.3624250163911	35.772	0.35342	35.854	35.682	36.036	0.082355					18	12	2	0	0	0	0.34437	1	7194	7194		0.69038	0	1	104380			38882	12006	22668	22669	47025	47025					0.1904882258725138
RPLLRRRLPAA	11	Unmodified	_RPLLRRRLPAA_					0	0	0		ENST00000453168.5_1_3:31574222-31574351:+|nuORF	ENST00000453168.5_1_3:31574222-31574351:+|nuORF	ENST00000453168.5_1_3:31574222-31574351:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.2893371582031	3	440.289595	1317.84696	-0.12179	-5.3623E-05	-0.13763	-6.0597E-05	-0.25942	-0.00011422	440.28951348073974	27.544	0.91247	27.544	27.294	28.207	0					83	31	4	0	0	0	0.3322	1	4734	4734		4.7159	2.0847	1	396420			38883	10665	22669	22670	47026	47026					0.20074641973133112
RPLLRRRLPAA	11	Unmodified	_RPLLRRRLPAA_					0	0	0		ENST00000453168.5_1_3:31574222-31574351:+|nuORF	ENST00000453168.5_1_3:31574222-31574351:+|nuORF	ENST00000453168.5_1_3:31574222-31574351:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.6239013671875	3	440.289595	1317.84696	-0.19972	-8.7933E-05	-0.018696	-8.2315E-06	-0.21841	-9.6165E-05	440.2895653494067	27.516	0.85347	27.495	27.242	28.095	-0.021412					74	29	3	0	0	0	0.43198	1	4673	4673		7.0371	0.41363	1	366680			38884	10665	22669	22670	47027	47027					0.20074641973133112
RPLNITSL	8	Unmodified	_RPLNITSL_					0	0	0		nc|ENSG00000078043|O75928-3|PIAS2;ENST00000592011.5_1_18:44416318-44500057:-|nuORF;ENST00000590127.5_1_18:44407908-44497416:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;ENSG00000078043|ENST00000585916|PIAS2;ENST00000589819.1_1_18:44426648-44444164:-|nuORF	nc|ENSG00000078043|O75928-3|PIAS2	nc|ENSG00000078043|O75928-3|PIAS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.27685546875	2	457.276909	912.539266	0.14121	6.4571E-05	-0.2095	-9.5798E-05	-0.068288	-3.1227E-05	457.2767868870599	42.27	1.1008	42.355	42.034	43.135	0.085197					99	39	4	0	0	0	0.077335	1	9263	9263		65.235	0	1	3054100			38885	1100	22670	22671	47028	47028					0.07949777651424483
RPLNVRVAL	9	Unmodified	_RPLNVRVAL_					0	0	0		nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-7|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF	nc|ENSG00000143537|Q13444-2|ADAM15	nc|ENSG00000143537|Q13444-2|ADAM15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.3325805664062	2	519.33255	1036.65055	0.42797	0.00022226	-0.33081	-0.0001718	0.097161	5.0459E-05	519.3322652525953	40.175	0.80306	40.175	39.831	40.634	0					66	28	3	0	0	0	0.07432	1	8559	8559		43.858	19.838	1	920680			38886	4526	22671	22672	47029	47029					0.13368837079360674
RPLNVRVAL	9	Unmodified	_RPLNVRVAL_					0	0	0		nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-7|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF	nc|ENSG00000143537|Q13444-2|ADAM15	nc|ENSG00000143537|Q13444-2|ADAM15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3323974609375	2	519.33255	1036.65055	0.56112	0.00029141	-0.43132	-0.000224	0.1298	6.7412E-05	519.3322278004925	39.998	0.75369	40.09	39.803	40.557	0.09267					63	26	3	0	0	0	0.01083	1	8511	8511		78.149	32.128	1	839990			38887	4526	22671	22672	47030	47030					0.13368837079360674
RPLNVRVAL	9	Unmodified	_RPLNVRVAL_					0	0	0		nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-7|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF	nc|ENSG00000143537|Q13444-2|ADAM15	nc|ENSG00000143537|Q13444-2|ADAM15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.3325805664062	2	519.33255	1036.65055	0.40716	0.00021145	-0.34223	-0.00017773	0.064933	3.3722E-05	519.3322752339516	39.946	0.7692	40.046	39.736	40.505	0.099407					66	27	3	0	0	0	0.079752	1	8479	8479		41.84	24.727	1	960990			38888	4526	22671	22672	47031	47031					0.13368837079360674
RPLPKKHVE	9	Unmodified	_RPLPKKHVE_					0	0	0		nc|ENSG00000236438|C9JC47|FAM157A;nc|ENSG00000233013|P0CG42|FAM157B;nc|ENSG00000260528|P0CG43|FAM157C	nc|ENSG00000236438|C9JC47|FAM157A	nc|ENSG00000236438|C9JC47|FAM157A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.3383178710938	2	552.337833	1102.66111	0.27935	0.0001543	0.092618	5.1156E-05	0.37197	0.00020545	552.3378300962105	24.245	1.0447	24.245	23.857	24.902	0					92	34	4	0	0	0	0.20626	4	3637	3637;3683;3726;3773		22.736	6.5872	1	409690			38889	12956	22672	22673	47032;47033;47034;47035	47032					0.11388819733792843
RPLPKKHVE	9	Unmodified	_RPLPKKHVE_					0	0	0		nc|ENSG00000236438|C9JC47|FAM157A;nc|ENSG00000233013|P0CG42|FAM157B;nc|ENSG00000260528|P0CG43|FAM157C	nc|ENSG00000236438|C9JC47|FAM157A	nc|ENSG00000236438|C9JC47|FAM157A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.3380737304688	2	552.337833	1102.66111	0.39307	0.00021711	0.064334	3.5534E-05	0.45741	0.00025264	552.3378319987331	24.408	1.077	24.335	23.905	24.982	-0.072559					95	33	4	0	0	0	0.24467	1	3800	3800		17.113	2.7075	1	413240			38890	12956	22672	22673	47036	47036					0.11388819733792843
RPLPKKHVE	9	Unmodified	_RPLPKKHVE_					0	0	0		nc|ENSG00000236438|C9JC47|FAM157A;nc|ENSG00000233013|P0CG42|FAM157B;nc|ENSG00000260528|P0CG43|FAM157C	nc|ENSG00000236438|C9JC47|FAM157A	nc|ENSG00000236438|C9JC47|FAM157A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.3380737304688	2	552.337833	1102.66111	0.20147	0.00011128	0.15974	8.8228E-05	0.3612	0.00019951	552.3379076134128	24.44	1.0093	24.401	24.081	25.091	-0.038927					89	34	4	0	0	0	0.24467	2	3796	3697;3796		17.113	5.6182	1	455310			38891	12956	22672	22673	47037;47038	47038					0.11388819733792843
RPLPMEQARY	10	Unmodified	_RPLPMEQARY_					0	0	0		nc|ENSG00000198758|Q8TE67-2|EPS8L3;ENSG00000198758|ENST00000361965|EPS8L3;nc|ENSG00000198758|Q8TE67-3|EPS8L3	nc|ENSG00000198758|Q8TE67-2|EPS8L3	nc|ENSG00000198758|Q8TE67-2|EPS8L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5008239746094	3	420.888768	1259.64448	-0.36408	-0.00015324	0.41616	0.00017516	0.052076	2.1918E-05	420.8886580882188	13.917	0.29203	13.917	13.794	14.086	0					16	9	2	0	0	0	0.32139	1	612	612		0.56317	0	1	85941			38892	8120	22673	22674	47039	47039					0.025039507855353804
RPLPMEQARY	10	Unmodified	_RPLPMEQARY_					0	0	0		nc|ENSG00000198758|Q8TE67-2|EPS8L3;ENSG00000198758|ENST00000361965|EPS8L3;nc|ENSG00000198758|Q8TE67-3|EPS8L3	nc|ENSG00000198758|Q8TE67-2|EPS8L3	nc|ENSG00000198758|Q8TE67-2|EPS8L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5576477050781	3	420.888768	1259.64448	-0.28246	-0.00011888	0.0843	3.5481E-05	-0.19816	-8.3403E-05	420.88875659794456	14.026	0.48987	13.96	13.831	14.32	-0.066068					22	16	2	0	0	0	0.32054	1	591	591		1.5923	0.26264	1	98916			38893	8120	22673	22674	47040	47040					0.025039507855353804
RPLPVSRLVSL	11	Unmodified	_RPLPVSRLVSL_					0	0	0		ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1;ENST00000526443.5_1_11:14535901-14541492:-|nuORF;ENST00000528307.5_1_11:14535901-14541893:-|nuORF	ENSG00000129084|ENST00000396394|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.9310302734375	3	412.931073	1235.77139	0.0097585	4.0296E-06	0.022549	9.3111E-06	0.032307	1.3341E-05	412.9309987148828	52.219	1.0071	52.218	51.71	52.717	-0.00080872					65	36	3	0	0	0	0.23269	1	12246	12246		28.271	19.519	1	448910			38894	3409	22674	22675	47041	47041					0.16293620002170428
RPLPVSRLVSL	11	Unmodified	_RPLPVSRLVSL_					0	0	0		ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1;ENST00000526443.5_1_11:14535901-14541492:-|nuORF;ENST00000528307.5_1_11:14535901-14541893:-|nuORF	ENSG00000129084|ENST00000396394|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	412.931073	1235.77139	-0.083008	-3.4277E-05	0.05826	2.4057E-05	-0.024748	-1.0219E-05	412.93097131389226	52.097	0.65237	52.097	51.702	52.354	0	-0.036195	0.00017174	NaN	28.271	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462190			38895	3409	22674	22675							0.16293620002170428
RPLPVSRLVSL	11	Unmodified	_RPLPVSRLVSL_					0	0	0		ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1;ENST00000526443.5_1_11:14535901-14541492:-|nuORF;ENST00000528307.5_1_11:14535901-14541893:-|nuORF	ENSG00000129084|ENST00000396394|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	412.931073	1235.77139	0.28387	0.00011722	-0.37485	-0.00015479	-0.090976	-3.7567E-05	412.9308251761698	52.035	1.1672	52.085	51.817	52.984	0.050575	-0.048469	-0.00036479	NaN	28.271	63	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	434520			38896	3409	22674	22675							0.16293620002170428
RPLRLQSGSW	10	Unmodified	_RPLRLQSGSW_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8007202148438	2	600.335821	1198.65709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.043	1	86.034	85.534	86.534	-0.0090027								0	0	0	0.37664	1	22612	22612		3.5965	1.098	1		+		38897	14606	22675	22676	47042	47042					0.06570730240082412
RPLRNGLS	8	Unmodified	_RPLRNGLS_					0	0	0			REV__ENST00000421422.1_2_20:39813596-39813806:-|nuORF	REV__ENST00000421422.1_2_20:39813596-39813806:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7666015625	2	456.772326	911.530098	-0.066351	-3.0307E-05	2.1977	0.0010039	2.1314	0.00097355	456.7733331163079	15.652	0.31504	15.542	15.408	15.723	-0.10981					27	10	4	0	0	0	0.34294	1	1055	1055		7.2892	1.0834	1	79264	+		38898	20867	22676	22677	47043	47043					0.07079429085752054
RPLRRLVGA	9	Unmodified	_RPLRRLVGA_					0	0	0		ENST00000591473.1_1_19:36705638-36705767:-|nuORF	ENST00000591473.1_1_19:36705638-36705767:-|nuORF	ENST00000591473.1_1_19:36705638-36705767:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.338134765625	2	519.338167	1036.66178	0.30182	0.00015675	-0.20948	-0.00010879	0.092339	4.7955E-05	519.3379934411028	25.371	0.67873	25.371	25.035	25.714	0					60	22	3	0	0	0	0.15219	1	4036	4036		30.637	2.1497	1	450540			38899	12184	22677	22678	47044	47044					0.144916591735182
RPLRRLVGA	9	Unmodified	_RPLRRLVGA_					0	0	0		ENST00000591473.1_1_19:36705638-36705767:-|nuORF	ENST00000591473.1_1_19:36705638-36705767:-|nuORF	ENST00000591473.1_1_19:36705638-36705767:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	519.338167	1036.66178	0.08334	4.3282E-05	0.058646	3.0457E-05	0.14199	7.3739E-05	519.338118179125	25.408	0.65585	25.352	25.048	25.704	-0.055931	-0.04162	0.0001119	NaN	30.637	58	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	507050			38900	12184	22677	22678							0.144916591735182
RPLRRLVGA	9	Unmodified	_RPLRRLVGA_					0	0	0		ENST00000591473.1_1_19:36705638-36705767:-|nuORF	ENST00000591473.1_1_19:36705638-36705767:-|nuORF	ENST00000591473.1_1_19:36705638-36705767:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	519.338167	1036.66178	-0.011133	-5.7817E-06	0.096874	5.0311E-05	0.085742	4.4529E-05	519.3381417074273	25.489	0.69753	25.458	25.126	25.824	-0.03141	0.064345	0.00015161	NaN	30.637	66	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	425290			38901	12184	22677	22678							0.144916591735182
RPLRSTGVAL	10	Unmodified	_RPLRSTGVAL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.3277587890625	2	535.327465	1068.64038	0.64033	0.00034279	0.03745	2.0048E-05	0.67778	0.00036284	535.3273814211457	29.09	1.1854	29.09	28.76	29.945	0					109	42	4	0	0	0	0.084702	3	5141	5141;5191;5238		51.415	23.786	1	1297200			38902	1682	22678	22679	47045;47046;47047	47045					0.10880229354120274
RPLRSTGVAL	10	Unmodified	_RPLRSTGVAL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.32763671875	2	535.327465	1068.64038	0.33512	0.0001794	0.32544	0.00017422	0.66055	0.00035361	535.3275493313588	28.988	1.0346	29	28.769	29.803	0.012266					101	35	4	0	0	0	0.11865	2	5116	5116;5164		43.982	16.353	1	1376400			38903	1682	22678	22679	47048;47049	47048					0.10880229354120274
RPLRSTGVAL	10	Unmodified	_RPLRSTGVAL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.3275756835938	2	535.327465	1068.64038	0.32135	0.00017203	0.28836	0.00015437	0.60971	0.0003264	535.327525447691	29.046	1.0353	29.059	28.789	29.824	0.013474					101	36	4	0	0	0	0.11865	3	5125	5125;5174;5223		43.982	16.353	1	1381200			38904	1682	22678	22679	47050;47051;47052	47050					0.10880229354120274
RPLRTRRRR	9	Unmodified	_RPLRTRRRR_					0	0	0		ENST00000444527.2_1_8:56364433-56364982:-|nuORF	ENST00000444527.2_1_8:56364433-56364982:-|nuORF	ENST00000444527.2_1_8:56364433-56364982:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.2392883300781	3	422.941189	1265.80174	0.035862	1.5168E-05	1.6548	0.00069987	1.6906	0.00071503	422.9419514562557	21.489	0.4542	21.44	21.207	21.661	-0.049377					27	15	2	0	0	0	0.26245	1	2797	2797		0.96228	0.33545	1	46142			38905	10575	22679	22680	47053	47053					0.17946836230566987
RPLSFRKP	8	Unmodified	_RPLSFRKP_					0	0	0		ENST00000495397.1_1_1:161696362-161697449:+|nuORF;ENSG00000162746|ENST00000367948|FCRLB	ENST00000495397.1_1_1:161696362-161697449:+|nuORF	ENST00000495397.1_1_1:161696362-161697449:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.25872802734375	2	500.806168	999.597784	0.29503	0.00014775	-1.2773	-0.00063966	-0.98222	-0.0004919	500.805552842387	31.286	0.30161	31.327	31.178	31.479	0.040989					16	10	2	0	0	0	0.34167	1	5863	5863		11.64	3.7301	1	70563			38906	5611	22680	22681	47054	47054					0.09796879016550974
RPLSHYSSF	9	Unmodified	_RPLSHYSSF_					0	0	0		ENSG00000171604|ENST00000302517|CXXC5	ENSG00000171604|ENST00000302517|CXXC5	ENSG00000171604|ENST00000302517|CXXC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.2756958007812	2	547.274898	1092.53524	0.57096	0.00031247	-0.34574	-0.00018922	0.22522	0.00012326	547.2747607587161	29.974	1.0073	29.974	29.441	30.448	0					50	35	2	0	0	0	0.11201	1	5404	5404		36.506	12.486	1	156140			38907	6561	22681	22682	47055	47055					-0.007323118423073538
RPLSHYSSF	9	Unmodified	_RPLSHYSSF_					0	0	0		ENSG00000171604|ENST00000302517|CXXC5	ENSG00000171604|ENST00000302517|CXXC5	ENSG00000171604|ENST00000302517|CXXC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.2749633789062	2	547.274898	1092.53524	0.59631	0.00032634	-0.43446	-0.00023777	0.16185	8.8574E-05	547.2746217990575	29.873	0.94914	29.885	29.417	30.366	0.012266					50	32	2	0	0	0	0.074552	1	5392	5392		43.772	18.373	1	168830			38908	6561	22681	22682	47056	47056					-0.007323118423073538
RPLSHYSSF	9	Unmodified	_RPLSHYSSF_					0	0	0		ENSG00000171604|ENST00000302517|CXXC5	ENSG00000171604|ENST00000302517|CXXC5	ENSG00000171604|ENST00000302517|CXXC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.275146484375	2	547.274898	1092.53524	0.26442	0.00014471	-0.059277	-3.2441E-05	0.20514	0.00011227	547.274972881268	29.912	0.89642	29.925	29.454	30.351	0.013475					48	30	2	0	0	0	0.053988	1	5402	5402		51.415	27.395	1	188220			38909	6561	22681	22682	47057	47057					-0.007323118423073538
RPLSKTVRF	9	Unmodified	_RPLSKTVRF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.3379516601562	2	552.337833	1102.66111	0.39307	0.00021711	0.064334	3.5534E-05	0.45741	0.00025264	552.3378319987331	24.408	1.077	24.335	23.905	24.982	-0.072559					95	33	4	0	0	0	0.13296	1	3751	3751		33.445	10.709	1	413240			38910	4449	22682	22683	47058	47058					0.11388819733770106
RPLSKTVRF	9	Unmodified	_RPLSKTVRF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.3380126953125	2	552.337833	1102.66111	0.20147	0.00011128	0.15974	8.8228E-05	0.3612	0.00019951	552.3379076134128	24.44	1.0093	24.401	24.081	25.091	-0.038927					89	34	4	0	0	0	0.13296	1	3748	3748		33.445	16.332	1	455310			38911	4449	22682	22683	47059	47059					0.11388819733770106
RPLSLEDIHRP	11	Unmodified	_RPLSLEDIHRP_					0	0	0			REV__CON__REFSEQ:XP_001252647	REV__CON__REFSEQ:XP_001252647	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	444.2701721191406	3	444.917604	1331.73098	0.2339	0.00010407	0.94871	0.0004221	1.1826	0.00052617	444.91752311178504	37.354	0.75563	37.441	37.117	37.873	0.08741					60	27	3	0	0	0	0.33146	1	7813	7813		4.1166	1.0444	1	391660	+	+	38912	13280	22683	22684	47060	47060					0.07838653611725022
RPLSLEDIHRP	11	Unmodified	_RPLSLEDIHRP_					0	0	0			REV__CON__REFSEQ:XP_001252647	REV__CON__REFSEQ:XP_001252647	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	444.917604	1331.73098	0.38965	0.00017336	-0.043287	-1.9259E-05	0.34636	0.0001541	444.9172653403924	37.31	0.50785	37.403	37.142	37.65	0.093018	-0.019215	-0.00041199	NaN	4.1166	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367110	+	+	38913	13280	22683	22684							0.07838653611725022
RPLSRLLA	8	Unmodified	_RPLSRLLA_					0	0	0		NDUFC1|p.R18K|1|0.24|ENSG00000109390|chr4:139295746-139295746|C/T|missense_variant;ENSG00000109390|ENST00000394223|NDUFC1	NDUFC1|p.R18K|1|0.24|ENSG00000109390|chr4:139295746-139295746|C/T|missense_variant	NDUFC1|p.R18K|1|0.24|ENSG00000109390|chr4:139295746-139295746|C/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.3008117675781	2	463.300719	924.586885	-0.019157	-8.8752E-06	0.075057	3.4774E-05	0.055901	2.5899E-05	463.3008200512899	43.355	1.3757	43.355	42.954	44.33	0					149	50	4	0	0	0	0.1951	1	9532	9532		43.858	2.0187	1	19057000			38914	2251	22684	22685	47061	47061					0.12157476642278198
RPLSVHLNL	9	Unmodified	_RPLSVHLNL_					0	0	0		nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	nc|ENSG00000127329|P23467-4|PTPRB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2474365234375	2	524.816733	1047.61891	0.52893	0.00027759	0.10869	5.7044E-05	0.63762	0.00033463	524.8166902128219	31.803	0.45105	31.844	31.672	32.123	0.040991					17	15	2	0	0	0	0.25202	1	6063	6063		10.824	2.2306	1	285190			38915	3313	22685	22686	47062	47062					0.09700844325402613
RPLSYLYVAGI	11	Unmodified	_RPLSYLYVAGI_					0	0	0			REV__nc|ENSG00000102100|P78381-5|SLC35A2	REV__nc|ENSG00000102100|P78381-5|SLC35A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.922119140625	3	417.908046	1250.70231	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.462	1	39.561	39.061	40.061	0.099407								0	0	0	0.36075	1	8319	8319		5.8681	1.7515	1		+		38916	14305	22686	22687	47063	47063					0.08698535982603062
RPLTLVCAAL	10	Unmodified	_RPLTLVCAAL_					0	0	0			REV__ENSG00000099910|ENST00000328879|KLHL22	REV__ENSG00000099910|ENST00000328879|KLHL22	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8139038085938	2	528.815344	1055.61614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.19	1	116.21	115.71	116.71	0.020988								0	0	0	0.37664	1	30153	30153		3.5965	0	1		+		38917	14142	22687	22688	47064	47064					0.09055252876260056
RPLTRRVQL	9	Unmodified	_RPLTRRVQL_					0	0	0		ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF;nc|ENSG00000123989|Q8IZ52-2|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.313232421875	2	569.862006	1137.70946	0.20162	0.0001149	-0.48226	-0.00027482	-0.28064	-0.00015993	569.8616249506365	27.197	0.3667	27.176	27.015	27.382	-0.021412					16	12	2	0	0	0	0.25938	1	4644	4644		4.3292	0	1	46058			38918	3127	22688	22689	47065	47065					0.14611313373688972
RPLVIKQEPRE	11	Unmodified	_RPLVIKQEPRE_					0	0	0		nc|ENSG00000245848|P49715-3|CEBPA;nc|ENSG00000245848|P49715-2|CEBPA;ENSG00000245848|ENST00000498907|CEBPA;nc|ENSG00000245848|P49715-4|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2437744140625	3	455.605137	1363.79358	0.053761	2.4494E-05	-0.75613	-0.0003445	-0.70237	-0.00032	455.6047797988746	21.88	0.25514	21.831	21.717	21.972	-0.049377					13	9	2	0	0	0	0.33236	1	2982	2982		4.4062	2.4998	1	48653			38919	8576	22689	22690	47066	47066					0.12623799679931835
RPLVVKTSL	9	Unmodified	_RPLVVKTSL_					0	0	0		ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8294372558594	2	506.829309	1011.64407	0.24483	0.00012409	-0.048129	-2.4393E-05	0.1967	9.9693E-05	506.8290990500638	33.326	0.58288	33.326	33.091	33.674	0					47	20	3	0	0	0	0.064268	1	6464	6464		47.594	26.057	1	279860			38920	5022	22690	22691	47067	47067					0.1387089912798274
RPLVVKTSL	9	Unmodified	_RPLVVKTSL_					0	0	0		ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.829345703125	2	506.829309	1011.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.239	1	33.294	32.794	33.794	0.055309								0	0	0	0.026891	1	6425	6425		67.838	35.052	1				38921	5022	22690	22691	47068	47068					0.1387089912798274
RPLVVKTSL	9	Unmodified	_RPLVVKTSL_					0	0	0		ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.8296813964844	2	506.829309	1011.64407	0.18053	9.1498E-05	0.014977	7.591E-06	0.19551	9.9089E-05	506.82924346023765	33.221	0.49632	33.275	33.013	33.509	0.054371					37	17	3	0	0	0	0.032589	1	6418	6418		59.368	38.954	1	355720			38922	5022	22690	22691	47069	47069					0.1387089912798274
RPLWDVGW	8	Unmodified	_RPLWDVGW_					0	0	0			REV__ENST00000586361.5_1_19:36386996-36387795:-|nuORF	REV__ENST00000586361.5_1_19:36386996-36387795:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2965087890625	2	514.769252	1027.52395	0.28045	0.00014437	-0.21771	-0.00011207	0.062733	3.2293E-05	514.7689637100185	21.263	0.71072	21.21	20.947	21.658	-0.05291					48	24	3	0	0	0	0.34272	1	2786	2786		7.9102	0	1	132500	+		38923	22518	22691	22692	47070	47070					0.011289108542314352
RPLYKNIVL	9	Unmodified	_RPLYKNIVL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3507080078125	2	558.350409	1114.68626	0.26307	0.00014688	-0.19868	-0.00011093	0.064389	3.5951E-05	558.3502332277861	44.001	1.8999	44.001	43.63	45.53	0					177	69	5	0	0	0	0.012929	5	9706	9660;9706;9755;9797;9849		74.929	32.834	1	16907000			38924	2606	22692	22693	47071;47072;47073;47074;47075	47072					0.1335087453635424
RPLYKNIVL	9	Unmodified	_RPLYKNIVL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3506469726562	2	558.350409	1114.68626	0.36847	0.00020574	-0.3717	-0.00020754	-0.0032294	-1.8032E-06	558.3501607692114	43.727	2.0646	43.804	43.401	45.465	0.077515					192	75	5	0	0	0	0.012929	6	9602	9553;9602;9651;9708;9751;9801		74.929	26.583	1	16714000			38925	2606	22692	22693	47076;47077;47078;47079;47080;47081	47077					0.1335087453635424
RPLYKNIVL	9	Unmodified	_RPLYKNIVL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3505859375	2	558.350409	1114.68626	0.3012	0.00016818	-0.3843	-0.00021457	-0.083095	-4.6396E-05	558.3501160740541	43.741	2.096	43.825	43.41	45.506	0.083996					185	77	5	0	0	0	0.012929	5	9586	9541;9586;9633;9675;9729		74.929	33.089	1	15809000			38926	2606	22692	22693	47082;47083;47084;47085;47086	47083					0.1335087453635424
RPMDLHVFHAL	11	Oxidation (M)	_RPM(Oxidation (M))DLHVFHAL_		RPM(1)DLHVFHAL		RPM(44)DLHVFHAL	0	0	1		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2362060546875	3	451.236168	1350.68668	0.20051	9.0479E-05	-0.11631	-5.2483E-05	0.084203	3.7995E-05	451.23623122667436	40.934	0.74107	41.026	40.717	41.458	0.091793					63	27	3	0	0	0	0.081251	1	8770	8770		44.207	37.972	1	876340			38927	3102	22693	22694	47087	47087		389			0.025359261939229327
RPMDLHVFHAL	11	Oxidation (M)	_RPM(Oxidation (M))DLHVFHAL_		RPM(1)DLHVFHAL		RPM(41)DLHVFHAL	0	0	1		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.236572265625	3	451.236168	1350.68668	0.0036026	1.6256E-06	0.01253	5.6542E-06	0.016133	7.2798E-06	451.2363683541759	40.844	0.78341	40.943	40.641	41.425	0.099407					66	28	4	0	0	0	0.094126	1	8727	8727		40.714	32.27	1	779150			38928	3102	22693	22694	47088	47088		389			0.025359261939229327
RPMGAGEAL	9	Oxidation (M)	_RPM(Oxidation (M))GAGEAL_		RPM(1)GAGEAL		RPM(46)GAGEAL	0	0	1		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2282409667969	2	459.229102	916.443651	0.33074	0.00015189	-1.5819	-0.00072645	-1.2512	-0.00057456	459.22833935120025	21.179	0.98066	21.069	20.753	21.734	-0.11003					79	34	3	0	0	0	0.069366	1	2769	2769		45.7	20.3	1	722330			38929	3421	22694	22695	47089	47089		431			-0.0179131853110448
RPMGAGEAL	9	Oxidation (M)	_RPM(Oxidation (M))GAGEAL_					0	0	1		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	459.229102	916.443651	0.19089	8.7662E-05	-1.4701	-0.00067511	-1.2792	-0.00058744	459.2283544660689	20.992	1.0034	20.992	20.65	21.654	0	-0.049103	0.00012515	NaN	45.7	81	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	615800			38930	3421	22694	22695				431			-0.0179131853110448
RPMGAGEAL	9	Oxidation (M)	_RPM(Oxidation (M))GAGEAL_					0	0	1		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	459.229102	916.443651	0.29043	0.00013338	-1.8091	-0.00083079	-1.5187	-0.00069742	459.22833730335753	21.114	0.99035	21.061	20.667	21.658	-0.05291	0.020384	-0.00018623	NaN	45.7	95	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614970			38931	3421	22694	22695				431			-0.0179131853110448
RPMKTSVL	8	Oxidation (M)	_RPM(Oxidation (M))KTSVL_		RPM(1)KTSVL		RPM(46)KTSVL	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2704772949219	2	474.27077	946.526987	0.2857	0.0001355	-0.58716	-0.00027847	-0.30146	-0.00014297	474.2704106555813	16.92	0.88548	16.858	16.526	17.412	-0.062534					73	31	4	0	0	0	0.18275	2	1496	1449;1496		46.021	11.203	1	730550			38932	12890	22695	22696	47090;47091	47091		985			0.051584179167321054
RPMLLWLFL	9	Unmodified	_RPMLLWLFL_					0	0	0			REV__ENST00000342494.7_1_12:109915806-109915905:+|nuORF	REV__ENST00000342494.7_1_12:109915806-109915905:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.2933349609375	2	594.85173	1187.68891	0.16146	9.6047E-05	-0.78156	-0.00046491	-0.6201	-0.00036887	594.8513193504554	29.716	0.44407	29.73	29.594	30.038	0.013474					17	14	2	0	0	0	0.26168	1	5354	5354		1.8442	0	1	75419	+		38933	20123	22696	22697	47092	47092					0.10257006669667135
RPMPGTHTV	9	Oxidation (M)	_RPM(Oxidation (M))PGTHTV_		RPM(1)PGTHTV		RPM(76)PGTHTV	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;ENST00000522665.5_1_8:134254200-134261004:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2557067871094	2	506.255651	1010.49675	0.024381	1.2343E-05	0.3547	0.00017957	0.37908	0.00019191	506.25579626422433	15.02	0.45169	15.02	14.729	15.181	0					41	15	3	0	0	0	0.012386	1	870	870		75.761	35.804	1	1854400			38934	1891	22697	22698	47093	47093		232			-0.00807940748461533
RPMPGTHTV	9	Oxidation (M)	_RPM(Oxidation (M))PGTHTV_		RPM(1)PGTHTV		RPM(76)PGTHTV	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;ENST00000522665.5_1_8:134254200-134261004:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.255615234375	2	506.255651	1010.49675	0.046819	2.3702E-05	-0.48748	-0.00024679	-0.44066	-0.00022309	506.25566531310454	15.333	0.99847	15.333	15.154	16.152	0					72	34	3	0	0	0	0.012386	2	996	996;1040		75.761	35.804	1	1618200			38935	1891	22697	22698	47094;47095	47094		232			-0.00807940748461533
RPMPGTHTV	9	Oxidation (M)	_RPM(Oxidation (M))PGTHTV_		RPM(1)PGTHTV		RPM(76)PGTHTV	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;ENST00000522665.5_1_8:134254200-134261004:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2561340332031	2	506.255651	1010.49675	0.078101	3.9539E-05	0.35813	0.0001813	0.43623	0.00022084	506.2558217411505	15.133	0.46971	15.023	14.706	15.176	-0.10981					32	16	2	0	0	0	0.012386	2	963	902;963		75.761	35.804	1	1824800			38936	1891	22697	22698	47096;47097	47097		232			-0.00807940748461533
RPMPGTHTV	9	Oxidation (M)	_RPM(Oxidation (M))PGTHTV_		RPM(1)PGTHTV		RPM(100)PGTHTV	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;ENST00000522665.5_1_8:134254200-134261004:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2556457519531	2	506.255651	1010.49675	0.084309	4.2682E-05	-0.29928	-0.00015151	-0.21498	-0.00010883	506.25566093509156	15.48	0.87555	15.37	15.176	16.051	-0.10982					74	29	3	0	0	0	0.0028626	2	1041	1041;1083		103.35	39.117	1	1406200			38937	1891	22697	22698	47098;47099	47098		232			-0.00807940748461533
RPMPGTHTV	9	Oxidation (M)	_RPM(Oxidation (M))PGTHTV_		RPM(1)PGTHTV		RPM(86)PGTHTV	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;ENST00000522665.5_1_8:134254200-134261004:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2557067871094	2	506.255651	1010.49675	0.011267	5.704E-06	0.44295	0.00022425	0.45422	0.00022995	506.2558565326302	15.176	0.45717	15.111	14.79	15.247	-0.064413					40	15	3	0	0	0	0.0059482	1	948	948		85.642	37.296	1	2026600			38938	1891	22697	22698	47100	47100		232			-0.00807940748461533
RPMPGTHTV	9	Oxidation (M)	_RPM(Oxidation (M))PGTHTV_		RPM(1)PGTHTV		RPM(83)PGTHTV	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;ENST00000522665.5_1_8:134254200-134261004:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2557067871094	2	506.255651	1010.49675	0.04015	2.0326E-05	-0.19634	-9.9397E-05	-0.15619	-7.9071E-05	506.2557168438664	15.468	0.9564	15.404	15.247	16.203	-0.064414					70	32	3	0	0	0	0.0079761	2	1036	1036;1082		82.529	36.508	1	1817800			38939	1891	22697	22698	47101;47102	47101		232			-0.00807940748461533
RPMPGTHTVTL	11	Oxidation (M)	_RPM(Oxidation (M))PGTHTVTL_		RPM(1)PGTHTVTL		RPM(51)PGTHTVTL	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;ENST00000522665.5_1_8:134254200-134261004:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.3214721679688	2	613.321522	1224.62849	-0.08612	-5.2819E-05	-0.076103	-4.6675E-05	-0.16222	-9.9495E-05	613.3214082398497	27.906	0.53759	27.906	27.643	28.181	0					50	18	4	0	0	0	0.056067	1	4820	4820		51.488	37.083	1	703980			38940	1891	22698	22699	47103	47103		232			0.025162445486330398
RPMPGTHTVTL	11	Oxidation (M)	_RPM(Oxidation (M))PGTHTVTL_					0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;ENST00000522665.5_1_8:134254200-134261004:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	613.321522	1224.62849	-0.10252	-6.2879E-05	0.0017796	1.0915E-06	-0.10074	-6.1787E-05	613.3214500078659	27.873	0.50833	27.869	27.604	28.112	-0.0042572	-0.0084798	4.2317E-05	NaN	51.488	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	633330			38941	1891	22698	22699				232			0.025162445486330398
RPMPGTHTVTL	11	Oxidation (M)	_RPM(Oxidation (M))PGTHTVTL_					0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;ENST00000522665.5_1_8:134254200-134261004:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	613.321522	1224.62849	-0.18436	-0.00011307	-0.040248	-2.4685E-05	-0.22461	-0.00013776	613.3215327018443	27.858	0.50819	27.858	27.596	28.104	0.00046921	-0.019633	-9.236E-06	NaN	51.488	51	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	619310			38942	1891	22698	22699				232			0.025162445486330398
RPNERQVAQL	10	Unmodified	_RPNERQVAQL_					0	0	0		nc|ENSG00000116701|P19878-3|NCF2;ENSG00000116701|ENST00000367535|NCF2	nc|ENSG00000116701|P19878-3|NCF2	nc|ENSG00000116701|P19878-3|NCF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.22625732421875	3	404.226549	1209.65782	-0.17829	-7.2069E-05	-0.0886	-3.5814E-05	-0.26689	-0.00010788	404.2267396097191	24.231	0.63169	24.231	23.943	24.575	0					56	21	4	0	0	0	0.31787	1	3667	3667		9.7643	9.7643	1	118040			38943	2743	22699	22700	47104	47104					0.0613752488911814
RPNERQVAQL	10	Unmodified	_RPNERQVAQL_					0	0	0		nc|ENSG00000116701|P19878-3|NCF2;ENSG00000116701|ENST00000367535|NCF2	nc|ENSG00000116701|P19878-3|NCF2	nc|ENSG00000116701|P19878-3|NCF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	404.226549	1209.65782	-0.15771	-6.3753E-05	0.76547	0.00030942	0.60776	0.00024567	404.2270178458752	24.371	1.1196	24.299	23.966	25.086	-0.072559	0.015723	0.00047128	NaN	13.519	62	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125920			38944	2743	22699	22700							0.0613752488911814
RPNERQVAQL	10	Unmodified	_RPNERQVAQL_					0	0	0		nc|ENSG00000116701|P19878-3|NCF2;ENSG00000116701|ENST00000367535|NCF2	nc|ENSG00000116701|P19878-3|NCF2	nc|ENSG00000116701|P19878-3|NCF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	404.226549	1209.65782	-0.25366	-0.00010254	0.5539	0.0002239	0.30024	0.00012136	404.22695742770554	24.359	1.0694	24.32	24.049	25.119	-0.038927	0.03675	0.00021472	NaN	13.519	64	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174710			38945	2743	22699	22700							0.0613752488911814
RPNGGPRAL	9	Unmodified	_RPNGGPRAL_					0	0	0		ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2701110839844	2	469.26995	936.525347	-0.072317	-3.3936E-05	0.28311	0.00013286	0.21079	9.8919E-05	469.2700419337075	16.417	0.53627	16.417	16.123	16.659	0					44	18	3	0	0	0	0.25314	1	1294	1294		15.847	7.2539	1	115460			38946	7314	22700	22701	47105	47105					0.0545454494298383
RPNGGPRAL	9	Unmodified	_RPNGGPRAL_					0	0	0		ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.27020263671875	2	469.26995	936.525347	-0.092885	-4.3588E-05	0.4979	0.00023365	0.40501	0.00019006	469.2700841625672	16.53	0.50134	16.416	16.166	16.667	-0.11434					42	17	3	0	0	0	0.22188	2	1343	1343;1395		20.454	11.86	1	145070			38947	7314	22700	22701	47106;47107	47106					0.0545454494298383
RPNGGPRAL	9	Unmodified	_RPNGGPRAL_					0	0	0		ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.2702941894531	2	469.26995	936.525347	0.15382	7.2182E-05	0.24909	0.00011689	0.4029	0.00018907	469.26998886870217	16.395	0.55128	16.332	16.094	16.646	-0.062532					46	18	3	0	0	0	0.25989	2	1306	1306;1356		14.838	6.245	1	153720			38948	7314	22700	22701	47108;47109	47108					0.0545454494298383
RPNGLDNKL	9	Unmodified	_RPNGLDNKL_					0	0	0			REV__nc|ENSG00000196616|P00325-2|ADH1B	REV__nc|ENSG00000196616|P00325-2|ADH1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7869262695312	2	513.788173	1025.56179	0.036036	1.8515E-05	-1.3815	-0.0007098	-1.3455	-0.00069129	513.7873854490592	15.194	0.39726	15.084	14.982	15.38	-0.10981					30	13	3	0	0	0	0.26031	1	1012	1012		3.5965	0	1	180130	+		38949	18668	22701	22702	47110	47110					0.05003377049024493
RPNGLDNKL	9	Unmodified	_RPNGLDNKL_					0	0	0			REV__nc|ENSG00000196616|P00325-2|ADH1B	REV__nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.788173	1025.56179	0.030301	1.5568E-05	-1.4484	-0.00074416	-1.4181	-0.00072859	513.7873498284841	15.064	0.40115	15.064	14.981	15.382	0	-0.03738	-0.00018002	NaN	3.5965	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191290	+		38950	18668	22701	22702							0.05003377049024493
RPNGLDNKL	9	Unmodified	_RPNGLDNKL_					0	0	0			REV__nc|ENSG00000196616|P00325-2|ADH1B	REV__nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	513.788173	1025.56179	-0.079806	-4.1003E-05	-1.0462	-0.00053755	-1.1261	-0.00057855	513.7876285631359	15.221	0.41618	15.157	15.041	15.457	-0.064413	0.055063	0.0002332	NaN	3.5965	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173400	+		38951	18668	22701	22702							0.05003377049024493
RPNGSSVPVT	10	Unmodified	_RPNGSSVPVT_					0	0	0		ENST00000397637.5_1_21:48055700-48056138:+|nuORF	ENST00000397637.5_1_21:48055700-48056138:+|nuORF	ENST00000397637.5_1_21:48055700-48056138:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.8005065917969	2	507.272355	1012.53016	0.29148	0.00014786	-0.031021	-1.5736E-05	0.26046	0.00013213	507.2722543792668	24.708	0.47572	24.708	24.454	24.93	0					37	15	4	0	0	0	0.31143	1	3774	3774		12.241	0	1	72353			38952	10143	22702	22703	47111	47111					0.024393842950985345
RPNGTKVAVL	10	Unmodified	_RPNGTKVAVL_					0	0	0		nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;ENST00000474535.2_1_2:38545640-38570535:-|nuORF	nc|ENSG00000119787|Q8NHH9-5|ATL2	nc|ENSG00000119787|Q8NHH9-5|ATL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.8218383789062	2	527.822015	1053.62948	0.36993	0.00019525	-0.33182	-0.00017514	0.038104	2.0112E-05	527.8217714326989	25.573	0.44095	25.573	25.328	25.769	0					30	14	3	0	0	0	0.30872	1	4080	4080		19.362	3.2128	1	243090			38953	2908	22703	22704	47112	47112					0.10480826979846825
RPNGTKVAVL	10	Unmodified	_RPNGTKVAVL_					0	0	0		nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;ENST00000474535.2_1_2:38545640-38570535:-|nuORF	nc|ENSG00000119787|Q8NHH9-5|ATL2	nc|ENSG00000119787|Q8NHH9-5|ATL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.8219604492188	2	527.822015	1053.62948	0.13982	7.3802E-05	-0.15755	-8.3158E-05	-0.017726	-9.3564E-06	527.8218713168088	25.616	0.4551	25.56	25.341	25.796	-0.055931					35	15	3	0	0	0	0.30872	1	4088	4088		19.362	4.1135	1	277300			38954	2908	22703	22704	47113	47113					0.10480826979846825
RPNGTKVAVL	10	Unmodified	_RPNGTKVAVL_					0	0	0		nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;ENST00000474535.2_1_2:38545640-38570535:-|nuORF	nc|ENSG00000119787|Q8NHH9-5|ATL2	nc|ENSG00000119787|Q8NHH9-5|ATL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.8215942382812	2	527.822015	1053.62948	0.22141	0.00011687	-0.14749	-7.785E-05	0.073922	3.9017E-05	527.8218497242692	25.614	0.47663	25.583	25.347	25.824	-0.031408					39	16	3	0	0	0	0.30872	2	4137	4084;4137		19.362	3.6059	1	308250			38955	2908	22703	22704	47114;47115	47115					0.10480826979846825
RPNGVITGL	9	Unmodified	_RPNGVITGL_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1;nc|ENSG00000122068|Q96QD9-4|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.77447509765625	2	463.774534	925.534515	-0.19697	-9.1351E-05	1.0963	0.00050844	0.89935	0.00041709	463.7750215752412	39.929	1.0451	39.929	39.48	40.526	0					87	37	3	0	0	0	0.0037772	2	8438	8438;8487		96.111	28.483	1	1736200			38956	3029	22704	22705	47116;47117	47116					0.06876893508649573
RPNGVITGL	9	Unmodified	_RPNGVITGL_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1;nc|ENSG00000122068|Q96QD9-4|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7745361328125	2	463.774534	925.534515	0.18759	8.7001E-05	0.63214	0.00029317	0.81974	0.00038017	463.7747843575942	39.69	0.91922	39.789	39.396	40.315	0.099407					80	32	3	0	0	0	0.0023784	2	8382	8382;8429		107.19	49.716	1	1859900			38957	3029	22704	22705	47118;47119	47118					0.06876893508649573
RPNKQVPRSQH	11	Unmodified	_RPNKQVPRSQH_					0	0	0			REV__ENST00000592414.1_1_19:3055403-3056603:-|nuORF	REV__ENST00000592414.1_1_19:3055403-3056603:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.59869384765625	3	449.584848	1345.73271	-0.074401	-3.345E-05	-0.019783	-8.8941E-06	-0.094184	-4.2344E-05	449.58479061406064	15.176	0.33721	15.176	15.044	15.382	0					21	11	2	0	0	0	0.3333	1	913	913		1.3296	0.70282	1	31304	+		38958	22572	22705	22706	47120	47120					0.07367707420371516
RPNMYMQSL	9	2 Oxidation (M)	_RPNM(Oxidation (M))YM(Oxidation (M))QSL_		RPNM(1)YM(1)QSL		RPNM(59)YM(59)QSL	0	0	2		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.2653198242188	2	586.265358	1170.51616	0.085897	5.0358E-05	0.19796	0.00011606	0.28385	0.00016641	586.2656241945765	27.604	0.57027	27.604	27.354	27.924	0					39	19	3	0	0	0	0.032589	1	4721	4721		59.368	36.632	1	155760			38959	7185	22706	22707	47121	47121		802;803			-0.06227352519840679
RPNMYMQSL	9	2 Oxidation (M)	_RPNM(Oxidation (M))YM(Oxidation (M))QSL_		RPNM(1)YM(1)QSL		RPNM(46)YM(46)QSL	0	0	2		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.2651977539062	2	586.265358	1170.51616	0.029904	1.7531E-05	0.42327	0.00024815	0.45317	0.00026568	586.2655526970834	27.618	0.48948	27.606	27.318	27.808	-0.01156					27	16	2	0	0	0	0.069258	1	4714	4714		45.74	28.627	1	188330			38960	7185	22706	22707	47122	47122		802;803			-0.06227352519840679
RPNNPPGVL	9	Unmodified	_RPNNPPGVL_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.2719421386719	2	482.272158	962.529764	0.225	0.00010851	-0.037617	-1.8142E-05	0.18739	9.0371E-05	482.27208629651136	30.528	0.86186	30.528	30.282	31.144	0					47	30	2	0	0	0	0.17787	1	5596	5596		26.884	12.045	1	202450			38961	3708	22707	22708	47123	47123					0.04700009365899405
RPNNPPGVL	9	Unmodified	_RPNNPPGVL_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.27203369140625	2	482.272158	962.529764	0.24804	0.00011962	-0.17371	-8.3775E-05	0.074327	3.5846E-05	482.271990149401	30.614	0.76213	30.642	30.354	31.116	0.027946					41	26	2	0	0	0	0.18803	1	5660	5660		25.399	13.759	1	189220			38962	3708	22707	22708	47124	47124					0.04700009365899405
RPNNPPGVL	9	Unmodified	_RPNNPPGVL_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.2722473144531	2	482.272158	962.529764	0.053079	2.5599E-05	0.14464	6.9755E-05	0.19772	9.5354E-05	482.2721355300631	30.64	0.66585	30.667	30.309	30.975	0.027157					41	23	2	0	0	0	0.17787	3	5581	5581;5629;5679		26.884	6.43	1	200780			38963	3708	22707	22708	47125;47126;47127	47125					0.04700009365899405
RPNPKKLRGLL	11	Unmodified	_RPNPKKLRGLL_					0	0	0			REV__chr6:106747288-106772258|375|44.02|0.47|6.54|-|2|LINC02532,LINC02532|1	REV__chr6:106747288-106772258|375|44.02|0.47|6.54|-|2|LINC02532,LINC02532|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.90667724609375	3	431.282218	1290.82482	-0.37109	-0.00016005	-0.12694	-5.4747E-05	-0.49804	-0.00021479	431.2820931276178	42.511	0.7048	42.511	42.277	42.982	0					68	25	4	0	0	0	0.33303	1	9313	9313		1.1098	0	1	883260	+		38964	13206	22708	22709	47128	47128					0.19104417504695448
RPNTPKTLL	9	Unmodified	_RPNTPKTLL_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;TNPO2|p.E766D|1|0.29|ENSG00000105576|chr19:12702830-12702830|T/A|missense_variant;ENST00000436471.2_1_17:20384856-20385102:-|nuORF;ENST00000587155.1_1_19:12812547-12813748:-|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3156127929688	2	520.316566	1038.61858	0.24266	0.00012626	-1.9126	-0.00099517	-1.67	-0.00086891	520.315742963731	28.589	0.73256	28.585	28.385	29.118	-0.0042572					35	25	2	0	0	0	0.22935	1	4998	4998		19.362	3.5148	1	185720			38965	1995;1219	22709	22710	47129	47129					0.10081424605573375
RPNTPKTLL	9	Unmodified	_RPNTPKTLL_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;TNPO2|p.E766D|1|0.29|ENSG00000105576|chr19:12702830-12702830|T/A|missense_variant;ENST00000436471.2_1_17:20384856-20385102:-|nuORF;ENST00000587155.1_1_19:12812547-12813748:-|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.8172607421875	2	520.316566	1038.61858	0.13102	6.8171E-05	-1.304	-0.00067849	-1.173	-0.00061032	520.3159088980608	28.607	0.74935	28.607	28.351	29.1	0.0004673					37	26	2	0	0	0	0.11201	1	5020	5020		36.506	6.2814	1	157940			38966	1995;1219	22709	22710	47130	47130					0.10081424605573375
RPNWRIYY	8	Unmodified	_RPNWRIYY_					0	0	0			REV__nc|ENSG00000171100|Q13496-2|MTM1;REV__nc|ENSG00000087053|Q13614-2|MTMR2	REV__nc|ENSG00000087053|Q13614-2|MTMR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3067016601562	2	584.306532	1166.59851	-0.013523	-7.9016E-06	0.38897	0.00022728	0.37545	0.00021938	584.3066664688317	14.141	0.48987	14.075	13.831	14.32	-0.066068					26	16	2	0	0	0	0.46022	1	627	627		2.3027	0.9732	1	80620	+		38967	13984;17619	22710	22711	47131	47131					0.021876736655940476
RPNWRIYY	8	Unmodified	_RPNWRIYY_					0	0	0			REV__nc|ENSG00000171100|Q13496-2|MTM1;REV__nc|ENSG00000087053|Q13614-2|MTMR2	REV__nc|ENSG00000087053|Q13614-2|MTMR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	584.306532	1166.59851	-0.0029214	-1.707E-06	0.38266	0.00022359	0.37974	0.00022188	584.3066061009761	14.07	0.39852	14.07	13.822	14.221	0	0.011906	0.00012121	NaN	2.3027	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83877	+		38968	13984;17619	22710	22711							0.021876736655940476
RPNWRIYY	8	Unmodified	_RPNWRIYY_					0	0	0			REV__nc|ENSG00000171100|Q13496-2|MTM1;REV__nc|ENSG00000087053|Q13614-2|MTMR2	REV__nc|ENSG00000087053|Q13614-2|MTMR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	584.306532	1166.59851	-0.075153	-4.3913E-05	-0.032983	-1.9272E-05	-0.10814	-6.3185E-05	584.3065726544253	14.134	0.42855	14.029	13.845	14.273	-0.10466	-0.029113	-0.00036452	NaN	2.3027	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86436	+		38969	13984;17619	22710	22711							0.021876736655940476
RPNWRIYY	8	Unmodified	_RPNWRIYY_					0	0	0			REV__nc|ENSG00000171100|Q13496-2|MTM1;REV__nc|ENSG00000087053|Q13614-2|MTMR2	REV__nc|ENSG00000087053|Q13614-2|MTMR2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	584.306532	1166.59851	-0.013523	-7.9016E-06	0.38897	0.00022728	0.37545	0.00021938	584.3066664688317	14.141	0.48987	14.075	13.831	14.32	-0.066068	0.017207	0.00012858	NaN	2.3027	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80620	+		38970	13984;17619	22710	22711							0.021876736655940476
RPPAFCST	8	Unmodified	_RPPAFCST_					0	0	0			REV__ENST00000494993.1_1_15:91475325-91475739:-|nuORF	REV__ENST00000494993.1_1_15:91475325-91475739:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.71307373046875	2	439.713088	877.411622	0.091115	4.0064E-05	0.21373	9.3978E-05	0.30484	0.00013404	439.71314303099706	66.91	0.73786	66.91	66.6	67.338	0					42	25	2	0	0	0	0.4419	1	16766	16766		8.5933	0	1	374730	+		38971	21657	22711	22712	47132	47132					-0.0319868621426167
RPPAPLRAP	9	Unmodified	_RPPAPLRAP_					0	0	0			REV__ENST00000371443.5_1_9:140445786-140446769:+|nuORF	REV__ENST00000371443.5_1_9:140445786-140446769:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7579040527344	2	487.798343	973.582134	0.29712	0.00014493	-1.3612	-0.00066398	-1.0641	-0.00051905	487.79763229823226	23.385	0.52595	23.34	23.06	23.586	-0.044867					25	18	2	0	0	0	0.25622	1	3352	3352		7.2892	0	1	57207	+		38972	20398	22712	22713	47133	47133					0.09428592499489241
RPPCLPPKP	9	Unmodified	_RPPCLPPKP_					0	0	0		ENSG00000196220|ENST00000383836|SRGAP3	ENSG00000196220|ENST00000383836|SRGAP3	ENSG00000196220|ENST00000383836|SRGAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.27459716796875	2	502.78913	1003.56371	-0.075272	-3.7846E-05	0.75456	0.00037938	0.67929	0.00034154	502.78930340294295	13.168	0.538	13.101	12.791	13.329	-0.067495					34	18	3	0	0	0	0.26168	1	353	353		1.8442	0.36234	1	86266			38973	7839	22713	22714	47134	47134					0.06206714533277591
RPPFSCFC	8	Unmodified	_RPPFSCFC_					0	0	0			REV__ENST00000064778.8_1_11:73116189-73116408:-|nuORF	REV__ENST00000064778.8_1_11:73116189-73116408:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7093200683594	2	478.709491	955.404429	-0.061011	-2.9206E-05	0.18529	8.8701E-05	0.12428	5.9494E-05	478.70952572116454	14.383	0.43439	14.279	14.131	14.565	-0.10466					38	14	4	0	0	0	0.46022	2	709	709;755		2.3027	0	1	176270	+		38974	19380	22714	22715	47135;47136	47135					-0.0750574208634589
RPPFSCFC	8	Unmodified	_RPPFSCFC_					0	0	0			REV__ENST00000064778.8_1_11:73116189-73116408:-|nuORF	REV__ENST00000064778.8_1_11:73116189-73116408:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7096862792969	2	478.709491	955.404429	-0.075267	-3.6031E-05	0.24985	0.0001196	0.17458	8.3573E-05	478.70951372093623	14.379	0.52041	14.313	14.124	14.644	-0.066068					40	18	3	0	0	0	0.46022	1	700	700		2.3027	0	1	133170	+		38975	19380	22714	22715	47137	47137					-0.0750574208634589
RPPFSCFC	8	Unmodified	_RPPFSCFC_					0	0	0			REV__ENST00000064778.8_1_11:73116189-73116408:-|nuORF	REV__ENST00000064778.8_1_11:73116189-73116408:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2649230957031	2	478.709491	955.404429	-0.075267	-3.6031E-05	0.24985	0.0001196	0.17458	8.3573E-05	478.70951372093623	14.379	0.52041	14.313	14.124	14.644	-0.066068					40	18	3	0	0	0	0.34437	1	669	669		0.69038	0	1	133170	+		38976	19380	22714	22715	47138	47138					-0.0750574208634589
RPPFYVHVS	9	Unmodified	_RPPFYVHVS_					0	0	0		ENST00000361866.7_1_21:47424682-47424931:+|nuORF	ENST00000361866.7_1_21:47424682-47424931:+|nuORF	ENST00000361866.7_1_21:47424682-47424931:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.2954711914062	2	551.295633	1100.57671	0.41644	0.00022958	-0.77491	-0.0004272	-0.35847	-0.00019762	551.2953089477944	16.846	0.83262	16.783	16.495	17.327	-0.062534					82	29	5	0	0	0	0.34681	1	1502	1502		1.8442	0.19162	1	227350			38977	9700	22715	22716	47139	47139					0.030448689170498255
RPPGALGSVL	10	Unmodified	_RPPGALGSVL_					0	0	0		nc|ENSG00000105327|Q96PG8|BBC3	nc|ENSG00000105327|Q96PG8|BBC3	nc|ENSG00000105327|Q96PG8|BBC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7901306152344	2	483.790184	965.565815	0.32637	0.00015789	0.65828	0.00031847	0.98464	0.00047636	483.7901362219632	23.6	1.0661	23.561	22.983	24.049	-0.038927					72	37	3	0	0	0	0.35637	1	3584	3584		11.495	0	1	221950			38978	12634	22716	22717	47140	47140					0.08165466542777722
RPPGFESCLCY	11	Unmodified	_RPPGFESCLCY_					0	0	0		ENST00000417355.1_1_2:220163779-220168768:+|nuORF	ENST00000417355.1_1_2:220163779-220168768:+|nuORF	ENST00000417355.1_1_2:220163779-220168768:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.5232238769531	3	424.523098	1270.54746	-0.38017	-0.00016139	0.57022	0.00024207	0.19005	8.0679E-05	424.52332240732034	12.364	0.31549	12.268	12.178	12.493	-0.096607					18	10	3	0	0	0	0.46277	1	113	113		1.2148	0	1	106740			38979	10334	22717	22718	47141	47141					-0.07698779485758678
RPPGRLSP	8	Unmodified	_RPPGRLSP_					0	0	0			REV__ENST00000508146.5_1_4:100009853-100009916:-|nuORF	REV__ENST00000508146.5_1_4:100009853-100009916:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.882080078125	2	440.261594	878.508634	-0.26049	-0.00011468	-1.5163	-0.00066755	-1.7767	-0.00078223	440.261778126589	14.117	0.23289	14.013	13.816	14.049	-0.10466					14	7	3	0	0	0	0.34408	1	637	637		2.3027	0	1	41514	+		38980	21768	22718	22719	47142	47142					0.06452044057027706
RPPGRPQIFL	10	Unmodified	_RPPGRPQIFL_					0	0	0		nc|ENSG00000205696|A8MUL3|ADARB2-AS1	nc|ENSG00000205696|A8MUL3|ADARB2-AS1	nc|ENSG00000205696|A8MUL3|ADARB2-AS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.85205078125	2	590.851107	1179.68766	0.4688	0.00027699	0.31356	0.00018527	0.78237	0.00046226	590.8511392124237	41.763	0.45592	41.853	41.787	42.243	0.090248					24	16	2	0	0	0	0.27059	1	9099	9099		24.021	4.7636	1	1012600			38981	12913	22719	22720	47143	47143					0.1050050862511398
RPPGRPQIFL	10	Unmodified	_RPPGRPQIFL_					0	0	0		nc|ENSG00000205696|A8MUL3|ADARB2-AS1	nc|ENSG00000205696|A8MUL3|ADARB2-AS1	nc|ENSG00000205696|A8MUL3|ADARB2-AS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.8507690429688	2	590.851107	1179.68766	0.67341	0.00039789	0.4258	0.00025158	1.0992	0.00064947	590.8513336265487	41.692	0.47938	41.788	41.729	42.208	0.096626					28	17	2	0	0	0	0.27059	2	9031	9031;9085		24.021	4.2403	1	999780			38982	12913	22719	22720	47144;47145	47144					0.1050050862511398
RPPKAPVRR	9	Unmodified	_RPPKAPVRR_					0	0	0			REV__ENST00000605573.1_1_3:187871449-187871548:-|nuORF	REV__ENST00000605573.1_1_3:187871449-187871548:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8184814453125	2	538.843616	1075.67268	0.14121	7.6088E-05	-0.6912	-0.00037245	-0.55	-0.00029636	538.8431339507815	13.114	0.38371	13.114	12.925	13.309	0					19	13	2	0	0	0	0.26168	1	330	330		1.8442	0	1	33082	+		38983	22656	22720	22721	47146	47146					0.13787061547782287
RPPKVASK	8	Unmodified	_RPPKVASK_					0	0	0		ENST00000537318.5_1_11:61546644-61549415:+|nuORF;nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF	ENST00000537318.5_1_11:61546644-61549415:+|nuORF	ENST00000537318.5_1_11:61546644-61549415:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2457275390625	2	441.779619	881.544686	0.042554	1.8799E-05	-0.099668	-4.4031E-05	-0.057114	-2.5232E-05	441.77950153087835	24.763	0.50902	24.707	24.514	25.023	-0.055931					22	17	2	0	0	0	0.34313	1	3839	3839		6.7232	1.9672	1	47753			38984	3188	22721	22722	47147	47147					0.09917501233894654
RPPKVASK	8	Unmodified	_RPPKVASK_					0	0	0		ENST00000537318.5_1_11:61546644-61549415:+|nuORF;nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF	ENST00000537318.5_1_11:61546644-61549415:+|nuORF	ENST00000537318.5_1_11:61546644-61549415:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.5736083984375	2	441.779619	881.544686	-0.12303	-5.4352E-05	0.46187	0.00020404	0.33884	0.00014969	441.7799222929816	14.877	0.25186	14.812	14.674	14.926	-0.064413					12	8	2	0	0	0	0.34437	1	815	815		0.69038	0	1	25545			38985	3188	22721	22722	47148	47148					0.09917501233894654
RPPKVASK	8	Unmodified	_RPPKVASK_					0	0	0		ENST00000537318.5_1_11:61546644-61549415:+|nuORF;nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF	ENST00000537318.5_1_11:61546644-61549415:+|nuORF	ENST00000537318.5_1_11:61546644-61549415:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	441.779619	881.544686	-0.081126	-3.584E-05	0.04231	1.8692E-05	-0.038816	-1.7148E-05	441.7796328875267	24.774	0.44311	24.743	24.545	24.988	-0.031408	0.034232	0.00025883	NaN	6.7232	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69170			38986	3188	22721	22722							0.09917501233894654
RPPKVLEF	8	Unmodified	_RPPKVLEF_					0	0	0		nc|ENSG00000006555|Q5TAA0-2|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	nc|ENSG00000006555|Q5TAA0-2|TTC22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.3053894042969	2	493.295102	984.575651	0.39332	0.00019402	0.35547	0.00017535	0.74879	0.00036938	493.2949432865078	21.456	0.39507	21.407	21.179	21.574	-0.049377					23	13	2	0	0	0	0.344	1	2828	2828		2.5775	1.8871	1	27968			38987	12558	22722	22723	47149	47149					0.08274654548142735
RPPKYNAVL	9	Unmodified	_RPPKYNAVL_					0	0	0		ENST00000527401.5_1_11:45957138-45987102:-|nuORF;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3111572265625	2	529.311284	1056.60801	0.69674	0.00036879	-1.2571	-0.00066541	-0.56039	-0.00029662	529.3104705591577	29.337	1.0283	29.337	29.006	30.034	0					85	36	3	0	0	0	0.1939	1	5275	5275		30.637	15.798	1	329280			38988	3867	22723	22724	47150	47150					0.081974419511198
RPPKYNAVL	9	Unmodified	_RPPKYNAVL_					0	0	0		ENST00000527401.5_1_11:45957138-45987102:-|nuORF;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3109130859375	2	529.311284	1056.60801	0.43417	0.00022981	-0.62995	-0.00033344	-0.19578	-0.00010363	529.3107465543203	29.267	1.0596	29.279	29	30.06	0.012266					70	36	3	0	0	0	0.10197	1	5241	5241		37.974	16.437	1	343090			38989	3867	22723	22724	47151	47151					0.081974419511198
RPPKYNAVL	9	Unmodified	_RPPKYNAVL_					0	0	0		ENST00000527401.5_1_11:45957138-45987102:-|nuORF;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	ENST00000527401.5_1_11:45957138-45987102:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3112182617188	2	529.311284	1056.60801	0.31099	0.00016461	-0.61045	-0.00032312	-0.29946	-0.00015851	529.3108146051495	29.309	1.113	29.322	29.033	30.146	0.013475					65	38	2	0	0	0	0.07432	1	5252	5252		43.858	19.838	1	351550			38990	3867	22723	22724	47152	47152					0.081974419511198
RPPLSRRLLAL	11	Unmodified	_RPPLSRRLLAL_					0	0	0		ENSG00000168159|ENST00000305943|RNF187	ENSG00000168159|ENST00000305943|RNF187	ENSG00000168159|ENST00000305943|RNF187	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.2820739746094	3	431.282218	1290.82482	-0.024227	-1.0448E-05	-0.53934	-0.00023261	-0.56356	-0.00024305	431.281892240119	42.271	0.7174	42.356	42.063	42.78	0.085201					66	25	4	0	0	0	0.43809	1	9201	9201		6.2344	0.042509	1	912980			38991	6252	22724	22725	47153	47153					0.19104417504695448
RPPPDGKVE	9	Unmodified	_RPPPDGKVE_					0	0	0			REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	REV__nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.76953125	2	497.769448	993.524344	0.11221	5.5857E-05	-0.81588	-0.00040612	-0.70367	-0.00035026	497.7692263285112	15.686	0.50409	15.621	15.275	15.779	-0.064413					28	16	2	0	0	0	0.33719	1	1116	1116		3.2813	0.70383	1	55067	+		38992	16647	22725	22726	47154	47154					0.027322857834292336
RPPPGQPK	8	Unmodified	_RPPPGQPK_					0	0	0			REV__ENSG00000197870|ENST00000538488|PRB3	REV__ENSG00000197870|ENST00000538488|PRB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.1868591308594	2	438.756144	875.497735	0.36293	0.00015924	0.49866	0.00021879	0.86159	0.00037803	438.75620895715537	33.466	0.52038	33.533	33.266	33.786	0.06636					30	18	2	0	0	0	0.34131	1	6551	6551		12.532	0	1	181660	+		38993	18774	22726	22727	47155	47155					0.05500641682760943
RPPPGQPK	8	Unmodified	_RPPPGQPK_					0	0	0			REV__ENSG00000197870|ENST00000538488|PRB3	REV__ENSG00000197870|ENST00000538488|PRB3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	438.756144	875.497735	0.29651	0.00013009	0.43932	0.00019275	0.73582	0.00032285	438.7562531505913	33.728	0.54321	33.728	33.426	33.969	0	0.12613	-5.6165E-05	NaN	12.532	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189370	+		38994	18774	22726	22727							0.05500641682760943
RPPPGQPK	8	Unmodified	_RPPPGQPK_					0	0	0			REV__ENSG00000197870|ENST00000538488|PRB3	REV__ENSG00000197870|ENST00000538488|PRB3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	438.756144	875.497735	-0.091599	-4.0189E-05	0.5827	0.00025566	0.4911	0.00021547	438.7563345745425	33.479	0.64179	33.545	33.297	33.939	0.0667	-0.056791	6.9652E-05	NaN	12.532	31	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134060	+		38995	18774	22726	22727							0.05500641682760943
RPPPIGAEV	9	Unmodified	_RPPPIGAEV_					0	0	0		ENSG00000143384|ENST00000369026|MCL1;nc|ENSG00000143384|Q07820-2|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.23681640625	2	468.269084	934.523616	-0.35126	-0.00016449	0.59101	0.00027675	0.23974	0.00011226	468.26885485111234	34.32	0.85962	34.32	33.916	34.775	0					50	30	2	0	0	0	0.22674	1	6698	6698		22.736	5.794	1	203090			38996	4510	22727	22728	47156	47156					0.05373491134378128
RPPPIGAEV	9	Unmodified	_RPPPIGAEV_					0	0	0		ENSG00000143384|ENST00000369026|MCL1;nc|ENSG00000143384|Q07820-2|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2362976074219	2	468.269084	934.523616	-0.39165	-0.0001834	-0.55289	-0.0002589	-0.94454	-0.0004423	468.2687507382505	34.238	0.69023	34.304	34.04	34.73	0.06636					43	24	2	0	0	0	0.24289	1	6759	6759		18.146	6.5061	1	184280			38997	4510	22727	22728	47157	47157					0.05373491134378128
RPPPIGAEV	9	Unmodified	_RPPPIGAEV_					0	0	0		ENSG00000143384|ENST00000369026|MCL1;nc|ENSG00000143384|Q07820-2|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.2364807128906	2	468.269084	934.523616	-0.057615	-2.6979E-05	-0.6376	-0.00029857	-0.69521	-0.00032555	468.26858693694214	34.139	0.77596	34.205	34.021	34.797	0.0667					49	27	3	0	0	0	0.20881	1	6729	6729		21.537	0	1	188250			38998	4510	22727	22728	47158	47158					0.05373491134378128
RPPPMRPV	8	Unmodified	_RPPPMRPV_					0	0	0		ENSG00000196220|ENST00000383836|SRGAP3;nc|ENSG00000196220|O43295-2|SRGAP3	ENSG00000196220|ENST00000383836|SRGAP3	ENSG00000196220|ENST00000383836|SRGAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.27392578125	2	475.273647	948.532741	0.39453	0.00018751	0.34896	0.00016585	0.74349	0.00035336	475.27367551534394	91.101	1.1218	91.102	90.899	92.021	0.00047302					99	73	2	0	0	0	0.46022	1	24215	24215		2.3027	0	1	819950			38999	7839	22728	22729	47159	47159					0.05641561219056257
RPPPPLLLR	9	Unmodified	_RPPPPLLLR_					0	0	0			REV__ENST00000497343.5_1_3:160473400-160474084:+|nuORF	REV__ENST00000497343.5_1_3:160473400-160474084:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2821655273438	2	529.845294	1057.67603	0.65314	0.00034607	-2.8015	-0.0014843	-2.1483	-0.0011383	529.8438938597096	44.957	0.37527	45.032	44.808	45.183	0.075047					16	13	2	0	0	0	0.25323	1	9952	9952		6.2058	5.7474	1	118120	+		39000	21685	22729	22730	47160	47160					0.14950311601796784
RPPPQRVEE	9	Unmodified	_RPPPQRVEE_					0	0	0			REV__nc|ENSG00000011451|O95785-2|WIZ	REV__nc|ENSG00000011451|O95785-2|WIZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.29931640625	2	554.298904	1106.58326	0.21235	0.0001177	0.19999	0.00011086	0.41234	0.00022856	554.2989989631744	22.255	0.45885	22.255	22.017	22.476	0					24	15	2	0	0	0	0.3208	1	3082	3082		5.7319	0	1	92759	+		39001	13432	22730	22731	47161	47161					0.0342276207775285
RPPPSPSGTL	10	Unmodified	_RPPPSPSGTL_					0	0	0		nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7773742675781	2	504.777274	1007.53999	0.24675	0.00012455	0.12389	6.2535E-05	0.37063	0.00018709	504.77725933209837	28.631	1.3684	28.631	28.153	29.521	0					114	48	3	0	0	0	0.025736	1	5046	5046		65.474	0	1	714070			39002	3617	22731	22732	47162	47162					0.0365257230048428
RPPPSPSGTL	10	Unmodified	_RPPPSPSGTL_					0	0	0		nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.77752685546875	2	504.777274	1007.53999	0.19977	0.00010084	0.22875	0.00011547	0.42853	0.00021631	504.7772902519794	28.66	1.4026	28.656	28.14	29.543	-0.0042572					111	49	3	0	0	0	0.011792	2	4994	4994;5038		80.676	0	1	888550			39003	3617	22731	22732	47163;47164	47163					0.0365257230048428
RPPPSPSGTL	10	Unmodified	_RPPPSPSGTL_					0	0	0		nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7774658203125	2	504.777274	1007.53999	0.098059	4.9498E-05	0.46043	0.00023242	0.55849	0.00028191	504.77739391704824	28.633	1.3062	28.633	28.188	29.494	0.0004673					109	46	3	0	0	0	0.017732	2	5032	4990;5032		74.2	0	1	819510			39004	3617	22731	22732	47165;47166	47166					0.0365257230048428
RPPPVGHSF	9	Unmodified	_RPPPVGHSF_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.78033447265625	2	497.266876	992.519199	0.31924	0.00015875	-0.41581	-0.00020677	-0.096566	-4.8019E-05	497.2672050481568	23.821	0.78558	23.749	23.448	24.234	-0.072559					45	26	3	0	0	0	0.25779	1	3653	3653		6.2058	0.47393	1	64238			39005	706	22732	22733	47167	47167					0.022640267114752533
RPPQRPHSA	9	Unmodified	_RPPQRPHSA_					0	0	0		ENST00000217964.11_1_X:9433148-9621615:+|nuORF	ENST00000217964.11_1_X:9433148-9621615:+|nuORF	ENST00000217964.11_1_X:9433148-9621615:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3032836914062	2	523.286131	1044.55771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.83	1	90.83	90.33	91.33	0.0003891								0	0	0	0.24715	1	24081	24081		7.2892	2.5332	1				39006	8827	22733	22734	47168	47168					0.037213323459809544
RPPRQLLQQQ	10	Unmodified	_RPPRQLLQQQ_					0	0	0			REV__ENST00000604566.1_1_1:3644156-3648116:+|nuORF	REV__ENST00000604566.1_1_1:3644156-3648116:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5008239746094	3	421.914194	1262.72075	-0.36566	-0.00015428	2.705	0.0011413	2.3394	0.00098701	421.9153619973165	14.007	0.29118	14.007	13.822	14.113	0					20	9	3	0	0	0	0.32167	1	612	612		0.62683	0.39098	1	42945	+		39007	22653	22734	22735	47169	47169					0.09990090677183616
RPPSDNRL	8	Unmodified	_RPPSDNRL_					0	0	0		ENST00000472372.5_1_13:52348123-52351413:-|nuORF	ENST00000472372.5_1_13:52348123-52351413:-|nuORF	ENST00000472372.5_1_13:52348123-52351413:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7599182128906	2	477.759415	953.504277	0.11019	5.2642E-05	1.1744	0.00056108	1.2846	0.00061373	477.75990932842734	16.031	0.63248	15.968	15.781	16.414	-0.062534					30	21	2	0	0	0	0.3415	1	1226	1226		13.042	2.9685	1	96769			39008	10892	22735	22736	47170	47170					0.02566534843469981
RPPSKEAV	8	Unmodified	_RPPSKEAV_					0	0	0		OR5M8|p.S266A|1|0.36|ENSG00000181371|chr11:56490575-56490575|A/C|missense_variant	OR5M8|p.S266A|1|0.36|ENSG00000181371|chr11:56490575-56490575|A/C|missense_variant	OR5M8|p.S266A|1|0.36|ENSG00000181371|chr11:56490575-56490575|A/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.9151306152344	2	442.253434	882.492316	-0.19295	-8.5333E-05	-0.26609	-0.00011768	-0.45904	-0.00020301	442.2532673418584	28.121	0.42758	28.121	27.814	28.241	0					20	14	2	0	0	0	0.34294	1	4897	4897		7.2892	1.5288	1	56686			39009	13037	22736	22737	47171	47171					0.046369181002773985
RPPSPPPAAL	10	Unmodified	_RPPSPPPAAL_					0	0	0		nc|ENSG00000134874|Q86YF9-3|DZIP1	nc|ENSG00000134874|Q86YF9-3|DZIP1	nc|ENSG00000134874|Q86YF9-3|DZIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.78948974609375	2	501.790184	1001.56581	0.56744	0.00028473	-0.60851	-0.00030534	-0.041068	-2.0608E-05	501.78977662636674	55.399	0.88335	55.47	55.164	56.048	0.070885					93	32	4	0	0	0	0.19885	2	13232	13188;13232		32.786	2.1491	1	3069700			39010	12710	22737	22738	47172;47173	47173					0.06509466542752307
RPPSPPPAAL	10	Unmodified	_RPPSPPPAAL_					0	0	0		nc|ENSG00000134874|Q86YF9-3|DZIP1	nc|ENSG00000134874|Q86YF9-3|DZIP1	nc|ENSG00000134874|Q86YF9-3|DZIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7896423339844	2	501.790184	1001.56581	0.44497	0.00022328	-0.14076	-7.0634E-05	0.30421	0.00015265	501.78997086458924	55.559	0.89823	55.54	55.235	56.133	-0.019081					91	32	4	0	0	0	0.19885	2	13300	13248;13300		32.786	2.1491	1	3662400			39011	12710	22737	22738	47174;47175	47175					0.06509466542752307
RPPSRCQL	8	Unmodified	_RPPSRCQL_					0	0	0			REV__ENST00000462073.5_1_22:30688366-30689945:-|nuORF	REV__ENST00000462073.5_1_22:30688366-30689945:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2900390625	2	478.758361	955.502169	0.013164	6.3023E-06	1.047	0.00050127	1.0602	0.00050758	478.7592233217842	16.162	0.43009	16.162	15.918	16.349	0					27	14	2	0	0	0	0.34353	1	1277	1277		4.756	0	1	16563	+		39012	14147	22738	22739	47176	47176					0.022637828340180022
RPPVPLHMV	9	Unmodified	_RPPVPLHMV_					0	0	0		ENST00000427841.5_1_3:195694776-195701406:-|nuORF	ENST00000427841.5_1_3:195694776-195701406:-|nuORF	ENST00000427841.5_1_3:195694776-195701406:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.303955078125	2	523.302404	1044.59026	0.12185	6.3764E-05	2.1931	0.0011476	2.3149	0.0012114	523.3036034302759	12.256	0.26188	12.256	12.135	12.397	0					12	9	2	0	0	0	0.30623	1	75	75		7.9102	0.3012	1	85052			39013	10439	22739	22740	47177	47177					0.06974403424624143
RPPWGTLQ	8	Unmodified	_RPPWGTLQ_					0	0	0			REV__ENST00000449369.5_2_11:47279261-47280796:+|nuORF	REV__ENST00000449369.5_2_11:47279261-47280796:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7721862792969	2	477.761426	953.5083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.491	1	27.479	26.979	27.979	-0.01156								0	0	0	0.35466	1	4670	4670		12.532	0	1		+		39014	21104	22740	22741	47178	47178					0.02968624337199799
RPQASALEL	9	Unmodified	_RPQASALEL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.77740478515625	2	492.777274	983.539994	-0.012233	-6.028E-06	0.31897	0.00015718	0.30674	0.00015115	492.77734864278796	38.891	0.91316	38.891	38.597	39.51	0					76	32	3	0	0	0	0.015027	2	8170	8122;8170		71.708	38.922	1	1547300			39015	977;10095	22741	22742	47179;47180	47180					0.04756572300470907
RPQASALEL	9	Unmodified	_RPQASALEL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.77728271484375	2	492.777274	983.539994	0.31581	0.00015563	-0.032869	-1.6197E-05	0.28294	0.00013943	492.7772110192826	38.784	0.98137	38.877	38.596	39.577	0.09267					80	35	3	0	0	0	0.043711	2	8129	8086;8129		55.235	22.449	1	2010500			39016	977;10095	22741	22742	47181;47182	47182					0.04756572300470907
RPQASALEL	9	Unmodified	_RPQASALEL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.77728271484375	2	492.777274	983.539994	0.51763	0.00025508	-0.20449	-0.00010077	0.31314	0.00015431	492.77710758758747	38.782	0.72182	38.881	38.598	39.319	0.099407					61	25	3	0	0	0	0.015027	3	8123	8076;8123;8171		71.708	38.922	1	1949900			39017	977;10095	22741	22742	47183;47184;47185	47184					0.04756572300470907
RPQASHQLL	9	Unmodified	_RPQASHQLL_					0	0	0		ENST00000494399.5_1_1:45478966-45479784:+|nuORF;ENSG00000126088|ENST00000246337|UROD	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2960815429688	2	525.296165	1048.57778	0.46186	0.00024261	-0.11752	-6.1735E-05	0.34433	0.00018088	525.2959013350154	21.86	0.59498	21.86	21.627	22.222	0					39	21	2	0	0	0	0.11201	2	3009	2963;3009		36.506	13.656	1	305330			39018	3257	22742	22743	47186;47187	47187					0.05543083285942885
RPQASHQLL	9	Unmodified	_RPQASHQLL_					0	0	0		ENST00000494399.5_1_1:45478966-45479784:+|nuORF;ENSG00000126088|ENST00000246337|UROD	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2962036132812	2	525.296165	1048.57778	0.48152	0.00025294	-0.31648	-0.00016624	0.16504	8.6693E-05	525.2958433815181	21.957	0.54722	21.857	21.657	22.205	-0.10034					35	19	2	0	0	0	0.09758	2	3027	2978;3027		38.615	18.373	1	324640			39019	3257	22742	22743	47188;47189	47189					0.05543083285942885
RPQASHQLL	9	Unmodified	_RPQASHQLL_					0	0	0		ENST00000494399.5_1_1:45478966-45479784:+|nuORF;ENSG00000126088|ENST00000246337|UROD	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2962646484375	2	525.296165	1048.57778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.904	1	21.854	21.354	22.354	-0.049377								0	0	0	0.14229	1	2981	2981		36.506	11.107	1				39020	3257	22742	22743	47190	47190					0.05543083285942885
RPQASQRKLQ	10	Unmodified	_RPQASQRKLQ_					0	0	0		ENST00000586659.5_1_19:11275916-11276213:-|nuORF	ENST00000586659.5_1_19:11275916-11276213:-|nuORF	ENST00000586659.5_1_19:11275916-11276213:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.57025146484375	3	404.570427	1210.68945	-0.441	-0.00017842	0.1646	6.659E-05	-0.27641	-0.00011183	404.5703820985294	12.608	0.44942	12.608	12.397	12.847	0					32	14	3	0	0	0	0.41168	1	188	188		0.56317	0.15491	1	65956			39021	12120	22743	22744	47191	47191					0.09253517643082887
RPQDFIAAI	9	Unmodified	_RPQDFIAAI_					0	0	0		nc|ENSG00000106077|Q8NFV4-6|ABHD11;nc|ENSG00000106077|Q8NFV4-4|ABHD11;ENSG00000106077|ENST00000222800|ABHD11	nc|ENSG00000106077|Q8NFV4-6|ABHD11	nc|ENSG00000106077|Q8NFV4-6|ABHD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7879638671875	2	515.787641	1029.56073	0.59086	0.00030476	0.90211	0.0004653	1.493	0.00077005	515.7882463219441	47.716	0.49683	47.716	47.38	47.877	0					40	17	3	0	0	0	0.17277	1	10860	10860		27.629	1.3607	1	790480			39022	2056	22744	22745	47192	47192					0.04713162680127425
RPQDFIAAI	9	Unmodified	_RPQDFIAAI_					0	0	0		nc|ENSG00000106077|Q8NFV4-6|ABHD11;nc|ENSG00000106077|Q8NFV4-4|ABHD11;ENSG00000106077|ENST00000222800|ABHD11	nc|ENSG00000106077|Q8NFV4-6|ABHD11	nc|ENSG00000106077|Q8NFV4-6|ABHD11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7880859375	2	515.787641	1029.56073	0.24581	0.00012679	0.23888	0.00012321	0.48469	0.00025	515.7876815922951	59.172	0.56416	59.263	58.953	59.517	0.091301					48	19	3	0	0	0	0.1939	1	14402	14402		30.637	1.555	1	938730			39023	2056	22744	22745	47193	47193					0.04713162680127425
RPQDGVAVL	9	Unmodified	_RPQDGVAVL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.P889Lfs*40|1|0.02|ENSG00000197879|chr17:1468441-1468442|-/TTGCA|frameshift_variant	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.77197265625	2	477.771991	953.529429	0.36257	0.00017323	-0.1459	-6.9708E-05	0.21667	0.00010352	477.7718351722807	36.788	0.83016	36.788	36.511	37.342	0					67	29	3	0	0	0	0.058995	2	7524	7524;7570		49.554	25.534	1	2020000			39024	8008	22745	22746	47194;47195	47194					0.05080589646047429
RPQDGVAVL	9	Unmodified	_RPQDGVAVL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.P889Lfs*40|1|0.02|ENSG00000197879|chr17:1468441-1468442|-/TTGCA|frameshift_variant	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.77203369140625	2	477.771991	953.529429	0.36303	0.00017344	-0.20983	-0.00010025	0.15319	7.3192E-05	477.7717956560658	36.675	1.1141	36.762	36.491	37.605	0.08741					80	40	3	0	0	0	0.04299	1	7497	7497		55.503	19.376	1	2044600			39025	8008	22745	22746	47196	47196					0.05080589646047429
RPQDGVAVL	9	Unmodified	_RPQDGVAVL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.P889Lfs*40|1|0.02|ENSG00000197879|chr17:1468441-1468442|-/TTGCA|frameshift_variant	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7720947265625	2	477.771991	953.529429	0.66681	0.00031859	-0.42605	-0.00020355	0.24077	0.00011503	477.771714053768	36.688	0.76207	36.781	36.486	37.248	0.093014					75	27	4	0	0	0	0.12279	1	7489	7489		34.932	14.518	1	2166400			39026	8008	22745	22746	47197	47197					0.05080589646047429
RPQDKFLVL	9	Unmodified	_RPQDKFLVL_					0	0	0		nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1;ENSG00000172840|ENST00000311765|PDP2	nc|ENSG00000164951|Q9P0J1-2|PDP1	nc|ENSG00000164951|Q9P0J1-2|PDP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.332763671875	2	558.332216	1114.64988	0.60858	0.00033979	0.47595	0.00026574	1.0845	0.00060553	558.3325538822951	47.058	0.98477	47.058	46.813	47.797	0					62	34	2	0	0	0	0.048637	1	10648	10648		53.404	19.002	1	875340			39027	5907	22746	22747	47198	47198					0.0971399763966474
RPQDKFLVL	9	Unmodified	_RPQDKFLVL_					0	0	0		nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1;ENSG00000172840|ENST00000311765|PDP2	nc|ENSG00000164951|Q9P0J1-2|PDP1	nc|ENSG00000164951|Q9P0J1-2|PDP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3323974609375	2	558.332216	1114.64988	0.37133	0.00020733	0.35444	0.0001979	0.72577	0.00040522	558.3322562817103	46.964	0.92038	47.016	46.679	47.599	0.052574					79	33	3	0	0	0	0.07944	1	10590	10590		41.956	0.11592	1	791040			39028	5907	22746	22747	47199	47199					0.0971399763966474
RPQDKFLVL	9	Unmodified	_RPQDKFLVL_					0	0	0		nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1;ENSG00000172840|ENST00000311765|PDP2	nc|ENSG00000164951|Q9P0J1-2|PDP1	nc|ENSG00000164951|Q9P0J1-2|PDP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3333129882812	2	558.332216	1114.64988	0.77126	0.00043062	-0.041624	-2.324E-05	0.72964	0.00040738	558.332107651684	46.981	0.9059	47.035	46.796	47.702	0.054375					58	32	2	0	0	0	0.069258	1	10601	10601		45.74	3.9002	1	825900			39029	5907	22746	22747	47200	47200					0.0971399763966474
RPQDLKLRD	9	Unmodified	_RPQDLKLRD_					0	0	0		nc|ENSG00000111799|Q99715-2|COL12A1;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;ENST00000474564.1_1_6:75852961-75855988:-|nuORF	nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8150634765625	2	570.827829	1139.64111	0.29969	0.00017107	-0.45743	-0.00026111	-0.15774	-9.0042E-05	570.8274121131594	21.316	0.62223	21.316	21.108	21.731	0					39	21	2	0	0	0	0.26188	1	2838	2838		1.6526	0.32309	1	82134			39030	2389	22747	22748	47201	47201					0.07687024003166698
RPQDLQTEN	9	Unmodified	_RPQDLQTEN_					0	0	0			REV__nc|ENSG00000106336|O75426-2|FBXO24	REV__nc|ENSG00000106336|O75426-2|FBXO24	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.78369140625	2	550.770177	1099.5258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.981	1	19.981	19.481	20.481	0								0	0	0	0.22065	1	2398	2398		15.847	0.5987	1		+		39031	14515	22748	22749	47202	47202					-0.0199812491848661
RPQEGGRITL	10	Unmodified	_RPQEGGRITL_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3217163085938	2	563.820004	1125.62546	0.19698	0.00011106	0.1166	6.574E-05	0.31357	0.0001768	563.8200108327454	26.813	0.47746	26.813	26.558	27.035	0					49	16	4	0	0	0	0.2361	1	4451	4451		28.234	13.828	1	374130			39032	273	22749	22750	47203	47203					0.06766737486145757
RPQEGGRITL	10	Unmodified	_RPQEGGRITL_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8199462890625	2	563.820004	1125.62546	0.32775	0.00018479	-0.23986	-0.00013524	0.087887	4.9552E-05	563.8198179191018	26.838	0.44921	26.816	26.536	26.985	-0.021412					40	15	3	0	0	0	0.18709	1	4455	4455		34.222	14.86	1	384120			39033	273	22749	22750	47204	47204					0.06766737486145757
RPQEGGRITL	10	Unmodified	_RPQEGGRITL_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.8199462890625	2	563.820004	1125.62546	0.37912	0.00021375	-0.23291	-0.00013132	0.14621	8.2435E-05	563.8198676015801	26.835	0.41707	26.824	26.625	27.042	-0.01156					38	14	3	0	0	0	0.049822	1	4463	4463		59.052	34.061	1	328770			39034	273	22749	22750	47205	47205					0.06766737486145757
RPQGKVVAL	9	Unmodified	_RPQGKVVAL_					0	0	0		ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.3058166503906	2	484.306001	966.597449	0.033231	1.6094E-05	0.0095102	4.6059E-06	0.042741	2.07E-05	484.3058840062288	23.387	0.79867	23.387	23.145	23.943	0					60	27	3	0	0	0	0.11461	1	3431	3431		36.127	12.106	1	369100			39035	8040	22750	22751	47206	47206					0.11281459296708363
RPQGKVVAL	9	Unmodified	_RPQGKVVAL_					0	0	0		ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.3057861328125	2	484.306001	966.597449	0.10869	5.2641E-05	-0.18622	-9.0189E-05	-0.077529	-3.7548E-05	484.305768034166	23.484	1.0539	23.399	23.167	24.221	-0.084909					71	36	3	0	0	0	0.21389	1	3466	3466		25.399	5.9603	1	430730			39036	8040	22750	22751	47207	47207					0.11281459296708363
RPQGKVVAL	9	Unmodified	_RPQGKVVAL_					0	0	0		ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.255126953125	2	484.306001	966.597449	0.31143	0.00015083	-0.34794	-0.00016851	-0.036507	-1.768E-05	484.3057142664085	23.503	0.76255	23.464	23.202	23.965	-0.038927					62	26	3	0	0	0	0.20167	1	3450	3450		29.082	12.139	1	452950			39037	8040	22750	22751	47208	47208					0.11281459296708363
RPQGRLSV	8	Unmodified	_RPQGRLSV_					0	0	0			REV__ENST00000269142.9_1_18:23806638-23806755:+|nuORF	REV__ENST00000269142.9_1_18:23806638-23806755:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2642517089844	2	456.772326	911.530098	0.055845	2.5509E-05	1.1621	0.00053083	1.218	0.00055634	456.77367455075574	69.889	0.86655	69.955	69.518	70.384	0.066048					91	30	4	0	0	0	0.33441	1	17641	17641		26.884	1.4843	1	607980	+		39038	19669	22751	22752	47209	47209					0.07079429085740685
RPQHGALR	8	Unmodified	_RPQHGALR_					0	0	0		ENST00000584985.5_1_17:38219164-38233770:+|nuORF	ENST00000584985.5_1_17:38219164-38233770:+|nuORF	ENST00000584985.5_1_17:38219164-38233770:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7698974609375	2	467.770117	933.525681	-0.31556	-0.00014761	0.1493	6.9836E-05	-0.16626	-7.7772E-05	467.7701123601191	13.034	0.40881	13.034	12.874	13.282	0					32	14	3	0	0	0	0.32038	1	304	304		28.487	0	1	223600			39039	12097	22752	22753	47210	47210					0.05625964662851857
RPQHGALR	8	Unmodified	_RPQHGALR_					0	0	0		ENST00000584985.5_1_17:38219164-38233770:+|nuORF	ENST00000584985.5_1_17:38219164-38233770:+|nuORF	ENST00000584985.5_1_17:38219164-38233770:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7698059082031	2	467.770117	933.525681	-0.26289	-0.00012297	0.1332	6.2309E-05	-0.12968	-6.0661E-05	467.77008377851564	13.117	0.54641	13.018	12.894	13.441	-0.099291					34	18	3	0	0	0	0.25425	1	328	328		36.044	9.1605	1	199810			39040	12097	22752	22753	47211	47211					0.05625964662851857
RPQHGALR	8	Unmodified	_RPQHGALR_					0	0	0		ENST00000584985.5_1_17:38219164-38233770:+|nuORF	ENST00000584985.5_1_17:38219164-38233770:+|nuORF	ENST00000584985.5_1_17:38219164-38233770:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7699279785156	2	467.770117	933.525681	-0.20302	-9.4966E-05	-3.1773E-05	-1.4862E-08	-0.20305	-9.4981E-05	467.7700138576725	13.077	0.36762	13.01	12.878	13.245	-0.067496					27	12	3	0	0	0	0.30517	1	313	313		30.225	5.5509	1	220620			39041	12097	22752	22753	47212	47212					0.05625964662851857
RPQHTQECC	9	Unmodified	_RPQHTQECC_					0	0	0		ENST00000316485.11_1_1:62349956-62367018:+|nuORF	ENST00000316485.11_1_1:62349956-62367018:+|nuORF	ENST00000316485.11_1_1:62349956-62367018:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.78369140625	2	551.23185	1100.44915	0.31545	0.00017389	-1.2297	-0.00067784	-0.91424	-0.00050396	551.231369755577	19.991	0.25054	19.991	19.822	20.073	0					12	8	2	0	0	0	0.25526	1	2398	2398		7.9102	3.9658	1	36822			39042	9356	22753	22754	47213	47213					-0.09705963010947016
RPQHTQECC	9	Unmodified	_RPQHTQECC_					0	0	0		ENST00000316485.11_1_1:62349956-62367018:+|nuORF	ENST00000316485.11_1_1:62349956-62367018:+|nuORF	ENST00000316485.11_1_1:62349956-62367018:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	551.23185	1100.44915	0.60884	0.00033561	-0.59456	-0.00032774	0.014284	7.8737E-06	551.7331536545119	20.379	0.13458	20.269	20.215	20.35	-0.11003	0.13889	0.00028825	NaN	7.9102	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66441			39043	9356	22753	22754							-0.09705963010947016
RPQIHGYDL	9	Unmodified	_RPQIHGYDL_					0	0	0		nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-4|ELP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3231811523438	2	549.788173	1097.56179	-0.23091	-0.00012695	1.6036	0.00088166	1.3727	0.00075471	550.2907560318259	35.364	0.55522	35.441	35.033	35.588	0.077377					26	19	2	0	0	0	0.23784	1	7066	7066		19.257	4.4187	1	177940			39044	3807	22754	22755	47214	47214					0.016913770490418756
RPQKLIRSV	9	Unmodified	_RPQKLIRSV_					0	0	0			REV__DNAH7|p.I2326V|1|0.42|ENSG00000118997|chr2:195864679-195864679|T/C|missense_variant	REV__DNAH7|p.I2326V|1|0.42|ENSG00000118997|chr2:195864679-195864679|T/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.261962890625	2	548.851107	1095.68766	0.22504	0.00012351	0.040594	2.228E-05	0.26563	0.00014579	548.8511115154756	15.53	0.33482	15.465	15.333	15.668	-0.064414					16	10	2	0	0	0	0.26257	1	1108	1108		0.52476	0.21773	1	46337	+		39045	13300	22755	22756	47215	47215					0.14364508625135386
RPQKLQVT	8	Unmodified	_RPQKLQVT_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.59417724609375	2	485.295633	968.576714	0.20279	9.8414E-05	0.0035388	1.7173E-06	0.20633	0.00010013	485.2955350903915	24.091	0.76363	24.018	23.563	24.327	-0.072559					35	25	2	0	0	0	0.34353	1	3644	3644		4.756	0	1	93182	+		39046	15579	22756	22757	47216	47216					0.09116868917044485
RPQKPSLEF	9	Unmodified	_RPQKPSLEF_					0	0	0		ENST00000602656.1_1_16:67691843-67692206:-|nuORF;ENST00000602622.5_1_16:67691663-67692242:-|nuORF;ENST00000602860.5_1_16:67691511-67693112:-|nuORF;nc|ENSG00000102977|Q96AP0-2|ACD;ENSG00000102977|ENST00000620761|ACD	ENST00000602656.1_1_16:67691843-67692206:-|nuORF	ENST00000602656.1_1_16:67691843-67692206:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.2848510742188	2	551.306198	1100.59784	0.77042	0.00042474	-0.19696	-0.00010859	0.57345	0.00031615	551.3060533870109	33.937	0.37601	33.937	33.728	34.104	0					23	13	2	0	0	0	0.24636	1	6617	6617		16.149	6.0752	1	102500			39047	1797	22757	22758	47217	47217					0.051568342258860866
RPQKQAAL	8	Unmodified	_RPQKQAAL_					0	0	0			REV__ENSG00000173848|ENST00000355029|NET1	REV__ENSG00000173848|ENST00000355029|NET1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2748107910156	2	456.274701	910.534849	0.23701	0.00010814	-1.1483	-0.00052394	-0.91128	-0.00041579	456.27437111208155	21.006	1.7085	21.006	20.622	22.331	0					172	60	5	0	0	0	0.44389	1	2983	2983		7.9102	1.187	1	8300400	+		39048	17808	22758	22759	47218	47218					0.07600313228499544
RPQLDRLKTQL	11	Unmodified	_RPQLDRLKTQL_					0	0	0		ENST00000518928.1_1_8:143381726-143407541:-|nuORF;nc|ENSG00000171045|Q96NA8-2|TSNARE1;ENSG00000171045|ENST00000524325|TSNARE1	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	ENST00000518928.1_1_8:143381726-143407541:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2649841308594	3	456.60877	1366.80448	-0.67024	-0.00030604	-1.2122	-0.00055349	-1.8824	-0.00085952	456.60821213773187	34.703	0.52726	34.78	34.533	35.06	0.077377					28	18	2	0	0	0	0.33136	1	6858	6858		4.8923	2.9648	1	187220			39049	6504	22759	22760	47219	47219					0.13575202054221336
RPQLETAP	8	Unmodified	_RPQLETAP_					0	0	0			REV__ENST00000376874.8_1_12:123956975-123957059:-|nuORF	REV__ENST00000376874.8_1_12:123956975-123957059:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2437744140625	2	456.250892	910.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.907	1	21.858	21.358	22.358	-0.049377								0	0	0	0.36336	1	2982	2982		8.5933	0.68312	1		+		39050	20495	22760	22761	47220	47220					0.02840614237675254
RPQLKGVVL	9	Unmodified	_RPQLKGVVL_					0	0	0		ENSG00000128626|ENST00000308018|MRPS12	ENSG00000128626|ENST00000308018|MRPS12	ENSG00000128626|ENST00000308018|MRPS12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2930603027344	2	505.329476	1008.6444	0.59716	0.00030176	-0.31228	-0.0001578	0.28489	0.00014396	505.3292912508328	36.998	0.6174	36.998	36.724	37.342	0					59	21	4	0	0	0	0.24688	1	7629	7629		14.838	3.198	1	833490			39051	3383	22761	22762	47221	47221					0.14042318847862134
RPQLKGVVL	9	Unmodified	_RPQLKGVVL_					0	0	0		ENSG00000128626|ENST00000308018|MRPS12	ENSG00000128626|ENST00000308018|MRPS12	ENSG00000128626|ENST00000308018|MRPS12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2942810058594	2	505.329476	1008.6444	0.64253	0.00032469	-0.25272	-0.00012771	0.3898	0.00019698	505.32933077018896	36.844	0.64377	36.937	36.687	37.331	0.093018					55	23	4	0	0	0	0.2451	1	7583	7583		15.847	7.937	1	930040			39052	3383	22761	22762	47222	47222					0.14042318847862134
RPQLLKNAL	9	Unmodified	_RPQLLKNAL_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.8323364257812	2	526.832383	1051.65021	-0.097431	-5.133E-05	-0.17125	-9.022E-05	-0.26868	-0.00014155	526.8321712844668	35.33	0.54718	35.33	35	35.547	0					44	19	3	0	0	0	0.019245	1	7053	7053		65.235	29.108	1	571840			39053	3322	22762	22763	47223	47223					0.12645417359499334
RPQLLKNAL	9	Unmodified	_RPQLLKNAL_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.83203125	2	526.832383	1051.65021	-0.14671	-7.7293E-05	-0.092185	-4.8566E-05	-0.2389	-0.00012586	526.8321981516007	35.227	0.49205	35.303	35.071	35.563	0.075306					46	17	4	0	0	0	0.0033114	1	7028	7028		99.799	41.12	1	595930			39054	3322	22762	22763	47224	47224					0.12645417359499334
RPQLLKNAL	9	Unmodified	_RPQLLKNAL_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8321533203125	2	526.832383	1051.65021	-0.29787	-0.00015693	0.063828	3.3627E-05	-0.23404	-0.0001233	526.8323347769337	35.192	0.46272	35.27	35.033	35.495	0.077377					41	16	3	0	0	0	0.0042343	1	7017	7017		92.491	33.813	1	590550			39055	3322	22762	22763	47225	47225					0.12645417359499334
RPQLPQVL	8	Unmodified	_RPQLPQVL_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;nc|ENSG00000076321|Q9Y2M5-2|KLHL20;KLHL20|p.K600Nfs*2|1|0.05|ENSG00000076321|chr1:173785216-173785217|-/CT|frameshift_variant;KLHL20|p.M601Rfs*9|1|0.05|ENSG00000076321|chr1:173785217-173785218|-/CGACTAAGATGTT|frameshift_variant;ENSG00000076321|ENST00000209884|KLHL20	nc|ENSG00000127463|Q8N766-4|EMC1;KLHL20|p.K600Nfs*2|1|0.05|ENSG00000076321|chr1:173785216-173785217|-/CT|frameshift_variant	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.792724609375	2	475.792727	949.5709	0.23487	0.00011175	-0.64322	-0.00030604	-0.40835	-0.00019429	475.7926031782424	49.221	1.1092	49.266	48.716	49.825	0.044891					107	40	4	0	0	0	0.27124	1	11321	11321		34.102	1.797	1	1097400			39056	3320;1062	22763	22764	47226	47226					0.09409770405375184
RPQLPVQL	8	Unmodified	_RPQLPVQL_					0	0	0		ENST00000542008.1_1_19:58144645-58145570:+|nuORF;nc|ENSG00000121417|Q13398|ZNF211;ENSG00000121417|ENST00000240731|ZNF211;nc|ENSG00000121417|Q13398-8|ZNF211	ENST00000542008.1_1_19:58144645-58145570:+|nuORF	ENST00000542008.1_1_19:58144645-58145570:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.7927551269531	2	475.792727	949.5709	0.27415	0.00013044	-0.88101	-0.00041918	-0.60686	-0.00028874	475.7925465815884	49.196	1.0193	49.196	48.773	49.793	0					84	36	4	0	0	0	0.27124	1	11354	11354		34.102	0	1	1024600			39057	2997	22764	22765	47227	47227					0.09409770405375184
RPQLPVQL	8	Unmodified	_RPQLPVQL_					0	0	0		ENST00000542008.1_1_19:58144645-58145570:+|nuORF;nc|ENSG00000121417|Q13398|ZNF211;ENSG00000121417|ENST00000240731|ZNF211;nc|ENSG00000121417|Q13398-8|ZNF211	ENST00000542008.1_1_19:58144645-58145570:+|nuORF	ENST00000542008.1_1_19:58144645-58145570:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7927551269531	2	475.792727	949.5709	0.10358	4.9283E-05	-0.76482	-0.00036389	-0.66123	-0.00031461	475.7926620000756	49.176	0.98735	49.208	48.743	49.73	0.032043					97	35	4	0	0	0	0.20518	1	11327	11327		42.095	0	1	977700			39058	2997	22764	22765	47228	47228					0.09409770405375184
RPQLRSVLL	9	Unmodified	_RPQLRSVLL_					0	0	0		ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2;ENST00000591718.1_1_19:55966993-55972941:-|nuORF	ENSG00000063241|ENST00000425675|ISOC2	ENSG00000063241|ENST00000425675|ISOC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3457641601562	2	541.345658	1080.67676	0.25642	0.00013881	0.20702	0.00011207	0.46345	0.00025088	541.3457090960271	42.23	1.2488	42.23	41.9	43.149	0					123	44	4	0	0	0	0.011693	4	9202	9105;9151;9202;9253		76.825	49.196	1	12642000			39059	773	22765	22766	47229;47230;47231;47232	47231					0.13965106250861936
RPQLRSVLL	9	Unmodified	_RPQLRSVLL_					0	0	0		ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2;ENST00000591718.1_1_19:55966993-55972941:-|nuORF	ENSG00000063241|ENST00000425675|ISOC2	ENSG00000063241|ENST00000425675|ISOC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.345703125	2	541.345658	1080.67676	0.6222	0.00033682	-0.34506	-0.0001868	0.27714	0.00015003	541.3454753700825	41.971	1.2586	42.061	41.829	43.088	0.090252					114	45	4	0	0	0	0.014206	4	9104	9058;9104;9149;9195		72.968	38.566	1	10578000			39060	773	22765	22766	47233;47234;47235;47236	47234					0.13965106250861936
RPQLRSVLL	9	Unmodified	_RPQLRSVLL_					0	0	0		ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2;ENST00000591718.1_1_19:55966993-55972941:-|nuORF	ENSG00000063241|ENST00000425675|ISOC2	ENSG00000063241|ENST00000425675|ISOC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.3460083007812	2	541.345658	1080.67676	0.75988	0.00041136	-0.37039	-0.00020051	0.3895	0.00021085	541.3454667063728	41.938	1.3525	42.034	41.748	43.1	0.096622					129	48	5	0	0	0	0.0079761	3	9069	9026;9069;9113		82.529	40.69	1	10554000			39061	773	22765	22766	47237;47238;47239	47238					0.13965106250861936
RPQNIETLQ	9	Unmodified	_RPQNIETLQ_					0	0	0		nc|ENSG00000077327|O75602-4|SPAG6;nc|ENSG00000077327|O75602-2|SPAG6;ENSG00000077327|ENST00000376624|SPAG6;nc|ENSG00000077327|O75602-3|SPAG6	nc|ENSG00000077327|O75602-4|SPAG6	nc|ENSG00000077327|O75602-4|SPAG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.7835693359375	2	549.798737	1097.58292	0.28583	0.00015715	-0.03422	-1.8814E-05	0.25161	0.00013833	549.7986135326986	19.701	0.4984	19.701	19.461	19.96	0					44	17	4	0	0	0	0.28674	1	2350	2350		10.824	0	1	142820			39062	1086	22766	22767	47240	47240					0.03803342357900874
RPQNIETLQ	9	Unmodified	_RPQNIETLQ_					0	0	0		nc|ENSG00000077327|O75602-4|SPAG6;nc|ENSG00000077327|O75602-2|SPAG6;ENSG00000077327|ENST00000376624|SPAG6;nc|ENSG00000077327|O75602-3|SPAG6	nc|ENSG00000077327|O75602-4|SPAG6	nc|ENSG00000077327|O75602-4|SPAG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.78369140625	2	549.798737	1097.58292	0.55941	0.00030756	-0.074305	-4.0853E-05	0.4851	0.00026671	549.7986029048253	19.777	0.60517	19.721	19.485	20.09	-0.055691					46	21	3	0	0	0	0.25314	2	2372	2372;2419		15.847	0	1	208910			39063	1086	22766	22767	47241;47242	47241					0.03803342357900874
RPQNLPGLT	9	Unmodified	_RPQNLPGLT_					0	0	0			REV__ENST00000590758.3_1_17:42883048-42908178:-|nuORF	REV__ENST00000590758.3_1_17:42883048-42908178:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.78668212890625	2	498.285266	994.555979	0.48517	0.00024175	-4.2956	-0.0021404	-3.8104	-0.0018987	498.2830669950041	36.746	0.5688	36.833	36.706	37.275	0.08741					28	20	2	0	0	0	0.24311	1	7483	7483		11.64	0	1	840890	+		39064	22555	22767	22768	47243	47243					0.058482785373598745
RPQPGRENF	9	Unmodified	_RPQPGRENF_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.7835693359375	2	550.783422	1099.55229	0.54493	0.00030014	-0.11288	-6.2175E-05	0.43205	0.00023796	550.7833607059076	20.089	0.64645	19.973	19.67	20.316	-0.11592					60	23	4	0	0	0	0.069366	1	2459	2459		45.7	15.063	1	521920			39065	5369	22768	22769	47244	47244					0.006496087635014192
RPQPLAAA	8	Unmodified	_RPQPLAAA_					0	0	0			REV__ENST00000602321.5_1_16:67682228-67682996:+|nuORF	REV__ENST00000602321.5_1_16:67682228-67682996:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.5486145019531	2	412.24287	822.471186	0.24138	9.9506E-05	0.094041	3.8768E-05	0.33542	0.00013827	412.2424657143504	17.02	0.21967	16.96	16.859	17.079	-0.060429					10	7	2	0	0	0	0.34247	1	1505	1505		4.756	0	1	18187	+		39066	22639	22769	22770	47245	47245					0.05284952791419073
RPQPQTLQL	9	Unmodified	_RPQPQTLQL_					0	0	0		ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3737182617188	2	540.811648	1079.60874	0.13352	7.2211E-05	-0.68355	-0.00036967	-0.55002	-0.00029746	540.8111210816038	39.502	0.64133	39.502	39.189	39.831	0					53	23	3	0	0	0	0.20381	1	8324	8324		23.79	12.149	1	431190			39067	1904	22770	22771	47246	47246					0.07212236600184951
RPQPQTLQL	9	Unmodified	_RPQPQTLQL_					0	0	0		ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.373779296875	2	540.811648	1079.60874	0.32762	0.00017718	-0.66274	-0.00035842	-0.33512	-0.00018124	540.8111493002219	39.3	0.54837	39.393	39.201	39.75	0.09267					44	19	3	0	0	0	0.22701	1	8274	8274		23.79	8.5413	1	521440			39068	1904	22770	22771	47247	47247					0.07212236600184951
RPQPVKSEL	9	Unmodified	_RPQPVKSEL_					0	0	0		ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2	ENSG00000140044|ENST00000651602|JDP2	ENSG00000140044|ENST00000651602|JDP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3057861328125	2	527.306198	1052.59784	0.55273	0.00029146	-0.70922	-0.00037398	-0.1565	-8.2521E-05	527.3059223064568	21.482	0.59257	21.482	21.138	21.731	0					33	20	2	0	0	0	0.27726	1	2892	2892		12.241	6.0349	1	98037			39069	4279	22771	22772	47248	47248					0.07364834225904815
RPQPVKSEL	9	Unmodified	_RPQPVKSEL_					0	0	0		ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2	ENSG00000140044|ENST00000651602|JDP2	ENSG00000140044|ENST00000651602|JDP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3062744140625	2	527.306198	1052.59784	0.57188	0.00030156	-0.81415	-0.00042931	-0.24227	-0.00012775	527.3057983244266	21.542	0.49444	21.442	21.188	21.682	-0.10034					29	17	2	0	0	0	0.15763	2	2877	2877;2904		29.841	15.935	1	103440			39070	4279	22771	22772	47249;47250	47249					0.07364834225904815
RPQPVKSEL	9	Unmodified	_RPQPVKSEL_					0	0	0		ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2	ENSG00000140044|ENST00000651602|JDP2	ENSG00000140044|ENST00000651602|JDP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3062744140625	2	527.306198	1052.59784	0.51637	0.00027229	-0.65638	-0.00034611	-0.14001	-7.3828E-05	527.3059209550727	21.487	0.4542	21.437	21.207	21.661	-0.049377					27	15	2	0	0	0	0.13296	1	2850	2850		33.445	15.299	1	115630			39071	4279	22771	22772	47251	47251					0.07364834225904815
RPQQKMQI	8	Unmodified	_RPQQKMQI_					0	0	0			REV__CCDC61|p.Q367P|1|0.27|ENSG00000104983|chr19:46016702-46016702|A/C|missense_variant	REV__CCDC61|p.Q367P|1|0.27|ENSG00000104983|chr19:46016702-46016702|A/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.78759765625	2	514.787118	1027.55968	0.24328	0.00012524	1.6939	0.000872	1.9372	0.00099724	514.7881313243801	19.955	0.51838	19.955	19.574	20.092	0					33	18	2	0	0	0	0.46022	1	2386	2386		2.3027	0	1	93798	+		39072	13143	22772	22773	47252	47252					0.04700625039595252
RPQQRELE	8	Unmodified	_RPQQRELE_					0	0	0		ENST00000506259.5_1_5:177631574-177631742:+|nuORF	ENST00000506259.5_1_5:177631574-177631742:+|nuORF	ENST00000506259.5_1_5:177631574-177631742:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2833862304688	2	528.283254	1054.55196	0.22113	0.00011682	0.35423	0.00018713	0.57536	0.00030395	528.2833763347198	16.407	1.0356	16.293	16.02	17.056	-0.11434					99	36	4	0	0	0	0.45431	1	1313	1313		4.3292	0.38484	1	370640			39073	11324	22773	22774	47253	47253					0.02686189043674858
RPQRATSNVF	10	Unmodified	_RPQRATSNVF_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B;MYL12A|p.D26Efs*15|1|0.04|ENSG00000101608|chr18:3253324-3253325|-/AT|frameshift_variant;MYL12A|p.Q27Kfs*18|1|0.04|ENSG00000101608|chr18:3253325-3253326|-/AAAACAATGATTAA|frameshift_variant;ENST00000577510.5_1_18:3252320-3253446:+|nuORF;ENST00000580353.1_1_18:3247898-3253446:+|nuORF;nc|ENSG00000101335|P24844-2|MYL9;ENSG00000101335|ENST00000279022|MYL9	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3177490234375	2	588.317628	1174.6207	0.33006	0.00019418	0.090171	5.3049E-05	0.42023	0.00024723	588.3176619130461	21.815	1.2264	21.815	21.368	22.594	0					124	43	4	0	0	0	0.0041921	4	2947	2893;2947;2992;3041		96.367	61.435	1	2392800			39074	1712	22774	22775	47254;47255;47256;47257	47255					0.04037853343356801
RPQRATSNVF	10	Unmodified	_RPQRATSNVF_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B;MYL12A|p.D26Efs*15|1|0.04|ENSG00000101608|chr18:3253324-3253325|-/AT|frameshift_variant;MYL12A|p.Q27Kfs*18|1|0.04|ENSG00000101608|chr18:3253325-3253326|-/AAAACAATGATTAA|frameshift_variant;ENST00000577510.5_1_18:3252320-3253446:+|nuORF;ENST00000580353.1_1_18:3247898-3253446:+|nuORF;nc|ENSG00000101335|P24844-2|MYL9;ENSG00000101335|ENST00000279022|MYL9	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.3178100585938	2	588.317628	1174.6207	0.34387	0.0002023	0.076496	4.5004E-05	0.42036	0.00024731	588.3176703353704	21.894	1.278	21.794	21.471	22.749	-0.10034					129	46	4	0	0	0	0.0041921	4	2972	2926;2972;3017;3067		96.367	54.411	1	2667600			39075	1712	22774	22775	47258;47259;47260;47261	47259					0.04037853343356801
RPQRATSNVF	10	Unmodified	_RPQRATSNVF_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B;MYL12A|p.D26Efs*15|1|0.04|ENSG00000101608|chr18:3253324-3253325|-/AT|frameshift_variant;MYL12A|p.Q27Kfs*18|1|0.04|ENSG00000101608|chr18:3253325-3253326|-/AAAACAATGATTAA|frameshift_variant;ENST00000577510.5_1_18:3252320-3253446:+|nuORF;ENST00000580353.1_1_18:3247898-3253446:+|nuORF;nc|ENSG00000101335|P24844-2|MYL9;ENSG00000101335|ENST00000279022|MYL9	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.31787109375	2	588.317628	1174.6207	0.27399	0.00016119	0.11611	6.8308E-05	0.3901	0.0002295	588.3176764523948	21.833	1.324	21.783	21.461	22.785	-0.049377					123	46	4	0	0	0	0.005261	5	2970	2920;2970;3013;3060;3109		90.135	55.203	1	2490300			39076	1712	22774	22775	47262;47263;47264;47265;47266	47263					0.04037853343356801
RPQRRFARPV	10	Unmodified	_RPQRRFARPV_					0	0	0			REV__ENSG00000142082|ENST00000382743|SIRT3	REV__ENSG00000142082|ENST00000382743|SIRT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8819580078125	2	641.883804	1281.75306	0.010778	6.918E-06	-0.99019	-0.00063559	-0.97941	-0.00062867	641.8829400044114	98.645	0.61124	98.645	98.334	98.945	0					113	70	2	0	0	0	0.41085	1	26384	26384		1.4819	0	1	117030	+		39077	16100	22775	22776	47267	47267					0.1234492287080684
RPQSAISSF	9	Unmodified	_RPQSAISSF_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.228759765625	2	496.761623	991.508694	0.89989	0.00044703	0.45725	0.00022715	1.3571	0.00067417	496.76186152352125	33.734	0.85432	33.8	33.38	34.235	0.06636					55	30	2	0	0	0	0.2322	1	6582	6582		14.838	0	1	251380			39078	3910	22776	22777	47268	47268					0.012599992663808735
RPQSGANGL	9	Unmodified	_RPQSGANGL_					0	0	0		ENSG00000164096|ENST00000504110|C4orf3;nc|nan|Q8WVX3-2|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2381896972656	2	450.238316	898.462078	0.088297	3.9755E-05	-0.43409	-0.00019545	-0.3458	-0.00015569	450.23805168253364	16.388	0.80255	16.388	16.123	16.925	0					81	27	4	0	0	0	0.0010968	3	1331	1283;1331;1377		121.53	50.4	1	850290			39079	5788	22777	22778	47269;47270;47271	47270					0.008785594351024884
RPQSGANGL	9	Unmodified	_RPQSGANGL_					0	0	0		ENSG00000164096|ENST00000504110|C4orf3;nc|nan|Q8WVX3-2|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2381286621094	2	450.238316	898.462078	-0.028502	-1.2833E-05	-0.17689	-7.9642E-05	-0.20539	-9.2475E-05	450.2381738831727	16.542	0.77227	16.428	16.139	16.912	-0.11434					84	27	4	0	0	0	0.001957	4	1329	1329;1374;1421;1476		110.55	49.195	1	866480			39080	5788	22777	22778	47272;47273;47274;47275	47272					0.008785594351024884
RPQSGANGL	9	Unmodified	_RPQSGANGL_					0	0	0		ENSG00000164096|ENST00000504110|C4orf3;nc|nan|Q8WVX3-2|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2381591796875	2	450.238316	898.462078	0.16483	7.4211E-05	-0.34304	-0.00015445	-0.17821	-8.0238E-05	450.23809409125073	16.406	0.79067	16.343	16.094	16.885	-0.062534					82	27	4	0	0	0	0.0028542	3	1300	1300;1344;1386		103.42	42.062	1	908870			39081	5788	22777	22778	47276;47277;47278	47276					0.008785594351024884
RPQSGRVL	8	Unmodified	_RPQSGRVL_					0	0	0		ENSG00000112667|ENST00000230431|DNPH1	ENSG00000112667|ENST00000230431|DNPH1	ENSG00000112667|ENST00000230431|DNPH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7721252441406	2	456.772326	911.530098	-0.13622	-6.222E-05	1.6593	0.00075793	1.5231	0.00069571	456.7726620642811	15.553	0.26602	15.553	15.413	15.679	0					18	8	3	0	0	0	0.41087	1	1063	1063		18.146	3.3081	1	68448			39082	2450	22778	22779	47279	47279					0.07079429085752054
RPQSGRVL	8	Unmodified	_RPQSGRVL_					0	0	0		ENSG00000112667|ENST00000230431|DNPH1	ENSG00000112667|ENST00000230431|DNPH1	ENSG00000112667|ENST00000230431|DNPH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	456.772326	911.530098	-0.085032	-3.884E-05	2.0139	0.00091987	1.9288	0.00088103	456.7730933944273	15.615	0.24385	15.55	15.424	15.668	-0.064413	0.0018111	2.2618E-05	NaN	18.146	19	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78007			39083	2450	22778	22779							0.07079429085752054
RPQSHLQLLR	10	Unmodified	_RPQSHLQLLR_					0	0	0		ENST00000292852.8_1_19:39437129-39440720:-|nuORF	ENST00000292852.8_1_19:39437129-39440720:-|nuORF	ENST00000292852.8_1_19:39437129-39440720:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.373046875	2	624.370195	1246.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.392	1	98.454	97.954	98.954	0.061516								0	0	0	0.38166	1	26336	26336		1.4819	0	1				39084	9164	22779	22780	47280	47280					0.11234394539792447
RPQSLLVT	8	Unmodified	_RPQSLLVT_					0	0	0		ENST00000393409.2_1_3:126755324-126755609:+|nuORF	ENST00000393409.2_1_3:126755324-126755609:+|nuORF	ENST00000393409.2_1_3:126755324-126755609:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.263916015625	2	457.276909	912.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.224	1	69.292	68.792	69.792	0.067535								0	0	0	0.37078	1	17478	17478		5.2307	0	1				39085	10048	22780	22781	47281	47281					0.07949777651447221
RPQSVTNI	8	Unmodified	_RPQSVTNI_					0	0	0			REV__ENSG00000133858|ENST00000378743|ZFC3H1	REV__ENSG00000133858|ENST00000378743|ZFC3H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.1944580078125	2	457.756341	913.498129	-0.19473	-8.9138E-05	0.15627	7.1534E-05	-0.038458	-1.7604E-05	457.75621214576654	27.761	0.87982	27.74	27.215	28.095	-0.021412					49	30	2	0	0	0	0.31862	1	4812	4812		17.443	8.9983	1	275060	+		39086	15640	22781	22782	47282	47282					0.03792016611953386
RPQTGLSFL	9	Unmodified	_RPQTGLSFL_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.78814697265625	2	509.787641	1017.56073	0.40391	0.00020591	0.75816	0.0003865	1.1621	0.00059241	509.78780950840337	53.047	0.85156	53.047	52.743	53.595	0					56	31	2	0	0	0	0.013404	1	12472	12472		74.2	16.478	1	4970400			39087	459	22782	22783	47283	47283					0.05265162680132107
RPQTGLSFL	9	Unmodified	_RPQTGLSFL_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.78790283203125	2	509.787641	1017.56073	0.54046	0.00027552	0.53648	0.00027349	1.0769	0.00054901	509.78775022937674	53.04	0.86592	53.097	52.772	53.638	0.056255					57	31	2	0	0	0	0.026579	1	12505	12505		61.602	12.048	1	4519200			39088	459	22782	22783	47284	47284					0.05265162680132107
RPQTGLSFL	9	Unmodified	_RPQTGLSFL_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7879638671875	2	509.787641	1017.56073	0.33525	0.00017091	0.90544	0.00046158	1.2407	0.00063248	509.78791898932906	53.208	0.98262	53.198	52.889	53.872	-0.0096092					63	36	2	0	0	0	0.026579	2	12562	12562;12609		61.602	12.048	1	5688900			39089	459	22782	22783	47285;47286	47285					0.05265162680132107
RPQTPAAAARR	11	Unmodified	_RPQTPAAAARR_					0	0	0		ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8443603515625	2	597.844345	1193.67414	0.42471	0.00025391	-0.05195	-3.1058E-05	0.37276	0.00022285	597.8442501171078	17.548	0.92576	17.548	17.151	18.077	0					67	31	3	0	0	0	0.47825	1	1610	1610		0.96228	0.43751	1	120050			39090	4812	22783	22784	47287	47287					0.08504650845839024
RPQVAKTLL	9	Unmodified	_RPQVAKTLL_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.8113403320312	2	513.326934	1024.63931	0.035298	1.8119E-05	0.061911	3.178E-05	0.097209	4.99E-05	513.3267530116646	31.075	0.57191	31.103	30.841	31.413	0.027946					36	20	3	0	0	0	0.24848	1	5742	5742		13.906	3.0821	1	248380			39091	1420	22784	22785	47288	47288					0.12798014985241934
RPRAADLL	8	Unmodified	_RPRAADLL_					0	0	0		nc|ENSG00000107968|P41279-2|MAP3K8;ENSG00000107968|ENST00000263056|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	nc|ENSG00000107968|P41279-2|MAP3K8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.27459716796875	2	456.274701	910.534849	0.37166	0.00016958	-1.2307	-0.00056152	-0.859	-0.00039194	456.2743197125574	21.184	1.6588	21.074	20.753	22.412	-0.11003					162	59	5	0	0	0	0.39068	1	2907	2907		20.454	0	1	10036000			39092	2158	22785	22786	47289	47289					0.07600313228499544
RPRAALWT	8	Unmodified	_RPRAALWT_					0	0	0		ENST00000421285.3_1_15:72957287-72958024:+|nuORF	ENST00000421285.3_1_15:72957287-72958024:+|nuORF	ENST00000421285.3_1_15:72957287-72958024:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.26812744140625	2	485.782693	969.550834	0.32171	0.00015628	1.4937	0.00072563	1.8154	0.00088191	485.78332665940366	88.762	0.56796	88.851	88.574	89.142	0.089195					42	23	3	0	0	0	0.33993	1	23403	23403		16.942	1.0951	1	226190			39093	10371	22786	22787	47290	47290					0.06484019465392521
RPRAARVEVK	10	Unmodified	_RPRAARVEVK_					0	0	0			REV__ENST00000361531.6_1_1:156708429-156710862:-|nuORF	REV__ENST00000361531.6_1_1:156708429-156710862:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.364990234375	2	591.364913	1180.71527	0.19894	0.00011764	0.15152	8.9601E-05	0.35045	0.00020724	591.3648886592592	24.538	0.60285	24.501	24.224	24.827	-0.037083					46	20	3	0	0	0	0.36698	1	3779	3779		9.544	1.3884	1	228070	+		39094	20283	22787	22788	47291	47291					0.1321441188533754
RPRAASLVA	9	Unmodified	_RPRAASLVA_					0	0	0			REV__ENST00000373509.5_1_6:37137999-37138269:+|nuORF	REV__ENST00000373509.5_1_6:37137999-37138269:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.7878112792969	2	470.787976	939.561398	0.041554	1.9563E-05	-0.61095	-0.00028763	-0.56939	-0.00026806	470.78800307003576	17.02	1.4385	17.02	16.72	18.158	0					141	49	6	0	0	0	0.28225	1	1656	1656		11.495	0	1	6838000	+		39095	20438	22788	22789	47292	47292					0.0892000211983941
RPRAASLVA	9	Unmodified	_RPRAASLVA_					0	0	0			REV__ENST00000373509.5_1_6:37137999-37138269:+|nuORF	REV__ENST00000373509.5_1_6:37137999-37138269:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.7878112792969	2	470.787976	939.561398	-0.048295	-2.2737E-05	-0.58099	-0.00027352	-0.62929	-0.00029626	470.78798877127866	17.194	1.4945	17.077	16.772	18.267	-0.11739					155	52	6	0	0	0	0.28225	1	1718	1718		11.495	0	1	6278200	+		39096	20438	22788	22789	47293	47293					0.0892000211983941
RPRAASLVA	9	Unmodified	_RPRAASLVA_					0	0	0			REV__ENST00000373509.5_1_6:37137999-37138269:+|nuORF	REV__ENST00000373509.5_1_6:37137999-37138269:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.787841796875	2	470.787976	939.561398	0.28786	0.00013552	-0.8677	-0.0004085	-0.57984	-0.00027298	470.78786306946085	17.128	1.2462	17.068	16.731	17.978	-0.060431					156	44	7	0	0	0	0.28225	2	1682	1682;1736		11.495	0	1	6148600	+		39097	20438	22788	22789	47294;47295	47294					0.0892000211983941
RPRAATVV	8	Unmodified	_RPRAATVV_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000592800.5_2_17:66526404-66526587:+|nuORF;ENST00000586541.5_2_17:66524793-66526587:+|nuORF;ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.269287109375	2	435.269419	868.524284	-0.13739	-5.9801E-05	-0.26468	-0.00011521	-0.40206	-0.00017501	435.2692818629393	16.771	1.2282	16.771	16.491	17.719	0					109	42	4	0	0	0	0.20663	1	1445	1445		41.84	14.956	1	2682900			39098	2226;7737	22789	22790	47296	47296					0.08476330574092117
RPRAATVV	8	Unmodified	_RPRAATVV_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000592800.5_2_17:66526404-66526587:+|nuORF;ENST00000586541.5_2_17:66524793-66526587:+|nuORF;ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2691650390625	2	435.269419	868.524284	-0.20024	-8.7156E-05	-0.25395	-0.00011053	-0.45418	-0.00019769	435.2692652019156	16.919	1.2524	16.804	16.476	17.729	-0.11434					126	44	4	0	0	0	0.30157	1	1446	1446		30.637	5.2372	1	2575400			39099	2226;7737	22789	22790	47297	47297					0.08476330574092117
RPRAATVV	8	Unmodified	_RPRAATVV_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000592800.5_2_17:66526404-66526587:+|nuORF;ENST00000586541.5_2_17:66524793-66526587:+|nuORF;ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	435.269419	868.524284	-0.0099112	-4.3141E-06	-0.42129	-0.00018337	-0.4312	-0.00018769	435.26922584533986	16.88	1.2953	16.817	16.495	17.79	-0.062532	0.019446	-9.824E-05	NaN	41.84	123	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3030400			39100	2226;7737	22789	22790							0.08476330574092117
RPRAATVVA	9	Unmodified	_RPRAATVVA_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000592800.5_2_17:66526404-66526587:+|nuORF;ENST00000586541.5_2_17:66524793-66526587:+|nuORF;ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.7882385253906	2	470.787976	939.561398	0.041554	1.9563E-05	-0.61095	-0.00028763	-0.56939	-0.00026806	470.78800307003576	17.02	1.4385	17.02	16.72	18.158	0					141	49	6	0	0	0	0.020233	4	1514	1471;1514;1561;1608		63.961	12.331	1	6838000			39101	2226;7737	22790	22791	47298;47299;47300;47301	47299					0.08920002119850778
RPRAATVVA	9	Unmodified	_RPRAATVVA_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000592800.5_2_17:66526404-66526587:+|nuORF;ENST00000586541.5_2_17:66524793-66526587:+|nuORF;ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.7876892089844	2	470.787976	939.561398	-0.048295	-2.2737E-05	-0.58099	-0.00027352	-0.62929	-0.00029626	470.78798877127866	17.194	1.4945	17.077	16.772	18.267	-0.11739					155	52	6	0	0	0	0.018449	4	1522	1522;1566;1612;1658		66.457	20.757	1	6278200			39102	2226;7737	22790	22791	47302;47303;47304;47305	47302					0.08920002119850778
RPRAATVVA	9	Unmodified	_RPRAATVVA_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;ENST00000592800.5_2_17:66526404-66526587:+|nuORF;ENST00000586541.5_2_17:66524793-66526587:+|nuORF;ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000108946|ENST00000589228|PRKAR1A;ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.7881164550781	2	470.787976	939.561398	0.28786	0.00013552	-0.8677	-0.0004085	-0.57984	-0.00027298	470.78786306946085	17.128	1.2462	17.068	16.731	17.978	-0.060431					156	44	7	0	0	0	0.014206	4	1543	1497;1543;1593;1637		72.968	21.338	1	6148600			39103	2226;7737	22790	22791	47306;47307;47308;47309	47307					0.08920002119850778
RPRADTGHAFL	11	Unmodified	_RPRADTGHAFL_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.8104858398438	2	620.830903	1239.64725	0.13084	8.123E-05	-0.47637	-0.00029575	-0.34553	-0.00021452	620.8307912832454	25.655	0.23659	25.655	25.504	25.741	0					12	7	2	0	0	0	0.44088	1	4110	4110		7.1017	3.5052	1	79749			39104	7872	22791	22792	47310	47310					0.037015422346939886
RPRADTGHAFL	11	Unmodified	_RPRADTGHAFL_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.810791015625	2	620.830903	1239.64725	-0.030035	-1.8646E-05	-0.21804	-0.00013537	-0.24807	-0.00015401	620.8313304603138	25.781	0.24966	25.758	25.552	25.802	-0.022238					12	8	2	0	0	0	0.44088	1	4128	4128		7.1017	1.3699	1	75805			39105	7872	22791	22792	47311	47311					0.037015422346939886
RPRAGASISTL	11	Unmodified	_RPRAGASISTL_					0	0	0		ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8275756835938	2	564.827829	1127.64111	0.14185	8.012E-05	-1.058	-0.00059761	-0.91618	-0.00051749	564.8273896493707	27.279	0.86058	27.279	26.979	27.84	0					59	19	4	0	0	0	0.32895	1	4571	4571		19.626	0.36897	1	1347600			39106	3676	22792	22793	47312	47312					0.08239024003182749
RPRAGASISTL	11	Unmodified	_RPRAGASISTL_					0	0	0		ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.827829	1127.64111	0.19833	0.00011202	-1.1607	-0.00065557	-0.96232	-0.00054354	564.8273310160475	27.249	0.68206	27.228	26.985	27.667	-0.021412	-0.028405	-5.9139E-06	NaN	19.626	51	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1586900			39107	3676	22792	22793							0.08239024003182749
RPRAGASISTL	11	Unmodified	_RPRAGASISTL_					0	0	0		ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	ENST00000519313.5_1_5:150110976-150138143:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	564.827829	1127.64111	0.13244	7.4806E-05	-1.2724	-0.00071867	-1.1399	-0.00064387	564.8272437695642	27.274	0.62992	27.262	26.984	27.614	-0.01156	0.0058474	-0.00013212	NaN	19.626	50	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1511100			39108	3676	22792	22793							0.08239024003182749
RPRAGPAGP	9	Unmodified	_RPRAGPAGP_					0	0	0		nc|ENSG00000112425|O95278-4|EPM2A	nc|ENSG00000112425|O95278-4|EPM2A	nc|ENSG00000112425|O95278-4|EPM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.7510986328125	2	439.751393	877.488233	-0.22321	-9.8156E-05	0.13996	6.1549E-05	-0.083245	-3.6607E-05	439.75130842628624	14.435	0.83141	14.33	13.991	14.823	-0.10466					65	28	4	0	0	0	0.079066	1	718	718		42.095	7.9921	1	407870			39109	12657	22793	22794	47313	47313					0.04458873397231855
RPRAGPAGP	9	Unmodified	_RPRAGPAGP_					0	0	0		nc|ENSG00000112425|O95278-4|EPM2A	nc|ENSG00000112425|O95278-4|EPM2A	nc|ENSG00000112425|O95278-4|EPM2A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	439.751393	877.488233	-0.21413	-9.4165E-05	0.21299	9.3662E-05	-0.0011431	-5.027E-07	439.7513169597865	14.442	0.91888	14.376	13.977	14.896	-0.066068	0.035677	7.767E-05	NaN	42.095	75	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462130			39110	12657	22793	22794							0.04458873397231855
RPRALLRLPRA	11	Unmodified	_RPRALLRLPRA_					0	0	0			REV__ENST00000476941.5_1_3:142442973-142443402:+|nuORF	REV__ENST00000476941.5_1_3:142442973-142443402:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.2894287109375	3	440.289595	1317.84696	-0.2009	-8.8455E-05	-0.078275	-3.4464E-05	-0.27918	-0.00012292	440.2895430593989	27.567	0.77375	27.556	27.318	28.092	-0.01156					66	26	3	0	0	0	0.42863	1	4687	4687		7.4771	0	1	395850	+		39111	21430	22794	22795	47314	47314					0.20074641973110374
RPRAPIIAV	9	Unmodified	_RPRAPIIAV_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.8218994140625	2	496.821818	991.629084	0.50342	0.00025011	-0.31333	-0.00015567	0.19009	9.4439E-05	496.82163823806036	36.133	0.98472	36.133	35.83	36.815	0					79	35	3	0	0	0	0.013258	1	7346	7346		74.423	30.016	1	2120000			39112	862	22795	22796	47315	47315					0.13293452050652377
RPRAPIIAV	9	Unmodified	_RPRAPIIAV_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.8219909667969	2	496.821818	991.629084	0.53615	0.00026637	-0.36305	-0.00018037	0.1731	8.6002E-05	496.82160831481804	36.046	1.0666	36.129	35.797	36.863	0.082355					78	38	3	0	0	0	0.037693	1	7313	7313		57.471	17.023	1	2220200			39113	862	22795	22796	47316	47316					0.13293452050652377
RPRAPIIAV	9	Unmodified	_RPRAPIIAV_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.8219909667969	2	496.821818	991.629084	0.58503	0.00029065	-0.36541	-0.00018155	0.21961	0.00010911	496.82161250968926	35.969	1.0492	36.055	35.79	36.839	0.08625					84	37	4	0	0	0	0.017871	1	7310	7310		67.344	35.227	1	2059000			39114	862	22795	22796	47317	47317					0.13293452050652377
RPRAPLPRY	9	Unmodified	_RPRAPLPRY_					0	0	0			REV__ENST00000396061.5_1_15:59949420-59949495:-|nuORF	REV__ENST00000396061.5_1_15:59949420-59949495:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3355712890625	2	563.335624	1124.6567	0.24105	0.00013579	0.057883	3.2608E-05	0.29894	0.0001684	563.3355504972882	24.885	0.84209	24.885	24.486	25.328	0					63	28	3	0	0	0	0.31417	1	3942	3942		6.7232	0.51738	1	259520	+		39115	20648	22796	22797	47318	47318					0.09935355310881278
RPRAPLPRY	9	Unmodified	_RPRAPLPRY_					0	0	0			REV__ENST00000396061.5_1_15:59949420-59949495:-|nuORF	REV__ENST00000396061.5_1_15:59949420-59949495:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.3359985351562	2	563.335624	1124.6567	-0.10356	-5.8338E-05	0.30873	0.00017392	0.20517	0.00011558	563.3358849334818	24.975	0.77955	24.944	24.599	25.378	-0.031408					59	26	3	0	0	0	0.31417	1	3951	3951		6.7232	0	1	213640	+		39116	20648	22796	22797	47319	47319					0.09935355310881278
RPRAPQPG	8	Unmodified	_RPRAPQPG_					0	0	0			REV__ENST00000517910.1_1_8:103819069-103819480:+|nuORF	REV__ENST00000517910.1_1_8:103819069-103819480:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.751220703125	2	439.751393	877.488233	-0.2151	-9.4592E-05	0.061775	2.7166E-05	-0.15333	-6.7426E-05	439.75133755385326	14.314	0.82616	14.314	13.992	14.819	0					60	28	3	0	0	0	0.27124	1	676	676		34.102	0	1	473030	+		39117	21859	22797	22798	47320	47320					0.04458873397231855
RPRAPQPG	8	Unmodified	_RPRAPQPG_					0	0	0			REV__ENST00000517910.1_1_8:103819069-103819480:+|nuORF	REV__ENST00000517910.1_1_8:103819069-103819480:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.7512512207031	2	439.751393	877.488233	-0.22321	-9.8156E-05	0.13996	6.1549E-05	-0.083245	-3.6607E-05	439.75130842628624	14.435	0.83141	14.33	13.991	14.823	-0.10466					65	28	4	0	0	0	0.41758	1	775	775		16.942	0	1	407870	+		39118	21859	22797	22798	47321	47321					0.04458873397231855
RPRAPQPG	8	Unmodified	_RPRAPQPG_					0	0	0			REV__ENST00000517910.1_1_8:103819069-103819480:+|nuORF	REV__ENST00000517910.1_1_8:103819069-103819480:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.75115966796875	2	439.751393	877.488233	-0.21413	-9.4165E-05	0.21299	9.3662E-05	-0.0011431	-5.027E-07	439.7513169597865	14.442	0.91888	14.376	13.977	14.896	-0.066068					75	32	4	0	0	0	0.16948	2	707	707;758		48.346	0	1	462130	+		39119	21859	22797	22798	47322;47323	47322					0.04458873397231855
RPRAPQSCF	9	Unmodified	_RPRAPQSCF_					0	0	0			REV__ENST00000246533.7_1_19:36641090-36641228:+|nuORF	REV__ENST00000246533.7_1_19:36641090-36641228:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2687377929688	2	531.269093	1060.52363	0.14089	7.4852E-05	0.14864	7.897E-05	0.28954	0.00015382	531.2690381246738	28.025	0.65905	28.025	27.7	28.36	0					38	22	2	0	0	0	0.31417	1	4829	4829		6.7232	2.3939	1	201040	+		39120	19507	22798	22799	47324	47324					-0.00420832137274374
RPRAPQSCF	9	Unmodified	_RPRAPQSCF_					0	0	0			REV__ENST00000246533.7_1_19:36641090-36641228:+|nuORF	REV__ENST00000246533.7_1_19:36641090-36641228:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2692260742188	2	531.269093	1060.52363	0.078552	4.1732E-05	0.087274	4.6366E-05	0.16583	8.8098E-05	531.2690134583017	27.955	0.69543	27.956	27.626	28.322	0.0004673					45	24	2	0	0	0	0.33508	1	4816	4816		3.5965	0	1	205750	+		39121	19507	22798	22799	47325	47325					-0.00420832137274374
RPRARYYVQV	10	Unmodified	_RPRARYYVQV_					0	0	0		ENSG00000105246|ENST00000221847|EBI3	ENSG00000105246|ENST00000221847|EBI3	ENSG00000105246|ENST00000221847|EBI3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.58245849609375	3	436.582556	1306.72584	-0.28757	-0.00012555	0.1143	4.99E-05	-0.17328	-7.5649E-05	436.5825677551395	28.354	0.60435	28.354	28.065	28.67	0					63	20	4	0	0	0	0.33327	2	4922	4922;4972		15.739	8.2616	1	608190			39122	1958	22799	22800	47326;47327	47326					0.08474394539780405
RPRARYYVQV	10	Unmodified	_RPRARYYVQV_					0	0	0		ENSG00000105246|ENST00000221847|EBI3	ENSG00000105246|ENST00000221847|EBI3	ENSG00000105246|ENST00000221847|EBI3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.58233642578125	3	436.582556	1306.72584	-0.13861	-6.0514E-05	-1.2118	-0.00052906	-1.3504	-0.00058958	436.58167808477646	28.413	1.1502	28.409	27.994	29.144	-0.0042572					95	40	4	0	0	0	0.33327	2	4947	4947;4996		15.739	4.6733	1	640670			39123	1958	22799	22800	47328;47329	47328					0.08474394539780405
RPRARYYVQV	10	Unmodified	_RPRARYYVQV_					0	0	0		ENSG00000105246|ENST00000221847|EBI3	ENSG00000105246|ENST00000221847|EBI3	ENSG00000105246|ENST00000221847|EBI3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.5821228027344	3	436.582556	1306.72584	-0.28984	-0.00012654	-0.45582	-0.000199	-0.74566	-0.00032554	436.5825114150004	28.409	0.91799	28.41	28.078	28.996	0.0004673					63	32	3	0	0	0	0.26354	2	4930	4930;4982		24.882	18.258	1	678250			39124	1958	22799	22800	47330;47331	47330					0.08474394539780405
RPRATVMVM	9	2 Oxidation (M)	_RPRATVM(Oxidation (M))VM(Oxidation (M))_		RPRATVM(1)VM(1)		RPRATVM(60)VM(60)	0	0	2		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.7865600585938	2	546.786261	1091.55797	0.34883	0.00019074	-0.43137	-0.00023586	-0.082533	-4.5128E-05	546.7863361018689	17.946	1.2707	17.946	17.568	18.839	0					121	43	4	0	0	0	0.03069	1	1819	1819		60.074	6.2411	1	2955000			39125	7281	22800	22801	47332	47332		810;811			0.01585247959337721
RPRATVMVM	9	2 Oxidation (M)	_RPRATVM(Oxidation (M))VM(Oxidation (M))_		RPRATVM(1)VM(1)		RPRATVM(69)VM(69)	0	0	2		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.7865600585938	2	546.786261	1091.55797	0.36292	0.00019844	-0.53477	-0.0002924	-0.17184	-9.3962E-05	546.7862922758886	18.09	1.5407	17.972	17.603	19.144	-0.11739					161	53	5	0	0	0	0.016723	1	1821	1821		69.105	6.5322	1	2969900			39126	7281	22800	22801	47333	47333		810;811			0.01585247959337721
RPRATVMVMV	10	2 Oxidation (M)	_RPRATVM(Oxidation (M))VM(Oxidation (M))V_		RPRATVM(1)VM(1)V		RPRATVM(57)VM(57)V	0	0	2		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.3208618164062	2	596.320468	1190.62638	0.65579	0.00039106	-0.81535	-0.00048621	-0.15956	-9.5147E-05	596.3204033779921	29.166	1.2675	29.166	28.873	30.141	0					155	45	5	0	0	0	0.058058	3	5228	5144;5188;5228		57.249	30.244	1	7213800			39127	7281	22801	22802	47334;47335;47336	47336		810;811			0.03869492539183739
RPRATVMVMV	10	2 Oxidation (M)	_RPRATVM(Oxidation (M))VM(Oxidation (M))V_		RPRATVM(1)VM(1)V		RPRATVM(81)VM(81)V	0	0	2		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.32080078125	2	596.320468	1190.62638	0.507	0.00030233	-0.66645	-0.00039742	-0.15945	-9.5085E-05	596.3204848230685	29.102	1.592	29.115	28.831	30.423	0.012264					156	55	6	0	0	0	0.011792	1	5169	5169		80.676	34.976	1	7683200			39128	7281	22801	22802	47337	47337		810;811			0.03869492539183739
RPRATVMVMV	10	2 Oxidation (M)	_RPRATVM(Oxidation (M))VM(Oxidation (M))V_		RPRATVM(1)VM(1)V		RPRATVM(72)VM(72)V	0	0	2		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.3208618164062	2	596.320468	1190.62638	0.25944	0.00015471	-0.4242	-0.00025296	-0.16477	-9.8255E-05	596.3206543275656	29.183	1.3868	29.196	28.789	30.176	0.013475					153	48	6	0	0	0	0.020018	2	5172	5172;5213		71.708	26.008	1	6434100			39129	7281	22801	22802	47338;47339	47338		810;811			0.03869492539183739
RPRAVYAVEA	10	Unmodified	_RPRAVYAVEA_					0	0	0		ENST00000491389.1_1_21:48068261-48069756:+|nuORF;nc|ENSG00000160310|P55345-6|PRMT2;ENST00000481861.1_1_21:48063482-48078833:+|nuORF;nc|ENSG00000160310|P55345-7|PRMT2;nc|ENSG00000160310|P55345-2|PRMT2;nc|ENSG00000160310|P55345-4|PRMT2;ENST00000482508.5_1_21:48063482-48080886:+|nuORF;nc|ENSG00000160310|P55345-5|PRMT2;nc|ENSG00000160310|P55345-3|PRMT2;ENSG00000160310|ENST00000355680|PRMT2	ENST00000491389.1_1_21:48068261-48069756:+|nuORF	ENST00000491389.1_1_21:48068261-48069756:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.3165893554688	2	566.317097	1130.61964	0.14414	8.1626E-05	-0.41355	-0.0002342	-0.26941	-0.00015257	566.3164122283654	27.2	0.52229	27.2	27.007	27.53	0					43	17	3	0	0	0	0.27529	1	4585	4585		29.841	14.592	1	475690			39130	5459	22802	22803	47340	47340					0.05955638974478461
RPRAVYAVEA	10	Unmodified	_RPRAVYAVEA_					0	0	0		ENST00000491389.1_1_21:48068261-48069756:+|nuORF;nc|ENSG00000160310|P55345-6|PRMT2;ENST00000481861.1_1_21:48063482-48078833:+|nuORF;nc|ENSG00000160310|P55345-7|PRMT2;nc|ENSG00000160310|P55345-2|PRMT2;nc|ENSG00000160310|P55345-4|PRMT2;ENST00000482508.5_1_21:48063482-48080886:+|nuORF;nc|ENSG00000160310|P55345-5|PRMT2;nc|ENSG00000160310|P55345-3|PRMT2;ENSG00000160310|ENST00000355680|PRMT2	ENST00000491389.1_1_21:48068261-48069756:+|nuORF	ENST00000491389.1_1_21:48068261-48069756:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.3163452148438	2	566.317097	1130.61964	0.20897	0.00011834	-0.78337	-0.00044364	-0.57441	-0.0003253	566.3163043264765	27.22	0.47852	27.199	26.985	27.464	-0.021412					41	16	3	0	0	0	0.18128	1	4589	4589		34.932	12.196	1	476950			39131	5459	22802	22803	47341	47341					0.05955638974478461
RPRAVYAVEA	10	Unmodified	_RPRAVYAVEA_					0	0	0		ENST00000491389.1_1_21:48068261-48069756:+|nuORF;nc|ENSG00000160310|P55345-6|PRMT2;ENST00000481861.1_1_21:48063482-48078833:+|nuORF;nc|ENSG00000160310|P55345-7|PRMT2;nc|ENSG00000160310|P55345-2|PRMT2;nc|ENSG00000160310|P55345-4|PRMT2;ENST00000482508.5_1_21:48063482-48080886:+|nuORF;nc|ENSG00000160310|P55345-5|PRMT2;nc|ENSG00000160310|P55345-3|PRMT2;ENSG00000160310|ENST00000355680|PRMT2	ENST00000491389.1_1_21:48068261-48069756:+|nuORF	ENST00000491389.1_1_21:48068261-48069756:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.3167724609375	2	566.317097	1130.61964	0.147	8.3247E-05	-0.40902	-0.00023164	-0.26203	-0.00014839	566.316534372012	27.254	0.45549	27.242	27.014	27.469	-0.01156					39	15	3	0	0	0	0.26265	1	4594	4594		24.991	6.8446	1	514240			39132	5459	22802	22803	47342	47342					0.05955638974478461
RPRDALPRLL	10	Unmodified	_RPRDALPRLL_					0	0	0		nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.2672729492188	2	603.875114	1205.73567	0.22588	0.0001364	0.15262	9.2163E-05	0.3785	0.00022857	603.875177456101	39.784	0.78832	39.784	39.373	40.161	0					45	28	2	0	0	0	0.27086	1	8401	8401		26.021	7.6476	1	139660			39133	5879	22803	22804	47343	47343					0.1410358254518087
RPRDALPRLL	10	Unmodified	_RPRDALPRLL_					0	0	0		nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.2673950195312	2	603.875114	1205.73567	0.51459	0.00031075	-0.18368	-0.00011092	0.33092	0.00019983	603.8749075206383	39.573	0.52539	39.666	39.442	39.967	0.092674					33	18	2	0	0	0	0.31838	1	8355	8355		7.609	2.3121	1	160820			39134	5879	22803	22804	47344	47344					0.1410358254518087
RPRDALPRLL	10	Unmodified	_RPRDALPRLL_					0	0	0		nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.2672729492188	2	603.875114	1205.73567	0.3377	0.00020393	-0.14497	-8.7541E-05	0.19273	0.00011639	603.8751860496728	39.576	0.55289	39.675	39.424	39.977	0.099403					33	19	2	0	0	0	0.23216	1	8357	8357		41.956	15.687	1	171000			39135	5879	22803	22804	47345	47345					0.1410358254518087
RPRDASTLGL	10	Unmodified	_RPRDASTLGL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3064575195312	2	543.306729	1084.59891	0.61258	0.00033282	-0.67241	-0.00036532	-0.059825	-3.2503E-05	543.3063450846797	29.851	0.53238	29.851	29.58	30.113	0					36	18	3	0	0	0	0.23397	1	5387	5387		28.495	9.1326	1	238730			39136	2674	22804	22805	47346	47346					0.059990485947992056
RPRDASTLGL	10	Unmodified	_RPRDASTLGL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3065185546875	2	543.306729	1084.59891	0.6065	0.00032952	-0.86171	-0.00046817	-0.25521	-0.00013866	543.3062560386085	29.833	0.49835	29.845	29.589	30.088	0.012266					36	16	3	0	0	0	0.20497	1	5369	5369		32.037	11.623	1	222550			39137	2674	22804	22805	47347	47347					0.059990485947992056
RPRDASTLGL	10	Unmodified	_RPRDASTLGL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3068237304688	2	543.306729	1084.59891	0.32729	0.00017782	-0.43206	-0.00023474	-0.10477	-5.6924E-05	543.3065016280899	29.799	0.49656	29.812	29.623	30.12	0.013474					38	16	3	0	0	0	0.33104	1	5377	5377		16.149	3.9084	1	261860			39138	2674	22804	22805	47348	47348					0.059990485947992056
RPRDDSDSTL	10	Unmodified	_RPRDDSDSTL_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.8115234375	2	581.278366	1160.54218	-0.0051618	-3.0004E-06	0.45046	0.00026185	0.4453	0.00025884	581.2786028041218	15.16	0.37002	15.16	15.012	15.382	0					22	12	2	0	0	0	0.32146	1	943	943		1.1933	0.50296	1	49094			39139	3229	22805	22806	47349	47349					-0.03167043752364407
RPRDDSDSTL	10	Unmodified	_RPRDDSDSTL_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	581.278366	1160.54218	0.016948	9.8513E-06	0.15	8.7189E-05	0.16694	9.704E-05	581.2785811711946	15.307	0.44523	15.242	15.128	15.573	-0.064413	0.027666	-0.00016203	NaN	2.7352	21	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54246			39140	3229	22805	22806							-0.03167043752364407
RPRDKHLA	8	Unmodified	_RPRDKHLA_					0	0	0			REV__nc|ENSG00000164920|Q8N2R0-2|OSR2	REV__nc|ENSG00000164920|Q8N2R0-2|OSR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2288818359375	2	496.79105	991.567546	0.22377	0.00011117	2.3993	0.0011919	2.6231	0.0013031	496.7922327958554	33.842	0.41465	33.909	33.739	34.153	0.066704					26	14	2	0	0	0	0.34131	1	6578	6578		7.9102	0	1	286040	+		39141	17189	22806	22807	47350	47350					0.07142520351362691
RPRDKQMEL	9	Oxidation (M)	_RPRDKQM(Oxidation (M))EL_		RPRDKQM(1)EL		RPRDKQM(87)EL	0	0	1		ENSG00000109854|ENST00000451739|HTATIP2;nc|ENSG00000109854|Q9BUP3-3|HTATIP2	ENSG00000109854|ENST00000451739|HTATIP2	ENSG00000109854|ENST00000451739|HTATIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8114013671875	2	594.811322	1187.60809	0.12779	7.6011E-05	-0.13261	-7.8877E-05	-0.0048182	-2.8659E-06	594.811430383273	13.498	0.7147	13.498	13.309	14.024	0					87	24	5	0	0	0	0.0048951	2	427	427;468		87.258	60.99	1	2743300			39142	2276	22807	22808	47351;47352	47351		281			0.021790738888284977
RPRDKQMEL	9	Oxidation (M)	_RPRDKQM(Oxidation (M))EL_		RPRDKQM(1)EL		RPRDKQM(69)EL	0	0	1		ENSG00000109854|ENST00000451739|HTATIP2;nc|ENSG00000109854|Q9BUP3-3|HTATIP2	ENSG00000109854|ENST00000451739|HTATIP2	ENSG00000109854|ENST00000451739|HTATIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8115234375	2	594.811322	1187.60809	0.10786	6.4155E-05	-0.045226	-2.6901E-05	0.062631	3.7254E-05	594.8114781542737	13.564	0.80561	13.465	13.249	14.054	-0.09929					100	28	5	0	0	0	0.016571	2	485	440;485		69.338	43.07	1	2602500			39143	2276	22807	22808	47353;47354	47354		281			0.021790738888284977
RPRDKQMEL	9	Oxidation (M)	_RPRDKQM(Oxidation (M))EL_		RPRDKQM(1)EL		RPRDKQM(73)EL	0	0	1		ENSG00000109854|ENST00000451739|HTATIP2;nc|ENSG00000109854|Q9BUP3-3|HTATIP2	ENSG00000109854|ENST00000451739|HTATIP2	ENSG00000109854|ENST00000451739|HTATIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8115844726562	2	594.811322	1187.60809	0.029311	1.7434E-05	-0.015363	-9.1378E-06	0.013948	8.2966E-06	594.811507184465	13.569	0.70625	13.502	13.329	14.035	-0.067496					110	24	7	0	0	0	0.014058	2	490	446;490		73.196	48.205	1	2440200			39144	2276	22807	22808	47355;47356	47356		281			0.021790738888284977
RPRDTRRISL	10	Unmodified	_RPRDTRRISL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.92132568359375	3	423.92146	1268.74255	-0.26564	-0.00011261	-0.59344	-0.00025157	-0.85908	-0.00036418	423.92133136278215	18.829	1.3734	18.712	18.325	19.698	-0.11739					132	47	4	0	0	0	0.11762	3	2064	2019;2064;2112		44.207	32.689	1	1462600			39145	1828	22808	22809	47357;47358;47359	47358					0.11892895425762617
RPRDTRRISL	10	Unmodified	_RPRDTRRISL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.9212951660156	3	423.92146	1268.74255	-0.31837	-0.00013496	-0.59032	-0.00025025	-0.90869	-0.00038521	423.9213313250498	18.816	1.2494	18.757	18.483	19.732	-0.058172					126	43	4	0	0	0	0.13395	2	2051	2010;2051		40.714	30.399	1	1669400			39146	1828	22808	22809	47360;47361	47361					0.11892895425762617
RPRDVKLART	10	Unmodified	_RPRDVKLART_					0	0	0		ENSG00000102575|ENST00000648477|ACP5	ENSG00000102575|ENST00000648477|ACP5	ENSG00000102575|ENST00000648477|ACP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3695678710938	2	606.370195	1210.72584	0.061617	3.7362E-05	0.25428	0.00015419	0.3159	0.00019155	606.3701678018867	111.58	0.54704	111.58	111.46	112.01	0					115	69	2	0	0	0	0.41825	1	29064	29064		0.35063	0.35063	1	142490			39147	1772	22809	22810	47362	47362					0.12890394539772387
RPRDVKLART	10	Unmodified	_RPRDVKLART_					0	0	0		ENSG00000102575|ENST00000648477|ACP5	ENSG00000102575|ENST00000648477|ACP5	ENSG00000102575|ENST00000648477|ACP5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3698120117188	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.58	1	115.58	115.08	116.08	0								0	0	0	0.38207	1	29949	29949		0.35063	0.081612	1				39148	1772	22809	22810	47363	47363					0.12890394539772387
RPRDVKLART	10	Unmodified	_RPRDVKLART_					0	0	0		ENSG00000102575|ENST00000648477|ACP5	ENSG00000102575|ENST00000648477|ACP5	ENSG00000102575|ENST00000648477|ACP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3727416992188	2	606.370195	1210.72584	0.27499	0.00016675	0.84523	0.00051252	1.1202	0.00067927	606.3706928188358	113.08	0.5285	113.06	112.93	113.46	-0.017311					79	63	2	0	0	0	0.41825	1	29423	29423		0.35063	0.081612	1	37651			39149	1772	22809	22810	47364	47364					0.12890394539772387
RPREAEVRF	9	Unmodified	_RPREAEVRF_					0	0	0		nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-8|OS9	nc|ENSG00000135506|Q13438-8|OS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3204956054688	2	580.320171	1158.62579	0.090035	5.2249E-05	0.074327	4.3133E-05	0.16436	9.5383E-05	580.3201840237181	22.542	1.0263	22.542	22.252	23.278	0					90	35	4	0	0	0	0.080952	1	3147	3147		64.927	38.659	1	694430			39150	3880	22810	22811	47365	47365					0.05282157205988369
RPREAEVRF	9	Unmodified	_RPREAEVRF_					0	0	0		nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-8|OS9	nc|ENSG00000135506|Q13438-8|OS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3203125	2	580.320171	1158.62579	0.12173	7.064E-05	0.13659	7.9263E-05	0.25831	0.0001499	580.3202396389996	22.62	0.99832	22.533	22.217	23.216	-0.087608					101	35	4	0	0	0	0.013196	1	3211	3211		91.085	58.299	1	671130			39151	3880	22810	22811	47366	47366					0.05282157205988369
RPREAEVRF	9	Unmodified	_RPREAEVRF_					0	0	0		nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-8|OS9	nc|ENSG00000135506|Q13438-8|OS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3015747070312	2	580.320171	1158.62579	0.13567	7.8733E-05	0.10334	5.9969E-05	0.23901	0.0001387	580.3201814693074	22.689	1.1183	22.645	22.266	23.385	-0.044867					109	39	4	0	0	0	0.044909	1	3218	3218		78.06	51.792	1	571920			39152	3880	22810	22811	47367	47367					0.05282157205988369
RPREAEVRFL	10	Unmodified	_RPREAEVRFL_					0	0	0		nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-8|OS9	nc|ENSG00000135506|Q13438-8|OS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.9114685058594	3	424.910561	1271.70985	0.0084878	3.6066E-06	0.35341	0.00015017	0.36189	0.00015377	424.9112902477372	32.766	3.2112	32.766	32.171	35.382	0					358	115	6	0	0	0	0.0042139	6	6230	6214;6230;6271;6317;6360;6411		96.24	63.914	1	41338000			39153	3880	22811	22812	47368;47369;47370;47371;47372;47373	47369					0.08486688302878065
RPREAEVRFL	10	Unmodified	_RPREAEVRFL_					0	0	0		nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-8|OS9	nc|ENSG00000135506|Q13438-8|OS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.862548828125	2	636.862203	1271.70985	0.42272	0.00026922	1.2542	0.00079873	1.6769	0.0010679	636.8629711900139	32.771	1.0847	32.771	32.251	33.336	0					116	38	4	0	0	0	1.8675E-08	4	6292	6240;6292;6346;6408		154.75	103.12	1	1775500			39154	3880	22811	22812	47374;47375;47376;47377	47375					0.08486688302878065
RPREAEVRFL	10	Unmodified	_RPREAEVRFL_					0	0	0		nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-8|OS9	nc|ENSG00000135506|Q13438-8|OS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.9113464355469	3	424.910561	1271.70985	0.01471	6.2503E-06	0.23458	9.9676E-05	0.24929	0.00010593	424.911276990603	32.644	2.6463	32.699	32.097	34.743	0.055309					345	95	6	0	0	0	0.0048709	6	6233	6167;6189;6233;6274;6323;6369		92.409	60.948	1	42493000			39155	3880	22811	22812	47378;47379;47380;47381;47382;47383	47380					0.08486688302878065
RPREAEVRFL	10	Unmodified	_RPREAEVRFL_					0	0	0		nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-8|OS9	nc|ENSG00000135506|Q13438-8|OS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.8626098632812	2	636.862203	1271.70985	0.68559	0.00043663	0.93716	0.00059684	1.6228	0.0010335	636.8628051662993	32.639	1.0729	32.694	32.182	33.255	0.055309					111	38	4	0	0	0	2.2486E-05	3	6259	6211;6259;6308		151.48	91.406	1	2072600			39156	3880	22811	22812	47384;47385;47386	47385					0.08486688302878065
RPREAEVRFL	10	Unmodified	_RPREAEVRFL_					0	0	0		nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-8|OS9	nc|ENSG00000135506|Q13438-8|OS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.91192626953125	3	424.910561	1271.70985	-0.041165	-1.7492E-05	0.40539	0.00017226	0.36423	0.00015476	424.91132014552875	32.708	3.1994	32.762	32.167	35.367	0.054371					372	115	6	0	0	0	0.0042139	6	6201	6191;6201;6248;6296;6339;6389		96.24	66.802	1	38533000			39157	3880	22811	22812	47387;47388;47389;47390;47391;47392	47388					0.08486688302878065
RPREAEVRFL	10	Unmodified	_RPREAEVRFL_					0	0	0		nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-8|OS9	nc|ENSG00000135506|Q13438-8|OS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.8624877929688	2	636.862203	1271.70985	0.60519	0.00038543	1.1485	0.00073142	1.7537	0.0011168	636.8629473240092	32.736	1.1798	32.791	32.223	33.403	0.054375					118	42	4	0	0	0	1.6646E-05	4	6274	6229;6274;6323;6377		166.77	115.14	1	1612100			39158	3880	22811	22812	47393;47394;47395;47396	47394					0.08486688302878065
RPREDRVPH	9	Unmodified	_RPREDRVPH_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;ENST00000492816.6_1_2:216249553-216256565:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3154296875	2	581.31542	1160.61629	-0.052696	-3.0633E-05	0.1896	0.00011022	0.1369	7.9584E-05	581.3149714630921	13.238	0.50661	13.238	12.977	13.484	0					37	17	3	0	0	0	0.2719	1	380	380		13.042	5.7532	1	90601			39159	2642	22812	22813	47397	47397					0.0424038892047065
RPREDRVPH	9	Unmodified	_RPREDRVPH_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;ENST00000492816.6_1_2:216249553-216256565:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.3151245117188	2	581.31542	1160.61629	-0.051717	-3.0064E-05	-0.60341	-0.00035077	-0.65513	-0.00038084	581.3150393660898	13.363	0.46087	13.264	12.98	13.441	-0.099291					28	15	2	0	0	0	0.3208	1	419	419		5.7319	1.4026	1	98269			39160	2642	22812	22813	47398	47398					0.0424038892047065
RPREERML	8	Unmodified	_RPREERML_					0	0	0			REV__ROM1|p.D210Sfs*102|1|0.07|ENSG00000149489|chr11:62614294-62614306|TGATGGGGTCCCT/-|frameshift_variant	REV__ROM1|p.D210Sfs*102|1|0.07|ENSG00000149489|chr11:62614294-62614306|TGATGGGGTCCCT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.28271484375	2	543.795475	1085.5764	0.65008	0.00035351	0.30499	0.00016585	0.95507	0.00051936	543.7958912281393	29.538	0.45015	29.538	29.324	29.774	0					18	15	2	0	0	0	0.344	1	5350	5350		2.5775	0.27475	1	68399	+		39161	23301	22813	22814	47399	47399					0.03703125925540007
RPREGAGRV	9	Unmodified	_RPREGAGRV_					0	0	0		ENST00000272519.9_1_2:121010448-121010505:+|nuORF	ENST00000272519.9_1_2:121010448-121010505:+|nuORF	ENST00000272519.9_1_2:121010448-121010505:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2859191894531	2	499.286131	996.55771	0.023199	1.1583E-05	-0.19923	-9.9475E-05	-0.17604	-8.7892E-05	499.2861869837786	12.629	0.75604	12.629	12.498	13.254	0					65	26	5	0	0	0	0.037019	1	175	175		57.722	13.864	1	1206100			39162	9088	22814	22815	47400	47400					0.05929332345999683
RPREGAGRV	9	Unmodified	_RPREGAGRV_					0	0	0		ENST00000272519.9_1_2:121010448-121010505:+|nuORF	ENST00000272519.9_1_2:121010448-121010505:+|nuORF	ENST00000272519.9_1_2:121010448-121010505:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2860412597656	2	499.286131	996.55771	0.06689	3.3397E-05	-0.16782	-8.3792E-05	-0.10093	-5.0395E-05	499.28621361818193	12.635	0.83578	12.536	12.381	13.217	-0.099291					71	28	4	0	0	0	0.018449	1	179	179		66.457	22.598	1	1278000			39163	9088	22814	22815	47401	47401					0.05929332345999683
RPREGAGRV	9	Unmodified	_RPREGAGRV_					0	0	0		ENST00000272519.9_1_2:121010448-121010505:+|nuORF	ENST00000272519.9_1_2:121010448-121010505:+|nuORF	ENST00000272519.9_1_2:121010448-121010505:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2859802246094	2	499.286131	996.55771	-0.089851	-4.4861E-05	-0.068737	-3.4319E-05	-0.15859	-7.9181E-05	499.28627049653477	12.666	0.67072	12.598	12.463	13.134	-0.067496					64	22	4	0	0	0	0.0073901	1	186	186		83.429	31.16	1	1325500			39164	9088	22814	22815	47402	47402					0.05929332345999683
RPREGSRFLVF	11	Unmodified	_RPREGSRFLVF_					0	0	0		nc|ENSG00000050327|Q12774-2|ARHGEF5;ENSG00000050327|ENST00000056217|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2579650878906	3	455.257961	1362.75205	0.0031247	1.4226E-06	-0.034978	-1.5924E-05	-0.031853	-1.4502E-05	455.2579876976683	42.714	1.0058	42.714	42.383	43.388	0					116	36	4	0	0	0	0.0070376	3	9300	9300;9341;9392		75.941	57.219	1	4837400			39165	662	22815	22816	47403;47404;47405	47403					0.08518663711265617
RPREGSRFLVF	11	Unmodified	_RPREGSRFLVF_					0	0	0		nc|ENSG00000050327|Q12774-2|ARHGEF5;ENSG00000050327|ENST00000056217|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2579650878906	3	455.257961	1362.75205	0.13479	6.1363E-05	-0.17958	-8.1754E-05	-0.04479	-2.0391E-05	455.25790639025	42.369	1.2341	42.454	42.093	43.327	0.085201					138	44	4	0	0	0	0.0016763	2	9199	9199;9246		87.442	54.826	1	5056300			39166	662	22815	22816	47406;47407	47406					0.08518663711265617
RPREGSRFLVF	11	Unmodified	_RPREGSRFLVF_					0	0	0		nc|ENSG00000050327|Q12774-2|ARHGEF5;ENSG00000050327|ENST00000056217|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2579650878906	3	455.257961	1362.75205	0.16086	7.3233E-05	-0.11689	-5.3213E-05	0.043975	2.002E-05	455.2579332260372	42.262	1.3802	42.353	42.037	43.417	0.091362					145	49	4	0	0	0	0.0070376	2	9182	9182;9225		75.941	43.324	1	4981400			39167	662	22815	22816	47408;47409	47408					0.08518663711265617
RPREQDRDVQL	11	Unmodified	_RPREQDRDVQL_					0	0	0		ENST00000536234.1_1_11:63992965-63993695:-|nuORF;nc|ENSG00000149743|Q86TN4-3|TRPT1;ENSG00000149743|ENST00000317459|TRPT1;nc|ENSG00000149743|Q86TN4-4|TRPT1	ENST00000536234.1_1_11:63992965-63993695:-|nuORF	ENST00000536234.1_1_11:63992965-63993695:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7845764160156	3	471.251534	1410.73277	0.40974	0.00019309	-0.70207	-0.00033085	-0.29233	-0.00013776	471.25077727206946	20.592	0.79204	20.482	20.215	21.007	-0.11003					66	28	4	0	0	0	0.33169	1	2555	2555		6.2344	3.7996	1	222310			39168	4890	22816	22817	47410	47410					0.04383662629720675
RPREQDRDVQL	11	Unmodified	_RPREQDRDVQL_					0	0	0		ENST00000536234.1_1_11:63992965-63993695:-|nuORF;nc|ENSG00000149743|Q86TN4-3|TRPT1;ENSG00000149743|ENST00000317459|TRPT1;nc|ENSG00000149743|Q86TN4-4|TRPT1	ENST00000536234.1_1_11:63992965-63993695:-|nuORF	ENST00000536234.1_1_11:63992965-63993695:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.78466796875	3	471.251534	1410.73277	0.53525	0.00025224	-1.2478	-0.00058803	-0.71256	-0.00033579	471.2508225632633	20.442	0.68645	20.389	20.093	20.779	-0.05291					43	24	3	0	0	0	0.33085	1	2512	2512		8.2864	4.1698	1	204360			39169	4890	22816	22817	47411	47411					0.04383662629720675
RPREQDRDVQL	11	Unmodified	_RPREQDRDVQL_					0	0	0		ENST00000536234.1_1_11:63992965-63993695:-|nuORF;nc|ENSG00000149743|Q86TN4-3|TRPT1;ENSG00000149743|ENST00000317459|TRPT1;nc|ENSG00000149743|Q86TN4-4|TRPT1	ENST00000536234.1_1_11:63992965-63993695:-|nuORF	ENST00000536234.1_1_11:63992965-63993695:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	471.251534	1410.73277	0.11486	5.4126E-05	-0.51937	-0.00024475	-0.40451	-0.00019063	471.25106831008594	20.317	0.59237	20.317	20.18	20.772	0	-0.078691	0.0003559	NaN	8.2864	57	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173840			39170	4890	22816	22817							0.04383662629720675
RPREQNGAIYL	11	Unmodified	_RPREQNGAIYL_					0	0	0		nc|ENSG00000153029|Q95460-3|MR1;nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1;ENST00000438435.6_1_1:181006220-181024398:+|nuORF	nc|ENSG00000153029|Q95460-3|MR1	nc|ENSG00000153029|Q95460-3|MR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.9084777832031	3	439.573837	1315.69968	0.13806	6.0689E-05	-0.36954	-0.00016244	-0.23148	-0.00010175	439.57374596573334	32.288	1.3515	32.342	31.994	33.345	0.054371					156	48	4	0	0	0	0.35571	2	6254	6087;6254		17.049	8.6043	1	2477800			39171	5051	22817	22818	47412;47413	47413					0.054460805776670895
RPRETRVIAV	10	Unmodified	_RPRETRVIAV_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.3118896484375	2	598.864746	1195.71494	0.24383	0.00014602	-0.13027	-7.8016E-05	0.11356	6.8008E-05	598.8646987250893	23.083	0.54376	23.083	22.875	23.419	0					38	18	3	0	0	0	0.31642	1	3360	3360		7.1017	2.2047	1	163500			39172	7131	22818	22819	47414	47414					0.12490992165521675
RPRETRVIAV	10	Unmodified	_RPRETRVIAV_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.31201171875	2	598.864746	1195.71494	0.31489	0.00018858	0.0054397	3.2577E-06	0.32033	0.00019183	598.8646595183966	23.164	0.57648	23.076	22.883	23.459	-0.08761					41	20	3	0	0	0	0.31958	1	3376	3376		5.2969	0	1	173640			39173	7131	22818	22819	47415	47415					0.12490992165521675
RPRETRVIAV	10	Unmodified	_RPRETRVIAV_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.864990234375	2	598.864746	1195.71494	0.35034	0.00020981	-0.12108	-7.251E-05	0.22926	0.0001373	598.8646327896753	23.214	0.52271	23.169	22.977	23.5	-0.044867					40	18	3	0	0	0	0.31681	1	3413	3413		18.373	3.1246	1	160740			39174	7131	22818	22819	47416	47416					0.12490992165521675
RPRETRVIAVL	11	Unmodified	_RPRETRVIAVL_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2741394042969	3	437.273611	1308.799	0.28878	0.00012627	0.61749	0.00027001	0.90627	0.00039629	437.2738807864813	33.958	1.7934	33.958	33.646	35.439	0					162	64	5	0	0	0	0.012127	4	6652	6611;6652;6703;6748		65.172	47.6	1	4656400			39175	7131	22819	22820	47417;47418;47419;47420	47418					0.1569552326241137
RPRETRVIAVL	11	Unmodified	_RPRETRVIAVL_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.27410888671875	3	437.273611	1308.799	0.53114	0.00023225	0.33161	0.000145	0.86275	0.00037726	437.2737621125664	33.809	1.3578	33.876	33.566	34.924	0.06636					147	48	5	0	0	0	0.0016763	4	6616	6564;6616;6664;6718		87.442	65.334	1	4094900			39176	7131	22819	22820	47421;47422;47423;47424	47422					0.1569552326241137
RPREVDILC	9	Unmodified	_RPREVDILC_					0	0	0		ENST00000559405.5_1_15:49913321-49913456:+|nuORF	ENST00000559405.5_1_15:49913321-49913456:+|nuORF	ENST00000559405.5_1_15:49913321-49913456:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.2818603515625	2	550.797683	1099.58081	0.29557	0.0001628	-0.39726	-0.00021881	-0.10169	-5.6011E-05	550.797565532783	25.207	0.66124	25.207	24.93	25.591	0					50	22	3	0	0	0	0.29176	1	4003	4003		10.074	2.1638	1	113480			39177	11884	22820	22821	47425	47425					0.035005903484488954
RPRFRATPPPS	11	Unmodified	_RPRFRATPPPS_					0	0	0			REV__ENST00000568316.1_1_16:24551227-24551584:+|nuORF	REV__ENST00000568316.1_1_16:24551227-24551584:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.59130859375	3	427.910672	1280.71019	-0.1263	-5.4047E-05	0.61741	0.0002642	0.49111	0.00021015	428.24502265334587	16.281	0.91635	16.219	15.838	16.754	-0.062534					86	31	4	0	0	0	0.32736	1	1315	1315		6.6235	1.2207	1	561670	+		39178	22390	22821	22822	47426	47426					0.08106108022730041
RPRFSSLSP	9	Unmodified	_RPRFSSLSP_					0	0	0			REV__nc|ENSG00000170909|Q8IYS5-4|OSCAR	REV__nc|ENSG00000170909|Q8IYS5-4|OSCAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.7899780273438	2	523.790715	1045.56688	0.40779	0.0002136	-1.3304	-0.00069687	-0.92264	-0.00048327	523.7898514839517	24.777	2.6044	24.777	23.11	25.714	0					115	89	2	0	0	0	0.23767	1	3513	3513		18.146	1.9972	1	103530	+		39179	23081	22822	22823	47427	47427					0.045916809116761215
RPRFTLQEL	9	Unmodified	_RPRFTLQEL_					0	0	0		nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF;nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1;ENSG00000150977|ENST00000280571|RILPL2	nc|ENSG00000188026|Q5EBL4-3|RILPL1	nc|ENSG00000188026|Q5EBL4-3|RILPL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.7867431640625	2	580.332747	1158.65094	0.54303	0.00031514	0.33948	0.00019701	0.88252	0.00051215	580.33310483897	45.544	0.48087	45.604	45.282	45.763	0.059834					37	16	3	0	0	0	0.2524	1	10213	10213		11.495	1.4208	1	633210			39180	7726	22823	22824	47428	47428					0.07796212008565817
RPRFTLQEL	9	Unmodified	_RPRFTLQEL_					0	0	0		nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF;nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1;ENSG00000150977|ENST00000280571|RILPL2	nc|ENSG00000188026|Q5EBL4-3|RILPL1	nc|ENSG00000188026|Q5EBL4-3|RILPL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.786865234375	2	580.332747	1158.65094	0.43054	0.00024986	0.42661	0.00024757	0.85715	0.00049743	580.3331559139552	45.532	0.50912	45.597	45.302	45.811	0.065048					44	18	3	0	0	0	0.2524	1	10198	10198		11.495	5.2889	1	762940			39181	7726	22823	22824	47429	47429					0.07796212008565817
RPRGFAYVQF	10	Unmodified	_RPRGFAYVQF_					0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000188529|ENST00000492112|SRSF10;ENSG00000154548|ENST00000452027|SRSF12	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.22442626953125	3	414.224368	1239.65128	0.13628	5.6452E-05	-0.28226	-0.00011692	-0.14598	-6.0467E-05	414.2242742781399	48.456	1.3569	48.456	48.131	49.488	0					146	48	5	0	0	0	0.18562	4	11082	11038;11082;11126;11183		23.801	9.7814	1	7111500			39182	7753	22824	22825	47430;47431;47432;47433	47431					0.041036317283897006
RPRGFAYVQF	10	Unmodified	_RPRGFAYVQF_					0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000188529|ENST00000492112|SRSF10;ENSG00000154548|ENST00000452027|SRSF12	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.8331298828125	2	620.832914	1239.65128	0.44562	0.00027666	-0.16217	-0.00010068	0.28345	0.00017598	620.832795058349	48.455	0.9463	48.455	48.131	49.077	0					94	33	4	0	0	0	0.0042359	4	11098	11044;11098;11142;11196		96.111	62.07	1	3929300			39183	7753	22824	22825	47434;47435;47436;47437	47435					0.041036317283897006
RPRGFAYVQF	10	Unmodified	_RPRGFAYVQF_					0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000188529|ENST00000492112|SRSF10;ENSG00000154548|ENST00000452027|SRSF12	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.8331298828125	2	620.832914	1239.65128	0.44984	0.00027928	-0.097806	-6.0721E-05	0.35204	0.00021856	620.83281161571	48.407	0.88623	48.455	48.132	49.019	0.047523					86	32	4	0	0	0	0.0072369	4	11040	11040;11088;11137;11188		85.642	55.005	1	3446900			39184	7753	22824	22825	47438;47439;47440;47441	47438					0.041036317283897006
RPRGFAYVQF	10	Unmodified	_RPRGFAYVQF_					0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000188529|ENST00000492112|SRSF10;ENSG00000154548|ENST00000452027|SRSF12	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.8330078125	2	620.832914	1239.65128	0.39514	0.00024531	0.022044	1.3686E-05	0.41718	0.000259	620.8328541549549	48.367	1.0646	48.41	48.095	49.16	0.043324					106	39	4	0	0	0	0.0029936	4	11055	11008;11055;11104;11155		103.35	71.048	1	3993900			39185	7753	22824	22825	47442;47443;47444;47445	47443					0.041036317283897006
RPRGFGFITF	10	Unmodified	_RPRGFGFITF_					0	0	0		nc|ENSG00000071626|Q96EP5-2|DAZAP1;ENSG00000071626|ENST00000233078|DAZAP1	nc|ENSG00000071626|Q96EP5-2|DAZAP1	nc|ENSG00000071626|Q96EP5-2|DAZAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.3294067382812	2	599.330008	1196.64546	0.85974	0.00051527	-0.53657	-0.00032158	0.32318	0.00019369	599.3297167094904	60.638	0.71646	60.638	60.387	61.103	0					71	25	4	0	0	0	0.024835	2	14807	14807;14859		66.457	43.799	1	4526000			39186	961	22825	22826	47446;47447	47446					0.055005332167411325
RPRGFGFITF	10	Unmodified	_RPRGFGFITF_					0	0	0		nc|ENSG00000071626|Q96EP5-2|DAZAP1;ENSG00000071626|ENST00000233078|DAZAP1	nc|ENSG00000071626|Q96EP5-2|DAZAP1	nc|ENSG00000071626|Q96EP5-2|DAZAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.3301391601562	2	599.330008	1196.64546	0.8442	0.00050595	-0.64841	-0.00038861	0.19578	0.00011734	599.3296084653467	60.584	0.64207	60.681	60.397	61.039	0.096985					70	22	4	0	0	0	0.024835	3	14824	14775;14824;14878		66.457	43.799	1	4572500			39187	961	22825	22826	47448;47449;47450	47449					0.055005332167411325
RPRGFGFITF	10	Unmodified	_RPRGFGFITF_					0	0	0		nc|ENSG00000071626|Q96EP5-2|DAZAP1;ENSG00000071626|ENST00000233078|DAZAP1	nc|ENSG00000071626|Q96EP5-2|DAZAP1	nc|ENSG00000071626|Q96EP5-2|DAZAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.3301391601562	2	599.330008	1196.64546	0.78063	0.00046786	-0.40163	-0.00024071	0.379	0.00022715	599.3298272984069	60.703	1.1461	60.693	60.406	61.552	-0.0094528					86	42	4	0	0	0	0.024835	2	14867	14819;14867		66.457	63.961	1	5545400			39188	961	22825	22826	47451;47452	47452					0.055005332167411325
RPRGGFLA	8	Unmodified	_RPRGGFLA_					0	0	0		ENST00000300976.8_1_19:18780088-18780439:+|nuORF	ENST00000300976.8_1_19:18780088-18780439:+|nuORF	ENST00000300976.8_1_19:18780088-18780439:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.8945617675781	2	437.256311	872.49807	-0.15934	-6.9673E-05	-0.021129	-9.2389E-06	-0.18047	-7.8912E-05	437.2560876472336	19.473	0.66566	19.473	19.211	19.877	0					49	23	3	0	0	0	0.34247	1	2228	2228		8.5933	0	1	99312			39189	9222	22826	22827	47453	47453					0.056720614025948635
RPRGLALVL	9	Unmodified	_RPRGLALVL_					0	0	0		ENST00000472067.1_1_7:142991698-142998016:+|nuORF;nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2	ENST00000472067.1_1_7:142991698-142998016:+|nuORF	ENST00000472067.1_1_7:142991698-142998016:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.8296203613281	2	497.829643	993.644734	0.58522	0.00029134	-0.41153	-0.00020487	0.17369	8.6469E-05	497.82936481835515	45.517	0.98592	45.577	45.223	46.209	0.059834					92	34	4	0	0	0	0.015402	3	10178	10126;10178;10232		71.134	24.213	1	3964900			39190	10889	22827	22828	47454;47455;47456	47455					0.14765738567689368
RPRGLALVL	9	Unmodified	_RPRGLALVL_					0	0	0		ENST00000472067.1_1_7:142991698-142998016:+|nuORF;nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2	ENST00000472067.1_1_7:142991698-142998016:+|nuORF	ENST00000472067.1_1_7:142991698-142998016:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.82952880859375	2	497.829643	993.644734	0.49554	0.00024669	-0.36395	-0.00018119	0.13159	6.5507E-05	497.82941182500144	45.503	0.97918	45.568	45.248	46.227	0.065048					97	35	4	0	0	0	0.044952	3	10137	10137;10180;10230		54.774	7.8527	1	4060800			39191	10889	22827	22828	47457;47458;47459	47457					0.14765738567689368
RPRGLALVL	9	Unmodified	_RPRGLALVL_					0	0	0		ENST00000472067.1_1_7:142991698-142998016:+|nuORF;nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENSG00000106144|ENST00000310447|CASP2	ENST00000472067.1_1_7:142991698-142998016:+|nuORF	ENST00000472067.1_1_7:142991698-142998016:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	497.829643	993.644734	0.70562	0.00035128	-0.5907	-0.00029407	0.11492	5.721E-05	497.8292756805319	45.635	0.82297	45.635	45.315	46.138	0	0.04197	-0.00013794	NaN	71.134	87	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4148800			39192	10889	22827	22828							0.14765738567689368
RPRGLLGREAK	11	Unmodified	_RPRGLLGREAK_					0	0	0		ENST00000371437.4_1_X:119005607-119005844:+|nuORF	ENST00000371437.4_1_X:119005607-119005844:+|nuORF	ENST00000371437.4_1_X:119005607-119005844:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.258056640625	3	418.258072	1251.75239	-0.10552	-4.4134E-05	-0.23475	-9.8187E-05	-0.34027	-0.00014232	418.25789297373507	26.914	0.65086	26.914	26.644	27.294	0					50	22	3	0	0	0	0.33025	1	4503	4503		9.2438	0.79947	1	194770			39193	9817	22828	22829	47460	47460					0.13658083431141677
RPRGLPPLLVV	11	Unmodified	_RPRGLPPLLVV_					0	0	0		nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1	nc|ENSG00000204852|Q2MV58-3|TCTN1	nc|ENSG00000204852|Q2MV58-3|TCTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8983154296875	2	608.898057	1215.78156	0.52577	0.00032014	-0.26981	-0.00016429	0.25596	0.00015585	608.8978767520945	57.202	0.53862	57.202	56.986	57.525	0					47	19	3	0	0	0	0.0071225	2	13791	13791;13845		75.761	56.504	1	661930			39194	8259	22829	22830	47461;47462	47461					0.18230227727394777
RPRGLPPLLVV	11	Unmodified	_RPRGLPPLLVV_					0	0	0		nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1	nc|ENSG00000204852|Q2MV58-3|TCTN1	nc|ENSG00000204852|Q2MV58-3|TCTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8983154296875	2	608.898057	1215.78156	0.40886	0.00024895	-0.25467	-0.00015507	0.15419	9.3886E-05	608.8979362634262	57.124	0.47091	57.203	56.959	57.43	0.078671					41	16	3	0	0	0	0.0024532	1	13771	13771		85.642	66.385	1	769020			39195	8259	22829	22830	47463	47463					0.18230227727394777
RPRGLPPLLVV	11	Unmodified	_RPRGLPPLLVV_					0	0	0		nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1	nc|ENSG00000204852|Q2MV58-3|TCTN1	nc|ENSG00000204852|Q2MV58-3|TCTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.3992309570312	2	608.898057	1215.78156	0.19042	0.00011595	-0.16752	-0.000102	0.022905	1.3947E-05	608.8979057808177	57.187	0.60052	57.168	57.004	57.604	-0.019077					52	21	3	0	0	0	0.0071225	1	13786	13786		75.761	50.362	1	690290			39196	8259	22829	22830	47464	47464					0.18230227727394777
RPRGPRPLP	9	Unmodified	_RPRGPRPLP_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3224487304688	2	523.322517	1044.63048	0.45404	0.00023761	-0.4057	-0.00021231	0.048347	2.5301E-05	523.3222593134881	17.114	0.90975	17.114	16.81	17.719	0					76	31	3	0	0	0	0.088391	2	1553	1502;1553		39.957	14.558	1	326450			39197	2002	22830	22831	47465;47466	47466					0.1099508613940543
RPRGPRPLP	9	Unmodified	_RPRGPRPLP_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3225708007812	2	523.322517	1044.63048	0.23903	0.00012509	-0.095552	-5.0005E-05	0.14348	7.5085E-05	523.3223722111409	17.302	0.98339	17.184	16.8	17.784	-0.11739					85	34	3	0	0	0	0.088391	3	1651	1557;1603;1651		39.957	7.6316	1	270870			39198	2002	22830	22831	47467;47468;47469	47469					0.1099508613940543
RPRGPRPLP	9	Unmodified	_RPRGPRPLP_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3225708007812	2	523.322517	1044.63048	0.4894	0.00025611	-0.21932	-0.00011477	0.27008	0.00014134	523.3223189103567	17.187	1.1148	17.127	16.81	17.925	-0.060429					92	39	3	0	0	0	0.062246	2	1537	1537;1586		48.346	16.04	1	252600			39199	2002	22830	22831	47470;47471	47470					0.1099508613940543
RPRGPTPPA	9	Unmodified	_RPRGPTPPA_					0	0	0		ENST00000524856.1_1_11:65381441-65381804:-|nuORF	ENST00000524856.1_1_11:65381441-65381804:-|nuORF	ENST00000524856.1_1_11:65381441-65381804:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.772216796875	2	474.772326	947.530098	-0.057844	-2.7463E-05	-0.018454	-8.7617E-06	-0.076298	-3.6224E-05	474.7721870496781	16.004	1.4753	16.004	15.072	16.548	0					155	51	4	0	0	0	0.057976	5	1220	1129;1176;1220;1267;1317		49.933	13.806	1	899750			39200	11527	22831	22832	47472;47473;47474;47475;47476	47474					0.05423429085749376
RPRGPTPPA	9	Unmodified	_RPRGPTPPA_					0	0	0		ENST00000524856.1_1_11:65381441-65381804:-|nuORF	ENST00000524856.1_1_11:65381441-65381804:-|nuORF	ENST00000524856.1_1_11:65381441-65381804:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.772216796875	2	474.772326	947.530098	0.040416	1.9189E-05	-0.12116	-5.7523E-05	-0.080744	-3.8335E-05	474.7721640246655	16.165	1.5495	16.05	15.088	16.638	-0.11434					160	53	4	0	0	0	0.057976	4	1261	1173;1212;1261;1304		49.933	13.806	1	880080			39201	11527	22831	22832	47477;47478;47479;47480	47479					0.05423429085749376
RPRGPTPPA	9	Unmodified	_RPRGPTPPA_					0	0	0		ENST00000524856.1_1_11:65381441-65381804:-|nuORF	ENST00000524856.1_1_11:65381441-65381804:-|nuORF	ENST00000524856.1_1_11:65381441-65381804:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.77227783203125	2	474.772326	947.530098	0.083562	3.9673E-05	-0.1262	-5.9916E-05	-0.042637	-2.0243E-05	474.77216437483173	16.062	1.4579	16	15.16	16.617	-0.062533					145	49	4	0	0	0	0.047483	4	1231	1145;1186;1231;1273		53.833	13.883	1	958580			39202	11527	22831	22832	47481;47482;47483;47484	47483					0.05423429085749376
RPRGPYTPWG	10	Unmodified	_RPRGPYTPWG_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8094482421875	2	593.809439	1185.60433	0.2031	0.0001206	-0.086409	-5.1311E-05	0.11669	6.9291E-05	593.8094441118319	14.863	0.78633	14.753	14.56	15.347	-0.10981					57	27	4	0	0	0	0.37454	1	853	853		8.1555	0.54658	1	289940			39203	7141	22832	22833	47485	47485					0.018947721772747173
RPRGPYTPWG	10	Unmodified	_RPRGPYTPWG_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8092651367188	2	593.809439	1185.60433	0.092779	5.5093E-05	0.014861	8.8249E-06	0.10764	6.3918E-05	593.8094069684431	14.903	0.53851	14.838	14.589	15.128	-0.064413					48	18	4	0	0	0	0.35637	1	867	867		11.495	0.6952	1	291070			39204	7141	22832	22833	47486	47486					0.018947721772747173
RPRGRALGPV	10	Unmodified	_RPRGRALGPV_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.L2219*|1|0.23|ENSG00000053747|chr18:23905559-23905559|C/-|frameshift_variant;LAMA3|p.V417Cfs*5|1|0.19|ENSG00000053747|chr18:23773562-23773563|-/T|frameshift_variant	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8331909179688	2	539.833249	1077.65194	0.31725	0.00017126	-0.0059642	-3.2197E-06	0.31129	0.00016804	539.8333510598595	18.524	0.57013	18.524	18.269	18.839	0					33	19	2	0	0	0	0.38773	1	1953	1953		5.7319	0	1	68254			39205	679	22833	22834	47487	47487					0.1162247116810704
RPRGRLVQSL	10	Unmodified	_RPRGRLVQSL_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.3649291992188	2	591.364913	1180.71527	0.39353	0.00023272	-0.19326	-0.00011429	0.20027	0.00011843	591.3647393215773	24.56	0.69255	24.488	24.179	24.872	-0.072559					51	23	3	0	0	0	0.31838	1	3784	3784		7.609	2.3121	1	195000			39206	7131	22834	22835	47488	47488					0.13214411885360278
RPRGRLVQSL	10	Unmodified	_RPRGRLVQSL_					0	0	0		nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA	nc|ENSG00000179583|P33076-2|CIITA	nc|ENSG00000179583|P33076-2|CIITA	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	591.364913	1180.71527	0.19894	0.00011764	0.15152	8.9601E-05	0.35045	0.00020724	591.3648886592592	24.538	0.60285	24.501	24.224	24.827	-0.037083	0.076526	0.00026645	NaN	14.405	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228070			39207	7131	22834	22835							0.13214411885360278
RPRHAVSRL	9	Unmodified	_RPRHAVSRL_					0	0	0		ENST00000268220.11_1_15:85234789-85259418:-|nuORF	ENST00000268220.11_1_15:85234789-85259418:-|nuORF	ENST00000268220.11_1_15:85234789-85259418:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.3309326171875	2	546.330873	1090.64719	0.15077	8.2369E-05	-0.13641	-7.4525E-05	0.014358	7.8442E-06	546.330779087256	14.78	0.38926	14.78	14.591	14.981	0					37	13	4	0	0	0	0.25112	1	827	827		16.149	0	1	326530			39208	9066	22835	22836	47489	47489					0.10549587025366236
RPRHLPTRSL	10	Unmodified	_RPRHLPTRSL_					0	0	0		ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.5290832519531	3	411.582667	1231.72617	-0.238	-9.7955E-05	-0.002861	-1.1776E-06	-0.24086	-9.9132E-05	411.58264186173705	18.801	0.92295	18.801	18.479	19.401	0					71	32	3	0	0	0	0.31929	1	2029	2029		7.0371	0	1	112370			39209	382	22836	22837	47490	47490					0.1195781425963105
RPRHLQKT	8	Unmodified	_RPRHLQKT_					0	0	0			REV__ENSG00000141384|ENST00000269142|TAF4B	REV__ENSG00000141384|ENST00000269142|TAF4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.31201171875	2	518.312149	1034.60975	-0.14233	-7.3773E-05	-0.059886	-3.104E-05	-0.20222	-0.00010481	518.3121433283688	12.515	0.56641	12.447	12.196	12.762	-0.06806					48	18	5	0	0	0	0.42894	1	167	167		13.042	4.4492	1	440650	+		39210	16072	22837	22838	47491	47491					0.09382495759746234
RPRHPHHHQTF	11	Unmodified	_RPRHPHHHQTF_					0	0	0		ENSG00000135426|ENST00000449076|TESPA1;nc|ENSG00000135426|A2RU30-2|TESPA1;nc|ENSG00000135426|A2RU30-3|TESPA1	ENSG00000135426|ENST00000449076|TESPA1	ENSG00000135426|ENST00000449076|TESPA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7591247558594	3	483.91682	1448.72863	-0.11563	-5.5954E-05	-0.062136	-3.0069E-05	-0.17776	-8.6023E-05	483.91677752074645	13.323	0.28474	13.323	13.282	13.567	0					12	9	2	0	0	0	0.33287	1	403	403		2.8433	2.3373	1	27344			39211	3874	22838	22839	47492	47492					0.022216627173065717
RPRHQGVMV	9	Oxidation (M)	_RPRHQGVM(Oxidation (M))V_		RPRHQGVM(1)V		RPRHQGVM(78)V	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.296142578125	2	548.295642	1094.57673	0.10339	5.6688E-05	-0.21748	-0.00011924	-0.11409	-6.2553E-05	548.2965790107548	14.069	1.17	14.069	13.902	15.072	0					138	40	6	0	0	0	0.01083	2	596	596;640		78.149	45.844	1	27495000			39212	1050;2147	22839	22840	47493;47494	47493		128			0.03322545645391983
RPRHQGVMV	9	Oxidation (M)	_RPRHQGVM(Oxidation (M))V_		RPRHQGVM(1)V		RPRHQGVM(82)V	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2969360351562	2	548.295642	1094.57673	0.17644	9.6741E-05	-0.22704	-0.00012448	-0.050599	-2.7743E-05	548.2966089455184	14.165	1.8849	14.06	13.873	15.758	-0.10466					177	65	6	0	0	0	0.0085732	3	662	623;662;705		81.613	47.511	1	28560000			39213	1050;2147	22839	22840	47495;47496;47497	47496		128			0.03322545645391983
RPRHQGVMV	9	Oxidation (M)	_RPRHQGVM(Oxidation (M))V_		RPRHQGVM(1)V		RPRHQGVM(82)V	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.2969360351562	2	548.295642	1094.57673	0.14921	8.1809E-05	-0.2917	-0.00015994	-0.14249	-7.8127E-05	548.2965712874856	14.12	1.9733	14.053	13.889	15.862	-0.066068					179	68	6	0	0	0	0.0085732	4	663	611;655;663;705		81.613	47.511	1	24700000			39214	1050;2147	22839	22840	47498;47499;47500;47501	47500		128			0.03322545645391983
RPRHQGVMVGM	11	2 Oxidation (M)	_RPRHQGVM(Oxidation (M))VGM(Oxidation (M))_		RPRHQGVM(1)VGM(1)		RPRHQGVM(48)VGM(48)	0	0	2		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.88507080078125	3	433.885141	1298.63359	-0.33391	-0.00014488	0.047119	2.0444E-05	-0.28679	-0.00012444	433.88570203470243	14.307	1.6818	14.202	13.991	15.673	-0.10466					133	58	3	0	0	0	0.067879	1	665	665		48.073	35.845	1	5100500			39215	1050;2147	22840	22841	47502	47502		128;129			-0.003777748604079534
RPRHQKSMS	9	Unmodified	_RPRHQKSMS_					0	0	0		nc|ENSG00000116141|Q9P0L2-2|MARK1;nc|ENSG00000116141|Q9P0L2-3|MARK1;ENSG00000116141|ENST00000366917|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7963256835938	2	563.798549	1125.58254	-0.088751	-5.0038E-05	-0.39109	-0.0002205	-0.47984	-0.00027053	563.7995373405342	13.947	0.59951	13.881	13.774	14.373	-0.066068					26	20	2	0	0	0	0.34681	1	609	609		1.8442	0.19162	1	48206			39216	2706	22841	22842	47503	47503					0.02477644157056602
RPRHQKSMS	9	Unmodified	_RPRHQKSMS_					0	0	0		nc|ENSG00000116141|Q9P0L2-2|MARK1;nc|ENSG00000116141|Q9P0L2-3|MARK1;ENSG00000116141|ENST00000366917|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.798549	1125.58254	-0.049941	-2.8157E-05	-4.053	-0.0022851	-4.1029	-0.0023132	563.7963846371659	13.857	0.2219	13.857	13.74	13.962	0	-0.011453	-0.00023615	NaN	1.8442	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45762			39217	2706	22841	22842							0.02477644157056602
RPRHQKSMS	9	Unmodified	_RPRHQKSMS_					0	0	0		nc|ENSG00000116141|Q9P0L2-2|MARK1;nc|ENSG00000116141|Q9P0L2-3|MARK1;ENSG00000116141|ENST00000366917|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	nc|ENSG00000116141|Q9P0L2-2|MARK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	563.798549	1125.58254	0.001172	6.6076E-07	-3.7683	-0.0021246	-3.7671	-0.0021239	563.7960000969427	13.973	0.30668	13.869	13.685	13.991	-0.10466	-0.00022381	8.4851E-05	NaN	1.8442	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33207			39218	2706	22841	22842							0.02477644157056602
RPRHSRLQREP	11	Unmodified	_RPRHSRLQREP_					0	0	0		ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	ENSG00000140564|ENST00000268171|FURIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.9397888183594	3	477.939514	1430.79671	0.45485	0.00021739	0.50484	0.00024128	0.95969	0.00045867	477.93978281275537	21.231	0.75398	21.121	20.894	21.648	-0.11003					63	26	3	0	0	0	0.45629	1	2823	2823		3.8459	0.49018	1	458000			39219	4320	22842	22843	47504	47504					0.09854487577308646
RPRHSVASL	9	Unmodified	_RPRHSVASL_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.7960205078125	2	511.796332	1021.57811	0.099732	5.1042E-05	0.047676	2.4401E-05	0.14741	7.5443E-05	511.79632936157725	15.691	0.61818	15.691	15.445	16.063	0					46	21	4	0	0	0	0.18208	1	1091	1091		26.268	12.362	1	320180			39220	1003	22843	22844	47505	47505					0.06818503005797538
RPRHSVASL	9	Unmodified	_RPRHSVASL_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.79620361328125	2	511.796332	1021.57811	0.053588	2.7426E-05	0.57299	0.00029326	0.62658	0.00032068	511.7967061056483	15.838	0.73307	15.728	15.491	16.224	-0.10981					38	24	2	0	0	0	0.13748	1	1130	1130		32.786	11.249	1	306070			39221	1003	22843	22844	47506	47506					0.06818503005797538
RPRHSVASL	9	Unmodified	_RPRHSVASL_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.7958068847656	2	511.796332	1021.57811	0.030539	1.563E-05	0.85681	0.00043851	0.88735	0.00045414	511.79675472578197	15.774	0.51583	15.709	15.457	15.973	-0.064413					37	17	3	0	0	0	0.22215	1	1096	1096		20.415	6.5085	1	333890			39222	1003	22843	22844	47507	47507					0.06818503005797538
RPRIAEVA	8	Unmodified	_RPRIAEVA_					0	0	0			REV__nc|ENSG00000182923|Q96MT8-2|CEP63	REV__nc|ENSG00000182923|Q96MT8-2|CEP63	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2745666503906	2	456.274701	910.534849	0.37166	0.00016958	-1.2307	-0.00056152	-0.859	-0.00039194	456.2743197125574	21.184	1.6588	21.074	20.753	22.412	-0.11003					162	59	5	0	0	0	0.44389	1	3036	3036		7.9102	0	1	10036000	+		39223	18226	22844	22845	47508	47508					0.07600313228499544
RPRIALTQSF	10	Unmodified	_RPRIALTQSF_					0	0	0		nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000481883.1_1_21:47977249-47978399:+|nuORF;ENST00000472364.1_1_21:47974114-47978399:+|nuORF;ENSG00000151240|ENST00000280886|DIP2C	nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8463134765625	2	594.846022	1187.67749	0.41527	0.00024702	-0.08058	-4.7933E-05	0.33469	0.00019909	594.8459806152515	41.647	0.73124	41.647	41.382	42.113	0					45	30	2	0	0	0	0.048379	2	8965	8965;9009		59.368	33.1	1	2990700			39224	4948;5458	22845	22846	47509;47510	47509					0.09115900899860208
RPRIALTQSF	10	Unmodified	_RPRIALTQSF_					0	0	0		nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000481883.1_1_21:47977249-47978399:+|nuORF;ENST00000472364.1_1_21:47974114-47978399:+|nuORF;ENSG00000151240|ENST00000280886|DIP2C	nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8460693359375	2	594.846022	1187.67749	0.36066	0.00021454	0.1055	6.2755E-05	0.46616	0.00027729	594.8460287443658	41.396	0.51009	41.486	41.215	41.725	0.090252					51	20	4	0	0	0	0.020018	2	8886	8886;8934		71.708	44.079	1	2575700			39225	4948;5458	22845	22846	47511;47512	47511					0.09115900899860208
RPRIALTQSF	10	Unmodified	_RPRIALTQSF_					0	0	0		nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000481883.1_1_21:47977249-47978399:+|nuORF;ENST00000472364.1_1_21:47974114-47978399:+|nuORF;ENSG00000151240|ENST00000280886|DIP2C	nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.84619140625	2	594.846022	1187.67749	0.47787	0.00028426	-0.14382	-8.5553E-05	0.33405	0.00019871	594.8457341616265	41.438	0.55194	41.535	41.148	41.7	0.096622					48	21	4	0	0	0	0.020018	3	8903	8856;8903;8957		71.708	44.079	1	2026000			39226	4948;5458	22845	22846	47513;47514;47515	47514					0.09115900899860208
RPRIVHVGL	9	Unmodified	_RPRIVHVGL_					0	0	0		ENSG00000100024|ENST00000326010|UPB1	ENSG00000100024|ENST00000326010|UPB1	ENSG00000100024|ENST00000326010|UPB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.8328857421875	2	523.832717	1045.65088	0.38359	0.00020094	-0.14196	-7.4361E-05	0.24163	0.00012658	523.8325918269804	31.014	0.74922	31.014	30.727	31.476	0					63	26	3	0	0	0	0.010938	1	5725	5725		77.984	56.238	1	580920			39227	1517	22846	22847	47516	47516					0.1298825679921265
RPRIVHVGL	9	Unmodified	_RPRIVHVGL_					0	0	0		ENSG00000100024|ENST00000326010|UPB1	ENSG00000100024|ENST00000326010|UPB1	ENSG00000100024|ENST00000326010|UPB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.8328247070312	2	523.832717	1045.65088	0.25617	0.00013419	-0.12752	-6.68E-05	0.12865	6.739E-05	523.8326223281789	31.011	0.72376	31.039	30.749	31.473	0.027946					58	25	3	0	0	0	0.010938	1	5745	5745		77.984	51.643	1	667840			39228	1517	22846	22847	47517	47517					0.1298825679921265
RPRIVHVGL	9	Unmodified	_RPRIVHVGL_					0	0	0		ENSG00000100024|ENST00000326010|UPB1	ENSG00000100024|ENST00000326010|UPB1	ENSG00000100024|ENST00000326010|UPB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	523.832717	1045.65088	0.36921	0.0001934	-0.11606	-6.0795E-05	0.25315	0.00013261	523.8325990019972	30.964	0.64695	30.991	30.758	31.405	0.027157	-0.023823	1.5154E-05	NaN	77.984	56	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	771350			39229	1517	22846	22847							0.1298825679921265
RPRKAEPHSF	10	Unmodified	_RPRKAEPHSF_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;TNS2|p.R491Gfs*29|1|0.24|ENSG00000111077|chr12:53059109-53059109|C/-|frameshift_variant;TNS2|p.T701Cfs*52|1|0.31|ENSG00000111077|chr12:53059738-53059747|GCCTACAGCA/-|frameshift_variant;ENST00000552403.5_1_12:53443879-53447323:+|nuORF	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.8330688476562	2	612.833446	1223.65234	-0.050103	-3.0705E-05	0.11568	7.0892E-05	0.065575	4.0187E-05	612.8333699684254	13.85	0.27859	13.85	13.714	13.992	0					14	9	2	0	0	0	0.32148	1	567	567		1.1933	0.59184	1	41815			39230	2347	22847	22848	47518	47518					0.049458460973028195
RPRKAEPHSF	10	Unmodified	_RPRKAEPHSF_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;TNS2|p.R491Gfs*29|1|0.24|ENSG00000111077|chr12:53059109-53059109|C/-|frameshift_variant;TNS2|p.T701Cfs*52|1|0.31|ENSG00000111077|chr12:53059738-53059747|GCCTACAGCA/-|frameshift_variant;ENST00000552403.5_1_12:53443879-53447323:+|nuORF	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	612.833446	1223.65234	-0.098262	-6.0218E-05	0.398	0.00024391	0.29974	0.00018369	612.8337388432255	13.974	0.28488	13.869	13.738	14.023	-0.10466	-0.00060537	0.00021673	NaN	1.1933	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25625			39231	2347	22847	22848							0.049458460973028195
RPRKAEPHSF	10	Unmodified	_RPRKAEPHSF_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;TNS2|p.R491Gfs*29|1|0.24|ENSG00000111077|chr12:53059109-53059109|C/-|frameshift_variant;TNS2|p.T701Cfs*52|1|0.31|ENSG00000111077|chr12:53059738-53059747|GCCTACAGCA/-|frameshift_variant;ENST00000552403.5_1_12:53443879-53447323:+|nuORF	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	612.833446	1223.65234	-0.10394	-6.3696E-05	0.22231	0.00013624	0.11837	7.2544E-05	612.8336590333504	13.957	0.23297	13.891	13.774	14.007	-0.066068	0.020944	1.3949E-06	NaN	1.1933	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34672			39232	2347	22847	22848							0.049458460973028195
RPRKAFLL	8	Unmodified	_RPRKAFLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8243713378906	2	500.824361	999.634169	0.071195	3.5656E-05	-0.50207	-0.00025145	-0.43087	-0.00021579	500.82411038235887	27.709	2.2004	27.709	27.38	29.58	0					185	77	5	0	0	0	0.029359	6	4700	4700;4740;4784;4826;4870;4921		89.427	25.864	1	5210700			39233	5188	22848	22849	47519;47520;47521;47522;47523;47524	47519					0.1343375591327458
RPRKAFLL	8	Unmodified	_RPRKAFLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8243103027344	2	500.824361	999.634169	0.036743	1.8402E-05	-0.46705	-0.00023391	-0.4303	-0.00021551	500.8241219935975	27.719	2.3636	27.698	27.349	29.712	-0.021412					203	82	4	0	0	0	0.042326	6	4844	4708;4749;4800;4844;4886;4930		81.864	25.323	1	5387600			39234	5188	22848	22849	47525;47526;47527;47528;47529;47530	47528					0.1343375591327458
RPRKAFLL	8	Unmodified	_RPRKAFLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.82421875	2	500.824361	999.634169	-0.043689	-2.188E-05	-0.32192	-0.00016123	-0.36561	-0.00018311	500.824203244143	27.738	2.2853	27.726	27.374	29.659	-0.011562					209	80	5	0	0	0	0.065797	6	4707	4707;4749;4792;4838;4889;4938		70.716	23.795	1	5295400			39235	5188	22848	22849	47531;47532;47533;47534;47535;47536	47531					0.1343375591327458
RPRKAFLLL	9	Unmodified	_RPRKAFLLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3663940429688	2	557.366393	1112.71823	0.16642	9.2759E-05	-0.013197	-7.3558E-06	0.15323	8.5403E-05	557.3662879517832	40.947	0.80735	40.947	40.634	41.441	0					72	29	3	0	0	0	0.079752	2	8785	8785;8836		41.84	14.956	1	788700			39236	5188	22849	22850	47537;47538	47537					0.16638287010187014
RPRKAFLLL	9	Unmodified	_RPRKAFLLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.366455078125	2	557.366393	1112.71823	0.43527	0.0002426	-0.15359	-8.5607E-05	0.28168	0.000157	557.3661562522551	40.742	0.87395	40.834	40.531	41.405	0.09267					80	32	4	0	0	0	0.019245	2	8748	8700;8748		65.235	35.01	1	866730			39237	5188	22849	22850	47539;47540	47540					0.16638287010187014
RPRKAFLLL	9	Unmodified	_RPRKAFLLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.366455078125	2	557.366393	1112.71823	0.16284	9.0761E-05	0.074481	4.1513E-05	0.23732	0.00013227	557.3663281020075	40.674	0.7847	40.773	40.505	41.29	0.099407					64	28	3	0	0	0	0.07432	2	8681	8681;8729		43.858	13.633	1	1073500			39238	5188	22849	22850	47541;47542	47541					0.16638287010187014
RPRKAFLLLL	10	Unmodified	_RPRKAFLLLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.9086303710938	2	613.908425	1225.8023	0.27629	0.00016962	0.006228	3.8234E-06	0.28252	0.00017344	613.9083687701622	52.39	1.4189	52.39	52.074	53.493	0					143	51	4	0	0	0	0.0017481	5	12396	12255;12298;12343;12396;12445		131.27	131.27	1	8186400			39239	5188	22850	22851	47543;47544;47545;47546;47547	47546					0.19842818107099447
RPRKAFLLLL	10	Unmodified	_RPRKAFLLLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.6083984375	3	409.608042	1225.8023	-0.012423	-5.0885E-06	-0.26271	-0.00010761	-0.27513	-0.0001127	409.60841977764244	52.372	3.9108	52.372	51.997	55.907	0					445	143	6	0	0	0	0.24437	5	12281	12281;12323;12374;12417;12468		27.223	10.949	1	99351000			39240	5188	22850	22851	47548;47549;47550;47551;47552	47548					0.19842818107099447
RPRKAFLLLL	10	Unmodified	_RPRKAFLLLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.6086120605469	3	409.608042	1225.8023	0.16529	6.7705E-05	-0.38233	-0.00015661	-0.21704	-8.89E-05	409.6083823483185	52.347	3.1865	52.397	52.009	55.196	0.050575					383	118	5	0	0	0	0.24437	9	12308	12213;12260;12308;12349;12393;12445;12538;12589;12982		27.223	20.581	1	96925000			39241	5188	22850	22851	47553;47554;47555;47556;47557;47558;47559;47560;47561	47555					0.19842818107099447
RPRKAFLLLL	10	Unmodified	_RPRKAFLLLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	613.90869140625	2	613.908425	1225.8023	0.30135	0.000185	-0.039123	-2.4018E-05	0.26222	0.00016098	613.9083762333422	52.316	1.4679	52.366	52.086	53.554	0.050575					130	53	3	0	0	0	0.0050981	4	12335	12237;12284;12335;12387		118.89	118.89	1	8117100			39242	5188	22850	22851	47562;47563;47564;47565	47564					0.19842818107099447
RPRKAFLLLL	10	Unmodified	_RPRKAFLLLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.60809326171875	3	409.608042	1225.8023	0.43349	0.00017756	-0.62885	-0.00025758	-0.19537	-8.0024E-05	409.60777519612185	55.976	1.1855	56.046	55.216	56.402	0.070885					75	43	2	0	0	0	0.38745	1	13413	13413		5.7834	5.7834	1	558250			39243	5188	22850	22851	47566	47566					0.19842818107099447
RPRKAFLLLL	10	Unmodified	_RPRKAFLLLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.60784912109375	3	409.608042	1225.8023	0.26798	0.00010977	-0.476	-0.00019498	-0.20802	-8.5207E-05	409.60781548433675	56.346	1.2095	56.425	56.221	57.43	0.078671					74	44	2	0	0	0	0.38745	1	13765	13765		5.7834	5.7834	1	438100			39244	5188	22850	22851	47567	47567					0.19842818107099447
RPRKAFLLLL	10	Unmodified	_RPRKAFLLLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.56060791015625	3	409.608042	1225.8023	-0.54478	-0.00022315	-0.50307	-0.00020606	-1.0478	-0.00042921	409.60778119765746	59.974	0.51377	60.069	59.881	60.395	0.095089					22	18	2	0	0	0	0.31969	1	14708	14708		3.3196	0	1	223790			39245	5188	22850	22851	47568	47568					0.19842818107099447
RPRKAFLLLL	10	Unmodified	_RPRKAFLLLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5606994628906	3	409.608042	1225.8023	0.44243	0.00018122	-0.97657	-0.00040001	-0.53414	-0.00021879	409.60764377462135	60.58	0.42116	60.677	60.528	60.949	0.096985					21	14	2	0	0	0	0.31969	1	14806	14806		5.7834	5.7834	1	287330			39246	5188	22850	22851	47569	47569					0.19842818107099447
RPRKAFLLLL	10	Unmodified	_RPRKAFLLLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	613.90869140625	2	613.908425	1225.8023	0.16143	9.9104E-05	0.13819	8.4838E-05	0.29962	0.00018394	613.9084685212921	52.54	1.6022	52.539	52.246	53.848	-0.00080872					138	59	3	0	0	0	0.0046086	5	12302	12302;12352;12403;12450;12493		111.29	111.29	1	7667200			39247	5188	22850	22851	47570;47571;47572;47573;47574	47570					0.19842818107099447
RPRKAFLLLL	10	Unmodified	_RPRKAFLLLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.60833740234375	3	409.608042	1225.8023	0.011884	4.8677E-06	-0.24228	-9.924E-05	-0.2304	-9.4373E-05	409.60840964174287	52.584	3.3326	52.583	52.194	55.526	-0.00080872					397	122	6	0	0	0	0.20497	4	12460	12324;12460;12512;12561		32.037	11.166	1	92153000			39248	5188	22850	22851	47575;47576;47577;47578	47576					0.19842818107099447
RPRKAFLLLL	10	Unmodified	_RPRKAFLLLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	409.608042	1225.8023	0.26798	0.00010977	-0.476	-0.00019498	-0.20802	-8.5207E-05	409.60781548433675	56.346	1.2095	56.425	56.221	57.43	0.078671	-0.12662	0.00022723	NaN	5.7834	74	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438100			39249	5188	22850	22851							0.19842818107099447
RPRKAFLLLL	10	Unmodified	_RPRKAFLLLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	409.608042	1225.8023	0.76034	0.00031144	-1.064	-0.00043584	-0.3037	-0.0001244	409.6076577495113	56.697	0.51213	56.678	56.297	56.809	-0.019077	0.12662	-0.00049536	NaN	5.7834	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323840			39250	5188	22850	22851							0.19842818107099447
RPRKDLVETL	10	Unmodified	_RPRKDLVETL_					0	0	0		ENSG00000010072|ENST00000295050|SPRTN;nc|ENSG00000010072|Q9H040-2|SPRTN	ENSG00000010072|ENST00000295050|SPRTN	ENSG00000010072|ENST00000295050|SPRTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5785827636719	3	409.5787	1225.71427	-0.29966	-0.00012274	-1.0657	-0.00043648	-1.3653	-0.00055921	409.5784572401771	27.597	0.60148	27.597	27.38	27.981	0					44	20	3	0	0	0	0.28078	1	4704	4704		22.775	7.9371	1	187560			39251	414	22851	22852	47579	47579					0.11044152725798995
RPRKDLVETL	10	Unmodified	_RPRKDLVETL_					0	0	0		ENSG00000010072|ENST00000295050|SPRTN;nc|ENSG00000010072|Q9H040-2|SPRTN	ENSG00000010072|ENST00000295050|SPRTN	ENSG00000010072|ENST00000295050|SPRTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5785217285156	3	409.5787	1225.71427	-0.20578	-8.4284E-05	-1.6405	-0.00067189	-1.8462	-0.00075618	409.578355290243	27.571	0.85347	27.549	27.242	28.095	-0.021412					71	29	3	0	0	0	0.32099	1	4712	4712		17.863	3.0253	1	261270			39252	414	22851	22852	47580	47580					0.11044152725798995
RPRKDQRLL	9	Unmodified	_RPRKDQRLL_					0	0	0			REV__ENSG00000112379|ENST00000251691|ARFGEF3	REV__ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.36474609375	2	591.364913	1180.71527	0.33503	0.00019812	-0.1486	-8.7877E-05	0.18643	0.00011025	591.3646523307222	24.284	0.64413	24.284	24.029	24.673	0					55	21	3	0	0	0	0.32371	1	3739	3739		5.2969	0	1	163890	+		39253	14775	22852	22853	47581	47581					0.13214411885360278
RPRKDSESK	9	Unmodified	_RPRKDSESK_					0	0	0		ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	ENSG00000130382|ENST00000252674|MLLT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2833251953125	2	551.801811	1101.58907	0.31323	0.00017284	1.1827	0.0006526	1.4959	0.00082544	551.8032222157104	19.407	0.37214	19.291	19.116	19.488	-0.11592					29	12	3	0	0	0	0.26068	1	2203	2203		3.2813	0	1	38839			39254	3472	22853	22854	47582	47582					0.042338605894201464
RPRKEPVD	8	Unmodified	_RPRKEPVD_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.27020263671875	2	498.78289	995.551228	0.545	0.00027184	1.6562	0.00082611	2.2012	0.0010979	498.7827493131887	20.916	0.44934	20.863	20.613	21.062	-0.05291					19	15	2	0	0	0	0.3433	1	2700	2700		6.2058	0	1	54586			39255	3521	22854	22855	47583	47583					0.053273943946123836
RPRKTGHALFL	11	Unmodified	_RPRKTGHALFL_					0	0	0		nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1	nc|ENSG00000171617|O14682-2|ENC1	nc|ENSG00000171617|O14682-2|ENC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.59454345703125	3	432.594684	1294.76222	-0.41225	-0.00017834	-0.13336	-5.7689E-05	-0.54561	-0.00023603	432.59466550569726	24.884	1.3075	24.852	24.485	25.793	-0.031408					144	45	4	0	0	0	0.26959	2	3892	3847;3892		24.957	12.729	1	1081900			39256	6564	22855	22856	47584;47585	47585					0.12663271436508694
RPRKTSSL	8	Unmodified	_RPRKTSSL_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7851257324219	2	472.785433	943.556313	-0.24819	-0.00011734	-0.18994	-8.9803E-05	-0.43813	-0.00020714	472.7853433367384	12.541	0.93871	12.541	12.397	13.336	0					64	32	4	0	0	0	0.23736	1	151	151		37.974	15.238	1	1102000			39257	1836	22856	22857	47586	47586					0.08227698257235261
RPRKTSSL	8	Unmodified	_RPRKTSSL_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7852783203125	2	472.785433	943.556313	-0.096376	-4.5565E-05	-0.27278	-0.00012897	-0.36916	-0.00017453	472.78531397927753	12.544	0.95639	12.448	12.295	13.252	-0.096607					64	32	3	0	0	0	0.079438	1	161	161		64.236	24.287	1	1219900			39258	1836	22856	22857	47587	47587					0.08227698257235261
RPRKTSSL	8	Unmodified	_RPRKTSSL_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.78521728515625	2	472.785433	943.556313	-0.20774	-9.8215E-05	-0.16715	-7.9027E-05	-0.37489	-0.00017724	472.78536154896375	12.572	0.93007	12.504	12.345	13.275	-0.06806					68	31	4	0	0	0	0.3474	2	160	160;203		25.399	11.493	1	1141500			39259	1836	22856	22857	47588;47589	47588					0.08227698257235261
RPRKTSSLSLF	11	Unmodified	_RPRKTSSLSLF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.5904541015625	3	431.254216	1290.74082	-0.046037	-1.9853E-05	-0.50525	-0.00021789	-0.55128	-0.00023774	431.25386734205074	32.676	0.60147	32.731	32.441	33.042	0.054371					63	21	4	0	0	0	0.33122	1	6281	6281		7.0371	0	1	560320			39260	1836	22857	22858	47590	47590					0.10707841617136182
RPRKVEALV	9	Unmodified	_RPRKVEALV_					0	0	0		ENST00000609504.5_2_20:328129-329931:+|nuORF;ENST00000382285.6_1_20:328123-329934:+|nuORF;ENST00000609179.5_1_20:327490-329931:+|nuORF	ENST00000609504.5_2_20:328129-329931:+|nuORF	ENST00000609504.5_2_20:328129-329931:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.3377685546875	2	534.337833	1066.66111	0.54431	0.00029084	-0.70671	-0.00037762	-0.1624	-8.6777E-05	534.3373121640512	21.329	0.96961	21.329	21.026	21.996	0					84	34	4	0	0	0	0.064268	2	2846	2800;2846		47.594	16.326	1	440040			39261	10005	22858	22859	47591;47592	47592					0.13044819733772783
RPRKVEALV	9	Unmodified	_RPRKVEALV_					0	0	0		ENST00000609504.5_2_20:328129-329931:+|nuORF;ENST00000382285.6_1_20:328123-329934:+|nuORF;ENST00000609179.5_1_20:327490-329931:+|nuORF	ENST00000609504.5_2_20:328129-329931:+|nuORF	ENST00000609504.5_2_20:328129-329931:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.337646484375	2	534.337833	1066.66111	0.46013	0.00024586	-0.49164	-0.0002627	-0.031515	-1.684E-05	534.3374559999947	21.513	0.78685	21.413	21.13	21.917	-0.10034					77	27	4	0	0	0	0.064268	2	2851	2851;2899		47.594	21.326	1	582780			39262	10005	22858	22859	47593;47594	47593					0.13044819733772783
RPRKVEALV	9	Unmodified	_RPRKVEALV_					0	0	0		ENST00000609504.5_2_20:328129-329931:+|nuORF;ENST00000382285.6_1_20:328123-329934:+|nuORF;ENST00000609179.5_1_20:327490-329931:+|nuORF	ENST00000609504.5_2_20:328129-329931:+|nuORF	ENST00000609504.5_2_20:328129-329931:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.3378295898438	2	534.337833	1066.66111	0.47933	0.00025612	-0.32161	-0.00017185	0.15772	8.4275E-05	534.3374742859438	21.479	0.7837	21.43	21.122	21.905	-0.049377					70	27	4	0	0	0	0.064268	2	2877	2826;2877		47.594	21.326	1	502230			39263	10005	22858	22859	47595;47596	47596					0.13044819733772783
RPRLALNVM	9	Oxidation (M)	_RPRLALNVM(Oxidation (M))_		RPRLALNVM(1)		RPRLALNVM(71)	0	0	1		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3153076171875	2	543.316043	1084.61753	0.61502	0.00033415	-0.56559	-0.0003073	0.049426	2.6854E-05	543.3154958897518	33.606	1.2434	33.606	33.202	34.446	0					119	44	4	0	0	0	0.015402	1	6514	6514		71.134	42.052	1	2418100			39264	654	22859	22860	47597	47597		77			0.07860886964976999
RPRLALNVM	9	Oxidation (M)	_RPRLALNVM(Oxidation (M))_		RPRLALNVM(1)		RPRLALNVM(78)	0	0	1		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3157348632812	2	543.316043	1084.61753	0.82546	0.00044848	-0.53709	-0.00029181	0.28837	0.00015667	543.3154875305288	33.484	1.1625	33.551	33.182	34.344	0.06636					99	41	3	0	0	0	0.01083	3	6486	6441;6486;6530		78.149	51.266	1	2464000			39265	654	22859	22860	47598;47599;47600	47599		77			0.07860886964976999
RPRLALNVM	9	Oxidation (M)	_RPRLALNVM(Oxidation (M))_		RPRLALNVM(1)		RPRLALNVM(59)	0	0	1		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3154907226562	2	543.316043	1084.61753	0.42156	0.00022904	-0.26408	-0.00014348	0.15748	8.556E-05	543.3156782208177	33.479	1.0808	33.546	33.158	34.239	0.066704					88	38	3	0	0	0	0.034444	2	6477	6428;6477		58.679	31.795	1	2717100			39266	654	22859	22860	47601;47602	47602		77			0.07860886964976999
RPRLDPWKL	9	Unmodified	_RPRLDPWKL_					0	0	0		ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.85107421875	2	590.851107	1179.68766	0.4688	0.00027699	0.31356	0.00018527	0.78237	0.00046226	590.8511392124237	41.763	0.45592	41.853	41.787	42.243	0.090248					24	16	2	0	0	0	0.18208	1	9052	9052		26.268	0.86883	1	1012600			39267	3509	22860	22861	47603	47603					0.1050050862511398
RPRLDPWKL	9	Unmodified	_RPRLDPWKL_					0	0	0		ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.852294921875	2	590.851107	1179.68766	0.67341	0.00039789	0.4258	0.00025158	1.0992	0.00064947	590.8513336265487	41.692	0.47938	41.788	41.729	42.208	0.096626					28	17	2	0	0	0	0.18208	1	9013	9013		26.268	0.86883	1	999780			39268	3509	22860	22861	47604	47604					0.1050050862511398
RPRLGLRAL	9	Unmodified	_RPRLGLRAL_					0	0	0		ENST00000315251.10_1_3:53857337-53857781:-|nuORF	ENST00000315251.10_1_3:53857337-53857781:-|nuORF	ENST00000315251.10_1_3:53857337-53857781:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.345703125	2	526.345992	1050.67743	0.20033	0.00010544	-0.49154	-0.00025872	-0.29121	-0.00015328	526.3456559073679	27.485	0.93741	27.463	27.1	28.038	-0.021412					86	32	4	0	0	0	0.062246	1	4701	4701		48.346	6.2513	1	1007500			39269	9352	22861	22862	47605	47605					0.15411945690539142
RPRLGLRAL	9	Unmodified	_RPRLGLRAL_					0	0	0		ENST00000315251.10_1_3:53857337-53857781:-|nuORF	ENST00000315251.10_1_3:53857337-53857781:-|nuORF	ENST00000315251.10_1_3:53857337-53857781:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	526.345992	1050.67743	0.31249	0.00016448	-0.63876	-0.00033621	-0.32627	-0.00017173	526.3456179218281	27.505	0.89005	27.505	27.146	28.036	0	0.023896	-0.0001111	NaN	48.346	77	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	867560			39270	9352	22861	22862							0.15411945690539142
RPRLGLRAL	9	Unmodified	_RPRLGLRAL_					0	0	0		ENST00000315251.10_1_3:53857337-53857781:-|nuORF	ENST00000315251.10_1_3:53857337-53857781:-|nuORF	ENST00000315251.10_1_3:53857337-53857781:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	526.345992	1050.67743	0.22503	0.00011845	-0.48614	-0.00025588	-0.26111	-0.00013743	526.3456602167923	27.486	0.90527	27.474	27.187	28.092	-0.01156	-0.0063968	4.9563E-05	NaN	48.346	73	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	968850			39271	9352	22861	22862							0.15411945690539142
RPRLLYQRT	9	Unmodified	_RPRLLYQRT_					0	0	0			REV__L1M1_dup8526|chr15:66988154-66991154:+|1.855404616008009|0.3427794237982891|2.44|523.0|3|1|sense	REV__L1M1_dup8526|chr15:66988154-66991154:+|1.855404616008009|0.3427794237982891|2.44|523.0|3|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8578491210938	2	601.859464	1201.70437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.169	1	94.169	93.669	94.669	0								0	0	0	0.264	1	25106	25106		1.8442	0	1		+		39272	22779	22862	22863	47606	47606					0.11159009511061413
RPRLNQHNHF	10	Unmodified	_RPRLNQHNHF_					0	0	0		ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.23406982421875	3	440.234038	1317.68028	0.093674	4.1239E-05	-0.27906	-0.00012285	-0.18538	-8.1612E-05	440.23398286332235	17.325	0.85423	17.325	16.981	17.835	0					87	29	4	0	0	0	0.16374	2	1606	1565;1606		37.075	28.63	1	769660			39273	5411	22863	22864	47607;47608	47608					0.034151690774024246
RPRLNQHNHF	10	Unmodified	_RPRLNQHNHF_					0	0	0		ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2340393066406	3	440.234038	1317.68028	-0.1029	-4.5299E-05	-0.047927	-2.1099E-05	-0.15082	-6.6398E-05	440.2340755617642	17.587	1.0218	17.469	17.162	18.184	-0.11739					85	35	4	0	0	0	0.30656	2	1650	1650;1697		19.626	16.566	1	798500			39274	5411	22863	22864	47609;47610	47609					0.034151690774024246
RPRLNQHNHF	10	Unmodified	_RPRLNQHNHF_					0	0	0		ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.23406982421875	3	440.234038	1317.68028	0.10738	4.7271E-05	-0.19606	-8.6312E-05	-0.088682	-3.9041E-05	440.2340422542028	17.487	1.0058	17.427	17.079	18.084	-0.060431					98	35	4	0	0	0	0.29048	2	1664	1614;1664		21.59	13.146	1	640800			39275	5411	22863	22864	47611;47612	47612					0.034151690774024246
RPRLPKPPPR	10	Unmodified	_RPRLPKPPPR_					0	0	0			REV__nc|ENSG00000175920|Q18PE1-3|DOK7	REV__nc|ENSG00000175920|Q18PE1-3|DOK7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5526123046875	3	405.259524	1212.75674	-0.2305	-9.3411E-05	-0.96314	-0.00039032	-1.1936	-0.00048373	405.5932794958215	22.397	0.31752	22.298	22.154	22.472	-0.099457					15	11	2	0	0	0	0.31969	1	3161	3161		5.7834	0	1	32015	+		39276	23097	22864	22865	47613	47613					0.15887592644685355
RPRLQHSFSF	10	Unmodified	_RPRLQHSFSF_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.5636291503906	3	425.563273	1273.66799	-0.24247	-0.00010318	-0.49315	-0.00020987	-0.73562	-0.00031305	425.56332094759154	35.458	2.145	35.458	35.088	37.233	0					208	77	5	0	0	0	0.01159	6	7084	7040;7084;7134;7180;7224;7274		80.896	65.157	1	23126000			39277	7546	22865	22866	47614;47615;47616;47617;47618;47619	47615					0.0421013261434382
RPRLQHSFSF	10	Unmodified	_RPRLQHSFSF_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.8414306640625	2	637.841271	1273.66799	0.15166	9.6736E-05	0.020208	1.2889E-05	0.17187	0.00010963	637.841224094861	35.456	0.92294	35.456	35.17	36.093	0					82	33	3	0	0	0	0.0035922	3	7110	7064;7110;7158		93.938	51.626	1	1542100			39278	7546	22865	22866	47620;47621;47622	47621					0.0421013261434382
RPRLQHSFSF	10	Unmodified	_RPRLQHSFSF_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.5635070800781	3	425.563273	1273.66799	-0.21912	-9.3249E-05	-0.37566	-0.00015987	-0.59478	-0.00025312	425.56326292204653	35.408	2.0582	35.483	35.123	37.181	0.075306					237	74	6	0	0	0	0.024627	5	7067	7026;7067;7117;7160;7203		66.683	34.203	1	24853000			39279	7546	22865	22866	47623;47624;47625;47626;47627	47624					0.0421013261434382
RPRLQHSFSF	10	Unmodified	_RPRLQHSFSF_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.84130859375	2	637.841271	1273.66799	0.40345	0.00025734	0.45622	0.00029099	0.85967	0.00054833	637.8411370086875	35.417	0.90046	35.492	35.182	36.083	0.075306					81	32	4	0	0	0	0.0033041	3	7102	7059;7102;7155		96.367	60.754	1	1787600			39280	7546	22865	22866	47628;47629;47630	47629					0.0421013261434382
RPRLQHSFSF	10	Unmodified	_RPRLQHSFSF_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.5634460449219	3	425.563273	1273.66799	-0.47616	-0.00020264	-0.12223	-5.2015E-05	-0.59839	-0.00025465	425.5633940659669	35.388	2.3681	35.465	35.141	37.509	0.077377					235	85	6	0	0	0	0.0053513	5	7064	7015;7064;7108;7159;7214		89.609	60.171	1	26177000			39281	7546	22865	22866	47631;47632;47633;47634;47635	47632					0.0421013261434382
RPRLQHSFSF	10	Unmodified	_RPRLQHSFSF_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.84130859375	2	637.841271	1273.66799	0.10908	6.9578E-05	1.2968	0.00082712	1.4058	0.0008967	637.8413337668776	35.394	0.90898	35.472	35.167	36.076	0.077377					92	32	5	0	0	0	0.0017661	3	7052	7052;7101;7150		110.55	61.025	1	1933200			39282	7546	22865	22866	47636;47637;47638	47636					0.0421013261434382
RPRLRPRRQRA	11	Unmodified	_RPRLRPRRQRA_					0	0	0			REV__ENST00000600883.1_1_19:58125663-58130179:+|nuORF	REV__ENST00000600883.1_1_19:58125663-58130179:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.3092041015625	3	487.974781	1460.90251	-0.12133	-5.9206E-05	0.36568	0.00017844	0.24435	0.00011924	487.97500657368045	103.03	0.3316	103.03	102.72	103.05	0					87	46	2	0	0	0	0.48486	1	27347	27347		0.094841	0	1	1910200	+		39283	20650	22866	22867	47639	47639					0.19049868213437549
RPRLRPRRQRA	11	Unmodified	_RPRLRPRRQRA_					0	0	0			REV__ENST00000600883.1_1_19:58125663-58130179:+|nuORF	REV__ENST00000600883.1_1_19:58125663-58130179:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.97479248046875	3	487.974781	1460.90251	0.070952	3.4623E-05	0.22171	0.00010819	0.29266	0.00014281	487.9748084926534	102.97	0.45118	102.99	102.59	103.04	0.016685					180	61	4	0	0	0	0.48486	1	27341	27341		0.094841	0	1	2522400	+		39284	20650	22866	22867	47640	47640					0.19049868213437549
RPRLRQVI	8	Unmodified	_RPRLRQVI_					0	0	0			REV__ENSG00000180767|ENST00000319340|CHST13	REV__ENSG00000180767|ENST00000319340|CHST13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3382568359375	2	519.338167	1036.66178	0.08334	4.3282E-05	0.058646	3.0457E-05	0.14199	7.3739E-05	519.338118179125	25.408	0.65585	25.352	25.048	25.704	-0.055931					58	22	3	0	0	0	0.32038	1	4041	4041		28.487	3.0875	1	507050	+		39285	18116	22867	22868	47641	47641					0.144916591735182
RPRLRVQGP	9	Unmodified	_RPRLRVQGP_					0	0	0			REV__nc|ENSG00000203666|Q5VUJ9|EFCAB2	REV__nc|ENSG00000203666|Q5VUJ9|EFCAB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2340698242188	2	539.833249	1077.65194	0.18099	9.7704E-05	-0.1757	-9.4847E-05	0.0052922	2.8569E-06	539.8332304692216	18.691	0.67343	18.633	18.341	19.014	-0.058172					35	23	2	0	0	0	0.25938	1	2007	2007		4.3292	0.73274	1	62762	+		39286	23165	22868	22869	47642	47642					0.11622471168129778
RPRLTKKQ	8	Unmodified	_RPRLTKKQ_					0	0	0			REV__ENSG00000075336|ENST00000169551|TIMM21	REV__ENSG00000075336|ENST00000169551|TIMM21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2313232421875	2	513.830175	1025.6458	0.035258	1.8117E-05	-1.7785	-0.00091383	-1.7432	-0.00089571	513.8289798293753	15.941	0.36808	15.879	15.638	16.006	-0.062534					21	12	2	0	0	0	0.34408	1	1117	1117		2.3027	0	1	57603	+		39287	13809	22869	22870	47643	47643					0.1339995293658376
RPRLTSNEKL	10	Unmodified	_RPRLTSNEKL_					0	0	0		ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2386474609375	3	405.238566	1212.69387	0.029306	1.1876E-05	-0.8462	-0.00034291	-0.81689	-0.00033104	405.2385624516901	21.084	1.5948	21.084	20.594	22.189	0					186	56	6	0	0	0	0.01783	4	2713	2671;2713;2757;2798		74.094	43.39	1	8354000			39288	7891	22870	22871	47644;47645;47646;47647	47645					0.09602982065962351
RPRLTSNEKL	10	Unmodified	_RPRLTSNEKL_					0	0	0		ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.3540649414062	2	607.354211	1212.69387	0.54889	0.00033337	-0.82808	-0.00050294	-0.27919	-0.00016957	607.3538083283539	21.097	1.0017	21.097	20.678	21.68	0					90	34	4	0	0	0	0.15485	3	2723	2677;2723;2767		42.835	23.473	1	742580			39289	7891	22870	22871	47648;47649;47650	47649					0.09602982065962351
RPRLTSNEKL	10	Unmodified	_RPRLTSNEKL_					0	0	0		ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2387390136719	3	405.238566	1212.69387	0.098258	3.9818E-05	-0.90605	-0.00036717	-0.8078	-0.00032735	405.2385629257088	21.231	2.0552	21.121	20.581	22.636	-0.11003					204	73	5	0	0	0	0.049253	4	2786	2735;2786;2831;2872		59.177	32.089	1	10249000			39290	7891	22870	22871	47651;47652;47653;47654	47652					0.09602982065962351
RPRLTSNEKL	10	Unmodified	_RPRLTSNEKL_					0	0	0		ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.35400390625	2	607.354211	1212.69387	0.66923	0.00040646	-0.80001	-0.00048589	-0.13078	-7.9431E-05	607.35382777754	21.246	0.95288	21.136	20.753	21.706	-0.11003					84	33	4	0	0	0	0.0086874	3	2788	2740;2788;2845		94.909	58.402	1	847800			39291	7891	22870	22871	47655;47656;47657	47656					0.09602982065962351
RPRLTSNEKL	10	Unmodified	_RPRLTSNEKL_					0	0	0		ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.3541870117188	2	607.354211	1212.69387	0.42976	0.00026101	-0.6581	-0.0003997	-0.22835	-0.00013869	607.3538871274985	21.139	0.96397	21.087	20.749	21.713	-0.05291					86	33	4	0	0	0	0.088207	4	2741	2689;2741;2793;2848		64.927	35.086	1	743970			39292	7891	22870	22871	47658;47659;47660;47661	47659					0.09602982065962351
RPRLTSNEKL	10	Unmodified	_RPRLTSNEKL_					0	0	0		ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.23876953125	3	405.238566	1212.69387	0.033705	1.3658E-05	-0.82674	-0.00033503	-0.79304	-0.00032137	405.23859081602035	21.15	1.9038	21.097	20.355	22.258	-0.052912					215	67	6	0	0	0	0.0056481	4	2747	2697;2747;2789;2833		87.878	51.483	1	9841900			39293	7891	22870	22871	47662;47663;47664;47665	47663					0.09602982065962351
RPRLVFHTQL	10	Unmodified	_RPRLVFHTQL_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.9191589355469	3	422.919168	1265.73567	0.049406	2.0895E-05	-0.1833	-7.752E-05	-0.13389	-5.6625E-05	422.91917849310823	37.922	1.4248	37.922	37.587	39.012	0					156	50	5	0	0	0	0.022405	4	7896	7810;7854;7896;7952		59.052	44.392	1	8282600			39294	3090;12135	22871	22872	47666;47667;47668;47669	47668					0.11343582545168829
RPRLVFHTQL	10	Unmodified	_RPRLVFHTQL_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8754272460938	2	633.875114	1265.73567	0.45404	0.00028781	-0.055237	-3.5013E-05	0.3988	0.00025279	633.875022840284	37.943	0.61621	37.943	37.679	38.295	0					49	21	3	0	0	0	0.0046086	1	7851	7851		93.938	53.699	1	807070			39295	3090;12135	22871	22872	47670	47670					0.11343582545168829
RPRLVFHTQL	10	Unmodified	_RPRLVFHTQL_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.9192199707031	3	422.919168	1265.73567	0.016704	7.0646E-06	-0.19746	-8.351E-05	-0.18076	-7.6446E-05	422.91915573483556	37.841	1.3609	37.932	37.581	38.942	0.090881					155	49	5	0	0	0	0.014191	4	7830	7783;7830;7881;7944		60.943	37.928	1	8798400			39296	3090;12135	22871	22872	47671;47672;47673;47674	47672					0.11343582545168829
RPRLVFHTQL	10	Unmodified	_RPRLVFHTQL_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.8753662109375	2	633.875114	1265.73567	0.47844	0.00030327	-0.3062	-0.00019409	0.17224	0.00010918	633.8749180825307	37.827	0.67979	37.918	37.693	38.373	0.090881					52	24	3	0	0	0	0.0082636	2	7818	7818;7867		84.522	54.682	1	694270			39297	3090;12135	22871	22872	47675;47676	47675					0.11343582545168829
RPRLVFHTQL	10	Unmodified	_RPRLVFHTQL_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.9190979003906	3	422.919168	1265.73567	-0.018633	-7.88E-06	-0.10142	-4.2891E-05	-0.12005	-5.0771E-05	422.91918733040234	37.786	1.4625	37.884	37.552	39.015	0.097527					146	52	4	0	0	0	0.018862	3	7850	7763;7809;7850		55.249	37.771	1	9787500			39298	3090;12135	22871	22872	47677;47678;47679	47679					0.11343582545168829
RPRLVFHTQL	10	Unmodified	_RPRLVFHTQL_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.875	2	633.875114	1265.73567	0.46471	0.00029457	0.0080476	5.1012E-06	0.47276	0.00029967	633.8749552919028	37.778	0.60672	37.876	37.628	38.235	0.09753					44	21	3	0	0	0	0.015119	1	7815	7815		77.049	55.458	1	654800			39299	3090;12135	22871	22872	47680	47680					0.11343582545168829
RPRNALLLL	9	Unmodified	_RPRNALLLL_					0	0	0		ENSG00000181523|ENST00000326317|SGSH;ENST00000571075.1_1_17:78190791-78194112:-|nuORF;ENST00000571051.5_1_17:78187969-78194112:-|nuORF;ENST00000575282.5_1_17:78187814-78194112:-|nuORF	ENSG00000181523|ENST00000326317|SGSH	ENSG00000181523|ENST00000326317|SGSH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3483276367188	2	533.3482	1064.68185	0.74717	0.0003985	-0.39468	-0.0002105	0.35248	0.000188	533.3479722738018	47.579	1.4443	47.579	47.162	48.606	0					109	51	4	0	0	0	0.0046874	3	10787	10787;10829;10873		88.904	38.971	1	7077500			39300	7238	22872	22873	47681;47682;47683	47681					0.15209410113470767
RPRNALLLL	9	Unmodified	_RPRNALLLL_					0	0	0		ENSG00000181523|ENST00000326317|SGSH;ENST00000571075.1_1_17:78190791-78194112:-|nuORF;ENST00000571051.5_1_17:78187969-78194112:-|nuORF;ENST00000575282.5_1_17:78187814-78194112:-|nuORF	ENSG00000181523|ENST00000326317|SGSH	ENSG00000181523|ENST00000326317|SGSH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3483276367188	2	533.3482	1064.68185	0.52774	0.00028147	-0.25404	-0.00013549	0.2737	0.00014598	533.3480537327368	47.533	1.5798	47.58	47.083	48.663	0.047523					117	58	4	0	0	0	0.0037552	3	10767	10767;10818;10869		96.285	38.971	1	8498600			39301	7238	22872	22873	47684;47685;47686	47684					0.15209410113470767
RPRNALLLL	9	Unmodified	_RPRNALLLL_					0	0	0		ENSG00000181523|ENST00000326317|SGSH;ENST00000571075.1_1_17:78190791-78194112:-|nuORF;ENST00000571051.5_1_17:78187969-78194112:-|nuORF;ENST00000575282.5_1_17:78187814-78194112:-|nuORF	ENSG00000181523|ENST00000326317|SGSH	ENSG00000181523|ENST00000326317|SGSH	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	533.3482	1064.68185	0.85624	0.00045667	-0.51979	-0.00027723	0.33645	0.00017944	533.3479222454822	47.536	1.4029	47.579	47.185	48.588	0.043324	-0.00039484	-0.00016234	NaN	96.285	110	52	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8331500			39302	7238	22872	22873							0.15209410113470767
RPRNPAGRTGL	11	Unmodified	_RPRNPAGRTGL_					0	0	0		nc|ENSG00000170502|Q9BW91-2|NUDT9;ENSG00000170502|ENST00000302174|NUDT9	nc|ENSG00000170502|Q9BW91-2|NUDT9	nc|ENSG00000170502|Q9BW91-2|NUDT9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8444213867188	2	597.844345	1193.67414	0.42471	0.00025391	-0.05195	-3.1058E-05	0.37276	0.00022285	597.8442501171078	17.548	0.92576	17.548	17.151	18.077	0					67	31	3	0	0	0	0.43508	1	1657	1657		6.6304	0.42459	1	120050			39303	6458	22873	22874	47687	47687					0.08504650845884498
RPRNPAGRTGL	11	Unmodified	_RPRNPAGRTGL_					0	0	0		nc|ENSG00000170502|Q9BW91-2|NUDT9;ENSG00000170502|ENST00000302174|NUDT9	nc|ENSG00000170502|Q9BW91-2|NUDT9	nc|ENSG00000170502|Q9BW91-2|NUDT9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8447265625	2	597.844345	1193.67414	0.30303	0.00018116	0.059426	3.5527E-05	0.36245	0.00021669	597.8443240336142	17.833	0.7793	17.716	17.259	18.038	-0.11739					56	26	3	0	0	0	0.42126	1	1744	1744		8.4443	1.8139	1	128780			39304	6458	22873	22874	47688	47688					0.08504650845884498
RPRNYILS	8	Unmodified	_RPRNYILS_					0	0	0		ENST00000477165.1_1_9:131774250-131776725:-|nuORF;ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2	ENST00000477165.1_1_9:131774250-131776725:-|nuORF	ENST00000477165.1_1_9:131774250-131776725:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2266845703125	2	509.793258	1017.57196	0.14489	7.3863E-05	0.36414	0.00018563	0.50902	0.0002595	509.79340958125914	28.578	0.65043	28.574	28.333	28.984	-0.0042572					47	22	3	0	0	0	0.34198	1	4953	4953		10.824	5.5933	1	494010			39305	4805	22874	22875	47689	47689					0.06387984774266897
RPRPDDLEI	9	Unmodified	_RPRPDDLEI_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7993774414062	2	555.798737	1109.58292	0.65462	0.00036383	-0.80741	-0.00044876	-0.15279	-8.4923E-05	555.7981190715084	33.91	0.8537	33.91	33.646	34.5	0					70	30	4	0	0	0	0.0041491	2	6625	6625;6672		93.166	47.466	1	848040			39306	5032	22875	22876	47690;47691	47690					0.03251342357884823
RPRPDDLEI	9	Unmodified	_RPRPDDLEI_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7986450195312	2	555.798737	1109.58292	0.80065	0.000445	-1.3302	-0.00073935	-0.5296	-0.00029435	555.7978135107646	33.77	1.1635	33.836	33.566	34.73	0.06636					83	41	4	0	0	0	0.017549	2	6609	6559;6609		67.838	38.453	1	891270			39307	5032	22875	22876	47692;47693	47693					0.03251342357884823
RPRPDDLEI	9	Unmodified	_RPRPDDLEI_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7986450195312	2	555.798737	1109.58292	0.1088	6.047E-05	-0.52126	-0.00028971	-0.41246	-0.00022924	555.7983974703052	33.783	0.82861	33.849	33.577	34.406	0.066704					63	29	3	0	0	0	0.026579	2	6552	6552;6601		61.602	33.973	1	968750			39308	5032	22875	22876	47694;47695	47694					0.03251342357884823
RPRPDEERPL	10	Unmodified	_RPRPDEERPL_					0	0	0		ENSG00000105122|ENST00000343625|RASAL3;nc|ENSG00000105122|Q86YV0-2|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2302551269531	3	422.230071	1263.66838	-0.050611	-2.137E-05	0.59626	0.00025176	0.54565	0.00023039	422.23022270972376	20.173	1.0964	20.173	19.877	20.973	0					97	39	4	0	0	0	0.067194	3	2483	2432;2483;2533		49.159	36.303	1	881080			39309	1946	22876	22877	47696;47697;47698	47697					0.0470950754356636
RPRPDEERPL	10	Unmodified	_RPRPDEERPL_					0	0	0		ENSG00000105122|ENST00000343625|RASAL3;nc|ENSG00000105122|Q86YV0-2|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.2301940917969	3	422.230071	1263.66838	0.18564	7.8383E-05	0.32366	0.00013666	0.5093	0.00021504	422.230141885603	20.43	1.2146	20.32	19.906	21.121	-0.11003					96	43	4	0	0	0	0.026454	3	2553	2506;2553;2619		57.885	40.836	1	789850			39310	1946	22876	22877	47699;47700;47701	47700					0.0470950754356636
RPRPDEERPL	10	Unmodified	_RPRPDEERPL_					0	0	0		ENSG00000105122|ENST00000343625|RASAL3;nc|ENSG00000105122|Q86YV0-2|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2302551269531	3	422.230071	1263.66838	0.33579	0.00014178	0.27773	0.00011727	0.61352	0.00025905	422.23012345557987	20.263	1.1282	20.21	19.819	20.947	-0.052912					91	40	3	0	0	0	0.02113	3	2502	2455;2502;2556		63.164	47.625	1	823150			39311	1946	22876	22877	47702;47703;47704	47703					0.0470950754356636
RPRPERNILVL	11	Unmodified	_RPRPERNILVL_					0	0	0		nc|ENSG00000215421|Q9C0G0-3|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407;ENSG00000215421|ENST00000299687|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.9487609863281	3	454.949127	1361.82555	0.28044	0.00012759	-0.31555	-0.00014356	-0.03511	-1.5973E-05	454.94889051090894	37.235	0.51278	37.328	37.06	37.573	0.093014					37	18	3	0	0	0	0.32907	1	7642	7642		19.615	13.423	1	351930			39312	8407	22877	22878	47705	47705					0.15911212153741872
RPRPERNILVL	11	Unmodified	_RPRPERNILVL_					0	0	0		nc|ENSG00000215421|Q9C0G0-3|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407;ENSG00000215421|ENST00000299687|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	454.949127	1361.82555	0.56215	0.00025575	-0.61173	-0.00027831	-0.049582	-2.2557E-05	454.9487843921073	37.336	0.49186	37.336	37.124	37.616	0	0.0081055	-0.00025252	NaN	19.615	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361440			39313	8407	22877	22878							0.15911212153741872
RPRPERNILVL	11	Unmodified	_RPRPERNILVL_					0	0	0		nc|ENSG00000215421|Q9C0G0-3|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407;ENSG00000215421|ENST00000299687|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	454.949127	1361.82555	0.23745	0.00010803	-0.37195	-0.00016922	-0.1345	-6.1189E-05	454.94887307180625	37.231	0.51623	37.318	37.062	37.578	0.08741	-0.0090173	7.4746E-05	NaN	19.615	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335220			39314	8407	22877	22878							0.15911212153741872
RPRPEYVAIF	10	Unmodified	_RPRPEYVAIF_					0	0	0		nc|ENSG00000119977|Q6NUS6-3|TCTN3;nc|ENSG00000119977|Q6NUS6-5|TCTN3;ENSG00000119977|ENST00000371217|TCTN3	nc|ENSG00000119977|Q6NUS6-3|TCTN3	nc|ENSG00000119977|Q6NUS6-3|TCTN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.23486328125	2	624.348397	1246.68224	0.59873	0.00037381	-0.59113	-0.00036907	0.0076018	4.7462E-06	624.8494352386911	47.838	0.44319	47.838	47.634	48.077	0					20	15	2	0	0	0	0.31119	1	10938	10938		13.615	3.4643	1	1487100			39315	2923	22878	22879	47706	47706					0.06876785042641131
RPRPEYVAIF	10	Unmodified	_RPRPEYVAIF_					0	0	0		nc|ENSG00000119977|Q6NUS6-3|TCTN3;nc|ENSG00000119977|Q6NUS6-5|TCTN3;ENSG00000119977|ENST00000371217|TCTN3	nc|ENSG00000119977|Q6NUS6-3|TCTN3	nc|ENSG00000119977|Q6NUS6-3|TCTN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.234375	2	624.348397	1246.68224	0.39587	0.00024716	-0.1919	-0.00011981	0.20397	0.00012735	624.3480591032802	47.799	0.27293	47.846	47.621	47.893	0.047523					16	9	2	0	0	0	0.27086	1	10873	10873		32.037	10.291	1	611890			39316	2923	22878	22879	47707	47707					0.06876785042641131
RPRPEYVAIF	10	Unmodified	_RPRPEYVAIF_					0	0	0		nc|ENSG00000119977|Q6NUS6-3|TCTN3;nc|ENSG00000119977|Q6NUS6-5|TCTN3;ENSG00000119977|ENST00000371217|TCTN3	nc|ENSG00000119977|Q6NUS6-3|TCTN3	nc|ENSG00000119977|Q6NUS6-3|TCTN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.2349853515625	2	624.348397	1246.68224	0.41657	0.00026008	-0.2681	-0.00016739	0.14847	9.2694E-05	624.8496792049519	47.831	0.31498	47.874	47.611	47.926	0.043324					18	11	2	0	0	0	0.23628	1	10888	10888		35.612	19.765	1	1007500			39317	2923	22878	22879	47708	47708					0.06876785042641131
RPRPGNILL	9	Unmodified	_RPRPGNILL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3243408203125	2	518.324725	1034.6349	-1.0113	-0.0005242	-0.084773	-4.394E-05	-1.0961	-0.00056814	518.3248067336519	34.841	1.537	34.841	34.5	36.037	0					153	55	5	0	0	0	0.0046874	6	6919	6867;6919;6971;7021;7070;7142		88.904	38.049	1	12143000			39318	1654	22879	22880	47709;47710;47711;47712;47713;47714	47710					0.11896550562323682
RPRPGNILL	9	Unmodified	_RPRPGNILL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3243408203125	2	518.324725	1034.6349	-1.2215	-0.00063314	0.11644	6.0351E-05	-1.1051	-0.00057279	518.3249073709375	34.762	1.6679	34.837	34.496	36.164	0.075306					156	60	5	0	0	0	0.01083	6	6888	6840;6888;6933;6975;7027;7079		78.149	38.192	1	12945000			39319	1654	22879	22880	47715;47716;47717;47718;47719;47720	47716					0.11896550562323682
RPRPGNILL	9	Unmodified	_RPRPGNILL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.324462890625	2	518.324725	1034.6349	-0.54087	-0.00028035	-0.45551	-0.0002361	-0.99639	-0.00051645	518.3246480162352	34.725	1.6018	34.803	34.474	36.076	0.077377					177	57	5	0	0	0	0.0046874	5	6878	6828;6878;6920;6964;7016		88.904	38.049	1	12919000			39320	1654	22879	22880	47721;47722;47723;47724;47725	47722					0.11896550562323682
RPRPGNILLQL	11	Unmodified	_RPRPGNILLQL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2664794921875	3	426.266456	1275.77754	-0.076976	-3.2812E-05	0.14964	6.3785E-05	0.072661	3.0973E-05	426.2665142345881	52.241	0.93987	52.241	51.885	52.824	0					92	33	4	0	0	0	0.12239	3	12200	12200;12247;12293		25.997	4.0859	1	3919000			39321	1654	22880	22881	47726;47727;47728	47726					0.1506813823370976
RPRPGNILLQL	11	Unmodified	_RPRPGNILLQL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.8966064453125	2	638.896046	1275.77754	0.3339	0.00021333	0.056297	3.5968E-05	0.3902	0.0002493	638.8960981007821	52.224	0.65885	52.224	51.941	52.6	0					62	23	4	0	0	0	0.0002783	3	12214	12214;12265;12321		106.94	79.311	1	1830100			39322	1654	22880	22881	47729;47730;47731	47729					0.1506813823370976
RPRPGNILLQL	11	Unmodified	_RPRPGNILLQL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2664794921875	3	426.266456	1275.77754	-0.056288	-2.3994E-05	0.096676	4.121E-05	0.040387	1.7216E-05	426.26648759664874	52.15	1.0051	52.201	51.817	52.822	0.050575					98	36	5	0	0	0	0.055577	2	12234	12187;12234		35.08	4.6482	1	4092500			39323	1654	22880	22881	47732;47733	47733					0.1506813823370976
RPRPGNILLQL	11	Unmodified	_RPRPGNILLQL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.8963623046875	2	638.896046	1275.77754	0.54678	0.00034934	-0.097147	-6.2067E-05	0.44963	0.00028727	638.8959383086438	52.117	0.70572	52.168	51.926	52.632	0.050575					63	25	4	0	0	0	2.0254E-05	2	12244	12197;12244		114.65	91.913	1	2018800			39324	1654	22880	22881	47734;47735	47735					0.1506813823370976
RPRPGNILLQL	11	Unmodified	_RPRPGNILLQL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.2664794921875	3	426.266456	1275.77754	-0.19152	-8.1638E-05	0.17791	7.5836E-05	-0.013611	-5.8019E-06	426.2665523352939	52.365	0.97861	52.364	52.034	53.013	-0.00081253					85	35	4	0	0	0	0.12239	3	12283	12237;12283;12327		24.957	1.9124	1	4540100			39325	1654	22880	22881	47736;47737;47738	47737					0.1506813823370976
RPRPGNILLQL	11	Unmodified	_RPRPGNILLQL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.8964233398438	2	638.896046	1275.77754	0.39508	0.00025242	0.1056	6.7467E-05	0.50068	0.00031988	638.8960300316926	52.345	0.76111	52.344	52.06	52.821	-0.00080872					69	27	4	0	0	0	0.00079344	3	12291	12245;12291;12347		99.755	77.019	1	2110300			39326	1654	22880	22881	47739;47740;47741	47740					0.1506813823370976
RPRPNTFVIR	10	Unmodified	_RPRPNTFVIR_					0	0	0		ENST00000487537.2_1_19:40747718-40761168:-|nuORF;ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000487537.2_1_19:40747718-40761168:-|nuORF	ENST00000487537.2_1_19:40747718-40761168:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.2507629394531	3	419.250918	1254.73092	-0.13938	-5.8436E-05	-0.081937	-3.4352E-05	-0.22132	-9.2788E-05	419.2508158895694	26.586	0.68682	26.586	26.321	27.007	0					55	23	3	0	0	0	0.25422	1	4416	4416		18.34	6.165	1	254690			39327	1956	22881	22882	47742	47742					0.11374698402391914
RPRPNTFVIR	10	Unmodified	_RPRPNTFVIR_					0	0	0		ENST00000487537.2_1_19:40747718-40761168:-|nuORF;ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000487537.2_1_19:40747718-40761168:-|nuORF	ENST00000487537.2_1_19:40747718-40761168:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.2508239746094	3	419.250918	1254.73092	0.030317	1.271E-05	-0.23529	-9.8647E-05	-0.20498	-8.5937E-05	419.2508338426243	26.609	0.61489	26.57	26.235	26.85	-0.038671					51	21	3	0	0	0	0.14624	1	4393	4393		29.291	18.764	1	224890			39328	1956	22881	22882	47743	47743					0.11374698402391914
RPRPNTFVIR	10	Unmodified	_RPRPNTFVIR_					0	0	0		ENST00000487537.2_1_19:40747718-40761168:-|nuORF;ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	ENST00000487537.2_1_19:40747718-40761168:-|nuORF	ENST00000487537.2_1_19:40747718-40761168:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.2507019042969	3	419.250918	1254.73092	0.26973	0.00011309	-0.40195	-0.00016852	-0.13222	-5.5433E-05	419.25074375425936	26.633	0.64935	26.611	26.298	26.947	-0.022238					50	22	3	0	0	0	0.20497	1	4404	4404		23.016	12.488	1	282400			39329	1956	22881	22882	47744	47744					0.11374698402391914
RPRPPGPK	8	Unmodified	_RPRPPGPK_					0	0	0			REV__ENST00000311922.3_1_8:126442809-126443172:+|nuORF	REV__ENST00000311922.3_1_8:126442809-126443172:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.776611328125	2	452.777411	903.540269	-1.2789	-0.00057904	-0.23755	-0.00010756	-1.5164	-0.0006866	452.7771883919691	34.788	0.77254	34.788	34.556	35.328	0					62	27	3	0	0	0	0.43043	1	6936	6936		12.532	12.532	1	1078200			39330	19905	22882	22883	47745	47745					0.08464036810994457
RPRPPGPK	8	Unmodified	_RPRPPGPK_					0	0	0			REV__ENST00000311922.3_1_8:126442809-126443172:+|nuORF	REV__ENST00000311922.3_1_8:126442809-126443172:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.77655029296875	2	452.777411	903.540269	-1.4326	-0.00064867	-0.14678	-6.6458E-05	-1.5794	-0.00071513	452.7772230178211	34.734	0.76945	34.81	34.549	35.318	0.075306					62	27	3	0	0	0	0.37937	1	6880	6880		21.747	21.747	1	1212700			39331	19905	22882	22883	47746	47746					0.08464036810994457
RPRPPGPK	8	Unmodified	_RPRPPGPK_					0	0	0			REV__ENST00000311922.3_1_8:126442809-126443172:+|nuORF	REV__ENST00000311922.3_1_8:126442809-126443172:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	452.777411	903.540269	-1.2789	-0.00057904	-0.23755	-0.00010756	-1.5164	-0.0006866	452.7771883919691	34.788	0.77254	34.788	34.556	35.328	0	-0.0094683	0.0001394	NaN	21.747	62	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1078200			39332	19905	22882	22883							0.08464036810994457
RPRPPGPK	8	Unmodified	_RPRPPGPK_					0	0	0			REV__ENST00000311922.3_1_8:126442809-126443172:+|nuORF	REV__ENST00000311922.3_1_8:126442809-126443172:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	452.777411	903.540269	-1.4326	-0.00064867	-0.14678	-6.6458E-05	-1.5794	-0.00071513	452.7772230178211	34.734	0.76945	34.81	34.549	35.318	0.075306	0.012129	0.0002216	NaN	21.747	62	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1212700			39333	19905	22882	22883							0.08464036810994457
RPRPPITL	8	Unmodified	_RPRPPITL_					0	0	0		nc|ENSG00000136715|Q9H0E3-2|SAP130;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.2274169921875	2	475.300719	948.586885	-0.5193	-0.00024682	0.64169	0.00030499	0.12238	5.817E-05	475.3008819380203	34.499	0.67665	34.499	34.048	34.725	0					38	23	2	0	0	0	0.34294	1	6735	6735		7.2892	2.5332	1	156520			39334	3991	22883	22884	47747	47747					0.11053476642268834
RPRPPITL	8	Unmodified	_RPRPPITL_					0	0	0		nc|ENSG00000136715|Q9H0E3-2|SAP130;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.2278137207031	2	475.300719	948.586885	-0.44596	-0.00021196	0.47015	0.00022346	0.024196	1.15E-05	475.30087762116	34.463	0.69191	34.538	34.021	34.713	0.075306					39	24	2	0	0	0	0.34294	1	6760	6760		7.2892	2.5332	1	154290			39335	3991	22883	22884	47748	47748					0.11053476642268834
RPRPPITLL	9	Unmodified	_RPRPPITLL_					0	0	0		nc|ENSG00000136715|Q9H0E3-2|SAP130;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8428955078125	2	531.842751	1061.67095	0.46422	0.00024689	-0.15257	-8.1143E-05	0.31165	0.00016575	531.8426652988616	44.85	1.2791	44.919	44.463	45.743	0.068569					116	45	4	0	0	0	0.13748	3	9978	9924;9978;10024		32.786	15.176	1	5316100			39336	3991	22884	22885	47749;47750;47751	47750					0.14258007739181267
RPRPPITLL	9	Unmodified	_RPRPPITLL_					0	0	0		nc|ENSG00000136715|Q9H0E3-2|SAP130;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8429565429688	2	531.842751	1061.67095	0.64763	0.00034443	-0.31786	-0.00016905	0.32976	0.00017538	531.8425636810389	44.848	1.2634	44.923	44.449	45.713	0.075047					126	46	4	0	0	0	0.13748	2	9974	9923;9974		32.786	12.371	1	4579200			39337	3991	22884	22885	47752;47753	47753					0.14258007739181267
RPRPPPFLGP	10	Unmodified	_RPRPPPFLGP_					0	0	0		ENST00000494101.1_1_16:30680055-30680963:+|nuORF;nc|ENSG00000156860|Q9HAH7|FBRS;nc|ENSG00000156860|Q9HAH7-1|FBRS;ENSG00000156860|ENST00000356166|FBRS	ENST00000494101.1_1_16:30680055-30680963:+|nuORF	ENST00000494101.1_1_16:30680055-30680963:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8076782226562	2	567.33255	1132.65055	0.15417	8.7467E-05	-0.29326	-0.00016637	-0.13909	-7.8908E-05	567.3322711588013	39.947	0.48142	39.947	39.777	40.259	0					25	16	2	0	0	0	0.30093	1	8508	8508		21.537	13.928	1	170290			39338	5260	22885	22886	47754	47754					0.08952837079368692
RPRPPPFLGP	10	Unmodified	_RPRPPPFLGP_					0	0	0		ENST00000494101.1_1_16:30680055-30680963:+|nuORF;nc|ENSG00000156860|Q9HAH7|FBRS;nc|ENSG00000156860|Q9HAH7-1|FBRS;ENSG00000156860|ENST00000356166|FBRS	ENST00000494101.1_1_16:30680055-30680963:+|nuORF	ENST00000494101.1_1_16:30680055-30680963:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.8074951171875	2	567.33255	1132.65055	0.51849	0.00029416	-0.66963	-0.00037991	-0.15114	-8.5748E-05	567.3320811445169	39.894	0.48537	39.987	39.69	40.176	0.09267					24	16	2	0	0	0	0.31691	1	8467	8467		9.3831	3.6513	1	125510			39339	5260	22885	22886	47755	47755					0.08952837079368692
RPRPPPFLGP	10	Unmodified	_RPRPPPFLGP_					0	0	0		ENST00000494101.1_1_16:30680055-30680963:+|nuORF;nc|ENSG00000156860|Q9HAH7|FBRS;nc|ENSG00000156860|Q9HAH7-1|FBRS;ENSG00000156860|ENST00000356166|FBRS	ENST00000494101.1_1_16:30680055-30680963:+|nuORF	ENST00000494101.1_1_16:30680055-30680963:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.807861328125	2	567.33255	1132.65055	0.28334	0.00016075	-0.66506	-0.00037731	-0.38172	-0.00021656	567.3323767240563	39.822	0.49582	39.921	39.65	40.146	0.099407					24	17	2	0	0	0	0.3144	1	8435	8435		13.042	4.2971	1	131220			39340	5260	22885	22886	47756	47756					0.08952837079368692
RPRPPPVE	8	Unmodified	_RPRPPPVE_					0	0	0		ENST00000482806.5_1_7:150774217-150777853:-|nuORF;nc|ENSG00000164896|Q14296-4|FASTK;nc|ENSG00000164896|Q14296-3|FASTK;ENSG00000164896|ENST00000297532|FASTK;ENST00000478477.1_1_7:150775105-150776989:-|nuORF;ENST00000467237.5_1_7:150776545-150777049:-|nuORF;FASTK|p.L287*|1|0.14|ENSG00000164896|chr7:151078060-151078060|T/-|frameshift_variant	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2749938964844	2	474.274701	946.534849	-0.10258	-4.8649E-05	0.10237	4.8551E-05	-0.0002083	-9.8792E-08	474.274695853528	25.501	0.63969	25.47	25.098	25.738	-0.031408					56	22	3	0	0	0	0.4354	1	4111	4111		10.824	0	1	256990			39341	5893	22886	22887	47757	47757					0.05944313228519604
RPRPPPVEQV	10	Unmodified	_RPRPPPVEQV_					0	0	0		ENST00000482806.5_1_7:150774217-150777853:-|nuORF;nc|ENSG00000164896|Q14296-4|FASTK;nc|ENSG00000164896|Q14296-3|FASTK;ENSG00000164896|ENST00000297532|FASTK;ENST00000478477.1_1_7:150775105-150776989:-|nuORF;ENST00000467237.5_1_7:150776545-150777049:-|nuORF;FASTK|p.L287*|1|0.14|ENSG00000164896|chr7:151078060-151078060|T/-|frameshift_variant	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8381958007812	2	587.838197	1173.66184	0.26046	0.00015311	-0.29981	-0.00017624	-0.039343	-2.3127E-05	587.8378866050732	26.56	0.71147	26.56	26.296	27.007	0					42	24	3	0	0	0	0.26354	1	4390	4390		24.882	10.043	1	181580			39342	5893	22887	22888	47758	47758					0.0819561438281653
RPRPPPVEQV	10	Unmodified	_RPRPPPVEQV_					0	0	0		ENST00000482806.5_1_7:150774217-150777853:-|nuORF;nc|ENSG00000164896|Q14296-4|FASTK;nc|ENSG00000164896|Q14296-3|FASTK;ENSG00000164896|ENST00000297532|FASTK;ENST00000478477.1_1_7:150775105-150776989:-|nuORF;ENST00000467237.5_1_7:150776545-150777049:-|nuORF;FASTK|p.L287*|1|0.14|ENSG00000164896|chr7:151078060-151078060|T/-|frameshift_variant	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.8385009765625	2	587.838197	1173.66184	0.23298	0.00013695	-0.53018	-0.00031166	-0.2972	-0.00017471	587.837902556438	26.589	0.61489	26.55	26.235	26.85	-0.038671					38	21	2	0	0	0	0.35267	1	4403	4403		12.175	2.1008	1	192720			39343	5893	22887	22888	47759	47759					0.0819561438281653
RPRPPPVEQV	10	Unmodified	_RPRPPPVEQV_					0	0	0		ENST00000482806.5_1_7:150774217-150777853:-|nuORF;nc|ENSG00000164896|Q14296-4|FASTK;nc|ENSG00000164896|Q14296-3|FASTK;ENSG00000164896|ENST00000297532|FASTK;ENST00000478477.1_1_7:150775105-150776989:-|nuORF;ENST00000467237.5_1_7:150776545-150777049:-|nuORF;FASTK|p.L287*|1|0.14|ENSG00000164896|chr7:151078060-151078060|T/-|frameshift_variant	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.837890625	2	587.838197	1173.66184	0.51806	0.00030453	-0.74847	-0.00043998	-0.23041	-0.00013544	587.8377071924185	26.61	0.70727	26.588	26.266	26.974	-0.022236					45	24	3	0	0	0	0.29048	1	4405	4405		21.59	9.3495	1	199160			39344	5893	22887	22888	47760	47760					0.0819561438281653
RPRPPVWVA	9	Unmodified	_RPRPPVWVA_					0	0	0			REV__nc|ENSG00000079102|Q06455-3|RUNX1T1	REV__nc|ENSG00000079102|Q06455-3|RUNX1T1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.763916015625	2	539.319443	1076.62433	0.18909	0.00010198	2.3243	0.0012535	2.5134	0.0013555	539.3206200044988	14.84	0.34335	14.73	14.587	14.93	-0.10981					20	11	3	0	0	0	0.25938	1	817	817		4.3292	0	1	68569	+		39345	13864	22888	22889	47761	47761					0.0890856790788348
RPRPPVWVA	9	Unmodified	_RPRPPVWVA_					0	0	0			REV__nc|ENSG00000079102|Q06455-3|RUNX1T1	REV__nc|ENSG00000079102|Q06455-3|RUNX1T1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	539.319443	1076.62433	0.2137	0.00011525	1.8266	0.00098514	2.0403	0.0011004	539.3205693987352	14.873	0.36737	14.808	14.646	15.013	-0.064413	0.055483	-0.00037498	NaN	4.3292	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65856	+		39346	13864	22888	22889							0.0890856790788348
RPRPRAIAVAL	11	Unmodified	_RPRPRAIAVAL_					0	0	0		ENST00000587837.5_1_19:36398461-36399157:-|nuORF	ENST00000587837.5_1_19:36398461-36399157:-|nuORF	ENST00000587837.5_1_19:36398461-36399157:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.2629699707031	3	407.263046	1218.76731	0.26935	0.0001097	-0.25594	-0.00010423	0.013413	5.4627E-06	407.26292897588445	32.383	0.76148	32.438	32.157	32.919	0.055313					56	27	3	0	0	0	0.3826	1	6151	6151		13.519	0.64606	1	339860			39347	12137	22889	22890	47762	47762					0.16667575299129567
RPRPRAIAVAL	11	Unmodified	_RPRPRAIAVAL_					0	0	0		ENST00000587837.5_1_19:36398461-36399157:-|nuORF	ENST00000587837.5_1_19:36398461-36399157:-|nuORF	ENST00000587837.5_1_19:36398461-36399157:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2628479003906	3	407.263046	1218.76731	0.023127	9.4189E-06	-0.0025022	-1.0191E-06	0.020625	8.3999E-06	407.26301363553563	32.361	0.68028	32.416	32.223	32.903	0.054371					51	24	3	0	0	0	0.3826	1	6155	6155		13.519	0.64606	1	345410			39348	12137	22889	22890	47763	47763					0.16667575299129567
RPRPRAYYL	9	Unmodified	_RPRPRAYYL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.3412475585938	2	596.340907	1190.66726	0.30095	0.00017947	0.2585	0.00015416	0.55945	0.00033362	596.3409435357511	25.797	0.8186	25.797	25.591	26.41	0					65	28	3	0	0	0	0.21303	3	4189	4142;4189;4248		21.747	7.8406	1	619130			39349	7466	22890	22891	47764;47765;47766	47765					0.07955337965336184
RPRPRAYYL	9	Unmodified	_RPRPRAYYL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.3411254882812	2	596.340907	1190.66726	0.26036	0.00015526	0.21157	0.00012617	0.47193	0.00028143	596.3408866423356	25.878	0.75995	25.839	25.582	26.342	-0.038671					63	26	3	0	0	0	0.12846	3	4204	4154;4204;4261		34.102	11.366	1	550740			39350	7466	22890	22891	47767;47768;47769	47768					0.07955337965336184
RPRPRAYYL	9	Unmodified	_RPRPRAYYL_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.34130859375	2	596.340907	1190.66726	0.30594	0.00018245	0.14334	8.5481E-05	0.44929	0.00026793	596.3408597284011	25.933	0.84244	25.911	25.659	26.502	-0.022238					71	29	3	0	0	0	0.12846	4	4228	4186;4228;4274;4350		34.102	11.366	1	365270			39351	7466	22890	22891	47770;47771;47772;47773	47771					0.07955337965336184
RPRPRPHGR	9	Unmodified	_RPRPRPHGR_					0	0	0		ENST00000373896.7_2_9:123636327-123639570:-|nuORF	ENST00000373896.7_2_9:123636327-123639570:-|nuORF	ENST00000373896.7_2_9:123636327-123639570:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.269287109375	2	564.834114	1127.65368	0.057991	3.2756E-05	2.5739	0.0014538	2.6319	0.0014866	564.8355653057538	27.439	0.54232	27.439	27.354	27.896	0					41	18	3	0	0	0	0.25988	1	4749	4749		3.9444	0	1	330140			39352	9882	22891	22892	47774	47774					0.09495524976750858
RPRPRPHGR	9	Unmodified	_RPRPRPHGR_					0	0	0		ENST00000373896.7_2_9:123636327-123639570:-|nuORF	ENST00000373896.7_2_9:123636327-123639570:-|nuORF	ENST00000373896.7_2_9:123636327-123639570:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.834114	1127.65368	0.11834	6.6842E-05	2.6213	0.0014806	2.7396	0.0015474	564.8357037206052	27.458	0.45483	27.437	27.321	27.776	-0.021412	0.0039901	6.0496E-05	NaN	3.9444	35	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371290			39353	9882	22891	22892							0.09495524976750858
RPRPRPHGR	9	Unmodified	_RPRPRPHGR_					0	0	0		ENST00000373896.7_2_9:123636327-123639570:-|nuORF	ENST00000373896.7_2_9:123636327-123639570:-|nuORF	ENST00000373896.7_2_9:123636327-123639570:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	564.834114	1127.65368	0.00092627	5.2319E-07	2.5286	0.0014283	2.5296	0.0014288	564.8356106772821	27.435	0.38299	27.423	27.344	27.727	-0.01156	-0.0096544	-4.416E-05	NaN	3.9444	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	404410			39354	9882	22891	22892							0.09495524976750858
RPRPSAAPR	9	Unmodified	_RPRPSAAPR_					0	0	0		ENST00000457594.2_7:74237150-74267816:-|nuORF	ENST00000457594.2_7:74237150-74267816:-|nuORF	ENST00000457594.2_7:74237150-74267816:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2962341308594	2	504.296499	1006.57845	-0.05656	-2.8523E-05	-0.2815	-0.00014196	-0.33806	-0.00017048	504.29641954307954	13.517	0.81678	13.45	13.189	14.005	-0.067496					90	28	4	0	0	0	0.27726	1	529	529		12.241	0	1	1767900			39355	10706	22892	22893	47775	47775					0.0754192272564751
RPRPSEDTFL	10	Unmodified	_RPRPSEDTFL_					0	0	0		ENSG00000160813|ENST00000292330|PPP1R35	ENSG00000160813|ENST00000292330|PPP1R35	ENSG00000160813|ENST00000292330|PPP1R35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.31689453125	2	609.317294	1216.62004	0.59801	0.00036438	-0.1791	-0.00010913	0.4189	0.00025525	609.3170774624887	33.663	0.80023	33.663	33.393	34.193	0					67	28	3	0	0	0	0.0092666	2	6549	6549;6597		83.429	45.253	1	783800			39356	5492	22893	22894	47776;47777	47776					0.020390139036408073
RPRPSEDTFL	10	Unmodified	_RPRPSEDTFL_					0	0	0		ENSG00000160813|ENST00000292330|PPP1R35	ENSG00000160813|ENST00000292330|PPP1R35	ENSG00000160813|ENST00000292330|PPP1R35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.3168334960938	2	609.317294	1216.62004	0.72178	0.00043979	-0.14658	-8.9314E-05	0.5752	0.00035048	609.3170388960455	33.549	0.80014	33.616	33.266	34.066	0.06636					68	28	3	0	0	0	0.0092666	3	6483	6483;6533;6583		83.429	45.253	1	826870			39357	5492	22893	22894	47778;47779;47780	47778					0.020390139036408073
RPRPSEDTFL	10	Unmodified	_RPRPSEDTFL_					0	0	0		ENSG00000160813|ENST00000292330|PPP1R35	ENSG00000160813|ENST00000292330|PPP1R35	ENSG00000160813|ENST00000292330|PPP1R35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.317138671875	2	609.317294	1216.62004	0.12677	7.7244E-05	0.4275	0.00026048	0.55427	0.00033773	609.3174727350623	33.537	0.77446	33.604	33.297	34.071	0.066704					68	27	3	0	0	0	0.017732	2	6486	6486;6535		74.2	38.073	1	668650			39358	5492	22893	22894	47781;47782	47781					0.020390139036408073
RPRPSGEEVL	10	Unmodified	_RPRPSGEEVL_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3118896484375	2	570.312012	1138.60947	0.13138	7.4927E-05	-0.042714	-2.436E-05	0.088665	5.0567E-05	570.3118047493963	24.018	0.68521	24.018	23.769	24.454	0					51	23	4	0	0	0	0.28174	2	3604	3604;3653		22.658	11.163	1	195060			39359	1562	22894	22895	47783;47784	47783					0.045710312492246885
RPRPSGEEVL	10	Unmodified	_RPRPSGEEVL_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3115844726562	2	570.312012	1138.60947	0.35019	0.00019972	-0.035489	-2.024E-05	0.31471	0.00017948	570.3117701702447	24.199	0.61907	24.126	23.879	24.498	-0.072559					45	20	3	0	0	0	0.324	2	3652	3652;3708		17.443	9.2871	1	191130			39360	1562	22894	22895	47785;47786	47785					0.045710312492246885
RPRPSGEEVL	10	Unmodified	_RPRPSGEEVL_					0	0	0		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.3118896484375	2	570.312012	1138.60947	0.21566	0.00012299	-0.18577	-0.00010595	0.029889	1.7046E-05	570.3117058788288	24.231	0.71033	24.192	23.909	24.619	-0.038927					52	24	3	0	0	0	0.31681	2	3694	3650;3694		18.373	9.2871	1	232910			39361	1562	22894	22895	47787;47788	47788					0.045710312492246885
RPRPSSVL	8	Unmodified	_RPRPSSVL_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.274658203125	2	456.274701	910.534849	0.23701	0.00010814	-1.1483	-0.00052394	-0.91128	-0.00041579	456.27437111208155	21.006	1.7085	21.006	20.622	22.331	0					172	60	5	0	0	0	0.071344	5	2697	2652;2697;2746;2791;2882		68.081	17.226	1	8300400			39362	5969	22895	22896	47789;47790;47791;47792;47793	47790					0.07600313228522282
RPRPSSVL	8	Unmodified	_RPRPSSVL_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.274658203125	2	456.274701	910.534849	0.37166	0.00016958	-1.2307	-0.00056152	-0.859	-0.00039194	456.2743197125574	21.184	1.6588	21.074	20.753	22.412	-0.11003					162	59	5	0	0	0	0.071344	4	2768	2720;2768;2811;2857		68.081	17.226	1	10036000			39363	5969	22895	22896	47794;47795;47796;47797	47795					0.07600313228522282
RPRPSSVL	8	Unmodified	_RPRPSSVL_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.27435302734375	2	456.274701	910.534849	0.26443	0.00012065	-1.2543	-0.00057231	-0.98989	-0.00045166	456.2743236666495	21.154	2.0563	21.101	20.695	22.752	-0.052912					195	72	5	0	0	0	0.079438	6	2816	2681;2729;2772;2816;2860;2902		64.236	3.9185	1	8977900			39364	5969	22895	22896	47798;47799;47800;47801;47802;47803	47801					0.07600313228522282
RPRPSSVLRTL	11	Unmodified	_RPRPSSVLRTL_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.9300231933594	3	427.929844	1280.7677	0.061473	2.6306E-05	-0.28408	-0.00012157	-0.22261	-9.526E-05	427.92993222276846	31.982	2.7522	31.982	31.61	34.362	0					263	98	5	0	0	0	7.3346E-07	9	6114	5978;6021;6064;6114;6156;6206;6255;6302;6356		133.02	87.421	1	29532000			39365	5969	22896	22897	47804;47805;47806;47807;47808;47809;47810;47811;47812	47807					0.13854950228324014
RPRPSSVLRTL	11	Unmodified	_RPRPSSVLRTL_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.391357421875	2	641.391128	1280.7677	0.5147	0.00033012	-0.042494	-2.7255E-05	0.4722	0.00030287	641.3910723248549	31.96	1.0665	31.96	31.745	32.811	0					109	37	4	0	0	0	0.0005993	4	6057	6009;6057;6106;6168		111.31	71.07	1	2928500			39366	5969	22896	22897	47813;47814;47815;47816	47814					0.13854950228324014
RPRPSSVLRTL	11	Unmodified	_RPRPSSVLRTL_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.929931640625	3	427.929844	1280.7677	0.12819	5.4856E-05	-0.34848	-0.00014912	-0.22029	-9.4269E-05	427.9299063900264	31.893	2.5011	31.935	31.624	34.125	0.042366					252	89	5	0	0	0	1.0277E-05	8	6057	5965;6012;6057;6106;6154;6199;6246;6295		124.04	78.438	1	35794000			39367	5969	22896	22897	47817;47818;47819;47820;47821;47822;47823;47824	47819					0.13854950228324014
RPRPSSVLRTL	11	Unmodified	_RPRPSSVLRTL_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.3912963867188	2	641.391128	1280.7677	0.67468	0.00043274	-0.27014	-0.00017326	0.40455	0.00025947	641.3909447395916	31.867	0.95301	31.909	31.709	32.662	0.042364					105	33	4	0	0	0	0.00042144	4	6078	5982;6029;6078;6131		104.48	64.245	1	3162400			39368	5969	22896	22897	47825;47826;47827;47828	47827					0.13854950228324014
RPRPSSVLRTL	11	Unmodified	_RPRPSSVLRTL_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.93017578125	3	427.929844	1280.7677	-0.012999	-5.5628E-06	-0.27062	-0.00011581	-0.28362	-0.00012137	427.92999337614793	31.916	2.0999	31.957	31.559	33.659	0.040991					262	75	5	0	0	0	7.3346E-07	10	6092	5951;6000;6044;6092;6133;6183;6232;6285;6335;6351		133.02	90.161	1	26629000			39369	5969	22896	22897	47829;47830;47831;47832;47833;47834;47835;47836;47837;47838	47832					0.13854950228324014
RPRPSSVLRTL	11	Unmodified	_RPRPSSVLRTL_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.391357421875	2	641.391128	1280.7677	0.52455	0.00033644	-0.092198	-5.9135E-05	0.43235	0.00027731	641.391046775413	31.869	1.1064	31.91	31.672	32.778	0.040991					118	39	4	0	0	0	0.0005993	4	6045	5997;6045;6093;6147		101.54	60.469	1	2474500			39370	5969	22896	22897	47839;47840;47841;47842	47840					0.13854950228324014
RPRPSTDVRAL	11	Unmodified	_RPRPSTDVRAL_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.2457275390625	3	423.245832	1266.71567	-0.1584	-6.7041E-05	-0.4847	-0.00020515	-0.64309	-0.00027219	423.2457553143228	24.018	0.51281	24.018	23.8	24.312	0					49	17	4	0	0	0	0.32021	1	3651	3651		20.411	11.167	1	210960			39371	5349	22897	22898	47843	47843					0.09297786814590836
RPRPSTDVRAL	11	Unmodified	_RPRPSTDVRAL_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.245849609375	3	423.245832	1266.71567	-0.069432	-2.9387E-05	-0.1667	-7.0554E-05	-0.23613	-9.9941E-05	423.2457788115503	24.233	0.64891	24.16	23.821	24.47	-0.072559					47	21	3	0	0	0	0.40928	1	3706	3706		10.016	2.5392	1	219580			39372	5349	22897	22898	47844	47844					0.09297786814590836
RPRPSVYIP	9	Unmodified	_RPRPSVYIP_					0	0	0		ENSG00000105655|ENST00000338128|ISYNA1;nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF;nc|ENSG00000105655|Q9NPH2-3|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8167724609375	2	542.816733	1083.61891	0.59362	0.00032223	-0.81438	-0.00044206	-0.22076	-0.00011983	542.8164205532635	35.758	0.49275	35.758	35.52	36.012	0					35	17	3	0	0	0	0.18208	1	7210	7210		26.268	4.7312	1	326280			39373	2003	22898	22899	47845	47845					0.08044844325399936
RPRPSVYIP	9	Unmodified	_RPRPSVYIP_					0	0	0		ENSG00000105655|ENST00000338128|ISYNA1;nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF;nc|ENSG00000105655|Q9NPH2-3|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8165893554688	2	542.816733	1083.61891	0.60538	0.00032861	-0.55485	-0.00030118	0.050534	2.743E-05	542.8163817145862	35.577	0.43786	35.66	35.516	35.954	0.082355					26	15	2	0	0	0	0.18208	1	7157	7157		26.268	4.7312	1	288350			39374	2003	22898	22899	47846	47846					0.08044844325399936
RPRPSVYIP	9	Unmodified	_RPRPSVYIP_					0	0	0		ENSG00000105655|ENST00000338128|ISYNA1;nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF;nc|ENSG00000105655|Q9NPH2-3|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.304931640625	2	542.816733	1083.61891	0.43704	0.00023723	-0.29767	-0.00016158	0.13937	7.5654E-05	542.8166456799831	35.574	0.4976	35.66	35.537	36.034	0.08625					26	17	2	0	0	0	0.13748	1	7133	7133		32.786	11.249	1	335920			39375	2003	22898	22899	47847	47847					0.08044844325399936
RPRPTEATV	9	Unmodified	_RPRPTEATV_					0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7875366210938	2	513.788173	1025.56179	0.05135	2.6383E-05	-0.22489	-0.00011555	-0.17354	-8.9165E-05	513.788033274153	17.094	0.82308	16.977	16.692	17.515	-0.11739					78	29	3	0	0	0	0.11201	2	1493	1493;1582		36.506	10.238	1	1078500			39376	7188	22899	22900	47848;47849	47848					0.05003377049024493
RPRPTEATV	9	Unmodified	_RPRPTEATV_					0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7880249023438	2	513.788173	1025.56179	0.27482	0.0001412	-0.62096	-0.00031904	-0.34614	-0.00017784	513.7879239981598	17.009	1.0001	16.948	16.56	17.56	-0.060429					102	35	4	0	0	0	0.03069	2	1510	1466;1510		60.074	12.325	1	1167400			39377	7188	22899	22900	47850;47851	47851					0.05003377049024493
RPRPTEATV	9	Unmodified	_RPRPTEATV_					0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.788173	1025.56179	0.27897	0.00014333	-0.49133	-0.00025244	-0.21236	-0.00010911	513.7878924829022	16.952	0.96936	16.952	16.659	17.628	0	-0.0067052	-0.00013905	NaN	60.074	76	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1128800			39378	7188	22899	22900							0.05003377049024493
RPRPTEATVSL	11	Unmodified	_RPRPTEATVSL_					0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.8463745117188	2	613.846219	1225.67788	0.27459	0.00016856	-0.24196	-0.00014853	0.032632	2.0031E-05	613.8463411033656	30.589	0.72915	30.589	30.333	31.062	0					55	25	4	0	0	0	0.001645	2	5632	5587;5632		104.48	32.776	1	1707100			39379	7188	22900	22901	47852;47853	47853					0.07407275829086757
RPRPTEATVSL	11	Unmodified	_RPRPTEATVSL_					0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	613.8463745117188	2	613.846219	1225.67788	0.25748	0.00015806	-0.096185	-5.9043E-05	0.1613	9.9013E-05	613.8463356336468	30.564	0.78832	30.592	30.354	31.142	0.027946					58	27	4	0	0	0	0.0051853	2	5594	5594;5637		94.909	31.681	1	1690200			39380	7188	22900	22901	47854;47855	47854					0.07407275829086757
RPRPTEATVSL	11	Unmodified	_RPRPTEATVSL_					0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	613.8465576171875	2	613.846219	1225.67788	0.0065408	4.0151E-06	0.024654	1.5134E-05	0.031195	1.9149E-05	613.8464791833724	30.555	0.72143	30.582	30.335	31.056	0.027157					56	25	4	0	0	0	0.0069772	2	5636	5589;5636		81.915	30.5	1	1639100			39381	7188	22900	22901	47856;47857	47857					0.07407275829086757
RPRPTEATVSL	11	Unmodified	_RPRPTEATVSL_					0	0	0		ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	ENST00000587602.5_1_19:1073185-1086002:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.24725341796875	3	409.566571	1225.67788	-0.15576	-6.3794E-05	0.47187	0.00019326	0.31611	0.00012947	409.5671197484989	30.541	1.0388	30.568	30.281	31.32	0.027157					75	37	6	0	0	0	0.31969	1	5598	5598		23.016	1.2162	1	2723100			39382	7188	22900	22901	47858	47858					0.07407275829086757
RPRPTKTSF	9	Unmodified	_RPRPTKTSF_					0	0	0		ENSG00000100403|ENST00000352645|ZC3H7B	ENSG00000100403|ENST00000352645|ZC3H7B	ENSG00000100403|ENST00000352645|ZC3H7B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3124389648438	2	545.311815	1088.60908	0.38841	0.0002118	0.16163	8.814E-05	0.55004	0.00029994	545.3118717704809	15.776	0.99331	15.666	15.151	16.144	-0.10981					73	33	4	0	0	0	0.19083	1	1099	1099		24.991	0.97039	1	526870			39383	1590	22901	22902	47859	47859					0.06831656320036927
RPRPTKTSF	9	Unmodified	_RPRPTKTSF_					0	0	0		ENSG00000100403|ENST00000352645|ZC3H7B	ENSG00000100403|ENST00000352645|ZC3H7B	ENSG00000100403|ENST00000352645|ZC3H7B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.311767578125	2	545.311815	1088.60908	0.38018	0.00020731	0.094961	5.1783E-05	0.47514	0.0002591	545.3118267566344	15.715	0.90649	15.651	15.158	16.064	-0.064414					67	30	4	0	0	0	0.22215	1	1129	1129		20.415	1.1575	1	620570			39384	1590	22901	22902	47860	47860					0.06831656320036927
RPRPTTAPITI	11	Unmodified	_RPRPTTAPITI_					0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.3092651367188	2	611.866954	1221.71936	0.38632	0.00023638	0.3085	0.00018876	0.69482	0.00042514	611.8670466202427	35.725	0.4659	35.808	35.57	36.036	0.082355					26	16	2	0	0	0	0.33169	1	7215	7215		2.2828	2.2828	1	233570			39385	4099	22902	22903	47861	47861					0.11736456588414512
RPRPTTAPITI	11	Unmodified	_RPRPTTAPITI_					0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.3095092773438	2	611.866954	1221.71936	0.24005	0.00014688	0.30161	0.00018455	0.54166	0.00033142	611.8671036898331	35.68	0.41205	35.766	35.597	36.009	0.08625					26	14	3	0	0	0	0.3325	1	7203	7203		2.4985	0	1	205060			39386	4099	22902	22903	47862	47862					0.11736456588414512
RPRPTTAPITI	11	Unmodified	_RPRPTTAPITI_					0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	611.866954	1221.71936	0.41638	0.00025477	-0.038069	-2.3293E-05	0.37831	0.00023148	611.8667893259571	35.838	0.34419	35.838	35.693	36.037	0	0.033978	-0.00024863	NaN	2.2828	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223830			39387	4099	22902	22903							0.11736456588414512
RPRPVASISI	10	Unmodified	_RPRPVASISI_					0	0	0			REV__ENSG00000132026|ENST00000674343|RTBDN	REV__ENSG00000132026|ENST00000674343|RTBDN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7796630859375	2	548.33529	1094.65603	0.57888	0.00031742	-0.67258	-0.0003688	-0.093701	-5.1379E-05	548.3346249497718	37.099	0.68385	37.186	36.98	37.664	0.08741					53	24	3	0	0	0	0.31581	1	7681	7681		11.495	0	1	528280	+		39388	15549	22903	22904	47863	47863					0.11248515871170639
RPRPVNAKL	9	Unmodified	_RPRPVNAKL_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.830078125	2	525.830175	1049.6458	0.48476	0.0002549	-0.30666	-0.00016125	0.1781	9.3649E-05	525.8299751198689	17.07	0.52831	17.07	16.867	17.396	0					31	18	2	0	0	0	0.18803	1	1503	1503		25.399	11.891	1	141130			39389	5917	22904	22905	47864	47864					0.12295952936597132
RPRPVNAKL	9	Unmodified	_RPRPVNAKL_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8302612304688	2	525.830175	1049.6458	0.26538	0.00013955	-0.28353	-0.00014909	-0.018146	-9.5415E-06	525.8300342945657	17.223	0.55697	17.106	16.884	17.441	-0.11739					44	19	3	0	0	0	0.18803	1	1561	1561		25.399	9.5521	1	145710			39390	5917	22904	22905	47865	47865					0.12295952936597132
RPRPVNAKL	9	Unmodified	_RPRPVNAKL_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.829833984375	2	525.830175	1049.6458	0.5763	0.00030304	-0.6586	-0.00034631	-0.082299	-4.3275E-05	525.829795176686	17.131	0.49715	17.071	16.917	17.414	-0.060431					38	17	3	0	0	0	0.25314	1	1538	1538		15.847	4.2069	1	115050			39391	5917	22904	22905	47866	47866					0.12295952936597132
RPRPVNAKL	9	Unmodified	_RPRPVNAKL_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	525.830175	1049.6458	0.5763	0.00030304	-0.6586	-0.00034631	-0.082299	-4.3275E-05	525.829795176686	17.131	0.49715	17.071	16.917	17.414	-0.060431	-0.011588	-0.0002691	NaN	25.399	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115050			39392	5917	22904	22905							0.12295952936597132
RPRPVSLS	8	Unmodified	_RPRPVSLS_					0	0	0		nc|ENSG00000188176|Q2TAL5-2|SMTNL2;ENSG00000188176|ENST00000389313|SMTNL2	nc|ENSG00000188176|Q2TAL5-2|SMTNL2	nc|ENSG00000188176|Q2TAL5-2|SMTNL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.27435302734375	2	456.274701	910.534849	0.23701	0.00010814	-1.1483	-0.00052394	-0.91128	-0.00041579	456.27437111208155	21.006	1.7085	21.006	20.622	22.331	0					172	60	5	0	0	0	0.35947	1	2836	2836		24.021	0	1	8300400			39393	7735	22905	22906	47867	47867					0.07600313228522282
RPRPVSLS	8	Unmodified	_RPRPVSLS_					0	0	0		nc|ENSG00000188176|Q2TAL5-2|SMTNL2;ENSG00000188176|ENST00000389313|SMTNL2	nc|ENSG00000188176|Q2TAL5-2|SMTNL2	nc|ENSG00000188176|Q2TAL5-2|SMTNL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2745666503906	2	456.274701	910.534849	0.37166	0.00016958	-1.2307	-0.00056152	-0.859	-0.00039194	456.2743197125574	21.184	1.6588	21.074	20.753	22.412	-0.11003					162	59	5	0	0	0	0.43758	1	2958	2958		10.074	1.4806	1	10036000			39394	7735	22905	22906	47868	47868					0.07600313228522282
RPRPVSLS	8	Unmodified	_RPRPVSLS_					0	0	0		nc|ENSG00000188176|Q2TAL5-2|SMTNL2;ENSG00000188176|ENST00000389313|SMTNL2	nc|ENSG00000188176|Q2TAL5-2|SMTNL2	nc|ENSG00000188176|Q2TAL5-2|SMTNL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2745056152344	2	456.274701	910.534849	0.26443	0.00012065	-1.2543	-0.00057231	-0.98989	-0.00045166	456.2743236666495	21.154	2.0563	21.101	20.695	22.752	-0.052912					195	72	5	0	0	0	0.42371	1	2956	2956		14.838	2.3067	1	8977900			39395	7735	22905	22906	47869	47869					0.07600313228522282
RPRPWRGNTL	10	Unmodified	_RPRPWRGNTL_					0	0	0		ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5907287597656	3	418.2389	1251.69487	-0.056591	-2.3668E-05	-0.1272	-5.3199E-05	-0.18379	-7.6867E-05	418.23871198339583	24.558	1.152	24.525	24.141	25.293	-0.032566					116	39	4	0	0	0	0.31899	1	3703	3703		4.7159	4.7159	1	1018300			39396	1735	22906	22907	47870	47870					0.07909241225547703
RPRQNSLS	8	Unmodified	_RPRQNSLS_					0	0	0		ENST00000535682.1_17:73314626-73315194:-|nuORF	ENST00000535682.1_17:73314626-73315194:-|nuORF	ENST00000535682.1_17:73314626-73315194:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2648620605469	2	479.264865	956.515176	-0.14028	-6.7229E-05	0.11106	5.3226E-05	-0.029219	-1.4003E-05	479.2650175805244	14.108	0.56905	14.108	13.962	14.531	0					32	19	2	0	0	0	0.34408	1	645	645		2.3027	0.24298	1	148540			39397	11675	22907	22908	47871	47871					0.035179372177594814
RPRQPHAGL	9	Unmodified	_RPRQPHAGL_					0	0	0			REV__ENST00000255641.12_1_19:1980198-1980525:+|nuORF	REV__ENST00000255641.12_1_19:1980198-1980525:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2963256835938	2	516.296499	1030.57845	0.0076549	3.9522E-06	0.19044	9.8324E-05	0.1981	0.00010228	516.2965427250848	13.185	0.39937	13.185	13.058	13.457	0					29	13	3	0	0	0	0.29176	1	367	367		10.074	0.6908	1	214960	+		39398	19549	22908	22909	47872	47872					0.06437922725649514
RPRQPHAGL	9	Unmodified	_RPRQPHAGL_					0	0	0			REV__ENST00000255641.12_1_19:1980198-1980525:+|nuORF	REV__ENST00000255641.12_1_19:1980198-1980525:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.296875	2	516.296499	1030.57845	-0.072994	-3.7687E-05	0.40178	0.00020744	0.32878	0.00016975	516.2966831654323	13.278	0.4298	13.179	13.011	13.441	-0.099291					30	14	3	0	0	0	0.29176	1	387	387		10.074	0	1	206540	+		39399	19549	22908	22909	47873	47873					0.06437922725649514
RPRQPHAGL	9	Unmodified	_RPRQPHAGL_					0	0	0			REV__ENST00000255641.12_1_19:1980198-1980525:+|nuORF	REV__ENST00000255641.12_1_19:1980198-1980525:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2965698242188	2	516.296499	1030.57845	-0.16471	-8.5038E-05	0.23456	0.0001211	0.069853	3.6065E-05	516.2965374699069	13.258	0.39587	13.191	13.047	13.443	-0.067495					29	13	3	0	0	0	0.29176	1	369	369		10.074	0	1	154150	+		39400	19549	22908	22909	47874	47874					0.06437922725649514
RPRQPPRT	8	Unmodified	_RPRQPPRT_					0	0	0		ENST00000302754.5_1_19:12902350-12902593:+|nuORF	ENST00000302754.5_1_19:12902350-12902593:+|nuORF	ENST00000302754.5_1_19:12902350-12902593:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.29638671875	2	504.296499	1006.57845	-0.0073737	-3.7185E-06	-0.30942	-0.00015604	-0.31679	-0.00015976	504.2963969009363	13.444	0.90548	13.444	13.118	14.024	0					102	31	5	0	0	0	0.22	1	451	451		39.957	0	1	1927700			39401	9239	22909	22910	47875	47875					0.0754192272564751
RPRQPPRT	8	Unmodified	_RPRQPPRT_					0	0	0		ENST00000302754.5_1_19:12902350-12902593:+|nuORF	ENST00000302754.5_1_19:12902350-12902593:+|nuORF	ENST00000302754.5_1_19:12902350-12902593:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2965393066406	2	504.296499	1006.57845	-0.05656	-2.8523E-05	-0.2815	-0.00014196	-0.33806	-0.00017048	504.29641954307954	13.517	0.81678	13.45	13.189	14.005	-0.067496					90	28	4	0	0	0	0.16948	1	434	434		48.346	0	1	1767900			39402	9239	22909	22910	47876	47876					0.0754192272564751
RPRQQPRVAS	10	Unmodified	_RPRQQPRVAS_					0	0	0		ENST00000589791.5_1_19:2233841-2236647:-|nuORF;ENST00000589097.5_1_19:2236362-2236647:-|nuORF	ENST00000589791.5_1_19:2233841-2236647:-|nuORF	ENST00000589791.5_1_19:2233841-2236647:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8443603515625	2	597.844345	1193.67414	0.29146	0.00017425	0.14218	8.5001E-05	0.43364	0.00025925	597.8444444607018	17.757	0.95606	17.696	17.241	18.197	-0.060429					67	33	3	0	0	0	0.38284	1	1713	1713		6.6304	1.3335	1	114850			39403	12165	22910	22911	47877	47877					0.08504650845884498
RPRQQPRVAS	10	Unmodified	_RPRQQPRVAS_					0	0	0		ENST00000589791.5_1_19:2233841-2236647:-|nuORF;ENST00000589097.5_1_19:2236362-2236647:-|nuORF	ENST00000589791.5_1_19:2233841-2236647:-|nuORF	ENST00000589791.5_1_19:2233841-2236647:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	597.844345	1193.67414	0.30303	0.00018116	0.059426	3.5527E-05	0.36245	0.00021669	597.8443240336142	17.833	0.7793	17.716	17.259	18.038	-0.11739	0.062281	-1.4049E-06	NaN	6.6304	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128780			39404	12165	22910	22911							0.08504650845884498
RPRQRNEQPGL	11	Unmodified	_RPRQRNEQPGL_					0	0	0			REV__ENST00000532922.1_1_11:1594694-1618573:+|nuORF	REV__ENST00000532922.1_1_11:1594694-1618573:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.9162902832031	3	450.916486	1349.72763	-0.018406	-8.2998E-06	-0.33061	-0.00014908	-0.34902	-0.00015738	450.91628022718703	17.793	1.358	17.675	17.289	18.647	-0.11739					114	46	5	0	0	0	0.41892	1	1723	1723		8.7518	2.1283	1	774170	+		39405	22037	22911	22912	47878	47878					0.06675403557755999
RPRQVPGLR	9	Unmodified	_RPRQVPGLR_					0	0	0		ENST00000415993.5_1_22:50689477-50689669:-|nuORF;ENST00000497483.1_1_22:50689302-50689819:-|nuORF	ENST00000415993.5_1_22:50689477-50689669:-|nuORF	ENST00000415993.5_1_22:50689477-50689669:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2338256835938	2	539.833249	1077.65194	0.27184	0.00014675	-0.23566	-0.00012722	0.036182	1.9532E-05	539.833304949801	18.698	0.6722	18.581	18.358	19.03	-0.11739					43	23	3	0	0	0	0.25706	1	2001	2001		6.7232	0.51738	1	51035			39406	10315	22912	22913	47879	47879					0.1162247116810704
RPRRDGPGL	9	Unmodified	_RPRRDGPGL_					0	0	0		ENSG00000096717|ENST00000212015|SIRT1;SIRT1|p.D663Rfs*2|1|0.42|ENSG00000096717|chr10:67916333-67916334|-/A|frameshift_variant;nc|ENSG00000096717|Q96EB6-2|SIRT1	ENSG00000096717|ENST00000212015|SIRT1	ENSG00000096717|ENST00000212015|SIRT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2940063476562	2	512.293956	1022.57336	0.0164	8.4018E-06	0.30175	0.00015459	0.31815	0.00016299	512.2940470439141	14.564	0.52961	14.564	14.395	14.925	0					43	18	3	0	0	0	0.10059	1	770	770		38.176	16.639	1	172880			39407	1469	22913	22914	47880	47880					0.06297618863050047
RPRRDGPGL	9	Unmodified	_RPRRDGPGL_					0	0	0		ENSG00000096717|ENST00000212015|SIRT1;SIRT1|p.D663Rfs*2|1|0.42|ENSG00000096717|chr10:67916333-67916334|-/A|frameshift_variant;nc|ENSG00000096717|Q96EB6-2|SIRT1	ENSG00000096717|ENST00000212015|SIRT1	ENSG00000096717|ENST00000212015|SIRT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2939453125	2	512.293956	1022.57336	-0.0065959	-3.3791E-06	0.4414	0.00022612	0.4348	0.00022275	512.2941819264446	14.739	0.56756	14.634	14.368	14.935	-0.10466					44	19	4	0	0	0	0.19747	1	804	804		24.021	5.8742	1	204950			39408	1469	22913	22914	47881	47881					0.06297618863050047
RPRRDGPGL	9	Unmodified	_RPRRDGPGL_					0	0	0		ENSG00000096717|ENST00000212015|SIRT1;SIRT1|p.D663Rfs*2|1|0.42|ENSG00000096717|chr10:67916333-67916334|-/A|frameshift_variant;nc|ENSG00000096717|Q96EB6-2|SIRT1	ENSG00000096717|ENST00000212015|SIRT1	ENSG00000096717|ENST00000212015|SIRT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2939453125	2	512.293956	1022.57336	-0.08523	-4.3663E-05	0.48268	0.00024727	0.39745	0.00020361	512.2941960859082	14.751	0.63937	14.685	14.4	15.039	-0.066068					45	22	3	0	0	0	0.03069	1	816	816		60.074	20.124	1	174810			39409	1469	22913	22914	47882	47882					0.06297618863050047
RPRRDIGTIL	10	Unmodified	_RPRRDIGTIL_					0	0	0		nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN	nc|ENSG00000167470|Q504T8|MIDN	nc|ENSG00000167470|Q504T8|MIDN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.365966796875	2	598.864746	1195.71494	0.56973	0.00034119	-0.59371	-0.00035555	-0.023981	-1.4362E-05	598.8641838757845	30.15	0.76051	30.15	29.888	30.648	0					67	26	3	0	0	0	0.0012277	2	5466	5466;5515		117.76	21.65	1	836600			39410	6177	22914	22915	47883;47884	47883					0.12490992165544412
RPRRDIGTIL	10	Unmodified	_RPRRDIGTIL_					0	0	0		nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN	nc|ENSG00000167470|Q504T8|MIDN	nc|ENSG00000167470|Q504T8|MIDN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.8643798828125	2	598.864746	1195.71494	0.5663	0.00033913	-0.54241	-0.00032483	0.023891	1.4307E-05	598.864160562958	30.163	0.81975	30.191	29.901	30.721	0.027946					65	28	3	0	0	0	0.038178	2	5503	5459;5503		61.602	15.902	1	889480			39411	6177	22914	22915	47885;47886	47886					0.12490992165544412
RPRRDIGTIL	10	Unmodified	_RPRRDIGTIL_					0	0	0		nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN	nc|ENSG00000167470|Q504T8|MIDN	nc|ENSG00000167470|Q504T8|MIDN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.8645629882812	2	598.864746	1195.71494	0.083662	5.0102E-05	-0.0031595	-1.8921E-06	0.080503	4.821E-05	598.8644826525791	30.189	0.77039	30.216	29.987	30.758	0.027157					62	26	3	0	0	0	0.012782	1	5466	5466		79.596	25.764	1	759420			39412	6177	22914	22915	47887	47887					0.12490992165544412
RPRREEAGLG	10	Unmodified	_RPRREEAGLG_					0	0	0		ENST00000418115.5_1_3:49449256-49449346:-|nuORF	ENST00000418115.5_1_3:49449256-49449346:-|nuORF	ENST00000418115.5_1_3:49449256-49449346:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8150634765625	2	570.815253	1139.61595	0.49132	0.00028045	-0.49232	-0.00028102	-0.00099671	-5.6894E-07	570.8149796242553	21.548	0.43857	21.448	21.244	21.682	-0.10034					28	15	2	0	0	0	0.39009	1	2876	2876		5.2969	0	1	93805			39413	10346	22915	22916	47888	47888					0.051729692006119876
RPRREEVKL	9	Unmodified	_RPRREEVKL_					0	0	0		ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8573608398438	2	591.856921	1181.69929	0.26295	0.00015563	0.48012	0.00028416	0.74307	0.00043979	591.8572197735989	16.15	0.65581	16.15	15.918	16.574	0					51	22	3	0	0	0	0.12279	1	1241	1241		34.932	15.57	1	171620			39414	4550	22916	22917	47889	47889					0.11570705648477997
RPRREEVKL	9	Unmodified	_RPRREEVKL_					0	0	0		ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8574829101562	2	591.856921	1181.69929	0.19877	0.00011765	0.48059	0.00028444	0.67936	0.00040208	591.8572683358511	16.294	0.63911	16.18	15.921	16.56	-0.11434					46	21	3	0	0	0	0.15763	1	1289	1289		29.841	10.479	1	154000			39415	4550	22916	22917	47890	47890					0.11570705648477997
RPRREEVKL	9	Unmodified	_RPRREEVKL_					0	0	0		ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.8573608398438	2	591.856921	1181.69929	0.28184	0.00016681	0.39477	0.00023364	0.67661	0.00040046	591.8572327721286	16.201	0.63413	16.138	15.892	16.526	-0.062534					49	21	3	0	0	0	0.11201	1	1256	1256		36.506	11.515	1	162420			39416	4550	22916	22917	47891	47891					0.11570705648477997
RPRRGKPRNRR	11	Unmodified	_RPRRGKPRNRR_					0	0	0		ENST00000604760.1_1_15:67834762-67834924:-|nuORF	ENST00000604760.1_1_15:67834762-67834924:-|nuORF	ENST00000604760.1_1_15:67834762-67834924:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.6346130371094	3	483.634647	1447.88211	0.25429	0.00012299	-0.17252	-8.3437E-05	0.081774	3.9549E-05	483.6344803124783	90.476	1.8136	90.476	89.392	91.205	0					387	140	5	0	0	0	0.48486	2	24001	24001;24167		0.094841	0.094841	1	1826100			39417	12281	22917	22918	47892;47893	47892					0.17608697553623642
RPRRGKPRNRR	11	Unmodified	_RPRRGKPRNRR_					0	0	0		ENST00000604760.1_1_15:67834762-67834924:-|nuORF	ENST00000604760.1_1_15:67834762-67834924:-|nuORF	ENST00000604760.1_1_15:67834762-67834924:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.9690856933594	3	483.634647	1447.88211	0.1464	7.0805E-05	-0.052282	-2.5286E-05	0.094119	4.5519E-05	483.63454030773244	92.391	1.0646	92.391	92.273	93.338	0					264	86	5	0	0	0	0.48486	1	24781	24781		0.094841	0.094841	1	1436800			39418	12281	22917	22918	47894	47894					0.17608697553623642
RPRRGKPRNRR	11	Unmodified	_RPRRGKPRNRR_					0	0	0		ENST00000604760.1_1_15:67834762-67834924:-|nuORF	ENST00000604760.1_1_15:67834762-67834924:-|nuORF	ENST00000604760.1_1_15:67834762-67834924:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.63470458984375	3	483.634647	1447.88211	0.27566	0.00013332	-0.27346	-0.00013225	0.0022066	1.0672E-06	483.63442751807656	90.491	0.34901	90.582	90.503	90.852	0.090675					98	27	4	0	0	0	0.48486	1	24012	24012		0.094841	0.094841	1	1309200			39419	12281	22917	22918	47895	47895					0.17608697553623642
RPRRGKPRNRR	11	Unmodified	_RPRRGKPRNRR_					0	0	0		ENST00000604760.1_1_15:67834762-67834924:-|nuORF	ENST00000604760.1_1_15:67834762-67834924:-|nuORF	ENST00000604760.1_1_15:67834762-67834924:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.6346740722656	3	483.634647	1447.88211	0.2138	0.0001034	-0.041594	-2.0116E-05	0.17221	8.3285E-05	483.6345547624555	92.499	1.9314	92.588	92.23	94.162	0.089195					340	157	5	0	0	0	0.48486	3	24516	24516;24681;24841		0.094841	0.094841	1	2989500			39420	12281	22917	22918	47896;47897;47898	47896					0.17608697553623642
RPRRGKPRNRR	11	Unmodified	_RPRRGKPRNRR_					0	0	0		ENST00000604760.1_1_15:67834762-67834924:-|nuORF	ENST00000604760.1_1_15:67834762-67834924:-|nuORF	ENST00000604760.1_1_15:67834762-67834924:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	483.634647	1447.88211	0.27566	0.00013332	-0.27346	-0.00013225	0.0022066	1.0672E-06	483.63442751807656	90.491	0.34901	90.582	90.503	90.852	0.090675	0.05263	-9.6959E-05	NaN	0.094841	98	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1309200			39421	12281	22917	22918							0.17608697553623642
RPRRGLKRG	9	Unmodified	_RPRRGLKRG_					0	0	0			REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7930908203125	2	548.35214	1094.68973	0.70099	0.00038439	1.6205	0.0008886	2.3215	0.001273	548.3528150140331	54.409	0.52197	54.409	54.214	54.736	0					35	18	3	0	0	0	0.25202	1	12937	12937		10.824	0	1	307290	+		39422	19521	22918	22919	47899	47899					0.14616982153597746
RPRRGLKRG	9	Unmodified	_RPRRGLKRG_					0	0	0			REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.35214	1094.68973	0.76399	0.00041893	1.5684	0.00086006	2.3324	0.001279	548.3528926302596	54.363	0.47598	54.426	54.218	54.694	0.063206	0.0086571	-2.835E-05	NaN	10.824	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293510	+		39423	19521	22918	22919							0.14616982153597746
RPRRGPLQ	8	Unmodified	_RPRRGPLQ_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.7562561035156	2	490.299042	978.583531	0.010044	4.9248E-06	-0.35225	-0.00017271	-0.34221	-0.00016779	490.29885062340026	14.244	0.57601	14.244	13.847	14.423	0					22	19	2	0	0	0	0.34353	1	617	617		4.756	0	1	45360			39424	7783	22919	22920	47900	47900					0.09338226588272391
RPRRGPRG	8	Unmodified	_RPRRGPRG_					0	0	0		ENST00000373116.5_1_1:36929884-36929932:-|nuORF	ENST00000373116.5_1_1:36929884-36929932:-|nuORF	ENST00000373116.5_1_1:36929884-36929932:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.2834777832031	2	476.289008	950.563464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.194	1	12.097	11.597	12.597	-0.096607								0	0	0	0.37724	1	56	56		2.3027	0	1				39425	9861	22920	22921	47901	47901					0.08620475648331194
RPRRIDWMVPE	11	Unmodified	_RPRRIDWMVPE_					0	0	0		nc|ENSG00000135622|O95754-2|SEMA4F;ENSG00000135622|ENST00000357877|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.5943298339844	3	485.594355	1453.76124	0.13459	6.5355E-05	-0.266	-0.00012917	-0.13141	-6.3812E-05	485.5942773623856	24.014	1.0929	24.014	23.669	24.762	0					108	36	4	0	0	0	0.43198	1	3642	3642		7.0371	3.1912	1	548450			39426	3886	22921	22922	47902	47902					0.05250689005288223
RPRRIDWMVPE	11	Unmodified	_RPRRIDWMVPE_					0	0	0		nc|ENSG00000135622|O95754-2|SEMA4F;ENSG00000135622|ENST00000357877|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.59423828125	3	485.594355	1453.76124	0.24056	0.00011682	-0.41684	-0.00020242	-0.17628	-8.5601E-05	485.92849478073447	24.281	1.1732	24.209	23.728	24.901	-0.072559					123	39	5	0	0	0	0.44966	1	3742	3742		4.7159	0.30977	1	569220			39427	3886	22921	22922	47903	47903					0.05250689005288223
RPRRPPDV	8	Unmodified	_RPRRPPDV_					0	0	0		ENST00000422447.7_1_11:18416109-18418399:+|nuORF;ENST00000543445.5_1_11:18416109-18418418:+|nuORF	ENST00000422447.7_1_11:18416109-18418399:+|nuORF	ENST00000422447.7_1_11:18416109-18418399:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2667541503906	2	496.79105	991.567546	0.68493	0.00034027	1.2306	0.00061137	1.9156	0.00095164	496.7920996539767	37.704	0.44281	37.704	37.452	37.895	0					20	15	2	0	0	0	0.34218	1	7738	7738		9.3474	0	1	104760			39428	10380	22922	22923	47904	47904					0.07142520351362691
RPRRPPDV	8	Unmodified	_RPRRPPDV_					0	0	0		ENST00000422447.7_1_11:18416109-18418399:+|nuORF;ENST00000543445.5_1_11:18416109-18418418:+|nuORF	ENST00000422447.7_1_11:18416109-18418399:+|nuORF	ENST00000422447.7_1_11:18416109-18418399:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.2668762207031	2	496.79105	991.567546	0.45616	0.00022661	2.0674	0.0010271	2.5236	0.0012537	496.7922811384725	37.567	0.34734	37.655	37.498	37.845	0.08741					18	12	2	0	0	0	0.34218	1	7718	7718		9.3474	0	1	81067			39429	10380	22922	22923	47905	47905					0.07142520351362691
RPRRPPTVF	9	Unmodified	_RPRRPPTVF_					0	0	0		ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.335693359375	2	563.335624	1124.6567	0.24105	0.00013579	0.057883	3.2608E-05	0.29894	0.0001684	563.3355504972882	24.885	0.84209	24.885	24.486	25.328	0					63	28	3	0	0	0	0.30459	1	3880	3880		8.1555	1.4324	1	259520			39430	6139	22923	22924	47906	47906					0.09935355310881278
RPRRQGEVTVL	11	Unmodified	_RPRRQGEVTVL_					0	0	0		ENSG00000181826|ENST00000454158|RELL1	ENSG00000181826|ENST00000454158|RELL1	ENSG00000181826|ENST00000454158|RELL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.5934143066406	3	437.593232	1309.75787	-0.010468	-4.5806E-06	0.035286	1.5441E-05	0.024818	1.086E-05	437.59323081939465	22.177	0.66674	22.076	21.804	22.471	-0.10034					53	24	3	0	0	0	0.33025	1	3056	3056		9.2438	9.2438	1	284990			39431	7252	22924	22925	47907	47907					0.11537762222951642
RPRRRQRA	8	Unmodified	_RPRRRQRA_					0	0	0		ENST00000556478.2_1_14:51026917-51026947:+|nuORF	ENST00000556478.2_1_14:51026917-51026947:+|nuORF	ENST00000556478.2_1_14:51026917-51026947:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3413696289062	2	548.339564	1094.66457	0.33117	0.0001816	2.1712	0.0011905	2.5024	0.0013721	548.3407315976601	25.277	0.41175	25.277	25.064	25.475	0					29	13	3	0	0	0	0.44389	1	4012	4012		7.9102	0	1	96887			39432	11859	22925	22926	47908	47908					0.12102927351043036
RPRRRQRA	8	Unmodified	_RPRRRQRA_					0	0	0		ENST00000556478.2_1_14:51026917-51026947:+|nuORF	ENST00000556478.2_1_14:51026917-51026947:+|nuORF	ENST00000556478.2_1_14:51026917-51026947:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.339564	1094.66457	0.27208	0.00014919	2.7124	0.0014873	2.9844	0.0016365	548.3408691613223	25.332	0.46416	25.276	25.074	25.539	-0.055931	-0.022269	8.4952E-05	NaN	7.9102	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84471			39433	11859	22925	22926							0.12102927351043036
RPRRRQRA	8	Unmodified	_RPRRRQRA_					0	0	0		ENST00000556478.2_1_14:51026917-51026947:+|nuORF	ENST00000556478.2_1_14:51026917-51026947:+|nuORF	ENST00000556478.2_1_14:51026917-51026947:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	548.339564	1094.66457	0.11204	6.1438E-05	2.7693	0.0015185	2.8814	0.00158	548.341067097164	25.373	0.47143	25.342	25.098	25.57	-0.031408	0.043784	0.00014741	NaN	7.9102	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84801			39434	11859	22925	22926							0.12102927351043036
RPRRRRRRRQE	11	Unmodified	_RPRRRRRRRQE_					0	0	0		ENST00000514738.5_1_5:31193871-31267519:+|nuORF	ENST00000514738.5_1_5:31193871-31267519:+|nuORF	ENST00000514738.5_1_5:31193871-31267519:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2742919921875	3	541.331739	1620.97339	0.29815	0.0001614	2.3641	0.0012798	2.6623	0.0014412	541.6675613531576	16.842	0.32545	16.728	16.586	16.912	-0.11434					19	11	2	0	0	0	0.33352	1	1484	1484		0	0	1	86167			39435	11418	22926	22927	47909	47909					0.18773961250963112
RPRRRRRRWKG	11	Unmodified	_RPRRRRRRWKG_					0	0	0			REV__ENST00000453677.1_1_7:104654330-104654752:-|nuORF	REV__ENST00000453677.1_1_7:104654330-104654752:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.6635131835938	3	527.329558	1578.96685	0.2225	0.00011733	-0.40855	-0.00021544	-0.18605	-9.8112E-05	527.3296368935127	101.26	0.50892	101.29	101.09	101.6	0.027214					127	65	3	0	0	0	0.48558	1	26996	26996		0	0	1	221430	+		39436	21142	22927	22928	47910	47910					0.2005206809021729
RPRRTDLTVL	10	Unmodified	_RPRRTDLTVL_					0	0	0		ENST00000592597.1_1_19:1093873-1095344:-|nuORF;ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5824279785156	3	409.582444	1225.7255	-0.025772	-1.0556E-05	-0.061244	-2.5084E-05	-0.087015	-3.564E-05	409.5823925690596	28.839	1.1632	28.839	28.496	29.659	0					99	41	4	0	0	0	0.076018	3	5101	5056;5101;5152		53.317	22.613	1	1199800			39437	1496	22928	22929	47911;47912;47913	47912					0.12166974819933785
RPRRTDLTVL	10	Unmodified	_RPRRTDLTVL_					0	0	0		ENST00000592597.1_1_19:1093873-1095344:-|nuORF;ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.58233642578125	3	409.582444	1225.7255	0.04638	1.8997E-05	-0.080458	-3.2954E-05	-0.034078	-1.3958E-05	409.5823752302767	28.838	1.1609	28.833	28.542	29.703	-0.0042572					92	39	4	0	0	0	0.092344	3	5070	5070;5121;5173		49.742	14.13	1	1204300			39438	1496	22928	22929	47914;47915;47916	47914					0.12166974819933785
RPRRTDLTVL	10	Unmodified	_RPRRTDLTVL_					0	0	0		ENST00000592597.1_1_19:1093873-1095344:-|nuORF;ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.582275390625	3	409.582444	1225.7255	-0.089335	-3.659E-05	0.093745	3.8396E-05	0.0044096	1.8061E-06	409.582416329576	28.879	1.182	28.881	28.552	29.734	0.0020962					112	41	4	0	0	0	0.1693	3	5058	5058;5110;5162		36.395	12.594	1	1300500			39439	1496	22928	22929	47917;47918;47919	47917					0.12166974819933785
RPRRTILEVL	10	Unmodified	_RPRRTILEVL_					0	0	0		nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.26629638671875	3	418.266456	1251.77754	-0.24467	-0.00010234	0.08438	3.5293E-05	-0.16029	-6.7044E-05	418.2664265586761	41.138	0.64892	41.138	40.822	41.471	0					68	23	4	0	0	0	0.29148	1	8856	8856		17.049	8.6043	1	1390400			39440	7756	22929	22930	47920	47920					0.16172138233719124
RPRRTILEVL	10	Unmodified	_RPRRTILEVL_					0	0	0		nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.2662658691406	3	418.266456	1251.77754	0.20195	8.447E-05	-0.39711	-0.0001661	-0.19515	-8.1626E-05	418.26624942409455	40.896	0.76406	40.989	40.667	41.431	0.09267					71	28	3	0	0	0	0.30815	1	8742	8742		21.799	8.9269	1	1615000			39441	7756	22929	22930	47921	47921					0.16172138233719124
RPRSAVEQL	9	Unmodified	_RPRSAVEQL_					0	0	0		nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3015747070312	2	528.301447	1054.58834	0.43451	0.00022955	0.60434	0.00031927	1.0389	0.00054883	528.3014375210148	22.008	1.2475	22.008	21.627	22.875	0					117	44	5	0	0	0	0.026579	2	2986	2986;3032		61.602	11.669	1	3639300			39442	671	22930	22931	47922;47923	47922					0.06323065940387096
RPRSAVEQL	9	Unmodified	_RPRSAVEQL_					0	0	0		nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3016357421875	2	528.301447	1054.58834	0.40233	0.00021255	0.52595	0.00027786	0.92828	0.00049041	528.3014352768681	22.058	1.4298	21.958	21.635	23.064	-0.10034					132	51	5	0	0	0	0.010888	2	3054	3007;3054		78.06	19.382	1	4224300			39443	671	22930	22931	47924;47925	47925					0.06323065940387096
RPRSAVEQL	9	Unmodified	_RPRSAVEQL_					0	0	0		nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.301513671875	2	528.301447	1054.58834	0.36103	0.00019074	0.4318	0.00022812	0.79283	0.00041885	528.301465232055	22.011	1.3129	21.962	21.633	22.946	-0.049376					128	46	5	0	0	0	0.0073901	2	3033	2985;3033		83.429	15.409	1	4027100			39444	671	22930	22931	47926;47927	47927					0.06323065940387096
RPRSEETL	8	Unmodified	_RPRSEETL_					0	0	0		ENST00000474828.1_1_12:46355467-46384201:-|nuORF	ENST00000474828.1_1_12:46355467-46384201:-|nuORF	ENST00000474828.1_1_12:46355467-46384201:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2644958496094	2	494.26453	986.514508	0.030444	1.5047E-05	-0.14395	-7.1149E-05	-0.11351	-5.6102E-05	494.2644661098889	13.623	0.43097	13.523	13.337	13.768	-0.099291					23	15	2	0	0	0	0.44734	1	489	489		6.7232	1.8262	1	90436			39445	10927	22931	22932	47928	47928					0.020710977780595385
RPRSEETL	8	Unmodified	_RPRSEETL_					0	0	0		ENST00000474828.1_1_12:46355467-46384201:-|nuORF	ENST00000474828.1_1_12:46355467-46384201:-|nuORF	ENST00000474828.1_1_12:46355467-46384201:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2642822265625	2	494.26453	986.514508	-0.017862	-8.8283E-06	-0.13029	-6.4396E-05	-0.14815	-7.3224E-05	494.26446534499604	13.662	0.38499	13.595	13.388	13.773	-0.067115					20	13	2	0	0	0	0.31518	1	488	488		29.082	0.58707	1	87854			39446	10927	22931	22932	47929	47929					0.020710977780595385
RPRSKERAV	9	Unmodified	_RPRSKERAV_					0	0	0		ENSG00000215305|ENST00000380445|VPS16;nc|ENSG00000215305|Q9H269-2|VPS16	ENSG00000215305|ENST00000380445|VPS16	ENSG00000215305|ENST00000380445|VPS16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.827880859375	2	549.828163	1097.64177	0.041852	2.3012E-05	-0.20994	-0.00011543	-0.16809	-9.2419E-05	549.8281105266797	12.127	0.25494	12.127	12.018	12.273	0					26	11	3	0	0	0	0.22935	1	25	25		19.362	1.9193	1	183600			39447	8406	22932	22933	47930	47930					0.09685863442905429
RPRSKERAV	9	Unmodified	_RPRSKERAV_					0	0	0		ENSG00000215305|ENST00000380445|VPS16;nc|ENSG00000215305|Q9H269-2|VPS16	ENSG00000215305|ENST00000380445|VPS16	ENSG00000215305|ENST00000380445|VPS16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.828125	2	549.828163	1097.64177	0.19751	0.0001086	0.0032624	1.7938E-06	0.20078	0.00011039	549.8280891352379	12.124	0.42629	12.027	11.929	12.356	-0.096607					32	16	3	0	0	0	0.25714	1	33	33		15.248	3.0078	1	174260			39448	8406	22932	22933	47931	47931					0.09685863442905429
RPRSKERAV	9	Unmodified	_RPRSKERAV_					0	0	0		ENSG00000215305|ENST00000380445|VPS16;nc|ENSG00000215305|Q9H269-2|VPS16	ENSG00000215305|ENST00000380445|VPS16	ENSG00000215305|ENST00000380445|VPS16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.8281860351562	2	549.828163	1097.64177	-0.0018803	-1.0338E-06	0.022814	1.2544E-05	0.020934	1.151E-05	549.8281470507725	12.111	0.27519	12.043	11.951	12.226	-0.06806					25	12	3	0	0	0	0.22935	1	29	29		19.362	3.2128	1	170420			39449	8406	22932	22933	47932	47932					0.09685863442905429
RPRSPNDL	8	Unmodified	_RPRSPNDL_					0	0	0		ENSG00000130508|ENST00000252804|PXDN;ENST00000478155.5_1_2:1648438-1667521:-|nuORF;nc|ENSG00000130508|Q92626-2|PXDN	ENSG00000130508|ENST00000252804|PXDN	ENSG00000130508|ENST00000252804|PXDN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.759765625	2	477.759415	953.504277	-0.016601	-7.9312E-06	0.77878	0.00037207	0.76218	0.00036414	477.7598449140598	15.974	0.5627	15.974	15.842	16.405	0					28	19	2	0	0	0	0.3433	1	1208	1208		6.2058	0	1	95290			39450	3479	22933	22934	47933	47933					0.02566534843469981
RPRSQLMLT	9	Unmodified	_RPRSQLMLT_					0	0	0		KANSL1|p.N521Tfs*57|1|0.24|ENSG00000120071|chr17:46067639-46067639|T/-|frameshift_variant;KANSL1|p.G528Vfs*50|1|0.2|ENSG00000120071|chr17:46067618-46067618|C/-|frameshift_variant;KANSL1|p.E647Mfs*20|1|0.38|ENSG00000120071|chr17:46050606-46050615|GTGAATTTCG/-|frameshift_variant;ENSG00000120071|ENST00000432791|KANSL1	KANSL1|p.N521Tfs*57|1|0.24|ENSG00000120071|chr17:46067639-46067639|T/-|frameshift_variant	KANSL1|p.N521Tfs*57|1|0.24|ENSG00000120071|chr17:46067639-46067639|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.3139038085938	2	551.3135	1100.61245	0.072617	4.0035E-05	0.28288	0.00015596	0.3555	0.00019599	551.3136911087428	28.305	0.69863	28.305	27.963	28.661	0.00046921					50	24	3	0	0	0	0.3208	1	4969	4969		5.7319	0	1	232850			39451	2927	22934	22935	47934	47934					0.06616583102390905
RPRSQYNTK	9	Unmodified	_RPRSQYNTK_					0	0	0		SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant;ENSG00000196935|ENST00000355086|SRGAP1	SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant	SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7329711914062	2	575.309803	1148.60505	-0.094565	-5.4404E-05	-1.2172	-0.00070029	-1.3118	-0.0007547	575.3090300138326	14.052	0.34672	14.052	13.902	14.249	0					20	11	2	0	0	0	0.25706	1	613	613		6.7232	1.4925	1	91999			39452	7914	22935	22936	47935	47935					0.036695668263291736
RPRSQYNTK	9	Unmodified	_RPRSQYNTK_					0	0	0		SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant;ENSG00000196935|ENST00000355086|SRGAP1	SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant	SRGAP1|p.Q812Kfs*22|1|0.18|ENSG00000196935|chr12:64127617-64127617|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	575.309803	1148.60505	0.0022279	1.2817E-06	-1.1458	-0.0006592	-1.1436	-0.00065792	575.3089451637104	14.113	0.36536	14.008	13.873	14.238	-0.10466	-0.029687	5.3657E-05	NaN	6.7232	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85402			39453	7914	22935	22936							0.036695668263291736
RPRSRAPAP	9	Unmodified	_RPRSRAPAP_					0	0	0		ENST00000378163.5_1_X:41782342-41782579:-|nuORF	ENST00000378163.5_1_X:41782342-41782579:-|nuORF	ENST00000378163.5_1_X:41782342-41782579:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2966003417969	2	504.296499	1006.57845	-0.0073737	-3.7185E-06	-0.30942	-0.00015604	-0.31679	-0.00015976	504.2963969009363	13.444	0.90548	13.444	13.118	14.024	0					102	31	5	0	0	0	0.041175	1	408	408		56.177	0	1	1927700			39454	9951	22936	22937	47936	47936					0.0754192272564751
RPRSRAPAP	9	Unmodified	_RPRSRAPAP_					0	0	0		ENST00000378163.5_1_X:41782342-41782579:-|nuORF	ENST00000378163.5_1_X:41782342-41782579:-|nuORF	ENST00000378163.5_1_X:41782342-41782579:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2967529296875	2	504.296499	1006.57845	-0.050322	-2.5377E-05	-0.27188	-0.00013711	-0.3222	-0.00016249	504.2964130146864	13.52	0.83625	13.42	13.16	13.997	-0.099291					91	29	4	0	0	0	0.041175	2	431	431;478		56.177	0	1	1860300			39455	9951	22936	22937	47937;47938	47937					0.0754192272564751
RPRSRCLQ	8	Unmodified	_RPRSRCLQ_					0	0	0		ENST00000564364.5_1_16:86588332-86588679:-|nuORF	ENST00000564364.5_1_16:86588332-86588679:-|nuORF	ENST00000564364.5_1_16:86588332-86588679:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7793884277344	2	508.282534	1014.55052	0.28395	0.00014433	-3.5064	-0.0017823	-3.2225	-0.0016379	508.2823077350554	30.823	1.3589	30.823	30.194	31.553	0					112	48	3	0	0	0	0.4419	1	5770	5770		8.5933	0	1	526740			39456	11948	22937	22938	47939	47939					0.04382276473904767
RPRSRRGRHA	10	Unmodified	_RPRSRRGRHA_					0	0	0		nc|ENSG00000130307|Q8N6Y0-2|USHBP1;ENSG00000130307|ENST00000252597|USHBP1	nc|ENSG00000130307|Q8N6Y0-2|USHBP1	nc|ENSG00000130307|Q8N6Y0-2|USHBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9134521484375	3	416.91341	1247.7184	0.46661	0.00019453	0.064842	2.7033E-05	0.53145	0.00022157	416.9133734557238	20.919	0.96698	20.809	20.581	21.548	-0.11003					59	33	2	0	0	0	0.40567	1	2705	2705		2.4348	0	1	139940			39457	3466	22938	22939	47940	47940					0.10445099782737088
RPRSSHPRL	9	Unmodified	_RPRSSHPRL_					0	0	0		ENST00000456883.6_3_12:133405053-133405404:-|nuORF	ENST00000456883.6_3_12:133405053-133405404:-|nuORF	ENST00000456883.6_3_12:133405053-133405404:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3204956054688	2	553.320506	1104.62646	0.011095	6.139E-06	0.12354	6.836E-05	0.13464	7.4499E-05	553.3206497941509	13.381	0.28333	13.381	13.254	13.537	0					20	9	3	0	0	0	0.25112	1	421	421		16.149	2.2431	1	143610			39458	10700	22939	22940	47941	47941					0.07832996645720414
RPRSSHPRL	9	Unmodified	_RPRSSHPRL_					0	0	0		ENST00000456883.6_3_12:133405053-133405404:-|nuORF	ENST00000456883.6_3_12:133405053-133405404:-|nuORF	ENST00000456883.6_3_12:133405053-133405404:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3204345703125	2	553.320506	1104.62646	-0.069918	-3.8687E-05	0.16155	8.9387E-05	0.091629	5.07E-05	553.3207768607631	13.465	0.27347	13.398	13.275	13.549	-0.067496					17	9	2	0	0	0	0.21447	1	438	438		21.537	2.28	1	141800			39459	10700	22939	22940	47942	47942					0.07832996645720414
RPRSSHRYFL	10	Unmodified	_RPRSSHRYFL_					0	0	0		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.24237060546875	3	440.242422	1317.70544	-0.078837	-3.4708E-05	0.33209	0.0001462	0.25325	0.00011149	440.242355888954	22.587	1.1964	22.587	22.252	23.448	0					157	41	6	0	0	0	0.31709	2	3200	3200;3242		18.34	11.238	1	545440			39460	1932	22940	22941	47943;47944	47943					0.0592922388000261
RPRSSHRYFL	10	Unmodified	_RPRSSHRYFL_					0	0	0		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2423095703125	3	440.242422	1317.70544	-0.10389	-4.5736E-05	0.24709	0.00010878	0.1432	6.3043E-05	440.24238527351145	22.723	1.5222	22.635	22.191	23.713	-0.087608					167	54	5	0	0	0	0.35238	3	3198	3198;3249;3298		12.228	8.0381	1	452660			39461	1932	22940	22941	47945;47946;47947	47945					0.0592922388000261
RPRSSHRYFL	10	Unmodified	_RPRSSHRYFL_					0	0	0		ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	ENSG00000104889|ENST00000221486|RNASEH2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.2422790527344	3	440.242422	1317.70544	0.038151	1.6796E-05	0.11744	5.1704E-05	0.1556	6.85E-05	440.2422879693581	22.9	1.6662	22.855	22.347	24.014	-0.044867					191	58	5	0	0	0	0.36279	1	3288	3288		10.315	1.8709	1	491850			39462	1932	22940	22941	47948	47948					0.0592922388000261
RPRSSNAETL	10	Unmodified	_RPRSSNAETL_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7994995117188	2	565.799269	1129.58398	-0.027863	-1.5765E-05	0.40166	0.00022726	0.37379	0.00021149	565.7994492618736	15.016	0.97223	15.016	14.819	15.791	0					68	33	4	0	0	0	0.34053	1	878	878		14.405	1.5328	1	682730			39463	3567	22941	22942	47949	47949					0.024375567267952647
RPRSSNAETL	10	Unmodified	_RPRSSNAETL_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.7994384765625	2	565.799269	1129.58398	0.16195	9.1634E-05	0.16388	9.2723E-05	0.32583	0.00018436	565.79930070849	15.123	0.93167	15.013	14.765	15.696	-0.10981					64	32	3	0	0	0	0.28174	2	964	914;964		22.658	7.8198	1	596670			39464	3567	22941	22942	47950;47951	47951					0.024375567267952647
RPRSSNAETL	10	Unmodified	_RPRSSNAETL_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7992553710938	2	565.799269	1129.58398	-0.029111	-1.6471E-05	0.28871	0.00016335	0.2596	0.00014688	565.7993715801165	15.16	1.0159	15.096	14.82	15.836	-0.064414					69	34	4	0	0	0	0.040516	1	935	935		61.09	33.867	1	708200			39465	3567	22941	22942	47952	47952					0.024375567267952647
RPRSSNAETL	10	Unmodified	_RPRSSNAETL_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	565.799269	1129.58398	-0.027863	-1.5765E-05	0.40166	0.00022726	0.37379	0.00021149	565.7994492618736	15.016	0.97223	15.016	14.819	15.791	0	-0.025734	0.00011311	NaN	61.09	68	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	682730			39466	3567	22941	22942							0.024375567267952647
RPRSSTDALI	10	Unmodified	_RPRSSTDALI_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.N2925Kfs*3|1|0.27|ENSG00000103657|chr15:63663110-63663111|-/TT|frameshift_variant;ENST00000559886.1_1_15:64045105-64067822:-|nuORF	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3121948242188	2	558.312012	1114.60947	0.22965	0.00012822	0.19376	0.00010818	0.42341	0.00023639	558.3119884039193	25.15	0.74847	25.15	24.843	25.591	0					58	25	3	0	0	0	0.324	1	3940	3940		17.443	1.5955	1	245580			39467	1848	22942	22943	47953	47953					0.05675031249234053
RPRSSTDALI	10	Unmodified	_RPRSSTDALI_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.N2925Kfs*3|1|0.27|ENSG00000103657|chr15:63663110-63663111|-/TT|frameshift_variant;ENST00000559886.1_1_15:64045105-64067822:-|nuORF	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3121337890625	2	558.312012	1114.60947	0.1283	7.1631E-05	0.29472	0.00016454	0.42301	0.00023617	558.3120949220963	25.216	0.70238	25.16	24.918	25.62	-0.055931					54	24	3	0	0	0	0.29048	1	3973	3973		21.59	5.743	1	298370			39468	1848	22942	22943	47954	47954					0.05675031249234053
RPRSSVTPL	9	Unmodified	_RPRSSVTPL_					0	0	0			REV__ENSG00000176399|ENST00000325870|DMRTA1	REV__ENSG00000176399|ENST00000325870|DMRTA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.31884765625	2	506.79854	1011.58253	0.087595	4.4393E-05	-0.63	-0.00031928	-0.54241	-0.00027489	506.7980862667201	28.307	0.43268	28.303	28.167	28.599	-0.0042572					18	15	2	0	0	0	0.23784	1	4898	4898		19.257	7.6167	1	115150	+		39469	17934	22943	22944	47955	47955					0.0771996742871579
RPRTEVSL	8	Unmodified	_RPRTEVSL_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.27734375	2	479.277441	956.540328	-0.028336	-1.3581E-05	0.15015	7.1964E-05	0.12181	5.8383E-05	479.2774298233509	23.284	0.73789	23.284	22.996	23.734	0					58	25	3	0	0	0	0.31518	1	3382	3382		29.082	0	1	606260			39470	7218	22944	22945	47956	47956					0.06031992020336929
RPRTEVSL	8	Unmodified	_RPRTEVSL_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2773742675781	2	479.277441	956.540328	0.26501	0.00012701	-0.26873	-0.0001288	-0.0037262	-1.7859E-06	479.27720587740777	23.394	0.72764	23.349	23.06	23.787	-0.044867					64	25	4	0	0	0	0.37071	1	3476	3476		22.736	2.2827	1	578500			39471	7218	22944	22945	47957	47957					0.06031992020336929
RPRTFFSW	8	Unmodified	_RPRTFFSW_					0	0	0		ENST00000459905.5_1_9:139835382-139837220:-|nuORF;ENST00000483559.5_1_9:139835382-139837095:-|nuORF;ENSG00000159069|ENST00000325285|FBXW5	ENST00000459905.5_1_9:139835382-139837220:-|nuORF	ENST00000459905.5_1_9:139835382-139837220:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7876586914062	2	548.787976	1095.5614	0.11034	6.0555E-05	-0.9037	-0.00049594	-0.79335	-0.00043538	548.7876620701318	14.639	0.34027	14.639	14.505	14.845	0					27	11	3	0	0	0	0.43758	1	797	797		10.074	1.0977	1	430050			39472	5385	22945	22946	47958	47958					0.017440021198581235
RPRTFFSW	8	Unmodified	_RPRTFFSW_					0	0	0		ENST00000459905.5_1_9:139835382-139837220:-|nuORF;ENST00000483559.5_1_9:139835382-139837095:-|nuORF;ENSG00000159069|ENST00000325285|FBXW5	ENST00000459905.5_1_9:139835382-139837220:-|nuORF	ENST00000459905.5_1_9:139835382-139837220:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7877197265625	2	548.787976	1095.5614	0.12064	6.6208E-05	-1.1656	-0.00063967	-1.045	-0.00057346	548.7874387567562	15.011	0.56313	15.011	14.819	15.382	0					41	19	3	0	0	0	0.43758	1	911	911		10.074	1.3285	1	263910			39473	5385	22945	22946	47959	47959					0.017440021198581235
RPRTFFSW	8	Unmodified	_RPRTFFSW_					0	0	0		ENST00000459905.5_1_9:139835382-139837220:-|nuORF;ENST00000483559.5_1_9:139835382-139837095:-|nuORF;ENSG00000159069|ENST00000325285|FBXW5	ENST00000459905.5_1_9:139835382-139837220:-|nuORF	ENST00000459905.5_1_9:139835382-139837220:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7875366210938	2	548.787976	1095.5614	0.28226	0.0001549	-0.97525	-0.00053521	-0.69298	-0.0003803	548.7873531324465	15.124	0.5323	15.014	14.847	15.38	-0.10981					34	18	2	0	0	0	0.43758	1	943	943		10.074	1.3285	1	235260			39474	5385	22945	22946	47960	47960					0.017440021198581235
RPRTPLSLS	9	Unmodified	_RPRTPLSLS_					0	0	0		ENST00000564747.1_1_16:27473425-27473950:-|nuORF	ENST00000564747.1_1_16:27473425-27473950:-|nuORF	ENST00000564747.1_1_16:27473425-27473950:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7879638671875	2	513.806365	1025.59818	0.27741	0.00014253	-1.1256	-0.00057832	-0.84816	-0.00043579	513.8058935322297	16.948	0.31199	16.948	16.81	17.122	0					19	10	2	0	0	0	0.25066	1	1456	1456		7.2892	0	1	67321			39475	11955	22946	22947	47961	47961					0.08640253945782206
RPRTPLSLS	9	Unmodified	_RPRTPLSLS_					0	0	0		ENST00000564747.1_1_16:27473425-27473950:-|nuORF	ENST00000564747.1_1_16:27473425-27473950:-|nuORF	ENST00000564747.1_1_16:27473425-27473950:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7880249023438	2	513.806365	1025.59818	0.050352	2.5871E-05	-0.95977	-0.00049314	-0.90942	-0.00046726	513.8060321379791	17.059	0.51272	16.942	16.746	17.259	-0.11739					32	18	3	0	0	0	0.24581	1	1539	1539		16.942	0	1	64557			39476	11955	22946	22947	47962	47962					0.08640253945782206
RPRTPLSLS	9	Unmodified	_RPRTPLSLS_					0	0	0		ENST00000564747.1_1_16:27473425-27473950:-|nuORF	ENST00000564747.1_1_16:27473425-27473950:-|nuORF	ENST00000564747.1_1_16:27473425-27473950:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7882080078125	2	513.806365	1025.59818	0.27654	0.00014209	-0.79347	-0.00040769	-0.51693	-0.0002656	513.8059798503208	16.987	0.56676	16.927	16.731	17.298	-0.060429					26	20	2	0	0	0	0.31038	1	1552	1552		7.2892	0	1	79876			39477	11955	22946	22947	47963	47963					0.08640253945782206
RPRTPLTRV	9	Unmodified	_RPRTPLTRV_					0	0	0			REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	REV__nc|ENSG00000084693|Q8NDL9-2|AGBL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.758544921875	2	548.340907	1094.66726	0.22974	0.00012597	1.3939	0.00076435	1.6237	0.00089033	548.8433201453336	23.403	0.14357	23.403	23.336	23.48	0					5	4	2	0	0	0	0.26188	1	3422	3422		0.40072	0	1	53720	+		39478	13952	22947	22948	47964	47964					0.12371337965328166
RPRTPPEAIAL	11	Unmodified	_RPRTPPEAIAL_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.8590087890625	2	610.859129	1219.70371	0.23974	0.00014645	-0.97385	-0.00059488	-0.73411	-0.00044844	610.8585135574518	38.257	0.3999	38.257	38.034	38.434	0					36	13	3	0	0	0	0.1269	1	7980	7980		37.771	24.156	1	433580			39479	1208	22948	22949	47965	47965					0.10264170071377521
RPRTPPEAIAL	11	Unmodified	_RPRTPPEAIAL_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.2561645507812	2	610.859129	1219.70371	0.39391	0.00024063	-0.90411	-0.00055228	-0.5102	-0.00031166	610.8585507308867	38.219	0.44413	38.31	38.011	38.455	0.090881					40	15	3	0	0	0	0.26027	1	7912	7912		32.898	11.308	1	421190			39480	1208	22948	22949	47966	47966					0.10264170071377521
RPRTPPEAIAL	11	Unmodified	_RPRTPPEAIAL_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.8590087890625	2	610.859129	1219.70371	0.23485	0.00014346	-0.61013	-0.0003727	-0.37528	-0.00022924	610.8587014416839	38.193	0.48395	38.291	37.981	38.465	0.097527					39	16	3	0	0	0	0.11084	1	7918	7918		39.213	20.84	1	434710			39481	1208	22948	22949	47967	47967					0.10264170071377521
RPRTPPLI	8	Unmodified	_RPRTPPLI_					0	0	0		ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.3008728027344	2	475.300719	948.586885	0.094675	4.4999E-05	0.18695	8.8855E-05	0.28162	0.00013385	475.30076061321364	33.001	1.7969	33.001	32.251	34.048	0					162	64	5	0	0	0	0.28696	5	6344	6294;6344;6393;6440;6494		32.305	0.87544	1	5153800			39482	10836	22949	22950	47968;47969;47970;47971;47972	47969					0.11053476642291571
RPRTPPLI	8	Unmodified	_RPRTPPLI_					0	0	0		ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.30072021484375	2	475.300719	948.586885	0.2637	0.00012534	-0.0047064	-2.237E-06	0.259	0.0001231	475.3006588727984	32.881	1.819	32.936	32.182	34.001	0.055309					167	65	5	0	0	0	0.22	4	6269	6269;6317;6359;6405		39.957	1.9833	1	5092500			39483	10836	22949	22950	47973;47974;47975;47976	47973					0.11053476642291571
RPRTPPLI	8	Unmodified	_RPRTPPLI_					0	0	0		ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.3008728027344	2	475.300719	948.586885	0.20651	9.8153E-05	0.095669	4.5471E-05	0.30218	0.00014362	475.3007078962242	32.872	1.81	32.926	32.277	34.087	0.054371					158	65	4	0	0	0	0.28696	2	6264	6264;6402		32.305	0	1	5422500			39484	10836	22949	22950	47977;47978	47977					0.11053476642291571
RPRTQGVVF	9	Unmodified	_RPRTQGVVF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B;ENST00000466480.1_1_1:114448336-114454776:+|nuORF	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3062133789062	2	530.306532	1058.59851	0.27442	0.00014552	-0.57809	-0.00030656	-0.30367	-0.00016104	530.3061680950675	27.55	0.62955	27.55	27.294	27.924	0					46	21	3	0	0	0	0.30064	1	4736	4736		8.7454	0.58988	1	318300			39485	2837	22950	22951	47979	47979					0.07155673665624818
RPRTQGVVF	9	Unmodified	_RPRTQGVVF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B;ENST00000466480.1_1_1:114448336-114454776:+|nuORF	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3062133789062	2	530.306532	1058.59851	0.11391	6.0407E-05	-0.48251	-0.00025588	-0.3686	-0.00019547	530.306235065957	27.524	0.60362	27.503	27.291	27.895	-0.021412					47	20	3	0	0	0	0.18123	1	4690	4690		34.402	13.948	1	371240			39486	2837	22950	22951	47980	47980					0.07155673665624818
RPRTQGVVF	9	Unmodified	_RPRTQGVVF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B;ENST00000466480.1_1_1:114448336-114454776:+|nuORF	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3063354492188	2	530.306532	1058.59851	0.17646	9.358E-05	-0.63706	-0.00033784	-0.46059	-0.00024426	530.3061963412024	27.558	0.8	27.547	27.318	28.118	-0.01156					49	27	3	0	0	0	0.10059	1	4677	4677		38.176	18.919	1	400810			39487	2837	22950	22951	47981	47981					0.07155673665624818
RPRTQGVVF	9	Unmodified	_RPRTQGVVF_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B;ENST00000466480.1_1_1:114448336-114454776:+|nuORF	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	530.306532	1058.59851	0.27442	0.00014552	-0.57809	-0.00030656	-0.30367	-0.00016104	530.3061680950675	27.55	0.62955	27.55	27.294	27.924	0	0.017168	-1.3975E-05	NaN	38.176	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318300			39488	2837	22950	22951							0.07155673665624818
RPRTSAYIRL	10	Unmodified	_RPRTSAYIRL_					0	0	0		AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1	AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant	AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.57867431640625	3	411.578923	1231.71494	0.10913	4.4916E-05	-0.59459	-0.00024472	-0.48546	-0.00019981	411.57865207242816	29.754	0.59329	29.754	29.441	30.034	0					49	20	3	0	0	0	0.35238	1	5361	5361		12.228	0.052842	1	333770			39489	41	22951	22952	47982	47982					0.10834992165518997
RPRTSLLEA	9	Unmodified	_RPRTSLLEA_					0	0	0		ENST00000408991.3_1_19:49621717-49621960:-|nuORF	ENST00000408991.3_1_19:49621717-49621960:-|nuORF	ENST00000408991.3_1_19:49621717-49621960:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.81640625	2	521.803823	1041.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.394	1	45.454	44.954	45.954	0.059834								0	0	0	0.19534	1	10138	10138		24.021	2.2739	1				39490	10236	22952	22953	47983	47983					0.07395950083150638
RPRTVELR	8	Unmodified	_RPRTVELR_					0	0	0			REV__ENST00000493914.5_1_1:204889760-204913881:+|nuORF	REV__ENST00000493914.5_1_1:204889760-204913881:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2313232421875	2	513.811982	1025.60941	-0.021091	-1.0837E-05	0.6605	0.00033937	0.63941	0.00032854	513.8125071524986	15.706	0.30369	15.641	15.424	15.728	-0.064414					12	9	2	0	0	0	0.34367	1	1117	1117		4.3292	0	1	20420	+		39491	20729	22953	22954	47984	47984					0.09763076039894258
RPRTVELR	8	Unmodified	_RPRTVELR_					0	0	0			REV__ENST00000493914.5_1_1:204889760-204913881:+|nuORF	REV__ENST00000493914.5_1_1:204889760-204913881:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.811982	1025.60941	0.086994	4.4698E-05	0.29215	0.00015011	0.37915	0.00019481	513.8120260240777	15.593	0.26311	15.593	15.471	15.734	0	-0.030841	-0.00021518	NaN	4.3292	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10343	+		39492	20729	22953	22954							0.09763076039894258
RPRTVELR	8	Unmodified	_RPRTVELR_					0	0	0			REV__ENST00000493914.5_1_1:204889760-204913881:+|nuORF	REV__ENST00000493914.5_1_1:204889760-204913881:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	513.811982	1025.60941	0.040152	2.0631E-05	0.65482	0.00033645	0.69497	0.00035708	513.8121127723923	15.747	0.28691	15.638	15.436	15.723	-0.10981	0.013567	0.0001575	NaN	4.3292	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14153	+		39493	20729	22953	22954							0.09763076039894258
RPRVALQQSF	10	Unmodified	_RPRVALQQSF_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.3429565429688	2	601.343646	1200.67274	-0.91739	-0.00055167	0.14151	8.5095E-05	-0.77588	-0.00046657	601.3436391940309	34.952	0.73949	34.952	34.672	35.412	0					71	26	4	0	0	0	0.015324	2	6958	6916;6958		76.825	55.288	1	995600			39494	832	22954	22955	47985;47986	47986					0.08043016757119403
RPRVALQQSF	10	Unmodified	_RPRVALQQSF_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.3433227539062	2	601.343646	1200.67274	-0.97004	-0.00058333	0.32177	0.00019349	-0.64827	-0.00038984	601.3437465538085	34.841	0.74442	34.917	34.685	35.429	0.075306					64	26	3	0	0	0	0.048379	2	6936	6885;6936		59.368	40.006	1	1198000			39495	832	22954	22955	47987;47988	47988					0.08043016757119403
RPRVALQQSF	10	Unmodified	_RPRVALQQSF_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.34326171875	2	601.343646	1200.67274	-0.57058	-0.00034311	0.1788	0.00010752	-0.39178	-0.00023559	601.3436047094183	34.829	0.77592	34.906	34.614	35.39	0.077377					69	27	4	0	0	0	0.084702	2	6921	6871;6921		51.415	35.266	1	1211500			39496	832	22954	22955	47989;47990	47990					0.08043016757119403
RPRVEVGA	8	Unmodified	_RPRVEVGA_					0	0	0			REV__ENST00000305321.4_1_16:30205070-30205250:-|nuORF	REV__ENST00000305321.4_1_16:30205070-30205250:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.5687561035156	2	442.259051	882.503549	0.096786	4.2805E-05	0.20136	8.9055E-05	0.29815	0.00013186	442.2591865740416	16.547	0.80181	16.547	16.267	17.069	0					58	27	3	0	0	0	0.34198	1	1384	1384		10.824	0	1	170720	+		39497	19849	22955	22956	47991	47991					0.05759740194423557
RPRVEVGA	8	Unmodified	_RPRVEVGA_					0	0	0			REV__ENST00000305321.4_1_16:30205070-30205250:-|nuORF	REV__ENST00000305321.4_1_16:30205070-30205250:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.5687561035156	2	442.259051	882.503549	-0.072628	-3.212E-05	0.36802	0.00016276	0.29539	0.00013064	442.2592855892385	16.681	0.7489	16.567	16.219	16.968	-0.11434					57	26	3	0	0	0	0.34198	1	1422	1422		10.824	0	1	187650	+		39498	19849	22955	22956	47992	47992					0.05759740194423557
RPRVQNQVI	9	Unmodified	_RPRVQNQVI_					0	0	0		nc|ENSG00000100503|Q8N4C6-4|NIN;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3305053710938	2	555.330539	1108.64652	0.1061	5.8923E-05	-0.073148	-4.0621E-05	0.032956	1.8302E-05	555.3304219376761	23.246	0.34182	23.246	23.077	23.419	0					23	11	3	0	0	0	0.33276	1	3393	3393		3.9444	0.66309	1	72020			39499	1602	22956	22957	47993	47993					0.09654747585659607
RPRVQNQVI	9	Unmodified	_RPRVQNQVI_					0	0	0		nc|ENSG00000100503|Q8N4C6-4|NIN;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	555.330539	1108.64652	0.1061	5.8923E-05	-0.073148	-4.0621E-05	0.032956	1.8302E-05	555.3304219376761	23.246	0.34182	23.246	23.077	23.419	0	-0.051029	-5.5576E-05	NaN	3.9444	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72020			39500	1602	22956	22957							0.09654747585659607
RPRVTEPISA	10	Unmodified	_RPRVTEPISA_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3224487304688	2	563.32238	1124.63021	0.12335	6.9486E-05	-0.067986	-3.8298E-05	0.055364	3.1188E-05	563.3223690824022	27.298	1.1732	27.298	27.007	28.181	0					66	40	2	0	0	0	0.00042009	4	4583	4583;4627;4673;4728		128.57	88.334	1	3547800			39501	1572	22957	22958	47994;47995;47996;47997	47994					0.07287621628893248
RPRVTEPISA	10	Unmodified	_RPRVTEPISA_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3226928710938	2	563.32238	1124.63021	0.17025	9.5908E-05	0.024977	1.407E-05	0.19523	0.00010998	563.322453591027	27.267	1.1684	27.246	26.955	28.123	-0.021412					72	40	2	0	0	0	2.7564E-05	4	4617	4571;4617;4663;4711		139.78	94.042	1	3719700			39502	1572	22957	22958	47998;47999;48000;48001	47999					0.07287621628893248
RPRVTEPISA	10	Unmodified	_RPRVTEPISA_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.3226318359375	2	563.32238	1124.63021	0.10716	6.0364E-05	0.11786	6.6393E-05	0.22502	0.00012676	563.3225042309606	27.28	0.96459	27.268	26.958	27.923	-0.011562					63	33	2	0	0	0	2.7564E-05	4	4609	4566;4609;4654;4701		139.78	86.378	1	3834000			39503	1572	22957	22958	48002;48003;48004;48005	48003					0.07287621628893248
RPRVVIQL	8	Unmodified	_RPRVVIQL_					0	0	0		ENSG00000249471|ENST00000336614|ZNF324B;ENSG00000083812|ENST00000196482|ZNF324	ENSG00000249471|ENST00000336614|ZNF324B	ENSG00000249471|ENST00000336614|ZNF324B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.82147216796875	2	490.821818	979.629084	0.16106	7.9053E-05	-0.52801	-0.00025916	-0.36695	-0.00018011	490.8214568238679	39.126	0.57442	39.219	39.003	39.577	0.09267					44	20	3	0	0	0	0.25425	1	8241	8241		36.044	5.8194	1	590650			39504	1230	22958	22959	48006	48006					0.1384545205065706
RPRVVIQL	8	Unmodified	_RPRVVIQL_					0	0	0		ENSG00000249471|ENST00000336614|ZNF324B;ENSG00000083812|ENST00000196482|ZNF324	ENSG00000249471|ENST00000336614|ZNF324B	ENSG00000249471|ENST00000336614|ZNF324B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.82159423828125	2	490.821818	979.629084	0.43472	0.00021337	-0.83175	-0.00040824	-0.39703	-0.00019487	490.82135798851044	39.115	0.80872	39.214	38.953	39.762	0.099407					43	28	2	0	0	0	0.3671	1	8207	8207		23.148	3.7094	1	543300			39505	1230	22958	22959	48007	48007					0.1384545205065706
RPRVVNLV	8	Unmodified	_RPRVVNLV_					0	0	0		ENST00000565712.1_1_15:83674416-83680265:-|nuORF	ENST00000565712.1_1_15:83674416-83680265:-|nuORF	ENST00000565712.1_1_15:83674416-83680265:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.8067321777344	2	476.806168	951.597784	0.011631	5.5458E-06	0.40553	0.00019336	0.41716	0.0001989	476.8064026680837	29.691	0.4358	29.704	29.507	29.943	0.013474					30	14	3	0	0	0	0.41758	1	5343	5343		16.942	0	1	188390			39506	11969	22959	22960	48008	48008					0.12004879016569703
RPRWHQPSH	9	Unmodified	_RPRWHQPSH_					0	0	0			REV__nc|ENSG00000215117|Q9Y4M8|LINC00588	REV__nc|ENSG00000215117|Q9Y4M8|LINC00588	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.8116455078125	2	600.810305	1199.60606	0.29053	0.00017456	1.7154	0.0010306	2.0059	0.0012052	600.8113231273958	18.711	0.67815	18.711	18.505	19.183	0					44	23	3	0	0	0	0.33508	1	2050	2050		3.5965	0.31518	1	92831	+		39507	23189	22960	22961	48009	48009					0.014238259858757374
RPRWSLQSS	9	Unmodified	_RPRWSLQSS_					0	0	0		ENST00000465904.1_1_6:109770366-109770675:-|nuORF	ENST00000465904.1_1_6:109770366-109770675:-|nuORF	ENST00000465904.1_1_6:109770366-109770675:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.286865234375	2	558.799072	1115.58359	-0.018333	-1.0244E-05	-0.43965	-0.00024568	-0.45799	-0.00025592	558.799058111843	14.091	0.34347	14.091	13.847	14.191	0					19	11	2	0	0	0	0.31417	1	621	621		6.7232	0	1	53436			39508	10805	22961	22962	48010	48010					0.03042181797604826
RPRYAIGV	8	Unmodified	_RPRYAIGV_					0	0	0		nc|ENSG00000104415|O95388-4|CCN4;nc|ENSG00000104415|O95388-2|CCN4;ENSG00000104415|ENST00000250160|CCN4	nc|ENSG00000104415|O95388-4|CCN4	nc|ENSG00000104415|O95388-4|CCN4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2765808105469	2	466.277244	930.539935	0.15674	7.3084E-05	-0.7008	-0.00032677	-0.54406	-0.00025368	466.2766887869377	29.799	0.69983	29.799	29.441	30.141	0					43	24	3	0	0	0	0.34247	1	5377	5377		8.5933	5.598	1	157550			39509	1890	22962	22963	48011	48011					0.07188617091128435
RPRYAIGV	8	Unmodified	_RPRYAIGV_					0	0	0		nc|ENSG00000104415|O95388-4|CCN4;nc|ENSG00000104415|O95388-2|CCN4;ENSG00000104415|ENST00000250160|CCN4	nc|ENSG00000104415|O95388-4|CCN4	nc|ENSG00000104415|O95388-4|CCN4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2770080566406	2	466.277244	930.539935	-0.038355	-1.7884E-05	-0.48567	-0.00022646	-0.52403	-0.00024434	466.2768788067804	29.745	0.67874	29.759	29.359	30.038	0.013474					44	22	3	0	0	0	0.34247	1	5371	5371		8.5933	0.68312	1	217530			39510	1890	22962	22963	48012	48012					0.07188617091128435
RPRYQLKE	8	Unmodified	_RPRYQLKE_					0	0	0		ENST00000211936.10_1_6:27425181-27440162:-|nuORF	ENST00000211936.10_1_6:27425181-27440162:-|nuORF	ENST00000211936.10_1_6:27425181-27440162:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3118286132812	2	545.311815	1088.60908	0.2348	0.00012804	0.12093	6.5944E-05	0.35573	0.00019398	545.3118688610613	15.646	1.0566	15.646	15.127	16.184	0					74	36	4	0	0	0	0.23736	3	1096	1051;1096;1139		37.974	2.4113	1	595750			39511	8806	22963	22964	48013;48014;48015	48014					0.06831656320036927
RPRYQLKE	8	Unmodified	_RPRYQLKE_					0	0	0		ENST00000211936.10_1_6:27425181-27440162:-|nuORF	ENST00000211936.10_1_6:27425181-27440162:-|nuORF	ENST00000211936.10_1_6:27425181-27440162:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3119506835938	2	545.311815	1088.60908	0.38841	0.0002118	0.16163	8.814E-05	0.55004	0.00029994	545.3118717704809	15.776	0.99331	15.666	15.151	16.144	-0.10981					73	33	4	0	0	0	0.18275	2	1143	1143;1192		46.021	6.0713	1	526870			39512	8806	22963	22964	48016;48017	48016					0.06831656320036927
RPRYQLKE	8	Unmodified	_RPRYQLKE_					0	0	0		ENST00000211936.10_1_6:27425181-27440162:-|nuORF	ENST00000211936.10_1_6:27425181-27440162:-|nuORF	ENST00000211936.10_1_6:27425181-27440162:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3118286132812	2	545.311815	1088.60908	0.38018	0.00020731	0.094961	5.1783E-05	0.47514	0.0002591	545.3118267566344	15.715	0.90649	15.651	15.158	16.064	-0.064414					67	30	4	0	0	0	0.23736	1	1077	1077		37.974	1.4678	1	620570			39513	8806	22963	22964	48018	48018					0.06831656320036927
RPRYRVPDVL	10	Unmodified	_RPRYRVPDVL_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB;ENST00000526210.1_1_11:62402291-62407104:-|nuORF;ENST00000524437.5_1_11:62402291-62406896:-|nuORF	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.6067199707031	3	424.250806	1269.73059	-0.034426	-1.4605E-05	-0.54205	-0.00022996	-0.57648	-0.00024457	424.25048319919057	38.153	0.79963	38.244	37.821	38.62	0.090881					71	28	3	0	0	0	0.31867	1	7925	7925		7.9454	0.90831	1	444300			39514	1361	22964	22965	48019	48019					0.10651278682553311
RPRYRVPDVL	10	Unmodified	_RPRYRVPDVL_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB;ENST00000526210.1_1_11:62402291-62407104:-|nuORF;ENST00000524437.5_1_11:62402291-62406896:-|nuORF	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.6065673828125	3	424.250806	1269.73059	-0.063711	-2.7029E-05	-0.61194	-0.00025962	-0.67566	-0.00028665	424.25044362324144	38.046	0.91344	38.144	37.654	38.568	0.097527					77	32	3	0	0	0	0.31364	1	7896	7896		15.739	4.6733	1	419770			39515	1361	22964	22965	48020	48020					0.10651278682553311
RPRYRVPDVL	10	Unmodified	_RPRYRVPDVL_					0	0	0		ENSG00000089597|ENST00000356638|GANAB;nc|ENSG00000089597|Q14697-2|GANAB;ENST00000526210.1_1_11:62402291-62407104:-|nuORF;ENST00000524437.5_1_11:62402291-62406896:-|nuORF	ENSG00000089597|ENST00000356638|GANAB	ENSG00000089597|ENST00000356638|GANAB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	424.250806	1269.73059	-0.1015	-4.3063E-05	-0.42091	-0.00017857	-0.52241	-0.00022163	424.5850221783617	38.234	0.91463	38.234	37.735	38.649	0	0.026497	0.00013331	NaN	20.581	69	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472950			39516	1361	22964	22965							0.10651278682553311
RPSAAGINL	9	Unmodified	_RPSAAGINL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7587890625	2	449.758884	897.503215	0.56916	0.00025598	-0.57512	-0.00025866	-0.0059582	-2.6797E-06	449.75853408102415	37.151	1.1115	37.151	36.844	37.956	0					94	39	4	0	0	0	0.053988	2	7638	7586;7638		51.415	11.352	1	1276400			39517	3909	22965	22966	48021;48022	48022					0.05036320474550848
RPSAAGINL	9	Unmodified	_RPSAAGINL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.75872802734375	2	449.758884	897.503215	0.2503	0.00011258	-0.22782	-0.00010246	0.022487	1.0114E-05	449.75867649362664	36.989	1.224	37.076	36.815	38.039	0.08741					111	44	4	0	0	0	0.073988	2	7556	7556;7605		43.982	7.9376	1	1456700			39518	3909	22965	22966	48023;48024	48023					0.05036320474550848
RPSAAGINL	9	Unmodified	_RPSAAGINL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.7587890625	2	449.758884	897.503215	0.42929	0.00019308	-0.34996	-0.0001574	0.079322	3.5676E-05	449.758610812913	37.002	1.0762	37.095	36.79	37.866	0.093014					88	39	3	0	0	0	0.059067	2	7588	7543;7588		49.527	13.483	1	1439700			39519	3909	22965	22966	48025;48026	48026					0.05036320474550848
RPSARQWAE	9	Unmodified	_RPSARQWAE_					0	0	0			REV__ENST00000433656.2_1_9:98637459-98637690:-|nuORF	REV__ENST00000433656.2_1_9:98637459-98637690:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.7838134765625	2	550.783422	1099.55229	0.59792	0.00032932	-0.11904	-6.5568E-05	0.47887	0.00026376	550.7833673175521	19.968	0.60312	19.913	19.624	20.227	-0.055693					58	21	4	0	0	0	0.31763	1	2473	2473		6.2058	0	1	581080	+		39520	20972	22966	22967	48027	48027					0.006496087635014192
RPSASTQAL	9	Unmodified	_RPSASTQAL_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7538146972656	2	465.753798	929.493044	-0.075513	-3.517E-05	0.2997	0.00013959	0.22419	0.00010442	465.7539213404477	22.001	0.79962	22.001	21.763	22.563	0					67	28	4	0	0	0	0.015535	2	3021	2977;3021		70.929	20.996	1	1053100			39521	259	22967	22968	48028;48029	48029					0.025477127493331864
RPSASTQAL	9	Unmodified	_RPSASTQAL_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.75384521484375	2	465.753798	929.493044	0.00061388	2.8592E-07	0.31501	0.00014672	0.31562	0.000147	465.7538894382657	22.047	0.87213	21.947	21.744	22.616	-0.10034					77	31	4	0	0	0	0.01251	2	3040	2999;3040		75.571	25.638	1	1048400			39522	259	22967	22968	48030;48031	48031					0.025477127493331864
RPSASTQAL	9	Unmodified	_RPSASTQAL_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7538757324219	2	465.753798	929.493044	0.061322	2.8561E-05	0.2639	0.00012291	0.32523	0.00015147	465.7538686820278	22.007	0.92956	21.958	21.745	22.674	-0.049377					80	32	4	0	0	0	0.033439	2	3025	2977;3025		59.052	17.213	1	1009700			39523	259	22967	22968	48032;48033	48033					0.025477127493331864
RPSDRNQKNSL	11	Unmodified	_RPSDRNQKNSL_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.90057373046875	3	438.900613	1313.68001	-0.27373	-0.00012014	-0.070723	-3.1041E-05	-0.34445	-0.00015118	438.90059863431003	13.216	0.43612	13.116	12.953	13.389	-0.09929					28	14	3	0	0	0	0.43809	1	375	375		6.2344	1.8282	1	185920			39524	5431	22968	22969	48034	48034					0.03571704566911649
RPSEAGQCRF	10	Unmodified	_RPSEAGQCRF_					0	0	0		nc|ENSG00000167705|Q96NA2-2|RILP;ENST00000570858.5_1_17:1549738-1551855:-|nuORF;ENSG00000167705|ENST00000301336|RILP	nc|ENSG00000167705|Q96NA2-2|RILP	nc|ENSG00000167705|Q96NA2-2|RILP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7754516601562	2	575.774739	1149.53493	-0.098421	-5.6668E-05	2.6635	0.0015336	2.5651	0.0014769	575.7762077611545	13.887	0.25667	13.887	13.767	14.024	0					12	8	2	0	0	0	0.40262	1	584	584		2.9952	0	1	31963			39525	6203	22969	22970	48035	48035					-0.0338605483379979
RPSEAGQCRF	10	Unmodified	_RPSEAGQCRF_					0	0	0		nc|ENSG00000167705|Q96NA2-2|RILP;ENST00000570858.5_1_17:1549738-1551855:-|nuORF;ENSG00000167705|ENST00000301336|RILP	nc|ENSG00000167705|Q96NA2-2|RILP	nc|ENSG00000167705|Q96NA2-2|RILP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	575.774739	1149.53493	-0.018397	-1.0593E-05	2.8682	0.0016514	2.8498	0.0016408	575.7762740350464	14.023	0.23328	13.918	13.79	14.023	-0.10466	0.015296	0.00010763	NaN	2.9952	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36356			39526	6203	22969	22970							-0.0338605483379979
RPSELIRNI	9	Unmodified	_RPSELIRNI_					0	0	0			REV__ENSG00000007174|ENST00000262442|DNAH9;REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.773193359375	2	549.324922	1096.63529	0.50124	0.00027534	-0.22055	-0.00012115	0.28069	0.00015419	549.3246544255252	29.156	0.38857	29.169	29	29.389	0.012266					20	13	2	0	0	0	0.25706	1	5159	5159		6.7232	1.9672	1	140390	+		39527	18519;13381	22970	22971	48036	48036					0.0908392549151813
RPSEQLRLS	9	Unmodified	_RPSEQLRLS_					0	0	0			REV__ENSG00000124216|ENST00000244050|SNAI1	REV__ENSG00000124216|ENST00000244050|SNAI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.306640625	2	543.306729	1084.59891	0.32729	0.00017782	-0.43206	-0.00023474	-0.10477	-5.6924E-05	543.3065016280899	29.799	0.49656	29.812	29.623	30.12	0.013474					38	16	3	0	0	0	0.33508	1	5433	5433		3.5965	0	1	261860	+		39528	15224	22971	22972	48037	48037					0.059990485947992056
RPSETHADYL	10	Unmodified	_RPSETHADYL_					0	0	0		ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.7864379882812	2	594.785827	1187.5571	0.42862	0.00025494	-0.4087	-0.00024309	0.019925	1.1851E-05	594.7860149664501	24.658	0.5071	24.658	24.423	24.93	0					36	16	3	0	0	0	0.37007	1	3834	3834		8.9762	4.0792	1	100950			39529	1731	22972	22973	48038	48038					-0.029175518843885584
RPSETHADYL	10	Unmodified	_RPSETHADYL_					0	0	0		ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7862548828125	2	594.785827	1187.5571	0.39079	0.00023244	-0.5362	-0.00031892	-0.14541	-8.6486E-05	594.785971484719	24.868	0.45467	24.812	24.544	24.999	-0.055931					29	15	3	0	0	0	0.30656	1	3876	3876		19.626	11.47	1	104490			39530	1731	22972	22973	48039	48039					-0.029175518843885584
RPSETHADYL	10	Unmodified	_RPSETHADYL_					0	0	0		ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.3348388671875	2	594.785827	1187.5571	0.13322	7.9238E-05	0.36308	0.00021596	0.4963	0.00029519	594.7859313159983	24.75	0.44311	24.719	24.545	24.988	-0.031408					24	14	2	0	0	0	0.32088	1	3818	3818		2.7352	2.7352	1	104400			39531	1731	22972	22973	48040	48040					-0.029175518843885584
RPSFSEGTDLF	11	Unmodified	_RPSFSEGTDLF_					0	0	0		ENSG00000166535|ENST00000299698|A2ML1;nc|ENSG00000166535|A8K2U0-2|A2ML1	ENSG00000166535|ENST00000299698|A2ML1	ENSG00000166535|ENST00000299698|A2ML1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.3007202148438	2	628.30131	1254.58807	0.03844	2.4152E-05	-0.89544	-0.00056261	-0.857	-0.00053846	628.3007961869583	27.826	0.65243	27.826	27.589	28.241	0					53	22	3	0	0	0	0.42346	2	4765	4765;4813		8.1555	0	1	348030			39532	6092	22973	22974	48041;48042	48041					-0.02904398570126432
RPSFSEGTDLF	11	Unmodified	_RPSFSEGTDLF_					0	0	0		ENSG00000166535|ENST00000299698|A2ML1;nc|ENSG00000166535|A8K2U0-2|A2ML1	ENSG00000166535|ENST00000299698|A2ML1	ENSG00000166535|ENST00000299698|A2ML1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	628.3009033203125	2	628.30131	1254.58807	-0.2324	-0.00014602	-0.46765	-0.00029383	-0.70005	-0.00043984	628.3010049259965	27.864	0.64294	27.856	27.6	28.243	-0.0086231					53	22	3	0	0	0	0.42346	2	4759	4759;4803		8.1555	0	1	445240			39533	6092	22973	22974	48043;48044	48043					-0.02904398570126432
RPSFSEGTDLF	11	Unmodified	_RPSFSEGTDLF_					0	0	0		ENSG00000166535|ENST00000299698|A2ML1;nc|ENSG00000166535|A8K2U0-2|A2ML1	ENSG00000166535|ENST00000299698|A2ML1	ENSG00000166535|ENST00000299698|A2ML1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.3004760742188	2	628.30131	1254.58807	-0.16139	-0.0001014	-0.66663	-0.00041884	-0.82802	-0.00052025	628.3009369563446	27.834	0.70096	27.834	27.567	28.268	0.0004673					56	24	3	0	0	0	0.42346	2	4752	4752;4805		8.1555	0	1	448240			39534	6092	22973	22974	48045;48046	48045					-0.02904398570126432
RPSGAVVTL	9	Unmodified	_RPSGAVVTL_					0	0	0		ENST00000596477.1_1_19:50059010-50060533:-|nuORF;ENSG00000142546|ENST00000596358|NOSIP	ENST00000596477.1_1_19:50059010-50060533:-|nuORF	ENST00000596477.1_1_19:50059010-50060533:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2815856933594	2	450.269084	898.523616	0.31339	0.00014111	0.044931	2.0231E-05	0.35832	0.00016134	450.26903719460165	36.011	0.73452	36.011	35.745	36.479	0					65	26	4	0	0	0	0.047483	3	7272	7272;7286;7331		53.833	11.993	1	1229700			39535	4451	22974	22975	48047;48048;48049	48047					0.07029491134380805
RPSGAVVTL	9	Unmodified	_RPSGAVVTL_					0	0	0		ENST00000596477.1_1_19:50059010-50060533:-|nuORF;ENSG00000142546|ENST00000596358|NOSIP	ENST00000596477.1_1_19:50059010-50060533:-|nuORF	ENST00000596477.1_1_19:50059010-50060533:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2815856933594	2	450.269084	898.523616	0.29459	0.00013265	-0.029935	-1.3479E-05	0.26466	0.00011917	450.2690229076492	35.895	0.70707	35.978	35.624	36.331	0.082355					70	25	4	0	0	0	0.04299	2	7202	7202;7245		55.503	15.859	1	1367500			39536	4451	22974	22975	48050;48051	48050					0.07029491134380805
RPSGAVVTL	9	Unmodified	_RPSGAVVTL_					0	0	0		ENST00000596477.1_1_19:50059010-50060533:-|nuORF;ENSG00000142546|ENST00000596358|NOSIP	ENST00000596477.1_1_19:50059010-50060533:-|nuORF	ENST00000596477.1_1_19:50059010-50060533:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.28155517578125	2	450.269084	898.523616	0.37102	0.00016706	-0.062195	-2.8004E-05	0.30883	0.00013906	450.26899587690474	35.841	0.80488	35.928	35.698	36.503	0.08625					69	28	4	0	0	0	0.023967	3	7227	7227;7237;7288		62.573	19.748	1	1260400			39537	4451	22974	22975	48052;48053;48054	48052					0.07029491134380805
RPSGLGSPRE	10	Unmodified	_RPSGLGSPRE_					0	0	0		ENST00000374514.7_1_1:24117678-24119183:+|nuORF	ENST00000374514.7_1_1:24117678-24119183:+|nuORF	ENST00000374514.7_1_1:24117678-24119183:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7462158203125	2	528.283254	1054.55196	0.28164	0.00014878	-0.14205	-7.5044E-05	0.13958	7.3739E-05	528.2830286019457	23.185	0.60879	23.185	22.904	23.513	0					24	20	2	0	0	0	0.32088	1	3411	3411		2.7352	0.67545	1	46355			39538	9895	22975	22976	48055	48055					0.02686189043674858
RPSGLHGDVSL	11	Unmodified	_RPSGLHGDVSL_					0	0	0		ENSG00000149016|ENST00000476907|TUT1	ENSG00000149016|ENST00000476907|TUT1	ENSG00000149016|ENST00000476907|TUT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.2750854492188	2	569.304187	1136.59382	0.042072	2.3952E-05	-0.85919	-0.00048914	-0.81712	-0.00046519	569.3033896772699	31.326	0.43513	31.326	31.118	31.553	0					27	15	2	0	0	0	0.27286	1	5840	5840		36.395	25.571	1	181230			39539	4839	22976	22977	48056	48056					0.03098744732187697
RPSGLHGDVSL	11	Unmodified	_RPSGLHGDVSL_					0	0	0		ENSG00000149016|ENST00000476907|TUT1	ENSG00000149016|ENST00000476907|TUT1	ENSG00000149016|ENST00000476907|TUT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.27490234375	2	569.304187	1136.59382	0.10044	5.7179E-05	-0.44141	-0.00025129	-0.34097	-0.00019412	569.3033762816946	31.321	0.49409	31.364	31.13	31.624	0.042366					32	17	3	0	0	0	0.26027	1	5855	5855		39.213	17.466	1	255940			39540	4839	22976	22977	48057	48057					0.03098744732187697
RPSGLHGDVSL	11	Unmodified	_RPSGLHGDVSL_					0	0	0		ENSG00000149016|ENST00000476907|TUT1	ENSG00000149016|ENST00000476907|TUT1	ENSG00000149016|ENST00000476907|TUT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.2752075195312	2	569.304187	1136.59382	0.20195	0.00011497	-0.43586	-0.00024814	-0.23391	-0.00013317	569.3033887955563	31.241	0.43704	31.282	31.07	31.507	0.040989					27	15	2	0	0	0	0.30331	1	5794	5794		27.088	5.3417	1	188580			39541	4839	22976	22977	48058	48058					0.03098744732187697
RPSGPGPEL	9	Unmodified	_RPSGPGPEL_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2430725097656	2	455.243067	908.47158	0.11887	5.4117E-05	0.17052	7.7626E-05	0.28939	0.00013174	455.2430330357261	28.787	0.99601	28.787	28.389	29.385	0					94	35	4	0	0	0	0.00051734	2	5055	5004;5055		128.93	70.254	1	1711600			39542	1156	22977	22978	48059;48060	48060					0.013683277206155253
RPSGPGPEL	9	Unmodified	_RPSGPGPEL_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2430725097656	2	455.243067	908.47158	0.10011	4.5573E-05	0.1901	8.6542E-05	0.29021	0.00013212	455.24303806300327	28.747	0.96078	28.743	28.411	29.372	-0.0042572					85	33	4	0	0	0	0.001957	2	5048	4999;5048		110.55	60.62	1	1919900			39543	1156	22977	22978	48061;48062	48062					0.013683277206155253
RPSGPGPEL	9	Unmodified	_RPSGPGPEL_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2431945800781	2	455.243067	908.47158	-0.046154	-2.1011E-05	0.34412	0.00015666	0.29796	0.00013565	455.24314120107044	28.728	1.0297	28.729	28.438	29.468	0.00046921					101	36	4	0	0	0	0.001957	2	5049	5001;5049		110.55	60.62	1	1939500			39544	1156	22977	22978	48063;48064	48064					0.013683277206155253
RPSGPSKAL	9	Unmodified	_RPSGPSKAL_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7668151855469	2	456.766709	911.518865	-0.078992	-3.6081E-05	0.071296	3.2566E-05	-0.0076954	-3.515E-06	456.766770712796	15.965	1.1347	15.965	15.471	16.606	0					117	39	4	0	0	0	0.0035713	4	1202	1113;1160;1202;1248		97.741	23.924	1	2296800			39545	1447	22978	22979	48065;48066;48067;48068	48067					0.05956606991605895
RPSGPSKAL	9	Unmodified	_RPSGPSKAL_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7668762207031	2	456.766709	911.518865	-0.06124	-2.7972E-05	0.095374	4.3563E-05	0.034134	1.5591E-05	456.76679348581837	16.06	1.2052	15.946	15.544	16.749	-0.11434					127	41	5	0	0	0	0.0035713	4	1250	1162;1206;1250;1294		97.741	21.98	1	2234500			39546	1447	22978	22979	48069;48070;48071;48072	48071					0.05956606991605895
RPSGPSKAL	9	Unmodified	_RPSGPSKAL_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7668762207031	2	456.766709	911.518865	0.00031754	1.4504E-07	-0.0041866	-1.9123E-06	-0.0038691	-1.7673E-06	456.76674327125295	16.015	1.1847	15.952	15.489	16.674	-0.062534					122	40	5	0	0	0	0.0047555	3	1222	1131;1178;1222		88.364	21.907	1	2513300			39547	1447	22978	22979	48073;48074;48075	48075					0.05956606991605895
RPSGRRESL	9	Unmodified	_RPSGRRESL_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ENST00000487016.1_1_3:4774792-4777134:+|nuORF	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2968139648438	2	529.296696	1056.57884	0.037514	1.9856E-05	1.3523	0.00071578	1.3898	0.00073564	529.2982091133505	13.629	0.72113	13.529	13.389	14.11	-0.099291					71	25	4	0	0	0	0.22935	1	473	473		19.362	2.4196	1	292450			39548	4931	22979	22980	48076	48076					0.052812976548466395
RPSILYAIS	9	Unmodified	_RPSILYAIS_					0	0	0			REV__ENSG00000072315|ENST00000262839|TRPC5	REV__ENSG00000072315|ENST00000262839|TRPC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.7826843261719	2	510.297842	1018.58113	0.2188	0.00011165	-0.043629	-2.2264E-05	0.17517	8.9389E-05	510.2977537833571	18.034	0.38067	18.034	17.835	18.216	0					25	12	3	0	0	0	0.25988	1	1779	1779		3.9444	0	1	35192	+		39549	13759	22980	22981	48077	48077					0.07258333339939327
RPSILYAIS	9	Unmodified	_RPSILYAIS_					0	0	0			REV__ENSG00000072315|ENST00000262839|TRPC5	REV__ENSG00000072315|ENST00000262839|TRPC5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	510.297842	1018.58113	0.081079	4.1374E-05	0.30026	0.00015322	0.38133	0.00019459	510.2979100607765	18.208	0.42854	18.09	17.866	18.295	-0.11739	-0.0073679	-1.2848E-05	NaN	3.9444	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35756	+		39550	13759	22980	22981							0.07258333339939327
RPSILYAIS	9	Unmodified	_RPSILYAIS_					0	0	0			REV__ENSG00000072315|ENST00000262839|TRPC5	REV__ENSG00000072315|ENST00000262839|TRPC5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	510.297842	1018.58113	0.0048182	2.4587E-06	0.54454	0.00027788	0.54936	0.00028034	510.2980740505264	18.227	0.47024	18.169	17.902	18.372	-0.058172	0.0709	0.00023647	NaN	3.9444	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41264	+		39551	13759	22980	22981							0.07258333339939327
RPSIVGCKNL	10	Unmodified	_RPSIVGCKNL_					0	0	0			REV__ENST00000492525.1_1_8:29974982-29975219:-|nuORF	REV__ENST00000492525.1_1_8:29974982-29975219:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.25634765625	2	543.808051	1085.60155	0.16115	8.7636E-05	-2.2496	-0.0012233	-2.0884	-0.0011357	543.8067419506577	14.38	0.25741	14.38	14.221	14.478	0					14	8	2	0	0	0	0.32132	1	704	704		1.4819	0.79152	1	40328	+		39552	15673	22981	22982	48078	48078					0.06217180728117455
RPSIVGCKNL	10	Unmodified	_RPSIVGCKNL_					0	0	0			REV__ENST00000492525.1_1_8:29974982-29975219:-|nuORF	REV__ENST00000492525.1_1_8:29974982-29975219:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.808051	1085.60155	0.25934	0.00014103	-2.1773	-0.001184	-1.9179	-0.001043	543.8067091348689	14.483	0.22052	14.417	14.289	14.51	-0.066068	0.022962	-6.2979E-05	NaN	1.4819	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60345	+		39553	15673	22981	22982							0.06217180728117455
RPSKNAANGTV	11	Unmodified	_RPSKNAANGTV_					0	0	0			REV__ENST00000533214.1_1_11:130775930-130776541:-|nuORF	REV__ENST00000533214.1_1_11:130775930-130776541:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8042602539062	2	557.801811	1113.58907	0.13325	7.4328E-05	1.8935	0.0010562	2.0267	0.0011305	557.8036813316915	16.814	0.78355	16.7	16.33	17.114	-0.11434					82	27	5	0	0	0	0.45367	1	1411	1411		4.1895	0.59301	1	360680	+		39554	22043	22982	22983	48079	48079					0.03681860589404096
RPSLALSWRAK	11	Unmodified	_RPSLALSWRAK_					0	0	0			REV__ENST00000472528.5_1_3:53269083-53276224:-|nuORF	REV__ENST00000472528.5_1_3:53269083-53276224:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	643.370361328125	2	642.880396	1283.74624	1.0537	0.00067743	-0.7794	-0.00050106	0.27434	0.00017637	642.8793021798949	50.531	0.52793	50.576	50.318	50.846	0.044891					34	18	3	0	0	0	0.31739	1	11701	11701		21.59	3.2171	1	682510	+		39555	21370	22983	22984	48080	48080					0.11571565199596989
RPSLALSWRAK	11	Unmodified	_RPSLALSWRAK_					0	0	0			REV__ENST00000472528.5_1_3:53269083-53276224:-|nuORF	REV__ENST00000472528.5_1_3:53269083-53276224:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.8800659179688	2	642.880396	1283.74624	1.1058	0.00071093	-0.90516	-0.00058191	0.20069	0.00012902	642.879289991625	50.542	0.51083	50.562	50.335	50.846	0.020691					33	18	3	0	0	0	0.41288	1	11741	11741		9.544	0.79857	1	679750	+		39556	21370	22983	22984	48081	48081					0.11571565199596989
RPSLALSWRLS	11	Unmodified	_RPSLALSWRLS_					0	0	0			REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	643.3724975585938	2	643.372404	1284.73025	0.4986	0.00032078	-0.29264	-0.00018828	0.20595	0.0001325	643.3721708503311	50.144	0.78957	50.144	49.729	50.518	0					102	28	5	0	0	0	0.0069772	3	11611	11561;11611;11662		81.915	6.3446	1	6086800	+		39557	21110	22984	22985	48082;48083;48084	48083					0.09927858962691971
RPSLALSWRLS	11	Unmodified	_RPSLALSWRLS_					0	0	0			REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.2506408691406	3	429.250695	1284.73025	0.39706	0.00017044	-0.72583	-0.00031156	-0.32877	-0.00014112	429.2508390552716	50.147	1.8253	50.168	49.746	51.572	0.020695					236	68	6	0	0	0	0.3457	1	11688	11688		18.122	0.67891	1	32127000	+		39558	21110	22984	22985	48085	48085					0.09927858962691971
RPSLALSWRLS	11	Unmodified	_RPSLALSWRLS_					0	0	0			REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	643.372404	1284.73025	0.4986	0.00032078	-0.29264	-0.00018828	0.20595	0.0001325	643.3721708503311	50.144	0.78957	50.144	49.729	50.518	0	-0.021851	0.00029118	NaN	81.915	102	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6086800	+		39559	21110	22984	22985							0.09927858962691971
RPSLALSWRLS	11	Unmodified	_RPSLALSWRLS_					0	0	0			REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	643.372404	1284.73025	0.85504	0.00055011	-0.60155	-0.00038702	0.25349	0.00016309	643.3719616239974	50.158	0.96727	50.203	49.825	50.792	0.044891	0.037387	-0.0001063	NaN	81.915	104	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6192200	+		39560	21110	22984	22985							0.09927858962691971
RPSLALSWRLS	11	Unmodified	_RPSLALSWRLS_					0	0	0			REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	643.372404	1284.73025	0.8802	0.00056629	-0.63663	-0.00040959	0.24356	0.0001567	643.371948656467	50.129	1.1745	50.15	49.802	50.976	0.020695	-0.015536	-0.00015145	NaN	81.915	107	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6118000	+		39561	21110	22984	22985							0.09927858962691971
RPSLLEVFV	9	Unmodified	_RPSLLEVFV_					0	0	0			REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A	REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3062133789062	2	530.313492	1058.61243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.539	1	27.517	27.017	28.017	-0.021412								0	0	0	0.20639	1	4690	4690		20.454	2.3073	1		+		39562	18838	22985	22986	48086	48086					0.08546906374044738
RPSLRALL	8	Unmodified	_RPSLRALL_					0	0	0		ENSG00000163453|ENST00000295666|IGFBP7;nc|ENSG00000163453|Q16270-2|IGFBP7	ENSG00000163453|ENST00000295666|IGFBP7	ENSG00000163453|ENST00000295666|IGFBP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.30078125	2	463.300719	924.586885	-0.019157	-8.8752E-06	0.075057	3.4774E-05	0.055901	2.5899E-05	463.3008200512899	43.355	1.3757	43.355	42.954	44.33	0					149	50	4	0	0	0	0.071344	3	9490	9490;9581;9633		68.081	13.307	1	19057000			39563	5680	22986	22987	48087;48088;48089	48087					0.12157476642266829
RPSLRALL	8	Unmodified	_RPSLRALL_					0	0	0		ENSG00000163453|ENST00000295666|IGFBP7;nc|ENSG00000163453|Q16270-2|IGFBP7	ENSG00000163453|ENST00000295666|IGFBP7	ENSG00000163453|ENST00000295666|IGFBP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.3009033203125	2	463.300719	924.586885	0.092585	4.2895E-05	0.0068871	3.1908E-06	0.099472	4.6086E-05	463.30084225285054	42.979	1.4056	43.064	42.676	44.082	0.085197					144	51	4	0	0	0	0.11046	3	9436	9386;9436;9487		58.679	6.2513	1	20460000			39564	5680	22986	22987	48090;48091;48092	48091					0.12157476642266829
RPSLRALL	8	Unmodified	_RPSLRALL_					0	0	0		ENSG00000163453|ENST00000295666|IGFBP7;nc|ENSG00000163453|Q16270-2|IGFBP7	ENSG00000163453|ENST00000295666|IGFBP7	ENSG00000163453|ENST00000295666|IGFBP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.30078125	2	463.300719	924.586885	0.017501	8.1081E-06	-0.00077694	-3.5996E-07	0.016724	7.7482E-06	463.3008520218438	42.911	1.3951	43.003	42.633	44.028	0.091362					158	51	5	0	0	0	0.11046	4	9324	9324;9371;9411;9459		58.679	12.658	1	19472000			39565	5680	22986	22987	48093;48094;48095;48096	48093					0.12157476642266829
RPSLRALLL	9	Unmodified	_RPSLRALLL_					0	0	0		ENSG00000163453|ENST00000295666|IGFBP7;nc|ENSG00000163453|Q16270-2|IGFBP7	ENSG00000163453|ENST00000295666|IGFBP7	ENSG00000163453|ENST00000295666|IGFBP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.8429565429688	2	519.842751	1037.67095	0.49792	0.00025884	-0.94973	-0.00049371	-0.45181	-0.00023487	519.8427454609839	52.93	2.3172	52.93	52.6	54.917	0					265	85	5	0	0	0	0.037019	5	12499	12407;12450;12499;12543;12592		57.722	15.228	1	77291000			39566	5680	22987	22988	48097;48098;48099;48100;48101	48099					0.15362007739167893
RPSLRALLL	9	Unmodified	_RPSLRALLL_					0	0	0		ENSG00000163453|ENST00000295666|IGFBP7;nc|ENSG00000163453|Q16270-2|IGFBP7	ENSG00000163453|ENST00000295666|IGFBP7	ENSG00000163453|ENST00000295666|IGFBP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.843505859375	2	519.842751	1037.67095	0.61168	0.00031798	-0.95724	-0.00049762	-0.34556	-0.00017964	519.8427643245083	52.852	2.2747	52.903	52.603	54.878	0.050575					260	84	5	0	0	0	0.026579	5	12434	12389;12434;12484;12529;12579		61.602	15.902	1	73584000			39567	5680	22987	22988	48102;48103;48104;48105;48106	48103					0.15362007739167893
RPSLRALLL	9	Unmodified	_RPSLRALLL_					0	0	0		ENSG00000163453|ENST00000295666|IGFBP7;nc|ENSG00000163453|Q16270-2|IGFBP7	ENSG00000163453|ENST00000295666|IGFBP7	ENSG00000163453|ENST00000295666|IGFBP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.8429565429688	2	519.842751	1037.67095	0.41607	0.00021629	-0.9974	-0.00051849	-0.58133	-0.0003022	519.8426614463973	53.117	2.2726	53.108	52.761	55.034	-0.0096054					249	83	5	0	0	0	0.015924	4	12526	12484;12526;12570;12618		70.332	24.632	1	73181000			39568	5680	22987	22988	48107;48108;48109;48110	48108					0.15362007739167893
RPSLRLQL	8	Unmodified	_RPSLRLQL_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.8113098144531	2	491.811451	981.608348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.567	1	42.567	42.067	43.067	0								0	0	0	0.23968	1	9276	9276		38.176	3.2435	1				39569	4844	22988	22989	48111	48111					0.11680861670993181
RPSLRLQLL	9	Unmodified	_RPSLRLQLL_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.353759765625	2	548.353483	1094.69241	0.44825	0.0002458	0.080793	4.4303E-05	0.52904	0.0002901	548.3535115392673	51.681	0.94009	51.681	51.327	52.267	0					102	34	4	0	0	0	0.0041491	3	12073	12026;12073;12115		93.166	31.564	1	4667800			39570	4844	22989	22990	48112;48113;48114	48113					0.14885392767905614
RPSLRLQLL	9	Unmodified	_RPSLRLQLL_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3536987304688	2	548.353483	1094.69241	0.51772	0.00028389	0.02231	1.2234E-05	0.54003	0.00029612	548.3534623337622	51.653	0.84885	51.7	51.401	52.25	0.046577					95	30	4	0	0	0	0.013404	3	12067	12023;12067;12111		74.2	21.363	1	4728100			39571	4844	22989	22990	48115;48116;48117	48116					0.14885392767905614
RPSLRLQLL	9	Unmodified	_RPSLRLQLL_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3538208007812	2	548.353483	1094.69241	0.36795	0.00020177	0.14398	7.8953E-05	0.51194	0.00028072	548.35356816398	51.771	0.96689	51.781	51.402	52.369	0.0095634					104	35	4	0	0	0	0.015924	3	12105	12057;12105;12154		70.332	22.738	1	4832600			39572	4844	22989	22990	48118;48119;48120	48119					0.14885392767905614
RPSMEESRQL	10	Unmodified	_RPSMEESRQL_					0	0	0			REV__ENST00000442383.1_1_20:42839978-42853586:+|nuORF	REV__ENST00000442383.1_1_20:42839978-42853586:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.91162109375	3	411.539916	1231.59792	-0.55161	-0.00022701	2.0794	0.00085577	1.5278	0.00062876	411.54077649118807	34.589	0.41473	34.666	34.505	34.92	0.077377					20	14	2	0	0	0	0.31847	1	6799	6799		3.5871	2.1319	1	78206	+		39573	21055	22990	22991	48121	48121					-0.00861533836405215
RPSNPDLTR	9	Unmodified	_RPSNPDLTR_					0	0	0			REV__ENSG00000197838|ENST00000330436|CYP2A13	REV__ENSG00000197838|ENST00000330436|CYP2A13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.283447265625	2	528.283254	1054.55196	0.36531	0.00019299	0.14994	7.9211E-05	0.51525	0.0002722	528.2832736558253	16.24	0.74105	16.24	16.008	16.749	0					55	25	4	0	0	0	0.31763	1	1273	1273		6.2058	0.9089	1	359800	+		39574	18770	22991	22992	48122	48122					0.026861890436293834
RPSPALPLL	9	Unmodified	_RPSPALPLL_					0	0	0			REV__ENST00000458350.7_1_5:81267901-81272033:+|nuORF	REV__ENST00000458350.7_1_5:81267901-81272033:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.3030090332031	2	482.302927	962.591301	0.61767	0.0002979	0.1436	6.9261E-05	0.76127	0.00036716	482.3029465235265	50.816	0.65352	50.816	50.544	51.198	0					69	23	4	0	0	0	0.088443	2	11788	11788;11838		39.95	3.8227	1	2117800	+		39575	20183	22992	22993	48123;48124	48123					0.10850941065177722
RPSPALPLL	9	Unmodified	_RPSPALPLL_					0	0	0			REV__ENST00000458350.7_1_5:81267901-81272033:+|nuORF	REV__ENST00000458350.7_1_5:81267901-81272033:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.3031921386719	2	482.302927	962.591301	0.57685	0.00027822	0.22328	0.00010769	0.80013	0.0003859	482.30291329079876	50.791	0.56708	50.837	50.551	51.118	0.046574					64	20	4	0	0	0	0.10059	1	11821	11821		38.176	6.9072	1	2507500	+		39576	20183	22992	22993	48125	48125					0.10850941065177722
RPSPALPLL	9	Unmodified	_RPSPALPLL_					0	0	0			REV__ENST00000458350.7_1_5:81267901-81272033:+|nuORF	REV__ENST00000458350.7_1_5:81267901-81272033:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.3031311035156	2	482.302927	962.591301	0.70796	0.00034145	0.13036	6.2874E-05	0.83832	0.00040432	482.30286207280335	50.804	0.69268	50.813	50.402	51.094	0.0095634					78	25	4	0	0	0	0.069366	1	11803	11803		45.7	5.7499	1	2573400	+		39577	20183	22992	22993	48126	48126					0.10850941065177722
RPSPGGHERKL	11	Unmodified	_RPSPGGHERKL_					0	0	0		ENSG00000176046|ENST00000324873|NUPR1;nc|ENSG00000176046|O60356-2|NUPR1	ENSG00000176046|ENST00000324873|NUPR1	ENSG00000176046|ENST00000324873|NUPR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.89849853515625	3	411.898544	1232.6738	-0.20026	-8.2486E-05	-0.31012	-0.00012774	-0.51038	-0.00021022	411.898431941468	13.901	0.4379	13.835	13.632	14.07	-0.066067					40	14	4	0	0	0	0.33146	1	553	553		6.6235	1.7264	1	207800			39578	6899	22993	22994	48127	48127					0.06677231126036531
RPSPGGHERKL	11	Unmodified	_RPSPGGHERKL_					0	0	0		ENSG00000176046|ENST00000324873|NUPR1;nc|ENSG00000176046|O60356-2|NUPR1	ENSG00000176046|ENST00000324873|NUPR1	ENSG00000176046|ENST00000324873|NUPR1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	411.898544	1232.6738	-0.35919	-0.00014795	3.3047	0.0013612	2.9456	0.0012133	411.8983713669056	14.19	0.082767	14.19	14.138	14.221	0	0.17789	0.0044601	NaN	6.6235	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8120.8			39579	6899	22993	22994							0.06677231126036531
RPSPTVTW	8	Unmodified	_RPSPTVTW_					0	0	0		ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	ENSG00000152580|ENST00000282466|IGSF10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7369384765625	2	472.253434	942.492316	-1.1076	-0.00052307	-0.34125	-0.00016116	-1.4489	-0.00068423	472.25315093708673	35.026	0.60545	35.102	34.713	35.318	0.075306					38	21	2	0	0	0	0.33993	1	6929	6929		16.942	1.0951	1	170510			39580	5026	22994	22995	48128	48128					0.018769181002767255
RPSQFRVS	8	Unmodified	_RPSQFRVS_					0	0	0		nc|ENSG00000153563|P01732-2|CD8A;ENSG00000153563|ENST00000283635|CD8A;nc|ENSG00000153563|P01732-3|CD8A	nc|ENSG00000153563|P01732-2|CD8A	nc|ENSG00000153563|P01732-2|CD8A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7696533203125	2	488.769783	975.525013	0.13564	6.6296E-05	-0.60764	-0.000297	-0.472	-0.0002307	488.7694928438527	23.307	1.2974	23.22	22.54	23.837	-0.087608					82	45	3	0	0	0	0.3415	1	3452	3452		13.042	4.4492	1	374650			39581	5081	22995	22996	48129	48129					0.03627125223147232
RPSQMRKLF	9	Unmodified	_RPSQMRKLF_					0	0	0		nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1	nc|ENSG00000091592|Q9C000-3|NLRP1	nc|ENSG00000091592|Q9C000-3|NLRP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7927856445312	2	581.829317	1161.64408	0.10568	6.1486E-05	-1.2253	-0.0007129	-1.1196	-0.00065141	581.8284391231425	18.911	0.55515	18.794	18.501	19.056	-0.11739					31	19	2	0	0	0	0.26168	1	2100	2100		1.8442	0.51471	1	44792			39582	1407	22996	22997	48130	48130					0.0697257585634361
RPSQMRKLF	9	Unmodified	_RPSQMRKLF_					0	0	0		nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1	nc|ENSG00000091592|Q9C000-3|NLRP1	nc|ENSG00000091592|Q9C000-3|NLRP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	581.829317	1161.64408	-0.0066276	-3.8561E-06	-1.1511	-0.00066973	-1.1577	-0.00067359	581.8285813064485	18.843	0.52822	18.785	18.458	18.986	-0.058174	-0.00044152	5.1959E-05	NaN	1.8442	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53085			39583	1407	22996	22997							0.0697257585634361
RPSQNLLQL	9	Unmodified	_RPSQNLLQL_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25;ENST00000594998.1_1_19:50338170-50339752:+|nuORF	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.8114013671875	2	534.811648	1067.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.719	1	48.719	48.219	49.219	0								0	0	0	0.047655	1	11170	11170		61.602	8.1979	1				39584	1941	22997	22998	48131	48131					0.07764236600178265
RPSQNLLQL	9	Unmodified	_RPSQNLLQL_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25;ENST00000594998.1_1_19:50338170-50339752:+|nuORF	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.8114624023438	2	534.811648	1067.60874	0.6165	0.00032971	-0.69953	-0.00037412	-0.083033	-4.4407E-05	534.8111728149627	48.569	0.59812	48.614	48.363	48.961	0.044922					62	21	4	0	0	0	0.032589	3	11152	11101;11152;11204		59.368	13.629	1	2070500			39585	1941	22997	22998	48132;48133;48134	48133					0.07764236600178265
RPSQNLLQL	9	Unmodified	_RPSQNLLQL_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25;ENST00000594998.1_1_19:50338170-50339752:+|nuORF	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.8113403320312	2	534.811648	1067.60874	0.60197	0.00032194	-0.72549	-0.000388	-0.12352	-6.6059E-05	534.8110682728594	48.464	0.59592	48.508	48.294	48.89	0.043324					54	21	4	0	0	0	0.032589	1	11122	11122		59.368	13.629	1	2030000			39586	1941	22997	22998	48135	48135					0.07764236600178265
RPSQNLLQL	9	Unmodified	_RPSQNLLQL_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25;ENST00000594998.1_1_19:50338170-50339752:+|nuORF	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	534.811648	1067.60874	0.60197	0.00032194	-0.72549	-0.000388	-0.12352	-6.6059E-05	534.8110682728594	48.464	0.59592	48.508	48.294	48.89	0.043324	-0.053297	-1.3758E-05	NaN	59.368	54	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2030000			39587	1941	22997	22998							0.07764236600178265
RPSQPTQET	9	Unmodified	_RPSQPTQET_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145439826-145440208:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8012084960938	2	522.259445	1042.50434	0.14302	7.4691E-05	1.0437	0.00054507	1.1867	0.00061976	522.259663418432	14.061	0.76424	14.061	13.767	14.531	0					46	26	3	0	0	0	0.21026	1	615	615		28.495	6.9575	1	323180			39588	8673	22998	22999	48136	48136					-0.015215099471788562
RPSQPTQET	9	Unmodified	_RPSQPTQET_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145439826-145440208:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2595825195312	2	522.259445	1042.50434	0.073934	3.8613E-05	0.62083	0.00032423	0.69476	0.00036285	522.2596295069002	14.177	0.77761	14.072	13.738	14.516	-0.10466					47	26	3	0	0	0	0.073988	1	673	673		43.982	22.445	1	362490			39589	8673	22998	22999	48137	48137					-0.015215099471788562
RPSQPTQET	9	Unmodified	_RPSQPTQET_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145439826-145440208:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.80126953125	2	522.259445	1042.50434	0.07619	3.9791E-05	1.0168	0.00053104	1.093	0.00057083	522.2596499025846	14.152	0.64899	14.086	13.861	14.51	-0.066068					38	22	2	0	0	0	0.18479	1	639	639		34.932	13.395	1	331230			39590	8673	22998	22999	48138	48138					-0.015215099471788562
RPSQQDECS	9	Unmodified	_RPSQQDECS_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2200317382812	2	525.219462	1048.42437	0.60399	0.00031723	0.79536	0.00041774	1.3994	0.00073497	525.2198615616912	21.237	0.40653	21.237	21.052	21.459	0					20	13	2	0	0	0	0.34809	1	2806	2806		1.6526	0	1	37482			39591	8647	22999	23000	48139	48139					-0.09790319612693565
RPSQQDECS	9	Unmodified	_RPSQQDECS_					0	0	0		nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	nc|ENSG00000259207|P05106-2|ITGB3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	525.219462	1048.42437	0.58769	0.00030866	1.0567	0.00055499	1.6444	0.00086365	525.219803873791	21.256	0.48214	21.203	21.062	21.544	-0.052912	-0.017119	0.00012593	NaN	1.6526	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41388			39592	8647	22999	23000							-0.09790319612693565
RPSQTQVL	8	Unmodified	_RPSQTQVL_					0	0	0		nc|ENSG00000177614|Q8N414-2|PGBD5;ENSG00000177614|ENST00000391860|PGBD5	nc|ENSG00000177614|Q8N414-2|PGBD5	nc|ENSG00000177614|Q8N414-2|PGBD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7534484863281	2	464.764166	927.513779	-0.10157	-4.7204E-05	-0.16701	-7.762E-05	-0.26857	-0.00012482	464.763986720181	26.529	0.65059	26.491	26.069	26.72	-0.038671					41	22	2	0	0	0	0.45015	1	4437	4437		5.7604	0.028577	1	158960			39593	7002	23000	23001	48140	48140					0.047123031289856954
RPSQTQVL	8	Unmodified	_RPSQTQVL_					0	0	0		nc|ENSG00000177614|Q8N414-2|PGBD5;ENSG00000177614|ENST00000391860|PGBD5	nc|ENSG00000177614|Q8N414-2|PGBD5	nc|ENSG00000177614|Q8N414-2|PGBD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.75335693359375	2	464.764166	927.513779	0.28419	0.00013208	-0.57128	-0.00026551	-0.28709	-0.00013343	464.7637886237111	26.521	0.71896	26.499	26.043	26.762	-0.022236					44	24	2	0	0	0	0.45015	1	4448	4448		5.7604	0.52976	1	150320			39594	7002	23000	23001	48141	48141					0.047123031289856954
RPSRRGAL	8	Unmodified	_RPSRRGAL_					0	0	0		ENST00000317449.4_1_11:62455042-62455312:-|nuORF	ENST00000317449.4_1_11:62455042-62455312:-|nuORF	ENST00000317449.4_1_11:62455042-62455312:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7665710449219	2	456.777942	911.541332	0.12112	5.5327E-05	2.0727	0.00094674	2.1938	0.0010021	456.77916586662377	16.572	0.60859	16.509	16.121	16.729	-0.062534					46	20	3	0	0	0	0.43302	1	1276	1276		11.64	3.7301	1	170130			39595	9363	23001	23002	48142	48142					0.08202251179898212
RPSRRPRRRPR	11	Unmodified	_RPSRRPRRRPR_					0	0	0			REV__ENST00000513185.1_1_5:98109622-98109781:+|nuORF	REV__ENST00000513185.1_1_5:98109622-98109781:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.9750061035156	3	497.310164	1488.90866	0.30135	0.00014987	-1.4955	-0.00074371	-1.1941	-0.00059384	497.3092927309326	104.16	0.064636	104.16	104.11	104.17	0.0011444					9	6	2	0	0	0	0.33347	1	27687	27687		0.45452	0	1	432680	+		39596	21819	23002	23003	48143	48143					0.18376386444947457
RPSSDLRDHP	10	Unmodified	_RPSSDLRDHP_					0	0	0		ENST00000424358.1_1_20:33865174-33865489:-|nuORF;ENST00000435366.2_2_20:33865064-33865489:-|nuORF	ENST00000424358.1_1_20:33865174-33865489:-|nuORF	ENST00000424358.1_1_20:33865174-33865489:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.7952880859375	2	590.296893	1178.57923	0.043376	2.5605E-05	3.755	0.0022166	3.7984	0.0022422	590.8013149688132	14.313	0.55111	14.246	14.037	14.588	-0.066068					51	19	4	0	0	0	0.32054	1	720	720		3.2813	0.28607	1	131340			39597	10396	23003	23004	48144	48144					-0.002913274159482171
RPSSPVRL	8	Unmodified	_RPSSPVRL_					0	0	0			REV__ENST00000397389.6_1_12:123459369-123459579:+|nuORF	REV__ENST00000397389.6_1_12:123459369-123459579:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.27447509765625	2	456.274701	910.534849	0.26443	0.00012065	-1.2543	-0.00057231	-0.98989	-0.00045166	456.2743236666495	21.154	2.0563	21.101	20.695	22.752	-0.052912					195	72	5	0	0	0	0.44885	1	3041	3041		6.2058	1.4498	1	8977900	+		39598	20671	23004	23005	48145	48145					0.07600313228522282
RPSSSRSYV	9	Unmodified	_RPSSSRSYV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7699584960938	2	519.76998	1037.52541	0.13104	6.8111E-05	-0.13803	-7.1743E-05	-0.0069876	-3.6319E-06	519.7699106048201	15.261	0.66753	15.261	15.012	15.679	0					57	22	3	0	0	0	0.07848	2	955	955;1007		42.312	19.576	1	886350			39599	537	23005	23006	48146;48147	48146					0.008145001523189421
RPSSSRSYV	9	Unmodified	_RPSSSRSYV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7699584960938	2	519.76998	1037.52541	0.13993	7.2734E-05	-0.078855	-4.0986E-05	0.06108	3.1747E-05	519.7699222829795	15.399	0.6015	15.289	15.038	15.64	-0.10981					53	20	3	0	0	0	0.01909	2	1006	1006;1052		65.474	36.392	1	935240			39600	537	23005	23006	48148;48149	48148					0.008145001523189421
RPSSSRSYV	9	Unmodified	_RPSSSRSYV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7698974609375	2	519.76998	1037.52541	0.066077	3.4345E-05	0.011399	5.9248E-06	0.077475	4.0269E-05	519.7699483077416	15.407	0.4768	15.343	15.128	15.605	-0.064413					42	15	3	0	0	0	0.013404	1	1006	1006		74.2	38.073	1	1129100			39601	537	23005	23006	48150	48150					0.008145001523189421
RPSSSRSYVTT	11	Unmodified	_RPSSSRSYVTT_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.8177490234375	2	620.817658	1239.62076	0.25928	0.00016096	-0.15294	-9.4949E-05	0.10633	6.6014E-05	620.8176002581661	17.168	1.1818	17.168	16.895	18.077	0					132	40	5	0	0	0	0.00098112	4	1549	1505;1549;1591;1639		112.95	75.871	1	4116300			39602	537	23006	23007	48151;48152;48153;48154	48152					0.010538085527059593
RPSSSRSYVTT	11	Unmodified	_RPSSSRSYVTT_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.2148742675781	3	414.214198	1239.62076	-0.049589	-2.0541E-05	-0.33696	-0.00013958	-0.38655	-0.00016012	414.214710139698	17.169	1.9904	17.169	16.72	18.71	0					231	68	7	0	0	0	0.14667	3	1560	1515;1560;1604		35.996	14.08	1	11830000			39603	537	23006	23007	48155;48156;48157	48156					0.010538085527059593
RPSSSRSYVTT	11	Unmodified	_RPSSSRSYVTT_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.8177490234375	2	620.817658	1239.62076	-0.097401	-6.0468E-05	0.14619	9.076E-05	0.048793	3.0291E-05	620.8177754180732	17.39	1.3301	17.273	16.937	18.267	-0.11739					159	46	5	0	0	0	0.0015263	4	1657	1560;1611;1657;1705		96.034	65.603	1	3614800			39604	537	23006	23007	48158;48159;48160;48161	48160					0.010538085527059593
RPSSSRSYVTT	11	Unmodified	_RPSSSRSYVTT_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2149353027344	3	414.214198	1239.62076	0.10429	4.3197E-05	-0.43986	-0.0001822	-0.33557	-0.000139	414.21468865602947	17.389	1.7029	17.271	16.828	18.531	-0.11739					216	59	6	0	0	0	0.13599	4	1618	1618;1665;1714;1760		36.955	17.811	1	11457000			39605	537	23006	23007	48162;48163;48164;48165	48162					0.010538085527059593
RPSSSRSYVTT	11	Unmodified	_RPSSSRSYVTT_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.8177490234375	2	620.817658	1239.62076	0.23097	0.00014339	-0.25608	-0.00015898	-0.025118	-1.5594E-05	620.8175469668175	17.279	1.3956	17.218	16.887	18.283	-0.060429					154	49	5	0	0	0	0.0043859	5	1611	1520;1565;1611;1654;1698		94.801	79.47	1	3090000			39606	537	23006	23007	48166;48167;48168;48169;48170	48168					0.010538085527059593
RPSSSRSYVTT	11	Unmodified	_RPSSSRSYVTT_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.2148742675781	3	414.214198	1239.62076	0.26806	0.00011104	-0.61831	-0.00025611	-0.35024	-0.00014508	414.21460327939064	17.258	2.1742	17.198	16.81	18.984	-0.060429					247	77	6	0	0	0	0.082958	3	1575	1527;1575;1620		43.713	21.604	1	10186000			39607	537	23006	23007	48171;48172;48173	48172					0.010538085527059593
RPSSTSSASAL	11	Unmodified	_RPSSTSSASAL_					0	0	0		ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2732543945312	2	532.272552	1062.53055	0.51724	0.00027531	0.53318	0.0002838	1.0504	0.00055911	532.2728284578527	20.318	0.50075	20.208	19.906	20.407	-0.11003					27	18	2	0	0	0	0.35271	1	2496	2496		17.443	17.443	1	205310			39608	2555	23007	23008	48174	48174					0.0017875922428629565
RPSSTSSASAL	11	Unmodified	_RPSSTSSASAL_					0	0	0		ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.27294921875	2	532.272552	1062.53055	0.74904	0.00039869	0.12915	6.8745E-05	0.87819	0.00046744	532.2725664098695	20.208	0.4745	20.154	19.879	20.353	-0.053993					27	17	2	0	0	0	0.35939	1	2457	2457		16.566	0.71869	1	117320			39609	2555	23007	23008	48175	48175					0.0017875922428629565
RPSSVLRTL	9	Unmodified	_RPSSVLRTL_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8143920898438	2	514.81419	1027.61383	0.16577	8.534E-05	-0.20686	-0.00010649	-0.041086	-2.1152E-05	514.8143086763689	31.168	0.79767	31.168	30.838	31.636	0					125	28	6	0	0	0	0.0032746	2	5818	5767;5818		100.09	28.168	1	2566200			39610	5969	23008	23009	48176;48177	48177					0.10112540462819197
RPSSVLRTL	9	Unmodified	_RPSSVLRTL_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.8143920898438	2	514.81419	1027.61383	0.00010836	5.5785E-08	-0.20586	-0.00010598	-0.20575	-0.00010592	514.8143850920028	31.145	1.3149	31.184	30.364	31.679	0.038372					140	46	6	0	0	0	0.0040516	3	5767	5767;5819;5879		93.938	30.689	1	2783700			39611	5969	23008	23009	48178;48179;48180	48178					0.10112540462819197
RPSSVLRTL	9	Unmodified	_RPSSVLRTL_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.8145141601562	2	514.81419	1027.61383	0.13002	6.6936E-05	-0.29322	-0.00015095	-0.1632	-8.4017E-05	514.8143491832913	31.11	0.78913	31.151	30.798	31.587	0.040991					128	28	6	0	0	0	0.0040516	2	5800	5754;5800		93.938	31.365	1	2962300			39612	5969	23008	23009	48181;48182	48182					0.10112540462819197
RPSTQNYTEI	10	Unmodified	_RPSTQNYTEI_					0	0	0			REV__ENSG00000102245|ENST00000370629|CD40LG	REV__ENSG00000102245|ENST00000370629|CD40LG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.7990112304688	2	604.798934	1207.58332	0.35679	0.00021579	0.34337	0.00020767	0.70016	0.00042346	604.7990356374756	28.516	0.47945	28.511	28.306	28.785	-0.0042572					25	16	2	0	0	0	0.14021	1	4976	4976		39.95	0	1	197940	+		39613	14314	23009	23010	48183	48183					-0.012172827129006691
RPSTQNYTEI	10	Unmodified	_RPSTQNYTEI_					0	0	0			REV__ENSG00000102245|ENST00000370629|CD40LG	REV__ENSG00000102245|ENST00000370629|CD40LG	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	604.798934	1207.58332	0.35679	0.00021579	0.34337	0.00020767	0.70016	0.00042346	604.7990356374756	28.516	0.47945	28.511	28.306	28.785	-0.0042572	-0.023396	0.00018036	NaN	39.95	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197940	+		39614	14314	23009	23010							-0.012172827129006691
RPSTRIQQQL	10	Unmodified	_RPSTRIQQQL_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5699462890625	3	409.570316	1225.68912	-0.2139	-8.7606E-05	0.3093	0.00012668	0.095407	3.9076E-05	409.5703948428025	25.713	0.6938	25.713	25.384	26.078	0					68	23	4	0	0	0	0.21126	2	4095	4095;4191		27.088	4.1938	1	823040			39615	1644	23010	23011	48184;48185	48184					0.08530097923221547
RPSTRIQQQL	10	Unmodified	_RPSTRIQQQL_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5698547363281	3	409.570316	1225.68912	-0.18658	-7.6416E-05	0.36945	0.00015132	0.18287	7.49E-05	409.5703999218272	25.723	0.73628	25.684	25.442	26.178	-0.03867					65	25	4	0	0	0	0.24437	3	4112	4112;4156;4209		20.871	8.6964	1	830250			39616	1644	23010	23011	48186;48187;48188	48186					0.08530097923221547
RPSTRIQQQL	10	Unmodified	_RPSTRIQQQL_					0	0	0		ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	ENSG00000100906|ENST00000216797|NFKBIA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5699768066406	3	409.570316	1225.68912	-0.12862	-5.2679E-05	0.33297	0.00013638	0.20435	8.3697E-05	409.57039785247366	25.777	0.82274	25.754	25.444	26.266	-0.022236					71	29	4	0	0	0	0.21126	2	4118	4118;4166		27.088	3.4053	1	860910			39617	1644	23010	23011	48189;48190	48189					0.08530097923221547
RPSTSRSL	8	Unmodified	_RPSTSRSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.25384521484375	2	452.253966	902.493378	-0.13647	-6.1719E-05	-0.63554	-0.00028743	-0.77201	-0.00034915	452.2541584027826	14.261	1.569	14.261	14.055	15.624	0					132	54	5	0	0	0	0.048928	3	650	650;690;734		78.728	22.551	1	10139000			39618	537	23011	23012	48191;48192;48193	48191					0.03823132469176471
RPSTSRSL	8	Unmodified	_RPSTSRSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2542724609375	2	452.253966	902.493378	-0.13089	-5.9197E-05	-0.60711	-0.00027457	-0.73801	-0.00033377	452.25413695956246	14.396	1.1304	14.291	14.079	15.209	-0.10466					121	39	5	0	0	0	0.040925	3	726	680;726;771		82.529	22.661	1	8941800			39619	537	23011	23012	48194;48195;48196	48195					0.03823132469176471
RPSTSRSL	8	Unmodified	_RPSTSRSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2540283203125	2	452.253966	902.493378	-0.14616	-6.6101E-05	-0.59439	-0.00026882	-0.74055	-0.00033492	452.2540988812915	14.371	1.7644	14.304	14.07	15.834	-0.066068					149	61	5	0	0	0	0.029711	3	670	670;715;764		88.954	23.719	1	7954800			39620	537	23011	23012	48197;48198;48199	48197					0.03823132469176471
RPSTSRSLYA	10	Unmodified	_RPSTSRSLYA_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.3043823242188	2	569.304187	1136.59382	0.16303	9.2815E-05	0.047788	2.7206E-05	0.21082	0.00012002	569.304112216067	19.85	0.54487	19.85	19.547	20.092	0					48	19	3	0	0	0	0.33104	2	2333	2333;2383		16.149	3.3286	1	304530			39621	537	23012	23013	48200;48201	48200					0.03098744732187697
RPSTSRSLYA	10	Unmodified	_RPSTSRSLYA_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3041381835938	2	569.304187	1136.59382	0.44937	0.00025583	-0.43603	-0.00024823	0.013339	7.5941E-06	569.3038763937842	19.996	0.56981	19.88	19.612	20.182	-0.11592					52	19	4	0	0	0	0.30872	2	2426	2384;2426		19.362	4.1135	1	315540			39622	537	23012	23013	48202;48203	48203					0.03098744732187697
RPSTSRSLYA	10	Unmodified	_RPSTSRSLYA_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.3040161132812	2	569.304187	1136.59382	0.42748	0.00024336	-0.30661	-0.00017455	0.12087	6.881E-05	569.3039369504843	19.923	0.60358	19.867	19.595	20.199	-0.055693					49	21	3	0	0	0	0.30872	2	2396	2349;2396		19.362	5.7709	1	308180			39623	537	23012	23013	48204;48205	48205					0.03098744732187697
RPSTSTAVF	9	Unmodified	_RPSTSTAVF_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.25634765625	2	483.256174	964.497795	0.0097426	4.7082E-06	0.70581	0.00034109	0.71555	0.0003458	483.25647096903305	31.419	0.73806	31.419	31.007	31.745	0					57	26	4	0	0	0	0.17277	1	5871	5871		27.629	9.4938	1	764880			39624	631	23013	23014	48206	48206					0.014125968920893683
RPSTSTAVF	9	Unmodified	_RPSTSTAVF_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2567443847656	2	483.256174	964.497795	0.24352	0.00011768	0.5148	0.00024878	0.75832	0.00036646	483.2563357987617	31.333	0.81341	31.374	30.988	31.802	0.040991					60	29	3	0	0	0	0.21447	1	5835	5835		21.537	5.6898	1	729590			39625	631	23013	23014	48207	48207					0.014125968920893683
RPSTSTAVF	9	Unmodified	_RPSTSTAVF_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	483.256174	964.497795	0.0059079	2.855E-06	0.68941	0.00033316	0.69532	0.00033602	483.25642082908263	31.413	0.52176	31.455	31.13	31.652	0.042366	0.039291	5.1983E-05	NaN	27.629	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	835340			39626	631	23013	23014							0.014125968920893683
RPSVRSVL	8	Unmodified	_RPSVRSVL_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000480964.5_1_7:44801441-44805210:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.28253173828125	2	457.282526	912.550499	0.23983	0.00010967	-0.024117	-1.1028E-05	0.21571	9.864E-05	457.2823938372185	29.064	0.95861	29.064	28.76	29.718	0					85	34	4	0	0	0	0.18459	3	5190	5132;5140;5190		45.7	11.597	1	1851000			39627	3048	23014	23015	48208;48209;48210	48210					0.09072599745559273
RPSVRSVL	8	Unmodified	_RPSVRSVL_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000480964.5_1_7:44801441-44805210:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2825622558594	2	457.282526	912.550499	0.13808	6.314E-05	0.10902	4.9855E-05	0.2471	0.00011299	457.2824527703404	29.026	1.005	29.038	28.769	29.774	0.012266					83	34	4	0	0	0	0.16041	2	5135	5135;5176		49.933	11.292	1	2013100			39628	3048	23014	23015	48211;48212	48211					0.09072599745559273
RPSVRSVL	8	Unmodified	_RPSVRSVL_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000480964.5_1_7:44801441-44805210:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2825622558594	2	457.282526	912.550499	0.019472	8.9042E-06	0.17579	8.0387E-05	0.19526	8.9291E-05	457.2824855993874	29.054	0.98756	29.067	28.758	29.745	0.013474					92	34	4	0	0	0	0.13814	2	5189	5139;5189		53.833	15.859	1	1756800			39629	3048	23014	23015	48213;48214	48214					0.09072599745559273
RPSYHLSI	8	Unmodified	_RPSYHLSI_					0	0	0		MER52A_dup623|chr7:125467694-125468854:-|4.819275525858485|0.0188931890662395|7.99|518.0|39|2|anti-sense	MER52A_dup623|chr7:125467694-125468854:-|4.819275525858485|0.0188931890662395|7.99|518.0|39|2|anti-sense	MER52A_dup623|chr7:125467694-125468854:-|4.819275525858485|0.0188931890662395|7.99|518.0|39|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.2931213378906	2	486.766709	971.518865	0.17507	8.5218E-05	0.3791	0.00018453	0.55417	0.00026975	486.7667906528645	16.117	0.40557	16.054	15.892	16.298	-0.062534					22	13	2	0	0	0	0.34337	1	1204	1204		5.2307	0.47466	1	54246			39630	12536	23015	23016	48215	48215					0.03196606991616591
RPSYYMFPRF	10	Unmodified	_RPSYYMFPRF_					0	0	0		ENSG00000237765|ENST00000422728|FAM200B	ENSG00000237765|ENST00000422728|FAM200B	ENSG00000237765|ENST00000422728|FAM200B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.9109802246094	3	455.225381	1362.65431	-0.743	-0.00033823	-0.46033	-0.00020956	-1.2033	-0.00054779	455.22527872448796	35.035	0.41433	35.11	34.963	35.377	0.075306					21	14	2	0	0	0	0.32095	1	7043	7043		3.0723	0	1	82961			39631	8507	23016	23017	48216	48216					-0.012508612091096438
RPTARAQL	8	Unmodified	_RPTARAQL_					0	0	0			REV__nc|ENSG00000198881|Q8WXK4|ASB12	REV__nc|ENSG00000198881|Q8WXK4|ASB12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7734069824219	2	456.772326	911.530098	-0.13622	-6.222E-05	1.6593	0.00075793	1.5231	0.00069571	456.7726620642811	15.553	0.26602	15.553	15.413	15.679	0					18	8	3	0	0	0	0.41087	1	1075	1075		18.146	0	1	68448	+		39632	18881	23017	23018	48217	48217					0.07079429085752054
RPTDKPLRL	9	Unmodified	_RPTDKPLRL_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3355102539062	2	548.33529	1094.65603	0.26226	0.00014381	0.13141	7.2058E-05	0.39368	0.00021587	548.3353987589409	22.416	1.2322	22.416	22.076	23.308	0					123	42	4	0	0	0	5.4465E-12	4	3126	3080;3126;3171;3214		201.57	108.92	1	3370400			39633	5239	23018	23019	48218;48219;48220;48221	48219					0.11248515871170639
RPTDKPLRL	9	Unmodified	_RPTDKPLRL_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3355102539062	2	548.33529	1094.65603	0.35858	0.00019662	-0.00825	-4.5238E-06	0.35033	0.0001921	548.3353305802906	22.487	1.3232	22.399	22.057	23.381	-0.087608					151	47	5	0	0	0	5.4465E-12	5	3160	3111;3160;3205;3255;3308		201.57	108.92	1	3296800			39634	5239	23018	23019	48222;48223;48224;48225;48226	48223					0.11248515871170639
RPTDKPLRL	9	Unmodified	_RPTDKPLRL_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3355102539062	2	548.33529	1094.65603	0.29737	0.00016306	0.031626	1.7341E-05	0.32899	0.0001804	548.3353537192706	22.528	1.3195	22.484	22.124	23.444	-0.044867					149	46	5	0	0	0	5.4465E-12	5	3196	3107;3152;3196;3244;3294		201.57	108.92	1	3062900			39635	5239	23018	23019	48227;48228;48229;48230;48231	48229					0.11248515871170639
RPTDLILS	8	Unmodified	_RPTDLILS_					0	0	0		VN1R1|p.S199Ifs*32|1|0.04|ENSG00000178201|chr19:57455891-57455891|C/-|frameshift_variant;ENSG00000178201|ENST00000321039|VN1R1	VN1R1|p.S199Ifs*32|1|0.04|ENSG00000178201|chr19:57455891-57455891|C/-|frameshift_variant	VN1R1|p.S199Ifs*32|1|0.04|ENSG00000178201|chr19:57455891-57455891|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.76861572265625	2	457.768917	913.523281	-0.13308	-6.092E-05	-0.06746	-3.0881E-05	-0.20054	-9.1802E-05	457.7690489110065	15.143	0.80645	15.079	14.618	15.424	-0.064413					53	27	3	0	0	0	0.4354	1	991	991		10.824	0	1	172400			39636	7043	23019	23020	48232	48232					0.06306071414530834
RPTDLILS	8	Unmodified	_RPTDLILS_					0	0	0		VN1R1|p.S199Ifs*32|1|0.04|ENSG00000178201|chr19:57455891-57455891|C/-|frameshift_variant;ENSG00000178201|ENST00000321039|VN1R1	VN1R1|p.S199Ifs*32|1|0.04|ENSG00000178201|chr19:57455891-57455891|C/-|frameshift_variant	VN1R1|p.S199Ifs*32|1|0.04|ENSG00000178201|chr19:57455891-57455891|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	457.768917	913.523281	-0.092962	-4.2555E-05	-0.26389	-0.0001208	-0.35685	-0.00016335	457.7689127791528	15.172	0.90058	15.063	14.535	15.436	-0.10981	-0.0079648	-8.8349E-05	NaN	10.824	67	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127970			39637	7043	23019	23020							0.06306071414530834
RPTEPMFCML	10	Unmodified	_RPTEPMFCML_					0	0	0			REV__ENSG00000136856|ENST00000373371|SLC2A8	REV__ENSG00000136856|ENST00000373371|SLC2A8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.8996887207031	3	408.857312	1223.55011	0.48204	0.00019709	0.45512	0.00018608	0.93716	0.00038316	408.8576818375291	36.397	0.45071	36.483	36.333	36.783	0.08625					22	15	3	0	0	0	0.32009	1	7474	7474		1.9064	0	1	112080	+		39638	15831	23020	23021	48233	48233					-0.05272647352444437
RPTEPMFCML	10	Unmodified	_RPTEPMFCML_					0	0	0			REV__ENSG00000136856|ENST00000373371|SLC2A8	REV__ENSG00000136856|ENST00000373371|SLC2A8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	408.857312	1223.55011	0.03063	1.2523E-05	1.7162	0.00070169	1.7468	0.00071421	408.8582271439798	36.484	0.25845	36.484	36.385	36.644	0	-0.0040458	0.000264	NaN	1.9064	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89482	+		39639	15831	23020	23021							-0.05272647352444437
RPTEPMFCML	10	Unmodified	_RPTEPMFCML_					0	0	0			REV__ENSG00000136856|ENST00000373371|SLC2A8	REV__ENSG00000136856|ENST00000373371|SLC2A8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	408.857312	1223.55011	0.20125	8.2282E-05	1.5475	0.00063271	1.7488	0.00071499	408.857960747944	36.415	0.29065	36.497	36.331	36.621	0.082355	0.0093383	5.7069E-05	NaN	1.9064	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105190	+		39640	15831	23020	23021							-0.05272647352444437
RPTFQEITSET	11	Unmodified	_RPTFQEITSET_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.9211730957031	3	436.885858	1307.63574	-0.12043	-5.2616E-05	0.009554	4.174E-06	-0.11088	-4.8442E-05	437.21975612233683	19.227	0.14539	19.112	19.031	19.177	-0.11592					7	4	2	0	0	0	0.3333	1	2152	2152		1.3296	0	1	24743			39641	7366	23021	23022	48234	48234					-0.0057674436993693234
RPTFRQMQL	9	Oxidation (M)	_RPTFRQM(Oxidation (M))QL_		RPTFRQM(1)QL		RPTFRQM(100)QL	0	0	1		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA;nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.8165893554688	2	596.816407	1191.61826	0.12381	7.3894E-05	-0.25065	-0.00014959	-0.12684	-7.5701E-05	596.8164596012222	28.029	1.3349	28.029	27.589	28.924	0					172	46	6	0	0	0	0.0031966	3	4834	4792;4834;4879		100.71	66.606	1	7748400			39642	7913;3941	23022	23023	48235;48236;48237	48236		495			0.03011681614043482
RPTFRQMQL	9	Oxidation (M)	_RPTFRQM(Oxidation (M))QL_		RPTFRQM(1)QL		RPTFRQM(94)QL	0	0	1		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA;nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.8165283203125	2	596.816407	1191.61826	0.18518	0.00011052	-0.28924	-0.00017263	-0.10406	-6.2105E-05	596.8164218162312	27.988	1.3533	27.984	27.545	28.898	-0.0042572					179	47	5	0	0	0	0.0040516	4	4782	4782;4826;4870;4911		93.938	51.844	1	6887700			39643	7913;3941	23022	23023	48238;48239;48240;48241	48238		495			0.03011681614043482
RPTFRQMQL	9	Oxidation (M)	_RPTFRQM(Oxidation (M))QL_		RPTFRQM(1)QL		RPTFRQM(78)QL	0	0	1		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA;nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.8165283203125	2	596.816407	1191.61826	0.0064212	3.8323E-06	-0.097512	-5.8197E-05	-0.091091	-5.4365E-05	596.8165116882274	27.954	1.3796	27.954	27.567	28.946	0.00046921					173	48	5	0	0	0	0.010888	3	4785	4785;4828;4869		78.06	56.314	1	6955400			39644	7913;3941	23022	23023	48242;48243;48244	48242		495			0.03011681614043482
RPTGLVVLL	9	Unmodified	_RPTGLVVLL_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;UBR3|p.G1350Afs*47|1|0.06|ENSG00000144357|chr2:170007007-170007007|G/-|frameshift_variant;nc|ENSG00000144357|Q6ZT12-2|UBR3;ENST00000430321.5_1_2:170821003-170871346:+|nuORF	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.3186340332031	2	484.318577	966.622602	0.21497	0.00010412	0.50178	0.00024302	0.71675	0.00034714	484.3187312574701	62.147	0.74397	62.147	61.836	62.58	0					59	27	3	0	0	0	0.18208	1	15295	15295		26.268	26.268	1	651780			39645	4577	23023	23024	48245	48245					0.13795514099274442
RPTGLVVLL	9	Unmodified	_RPTGLVVLL_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;UBR3|p.G1350Afs*47|1|0.06|ENSG00000144357|chr2:170007007-170007007|G/-|frameshift_variant;nc|ENSG00000144357|Q6ZT12-2|UBR3;ENST00000430321.5_1_2:170821003-170871346:+|nuORF	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.3187561035156	2	484.318577	966.622602	0.20176	9.7715E-05	0.42164	0.00020421	0.6234	0.00030192	484.3186891231303	62.091	0.66856	62.083	61.846	62.514	-0.0085564					56	24	3	0	0	0	0.18208	1	15285	15285		26.268	26.268	1	656640			39646	4577	23023	23024	48246	48246					0.13795514099274442
RPTHTYYK	8	Unmodified	_RPTHTYYK_					0	0	0			REV__nc|ENSG00000211697|A0A0B4J1U4|TRGV5	REV__nc|ENSG00000211697|A0A0B4J1U4|TRGV5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.746826171875	2	533.277441	1064.54033	0.16249	8.6655E-05	-1.9885	-0.0010604	-1.826	-0.00097377	533.2757777204355	13.588	0.25632	13.588	13.457	13.714	0					10	8	2	0	0	0	0.34408	1	493	493		2.3027	0.24298	1	18338	+		39647	23179	23024	23025	48247	48247					0.01063992020317528
RPTKLKSLLRL	11	Unmodified	_RPTKLKSLLRL_					0	0	0		ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-2|OASL;nc|ENSG00000135114|Q15646-3|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.91009521484375	3	442.297756	1323.87144	-1.2047	-0.00053285	0.41711	0.00018449	-0.78763	-0.00034837	442.63225899437754	34.954	0.52833	34.954	34.672	35.2	0					27	18	2	0	0	0	0.33189	1	6975	6975		3.5927	0	1	125380			39648	3845	23025	23026	48248	48248					0.22245857335974506
RPTKLKSLLRL	11	Unmodified	_RPTKLKSLLRL_					0	0	0		ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-2|OASL;nc|ENSG00000135114|Q15646-3|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.244384765625	3	442.297756	1323.87144	-1.3322	-0.00058925	0.89034	0.00039379	-0.4419	-0.00019545	442.2981265888447	34.874	0.54982	34.949	34.685	35.234	0.075306					37	19	3	0	0	0	0.33195	1	6930	6930		6.3051	0	1	152820			39649	3845	23025	23026	48249	48249					0.22245857335974506
RPTKLKSLLRL	11	Unmodified	_RPTKLKSLLRL_					0	0	0		ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-2|OASL;nc|ENSG00000135114|Q15646-3|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2444763183594	3	442.297756	1323.87144	-0.77348	-0.00034211	0.25317	0.00011197	-0.52031	-0.00023013	442.2978440767451	34.817	0.46251	34.894	34.704	35.167	0.077377					29	16	2	0	0	0	0.32342	1	6934	6934		22.486	0	1	162420			39650	3845	23025	23026	48250	48250					0.22245857335974506
RPTKMLALT	9	Unmodified	_RPTKMLALT_					0	0	0			REV__nc|ENSG00000198598|Q9ULZ9-2|MMP17	REV__nc|ENSG00000198598|Q9ULZ9-2|MMP17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2850952148438	2	515.807519	1029.60049	-0.10947	-5.6467E-05	2.1784	0.0011236	2.0689	0.0010671	516.3084846898762	27.595	0.49276	27.583	27.344	27.837	-0.011562					40	16	4	0	0	0	0.25706	1	4730	4730		6.7232	0.51738	1	140270	+		39651	18837	23026	23027	48251	48251					0.08686966359186954
RPTLPVGSL	9	Unmodified	_RPTLPVGSL_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.28460693359375	2	470.284734	938.554916	0.26822	0.00012614	-0.32731	-0.00015393	-0.059088	-2.7788E-05	470.2844365912705	48.366	0.73644	48.366	48.012	48.749	0					54	25	3	0	0	0	0.064268	1	11041	11041		47.594	14.809	1	818640			39652	5536	23027	23028	48252	48252					0.08318064168486217
RPTLPVGSL	9	Unmodified	_RPTLPVGSL_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.28466796875	2	470.284734	938.554916	0.51214	0.00024085	-0.30114	-0.00014162	0.21099	9.9226E-05	470.28450999626995	48.329	0.77633	48.377	48.022	48.799	0.04752					60	28	3	0	0	0	0.026579	1	11052	11052		61.602	17.744	1	781450			39653	5536	23027	23028	48253	48253					0.08318064168486217
RPTLPVGSL	9	Unmodified	_RPTLPVGSL_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.28497314453125	2	470.284734	938.554916	0.44489	0.00020922	-0.45415	-0.00021358	-0.0092645	-4.357E-06	470.2844526940573	48.254	0.68429	48.297	48.011	48.695	0.04332					56	25	3	0	0	0	0.048637	1	11027	11027		53.404	17.277	1	750330			39654	5536	23027	23028	48254	48254					0.08318064168486217
RPTLPVKSL	9	Unmodified	_RPTLPVKSL_					0	0	0		nc|ENSG00000055070|Q7Z422-2|SZRD1;nc|ENSG00000055070|Q7Z422-4|SZRD1;nc|ENSG00000055070|Q7Z422-3|SZRD1;nc|ENSG00000055070|Q7Z422-5|SZRD1;ENSG00000055070|ENST00000401088|SZRD1;ENST00000472461.1_1_1:16694381-16721632:+|nuORF	nc|ENSG00000055070|Q7Z422-2|SZRD1	nc|ENSG00000055070|Q7Z422-2|SZRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8218078613281	2	505.821484	1009.62842	0.4229	0.00021391	0.17134	8.6668E-05	0.59424	0.00030058	505.82146065211913	36.298	1.2196	36.298	35.932	37.152	0					99	43	4	0	0	0	0.0047555	3	7312	7312;7361;7414		88.364	40.615	1	2091600			39655	698	23028	23029	48255;48256;48257	48255					0.12398612610945747
RPTLPVKSL	9	Unmodified	_RPTLPVKSL_					0	0	0		nc|ENSG00000055070|Q7Z422-2|SZRD1;nc|ENSG00000055070|Q7Z422-4|SZRD1;nc|ENSG00000055070|Q7Z422-3|SZRD1;nc|ENSG00000055070|Q7Z422-5|SZRD1;ENSG00000055070|ENST00000401088|SZRD1;ENST00000472461.1_1_1:16694381-16721632:+|nuORF	nc|ENSG00000055070|Q7Z422-2|SZRD1	nc|ENSG00000055070|Q7Z422-2|SZRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.821533203125	2	505.821484	1009.62842	0.45286	0.00022907	0.15866	8.0254E-05	0.61152	0.00030932	505.82138361891043	36.196	1.0176	36.278	35.874	36.891	0.082355					93	36	3	0	0	0	0.0066776	3	7272	7272;7321;7375		84.522	36.774	1	2160600			39656	698	23028	23029	48258;48259;48260	48258					0.12398612610945747
RPTLPVKSL	9	Unmodified	_RPTLPVKSL_					0	0	0		nc|ENSG00000055070|Q7Z422-2|SZRD1;nc|ENSG00000055070|Q7Z422-4|SZRD1;nc|ENSG00000055070|Q7Z422-3|SZRD1;nc|ENSG00000055070|Q7Z422-5|SZRD1;ENSG00000055070|ENST00000401088|SZRD1;ENST00000472461.1_1_1:16694381-16721632:+|nuORF	nc|ENSG00000055070|Q7Z422-2|SZRD1	nc|ENSG00000055070|Q7Z422-2|SZRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.82177734375	2	505.821484	1009.62842	0.61436	0.00031075	-0.036736	-1.8582E-05	0.57762	0.00029217	505.82132225287967	36.152	1.0999	36.239	35.818	36.918	0.08625					97	39	3	0	0	0	0.0099976	3	7296	7248;7296;7346		79.427	39.477	1	2127900			39657	698	23028	23029	48261;48262;48263	48262					0.12398612610945747
RPTLRERNAL	10	Unmodified	_RPTLRERNAL_					0	0	0		ENSG00000184887|ENST00000392554|BTBD6;nc|ENSG00000184887|Q96KE9-1|BTBD6	ENSG00000184887|ENST00000392554|BTBD6	ENSG00000184887|ENST00000392554|BTBD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.8877868652344	3	409.242311	1224.7051	-0.18193	-7.4455E-05	0.099559	4.0744E-05	-0.082376	-3.3712E-05	409.2423983779246	22.259	0.60564	22.259	22.017	22.622	0					43	20	3	0	0	0	0.31955	1	3093	3093		4.1166	1.0444	1	279820			39658	7479	23029	23030	48264	48264					0.10173804160149302
RPTLRLEL	8	Unmodified	_RPTLRLEL_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3113098144531	2	499.311284	996.608014	0.45794	0.00022865	-0.011049	-5.517E-06	0.44689	0.00022314	499.31112345796714	44.79	0.58076	44.858	44.651	45.232	0.068573					38	20	3	0	0	0	0.1951	1	9969	9969		43.858	0	1	512940			39659	8114	23030	23031	48265	48265					0.10957441951120472
RPTLRRWE	8	Unmodified	_RPTLRRWE_					0	0	0		ENST00000546253.5_1_11:62649261-62650084:+|nuORF;ENST00000537839.5_1_11:62649261-62650080:+|nuORF	ENST00000546253.5_1_11:62649261-62650084:+|nuORF	ENST00000546253.5_1_11:62649261-62650084:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3173828125	2	557.317432	1112.62031	0.018885	1.0525E-05	-0.24768	-0.00013804	-0.22879	-0.00012751	557.3172120316925	15.118	1.3853	15.118	14.561	15.947	0					105	48	4	0	0	0	0.44569	1	880	880		7.2892	0.56607	1	1122900			39660	11694	23031	23032	48266	48266					0.0685047841418509
RPTLWAAAL	9	Unmodified	_RPTLWAAAL_					0	0	0		ENSG00000146674|ENST00000613132|IGFBP3;nc|ENSG00000146674|P17936-2|IGFBP3	ENSG00000146674|ENST00000613132|IGFBP3	ENSG00000146674|ENST00000613132|IGFBP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7931213378906	2	499.792727	997.5709	0.26767	0.00013378	0.3525	0.00017617	0.62016	0.00030995	499.7928938615712	59.296	1.0701	59.296	58.8	59.87	0					115	37	5	0	0	0	0.05341	4	14416	14375;14416;14461;14508		51.63	27.609	1	6288200			39661	4721	23032	23033	48267;48268;48269;48270	48268					0.07201770405345087
RPTLWAAAL	9	Unmodified	_RPTLWAAAL_					0	0	0		ENSG00000146674|ENST00000613132|IGFBP3;nc|ENSG00000146674|P17936-2|IGFBP3	ENSG00000146674|ENST00000613132|IGFBP3	ENSG00000146674|ENST00000613132|IGFBP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7930603027344	2	499.792727	997.5709	0.34393	0.00017189	0.3233	0.00016158	0.66722	0.00033347	499.79288855530683	59.16	1.3163	59.251	58.612	59.928	0.091301					113	39	5	0	0	0	0.03069	3	14383	14333;14383;14427		60.074	23.947	1	6794400			39662	4721	23032	23033	48271;48272;48273	48272					0.07201770405345087
RPTLWAAAL	9	Unmodified	_RPTLWAAAL_					0	0	0		ENSG00000146674|ENST00000613132|IGFBP3;nc|ENSG00000146674|P17936-2|IGFBP3	ENSG00000146674|ENST00000613132|IGFBP3	ENSG00000146674|ENST00000613132|IGFBP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7930908203125	2	499.792727	997.5709	0.47239	0.0002361	0.39096	0.0001954	0.86335	0.0004315	499.792824847048	59.284	1.3183	59.27	58.977	60.295	-0.014271					112	46	4	0	0	0	0.03069	3	14417	14370;14417;14464		60.074	26.23	1	6414100			39663	4721	23032	23033	48274;48275;48276	48275					0.07201770405345087
RPTNANLTL	9	Unmodified	_RPTNANLTL_					0	0	0		nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8;ENST00000490635.1_1_X:54026257-54040884:-|nuORF	nc|ENSG00000172943|Q9UPP1-5|PHF8	nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7669372558594	2	500.282723	998.550893	-0.86778	-0.00043414	0.2475	0.00012382	-0.62029	-0.00031032	500.2827845812566	34.7	0.44969	34.7	34.418	34.868	0					26	15	2	0	0	0	0.24787	1	6833	6833		15.248	5.0651	1	167890			39664	6679	23033	23034	48277	48277					0.051559746747557256
RPTPFFPMP	9	Unmodified	_RPTPFFPMP_					0	0	0			REV__ENSG00000179715|ENST00000546455|PCED1B	REV__ENSG00000179715|ENST00000546455|PCED1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.8157958984375	2	545.281137	1088.54772	0.16411	8.9485E-05	-0.098671	-5.3803E-05	0.065437	3.5682E-05	545.281071431885	12.531	0.26648	12.463	12.313	12.579	-0.06806					15	8	2	0	0	0	0.25706	1	133	133		6.7232	0	1	38341	+		39665	18090	23034	23035	48278	48278					0.006990082963739042
RPTPKNSL	8	Unmodified	_RPTPKNSL_					0	0	0		ENSG00000065518|ENST00000184266|NDUFB4;nc|ENSG00000065518|O95168-2|NDUFB4;ENST00000418418.1_1_17:19743579-19743825:+|nuORF;ENST00000513465.1_1_4:43901008-43901365:+|nuORF	ENSG00000065518|ENST00000184266|NDUFB4	ENSG00000065518|ENST00000184266|NDUFB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7665710449219	2	456.766709	911.518865	-0.18151	-8.291E-05	-0.10411	-4.7554E-05	-0.28562	-0.00013046	456.76670995328897	15.194	0.93968	15.194	14.531	15.471	0					92	32	5	0	0	0	0.016352	1	959	959		106.94	37.835	1	398980			39666	817	23035	23036	48279	48279					0.05956606991605895
RPTPKNSL	8	Unmodified	_RPTPKNSL_					0	0	0		ENSG00000065518|ENST00000184266|NDUFB4;nc|ENSG00000065518|O95168-2|NDUFB4;ENST00000418418.1_1_17:19743579-19743825:+|nuORF;ENST00000513465.1_1_4:43901008-43901365:+|nuORF	ENSG00000065518|ENST00000184266|NDUFB4	ENSG00000065518|ENST00000184266|NDUFB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7666931152344	2	456.766709	911.518865	-0.064861	-2.9626E-05	0.04485	2.0486E-05	-0.020011	-9.1405E-06	456.7666664867602	15.391	0.50681	15.281	15.01	15.517	-0.10981					32	17	2	0	0	0	0.0021368	1	1000	1000		133.05	44.098	1	399890			39667	817	23035	23036	48280	48280					0.05956606991605895
RPTPKNSL	8	Unmodified	_RPTPKNSL_					0	0	0		ENSG00000065518|ENST00000184266|NDUFB4;nc|ENSG00000065518|O95168-2|NDUFB4;ENST00000418418.1_1_17:19743579-19743825:+|nuORF;ENST00000513465.1_1_4:43901008-43901365:+|nuORF	ENSG00000065518|ENST00000184266|NDUFB4	ENSG00000065518|ENST00000184266|NDUFB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7666320800781	2	456.766709	911.518865	-0.1286	-5.874E-05	0.097872	4.4705E-05	-0.030728	-1.4036E-05	456.7667025722245	15.363	0.38698	15.299	15.1	15.487	-0.064413					23	12	2	0	0	0	0.032239	1	1007	1007		121.53	42.806	1	461620			39668	817	23035	23036	48281	48281					0.05956606991605895
RPTPRGITL	9	Unmodified	_RPTPRGITL_					0	0	0		nc|ENSG00000167208|Q7Z614-2|SNX20;ENSG00000167208|ENST00000330943|SNX20	nc|ENSG00000167208|Q7Z614-2|SNX20	nc|ENSG00000167208|Q7Z614-2|SNX20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.808837890625	2	505.808908	1009.60326	0.21287	0.00010767	0.24382	0.00012333	0.45669	0.000231	505.8089838931576	31.043	0.7482	31.043	30.701	31.45	0					52	26	3	0	0	0	0.24467	1	5719	5719		17.113	3.2068	1	318020			39669	6159	23036	23037	48282	48282					0.098845578083683
RPTPRGITL	9	Unmodified	_RPTPRGITL_					0	0	0		nc|ENSG00000167208|Q7Z614-2|SNX20;ENSG00000167208|ENST00000330943|SNX20	nc|ENSG00000167208|Q7Z614-2|SNX20	nc|ENSG00000167208|Q7Z614-2|SNX20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.8091735839844	2	505.808908	1009.60326	0.11437	5.7849E-05	0.67484	0.00034134	0.78921	0.00039919	505.80914729595736	30.983	0.69151	31.011	30.721	31.413	0.027946					43	24	3	0	0	0	0.13748	1	5728	5728		32.786	7.3864	1	370500			39670	6159	23036	23037	48283	48283					0.098845578083683
RPTPRGITL	9	Unmodified	_RPTPRGITL_					0	0	0		nc|ENSG00000167208|Q7Z614-2|SNX20;ENSG00000167208|ENST00000330943|SNX20	nc|ENSG00000167208|Q7Z614-2|SNX20	nc|ENSG00000167208|Q7Z614-2|SNX20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.8092956542969	2	505.808908	1009.60326	0.19938	0.00010085	0.28727	0.0001453	0.48665	0.00024615	505.80900655299524	30.979	0.50939	31.006	30.758	31.267	0.027157					40	18	3	0	0	0	0.25714	1	5720	5720		15.248	1.3424	1	404980			39671	6159	23036	23037	48284	48284					0.098845578083683
RPTPRTSTAV	10	Unmodified	_RPTPRTSTAV_					0	0	0		ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3067626953125	2	543.306729	1084.59891	0.6065	0.00032952	-0.86171	-0.00046817	-0.25521	-0.00013866	543.3062560386085	29.833	0.49835	29.845	29.589	30.088	0.012266					36	16	3	0	0	0	0.38027	1	5422	5422		7.1017	0	1	222550			39672	6240	23037	23038	48285	48285					0.059990485947992056
RPTRKTVS	8	Unmodified	_RPTRKTVS_					0	0	0			REV__AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	REV__AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7853088378906	2	472.785433	943.556313	-0.24819	-0.00011734	-0.18994	-8.9803E-05	-0.43813	-0.00020714	472.7853433367384	12.541	0.93871	12.541	12.397	13.336	0					64	32	4	0	0	0	0.44885	1	191	191		6.2058	0	1	1102000	+		39673	13091	23038	23039	48286	48286					0.08227698257223892
RPTRTLIEF	9	Unmodified	_RPTRTLIEF_					0	0	0		ENST00000503467.1_1_4:17587853-17609209:+|nuORF;nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3	ENST00000503467.1_1_4:17587853-17609209:+|nuORF	ENST00000503467.1_1_4:17587853-17609209:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.304931640625	2	566.827298	1131.64004	0.21541	0.0001221	0.58293	0.00033042	0.79834	0.00045252	566.8276738432259	45.945	1.5451	46.005	45.253	46.798	0.059837					127	55	4	0	0	0	0.24289	1	10421	10421		18.146	0	1	1229900			39674	293	23039	23040	48287	48287					0.0794880963428568
RPTRTLIEF	9	Unmodified	_RPTRTLIEF_					0	0	0		ENST00000503467.1_1_4:17587853-17609209:+|nuORF;nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3	ENST00000503467.1_1_4:17587853-17609209:+|nuORF	ENST00000503467.1_1_4:17587853-17609209:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	566.827298	1131.64004	0.30661	0.00017379	-0.31816	-0.00018034	-0.011553	-6.5486E-06	566.8273541882186	46.049	1.2587	46.115	45.461	46.719	0.065048	0.04612	-0.00066371	NaN	13.042	109	45	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1335700			39675	293	23039	23040							0.0794880963428568
RPTSKRDSL	9	Unmodified	_RPTSKRDSL_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2988891601562	2	530.298904	1058.58326	0.15845	8.4027E-05	-0.29265	-0.00015519	-0.1342	-7.1167E-05	530.2988277887565	13.033	0.64448	13.033	12.751	13.396	0					57	19	4	0	0	0	0.048637	2	291	291;335		53.404	20.618	1	1178600			39676	576	23040	23041	48288;48289	48288					0.05630762077748841
RPTSKRDSL	9	Unmodified	_RPTSKRDSL_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2987060546875	2	530.298904	1058.58326	0.058881	3.1224E-05	-0.23078	-0.00012238	-0.1719	-9.1158E-05	530.2988332613724	13.126	0.60357	13.027	12.785	13.389	-0.099291					60	20	4	0	0	0	0.019446	1	318	318		64.927	35.086	1	1077500			39677	576	23040	23041	48290	48290					0.05630762077748841
RPTSKRDSL	9	Unmodified	_RPTSKRDSL_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2987670898438	2	530.298904	1058.58326	0.07396	3.9221E-05	-0.21063	-0.0001117	-0.13667	-7.2474E-05	530.2988182907951	13.076	0.62487	13.008	12.791	13.416	-0.067496					62	20	4	0	0	0	0.019446	2	307	307;350		64.927	32.141	1	1206600			39678	576	23040	23041	48291;48292	48291					0.05630762077748841
RPTTEAPQR	9	Unmodified	_RPTTEAPQR_					0	0	0		nc|ENSG00000179954|A1L4H1-2|SSC5D;ENSG00000179954|ENST00000389623|SSC5D	nc|ENSG00000179954|A1L4H1-2|SSC5D	nc|ENSG00000179954|A1L4H1-2|SSC5D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7459716796875	2	528.283254	1054.55196	0.4737	0.00025025	-0.47474	-0.0002508	-0.0010451	-5.5213E-07	528.2829926836704	23.247	0.52433	23.202	23.004	23.528	-0.044867					29	18	2	0	0	0	0.26168	1	3453	3453		1.8442	0	1	55124			39679	7160	23041	23042	48293	48293					0.026861890436521207
RPTTGNTL	8	Unmodified	_RPTTGNTL_					0	0	0		nc|ENSG00000107745|Q9BPX6-5|MICU1;nc|ENSG00000107745|Q9BPX6-4|MICU1;nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.2351989746094	2	430.235242	858.45593	-0.13331	-5.7356E-05	0.15803	6.7991E-05	0.024719	1.0635E-05	430.23523817781137	17.547	0.83523	17.547	17.242	18.077	0					65	28	3	0	0	0	0.1286	1	1666	1666		55.503	21.101	1	691890			39680	2143	23042	23043	48294	48294					0.021040412035858935
RPTTGNTL	8	Unmodified	_RPTTGNTL_					0	0	0		nc|ENSG00000107745|Q9BPX6-5|MICU1;nc|ENSG00000107745|Q9BPX6-4|MICU1;nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.2353210449219	2	430.235242	858.45593	-0.24546	-0.00010561	0.34415	0.00014807	0.09869	4.246E-05	430.2353405559074	17.734	0.73115	17.616	17.386	18.117	-0.11739					44	25	2	0	0	0	0.080297	1	1715	1715		63.961	22.121	1	871940			39681	2143	23042	23043	48295	48295					0.021040412035858935
RPTTGNTL	8	Unmodified	_RPTTGNTL_					0	0	0		nc|ENSG00000107745|Q9BPX6-5|MICU1;nc|ENSG00000107745|Q9BPX6-4|MICU1;nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.23516845703125	2	430.235242	858.45593	-0.16201	-6.9701E-05	0.25197	0.00010841	0.089962	3.8705E-05	430.2353046638418	17.657	0.89521	17.597	17.33	18.225	-0.060429					76	31	3	0	0	0	0.080297	1	1709	1709		63.961	22.121	1	665100			39682	2143	23042	23043	48296	48296					0.021040412035858935
RPTVARISSV	10	Unmodified	_RPTVARISSV_					0	0	0		ENSG00000011260|ENST00000225298|UTP18	ENSG00000011260|ENST00000225298|UTP18	ENSG00000011260|ENST00000225298|UTP18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3255004882812	2	543.324922	1084.63529	0.4412	0.00023972	-0.030877	-1.6776E-05	0.41033	0.00022294	543.3249257376947	17.386	0.35641	17.386	17.242	17.598	0					28	12	3	0	0	0	0.41168	1	1594	1594		1.3295	0	1	86253			39683	437	23043	23044	48297	48297					0.09635925491488706
RPTWLRHRQ	9	Unmodified	_RPTWLRHRQ_					0	0	0			REV__ENST00000378953.8_2_5:131811466-131811553:+|nuORF	REV__ENST00000378953.8_2_5:131811466-131811553:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.3530883789062	2	625.35488	1248.69521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.142	1	18.142	17.642	18.642	0								0	0	0	0.2672	1	1842	1842		0.52476	0	1		+		39684	20525	23044	23045	48298	48298					0.0808066094541573
RPVAELCMCL	10	Unmodified	_RPVAELCMCL_					0	0	0			REV__ENST00000375592.7_1_1:16621313-16632330:-|nuORF	REV__ENST00000375592.7_1_1:16621313-16632330:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.77734375	2	567.777047	1133.53954	0.20908	0.00011871	0.44441	0.00025233	0.65349	0.00037104	567.7772568538929	17.581	0.98173	17.581	17.069	18.051	0					84	33	3	0	0	0	0.39009	2	1634	1581;1634		5.2969	3.4526	1	83175	+		39685	20478	23045	23046	48299;48300	48300					-0.021886300069127174
RPVAELCMCL	10	Unmodified	_RPVAELCMCL_					0	0	0			REV__ENST00000375592.7_1_1:16621313-16632330:-|nuORF	REV__ENST00000375592.7_1_1:16621313-16632330:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.7774658203125	2	567.777047	1133.53954	0.17903	0.00010165	0.24535	0.00013931	0.42438	0.00024095	567.7772857035227	17.893	1.0135	17.775	17.137	18.151	-0.11739					66	35	2	0	0	0	0.40106	1	1655	1655		3.2813	0	1	98816	+		39686	20478	23045	23046	48301	48301					-0.021886300069127174
RPVAELCMCL	10	Unmodified	_RPVAELCMCL_					0	0	0			REV__ENST00000375592.7_1_1:16621313-16632330:-|nuORF	REV__ENST00000375592.7_1_1:16621313-16632330:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.7777709960938	2	567.777047	1133.53954	0.17551	9.9652E-05	0.19645	0.00011154	0.37196	0.00021119	567.7772271882628	17.728	1.0619	17.667	17.051	18.113	-0.060429					69	37	2	0	0	0	0.40106	1	1625	1625		3.2813	0	1	100230	+		39687	20478	23045	23046	48302	48302					-0.021886300069127174
RPVAPSGTAL	10	Unmodified	_RPVAPSGTAL_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.77978515625	2	484.779816	967.545079	0.038374	1.8603E-05	0.12533	6.0758E-05	0.1637	7.9361E-05	484.77992288741297	31.263	0.71529	31.263	30.838	31.553	0					66	25	4	0	0	0	0.084702	1	5830	5830		51.415	9.4597	1	527420			39688	3299	23046	23047	48303	48303					0.06000876163091107
RPVAPSGTAL	10	Unmodified	_RPVAPSGTAL_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7798767089844	2	484.779816	967.545079	-0.036549	-1.7718E-05	0.20993	0.00010177	0.17338	8.405E-05	484.7799390964684	31.222	0.57796	31.264	30.996	31.574	0.042366					56	20	4	0	0	0	0.011792	1	5814	5814		80.676	31.122	1	554050			39689	3299	23046	23047	48304	48304					0.06000876163091107
RPVAPSGTAL	10	Unmodified	_RPVAPSGTAL_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7799377441406	2	484.779816	967.545079	0.22792	0.00011049	0.15056	7.2988E-05	0.37847	0.00018348	484.7799092899048	31.185	0.57439	31.226	30.933	31.507	0.040991					57	20	4	0	0	0	0.030754	1	5803	5803		63.227	21.272	1	593160			39690	3299	23046	23047	48305	48305					0.06000876163091107
RPVARLRAL	9	Unmodified	_RPVARLRAL_					0	0	0		nc|ENSG00000168453|O43593-2|HR;ENSG00000168453|ENST00000381418|HR	nc|ENSG00000168453|O43593-2|HR	nc|ENSG00000168453|O43593-2|HR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3455200195312	2	526.345992	1050.67743	0.20033	0.00010544	-0.49154	-0.00025872	-0.29121	-0.00015328	526.3456559073679	27.485	0.93741	27.463	27.1	28.038	-0.021412					86	32	4	0	0	0	0.31038	1	4761	4761		7.2892	0	1	1007500			39691	6276	23047	23048	48306	48306					0.15411945690539142
RPVDVQMREF	10	Unmodified	_RPVDVQMREF_					0	0	0		ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2203369140625	3	426.220407	1275.63939	-0.17228	-7.3428E-05	-0.096307	-4.1048E-05	-0.26858	-0.00011448	426.22040720827454	26.46	1.0146	26.46	26.106	27.121	0					111	35	4	0	0	0	0.37568	1	4404	4404		7.9454	0	1	1103900			39692	7396	23048	23049	48307	48307					0.01259646922903812
RPVFESQKHK	10	Unmodified	_RPVFESQKHK_					0	0	0		ENST00000447937.1_1_Y:21230620-21239046:-|nuORF	ENST00000447937.1_1_Y:21230620-21239046:-|nuORF	ENST00000447937.1_1_Y:21230620-21239046:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.5596008300781	3	419.235045	1254.6833	-0.15507	-6.501E-05	-0.98647	-0.00041356	-1.1415	-0.00047857	419.2345567685954	23.98	0.75536	23.98	23.699	24.454	0					47	25	3	0	0	0	0.39145	1	3664	3664		5.0475	0.64137	1	203780			39693	10610	23049	23050	48308	48308					0.06614999411567624
RPVGRLEAL	9	Unmodified	_RPVGRLEAL_					0	0	0			REV__nc|ENSG00000092964|Q16555|DPYSL2	REV__nc|ENSG00000092964|Q16555|DPYSL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8211364746094	2	505.808908	1009.60326	0.50851	0.00025721	-0.60995	-0.00030852	-0.10144	-5.1309E-05	505.8086540679735	29.276	0.62354	29.276	28.898	29.521	0					40	22	2	0	0	0	0.088443	1	5251	5251		39.95	3.8227	1	164200	+		39694	22905	23050	23051	48309	48309					0.098845578083683
RPVGRLEAL	9	Unmodified	_RPVGRLEAL_					0	0	0			REV__nc|ENSG00000092964|Q16555|DPYSL2	REV__nc|ENSG00000092964|Q16555|DPYSL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.8088684082031	2	505.808908	1009.60326	0.16299	8.2443E-05	-0.038272	-1.9358E-05	0.12472	6.3085E-05	505.8089328049578	29.3	0.57182	29.313	28.935	29.507	0.013474					34	20	2	0	0	0	0.17277	1	5235	5235		27.629	2.2295	1	228840	+		39695	22905	23050	23051	48310	48310					0.098845578083683
RPVGRLEAL	9	Unmodified	_RPVGRLEAL_					0	0	0			REV__nc|ENSG00000092964|Q16555|DPYSL2	REV__nc|ENSG00000092964|Q16555|DPYSL2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	505.808908	1009.60326	0.50851	0.00025721	-0.60995	-0.00030852	-0.10144	-5.1309E-05	505.8086540679735	29.276	0.62354	29.276	28.898	29.521	0	-0.0061612	-0.0002379	NaN	39.95	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164200	+		39696	22905	23050	23051							0.098845578083683
RPVGTRALRL	10	Unmodified	_RPVGTRALRL_					0	0	0		ENST00000484157.5_1_1:155107991-155108063:+|nuORF	ENST00000484157.5_1_1:155107991-155108063:+|nuORF	ENST00000484157.5_1_1:155107991-155108063:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.3133544921875	2	569.862006	1137.70946	0.11746	6.6938E-05	-0.33114	-0.0001887	-0.21368	-0.00012177	570.3633680652213	27.315	0.3371	27.303	27.101	27.438	-0.011562					17	11	2	0	0	0	0.32033	1	4593	4593		3.5965	1.019	1	53817			39697	11070	23051	23052	48311	48311					0.14611313373688972
RPVGVGGPRQG	11	Unmodified	_RPVGVGGPRQG_					0	0	0			REV__ENST00000463730.1_1_10:13337446-13342087:-|nuORF	REV__ENST00000463730.1_1_10:13337446-13342087:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3071899414062	2	540.307064	1078.59957	0.58834	0.00031789	-1.1248	-0.00060775	-0.53649	-0.00028987	540.3056612893748	17.105	1.0071	17.045	16.81	17.817	-0.060429					51	35	3	0	0	0	0.33037	1	1517	1517		7.609	0.88579	1	100270	+		39698	21256	23052	23053	48312	48312					0.06341888034535259
RPVHRRKL	8	Unmodified	_RPVHRRKL_					0	0	0		ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3436279296875	2	531.343784	1060.67301	0.14815	7.8716E-05	-0.09612	-5.1073E-05	0.052026	2.7644E-05	531.343631639017	12.687	0.39735	12.687	12.555	12.952	0					27	13	3	0	0	0	0.34247	1	206	206		8.5933	3.3626	1	113150			39699	2784	23053	23054	48313	48313					0.14510481267643627
RPVHRRKL	8	Unmodified	_RPVHRRKL_					0	0	0		ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	ENSG00000117228|ENST00000370473|GBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.34375	2	531.343784	1060.67301	0.048687	2.587E-05	0.011037	5.8645E-06	0.059725	3.1734E-05	531.3437628375156	12.756	0.38795	12.688	12.548	12.936	-0.067495					27	12	3	0	0	0	0.45307	2	246	223;246		4.756	2.4533	1	106140			39700	2784	23053	23054	48314;48315	48315					0.14510481267643627
RPVILERGAR	10	Unmodified	_RPVILERGAR_					0	0	0			REV__ENST00000596825.5_2_19:58740539-58741795:+|nuORF	REV__ENST00000596825.5_2_19:58740539-58741795:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.8591918945312	2	583.859464	1165.70437	0.40955	0.00023912	-2.2626	-0.001321	-1.853	-0.0010819	583.8589009915867	88.486	2.2643	88.483	87.246	89.51	-0.0028381					270	111	4	0	0	0	0.34795	3	23317	23317;23355;23447		13.042	5.7532	1	1198200	+		39701	22603	23054	23055	48316;48317;48318	48316					0.1281500951106409
RPVKNEKK	8	Unmodified	_RPVKNEKK_					0	0	0			REV__CHD2|p.N1397Tfs*9|1|0.25|ENSG00000173575|chr15:93002227-93002227|G/-|frameshift_variant	REV__CHD2|p.N1397Tfs*9|1|0.25|ENSG00000173575|chr15:93002227-93002227|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2510681152344	2	499.808908	997.603263	0.22074	0.00011033	0.43789	0.00021886	0.65863	0.00032919	499.8089115069301	27.136	0.51458	27.115	26.867	27.382	-0.021412					34	17	3	0	0	0	0.34408	1	4606	4606		2.3027	0	1	109560	+		39702	13148	23055	23056	48319	48319					0.10436557808372982
RPVNLHRF	8	Unmodified	_RPVNLHRF_					0	0	0			REV__nc|ENSG00000122482|Q9H582-2|ZNF644	REV__nc|ENSG00000122482|Q9H582-2|ZNF644	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.33251953125	2	519.801417	1037.58828	0.66999	0.00034826	-1.1617	-0.00060384	-0.49168	-0.00025558	519.8007567618806	36.199	0.80201	36.285	35.931	36.733	0.08625					50	28	2	0	0	0	0.34218	1	7451	7451		5.2307	0	1	664310	+		39703	15158	23056	23057	48320	48320					0.07099110731041947
RPVNLNSSEKL	11	Unmodified	_RPVNLNSSEKL_					0	0	0			REV__FGD1|p.L654V|1|0.34|ENSG00000102302|chrX:54455503-54455503|G/C|missense_variant	REV__FGD1|p.L654V|1|0.34|ENSG00000102302|chrX:54455503-54455503|G/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.1963195800781	3	419.570093	1255.68845	-0.012786	-5.3645E-06	-1.7581	-0.00073764	-1.7709	-0.000743	419.9026636772555	32.862	0.20621	32.862	32.749	32.955	0					10	5	2	0	0	0	0.33025	1	6332	6332		6.2344	0	1	84176	+		39704	22685	23057	23058	48321	48321					0.07083258483521604
RPVNLSVPA	9	Unmodified	_RPVNLSVPA_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.77349853515625	2	476.782359	951.550165	-0.52329	-0.0002495	0.37705	0.00017977	-0.14624	-6.9722E-05	476.78247801760114	34.431	0.369	34.431	34.277	34.646	0					18	12	2	0	0	0	0.28674	1	6836	6836		10.824	0.75	1	99673	+		39705	13344	23058	23059	48322	48322					0.07245180025711306
RPVPTLFLF	9	Unmodified	_RPVPTLFLF_					0	0	0			REV__ENST00000532086.1_1_16:3115742-3115796:+|nuORF	REV__ENST00000532086.1_1_16:3115742-3115796:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.31689453125	2	545.326402	1088.63825	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.037	1	90.128	89.628	90.628	0.090668								0	0	0	0.22789	1	23843	23843		13.508	4.1604	1		+		39706	22027	23059	23060	48323	48323					0.09747800616310087
RPVQFVIRY	9	Unmodified	_RPVQFVIRY_					0	0	0			REV__ENST00000556757.5_1_14:90863574-90867886:+|nuORF	REV__ENST00000556757.5_1_14:90863574-90867886:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.341552734375	2	589.345658	1176.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.73	1	117.71	117.21	118.21	-0.024147								0	0	0	0.2672	1	30462	30462		0.52476	0	1		+		39707	22264	23060	23061	48324	48324					0.09549106250847217
RPVQKLLRL	9	Unmodified	_RPVQKLLRL_					0	0	0		ENSG00000158863|ENST00000289921|FHIP2B	ENSG00000158863|ENST00000289921|FHIP2B	ENSG00000158863|ENST00000289921|FHIP2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7586059570312	2	561.877125	1121.7397	0.21662	0.00012172	-0.71276	-0.00040048	-0.49613	-0.00027877	561.8765813526592	31.277	0.35732	31.318	31.15	31.507	0.040991					30	12	3	0	0	0	0.25202	1	5810	5810		10.824	0	1	248690			39708	5377	23061	23062	48325	48325					0.18369672038897988
RPVQPKRTFI	10	Unmodified	_RPVQPKRTFI_					0	0	0			REV__ENST00000522760.5_1_5:169700986-169724717:-|nuORF	REV__ENST00000522760.5_1_5:169700986-169724717:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.209716796875	3	414.587418	1240.74043	0.018671	7.7406E-06	-1.152	-0.0004776	-1.1333	-0.00046986	414.58705092154213	25.757	0.3708	25.719	25.412	25.783	-0.03867					26	12	3	0	0	0	0.31969	1	4122	4122		5.7834	1.6668	1	174740	+		39709	21919	23062	23063	48326	48326					0.1296846668794842
RPVQPNGALLH	11	Unmodified	_RPVQPNGALLH_					0	0	0			REV__ENST00000371712.3_1_9:139333425-139334268:-|nuORF	REV__ENST00000371712.3_1_9:139333425-139334268:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.3306884765625	2	601.343646	1200.67274	-0.97004	-0.00058333	0.32177	0.00019349	-0.64827	-0.00038984	601.3437465538085	34.841	0.74442	34.917	34.685	35.429	0.075306					64	26	3	0	0	0	0.41896	1	6877	6877		8.7454	3.4485	1	1198000	+		39710	20401	23063	23064	48327	48327					0.08043016757142141
RPVQVRGRL	9	Unmodified	_RPVQVRGRL_					0	0	0		BDP1|p.K717Nfs*2|1|0.03|ENSG00000145734|chr5:71502701-71502705|AGCTG/-|frameshift_variant;nc|ENSG00000145734|A6H8Y1-5|BDP1;ENST00000508157.3_1_5:70790975-70807035:+|nuORF;nc|ENSG00000145734|A6H8Y1-4|BDP1;nc|ENSG00000145734|A6H8Y1-3|BDP1;BDP1|p.V1777Ifs*4|1|0.05|ENSG00000145734|chr5:71522889-71522890|-/AATCTCTA|frameshift_variant;nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1	BDP1|p.K717Nfs*2|1|0.03|ENSG00000145734|chr5:71502701-71502705|AGCTG/-|frameshift_variant	BDP1|p.K717Nfs*2|1|0.03|ENSG00000145734|chr5:71502701-71502705|AGCTG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8411254882812	2	540.841074	1079.66759	0.14261	7.7132E-05	-0.17422	-9.4224E-05	-0.031604	-1.7093E-05	540.8409655336466	13.36	0.48667	13.36	13.2	13.687	0					37	16	4	0	0	0	0.18803	1	393	393		25.399	1.6095	1	557530			39711	77	23064	23065	48328	48328					0.13094757685189506
RPVQVRGRL	9	Unmodified	_RPVQVRGRL_					0	0	0		BDP1|p.K717Nfs*2|1|0.03|ENSG00000145734|chr5:71502701-71502705|AGCTG/-|frameshift_variant;nc|ENSG00000145734|A6H8Y1-5|BDP1;ENST00000508157.3_1_5:70790975-70807035:+|nuORF;nc|ENSG00000145734|A6H8Y1-4|BDP1;nc|ENSG00000145734|A6H8Y1-3|BDP1;BDP1|p.V1777Ifs*4|1|0.05|ENSG00000145734|chr5:71522889-71522890|-/AATCTCTA|frameshift_variant;nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1	BDP1|p.K717Nfs*2|1|0.03|ENSG00000145734|chr5:71502701-71502705|AGCTG/-|frameshift_variant	BDP1|p.K717Nfs*2|1|0.03|ENSG00000145734|chr5:71502701-71502705|AGCTG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8411865234375	2	540.841074	1079.66759	0.13027	7.0456E-05	-0.096325	-5.2097E-05	0.033946	1.8359E-05	540.8410324976878	13.453	0.52957	13.354	13.16	13.69	-0.099291					45	18	4	0	0	0	0.14076	1	418	418		32.305	2.4649	1	530490			39712	77	23064	23065	48329	48329					0.13094757685189506
RPVQVRGRL	9	Unmodified	_RPVQVRGRL_					0	0	0		BDP1|p.K717Nfs*2|1|0.03|ENSG00000145734|chr5:71502701-71502705|AGCTG/-|frameshift_variant;nc|ENSG00000145734|A6H8Y1-5|BDP1;ENST00000508157.3_1_5:70790975-70807035:+|nuORF;nc|ENSG00000145734|A6H8Y1-4|BDP1;nc|ENSG00000145734|A6H8Y1-3|BDP1;BDP1|p.V1777Ifs*4|1|0.05|ENSG00000145734|chr5:71522889-71522890|-/AATCTCTA|frameshift_variant;nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1	BDP1|p.K717Nfs*2|1|0.03|ENSG00000145734|chr5:71502701-71502705|AGCTG/-|frameshift_variant	BDP1|p.K717Nfs*2|1|0.03|ENSG00000145734|chr5:71502701-71502705|AGCTG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8411254882812	2	540.841074	1079.66759	0.16097	8.7058E-05	-0.037307	-2.0177E-05	0.12366	6.6881E-05	540.8410514481671	13.446	0.70029	13.379	13.215	13.916	-0.067496					49	24	4	0	0	0	0.14076	1	420	420		32.305	2.4649	1	560830			39713	77	23064	23065	48330	48330					0.13094757685189506
RPVRAVAK	8	Unmodified	_RPVRAVAK_					0	0	0		ZNF518B|p.K223R|1|0.11|ENSG00000178163|chr4:10445661-10445661|T/C|missense_variant	ZNF518B|p.K223R|1|0.11|ENSG00000178163|chr4:10445661-10445661|T/C|missense_variant	ZNF518B|p.K223R|1|0.11|ENSG00000178163|chr4:10445661-10445661|T/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7930603027344	2	448.793061	895.571569	0.019294	8.6592E-06	0.035512	1.5937E-05	0.054806	2.4597E-05	448.792960240998	24.595	0.60944	24.564	24.344	24.953	-0.031408					40	20	3	0	0	0	0.43043	1	3816	3816		12.532	0	1	167790			39714	23418	23065	23066	48331	48331					0.11960609845084491
RPVRAVAK	8	Unmodified	_RPVRAVAK_					0	0	0		ZNF518B|p.K223R|1|0.11|ENSG00000178163|chr4:10445661-10445661|T/C|missense_variant	ZNF518B|p.K223R|1|0.11|ENSG00000178163|chr4:10445661-10445661|T/C|missense_variant	ZNF518B|p.K223R|1|0.11|ENSG00000178163|chr4:10445661-10445661|T/C|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	448.793061	895.571569	0.16966	7.6143E-05	-0.3018	-0.00013545	-0.13214	-5.9304E-05	448.79290849666387	24.455	0.62281	24.455	24.22	24.843	0	-0.074492	-0.00013507	NaN	12.532	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161740			39715	23418	23065	23066							0.11960609845084491
RPVRKPDR	8	Unmodified	_RPVRKPDR_					0	0	0		ENST00000368662.9_1_6:112407800-112408689:-|nuORF;ENST00000603722.1_1_6:112408397-112408689:-|nuORF	ENST00000368662.9_1_6:112407800-112408689:-|nuORF	ENST00000368662.9_1_6:112407800-112408689:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.3113403320312	2	512.312149	1022.60975	0.062564	3.2052E-05	-0.776	-0.00039755	-0.71343	-0.0003655	512.3115117142634	15.499	0.68977	15.499	15.044	15.734	0					39	23	3	0	0	0	0.46092	1	1046	1046		2.0598	0	1	49561			39716	9763	23066	23067	48332	48332					0.09934495759750916
RPVRPLSS	8	Unmodified	_RPVRPLSS_					0	0	0			REV__ENST00000379205.4_1_4:159589110-159589200:-|nuORF	REV__ENST00000379205.4_1_4:159589110-159589200:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2742614746094	2	456.274701	910.534849	0.23701	0.00010814	-1.1483	-0.00052394	-0.91128	-0.00041579	456.27437111208155	21.006	1.7085	21.006	20.622	22.331	0					172	60	5	0	0	0	0.44734	1	2927	2927		6.7232	0	1	8300400	+		39717	20529	23067	23068	48333	48333					0.07600313228522282
RPVRSSGL	8	Unmodified	_RPVRSSGL_					0	0	0			REV__ENST00000565167.1_1_15:41810158-41813973:-|nuORF	REV__ENST00000565167.1_1_15:41810158-41813973:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.2472229003906	2	436.259051	870.503549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.842	1	34.919	34.419	35.419	0.077377								0	0	0	0.35014	1	6907	6907		14.582	0	1		+		39718	14387	23068	23069	48334	48334					0.06311740194428239
RPVRVRAHP	9	Unmodified	_RPVRVRAHP_					0	0	0		ENST00000493217.1_1_7:100075012-100075069:-|nuORF	ENST00000493217.1_1_7:100075012-100075069:-|nuORF	ENST00000493217.1_1_7:100075012-100075069:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.777099609375	2	544.333416	1086.65228	0.18763	0.00010213	-2.0515	-0.0011167	-1.8639	-0.0010146	544.3327803856662	13.101	0.081996	13.033	12.965	13.047	-0.067496					4	2	2	0	0	0	0.26257	1	309	309		0.52476	0	1	8255.7			39719	11198	23069	23070	48335	48335					0.11241890887959016
RPVSIATL	8	Unmodified	_RPVSIATL_					0	0	0			REV__ENST00000176763.9_1_5:171471274-171471448:-|nuORF	REV__ENST00000176763.9_1_5:171471274-171471448:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.2287902832031	2	428.766178	855.517802	0.12121	5.197E-05	0.3393	0.00014548	0.46051	0.00019745	428.7663116689735	46.631	0.51793	46.683	46.467	46.984	0.052574					27	18	2	0	0	0	0.32886	1	10571	10571		21.747	0	1	373730	+		39720	19390	23070	23071	48336	48336					0.084263926227095
RPVSQVTL	8	Unmodified	_RPVSQVTL_					0	0	0		nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8;SIGLEC8|p.D400Ifs*19|1|0.32|ENSG00000105366|chr19:51454266-51454266|C/-|frameshift_variant;nc|ENSG00000105366|Q9NYZ4-3|SIGLEC8;ENSG00000105366|ENST00000321424|SIGLEC8	nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8	nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2816162109375	2	450.269084	898.523616	0.31339	0.00014111	0.044931	2.0231E-05	0.35832	0.00016134	450.26903719460165	36.011	0.73452	36.011	35.745	36.479	0					65	26	4	0	0	0	0.079438	1	7229	7229		64.236	0	1	1229700			39721	1971	23071	23072	48337	48337					0.07029491134380805
RPVSQVTL	8	Unmodified	_RPVSQVTL_					0	0	0		nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8;SIGLEC8|p.D400Ifs*19|1|0.32|ENSG00000105366|chr19:51454266-51454266|C/-|frameshift_variant;nc|ENSG00000105366|Q9NYZ4-3|SIGLEC8;ENSG00000105366|ENST00000321424|SIGLEC8	nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8	nc|ENSG00000105366|Q9NYZ4-2|SIGLEC8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2815856933594	2	450.269084	898.523616	0.37102	0.00016706	-0.062195	-2.8004E-05	0.30883	0.00013906	450.26899587690474	35.841	0.80488	35.928	35.698	36.503	0.08625					69	28	4	0	0	0	0.13277	1	7175	7175		54.774	0	1	1260400			39722	1971	23071	23072	48338	48338					0.07029491134380805
RPVSRVALY	9	Unmodified	_RPVSRVALY_					0	0	0		ENST00000473770.5_1_22:32017296-32019834:-|nuORF;nc|ENSG00000241878|Q9UG56-2|PISD	ENST00000473770.5_1_22:32017296-32019834:-|nuORF	ENST00000473770.5_1_22:32017296-32019834:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7772216796875	2	530.816733	1059.61891	0.19672	0.00010442	0.24108	0.00012797	0.4378	0.00023239	530.8169861253531	14.69	0.34188	14.69	14.531	14.873	0					13	11	2	0	0	0	0.26168	1	773	773		1.8442	1.1539	1	25635			39723	10911	23072	23073	48339	48339					0.09148844325432037
RPVSRVALY	9	Unmodified	_RPVSRVALY_					0	0	0		ENST00000473770.5_1_22:32017296-32019834:-|nuORF;nc|ENSG00000241878|Q9UG56-2|PISD	ENST00000473770.5_1_22:32017296-32019834:-|nuORF	ENST00000473770.5_1_22:32017296-32019834:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	530.816733	1059.61891	0.13027	6.9151E-05	0.43293	0.0002298	0.5632	0.00029895	530.8169046611697	14.82	0.1995	14.71	14.618	14.818	-0.10981	0.010255	0.0001414	NaN	1.8442	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43806			39724	10911	23072	23073							0.09148844325432037
RPVSVVDRRR	10	Unmodified	_RPVSVVDRRR_					0	0	0			REV__ENST00000521645.5_2_8:104427296-104427404:-|nuORF	REV__ENST00000521645.5_2_8:104427296-104427404:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.371826171875	2	620.373269	1238.73199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.349	1	96.349	95.849	96.849	0								0	0	0	0.37664	1	25740	25740		3.5965	0.60125	1		+		39725	21905	23073	23074	48340	48340					0.12216912771305033
RPVTPITNF	9	Unmodified	_RPVTPITNF_					0	0	0		nc|ENSG00000266173|Q7RTN6-5|STRADA;nc|ENSG00000266173|Q7RTN6-3|STRADA;ENSG00000266173|ENST00000336174|STRADA;ENST00000245865.10_2_17:61780961-61781237:-|nuORF	nc|ENSG00000266173|Q7RTN6-5|STRADA	nc|ENSG00000266173|Q7RTN6-5|STRADA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7955932617188	2	522.795466	1043.57638	0.2376	0.00012422	0.43685	0.00022838	0.67445	0.0003526	522.7956453076175	46.361	0.72746	46.361	46.085	46.813	0					50	26	2	0	0	0	0.013404	1	10465	10465		74.2	18.697	1	1012600			39726	8677	23074	23075	48341	48341					0.056334491971938405
RPVTPITNF	9	Unmodified	_RPVTPITNF_					0	0	0		nc|ENSG00000266173|Q7RTN6-5|STRADA;nc|ENSG00000266173|Q7RTN6-3|STRADA;ENSG00000266173|ENST00000336174|STRADA;ENST00000245865.10_2_17:61780961-61781237:-|nuORF	nc|ENSG00000266173|Q7RTN6-5|STRADA	nc|ENSG00000266173|Q7RTN6-5|STRADA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7954711914062	2	522.795466	1043.57638	0.35975	0.00018808	-0.26214	-0.00013705	0.097613	5.1031E-05	522.7951996614092	46.25	0.80998	46.31	46.043	46.853	0.059834					60	29	3	0	0	0	0.013404	1	10458	10458		74.2	10.239	1	677380			39727	8677	23074	23075	48342	48342					0.056334491971938405
RPVTPITNF	9	Unmodified	_RPVTPITNF_					0	0	0		nc|ENSG00000266173|Q7RTN6-5|STRADA;nc|ENSG00000266173|Q7RTN6-3|STRADA;ENSG00000266173|ENST00000336174|STRADA;ENST00000245865.10_2_17:61780961-61781237:-|nuORF	nc|ENSG00000266173|Q7RTN6-5|STRADA	nc|ENSG00000266173|Q7RTN6-5|STRADA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7951049804688	2	522.795466	1043.57638	0.31895	0.00016674	-0.11432	-5.9765E-05	0.20463	0.00010698	522.7953793933889	46.255	0.76412	46.32	46.043	46.807	0.065048					56	27	3	0	0	0	0.0073901	1	10421	10421		83.429	10.461	1	737070			39728	8677	23074	23075	48343	48343					0.056334491971938405
RPVTVFLQL	9	Unmodified	_RPVTVFLQL_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.252197265625	2	536.829309	1071.64407	0.71836	0.00038564	1.0432	0.00056003	1.7616	0.00094567	536.8297243611298	66.039	0.52375	66.039	65.845	66.369	0					34	18	2	0	0	0	0.11234	1	16514	16514		43.772	9.67	1	678700			39729	1079	23075	23076	48344	48344					0.11110899127993434
RPWAVERGKK	10	Unmodified	_RPWAVERGKK_					0	0	0			REV__ENST00000565341.5_1_16:787286-789725:-|nuORF	REV__ENST00000565341.5_1_16:787286-789725:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.1742858886719	3	409.575401	1225.70437	-0.10029	-4.1077E-05	-1.1668	-0.00047791	-1.2671	-0.00051899	409.90899068520366	16.984	0.14696	16.984	16.867	17.014	0					7	4	2	0	0	0	0.32068	1	1476	1476		3.5871	0.26742	1	14919	+		39730	22355	23076	23077	48345	48345					0.10055009511074786
RPWFHAKY	8	Unmodified	_RPWFHAKY_					0	0	0			REV__nc|ENSG00000167123|Q5T4B2-2|CERCAM	REV__nc|ENSG00000167123|Q5T4B2-2|CERCAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7908935546875	2	552.790518	1103.56648	0.025985	1.4364E-05	-0.10954	-6.0554E-05	-0.083558	-4.619E-05	552.7905311204083	13.739	0.42685	13.739	13.597	14.024	0					38	14	4	0	0	0	0.45307	1	525	525		4.756	0	1	173000	+		39731	17366	23077	23078	48346	48346					0.018843059824575903
RPWLEGRHTL	10	Unmodified	_RPWLEGRHTL_					0	0	0		ENST00000475582.5_1_2:27589580-27589796:-|nuORF;nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4	ENST00000475582.5_1_2:27589580-27589796:-|nuORF	ENST00000475582.5_1_2:27589580-27589796:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2356262207031	3	422.235156	1263.68364	0.15159	6.4006E-05	0.49688	0.0002098	0.64847	0.00027381	422.23532696017315	32.648	0.70418	32.648	32.307	33.011	0					55	24	3	0	0	0	0.017634	2	6259	6208;6259		74.306	57.477	1	379320			39732	2617	23078	23079	48347;48348	48348					0.06234419131442337
RPWLEGRHTL	10	Unmodified	_RPWLEGRHTL_					0	0	0		ENST00000475582.5_1_2:27589580-27589796:-|nuORF;nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4	ENST00000475582.5_1_2:27589580-27589796:-|nuORF	ENST00000475582.5_1_2:27589580-27589796:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.23565673828125	3	422.235156	1263.68364	0.21611	9.1249E-05	0.21915	9.2532E-05	0.43526	0.00018378	422.23516934688837	32.537	0.76488	32.592	32.182	32.946	0.055309					68	27	4	0	0	0	0.066197	3	6231	6166;6219;6231		55.467	42.538	1	344320			39733	2617	23078	23079	48349;48350;48351	48351					0.06234419131442337
RPWLEGRHTL	10	Unmodified	_RPWLEGRHTL_					0	0	0		ENST00000475582.5_1_2:27589580-27589796:-|nuORF;nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4	ENST00000475582.5_1_2:27589580-27589796:-|nuORF	ENST00000475582.5_1_2:27589580-27589796:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2354431152344	3	422.235156	1263.68364	0.0539	2.2758E-05	0.43537	0.00018383	0.48927	0.00020659	422.23525722927627	32.544	0.76555	32.598	32.277	33.042	0.054371					66	27	3	0	0	0	0.017634	3	6228	6165;6210;6228		74.306	74.306	1	421710			39734	2617	23078	23079	48352;48353;48354	48354					0.06234419131442337
RPWPGWLT	8	Unmodified	_RPWPGWLT_					0	0	0		ENST00000256190.12_1_11:10315585-10315699:-|nuORF	ENST00000256190.12_1_11:10315585-10315699:-|nuORF	ENST00000256190.12_1_11:10315585-10315699:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7714538574219	2	506.771794	1011.52904	-0.001647	-8.3467E-07	-0.49991	-0.00025334	-0.50155	-0.00025417	506.77145763878735	13.977	0.50864	13.977	13.74	14.249	0					31	17	2	0	0	0	0.45307	1	611	611		4.756	1.1595	1	121380			39735	8926	23079	23080	48355	48355					0.023732147168288975
RPWPRWPDM	9	Unmodified	_RPWPRWPDM_					0	0	0		ENST00000374301.7_1_1:26146807-26150235:+|nuORF	ENST00000374301.7_1_1:26146807-26150235:+|nuORF	ENST00000374301.7_1_1:26146807-26150235:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5522766113281	3	414.20632	1239.59713	-0.16502	-6.8352E-05	-3.7335	-0.0015465	-3.8986	-0.0016148	414.2052986932366	16.346	0.71216	16.346	15.947	16.659	0					47	24	3	0	0	0	0.26238	1	1205	1205		1.0715	0.10919	1	34057			39736	9892	23080	23081	48356	48356					-0.013082836948115073
RPWREGTG	8	Unmodified	_RPWREGTG_					0	0	0			REV__ENST00000514698.5_1_4:995622-996120:+|nuORF	REV__ENST00000514698.5_1_4:995622-996120:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.75921630859375	2	479.746308	957.478063	-0.037587	-1.8032E-05	0.39081	0.00018749	0.35322	0.00016946	479.74649354092384	15.728	0.45066	15.728	15.557	16.008	0					23	15	2	0	0	0	0.46491	1	1172	1172		0.69038	0.69038	1	33653	+		39737	21837	23081	23082	48357	48357					-0.002377343279931665
RPWRKTAALL	10	Unmodified	_RPWRKTAALL_					0	0	0		ENST00000445329.5_1_11:5618049-5624898:+|nuORF	ENST00000445329.5_1_11:5618049-5624898:+|nuORF	ENST00000445329.5_1_11:5618049-5624898:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3707275390625	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.95	1	114.93	114.43	115.43	-0.020988								0	0	0	0.38201	1	29826	29826		0.45834	0	1				39738	10582	23082	23083	48358	48358					0.13292484033490837
RPWRQRAL	8	Unmodified	_RPWRQRAL_					0	0	0			REV__ENST00000247461.8_1_5:179125942-179126098:+|nuORF	REV__ENST00000247461.8_1_5:179125942-179126098:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2991333007812	2	541.820141	1081.62573	0.6306	0.00034167	-0.94709	-0.00051316	-0.31649	-0.00017148	541.8193831050719	37.893	0.68132	37.893	37.587	38.269	0					49	23	3	0	0	0	0.34247	1	7870	7870		4.756	0.81161	1	541740	+		39739	19510	23083	23084	48359	48359					0.08818201996632524
RPWRRARRP	9	Unmodified	_RPWRRARRP_					0	0	0		ENST00000409939.7_1_16:30381377-30381548:-|nuORF	ENST00000409939.7_1_16:30381377-30381548:-|nuORF	ENST00000409939.7_1_16:30381377-30381548:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.28204345703125	3	417.586635	1249.73807	0.088485	3.695E-05	-1.5235	-0.00063619	-1.435	-0.00059924	417.5860281228543	24.313	0.31073	24.274	24.081	24.392	-0.038927					17	10	2	0	0	0	0.2615	1	3693	3693		2.4985	0.59211	1	45137			39740	10262	23084	23085	48360	48360					0.12319475793492529
RPWRRLLE	8	Unmodified	_RPWRRLLE_					0	0	0		ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L3673Pfs*5|1|0.33|ENSG00000112159|chr6:89689875-89689876|-/G|frameshift_variant	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.335693359375	2	563.335624	1124.6567	-0.10356	-5.8338E-05	0.30873	0.00017392	0.20517	0.00011558	563.3358849334818	24.975	0.77955	24.944	24.599	25.378	-0.031408					59	26	3	0	0	0	0.4354	1	3898	3898		10.824	2.9138	1	213640			39741	2416	23085	23086	48361	48361					0.09935355310904015
RPWSNSRGL	9	Unmodified	_RPWSNSRGL_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.7863159179688	2	536.785964	1071.55738	0.39036	0.00020954	0.096957	5.2045E-05	0.48731	0.00026158	536.7859120272083	25.281	0.52699	25.281	25.035	25.562	0					46	17	3	0	0	0	0.053988	2	4007	4007;4055		51.415	26.016	1	414030			39742	7985	23086	23087	48362;48363	48362					0.02445912626126301
RPWSNSRGL	9	Unmodified	_RPWSNSRGL_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.7860717773438	2	536.785964	1071.55738	0.10949	5.8771E-05	0.3043	0.00016334	0.41379	0.00022212	536.7860495554468	25.41	0.60154	25.354	25.102	25.704	-0.055931					43	20	3	0	0	0	0.048637	1	4038	4038		53.404	28.005	1	429870			39743	7985	23086	23087	48364	48364					0.02445912626126301
RPWSNSRGL	9	Unmodified	_RPWSNSRGL_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7861328125	2	536.785964	1071.55738	0.11491	6.168E-05	0.29367	0.00015764	0.40858	0.00021932	536.7860180841005	25.393	0.60991	25.362	25.072	25.682	-0.031408					47	21	3	0	0	0	0.10812	1	4031	4031		37.075	18.928	1	388680			39744	7985	23086	23087	48365	48365					0.02445912626126301
RPWSTGIP	8	Unmodified	_RPWSTGIP_					0	0	0		IL20RA|p.L460Wfs*114|1|0.27|ENSG00000016402|chr6:137001842-137001842|G/-|frameshift_variant	IL20RA|p.L460Wfs*114|1|0.27|ENSG00000016402|chr6:137001842-137001842|G/-|frameshift_variant	IL20RA|p.L460Wfs*114|1|0.27|ENSG00000016402|chr6:137001842-137001842|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.8687438964844	2	457.248152	912.481751	0.22345	0.00010217	2.4381	0.0011148	2.6615	0.001217	457.2494821959938	20.798	0.26202	20.798	20.65	20.912	0					10	8	2	0	0	0	0.34337	1	2633	2633		5.2307	0	1	10299			39745	12429	23087	23088	48366	48366					0.022009354458418784
RPWYDWNQFK	10	Unmodified	_RPWYDWNQFK_					0	0	0			REV__ENST00000558615.5_1_15:49867204-49907386:-|nuORF	REV__ENST00000558615.5_1_15:49867204-49907386:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7502136230469	3	480.566683	1438.67822	0.07402	3.5571E-05	-0.43723	-0.00021012	-0.36321	-0.00017455	480.5666000829156	19.719	0.11267	19.719	19.655	19.768	0					5	3	2	0	0	0	0.32167	1	2301	2301		0.62683	0	1	13427	+		39746	22283	23088	23089	48367	48367					-0.02357304451084019
RPYAPINANAI	11	Unmodified	_RPYAPINANAI_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3300170898438	2	600.330205	1198.64586	0.75987	0.00045617	-0.099931	-5.9992E-05	0.65994	0.00039618	600.3299929762023	45.573	0.54147	45.573	45.291	45.832	0					48	19	3	0	0	0	0.0054331	1	10169	10169		100.09	71.596	1	775040			39747	4869	23089	23090	48368	48368					0.054479081459248846
RPYAPINANAI	11	Unmodified	_RPYAPINANAI_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.83203125	2	600.330205	1198.64586	0.76044	0.00045651	-0.30636	-0.00018392	0.45408	0.0002726	600.3299206921469	45.439	0.64813	45.499	45.223	45.871	0.059837					50	22	3	0	0	0	2.4606E-05	1	10145	10145		110.55	82.058	1	719800			39748	4869	23089	23090	48369	48369					0.054479081459248846
RPYAPINANAI	11	Unmodified	_RPYAPINANAI_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3304443359375	2	600.330205	1198.64586	0.49737	0.00029859	0.019011	1.1413E-05	0.51638	0.00031	600.3300352479349	45.434	0.55831	45.5	45.224	45.782	0.065052					50	20	3	0	0	0	0.002127	2	10127	10127;10184		86.332	61.341	1	877090			39749	4869	23089	23090	48370;48371	48370					0.054479081459248846
RPYCLAKL	8	Unmodified	_RPYCLAKL_					0	0	0			REV__MYH2|p.D1767Mfs*4|1|0.19|ENSG00000125414|chr17:10523762-10523762|A/-|frameshift_variant;REV__ENSG00000109061|ENST00000226207|MYH1	REV__MYH2|p.D1767Mfs*4|1|0.19|ENSG00000125414|chr17:10523762-10523762|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.2769775390625	2	482.275855	962.537157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.217	1	17.157	16.657	17.657	-0.060429								0	0	0	0.36336	1	1562	1562		8.5933	0	1		+		39750	15265;14623	23090	23091	48372	48372					0.05439025641965145
RPYCRRDFL	9	Unmodified	_RPYCRRDFL_					0	0	0		ENST00000564176.5_1_16:31487914-31488894:+|nuORF;nc|ENSG00000140682|O43294-2|TGFB1I1;ENST00000567066.6_1_16:31483405-31488894:+|nuORF;ENSG00000140682|ENST00000394863|TGFB1I1	ENST00000564176.5_1_16:31487914-31488894:+|nuORF	ENST00000564176.5_1_16:31487914-31488894:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.8936767578125	3	409.213475	1224.6186	-0.2521	-0.00010316	-3.7254	-0.0015245	-3.9775	-0.0016276	409.2122725278711	15.893	0.21734	15.893	15.791	16.008	0					10	7	2	0	0	0	0.26252	1	1142	1142		0.86438	0.16671	1	5980.5			39751	4327	23091	23092	48373	48373					0.015271013339088313
RPYEPINSI	9	Unmodified	_RPYEPINSI_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7903442382812	2	544.790381	1087.56621	0.18114	9.8685E-05	-0.085425	-4.6539E-05	0.095718	5.2146E-05	544.7904180831581	42.526	0.73101	42.526	42.277	43.008	0					52	26	3	0	0	0	0.010888	1	9237	9237		78.06	38.111	1	1033000			39752	2616	23092	23093	48374	48374					0.025928414719373905
RPYEPINSI	9	Unmodified	_RPYEPINSI_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.790381	1087.56621	0.64766	0.00035284	-0.65292	-0.00035571	-0.0052645	-2.8681E-06	544.7901638210509	42.216	0.67009	42.301	42.034	42.704	0.085197	-0.052881	-0.00016856	NaN	78.06	54	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1023300			39753	2616	23092	23093							0.025928414719373905
RPYEPINSI	9	Unmodified	_RPYEPINSI_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	544.790381	1087.56621	0.71515	0.00038961	-0.79571	-0.0004335	-0.080558	-4.3887E-05	544.7900824698671	42.144	0.52015	42.235	42.007	42.527	0.091362	-0.119	-0.00032415	NaN	78.06	50	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1072800			39754	2616	23092	23093							0.025928414719373905
RPYFRIVRF	9	Unmodified	_RPYFRIVRF_					0	0	0		ENSG00000092969|ENST00000366930|TGFB2;nc|ENSG00000092969|P61812-2|TGFB2	ENSG00000092969|ENST00000366930|TGFB2	ENSG00000092969|ENST00000366930|TGFB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.580322265625	3	418.580375	1252.7193	-0.23393	-9.7919E-05	-0.24127	-0.00010099	-0.4752	-0.00019891	418.58029440806513	46.228	0.69969	46.228	46.003	46.703	0					63	25	3	0	0	0	0.24247	1	10406	10406		17.443	5.2679	1	1092800			39755	1431	23093	23094	48375	48375					0.10304501379073372
RPYFRIVRF	9	Unmodified	_RPYFRIVRF_					0	0	0		ENSG00000092969|ENST00000366930|TGFB2;nc|ENSG00000092969|P61812-2|TGFB2	ENSG00000092969|ENST00000366930|TGFB2	ENSG00000092969|ENST00000366930|TGFB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.58050537109375	3	418.580375	1252.7193	-0.069339	-2.9024E-05	0.19573	8.1929E-05	0.12639	5.2905E-05	418.5804561455706	45.882	0.74743	45.942	45.677	46.424	0.059834					64	26	3	0	0	0	0.07944	3	10315	10261;10315;10366		41.956	33.511	1	971150			39756	1431	23093	23094	48376;48377;48378	48377					0.10304501379073372
RPYFRIVRF	9	Unmodified	_RPYFRIVRF_					0	0	0		ENSG00000092969|ENST00000366930|TGFB2;nc|ENSG00000092969|P61812-2|TGFB2	ENSG00000092969|ENST00000366930|TGFB2	ENSG00000092969|ENST00000366930|TGFB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.58056640625	3	418.580375	1252.7193	0.2449	0.00010251	-0.038696	-1.6198E-05	0.2062	8.6311E-05	418.5803312826691	45.936	0.91013	46.001	45.703	46.613	0.065048					68	32	3	0	0	0	0.16685	2	10282	10282;10345		28.495	14.089	1	901020			39757	1431	23093	23094	48379;48380	48379					0.10304501379073372
RPYGVGLLI	9	Unmodified	_RPYGVGLLI_					0	0	0		ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.3028564453125	2	494.302927	986.591301	0.42031	0.00020776	0.074714	3.6931E-05	0.49503	0.00024469	494.30286782618015	61.07	0.96355	61.07	60.713	61.677	0					84	35	3	0	0	0	0.044952	1	14979	14979		54.774	14.816	1	5945700			39758	3409	23094	23095	48381	48381					0.09746941065179726
RPYGVGLLI	9	Unmodified	_RPYGVGLLI_					0	0	0		ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.3032531738281	2	494.302927	986.591301	0.41997	0.00020759	0.073855	3.6507E-05	0.49383	0.0002441	494.30283791195444	60.936	0.84012	61.033	60.752	61.592	0.096985					74	30	3	0	0	0	0.019896	2	14955	14902;14955		64.236	30.134	1	6939600			39759	3409	23094	23095	48382;48383	48383					0.09746941065179726
RPYGVGLLI	9	Unmodified	_RPYGVGLLI_					0	0	0		ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	ENSG00000129084|ENST00000396394|PSMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.3031311035156	2	494.302927	986.591301	0.40218	0.0001988	0.084304	4.1672E-05	0.48648	0.00024047	494.3028884330515	61.023	0.93544	61.014	60.708	61.644	-0.0094528					84	34	3	0	0	0	0.068501	2	14953	14953;14999		46.021	16.939	1	7399700			39760	3409	23094	23095	48384;48385	48384					0.09746941065179726
RPYKPVVL	8	Unmodified	_RPYKPVVL_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.3055419921875	2	486.30547	970.596387	0.29293	0.00014245	-0.29027	-0.00014116	0.0026548	1.2911E-06	486.30525399628283	30.531	0.69292	30.531	30.255	30.948	0					50	24	3	0	0	0	0.3671	1	5615	5615		23.148	1.4018	1	562530			39761	929	23095	23096	48386	48386					0.10991244927799926
RPYKPVVL	8	Unmodified	_RPYKPVVL_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.3055419921875	2	486.30547	970.596387	0.053507	2.6021E-05	0.10993	5.3459E-05	0.16344	7.948E-05	486.3054440956824	30.534	0.72482	30.561	30.25	30.975	0.027159					50	25	3	0	0	0	0.32038	1	5571	5571		28.487	0	1	488090			39762	929	23095	23096	48387	48387					0.10991244927799926
RPYKPVVLL	9	Unmodified	_RPYKPVVLL_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8477172851562	2	542.847502	1083.68045	0.27793	0.00015088	0.22748	0.00012349	0.50541	0.00027436	542.8475579532727	42.649	0.73354	42.649	42.383	43.116	0					58	26	3	0	0	0	0.19747	1	9347	9347		24.021	2.2739	1	828660			39763	929	23096	23097	48388	48388					0.1419577602471236
RPYKPVVLL	9	Unmodified	_RPYKPVVLL_					0	0	0		nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8473510742188	2	542.847502	1083.68045	0.42389	0.00023011	0.0032163	1.746E-06	0.42711	0.00023186	542.8474465066419	42.515	0.67953	42.6	42.323	43.003	0.085197					55	24	3	0	0	0	0.19747	1	9257	9257		24.021	2.2739	1	790920			39764	929	23096	23097	48389	48389					0.1419577602471236
RPYLIPRPLSL	11	Unmodified	_RPYLIPRPLSL_					0	0	0		ENST00000380702.6_2_19:10578104-10578401:+|nuORF	ENST00000380702.6_2_19:10578104-10578401:+|nuORF	ENST00000380702.6_2_19:10578104-10578401:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.27490234375	3	442.27484	1323.80269	0.51237	0.00022661	0.14599	6.457E-05	0.65837	0.00029118	442.27493728202614	50.976	2.1233	50.986	50.002	52.126	0.0095634					130	79	3	0	0	0	0.44088	1	11669	11669		5.8681	0.46543	1	6148300			39765	9985	23097	23098	48390	48390					0.1537419303626848
RPYLSAVRATL	11	Unmodified	_RPYLSAVRATL_					0	0	0		nc|ENSG00000241553|P59998-2|ARPC4;ENST00000479956.1_1_3:9834805-9839462:+|nuORF;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.86669921875	2	623.866954	1245.71936	0.43237	0.00026974	-0.65034	-0.00040572	-0.21796	-0.00013598	623.8665426452577	44.371	0.56834	44.371	44.115	44.684	0					44	20	3	0	0	0	0.043061	1	9844	9844		55.249	32.512	1	754630			39766	12965	23098	23099	48391	48391					0.10632456588405148
RPYLSAVRATL	11	Unmodified	_RPYLSAVRATL_					0	0	0		nc|ENSG00000241553|P59998-2|ARPC4;ENST00000479956.1_1_3:9834805-9839462:+|nuORF;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.2470703125	3	416.247062	1245.71936	0.075218	3.1309E-05	-0.29298	-0.00012195	-0.21776	-9.0642E-05	416.24697185204644	44.412	0.64542	44.412	44.065	44.71	0					57	23	3	0	0	0	0.001595	1	9870	9870		68.83	58.515	1	1072800			39767	12965	23098	23099	48392	48392					0.10632456588405148
RPYLSAVRATL	11	Unmodified	_RPYLSAVRATL_					0	0	0		nc|ENSG00000241553|P59998-2|ARPC4;ENST00000479956.1_1_3:9834805-9839462:+|nuORF;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.24688720703125	3	416.247062	1245.71936	0.3198	0.00013312	-0.48807	-0.00020316	-0.16827	-7.0042E-05	416.24681889375313	44.126	0.68799	44.204	43.92	44.608	0.077515					66	25	4	0	0	0	0.00069591	1	9755	9755		79.705	62.657	1	1137400			39768	12965	23098	23099	48393	48393					0.10632456588405148
RPYLSAVRATL	11	Unmodified	_RPYLSAVRATL_					0	0	0		nc|ENSG00000241553|P59998-2|ARPC4;ENST00000479956.1_1_3:9834805-9839462:+|nuORF;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.8667602539062	2	623.866954	1245.71936	0.14653	9.1416E-05	-0.53795	-0.00033561	-0.39142	-0.00024419	623.8666968769695	44.126	0.52309	44.204	43.999	44.522	0.077515					42	19	3	0	0	0	0.0017529	1	9762	9762		87.123	52.722	1	742000			39769	12965	23098	23099	48394	48394					0.10632456588405148
RPYLSAVRATL	11	Unmodified	_RPYLSAVRATL_					0	0	0		nc|ENSG00000241553|P59998-2|ARPC4;ENST00000479956.1_1_3:9834805-9839462:+|nuORF;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.5811462402344	3	416.247062	1245.71936	0.17406	7.245E-05	-0.39959	-0.00016633	-0.22554	-9.388E-05	416.2468989349334	44.076	0.97789	44.16	43.866	44.844	0.083996					77	35	3	0	0	0	4.6059E-05	1	9735	9735		87.214	65.415	1	1120000			39770	12965	23098	23099	48395	48395					0.10632456588405148
RPYLSAVRATL	11	Unmodified	_RPYLSAVRATL_					0	0	0		nc|ENSG00000241553|P59998-2|ARPC4;ENST00000479956.1_1_3:9834805-9839462:+|nuORF;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3683471679688	2	623.866954	1245.71936	0.16129	0.00010063	-0.36021	-0.00022472	-0.19891	-0.0001241	623.8666575362039	44.1	0.56964	44.184	43.995	44.565	0.083992					45	20	3	0	0	0	0.0086212	1	9752	9752		72.59	53.228	1	688210			39771	12965	23098	23099	48396	48396					0.10632456588405148
RPYPSPGAVL	10	Unmodified	_RPYPSPGAVL_					0	0	0		ENST00000463529.4_1_X:48760076-48760358:+|nuORF;nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;ENSG00000102103|ENST00000447146|PQBP1	ENST00000463529.4_1_X:48760076-48760358:+|nuORF	ENST00000463529.4_1_X:48760076-48760358:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7957763671875	2	528.795466	1055.57638	0.71736	0.00037934	-0.42539	-0.00022495	0.29196	0.00015439	528.795244284897	45.52	1.1428	45.52	44.802	45.945	0					86	41	3	0	0	0	0.21213	1	10182	10182		47.594	28.337	1	721040			39772	1746	23099	23100	48397	48397					0.0508144919717779
RPYPSPGAVL	10	Unmodified	_RPYPSPGAVL_					0	0	0		ENST00000463529.4_1_X:48760076-48760358:+|nuORF;nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;ENSG00000102103|ENST00000447146|PQBP1	ENST00000463529.4_1_X:48760076-48760358:+|nuORF	ENST00000463529.4_1_X:48760076-48760358:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7955932617188	2	528.795466	1055.57638	0.61916	0.00032741	-0.33072	-0.00017488	0.28844	0.00015253	528.7953078856178	45.275	1.0129	45.34	44.863	45.876	0.065105					86	35	3	0	0	0	0.13784	1	10167	10167		40.239	22.093	1	788060			39773	1746	23099	23100	48398	48398					0.0508144919717779
RPYPSPGAVL	10	Unmodified	_RPYPSPGAVL_					0	0	0		ENST00000463529.4_1_X:48760076-48760358:+|nuORF;nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;ENSG00000102103|ENST00000447146|PQBP1	ENST00000463529.4_1_X:48760076-48760358:+|nuORF	ENST00000463529.4_1_X:48760076-48760358:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7955932617188	2	528.795466	1055.57638	0.60927	0.00032218	-0.47574	-0.00025157	0.13354	7.0614E-05	528.7952928717715	45.325	0.95704	45.39	44.825	45.782	0.065048					84	35	3	0	0	0	0.26476	1	10131	10131		33.445	17.598	1	806470			39774	1746	23099	23100	48399	48399					0.0508144919717779
RPYQYLRRF	9	Unmodified	_RPYQYLRRF_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.57501220703125	3	433.575401	1297.70437	0.071562	3.1027E-05	-0.3616	-0.00015678	-0.29004	-0.00012575	433.5751798289156	33.641	1.6058	33.641	33.119	34.725	0					163	57	5	0	0	0	0.048637	2	6524	6524;6576		53.404	39.233	1	2488500			39775	6752	23100	23101	48400;48401	48400					0.06743009511069431
RPYQYLRRF	9	Unmodified	_RPYQYLRRF_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.5751647949219	3	433.575401	1297.70437	0.19749	8.5628E-05	-0.56881	-0.00024662	-0.37132	-0.00016099	433.5751281012918	33.384	1.4133	33.45	33.074	34.487	0.06636					134	50	4	0	0	0	0.048637	2	6496	6448;6496		53.404	39.233	1	3212600			39776	6752	23100	23101	48402;48403	48403					0.06743009511069431
RPYQYLRRF	9	Unmodified	_RPYQYLRRF_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.5750732421875	3	433.575401	1297.70437	-0.23922	-0.00010372	-0.099607	-4.3187E-05	-0.33883	-0.00014691	433.5752694541251	33.465	1.5218	33.532	33.055	34.577	0.066704					154	54	5	0	0	0	0.011693	2	6459	6459;6510		76.825	61.987	1	3459400			39777	6752	23100	23101	48404;48405	48404					0.06743009511069431
RPYRIADRE	9	Unmodified	_RPYRIADRE_					0	0	0			REV__ENSG00000024048|ENST00000372901|UBR2	REV__ENSG00000024048|ENST00000372901|UBR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3179931640625	2	588.317628	1174.6207	0.33006	0.00019418	0.090171	5.3049E-05	0.42023	0.00024723	588.3176619130461	21.815	1.2264	21.815	21.368	22.594	0					124	43	4	0	0	0	0.31763	1	3089	3089		6.2058	0	1	2392800	+		39778	13477	23101	23102	48406	48406					0.04037853343356801
RPYSFFTKL	9	Unmodified	_RPYSFFTKL_					0	0	0		ENSG00000144029|ENST00000272418|MRPS5;nc|ENSG00000144029|P82675-2|MRPS5;ENST00000475895.5_1_2:95770271-95787536:-|nuORF	ENSG00000144029|ENST00000272418|MRPS5	ENSG00000144029|ENST00000272418|MRPS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.8200073242188	2	579.818941	1157.62333	0.60123	0.00034861	1.3364	0.00077488	1.9376	0.0011235	579.8199303421688	50.918	0.64106	50.918	50.713	51.354	0					67	23	4	0	0	0	0.023171	2	11880	11832;11880		62.869	35.361	1	1360800			39779	4559	23102	23103	48407;48408	48408					0.050823087483195195
RPYSFFTKL	9	Unmodified	_RPYSFFTKL_					0	0	0		ENSG00000144029|ENST00000272418|MRPS5;nc|ENSG00000144029|P82675-2|MRPS5;ENST00000475895.5_1_2:95770271-95787536:-|nuORF	ENSG00000144029|ENST00000272418|MRPS5	ENSG00000144029|ENST00000272418|MRPS5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	579.818941	1157.62333	0.50179	0.00029095	1.4065	0.00081553	1.9083	0.0011065	579.8198833963943	51.079	0.61776	51.089	50.835	51.452	0.0095634	0.11605	-0.00011177	NaN	62.869	67	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1747500			39780	4559	23102	23103							0.050823087483195195
RPYSHALVA	9	Unmodified	_RPYSHALVA_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.7734375	2	507.279983	1012.54541	0.37225	0.00018883	0.37519	0.00019033	0.74744	0.00037916	507.2801670006507	23.887	0.45371	23.848	23.681	24.135	-0.038927					21	15	2	0	0	0	0.30459	1	3573	3573		8.1555	0.24537	1	77423			39781	3568	23103	23104	48409	48409					0.03964295882940405
RPYSHALVA	9	Unmodified	_RPYSHALVA_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.279983	1012.54541	0.37225	0.00018883	0.37519	0.00019033	0.74744	0.00037916	507.2801670006507	23.887	0.45371	23.848	23.681	24.135	-0.038927	-0.011569	-0.00014877	NaN	8.1555	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77423			39782	3568	23103	23104							0.03964295882940405
RPYSKHLI	8	Unmodified	_RPYSKHLI_					0	0	0		ENST00000342992.10_3_2:179494164-179495619:-|nuORF	ENST00000342992.10_3_2:179494164-179495619:-|nuORF	ENST00000342992.10_3_2:179494164-179495619:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2964172363281	2	507.298176	1012.5818	0.58241	0.00029546	-3.2442	-0.0016458	-2.6618	-0.0013503	507.29613043891925	20.769	0.68374	20.659	20.35	21.034	-0.11003					45	23	3	0	0	0	0.41087	1	2654	2654		18.146	0.011366	1	139740			39783	9537	23104	23105	48410	48410					0.07601172779664012
RPYSLLVYI	9	Unmodified	_RPYSLLVYI_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3292846679688	2	562.329142	1122.64373	0.32433	0.00018238	0.26313	0.00014796	0.58746	0.00033035	562.3292178197048	71.385	0.78516	71.385	71.07	71.855	0					63	27	3	0	0	0	0.13748	2	18131	18131;18150		32.786	15.673	1	1171000			39784	2568	23105	23106	48411;48412	48411					0.08731479408129417
RPYSMKLTI	9	Oxidation (M)	_RPYSM(Oxidation (M))KLTI_		RPYSM(1)KLTI		RPYSM(63)KLTI	0	0	1		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8106079101562	2	562.810259	1123.60597	0.56738	0.00031933	-0.33489	-0.00018848	0.23249	0.00013085	562.809896234103	32.645	0.85173	32.7	32.182	33.033	0.055313					82	30	3	0	0	0	0.022205	1	6230	6230		63.227	19.369	1	719630			39785	4929	23106	23107	48413	48413		609			0.04910645150994242
RPYSMKLTI	9	Oxidation (M)	_RPYSM(Oxidation (M))KLTI_		RPYSM(1)KLTI		RPYSM(55)KLTI	0	0	1		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8104248046875	2	562.810259	1123.60597	0.28362	0.00015963	-0.32617	-0.00018357	-0.042548	-2.3947E-05	562.8100519607501	32.594	0.89638	32.649	32.223	33.119	0.054371					45	32	2	0	0	0	0.043711	1	6262	6262		55.235	19.108	1	717160			39786	4929	23106	23107	48414	48414		609			0.04910645150994242
RPYSNVSNL	9	Unmodified	_RPYSNVSNL_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2474365234375	2	525.272355	1048.53016	0.54689	0.00028727	-1.1899	-0.00062501	-0.64299	-0.00033774	525.271672301829	31.964	0.80646	32.005	31.89	32.696	0.040991					47	28	3	0	0	0	0.22701	1	6063	6063		23.79	4.5328	1	915220			39787	1550	23107	23108	48415	48415					0.00783384295095857
RPYSQVNVL	9	Unmodified	_RPYSQVNVL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant;UTRN|p.I1307Nfs*3|1|0.28|ENSG00000152818|chr6:144487642-144487643|-/A|frameshift_variant	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.298583984375	2	538.298373	1074.58219	0.34722	0.00018691	0.36798	0.00019808	0.7152	0.00038499	538.2984624324833	41.42	0.50909	41.42	41.069	41.578	0					52	18	4	0	0	0	0.038291	2	8928	8882;8928		57.249	35.712	1	3194700			39788	5043	23108	23109	48416;48417	48417					0.047885477088584594
RPYSQVNVL	9	Unmodified	_RPYSQVNVL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant;UTRN|p.I1307Nfs*3|1|0.28|ENSG00000152818|chr6:144487642-144487643|-/A|frameshift_variant	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2987670898438	2	538.298373	1074.58219	0.34318	0.00018474	0.53114	0.00028591	0.87433	0.00047065	538.2984760939578	41.152	0.55943	41.243	40.952	41.511	0.090248					61	20	4	0	0	0	0.0091837	2	8826	8826;8875		80.676	54.408	1	2919600			39789	5043	23108	23109	48418;48419	48418					0.047885477088584594
RPYSQVNVL	9	Unmodified	_RPYSQVNVL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant;UTRN|p.I1307Nfs*3|1|0.28|ENSG00000152818|chr6:144487642-144487643|-/A|frameshift_variant	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2986450195312	2	538.298373	1074.58219	0.35781	0.00019261	0.29389	0.0001582	0.6517	0.00035081	538.298380303095	41.069	0.6202	41.166	40.857	41.477	0.096626					68	22	5	0	0	0	0.032589	1	8802	8802		59.368	31.74	1	2971300			39790	5043	23108	23109	48420	48420					0.047885477088584594
RPYSRYDR	8	Unmodified	_RPYSRYDR_					0	0	0		nc|ENSG00000083544|Q9H7E2-2|TDRD3;nc|ENSG00000083544|Q9H7E2|TDRD3;ENSG00000083544|ENST00000377881|TDRD3	nc|ENSG00000083544|Q9H7E2-2|TDRD3	nc|ENSG00000083544|Q9H7E2-2|TDRD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.77978515625	2	556.783422	1111.55229	0.24716	0.00013761	-3.1131	-0.0017333	-2.866	-0.0015957	556.779859270954	16.629	0.84142	16.567	16.235	17.077	-0.062532					62	29	3	0	0	0	0.45431	1	1459	1459		4.3292	0	1	155360			39791	1224	23109	23110	48421	48421					0.0009760876350810577
RPYTNKVITL	10	Unmodified	_RPYTNKVITL_					0	0	0		nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.S1017Ffs*5|1|0.07|ENSG00000167258|chr17:39520040-39520041|-/TTCTCAAATTTGTA|frameshift_variant;CDK12|p.I1188Tfs*27|1|0.35|ENSG00000167258|chr17:39526119-39526119|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12	nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.856201171875	2	602.856055	1203.69756	0.89461	0.00053932	-0.42216	-0.0002545	0.47245	0.00028482	602.8555611237329	37.43	0.63866	37.43	37.207	37.846	0					52	22	3	0	0	0	0.024262	2	7704	7704;7757		67.081	23.308	1	813890			39792	6163;827	23110	23111	48422;48423	48422					0.10385651839851562
RPYTNKVITL	10	Unmodified	_RPYTNKVITL_					0	0	0		nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.S1017Ffs*5|1|0.07|ENSG00000167258|chr17:39520040-39520041|-/TTCTCAAATTTGTA|frameshift_variant;CDK12|p.I1188Tfs*27|1|0.35|ENSG00000167258|chr17:39526119-39526119|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12	nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.85595703125	2	602.856055	1203.69756	0.57154	0.00034455	-0.19997	-0.00012055	0.37156	0.000224	602.8556445755914	37.345	0.67588	37.433	37.169	37.845	0.08741					67	24	4	0	0	0	0.049822	2	7667	7667;7716		59.052	22.546	1	820590			39793	6163;827	23110	23111	48424;48425	48424					0.10385651839851562
RPYTNKVITL	10	Unmodified	_RPYTNKVITL_					0	0	0		nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.S1017Ffs*5|1|0.07|ENSG00000167258|chr17:39520040-39520041|-/TTCTCAAATTTGTA|frameshift_variant;CDK12|p.I1188Tfs*27|1|0.35|ENSG00000167258|chr17:39526119-39526119|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12	nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8565063476562	2	602.856055	1203.69756	0.43964	0.00026504	0.065313	3.9374E-05	0.50496	0.00030442	602.8559626251576	37.33	0.56534	37.423	37.17	37.735	0.093018					53	20	3	0	0	0	0.024262	2	7641	7641;7691		67.081	26.362	1	750050			39794	6163;827	23110	23111	48426;48427	48426					0.10385651839851562
RPYVIEDEG	9	Unmodified	_RPYVIEDEG_					0	0	0			REV__ENSG00000170074|ENST00000614127|FAM153A	REV__ENSG00000170074|ENST00000614127|FAM153A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3135375976562	2	539.264196	1076.51384	0.26993	0.00014556	-0.14863	-8.0149E-05	0.12131	6.5416E-05	539.2642701630947	23.238	0.76278	23.238	22.936	23.699	0					65	26	4	0	0	0	0.26168	1	3504	3504		1.8442	0	1	378310	+		39795	17561	23111	23112	48428	48428					-0.021357416616638147
RPYYEARRL	9	Unmodified	_RPYYEARRL_					0	0	0		ENST00000494837.1_1_1:249110711-249111038:-|nuORF;ENST00000475978.1_1_1:249109001-249111077:-|nuORF;nc|ENSG00000175137|Q7L8J4-2|SH3BP5L;ENSG00000175137|ENST00000366472|SH3BP5L	ENST00000494837.1_1_1:249110711-249111038:-|nuORF	ENST00000494837.1_1_1:249110711-249111038:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.5595703125	3	408.55964	1222.65709	-0.21052	-8.6012E-05	0.036703	1.4996E-05	-0.17382	-7.1016E-05	408.5595663148433	23.725	0.85761	23.725	23.362	24.22	0					58	26	3	0	0	0	0.07848	1	3537	3537		42.312	29.44	1	311260			39796	6840	23112	23113	48429	48429					0.05466730240073048
RPYYEARRL	9	Unmodified	_RPYYEARRL_					0	0	0		ENST00000494837.1_1_1:249110711-249111038:-|nuORF;ENST00000475978.1_1_1:249109001-249111077:-|nuORF;nc|ENSG00000175137|Q7L8J4-2|SH3BP5L;ENSG00000175137|ENST00000366472|SH3BP5L	ENST00000494837.1_1_1:249110711-249111038:-|nuORF	ENST00000494837.1_1_1:249110711-249111038:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.911865234375	3	408.55964	1222.65709	-0.011337	-4.6318E-06	-0.23713	-9.6881E-05	-0.24846	-0.00010151	408.5594819774518	23.95	0.8709	23.877	23.396	24.267	-0.072559					66	26	3	0	0	0	0.25676	1	3675	3675		8.4443	4.568	1	275460			39797	6840	23112	23113	48430	48430					0.05466730240073048
RPYYEARRL	9	Unmodified	_RPYYEARRL_					0	0	0		ENST00000494837.1_1_1:249110711-249111038:-|nuORF;ENST00000475978.1_1_1:249109001-249111077:-|nuORF;nc|ENSG00000175137|Q7L8J4-2|SH3BP5L;ENSG00000175137|ENST00000366472|SH3BP5L	ENST00000494837.1_1_1:249110711-249111038:-|nuORF	ENST00000494837.1_1_1:249110711-249111038:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.91192626953125	3	408.55964	1222.65709	0.090308	3.6896E-05	-0.22368	-9.1386E-05	-0.13337	-5.449E-05	408.55944556962754	24	0.65848	23.961	23.62	24.278	-0.038927					53	21	3	0	0	0	0.25962	1	3686	3686		5.4027	2.9679	1	315230			39798	6840	23112	23113	48431	48431					0.05466730240073048
RPYYPRKALL	10	Unmodified	_RPYYPRKALL_					0	0	0		ENST00000474235.1_1_22:39496283-39496472:+|nuORF;nc|ENSG00000100298|Q6NTF7-4|APOBEC3H;nc|ENSG00000100298|Q6NTF7-2|APOBEC3H;ENSG00000100298|ENST00000442487|APOBEC3H;nc|ENSG00000100298|Q6NTF7|APOBEC3H	ENST00000474235.1_1_22:39496283-39496472:+|nuORF	ENST00000474235.1_1_22:39496283-39496472:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.25567626953125	3	426.255669	1275.74518	-0.17545	-7.4788E-05	0.17035	7.2611E-05	-0.0051089	-2.1777E-06	426.25566728972467	31.602	0.75773	31.602	31.361	32.119	0					51	26	3	0	0	0	0.22625	1	5904	5904		29.437	10.293	1	652720			39799	1563	23113	23114	48432	48432					0.11833350830715972
RPYYPRKALL	10	Unmodified	_RPYYPRKALL_					0	0	0		ENST00000474235.1_1_22:39496283-39496472:+|nuORF;nc|ENSG00000100298|Q6NTF7-4|APOBEC3H;nc|ENSG00000100298|Q6NTF7-2|APOBEC3H;ENSG00000100298|ENST00000442487|APOBEC3H;nc|ENSG00000100298|Q6NTF7|APOBEC3H	ENST00000474235.1_1_22:39496283-39496472:+|nuORF	ENST00000474235.1_1_22:39496283-39496472:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2557373046875	3	426.255669	1275.74518	-0.15877	-6.7679E-05	0.13851	5.904E-05	-0.020266	-8.6386E-06	426.25577130370334	31.546	0.59516	31.589	31.399	31.994	0.042364					36	20	2	0	0	0	0.31396	1	5920	5920		18.721	0.34813	1	891650			39800	1563	23113	23114	48433	48433					0.11833350830715972
RPYYPRKALL	10	Unmodified	_RPYYPRKALL_					0	0	0		ENST00000474235.1_1_22:39496283-39496472:+|nuORF;nc|ENSG00000100298|Q6NTF7-4|APOBEC3H;nc|ENSG00000100298|Q6NTF7-2|APOBEC3H;ENSG00000100298|ENST00000442487|APOBEC3H;nc|ENSG00000100298|Q6NTF7|APOBEC3H	ENST00000474235.1_1_22:39496283-39496472:+|nuORF	ENST00000474235.1_1_22:39496283-39496472:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.2552490234375	3	426.255669	1275.74518	-0.040411	-1.7226E-05	0.02907	1.2391E-05	-0.011341	-4.8341E-06	426.2556557943702	31.618	0.61521	31.659	31.334	31.949	0.040991					44	21	3	0	0	0	0.22625	1	5897	5897		29.437	12.389	1	706300			39801	1563	23113	23114	48434	48434					0.11833350830715972
RQAGLLMI	8	Unmodified	_RQAGLLMI_					0	0	0			REV__ENST00000498612.1_1_19:54622012-54631467:+|nuORF	REV__ENST00000498612.1_1_19:54622012-54631467:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.9326171875	2	451.26803	900.521507	0.12681	5.7224E-05	0.94484	0.00042638	1.0716	0.0004836	451.2674758502406	92.505	0.13826	92.505	92.431	92.57	0					10	9	2	0	0	0	0.34319	1	24588	24588		2.5775	0.27475	1	45504	+		39802	14469	23114	23115	48435	48435					0.06726739124906089
RQAKRAQKEE	10	Unmodified	_RQAKRAQKEE_					0	0	0			REV__nc|ENSG00000198171|Q96HY6-2|DDRGK1	REV__nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8489990234375	2	622.346917	1242.67928	0.40395	0.0002514	0.48071	0.00029917	0.88466	0.00055056	622.3470178361868	83.945	1.6275	83.928	83.346	84.973	-0.016823					115	69	2	0	0	0	0.39935	1	22035	22035		3.5965	0	1	385910	+		39803	18805	23115	23116	48436	48436					0.06764909917842488
RQALAPRG	8	Unmodified	_RQALAPRG_					0	0	0			REV__ENST00000476284.1_1_22:50964673-50968379:-|nuORF	REV__ENST00000476284.1_1_22:50964673-50968379:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.2747497558594	2	434.759218	867.503883	-0.11565	-5.0279E-05	-0.76609	-0.00033306	-0.88174	-0.00038334	434.75918341685417	81.399	1.1898	81.399	80.92	82.11	0					73	51	2	0	0	0	0.34408	1	21107	21107		0.6015	0	1	134530	+		39804	21419	23116	23117	48437	48437					0.06483159914284897
RQALAPRG	8	Unmodified	_RQALAPRG_					0	0	0			REV__ENST00000476284.1_1_22:50964673-50968379:-|nuORF	REV__ENST00000476284.1_1_22:50964673-50968379:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	434.759218	867.503883	-0.060731	-2.6403E-05	-0.70462	-0.00030634	-0.76535	-0.00033274	434.75911016057984	81.54	1.3762	81.516	80.817	82.193	-0.02404	0.058105	2.8222E-05	NaN	0.6015	77	58	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149620	+		39805	21419	23116	23117							0.06483159914284897
RQALKFLTQI	10	Unmodified	_RQALKFLTQI_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;PLEKHM1|p.L980Hfs*3|1|0.04|ENSG00000225190|chr17:45439599-45439600|-/TATGC|frameshift_variant;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.5835876464844	3	406.583674	1216.72919	-0.27184	-0.00011053	0.49784	0.00020242	0.226	9.1889E-05	406.58387923345845	103.65	0.087799	103.66	103.59	103.68	0.0082703					15	12	2	0	0	0	0.32137	1	27532	27532		1.7423	0	1	1977000			39806	8445	23117	23118	48438	48438					0.12949644593800258
RQALKFLTQI	10	Unmodified	_RQALKFLTQI_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;PLEKHM1|p.L980Hfs*3|1|0.04|ENSG00000225190|chr17:45439599-45439600|-/TATGC|frameshift_variant;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	406.583674	1216.72919	-0.48115	-0.00019563	1.1525	0.00046858	0.67133	0.00027295	406.5841177808658	103.66	0.30725	103.66	103.61	103.92	0	0.0028334	0.00012725	NaN	1.7423	51	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3992800			39807	8445	23117	23118							0.12949644593800258
RQARRQAQLR	10	Unmodified	_RQARRQAQLR_					0	0	0			REV__nc|ENSG00000198171|Q96HY6-2|DDRGK1	REV__nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8824462890625	2	641.881793	1281.74903	0.25607	0.00016436	0.85767	0.00055052	1.1137	0.00071489	641.8819716438993	115.58	0.72771	115.56	115.3	116.03	-0.020988					134	90	2	0	0	0	0.41673	1	29950	29950		0.40072	0.40072	1	41127	+		39808	18805	23118	23119	48439	48439					0.11942833377111128
RQARRQAQLR	10	Unmodified	_RQARRQAQLR_					0	0	0			REV__nc|ENSG00000198171|Q96HY6-2|DDRGK1	REV__nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	641.881793	1281.74903	-0.017518	-1.1244E-05	1.3186	0.00084636	1.301	0.00083511	641.8820600820632	115.22	0.47306	115.22	114.91	115.38	0	-0.16952	0.00044182	NaN	0.40072	96	59	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33865	+		39809	18805	23118	23119							0.11942833377111128
RQAVPLFSK	9	Unmodified	_RQAVPLFSK_					0	0	0		nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-5|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3114624023438	2	523.311284	1044.60801	0.61177	0.00032015	0.34522	0.00018066	0.95699	0.0005008	523.3113093385936	32.706	0.59575	32.706	32.415	33.011	0					46	20	3	0	0	0	0.0037449	1	6257	6257		96.367	32.406	1	526770			39810	6041	23119	23120	48440	48440					0.0874944195113585
RQAVPLFSK	9	Unmodified	_RQAVPLFSK_					0	0	0		nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-5|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3116455078125	2	523.311284	1044.60801	0.59548	0.00031162	0.34044	0.00017816	0.93592	0.00048978	523.311364363735	32.625	0.62887	32.68	32.344	32.973	0.055309					51	22	3	0	0	0	0.003673	1	6228	6228		96.936	41.433	1	675630			39811	6041	23119	23120	48441	48441					0.0874944195113585
RQAVPLFSK	9	Unmodified	_RQAVPLFSK_					0	0	0		nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;nc|ENSG00000166181|Q9BZZ5-6|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-5|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	nc|ENSG00000166181|Q9BZZ5-2|API5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3114013671875	2	523.311284	1044.60801	0.48282	0.00025267	0.45273	0.00023692	0.93555	0.00048959	523.3113982325581	32.592	0.51629	32.646	32.415	32.931	0.054371					47	18	4	0	0	0	0.015027	2	6217	6217;6269		71.708	27.454	1	533970			39812	6041	23119	23120	48442;48443	48442					0.0874944195113585
RQDPRRVGRK	10	Unmodified	_RQDPRRVGRK_					0	0	0			REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF	REV__ENST00000532818.5_2_11:62473033-62477109:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3784790039062	2	634.376343	1266.73813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.88	1	111.86	111.36	112.36	-0.015625								0	0	0	0.37807	1	29106	29106		2.9952	0.49676	1		+		39813	22035	23120	23121	48444	48444					0.11543431002814941
RQEAAIAKA	9	Unmodified	_RQEAAIAKA_					0	0	0			REV__ENSG00000171316|ENST00000423902|CHD7	REV__ENSG00000171316|ENST00000423902|CHD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.27734375	2	479.277441	956.540328	0.39285	0.00018828	-0.28276	-0.00013552	0.11009	5.2763E-05	479.2772159021679	75.409	1.3658	75.378	75.005	76.37	-0.031487					98	50	2	0	0	0	0.32371	1	19590	19590		5.2969	0	1	2627700	+		39814	17631	23121	23122	48445	48445					0.06031992020302823
RQEDHLFKV	9	Unmodified	_RQEDHLFKV_					0	0	0			REV__nc|ENSG00000149305|O95264-2|HTR3B	REV__nc|ENSG00000149305|O95264-2|HTR3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8134765625	2	586.314554	1170.61456	0.37903	0.00022223	-0.046307	-2.715E-05	0.33272	0.00019508	586.3142773649563	90.677	0.59073	90.677	90.238	90.829	0					67	45	2	0	0	0	0.26031	1	24020	24020		3.5965	0	1	147270	+		39815	16459	23122	23123	48446	48446					0.036073351118375285
RQEETVTI	8	Unmodified	_RQEETVTI_					0	0	0			REV__nc|ENSG00000119684|Q9UHC1-2|MLH3	REV__nc|ENSG00000119684|Q9UHC1-2|MLH3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2486877441406	2	488.258914	974.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.627	1	90.628	90.128	91.128	0.0003891								0	0	0	0.36336	1	24019	24019		8.5933	1.304	1		+		39816	15052	23123	23124	48447	48447					0.01500275683918062
RQELEQHSV	9	Unmodified	_RQELEQHSV_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8128051757812	2	563.285994	1124.55744	0.17539	9.8792E-05	-2.2914	-0.0012907	-2.116	-0.0011919	563.2847650522498	93.275	0.26338	93.275	93.135	93.398	0					31	22	3	0	0	0	0.25843	1	24862	24862		5.7319	0	1	56921			39817	276	23124	23125	48448	48448					0.00013867835446035315
RQELEQHSV	9	Unmodified	_RQELEQHSV_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	563.285994	1124.55744	0.39389	0.00022187	-2.642	-0.0014882	-2.2481	-0.0012663	563.2845772177224	93.315	0.41791	93.315	93.105	93.523	-0.00051117	0.020044	-0.00011155	NaN	5.7319	53	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82922			39818	276	23124	23125							0.00013867835446035315
RQELIYKR	8	Unmodified	_RQELIYKR_					0	0	0		ENSG00000269113|ENST00000606738|TRABD2B	ENSG00000269113|ENST00000606738|TRABD2B	ENSG00000269113|ENST00000606738|TRABD2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8107299804688	2	553.327465	1104.64038	0.45561	0.0002521	-0.080285	-4.4424E-05	0.37532	0.00020768	553.3274947956221	35.854	0.35025	35.941	35.762	36.113	0.08625					19	12	2	0	0	0	0.45431	1	7268	7268		4.3292	0	1	116410			39819	8688	23125	23126	48449	48449					0.09224229354117597
RQERKVAV	8	Unmodified	_RQERKVAV_					0	0	0			REV__ENSG00000118898|ENST00000345988|PPL	REV__ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.39935302734375	2	493.298707	984.582862	0.11358	5.6031E-05	-0.58473	-0.00028845	-0.47115	-0.00023242	493.298409359191	12.165	0.3443	12.068	11.979	12.324	-0.096607					29	13	3	0	0	0	0.46461	1	35	35		0.79363	0	1	136370	+		39820	15023	23126	23127	48450	48450					0.08995387148559075
RQERKVAV	8	Unmodified	_RQERKVAV_					0	0	0			REV__ENSG00000118898|ENST00000345988|PPL	REV__ENSG00000118898|ENST00000345988|PPL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.39935302734375	2	493.298707	984.582862	0.11358	5.6031E-05	-0.58473	-0.00028845	-0.47115	-0.00023242	493.298409359191	12.165	0.3443	12.068	11.979	12.324	-0.096607					29	13	3	0	0	0	0.34434	1	35	35		0.79363	0	1	136370	+		39821	15023	23126	23127	48451	48451					0.08995387148559075
RQFDNFKRVFK	11	Unmodified	_RQFDNFKRVFK_					0	0	0		ENST00000532679.5_1_11:65653270-65655931:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP	ENST00000532679.5_1_11:65653270-65655931:-|nuORF	ENST00000532679.5_1_11:65653270-65655931:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2546691894531	3	495.608882	1483.80482	0.5913	0.00029305	-0.61882	-0.0003067	-0.027523	-1.3641E-05	495.6084819911082	33.622	1.1029	33.622	33.259	34.362	0					95	39	3	0	0	0	0.28939	1	6541	6541		28.271	9.1266	1	706720			39822	6641	23127	23128	48452	48452					0.08226621774042542
RQFDNFKRVFK	11	Unmodified	_RQFDNFKRVFK_					0	0	0		ENST00000532679.5_1_11:65653270-65655931:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP	ENST00000532679.5_1_11:65653270-65655931:-|nuORF	ENST00000532679.5_1_11:65653270-65655931:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.25433349609375	3	495.608882	1483.80482	0.62645	0.00031048	-0.76639	-0.00037983	-0.13994	-6.9355E-05	495.60850104458655	33.357	0.74822	33.424	33.182	33.93	0.066357					79	26	4	0	0	0	0.30282	1	6464	6464		29.291	7.1825	1	942660			39823	6641	23127	23128	48453	48453					0.08226621774042542
RQFDNFKRVFK	11	Unmodified	_RQFDNFKRVFK_					0	0	0		ENST00000532679.5_1_11:65653270-65655931:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP	ENST00000532679.5_1_11:65653270-65655931:-|nuORF	ENST00000532679.5_1_11:65653270-65655931:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2547302246094	3	495.608882	1483.80482	0.19739	9.783E-05	-0.30649	-0.0001519	-0.1091	-5.4071E-05	495.6086852617169	33.404	0.77583	33.47	33.132	33.907	0.0667					78	27	4	0	0	0	0.30239	1	6501	6501		30.414	18.782	1	906990			39824	6641	23127	23128	48454	48454					0.08226621774042542
RQFLLIFIQ	9	Unmodified	_RQFLLIFIQ_					0	0	0			REV__nc|ENSG00000124207|P55060-4|CSE1L	REV__nc|ENSG00000124207|P55060-4|CSE1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3431396484375	2	589.358234	1176.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.968	1	94.968	94.468	95.468	0								0	0	0	0.264	1	25345	25345		1.8442	0	1		+		39825	15221	23128	23129	48455	48455					0.12063161053424665
RQFNCSPHPY	10	Unmodified	_RQFNCSPHPY_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB;ENST00000495897.2_1_10:75227245-75231333:-|nuORF;nc|ENSG00000138814|Q08209-4|PPP3CA;nc|ENSG00000120910|P48454-2|PPP3CC;ENSG00000120910|ENST00000240139|PPP3CC;nc|ENSG00000120910|P48454-3|PPP3CC;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA	nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.8095703125	2	624.782564	1247.55058	0.12484	7.7996E-05	1.1388	0.00071152	1.2637	0.00078951	624.7859579922341	69.112	0.21954	69.183	69.044	69.264	0.071938					10	7	2	0	0	0	0.31958	1	17430	17430		5.2969	1.7004	1	50383			39826	2144;4199	23129	23130	48456	48456					-0.06329768316732043
RQFWTRTKK	9	Unmodified	_RQFWTRTKK_					0	0	0		ENSG00000162910|ENST00000336520|MRPL55;nc|ENSG00000162910|Q7Z7F7-2|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.5751953125	3	417.575401	1249.70437	-0.21566	-9.0056E-05	-0.095832	-4.0017E-05	-0.3115	-0.00013007	417.57534437737854	15.998	0.67069	15.998	15.734	16.405	0					40	23	2	0	0	0	0.19083	1	1188	1188		24.991	10.773	1	346500			39827	5629	23130	23131	48457	48457					0.08951009511065422
RQFWTRTKK	9	Unmodified	_RQFWTRTKK_					0	0	0		ENSG00000162910|ENST00000336520|MRPL55;nc|ENSG00000162910|Q7Z7F7-2|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.5752258300781	3	417.575401	1249.70437	-0.030866	-1.2889E-05	0.032751	1.3676E-05	0.0018848	7.8705E-07	417.5752625991467	16.105	1.2093	15.991	15.486	16.695	-0.11434					91	41	3	0	0	0	0.25527	1	1239	1239		9.544	8.0889	1	335470			39828	5629	23130	23131	48458	48458					0.08951009511065422
RQFWTRTKK	9	Unmodified	_RQFWTRTKK_					0	0	0		ENSG00000162910|ENST00000336520|MRPL55;nc|ENSG00000162910|Q7Z7F7-2|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	ENSG00000162910|ENST00000336520|MRPL55	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.5752258300781	3	417.575401	1249.70437	0.011731	4.8987E-06	-0.2235	-9.3327E-05	-0.21177	-8.8428E-05	417.575239056541	16.042	0.98271	15.98	15.575	16.558	-0.062533					66	33	3	0	0	0	0.23612	1	1202	1202		18.373	8.0579	1	412290			39829	5629	23130	23131	48459	48459					0.08951009511065422
RQHQRNVKL	9	Unmodified	_RQHQRNVKL_					0	0	0		ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	ENSG00000023330|ENST00000484952|ALAS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8460693359375	2	589.846887	1177.67922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.39	1	114.37	113.87	114.87	-0.019096								0	0	0	0.2672	1	29705	29705		0.52476	0	1				39830	523	23131	23132	48460	48460					0.09748954708516067
RQHRNRRRMRR	11	Unmodified	_RQHRNRRRMRR_					0	0	0			REV__ENST00000541683.1_1_11:61582434-61582803:-|nuORF	REV__ENST00000541683.1_1_11:61582434-61582803:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.78515625	4	406.237087	1620.91924	-0.22724	-9.2311E-05	-0.82874	-0.00033666	-1.056	-0.00042898	406.2359189988825	26.223	0.39146	26.185	26.01	26.402	-0.038671					22	13	2	0	0	0	0.33352	1	4336	4336		0.08335	0	1	44274	+		39831	22130	23132	23133	48461	48461					0.1336204582771643
RQHTGGVWGM	10	Unmodified	_RQHTGGVWGM_					0	0	0			REV__ENSG00000153531|ENST00000612156|ADPRHL1	REV__ENSG00000153531|ENST00000612156|ADPRHL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.7703857421875	2	564.772	1127.52945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.297	1	26.275	25.775	26.775	-0.022238								0	0	0	0.38166	1	4309	4309		1.4819	0	1		+		39832	16628	23133	23134	48462	48462					-0.029217336256124327
RQHVLAEKF	9	Unmodified	_RQHVLAEKF_					0	0	0			REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.2902221679688	2	564.31964	1126.62473	0.36351	0.00020514	-2.3295	-0.0013146	-1.966	-0.0011094	564.317981346402	45.185	0.59167	45.185	44.909	45.501	0					32	21	3	0	0	0	0.22061	1	10053	10053		24.021	13.947	1	157150	+		39833	14014	23134	23135	48463	48463					0.06647942837071241
RQHVLAEKF	9	Unmodified	_RQHVLAEKF_					0	0	0			REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.2902221679688	2	564.31964	1126.62473	0.52855	0.00029827	-2.0397	-0.001151	-1.5111	-0.00085275	564.3183262344347	45.037	0.6225	45.106	44.952	45.574	0.068569					29	21	2	0	0	0	0.24289	1	10004	10004		18.146	6.5061	1	192320	+		39834	14014	23134	23135	48464	48464					0.06647942837071241
RQIEQREWE	9	Unmodified	_RQIEQREWE_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.3202514648438	2	637.317825	1272.6211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.684	1	93.684	93.184	94.184	0								0	0	0	0.264	1	24960	24960		1.8442	0	1		+		39835	18449	23135	23136	48465	48465					-0.004307717274286915
RQIERVRM	8	Unmodified	_RQIERVRM_					0	0	0			REV__ENST00000391998.3_1_19:53982847-53982895:+|nuORF	REV__ENST00000391998.3_1_19:53982847-53982895:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3114013671875	2	544.311292	1086.60803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.43	1	116.4	115.9	116.9	-0.022781								0	0	0	0.37724	1	30162	30162		2.3027	0	1		+		39836	20587	23136	23137	48466	48466					0.06819118679482017
RQILLLPFPI	10	Unmodified	_RQILLLPFPI_					0	0	0		ENST00000378962.3_1_X:30578303-30578414:-|nuORF	ENST00000378962.3_1_X:30578303-30578414:-|nuORF	ENST00000378962.3_1_X:30578303-30578414:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.1833190917969	3	403.928781	1208.76451	0.091656	3.7023E-05	-0.17899	-7.2298E-05	-0.08733	-3.5275E-05	403.9286208846435	45.012	1.2239	45.012	44.581	45.805	0					61	44	2	0	0	0	0.32068	1	10075	10075		1.7423	1.4733	1	149650			39837	9964	23137	23138	48467	48467					0.1684830712160874
RQILLLPFPI	10	Unmodified	_RQILLLPFPI_					0	0	0		ENST00000378962.3_1_X:30578303-30578414:-|nuORF	ENST00000378962.3_1_X:30578303-30578414:-|nuORF	ENST00000378962.3_1_X:30578303-30578414:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.1832580566406	3	403.928781	1208.76451	-0.068225	-2.7558E-05	-0.47763	-0.00019293	-0.54585	-0.00022048	403.92858044309367	44.939	0.77281	45.007	44.711	45.484	0.068569					38	27	2	0	0	0	0.32068	1	9975	9975		3.5871	3.5871	1	197920			39838	9964	23137	23138	48468	48468					0.1684830712160874
RQIPYTMMK	9	2 Oxidation (M)	_RQIPYTM(Oxidation (M))M(Oxidation (M))K_		RQIPYTM(1)M(1)K		RQIPYTM(63)M(63)K	0	0	2		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.2991333007812	2	600.299201	1198.58385	0.52557	0.0003155	-1.1384	-0.00068336	-0.6128	-0.00036786	600.2988141918323	21.448	1.3664	21.448	20.709	22.076	0					129	48	5	0	0	0	0.023171	2	2826	2826;2870		62.869	45.756	1	1380800			39839	1046	23138	23139	48469;48470	48469		126;127			-0.007499025890410849
RQIPYTMMK	9	2 Oxidation (M)	_RQIPYTM(Oxidation (M))M(Oxidation (M))K_		RQIPYTM(1)M(1)K		RQIPYTM(50)M(50)K	0	0	2		ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF	ENSG00000075415|ENST00000552981|SLC25A3	ENSG00000075415|ENST00000552981|SLC25A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.2991333007812	2	600.299201	1198.58385	0.39836	0.00023913	-0.97477	-0.00058515	-0.57641	-0.00034602	600.2989190468182	21.484	1.5088	21.435	20.753	22.262	-0.049377					134	53	5	0	0	0	0.059067	2	2859	2807;2859		49.527	36.485	1	1487900			39840	1046	23138	23139	48471;48472	48472		126;127			-0.007499025890410849
RQIRHKRCI	9	Unmodified	_RQIRHKRCI_					0	0	0			REV__ENSG00000115084|ENST00000245680|SLC35F5;REV__ENST00000469702.5_1_2:114462911-114480749:-|nuORF	REV__ENST00000469702.5_1_2:114462911-114480749:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.23187255859375	3	403.908497	1208.70366	0.085394	3.4491E-05	-2.8826	-0.0011643	-2.7972	-0.0011298	403.9073324930687	29.573	0.16767	29.573	29.492	29.659	0					6	5	2	0	0	0	0.259	1	5329	5329		5.2969	3.5546	1	17959	+		39841	21344;14860	23139	23140	48473	48473					0.10765891590381216
RQKEYAKMQRA	11	Unmodified	_RQKEYAKMQRA_					0	0	0			REV__ENSG00000142546|ENST00000596358|NOSIP	REV__ENSG00000142546|ENST00000596358|NOSIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.76898193359375	3	470.25411	1407.7405	-0.2407	-0.00011319	-0.89058	-0.0004188	-1.1313	-0.00053199	470.2537298365691	14.572	0.61403	14.572	14.335	14.949	0					37	21	3	0	0	0	0.33334	1	831	831		1.2148	0.10508	1	70707	+		39842	16124	23140	23141	48474	48474					0.052940986256317046
RQKQEVAK	8	Unmodified	_RQKQEVAK_					0	0	0			REV__ENST00000472891.1_1_10:89280873-89306330:+|nuORF	REV__ENST00000472891.1_1_10:89280873-89306330:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7903137207031	2	493.790715	985.566878	0.039274	1.9393E-05	-0.36567	-0.00018056	-0.32639	-0.00016117	493.7903700548443	12.545	0.33708	12.545	12.332	12.669	0					19	10	3	0	0	0	0.4396	1	160	160		9.3831	1.2276	1	87968	+		39843	14564	23141	23142	48475	48475					0.07351680911665426
RQKQKITRKS	10	Unmodified	_RQKQKITRKS_					0	0	0			REV__ENST00000533085.2_1_12:89894792-89896268:+|nuORF	REV__ENST00000533085.2_1_12:89894792-89896268:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.2156982421875	3	424.933477	1271.7786	0.2092	8.8895E-05	-1.137	-0.00048316	-0.92782	-0.00039426	424.93290534726856	84.004	0.65967	84.004	83.504	84.163	0					39	25	2	0	0	0	0.32174	1	21965	21965		0.15932	0	1	540140	+		39844	22041	23142	23143	48476	48476					0.1535835260258409
RQKRERRAR	9	Unmodified	_RQKRERRAR_					0	0	0		ENST00000305737.6_2_4:106067162-106067222:+|nuORF	ENST00000305737.6_2_4:106067162-106067222:+|nuORF	ENST00000305737.6_2_4:106067162-106067222:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.3831176757812	2	628.38196	1254.74937	0.26891	0.00016898	0.6707	0.00042146	0.93961	0.00059044	628.3830313255794	97.575	1.3666	97.568	96.734	98.1	-0.0068207					380	142	3	0	0	0	0.26168	1	26118	26118		1.8442	0.36234	1	448970			39845	9267	23143	23144	48477	48477					0.13218253096965782
RQKRRRRKHK	10	Unmodified	_RQKRRRRKHK_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.6468811035156	3	483.646776	1447.9185	0.20877	0.00010097	0.14854	7.1843E-05	0.35731	0.00017281	483.6468077678423	43.174	3.3203	43.174	42.624	45.945	0					316	121	5	0	0	0	0.4155	2	9491	9491;9540		0.62683	0.48693	1	11387000	+		39846	14552	23144	23145	48478;48479	48478					0.21245574450313143
RQKRRRRKHK	10	Unmodified	_RQKRRRRKHK_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.64697265625	3	483.646776	1447.9185	0.29651	0.00014341	0.031562	1.5265E-05	0.32807	0.00015867	483.64675649552896	42.902	3.6159	42.988	42.618	46.234	0.085201					304	131	5	0	0	0	0.4155	2	9376	9376;9425		0.62683	0.48693	1	11311000	+		39847	14552	23144	23145	48480;48481	48480					0.21245574450313143
RQKRRRRKHK	10	Unmodified	_RQKRRRRKHK_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.80853271484375	3	483.646776	1447.9185	0.38636	0.00018686	-0.63874	-0.00030893	-0.25239	-0.00012207	483.6464036465435	47.474	0.61531	47.522	47.188	47.804	0.04842					36	22	2	0	0	0	0.32167	1	10751	10751		0.62683	0	1	278650	+		39848	14552	23144	23145	48482	48482					0.21245574450313143
RQKRRRRKHK	10	Unmodified	_RQKRRRRKHK_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2341613769531	3	483.646776	1447.9185	0.29651	0.00014341	0.031562	1.5265E-05	0.32807	0.00015867	483.64675649552896	42.902	3.6159	42.988	42.618	46.234	0.085201					304	131	5	0	0	0	0.32167	1	9846	9846		0.62683	0	1	11311000	+		39849	14552	23144	23145	48483	48483					0.21245574450313143
RQKRRRRKHK	10	Unmodified	_RQKRRRRKHK_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.6470642089844	3	483.646776	1447.9185	0.16822	8.1357E-05	0.18319	8.8599E-05	0.35141	0.00016996	483.64683283062817	42.857	2.963	42.949	42.607	45.571	0.091362					343	109	5	0	0	0	0.41512	2	9394	9394;9449		0.69767	0.55777	1	11087000	+		39850	14552	23144	23145	48484;48485	48484					0.21245574450313143
RQKRRRRKHK	10	Unmodified	_RQKRRRRKHK_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	483.646776	1447.9185	0.20877	0.00010097	0.14854	7.1843E-05	0.35731	0.00017281	483.6468077678423	43.174	3.3203	43.174	42.624	45.945	0	0.1376	4.6743E-05	NaN	0.69767	316	121	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11387000	+		39851	14552	23144	23145							0.21245574450313143
RQKRRRRKHK	10	Unmodified	_RQKRRRRKHK_					0	0	0			REV__nc|ENSG00000107404|O14640-2|DVL1	REV__nc|ENSG00000107404|O14640-2|DVL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	483.646776	1447.9185	0.16822	8.1357E-05	0.18319	8.8599E-05	0.35141	0.00016996	483.64683283062817	42.857	2.963	42.949	42.607	45.571	0.091362	-0.088291	9.7013E-05	NaN	0.69767	343	109	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11087000	+		39852	14552	23144	23145							0.21245574450313143
RQLAEEDL	8	Unmodified	_RQLAEEDL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7799072265625	2	487.251089	972.487624	0.2256	0.00010992	-0.46833	-0.00022819	-0.24273	-0.00011827	487.25091232439746	16.944	0.59813	16.944	16.72	17.318	0					37	20	2	0	0	0	0.34414	1	1572	1572		2.0598	0	1	142320			39853	12859	23145	23146	48486	48486					0.0002798916684696451
RQLDTVNFFLK	11	Unmodified	_RQLDTVNFFLK_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.92596435546875	3	460.925988	1379.75613	0.58822	0.00027113	-0.5952	-0.00027434	-0.006973	-3.214E-06	460.9256932879293	56.173	0.29371	56.173	56.13	56.423	0					19	10	2	0	0	0	0.0079184	1	13483	13483		74.077	65.325	1	661690			39854	1868	23146	23147	48487	48487					0.08144708414329216
RQLDTVNFFLK	11	Unmodified	_RQLDTVNFFLK_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	460.925988	1379.75613	0.63585	0.00029308	-0.39458	-0.00018187	0.24128	0.00011121	460.9257952273472	56.119	0.36827	56.19	56.109	56.477	0.070885	-0.057828	0.00021048	NaN	74.077	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	597840			39855	1868	23146	23147							0.08144708414329216
RQLDTVNFFLK	11	Unmodified	_RQLDTVNFFLK_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	460.925988	1379.75613	0.83864	0.00038655	-0.48049	-0.00022147	0.35814	0.00016508	461.2600835515937	56.401	0.32911	56.381	56.239	56.568	-0.019077	0.13338	9.1683E-05	NaN	74.077	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	582400			39856	1868	23146	23147							0.08144708414329216
RQLEMILNK	9	Oxidation (M)	_RQLEM(Oxidation (M))ILNK_		RQLEM(1)ILNK		RQLEM(44)ILNK	0	0	1		ENSG00000187134|ENST00000380872|AKR1C1;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENSG00000196139|ENST00000380554|AKR1C3;ENST00000605322.1_1_10:5136636-5141836:+|nuORF;nc|ENSG00000196139|P42330-2|AKR1C3;ENSG00000198610|ENST00000263126|AKR1C4	ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000196139|ENST00000380554|AKR1C3	ENSG00000187134|ENST00000380872|AKR1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8244018554688	2	580.82644	1159.63833	-0.0084148	-4.8875E-06	-0.9473	-0.00055022	-0.95571	-0.0005551	580.8258022562818	30.118	0.46056	30.146	29.987	30.448	0.027157					29	15	3	0	0	0	0.073988	1	5468	5468		43.982	17.714	1	296150			39857	7666;7826	23147	23148	48488	48488		844			0.0648943255400809
RQLFFEKR	8	Unmodified	_RQLFFEKR_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.32275390625	2	562.322183	1122.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.62	1	112.63	112.13	113.13	0.0131								0	0	0	0.38004	1	29307	29307		0.69038	0	1		+		39858	18049	23148	23149	48489	48489					0.07340246699709496
RQLGHPLL	8	Unmodified	_RQLGHPLL_					0	0	0			REV__ENST00000566347.5_1_15:68503645-68506709:-|nuORF	REV__ENST00000566347.5_1_15:68503645-68506709:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.27679443359375	2	467.285069	932.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.326	1	95.409	94.909	95.909	0.082779								0	0	0	0.36961	1	25459	25459		5.7604	0	1		+		39859	22368	23149	23150	48490	48490					0.08660903608188164
RQLPAVHPIFK	11	Unmodified	_RQLPAVHPIFK_					0	0	0		nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;ENST00000475300.1_1_10:45935943-45936950:+|nuORF	nc|ENSG00000012779|P09917-5|ALOX5	nc|ENSG00000012779|P09917-5|ALOX5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.9309387207031	3	435.931185	1304.77173	0.29979	0.00013069	-0.72123	-0.00031441	-0.42144	-0.00018372	435.9306991577819	37.198	1.2881	37.198	36.479	37.767	0					109	45	5	0	0	0	0.24753	1	7670	7670		33.632	27.009	1	1501500			39860	454	23150	23151	48491	48491					0.13153039722010362
RQLPAVHPIFK	11	Unmodified	_RQLPAVHPIFK_					0	0	0		nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;ENST00000475300.1_1_10:45935943-45936950:+|nuORF	nc|ENSG00000012779|P09917-5|ALOX5	nc|ENSG00000012779|P09917-5|ALOX5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	435.931185	1304.77173	0.092529	4.0336E-05	-0.54073	-0.00023572	-0.4482	-0.00019538	435.9308070743	37.066	1.3057	37.153	36.435	37.741	0.08741	-0.011696	0.00014299	NaN	33.632	108	47	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1165600			39861	454	23150	23151							0.13153039722010362
RQLPAVHPIFK	11	Unmodified	_RQLPAVHPIFK_					0	0	0		nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5;nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;ENST00000475300.1_1_10:45935943-45936950:+|nuORF	nc|ENSG00000012779|P09917-5|ALOX5	nc|ENSG00000012779|P09917-5|ALOX5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	435.931185	1304.77173	0.22185	9.6711E-05	-0.68132	-0.00029701	-0.45947	-0.0002003	435.9307321428075	37.051	1.2774	37.144	36.458	37.735	0.093018	-0.021105	-4.0877E-05	NaN	33.632	119	46	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1260700			39862	454	23150	23151							0.13153039722010362
RQMLMEAF	8	Unmodified	_RQMLMEAF_					0	0	0			REV__ENST00000529654.5_1_8:145616841-145618286:+|nuORF	REV__ENST00000529654.5_1_8:145616841-145618286:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.784423828125	2	513.24898	1024.48341	0.34271	0.0001759	0.14074	7.2233E-05	0.48345	0.00024813	513.7504792672178	79.477	0.12895	79.538	79.465	79.594	0.061417					5	4	2	0	0	0	0.34185	1	20596	20596		10.183	0.83596	1	43669	+		39863	17761	23151	23152	48492	48492					-0.027855148520529838
RQMPLALIGS	10	Unmodified	_RQMPLALIGS_					0	0	0			REV__ENST00000317025.12_1_8:38187341-38189007:-|nuORF	REV__ENST00000317025.12_1_8:38187341-38189007:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.8111572265625	2	543.310426	1084.6063	0.40014	0.0002174	-4.2809	-0.0023259	-3.8808	-0.0021085	543.8100180754208	26.871	0.73864	26.871	26.499	27.237	0					68	25	4	0	0	0	0.38515	1	4518	4518		6.2058	0.47393	1	258690	+		39864	19938	23152	23153	48493	48493					0.06738064870864946
RQMRRRLT	8	Unmodified	_RQMRRRLT_					0	0	0		ENST00000520394.5_2_5:167645349-167645409:+|nuORF	ENST00000520394.5_2_5:167645349-167645409:+|nuORF	ENST00000520394.5_2_5:167645349-167645409:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.80419921875	2	558.830183	1115.64581	0.21064	0.00011771	1.8554	0.0010368	2.066	0.0011545	558.8312576917867	16.689	0.25795	16.689	16.491	16.749	0					14	8	2	0	0	0	0.34408	1	1344	1344		2.3027	0	1	58161			39865	11475	23153	23154	48494	48494					0.09261629664956672
RQMVLQEE	8	Unmodified	_RQMVLQEE_					0	0	0		ENST00000502850.5_1_4:77053774-77066720:-|nuORF	ENST00000502850.5_1_4:77053774-77066720:-|nuORF	ENST00000502850.5_1_4:77053774-77066720:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2957763671875	2	516.760766	1031.50698	-0.054654	-2.8243E-05	0.23268	0.00012024	0.17802	9.1996E-05	516.760711799595	13.198	0.17584	13.099	12.953	13.129	-0.099291					8	5	2	0	0	0	0.34437	1	340	340		0.69038	0	1	10904			39866	11282	23154	23155	48495	48495					-0.007513778138672933
RQNEINNPK	9	Unmodified	_RQNEINNPK_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7940063476562	2	556.793986	1111.57342	-0.030177	-1.6803E-05	1.9243	0.0010714	1.8941	0.0010546	556.7946127979285	13.101	0.58086	13.101	12.815	13.396	0					42	20	3	0	0	0	0.28225	1	332	332		11.495	1.4208	1	59709			39867	1512	23155	23156	48496	48496					0.022095740723671042
RQNEINNPK	9	Unmodified	_RQNEINNPK_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7938232421875	2	556.793986	1111.57342	-0.012508	-6.9641E-06	1.2762	0.00071059	1.2637	0.00070362	556.7943681083644	13.188	0.46502	13.089	12.841	13.306	-0.099291					37	15	3	0	0	0	0.28225	1	356	356		11.495	1.4208	1	70135			39868	1512	23155	23156	48497	48497					0.022095740723671042
RQNEINNPK	9	Unmodified	_RQNEINNPK_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7935791015625	2	556.793986	1111.57342	-0.15138	-8.4289E-05	1.1002	0.00061261	0.94886	0.00052832	556.7943727450544	13.16	0.45457	13.092	12.905	13.359	-0.067496					35	15	3	0	0	0	0.30064	1	336	336		8.7454	2.5396	1	62972			39869	1512	23155	23156	48498	48498					0.022095740723671042
RQNGLKMV	8	Unmodified	_RQNGLKMV_					0	0	0		ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.759765625	2	473.268561	944.52257	0.07525	3.5613E-05	-0.21407	-0.00010131	-0.13882	-6.5698E-05	473.268403173626	19.152	0.85626	19.096	18.848	19.705	-0.055693					54	29	2	0	0	0	0.45169	1	2283	2283		5.2307	0	1	794430			39870	2534	23156	23157	48499	48499					0.04808953493829904
RQNLRKYFF	9	Unmodified	_RQNLRKYFF_					0	0	0			REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.9200439453125	3	424.571768	1270.69348	0.15196	6.4517E-05	-0.40206	-0.00017071	-0.25011	-0.00010619	424.5716472145504	45.462	0.3975	45.521	45.336	45.734	0.059834					21	13	2	0	0	0	0.25527	1	10111	10111		8.7454	0	1	121520	+		39871	14784	23157	23158	48500	48500					0.06895607136789295
RQNPSDVMV	9	Unmodified	_RQNPSDVMV_					0	0	0		ROBO1|p.H1098Tfs*33|1|0.04|ENSG00000169855|chr3:78635854-78635855|-/T|frameshift_variant;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1	ROBO1|p.H1098Tfs*33|1|0.04|ENSG00000169855|chr3:78635854-78635855|-/T|frameshift_variant	ROBO1|p.H1098Tfs*33|1|0.04|ENSG00000169855|chr3:78635854-78635855|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2694091796875	2	523.258391	1044.50223	0.48263	0.00025254	0.42938	0.00022468	0.91201	0.00047722	523.2586298126422	43.634	1.7014	43.711	43.401	45.102	0.077515					136	62	4	0	0	0	0.25314	1	9936	9936		15.847	15.847	1	5472200			39872	6392	23158	23159	48501	48501					-0.01824261956630835
RQPKAEQLRL	10	Unmodified	_RQPKAEQLRL_					0	0	0			REV__ENSG00000179698|ENST00000323662|WDR97	REV__ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8695678710938	2	619.870028	1237.7255	0.29926	0.0001855	-0.83596	-0.00051819	-0.5367	-0.00033269	619.8692725486243	90.707	0.81126	90.707	90.123	90.934	0					111	64	3	0	0	0	0.40106	1	24026	24026		3.2813	0	1	284010	+		39873	18088	23159	23160	48502	48502					0.11614974819917734
RQPKAEQLRL	10	Unmodified	_RQPKAEQLRL_					0	0	0			REV__ENSG00000179698|ENST00000323662|WDR97	REV__ENSG00000179698|ENST00000323662|WDR97	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8694458007812	2	619.870028	1237.7255	-0.057748	-3.5796E-05	-0.26006	-0.0001612	-0.31781	-0.000197	619.8694425647374	97.597	0.96609	97.597	97.024	97.991	0					189	100	3	0	0	0	0.41673	1	26190	26190		0.40072	0	1	195890	+		39874	18088	23159	23160	48503	48503					0.11614974819917734
RQPPISASRPQ	11	Unmodified	_RQPPISASRPQ_					0	0	0		ENST00000493892.5_1_1:26308955-26317251:-|nuORF	ENST00000493892.5_1_1:26308955-26317251:-|nuORF	ENST00000493892.5_1_1:26308955-26317251:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.29766845703125	3	412.898432	1235.67347	-0.092295	-3.8108E-05	0.51132	0.00021112	0.41903	0.00017302	412.898631472244	30.915	0.56512	30.915	30.553	31.118	0					30	19	2	0	0	0	0.3331	1	5710	5710		1.0136	1.0136	1	129050			39875	11206	23160	23161	48504	48504					0.06505811406191242
RQPPISASRPQ	11	Unmodified	_RQPPISASRPQ_					0	0	0		ENST00000493892.5_1_1:26308955-26317251:-|nuORF	ENST00000493892.5_1_1:26308955-26317251:-|nuORF	ENST00000493892.5_1_1:26308955-26317251:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	412.898432	1235.67347	0.13306	5.4941E-05	1.1927	0.00049247	1.3258	0.00054742	412.89851197779683	30.818	0.56187	30.846	30.58	31.142	0.027946	-0.013281	0.00063293	NaN	1.0136	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99006			39876	11206	23160	23161							0.06505811406191242
RQPPISASRPQ	11	Unmodified	_RQPPISASRPQ_					0	0	0		ENST00000493892.5_1_1:26308955-26317251:-|nuORF	ENST00000493892.5_1_1:26308955-26317251:-|nuORF	ENST00000493892.5_1_1:26308955-26317251:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	412.898432	1235.67347	0.029957	1.2369E-05	0.47745	0.00019714	0.50741	0.00020951	412.89865945047865	30.79	0.39049	30.817	30.638	31.029	0.027159	-0.042231	-0.00025308	NaN	1.0136	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110450			39877	11206	23160	23161							0.06505811406191242
RQQEDVVML	9	Unmodified	_RQQEDVVML_					0	0	0			REV__nc|ENSG00000168386|Q4L180-2|FILIP1L	REV__nc|ENSG00000168386|Q4L180-2|FILIP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.286865234375	2	559.287148	1116.55974	-0.019807	-1.1078E-05	-0.63048	-0.00035262	-0.65028	-0.0003637	559.2867150903807	14.078	0.46267	14.078	13.932	14.395	0					27	15	2	0	0	0	0.259	1	621	621		5.2969	1.1074	1	173730	+		39878	17455	23161	23162	48505	48505					0.0061258024893504626
RQQKRKRNRIY	11	Unmodified	_RQQKRKRNRIY_					0	0	0			REV__chr1:100735634-100738123|234|60.64|0.43|7.13|+|1|None,VCAM1|2	REV__chr1:100735634-100738123|234|60.64|0.43|7.13|+|1|None,VCAM1|2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.9780883789062	3	515.97808	1544.91241	0.047026	2.4264E-05	1.0295	0.0005312	1.0765	0.00055546	516.3134854112086	101.29	0.85211	101.32	100.9	101.75	0.027214					252	114	3	0	0	0	0.48212	1	27006	27006		0.45452	0	1	341570	+		39879	13154	23162	23163	48506	48506					0.16175011428185826
RQQPPLRRGA	10	Unmodified	_RQQPPLRRGA_					0	0	0			REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8447875976562	2	589.846887	1177.67922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.58	1	100.58	100.08	101.08	0								0	0	0	0.3629	1	26870	26870		9.3831	0	1		+		39880	20291	23163	23164	48507	48507					0.09748954708516067
RQQVMHELKKL	11	Unmodified	_RQQVMHELKKL_					0	0	0			REV__nc|nan|Q96M02-2|C10orf90	REV__nc|nan|Q96M02-2|C10orf90	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.6063537597656	3	470.606373	1408.79729	0.32694	0.00015386	0.46964	0.00022102	0.79658	0.00037487	470.6064335415316	51.02	1.185	51.02	50.544	51.729	0					128	43	4	0	0	0	0.47545	1	11885	11885		1.3296	0.11481	1	1284900	+		39881	16669	23164	23165	48508	48508					0.10924146182128425
RQQVMHELKKL	11	Unmodified	_RQQVMHELKKL_					0	0	0			REV__nc|nan|Q96M02-2|C10orf90	REV__nc|nan|Q96M02-2|C10orf90	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.6065368652344	3	470.606373	1408.79729	0.28331	0.00013333	0.4554	0.00021431	0.73871	0.00034764	470.606425423652	51.039	1.2122	51.086	50.63	51.842	0.046574					112	44	4	0	0	0	0.47545	1	11885	11885		1.3296	0.11481	1	1183200	+		39882	16669	23164	23165	48509	48509					0.10924146182128425
RQRALSSL	8	Unmodified	_RQRALSSL_					0	0	0			REV__LAD1|p.M354Nfs*77|1|0.32|ENSG00000159166|chr1:201385771-201385772|-/T|frameshift_variant	REV__LAD1|p.M354Nfs*77|1|0.32|ENSG00000159166|chr1:201385771-201385772|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.777587890625	2	465.777608	929.540663	-0.017051	-7.942E-06	0.04675	2.1775E-05	0.029699	1.3833E-05	465.7775281831673	73.055	2.0365	73.055	72.667	74.703	0					190	71	4	0	0	0	0.44389	1	18553	18553		7.9102	0	1	1962000	+		39883	16839	23165	23166	48510	48510					0.07307411740191583
RQRETPSPP	9	Unmodified	_RQRETPSPP_					0	0	0		ENST00000563591.5_1_16:28857957-28875007:+|nuORF	ENST00000563591.5_1_16:28857957-28875007:+|nuORF	ENST00000563591.5_1_16:28857957-28875007:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.283447265625	2	534.283254	1066.55196	0.091736	4.9013E-05	0.31892	0.00017039	0.41066	0.00021941	534.2828701897614	99.117	1.7874	99.117	98.405	100.19	0					553	222	3	0	0	0	0.30623	2	26502	26502;26591		7.9102	1.187	1	846820			39884	11931	23166	23167	48511;48512	48511					0.021341890436588073
RQRETPSPP	9	Unmodified	_RQRETPSPP_					0	0	0		ENST00000563591.5_1_16:28857957-28875007:+|nuORF	ENST00000563591.5_1_16:28857957-28875007:+|nuORF	ENST00000563591.5_1_16:28857957-28875007:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.283447265625	2	534.283254	1066.55196	0.11822	6.3161E-05	0.26094	0.00013941	0.37915	0.00020258	534.2828086271509	98.95	1.6655	99.001	98.473	100.14	0.050888					522	217	3	0	0	0	0.30623	2	26451	26451;26481		7.9102	1.187	1	1120300			39885	11931	23166	23167	48513;48514	48513					0.021341890436588073
RQRETPSPP	9	Unmodified	_RQRETPSPP_					0	0	0		ENST00000563591.5_1_16:28857957-28875007:+|nuORF	ENST00000563591.5_1_16:28857957-28875007:+|nuORF	ENST00000563591.5_1_16:28857957-28875007:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2825317382812	2	534.283254	1066.55196	0.4155	0.00022199	-0.36498	-0.000195	0.050513	2.6988E-05	534.2824463840578	99.044	1.6295	99.037	98.573	100.2	-0.0069046					454	208	3	0	0	0	0.30623	3	26488	26488;26520;26551		7.9102	1.187	1	948530			39886	11931	23166	23167	48515;48516;48517	48515					0.021341890436588073
RQRGRLRA	8	Unmodified	_RQRGRLRA_					0	0	0			REV__ENST00000374268.4_1_1:26488243-26488855:+|nuORF	REV__ENST00000374268.4_1_1:26488243-26488855:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7590026855469	2	506.81539	1011.61623	0.15633	7.9231E-05	2.9037	0.0014716	3.06	0.0015509	506.81664001442323	28.989	0.37697	29.003	28.789	29.166	0.013474					26	13	3	0	0	0	0.34247	1	5145	5145		4.756	0	1	122790	+		39887	20458	23167	23168	48518	48518					0.1108843371112016
RQRKHSMLQE	10	Unmodified	_RQRKHSMLQE_					0	0	0		ENSG00000163362|ENST00000413687|INAVA;nc|ENSG00000163362|Q3KP66|INAVA	ENSG00000163362|ENST00000413687|INAVA	ENSG00000163362|ENST00000413687|INAVA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2465515136719	3	438.234939	1311.68299	0.16778	7.3526E-05	-1.9022	-0.00083359	-1.7344	-0.00076007	438.23470300648887	20.862	0.79813	20.862	20.57	21.368	0					52	27	3	0	0	0	0.3994	1	2803	2803		3.5871	0.5148	1	77814			39888	5670	23168	23169	48519	48519					0.039612564200751876
RQRKLEEER	9	Unmodified	_RQRKLEEER_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3475952148438	2	622.346917	1242.67928	0.49695	0.00030928	0.38137	0.00023734	0.87832	0.00054662	622.3470765266429	85.83	2.7365	85.83	84.994	87.731	0					216	110	3	0	0	0	0.31417	2	22475	22475;22574		6.7232	0	1	1062300	+		39889	23042	23169	23170	48520;48521	48520					0.06764909917865225
RQRKLEEER	9	Unmodified	_RQRKLEEER_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3470458984375	2	622.346917	1242.67928	0.19645	0.00012226	0.66446	0.00041352	0.86091	0.00053578	622.3471316749807	85.769	2.5488	85.854	85.024	87.573	0.084251					256	102	3	0	0	0	0.31417	2	22485	22485;22530		6.7232	0	1	1032600	+		39890	23042	23169	23170	48522;48523	48522					0.06764909917865225
RQRKLEEER	9	Unmodified	_RQRKLEEER_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3469848632812	2	622.346917	1242.67928	0.37438	0.000233	0.4153	0.00025846	0.78968	0.00049145	622.347035965394	85.773	3.0068	85.764	84.921	87.928	-0.0090103					276	128	4	0	0	0	0.31417	1	22536	22536		6.7232	2.1943	1	1118300	+		39891	23042	23169	23170	48524	48524					0.06764909917865225
RQRKSWYGFSF	11	Unmodified	_RQRKSWYGFSF_					0	0	0			REV__CCDC174|p.S380Rfs*75|1|0.22|ENSG00000154781|chr3:14670927-14670942|GTCAGATCTCCGGGCT/-|frameshift_variant	REV__CCDC174|p.S380Rfs*75|1|0.22|ENSG00000154781|chr3:14670927-14670942|GTCAGATCTCCGGGCT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.91741943359375	3	487.917716	1460.73132	0.30243	0.00014756	-1.1537	-0.0005629	-0.85124	-0.00041534	487.9172122221272	57.304	0.44054	57.39	57.104	57.544	0.085621					41	15	4	0	0	0	0.39698	1	13821	13821		11.631	5.397	1	967280	+		39892	13141	23170	23171	48525	48525					0.01938073331598389
RQRKSWYGFSF	11	Unmodified	_RQRKSWYGFSF_					0	0	0			REV__CCDC174|p.S380Rfs*75|1|0.22|ENSG00000154781|chr3:14670927-14670942|GTCAGATCTCCGGGCT/-|frameshift_variant	REV__CCDC174|p.S380Rfs*75|1|0.22|ENSG00000154781|chr3:14670927-14670942|GTCAGATCTCCGGGCT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.9173278808594	3	487.917716	1460.73132	0.18273	8.9158E-05	-0.98689	-0.00048152	-0.80416	-0.00039236	487.9173268696674	57.681	0.69532	57.663	57.337	58.033	-0.0172					51	25	3	0	0	0	0.39698	1	13929	13929		11.631	7.5147	1	1324500	+		39893	13141	23170	23171	48526	48526					0.01938073331598389
RQRKVKHKDVL	11	Unmodified	_RQRKVKHKDVL_					0	0	0			REV__nc|ENSG00000175029|P56545|CTBP2	REV__nc|ENSG00000175029|P56545|CTBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.9593200683594	3	469.628276	1405.863	0.12704	5.9661E-05	-0.70766	-0.00033234	-0.58062	-0.00027268	469.6278834827025	89.861	0.065178	89.861	89.813	89.878	0					9	6	2	0	0	0	0.33348	1	23792	23792		0.40827	0.31342	1	91298	+		39894	23091	23171	23172	48527	48527					0.17630303419355187
RQRLLLREQ	9	Unmodified	_RQRLLLREQ_					0	0	0		ENST00000492047.1_1_2:74686007-74686662:+|nuORF	ENST00000492047.1_1_2:74686007-74686662:+|nuORF	ENST00000492047.1_1_2:74686007-74686662:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3695678710938	2	606.370195	1210.72584	0.061617	3.7362E-05	0.25428	0.00015419	0.3159	0.00019155	606.3701678018867	111.58	0.54704	111.58	111.46	112.01	0					115	69	2	0	0	0	0.35776	1	29033	29033		0.45834	0	1	142490			39895	11189	23172	23173	48528	48528					0.12890394539795125
RQRREFREKRL	11	Unmodified	_RQRREFREKRL_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3097534179688	3	525.309718	1572.90732	0.35525	0.00018662	0.059549	3.1282E-05	0.4148	0.0002179	525.3096652742355	95.861	2.1594	95.938	94.551	96.71	0.077408					569	196	4	0	0	0	0.47633	2	25745	25626;25745		1.2148	0	1	1130000			39896	1926	23173	23174	48529;48530	48530					0.14378707565538207
RQRREFREKRL	11	Unmodified	_RQRREFREKRL_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.31005859375	3	525.309718	1572.90732	0.55958	0.00029395	-0.082352	-4.326E-05	0.47723	0.00025069	525.3096041725858	95.918	1.503	95.914	95.267	96.77	-0.0038147					424	147	4	0	0	0	0.47633	2	25674	25512;25674		1.2148	0	1	996780			39897	1926	23173	23174	48531;48532	48532					0.14378707565538207
RQRREFREKRL	11	Unmodified	_RQRREFREKRL_					0	0	0		nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	nc|ENSG00000104859|Q8N2M8-3|CLASRP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3096923828125	3	525.309718	1572.90732	0.5161	0.00027111	0.23407	0.00012296	0.75017	0.00039407	525.3096391676545	97.374	1.0388	97.368	96.683	97.722	-0.0055466					399	106	5	0	0	0	0.47633	3	25954	25954;25993;26104		1.2148	0	1	2384700			39898	1926	23173	23174	48533;48534;48535	48533					0.14378707565538207
RQRRLYRFA	9	Unmodified	_RQRRLYRFA_					0	0	0			REV__nc|ENSG00000125675|P42263|GRIA3	REV__nc|ENSG00000125675|P42263|GRIA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3685913085938	2	633.37053	1264.72651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.88	1	119.88	119.38	120.38	0								0	0	0	0.2672	1	30911	30911		0.52476	0	1		+		39899	15276	23174	23175	48536	48536					0.10473233979519136
RQRRRRGQGP	10	Unmodified	_RQRRRRGQGP_					0	0	0			REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF	REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8711547851562	2	633.87176	1265.72897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.88	1	117.88	117.38	118.38	0								0	0	0	0.38202	1	30470	30470		0.40072	0	1		+		39900	21943	23175	23176	48537	48537					0.10673082437165249
RQRRRRPPRGP	11	Unmodified	_RQRRRRPPRGP_					0	0	0		ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.8155822753906	3	477.959131	1430.85556	0.11513	5.5027E-05	-0.079486	-3.7991E-05	0.035644	1.7036E-05	477.9590762378562	92.08	3.2471	92.08	91.205	94.452	0					578	259	4	0	0	0	0.33351	1	25026	25026		0.094841	0	1	2362200			39901	10578	23176	23177	48538	48538					0.15737008662290464
RQRRRRPPRGP	11	Unmodified	_RQRRRRPPRGP_					0	0	0		ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.9592590332031	3	477.959131	1430.85556	0.22439	0.00010725	-0.079423	-3.7961E-05	0.14496	6.9287E-05	477.95906847192856	92.533	1.8765	92.622	92.23	94.107	0.089195					378	153	4	0	0	0	0.48486	1	24957	24957		0.094841	0	1	3303500			39902	10578	23176	23177	48539	48539					0.15737008662290464
RQRRRRPPRGP	11	Unmodified	_RQRRRRPPRGP_					0	0	0		ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	477.959131	1430.85556	0.24572	0.00011744	-0.097931	-4.6807E-05	0.14779	7.0638E-05	477.9590361364369	91.927	0.95927	92.017	91.378	92.337	0.090668	-0.031267	-1.9141E-05	NaN	0.094841	178	67	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4122000			39903	10578	23176	23177							0.15737008662290464
RQRSALTV	8	Unmodified	_RQRSALTV_					0	0	0		nc|ENSG00000198556|Q5FWF6-2|ZNF789;ENSG00000198556|ENST00000331410|ZNF789	nc|ENSG00000198556|Q5FWF6-2|ZNF789	nc|ENSG00000198556|Q5FWF6-2|ZNF789	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7773742675781	2	465.777608	929.540663	0.29394	0.00013691	-0.13788	-6.4221E-05	0.15606	7.2688E-05	465.7774408601235	71.615	3.3981	71.588	70.637	74.035	-0.027275					249	122	4	0	0	0	0.45307	1	18042	18042		4.756	0	1	3172700			39904	8088	23177	23178	48540	48540					0.07307411740180214
RQRTRRAKAWL	11	Unmodified	_RQRTRRAKAWL_					0	0	0			REV__ENST00000328024.10_1_19:8468843-8468972:+|nuORF	REV__ENST00000328024.10_1_19:8468843-8468972:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2825012207031	3	481.291887	1440.85383	0.093801	4.5146E-05	-1.0585	-0.00050946	-0.96473	-0.00046432	481.2914083892703	28.57	0.33015	28.566	28.359	28.689	-0.0042572					18	11	2	0	0	0	0.46392	1	4995	4995		2.8433	0.59056	1	196130	+		39905	20011	23178	23179	48541	48541					0.15103954853702817
RQRYNYWFRHI	11	Unmodified	_RQRYNYWFRHI_					0	0	0			REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.1863098144531	4	410.465467	1637.83276	-0.36623	-0.00015032	-1.0574	-0.00043404	-1.4237	-0.00058436	410.4651272563933	14.215	0.50624	14.215	14.055	14.561	0					45	17	5	0	0	0	0.33352	1	702	702		0	0	1	76804	+		39906	17648	23179	23180	48542	48542					0.039359447541528425
RQRYNYWFRHI	11	Unmodified	_RQRYNYWFRHI_					0	0	0			REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.1865539550781	4	410.465467	1637.83276	-0.17951	-7.3684E-05	-1.2956	-0.00053181	-1.4751	-0.00060549	410.46488595715323	14.416	0.46063	14.312	14.105	14.565	-0.10466					36	15	3	0	0	0	0.33352	1	765	765		0	0	1	67866	+		39907	17648	23179	23180	48543	48543					0.039359447541528425
RQRYNYWFRHI	11	Unmodified	_RQRYNYWFRHI_					0	0	0			REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.18646240234375	4	410.465467	1637.83276	-0.22355	-9.176E-05	-1.1796	-0.00048417	-1.4031	-0.00057593	410.71572664044834	14.434	0.46406	14.368	14.124	14.588	-0.066068					42	16	3	0	0	0	0.33352	1	761	761		0	0	1	58464	+		39908	17648	23179	23180	48544	48544					0.039359447541528425
RQSLRRRKPA	10	Unmodified	_RQSLRRRKPA_					0	0	0		ENSG00000105245|ENST00000252891|NUMBL;ENST00000599594.1_1_19:41188932-41196472:-|nuORF;ENST00000598759.1_1_19:41190048-41190504:-|nuORF	ENSG00000105245|ENST00000252891|NUMBL	ENSG00000105245|ENST00000252891|NUMBL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.87677001953125	3	423.26545	1266.77452	-0.059639	-2.5243E-05	-2.6552	-0.0011239	-2.7149	-0.0011491	423.59876175444975	43.031	0.25227	43.031	42.954	43.206	0					9	8	2	0	0	0	0.32143	1	9439	9439		0.56317	0.15491	1	72526			39909	1957	23180	23181	48545	48545					0.15180307899549916
RQSRRKST	8	Unmodified	_RQSRRKST_					0	0	0		nc|ENSG00000175513|Q3SY00-2|TSGA10IP;ENSG00000175513|ENST00000532620|TSGA10IP	nc|ENSG00000175513|Q3SY00-2|TSGA10IP	nc|ENSG00000175513|Q3SY00-2|TSGA10IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2936706542969	2	509.796863	1017.57917	-0.0243	-1.2388E-05	-2.9534	-0.0015056	-2.9777	-0.001518	509.79516313111634	12.661	0.26662	12.561	12.407	12.673	-0.099291					17	8	3	0	0	0	0.34345	1	197	197		5.7319	0.97584	1	81609			39910	6870	23181	23182	48546	48546					0.07108717374717344
RQVHPSAKP	9	Unmodified	_RQVHPSAKP_					0	0	0			REV__Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|8|1|sense	REV__Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|8|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7949523925781	2	510.290882	1018.56721	-0.17267	-8.8112E-05	0.79126	0.00040377	0.61859	0.00031566	510.2911984948244	12.799	0.18083	12.731	12.61	12.791	-0.067496					9	5	2	0	0	0	0.25706	1	208	208		6.7232	1.4925	1	18827	+		39911	22727	23182	23183	48547	48547					0.05867100631519406
RQVQANKVL	9	Unmodified	_RQVQANKVL_					0	0	0			REV__ENSG00000114331|ENST00000326793|ACAP2	REV__ENSG00000114331|ENST00000326793|ACAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3197631835938	2	528.31964	1054.62473	0.32983	0.00017426	-0.098632	-5.2109E-05	0.2312	0.00012215	528.3196211063254	26.931	0.90942	26.91	26.65	27.559	-0.021412					92	31	4	0	0	0	0.17787	1	4538	4538		26.884	8.7373	1	630710	+		39912	14830	23183	23184	48548	48548					0.09959942837076596
RQVQANKVL	9	Unmodified	_RQVQANKVL_					0	0	0			REV__ENSG00000114331|ENST00000326793|ACAP2	REV__ENSG00000114331|ENST00000326793|ACAP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	528.31964	1054.62473	0.32983	0.00017426	-0.098632	-5.2109E-05	0.2312	0.00012215	528.3196211063254	26.931	0.90942	26.91	26.65	27.559	-0.021412	-0.028193	-6.5611E-05	NaN	26.884	92	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	630710	+		39913	14830	23183	23184							0.09959942837076596
RQVQANKVL	9	Unmodified	_RQVQANKVL_					0	0	0			REV__ENSG00000114331|ENST00000326793|ACAP2	REV__ENSG00000114331|ENST00000326793|ACAP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.31964	1054.62473	0.5019	0.00026516	-0.038266	-2.0216E-05	0.46363	0.00024495	528.3195695601338	26.981	0.99433	26.97	26.651	27.645	-0.01156	0.032024	-1.825E-06	NaN	26.884	79	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	645830	+		39914	14830	23183	23184							0.09959942837076596
RQVRRDLF	8	Unmodified	_RQVRRDLF_					0	0	0		nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4	nc|ENSG00000114904|P51957-3|NEK4	nc|ENSG00000114904|P51957-3|NEK4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3168334960938	2	545.317432	1088.62031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.04	1	116.02	115.52	116.52	-0.02121								0	0	0	0.37992	1	30072	30072		0.79363	0	1				39915	2593	23184	23185	48549	48549					0.07954478414171717
RQVRRDLF	8	Unmodified	_RQVRRDLF_					0	0	0		nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4	nc|ENSG00000114904|P51957-3|NEK4	nc|ENSG00000114904|P51957-3|NEK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.6612548828125	2	545.317432	1088.62031	0.55138	0.00030068	-1.473	-0.00080325	-0.92161	-0.00050257	545.3162319318255	99.376	0.18527	99.369	99.298	99.483	-0.006897					34	23	2	0	0	0	0.34185	1	26618	26618		10.183	10.183	1	97950			39916	2593	23184	23185	48550	48550					0.07954478414171717
RQWKLKHK	8	Unmodified	_RQWKLKHK_					0	0	0		nc|ENSG00000100629|Q6ZU80-1|CEP128;ENSG00000100629|ENST00000555265|CEP128	nc|ENSG00000100629|Q6ZU80-1|CEP128	nc|ENSG00000100629|Q6ZU80-1|CEP128	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.345458984375	2	562.345992	1122.67743	-0.14983	-8.4258E-05	-1.0391	-0.00058433	-1.1889	-0.00066859	562.3453394527384	13.092	0.28416	13.025	12.878	13.162	-0.067495					19	9	3	0	0	0	0.46491	1	335	335		0.69038	0	1	70252			39917	1619	23185	23186	48551	48551					0.12099945690556524
RQWKLKHK	8	Unmodified	_RQWKLKHK_					0	0	0		nc|ENSG00000100629|Q6ZU80-1|CEP128;ENSG00000100629|ENST00000555265|CEP128	nc|ENSG00000100629|Q6ZU80-1|CEP128	nc|ENSG00000100629|Q6ZU80-1|CEP128	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	562.345992	1122.67743	-0.061204	-3.4418E-05	-1.3715	-0.00077126	-1.4327	-0.00080568	562.3452213051694	13.021	0.2733	13.021	12.874	13.147	0	0.0075849	-3.1229E-05	NaN	0.69038	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68201			39918	1619	23185	23186							0.12099945690556524
RQWKLKHK	8	Unmodified	_RQWKLKHK_					0	0	0		nc|ENSG00000100629|Q6ZU80-1|CEP128;ENSG00000100629|ENST00000555265|CEP128	nc|ENSG00000100629|Q6ZU80-1|CEP128	nc|ENSG00000100629|Q6ZU80-1|CEP128	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	562.345992	1122.67743	0.029136	1.6385E-05	-1.4752	-0.00082956	-1.446	-0.00081318	562.3451871131709	13.094	0.34823	12.995	12.841	13.189	-0.099291	-0.018739	-0.00014783	NaN	0.69038	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57409			39919	1619	23185	23186							0.12099945690556524
RQWKLKHK	8	Unmodified	_RQWKLKHK_					0	0	0		nc|ENSG00000100629|Q6ZU80-1|CEP128;ENSG00000100629|ENST00000555265|CEP128	nc|ENSG00000100629|Q6ZU80-1|CEP128	nc|ENSG00000100629|Q6ZU80-1|CEP128	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	562.345992	1122.67743	-0.14983	-8.4258E-05	-1.0391	-0.00058433	-1.1889	-0.00066859	562.3453394527384	13.092	0.28416	13.025	12.878	13.162	-0.067495	0.011154	0.00034264	NaN	0.69038	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70252			39920	1619	23185	23186							0.12099945690556524
RQYLSISK	8	Unmodified	_RQYLSISK_					0	0	0			REV__FAM210A|p.Q116R|1|0.22|ENSG00000177150|chr18:13681731-13681731|T/C|missense_variant	REV__FAM210A|p.Q116R|1|0.22|ENSG00000177150|chr18:13681731-13681731|T/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7874755859375	2	497.787641	993.56073	0.19213	9.5642E-05	-0.011879	-5.913E-06	0.18026	8.9729E-05	497.78748448815435	26.031	0.64786	25.992	25.871	26.519	-0.038671					29	22	2	0	0	0	0.32789	1	4260	4260		27.629	4.8925	1	157350	+		39921	17975	23186	23187	48552	48552					0.06369162680141471
RQYLSISK	8	Unmodified	_RQYLSISK_					0	0	0			REV__FAM210A|p.Q116R|1|0.22|ENSG00000177150|chr18:13681731-13681731|T/C|missense_variant	REV__FAM210A|p.Q116R|1|0.22|ENSG00000177150|chr18:13681731-13681731|T/C|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	497.787641	993.56073	0.22613	0.00011256	0.29758	0.00014813	0.52371	0.0002607	497.78764179425565	26.022	0.55184	26.022	25.798	26.35	0	-0.023785	0.00025276	NaN	27.629	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153660	+		39922	17975	23186	23187							0.06369162680141471
RQYLSISK	8	Unmodified	_RQYLSISK_					0	0	0			REV__FAM210A|p.Q116R|1|0.22|ENSG00000177150|chr18:13681731-13681731|T/C|missense_variant	REV__FAM210A|p.Q116R|1|0.22|ENSG00000177150|chr18:13681731-13681731|T/C|missense_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.787641	993.56073	0.19213	9.5642E-05	-0.011879	-5.913E-06	0.18026	8.9729E-05	497.78748448815435	26.031	0.64786	25.992	25.871	26.519	-0.038671	-0.053522	-5.533E-05	NaN	27.629	29	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157350	+		39923	17975	23186	23187							0.06369162680141471
RQYLSISK	8	Unmodified	_RQYLSISK_					0	0	0			REV__FAM210A|p.Q116R|1|0.22|ENSG00000177150|chr18:13681731-13681731|T/C|missense_variant	REV__FAM210A|p.Q116R|1|0.22|ENSG00000177150|chr18:13681731-13681731|T/C|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	497.787641	993.56073	0.29117	0.00014494	-0.012647	-6.2955E-06	0.27852	0.00013864	497.7875670741159	26.145	0.52336	26.123	25.833	26.356	-0.022238	0.077307	-5.6095E-05	NaN	27.629	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135260	+		39924	17975	23186	23187							0.06369162680141471
RRAAAPAL	8	Unmodified	_RRAAAPAL_					0	0	0			REV__ENSG00000228594|ENST00000422725|FNDC10	REV__ENSG00000228594|ENST00000422725|FNDC10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.58197021484375	2	413.256311	824.49807	0.149	6.1574E-05	-1.9366	-0.00080031	-1.7876	-0.00073874	413.2550438333436	86.429	0.8134	86.429	86.125	86.938	0					65	32	3	0	0	0	0.34434	1	22790	22790		0.79363	0	1	293180	+		39925	19126	23187	23188	48553	48553					0.07880061402590854
RRAAAPAL	8	Unmodified	_RRAAAPAL_					0	0	0			REV__ENSG00000228594|ENST00000422725|FNDC10	REV__ENSG00000228594|ENST00000422725|FNDC10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5818176269531	2	413.256311	824.49807	0.34151	0.00014113	-1.9934	-0.00082379	-1.6519	-0.00068266	413.25514463092117	86.3	0.73181	86.384	86.019	86.751	0.084251					49	28	2	0	0	0	0.344	1	22606	22606		2.5775	0	1	322860	+		39926	19126	23187	23188	48554	48554					0.07880061402590854
RRAAGLSSW	9	Unmodified	_RRAAGLSSW_					0	0	0			REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF	REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2979736328125	2	502.275232	1002.53591	0.29328	0.00014731	-0.30927	-0.00015534	-0.015991	-8.032E-06	502.2745296446394	17.544	1.2911	17.544	16.925	18.216	0					110	44	5	0	0	0	0.27532	1	1586	1586		12.532	0.89125	1	994190	+		39927	20973	23188	23189	48555	48555					0.03474527597427368
RRAAGMVL	8	Unmodified	_RRAAGMVL_					0	0	0		ENST00000307450.10_1_10:99377052-99379376:-|nuORF	ENST00000307450.10_1_10:99377052-99379376:-|nuORF	ENST00000307450.10_1_10:99377052-99379376:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2370910644531	2	437.257997	872.501441	0.41937	0.00018337	-0.77985	-0.00034099	-0.36047	-0.00015762	437.2576857363816	77.872	0.56378	77.872	77.58	78.144	0					38	20	3	0	0	0	0.34319	1	20047	20047		2.5775	2.5775	1	217580			39928	9278	23189	23190	48556	48556					0.060089881849762605
RRAAQVSP	8	Unmodified	_RRAAQVSP_					0	0	0			REV__ENSG00000153531|ENST00000612156|ADPRHL1	REV__ENSG00000153531|ENST00000612156|ADPRHL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7750244140625	2	442.756675	883.498798	-0.085288	-3.7762E-05	0.013376	5.9222E-06	-0.071912	-3.184E-05	442.7568670505701	14.782	0.38637	14.717	14.511	14.898	-0.064413					29	13	3	0	0	0	0.34167	1	865	865		11.64	11.64	1	126110	+		39929	16628	23190	23191	48557	48557					0.05238856051653329
RRALARSAAG	10	Unmodified	_RRALARSAAG_					0	0	0			REV__nc|ENSG00000291307|A0A3B3IS91|POLGARF	REV__nc|ENSG00000291307|A0A3B3IS91|POLGARF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.8063354492188	2	514.807231	1027.59991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.617	1	20.565	20.065	21.065	-0.05291								0	0	0	0.38166	1	2591	2591		1.4819	0	1		+		39930	23258	23191	23192	48558	48558					0.08721307754353802
RRALPIMRSL	10	Unmodified	_RRALPIMRSL_					0	0	0		nc|ENSG00000180071|Q8IVF6-2|ANKRD18A	nc|ENSG00000180071|Q8IVF6-2|ANKRD18A	nc|ENSG00000180071|Q8IVF6-2|ANKRD18A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8718872070312	2	606.871517	1211.72848	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.8	1	113.81	113.31	114.31	0.014824								0	0	0	0.38202	1	29603	29603		0.40072	0	1				39931	12864	23192	23193	48559	48559					0.13108526673113374
RRANAMWL	8	Unmodified	_RRANAMWL_					0	0	0			REV__ENST00000342115.8_1_1:110162645-110168822:+|nuORF	REV__ENST00000342115.8_1_1:110162645-110168822:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2743225097656	2	509.274178	1016.5338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.67	1	118.67	118.17	119.17	0								0	0	0	0.37992	1	30645	30645		0.79363	0	1		+		39932	20121	23193	23194	48560	48560					0.0261977558794797
RRARLAEQLGV	11	Unmodified	_RRARLAEQLGV_					0	0	0			REV__ENST00000355202.8_1_19:38210240-38210417:-|nuORF	REV__ENST00000355202.8_1_19:38210240-38210417:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.37890625	2	634.880927	1267.7473	0.47811	0.00030354	-3.3767	-0.0021438	-2.8986	-0.0018403	634.8778301765653	105.44	0.09919	105.44	105.37	105.47	0.0031738					17	13	2	0	0	0	0.33255	1	27956	27956		2.9952	0	1	151330	+		39933	20184	23194	23195	48561	48561					0.12413779568487371
RRARRRRP	8	Unmodified	_RRARRRRP_					0	0	0			REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF	REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3612670898438	2	562.360831	1122.70711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.369	1	98.369	97.869	98.869	0								0	0	0	0.37724	1	26319	26319		2.3027	0	1		+		39934	22565	23195	23196	48562	48562					0.15066322479265182
RRARWRRR	8	Unmodified	_RRARWRRR_					0	0	0		ENST00000373548.7_1_1:32757705-32768263:+|nuORF	ENST00000373548.7_1_1:32757705-32768263:+|nuORF	ENST00000373548.7_1_1:32757705-32768263:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8715209960938	2	606.874105	1211.73366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.62	1	110.6	110.1	111.1	-0.013939								0	0	0	0.37724	1	28849	28849		2.3027	0.82083	1				39935	9869	23196	23197	48563	48563					0.13626011370570268
RRASMRKWTL	10	Unmodified	_RRASMRKWTL_					0	0	0			REV__ENSG00000188938|ENST00000375412|FAM120AOS	REV__ENSG00000188938|ENST00000375412|FAM120AOS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.2539978027344	3	435.583791	1303.72954	0.14867	6.4757E-05	2.0552	0.00089522	2.2039	0.00095998	435.58458095823556	85.746	0.77046	85.83	85.391	86.162	0.084251					40	28	2	0	0	0	0.3213	1	22610	22610		0.69767	0.24315	1	148590	+		39936	18583	23197	23198	48564	48564					0.08982741041995723
RRAYVDYD	8	Unmodified	_RRAYVDYD_					0	0	0			REV__nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	REV__nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2572631835938	2	529.256705	1056.49886	0.18057	9.557E-05	-0.14494	-7.6713E-05	0.035629	1.8857E-05	529.2565220057785	14.983	0.64646	14.919	14.511	15.158	-0.064413					46	22	3	0	0	0	0.46491	1	908	908		0.69038	0	1	132230	+		39937	14312	23198	23199	48565	48565					-0.027131887389941767
RRCACDDCSL	10	Unmodified	_RRCACDDCSL_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.A356Sfs*2|1|0.41|ENSG00000125386|chr4:2663145-2663146|-/A|frameshift_variant;nc|ENSG00000125386|P78312-3|FAM193A;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2308349609375	2	571.230993	1140.44743	0.25881	0.00014784	-0.18599	-0.00010625	0.072813	4.1593E-05	571.2306469994909	70.799	0.72351	70.799	70.434	71.157	0					57	25	3	0	0	0	0.33594	1	17977	17977		15.248	4.4246	1	525040			39938	3201	23199	23200	48566	48566					-0.11717340091240658
RRCACDDCSL	10	Unmodified	_RRCACDDCSL_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.A356Sfs*2|1|0.41|ENSG00000125386|chr4:2663145-2663146|-/A|frameshift_variant;nc|ENSG00000125386|P78312-3|FAM193A;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.23095703125	2	571.230993	1140.44743	0.33349	0.0001905	-0.065543	-3.744E-05	0.26794	0.00015306	571.2307088555102	70.855	0.61094	70.83	70.466	71.077	-0.024872					52	21	3	0	0	0	0.33594	1	17982	17982		15.248	5.8654	1	481350			39939	3201	23199	23200	48567	48567					-0.11717340091240658
RRCMVFKEL	9	Unmodified	_RRCMVFKEL_					0	0	0		ENSG00000136931|ENST00000373588|NR5A1	ENSG00000136931|ENST00000373588|NR5A1	ENSG00000136931|ENST00000373588|NR5A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.278076171875	2	591.317728	1180.6209	0.52218	0.00030878	0.18747	0.00011085	0.70965	0.00041963	591.3178394527781	29.098	0.45283	29.098	28.791	29.244	0					23	16	2	0	0	0	0.25202	1	5134	5134		10.824	0	1	103450			39940	4015	23200	23201	48568	48568					0.037818137473777824
RRCPPLLRGLV	11	Unmodified	_RRCPPLLRGLV_					0	0	0		ENST00000462924.5_1_10:99206088-99212597:+|nuORF;nc|ENSG00000171307|Q969W1-4|ZDHHC16;nc|ENSG00000171307|Q969W1-3|ZDHHC16;nc|ENSG00000171307|Q969W1-2|ZDHHC16;ENSG00000171307|ENST00000393760|ZDHHC16	ENST00000462924.5_1_10:99206088-99212597:+|nuORF	ENST00000462924.5_1_10:99206088-99212597:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.3927001953125	2	640.392616	1278.77068	0.73966	0.00047367	0.45684	0.00029256	1.1965	0.00076623	640.392743798799	47.806	1.1129	47.849	47.53	48.643	0.043324					107	41	3	0	0	0	0.47633	2	10929	10929;10935		1.1933	0	1	4434000			39941	6533	23201	23202	48569;48570	48569					0.14244502081487553
RRCPTPQTR	9	Unmodified	_RRCPTPQTR_					0	0	0			REV__nc|ENSG00000146374|Q9BXY4-2|RSPO3	REV__nc|ENSG00000146374|Q9BXY4-2|RSPO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7996215820312	2	557.798549	1113.58254	-0.033601	-1.8742E-05	2.3962	0.0013366	2.3626	0.0013178	557.7997895774402	13.61	0.27597	13.511	13.362	13.638	-0.099291					20	9	3	0	0	0	0.26188	1	491	491		1.6526	0.32309	1	76176	+		39942	23021	23202	23203	48571	48571					0.03029644157027178
RRCSRREWR	9	Unmodified	_RRCSRREWR_					0	0	0			REV__ENSG00000075290|ENST00000343737|WNT8B	REV__ENSG00000075290|ENST00000343737|WNT8B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.88214111328125	3	435.567023	1303.67924	-0.30857	-0.0001344	1.5052	0.0006556	1.1966	0.00052119	435.5677827557009	15.579	0.61005	15.579	15.257	15.867	0					46	20	3	0	0	0	0.26127	1	1080	1080		2.7352	0.82882	1	102380	+		39943	13806	23203	23204	48572	48572					0.03954631436863565
RRCWELLCMKP	11	Unmodified	_RRCWELLCMKP_					0	0	0			REV__ENSG00000167264|ENST00000565263|DUS2	REV__ENSG00000167264|ENST00000565263|DUS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.27716064453125	3	478.91041	1433.7094	0.25195	0.00012066	-0.40277	-0.00019289	-0.15082	-7.223E-05	478.90896200712695	72.243	0.13616	72.243	72.184	72.32	0					6	4	2	0	0	0	0.33236	1	18429	18429		4.4062	1.7749	1	57926	+		39944	17373	23204	23205	48573	48573					0.00989485995501127
RRDAEVVL	8	Unmodified	_RRDAEVVL_					0	0	0		nc|ENSG00000107815|Q96RR1-3|TWNK;nc|ENSG00000107815|Q96RR1-2|TWNK;ENSG00000107815|ENST00000311916|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.27734375	2	479.277441	956.540328	0.31867	0.00015273	-0.019674	-9.4295E-06	0.299	0.0001433	479.27730538761404	74.074	3.3857	74.044	73.152	76.538	-0.030663					252	123	3	0	0	0	0.45431	1	18783	18783		4.3292	4.3292	1	4993700			39945	2148	23205	23206	48574	48574					0.06031992020314192
RRDFLYVTR	9	Unmodified	_RRDFLYVTR_					0	0	0			REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	613.3323974609375	2	613.343646	1224.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.856	1	47.904	47.404	48.404	0.047523								0	0	0	0.22756	1	10900	10900		13.906	0	1		+		39946	14279	23206	23207	48575	48575					0.06939016757110039
RRDGRTNRL	9	Unmodified	_RRDGRTNRL_					0	0	0			REV__ENST00000301204.7_1_19:42828913-42829189:+|nuORF	REV__ENST00000301204.7_1_19:42828913-42829189:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.3030395507812	2	572.326319	1142.63809	0.064871	3.7128E-05	2.2408	0.0012825	2.3057	0.0013196	572.3278899739317	25.911	0.36239	25.911	25.798	26.161	0					19	12	2	0	0	0	0.34809	1	4187	4187		1.6526	0.17072	1	109780	+		39947	19818	23207	23208	48576	48576					0.07247193669036278
RRDPRGVARR	10	Unmodified	_RRDPRGVARR_					0	0	0		ENST00000298292.12_1_14:50100549-50100927:-|nuORF	ENST00000298292.12_1_14:50100549-50100927:-|nuORF	ENST00000298292.12_1_14:50100549-50100927:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5821228027344	3	413.581549	1237.72282	0.391	0.00016171	0.30076	0.00012439	0.69176	0.0002861	413.5817780102486	86.097	3.4873	86.088	84.794	88.281	-0.0090027					334	151	4	0	0	0	0.41085	1	22828	22828		0.62683	0.62683	1	1135900			39948	9205	23208	23209	48577	48577					0.11346564205632603
RREAAPLRRK	10	Unmodified	_RREAAPLRRK_					0	0	0			REV__ENST00000361367.6_1_11:10772894-10774273:+|nuORF	REV__ENST00000361367.6_1_11:10772894-10774273:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.5603942871094	3	418.261817	1251.76362	-0.17539	-7.336E-05	-0.28072	-0.00011742	-0.45612	-0.00019078	418.26162734312294	12.978	0.31161	12.879	12.757	13.069	-0.099291					15	10	2	0	0	0	0.32174	1	286	286		0.15932	0	1	9691.1	+		39949	20279	23209	23210	48578	48578					0.1478090552525373
RREAAPLRRK	10	Unmodified	_RREAAPLRRK_					0	0	0			REV__ENST00000361367.6_1_11:10772894-10774273:+|nuORF	REV__ENST00000361367.6_1_11:10772894-10774273:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	418.261817	1251.76362	-0.27721	-0.00011594	-0.58384	-0.0002442	-0.86105	-0.00036014	418.2615486531542	12.94	0.14523	12.872	12.791	12.936	-0.067495	-0.00336	-0.00035018	NaN	0.69767	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12420	+		39950	20279	23209	23210							0.1478090552525373
RRELANKYK	9	Unmodified	_RRELANKYK_					0	0	0			REV__ENST00000324309.8_1_4:24833126-24981729:-|nuORF	REV__ENST00000324309.8_1_4:24833126-24981729:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3424072265625	2	589.343646	1176.67274	0.53659	0.00031623	-1.6027	-0.00094455	-1.0661	-0.00062831	589.3424349894842	92.188	0.83817	92.189	91.685	92.523	0.00046539					82	55	2	0	0	0	0.31038	1	24393	24393		7.2892	1.0834	1	256790	+		39951	18174	23210	23211	48579	48579					0.09147016757128767
RREPVPFP	8	Unmodified	_RREPVPFP_					0	0	0		ENSG00000134046|ENST00000256429|MBD2;nc|ENSG00000134046|Q9UBB5-3|MBD2	ENSG00000134046|ENST00000256429|MBD2	ENSG00000134046|ENST00000256429|MBD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.27020263671875	2	499.282526	996.550499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.977	1	20.924	20.424	21.424	-0.05291								0	0	0	0.37183	1	2700	2700		4.756	0	1				39952	3750	23211	23212	48580	48580					0.05208599745560605
RRERCGRHLL	10	Unmodified	_RRERCGRHLL_					0	0	0		ENST00000486818.5_1_7:72951241-72951538:-|nuORF	ENST00000486818.5_1_7:72951241-72951538:-|nuORF	ENST00000486818.5_1_7:72951241-72951538:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	648.3648071289062	2	648.364921	1294.71529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.98	1	117	116.5	117.5	0.020988								0	0	0	0.38202	1	30337	30337		0.40072	0	1				39953	11107	23212	23213	48581	48581					0.07972088613723827
RRERCQFTL	9	Unmodified	_RRERCQFTL_					0	0	0		nc|ENSG00000156026|Q8NE86-3|MCU;nc|ENSG00000156026|Q8NE86-2|MCU;ENSG00000156026|ENST00000373053|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.5690612792969	3	403.548746	1207.62441	-0.18143	-7.3217E-05	-4.3213	-0.0017439	-4.5028	-0.0018171	403.547641090512	17.902	0.12417	17.902	17.835	17.96	0					5	3	2	0	0	0	0.26169	1	1780	1780		2.2828	0.3764	1	7370.7			39954	5214	23213	23214	48582	48582					0.028901998455921785
RREVKKSLPV	10	Unmodified	_RREVKKSLPV_					0	0	0			REV__ENSG00000198042|ENST00000360128|MAK16	REV__ENSG00000198042|ENST00000360128|MAK16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3702392578125	2	606.382771	1210.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.4	1	110.41	109.91	110.91	0.0099411								0	0	0	0.38166	1	28836	28836		1.4819	0.41044	1		+		39955	18792	23214	23215	48583	48583					0.15404449342349835
RRFAIFQSTK	10	Unmodified	_RRFAIFQSTK_					0	0	0			REV__ENSG00000127311|ENST00000247815|HELB	REV__ENSG00000127311|ENST00000247815|HELB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.3599243164062	2	627.359296	1252.70404	-0.094264	-5.9137E-05	0.48429	0.00030382	0.39002	0.00024468	627.359622316292	25.602	0.417	25.571	25.265	25.682	-0.031408					20	14	2	0	0	0	0.4155	1	4103	4103		0.35063	0	1	75184	+		39956	15334	23215	23216	48584	48584					0.08779589791220133
RRFAKGVQ	8	Unmodified	_RRFAKGVQ_					0	0	0		nc|ENSG00000196642|Q3YEC7-3|RABL6;nc|ENSG00000196642|Q3YEC7-4|RABL6;nc|ENSG00000196642|Q3YEC7-5|RABL6;nc|ENSG00000196642|Q3YEC7-6|RABL6;ENSG00000196642|ENST00000311502|RABL6;nc|ENSG00000196642|Q3YEC7-2|RABL6;ENST00000459985.1_1_9:139702417-139703723:+|nuORF;ENST00000415992.5_1_9:139702603-139703092:+|nuORF	nc|ENSG00000196642|Q3YEC7-3|RABL6	nc|ENSG00000196642|Q3YEC7-3|RABL6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7713623046875	2	481.288143	960.561733	-0.11227	-5.4037E-05	-1.8734	-0.00090165	-1.9857	-0.00095569	481.2872921173369	13.552	0.35481	13.484	13.275	13.63	-0.067496					21	12	2	0	0	0	0.34408	1	471	471		2.3027	0.82083	1	37438			39957	12897	23216	23217	48585	48585					0.07987421839709441
RRFDHPII	8	Unmodified	_RRFDHPII_					0	0	0			REV__ITGAM|p.D529Tfs*2|1|0.31|ENSG00000169896|chr16:31297828-31297828|G/-|frameshift_variant	REV__ITGAM|p.D529Tfs*2|1|0.31|ENSG00000169896|chr16:31297828-31297828|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.28369140625	2	527.30125	1052.58795	0.50989	0.00026886	-1.5572	-0.00082112	-1.0473	-0.00055225	527.3000311181368	89.545	0.28852	89.636	89.465	89.754	0.090561					31	20	2	0	0	0	0.45169	1	23703	23703		5.2307	0.47466	1	99410	+		39958	17550	23217	23218	48586	48586					0.06375691011180606
RRFFQRGR	8	Unmodified	_RRFFQRGR_					0	0	0		ENST00000449169.1_1_1:110835106-110881762:-|nuORF	ENST00000449169.1_1_1:110835106-110881762:-|nuORF	ENST00000449169.1_1_1:110835106-110881762:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.3026123046875	2	561.823215	1121.63188	-0.056189	-3.1568E-05	0.23551	0.00013231	0.17932	0.00010075	561.8233353431236	13.116	0.22445	13.116	13.003	13.227	0					11	7	2	0	0	0	0.34437	1	353	353		0.69038	0	1	16296			39959	10627	23218	23219	48587	48587					0.07592720228194594
RRFGQFHLAL	10	Unmodified	_RRFGQFHLAL_					0	0	0		ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD	ENSG00000049239|ENST00000377403|H6PD	ENSG00000049239|ENST00000377403|H6PD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8543090820312	2	622.854181	1243.69381	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.274	1	12.206	11.706	12.706	-0.06806								0	0	0	0.38209	1	77	77		0	0	1				39960	647	23219	23220	48588	48588					0.08171026856689423
RRFGQFHLAL	10	Unmodified	_RRFGQFHLAL_					0	0	0		ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD	ENSG00000049239|ENST00000377403|H6PD	ENSG00000049239|ENST00000377403|H6PD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8543090820312	2	622.854181	1243.69381	-0.24781	-0.00015435	0.13261	8.2599E-05	-0.11519	-7.1748E-05	622.8542115799397	12.22	0.12592	12.152	12.1	12.226	-0.06806					7	4	2	0	0	0	0.32176	1	77	77		0	0	1	17433			39961	647	23219	23220	48589	48589					0.08171026856689423
RRFGQFHLAL	10	Unmodified	_RRFGQFHLAL_					0	0	0		ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD	ENSG00000049239|ENST00000377403|H6PD	ENSG00000049239|ENST00000377403|H6PD	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	622.854181	1243.69381	-0.19798	-0.00012331	-0.18512	-0.0001153	-0.38309	-0.00023861	623.3557120745271	12.204	0.14108	12.107	12.037	12.178	-0.096607	-0.022383	-8.105E-05	NaN	0	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19887			39962	647	23219	23220							0.08171026856689423
RRFIERTHPN	10	Unmodified	_RRFIERTHPN_					0	0	0			REV__ENSG00000187987|ENST00000289788|ZSCAN23	REV__ENSG00000187987|ENST00000289788|ZSCAN23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.2841796875	3	442.577693	1324.71125	0.19134	8.4681E-05	0.67183	0.00029734	0.86317	0.00038202	442.9122960764038	43.134	0.16702	43.134	42.982	43.149	0					6	5	2	0	0	0	0.31942	1	9416	9416		6.1918	2.3155	1	42992	+		39963	18533	23220	23221	48590	48590					0.061883223916538554
RRFLDPRRRR	10	Unmodified	_RRFLDPRRRR_					0	0	0			REV__ENSG00000152795|ENST00000295470|HNRNPDL	REV__ENSG00000152795|ENST00000295470|HNRNPDL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.6238098144531	3	476.623748	1426.84942	0.034924	1.6646E-05	0.44361	0.00021143	0.47853	0.00022808	476.6238373201206	102.98	0.53136	102.99	102.54	103.07	0.0086594					242	73	5	0	0	0	0.4155	1	27304	27304		0.62683	0.62683	1	3210000	+		39964	16597	23221	23222	48591	48591					0.1530649043077119
RRFLNSRYQ	9	Unmodified	_RRFLNSRYQ_					0	0	0		ENST00000256935.12_1_5:169510065-169510173:+|nuORF	ENST00000256935.12_1_5:169510065-169510173:+|nuORF	ENST00000256935.12_1_5:169510065-169510173:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8690795898438	2	620.338895	1238.66324	-0.11029	-6.8415E-05	0.92583	0.00057433	0.81554	0.00050591	620.3399169118821	101.63	0.06324	101.65	101.63	101.69	0.027214					10	8	2	0	0	0	0.2615	1	27101	27101		1.8442	0	1	35355			39965	8934	23222	23223	48592	48592					0.05345248471621744
RRFMLHVKL	9	Unmodified	_RRFMLHVKL_					0	0	0		ENST00000475441.5_1_1:28905087-28907099:-|nuORF	ENST00000475441.5_1_1:28905087-28907099:-|nuORF	ENST00000475441.5_1_1:28905087-28907099:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.863525390625	2	600.363327	1198.7121	0.12105	7.2675E-05	0.99236	0.00059578	1.1134	0.00066845	600.3640839281995	12.022	0.0891	12.022	12.011	12.1	0					6	4	2	0	0	0	0.26282	1	11	11		0	0	1	8352			39966	10932	23223	23224	48593	48593					0.12069445507017917
RRFQISPS	8	Unmodified	_RRFQISPS_					0	0	0		ENST00000306052.10_1_1:53711551-53711623:-|nuORF	ENST00000306052.10_1_1:53711551-53711623:-|nuORF	ENST00000306052.10_1_1:53711551-53711623:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2401428222656	2	495.777608	989.540663	-0.028105	-1.3934E-05	0.072136	3.5763E-05	0.044031	2.1829E-05	495.77769114346415	25.079	0.58199	25.047	24.765	25.347	-0.03141					23	19	2	0	0	0	0.34408	1	3858	3858		2.3027	0	1	31318			39967	9272	23224	23225	48594	48594					0.0454741174019091
RRFQISPS	8	Unmodified	_RRFQISPS_					0	0	0		ENST00000306052.10_1_1:53711551-53711623:-|nuORF	ENST00000306052.10_1_1:53711551-53711623:-|nuORF	ENST00000306052.10_1_1:53711551-53711623:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	495.777608	989.540663	0.36284	0.00017989	-0.60221	-0.00029856	-0.23937	-0.00011867	495.77730415133675	24.934	0.39215	24.934	24.79	25.182	0	-0.056797	-0.00050891	NaN	2.3027	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38570			39968	9272	23224	23225							0.0454741174019091
RRFRRCCFPG	10	Unmodified	_RRFRRCCFPG_					0	0	0		ENST00000414946.1_2_2:152145569-152146249:-|nuORF	ENST00000414946.1_2_2:152145569-152146249:-|nuORF	ENST00000414946.1_2_2:152145569-152146249:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.8979187011719	3	433.222088	1296.64443	-0.40507	-0.00017548	1.8443	0.000799	1.4392	0.00062351	433.5569111315143	14.377	0.11623	14.377	14.307	14.423	0					5	3	2	0	0	0	0.3213	1	719	719		0.69767	0	1	7173.3			39969	10303	23225	23226	48595	48595					0.007976723045203471
RRFWNVHFIR	10	Unmodified	_RRFWNVHFIR_					0	0	0			REV__nc|ENSG00000100889|Q16822-3|PCK2	REV__nc|ENSG00000100889|Q16822-3|PCK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.3107604980469	3	477.602062	1429.78436	0.24616	0.00011757	2.4128	0.0011524	2.659	0.0012699	477.6031842960478	52.891	0.11213	52.882	52.837	52.949	-0.0096054					5	3	2	0	0	0	0.32095	1	12454	12454		3.0723	1.9625	1	108700	+		39970	14235	23226	23227	48596	48596					0.08665495904915588
RRGESVLP	8	Unmodified	_RRGESVLP_					0	0	0			REV__ENST00000339758.7_1_10:69597778-69597814:-|nuORF	REV__ENST00000339758.7_1_10:69597778-69597814:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.26434326171875	2	457.264333	912.514114	0.23629	0.00010805	-0.064452	-2.9471E-05	0.17184	7.8577E-05	457.26421229697945	73.058	1.9871	73.028	72.657	74.644	-0.029305					175	71	4	0	0	0	0.4419	1	18559	18559		8.5933	0	1	2046400	+		39971	20102	23227	23228	48597	48597					0.054357228488470355
RRGGGKHG	8	Unmodified	_RRGGGKHG_					0	0	0		ENST00000566205.1_1_15:82555156-82555264:+|nuORF	ENST00000566205.1_1_15:82555156-82555264:+|nuORF	ENST00000566205.1_1_15:82555156-82555264:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2582092285156	2	412.733535	823.452517	0.30538	0.00012604	-2.8849	-0.0011907	-2.5795	-0.0010646	412.73043112152175	88.416	0.093033	88.505	88.455	88.548	0.089195					5	3	2	0	0	0	0.34445	1	23344	23344		0	0	1	25094			39972	11978	23228	23229	48598	48598					0.03372835940228924
RRGGPIKLNLD	11	Unmodified	_RRGGPIKLNLD_					0	0	0			REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.869384765625	2	619.870028	1237.7255	0.059321	3.6771E-05	-0.043359	-2.6877E-05	0.015962	9.8941E-06	619.8691191290153	95.362	0.55869	95.362	94.896	95.455	0					76	50	2	0	0	0	0.47649	1	25463	25463		1.1933	0	1	102730	+		39973	21438	23229	23230	48599	48599					0.11614974819917734
RRGGPIKLNLD	11	Unmodified	_RRGGPIKLNLD_					0	0	0			REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8690795898438	2	619.870028	1237.7255	0.062926	3.9006E-05	-0.95183	-0.00059001	-0.8889	-0.000551	619.868719966398	93.573	1.1792	93.66	93.295	94.475	0.08667					72	44	2	0	0	0	0.44828	1	25000	25000		4.897	0	1	211960	+		39974	21438	23229	23230	48600	48600					0.11614974819917734
RRGGPIKLNLD	11	Unmodified	_RRGGPIKLNLD_					0	0	0			REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8695068359375	2	619.870028	1237.7255	-0.096302	-5.9695E-05	-0.27028	-0.00016754	-0.36658	-0.00022723	620.3715340514722	98.896	0.196	98.947	98.815	99.011	0.050888					35	25	2	0	0	0	0.46655	1	26463	26463		2.4985	1.0166	1	142640	+		39975	21438	23229	23230	48601	48601					0.11614974819917734
RRGGPIKLNLD	11	Unmodified	_RRGGPIKLNLD_					0	0	0			REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.86962890625	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.713	1	99.756	99.256	100.26	0.043617								0	0	0	0.37609	1	26664	26664		2.4985	0	1		+		39976	21438	23229	23230	48602	48602					0.11614974819917734
RRGGPIKLNLD	11	Unmodified	_RRGGPIKLNLD_					0	0	0			REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.86962890625	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.62	1	102.63	102.13	103.13	0.016685								0	0	0	0.36517	1	27295	27295		4.897	1.9018	1		+		39977	21438	23229	23230	48603	48603					0.11614974819917734
RRGGPIKLNLD	11	Unmodified	_RRGGPIKLNLD_					0	0	0			REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.86865234375	2	619.870028	1237.7255	0.32312	0.00020029	-0.75074	-0.00046536	-0.42762	-0.00026507	619.8684087462731	93.756	0.61766	93.755	93.414	94.031	-0.00051117					65	45	2	0	0	0	0.44828	1	24933	24933		4.897	0	1	186880	+		39978	21438	23229	23230	48604	48604					0.11614974819917734
RRGGPIKLNLD	11	Unmodified	_RRGGPIKLNLD_					0	0	0			REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8696899414062	2	619.870028	1237.7255	0.20348	0.00012613	-0.46722	-0.00028961	-0.26374	-0.00016348	619.8692710448544	97.491	1.1283	97.485	96.973	98.101	-0.0055466					232	118	3	0	0	0	0.44828	2	26177	26161;26177		4.897	1.6157	1	379940	+		39979	21438	23229	23230	48605;48606	48606					0.11614974819917734
RRGGPRAF	8	Unmodified	_RRGGPRAF_					0	0	0			REV__ENST00000604081.1_1_12:54388338-54389007:-|nuORF	REV__ENST00000604081.1_1_12:54388338-54389007:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7861022949219	2	458.764835	915.515117	-0.27059	-0.00012414	-1.5122	-0.00069376	-1.7828	-0.0008179	458.76396388643514	12.739	0.26156	12.739	12.612	12.874	0					11	8	2	0	0	0	0.34437	1	184	184		0.69038	0	1	12703	+		39980	22652	23230	23231	48607	48607					0.053979820084123276
RRGKNKERE	9	Unmodified	_RRGKNKERE_					0	0	0		THSD7A|p.I1441Pfs*15|1|0.06|ENSG00000005108|chr7:11401885-11401886|-/GGTGAGGATCTAGGCTTTGG|frameshift_variant;THSD7A|p.Q1442Hfs*31|1|0.06|ENSG00000005108|chr7:11401883-11401884|-/GTGA|frameshift_variant;ENSG00000005108|ENST00000423059|THSD7A	THSD7A|p.I1441Pfs*15|1|0.06|ENSG00000005108|chr7:11401885-11401886|-/GGTGAGGATCTAGGCTTTGG|frameshift_variant	THSD7A|p.I1441Pfs*15|1|0.06|ENSG00000005108|chr7:11401885-11401886|-/GGTGAGGATCTAGGCTTTGG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.833740234375	2	586.833977	1171.6534	0.38011	0.00022306	0.037801	2.2183E-05	0.41792	0.00024525	586.8337621445664	82.16	0.90522	82.16	81.478	82.383	0					104	34	4	0	0	0	0.31417	2	21400	21400;21455		6.7232	6.7232	1	2440700			39981	325	23231	23232	48608;48609	48608					0.07444060466241353
RRGKNKERE	9	Unmodified	_RRGKNKERE_					0	0	0		THSD7A|p.I1441Pfs*15|1|0.06|ENSG00000005108|chr7:11401885-11401886|-/GGTGAGGATCTAGGCTTTGG|frameshift_variant;THSD7A|p.Q1442Hfs*31|1|0.06|ENSG00000005108|chr7:11401883-11401884|-/GTGA|frameshift_variant;ENSG00000005108|ENST00000423059|THSD7A	THSD7A|p.I1441Pfs*15|1|0.06|ENSG00000005108|chr7:11401885-11401886|-/GGTGAGGATCTAGGCTTTGG|frameshift_variant	THSD7A|p.I1441Pfs*15|1|0.06|ENSG00000005108|chr7:11401885-11401886|-/GGTGAGGATCTAGGCTTTGG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8338012695312	2	586.833977	1171.6534	0.49622	0.0002912	-0.35343	-0.0002074	0.1428	8.3798E-05	586.8334936433217	82.598	1.5978	82.598	82.287	83.885	0					115	60	4	0	0	0	0.31417	2	21501	21501;21549		6.7232	2.3939	1	2000400			39982	325	23231	23232	48610;48611	48610					0.07444060466241353
RRGKNKERE	9	Unmodified	_RRGKNKERE_					0	0	0		THSD7A|p.I1441Pfs*15|1|0.06|ENSG00000005108|chr7:11401885-11401886|-/GGTGAGGATCTAGGCTTTGG|frameshift_variant;THSD7A|p.Q1442Hfs*31|1|0.06|ENSG00000005108|chr7:11401883-11401884|-/GTGA|frameshift_variant;ENSG00000005108|ENST00000423059|THSD7A	THSD7A|p.I1441Pfs*15|1|0.06|ENSG00000005108|chr7:11401885-11401886|-/GGTGAGGATCTAGGCTTTGG|frameshift_variant	THSD7A|p.I1441Pfs*15|1|0.06|ENSG00000005108|chr7:11401885-11401886|-/GGTGAGGATCTAGGCTTTGG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.833740234375	2	586.833977	1171.6534	0.28065	0.0001647	0.15006	8.8058E-05	0.43071	0.00025275	586.8338136975857	82.166	2.7659	82.235	81.4	84.166	0.068993					315	113	4	0	0	0	0.31417	1	21451	21451		6.7232	2.3939	1	1932100			39983	325	23231	23232	48612	48612					0.07444060466241353
RRGKNKERE	9	Unmodified	_RRGKNKERE_					0	0	0		THSD7A|p.I1441Pfs*15|1|0.06|ENSG00000005108|chr7:11401885-11401886|-/GGTGAGGATCTAGGCTTTGG|frameshift_variant;THSD7A|p.Q1442Hfs*31|1|0.06|ENSG00000005108|chr7:11401883-11401884|-/GTGA|frameshift_variant;ENSG00000005108|ENST00000423059|THSD7A	THSD7A|p.I1441Pfs*15|1|0.06|ENSG00000005108|chr7:11401885-11401886|-/GGTGAGGATCTAGGCTTTGG|frameshift_variant	THSD7A|p.I1441Pfs*15|1|0.06|ENSG00000005108|chr7:11401885-11401886|-/GGTGAGGATCTAGGCTTTGG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.833984375	2	586.833977	1171.6534	0.47106	0.00027643	-0.14283	-8.3815E-05	0.32823	0.00019262	586.8336725610507	82.287	2.4714	82.266	81.421	83.892	-0.020905					314	102	4	0	0	0	0.31417	6	21328	21328;21377;21426;21520;21612;21708		6.7232	6.7232	1	2694900			39984	325	23231	23232	48613;48614;48615;48616;48617;48618	48613					0.07444060466241353
RRGPIKLGMA	10	Unmodified	_RRGPIKLGMA_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7715454101562	2	549.83186	1097.64917	0.082539	4.5383E-05	-0.081956	-4.5062E-05	0.00058352	3.2084E-07	549.8316935620758	13.907	0.086607	13.841	13.774	13.861	-0.066068					4	2	2	0	0	0	0.32123	1	560	560		1.6526	1.6526	1	9895.4			39985	12590	23232	23233	48619	48619					0.1042487971897117
RRGQVTVGTRS	11	Unmodified	_RRGQVTVGTRS_					0	0	0		ENST00000429947.1_1_2:242824263-242824780:+|nuORF	ENST00000429947.1_1_2:242824263-242824780:+|nuORF	ENST00000429947.1_1_2:242824263-242824780:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.846923828125	2	608.847084	1215.67962	0.60993	0.00037135	-0.31768	-0.00019342	0.29225	0.00017794	608.8469691643318	84.631	1.7943	84.631	84.405	86.2	0					202	67	4	0	0	0	0.44828	1	22257	22257		4.897	0.95262	1	2172800			39986	10457	23233	23234	48620	48620					0.08040329637697141
RRGRPAAGRLH	11	Unmodified	_RRGRPAAGRLH_					0	0	0		ENST00000215904.6_1_22:38054740-38054869:+|nuORF	ENST00000215904.6_1_22:38054740-38054869:+|nuORF	ENST00000215904.6_1_22:38054740-38054869:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.8709106445312	2	623.871228	1245.7279	0.24472	0.00015268	-0.49458	-0.00030856	-0.24986	-0.00015588	623.8705861664656	95.736	0.57146	95.732	95.519	96.091	-0.0038223					84	51	2	0	0	0	0.46277	1	25575	25575		2.9952	0	1	188630			39987	8807	23234	23235	48621	48621					0.11486868068254807
RRGRQRRFA	9	Unmodified	_RRGRQRRFA_					0	0	0			REV__ENSG00000160957|ENST00000617875|RECQL4	REV__ENSG00000160957|ENST00000617875|RECQL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.858154296875	2	601.858121	1201.70169	0.4408	0.0002653	-0.36663	-0.00022066	0.074167	4.4638E-05	601.8575114925554	94.123	0.62679	94.209	93.904	94.531	0.08667					97	50	3	0	0	0	0.34681	1	25047	25047		1.8442	0	1	226260	+		39988	16927	23235	23236	48622	48622					0.10890598896776282
RRGRQRRFA	9	Unmodified	_RRGRQRRFA_					0	0	0			REV__ENSG00000160957|ENST00000617875|RECQL4	REV__ENSG00000160957|ENST00000617875|RECQL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.8575439453125	2	601.858121	1201.70169	0.46856	0.000282	-0.62556	-0.0003765	-0.15701	-9.4497E-05	601.8574658214237	94.177	0.62511	94.177	93.908	94.534	-0.00051117					94	46	3	0	0	0	0.34681	1	25151	25151		1.8442	0	1	353080	+		39989	16927	23235	23236	48623	48623					0.10890598896776282
RRGRRKKEVN	10	Unmodified	_RRGRRKKEVN_					0	0	0		AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000420969.1_1_2:162357792-162360000:-|nuORF	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8977661132812	2	649.897443	1297.78033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.808	1	93.808	93.308	94.308	-0.00051117								0	0	0	0.38196	1	24995	24995		0	0	1				39990	22	23236	23237	48624	48624					0.14335406411214535
RRGRRPRSEL	10	Unmodified	_RRGRRPRSEL_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;ENST00000480022.1_1_20:40033235-40042188:-|nuORF	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8822021484375	2	641.881793	1281.74903	0.56708	0.000364	0.58535	0.00037573	1.1524	0.00073972	641.8818305239422	94.612	0.49771	94.61	94.559	95.057	-0.0020142					74	42	2	0	0	0	0.41085	1	25232	25232		1.4819	0	1	151090			39991	3137	23237	23238	48625	48625					0.11942833377133866
RRGRRQVE	8	Unmodified	_RRGRRQVE_					0	0	0		ENST00000196061.4_1_1:12009854-12009905:+|nuORF	ENST00000196061.4_1_1:12009854-12009905:+|nuORF	ENST00000196061.4_1_1:12009854-12009905:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2785034179688	2	528.810305	1055.60606	0.051453	2.7209E-05	1.7463	0.00092344	1.7977	0.00095065	528.8112302454208	12.629	0.23291	12.562	12.377	12.61	-0.067496					10	7	2	0	0	0	0.34414	1	190	190		2.0598	0	1	33375			39992	8794	23238	23239	48626	48626					0.08047825985886448
RRGRRRRP	8	Unmodified	_RRGRRRRP_					0	0	0		ENST00000342854.9_2_5:133450446-133450680:+|nuORF	ENST00000342854.9_2_5:133450446-133450680:+|nuORF	ENST00000342854.9_2_5:133450446-133450680:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.353515625	2	555.353006	1108.69146	0.098929	5.494E-05	0.8824	0.00049004	0.98132	0.00054498	555.3534551826275	112.04	0.33105	112.02	111.88	112.21	-0.015625					55	40	2	0	0	0	0.45942	1	29171	29171		2.5775	0	1	73324			39993	9534	23239	23240	48627	48627					0.14146035962198766
RRGSGRQAQL	10	Unmodified	_RRGSGRQAQL_					0	0	0			REV__ENST00000538503.5_1_12:121878388-121880774:-|nuORF	REV__ENST00000538503.5_1_12:121878388-121880774:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.821044921875	2	564.82087	1127.62719	0.22359	0.00012629	0.78999	0.0004462	1.0136	0.00057249	564.8211302096843	80.39	3.1163	80.455	79.422	82.538	0.065102					326	132	3	0	0	0	0.40106	1	21294	21294		3.2813	3.2813	1	2016200	+		39994	22102	23240	23241	48628	48628					0.06847791294762828
RRGSPARFV	9	Unmodified	_RRGSPARFV_					0	0	0		ENST00000341983.8_1_19:47725000-47735852:-|nuORF	ENST00000341983.8_1_19:47725000-47735852:-|nuORF	ENST00000341983.8_1_19:47725000-47735852:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3040771484375	2	523.304324	1044.5941	0.66453	0.00034775	-1.9279	-0.0010089	-1.2634	-0.00066113	523.3034222608641	84.381	0.41903	84.364	84.181	84.6	-0.01683					31	17	2	0	0	0	0.33276	1	22070	22070		3.9444	3.9444	1	103070			39995	9527	23241	23242	48629	48629					0.07358209242693192
RRGWLKSLIH	10	Unmodified	_RRGWLKSLIH_					0	0	0			REV__ENST00000587091.5_2_X:73751613-73751946:+|nuORF	REV__ENST00000587091.5_2_X:73751613-73751946:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3681030273438	2	633.383106	1264.75166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.85	1	105.85	105.35	106.35	-0.0027847								0	0	0	0.37807	1	28027	28027		2.9952	0	1		+		39996	22529	23242	23243	48630	48630					0.12987288782096584
RRHGRLPWA	9	Unmodified	_RRHGRLPWA_					0	0	0		nc|ENSG00000099998|P36269-3|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-3|GGT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.27783203125	2	574.83104	1147.64753	-0.16071	-9.2383E-05	1.6571	0.00095254	1.4964	0.00086015	574.832248031557	13.246	0.20208	13.179	13.073	13.275	-0.067495					13	6	3	0	0	0	0.26251	1	354	354		0	0	1	44334			39997	1513	23243	23244	48631	48631					0.07961006745222221
RRHHIVSAS	9	Unmodified	_RRHHIVSAS_					0	0	0		ENST00000591330.5_1_17:40855746-40879722:-|nuORF;ENST00000585550.5_1_17:40855746-40872302:-|nuORF;nc|ENSG00000108799|Q92800-5|EZH1;ENST00000585912.5_1_17:40855746-40880959:-|nuORF;nc|ENSG00000108799|Q92800-4|EZH1;ENST00000586103.5_1_17:40855746-40880959:-|nuORF;nc|ENSG00000108799|Q92800-3|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-2|EZH1	ENST00000591330.5_1_17:40855746-40879722:-|nuORF	ENST00000591330.5_1_17:40855746-40879722:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8172607421875	2	531.799406	1061.58426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.126	1	77.182	76.682	77.682	0.055412								0	0	0	0.21009	1	19884	19884		19.257	4.8516	1				39998	12180	23244	23245	48632	48632					0.05593021237314133
RRHLELSKSL	10	Unmodified	_RRHLELSKSL_					0	0	0			REV__nc|ENSG00000126217|O15068-5|MCF2L	REV__nc|ENSG00000126217|O15068-5|MCF2L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8695678710938	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.348	1	99.348	98.848	99.848	0								0	0	0	0.37739	1	26578	26578		3.2813	0	1		+		39999	15303	23245	23246	48633	48633					0.11614974819917734
RRHLELSKSL	10	Unmodified	_RRHLELSKSL_					0	0	0			REV__nc|ENSG00000126217|O15068-5|MCF2L	REV__nc|ENSG00000126217|O15068-5|MCF2L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8696899414062	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.388	1	99.388	98.888	99.888	0								0	0	0	0.37807	1	26589	26589		2.9952	1.151	1		+		40000	15303	23245	23246	48634	48634					0.11614974819917734
RRHLELSKSL	10	Unmodified	_RRHLELSKSL_					0	0	0			REV__nc|ENSG00000126217|O15068-5|MCF2L	REV__nc|ENSG00000126217|O15068-5|MCF2L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8681030273438	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.398	1	99.449	98.949	99.949	0.050888								0	0	0	0.37157	1	26592	26592		5.7319	2.1354	1		+		40001	15303	23245	23246	48635	48635					0.11614974819917734
RRHLELSKSL	10	Unmodified	_RRHLELSKSL_					0	0	0			REV__nc|ENSG00000126217|O15068-5|MCF2L	REV__nc|ENSG00000126217|O15068-5|MCF2L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8693237304688	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.412	1	99.463	98.963	99.963	0.050888								0	0	0	0.37157	1	26595	26595		5.7319	1.203	1		+		40002	15303	23245	23246	48636	48636					0.11614974819917734
RRHLELSKSL	10	Unmodified	_RRHLELSKSL_					0	0	0			REV__nc|ENSG00000126217|O15068-5|MCF2L	REV__nc|ENSG00000126217|O15068-5|MCF2L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8695068359375	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.522	1	99.573	99.073	100.07	0.050888								0	0	0	0.37807	1	26621	26621		2.9952	1.151	1		+		40003	15303	23245	23246	48637	48637					0.11614974819917734
RRHLELSKSL	10	Unmodified	_RRHLELSKSL_					0	0	0			REV__nc|ENSG00000126217|O15068-5|MCF2L	REV__nc|ENSG00000126217|O15068-5|MCF2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8685302734375	2	619.870028	1237.7255	0.15071	9.3423E-05	-1.4032	-0.00086978	-1.2524	-0.00077635	619.8691523294976	99.566	0.53395	99.559	99.358	99.892	-0.006897					120	68	2	0	0	0	0.38773	4	26670	26659;26670;26682;26702		5.7319	2.1354	1	135490	+		40004	15303	23245	23246	48638;48639;48640;48641	48639					0.11614974819917734
RRHLELSKSL	10	Unmodified	_RRHLELSKSL_					0	0	0			REV__nc|ENSG00000126217|O15068-5|MCF2L	REV__nc|ENSG00000126217|O15068-5|MCF2L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8682250976562	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.411	1	99.404	98.904	99.904	-0.006897								0	0	0	0.37807	1	26627	26627		2.9952	0	1		+		40005	15303	23245	23246	48642	48642					0.11614974819917734
RRHRRNKQ	8	Unmodified	_RRHRRNKQ_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8430786132812	2	575.842471	1149.67039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.68	1	115.7	115.2	116.2	0.018738								0	0	0	0.38004	1	30042	30042		0.69038	0	1		+		40006	19116	23246	23247	48643	48643					0.10154025862675553
RRHRRNKQ	8	Unmodified	_RRHRRNKQ_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8428344726562	2	575.842471	1149.67039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.92	1	117.94	117.44	118.44	0.023476								0	0	0	0.38004	1	30553	30553		0.69038	0	1		+		40007	19116	23246	23247	48644	48644					0.10154025862675553
RRIQVPQDSL	10	Unmodified	_RRIQVPQDSL_					0	0	0		ENSG00000223510|ENST00000420162|CDRT15	ENSG00000223510|ENST00000420162|CDRT15	ENSG00000223510|ENST00000420162|CDRT15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.5665588378906	3	404.566683	1210.67822	-0.34756	-0.00014061	0.71034	0.00028738	0.36278	0.00014677	404.5669521190346	29.782	0.69991	29.795	29.507	30.207	0.013474					71	23	4	0	0	0	0.3258	1	5419	5419		10.899	0	1	444190			40008	8436	23247	23248	48645	48645					0.0813069554892536
RRITKIFVRIF	11	Unmodified	_RRITKIFVRIF_					0	0	0			REV__ENSG00000167114|ENST00000300456|SLC27A4	REV__ENSG00000167114|ENST00000300456|SLC27A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2763366699219	3	483.645267	1447.91397	0.22289	0.0001078	2.573	0.0012444	2.7959	0.0013522	483.6463879247508	59.182	0.11018	59.274	59.211	59.321	0.091301					5	3	2	0	0	0	0.33351	1	14380	14380		0.094841	0	1	103820	+		40009	17364	23248	23249	48646	48646					0.2079325246420467
RRIWELLDS	9	Unmodified	_RRIWELLDS_					0	0	0			REV__ENST00000588618.5_1_19:39138385-39212431:+|nuORF	REV__ENST00000588618.5_1_19:39138385-39212431:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.3309936523438	2	594.330205	1186.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.92	1	80.985	80.485	81.485	0.065094								0	0	0	0.24715	1	21044	21044		7.2892	3.3448	1		+		40010	13076	23249	23250	48647	48647					0.059999081459409354
RRKALCKRKS	10	Unmodified	_RRKALCKRKS_					0	0	0		nc|ENSG00000061938|Q07912|TNK2;nc|ENSG00000061938|Q07912-3|TNK2;ENSG00000061938|ENST00000672887|TNK2;ENST00000468819.1_1_3:195606029-195638730:-|nuORF;ENST00000464041.5_1_3:195605455-195619614:-|nuORF;nc|ENSG00000061938|Q07912-2|TNK2	nc|ENSG00000061938|Q07912|TNK2	nc|ENSG00000061938|Q07912|TNK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.3902587890625	2	623.387865	1244.76118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.21	1	103.21	102.71	103.71	0.0082703								0	0	0	0.38198	1	27437	27437		1.4819	0	1				40011	763	23250	23251	48648	48648					0.14858733795927037
RRKALCKRKS	10	Unmodified	_RRKALCKRKS_					0	0	0		nc|ENSG00000061938|Q07912|TNK2;nc|ENSG00000061938|Q07912-3|TNK2;ENSG00000061938|ENST00000672887|TNK2;ENST00000468819.1_1_3:195606029-195638730:-|nuORF;ENST00000464041.5_1_3:195605455-195619614:-|nuORF;nc|ENSG00000061938|Q07912-2|TNK2	nc|ENSG00000061938|Q07912|TNK2	nc|ENSG00000061938|Q07912|TNK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.3903198242188	2	623.387865	1244.76118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.08	1	103.08	102.58	103.58	-0.0011139								0	0	0	0.38198	1	27434	27434		1.4819	0	1				40012	763	23250	23251	48649	48649					0.14858733795927037
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3271484375	2	577.327465	1152.64038	0.085846	4.9562E-05	0.047819	2.7607E-05	0.13366	7.7168E-05	577.3274339566533	31.119	0.74502	31.119	30.838	31.583	0					67	26	3	0	0	0	0.0028542	3	5755	5755;5801;5851		103.42	70.634	1	696340			40013	3223	23251	23252	48650;48651;48652	48650					0.07016229354144343
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3275146484375	2	577.327465	1152.64038	0.07481	4.319E-05	0.27869	0.00016089	0.3535	0.00020408	577.3275811491438	31.135	0.717	31.166	30.872	31.589	0.031719					59	25	3	0	0	0	0.0054984	2	5811	5756;5811		86.332	60.064	1	739540			40014	3223	23251	23252	48653;48654	48654					0.07016229354144343
RRKDGVFLY	9	Unmodified	_RRKDGVFLY_					0	0	0		ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3275146484375	2	577.327465	1152.64038	0.18673	0.0001078	0.19083	0.00011017	0.37755	0.00021797	577.3274965327288	31.094	0.6799	31.133	30.905	31.585	0.039085					62	24	3	0	0	0	0.0028542	2	5788	5740;5788		103.42	77.151	1	825890			40015	3223	23251	23252	48655;48656	48656					0.07016229354144343
RRKEPAFSK	9	Unmodified	_RRKEPAFSK_					0	0	0		ENST00000369258.8_1_1:146727496-146727541:+|nuORF	ENST00000369258.8_1_1:146727496-146727541:+|nuORF	ENST00000369258.8_1_1:146727496-146727541:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.3140869140625	2	559.825089	1117.63563	-0.03946	-2.2091E-05	0.049876	2.7922E-05	0.010416	5.8312E-06	559.8251486551835	13.422	0.31466	13.422	13.282	13.597	0					20	9	3	0	0	0	0.26204	1	387	387		1.4819	0.15237	1	84496			40016	9777	23252	23253	48657	48657					0.08151345211376793
RRKGLTPFT	9	Unmodified	_RRKGLTPFT_					0	0	0		nc|ENSG00000146054|Q9C029-3|TRIM7;nc|ENSG00000146054|Q9C029-4|TRIM7;ENSG00000146054|ENST00000274773|TRIM7;ENST00000504241.1_1_5:180622168-180622936:-|nuORF	nc|ENSG00000146054|Q9C029-3|TRIM7	nc|ENSG00000146054|Q9C029-3|TRIM7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8154296875	2	538.322183	1074.62981	0.089871	4.838E-05	1.0031	0.00054	1.093	0.00058838	538.3224178528989	12.957	0.31331	12.857	12.729	13.042	-0.099291					14	10	2	0	0	0	0.26168	1	306	306		1.8442	0	1	69186			40017	4685	23253	23254	48658	48658					0.09548246699705487
RRKKRRQREHL	11	Unmodified	_RRKKRRQREHL_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.6574096679688	3	521.657341	1561.95019	0.42944	0.00022402	-0.060321	-3.1467E-05	0.36912	0.00019255	521.6572401373753	49.477	2.1611	49.521	49.266	51.427	0.044888					220	80	5	0	0	0	0.48495	1	11477	11477		0.08335	0.08335	1	5425700			40018	5071	23254	23255	48659	48659					0.19169522413631057
RRKKRRQREHL	11	Unmodified	_RRKKRRQREHL_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.6572875976562	3	521.657341	1561.95019	0.39151	0.00020423	0.0021738	1.134E-06	0.39368	0.00020537	521.6572893129421	49.544	1.7781	49.576	49.209	50.987	0.032043					204	65	5	0	0	0	0.48212	2	11517	11466;11517		0.45452	0.37117	1	5055900			40019	5071	23254	23255	48660;48661	48661					0.19169522413631057
RRKLHQRNKRQ	11	Unmodified	_RRKLHQRNKRQ_					0	0	0		ENST00000459737.5_1_14:56079280-56084690:+|nuORF;KTN1|p.T183Lfs*41|1|0.58|ENSG00000126777|chr14:55616538-55616538|A/-|frameshift_variant	ENST00000459737.5_1_14:56079280-56084690:+|nuORF	ENST00000459737.5_1_14:56079280-56084690:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.3097229003906	3	507.309941	1518.90799	0.13199	6.6961E-05	-0.14482	-7.3469E-05	-0.012829	-6.5082E-06	507.30971754654917	95.028	2.2422	95.028	94.003	96.245	0					500	210	4	0	0	0	0.48247	1	25449	25449		0.40827	0.31342	1	1050700			40020	10714	23255	23256	48662	48662					0.16929547005247514
RRKLHQRNKRQ	11	Unmodified	_RRKLHQRNKRQ_					0	0	0		ENST00000459737.5_1_14:56079280-56084690:+|nuORF;KTN1|p.T183Lfs*41|1|0.58|ENSG00000126777|chr14:55616538-55616538|A/-|frameshift_variant	ENST00000459737.5_1_14:56079280-56084690:+|nuORF	ENST00000459737.5_1_14:56079280-56084690:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.31011962890625	3	507.309941	1518.90799	0.20652	0.00010477	-0.040967	-2.0783E-05	0.16556	8.3989E-05	507.3097968971451	94.704	0.93582	94.787	94.107	95.043	0.082779					316	76	5	0	0	0	0.48495	1	25236	25236		0.08335	0.08335	1	3501800			40021	10714	23255	23256	48663	48663					0.16929547005247514
RRKLHQRNKRQ	11	Unmodified	_RRKLHQRNKRQ_					0	0	0		ENST00000459737.5_1_14:56079280-56084690:+|nuORF;KTN1|p.T183Lfs*41|1|0.58|ENSG00000126777|chr14:55616538-55616538|A/-|frameshift_variant	ENST00000459737.5_1_14:56079280-56084690:+|nuORF	ENST00000459737.5_1_14:56079280-56084690:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.3099060058594	3	507.309941	1518.90799	0.18522	9.3963E-05	-0.0203	-1.0299E-05	0.16492	8.3664E-05	507.3098038177049	95.171	1.5453	95.254	94.991	96.536	0.082779					453	142	5	0	0	0	0.48495	3	25426	25426;25463;25502		0.08335	0.08335	1	2569200			40022	10714	23255	23256	48664;48665;48666	48664					0.16929547005247514
RRKLLTEV	8	Unmodified	_RRKLLTEV_					0	0	0		ENSG00000197299|ENST00000355112|BLM	ENSG00000197299|ENST00000355112|BLM	ENSG00000197299|ENST00000355112|BLM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.28729248046875	2	507.824558	1013.63456	0.39799	0.00020211	0.16324	8.2897E-05	0.56123	0.00028501	507.82443529405936	64.774	0.36891	64.774	64.591	64.96	0					21	13	2	0	0	0	0.34092	1	16128	16128		13.508	0	1	114860			40023	7951	23256	23257	48667	48667					0.12829130842476388
RRKLSVKTSH	10	Unmodified	_RRKLSVKTSH_					0	0	0			REV__ENST00000502001.2_1_5:8460214-8460322:+|nuORF	REV__ENST00000502001.2_1_5:8460214-8460322:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3712768554688	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.32	1	114.34	113.84	114.84	0.016708								0	0	0	0.38198	1	29731	29731		1.4819	0	1		+		40024	21710	23257	23258	48668	48668					0.12890394539795125
RRKLVWDA	8	Unmodified	_RRKLVWDA_					0	0	0		ENST00000320246.9_1_9:127020253-127064229:+|nuORF;ENST00000373600.7_1_9:127020253-127055187:+|nuORF	ENST00000320246.9_1_9:127020253-127064229:+|nuORF	ENST00000320246.9_1_9:127020253-127064229:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7528686523438	2	522.309075	1042.6036	0.51833	0.00027073	-1.5535	-0.00081143	-1.0352	-0.0005407	522.3080057829517	57.051	0.41721	57.032	56.809	57.227	-0.019077					20	14	2	0	0	0	0.34092	1	13684	13684		13.508	8.2772	1	218110			40025	9376	23258	23259	48669	48669					0.08399977528233649
RRKRAEQLR	9	Unmodified	_RRKRAEQLR_					0	0	0		ENSG00000131437|ENST00000403231|KIF3A;nc|ENSG00000131437|Q9Y496|KIF3A;ENST00000487055.1_1_5:132036305-132039285:-|nuORF	ENSG00000131437|ENST00000403231|KIF3A	ENSG00000131437|ENST00000403231|KIF3A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.871826171875	2	606.873437	1211.73232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.3	1	117.33	116.83	117.83	0.023476								0	0	0	0.26734	1	30412	30412		0.45834	0	1				40026	3565	23259	23260	48670	48670					0.13492332491159686
RRKRARRPAS	10	Unmodified	_RRKRARRPAS_					0	0	0			REV__ENST00000513346.5_1_5:149743686-149747418:+|nuORF	REV__ENST00000513346.5_1_5:149743686-149747418:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.3828735351562	2	627.392328	1252.7701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.36	1	103.35	102.85	103.85	-0.0011139								0	0	0	0.37157	1	27499	27499		5.7319	0	1		+		40027	21823	23260	23261	48671	48671					0.15382843476663766
RRKRERAERDS	11	Unmodified	_RRKRERAERDS_					0	0	0			REV__nc|ENSG00000145014|Q2T9K0-4|TMEM44	REV__nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.9589538574219	3	486.938061	1457.79235	0.24596	0.00011977	1.0056	0.00048968	1.2516	0.00060945	487.27319956744356	92.587	0.3709	92.676	92.45	92.821	0.089195					35	24	2	0	0	0	0.3325	1	24668	24668		4.1166	2.9018	1	84108	+		40028	16273	23261	23262	48672	48672					0.08176978363735543
RRKRLRHRGR	10	Unmodified	_RRKRLRHRGR_					0	0	0		nc|ENSG00000088053|Q9HCN6-2|GP6;nc|ENSG00000088053|Q9HCN6|GP6	nc|ENSG00000088053|Q9HCN6-2|GP6	nc|ENSG00000088053|Q9HCN6-2|GP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.2994079589844	3	464.299488	1389.87663	-0.20059	-9.3134E-05	0.30443	0.00014135	0.10384	4.8212E-05	464.2997209995276	100.02	0.60599	100.06	99.836	100.44	0.038994					240	80	4	0	0	0	0.40854	1	26740	26740		1.9064	1.9064	1	1386300			40029	12601	23262	23263	48673	48673					0.19729018761813677
RRKRLRHRGR	10	Unmodified	_RRKRLRHRGR_					0	0	0		nc|ENSG00000088053|Q9HCN6-2|GP6;nc|ENSG00000088053|Q9HCN6|GP6	nc|ENSG00000088053|Q9HCN6-2|GP6	nc|ENSG00000088053|Q9HCN6-2|GP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.6337585449219	3	464.299488	1389.87663	0.13833	6.4224E-05	0.056548	2.6255E-05	0.19487	9.048E-05	464.29962873186713	100.21	0.91074	100.2	99.852	100.76	-0.0069046					351	125	4	0	0	0	0.40854	1	26859	26859		1.9064	1.9064	1	1150400			40030	12601	23262	23263	48674	48674					0.19729018761813677
RRKRVPHI	8	Unmodified	_RRKRVPHI_					0	0	0			REV__ENST00000361725.4_1_2:172952933-172953254:+|nuORF	REV__ENST00000361725.4_1_2:172952933-172953254:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3436279296875	2	531.343784	1060.67301	0.069702	3.7036E-05	-0.045696	-2.428E-05	0.024006	1.2755E-05	531.343682679571	12.747	0.43387	12.648	12.49	12.924	-0.099291					32	14	3	0	0	0	0.344	1	228	228		2.5775	0	1	92221	+		40031	20286	23263	23264	48675	48675					0.14510481267643627
RRKTMRYT	8	Unmodified	_RRKTMRYT_					0	0	0			REV__ENST00000446662.5_1_16:22466144-22470768:+|nuORF	REV__ENST00000446662.5_1_16:22466144-22470768:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2969360351562	2	556.311292	1110.60803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.99	1	100.99	100.49	101.49	0								0	0	0	0.37183	1	26946	26946		4.756	0.42677	1		+		40032	21082	23264	23265	48676	48676					0.0571511867949539
RRLARRLGSQ	10	Unmodified	_RRLARRLGSQ_					0	0	0		ENSG00000262179|ENST00000573382|MYMX	ENSG00000262179|ENST00000573382|MYMX	ENSG00000262179|ENST00000573382|MYMX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3705444335938	2	606.873437	1211.73232	0.48482	0.00029423	3.8762	0.0023524	4.361	0.0026466	607.379017979653	91.74	0.38225	91.741	91.465	91.848	0.00046539					47	26	3	0	0	0	0.32146	1	24347	24347		1.1933	0	1	199530			40033	8666	23265	23266	48677	48677					0.13492332491182424
RRLARRLGSQ	10	Unmodified	_RRLARRLGSQ_					0	0	0		ENSG00000262179|ENST00000573382|MYMX	ENSG00000262179|ENST00000573382|MYMX	ENSG00000262179|ENST00000573382|MYMX	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	606.873437	1211.73232	0.48332	0.00029331	0.94744	0.00057498	1.4308	0.00086829	606.8722158812105	91.546	0.23608	91.637	91.556	91.792	0.090668	-0.052021	-0.0021434	NaN	1.1933	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131510			40034	8666	23265	23266							0.13492332491182424
RRLDREQLCR	10	Unmodified	_RRLDREQLCR_					0	0	0		ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	ENSG00000113555|ENST00000231484|PCDH12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.77764892578125	3	448.914088	1343.72043	0.12271	5.5086E-05	-0.90546	-0.00040647	-0.78275	-0.00035139	448.91348451648975	33.179	0.57985	33.234	32.985	33.565	0.054375					44	20	3	0	0	0	0.31899	1	6373	6373		7.4771	1.6089	1	221150			40035	2511	23266	23267	48678	48678					0.06232347685681816
RRLEHQKKQEK	11	Unmodified	_RRLEHQKKQEK_					0	0	0		nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.95501708984375	3	493.954941	1478.84299	0.24715	0.00012208	-0.02156	-1.065E-05	0.22559	0.00011143	493.9548865834138	26.15	0.62829	26.15	25.9	26.528	0					58	21	4	0	0	0	0.47786	1	4327	4327		1.0136	0.55906	1	424120			40036	1640	23267	23268	48679	48679					0.12272507688726364
RRLETVFK	8	Unmodified	_RRLETVFK_					0	0	0			REV__nc|ENSG00000131620|Q5XXA6-2|ANO1	REV__nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2904052734375	2	524.816733	1047.61891	0.1169	6.1349E-05	-3.4293	-0.0017998	-3.3124	-0.0017384	524.8145035223575	13.453	0.24671	13.385	13.302	13.549	-0.067496					11	8	2	0	0	0	0.34367	1	445	445		4.3292	0	1	21309	+		40037	15525	23268	23269	48680	48680					0.09700844325402613
RRLKLALLVTV	11	Unmodified	_RRLKLALLVTV_					0	0	0			REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8825073242188	2	641.440089	1280.86563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.32	1	109.33	108.83	109.83	0.0083618								0	0	0	0.37382	1	28659	28659		2.9952	1.5133	1		+		40038	19289	23269	23270	48681	48681					0.23642758824280463
RRLKSLHE	8	Unmodified	_RRLKSLHE_					0	0	0		nc|ENSG00000141577|Q9UPN4-3|CEP131;ENSG00000141577|ENST00000450824|CEP131;nc|ENSG00000141577|Q9UPN4|CEP131	nc|ENSG00000141577|Q9UPN4-3|CEP131	nc|ENSG00000141577|Q9UPN4-3|CEP131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2763061523438	2	519.811982	1037.60941	0.68184	0.00035443	-0.043462	-2.2592E-05	0.63838	0.00033184	519.812986737262	83.699	0.80872	83.699	83.123	83.932	0					43	30	2	0	0	0	0.344	1	21828	21828		2.5775	0	1	251750			40039	4398	23270	23271	48682	48682					0.09211076039900945
RRLLIIGYIF	10	Unmodified	_RRLLIIGYIF_					0	0	0		ENST00000520664.1_1_5:159845875-159845974:-|nuORF	ENST00000520664.1_1_5:159845875-159845974:-|nuORF	ENST00000520664.1_1_5:159845875-159845974:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.59246826171875	3	421.936047	1262.78631	0.2168	9.1477E-05	-1.4144	-0.00059678	-1.1976	-0.0005053	421.9347677883001	48.326	0.65646	48.37	48.065	48.721	0.04332					45	24	3	0	0	0	0.39782	1	11089	11089		3.8763	0.28927	1	253810			40040	11478	23271	23272	48683	48683					0.16543111870169014
RRLLLPHT	8	Unmodified	_RRLLLPHT_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.79437255859375	2	503.319443	1004.62433	0.45997	0.00023151	0.56895	0.00028636	1.0289	0.00051787	503.32119964129527	90.485	0.087311	90.485	90.436	90.524	0.00039673					7	5	2	0	0	0	0.344	1	23983	23983		2.5775	0	1	32453	+		40041	17741	23272	23273	48684	48684					0.12220567907888835
RRLLQALERG	10	Unmodified	_RRLLQALERG_					0	0	0		ENST00000487177.5_1_1:1022889-1023015:-|nuORF	ENST00000487177.5_1_1:1022889-1023015:-|nuORF	ENST00000487177.5_1_1:1022889-1023015:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.372314453125	2	606.370195	1210.72584	0.061617	3.7362E-05	0.25428	0.00015419	0.3159	0.00019155	606.3701678018867	111.58	0.54704	111.58	111.46	112.01	0					115	69	2	0	0	0	0.41585	1	29008	29008		1.3295	0.80477	1	142490			40042	11115	23273	23274	48685	48685					0.12890394539772387
RRLLVISAP	9	Unmodified	_RRLLVISAP_					0	0	0		ENSG00000091986|ENST00000206423|CCDC80;nc|ENSG00000091986|Q76M96-2|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2430419921875	2	512.834926	1023.6553	0.37524	0.00019244	-0.1188	-6.0926E-05	0.25644	0.00013151	512.8347407753383	31.879	0.86902	31.921	31.652	32.521	0.042364					59	30	3	0	0	0	0.25879	1	5937	5937		4.756	0	1	1238900			40043	1412	23274	23275	48686	48686					0.14441721222124215
RRLLVISAP	9	Unmodified	_RRLLVISAP_					0	0	0		ENSG00000091986|ENST00000206423|CCDC80;nc|ENSG00000091986|Q76M96-2|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	512.834926	1023.6553	0.38678	0.00019836	-0.0028887	-1.4814E-06	0.3839	0.00019688	512.8347036213336	31.959	0.80555	31.959	31.694	32.5	0	0.029201	1.9921E-05	NaN	4.756	58	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1258400			40044	1412	23274	23275							0.14441721222124215
RRLLVISAP	9	Unmodified	_RRLLVISAP_					0	0	0		ENSG00000091986|ENST00000206423|CCDC80;nc|ENSG00000091986|Q76M96-2|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	512.834926	1023.6553	0.25346	0.00012998	0.14109	7.2355E-05	0.39454	0.00020234	512.8348353287138	31.868	0.80795	31.909	31.62	32.428	0.040991	-0.020607	0.00016759	NaN	4.756	63	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1001700			40045	1412	23274	23275							0.14441721222124215
RRLNPLLNQK	10	Unmodified	_RRLNPLLNQK_					0	0	0		ENST00000460472.6_3_2:179604374-179604491:-|nuORF	ENST00000460472.6_3_2:179604374-179604491:-|nuORF	ENST00000460472.6_3_2:179604374-179604491:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.3898315429688	2	626.385845	1250.75714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.37	1	104.37	103.87	104.87	0.0011444								0	0	0	0.38126	1	27743	27743		1.6526	0.17072	1				40046	10730	23275	23276	48687	48687					0.14178967573889167
RRLRNQLEK	9	Unmodified	_RRLRNQLEK_					0	0	0			REV__nc|ENSG00000101191|Q9BTC0-1|DIDO1	REV__nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2471618652344	3	404.914305	1211.72109	-0.32349	-0.00013099	0.27296	0.00011052	-0.050533	-2.0462E-05	404.9156043489178	17.045	2.2834	16.928	16.272	18.556	-0.11739					237	80	4	0	0	0	0.24247	1	1415	1415		17.443	3.0373	1	1148700	+		40047	14253	23276	23277	48688	48688					0.12369510397002159
RRLRRRWFRTH	11	Unmodified	_RRLRRRWFRTH_					0	0	0		ENST00000574110.5_1_19:30433210-30433438:+|nuORF	ENST00000574110.5_1_19:30433210-30433438:+|nuORF	ENST00000574110.5_1_19:30433210-30433438:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.8522644042969	4	410.746179	1638.95561	-0.3862	-0.00015863	-0.53255	-0.00021874	-0.91875	-0.00037737	410.7460297790023	13.398	0.23034	13.398	13.227	13.457	0					13	7	2	0	0	0	0.33351	1	396	396		0.094841	0.094841	1	29476			40048	12036	23277	23278	48689	48689					0.16169245996093196
RRLRRRWFRTH	11	Unmodified	_RRLRRRWFRTH_					0	0	0		ENST00000574110.5_1_19:30433210-30433438:+|nuORF	ENST00000574110.5_1_19:30433210-30433438:+|nuORF	ENST00000574110.5_1_19:30433210-30433438:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.85235595703125	4	410.746179	1638.95561	-0.26516	-0.00010891	-4.2276	-0.0017365	-4.4928	-0.0018454	410.74419786089436	13.445	0.38435	13.377	13.275	13.66	-0.067496					22	13	3	0	0	0	0.33351	1	424	424		0.094841	0.094841	1	30994			40049	12036	23277	23278	48690	48690					0.16169245996093196
RRLRWYFF	8	Unmodified	_RRLRWYFF_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8410034179688	2	622.345992	1242.67743	0.37027	0.00023043	1.5512	0.00096539	1.9215	0.0011958	622.3469704547435	83.065	0.49976	83.045	82.842	83.342	-0.020584					30	19	2	0	0	0	0.34313	1	21785	21785		5.2307	2.2354	1	126630	+		40050	19349	23278	23279	48691	48691					0.0657994569053244
RRLWRWWWKL	10	Unmodified	_RRLWRWWWKL_					0	0	0		chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.6402587890625	3	529.305357	1584.89424	0.19383	0.0001026	0.7795	0.00041259	0.97333	0.00051519	529.3057421456685	111.53	0.2282	111.51	111.45	111.68	-0.013939					52	29	2	0	0	0	0.4155	1	29043	29043		0.62683	0.62683	1	371580			40051	133	23279	23280	48692	48692					0.1251892124407732
RRLWRWWWKL	10	Unmodified	_RRLWRWWWKL_					0	0	0		chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.6400756835938	3	529.305357	1584.89424	0.19369	0.00010252	0.50998	0.00026994	0.70367	0.00037246	529.3056057733296	111.75	0.28613	111.74	111.66	111.95	-0.015625					56	32	2	0	0	0	0.41815	1	29075	29075		0.13989	0.13989	1	308920			40052	133	23279	23280	48693	48693					0.1251892124407732
RRLWRWWWKL	10	Unmodified	_RRLWRWWWKL_					0	0	0		chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	529.305357	1584.89424	0.099294	5.2557E-05	0.77863	0.00041213	0.87792	0.00046469	529.3057677962839	111.58	0.68165	111.58	111.34	112.02	0	-0.060983	0.00018586	NaN	0.13989	182	88	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244270			40053	133	23279	23280							0.1251892124407732
RRLYRRRWTAL	11	Unmodified	_RRLYRRRWTAL_					0	0	0			REV__ENSG00000284188|ENST00000640271|unknown	REV__ENSG00000284188|ENST00000640271|unknown	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.9780883789062	3	516.31117	1545.91168	0.17689	9.1329E-05	3.7521	0.0019372	3.929	0.0020286	516.3134636583484	101.58	0.24553	101.57	101.5	101.75	-0.0054703					47	31	2	0	0	0	0.33351	1	27119	27119		0.094841	0.094841	1	211520	+		40054	19373	23280	23281	48694	48694					0.1605621677911131
RRLYSHLAT	9	Unmodified	_RRLYSHLAT_					0	0	0		ENST00000525625.1_1_11:125884983-125893371:-|nuORF;ENSG00000064309|ENST00000531738|CDON;nc|ENSG00000064309|Q4KMG0|CDON	ENST00000525625.1_1_11:125884983-125893371:-|nuORF	ENST00000525625.1_1_11:125884983-125893371:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.81640625	2	558.817264	1115.61998	0.059917	3.3483E-05	-0.81606	-0.00045603	-0.75615	-0.00042255	558.8167345882773	18.006	0.37964	17.946	17.818	18.197	-0.0597					18	13	2	0	0	0	0.34681	1	1837	1837		1.8442	0	1	22640			40055	786	23281	23282	48695	48695					0.06679058694339801
RRMEIMMD	8	Unmodified	_RRMEIMMD_					0	0	0			REV__ENSG00000162782|ENST00000444136|TDRD5	REV__ENSG00000162782|ENST00000444136|TDRD5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.775634765625	2	541.251197	1080.48784	0.30839	0.00016691	-1.1923	-0.00064536	-0.88395	-0.00047844	541.2502810151743	18.542	0.51851	18.425	18.242	18.761	-0.11739					28	17	2	0	0	0	0.34408	1	1971	1971		2.3027	0.4585	1	44595	+		40056	17011	23282	23283	48696	48696					-0.04918373700797929
RRNKVFSLAKK	11	Unmodified	_RRNKVFSLAKK_					0	0	0			REV__ENST00000554208.1_1_14:67708244-67736501:+|nuORF	REV__ENST00000554208.1_1_14:67708244-67736501:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.25115966796875	3	449.617489	1345.83064	0.11931	5.3642E-05	-0.61527	-0.00027664	-0.49596	-0.00022299	449.6171912435254	24.023	0.67031	23.95	23.563	24.234	-0.072559					45	22	3	0	0	0	0.33336	1	3622	3622		1.1098	0.18422	1	64579	+		40057	19599	23283	23284	48697	48697					0.17155516016350703
RRNLTASL	8	Unmodified	_RRNLTASL_					0	0	0			REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.777587890625	2	465.777608	929.540663	0.069502	3.2372E-05	-1.2182	-0.00056741	-1.1487	-0.00053504	465.7775319258724	71.513	3.7412	71.57	70.875	74.617	0.056572					306	134	4	0	0	0	0.44389	1	18530	18530		7.9102	0	1	2579700	+		40058	16658	23284	23285	48698	48698					0.07307411740168845
RRNQFRLEI	9	Unmodified	_RRNQFRLEI_					0	0	0		ENST00000491929.1_1_13:103453071-103457705:+|nuORF	ENST00000491929.1_1_13:103453071-103457705:+|nuORF	ENST00000491929.1_1_13:103453071-103457705:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.9044189453125	3	411.238789	1230.69454	-0.11794	-4.8502E-05	-0.33225	-0.00013663	-0.45019	-0.00018514	411.238475976442	14.581	0.77619	14.477	14.159	14.935	-0.10466					41	26	3	0	0	0	0.26245	1	891	891		0.96228	0.18574	1	55912			40059	11187	23285	23286	48699	48699					0.08841821505734515
RRNRSRRRRFR	11	Unmodified	_RRNRSRRRRFR_					0	0	0		ENST00000481383.1_1_3:180688091-180688984:+|nuORF	ENST00000481383.1_1_3:180688091-180688984:+|nuORF	ENST00000481383.1_1_3:180688091-180688984:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.6626586914062	3	539.328217	1614.96282	0.076797	4.1419E-05	0.51205	0.00027616	0.58884	0.00031758	539.6624779491823	106.26	0.080505	106.26	106.22	106.3	0					12	11	2	0	0	0	0.48558	1	28092	28092		0	0	1	546140			40060	11027	23286	23287	48700	48700					0.179939785965189
RRNRSRRRRFR	11	Unmodified	_RRNRSRRRRFR_					0	0	0		ENST00000481383.1_1_3:180688091-180688984:+|nuORF	ENST00000481383.1_1_3:180688091-180688984:+|nuORF	ENST00000481383.1_1_3:180688091-180688984:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.32861328125	3	539.328217	1614.96282	0.47113	0.00025409	0.6451	0.00034792	1.1162	0.00060201	539.3290643910528	106.27	0.11825	106.28	106.21	106.33	0.0050507					36	16	3	0	0	0	0.48558	1	28140	28140		0	0	1	783670			40061	11027	23286	23287	48701	48701					0.179939785965189
RRNRYRTR	8	Unmodified	_RRNRYRTR_					0	0	0		ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	ENSG00000070366|ENST00000263073|SMG6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3422241210938	2	589.342304	1176.67005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.02	1	118.05	117.55	118.55	0.023476								0	0	0	0.38014	1	30575	30575		0.6015	0	1				40062	921	23287	23288	48702	48702					0.088786061428209
RRPATPGRP	9	Unmodified	_RRPATPGRP_					0	0	0			REV__ENST00000404261.8_1_19:17392973-17394058:+|nuORF	REV__ENST00000404261.8_1_19:17392973-17394058:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.29638671875	2	504.296499	1006.57845	-0.050322	-2.5377E-05	-0.27188	-0.00013711	-0.3222	-0.00016249	504.2964130146864	13.52	0.83625	13.42	13.16	13.997	-0.099291					91	29	4	0	0	0	0.30064	1	524	524		8.7454	0	1	1860300	+		40063	20727	23288	23289	48703	48703					0.0754192272564751
RRPDPAAPS	9	Unmodified	_RRPDPAAPS_					0	0	0		ENST00000600059.5_1_19:48988799-49002658:-|nuORF	ENST00000600059.5_1_19:48988799-49002658:-|nuORF	ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7591247558594	2	483.759415	965.504277	-0.11614	-5.6183E-05	-0.23913	-0.00011568	-0.35527	-0.00017186	483.7593304243741	13.334	0.42025	13.334	13.147	13.567	0					36	14	4	0	0	0	0.31417	1	403	403		6.7232	0	1	104110			40064	12247	23289	23290	48704	48704					0.020145348434652988
RRPDPVSL	8	Unmodified	_RRPDPVSL_					0	0	0			REV__ENST00000291560.6_1_21:45077957-45078116:-|nuORF	REV__ENST00000291560.6_1_21:45077957-45078116:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.272216796875	2	470.272158	938.529764	0.11128	5.2334E-05	0.19073	8.9696E-05	0.30202	0.00014203	470.27219163285827	82.091	1.4972	82.091	81.504	83.001	0					133	56	4	0	0	0	0.44389	1	21503	21503		7.9102	0	1	3749300	+		40065	19757	23290	23291	48705	48705					0.05804009365908769
RRPELRRE	8	Unmodified	_RRPELRRE_					0	0	0		ABCC6|p.R987Lfs*25|1|0.2|ENSG00000091262|chr16:16169681-16169681|C/-|frameshift_variant;ABCC6|p.R1418Gfs*46|1|0.12|ENSG00000091262|chr16:16150729-16150729|G/-|frameshift_variant;ENSG00000091262|ENST00000205557|ABCC6	ABCC6|p.R987Lfs*25|1|0.2|ENSG00000091262|chr16:16169681-16169681|C/-|frameshift_variant	ABCC6|p.R987Lfs*25|1|0.2|ENSG00000091262|chr16:16169681-16169681|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3255615234375	2	556.325788	1110.63702	-0.0080797	-4.4949E-06	-0.25162	-0.00013998	-0.2597	-0.00014448	556.3253942110636	13.996	0.17654	13.996	13.847	14.024	0					11	5	3	0	0	0	0.45431	1	593	593		4.3292	0	1	84852			40066	2	23291	23292	48706	48706					0.0861297930011915
RRPELRRE	8	Unmodified	_RRPELRRE_					0	0	0		ABCC6|p.R987Lfs*25|1|0.2|ENSG00000091262|chr16:16169681-16169681|C/-|frameshift_variant;ABCC6|p.R1418Gfs*46|1|0.12|ENSG00000091262|chr16:16150729-16150729|G/-|frameshift_variant;ENSG00000091262|ENST00000205557|ABCC6	ABCC6|p.R987Lfs*25|1|0.2|ENSG00000091262|chr16:16169681-16169681|C/-|frameshift_variant	ABCC6|p.R987Lfs*25|1|0.2|ENSG00000091262|chr16:16169681-16169681|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	556.325788	1110.63702	-0.097816	-5.4417E-05	-0.28862	-0.00016057	-0.38644	-0.00021498	556.3256005588931	14.057	0.26319	13.991	13.861	14.124	-0.066067	0.0036435	2.6058E-06	NaN	4.3292	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85667			40067	2	23291	23292							0.0861297930011915
RRPIAQWHSL	10	Unmodified	_RRPIAQWHSL_					0	0	0		nc|ENSG00000129990|O00445-2|SYT5;ENSG00000129990|ENST00000354308|SYT5;ENSG00000143858|ENST00000367268|SYT2	nc|ENSG00000129990|O00445-2|SYT5	nc|ENSG00000129990|O00445-2|SYT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5701599121094	3	421.907151	1262.69962	-0.080866	-3.4118E-05	-2.1384	-0.0009022	-2.2193	-0.00093632	421.9059157688162	17.43	0.90666	17.43	16.839	17.746	0					73	31	4	0	0	0	0.32137	1	1477	1477		1.7423	0.14999	1	184080			40068	3444	23292	23293	48707	48707					0.0787812536830188
RRPLRRRDGT	10	Unmodified	_RRPLRRRDGT_					0	0	0		nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;ENST00000503648.1_1_16:1451355-1464692:-|nuORF;nc|ENSG00000059145|Q9H9P5-5|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5|UNKL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.384765625	2	641.881793	1281.74903	0.56708	0.000364	0.58535	0.00037573	1.1524	0.00073972	641.8818305239422	94.612	0.49771	94.61	94.559	95.057	-0.0020142					74	42	2	0	0	0	0.41085	1	25311	25311		1.4819	0	1	151090			40069	740;12576	23293	23294	48708	48708					0.11942833377111128
RRPPAGLRG	9	Unmodified	_RRPPAGLRG_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2992858886719	2	490.299042	978.583531	-0.01263	-6.1925E-06	0.67711	0.00033199	0.66448	0.0003258	490.29957413472266	14.349	0.9829	14.283	13.661	14.644	-0.066067					42	34	2	0	0	0	0.33276	1	703	703		3.9444	1.6417	1	57797			40070	837	23294	23295	48709	48709					0.09338226588272391
RRPPFRSLP	9	Unmodified	_RRPPFRSLP_					0	0	0			REV__ENST00000381237.5_3_8:22272410-22273351:+|nuORF	REV__ENST00000381237.5_3_8:22272410-22273351:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3355102539062	2	563.335624	1124.6567	0.2306	0.0001299	-0.1828	-0.00010298	0.047798	2.6926E-05	563.3355429880258	25.017	0.90855	24.961	24.486	25.395	-0.055931					61	31	3	0	0	0	0.27726	1	3957	3957		12.241	0.74595	1	266140	+		40071	20561	23295	23296	48710	48710					0.09935355310881278
RRPPLHAA	8	Unmodified	_RRPPLHAA_					0	0	0			REV__ENST00000482818.1_1_22:29724681-29724813:-|nuORF	REV__ENST00000482818.1_1_22:29724681-29724813:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2737731933594	2	459.275035	916.535518	-0.179	-8.2211E-05	-2.0589	-0.00094562	-2.238	-0.0010278	459.2738095733445	12.407	0.17798	12.31	12.206	12.384	-0.096607					9	5	2	0	0	0	0.46491	1	134	134		0.69038	0	1	47665	+		40072	21510	23296	23297	48711	48711					0.07391152668208179
RRPPLHAA	8	Unmodified	_RRPPLHAA_					0	0	0			REV__ENST00000482818.1_1_22:29724681-29724813:-|nuORF	REV__ENST00000482818.1_1_22:29724681-29724813:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	459.275035	916.535518	-0.28835	-0.00013243	-1.8714	-0.00085949	-2.1598	-0.00099192	459.27399822394943	12.414	0.13572	12.414	12.332	12.468	0	0.045176	6.4002E-05	NaN	0.69038	9	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53110	+		40073	21510	23296	23297							0.07391152668208179
RRPPLHAA	8	Unmodified	_RRPPLHAA_					0	0	0			REV__ENST00000482818.1_1_22:29724681-29724813:-|nuORF	REV__ENST00000482818.1_1_22:29724681-29724813:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	459.275035	916.535518	-0.179	-8.2211E-05	-2.0589	-0.00094562	-2.238	-0.0010278	459.2738095733445	12.407	0.17798	12.31	12.206	12.384	-0.096607	-0.058671	-0.00010827	NaN	0.69038	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47665	+		40074	21510	23296	23297							0.07391152668208179
RRPPLHAA	8	Unmodified	_RRPPLHAA_					0	0	0			REV__ENST00000482818.1_1_22:29724681-29724813:-|nuORF	REV__ENST00000482818.1_1_22:29724681-29724813:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	459.275035	916.535518	-0.27457	-0.00012611	-1.8537	-0.00085135	-2.1283	-0.00097746	459.27413709678484	12.45	0.1811	12.382	12.253	12.434	-0.06806	0.013494	8.027E-05	NaN	0.69038	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47538	+		40075	21510	23296	23297							0.07391152668208179
RRPPPPPPP	9	Unmodified	_RRPPPPPPP_					0	0	0		ENSG00000099381|ENST00000262519|SETD1A;nc|ENSG00000117560|P48023-2|FASLG;ENST00000360947.7_1_14:21561312-21566652:-|nuORF;ENSG00000117560|ENST00000367721|FASLG	ENSG00000099381|ENST00000262519|SETD1A;REV__nc|ENSG00000120549|Q5T5P2-2|KIAA1217	ENSG00000099381|ENST00000262519|SETD1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2336730957031	2	505.798343	1009.58213	0.12393	6.2682E-05	-0.10807	-5.4661E-05	0.015857	8.0206E-06	505.79812223632143	19.163	1.0575	19.163	18.765	19.822	0					57	37	2	0	0	0	0.25417	1	2165	2165		8.5933	0.68312	1	45824			40076	1490;15087	23297	23298	48712	48712					0.07772592499509301
RRPPRQQAI	9	Unmodified	_RRPPRQQAI_					0	0	0			REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.75244140625	2	561.336156	1120.65776	0.43333	0.00024324	1.4673	0.00082364	1.9006	0.0010669	561.3369450168873	20.041	0.45613	19.925	19.67	20.126	-0.11592					25	15	2	0	0	0	0.26168	1	2386	2386		1.8442	0.36234	1	45977	+		40077	19107	23298	23299	48713	48713					0.10225569679778346
RRPQSLPF	8	Unmodified	_RRPQSLPF_					0	0	0			REV__ENST00000354379.8_1_3:37217727-37217841:-|nuORF	REV__ENST00000354379.8_1_3:37217727-37217841:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7882995605469	2	500.787976	999.561398	0.55064	0.00027575	0.66871	0.00033488	1.2193	0.00061063	500.78803655262357	82.822	1.2426	82.822	82.287	83.53	0					89	47	3	0	0	0	0.43302	1	21672	21672		11.64	1.5664	1	787180	+		40078	20171	23299	23300	48714	48714					0.061600021198501054
RRPQSLPF	8	Unmodified	_RRPQSLPF_					0	0	0			REV__ENST00000354379.8_1_3:37217727-37217841:-|nuORF	REV__ENST00000354379.8_1_3:37217727-37217841:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.788330078125	2	500.787976	999.561398	0.55064	0.00027575	0.66871	0.00033488	1.2193	0.00061063	500.78803655262357	82.822	1.2426	82.822	82.287	83.53	0					89	47	3	0	0	0	0.33993	1	21620	21620		16.942	16.942	1	787180	+		40079	20171	23299	23300	48715	48715					0.061600021198501054
RRPQSLPF	8	Unmodified	_RRPQSLPF_					0	0	0			REV__ENST00000354379.8_1_3:37217727-37217841:-|nuORF	REV__ENST00000354379.8_1_3:37217727-37217841:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.78851318359375	2	500.787976	999.561398	0.48977	0.00024527	0.76588	0.00038354	1.2557	0.00062882	500.78824063270326	82.847	0.72534	82.827	82.517	83.242	-0.020584					65	28	3	0	0	0	0.41758	1	21673	21673		16.942	2.104	1	834400	+		40080	20171	23299	23300	48716	48716					0.061600021198501054
RRPQSLPF	8	Unmodified	_RRPQSLPF_					0	0	0			REV__ENST00000354379.8_1_3:37217727-37217841:-|nuORF	REV__ENST00000354379.8_1_3:37217727-37217841:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7886047363281	2	500.787976	999.561398	0.48977	0.00024527	0.76588	0.00038354	1.2557	0.00062882	500.78824063270326	82.847	0.72534	82.827	82.517	83.242	-0.020584					65	28	3	0	0	0	0.32886	1	21625	21625		21.747	21.747	1	834400	+		40081	20171	23299	23300	48717	48717					0.061600021198501054
RRPQSLPF	8	Unmodified	_RRPQSLPF_					0	0	0			REV__ENST00000354379.8_1_3:37217727-37217841:-|nuORF	REV__ENST00000354379.8_1_3:37217727-37217841:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	500.787976	999.561398	0.45419	0.00022745	1.058	0.00052986	1.5122	0.00075731	500.7883967718778	82.749	0.94371	82.822	82.24	83.184	0.073097	-0.0012385	0.0001835	NaN	16.942	56	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	953720	+		40082	20171	23299	23300							0.061600021198501054
RRPRLWLE	8	Unmodified	_RRPRLWLE_					0	0	0			REV__ENST00000451424.1_1_1:20974977-20975394:-|nuORF	REV__ENST00000451424.1_1_1:20974977-20975394:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.335693359375	2	563.335624	1124.6567	0.2306	0.0001299	-0.1828	-0.00010298	0.047798	2.6926E-05	563.3355429880258	25.017	0.90855	24.961	24.486	25.395	-0.055931					61	31	3	0	0	0	0.4354	1	3909	3909		10.824	0	1	266140	+		40083	21118	23300	23301	48718	48718					0.09935355310904015
RRPRQAPA	8	Unmodified	_RRPRQAPA_					0	0	0		ENST00000597060.1_1:2121284-2121554:+|nuORF	ENST00000597060.1_1:2121284-2121554:+|nuORF	ENST00000597060.1_1:2121284-2121554:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.28228759765625	2	476.283392	950.552231	-0.20844	-9.9274E-05	-1.8235	-0.00086851	-2.032	-0.00096779	476.28252655497704	12.183	0.10085	12.183	12.119	12.219	0					8	4	2	0	0	0	0.45169	1	56	56		5.2307	0	1	33239			40084	12230	23301	23302	48719	48719					0.07497653554173667
RRPRRRMLA	9	Unmodified	_RRPRRRMLA_					0	0	0			REV__ENST00000529014.5_1_11:10880102-10880318:+|nuORF	REV__ENST00000529014.5_1_11:10880102-10880318:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.37060546875	2	606.372549	1210.73055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.69	1	114.7	114.2	115.2	0.016708								0	0	0	0.26704	1	29820	29820		0.6015	0.14316	1		+		40085	21992	23302	23303	48720	48720					0.13361000201575735
RRPRSSPHL	9	Unmodified	_RRPRSSPHL_					0	0	0			REV__ENST00000380155.3_1_X:16737899-16753391:+|nuORF	REV__ENST00000380155.3_1_X:16737899-16753391:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3203125	2	553.320506	1104.62646	0.0077239	4.2738E-06	-0.016517	-9.1389E-06	-0.0087927	-4.8652E-06	553.3207552002426	13.465	0.39117	13.366	13.217	13.608	-0.099291					22	13	3	0	0	0	0.3208	1	444	444		5.7319	0	1	120270	+		40086	20542	23303	23304	48721	48721					0.07832996645720414
RRPSKKRRRRP	11	Unmodified	_RRPSKKRRRRP_					0	0	0			REV__ENST00000337014.10_2_17:80376485-80377700:+|nuORF	REV__ENST00000337014.10_2_17:80376485-80377700:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2742919921875	3	498.322181	1491.94471	0.36558	0.00018218	-0.18889	-9.4129E-05	0.17669	8.805E-05	498.32180503653933	43.152	0.94669	43.152	42.902	43.849	0					74	34	3	0	0	0	0.33348	1	9629	9629		0.40827	0	1	715110	+		40087	20079	23304	23305	48722	48722					0.21841843621791668
RRPSKKRRRRP	11	Unmodified	_RRPSKKRRRRP_					0	0	0			REV__ENST00000337014.10_2_17:80376485-80377700:+|nuORF	REV__ENST00000337014.10_2_17:80376485-80377700:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.82952880859375	3	498.322181	1491.94471	0.46658	0.00023251	-0.66134	-0.00032956	-0.19475	-9.705E-05	498.6561865909117	45.255	1.0648	45.32	44.978	46.043	0.065052					74	38	3	0	0	0	0.33351	1	10137	10137		0.094841	0	1	349050	+		40088	20079	23304	23305	48723	48723					0.21841843621791668
RRPTLTTF	8	Unmodified	_RRPTLTTF_					0	0	0		ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	ENSG00000197471|ENST00000652691|SPN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3040771484375	2	496.287808	990.561064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.868	1	71.841	71.341	72.341	-0.027275								0	0	0	0.35014	1	18278	18278		14.582	1.0738	1				40089	7967	23305	23306	48724	48724					0.06540582399986761
RRQEQRGRRR	10	Unmodified	_RRQEQRGRRR_					0	0	0			REV__ENST00000509182.1_1_5:61688751-61699599:-|nuORF	REV__ENST00000509182.1_1_5:61688751-61699599:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.60809326171875	3	466.606757	1396.79844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.746	1	91.837	91.337	92.337	0.090668								0	0	0	0.37235	1	24367	24367		5.4027	1.5568	1		+		40090	13973	23306	23307	48725	48725					0.11591541385905657
RRQEQRGRRR	10	Unmodified	_RRQEQRGRRR_					0	0	0			REV__ENST00000509182.1_1_5:61688751-61699599:-|nuORF	REV__ENST00000509182.1_1_5:61688751-61699599:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.6082458496094	3	466.606757	1396.79844	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.152	1	92.241	91.741	92.741	0.089195								0	0	0	0.37145	1	24493	24493		5.7834	0.26014	1		+		40091	13973	23306	23307	48726	48726					0.11591541385905657
RRQGHIVVI	9	Unmodified	_RRQGHIVVI_					0	0	0		ENSG00000080511|ENST00000591589|RDH8	ENSG00000080511|ENST00000591589|RDH8	ENSG00000080511|ENST00000591589|RDH8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8370361328125	2	539.335624	1076.6567	0.070545	3.8048E-05	0.034926	1.8837E-05	0.10547	5.6884E-05	539.3356421264259	13.944	0.30668	13.839	13.685	13.991	-0.10466					25	10	3	0	0	0	0.34681	1	601	601		1.8442	0	1	50823			40092	1157	23307	23308	48727	48727					0.12143355310900006
RRQGLLLSP	9	Unmodified	_RRQGLLLSP_					0	0	0		ENST00000559714.5_1_15:100348375-100353279:+|nuORF	ENST00000559714.5_1_15:100348375-100353279:+|nuORF	ENST00000559714.5_1_15:100348375-100353279:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.3067626953125	2	520.322183	1038.62981	0.43713	0.00022745	0.18598	9.677E-05	0.62312	0.00032422	520.322225755315	35.632	0.655	35.714	35.516	36.171	0.082355					45	23	3	0	0	0	0.25314	1	7187	7187		15.847	0	1	817720			40093	11888	23308	23309	48728	48728					0.11204246699730902
RRQISQKAF	9	Unmodified	_RRQISQKAF_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.32958984375	2	567.330539	1132.64652	0.24926	0.00014142	-0.41895	-0.00023768	-0.16969	-9.6268E-05	567.3301009501672	80.463	2.8102	80.463	78.645	81.455	0					407	117	5	0	0	0	0.30623	2	20703	20703;20750		7.9102	0.3012	1	5542900			40094	6350	23309	23310	48729;48730	48729					0.08550747585650242
RRQISQKAF	9	Unmodified	_RRQISQKAF_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3309326171875	2	567.330539	1132.64652	0.26897	0.0001526	-0.44866	-0.00025454	-0.17969	-0.00010194	567.3300574984545	80.382	2.87	80.447	78.587	81.457	0.065102					380	122	5	0	0	0	0.30623	1	21018	21018		7.9102	0.62092	1	6235000			40095	6350	23309	23310	48731	48731					0.08550747585650242
RRQKTLTVSPL	11	Unmodified	_RRQKTLTVSPL_					0	0	0		ENST00000237536.8_2_20:35406384-35406558:-|nuORF	ENST00000237536.8_2_20:35406384-35406558:-|nuORF	ENST00000237536.8_2_20:35406384-35406558:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8984985351562	2	649.898786	1297.78302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.38	1	93.38	92.88	93.88	-0.00051117								0	0	0	0.32896	1	24866	24866		11.495	0	1				40096	8877	23310	23311	48732	48732					0.14603817025499666
RRQKTLTVSPL	11	Unmodified	_RRQKTLTVSPL_					0	0	0		ENST00000237536.8_2_20:35406384-35406558:-|nuORF	ENST00000237536.8_2_20:35406384-35406558:-|nuORF	ENST00000237536.8_2_20:35406384-35406558:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8981323242188	2	649.898786	1297.78302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.401	1	93.401	92.901	93.901	-0.00051117								0	0	0	0.34539	1	24872	24872		11.495	0	1				40097	8877	23310	23311	48733	48733					0.14603817025499666
RRQQEREQRRR	11	Unmodified	_RRQQEREQRRR_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000476609.1_1_2:102441885-102476398:+|nuORF	nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.6300659179688	3	533.299993	1596.87815	0.13168	7.0226E-05	-3.6169	-0.0019289	-3.4852	-0.0018586	533.2975480511241	111.89	0.064331	111.87	111.81	111.88	-0.015625					7	5	2	0	0	0	0.33351	1	29097	29097		0.094841	0	1	39962			40098	949	23311	23312	48734	48734					0.10358563269232945
RRQQEREQRRR	11	Unmodified	_RRQQEREQRRR_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000476609.1_1_2:102441885-102476398:+|nuORF	nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	533.299993	1596.87815	0.41611	0.00022191	-1.6096	-0.00085837	-1.1934	-0.00063646	533.6341608957894	111.6	0.022102	111.61	111.59	111.62	0.01152	-0.13023	0.0019537	NaN	0.094841	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67401			40099	949	23311	23312							0.10358563269232945
RRQQVLPLKS	10	Unmodified	_RRQQVLPLKS_					0	0	0		nc|ENSG00000205111|Q5MAI5-2|CDKL4	nc|ENSG00000205111|Q5MAI5-2|CDKL4	nc|ENSG00000205111|Q5MAI5-2|CDKL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.9222106933594	3	408.922689	1223.74624	-0.066462	-2.7178E-05	-0.57356	-0.00023454	-0.64002	-0.00026172	408.9222293552945	95.698	2.6041	95.776	95.351	97.955	0.077415					351	255	2	0	0	0	0.38745	1	25584	25584		5.7834	1.3773	1	2129500			40100	12911	23312	23313	48735	48735					0.1433156519960903
RRQQVLPLKS	10	Unmodified	_RRQQVLPLKS_					0	0	0		nc|ENSG00000205111|Q5MAI5-2|CDKL4	nc|ENSG00000205111|Q5MAI5-2|CDKL4	nc|ENSG00000205111|Q5MAI5-2|CDKL4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	408.922689	1223.74624	-0.29617	-0.00012111	-0.65431	-0.00026756	-0.95048	-0.00038867	408.9223135773219	95.813	1.2722	95.813	95.404	96.677	0	0.018307	-1.4204E-05	NaN	5.7834	346	124	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1494400			40101	12911	23312	23313							0.1433156519960903
RRQRGQRWKA	10	Unmodified	_RRQRGQRWKA_					0	0	0		COL22A1|p.K1223Rfs*86|1|0.3|ENSG00000169436|chr8:138626235-138626239|TTCTT/-|frameshift_variant	COL22A1|p.K1223Rfs*86|1|0.3|ENSG00000169436|chr8:138626235-138626239|TTCTT/-|frameshift_variant	COL22A1|p.K1223Rfs*86|1|0.3|ENSG00000169436|chr8:138626235-138626239|TTCTT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.9293518066406	3	447.928949	1340.76502	0.80135	0.00035895	0.032158	1.4404E-05	0.83351	0.00037335	447.9290393457375	50.493	0.60617	50.538	50.292	50.898	0.044891					62	21	4	0	0	0	0.40085	1	11707	11707		3.3196	3.3196	1	1269500			40102	196	23313	23314	48736	48736					0.10826539614026842
RRQRLHRFDS	10	Unmodified	_RRQRLHRFDS_					0	0	0		ENSG00000144468|ENST00000392062|RHBDD1;nc|ENSG00000144468|Q8TEB9-2|RHBDD1;ENST00000493526.1_1_2:227773206-227860235:+|nuORF;ENST00000491490.5_1_2:227771589-227860235:+|nuORF;ENST00000483268.1_1_2:227800125-227860235:+|nuORF	ENSG00000144468|ENST00000392062|RHBDD1	ENSG00000144468|ENST00000392062|RHBDD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.6081848144531	3	457.588592	1369.74395	0.18831	8.6167E-05	-1.489	-0.00068137	-1.3007	-0.0005952	457.58769819303427	89.498	0.12462	89.498	89.442	89.566	0					9	7	2	0	0	0	0.3213	1	23684	23684		1.9064	0.8928	1	34418			40103	4588	23314	23315	48737	48737					0.0738652951451968
RRQRPRALW	9	Unmodified	_RRQRPRALW_					0	0	0		ENST00000525715.5_1_11:1244357-1247464:+|nuORF	ENST00000525715.5_1_11:1244357-1247464:+|nuORF	ENST00000525715.5_1_11:1244357-1247464:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8692626953125	2	619.870697	1237.72684	0.12236	7.5846E-05	-1.4295	-0.0008861	-1.3071	-0.00081026	619.8691099845951	93.934	1.0034	93.934	93.572	94.575	0					131	82	2	0	0	0	0.35563	1	25154	25154		0.52476	0	1	117470			40104	11541	23315	23316	48738	48738					0.11748653699351053
RRQRPWAK	8	Unmodified	_RRQRPWAK_					0	0	0		ENST00000291560.6_1_21:45076563-45078105:-|nuORF	ENST00000291560.6_1_21:45076563-45078105:-|nuORF	ENST00000291560.6_1_21:45076563-45078105:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7735595703125	2	549.325591	1096.63663	0.60563	0.00033269	-1.5314	-0.00084123	-0.92575	-0.00050854	549.3247792793561	29.195	0.45959	29.195	29.006	29.465	0					24	16	2	0	0	0	0.34337	1	5184	5184		5.2307	3.1709	1	156780			40105	9158	23316	23317	48739	48739					0.09217604370928711
RRQRRRRERDR	11	Unmodified	_RRQRRRRERDR_					0	0	0		ENST00000452135.6_3_5:179707603-179719088:-|nuORF	ENST00000452135.6_3_5:179707603-179719088:-|nuORF	ENST00000452135.6_3_5:179707603-179719088:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.3060913085938	3	547.323132	1638.94757	0.1007	5.5114E-05	-1.8532	-0.0010143	-1.7525	-0.00095921	547.3220325868601	13.471	0.37641	13.471	13.254	13.63	0					29	12	4	0	0	0	0.33352	1	384	384		0	0	1	35494			40106	10652	23317	23318	48740	48740					0.15365067008656297
RRQRRRRERDR	11	Unmodified	_RRQRRRRERDR_					0	0	0		ENST00000452135.6_3_5:179707603-179719088:-|nuORF	ENST00000452135.6_3_5:179707603-179719088:-|nuORF	ENST00000452135.6_3_5:179707603-179719088:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	547.323132	1638.94757	0.15252	8.3478E-05	-2.7694	-0.0015158	-2.6169	-0.0014323	547.3214887335278	13.546	0.44363	13.478	13.302	13.746	-0.067495	0.011079	-0.00031725	NaN	0	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48763			40107	10652	23317	23318							0.15365067008656297
RRQRSAKLNH	10	Unmodified	_RRQRSAKLNH_					0	0	0		ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3697509765625	2	633.368518	1264.72248	0.2976	0.00018849	0.45988	0.00029128	0.75749	0.00047977	633.3685978355251	94.667	0.63647	94.749	94.382	95.019	0.082779					91	53	2	0	0	0	0.38515	1	25268	25268		6.2058	6.2058	1	212350			40108	6675	23318	23319	48741	48741					0.10071144485800687
RRQRSSLK	8	Unmodified	_RRQRSSLK_					0	0	0			REV__nc|ENSG00000204113|Q5H9B9|BMP2KL	REV__nc|ENSG00000204113|Q5H9B9|BMP2KL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.295654296875	2	515.815056	1029.61556	-0.19083	-9.8434E-05	1.9652	0.0010137	1.7744	0.00091527	515.8164187008161	13.139	0.19729	13.071	12.965	13.162	-0.067496					11	6	2	0	0	0	0.34437	1	320	320		0.69038	0	1	27043	+		40109	15952	23319	23320	48742	48742					0.10193594271413531
RRQTRRRVVQS	11	Unmodified	_RRQTRRRVVQS_					0	0	0			REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2826843261719	3	481.290546	1440.84981	0.016383	7.8849E-06	2.0852	0.0010036	2.1016	0.0010115	481.6259287911918	28.589	0.423	28.59	28.322	28.745	0.0004673					21	14	2	0	0	0	0.46554	1	5007	5007		2.6312	1.3016	1	87283	+		40110	14188	23320	23321	48743	48743					0.1470186535996163
RRQVLRSARQ	10	Unmodified	_RRQVLRSARQ_					0	0	0			REV__nc|ENSG00000159086|Q9Y5B6-4|PAXBP1	REV__nc|ENSG00000159086|Q9Y5B6-4|PAXBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	635.8245239257812	2	635.384168	1268.75378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.92	1	94.92	94.42	95.42	0								0	0	0	0.38166	1	25331	25331		1.4819	0	1		+		40111	16834	23321	23322	48744	48744					0.13015717519897407
RRQVNQVIF	9	Unmodified	_RRQVNQVIF_					0	0	0			REV__ENST00000281146.9_1_4:130027796-130030758:+|nuORF	REV__ENST00000281146.9_1_4:130027796-130030758:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.33642578125	2	580.338364	1158.66217	0.24705	0.00014337	-1.783	-0.0010347	-1.5359	-0.00089135	580.3369735597896	91.658	0.90181	91.658	91.482	92.383	0					95	65	2	0	0	0	0.33018	1	24332	24332		4.3292	0	1	232230	+		40112	19712	23322	23323	48745	48745					0.08919034102700607
RRQVQAISKSD	11	Unmodified	_RRQVQAISKSD_					0	0	0			REV__ENST00000589204.1_1_18:56196243-56204256:-|nuORF	REV__ENST00000589204.1_1_18:56196243-56204256:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	644.3605346679688	2	644.360025	1286.7055	0.52284	0.0003369	0.64281	0.0004142	1.1656	0.0007511	644.36035809998	87.457	2.7609	87.451	86.557	89.318	-0.0056229					235	127	4	0	0	0	0.44828	1	23054	23054		4.897	0.36815	1	900490	+		40113	22550	23323	23324	48746	48746					0.07361179089321013
RRQVQRHK	8	Unmodified	_RRQVQRHK_					0	0	0			REV__ENSG00000101457|ENST00000372622|DNTTIP1	REV__ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8016967773438	2	554.333947	1106.65334	0.33319	0.0001847	2.6343	0.0014603	2.9675	0.001645	554.3353661013654	16.979	0.29467	16.918	16.756	17.051	-0.060431					22	10	3	0	0	0	0.34408	1	1453	1453		2.3027	0.82083	1	43271	+		40114	14273	23324	23325	48747	48747					0.10428105256892195
RRQVRLRRD	9	Unmodified	_RRQVRLRRD_					0	0	0			REV__ENST00000344120.4_1_5:141704428-141704542:-|nuORF	REV__ENST00000344120.4_1_5:141704428-141704542:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.8851928710938	2	627.884336	1253.75412	0.091485	5.7442E-05	0.69723	0.00043778	0.78871	0.00049522	627.8851805258483	91.61	0.89442	91.701	91.435	92.33	0.090668					119	62	2	0	0	0	0.31038	1	24406	24406		7.2892	0	1	966210	+		40115	20138	23325	23326	48748	48748					0.1373913723973601
RRRAAYKP	8	Unmodified	_RRRAAYKP_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7794189453125	2	509.306867	1016.59918	-0.036634	-1.8658E-05	-0.90777	-0.00046234	-0.94441	-0.00048099	509.30633722323654	12.179	0.31372	12.179	12.018	12.332	0					30	12	5	0	0	0	0.46491	1	6	6		0.69038	0	1	195930	+		40116	16948	23326	23327	48749	48749					0.09154513105306705
RRRARPLPER	10	Unmodified	_RRRARPLPER_					0	0	0			REV__ENST00000290902.9_1_4:1161287-1161425:-|nuORF	REV__ENST00000290902.9_1_4:1161287-1161425:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.2540588378906	3	436.269083	1305.78542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.526	1	81.502	81.002	82.002	-0.02404								0	0	0	0.3773	1	21222	21222		3.3196	0	1		+		40117	19753	23327	23328	48750	48750					0.1447571027383674
RRRARWHWRHL	11	Unmodified	_RRRARWHWRHL_					0	0	0		ENST00000607222.1_1_1:1550199-1550712:-|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.9810180664062	3	543.978526	1628.91375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.78	1	111.76	111.26	112.26	-0.015625								0	0	0	0.3819	1	29079	29079		0.45452	0.45452	1				40118	12308	23328	23329	48751	48751					0.12444690307575001
RRRARWHWRHL	11	Unmodified	_RRRARWHWRHL_					0	0	0		ENST00000607222.1_1_1:1550199-1550712:-|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.9810180664062	3	543.978526	1628.91375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.94	1	111.93	111.43	112.43	-0.015625								0	0	0	0.38223	1	29121	29121		0.08335	0.010087	1				40119	12308	23328	23329	48752	48752					0.12444690307575001
RRRDRRIGPG	10	Unmodified	_RRRDRRIGPG_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8695678710938	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.02	1	101.02	100.52	101.52	0								0	0	0	0.37664	1	26954	26954		3.5965	0	1		+		40120	18631	23329	23330	48753	48753					0.11346564205632603
RRRDRRIGPG	10	Unmodified	_RRRDRRIGPG_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.373046875	2	619.868686	1237.72282	-0.10287	-6.3767E-05	0.55275	0.00034264	0.44988	0.00027887	619.8693595011697	101.8	0.24899	101.83	101.6	101.85	0.027206					49	34	2	0	0	0	0.39935	1	27131	27131		3.5965	0	1	100270	+		40121	18631	23329	23330	48754	48754					0.11346564205632603
RRREQRRP	8	Unmodified	_RRREQRRP_					0	0	0		ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	ENSG00000176619|ENST00000325327|LMNB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.32763671875	2	577.342304	1152.67005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.386	1	31.429	30.929	31.929	0.042364								0	0	0	0.35466	1	5859	5859		12.532	1.7076	1				40122	6938	23330	23331	48755	48755					0.09982606142830264
RRRGQSSSVQL	11	Unmodified	_RRRGQSSSVQL_					0	0	0			REV__ENST00000306917.4_1_15:68570211-68570310:+|nuORF	REV__ENST00000306917.4_1_15:68570211-68570310:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.8826293945312	2	637.357816	1272.70108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.16	1	101.15	100.65	101.65	-0.0054703								0	0	0	0.37501	1	27016	27016		2.7352	0.89096	1		+		40123	19863	23331	23332	48756	48756					0.07563714666434862
RRRHPRAA	8	Unmodified	_RRRHPRAA_					0	0	0			REV__ENST00000246794.9_1_19:50093650-50093761:+|nuORF	REV__ENST00000246794.9_1_19:50093650-50093761:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.3063659667969	2	510.307733	1018.60091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.52	1	115.53	115.03	116.03	0.018738								0	0	0	0.37992	1	30000	30000		0.79363	0	1		+		40124	19508	23332	23333	48757	48757					0.09235566913923776
RRRHRRSTS	9	Unmodified	_RRRHRRSTS_					0	0	0			REV__ENST00000263864.9_1_2:85808699-85808759:+|nuORF	REV__ENST00000263864.9_1_2:85808699-85808759:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3705444335938	2	606.35066	1210.68677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.38	1	111.38	110.88	111.88	0								0	0	0	0.264	1	28972	28972		1.8442	0	1		+		40125	19626	23333	23334	48758	48758					0.08985107028797756
RRRIWGALPL	10	Unmodified	_RRRIWGALPL_					0	0	0			REV__ENST00000288985.11_1_9:98638084-98643219:+|nuORF	REV__ENST00000288985.11_1_9:98638084-98643219:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.7349548339844	3	413.259524	1236.75674	0.37702	0.00015581	2.358	0.00097447	2.735	0.0011303	413.59504048909895	43.464	0.68562	43.542	43.155	43.841	0.077518					40	24	2	0	0	0	0.32068	1	9455	9455		1.7423	1.334	1	159060	+		40126	19743	23334	23335	48759	48759					0.1478359264469873
RRRIWGALPL	10	Unmodified	_RRRIWGALPL_					0	0	0			REV__ENST00000288985.11_1_9:98638084-98643219:+|nuORF	REV__ENST00000288985.11_1_9:98638084-98643219:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	413.259524	1236.75674	-0.082645	-3.4154E-05	3.053	0.0012617	2.9704	0.0012275	413.26070714350914	43.735	0.67683	43.735	43.362	44.039	0	0.094719	0.00036754	NaN	1.7423	37	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166990	+		40127	19743	23334	23335							0.1478359264469873
RRRIWGALPL	10	Unmodified	_RRRIWGALPL_					0	0	0			REV__ENST00000288985.11_1_9:98638084-98643219:+|nuORF	REV__ENST00000288985.11_1_9:98638084-98643219:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	413.259524	1236.75674	0.29387	0.00012145	2.6235	0.0010842	2.9174	0.0012056	413.2603609014992	43.56	0.62486	43.644	43.241	43.866	0.083996	0.0040566	-0.00016497	NaN	1.7423	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210760	+		40128	19743	23334	23335							0.1478359264469873
RRRKKQLP	8	Unmodified	_RRRKKQLP_					0	0	0			REV__ENSG00000186648|ENST00000342740|CARMIL3	REV__ENSG00000186648|ENST00000342740|CARMIL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.8433837890625	2	541.356891	1080.69923	0.13293	7.1965E-05	2.6767	0.001449	2.8096	0.001521	541.3581354410925	12.971	0.33192	12.971	12.815	13.147	0					15	11	2	0	0	0	0.34437	1	240	240		0.69038	0	1	27356	+		40129	18458	23335	23336	48760	48760					0.16210750439131516
RRRKRCRRRWC	11	Unmodified	_RRRKRCRRRWC_					0	0	0		ENST00000319296.9_1_16:30419378-30419444:+|nuORF	ENST00000319296.9_1_16:30419378-30419444:+|nuORF	ENST00000319296.9_1_16:30419378-30419444:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3164672851562	3	544.644272	1630.91099	0.45726	0.00024904	0.54839	0.00029868	1.0056	0.00054772	544.6444271288822	91.506	0.51333	91.506	91.353	91.866	0					50	38	2	0	0	0	0.33352	1	24314	24314		0	0	1	184750			40130	9370	23336	23337	48761	48761					0.12076775586751864
RRRLNNIF	8	Unmodified	_RRRLNNIF_					0	0	0			REV__CON__P04264	REV__CON__P04264	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.818359375	2	544.825424	1087.63629	0.61877	0.00033712	-0.77593	-0.00042275	-0.15716	-8.5624E-05	544.8246270997366	88.086	1.0894	88.086	87.794	88.883	0					136	53	3	0	0	0	0.45015	1	23417	23417		5.7604	3.1829	1	1184100	+	+	40131	13252	23337	23338	48762	48762					0.09598184651076735
RRRLRFSKRNN	11	Unmodified	_RRRLRFSKRNN_					0	0	0			REV__nc|ENSG00000078596|O43736-2|ITM2A	REV__nc|ENSG00000078596|O43736-2|ITM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.6343994140625	3	501.634424	1501.88144	0.25849	0.00012967	-0.06044	-3.0319E-05	0.19805	9.9349E-05	501.63439701827343	94.69	1.0416	94.773	94.011	95.053	0.082779					367	85	6	0	0	0	0.48247	1	25086	25086		0.40827	0.40827	1	5155200	+		40132	13858	23338	23339	48763	48763					0.15057858113937073
RRRLWRWWKLQ	11	Unmodified	_RRRLWRWWKLQ_					0	0	0		chr12:54283225-54283827|538|47.58|0.0|22.18|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|538|47.58|0.0|22.18|+|1|HNRNPA1,HNRNPA1|2	chr12:54283225-54283827|538|47.58|0.0|22.18|+|1|HNRNPA1,HNRNPA1|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2431335449219	4	421.750931	1682.97462	-0.26832	-0.00011316	2.9222	0.0012325	2.6539	0.0011193	421.75183190334417	15.703	0.2931	15.703	15.498	15.791	0					17	9	3	0	0	0	0.33352	1	1099	1099		0	0	1	16476			40133	132	23339	23340	48764	48764					0.1604478256715538
RRRMQPCR	8	Unmodified	_RRRMQPCR_					0	0	0			REV__ENST00000358055.7_2_2:220494090-220495068:+|nuORF	REV__ENST00000358055.7_2_2:220494090-220495068:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2793579101562	2	551.795286	1101.57602	0.31243	0.0001724	0.1139	6.2848E-05	0.42632	0.00023524	551.7952748208346	26.485	0.48525	26.446	26.206	26.692	-0.03867					38	16	3	0	0	0	0.34408	1	4309	4309		2.3027	1.7012	1	204880	+		40134	20228	23340	23341	48765	48765					0.029294277246890488
RRRPARRRQ	9	Unmodified	_RRRPARRRQ_					0	0	0		ENST00000218758.9_1_19:11688490-11689734:-|nuORF;ENST00000592659.1_1_19:11688837-11689734:-|nuORF	ENST00000218758.9_1_19:11688490-11689734:-|nuORF	ENST00000218758.9_1_19:11688490-11689734:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.8905029296875	2	626.390119	1250.76569	0.12677	7.941E-05	-2.2338	-0.0013992	-2.107	-0.0013198	626.3888857060996	111.36	0.13996	111.37	111.31	111.45	0.01152					27	20	2	0	0	0	0.34681	1	29004	29004		1.8442	0.36234	1	118810			40135	8829	23341	23342	48766	48766					0.15033379053738827
RRRPSRSRRRM	11	Unmodified	_RRRPSRSRRRM_					0	0	0			REV__ENST00000562205.1_1_16:2303967-2305746:-|nuORF	REV__ENST00000562205.1_1_16:2303967-2305746:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8214111328125	3	505.299159	1512.87565	0.48341	0.00024427	-1.7601	-0.0008894	-1.2767	-0.00064513	505.2981321048477	29.639	0.33867	29.639	29.521	29.86	0					15	11	2	0	0	0	0.33334	1	5299	5299		1.2148	0	1	67581	+		40136	19011	23342	23343	48767	48767					0.13972436330595883
RRRPSRSRRRM	11	Unmodified	_RRRPSRSRRRM_					0	0	0			REV__ENST00000562205.1_1_16:2303967-2305746:-|nuORF	REV__ENST00000562205.1_1_16:2303967-2305746:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.3113098144531	3	505.299159	1512.87565	0.34094	0.00017228	-1.8433	-0.00093141	-1.5023	-0.00075913	505.29851906308085	29.606	0.25039	29.619	29.469	29.72	0.012266					17	7	3	0	0	0	0.46704	1	5332	5332		2.4348	0	1	59918	+		40137	19011	23342	23343	48768	48768					0.13972436330595883
RRRPSRSRRRM	11	Unmodified	_RRRPSRSRRRM_					0	0	0			REV__ENST00000562205.1_1_16:2303967-2305746:-|nuORF	REV__ENST00000562205.1_1_16:2303967-2305746:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.8214111328125	3	505.299159	1512.87565	0.34094	0.00017228	-1.8433	-0.00093141	-1.5023	-0.00075913	505.29851906308085	29.606	0.25039	29.619	29.469	29.72	0.012266					17	7	3	0	0	0	0.33296	1	5280	5280		2.6312	1.4164	1	59918	+		40138	19011	23342	23343	48769	48769					0.13972436330595883
RRRPSRSRRRM	11	Unmodified	_RRRPSRSRRRM_					0	0	0			REV__ENST00000562205.1_1_16:2303967-2305746:-|nuORF	REV__ENST00000562205.1_1_16:2303967-2305746:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.8211975097656	3	505.299159	1512.87565	0.09126	4.6114E-05	-1.2561	-0.00063469	-1.1648	-0.00058858	505.29874584806015	29.658	0.31746	29.671	29.507	29.824	0.013474					19	10	3	0	0	0	0.33334	1	5296	5296		1.2148	0	1	95831	+		40139	19011	23342	23343	48770	48770					0.13972436330595883
RRRQQKKHE	9	Unmodified	_RRRQQKKHE_					0	0	0		ENST00000420911.2_2_7:143269250-143269313:+|nuORF	ENST00000420911.2_2_7:143269250-143269313:+|nuORF	ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3694458007812	2	633.368518	1264.72248	0.16085	0.00010188	0.74741	0.00047339	0.90826	0.00057526	633.368855753747	94.737	1.1468	94.737	94.247	95.394	0					172	104	2	0	0	0	0.34536	1	25370	25370		2.0598	0.40713	1	164490			40140	10367	23343	23344	48771	48771					0.1007114448577795
RRRQQKKHE	9	Unmodified	_RRRQQKKHE_					0	0	0		ENST00000420911.2_2_7:143269250-143269313:+|nuORF	ENST00000420911.2_2_7:143269250-143269313:+|nuORF	ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3690185546875	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.04	1	116.04	115.54	116.54	0								0	0	0	0.2672	1	30056	30056		0.52476	0	1				40141	10367	23343	23344	48772	48772					0.1007114448577795
RRRQQKKHE	9	Unmodified	_RRRQQKKHE_					0	0	0		ENST00000420911.2_2_7:143269250-143269313:+|nuORF	ENST00000420911.2_2_7:143269250-143269313:+|nuORF	ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.368408203125	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.39	1	118.39	117.89	118.89	0								0	0	0	0.2672	1	30584	30584		0.52476	0	1				40142	10367	23343	23344	48773	48773					0.1007114448577795
RRRQQKKHE	9	Unmodified	_RRRQQKKHE_					0	0	0		ENST00000420911.2_2_7:143269250-143269313:+|nuORF	ENST00000420911.2_2_7:143269250-143269313:+|nuORF	ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3679809570312	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.4	1	116.42	115.92	116.92	0.020988								0	0	0	0.2672	1	30204	30204		0.52476	0	1				40143	10367	23343	23344	48774	48774					0.1007114448577795
RRRQQKKHE	9	Unmodified	_RRRQQKKHE_					0	0	0		ENST00000420911.2_2_7:143269250-143269313:+|nuORF	ENST00000420911.2_2_7:143269250-143269313:+|nuORF	ENST00000420911.2_2_7:143269250-143269313:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3688354492188	2	633.368518	1264.72248	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.18	1	118.2	117.7	118.7	0.023476								0	0	0	0.2672	1	30609	30609		0.52476	0	1				40144	10367	23343	23344	48775	48775					0.1007114448577795
RRRQWRGRRRG	11	Unmodified	_RRRQWRGRRRG_					0	0	0		ENST00000491143.2_1_18:55102944-55103118:+|nuORF	ENST00000491143.2_1_18:55102944-55103118:+|nuORF	ENST00000491143.2_1_18:55102944-55103118:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2868041992188	3	513.973663	1538.89916	0.37616	0.00019334	2.5961	0.0013343	2.9723	0.0015277	514.3094489149632	48.511	0.21703	48.551	48.367	48.584	0.040081					9	7	2	0	0	0	0.33347	1	11073	11073		0.45452	0	1	143010			40145	11174	23344	23345	48776	48776					0.1512661815941101
RRRRCRRAP	9	Unmodified	_RRRRCRRAP_					0	0	0		ENST00000416246.5_1_7:26331577-26386057:+|nuORF	ENST00000416246.5_1_7:26331577-26386057:+|nuORF	ENST00000416246.5_1_7:26331577-26386057:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.210693359375	3	409.579374	1225.71629	-0.1039	-4.2557E-05	-2.1435	-0.00087795	-2.2475	-0.00092051	409.5787749782115	18.376	0.4285	18.259	17.896	18.325	-0.11739					21	14	2	0	0	0	0.26238	1	1848	1848		1.0715	0	1	32255			40146	10318	23345	23346	48777	48777					0.11246347773294474
RRRRGTFKR	9	Unmodified	_RRRRGTFKR_					0	0	0		ENSG00000173327|ENST00000309100|MAP3K11;nc|ENSG00000173327|Q16584-2|MAP3K11;ENST00000524856.1_1_11:65374036-65375591:-|nuORF	ENSG00000173327|ENST00000309100|MAP3K11	ENSG00000173327|ENST00000309100|MAP3K11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2361145019531	3	411.590156	1231.74864	-0.13893	-5.7183E-05	0.61792	0.00025433	0.47898	0.00019715	411.5904402615503	12.888	0.19416	12.789	12.7	12.894	-0.099291					11	6	2	0	0	0	0.26275	1	252	252		0.23584	0	1	36289			40147	6716	23346	23347	48778	48778					0.14203458447923367
RRRRKGRQRPI	11	Unmodified	_RRRRKGRQRPI_					0	0	0		ENST00000308664.10_1_12:110719006-110719138:+|nuORF	ENST00000308664.10_1_12:110719006-110719138:+|nuORF	ENST00000308664.10_1_12:110719006-110719138:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.9847412109375	3	493.650297	1477.92906	0.29872	0.00014746	0.34611	0.00017086	0.64483	0.00031832	493.6504642742409	103.06	0.38036	103.05	102.72	103.1	-0.0011139					85	47	2	0	0	0	0.48495	1	27385	27385		0.08335	0	1	3282200			40148	9294	23347	23348	48779	48779					0.20921557104793465
RRRRKLRRPTQ	11	Unmodified	_RRRRKLRRPTQ_					0	0	0			REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3256530761719	3	508.325702	1521.95528	-0.083963	-4.268E-05	0.41379	0.00021034	0.32983	0.00016766	508.3259091231751	104.26	0.26958	104.26	104.14	104.41	0					72	35	3	0	0	0	0.48502	2	27679	27679;27710		0.073264	0.073264	1	874760	+		40149	19968	23348	23349	48780;48781	48780					0.21517826276249252
RRRRKLRRPTQ	11	Unmodified	_RRRRKLRRPTQ_					0	0	0			REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.32659912109375	3	508.325702	1521.95528	-0.083979	-4.2689E-05	1.1373	0.00057814	1.0534	0.00053545	508.32623299130785	104.43	0.28144	104.43	104.38	104.67	0					44	38	2	0	0	0	0.33352	1	27740	27740		0	0	1	367510	+		40150	19968	23348	23349	48782	48782					0.21517826276249252
RRRRKLRRPTQ	11	Unmodified	_RRRRKLRRPTQ_					0	0	0			REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.6603088378906	3	508.325702	1521.95528	0.066421	3.3764E-05	0.45368	0.00023062	0.5201	0.00026438	508.3258849175817	104.23	0.403	104.23	103.98	104.38	0.0018463					137	54	3	0	0	0	0.48502	2	27663	27663;27693		0.073264	0	1	956130	+		40151	19968	23348	23349	48783;48784	48783					0.21517826276249252
RRRRKLRRPTQ	11	Unmodified	_RRRRKLRRPTQ_					0	0	0			REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.6603088378906	3	508.325702	1521.95528	0.066421	3.3764E-05	0.45368	0.00023062	0.5201	0.00026438	508.3258849175817	104.23	0.403	104.23	103.98	104.38	0.0018463					137	54	3	0	0	0	0.33352	1	27663	27663		0.073264	0	1	956130	+		40152	19968	23348	23349	48785	48785					0.21517826276249252
RRRRKLRRPTQ	11	Unmodified	_RRRRKLRRPTQ_					0	0	0			REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	REV__ENST00000321448.12_1_11:74648098-74660104:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3259582519531	3	508.325702	1521.95528	0.22576	0.00011476	0.53851	0.00027374	0.76427	0.0003885	508.3259753220917	104.33	0.72166	104.34	104.16	104.88	0.0011444					219	100	4	0	0	0	0.48502	4	27710	27710;27746;27794;27801		0.073264	0.073264	1	989350	+		40153	19968	23348	23349	48786;48787;48788;48789	48786					0.21517826276249252
RRRRKRLRQDP	11	Unmodified	_RRRRKRLRQDP_					0	0	0		ENST00000493195.5_1_1:159899139-159902434:-|nuORF;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9;ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000493195.5_1_1:159899139-159902434:-|nuORF	ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9855346679688	3	512.985457	1535.93454	0.15086	7.7388E-05	0.097964	5.0254E-05	0.24882	0.00012764	512.9854785989495	95.207	1.4638	95.29	94.991	96.454	0.082779					488	133	5	0	0	0	0.48247	2	25416	25416;25451		0.40827	0.32491	1	2048500			40154	1259	23349	23350	48790;48791	48790					0.18801235896580692
RRRRKRLRQDP	11	Unmodified	_RRRRKRLRQDP_					0	0	0		ENST00000493195.5_1_1:159899139-159902434:-|nuORF;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9;ENST00000496645.5_1_1:159897137-159899822:-|nuORF	ENST00000493195.5_1_1:159899139-159902434:-|nuORF	ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.9854736328125	3	512.985457	1535.93454	0.29783	0.00015278	-0.084592	-4.3394E-05	0.21323	0.00010939	512.9853669633272	94.909	2.7831	94.907	93.879	96.662	-0.0020065					726	251	4	0	0	0	0.48247	1	25482	25482		0.40827	0.32491	1	2444700			40155	1259	23349	23350	48792	48792					0.18801235896580692
RRRRKRRHIT	10	Unmodified	_RRRRKRRHIT_					0	0	0			REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.97491455078125	3	478.974893	1433.90285	0.30891	0.00014796	-0.26431	-0.0001266	0.044595	2.136E-05	478.97468531043614	39.623	1.8006	39.716	39.052	40.852	0.09267					225	64	5	0	0	0	0.41825	1	8350	8350		0.12286	0.014929	1	4354800	+		40156	22891	23350	23351	48793	48793					0.2032528793331494
RRRRKRRHIT	10	Unmodified	_RRRRKRRHIT_					0	0	0			REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.9748229980469	3	478.974893	1433.90285	0.030434	1.4577E-05	0.18033	8.6373E-05	0.21076	0.00010095	478.9748408632772	101.4	0.62698	101.42	101.39	102.01	0.027214					199	84	4	0	0	0	0.41825	1	27057	27057		0.12286	0.12286	1	822760	+		40157	22891	23350	23351	48794	48794					0.2032528793331494
RRRRKRRHIT	10	Unmodified	_RRRRKRRHIT_					0	0	0			REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	478.974893	1433.90285	0.20614	9.8737E-05	-0.040125	-1.9219E-05	0.16602	7.9518E-05	478.9747401012518	101.59	0.97806	101.58	101.27	102.25	-0.0054703	0.079579	-0.00011098	NaN	0.12286	375	135	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1371200	+		40158	22891	23350	23351							0.2032528793331494
RRRRLWRWWW	10	Unmodified	_RRRRLWRWWW_					0	0	0		chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2938232421875	3	552.979755	1655.91744	0.27551	0.00015235	1.3584	0.00075115	1.6339	0.0009035	553.3148907702607	112.33	0.18412	112.34	112.27	112.45	0.0131					31	22	2	0	0	0	0.32176	1	29255	29255		0	0	1	46693			40159	133	23351	23352	48795	48795					0.1157136008141606
RRRRLWRWWW	10	Unmodified	_RRRRLWRWWW_					0	0	0		chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	chr12:54283228-54283827|537|23.73|0.0|21.18|+|1|HNRNPA1,HNRNPA1|2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	552.979755	1655.91744	-0.050995	-2.8199E-05	1.942	0.0010739	1.891	0.0010457	552.9807790945496	112.29	0.20067	112.29	112.22	112.42	0	-0.028025	0.00058654	NaN	0	36	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40052			40160	133	23351	23352							0.1157136008141606
RRRRPRRRVP	10	Unmodified	_RRRRPRRRVP_					0	0	0			REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF	REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.97076416015625	3	468.971371	1403.89228	0.0056294	2.64E-06	-0.14627	-6.8597E-05	-0.14064	-6.5957E-05	468.97121262723107	43.663	1.129	43.663	43.333	44.462	0					125	41	4	0	0	0	0.41512	3	9561	9561;9609;9659		0.69767	0.69767	1	2816200	+		40161	20232	23352	23353	48796;48797;48798	48796					0.20649305278834618
RRRRPRRRVP	10	Unmodified	_RRRRPRRRVP_					0	0	0			REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF	REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	468.971371	1403.89228	0.21753	0.00010201	-0.40745	-0.00019108	-0.18992	-8.9067E-05	468.9711071608415	43.462	1.1047	43.539	43.127	44.232	0.077515	-0.050345	-8.928E-05	NaN	0.69767	119	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2994900	+		40162	20232	23352	23353							0.20649305278834618
RRRRPRRRVP	10	Unmodified	_RRRRPRRRVP_					0	0	0			REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF	REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	468.971371	1403.89228	0.28316	0.00013279	-0.44275	-0.00020764	-0.15959	-7.4845E-05	469.3054333508143	43.483	1.3706	43.567	43.14	44.511	0.083992	-0.022894	-0.00013895	NaN	0.69767	126	50	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2666500	+		40163	20232	23352	23353							0.20649305278834618
RRRRRAGHGG	10	Unmodified	_RRRRRAGHGG_					0	0	0		ENST00000305877.12_2_22:23522425-23523292:+|nuORF	ENST00000305877.12_2_22:23522425-23523292:+|nuORF	ENST00000305877.12_2_22:23522425-23523292:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8458862304688	2	589.845545	1177.67654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.12	1	116.09	115.59	116.59	-0.022781								0	0	0	0.38209	1	30089	30089		0	0	1				40164	9268	23353	23354	48799	48799					0.09480544094208199
RRRRRAGHGG	10	Unmodified	_RRRRRAGHGG_					0	0	0		ENST00000305877.12_2_22:23522425-23523292:+|nuORF	ENST00000305877.12_2_22:23522425-23523292:+|nuORF	ENST00000305877.12_2_22:23522425-23523292:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8461303710938	2	589.845545	1177.67654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.75	1	118.77	118.27	119.27	0.026253								0	0	0	0.38209	1	30739	30739		0	0	1				40165	9268	23353	23354	48800	48800					0.09480544094208199
RRRRRAHRERH	11	Unmodified	_RRRRRAHRERH_					0	0	0			REV__ENST00000317357.9_1_6:107955847-107956252:+|nuORF	REV__ENST00000317357.9_1_6:107955847-107956252:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3126831054688	3	529.312567	1584.91587	0.51549	0.00027286	0.83349	0.00044118	1.349	0.00071403	529.3130686308751	96.597	1.3479	96.591	96.198	97.546	-0.0055466					225	132	3	0	0	0	0.48486	1	25851	25851		0.094841	0	1	365460	+		40166	19942	23354	23355	48801	48801					0.14681119045394553
RRRRRAHRERH	11	Unmodified	_RRRRRAHRERH_					0	0	0			REV__ENST00000317357.9_1_6:107955847-107956252:+|nuORF	REV__ENST00000317357.9_1_6:107955847-107956252:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8131713867188	3	529.312567	1584.91587	0.51549	0.00027286	0.83349	0.00044118	1.349	0.00071403	529.3130686308751	96.597	1.3479	96.591	96.198	97.546	-0.0055466					225	132	3	0	0	0	0.33352	1	26115	26115		0	0	1	365460	+		40167	19942	23354	23355	48802	48802					0.14681119045394553
RRRRRAHRERH	11	Unmodified	_RRRRRAHRERH_					0	0	0			REV__ENST00000317357.9_1_6:107955847-107956252:+|nuORF	REV__ENST00000317357.9_1_6:107955847-107956252:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	529.312567	1584.91587	0.27426	0.00014517	0.86189	0.00045621	1.1361	0.00060138	529.3130041747147	96.297	0.62965	96.374	96.199	96.828	0.077415	-0.10877	2.6963E-05	NaN	0.094841	115	63	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288230	+		40168	19942	23354	23355							0.14681119045394553
RRRRRQRQRKM	11	Unmodified	_RRRRRQRQRKM_					0	0	0		ENST00000560608.5_1_15:58971480-59041769:-|nuORF;ENST00000561149.1_1_15:58974496-59041769:-|nuORF;ENST00000558733.5_1_15:58947546-59041769:-|nuORF	ENST00000560608.5_1_15:58971480-59041769:-|nuORF	ENST00000560608.5_1_15:58971480-59041769:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.9034729003906	4	407.500013	1625.97094	-0.17377	-7.0813E-05	1.7134	0.00069821	1.5396	0.0006274	407.50066219767405	25.386	0.44294	25.386	25.12	25.562	0					20	14	2	0	0	0	0.33348	1	4025	4025		0.40827	0.32491	1	43098			40169	11880	23355	23356	48803	48803					0.1829978952162037
RRRRRRAW	8	Unmodified	_RRRRRRAW_					0	0	0			REV__ENST00000306917.4_1_15:68570518-68570671:+|nuORF	REV__ENST00000306917.4_1_15:68570518-68570671:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8722534179688	2	606.874105	1211.73366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.61	1	118.58	118.08	119.08	-0.024147								0	0	0	0.38004	1	30653	30653		0.69038	0	1		+		40170	19864	23356	23357	48804	48804					0.13626011370593005
RRRRRRPPKSQ	11	Unmodified	_RRRRRRPPKSQ_					0	0	0			REV__ENST00000254998.2_1_20:23331374-23334728:+|nuORF	REV__ENST00000254998.2_1_20:23331374-23334728:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.31005859375	3	498.310052	1491.90833	0.31717	0.00015805	-0.10975	-5.4691E-05	0.20742	0.00010336	498.3098867039719	93.838	0.46288	93.925	93.682	94.145	0.086678					145	35	5	0	0	0	0.48247	1	25041	25041		0.40827	0	1	2571100	+		40171	19548	23357	23358	48805	48805					0.18204966725102167
RRRRRRPYPRP	11	Unmodified	_RRRRRRPYPRP_					0	0	0			REV__ENST00000533683.6_2_19:14201006-14201489:-|nuORF	REV__ENST00000533683.6_2_19:14201006-14201489:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.9854125976562	3	522.65393	1564.93996	0.27246	0.0001424	0.077031	4.026E-05	0.34949	0.00018266	522.6539496429464	96.588	0.51994	96.658	96.592	97.112	0.070465					64	49	2	0	0	0	0.33352	1	25812	25812		0	0	1	525440	+		40172	22045	23358	23359	48806	48806					0.1800895947906156
RRRRRRRRRGE	11	Unmodified	_RRRRRRRRRGE_					0	0	0			REV__ENST00000497336.1_1_X:48316945-48325440:-|nuORF	REV__ENST00000497336.1_1_X:48316945-48325440:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7884521484375	3	537.335483	1608.98462	0.28908	0.00015533	-2.9089	-0.0015631	-2.6199	-0.0014077	537.3326826655917	31.55	0.54272	31.55	31.202	31.745	0					37	19	4	0	0	0	0.33348	1	5918	5918		0.40827	0	1	359380	+		40173	21684	23359	23360	48807	48807					0.20448783345068478
RRRRRRRRTEL	11	Unmodified	_RRRRRRRRTEL_					0	0	0		ENST00000396212.6_1_16:19535261-19535342:+|nuORF	ENST00000396212.6_1_16:19535261-19535342:+|nuORF	ENST00000396212.6_1_16:19535261-19535342:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.5803527832031	4	403.505724	1609.99379	-0.1548	-6.2462E-05	-3.788	-0.0015285	-3.9428	-0.0015909	403.50443602712255	31.412	0.40944	31.453	31.15	31.559	0.040991					29	14	4	0	0	0	0.33351	1	5871	5871		0	0	1	159940			40174	10107	23360	23361	48808	48808					0.21319131910786382
RRRRRRRRTEL	11	Unmodified	_RRRRRRRRTEL_					0	0	0		ENST00000396212.6_1_16:19535261-19535342:+|nuORF	ENST00000396212.6_1_16:19535261-19535342:+|nuORF	ENST00000396212.6_1_16:19535261-19535342:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		4	403.505724	1609.99379	-0.35746	-0.00014424	-3.2741	-0.0013211	-3.6315	-0.0014653	403.50439661289147	31.557	0.32857	31.6	31.296	31.624	0.042366	0.073188	0.00011287	NaN	0	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310300			40175	10107	23360	23361							0.21319131910786382
RRRRSRQRQRY	11	Unmodified	_RRRRSRQRQRY_					0	0	0			REV__ENSG00000175646|ENST00000312511|PRM1	REV__ENSG00000175646|ENST00000312511|PRM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.9851684570312	3	539.984228	1616.93085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.553	1	97.553	97.053	98.053	0								0	0	0	0.38222	1	26092	26092		0.094841	0.094841	1		+		40176	17903	23361	23362	48809	48809					0.147065661227316
RRRRSRQRQRY	11	Unmodified	_RRRRSRQRQRY_					0	0	0			REV__ENSG00000175646|ENST00000312511|PRM1	REV__ENSG00000175646|ENST00000312511|PRM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.9854125976562	3	539.984228	1616.93085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.674	1	97.674	97.174	98.174	0								0	0	0	0.3823	1	26126	26126		0	0	1		+		40177	17903	23361	23362	48810	48810					0.147065661227316
RRRRSRQRQRY	11	Unmodified	_RRRRSRQRQRY_					0	0	0			REV__ENSG00000175646|ENST00000312511|PRM1	REV__ENSG00000175646|ENST00000312511|PRM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.9853515625	3	539.984228	1616.93085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.816	1	97.816	97.316	98.316	0								0	0	0	0.3823	1	26164	26164		0	0	1		+		40178	17903	23361	23362	48811	48811					0.147065661227316
RRRRSRQRQRY	11	Unmodified	_RRRRSRQRQRY_					0	0	0			REV__ENSG00000175646|ENST00000312511|PRM1	REV__ENSG00000175646|ENST00000312511|PRM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.9852294921875	3	539.984228	1616.93085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.76	1	96.755	96.255	97.255	-0.0055466								0	0	0	0.3823	1	25885	25885		0	0	1		+		40179	17903	23361	23362	48812	48812					0.147065661227316
RRRRSRQRQRY	11	Unmodified	_RRRRSRQRQRY_					0	0	0			REV__ENSG00000175646|ENST00000312511|PRM1	REV__ENSG00000175646|ENST00000312511|PRM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.9853515625	3	539.984228	1616.93085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.89	1	96.885	96.385	97.385	-0.0055466								0	0	0	0.3823	1	25922	25922		0	0	1		+		40180	17903	23361	23362	48813	48813					0.147065661227316
RRRRSRQRQRY	11	Unmodified	_RRRRSRQRQRY_					0	0	0			REV__ENSG00000175646|ENST00000312511|PRM1	REV__ENSG00000175646|ENST00000312511|PRM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.9852294921875	3	539.984228	1616.93085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.151	1	97.146	96.646	97.646	-0.0055466								0	0	0	0.3823	1	26002	26002		0	0	1		+		40181	17903	23361	23362	48814	48814					0.147065661227316
RRRRSRQRQRY	11	Unmodified	_RRRRSRQRQRY_					0	0	0			REV__ENSG00000175646|ENST00000312511|PRM1	REV__ENSG00000175646|ENST00000312511|PRM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.9853515625	3	539.984228	1616.93085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.278	1	97.272	96.772	97.772	-0.0055466								0	0	0	0.3823	1	26039	26039		0	0	1		+		40182	17903	23361	23362	48815	48815					0.147065661227316
RRRRSRQRQRY	11	Unmodified	_RRRRSRQRQRY_					0	0	0			REV__ENSG00000175646|ENST00000312511|PRM1	REV__ENSG00000175646|ENST00000312511|PRM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.9857177734375	3	539.984228	1616.93085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.527	1	97.521	97.021	98.021	-0.0068283								0	0	0	0.3823	1	26113	26113		0	0	1		+		40183	17903	23361	23362	48816	48816					0.147065661227316
RRRRSRQRQRY	11	Unmodified	_RRRRSRQRQRY_					0	0	0			REV__ENSG00000175646|ENST00000312511|PRM1	REV__ENSG00000175646|ENST00000312511|PRM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.9853515625	3	539.984228	1616.93085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.781	1	97.774	97.274	98.274	-0.0068283								0	0	0	0.3823	1	26184	26184		0	0	1		+		40184	17903	23361	23362	48817	48817					0.147065661227316
RRRRSSRRRHR	11	Unmodified	_RRRRSSRRRHR_					0	0	0			REV__ENST00000605386.1_1_12:90102939-90103125:+|nuORF	REV__ENST00000605386.1_1_12:90102939-90103125:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8034057617188	3	526.988084	1577.94242	0.6096	0.00032125	1.3122	0.00069152	1.9218	0.0010128	526.988868965451	44.461	0.78045	44.53	44.199	44.979	0.068573					51	28	3	0	0	0	0.33352	1	9882	9882		0	0	1	212330	+		40185	22655	23362	23363	48818	48818					0.17656807936714358
RRRRTLYRNY	10	Unmodified	_RRRRTLYRNY_					0	0	0			REV__ENSG00000108511|ENST00000225648|HOXB6	REV__ENSG00000108511|ENST00000225648|HOXB6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.6134033203125	3	485.279759	1452.81745	-0.16948	-8.2245E-05	-0.21113	-0.00010246	-0.38061	-0.0001847	485.279824370604	108.52	0.72346	108.52	108.39	109.12	0					273	114	3	0	0	0	0.41585	1	28482	28482		0.56317	0.10865	1	2688300	+		40186	14601	23363	23364	48819	48819					0.10915077956997266
RRRRTLYRNY	10	Unmodified	_RRRRTLYRNY_					0	0	0			REV__ENSG00000108511|ENST00000225648|HOXB6	REV__ENSG00000108511|ENST00000225648|HOXB6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	485.279759	1452.81745	-0.16948	-8.2245E-05	-0.21113	-0.00010246	-0.38061	-0.0001847	485.279824370604	108.52	0.72346	108.52	108.39	109.12	0	-0.029838	0.0002433	NaN	0.56317	273	114	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2688300	+		40187	14601	23363	23364							0.10915077956997266
RRRRTLYRNY	10	Unmodified	_RRRRTLYRNY_					0	0	0			REV__ENSG00000108511|ENST00000225648|HOXB6	REV__ENSG00000108511|ENST00000225648|HOXB6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	485.279759	1452.81745	0.021016	1.0199E-05	-0.45208	-0.00021938	-0.43106	-0.00020919	485.2796802153278	108.58	1.0275	108.57	108.36	109.38	-0.010574	0.015616	-0.00010749	NaN	0.56317	238	162	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3472100	+		40188	14601	23363	23364							0.10915077956997266
RRRRTLYRNY	10	Unmodified	_RRRRTLYRNY_					0	0	0			REV__ENSG00000108511|ENST00000225648|HOXB6	REV__ENSG00000108511|ENST00000225648|HOXB6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	485.279759	1452.81745	0.23432	0.00011371	-0.51902	-0.00025187	-0.2847	-0.00013816	485.2796708714251	108.56	0.60574	108.57	108.38	108.98	0.0083618	0.014222	-0.00020494	NaN	0.56317	183	96	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2510400	+		40189	14601	23363	23364							0.10915077956997266
RRRRVRPHTQL	11	Unmodified	_RRRRVRPHTQL_					0	0	0			REV__ENST00000436427.1_3_1:43148660-43161876:+|nuORF	REV__ENST00000436427.1_3_1:43148660-43161876:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.30279541015625	3	492.302786	1473.88653	-0.029777	-1.4659E-05	0.25877	0.00012739	0.229	0.00011273	492.30283159825257	98.971	0.81907	98.971	98.666	99.485	0					241	100	3	0	0	0	0.48486	1	26477	26477		0.094841	0	1	443740	+		40190	21006	23364	23365	48820	48820					0.16854161976539217
RRRRVRPHTQL	11	Unmodified	_RRRRVRPHTQL_					0	0	0			REV__ENST00000436427.1_3_1:43148660-43161876:+|nuORF	REV__ENST00000436427.1_3_1:43148660-43161876:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	492.302786	1473.88653	0.15854	7.8048E-05	0.22112	0.00010886	0.37966	0.00018691	492.30279212926274	98.747	0.72627	98.798	98.581	99.307	0.050888	-0.086325	-3.164E-05	NaN	0.094841	227	94	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	490380	+		40191	21006	23364	23365							0.16854161976539217
RRRRWRQRRRW	11	Unmodified	_RRRRWRQRRRW_					0	0	0			REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3612060546875	3	590.019495	1767.03666	-0.012389	-7.3098E-06	1.5711	0.000927	1.5587	0.00091969	590.3540589913416	101.67	0.18968	101.67	101.63	101.82	0					29	23	2	0	0	0	0.33348	1	27096	27096		0.40827	0.40827	1	67804	+		40192	20419	23365	23366	48821	48821					0.1838194675883642
RRRRWRQRRRW	11	Unmodified	_RRRRWRQRRRW_					0	0	0			REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3428344726562	3	590.019495	1767.03666	0.14253	8.4093E-05	1.8024	0.0010634	1.9449	0.0011475	590.354309335016	100.68	0.24211	100.72	100.57	100.81	0.039001					46	33	2	0	0	0	0.33352	1	26896	26896		0.08335	0.08335	1	79284	+		40193	20419	23365	23366	48822	48822					0.1838194675883642
RRRSGRREPK	10	Unmodified	_RRRSGRREPK_					0	0	0			REV__ENST00000418359.7_2_12:70636994-70671968:+|nuORF	REV__ENST00000418359.7_2_12:70636994-70671968:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.3873291015625	2	649.387242	1296.75993	0.25344	0.00016458	0.87251	0.0005666	1.1259	0.00073118	649.3876758327615	95.25	1.0619	95.333	94.669	95.731	0.082779					126	94	2	0	0	0	0.41085	3	25393	25393;25443;25447		1.4819	1.4819	1	184690	+		40194	20835	23366	23367	48823;48824;48825	48823					0.12342235751407316
RRRSGRREPK	10	Unmodified	_RRRSGRREPK_					0	0	0			REV__ENST00000418359.7_2_12:70636994-70671968:+|nuORF	REV__ENST00000418359.7_2_12:70636994-70671968:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.3870239257812	2	649.387242	1296.75993	0.37171	0.00024138	0.7892	0.0005125	1.1609	0.00075388	649.3875930397958	95.208	0.95196	95.206	94.868	95.82	-0.0020142					135	88	2	0	0	0	0.41085	1	25483	25483		1.4819	1.4819	1	156060	+		40195	20835	23366	23367	48826	48826					0.12342235751407316
RRRSHPGAPA	10	Unmodified	_RRRSHPGAPA_					0	0	0		ENST00000525250.5_1_11:821680-823850:+|nuORF	ENST00000525250.5_1_11:821680-823850:+|nuORF	ENST00000525250.5_1_11:821680-823850:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.2551879882812	2	552.810305	1103.60606	0.34542	0.00019095	2.799	0.0015473	3.1444	0.0017383	552.8121306986919	31.688	0.10068	31.729	31.672	31.772	0.040991					5	3	2	0	0	0	0.31691	1	5959	5959		9.3831	1.2276	1	122330			40196	11535	23367	23368	48827	48827					0.058398259858904566
RRRVNQFL	8	Unmodified	_RRRVNQFL_					0	0	0		nc|ENSG00000113525|P05113-2|IL5;ENSG00000113525|ENST00000231454|IL5	nc|ENSG00000113525|P05113-2|IL5	nc|ENSG00000113525|P05113-2|IL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3170776367188	2	544.825424	1087.63629	0.61877	0.00033712	-0.77593	-0.00042275	-0.15716	-8.5624E-05	544.8246270997366	88.086	1.0894	88.086	87.794	88.883	0					136	53	3	0	0	0	0.4397	1	23183	23183		9.3474	0	1	1184100			40197	2509	23368	23369	48828	48828					0.09598184651076735
RRRVPGWPLRL	11	Unmodified	_RRRVPGWPLRL_					0	0	0			REV__ENST00000310045.7_1_18:65182719-65183692:-|nuORF	REV__ENST00000310045.7_1_18:65182719-65183692:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2428894042969	3	469.293228	1404.85786	0.12808	6.0109E-05	0.45559	0.0002138	0.58367	0.00027391	469.2932838895847	89.748	0.18623	89.748	89.645	89.831	0					35	14	3	0	0	0	0.33346	1	23762	23762		0.50596	0.34663	1	149620	+		40198	19891	23369	23370	48829	48829					0.17162044347401206
RRRVPGWPLRL	11	Unmodified	_RRRVPGWPLRL_					0	0	0			REV__ENST00000310045.7_1_18:65182719-65183692:-|nuORF	REV__ENST00000310045.7_1_18:65182719-65183692:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.95941162109375	3	469.293228	1404.85786	0.13757	6.4559E-05	0.76949	0.00036112	0.90705	0.00042567	469.29348949088154	89.561	0.23524	89.561	89.41	89.645	0					34	15	3	0	0	0	0.33346	1	23730	23730		0.094841	0	1	272340	+		40199	19891	23369	23370	48830	48830					0.17162044347401206
RRRWQKTRRKR	11	Unmodified	_RRRWQKTRRKR_					0	0	0			REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF	REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3363037109375	3	543.004852	1625.99273	0.3923	0.00021302	0.25509	0.00013852	0.6474	0.00035154	543.0050189497266	97.021	0.33292	97.092	96.842	97.175	0.070465					42	30	3	0	0	0	0.33352	1	25910	25910		0	0	1	284460	+		40200	19680	23370	23371	48831	48831					0.20476917541827788
RRRWRKRWRRW	11	Unmodified	_RRRWRKRWRRW_					0	0	0		ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.3801879882812	3	600.024358	1797.05124	0.43929	0.00026359	-3.2411	-0.0019447	-2.8018	-0.0016812	600.0220651282708	93.949	0.13551	94.036	93.975	94.111	0.086678					14	11	2	0	0	0	0.33334	1	25055	25055		1.2148	1.12	1	80154			40201	8965	23371	23372	48832	48832					0.1846001890696698
RRRWRKRWRRW	11	Unmodified	_RRRWRKRWRRW_					0	0	0		ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.3805541992188	3	600.024358	1797.05124	0.44415	0.0002665	-2.9448	-0.001767	-2.5007	-0.0015005	600.3573327764672	93.802	0.29797	93.889	93.695	93.993	0.08667					30	22	2	0	0	0	0.33348	1	25011	25011		0.40827	0.40827	1	71356			40202	8965	23371	23372	48833	48833					0.1846001890696698
RRRWRKRWRRW	11	Unmodified	_RRRWRKRWRRW_					0	0	0		ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	600.024358	1797.05124	0.34782	0.0002087	-3.2612	-0.0019568	-2.9134	-0.0017481	600.0217190526346	93.886	0.27579	93.886	93.696	93.971	0	-0.075117	-2.1828E-05	NaN	1.2148	21	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54141			40203	8965	23371	23372							0.1846001890696698
RRRWRKRWRRW	11	Unmodified	_RRRWRKRWRRW_					0	0	0		ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	ENST00000261427.9_1_4:39699814-39699901:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	600.024358	1797.05124	0.49815	0.0002989	-3.3424	-0.0020055	-2.8443	-0.0017066	600.3570527222906	93.723	0.26611	93.723	93.552	93.818	-0.00051117	-0.083027	-0.0003066	NaN	0.40827	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96269			40204	8965	23371	23372							0.1846001890696698
RRRWRPGPP	9	Unmodified	_RRRWRPGPP_					0	0	0			REV__ENST00000233535.8_1_2:27481772-27486087:-|nuORF	REV__ENST00000233535.8_1_2:27481772-27486087:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.344482421875	2	589.344315	1176.67408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.84	1	118.84	118.34	119.34	0								0	0	0	0.26704	1	30687	30687		0.6015	0.14316	1		+		40205	19475	23372	23373	48834	48834					0.09280695636562086
RRRYKVVEEEK	11	Unmodified	_RRRYKVVEEEK_					0	0	0			REV__ENST00000484142.1_1_2:64068347-64069260:+|nuORF	REV__ENST00000484142.1_1_2:64068347-64069260:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.95123291015625	3	497.951196	1490.83176	0.24158	0.0001203	-0.030809	-1.5341E-05	0.21077	0.00010495	497.9510623228856	18.424	0.68766	18.424	18.051	18.738	0					53	23	3	0	0	0	0.47786	1	1926	1926		1.0136	0.60531	1	116820	+		40206	21528	23373	23374	48835	48835					0.10597685594620998
RRSFSPATV	9	Unmodified	_RRSFSPATV_					0	0	0		ENST00000564834.1_1_7:152161405-152161798:+|nuORF	ENST00000564834.1_1_7:152161405-152161798:+|nuORF	ENST00000564834.1_1_7:152161405-152161798:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.226806640625	2	510.78289	1019.55123	0.077472	3.9571E-05	-0.17668	-9.0246E-05	-0.09921	-5.0675E-05	510.78282138864824	18.011	0.48771	17.894	17.663	18.151	-0.11739					25	16	2	0	0	0	0.19839	1	1878	1878		28.487	1.6032	1	75918			40207	11957	23374	23375	48836	48836					0.04223394394625757
RRSFSPGTR	9	Unmodified	_RRSFSPGTR_					0	0	0			REV__ENST00000477184.5_1_7:102122979-102123225:-|nuORF	REV__ENST00000477184.5_1_7:102122979-102123225:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.9220581054688	2	532.291414	1062.56827	0.0057263	3.0481E-06	0.90364	0.000481	0.90937	0.00048405	532.2918172145918	14.079	0.17829	13.975	13.845	14.023	-0.10466					8	5	2	0	0	0	0.25843	1	589	589		5.7319	0.97584	1	24806	+		40208	21432	23375	23376	48837	48837					0.03949315000431852
RRSLEFKINRL	11	Unmodified	_RRSLEFKINRL_					0	0	0			REV__nc|ENSG00000111783|Q33E94-4|RFX4	REV__nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.95635986328125	3	477.956282	1430.84702	0.27559	0.00013172	-0.021416	-1.0236E-05	0.25417	0.00012148	477.9562243680456	40.339	1.4242	40.339	39.644	41.069	0					146	51	4	0	0	0	0.40539	2	8569	8569;8616		10.527	0.41697	1	3653800	+		40209	14736	23376	23377	48838;48839	48838					0.14882597182463542
RRSLEFKINRL	11	Unmodified	_RRSLEFKINRL_					0	0	0			REV__nc|ENSG00000111783|Q33E94-4|RFX4	REV__nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.9563903808594	3	477.956282	1430.84702	0.47482	0.00022694	-0.34046	-0.00016272	0.13436	6.4219E-05	477.9561191462074	40.156	1.1621	40.249	39.69	40.852	0.09267					118	41	4	0	0	0	0.37764	1	8508	8508		14.171	4.1545	1	3646300	+		40210	14736	23376	23377	48840	48840					0.14882597182463542
RRSLEFKINRL	11	Unmodified	_RRSLEFKINRL_					0	0	0			REV__nc|ENSG00000111783|Q33E94-4|RFX4	REV__nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.9562683105469	3	477.956282	1430.84702	0.35903	0.0001716	-0.22029	-0.00010529	0.13874	6.6311E-05	477.9561634628376	40.111	1.2084	40.21	39.676	40.884	0.099403					121	43	4	0	0	0	0.38248	1	8539	8539		13.535	3.5187	1	3552500	+		40211	14736	23376	23377	48841	48841					0.14882597182463542
RRSLWAAP	8	Unmodified	_RRSLWAAP_					0	0	0			REV__ENST00000321867.5_1_12:132405934-132406579:+|nuORF	REV__ENST00000321867.5_1_12:132405934-132406579:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.77392578125	2	478.774868	955.535184	-0.1578	-7.5551E-05	-0.78611	-0.00037637	-0.94391	-0.00045192	478.77411213715067	12.852	0.96891	12.785	12.58	13.549	-0.067496					71	33	3	0	0	0	0.45431	1	304	304		4.3292	0.73274	1	120570	+		40212	19971	23377	23378	48842	48842					0.055637329483602116
RRSPGGAF	8	Unmodified	_RRSPGGAF_					0	0	0		ENST00000264951.8_1_3:142151730-142166889:-|nuORF	ENST00000264951.8_1_3:142151730-142166889:-|nuORF	ENST00000264951.8_1_3:142151730-142166889:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.58587646484375	2	424.230294	846.446034	-0.18107	-7.6815E-05	-1.6115	-0.00068364	-1.7926	-0.00076046	424.2297334652191	18.317	0.20476	18.317	18.158	18.363	0					8	6	2	0	0	0	0.34272	1	1870	1870		7.9102	1.187	1	17034			40213	9033	23378	23379	48843	48843					0.016668979888549984
RRSPVIEFWEN	11	Unmodified	_RRSPVIEFWEN_					0	0	0		nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8	nc|ENSG00000130821|P48029-4|SLC6A8	nc|ENSG00000130821|P48029-4|SLC6A8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.77752685546875	3	478.249242	1431.7259	0.23461	0.0001122	1.4042	0.00067155	1.6388	0.00078375	478.2496625493488	19.729	1.1473	19.613	18.863	20.01	-0.11592					68	39	4	0	0	0	0.3325	1	2423	2423		4.1166	1.4854	1	59093			40214	3522	23379	23380	48844	48844					0.02730349749162997
RRSPVIEFWEN	11	Unmodified	_RRSPVIEFWEN_					0	0	0		nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8	nc|ENSG00000130821|P48029-4|SLC6A8	nc|ENSG00000130821|P48029-4|SLC6A8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7776184082031	3	478.249242	1431.7259	0.27656	0.00013226	1.3104	0.00062668	1.5869	0.00075894	478.24972790700224	19.683	1.1303	19.628	18.876	20.006	-0.055693					51	39	2	0	0	0	0.33146	1	2361	2361		6.6235	4.1887	1	75099			40215	3522	23379	23380	48845	48845					0.02730349749162997
RRSRAHKWVA	10	Unmodified	_RRSRAHKWVA_					0	0	0			REV__ENST00000298292.12_1_14:50100267-50100483:-|nuORF	REV__ENST00000298292.12_1_14:50100267-50100483:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8712158203125	2	633.868154	1265.72176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.587	1	92.587	92.087	93.087	0								0	0	0	0.37739	1	24630	24630		3.2813	0.28607	1		+		40216	19807	23380	23381	48846	48846					0.09952349836748908
RRSRRRPRPQK	11	Unmodified	_RRSRRRPRPQK_					0	0	0			REV__ENSG00000173848|ENST00000355029|NET1	REV__ENSG00000173848|ENST00000355029|NET1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.31005859375	3	498.310052	1491.90833	0.30111	0.00015005	0.046221	2.3033E-05	0.34733	0.00017308	498.30997351245185	94.149	1.2064	94.236	94.127	95.334	0.086678					325	104	4	0	0	0	0.48558	1	25081	25081		0	0	1	1866000	+		40217	17808	23381	23382	48847	48847					0.18204966725102167
RRSVLPLLTR	10	Unmodified	_RRSVLPLLTR_					0	0	0			REV__nc|ENSG00000114270|Q02388-2|COL7A1	REV__nc|ENSG00000114270|Q02388-2|COL7A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.9288635253906	3	404.262935	1209.76697	-0.002991	-1.2091E-06	1.5385	0.00062197	1.5355	0.00062076	404.26363093906974	41.411	0.21561	41.508	41.341	41.557	0.096626					13	7	2	0	0	0	0.31787	1	8928	8928		9.7643	2.2872	1	1736100	+		40218	14828	23382	23383	48848	48848					0.1704815557927759
RRTKKILCW	9	Unmodified	_RRTKKILCW_					0	0	0		ENST00000382044.8_1_15:43784217-43784558:-|nuORF	ENST00000382044.8_1_15:43784217-43784558:-|nuORF	ENST00000382044.8_1_15:43784217-43784558:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.3607177734375	2	602.360785	1202.70702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.329	1	17.329	16.829	17.829	0								0	0	0	0.26734	1	1597	1597		0.45834	0	1				40219	10003	23383	23384	48849	48849					0.11377141644356925
RRTKKRGGEE	10	Unmodified	_RRTKKRGGEE_					0	0	0			REV__ENST00000235307.6_1_1:184356213-184476760:+|nuORF	REV__ENST00000235307.6_1_1:184356213-184476760:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8472900390625	2	608.847084	1215.67962	0.38361	0.00023356	-0.00485	-2.9529E-06	0.37876	0.00023061	608.8471235616498	82.21	1.8068	82.186	81.474	83.281	-0.024048					154	73	3	0	0	0	0.40106	1	21680	21680		3.2813	0	1	827070	+		40220	19481	23384	23385	48850	48850					0.08040329637719879
RRTQEIRR	8	Unmodified	_RRTQEIRR_					0	0	0			REV__ENST00000417901.5_1_3:49155182-49156664:-|nuORF	REV__ENST00000417901.5_1_3:49155182-49156664:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8309326171875	2	557.831237	1113.64792	0.33009	0.00018413	0.036754	2.0502E-05	0.36684	0.00020464	557.830978325442	90.752	0.52471	90.752	90.518	91.043	0					94	40	3	0	0	0	0.45307	1	24089	24089		4.756	0.81161	1	478650	+		40221	19855	23385	23386	48851	48851					0.09564381674408651
RRTQEIRR	8	Unmodified	_RRTQEIRR_					0	0	0			REV__ENST00000417901.5_1_3:49155182-49156664:-|nuORF	REV__ENST00000417901.5_1_3:49155182-49156664:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.8311767578125	2	557.831237	1113.64792	0.39459	0.00022012	0.08293	4.6261E-05	0.47752	0.00026638	557.8309532834132	90.801	0.53534	90.801	90.509	91.045	0.00039673					93	41	3	0	0	0	0.45307	1	24093	24093		4.756	0.81161	1	445290	+		40222	19855	23385	23386	48852	48852					0.09564381674408651
RRTRDGFFTL	10	Unmodified	_RRTRDGFFTL_					0	0	0		nc|ENSG00000167112|O95900-2|TRUB2;ENSG00000167112|ENST00000372890|TRUB2	nc|ENSG00000167112|O95900-2|TRUB2	nc|ENSG00000167112|O95900-2|TRUB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.9009094238281	3	423.566794	1267.67855	-0.24827	-0.00010516	-0.26817	-0.00011359	-0.51644	-0.00021875	423.5665924790056	28.613	0.8326	28.613	28.268	29.1	0.00046921					43	29	2	0	0	0	0.36368	1	5025	5025		10.151	2.5416	1	186360			40223	6150	23386	23387	48853	48853					0.055421152687813446
RRTRDGFFTL	10	Unmodified	_RRTRDGFFTL_					0	0	0		nc|ENSG00000167112|O95900-2|TRUB2;ENSG00000167112|ENST00000372890|TRUB2	nc|ENSG00000167112|O95900-2|TRUB2	nc|ENSG00000167112|O95900-2|TRUB2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	423.566794	1267.67855	-0.2012	-8.522E-05	-0.45169	-0.00019132	-0.65289	-0.00027654	423.5665646339686	28.549	0.62209	28.545	28.306	28.928	-0.0042572	-0.024936	-8.5966E-05	NaN	10.151	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251020			40224	6150	23386	23387							0.055421152687813446
RRTRIRRRAAH	11	Unmodified	_RRTRIRRRAAH_					0	0	0			REV__ENST00000561547.5_1_16:28890342-28890897:-|nuORF	REV__ENST00000561547.5_1_16:28890342-28890897:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.6347351074219	3	483.634647	1447.88211	0.32116	0.00015532	-0.042395	-2.0504E-05	0.27876	0.00013482	483.6345235467183	89.326	0.46108	89.326	88.965	89.426	0					48	20	3	0	0	0	0.48486	1	23614	23614		0.094841	0.011491	1	449420	+		40225	22307	23387	23388	48854	48854					0.1760869755364638
RRTRIRRRAAH	11	Unmodified	_RRTRIRRRAAH_					0	0	0			REV__ENST00000561547.5_1_16:28890342-28890897:-|nuORF	REV__ENST00000561547.5_1_16:28890342-28890897:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.635009765625	3	483.634647	1447.88211	0.3052	0.00014761	0.030959	1.4973E-05	0.33616	0.00016258	483.6345822649157	89.502	0.85438	89.593	89.099	89.954	0.090561					132	56	4	0	0	0	0.48558	1	23599	23599		0	0	1	862430	+		40226	22307	23387	23388	48855	48855					0.1760869755364638
RRTRIRRRAAH	11	Unmodified	_RRTRIRRRAAH_					0	0	0			REV__ENST00000561547.5_1_16:28890342-28890897:-|nuORF	REV__ENST00000561547.5_1_16:28890342-28890897:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	483.634647	1447.88211	0.32116	0.00015532	-0.042395	-2.0504E-05	0.27876	0.00013482	483.6345235467183	89.326	0.46108	89.326	88.965	89.426	0	-0.18545	-4.4239E-05	NaN	0.094841	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449420	+		40227	22307	23387	23388							0.1760869755364638
RRTRIRRRAAH	11	Unmodified	_RRTRIRRRAAH_					0	0	0			REV__ENST00000561547.5_1_16:28890342-28890897:-|nuORF	REV__ENST00000561547.5_1_16:28890342-28890897:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	483.634647	1447.88211	0.38651	0.00018693	-0.042772	-2.0686E-05	0.34374	0.00016625	483.6345475685821	89.616	0.83876	89.615	89.078	89.917	-0.00081635	0.10372	-4.4785E-05	NaN	0.094841	129	57	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	755280	+		40228	22307	23387	23388							0.1760869755364638
RRTRNLLPFGI	11	Unmodified	_RRTRNLLPFGI_					0	0	0		ENST00000471836.1_1_22:44577677-44581773:+|nuORF;ENST00000475485.6_1_22:44577677-44582522:+|nuORF	ENST00000471836.1_1_22:44577677-44581773:+|nuORF	ENST00000471836.1_1_22:44577677-44581773:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2730712890625	3	448.273722	1341.79934	0.54825	0.00024577	-1.3455	-0.00060315	-0.79724	-0.00035738	448.2728966230744	46.931	0.45486	46.931	46.789	47.244	0					33	15	3	0	0	0	0.44966	1	10649	10649		4.7159	1.1232	1	586300			40229	10882	23388	23389	48856	48856					0.14210942982253982
RRTRNLLPFGI	11	Unmodified	_RRTRNLLPFGI_					0	0	0		ENST00000471836.1_1_22:44577677-44581773:+|nuORF;ENST00000475485.6_1_22:44577677-44582522:+|nuORF	ENST00000471836.1_1_22:44577677-44581773:+|nuORF	ENST00000471836.1_1_22:44577677-44581773:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	448.273722	1341.79934	0.20988	9.4085E-05	-1.0395	-0.00046599	-0.82963	-0.0003719	448.27288433459745	46.937	0.61484	46.989	46.764	47.379	0.052574	0.022363	0.00046317	NaN	4.7159	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467090			40230	10882	23388	23389							0.14210942982253982
RRTRNLLPFGI	11	Unmodified	_RRTRNLLPFGI_					0	0	0		ENST00000471836.1_1_22:44577677-44581773:+|nuORF;ENST00000475485.6_1_22:44577677-44582522:+|nuORF	ENST00000471836.1_1_22:44577677-44581773:+|nuORF	ENST00000471836.1_1_22:44577677-44581773:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	448.273722	1341.79934	0.71307	0.00031965	-1.5272	-0.0006846	-0.81412	-0.00036495	448.2729340728227	46.927	0.5917	46.981	46.768	47.36	0.054371	0.013838	-0.00019267	NaN	4.7159	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540060			40231	10882	23388	23389							0.14210942982253982
RRTRRPPFRSL	11	Unmodified	_RRTRRPPFRSL_					0	0	0			REV__ENST00000381237.5_3_8:22272410-22273351:+|nuORF	REV__ENST00000381237.5_3_8:22272410-22273351:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2823486328125	3	481.291887	1440.85383	0.01429	6.8779E-06	-0.72582	-0.00034933	-0.71153	-0.00034245	481.62582226109276	28.539	0.41911	28.539	28.31	28.729	0					21	14	2	0	0	0	0.47545	1	5039	5039		1.3296	0	1	131940	+		40232	20561	23389	23390	48857	48857					0.1510395485368008
RRTTRLIRPRR	11	Unmodified	_RRTTRLIRPRR_					0	0	0			REV__ENST00000321892.8_1_17:65822219-65850151:+|nuORF	REV__ENST00000321892.8_1_17:65822219-65850151:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.9847412109375	3	494.318436	1479.93348	0.30327	0.00014991	0.83346	0.00041199	1.1367	0.00056191	494.3188594018591	102.97	0.23027	102.97	102.76	102.99	-0.0011139					42	29	2	0	0	0	0.33334	1	27385	27385		1.2148	0.76031	1	588910	+		40233	19972	23390	23391	48858	48858					0.2127102152765019
RRVGKFIKTF	10	Unmodified	_RRVGKFIKTF_					0	0	0			REV__ENSG00000096968|ENST00000381652|JAK2	REV__ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.3886108398438	2	626.387857	1250.76116	0.12645	7.921E-05	1.075	0.00067335	1.2014	0.00075256	626.3887605547325	111.84	0.17879	111.85	111.77	111.95	0.0131					32	21	2	0	0	0	0.41673	1	29121	29121		0.40072	0.050084	1	70784	+		40234	14117	23391	23392	48859	48859					0.14581057067607617
RRVIWLHRM	9	Unmodified	_RRVIWLHRM_					0	0	0			REV__ENST00000531120.5_1_11:32611159-32616479:+|nuORF	REV__ENST00000531120.5_1_11:32611159-32616479:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8723754882812	2	633.871851	1265.72915	-0.062076	-3.9348E-05	1.7773	0.0011266	1.7152	0.0010872	633.8715096289072	119.41	0.080551	119.41	119.38	119.46	0					12	9	2	0	0	0	0.35563	1	30809	30809		0.52476	0	1	23547	+		40235	22018	23392	23393	48860	48860					0.10691366112791911
RRVLLGGL	8	Unmodified	_RRVLLGGL_					0	0	0		ENSG00000173825|ENST00000309880|TIGD3	ENSG00000173825|ENST00000309880|TIGD3	ENSG00000173825|ENST00000309880|TIGD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.9090881347656	2	442.295436	882.57632	0.24107	0.00010662	1.0752	0.00047554	1.3162	0.00058216	442.29589123796035	32.523	0.3245	32.577	32.415	32.739	0.054375					27	11	3	0	0	0	0.34185	1	6167	6167		10.183	0	1	245390			40236	6753	23393	23394	48861	48861					0.1303349398787077
RRVNERVRK	9	Unmodified	_RRVNERVRK_					0	0	0			REV__ENST00000579647.1_1_18:2653232-2655380:-|nuORF	REV__ENST00000579647.1_1_18:2653232-2655380:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8720703125	2	606.873437	1211.73232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.43	1	113.45	112.95	113.95	0.014824								0	0	0	0.2672	1	29513	29513		0.52476	0	1		+		40237	22478	23394	23395	48862	48862					0.13492332491159686
RRVQRPFRRRR	11	Unmodified	_RRVQRPFRRRR_					0	0	0		ENST00000257696.4_1_7:128095970-128097306:+|nuORF	ENST00000257696.4_1_7:128095970-128097306:+|nuORF	ENST00000257696.4_1_7:128095970-128097306:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7736206054688	3	528.329447	1581.96651	0.37279	0.00019696	-0.74663	-0.00039447	-0.37384	-0.00019751	528.3288796586966	93.615	0.13361	93.702	93.615	93.749	0.08667					13	9	2	0	0	0	0.33352	1	24943	24943		0	0	1	132590			40238	8938	23395	23396	48863	48863					0.19880648370349263
RRVRPVSLMVP	11	Unmodified	_RRVRPVSLMVP_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2676086425781	3	437.267691	1308.78124	0.17291	7.5608E-05	0.40966	0.00017913	0.58257	0.00025474	437.2678696804243	44.898	1.2356	44.973	44.449	45.685	0.075047					200	45	5	0	0	0	0.46704	1	10197	10197		2.4348	0.18206	1	4147200			40239	4934	23396	23397	48864	48864					0.13920484735899663
RRVRVNELLG	10	Unmodified	_RRVRVNELLG_					0	0	0			REV__nc|ENSG00000128641|O43795-2|MYO1B;REV__ENSG00000176658|ENST00000318217|MYO1D	REV__nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8720092773438	2	606.370195	1210.72584	0.2762	0.00016748	-0.17686	-0.00010724	0.099341	6.0237E-05	606.3698505364051	110.59	0.11406	110.6	110.55	110.66	0.01152					21	17	2	0	0	0	0.4155	1	28871	28871		1.4819	1.1313	1	175230	+		40240	15381;17945	23397	23398	48865	48865					0.12890394539795125
RRVVPANPNR	10	Unmodified	_RRVVPANPNR_					0	0	0			REV__ENST00000539256.5_1_12:19282733-19418734:+|nuORF	REV__ENST00000539256.5_1_12:19282733-19418734:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8463134765625	2	589.846887	1177.67922	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.61	1	117.64	117.14	118.14	0.023476								0	0	0	0.38126	1	30480	30480		1.6526	0.32309	1		+		40241	13570	23398	23399	48866	48866					0.09748954708493329
RRWAVGAAVLL	11	Unmodified	_RRWAVGAAVLL_					0	0	0			REV__ENST00000470229.5_1_7:151038900-151038933:+|nuORF	REV__ENST00000470229.5_1_7:151038900-151038933:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3697509765625	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.88	1	110.87	110.37	111.37	-0.013939								0	0	0	0.38114	1	28894	28894		1.3295	0	1		+		40242	20787	23399	23400	48867	48867					0.13292484033490837
RRWGGRTL	8	Unmodified	_RRWGGRTL_					0	0	0			REV__ENST00000464559.1_1_2:113956206-113958989:+|nuORF	REV__ENST00000464559.1_1_2:113956206-113958989:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2584533691406	2	501.291217	1000.56788	0.29777	0.00014927	-0.9125	-0.00045743	-0.61473	-0.00030816	501.29049288555126	80.137	0.39118	80.202	79.979	80.37	0.065094					23	14	2	0	0	0	0.33993	1	20835	20835		11.64	11.64	1	219310	+		40243	21265	23400	23401	48868	48868					0.06761940071237404
RRWGWEWRRKR	11	Unmodified	_RRWGWEWRRKR_					0	0	0			REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF	REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5751037597656	4	418.735546	1670.91308	-0.18422	-7.7141E-05	-0.972	-0.00040701	-1.1562	-0.00048415	418.9856270571832	25.538	0.16483	25.507	25.434	25.599	-0.031408					6	5	2	0	0	0	0.33352	1	4098	4098		0.073264	0.073264	1	31415	+		40244	21170	23401	23402	48869	48869					0.1044585086783627
RRWLKRGI	8	Unmodified	_RRWLKRGI_					0	0	0			REV__ENSG00000121853|ENST00000241256|GHSR;REV__nc|ENSG00000121853|Q92847-2|GHSR	REV__nc|ENSG00000121853|Q92847-2|GHSR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2781982421875	2	542.846159	1083.67777	0.32744	0.00017775	-0.98813	-0.00053641	-0.66069	-0.00035865	542.8456739338279	18.216	0.30852	18.158	18.004	18.313	-0.058174					14	10	2	0	0	0	0.34437	1	1861	1861		0.69038	0	1	33454	+		40245	15132;22972	23402	23403	48870	48870					0.1392736541040449
RRWLVRDT	8	Unmodified	_RRWLVRDT_					0	0	0			REV__SYNJ1|p.P1238Lfs*21|1|0.29|ENSG00000159082|chr21:32639774-32639774|A/-|frameshift_variant	REV__SYNJ1|p.P1238Lfs*21|1|0.29|ENSG00000159082|chr21:32639774-32639774|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.783935546875	2	551.317432	1100.62031	0.65925	0.00036346	-0.78651	-0.00043362	-0.12726	-7.0161E-05	551.3186992946722	58.537	0.77921	58.523	58.278	59.058	-0.014267					60	27	3	0	0	0	0.30795	1	14346	14346		30.637	11.275	1	1138800	+		40246	16833	23403	23404	48871	48871					0.07402478414155667
RRWQKTRRKRR	11	Unmodified	_RRWQKTRRKRR_					0	0	0			REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF	REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.6708984375	3	543.004852	1625.99273	0.64752	0.00035161	-0.097525	-5.2957E-05	0.55	0.00029865	543.004812887087	95.288	0.20406	95.286	95.183	95.387	-0.0020142					32	20	2	0	0	0	0.33352	1	25468	25468		0	0	1	183050	+		40247	19680	23404	23405	48872	48872					0.2047691754180505
RRWQKTRRKRR	11	Unmodified	_RRWQKTRRKRR_					0	0	0			REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF	REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.7978515625	3	543.004852	1625.99273	0.53412	0.00029003	-1.2117	-0.00065796	-0.67759	-0.00036793	543.3376599961697	98.984	0.060417	98.977	98.924	98.984	-0.006897					8	6	2	0	0	0	0.33352	1	26516	26516		0	0	1	65802	+		40248	19680	23404	23405	48873	48873					0.2047691754180505
RRWQVERRR	9	Unmodified	_RRWQVERRR_					0	0	0		ENST00000508390.1_1_3:131245302-131245881:+|nuORF	ENST00000508390.1_1_3:131245302-131245881:+|nuORF	ENST00000508390.1_1_3:131245302-131245881:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.92950439453125	3	447.928949	1340.76502	0.89482	0.00040082	0.018641	8.3498E-06	0.91346	0.00040917	447.9290308156068	50.539	0.72075	50.559	50.281	51.002	0.020691					74	26	4	0	0	0	0.33321	1	11705	11705		3.8763	3.8763	1	1186600			40249	11349	23405	23406	48874	48874					0.10826539614004105
RRWRFDATL	9	Unmodified	_RRWRFDATL_					0	0	0		PADI3|p.T270Lfs*13|1|0.12|ENSG00000142619|chr1:17270388-17270401|ACTCTGCTGGACGA/-|frameshift_variant;ENSG00000142619|ENST00000375460|PADI3	PADI3|p.T270Lfs*13|1|0.12|ENSG00000142619|chr1:17270388-17270401|ACTCTGCTGGACGA/-|frameshift_variant	PADI3|p.T270Lfs*13|1|0.12|ENSG00000142619|chr1:17270388-17270401|ACTCTGCTGGACGA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.91925048828125	3	407.559751	1219.65742	-0.21687	-8.8387E-05	1.0164	0.00041425	0.79956	0.00032587	407.8945407843798	29.638	0.58367	29.651	29.39	29.974	0.013475					38	19	3	0	0	0	0.25992	1	5288	5288		4.5289	3.0737	1	82072			40250	4455	23406	23407	48875	48875					0.056381499599410745
RRWRPERIP	9	Unmodified	_RRWRPERIP_					0	0	0		nc|ENSG00000167302|Q96N21-2|TEPSIN;nc|ENSG00000167302|Q96N21|TEPSIN;ENSG00000167302|ENST00000637944|TEPSIN	nc|ENSG00000167302|Q96N21-2|TEPSIN	nc|ENSG00000167302|Q96N21-2|TEPSIN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3682250976562	2	633.37053	1264.72651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.67	1	119.67	119.17	120.17	0								0	0	0	0.26513	1	30866	30866		1.4819	0.28856	1				40251	6166	23407	23408	48876	48876					0.10473233979519136
RRWRREIIAA	10	Unmodified	_RRWRREIIAA_					0	0	0		ENST00000304414.11_1_16:18810104-18812862:-|nuORF	ENST00000304414.11_1_16:18810104-18812862:-|nuORF	ENST00000304414.11_1_16:18810104-18812862:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.2418212890625	3	442.9337	1325.77927	0.067345	2.9829E-05	-1.9414	-0.00085989	-1.874	-0.00083006	443.26687925519803	22.408	0.54704	22.408	22.189	22.736	0					27	18	2	0	0	0	0.32137	1	3077	3077		1.7423	1.0446	1	333000			40252	9257	23408	23409	48877	48877					0.1294119204233084
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.01171875	3	557.012118	1668.01452	-0.063047	-3.5118E-05	-0.52158	-0.00029053	-0.58463	-0.00032564	557.0116634568896	98.522	0.4814	98.522	98.334	98.815	0					107	53	3	0	0	0	0.48495	3	26345	26345;26381;26426		0.08335	0	1	401440	+		40253	22259	23409	23410	48878;48879;48880	48878					0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.0116577148438	3	557.012118	1668.01452	-0.078249	-4.3586E-05	-0.60424	-0.00033657	-0.68249	-0.00038015	557.0118267038341	98.849	0.10421	98.849	98.808	98.912	0					34	13	3	0	0	0	0.48558	1	26458	26458		0	0	1	191960	+		40254	22259	23409	23410	48881	48881					0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.0119018554688	3	557.012118	1668.01452	-0.091474	-5.0952E-05	-0.51384	-0.00028621	-0.60531	-0.00033717	557.0117422535487	99.144	0.484	99.144	98.912	99.396	0					103	58	3	0	0	0	0.48558	1	26493	26493		0	0	1	243290	+		40255	22259	23409	23410	48882	48882					0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.29443359375	3	557.012118	1668.01452	-0.032528	-1.8118E-05	-0.042911	-2.3902E-05	-0.075439	-4.202E-05	557.3463443316455	97.968	0.071899	97.968	97.928	98	0					10	7	2	0	0	0	0.33352	1	26206	26206		0	0	1	140950	+		40256	22259	23409	23410	48883	48883					0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.0116577148438	3	557.012118	1668.01452	0.13794	7.6835E-05	-0.9684	-0.00053941	-0.83046	-0.00046258	557.0116746502974	98.207	0.31802	98.268	98.017	98.335	0.061516					58	37	3	0	0	0	0.48558	1	26280	26280		0	0	1	450140	+		40257	22259	23409	23410	48884	48884					0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.0115966796875	3	557.012118	1668.01452	0.13223	7.3653E-05	-0.73677	-0.00041039	-0.60454	-0.00033674	557.0116459242167	98.436	0.31362	98.497	98.327	98.641	0.061516					71	35	3	0	0	0	0.48558	1	26325	26325		0	0	1	545290	+		40258	22259	23409	23410	48885	48885					0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.01171875	3	557.012118	1668.01452	0.12551	6.9909E-05	-0.25142	-0.00014004	-0.12591	-7.0135E-05	557.0117014269606	98.717	0.3656	98.768	98.442	98.808	0.050888					132	44	5	0	0	0	0.48495	2	26424	26392;26424		0.08335	0	1	742320	+		40259	22259	23409	23410	48886;48887	48887					0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.012451171875	3	557.012118	1668.01452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.661	1	96.732	96.232	97.232	0.070465								0	0	0	0.3823	1	25843	25843		0	0	1		+		40260	22259	23409	23410	48888	48888					0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.0111694335938	3	557.012118	1668.01452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.863	1	96.934	96.434	97.434	0.070465								0	0	0	0.3823	1	25905	25905		0	0	1		+		40261	22259	23409	23410	48889	48889					0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.345703125	3	557.012118	1668.01452	0.13794	7.6835E-05	-0.9684	-0.00053941	-0.83046	-0.00046258	557.0116746502974	98.207	0.31802	98.268	98.017	98.335	0.061516					58	37	3	0	0	0	0.33352	1	26290	26290		0	0	1	450140	+		40262	22259	23409	23410	48890	48890					0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3463134765625	3	557.012118	1668.01452	0.13223	7.3653E-05	-0.73677	-0.00041039	-0.60454	-0.00033674	557.0116459242167	98.436	0.31362	98.497	98.327	98.641	0.061516					71	35	3	0	0	0	0.33352	1	26357	26357		0.08335	0	1	545290	+		40263	22259	23409	23410	48891	48891					0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3463134765625	3	557.012118	1668.01452	0.12551	6.9909E-05	-0.25142	-0.00014004	-0.12591	-7.0135E-05	557.0117014269606	98.717	0.3656	98.768	98.442	98.808	0.050888					132	44	5	0	0	0	0.33352	1	26357	26357		0.08335	0	1	742320	+		40264	22259	23409	23410	48892	48892					0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3462524414062	3	557.012118	1668.01452	0.22062	0.00012289	-0.51629	-0.00028758	-0.29567	-0.00016469	557.0116054754658	98.631	0.76753	98.624	98.156	98.924	-0.006897					268	87	5	0	0	0	0.48495	5	26403	26368;26403;26413;26449;26481		0.08335	0	1	728080	+		40265	22259	23409	23410	48893;48894;48895;48896;48897	48894					0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.0115966796875	3	557.012118	1668.01452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.284	1	98.277	97.777	98.777	-0.0068283								0	0	0	0.38223	1	26329	26329		0.08335	0	1		+		40266	22259	23409	23410	48898	48898					0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3462524414062	3	557.012118	1668.01452	0.22062	0.00012289	-0.51629	-0.00028758	-0.29567	-0.00016469	557.0116054754658	98.631	0.76753	98.624	98.156	98.924	-0.006897					268	87	5	0	0	0	0.33352	1	26403	26403		0.08335	0	1	728080	+		40267	22259	23409	23410	48899	48899					0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	557.012118	1668.01452	-0.046803	-2.607E-05	-0.80094	-0.00044613	-0.84774	-0.0004722	557.0117310311506	98.257	0.036713	98.257	98.224	98.261	0	0.10213	0.00025855	NaN	0	10	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196720	+		40268	22259	23409	23410							0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	557.012118	1668.01452	-0.078249	-4.3586E-05	-0.60424	-0.00033657	-0.68249	-0.00038015	557.0118267038341	98.849	0.10421	98.849	98.808	98.912	0	-0.10786	0.00036076	NaN	0	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191960	+		40269	22259	23409	23410							0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	557.012118	1668.01452	-0.063047	-3.5118E-05	-0.52158	-0.00029053	-0.58463	-0.00032564	557.0116634568896	98.522	0.4814	98.522	98.334	98.815	0	-0.025956	3.6889E-05	NaN	0.08335	107	53	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	401440	+		40270	22259	23409	23410							0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	557.012118	1668.01452	-0.091474	-5.0952E-05	-0.51384	-0.00028621	-0.60531	-0.00033717	557.0117422535487	99.144	0.484	99.144	98.912	99.396	0	0.18808	-0.00016035	NaN	0.08335	103	58	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243290	+		40271	22259	23409	23410							0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	557.012118	1668.01452	0.11337	6.3151E-05	-0.68127	-0.00037948	-0.5679	-0.00031633	557.0116925836978	98.942	0.54365	98.993	98.808	99.351	0.050888	0.035535	0.00023204	NaN	0	181	71	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	659370	+		40272	22259	23409	23410							0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	557.012118	1668.01452	0.24275	0.00013521	-0.95805	-0.00053365	-0.71531	-0.00039843	557.0115845360596	97.946	0.35604	97.939	97.691	98.047	-0.0068283	-0.21551	-3.9857E-06	NaN	0	56	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164100	+		40273	22259	23409	23410							0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	557.012118	1668.01452	0.20429	0.00011379	-0.89722	-0.00049976	-0.69293	-0.00038597	557.0116024577213	99.036	0.9057	99.029	98.864	99.769	-0.006897	0.072322	-0.00012881	NaN	0	302	116	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	625340	+		40274	22259	23409	23410							0.20723722290404112
RRWRRRKKRDR	11	Unmodified	_RRWRRRKKRDR_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	557.012118	1668.01452	0.23718	0.00013211	-0.84662	-0.00047158	-0.60944	-0.00033947	557.0114803821411	98.089	0.097641	98.082	98.027	98.124	-0.0068207	0.057116	-0.00082102	NaN	0	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231550	+		40275	22259	23409	23410							0.20723722290404112
RRWRRRRRRL	10	Unmodified	_RRWRRRRRRL_					0	0	0		ENST00000492275.5_1_21:38445580-38480706:+|nuORF;ENST00000355666.5_1_21:38445580-38459609:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.001220703125	3	523.001553	1565.98283	0.07204	3.7677E-05	-0.24566	-0.00012848	-0.17362	-9.0805E-05	523.0012979540224	105.67	0.65144	105.67	105.3	105.96	0					263	93	4	0	0	0	0.41815	2	27972	27933;27972		0.13989	0.13989	1	951890			40276	9610	23410	23411	48900;48901	48901					0.2224777432713836
RRWRRRRRRL	10	Unmodified	_RRWRRRRRRL_					0	0	0		ENST00000492275.5_1_21:38445580-38480706:+|nuORF;ENST00000355666.5_1_21:38445580-38459609:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.0013427734375	3	523.001553	1565.98283	0.21107	0.00011039	-0.36941	-0.0001932	-0.15834	-8.2813E-05	523.0011894806389	105.64	0.087257	105.64	105.58	105.67	-0.0027847					31	11	3	0	0	0	0.41815	1	27986	27986		0.13989	0.066628	1	584640			40277	9610	23410	23411	48902	48902					0.2224777432713836
RRWRRRRRRL	10	Unmodified	_RRWRRRRRRL_					0	0	0		ENST00000492275.5_1_21:38445580-38480706:+|nuORF;ENST00000355666.5_1_21:38445580-38459609:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	523.001553	1565.98283	0.39511	0.00020664	-0.55361	-0.00028954	-0.1585	-8.2894E-05	523.0011247471051	105.59	0.84185	105.59	105.31	106.15	0.0031738	0.00667	-0.00016023	NaN	0.13989	348	121	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1205500			40278	9610	23410	23411							0.2224777432713836
RRWRVSLR	8	Unmodified	_RRWRVSLR_					0	0	0			REV__ENST00000606082.5_1_2:54198066-54200871:+|nuORF	REV__ENST00000606082.5_1_2:54198066-54200871:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.8333129882812	2	564.84669	1127.67883	0.07777	4.3928E-05	-1.0694	-0.00060406	-0.99165	-0.00056013	564.8459488629528	12.649	0.11731	12.549	12.46	12.578	-0.099291					5	3	2	0	0	0	0.46491	1	192	192		0.69038	0	1	9836.5	+		40279	22658	23411	23412	48903	48903					0.12009579779305568
RRWRVSLR	8	Unmodified	_RRWRVSLR_					0	0	0			REV__ENST00000606082.5_1_2:54198066-54200871:+|nuORF	REV__ENST00000606082.5_1_2:54198066-54200871:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.8323974609375	2	564.84669	1127.67883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.686	1	12.619	12.119	13.119	-0.067496								0	0	0	0.38004	1	200	200		0.69038	0	1		+		40280	22658	23411	23412	48904	48904					0.12009579779305568
RRWTLRVSTP	10	Unmodified	_RRWTLRVSTP_					0	0	0		HOGA1|p.S9Pfs*24|1|0.07|ENSG00000241935|chr10:97584727-97584757|TTCTGTGAGGCAGGGGCTAAGCAGGAGCTTG/-|frameshift_variant	HOGA1|p.S9Pfs*24|1|0.07|ENSG00000241935|chr10:97584727-97584757|TTCTGTGAGGCAGGGGCTAAGCAGGAGCTTG/-|frameshift_variant	HOGA1|p.S9Pfs*24|1|0.07|ENSG00000241935|chr10:97584727-97584757|TTCTGTGAGGCAGGGGCTAAGCAGGAGCTTG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.371337890625	2	636.370195	1270.72584	-0.073532	-4.6793E-05	0.46739	0.00029743	0.39386	0.00025064	636.3709326275925	106.74	0.077797	106.74	106.69	106.77	0					18	11	2	0	0	0	0.38773	1	28194	28194		5.7319	0	1	1171200			40281	12426	23412	23413	48905	48905					0.1013039453980582
RRWTLRVSTP	10	Unmodified	_RRWTLRVSTP_					0	0	0		HOGA1|p.S9Pfs*24|1|0.07|ENSG00000241935|chr10:97584727-97584757|TTCTGTGAGGCAGGGGCTAAGCAGGAGCTTG/-|frameshift_variant	HOGA1|p.S9Pfs*24|1|0.07|ENSG00000241935|chr10:97584727-97584757|TTCTGTGAGGCAGGGGCTAAGCAGGAGCTTG/-|frameshift_variant	HOGA1|p.S9Pfs*24|1|0.07|ENSG00000241935|chr10:97584727-97584757|TTCTGTGAGGCAGGGGCTAAGCAGGAGCTTG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.369873046875	2	636.370195	1270.72584	0.3296	0.00020975	0.20679	0.0001316	0.53639	0.00034134	636.8711579865088	106.75	0.071968	106.74	106.7	106.77	-0.0060425					12	8	2	0	0	0	0.37454	1	28211	28211		8.1555	2.4237	1	1114600			40282	12426	23412	23413	48906	48906					0.1013039453980582
RRWTLRVSTP	10	Unmodified	_RRWTLRVSTP_					0	0	0		HOGA1|p.S9Pfs*24|1|0.07|ENSG00000241935|chr10:97584727-97584757|TTCTGTGAGGCAGGGGCTAAGCAGGAGCTTG/-|frameshift_variant	HOGA1|p.S9Pfs*24|1|0.07|ENSG00000241935|chr10:97584727-97584757|TTCTGTGAGGCAGGGGCTAAGCAGGAGCTTG/-|frameshift_variant	HOGA1|p.S9Pfs*24|1|0.07|ENSG00000241935|chr10:97584727-97584757|TTCTGTGAGGCAGGGGCTAAGCAGGAGCTTG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.3714599609375	2	636.370195	1270.72584	0.54388	0.00034611	0.63027	0.00040109	1.1742	0.0007472	636.3711911093159	106.73	0.065857	106.73	106.7	106.77	0.0050507					15	9	2	0	0	0	0.37133	1	28230	28230		8.7454	3.0136	1	1049900			40283	12426	23412	23413	48907	48907					0.1013039453980582
RRWVLFGSL	9	Unmodified	_RRWVLFGSL_					0	0	0			REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A	REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2800903320312	2	567.33255	1132.65055	0.18651	0.00010581	3.3311	0.0018898	3.5176	0.0019956	567.836957901135	67.682	0.10892	67.666	67.618	67.727	-0.016296					5	3	2	0	0	0	0.23784	1	17007	17007		13.906	6.6168	1	132640	+		40284	13358	23413	23414	48908	48908					0.08952837079391429
RRWWPLLLGL	10	Unmodified	_RRWWPLLLGL_					0	0	0			REV__ENST00000374979.7_2_11:124644802-124670283:-|nuORF	REV__ENST00000374979.7_2_11:124644802-124670283:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.9091491699219	3	437.267909	1308.7819	0.17805	7.7857E-05	-0.10398	-4.5468E-05	0.074073	3.239E-05	437.26784198715296	45.162	1.2523	45.162	44.552	45.805	0					182	45	5	0	0	0	0.3213	1	10025	10025		1.9064	0	1	4340400	+		40285	20469	23414	23415	48909	48909					0.13985647447270821
RRWWPLLLGL	10	Unmodified	_RRWWPLLLGL_					0	0	0			REV__ENST00000374979.7_2_11:124644802-124670283:-|nuORF	REV__ENST00000374979.7_2_11:124644802-124670283:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.26788330078125	3	437.267909	1308.7819	-0.12309	-5.3824E-05	-0.14923	-6.5252E-05	-0.27232	-0.00011908	437.26773201521036	45.995	1.6848	46.055	45.565	47.25	0.059834					200	61	5	0	0	0	0.38522	1	10343	10343		6.1918	0.66855	1	7201400	+		40286	20469	23414	23415	48910	48910					0.13985647447270821
RRYKNSSF	8	Unmodified	_RRYKNSSF_					0	0	0		ENST00000389484.7_1_2:141299361-141299469:-|nuORF	ENST00000389484.7_1_2:141299361-141299469:-|nuORF	ENST00000389484.7_1_2:141299361-141299469:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3004150390625	2	529.280515	1056.54648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.24	1	52.239	51.739	52.739	-0.00080872								0	0	0	0.33122	1	12241	12241		23.148	0.41214	1				40287	10021	23415	23416	48911	48911					0.02046510251852851
RSADLTGLEK	10	Unmodified	_RSADLTGLEK_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2987670898438	2	545.29857	1088.58259	0.32721	0.00017843	-0.10347	-5.6424E-05	0.22374	0.000122	545.2985521505063	25.75	0.40277	25.711	25.5	25.902	-0.038671					20	13	2	0	0	0	0.30441	1	4153	4153		22.775	2.3604	1	223480			40288	7911	23416	23417	48912	48912					0.04183922638026161
RSADLTGLEK	10	Unmodified	_RSADLTGLEK_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2984619140625	2	545.29857	1088.58259	0.38249	0.00020857	-0.498	-0.00027156	-0.11551	-6.2989E-05	545.2984173720633	25.771	0.39904	25.749	25.524	25.923	-0.022238					25	13	3	0	0	0	0.34535	1	4163	4163		13.519	1.278	1	183300			40289	7911	23416	23417	48913	48913					0.04183922638026161
RSAEIFNKK	9	Unmodified	_RSAEIFNKK_					0	0	0		ENSG00000012504|ENST00000392986|NR1H4;nc|ENSG00000012504|Q96RI1|NR1H4;nc|ENSG00000012504|Q96RI1-5|NR1H4;nc|ENSG00000012504|Q96RI1-2|NR1H4;nc|ENSG00000012504|Q96RI1-4|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8117065429688	2	546.811648	1091.60874	0.15171	8.2954E-05	-0.10353	-5.6613E-05	0.048172	2.6341E-05	546.8115347165146	15.118	0.33798	15.118	14.981	15.319	0					28	11	3	0	0	0	0.24247	1	939	939		17.443	6.6187	1	165430			40290	452	23417	23418	48914	48914					0.06660236600191638
RSAEIFNKK	9	Unmodified	_RSAEIFNKK_					0	0	0		ENSG00000012504|ENST00000392986|NR1H4;nc|ENSG00000012504|Q96RI1|NR1H4;nc|ENSG00000012504|Q96RI1-5|NR1H4;nc|ENSG00000012504|Q96RI1-2|NR1H4;nc|ENSG00000012504|Q96RI1-4|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8116455078125	2	546.811648	1091.60874	0.33965	0.00018573	-0.18792	-0.00010276	0.15173	8.2968E-05	546.8114145546798	15.207	0.41653	15.098	14.93	15.347	-0.10981					30	14	3	0	0	0	0.31164	1	991	991		7.1017	3.1573	1	106740			40291	452	23417	23418	48915	48915					0.06660236600191638
RSAEIFNKK	9	Unmodified	_RSAEIFNKK_					0	0	0		ENSG00000012504|ENST00000392986|NR1H4;nc|ENSG00000012504|Q96RI1|NR1H4;nc|ENSG00000012504|Q96RI1-5|NR1H4;nc|ENSG00000012504|Q96RI1-2|NR1H4;nc|ENSG00000012504|Q96RI1-4|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8117065429688	2	546.811648	1091.60874	0.25555	0.00013974	-0.35337	-0.00019323	-0.097825	-5.3492E-05	546.8114695122727	15.249	0.40753	15.184	14.984	15.391	-0.064414					27	13	3	0	0	0	0.26278	1	989	989		14.405	3.5815	1	146000			40292	452	23417	23418	48916	48916					0.06660236600191638
RSAEIFNKK	9	Unmodified	_RSAEIFNKK_					0	0	0		ENSG00000012504|ENST00000392986|NR1H4;nc|ENSG00000012504|Q96RI1|NR1H4;nc|ENSG00000012504|Q96RI1-5|NR1H4;nc|ENSG00000012504|Q96RI1-2|NR1H4;nc|ENSG00000012504|Q96RI1-4|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	ENSG00000012504|ENST00000392986|NR1H4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	546.811648	1091.60874	0.15171	8.2954E-05	-0.10353	-5.6613E-05	0.048172	2.6341E-05	546.8115347165146	15.118	0.33798	15.118	14.981	15.319	0	-0.015668	7.6088E-05	NaN	17.443	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165430			40293	452	23417	23418							0.06660236600191638
RSAEVTLEV	9	Unmodified	_RSAEVTLEV_					0	0	0		nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP;nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.274658203125	2	502.274564	1002.53457	0.16275	8.1743E-05	-0.065851	-3.3075E-05	0.096895	4.8668E-05	502.2745610156885	41.003	1.0584	41.003	40.445	41.504	0					117	38	5	0	0	0	0.0073901	4	8780	8736;8780;8821;8920		83.429	25.707	1	10105000			40294	8473;12955	23418	23419	48917;48918;48919;48920	48918					0.03340848718016787
RSAEVTLEV	9	Unmodified	_RSAEVTLEV_					0	0	0		nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP;nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2746276855469	2	502.274564	1002.53457	0.41328	0.00020758	-0.2786	-0.00013993	0.13468	6.7647E-05	502.27442570153784	40.838	1.0119	40.931	40.502	41.513	0.09267					124	37	5	0	0	0	0.0045319	4	8728	8685;8728;8775;8827		90.135	26.174	1	9657000			40295	8473;12955	23418	23419	48921;48922;48923;48924	48922					0.03340848718016787
RSAEVTLEV	9	Unmodified	_RSAEVTLEV_					0	0	0		nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP;nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2745361328125	2	502.274564	1002.53457	0.20396	0.00010244	-0.019837	-9.9634E-06	0.18412	9.248E-05	502.2745571410304	40.754	1.0007	40.854	40.479	41.48	0.099407					120	36	5	0	0	0	0.0045319	3	8702	8663;8702;8751		90.135	26.174	1	10595000			40296	8473;12955	23418	23419	48925;48926;48927	48926					0.03340848718016787
RSAKTLTPK	9	Unmodified	_RSAKTLTPK_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.3094177246094	2	501.308741	1000.60293	0.027727	1.39E-05	0.80252	0.00040231	0.83025	0.00041621	501.30910060925754	12.853	0.61135	12.754	12.549	13.16	-0.099291					35	20	2	0	0	0	0.22935	2	260	253;260		19.362	6.3195	1	163650			40297	2762	23419	23420	48928;48929	48929					0.10265138088504955
RSAKWRSK	8	Unmodified	_RSAKWRSK_					0	0	0			REV__ENST00000607412.1_1_2:215674965-215675046:+|nuORF	REV__ENST00000607412.1_1_2:215674965-215675046:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.77117919921875	2	509.798875	1017.5832	-0.070416	-3.5898E-05	-1.2933	-0.00065933	-1.3637	-0.00069523	509.7982352417185	13.279	0.26378	13.179	13.042	13.306	-0.09929					16	8	3	0	0	0	0.34419	1	366	366		1.8442	0.36234	1	63576	+		40298	22666	23420	23421	48930	48930					0.07510806868413056
RSAQPLPLKI	10	Unmodified	_RSAQPLPLKI_					0	0	0		ACIN1|p.P817Hfs*53|1|0.19|ENSG00000100813|chr14:23065992-23065998|GATTTGG/-|frameshift_variant;ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1	ACIN1|p.P817Hfs*53|1|0.19|ENSG00000100813|chr14:23065992-23065998|GATTTGG/-|frameshift_variant	ACIN1|p.P817Hfs*53|1|0.19|ENSG00000100813|chr14:23065992-23065998|GATTTGG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.853759765625	2	561.853316	1121.69208	0.00042428	2.3838E-07	0.043609	2.4502E-05	0.044034	2.4741E-05	561.8532761559817	42.332	0.37444	42.332	42.193	42.567	0					22	13	2	0	0	0	0.33327	1	9221	9221		15.739	3.498	1	354190			40299	5	23421	23422	48931	48931					0.13609973048028223
RSASSATQVHK	11	Unmodified	_RSASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3125	2	586.312543	1170.61053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.094	1	12.094	11.594	12.594	0								0	0	0	0.34661	1	24	24		8.9762	0.23084	1				40300	9689	23422	23423	48932	48932					0.032052456181418165
RSASSATQVHK	11	Unmodified	_RSASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3123168945312	2	586.312543	1170.61053	0.0059392	3.4823E-06	0.017725	1.0392E-05	0.023664	1.3875E-05	586.3124464755333	12.126	0.53371	12.03	11.929	12.463	-0.096607					47	20	4	0	0	0	0.2331	1	30	30		28.234	28.234	1	499210			40301	9689	23422	23423	48933	48933					0.032052456181418165
RSASSATQVHK	11	Unmodified	_RSASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3123168945312	2	586.312543	1170.61053	-0.088242	-5.1737E-05	0.027788	1.6292E-05	-0.060454	-3.5445E-05	586.3124805886409	12.129	0.33057	12.061	11.951	12.281	-0.06806					43	14	4	0	0	0	0.37585	1	24	24		14.405	1.3629	1	403220			40302	9689	23422	23423	48934	48934					0.032052456181418165
RSASSATQVHK	11	Unmodified	_RSASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	586.312543	1170.61053	-0.088242	-5.1737E-05	0.027788	1.6292E-05	-0.060454	-3.5445E-05	586.3124805886409	12.129	0.33057	12.061	11.951	12.281	-0.06806	0.015432	5.2405E-06	NaN	28.234	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403220			40303	9689	23422	23423							0.032052456181418165
RSCPLLKTL	9	Unmodified	_RSCPLLKTL_					0	0	0		ENST00000397988.7_1_18:61645690-61649045:+|nuORF	ENST00000397988.7_1_18:61645690-61649045:+|nuORF	ENST00000397988.7_1_18:61645690-61649045:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2853393554688	2	515.807519	1029.60049	-0.035469	-1.8295E-05	1.5464	0.00079762	1.5109	0.00077933	516.3083357283592	27.603	0.42356	27.581	27.382	27.805	-0.021412					41	14	4	0	0	0	0.25323	1	4723	4723		10.074	1.4806	1	139890			40304	10150	23423	23424	48935	48935					0.08686966359209691
RSDGIFRTL	9	Unmodified	_RSDGIFRTL_					0	0	0			REV__ENSG00000153012|ENST00000382114|LGI2	REV__ENSG00000153012|ENST00000382114|LGI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.796142578125	2	532.795998	1063.57744	0.59902	0.00031916	-0.13545	-7.217E-05	0.46357	0.00024699	532.7958021870039	29.01	0.96486	29.01	28.64	29.605	0					77	34	4	0	0	0	0.25112	1	5095	5095		16.149	0	1	877780	+		40305	16606	23424	23425	48936	48936					0.048196635660815446
RSDPPLSGDL	10	Unmodified	_RSDPPLSGDL_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.283447265625	2	528.769645	1055.52474	0.37034	0.00019583	0.63202	0.00033419	1.0024	0.00053002	528.7699877400673	16.291	0.596	16.291	16.063	16.659	0					29	20	2	0	0	0	0.3144	1	1273	1273		13.042	1.5478	1	67951	+		40306	16137	23425	23426	48937	48937					-0.0008033928738768736
RSDTPLIYK	9	Unmodified	_RSDTPLIYK_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8060302734375	2	546.806031	1091.59751	0.15995	8.7461E-05	0.21316	0.00011656	0.37311	0.00020402	546.8061129663574	28.291	1.0818	28.291	27.924	29.006	0					99	37	4	0	0	0	0.00082904	3	4932	4883;4932;4977		124.95	72.685	1	2485700			40307	7846	23426	23427	48938;48939;48940	48939					0.05537414506034111
RSDTPLIYK	9	Unmodified	_RSDTPLIYK_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.80615234375	2	546.806031	1091.59751	0.32904	0.00017992	0.1187	6.4905E-05	0.44774	0.00024483	546.8060535053147	28.295	0.95866	28.29	27.882	28.841	-0.0042572					97	33	4	0	0	0	6.0404E-05	3	4912	4868;4912;4961		147.24	94.972	1	2686400			40308	7846	23426	23427	48941;48942;48943	48942					0.05537414506034111
RSDTPLIYK	9	Unmodified	_RSDTPLIYK_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.80615234375	2	546.806031	1091.59751	0.22351	0.00012222	0.21467	0.00011738	0.43818	0.0002396	546.8060988042105	28.28	1.0169	28.281	27.905	28.922	0.0004673					101	35	4	0	0	0	5.3912E-07	3	4912	4865;4912;4957		159.1	106.83	1	2578800			40309	7846	23426	23427	48944;48945;48946	48945					0.05537414506034111
RSDVSLCNLE	10	Unmodified	_RSDVSLCNLE_					0	0	0		ENSG00000180116|ENST00000324616|C12orf40	ENSG00000180116|ENST00000324616|C12orf40	ENSG00000180116|ENST00000324616|C12orf40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2616577148438	2	568.274238	1134.53392	0.095254	5.4131E-05	0.0056678	3.2209E-06	0.10092	5.7352E-05	568.274228396487	46.299	0.49212	46.364	46.227	46.719	0.065048					31	17	2	0	0	0	0.29092	1	10429	10429		21.537	2.098	1	891630			40310	7167	23427	23428	48947	48947					-0.027963139933717684
RSEGRLLLR	9	Unmodified	_RSEGRLLLR_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG;ENST00000462545.5_1_2:220315649-220329350:+|nuORF	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2946166992188	2	550.338364	1098.66217	0.2664	0.00014661	3.5231	0.0019389	3.7895	0.0020855	550.339666883243	61.736	0.13258	61.736	61.703	61.836	0					6	4	2	0	0	0	0.25938	1	15184	15184		1.8442	0	1	51392			40311	975	23428	23429	48948	48948					0.11679034102712649
RSFFHQHYL	9	Unmodified	_RSFFHQHYL_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;ENST00000462875.1_1_6:31609234-31609708:-|nuORF;nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2087097167969	3	412.208718	1233.60433	0.075844	3.1263E-05	0.076562	3.1559E-05	0.15241	6.2823E-05	412.20874127273174	35.845	0.76274	35.845	35.52	36.282	0					73	27	4	0	0	0	0.1335	1	7178	7178		37.771	14.996	1	527120			40312	8229;12909	23429	23430	48949	48949					-0.0031322782269853633
RSFFHQHYL	9	Unmodified	_RSFFHQHYL_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;ENST00000462875.1_1_6:31609234-31609708:-|nuORF;nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2087707519531	3	412.208718	1233.60433	0.29605	0.00012203	-0.34827	-0.00014356	-0.052223	-2.1527E-05	412.20862927770276	35.697	0.71468	35.779	35.57	36.284	0.082355					58	25	3	0	0	0	0.086462	1	7166	7166		31.636	13.773	1	607830			40313	8229;12909	23429	23430	48950	48950					-0.0031322782269853633
RSFFHQHYL	9	Unmodified	_RSFFHQHYL_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;ENST00000462875.1_1_6:31609234-31609708:-|nuORF;nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.20867919921875	3	412.208718	1233.60433	0.17086	7.0432E-05	-0.048153	-1.9849E-05	0.12271	5.0582E-05	412.2087602871297	35.754	0.57569	35.841	35.537	36.113	0.08625					58	20	4	0	0	0	0.15763	1	7146	7146		22.775	9.2563	1	603420			40314	8229;12909	23429	23430	48951	48951					-0.0031322782269853633
RSFLYLPVQ	9	Unmodified	_RSFLYLPVQ_					0	0	0			REV__Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|154|1|anti-sense	REV__Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|154|1|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8268432617188	2	561.818941	1121.62333	0.43615	0.00024504	3.3578	0.0018865	3.794	0.0021315	561.818902097654	45.797	1.8764	45.862	45.302	47.179	0.065048					219	67	6	0	0	0	0.19747	2	10195	10195;10196		24.021	5.8742	1	13148000	+		40315	22698	23430	23431	48952;48953	48952					0.0673830874829946
RSFNLKRK	8	Unmodified	_RSFNLKRK_					0	0	0			REV__ENSG00000006837|ENST00000265334|CDKL3	REV__ENSG00000006837|ENST00000265334|CDKL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.27685546875	2	524.82235	1047.63015	0.37017	0.00019427	-1.5648	-0.00082124	-1.1946	-0.00062697	524.8215948173204	18.347	0.32027	18.347	18.158	18.479	0					14	10	2	0	0	0	0.33993	1	1897	1897		16.942	4.4107	1	62777	+		40316	13376	23431	23432	48954	48954					0.1082366641956014
RSFPLSSPISK	11	Unmodified	_RSFPLSSPISK_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.3217163085938	2	609.845687	1217.67682	0.054831	3.3438E-05	0.12364	7.5403E-05	0.17847	0.00010884	609.8457220445322	39.745	0.34647	39.745	39.54	39.886	0					20	12	2	0	0	0	0.32774	1	8415	8415		13.519	5.0744	1	102220			40317	2416	23432	23433	48955	48955					0.07669061460183002
RSFPLSSPISK	11	Unmodified	_RSFPLSSPISK_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.3214721679688	2	609.845687	1217.67682	0.26376	0.00016085	-0.29469	-0.00017972	-0.030935	-1.8866E-05	609.8456247032103	39.588	0.33552	39.687	39.481	39.817	0.099407					18	11	2	0	0	0	0.26676	1	8339	8339		37.771	19.398	1	153700			40318	2416	23432	23433	48956	48956					0.07669061460183002
RSFPWQSLEAK	11	Unmodified	_RSFPWQSLEAK_					0	0	0		nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000186523|ENST00000448228|FAM86B1;ENSG00000145002|ENST00000262365|FAM86B2;ENSG00000118894|ENST00000427587|EEF2KMT;ENST00000477247.6_1_3:75480038-75484201:-|nuORF;ENST00000507301.5_1_4:3945015-3957071:-|nuORF;ENST00000531806.5_1_11:67560680-67572784:-|nuORF;ENST00000510565.5_1_4:3945062-3957086:-|nuORF;ENST00000529253.5_1_11:67560680-67572784:-|nuORF;nc|ENSG00000186523|Q8N7N1-2|FAM86B1;ENST00000585975.5_1_16:5140431-5147740:-|nuORF;nc|ENSG00000290994|A6NEL3|FAM86C2P;ENST00000522601.5_1_8:8086126-8093767:+|nuORF	nc|ENSG00000118894|Q96G04-2|EEF2KMT	nc|ENSG00000118894|Q96G04-2|EEF2KMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7705078125	3	450.238455	1347.69353	0.30503	0.00013734	0.064534	2.9056E-05	0.36956	0.00016639	450.57260877753765	48.854	0.77647	48.854	48.358	49.135	0					45	27	2	0	0	0	0.32984	1	11255	11255		8.966	4.5599	1	605190			40319	2848	23433	23434	48957	48957					0.03359562346122402
RSFPWQSLEAK	11	Unmodified	_RSFPWQSLEAK_					0	0	0		nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000186523|ENST00000448228|FAM86B1;ENSG00000145002|ENST00000262365|FAM86B2;ENSG00000118894|ENST00000427587|EEF2KMT;ENST00000477247.6_1_3:75480038-75484201:-|nuORF;ENST00000507301.5_1_4:3945015-3957071:-|nuORF;ENST00000531806.5_1_11:67560680-67572784:-|nuORF;ENST00000510565.5_1_4:3945062-3957086:-|nuORF;ENST00000529253.5_1_11:67560680-67572784:-|nuORF;nc|ENSG00000186523|Q8N7N1-2|FAM86B1;ENST00000585975.5_1_16:5140431-5147740:-|nuORF;nc|ENSG00000290994|A6NEL3|FAM86C2P;ENST00000522601.5_1_8:8086126-8093767:+|nuORF	nc|ENSG00000118894|Q96G04-2|EEF2KMT	nc|ENSG00000118894|Q96G04-2|EEF2KMT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	450.238455	1347.69353	0.31783	0.0001431	-0.057047	-2.5685E-05	0.26078	0.00011741	450.23857312414435	48.835	0.69061	48.88	48.47	49.16	0.044891	0.043053	-0.00014686	NaN	6.3914	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	445660			40320	2848	23433	23434							0.03359562346122402
RSFPWQSLEAK	11	Unmodified	_RSFPWQSLEAK_					0	0	0		nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000186523|ENST00000448228|FAM86B1;ENSG00000145002|ENST00000262365|FAM86B2;ENSG00000118894|ENST00000427587|EEF2KMT;ENST00000477247.6_1_3:75480038-75484201:-|nuORF;ENST00000507301.5_1_4:3945015-3957071:-|nuORF;ENST00000531806.5_1_11:67560680-67572784:-|nuORF;ENST00000510565.5_1_4:3945062-3957086:-|nuORF;ENST00000529253.5_1_11:67560680-67572784:-|nuORF;nc|ENSG00000186523|Q8N7N1-2|FAM86B1;ENST00000585975.5_1_16:5140431-5147740:-|nuORF;nc|ENSG00000290994|A6NEL3|FAM86C2P;ENST00000522601.5_1_8:8086126-8093767:+|nuORF	nc|ENSG00000118894|Q96G04-2|EEF2KMT	nc|ENSG00000118894|Q96G04-2|EEF2KMT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	450.238455	1347.69353	0.23481	0.00010572	0.20585	9.268E-05	0.44066	0.0001984	450.23880249177614	48.744	0.65803	48.776	48.387	49.045	0.032043	-0.060372	0.00020824	NaN	6.3914	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	410740			40321	2848	23433	23434							0.03359562346122402
RSFQRALEL	9	Unmodified	_RSFQRALEL_					0	0	0		nc|ENSG00000168259|Q99615-2|DNAJC7;ENSG00000168259|ENST00000457167|DNAJC7	nc|ENSG00000168259|Q99615-2|DNAJC7	nc|ENSG00000168259|Q99615-2|DNAJC7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3292846679688	2	560.317097	1118.61964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.869	1	38.961	38.461	39.461	0.09267								0	0	0	0.15832	1	8145	8145		32.786	3.7041	1				40322	6259	23434	23435	48958	48958					0.06507638974449037
RSFSLGVPR	9	Unmodified	_RSFSLGVPR_					0	0	0		ENSG00000111639|ENST00000229238|MRPL51	ENSG00000111639|ENST00000229238|MRPL51	ENSG00000111639|ENST00000229238|MRPL51	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7932434082031	2	509.793258	1017.57196	0.65717	0.00033502	-2.8597	-0.0014579	-2.2025	-0.0011228	509.7930776184361	36.321	0.6203	36.407	36.113	36.733	0.08625					45	21	3	0	0	0	0.011693	1	7341	7341		76.825	15.467	1	251080			40323	2372	23435	23436	48959	48959					0.06387984774278266
RSFSLGVPR	9	Unmodified	_RSFSLGVPR_					0	0	0		ENSG00000111639|ENST00000229238|MRPL51	ENSG00000111639|ENST00000229238|MRPL51	ENSG00000111639|ENST00000229238|MRPL51	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	509.793258	1017.57196	0.4341	0.0002213	-0.24125	-0.00012299	0.19285	9.8313E-05	509.793183342592	36.252	0.50387	36.334	36.117	36.621	0.082359	-0.036624	0.00019685	NaN	76.825	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271860			40324	2372	23435	23436							0.06387984774278266
RSFVDTLSF	9	Unmodified	_RSFVDTLSF_					0	0	0		ENST00000396355.5_1_16:15818543-15818645:+|nuORF	ENST00000396355.5_1_16:15818543-15818645:+|nuORF	ENST00000396355.5_1_16:15818543-15818645:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2784423828125	2	536.277106	1070.53966	0.20997	0.0001126	1.914	0.0010265	2.124	0.0011391	536.2786318216785	75.805	2.1366	75.805	74.847	76.983	0					247	77	5	0	0	0	0.012929	5	19486	19421;19463;19486;19536;19582		74.929	22.661	1	45459000			40325	10111	23436	23437	48960;48961;48962;48963;48964	48962					0.007211525806042118
RSFVDTLSF	9	Unmodified	_RSFVDTLSF_					0	0	0		ENST00000396355.5_1_16:15818543-15818645:+|nuORF	ENST00000396355.5_1_16:15818543-15818645:+|nuORF	ENST00000396355.5_1_16:15818543-15818645:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.27880859375	2	536.277106	1070.53966	0.31076	0.00016665	1.722	0.0009235	2.0328	0.0010901	536.278611376595	75.718	1.6753	75.771	74.612	76.288	0.052361					193	60	5	0	0	0	0.019245	3	19474	19409;19426;19474		65.235	23.14	1	42413000			40326	10111	23436	23437	48965;48966;48967	48967					0.007211525806042118
RSFVDTLSF	9	Unmodified	_RSFVDTLSF_					0	0	0		ENST00000396355.5_1_16:15818543-15818645:+|nuORF	ENST00000396355.5_1_16:15818543-15818645:+|nuORF	ENST00000396355.5_1_16:15818543-15818645:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.277099609375	2	536.277106	1070.53966	0.48596	0.00026061	1.7766	0.00095274	2.2625	0.0012133	536.278513275011	75.83	2.2343	75.799	74.726	76.96	-0.031487					260	82	5	0	0	0	0.012929	5	19451	19415;19435;19451;19485;19533		74.929	28.908	1	48523000			40327	10111	23436	23437	48968;48969;48970;48971;48972	48970					0.007211525806042118
RSGRTKGGIVF	11	Unmodified	_RSGRTKGGIVF_					0	0	0			REV__ENSG00000182359|ENST00000531837|KBTBD3	REV__ENSG00000182359|ENST00000531837|KBTBD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3432006835938	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.116	1	81.09	80.59	81.59	-0.026825								0	0	0	0.36137	1	21098	21098		5.7319	0	1		+		40328	18194	23437	23438	48973	48973					0.09147016757128767
RSIDKPLAR	9	Unmodified	_RSIDKPLAR_					0	0	0		ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	ENST00000456324.5_1_19:36726911-36727052:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3180541992188	2	528.31964	1054.62473	0.22756	0.00012023	-0.48226	-0.00025479	-0.25469	-0.00013456	528.3191505043022	17.271	0.32233	17.154	16.909	17.231	-0.11739					20	11	2	0	0	0	0.26068	1	1596	1596		3.2813	0.28607	1	31330			40329	10697	23438	23439	48974	48974					0.09959942837076596
RSIDLTVKL	9	Unmodified	_RSIDLTVKL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8248291015625	2	522.824224	1043.63389	0.80041	0.00041847	-0.00067265	-3.5168E-07	0.79974	0.00041812	522.8241540688944	46.975	0.53887	46.975	46.789	47.328	0					38	18	3	0	0	0	0.053792	1	10644	10644		51.488	16.556	1	973930			40330	2674	23439	23440	48975	48975					0.11382291402765077
RSIDLTVKL	9	Unmodified	_RSIDLTVKL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.82470703125	2	522.824224	1043.63389	0.46531	0.00024328	0.55507	0.0002902	1.0204	0.00053348	522.8244013566471	46.961	0.53356	47.013	46.737	47.271	0.052574					44	19	3	0	0	0	0.053792	1	10616	10616		51.488	16.556	1	976710			40331	2674	23439	23440	48976	48976					0.11382291402765077
RSIDLTVKL	9	Unmodified	_RSIDLTVKL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.824224	1043.63389	0.92367	0.00048292	-0.0070888	-3.7062E-06	0.91658	0.00047921	522.824155767957	46.964	0.53784	47.018	46.796	47.334	0.054375	0.01591	-0.00020357	NaN	51.488	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	834130			40332	2674	23439	23440							0.11382291402765077
RSIEKSNSV	9	Unmodified	_RSIEKSNSV_					0	0	0		nc|ENSG00000130592|P33241-2|LSP1;ENST00000485341.5_1_11:1902588-1908790:+|nuORF;ENSG00000130592|ENST00000311604|LSP1;nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-2|LSP1	nc|ENSG00000130592|P33241-2|LSP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2778625488281	2	510.277638	1018.54072	-0.093937	-4.7934E-05	-0.060076	-3.0655E-05	-0.15401	-7.859E-05	510.2777304547619	13.962	0.91582	13.858	13.538	14.454	-0.10466					95	31	5	0	0	0	0.09758	1	555	555		38.615	10.12	1	2302400			40333	3490	23440	23441	48977	48977					0.032193669495200083
RSIEYSPQL	9	Unmodified	_RSIEYSPQL_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.7881469726562	2	546.787838	1091.56112	0.42138	0.00023041	0.013949	7.6274E-06	0.43533	0.00023804	546.7877630569318	42.952	0.79303	42.952	42.595	43.388	0					58	28	3	0	0	0	0.063898	2	9369	9369;9381		47.732	7.7823	1	1044400			40334	4464	23441	23442	48978;48979	48978					0.019005376093446102
RSIEYSPQL	9	Unmodified	_RSIEYSPQL_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.7880249023438	2	546.787838	1091.56112	0.41258	0.0002256	-0.17286	-9.4517E-05	0.23972	0.00013108	546.7877750008194	42.72	0.70136	42.805	42.434	43.135	0.085197					59	25	3	0	0	0	0.073988	1	9312	9312		43.982	18.583	1	1204600			40335	4464	23441	23442	48980	48980					0.019005376093446102
RSIEYSPQL	9	Unmodified	_RSIEYSPQL_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7882080078125	2	546.787838	1091.56112	0.39892	0.00021812	-0.13812	-7.552E-05	0.2608	0.0001426	546.7878436823814	42.621	0.8497	42.712	42.324	43.173	0.091362					67	30	3	0	0	0	0.053988	1	9269	9269		51.415	15.288	1	1077200			40336	4464	23441	23442	48981	48981					0.019005376093446102
RSIIFANYI	9	Unmodified	_RSIIFANYI_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.81103515625	2	548.811116	1095.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.608	1	64.701	64.201	65.201	0.09288								0	0	0	0.10252	1	16062	16062		45.74	15.103	1				40337	1226	23442	23443	48982	48982					0.06370022231271832
RSIIFANYI	9	Unmodified	_RSIIFANYI_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENST00000498762.1_1_X:55748624-55758085:+|nuORF	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.81103515625	2	548.811116	1095.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.683	1	64.673	64.173	65.173	-0.0095291								0	0	0	0.055092	1	16081	16081		59.368	28.1	1				40338	1226	23442	23443	48983	48983					0.06370022231271832
RSIMGPMVIF	10	Unmodified	_RSIMGPMVIF_					0	0	0			REV__ENSG00000117834|ENST00000438567|SLC5A9	REV__ENSG00000117834|ENST00000438567|SLC5A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7923583984375	2	575.809205	1149.60386	0.26825	0.00015446	1.8562	0.0010688	2.1244	0.0012233	575.810162587531	73.075	0.68208	73.129	72.843	73.525	0.053841					30	24	2	0	0	0	0.30586	1	18645	18645		13.906	0	1	104510	+		40339	14992	23443	23444	48984	48984					0.03503893141555636
RSIQVDGKTIK	11	Unmodified	_RSIQVDGKTIK_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.8692626953125	2	622.869694	1243.72483	0.0951	5.9235E-05	0.066251	4.1266E-05	0.16135	0.0001005	622.8695932012859	23.228	0.25932	23.228	23.077	23.336	0					15	8	2	0	0	0	0.4709	1	3402	3402		2.086	1.1237	1	46037			40340	1852	23444	23445	48985	48985					0.11272135380227155
RSIQVDGKTIK	11	Unmodified	_RSIQVDGKTIK_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.5821228027344	3	415.582221	1243.72483	-0.24484	-0.00010175	-0.17456	-7.2544E-05	-0.4194	-0.0001743	415.5821511418142	23.212	0.933	23.212	22.736	23.669	0					107	32	5	0	0	0	0.11198	1	3433	3433		39.111	20.771	1	1191500			40341	1852	23444	23445	48986	48986					0.11272135380227155
RSIQVDGKTIK	11	Unmodified	_RSIQVDGKTIK_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	622.869694	1243.72483	-0.093292	-5.8108E-05	0.075125	4.6793E-05	-0.018167	-1.1315E-05	622.8696581871867	23.327	0.24416	23.24	23.108	23.353	-0.087608	-0.0036662	0.00010397	NaN	2.086	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56056			40342	1852	23444	23445							0.11272135380227155
RSIQVDGKTIK	11	Unmodified	_RSIQVDGKTIK_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;ENST00000598706.1_1_19:8455252-8465174:+|nuORF	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	622.869694	1243.72483	0.17384	0.00010828	-0.163	-0.00010152	0.010845	6.7549E-06	622.8694487750433	23.307	0.33479	23.263	23.109	23.444	-0.044867	0.019234	-0.00019267	NaN	2.086	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58659			40343	1852	23444	23445							0.11272135380227155
RSKELLYKEVY	11	Unmodified	_RSKELLYKEVY_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.6015319824219	3	476.601282	1426.78202	0.31755	0.00015134	-0.28092	-0.00013389	0.036629	1.7457E-05	476.60100047415415	51.287	0.55942	51.287	51.006	51.565	0					71	20	5	0	0	0	0.40129	1	11946	11946		11.065	5.1971	1	2119400	+		40344	22330	23445	23446	48987	48987					0.08569557865939714
RSKELLYKEVY	11	Unmodified	_RSKELLYKEVY_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.6013488769531	3	476.601282	1426.78202	0.29156	0.00013896	-0.2839	-0.00013531	0.0076543	3.6481E-06	476.60105452328634	51.292	0.52428	51.338	51.037	51.561	0.046577					64	19	4	0	0	0	0.40129	1	11930	11930		11.065	2.3135	1	2087400	+		40345	22330	23445	23446	48988	48988					0.08569557865939714
RSKELLYKEVY	11	Unmodified	_RSKELLYKEVY_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	476.601282	1426.78202	0.31755	0.00015134	-0.28092	-0.00013389	0.036629	1.7457E-05	476.60100047415415	51.287	0.55942	51.287	51.006	51.565	0	-0.078633	6.8223E-05	NaN	11.065	71	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2119400	+		40346	22330	23445	23446							0.08569557865939714
RSKELLYKEVY	11	Unmodified	_RSKELLYKEVY_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	476.601282	1426.78202	0.29156	0.00013896	-0.2839	-0.00013531	0.0076543	3.6481E-06	476.60105452328634	51.292	0.52428	51.338	51.037	51.561	0.046577	-0.027046	6.3955E-05	NaN	11.065	64	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2087400	+		40347	22330	23445	23446							0.08569557865939714
RSKELLYKEVY	11	Unmodified	_RSKELLYKEVY_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	476.601282	1426.78202	0.31481	0.00015004	-2.1691	-0.0010338	-1.8543	-0.00088375	476.59956203801704	51.462	0.71376	51.471	51.145	51.859	0.0095673	0.10568	-0.0026315	NaN	11.065	68	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2050400	+		40348	22330	23445	23446							0.08569557865939714
RSKGVKGK	8	Unmodified	_RSKGVKGK_					0	0	0			REV__ENSG00000108592|ENST00000427159|FTSJ3	REV__ENSG00000108592|ENST00000427159|FTSJ3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.26885986328125	2	430.277244	858.539935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.951	1	45.951	45.451	46.451	0								0	0	0	0.37078	1	10313	10313		5.2307	0.47466	1		+		40349	14604	23446	23447	48989	48989					0.1050061709113379
RSKIITYI	8	Unmodified	_RSKIITYI_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.75140380859375	2	497.30821	992.601866	0.12377	6.155E-05	-0.23537	-0.00011705	-0.1116	-5.5501E-05	497.3080502268018	15.36	0.43677	15.36	15.154	15.591	0					20	14	2	0	0	0	0.34437	1	949	949		0.69038	0	1	28817			40350	814	23447	23448	48990	48990					0.105269237196012
RSKKIQIP	8	Unmodified	_RSKKIQIP_					0	0	0			REV__ENST00000475405.2_1_2:74274397-74300767:+|nuORF	REV__ENST00000475405.2_1_2:74274397-74300767:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7744445800781	2	485.313826	968.613099	-0.093777	-4.5511E-05	0.50263	0.00024393	0.40886	0.00019842	485.3138611578024	13.674	0.25517	13.674	13.567	13.822	0					13	8	2	0	0	0	0.344	1	520	520		2.5775	0	1	42118	+		40351	18510	23448	23449	48991	48991					0.12753745813768091
RSKLNCNWT	9	Unmodified	_RSKLNCNWT_					0	0	0			REV__ENST00000282406.8_1_2:43919761-43921576:+|nuORF	REV__ENST00000282406.8_1_2:43919761-43921576:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2798461914062	2	561.279657	1120.54476	0.31764	0.00017828	0.10271	5.7651E-05	0.42035	0.00023594	561.2796371465209	20.365	1.1446	20.365	19.768	20.912	0					108	41	4	0	0	0	0.34681	1	2446	2446		1.8442	0	1	827250	+		40352	19718	23449	23450	48992	48992					-0.010688668284274172
RSLARRAALPT	11	Unmodified	_RSLARRAALPT_					0	0	0		ENST00000490362.1_1_2:217498183-217525611:+|nuORF	ENST00000490362.1_1_2:217498183-217525611:+|nuORF	ENST00000490362.1_1_2:217498183-217525611:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3878784179688	2	606.370195	1210.72584	0.27047	0.000164	-0.8241	-0.00049971	-0.55363	-0.0003357	606.3700987533368	101.35	0.23772	101.38	101.19	101.42	0.027214					45	30	3	0	0	0	0.33251	1	27001	27001		8.4443	5.163	1	94524			40353	11160	23450	23451	48993	48993					0.12890394539772387
RSLARRAALPT	11	Unmodified	_RSLARRAALPT_					0	0	0		ENST00000490362.1_1_2:217498183-217525611:+|nuORF	ENST00000490362.1_1_2:217498183-217525611:+|nuORF	ENST00000490362.1_1_2:217498183-217525611:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	606.370195	1210.72584	0.27617	0.00016746	0.11526	6.989E-05	0.39143	0.00023735	606.3702988552589	101.21	0.25035	101.2	101.09	101.34	-0.0054703	-0.090011	0.00043088	NaN	8.4443	49	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112260			40354	11160	23450	23451							0.12890394539772387
RSLDDALKL	9	Unmodified	_RSLDDALKL_					0	0	0		nc|ENSG00000228716|P00374-2|DHFR;ENSG00000228716|ENST00000439211|DHFR;ENSG00000178700|ENST00000314636|DHFR2	nc|ENSG00000228716|P00374-2|DHFR	nc|ENSG00000228716|P00374-2|DHFR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.7982788085938	2	515.798206	1029.58186	0.35508	0.00018315	-0.040427	-2.0852E-05	0.31466	0.0001623	515.7981480234344	44.598	0.62867	44.673	44.333	44.962	0.075047					41	22	2	0	0	0	0.17555	1	9906	9906		27.223	0.95509	1	534620			40355	7070	23451	23452	48994	48994					0.06825127988986424
RSLDDALKL	9	Unmodified	_RSLDDALKL_					0	0	0		nc|ENSG00000228716|P00374-2|DHFR;ENSG00000228716|ENST00000439211|DHFR;ENSG00000178700|ENST00000314636|DHFR2	nc|ENSG00000228716|P00374-2|DHFR	nc|ENSG00000228716|P00374-2|DHFR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	515.798206	1029.58186	0.58007	0.0002992	-0.43652	-0.00022516	0.14355	7.4041E-05	515.7980224105108	44.877	0.59359	44.877	44.552	45.146	0	0.14309	-0.00011077	NaN	27.223	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	492390			40356	7070	23451	23452							0.06825127988986424
RSLDDALKL	9	Unmodified	_RSLDDALKL_					0	0	0		nc|ENSG00000228716|P00374-2|DHFR;ENSG00000228716|ENST00000439211|DHFR;ENSG00000178700|ENST00000314636|DHFR2	nc|ENSG00000228716|P00374-2|DHFR	nc|ENSG00000228716|P00374-2|DHFR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	515.798206	1029.58186	0.35508	0.00018315	-0.040427	-2.0852E-05	0.31466	0.0001623	515.7981480234344	44.598	0.62867	44.673	44.333	44.962	0.075047	-0.061371	0.00029784	NaN	27.223	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	534620			40357	7070	23451	23452							0.06825127988986424
RSLDNFFAK	9	Unmodified	_RSLDNFFAK_					0	0	0		nc|ENSG00000091527|Q9UKY7-2|CDV3;ENSG00000091527|ENST00000264993|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2907104492188	2	549.290548	1096.56654	0.20701	0.00011371	0.078979	4.3382E-05	0.28599	0.00015709	549.2904764104281	41.063	0.72013	41.063	40.662	41.382	0					71	26	3	0	0	0	0.00054549	2	8823	8823;8873		128.57	76.305	1	2346300			40358	1404	23452	23453	48995;48996	48995					0.022122611917893664
RSLDNFFAK	9	Unmodified	_RSLDNFFAK_					0	0	0		nc|ENSG00000091527|Q9UKY7-2|CDV3;ENSG00000091527|ENST00000264993|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2908325195312	2	549.290548	1096.56654	0.62373	0.00034261	-0.12979	-7.1294E-05	0.49394	0.00027131	549.2904292143688	40.654	0.71251	40.747	40.369	41.082	0.09267					66	26	3	0	0	0	3.4202E-05	2	8698	8698;8747		151.48	95.303	1	2840600			40359	1404	23452	23453	48997;48998	48997					0.022122611917893664
RSLDNFFAK	9	Unmodified	_RSLDNFFAK_					0	0	0		nc|ENSG00000091527|Q9UKY7-2|CDV3;ENSG00000091527|ENST00000264993|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	nc|ENSG00000091527|Q9UKY7-2|CDV3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2907104492188	2	549.290548	1096.56654	0.42505	0.00023348	-0.19296	-0.00010599	0.23209	0.00012749	549.2905084802193	40.616	0.81245	40.715	40.368	41.18	0.099407					71	29	3	0	0	0	0.00010651	2	8680	8680;8721		139.78	78.424	1	2953500			40360	1404	23452	23453	48999;49000	48999					0.022122611917893664
RSLEAVIRV	9	Unmodified	_RSLEAVIRV_					0	0	0		ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7	ENST00000459625.5_1_12:48179068-48183703:-|nuORF	ENST00000459625.5_1_12:48179068-48183703:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.8222045898438	2	521.822015	1041.62948	0.30298	0.0001581	0.050406	2.6303E-05	0.35338	0.0001844	521.8219173868123	41.221	0.40293	41.311	41.079	41.482	0.090248					31	14	3	0	0	0	0.17263	1	8877	8877		32.037	8.2477	1	650480			40361	757	23453	23454	49001	49001					0.11032826979840138
RSLEAVIRV	9	Unmodified	_RSLEAVIRV_					0	0	0		ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7	ENST00000459625.5_1_12:48179068-48183703:-|nuORF	ENST00000459625.5_1_12:48179068-48183703:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.822015	1041.62948	0.31597	0.00016488	-0.21222	-0.00011074	0.10375	5.4139E-05	521.8217082624845	41.447	0.27176	41.447	41.199	41.471	0	0.11907	-0.00019293	NaN	32.037	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	843200			40362	757	23453	23454							0.11032826979840138
RSLEAVIRV	9	Unmodified	_RSLEAVIRV_					0	0	0		ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7	ENST00000459625.5_1_12:48179068-48183703:-|nuORF	ENST00000459625.5_1_12:48179068-48183703:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	521.822015	1041.62948	0.31153	0.00016256	-0.12074	-6.3003E-05	0.19079	9.9558E-05	521.8218289048893	41.129	0.43262	41.225	41.015	41.448	0.096626	-0.10237	-9.7458E-05	NaN	32.037	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461030			40363	757	23453	23454							0.11032826979840138
RSLEQFKAIYK	11	Unmodified	_RSLEQFKAIYK_					0	0	0		ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.59771728515625	3	461.597871	1381.77178	-0.11579	-5.3447E-05	0.24926	0.00011506	0.13347	6.1611E-05	461.5979114688832	35.389	0.63221	35.464	35.234	35.867	0.075306					55	22	3	0	0	0	0.042305	1	7074	7074		55.467	45.937	1	861990			40364	804	23454	23455	49002	49002					0.09616994931366207
RSLEQFKAIYK	11	Unmodified	_RSLEQFKAIYK_					0	0	0		ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.5977783203125	3	461.597871	1381.77178	-0.39349	-0.00018163	0.59843	0.00027623	0.20494	9.4602E-05	461.5980025422673	35.362	0.61422	35.44	35.167	35.781	0.077381					58	21	4	0	0	0	0.010398	1	7060	7060		68.83	59.3	1	811890			40365	804	23454	23455	49003	49003					0.09616994931366207
RSLEQFKAIYK	11	Unmodified	_RSLEQFKAIYK_					0	0	0		ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	461.597871	1381.77178	-0.18114	-8.3613E-05	0.2533	0.00011692	0.07216	3.3309E-05	461.5978203811137	35.515	0.76251	35.515	35.17	35.932	0	0.041888	-0.00014864	NaN	68.83	59	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	762270			40366	804	23454	23455							0.09616994931366207
RSLGLALAL	9	Unmodified	_RSLGLALAL_					0	0	0		ENST00000505309.1_1_5:42808281-42808491:-|nuORF;ENST00000510965.1_1_5:42808281-42811941:-|nuORF;ENST00000514218.5_3_5:42808281-42887487:-|nuORF;ENSG00000250722|ENST00000514985|SELENOP	ENST00000505309.1_1_5:42808281-42808491:-|nuORF	ENST00000505309.1_1_5:42808281-42808491:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.29510498046875	2	457.295102	912.575651	0.034123	1.5604E-05	-0.70117	-0.00032064	-0.66705	-0.00030504	457.2951027161086	61.971	1.6803	61.971	61.437	63.117	0					201	62	5	0	0	0	0.016723	2	15281	15233;15281		69.105	10.426	1	9957200			40367	8595	23455	23456	49004;49005	49005					0.11586654548113984
RSLGLALAL	9	Unmodified	_RSLGLALAL_					0	0	0		ENST00000505309.1_1_5:42808281-42808491:-|nuORF;ENST00000510965.1_1_5:42808281-42811941:-|nuORF;ENST00000514218.5_3_5:42808281-42887487:-|nuORF;ENSG00000250722|ENST00000514985|SELENOP	ENST00000505309.1_1_5:42808281-42808491:-|nuORF	ENST00000505309.1_1_5:42808281-42808491:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.295166015625	2	457.295102	912.575651	-0.22953	-0.00010496	-0.41252	-0.00018864	-0.64205	-0.00029361	457.29522534095975	61.846	1.7385	61.943	61.385	63.123	0.096985					175	63	4	0	0	0	0.016723	2	15197	15197;15245		69.105	10.141	1	9843000			40368	8595	23455	23456	49006;49007	49006					0.11586654548113984
RSLGLALAL	9	Unmodified	_RSLGLALAL_					0	0	0		ENST00000505309.1_1_5:42808281-42808491:-|nuORF;ENST00000510965.1_1_5:42808281-42811941:-|nuORF;ENST00000514218.5_3_5:42808281-42887487:-|nuORF;ENSG00000250722|ENST00000514985|SELENOP	ENST00000505309.1_1_5:42808281-42808491:-|nuORF	ENST00000505309.1_1_5:42808281-42808491:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.295166015625	2	457.295102	912.575651	-0.063295	-2.8944E-05	-0.64231	-0.00029372	-0.7056	-0.00032267	457.29513339968594	61.933	1.4827	61.924	61.377	62.86	-0.0085526					171	54	5	0	0	0	0.016723	3	15271	15221;15271;15320		69.105	10.426	1	9408700			40369	8595	23455	23456	49008;49009;49010	49009					0.11586654548113984
RSLGSSPVK	9	Unmodified	_RSLGSSPVK_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.77142333984375	2	465.771991	929.529429	-0.17646	-8.219E-05	-0.46899	-0.00021844	-0.64545	-0.00030063	465.77178428286146	16.004	0.81347	16.004	15.734	16.548	0					54	28	2	0	0	0	0.15763	2	1179	1179;1230		29.841	3.5724	1	274340			40370	6812	23456	23457	49011;49012	49011					0.06184589646045424
RSLGSSPVK	9	Unmodified	_RSLGSSPVK_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7715759277344	2	465.771991	929.529429	-0.18577	-8.6526E-05	-0.36069	-0.000168	-0.54646	-0.00025452	465.77182561422853	16.141	0.8946	16.027	15.692	16.586	-0.11434					55	30	2	0	0	0	0.11201	1	1241	1241		36.506	3.7205	1	303890			40371	6812	23456	23457	49013	49013					0.06184589646045424
RSLGSSPVK	9	Unmodified	_RSLGSSPVK_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.77178955078125	2	465.771991	929.529429	0.06671	3.1072E-05	-0.64016	-0.00029817	-0.57345	-0.0002671	465.7717026595827	16.084	0.77006	16.021	15.756	16.526	-0.062534					46	26	2	0	0	0	0.15763	1	1249	1249		29.841	3.5724	1	384810			40372	6812	23456	23457	49014	49014					0.06184589646045424
RSLLHFFSFAF	11	Unmodified	_RSLLHFFSFAF_					0	0	0			REV__ENST00000498446.1_1_10:93247340-93247547:+|nuORF	REV__ENST00000498446.1_1_10:93247340-93247547:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2712707519531	3	457.91179	1370.71354	0.2342	0.00010724	-0.58536	-0.00026804	-0.35116	-0.0001608	457.911435787666	37.336	0.40205	37.429	37.197	37.599	0.093014					24	14	2	0	0	0	0.3325	1	7608	7608		2.2527	0	1	131910	+		40373	21697	23457	23458	49015	49015					0.04301358076759243
RSLLKEPKDF	10	Unmodified	_RSLLKEPKDF_					0	0	0			REV__ENSG00000006071|ENST00000389817|ABCC8	REV__ENSG00000006071|ENST00000389817|ABCC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.6215209960938	2	616.853512	1231.69247	0.22795	0.00014061	0.38693	0.00023868	0.61488	0.00037929	616.8535927690366	32.675	0.59475	32.729	32.498	33.093	0.054371					27	21	2	0	0	0	0.32095	1	6342	6342		5.7319	3.2334	1	213420	+		40374	13352	23458	23459	49016	49016					0.0858934797722668
RSLLKEPKDF	10	Unmodified	_RSLLKEPKDF_					0	0	0			REV__ENSG00000006071|ENST00000389817|ABCC8	REV__ENSG00000006071|ENST00000389817|ABCC8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	616.853512	1231.69247	0.31506	0.00019435	0.2292	0.00014138	0.54426	0.00033573	616.8536235550584	32.722	0.42909	32.722	32.582	33.011	0	0.0088452	-7.6017E-05	NaN	5.7319	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162580	+		40375	13352	23458	23459							0.0858934797722668
RSLLLKATY	9	Unmodified	_RSLLLKATY_					0	0	0			REV__ENSG00000112182|ENST00000257749|BACH2	REV__ENSG00000112182|ENST00000257749|BACH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2821655273438	2	532.826766	1063.63898	0.34539	0.00018404	0.15374	8.1918E-05	0.49914	0.00026595	532.8269397974681	57.635	0.45795	57.618	57.443	57.901	-0.0172					27	16	2	0	0	0	0.25202	1	13969	13969		10.824	2.2306	1	412500	+		40376	14761	23459	23460	49017	49017					0.1097059526537123
RSLPFPTVL	9	Unmodified	_RSLPFPTVL_					0	0	0		ENSG00000175463|ENST00000542590|TBC1D10C;ENST00000529635.5_1_11:67174176-67177222:+|nuORF;ENST00000526474.1_1_11:67174309-67174885:+|nuORF	ENSG00000175463|ENST00000542590|TBC1D10C	ENSG00000175463|ENST00000542590|TBC1D10C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2552490234375	2	515.30821	1028.60187	-0.15153	-7.8083E-05	0.37347	0.00019245	0.22195	0.00011437	515.3082696240164	65.209	0.69733	65.298	65.006	65.704	0.088882					63	25	3	0	0	0	0.1645	1	16271	16271		33.445	10.709	1	549510			40377	6865	23460	23461	49018	49018					0.08870923719587154
RSLSTEATAM	10	Unmodified	_RSLSTEATAM_					0	0	0			REV__ENST00000479326.1_1_17:33738882-33747336:-|nuORF	REV__ENST00000479326.1_1_17:33738882-33747336:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7632446289062	2	533.763506	1065.51246	0.47008	0.00025091	0.28065	0.0001498	0.75074	0.00040072	533.7635836520816	43.251	0.86714	43.251	42.678	43.545	0					55	31	2	0	0	0	0.14021	1	9456	9456		39.95	9.3132	1	564980	+		40378	21466	23461	23462	49019	49019					-0.017676990220707012
RSLSTEATAM	10	Unmodified	_RSLSTEATAM_					0	0	0			REV__ENST00000479326.1_1_17:33738882-33747336:-|nuORF	REV__ENST00000479326.1_1_17:33738882-33747336:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.763916015625	2	533.763506	1065.51246	0.31373	0.00016746	0.82561	0.00044068	1.1393	0.00060814	533.7639094064215	42.829	1.3404	42.914	41.959	43.299	0.085197					87	48	2	0	0	0	0.11081	2	9258	9258;9414		45.7	12.321	1	687460	+		40379	21466	23461	23462	49020;49021	49020					-0.017676990220707012
RSMEAHNILSK	11	Oxidation (M)	_RSM(Oxidation (M))EAHNILSK_		RSM(1)EAHNILSK		RSM(56)EAHNILSK	0	0	1		nc|ENSG00000160075|Q9NP77-2|SSU72;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.55902099609375	3	434.559199	1300.65577	-0.21797	-9.4721E-05	-0.77896	-0.00033851	-0.99693	-0.00043323	434.558988594084	16.422	0.68716	16.422	16.123	16.81	0					93	23	5	0	0	0	0.039851	1	1332	1332		56.177	26.885	1	970000			40380	5435	23462	23463	49022	49022		655			0.017467280890059556
RSMEAHNILSK	11	Oxidation (M)	_RSM(Oxidation (M))EAHNILSK_		RSM(1)EAHNILSK		RSM(50)EAHNILSK	0	0	1		nc|ENSG00000160075|Q9NP77-2|SSU72;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	nc|ENSG00000160075|Q9NP77-2|SSU72	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.558837890625	3	434.559199	1300.65577	-0.21551	-9.3653E-05	-0.67832	-0.00029477	-0.89383	-0.00038842	434.5590077429021	16.539	0.88975	16.425	16.139	17.029	-0.11434					102	31	6	0	0	0	0.060812	2	1340	1340;1390		50.116	20.825	1	1033600			40381	5435	23462	23463	49023;49024	49023		655			0.017467280890059556
RSNEHIREL	9	Unmodified	_RSNEHIREL_					0	0	0		nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3071899414062	2	577.307261	1152.59997	0.18203	0.00010509	0.084379	4.8713E-05	0.26641	0.0001538	577.3072427668798	16.827	0.46288	16.827	16.659	17.122	0					31	15	3	0	0	0	0.24833	1	1430	1430		16.566	4.9256	1	227300			40382	3038	23463	23464	49025	49025					0.02977262963713656
RSNEHIREL	9	Unmodified	_RSNEHIREL_					0	0	0		nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3070068359375	2	577.307261	1152.59997	0.13035	7.525E-05	-0.0042716	-2.466E-06	0.12607	7.2784E-05	577.3072516651831	16.979	0.62292	16.863	16.609	17.232	-0.11633					40	22	3	0	0	0	0.12765	1	1477	1477		34.222	14.965	1	159970			40383	3038	23463	23464	49026	49026					0.02977262963713656
RSNEHIREL	9	Unmodified	_RSNEHIREL_					0	0	0		nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3074951171875	2	577.307261	1152.59997	0.29336	0.00016936	0.18423	0.00010636	0.47759	0.00027572	577.307259296574	16.824	0.59169	16.762	16.558	17.149	-0.062534					43	21	3	0	0	0	0.12765	1	1440	1440		34.222	20.316	1	206080			40384	3038	23463	23464	49027	49027					0.02977262963713656
RSNNINTLFK	10	Unmodified	_RSNNINTLFK_					0	0	0		ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.833740234375	2	603.833111	1205.65167	0.18327	0.00011067	0.47603	0.00028744	0.6593	0.00039811	603.833436200492	33.536	0.52185	33.603	33.358	33.879	0.066704					34	18	2	0	0	0	0.067194	1	6539	6539		55.249	26.754	1	418110			40385	3192	23464	23465	49028	49028					0.057070066575988676
RSNNINTLFK	10	Unmodified	_RSNNINTLFK_					0	0	0		ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	603.833111	1205.65167	0.72981	0.00044068	-0.075905	-4.5834E-05	0.6539	0.00039485	603.8331921483481	33.68	0.48561	33.68	33.484	33.969	0	0.048205	-0.00027112	NaN	55.249	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368460			40386	3192	23464	23465							0.057070066575988676
RSNNINTLFK	10	Unmodified	_RSNNINTLFK_					0	0	0		ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	603.833111	1205.65167	0.87719	0.00052968	0.10438	6.3028E-05	0.98157	0.0005927	603.8331591686816	33.547	0.49421	33.613	33.38	33.875	0.06636	-0.018913	-5.3396E-05	NaN	55.249	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392060			40387	3192	23464	23465							0.057070066575988676
RSNPYYIVK	9	Unmodified	_RSNPYYIVK_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3140258789062	2	570.314023	1138.61349	0.36531	0.00020834	-0.049431	-2.8191E-05	0.31588	0.00018015	570.3139470845699	29.041	1.4858	29.041	28.578	30.064	0					124	52	4	0	0	0	0.0008224	3	5155	5114;5155;5206		125.04	73.408	1	1969300			40388	2162	23465	23466	49029;49030;49031	49030					0.04973120742943138
RSNPYYIVK	9	Unmodified	_RSNPYYIVK_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3140869140625	2	570.314023	1138.61349	0.35928	0.0002049	-0.078937	-4.5019E-05	0.28034	0.00015988	570.313901260321	28.995	1.3323	29.008	28.616	29.948	0.012266					109	45	4	0	0	0	0.0032746	4	5162	5114;5162;5216;5223		100.09	56.232	1	2359100			40389	2162	23465	23466	49032;49033;49034;49035	49033					0.04973120742943138
RSNPYYIVK	9	Unmodified	_RSNPYYIVK_					0	0	0		ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.3140258789062	2	570.314023	1138.61349	0.10655	6.0767E-05	0.15974	9.1101E-05	0.26629	0.00015187	570.3140425849889	29.012	1.324	29.025	28.619	29.943	0.013474					112	46	4	0	0	0	0.00054549	3	5158	5109;5158;5208		128.57	76.943	1	2288100			40390	2162	23465	23466	49036;49037;49038	49037					0.04973120742943138
RSNWRYKGAN	10	Unmodified	_RSNWRYKGAN_					0	0	0			REV__ENSG00000145975|ENST00000274673|FAM217A	REV__ENSG00000145975|ENST00000274673|FAM217A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.21649169921875	3	417.882894	1250.62685	-0.029389	-1.2281E-05	-0.90404	-0.00037778	-0.93343	-0.00039006	417.88241686531916	18	0.8699	17.882	17.631	18.501	-0.11739					64	29	4	0	0	0	0.3213	1	1960	1960		1.9064	1.2087	1	138510	+		40391	16319	23466	23467	49039	49039					0.011563715748934555
RSNWRYKGAN	10	Unmodified	_RSNWRYKGAN_					0	0	0			REV__ENSG00000145975|ENST00000274673|FAM217A	REV__ENSG00000145975|ENST00000274673|FAM217A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	417.882894	1250.62685	-0.11193	-4.6774E-05	-0.83107	-0.00034729	-0.94301	-0.00039407	417.8824540237655	17.835	0.71103	17.835	17.477	18.188	0	-0.066242	1.07E-05	NaN	1.9064	54	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134430	+		40392	16319	23466	23467							0.011563715748934555
RSNWRYKGAN	10	Unmodified	_RSNWRYKGAN_					0	0	0			REV__ENSG00000145975|ENST00000274673|FAM217A	REV__ENSG00000145975|ENST00000274673|FAM217A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	417.882894	1250.62685	-0.047901	-2.0017E-05	-0.78667	-0.00032873	-0.83457	-0.00034875	417.88256091450023	18.045	0.78004	17.986	17.652	18.432	-0.058174	0.085214	6.6371E-05	NaN	1.9064	65	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115640	+		40393	16319	23466	23467							0.011563715748934555
RSPALQNL	8	Unmodified	_RSPALQNL_					0	0	0			REV__ENST00000438190.1_1_6:28954500-28954593:+|nuORF	REV__ENST00000438190.1_1_6:28954500-28954593:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.24908447265625	2	449.758884	897.503215	0.2503	0.00011258	-0.22782	-0.00010246	0.022487	1.0114E-05	449.75867649362664	36.989	1.224	37.076	36.815	38.039	0.08741					111	44	4	0	0	0	0.43043	1	7561	7561		12.532	0.89125	1	1456700	+		40394	21022	23467	23468	49040	49040					0.05036320474550848
RSPFVSLTQ	9	Unmodified	_RSPFVSLTQ_					0	0	0			REV__ENST00000325102.12_2_17:73262571-73262763:-|nuORF	REV__ENST00000325102.12_2_17:73262571-73262763:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7996215820312	2	517.785099	1033.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.1	1	34.1	33.6	34.6	0								0	0	0	0.17427	1	6688	6688		29.082	0	1		+		40395	19992	23468	23469	49041	49041					0.04020858817534645
RSPFVSLTQ	9	Unmodified	_RSPFVSLTQ_					0	0	0			REV__ENST00000325102.12_2_17:73262571-73262763:-|nuORF	REV__ENST00000325102.12_2_17:73262571-73262763:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7996826171875	2	517.785099	1033.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.976	1	34.043	33.543	34.543	0.06636								0	0	0	0.17427	1	6650	6650		29.082	3.6823	1		+		40396	19992	23468	23469	49042	49042					0.04020858817534645
RSPFVSLTQ	9	Unmodified	_RSPFVSLTQ_					0	0	0			REV__ENST00000325102.12_2_17:73262571-73262763:-|nuORF	REV__ENST00000325102.12_2_17:73262571-73262763:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7997436523438	2	517.785099	1033.55564	0.12618	6.5333E-05	-1.556	-0.00080565	-1.4298	-0.00074032	517.7851572589499	33.417	0.88907	33.484	33.158	34.047	0.066704					83	31	5	0	0	0	0.07432	1	6629	6629		43.858	11.553	1	789420	+		40397	19992	23468	23469	49043	49043					0.04020858817534645
RSPRPCLNI	9	Unmodified	_RSPRPCLNI_					0	0	0		nc|ENSG00000047346|Q32MH5-2|ATOSA;ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-3|ATOSA;ENST00000568668.1_1_15:52885687-52897350:-|nuORF	nc|ENSG00000047346|Q32MH5-2|ATOSA	nc|ENSG00000047346|Q32MH5-2|ATOSA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2799072265625	2	528.292568	1054.57058	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.696	1	54.76	54.26	55.26	0.063202								0	0	0	0.21726	1	13008	13008		16.942	3.4344	1				40398	629	23469	23470	49044	49044					0.04548027413852651
RSPSRSRRL	9	Unmodified	_RSPSRSRRL_					0	0	0			REV__ENST00000487773.1_1_2:38972277-38975875:-|nuORF	REV__ENST00000487773.1_1_2:38972277-38975875:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.33447265625	2	557.831237	1113.64792	0.33009	0.00018413	0.036754	2.0502E-05	0.36684	0.00020464	557.830978325442	90.752	0.52471	90.752	90.518	91.043	0					94	40	3	0	0	0	0.25988	1	24128	24128		3.9444	0	1	478650	+		40399	21565	23470	23471	49045	49045					0.09564381674408651
RSPVPDTKAAM	11	Unmodified	_RSPVPDTKAAM_					0	0	0			REV__ENST00000486499.1_1_16:31094827-31095232:-|nuORF	REV__ENST00000486499.1_1_16:31094827-31095232:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8095703125	2	586.808248	1171.60194	0.25487	0.00014956	0.42345	0.00024849	0.67832	0.00039804	586.8082166737614	42.771	2.0214	42.856	41.906	43.927	0.085197					138	73	3	0	0	0	0.23983	1	9091	9091		27.629	1.3607	1	741010	+		40400	21552	23471	23472	49046	49046					0.023005556573025387
RSQEHVEML	9	Unmodified	_RSQEHVEML_					0	0	0		nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1	nc|ENSG00000157106|Q96Q15-3|SMG1	nc|ENSG00000157106|Q96Q15-3|SMG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.7990112304688	2	564.776948	1127.53934	0.12821	7.2407E-05	-0.083637	-4.7236E-05	0.044569	2.5171E-05	564.7767116399718	33.367	0.47009	33.433	33.025	33.495	0.066704					21	16	2	0	0	0	0.26145	1	6337	6337		2.0598	0	1	129970			40401	5279	23472	23473	49047	49047					-0.019325904108654868
RSQEHVEML	9	Unmodified	_RSQEHVEML_					0	0	0		nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1	nc|ENSG00000157106|Q96Q15-3|SMG1	nc|ENSG00000157106|Q96Q15-3|SMG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	564.776948	1127.53934	0.30023	0.00016956	-0.74831	-0.00042263	-0.44808	-0.00025307	564.7765575945231	33.51	0.41474	33.51	33.259	33.674	0	0.038107	-0.00049139	NaN	2.0598	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105880			40402	5279	23472	23473							-0.019325904108654868
RSQLEWAHL	9	Unmodified	_RSQLEWAHL_					0	0	0		ENST00000560518.1_1_15:52472905-52473223:+|nuORF	ENST00000560518.1_1_15:52472905-52473223:+|nuORF	ENST00000560518.1_1_15:52472905-52473223:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8224487304688	2	570.301447	1138.58834	0.29744	0.00016963	-0.00014927	-8.5132E-08	0.29729	0.00016955	570.8030343281198	43.748	0.33824	43.832	43.631	43.97	0.083992					15	12	2	0	0	0	0.25202	1	9565	9565		10.824	0	1	738850			40403	11899	23473	23474	49048	49048					0.0245906594036569
RSQLVLVTK	9	Unmodified	_RSQLVLVTK_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3322143554688	2	522.332216	1042.64988	0.088117	4.6026E-05	0.070644	3.69E-05	0.15876	8.2926E-05	522.3321328982416	28.047	0.54889	28.047	27.84	28.389	0					44	18	3	0	0	0	0.043711	1	4855	4855		55.235	11.462	1	435720			40404	4156	23474	23475	49049	49049					0.13025997639647358
RSQLVLVTK	9	Unmodified	_RSQLVLVTK_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.332275390625	2	522.332216	1042.64988	0.10165	5.3096E-05	0.094633	4.943E-05	0.19629	0.00010253	522.3322217878164	28.047	0.51097	28.043	27.822	28.333	-0.0042572					42	17	3	0	0	0	0.053792	1	4845	4845		51.488	13.312	1	523880			40405	4156	23474	23475	49050	49050					0.13025997639647358
RSQQQLPK	8	Unmodified	_RSQQQLPK_					0	0	0		ENSG00000160741|ENST00000368633|CRTC2	ENSG00000160741|ENST00000368633|CRTC2	ENSG00000160741|ENST00000368633|CRTC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.7953796386719	2	492.78289	983.551228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.688	1	19.572	19.072	20.072	-0.11592								0	0	0	0.37724	1	2312	2312		2.3027	0	1				40406	5482	23475	23476	49051	49051					0.058793943946284344
RSREKRRRRRR	11	Unmodified	_RSREKRRRRRR_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7884521484375	3	538.003622	1610.98904	0.20953	0.00011273	0.71954	0.00038711	0.92907	0.00049984	538.0044137130368	31.463	0.22515	31.505	31.399	31.624	0.042364					9	7	2	0	0	0	0.33352	1	5911	5911		0	0	1	155330			40407	3273	23476	23477	49052	49052					0.20798247767993416
RSRILSPPS	9	Unmodified	_RSRILSPPS_					0	0	0			REV__ENST00000292174.4_1_11:118767763-118768351:+|nuORF	REV__ENST00000292174.4_1_11:118767763-118768351:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.27374267578125	2	506.79854	1011.58253	0.25125	0.00012733	0.29199	0.00014798	0.54324	0.00027531	506.798830989162	26.148	0.43114	26.126	25.897	26.328	-0.022236					24	15	2	0	0	0	0.25431	1	4324	4324		9.3831	0	1	76729	+		40408	19760	23477	23478	49053	49053					0.0771996742871579
RSRMRSIF	8	Unmodified	_RSRMRSIF_					0	0	0		ENST00000397887.7_1_21:46270089-46270197:-|nuORF	ENST00000397887.7_1_21:46270089-46270197:-|nuORF	ENST00000397887.7_1_21:46270089-46270197:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3190307617188	2	526.792735	1051.57092	0.82578	0.00043502	-1.2571	-0.00066225	-0.43134	-0.00022723	526.7924931322436	50.985	0.69291	50.985	50.713	51.406	0					48	25	3	0	0	0	0.31934	1	11790	11790		24.674	14.6	1	391250			40409	10147	23478	23479	49054	49054					0.04719447133720678
RSRPFDVRPP	10	Unmodified	_RSRPFDVRPP_					0	0	0			REV__nc|ENSG00000204580|Q08345-2|DDR1	REV__nc|ENSG00000204580|Q08345-2|DDR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.55560302734375	3	409.563273	1225.66799	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.786	1	17.786	17.286	18.286	0								0	0	0	0.37789	1	1735	1735		3.0723	0.57378	1		+		40410	18953	23479	23480	49055	49055					0.06418132614362548
RSRVDKSRIPA	11	Unmodified	_RSRVDKSRIPA_					0	0	0			REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.8801879882812	2	642.878385	1283.74222	1.0537	0.00067743	2.3493	0.0015103	3.403	0.0021877	642.8793021798949	50.531	0.52793	50.576	50.318	50.846	0.044891					34	18	3	0	0	0	0.40332	1	11726	11726		10.8	0.72558	1	682510	+		40411	16424	23480	23481	49056	49056					0.11169475705901277
RSRVKASSH	9	Unmodified	_RSRVKASSH_					0	0	0			REV__ENSG00000184575|ENST00000332707|XPOT	REV__ENSG00000184575|ENST00000332707|XPOT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8247680664062	2	514.291414	1026.56827	-0.075296	-3.8724E-05	3.4725	0.0017859	3.3972	0.0017471	514.7953893282762	12.967	0.55111	12.868	12.578	13.129	-0.099291					29	18	2	0	0	0	0.26031	1	320	320		3.5965	1.019	1	151910	+		40412	18323	23481	23482	49057	49057					0.0560531500043453
RSSEKLVR	8	Unmodified	_RSSEKLVR_					0	0	0		nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7908020019531	2	487.790715	973.566878	0.24343	0.00011874	0.49529	0.0002416	0.73872	0.00036034	487.7907981143787	74.006	2.99	74.058	73.198	76.188	0.052361					206	107	2	0	0	0	0.45431	1	18802	18802		4.3292	0	1	5281400			40413	3259	23482	23483	49058	49058					0.07903680911670108
RSSGYPLTI	9	Unmodified	_RSSGYPLTI_					0	0	0		ENST00000594207.1_1_19:41774132-41786840:+|nuORF;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1	ENST00000594207.1_1_19:41774132-41786840:+|nuORF	ENST00000594207.1_1_19:41774132-41786840:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2723693847656	2	497.271824	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.245	1	45.245	44.745	45.745	0								0	0	0	0.15548	1	10097	10097		33.445	10.709	1				40414	1965	23483	23484	49059	49059					0.03253169926199462
RSSGYPLTI	9	Unmodified	_RSSGYPLTI_					0	0	0		ENST00000594207.1_1_19:41774132-41786840:+|nuORF;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1	ENST00000594207.1_1_19:41774132-41786840:+|nuORF	ENST00000594207.1_1_19:41774132-41786840:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.2720947265625	2	497.271824	992.529095	0.52653	0.00026183	-0.47295	-0.00023519	0.05358	2.6644E-05	497.27134693746984	45.024	1.3338	45.093	44.378	45.712	0.068569					90	47	3	0	0	0	0.058995	2	10008	10008;10067		49.554	20.473	1	1456900			40415	1965	23483	23484	49060;49061	49060					0.03253169926199462
RSSGYPLTI	9	Unmodified	_RSSGYPLTI_					0	0	0		ENST00000594207.1_1_19:41774132-41786840:+|nuORF;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1	ENST00000594207.1_1_19:41774132-41786840:+|nuORF	ENST00000594207.1_1_19:41774132-41786840:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2721862792969	2	497.271824	992.529095	0.49142	0.00024437	-0.44189	-0.00021974	0.049528	2.4629E-05	497.2714999187508	45.058	1.459	45.133	44.333	45.792	0.075047					129	53	4	0	0	0	0.07944	1	10003	10003		41.956	14.327	1	1503400			40416	1965	23483	23484	49062	49062					0.03253169926199462
RSSIPVYKK	9	Unmodified	_RSSIPVYKK_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3244018554688	2	539.324391	1076.63423	0.40182	0.00021671	-0.048743	-2.6289E-05	0.35308	0.00019042	539.3241890821397	16.75	0.63761	16.75	16.377	17.014	0					45	21	3	0	0	0	0.26278	2	1393	1393;1459		14.405	5.0223	1	219590			40417	1403	23484	23485	49063;49064	49063					0.09897711122607689
RSSIPVYKK	9	Unmodified	_RSSIPVYKK_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.3245849609375	2	539.324391	1076.63423	0.24252	0.0001308	0.26095	0.00014074	0.50347	0.00027154	539.3243025907663	16.854	0.7256	16.74	16.33	17.056	-0.11434					51	25	3	0	0	0	0.30824	1	1426	1426		7.609	0.88579	1	226390			40418	1403	23484	23485	49065	49065					0.09897711122607689
RSSIPVYKK	9	Unmodified	_RSSIPVYKK_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.3244018554688	2	539.324391	1076.63423	0.53445	0.00028824	-0.20517	-0.00011065	0.32928	0.00017759	539.3242262368484	16.752	0.75238	16.69	16.324	17.077	-0.062534					51	26	3	0	0	0	0.26278	1	1427	1427		14.405	5.0223	1	173940			40419	1403	23484	23485	49066	49066					0.09897711122607689
RSSIPVYKK	9	Unmodified	_RSSIPVYKK_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	539.324391	1076.63423	0.24252	0.0001308	0.26095	0.00014074	0.50347	0.00027154	539.3243025907663	16.854	0.7256	16.74	16.33	17.056	-0.11434	0.013074	0.0002741	NaN	14.405	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226390			40420	1403	23484	23485							0.09897711122607689
RSSIRRLSTRR	11	Unmodified	_RSSIRRLSTRR_					0	0	0		ENSG00000266964|ENST00000351325|FXYD1	ENSG00000266964|ENST00000351325|FXYD1	ENSG00000266964|ENST00000351325|FXYD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.2835693359375	3	463.28328	1386.82801	0.1117	5.175E-05	0.53471	0.00024772	0.64641	0.00029947	463.28340793298895	89.167	1.576	89.167	88.302	89.878	0					316	88	5	0	0	0	0.46842	1	23617	23617		2.2527	1.0379	1	1562100			40421	8681	23485	23486	49067	49067					0.1500706061137862
RSSKEGLVV	9	Unmodified	_RSSKEGLVV_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.78509521484375	2	487.785099	973.555644	0.31738	0.00015481	-0.10981	-5.3563E-05	0.20757	0.00010125	487.78500436219247	20.417	0.49322	20.417	20.157	20.65	0					37	17	3	0	0	0	0.23612	1	2501	2501		18.373	5.3306	1	240950			40422	3395	23486	23487	49068	49068					0.06780858817523949
RSSKEGLVV	9	Unmodified	_RSSKEGLVV_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7855224609375	2	487.785099	973.555644	0.52802	0.00025756	-0.12635	-6.1631E-05	0.40167	0.00019593	487.78500013923133	20.544	0.56982	20.434	20.238	20.808	-0.11003					39	20	3	0	0	0	0.19905	1	2565	2565		23.79	5.6434	1	302680			40423	3395	23486	23487	49069	49069					0.06780858817523949
RSSKEGLVV	9	Unmodified	_RSSKEGLVV_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.78472900390625	2	487.785099	973.555644	0.61286	0.00029895	-0.3641	-0.0001776	0.24877	0.00012135	487.78490060238596	20.451	0.4416	20.398	20.254	20.695	-0.05291					38	15	3	0	0	0	0.25714	1	2531	2531		15.248	1.3424	1	284880			40424	3395	23486	23487	49070	49070					0.06780858817523949
RSSKEGLVV	9	Unmodified	_RSSKEGLVV_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	487.785099	973.555644	0.31738	0.00015481	-0.10981	-5.3563E-05	0.20757	0.00010125	487.78500436219247	20.417	0.49322	20.417	20.157	20.65	0	0.0010146	9.2158E-05	NaN	23.79	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240950			40425	3395	23486	23487							0.06780858817523949
RSSKEGLVV	9	Unmodified	_RSSKEGLVV_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	487.785099	973.555644	0.52802	0.00025756	-0.12635	-6.1631E-05	0.40167	0.00019593	487.78500013923133	20.544	0.56982	20.434	20.238	20.808	-0.11003	0.01723	7.6022E-05	NaN	23.79	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302680			40426	3395	23486	23487							0.06780858817523949
RSSKHSQGLR	10	Unmodified	_RSSKHSQGLR_					0	0	0		nc|ENSG00000152583|Q14515-2|SPARCL1;ENSG00000152583|ENST00000282470|SPARCL1	nc|ENSG00000152583|Q14515-2|SPARCL1	nc|ENSG00000152583|Q14515-2|SPARCL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.8214111328125	2	578.320703	1154.62685	0.23055	0.00013333	-1.0196	-0.00058965	-0.78904	-0.00045632	578.3201667999521	80.347	1.3488	80.347	79.953	81.302	0					117	56	3	0	0	0	0.38027	1	20894	20894		7.1017	0.37856	1	231400			40427	5028	23487	23488	49071	49071					0.05572371574908175
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3038940429688	2	523.303655	1044.59276	0.45311	0.00023711	-0.3878	-0.00020293	0.065315	3.418E-05	523.303309180788	76.326	1.9064	76.326	75.649	77.555	0					243	69	5	0	0	0	0.31763	3	19574	19574;19616;19709		6.2058	6.2058	1	3322100			40428	2719	23488	23489	49072;49073;49074	49072					0.07224530363282611
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3037109375	2	523.303655	1044.59276	0.45849	0.00023993	-0.11285	-5.9054E-05	0.34564	0.00018088	523.3034012000127	81.421	1.2615	81.421	80.707	81.968	0					159	57	5	0	0	0	0.29176	1	21192	21192		10.074	10.074	1	1515200			40429	2719	23488	23489	49075	49075					0.07224530363282611
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3037719726562	2	523.303655	1044.59276	0.40746	0.00021322	0.63294	0.00033122	1.0404	0.00054444	523.3035630147534	76.049	1.1371	76.102	75.052	76.189	0.053413					140	41	5	0	0	0	0.29176	1	19576	19576		10.074	5.7447	1	2005200			40430	2719	23488	23489	49076	49076					0.07224530363282611
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2987670898438	2	523.303655	1044.59276	0.35197	0.00018419	-0.31839	-0.00016661	0.033581	1.7573E-05	523.3033075822935	76.328	1.651	76.381	75.944	77.595	0.053413					205	58	5	0	0	0	0.31763	2	19609	19609;19674		6.2058	0.47393	1	2738400			40431	2719	23488	23489	49077;49078	49077					0.07224530363282611
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3036499023438	2	523.303655	1044.59276	0.24256	0.00012693	-0.42969	-0.00022486	-0.18714	-9.793E-05	523.3033251497191	80.829	0.58663	80.894	80.546	81.133	0.065094					46	24	2	0	0	0	0.31763	1	21064	21064		6.2058	6.2058	1	1052300			40432	2719	23488	23489	49079	49079					0.07224530363282611
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3035888671875	2	523.303655	1044.59276	0.15014	7.857E-05	0.16105	8.428E-05	0.3112	0.00016285	523.3035534105047	81.35	1.3643	81.419	80.55	81.915	0.068993					156	62	4	0	0	0	0.31763	1	21108	21108		6.2058	0.47393	1	1894300			40433	2719	23488	23489	49080	49080					0.07224530363282611
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3037109375	2	523.303655	1044.59276	0.61163	0.00032007	-0.42161	-0.00022063	0.19001	9.9435E-05	523.3032721893725	76.409	2.54	76.378	75.059	77.599	-0.031487					355	93	5	0	0	0	0.29176	2	19653	19653;19745		10.074	10.074	1	3309700			40434	2719	23488	23489	49081;49082	49081					0.07224530363282611
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3036499023438	2	523.303655	1044.59276	0.46126	0.00024138	-0.47186	-0.00024693	-0.010598	-5.546E-06	523.3032748975928	80.872	0.5611	80.845	80.597	81.158	-0.026825					59	22	3	0	0	0	0.29176	1	21021	21021		10.074	10.074	1	1098100			40435	2719	23488	23489	49083	49083					0.07224530363282611
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	523.303655	1044.59276	0.45757	0.00023945	-0.50043	-0.00026188	-0.042861	-2.243E-05	523.3032754638701	80.828	0.58231	80.828	80.54	81.123	0	-0.027794	-2.4081E-05	NaN	10.074	70	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	931920			40436	2719	23488	23489							0.07224530363282611
RSSKQLVDI	9	Unmodified	_RSSKQLVDI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	523.303655	1044.59276	0.24256	0.00012693	-0.42969	-0.00022486	-0.18714	-9.793E-05	523.3033251497191	80.829	0.58663	80.894	80.546	81.133	0.065094	0.038536	4.9949E-05	NaN	10.074	46	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1052300			40437	2719	23488	23489							0.07224530363282611
RSSKRQRL	8	Unmodified	_RSSKRQRL_					0	0	0		ENST00000492190.5_1_5:126112854-126113319:+|nuORF;ENST00000460265.5_1_5:126112743-126113319:+|nuORF	ENST00000492190.5_1_5:126112854-126113319:+|nuORF	ENST00000492190.5_1_5:126112854-126113319:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.8074340820312	2	515.815056	1029.61556	-0.22851	-0.00011787	1.5842	0.00081716	1.3557	0.0006993	515.8158902715778	12.22	0.70274	12.152	11.999	12.702	-0.06806					43	26	2	0	0	0	0.45431	1	159	159		4.3292	0	1	796420			40438	10724	23489	23490	49084	49084					0.10193594271413531
RSSQRAVLL	9	Unmodified	_RSSQRAVLL_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3116455078125	2	515.311815	1028.60908	0.26168	0.00013484	-0.38867	-0.00020029	-0.12699	-6.5442E-05	515.3114801461156	24.376	0.53159	24.304	24.024	24.555	-0.072559					40	17	3	0	0	0	0.30459	1	3752	3752		8.1555	1.8014	1	238920			40439	4620	23490	23491	49085	49085					0.09591656320048969
RSSQRAVLL	9	Unmodified	_RSSQRAVLL_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	515.311815	1028.60908	0.077168	3.9766E-05	-0.668	-0.00034423	-0.59083	-0.00030446	515.3111990826629	24.372	0.77348	24.333	24.081	24.855	-0.038927	0.041189	-0.00011631	NaN	8.1555	52	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200220			40440	4620	23490	23491							0.09591656320048969
RSSREEFSGVL	11	Unmodified	_RSSREEFSGVL_					0	0	0		PKHD1|p.K2976R|1|0.08|ENSG00000170927|chr6:51753224-51753224|T/C|missense_variant	PKHD1|p.K2976R|1|0.08|ENSG00000170927|chr6:51753224-51753224|T/C|missense_variant	PKHD1|p.K2976R|1|0.08|ENSG00000170927|chr6:51753224-51753224|T/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.825439453125	2	633.825483	1265.63641	-0.062238	-3.9448E-05	-0.17883	-0.00011335	-0.24107	-0.0001528	633.8252199477857	100.16	0.6366	100.16	99.827	100.46	0					174	83	3	0	0	0	0.46655	1	26719	26719		2.4985	0	1	234360			40441	13048	23491	23492	49086	49086					0.01422095069756324
RSSSVAQVK	9	Unmodified	_RSSSVAQVK_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.76202392578125	2	481.274898	960.535243	-0.14991	-7.2149E-05	-0.25989	-0.00012508	-0.40981	-0.00019723	481.2748201906111	12.917	0.27497	12.917	12.783	13.058	0					20	9	3	0	0	0	0.18479	1	267	267		34.932	9.5328	1	197530			40442	8366	23492	23493	49087	49087					0.05339688157721412
RSSSVAQVK	9	Unmodified	_RSSSVAQVK_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.27484130859375	2	481.274898	960.535243	-0.078782	-3.7916E-05	-0.17864	-8.5975E-05	-0.25742	-0.00012389	481.27481844704226	12.957	0.34007	12.857	12.729	13.069	-0.099291					24	11	3	0	0	0	0.2869	1	291	291		10.8	1.4164	1	224810			40443	8366	23492	23493	49088	49088					0.05339688157721412
RSSSVAQVK	9	Unmodified	_RSSSVAQVK_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7616882324219	2	481.274898	960.535243	-0.14947	-7.1934E-05	0.52886	0.00025453	0.37939	0.00018259	481.2747041621672	12.961	0.31081	12.893	12.763	13.073	-0.067496					25	10	3	0	0	0	0.19905	1	290	290		23.79	1.0535	1	201400			40444	8366	23492	23493	49089	49089					0.05339688157721412
RSSTTKLYL	9	Unmodified	_RSSTTKLYL_					0	0	0		ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.2147827148438	2	534.806031	1067.59751	0.10695	5.7197E-05	-0.15049	-8.0484E-05	-0.043544	-2.3288E-05	534.805907563922	28.102	0.41357	28.102	27.896	28.31	0					22	13	2	0	0	0	0.24848	1	4838	4838		13.906	13.906	1	148560			40445	527	23493	23494	49090	49090					0.06641414506043475
RSSTTKLYL	9	Unmodified	_RSSTTKLYL_					0	0	0		ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	534.806031	1067.59751	0.037049	1.9814E-05	-0.22185	-0.00011864	-0.1848	-9.883E-05	534.8060805424421	28.106	0.42136	28.102	27.912	28.333	-0.0042553	0.0066405	-0.00019269	NaN	13.906	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111020			40446	527	23493	23494							0.06641414506043475
RSSTTKLYL	9	Unmodified	_RSSTTKLYL_					0	0	0		ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	534.806031	1067.59751	0.074744	3.9974E-05	0.42502	0.0002273	0.49976	0.00026728	534.8061542587756	28.082	0.5577	28.083	27.764	28.322	0.00046921	-0.012839	0.00049921	NaN	13.906	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146810			40447	527	23493	23494							0.06641414506043475
RSTVPTPAK	9	Unmodified	_RSTVPTPAK_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000486354.1_1_10:5488686-5494790:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.27734375	2	478.779816	955.545079	-0.043553	-2.0852E-05	-1.0971	-0.00052526	-1.1406	-0.00054611	478.77970485420417	15.102	0.57317	15.037	14.674	15.247	-0.064413					38	19	2	0	0	0	0.25843	1	860	860		5.7319	0	1	172390			40448	6755	23494	23495	49091	49091					0.0655287616308442
RSTVPTPAK	9	Unmodified	_RSTVPTPAK_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000486354.1_1_10:5488686-5494790:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	478.779816	955.545079	-0.12472	-5.9713E-05	-0.88362	-0.00042306	-1.0083	-0.00048277	478.7797884856419	14.917	0.66579	14.917	14.591	15.257	0	-0.050567	-0.00066001	NaN	5.7319	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169520			40449	6755	23494	23495							0.0655287616308442
RSTVPTPAK	9	Unmodified	_RSTVPTPAK_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000486354.1_1_10:5488686-5494790:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	478.779816	955.545079	0.021451	1.027E-05	0.17751	8.4986E-05	0.19896	9.5256E-05	478.77967356037146	15.058	0.6985	14.948	14.587	15.285	-0.10981	-0.019251	0.00035608	NaN	5.7319	34	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125580			40450	6755	23494	23495							0.0655287616308442
RSVEPLAR	8	Unmodified	_RSVEPLAR_					0	0	0		ENST00000273317.4_1_3:45720128-45720437:+|nuORF	ENST00000273317.4_1_3:45720128-45720437:+|nuORF	ENST00000273317.4_1_3:45720128-45720437:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.27197265625	2	464.272158	926.529764	-0.14532	-6.7469E-05	-0.38671	-0.00017954	-0.53203	-0.00024701	464.2720146835603	14.285	0.92924	14.219	13.889	14.818	-0.066068					106	32	6	0	0	0	0.46092	1	783	783		2.0598	0	1	779000			40451	9096	23495	23496	49092	49092					0.06356009365902082
RSVHLGHSK	9	Unmodified	_RSVHLGHSK_					0	0	0		ENST00000409711.1_1_2:101619263-101620675:+|nuORF	ENST00000409711.1_1_2:101619263-101620675:+|nuORF	ENST00000409711.1_1_2:101619263-101620675:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.78839111328125	2	510.788507	1019.56246	-0.03416	-1.7448E-05	0.99606	0.00050877	0.9619	0.00049133	510.7883759514889	12.414	0.44793	12.414	12.303	12.751	0					38	14	4	0	0	0	0.24833	1	122	122		16.566	5.7664	1	107400			40452	10256	23496	23497	49093	49093					0.05346216488760547
RSVHLGHSK	9	Unmodified	_RSVHLGHSK_					0	0	0		ENST00000409711.1_1_2:101619263-101620675:+|nuORF	ENST00000409711.1_1_2:101619263-101620675:+|nuORF	ENST00000409711.1_1_2:101619263-101620675:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.7884826660156	2	510.788507	1019.56246	-0.19679	-0.00010052	-0.5947	-0.00030377	-0.79149	-0.00040429	510.78857248511963	12.419	0.62336	12.351	12.167	12.79	-0.06806					51	20	5	0	0	0	0.30459	1	135	135		8.1555	1.4324	1	95336			40453	10256	23496	23497	49094	49094					0.05346216488760547
RSVIQDFTK	9	Unmodified	_RSVIQDFTK_					0	0	0		ENST00000378278.6_1_10:14976506-14977537:-|nuORF	ENST00000378278.6_1_10:14976506-14977537:-|nuORF	ENST00000378278.6_1_10:14976506-14977537:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.3040161132812	2	547.303655	1092.59276	0.34042	0.00018631	-0.97952	-0.0005361	-0.63911	-0.00034978	547.3028560932229	29.386	0.55013	29.399	29.248	29.798	0.013474					43	18	3	0	0	0	0.07944	1	5254	5254		41.956	11.319	1	233140			40454	9955	23497	23498	49095	49095					0.050165303632638825
RSVIQDFTK	9	Unmodified	_RSVIQDFTK_					0	0	0		ENST00000378278.6_1_10:14976506-14977537:-|nuORF	ENST00000378278.6_1_10:14976506-14977537:-|nuORF	ENST00000378278.6_1_10:14976506-14977537:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	547.303655	1092.59276	0.63204	0.00034592	-0.4059	-0.00022215	0.22614	0.00012377	547.3028161531555	29.423	0.65769	29.423	29.117	29.774	0	0.029075	0.00075179	NaN	41.956	37	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223950			40455	9955	23497	23498							0.050165303632638825
RSVIVIRSL	9	Unmodified	_RSVIVIRSL_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2685546875	2	521.840208	1041.66586	0.48471	0.00025294	0.31544	0.00016461	0.80014	0.00041755	521.8404065040703	36.99	0.46397	37.077	36.841	37.305	0.08741					28	16	2	0	0	0	0.25779	1	7586	7586		3.2813	1.4371	1	180750			40456	3670	23498	23499	49096	49096					0.14669703876552376
RSVPGATGYR	10	Unmodified	_RSVPGATGYR_					0	0	0		ENSG00000114270|ENST00000681320|COL7A1;nc|ENSG00000114270|Q02388-2|COL7A1	ENSG00000114270|ENST00000681320|COL7A1	ENSG00000114270|ENST00000681320|COL7A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2757568359375	2	532.285797	1062.55704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.536	1	93.623	93.123	94.123	0.08667								0	0	0	0.37157	1	24915	24915		5.7319	1.4026	1				40457	2552	23499	23500	49097	49097					0.02826492906274325
RSVPGATGYR	10	Unmodified	_RSVPGATGYR_					0	0	0		ENSG00000114270|ENST00000681320|COL7A1;nc|ENSG00000114270|Q02388-2|COL7A1	ENSG00000114270|ENST00000681320|COL7A1	ENSG00000114270|ENST00000681320|COL7A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8167114257812	2	532.285797	1062.55704	0.36124	0.00019228	1.1367	0.00060504	1.4979	0.00079732	532.2862600057073	91.935	0.45941	92.025	91.808	92.267	0.090668					32	26	2	0	0	0	0.31926	1	24446	24446		5.7319	1.4026	1	132200			40458	2552	23499	23500	49098	49098					0.02826492906274325
RSVQVPLML	9	Oxidation (M)	_RSVQVPLM(Oxidation (M))L_		RSVQVPLM(1)L		RSVQVPLM(42)L	0	0	1		ENSG00000152049|ENST00000281830|KCNE4;nc|ENSG00000152049|Q8WWG9|KCNE4	ENSG00000152049|ENST00000281830|KCNE4	ENSG00000152049|ENST00000281830|KCNE4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.8051147460938	2	529.804977	1057.5954	0.28595	0.0001515	-0.43684	-0.00023144	-0.15089	-7.9944E-05	529.804880262043	53.686	0.70459	53.742	53.535	54.239	0.056259					51	26	3	0	0	0	0.07944	1	12690	12690		41.956	25.013	1	1525600			40459	4996	23500	23501	49099	49099		616			0.0689066249658481
RSVQVPLML	9	Oxidation (M)	_RSVQVPLM(Oxidation (M))L_		RSVQVPLM(1)L		RSVQVPLM(46)L	0	0	1		ENSG00000152049|ENST00000281830|KCNE4;nc|ENSG00000152049|Q8WWG9|KCNE4	ENSG00000152049|ENST00000281830|KCNE4	ENSG00000152049|ENST00000281830|KCNE4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.8051147460938	2	529.804977	1057.5954	0.59708	0.00031633	-0.57298	-0.00030357	0.024095	1.2766E-05	529.8048613448126	53.788	0.61795	53.779	53.531	54.149	-0.0096054					48	22	3	0	0	0	0.069366	1	12728	12728		45.7	25.246	1	1543200			40460	4996	23500	23501	49100	49100		616			0.0689066249658481
RSVTAGIII	9	Unmodified	_RSVTAGIII_					0	0	0		ENST00000368431.7_1_1:154955852-154959962:+|nuORF;nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1	ENST00000368431.7_1_1:154955852-154959962:+|nuORF	ENST00000368431.7_1_1:154955852-154959962:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.29229736328125	2	465.292559	928.570566	-0.3675	-0.000171	-0.22839	-0.00010627	-0.5959	-0.00027727	465.29237476124166	59.932	0.5518	59.932	59.65	60.202	0					38	19	3	0	0	0	0.18208	1	14615	14615		26.268	0	1	549090			40461	5476	23501	23502	49101	49101					0.10342350685539259
RSVTAGIII	9	Unmodified	_RSVTAGIII_					0	0	0		ENST00000368431.7_1_1:154955852-154959962:+|nuORF;nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1	ENST00000368431.7_1_1:154955852-154959962:+|nuORF	ENST00000368431.7_1_1:154955852-154959962:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.29205322265625	2	465.292559	928.570566	-0.47783	-0.00022233	-0.10759	-5.0059E-05	-0.58541	-0.00027239	465.2924412548168	59.824	0.38991	59.919	59.687	60.077	0.095093					23	13	2	0	0	0	0.13748	2	14596	14552;14596		32.786	0	1	604740			40462	5476	23501	23502	49102;49103	49103					0.10342350685539259
RSVTAGIII	9	Unmodified	_RSVTAGIII_					0	0	0		ENST00000368431.7_1_1:154955852-154959962:+|nuORF;nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1	ENST00000368431.7_1_1:154955852-154959962:+|nuORF	ENST00000368431.7_1_1:154955852-154959962:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2926025390625	2	465.292559	928.570566	0.096774	4.5028E-05	-0.66824	-0.00031093	-0.57147	-0.0002659	465.292252433578	59.974	0.54578	59.963	59.652	60.198	-0.011486					27	18	2	0	0	0	0.13748	1	14592	14592		32.786	0	1	595880			40463	5476	23501	23502	49104	49104					0.10342350685539259
RSVVEKLIL	9	Unmodified	_RSVVEKLIL_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8426513671875	2	528.842416	1055.67028	0.40055	0.00021183	-0.028758	-1.5209E-05	0.37179	0.00019662	528.8422408159462	46.182	0.70596	46.182	45.86	46.566	0					54	25	3	0	0	0	0.11813	2	10371	10356;10371		35.612	7.1177	1	1193700			40464	8529;12963	23502	23503	49105;49106	49106					0.14467168299484
RSVVEKLIL	9	Unmodified	_RSVVEKLIL_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8427124023438	2	528.842416	1055.67028	0.14633	7.7387E-05	0.13185	6.9729E-05	0.27819	0.00014712	528.842357809165	46.036	0.57607	46.096	45.819	46.396	0.059837					51	20	4	0	0	0	0.09758	1	10320	10320		38.615	8.7742	1	1243300			40465	8529;12963	23502	23503	49107	49107					0.14467168299484
RSVVEKLIL	9	Unmodified	_RSVVEKLIL_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8427124023438	2	528.842416	1055.67028	0.56873	0.00030077	-0.24237	-0.00012817	0.32637	0.0001726	528.8421529952305	45.997	0.6621	46.062	45.84	46.503	0.065052					49	23	3	0	0	0	0.048637	1	10315	10315		53.404	11.448	1	1313700			40466	8529;12963	23502	23503	49108	49108					0.14467168299484
RSVVSKKKK	9	Unmodified	_RSVVSKKKK_					0	0	0			REV__ENSG00000204186|ENST00000374423|ZDBF2	REV__ENSG00000204186|ENST00000374423|ZDBF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3533935546875	2	530.353483	1058.69241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.96	1	111.96	111.46	112.46	0								0	0	0	0.26734	1	29111	29111		0.45834	0.45834	1		+		40467	18925	23503	23504	49109	49109					0.16541392767908292
RSWRKSEQ	8	Unmodified	_RSWRKSEQ_					0	0	0		ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8008422851562	2	538.783422	1075.55229	0.21855	0.00011775	0.24338	0.00013113	0.46193	0.00024888	538.7833896845896	16.085	0.46586	15.97	15.781	16.247	-0.11434					19	15	2	0	0	0	0.45431	1	1242	1242		4.3292	0	1	41984			40468	4102	23504	23505	49110	49110					0.017536087635107833
RSWRRRWQHR	10	Unmodified	_RSWRRRWQHR_					0	0	0		ENST00000570069.5_1_16:1826945-1827407:+|nuORF;ENST00000561903.6_1_16:1826945-1828699:+|nuORF	ENST00000570069.5_1_16:1826945-1827407:+|nuORF	ENST00000570069.5_1_16:1826945-1827407:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.30230712890625	3	508.615364	1522.82426	0.29694	0.00015103	0.85924	0.00043702	1.1562	0.00058805	508.6157410521199	43.475	0.43412	43.475	43.307	43.741	0					20	15	2	0	0	0	0.32148	1	9628	9628		1.4551	0.24029	1	365400			40469	11916	23505	23506	49111	49111					0.08376435628224499
RSWRRRWQHR	10	Unmodified	_RSWRRRWQHR_					0	0	0		ENST00000570069.5_1_16:1826945-1827407:+|nuORF;ENST00000561903.6_1_16:1826945-1828699:+|nuORF	ENST00000570069.5_1_16:1826945-1827407:+|nuORF	ENST00000570069.5_1_16:1826945-1827407:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	508.615364	1522.82426	0.12637	6.4274E-05	0.43895	0.00022325	0.56532	0.00028753	508.61559844566517	43.063	0.40623	43.149	42.922	43.328	0.085732	-0.1633	-0.00021146	NaN	0.50596	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333060			40470	11916	23505	23506							0.08376435628224499
RSYDYQFRY	9	Unmodified	_RSYDYQFRY_					0	0	0		nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1;nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1	nc|ENSG00000142784|Q8N5D0-5|WDTC1	nc|ENSG00000142784|Q8N5D0-5|WDTC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.59576416015625	3	433.203522	1296.58874	0.01596	6.9138E-06	0.8829	0.00038248	0.89886	0.00038939	433.20406271427396	41.025	1.1262	41.115	40.252	41.378	0.090248					52	41	2	0	0	0	0.25676	1	8803	8803		8.4443	2.2099	1	415890			40471	12733	23506	23507	49112	49112					-0.04769559130431844
RSYHLQIVTK	10	Unmodified	_RSYHLQIVTK_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.5750732421875	3	415.575178	1243.70371	-0.37398	-0.00015542	-0.36435	-0.00015142	-0.73833	-0.00030683	415.5751243500714	27.952	1.4219	27.952	27.53	28.952	0					147	49	5	0	0	0	0.0036858	3	4809	4764;4809;4853		99.318	55.112	1	4595400			40472	3551	23507	23508	49113;49114;49115	49114					0.09160170071368157
RSYHLQIVTK	10	Unmodified	_RSYHLQIVTK_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.8588256835938	2	622.859129	1243.70371	-0.038947	-2.4259E-05	-0.0048219	-3.0033E-06	-0.043769	-2.7262E-05	622.8591581001051	27.972	0.44395	27.972	27.763	28.207	0					33	15	3	0	0	0	0.27616	1	4816	4816		25.997	8.1342	1	188590			40473	3551	23507	23508	49116	49116					0.09160170071368157
RSYHLQIVTK	10	Unmodified	_RSYHLQIVTK_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5750732421875	3	415.575178	1243.70371	-0.077976	-3.2405E-05	-0.63319	-0.00026314	-0.71117	-0.00029554	415.57502890248696	27.933	1.3864	27.929	27.428	28.815	-0.0042572					138	43	6	0	0	0	0.0036858	3	4817	4768;4817;4862		99.318	57.752	1	4720900			40474	3551	23507	23508	49117;49118;49119	49118					0.09160170071368157
RSYHLQIVTK	10	Unmodified	_RSYHLQIVTK_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.8590698242188	2	622.859129	1243.70371	-0.27829	-0.00017333	0.22971	0.00014307	-0.048582	-3.026E-05	622.8592000837709	27.909	0.42978	27.905	27.711	28.14	-0.0042572					33	14	3	0	0	0	0.20981	1	4797	4797		35.08	12.305	1	205710			40475	3551	23507	23508	49120	49120					0.09160170071368157
RSYHLQIVTK	10	Unmodified	_RSYHLQIVTK_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.5751037597656	3	415.575178	1243.70371	-0.20091	-8.3495E-05	-0.53304	-0.00022152	-0.73396	-0.00030501	415.57508069490416	27.896	1.4751	27.897	27.419	28.894	0.0004673					143	48	5	0	0	0	0.0043395	3	4811	4760;4811;4854		95.507	51.301	1	4508800			40476	3551	23507	23508	49121;49122;49123	49122					0.09160170071368157
RSYHLQIVTK	10	Unmodified	_RSYHLQIVTK_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.859375	2	622.859129	1243.70371	-0.23321	-0.00014526	0.074135	4.6175E-05	-0.15908	-9.9083E-05	622.8591070549028	27.921	0.44319	27.922	27.687	28.13	0.0004673					32	15	3	0	0	0	0.31289	2	4772	4772;4826		20.871	9.9722	1	185580			40477	3551	23507	23508	49124;49125	49124					0.09160170071368157
RSYNWHVCYWK	11	Unmodified	_RSYNWHVCYWK_					0	0	0			REV__ABCA1|p.F532Wfs*13|1|0.12|ENSG00000165029|chr9:104831735-104831742|AGCCCAGA/-|frameshift_variant	REV__ABCA1|p.F532Wfs*13|1|0.12|ENSG00000165029|chr9:104831735-104831742|AGCCCAGA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.5748291015625	3	514.575072	1540.70339	-0.15415	-7.9324E-05	0.43627	0.00022449	0.28211	0.00014517	514.5755395367968	18.631	1.5031	18.573	18.199	19.702	-0.058172					172	52	6	0	0	0	0.48486	1	2086	2086		0.094841	0.011491	1	4488900	+		40478	13062	23508	23509	49126	49126					-0.04533572920149709
RSYQGVVQF	9	Unmodified	_RSYQGVVQF_					0	0	0		ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8094482421875	2	542.282723	1082.55089	0.70907	0.00038452	-2.4092	-0.0013064	-1.7001	-0.00092193	542.2812010322183	45.07	0.56168	45.146	44.723	45.284	0.075047					24	20	2	0	0	0	0.14961	1	10019	10019		41.84	1.8823	1	211800			40479	5608	23509	23510	49127	49127					0.012919746747684258
RSYRKQEPSL	10	Unmodified	_RSYRKQEPSL_					0	0	0		ENSG00000137077|ENST00000259607|CCL21	ENSG00000137077|ENST00000259607|CCL21	ENSG00000137077|ENST00000259607|CCL21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.5704650878906	3	421.898321	1262.67313	-0.20454	-8.6296E-05	0.47208	0.00019917	0.26754	0.00011287	421.8984649388996	16.726	0.74367	16.612	16.421	17.165	-0.11434					77	26	5	0	0	0	0.31969	1	1463	1463		5.7834	5.7834	1	465500			40480	4025	23510	23511	49128	49128					0.052303916863365885
RSYSDPPLK	9	Unmodified	_RSYSDPPLK_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.7822265625	2	531.782556	1061.55056	0.33426	0.00017775	-0.89971	-0.00047845	-0.56546	-0.0003007	531.7819767897213	22.484	1.1503	22.484	21.819	22.969	0					88	40	3	0	0	0	0.25622	1	3165	3165		7.2892	0	1	382010			40481	6389	23511	23512	49129	49129					0.022245549548870258
RSYSYFIEV	9	Unmodified	_RSYSYFIEV_					0	0	0		nc|ENSG00000183826|Q96Q07-3|BTBD9;nc|ENSG00000183826|Q96Q07-2|BTBD9;ENSG00000183826|ENST00000481247|BTBD9	nc|ENSG00000183826|Q96Q07-3|BTBD9	nc|ENSG00000183826|Q96Q07-3|BTBD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.2893676757812	2	582.290214	1162.56587	0.074955	4.3645E-05	-1.2757	-0.00074285	-1.2008	-0.00069921	582.2888994588776	59.654	0.90916	59.654	59.241	60.15	0					58	31	3	0	0	0	0.15763	2	14551	14547;14551		29.841	7.1825	1	910300			40482	7412	23512	23513	49130;49131	49131					-0.008905782479359914
RSYSYFIEV	9	Unmodified	_RSYSYFIEV_					0	0	0		nc|ENSG00000183826|Q96Q07-3|BTBD9;nc|ENSG00000183826|Q96Q07-2|BTBD9;ENSG00000183826|ENST00000481247|BTBD9	nc|ENSG00000183826|Q96Q07-3|BTBD9	nc|ENSG00000183826|Q96Q07-3|BTBD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.2905883789062	2	582.290214	1162.56587	0.11693	6.8085E-05	-1.0122	-0.00058938	-0.89526	-0.0005213	582.2889998101692	59.544	0.97129	59.639	59.16	60.131	0.095089					61	34	3	0	0	0	0.19083	1	14464	14464		24.991	2.3329	1	781980			40483	7412	23512	23513	49132	49132					-0.008905782479359914
RSYSYFIEV	9	Unmodified	_RSYSYFIEV_					0	0	0		nc|ENSG00000183826|Q96Q07-3|BTBD9;nc|ENSG00000183826|Q96Q07-2|BTBD9;ENSG00000183826|ENST00000481247|BTBD9	nc|ENSG00000183826|Q96Q07-3|BTBD9	nc|ENSG00000183826|Q96Q07-3|BTBD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.2901000976562	2	582.290214	1162.56587	0.37808	0.00022015	-1.5323	-0.00089227	-1.1543	-0.00067212	582.2888104091427	59.726	0.94662	59.714	59.251	60.198	-0.011486					49	32	2	0	0	0	0.14786	1	14512	14512		31.268	2.7738	1	903260			40484	7412	23512	23513	49133	49133					-0.008905782479359914
RSYVIALTLQF	11	Unmodified	_RSYVIALTLQF_					0	0	0			REV__ENST00000304414.11_1_16:18803691-18803823:-|nuORF	REV__ENST00000304414.11_1_16:18803691-18803823:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.58709716796875	3	437.587084	1309.73942	0.084977	3.7185E-05	-0.27557	-0.00012059	-0.19059	-8.3401E-05	437.5869309103625	53.346	0.47139	53.402	53.193	53.664	0.056255					31	17	2	0	0	0	0.33146	1	12600	12600		4.1166	0	1	778470	+		40485	19844	23513	23514	49134	49134					0.09694207528355037
RSYVPFTLE	9	Unmodified	_RSYVPFTLE_					0	0	0		ENST00000509378.1_1_4:165109658-165109991:+|nuORF	ENST00000509378.1_1_4:165109658-165109991:+|nuORF	ENST00000509378.1_1_4:165109658-165109991:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3131103515625	2	556.292756	1110.57096	0.33606	0.00018695	-0.37007	-0.00020587	-0.034006	-1.8917E-05	556.292653536889	55.579	0.73332	55.579	55.174	55.907	0					62	26	3	0	0	0	0.17277	1	13321	13321		27.629	7.1752	1	1288700			40486	11355	23514	23515	49135	49135					0.02009725614720992
RTAEVLANK	9	Unmodified	_RTAEVLANK_					0	0	0		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.67156982421875	2	501.290548	1000.56654	0.13535	6.7851E-05	-0.11229	-5.6288E-05	0.023065	1.1562E-05	501.29067882534986	15.604	0.53065	15.495	15.312	15.842	-0.10981					26	17	2	0	0	0	0.259	1	1084	1084		5.2969	1.7004	1	49995			40487	276	23515	23516	49136	49136					0.06628261191804086
RTAEYFPTK	9	Unmodified	_RTAEYFPTK_					0	0	0		ENST00000483893.5_1_9:131186485-131189983:+|nuORF;nc|ENSG00000167123|Q5T4B2-2|CERCAM;ENSG00000167123|ENST00000372838|CERCAM	ENST00000483893.5_1_9:131186485-131189983:+|nuORF	ENST00000483893.5_1_9:131186485-131189983:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.789794921875	2	556.790381	1111.56621	0.042177	2.3484E-05	1.8535	0.001032	1.8957	0.0010555	557.2932316283296	25.695	0.60388	25.655	25.266	25.87	-0.039385					44	20	3	0	0	0	0.2869	1	4130	4130		10.8	2.644	1	169520			40488	6152	23516	23517	49137	49137					0.014888414719507637
RTAIIVGGK	9	Unmodified	_RTAIIVGGK_					0	0	0		ENST00000391835.1_1_19:50380055-50380151:-|nuORF	ENST00000391835.1_1_19:50380055-50380151:-|nuORF	ENST00000391835.1_1_19:50380055-50380151:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.78607177734375	2	457.792727	913.5709	0.001217	5.5711E-07	1.0452	0.00047848	1.0464	0.00047904	457.79337389964644	19.806	0.36029	19.806	19.685	20.045	0					40	12	4	0	0	0	0.25049	1	2327	2327		13.615	4.2317	1	131790			40489	10026	23517	23518	49138	49138					0.1106577040538923
RTAIIVGGK	9	Unmodified	_RTAIIVGGK_					0	0	0		ENST00000391835.1_1_19:50380055-50380151:-|nuORF	ENST00000391835.1_1_19:50380055-50380151:-|nuORF	ENST00000391835.1_1_19:50380055-50380151:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	457.792727	913.5709	0.20599	9.4299E-05	0.99775	0.00045676	1.2037	0.00055106	457.79324795573933	19.993	0.42633	19.877	19.7	20.126	-0.11592	0.021362	1.5432E-06	NaN	20.581	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83525			40490	10026	23517	23518							0.1106577040538923
RTAIIVGGK	9	Unmodified	_RTAIIVGGK_					0	0	0		ENST00000391835.1_1_19:50380055-50380151:-|nuORF	ENST00000391835.1_1_19:50380055-50380151:-|nuORF	ENST00000391835.1_1_19:50380055-50380151:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	457.792727	913.5709	0.34681	0.00015877	0.92932	0.00042544	1.2761	0.0005842	457.7932651232499	19.94	0.38455	19.884	19.735	20.119	-0.055693	0.028673	-6.1107E-05	NaN	20.581	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83221			40491	10026	23517	23518							0.1106577040538923
RTAIPVLFF	9	Unmodified	_RTAIPVLFF_					0	0	0			REV__nc|ENSG00000214643|Q30KQ1|DEFB133	REV__nc|ENSG00000214643|Q30KQ1|DEFB133	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3204345703125	2	532.318577	1062.6226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.935	1	88.024	87.524	88.524	0.089195								0	0	0	0.25352	1	23201	23201		5.2307	0	1		+		40492	23188	23518	23519	49139	49139					0.0937951409928246
RTALNLFFK	9	Unmodified	_RTALNLFFK_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3265380859375	2	555.326934	1108.63931	0.39041	0.0002168	-0.87203	-0.00048426	-0.48162	-0.00026746	555.326245894357	52.78	0.96832	52.78	52.574	53.542	0					90	35	4	0	0	0	0.0023895	3	12442	12397;12442;12490		107.1	54.831	1	3645200			40493	3034	23519	23520	49140;49141;49142	49141					0.08934014985220529
RTALNLFFK	9	Unmodified	_RTALNLFFK_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.828369140625	2	555.326934	1108.63931	0.50964	0.00028302	-1.2833	-0.00071264	-0.77364	-0.00042962	555.3259011424304	52.751	1.292	52.801	52.523	53.815	0.050575					105	47	4	0	0	0	0.001957	5	12427	12369;12417;12426;12427;12472		110.55	58.754	1	3462700			40494	3034	23519	23520	49143;49144;49145;49146;49147	49146					0.08934014985220529
RTALNLFFK	9	Unmodified	_RTALNLFFK_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3268432617188	2	555.326934	1108.63931	0.28186	0.00015652	-0.39479	-0.00021924	-0.11294	-6.2716E-05	555.326595627404	53.01	1.1399	53.001	52.654	53.794	-0.0096054					96	42	4	0	0	0	0.0023895	2	12492	12442;12492		107.1	58.754	1	3708700			40495	3034	23519	23520	49148;49149	49149					0.08934014985220529
RTALRHRGAR	10	Unmodified	_RTALRHRGAR_					0	0	0		ENST00000435760.5_1_3:11314034-11322732:+|nuORF	ENST00000435760.5_1_3:11314034-11322732:+|nuORF	ENST00000435760.5_1_3:11314034-11322732:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3592529296875	2	597.357954	1192.70135	0.5263	0.00031439	-0.0252	-1.5053E-05	0.5011	0.00029934	597.3585424498953	90.185	1.4279	90.185	89.495	90.923	0					313	115	4	0	0	0	0.41168	1	23829	23829		1.3295	1.3295	1	1038300			40496	10512	23520	23521	49150	49150					0.11271179176924306
RTAPQTPVL	9	Unmodified	_RTAPQTPVL_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.L1152Sfs*20|1|0.31|ENSG00000065534|chr3:123692847-123692847|T/-|frameshift_variant;nc|ENSG00000065534|Q15746-5|MYLK;ENST00000514623.1_1_3:123428573-123453020:-|nuORF	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.8057556152344	2	491.787641	981.56073	0.21778	0.0001071	0.38407	0.00018888	0.60185	0.00029598	491.7875795334539	23.443	0.41502	23.355	23.216	23.631	-0.087608					23	14	2	0	0	0	0.25706	1	3448	3448		6.7232	6.7232	1	46479			40497	819	23521	23522	49151	49151					0.06921162680123416
RTCLLLPCL	9	Carbamidomethyl (C)	_RTCLLLPC(Carbamidomethyl (C))L_	RTCLLLPC(1)L		RTC(-56)LLLPC(56)L		0	1	0		Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|75|2|sense;Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|76|2|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|75|2|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|75|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.8201904296875	2	544.80138	1087.58821	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.926	1	65.914	65.414	66.414	-0.011993								0	0	0	0.065718	1	16461	16461		56.177	20.05	2				40498	12364	23522	23523	49152	49152	18				0.04791606624485212
RTDDKVIRFK	10	Unmodified	_RTDDKVIRFK_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;FAM120A|p.G386Afs*27|1|0.58|ENSG00000048828|chr9:93516004-93516004|G/-|frameshift_variant	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.5823974609375	3	426.582333	1276.72517	-0.17795	-7.591E-05	-0.056871	-2.426E-05	-0.23482	-0.00010017	426.5824415293047	19.693	0.67007	19.693	19.375	20.045	0					59	23	3	0	0	0	0.27881	1	2299	2299		23.016	15.539	1	151040			40499	12572	23523	23524	49153	49153					0.09787555100069767
RTDDKVIRFK	10	Unmodified	_RTDDKVIRFK_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;FAM120A|p.G386Afs*27|1|0.58|ENSG00000048828|chr9:93516004-93516004|G/-|frameshift_variant	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.582275390625	3	426.582333	1276.72517	-0.043808	-1.8688E-05	-0.1742	-7.4312E-05	-0.21801	-9.2999E-05	426.5823201356666	19.887	0.74842	19.771	19.433	20.182	-0.11592					69	25	4	0	0	0	0.31709	1	2361	2361		18.34	13.624	1	160030			40500	12572	23523	23524	49154	49154					0.09787555100069767
RTDDKVIRFK	10	Unmodified	_RTDDKVIRFK_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;FAM120A|p.G386Afs*27|1|0.58|ENSG00000048828|chr9:93516004-93516004|G/-|frameshift_variant	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.58221435546875	3	426.582333	1276.72517	0.079348	3.3849E-05	-0.0033171	-1.415E-06	0.076031	3.2434E-05	426.5823359021435	19.769	0.60323	19.714	19.516	20.119	-0.055691					54	21	4	0	0	0	0.29542	1	2329	2329		27.129	19.652	1	181680			40501	12572	23523	23524	49155	49155					0.09787555100069767
RTDEAAFQK	9	Unmodified	_RTDEAAFQK_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2694091796875	2	533.269813	1064.52507	0.28511	0.00015204	-1.9147	-0.0010211	-1.6296	-0.00086901	533.268605032426	15.814	0.85396	15.814	15.413	16.267	0					61	29	3	0	0	0	0.13671	3	1133	1117;1133;1180		32.898	12.009	1	231610			40502	7828	23524	23525	49156;49157;49158	49157					-0.004609195675357114
RTDEAAFQK	9	Unmodified	_RTDEAAFQK_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2689208984375	2	533.269813	1064.52507	0.13882	7.4029E-05	-1.7471	-0.00093165	-1.6082	-0.00085762	533.2687018934611	15.928	0.73307	15.813	15.486	16.219	-0.11434					53	24	3	0	0	0	0.093486	3	1169	1169;1217;1228		39.213	16.477	1	232540			40503	7828	23524	23525	49159;49160;49161	49159					-0.004609195675357114
RTDEAAFQK	9	Unmodified	_RTDEAAFQK_					0	0	0		ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	ENSG00000196154|ENST00000368716|S100A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2681274414062	2	533.269813	1064.52507	0.28272	0.00015077	-1.955	-0.0010425	-1.6723	-0.00089178	533.2687164004681	15.849	0.68821	15.786	15.459	16.147	-0.063041					60	23	4	0	0	0	0.093486	2	1133	1133;1182		39.213	18.759	1	218800			40504	7828	23524	23525	49162;49163	49162					-0.004609195675357114
RTDKHSLRKV	10	Unmodified	_RTDKHSLRKV_					0	0	0		ENST00000513726.5_1_4:1932463-1953839:+|nuORF	ENST00000513726.5_1_4:1932463-1953839:+|nuORF	ENST00000513726.5_1_4:1932463-1953839:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3679809570312	2	620.367653	1238.72075	-0.13462	-8.3512E-05	3.4346	0.0021307	3.3	0.0020472	620.3692756731141	113.6	0.064728	113.6	113.56	113.62	0					11	7	2	0	0	0	0.41085	1	29500	29500		1.4819	0	1	20206			40505	11403	23525	23526	49164	49164					0.11094090677170243
RTDKHSLRKV	10	Unmodified	_RTDKHSLRKV_					0	0	0		ENST00000513726.5_1_4:1932463-1953839:+|nuORF	ENST00000513726.5_1_4:1932463-1953839:+|nuORF	ENST00000513726.5_1_4:1932463-1953839:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3682861328125	2	620.367653	1238.72075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.25	1	113.23	112.73	113.73	-0.017303								0	0	0	0.38166	1	29439	29439		1.4819	0	1				40506	11403	23525	23526	49165	49165					0.11094090677170243
RTDKHSLRKV	10	Unmodified	_RTDKHSLRKV_					0	0	0		ENST00000513726.5_1_4:1932463-1953839:+|nuORF	ENST00000513726.5_1_4:1932463-1953839:+|nuORF	ENST00000513726.5_1_4:1932463-1953839:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3690185546875	2	620.367653	1238.72075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.69	1	117.67	117.17	118.17	-0.024147								0	0	0	0.38166	1	30451	30451		1.4819	0	1				40507	11403	23525	23526	49166	49166					0.11094090677170243
RTDKHSLRKV	10	Unmodified	_RTDKHSLRKV_					0	0	0		ENST00000513726.5_1_4:1932463-1953839:+|nuORF	ENST00000513726.5_1_4:1932463-1953839:+|nuORF	ENST00000513726.5_1_4:1932463-1953839:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3682250976562	2	620.367653	1238.72075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.55	1	118.53	118.03	119.03	-0.024147								0	0	0	0.38166	1	30640	30640		1.4819	0	1				40508	11403	23525	23526	49167	49167					0.11094090677170243
RTDKHSLRKV	10	Unmodified	_RTDKHSLRKV_					0	0	0		ENST00000513726.5_1_4:1932463-1953839:+|nuORF	ENST00000513726.5_1_4:1932463-1953839:+|nuORF	ENST00000513726.5_1_4:1932463-1953839:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3678588867188	2	620.367653	1238.72075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.21	1	115.23	114.73	115.73	0.018738								0	0	0	0.38166	1	29935	29935		1.4819	0	1				40509	11403	23525	23526	49168	49168					0.11094090677170243
RTDNISFMLK	10	Oxidation (M)	_RTDNISFM(Oxidation (M))LK_		RTDNISFM(1)LK		RTDNISFM(110)LK	0	0	1		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.L722Wfs*49|1|0.27|ENSG00000162434|chr1:64844841-64844841|G/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.8215942382812	2	620.821355	1239.62816	0.019261	1.1958E-05	0.098095	6.09E-05	0.11736	7.2857E-05	620.8213819082792	38.52	0.83342	38.52	38.239	39.073	0					79	29	4	0	0	0	0.0018228	2	8056	8007;8056		110.18	56.863	1	1865600			40510	5572	23526	23527	49169;49170	49170		674			0.017928248287716997
RTDNISFMLK	10	Oxidation (M)	_RTDNISFM(Oxidation (M))LK_		RTDNISFM(1)LK		RTDNISFM(110)LK	0	0	1		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.L722Wfs*49|1|0.27|ENSG00000162434|chr1:64844841-64844841|G/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.8212890625	2	620.821355	1239.62816	0.14866	9.2292E-05	-0.16939	-0.00010516	-0.020727	-1.2868E-05	620.8212553480643	38.464	0.64854	38.555	38.294	38.942	0.090881					69	23	4	0	0	0	0.0018228	2	8038	7995;8038		110.18	64.157	1	2169700			40511	5572	23526	23527	49171;49172	49172		674			0.017928248287716997
RTDNISFMLK	10	Oxidation (M)	_RTDNISFM(Oxidation (M))LK_		RTDNISFM(1)LK		RTDNISFM(120)LK	0	0	1		ENSG00000162434|ENST00000342505|JAK1;JAK1|p.L722Wfs*49|1|0.27|ENSG00000162434|chr1:64844841-64844841|G/-|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.8214111328125	2	620.821355	1239.62816	0.26655	0.00016548	-0.19867	-0.00012334	0.06788	4.2141E-05	620.8212227315793	38.449	0.71875	38.547	38.202	38.921	0.097527					79	25	4	0	0	0	0.0010901	2	8024	7978;8024		119.6	66.286	1	1658400			40512	5572	23526	23527	49173;49174	49174		674			0.017928248287716997
RTDRVLKHK	9	Unmodified	_RTDRVLKHK_					0	0	0		ENSG00000163848|ENST00000360647|ZNF148;ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ZNF148|p.Q640Sfs*7|1|0.36|ENSG00000163848|chr3:125232809-125232809|A/-|frameshift_variant	ENSG00000163848|ENST00000360647|ZNF148	ENSG00000163848|ENST00000360647|ZNF148	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8516845703125	2	576.851638	1151.68872	0.063377	3.6559E-05	-0.1855	-0.000107	-0.12212	-7.0445E-05	576.8516384496401	12.185	0.3443	12.088	11.979	12.324	-0.096607					32	13	4	0	0	0	0.2719	1	53	53		13.042	0	1	196120			40513	5744	23527	23528	49175	49175					0.1189472299404315
RTDRVLKHK	9	Unmodified	_RTDRVLKHK_					0	0	0		ENSG00000163848|ENST00000360647|ZNF148;ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ZNF148|p.Q640Sfs*7|1|0.36|ENSG00000163848|chr3:125232809-125232809|A/-|frameshift_variant	ENSG00000163848|ENST00000360647|ZNF148	ENSG00000163848|ENST00000360647|ZNF148	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8515625	2	576.851638	1151.68872	-0.18879	-0.0001089	0.20576	0.00011869	0.016969	9.7887E-06	576.8517130188458	12.199	0.28052	12.131	12.032	12.313	-0.06806					32	11	4	0	0	0	0.21447	1	50	50		21.537	3.3906	1	190770			40514	5744	23527	23528	49176	49176					0.1189472299404315
RTDRVLKHK	9	Unmodified	_RTDRVLKHK_					0	0	0		ENSG00000163848|ENST00000360647|ZNF148;ENST00000497929.1_1_3:124951187-125011317:-|nuORF;ZNF148|p.Q640Sfs*7|1|0.36|ENSG00000163848|chr3:125232809-125232809|A/-|frameshift_variant	ENSG00000163848|ENST00000360647|ZNF148	ENSG00000163848|ENST00000360647|ZNF148	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	576.851638	1151.68872	-0.11945	-6.8904E-05	-0.038273	-2.2078E-05	-0.15772	-9.0982E-05	576.8515515787885	12.185	0.27705	12.185	12.087	12.364	0	0.050419	-4.9085E-05	NaN	21.537	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176620			40515	5744	23527	23528							0.1189472299404315
RTDTASRLK	9	Unmodified	_RTDTASRLK_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-4|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2987060546875	2	524.298904	1046.58326	0.15896	8.3345E-05	-0.1187	-6.2232E-05	0.040269	2.1113E-05	524.298920244019	12.635	0.37885	12.536	12.407	12.785	-0.099291					31	12	3	0	0	0	0.23612	1	183	183		18.373	6.1324	1	197650			40516	692;10077	23528	23529	49177	49177					0.06182762077764892
RTDVNIRVI	9	Unmodified	_RTDVNIRVI_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7825317382812	2	543.324922	1084.63529	0.29708	0.00016141	-0.073042	-3.9686E-05	0.22404	0.00012172	543.3247742403014	38.371	0.59187	38.371	38.149	38.741	0					46	20	3	0	0	0	0.18733	1	8020	8020		35.612	14.022	1	668460			40517	1748	23529	23530	49178	49178					0.09635925491511443
RTDVNIRVI	9	Unmodified	_RTDVNIRVI_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8056030273438	2	543.324922	1084.63529	0.61655	0.00033499	-0.33973	-0.00018458	0.27682	0.0001504	543.3245801923277	38.33	0.52106	38.421	38.209	38.73	0.090881					44	18	3	0	0	0	0.1645	1	7980	7980		40.239	13.971	1	614430			40518	1748	23529	23530	49179	49179					0.09635925491511443
RTDVNIRVI	9	Unmodified	_RTDVNIRVI_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.78271484375	2	543.324922	1084.63529	0.59531	0.00032345	-0.44337	-0.00024089	0.15194	8.2555E-05	543.3246345042303	38.294	0.66012	38.391	38.122	38.782	0.097527					47	23	3	0	0	0	0.089483	1	7967	7967		59.368	13.629	1	596420			40519	1748	23529	23530	49180	49180					0.09635925491511443
RTEDTKEMKI	10	Unmodified	_RTEDTKEMKI_					0	0	0			REV__BBX|p.F697Ifs*8|1|0.34|ENSG00000114439|chr3:107778396-107778397|-/A|frameshift_variant	REV__BBX|p.F697Ifs*8|1|0.34|ENSG00000114439|chr3:107778396-107778397|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.2747802734375	2	625.824095	1249.63364	0.45271	0.00028332	0.00069348	4.34E-07	0.45341	0.00028375	625.8239601320622	56.789	0.43056	56.789	56.66	57.09	0					22	15	2	0	0	0	0.31986	1	13740	13740		2.4985	0	1	224750	+		40520	13124	23530	23531	49181	49181					0.018805036206003933
RTEEYLFYF	9	Unmodified	_RTEEYLFYF_					0	0	0			REV__nc|ENSG00000286014|P0DUD4|SPDYE15	REV__nc|ENSG00000286014|P0DUD4|SPDYE15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.59246826171875	3	423.20464	1266.59209	0.035558	1.5048E-05	-1.3736	-0.00058131	-1.338	-0.00056626	423.2040585434452	45.183	0.37822	45.183	45.015	45.393	0					19	13	2	0	0	0	0.2603	1	10119	10119		4.1895	0	1	236590	+		40521	18457	23531	23532	49182	49182					-0.030543090764467706
RTEIRNESRN	10	Unmodified	_RTEIRNESRN_					0	0	0		nc|ENSG00000123200|Q5T200-2|ZC3H13;nc|ENSG00000123200|Q5T200|ZC3H13;ENSG00000123200|ENST00000679008|ZC3H13	nc|ENSG00000123200|Q5T200-2|ZC3H13	nc|ENSG00000123200|Q5T200-2|ZC3H13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.3616333007812	2	637.831631	1273.64871	0.58303	0.00037187	-2.9381	-0.001874	-2.3551	-0.0015021	638.33083403319	81.135	0.070114	81.108	81.065	81.135	-0.026825					4	2	2	0	0	0	0.31926	1	21092	21092		2.9952	0	1	51571			40522	3092	23532	23533	49183	49183					0.022831315327948687
RTFDEFQEL	9	Unmodified	_RTFDEFQEL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.3070678710938	2	592.782753	1183.55095	0.82766	0.00049062	-0.1813	-0.00010747	0.64636	0.00038315	592.7826061408185	54.912	0.43524	54.912	54.626	55.061	0					24	15	2	0	0	0	0.19888	1	13044	13044		32.037	3.543	1	639900			40523	441	23533	23534	49184	49184					-0.03348070115907831
RTFDEFQEL	9	Unmodified	_RTFDEFQEL_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.3067626953125	2	592.782753	1183.55095	0.68191	0.00040422	-0.17282	-0.00010244	0.50909	0.00030178	592.7828201378231	55.107	0.42237	55.088	54.897	55.319	-0.019077					26	15	2	0	0	0	0.18479	1	13095	13095		34.932	3.6637	1	781430			40524	441	23533	23534	49185	49185					-0.03348070115907831
RTFDLLIGK	9	Unmodified	_RTFDLLIGK_					0	0	0		ENSG00000081181|ENST00000261783|ARG2	ENSG00000081181|ENST00000261783|ARG2	ENSG00000081181|ENST00000261783|ARG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8191528320312	2	531.818941	1061.62333	0.7646	0.00040663	-0.25096	-0.00013346	0.51364	0.00027316	531.8188220687169	47.409	0.74414	47.409	47.053	47.797	0					58	26	3	0	0	0	0.0099976	1	10745	10745		79.427	39.477	1	1309600			40525	1177	23534	23535	49186	49186					0.09498308748334239
RTFDLLIGK	9	Unmodified	_RTFDLLIGK_					0	0	0		ENSG00000081181|ENST00000261783|ARG2	ENSG00000081181|ENST00000261783|ARG2	ENSG00000081181|ENST00000261783|ARG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8193969726562	2	531.818941	1061.62333	0.40341	0.00021454	0.07448	3.961E-05	0.47789	0.00025415	531.8189110200238	47.328	0.66279	47.381	47.114	47.777	0.052574					69	24	4	0	0	0	0.022205	1	10721	10721		63.227	23.27	1	1552400			40526	1177	23534	23535	49187	49187					0.09498308748334239
RTFDLLIGK	9	Unmodified	_RTFDLLIGK_					0	0	0		ENSG00000081181|ENST00000261783|ARG2	ENSG00000081181|ENST00000261783|ARG2	ENSG00000081181|ENST00000261783|ARG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8194580078125	2	531.818941	1061.62333	1.0272	0.0005463	-0.47909	-0.00025479	0.54814	0.00029151	531.8186646204758	47.35	0.61494	47.404	47.142	47.757	0.054371					66	22	4	0	0	0	0.0091837	1	10722	10722		80.676	40.719	1	1681100			40527	1177	23534	23535	49188	49188					0.09498308748334239
RTFGDGVVATH	11	Unmodified	_RTFGDGVVATH_					0	0	0			REV__ENST00000565727.5_1_15:45880002-45880062:+|nuORF	REV__ENST00000565727.5_1_15:45880002-45880062:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.81201171875	2	580.296362	1158.57817	0.1054	6.1165E-05	0.39478	0.00022909	0.50018	0.00029025	580.2962945155202	17.207	0.34369	17.089	16.858	17.201	-0.11739					19	12	2	0	0	0	0.43842	1	1576	1576		6.1918	1.2948	1	31479	+		40528	22362	23535	23536	49189	49189					0.005224582151413415
RTFGNEARFIR	11	Unmodified	_RTFGNEARFIR_					0	0	0		nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;KMT2E|p.K996Ffs*4|1|0.08|ENSG00000005483|chr7:105107442-105107443|-/TTCTGTATAT|frameshift_variant;nc|ENSG00000005483|Q8IZD2-8|KMT2E;KMT2E|p.S1340Nfs*22|1|0.04|ENSG00000005483|chr7:105110817-105110818|-/AACCAACTTTTTATAAAGGC|frameshift_variant;nc|ENSG00000005483|Q8IZD2-6|KMT2E;nc|ENSG00000005483|Q8IZD2-3|KMT2E;nc|ENSG00000005483|Q8IZD2-4|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7932434082031	3	456.249465	1365.72657	-0.10941	-4.9917E-05	0.58806	0.0002683	0.47865	0.00021838	456.2494776409137	31.429	0.26881	31.429	31.258	31.526	0					16	9	3	0	0	0	0.33238	1	5869	5869		2.9264	1.4712	1	90492			40529	338	23536	23537	49190	49190					0.058331891888201426
RTFPFSLQY	9	Unmodified	_RTFPFSLQY_					0	0	0		ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.8008422851562	2	579.800749	1157.58694	0.0095624	5.5443E-06	-0.69953	-0.00040559	-0.68997	-0.00040005	579.8001760150543	65.161	1.2065	65.25	64.933	66.139	0.088875					72	44	3	0	0	0	0.063898	1	16246	16246		47.732	3.8737	1	429390			40530	6517	23537	23538	49191	49191					0.01445431851630019
RTFPFSLQY	9	Unmodified	_RTFPFSLQY_					0	0	0		ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8005981445312	2	579.800749	1157.58694	0.092942	5.3888E-05	-0.12172	-7.0574E-05	-0.028779	-1.6686E-05	579.8005478201457	65.268	0.77863	65.256	64.996	65.774	-0.011337					63	28	3	0	0	0	0.033439	1	16274	16274		59.052	19.095	1	522130			40531	6517	23537	23538	49192	49192					0.01445431851630019
RTFPFSLQY	9	Unmodified	_RTFPFSLQY_					0	0	0		ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	579.800749	1157.58694	0.10575	6.1316E-05	-0.2696	-0.00015631	-0.16384	-9.4997E-05	579.8004779010262	65.264	0.86051	65.264	64.96	65.821	0	0.0074269	-2.5182E-06	NaN	59.052	68	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402330			40532	6517	23537	23538							0.01445431851630019
RTFSLFQQL	9	Unmodified	_RTFSLFQQL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3140869140625	2	570.314023	1138.61349	0.47512	0.00027097	-0.070747	-4.0348E-05	0.40438	0.00023062	570.3139504396253	66.036	1.3075	66.036	65.686	66.994	0					118	46	4	0	0	0	0.0008224	3	16557	16464;16512;16557		125.04	61.077	1	7472300			40533	2643	23538	23539	49193;49194;49195	49195					0.04973120742943138
RTFSLFQQL	9	Unmodified	_RTFSLFQQL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3141479492188	2	570.314023	1138.61349	0.62377	0.00035574	-0.33087	-0.0001887	0.2929	0.00016704	570.3137678548283	65.874	1.0376	65.963	65.677	66.715	0.088882					118	37	4	0	0	0	0.0008224	3	16499	16411;16457;16499		125.04	62.465	1	7465900			40534	2643	23538	23539	49196;49197;49198	49198					0.04973120742943138
RTFSLFQQL	9	Unmodified	_RTFSLFQQL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.3141479492188	2	570.314023	1138.61349	0.34499	0.00019675	-0.050208	-2.8634E-05	0.29478	0.00016812	570.3139104260238	65.971	1.0994	65.957	65.665	66.765	-0.013588					110	39	4	0	0	0	0.00012746	3	16493	16444;16493;16537		136.39	63.424	1	7398800			40535	2643	23538	23539	49199;49200;49201	49200					0.04973120742943138
RTFTWLVGK	9	Unmodified	_RTFTWLVGK_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.P889Lfs*40|1|0.02|ENSG00000197879|chr17:1468441-1468442|-/TTGCA|frameshift_variant	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3193359375	2	554.319109	1106.62366	0.64793	0.00035916	-0.10988	-6.0907E-05	0.53805	0.00029825	554.3189609623732	47.072	0.84205	47.072	46.84	47.682	0					79	29	3	0	0	0	0.089483	1	10687	10687		59.368	27.063	1	2497600			40536	8008	23539	23540	49202	49202					0.07461728468183537
RTFTWLVGK	9	Unmodified	_RTFTWLVGK_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.P889Lfs*40|1|0.02|ENSG00000197879|chr17:1468441-1468442|-/TTGCA|frameshift_variant	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3195190429688	2	554.319109	1106.62366	0.40506	0.00022453	0.37638	0.00020863	0.78143	0.00043316	554.3192121278843	46.876	0.86074	46.929	46.655	47.515	0.05257					79	31	4	0	0	0	0.0035713	1	10574	10574		97.741	65.436	1	2221900			40537	8008	23539	23540	49203	49203					0.07461728468183537
RTFTWLVGK	9	Unmodified	_RTFTWLVGK_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.P889Lfs*40|1|0.02|ENSG00000197879|chr17:1468441-1468442|-/TTGCA|frameshift_variant	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.8068237304688	2	554.319109	1106.62366	0.74654	0.00041382	-0.09291	-5.1502E-05	0.65363	0.00036232	554.3190307467473	46.944	0.83249	46.998	46.709	47.541	0.054371					78	29	3	0	0	0	0.30459	1	10728	10728		8.1555	8.1555	1	2028300			40538	8008	23539	23540	49204	49204					0.07461728468183537
RTFYINVL	8	Unmodified	_RTFYINVL_					0	0	0			REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	REV__nc|ENSG00000085382|Q8IYU2-2|HACE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.8080444335938	2	513.292559	1024.57057	0.27698	0.00014217	0.37195	0.00019092	0.64893	0.00033309	513.2927571502606	60.412	0.42712	60.412	60.15	60.577	0					35	15	3	0	0	0	0.42371	1	14714	14714		14.838	2.3067	1	2038900	+		40539	13958	23540	23541	49205	49205					0.05926350685513171
RTGDGIVQK	9	Unmodified	_RTGDGIVQK_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.27484130859375	2	487.274898	972.535243	-0.02476	-1.2065E-05	0.22761	0.00011091	0.20286	9.8846E-05	487.2751156554443	14.493	0.62854	14.389	14.023	14.651	-0.10466					47	21	3	0	0	0	0.020233	1	745	745		63.961	17.94	1	251010			40540	5043	23541	23542	49206	49206					0.04787688157705361
RTGDGIVQK	9	Unmodified	_RTGDGIVQK_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.2748107910156	2	487.274898	972.535243	-0.025253	-1.2305E-05	0.32995	0.00016078	0.3047	0.00014847	487.27499146351266	14.488	0.69068	14.422	14.098	14.788	-0.066068					51	24	3	0	0	0	0.064268	1	739	739		47.594	16.958	1	273450			40541	5043	23541	23542	49207	49207					0.04787688157705361
RTGKPIAV	8	Unmodified	_RTGKPIAV_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.T589*|1|0.05|ENSG00000009307|chr1:114723990-114723991|GT/-|frameshift_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2665100097656	2	421.266345	840.518136	-0.15843	-6.6742E-05	0.6155	0.00025929	0.45707	0.00019255	421.26647503272966	16.44	1.0635	16.44	16.123	17.186	0					87	36	4	0	0	0	0.31442	1	1313	1313		29.841	3.5724	1	875590			40542	405	23542	23543	49208	49208					0.09149812342559471
RTGKPIAVK	9	Unmodified	_RTGKPIAVK_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.T589*|1|0.05|ENSG00000009307|chr1:114723990-114723991|GT/-|frameshift_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.3135070800781	2	485.313826	968.613099	-0.09426	-4.5746E-05	-1.094	-0.00053093	-1.1882	-0.00057667	485.31364574916154	13.158	0.26626	13.059	12.894	13.16	-0.099291					21	8	3	0	0	0	0.25689	1	347	347		7.609	0.88579	1	89030			40543	405	23543	23544	49209	49209					0.12753745813756723
RTGKPIAVK	9	Unmodified	_RTGKPIAVK_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.T589*|1|0.05|ENSG00000009307|chr1:114723990-114723991|GT/-|frameshift_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.3135070800781	2	485.313826	968.613099	-0.1182	-5.7365E-05	-0.82295	-0.00039939	-0.94116	-0.00045676	485.31379474633474	13.14	0.39766	13.072	12.878	13.275	-0.067496					23	13	3	0	0	0	0.26278	1	337	337		14.405	0.49933	1	61856			40544	405	23543	23544	49210	49210					0.12753745813756723
RTGKPLSV	8	Unmodified	_RTGKPLSV_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.548583984375	2	429.263802	856.513051	-0.14949	-6.4171E-05	0.99511	0.00042717	0.84562	0.00036299	429.26423779182664	16.736	1.713	16.736	16.123	17.835	0					79	59	2	0	0	0	0.29394	1	1418	1418		29.082	0	1	1165000			40545	2575	23544	23545	49211	49211					0.0790550847995064
RTGKPLSV	8	Unmodified	_RTGKPLSV_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.5484924316406	2	429.263802	856.513051	-0.029177	-1.2525E-05	0.91991	0.00039488	0.89073	0.00038236	429.26420670636514	16.788	1.1491	16.725	16.351	17.5	-0.062532					61	40	2	0	0	0	0.29394	1	1455	1455		29.082	0	1	1159500			40546	2575	23544	23545	49212	49212					0.0790550847995064
RTGKVTVEK	9	Unmodified	_RTGKVTVEK_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.30609130859375	2	509.306198	1016.59784	-0.03332	-1.697E-05	0.70529	0.00035921	0.67197	0.00034224	509.30661025815544	12.514	0.48299	12.514	12.332	12.815	0					35	15	4	0	0	0	0.1426	1	149	149		32.037	0	1	211050			40547	12859	23545	23546	49213	49213					0.09020834225907493
RTGKVTVEK	9	Unmodified	_RTGKVTVEK_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.30615234375	2	509.306198	1016.59784	-0.013172	-6.7087E-06	0.81476	0.00041496	0.80159	0.00040825	509.30676249165316	12.521	0.43958	12.424	12.206	12.646	-0.096607					31	14	4	0	0	0	0.083138	1	146	146		40.725	4.2187	1	198190			40548	12859	23545	23546	49214	49214					0.09020834225907493
RTGYTLDV	8	Unmodified	_RTGYTLDV_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;chr6:85641451-85641990|481|13.22|0.81|4.04|-|ENST00000677059|SYNCRIP,SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000125944|O43390-4|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.7428894042969	2	462.742899	923.471246	-0.10274	-4.7541E-05	0.46398	0.0002147	0.36124	0.00016716	462.7430230728642	39.338	0.62839	39.431	39.201	39.83	0.09267					38	22	2	0	0	0	0.2502	1	8305	8305		36.506	8.8774	1	464200			40549	174	23546	23547	49215	49215					0.006449080007541852
RTHPQCVP	8	Unmodified	_RTHPQCVP_					0	0	0			REV__ENST00000582375.1_1_18:9132365-9136405:-|nuORF	REV__ENST00000582375.1_1_18:9132365-9136405:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.2702941894531	2	469.237261	936.45997	0.14101	6.6166E-05	-1.6732	-0.00078511	-1.5322	-0.00071895	469.2361843562145	16.362	0.26631	16.299	16.147	16.414	-0.062534					13	8	2	0	0	0	0.34408	1	1306	1306		2.3027	0	1	24095	+		40550	22490	23547	23548	49216	49216					-0.010801925743749052
RTHPSLPFWM	10	Unmodified	_RTHPSLPFWM_					0	0	0		ENST00000222481.8_1_7:129915025-129919371:+|nuORF	ENST00000222481.8_1_7:129915025-129919371:+|nuORF	ENST00000222481.8_1_7:129915025-129919371:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.8529052734375	2	636.321325	1270.6281	0.48684	0.00030979	1.0104	0.00064293	1.4972	0.00095271	636.3221150326896	70.032	0.61519	70.098	69.769	70.384	0.06604					32	21	2	0	0	0	0.31929	1	17749	17749		11.495	6.5977	1	190190			40551	8836	23548	23549	49217	49217					0.0036086961940782203
RTHQQAPLK	9	Unmodified	_RTHQQAPLK_					0	0	0		ENST00000540497.5_3_20:45938819-45938885:-|nuORF	ENST00000540497.5_3_20:45938819-45938885:-|nuORF	ENST00000540497.5_3_20:45938819-45938885:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8091430664062	2	539.809439	1077.60433	0.1634	8.8206E-05	-0.30384	-0.00016402	-0.14044	-7.5809E-05	539.8091149984996	12.544	0.25824	12.448	12.356	12.614	-0.096607					17	8	3	0	0	0	0.30064	1	174	174		8.7454	0.15213	1	55827			40552	11721	23549	23550	49218	49218					0.06862772177260013
RTHQQAPLK	9	Unmodified	_RTHQQAPLK_					0	0	0		ENST00000540497.5_3_20:45938819-45938885:-|nuORF	ENST00000540497.5_3_20:45938819-45938885:-|nuORF	ENST00000540497.5_3_20:45938819-45938885:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	539.809439	1077.60433	0.1267	6.8394E-05	-0.08945	-4.8286E-05	0.03725	2.0108E-05	539.8091387502132	12.564	0.27172	12.564	12.397	12.669	0	0.048636	0.00025362	NaN	8.7454	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52903			40553	11721	23549	23550							0.06862772177260013
RTIAPIIGR	9	Unmodified	_RTIAPIIGR_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.8194580078125	2	498.819276	995.623999	0.50152	0.00025017	-0.071567	-3.5699E-05	0.42996	0.00021447	498.81919885433496	32.696	1.2014	32.696	32.415	33.617	0					124	42	4	0	0	0	2.4074E-11	4	6272	6223;6272;6318;6368		195.45	102.63	1	2933000			40554	1467	23550	23551	49219;49220;49221;49222	49220					0.1260114818803686
RTIAPIIGR	9	Unmodified	_RTIAPIIGR_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8194580078125	2	498.819276	995.623999	0.52184	0.0002603	-0.11522	-5.7472E-05	0.40662	0.00020283	498.8191746850876	32.623	1.1033	32.678	32.344	33.447	0.055309					119	39	4	0	0	0	3.6949E-07	4	6241	6193;6241;6294;6349		165.72	80.448	1	3072900			40555	1467	23550	23551	49223;49224;49225;49226	49224					0.1260114818803686
RTIAPIIGR	9	Unmodified	_RTIAPIIGR_					0	0	0		ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.81939697265625	2	498.819276	995.623999	0.3667	0.00018291	0.039472	1.969E-05	0.40617	0.0002026	498.81927272377055	32.59	0.95182	32.644	32.364	33.316	0.054371					106	34	4	0	0	0	1.3736E-17	4	6231	6181;6231;6280;6329		225.01	132.19	1	3301700			40556	1467	23550	23551	49227;49228;49229;49230	49228					0.1260114818803686
RTIATALEY	9	Unmodified	_RTIATALEY_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.284912109375	2	519.284931	1036.55531	0.48882	0.00025384	0.76729	0.00039844	1.2561	0.00065228	519.2855496644495	44.367	1.2204	44.367	43.741	44.961	0					88	44	3	0	0	0	0.01909	2	9856	9809;9856		65.474	5.1202	1	1708300			40557	3877	23551	23552	49231;49232	49232					0.03849439097643881
RTIATALEY	9	Unmodified	_RTIATALEY_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2846069335938	2	519.284931	1036.55531	0.42832	0.00022242	0.50005	0.00025967	0.92837	0.00048209	519.285428057323	44.115	1.038	44.192	43.71	44.748	0.077518					77	35	3	0	0	0	0.038291	2	9748	9748;9799		57.249	21.122	1	2263700			40558	3877	23551	23552	49233;49234	49233					0.03849439097643881
RTIATALEY	9	Unmodified	_RTIATALEY_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2848510742188	2	519.284931	1036.55531	0.31153	0.00016177	0.92628	0.000481	1.2378	0.00064277	519.2855925982036	44.067	1.3983	44.151	43.522	44.92	0.083996					94	51	3	0	0	0	0.059067	2	9709	9709;9759		49.527	9.5699	1	2460400			40559	3877	23551	23552	49235;49236	49235					0.03849439097643881
RTIFPLFMK	9	Oxidation (M)	_RTIFPLFM(Oxidation (M))K_		RTIFPLFM(1)K		RTIFPLFM(69)K	0	0	1		ENST00000473857.5_1_20:36384780-36460672:+|nuORF;nc|ENSG00000132792|Q8WYA6-3|CTNNBL1;nc|ENSG00000132792|Q8WYA6-2|CTNNBL1;nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1	ENST00000473857.5_1_20:36384780-36460672:+|nuORF	ENST00000473857.5_1_20:36384780-36460672:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.8309326171875	2	584.830995	1167.64744	0.39468	0.00023082	-0.52578	-0.00030749	-0.1311	-7.667E-05	584.8307760471356	52.735	0.82015	52.735	52.408	53.228	0					103	29	4	0	0	0	0.067514	1	12471	12471		69.338	43.07	1	3575700			40560	3664	23552	23553	49237	49237		465			0.07031825910326006
RTIFPLFMK	9	Oxidation (M)	_RTIFPLFM(Oxidation (M))K_		RTIFPLFM(1)K		RTIFPLFM(57)K	0	0	1		ENST00000473857.5_1_20:36384780-36460672:+|nuORF;nc|ENSG00000132792|Q8WYA6-3|CTNNBL1;nc|ENSG00000132792|Q8WYA6-2|CTNNBL1;nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1	ENST00000473857.5_1_20:36384780-36460672:+|nuORF	ENST00000473857.5_1_20:36384780-36460672:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.8311767578125	2	584.830995	1167.64744	0.4858	0.00028411	-0.57319	-0.00033522	-0.087387	-5.1107E-05	584.8307599312302	52.693	0.79827	52.743	52.417	53.215	0.050575					97	28	4	0	0	0	0.038291	1	12447	12447		57.249	39.103	1	3374400			40561	3664	23552	23553	49238	49238		465			0.07031825910326006
RTIFPLFMK	9	Oxidation (M)	_RTIFPLFM(Oxidation (M))K_		RTIFPLFM(1)K		RTIFPLFM(51)K	0	0	1		ENST00000473857.5_1_20:36384780-36460672:+|nuORF;nc|ENSG00000132792|Q8WYA6-3|CTNNBL1;nc|ENSG00000132792|Q8WYA6-2|CTNNBL1;nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1	ENST00000473857.5_1_20:36384780-36460672:+|nuORF	ENST00000473857.5_1_20:36384780-36460672:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8309326171875	2	584.830995	1167.64744	0.35635	0.0002084	-0.31589	-0.00018474	0.040463	2.3664E-05	584.8308625189303	52.896	0.86189	52.886	52.54	53.401	-0.0096054					117	31	4	0	0	0	0.053792	1	12530	12530		51.488	27.698	1	3751800			40562	3664	23552	23553	49239	49239		465			0.07031825910326006
RTIGVITKL	9	Unmodified	_RTIGVITKL_					0	0	0		nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8291931152344	2	500.829309	999.644065	0.19707	9.8698E-05	-0.31192	-0.00015622	-0.11486	-5.7523E-05	500.8290532316	38.358	0.89455	38.358	38.064	38.958	0					79	31	4	0	0	0	0.069258	1	8014	8014		45.74	1.758	1	2368800			40563	1141;8018	23553	23554	49240	49240					0.14422899127964683
RTIGVITKL	9	Unmodified	_RTIGVITKL_					0	0	0		nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8293762207031	2	500.829309	999.644065	0.4065	0.00020359	-0.6375	-0.00031928	-0.231	-0.00011569	500.82890084055964	38.29	0.92449	38.381	38.101	39.026	0.090881					76	33	3	0	0	0	0.059067	1	7947	7947		49.527	0	1	2274000			40564	1141;8018	23553	23554	49241	49241					0.14422899127964683
RTIGVMTMV	9	2 Oxidation (M)	_RTIGVM(Oxidation (M))TM(Oxidation (M))V_		RTIGVM(1)TM(1)V		RTIGVM(72)TM(72)V	0	0	2		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2680053710938	2	520.26737	1038.52019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.045	1	33.045	32.545	33.545	0								0	0	0	0.015736	1	6366	6366		71.708	45.44	1				40565	3985	23554	23555	49242	49242		499;500			0.0024673697384969273
RTIGVMTMV	9	2 Oxidation (M)	_RTIGVM(Oxidation (M))TM(Oxidation (M))V_		RTIGVM(1)TM(1)V		RTIGVM(57)TM(57)V	0	0	2		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2684936523438	2	520.26737	1038.52019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.903	1	32.957	32.457	33.457	0.054371								0	0	0	0.062149	1	6317	6317		57.249	23.147	1				40566	3985	23554	23555	49243	49243		499;500			0.0024673697384969273
RTILEMTQILK	11	Oxidation (M)	_RTILEM(Oxidation (M))TQILK_		RTILEM(1)TQILK		RTILEM(64)TQILK	0	0	1		nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENST00000444990.5_1_2:243030866-243058384:+|nuORF;ENST00000456398.5_1_2:243030866-243061155:+|nuORF	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.5989990234375	3	454.598884	1360.77482	0.23897	0.00010863	0.0042695	1.9409E-06	0.24324	0.00011057	454.5989776277479	45.22	0.59669	45.22	44.961	45.558	0					64	21	4	0	0	0	0.16249	1	10069	10069		63.555	37.435	1	1200900			40567	12748	23555	23556	49244	49244		977			0.10886501993854836
RTILEMTQILK	11	Oxidation (M)	_RTILEM(Oxidation (M))TQILK_		RTILEM(1)TQILK		RTILEM(67)TQILK	0	0	1		nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENST00000444990.5_1_2:243030866-243058384:+|nuORF;ENST00000456398.5_1_2:243030866-243061155:+|nuORF	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.5988464355469	3	454.598884	1360.77482	0.35689	0.00016224	-0.078779	-3.5813E-05	0.27811	0.00012643	454.5987371535469	44.597	0.40539	44.666	44.437	44.843	0.068573					40	14	3	0	0	0	0.011174	1	9877	9877		67.187	41.066	1	1146300			40568	12748	23555	23556	49245	49245		977			0.10886501993854836
RTILEMTQILK	11	Oxidation (M)	_RTILEM(Oxidation (M))TQILK_		RTILEM(1)TQILK		RTILEM(80)TQILK	0	0	1		nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENST00000444990.5_1_2:243030866-243058384:+|nuORF;ENST00000456398.5_1_2:243030866-243061155:+|nuORF	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.9330749511719	3	454.598884	1360.77482	0.2792	0.00012692	-0.080393	-3.6547E-05	0.19881	9.0377E-05	454.59894336376095	45.004	0.6709	45.073	44.843	45.514	0.068569					70	23	4	0	0	0	0.12281	1	10017	10017		79.705	52.576	1	1360700			40569	12748	23555	23556	49246	49246		977			0.10886501993854836
RTILEMTQILK	11	Oxidation (M)	_RTILEM(Oxidation (M))TQILK_		RTILEM(1)TQILK		RTILEM(57)TQILK	0	0	1		nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENST00000444990.5_1_2:243030866-243058384:+|nuORF;ENST00000456398.5_1_2:243030866-243061155:+|nuORF	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.5990295410156	3	454.598884	1360.77482	0.29917	0.000136	0.01582	7.1919E-06	0.31499	0.00014319	454.5988115463849	44.612	0.74055	44.687	44.389	45.129	0.075047					59	18	4	0	0	0	0.037315	1	9864	9864		56.91	30.789	1	1271800			40570	12748	23555	23556	49247	49247		977			0.10886501993854836
RTILEMTQILK	11	Oxidation (M)	_RTILEM(Oxidation (M))TQILK_		RTILEM(1)TQILK		RTILEM(60)TQILK	0	0	1		nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENST00000444990.5_1_2:243030866-243058384:+|nuORF;ENST00000456398.5_1_2:243030866-243061155:+|nuORF	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.5989074707031	3	454.598884	1360.77482	0.29187	0.00013268	-0.17843	-8.1114E-05	0.11343	5.1567E-05	454.598912646826	45.031	0.64321	45.106	44.883	45.526	0.07505					64	23	4	0	0	0	0.17689	1	10055	10055		59.935	36.92	1	1201900			40571	12748	23555	23556	49248	49248		977			0.10886501993854836
RTILEMTQILK	11	Oxidation (M)	_RTILEM(Oxidation (M))TQILK_					0	0	1		nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENST00000444990.5_1_2:243030866-243058384:+|nuORF;ENST00000456398.5_1_2:243030866-243061155:+|nuORF	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	454.598884	1360.77482	0.41577	0.00018901	-0.28102	-0.00012775	0.13476	6.1259E-05	454.5987301643941	44.774	0.65305	44.774	44.493	45.146	0	0.064823	-0.00019386	NaN	67.187	50	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	838740			40572	12748	23555	23556				977			0.10886501993854836
RTINVYPNFR	10	Unmodified	_RTINVYPNFR_					0	0	0		ENSG00000065518|ENST00000184266|NDUFB4;nc|ENSG00000065518|O95168-2|NDUFB4	ENSG00000065518|ENST00000184266|NDUFB4	ENSG00000065518|ENST00000184266|NDUFB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.563720703125	3	427.235045	1278.6833	-0.16395	-7.0045E-05	2.2732	0.00097118	2.1092	0.00090114	427.2352184108754	40.948	0.64755	40.948	40.604	41.252	0					56	23	4	0	0	0	0.3189	1	8818	8818		5.5233	4.3085	1	344260			40573	817	23556	23557	49249	49249					0.05510999411535522
RTINVYPNFR	10	Unmodified	_RTINVYPNFR_					0	0	0		ENSG00000065518|ENST00000184266|NDUFB4;nc|ENSG00000065518|O95168-2|NDUFB4	ENSG00000065518|ENST00000184266|NDUFB4	ENSG00000065518|ENST00000184266|NDUFB4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	427.235045	1278.6833	0.085972	3.673E-05	0.28532	0.0001219	0.37129	0.00015863	427.2348946358758	40.567	0.6359	40.659	40.369	41.005	0.09267	-0.097367	-0.00098043	NaN	5.5233	41	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	538460			40574	817	23556	23557							0.05510999411535522
RTISETIER	9	Unmodified	_RTISETIER_					0	0	0		ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1	ENSG00000113407|ENST00000265112|TARS1	ENSG00000113407|ENST00000265112|TARS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8046875	2	552.80402	1103.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.516	1	23.516	23.016	24.016	0								0	0	0	0.24919	1	3471	3471		6.6304	0.42459	1				40575	2503	23557	23558	49250	49250					0.04583325012345085
RTISETIER	9	Unmodified	_RTISETIER_					0	0	0		ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1	ENSG00000113407|ENST00000265112|TARS1	ENSG00000113407|ENST00000265112|TARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.8045654296875	2	552.80402	1103.59349	0.39404	0.00021783	0.57327	0.0003169	0.96731	0.00053473	552.804333518465	23.653	0.45909	23.614	23.45	23.909	-0.038927					24	15	2	0	0	0	0.30459	1	3534	3534		8.1555	1.9497	1	60891			40576	2503	23557	23558	49251	49251					0.04583325012345085
RTISETIER	9	Unmodified	_RTISETIER_					0	0	0		ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1	ENSG00000113407|ENST00000265112|TARS1	ENSG00000113407|ENST00000265112|TARS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	552.80402	1103.59349	0.27445	0.00015172	0.60349	0.00033361	0.87794	0.00048533	552.8044935249135	23.633	0.48294	23.561	23.396	23.879	-0.072559	-0.026809	2.0763E-05	NaN	8.1555	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78737			40577	2503	23557	23558							0.04583325012345085
RTISSDAVLQR	11	Unmodified	_RTISSDAVLQR_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;nc|ENSG00000073350|Q6P1M3-3|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.3489379882812	2	623.349126	1244.6837	-0.01265	-7.8852E-06	0.68918	0.0004296	0.67653	0.00042171	623.3492895073375	28.719	0.26061	28.719	28.606	28.866	0.0004673					11	8	2	0	0	0	0.41299	1	5054	5054		15.739	3.498	1	95483			40578	1001	23558	23559	49252	49252					0.07114374340744689
RTISSDAVLQR	11	Unmodified	_RTISSDAVLQR_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;nc|ENSG00000073350|Q6P1M3-3|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	623.349126	1244.6837	0.27389	0.00017073	0.47456	0.00029582	0.74845	0.00046655	623.3493708775128	28.782	0.29524	28.782	28.578	28.873	0	0.031397	-7.7425E-05	NaN	15.739	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72295			40579	1001	23558	23559							0.07114374340744689
RTKDTPLSL	9	Unmodified	_RTKDTPLSL_					0	0	0		nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-6|ANKRD17;ENST00000506930.2_1_5:139884419-139889237:+|nuORF;ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	nc|ENSG00000132466|O75179-3|ANKRD17;ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2901000976562	2	515.798206	1029.58186	0.31655	0.00016328	-0.79308	-0.00040907	-0.47653	-0.00024579	515.7976630325373	30.009	0.48438	30.022	29.746	30.23	0.012266					25	16	2	0	0	0	0.12642	1	5472	5472		34.402	1.616	1	181970			40580	3572;3637	23559	23560	49253	49253					0.06825127989009161
RTKEIIVGF	9	Unmodified	_RTKEIIVGF_					0	0	0			REV__nc|ENSG00000204152|Q5SRD1-2|TIMM23B	REV__nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.817626953125	2	531.818941	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.845	1	85.929	85.429	86.429	0.084251								0	0	0	0.25631	1	22561	22561		4.3292	2.0265	1		+		40581	18036	23560	23561	49254	49254					0.09498308748334239
RTKIALEL	8	Unmodified	_RTKIALEL_					0	0	0			REV__ENSG00000047315|ENST00000314595|POLR2B	REV__ENSG00000047315|ENST00000314595|POLR2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.75579833984375	2	472.300384	942.586216	0.18928	8.9395E-05	-0.45456	-0.00021469	-0.26528	-0.00012529	472.30008429156766	17.552	0.4636	17.491	17.241	17.704	-0.060429					30	15	3	0	0	0	0.34437	1	1719	1719		0.69038	0	1	73355	+		40582	13541	23561	23562	49255	49255					0.11262637202537462
RTKIALEL	8	Unmodified	_RTKIALEL_					0	0	0			REV__ENSG00000047315|ENST00000314595|POLR2B	REV__ENSG00000047315|ENST00000314595|POLR2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	472.300384	942.586216	-0.010244	-4.8384E-06	-0.015407	-7.2766E-06	-0.025651	-1.2115E-05	472.3002374340722	17.526	0.49815	17.409	17.259	17.757	-0.11739	-0.041263	0.00024232	NaN	0.69038	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72645	+		40583	13541	23561	23562							0.11262637202537462
RTKIVKIHSH	10	Unmodified	_RTKIVKIHSH_					0	0	0			REV__ENST00000493884.5_1_1:159023280-159024688:+|nuORF	REV__ENST00000493884.5_1_1:159023280-159024688:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.91827392578125	3	406.919168	1217.73567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.05	1	103.05	102.55	103.55	-0.0011139								0	0	0	0.38198	1	27426	27426		0.62683	0	1		+		40584	17070	23562	23563	49256	49256					0.1355158254516482
RTKKEVLR	8	Unmodified	_RTKKEVLR_					0	0	0			REV__nc|ENSG00000065534|Q15746-4|MYLK	REV__nc|ENSG00000065534|Q15746-4|MYLK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7715454101562	2	515.330008	1028.64546	0.2298	0.00011843	-0.79113	-0.00040769	-0.56133	-0.00028927	515.3294003859511	16.578	0.25389	16.578	16.405	16.659	0					18	8	3	0	0	0	0.34294	1	1379	1379		7.2892	0	1	36299	+		40585	13667	23563	23564	49257	49257					0.1322853321673847
RTKKEVLR	8	Unmodified	_RTKKEVLR_					0	0	0			REV__nc|ENSG00000065534|Q15746-4|MYLK	REV__nc|ENSG00000065534|Q15746-4|MYLK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7713623046875	2	515.330008	1028.64546	0.045588	2.3493E-05	-0.30175	-0.0001555	-0.25616	-0.00013201	515.3296384587421	16.72	0.30167	16.605	16.448	16.749	-0.11434					17	10	2	0	0	0	0.34294	1	1410	1410		7.2892	0	1	38889	+		40586	13667	23563	23564	49258	49258					0.1322853321673847
RTKKSNAL	8	Unmodified	_RTKKSNAL_					0	0	0			REV__USPL1|p.N623Yfs*18|1|0.33|ENSG00000132952|chr13:30657943-30657944|CA/-|frameshift_variant	REV__USPL1|p.N623Yfs*18|1|0.33|ENSG00000132952|chr13:30657943-30657944|CA/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.27978515625	2	459.279983	916.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.545	1	78.514	78.014	79.014	-0.030434								0	0	0	0.35985	1	20311	20311		10.183	0.83596	1		+		40587	15598	23564	23565	49259	49259					0.08380295882943756
RTKKVGIVGK	10	Unmodified	_RTKKVGIVGK_					0	0	0		ENST00000487233.1_1_2:217363570-217364184:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3614501953125	2	543.361308	1084.70806	0.13581	7.3795E-05	0.015776	8.572E-06	0.15159	8.2367E-05	543.3612947598888	13.269	0.27741	13.269	13.118	13.396	0					19	9	3	0	0	0	0.30656	1	377	377		19.626	7.3853	1	130540			40588	7997	23565	23566	49260	49260					0.1690967928493592
RTKKVGIVGK	10	Unmodified	_RTKKVGIVGK_					0	0	0		ENST00000487233.1_1_2:217363570-217364184:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3611450195312	2	543.361308	1084.70806	0.19083	0.00010369	0.0074594	4.0532E-06	0.19828	0.00010774	543.3612373138617	13.331	0.22554	13.264	13.162	13.388	-0.067496					17	7	3	0	0	0	0.31396	1	398	398		18.721	6.4806	1	106490			40589	7997	23565	23566	49261	49261					0.1690967928493592
RTKQKRLHVL	10	Unmodified	_RTKQKRLHVL_					0	0	0			REV__nc|ENSG00000083937|Q9UQN3-2|CHMP2B	REV__nc|ENSG00000083937|Q9UQN3-2|CHMP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.9417419433594	3	426.942084	1277.80442	0.27542	0.00011759	-0.58148	-0.00024826	-0.30606	-0.00013067	426.941917602408	37.542	1.7511	37.542	37.207	38.958	0					188	62	6	0	0	0	0.32099	1	7877	7877		17.863	2.906	1	10811000	+		40590	13941	23566	23567	49262	49262					0.17663246844881542
RTKRKISF	8	Unmodified	_RTKRKISF_					0	0	0		ENST00000527884.5_1_11:19259645-19261688:-|nuORF	ENST00000527884.5_1_11:19259645-19261688:-|nuORF	ENST00000527884.5_1_11:19259645-19261688:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.748779296875	2	518.324725	1034.6349	0.66856	0.00034653	-0.76106	-0.00039448	-0.092503	-4.7946E-05	518.3242458748418	36.833	0.23723	36.926	36.713	36.951	0.093014					10	8	2	0	0	0	0.344	1	7522	7522		2.5775	0	1	75931			40591	11573	23567	23568	49263	49263					0.11896550562300945
RTKRTPGP	8	Unmodified	_RTKRTPGP_					0	0	0		ENSG00000083457|ENST00000263087|ITGAE	ENSG00000083457|ENST00000263087|ITGAE	ENSG00000083457|ENST00000263087|ITGAE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.23516845703125	2	456.772326	911.530098	0.0081277	3.7125E-06	0.47278	0.00021595	0.48091	0.00021967	456.77255023013527	18.038	0.52789	18.038	17.771	18.299	0					27	17	2	0	0	0	0.34353	1	1736	1736		4.756	2.1785	1	125220			40592	1221	23568	23569	49264	49264					0.07079429085740685
RTLDRLRTF	9	Unmodified	_RTLDRLRTF_					0	0	0		nc|ENSG00000152409|Q8N9B5-2|JMY;ENSG00000152409|ENST00000396137|JMY	nc|ENSG00000152409|Q8N9B5-2|JMY	nc|ENSG00000152409|Q8N9B5-2|JMY	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3446044921875	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.43	1	114.45	113.95	114.95	0.016708								0	0	0	0.2672	1	29757	29757		0.52476	0	1				40593	5020	23569	23570	49265	49265					0.09147016757128767
RTLENPEPLLR	11	Unmodified	_RTLENPEPLLR_					0	0	0		ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.2820129394531	3	446.589376	1336.7463	0.44657	0.00019944	-1.3685	-0.00061116	-0.92194	-0.00041173	446.58868273790006	38.765	0.31094	38.865	38.735	39.046	0.099407					16	10	2	0	0	0	0.33207	1	8141	8141		5.5233	2.451	1	123460			40594	8073	23570	23571	49266	49266					0.09139520408916724
RTLEPLAKK	9	Unmodified	_RTLEPLAKK_					0	0	0		ENST00000470216.1_1_2:37426847-37428252:+|nuORF;ENSG00000218739|ENST00000402297|CEBPZOS	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2833862304688	2	528.332216	1054.64988	0.3978	0.00021017	-0.16541	-8.739E-05	0.23239	0.00012278	528.3320460131067	16.262	0.49339	16.2	15.975	16.468	-0.062534					32	16	3	0	0	0	0.25689	1	1275	1275		7.609	4.3276	1	80507			40595	8415	23571	23572	49267	49267					0.12473997639631307
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.6343078613281	3	501.634424	1501.88144	0.29699	0.00014898	-0.69104	-0.00034665	-0.39405	-0.00019767	501.63424895777393	92.395	1.4147	92.395	91.239	92.654	0					242	103	4	0	0	0	0.48173	2	24549	24549;24642		0.50596	0.094841	1	867980			40596	5531	23572	23573	49268;49269	49268					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.6343078613281	3	501.634424	1501.88144	0.2222	0.00011146	-0.44396	-0.00022271	-0.22176	-0.00011124	501.63422598277015	93.839	0.47671	93.839	93.572	94.048	0					125	35	4	0	0	0	0.48173	1	24949	24949		0.50596	0.50596	1	913330			40597	5531	23572	23573	49270	49270					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.634521484375	3	501.634424	1501.88144	0.15108	7.5789E-05	-0.13551	-6.7975E-05	0.015576	7.8133E-06	501.63441285938063	94.806	3.9031	94.806	94.003	97.906	0					1129	375	5	0	0	0	0.46554	12	25305	25119;25158;25194;25230;25268;25305;25344;25383;25422;25599;25636;25684		2.6312	2.5364	1	2796100			40598	5531	23572	23573	49271;49272;49273;49274;49275;49276;49277;49278;49279;49280;49281;49282	49276					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.6346435546875	3	501.634424	1501.88144	0.25849	0.00012967	-0.06044	-3.0319E-05	0.19805	9.9349E-05	501.63439701827343	94.69	1.0416	94.773	94.011	95.053	0.082779					367	85	6	0	0	0	0.46554	5	25279	25125;25204;25238;25279;25319		2.6312	2.223	1	5155200			40599	5531	23572	23573	49283;49284;49285;49286;49287	49286					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.63458251953125	3	501.634424	1501.88144	0.23484	0.0001178	-0.058594	-2.9393E-05	0.17624	8.8411E-05	501.6344351919867	95.214	2.0782	95.297	94.981	97.06	0.082779					665	194	5	0	0	0	0.46554	4	25432	25432;25467;25505;25579		2.6312	1.6177	1	3441800			40600	5531	23572	23573	49288;49289;49290;49291	49288					0.15057858113891598
RTLFRGRRRRE	11	Unmodified	_RTLFRGRRRRE_					0	0	0		nc|ENSG00000161813|Q71RC2-5|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	nc|ENSG00000161813|Q71RC2-5|LARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.63433837890625	3	501.634424	1501.88144	0.49653	0.00024908	-0.61664	-0.00030933	-0.12011	-6.0252E-05	501.6341587035499	92.367	0.84666	92.367	91.832	92.678	0.00047302					172	55	4	0	0	0	0.47633	2	24573	24573;24619		1.2148	0.76031	1	1345500			40601	5531	23572	23573	49292;49293	49292					0.15057858113891598
RTLHVRYRL	9	Unmodified	_RTLHVRYRL_					0	0	0			REV__L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|3|1|sense	REV__L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|3|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.3692016601562	2	607.367456	1212.72036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.31	1	116.31	115.81	116.81	0								0	0	0	0.26746	1	30113	30113		0.40072	0.050084	1		+		40602	22777	23573	23574	49294	49294					0.12250715747995855
RTLPVLLLY	9	Unmodified	_RTLPVLLLY_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.3472900390625	2	544.347335	1086.68012	0.55802	0.00030376	-0.094162	-5.1257E-05	0.46386	0.0002525	544.347163299862	72.355	0.83269	72.355	72.048	72.881	0					64	30	3	0	0	0	0.13748	1	18430	18430		32.786	10.049	1	448580			40603	2674	23574	23575	49295	49295					0.1402435630486707
RTLPVLLLY	9	Unmodified	_RTLPVLLLY_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.347412109375	2	544.347335	1086.68012	0.76339	0.00041555	-0.28242	-0.00015374	0.48096	0.00026181	544.3470366538845	72.331	0.89331	72.388	72.033	72.926	0.056572					65	32	3	0	0	0	0.16283	1	18401	18401		29.082	6.3453	1	451240			40604	2674	23574	23575	49296	49296					0.1402435630486707
RTLPVLLLY	9	Unmodified	_RTLPVLLLY_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3474731445312	2	544.347335	1086.68012	0.71197	0.00038756	-0.26291	-0.00014311	0.44906	0.00024444	544.3470974206286	72.383	0.80779	72.356	72.068	72.875	-0.027275					57	28	3	0	0	0	0.13748	1	18440	18440		32.786	10.049	1	612330			40605	2674	23574	23575	49297	49297					0.1402435630486707
RTLQQMLLK	9	Oxidation (M)	_RTLQQM(Oxidation (M))LLK_		RTLQQM(1)LLK		RTLQQM(63)LLK	0	0	1		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.8370971679688	2	573.836808	1145.65906	0.29044	0.00016666	0.088872	5.0998E-05	0.37931	0.00021766	573.836808151928	30.464	0.48148	30.464	30.167	30.648	0					44	16	3	0	0	0	0.022205	1	5555	5555		63.227	9.8235	1	1187100			40606	1468	23575	23576	49298	49298		183			0.09206022933653912
RTLQQMLLK	9	Oxidation (M)	_RTLQQM(Oxidation (M))LLK_		RTLQQM(1)LLK		RTLQQM(53)LLK	0	0	1		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.8369750976562	2	573.836808	1145.65906	-0.028898	-1.6583E-05	0.48424	0.00027787	0.45534	0.00026129	573.8369757034842	30.441	0.41773	30.468	30.22	30.638	0.027157					39	14	3	0	0	0	0.048871	1	5559	5559		53.317	9.3349	1	1098100			40607	1468	23575	23576	49299	49299		183			0.09206022933653912
RTLSDVLQY	9	Unmodified	_RTLSDVLQY_					0	0	0		nc|ENSG00000127241|P48740-4|MASP1;ENSG00000127241|ENST00000296280|MASP1	nc|ENSG00000127241|P48740-4|MASP1	nc|ENSG00000127241|P48740-4|MASP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3612060546875	2	547.795663	1093.57677	0.47926	0.00026254	0.76208	0.00041746	1.2413	0.00068	547.7959643161147	52.495	0.50076	52.495	52.267	52.767	0					30	17	2	0	0	0	0.21538	1	12303	12303		20.415	6.5085	1	615610			40608	3309	23576	23577	49300	49300					0.03372824126381602
RTLSDVLQY	9	Unmodified	_RTLSDVLQY_					0	0	0		nc|ENSG00000127241|P48740-4|MASP1;ENSG00000127241|ENST00000296280|MASP1	nc|ENSG00000127241|P48740-4|MASP1	nc|ENSG00000127241|P48740-4|MASP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7962646484375	2	547.795663	1093.57677	0.43141	0.00023633	0.54906	0.00030078	0.98048	0.0005371	547.7959905857049	52.653	0.48711	52.652	52.411	52.898	-0.00080872					31	17	2	0	0	0	0.18936	1	12381	12381		32.786	10.049	1	868010			40609	3309	23576	23577	49301	49301					0.03372824126381602
RTLSDVLQY	9	Unmodified	_RTLSDVLQY_					0	0	0		nc|ENSG00000127241|P48740-4|MASP1;ENSG00000127241|ENST00000296280|MASP1	nc|ENSG00000127241|P48740-4|MASP1	nc|ENSG00000127241|P48740-4|MASP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	547.795663	1093.57677	0.59811	0.00032764	0.64237	0.00035189	1.2405	0.00067953	547.7959646453586	52.366	0.56618	52.417	52.282	52.848	0.050571	-0.10445	-5.2721E-06	NaN	32.786	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	511830			40610	3309	23576	23577							0.03372824126381602
RTLSDYNIQK	10	Unmodified	_RTLSDYNIQK_					0	0	0		ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000597285.1_1_19:7730614-7730836:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.3302001953125	2	619.330402	1236.64625	-0.090632	-5.6131E-05	0.17337	0.00010737	0.082737	5.1241E-05	619.3304478078543	28.215	0.65707	28.215	27.954	28.611	0					59	22	4	0	0	0	0.0050981	2	4862	4862;4920		91.085	43.49	1	889540			40611	11224	23577	23578	49302;49303	49302					0.037392830751286965
RTLSDYNIQK	10	Unmodified	_RTLSDYNIQK_					0	0	0		ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000597285.1_1_19:7730614-7730836:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.5725402832031	3	413.222693	1236.64625	-0.3849	-0.00015905	-0.39769	-0.00016434	-0.7826	-0.00032339	413.2224211288612	28.204	0.78861	28.204	27.789	28.578	0					57	27	3	0	0	0	0.31704	1	4980	4980		8.2864	0	1	604330			40612	11224	23577	23578	49304	49304					0.037392830751286965
RTLSDYNIQK	10	Unmodified	_RTLSDYNIQK_					0	0	0		ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000597285.1_1_19:7730614-7730836:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.3303833007812	2	619.330402	1236.64625	-0.13086	-8.1047E-05	0.11976	7.4173E-05	-0.011098	-6.8736E-06	619.3304197459337	28.24	0.57956	28.235	27.94	28.519	-0.0042572					57	20	4	0	0	0	0.00067342	2	4915	4866;4915		125.18	61.221	1	677630			40613	11224	23577	23578	49305;49306	49306					0.037392830751286965
RTLSDYNIQK	10	Unmodified	_RTLSDYNIQK_					0	0	0		ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;ENST00000597285.1_1_19:7730614-7730836:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	ENST00000495843.1_1_2:55459960-55461412:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.3305053710938	2	619.330402	1236.64625	-0.14674	-9.0881E-05	0.10599	6.5641E-05	-0.040753	-2.524E-05	619.3304494256159	28.167	0.61563	28.167	27.935	28.55	0.00046921					61	21	4	0	0	0	0.00094814	2	4851	4851;4898		121.5	59.556	1	873220			40614	11224	23577	23578	49307;49308	49307					0.037392830751286965
RTLSPSPRRSS	11	Unmodified	_RTLSPSPRRSS_					0	0	0			REV__ENST00000598871.5_1_19:47104691-47111528:+|nuORF	REV__ENST00000598871.5_1_19:47104691-47111528:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8490600585938	2	622.346917	1242.67928	0.37438	0.000233	0.4153	0.00025846	0.78968	0.00049145	622.347035965394	85.773	3.0068	85.764	84.921	87.928	-0.0090103					276	128	4	0	0	0	0.46655	2	22293	22293;22947		2.4985	0.65425	1	1118300	+		40615	22622	23578	23579	49309;49310	49309					0.06764909917865225
RTLSRRGRPR	10	Unmodified	_RTLSRRGRPR_					0	0	0			REV__ENST00000537025.6_1_17:66032076-66032340:+|nuORF	REV__ENST00000537025.6_1_17:66032076-66032340:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.8848876953125	2	627.884336	1253.75412	0.091485	5.7442E-05	0.69723	0.00043778	0.78871	0.00049522	627.8851805258483	91.61	0.89442	91.701	91.435	92.33	0.090668					119	62	2	0	0	0	0.39009	1	24359	24359		5.2969	5.2969	1	966210	+		40616	22089	23579	23580	49311	49311					0.1373913723973601
RTLSRSRRHP	10	Unmodified	_RTLSRSRRHP_					0	0	0			REV__ENST00000462833.5_1_3:123167964-123168408:-|nuORF	REV__ENST00000462833.5_1_3:123167964-123168408:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3688354492188	2	633.368518	1264.72248	0.53834	0.00034097	0.025525	1.6167E-05	0.56387	0.00035714	633.3684116178885	85.58	1.5522	85.58	85.069	86.621	0					281	60	5	0	0	0	0.38773	1	22523	22523		5.7319	5.7319	1	6556300	+		40617	21238	23580	23581	49312	49312					0.1007114448577795
RTLSRSRRHP	10	Unmodified	_RTLSRSRRHP_					0	0	0			REV__ENST00000462833.5_1_3:123167964-123168408:-|nuORF	REV__ENST00000462833.5_1_3:123167964-123168408:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.368896484375	2	633.368518	1264.72248	0.66806	0.00042313	-0.060172	-3.8111E-05	0.60788	0.00038501	633.3683827019042	85.744	1.5451	85.735	85.09	86.636	-0.0090027					257	58	5	0	0	0	0.38773	1	22466	22466		5.7319	5.7319	1	6345200	+		40618	21238	23580	23581	49313	49313					0.1007114448577795
RTMDLVLEM	9	2 Oxidation (M)	_RTM(Oxidation (M))DLVLEM(Oxidation (M))_		RTM(1)DLVLEM(1)		RTM(42)DLVLEM(42)	0	0	2		ENST00000512009.5_1_5:64960022-64960435:+|nuORF;nc|ENSG00000113597|A5PLN9-2|TRAPPC13;nc|ENSG00000113597|A5PLN9-4|TRAPPC13;ENSG00000113597|ENST00000399438|TRAPPC13;nc|ENSG00000113597|A5PLN9-5|TRAPPC13	ENST00000512009.5_1_5:64960022-64960435:+|nuORF	ENST00000512009.5_1_5:64960022-64960435:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2755126953125	2	570.275392	1138.53623	0.41818	0.00023847	-0.41835	-0.00023858	-0.0001755	-1.0008E-07	570.2752310032645	38.461	0.54065	38.552	38.294	38.834	0.090881					39	19	3	0	0	0	0.07944	1	8012	8012		41.956	21.541	1	372700			40619	2516	23581	23582	49314	49314		309;310			-0.027496015799215456
RTMDLVLEM	9	2 Oxidation (M)	_RTM(Oxidation (M))DLVLEM(Oxidation (M))_					0	0	2		ENST00000512009.5_1_5:64960022-64960435:+|nuORF;nc|ENSG00000113597|A5PLN9-2|TRAPPC13;nc|ENSG00000113597|A5PLN9-4|TRAPPC13;ENSG00000113597|ENST00000399438|TRAPPC13;nc|ENSG00000113597|A5PLN9-5|TRAPPC13	ENST00000512009.5_1_5:64960022-64960435:+|nuORF	ENST00000512009.5_1_5:64960022-64960435:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	570.275392	1138.53623	-0.005851	-3.3367E-06	-0.66929	-0.00038168	-0.67514	-0.00038501	570.2753805133606	38.527	0.57839	38.527	38.295	38.873	0	0.0071994	-0.00036884	NaN	41.956	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333930			40620	2516	23581	23582				309;310			-0.027496015799215456
RTMDLVLEM	9	2 Oxidation (M)	_RTM(Oxidation (M))DLVLEM(Oxidation (M))_					0	0	2		ENST00000512009.5_1_5:64960022-64960435:+|nuORF;nc|ENSG00000113597|A5PLN9-2|TRAPPC13;nc|ENSG00000113597|A5PLN9-4|TRAPPC13;ENSG00000113597|ENST00000399438|TRAPPC13;nc|ENSG00000113597|A5PLN9-5|TRAPPC13	ENST00000512009.5_1_5:64960022-64960435:+|nuORF	ENST00000512009.5_1_5:64960022-64960435:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	570.275392	1138.53623	0.3028	0.00017268	-0.19695	-0.00011232	0.10585	6.0365E-05	570.2753623971291	38.383	0.57169	38.48	38.266	38.838	0.097527	-0.039202	0.00016988	NaN	41.956	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328260			40621	2516	23581	23582				309;310			-0.027496015799215456
RTMLELLN	8	Unmodified	_RTMLELLN_					0	0	0		ENST00000555787.1_1_14:90734518-90735894:+|nuORF;nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000441073.1_1_9:19027536-19027863:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENSG00000165916|ENST00000298852|PSMC3	ENST00000555787.1_1_14:90734518-90735894:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000165916|ENST00000298852|PSMC3	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7461242675781	2	495.276052	988.537551	0.22468	0.00011128	-0.24263	-0.00012017	-0.017943	-8.8866E-06	495.27590790170393	18.461	0.61024	18.344	18.151	18.761	-0.11739					29	20	2	0	0	0	0.34337	1	1948	1948		5.2307	0	1	56660			40622	1298;1629;6011	23582	23583	49315	49315					0.04282400571150902
RTMLELLN	8	Unmodified	_RTMLELLN_					0	0	0		ENST00000555787.1_1_14:90734518-90735894:+|nuORF;nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000441073.1_1_9:19027536-19027863:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENSG00000165916|ENST00000298852|PSMC3	ENST00000555787.1_1_14:90734518-90735894:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000165916|ENST00000298852|PSMC3	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	495.276052	988.537551	0.27238	0.0001349	-0.36036	-0.00017848	-0.087976	-4.3573E-05	495.2759344736215	18.389	0.39957	18.389	18.188	18.588	0	0.00060948	-8.5032E-05	NaN	5.2307	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46738			40623	1298;1629;6011	23582	23583							0.04282400571150902
RTMPLLSLHSR	11	Oxidation (M)	_RTM(Oxidation (M))PLLSLHSR_		RTM(1)PLLSLHSR		RTM(50)PLLSLHSR	0	0	1		ENSG00000104904|ENST00000602676|OAZ1;ENST00000592787.2_1_19:2269573-2271441:+|nuORF	ENSG00000104904|ENST00000602676|OAZ1	ENSG00000104904|ENST00000602676|OAZ1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.9151306152344	3	442.915206	1325.72379	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.233	1	28.233	27.733	28.733	0								0	0	0	0.069941	1	4897	4897		49.842	19.488	1				40624	1935	23583	23584	49316	49316		237			0.07395597739673576
RTMPLLSLHSR	11	Oxidation (M)	_RTM(Oxidation (M))PLLSLHSR_		RTM(1)PLLSLHSR		RTM(46)PLLSLHSR	0	0	1		ENSG00000104904|ENST00000602676|OAZ1;ENST00000592787.2_1_19:2269573-2271441:+|nuORF	ENSG00000104904|ENST00000602676|OAZ1	ENSG00000104904|ENST00000602676|OAZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.9151611328125	3	442.915206	1325.72379	-0.16388	-7.2584E-05	0.047921	2.1225E-05	-0.11596	-5.1359E-05	442.9152084855319	27.962	0.78376	27.962	27.626	28.41	0.0004673					76	27	4	0	0	0	0.073872	1	4883	4883		46.34	15.986	1	269900			40625	1935	23583	23584	49317	49317		237			0.07395597739673576
RTMPLLSLHSR	11	Oxidation (M)	_RTM(Oxidation (M))PLLSLHSR_					0	0	1		ENSG00000104904|ENST00000602676|OAZ1;ENST00000592787.2_1_19:2269573-2271441:+|nuORF	ENSG00000104904|ENST00000602676|OAZ1	ENSG00000104904|ENST00000602676|OAZ1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	442.915206	1325.72379	-0.16942	-7.504E-05	0.064876	2.8734E-05	-0.10455	-4.6305E-05	442.9152222271046	28.173	0.86283	28.169	27.632	28.495	-0.0042553	0.15428	5.4511E-07	NaN	46.34	74	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282560			40626	1935	23583	23584				237			0.07395597739673576
RTNAIDFLMDR	11	Unmodified	_RTNAIDFLMDR_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7869567871094	3	451.231083	1350.67142	0.045635	2.0592E-05	0.22902	0.00010334	0.27466	0.00012393	451.2312311515623	18.379	0.84469	18.379	18.051	18.895	0					64	29	3	0	0	0	0.33334	1	1873	1873		1.2148	0	1	234860			40627	1773	23584	23585	49318	49318					0.010110146060242187
RTNEVVAIK	9	Unmodified	_RTNEVVAIK_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000160551|Q7L7X3-3|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.30615234375	2	515.306198	1028.59784	0.41257	0.0002126	0.30097	0.00015509	0.71353	0.00036769	515.3062561794044	20.606	0.45946	20.606	20.423	20.883	0					35	15	3	0	0	0	0.26807	1	2579	2579		13.615	1.3742	1	170470			40628	5469	23585	23586	49319	49319					0.08468834225868704
RTNEVVAIK	9	Unmodified	_RTNEVVAIK_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000160551|Q7L7X3-3|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3063354492188	2	515.306198	1028.59784	0.5489	0.00028285	0.032498	1.6746E-05	0.5814	0.0002996	515.3061289794165	20.803	0.59747	20.693	20.466	21.063	-0.11003					40	20	3	0	0	0	0.23612	1	2636	2636		18.373	3.1246	1	187880			40629	5469	23585	23586	49320	49320					0.08468834225868704
RTNEVVAIK	9	Unmodified	_RTNEVVAIK_					0	0	0		ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000160551|Q7L7X3-3|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	ENSG00000160551|ENST00000261716|TAOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.3065185546875	2	515.306198	1028.59784	0.44405	0.00022882	0.32282	0.00016635	0.76687	0.00039517	515.30626219082	20.722	0.58947	20.669	20.387	20.977	-0.05291					44	20	3	0	0	0	0.23612	2	2624	2624;2658		18.373	5.4593	1	157230			40630	5469	23585	23586	49321;49322	49321					0.08468834225868704
RTNNILLPR	9	Unmodified	_RTNNILLPR_					0	0	0		ENST00000371648.4_1_9:139757810-139758292:-|nuORF	ENST00000371648.4_1_9:139757810-139758292:-|nuORF	ENST00000371648.4_1_9:139757810-139758292:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.802490234375	2	548.832914	1095.65128	0.39133	0.00021478	-0.12336	-6.7705E-05	0.26797	0.00014707	548.8328153269915	31.081	0.34674	31.114	30.95	31.297	0.032461					14	12	2	0	0	0	0.25123	1	5749	5749		12.241	0.74595	1	91272			40631	9827	23586	23587	49323	49323					0.10727631728400411
RTPKKPSLSSL	11	Unmodified	_RTPKKPSLSSL_					0	0	0			REV__nc|ENSG00000105559|Q9H4M7-2|PLEKHA4	REV__nc|ENSG00000105559|Q9H4M7-2|PLEKHA4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.26031494140625	3	405.24695	1212.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.284	1	72.257	71.757	72.757	-0.027275								0	0	0	0.32191	1	18405	18405		8.2864	1.2493	1		+		40632	14464	23587	23588	49324	49324					0.12117036868562536
RTPLEQEI	8	Unmodified	_RTPLEQEI_					0	0	0		UTP14A|p.I484Mfs*38|1|0.07|ENSG00000156697|chrX:129924877-129924878|-/GCAAGTTCAGAGGGGACTAT|frameshift_variant;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A;ENSG00000253797|ENST00000521776|UTP14C	UTP14A|p.I484Mfs*38|1|0.07|ENSG00000156697|chrX:129924877-129924878|-/GCAAGTTCAGAGGGGACTAT|frameshift_variant;ENSG00000253797|ENST00000521776|UTP14C	ENSG00000253797|ENST00000521776|UTP14C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.28466796875	2	493.269281	984.52401	0.34526	0.00017031	-0.20526	-0.00010125	0.14	6.9059E-05	493.2690794502461	40.096	1.1006	40.096	39.695	40.796	0					90	39	4	0	0	0	0.42371	1	8486	8486		14.838	0	1	1570300			40633	5250;8604	23588	23589	49325	49325					0.031128660635772576
RTPLEQEI	8	Unmodified	_RTPLEQEI_					0	0	0		UTP14A|p.I484Mfs*38|1|0.07|ENSG00000156697|chrX:129924877-129924878|-/GCAAGTTCAGAGGGGACTAT|frameshift_variant;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A;ENSG00000253797|ENST00000521776|UTP14C	UTP14A|p.I484Mfs*38|1|0.07|ENSG00000156697|chrX:129924877-129924878|-/GCAAGTTCAGAGGGGACTAT|frameshift_variant;ENSG00000253797|ENST00000521776|UTP14C	ENSG00000253797|ENST00000521776|UTP14C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2846374511719	2	493.269281	984.52401	0.53656	0.00026467	-0.27917	-0.0001377	0.25739	0.00012696	493.2690457868575	39.871	0.78503	39.964	39.662	40.448	0.09267					64	27	3	0	0	0	0.35947	1	8450	8450		24.021	3.5669	1	1932000			40634	5250;8604	23588	23589	49326	49326					0.031128660635772576
RTPLEQEI	8	Unmodified	_RTPLEQEI_					0	0	0		UTP14A|p.I484Mfs*38|1|0.07|ENSG00000156697|chrX:129924877-129924878|-/GCAAGTTCAGAGGGGACTAT|frameshift_variant;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A;ENSG00000253797|ENST00000521776|UTP14C	UTP14A|p.I484Mfs*38|1|0.07|ENSG00000156697|chrX:129924877-129924878|-/GCAAGTTCAGAGGGGACTAT|frameshift_variant;ENSG00000253797|ENST00000521776|UTP14C	ENSG00000253797|ENST00000521776|UTP14C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2847595214844	2	493.269281	984.52401	0.38918	0.00019197	-0.21591	-0.0001065	0.17326	8.5465E-05	493.2690812830675	39.86	1.019	39.959	39.622	40.641	0.099403					76	36	3	0	0	0	0.39068	1	8444	8444		20.454	0	1	1795800			40635	5250;8604	23588	23589	49327	49327					0.031128660635772576
RTQDPNTIFR	10	Unmodified	_RTQDPNTIFR_					0	0	0		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.5540771484375	3	416.554554	1246.64183	0.15829	6.5938E-05	-0.51245	-0.00021346	-0.35416	-0.00014753	416.55434223711313	29.38	0.7521	29.38	29.193	29.945	0					60	26	3	0	0	0	0.34181	1	5284	5284		14.171	7.1336	1	305330			40636	7579	23589	23590	49328	49328					0.028378186522104443
RTQDPNTIFR	10	Unmodified	_RTQDPNTIFR_					0	0	0		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.5543518066406	3	416.554554	1246.64183	0.24145	0.00010058	-0.39804	-0.0001658	-0.15659	-6.5229E-05	416.5543195186093	29.325	1.1152	29.337	28.802	29.917	0.012266					86	38	3	0	0	0	0.23653	1	5250	5250		28.181	18.937	1	334730			40637	7579	23589	23590	49329	49329					0.028378186522104443
RTQDPNTIFR	10	Unmodified	_RTQDPNTIFR_					0	0	0		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.5543518066406	3	416.554554	1246.64183	0.0011065	4.6094E-07	-0.57852	-0.00024099	-0.57742	-0.00024052	416.5542512815209	29.422	0.92953	29.436	29.166	30.095	0.013474					48	31	2	0	0	0	0.29334	1	5271	5271		21.241	14.204	1	287020			40638	7579	23589	23590	49330	49330					0.028378186522104443
RTQGLMIMK	9	2 Oxidation (M)	_RTQGLM(Oxidation (M))IM(Oxidation (M))K_		RTQGLM(1)IM(1)K		RTQGLM(51)IM(51)K	0	0	2		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2938842773438	2	555.293919	1108.57328	0.44064	0.00024468	-1.0177	-0.00056511	-0.57705	-0.00032043	555.2937139877	19.939	0.7534	19.883	19.571	20.324	-0.055693					87	27	4	0	0	0	0.053792	1	2379	2379		51.488	23.859	1	2308800			40639	4041	23590	23591	49331	49331		509;510			0.023341147565133724
RTQGSSFLK	9	Unmodified	_RTQGSSFLK_					0	0	0		ENST00000509709.1_1_4:86643053-86643119:+|nuORF	ENST00000509709.1_1_4:86643053-86643119:+|nuORF	ENST00000509709.1_1_4:86643053-86643119:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2830810546875	2	512.282723	1022.55089	0.076618	3.925E-05	0.30219	0.00015481	0.37881	0.00019406	512.2827474035514	18.964	0.59319	18.847	18.582	19.175	-0.11739					48	20	3	0	0	0	0.2719	1	2091	2091		13.042	1.5478	1	186250			40640	11363	23591	23592	49332	49332					0.040519746747463614
RTQIKSGRRD	10	Unmodified	_RTQIKSGRRD_					0	0	0			REV__nc|ENSG00000138768|O60763-2|USO1	REV__nc|ENSG00000138768|O60763-2|USO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8485107421875	2	608.847084	1215.67962	0.60993	0.00037135	-0.31768	-0.00019342	0.29225	0.00017794	608.8469691643318	84.631	1.7943	84.631	84.405	86.2	0					202	67	4	0	0	0	0.40262	1	22570	22570		2.9952	0	1	2172800	+		40641	23012	23592	23593	49333	49333					0.08040329637719879
RTQIKSGRRD	10	Unmodified	_RTQIKSGRRD_					0	0	0			REV__nc|ENSG00000138768|O60763-2|USO1	REV__nc|ENSG00000138768|O60763-2|USO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.84765625	2	608.847084	1215.67962	0.60642	0.00036922	-0.060974	-3.7124E-05	0.54545	0.0003321	608.8470173384787	83.949	2.9587	84.026	83.243	86.202	0.077095					317	115	4	0	0	0	0.40262	1	22370	22370		2.9952	0	1	2064800	+		40642	23012	23592	23593	49334	49334					0.08040329637719879
RTQKKYFAK	9	Unmodified	_RTQKKYFAK_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.3430786132812	2	585.343115	1168.67168	-0.014985	-8.7714E-06	0.073445	4.2991E-05	0.05846	3.4219E-05	585.343169002644	12.967	0.30345	12.967	12.815	13.118	0					29	10	4	0	0	0	0.11201	1	278	278		36.506	23.464	1	185300			40643	4177	23593	23594	49335	49335					0.09408802388225013
RTQKKYFAK	9	Unmodified	_RTQKKYFAK_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.3430786132812	2	585.343115	1168.67168	-0.06564	-3.8422E-05	0.33915	0.00019852	0.27351	0.0001601	585.343193262523	13.042	0.31158	12.942	12.785	13.097	-0.099291					25	10	3	0	0	0	0.26807	1	296	296		13.615	4.8695	1	182660			40644	4177	23593	23594	49336	49336					0.09408802388225013
RTQKKYFAK	9	Unmodified	_RTQKKYFAK_					0	0	0		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.3433227539062	2	585.343115	1168.67168	-0.069616	-4.0749E-05	0.3338	0.00019539	0.26418	0.00015464	585.3431622510084	12.992	0.28239	12.924	12.791	13.073	-0.067496					25	9	4	0	0	0	0.23612	1	286	286		18.373	8.99	1	187840			40645	4177	23593	23594	49337	49337					0.09408802388225013
RTQMPDPKTFK	11	Oxidation (M)	_RTQM(Oxidation (M))PDPKTFK_		RTQM(1)PDPKTFK		RTQM(63)PDPKTFK	0	0	1		ENSG00000120963|ENST00000311212|ZNF706	ENSG00000120963|ENST00000311212|ZNF706	ENSG00000120963|ENST00000311212|ZNF706	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.5711364746094	3	455.571216	1363.69182	0.016221	7.3896E-06	-0.27648	-0.00012596	-0.26026	-0.00011857	455.57106763400435	18.117	0.73136	18.117	17.66	18.391	0					96	24	5	0	0	0	0.015686	2	1829	1829;1871		63.164	51.532	1	770540			40646	2979	23594	23595	49338;49339	49338		372			0.02452185265838125
RTQMPDPKTFK	11	Oxidation (M)	_RTQM(Oxidation (M))PDPKTFK_		RTQM(1)PDPKTFK		RTQM(56)PDPKTFK	0	0	1		ENSG00000120963|ENST00000311212|ZNF706	ENSG00000120963|ENST00000311212|ZNF706	ENSG00000120963|ENST00000311212|ZNF706	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.571044921875	3	455.571216	1363.69182	-0.050043	-2.2798E-05	-0.4291	-0.00019549	-0.47915	-0.00021829	455.57108819361986	18.717	1.0385	18.717	18.363	19.401	0					118	36	5	0	0	0	0.039328	1	2022	2022		56.328	44.1	1	859020			40647	2979	23594	23595	49340	49340		372			0.02452185265838125
RTQMPDPKTFK	11	Oxidation (M)	_RTQM(Oxidation (M))PDPKTFK_		RTQM(1)PDPKTFK		RTQM(59)PDPKTFK	0	0	1		ENSG00000120963|ENST00000311212|ZNF706	ENSG00000120963|ENST00000311212|ZNF706	ENSG00000120963|ENST00000311212|ZNF706	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.5710754394531	3	455.571216	1363.69182	-0.023131	-1.0538E-05	-0.28827	-0.00013133	-0.3114	-0.00014187	455.57108015122793	18.258	0.8699	18.141	17.631	18.501	-0.11739					97	29	5	0	0	0	0.028371	1	1892	1892		59.496	50.744	1	786500			40648	2979	23594	23595	49341	49341		372			0.02452185265838125
RTQMPDPKTFK	11	Oxidation (M)	_RTQM(Oxidation (M))PDPKTFK_		RTQM(1)PDPKTFK		RTQM(51)PDPKTFK	0	0	1		ENSG00000120963|ENST00000311212|ZNF706	ENSG00000120963|ENST00000311212|ZNF706	ENSG00000120963|ENST00000311212|ZNF706	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.5711669921875	3	455.571216	1363.69182	-0.017001	-7.745E-06	-0.36056	-0.00016426	-0.37756	-0.00017201	455.57109785383057	18.905	1.0725	18.788	18.414	19.486	-0.11739					122	37	5	0	0	0	0.056842	2	2096	2049;2096		51.264	42.512	1	896810			40649	2979	23594	23595	49342;49343	49343		372			0.02452185265838125
RTQMPDPKTFK	11	Oxidation (M)	_RTQM(Oxidation (M))PDPKTFK_		RTQM(1)PDPKTFK		RTQM(50)PDPKTFK	0	0	1		ENSG00000120963|ENST00000311212|ZNF706	ENSG00000120963|ENST00000311212|ZNF706	ENSG00000120963|ENST00000311212|ZNF706	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.5710754394531	3	455.571216	1363.69182	-0.12929	-5.89E-05	-0.1917	-8.7331E-05	-0.32098	-0.00014623	455.5711363449147	18.294	0.7448	18.236	17.738	18.483	-0.058172					100	26	5	0	0	0	0.061759	1	1890	1890		49.842	40.312	1	863420			40650	2979	23594	23595	49344	49344		372			0.02452185265838125
RTQMPDPKTFK	11	Oxidation (M)	_RTQM(Oxidation (M))PDPKTFK_		RTQM(1)PDPKTFK		RTQM(50)PDPKTFK	0	0	1		ENSG00000120963|ENST00000311212|ZNF706	ENSG00000120963|ENST00000311212|ZNF706	ENSG00000120963|ENST00000311212|ZNF706	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.571044921875	3	455.571216	1363.69182	-0.16153	-7.3587E-05	-0.29028	-0.00013224	-0.4518	-0.00020583	455.5711463190818	18.82	0.99936	18.762	18.483	19.482	-0.058174					123	34	5	0	0	0	0.061759	2	2037	2037;2085		49.842	41.091	1	946480			40651	2979	23594	23595	49345;49346	49345		372			0.02452185265838125
RTQNVLGEK	9	Unmodified	_RTQNVLGEK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7932739257812	2	522.793455	1043.57236	0.23028	0.00012039	-0.57144	-0.00029874	-0.34116	-0.00017835	522.7931666233267	15.576	0.8307	15.576	15.232	16.063	0					76	28	4	0	0	0	0.002131	1	1078	1078		109.15	12.78	1	1106000			40652	4856	23595	23596	49347	49347					0.05231359703475391
RTQNVLGEK	9	Unmodified	_RTQNVLGEK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7933959960938	2	522.793455	1043.57236	0.21325	0.00011148	-0.63722	-0.00033314	-0.42398	-0.00022165	522.7932277453216	15.64	0.84892	15.53	15.23	16.079	-0.10982					81	28	4	0	0	0	3.7298E-07	1	1109	1109		165.58	51.383	1	1103000			40653	4856	23595	23596	49348	49348					0.05231359703475391
RTQNVLGEK	9	Unmodified	_RTQNVLGEK_					0	0	0		ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF;ENST00000407940.1_1_6:7339375-7339741:-|nuORF	ENSG00000149273|ENST00000531188|RPS3	ENSG00000149273|ENST00000531188|RPS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7932739257812	2	522.793455	1043.57236	0.20403	0.00010666	-0.64343	-0.00033638	-0.4394	-0.00022971	522.7931938130125	15.596	0.73097	15.532	15.305	16.036	-0.064413					64	24	4	0	0	0	0.0023309	3	1110	1058;1110;1154		107.56	21.232	1	1209700			40654	4856	23595	23596	49349;49350;49351	49350					0.05231359703475391
RTQRAAPL	8	Unmodified	_RTQRAAPL_					0	0	0		ENST00000535200.1_1_12:120648776-120650425:+|nuORF	ENST00000535200.1_1_12:120648776-120650425:+|nuORF	ENST00000535200.1_1_12:120648776-120650425:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7723388671875	2	456.772326	911.530098	0.16868	7.7048E-05	-0.27619	-0.00012615	-0.10751	-4.9107E-05	456.772225395566	79.764	1.6598	79.825	79.141	80.801	0.061417					173	66	5	0	0	0	0.43043	2	20846	20795;20846		12.532	0	1	7989000			40655	11670	23596	23597	49352;49353	49353					0.07079429085729316
RTRAQWLPQVR	11	Unmodified	_RTRAQWLPQVR_					0	0	0			REV__ENST00000500893.3_1_20:279324-279489:+|nuORF	REV__ENST00000500893.3_1_20:279324-279489:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.9415283203125	3	470.940743	1409.8004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.642	1	51.652	51.152	52.152	0.0095634								0	0	0	0.36232	1	12058	12058		5.5233	1.6774	1		+		40656	21706	23597	23598	49354	49354					0.11189157351145695
RTRERLFLS	9	Unmodified	_RTRERLFLS_					0	0	0			REV__ENST00000483825.5_1_1:167487701-167487749:-|nuORF	REV__ENST00000483825.5_1_1:167487701-167487749:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3436279296875	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.67	1	119.64	119.14	120.14	-0.024361								0	0	0	0.26734	1	30886	30886		0.45834	0	1		+		40657	21525	23598	23599	49355	49355					0.09147016757128767
RTRESPLV	8	Unmodified	_RTRESPLV_					0	0	0		ENST00000433903.5_3_20:49628906-49639344:-|nuORF	ENST00000433903.5_3_20:49628906-49639344:-|nuORF	ENST00000433903.5_3_20:49628906-49639344:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2772521972656	2	479.277441	956.540328	0.25052	0.00012007	-0.092943	-4.4546E-05	0.15758	7.5525E-05	479.27726181960276	71.971	1.9573	71.971	71.233	73.191	0					154	70	3	0	0	0	0.45169	2	18286	18286;18334		5.2307	5.2307	1	959500			40658	10494	23599	23600	49356;49357	49356					0.060319920203255606
RTRESPLV	8	Unmodified	_RTRESPLV_					0	0	0		ENST00000433903.5_3_20:49628906-49639344:-|nuORF	ENST00000433903.5_3_20:49628906-49639344:-|nuORF	ENST00000433903.5_3_20:49628906-49639344:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2774963378906	2	479.277441	956.540328	0.32241	0.00015452	-0.065257	-3.1276E-05	0.25715	0.00012325	479.2772482615654	71.811	1.9108	71.867	71.319	73.23	0.056572					209	69	4	0	0	0	0.4419	2	18307	18209;18307		8.5933	8.5933	1	952830			40659	10494	23599	23600	49358;49359	49359					0.060319920203255606
RTRESPLV	8	Unmodified	_RTRESPLV_					0	0	0		ENST00000433903.5_3_20:49628906-49639344:-|nuORF	ENST00000433903.5_3_20:49628906-49639344:-|nuORF	ENST00000433903.5_3_20:49628906-49639344:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2774658203125	2	479.277441	956.540328	0.20707	9.9242E-05	0.063652	3.0507E-05	0.27072	0.00012975	479.27735198558173	73.913	2.9622	73.965	73.226	76.188	0.052361					318	106	3	0	0	0	0.4396	1	18810	18810		9.3831	9.3831	1	5051400			40660	10494	23599	23600	49360	49360					0.060319920203255606
RTRGTKAL	8	Unmodified	_RTRGTKAL_					0	0	0		ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.780029296875	2	451.780151	901.545748	0.0056031	2.5314E-06	0.16341	7.3824E-05	0.16901	7.6355E-05	451.78003585510595	76.517	0.98132	76.571	76.25	77.231	0.053413					83	34	4	0	0	0	0.4396	2	19685	19678;19685		9.3831	9.3831	1	409740			40661	5238	23600	23601	49361;49362	49362					0.09103715602793727
RTRGTKAL	8	Unmodified	_RTRGTKAL_					0	0	0		ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7799072265625	2	451.780151	901.545748	0.36316	0.00016407	-0.27103	-0.00012244	0.092131	4.1623E-05	451.77987084088056	76.555	0.92316	76.524	76.263	77.186	-0.031487					57	33	2	0	0	0	0.44734	1	19697	19697		6.7232	6.7232	1	396970			40662	5238	23600	23601	49363	49363					0.09103715602793727
RTRHRALHR	9	Unmodified	_RTRHRALHR_					0	0	0		ENSG00000168275|ENST00000366615|COA6	ENSG00000168275|ENST00000366615|COA6	ENSG00000168275|ENST00000366615|COA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8607177734375	2	601.858121	1201.70169	0.46856	0.000282	-0.62556	-0.0003765	-0.15701	-9.4497E-05	601.8574658214237	94.177	0.62511	94.177	93.908	94.534	-0.00051117					94	46	3	0	0	0	0.34536	1	25085	25085		2.0598	0	1	353080			40663	6262	23601	23602	49364	49364					0.10890598896753545
RTRLPRGKDL	10	Unmodified	_RTRLPRGKDL_					0	0	0		nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	nc|ENSG00000118564|Q9UKA1-2|FBXL5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3693237304688	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.72	1	111.74	111.24	112.24	0.0131								0	0	0	0.38199	1	29085	29085		1.3295	0.80477	1				40664	2835	23602	23603	49365	49365					0.12890394539795125
RTRLWNKHE	9	Unmodified	_RTRLWNKHE_					0	0	0			REV__nc|ENSG00000164520|Q8TD07-6|RAET1E	REV__nc|ENSG00000164520|Q8TD07-6|RAET1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3385009765625	2	620.338895	1238.66324	0.41612	0.00025814	-0.3253	-0.0002018	0.090819	5.6339E-05	620.3386689173901	20.782	1.1013	20.729	20.387	21.488	-0.052912					88	38	3	0	0	0	0.31772	1	2735	2735		5.7319	1.7875	1	556220	+		40665	23063	23603	23604	49366	49366					0.05345248471599007
RTRPPSVQV	9	Unmodified	_RTRPPSVQV_					0	0	0		ENSG00000242574|ENST00000418107|HLA-DMB	ENSG00000242574|ENST00000418107|HLA-DMB	ENSG00000242574|ENST00000418107|HLA-DMB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3040161132812	2	520.30399	1038.59343	0.25589	0.00013314	-0.4976	-0.0002589	-0.24171	-0.00012576	520.3038114159848	23.574	0.81786	23.502	23.206	24.024	-0.072559					93	28	5	0	0	0	0.12279	1	3507	3507		34.932	15.675	1	414900			40666	8550	23604	23605	49367	49367					0.0756736980297319
RTRPPSVQV	9	Unmodified	_RTRPPSVQV_					0	0	0		ENSG00000242574|ENST00000418107|HLA-DMB	ENSG00000242574|ENST00000418107|HLA-DMB	ENSG00000242574|ENST00000418107|HLA-DMB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	520.30399	1038.59343	0.2489	0.0001295	-0.33478	-0.00017419	-0.085885	-4.4686E-05	520.3038017128423	23.506	0.80015	23.506	23.197	23.998	0	-0.012878	0.00017318	NaN	34.932	74	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	421960			40667	8550	23604	23605							0.0756736980297319
RTRPPSVQV	9	Unmodified	_RTRPPSVQV_					0	0	0		ENSG00000242574|ENST00000418107|HLA-DMB	ENSG00000242574|ENST00000418107|HLA-DMB	ENSG00000242574|ENST00000418107|HLA-DMB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	520.30399	1038.59343	0.41823	0.00021761	-0.83076	-0.00043225	-0.41253	-0.00021464	520.3036329973854	23.588	0.87885	23.549	23.202	24.081	-0.038927	0.029986	-0.00034294	NaN	34.932	100	30	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419160			40668	8550	23604	23605							0.0756736980297319
RTRRTKLSPI	10	Unmodified	_RTRRTKLSPI_					0	0	0			REV__ENST00000225525.3_1_17:3567175-3568028:-|nuORF	REV__ENST00000225525.3_1_17:3567175-3568028:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.3843383789062	2	614.385845	1226.75714	0.2672	0.00016416	-1.8542	-0.0011392	-1.587	-0.00097505	614.3844264884223	90.475	0.36667	90.475	90.402	90.769	0					41	27	2	0	0	0	0.40262	1	24022	24022		2.9952	1.5133	1	338380	+		40669	19437	23605	23606	49368	49368					0.15282967573875794
RTRRTLTQN	9	Unmodified	_RTRRTLTQN_					0	0	0		nc|ENSG00000168631|Q3MIW9-2|MUCL3;nc|ENSG00000168631|Q3MIW9|MUCL3;ENSG00000168631|ENST00000462446|MUCL3	nc|ENSG00000168631|Q3MIW9-2|MUCL3	nc|ENSG00000168631|Q3MIW9-2|MUCL3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.33056640625	2	573.328528	1144.6425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.09	1	112.09	111.59	112.59	0								0	0	0	0.2646	1	29145	29145		1.6526	0.17072	1				40670	6288	23606	23607	49369	49369					0.0759665809193848
RTRRWRRSS	9	Unmodified	_RTRRWRRSS_					0	0	0			REV__nc|ENSG00000180767|Q8NET6-2|CHST13	REV__nc|ENSG00000180767|Q8NET6-2|CHST13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.8607177734375	2	630.860861	1259.70717	0.45741	0.00028856	-0.47188	-0.00029769	-0.014473	-9.1301E-06	630.8601252478331	83.901	1.4313	83.978	83.54	84.971	0.077095					105	57	3	0	0	0	0.31417	1	22008	22008		6.7232	1.8262	1	789680	+		40671	23114	23607	23608	49370	49370					0.08770277688608985
RTRRWRRSS	9	Unmodified	_RTRRWRRSS_					0	0	0			REV__nc|ENSG00000180767|Q8NET6-2|CHST13	REV__nc|ENSG00000180767|Q8NET6-2|CHST13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.8604736328125	2	630.860861	1259.70717	0.57563	0.00036315	-0.52784	-0.00033299	0.047796	3.0153E-05	630.8600334909545	84.038	1.6381	84.021	83.375	85.013	-0.016823					182	70	3	0	0	0	0.31417	3	21871	21871;22053;22103		6.7232	1.8262	1	869540	+		40672	23114	23607	23608	49371;49372;49373	49371					0.08770277688608985
RTRRWRRSS	9	Unmodified	_RTRRWRRSS_					0	0	0			REV__nc|ENSG00000180767|Q8NET6-2|CHST13	REV__nc|ENSG00000180767|Q8NET6-2|CHST13	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	630.860861	1259.70717	0.57563	0.00036315	-0.52784	-0.00033299	0.047796	3.0153E-05	630.8600334909545	84.038	1.6381	84.021	83.375	85.013	-0.016823	0.05323	-8.4793E-05	NaN	6.7232	182	70	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	869540	+		40673	23114	23607	23608							0.08770277688608985
RTRSSNGLLRG	11	Unmodified	_RTRSSNGLLRG_					0	0	0			REV__ENSG00000128011|ENST00000248668|LRFN1	REV__ENSG00000128011|ENST00000248668|LRFN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8472290039062	2	608.847084	1215.67962	0.65262	0.00039734	-0.06663	-4.0568E-05	0.58599	0.00035678	608.8470023713252	83.992	0.8848	83.992	83.279	84.163	0					112	34	4	0	0	0	0.44828	1	21927	21927		4.897	0	1	2644200	+		40674	15361	23608	23609	49374	49374					0.08040329637697141
RTRSSNGLLRG	11	Unmodified	_RTRSSNGLLRG_					0	0	0			REV__ENSG00000128011|ENST00000248668|LRFN1	REV__ENSG00000128011|ENST00000248668|LRFN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.84716796875	2	608.847084	1215.67962	0.60993	0.00037135	-0.31768	-0.00019342	0.29225	0.00017794	608.8469691643318	84.631	1.7943	84.631	84.405	86.2	0					202	67	4	0	0	0	0.44828	1	22302	22302		4.897	0.70751	1	2172800	+		40675	15361	23608	23609	49375	49375					0.08040329637697141
RTRSSNGLLRG	11	Unmodified	_RTRSSNGLLRG_					0	0	0			REV__ENSG00000128011|ENST00000248668|LRFN1	REV__ENSG00000128011|ENST00000248668|LRFN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.84716796875	2	608.847084	1215.67962	0.60642	0.00036922	-0.060974	-3.7124E-05	0.54545	0.0003321	608.8470173384787	83.949	2.9587	84.026	83.243	86.202	0.077095					317	115	4	0	0	0	0.44828	1	22096	22096		4.897	0.95262	1	2064800	+		40676	15361	23608	23609	49376	49376					0.08040329637697141
RTRSSNGLLRG	11	Unmodified	_RTRSSNGLLRG_					0	0	0			REV__ENSG00000128011|ENST00000248668|LRFN1	REV__ENSG00000128011|ENST00000248668|LRFN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8473510742188	2	608.847084	1215.67962	0.50749	0.00030899	-0.12153	-7.3996E-05	0.38596	0.00023499	608.8470185079906	84.018	2.8329	84.001	83.288	86.121	-0.016823					302	115	3	0	0	0	0.44828	2	22048	22048;22099		4.897	0.70751	1	2678900	+		40677	15361	23608	23609	49377;49378	49377					0.08040329637697141
RTRTDERAKK	10	Unmodified	_RTRTDERAKK_					0	0	0			REV__CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	REV__CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.8600463867188	2	630.860192	1259.70583	0.3725	0.000235	0.042647	2.6905E-05	0.41515	0.0002619	630.8598084653833	85.62	2.9451	85.704	84.958	87.903	0.084251					357	124	4	0	0	0	0.40262	1	22616	22616		2.9952	0	1	2278600	+		40678	13287	23609	23610	49379	49379					0.08636598809175666
RTRTDERAKK	10	Unmodified	_RTRTDERAKK_					0	0	0			REV__CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	REV__CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.8599853515625	2	630.860192	1259.70583	0.54647	0.00034475	-0.26803	-0.00016909	0.27844	0.00017566	630.8596973214932	85.777	2.7717	85.768	84.981	87.753	-0.0090027					335	114	4	0	0	0	0.40262	1	22475	22475		2.9952	0	1	2131100	+		40679	13287	23609	23610	49380	49380					0.08636598809175666
RTSEIYVHR	9	Unmodified	_RTSEIYVHR_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8121337890625	2	580.812179	1159.60981	0.24985	0.00014511	-0.22173	-0.00012878	0.028115	1.633E-05	580.8119314256722	17.036	0.61278	17.036	16.839	17.452	0					50	21	4	0	0	0	0.069258	1	1516	1516		45.74	27.594	1	258930			40680	1364	23610	23611	49381	49381					0.03638450969060614
RTSEIYVHR	9	Unmodified	_RTSEIYVHR_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8121337890625	2	580.812179	1159.60981	0.37049	0.00021518	-0.28547	-0.0001658	0.085015	4.9378E-05	580.8119019736325	17.141	0.64287	17.081	16.859	17.502	-0.060429					49	22	4	0	0	0	0.32371	1	1581	1581		5.2969	0.96765	1	210980			40681	1364	23610	23611	49382	49382					0.03638450969060614
RTSGFPAKK	9	Unmodified	_RTSGFPAKK_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.28778076171875	2	496.287808	990.561064	0.059777	2.9667E-05	0.096846	4.8064E-05	0.15662	7.773E-05	496.28779917113144	12.971	0.27497	12.971	12.815	13.09	0					17	9	2	0	0	0	0.26807	1	281	281		13.615	5.4593	1	168660			40682	2497	23611	23612	49383	49383					0.06540582399975392
RTSGFPAKK	9	Unmodified	_RTSGFPAKK_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.28802490234375	2	496.287808	990.561064	-0.056751	-2.8165E-05	0.38977	0.00019344	0.33302	0.00016527	496.2879914940161	13.02	0.31081	12.953	12.763	13.073	-0.067496					18	10	2	0	0	0	0.26278	1	297	297		14.405	5.0223	1	159040			40683	2497	23611	23612	49384	49384					0.06540582399975392
RTSGSVYITLK	11	Unmodified	_RTSGSVYITLK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.85107421875	2	612.85097	1223.68739	0.4414	0.00027051	-0.38152	-0.00023382	0.059878	3.6696E-05	612.8506457127246	33.609	0.76431	33.609	33.31	34.074	0					82	27	4	0	0	0	0.001595	2	6564	6518;6564		88.576	51.293	1	1590400			40684	4292	23612	23613	49385;49386	49386					0.08449044114604476
RTSGSVYITLK	11	Unmodified	_RTSGSVYITLK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.850341796875	2	612.85097	1223.68739	0.56058	0.00034355	-0.312	-0.00019121	0.24858	0.00015234	612.8507094778693	33.48	0.88379	33.546	33.266	34.149	0.06636					84	31	4	0	0	0	0.004696	3	6472	6472;6522;6592		80.896	52.401	1	1709600			40685	4292	23612	23613	49387;49388;49389	49387					0.08449044114604476
RTSGSVYITLK	11	Unmodified	_RTSGSVYITLK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.8507080078125	2	612.85097	1223.68739	0.081717	5.008E-05	0.12281	7.5261E-05	0.20452	0.00012534	612.8509912391897	33.456	0.85637	33.523	33.271	34.127	0.066704					82	30	4	0	0	0	0.005006	2	6468	6468;6519		80.24	47.454	1	1503400			40686	4292	23612	23613	49390;49391	49390					0.08449044114604476
RTSMEKWF	8	Unmodified	_RTSMEKWF_					0	0	0		GDAP2|p.D21Ifs*39|1|0.09|ENSG00000196505|chr1:117920276-117920297|TTAATTCATCTTGGCATGAGTC/-|frameshift_variant	GDAP2|p.D21Ifs*39|1|0.09|ENSG00000196505|chr1:117920276-117920297|TTAATTCATCTTGGCATGAGTC/-|frameshift_variant	GDAP2|p.D21Ifs*39|1|0.09|ENSG00000196505|chr1:117920276-117920297|TTAATTCATCTTGGCATGAGTC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8079223632812	2	542.765852	1083.51715	0.87781	0.00047644	0.28241	0.00015328	1.1602	0.00062973	542.7661433714142	78.284	0.55276	78.284	78.062	78.615	0					44	20	4	0	0	0	0.34272	1	20244	20244		4.3292	0.73274	1	273250			40687	12348	23613	23614	49392	49392					-0.021267700886483
RTSTSTLLH	9	Unmodified	_RTSTSTLLH_					0	0	0		ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;ENST00000489076.1_1_1:154227743-154229994:+|nuORF	ENSG00000143569|ENST00000428931|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2803649902344	2	508.28018	1014.54581	0.12395	6.3E-05	0.13624	6.9246E-05	0.26018	0.00013225	508.28021545301505	19.311	0.73013	19.311	19.066	19.796	0					60	25	4	0	0	0	0.23007	1	2192	2192		19.257	19.257	1	272820			40688	4531	23614	23615	49393	49393					0.03911670812135526
RTSTSTLLH	9	Unmodified	_RTSTSTLLH_					0	0	0		ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;ENST00000489076.1_1_1:154227743-154229994:+|nuORF	ENSG00000143569|ENST00000428931|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.28021240234375	2	508.28018	1014.54581	0.21415	0.00010885	-0.12967	-6.5907E-05	0.084484	4.2942E-05	508.2801016425764	19.49	0.75308	19.375	19.116	19.869	-0.11592					64	25	4	0	0	0	0.26612	1	2277	2277		13.906	13.906	1	279140			40689	4531	23614	23615	49394	49394					0.03911670812135526
RTSTSTLLH	9	Unmodified	_RTSTSTLLH_					0	0	0		ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;ENST00000489076.1_1_1:154227743-154229994:+|nuORF	ENSG00000143569|ENST00000428931|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.28021240234375	2	508.28018	1014.54581	0.24442	0.00012424	0.092193	4.686E-05	0.33662	0.0001711	508.2801444087329	19.436	0.81563	19.38	19.114	19.93	-0.055693					56	28	3	0	0	0	0.14076	1	2210	2210		32.305	32.305	1	301610			40690	4531	23614	23615	49395	49395					0.03911670812135526
RTTDIVIRI	9	Unmodified	_RTTDIVIRI_					0	0	0		ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	ENSG00000175931|ENST00000319380|UBE2O	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7828979492188	2	543.835123	1085.65569	0.75533	0.00041078	-0.3245	-0.00017647	0.43083	0.0002343	543.8347980180835	44.551	0.51442	44.619	44.437	44.952	0.068573					38	18	3	0	0	0	0.22695	1	9894	9894		24.882	6.5085	1	452170			40691	6892	23615	23616	49396	49396					0.11629096151295926
RTVDRKLKL	9	Unmodified	_RTVDRKLKL_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.3038330078125	2	564.864215	1127.71388	0.1342	7.5807E-05	-0.36243	-0.00020472	-0.22822	-0.00012892	564.8639395277224	18.317	0.32027	18.317	18.158	18.479	0					17	10	2	0	0	0	0.26068	1	1900	1900		3.2813	0	1	33357			40692	5701	23616	23617	49397	49397					0.15512777796584487
RTVESGLEV	9	Unmodified	_RTVESGLEV_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.26678466796875	2	495.266739	988.518924	-0.33493	-0.00016588	1.222	0.00060522	0.88708	0.00043934	495.267539253437	35.358	0.73687	35.358	34.868	35.604	0					67	26	3	0	0	0	0.19905	1	6990	6990		23.79	5.6434	1	484970			40693	6644	23617	23618	49398	49398					0.024205622009503713
RTVPVGGVVK	10	Unmodified	_RTVPVGGVVK_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.31890869140625	2	506.319109	1010.62366	0.18434	9.3333E-05	-0.88529	-0.00044824	-0.70095	-0.00035491	506.31852324551744	24.392	0.5108	24.353	24.135	24.646	-0.038927					46	17	4	0	0	0	0.30656	1	3740	3740		19.626	0.26401	1	387570			40694	8657	23618	23619	49399	49399					0.11877728468186888
RTVPVRPL	8	Unmodified	_RTVPVRPL_					0	0	0			REV__ENST00000481734.1_1_3:39174545-39175936:+|nuORF	REV__ENST00000481734.1_1_3:39174545-39175936:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.5648498535156	2	469.300719	936.586885	0.20713	9.7205E-05	-0.31419	-0.00014745	-0.10707	-5.0246E-05	469.3006225425698	29.695	0.4783	29.695	29.521	29.999	0					19	16	2	0	0	0	0.34247	1	5394	5394		8.5933	1.304	1	100730	+		40695	21493	23619	23620	49400	49400					0.11605476642262147
RTVSPPSTQRA	11	Unmodified	_RTVSPPSTQRA_					0	0	0			REV__ENST00000426740.6_3_1:161518222-161518297:-|nuORF	REV__ENST00000426740.6_3_1:161518222-161518297:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3287963867188	2	600.328193	1198.64183	-0.050293	-3.0193E-05	1.0741	0.00064481	1.0238	0.00061461	600.3287786439705	12.827	0.2642	12.76	12.64	12.905	-0.067495					22	8	4	0	0	0	0.46969	1	252	252		2.086	0.24177	1	101900	+		40696	20906	23620	23621	49401	49401					0.050458186522291726
RTVYVYLEK	9	Unmodified	_RTVYVYLEK_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8082275390625	2	585.829506	1169.64446	-0.86055	-0.00050414	0.54598	0.00031985	-0.31457	-0.00018429	585.8299238805688	35.043	0.52664	35.043	34.775	35.302	0					30	18	3	0	0	0	0.25049	1	6953	6953		13.615	4.2317	1	156940			40697	1732	23621	23622	49402	49402					0.06642274057185205
RTWSPSPLR	9	Unmodified	_RTWSPSPLR_					0	0	0			REV__ENST00000568542.5_1_16:2255373-2256424:+|nuORF	REV__ENST00000568542.5_1_16:2255373-2256424:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3056030273438	2	550.30399	1098.59343	0.40315	0.00022185	4.3355	0.0023858	4.7386	0.0026077	550.3056641773541	19.527	0.59841	19.471	19.08	19.678	-0.055693					45	20	3	0	0	0	0.33719	1	2248	2248		3.2813	0	1	149480	+		40698	22395	23622	23623	49403	49403					0.04807369802983885
RTWVTLKA	8	Unmodified	_RTWVTLKA_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.79083251953125	2	487.792727	973.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.685	1	75.653	75.153	76.153	-0.031487								0	0	0	0.36748	1	19443	19443		6.7232	0.99131	1				40699	7881	23623	23624	49404	49404					0.08305770405377189
RTYDGDGYKK	10	Unmodified	_RTYDGDGYKK_					0	0	0		ENSG00000272325|ENST00000607016|NUDT3	ENSG00000272325|ENST00000607016|NUDT3	ENSG00000272325|ENST00000607016|NUDT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.254150390625	2	601.793652	1201.57275	0.14654	8.8185E-05	-0.52799	-0.00031774	-0.38145	-0.00022956	601.793200269549	13.381	0.45988	13.381	13.254	13.714	0					23	15	3	0	0	0	0.31911	1	404	404		6.6304	4.3276	1	110860			40700	8699	23624	23625	49405	49405					-0.019972653673448804
RTYDGDGYKK	10	Unmodified	_RTYDGDGYKK_					0	0	0		ENSG00000272325|ENST00000607016|NUDT3	ENSG00000272325|ENST00000607016|NUDT3	ENSG00000272325|ENST00000607016|NUDT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.254150390625	2	601.793652	1201.57275	-0.019165	-1.1533E-05	-0.29561	-0.0001779	-0.31477	-0.00018943	601.79348707899	13.516	0.29836	13.449	13.275	13.574	-0.067496					25	10	3	0	0	0	0.3179	1	431	431		8.9762	4.2202	1	89550			40701	8699	23624	23625	49406	49406					-0.019972653673448804
RTYDGDGYKK	10	Unmodified	_RTYDGDGYKK_					0	0	0		ENSG00000272325|ENST00000607016|NUDT3	ENSG00000272325|ENST00000607016|NUDT3	ENSG00000272325|ENST00000607016|NUDT3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	601.793652	1201.57275	0.14843	8.9324E-05	-0.29692	-0.00017868	-0.14849	-8.9358E-05	601.7933580892908	13.485	0.38776	13.386	13.276	13.663	-0.099291	-0.019324	4.7931E-05	NaN	8.9762	31	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111220			40702	8699	23624	23625							-0.019972653673448804
RTYDREGFKK	10	Unmodified	_RTYDREGFKK_					0	0	0		ENSG00000173598|ENST00000415493|NUDT4;ENSG00000177144|ENST00000322209|NUDT4B	ENSG00000173598|ENST00000415493|NUDT4	ENSG00000173598|ENST00000415493|NUDT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.8979187011719	3	433.898321	1298.67313	-0.40933	-0.00017761	-1.342	-0.00058227	-1.7513	-0.00075988	433.89773534919	14.35	0.50806	14.35	14.221	14.729	0					50	17	4	0	0	0	0.34896	2	719	673;719		12.856	5.8189	1	881620			40703	6734	23625	23626	49407;49408	49408					0.035743916863111735
RTYDREGFKK	10	Unmodified	_RTYDREGFKK_					0	0	0		ENSG00000173598|ENST00000415493|NUDT4;ENSG00000177144|ENST00000322209|NUDT4B	ENSG00000173598|ENST00000415493|NUDT4	ENSG00000173598|ENST00000415493|NUDT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.88568115234375	3	433.898321	1298.67313	-0.3076	-0.00013347	-0.77086	-0.00033447	-1.0785	-0.00046794	433.8980157241627	14.577	0.52149	14.472	14.273	14.795	-0.10466					62	17	5	0	0	0	0.20968	2	760	760;772		31.462	21.147	1	748430			40704	6734	23625	23626	49409;49410	49409					0.035743916863111735
RTYDREGFKK	10	Unmodified	_RTYDREGFKK_					0	0	0		ENSG00000173598|ENST00000415493|NUDT4;ENSG00000177144|ENST00000322209|NUDT4B	ENSG00000173598|ENST00000415493|NUDT4	ENSG00000173598|ENST00000415493|NUDT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.8978576660156	3	433.898321	1298.67313	-0.40127	-0.00017411	-0.88311	-0.00038318	-1.2844	-0.00055729	433.897960473632	14.536	0.58042	14.47	14.289	14.869	-0.066068					65	20	4	0	0	0	0.31709	1	755	755		18.34	5.4838	1	842700			40705	6734	23625	23626	49411	49411					0.035743916863111735
RTYSLGSAL	9	Unmodified	_RTYSLGSAL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.64697265625	2	484.263999	966.513445	0.31638	0.00015321	0.27665	0.00013397	0.59304	0.00028719	484.2642004074873	43.061	0.46531	43.147	42.861	43.327	0.085197					28	16	2	0	0	0	0.24787	1	9425	9425		7.1017	2.2047	1	308550			40706	537	23626	23627	49412	49412					0.028848834091604658
RTYSLGSAL	9	Unmodified	_RTYSLGSAL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.6470642089844	2	484.263999	966.513445	0.10809	5.2346E-05	0.14582	7.0615E-05	0.25391	0.00012296	484.2640343498656	42.974	0.59076	43.066	42.8	43.391	0.091362					32	21	2	0	0	0	0.25689	1	9394	9394		4.5289	0.65253	1	321380			40707	537	23626	23627	49413	49413					0.028848834091604658
RTYYSPVYR	9	Unmodified	_RTYYSPVYR_					0	0	0		ENSG00000144283|ENST00000389759|PKP4;nc|ENSG00000144283|Q99569-2|PKP4	ENSG00000144283|ENST00000389759|PKP4	ENSG00000144283|ENST00000389759|PKP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.8087158203125	2	602.809105	1203.60366	0.57902	0.00034904	-0.935	-0.00056363	-0.35598	-0.00021459	602.8084313361538	30.17	0.52729	30.17	29.945	30.473	0					44	18	3	0	0	0	0.081077	1	5479	5479		51.415	36.577	1	445060			40708	4572	23627	23628	49414	49414					0.009999327375680878
RTYYSPVYR	9	Unmodified	_RTYYSPVYR_					0	0	0		ENSG00000144283|ENST00000389759|PKP4;nc|ENSG00000144283|Q99569-2|PKP4	ENSG00000144283|ENST00000389759|PKP4	ENSG00000144283|ENST00000389759|PKP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8084106445312	2	602.809105	1203.60366	0.5782	0.00034854	-0.83552	-0.00050366	-0.25733	-0.00015512	602.8083902692568	30.155	0.70831	30.183	29.901	30.61	0.027946					52	24	3	0	0	0	0.04846	1	5471	5471		65.474	29.347	1	422760			40709	4572	23627	23628	49415	49415					0.009999327375680878
RTYYSPVYR	9	Unmodified	_RTYYSPVYR_					0	0	0		ENSG00000144283|ENST00000389759|PKP4;nc|ENSG00000144283|Q99569-2|PKP4	ENSG00000144283|ENST00000389759|PKP4	ENSG00000144283|ENST00000389759|PKP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8088989257812	2	602.809105	1203.60366	0.049892	3.0075E-05	-0.27492	-0.00016572	-0.22502	-0.00013565	602.8086779597731	30.146	0.59828	30.173	29.956	30.555	0.027157					47	20	3	0	0	0	0.016948	1	5474	5474		83.429	43.471	1	550350			40710	4572	23627	23628	49416	49416					0.009999327375680878
RVAADTVK	8	Unmodified	_RVAADTVK_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8883361816406	2	430.253434	858.492316	-0.26229	-0.00011285	0.41627	0.0001791	0.15398	6.625E-05	430.2536280412412	22.508	0.66499	22.463	22.182	22.847	-0.044867					51	22	3	0	0	0	0.34294	1	3236	3236		3.9444	0	1	365270			40711	7415	23628	23629	49417	49417					0.057409181002867626
RVAAILQGVYK	11	Unmodified	_RVAAILQGVYK_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.3720092773438	2	609.371872	1216.72919	0.12272	7.4784E-05	0.039627	2.4147E-05	0.16235	9.8932E-05	609.3718375497921	42.558	1.0012	42.558	42.306	43.307	0					93	36	4	0	0	0	1.3139E-05	2	9257	9257;9308		121.35	89.308	1	2505400			40712	2358	23629	23630	49418;49419	49418					0.12949644593800258
RVAAILQGVYK	11	Unmodified	_RVAAILQGVYK_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.58367919921875	3	406.583674	1216.72919	-0.33062	-0.00013443	0.36733	0.00014935	0.036705	1.4924E-05	406.583777727614	42.561	1.0024	42.561	42.33	43.333	0					90	36	4	0	0	0	0.0047998	1	9261	9261		66.55	49.711	1	1942000			40713	2358	23629	23630	49420	49420					0.12949644593800258
RVAAILQGVYK	11	Unmodified	_RVAAILQGVYK_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.3718872070312	2	609.371872	1216.72919	0.35074	0.00021373	-0.2137	-0.00013023	0.13704	8.3508E-05	609.371731757678	42.316	1.0097	42.401	42.153	43.163	0.085197					91	36	4	0	0	0	4.1027E-09	3	9223	9178;9223;9275		151.48	105.74	1	2791400			40714	2358	23629	23630	49421;49422;49423	49422					0.12949644593800258
RVAAILQGVYK	11	Unmodified	_RVAAILQGVYK_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2178955078125	3	406.583674	1216.72919	-0.086158	-3.503E-05	0.10337	4.2027E-05	0.01721	6.9972E-06	406.583682665609	42.32	0.98997	42.406	42.093	43.083	0.085197					98	35	4	0	0	0	0.32625	1	9348	9348		16.275	14.368	1	2236100			40715	2358	23629	23630	49424	49424					0.12949644593800258
RVAAILQGVYK	11	Unmodified	_RVAAILQGVYK_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.371826171875	2	609.371872	1216.72919	0.31672	0.000193	-0.12898	-7.8596E-05	0.18774	0.0001144	609.3717722400721	42.286	0.99996	42.377	42.095	43.095	0.091362					90	35	4	0	0	0	1.3139E-05	3	9140	9140;9191;9244		121.35	89.308	1	2315300			40716	2358	23629	23630	49425;49426;49427	49425					0.12949644593800258
RVAAILQGVYK	11	Unmodified	_RVAAILQGVYK_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.21795654296875	3	406.583674	1216.72919	0.00051678	2.1011E-07	0.091063	3.7025E-05	0.09158	3.7235E-05	406.58368672160145	42.283	0.89012	42.374	42.095	42.985	0.091362					90	31	4	0	0	0	0.33025	1	9341	9341		3.8459	0	1	1768700			40717	2358	23629	23630	49428	49428					0.12949644593800258
RVAALDWSRL	10	Unmodified	_RVAALDWSRL_					0	0	0		ENST00000370018.7_1_20:62289668-62289773:+|nuORF	ENST00000370018.7_1_20:62289668-62289773:+|nuORF	ENST00000370018.7_1_20:62289668-62289773:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8204345703125	2	593.838197	1185.66184	0.32659	0.00019394	0.088122	5.233E-05	0.41472	0.00024627	593.838289662303	31.194	0.75999	31.235	30.747	31.507	0.040991					60	27	4	0	0	0	0.34795	1	5789	5789		13.042	1.5478	1	514920			40718	9789	23630	23631	49429	49429					0.07643614382823216
RVADRLYGVYK	11	Unmodified	_RVADRLYGVYK_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.2539367675781	3	447.254216	1338.74082	0.44076	0.00019713	-1.0993	-0.00049167	-0.65856	-0.00029454	447.2538375191332	32.12	1.1105	32.163	31.823	32.934	0.042366					138	39	5	0	0	0	0.2537	1	6084	6084		44.207	29.25	1	3432900			40719	2572	23631	23632	49430	49430					0.08499841617117454
RVADRLYGVYK	11	Unmodified	_RVADRLYGVYK_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.2539978027344	3	447.254216	1338.74082	0.29011	0.00012975	-0.96253	-0.00043049	-0.67242	-0.00030074	447.25390196190085	32.159	1.3598	32.2	31.802	33.162	0.040993					144	48	4	0	0	0	0.21543	1	6136	6136		56.328	35.457	1	2701000			40720	2572	23631	23632	49431	49431					0.08499841617117454
RVALRCRPLVP	11	Unmodified	_RVALRCRPLVP_					0	0	0		nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A;KIF4B|p.N790Sfs*35|1|0.07|ENSG00000226650|chr5:155016227-155016228|-/GC|frameshift_variant;ENSG00000226650|ENST00000435029|KIF4B	nc|ENSG00000090889|O95239-2|KIF4A	nc|ENSG00000090889|O95239-2|KIF4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.392822265625	2	640.392616	1278.77068	0.63072	0.00040391	0.85826	0.00054962	1.489	0.00095354	640.3929961170087	47.864	1.1721	47.864	47.493	48.665	0					115	41	4	0	0	0	0.46704	2	10996	10849;10996		5.2969	4.1035	1	6465000			40721	1391	23632	23633	49432;49433	49433					0.14244502081464816
RVALRCRPLVP	11	Unmodified	_RVALRCRPLVP_					0	0	0		nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A;KIF4B|p.N790Sfs*35|1|0.07|ENSG00000226650|chr5:155016227-155016228|-/GC|frameshift_variant;ENSG00000226650|ENST00000435029|KIF4B	nc|ENSG00000090889|O95239-2|KIF4A	nc|ENSG00000090889|O95239-2|KIF4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.393310546875	2	640.392616	1278.77068	0.86829	0.00055605	0.4588	0.00029381	1.3271	0.00084986	640.3927461441656	47.803	1.2364	47.851	47.482	48.718	0.047523					129	45	4	0	0	0	0.47713	1	10837	10837		2.7352	2.7352	1	5873700			40722	1391	23632	23633	49434	49434					0.14244502081464816
RVALRCRPLVP	11	Unmodified	_RVALRCRPLVP_					0	0	0		nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A;KIF4B|p.N790Sfs*35|1|0.07|ENSG00000226650|chr5:155016227-155016228|-/GC|frameshift_variant;ENSG00000226650|ENST00000435029|KIF4B	nc|ENSG00000090889|O95239-2|KIF4A	nc|ENSG00000090889|O95239-2|KIF4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.2643737792969	3	427.26417	1278.77068	0.28837	0.00012321	0.44349	0.00018949	0.73186	0.0003127	427.2643258586268	47.837	3.6874	47.885	47.456	51.143	0.047523					369	136	5	0	0	0	0.45202	4	10894	10894;11095;11147;11357		4.4062	4.4062	1	58472000			40723	1391	23632	23633	49435;49436;49437;49438	49435					0.14244502081464816
RVALRCRPLVP	11	Unmodified	_RVALRCRPLVP_					0	0	0		nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A;KIF4B|p.N790Sfs*35|1|0.07|ENSG00000226650|chr5:155016227-155016228|-/GC|frameshift_variant;ENSG00000226650|ENST00000435029|KIF4B	nc|ENSG00000090889|O95239-2|KIF4A	nc|ENSG00000090889|O95239-2|KIF4A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	427.26417	1278.77068	0.18687	7.9841E-05	0.60704	0.00025937	0.79391	0.00033921	427.26440330238233	47.835	3.5166	47.835	47.38	50.896	0	-0.011772	8.3598E-05	NaN	4.4062	364	127	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65009000			40724	1391	23632	23633							0.14244502081464816
RVALRCRPLVP	11	Unmodified	_RVALRCRPLVP_					0	0	0		nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A;KIF4B|p.N790Sfs*35|1|0.07|ENSG00000226650|chr5:155016227-155016228|-/GC|frameshift_variant;ENSG00000226650|ENST00000435029|KIF4B	nc|ENSG00000090889|O95239-2|KIF4A	nc|ENSG00000090889|O95239-2|KIF4A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	427.26417	1278.77068	0.1721	7.3534E-05	0.52633	0.00022488	0.69844	0.00029842	427.26435407561354	47.778	3.9244	47.821	47.43	51.355	0.04332	-0.02589	-1.9856E-05	NaN	4.4062	411	146	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52172000			40725	1391	23632	23633							0.14244502081464816
RVAPAHGLFLK	11	Unmodified	_RVAPAHGLFLK_					0	0	0		ENSG00000169972|ENST00000379031|PUSL1;ENST00000493657.1_1_1:1246183-1246756:+|nuORF;nc|ENSG00000169972|Q8N0Z8-2|PUSL1	ENSG00000169972|ENST00000379031|PUSL1	ENSG00000169972|ENST00000379031|PUSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.580322265625	3	403.580264	1207.71896	-0.21617	-8.7243E-05	0.35162	0.00014191	0.13545	5.4663E-05	403.5803994946174	31.641	0.73048	31.641	31.333	32.064	0					63	25	3	0	0	0	0.053629	3	5900	5900;5962;5992		52.193	33.632	1	1453200			40726	6408	23633	23634	49439;49440;49441	49439					0.12341081659201336
RVAPAHGLFLK	11	Unmodified	_RVAPAHGLFLK_					0	0	0		ENSG00000169972|ENST00000379031|PUSL1;ENST00000493657.1_1_1:1246183-1246756:+|nuORF;nc|ENSG00000169972|Q8N0Z8-2|PUSL1	ENSG00000169972|ENST00000379031|PUSL1	ENSG00000169972|ENST00000379031|PUSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.580322265625	3	403.580264	1207.71896	-0.28489	-0.00011497	0.352	0.00014206	0.067116	2.7087E-05	403.5804165963642	31.538	0.58754	31.581	31.322	31.909	0.042364					63	20	4	0	0	0	0.035355	3	5878	5878;5926;5971		57.477	39.104	1	1695200			40727	6408	23633	23634	49442;49443;49444	49442					0.12341081659201336
RVAPAHGLFLK	11	Unmodified	_RVAPAHGLFLK_					0	0	0		ENSG00000169972|ENST00000379031|PUSL1;ENST00000493657.1_1_1:1246183-1246756:+|nuORF;nc|ENSG00000169972|Q8N0Z8-2|PUSL1	ENSG00000169972|ENST00000379031|PUSL1	ENSG00000169972|ENST00000379031|PUSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.5803527832031	3	403.580264	1207.71896	-0.12019	-4.8505E-05	0.24657	9.9509E-05	0.12638	5.1004E-05	403.580335886477	31.584	1.4463	31.625	31.306	32.752	0.040991					127	51	4	0	0	0	0.094126	1	5871	5871		40.714	29.915	1	1604000			40728	6408	23633	23634	49445	49445					0.12341081659201336
RVAPEEHPVL	10	Unmodified	_RVAPEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8167114257812	2	573.81693	1145.61931	0.40873	0.00023454	-0.73081	-0.00041935	-0.32208	-0.00018482	573.8165713703823	29.991	0.42858	30.003	29.774	30.202	0.012264					28	14	3	0	0	0	0.28174	1	5438	5438		22.658	8.2527	1	222120			40729	1050	23634	23635	49446	49446					0.052322192545943835
RVAPEEHPVL	10	Unmodified	_RVAPEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	573.81693	1145.61931	0.35113	0.00020148	-0.6573	-0.00037717	-0.30618	-0.00017569	573.8166827594858	29.976	0.50806	29.976	29.774	30.282	0	-0.013435	6.7906E-05	NaN	22.658	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167790			40730	1050	23634	23635							0.052322192545943835
RVAPPRALL	9	Unmodified	_RVAPPRALL_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5;nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENST00000493523.2_1_2:73302651-73316730:-|nuORF	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.8218078613281	2	496.821818	991.629084	0.43959	0.0002184	-0.33469	-0.00016628	0.1049	5.2115E-05	496.8216274409036	35.58	0.44788	35.58	35.382	35.83	0					25	15	2	0	0	0	0.18803	1	7148	7148		25.399	4.9457	1	306800			40731	3888	23635	23636	49447	49447					0.13293452050652377
RVAPPRALL	9	Unmodified	_RVAPPRALL_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5;nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENST00000493523.2_1_2:73302651-73316730:-|nuORF	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.82177734375	2	496.821818	991.629084	0.38769	0.00019261	-0.1313	-6.5234E-05	0.25639	0.00012738	496.8216821224884	35.52	0.4439	35.602	35.353	35.797	0.082355					27	15	2	0	0	0	0.29176	1	7138	7138		10.074	1.4806	1	328780			40732	3888	23635	23636	49448	49448					0.13293452050652377
RVAPPRALL	9	Unmodified	_RVAPPRALL_					0	0	0		ENSG00000135631|ENST00000486777|RAB11FIP5;nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENST00000493523.2_1_2:73302651-73316730:-|nuORF	ENSG00000135631|ENST00000486777|RAB11FIP5	ENSG00000135631|ENST00000486777|RAB11FIP5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	496.821818	991.629084	-0.011447	-5.687E-06	0.5059	0.00025134	0.49446	0.00024566	496.82202083239775	35.496	0.41772	35.583	35.345	35.762	0.08625	-0.0056369	0.00068769	NaN	25.399	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374160			40733	3888	23635	23636							0.13293452050652377
RVAQQKQQQL	10	Unmodified	_RVAQQKQQQL_					0	0	0		nc|ENSG00000124356|O95630-2|STAMBP;ENSG00000124356|ENST00000394070|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	nc|ENSG00000124356|O95630-2|STAMBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5704650878906	3	409.570316	1225.68912	-0.2139	-8.7606E-05	0.3093	0.00012668	0.095407	3.9076E-05	409.5703948428025	25.713	0.6938	25.713	25.384	26.078	0					68	23	4	0	0	0	0.1715	1	4139	4139		24.882	0	1	823040			40734	3155	23636	23637	49449	49449					0.08530097923221547
RVAQRPMRL	9	Unmodified	_RVAQRPMRL_					0	0	0			REV__ENST00000234610.5_1_1:1631484-1633139:+|nuORF	REV__ENST00000234610.5_1_1:1631484-1633139:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.834716796875	2	563.834934	1125.65532	-0.059101	-3.3323E-05	0.029679	1.6734E-05	-0.029422	-1.6589E-05	563.8349202861649	13.457	0.73526	13.457	13.227	13.962	0					74	25	4	0	0	0	0.28128	1	411	411		11.64	0	1	380950	+		40735	19480	23637	23638	49450	49450					0.09751397950481078
RVAQRPMRL	9	Unmodified	_RVAQRPMRL_					0	0	0			REV__ENST00000234610.5_1_1:1631484-1633139:+|nuORF	REV__ENST00000234610.5_1_1:1631484-1633139:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.834934	1125.65532	-0.059101	-3.3323E-05	0.029679	1.6734E-05	-0.029422	-1.6589E-05	563.8349202861649	13.457	0.73526	13.457	13.227	13.962	0	0.017718	-4.6773E-05	NaN	11.64	74	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380950	+		40736	19480	23637	23638							0.09751397950481078
RVDFERKGSK	10	Unmodified	_RVDFERKGSK_					0	0	0			REV__ENST00000524549.1_1_11:9597437-9598815:+|nuORF	REV__ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.3560180664062	2	611.338561	1220.66257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.69	1	82.69	82.19	83.19	0								0	0	0	0.35285	1	21599	21599		13.615	5.4593	1		+		40737	17325	23638	23639	49451	49451					0.06106409031895055
RVDFERKGSK	10	Unmodified	_RVDFERKGSK_					0	0	0			REV__ENST00000524549.1_1_11:9597437-9598815:+|nuORF	REV__ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.3563842773438	2	611.338561	1220.66257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.634	1	82.707	82.207	83.207	0.073097								0	0	0	0.37355	1	21571	21571		4.897	0	1		+		40738	17325	23638	23639	49452	49452					0.06106409031895055
RVFAAESIIK	10	Unmodified	_RVFAAESIIK_					0	0	0		ENSG00000183741|ENST00000407418|CBX6;ENST00000469420.1_1_22:39267340-39268216:-|nuORF	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3641357421875	2	567.337498	1132.66044	0.46026	0.00026112	-0.37111	-0.00021054	0.089149	5.0578E-05	567.3372694924135	40.551	0.56874	40.551	40.334	40.902	0					43	20	3	0	0	0	0.309	1	8609	8609		20.581	4.4318	1	512340			40739	7397	23639	23640	49453	49453					0.09941980294070163
RVFAAESIIK	10	Unmodified	_RVFAAESIIK_					0	0	0		ENSG00000183741|ENST00000407418|CBX6;ENST00000469420.1_1_22:39267340-39268216:-|nuORF	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.33740234375	2	567.337498	1132.66044	0.57273	0.00032493	-0.38461	-0.0002182	0.18812	0.00010673	567.3371923751495	40.331	0.80474	40.423	40.176	40.98	0.09267					53	29	3	0	0	0	0.20497	1	8634	8634		32.037	4.4087	1	567380			40740	7397	23639	23640	49454	49454					0.09941980294070163
RVFAAESIIK	10	Unmodified	_RVFAAESIIK_					0	0	0		ENSG00000183741|ENST00000407418|CBX6;ENST00000469420.1_1_22:39267340-39268216:-|nuORF	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3640747070312	2	567.337498	1132.66044	0.41819	0.00023726	-0.31709	-0.0001799	0.1011	5.7359E-05	567.3372494790914	40.313	0.44025	40.413	40.201	40.641	0.099407					37	15	3	0	0	0	0.28683	1	8550	8550		28.234	9.8605	1	557420			40741	7397	23639	23640	49455	49455					0.09941980294070163
RVFAAESIIKR	11	Unmodified	_RVFAAESIIKR_					0	0	0		ENSG00000183741|ENST00000407418|CBX6;ENST00000469420.1_1_22:39267340-39268216:-|nuORF	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.5943298339844	3	430.594461	1288.76155	-0.79138	-0.00034076	0.015287	6.5825E-06	-0.77609	-0.00033418	430.5945200596261	35.211	1.3125	35.211	34.917	36.229	0					135	47	5	0	0	0	0.00086112	3	7029	6984;7029;7076		98.811	73.656	1	6058400			40742	7397	23640	23641	49456;49457;49458	49457					0.12872431996765954
RVFAAESIIKR	11	Unmodified	_RVFAAESIIKR_					0	0	0		ENSG00000183741|ENST00000407418|CBX6;ENST00000469420.1_1_22:39267340-39268216:-|nuORF	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.5943298339844	3	430.594461	1288.76155	-0.79545	-0.00034252	0.075675	3.2585E-05	-0.71977	-0.00030993	430.5945561296714	35.124	1.3208	35.199	34.874	36.195	0.075306					139	47	5	0	0	0	0.0010092	3	7008	6961;7008;7051		96.746	72.517	1	6886500			40743	7397	23640	23641	49459;49460;49461	49460					0.12872431996765954
RVFAAESIIKR	11	Unmodified	_RVFAAESIIKR_					0	0	0		ENSG00000183741|ENST00000407418|CBX6;ENST00000469420.1_1_22:39267340-39268216:-|nuORF	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	645.387451171875	2	645.388054	1288.76155	-0.42079	-0.00027157	0.19146	0.00012357	-0.22933	-0.00014801	645.3880290517719	35.091	0.46313	35.166	34.99	35.454	0.075306					31	16	3	0	0	0	0.33938	1	7022	7022		27.129	16.329	1	225060			40744	7397	23640	23641	49462	49462					0.12872431996765954
RVFAAESIIKR	11	Unmodified	_RVFAAESIIKR_					0	0	0		ENSG00000183741|ENST00000407418|CBX6;ENST00000469420.1_1_22:39267340-39268216:-|nuORF	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.5943298339844	3	430.594461	1288.76155	-0.95183	-0.00040985	0.27224	0.00011723	-0.67959	-0.00029263	430.5946353455477	35.112	1.1833	35.189	34.866	36.05	0.077377					128	42	5	0	0	0	2.1996E-05	3	6988	6943;6988;7030		113.01	82.578	1	6366600			40745	7397	23640	23641	49463;49464;49465	49464					0.12872431996765954
RVFAAESIIKR	11	Unmodified	_RVFAAESIIKR_					0	0	0		ENSG00000183741|ENST00000407418|CBX6;ENST00000469420.1_1_22:39267340-39268216:-|nuORF	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	645.3875732421875	2	645.388054	1288.76155	-0.56595	-0.00036526	0.23623	0.00015246	-0.32972	-0.0002128	645.3881487086504	35.086	0.38836	35.163	34.975	35.363	0.077377					30	13	3	0	0	0	0.39023	1	7003	7003		19.144	11.855	1	366080			40746	7397	23640	23641	49466	49466					0.12872431996765954
RVFARSLKYK	10	Unmodified	_RVFARSLKYK_					0	0	0			REV__ENSG00000013375|ENST00000513973|PGM3	REV__ENSG00000013375|ENST00000513973|PGM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.2701416015625	3	423.259302	1266.75608	0.0056344	2.3848E-06	-0.16323	-6.9087E-05	-0.15759	-6.6702E-05	423.25918994532924	21.775	1.2995	21.675	20.933	22.233	-0.10034					84	46	3	0	0	0	0.3994	1	3029	3029		3.5871	0	1	252940	+		40747	13444	23641	23642	49467	49467					0.13336753204976048
RVFHQNVF	8	Unmodified	_RVFHQNVF_					0	0	0		nc|ENSG00000173867|Q7L5Y6-2|DET1;ENSG00000140543|ENST00000268148|DET1	nc|ENSG00000173867|Q7L5Y6-2|DET1	nc|ENSG00000173867|Q7L5Y6-2|DET1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.7686157226562	2	523.780151	1045.54575	0.28144	0.00014741	-1.311	-0.00068667	-1.0295	-0.00053925	523.7787587274286	23.304	0.38936	23.217	23.018	23.407	-0.08761					26	13	3	0	0	0	0.4419	1	3428	3428		8.5933	0.43775	1	80649			40748	4316	23642	23643	49468	49468					0.024797156027943856
RVFKEENQK	9	Unmodified	_RVFKEENQK_					0	0	0		ENST00000534269.5_1_6:136590404-136595119:-|nuORF;ENST00000505813.1_1_5:110284092-110284650:-|nuORF;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;ENST00000476194.1_1_6:136593123-136594302:-|nuORF;ENST00000534792.5_1_6:136590573-136594302:-|nuORF	ENST00000534269.5_1_6:136590404-136595119:-|nuORF	ENST00000534269.5_1_6:136590404-136595119:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3198852539062	2	589.319837	1176.62512	0.045581	2.6862E-05	0.26191	0.00015435	0.30749	0.00018121	589.319835801291	13.213	0.24612	13.213	13.09	13.336	0					21	8	4	0	0	0	0.16685	1	363	363		28.495	16.254	1	89559			40749	545	23643	23644	49469	49469					0.0438731776628174
RVFKEENQK	9	Unmodified	_RVFKEENQK_					0	0	0		ENST00000534269.5_1_6:136590404-136595119:-|nuORF;ENST00000505813.1_1_5:110284092-110284650:-|nuORF;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;ENST00000476194.1_1_6:136593123-136594302:-|nuORF;ENST00000534792.5_1_6:136590573-136594302:-|nuORF	ENST00000534269.5_1_6:136590404-136595119:-|nuORF	ENST00000534269.5_1_6:136590404-136595119:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3197631835938	2	589.319837	1176.62512	-0.025092	-1.4787E-05	0.35764	0.00021076	0.33255	0.00019598	589.3198715079662	13.289	0.34249	13.221	13.073	13.416	-0.067495					26	11	4	0	0	0	0.30459	1	390	390		8.1555	2.8586	1	90744			40750	545	23643	23644	49470	49470					0.0438731776628174
RVFLPDEQRT	10	Unmodified	_RVFLPDEQRT_					0	0	0			REV__ENST00000472011.5_1_1:235530775-235577785:+|nuORF	REV__ENST00000472011.5_1_1:235530775-235577785:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.8944396972656	3	420.894688	1259.66223	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.084	1	91.084	90.584	91.584	0								0	0	0	0.36743	1	24172	24172		7.4771	4.4048	1		+		40751	21362	23644	23645	49471	49471					0.04278989312047088
RVFNETPINPR	11	Unmodified	_RVFNETPINPR_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENST00000513965.5_1_3:128968531-128971678:+|nuORF	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.24554443359375	3	448.245721	1341.71533	0.10431	4.6758E-05	-0.11178	-5.0107E-05	-0.0074716	-3.3491E-06	448.2456471440619	34.058	0.75147	34.125	33.852	34.603	0.066704					68	26	4	0	0	0	0.41299	1	6704	6704		9.5301	4.8142	1	619200			40752	7248	23645	23646	49472	49472					0.05814367094694717
RVFNETPINPR	11	Unmodified	_RVFNETPINPR_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENST00000513965.5_1_3:128968531-128971678:+|nuORF	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	448.245721	1341.71533	0.14838	6.651E-05	-0.33906	-0.00015198	-0.19068	-8.5472E-05	448.2455726490733	34.237	0.64863	34.237	33.969	34.618	0	0.056438	-0.0001054	NaN	9.5301	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	556880			40753	7248	23645	23646							0.05814367094694717
RVFNETPINPR	11	Unmodified	_RVFNETPINPR_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENST00000513965.5_1_3:128968531-128971678:+|nuORF	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	448.245721	1341.71533	0.20822	9.3333E-05	-0.41439	-0.00018575	-0.20617	-9.2415E-05	448.2454336360224	34.114	0.58637	34.18	33.875	34.461	0.06636	-0.00058022	-0.0002067	NaN	9.5301	59	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565550			40754	7248	23645	23646							0.05814367094694717
RVFPDRVFLFK	11	Unmodified	_RVFPDRVFLFK_					0	0	0			REV__ENSG00000136213|ENST00000618655|CHST12	REV__ENSG00000136213|ENST00000618655|CHST12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7361145019531	3	475.278473	1422.81359	0.65201	0.00030989	-0.3883	-0.00018455	0.26371	0.00012534	475.2785639184084	55.855	0.13035	55.926	55.828	55.958	0.070889					6	4	2	0	0	0	0.33303	1	13362	13362		1.1098	0.74308	1	300370	+		40755	15797	23646	23647	49473	49473					0.11909595410543261
RVFQDVAQK	9	Unmodified	_RVFQDVAQK_					0	0	0		nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3;nc|ENSG00000133612|Q96P47-3|AGAP3;nc|ENSG00000133612|Q96P47-6|AGAP3;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000157985|Q9UPQ3-3|AGAP1	nc|ENSG00000133612|Q96P47-5|AGAP3	nc|ENSG00000133612|Q96P47-5|AGAP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.804443359375	2	545.803823	1089.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.227	1	22.227	21.727	22.727	0								0	0	0	0.21283	1	3081	3081		18.373	4.7582	1				40756	3717	23647	23648	49474	49474					0.05187950083131909
RVFQDVAQK	9	Unmodified	_RVFQDVAQK_					0	0	0		nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3;nc|ENSG00000133612|Q96P47-3|AGAP3;nc|ENSG00000133612|Q96P47-6|AGAP3;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000157985|Q9UPQ3-3|AGAP1	nc|ENSG00000133612|Q96P47-5|AGAP3	nc|ENSG00000133612|Q96P47-5|AGAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8043823242188	2	545.803823	1089.59309	0.48305	0.00026365	0.51498	0.00028108	0.99804	0.00054473	545.8045891229276	22.327	0.7289	22.227	21.994	22.723	-0.10034					49	26	3	0	0	0	0.23612	1	3119	3119		18.373	2.5259	1	144400			40757	3717	23647	23648	49475	49475					0.05187950083131909
RVFQDVAQK	9	Unmodified	_RVFQDVAQK_					0	0	0		nc|ENSG00000133612|Q96P47-5|AGAP3;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3;nc|ENSG00000133612|Q96P47-3|AGAP3;nc|ENSG00000133612|Q96P47-6|AGAP3;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1;nc|ENSG00000157985|Q9UPQ3-3|AGAP1	nc|ENSG00000133612|Q96P47-5|AGAP3	nc|ENSG00000133612|Q96P47-5|AGAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8040161132812	2	545.803823	1089.59309	0.37035	0.00020214	0.10686	5.8326E-05	0.47721	0.00026046	545.8039900624862	22.341	0.54763	22.291	22.064	22.612	-0.049377					38	18	3	0	0	0	0.2869	1	3122	3122		10.8	1.2555	1	136250			40758	3717	23647	23648	49476	49476					0.05187950083131909
RVFQETQKLK	10	Unmodified	_RVFQETQKLK_					0	0	0		ENST00000477040.1_1_1:36921391-36921985:-|nuORF;ENST00000488606.5_1_1:36921391-36923601:-|nuORF;ENSG00000116898|ENST00000373116|MRPS15	ENST00000477040.1_1_1:36921391-36921985:-|nuORF	ENST00000477040.1_1_1:36921391-36921985:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.8923645019531	3	426.250583	1275.72992	0.074112	3.159E-05	0.060022	2.5584E-05	0.13413	5.7175E-05	426.25066469464025	20.908	0.60527	20.908	20.622	21.228	0					40	20	3	0	0	0	0.3136	1	2673	2673		17.572	13.985	1	164660			40759	2761	23648	23649	49477	49477					0.10308439242839995
RVFQETQKLK	10	Unmodified	_RVFQETQKLK_					0	0	0		ENST00000477040.1_1_1:36921391-36921985:-|nuORF;ENST00000488606.5_1_1:36921391-36923601:-|nuORF;ENSG00000116898|ENST00000373116|MRPS15	ENST00000477040.1_1_1:36921391-36921985:-|nuORF	ENST00000477040.1_1_1:36921391-36921985:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.89239501953125	3	426.250583	1275.72992	0.18257	7.7823E-05	-0.25303	-0.00010786	-0.070458	-3.0033E-05	426.250436270275	21.078	0.45135	20.968	20.753	21.205	-0.11003					42	15	4	0	0	0	0.25783	1	2746	2746		38.559	29.315	1	278860			40760	2761	23648	23649	49478	49478					0.10308439242839995
RVFQETQKLK	10	Unmodified	_RVFQETQKLK_					0	0	0		ENST00000477040.1_1_1:36921391-36921985:-|nuORF;ENST00000488606.5_1_1:36921391-36923601:-|nuORF;ENSG00000116898|ENST00000373116|MRPS15	ENST00000477040.1_1_1:36921391-36921985:-|nuORF	ENST00000477040.1_1_1:36921391-36921985:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.8922119140625	3	426.250583	1275.72992	0.13635	5.812E-05	0.10663	4.5452E-05	0.24298	0.00010357	426.2506692563621	20.984	0.53615	20.931	20.667	21.204	-0.052912					51	18	4	0	0	0	0.30726	1	2715	2715		23.016	15.07	1	230280			40761	2761	23648	23649	49479	49479					0.10308439242839995
RVFQEVAQK	9	Unmodified	_RVFQEVAQK_					0	0	0		nc|ENSG00000135439|Q99490-2|AGAP2;nc|ENSG00000135439|Q99490|AGAP2;ENSG00000135439|ENST00000547588|AGAP2	nc|ENSG00000135439|Q99490-2|AGAP2	nc|ENSG00000135439|Q99490-2|AGAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3135986328125	2	552.811648	1103.60874	0.19105	0.00010561	2.1034	0.0011628	2.2945	0.0012684	552.8128461059963	22.016	0.43176	21.967	21.83	22.262	-0.049376					26	15	2	0	0	0	0.33911	1	3021	3021		2.9952	1.151	1	50688			40762	3876	23649	23650	49480	49480					0.061082366001983246
RVFSWSQAK	9	Unmodified	_RVFSWSQAK_					0	0	0		ENST00000286692.8_1_1:111682258-111682414:-|nuORF	ENST00000286692.8_1_1:111682258-111682414:-|nuORF	ENST00000286692.8_1_1:111682258-111682414:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.7994384765625	2	554.79854	1107.58253	0.33554	0.00018616	0.70086	0.00038884	1.0364	0.00057499	554.7988231712419	31.891	0.37419	31.891	31.636	32.01	0					28	12	3	0	0	0	0.023171	1	6007	6007		62.869	30.563	1	823620			40763	9143	23650	23651	49481	49481					0.03303967428701071
RVFSWSQAK	9	Unmodified	_RVFSWSQAK_					0	0	0		ENST00000286692.8_1_1:111682258-111682414:-|nuORF	ENST00000286692.8_1_1:111682258-111682414:-|nuORF	ENST00000286692.8_1_1:111682258-111682414:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.7994384765625	2	554.79854	1107.58253	0.41496	0.00023022	0.41002	0.00022748	0.82499	0.0004577	554.7988619009185	31.858	0.34415	31.901	31.709	32.053	0.042364					18	11	2	0	0	0	0.0058682	2	5993	5993;6007		85.764	47.79	1	995620			40764	9143	23650	23651	49482;49483	49482					0.03303967428701071
RVFSWSQAK	9	Unmodified	_RVFSWSQAK_					0	0	0		ENST00000286692.8_1_1:111682258-111682414:-|nuORF	ENST00000286692.8_1_1:111682258-111682414:-|nuORF	ENST00000286692.8_1_1:111682258-111682414:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.798583984375	2	554.79854	1107.58253	0.28256	0.00015676	0.88113	0.00048885	1.1637	0.00064561	554.7988548726762	31.821	0.38741	31.862	31.62	32.007	0.040991					30	13	3	0	0	0	0.023171	2	5972	5972;5995		62.869	32.232	1	602790			40765	9143	23650	23651	49484;49485	49484					0.03303967428701071
RVFTGVVTK	9	Unmodified	_RVFTGVVTK_					0	0	0		CCAR1|p.Q266Hfs*14|1|0.21|ENSG00000060339|chr10:68747538-68747556|GCCCTTATTACAGCAGCCT/-|frameshift_variant;CCAR1|p.Q266Sfs*20|1|0.23|ENSG00000060339|chr10:68747536-68747536|C/-|frameshift_variant;nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	CCAR1|p.Q266Hfs*14|1|0.21|ENSG00000060339|chr10:68747538-68747556|GCCCTTATTACAGCAGCCT/-|frameshift_variant	CCAR1|p.Q266Hfs*14|1|0.21|ENSG00000060339|chr10:68747538-68747556|GCCCTTATTACAGCAGCCT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.80596923828125	2	503.805834	1005.59712	0.18842	9.4929E-05	-0.19363	-9.7553E-05	-0.0052083	-2.624E-06	503.8057394115538	26.331	1.1211	26.292	25.931	27.052	-0.038671					130	39	5	0	0	0	0.052657	1	4329	4329		67.081	21.06	1	1198100			40766	90	23651	23652	49486	49486					0.09454039576860396
RVFVVGVGMTK	11	Oxidation (M)	_RVFVVGVGM(Oxidation (M))TK_		RVFVVGVGM(1)TK		RVFVVGVGM(170)TK	0	0	1		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.8441162109375	2	604.844633	1207.67471	-0.9191	-0.00055591	0.031682	1.9162E-05	-0.88741	-0.00053675	604.8446611915123	34.891	1.0764	34.891	34.588	35.665	0					105	38	4	0	0	0	8.6028E-13	3	6928	6881;6928;6982		168.29	145.55	1	4099300			40767	2710	23652	23653	49487;49488;49489	49488		341			0.07918309450724337
RVFVVGVGMTK	11	Oxidation (M)	_RVFVVGVGM(Oxidation (M))TK_		RVFVVGVGM(1)TK		RVFVVGVGM(58)TK	0	0	1		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.5652160644531	3	403.565514	1207.67471	-1.4617	-0.00058989	0.11939	4.8183E-05	-1.3423	-0.0005417	403.56574634749995	34.871	1.4044	34.871	34.528	35.932	0					170	50	5	0	0	0	0.032167	1	6927	6927		58.398	52.996	1	8114100			40768	2710	23652	23653	49490	49490		341			0.07918309450724337
RVFVVGVGMTK	11	Oxidation (M)	_RVFVVGVGM(Oxidation (M))TK_		RVFVVGVGM(1)TK		RVFVVGVGM(170)TK	0	0	1		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.8440551757812	2	604.844633	1207.67471	-1.047	-0.00063328	0.1515	9.1631E-05	-0.89552	-0.00054165	604.8447237660896	34.768	0.98487	34.844	34.549	35.533	0.075306					111	35	4	0	0	0	8.6028E-13	3	6907	6855;6907;6949		168.29	145.51	1	4395000			40769	2710	23652	23653	49491;49492;49493	49492		341			0.07918309450724337
RVFVVGVGMTK	11	Oxidation (M)	_RVFVVGVGM(Oxidation (M))TK_		RVFVVGVGM(1)TK		RVFVVGVGM(62)TK	0	0	1		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.56512451171875	3	403.565514	1207.67471	-1.7071	-0.00068891	0.31076	0.00012541	-1.3963	-0.0005635	403.5658361963695	34.777	1.5586	34.852	34.496	36.055	0.075306					168	56	6	0	0	0	0.021361	1	6898	6898		61.523	55.791	1	8822600			40770	2710	23652	23653	49494	49494		341			0.07918309450724337
RVFVVGVGMTK	11	Oxidation (M)	_RVFVVGVGM(Oxidation (M))TK_		RVFVVGVGM(1)TK		RVFVVGVGM(180)TK	0	0	1		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.843994140625	2	604.844633	1207.67471	-0.52141	-0.00031537	-0.26929	-0.00016288	-0.7907	-0.00047825	604.8444829526097	34.747	1.0259	34.824	34.533	35.559	0.077377					107	36	4	0	0	0	3.0384E-14	2	6887	6843;6887		179.72	150.28	1	4523600			40771	2710	23652	23653	49495;49496	49496		341			0.07918309450724337
RVFVVGVGMTK	11	Oxidation (M)	_RVFVVGVGM(Oxidation (M))TK_		RVFVVGVGM(1)TK		RVFVVGVGM(55)TK	0	0	1		nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-7|SCP2	nc|ENSG00000116171|P22307-7|SCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.56494140625	3	403.565514	1207.67471	-0.9822	-0.00039638	-0.24469	-9.875E-05	-1.2269	-0.00049513	403.5656252834793	34.745	1.1306	34.822	34.505	35.636	0.077381					146	40	5	0	0	0	0.044534	2	6861	6861;6905		54.823	46.077	1	8987900			40772	2710	23652	23653	49497;49498	49497		341			0.07918309450724337
RVGDVYIPR	9	Unmodified	_RVGDVYIPR_					0	0	0		nc|ENSG00000161547|Q01130-2|SRSF2;ENSG00000161547|ENST00000359995|SRSF2;nc|ENSG00000263465|Q9BRL6-2|SRSF8;ENSG00000263465|ENST00000587424|SRSF8	nc|ENSG00000161547|Q01130-2|SRSF2	nc|ENSG00000161547|Q01130-2|SRSF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2981567382812	2	537.806365	1073.59818	-0.35688	-0.00019193	0.73949	0.0003977	0.38262	0.00020577	537.806638509977	34.469	0.58588	34.469	34.306	34.892	0					46	20	3	0	0	0	0.18378	1	6869	6869		26.021	7.8744	1	697180			40773	5518	23653	23654	49499	49499					0.0643225394574074
RVGDVYIPR	9	Unmodified	_RVGDVYIPR_					0	0	0		nc|ENSG00000161547|Q01130-2|SRSF2;ENSG00000161547|ENST00000359995|SRSF2;nc|ENSG00000263465|Q9BRL6-2|SRSF8;ENSG00000263465|ENST00000587424|SRSF8	nc|ENSG00000161547|Q01130-2|SRSF2	nc|ENSG00000161547|Q01130-2|SRSF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.8065185546875	2	537.806365	1073.59818	-0.49949	-0.00026863	0.89598	0.00048186	0.39649	0.00021324	537.8066927151565	34.383	0.57022	34.449	34.235	34.805	0.06636					48	20	3	0	0	0	0.086462	1	6828	6828		40.239	14.84	1	782820			40774	5518	23653	23654	49500	49500					0.0643225394574074
RVGGAAGRV	9	Unmodified	_RVGGAAGRV_					0	0	0			REV__ENST00000565166.2_1_15:95399162-95399906:+|nuORF	REV__ENST00000565166.2_1_15:95399162-95399906:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7513427734375	2	421.751393	841.488233	-0.019077	-8.0458E-06	-0.002027	-8.5487E-07	-0.021104	-8.9006E-06	421.75133706543886	68.225	3.558	68.225	65.927	69.485	0					213	127	3	0	0	0	0.24581	1	16570	16570		16.942	0	1	517310	+		40775	22353	23654	23655	49501	49501					0.061148733972345326
RVGGAAGRV	9	Unmodified	_RVGGAAGRV_					0	0	0			REV__ENST00000565166.2_1_15:95399162-95399906:+|nuORF	REV__ENST00000565166.2_1_15:95399162-95399906:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.7513122558594	2	421.751393	841.488233	0.044078	1.859E-05	0.018687	7.8811E-06	0.062765	2.6471E-05	421.7512781099673	66.332	2.0153	66.416	65.648	67.663	0.083824					156	72	3	0	0	0	0.21303	1	16548	16548		21.747	1.293	1	583500	+		40776	22353	23654	23655	49502	49502					0.061148733972345326
RVGGAAGRV	9	Unmodified	_RVGGAAGRV_					0	0	0			REV__ENST00000565166.2_1_15:95399162-95399906:+|nuORF	REV__ENST00000565166.2_1_15:95399162-95399906:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7513427734375	2	421.751393	841.488233	0.033817	1.4263E-05	-0.0031136	-1.3132E-06	0.030704	1.2949E-05	421.7512868424377	66.425	0.93214	66.411	65.859	66.791	-0.013588					69	33	3	0	0	0	0.24581	1	16541	16541		16.942	0	1	493560	+		40777	22353	23654	23655	49503	49503					0.061148733972345326
RVGRGSPL	8	Unmodified	_RVGRGSPL_					0	0	0		ENST00000416640.2_3_22:21698217-21699360:+|nuORF	ENST00000416640.2_3_22:21698217-21699360:+|nuORF	ENST00000416640.2_3_22:21698217-21699360:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2595520019531	2	421.253769	840.492984	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.589	1	74.642	74.142	75.142	0.052361								0	0	0	0.34734	1	19114	19114		15.847	0	1				40778	10322	23655	23656	49504	49504					0.06635757539982023
RVGRKGVGG	9	Unmodified	_RVGRKGVGG_					0	0	0			REV__ENST00000460901.1_1_2:120124909-120125765:+|nuORF	REV__ENST00000460901.1_1_2:120124909-120125765:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.2725830078125	2	443.272493	884.530432	0.5119	0.00022691	-0.22703	-0.00010064	0.28487	0.00012627	443.27235334962035	77.389	1.9477	77.389	76.931	78.879	0					195	72	5	0	0	0	0.32733	1	19964	19964		4.756	2.1785	1	7784300	+		40779	21210	23656	23657	49505	49505					0.08354848805618076
RVGRKGVGG	9	Unmodified	_RVGRKGVGG_					0	0	0			REV__ENST00000460901.1_1_2:120124909-120125765:+|nuORF	REV__ENST00000460901.1_1_2:120124909-120125765:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	443.272493	884.530432	0.5119	0.00022691	-0.22703	-0.00010064	0.28487	0.00012627	443.27235334962035	77.389	1.9477	77.389	76.931	78.879	0	-0.020357	-2.7573E-05	NaN	4.756	195	72	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7784300	+		40780	21210	23656	23657							0.08354848805618076
RVGRQGGL	8	Unmodified	_RVGRQGGL_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7513427734375	2	421.751393	841.488233	-0.019077	-8.0458E-06	-0.002027	-8.5487E-07	-0.021104	-8.9006E-06	421.75133706543886	68.225	3.558	68.225	65.927	69.485	0					213	127	3	0	0	0	0.45015	2	16697	16697;16747		5.7604	0.52976	1	517310	+		40781	17254	23657	23658	49506;49507	49506					0.06114873397245901
RVGRQGGL	8	Unmodified	_RVGRQGGL_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.7513427734375	2	421.751393	841.488233	0.044078	1.859E-05	0.018687	7.8811E-06	0.062765	2.6471E-05	421.7512781099673	66.332	2.0153	66.416	65.648	67.663	0.083824					156	72	3	0	0	0	0.45015	1	16806	16806		5.7604	5.7604	1	583500	+		40782	17254	23657	23658	49508	49508					0.06114873397245901
RVGRQGGL	8	Unmodified	_RVGRQGGL_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.75128173828125	2	421.751393	841.488233	0.044078	1.859E-05	0.018687	7.8811E-06	0.062765	2.6471E-05	421.7512781099673	66.332	2.0153	66.416	65.648	67.663	0.083824					156	72	3	0	0	0	0.32778	1	16600	16600		9.3474	0	1	583500	+		40783	17254	23657	23658	49509	49509					0.06114873397245901
RVGRQGGL	8	Unmodified	_RVGRQGGL_					0	0	0			REV__ENSG00000165684|ENST00000684778|SNAPC4	REV__ENSG00000165684|ENST00000684778|SNAPC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7513732910156	2	421.751393	841.488233	-0.011083	-4.6743E-06	0.062758	2.6468E-05	0.051674	2.1794E-05	421.751316250971	68.105	2.9382	68.088	66.631	69.569	-0.016716					195	104	2	0	0	0	0.45015	1	16807	16807		5.7604	0.52976	1	488640	+		40784	17254	23657	23658	49510	49510					0.06114873397245901
RVGRRWRR	8	Unmodified	_RVGRRWRR_					0	0	0		ENST00000297632.7_2_8:125384779-125384848:-|nuORF	ENST00000297632.7_2_8:125384779-125384848:-|nuORF	ENST00000297632.7_2_8:125384779-125384848:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.349365234375	2	571.349932	1140.68531	-0.11586	-6.6199E-05	-0.66827	-0.00038182	-0.78413	-0.00044801	571.3491975876713	12.206	0.20319	12.206	12.1	12.303	0					13	8	2	0	0	0	0.46022	1	63	63		2.3027	0	1	52073			40785	9201	23658	23659	49511	49511					0.12059517730676816
RVGRRWRR	8	Unmodified	_RVGRRWRR_					0	0	0		ENST00000297632.7_2_8:125384779-125384848:-|nuORF	ENST00000297632.7_2_8:125384779-125384848:-|nuORF	ENST00000297632.7_2_8:125384779-125384848:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3489379882812	2	571.349932	1140.68531	-0.19301	-0.00011028	-0.73715	-0.00042117	-0.93016	-0.00053145	571.3492865480418	12.197	0.23019	12.129	12.051	12.281	-0.06806					15	9	2	0	0	0	0.34408	1	56	56		2.3027	0	1	46334			40786	9201	23658	23659	49512	49512					0.12059517730676816
RVGTALPGK	9	Unmodified	_RVGTALPGK_					0	0	0		ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7768859863281	2	449.777077	897.5396	0.099529	4.4766E-05	-0.38981	-0.00017533	-0.29028	-0.00013056	449.77683800288906	18.058	1.3166	18.058	17.69	19.006	0					104	45	4	0	0	0	0.01909	1	1804	1804		65.474	9.2966	1	1078600			40787	2568	23659	23660	49513	49513					0.08673197371274455
RVGTALPGK	9	Unmodified	_RVGTALPGK_					0	0	0		ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.77685546875	2	449.777077	897.5396	-0.015867	-7.1367E-06	-0.2972	-0.00013367	-0.31307	-0.00014081	449.77687489282613	18.194	1.2498	18.077	17.726	18.975	-0.11739					103	43	4	0	0	0	0.011693	2	1845	1845;1891		76.825	9.4809	1	1322500			40788	2568	23659	23660	49514;49515	49514					0.08673197371274455
RVGTALPGK	9	Unmodified	_RVGTALPGK_					0	0	0		ENSG00000114480|ENST00000429644|GBE1;ENST00000484687.1_1_3:81584326-81627079:-|nuORF	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.77685546875	2	449.777077	897.5396	-0.037391	-1.6817E-05	-0.31853	-0.00014327	-0.35592	-0.00016008	449.77685428778415	18.19	1.2265	18.132	17.819	19.046	-0.058172					99	43	4	0	0	0	0.011693	1	1847	1847		76.825	5.6912	1	1313000			40789	2568	23659	23660	49516	49516					0.08673197371274455
RVGTVIGSNK	10	Unmodified	_RVGTVIGSNK_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7711181640625	2	515.803823	1029.59309	0.22269	0.00011486	-0.15693	-8.0947E-05	0.065754	3.3916E-05	515.8036986523651	16.459	0.51149	16.459	16.267	16.779	0					28	15	2	0	0	0	0.31473	1	1316	1316		13.615	1.3742	1	167010			40790	4547	23660	23661	49517	49517					0.07947950083121214
RVGWASMP	8	Unmodified	_RVGWASMP_					0	0	0			REV__ENST00000372086.3_1_1:45811608-45813620:-|nuORF	REV__ENST00000372086.3_1_1:45811608-45813620:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.24188232421875	2	452.228905	902.443257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.506	1	34.506	34.006	35.006	0								0	0	0	0.37078	1	6811	6811		5.2307	0	1		+		40791	20409	23661	23662	49518	49518					-0.01186693460317656
RVGYGITTQ	9	Unmodified	_RVGYGITTQ_					0	0	0			REV__ENSG00000157551|ENST00000398938|KCNJ15	REV__ENSG00000157551|ENST00000398938|KCNJ15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7202453613281	2	497.769448	993.524344	0.38887	0.00019357	0.17595	8.7582E-05	0.56482	0.00028115	497.76938493456777	19.808	0.6925	19.692	19.26	19.952	-0.11592					51	23	3	0	0	0	0.25431	1	2395	2395		9.3831	1.2276	1	75021	+		40792	16788	23662	23663	49519	49519					0.027322857834292336
RVHEVFRVGK	10	Unmodified	_RVHEVFRVGK_					0	0	0		ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.57537841796875	3	409.575401	1225.70437	-0.20449	-8.3752E-05	0.23803	9.7492E-05	0.033546	1.374E-05	409.5755302763136	19.52	0.86196	19.52	19.183	20.045	0					118	30	5	0	0	0	0.014368	2	2249	2249;2296		77.867	51.87	1	1017600			40793	10039	23663	23664	49520;49521	49520					0.10055009511074786
RVHEVFRVGK	10	Unmodified	_RVHEVFRVGK_					0	0	0		ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.575439453125	3	409.575401	1225.70437	0.098915	4.0513E-05	0.027891	1.1423E-05	0.12681	5.1937E-05	409.5754306547386	19.77	0.87097	19.654	19.311	20.182	-0.11592					117	29	5	0	0	0	0.010648	2	2321	2321;2367		81.923	65.649	1	1156700			40794	10039	23663	23664	49522;49523	49522					0.10055009511074786
RVHEVFRVGK	10	Unmodified	_RVHEVFRVGK_					0	0	0		ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.575439453125	3	409.575401	1225.70437	0.15496	6.3466E-05	-0.011471	-4.698E-06	0.14349	5.8768E-05	409.5754380779809	19.645	0.91604	19.589	19.283	20.199	-0.055693					115	32	4	0	0	0	0.01414	2	2289	2289;2337		78.116	60.252	1	1103300			40795	10039	23663	23664	49524;49525	49524					0.10055009511074786
RVHGVSQL	8	Unmodified	_RVHGVSQL_					0	0	0		ENSG00000205629|ENST00000399069|LCMT1;nc|ENSG00000205629|Q9UIC8-2|LCMT1;nc|ENSG00000205629|Q9UIC8-3|LCMT1;ENST00000577157.1_1_16:25139850-25170109:+|nuORF	ENSG00000205629|ENST00000399069|LCMT1	ENSG00000205629|ENST00000399069|LCMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2541198730469	2	448.259051	894.503549	0.41862	0.00018765	-0.15159	-6.7953E-05	0.26703	0.0001197	448.25924673345594	77.169	0.56885	77.169	76.957	77.526	0					32	20	3	0	0	0	0.42758	1	19884	19884		13.508	0	1	326990			40796	8298	23664	23665	49526	49526					0.05207740194430244
RVHNVQLL	8	Unmodified	_RVHNVQLL_					0	0	0			REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.7958068847656	2	489.795801	977.577048	0.11257	5.5138E-05	0.19059	9.335E-05	0.30316	0.00014849	489.7957014672387	15.932	0.81591	15.817	15.46	16.275	-0.11434					52	27	3	0	0	0	0.45307	1	1216	1216		4.756	0	1	281520	+		40797	16723	23665	23666	49527	49527					0.08736288636896461
RVIAIRPIRR	10	Unmodified	_RVIAIRPIRR_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.L685Qfs*5|1|0.06|ENSG00000102910|chr16:48347621-48347622|-/AAAGTCCTTGT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.2820739746094	3	417.282441	1248.82549	-0.15335	-6.3992E-05	-0.52632	-0.00021962	-0.67967	-0.00028361	417.282192209525	23.951	0.78672	23.951	23.699	24.486	0					71	26	4	0	0	0	0.34155	1	3592	3592		14.218	8.4347	1	389830			40798	1793	23666	23667	49528	49528					0.21103256944388704
RVIAIRPIRR	10	Unmodified	_RVIAIRPIRR_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.L685Qfs*5|1|0.06|ENSG00000102910|chr16:48347621-48347622|-/AAAGTCCTTGT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.2821960449219	3	417.282441	1248.82549	0.15248	6.3628E-05	-0.78458	-0.00032739	-0.6321	-0.00026376	417.28206894926313	24.119	0.74356	24.08	23.82	24.563	-0.038927					64	25	3	0	0	0	0.34155	2	3643	3643;3693		14.218	10.631	1	389580			40799	1793	23666	23667	49529;49530	49529					0.21103256944388704
RVIAIRPIRR	10	Unmodified	_RVIAIRPIRR_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2;LONP2|p.L685Qfs*5|1|0.06|ENSG00000102910|chr16:48347621-48347622|-/AAAGTCCTTGT|frameshift_variant	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	417.282441	1248.82549	0.16368	6.8303E-05	-0.73055	-0.00030485	-0.56687	-0.00023654	417.2820927350503	24.146	0.74144	24.073	23.756	24.498	-0.072559	0.038666	-7.0228E-05	NaN	14.218	58	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412090			40800	1793	23666	23667							0.21103256944388704
RVIAPNPA	8	Unmodified	_RVIAPNPA_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.5874328613281	2	419.250695	836.486836	0.051571	2.1621E-05	-1.2991	-0.00054463	-1.2475	-0.00052301	419.24998440831564	33.569	0.54825	33.569	33.259	33.808	0					30	19	2	0	0	0	0.34092	1	6456	6456		8.5933	3.3626	1	121320			40801	4533	23667	23668	49531	49531					0.06205239308462751
RVIAPNPA	8	Unmodified	_RVIAPNPA_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	419.250695	836.486836	-0.049334	-2.0683E-05	-1.1551	-0.00048428	-1.2044	-0.00050497	419.2501417587507	33.417	0.4665	33.484	33.245	33.711	0.066704	-0.028962	0.00018056	NaN	12.532	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163360			40802	4533	23667	23668							0.06205239308462751
RVIAPPLIK	9	Unmodified	_RVIAPPLIK_					0	0	0		nc|ENSG00000172731|Q8TCA0-3|LRRC20;ENSG00000172731|ENST00000446961|LRRC20;nc|ENSG00000172731|Q8TCA0-2|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7822570800781	2	503.84222	1005.66989	0.37757	0.00019024	-0.11712	-5.9009E-05	0.26045	0.00013123	503.84190713783164	38.142	0.38177	38.233	38.101	38.483	0.090885					23	13	2	0	0	0	0.24848	1	7911	7911		13.906	3.8321	1	148730			40803	6658	23668	23669	49532	49532					0.1672779337028487
RVIAPPLIK	9	Unmodified	_RVIAPPLIK_					0	0	0		nc|ENSG00000172731|Q8TCA0-3|LRRC20;ENSG00000172731|ENST00000446961|LRRC20;nc|ENSG00000172731|Q8TCA0-2|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	503.84222	1005.66989	0.28898	0.0001456	0.29384	0.00014805	0.58282	0.00029365	503.8421517208698	38.123	0.5347	38.22	38.007	38.542	0.097527	-0.0064975	0.00020261	NaN	13.906	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149020			40804	6658	23668	23669							0.1672779337028487
RVIQIVINR	9	Unmodified	_RVIQIVINR_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.26953125	2	555.858932	1109.70331	0.2294	0.00012751	-0.63579	-0.00035341	-0.40639	-0.0002259	555.8584260118818	37.718	0.52165	37.816	37.628	38.15	0.097527					36	18	3	0	0	0	0.25988	1	7844	7844		3.9444	2.1002	1	223150			40805	7339	23669	23670	49533	49533					0.15284795142179064
RVISGVLQL	9	Unmodified	_RVISGVLQL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.8137512207031	2	492.813659	983.612765	0.77899	0.0003839	-0.41571	-0.00020487	0.36328	0.00017903	492.8133794079359	54.879	0.4368	54.879	54.602	55.039	0					40	15	3	0	0	0	0.027957	2	13052	13052;13103		61.09	8.8216	1	1389700			40806	1574	23670	23671	49534;49535	49534					0.12030326093906751
RVISGVLQL	9	Unmodified	_RVISGVLQL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.813720703125	2	492.813659	983.612765	0.67967	0.00033495	-0.70363	-0.00034676	-0.023955	-1.1805E-05	492.81329773910886	54.842	0.40548	54.905	54.642	55.048	0.063202					27	14	2	0	0	0	0.038291	1	13050	13050		57.249	13.391	1	1699200			40807	1574	23670	23671	49536	49536					0.12030326093906751
RVISGVLQL	9	Unmodified	_RVISGVLQL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.81353759765625	2	492.813659	983.612765	0.57138	0.00028158	-0.064396	-3.1735E-05	0.50698	0.00024985	492.81347199477364	55.258	1.1202	55.239	54.678	55.798	-0.019077					85	41	3	0	0	0	0.048871	2	13074	13074;13126		53.317	7.2958	1	1750800			40808	1574	23670	23671	49537;49538	49537					0.12030326093906751
RVITEEEKNFK	11	Unmodified	_RVITEEEKNFK_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.9206848144531	3	464.920903	1391.74088	-0.23605	-0.00010975	-0.27917	-0.00012979	-0.51522	-0.00023954	464.9207998820736	22.731	0.77784	22.731	22.446	23.224	0					75	26	4	0	0	0	1.5666E-05	1	3241	3241		118.97	95.003	1	429110			40809	6183	23671	23672	49539	49539					0.06067796826459926
RVITEEEKNFK	11	Unmodified	_RVITEEEKNFK_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.9208068847656	3	464.920903	1391.74088	-0.21352	-9.927E-05	-0.16982	-7.8951E-05	-0.38334	-0.00017822	464.92085280105556	22.878	0.73013	22.791	22.461	23.191	-0.087608					72	25	4	0	0	0	0.00066348	1	3259	3259		101.57	72.287	1	444850			40810	6183	23671	23672	49540	49540					0.06067796826459926
RVITEEEKNFK	11	Unmodified	_RVITEEEKNFK_					0	0	0		nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000570149.1_1_16:89628679-89629447:+|nuORF;ENST00000484610.5_1_16:89627907-89629447:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF	nc|ENSG00000167526|P26373-2|RPL13	nc|ENSG00000167526|P26373-2|RPL13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.9209289550781	3	464.920903	1391.74088	0.080046	3.7215E-05	-0.47404	-0.00022039	-0.394	-0.00018318	464.9207496479054	22.873	0.77668	22.828	22.529	23.305	-0.044865					77	27	4	0	0	0	0.0026176	1	3279	3279		85.294	60.139	1	472990			40811	6183	23671	23672	49541	49541					0.06067796826459926
RVIVNHRIYYK	11	Unmodified	_RVIVNHRIYYK_					0	0	0		ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.62103271484375	3	487.62101	1459.8412	0.13169	6.4217E-05	-0.91204	-0.00044473	-0.78035	-0.00038051	487.6209376471148	23.718	0.60526	23.718	23.48	24.085	0					61	20	4	0	0	0	0.38765	1	3563	3563		12.856	8.14	1	225070			40812	4673	23672	23673	49542	49542					0.1296749867078688
RVIVNHRIYYK	11	Unmodified	_RVIVNHRIYYK_					0	0	0		ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.6209716796875	3	487.62101	1459.8412	0.21819	0.00010639	-1.0675	-0.00052053	-0.8493	-0.00041414	487.62080491865095	23.893	0.76602	23.82	23.501	24.267	-0.072559					67	25	4	0	0	0	0.31508	1	3601	3601		20.871	15.003	1	273960			40813	4673	23672	23673	49543	49543					0.1296749867078688
RVIVNHRIYYK	11	Unmodified	_RVIVNHRIYYK_					0	0	0		ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	ENSG00000145780|ENST00000274457|FEM1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.6209411621094	3	487.62101	1459.8412	0.37587	0.00018328	-1.4982	-0.00073056	-1.1223	-0.00054728	487.6208224027791	23.931	0.68841	23.892	23.534	24.222	-0.038927					59	23	3	0	0	0	0.36161	1	3610	3610		16.275	7.5228	1	269360			40814	4673	23672	23673	49544	49544					0.1296749867078688
RVKERDFFLK	10	Unmodified	_RVKERDFFLK_					0	0	0		ENST00000461096.6_1_1:109608842-109618580:-|nuORF	ENST00000461096.6_1_1:109608842-109618580:-|nuORF	ENST00000461096.6_1_1:109608842-109618580:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	446.5943908691406	3	446.594461	1336.76155	-0.072488	-3.2373E-05	-0.092173	-4.1164E-05	-0.16466	-7.3537E-05	446.5943760164916	28.181	1.5153	28.181	27.87	29.385	0					128	53	5	0	0	0	0.085393	1	4885	4885		51.264	34.989	1	2270600			40815	10742	23673	23674	49545	49545					0.106644319967927
RVKERDFFLK	10	Unmodified	_RVKERDFFLK_					0	0	0		ENST00000461096.6_1_1:109608842-109618580:-|nuORF	ENST00000461096.6_1_1:109608842-109618580:-|nuORF	ENST00000461096.6_1_1:109608842-109618580:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	446.59429931640625	3	446.594461	1336.76155	-0.058864	-2.6288E-05	-0.048949	-2.186E-05	-0.10781	-4.8149E-05	446.5943887495465	28.247	1.2419	28.242	27.851	29.093	-0.0042572					132	43	4	0	0	0	0.10788	2	4904	4904;5034		46.34	26.353	1	1921600			40816	10742	23673	23674	49546;49547	49546					0.106644319967927
RVKERDFFLK	10	Unmodified	_RVKERDFFLK_					0	0	0		ENST00000461096.6_1_1:109608842-109618580:-|nuORF	ENST00000461096.6_1_1:109608842-109618580:-|nuORF	ENST00000461096.6_1_1:109608842-109618580:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.59429931640625	3	446.594461	1336.76155	-0.063643	-2.8423E-05	-0.128	-5.7165E-05	-0.19164	-8.5588E-05	446.59438361180514	28.211	1.2775	28.211	27.849	29.127	0.00046921					135	45	4	0	0	0	0.0645	1	4896	4896		55.839	39.564	1	2221000			40817	10742	23673	23674	49548	49548					0.106644319967927
RVKGEVLHT	9	Unmodified	_RVKGEVLHT_					0	0	0		MSTA_dup8886|chr7:135252100-135252470:-|1.1104775019567894|0.0484227253500368|4.52|519.0|17|1|anti-sense	MSTA_dup8886|chr7:135252100-135252470:-|1.1104775019567894|0.0484227253500368|4.52|519.0|17|1|anti-sense	MSTA_dup8886|chr7:135252100-135252470:-|1.1104775019567894|0.0484227253500368|4.52|519.0|17|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.338134765625	2	519.806365	1037.59818	0.34402	0.00017882	-0.30515	-0.00015862	0.038873	2.0206E-05	519.8062097294369	25.147	0.63242	25.147	24.843	25.475	0					41	21	3	0	0	0	0.25988	1	4036	4036		3.9444	0	1	172510			40818	12547	23674	23675	49549	49549					0.08088253945743418
RVKKCVWHLP	10	Unmodified	_RVKKCVWHLP_					0	0	0			REV__ENST00000538029.1_1_12:9102760-9162130:+|nuORF	REV__ENST00000538029.1_1_12:9102760-9162130:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3687744140625	2	633.36861	1264.72267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.27	1	119.27	118.77	119.77	0								0	0	0	0.38209	1	30781	30781		0	0	1		+		40819	15972	23675	23676	49550	49550					0.10089428161450087
RVKKCVWHLP	10	Unmodified	_RVKKCVWHLP_					0	0	0			REV__ENST00000538029.1_1_12:9102760-9162130:+|nuORF	REV__ENST00000538029.1_1_12:9102760-9162130:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3690185546875	2	633.36861	1264.72267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.032	1	11.936	11.436	12.436	-0.096607								0	0	0	0.38209	1	8	8		0	0	1		+		40820	15972	23675	23676	49551	49551					0.10089428161450087
RVKKDWIQLP	10	Unmodified	_RVKKDWIQLP_					0	0	0			REV__ENST00000567660.1_1_16:58150774-58163019:-|nuORF	REV__ENST00000567660.1_1_16:58150774-58163019:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.88232421875	2	641.885147	1281.75574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.44	1	101.43	100.93	101.93	-0.0054703								0	0	0	0.38187	1	27077	27077		1.3295	0.13619	1		+		40821	13735	23676	23677	49552	49552					0.12613333485114708
RVKKSGVSV	9	Unmodified	_RVKKSGVSV_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;ZZEF1|p.S2060Qfs*9|1|0.37|ENSG00000074755|chr17:4042557-4042557|A/-|frameshift_variant;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.3033447265625	2	480.303458	958.592364	-0.15058	-7.2326E-05	-0.055302	-2.6562E-05	-0.20588	-9.8887E-05	480.30333990877745	13.269	0.28383	13.269	13.174	13.457	0					19	9	3	0	0	0	0.16685	1	378	378		28.495	13.656	1	141740			40822	1026	23677	23678	49553	49553					0.11141155434097527
RVKKSGVSV	9	Unmodified	_RVKKSGVSV_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;ZZEF1|p.S2060Qfs*9|1|0.37|ENSG00000074755|chr17:4042557-4042557|A/-|frameshift_variant;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.30340576171875	2	480.303458	958.592364	-0.1034	-4.9663E-05	-0.13271	-6.3742E-05	-0.23611	-0.00011341	480.30334004957456	13.333	0.42351	13.234	13.069	13.492	-0.099291					21	14	3	0	0	0	0.25112	1	400	400		16.149	6.0752	1	133750			40823	1026	23677	23678	49554	49554					0.11141155434097527
RVKKSGVSV	9	Unmodified	_RVKKSGVSV_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;ZZEF1|p.S2060Qfs*9|1|0.37|ENSG00000074755|chr17:4042557-4042557|A/-|frameshift_variant;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.3033447265625	2	480.303458	958.592364	-0.12893	-6.1928E-05	-0.066545	-3.1962E-05	-0.19548	-9.389E-05	480.30339125757064	13.331	0.35712	13.264	13.162	13.519	-0.067496					24	12	3	0	0	0	0.25112	1	397	397		16.149	6.0752	1	124650			40824	1026	23677	23678	49555	49555					0.11141155434097527
RVKRRKAPTP	10	Unmodified	_RVKRRKAPTP_					0	0	0			REV__nc|ENSG00000085185|Q5H9F3-1|BCORL1	REV__nc|ENSG00000085185|Q5H9F3-1|BCORL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.92901611328125	3	403.594796	1207.76256	-0.5631	-0.00022726	0.51203	0.00020665	-0.051072	-2.0612E-05	403.594793719205	12.545	0.62474	12.477	12.226	12.851	-0.06806					32	20	3	0	0	0	0.41805	1	180	180		0.15932	0	1	87534	+		40825	13955	23678	23679	49556	49556					0.16698691156352652
RVKTVPLLSKV	11	Unmodified	_RVKTVPLLSKV_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.836669921875	2	620.410998	1238.80744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.02	1	115.02	114.52	115.52	0								0	0	0	0.38126	1	29821	29821		1.1933	0	1				40826	5530	23679	23680	49557	49557					0.1975907717901464
RVKVREDLP	9	Unmodified	_RVKVREDLP_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.S1928Lfs*17|1|0.08|ENSG00000083857|chr4:186620804-186620804|A/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.33349609375	2	556.332747	1110.65094	0.21016	0.00011692	-0.94299	-0.00052462	-0.73283	-0.0004077	556.3328069313311	35.549	0.65585	35.549	35.251	35.907	0					53	23	4	0	0	0	0.19747	2	7160	7160;7167		24.021	1.2843	1	579950			40827	1234	23680	23681	49558;49559	49558					0.10004212008561808
RVKVREDLP	9	Unmodified	_RVKVREDLP_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.S1928Lfs*17|1|0.08|ENSG00000083857|chr4:186620804-186620804|A/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3328857421875	2	556.332747	1110.65094	-0.16522	-9.1915E-05	-1.4094	-0.00078408	-1.5746	-0.000876	556.3329770559809	35.464	0.66495	35.55	35.232	35.897	0.085541					55	23	3	0	0	0	0.15219	1	7105	7105		30.637	3.0077	1	486430			40828	1234	23680	23681	49560	49560					0.10004212008561808
RVLALGGE	8	Unmodified	_RVLALGGE_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH;ENST00000514745.5_1_4:57219701-57248665:-|nuORF;AASDH|p.T659Hfs*9|1|0.33|ENSG00000157426|chr4:56349776-56349776|T/-|frameshift_variant	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5531005859375	2	407.742702	813.470852	-0.11447	-4.6673E-05	0.093086	3.7955E-05	-0.02138	-8.7174E-06	407.7426174549718	16.902	0.49274	16.902	16.749	17.242	0					26	16	2	0	0	0	0.34337	1	1433	1433		5.2307	0	1	50283			40829	5306	23681	23682	49561	49561					0.056655330715898344
RVLDALVAREK	11	Unmodified	_RVLDALVAREK_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.594482421875	3	423.9261	1268.75647	0.22363	9.4801E-05	0.6198	0.00026275	0.84343	0.00035755	423.926273941223	33.796	0.82432	33.796	33.512	34.336	0					53	29	2	0	0	0	0.33251	1	6539	6539		4.6037	3.9061	1	485640			40830	7218	23682	23683	49562	49562					0.13284128134182538
RVLDFDVKRK	10	Unmodified	_RVLDFDVKRK_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000480438.1_1_X:53564515-53565341:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.92254638671875	3	425.922578	1274.7459	-0.18732	-7.9784E-05	0.051186	2.1801E-05	-0.13613	-5.7983E-05	425.9225848587279	26.319	1.0215	26.319	26.042	27.063	0					93	35	4	0	0	0	0.017634	2	4324	4279;4324		74.306	60.088	1	1225600			40831	1286	23683	23684	49563;49564	49564					0.11952145479745013
RVLDFDVKRK	10	Unmodified	_RVLDFDVKRK_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000480438.1_1_X:53564515-53565341:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.92254638671875	3	425.922578	1274.7459	-0.22169	-9.4423E-05	0.04563	1.9435E-05	-0.17606	-7.4988E-05	425.9225725713316	26.304	0.98252	26.265	25.985	26.968	-0.03867					90	34	4	0	0	0	0.026457	2	4328	4282;4328		64.688	50.469	1	1198700			40832	1286	23683	23684	49565;49566	49566					0.11952145479745013
RVLDFDVKRK	10	Unmodified	_RVLDFDVKRK_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000480438.1_1_X:53564515-53565341:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.9225158691406	3	425.922578	1274.7459	0.041346	1.761E-05	-0.16985	-7.2344E-05	-0.12851	-5.4734E-05	425.92250556515893	26.417	1.0177	26.394	26.073	27.09	-0.022238					88	35	4	0	0	0	0.0046104	2	4340	4297;4340		93.928	69.964	1	1440800			40833	1286	23683	23684	49567;49568	49568					0.11952145479745013
RVLDQARQR	9	Unmodified	_RVLDQARQR_					0	0	0		nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3314819335938	2	571.33107	1140.64759	0.40576	0.00023182	0.063927	3.6524E-05	0.46968	0.00026834	571.3310581951066	92.467	0.66455	92.467	92.242	92.907	0.00046539					71	46	2	0	0	0	0.34681	1	24599	24599		1.8442	1.8442	1	219400			40834	4681	23684	23685	49569	49569					0.08288961954553997
RVLDRELVQSY	11	Unmodified	_RVLDRELVQSY_					0	0	0		nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000253873|ENST00000398587|PCDHGA11;nc|ENSG00000253873|Q9Y5H2-2|PCDHGA11	nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11	nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7660827636719	3	459.921014	1376.74121	-0.2797	-0.00012864	-2.2415	-0.0010309	-2.5212	-0.0011596	460.2544712494131	13.273	0.27741	13.273	13.118	13.396	0					15	9	3	0	0	0	0.33326	1	346	346		1.4551	0	1	14549			40835	8606	23685	23686	49570	49570					0.06791216546321266
RVLDVTKKK	9	Unmodified	_RVLDVTKKK_					0	0	0		ENST00000513518.1_1_4:104013755-104017411:-|nuORF;nc|ENSG00000164039|Q9BUT1-2|BDH2;ENST00000492366.5_1_4:104007535-104017411:-|nuORF;ENSG00000164039|ENST00000296424|BDH2	ENST00000513518.1_1_4:104013755-104017411:-|nuORF	ENST00000513518.1_1_4:104013755-104017411:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3006591796875	2	543.853316	1085.69208	0.19971	0.00010861	0.53127	0.00028893	0.73098	0.00039754	543.8535361201907	13.952	0.27835	13.847	13.713	13.991	-0.10466					17	9	2	0	0	0	0.25756	1	570	570		7.1017	3.8204	1	53281			40836	5772	23686	23687	49571	49571					0.152659730480309
RVLEAIQKK	9	Unmodified	_RVLEAIQKK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8450927734375	2	542.84549	1083.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.608	1	17.608	17.108	18.108	0								0	0	0	0.24773	1	1681	1681		7.1017	0.37856	1				40837	6352	23687	23688	49572	49572					0.1379368653099391
RVLEAIQKK	9	Unmodified	_RVLEAIQKK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8451538085938	2	542.84549	1083.67643	0.35052	0.00019028	-0.14039	-7.621E-05	0.21013	0.00011407	542.8453687042496	17.755	0.32299	17.637	17.489	17.812	-0.11739					22	10	3	0	0	0	0.32638	1	1737	1737		4.897	0	1	64729			40838	6352	23687	23688	49573	49573					0.1379368653099391
RVLEAIQKK	9	Unmodified	_RVLEAIQKK_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.845458984375	2	542.84549	1083.67643	0.45865	0.00024898	-0.44518	-0.00024166	0.013476	7.3153E-06	542.8452521331413	17.759	0.47575	17.699	17.502	17.978	-0.060429					26	16	2	0	0	0	0.32638	1	1731	1731		4.897	0.95262	1	51707			40839	6352	23687	23688	49574	49574					0.1379368653099391
RVLEALLPLK	10	Unmodified	_RVLEALLPLK_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3790893554688	2	576.379166	1150.74378	0.55836	0.00032182	-0.27085	-0.00015611	0.28751	0.00016571	576.3788898150856	54.226	0.6063	54.289	54.088	54.694	0.063202					41	22	3	0	0	0	0.21589	1	12892	12892		30.703	15.455	1	555840			40840	6378	23688	23689	49575	49575					0.174437167419228
RVLEALLPLK	10	Unmodified	_RVLEALLPLK_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.7881469726562	2	576.379166	1150.74378	0.44105	0.00025421	-0.052406	-3.0206E-05	0.38865	0.00022401	576.3790709822613	54.363	0.62049	54.347	54.085	54.706	-0.015923					42	21	3	0	0	0	0.26647	1	12923	12923		28.234	12.985	1	604290			40841	6378	23688	23689	49576	49576					0.174437167419228
RVLEALLPLK	10	Unmodified	_RVLEALLPLK_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	576.379166	1150.74378	0.49224	0.00028372	-0.14575	-8.4009E-05	0.34649	0.00019971	576.378965162947	54.288	0.65826	54.288	54.05	54.708	0	-0.020441	1.3391E-05	NaN	30.703	38	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	533180			40842	6378	23688	23689							0.174437167419228
RVLEKDSVTLK	11	Unmodified	_RVLEKDSVTLK_					0	0	0		ENST00000476031.1_1_1:161515507-161519517:-|nuORF;ENSG00000203747|ENST00000443193|FCGR3A	ENST00000476031.1_1_1:161515507-161519517:-|nuORF	ENST00000476031.1_1_1:161515507-161519517:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.92578125	3	429.925877	1286.7558	-0.10982	-4.7215E-05	-0.30625	-0.00013167	-0.41608	-0.00017888	429.9258277596212	24.678	0.89979	24.678	24.367	25.267	0					103	30	5	0	0	0	0.0026176	2	3807	3807;3853		85.294	64.883	1	1365700			40843	8185	23689	23690	49577;49578	49577					0.12389288694475908
RVLEKDSVTLK	11	Unmodified	_RVLEKDSVTLK_					0	0	0		ENST00000476031.1_1_1:161515507-161519517:-|nuORF;ENSG00000203747|ENST00000443193|FCGR3A	ENST00000476031.1_1_1:161515507-161519517:-|nuORF	ENST00000476031.1_1_1:161515507-161519517:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.92578125	3	429.925877	1286.7558	-0.1183	-5.086E-05	-0.37007	-0.0001591	-0.48837	-0.00020996	429.9258071155631	24.754	0.9104	24.698	24.404	25.314	-0.055931					106	31	5	0	0	0	0.0061529	2	3870	3826;3870		77.813	64.278	1	1565000			40844	8185	23689	23690	49579;49580	49580					0.12389288694475908
RVLEKDSVTLK	11	Unmodified	_RVLEKDSVTLK_					0	0	0		ENST00000476031.1_1_1:161515507-161519517:-|nuORF;ENSG00000203747|ENST00000443193|FCGR3A	ENST00000476031.1_1_1:161515507-161519517:-|nuORF	ENST00000476031.1_1_1:161515507-161519517:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.92559814453125	3	429.925877	1286.7558	-0.31999	-0.00013757	-0.23682	-0.00010182	-0.55682	-0.00023939	429.92585782282845	24.698	0.9805	24.667	24.426	25.406	-0.031408					112	33	5	0	0	0	0.0095972	2	3814	3814;3862		70.524	56.354	1	1618000			40845	8185	23689	23690	49581;49582	49581					0.12389288694475908
RVLESVQKK	9	Unmodified	_RVLESVQKK_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8355712890625	2	543.835123	1085.65569	0.2484	0.00013509	0.68691	0.00037357	0.93531	0.00050865	543.8353943357818	14.296	0.28904	14.191	14.079	14.368	-0.10466					20	9	3	0	0	0	0.30824	1	701	701		7.609	2.3121	1	95072			40846	3324	23690	23691	49583	49583					0.11629096151318663
RVLKKQSPQ	9	Unmodified	_RVLKKQSPQ_					0	0	0			REV__ENSG00000214237|ENST00000465419|MINDY4B	REV__ENSG00000214237|ENST00000465419|MINDY4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.262451171875	2	542.33529	1082.65603	0.21204	0.00011499	-0.6085	-0.00033001	-0.39647	-0.00021502	542.3348809829672	12.881	0.14056	12.782	12.7	12.841	-0.099291					6	4	2	0	0	0	0.25988	1	275	275		3.9444	0	1	18150	+		40847	19057	23691	23692	49584	49584					0.1180051587118669
RVLLSNPLAK	10	Unmodified	_RVLLSNPLAK_					0	0	0		ENST00000424751.2_1_10:42971400-42987542:+|nuORF	ENST00000424751.2_1_10:42971400-42987542:+|nuORF	ENST00000424751.2_1_10:42971400-42987542:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.800537109375	2	555.853316	1109.69208	-0.43379	-0.00024112	0.060275	3.3504E-05	-0.37352	-0.00020762	555.8531707921485	35.316	0.27438	35.393	35.167	35.441	0.077377					14	9	2	0	0	0	0.31642	1	7061	7061		10.8	0	1	112410			40848	10400	23692	23693	49585	49585					0.14161973048021537
RVLNVGVAEV	10	Unmodified	_RVLNVGVAEV_					0	0	0		ENSG00000180316|ENST00000636260|PNPLA1;nc|ENSG00000180316|Q8N8W4|PNPLA1	ENSG00000180316|ENST00000636260|PNPLA1	ENSG00000180316|ENST00000636260|PNPLA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.6609497070312	2	528.314023	1054.61349	0.35064	0.00018525	-2.2532	-0.0011904	-1.9026	-0.0010051	528.8135575915649	94.205	0.22298	94.292	94.188	94.411	0.08667					26	18	2	0	0	0	0.32054	1	25117	25117		3.2813	0.70383	1	141950			40849	7178	23693	23694	49586	49586					0.08837120742941806
RVLPKEPELA	10	Unmodified	_RVLPKEPELA_					0	0	0			REV__ACOT1|p.L296*|1|0.14|ENSG00000184227|chr14:73543274-73543274|C/-|frameshift_variant	REV__ACOT1|p.L296*|1|0.14|ENSG00000184227|chr14:73543274-73543274|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8432006835938	2	576.342781	1150.67101	0.12211	7.0376E-05	3.6732	0.002117	3.7953	0.0021874	576.3451485405334	115.28	0.023651	115.26	115.24	115.26	-0.020988					4	2	2	0	0	0	0.32123	1	29894	29894		1.6526	0.32309	1	13447	+		40850	13073	23694	23695	49587	49587					0.10169962948521061
RVLRQQSQIK	10	Unmodified	_RVLRQQSQIK_					0	0	0			REV__ENST00000533982.1_2_11:62473018-62474712:-|nuORF	REV__ENST00000533982.1_2_11:62473018-62474712:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	628.3829956054688	2	628.383303	1254.75205	0.2283	0.00014346	-0.59765	-0.00037555	-0.36935	-0.00023209	628.3829522479353	85.763	2.8517	85.847	85.001	87.853	0.084251					238	119	2	0	0	0	0.34795	3	22512	22512;22553;22604		13.042	0	1	19254000	+		40851	22048	23695	23696	49588;49589;49590	49588					0.13486663711250912
RVLRQQSQIK	10	Unmodified	_RVLRQQSQIK_					0	0	0			REV__ENST00000533982.1_2_11:62473018-62474712:-|nuORF	REV__ENST00000533982.1_2_11:62473018-62474712:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	628.383303	1254.75205	0.55697	0.00034999	-0.88471	-0.00055594	-0.32774	-0.00020595	628.3828448290129	85.886	2.7494	85.886	85.015	87.765	0	0.046337	-0.00012561	NaN	13.042	197	111	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21133000	+		40852	22048	23695	23696							0.13486663711250912
RVLRQQSQIK	10	Unmodified	_RVLRQQSQIK_					0	0	0			REV__ENST00000533982.1_2_11:62473018-62474712:-|nuORF	REV__ENST00000533982.1_2_11:62473018-62474712:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	628.383303	1254.75205	0.42903	0.0002696	-0.80229	-0.00050415	-0.37326	-0.00023455	628.382845346817	85.795	3.4389	85.786	84.981	88.42	-0.0090027	-0.053541	-2.2022E-05	NaN	13.042	296	149	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19772000	+		40853	22048	23695	23696							0.13486663711250912
RVLSKAFSR	9	Unmodified	_RVLSKAFSR_					0	0	0		ENSG00000178860|ENST00000325509|MSC;ENSG00000118526|ENST00000367882|TCF21	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2720947265625	2	532.322183	1062.62981	0.48906	0.00026034	0.35844	0.00019081	0.8475	0.00045114	532.3223101501213	20.138	0.55579	20.138	19.986	20.542	0					26	20	2	0	0	0	0.25431	1	2468	2468		9.3831	0	1	162930			40854	7080	23696	23697	49591	49591					0.101002466996988
RVLSKAFSR	9	Unmodified	_RVLSKAFSR_					0	0	0		ENSG00000178860|ENST00000325509|MSC;ENSG00000118526|ENST00000367882|TCF21	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8245849609375	2	532.322183	1062.62981	0.79669	0.0004241	0.033122	1.7632E-05	0.82981	0.00044173	532.3221687430491	20.293	0.37985	20.24	20.093	20.472	-0.052912					21	13	2	0	0	0	0.30459	1	2492	2492		8.1555	0.24537	1	131350			40855	7080	23696	23697	49592	49592					0.101002466996988
RVLSKAFSRL	10	Unmodified	_RVLSKAFSRL_					0	0	0		ENSG00000178860|ENST00000325509|MSC;ENSG00000118526|ENST00000367882|TCF21	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8634643554688	2	588.864215	1175.71388	0.44437	0.00026168	-0.91343	-0.00053788	-0.46905	-0.00027621	588.8636910575707	33.472	0.57944	33.472	33.259	33.839	0					48	20	3	0	0	0	0.31433	1	6510	6510		10.899	4.6932	1	348510			40856	7080	23697	23698	49593	49593					0.13304777796611233
RVLSKAFSRL	10	Unmodified	_RVLSKAFSRL_					0	0	0		ENSG00000178860|ENST00000325509|MSC;ENSG00000118526|ENST00000367882|TCF21	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.8638305664062	2	588.864215	1175.71388	0.46882	0.00027607	-0.62379	-0.00036733	-0.15497	-9.1259E-05	588.8638347163006	33.32	0.63178	33.384	33.152	33.784	0.064312					45	22	3	0	0	0	0.19037	1	6459	6459		33.821	12.284	1	430650			40857	7080	23697	23698	49594	49594					0.13304777796611233
RVLSKAFSRL	10	Unmodified	_RVLSKAFSRL_					0	0	0		ENSG00000178860|ENST00000325509|MSC;ENSG00000118526|ENST00000367882|TCF21	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.8636474609375	2	588.864215	1175.71388	0.21255	0.00012517	-0.46858	-0.00027593	-0.25602	-0.00015076	588.8638984746633	33.338	0.52358	33.405	33.215	33.739	0.066704					41	18	3	0	0	0	0.27086	1	6446	6446		32.037	12.78	1	431430			40858	7080	23697	23698	49595	49595					0.13304777796611233
RVLSSIEQK	9	Unmodified	_RVLSSIEQK_					0	0	0		nc|ENSG00000175793|P31947-2|SFN;ENSG00000175793|ENST00000339276|SFN	nc|ENSG00000175793|P31947-2|SFN	nc|ENSG00000175793|P31947-2|SFN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.311767578125	2	530.31148	1058.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.974	1	19.974	19.474	20.474	0								0	0	0	0.00048279	1	2396	2396		103.82	0	1				40859	6885	23698	23699	49596	49596					0.08144816880326289
RVLSSIEQK	9	Unmodified	_RVLSSIEQK_					0	0	0		nc|ENSG00000175793|P31947-2|SFN;ENSG00000175793|ENST00000339276|SFN	nc|ENSG00000175793|P31947-2|SFN	nc|ENSG00000175793|P31947-2|SFN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3115844726562	2	530.31148	1058.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.212	1	20.096	19.596	20.596	-0.11592								0	0	0	0.0001189	1	2470	2470		114.19	0	1				40860	6885	23698	23699	49597	49597					0.08144816880326289
RVLSSIEQK	9	Unmodified	_RVLSSIEQK_					0	0	0		nc|ENSG00000175793|P31947-2|SFN;ENSG00000175793|ENST00000339276|SFN	nc|ENSG00000175793|P31947-2|SFN	nc|ENSG00000175793|P31947-2|SFN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3117065429688	2	530.31148	1058.60841	0.71726	0.00038037	-0.337	-0.00017871	0.38026	0.00020166	530.3114346689331	20.065	1.0374	20.009	19.544	20.582	-0.055693					68	37	4	0	0	0	0.0099976	1	2435	2435		79.427	0	1	698400			40861	6885	23698	23699	49598	49598					0.08144816880326289
RVLTSVFTK	9	Unmodified	_RVLTSVFTK_					0	0	0		ENSG00000178573|ENST00000326043|MAF	ENSG00000178573|ENST00000326043|MAF	ENSG00000178573|ENST00000326043|MAF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8189086914062	2	525.818941	1049.62333	-0.55765	-0.00029322	0.18825	9.8987E-05	-0.3694	-0.00019424	525.8189583879943	34.565	0.83361	34.565	34.336	35.17	0					83	29	4	0	0	0	0.0036476	1	6853	6853		94.909	54.959	1	1423200			40862	7062	23699	23700	49599	49599					0.10050308748327552
RVLTSVFTK	9	Unmodified	_RVLTSVFTK_					0	0	0		ENSG00000178573|ENST00000326043|MAF	ENSG00000178573|ENST00000326043|MAF	ENSG00000178573|ENST00000326043|MAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8190307617188	2	525.818941	1049.62333	-0.70923	-0.00037292	0.16352	8.5984E-05	-0.5457	-0.00028694	525.8189524545378	34.49	0.8271	34.565	34.244	35.071	0.075306					79	29	4	0	0	0	0.0027197	1	6818	6818		104.48	39.249	1	1512100			40863	7062	23699	23700	49600	49600					0.10050308748327552
RVLTSVFTK	9	Unmodified	_RVLTSVFTK_					0	0	0		ENSG00000178573|ENST00000326043|MAF	ENSG00000178573|ENST00000326043|MAF	ENSG00000178573|ENST00000326043|MAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.817626953125	2	525.818941	1049.62333	-0.029106	-1.5304E-05	-0.6427	-0.00033794	-0.67181	-0.00035325	525.818498801926	34.47	0.94538	34.548	34.249	35.195	0.077377					86	33	4	0	0	0	0.0035713	1	6830	6830		97.741	32.506	1	1491300			40864	7062	23699	23700	49601	49601					0.10050308748327552
RVLWQWTKVKM	11	Unmodified	_RVLWQWTKVKM_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.27288818359375	3	492.28323	1473.82786	0.16293	8.0206E-05	0.87807	0.00043226	1.041	0.00051247	492.283412042062	16.709	0.36523	16.595	16.33	16.695	-0.11434					20	12	3	0	0	0	0.33348	1	1347	1347		0.40827	0	1	37284			40865	3175	23700	23701	49602	49602					0.10989924567138587
RVLWRRRQRQR	11	Unmodified	_RVLWRRRQRQR_					0	0	0		ENST00000263754.4_1_3:20081618-20081714:+|nuORF	ENST00000263754.4_1_3:20081618-20081714:+|nuORF	ENST00000263754.4_1_3:20081618-20081714:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.660888671875	3	537.329335	1608.96618	0.51245	0.00027535	0.066597	3.5785E-05	0.57904	0.00031114	537.3294183176222	96.927	0.2719	96.922	96.71	96.982	-0.0055466					37	26	2	0	0	0	0.33352	1	25923	25923		0.08335	0.08335	1	266250			40866	9012	23701	23702	49603	49603					0.18605228650517347
RVLWRRRQRQR	11	Unmodified	_RVLWRRRQRQR_					0	0	0		ENST00000263754.4_1_3:20081618-20081714:+|nuORF	ENST00000263754.4_1_3:20081618-20081714:+|nuORF	ENST00000263754.4_1_3:20081618-20081714:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.99560546875	3	537.329335	1608.96618	0.52977	0.00028466	0.53698	0.00028854	1.0668	0.0005732	537.3295196135335	96.27	0.23524	96.266	96.19	96.425	-0.0038147					33	22	2	0	0	0	0.33352	1	25724	25724		0.08335	0.08335	1	232700			40867	9012	23701	23702	49604	49604					0.18605228650517347
RVLWRRRQRQR	11	Unmodified	_RVLWRRRQRQR_					0	0	0		ENST00000263754.4_1_3:20081618-20081714:+|nuORF	ENST00000263754.4_1_3:20081618-20081714:+|nuORF	ENST00000263754.4_1_3:20081618-20081714:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	537.329335	1608.96618	0.2277	0.00012235	-0.096028	-5.1599E-05	0.13168	7.0753E-05	537.3292197864405	96.35	0.22743	96.35	96.19	96.417	0	0.042256	-0.00070101	NaN	0.08335	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116590			40868	9012	23701	23702							0.18605228650517347
RVMAPRALL	9	Oxidation (M)	_RVM(Oxidation (M))APRALL_		RVM(1)APRALL		RVM(85)APRALL	0	0	1		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8125	2	521.813136	1041.61172	-0.86491	-0.00045132	-0.26594	-0.00013877	-1.1309	-0.00059009	521.8130419908874	34.724	1.3832	34.724	34.164	35.547	0					102	49	3	0	0	0	0.006189	3	6935	6842;6890;6935		85.272	32.579	1	7082100			40869	8234	23702	23703	49605;49606;49607	49607		891			0.0925778845332843
RVMAPRALL	9	Oxidation (M)	_RVM(Oxidation (M))APRALL_		RVM(1)APRALL		RVM(85)APRALL	0	0	1		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.81201171875	2	521.813136	1041.61172	-1.084	-0.00056566	-0.29661	-0.00015477	-1.3806	-0.00072043	521.813043542235	34.652	1.2649	34.727	34.326	35.59	0.075306					83	45	2	0	0	0	0.006189	3	6848	6807;6848;6899		85.272	48.806	1	7477600			40870	8234	23702	23703	49608;49609;49610	49609		891			0.0925778845332843
RVMAPRALL	9	Oxidation (M)	_RVM(Oxidation (M))APRALL_		RVM(1)APRALL		RVM(85)APRALL	0	0	1		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.812255859375	2	521.813136	1041.61172	-0.30141	-0.00015728	-1.0834	-0.00056535	-1.3848	-0.00072263	521.8126163782737	34.617	1.3274	34.695	34.308	35.636	0.077377					104	47	3	0	0	0	0.006189	3	6839	6795;6839;6888		85.272	50.87	1	7162700			40871	8234	23702	23703	49611;49612;49613	49612		891			0.0925778845332843
RVMIFSVGK	9	Oxidation (M)	_RVM(Oxidation (M))IFSVGK_		RVM(1)IFSVGK		RVM(110)IFSVGK	0	0	1		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7999267578125	2	526.799694	1051.58484	0.49146	0.0002589	0.082533	4.3478E-05	0.57399	0.00030238	526.7996899669232	35.588	0.79203	35.588	35.17	35.962	0					98	28	4	0	0	0	0.0023895	4	7127	7078;7127;7170;7223		107.1	67.142	1	5204400			40872	4110	23703	23704	49614;49615;49616;49617	49615		522			0.06110679842163336
RVMIFSVGK	9	Oxidation (M)	_RVM(Oxidation (M))IFSVGK_		RVM(1)IFSVGK		RVM(110)IFSVGK	0	0	1		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7998657226562	2	526.799694	1051.58484	0.38919	0.00020502	0.27678	0.00014581	0.66597	0.00035083	526.7997854828496	35.518	0.79599	35.6	35.158	35.954	0.082355					96	28	4	0	0	0	0.0023895	4	7099	7054;7099;7143;7194		107.1	64.63	1	4926300			40873	4110	23703	23704	49618;49619;49620;49621	49619		522			0.06110679842163336
RVMIFSVGK	9	Oxidation (M)	_RVM(Oxidation (M))IFSVGK_		RVM(1)IFSVGK		RVM(120)IFSVGK	0	0	1		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7997436523438	2	526.799694	1051.58484	0.14717	7.753E-05	0.61769	0.0003254	0.76487	0.00040293	526.7999484413407	35.482	0.86153	35.568	35.069	35.931	0.08625					97	30	4	0	0	0	0.0013924	4	7131	7042;7088;7131;7176		117.76	77.803	1	5254400			40874	4110	23703	23704	49622;49623;49624;49625	49624		522			0.06110679842163336
RVMQERYKSMT	11	Unmodified	_RVMQERYKSMT_					0	0	0			REV__ENST00000551907.1_1_12:49783458-49783719:+|nuORF	REV__ENST00000551907.1_1_12:49783458-49783719:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.1796875	3	476.907723	1427.70134	0.08406	4.0089E-05	-0.27835	-0.00013275	-0.19429	-9.2657E-05	476.9073961089164	19.164	0.50225	19.048	18.838	19.341	-0.11592					35	17	3	0	0	0	0.33334	1	2106	2106		1.2148	0.80657	1	113090	+		40875	22212	23704	23705	49626	49626					0.004596302797381213
RVMVTPLRRPP	11	Unmodified	_RVMVTPLRRPP_					0	0	0			REV__ENST00000471892.6_1_5:137503584-137506561:-|nuORF	REV__ENST00000471892.6_1_5:137503584-137506561:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.76617431640625	3	441.267691	1320.78124	-0.22533	-9.9431E-05	-0.61709	-0.0002723	-0.84242	-0.00037173	441.2677212437251	13.176	0.81138	13.077	12.578	13.389	-0.099291					38	27	4	0	0	0	0.33348	1	313	313		0.40827	0.26837	1	108910	+		40876	13130	23705	23706	49627	49627					0.13368484735929087
RVNGGRPVLR	10	Unmodified	_RVNGGRPVLR_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3429565429688	2	562.343981	1122.67341	0.20628	0.000116	-0.76416	-0.00042972	-0.55788	-0.00031372	562.3435873199479	80.295	3.1196	80.36	79.444	82.564	0.065094					520	132	5	0	0	0	0.39935	1	20679	20679		3.5965	0	1	13068000			40877	4464	23706	23707	49628	49628					0.11697856196815337
RVNHKDPHVA	10	Unmodified	_RVNHKDPHVA_					0	0	0		nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM	nc|ENSG00000136738|Q92783-2|STAM	nc|ENSG00000136738|Q92783-2|STAM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8341674804688	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.257	1	81.257	80.757	81.757	0								0	0	0	0.37157	1	21158	21158		5.7319	1.203	1				40878	3993	23707	23708	49629	49629					0.042092730632248276
RVNHKDPHVA	10	Unmodified	_RVNHKDPHVA_					0	0	0		nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM	nc|ENSG00000136738|Q92783-2|STAM	nc|ENSG00000136738|Q92783-2|STAM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8338623046875	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.136	1	83.136	82.636	83.636	0								0	0	0	0.36441	1	21736	21736		8.7454	1.6437	1				40879	3993	23707	23708	49630	49630					0.042092730632248276
RVNHKDPHVA	10	Unmodified	_RVNHKDPHVA_					0	0	0		nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM	nc|ENSG00000136738|Q92783-2|STAM	nc|ENSG00000136738|Q92783-2|STAM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8341674804688	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.2	1	81.268	80.768	81.768	0.067848								0	0	0	0.37157	1	21131	21131		5.7319	0	1				40880	3993	23707	23708	49631	49631					0.042092730632248276
RVNHKDPHVA	10	Unmodified	_RVNHKDPHVA_					0	0	0		nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM	nc|ENSG00000136738|Q92783-2|STAM	nc|ENSG00000136738|Q92783-2|STAM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8345336914062	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.034	1	84.017	83.517	84.517	-0.016823								0	0	0	0.37157	1	21998	21998		5.7319	0.50118	1				40881	3993	23707	23708	49632	49632					0.042092730632248276
RVNNLKKK	8	Unmodified	_RVNNLKKK_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.32415771484375	2	500.324725	998.634898	0.081188	4.062E-05	-1.7043	-0.00085273	-1.6232	-0.00081211	500.3232775375872	12.28	0.38266	12.184	12.053	12.436	-0.096607					21	13	3	0	0	0	0.45169	1	90	90		5.2307	0	1	43557			40882	5650	23708	23709	49633	49633					0.1355255056231499
RVNNNRGNSL	10	Unmodified	_RVNNNRGNSL_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3026733398438	2	572.30251	1142.59047	-0.095249	-5.4511E-05	0.087067	4.9828E-05	-0.0081826	-4.6829E-06	572.3026730360237	13.509	0.50728	13.509	13.365	13.872	0					41	17	4	0	0	0	0.16839	1	444	444		36.506	25.682	1	285200			40883	4620	23709	23710	49634	49634					0.024874946781892504
RVNNNRGNSL	10	Unmodified	_RVNNNRGNSL_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.302490234375	2	572.30251	1142.59047	-0.0094885	-5.4303E-06	0.033952	1.9431E-05	0.024464	1.4001E-05	572.3025633263435	13.576	0.51596	13.477	13.306	13.822	-0.099291					36	18	3	0	0	0	0.3001	1	465	465		20.415	11.067	1	314380			40884	4620	23709	23710	49635	49635					0.024874946781892504
RVNNNRGNSL	10	Unmodified	_RVNNNRGNSL_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3025512695312	2	572.30251	1142.59047	-0.13143	-7.5219E-05	0.23246	0.00013304	0.10103	5.7821E-05	572.3027118055015	13.606	0.44165	13.538	13.388	13.829	-0.067496					36	15	3	0	0	0	0.22295	1	467	467		29.841	15.002	1	251920			40885	4620	23709	23710	49636	49636					0.024874946781892504
RVNPKTIGK	9	Unmodified	_RVNPKTIGK_					0	0	0		ENSG00000124875|ENST00000226317|CXCL6	ENSG00000124875|ENST00000226317|CXCL6	ENSG00000124875|ENST00000226317|CXCL6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.8161926269531	2	506.816733	1011.61891	-0.069713	-3.5332E-05	0.38619	0.00019573	0.31647	0.00016039	506.81688034166484	13.714	0.47316	13.648	13.444	13.917	-0.066068					20	16	2	0	0	0	0.30459	1	520	520		8.1555	1.4324	1	57246			40886	3187	23710	23711	49637	49637					0.11356844325428028
RVNRVDTTLLK	11	Unmodified	_RVNRVDTTLLK_					0	0	0		ENST00000448353.5_3_7:23643872-23650838:+|nuORF	ENST00000448353.5_3_7:23643872-23650838:+|nuORF	ENST00000448353.5_3_7:23643872-23650838:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.9330139160156	3	438.933254	1313.77793	-0.22063	-9.6844E-05	-0.27374	-0.00012015	-0.49438	-0.000217	438.9331383146368	27.755	0.70508	27.755	27.502	28.207	0					64	24	4	0	0	0	0.26738	1	4746	4746		25.155	10.317	1	359650			40887	10615	23711	23712	49638	49638					0.13359513162890835
RVNRVDTTLLK	11	Unmodified	_RVNRVDTTLLK_					0	0	0		ENST00000448353.5_3_7:23643872-23650838:+|nuORF	ENST00000448353.5_3_7:23643872-23650838:+|nuORF	ENST00000448353.5_3_7:23643872-23650838:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.932861328125	3	438.933254	1313.77793	-0.26347	-0.00011565	-0.044467	-1.9518E-05	-0.30794	-0.00013517	438.93310020937577	27.728	0.68246	27.707	27.493	28.176	-0.021412					51	23	3	0	0	0	0.3871	1	4796	4796		12.929	4.4844	1	359500			40888	10615	23711	23712	49639	49639					0.13359513162890835
RVNRVDTTLLK	11	Unmodified	_RVNRVDTTLLK_					0	0	0		ENST00000448353.5_3_7:23643872-23650838:+|nuORF	ENST00000448353.5_3_7:23643872-23650838:+|nuORF	ENST00000448353.5_3_7:23643872-23650838:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	438.933254	1313.77793	-0.30224	-0.00013266	-0.21965	-9.6411E-05	-0.52189	-0.00022908	438.933161550592	27.689	0.56659	27.678	27.499	28.066	-0.011562	-0.035412	-5.8568E-05	NaN	25.155	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412840			40889	10615	23711	23712							0.13359513162890835
RVNVTGIYR	9	Unmodified	_RVNVTGIYR_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3110961914062	2	539.311815	1076.60908	0.6366	0.00034333	-0.38581	-0.00020807	0.2508	0.00013526	539.3115411734123	29.728	0.33701	29.728	29.58	29.917	0					25	11	3	0	0	0	0.17263	1	5344	5344		38.615	18.161	1	192370			40890	1910	23712	23713	49640	49640					0.07383656320052978
RVNVTGIYR	9	Unmodified	_RVNVTGIYR_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	539.311815	1076.60908	0.29079	0.00015683	-0.21354	-0.00011516	0.07725	4.1662E-05	539.3114921734099	29.696	0.34542	29.709	29.564	29.91	0.013475	-0.017594	9.7003E-05	NaN	38.615	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180470			40891	1910	23712	23713							0.07383656320052978
RVPIAKILL	9	Unmodified	_RVPIAKILL_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2806091308594	2	511.85787	1021.70119	0.62651	0.00032068	0.23551	0.00012055	0.86202	0.00044123	511.8579409323254	50.995	0.66885	50.995	50.713	51.382	0					52	24	3	0	0	0	0.25202	1	11886	11886		10.824	2.2306	1	403500			40892	406	23713	23714	49641	49641					0.1912036640436554
RVPIAKILL	9	Unmodified	_RVPIAKILL_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2806091308594	2	511.85787	1021.70119	0.47339	0.00024231	0.37575	0.00019233	0.84915	0.00043464	511.8579277665853	51.04	0.69909	51.05	50.729	51.428	0.0095673					62	26	3	0	0	0	0.24688	1	11889	11889		6.2058	0	1	508460			40893	406	23713	23714	49642	49642					0.1912036640436554
RVPLDPLIGK	10	Unmodified	_RVPLDPLIGK_					0	0	0		nc|ENSG00000103274|P53384-2|NUBP1;ENSG00000103274|ENST00000283027|NUBP1	nc|ENSG00000103274|P53384-2|NUBP1	nc|ENSG00000103274|P53384-2|NUBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2535400390625	2	554.347866	1106.68118	0.4169	0.00023111	-0.15644	-8.672E-05	0.26046	0.00014439	554.3477966080117	44.574	0.75704	44.649	44.285	45.042	0.075047					58	27	3	0	0	0	0.31538	1	9937	9937		12.873	2.0487	1	781740			40894	1826	23714	23715	49643	49643					0.13210570673754773
RVPLFLYFLQ	10	Unmodified	_RVPLFLYFLQ_					0	0	0			REV__ENST00000538204.5_1_X:131506923-131507088:-|nuORF	REV__ENST00000538204.5_1_X:131506923-131507088:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	648.3804931640625	2	648.379166	1294.74378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.085	1	67.163	66.663	67.663	0.078041								0	0	0	0.37664	1	16818	16818		3.5965	0	1		+		40895	22099	23715	23716	49644	49644					0.10819716741934826
RVPTKHQRR	9	Unmodified	_RVPTKHQRR_					0	0	0			REV__ENSG00000124143|ENST00000373345|ARHGAP40	REV__ENSG00000124143|ENST00000373345|ARHGAP40	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.343505859375	2	589.35488	1176.69521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.461	1	91.461	90.961	91.961	0								0	0	0	0.2575	1	24288	24288		3.9444	0.66309	1		+		40896	15210	23716	23717	49645	49645					0.11392660945398347
RVPTKHQRR	9	Unmodified	_RVPTKHQRR_					0	0	0			REV__ENSG00000124143|ENST00000373345|ARHGAP40	REV__ENSG00000124143|ENST00000373345|ARHGAP40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.342529296875	2	589.35488	1176.69521	0.34675	0.00020436	-0.56027	-0.0003302	-0.21352	-0.00012584	589.3534229141327	91.753	0.10003	91.844	91.808	91.908	0.090675					7	5	2	0	0	0	0.33276	1	24384	24384		3.9444	0	1	57743	+		40897	15210	23716	23717	49646	49646					0.11392660945398347
RVPTKHQRR	9	Unmodified	_RVPTKHQRR_					0	0	0			REV__ENSG00000124143|ENST00000373345|ARHGAP40	REV__ENSG00000124143|ENST00000373345|ARHGAP40	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3431396484375	2	589.35488	1176.69521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.576	1	95.572	95.072	96.072	-0.0038147								0	0	0	0.2575	1	25534	25534		3.9444	0.3479	1		+		40898	15210	23716	23717	49647	49647					0.11392660945398347
RVPTPLQQPHL	11	Unmodified	_RVPTPLQQPHL_					0	0	0		NCOA6|p.V1638Kfs*30|1|0.04|ENSG00000198646|chr20:34741344-34741345|-/TT|frameshift_variant;ENSG00000198646|ENST00000359003|NCOA6	NCOA6|p.V1638Kfs*30|1|0.04|ENSG00000198646|chr20:34741344-34741345|-/TT|frameshift_variant	NCOA6|p.V1638Kfs*30|1|0.04|ENSG00000198646|chr20:34741344-34741345|-/TT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.2505187988281	3	429.250695	1284.73025	0.038774	1.6644E-05	-0.35957	-0.00015435	-0.32079	-0.0001377	429.2509589343227	50.166	1.7557	50.166	49.701	51.456	0					221	64	6	0	0	0	0.36722	1	11737	11737		15.538	1.3677	1	33589000			40899	8098	23717	23718	49648	49648					0.09927858962714708
RVPTPLQQPHL	11	Unmodified	_RVPTPLQQPHL_					0	0	0		NCOA6|p.V1638Kfs*30|1|0.04|ENSG00000198646|chr20:34741344-34741345|-/TT|frameshift_variant;ENSG00000198646|ENST00000359003|NCOA6	NCOA6|p.V1638Kfs*30|1|0.04|ENSG00000198646|chr20:34741344-34741345|-/TT|frameshift_variant	NCOA6|p.V1638Kfs*30|1|0.04|ENSG00000198646|chr20:34741344-34741345|-/TT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.2506103515625	3	429.250695	1284.73025	0.35376	0.00015185	-0.64564	-0.00027714	-0.29187	-0.00012529	429.2508661638446	50.137	1.7778	50.182	49.749	51.526	0.044891					219	66	6	0	0	0	0.37255	1	11723	11723		14.838	0.62763	1	31897000			40900	8098	23717	23718	49649	49649					0.09927858962714708
RVPTPLQQPHL	11	Unmodified	_RVPTPLQQPHL_					0	0	0		NCOA6|p.V1638Kfs*30|1|0.04|ENSG00000198646|chr20:34741344-34741345|-/TT|frameshift_variant;ENSG00000198646|ENST00000359003|NCOA6	NCOA6|p.V1638Kfs*30|1|0.04|ENSG00000198646|chr20:34741344-34741345|-/TT|frameshift_variant	NCOA6|p.V1638Kfs*30|1|0.04|ENSG00000198646|chr20:34741344-34741345|-/TT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.2506103515625	3	429.250695	1284.73025	0.39706	0.00017044	-0.72583	-0.00031156	-0.32877	-0.00014112	429.2508390552716	50.147	1.8253	50.168	49.746	51.572	0.020695					236	68	6	0	0	0	0.37255	1	11731	11731		14.838	1.9092	1	32127000			40901	8098	23717	23718	49650	49650					0.09927858962714708
RVPVEKPVYK	10	Unmodified	_RVPVEKPVYK_					0	0	0		nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.23858642578125	3	405.580041	1213.71829	0.061167	2.4808E-05	-2.3153	-0.00093902	-2.2541	-0.00091421	405.9134462581039	20.966	0.25737	20.966	20.742	21	0					13	8	2	0	0	0	0.31329	1	2671	2671		17.049	13.976	1	282210			40902	7452	23718	23719	49651	49651					0.11998242219510757
RVPVEKPVYK	10	Unmodified	_RVPVEKPVYK_					0	0	0		nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.23828125	3	405.580041	1213.71829	-0.023819	-9.6604E-06	-1.3544	-0.00054932	-1.3782	-0.00055898	405.9138424167178	21.256	0.45409	21.256	21.199	21.654	0					26	15	2	0	0	0	0.31746	1	2798	2798		10.315	5.7864	1	162900			40903	7452	23718	23719	49652	49652					0.11998242219510757
RVPVEKPVYK	10	Unmodified	_RVPVEKPVYK_					0	0	0		nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.238525390625	3	405.580041	1213.71829	0.16773	6.8029E-05	-1.2643	-0.00051277	-1.0966	-0.00044474	405.9136739081048	21.107	0.16953	20.997	20.864	21.034	-0.11003					8	5	2	0	0	0	0.31149	1	2735	2735		15.538	8.9081	1	189730			40904	7452	23718	23719	49653	49653					0.11998242219510757
RVPVEKPVYK	10	Unmodified	_RVPVEKPVYK_					0	0	0		nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.238525390625	3	405.580041	1213.71829	-0.016003	-6.4905E-06	-2.4939	-0.0010115	-2.5099	-0.001018	405.91328195745405	21.286	0.56754	21.235	21.12	21.687	-0.051161					29	19	2	0	0	0	0.26767	1	2789	2789		35.08	21.561	1	218060			40905	7452	23718	23719	49654	49654					0.11998242219510757
RVPVWGEL	8	Unmodified	_RVPVWGEL_					0	0	0			REV__ENSG00000156232|ENST00000286760|WHAMM	REV__ENSG00000156232|ENST00000286760|WHAMM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2716064453125	2	478.271627	954.528701	0.26393	0.00012623	0.00044896	2.1472E-07	0.26438	0.00012645	478.2715776799785	41.006	1.1445	41.096	40.367	41.511	0.090248					123	42	4	0	0	0	0.32038	1	8714	8714		28.487	5.3384	1	2514100	+		40906	16737	23719	23720	49655	49655					0.049617949970070185
RVPVWGEL	8	Unmodified	_RVPVWGEL_					0	0	0			REV__ENSG00000156232|ENST00000286760|WHAMM	REV__ENSG00000156232|ENST00000286760|WHAMM	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	478.271627	954.528701	0.11004	5.2631E-05	0.16556	7.9181E-05	0.2756	0.00013181	478.27166413476317	40.938	1.1921	41.035	40.313	41.505	0.096622	-0.030619	0.0001011	NaN	28.487	129	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2659800	+		40907	16737	23719	23720							0.049617949970070185
RVQDYIQSK	9	Unmodified	_RVQDYIQSK_					0	0	0		ENSG00000123836|ENST00000367080|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000123836|O60825-2|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.8063354492188	2	568.806562	1135.59857	0.17743	0.00010092	-0.27026	-0.00015373	-0.092833	-5.2804E-05	568.8065275205606	24.274	0.64413	24.274	24.029	24.673	0					37	21	2	0	0	0	0.19897	2	3757	3699;3757		23.801	11.626	1	144640			40908	3123	23720	23721	49656;49657	49657					0.03619628874935188
RVQDYIQSK	9	Unmodified	_RVQDYIQSK_					0	0	0		ENSG00000123836|ENST00000367080|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000123836|O60825-2|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8068237304688	2	568.806562	1135.59857	0.37846	0.00021527	-0.60808	-0.00034588	-0.22962	-0.00013061	568.8063615571856	24.51	0.58391	24.437	24.179	24.763	-0.072559					36	19	3	0	0	0	0.24133	1	3770	3770		20.581	20.581	1	141460			40909	3123	23720	23721	49658	49658					0.03619628874935188
RVQDYIQSK	9	Unmodified	_RVQDYIQSK_					0	0	0		ENSG00000123836|ENST00000367080|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000123836|O60825-2|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	ENSG00000123836|ENST00000367080|PFKFB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.8065185546875	2	568.806562	1135.59857	0.1011	5.7509E-05	-0.11567	-6.5793E-05	-0.014565	-8.2845E-06	568.8065418811761	24.468	0.66049	24.429	24.222	24.883	-0.038927					38	22	3	0	0	0	0.1426	1	3766	3766		32.037	10.447	1	175720			40910	3123	23720	23721	49659	49659					0.03619628874935188
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(110)VK	0	0	1		ENST00000498665.1_1_2:70527944-70529143:-|nuORF;ENST00000460307.1_1_2:70528513-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.3375854492188	2	646.337369	1290.66019	0.30435	0.00019671	-0.058641	-3.7902E-05	0.24571	0.00015881	646.3375212703226	22.302	0.54978	22.302	22.045	22.594	0					72	18	5	0	0	0	2.0953E-05	3	3109	3064;3109;3155		113.99	84.554	1	3484400			40911	572	23721	23722	49660;49661;49662	49661		63			0.026481925119014704
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(87)VK	0	0	1		ENST00000498665.1_1_2:70527944-70529143:-|nuORF;ENST00000460307.1_1_2:70528513-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.22723388671875	3	431.227338	1290.66019	-0.21647	-9.3349E-05	-0.46006	-0.00019839	-0.67653	-0.00029174	431.22745328105856	22.296	0.77708	22.296	21.845	22.622	0					87	27	5	0	0	0	0.0017099	2	3088	3088;3139		87.214	73.044	1	4052900			40912	572	23721	23722	49663;49664	49663		63			0.026481925119014704
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(120)VK	0	0	1		ENST00000498665.1_1_2:70527944-70529143:-|nuORF;ENST00000460307.1_1_2:70528513-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.22772216796875	3	431.227338	1290.66019	-0.31965	-0.00013784	-0.1194	-5.149E-05	-0.43905	-0.00018933	431.22769367885246	22.868	1.7775	22.868	22.563	24.34	0					150	61	5	0	0	0	1.0277E-05	3	3274	3226;3274;3318		124.04	101.27	1	4557300			40913	572	23721	23722	49665;49666;49667	49666		63			0.026481925119014704
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(140)VK	0	0	1		ENST00000498665.1_1_2:70527944-70529143:-|nuORF;ENST00000460307.1_1_2:70528513-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.3377685546875	2	646.337369	1290.66019	0.20192	0.00013051	-0.084906	-5.4878E-05	0.11702	7.5634E-05	646.3375258055177	22.848	1.3241	22.848	22.563	23.887	0					147	45	5	0	0	0	1.0336E-08	3	3250	3250;3291;3334		143.22	102.49	1	3927400			40914	572	23721	23722	49668;49669;49670	49668		63			0.026481925119014704
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(99)VK	0	0	1		ENST00000498665.1_1_2:70527944-70529143:-|nuORF;ENST00000460307.1_1_2:70528513-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.22747802734375	3	431.227338	1290.66019	-0.15177	-6.5448E-05	-0.49941	-0.00021536	-0.65118	-0.00028081	431.2274232940169	22.376	0.86751	22.275	21.804	22.672	-0.10034					109	31	5	0	0	0	0.00086112	3	3144	3097;3144;3187		98.811	75.01	1	4150900			40915	572	23721	23722	49671;49672;49673	49672		63			0.026481925119014704
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(140)VK	0	0	1		ENST00000498665.1_1_2:70527944-70529143:-|nuORF;ENST00000460307.1_1_2:70528513-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.3377075195312	2	646.337369	1290.66019	0.28613	0.00018493	0.015299	9.8886E-06	0.30143	0.00019482	646.3375357381643	22.388	0.56913	22.288	22.017	22.586	-0.10034					87	20	5	0	0	0	9.9717E-09	2	3136	3136;3179		143.7	109.48	1	3070900			40916	572	23721	23722	49674;49675	49674		63			0.026481925119014704
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(99)VK	0	0	1		ENST00000498665.1_1_2:70527944-70529143:-|nuORF;ENST00000460307.1_1_2:70528513-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.2278137207031	3	431.227338	1290.66019	-0.26003	-0.00011213	-0.15885	-6.8501E-05	-0.41888	-0.00018063	431.22773225578106	22.971	1.8598	22.884	22.568	24.428	-0.087608					152	64	6	0	0	0	0.00086112	3	3314	3264;3314;3355		98.811	76.702	1	5312800			40917	572	23721	23722	49676;49677;49678	49677		63			0.026481925119014704
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(140)VK	0	0	1		ENST00000498665.1_1_2:70527944-70529143:-|nuORF;ENST00000460307.1_1_2:70528513-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.337646484375	2	646.337369	1290.66019	0.17912	0.00011577	-0.044178	-2.8554E-05	0.13494	8.7216E-05	646.3375290988305	22.97	1.2912	22.882	22.599	23.89	-0.08761					145	45	5	0	0	0	1.0336E-08	3	3322	3278;3322;3364		143.22	105.44	1	4835200			40918	572	23721	23722	49679;49680;49681	49680		63			0.026481925119014704
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(120)VK	0	0	1		ENST00000498665.1_1_2:70527944-70529143:-|nuORF;ENST00000460307.1_1_2:70528513-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.2274475097656	3	431.227338	1290.66019	-0.27768	-0.00011974	-0.32742	-0.00014119	-0.60511	-0.00026094	431.22748706169955	22.389	0.70225	22.344	21.977	22.679	-0.044867					97	23	5	0	0	0	1.9515E-05	3	3151	3102;3151;3197		115.34	92.569	1	3854900			40919	572	23721	23722	49682;49683;49684	49683		63			0.026481925119014704
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(140)VK	0	0	1		ENST00000498665.1_1_2:70527944-70529143:-|nuORF;ENST00000460307.1_1_2:70528513-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	646.3377075195312	2	646.337369	1290.66019	0.15119	9.7717E-05	0.15496	0.00010016	0.30615	0.00019788	646.3376382517254	22.404	0.63657	22.359	22.042	22.679	-0.044867					89	21	5	0	0	0	1.2775E-08	2	3134	3134;3183		139.98	111.75	1	3131600			40920	572	23721	23722	49685;49686	49685		63			0.026481925119014704
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(120)VK	0	0	1		ENST00000498665.1_1_2:70527944-70529143:-|nuORF;ENST00000460307.1_1_2:70528513-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.22784423828125	3	431.227338	1290.66019	-0.14931	-6.4385E-05	-0.42423	-0.00018294	-0.57354	-0.00024733	431.2276670069135	23.019	1.5935	22.974	22.679	24.272	-0.044867					170	56	5	0	0	0	1.9515E-05	3	3317	3270;3317;3364		115.34	88.256	1	5881700			40921	572	23721	23722	49687;49688;49689	49688		63			0.026481925119014704
RVQEAVESMVK	11	Oxidation (M)	_RVQEAVESM(Oxidation (M))VK_		RVQEAVESM(1)VK		RVQEAVESM(130)VK	0	0	1		ENST00000498665.1_1_2:70527944-70529143:-|nuORF;ENST00000460307.1_1_2:70528513-70529143:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	ENST00000498665.1_1_2:70527944-70529143:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	646.3377075195312	2	646.337369	1290.66019	0.27916	0.00018043	-0.12354	-7.9847E-05	0.15562	0.00010058	646.3374701497055	23.011	1.3347	22.966	22.679	24.014	-0.044867					155	47	5	0	0	0	1.7397E-08	2	3286	3286;3333		133.85	99.633	1	5040900			40922	572	23721	23722	49690;49691	49690		63			0.026481925119014704
RVQEENARLK	10	Unmodified	_RVQEENARLK_					0	0	0		ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	ENSG00000154305|ENST00000344922|MIA3	ENSG00000154305|ENST00000344922|MIA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.2605895996094	3	414.901954	1241.68403	-0.34713	-0.00014403	0.030379	1.2604E-05	-0.31675	-0.00013142	414.90192366080754	14.057	0.37651	14.057	13.902	14.279	0					27	12	3	0	0	0	0.31658	1	626	626		12.228	8.3513	1	98698			40923	5120	23722	23723	49692	49692					0.07285794060612716
RVQEENARLK	10	Unmodified	_RVQEENARLK_					0	0	0		ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	ENSG00000154305|ENST00000344922|MIA3	ENSG00000154305|ENST00000344922|MIA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.2606506347656	3	414.901954	1241.68403	-0.051593	-2.1406E-05	-0.74451	-0.0003089	-0.79611	-0.00033031	414.9018439700117	14.176	0.58254	14.072	13.933	14.516	-0.10466					35	19	3	0	0	0	0.31516	1	640	640		14.838	5.8617	1	183670			40924	5120	23722	23723	49693	49693					0.07285794060612716
RVQEENARLK	10	Unmodified	_RVQEENARLK_					0	0	0		ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	ENSG00000154305|ENST00000344922|MIA3	ENSG00000154305|ENST00000344922|MIA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.2606201171875	3	414.901954	1241.68403	-0.11555	-4.7942E-05	0.18842	7.8177E-05	0.072874	3.0235E-05	414.90195271082325	14.152	0.31212	14.086	13.949	14.261	-0.066068					27	10	3	0	0	0	0.31516	1	640	640		14.838	8.2144	1	110750			40925	5120	23722	23723	49694	49694					0.07285794060612716
RVQEQLSSL	9	Unmodified	_RVQEQLSSL_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.294921875	2	530.293288	1058.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.1	1	117.08	116.58	117.58	-0.022781								0	0	0	0.25631	1	30320	30320		4.3292	0	1				40926	3498	23723	23724	49695	49695					0.045079399836367884
RVQEYLEVRK	10	Unmodified	_RVQEYLEVRK_					0	0	0		ENSG00000149346|ENST00000334534|SLX4IP	ENSG00000149346|ENST00000334534|SLX4IP	ENSG00000149346|ENST00000334534|SLX4IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.5459289550781	3	440.585854	1318.73573	0.03504	1.5438E-05	-0.17672	-7.7859E-05	-0.14168	-6.2421E-05	440.58569876920455	26.626	0.56652	26.587	26.342	26.909	-0.038671					40	19	3	0	0	0	0.3189	1	4424	4424		8.2864	1.663	1	118370			40927	4861	23724	23725	49696	49696					0.08911537754488563
RVQGFQVEY	9	Unmodified	_RVQGFQVEY_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.2880859375	2	563.288005	1124.56146	0.60097	0.00033852	-0.20332	-0.00011453	0.39765	0.00022399	563.2878906546925	45.655	0.73719	45.655	45.266	46.003	0					69	26	3	0	0	0	0.001957	2	10218	10218;10267		110.55	70.603	1	1582900			40928	3143	23725	23726	49697;49698	49697					0.004159573291872221
RVQGFQVEY	9	Unmodified	_RVQGFQVEY_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.2880249023438	2	563.288005	1124.56146	0.60713	0.00034199	-0.20281	-0.00011424	0.40432	0.00022775	563.2878525170385	45.397	0.98059	45.457	44.97	45.951	0.059834					90	34	5	0	0	0	0.0024096	2	10125	10125;10172		106.94	65.101	1	1555200			40929	3143	23725	23726	49699;49700	49699					0.004159573291872221
RVQGFQVEY	9	Unmodified	_RVQGFQVEY_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.2880249023438	2	563.288005	1124.56146	0.37764	0.00021272	-0.058408	-3.29E-05	0.31923	0.00017982	563.2878999028683	45.363	0.92178	45.428	44.978	45.9	0.065048					75	33	3	0	0	0	0.0028542	2	10159	10111;10159		103.42	55.671	1	1610800			40930	3143	23725	23726	49701;49702	49702					0.004159573291872221
RVQRRRAA	8	Unmodified	_RVQRRRAA_					0	0	0		ENST00000370318.5_2_6:74161260-74161311:-|nuORF	ENST00000370318.5_2_6:74161260-74161311:-|nuORF	ENST00000370318.5_2_6:74161260-74161311:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.75927734375	2	506.81539	1011.61623	0.27978	0.0001418	2.5063	0.0012702	2.7861	0.001412	506.8162643626622	28.954	0.79501	28.954	28.725	29.52	0.00033951					36	27	3	0	0	0	0.34247	1	5148	5148		8.5933	0.68312	1	139430			40931	9797	23726	23727	49703	49703					0.1108843371112016
RVQRRRAA	8	Unmodified	_RVQRRRAA_					0	0	0		ENST00000370318.5_2_6:74161260-74161311:-|nuORF	ENST00000370318.5_2_6:74161260-74161311:-|nuORF	ENST00000370318.5_2_6:74161260-74161311:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	506.81539	1011.61623	0.40082	0.00020314	3.1974	0.0016205	3.5983	0.0018237	506.81722943576193	28.989	0.4333	28.989	28.76	29.193	0	0.0071596	0.00038408	NaN	8.5933	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120390			40932	9797	23726	23727							0.1108843371112016
RVQVVGTYR	9	Unmodified	_RVQVVGTYR_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3116455078125	2	539.311815	1076.60908	0.32384	0.00017465	0.19586	0.00010563	0.5197	0.00028028	539.311815441899	23.675	0.37454	23.675	23.513	23.887	0					28	12	3	0	0	0	0.26278	2	3530	3504;3530		14.405	5.66	1	104530			40933	2412	23727	23728	49704;49705	49705					0.07383656320052978
RVQVVGTYR	9	Unmodified	_RVQVVGTYR_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.312744140625	2	539.311815	1076.60908	0.35681	0.00019243	-0.0086024	-4.6394E-06	0.3482	0.00018779	539.3117946068595	23.791	0.40444	23.718	23.53	23.935	-0.072559					25	13	2	0	0	0	0.22935	1	3555	3555		19.362	6.3195	1	100150			40934	2412	23727	23728	49706	49706					0.07383656320052978
RVQVVGTYR	9	Unmodified	_RVQVVGTYR_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.3119506835938	2	539.311815	1076.60908	0.61146	0.00032977	-0.54527	-0.00029407	0.066186	3.5695E-05	539.3114516757637	23.81	0.45914	23.771	23.506	23.965	-0.038927					23	15	2	0	0	0	0.24833	1	3567	3567		16.566	6.4919	1	107720			40935	2412	23727	23728	49707	49707					0.07383656320052978
RVRDINEAF	9	Unmodified	_RVRDINEAF_					0	0	0		nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;nc|ENSG00000071564|P15923-3|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-2|TCF3;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000071564|P15923-3|TCF3;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-2|TCF12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.76611328125	2	560.298904	1118.58326	0.22434	0.0001257	0.98869	0.00055396	1.213	0.00067966	560.2999902011084	31.405	0.44192	31.446	31.178	31.62	0.040991					34	15	4	0	0	0	0.17696	1	5855	5855		29.841	8.3036	1	1454400			40936	4288;960;7888;12726	23728	23729	49708	49708					0.028707620777595366
RVRDIVPTL	9	Unmodified	_RVRDIVPTL_					0	0	0		ENST00000533086.5_1_19:15228578-15234387:-|nuORF;ENSG00000105135|ENST00000263383|ILVBL	ENST00000533086.5_1_19:15228578-15234387:-|nuORF	ENST00000533086.5_1_19:15228578-15234387:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7721557617188	2	534.82984	1067.64513	0.44122	0.00023598	-0.33594	-0.00017967	0.10528	5.6308E-05	534.8297295944259	43.847	0.83202	43.847	43.233	44.065	0					79	30	4	0	0	0	0.22061	1	9670	9670		24.021	9.1823	1	557140			40937	1949	23729	23730	49709	49709					0.1140111349691324
RVRDIVPTL	9	Unmodified	_RVRDIVPTL_					0	0	0		ENST00000533086.5_1_19:15228578-15234387:-|nuORF;ENSG00000105135|ENST00000263383|ILVBL	ENST00000533086.5_1_19:15228578-15234387:-|nuORF	ENST00000533086.5_1_19:15228578-15234387:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7718505859375	2	534.82984	1067.64513	0.53138	0.0002842	-0.3114	-0.00016655	0.21998	0.00011765	534.8297461375324	43.659	0.75344	43.743	43.19	43.944	0.083996					79	27	4	0	0	0	0.19686	1	9607	9607		24.991	10.153	1	552010			40938	1949	23729	23730	49710	49710					0.1140111349691324
RVRDRAERA	9	Unmodified	_RVRDRAERA_					0	0	0			REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF	REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.822509765625	2	564.82087	1127.62719	0.2471	0.00013957	0.74269	0.00041949	0.98978	0.00055905	564.8211007283917	80.441	2.0633	80.441	79.495	81.558	0					209	86	3	0	0	0	0.33508	1	20975	20975		3.5965	0	1	2302400	+		40939	21062	23730	23731	49711	49711					0.06847791294762828
RVRDRVKLTA	10	Unmodified	_RVRDRVKLTA_					0	0	0			REV__ENSG00000071242|ENST00000265678|RPS6KA2	REV__ENSG00000071242|ENST00000265678|RPS6KA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.3777465820312	2	607.37802	1212.74149	0.53718	0.00032627	-0.070042	-4.2542E-05	0.46714	0.00028373	607.3776123343443	89.21	0.80079	89.21	88.844	89.645	0					117	41	4	0	0	0	0.36368	2	23593	23593;23638		10.151	4.4187	1	1049300	+		40940	13743	23731	23732	49712;49713	49712					0.14362681056832116
RVRDRVKLTA	10	Unmodified	_RVRDRVKLTA_					0	0	0			REV__ENSG00000071242|ENST00000265678|RPS6KA2	REV__ENSG00000071242|ENST00000265678|RPS6KA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.3778686523438	2	607.37802	1212.74149	0.52891	0.00032125	0.30418	0.00018475	0.83309	0.000506	607.3776793331327	89.125	0.81831	89.216	88.83	89.648	0.090569					112	43	3	0	0	0	0.38027	1	23586	23586		7.1017	2.2047	1	714180	+		40941	13743	23731	23732	49714	49714					0.14362681056832116
RVRDRVKLTA	10	Unmodified	_RVRDRVKLTA_					0	0	0			REV__ENSG00000071242|ENST00000265678|RPS6KA2	REV__ENSG00000071242|ENST00000265678|RPS6KA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.3777465820312	2	607.37802	1212.74149	0.41035	0.00024923	0.54967	0.00033386	0.96002	0.00058309	607.3777190056928	89.1	2.029	89.099	87.936	89.965	-0.00080872					189	114	3	0	0	0	0.38027	2	23577	23577;23622		7.1017	0.89594	1	693120	+		40942	13743	23731	23732	49715;49716	49715					0.14362681056832116
RVREITENL	9	Unmodified	_RVREITENL_					0	0	0		ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.319580078125	2	565.319837	1128.62512	0.36443	0.00020602	-0.23423	-0.00013241	0.1302	7.3604E-05	565.3197037319394	30.152	0.75885	30.152	29.86	30.619	0					57	26	3	0	0	0	0.20626	2	5465	5465;5517		22.736	2.3217	1	688550			40943	3950	23732	23733	49717;49718	49717					0.06595317766277731
RVREITENL	9	Unmodified	_RVREITENL_					0	0	0		ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.319580078125	2	565.319837	1128.62512	0.44279	0.00025032	-0.51207	-0.00028948	-0.069273	-3.9161E-05	565.3195696804919	30.105	0.84781	30.133	29.845	30.693	0.027946					67	29	3	0	0	0	0.12279	2	5485	5439;5485		34.932	15.57	1	713820			40944	3950	23732	23733	49719;49720	49720					0.06595317766277731
RVREITENL	9	Unmodified	_RVREITENL_					0	0	0		ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.31982421875	2	565.319837	1128.62512	-0.039541	-2.2353E-05	-0.020516	-1.1598E-05	-0.060057	-3.3951E-05	565.3198220279628	30.128	0.69035	30.156	29.864	30.555	0.027159					55	23	3	0	0	0	0.22215	2	5458	5458;5511		20.415	1.1575	1	645850			40945	3950	23732	23733	49721;49722	49721					0.06595317766277731
RVREITENL	9	Unmodified	_RVREITENL_					0	0	0		ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	565.319837	1128.62512	0.36443	0.00020602	-0.23423	-0.00013241	0.1302	7.3604E-05	565.3197037319394	30.152	0.75885	30.152	29.86	30.619	0	0.0053872	2.4746E-05	NaN	34.932	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	688550			40946	3950	23732	23733							0.06595317766277731
RVREITENL	9	Unmodified	_RVREITENL_					0	0	0		ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	ENSG00000136167|ENST00000323076|LCP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	565.319837	1128.62512	-0.039541	-2.2353E-05	-0.020516	-1.1598E-05	-0.060057	-3.3951E-05	565.3198220279628	30.128	0.69035	30.156	29.864	30.555	0.027159	0.0087778	0.00026638	NaN	34.932	55	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	645850			40947	3950	23732	23733							0.06595317766277731
RVRGGRAARRG	11	Unmodified	_RVRGGRAARRG_					0	0	0			REV__ENST00000574549.5_1_16:3074049-3074236:+|nuORF	REV__ENST00000574549.5_1_16:3074049-3074236:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3703002929688	2	606.368853	1210.72315	0.70782	0.0004292	1.0246	0.00062127	1.7324	0.0010505	606.3696730431174	84.28	0.3063	84.28	84.163	84.47	0					51	11	5	0	0	0	0.3826	2	22122	22076;22122		17.113	8.7454	1	21499000	+		40948	22430	23733	23734	49723;49724	49724					0.12621983925487257
RVRGGRAARRG	11	Unmodified	_RVRGGRAARRG_					0	0	0			REV__ENST00000574549.5_1_16:3074049-3074236:+|nuORF	REV__ENST00000574549.5_1_16:3074049-3074236:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3704223632812	2	606.368853	1210.72315	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.621	1	86.705	86.205	87.205	0.084251								0	0	0	0.35543	1	22798	22798		8.7454	3.8484	1		+		40949	22430	23733	23734	49725	49725					0.12621983925487257
RVRGGRAARRG	11	Unmodified	_RVRGGRAARRG_					0	0	0			REV__ENST00000574549.5_1_16:3074049-3074236:+|nuORF	REV__ENST00000574549.5_1_16:3074049-3074236:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	606.368853	1210.72315	0.70782	0.0004292	1.0246	0.00062127	1.7324	0.0010505	606.3696730431174	84.28	0.3063	84.28	84.163	84.47	0	0.054109	-0.00029733	NaN	17.113	51	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21499000	+		40950	22430	23733	23734							0.12621983925487257
RVRGGRAARRG	11	Unmodified	_RVRGGRAARRG_					0	0	0			REV__ENST00000574549.5_1_16:3074049-3074236:+|nuORF	REV__ENST00000574549.5_1_16:3074049-3074236:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	606.368853	1210.72315	0.53641	0.00032526	1.2772	0.00077447	1.8136	0.0010997	606.369658517278	84.188	3.5492	84.171	83.11	86.659	-0.016823	-0.054109	9.0643E-06	NaN	17.113	548	144	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20889000	+		40951	22430	23733	23734							0.12621983925487257
RVRHTVHDF	9	Unmodified	_RVRHTVHDF_					0	0	0			REV__ENSG00000112893|ENST00000261483|MAN2A1	REV__ENSG00000112893|ENST00000261483|MAN2A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3565063476562	2	583.812513	1165.61047	0.33116	0.00019333	1.2381	0.00072279	1.5692	0.00091613	583.8132413199729	80.195	0.39867	80.168	79.977	80.376	-0.026825					21	13	2	0	0	0	0.25066	1	20860	20860		11.64	0	1	219490	+		40952	14791	23734	23735	49726	49726					0.03429290408803354
RVRLDRWWSRR	11	Unmodified	_RVRLDRWWSRR_					0	0	0			REV__ENST00000464988.1_1_3:50152885-50152945:+|nuORF	REV__ENST00000464988.1_1_3:50152885-50152945:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8143310546875	3	529.302675	1584.8862	0.19358	0.00010246	3.4476	0.0018248	3.6412	0.0019273	529.3035200767152	112.01	0.059891	111.99	111.95	112.01	-0.015617					9	6	2	0	0	0	0.33352	1	29134	29134		0.08335	0	1	60427	+		40953	21270	23735	23736	49727	49727					0.11714742256685895
RVRLTQARQ	9	Unmodified	_RVRLTQARQ_					0	0	0			REV__nc|ENSG00000116514|Q6ZMZ0-3|RNF19B	REV__nc|ENSG00000116514|Q6ZMZ0-3|RNF19B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3416748046875	2	564.341438	1126.66832	0.16768	9.4631E-05	0.082209	4.6394E-05	0.24989	0.00014102	564.3414979693108	16.304	0.41107	16.19	15.95	16.362	-0.11434					28	13	3	0	0	0	0.34923	1	1268	1268		1.4819	0	1	61981	+		40954	14924	23736	23737	49728	49728					0.11005552334222557
RVRNPTVQL	9	Unmodified	_RVRNPTVQL_					0	0	0		ENSG00000179044|ENST00000314586|EXOC3L1	ENSG00000179044|ENST00000314586|EXOC3L1	ENSG00000179044|ENST00000314586|EXOC3L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.8248901367188	2	541.825089	1081.63563	0.19982	0.00010827	-0.058885	-3.1905E-05	0.14093	7.6361E-05	541.8246961045265	28.254	0.59034	28.255	27.82	28.41	0.0004673					35	20	3	0	0	0	0.26612	1	4874	4874		13.906	3.8321	1	168720			40955	7099	23737	23738	49729	49729					0.0980734521137947
RVRQRERE	8	Unmodified	_RVRQRERE_					0	0	0			REV__ENSG00000187855|ENST00000342331|ASCL4	REV__ENSG00000187855|ENST00000342331|ASCL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8206787109375	2	564.82087	1127.62719	0.2471	0.00013957	0.74269	0.00041949	0.98978	0.00055905	564.8211007283917	80.441	2.0633	80.441	79.495	81.558	0					209	86	3	0	0	0	0.45431	4	20774	20774;20817;20868;20913		4.3292	4.3292	1	2302400	+		40956	18527	23738	23739	49730;49731;49732;49733	49730					0.06847791294762828
RVRQRERE	8	Unmodified	_RVRQRERE_					0	0	0			REV__ENSG00000187855|ENST00000342331|ASCL4	REV__ENSG00000187855|ENST00000342331|ASCL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.8206176757812	2	564.82087	1127.62719	0.22359	0.00012629	0.78999	0.0004462	1.0136	0.00057249	564.8211302096843	80.39	3.1163	80.455	79.422	82.538	0.065102					326	132	3	0	0	0	0.45431	4	20787	20787;20834;20884;20941		4.3292	4.3292	1	2016200	+		40957	18527	23738	23739	49734;49735;49736;49737	49734					0.06847791294762828
RVRQRERE	8	Unmodified	_RVRQRERE_					0	0	0			REV__ENSG00000187855|ENST00000342331|ASCL4	REV__ENSG00000187855|ENST00000342331|ASCL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.8206787109375	2	564.82087	1127.62719	0.27282	0.0001541	0.51851	0.00029287	0.79134	0.00044696	564.8209904792535	80.412	2.9878	80.385	79.523	82.511	-0.026825					328	118	4	0	0	0	0.45431	3	20775	20775;20827;20877		4.3292	4.3292	1	2120200	+		40958	18527	23738	23739	49738;49739;49740	49738					0.06847791294762828
RVRVSGQGL	9	Unmodified	_RVRVSGQGL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;ENST00000466325.1_1_X:153581267-153581814:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.290771484375	2	486.290882	970.567212	0.34986	0.00017013	-0.27418	-0.00013333	0.075679	3.6802E-05	486.2905639910711	20.66	1.3895	20.66	20.341	21.731	0					118	48	3	0	0	0	0.0041491	2	2567	2567;2616		93.166	47.145	1	2713800			40959	7913	23739	23740	49741;49742	49741					0.08075100631526766
RVRVSGQGL	9	Unmodified	_RVRVSGQGL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;ENST00000466325.1_1_X:153581267-153581814:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.290771484375	2	486.290882	970.567212	0.55146	0.00026817	-0.52384	-0.00025474	0.02762	1.3431E-05	486.2904587020215	20.858	1.4712	20.748	20.407	21.878	-0.11003					113	51	3	0	0	0	0.0079761	3	2682	2640;2682;2745		82.529	21.172	1	2944300			40960	7913	23739	23740	49743;49744;49745	49744					0.08075100631526766
RVRVSGQGL	9	Unmodified	_RVRVSGQGL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;ENST00000466325.1_1_X:153581267-153581814:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2907409667969	2	486.290882	970.567212	0.51383	0.00024987	-0.48194	-0.00023436	0.031885	1.5506E-05	486.29045794353937	20.748	1.2706	20.695	20.387	21.658	-0.052912					106	44	3	0	0	0	0.0028542	2	2596	2596;2645		103.42	51.151	1	2839000			40961	7913	23739	23740	49746;49747	49746					0.08075100631526766
RVRWPPLR	8	Unmodified	_RVRWPPLR_					0	0	0		ENST00000485102.1_1_X:48673225-48673405:+|nuORF	ENST00000485102.1_1_X:48673225-48673405:+|nuORF	ENST00000485102.1_1_X:48673225-48673405:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7799682617188	2	540.332885	1078.65122	0.27498	0.00014858	-1.3586	-0.00073411	-1.0836	-0.00058553	540.332078588351	17.628	0.27648	17.51	17.386	17.663	-0.11739					14	9	2	0	0	0	0.34437	1	1662	1662		0.69038	0	1	24407			40962	11087	23740	23741	49748	49748					0.11503676519077999
RVSAIFVGK	9	Unmodified	_RVSAIFVGK_					0	0	0		ENSG00000184986|ENST00000392519|TMEM121	ENSG00000184986|ENST00000392519|TMEM121	ENSG00000184986|ENST00000392519|TMEM121	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.8002624511719	2	488.800552	975.58655	0.1787	8.7347E-05	-0.40164	-0.00019632	-0.22295	-0.00010898	488.8003410944576	31.026	0.61331	31.026	30.781	31.394	0					35	21	2	0	0	0	0.15763	1	5745	5745		29.841	4.4413	1	264910			40963	7490	23741	23742	49749	49749					0.09778056922436917
RVSAIFVGK	9	Unmodified	_RVSAIFVGK_					0	0	0		ENSG00000184986|ENST00000392519|TMEM121	ENSG00000184986|ENST00000392519|TMEM121	ENSG00000184986|ENST00000392519|TMEM121	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2742004394531	2	488.800552	975.58655	0.10621	5.1914E-05	-0.097976	-4.7891E-05	0.0082312	4.0234E-06	488.8003283703714	30.997	0.49799	31.025	30.81	31.308	0.027946					39	17	3	0	0	0	0.24636	1	5793	5793		16.149	3.6176	1	192580			40964	7490	23741	23742	49750	49750					0.09778056922436917
RVSAIFVGK	9	Unmodified	_RVSAIFVGK_					0	0	0		ENSG00000184986|ENST00000392519|TMEM121	ENSG00000184986|ENST00000392519|TMEM121	ENSG00000184986|ENST00000392519|TMEM121	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.8004150390625	2	488.800552	975.58655	0.21114	0.0001032	-0.48417	-0.00023666	-0.27303	-0.00013346	488.8002717027011	30.966	0.48163	30.993	30.81	31.292	0.027157					37	17	3	0	0	0	0.086462	1	5723	5723		40.239	2.2652	1	224400			40965	7490	23741	23742	49751	49751					0.09778056922436917
RVSEFFMNAK	10	Oxidation (M)	_RVSEFFM(Oxidation (M))NAK_		RVSEFFM(1)NAK		RVSEFFM(41)NAK	0	0	1		nc|ENSG00000071243|Q9NXR8-2|ING3;nc|ENSG00000071243|Q9NXR8-3|ING3;ENSG00000071243|ENST00000315870|ING3	nc|ENSG00000071243|Q9NXR8-2|ING3	nc|ENSG00000071243|Q9NXR8-2|ING3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.8079223632812	2	622.808248	1243.60194	0.36889	0.00022975	-0.43811	-0.00027286	-0.069215	-4.3108E-05	622.8079699448137	31.943	0.9153	31.943	31.667	32.582	0					48	32	3	0	0	0	0.13068	1	6008	6008		41.347	26.942	1	766590			40966	954	23742	23743	49752	49752		117			-0.010114443427028164
RVSEFFMNAK	10	Oxidation (M)	_RVSEFFM(Oxidation (M))NAK_		RVSEFFM(1)NAK		RVSEFFM(55)NAK	0	0	1		nc|ENSG00000071243|Q9NXR8-2|ING3;nc|ENSG00000071243|Q9NXR8-3|ING3;ENSG00000071243|ENST00000315870|ING3	nc|ENSG00000071243|Q9NXR8-2|ING3	nc|ENSG00000071243|Q9NXR8-2|ING3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8084716796875	2	622.808248	1243.60194	0.22443	0.00013977	-0.37948	-0.00023634	-0.15506	-9.657E-05	622.8080317448404	31.837	0.89325	31.878	31.62	32.513	0.040991					40	31	2	0	0	0	0.067194	1	5996	5996		55.249	35.887	1	720950			40967	954	23742	23743	49753	49753		117			-0.010114443427028164
RVSELHLEV	9	Unmodified	_RVSELHLEV_					0	0	0		ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.8194580078125	2	541.303655	1080.59276	0.67148	0.00036347	0.50856	0.00027529	1.18	0.00063876	541.3037049677309	40.514	0.96401	40.514	40.161	41.125	0					79	34	3	0	0	0	0.09758	1	8648	8648		38.615	1.5401	1	1637000			40968	1555	23743	23744	49754	49754					0.055685303633026706
RVSELHLEV	9	Unmodified	_RVSELHLEV_					0	0	0		ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.8196411132812	2	541.303655	1080.59276	0.71791	0.00038861	0.22445	0.00012149	0.94235	0.0005101	541.3035971104005	40.25	0.87835	40.343	40.051	40.929	0.09267					81	31	4	0	0	0	0.09758	2	8532	8532;8580		38.615	1.5401	1	1586300			40969	1555	23743	23744	49755;49756	49755					0.055685303633026706
RVSELHLEV	9	Unmodified	_RVSELHLEV_					0	0	0		ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	ENSG00000100266|ENST00000263246|PACSIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.8195190429688	2	541.303655	1080.59276	0.69072	0.00037389	0.26687	0.00014446	0.95759	0.00051835	541.3037119181238	40.213	0.87409	40.313	40.038	40.912	0.099407					79	31	5	0	0	0	0.2141	1	8507	8507		21.59	1.0092	1	1576700			40970	1555	23743	23744	49757	49757					0.055685303633026706
RVSGPEVQYLR	11	Unmodified	_RVSGPEVQYLR_					0	0	0		ENST00000519412.1_1_8:82066532-82066574:+|nuORF	ENST00000519412.1_1_8:82066532-82066574:+|nuORF	ENST00000519412.1_1_8:82066532-82066574:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7796325683594	3	435.242088	1302.70443	-0.9176	-0.00039938	-1.27	-0.00055277	-2.1876	-0.00095215	435.24136559017546	35.221	0.5719	35.221	34.868	35.439	0					24	20	2	0	0	0	0.33169	1	7060	7060		6.2344	1.8282	1	131720			40971	11458	23744	23745	49758	49758					0.06518964720430631
RVSGPEVQYLR	11	Unmodified	_RVSGPEVQYLR_					0	0	0		ENST00000519412.1_1_8:82066532-82066574:+|nuORF	ENST00000519412.1_1_8:82066532-82066574:+|nuORF	ENST00000519412.1_1_8:82066532-82066574:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.779541015625	3	435.242088	1302.70443	-0.75944	-0.00033054	-1.0136	-0.00044115	-1.773	-0.00077169	435.2416181011387	35.123	0.57924	35.199	34.874	35.454	0.075306					22	20	2	0	0	0	0.32912	1	7036	7036		5.5233	1.1171	1	123240			40972	11458	23744	23745	49759	49759					0.06518964720430631
RVSGTSSIYK	10	Unmodified	_RVSGTSSIYK_					0	0	0		ENST00000334370.8_1_19:42830101-42830299:+|nuORF	ENST00000334370.8_1_19:42830101-42830299:+|nuORF	ENST00000334370.8_1_19:42830101-42830299:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3015747070312	2	549.301113	1096.58767	0.28169	0.00015473	0.31805	0.0001747	0.59974	0.00032944	549.3013054239226	18.207	0.80513	18.207	17.96	18.765	0					63	27	3	0	0	0	0.2541	1	1864	1864		37.075	18.928	1	304360			40973	9467	23745	23746	49760	49760					0.04324226500671102
RVSGTSSIYK	10	Unmodified	_RVSGTSSIYK_					0	0	0		ENST00000334370.8_1_19:42830101-42830299:+|nuORF	ENST00000334370.8_1_19:42830101-42830299:+|nuORF	ENST00000334370.8_1_19:42830101-42830299:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7643432617188	2	549.301113	1096.58767	0.29258	0.00016072	0.25847	0.00014198	0.55105	0.00030269	549.3013536111565	18.375	0.82488	18.258	18.012	18.837	-0.11739					58	28	4	0	0	0	0.31642	1	1944	1944		10.8	10.8	1	338370			40974	9467	23745	23746	49761	49761					0.04324226500671102
RVSGTSSIYK	10	Unmodified	_RVSGTSSIYK_					0	0	0		ENST00000334370.8_1_19:42830101-42830299:+|nuORF	ENST00000334370.8_1_19:42830101-42830299:+|nuORF	ENST00000334370.8_1_19:42830101-42830299:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.802734375	2	549.301113	1096.58767	0.14672	8.0594E-05	0.36153	0.00019859	0.50825	0.00027918	549.301357024206	18.357	0.67664	18.299	18.087	18.763	-0.058174					55	23	4	0	0	0	0.16374	1	1918	1918		37.075	18.928	1	396460			40975	9467	23745	23746	49762	49762					0.04324226500671102
RVSLTDKSILF	11	Unmodified	_RVSLTDKSILF_					0	0	0			REV__ENSG00000149403|ENST00000527524|GRIK4	REV__ENSG00000149403|ENST00000527524|GRIK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.9185791015625	3	426.918722	1277.73434	0.030481	1.3013E-05	-0.34488	-0.00014724	-0.3144	-0.00013422	426.91848802123314	43.367	0.5238	43.451	43.241	43.765	0.083996					44	18	3	0	0	0	0.45822	1	9523	9523		3.5927	0.96144	1	663780	+		40976	16461	23746	23747	49763	49763					0.10657903665764934
RVSLTDKSILF	11	Unmodified	_RVSLTDKSILF_					0	0	0			REV__ENSG00000149403|ENST00000527524|GRIK4	REV__ENSG00000149403|ENST00000527524|GRIK4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	426.918722	1277.73434	-0.099579	-4.2512E-05	0.03985	1.7013E-05	-0.05973	-2.55E-05	426.9185384142447	43.643	0.43764	43.643	43.441	43.878	0	0.12003	0.00045521	NaN	3.5927	47	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608200	+		40977	16461	23746	23747							0.10657903665764934
RVSLTDKSILF	11	Unmodified	_RVSLTDKSILF_					0	0	0			REV__ENSG00000149403|ENST00000527524|GRIK4	REV__ENSG00000149403|ENST00000527524|GRIK4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	426.918722	1277.73434	0.065488	2.7958E-05	-0.54315	-0.00023188	-0.47766	-0.00020392	426.9184200204338	43.397	0.49889	43.475	43.263	43.762	0.077518	-0.048147	-0.00029147	NaN	3.5927	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	640270	+		40978	16461	23746	23747							0.10657903665764934
RVSQHLGRI	9	Unmodified	_RVSQHLGRI_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3174438476562	2	533.317432	1064.62031	0.13215	7.048E-05	0.0083092	4.4314E-06	0.14046	7.4911E-05	533.3173797002856	15.237	0.48136	15.127	14.955	15.436	-0.10981					34	16	3	0	0	0	0.33276	1	984	984		3.9444	3.9444	1	107460	+		40979	15297	23747	23748	49764	49764					0.09058478414181081
RVSTEVTLAVK	11	Unmodified	_RVSTEVTLAVK_					0	0	0		ENST00000438671.3_1_3:45731844-45750997:+|nuORF;ENST00000463347.5_1_3:45730948-45748420:+|nuORF;ENST00000445499.2_1_3:45730957-45754662:+|nuORF;ENST00000463237.5_1_3:45730948-45754703:+|nuORF;ENSG00000211456|ENST00000389061|SACM1L	ENST00000438671.3_1_3:45731844-45750997:+|nuORF	ENST00000438671.3_1_3:45731844-45750997:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8591918945312	2	601.858795	1201.70304	0.33423	0.00020116	0.6064	0.00036497	0.94063	0.00056613	601.8590411392468	33.188	0.55315	33.188	32.985	33.538	0					46	19	3	0	0	0	0.012354	1	6384	6384		64.692	32.654	1	595380			40980	8328	23748	23749	49765	49765					0.11025330631650831
RVSTEVTLAVK	11	Unmodified	_RVSTEVTLAVK_					0	0	0		ENST00000438671.3_1_3:45731844-45750997:+|nuORF;ENST00000463347.5_1_3:45730948-45748420:+|nuORF;ENST00000445499.2_1_3:45730957-45754662:+|nuORF;ENST00000463237.5_1_3:45730948-45754703:+|nuORF;ENSG00000211456|ENST00000389061|SACM1L	ENST00000438671.3_1_3:45731844-45750997:+|nuORF	ENST00000438671.3_1_3:45731844-45750997:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.8589477539062	2	601.858795	1201.70304	0.42376	0.00025504	0.45307	0.00027268	0.87683	0.00052773	601.8589391114475	33.057	0.58089	33.113	32.919	33.499	0.055313					45	20	3	0	0	0	0.0068129	1	6355	6355		76.416	44.379	1	624500			40981	8328	23748	23749	49766	49766					0.11025330631650831
RVSTEVTLAVK	11	Unmodified	_RVSTEVTLAVK_					0	0	0		ENST00000438671.3_1_3:45731844-45750997:+|nuORF;ENST00000463347.5_1_3:45730948-45748420:+|nuORF;ENST00000445499.2_1_3:45730957-45754662:+|nuORF;ENST00000463237.5_1_3:45730948-45754703:+|nuORF;ENSG00000211456|ENST00000389061|SACM1L	ENST00000438671.3_1_3:45731844-45750997:+|nuORF	ENST00000438671.3_1_3:45731844-45750997:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.859375	2	601.858795	1201.70304	0.28113	0.0001692	0.69848	0.00042038	0.9796	0.00058958	601.8590492405787	33.074	0.52576	33.128	32.931	33.457	0.054371					44	18	3	0	0	0	0.0039637	1	6361	6361		82.445	47.513	1	666060			40982	8328	23748	23749	49767	49767					0.11025330631650831
RVSVVAEPK	9	Unmodified	_RVSVVAEPK_					0	0	0		ENST00000560403.5_1_14:24610645-24610756:-|nuORF;ENST00000216799.8_1_14:24610479-24610756:-|nuORF	ENST00000560403.5_1_14:24610645-24610756:-|nuORF	ENST00000560403.5_1_14:24610645-24610756:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.796142578125	2	492.795466	983.57638	0.49851	0.00024566	-0.55967	-0.00027581	-0.061169	-3.0144E-05	492.7952721395079	19.966	2.5045	19.85	19.284	21.789	-0.11592					127	88	3	0	0	0	0.30824	1	2360	2360		7.609	1.4032	1	207120			40983	8819	23749	23750	49768	49768					0.08393449197183145
RVTARPGAPRF	11	Unmodified	_RVTARPGAPRF_					0	0	0			REV__ENSG00000129744|ENST00000250693|ART1	REV__ENSG00000129744|ENST00000250693|ART1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.8876953125	3	409.907151	1226.69962	-0.00079666	-3.2656E-07	-0.54136	-0.00022191	-0.54216	-0.00022224	409.9068507442281	23.736	0.48294	23.663	23.396	23.879	-0.072559					24	16	2	0	0	0	0.33255	1	3484	3484		1.2148	0	1	50269	+		40984	15429	23750	23751	49769	49769					0.09534125368304558
RVTCRLVKRH	10	Unmodified	_RVTCRLVKRH_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3786010742188	2	634.38004	1266.74553	0.2296	0.00014566	-2.9339	-0.0018612	-2.7043	-0.0017156	634.3784116531048	105.42	0.27999	105.42	105.24	105.52	-0.0027847					67	39	3	0	0	0	0.32033	1	27906	27906		3.5965	1.098	1	116340			40985	4644	23751	23752	49770	49770					0.12282447278880682
RVTDEILHL	9	Unmodified	_RVTDEILHL_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA;PAPOLG|p.A225Vfs*43|1|0.22|ENSG00000115421|chr2:60775103-60775110|CTGTCAAA/-|frameshift_variant;ENSG00000218823|ENST00000404991|PAPOLB;nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG	ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000115421|Q9BWT3-2|PAPOLG	ENSG00000090060|ENST00000216277|PAPOLA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2698364257812	2	548.31148	1094.60841	0.56103	0.00030762	-0.11536	-6.3251E-05	0.44568	0.00024437	548.3113705025472	49.204	0.54527	49.204	48.97	49.516	0					34	19	2	0	0	0	0.20381	1	11387	11387		29.841	8.3036	1	484940			40986	1369;2645	23752	23753	49771	49771					0.06488816880346349
RVTDEILHL	9	Unmodified	_RVTDEILHL_					0	0	0		ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA;PAPOLG|p.A225Vfs*43|1|0.22|ENSG00000115421|chr2:60775103-60775110|CTGTCAAA/-|frameshift_variant;ENSG00000218823|ENST00000404991|PAPOLB;nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG	ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000115421|Q9BWT3-2|PAPOLG	ENSG00000090060|ENST00000216277|PAPOLA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.269775390625	2	548.31148	1094.60841	0.48023	0.00026331	0.013353	7.3216E-06	0.49358	0.00027063	548.31139789891	49.293	0.46398	49.338	49.102	49.566	0.044891					35	16	3	0	0	0	0.22701	1	11394	11394		23.79	7.6407	1	465780			40987	1369;2645	23752	23753	49772	49772					0.06488816880346349
RVTDPSLIFK	10	Unmodified	_RVTDPSLIFK_					0	0	0		nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8247680664062	2	588.342781	1174.67101	0.3269	0.00019233	0.3507	0.00020633	0.67759	0.00039866	588.3429313434159	43.689	0.4377	43.689	43.467	43.904	0					37	15	3	0	0	0	0.24437	1	9594	9594		27.223	14.983	1	577960			40988	5880	23753	23754	49773	49773					0.09065962948511697
RVTDPSLIFK	10	Unmodified	_RVTDPSLIFK_					0	0	0		nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.8246459960938	2	588.342781	1174.67101	0.41669	0.00024516	0.10933	6.4326E-05	0.52603	0.00030948	588.3428534737786	43.544	0.62646	43.621	43.373	43.999	0.077518					38	22	3	0	0	0	0.28174	1	9520	9520		22.658	4.285	1	528040			40989	5880	23753	23754	49774	49774					0.09065962948511697
RVTDPSLIFK	10	Unmodified	_RVTDPSLIFK_					0	0	0		nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	588.342781	1174.67101	0.46868	0.00027574	0.2335	0.00013738	0.70218	0.00041312	588.3428836779772	43.474	0.48235	43.558	43.384	43.866	0.083992	-0.064782	-2.4962E-05	NaN	27.223	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	541880			40990	5880	23753	23754							0.09065962948511697
RVTPFILKK	9	Unmodified	_RVTPFILKK_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.3609619140625	2	551.360776	1100.707	0.51964	0.00028651	-0.23796	-0.0001312	0.28168	0.00015531	551.360549701669	29.768	0.56024	29.768	29.58	30.141	0					39	19	3	0	0	0	0.27303	1	5396	5396		12.873	2.7987	1	262050			40991	6882	23754	23755	49775	49775					0.16067464916045537
RVTPFILKK	9	Unmodified	_RVTPFILKK_					0	0	0		ENST00000354833.7_1_5:70213930-70214023:+|nuORF;ENSG00000175768|ENST00000321301|TOMM5	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	ENST00000354833.7_1_5:70213930-70214023:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.3609008789062	2	551.360776	1100.707	0.13652	7.5274E-05	0.015264	8.4162E-06	0.15179	8.369E-05	551.360788912776	29.801	0.5328	29.814	29.536	30.069	0.013474					31	17	2	0	0	0	0.24247	1	5380	5380		17.443	7.3687	1	233600			40992	6882	23754	23755	49776	49776					0.16067464916045537
RVTQPELI	8	Unmodified	_RVTQPELI_					0	0	0		BAP1|p.N349Tfs*13|1|0.23|ENSG00000163930|chr3:52405180-52405180|T/-|frameshift_variant;BAP1|p.E283Gfs*52|1|0.19|ENSG00000163930|chr3:52405848-52405848|T/-|frameshift_variant;BAP1|p.L361*|1|0.21|ENSG00000163930|chr3:52405145-52405145|G/-|frameshift_variant;BAP1|p.V335Efs*56|1|0.35|ENSG00000163930|chr3:52405203-52405222|GCTGCCTGGAGGCTTCACCA/-|frameshift_variant;BAP1|p.E406Gfs*3|1|0.25|ENSG00000163930|chr3:52404486-52404487|-/C|frameshift_variant;BAP1|p.D407Vfs*23|1|0.16|ENSG00000163930|chr3:52404483-52404483|T/-|frameshift_variant;BAP1|p.C543Yfs*27|1|0.13|ENSG00000163930|chr3:52403514-52403517|ATGC/-|frameshift_variant;BAP1|p.P618Lfs*5|1|0.34|ENSG00000163930|chr3:52403175-52403175|G/-|frameshift_variant;BAP1|p.F678Cfs*34|1|0.37|ENSG00000163930|chr3:52402612-52402625|CAGCATGGAGATAA/-|frameshift_variant;ENSG00000163930|ENST00000460680|BAP1	BAP1|p.N349Tfs*13|1|0.23|ENSG00000163930|chr3:52405180-52405180|T/-|frameshift_variant	BAP1|p.N349Tfs*13|1|0.23|ENSG00000163930|chr3:52405180-52405180|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2718505859375	2	478.282192	954.549831	0.052719	2.5214E-05	-0.35337	-0.00016901	-0.30065	-0.0001438	478.2821005289775	40.918	0.37759	40.918	40.662	41.039	0					29	13	3	0	0	0	0.33441	1	8806	8806		26.884	5.3467	1	347350			40993	69	23755	23756	49777	49777					0.07073760305854648
RVTRPRLPF	9	Unmodified	_RVTRPRLPF_					0	0	0		ENST00000485076.1_1_17:49244191-49244524:+|nuORF	ENST00000485076.1_1_17:49244191-49244524:+|nuORF	ENST00000485076.1_1_17:49244191-49244524:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.3492431640625	2	571.351274	1140.688	0.090446	5.1677E-05	-3.0694	-0.0017537	-2.9789	-0.001702	571.3491486205515	12.201	0.22668	12.104	11.979	12.206	-0.096607					18	9	3	0	0	0	0.25988	1	62	62		3.9444	0	1	50695			40994	11085	23756	23757	49778	49778					0.12327928344961947
RVTSKALEL	9	Unmodified	_RVTSKALEL_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.80853271484375	2	508.808574	1015.60259	0.51254	0.00026078	-0.62454	-0.00031777	-0.112	-5.6986E-05	508.8083222937255	29.438	0.75216	29.438	29.218	29.97	0					56	26	3	0	0	0	0.07848	1	5249	5249		42.312	8.8676	1	293510			40995	1650	23757	23758	49779	49779					0.09541718368643615
RVTSKALEL	9	Unmodified	_RVTSKALEL_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8084411621094	2	508.808574	1015.60259	0.31013	0.0001578	-0.31257	-0.00015904	-0.0024344	-1.2386E-06	508.80838788261866	29.394	0.7478	29.406	29.11	29.858	0.012266					51	25	3	0	0	0	0.26278	1	5281	5281		14.405	0.49933	1	304300			40996	1650	23757	23758	49780	49780					0.09541718368643615
RVTSKALEL	9	Unmodified	_RVTSKALEL_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.808574	1015.60259	0.085377	4.3441E-05	-0.068988	-3.5102E-05	0.016389	8.3389E-06	508.80853902169576	29.467	0.52533	29.48	29.22	29.745	0.013474	0.038433	0.00027053	NaN	42.312	44	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310200			40997	1650	23757	23758							0.09541718368643615
RVTYPAKAK	9	Unmodified	_RVTYPAKAK_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3111572265625	2	517.311284	1032.60801	0.031726	1.6412E-05	-0.038906	-2.0127E-05	-0.0071797	-3.7141E-06	517.3112666934229	13.383	0.93396	13.383	13.09	14.024	0					74	32	4	0	0	0	0.038291	1	399	399		57.249	22.847	1	1263600			40998	2840	23758	23759	49781	49781					0.09301441951129163
RVTYPAKAK	9	Unmodified	_RVTYPAKAK_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3111572265625	2	517.311284	1032.60801	-0.058941	-3.0491E-05	0.15925	8.2383E-05	0.10031	5.1892E-05	517.3113411711445	13.45	0.64976	13.351	13.069	13.718	-0.099291					74	22	5	0	0	0	0.018042	1	424	424		67.081	32.679	1	1293000			40999	2840	23758	23759	49782	49782					0.09301441951129163
RVTYPAKAK	9	Unmodified	_RVTYPAKAK_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.311279296875	2	517.311284	1032.60801	-0.12024	-6.2201E-05	0.24348	0.00012595	0.12324	6.3753E-05	517.311360441936	13.445	0.67075	13.377	13.102	13.773	-0.067496					74	23	4	0	0	0	0.027957	1	427	427		61.09	26.688	1	1254100			41000	2840	23758	23759	49783	49783					0.09301441951129163
RVVFIDKEPN	10	Unmodified	_RVVFIDKEPN_					0	0	0			REV__nc|ENSG00000125869|Q9UJQ1-2|LAMP5	REV__nc|ENSG00000125869|Q9UJQ1-2|LAMP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.837890625	2	608.837862	1215.66117	-0.013757	-8.376E-06	-0.033989	-2.0694E-05	-0.047747	-2.907E-05	608.8376537357569	105.7	0.97192	105.7	105.33	106.3	0					340	139	3	0	0	0	0.40106	2	27961	27961;28066		3.2813	0.28607	1	931180	+		41001	15289	23759	23760	49784;49785	49784					0.061967749431460106
RVVFIDKEPN	10	Unmodified	_RVVFIDKEPN_					0	0	0			REV__nc|ENSG00000125869|Q9UJQ1-2|LAMP5	REV__nc|ENSG00000125869|Q9UJQ1-2|LAMP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8373413085938	2	608.837862	1215.66117	0.18709	0.00011391	-0.29072	-0.000177	-0.10364	-6.3098E-05	608.8375189610648	105.7	1.0637	105.7	105.22	106.28	-0.0027847					373	153	3	0	0	0	0.40106	2	28034	28034;28066		3.2813	0.28607	1	963300	+		41002	15289	23759	23760	49786;49787	49786					0.061967749431460106
RVVFIDKEPN	10	Unmodified	_RVVFIDKEPN_					0	0	0			REV__nc|ENSG00000125869|Q9UJQ1-2|LAMP5	REV__nc|ENSG00000125869|Q9UJQ1-2|LAMP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8367309570312	2	608.837862	1215.66117	0.2454	0.00014941	-0.2651	-0.0001614	-0.019691	-1.1989E-05	608.8375255550451	105.8	0.92616	105.8	105.37	106.29	0.0031738					349	133	3	0	0	0	0.40106	2	27963	27963;28085		3.2813	3.2813	1	1060400	+		41003	15289	23759	23760	49788;49789	49788					0.061967749431460106
RVVQLLII	8	Unmodified	_RVVQLLII_					0	0	0		ENSG00000109991|ENST00000263314|P2RX3	ENSG00000109991|ENST00000263314|P2RX3	ENSG00000109991|ENST00000263314|P2RX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7684326171875	2	477.328945	952.643337	0.23399	0.00011169	-0.45051	-0.00021504	-0.21651	-0.00010335	477.3287676285196	72.184	0.51709	72.184	71.911	72.428	0					41	18	3	0	0	0	0.34131	1	18339	18339		12.532	1.7076	1	142580			41004	2286	23760	23761	49790	49790					0.1651210447896574
RVVSVLTVL	9	Unmodified	_RVVSVLTVL_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.3240966796875	2	493.32386	984.633166	0.3591	0.00017715	0.044729	2.2066E-05	0.40383	0.00019922	493.3239132630626	62.054	1.1461	62.054	61.784	62.93	0					123	42	4	0	0	0	0.069258	2	15311	15260;15311		45.74	19.472	1	6225600			41005	12934	23761	23762	49791;49792	49792					0.14023496753691234
RVVSVLTVL	9	Unmodified	_RVVSVLTVL_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.3242492675781	2	493.32386	984.633166	0.1149	5.6684E-05	0.29005	0.00014309	0.40495	0.00019977	493.32405426737563	61.965	1.1679	62.062	61.79	62.958	0.096985					122	42	5	0	0	0	0.059067	2	15264	15216;15264		49.527	21.898	1	6245500			41006	12934	23761	23762	49793;49794	49794					0.14023496753691234
RVVSVLTVL	9	Unmodified	_RVVSVLTVL_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.3241882324219	2	493.32386	984.633166	0.22651	0.00011174	0.25528	0.00012593	0.48179	0.00023768	493.3240182809456	62.032	1.2938	62.024	61.7	62.994	-0.0085526					126	47	4	0	0	0	0.053988	2	15281	15235;15281		51.415	23.786	1	6476000			41007	12934	23761	23762	49795;49796	49796					0.14023496753691234
RVVVRNKNY	9	Unmodified	_RVVVRNKNY_					0	0	0		ENST00000368804.5_1_1:152079991-152080243:-|nuORF	ENST00000368804.5_1_1:152079991-152080243:-|nuORF	ENST00000368804.5_1_1:152079991-152080243:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.338134765625	2	574.338364	1146.66217	0.38583	0.0002216	-1.0255	-0.00058898	-0.63967	-0.00036739	574.3377229353961	87.706	0.66092	87.706	87.416	88.077	0					54	30	3	0	0	0	0.34536	1	23147	23147		2.0598	0.21551	1	115280			41008	9769	23762	23763	49797	49797					0.0947103410269392
RVWLSEQLPLL	11	Unmodified	_RVWLSEQLPLL_					0	0	0			REV__ENST00000479136.5_1_17:38062491-38062560:-|nuORF	REV__ENST00000479136.5_1_17:38062491-38062560:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.9344177246094	3	451.934484	1352.78162	0.55821	0.00025228	-0.57095	-0.00025803	-0.012738	-5.7566E-06	451.9341418821658	54.764	0.65642	54.764	54.405	55.061	0					60	23	4	0	0	0	0.43513	1	13002	13002		6.6235	0.3891	1	1188800	+		41009	21464	23763	23764	49798	49798					0.1193418293673858
RVWLSEQLPLL	11	Unmodified	_RVWLSEQLPLL_					0	0	0			REV__ENST00000479136.5_1_17:38062491-38062560:-|nuORF	REV__ENST00000479136.5_1_17:38062491-38062560:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.93438720703125	3	451.934484	1352.78162	0.47245	0.00021352	-0.63933	-0.00028894	-0.16688	-7.5419E-05	451.93414363283625	54.72	0.69742	54.783	54.483	55.181	0.063202					62	25	4	0	0	0	0.33146	1	12989	12989		6.6235	0	1	1196000	+		41010	21464	23763	23764	49799	49799					0.1193418293673858
RVWLSEQLPLL	11	Unmodified	_RVWLSEQLPLL_					0	0	0			REV__ENST00000479136.5_1_17:38062491-38062560:-|nuORF	REV__ENST00000479136.5_1_17:38062491-38062560:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2688293457031	3	451.934484	1352.78162	0.53812	0.00024319	-0.3674	-0.00016604	0.17072	7.7156E-05	451.9341636913683	54.824	0.82308	54.808	54.415	55.238	-0.015923					61	29	4	0	0	0	0.41892	1	13029	13029		8.7518	2.1283	1	1132800	+		41011	21464	23763	23764	49800	49800					0.1193418293673858
RVWLSEQLPLL	11	Unmodified	_RVWLSEQLPLL_					0	0	0			REV__ENST00000479136.5_1_17:38062491-38062560:-|nuORF	REV__ENST00000479136.5_1_17:38062491-38062560:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	451.934484	1352.78162	0.53812	0.00024319	-0.3674	-0.00016604	0.17072	7.7156E-05	451.9341636913683	54.824	0.82308	54.808	54.415	55.238	-0.015923	0.023149	0.00012485	NaN	6.6235	61	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1132800	+		41012	21464	23763	23764							0.1193418293673858
RVWLSGKP	8	Unmodified	_RVWLSGKP_					0	0	0			REV__ENSG00000116209|ENST00000234831|TMEM59	REV__ENSG00000116209|ENST00000234831|TMEM59	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.79791259765625	2	471.779619	941.544686	-0.044413	-2.0953E-05	-0.11707	-5.5233E-05	-0.16149	-7.6187E-05	471.77945125488515	25.665	0.86711	25.643	25.056	25.923	-0.022236					54	30	3	0	0	0	0.4354	1	4081	4081		10.824	1.4765	1	476320	+		41013	14918	23764	23765	49801	49801					0.07157501233893981
RVYAKETQ	8	Unmodified	_RVYAKETQ_					0	0	0			REV__nc|ENSG00000160145|O60229-2|KALRN;REV__nc|ENSG00000038382|O75962-2|TRIO	REV__nc|ENSG00000160145|O60229-2|KALRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7203063964844	2	497.769448	993.524344	0.42336	0.00021074	0.21942	0.00010922	0.64278	0.00031996	497.76950177683534	19.76	0.72968	19.704	19.2	19.93	-0.055693					54	25	3	0	0	0	0.34167	1	2374	2374		11.64	0.81637	1	113290	+		41014	16880;13516	23765	23766	49802	49802					0.027322857834292336
RVYDLGKKK	9	Unmodified	_RVYDLGKKK_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.83740234375	2	553.837665	1105.66078	-0.066798	-3.6995E-05	-0.3994	-0.0002212	-0.46619	-0.0002582	553.8372895798022	13.887	0.28957	13.821	13.687	13.977	-0.066068					21	9	3	0	0	0	0.30824	1	570	570		7.609	2.7119	1	159810			41015	7801	23766	23767	49803	49803					0.11217400013947554
RVYEANVEK	9	Unmodified	_RVYEANVEK_					0	0	0		ENSG00000114331|ENST00000326793|ACAP2;ENST00000475905.5_1_3:195016371-195022834:-|nuORF	ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.293212890625	2	554.293288	1106.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.75	1	17.633	17.133	18.133	-0.11739								0	0	0	0.2225	1	1726	1726		15.248	0	1				41016	2556	23767	23768	49804	49804					0.0229993998361806
RVYEANVEK	9	Unmodified	_RVYEANVEK_					0	0	0		ENSG00000114331|ENST00000326793|ACAP2;ENST00000475905.5_1_3:195016371-195022834:-|nuORF	ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2933349609375	2	554.293288	1106.57202	0.19564	0.00010844	-0.21059	-0.00011673	-0.014946	-8.2845E-06	554.2932185930309	17.644	0.4877	17.584	17.384	17.872	-0.060431					37	16	4	0	0	0	0.30459	1	1701	1701		8.1555	0	1	86586			41017	2556	23767	23768	49805	49805					0.0229993998361806
RVYGGLTTK	9	Unmodified	_RVYGGLTTK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.78765869140625	2	497.787641	993.56073	0.34191	0.0001702	0.20054	9.9824E-05	0.54244	0.00027002	497.78765115691766	20.003	0.93752	20.003	19.685	20.622	0					85	34	4	0	0	0	0.0011116	4	2395	2351;2395;2436;2485		121.35	70.593	1	1533800			41018	6434	23768	23769	49806;49807;49808;49809	49807					0.06369162680118734
RVYGGLTTK	9	Unmodified	_RVYGGLTTK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7876281738281	2	497.787641	993.56073	0.51841	0.00025806	-0.17283	-8.603E-05	0.34559	0.00017203	497.78749455048194	20.161	0.96524	20.045	19.758	20.723	-0.11592					90	34	5	0	0	0	0.003673	4	2457	2412;2457;2503;2556		96.936	43.486	1	1603300			41019	6434	23768	23769	49810;49811;49812;49813	49811					0.06369162680118734
RVYGGLTTK	9	Unmodified	_RVYGGLTTK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7877197265625	2	497.787641	993.56073	0.59332	0.00029535	-0.16349	-8.1381E-05	0.42983	0.00021396	497.78749367184656	20.075	1.0712	20.02	19.735	20.806	-0.055693					81	38	4	0	0	0	0.0044119	4	2426	2382;2426;2478;2526		91.085	38.816	1	1669300			41020	6434	23768	23769	49814;49815;49816;49817	49815					0.06369162680118734
RVYLKKMIRQP	11	Unmodified	_RVYLKKMIRQP_					0	0	0		PCLO|p.V1269Yfs*49|1|0.38|ENSG00000186472|chr7:82965983-82965983|C/-|frameshift_variant	PCLO|p.V1269Yfs*49|1|0.38|ENSG00000186472|chr7:82965983-82965983|C/-|frameshift_variant	PCLO|p.V1269Yfs*49|1|0.38|ENSG00000186472|chr7:82965983-82965983|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.95892333984375	3	477.958746	1430.85441	0.2872	0.00013727	0.11869	5.6728E-05	0.40589	0.000194	477.9587866012619	90.5	1.0181	90.59	89.847	90.865	0.090675					160	79	5	0	0	0	0.47545	1	24049	24049		1.3296	0.31607	1	1572300			41021	13042	23769	23770	49818	49818					0.15621613458506545
RVYSNSIYELL	11	Unmodified	_RVYSNSIYELL_					0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2322998046875	3	452.910115	1355.70852	-0.014272	-6.4641E-06	0.21751	9.8513E-05	0.20324	9.2049E-05	452.91020840512346	18.209	0.65654	18.092	17.784	18.44	-0.11739					60	22	4	0	0	0	0.3331	1	1963	1963		2.2527	0.79761	1	116330			41022	7464	23770	23771	49819	49819					0.04489009423468815
RVYTIEYAKGL	11	Unmodified	_RVYTIEYAKGL_					0	0	0			REV__ENST00000480883.1_1_9:133884589-133967089:+|nuORF	REV__ENST00000480883.1_1_9:133884589-133967089:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2471008300781	3	438.246839	1311.71869	-0.084485	-3.7025E-05	1.6654	0.00072985	1.5809	0.00069283	438.24739690861	23.976	0.6629	23.976	23.616	24.279	0					37	22	2	0	0	0	0.46554	1	3668	3668		2.6312	0.19645	1	64488	+		41023	13565	23771	23772	49820	49820					0.07529617148702528
RVYYVSEKIMK	11	Oxidation (M)	_RVYYVSEKIM(Oxidation (M))K_		RVYYVSEKIM(1)K		RVYYVSEKIM(55)K	0	0	1		nc|ENSG00000132603|Q9Y221-2|NIP7;ENSG00000132603|ENST00000254940|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.9269714355469	3	477.927	1430.75917	0.075777	3.6216E-05	0.089171	4.2617E-05	0.16495	7.8833E-05	477.9269291645795	27.129	0.74773	27.129	26.841	27.589	0					88	25	4	0	0	0	0.044534	1	4566	4566		54.823	43.757	1	805650			41024	3652	23772	23773	49821	49821		462			0.06102215476812489
RVYYVSEKIMK	11	Oxidation (M)	_RVYYVSEKIM(Oxidation (M))K_		RVYYVSEKIM(1)K		RVYYVSEKIM(58)K	0	0	1		nc|ENSG00000132603|Q9Y221-2|NIP7;ENSG00000132603|ENST00000254940|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.92694091796875	3	477.927	1430.75917	0.11475	5.4843E-05	0.084952	4.0601E-05	0.1997	9.5444E-05	477.9269613917248	27.109	0.93173	27.087	26.788	27.72	-0.02141					113	32	5	0	0	0	0.033944	2	4541	4541;4586		57.885	49.598	1	860690			41025	3652	23772	23773	49822;49823	49822		462			0.06102215476812489
RVYYVSEKIMK	11	Oxidation (M)	_RVYYVSEKIM(Oxidation (M))K_		RVYYVSEKIM(1)K		RVYYVSEKIM(55)K	0	0	1		nc|ENSG00000132603|Q9Y221-2|NIP7;ENSG00000132603|ENST00000254940|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	nc|ENSG00000132603|Q9Y221-2|NIP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.26153564453125	3	477.927	1430.75917	0.18767	8.9693E-05	0.048437	2.315E-05	0.23611	0.00011284	477.92693839565914	27.181	0.88127	27.17	26.822	27.703	-0.01156					85	30	5	0	0	0	0.044534	2	4577	4533;4577		54.823	46.536	1	926350			41026	3652	23772	23773	49824;49825	49825		462			0.06102215476812489
RWARQINEF	9	Unmodified	_RWARQINEF_					0	0	0			REV__nc|ENSG00000283154|B3KU38-2|IQCJ-SCHIP1	REV__nc|ENSG00000283154|B3KU38-2|IQCJ-SCHIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.2785034179688	2	610.320171	1218.62579	0.65175	0.00039777	-0.6441	-0.00039311	0.0076478	4.6676E-06	610.3193097271522	54.432	0.6496	54.432	54.268	54.917	0					28	23	2	0	0	0	0.25689	1	12908	12908		7.2892	0.56607	1	200940	+		41027	23237	23773	23774	49826	49826					0.025221572059763275
RWDSIWDLSI	10	Unmodified	_RWDSIWDLSI_					0	0	0		ENST00000333055.8_1_5:180235916-180242536:-|nuORF	ENST00000333055.8_1_5:180235916-180242536:-|nuORF	ENST00000333055.8_1_5:180235916-180242536:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8885498046875	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.314	1	29.326	28.826	29.826	0.012266								0	0	0	0.37739	1	5230	5230		1.5923	0	1				41028	9458	23774	23775	49827	49827					0.007201845634881465
RWERWEESRRR	11	Unmodified	_RWERWEESRRR_					0	0	0			REV__ENST00000553467.1_1_14:96178094-96178262:-|nuORF	REV__ENST00000553467.1_1_14:96178094-96178262:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5786437988281	4	412.215915	1644.83455	-0.11264	-4.6431E-05	0.83524	0.0003443	0.72261	0.00029787	412.46705230746727	30.061	0.52192	30.089	29.759	30.281	0.027157					36	17	3	0	0	0	0.33347	1	5360	5360		0.08335	0	1	93300	+		41029	22224	23775	23776	49828	49828					0.03792953772085639
RWFEERFMIEY	11	Unmodified	_RWFEERFMIEY_					0	0	0			REV__ENSG00000142798|ENST00000374695|HSPG2	REV__ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.8051147460938	3	535.922138	1604.74458	0.16755	8.9792E-05	0.090294	4.8391E-05	0.25784	0.00013818	535.9222105269415	14.035	0.85559	14.035	13.767	14.623	0					94	29	5	0	0	0	0.33351	1	536	536		0.094841	0.094841	1	1369600	+		41030	16137	23776	23777	49829	49829					-0.033598566713180844
RWFICLFVDI	10	Unmodified	_RWFICLFVDI_					0	0	0		nc|ENSG00000139835|Q5TC63-2|GRTP1;ENSG00000139835|ENST00000375431|GRTP1;nc|ENSG00000139835|Q5TC63-3|GRTP1	nc|ENSG00000139835|Q5TC63-2|GRTP1	nc|ENSG00000139835|Q5TC63-2|GRTP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2735595703125	3	437.902126	1310.68455	-0.58615	-0.00025667	0.11111	4.8655E-05	-0.47504	-0.00020802	437.90219049159856	34.333	0.6378	34.399	34.092	34.73	0.06636					50	22	3	0	0	0	0.32051	1	6718	6718		3.8763	2.4212	1	292910			41031	4267	23777	23778	49830	49830					0.0416349745610205
RWFSHVPWEPA	11	Unmodified	_RWFSHVPWEPA_					0	0	0		nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	nc|ENSG00000059145|Q9H9P5-6|UNKL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2562561035156	3	471.235045	1410.6833	0.50141	0.00023628	0.015767	7.4301E-06	0.51718	0.00024371	471.2354617858608	32.166	0.1359	32.208	32.169	32.305	0.042366					5	4	2	0	0	0	0.33122	1	6092	6092		7.0371	4.1938	1	52535			41032	12576	23778	23779	49831	49831					-0.005610005884136626
RWHNLPFH	8	Unmodified	_RWHNLPFH_					0	0	0			REV__ENST00000556933.1_1_14:65067322-65068336:-|nuORF	REV__ENST00000556933.1_1_14:65067322-65068336:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.7337646484375	2	553.785767	1105.55698	0.0039856	2.2072E-06	-0.14684	-8.1318E-05	-0.14285	-7.9111E-05	554.286970788521	13.243	0.15186	13.144	13.097	13.249	-0.099291					9	4	3	0	0	0	0.344	1	384	384		2.5775	0.078994	1	19230	+		41033	22266	23779	23780	49832	49832					0.008425376969398712
RWHREGPP	8	Unmodified	_RWHREGPP_					0	0	0		ENST00000591201.5_1_19:1487843-1489828:-|nuORF;ENST00000587784.5_1_19:1487843-1490668:-|nuORF	ENST00000591201.5_1_19:1487843-1489828:-|nuORF	ENST00000591201.5_1_19:1487843-1489828:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2319946289062	2	517.767575	1033.5206	0.33055	0.00017115	-0.27481	-0.00014229	0.055735	2.8858E-05	517.766797232992	29.185	0.56458	29.197	29.025	29.589	0.012264					51	19	4	0	0	0	0.34247	1	5272	5272		8.5933	2.8614	1	265420			41034	12134	23780	23781	49833	49833					0.005176608002102512
RWHREGPP	8	Unmodified	_RWHREGPP_					0	0	0		ENST00000591201.5_1_19:1487843-1489828:-|nuORF;ENST00000587784.5_1_19:1487843-1490668:-|nuORF	ENST00000591201.5_1_19:1487843-1489828:-|nuORF	ENST00000591201.5_1_19:1487843-1489828:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2318725585938	2	517.767575	1033.5206	0.12833	6.6447E-05	0.16467	8.5263E-05	0.29301	0.00015171	517.7666597811765	29.198	0.89521	29.212	28.728	29.623	0.013474					59	31	3	0	0	0	0.34092	1	5292	5292		13.508	4.1604	1	254090			41035	12134	23780	23781	49834	49834					0.005176608002102512
RWHYLFLA	8	Unmodified	_RWHYLFLA_					0	0	0		ENST00000275034.4_1_6:79735241-79735325:-|nuORF	ENST00000275034.4_1_6:79735241-79735325:-|nuORF	ENST00000275034.4_1_6:79735241-79735325:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3004150390625	2	553.300719	1104.58688	0.059831	3.3104E-05	-0.40618	-0.00022474	-0.34635	-0.00019163	553.300365356295	64.979	0.80926	64.968	64.721	65.53	-0.01133					84	29	4	0	0	0	0.33245	1	16176	16176		19.439	19.439	1	1387000			41036	9102	23781	23782	49835	49835					0.0387747664226481
RWIAMTGLVVA	11	Unmodified	_RWIAMTGLVVA_					0	0	0			REV__nc|ENSG00000172243|Q9BXN2-3|CLEC7A	REV__nc|ENSG00000172243|Q9BXN2-3|CLEC7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8472290039062	2	608.847176	1215.6798	0.50749	0.00030899	-0.27175	-0.00016546	0.23574	0.00014353	608.8470185079906	84.018	2.8329	84.001	83.288	86.121	-0.016823					302	115	3	0	0	0	0.44828	1	21925	21925		4.897	4.897	1	2678900	+		41037	17701	23782	23783	49836	49836					0.08058613313323804
RWIPVRSRRRR	11	Unmodified	_RWIPVRSRRRR_					0	0	0			REV__ENST00000458412.1_2_15:44092902-44093782:+|nuORF	REV__ENST00000458412.1_2_15:44092902-44093782:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8334350585938	3	513.318548	1536.93381	0.24327	0.00012487	2.3298	0.001196	2.5731	0.0013208	513.3196308718507	96.739	0.050522	96.734	96.703	96.753	-0.0055466					6	4	2	0	0	0	0.33352	1	25882	25882		0.08335	0	1	79155	+		41038	21188	23783	23784	49837	49837					0.18682441247506176
RWIPVRSRRRR	11	Unmodified	_RWIPVRSRRRR_					0	0	0			REV__ENST00000458412.1_2_15:44092902-44093782:+|nuORF	REV__ENST00000458412.1_2_15:44092902-44093782:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	513.318548	1536.93381	0.059938	3.0767E-05	2.5249	0.0012961	2.5848	0.0013268	513.319948262283	96.407	0.10542	96.407	96.343	96.448	0	-0.16348	0.00013339	NaN	0.08335	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42420	+		41039	21188	23783	23784							0.18682441247506176
RWKKKRTRFML	11	Unmodified	_RWKKKRTRFML_					0	0	0			REV__ENSG00000109756|ENST00000691494|RAPGEF2	REV__ENSG00000109756|ENST00000691494|RAPGEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.64453125	3	517.313523	1548.91874	0.070895	3.6675E-05	-0.78408	-0.00040562	-0.71319	-0.00036894	517.3131278385438	96.872	0.60371	96.872	96.76	97.363	0					70	56	2	0	0	0	0.33352	1	26014	26014		0	0	1	169830	+		41040	14651	23784	23785	49838	49838					0.16623813335309023
RWKKKRTRFML	11	Unmodified	_RWKKKRTRFML_					0	0	0			REV__ENSG00000109756|ENST00000691494|RAPGEF2	REV__ENSG00000109756|ENST00000691494|RAPGEF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	517.313523	1548.91874	0.14888	7.7019E-05	-1.0164	-0.00052582	-0.86756	-0.0004488	517.3130907996309	96.598	0.58009	96.669	96.442	97.022	0.070465	-0.10173	-0.00021958	NaN	0	79	56	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219520	+		41041	14651	23784	23785							0.16623813335309023
RWKRKRRRSQE	11	Unmodified	_RWKRKRRRSQE_					0	0	0		ENST00000557821.5_1_15:40588574-40589003:-|nuORF;ENST00000260402.7_1_15:40588574-40589003:-|nuORF	ENST00000557821.5_1_15:40588574-40589003:-|nuORF	ENST00000557821.5_1_15:40588574-40589003:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7736206054688	3	529.313462	1584.91856	0.33461	0.00017712	-0.40948	-0.00021674	-0.074865	-3.9627E-05	529.313456858302	94.427	1.529	94.51	93.443	94.972	0.082779					175	121	3	0	0	0	0.33352	1	24943	24943		0	0	1	184980			41042	8957	23785	23786	49839	49839					0.14949529659656946
RWKRKRRRSQE	11	Unmodified	_RWKRKRRRSQE_					0	0	0		ENST00000557821.5_1_15:40588574-40589003:-|nuORF;ENST00000260402.7_1_15:40588574-40589003:-|nuORF	ENST00000557821.5_1_15:40588574-40589003:-|nuORF	ENST00000557821.5_1_15:40588574-40589003:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7737426757812	3	529.313462	1584.91856	0.58546	0.00030989	-0.63734	-0.00033735	-0.051887	-2.7464E-05	529.313335289396	94.479	1.2435	94.477	93.852	95.095	-0.0020065					139	100	2	0	0	0	0.33352	1	25134	25134		0	0	1	252850			41043	8957	23785	23786	49840	49840					0.14949529659656946
RWKRYRGR	8	Unmodified	_RWKRYRGR_					0	0	0		ENST00000377084.3_1_13:84455547-84455634:-|nuORF	ENST00000377084.3_1_13:84455547-84455634:-|nuORF	ENST00000377084.3_1_13:84455547-84455634:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.341796875	2	589.344315	1176.67408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.17	1	118.17	117.67	118.67	0								0	0	0	0.38004	1	30533	30533		0.69038	0	1				41044	9928	23786	23787	49841	49841					0.09280695636562086
RWKRYRGR	8	Unmodified	_RWKRYRGR_					0	0	0		ENST00000377084.3_1_13:84455547-84455634:-|nuORF	ENST00000377084.3_1_13:84455547-84455634:-|nuORF	ENST00000377084.3_1_13:84455547-84455634:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3422241210938	2	589.344315	1176.67408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.29	1	118.31	117.81	118.81	0.026253								0	0	0	0.38004	1	30633	30633		0.69038	0	1				41045	9928	23786	23787	49842	49842					0.09280695636562086
RWKRYRGR	8	Unmodified	_RWKRYRGR_					0	0	0		ENST00000377084.3_1_13:84455547-84455634:-|nuORF	ENST00000377084.3_1_13:84455547-84455634:-|nuORF	ENST00000377084.3_1_13:84455547-84455634:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3434448242188	2	589.344315	1176.67408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.83	1	119.85	119.35	120.35	0.027756								0	0	0	0.38004	1	30978	30978		0.69038	0.16561	1				41046	9928	23786	23787	49843	49843					0.09280695636562086
RWLLRLTR	8	Unmodified	_RWLLRLTR_					0	0	0			REV__ENSG00000185522|ENST00000329451|LMNTD2	REV__ENSG00000185522|ENST00000329451|LMNTD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.77392578125	2	557.353817	1112.69308	0.16223	9.0421E-05	-2.0446	-0.0011396	-1.8824	-0.0010492	557.3528703780117	26.21	0.19302	26.21	26.078	26.271	0					9	6	2	0	0	0	0.34408	1	4274	4274		2.3027	0	1	57430	+		41047	18387	23787	23788	49844	49844					0.1412423220758683
RWLRWKASLIK	11	Unmodified	_RWLRWKASLIK_					0	0	0		ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7773132324219	3	486.301501	1455.88267	0.31811	0.0001547	1.0176	0.00049485	1.3357	0.00064955	486.63627980127546	38.148	0.30907	38.239	38.011	38.32	0.090881					14	10	2	0	0	0	0.33303	1	7941	7941		2.4348	2.0681	1	82989			41048	7981	23788	23789	49845	49845					0.17296679430114636
RWLRWKASLIK	11	Unmodified	_RWLRWKASLIK_					0	0	0		ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	486.301501	1455.88267	0.23484	0.0001142	1.098	0.00053394	1.3328	0.00064814	486.30184890158	38.029	0.19845	38.126	38.037	38.235	0.097527	-0.056077	0.00010195	NaN	2.4348	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76225			41049	7981	23788	23789							0.17296679430114636
RWLSFFSWRLW	11	Unmodified	_RWLSFFSWRLW_					0	0	0		ENST00000515255.5_1_4:106629974-106647758:+|nuORF;ENST00000512828.1_1_4:106629974-106630220:+|nuORF	ENST00000515255.5_1_4:106629974-106647758:+|nuORF	ENST00000515255.5_1_4:106629974-106647758:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7279052734375	3	528.613856	1582.81974	0.59398	0.00031399	0.69554	0.00036767	1.2895	0.00068166	528.6140570059645	53.15	0.53275	53.15	52.96	53.493	0					44	19	3	0	0	0	0.33348	1	12530	12530		0.40827	0.335	1	475360			41050	11398	23789	23790	49846	49846					0.0516411364205851
RWLSRVLLFFS	11	Unmodified	_RWLSRVLLFFS_					0	0	0			REV__ENSG00000121314|ENST00000240615|TAS2R8	REV__ENSG00000121314|ENST00000240615|TAS2R8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.2785949707031	3	475.278473	1422.81359	0.51455	0.00024456	-0.42298	-0.00020103	0.091576	4.3524E-05	475.2781617466958	55.072	1.1242	55.14	54.727	55.851	0.067966					136	41	4	0	0	0	0.46704	1	13205	13205		2.4348	0.97967	1	2548900	+		41051	15116	23790	23791	49847	49847					0.11909595410543261
RWLWGAFKFY	10	Unmodified	_RWLWGAFKFY_					0	0	0		MER4B_dup527|chr6:122787132-122787728:-|2.108215958663084|0.3086731057714426|2.77|542.0|26|1|anti-sense	MER4B_dup527|chr6:122787132-122787728:-|2.108215958663084|0.3086731057714426|2.77|542.0|26|1|anti-sense	MER4B_dup527|chr6:122787132-122787728:-|2.108215958663084|0.3086731057714426|2.77|542.0|26|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7642822265625	3	458.576631	1372.70806	-0.26339	-0.00012078	-0.75993	-0.00034849	-1.0233	-0.00046927	458.9106268108726	13.859	0.38836	13.755	13.603	13.991	-0.10466					25	13	3	0	0	0	0.32165	1	543	543		0.69767	0.19171	1	39799			41052	12535	23791	23792	49848	49848					0.03661679284937236
RWMHFLIL	8	Unmodified	_RWMHFLIL_					0	0	0		ENST00000393346.7_1_11:85723404-85725959:-|nuORF	ENST00000393346.7_1_11:85723404-85725959:-|nuORF	ENST00000393346.7_1_11:85723404-85725959:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3121948242188	2	558.312772	1114.61099	-0.1615	-9.0166E-05	-0.75864	-0.00042356	-0.92014	-0.00051372	558.3122664850567	25.276	0.81933	25.244	24.862	25.682	-0.031408					59	28	3	0	0	0	0.42758	1	3958	3958		13.508	0.63528	1	234990			41053	10044	23792	23793	49849	49849					0.05826993804316771
RWPHEPFF	8	Unmodified	_RWPHEPFF_					0	0	0			REV__ENST00000595077.1_1_19:18701561-18701744:+|nuORF	REV__ENST00000595077.1_1_19:18701561-18701744:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7423095703125	2	558.274701	1114.53485	0.34857	0.0001946	-3.453	-0.0019277	-3.1045	-0.0017331	558.2726209065571	79.576	0.59269	79.576	79.388	79.981	0					30	22	2	0	0	0	0.34319	1	20594	20594		5.7604	0	1	85125	+		41054	22589	23793	23794	49850	49850					-0.0178368677150047
RWPKKSAEF	9	Unmodified	_RWPKKSAEF_					0	0	0		ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.814208984375	2	574.81419	1147.61383	0.057765	3.3204E-05	0.070046	4.0264E-05	0.12781	7.3468E-05	574.8139938458735	23.356	1.3463	23.356	23.021	24.367	0					96	46	3	0	0	0	0.22215	3	3451	3451;3501;3573		20.415	8.2992	1	203490			41055	8671	23794	23795	49851;49852;49853	49851					0.04592540462795114
RWPKKSAEF	9	Unmodified	_RWPKKSAEF_					0	0	0		ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.8142700195312	2	574.81419	1147.61383	0.2547	0.00014641	-0.31802	-0.0001828	-0.063317	-3.6395E-05	574.8138248469655	23.61	1.4089	23.538	23.061	24.47	-0.072559					111	48	3	0	0	0	0.22215	3	3485	3485;3536;3614		20.415	8.7742	1	142240			41056	8671	23794	23795	49854;49855;49856	49854					0.04592540462795114
RWPKKSAEF	9	Unmodified	_RWPKKSAEF_					0	0	0		ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.8142700195312	2	574.81419	1147.61383	0.26762	0.00015383	-0.27742	-0.00015947	-0.0098038	-5.6354E-06	574.813854075793	23.591	1.4219	23.553	23.115	24.537	-0.038927					114	49	3	0	0	0	0.18208	2	3620	3568;3620		26.268	14.027	1	138790			41057	8671	23794	23795	49857;49858	49858					0.04592540462795114
RWPKKSAEFLL	11	Unmodified	_RWPKKSAEFLL_					0	0	0		ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.9345703125	3	458.934595	1373.78196	0.24297	0.00011151	0.20843	9.5657E-05	0.4514	0.00020716	458.9344787476406	44.797	2.4349	44.865	43.645	46.08	0.068569					193	88	3	0	0	0	0.2876	1	9966	9966		23.34	3.3528	1	1087700			41058	8671	23795	23796	49859	49859					0.11001602656597242
RWPKKSAEFLL	11	Unmodified	_RWPKKSAEFLL_					0	0	0		ENST00000582935.1_1_18:47016781-47017264:-|nuORF;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	ENST00000582935.1_1_18:47016781-47017264:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2691345214844	3	458.934595	1373.78196	0.30651	0.00014067	0.15357	7.048E-05	0.46008	0.00021115	458.93443708500456	44.786	2.4571	44.862	43.727	46.184	0.075047					194	90	4	0	0	0	0.33432	1	10126	10126		19.144	6.288	1	952280			41059	8671	23795	23796	49860	49860					0.11001602656597242
RWPMRYDQWWE	11	Unmodified	_RWPMRYDQWWE_					0	0	0		ENSG00000126107|ENST00000372172|HECTD3;nc|ENSG00000126107|Q5T447-2|HECTD3	ENSG00000126107|ENST00000372172|HECTD3	ENSG00000126107|ENST00000372172|HECTD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.55792236328125	4	413.941131	1651.73542	-0.36711	-0.00015196	4.46	0.0018462	4.0929	0.0016942	414.19384123574616	13.269	0.16232	13.269	13.147	13.309	0					6	5	2	0	0	0	0.33352	1	385	385		0.08335	0.08335	1	14666			41060	3258	23796	23797	49861	49861					-0.06438205237009242
RWRFLLQC	8	Unmodified	_RWRFLLQC_					0	0	0		ENSG00000008405|ENST00000008527|CRY1	ENSG00000008405|ENST00000008527|CRY1	ENSG00000008405|ENST00000008527|CRY1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.303466796875	2	561.305478	1120.5964	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.48	1	112.47	111.97	112.97	-0.015625								0	0	0	0.37664	1	29259	29259		2.5775	1.2479	1				41061	397	23797	23798	49862	49862					0.04092921656160797
RWRFYWKMVYE	11	Unmodified	_RWRFYWKMVYE_					0	0	0		ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2797241210938	3	555.278256	1662.81294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.68	1	116.71	116.21	117.21	0.020988								0	0	0	0.3823	1	30270	30270		0	0	1				41062	8325	23798	23799	49863	49863					0.00804432699192148
RWRFYWKMVYE	11	Unmodified	_RWRFYWKMVYE_					0	0	0		ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2777709960938	3	555.278256	1662.81294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.03	1	118.05	117.55	118.55	0.023476								0	0	0	0.3823	1	30576	30576		0	0	1				41063	8325	23798	23799	49864	49864					0.00804432699192148
RWRKLFWRLKM	11	Unmodified	_RWRKLFWRLKM_					0	0	0			REV__nc|ENSG00000149639|O94964-4|MTCL2	REV__nc|ENSG00000149639|O94964-4|MTCL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.9853515625	3	540.653769	1618.93948	0.15257	8.2489E-05	0.52894	0.00028598	0.68152	0.00036846	540.6540490446974	97.584	0.61178	97.584	97.379	97.991	0					114	66	2	0	0	0	0.33348	1	26164	26164		0.40827	0.40827	1	226910	+		41064	16480	23799	23800	49865	49865					0.15476403714978915
RWRMHKKKHKR	11	Unmodified	_RWRMHKKKHKR_					0	0	0			REV__ENSG00000205857|ENST00000382119|NANOGNB	REV__ENSG00000205857|ENST00000382119|NANOGNB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.9849243164062	3	530.9844	1589.93137	0.30539	0.00016216	0.92337	0.0004903	1.2288	0.00065245	530.9851417289207	95.177	1.2638	95.177	94.166	95.43	0					269	114	4	0	0	0	0.48486	3	25340	25340;25379;25420		0.094841	0.094841	1	389000	+		41065	19005	23800	23801	49866;49867;49868	49866					0.1600026951819018
RWRMHKKKHKR	11	Unmodified	_RWRMHKKKHKR_					0	0	0			REV__ENSG00000205857|ENST00000382119|NANOGNB	REV__ENSG00000205857|ENST00000382119|NANOGNB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.296142578125	3	530.9844	1589.93137	0.30539	0.00016216	0.92337	0.0004903	1.2288	0.00065245	530.9851417289207	95.177	1.2638	95.177	94.166	95.43	0					269	114	4	0	0	0	0.33346	1	25210	25210		0.50596	0.50596	1	389000	+		41066	19005	23800	23801	49869	49869					0.1600026951819018
RWRMHKKKHKR	11	Unmodified	_RWRMHKKKHKR_					0	0	0			REV__ENSG00000205857|ENST00000382119|NANOGNB	REV__ENSG00000205857|ENST00000382119|NANOGNB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.9849853515625	3	530.9844	1589.93137	0.28957	0.00015375	0.90586	0.000481	1.1954	0.00063475	531.3187140174812	95.069	1.3142	95.152	94.042	95.356	0.082779					206	113	3	0	0	0	0.48173	5	25275	25275;25322;25364;25400;25440		0.50596	0.41111	1	525680	+		41067	19005	23800	23801	49870;49871;49872;49873;49874	49870					0.1600026951819018
RWRMHKKKHKR	11	Unmodified	_RWRMHKKKHKR_					0	0	0			REV__ENSG00000205857|ENST00000382119|NANOGNB	REV__ENSG00000205857|ENST00000382119|NANOGNB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.9852905273438	3	530.9844	1589.93137	0.55946	0.00029707	0.62802	0.00033347	1.1875	0.00063053	530.985021920457	95.015	1.2693	95.013	94.072	95.341	-0.0020142					230	110	3	0	0	0	0.48212	4	25449	25332;25372;25411;25449		0.45452	0.45452	1	662560	+		41068	19005	23800	23801	49875;49876;49877;49878	49878					0.1600026951819018
RWRMHKKKHKR	11	Unmodified	_RWRMHKKKHKR_					0	0	0			REV__ENSG00000205857|ENST00000382119|NANOGNB	REV__ENSG00000205857|ENST00000382119|NANOGNB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3194580078125	3	530.9844	1589.93137	0.55946	0.00029707	0.62802	0.00033347	1.1875	0.00063053	530.985021920457	95.015	1.2693	95.013	94.072	95.341	-0.0020142					230	110	3	0	0	0	0.33352	1	25411	25411		0	0	1	662560	+		41069	19005	23800	23801	49879	49879					0.1600026951819018
RWRMHKKKHKR	11	Unmodified	_RWRMHKKKHKR_					0	0	0			REV__ENSG00000205857|ENST00000382119|NANOGNB	REV__ENSG00000205857|ENST00000382119|NANOGNB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	530.9844	1589.93137	0.28957	0.00015375	0.90586	0.000481	1.1954	0.00063475	531.3187140174812	95.069	1.3142	95.152	94.042	95.356	0.082779	0.037491	0.00012906	NaN	0.50596	206	113	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	525680	+		41070	19005	23800	23801							0.1600026951819018
RWRQSVSP	8	Unmodified	_RWRQSVSP_					0	0	0			REV__ENST00000522240.1_1_8:87526921-87540804:+|nuORF	REV__ENST00000522240.1_1_8:87526921-87540804:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.282958984375	2	508.275232	1014.53591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.539	1	30.566	30.066	31.066	0.027157								0	0	0	0.33432	1	5596	5596		21.747	1.293	1		+		41071	21913	23801	23802	49880	49880					0.02922527597422686
RWRRRKKRDRP	11	Unmodified	_RWRRRKKRDRP_					0	0	0			REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	REV__ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7974243164062	3	537.329335	1608.96618	0.28968	0.00015565	0.20422	0.00010973	0.4939	0.00026539	537.3294038158206	94.971	0.43118	95.053	94.669	95.101	0.082771					51	34	2	0	0	0	0.33352	1	25365	25365		0.08335	0.08335	1	139610	+		41072	22259	23802	23803	49881	49881					0.18605228650517347
RWRRWNRFNRR	11	Unmodified	_RWRRWNRFNRR_					0	0	0		nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-4|CACNA1D	nc|ENSG00000157388|Q01668-4|CACNA1D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.3180541992188	3	568.317318	1701.93013	0.24642	0.00014004	0.37166	0.00021122	0.61808	0.00035127	568.3175987868233	39.014	0.47075	39.107	38.836	39.307	0.09267					25	16	2	0	0	0	0.48486	1	8192	8192		0.094841	0	1	291760			41073	5302	23803	23804	49882	49882					0.10723771473658417
RWRRWNRFNRR	11	Unmodified	_RWRRWNRFNRR_					0	0	0		nc|ENSG00000157388|Q01668-4|CACNA1D;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-4|CACNA1D	nc|ENSG00000157388|Q01668-4|CACNA1D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	568.317318	1701.93013	0.406	0.00023074	0.9888	0.00056195	1.3948	0.00079269	568.6522871738605	39.029	0.44299	39.129	38.953	39.396	0.099407	0.010757	0.00059479	NaN	0.094841	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340950			41074	5302	23803	23804							0.10723771473658417
RWRWQRLRRRL	11	Unmodified	_RWRWQRLRRRL_					0	0	0			REV__ENST00000341285.7_2_4:15656858-15657005:-|nuORF	REV__ENST00000341285.7_2_4:15656858-15657005:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.6704711914062	3	561.341464	1681.00256	-0.1163	-6.5283E-05	-2.7493	-0.0015433	-2.8656	-0.0016086	561.339704829235	99.537	0.046265	99.537	99.51	99.556	0					6	5	2	0	0	0	0.33352	1	26622	26622		0	0	1	40169	+		41075	20117	23804	23805	49883	49883					0.1893010554722423
RWRWRWSRMLR	11	Unmodified	_RWRWRWSRMLR_					0	0	0			REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF	REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.818603515625	3	563.644155	1687.91064	0.10351	5.8342E-05	0.56471	0.0003183	0.66822	0.00037664	563.9788278805788	14.738	0.59175	14.633	14.396	14.988	-0.10466					60	20	5	0	0	0	0.33352	1	881	881		0.08335	0.08335	1	1250800	+		41076	20800	23805	23806	49884	49884					0.09419679138545689
RWRWRWSRMLR	11	Unmodified	_RWRWRWSRMLR_					0	0	0			REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF	REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	563.644155	1687.91064	-0.032132	-1.8111E-05	0.63181	0.00035611	0.59968	0.000338	563.6446112777337	14.541	0.56456	14.541	14.335	14.9	0	-0.0822	-6.4514E-05	NaN	0.08335	68	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1173000	+		41077	20800	23805	23806							0.09419679138545689
RWRWRWSRMLR	11	Unmodified	_RWRWRWSRMLR_					0	0	0			REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF	REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	563.644155	1687.91064	-0.052227	-2.9437E-05	0.78552	0.00044275	0.73329	0.00041331	563.644675785521	14.76	0.55681	14.695	14.455	15.012	-0.065559	0.071899	0.0001954	NaN	0.08335	70	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	988710	+		41078	20800	23805	23806							0.09419679138545689
RWSQVFSLE	9	Unmodified	_RWSQVFSLE_					0	0	0		ENSG00000103540|ENST00000694978|CCP110;nc|ENSG00000103540|O43303|CCP110	ENSG00000103540|ENST00000694978|CCP110	ENSG00000103540|ENST00000694978|CCP110	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.2915649414062	2	576.29583	1150.57711	0.32686	0.00018837	1.5959	0.00091971	1.9228	0.0011081	576.8000761800407	92.202	1.0236	92.291	91.584	92.608	0.089195					132	68	4	0	0	0	0.28128	1	24331	24331		11.64	4.9171	1	413410			41079	1841	23806	23807	49885	49885					0.007842438462375867
RWTLRLWPRRW	11	Unmodified	_RWTLRLWPRRW_					0	0	0			REV__ENST00000465475.5_1_3:124802831-124839525:-|nuORF	REV__ENST00000465475.5_1_3:124802831-124839525:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.78515625	4	407.237656	1624.92152	-0.33667	-0.00013711	-0.77085	-0.00031392	-1.1075	-0.00045102	407.2374707477429	25.48	1.3842	25.449	24.988	26.372	-0.031408					125	49	5	0	0	0	0.33334	1	4315	4315		1.2148	0.10508	1	1845300	+		41080	21274	23807	23808	49886	49886					0.13405404784452912
RWVFKRRLG	9	Unmodified	_RWVFKRRLG_					0	0	0		ENSG00000228607|ENST00000453129|CLDN25	ENSG00000228607|ENST00000453129|CLDN25	ENSG00000228607|ENST00000453129|CLDN25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.91827392578125	3	406.58412	1216.73053	-0.087398	-3.5535E-05	-0.21024	-8.548E-05	-0.29764	-0.00012101	406.5840517640603	103.16	0.21548	103.16	102.96	103.18	-0.0011063					32	25	2	0	0	0	0.26228	1	27426	27426		0.26902	0	1	4147800			41081	8461	23808	23809	49887	49887					0.1308332347321084
RWVIYNDHK	9	Unmodified	_RWVIYNDHK_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8841247558594	3	410.884123	1229.63054	0.42517	0.0001747	0.18757	7.707E-05	0.61275	0.00025177	410.8841988815143	20.407	1.1669	20.355	20.037	21.204	-0.052912					129	41	4	0	0	0	0.33112	1	2466	2466		4.1895	0.86986	1	812820			41082	728	23809	23810	49888	49888					0.02491041348730505
RWVLALKEET	10	Unmodified	_RWVLALKEET_					0	0	0		ENST00000519402.5_1_5:156607865-156667213:+|nuORF;ENSG00000113263|ENST00000422843|ITK	ENST00000519402.5_1_5:156607865-156667213:+|nuORF	ENST00000519402.5_1_5:156607865-156667213:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.8284301757812	2	622.853512	1243.69247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.156	1	12.156	11.656	12.656	0								0	0	0	0.38202	1	42	42		0.40072	0	1				41083	2484	23810	23811	49889	49889					0.0803734797721063
RWVQFKRFV	9	Unmodified	_RWVQFKRFV_					0	0	0			REV__ENST00000290730.11_1_22:24179058-24180975:-|nuORF	REV__ENST00000290730.11_1_22:24179058-24180975:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3687744140625	2	633.366924	1264.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.32	1	112.32	111.82	112.82	0								0	0	0	0.2672	1	29198	29198		0.52476	0.066424	1		+		41084	19752	23811	23812	49890	49890					0.09752501379057321
RWVQFKRFV	9	Unmodified	_RWVQFKRFV_					0	0	0			REV__ENST00000290730.11_1_22:24179058-24180975:-|nuORF	REV__ENST00000290730.11_1_22:24179058-24180975:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3681640625	2	633.366924	1264.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.67	1	115.69	115.19	116.19	0.018738								0	0	0	0.2672	1	30039	30039		0.52476	0.066424	1		+		41085	19752	23811	23812	49891	49891					0.09752501379057321
RWVQFKRFV	9	Unmodified	_RWVQFKRFV_					0	0	0			REV__ENST00000290730.11_1_22:24179058-24180975:-|nuORF	REV__ENST00000290730.11_1_22:24179058-24180975:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3685913085938	2	633.366924	1264.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.8	1	115.82	115.32	116.32	0.018738								0	0	0	0.2672	1	30069	30069		0.52476	0.066424	1		+		41086	19752	23811	23812	49892	49892					0.09752501379057321
RWVRALNFV	9	Unmodified	_RWVRALNFV_					0	0	0			REV__ENST00000581241.5_1_17:80206597-80211051:-|nuORF	REV__ENST00000581241.5_1_17:80206597-80211051:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.837890625	2	580.838	1159.66145	0.13346	7.752E-05	-0.22203	-0.00012896	-0.088563	-5.1441E-05	580.8378191516152	18.402	0.65616	18.402	18.158	18.814	0					49	22	4	0	0	0	0.33018	1	1951	1951		4.3292	0	1	307690	+		41087	22485	23812	23813	49893	49893					0.08800239453626091
RWVRALNFV	9	Unmodified	_RWVRALNFV_					0	0	0			REV__ENST00000581241.5_1_17:80206597-80211051:-|nuORF	REV__ENST00000581241.5_1_17:80206597-80211051:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.837890625	2	580.838	1159.66145	0.11104	6.4496E-05	-0.10466	-6.0791E-05	0.0063783	3.7048E-06	580.8378688594003	18.574	0.54164	18.456	18.242	18.784	-0.11739					46	18	3	0	0	0	0.33018	1	1998	1998		4.3292	0	1	273920	+		41088	22485	23812	23813	49894	49894					0.08800239453626091
RWVRALNFV	9	Unmodified	_RWVRALNFV_					0	0	0			REV__ENST00000581241.5_1_17:80206597-80211051:-|nuORF	REV__ENST00000581241.5_1_17:80206597-80211051:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8377685546875	2	580.838	1159.66145	-0.067398	-3.9147E-05	-0.04596	-2.6695E-05	-0.11336	-6.5843E-05	580.8379048746107	18.585	0.53291	18.527	18.313	18.846	-0.058174					40	18	3	0	0	0	0.34681	1	2022	2022		1.8442	0	1	315330	+		41089	22485	23812	23813	49895	49895					0.08800239453626091
RWWEHRLLWI	10	Unmodified	_RWWEHRLLWI_					0	0	0		ENST00000563368.5_1_15:75650962-75652298:-|nuORF;ENST00000564785.5_1_15:75650962-75651301:-|nuORF	ENST00000563368.5_1_15:75650962-75652298:-|nuORF	ENST00000563368.5_1_15:75650962-75652298:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7391052246094	3	498.942084	1493.80442	0.33931	0.00016929	3.5732	0.0017828	3.9125	0.0019521	499.2780653566599	49.388	0.3824	49.433	49.238	49.621	0.044888					30	13	3	0	0	0	0.32068	1	11346	11346		3.5871	1.1523	1	243170			41090	11929	23813	23814	49896	49896					0.07727246844888214
RWWRLRQQPNR	11	Unmodified	_RWWRLRQQPNR_					0	0	0			REV__ENST00000519528.1_1_8:103299768-103305927:-|nuORF	REV__ENST00000519528.1_1_8:103299768-103305927:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.6300048828125	3	532.630791	1594.87055	0.4199	0.00022365	-1.6649	-0.00088677	-1.245	-0.00066312	532.6298308645542	112.35	0.14066	112.37	112.34	112.48	0.0131					17	16	2	0	0	0	0.48486	1	29245	29245		0.094841	0.094841	1	46678	+		41091	21873	23814	23815	49897	49897					0.09690455739632853
RWYLGPRF	8	Unmodified	_RWYLGPRF_					0	0	0			REV__nc|ENSG00000103546|P23975-3|SLC6A2	REV__nc|ENSG00000103546|P23975-3|SLC6A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7793579101562	2	547.798343	1093.58213	0.43878	0.00024036	-4.351	-0.0023835	-3.9122	-0.0021431	547.7970258887862	80.31	0.27986	80.375	80.241	80.52	0.065102					16	10	2	0	0	0	0.42758	1	20878	20878		13.508	0.46542	1	114680	+		41092	14380	23815	23816	49898	49898					0.03908592499487895
RWYVDRWSKL	10	Unmodified	_RWYVDRWSKL_					0	0	0			REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7680358886719	3	470.254328	1407.74115	-0.12497	-5.8766E-05	-1.4707	-0.00069159	-1.5956	-0.00075036	470.25370146745576	14.755	0.44416	14.65	14.516	14.96	-0.10466					26	15	3	0	0	0	0.32137	1	908	908		1.7423	0	1	84996	+		41093	17022	23816	23817	49899	49899					0.053592613369801256
RYAALRELI	9	Unmodified	_RYAALRELI_					0	0	0		ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	ENSG00000142039|ENST00000269967|CCDC97	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8302612304688	2	552.82984	1103.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.376	1	47.376	46.876	47.876	0								0	0	0	0.21673	1	10753	10753		17.113	3.2068	1				41094	4420	23817	23818	49900	49900					0.09745113496887825
RYAAQLPAL	9	Unmodified	_RYAAQLPAL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1;PELP1|p.P491Lfs*7|1|0.28|ENSG00000141456|chr17:4674620-4674620|G/-|frameshift_variant	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2823791503906	2	501.790184	1001.56581	0.53896	0.00027045	0.20102	0.00010087	0.73998	0.00037132	501.7903083221581	50.985	1.663	51.031	49.958	51.621	0.046574					98	61	3	0	0	0	0.019896	3	11881	11829;11881;11906		64.236	19.829	1	1265000			41095	4382	23818	23819	49901;49902;49903	49902					0.0650946654272957
RYAAQLPAL	9	Unmodified	_RYAAQLPAL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1;PELP1|p.P491Lfs*7|1|0.28|ENSG00000141456|chr17:4674620-4674620|G/-|frameshift_variant	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7904968261719	2	501.790184	1001.56581	0.58476	0.00029343	0.20529	0.00010301	0.79006	0.00039644	501.79041352170316	51.06	1.7194	51.07	50.027	51.746	0.0095673					102	64	3	0	0	0	0.015402	2	11909	11860;11909		71.134	26.727	1	1230300			41096	4382	23818	23819	49904;49905	49905					0.0650946654272957
RYAAQLPALF	10	Unmodified	_RYAAQLPALF_					0	0	0		ENSG00000141456|ENST00000572293|PELP1;PELP1|p.P491Lfs*7|1|0.28|ENSG00000141456|chr17:4674620-4674620|G/-|frameshift_variant	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.2898559570312	2	575.324391	1148.63423	0.47962	0.00027593	-2.349	-0.0013515	-1.8694	-0.0010755	575.3235528682407	65.842	0.66565	65.842	65.518	66.183	0					29	23	2	0	0	0	0.30586	1	16435	16435		19.257	7.7623	1	143050			41097	4382	23819	23820	49906	49906					0.06585711122579596
RYAEAVQLL	9	Unmodified	_RYAEAVQLL_					0	0	0		ENSG00000197557|ENST00000355689|TTC30A;ENSG00000196659|ENST00000408939|TTC30B	ENSG00000197557|ENST00000355689|TTC30A	ENSG00000197557|ENST00000355689|TTC30A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8009643554688	2	531.800749	1061.58694	0.66803	0.00035526	-0.098113	-5.2177E-05	0.56991	0.00030308	531.8007410293601	51.243	1.1005	51.243	50.922	52.023	0					117	40	4	0	0	0	0.016571	2	11919	11919;11966		69.338	17.708	1	7586200			41098	7975	23820	23821	49907;49908	49907					0.058614318515992636
RYAEAVQLL	9	Unmodified	_RYAEAVQLL_					0	0	0		ENSG00000197557|ENST00000355689|TTC30A;ENSG00000196659|ENST00000408939|TTC30B	ENSG00000197557|ENST00000355689|TTC30A	ENSG00000197557|ENST00000355689|TTC30A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8009033203125	2	531.800749	1061.58694	0.42535	0.0002262	0.080723	4.2928E-05	0.50608	0.00026913	531.8008316815104	51.21	1.0743	51.257	50.957	52.032	0.046577					113	39	4	0	0	0	0.027957	2	11911	11911;11956		61.09	15.39	1	7878500			41099	7975	23820	23821	49909;49910	49909					0.058614318515992636
RYAEAVQLL	9	Unmodified	_RYAEAVQLL_					0	0	0		ENSG00000197557|ENST00000355689|TTC30A;ENSG00000196659|ENST00000408939|TTC30B	ENSG00000197557|ENST00000355689|TTC30A	ENSG00000197557|ENST00000355689|TTC30A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8009643554688	2	531.800749	1061.58694	0.57332	0.00030489	-0.087428	-4.6494E-05	0.48589	0.0002584	531.8007099145567	51.273	1.1883	51.282	50.937	52.126	0.0095634					122	44	4	0	0	0	0.027957	2	11930	11930;11977		61.09	15.39	1	7858500			41100	7975	23820	23821	49911;49912	49911					0.058614318515992636
RYAEIFQDL	9	Unmodified	_RYAEIFQDL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.796142578125	2	577.795663	1153.57677	-0.01962	-1.1336E-05	0.94488	0.00054595	0.92526	0.00053461	577.79584202253	61.716	0.90126	61.707	61.451	62.353	-0.0085526					78	32	3	0	0	0	0.069258	1	15198	15198		45.74	11.338	1	622690			41101	12810	23821	23822	49913	49913					0.006128241263922973
RYAIAFPLI	9	Unmodified	_RYAIAFPLI_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.31884765625	2	532.318577	1062.6226	0.39832	0.00021203	0.28213	0.00015019	0.68046	0.00036222	532.3186829724156	75.425	0.83365	75.425	75.043	75.877	0					78	29	4	0	0	0	0.062246	2	19360	19360;19410		48.346	23.672	1	1505900			41102	3097	23822	23823	49914;49915	49914					0.0937951409928246
RYAIAFPLI	9	Unmodified	_RYAIAFPLI_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.318603515625	2	532.318577	1062.6226	0.38766	0.00020636	0.41827	0.00022265	0.80593	0.00042901	532.3187435635898	75.433	0.89172	75.485	75.051	75.943	0.052361					89	30	5	0	0	0	0.079066	2	19397	19347;19397		42.095	11.87	1	1632500			41103	3097	23822	23823	49916;49917	49917					0.0937951409928246
RYAIAFPLI	9	Unmodified	_RYAIAFPLI_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3187255859375	2	532.318577	1062.6226	0.60164	0.00032026	0.16555	8.8124E-05	0.76719	0.00040839	532.3186579551568	75.504	0.72153	75.473	75.135	75.857	-0.031487					79	26	4	0	0	0	0.062246	4	19369	19369;19402;19425;19440		48.346	23.672	1	1576100			41104	3097	23822	23823	49918;49919;49920;49921	49918					0.0937951409928246
RYALQMEQL	9	Oxidation (M)	_RYALQM(Oxidation (M))EQL_		RYALQM(1)EQL		RYALQM(170)EQL	0	0	1		ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENSG00000111057|ENST00000388835|KRT18	ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENST00000411618.1_1_9:30799684-30799825:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.295166015625	2	584.294973	1166.57539	0.11106	6.4891E-05	0.52293	0.00030554	0.63399	0.00037044	584.2950612566938	41.154	0.78679	41.154	40.768	41.555	0					106	28	5	0	0	0	1.6536E-07	3	8838	8794;8838;8886		173.69	101.76	1	7803800			41105	2345	23823	23824	49922;49923;49924	49923		289			-0.0012313323402395326
RYALQMEQL	9	Oxidation (M)	_RYALQM(Oxidation (M))EQL_		RYALQM(1)EQL		RYALQM(200)EQL	0	0	1		ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENSG00000111057|ENST00000388835|KRT18	ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENST00000411618.1_1_9:30799684-30799825:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2951049804688	2	584.294973	1166.57539	0.34509	0.00020164	0.26118	0.00015261	0.60628	0.00035424	584.2949071972812	40.798	0.98391	40.891	40.557	41.541	0.09267					136	36	5	0	0	0	5.4465E-12	4	8736	8691;8736;8786;8835		201.57	129.65	1	7581600			41106	2345	23823	23824	49925;49926;49927;49928	49926		289			-0.0012313323402395326
RYALQMEQL	9	Oxidation (M)	_RYALQM(Oxidation (M))EQL_		RYALQM(1)EQL		RYALQM(170)EQL	0	0	1		ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENSG00000111057|ENST00000388835|KRT18	ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENST00000411618.1_1_9:30799684-30799825:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.2952270507812	2	584.294973	1166.57539	0.21275	0.00012431	0.36746	0.00021471	0.58022	0.00033902	584.2949909810181	40.733	0.94526	40.832	40.505	41.451	0.099403					122	34	5	0	0	0	1.6536E-07	4	8762	8664;8714;8762;8813		173.69	101.76	1	8689000			41107	2345	23823	23824	49929;49930;49931;49932	49931		289			-0.0012313323402395326
RYAMTVWYF	9	Oxidation (M)	_RYAM(Oxidation (M))TVWYF_		RYAM(1)TVWYF		RYAM(46)TVWYF	0	0	1		ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.7946166992188	2	626.794609	1251.57467	0.61526	0.00038564	-0.38271	-0.00023988	0.23255	0.00014576	626.7942360865035	64.243	1.1634	64.243	63.746	64.91	0					99	37	4	0	0	0	0.069366	2	15990	15932;15990		45.7	24.515	1	1316100			41108	3429	23824	23825	49933;49934	49934		434			-0.04105927883097138
RYAMTVWYF	9	Oxidation (M)	_RYAM(Oxidation (M))TVWYF_		RYAM(1)TVWYF		RYAM(56)TVWYF	0	0	1		ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.7944946289062	2	626.794609	1251.57467	0.19042	0.00011936	0.035936	2.2524E-05	0.22636	0.00014188	626.7945247732401	64.134	1.0317	64.227	63.848	64.88	0.09288					101	37	4	0	0	0	0.04299	2	15938	15886;15938		55.503	36.246	1	1267500			41109	3429	23824	23825	49935;49936	49936		434			-0.04105927883097138
RYAMTVWYF	9	Oxidation (M)	_RYAM(Oxidation (M))TVWYF_		RYAM(1)TVWYF		RYAM(46)TVWYF	0	0	1		ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.7947998046875	2	626.794609	1251.57467	0.40729	0.00025529	-0.29159	-0.00018277	0.11571	7.2524E-05	626.7943589238537	64.305	1.1164	64.296	63.745	64.862	-0.0095367					100	40	4	0	0	0	0.069366	1	15923	15923		45.7	20.3	1	1198600			41110	3429	23824	23825	49937	49937		434			-0.04105927883097138
RYAPWGIY	8	Unmodified	_RYAPWGIY_					0	0	0			REV__ENSG00000196090|ENST00000373187|PTPRT	REV__ENSG00000196090|ENST00000373187|PTPRT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7785034179688	2	513.263802	1024.51305	0.37247	0.00019118	-0.79976	-0.00041049	-0.42729	-0.00021931	513.2633604043199	36.669	0.59824	36.756	36.464	37.062	0.087406					48	21	3	0	0	0	0.31375	1	7515	7515		19.439	10.092	1	411900	+		41111	18613	23825	23826	49938	49938					0.0017750847994193464
RYAQNVAFF	9	Unmodified	_RYAQNVAFF_					0	0	0		ENSG00000169740|ENST00000374433|ZNF32	ENSG00000169740|ENST00000374433|ZNF32	ENSG00000169740|ENST00000374433|ZNF32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.285400390625	2	558.285266	1114.55598	0.37975	0.00021201	-0.12689	-7.0842E-05	0.25285	0.00014116	558.2850820778494	52.919	0.88669	52.919	52.63	53.516	0					84	32	4	0	0	0	0.0046874	3	12470	12424;12470;12523		88.904	46.809	1	3106600			41112	6381	23826	23827	49939;49940;49941	49940					0.003282785373585284
RYAQNVAFF	9	Unmodified	_RYAQNVAFF_					0	0	0		ENSG00000169740|ENST00000374433|ZNF32	ENSG00000169740|ENST00000374433|ZNF32	ENSG00000169740|ENST00000374433|ZNF32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.285400390625	2	558.285266	1114.55598	0.59041	0.00032962	-0.22652	-0.00012646	0.36389	0.00020316	558.2849186583979	52.85	0.84605	52.901	52.657	53.503	0.050575					88	30	4	0	0	0	0.0037552	2	12452	12403;12452		96.285	54.19	1	2937500			41113	6381	23826	23827	49942;49943	49943					0.003282785373585284
RYAQNVAFF	9	Unmodified	_RYAQNVAFF_					0	0	0		ENSG00000169740|ENST00000374433|ZNF32	ENSG00000169740|ENST00000374433|ZNF32	ENSG00000169740|ENST00000374433|ZNF32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2852172851562	2	558.285266	1114.55598	0.31401	0.00017531	-0.065601	-3.6624E-05	0.24841	0.00013868	558.2850739683871	53.107	0.95832	53.097	52.812	53.771	-0.0096054					100	35	4	0	0	0	0.0037552	2	12529	12482;12529		96.285	54.19	1	3266100			41114	6381	23826	23827	49944;49945	49945					0.003282785373585284
RYASINAHL	9	Unmodified	_RYASINAHL_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENST00000606299.1_1_5:148886668-148892751:-|nuORF	nc|ENSG00000113712|P48729-3|CSNK1A1;ENST00000606299.1_1_5:148886668-148892751:-|nuORF	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7830810546875	2	522.78289	1043.55123	0.66875	0.00034961	-0.080289	-4.1974E-05	0.58846	0.00030764	522.782776807709	32.168	1.2451	32.168	31.9	33.145	0					111	44	4	0	0	0	0.0028032	3	6104	6060;6104;6148		103.82	51.555	1	3465800			41115	2523;12296	23827	23828	49946;49947;49948	49947					0.031193943946163927
RYASINAHL	9	Unmodified	_RYASINAHL_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENST00000606299.1_1_5:148886668-148892751:-|nuORF	nc|ENSG00000113712|P48729-3|CSNK1A1;ENST00000606299.1_1_5:148886668-148892751:-|nuORF	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7830200195312	2	522.78289	1043.55123	0.69734	0.00036456	-0.1016	-5.3117E-05	0.59573	0.00031144	522.7827799827687	32.085	1.2254	32.127	31.852	33.078	0.042366					99	43	4	0	0	0	0.0048951	2	6076	6031;6076		87.258	34.99	1	3637100			41116	2523;12296	23827	23828	49949;49950	49950					0.031193943946163927
RYASINAHL	9	Unmodified	_RYASINAHL_					0	0	0		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENST00000606299.1_1_5:148886668-148892751:-|nuORF	nc|ENSG00000113712|P48729-3|CSNK1A1;ENST00000606299.1_1_5:148886668-148892751:-|nuORF	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7831420898438	2	522.78289	1043.55123	0.47595	0.00024882	0.11828	6.1835E-05	0.59423	0.00031065	522.782878675389	32.087	1.1914	32.128	31.864	33.055	0.040993					100	42	4	0	0	0	0.0073901	2	6084	6031;6084		83.429	27.252	1	3499600			41117	2523;12296	23827	23828	49951;49952	49952					0.031193943946163927
RYASINTHL	9	Unmodified	_RYASINTHL_					0	0	0		ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENSG00000213923|ENST00000396832|CSNK1E	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7886962890625	2	537.788173	1073.56179	0.28928	0.00015557	0.2188	0.00011767	0.50808	0.00027324	537.7883557294412	31.374	1.4934	31.374	31.062	32.556	0					99	53	3	0	0	0	0.003929	3	5867	5820;5867;5918		94.909	42.64	1	8334000			41118	4392	23828	23829	49953;49954;49955	49954					0.027953770490512397
RYASINTHL	9	Unmodified	_RYASINTHL_					0	0	0		ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENSG00000213923|ENST00000396832|CSNK1E	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7880249023438	2	537.788173	1073.56179	0.16558	8.9044E-05	0.25167	0.00013535	0.41725	0.00022439	537.7884192186742	31.364	1.3596	31.406	31.106	32.465	0.042366					96	48	4	0	0	0	0.011547	4	5820	5820;5866;5911;5973		77.049	33.19	1	8454300			41119	4392	23828	23829	49956;49957;49958;49959	49956					0.027953770490512397
RYASINTHL	9	Unmodified	_RYASINTHL_					0	0	0		ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENSG00000213923|ENST00000396832|CSNK1E	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7886962890625	2	537.788173	1073.56179	0.45917	0.00024694	0.017887	9.6192E-06	0.47706	0.00025656	537.7882922391397	31.278	1.523	31.319	31.042	32.565	0.040991					108	54	4	0	0	0	0.00082904	3	5832	5832;5876;5939		124.95	63.596	1	8560900			41120	4392	23828	23829	49960;49961;49962	49960					0.027953770490512397
RYASSPMSSF	10	Unmodified	_RYASSPMSSF_					0	0	0			REV__ENST00000564258.5_1_15:41099486-41099654:+|nuORF	REV__ENST00000564258.5_1_15:41099486-41099654:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3272705078125	2	566.758223	1131.50189	0.47023	0.0002665	-3.511	-0.0019899	-3.0408	-0.0017234	566.7569014810199	51.046	0.10325	51.055	51.016	51.119	0.0095634					5	3	2	0	0	0	0.3144	1	11864	11864		13.042	1.4022	1	127180	+		41121	22338	23829	23830	49963	49963					-0.0585968167649753
RYAVEILTW	9	Unmodified	_RYAVEILTW_					0	0	0		ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	ENSG00000024048|ENST00000372901|UBR2	ENSG00000024048|ENST00000372901|UBR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8164672851562	2	575.816399	1149.61824	0.25531	0.00014701	0.16046	9.2397E-05	0.41577	0.00023941	575.8164000677583	68.948	0.6311	68.948	68.708	69.339	0					54	22	3	0	0	0	0.015924	1	17401	17401		70.332	24.311	1	541570			41122	529	23830	23831	49964	49964					0.04942004885697315
RYAVEILTW	9	Unmodified	_RYAVEILTW_					0	0	0		ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	ENSG00000024048|ENST00000372901|UBR2	ENSG00000024048|ENST00000372901|UBR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.816162109375	2	575.816399	1149.61824	0.45574	0.00026242	-0.01469	-8.4586E-06	0.44105	0.00025396	575.8163263027026	68.884	0.53623	68.955	68.781	69.318	0.071938					43	19	3	0	0	0	0.05341	2	17402	17402;17413		51.63	20.993	1	484510			41123	529	23830	23831	49965;49966	49965					0.04942004885697315
RYAVEILTW	9	Unmodified	_RYAVEILTW_					0	0	0		ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	ENSG00000024048|ENST00000372901|UBR2	ENSG00000024048|ENST00000372901|UBR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8165893554688	2	575.816399	1149.61824	0.23367	0.00013455	0.13929	8.0205E-05	0.37296	0.00021476	575.816470458821	68.992	0.67157	68.973	68.766	69.438	-0.01915					42	23	3	0	0	0	0.037019	1	17416	17416		57.722	19.748	1	432870			41124	529	23830	23831	49967	49967					0.04942004885697315
RYAVEILTW	9	Unmodified	_RYAVEILTW_					0	0	0		ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	ENSG00000024048|ENST00000372901|UBR2	ENSG00000024048|ENST00000372901|UBR2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	575.816399	1149.61824	0.45574	0.00026242	-0.01469	-8.4586E-06	0.44105	0.00025396	575.8163263027026	68.884	0.53623	68.955	68.781	69.318	0.071938	-0.0033097	-0.00014054	NaN	70.332	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484510			41125	529	23830	23831							0.04942004885697315
RYAVIGADL	9	Unmodified	_RYAVIGADL_					0	0	0		ENSG00000205629|ENST00000399069|LCMT1;nc|ENSG00000205629|Q9UIC8-2|LCMT1;ENST00000572869.1_1_16:25162908-25186269:+|nuORF	ENSG00000205629|ENST00000399069|LCMT1	ENSG00000205629|ENST00000399069|LCMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2745361328125	2	489.274367	976.53418	0.4533	0.00022179	-0.13477	-6.5938E-05	0.31853	0.00015585	489.2742008277261	49.3	0.51971	49.3	49.022	49.542	0					48	18	3	0	0	0	0.088443	1	11365	11365		39.95	5.8473	1	544690			41126	8298	23831	23832	49968	49968					0.04497473788796924
RYAVIGADL	9	Unmodified	_RYAVIGADL_					0	0	0		ENSG00000205629|ENST00000399069|LCMT1;nc|ENSG00000205629|Q9UIC8-2|LCMT1;ENST00000572869.1_1_16:25162908-25186269:+|nuORF	ENSG00000205629|ENST00000399069|LCMT1	ENSG00000205629|ENST00000399069|LCMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2745056152344	2	489.274367	976.53418	0.18162	8.8862E-05	0.099833	4.8846E-05	0.28145	0.00013771	489.2742983341655	49.228	0.67207	49.26	48.983	49.655	0.032043					53	23	3	0	0	0	0.13748	1	11329	11329		32.786	0.4802	1	615020			41127	8298	23831	23832	49969	49969					0.04497473788796924
RYAVIGADL	9	Unmodified	_RYAVIGADL_					0	0	0		ENSG00000205629|ENST00000399069|LCMT1;nc|ENSG00000205629|Q9UIC8-2|LCMT1;ENST00000572869.1_1_16:25162908-25186269:+|nuORF	ENSG00000205629|ENST00000399069|LCMT1	ENSG00000205629|ENST00000399069|LCMT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	489.274367	976.53418	0.28047	0.00013723	0.20575	0.00010067	0.48622	0.0002379	489.27436563116527	49.318	0.54757	49.363	49.073	49.621	0.044891	0.055258	0.0001651	NaN	39.95	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	622300			41128	8298	23831	23832							0.04497473788796924
RYAYNISLKE	10	Unmodified	_RYAYNISLKE_					0	0	0		ENST00000481054.5_1_3:183861194-183861371:+|nuORF;ENST00000465218.2_1_3:183861194-183862728:+|nuORF	ENST00000481054.5_1_3:183861194-183861371:+|nuORF	ENST00000481054.5_1_3:183861194-183861371:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.5596008300781	3	419.559305	1255.65609	0.080105	3.3609E-05	0.30522	0.00012806	0.38533	0.00016167	419.55957583910174	24.529	1.2388	24.456	24.085	25.324	-0.072559					136	42	4	0	0	0	0.35624	1	3833	3833		11.518	1.9739	1	2770800			41129	10792	23832	23833	49970	49970					0.03848471080505078
RYDGQIAVF	9	Unmodified	_RYDGQIAVF_					0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7774047851562	2	534.777274	1067.53999	0.57761	0.00030889	-0.31752	-0.0001698	0.26009	0.00013909	535.2785844251092	51.302	0.75197	51.311	50.835	51.587	0.0095634					64	28	3	0	0	0	0.22674	1	11985	11985		17.113	3.2068	1	973850			41130	7276	23833	23834	49971	49971					0.008925723004495012
RYDGQIAVF	9	Unmodified	_RYDGQIAVF_					0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	534.777274	1067.53999	0.67443	0.00036067	-0.78366	-0.00041908	-0.10923	-5.8415E-05	535.2783857554921	51.261	0.66928	51.261	50.922	51.592	0	-0.016554	-0.00027905	NaN	22.736	71	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	966500			41131	7276	23833	23834							0.008925723004495012
RYDGQVAVF	9	Unmodified	_RYDGQVAVF_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1;ENST00000490869.1_1_X:47062096-47065733:+|nuORF	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7697143554688	2	527.769448	1053.52434	0.8835	0.00046628	-0.098157	-5.1804E-05	0.78534	0.00041448	527.7692583108517	45.805	0.49671	45.805	45.558	46.055	0					43	17	3	0	0	0	0.11461	2	10250	10250;10304		36.127	7.6402	1	935250			41132	3533	23834	23835	49972;49973	49972					-0.0002771421659417683
RYDGQVAVF	9	Unmodified	_RYDGQVAVF_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1;ENST00000490869.1_1_X:47062096-47065733:+|nuORF	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.769775390625	2	527.769448	1053.52434	0.56359	0.00029745	0.36884	0.00019466	0.93243	0.00049211	527.7695036256724	45.564	0.50746	45.624	45.418	45.926	0.059837					44	17	3	0	0	0	0.16283	2	10190	10190;10244		29.082	7.3349	1	1120400			41133	3533	23834	23835	49974;49975	49974					-0.0002771421659417683
RYDGQVAVF	9	Unmodified	_RYDGQVAVF_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1;ENST00000490869.1_1_X:47062096-47065733:+|nuORF	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7697143554688	2	527.769448	1053.52434	0.66126	0.00034899	0.14467	7.6352E-05	0.80592	0.00042534	527.7693964933312	45.594	0.46344	45.659	45.408	45.872	0.065048					41	16	3	0	0	0	0.16283	2	10181	10181;10232		29.082	9.8246	1	1056600			41134	3533	23834	23835	49976;49977	49976					-0.0002771421659417683
RYDIHWMIRRK	11	Unmodified	_RYDIHWMIRRK_					0	0	0			REV__ENSG00000181291|ENST00000631683|TMEM132E	REV__ENSG00000181291|ENST00000631683|TMEM132E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2474365234375	3	525.289266	1572.84597	0.54443	0.00028599	0.77579	0.00040751	1.3202	0.0006935	525.2893391043623	32.24	0.58503	32.294	31.994	32.579	0.054375					47	20	3	0	0	0	0.33347	1	6063	6063		0.45452	0.35968	1	302000	+		41135	18142	23835	23836	49978	49978					0.08246059541852446
RYDNVTILF	9	Unmodified	_RYDNVTILF_					0	0	0		ENSG00000061918|ENST00000264424|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8062744140625	2	570.806031	1139.59751	0.17868	0.00010199	-0.014097	-8.0465E-06	0.16458	9.3945E-05	570.8062375193239	64.905	1.3323	64.905	64.539	65.871	0					131	48	5	0	0	0	0.014206	3	16213	16113;16161;16213		72.968	14.289	1	13902000			41136	761	23836	23837	49979;49980;49981	49981					0.0332941450603812
RYDNVTILF	9	Unmodified	_RYDNVTILF_					0	0	0		ENSG00000061918|ENST00000264424|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8062744140625	2	570.806031	1139.59751	0.38085	0.00021739	-0.17442	-9.9559E-05	0.20643	0.00011783	570.8061251873246	64.801	1.3726	64.894	64.471	65.843	0.09288					133	50	5	0	0	0	0.020233	3	16123	16074;16123;16172		63.961	14.028	1	14570000			41137	761	23836	23837	49982;49983;49984	49983					0.0332941450603812
RYDNVTILF	9	Unmodified	_RYDNVTILF_					0	0	0		ENSG00000061918|ENST00000264424|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	ENSG00000061918|ENST00000264424|GUCY1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8064575195312	2	570.806031	1139.59751	0.1143	6.5242E-05	0.064387	3.6753E-05	0.17868	0.00010199	570.8062842902506	64.914	1.3579	64.903	64.469	65.827	-0.011337					142	49	6	0	0	0	0.017549	3	16155	16103;16155;16202		67.838	17.905	1	14323000			41138	761	23836	23837	49985;49986;49987	49986					0.0332941450603812
RYDPRHNRW	9	Unmodified	_RYDPRHNRW_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22;nc|ENSG00000099910|Q53GT1-3|KLHL22;ENST00000487090.1_1_22:20810643-20819754:-|nuORF	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.919677734375	3	433.886638	1298.63809	-0.40799	-0.00017702	0.94739	0.00041106	0.53939	0.00023404	433.8881504094346	28.291	0.13408	28.291	28.188	28.322	0.00046921					6	4	2	0	0	0	0.26238	1	4885	4885		1.0715	0.20709	1	35907			41139	1504	23837	23838	49988	49988					0.0007119366903225455
RYDPRHNRW	9	Unmodified	_RYDPRHNRW_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22;nc|ENSG00000099910|Q53GT1-3|KLHL22;ENST00000487090.1_1_22:20810643-20819754:-|nuORF	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	433.886638	1298.63809	-0.21077	-9.1452E-05	0.63547	0.00027572	0.42469	0.00018427	433.8885350888591	28.416	0.10776	28.412	28.359	28.467	-0.0042572	0.060503	-0.00020258	NaN	1.0715	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51623			41140	1504	23837	23838							0.0007119366903225455
RYDPRQNSWL	10	Unmodified	_RYDPRQNSWL_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.6358947753906	3	445.558187	1333.65273	-0.73921	-0.00032936	-2.6822	-0.0011951	-3.4214	-0.0015244	445.55698239832674	35.027	0.46928	35.105	34.866	35.336	0.077377					18	16	2	0	0	0	0.32068	1	6903	6903		3.5871	0.95582	1	120550			41141	6767	23838	23839	49989	49989					-0.0007477897349872364
RYFAPAPG	8	Unmodified	_RYFAPAPG_					0	0	0			REV__ENSG00000108511|ENST00000225648|HOXB6	REV__ENSG00000108511|ENST00000225648|HOXB6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.20843505859375	2	439.729595	877.444637	0.20906	9.1932E-05	-0.24545	-0.00010793	-0.036383	-1.5999E-05	439.7294969849529	46.002	0.41848	46.002	45.776	46.194	0					20	14	2	0	0	0	0.34046	1	10358	10358		14.582	5.2343	1	284120	+		41142	14601	23839	23840	49990	49990					0.0010126390008053932
RYFAPAPG	8	Unmodified	_RYFAPAPG_					0	0	0			REV__ENSG00000108511|ENST00000225648|HOXB6	REV__ENSG00000108511|ENST00000225648|HOXB6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.20855712890625	2	439.729595	877.444637	-0.064159	-2.8213E-05	-0.16041	-7.0535E-05	-0.22457	-9.8748E-05	439.7295052170926	45.757	0.47359	45.817	45.677	46.15	0.059837					25	16	2	0	0	0	0.34046	1	10233	10233		14.582	4.3983	1	190760	+		41143	14601	23839	23840	49991	49991					0.0010126390008053932
RYFDGNLEKL	10	Unmodified	_RYFDGNLEKL_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.77081298828125	3	418.887422	1253.64044	-0.018012	-7.5452E-06	-1.2845	-0.00053807	-1.3025	-0.00054562	418.88681566842394	46.238	0.51945	46.297	45.984	46.503	0.059834					24	18	2	0	0	0	0.28248	1	10414	10414		21.241	2.5202	1	375130			41144	6050	23840	23841	49992	49992					0.02376184563490824
RYFDGNLEKL	10	Unmodified	_RYFDGNLEKL_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5802917480469	3	418.887422	1253.64044	0.028415	1.1903E-05	-1.0479	-0.00043895	-1.0195	-0.00042704	418.88700732788436	46.241	0.57153	46.306	46.096	46.668	0.065048					26	20	2	0	0	0	0.31784	1	10345	10345		10.527	1.2837	1	362600			41145	6050	23840	23841	49993	49993					0.02376184563490824
RYFDGNLEKL	10	Unmodified	_RYFDGNLEKL_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	418.887422	1253.64044	-0.2449	-0.00010259	-0.71741	-0.00030051	-0.96231	-0.0004031	418.88715705759137	46.446	0.37885	46.446	46.324	46.703	0	0.096329	0.00039888	NaN	21.241	26	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373120			41146	6050	23840	23841							0.02376184563490824
RYFDHALTL	9	Unmodified	_RYFDHALTL_					0	0	0		ENSG00000176853|ENST00000334705|FAM91A1;ENST00000456826.2_1_1:149262279-149263299:+|nuORF	ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.29833984375	2	568.298373	1134.58219	0.35891	0.00020397	-0.20474	-0.00011635	0.15417	8.7614E-05	568.2981454894739	49.007	0.97952	49.007	48.721	49.701	0					109	35	4	0	0	0	0.0046246	3	11278	11233;11278;11332		89.401	47.561	1	2976100			41147	6946	23841	23842	49994;49995;49996	49995					0.020285477088464177
RYFDHALTL	9	Unmodified	_RYFDHALTL_					0	0	0		ENSG00000176853|ENST00000334705|FAM91A1;ENST00000456826.2_1_1:149262279-149263299:+|nuORF	ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2984619140625	2	568.298373	1134.58219	0.36543	0.00020767	-0.17715	-0.00010068	0.18828	0.000107	568.2982086549243	49.019	0.92482	49.064	48.796	49.721	0.044888					104	33	4	0	0	0	0.0098873	3	11254	11254;11303;11348		79.596	37.757	1	3314800			41148	6946	23841	23842	49997;49998;49999	49997					0.020285477088464177
RYFDHALTL	9	Unmodified	_RYFDHALTL_					0	0	0		ENSG00000176853|ENST00000334705|FAM91A1;ENST00000456826.2_1_1:149262279-149263299:+|nuORF	ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2984008789062	2	568.298373	1134.58219	0.1113	6.3249E-05	0.032603	1.8528E-05	0.1439	8.1777E-05	568.2983769119096	48.995	1.1267	49.027	48.71	49.837	0.032043					104	40	4	0	0	0	0.0054984	2	11267	11215;11267		86.332	44.492	1	3078700			41149	6946	23841	23842	50000;50001	50001					0.020285477088464177
RYFDHMPYS	9	Unmodified	_RYFDHMPYS_					0	0	0			REV__nc|ENSG00000138081|Q86XK2-6|FBXO11	REV__nc|ENSG00000138081|Q86XK2-6|FBXO11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.8467712402344	3	405.846569	1214.51788	0.040018	1.6241E-05	0.33669	0.00013664	0.37671	0.00015289	405.8466348273288	53.358	0.88419	53.358	53.09	53.974	0					108	32	5	0	0	0	0.33276	1	12611	12611		2.2828	1.0894	1	1876700	+		41150	15901	23842	23843	50002	50002					-0.08079975439613918
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.8014526367188	2	607.80128	1213.58801	0.34592	0.00021025	0.18726	0.00011382	0.53318	0.00032407	607.8012998908252	41.556	2.4258	41.556	41.069	43.494	0					248	93	5	0	0	0	1.1164E-13	8	8956	8866;8909;8956;9001;9041;9090;9135;9185		190.03	146.17	1	42921000			41151	6196	23843	23844	50003;50004;50005;50006;50007;50008;50009;50010	50005					-0.010243537794849544
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.53643798828125	3	405.536612	1213.58801	-0.15674	-6.3562E-05	0.10134	4.1096E-05	-0.055398	-2.2466E-05	405.5366251090549	41.543	2.2971	41.543	40.96	43.257	0					263	88	5	0	0	0	0.0039563	7	8945	8945;8991;9032;9079;9137;9181;9214		86.276	72.661	1	49315000			41152	6196	23843	23844	50011;50012;50013;50014;50015;50016;50017	50011					-0.010243537794849544
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.8013916015625	2	607.80128	1213.58801	0.38094	0.00023154	-0.11591	-7.0449E-05	0.26504	0.00016109	607.8013763606903	41.127	2.3991	41.217	40.796	43.195	0.090252					193	92	5	0	0	0	2.0885E-09	7	8817	8764;8817;8866;8916;8966;9016;9067		177.58	141.45	1	31894000			41153	6196	23843	23844	50018;50019;50020;50021;50022;50023;50024	50019					-0.010243537794849544
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5368957519531	3	405.536612	1213.58801	-0.15377	-6.2361E-05	-0.30544	-0.00012387	-0.45922	-0.00018623	405.53688484589316	41.127	2.7777	41.217	40.417	43.195	0.090252					222	106	6	0	0	0	0.0012219	3	8816	8816;8865;9019		103.69	85.317	1	37038000			41154	6196	23843	23844	50025;50026;50027	50025					-0.010243537794849544
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.8014526367188	2	607.80128	1213.58801	0.17294	0.00010511	0.056716	3.4472E-05	0.22966	0.00013959	607.8014712267409	41.07	2.084	41.166	40.721	42.805	0.096622					184	78	6	0	0	0	2.0885E-09	8	8769	8726;8769;8818;8869;8920;8967;9020;9083		177.58	141.45	1	33513000			41155	6196	23843	23844	50028;50029;50030;50031;50032;50033;50034;50035	50029					-0.010243537794849544
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5370178222656	3	405.536612	1213.58801	-0.20378	-8.264E-05	-0.26211	-0.0001063	-0.46589	-0.00018894	405.5368933794403	41.046	3.4192	41.143	39.733	43.153	0.096622					243	127	6	0	0	0	0.0039563	4	8830	8783;8830;8929;8943		86.276	67.903	1	38227000			41156	6196	23843	23844	50036;50037;50038;50039	50037					-0.010243537794849544
RYFDRAALF	9	Unmodified	_RYFDRAALF_					0	0	0		ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122666276-122668222:+|nuORF	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.8070068359375	2	579.806365	1157.59818	0.25157	0.00014586	0.23093	0.00013389	0.4825	0.00027976	579.8065944899436	49.956	0.46269	49.956	49.729	50.191	0					34	16	3	0	0	0	0.0046246	1	11541	11541		89.401	54.999	1	561560			41157	2925	23844	23845	50040	50040					0.025682539457193343
RYFDRAALF	9	Unmodified	_RYFDRAALF_					0	0	0		ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122666276-122668222:+|nuORF	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8063354492188	2	579.806365	1157.59818	0.50325	0.00029179	0.37162	0.00021547	0.87487	0.00050726	579.8065562194782	50.022	0.47943	50.043	49.746	50.226	0.020691					42	17	3	0	0	0	0.014206	1	11566	11566		72.968	38.566	1	449230			41158	2925	23844	23845	50041	50041					0.025682539457193343
RYFDRAALF	9	Unmodified	_RYFDRAALF_					0	0	0		ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122666276-122668222:+|nuORF	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	579.806365	1157.59818	0.49307	0.00028589	0.22116	0.00012823	0.71423	0.00041412	579.8064786930894	49.94	0.43583	49.985	49.749	50.185	0.044891	-0.0097834	-6.036E-05	NaN	89.401	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	652310			41159	2925	23844	23845							0.025682539457193343
RYFDVGLHNF	10	Unmodified	_RYFDVGLHNF_					0	0	0		nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.315185546875	2	634.314554	1266.61456	0.70706	0.0004485	-0.21866	-0.0001387	0.48841	0.0003098	634.3142993997566	54.702	0.65306	54.702	54.435	55.088	0					58	23	4	0	0	0	0.016018	2	12995	12995;13042		85.764	65.311	1	1406400			41160	688	23845	23846	50042;50043	50042					-0.00808664888131716
RYFDVGLHNF	10	Unmodified	_RYFDVGLHNF_					0	0	0		nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.2120056152344	3	423.212128	1266.61456	0.32148	0.00013605	-0.50102	-0.00021204	-0.17953	-7.5981E-05	423.21188175696136	54.708	0.71357	54.708	54.435	55.148	0					55	25	3	0	0	0	0.097738	2	13035	13035;13086		48.561	36.32	1	2312500			41161	688	23845	23846	50044;50045	50044					-0.00808664888131716
RYFDVGLHNF	10	Unmodified	_RYFDVGLHNF_					0	0	0		nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3148193359375	2	634.314554	1266.61456	0.73228	0.00046449	-0.41133	-0.00026091	0.32094	0.00020358	634.314079438341	54.618	0.58591	54.681	54.434	55.02	0.063202					51	21	3	0	0	0	0.026457	2	12974	12974;13021		81.915	54.286	1	1549800			41162	688	23845	23846	50046;50047	50046					-0.00808664888131716
RYFDVGLHNF	10	Unmodified	_RYFDVGLHNF_					0	0	0		nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.2120666503906	3	423.212128	1266.61456	0.23843	0.00010091	-0.36438	-0.00015421	-0.12595	-5.3305E-05	423.2119036947183	54.623	0.58591	54.686	54.434	55.02	0.063202					54	21	3	0	0	0	0.088207	2	12981	12981;13028		50.648	33.205	1	2307600			41163	688	23845	23846	50048;50049	50048					-0.00808664888131716
RYFDVGLHNF	10	Unmodified	_RYFDVGLHNF_					0	0	0		nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3148193359375	2	634.314554	1266.61456	0.88171	0.00055928	-0.34591	-0.00021942	0.53581	0.00033987	634.3140393948531	54.98	0.55666	54.965	54.681	55.238	-0.015923					61	20	4	0	0	0	0.0042139	2	13072	13072;13118		118.21	91.326	1	2186100			41164	688	23845	23846	50050;50051	50050					-0.00808664888131716
RYFDVGLHNF	10	Unmodified	_RYFDVGLHNF_					0	0	0		nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.2120666503906	3	423.212128	1266.61456	0.35677	0.00015099	-0.49193	-0.00020819	-0.13516	-5.7201E-05	423.2118828083109	55.002	0.85789	54.986	54.681	55.539	-0.015919					61	31	3	0	0	0	0.11125	1	13108	13108		45.603	36.059	1	2957500			41165	688	23845	23846	50052	50052					-0.00808664888131716
RYFENPQVI	9	Unmodified	_RYFENPQVI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3036499023438	2	583.303655	1164.59276	0.40261	0.00023484	0.038311	2.2347E-05	0.44092	0.00025719	583.3038139887738	48.85	1.3392	48.85	48.504	49.843	0					104	48	4	0	0	0	0.074552	2	11186	11186;11239		43.772	23.319	1	3261700			41166	7854	23846	23847	50053;50054	50053					0.017045303632812647
RYFENPQVI	9	Unmodified	_RYFENPQVI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3036499023438	2	583.303655	1164.59276	0.33503	0.00019543	0.12895	7.5219E-05	0.46399	0.00027064	583.3038791107657	48.903	1.0588	48.948	48.69	49.749	0.044888					100	38	4	0	0	0	0.07944	2	11197	11197;11244		41.956	21.502	1	3074700			41167	7854	23846	23847	50055;50056	50055					0.017045303632812647
RYFENPQVI	9	Unmodified	_RYFENPQVI_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3038940429688	2	583.303655	1164.59276	0.24023	0.00014013	0.24263	0.00014153	0.48286	0.00028165	583.3039260511639	48.817	1.2343	48.85	48.602	49.837	0.032043					104	44	4	0	0	0	0.09758	2	11183	11183;11231		38.615	21.502	1	3105500			41168	7854	23846	23847	50057;50058	50057					0.017045303632812647
RYFHTHVRK	9	Unmodified	_RYFHTHVRK_					0	0	0			REV__Harlequin-int_dup204|chr5:139526721-139527362:+|3.47385935140097|0.1073174503437065|5.02|522.0|31|1|anti-sense	REV__Harlequin-int_dup204|chr5:139526721-139527362:+|3.47385935140097|0.1073174503437065|5.02|522.0|31|1|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.6802368164062	2	622.343981	1242.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.025	1	93.025	92.525	93.525	0.00046539								0	0	0	0.26334	1	24759	24759		2.0598	0	1		+		41169	22708	23847	23848	50059	50059					0.06177856196813991
RYFHTHVRK	9	Unmodified	_RYFHTHVRK_					0	0	0			REV__Harlequin-int_dup204|chr5:139526721-139527362:+|3.47385935140097|0.1073174503437065|5.02|522.0|31|1|anti-sense	REV__Harlequin-int_dup204|chr5:139526721-139527362:+|3.47385935140097|0.1073174503437065|5.02|522.0|31|1|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3441162109375	2	622.343981	1242.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.049	1	99.042	98.542	99.542	-0.006897								0	0	0	0.26334	1	26535	26535		2.0598	0	1		+		41170	22708	23847	23848	50060	50060					0.06177856196813991
RYFIAPAKF	9	Unmodified	_RYFIAPAKF_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.C916Vfs*123|1|0.4|ENSG00000135862|chr1:183125494-183125494|C/-|frameshift_variant	ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.C916Vfs*123|1|0.4|ENSG00000135862|chr1:183125494-183125494|C/-|frameshift_variant	LAMC1|p.C916Vfs*123|1|0.4|ENSG00000135862|chr1:183125494-183125494|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.8162231445312	2	556.816202	1111.61785	0.46565	0.00025928	0.6166	0.00034333	1.0822	0.00060261	556.8166014938291	46.801	0.48753	46.801	46.566	47.053	0					24	16	2	0	0	0	0.041175	2	10567	10567;10600		56.177	30.778	1	1150200			41171	3913;12501	23848	23849	50061;50062	50061					0.06650629956516241
RYFIAPAKF	9	Unmodified	_RYFIAPAKF_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.C916Vfs*123|1|0.4|ENSG00000135862|chr1:183125494-183125494|C/-|frameshift_variant	ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.C916Vfs*123|1|0.4|ENSG00000135862|chr1:183125494-183125494|C/-|frameshift_variant	LAMC1|p.C916Vfs*123|1|0.4|ENSG00000135862|chr1:183125494-183125494|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8161010742188	2	556.816202	1111.61785	0.51253	0.00028539	0.68828	0.00038325	1.2008	0.00066863	556.8164982136649	46.644	0.54404	46.697	46.44	46.984	0.052574					39	19	3	0	0	0	0.079752	1	10513	10513		41.84	17.166	1	831370			41172	3913;12501	23848	23849	50063	50063					0.06650629956516241
RYFIAPAKF	9	Unmodified	_RYFIAPAKF_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.C916Vfs*123|1|0.4|ENSG00000135862|chr1:183125494-183125494|C/-|frameshift_variant	ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.C916Vfs*123|1|0.4|ENSG00000135862|chr1:183125494-183125494|C/-|frameshift_variant	LAMC1|p.C916Vfs*123|1|0.4|ENSG00000135862|chr1:183125494-183125494|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.816162109375	2	556.816202	1111.61785	0.30416	0.00016936	1.1362	0.00063267	1.4404	0.00080203	556.8169581541973	46.675	0.49341	46.729	46.544	47.037	0.054375					34	16	3	0	0	0	0.079752	2	10521	10521;10566		41.84	16.87	1	1015700			41173	3913;12501	23848	23849	50064;50065	50064					0.06650629956516241
RYFKGPELL	9	Unmodified	_RYFKGPELL_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3	ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.8191528320312	2	561.818941	1121.62333	0.33372	0.00018749	3.6799	0.0020674	4.0136	0.0022549	561.8189046058159	46.067	1.4383	46.067	45.586	47.024	0					193	51	6	0	0	0	0.0028542	2	10335	10291;10335		103.42	49.393	1	16515000			41174	1678;941	23849	23850	50066;50067	50067					0.06738308748322197
RYFKGPELL	9	Unmodified	_RYFKGPELL_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3	ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.819091796875	2	561.818941	1121.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.8	1	45.859	45.359	46.359	0.059834								0	0	0	1.6912E-06	1	10263	10263		125.53	77.78	1				41175	1678;941	23849	23850	50068	50068					0.06738308748322197
RYFKGPELL	9	Unmodified	_RYFKGPELL_					0	0	0		ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000254598|ENST00000528848|CSNK2A3	ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.8191528320312	2	561.818941	1121.62333	0.43615	0.00024504	3.3578	0.0018865	3.794	0.0021315	561.818902097654	45.797	1.8764	45.862	45.302	47.179	0.065048					219	67	6	0	0	0	0.0016712	1	10265	10265		114.2	54.128	1	13148000			41176	1678;941	23849	23850	50069	50069					0.06738308748322197
RYFKTPRKF	9	Unmodified	_RYFKTPRKF_					0	0	0		nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-3|CIZ1	nc|ENSG00000148337|Q9ULV3-3|CIZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.90863037109375	3	414.90838	1241.70331	-0.1411	-5.8545E-05	-0.098708	-4.0955E-05	-0.23981	-9.95E-05	414.9085355651152	23.983	2.3202	23.983	23.362	25.683	0					239	79	5	0	0	0	0.01053	7	3622	3534;3579;3622;3663;3710;3762;3809		78.61	54.821	1	4667900			41177	4804	23850	23851	50070;50071;50072;50073;50074;50075;50076	50072					0.09212795142161667
RYFKTPRKF	9	Unmodified	_RYFKTPRKF_					0	0	0		nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-3|CIZ1	nc|ENSG00000148337|Q9ULV3-3|CIZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.8591918945312	2	621.858932	1241.70331	0.178	0.00011069	-0.29185	-0.00018149	-0.11385	-7.0799E-05	621.8587508382877	23.978	0.64144	23.978	23.699	24.34	0					39	21	3	0	0	0	0.31772	2	3611	3611;3659		8.7454	4.4162	1	118050			41178	4804	23850	23851	50077;50078	50077					0.09212795142161667
RYFKTPRKF	9	Unmodified	_RYFKTPRKF_					0	0	0		nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-3|CIZ1	nc|ENSG00000148337|Q9ULV3-3|CIZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.9085693359375	3	414.90838	1241.70331	0.26365	0.00010939	-0.45377	-0.00018827	-0.19013	-7.8886E-05	414.9083629907201	24.227	2.2385	24.154	23.422	25.661	-0.072559					239	77	6	0	0	0	0.02847	7	3730	3593;3639;3685;3730;3772;3817;3863		60.899	47.284	1	4249300			41179	4804	23850	23851	50079;50080;50081;50082;50083;50084;50085	50082					0.09212795142161667
RYFKTPRKF	9	Unmodified	_RYFKTPRKF_					0	0	0		nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-3|CIZ1	nc|ENSG00000148337|Q9ULV3-3|CIZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.9083557128906	3	414.90838	1241.70331	0.1541	6.3938E-05	-0.34495	-0.00014312	-0.19085	-7.9185E-05	414.90843452643014	24.276	2.2514	24.238	23.534	25.785	-0.038927					257	78	5	0	0	0	0.0099976	7	3638	3596;3638;3684;3725;3769;3813;3867		79.427	49.586	1	4699300			41180	4804	23850	23851	50086;50087;50088;50089;50090;50091;50092	50087					0.09212795142161667
RYFPDLDEL	9	Unmodified	_RYFPDLDEL_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2891235351562	2	584.287671	1166.56079	0.32512	0.00018996	0.51169	0.00029897	0.83681	0.00048894	584.2885698500854	57.709	2.7743	57.709	57.323	60.098	0					299	97	6	0	0	0	0.079752	1	13960	13960		41.84	1.8899	1	98052000	+		41181	17453	23851	23852	50093	50093					-0.015828821105287716
RYFPDLDEL	9	Unmodified	_RYFPDLDEL_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2879028320312	2	584.287671	1166.56079	0.29265	0.00017099	0.54806	0.00032023	0.84071	0.00049122	584.2885505856126	57.507	2.8248	57.592	57.156	59.981	0.085617					316	101	6	0	0	0	0.11461	1	14046	14046		36.127	6.2864	1	84754000	+		41182	17453	23851	23852	50094	50094					-0.015828821105287716
RYFPDLDEL	9	Unmodified	_RYFPDLDEL_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.2886352539062	2	584.287671	1166.56079	0.30292	0.00017699	0.53916	0.00031502	0.84208	0.00049202	584.2885781977938	57.808	2.5163	57.791	57.364	59.88	-0.0172					313	90	6	0	0	0	0.079752	2	13943	13943;14284		41.84	3.8656	1	87221000	+		41183	17453	23851	23852	50095;50096	50095					-0.015828821105287716
RYFPNPEEF	9	Unmodified	_RYFPNPEEF_					0	0	0		nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENSG00000145476|ENST00000378802|CYP4V2;ENST00000502665.1_1_4:187126176-187131792:+|nuORF	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.7809448242188	2	599.780013	1197.54547	0.81802	0.00049063	0.50891	0.00030524	1.3269	0.00079587	599.7802082014946	54.625	1.1224	54.625	54.026	55.148	0					104	40	4	0	0	0	0.016948	1	12965	12965		83.429	54.347	1	1945700			41184	4653	23852	23853	50097	50097					-0.04539748907723151
RYFPNPEEF	9	Unmodified	_RYFPNPEEF_					0	0	0		nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENSG00000145476|ENST00000378802|CYP4V2;ENST00000502665.1_1_4:187126176-187131792:+|nuORF	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.7805786132812	2	599.780013	1197.54547	0.78507	0.00047087	0.85167	0.00051082	1.6367	0.00098169	599.780302035241	54.568	1.0926	54.631	54.088	55.181	0.063202					102	40	4	0	0	0	0.0027197	2	12971	12924;12971		114.2	92.665	1	1705000			41185	4653	23852	23853	50098;50099	50099					-0.04539748907723151
RYFPNPEEF	9	Unmodified	_RYFPNPEEF_					0	0	0		nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENSG00000145476|ENST00000378802|CYP4V2;ENST00000502665.1_1_4:187126176-187131792:+|nuORF	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.7805786132812	2	599.780013	1197.54547	0.72212	0.00043311	0.50365	0.00030208	1.2258	0.00073519	599.7801654740218	54.941	1.2875	54.925	54.361	55.649	-0.015923					109	46	4	0	0	0	0.0030911	3	13069	13020;13069;13120		110.55	81.471	1	2192300			41186	4653	23852	23853	50100;50101;50102	50101					-0.04539748907723151
RYFPVFEKI	9	Unmodified	_RYFPVFEKI_					0	0	0		nc|ENSG00000170899|O15217-2|GSTA4;ENSG00000170899|ENST00000370963|GSTA4	nc|ENSG00000170899|O15217-2|GSTA4	nc|ENSG00000170899|O15217-2|GSTA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.7805786132812	2	599.834591	1197.65463	0.76459	0.00045863	-0.81013	-0.00048594	-0.045536	-2.7314E-05	599.8340353688357	55.028	0.34644	55.012	54.681	55.028	-0.015923					20	12	2	0	0	0	0.22143	1	13069	13069		19.362	4.5237	1	508970			41187	6492	23853	23854	50103	50103					0.063708817824363
RYFQAASGDF	10	Unmodified	_RYFQAASGDF_					0	0	0		ENST00000586847.1_1_18:77794565-77797271:+|nuORF;ENST00000306735.9_1_18:77794565-77797363:+|nuORF	ENST00000586847.1_1_18:77794565-77797271:+|nuORF	ENST00000586847.1_1_18:77794565-77797271:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.2703247070312	2	581.269813	1160.52507	0.27593	0.00016039	0.44821	0.00026053	0.72414	0.00042092	581.2699632794018	51.749	0.64182	51.749	51.481	52.123	0					57	23	3	0	0	0	0.21644	2	12105	12105;12160		30.637	4.3684	1	1228500			41188	9275	23854	23855	50104;50105	50104					-0.04876919567527693
RYFQAASGDF	10	Unmodified	_RYFQAASGDF_					0	0	0		ENST00000586847.1_1_18:77794565-77797271:+|nuORF;ENST00000306735.9_1_18:77794565-77797363:+|nuORF	ENST00000586847.1_1_18:77794565-77797271:+|nuORF	ENST00000586847.1_1_18:77794565-77797271:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.2701416015625	2	581.269813	1160.52507	0.31067	0.00018058	0.20816	0.000121	0.51883	0.00030158	581.2698652225495	51.679	0.72198	51.725	51.528	52.25	0.046574					70	25	4	0	0	0	0.21644	2	12132	12076;12132		30.637	4.3684	1	1332900			41189	9275	23854	23855	50106;50107	50107					-0.04876919567527693
RYFQAASGDF	10	Unmodified	_RYFQAASGDF_					0	0	0		ENST00000586847.1_1_18:77794565-77797271:+|nuORF;ENST00000306735.9_1_18:77794565-77797363:+|nuORF	ENST00000586847.1_1_18:77794565-77797271:+|nuORF	ENST00000586847.1_1_18:77794565-77797271:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.2702026367188	2	581.269813	1160.52507	0.094588	5.4981E-05	0.40154	0.0002334	0.49612	0.00028838	581.2699090642227	51.976	0.62248	51.975	51.71	52.332	-0.00081253					70	22	4	0	0	0	0.21644	1	12147	12147		30.637	4.3684	1	1707400			41190	9275	23854	23855	50108	50108					-0.04876919567527693
RYFQVEVEKRM	11	Unmodified	_RYFQVEVEKRM_					0	0	0		ENSG00000166801|ENST00000675163|FAM111A	ENSG00000166801|ENST00000675163|FAM111A	ENSG00000166801|ENST00000675163|FAM111A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.5941162109375	3	495.594133	1483.76057	0.26607	0.00013186	-0.31047	-0.00015387	-0.044398	-2.2003E-05	495.594028058316	22.349	0.73985	22.349	22.105	22.845	0					73	25	4	0	0	0	0.48173	1	3100	3100		0.50596	0	1	475500			41191	6115	23855	23856	50109	50109					0.038038495655655424
RYFYKVHQL	9	Unmodified	_RYFYKVHQL_					0	0	0		nc|ENSG00000160058|Q9NW68-9|BSDC1;nc|ENSG00000160058|Q9NW68-4|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	nc|ENSG00000160058|Q9NW68-9|BSDC1	nc|ENSG00000160058|Q9NW68-9|BSDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.5645446777344	3	418.564502	1252.67168	0.18636	7.8002E-05	-0.23263	-9.7371E-05	-0.046275	-1.9369E-05	418.5643747312121	32.184	1.0862	32.184	31.953	33.039	0					110	38	5	0	0	0	0.0073901	3	6122	6077;6122;6166		83.429	51.793	1	1354200			41192	5433	23856	23857	50110;50111;50112	50111					0.05544802388226344
RYFYKVHQL	9	Unmodified	_RYFYKVHQL_					0	0	0		nc|ENSG00000160058|Q9NW68-9|BSDC1;nc|ENSG00000160058|Q9NW68-4|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	nc|ENSG00000160058|Q9NW68-9|BSDC1	nc|ENSG00000160058|Q9NW68-9|BSDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.56451416015625	3	418.564502	1252.67168	0.43214	0.00018088	-0.45764	-0.00019155	-0.025503	-1.0675E-05	418.5642673104991	32.149	1.0192	32.192	31.941	32.96	0.042362					107	36	4	0	0	0	0.013404	2	6127	6081;6127		74.2	42.564	1	1562900			41193	5433	23856	23857	50113;50114	50114					0.05544802388226344
RYFYKVHQL	9	Unmodified	_RYFYKVHQL_					0	0	0		nc|ENSG00000160058|Q9NW68-9|BSDC1;nc|ENSG00000160058|Q9NW68-4|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	nc|ENSG00000160058|Q9NW68-9|BSDC1	nc|ENSG00000160058|Q9NW68-9|BSDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5643310546875	3	418.564502	1252.67168	0.16196	6.7789E-05	-0.24735	-0.00010353	-0.085389	-3.5741E-05	418.5643584568632	32.186	1.2159	32.231	31.894	33.11	0.044811					117	43	4	0	0	0	0.011693	3	6066	6066;6116;6160		76.825	42.098	1	1332700			41194	5433	23856	23857	50115;50116;50117	50115					0.05544802388226344
RYGDGGSTF	9	Unmodified	_RYGDGGSTF_					0	0	0		HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENST00000515481.5_1_5:179044503-179045371:-|nuORF	HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant;ENST00000502904.5_1_5:179043989-179045371:-|nuORF	HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2146301269531	2	480.214506	958.414459	0.020715	9.9476E-06	0.35656	0.00017122	0.37727	0.00018117	480.2145830723193	27.337	0.86057	27.337	27.035	27.896	0					72	29	3	0	0	0	0.074552	2	4602	4602;4654		43.772	40.239	1	768290			41195	6324;11284	23857	23858	50118;50119	50118					-0.06641139555756581
RYGDGGSTF	9	Unmodified	_RYGDGGSTF_					0	0	0		HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENST00000515481.5_1_5:179044503-179045371:-|nuORF	HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant;ENST00000502904.5_1_5:179043989-179045371:-|nuORF	HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2145080566406	2	480.214506	958.414459	0.017227	8.2725E-06	0.21877	0.00010506	0.236	0.00011333	480.214519508059	27.384	0.8798	27.362	27.069	27.949	-0.02141					77	30	4	0	0	0	0.086462	1	4665	4665		40.239	2.088	1	865830			41196	6324;11284	23857	23858	50120	50120					-0.06641139555756581
RYGDGGSTF	9	Unmodified	_RYGDGGSTF_					0	0	0		HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000502904.5_1_5:179043989-179045371:-|nuORF;ENST00000515481.5_1_5:179044503-179045371:-|nuORF	HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant;ENST00000502904.5_1_5:179043989-179045371:-|nuORF	HNRNPH1|p.H338Rfs*56|1|0.06|ENSG00000169045|chr5:179617557-179617558|AT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2145080566406	2	480.214506	958.414459	0.041617	1.9985E-05	0.22477	0.00010794	0.26638	0.00012792	480.21455067976063	27.433	0.76569	27.421	27.101	27.867	-0.011562					69	26	4	0	0	0	0.086462	2	4628	4628;4673		40.239	10.014	1	871620			41197	6324;11284	23857	23858	50121;50122	50121					-0.06641139555756581
RYGDIRRLRL	10	Unmodified	_RYGDIRRLRL_					0	0	0		ENSG00000184209|ENST00000526639|SNRNP35;nc|ENSG00000184209|Q16560-2|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.5750732421875	3	439.933588	1316.77894	-0.52853	-0.00023252	-0.094938	-4.1766E-05	-0.62347	-0.00027429	440.26781590501315	34.425	0.53125	34.425	34.22	34.751	0					36	18	3	0	0	0	0.32015	1	6809	6809		2.8433	0.75728	1	212830			41198	7438	23858	23859	50123	50123					0.13321772322456127
RYGDIRRLRL	10	Unmodified	_RYGDIRRLRL_					0	0	0		ENSG00000184209|ENST00000526639|SNRNP35;nc|ENSG00000184209|Q16560-2|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.5752258300781	3	439.933588	1316.77894	-0.34229	-0.00015059	0.074069	3.2585E-05	-0.26823	-0.000118	439.9335437442192	34.244	0.58205	34.31	34.04	34.622	0.06636					37	20	3	0	0	0	0.31867	1	6720	6720		7.9454	3.7559	1	155790			41199	7438	23858	23859	50124	50124					0.13321772322456127
RYGDIRRLRL	10	Unmodified	_RYGDIRRLRL_					0	0	0		ENSG00000184209|ENST00000526639|SNRNP35;nc|ENSG00000184209|Q16560-2|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	ENSG00000184209|ENST00000526639|SNRNP35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.5751647949219	3	439.933588	1316.77894	-0.14645	-6.4427E-05	-0.37249	-0.00016387	-0.51894	-0.0002283	439.9333630612021	34.216	0.64677	34.283	34.047	34.694	0.066704					41	22	2	0	0	0	0.32015	1	6747	6747		5.0475	5.0475	1	224310			41200	7438	23858	23859	50125	50125					0.13321772322456127
RYGDLVDYL	9	Unmodified	_RYGDLVDYL_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2825317382812	2	557.282389	1112.55022	0.15612	8.7E-05	0.27109	0.00015108	0.42721	0.00023808	557.2824573235604	64.948	1.3425	64.948	64.37	65.713	0					170	48	5	0	0	0	0.014206	3	16176	16131;16176;16220		72.968	25.219	1	5093200			41201	2525	23859	23860	50126;50127;50128	50127					-0.001548647649542545
RYGDLVDYL	9	Unmodified	_RYGDLVDYL_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.282470703125	2	557.282389	1112.55022	0.24659	0.00013742	0.2832	0.00015782	0.52979	0.00029524	557.2824251086554	64.851	1.2123	64.944	64.42	65.632	0.09288					168	44	5	0	0	0	0.04299	2	16146	16102;16146		55.503	22.717	1	4670300			41202	2525	23859	23860	50129;50130	50130					-0.001548647649542545
RYGDLVDYL	9	Unmodified	_RYGDLVDYL_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2822875976562	2	557.282389	1112.55022	0.046846	2.6107E-05	0.37744	0.00021034	0.42429	0.00023645	557.2825757504843	65.002	1.2539	64.991	64.469	65.723	-0.011337					134	45	4	0	0	0	0.0079761	2	16136	16136;16179		82.529	34.781	1	4890700			41203	2525	23859	23860	50131;50132	50131					-0.001548647649542545
RYGDVFQI	8	Unmodified	_RYGDVFQI_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1;CYP1B1|p.P253Rfs*25|1|0.16|ENSG00000138061|chr2:38074631-38074631|G/-|frameshift_variant	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2593078613281	2	499.258717	996.50288	0.3498	0.00017464	0.040913	2.0426E-05	0.39071	0.00019506	499.2593247082668	55.403	3.3198	55.403	55.008	58.328	0					295	121	5	0	0	0	0.066604	6	13202	13156;13202;13253;13306;13354;13398		70.332	24.311	1	73217000			41204	4110	23860	23861	50133;50134;50135;50136;50137;50138	50134					0.004489007547249457
RYGDVFQI	8	Unmodified	_RYGDVFQI_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1;CYP1B1|p.P253Rfs*25|1|0.16|ENSG00000138061|chr2:38074631-38074631|G/-|frameshift_variant	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2593688964844	2	499.258717	996.50288	0.59054	0.00029483	-0.14228	-7.1036E-05	0.44826	0.0002238	499.2592235829054	55.339	3.2094	55.41	55.028	58.237	0.070885					312	118	5	0	0	0	0.034373	6	13177	13131;13177;13224;13269;13308;13403		85.642	37.296	1	75175000			41205	4110	23860	23861	50139;50140;50141;50142;50143;50144	50140					0.004489007547249457
RYGDVFQI	8	Unmodified	_RYGDVFQI_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1;CYP1B1|p.P253Rfs*25|1|0.16|ENSG00000138061|chr2:38074631-38074631|G/-|frameshift_variant	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.259765625	2	499.258717	996.50288	0.4366	0.00021798	0.15385	7.681E-05	0.59045	0.00029479	499.25932322991264	55.574	3.1721	55.555	55.181	58.353	-0.019077					283	116	5	0	0	0	0.0471	6	13256	13208;13256;13307;13355;13400;13525		79.596	30.375	1	84053000			41206	4110	23860	23861	50145;50146;50147;50148;50149;50150	50146					0.004489007547249457
RYGGPLGITI	10	Unmodified	_RYGGPLGITI_					0	0	0		ENSG00000144596|ENST00000621039|GRIP2;nc|ENSG00000144596|Q9C0E4-2|GRIP2;nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1	ENSG00000144596|ENST00000621039|GRIP2	ENSG00000144596|ENST00000621039|GRIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.8033447265625	2	523.803291	1045.59203	0.21046	0.00011024	-0.12044	-6.3089E-05	0.09002	4.7153E-05	523.8030997258107	59.837	0.91906	59.837	59.412	60.331	0					58	32	3	0	0	0	0.11081	2	14608	14553;14608		45.7	7.524	1	811630			41207	4598	23861	23862	50151;50152	50152					0.07105735714230832
RYGGPLGITI	10	Unmodified	_RYGGPLGITI_					0	0	0		ENSG00000144596|ENST00000621039|GRIP2;nc|ENSG00000144596|Q9C0E4-2|GRIP2;nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1	ENSG00000144596|ENST00000621039|GRIP2	ENSG00000144596|ENST00000621039|GRIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.8031005859375	2	523.803291	1045.59203	0.11188	5.8604E-05	-0.14027	-7.3472E-05	-0.028385	-1.4868E-05	523.8030827414744	59.641	0.88565	59.736	59.325	60.211	0.095089					62	31	3	0	0	0	0.11081	2	14508	14508;14559		45.7	7.524	1	880400			41208	4598	23861	23862	50153;50154	50153					0.07105735714230832
RYGGPLGITI	10	Unmodified	_RYGGPLGITI_					0	0	0		ENSG00000144596|ENST00000621039|GRIP2;nc|ENSG00000144596|Q9C0E4-2|GRIP2;nc|ENSG00000155974|Q9Y3R0-3|GRIP1;nc|ENSG00000155974|Q9Y3R0-2|GRIP1;ENSG00000155974|ENST00000359742|GRIP1	ENSG00000144596|ENST00000621039|GRIP2	ENSG00000144596|ENST00000621039|GRIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.80322265625	2	523.803291	1045.59203	0.46872	0.00024552	-0.50361	-0.00026379	-0.034885	-1.8273E-05	523.802983048992	59.791	0.88044	59.779	59.343	60.223	-0.011486					43	30	2	0	0	0	0.083722	2	14569	14525;14569		51.63	13.454	1	907820			41209	4598	23861	23862	50155;50156	50156					0.07105735714230832
RYGLLTNEI	9	Unmodified	_RYGLLTNEI_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7877807617188	2	539.798206	1077.58186	0.54779	0.0002957	0.66457	0.00035873	1.2124	0.00065443	539.7986033020511	52.749	0.65424	52.749	52.574	53.228	0					38	23	3	0	0	0	0.16685	1	12395	12395		28.495	2.2264	1	497090			41210	2210	23862	23863	50157	50157					0.046171279889904326
RYGLLTNEI	9	Unmodified	_RYGLLTNEI_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7877197265625	2	539.798206	1077.58186	0.64449	0.00034789	0.48242	0.00026041	1.1269	0.0006083	539.7983388164581	52.659	0.45488	52.709	52.553	53.008	0.050575					34	16	3	0	0	0	0.16685	1	12419	12419		28.495	0.86571	1	429720			41211	2210	23862	23863	50158	50158					0.046171279889904326
RYGLLTNEI	9	Unmodified	_RYGLLTNEI_					0	0	0		ENST00000586522.5_1_17:40255624-40263910:-|nuORF;ENSG00000108771|ENST00000251642|DHX58	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7879638671875	2	539.798206	1077.58186	0.52518	0.00028349	0.62818	0.00033909	1.1534	0.00062258	539.7984384966776	52.934	0.53537	52.924	52.631	53.166	-0.0096054					25	16	2	0	0	0	0.069258	2	12479	12426;12479		45.74	5.7902	1	511380			41212	2210	23862	23863	50159;50160	50160					0.046171279889904326
RYGLVTNEI	9	Unmodified	_RYGLVTNEI_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7901611328125	2	532.790381	1063.56621	0.37468	0.00019962	-0.16935	-9.0228E-05	0.20533	0.0001094	532.7902563539477	46.427	1.6292	46.427	46.168	47.797	0					139	58	4	0	0	0	0.00024732	2	10452	10452;10502		132.38	62.048	1	5208700			41213	2627	23863	23864	50161;50162	50161					0.036968414719467546
RYGLVTNEI	9	Unmodified	_RYGLVTNEI_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7902221679688	2	532.790381	1063.56621	0.2812	0.00014982	-0.23861	-0.00012713	0.04259	2.2692E-05	532.7902827615607	46.222	1.7997	46.282	46.015	47.815	0.059837					119	66	4	0	0	0	0.0011116	2	10428	10380;10428		121.35	59.744	1	5416100			41214	2627	23863	23864	50163;50164	50164					0.036968414719467546
RYGLVTNEI	9	Unmodified	_RYGLVTNEI_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.790283203125	2	532.790381	1063.56621	0.45278	0.00024124	-0.32784	-0.00017467	0.12495	6.6571E-05	532.790198667565	46.237	1.7765	46.302	46.043	47.819	0.065048					112	64	4	0	0	0	0.0016724	2	10384	10384;10438		114.19	60.354	1	5125400			41215	2627	23863	23864	50165;50166	50165					0.036968414719467546
RYGPIVDVY	9	Unmodified	_RYGPIVDVY_					0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000188529|ENST00000492112|SRSF10;ENSG00000154548|ENST00000452027|SRSF12	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.287841796875	2	541.287474	1080.5604	0.63526	0.00034386	0.59766	0.0003235	1.2329	0.00066736	541.2877815809443	51.277	0.80545	51.277	50.896	51.702	0					83	29	4	0	0	0	0.09064	1	11956	11956		56.177	29.293	1	2888200			41216	7753	23864	23865	50167	50167					0.023337429602634074
RYGPIVDVY	9	Unmodified	_RYGPIVDVY_					0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000188529|ENST00000492112|SRSF10;ENSG00000154548|ENST00000452027|SRSF12	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2879028320312	2	541.287474	1080.5604	0.53571	0.00028998	0.44431	0.0002405	0.98002	0.00053047	541.2876558310242	51.312	0.63593	51.358	51.037	51.673	0.046577					70	23	4	0	0	0	0.082808	1	11953	11953		58.679	28.042	1	2630100			41217	7753	23864	23865	50168	50168					0.023337429602634074
RYGPIVDVY	9	Unmodified	_RYGPIVDVY_					0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000188529|ENST00000492112|SRSF10;ENSG00000154548|ENST00000452027|SRSF12	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2877807617188	2	541.287474	1080.5604	0.63447	0.00034343	0.58174	0.00031489	1.2162	0.00065832	541.2877203315605	51.356	0.81351	51.365	51.016	51.829	0.0095673					86	30	4	0	0	0	0.016723	1	11978	11978		69.105	38.468	1	2401700			41218	7753	23864	23865	50169	50169					0.023337429602634074
RYGPQFTL	8	Unmodified	_RYGPQFTL_					0	0	0		ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000276547|ENST00000617380|PCDHGB5;ENSG00000253846|ENST00000398610|PCDHGA10;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000253537|ENST00000518325|PCDHGA7;ENSG00000253731|ENST00000517434|PCDHGA6;ENSG00000253159|ENST00000252085|PCDHGA12;ENSG00000081853|ENST00000394576|PCDHGA2;ENSG00000253485|ENST00000518069|PCDHGA5;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253910|ENST00000522605|PCDHGB2;ENSG00000253305|ENST00000520790|PCDHGB6;ENSG00000254122|ENST00000398594|PCDHGB7;ENSG00000262209|ENST00000576222|PCDHGB3;ENSG00000254221|ENST00000523390|PCDHGB1;ENSG00000253953|ENST00000519479|PCDHGB4;ENSG00000262576|ENST00000571252|PCDHGA4;ENSG00000242419|ENST00000306593|PCDHGC4;ENSG00000240764|ENST00000252087|PCDHGC5;ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000253873|ENST00000398587|PCDHGA11;ENSG00000261934|ENST00000573521|PCDHGA9	ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000242419|ENST00000306593|PCDHGC4;ENSG00000240764|ENST00000252087|PCDHGC5;ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000261934|ENST00000573521|PCDHGA9	ENSG00000240184|ENST00000308177|PCDHGC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.26123046875	2	491.261259	980.507966	0.5574	0.00027383	-0.15362	-7.5468E-05	0.40377	0.00019836	491.26116110857487	50.967	0.63447	51.013	50.713	51.347	0.046574					71	23	4	0	0	0	0.20663	1	11886	11886		41.84	15.498	1	834570			41219	8518;8546;8524;8603;8606;8664	23865	23866	50170	50170					0.01693204617322408
RYGPQFTL	8	Unmodified	_RYGPQFTL_					0	0	0		ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000276547|ENST00000617380|PCDHGB5;ENSG00000253846|ENST00000398610|PCDHGA10;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000253537|ENST00000518325|PCDHGA7;ENSG00000253731|ENST00000517434|PCDHGA6;ENSG00000253159|ENST00000252085|PCDHGA12;ENSG00000081853|ENST00000394576|PCDHGA2;ENSG00000253485|ENST00000518069|PCDHGA5;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253910|ENST00000522605|PCDHGB2;ENSG00000253305|ENST00000520790|PCDHGB6;ENSG00000254122|ENST00000398594|PCDHGB7;ENSG00000262209|ENST00000576222|PCDHGB3;ENSG00000254221|ENST00000523390|PCDHGB1;ENSG00000253953|ENST00000519479|PCDHGB4;ENSG00000262576|ENST00000571252|PCDHGA4;ENSG00000242419|ENST00000306593|PCDHGC4;ENSG00000240764|ENST00000252087|PCDHGC5;ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000253873|ENST00000398587|PCDHGA11;ENSG00000261934|ENST00000573521|PCDHGA9	ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000242419|ENST00000306593|PCDHGC4;ENSG00000240764|ENST00000252087|PCDHGC5;ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000261934|ENST00000573521|PCDHGA9	ENSG00000240184|ENST00000308177|PCDHGC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.30841064453125	2	491.261259	980.507966	0.57899	0.00028443	-0.27165	-0.00013345	0.30734	0.00015098	491.2609876965332	51.03	0.64399	51.04	50.729	51.373	0.0095634					84	24	5	0	0	0	0.28547	1	11850	11850		39.95	39.95	1	847020			41220	8518;8546;8524;8603;8606;8664	23865	23866	50171	50171					0.01693204617322408
RYGPQFTL	8	Unmodified	_RYGPQFTL_					0	0	0		ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000276547|ENST00000617380|PCDHGB5;ENSG00000253846|ENST00000398610|PCDHGA10;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000253537|ENST00000518325|PCDHGA7;ENSG00000253731|ENST00000517434|PCDHGA6;ENSG00000253159|ENST00000252085|PCDHGA12;ENSG00000081853|ENST00000394576|PCDHGA2;ENSG00000253485|ENST00000518069|PCDHGA5;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253910|ENST00000522605|PCDHGB2;ENSG00000253305|ENST00000520790|PCDHGB6;ENSG00000254122|ENST00000398594|PCDHGB7;ENSG00000262209|ENST00000576222|PCDHGB3;ENSG00000254221|ENST00000523390|PCDHGB1;ENSG00000253953|ENST00000519479|PCDHGB4;ENSG00000262576|ENST00000571252|PCDHGA4;ENSG00000242419|ENST00000306593|PCDHGC4;ENSG00000240764|ENST00000252087|PCDHGC5;ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000253873|ENST00000398587|PCDHGA11;ENSG00000261934|ENST00000573521|PCDHGA9	ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000242419|ENST00000306593|PCDHGC4;ENSG00000240764|ENST00000252087|PCDHGC5;ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000261934|ENST00000573521|PCDHGA9	ENSG00000240184|ENST00000308177|PCDHGC3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	491.261259	980.507966	0.67807	0.00033311	-0.39013	-0.00019166	0.28794	0.00014145	491.2610249216097	50.959	0.70002	50.959	50.654	51.354	0	-0.04523	-0.00012528	NaN	41.84	69	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	816200			41221	8518;8546;8524;8603;8606;8664	23865	23866							0.01693204617322408
RYGPVFTI	8	Unmodified	_RYGPVFTI_					0	0	0		ENSG00000197838|ENST00000330436|CYP2A13;ENSG00000255974|ENST00000301141|CYP2A6	ENSG00000197838|ENST00000330436|CYP2A13	ENSG00000197838|ENST00000330436|CYP2A13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7658996582031	2	476.766178	951.517802	0.84732	0.00040397	-0.58866	-0.00028065	0.25866	0.00012332	476.76577175370255	56.061	0.74098	56.061	55.787	56.528	0					45	26	2	0	0	0	0.22	1	13431	13431		39.957	9.7325	1	2218200			41222	8002	23866	23867	50172	50172					0.04010392622706149
RYGPVFTI	8	Unmodified	_RYGPVFTI_					0	0	0		ENSG00000197838|ENST00000330436|CYP2A13;ENSG00000255974|ENST00000301141|CYP2A6	ENSG00000197838|ENST00000330436|CYP2A13	ENSG00000197838|ENST00000330436|CYP2A13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7664794921875	2	476.766178	951.517802	0.75922	0.00036197	-0.38718	-0.00018459	0.37205	0.00017738	476.76584661734677	56.013	0.70748	56.084	55.828	56.536	0.070885					52	25	3	0	0	0	0.22	1	13387	13387		39.957	9.7325	1	2257000			41223	8002	23866	23867	50173	50173					0.04010392622706149
RYGPVFTI	8	Unmodified	_RYGPVFTI_					0	0	0		ENSG00000197838|ENST00000330436|CYP2A13;ENSG00000255974|ENST00000301141|CYP2A6	ENSG00000197838|ENST00000330436|CYP2A13	ENSG00000197838|ENST00000330436|CYP2A13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	476.766178	951.517802	0.84877	0.00040466	-0.40404	-0.00019263	0.44473	0.00021203	476.7658464770711	56.237	0.59935	56.218	55.942	56.541	-0.019077	0.097091	4.5337E-05	NaN	39.957	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2543100			41224	8002	23866	23867							0.04010392622706149
RYGSDFYSM	9	Oxidation (M)	_RYGSDFYSM(Oxidation (M))_		RYGSDFYSM(1)		RYGSDFYSM(64)	0	0	1		ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2;ENSG00000196704|ENST00000359904|AMZ2	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.23486328125	2	571.234581	1140.45461	0.34119	0.0001949	0.15278	8.7275E-05	0.49398	0.00028218	571.2345708241356	36.405	0.81669	36.405	36.142	36.959	0					61	28	3	0	0	0	0.051692	1	7395	7395		63.961	37.077	1	1148900			41225	7897	23867	23868	50174	50174		860			-0.10999960947515319
RYGSDFYSM	9	Oxidation (M)	_RYGSDFYSM(Oxidation (M))_		RYGSDFYSM(1)		RYGSDFYSM(70)	0	0	1		ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2;ENSG00000196704|ENST00000359904|AMZ2	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2347412109375	2	571.234581	1140.45461	0.52024	0.00029718	0.13369	7.637E-05	0.65393	0.00037355	571.2344572028851	36.293	0.61183	36.375	36.117	36.729	0.082355					55	21	3	0	0	0	0.059987	1	7376	7376		70.332	43.448	1	1257700			41226	7897	23867	23868	50175	50175		860			-0.10999960947515319
RYGSDFYSM	9	Oxidation (M)	_RYGSDFYSM(Oxidation (M))_		RYGSDFYSM(1)		RYGSDFYSM(70)	0	0	1		ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2;ENSG00000196704|ENST00000359904|AMZ2	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	ENST00000584350.1_1_17:66246608-66253107:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.234619140625	2	571.234581	1140.45461	0.60813	0.00034738	-0.17691	-0.00010106	0.43122	0.00024633	571.234412276168	36.238	0.80679	36.324	36.085	36.892	0.08625					63	28	3	0	0	0	0.059987	1	7327	7327		70.332	43.448	1	1069900			41227	7897	23867	23868	50176	50176		860			-0.10999960947515319
RYHATVAGTFL	11	Unmodified	_RYHATVAGTFL_					0	0	0			REV__ENST00000463152.5_1_7:103824789-103838202:-|nuORF	REV__ENST00000463152.5_1_7:103824789-103838202:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.3302612304688	2	618.330205	1234.64586	0.32235	0.00019932	0.67716	0.00041871	0.99951	0.00061803	618.3308359416973	45.692	0.56688	45.752	45.253	45.819	0.059834					32	19	2	0	0	0	0.39802	1	10235	10235		11.495	0	1	223740	+		41228	21245	23868	23869	50177	50177					0.037919081459449444
RYHRCIPYTL	10	Unmodified	_RYHRCIPYTL_					0	0	0			REV__ENST00000312561.8_2_12:32134292-32134358:+|nuORF	REV__ENST00000312561.8_2_12:32134292-32134358:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.533935546875	3	441.232647	1320.67611	0.17792	7.8504E-05	2.915	0.0012862	3.0929	0.0013647	441.2342216872429	30.236	0.25031	30.264	30.103	30.354	0.027946					13	8	2	0	0	0	0.31994	1	5529	5529		5.4027	3.15	1	43379	+		41229	19911	23869	23870	50178	50178					0.028599435394880857
RYIANTVEL	9	Unmodified	_RYIANTVEL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2;RPN2|p.D355Y|1|0.26|ENSG00000118705|chr20:37213836-37213836|G/T|missense_variant	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7986450195312	2	539.798206	1077.58186	0.67413	0.00036389	-0.22534	-0.00012164	0.44879	0.00024225	539.7983118211374	45.382	2.3127	45.382	44.961	47.274	0					193	83	5	0	0	0	0.00019464	5	10132	10096;10132;10171;10215;10275		133.05	54.324	1	31396000			41230	2840	23870	23871	50179;50180;50181;50182;50183	50180					0.0461712798901317
RYIANTVEL	9	Unmodified	_RYIANTVEL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2;RPN2|p.D355Y|1|0.26|ENSG00000118705|chr20:37213836-37213836|G/T|missense_variant	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7991333007812	2	539.798206	1077.58186	0.66043	0.0003565	-0.078997	-4.2642E-05	0.58144	0.00031386	539.798529519731	45.211	1.4252	45.279	44.979	46.404	0.068569					126	50	5	0	0	0	0.00019464	4	10083	10034;10083;10133;10179		133.05	50.523	1	33923000			41231	2840	23870	23871	50184;50185;50186;50187	50185					0.0461712798901317
RYIANTVEL	9	Unmodified	_RYIANTVEL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2;RPN2|p.D355Y|1|0.26|ENSG00000118705|chr20:37213836-37213836|G/T|missense_variant	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7969970703125	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.057	1	45.132	44.632	45.632	0.075047								0	0	0	0.0060707	1	10029	10029		86.332	24.73	1				41232	2840	23870	23871	50188	50188					0.0461712798901317
RYIANTVEL	9	Unmodified	_RYIANTVEL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2;RPN2|p.D355Y|1|0.26|ENSG00000118705|chr20:37213836-37213836|G/T|missense_variant	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7987060546875	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.076	1	45.151	44.651	45.651	0.075047								0	0	0	0.00061386	1	10035	10035		100.09	36.13	1				41233	2840	23870	23871	50189	50189					0.0461712798901317
RYIANTVEL	9	Unmodified	_RYIANTVEL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2;RPN2|p.D355Y|1|0.26|ENSG00000118705|chr20:37213836-37213836|G/T|missense_variant	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7991943359375	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.226	1	45.3	44.8	45.8	0.074474								0	0	0	1.068E-10	1	10081	10081		145.13	52.476	1				41234	2840	23870	23871	50190	50190					0.0461712798901317
RYIANTVEL	9	Unmodified	_RYIANTVEL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2;RPN2|p.D355Y|1|0.26|ENSG00000118705|chr20:37213836-37213836|G/T|missense_variant	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7988891601562	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.356	1	45.421	44.921	45.921	0.065048								0	0	0	2.1359E-06	1	10121	10121		121.53	48.566	1				41235	2840	23870	23871	50191	50191					0.0461712798901317
RYIANTVEL	9	Unmodified	_RYIANTVEL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2;RPN2|p.D355Y|1|0.26|ENSG00000118705|chr20:37213836-37213836|G/T|missense_variant	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7986450195312	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.501	1	45.567	45.067	46.067	0.065048								0	0	0	0.00037335	1	10165	10165		106.94	33.972	1				41236	2840	23870	23871	50192	50192					0.0461712798901317
RYIDRIHIF	9	Unmodified	_RYIDRIHIF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.5682373046875	3	411.568135	1231.68258	0.20981	8.635E-05	-0.0987	-4.0622E-05	0.11111	4.5729E-05	411.568147837703	47.695	1.4993	47.695	47.328	48.827	0					148	53	5	0	0	0	0.04846	5	10844	10798;10844;10888;10935;11006		53.47	36.421	1	14109000			41237	6781	23871	23872	50193;50194;50195;50196;50197	50194					0.07600204762502472
RYIDRIHIF	9	Unmodified	_RYIDRIHIF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.5682678222656	3	411.568135	1231.68258	0.45256	0.00018626	-0.48179	-0.00019829	-0.029231	-1.2031E-05	411.5680402918638	47.614	1.4774	47.662	47.321	48.799	0.04752					153	54	5	0	0	0	0.015535	5	10817	10770;10817;10865;10912;11007		70.929	49.129	1	15462000			41238	6781	23871	23872	50198;50199;50200;50201;50202	50199					0.07600204762502472
RYIDRIHIF	9	Unmodified	_RYIDRIHIF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	617.3505249023438	2	616.848564	1231.68258	0.43264	0.00026687	1.2451	0.00076807	1.6778	0.0010349	616.8491596755367	47.744	0.32755	47.791	47.539	47.866	0.047523					28	11	3	0	0	0	0.059984	1	10852	10852		89.401	67.864	1	723700			41239	6781	23871	23872	50203	50203					0.07600204762502472
RYIDRIHIF	9	Unmodified	_RYIDRIHIF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.56829833984375	3	411.568135	1231.68258	0.44129	0.00018162	-0.46642	-0.00019196	-0.025126	-1.0341E-05	411.5680177229667	47.624	1.5408	47.667	47.323	48.864	0.04332					147	57	5	0	0	0	0.067279	6	10814	10770;10814;10865;10937;10945;11010		46.475	28.612	1	15341000			41240	6781	23871	23872	50204;50205;50206;50207;50208;50209	50205					0.07600204762502472
RYIDRIHIF	9	Unmodified	_RYIDRIHIF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.8489990234375	2	616.848564	1231.68258	0.49584	0.00030586	1.1637	0.00071781	1.6595	0.0010237	616.8489855401913	47.725	0.31931	47.768	47.53	47.85	0.04332					25	11	3	0	0	0	0.0042709	2	10855	10825;10855		110.55	85.562	1	916330			41241	6781	23871	23872	50210;50211	50211					0.07600204762502472
RYIDTHNRV	9	Unmodified	_RYIDTHNRV_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;ENST00000502671.5_1_5:57749965-57753328:-|nuORF	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8023071289062	2	587.309803	1172.60505	0.12875	7.5617E-05	1.4214	0.00083479	1.5501	0.00091041	587.3102642618774	19.164	0.2911	19.164	19.034	19.325	0					12	9	2	0	0	0	0.25949	1	2176	2176		4.897	0	1	60749			41242	4661	23872	23873	50212	50212					0.025655668263198095
RYIFAKNLF	9	Unmodified	_RYIFAKNLF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3350219726562	2	586.334759	1170.65496	0.44675	0.00026195	0.20737	0.00012159	0.65412	0.00038353	586.3347664493436	55.188	1.0432	55.188	54.864	55.907	0					105	37	4	0	0	0	0.0023784	4	13175	13127;13175;13227;13282		107.19	74.882	1	4640600			41243	2597	23873	23874	50213;50214;50215;50216	50214					0.07646301502268216
RYIFAKNLF	9	Unmodified	_RYIFAKNLF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3350219726562	2	586.334759	1170.65496	0.52911	0.00031023	0.17981	0.00010543	0.70891	0.00041566	586.3347308339074	55.131	1.0095	55.202	54.871	55.88	0.070885					99	37	4	0	0	0	0.0013036	4	13129	13077;13129;13180;13237		118.89	80.921	1	4655100			41244	2597	23873	23874	50217;50218;50219;50220	50218					0.07646301502268216
RYIFAKNLF	9	Unmodified	_RYIFAKNLF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3350830078125	2	586.334759	1170.65496	0.37993	0.00022277	0.36643	0.00021485	0.74637	0.00043762	586.3348234297716	55.436	0.97356	55.417	55.104	56.078	-0.019077					93	35	4	0	0	0	0.00094673	3	13247	13207;13247;13305		123.45	77.43	1	6043800			41245	2597	23873	23874	50221;50222;50223	50222					0.07646301502268216
RYIFASNLY	9	Unmodified	_RYIFASNLY_					0	0	0		ENSG00000156136|ENST00000286648|DCK	ENSG00000156136|ENST00000286648|DCK	ENSG00000156136|ENST00000286648|DCK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.8008422851562	2	573.800749	1145.58694	0.20603	0.00011822	0.86056	0.00049379	1.0666	0.00061201	573.8009817842556	57.836	0.58084	57.836	57.578	58.159	0					43	20	3	0	0	0	0.0098873	1	13974	13974		79.596	41.445	1	585910			41246	5221	23874	23875	50224	50224					0.01997431851600595
RYIFASNLY	9	Unmodified	_RYIFASNLY_					0	0	0		ENSG00000156136|ENST00000286648|DCK	ENSG00000156136|ENST00000286648|DCK	ENSG00000156136|ENST00000286648|DCK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	573.800749	1145.58694	0.37919	0.00021758	0.62478	0.0003585	1.004	0.00057608	573.8009957894852	57.591	0.58814	57.677	57.465	58.053	0.085617	-0.14819	-0.00011139	NaN	79.596	39	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608010			41247	5221	23874	23875							0.01997431851600595
RYIFASNLY	9	Unmodified	_RYIFASNLY_					0	0	0		ENSG00000156136|ENST00000286648|DCK	ENSG00000156136|ENST00000286648|DCK	ENSG00000156136|ENST00000286648|DCK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	573.800749	1145.58694	0.31182	0.00017892	0.74969	0.00043017	1.0615	0.00060909	573.8010809211287	57.98	0.61074	57.962	57.69	58.3	-0.0172	0.13726	3.1958E-05	NaN	79.596	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501210			41248	5221	23874	23875							0.01997431851600595
RYIHKLYDL	9	Unmodified	_RYIHKLYDL_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5646057128906	3	407.564391	1219.67134	0.046312	1.8875E-05	0.14081	5.7388E-05	0.18712	7.6263E-05	407.56428966479143	36.242	1.263	36.242	35.8	37.063	0					106	45	3	0	0	0	0.25386	1	7381	7381		15.739	5.4234	1	523670			41249	3371	23875	23876	50225	50225					0.07029382668360995
RYIHKLYDL	9	Unmodified	_RYIHKLYDL_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5643310546875	3	407.564391	1219.67134	0.13829	5.636E-05	0.16706	6.8089E-05	0.30535	0.00012445	407.5643471855439	36.02	1.183	36.102	35.874	37.057	0.082355					87	42	3	0	0	0	0.30266	1	7366	7366		8.4443	1.4072	1	555780			41250	3371	23875	23876	50226	50226					0.07029382668360995
RYIHKLYDL	9	Unmodified	_RYIHKLYDL_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5644226074219	3	407.564391	1219.67134	0.33633	0.00013708	-0.12122	-4.9404E-05	0.21512	8.7673E-05	407.5642417457937	36.121	1.2373	36.207	35.898	37.135	0.08625					97	44	3	0	0	0	0.12765	1	7304	7304		34.222	13.641	1	569650			41251	3371	23875	23876	50227	50227					0.07029382668360995
RYIHKLYDL	9	Unmodified	_RYIHKLYDL_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	407.564391	1219.67134	0.13829	5.636E-05	0.16706	6.8089E-05	0.30535	0.00012445	407.5643471855439	36.02	1.183	36.102	35.874	37.057	0.082355	-0.08161	0.00019142	NaN	34.222	87	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	555780			41252	3371	23875	23876							0.07029382668360995
RYIHPQQEAF	10	Unmodified	_RYIHPQQEAF_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	644.8262329101562	2	644.825286	1287.63602	0.36353	0.00023441	0.35001	0.00022569	0.71353	0.0004601	644.8254199139243	31.337	0.32942	31.378	31.178	31.507	0.040991					21	11	2	0	0	0	0.19345	1	5853	5853		33.445	24.062	1	225060			41253	964	23876	23877	50228	50228					0.003707201405404703
RYIHPQQEAF	10	Unmodified	_RYIHPQQEAF_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	644.825286	1287.63602	0.20244	0.00013054	0.66868	0.00043118	0.87112	0.00056172	644.8257006604144	31.414	0.38263	31.414	31.171	31.553	0	0.023757	0.0001598	NaN	33.445	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234090			41254	964	23876	23877							0.003707201405404703
RYIHPQQEAF	10	Unmodified	_RYIHPQQEAF_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	644.825286	1287.63602	0.16686	0.0001076	0.54445	0.00035108	0.71132	0.00045868	644.8255796876508	31.336	0.33723	31.379	31.237	31.574	0.042366	-0.011422	-4.0589E-07	NaN	33.445	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194010			41255	964	23876	23877							0.003707201405404703
RYIKALETL	9	Unmodified	_RYIKALETL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.H531Qfs*10|1|0.24|ENSG00000113522|chr5:132591362-132591365|CATA/-|frameshift_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8319702148438	2	553.832049	1105.64954	0.17078	9.4581E-05	-0.593	-0.00032842	-0.42222	-0.00023384	553.8319005557321	42.042	1.2218	42.042	41.786	43.008	0					110	45	3	0	0	0	0.003317	3	9125	9080;9125;9179		99.755	48.125	1	3943100			41256	2508	23877	23878	50229;50230;50231	50230					0.10094577919812764
RYIKALETL	9	Unmodified	_RYIKALETL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.H531Qfs*10|1|0.24|ENSG00000113522|chr5:132591362-132591365|CATA/-|frameshift_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8327026367188	2	553.832049	1105.64954	0.39125	0.00021669	-0.56973	-0.00031553	-0.17847	-9.8845E-05	553.8318359202779	41.711	1.2843	41.801	41.611	42.896	0.090252					96	50	2	0	0	0	0.0028542	3	8995	8995;9038;9089		103.42	47.242	1	4127700			41257	2508	23877	23878	50232;50233;50234	50232					0.10094577919812764
RYIKALETL	9	Unmodified	_RYIKALETL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;RAD50|p.H531Qfs*10|1|0.24|ENSG00000113522|chr5:132591362-132591365|CATA/-|frameshift_variant	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.83251953125	2	553.832049	1105.64954	0.58983	0.00032666	-0.28752	-0.00015924	0.30231	0.00016743	553.8320060534667	41.645	1.1773	41.741	41.6	42.778	0.096622					81	44	2	0	0	0	0.0019475	2	8978	8978;9025		110.67	56.842	1	6447900			41258	2508	23877	23878	50235;50236	50235					0.10094577919812764
RYIKQGLL	8	Unmodified	_RYIKQGLL_					0	0	0			REV__ENST00000473053.5_1_4:6055704-6058424:-|nuORF	REV__ENST00000473053.5_1_4:6055704-6058424:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2720642089844	2	495.808377	989.6022	0.60871	0.0003018	-0.46941	-0.00023274	0.13929	6.9062E-05	495.8079319903138	45.967	0.27911	45.967	45.832	46.111	0					21	9	3	0	0	0	0.34046	1	10338	10338		14.582	2.0501	1	186560	+		41259	21378	23878	23879	50237	50237					0.10698343439469227
RYIKQGLL	8	Unmodified	_RYIKQGLL_					0	0	0			REV__ENST00000473053.5_1_4:6055704-6058424:-|nuORF	REV__ENST00000473053.5_1_4:6055704-6058424:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	495.808377	989.6022	0.32019	0.00015875	0.099022	4.9096E-05	0.41921	0.00020785	495.80822327971555	45.74	0.36812	45.8	45.647	46.015	0.059834	-0.083505	0.00013059	NaN	14.582	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165170	+		41260	21378	23878	23879							0.10698343439469227
RYILDGSGYF	10	Unmodified	_RYILDGSGYF_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.7955932617188	2	595.795663	1189.57677	0.50553	0.00030119	0.51603	0.00030745	1.0216	0.00060864	595.7956435261602	62.233	0.88479	62.233	61.996	62.881	0					84	32	4	0	0	0	0.0082636	2	15335	15335;15384		84.522	58.254	1	1175800			41261	7299	23879	23880	50238;50239	50238					-0.010431758736103802
RYILDGSGYF	10	Unmodified	_RYILDGSGYF_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.7957763671875	2	595.795663	1189.57677	0.45067	0.00026851	0.54355	0.00032384	0.99422	0.00059235	595.7956044472284	62.205	1.0393	62.302	62.058	63.097	0.096985					86	37	4	0	0	0	0.0082636	3	15309	15309;15358;15413		84.522	53.254	1	1344100			41262	7299	23879	23880	50240;50241;50242	50240					-0.010431758736103802
RYILDGSGYF	10	Unmodified	_RYILDGSGYF_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.7963256835938	2	595.795663	1189.57677	0.44376	0.00026439	0.33964	0.00020236	0.78341	0.00046675	595.7956168182084	62.29	1.039	62.282	61.955	62.994	-0.0085564					94	38	4	0	0	0	0.014191	2	15321	15321;15369		78.06	50.432	1	1454700			41263	7299	23879	23880	50243;50244	50243					-0.010431758736103802
RYILDVHGL	9	Unmodified	_RYILDVHGL_					0	0	0		ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.30908203125	2	543.308741	1084.60293	0.84646	0.00045989	-0.047969	-2.6062E-05	0.79849	0.00043383	543.3087080487439	50.859	0.60284	50.859	50.595	51.198	0					53	21	3	0	0	0	0.03069	2	11812	11812;11862		60.074	11.728	1	1836000			41264	685	23880	23881	50245;50246	50245					0.06401138088517655
RYILDVHGL	9	Unmodified	_RYILDVHGL_					0	0	0		ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3091430664062	2	543.308741	1084.60293	0.81841	0.00044465	0.034554	1.8774E-05	0.85297	0.00046342	543.3087608783079	50.867	0.66792	50.914	50.577	51.245	0.046574					68	24	4	0	0	0	0.016723	2	11858	11806;11858		69.105	20.759	1	1560000			41265	685	23880	23881	50247;50248	50248					0.06401138088517655
RYILDVHGL	9	Unmodified	_RYILDVHGL_					0	0	0		ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3092041015625	2	543.308741	1084.60293	0.87333	0.00047449	0.073484	3.9924E-05	0.94681	0.00051441	543.3087688063067	50.941	0.64613	50.95	50.701	51.347	0.0095634					71	24	4	0	0	0	0.03069	2	11833	11833;11895		60.074	25.971	1	1905100			41266	685	23880	23881	50249;50250	50249					0.06401138088517655
RYINNPLLI	9	Unmodified	_RYINNPLLI_					0	0	0		ENST00000555422.5_1_14:76165571-76198516:+|nuORF;nc|ENSG00000119685|Q6EMB2-3|TTLL5;TTLL5|p.S1246Pfs*10|1|0.21|ENSG00000119685|chr14:75882897-75882897|T/-|frameshift_variant;ENSG00000119685|ENST00000298832|TTLL5	ENST00000555422.5_1_14:76165571-76198516:+|nuORF	ENST00000555422.5_1_14:76165571-76198516:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3325805664062	2	558.332216	1114.64988	-0.025764	-1.4385E-05	1.3704	0.00076516	1.3447	0.00075078	558.3327619417038	59.886	0.47592	59.886	59.65	60.126	0					27	16	2	0	0	0	0.12846	1	14609	14609		34.102	1.797	1	1070400			41267	2897	23881	23882	50251	50251					0.0971399763966474
RYINNPLLI	9	Unmodified	_RYINNPLLI_					0	0	0		ENST00000555422.5_1_14:76165571-76198516:+|nuORF;nc|ENSG00000119685|Q6EMB2-3|TTLL5;TTLL5|p.S1246Pfs*10|1|0.21|ENSG00000119685|chr14:75882897-75882897|T/-|frameshift_variant;ENSG00000119685|ENST00000298832|TTLL5	ENST00000555422.5_1_14:76165571-76198516:+|nuORF	ENST00000555422.5_1_14:76165571-76198516:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3324584960938	2	558.332216	1114.64988	-0.094648	-5.2845E-05	1.8381	0.0010263	1.7434	0.00097342	558.3326751926866	59.766	0.61359	59.861	59.491	60.105	0.095093					55	21	4	0	0	0	0.088391	1	14548	14548		39.957	5.77	1	801450			41268	2897	23881	23882	50252	50252					0.0971399763966474
RYINNPLLI	9	Unmodified	_RYINNPLLI_					0	0	0		ENST00000555422.5_1_14:76165571-76198516:+|nuORF;nc|ENSG00000119685|Q6EMB2-3|TTLL5;TTLL5|p.S1246Pfs*10|1|0.21|ENSG00000119685|chr14:75882897-75882897|T/-|frameshift_variant;ENSG00000119685|ENST00000298832|TTLL5	ENST00000555422.5_1_14:76165571-76198516:+|nuORF	ENST00000555422.5_1_14:76165571-76198516:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3328247070312	2	558.332216	1114.64988	0.20914	0.00011677	1.6312	0.00091073	1.8403	0.0010275	558.3327213643627	59.861	0.5946	59.849	59.49	60.085	-0.011486					44	20	3	0	0	0	0.088391	1	14608	14608		39.957	5.77	1	758410			41269	2897	23881	23882	50253	50253					0.0971399763966474
RYINNPLLI	9	Unmodified	_RYINNPLLI_					0	0	0		ENST00000555422.5_1_14:76165571-76198516:+|nuORF;nc|ENSG00000119685|Q6EMB2-3|TTLL5;TTLL5|p.S1246Pfs*10|1|0.21|ENSG00000119685|chr14:75882897-75882897|T/-|frameshift_variant;ENSG00000119685|ENST00000298832|TTLL5	ENST00000555422.5_1_14:76165571-76198516:+|nuORF	ENST00000555422.5_1_14:76165571-76198516:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	558.332216	1114.64988	-0.025764	-1.4385E-05	1.3704	0.00076516	1.3447	0.00075078	558.3327619417038	59.886	0.47592	59.886	59.65	60.126	0	0.020653	-0.00019297	NaN	39.957	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1070400			41270	2897	23881	23882							0.0971399763966474
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2774353027344	2	505.276909	1008.53927	0.57458	0.00029032	-0.10344	-5.2267E-05	0.47114	0.00023805	505.277740699996	47.891	3.2382	47.891	47.608	50.846	0					365	117	5	0	0	0	0.0028626	15	10864	10864;10913;10956;11001;11046;11093;11140;11185;11235;11286;11336;11385;11629;11681;11731		103.35	51.085	1	646260000			41271	732	23882	23883	50254;50255;50256;50257;50258;50259;50260;50261;50262;50263;50264;50265;50266;50267;50268	50254					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7496032714844	2	505.276909	1008.53927	0.41333	0.00020885	-1.136	-0.00057402	-0.72271	-0.00036517	505.27614699478835	74.953	0.86241	74.953	74.703	75.565	0					44	30	2	0	0	0	0.20651	1	19266	19266		26.884	5.137	1	199030			41272	732	23882	23883	50269	50269					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7496032714844	2	505.276909	1008.53927	0.059197	2.9911E-05	-0.82722	-0.00041797	-0.76802	-0.00038806	505.27626698979566	75.853	0.63832	75.853	75.503	76.141	0					49	22	3	0	0	0	0.22674	1	19417	19417		22.736	7.898	1	164270			41273	732	23882	23883	50270	50270					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2772521972656	2	505.276909	1008.53927	0.3865	0.00019529	0.42332	0.0002139	0.80982	0.00040918	505.2769514830333	52.455	2.9505	52.455	51.676	54.626	0					152	108	2	0	0	0	0.12563	1	12379	12379		47.749	17.524	1	864820			41274	732	23882	23883	50271	50271					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2772521972656	2	505.276909	1008.53927	0.54356	0.00027465	1.0637	0.00053747	1.6073	0.00081212	505.2775305535388	51.167	1.3486	51.167	50.353	51.702	0					77	49	2	0	0	0	0.09064	1	11799	11799		56.177	20.05	1	1973800			41275	732	23882	23883	50272	50272					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2779541015625	2	505.276909	1008.53927	0.68791	0.00034759	-0.19922	-0.00010066	0.48869	0.00024692	505.27769685829753	47.833	3.4201	47.881	47.51	50.93	0.047523					399	126	5	0	0	0	0.0023784	16	10984	10842;10893;10943;10984;11034;11084;11133;11174;11218;11268;11312;11359;11405;11613;11660;11705		107.19	54.919	1	635090000			41276	732	23882	23883	50273;50274;50275;50276;50277;50278;50279;50280;50281;50282;50283;50284;50285;50286;50287;50288	50276					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7995300292969	2	505.276909	1008.53927	0.49727	0.00025126	-0.6687	-0.00033788	-0.17143	-8.6618E-05	505.2763148589279	84.916	0.89354	84.997	84.885	85.778	0.080887					51	34	2	0	0	0	0.22674	1	22404	22404		22.736	7.898	1	141360			41277	732	23882	23883	50289	50289					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7977294921875	2	505.276909	1008.53927	0.3899	0.00019701	-0.59282	-0.00029954	-0.20293	-0.00010254	505.27674442357176	66.137	2.2952	66.221	65.455	67.75	0.083832					124	82	2	0	0	0	0.18123	1	16968	16968		34.402	9.0024	1	240160			41278	732	23882	23883	50290	50290					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2772216796875	2	505.276909	1008.53927	0.44154	0.0002231	-0.060885	-3.0764E-05	0.38066	0.00019234	505.2768816056753	52.769	4.2987	52.82	51.729	56.027	0.050575					259	159	3	0	0	0	0.09064	1	12402	12402		56.177	20.05	1	1125500			41279	732	23882	23883	50291	50291					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7845764160156	2	505.276909	1008.53927	0.37238	0.00018816	0.99217	0.00050132	1.3645	0.00068947	505.27744278395073	62.674	1.7898	62.771	62.2	63.99	0.096985					113	64	2	0	0	0	0.22674	1	15833	15833		22.736	3.4793	1	380250			41280	732	23882	23883	50292	50292					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2773132324219	2	505.276909	1008.53927	0.53031	0.00026795	-0.03419	-1.7276E-05	0.49612	0.00025068	505.27777609403915	47.847	3.4376	47.891	47.561	50.999	0.04332					411	127	6	0	0	0	0.0016361	15	10831	10831;10880;10924;10965;11013;11064;11111;11164;11213;11259;11309;11358;11402;11666;11717		114.65	62.381	1	647890000			41281	732	23882	23883	50293;50294;50295;50296;50297;50298;50299;50300;50301;50302;50303;50304;50305;50306;50307	50293					0.035337776513983954
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2771911621094	2	505.276909	1008.53927	0.19936	0.00010073	0.38	0.00019201	0.57936	0.00029274	505.277250340313	52.413	1.5739	52.412	51.764	53.338	-0.00080872					121	57	3	0	0	0	0.12563	1	12422	12422		47.749	11.622	1	909820			41282	732	23882	23883	50308	50308					0.035337776513983954
RYIRDAHTF	9	Unmodified	_RYIRDAHTF_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8070678710938	2	589.806897	1177.59924	0.22489	0.00013264	-0.061042	-3.6003E-05	0.16385	9.664E-05	589.8068632949334	23.632	0.49832	23.632	23.419	23.917	0					36	16	3	0	0	0	0.16283	1	3510	3510		29.082	16.039	1	193940			41283	5431	23883	23884	50309	50309					0.017544683146297757
RYIRDAHTF	9	Unmodified	_RYIRDAHTF_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8067016601562	2	589.806897	1177.59924	0.27331	0.0001612	-0.10623	-6.2658E-05	0.16708	9.8545E-05	589.8068175217169	23.774	0.52327	23.701	23.501	24.024	-0.072559					41	17	3	0	0	0	0.23767	1	3553	3553		18.146	10.236	1	173790			41284	5431	23883	23884	50310	50310					0.017544683146297757
RYIRDAHTF	9	Unmodified	_RYIRDAHTF_					0	0	0		ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	589.806897	1177.59924	0.46322	0.00027321	-0.59703	-0.00035213	-0.13381	-7.8924E-05	589.8066270162598	23.828	0.45917	23.789	23.534	23.993	-0.038927	0.081375	-0.00046366	NaN	29.082	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177210			41285	5431	23883	23884							0.017544683146297757
RYISPDQLADL	11	Unmodified	_RYISPDQLADL_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	645.83837890625	2	645.838059	1289.66157	0.41724	0.00026947	0.46058	0.00029746	0.87782	0.00056693	645.8384032843084	58.969	0.47572	58.969	58.739	59.215	0					29	16	3	0	0	0	0.25663	1	14349	14349		26.121	17.677	1	198190			41286	1028	23884	23885	50311	50311					0.02832149872347145
RYISPDQLADL	11	Unmodified	_RYISPDQLADL_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	645.838059	1289.66157	0.45077	0.00029112	0.43056	0.00027807	0.88133	0.0005692	645.8383959885415	58.886	0.56609	58.977	58.645	59.211	0.091301	0.0093682	-0.00010917	NaN	26.121	28	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230900			41287	1028	23884	23885							0.02832149872347145
RYISPDQLADL	11	Unmodified	_RYISPDQLADL_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	645.838059	1289.66157	0.45289	0.00029249	1.0283	0.00066413	1.4812	0.00095663	645.8390368397598	58.971	0.4257	58.957	58.746	59.171	-0.014267	-0.010564	0.00066295	NaN	26.121	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214360			41288	1028	23884	23885							0.02832149872347145
RYISQPPLL	9	Unmodified	_RYISQPPLL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.8192138671875	2	543.818941	1085.62333	0.42803	0.00023277	0.12828	6.9763E-05	0.55631	0.00030253	543.8189267458428	52.115	0.82027	52.115	51.809	52.63	0					70	29	4	0	0	0	0.086462	1	12242	12242		40.239	5.8375	1	1959200			41289	2724	23885	23886	50312	50312					0.08394308748324875
RYISQPPLL	9	Unmodified	_RYISQPPLL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8192749023438	2	543.818941	1085.62333	0.60182	0.00032728	-0.077226	-4.1997E-05	0.5246	0.00028528	543.8188286565272	52.056	0.70689	52.107	51.846	52.553	0.050575					72	25	4	0	0	0	0.086462	1	12219	12219		40.239	5.8375	1	1845900			41290	2724	23885	23886	50313	50313					0.08394308748324875
RYISQPPLL	9	Unmodified	_RYISQPPLL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.33984375	2	543.818941	1085.62333	0.39648	0.00021562	0.19808	0.00010772	0.59456	0.00032333	543.818939688251	52.16	0.81128	52.159	51.876	52.688	-0.00081253					85	29	4	0	0	0	0.15763	1	12184	12184		29.841	2.2118	1	2041600			41291	2724	23885	23886	50314	50314					0.08394308748324875
RYISQPPLL	9	Unmodified	_RYISQPPLL_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.818941	1085.62333	0.39648	0.00021562	0.19808	0.00010772	0.59456	0.00032333	543.818939688251	52.16	0.81128	52.159	51.876	52.688	-0.00081253	0.031964	0.00012652	NaN	40.239	85	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2041600			41292	2724	23885	23886							0.08394308748324875
RYISVLKVF	9	Unmodified	_RYISVLKVF_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.3179321289062	2	562.844959	1123.67537	0.79294	0.0004463	-1.6464	-0.00092665	-0.85343	-0.00048035	562.8445482564825	56.164	0.35979	56.145	55.853	56.213	-0.019081					31	12	4	0	0	0	0.25706	1	13369	13369		6.7232	0	1	564190			41293	644	23886	23887	50315	50315					0.11847472162071426
RYISVLKVF	9	Unmodified	_RYISVLKVF_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	562.844959	1123.67537	0.85894	0.00048345	-0.53443	-0.0003008	0.32451	0.00018265	562.844570971823	55.924	0.28941	55.924	55.732	56.021	0	-0.091927	0.000177	NaN	6.7232	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389550			41294	644	23886	23887							0.11847472162071426
RYISVLKVF	9	Unmodified	_RYISVLKVF_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	562.844959	1123.67537	0.77478	0.00043608	-0.38205	-0.00021504	0.39273	0.00022104	563.3461503488219	55.907	0.29937	55.978	55.777	56.077	0.070885	-0.037571	0.00034852	NaN	6.7232	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	688420			41295	644	23886	23887							0.11847472162071426
RYITKGNLF	9	Unmodified	_RYITKGNLF_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B;ENST00000482826.1_1_2:55795287-55800821:-|nuORF	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;ENST00000482826.1_1_2:55795287-55800821:-|nuORF	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.802490234375	2	556.316566	1110.61858	0.15672	8.7186E-05	-0.26167	-0.00014557	-0.10495	-5.8387E-05	556.3164482681536	39.094	0.91351	39.187	38.974	39.887	0.092674					74	32	4	0	0	0	0.20381	1	8178	8178		29.841	16.798	1	1048800			41296	8715;11052	23887	23888	50316	50316					0.0676942460556802
RYITKGNLF	9	Unmodified	_RYITKGNLF_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B;ENST00000482826.1_1_2:55795287-55800821:-|nuORF	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;ENST00000482826.1_1_2:55795287-55800821:-|nuORF	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8026733398438	2	556.316566	1110.61858	0.34541	0.00019216	-0.6626	-0.00036862	-0.31719	-0.00017646	556.3162869765123	39.138	0.83103	39.238	38.986	39.817	0.099403					65	29	3	0	0	0	0.24471	1	8170	8170		17.113	12.357	1	1199000			41297	8715;11052	23887	23888	50317	50317					0.0676942460556802
RYITKGNLF	9	Unmodified	_RYITKGNLF_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B;ENST00000482826.1_1_2:55795287-55800821:-|nuORF	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;ENST00000482826.1_1_2:55795287-55800821:-|nuORF	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	556.316566	1110.61858	-0.043844	-2.4391E-05	-0.39058	-0.00021729	-0.43442	-0.00024168	556.3164444042304	39.245	0.92957	39.245	39.012	39.942	0	0.022066	-1.8789E-05	NaN	29.841	75	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	969810			41298	8715;11052	23887	23888							0.0676942460556802
RYIYNREEF	9	Unmodified	_RYIYNREEF_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1;ENST00000471184.5_1_6:33048250-33051373:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.96002197265625	3	430.547288	1288.62004	-0.37893	-0.00016315	-0.21038	-9.0579E-05	-0.58931	-0.00025372	430.5471693491224	35.448	0.54892	35.448	35.144	35.693	0					37	19	3	0	0	0	0.24471	1	7086	7086		12.175	5.9404	1	345500			41299	8440	23888	23889	50318	50318					-0.012729860963418105
RYIYNREEF	9	Unmodified	_RYIYNREEF_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1;ENST00000471184.5_1_6:33048250-33051373:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.9601135253906	3	430.547288	1288.62004	-0.22275	-9.5904E-05	-0.79345	-0.00034162	-1.0162	-0.00043752	430.5470382156142	35.443	0.63384	35.519	35.182	35.816	0.075306					30	22	2	0	0	0	0.22674	1	7064	7064		12.175	1.6473	1	454210			41300	8440	23888	23889	50319	50319					-0.012729860963418105
RYKAPFHQL	9	Unmodified	_RYKAPFHQL_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3223876953125	2	580.322183	1158.62981	-0.043993	-2.553E-05	0.17231	9.9994E-05	0.12831	7.4464E-05	580.3221344525456	28.237	0.72097	28.237	28.008	28.729	0					31	24	2	0	0	0	0.11461	1	4904	4904		36.127	14.38	1	118330			41301	1740;5061	23889	23890	50320	50320					0.056842466997068186
RYKAPFHQL	9	Unmodified	_RYKAPFHQL_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3219604492188	2	580.322183	1158.62981	0.066676	3.8694E-05	0.095798	5.5594E-05	0.16247	9.4287E-05	580.3222399698291	28.258	0.4713	28.254	28.024	28.495	-0.0042572					24	16	2	0	0	0	0.11461	1	4909	4909		36.127	20.879	1	157970			41302	1740;5061	23889	23890	50321	50321					0.056842466997068186
RYKAPFHQL	9	Unmodified	_RYKAPFHQL_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.322998046875	2	580.322183	1158.62981	-0.049188	-2.8545E-05	0.088526	5.1373E-05	0.039337	2.2828E-05	580.3221085841747	28.291	0.56158	28.291	27.963	28.524	0.0004673					26	19	2	0	0	0	0.16283	1	4923	4923		29.082	19.698	1	167540			41303	1740;5061	23889	23890	50322	50322					0.056842466997068186
RYKEENNDHL	10	Unmodified	_RYKEENNDHL_					0	0	0		ENSG00000138592|ENST00000307179|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF;nc|ENSG00000138592|P40818-2|USP8	ENSG00000138592|ENST00000307179|USP8	ENSG00000138592|ENST00000307179|USP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.8773498535156	3	439.877586	1316.61093	-0.17166	-7.551E-05	0.3681	0.00016192	0.19644	8.641E-05	439.877666315158	15.337	0.4633	15.337	15.127	15.591	0					39	15	3	0	0	0	0.32116	1	973	973		2.6312	1.8547	1	187450			41304	4158	23890	23891	50323	50323					-0.03471379452662404
RYKEENNDHL	10	Unmodified	_RYKEENNDHL_					0	0	0		ENSG00000138592|ENST00000307179|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF;nc|ENSG00000138592|P40818-2|USP8	ENSG00000138592|ENST00000307179|USP8	ENSG00000138592|ENST00000307179|USP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.21209716796875	3	439.877586	1316.61093	-0.127	-5.5864E-05	0.06191	2.7233E-05	-0.065089	-2.8631E-05	439.8775984459808	15.506	0.57213	15.396	15.151	15.723	-0.10981					44	19	3	0	0	0	0.39494	1	1037	1037		4.4062	2.1534	1	177950			41305	4158	23890	23891	50324	50324					-0.03471379452662404
RYKEENNDHL	10	Unmodified	_RYKEENNDHL_					0	0	0		ENSG00000138592|ENST00000307179|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF;nc|ENSG00000138592|P40818-2|USP8	ENSG00000138592|ENST00000307179|USP8	ENSG00000138592|ENST00000307179|USP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.8772888183594	3	439.877586	1316.61093	-0.13829	-6.0829E-05	0.25435	0.00011188	0.11606	5.1052E-05	439.87761242519576	15.533	0.51228	15.468	15.216	15.728	-0.064414					43	16	4	0	0	0	0.34535	1	1033	1033		13.519	6.8952	1	191370			41306	4158	23890	23891	50325	50325					-0.03471379452662404
RYKEHEDG	8	Unmodified	_RYKEHEDG_					0	0	0		ENST00000527755.5_1_11:119003111-119005205:+|nuORF;ENSG00000172273|ENST00000350777|HINFP	ENST00000527755.5_1_11:119003111-119005205:+|nuORF	ENST00000527755.5_1_11:119003111-119005205:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.8013305664062	2	517.238513	1032.46247	-0.017062	-8.8253E-06	-2.2831	-0.0011809	-2.3002	-0.0011898	517.237749462204	30.42	0.91986	30.447	29.864	30.784	0.027157					42	31	2	0	0	0	0.34092	1	5541	5541		13.508	1.8676	1	101870			41307	6616	23891	23892	50326	50326					-0.05246065635719788
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.8768005371094	3	421.876746	1262.60841	0.14463	6.1014E-05	-0.5278	-0.00022267	-0.38317	-0.00016165	421.87654387331725	48.42	0.86916	48.42	47.987	48.856	0					82	30	4	0	0	0	0.31867	1	11060	11060		11.518	0.61892	1	1032200			41308	6031	23892	23893	50327	50327					-0.012391831196737257
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.3115234375	2	632.31148	1262.60841	0.53783	0.00034007	-0.37599	-0.00023774	0.16184	0.00010233	632.3112884273012	48.394	0.72084	48.394	48.106	48.827	0					57	25	4	0	0	0	0.0092666	1	11068	11068		83.429	55.8	1	863060			41309	6031	23892	23893	50328	50328					-0.012391831196737257
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.21075439453125	3	421.876746	1262.60841	0.37907	0.00015992	-0.51685	-0.00021805	-0.13778	-5.8126E-05	421.87656747859245	48.299	0.7486	48.347	48.022	48.771	0.047523					64	27	3	0	0	0	0.34795	1	11032	11032		7.9454	0	1	1088700			41310	6031	23892	23893	50329	50329					-0.012391831196737257
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.3118286132812	2	632.31148	1262.60841	0.70873	0.00044814	-0.52585	-0.0003325	0.18288	0.00011564	632.3110943248312	48.277	0.7486	48.324	48.022	48.771	0.047523					60	27	3	0	0	0	0.058058	1	11053	11053		57.249	33.459	1	765560			41311	6031	23892	23893	50330	50330					-0.012391831196737257
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.3117065429688	2	632.31148	1262.60841	0.66574	0.00042096	-0.66851	-0.0004227	-0.0027631	-1.7472E-06	632.3112034784434	48.268	0.63411	48.312	48.037	48.672	0.04332					64	23	4	0	0	0	0.0047411	2	11002	11002;11051		93.166	65.537	1	865870			41312	6031	23892	23893	50331;50332	50331					-0.012391831196737257
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.8766784667969	3	421.876746	1262.60841	0.26699	0.00011264	-0.4421	-0.00018651	-0.17511	-7.3876E-05	422.21088401014083	48.224	0.73847	48.267	47.957	48.695	0.04332					74	27	4	0	0	0	0.34795	1	11033	11033		7.9454	0	1	1189400			41313	6031	23892	23893	50333	50333					-0.012391831196737257
RYKLYQEMF	9	Oxidation (M)	_RYKLYQEM(Oxidation (M))F_		RYKLYQEM(1)F		RYKLYQEM(100)F	0	0	1		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.31884765625	2	647.318448	1292.62234	0.24931	0.00016138	0.45139	0.0002922	0.70071	0.00045358	647.318815137335	41.061	0.72708	41.061	40.714	41.441	0					89	26	4	0	0	0	0.0032746	2	8831	8831;8881		100.09	76.07	1	2562200			41314	276	23893	23894	50334;50335	50334		18			-0.01226273682914325
RYKLYQEMF	9	Oxidation (M)	_RYKLYQEM(Oxidation (M))F_		RYKLYQEM(1)F		RYKLYQEM(94)F	0	0	1		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.3186645507812	2	647.318448	1292.62234	0.5296	0.00034282	0.15539	0.00010059	0.68499	0.00044341	647.318595489669	40.59	1.0113	40.682	40.42	41.431	0.09267					106	37	5	0	0	0	0.0040516	1	8631	8631		93.938	69.918	1	2942500			41315	276	23893	23894	50336	50336		18			-0.01226273682914325
RYKLYQEMF	9	Oxidation (M)	_RYKLYQEM(Oxidation (M))F_		RYKLYQEM(1)F		RYKLYQEM(94)F	0	0	1		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.3186645507812	2	647.318448	1292.62234	0.35281	0.00022838	0.36497	0.00023625	0.71778	0.00046463	647.3187558811893	40.569	0.97627	40.669	40.368	41.344	0.099407					96	35	5	0	0	0	0.0040516	1	8618	8618		93.938	63.302	1	3327700			41316	276	23893	23894	50337	50337		18			-0.01226273682914325
RYKNVSIQ	8	Unmodified	_RYKNVSIQ_					0	0	0			REV__ENSG00000171564|ENST00000302068|FGB	REV__ENSG00000171564|ENST00000302068|FGB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.29779052734375	2	504.285266	1006.55598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.621	1	17.503	17.003	18.003	-0.11739								0	0	0	0.35663	1	1687	1687		11.64	0.81637	1		+		41317	17651	23894	23895	50338	50338					0.0529627853737793
RYKQFSQIL	9	Unmodified	_RYKQFSQIL_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8352661132812	2	591.835123	1181.65569	0.28414	0.00016816	0.34439	0.00020382	0.62853	0.00037199	591.8351078651842	41.463	0.39557	41.553	41.243	41.639	0.090252					20	14	2	0	0	0	0.13748	1	8952	8952		32.786	13.529	1	1122200			41318	2568	23895	23896	50339	50339					0.07213096151326681
RYKQFSQIL	9	Unmodified	_RYKQFSQIL_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.3073120117188	2	591.835123	1181.65569	0.44425	0.00026293	-0.03059	-1.8104E-05	0.41367	0.00024482	591.8349421639732	41.406	0.39233	41.503	41.208	41.6	0.096626					20	14	2	0	0	0	0.20167	1	8891	8891		29.082	18.258	1	725390			41319	2568	23895	23896	50340	50340					0.07213096151326681
RYKTTQLLF	9	Unmodified	_RYKTTQLLF_					0	0	0		nc|ENSG00000014123|O94874-3|UFL1;nc|ENSG00000014123|O94874-2|UFL1;ENSG00000014123|ENST00000369278|UFL1	nc|ENSG00000014123|O94874-3|UFL1	nc|ENSG00000014123|O94874-3|UFL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.3378295898438	2	585.337498	1168.66044	0.37562	0.00021986	-0.86155	-0.0005043	-0.48593	-0.00028444	585.3374851087877	43.46	0.60178	43.537	43.263	43.865	0.077515					48	21	3	0	0	0	0.11201	1	9557	9557		36.506	4.3892	1	513580			41320	471	23896	23897	50341	50341					0.08285980294067485
RYKTTQLLF	9	Unmodified	_RYKTTQLLF_					0	0	0		nc|ENSG00000014123|O94874-3|UFL1;nc|ENSG00000014123|O94874-2|UFL1;ENSG00000014123|ENST00000369278|UFL1	nc|ENSG00000014123|O94874-3|UFL1	nc|ENSG00000014123|O94874-3|UFL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8388061523438	2	585.337498	1168.66044	0.4289	0.00025105	-0.99489	-0.00058234	-0.56599	-0.00033129	585.3376504237887	43.411	0.64824	43.495	43.268	43.917	0.083992					47	23	3	0	0	0	0.11201	1	9534	9534		36.506	2.4038	1	360020			41321	471	23896	23897	50342	50342					0.08285980294067485
RYKTTQLLF	9	Unmodified	_RYKTTQLLF_					0	0	0		nc|ENSG00000014123|O94874-3|UFL1;nc|ENSG00000014123|O94874-2|UFL1;ENSG00000014123|ENST00000369278|UFL1	nc|ENSG00000014123|O94874-3|UFL1	nc|ENSG00000014123|O94874-3|UFL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	585.337498	1168.66044	0.2781	0.00016278	-0.72545	-0.00042464	-0.44735	-0.00026185	585.3376158369936	43.756	0.62434	43.756	43.519	44.143	0	0.15959	0.00017517	NaN	36.506	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384580			41322	471	23896	23897							0.08285980294067485
RYKVFVDLF	9	Unmodified	_RYKVFVDLF_					0	0	0		ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8213500976562	2	593.834591	1185.65463	0.52132	0.00030958	-0.27395	-0.00016268	0.24738	0.0001469	593.8344000883305	63.471	0.65892	63.471	63.168	63.826	0					50	23	3	0	0	0	0.15943	1	15676	15676		39.95	20.693	1	714620			41323	4985	23897	23898	50343	50343					0.06922881782406876
RYKVFVDLF	9	Unmodified	_RYKVFVDLF_					0	0	0		ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8346557617188	2	593.834591	1185.65463	0.55546	0.00032985	-0.47111	-0.00027976	0.084349	5.0089E-05	593.834241869576	63.301	0.7282	63.397	63.148	63.876	0.095722					52	25	3	0	0	0	0.15943	1	15659	15659		39.95	17.213	1	680330			41324	4985	23897	23898	50344	50344					0.06922881782406876
RYKVFVDLF	9	Unmodified	_RYKVFVDLF_					0	0	0		ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8345336914062	2	593.834591	1185.65463	0.54634	0.00032444	-0.38706	-0.00022985	0.15928	9.4587E-05	593.8342984092538	63.487	0.74886	63.479	63.242	63.99	-0.0085564					52	26	3	0	0	0	0.16283	1	15781	15781		29.082	5.061	1	878410			41325	4985	23897	23898	50345	50345					0.06922881782406876
RYLADLPTL	9	Unmodified	_RYLADLPTL_					0	0	0		nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.303466796875	2	531.303124	1060.5917	0.55374	0.0002942	-0.48527	-0.00025782	0.068469	3.6378E-05	531.3030189632074	62.38	1.2036	62.38	61.836	63.039	0					99	44	4	0	0	0	0.026579	3	15360	15360;15408;15458		61.602	19.762	1	3102600			41326	3497	23898	23899	50346;50347;50348	50346					0.06382315994369492
RYLADLPTL	9	Unmodified	_RYLADLPTL_					0	0	0		nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3035278320312	2	531.303124	1060.5917	0.37068	0.00019694	-0.2652	-0.0001409	0.10547	5.6037E-05	531.3031371463795	62.272	1.2265	62.369	61.841	63.068	0.096985					107	44	4	0	0	0	0.0073901	3	15315	15315;15366;15461		83.429	30.025	1	3381400			41327	3497	23898	23899	50349;50350;50351	50349					0.06382315994369492
RYLADLPTL	9	Unmodified	_RYLADLPTL_					0	0	0		nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3035278320312	2	531.303124	1060.5917	0.52308	0.00027792	-0.32399	-0.00017213	0.1991	0.00010578	531.3030629906635	62.323	1.2055	62.315	61.846	63.051	-0.0085526					102	44	3	0	0	0	0.0054984	3	15340	15340;15387;15436		86.332	36.778	1	3271500			41328	3497	23898	23899	50352;50353;50354	50352					0.06382315994369492
RYLDASNEL	9	Unmodified	_RYLDASNEL_					0	0	0		nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4	nc|ENSG00000114904|P51957-3|NEK4	nc|ENSG00000114904|P51957-3|NEK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3145751953125	2	540.769645	1079.52474	0.57219	0.00030942	0.2482	0.00013422	0.82038	0.00044364	540.7700237345026	40.606	0.40665	40.706	40.453	40.86	0.099407					25	14	3	0	0	0	0.25049	1	8648	8648		13.615	1.3742	1	264060			41329	2593	23899	23900	50355	50355					-0.011843392873743142
RYLDEINLL	9	Unmodified	_RYLDEINLL_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.8192749023438	2	574.819138	1147.62372	0.18912	0.00010871	0.06329	3.638E-05	0.25241	0.00014509	574.8191245397314	67.089	1.3091	67.089	66.688	67.997	0					117	45	5	0	0	0	0.0028032	4	16821	16777;16821;16865;16911		103.82	31.901	1	5995200			41330	747	23900	23901	50356;50357;50358;50359	50357					0.055816836775193224
RYLDEINLL	9	Unmodified	_RYLDEINLL_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.8192138671875	2	574.819138	1147.62372	0.30813	0.00017712	-0.16314	-9.3778E-05	0.14499	8.334E-05	574.819034753534	66.981	1.5143	67.065	66.738	68.252	0.083832					118	53	4	0	0	0	0.0028032	3	16793	16746;16793;16840		103.82	36.302	1	6469500			41331	747	23900	23901	50360;50361;50362	50361					0.055816836775193224
RYLDEINLL	9	Unmodified	_RYLDEINLL_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.8193359375	2	574.819138	1147.62372	0.057627	3.3125E-05	0.1657	9.5247E-05	0.22333	0.00012837	574.819189572124	67.115	1.5128	67.099	66.687	68.2	-0.016296					116	53	5	0	0	0	0.001957	4	16825	16778;16825;16871;16964		110.55	32.403	1	6322600			41332	747	23900	23901	50363;50364;50365;50366	50364					0.055816836775193224
RYLDELMKL	9	Oxidation (M)	_RYLDELM(Oxidation (M))KL_		RYLDELM(1)KL		RYLDELM(82)KL	0	0	1		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.8211059570312	2	598.820824	1195.62709	0.58637	0.00035113	-0.39133	-0.00023433	0.19505	0.0001168	598.820593054189	50.177	0.89292	50.177	49.793	50.686	0					89	32	4	0	0	0	0.0083763	3	11620	11571;11620;11674		81.915	31.982	1	2072800			41333	4321	23901	23902	50367;50368;50369	50368		551			0.037106104598706224
RYLDELMKL	9	Oxidation (M)	_RYLDELM(Oxidation (M))KL_		RYLDELM(1)KL		RYLDELM(73)KL	0	0	1		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.8211059570312	2	598.820824	1195.62709	0.84387	0.00050532	-0.54165	-0.00032435	0.30221	0.00018097	598.8204308765453	50.136	1.0466	50.157	49.825	50.872	0.020691					102	38	4	0	0	0	0.014058	3	11607	11560;11607;11657		73.196	23.263	1	1738100			41334	4321	23901	23902	50370;50371;50372	50371		551			0.037106104598706224
RYLDELMKL	9	Oxidation (M)	_RYLDELM(Oxidation (M))KL_					0	0	1		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	598.820824	1195.62709	0.915	0.00054792	-0.68372	-0.00040943	0.23128	0.00013849	598.8204196669935	50.119	0.9141	50.163	49.825	50.739	0.044891	-0.0022673	-0.00016718	NaN	81.915	96	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1965700			41335	4321	23901	23902				551			0.037106104598706224
RYLDKTEQW	9	Unmodified	_RYLDKTEQW_					0	0	0		CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.5431213378906	3	413.543655	1237.60914	-1.297	-0.00053638	0.2	8.2707E-05	-1.097	-0.00045368	413.54370967410193	34.959	0.964	34.959	34.556	35.52	0					98	34	4	0	0	0	0.0041134	2	6981	6930;6981		93.448	76.882	1	1972800		+	41336	8441;207	23902	23903	50373;50374	50374					-0.00016388470635320118
RYLDKTEQW	9	Unmodified	_RYLDKTEQW_					0	0	0		CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8115234375	2	619.811845	1237.60914	-1.0427	-0.00064627	0.11291	6.9984E-05	-0.92977	-0.00057628	619.8118435676802	34.983	0.66081	34.983	34.751	35.412	0					55	23	3	0	0	0	0.0041134	2	6988	6938;6988		100.71	64.202	1	1011300		+	41337	8441;207	23902	23903	50375;50376	50376					-0.00016388470635320118
RYLDKTEQW	9	Unmodified	_RYLDKTEQW_					0	0	0		CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8118286132812	2	619.811845	1237.60914	0.25816	0.00016001	0.021157	1.3114E-05	0.27931	0.00017312	619.811793591113	40.783	0.62608	40.783	40.526	41.152	0					45	22	3	0	0	0	0.32538	1	8801	8801		7.609	3.0801	1	461430		+	41338	8441;207	23902	23903	50377	50377					-0.00016388470635320118
RYLDKTEQW	9	Unmodified	_RYLDKTEQW_					0	0	0		CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5431213378906	3	413.543655	1237.60914	-1.0321	-0.00042684	-0.011759	-4.8629E-06	-1.0439	-0.0004317	413.5436296514716	34.934	0.90475	35.01	34.604	35.509	0.075306					105	32	4	0	0	0	0.0090407	2	6950	6904;6950		80.896	65.938	1	1653900		+	41339	8441;207	23902	23903	50378;50379	50379					-0.00016388470635320118
RYLDKTEQW	9	Unmodified	_RYLDKTEQW_					0	0	0		CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8110961914062	2	619.811845	1237.60914	-1.2179	-0.00075484	0.24537	0.00015208	-0.97248	-0.00060276	619.8118056493937	34.9	0.74442	34.976	34.685	35.429	0.075306					66	26	4	0	0	0	0.0065372	2	6968	6919;6968		100.71	70.868	1	1028300		+	41340	8441;207	23902	23903	50380;50381	50381					-0.00016388470635320118
RYLDKTEQW	9	Unmodified	_RYLDKTEQW_					0	0	0		CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5430908203125	3	413.543655	1237.60914	-0.75966	-0.00031415	-0.12212	-5.0501E-05	-0.88177	-0.00036465	413.5435922638509	34.897	1.1307	34.975	34.336	35.467	0.077377					107	40	4	0	0	0	0.016948	2	6930	6882;6930		68.76	50.039	1	1663600		+	41341	8441;207	23902	23903	50382;50383	50383					-0.00016388470635320118
RYLDKTEQW	9	Unmodified	_RYLDKTEQW_					0	0	0		CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8110961914062	2	619.811845	1237.60914	-0.79014	-0.00048974	-0.02167	-1.3432E-05	-0.81181	-0.00050317	619.8116696221759	34.884	0.65915	34.961	34.704	35.363	0.077377					54	23	3	0	0	0	0.014453	3	6901	6901;6951;7004		81.915	61.501	1	725420		+	41342	8441;207	23902	23903	50384;50385;50386	50384					-0.00016388470635320118
RYLDKTEQW	9	Unmodified	_RYLDKTEQW_					0	0	0		CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	619.811845	1237.60914	0.31385	0.00019453	-0.10154	-6.2936E-05	0.21231	0.00013159	619.8117268574375	40.388	0.48893	40.481	40.284	40.773	0.092674	-0.094849	-0.00010951	NaN	7.609	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402920		+	41343	8441;207	23902	23903							-0.00016388470635320118
RYLDKTEQW	9	Unmodified	_RYLDKTEQW_					0	0	0		CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	619.811845	1237.60914	0.34743	0.00021534	0.057617	3.5712E-05	0.40505	0.00025105	619.8118683399065	40.363	0.59997	40.463	40.26	40.86	0.099403	-0.11263	8.7786E-05	NaN	7.609	38	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454560		+	41344	8441;207	23902	23903							-0.00016388470635320118
RYLDLFTNF	9	Unmodified	_RYLDLFTNF_					0	0	0		ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8064575195312	2	594.806031	1187.59751	0.17421	0.00010362	0.3133	0.00018635	0.48751	0.00028997	594.8062496403024	75.847	0.68584	75.847	75.534	76.22	0					76	24	4	0	0	0	0.0027197	1	19522	19522		104.48	104.48	1	1571400			41345	1543	23903	23904	50387	50387					0.011214145060421288
RYLDLFTNF	9	Unmodified	_RYLDLFTNF_					0	0	0		ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8062744140625	2	594.806031	1187.59751	0.4184	0.00024887	0.0038822	2.3092E-06	0.42228	0.00025118	594.8060576455678	75.801	0.68037	75.854	75.509	76.189	0.053413					68	24	4	0	0	0	0.0031966	1	19493	19493		100.71	74.441	1	2092700			41346	1543	23903	23904	50388	50388					0.011214145060421288
RYLDLFTNF	9	Unmodified	_RYLDLFTNF_					0	0	0		ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	ENSG00000100196|ENST00000216014|KDELR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.80615234375	2	594.806031	1187.59751	0.39489	0.00023489	0.026703	1.5883E-05	0.4216	0.00025077	594.8061087948807	75.911	0.63728	75.88	75.525	76.163	-0.031487					70	22	4	0	0	0	0.00082904	1	19503	19503		124.95	92.648	1	2255700			41347	1543	23903	23904	50389	50389					0.011214145060421288
RYLDLFTNY	9	Unmodified	_RYLDLFTNY_					0	0	0		ENST00000599084.1_1_19:48892794-48894615:-|nuORF;ENSG00000105438|ENST00000330720|KDELR1;ENST00000594643.1_1_19:48893647-48894615:-|nuORF	ENST00000599084.1_1_19:48892794-48894615:-|nuORF	ENST00000599084.1_1_19:48892794-48894615:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.2896728515625	2	602.803488	1203.59242	0.44528	0.00026842	-2.4741	-0.0014914	-2.0288	-0.001223	602.8031236420736	67.096	0.59994	67.096	66.825	67.425	0					38	20	3	0	0	0	0.17263	1	16879	16879		38.615	4.213	1	261800			41348	1980	23904	23905	50390	50390					-0.001228893565667022
RYLDLFTNY	9	Unmodified	_RYLDLFTNY_					0	0	0		ENST00000599084.1_1_19:48892794-48894615:-|nuORF;ENSG00000105438|ENST00000330720|KDELR1;ENST00000594643.1_1_19:48893647-48894615:-|nuORF	ENST00000599084.1_1_19:48892794-48894615:-|nuORF	ENST00000599084.1_1_19:48892794-48894615:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8041381835938	2	602.803488	1203.59242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.029	1	67.113	66.613	67.613	0.083832								0	0	0	0.12412	1	16801	16801		40.725	10.088	1				41349	1980	23904	23905	50391	50391					-0.001228893565667022
RYLDLFTSF	9	Unmodified	_RYLDLFTSF_					0	0	0		ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3005981445312	2	581.300581	1160.58661	0.41431	0.00024084	-0.22882	-0.00013301	0.1855	0.00010783	581.300399817127	76.926	2.0771	76.926	76.338	78.415	0					192	76	5	0	0	0	0.0010968	6	19837	19787;19837;19886;19931;19993;20048		121.53	56.299	1	5802100			41350	3958	23905	23906	50392;50393;50394;50395;50396;50397	50393					0.012740121317619924
RYLDLFTSF	9	Unmodified	_RYLDLFTSF_					0	0	0		ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.300537109375	2	581.300581	1160.58661	0.31719	0.00018438	-0.15761	-9.1617E-05	0.15958	9.2766E-05	581.3004961903129	76.879	2.8328	76.934	76.322	79.154	0.055168					222	105	5	0	0	0	0.00019464	6	19813	19765;19813;19863;19907;19976;20040		133.05	71.696	1	6266100			41351	3958	23905	23906	50398;50399;50400;50401;50402;50403	50399					0.012740121317619924
RYLDLFTSF	9	Unmodified	_RYLDLFTSF_					0	0	0		ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF	ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.3006591796875	2	581.300581	1160.58661	0.58983	0.00034287	-0.36737	-0.00021355	0.22246	0.00012932	581.3003477970676	76.965	2.5865	76.933	76.346	78.932	-0.031334					221	96	5	0	0	0	0.001957	7	19819	19776;19819;19861;19915;19999;20066;20176		110.55	56.72	1	7275000			41352	3958	23905	23906	50404;50405;50406;50407;50408;50409;50410	50405					0.012740121317619924
RYLDNNTLSF	10	Unmodified	_RYLDNNTLSF_					0	0	0			REV__ENST00000548022.1_1_12:42717790-42719777:-|nuORF	REV__ENST00000548022.1_1_12:42717790-42719777:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.8091430664062	2	621.809302	1241.60405	-0.17511	-0.00010888	0.40302	0.0002506	0.22792	0.00014172	621.8094264985131	31.163	0.54684	31.206	30.968	31.515	0.042364					48	19	3	0	0	0	0.34483	1	5779	5779		13.615	2.8154	1	375010	+		41353	15969	23906	23907	50411	50411					-0.007086923332508377
RYLDNNTLSF	10	Unmodified	_RYLDNNTLSF_					0	0	0			REV__ENST00000548022.1_1_12:42717790-42719777:-|nuORF	REV__ENST00000548022.1_1_12:42717790-42719777:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.8092651367188	2	621.809302	1241.60405	0.11413	7.0966E-05	0.31029	0.00019294	0.42441	0.0002639	621.80937765806	31.038	0.59629	31.066	30.836	31.433	0.027157					47	21	3	0	0	0	0.31681	2	5764	5725;5764		18.373	8.8291	1	503500	+		41354	15969	23906	23907	50412;50413	50413					-0.007086923332508377
RYLDNNTLSF	10	Unmodified	_RYLDNNTLSF_					0	0	0			REV__ENST00000548022.1_1_12:42717790-42719777:-|nuORF	REV__ENST00000548022.1_1_12:42717790-42719777:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	621.809302	1241.60405	0.13826	8.5971E-05	0.15758	9.7987E-05	0.29584	0.00018396	621.8093730407219	31.145	0.63958	31.145	30.862	31.502	0	0.0060068	-0.00017243	NaN	18.373	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316360	+		41355	15969	23906	23907							-0.007086923332508377
RYLDNNTLSF	10	Unmodified	_RYLDNNTLSF_					0	0	0			REV__ENST00000548022.1_1_12:42717790-42719777:-|nuORF	REV__ENST00000548022.1_1_12:42717790-42719777:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	621.809302	1241.60405	-0.17511	-0.00010888	0.40302	0.0002506	0.22792	0.00014172	621.8094264985131	31.163	0.54684	31.206	30.968	31.515	0.042364	0.066964	0.0001328	NaN	18.373	48	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375010	+		41356	15969	23906	23907							-0.007086923332508377
RYLDNNTLSF	10	Unmodified	_RYLDNNTLSF_					0	0	0			REV__ENST00000548022.1_1_12:42717790-42719777:-|nuORF	REV__ENST00000548022.1_1_12:42717790-42719777:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	621.809302	1241.60405	0.11413	7.0966E-05	0.31029	0.00019294	0.42441	0.0002639	621.80937765806	31.038	0.59629	31.066	30.836	31.433	0.027157	-0.072971	1.7474E-05	NaN	18.373	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	503500	+		41357	15969	23906	23907							-0.007086923332508377
RYLEAALRL	9	Unmodified	_RYLEAALRL_					0	0	0		ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8314208984375	2	552.82984	1103.64513	0.47403	0.00026206	1.2732	0.00070385	1.7472	0.00096591	552.8310482999312	48.652	0.96457	48.652	48.386	49.351	0					78	34	4	0	0	0	0.003673	2	11168	11119;11168		96.936	44.667	1	4539900			41358	4405	23907	23908	50414;50415	50415					0.09745113496887825
RYLEAALRL	9	Unmodified	_RYLEAALRL_					0	0	0		ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.8311767578125	2	552.82984	1103.64513	0.61846	0.0003419	0.94029	0.00051982	1.5587	0.00086172	552.8300460540646	48.68	0.83286	48.725	48.156	48.989	0.044888					69	30	4	0	0	0	0.0008224	3	11136	11119;11136;11184		125.04	56.957	1	4606200			41359	4405	23907	23908	50416;50417;50418	50417					0.09745113496887825
RYLEAALRL	9	Unmodified	_RYLEAALRL_					0	0	0		ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	ENSG00000141696|ENST00000393928|P3H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.8314819335938	2	552.82984	1103.64513	0.37308	0.00020625	0.046988	2.5976E-05	0.42007	0.00023223	552.829943361438	48.601	1.2687	48.633	48.359	49.628	0.032043					123	45	4	0	0	0	0.0023895	4	11138	11088;11138;11184;11207		107.1	53.267	1	4354300			41360	4405	23907	23908	50419;50420;50421;50422	50420					0.09745113496887825
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(170)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8131103515625	2	597.812999	1193.61144	0.57381	0.00034303	-0.20949	-0.00012523	0.36433	0.0002178	597.8129087086123	31.953	2.1178	31.953	31.636	33.753	0					234	75	5	0	0	0	2.2231E-07	6	6071	5979;6022;6071;6120;6164;6217		171.46	102.36	1	17603000			41361	6287	23908	23909	50423;50424;50425;50426;50427;50428	50425		742			0.022383239428108936
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(170)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8134155273438	2	597.812999	1193.61144	0.6514	0.00038942	-0.30605	-0.00018296	0.34535	0.00020646	597.8128653449717	31.876	2.0522	31.918	31.6	33.652	0.042364					212	73	5	0	0	0	2.2231E-07	6	6046	5954;6003;6046;6090;6134;6184		171.46	102.36	1	22632000			41362	6287	23908	23909	50429;50430;50431;50432;50433;50434	50431		742			0.022383239428108936
RYLEKPMEI	9	Oxidation (M)	_RYLEKPM(Oxidation (M))EI_		RYLEKPM(1)EI		RYLEKPM(170)EI	0	0	1		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8132934570312	2	597.812999	1193.61144	0.42501	0.00025408	-0.071251	-4.2595E-05	0.35376	0.00021148	597.8129898895459	31.853	2.157	31.894	31.587	33.744	0.040991					220	77	5	0	0	0	2.2231E-07	7	6036	5946;5994;6036;6082;6126;6178;6226		171.46	102.36	1	20582000			41363	6287	23908	23909	50435;50436;50437;50438;50439;50440;50441	50437		742			0.022383239428108936
RYLEKSGVL	9	Unmodified	_RYLEKSGVL_					0	0	0		ENST00000495043.5_1_1:39330344-39338774:-|nuORF;ENSG00000214114|ENST00000397572|MYCBP	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.8082275390625	2	532.808574	1063.60259	0.43158	0.00022995	-0.62022	-0.00033046	-0.18864	-0.00010051	532.8082563167518	31.737	0.42885	31.737	31.553	31.982	0					24	14	2	0	0	0	0.10812	1	5970	5970		37.075	9.4458	1	475160			41364	8378	23909	23910	50442	50442					0.07333718368658992
RYLEKSGVL	9	Unmodified	_RYLEKSGVL_					0	0	0		ENST00000495043.5_1_1:39330344-39338774:-|nuORF;ENSG00000214114|ENST00000397572|MYCBP	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.8087768554688	2	532.808574	1063.60259	0.34685	0.0001848	-0.9446	-0.00050329	-0.59776	-0.00031849	532.8085027696744	31.657	0.42558	31.699	31.515	31.941	0.042364					21	14	2	0	0	0	0.10812	2	5956	5941;5956		37.075	10.296	1	564640			41365	8378	23909	23910	50443;50444	50444					0.07333718368658992
RYLEKSGVL	9	Unmodified	_RYLEKSGVL_					0	0	0		ENST00000495043.5_1_1:39330344-39338774:-|nuORF;ENSG00000214114|ENST00000397572|MYCBP	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	ENST00000495043.5_1_1:39330344-39338774:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8091430664062	2	532.808574	1063.60259	0.47845	0.00025492	-0.65346	-0.00034817	-0.17501	-9.3249E-05	532.8082970492536	31.697	0.43669	31.738	31.479	31.916	0.040989					22	15	2	0	0	0	0.086462	1	5953	5953		40.239	12.61	1	356450			41366	8378	23909	23910	50445	50445					0.07333718368658992
RYLELISSI	9	Unmodified	_RYLELISSI_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.31640625	2	547.316232	1092.61791	0.13818	7.5628E-05	0.60927	0.00033346	0.74745	0.00040909	547.3165736962056	65.157	0.63039	65.157	64.858	65.488	0					50	22	3	0	0	0	0.01909	2	16221	16221;16286		65.474	7.7517	1	1862500			41367	5756	23910	23911	50446;50447	50446					0.07530585165864068
RYLELISSI	9	Unmodified	_RYLELISSI_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.31640625	2	547.316232	1092.61791	0.29619	0.00016211	0.43604	0.00023865	0.73223	0.00040076	547.3164203740982	65.03	0.6153	65.118	64.844	65.46	0.088882					50	22	4	0	0	0	0.01909	1	16181	16181		65.474	7.7517	1	1827700			41368	5756	23910	23911	50448	50448					0.07530585165864068
RYLELISSI	9	Unmodified	_RYLELISSI_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.3164672851562	2	547.316232	1092.61791	0.19787	0.0001083	0.47206	0.00025837	0.66993	0.00036666	547.3165378044362	65.163	0.72596	65.152	64.86	65.586	-0.011337					60	26	3	0	0	0	0.011693	3	16213	16199;16213;16281		76.825	12.61	1	1875400			41369	5756	23910	23911	50449;50450;50451	50450					0.07530585165864068
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	nc|ENSG00000204525|P10321-2|HLA-C;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.824951171875	2	611.824952	1221.63535	-0.024207	-1.481E-05	0.053685	3.2846E-05	0.029478	1.8036E-05	611.8248648517666	28.246	0.97367	28.246	27.924	28.898	0					89	33	3	0	0	0	1.247E-08	5	4906	4857;4906;4951;5001;5051		164.85	91.883	1	2085000			41370	8234;8321;12917;8249	23911	23912	50452;50453;50454;50455;50456	50453					0.03339880700855247
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	nc|ENSG00000204525|P10321-2|HLA-C;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.57916259765625	3	408.21906	1221.63535	-0.38795	-0.00015837	0.47265	0.00019295	0.084706	3.4579E-05	408.2192058852064	28.219	1.6025	28.219	27.615	29.218	0					129	56	3	0	0	0	0.27783	1	4927	4927		32.616	19.744	1	3756700			41371	8234;8321;12917;8249	23911	23912	50457	50457					0.03339880700855247
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	nc|ENSG00000204525|P10321-2|HLA-C;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.8250732421875	2	611.824952	1221.63535	0.062818	3.8434E-05	0.06996	4.2803E-05	0.13278	8.1237E-05	611.8248820305306	28.251	0.92737	28.247	27.94	28.867	-0.0042572					79	32	3	0	0	0	1.5248E-08	4	4913	4864;4913;4963;5013		161.44	88.477	1	2071700			41372	8234;8321;12917;8249	23911	23912	50458;50459;50460;50461	50459					0.03339880700855247
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	nc|ENSG00000204525|P10321-2|HLA-C;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5791931152344	3	408.21906	1221.63535	-0.21055	-8.595E-05	0.40545	0.00016551	0.19491	7.9564E-05	408.2192256354093	28.255	1.3303	28.251	27.763	29.093	-0.0042572					108	46	3	0	0	0	0.24783	1	4929	4929		42.068	23.728	1	3906100			41373	8234;8321;12917;8249	23911	23912	50462	50462					0.03339880700855247
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	nc|ENSG00000204525|P10321-2|HLA-C;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.8248291015625	2	611.824952	1221.63535	-0.076316	-4.6692E-05	0.18664	0.00011419	0.11033	6.7501E-05	611.824938281091	28.228	1.0432	28.229	27.879	28.922	0.0004673					86	36	3	0	0	0	3.0436E-09	4	4897	4850;4897;4947;4999		176.41	103.44	1	2057000			41374	8234;8321;12917;8249	23911	23912	50463;50464;50465;50466	50464					0.03339880700855247
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	nc|ENSG00000204525|P10321-2|HLA-C;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5791320800781	3	408.21906	1221.63535	-0.30937	-0.00012629	0.53149	0.00021696	0.22212	9.0674E-05	408.2192546751021	28.205	1.552	28.205	27.764	29.316	0.0004673					116	55	3	0	0	0	0.25783	1	4920	4920		38.559	18.933	1	3585100			41375	8234;8321;12917;8249	23911	23912	50467	50467					0.03339880700855247
RYLENQTFRF	10	Unmodified	_RYLENQTFRF_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.5703125	3	458.570204	1372.68878	0.33829	0.00015513	0.13823	6.3387E-05	0.47652	0.00021852	458.5700401682895	47.821	0.68805	47.821	47.468	48.156	0					48	24	3	0	0	0	0.032797	1	10856	10856		62.78	53.536	1	1138500			41376	889	23912	23913	50468	50468					0.0173467820334281
RYLENQTFRF	10	Unmodified	_RYLENQTFRF_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.57049560546875	3	458.570204	1372.68878	0.38356	0.00017589	-0.15592	-7.1501E-05	0.22764	0.00010439	458.570115104791	47.702	0.49322	47.75	47.4	47.893	0.04752					50	17	4	0	0	0	0.049253	2	10828	10828;10881		59.177	49.933	1	1266100			41377	889	23912	23913	50469;50470	50469					0.0173467820334281
RYLENQTFRF	10	Unmodified	_RYLENQTFRF_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.57025146484375	3	458.570204	1372.68878	0.44529	0.0002042	-0.22334	-0.00010242	0.22195	0.00010178	458.56996936475576	47.704	0.71492	47.747	47.43	48.145	0.04332					55	26	4	0	0	0	0.024749	1	10819	10819		66.55	57.306	1	1581200			41378	889	23912	23913	50471	50471					0.0173467820334281
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3304443359375	2	600.330205	1198.64586	0.35885	0.00021543	0.11611	6.9705E-05	0.47496	0.00028513	600.3303267086254	41.416	1.127	41.416	41.039	42.166	0					117	45	5	0	0	0	4.1496E-11	4	8908	8869;8908;8957;9008		189.73	104.09	1	14196000			41379	6287	23913	23914	50472;50473;50474;50475	50473					0.05447908145947622
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3317260742188	2	600.330205	1198.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.829	1	41.829	41.329	42.329	0								0	0	0	0.0072668	1	9051	9051		84.522	50.12	1				41380	6287	23913	23914	50476	50476					0.05447908145947622
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3305053710938	2	600.330205	1198.64586	0.48362	0.00029033	0.085067	5.1069E-05	0.56868	0.0003414	600.3302887836242	41.008	0.84287	41.099	40.796	41.639	0.090252					120	31	6	0	0	0	2.0102E-16	4	8799	8754;8799;8849;8900		203.64	127.88	1	15302000			41381	6287	23913	23914	50477;50478;50479;50480	50478					0.05447908145947622
RYLETILEI	9	Unmodified	_RYLETILEI_					0	0	0		ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3286743164062	2	575.329339	1148.64412	0.12978	7.4668E-05	-0.058685	-3.3763E-05	0.071097	4.0904E-05	575.3292698081923	69.215	1.2067	69.215	68.924	70.131	0					110	43	4	0	0	0	0.013404	2	17445	17445;17489		74.2	28.5	1	2851500			41382	8585	23914	23915	50481;50482	50481					0.07574854337326542
RYLETILEI	9	Unmodified	_RYLETILEI_					0	0	0		ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3292846679688	2	575.329339	1148.64412	0.35504	0.00020427	-0.31991	-0.00018405	0.035135	2.0214E-05	575.3291228061669	69.154	1.3692	69.226	68.993	70.363	0.071938					122	48	4	0	0	0	0.0045319	2	17473	17428;17473		90.135	26.174	1	2779700			41383	8585	23914	23915	50483;50484	50484					0.07574854337326542
RYLETILEI	9	Unmodified	_RYLETILEI_					0	0	0		ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3290405273438	2	575.329339	1148.64412	0.16685	9.5991E-05	-0.15994	-9.2016E-05	0.0069087	3.9748E-06	575.3291865308474	69.275	1.4394	69.253	68.892	70.332	-0.022087					111	51	4	0	0	0	0.013404	3	17448	17437;17448;17494		74.2	28.5	1	2477700			41384	8585	23914	23915	50485;50486;50487	50486					0.07574854337326542
RYLGKVLEL	9	Unmodified	_RYLGKVLEL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.834716796875	2	545.834591	1089.65463	0.68706	0.00037502	0.13002	7.0968E-05	0.81708	0.00044599	545.8346045857605	46.844	0.92726	46.844	46.566	47.493	0					74	32	4	0	0	0	0.053988	1	10595	10595		51.415	3.6665	1	2293900			41385	3625	23915	23916	50488	50488					0.11338881782398857
RYLGKVLEL	9	Unmodified	_RYLGKVLEL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8347778320312	2	545.834591	1089.65463	0.74449	0.00040637	-0.040072	-2.1873E-05	0.70442	0.0003845	545.834563419164	46.662	0.91272	46.714	46.467	47.379	0.052574					72	32	3	0	0	0	0.014206	2	10538	10538;10589		72.968	31.012	1	2116900			41386	3625	23915	23916	50489;50490	50489					0.11338881782398857
RYLGKVLEL	9	Unmodified	_RYLGKVLEL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8350219726562	2	545.834591	1089.65463	0.76288	0.0004164	0.099386	5.4248E-05	0.86226	0.00047065	545.8346265710861	46.746	0.84377	46.8	46.516	47.36	0.054371					71	28	3	0	0	0	0.0098873	2	10554	10554;10613		79.596	37.641	1	2179100			41387	3625	23915	23916	50491;50492	50491					0.11338881782398857
RYLGKVLEL	9	Unmodified	_RYLGKVLEL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	545.834591	1089.65463	0.68706	0.00037502	0.13002	7.0968E-05	0.81708	0.00044599	545.8346045857605	46.844	0.92726	46.844	46.566	47.493	0	0.058074	6.8937E-05	NaN	79.596	74	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2293900			41388	3625	23915	23916							0.11338881782398857
RYLHSHHFL	9	Unmodified	_RYLHSHHFL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.88067626953125	3	403.880713	1208.62031	-0.22194	-8.9636E-05	0.25122	0.00010146	0.029281	1.1826E-05	403.8808398004155	26.346	1.0513	26.346	25.846	26.897	0					61	36	3	0	0	0	0.079752	1	4320	4320		32.037	10.447	1	191890			41389	12810	23916	23917	50493	50493					0.024344784141703713
RYLHSHHFL	9	Unmodified	_RYLHSHHFL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2394714355469	3	403.880713	1208.62031	0.014868	6.0051E-06	0.73598	0.00029725	0.75085	0.00030325	403.880890685708	26.518	0.9096	26.496	26.266	27.176	-0.022236					62	31	3	0	0	0	0.25526	1	4357	4357		4.897	1.9018	1	203700			41390	12810	23916	23917	50494	50494					0.024344784141703713
RYLHSHHFL	9	Unmodified	_RYLHSHHFL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	403.880713	1208.62031	-0.27485	-0.00011101	-1.3043	-0.00052679	-1.5792	-0.00063779	403.8808256220585	26.411	1.1012	26.372	26.069	27.17	-0.038671	-0.032757	-0.0021679	NaN	32.037	72	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169800			41391	12810	23916	23917							0.024344784141703713
RYLISYGEF	9	Unmodified	_RYLISYGEF_					0	0	0		ENSG00000189050|ENST00000305783|RNFT1;ENST00000486103.6_1_17:58031378-58035783:-|nuORF	ENSG00000189050|ENST00000305783|RNFT1	ENSG00000189050|ENST00000305783|RNFT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2684326171875	2	574.292756	1146.57096	0.22628	0.00012995	-0.40868	-0.0002347	-0.1824	-0.00010475	574.2922492022957	61.087	0.44506	61.184	61.01	61.455	0.096985					27	16	2	0	0	0	0.20381	1	14989	14989		29.841	15.935	1	869420			41392	7796	23917	23918	50495	50495					0.003537256147183143
RYLLFARQF	9	Unmodified	_RYLLFARQF_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.5672302246094	3	405.232864	1212.67676	0.23815	9.6507E-05	-1.5425	-0.00062505	-1.3043	-0.00052855	405.23255950293407	54.567	0.83804	54.567	54.105	54.943	0					78	30	4	0	0	0	0.059067	1	12972	12972		49.527	32.961	1	902720			41393	1056	23918	23919	50496	50496					0.07893106250821802
RYLLFARQF	9	Unmodified	_RYLLFARQF_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.23272705078125	3	405.232864	1212.67676	0.16064	6.5097E-05	-1.2161	-0.00049279	-1.0554	-0.0004277	405.23266196879365	54.465	0.74683	54.528	54.168	54.915	0.063202					78	27	4	0	0	0	0.053988	1	12933	12933		51.415	41.871	1	1112400			41394	1056	23918	23919	50497	50497					0.07893106250821802
RYLLFARQF	9	Unmodified	_RYLLFARQF_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2327880859375	3	405.232864	1212.67676	0.28304	0.0001147	-0.90243	-0.0003657	-0.6194	-0.000251	405.23261144326864	54.839	0.8028	54.823	54.55	55.352	-0.015923					55	29	3	0	0	0	0.073988	1	13051	13051		43.982	30.367	1	1246000			41395	1056	23918	23919	50498	50498					0.07893106250821802
RYLLFARQF	9	Unmodified	_RYLLFARQF_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2417297363281	3	405.232864	1212.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.257	1	55.238	54.738	55.738	-0.019081								0	0	0	0.20287	1	13176	13176		21.59	3.2171	1				41396	1056	23918	23919	50499	50499					0.07893106250821802
RYLLTQELL	9	Unmodified	_RYLLTQELL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.8367919921875	2	574.837331	1147.66011	0.26826	0.00015421	-0.1418	-8.1514E-05	0.12646	7.2692E-05	574.8370389290521	63.267	0.68282	63.267	63.039	63.722	0					51	24	3	0	0	0	0.018042	1	15647	15647		67.081	11.578	1	729840			41397	1828	23919	23920	50500	50500					0.09218560574208823
RYLLTQELL	9	Unmodified	_RYLLTQELL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.8370361328125	2	574.837331	1147.66011	0.4267	0.00024528	-0.5026	-0.00028891	-0.0759	-4.363E-05	574.8368744045616	63.153	0.66544	63.248	63.016	63.681	0.095722					50	23	3	0	0	0	0.038291	1	15603	15603		57.249	1.7464	1	904790			41398	1828	23919	23920	50501	50501					0.09218560574208823
RYLLTQELL	9	Unmodified	_RYLLTQELL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.8372192382812	2	574.837331	1147.66011	0.3046	0.0001751	-0.14318	-8.2307E-05	0.16142	9.2791E-05	574.8370061797687	63.272	0.63937	63.264	63.051	63.691	-0.0085526					52	22	3	0	0	0	0.063898	1	15694	15694		47.732	0.13759	1	748040			41399	1828	23919	23920	50502	50502					0.09218560574208823
RYLMDPDTF	9	Oxidation (M)	_RYLM(Oxidation (M))DPDTF_		RYLM(1)DPDTF		RYLM(46)DPDTF	0	0	1		nc|ENSG00000179750|Q9UH17-3|APOBEC3B;ENSG00000179750|ENST00000333467|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.2657470703125	2	587.265881	1172.51721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.589	1	45.589	45.089	46.089	0								0	0	0	0.1027	1	10202	10202		45.7	23.953	1				41400	7142	23920	23921	50503	50503		797			-0.06214814879331243
RYLMLEERR	9	Unmodified	_RYLMLEERR_					0	0	0			REV__nc|ENSG00000184949|F5H4B4-2|FAM227A	REV__nc|ENSG00000184949|F5H4B4-2|FAM227A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3423461914062	2	633.342789	1264.67103	0.60734	0.00038465	-0.44861	-0.00028412	0.15873	0.00010053	633.3424123337908	47.923	0.61523	47.923	47.682	48.298	0					54	21	3	0	0	0	0.33321	1	11025	11025		3.2813	0.54611	1	3514700	+		41401	18343	23921	23922	50504	50504					0.04927639676839135
RYLMLEERR	9	Unmodified	_RYLMLEERR_					0	0	0			REV__nc|ENSG00000184949|F5H4B4-2|FAM227A	REV__nc|ENSG00000184949|F5H4B4-2|FAM227A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3436279296875	2	633.342789	1264.67103	0.78419	0.00049666	-0.34521	-0.00021864	0.43898	0.00027802	633.3425107108234	47.906	0.69502	47.954	47.695	48.39	0.047523					62	25	3	0	0	0	0.33515	1	10965	10965		5.7319	4.0792	1	3164200	+		41402	18343	23921	23922	50505	50505					0.04927639676839135
RYLMLEERR	9	Unmodified	_RYLMLEERR_					0	0	0			REV__nc|ENSG00000184949|F5H4B4-2|FAM227A	REV__nc|ENSG00000184949|F5H4B4-2|FAM227A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3423461914062	2	633.342789	1264.67103	0.69266	0.00043869	-0.63815	-0.00040417	0.054513	3.4525E-05	633.3423948867461	47.826	0.65659	47.869	47.637	48.294	0.04332					55	24	3	0	0	0	0.31772	1	10946	10946		5.7319	2.7366	1	3047000	+		41403	18343	23921	23922	50506	50506					0.04927639676839135
RYLMLEERR	9	Unmodified	_RYLMLEERR_					0	0	0			REV__nc|ENSG00000184949|F5H4B4-2|FAM227A	REV__nc|ENSG00000184949|F5H4B4-2|FAM227A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	633.342789	1264.67103	0.78419	0.00049666	-0.34521	-0.00021864	0.43898	0.00027802	633.3425107108234	47.906	0.69502	47.954	47.695	48.39	0.047523	0.038553	0.0001541	NaN	5.7319	62	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3164200	+		41404	18343	23921	23922							0.04927639676839135
RYLNCILP	8	Unmodified	_RYLNCILP_					0	0	0			REV__ENST00000365779.2_1_X:21871543-21871606:+|nuORF	REV__ENST00000365779.2_1_X:21871543-21871606:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2720642089844	2	496.273312	990.532072	0.49201	0.00024417	-2.3534	-0.0011679	-1.8614	-0.00092375	496.2716197254213	46.065	0.84929	46.065	45.501	46.35	0					58	30	3	0	0	0	0.32435	1	10338	10338		23.148	8.5667	1	886640	+		41405	20292	23922	23923	50507	50507					0.03642721779340263
RYLNEFEEL	9	Unmodified	_RYLNEFEEL_					0	0	0		nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENSG00000086232|ENST00000199389|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.7985229492188	2	606.798403	1211.58225	0.31071	0.00018854	-0.33147	-0.00020114	-0.020756	-1.2595E-05	606.7981987668002	57.122	1.6856	57.103	56.754	58.44	-0.019081					180	61	5	0	0	0	0.00051734	2	13752	13752;13802		128.93	76.664	1	12996000			41406	1280	23923	23924	50508;50509	50508					-0.015074970817977373
RYLNELKWSF	10	Unmodified	_RYLNELKWSF_					0	0	0		ENST00000475818.5_1_3:13522761-13543460:+|nuORF;ENSG00000163517|ENST00000295757|HDAC11	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.2337341308594	3	452.575067	1354.70337	0.14288	6.4665E-05	-1.3196	-0.00059721	-1.1767	-0.00053255	452.5744302301162	17.561	0.4674	17.5	17.298	17.766	-0.060429					23	15	2	0	0	0	0.32148	1	1642	1642		1.4551	1.4551	1	41234			41407	5692	23924	23925	50510	50510					0.04020750351492097
RYLNELKWSF	10	Unmodified	_RYLNELKWSF_					0	0	0		ENST00000475818.5_1_3:13522761-13543460:+|nuORF;ENSG00000163517|ENST00000295757|HDAC11	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	ENST00000475818.5_1_3:13522761-13543460:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	452.575067	1354.70337	0.14444	6.537E-05	-1.3524	-0.00061205	-1.2079	-0.00054668	452.57435849167297	17.411	0.44694	17.411	17.151	17.598	0	-0.04011	-0.00010648	NaN	1.4551	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28324			41408	5692	23924	23925							0.04020750351492097
RYLNKSFVL	9	Unmodified	_RYLNKSFVL_					0	0	0		ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8220825195312	2	570.332216	1138.64988	0.38456	0.00021933	-0.39241	-0.00022381	-0.0078574	-4.4813E-06	570.3318628308016	44.441	0.67553	44.441	44.206	44.881	0					55	24	3	0	0	0	0.18208	2	9833	9833;9889		26.268	11.43	1	1030200			41409	3654	23925	23926	50511;50512	50511					0.08609997639655376
RYLNKSFVL	9	Unmodified	_RYLNKSFVL_					0	0	0		ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8219604492188	2	570.332216	1138.64988	0.45705	0.00026067	-0.55093	-0.00031422	-0.093884	-5.3545E-05	570.3319033584853	44.125	0.7402	44.202	43.92	44.66	0.077518					43	27	2	0	0	0	0.20626	1	9774	9774		22.736	7.898	1	1107900			41410	3654	23925	23926	50513	50513					0.08609997639655376
RYLNKSFVL	9	Unmodified	_RYLNKSFVL_					0	0	0		ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8222045898438	2	570.332216	1138.64988	0.22479	0.0001282	-0.36605	-0.00020877	-0.14126	-8.0567E-05	570.3319766213355	44.006	0.65409	44.09	43.97	44.624	0.083996					52	23	3	0	0	0	0.20626	2	9718	9718;9770		22.736	7.898	1	1075200			41411	3654	23925	23926	50514;50515	50514					0.08609997639655376
RYLPDTLLL	9	Unmodified	_RYLPDTLLL_					0	0	0		ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.3262939453125	2	552.326599	1102.63865	0.35907	0.00019832	-0.53226	-0.00029398	-0.17319	-9.566E-05	552.3267640992925	68.012	3.0099	68.012	67.647	70.657	0					340	109	6	0	0	0	0.018449	7	17066	17066;17109;17158;17206;17247;17255;17311		66.457	10.28	1	40510000			41412	1434	23926	23927	50516;50517;50518;50519;50520;50521;50522	50516					0.09143175545523263
RYLPDTLLL	9	Unmodified	_RYLPDTLLL_					0	0	0		ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.326416015625	2	552.326599	1102.63865	0.4755	0.00026263	-0.67405	-0.0003723	-0.19855	-0.00010966	552.3266772676917	67.933	3.0191	68.011	67.628	70.647	0.078041					315	108	6	0	0	0	0.014206	6	17028	17028;17071;17114;17158;17201;17279		72.968	16.791	1	41901000			41413	1434	23926	23927	50523;50524;50525;50526;50527;50528	50523					0.09143175545523263
RYLPDTLLL	9	Unmodified	_RYLPDTLLL_					0	0	0		ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.3272705078125	2	552.326599	1102.63865	0.36372	0.00020089	-0.5529	-0.00030538	-0.18918	-0.00010449	552.326746665405	67.997	3.004	67.981	67.644	70.648	-0.016296					325	107	6	0	0	0	0.018449	6	17093	17047;17093;17143;17194;17240;17256		66.457	10.28	1	42102000			41414	1434	23926	23927	50529;50530;50531;50532;50533;50534	50530					0.09143175545523263
RYLPKGFLNQF	11	Unmodified	_RYLPKGFLNQF_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;PTK2|p.Q300Hfs*16|1|0.02|ENSG00000169398|chr8:140803618-140803619|-/AAATAGGGATGTTTTAGAATTG|frameshift_variant	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.59075927734375	3	461.590828	1381.75066	0.043614	2.0132E-05	0.18444	8.5138E-05	0.22806	0.00010527	461.5908592197661	57.613	0.77635	57.596	57.229	58.005	-0.0172					66	28	4	0	0	0	0.0096108	1	13886	13886		70.496	56.277	1	1282800			41415	6354	23927	23928	50535	50535					0.07505029622507209
RYLPKGFLNQF	11	Unmodified	_RYLPKGFLNQF_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;PTK2|p.Q300Hfs*16|1|0.02|ENSG00000169398|chr8:140803618-140803619|-/AAATAGGGATGTTTTAGAATTG|frameshift_variant	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	461.590828	1381.75066	0.16016	7.3928E-05	0.11138	5.1413E-05	0.27154	0.00012534	461.59083271349505	57.359	0.59306	57.359	57.012	57.605	0	-0.019966	-7.1828E-06	NaN	70.496	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	796880			41416	6354	23927	23928							0.07505029622507209
RYLPKGFLNQF	11	Unmodified	_RYLPKGFLNQF_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;PTK2|p.Q300Hfs*16|1|0.02|ENSG00000169398|chr8:140803618-140803619|-/AAATAGGGATGTTTTAGAATTG|frameshift_variant	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	461.590828	1381.75066	0.071718	3.3104E-05	0.05609	2.5891E-05	0.12781	5.8995E-05	461.59082893460555	57.104	0.57837	57.182	56.959	57.538	0.078674	-0.19688	-8.375E-05	NaN	70.496	57	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	981920			41417	6354	23927	23928							0.07505029622507209
RYLPQTYVV	9	Unmodified	_RYLPQTYVV_					0	0	0		nc|ENSG00000078596|O43736-2|ITM2A;ENST00000469541.5_1_X:78616588-78622401:-|nuORF;ENSG00000078596|ENST00000373298|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.2906494140625	2	569.816399	1137.61824	0.43942	0.00025039	-0.44905	-0.00025588	-0.0096364	-5.491E-06	569.8160185146314	50.277	0.46695	50.277	50.077	50.544	0					34	16	3	0	0	0	0.25779	1	11714	11714		6.2058	1.8765	1	400640			41418	1111	23928	23929	50536	50536					0.05494004885690629
RYLPQTYVV	9	Unmodified	_RYLPQTYVV_					0	0	0		nc|ENSG00000078596|O43736-2|ITM2A;ENST00000469541.5_1_X:78616588-78622401:-|nuORF;ENSG00000078596|ENST00000373298|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2902221679688	2	569.816399	1137.61824	0.8897	0.00050696	-0.94511	-0.00053854	-0.055419	-3.1578E-05	569.8157247707738	50.205	0.43093	50.25	50.06	50.491	0.044891					32	15	3	0	0	0	0.26068	1	11696	11696		3.2813	1.4371	1	374480			41419	1111	23928	23929	50537	50537					0.05494004885690629
RYLPQTYVV	9	Unmodified	_RYLPQTYVV_					0	0	0		nc|ENSG00000078596|O43736-2|ITM2A;ENST00000469541.5_1_X:78616588-78622401:-|nuORF;ENSG00000078596|ENST00000373298|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	nc|ENSG00000078596|O43736-2|ITM2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.2905883789062	2	569.816399	1137.61824	0.80835	0.00046061	-1.3029	-0.0007424	-0.49452	-0.00028179	569.8156873782625	50.289	0.48299	50.31	50.095	50.578	0.020691					26	17	2	0	0	0	0.25779	1	11709	11709		6.2058	0.9089	1	258950			41420	1111	23928	23929	50538	50538					0.05494004885690629
RYLPTGSFPF	10	Unmodified	_RYLPTGSFPF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.8087158203125	2	592.808574	1183.60259	0.56489	0.00033487	-0.27934	-0.0001656	0.28555	0.00016928	592.8082554867002	66.43	1.1808	66.43	66.099	67.279	0					109	41	4	0	0	0	0.0046086	4	16639	16593;16639;16684;16738		93.938	69.918	1	2071300			41421	12630	23929	23930	50539;50540;50541;50542	50540					0.01813718368634909
RYLPTGSFPF	10	Unmodified	_RYLPTGSFPF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.8086547851562	2	592.808574	1183.60259	0.52591	0.00031176	-0.15736	-9.3286E-05	0.36854	0.00021848	592.8082959372126	66.311	1.1988	66.395	66.02	67.219	0.083832					114	42	4	0	0	0	0.0057544	4	16587	16539;16587;16635;16691		87.258	63.238	1	2207200			41422	12630	23929	23930	50543;50544;50545;50546	50544					0.01813718368634909
RYLPTGSFPF	10	Unmodified	_RYLPTGSFPF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.8087158203125	2	592.808574	1183.60259	0.35753	0.00021195	-0.11793	-6.9907E-05	0.23961	0.00014204	592.8083325689577	66.438	1.1514	66.424	66.032	67.184	-0.013596					114	41	4	0	0	0	0.0057544	4	16627	16576;16627;16681;16733		87.258	63.238	1	2213000			41423	12630	23929	23930	50547;50548;50549;50550	50548					0.01813718368634909
RYLPTGSFPFL	11	Unmodified	_RYLPTGSFPFL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.29052734375	2	649.350606	1296.68666	0.26455	0.00017179	-0.27293	-0.00017722	-0.008375	-5.4383E-06	649.3505764183643	76.194	0.40977	76.194	75.957	76.367	0					19	14	2	0	0	0	0.32526	1	19551	19551		16.566	7.1828	1	158960			41424	12630	23930	23931	50551	50551					0.05018249465547342
RYLPTGSFPFL	11	Unmodified	_RYLPTGSFPFL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.2899169921875	2	649.350606	1296.68666	0.23539	0.00015285	-0.20783	-0.00013495	0.027564	1.7899E-05	649.3507694075554	76.096	0.40387	76.15	75.916	76.32	0.053413					19	13	2	0	0	0	0.2981	1	19566	19566		27.223	11.975	1	227240			41425	12630	23930	23931	50552	50552					0.05018249465547342
RYLQTLTTI	9	Unmodified	_RYLQTLTTI_					0	0	0		nc|ENSG00000148175|P27105-2|STOM;ENSG00000148175|ENST00000286713|STOM	nc|ENSG00000148175|P27105-2|STOM	nc|ENSG00000148175|P27105-2|STOM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.8217163085938	2	554.821681	1107.62881	0.30842	0.00017112	-0.13632	-7.5632E-05	0.1721	9.5487E-05	554.8218379885393	52.216	2.0241	52.216	51.809	53.834	0					149	74	5	0	0	0	0.0013924	5	12282	12189;12237;12282;12325;12388		117.76	44.793	1	24301000			41426	4794	23931	23932	50553;50554;50555;50556;50557	50555					0.0792998754011478
RYLQTLTTI	9	Unmodified	_RYLQTLTTI_					0	0	0		nc|ENSG00000148175|P27105-2|STOM;ENSG00000148175|ENST00000286713|STOM	nc|ENSG00000148175|P27105-2|STOM	nc|ENSG00000148175|P27105-2|STOM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.8217163085938	2	554.821681	1107.62881	0.35422	0.00019653	-0.24102	-0.00013372	0.1132	6.2807E-05	554.8218026100989	52.118	1.2598	52.169	51.846	53.106	0.050571					119	45	5	0	0	0	0.00051734	3	12250	12168;12210;12250		128.93	46.403	1	26273000			41427	4794	23931	23932	50558;50559;50560	50560					0.0792998754011478
RYLQTLTTI	9	Unmodified	_RYLQTLTTI_					0	0	0		nc|ENSG00000148175|P27105-2|STOM;ENSG00000148175|ENST00000286713|STOM	nc|ENSG00000148175|P27105-2|STOM	nc|ENSG00000148175|P27105-2|STOM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.822265625	2	554.821681	1107.62881	0.10359	5.7473E-05	-0.011898	-6.6014E-06	0.09169	5.0872E-05	554.8219581156084	52.322	1.2237	52.321	51.902	53.126	-0.00080872					131	44	6	0	0	0	0.0013924	4	12267	12217;12267;12317;12364		117.76	35.231	1	26329000			41428	4794	23931	23932	50561;50562;50563;50564	50562					0.0792998754011478
RYLRVEHHF	9	Unmodified	_RYLRVEHHF_					0	0	0		nc|ENSG00000076555|O00763-3|ACACB;ENSG00000076555|ENST00000338432|ACACB	nc|ENSG00000076555|O00763-3|ACACB	nc|ENSG00000076555|O00763-3|ACACB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.5595703125	3	419.559751	1255.65742	-0.10881	-4.5651E-05	-0.6007	-0.00025203	-0.70951	-0.00029768	419.5596303899028	24.333	1.4676	24.333	23.917	25.384	0					151	50	4	0	0	0	0.016571	3	3708	3708;3751;3798		69.338	51.475	1	2479700			41429	1065	23932	23933	50565;50566;50567	50565					0.039821499599156596
RYLRVEHHF	9	Unmodified	_RYLRVEHHF_					0	0	0		nc|ENSG00000076555|O00763-3|ACACB;ENSG00000076555|ENST00000338432|ACACB	nc|ENSG00000076555|O00763-3|ACACB	nc|ENSG00000076555|O00763-3|ACACB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.5596618652344	3	419.559751	1255.65742	-0.10065	-4.2229E-05	-0.59341	-0.00024897	-0.69406	-0.0002912	419.55963112782706	24.561	1.4256	24.529	24.173	25.599	-0.031925					150	49	5	0	0	0	0.0083763	3	3787	3739;3787;3828		81.915	61.044	1	3241100			41430	1065	23932	23933	50568;50569;50570	50569					0.039821499599156596
RYLSKATTL	9	Unmodified	_RYLSKATTL_					0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.8087768554688	2	526.808574	1051.60259	0.14309	7.5382E-05	0.19517	0.00010282	0.33826	0.0001782	526.8087284141052	28.131	0.80005	28.131	27.84	28.64	0					59	27	3	0	0	0	0.0098873	2	4854	4830;4854		79.596	37.757	1	778560			41431	3456	23933	23934	50571;50572	50572					0.07885718368652306
RYLSKATTL	9	Unmodified	_RYLSKATTL_					0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8087158203125	2	526.808574	1051.60259	0.1752	9.2296E-05	0.31908	0.00016809	0.49428	0.00026039	526.8089126535899	28.12	0.80653	28.116	27.822	28.629	-0.0042572					61	28	3	0	0	0	0.14646	1	4836	4836		43.772	1.9328	1	731220			41432	3456	23933	23934	50573	50573					0.07885718368652306
RYLSKATTL	9	Unmodified	_RYLSKATTL_					0	0	0		nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-4|CDC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8086547851562	2	526.808574	1051.60259	0.13283	6.9976E-05	0.28917	0.00015234	0.422	0.00022231	526.808784000238	28.108	0.73038	28.108	27.849	28.58	0.0004673					59	25	3	0	0	0	0.099099	1	4833	4833		47.594	18.513	1	766160			41433	3456	23933	23934	50574	50574					0.07885718368652306
RYLSPKYIKMF	11	Oxidation (M)	_RYLSPKYIKM(Oxidation (M))F_		RYLSPKYIKM(1)F		RYLSPKYIKM(84)F	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.93572998046875	3	487.935607	1460.78499	0.13628	6.6495E-05	-0.17383	-8.4816E-05	-0.037548	-1.8321E-05	487.93568661408483	40.984	1.1428	40.984	40.388	41.531	0					155	41	5	0	0	0	0.0033936	5	8770	8693;8730;8770;8822;8872		83.652	58.497	1	6453800			41434	5538	23934	23935	50575;50576;50577;50578;50579	50577		667			0.07303109719055101
RYLSPKYIKMF	11	Oxidation (M)	_RYLSPKYIKM(Oxidation (M))F_		RYLSPKYIKM(1)F		RYLSPKYIKM(96)F	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.9357604980469	3	487.935607	1460.78499	0.43108	0.00021034	-0.5094	-0.00024855	-0.078324	-3.8217E-05	487.93555164849056	40.598	1.3378	40.691	40.176	41.513	0.09267					196	49	5	0	0	0	0.001098	5	8662	8597;8615;8662;8712;8762		95.507	80.629	1	6709000			41435	5538	23934	23935	50580;50581;50582;50583;50584	50582		667			0.07303109719055101
RYLSPKYIKMF	11	Oxidation (M)	_RYLSPKYIKM(Oxidation (M))F_		RYLSPKYIKM(1)F		RYLSPKYIKM(88)F	0	0	1		ENSG00000161960|ENST00000293831|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.9358215332031	3	487.935607	1460.78499	0.31586	0.00015412	-0.26863	-0.00013107	0.047233	2.3047E-05	487.93565588561637	40.541	1.2269	40.641	40.173	41.4	0.099403					182	44	5	0	0	0	0.001645	6	8696	8607;8654;8696;8745;8758;8809		87.878	66.201	1	7966300			41436	5538	23934	23935	50585;50586;50587;50588;50589;50590	50587		667			0.07303109719055101
RYLSRIHSR	9	Unmodified	_RYLSRIHSR_					0	0	0		ENST00000360093.7_1_2:166043131-166043215:-|nuORF	ENST00000360093.7_1_2:166043131-166043215:-|nuORF	ENST00000360093.7_1_2:166043131-166043215:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8403930664062	2	594.341438	1186.66832	0.61293	0.00036429	0.55636	0.00033066	1.1693	0.00069496	594.3415829671427	44.349	0.8546	44.417	43.911	44.765	0.068569					45	31	2	0	0	0	0.24289	1	9800	9800		18.146	6.5061	1	582780			41437	9672	23935	23936	50591	50591					0.08245552334210515
RYLTVAAVF	9	Unmodified	_RYLTVAAVF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000454403.1_1_13:41958968-41959286:-|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3004150390625	2	520.300384	1038.58622	0.25889	0.0001347	-0.83181	-0.00043279	-0.57292	-0.00029809	520.3003179151718	61.476	2.532	61.476	61.103	63.635	0					331	94	8	0	0	0	0.03069	6	15099	15048;15099;15150;15189;15232;15272		60.074	16.216	1	51396000			41438	7841	23936	23937	50592;50593;50594;50595;50596;50597	50593					0.06846637202556849
RYLTVAAVF	9	Unmodified	_RYLTVAAVF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000454403.1_1_13:41958968-41959286:-|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3003540039062	2	520.300384	1038.58622	0.05127	2.6676E-05	-0.57214	-0.00029768	-0.52087	-0.00027101	520.3004436432942	61.346	2.3007	61.443	61.116	63.417	0.096985					288	84	8	0	0	0	0.012386	7	15051	15003;15051;15103;15147;15189;15230;15279		75.761	23.492	1	53725000			41439	7841	23936	23937	50598;50599;50600;50601;50602;50603;50604	50599					0.06846637202556849
RYLTVAAVF	9	Unmodified	_RYLTVAAVF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000454403.1_1_13:41958968-41959286:-|nuORF	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.30029296875	2	520.300384	1038.58622	0.10827	5.6332E-05	-0.57046	-0.00029681	-0.46219	-0.00024048	520.3004328128483	61.446	2.5451	61.436	61.077	63.622	-0.0094566					317	93	9	0	0	0	0.012386	5	15074	15025;15074;15122;15167;15222		75.761	25.971	1	51092000			41440	7841	23936	23937	50605;50606;50607;50608;50609	50606					0.06846637202556849
RYLTVATVF	9	Unmodified	_RYLTVATVF_					0	0	0		ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.3056640625	2	535.305667	1068.59678	0.55352	0.0002963	0.90457	0.00048422	1.4581	0.00078052	535.30625688096	60.404	0.91528	60.393	60.026	60.942	-0.011486					110	33	5	0	0	0	0.090256	1	14713	14713		57.722	21.595	1	18329000			41441	8646	23937	23938	50610	50610					0.06522619856991696
RYLTVATVF	9	Unmodified	_RYLTVATVF_					0	0	0		ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	535.305667	1068.59678	0.47524	0.0002544	1.0896	0.00058328	1.5649	0.00083767	535.3062856439357	60.395	1.1089	60.395	60.098	61.207	0	-0.0055208	-6.7779E-05	NaN	49.554	110	40	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16027000			41442	8646	23937	23938							0.06522619856991696
RYLTVATVF	9	Unmodified	_RYLTVATVF_					0	0	0		ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	535.305667	1068.59678	0.13947	7.466E-05	1.3232	0.00070831	1.4627	0.00078297	535.3064147322184	60.319	0.87069	60.415	60.077	60.947	0.095093	0.013629	0.00018229	NaN	49.554	109	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15253000			41443	8646	23937	23938							0.06522619856991696
RYLVEVEEL	9	Unmodified	_RYLVEVEEL_					0	0	0		ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3111572265625	2	575.311146	1148.60774	0.20706	0.00011913	0.016909	9.728E-06	0.22397	0.00012885	575.3110080843634	57.96	0.74991	57.96	57.718	58.468	0					77	26	4	0	0	0	0.0037449	2	14049	13998;14049		96.367	56.417	1	2450900			41444	1322	23938	23939	50611;50612	50612					0.03937977440614304
RYLVEVEEL	9	Unmodified	_RYLVEVEEL_					0	0	0		ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3111572265625	2	575.311146	1148.60774	0.37447	0.00021544	-0.15909	-9.1527E-05	0.21538	0.00012391	575.310901456023	57.784	0.76563	57.869	57.571	58.336	0.085621					66	27	3	0	0	0	0.0024096	2	13980	13932;13980		106.94	59.191	1	2618600			41445	1322	23938	23939	50613;50614	50614					0.03937977440614304
RYLVEVEEL	9	Unmodified	_RYLVEVEEL_					0	0	0		ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3110961914062	2	575.311146	1148.60774	0.41476	0.00023862	-0.24758	-0.00014244	0.16718	9.6182E-05	575.3108584923069	58.088	0.7826	58.071	57.767	58.55	-0.0172					77	28	4	0	0	0	0.0016712	2	14075	14027;14075		114.2	70.343	1	2516500			41446	1322	23938	23939	50615;50616	50616					0.03937977440614304
RYLVISEKL	9	Unmodified	_RYLVISEKL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8399658203125	2	560.839874	1119.66519	0.39241	0.00022008	-0.32155	-0.00018034	0.070868	3.9746E-05	560.8396941570045	44.551	1.5626	44.626	44.229	45.792	0.075047					152	57	5	0	0	0	0.0035713	3	9876	9824;9876;9927		97.741	33.781	1	8041100			41447	2713	23939	23940	50617;50618;50619	50618					0.11014864436833705
RYLVISEKL	9	Unmodified	_RYLVISEKL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.839874	1119.66519	0.53523	0.00030018	-0.44448	-0.00024928	0.090746	5.0894E-05	560.8396162972357	44.812	1.398	44.812	44.462	45.86	0	0.12116	-4.0494E-05	NaN	97.741	136	50	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7933100			41448	2713	23939	23940							0.11014864436833705
RYLVISEKL	9	Unmodified	_RYLVISEKL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.839874	1119.66519	0.52562	0.00029479	-0.45452	-0.00025491	0.0711	3.9876E-05	560.8396193962036	44.567	1.503	44.635	44.298	45.801	0.068573	-0.055839	-5.1757E-05	NaN	97.741	146	53	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9564400			41449	2713	23939	23940							0.11014864436833705
RYLYSASML	9	Oxidation (M)	_RYLYSASM(Oxidation (M))L_		RYLYSASM(1)L		RYLYSASM(110)L	0	0	1		ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-6|WWP1;nc|ENSG00000123124|Q9H0M0-3|WWP1;ENSG00000123124|ENST00000517970|WWP1	ENST00000518683.5_1_8:87410815-87460532:+|nuORF	ENST00000518683.5_1_8:87410815-87460532:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.27880859375	2	560.278792	1118.54303	0.43743	0.00024508	-0.059205	-3.3171E-05	0.37822	0.00021191	560.2787351546046	44.845	0.80228	44.914	44.682	45.484	0.068569					59	28	3	0	0	0	0.0024096	2	9972	9972;10019		106.94	57.386	1	1365300			41450	3088	23940	23941	50620;50621	50620		386			-0.011499206370217507
RYLYSASML	9	Oxidation (M)	_RYLYSASM(Oxidation (M))L_		RYLYSASM(1)L		RYLYSASM(120)L	0	0	1		ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-6|WWP1;nc|ENSG00000123124|Q9H0M0-3|WWP1;ENSG00000123124|ENST00000517970|WWP1	ENST00000518683.5_1_8:87410815-87460532:+|nuORF	ENST00000518683.5_1_8:87410815-87460532:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2788696289062	2	560.278792	1118.54303	0.4345	0.00024344	-0.056775	-3.181E-05	0.37773	0.00021163	560.2786647706241	44.87	0.83154	44.945	44.615	45.446	0.075047					62	30	3	0	0	0	0.0013683	1	9969	9969		118.07	68.514	1	1181700			41451	3088	23940	23941	50622	50622		386			-0.011499206370217507
RYMAIPSPLV	10	Unmodified	_RYMAIPSPLV_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8203735351562	2	573.820627	1145.6267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.54	1	111.52	111.02	112.02	-0.013939								0	0	0	0.37739	1	29016	29016		3.2813	0.28607	1				41452	4711	23941	23942	50623	50623					0.05971235530660124
RYMEVSGNL	9	Oxidation (M)	_RYM(Oxidation (M))EVSGNL_		RYM(1)EVSGNL		RYM(130)EVSGNL	0	0	1		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7584228515625	2	542.758223	1083.50189	0.35499	0.00019267	-0.044561	-2.4186E-05	0.31043	0.00016849	542.7581998808938	31.041	0.85185	31.041	30.701	31.553	0					98	30	4	0	0	0	0.00054549	3	5758	5713;5758;5812		128.57	64.612	1	2868600			41453	7368	23942	23943	50624;50625;50626	50625		817			-0.03651681676501539
RYMEVSGNL	9	Oxidation (M)	_RYM(Oxidation (M))EVSGNL_		RYM(1)EVSGNL		RYM(110)EVSGNL	0	0	1		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7583618164062	2	542.758223	1083.50189	0.33389	0.00018122	-0.0092893	-5.0418E-06	0.3246	0.00017618	542.7582129205634	31.055	0.81051	31.083	30.749	31.559	0.027948					93	28	4	0	0	0	0.0016724	3	5775	5726;5775;5828		114.19	50.226	1	3297700			41454	7368	23942	23943	50627;50628;50629	50628		817			-0.03651681676501539
RYMEVSGNL	9	Oxidation (M)	_RYM(Oxidation (M))EVSGNL_		RYM(1)EVSGNL		RYM(120)EVSGNL	0	0	1		ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.7583618164062	2	542.758223	1083.50189	0.47106	0.00025567	-0.1863	-0.00010111	0.28476	0.00015456	542.7581301542089	30.972	0.87619	30.999	30.669	31.545	0.027157					99	31	4	0	0	0	0.0013864	3	5753	5702;5753;5801		117.84	53.877	1	3388700			41455	7368	23942	23943	50630;50631;50632	50631		817			-0.03651681676501539
RYMPFAPAI	9	Oxidation (M)	_RYM(Oxidation (M))PFAPAI_		RYM(1)PFAPAI		RYM(48)PFAPAI	0	0	1		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.287841796875	2	541.278595	1080.54264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.282	1	51.282	50.782	51.782	0								0	0	0	0.091794	1	11956	11956		48.346	17.078	1				41456	7276	23943	23944	50633	50633		807			0.005587044337517
RYMPFAPAI	9	Oxidation (M)	_RYM(Oxidation (M))PFAPAI_		RYM(1)PFAPAI		RYM(48)PFAPAI	0	0	1		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2879028320312	2	541.278595	1080.54264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.278	1	51.324	50.824	51.824	0.046574								0	0	0	0.091794	1	11953	11953		48.346	22.947	1				41457	7276	23943	23944	50634	50634		807			0.005587044337517
RYMPPAHRNF	10	Oxidation (M)	_RYM(Oxidation (M))PPAHRNF_		RYM(1)PPAHRNF		RYM(44)PPAHRNF	0	0	1		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.5484619140625	3	435.548746	1303.62441	-0.016688	-7.2683E-06	-0.32021	-0.00013947	-0.3369	-0.00014674	435.54844953322885	21.447	0.99283	21.447	20.973	21.966	0					97	35	4	0	0	0	0.11678	1	2861	2861		44.392	36.236	1	802150			41458	3551	23944	23945	50635	50635		451			-0.015258001544225408
RYMPPAHRNF	10	Oxidation (M)	_RYM(Oxidation (M))PPAHRNF_		RYM(1)PPAHRNF		RYM(57)PPAHRNF	0	0	1		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.5482482910156	3	435.548746	1303.62441	0.14433	6.2861E-05	-0.54236	-0.00023622	-0.39803	-0.00017336	435.5483673121821	21.483	1.0715	21.382	20.846	21.917	-0.10034					99	37	4	0	0	0	0.058704	1	2850	2850		57.108	39.995	1	968780			41459	3551	23944	23945	50636	50636		451			-0.015258001544225408
RYMPPAHRNF	10	Oxidation (M)	_RYM(Oxidation (M))PPAHRNF_		RYM(1)PPAHRNF		RYM(51)PPAHRNF	0	0	1		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.5484924316406	3	435.548746	1303.62441	-0.0082947	-3.6127E-06	-0.40558	-0.00017665	-0.41387	-0.00018026	435.5483878013571	21.45	0.99704	21.4	20.951	21.948	-0.049377					96	35	4	0	0	0	0.08437	1	2871	2871		51.488	41.724	1	777860			41460	3551	23944	23945	50637	50637		451			-0.015258001544225408
RYMPQNPHII	10	Oxidation (M)	_RYM(Oxidation (M))PQNPHII_		RYM(1)PQNPHII		RYM(85)PQNPHII	0	0	1		nc|ENSG00000102054|Q16576-2|RBBP7;ENSG00000102054|ENST00000380087|RBBP7	nc|ENSG00000102054|Q16576-2|RBBP7	nc|ENSG00000102054|Q16576-2|RBBP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.8890686035156	3	428.888768	1283.64448	-0.27328	-0.00011721	1.5156	0.00065002	1.2423	0.00053281	428.88985101249517	33.804	2.5258	33.87	33.245	35.77	0.066704					160	90	3	0	0	0	0.0082636	2	6621	6548;6621		84.522	68.248	1	1636200			41461	1742	23945	23946	50638;50639	50639		213			0.013999507855260163
RYMSINTHL	9	Oxidation (M)	_RYM(Oxidation (M))SINTHL_		RYM(1)SINTHL		RYM(61)SINTHL	0	0	1		nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7872924804688	2	575.787315	1149.56008	0.38225	0.0002201	-0.33489	-0.00019283	0.047359	2.7269E-05	575.787056796908	29.737	0.86961	29.737	29.413	30.282	0					90	30	4	0	0	0	0.027957	1	5357	5357		61.09	19.25	1	1107300			41462	3704	23946	23947	50640	50640		466			-0.00872000031222342
RYMSINTHL	9	Oxidation (M)	_RYM(Oxidation (M))SINTHL_		RYM(1)SINTHL		RYM(57)SINTHL	0	0	1		nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7872314453125	2	575.787315	1149.56008	0.38575	0.00022211	-0.41584	-0.00023944	-0.030094	-1.7328E-05	575.7870530839276	29.677	0.89724	29.689	29.361	30.258	0.012266					85	30	4	0	0	0	0.038291	1	5344	5344		57.249	22.847	1	1167300			41463	3704	23946	23947	50641	50641		466			-0.00872000031222342
RYMSINTHL	9	Oxidation (M)	_RYM(Oxidation (M))SINTHL_		RYM(1)SINTHL		RYM(44)SINTHL	0	0	1		nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7871704101562	2	575.787315	1149.56008	0.0056894	3.2759E-06	0.026644	1.5341E-05	0.032333	1.8617E-05	575.7872954547069	29.712	0.81466	29.725	29.421	30.236	0.013474					80	27	4	0	0	0	0.074552	1	5314	5314		43.772	9.3707	1	1319300			41464	3704	23946	23947	50642	50642		466			-0.00872000031222342
RYNERLDRLFI	11	Unmodified	_RYNERLDRLFI_					0	0	0		ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7391357421875	3	498.944042	1493.8103	0.22203	0.00011078	-0.80516	-0.00040173	-0.58313	-0.00029095	499.27775922892613	49.395	0.47922	49.427	49.149	49.628	0.032043					28	16	2	0	0	0	0.33284	1	11362	11362		3.3557	2.0261	1	249170			41465	3666	23947	23948	50643	50643					0.08314300565871235
RYNGGLLEF	9	Unmodified	_RYNGGLLEF_					0	0	0		ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7774047851562	2	534.777274	1067.53999	0.61127	0.00032689	0.066986	3.5822E-05	0.67825	0.00036271	534.7772445844745	57.048	1.4155	57.048	56.713	58.128	0					108	51	3	0	0	0	0.0037772	3	13762	13709;13762;13808		96.111	47.765	1	6107100			41466	8160	23948	23949	50644;50645;50646	50645					0.008925723004722386
RYNGGLLEF	9	Unmodified	_RYNGGLLEF_					0	0	0		ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7772827148438	2	534.777274	1067.53999	0.3473	0.00018573	0.25236	0.00013495	0.59965	0.00032068	534.7773403951022	56.909	1.2861	56.988	56.704	57.99	0.078674					99	47	3	0	0	0	0.0013036	3	13709	13663;13709;13759		118.89	51.551	1	5752700			41467	8160	23948	23949	50647;50648;50649	50648					0.008925723004722386
RYNGGLLEF	9	Unmodified	_RYNGGLLEF_					0	0	0		ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	ENSG00000198919|ENST00000361582|DZIP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7776489257812	2	534.777274	1067.53999	0.36395	0.00019463	0.80796	0.00043208	1.1719	0.00062671	534.7776157290804	57.231	1.381	57.214	56.894	58.275	-0.0172					80	50	2	0	0	0	0.0037772	2	13793	13793;13842		96.111	47.765	1	5888600			41468	8160	23948	23949	50650;50651	50650					0.008925723004722386
RYNHITATY	9	Unmodified	_RYNHITATY_					0	0	0		ENSG00000163788|ENST00000296088|SNRK	ENSG00000163788|ENST00000296088|SNRK	ENSG00000163788|ENST00000296088|SNRK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.7855224609375	2	569.78563	1137.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.029	1	25.99	25.49	26.49	-0.038671								0	0	0	0.23182	1	4233	4233		12.241	3.4953	1				41469	5731	23949	23950	50652	50652					-0.0065692681357631955
RYNHITATY	9	Unmodified	_RYNHITATY_					0	0	0		ENSG00000163788|ENST00000296088|SNRK	ENSG00000163788|ENST00000296088|SNRK	ENSG00000163788|ENST00000296088|SNRK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.7862548828125	2	569.78563	1137.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.046	1	26.024	25.524	26.524	-0.022238								0	0	0	0.20303	1	4234	4234		21.537	9.2963	1				41470	5731	23949	23950	50653	50653					-0.0065692681357631955
RYNLYYAYL	9	Unmodified	_RYNLYYAYL_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3152465820312	2	619.813856	1237.61316	0.32534	0.00020165	-0.41662	-0.00025823	-0.091285	-5.658E-05	619.8133965503619	63.387	0.52761	63.387	63.168	63.695	0					37	18	3	0	0	0	0.074552	1	15706	15706		57.471	44.429	1	294480			41471	4035	23950	23951	50654	50654					0.0038570102308312926
RYNLYYAYL	9	Unmodified	_RYNLYYAYL_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8136596679688	2	619.813856	1237.61316	0.20515	0.00012715	-0.071125	-4.4084E-05	0.13402	8.3069E-05	619.8136331140646	63.236	0.61493	63.332	63.066	63.681	0.095722					39	21	3	0	0	0	0.14786	1	15680	15680		42.095	29.854	1	387730			41472	4035	23950	23951	50655	50655					0.0038570102308312926
RYNLYYAYL	9	Unmodified	_RYNLYYAYL_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8135986328125	2	619.813856	1237.61316	0.33173	0.00020561	-1.0077	-0.00062457	-0.67594	-0.00041896	619.8133513672435	63.479	0.529	63.47	63.217	63.746	-0.0085526					35	18	2	0	0	0	0.14786	1	15722	15722		42.095	29.854	1	464250			41473	4035	23950	23951	50656	50656					0.0038570102308312926
RYNPDGWPMSA	11	Unmodified	_RYNPDGWPMSA_					0	0	0			REV__ENSG00000124226|ENST00000244061|RNF114	REV__ENSG00000124226|ENST00000244061|RNF114	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.52294921875	3	431.860878	1292.56081	0.090094	3.8908E-05	0.66425	0.00028686	0.75435	0.00032577	431.861179195054	48.449	0.42591	48.449	48.18	48.606	0					22	14	2	0	0	0	0.33149	1	11122	11122		2.4348	1.4212	1	147960	+		41474	15225	23951	23952	50657	50657					-0.07377205382158536
RYNPDGWPMSA	11	Unmodified	_RYNPDGWPMSA_					0	0	0			REV__ENSG00000124226|ENST00000244061|RNF114	REV__ENSG00000124226|ENST00000244061|RNF114	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	431.860878	1292.56081	0.33485	0.00014461	0.84389	0.00036444	1.1787	0.00050905	431.86127388546646	48.345	0.37783	48.393	48.285	48.663	0.04752	-0.016195	9.8237E-05	NaN	2.4348	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192140	+		41475	15225	23951	23952							-0.07377205382158536
RYNPDGWPMSA	11	Unmodified	_RYNPDGWPMSA_					0	0	0			REV__ENSG00000124226|ENST00000244061|RNF114	REV__ENSG00000124226|ENST00000244061|RNF114	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	431.860878	1292.56081	0.16036	6.9252E-05	0.77429	0.00033439	0.93465	0.00040364	431.8612430045571	48.342	0.36912	48.385	48.218	48.588	0.04332	-0.023935	8.0664E-06	NaN	2.4348	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250640	+		41476	15225	23951	23952							-0.07377205382158536
RYNPRILFQL	10	Unmodified	_RYNPRILFQL_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.5908508300781	3	440.59094	1318.75099	0.068946	3.0377E-05	-0.13487	-5.9421E-05	-0.06592	-2.9044E-05	440.59086695612984	59.123	0.89668	59.123	58.832	59.728	0					53	31	2	0	0	0	0.22625	3	14356	14356;14404;14456		29.437	18.91	1	1899600			41477	5909	23952	23953	50658;50659;50660	50658					0.1043644934236454
RYNPRILFQL	10	Unmodified	_RYNPRILFQL_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.5909729003906	3	440.59094	1318.75099	0.11567	5.0961E-05	-0.12645	-5.5711E-05	-0.01078	-4.7497E-06	440.59086633861034	58.984	0.8927	59.075	58.764	59.657	0.091301					59	31	2	0	0	0	0.27239	2	14309	14309;14359		23.801	16.324	1	1818800			41478	5909	23952	23953	50661;50662	50661					0.1043644934236454
RYNPRILFQL	10	Unmodified	_RYNPRILFQL_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.5909423828125	3	440.59094	1318.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.073	1	59.059	58.559	59.559	-0.014267								0	0	0	0.32866	1	14355	14355		23.801	10.282	1				41479	5909	23952	23953	50663	50663					0.1043644934236454
RYNPRILFQL	10	Unmodified	_RYNPRILFQL_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.5909118652344	3	440.59094	1318.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.227	1	59.213	58.713	59.713	-0.014267								0	0	0	0.15009	1	14402	14402		46.022	15.591	1				41480	5909	23952	23953	50664	50664					0.1043644934236454
RYNSQLLSF	9	Unmodified	_RYNSQLLSF_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.2954711914062	2	564.29583	1126.57711	0.61217	0.00034545	-0.73967	-0.00041739	-0.1275	-7.1948E-05	564.2952727042054	54.617	0.56959	54.617	54.348	54.917	0					54	20	4	0	0	0	0.059987	1	12969	12969		70.332	28.376	1	1654300			41481	976	23953	23954	50665	50665					0.018882438462242135
RYNSQLLSF	9	Unmodified	_RYNSQLLSF_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.2954711914062	2	564.29583	1126.57711	0.65691	0.00037069	-0.80882	-0.00045642	-0.15191	-8.5724E-05	564.2953347389229	54.565	0.53246	54.628	54.382	54.915	0.063206					57	19	4	0	0	0	0.11201	1	12998	12998		36.506	7.4246	1	1853200			41482	976	23953	23954	50666	50666					0.018882438462242135
RYNSQLLSF	9	Unmodified	_RYNSQLLSF_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.2955322265625	2	564.29583	1126.57711	0.62841	0.00035461	-0.64629	-0.0003647	-0.017879	-1.0089E-05	564.2954745934974	54.861	0.48019	54.845	54.575	55.055	-0.015923					41	17	3	0	0	0	0.048637	1	13027	13027		53.404	19.302	1	1849800			41483	976	23953	23954	50667	50667					0.018882438462242135
RYPALFPVL	9	Unmodified	_RYPALFPVL_					0	0	0		nc|ENSG00000101236|Q9Y225-2|RNF24	nc|ENSG00000101236|Q9Y225-2|RNF24	nc|ENSG00000101236|Q9Y225-2|RNF24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.3187255859375	2	538.318577	1074.6226	0.52139	0.00028067	-0.17123	-9.2174E-05	0.35016	0.0001885	538.3185688522154	73.032	1.54	73.032	72.32	73.86	0					155	55	4	0	0	0	0.062246	4	18615	18568;18615;18663;18712		48.346	30.211	1	1244900			41484	12620	23954	23955	50668;50669;50670;50671	50669					0.08827514099289147
RYPALFPVL	9	Unmodified	_RYPALFPVL_					0	0	0		nc|ENSG00000101236|Q9Y225-2|RNF24	nc|ENSG00000101236|Q9Y225-2|RNF24	nc|ENSG00000101236|Q9Y225-2|RNF24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.3187866210938	2	538.318577	1074.6226	0.40232	0.00021658	-0.27503	-0.00014805	0.12729	6.8523E-05	538.3184900446438	72.974	1.255	73.028	72.408	73.663	0.053833					136	45	4	0	0	0	0.062246	4	18595	18549;18595;18638;18691		48.346	30.211	1	1283600			41485	12620	23954	23955	50672;50673;50674;50675	50673					0.08827514099289147
RYPALFPVL	9	Unmodified	_RYPALFPVL_					0	0	0		nc|ENSG00000101236|Q9Y225-2|RNF24	nc|ENSG00000101236|Q9Y225-2|RNF24	nc|ENSG00000101236|Q9Y225-2|RNF24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.3186645507812	2	538.318577	1074.6226	0.61751	0.00033242	-0.38975	-0.00020981	0.22776	0.0001226	538.3185781830483	73.07	1.6692	73.041	72.332	74.001	-0.029305					165	59	5	0	0	0	0.062246	4	18615	18569;18615;18661;18713		48.346	30.211	1	1180800			41486	12620	23954	23955	50676;50677;50678;50679	50677					0.08827514099289147
RYPDNLKHLY	10	Unmodified	_RYPDNLKHLY_					0	0	0		CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant;ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF	CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant	CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.234619140625	3	440.234933	1317.68297	-1.2455	-0.00054831	0.43786	0.00019276	-0.80763	-0.00035555	440.23510380253686	34.952	0.76574	34.952	34.646	35.412	0					84	27	4	0	0	0	0.097738	2	6972	6923;6972		48.561	31.512	1	1677700			41487	96	23955	23956	50680;50681	50681					0.0368357969173303
RYPDNLKHLY	10	Unmodified	_RYPDNLKHLY_					0	0	0		CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant;ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF	CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant	CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2345275878906	3	440.234933	1317.68297	-1.3275	-0.00058441	0.5852	0.00025762	-0.7423	-0.00032679	440.23514042540023	34.862	0.92913	34.937	34.604	35.533	0.075306					98	31	4	0	0	0	0.066197	2	6934	6890;6934		55.467	33.668	1	1643000			41488	96	23955	23956	50682;50683	50683					0.0368357969173303
RYPDNLKHLY	10	Unmodified	_RYPDNLKHLY_					0	0	0		CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant;ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF	CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant	CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.23443603515625	3	440.234933	1317.68297	-0.79422	-0.00034964	0.19785	8.7099E-05	-0.59637	-0.00026254	440.2350193799335	34.857	1.1306	34.934	34.505	35.636	0.077377					97	34	4	0	0	0	0.19192	2	6870	6870;6914		33.632	22.733	1	1504300			41489	96	23955	23956	50684;50685	50684					0.0368357969173303
RYPDNLKHLYL	11	Unmodified	_RYPDNLKHLYL_					0	0	0		CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant;ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59	CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant	CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.9297180175781	3	477.929621	1430.76703	0.28926	0.00013825	-0.15353	-7.3375E-05	0.13573	6.4871E-05	477.92956688072644	45.07	1.1777	45.07	44.739	45.917	0					147	42	5	0	0	0	0.0061271	2	10047	10000;10047		77.867	60.295	1	6876200			41490	96	23956	23957	50686;50687	50687					0.06888110788622726
RYPDNLKHLYL	11	Unmodified	_RYPDNLKHLYL_					0	0	0		CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant;ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59	CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant	CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.9298095703125	3	477.929621	1430.76703	0.36328	0.00017362	-0.11772	-5.6264E-05	0.24555	0.00011736	477.9295647192475	44.761	1.471	44.829	44.463	45.934	0.068569					157	52	5	0	0	0	0.010584	3	9903	9903;9946;9998		68.436	52.897	1	8249200			41491	96	23956	23957	50688;50689;50690	50688					0.06888110788622726
RYPDNLKHLYL	11	Unmodified	_RYPDNLKHLYL_					0	0	0		CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant;ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59	CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant	CCDC59|p.Q107Efs*20|1|0.06|ENSG00000133773|chr12:82357105-82357106|-/CTTC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.9298095703125	3	477.929621	1430.76703	0.431	0.00020599	-0.2163	-0.00010338	0.21469	0.00010261	477.9295377597049	44.747	1.2634	44.822	44.449	45.713	0.075047					166	46	5	0	0	0	0.010584	4	9936	9888;9936;9984;10037		68.436	54.265	1	6854300			41492	96	23956	23957	50691;50692;50693;50694	50692					0.06888110788622726
RYPDRITLI	9	Unmodified	_RYPDRITLI_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.83544921875	2	573.835123	1145.65569	0.53239	0.0003055	0.021427	1.2296E-05	0.55382	0.0003178	573.8351098888579	47.196	1.0346	47.196	46.789	47.823	0					136	36	4	0	0	0	0.00051734	4	10691	10651;10691;10737;10780		128.93	87.093	1	10425000			41493	4895	23957	23958	50695;50696;50697;50698	50696					0.08869096151329359
RYPDRITLI	9	Unmodified	_RYPDRITLI_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8355102539062	2	573.835123	1145.65569	0.34361	0.00019717	0.22797	0.00013082	0.57158	0.00032799	573.8352390430211	47.105	1.1305	47.158	46.71	47.841	0.052574					140	41	5	0	0	0	0.0016712	5	10651	10579;10604;10651;10698;10741		114.2	80.099	1	11727000			41494	4895	23957	23958	50699;50700;50701;50702;50703	50701					0.08869096151329359
RYPDSHQLF	9	Unmodified	_RYPDSHQLF_					0	0	0		ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.7855834960938	2	581.78563	1161.55671	0.38146	0.00022193	-0.055967	-3.2561E-05	0.32549	0.00018937	581.7855464653106	37.95	1.5878	37.95	37.424	39.012	0					142	56	4	0	0	0	0.0023895	1	7825	7825		107.1	80.216	1	3100100			41495	4187	23958	23959	50704	50704					-0.017609268135856837
RYPDSHQLF	9	Unmodified	_RYPDSHQLF_					0	0	0		ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7857666015625	2	581.78563	1161.55671	0.3501	0.00020368	-0.03268	-1.9012E-05	0.31742	0.00018467	581.7855257217896	37.872	1.441	37.963	37.501	38.942	0.090885					137	52	4	0	0	0	0.0041491	1	7837	7837		93.166	67.767	1	3013400			41496	4187	23958	23959	50705	50705					-0.017609268135856837
RYPDSHQLF	9	Unmodified	_RYPDSHQLF_					0	0	0		ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.7855834960938	2	581.78563	1161.55671	0.28372	0.00016507	0.0054699	3.1823E-06	0.28919	0.00016825	581.7855751671414	37.761	1.4687	37.859	37.452	38.921	0.097527					145	53	4	0	0	0	2.973E-07	2	7771	7771;7819		168.54	134.44	1	3201000			41497	4187	23958	23959	50706;50707	50706					-0.017609268135856837
RYPDTIALTF	10	Unmodified	_RYPDTIALTF_					0	0	0		ENST00000505061.5_1_15:42105116-42107966:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1	ENST00000505061.5_1_15:42105116-42107966:+|nuORF	ENST00000505061.5_1_15:42105116-42107966:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.8193969726562	2	598.819138	1195.62372	0.2221	0.000133	0.16662	9.9776E-05	0.38872	0.00023278	598.8192355055368	65.052	0.93506	65.052	64.699	65.634	0					80	31	4	0	0	0	0.13386	1	16229	16229		40.725	19.135	1	1213900			41498	11309	23959	23960	50708	50708					0.03373683677500594
RYPDTIALTF	10	Unmodified	_RYPDTIALTF_					0	0	0		ENST00000505061.5_1_15:42105116-42107966:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1	ENST00000505061.5_1_15:42105116-42107966:+|nuORF	ENST00000505061.5_1_15:42105116-42107966:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.8193969726562	2	598.819138	1195.62372	0.33253	0.00019912	0.27787	0.00016639	0.6104	0.00036552	598.8193045416998	64.955	0.74935	65.044	64.769	65.519	0.088882					70	27	4	0	0	0	0.13386	1	16152	16152		40.725	19.135	1	1400100			41499	11309	23959	23960	50709	50709					0.03373683677500594
RYPDTIALTF	10	Unmodified	_RYPDTIALTF_					0	0	0		ENST00000505061.5_1_15:42105116-42107966:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1	ENST00000505061.5_1_15:42105116-42107966:+|nuORF	ENST00000505061.5_1_15:42105116-42107966:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	598.819138	1195.62372	0.085708	5.1324E-05	0.38222	0.00022888	0.46793	0.00028021	598.8194568863714	65.09	0.94691	65.079	64.721	65.668	-0.011337	0.020617	0.00013841	NaN	40.725	78	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1343700			41500	11309	23959	23960							0.03373683677500594
RYPGAYYIF	9	Unmodified	_RYPGAYYIF_					0	0	0		ENSG00000140092|ENST00000342058|FBLN5	ENSG00000140092|ENST00000342058|FBLN5	ENSG00000140092|ENST00000342058|FBLN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.6897583007812	2	575.290017	1148.56548	0.15018	8.6397E-05	-0.12731	-7.3238E-05	0.022873	1.3159E-05	575.2898762144682	61.963	0.51292	61.963	61.727	62.24	0					24	18	2	0	0	0	0.24311	1	15228	15228		16.942	1.0951	1	179710			41501	4282	23960	23961	50710	50710					-0.002859531771264301
RYPGAYYIF	9	Unmodified	_RYPGAYYIF_					0	0	0		ENSG00000140092|ENST00000342058|FBLN5	ENSG00000140092|ENST00000342058|FBLN5	ENSG00000140092|ENST00000342058|FBLN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.6897583007812	2	575.290017	1148.56548	-0.032242	-1.8549E-05	-0.090336	-5.197E-05	-0.12258	-7.0518E-05	575.2899807640707	61.947	0.53088	62.044	61.67	62.2	0.096985					27	18	2	0	0	0	0.19839	1	15203	15203		28.487	9.0478	1	209310			41502	4282	23960	23961	50711	50711					-0.002859531771264301
RYPGAYYIF	9	Unmodified	_RYPGAYYIF_					0	0	0		ENSG00000140092|ENST00000342058|FBLN5	ENSG00000140092|ENST00000342058|FBLN5	ENSG00000140092|ENST00000342058|FBLN5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	575.290017	1148.56548	0.00027575	1.5864E-07	-0.727	-0.00041823	-0.72672	-0.00041808	575.2894401931344	62.001	0.4175	61.992	61.7	62.118	-0.0085526	-0.0074938	-0.00043395	NaN	28.487	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197560			41503	4282	23960	23961							-0.002859531771264301
RYPHFKTKI	9	Unmodified	_RYPHFKTKI_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1;ENST00000467015.1_1_1:226016586-226019776:+|nuORF	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7862548828125	2	595.345658	1188.67676	0.39002	0.0002322	-0.26043	-0.00015505	0.12959	7.715E-05	595.3453957098238	24.863	0.13994	24.807	24.748	24.888	-0.055931					6	4	2	0	0	0	0.26257	1	3876	3876		0.52476	0	1	40570			41504	4551	23961	23962	50712	50712					0.08997106250831166
RYPKEFQKL	9	Unmodified	_RYPKEFQKL_					0	0	0		ENSG00000010404|ENST00000340855|IDS;nc|ENSG00000241489|P22304-3|IDS;nc|ENSG00000241489|P22304-2|IDS;ENST00000466019.1_1_X:148577033-148579781:-|nuORF;ENST00000464251.5_1_X:148568821-148584844:-|nuORF	ENSG00000010404|ENST00000340855|IDS	ENSG00000010404|ENST00000340855|IDS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2156982421875	3	403.564391	1207.67134	-0.19983	-8.0645E-05	0.61161	0.00024682	0.41177	0.00016618	403.5645695341072	28.988	0.7066	29.001	28.454	29.161	0.012266					49	24	3	0	0	0	0.22695	1	5141	5141		24.882	14.731	1	270110			41505	424	23962	23963	50713	50713					0.07581382668354308
RYPKRKRKKSE	11	Unmodified	_RYPKRKRKKSE_					0	0	0			REV__ENSG00000167548|ENST00000301067|KMT2D	REV__ENSG00000167548|ENST00000301067|KMT2D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.30792236328125	3	492.635431	1474.88446	0.11341	5.587E-05	-1.5235	-0.00075055	-1.4101	-0.00069468	492.6346148223022	96.202	0.44683	96.202	96.042	96.489	0					50	43	2	0	0	0	0.33334	1	25687	25687		1.2148	0.70888	1	94674	+		41506	17391	23963	23964	50714	50714					0.16601688448076857
RYPKRKRKKSE	11	Unmodified	_RYPKRKRKKSE_					0	0	0			REV__ENSG00000167548|ENST00000301067|KMT2D	REV__ENSG00000167548|ENST00000301067|KMT2D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	492.635431	1474.88446	0.23279	0.00011468	-1.8907	-0.00093142	-1.6579	-0.00081674	492.6344815189379	96.4	0.092583	96.477	96.43	96.522	0.077408	0.13771	-0.00030725	NaN	1.2148	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70233	+		41507	17391	23963	23964							0.16601688448076857
RYPLLLQKI	9	Unmodified	_RYPLLLQKI_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3661499023438	2	572.366059	1142.71756	0.25213	0.00014431	0.18906	0.00010821	0.44119	0.00025252	572.3660363120711	52.403	1.9297	52.403	51.03	52.96	0					183	70	3	0	0	0	0.0033114	8	12378	12032;12086;12136;12183;12230;12276;12328;12378		99.799	24.977	1	1701600			41508	7347	23964	23965	50715;50716;50717;50718;50719;50720;50721;50722	50722					0.15191447570464334
RYPLLLQKI	9	Unmodified	_RYPLLLQKI_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.3662109375	2	572.366059	1142.71756	0.40157	0.00022985	0.018199	1.0416E-05	0.41977	0.00024026	572.3659741207973	52.308	2.1313	52.359	50.876	53.008	0.050571					193	78	3	0	0	0	0.004681	7	12139	12027;12090;12139;12189;12238;12286;12339		88.954	27.596	1	1790400			41509	7347	23964	23965	50723;50724;50725;50726;50727;50728;50729	50725					0.15191447570464334
RYPLLLQKI	9	Unmodified	_RYPLLLQKI_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3660278320312	2	572.366059	1142.71756	0.14042	8.0371E-05	0.25123	0.00014379	0.39165	0.00022417	572.3661194434186	52.551	2.2494	52.55	50.877	53.126	-0.00080872					213	83	3	0	0	0	0.0033114	9	12196	11966;12039;12087;12196;12243;12293;12343;12397;12446		99.799	25.247	1	2029800			41510	7347	23964	23965	50730;50731;50732;50733;50734;50735;50736;50737;50738	50733					0.15191447570464334
RYPNSHTHYF	10	Unmodified	_RYPNSHTHYF_					0	0	0		CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2072448730469	3	441.207266	1320.59997	0.0066266	2.9237E-06	0.18491	8.1585E-05	0.19154	8.4509E-05	441.2072724745454	25.944	1.6751	25.944	25.591	27.266	0					189	58	5	0	0	0	0.0037867	6	4195	4150;4195;4250;4291;4342;4388		98.73	98.73	1	1618400			41511	188	23965	23966	50739;50740;50741;50742;50743;50744	50740					-0.04750737036306418
RYPNSHTHYF	10	Unmodified	_RYPNSHTHYF_					0	0	0		CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2073669433594	3	441.207266	1320.59997	-0.058066	-2.5619E-05	0.26361	0.00011631	0.20554	9.0688E-05	441.2072712692744	26.003	1.8667	25.964	25.609	27.476	-0.03867					217	65	5	0	0	0	0.0014295	6	4219	4173;4219;4264;4313;4366;4418		115.06	115.06	1	1862800			41512	188	23965	23966	50745;50746;50747;50748;50749;50750	50746					-0.04750737036306418
RYPNSHTHYF	10	Unmodified	_RYPNSHTHYF_					0	0	0		CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant;nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	CNOT1|p.I2324Tfs*4|1|0.27|ENSG00000125107|chr16:58521258-58521264|AAGGTAA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2072448730469	3	441.207266	1320.59997	0.18381	8.1099E-05	0.035861	1.5822E-05	0.21967	9.6921E-05	441.20717744563996	26.126	1.9375	26.104	25.579	27.516	-0.022236					211	68	4	0	0	0	0.0011491	7	4265	4175;4215;4265;4313;4355;4399;4444		118.81	100.95	1	1613400			41513	188	23965	23966	50751;50752;50753;50754;50755;50756;50757	50753					-0.04750737036306418
RYPPDIRATF	10	Unmodified	_RYPPDIRATF_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.555908203125	3	412.555895	1234.64586	0.078467	3.2372E-05	0.060679	2.5033E-05	0.13915	5.7405E-05	412.55587677192074	44.428	1.788	44.428	43.713	45.501	0					118	65	2	0	0	0	0.2361	1	10088	10088		20.411	11.967	1	533190			41514	1550	23966	23967	50758	50758					0.03791908145922207
RYPPDIRATF	10	Unmodified	_RYPPDIRATF_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.3300170898438	2	618.330205	1234.64586	0.33923	0.00020976	-0.074946	-4.6342E-05	0.26429	0.00016342	618.3299454799939	44.37	1.6847	44.37	43.681	45.366	0					115	61	2	0	0	0	0.21068	1	9945	9945		51.415	25.147	1	723320			41515	1550	23966	23967	50759	50759					0.03791908145922207
RYPPDIRATF	10	Unmodified	_RYPPDIRATF_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.9078063964844	3	412.555895	1234.64586	0.1944	8.0203E-05	-1.4858	-0.00061297	-1.2914	-0.00053277	412.55524608886725	46.308	0.3255	46.368	46.236	46.562	0.059834					17	11	2	0	0	0	0.26331	1	10413	10413		31.462	22.716	1	273240			41516	1550	23966	23967	50760	50760					0.03791908145922207
RYPPDIRATF	10	Unmodified	_RYPPDIRATF_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.20965576171875	3	412.555895	1234.64586	0.21017	8.6707E-05	-0.30143	-0.00012436	-0.091262	-3.7651E-05	412.890076864476	45.824	1.1657	45.884	45.142	46.307	0.059834					71	41	2	0	0	0	0.31043	1	10121	10121		22.109	18.233	1	521510			41517	1550	23966	23967	50761	50761					0.03791908145922207
RYPPDIRATF	10	Unmodified	_RYPPDIRATF_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.3306274414062	2	618.330205	1234.64586	0.25252	0.00015614	-0.18307	-0.00011319	0.069453	4.2945E-05	618.3300457027481	44.434	1.7326	44.503	43.558	45.291	0.068573					144	63	4	0	0	0	0.16808	1	9850	9850		57.108	48.952	1	506420			41518	1550	23966	23967	50762	50762					0.03791908145922207
RYPPDIRATF	10	Unmodified	_RYPPDIRATF_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.3299560546875	2	618.330205	1234.64586	0.29866	0.00018467	-0.21622	-0.0001337	0.08244	5.0975E-05	618.3300681480567	44.188	1.7994	44.263	43.595	45.394	0.075047					163	66	4	0	0	0	0.10933	1	9763	9763		46.022	25.608	1	698180			41519	1550	23966	23967	50763	50763					0.03791908145922207
RYPPDIRATF	10	Unmodified	_RYPPDIRATF_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.20947265625	3	412.555895	1234.64586	0.31315	0.00012919	-0.30825	-0.00012717	0.0049024	2.0225E-06	412.5556999254917	45.804	1.2472	45.869	45.147	46.394	0.065048					107	45	3	0	0	0	0.25783	1	10222	10222		38.559	28.244	1	486560			41520	1550	23966	23967	50764	50764					0.03791908145922207
RYPPDIRATF	10	Unmodified	_RYPPDIRATF_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	412.555895	1234.64586	0.331	0.00013656	-0.32951	-0.00013594	0.0014866	6.133E-07	412.5557373500382	44.184	1.7799	44.256	43.593	45.373	0.071777	-0.085811	-0.0002237	NaN	20.411	120	65	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	597250			41521	1550	23966	23967							0.03791908145922207
RYPPFPSDYL	10	Unmodified	_RYPPFPSDYL_					0	0	0		ENST00000569957.5_1_16:30012641-30012857:+|nuORF;ENST00000562441.5_1_16:30012641-30015954:+|nuORF;ENSG00000169592|ENST00000563197|INO80E	ENST00000569957.5_1_16:30012641-30012857:+|nuORF	ENST00000569957.5_1_16:30012641-30012857:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.262939453125	2	627.811313	1253.60807	0.42346	0.00026585	0.20504	0.00012873	0.6285	0.00039458	628.313075868276	63.387	0.38457	63.387	63.117	63.502	0					17	13	2	0	0	0	0.31609	1	15717	15717		19.362	11.452	1	166430			41522	6367	23967	23968	50765	50765					-0.008586028395257017
RYPPFPSDYL	10	Unmodified	_RYPPFPSDYL_					0	0	0		ENST00000569957.5_1_16:30012641-30012857:+|nuORF;ENST00000562441.5_1_16:30012641-30015954:+|nuORF;ENSG00000169592|ENST00000563197|INO80E	ENST00000569957.5_1_16:30012641-30012857:+|nuORF	ENST00000569957.5_1_16:30012641-30012857:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.33984375	2	627.811313	1253.60807	0.17688	0.00011105	-0.71524	-0.00044904	-0.53836	-0.00033799	627.8112017392084	63.226	0.38898	63.322	63.122	63.511	0.095722					18	13	2	0	0	0	0.31867	1	15629	15629		8.7454	4.4162	1	177520			41523	6367	23967	23968	50766	50766					-0.008586028395257017
RYPPKSGNYF	10	Unmodified	_RYPPKSGNYF_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.8089599609375	2	614.809105	1227.60366	0.24123	0.00014831	0.046578	2.8637E-05	0.28781	0.00017695	614.8090358007962	30.347	2.1125	30.347	29.441	31.553	0					194	75	3	0	0	0	0.02129	5	5434	5386;5434;5480;5530;5581		84.522	45.025	1	405370			41524	1788	23968	23969	50767;50768;50769;50770;50771	50768					-0.001040672624412764
RYPPKSGNYF	10	Unmodified	_RYPPKSGNYF_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.20843505859375	3	410.208495	1227.60366	-0.026934	-1.1049E-05	0.21498	8.8188E-05	0.18805	7.714E-05	410.2086011988634	30.389	1.9022	30.389	29.521	31.423	0					177	67	4	0	0	0	0.34535	1	5414	5414		13.519	0.64606	1	329870			41525	1788	23968	23969	50772	50772					-0.001040672624412764
RYPPKSGNYF	10	Unmodified	_RYPPKSGNYF_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2085876464844	3	410.208495	1227.60366	0.091038	3.7345E-05	0.0015814	6.4869E-07	0.092619	3.7993E-05	410.2084950188135	30.304	1.9531	30.332	29.575	31.528	0.027946					178	68	3	0	0	0	0.34535	1	5462	5462		13.519	4.7733	1	313790			41526	1788	23968	23969	50773	50773					-0.001040672624412764
RYPPKSGNYF	10	Unmodified	_RYPPKSGNYF_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2437744140625	3	410.208495	1227.60366	0.2262	9.279E-05	0.17583	7.2126E-05	0.40203	0.00016492	410.20873350375217	32.604	1.5817	32.659	31.865	33.447	0.055309					139	56	3	0	0	0	0.31497	1	6389	6389		14.218	3.3192	1	396410			41527	1788	23968	23969	50774	50774					-0.001040672624412764
RYPPKSGNYF	10	Unmodified	_RYPPKSGNYF_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.20843505859375	3	410.208495	1227.60366	-0.11709	-4.803E-05	0.32399	0.0001329	0.2069	8.4873E-05	410.2086950835958	30.423	2.0231	30.45	29.55	31.573	0.027157					180	71	3	0	0	0	0.32615	2	5420	5420;5467		17.049	4.8738	1	276270			41528	1788	23968	23969	50775;50776	50775					-0.001040672624412764
RYPPKSGNYF	10	Unmodified	_RYPPKSGNYF_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	614.809105	1227.60366	0.18268	0.00011232	0.058373	3.5888E-05	0.24106	0.0001482	614.8090806426312	30.284	2.1811	30.312	29.404	31.586	0.027946	0.030567	-5.401E-05	NaN	79.427	180	76	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	364680			41529	1788	23968	23969							-0.001040672624412764
RYPPKSGNYF	10	Unmodified	_RYPPKSGNYF_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	614.809105	1227.60366	0.0070003	4.3039E-06	0.23456	0.00014421	0.24156	0.00014851	614.8091565817502	30.158	2.086	30.185	29.435	31.521	0.027157	-0.096184	0.00016263	NaN	79.427	200	73	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	421140			41530	1788	23968	23969							-0.001040672624412764
RYPPKSGNYF	10	Unmodified	_RYPPKSGNYF_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	410.208495	1227.60366	0.086375	3.5432E-05	0.55688	0.00022844	0.64326	0.00026387	410.20877037639735	32.614	1.5222	32.668	32.072	33.594	0.054375	-0.048883	0.0001495	NaN	14.218	122	54	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354800			41531	1788	23968	23969							-0.001040672624412764
RYPSNLQLF	9	Unmodified	_RYPSNLQLF_					0	0	0		ENSG00000129566|ENST00000262715|TEP1;nc|ENSG00000129566|Q99973-2|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF	ENSG00000129566|ENST00000262715|TEP1	ENSG00000129566|ENST00000262715|TEP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.306396484375	2	569.306198	1136.59784	0.4663	0.00026547	1.4685	0.00083601	1.9348	0.0011015	569.3064179369225	58.634	1.7031	58.62	58.008	59.711	-0.014271					218	60	5	0	0	0	0.0013924	5	14225	14139;14181;14225;14275;14318		117.76	49.68	1	8326400			41532	3433	23969	23970	50777;50778;50779;50780;50781	50779					0.035008342259061465
RYPSNLQLF	9	Unmodified	_RYPSNLQLF_					0	0	0		ENSG00000129566|ENST00000262715|TEP1;nc|ENSG00000129566|Q99973-2|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF	ENSG00000129566|ENST00000262715|TEP1	ENSG00000129566|ENST00000262715|TEP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.306198	1136.59784	0.31379	0.00017864	1.5395	0.00087643	1.8533	0.0010551	569.306436499577	58.617	1.6813	58.617	58.075	59.756	0	0.041159	2.8112E-05	NaN	117.76	207	58	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8529200			41533	3433	23969	23970							0.035008342259061465
RYPSNLQLF	9	Unmodified	_RYPSNLQLF_					0	0	0		ENSG00000129566|ENST00000262715|TEP1;nc|ENSG00000129566|Q99973-2|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF	ENSG00000129566|ENST00000262715|TEP1	ENSG00000129566|ENST00000262715|TEP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	569.306198	1136.59784	0.41337	0.00023534	1.5238	0.00086753	1.9372	0.0011029	569.3063872928617	58.4	1.7576	58.491	57.925	59.683	0.091305	-0.085156	1.0318E-05	NaN	117.76	202	62	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8071600			41534	3433	23969	23970							0.035008342259061465
RYPTSIASL	9	Unmodified	_RYPTSIASL_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.28009033203125	2	504.279649	1006.54475	0.59932	0.00030223	0.54148	0.00027306	1.1408	0.00057528	504.2799420163139	47.426	2.1261	47.426	46.402	48.528	0					190	75	5	0	0	0	0.0013683	6	10759	10563;10616;10660;10709;10759;10803		118.07	21.957	1	13301000			41535	5131	23970	23971	50782;50783;50784;50785;50786;50787	50786					0.04173456443231771
RYPTSIASL	9	Unmodified	_RYPTSIASL_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2802734375	2	504.279649	1006.54475	0.83962	0.0004234	0.3941	0.00019874	1.2337	0.00062214	504.27984553165317	47.378	2.0245	47.432	46.574	48.599	0.054371					212	74	5	0	0	0	0.0024096	7	10676	10533;10581;10626;10676;10717;10766;10815		106.94	21.299	1	16703000			41536	5131	23970	23971	50788;50789;50790;50791;50792;50793;50794	50791					0.04173456443231771
RYPTSIASL	9	Unmodified	_RYPTSIASL_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	504.279649	1006.54475	0.36019	0.00018163	0.81476	0.00041087	1.175	0.0005925	504.2800604271726	47.291	2.3065	47.343	46.417	48.723	0.052574	-0.056969	0.00019766	NaN	118.07	198	85	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14736000			41537	5131	23970	23971							0.04173456443231771
RYPTSIASLAF	11	Unmodified	_RYPTSIASLAF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.3323974609375	2	613.332413	1224.65027	0.14749	9.0461E-05	-0.11047	-6.7755E-05	0.03702	2.2706E-05	613.3322959418774	64.961	2.4552	64.961	64.37	66.825	0					255	88	5	0	0	0	0.001645	6	16151	16057;16102;16151;16201;16246;16295		104.48	62.529	1	11504000			41538	5131	23971	23972	50795;50796;50797;50798;50799;50800	50797					0.04693372568840459
RYPTSIASLAF	11	Unmodified	_RYPTSIASLAF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	613.3324584960938	2	613.332413	1224.65027	0.20827	0.00012774	-0.12991	-7.9679E-05	0.078358	4.806E-05	613.3322796265714	64.874	2.6367	64.964	64.388	67.024	0.089981					245	96	5	0	0	0	0.0012113	5	16090	16040;16090;16140;16188;16235		121.5	73.909	1	11754000			41539	5131	23971	23972	50801;50802;50803;50804;50805	50802					0.04693372568840459
RYPTSIASLAF	11	Unmodified	_RYPTSIASLAF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	613.33251953125	2	613.332413	1224.65027	0.063943	3.9218E-05	0.037446	2.2967E-05	0.10139	6.2185E-05	613.3324014744144	64.991	2.0453	64.979	64.362	66.408	-0.011337					216	74	5	0	0	0	0.0012113	5	16225	16077;16130;16178;16225;16278		101.54	59.977	1	12063000			41540	5131	23971	23972	50806;50807;50808;50809;50810	50809					0.04693372568840459
RYPTTFVMV	9	Oxidation (M)	_RYPTTFVM(Oxidation (M))V_		RYPTTFVM(1)V		RYPTTFVM(110)V	0	0	1		ENST00000470936.1_1_3:69134198-69151212:+|nuORF;ENSG00000144746|ENST00000273258|ARL6IP5	ENST00000470936.1_1_3:69134198-69151212:+|nuORF	ENST00000470936.1_1_3:69134198-69151212:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.2892456054688	2	565.289159	1128.56377	0.5208	0.0002944	0.12019	6.7944E-05	0.64099	0.00036234	565.2889638330231	51.072	1.1855	51.072	50.433	51.619	0					124	43	4	0	0	0	0.0019475	2	11909	11909;11957		110.67	72.701	1	3264200			41541	4610	23972	23973	50811;50812	50811		583			0.004626697426374449
RYPTTFVMV	9	Oxidation (M)	_RYPTTFVM(Oxidation (M))V_		RYPTTFVM(1)V		RYPTTFVM(100)V	0	0	1		ENST00000470936.1_1_3:69134198-69151212:+|nuORF;ENSG00000144746|ENST00000273258|ARL6IP5	ENST00000470936.1_1_3:69134198-69151212:+|nuORF	ENST00000470936.1_1_3:69134198-69151212:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.2892456054688	2	565.289159	1128.56377	0.51012	0.00028837	0.19222	0.00010866	0.70234	0.00039702	565.2890113450572	51.077	1.095	51.123	50.604	51.699	0.046574					121	40	4	0	0	0	0.0028626	1	11895	11895		103.35	74.272	1	3251400			41542	4610	23972	23973	50813	50813		583			0.004626697426374449
RYPTTFVMV	9	Oxidation (M)	_RYPTTFVM(Oxidation (M))V_		RYPTTFVM(1)V		RYPTTFVM(100)V	0	0	1		ENST00000470936.1_1_3:69134198-69151212:+|nuORF;ENSG00000144746|ENST00000273258|ARL6IP5	ENST00000470936.1_1_3:69134198-69151212:+|nuORF	ENST00000470936.1_1_3:69134198-69151212:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.2894287109375	2	565.289159	1128.56377	0.4534	0.0002563	0.24106	0.00013627	0.69445	0.00039257	565.2890703622481	51.168	1.1263	51.178	50.567	51.693	0.0095673					134	42	4	0	0	0	0.003317	2	11898	11853;11898		99.755	63.628	1	3061300			41543	4610	23972	23973	50814;50815	50815		583			0.004626697426374449
RYQALFHDF	9	Unmodified	_RYQALFHDF_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.7960205078125	2	598.795998	1195.57744	0.36696	0.00021974	0.19548	0.00011705	0.56244	0.00033679	598.79616798842	48.745	0.6272	48.777	48.522	49.149	0.032043					41	22	3	0	0	0	0.24467	1	11225	11225		17.113	5.6182	1	919730			41544	6837	23973	23974	50816	50816					-0.012523364339131149
RYQALFHDF	9	Unmodified	_RYQALFHDF_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	598.795998	1195.57744	0.56461	0.00033808	-0.36064	-0.00021595	0.20397	0.00012213	598.7955221673379	48.84	0.49913	48.84	48.665	49.164	0	0.003871	-0.00044102	NaN	17.113	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	892540			41545	6837	23973	23974							-0.012523364339131149
RYQALFHDF	9	Unmodified	_RYQALFHDF_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	598.795998	1195.57744	0.59543	0.00035654	-0.44566	-0.00026686	0.14977	8.9684E-05	598.7955921000605	48.847	0.57608	48.892	48.69	49.266	0.044891	0.055696	-0.00054284	NaN	17.113	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	710990			41546	6837	23973	23974							-0.012523364339131149
RYQDAIRVF	9	Unmodified	_RYQDAIRVF_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3175659179688	2	584.317097	1166.61964	0.55617	0.00032498	-0.082349	-4.8118E-05	0.47382	0.00027686	584.3169544612135	44.612	0.68552	44.612	44.33	45.015	0					90	24	5	0	0	0	8.0996E-05	4	9972	9871;9878;9916;9972		143.91	70.941	1	3931100			41547	1536	23974	23975	50817;50818;50819;50820	50820					0.04299638974453046
RYQDAIRVF	9	Unmodified	_RYQDAIRVF_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3172607421875	2	584.317097	1166.61964	0.44356	0.00025918	-0.0099137	-5.7927E-06	0.43365	0.00025339	584.3169928846377	44.387	0.69258	44.455	44.174	44.867	0.068569					79	25	4	0	0	0	3.6949E-07	4	9838	9795;9838;9891;9910		165.72	62.367	1	4701500			41548	1536	23974	23975	50821;50822;50823;50824	50822					0.04299638974453046
RYQDAIRVF	9	Unmodified	_RYQDAIRVF_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3171997070312	2	584.317097	1166.61964	0.39083	0.00022837	0.0026991	1.5771E-06	0.39353	0.00022995	584.3170005492342	44.3	0.78888	44.375	44.094	44.883	0.075047					86	28	4	0	0	0	3.0646E-11	3	9808	9762;9808;9851		193.29	82.62	1	4138800			41549	1536	23974	23975	50825;50826;50827	50826					0.04299638974453046
RYQDIIHSI	9	Unmodified	_RYQDIIHSI_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.8092041015625	2	572.809105	1143.60366	0.43472	0.00024901	-0.27908	-0.00015986	0.15564	8.9154E-05	572.8089615105889	45.426	0.96371	45.426	45.121	46.085	0					99	34	4	0	0	0	4.3828E-07	4	10157	10112;10157;10208;10259		163.04	105.31	1	5872300			41550	412	23975	23976	50828;50829;50830;50831	50829					0.03759932737557392
RYQDIIHSI	9	Unmodified	_RYQDIIHSI_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.809326171875	2	572.809105	1143.60366	0.51019	0.00029224	-0.40289	-0.00023078	0.1073	6.1461E-05	572.8089298745709	45.093	1.1814	45.162	44.843	46.024	0.068569					113	41	4	0	0	0	1.6153E-16	5	10057	10014;10057;10100;10165;10214		208.15	132.38	1	6400200			41551	412	23975	23976	50832;50833;50834;50835;50836	50833					0.03759932737557392
RYQDIIHSI	9	Unmodified	_RYQDIIHSI_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.8092651367188	2	572.809105	1143.60366	0.3649	0.00020902	-0.20001	-0.00011456	0.16489	9.4452E-05	572.8090383162374	45.106	1.1023	45.182	44.859	45.961	0.07505					115	40	4	0	0	0	4.3828E-07	4	10057	10010;10057;10110;10191		163.04	105.31	1	6199100			41552	412	23975	23976	50837;50838;50839;50840	50838					0.03759932737557392
RYQEVDRRF	9	Unmodified	_RYQEVDRRF_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.55450439453125	3	423.554666	1267.64217	-0.27008	-0.00011439	-0.1257	-5.3241E-05	-0.39578	-0.00016764	423.55461700746747	23.15	0.72363	23.15	22.845	23.569	0					61	24	3	0	0	0	0.083138	2	3371	3330;3371		40.725	26.32	1	539510			41553	1235	23976	23977	50841;50842	50842					0.01905238372069107
RYQEVDRRF	9	Unmodified	_RYQEVDRRF_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.55450439453125	3	423.554666	1267.64217	-0.24288	-0.00010287	-0.20156	-8.5371E-05	-0.44444	-0.00018824	423.55463039570674	23.253	1.0998	23.166	22.82	23.92	-0.087608					72	38	3	0	0	0	0.07848	2	3416	3368;3416		42.312	32.769	1	486460			41554	1235	23976	23977	50843;50844	50844					0.01905238372069107
RYQEVDRRF	9	Unmodified	_RYQEVDRRF_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.55450439453125	3	423.554666	1267.64217	-0.035684	-1.5114E-05	0.047246	2.0011E-05	0.011562	4.8972E-06	423.55460400455996	23.232	1.112	23.187	22.76	23.872	-0.044867					88	39	4	0	0	0	0.10335	2	3407	3361;3407		37.771	28.227	1	547190			41555	1235	23976	23977	50845;50846	50846					0.01905238372069107
RYQFLEEAF	9	Unmodified	_RYQFLEEAF_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;TRIM33|p.M845Nfs*3|1|0.32|ENSG00000197323|chr1:114405644-114405645|-/T|frameshift_variant	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.7957763671875	2	601.795663	1201.57677	0.67198	0.0004044	0.76507	0.00046041	1.4371	0.00086481	601.7962183307961	60.843	1.3151	60.843	60.495	61.81	0					144	48	4	0	0	0	0.0037449	2	14881	14881;14926		96.367	0	1	8167100			41556	7953	23977	23978	50847;50848	50847					-0.01595175873626431
RYQFLEEAF	9	Unmodified	_RYQFLEEAF_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;TRIM33|p.M845Nfs*3|1|0.32|ENSG00000197323|chr1:114405644-114405645|-/T|frameshift_variant	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.7963256835938	2	601.795663	1201.57677	0.63869	0.00038436	0.87918	0.00052909	1.5179	0.00091345	601.7963858625819	60.837	1.4496	60.934	60.528	61.978	0.096985					139	52	4	0	0	0	0.0054984	2	14900	14849;14900		86.332	0	1	7278300			41557	7953	23977	23978	50849;50850	50850					-0.01595175873626431
RYQFLEEAF	9	Unmodified	_RYQFLEEAF_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;TRIM33|p.M845Nfs*3|1|0.32|ENSG00000197323|chr1:114405644-114405645|-/T|frameshift_variant	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.7958374023438	2	601.795663	1201.57677	0.52908	0.0003184	0.85694	0.0005157	1.386	0.0008341	601.7962637272518	60.907	1.382	60.898	60.572	61.954	-0.0094566					135	50	4	0	0	0	0.0054984	1	14882	14882		86.332	0	1	9961400			41558	7953	23977	23978	50851	50851					-0.01595175873626431
RYQFTPAFL	9	Unmodified	_RYQFTPAFL_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119;ENSG00000175970|ENST00000344651|UNC119B	ENSG00000109103|ENST00000335765|UNC119;ENSG00000175970|ENST00000344651|UNC119B	ENSG00000109103|ENST00000335765|UNC119	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7526245117188	2	571.803291	1141.59203	0.046047	2.633E-05	-0.77919	-0.00044555	-0.73315	-0.00041922	571.8026655312257	65.268	0.72408	65.268	64.884	65.608	0					54	25	3	0	0	0	0.12563	1	16278	16278		47.749	29.614	1	901390			41559	2235;6895	23978	23979	50852	50852					0.026897357142161127
RYQFTPAFL	9	Unmodified	_RYQFTPAFL_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119;ENSG00000175970|ENST00000344651|UNC119B	ENSG00000109103|ENST00000335765|UNC119;ENSG00000175970|ENST00000344651|UNC119B	ENSG00000109103|ENST00000335765|UNC119	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.752685546875	2	571.803291	1141.59203	-0.055447	-3.1705E-05	-0.41911	-0.00023965	-0.47456	-0.00027135	571.8027625746113	65.174	0.56966	65.263	65.006	65.576	0.088882					48	20	3	0	0	0	0.15943	1	16242	16242		39.95	27.418	1	975650			41560	2235;6895	23978	23979	50853	50853					0.026897357142161127
RYQFTPAFL	9	Unmodified	_RYQFTPAFL_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119;ENSG00000175970|ENST00000344651|UNC119B	ENSG00000109103|ENST00000335765|UNC119;ENSG00000175970|ENST00000344651|UNC119B	ENSG00000109103|ENST00000335765|UNC119	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7525634765625	2	571.803291	1141.59203	0.040718	2.3283E-05	-0.74687	-0.00042706	-0.70615	-0.00040378	571.8026692084583	65.277	0.53773	65.265	65.048	65.586	-0.011337					56	19	4	0	0	0	0.20881	1	16286	16286		27.629	19.719	1	936190			41561	2235;6895	23978	23979	50854	50854					0.026897357142161127
RYQGVNLYI	9	Unmodified	_RYQGVNLYI_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.8170776367188	2	563.306198	1124.59784	0.4167	0.00023473	-0.391	-0.00022025	0.025703	1.4479E-05	563.3063578363756	54.132	0.49586	54.116	53.865	54.361	-0.015923					28	17	2	0	0	0	0.1939	1	12803	12803		30.637	8.8899	1	488920			41562	1384	23979	23980	50855	50855					0.0405283422589946
RYQGVNLYI	9	Unmodified	_RYQGVNLYI_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.306198	1124.59784	0.52195	0.00029402	-0.66399	-0.00037403	-0.14204	-8.0012E-05	563.306153296575	53.896	0.56979	53.896	53.698	54.268	0	-0.0959	-0.00026938	NaN	37.974	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327020			41563	1384	23979	23980							0.0405283422589946
RYQGVNLYI	9	Unmodified	_RYQGVNLYI_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	563.306198	1124.59784	0.35217	0.00019838	-0.38095	-0.00021459	-0.028781	-1.6212E-05	563.3060293958073	53.907	0.47092	53.964	53.714	54.185	0.056259	-0.028331	4.9502E-05	NaN	37.974	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443190			41564	1384	23979	23980							0.0405283422589946
RYQKSTELL	9	Unmodified	_RYQKSTELL_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.3162841796875	2	569.316763	1136.61897	0.11182	6.3661E-05	0.22621	0.00012878	0.33803	0.00019244	569.3168173068944	26.227	0.48643	26.227	26.042	26.528	0					35	16	3	0	0	0	0.22935	1	4288	4288		19.362	0.98885	1	136280			41565	3640;12118	23980	23981	50856	50856					0.056127995347424076
RYQKSTELL	9	Unmodified	_RYQKSTELL_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B;ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	569.316763	1136.61897	0.22009	0.0001253	-0.038599	-2.1975E-05	0.18149	0.00010333	569.3167919013583	26.277	0.42429	26.239	26.037	26.461	-0.038671	-0.020364	-6.7127E-05	NaN	19.362	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120380			41566	3640;12118	23980	23981							0.056127995347424076
RYQLRHRRGR	10	Unmodified	_RYQLRHRRGR_					0	0	0			REV__ZFR2|p.Q729Rfs*10|1|0.38|ENSG00000105278|chr19:3813876-3813876|T/-|frameshift_variant	REV__ZFR2|p.Q729Rfs*10|1|0.38|ENSG00000105278|chr19:3813876-3813876|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.60821533203125	3	466.608098	1396.80247	0.088782	4.1426E-05	-0.014568	-6.7976E-06	0.074214	3.4629E-05	466.6080534884386	90.162	2.6839	90.253	88.619	91.303	0.090668					480	179	5	0	0	0	0.41512	1	23563	23563		0.69767	0.69767	1	3913900	+		41567	14446	23981	23982	50857	50857					0.11993630879601369
RYQLRHRRGR	10	Unmodified	_RYQLRHRRGR_					0	0	0			REV__ZFR2|p.Q729Rfs*10|1|0.38|ENSG00000105278|chr19:3813876-3813876|T/-|frameshift_variant	REV__ZFR2|p.Q729Rfs*10|1|0.38|ENSG00000105278|chr19:3813876-3813876|T/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	466.608098	1396.80247	0.056339	2.6288E-05	0.035601	1.6612E-05	0.09194	4.29E-05	466.6080710282967	90.432	2.7151	90.432	88.651	91.366	0	0.089587	3.1961E-05	NaN	0.69767	604	185	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3457100	+		41568	14446	23981	23982							0.11993630879601369
RYQLRHRRGR	10	Unmodified	_RYQLRHRRGR_					0	0	0			REV__ZFR2|p.Q729Rfs*10|1|0.38|ENSG00000105278|chr19:3813876-3813876|T/-|frameshift_variant	REV__ZFR2|p.Q729Rfs*10|1|0.38|ENSG00000105278|chr19:3813876-3813876|T/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	466.608098	1396.80247	0.088782	4.1426E-05	-0.014568	-6.7976E-06	0.074214	3.4629E-05	466.6080534884386	90.162	2.6839	90.253	88.619	91.303	0.090668	-0.089587	-3.8267E-05	NaN	0.69767	480	179	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3913900	+		41569	14446	23981	23982							0.11993630879601369
RYQNLLNEF	9	Unmodified	_RYQNLLNEF_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.8070068359375	2	598.806562	1195.59857	0.77631	0.00046486	-0.05554	-3.3257E-05	0.72077	0.0004316	598.8066069610836	58.384	0.6498	58.37	58.063	58.712	-0.014267					54	23	3	0	0	0	0.0023895	2	14150	14150;14205		107.1	59.505	1	1363500			41570	7973	23982	23983	50858;50859	50858					0.008596288749458836
RYQNLLNEF	9	Unmodified	_RYQNLLNEF_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	598.806562	1195.59857	0.52471	0.0003142	-0.24974	-0.00014955	0.27496	0.00016465	598.8064721804764	58.218	0.69764	58.218	57.927	58.624	0	0.022067	-1.2129E-05	NaN	107.1	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	977990			41571	7973	23982	23983							0.008596288749458836
RYQNLLNEF	9	Unmodified	_RYQNLLNEF_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	598.806562	1195.59857	0.52871	0.0003166	-0.62029	-0.00037143	-0.091576	-5.4836E-05	598.8063685468263	57.915	0.5959	58.001	57.765	58.36	0.085621	-0.19549	-0.0004559	NaN	107.1	62	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1024400			41572	7973	23982	23983							0.008596288749458836
RYQQWMERF	9	Oxidation (M)	_RYQQWM(Oxidation (M))ERF_		RYQQWM(1)ERF		RYQQWM(95)ERF	0	0	1		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.8802185058594	3	453.880273	1358.61899	-0.018424	-8.3622E-06	-0.13804	-6.2653E-05	-0.15646	-7.1015E-05	453.8802645223186	38.366	1.7248	38.366	37.895	39.62	0					154	61	4	0	0	0	0.003929	3	8013	7960;8013;8061		94.909	75.283	1	3874300			41573	369	23983	23984	50860;50861;50862	50861		35			-0.045975237369248134
RYQSFGNNHF	10	Unmodified	_RYQSFGNNHF_					0	0	0		ENSG00000167165|ENST00000305139|UGT1A6	ENSG00000167165|ENST00000305139|UGT1A6	ENSG00000167165|ENST00000305139|UGT1A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.8636169433594	3	423.863499	1268.56867	-0.25734	-0.00010908	0.47732	0.00020232	0.21998	9.3241E-05	423.86367090472896	31.415	0.68507	31.415	31.144	31.829	0					71	24	5	0	0	0	0.038178	2	5838	5838;5886		68.76	68.76	1	1536600			41574	6154	23984	23985	50863;50864	50863					-0.0548731007038441
RYQSFGNNHF	10	Unmodified	_RYQSFGNNHF_					0	0	0		ENSG00000167165|ENST00000305139|UGT1A6	ENSG00000167165|ENST00000305139|UGT1A6	ENSG00000167165|ENST00000305139|UGT1A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	635.291259765625	2	635.291611	1268.56867	0.12307	7.8188E-05	0.39225	0.00024919	0.51532	0.00032738	635.2916938544355	31.427	0.52365	31.427	31.171	31.694	0					42	18	3	0	0	0	0.0037867	2	5845	5845;5896		98.73	64.328	1	616200			41575	6154	23984	23985	50865;50866	50865					-0.0548731007038441
RYQSFGNNHF	10	Unmodified	_RYQSFGNNHF_					0	0	0		ENSG00000167165|ENST00000305139|UGT1A6	ENSG00000167165|ENST00000305139|UGT1A6	ENSG00000167165|ENST00000305139|UGT1A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.8636779785156	3	423.863499	1268.56867	-0.286	-0.00012122	0.39384	0.00016693	0.10784	4.571E-05	423.8636690084452	31.454	0.77928	31.496	31.13	31.909	0.042366					67	27	4	0	0	0	0.0092666	2	5893	5844;5893		68.76	68.76	1	1358400			41576	6154	23984	23985	50867;50868	50868					-0.0548731007038441
RYQSFGNNHF	10	Unmodified	_RYQSFGNNHF_					0	0	0		ENSG00000167165|ENST00000305139|UGT1A6	ENSG00000167165|ENST00000305139|UGT1A6	ENSG00000167165|ENST00000305139|UGT1A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	635.291748046875	2	635.291611	1268.56867	0.28449	0.00018073	0.0556	3.5322E-05	0.34009	0.00021605	635.2915467859839	31.503	0.49994	31.545	31.237	31.737	0.042364					39	17	3	0	0	0	0.0071242	1	5857	5857		85.764	58.136	1	555210			41577	6154	23984	23985	50869	50869					-0.0548731007038441
RYQSFGNNHF	10	Unmodified	_RYQSFGNNHF_					0	0	0		ENSG00000167165|ENST00000305139|UGT1A6	ENSG00000167165|ENST00000305139|UGT1A6	ENSG00000167165|ENST00000305139|UGT1A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.863525390625	3	423.863499	1268.56867	-0.058198	-2.4668E-05	0.16193	6.8637E-05	0.10373	4.3969E-05	423.86356992368627	31.301	0.81665	31.342	31.016	31.833	0.040991					80	29	4	0	0	0	0.0047411	2	5842	5797;5842		80.896	71.131	1	1479100			41578	6154	23984	23985	50870;50871	50871					-0.0548731007038441
RYQSFGNNHF	10	Unmodified	_RYQSFGNNHF_					0	0	0		ENSG00000167165|ENST00000305139|UGT1A6	ENSG00000167165|ENST00000305139|UGT1A6	ENSG00000167165|ENST00000305139|UGT1A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	635.2915649414062	2	635.291611	1268.56867	0.51235	0.00032549	-0.12496	-7.9387E-05	0.38738	0.0002461	635.2913336242416	31.293	0.46164	31.334	31.098	31.559	0.040991					43	16	4	0	0	0	0.0044422	2	5813	5813;5859		94.909	67.28	1	574300			41579	6154	23984	23985	50872;50873	50872					-0.0548731007038441
RYQTKFRHL	9	Unmodified	_RYQTKFRHL_					0	0	0		nc|ENSG00000121289|Q96ST8-3|CEP89;nc|ENSG00000121289|Q96ST8-2|CEP89;ENSG00000121289|ENST00000305768|CEP89	nc|ENSG00000121289|Q96ST8-3|CEP89	nc|ENSG00000121289|Q96ST8-3|CEP89	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.90350341796875	3	416.903518	1247.68872	-0.20705	-8.6321E-05	0.01765	7.3583E-06	-0.1894	-7.8963E-05	416.90358124074805	19.395	1.2803	19.395	18.765	20.045	0					151	45	5	0	0	0	0.037019	2	2258	2258;2308		46.022	35.123	1	1534600			41580	2994	23985	23986	50874;50875	50874					0.0747872299402843
RYQTKFRHL	9	Unmodified	_RYQTKFRHL_					0	0	0		nc|ENSG00000121289|Q96ST8-3|CEP89;nc|ENSG00000121289|Q96ST8-2|CEP89;ENSG00000121289|ENST00000305768|CEP89	nc|ENSG00000121289|Q96ST8-3|CEP89	nc|ENSG00000121289|Q96ST8-3|CEP89	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.90350341796875	3	416.903518	1247.68872	0.17538	7.3115E-05	-0.19758	-8.2372E-05	-0.022205	-9.2573E-06	416.903487435386	19.61	1.3939	19.494	18.838	20.232	-0.11592					155	48	5	0	0	0	0.026579	2	2310	2310;2399		49.742	29.755	1	1722100			41581	2994	23985	23986	50876;50877	50876					0.0747872299402843
RYQTKFRHL	9	Unmodified	_RYQTKFRHL_					0	0	0		nc|ENSG00000121289|Q96ST8-3|CEP89;nc|ENSG00000121289|Q96ST8-2|CEP89;ENSG00000121289|ENST00000305768|CEP89	nc|ENSG00000121289|Q96ST8-3|CEP89	nc|ENSG00000121289|Q96ST8-3|CEP89	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.9034423828125	3	416.903518	1247.68872	0.19962	8.3221E-05	-0.27024	-0.00011266	-0.070621	-2.9442E-05	416.9034475196682	19.558	1.3783	19.502	18.848	20.227	-0.055693					160	48	5	0	0	0	0.01909	2	2294	2294;2340		53.47	38.512	1	1918200			41582	2994	23985	23986	50878;50879	50878					0.0747872299402843
RYRDRLQYF	9	Unmodified	_RYRDRLQYF_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant;ENST00000558003.1_1_15:91017136-91017370:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.56646728515625	3	439.566794	1315.67855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.07	1	35.146	34.646	35.646	0.075306								0	0	0	0.20651	1	6984	6984		20.415	10.871	1				41583	4321	23986	23987	50880	50880					0.03334115268785354
RYRDRLQYF	9	Unmodified	_RYRDRLQYF_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant;ENST00000558003.1_1_15:91017136-91017370:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.56646728515625	3	439.566794	1315.67855	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.032	1	35.109	34.609	35.609	0.077377								0	0	0	0.19606	1	6965	6965		23.79	11.615	1				41584	4321	23986	23987	50881	50881					0.03334115268785354
RYRFKLIAF	9	Unmodified	_RYRFKLIAF_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-2|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5	ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5	nc|ENSG00000249715|A0AVI2-4|FER1L5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.22186279296875	3	405.244992	1212.71315	0.11	4.4577E-05	1.9427	0.00078726	2.0527	0.00083184	405.24606894882123	45	0.85319	45	44.462	45.315	0					64	30	3	0	0	0	0.24739	1	9952	9952		5.2969	4.2254	1	150340			41585	8586;12972	23987	23988	50882	50882					0.11529983147556777
RYRFKLIAF	9	Unmodified	_RYRFKLIAF_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-2|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5	ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5	nc|ENSG00000249715|A0AVI2-4|FER1L5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.244992	1212.71315	0.066853	2.7092E-05	2.4869	0.0010078	2.5538	0.0010349	405.2459142353646	44.707	1.3241	44.782	44.389	45.713	0.075047	-0.076141	0.0003918	NaN	5.2969	57	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245800			41586	8586;12972	23987	23988							0.11529983147556777
RYRGDYDRF	9	Unmodified	_RYRGDYDRF_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.1829833984375	3	416.535383	1246.58432	-0.00024667	-1.0275E-07	-0.043321	-1.8045E-05	-0.043567	-1.8147E-05	416.53533227079225	24.544	0.86828	24.508	24.226	25.094	-0.035698					74	29	3	0	0	0	0.26169	1	3880	3880		0.86438	0	1	356490			41587	8390	23988	23989	50883	50883					-0.02911023553360792
RYRIQYKAQF	10	Unmodified	_RYRIQYKAQF_					0	0	0			REV__ENSG00000006016|ENST00000392386|CRLF1	REV__ENSG00000006016|ENST00000392386|CRLF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.75860595703125	3	458.254328	1371.74115	-0.045173	-2.0701E-05	-1.7905	-0.00082052	-1.8357	-0.00084122	458.2528582181565	22.356	0.39989	22.356	22.076	22.476	0					24	13	3	0	0	0	0.31942	1	3102	3102		6.1918	2.3459	1	166490	+		41588	13350	23989	23990	50884	50884					0.07015261336982803
RYRKTHHIE	9	Unmodified	_RYRKTHHIE_					0	0	0		ENSG00000113790|ENST00000231887|EHHADH;nc|ENSG00000113790|Q08426-2|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.5496826171875	3	413.895022	1238.66324	-0.14338	-5.9345E-05	-0.63478	-0.00026273	-0.77816	-0.00032208	413.89470886189173	19.715	0.78788	19.715	19.325	20.113	0					81	28	4	0	0	0	0.2615	1	2331	2331		2.4985	0.59211	1	229090			41589	2531	23990	23991	50885	50885					0.05345248471599007
RYRLQKQLTL	10	Unmodified	_RYRLQKQLTL_					0	0	0			REV__ENSG00000007376|ENST00000007264|RPUSD1	REV__ENSG00000007376|ENST00000007264|RPUSD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.26995849609375	3	440.269978	1317.7881	0.11549	5.0846E-05	-0.067883	-2.9887E-05	0.047606	2.0959E-05	440.26991388160616	43.955	0.7863	44.032	43.736	44.522	0.077515					77	29	4	0	0	0	0.37568	2	9675	9675;9727		7.9454	0.46833	1	2489800	+		41590	13386	23991	23992	50886;50887	50886					0.14192120888128557
RYRLQKQLTL	10	Unmodified	_RYRLQKQLTL_					0	0	0			REV__ENSG00000007376|ENST00000007264|RPUSD1	REV__ENSG00000007376|ENST00000007264|RPUSD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.2699279785156	3	440.269978	1317.7881	0.13362	5.8827E-05	-0.18301	-8.0572E-05	-0.04939	-2.1745E-05	440.2698780676676	43.883	0.74342	43.967	43.684	44.427	0.083992					71	27	4	0	0	0	0.35624	2	9639	9639;9694		11.518	3.5725	1	2343300	+		41591	13386	23991	23992	50888;50889	50888					0.14192120888128557
RYRLVSDLT	9	Unmodified	_RYRLVSDLT_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.81689453125	2	561.81693	1121.61931	0.21732	0.00012209	-0.9258	-0.00052013	-0.70848	-0.00039804	561.8166934274836	37.996	0.96582	38.094	37.74	38.706	0.097527					72	34	3	0	0	0	0.12642	1	7879	7879		34.402	0	1	576380	+		41592	16110	23992	23993	50890	50890					0.06336219254603748
RYRLVSDLT	9	Unmodified	_RYRLVSDLT_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	561.81693	1121.61931	0.27116	0.00015234	-0.80611	-0.00045289	-0.53496	-0.00030055	561.816884675251	38.125	0.83609	38.125	37.735	38.571	0	-0.0034854	0.00013958	NaN	34.402	64	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	626930	+		41593	16110	23992	23993							0.06336219254603748
RYRLVSDLT	9	Unmodified	_RYRLVSDLT_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	561.81693	1121.61931	0.21732	0.00012209	-0.9258	-0.00052013	-0.70848	-0.00039804	561.8166934274836	37.996	0.96582	38.094	37.74	38.706	0.097527	-0.034307	5.1042E-06	NaN	34.402	72	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	576380	+		41594	16110	23992	23993							0.06336219254603748
RYRPGTVAL	9	Unmodified	_RYRPGTVAL_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;nc|ENSG00000273213|Q5TEC6|H3-7	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8014526367188	2	516.801083	1031.58761	0.42861	0.00022151	-0.047634	-2.4617E-05	0.38098	0.00019689	516.8010367600424	30.285	1.3633	30.285	29.97	31.333	0					110	48	4	0	0	0	0.069366	2	5571	5527;5571		45.7	11.298	1	2641100			41595	3640	23993	23994	50891;50892	50892					0.07308271291344681
RYRPGTVAL	9	Unmodified	_RYRPGTVAL_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;nc|ENSG00000273213|Q5TEC6|H3-7	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.8013305664062	2	516.801083	1031.58761	0.34403	0.0001778	0.048027	2.482E-05	0.39206	0.00020262	516.8010839288235	30.289	1.3158	30.317	29.992	31.308	0.027948					107	46	4	0	0	0	0.079752	2	5533	5533;5578		41.84	29.082	1	2402100			41596	3640	23993	23994	50893;50894	50893					0.07308271291344681
RYRPQHIFF	9	Unmodified	_RYRPQHIFF_					0	0	0		ENST00000584031.5_1_17:61511765-61513383:-|nuORF;ENSG00000008283|ENST00000360793|CYB561	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.8965148925781	3	421.896363	1262.66726	-0.12104	-5.1066E-05	0.013209	5.573E-06	-0.10783	-4.5493E-05	421.896550868908	39.953	2.023	39.953	39.48	41.504	0					274	73	5	0	0	0	0.088443	4	8445	8445;8495;8545;8590		39.95	39.95	1	10153000			41597	391	23994	23995	50895;50896;50897;50898	50895					0.04643337965308092
RYRPQHIFF	9	Unmodified	_RYRPQHIFF_					0	0	0		ENST00000584031.5_1_17:61511765-61513383:-|nuORF;ENSG00000008283|ENST00000360793|CYB561	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.3408203125	2	632.340907	1262.66726	0.26409	0.00016699	-0.12749	-8.0619E-05	0.1366	8.6375E-05	632.8422698211177	39.964	1.099	39.964	39.669	40.768	0					99	39	4	0	0	0	0.020233	2	8506	8506;8563		81.613	67.707	1	811200			41598	391	23994	23995	50899;50900	50899					0.04643337965308092
RYRPQHIFF	9	Unmodified	_RYRPQHIFF_					0	0	0		ENST00000584031.5_1_17:61511765-61513383:-|nuORF;ENSG00000008283|ENST00000360793|CYB561	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.8965759277344	3	421.896363	1262.66726	0.10581	4.4643E-05	-0.2224	-9.3831E-05	-0.11659	-4.9188E-05	421.89648742345463	39.759	2.0977	39.851	39.416	41.513	0.09267					255	76	6	0	0	0	0.088443	3	8383	8383;8434;8486		39.95	20.312	1	12452000			41599	391	23994	23995	50901;50902;50903	50901					0.04643337965308092
RYRPQHIFF	9	Unmodified	_RYRPQHIFF_					0	0	0		ENST00000584031.5_1_17:61511765-61513383:-|nuORF;ENSG00000008283|ENST00000360793|CYB561	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.3408813476562	2	632.340907	1262.66726	0.44094	0.00027882	-0.41982	-0.00026547	0.021121	1.3356E-05	632.3408197362598	39.745	1.0092	39.838	39.548	40.557	0.09267					93	35	4	0	0	0	0.037019	2	8428	8428;8477		64.236	46.618	1	891500			41600	391	23994	23995	50904;50905	50904					0.04643337965308092
RYRPQHIFF	9	Unmodified	_RYRPQHIFF_					0	0	0		ENST00000584031.5_1_17:61511765-61513383:-|nuORF;ENSG00000008283|ENST00000360793|CYB561	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.8965759277344	3	421.896363	1262.66726	0.065111	2.747E-05	-0.24541	-0.00010354	-0.1803	-7.6068E-05	421.8964980885763	39.737	1.8121	39.836	39.424	41.236	0.099407					222	65	5	0	0	0	0.13748	3	8379	8379;8427;8469		32.786	16.511	1	12922000			41601	391	23994	23995	50906;50907;50908	50906					0.04643337965308092
RYRPQHIFF	9	Unmodified	_RYRPQHIFF_					0	0	0		ENST00000584031.5_1_17:61511765-61513383:-|nuORF;ENSG00000008283|ENST00000360793|CYB561	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	ENST00000584031.5_1_17:61511765-61513383:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.3412475585938	2	632.340907	1262.66726	0.46087	0.00029143	-0.30043	-0.00018998	0.16044	0.00010145	632.3408244720245	39.772	1.1576	39.871	39.593	40.75	0.099407					93	41	4	0	0	0	0.037019	1	8459	8459		64.236	50.33	1	958150			41602	391	23994	23995	50909	50909					0.04643337965308092
RYRPRAPII	9	Unmodified	_RYRPRAPII_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.3514404296875	2	571.351274	1140.688	0.42123	0.00024067	-0.40833	-0.0002333	0.012902	7.3715E-06	571.351007867913	29.521	0.64388	29.521	29.273	29.917	0					52	22	3	0	0	0	0.088391	1	5282	5282		39.957	19.504	1	322350			41603	862	23995	23996	50910	50910					0.12327928344984684
RYRPRAPII	9	Unmodified	_RYRPRAPII_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.3515014648438	2	571.351274	1140.688	0.39375	0.00022497	-0.21969	-0.00012552	0.17406	9.9449E-05	571.3511300889061	29.452	0.69879	29.464	29.218	29.917	0.012266					53	23	3	0	0	0	0.14076	1	5265	5265		32.305	15.74	1	343310			41604	862	23995	23996	50911	50911					0.12327928344984684
RYRPRAPII	9	Unmodified	_RYRPRAPII_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3516235351562	2	571.351274	1140.688	0.040851	2.334E-05	0.086178	4.9238E-05	0.12703	7.2578E-05	571.3512745935325	29.531	0.55106	29.545	29.329	29.88	0.013475					47	18	3	0	0	0	0.25989	1	5281	5281		14.838	8.1151	1	404020			41605	862	23995	23996	50912	50912					0.12327928344984684
RYRRSQRR	8	Unmodified	_RYRRSQRR_					0	0	0			REV__ENST00000327026.7_1_17:80136426-80141741:-|nuORF	REV__ENST00000327026.7_1_17:80136426-80141741:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.34375	2	589.342304	1176.67005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.21	1	113.21	112.71	113.71	0								0	0	0	0.38004	1	29408	29408		0.69038	0	1		+		41606	20006	23996	23997	50913	50913					0.088786061428209
RYRRSQRR	8	Unmodified	_RYRRSQRR_					0	0	0			REV__ENST00000327026.7_1_17:80136426-80141741:-|nuORF	REV__ENST00000327026.7_1_17:80136426-80141741:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.341796875	2	589.342304	1176.67005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.72	1	113.72	113.22	114.22	0								0	0	0	0.38004	1	29532	29532		0.69038	0	1		+		41607	20006	23996	23997	50914	50914					0.088786061428209
RYRRSQRR	8	Unmodified	_RYRRSQRR_					0	0	0			REV__ENST00000327026.7_1_17:80136426-80141741:-|nuORF	REV__ENST00000327026.7_1_17:80136426-80141741:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3441162109375	2	589.342304	1176.67005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.11	1	115.09	114.59	115.59	-0.020988								0	0	0	0.38004	1	29860	29860		0.69038	0	1		+		41608	20006	23996	23997	50915	50915					0.088786061428209
RYRRSQRR	8	Unmodified	_RYRRSQRR_					0	0	0			REV__ENST00000327026.7_1_17:80136426-80141741:-|nuORF	REV__ENST00000327026.7_1_17:80136426-80141741:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3429565429688	2	589.342304	1176.67005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.18	1	118.16	117.66	118.66	-0.024147								0	0	0	0.38004	1	30561	30561		0.69038	0	1		+		41609	20006	23996	23997	50916	50916					0.088786061428209
RYRRSQRR	8	Unmodified	_RYRRSQRR_					0	0	0			REV__ENST00000327026.7_1_17:80136426-80141741:-|nuORF	REV__ENST00000327026.7_1_17:80136426-80141741:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.343994140625	2	589.342304	1176.67005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.88	1	114.9	114.4	115.4	0.016708								0	0	0	0.38014	1	29865	29865		0.6015	0	1		+		41610	20006	23996	23997	50917	50917					0.088786061428209
RYRVLTKN	8	Unmodified	_RYRVLTKN_					0	0	0			REV__ENST00000328257.12_1_11:73964935-73965235:+|nuORF	REV__ENST00000328257.12_1_11:73964935-73965235:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7750854492188	2	525.314358	1048.61416	0.4174	0.00021926	0.048072	2.5253E-05	0.46547	0.00024452	525.3141650685626	16.558	0.28659	16.558	16.433	16.72	0					15	9	2	0	0	0	0.34272	1	1392	1392		7.9102	2.6795	1	55358	+		41611	20013	23997	23998	50918	50918					0.09179960182632385
RYSDGLLRF	9	Unmodified	_RYSDGLLRF_					0	0	0		nc|ENSG00000061337|Q9Y250-7|LZTS1;nc|ENSG00000061337|Q9Y250-6|LZTS1;nc|ENSG00000061337|Q9Y250-5|LZTS1;nc|ENSG00000061337|Q9Y250-4|LZTS1;nc|ENSG00000061337|Q9Y250-3|LZTS1;nc|ENSG00000061337|Q9Y250-2|LZTS1;ENSG00000061337|ENST00000381569|LZTS1	nc|ENSG00000061337|Q9Y250-7|LZTS1	nc|ENSG00000061337|Q9Y250-7|LZTS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.2924194335938	2	563.803823	1125.59309	0.39156	0.00022076	-1.1096	-0.00062561	-0.71806	-0.00040485	563.8027757475727	48.693	0.69132	48.693	48.386	49.077	0					35	24	2	0	0	0	0.24247	1	11145	11145		17.443	0.50035	1	561980			41612	758	23998	23999	50919	50919					0.03531950083151969
RYSDGLLRF	9	Unmodified	_RYSDGLLRF_					0	0	0		nc|ENSG00000061337|Q9Y250-7|LZTS1;nc|ENSG00000061337|Q9Y250-6|LZTS1;nc|ENSG00000061337|Q9Y250-5|LZTS1;nc|ENSG00000061337|Q9Y250-4|LZTS1;nc|ENSG00000061337|Q9Y250-3|LZTS1;nc|ENSG00000061337|Q9Y250-2|LZTS1;ENSG00000061337|ENST00000381569|LZTS1	nc|ENSG00000061337|Q9Y250-7|LZTS1	nc|ENSG00000061337|Q9Y250-7|LZTS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8024291992188	2	563.803823	1125.59309	0.60401	0.00034054	-0.88928	-0.00050138	-0.28528	-0.00016084	563.8027801187692	48.654	0.49128	48.699	48.497	48.989	0.044888					38	17	3	0	0	0	0.053988	1	11155	11155		51.415	27.395	1	610520			41613	758	23998	23999	50920	50920					0.03531950083151969
RYSDGLLRF	9	Unmodified	_RYSDGLLRF_					0	0	0		nc|ENSG00000061337|Q9Y250-7|LZTS1;nc|ENSG00000061337|Q9Y250-6|LZTS1;nc|ENSG00000061337|Q9Y250-5|LZTS1;nc|ENSG00000061337|Q9Y250-4|LZTS1;nc|ENSG00000061337|Q9Y250-3|LZTS1;nc|ENSG00000061337|Q9Y250-2|LZTS1;ENSG00000061337|ENST00000381569|LZTS1	nc|ENSG00000061337|Q9Y250-7|LZTS1	nc|ENSG00000061337|Q9Y250-7|LZTS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.803466796875	2	563.803823	1125.59309	0.37956	0.000214	-0.45987	-0.00025928	-0.080308	-4.5278E-05	563.8032284244814	48.557	0.49227	48.589	48.309	48.801	0.032043					30	17	2	0	0	0	0.10812	2	11116	11116;11159		37.075	17.636	1	651580			41614	758	23998	23999	50921;50922	50921					0.03531950083151969
RYSDSTFTF	9	Unmodified	_RYSDSTFTF_					0	0	0		nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:49963882-50057668:+|nuORF;ENST00000510040.1_1_5:49962653-49963972:+|nuORF	nc|ENSG00000151883|Q8N3A8-2|PARP8	nc|ENSG00000151883|Q8N3A8-2|PARP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.25634765625	2	562.256371	1122.49819	0.33112	0.00018618	0.012546	7.0542E-06	0.34367	0.00019323	562.2562807642062	49.69	1.0267	49.69	49.38	50.407	0					102	37	4	0	0	0	0.0013924	1	11488	11488		117.76	25.269	1	2022600			41615	4990	23999	24000	50923	50923					-0.058160281787195345
RYSDSTFTF	9	Unmodified	_RYSDSTFTF_					0	0	0		nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:49963882-50057668:+|nuORF;ENST00000510040.1_1_5:49962653-49963972:+|nuORF	nc|ENSG00000151883|Q8N3A8-2|PARP8	nc|ENSG00000151883|Q8N3A8-2|PARP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.25634765625	2	562.256371	1122.49819	0.3683	0.00020708	-0.0084018	-4.7239E-06	0.3599	0.00020236	562.256274811962	49.666	0.89299	49.711	49.425	50.318	0.044891					85	33	4	0	0	0	0.0032746	1	11454	11454		100.09	7.5993	1	2415700			41616	4990	23999	24000	50924	50924					-0.058160281787195345
RYSDSTFTF	9	Unmodified	_RYSDSTFTF_					0	0	0		nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:49963882-50057668:+|nuORF;ENST00000510040.1_1_5:49962653-49963972:+|nuORF	nc|ENSG00000151883|Q8N3A8-2|PARP8	nc|ENSG00000151883|Q8N3A8-2|PARP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.25634765625	2	562.256371	1122.49819	0.2227	0.00012521	0.055469	3.1188E-05	0.27817	0.0001564	562.256288090065	49.665	1.103	49.686	49.284	50.387	0.020691					99	40	4	0	0	0	0.0024096	1	11450	11450		106.94	10.655	1	1999100			41617	4990	23999	24000	50925	50925					-0.058160281787195345
RYSEYAEEF	9	Unmodified	_RYSEYAEEF_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.25927734375	2	597.259111	1192.50367	0.45439	0.00027139	0.13392	7.9988E-05	0.58831	0.00035137	597.2590879487022	43.274	0.86346	43.274	42.93	43.793	0					92	31	5	0	0	0	0.015027	1	9518	9518		71.708	27.85	1	2273400			41618	4239	24000	24001	50926	50926					-0.0848834938692562
RYSEYAEEF	9	Unmodified	_RYSEYAEEF_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.2593383789062	2	597.259111	1192.50367	0.39516	0.00023601	0.14283	8.5309E-05	0.53799	0.00032132	597.2590966200645	42.76	0.73418	42.845	42.565	43.299	0.085197					76	26	4	0	0	0	0.003673	2	9311	9311;9364		96.936	53.077	1	2382400			41619	4239	24000	24001	50927;50928	50927					-0.0848834938692562
RYSEYAEEF	9	Unmodified	_RYSEYAEEF_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.259521484375	2	597.259111	1192.50367	0.20866	0.00012462	0.34107	0.00020371	0.54973	0.00032833	597.2592336556597	42.667	0.86381	42.758	42.499	43.363	0.091362					84	31	4	0	0	0	0.0048951	2	9287	9287;9331		87.258	56.622	1	2278400			41620	4239	24000	24001	50929;50930	50929					-0.0848834938692562
RYSEYAEEF	9	Unmodified	_RYSEYAEEF_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	597.259111	1192.50367	0.68743	0.00041058	0.35842	0.00021407	1.0459	0.00062465	597.2594709275737	43.282	0.10952	43.36	43.291	43.401	0.077515	0.042691	0.00025974	NaN	71.708	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99240			41621	4239	24000	24001							-0.0848834938692562
RYSGNQVLF	9	Unmodified	_RYSGNQVLF_					0	0	0		nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6	nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2831420898438	2	542.282723	1082.55089	0.64193	0.00034811	-2.1413	-0.0011612	-1.4994	-0.0008131	542.2819872302509	43.283	1.6708	43.36	42.145	43.816	0.077515					110	60	3	0	0	0	0.074552	1	9478	9478		43.772	9.67	1	1869200			41622	5383	24001	24002	50931	50931					0.012919746747684258
RYSGNQVLF	9	Unmodified	_RYSGNQVLF_					0	0	0		nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6	nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2831420898438	2	542.282723	1082.55089	0.55006	0.00029829	-1.9229	-0.0010428	-1.3729	-0.00074449	542.2820401532416	43.284	1.9653	43.368	42.03	43.995	0.083992					112	71	3	0	0	0	0.11201	1	9470	9470		36.506	2.4038	1	1936300			41623	5383	24001	24002	50932	50932					0.012919746747684258
RYSIAFPLL	9	Unmodified	_RYSIAFPLL_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3162841796875	2	540.316035	1078.61752	0.53858	0.000291	0.45055	0.00024344	0.98912	0.00053444	540.3161825073922	75.159	1.2948	75.159	74.847	76.141	0					128	46	5	0	0	0	0.018449	2	19308	19308;19349		66.457	26.499	1	5409700			41624	760	24002	24003	50933;50934	50933					0.08135210236650892
RYSIAFPLL	9	Unmodified	_RYSIAFPLL_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3163452148438	2	540.316035	1078.61752	0.51206	0.00027667	0.43262	0.00023375	0.94468	0.00051042	540.316197454522	75.148	1.2668	75.2	74.838	76.104	0.052368					126	46	5	0	0	0	0.020233	2	19278	19278;19320		63.961	24.003	1	5880200			41625	760	24002	24003	50935;50936	50935					0.08135210236650892
RYSIAFPLL	9	Unmodified	_RYSIAFPLL_					0	0	0		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3162841796875	2	540.316035	1078.61752	0.74283	0.00040137	0.6617	0.00035753	1.4045	0.00075889	540.3165568732095	75.217	1.2695	75.186	74.868	76.137	-0.031487					136	46	4	0	0	0	0.012386	4	19312	19312;19354;19404;19426		75.761	35.804	1	5718800			41626	760	24002	24003	50937;50938;50939;50940	50937					0.08135210236650892
RYSKRQRI	8	Unmodified	_RYSKRQRI_					0	0	0			REV__ENST00000584912.5_1_17:37006588-37006753:-|nuORF	REV__ENST00000584912.5_1_17:37006588-37006753:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8303833007812	2	553.830706	1105.64686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.1	1	117.12	116.62	117.62	0.020988								0	0	0	0.37724	1	30367	30367		2.3027	0.24298	1		+		41627	15279	24003	24004	50941	50941					0.09826167305527633
RYSNAQILQF	10	Unmodified	_RYSNAQILQF_					0	0	0		nc|ENSG00000014914|A4FU01-4|MTMR11;ENSG00000014914|ENST00000439741|MTMR11;ENST00000490310.1_1_1:149902202-149903022:-|nuORF;ENST00000482343.5_1_1:149901475-149902499:-|nuORF	nc|ENSG00000014914|A4FU01-4|MTMR11	nc|ENSG00000014914|A4FU01-4|MTMR11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3275756835938	2	620.327662	1238.64077	0.37591	0.00023319	-0.648	-0.00040197	-0.27209	-0.00016878	620.3270992701314	54.419	0.36741	54.482	54.327	54.694	0.063202					29	13	3	0	0	0	0.17257	1	12943	12943		47.732	21.464	1	427030			41628	476	24004	24005	50942	50942					0.030996042833066895
RYSNAQILQF	10	Unmodified	_RYSNAQILQF_					0	0	0		nc|ENSG00000014914|A4FU01-4|MTMR11;ENSG00000014914|ENST00000439741|MTMR11;ENST00000490310.1_1_1:149902202-149903022:-|nuORF;ENST00000482343.5_1_1:149901475-149902499:-|nuORF	nc|ENSG00000014914|A4FU01-4|MTMR11	nc|ENSG00000014914|A4FU01-4|MTMR11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	620.327662	1238.64077	0.57141	0.00035446	-0.72701	-0.00045098	-0.1556	-9.6523E-05	620.3272832233339	54.51	0.48916	54.51	54.296	54.785	0	-0.050886	-0.00020781	NaN	47.732	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	386070			41629	476	24004	24005							0.030996042833066895
RYSPVIKFTIS	11	Unmodified	_RYSPVIKFTIS_					0	0	0			REV__nc|ENSG00000147044|O14936-3|CASK	REV__nc|ENSG00000147044|O14936-3|CASK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.5870361328125	3	437.587084	1309.73942	-0.044027	-1.9265E-05	-0.054525	-2.3859E-05	-0.098552	-4.3125E-05	437.58716231534584	16.343	0.83745	16.28	15.866	16.703	-0.062534					59	28	4	0	0	0	0.47915	1	1287	1287		0.84494	0.068409	1	174220	+		41630	16368	24005	24006	50943	50943					0.09694207528377774
RYSPVLSRF	9	Unmodified	_RYSPVLSRF_					0	0	0		COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8141479492188	2	562.81419	1123.61383	0.33974	0.00019121	-0.077234	-4.3469E-05	0.26251	0.00014774	562.8141403165205	40.728	1.1056	40.728	40.307	41.413	0					139	40	4	0	0	0	9.5135E-08	4	8697	8651;8697;8738;8791		176.43	103.46	1	9254600			41631	193	24006	24007	50944;50945;50946;50947	50945					0.05696540462804478
RYSPVLSRF	9	Unmodified	_RYSPVLSRF_					0	0	0		COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.814208984375	2	562.81419	1123.61383	0.55395	0.00031177	-0.38722	-0.00021793	0.16673	9.3838E-05	562.81393512712	40.391	1.3075	40.483	40.151	41.459	0.09267					153	48	5	0	0	0	3.4202E-05	4	8595	8552;8595;8638;8679		151.48	87.519	1	10207000			41632	193	24006	24007	50948;50949;50950;50951	50949					0.05696540462804478
RYSPVLSRF	9	Unmodified	_RYSPVLSRF_					0	0	0		COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8142700195312	2	562.81419	1123.61383	0.38595	0.00021722	-0.18458	-0.00010388	0.20137	0.00011334	562.8140656718643	40.362	1.3069	40.461	40.118	41.425	0.099403					144	47	5	0	0	0	0.00010651	3	8589	8543;8589;8640		139.78	80.227	1	10808000			41633	193	24006	24007	50952;50953;50954	50953					0.05696540462804478
RYSRKGFLF	9	Unmodified	_RYSRKGFLF_					0	0	0		ENST00000599335.5_1_19:39959399-39965382:+|nuORF;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H	ENST00000599335.5_1_19:39959399-39965382:+|nuORF	ENST00000599335.5_1_19:39959399-39965382:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8314819335938	2	587.330008	1172.64546	0.42521	0.00024974	-0.10402	-6.1096E-05	0.32119	0.00018864	587.3299912026171	35.617	0.87473	35.617	35.354	36.229	0					50	31	2	0	0	0	0.075356	1	7159	7159		47.594	32.346	1	620520			41634	7843	24007	24008	50955	50955					0.06604533216750497
RYSRKGFLF	9	Unmodified	_RYSRKGFLF_					0	0	0		ENST00000599335.5_1_19:39959399-39965382:+|nuORF;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H	ENST00000599335.5_1_19:39959399-39965382:+|nuORF	ENST00000599335.5_1_19:39959399-39965382:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.330078125	2	587.330008	1172.64546	0.36037	0.00021166	-0.11865	-6.9688E-05	0.24172	0.00014197	587.3299607998097	35.584	0.76608	35.666	35.436	36.202	0.082359					57	27	3	0	0	0	0.026579	1	7148	7148		61.602	40.065	1	573250			41635	7843	24007	24008	50956	50956					0.06604533216750497
RYSRKGFLF	9	Unmodified	_RYSRKGFLF_					0	0	0		ENST00000599335.5_1_19:39959399-39965382:+|nuORF;nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H	ENST00000599335.5_1_19:39959399-39965382:+|nuORF	ENST00000599335.5_1_19:39959399-39965382:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.3305053710938	2	587.330008	1172.64546	0.22242	0.00013063	0.14976	8.7958E-05	0.37218	0.00021859	587.330102626039	35.554	0.76928	35.64	35.426	36.196	0.08625					62	27	3	0	0	0	0.11201	2	7126	7126;7204		36.506	21.258	1	560160			41636	7843	24007	24008	50957;50958	50957					0.06604533216750497
RYSSEYGDRD	10	Unmodified	_RYSSEYGDRD_					0	0	0			REV__nc|ENSG00000197579|Q9NS56-2|TOPORS	REV__nc|ENSG00000197579|Q9NS56-2|TOPORS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.5147705078125	3	416.514424	1246.52144	0.21997	9.162E-05	0.85041	0.00035421	1.0704	0.00044583	416.51472730629877	31.885	0.97267	31.926	31.696	32.669	0.040991					73	34	3	0	0	0	0.39009	1	6012	6012		2.8433	2.8433	1	759770	+		41637	18746	24008	24009	50959	50959					-0.09195634132061059
RYSSMAASF	9	Oxidation (M)	_RYSSM(Oxidation (M))AASF_		RYSSM(1)AASF		RYSSM(150)AASF	0	0	1		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2330322265625	2	518.231842	1034.44913	0.21748	0.0001127	-0.27364	-0.00014181	-0.056156	-2.9102E-05	518.2326823155786	28.595	3.6015	28.595	27.981	31.583	0					393	128	6	0	0	0	2.5511E-05	6	4967	4872;4918;4967;5018;5065;5105		152.89	84.805	1	36171000			41638	5560	24009	24010	50960;50961;50962;50963;50964;50965	50962		673			-0.06671639739306556
RYSSMAASF	9	Oxidation (M)	_RYSSM(Oxidation (M))AASF_		RYSSM(1)AASF		RYSSM(150)AASF	0	0	1		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2325439453125	2	518.231842	1034.44913	0.17103	8.8631E-05	-0.23009	-0.00011924	-0.05906	-3.0607E-05	518.2327135446677	28.617	3.5873	28.613	27.966	31.553	-0.0042572					375	126	6	0	0	0	7.3453E-05	6	4928	4881;4928;4978;5028;5076;5113		145.13	83.772	1	45573000			41639	5560	24009	24010	50966;50967;50968;50969;50970;50971	50967		673			-0.06671639739306556
RYSSMAASF	9	Oxidation (M)	_RYSSM(Oxidation (M))AASF_		RYSSM(1)AASF		RYSSM(170)AASF	0	0	1		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2330322265625	2	518.231842	1034.44913	0.03262	1.6905E-05	-0.12373	-6.4123E-05	-0.091114	-4.7218E-05	518.2327787699011	28.598	3.532	28.598	27.935	31.467	0.00046921					385	125	6	0	0	0	3.6949E-07	6	5046	4862;4911;4955;4996;5046;5091		165.72	96.438	1	40090000			41640	5560	24009	24010	50972;50973;50974;50975;50976;50977	50976		673			-0.06671639739306556
RYSVFVNEL	9	Unmodified	_RYSVFVNEL_					0	0	0		ENSG00000135775|ENST00000366669|COG2;nc|ENSG00000135775|Q14746-2|COG2	ENSG00000135775|ENST00000366669|COG2	ENSG00000135775|ENST00000366669|COG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.7985229492188	2	563.798206	1125.58186	0.52192	0.00029426	0.52505	0.00029602	1.047	0.00059028	563.7983994749178	56.468	0.6673	56.468	56.241	56.908	0					41	24	3	0	0	0	0.0042709	1	13571	13571		92.201	48.343	1	804710			41641	3903	24010	24011	50978	50978					0.024091279889944417
RYSVFVNEL	9	Unmodified	_RYSVFVNEL_					0	0	0		ENSG00000135775|ENST00000366669|COG2;nc|ENSG00000135775|Q14746-2|COG2	ENSG00000135775|ENST00000366669|COG2	ENSG00000135775|ENST00000366669|COG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.7984619140625	2	563.798206	1125.58186	0.74535	0.00042022	0.31826	0.00017943	1.0636	0.00059966	563.7982580888026	56.385	0.7678	56.463	56.273	57.04	0.078674					51	28	3	0	0	0	0.0074885	1	13532	13532		83.278	47.151	1	1036500			41642	3903	24010	24011	50979	50979					0.024091279889944417
RYSVFVNEL	9	Unmodified	_RYSVFVNEL_					0	0	0		ENSG00000135775|ENST00000366669|COG2;nc|ENSG00000135775|Q14746-2|COG2	ENSG00000135775|ENST00000366669|COG2	ENSG00000135775|ENST00000366669|COG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7982177734375	2	563.798206	1125.58186	0.84776	0.00047796	0.19298	0.0001088	1.0407	0.00058676	563.7981374897389	56.692	0.60769	56.673	56.456	57.063	-0.019081					57	21	3	0	0	0	0.0030911	2	13609	13609;13660		101.54	57.685	1	808730			41643	3903	24010	24011	50980;50981	50980					0.024091279889944417
RYTALQAFKF	10	Unmodified	_RYTALQAFKF_					0	0	0		ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2	ENSG00000024048|ENST00000372901|UBR2	ENSG00000024048|ENST00000372901|UBR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.7784423828125	2	622.842948	1243.67134	0.36651	0.00022828	-0.28979	-0.00018049	0.076722	4.7786E-05	622.8430451201392	54.297	0.43699	54.282	54.085	54.522	-0.015923					18	14	2	0	0	0	0.31911	1	12935	12935		6.6304	3.6351	1	290180			41644	529	24011	24012	50982	50982					0.05925382668351631
RYTALQAFKF	10	Unmodified	_RYTALQAFKF_					0	0	0		ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2	ENSG00000024048|ENST00000372901|UBR2	ENSG00000024048|ENST00000372901|UBR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	622.842948	1243.67134	0.56107	0.00034946	-0.40115	-0.00024985	0.15992	9.9608E-05	622.8426907998213	53.967	0.49161	53.967	53.749	54.24	0	-0.10423	-0.00015008	NaN	6.6304	29	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158580			41645	529	24011	24012							0.05925382668351631
RYTALQAFKF	10	Unmodified	_RYTALQAFKF_					0	0	0		ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2	ENSG00000024048|ENST00000372901|UBR2	ENSG00000024048|ENST00000372901|UBR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	622.842948	1243.67134	0.074538	4.6426E-05	-0.031537	-1.9643E-05	0.043001	2.6783E-05	622.8428541157523	53.908	0.42065	53.964	53.74	54.161	0.056255	-0.10641	0.00031033	NaN	6.6304	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263820			41646	529	24011	24012							0.05925382668351631
RYTERVDYL	9	Unmodified	_RYTERVDYL_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.5437316894531	3	405.543655	1213.60914	0.032232	1.3071E-05	0.53357	0.00021638	0.5658	0.00022946	405.5437870493859	35.863	0.69668	35.863	35.635	36.332	0					68	25	4	0	0	0	0.2777	1	7218	7218		12.175	1.2758	1	823730			41647	728	24012	24013	50983	50983					0.01087611529374044
RYTERVDYL	9	Unmodified	_RYTERVDYL_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.81201171875	2	607.811845	1213.60914	0.53719	0.00032651	0.015153	9.2102E-06	0.55235	0.00033572	607.811813549784	35.899	0.4811	35.899	35.635	36.117	0					37	17	3	0	0	0	0.23961	1	7250	7250		18.373	5.8415	1	472550			41648	728	24012	24013	50984	50984					0.01087611529374044
RYTERVDYL	9	Unmodified	_RYTERVDYL_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5436706542969	3	405.543655	1213.60914	-0.0040816	-1.6553E-06	0.48047	0.00019485	0.47639	0.0001932	405.5437759294301	35.743	0.63579	35.825	35.598	36.233	0.082355					62	22	4	0	0	0	0.2821	2	7181	7181;7231		11.518	11.518	1	848490			41649	728	24012	24013	50985;50986	50985					0.01087611529374044
RYTERVDYL	9	Unmodified	_RYTERVDYL_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.8119506835938	2	607.811845	1213.60914	0.53227	0.00032352	0.03224	1.9596E-05	0.56451	0.00034312	607.8116885426704	35.782	0.51981	35.864	35.651	36.171	0.082355					36	18	3	0	0	0	0.25909	1	7206	7206		15.248	1.3424	1	449720			41650	728	24012	24013	50987	50987					0.01087611529374044
RYTERVDYL	9	Unmodified	_RYTERVDYL_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.543701171875	3	405.543655	1213.60914	-0.014202	-5.7593E-06	0.58448	0.00023703	0.57028	0.00023127	405.54379029128125	35.752	0.62334	35.838	35.597	36.22	0.08625					56	22	3	0	0	0	0.2777	1	7182	7182		12.175	12.175	1	1011300			41651	728	24012	24013	50988	50988					0.01087611529374044
RYTERVDYL	9	Unmodified	_RYTERVDYL_					0	0	0		nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13	nc|ENSG00000058056|Q92995-2|USP13	nc|ENSG00000058056|Q92995-2|USP13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.8126831054688	2	607.811845	1213.60914	0.36138	0.00021965	0.062413	3.7935E-05	0.42379	0.00025758	607.8118685940465	35.76	0.51993	35.847	35.62	36.14	0.08625					28	18	2	0	0	0	0.22755	1	7196	7196		15.248	5.1746	1	452640			41652	728	24012	24013	50989	50989					0.01087611529374044
RYTIVQQQI	9	Unmodified	_RYTIVQQQI_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.3112182617188	2	574.824755	1147.63496	-0.074673	-4.2924E-05	0.65114	0.00037429	0.57647	0.00033137	574.825159805226	42.493	0.73304	42.493	42.221	42.954	0					53	26	3	0	0	0	0.043711	1	9251	9251		55.235	28.967	1	857730			41653	3492	24013	24014	50990	50990					0.0670450577167685
RYTIVQQQI	9	Unmodified	_RYTIVQQQI_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.8250122070312	2	574.824755	1147.63496	0.39389	0.00022642	0.13141	7.5536E-05	0.5253	0.00030195	574.8248710306349	42.272	0.66799	42.357	42.063	42.731	0.085197					60	23	4	0	0	0	0.01251	1	9175	9175		75.571	41.169	1	1136400			41654	3492	24013	24014	50991	50991					0.0670450577167685
RYTIVQQQI	9	Unmodified	_RYTIVQQQI_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.3112182617188	2	574.824755	1147.63496	0.34229	0.00019676	0.32224	0.00018523	0.66453	0.00038199	574.8249539271685	42.156	0.65524	42.248	42.007	42.663	0.091362					49	22	3	0	0	0	0.01251	1	9136	9136		75.571	44.934	1	924560			41655	3492	24013	24014	50992	50992					0.0670450577167685
RYTLQASTF	9	Unmodified	_RYTLQASTF_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7831420898438	2	543.782556	1085.55056	0.71949	0.00039124	0.63404	0.00034478	1.3535	0.00073603	543.7826058239793	44.657	0.88139	44.657	44.357	45.238	0					89	31	4	0	0	0	0.015027	2	9908	9908;9917		71.708	35.581	1	2432900			41656	700	24014	24015	50993;50994	50993					0.011205549548776617
RYTLQASTF	9	Unmodified	_RYTLQASTF_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.782958984375	2	543.782556	1085.55056	0.74838	0.00040695	0.65957	0.00035866	1.4079	0.00076562	543.7825684060581	44.397	0.89454	44.466	44.199	45.093	0.068569					85	32	4	0	0	0	0.015027	2	9823	9823;9840		71.708	33.532	1	2716600			41657	700	24014	24015	50995;50996	50995					0.011205549548776617
RYTLQASTF	9	Unmodified	_RYTLQASTF_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.782958984375	2	543.782556	1085.55056	0.64651	0.00035156	0.61423	0.00033401	1.2607	0.00068557	543.7826101975659	44.328	0.92044	44.403	44.122	45.042	0.075047					96	33	4	0	0	0	0.015027	1	9827	9827		71.708	31.758	1	2580900			41658	700	24014	24015	50997	50997					0.011205549548776617
RYTPFSNGL	9	Unmodified	_RYTPFSNGL_					0	0	0		nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59;WDR59|p.H425Pfs*25|1|0.07|ENSG00000103091|chr16:74912315-74912316|-/A|frameshift_variant;ENST00000569549.5_1_16:74943656-74957850:-|nuORF	nc|ENSG00000103091|Q6PJI9-2|WDR59;ENST00000569549.5_1_16:74943656-74957850:-|nuORF	nc|ENSG00000103091|Q6PJI9-2|WDR59	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2800903320312	2	527.769448	1053.52434	0.78637	0.00041502	-0.51973	-0.0002743	0.26665	0.00014073	527.7693496680862	47.343	0.44155	47.343	47.137	47.578	0					23	15	2	0	0	0	0.13643	1	10713	10713		38.176	25.644	1	334660			41659	1808;12010	24015	24016	50998	50998					-0.00027714216571439465
RYTPFSNGL	9	Unmodified	_RYTPFSNGL_					0	0	0		nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59;WDR59|p.H425Pfs*25|1|0.07|ENSG00000103091|chr16:74912315-74912316|-/A|frameshift_variant;ENST00000569549.5_1_16:74943656-74957850:-|nuORF	nc|ENSG00000103091|Q6PJI9-2|WDR59;ENST00000569549.5_1_16:74943656-74957850:-|nuORF	nc|ENSG00000103091|Q6PJI9-2|WDR59	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2803955078125	2	527.769448	1053.52434	0.38847	0.00020502	-0.23874	-0.000126	0.14973	7.9024E-05	527.7694494501363	47.199	0.3449	47.251	47.142	47.487	0.05257					18	12	2	0	0	0	0.12056	1	10671	10671		43.982	23.528	1	456300			41660	1808;12010	24015	24016	50999	50999					-0.00027714216571439465
RYTPFSNGL	9	Unmodified	_RYTPFSNGL_					0	0	0		nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59;WDR59|p.H425Pfs*25|1|0.07|ENSG00000103091|chr16:74912315-74912316|-/A|frameshift_variant;ENST00000569549.5_1_16:74943656-74957850:-|nuORF	nc|ENSG00000103091|Q6PJI9-2|WDR59;ENST00000569549.5_1_16:74943656-74957850:-|nuORF	nc|ENSG00000103091|Q6PJI9-2|WDR59	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.280029296875	2	527.769448	1053.52434	1.0857	0.00057301	-0.83236	-0.0004393	0.25336	0.00013372	527.7692428025196	47.27	0.66373	47.324	46.851	47.515	0.054371					33	23	2	0	0	0	0.12056	1	10678	10678		43.982	23.528	1	565710			41661	1808;12010	24015	24016	51000	51000					-0.00027714216571439465
RYTPVGRSFF	10	Unmodified	_RYTPVGRSFF_					0	0	0		ENSG00000123908|ENST00000220592|AGO2;nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000092847|ENST00000373204|AGO1;ENSG00000134698|ENST00000373210|AGO4	ENSG00000123908|ENST00000220592|AGO2;ENSG00000134698|ENST00000373210|AGO4	ENSG00000123908|ENST00000220592|AGO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.5522766113281	3	410.552374	1228.63529	0.15659	6.4289E-05	-0.12185	-5.0027E-05	0.034739	1.4262E-05	410.5522527055359	44.916	1.1654	44.916	44.581	45.746	0					91	42	4	0	0	0	0.2534	1	9986	9986		26.121	19.491	1	970730			41662	3125;3802	24016	24017	51001	51001					0.030119254915234706
RYTPVGRSFF	10	Unmodified	_RYTPVGRSFF_					0	0	0		ENSG00000123908|ENST00000220592|AGO2;nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000092847|ENST00000373204|AGO1;ENSG00000134698|ENST00000373210|AGO4	ENSG00000123908|ENST00000220592|AGO2;ENSG00000134698|ENST00000373210|AGO4	ENSG00000123908|ENST00000220592|AGO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.5523681640625	3	410.552374	1228.63529	0.30404	0.00012482	-0.14179	-5.8211E-05	0.16225	6.6613E-05	410.5522174016587	44.58	0.80106	44.649	44.349	45.15	0.068573					74	28	4	0	0	0	0.23653	2	9875	9875;9928		28.181	13.776	1	1078100			41663	3125;3802	24016	24017	51002;51003	51002					0.030119254915234706
RYTPVGRSFF	10	Unmodified	_RYTPVGRSFF_					0	0	0		ENSG00000123908|ENST00000220592|AGO2;nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000092847|ENST00000373204|AGO1;ENSG00000134698|ENST00000373210|AGO4	ENSG00000123908|ENST00000220592|AGO2;ENSG00000134698|ENST00000373210|AGO4	ENSG00000123908|ENST00000220592|AGO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.5525207519531	3	410.552374	1228.63529	0.25928	0.00010645	-0.051738	-2.1241E-05	0.20754	8.5207E-05	410.55226758883026	44.559	0.97924	44.634	44.333	45.312	0.07505					85	35	4	0	0	0	0.34527	1	9924	9924		13.535	6.9046	1	942720			41664	3125;3802	24016	24017	51004	51004					0.030119254915234706
RYTQDLGAF	9	Unmodified	_RYTQDLGAF_					0	0	0		ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-4|CLCN2;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.8202514648438	2	535.766906	1069.51926	0.63234	0.00033879	0.73124	0.00039177	1.3636	0.00073056	535.7673791165274	45.364	0.46429	45.364	45.121	45.586	0					25	16	2	0	0	0	0.18123	1	10142	10142		27.629	4.4804	1	228600			41665	2589	24017	24018	51005	51005					-0.012720180792257452
RYTQDLGAF	9	Unmodified	_RYTQDLGAF_					0	0	0		ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-4|CLCN2;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8197631835938	2	535.766906	1069.51926	0.61237	0.00032809	-0.048838	-2.6166E-05	0.56354	0.00030192	535.7669195074312	45.053	0.45689	45.128	44.883	45.34	0.075047					26	16	2	0	0	0	0.21538	1	10012	10012		26.268	5.8536	1	253580			41666	2589	24017	24018	51006	51006					-0.012720180792257452
RYTTEFHEL	9	Unmodified	_RYTTEFHEL_					0	0	0		ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.2911376953125	2	598.290745	1194.56694	0.64486	0.00038581	1.1927	0.00071358	1.8376	0.0010994	598.2920065106497	36.693	0.8054	36.693	36.479	37.285	0					50	28	3	0	0	0	0.19083	1	7469	7469		24.991	5.734	1	395410			41667	6085	24018	24019	51007	51007					-0.022563638790188634
RYTTEFHEL	9	Unmodified	_RYTTEFHEL_					0	0	0		ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.3826904296875	2	598.290745	1194.56694	0.63039	0.00037716	-0.097705	-5.8456E-05	0.53269	0.0003187	598.2906786618253	36.538	0.61469	36.621	36.331	36.945	0.082359					41	21	3	0	0	0	0.24924	1	7459	7459		14.405	3.5815	1	383510			41668	6085	24018	24019	51008	51008					-0.022563638790188634
RYTTEFHEL	9	Unmodified	_RYTTEFHEL_					0	0	0		ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.2908935546875	2	598.290745	1194.56694	0.83781	0.00050125	-0.78904	-0.00047207	0.048774	2.9181E-05	598.2902041216431	36.557	0.54415	36.65	36.406	36.951	0.093018					42	19	3	0	0	0	0.24247	1	7475	7475		17.443	8.6972	1	386390			41669	6085	24018	24019	51009	51009					-0.022563638790188634
RYTVGGLETF	10	Unmodified	_RYTVGGLETF_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;nc|ENSG00000111679|P29350-2|PTPN6;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7957153320312	2	571.795663	1141.57677	0.47892	0.00027384	-0.34713	-0.00019849	0.13178	7.5352E-05	571.7954940210445	53.884	0.77937	53.884	53.568	54.348	0					68	28	4	0	0	0	0.018301	1	12765	12765		85.764	59.496	1	981710			41670	10317	24019	24020	51010	51010					0.011648241263856107
RYTVGGLETF	10	Unmodified	_RYTVGGLETF_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;nc|ENSG00000111679|P29350-2|PTPN6;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2802124023438	2	571.795663	1141.57677	0.30828	0.00017627	0.042673	2.44E-05	0.35095	0.00020067	571.7957225125907	53.82	0.73277	53.877	53.56	54.293	0.056255					56	27	3	0	0	0	0.20619	1	12751	12751		51.488	27.698	1	1110700			41671	10317	24019	24020	51011	51011					0.011648241263856107
RYTVGGLETF	10	Unmodified	_RYTVGGLETF_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;nc|ENSG00000111679|P29350-2|PTPN6;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.795654296875	2	571.795663	1141.57677	0.39865	0.00022795	-0.23895	-0.00013663	0.1597	9.1318E-05	571.7955062618103	54.101	0.73476	54.086	53.787	54.522	-0.015923					64	25	4	0	0	0	0.020733	1	12825	12825		70.929	39.66	1	1199900			41672	10317	24019	24020	51012	51012					0.011648241263856107
RYVAGIEGF	9	Unmodified	_RYVAGIEGF_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2669982910156	2	506.266542	1010.51853	0.71113	0.00036002	-0.092737	-4.695E-05	0.61839	0.00031307	506.2664939508972	50.812	0.75304	50.812	50.518	51.271	0					85	27	4	0	0	0	0.014206	2	11804	11804;11854		72.968	20.7	1	1720200			41673	1403	24020	24021	51013;51014	51013					0.013691872717686238
RYVAGIEGF	9	Unmodified	_RYVAGIEGF_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2668151855469	2	506.266542	1010.51853	0.61386	0.00031077	-0.073558	-3.724E-05	0.5403	0.00027354	506.26646527442773	50.787	0.72361	50.833	50.522	51.245	0.046574					72	26	4	0	0	0	0.014206	1	11798	11798		72.968	29.11	1	1676700			41674	1403	24020	24021	51015	51015					0.013691872717686238
RYVAGIEGF	9	Unmodified	_RYVAGIEGF_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2669677734375	2	506.266542	1010.51853	0.65122	0.00032969	0.022635	1.1459E-05	0.67386	0.00034115	506.2665469157095	50.879	0.78026	50.889	50.567	51.347	0.0095673					87	29	4	0	0	0	0.037019	1	11831	11831		57.722	19.748	1	1554700			41675	1403	24020	24021	51016	51016					0.013691872717686238
RYVDQVLQL	9	Unmodified	_RYVDQVLQL_					0	0	0		IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.8207397460938	2	567.319306	1132.62406	0.38507	0.00021846	-0.1972	-0.00011188	0.18787	0.00010658	567.3195428443597	56.974	1.1593	57.052	56.778	57.938	0.078674					95	42	4	0	0	0	0.01909	1	13731	13731		65.474	19.774	1	2592700			41676	7927	24021	24022	51017	51017					0.06305103397380662
RYVDQVLQL	9	Unmodified	_RYVDQVLQL_					0	0	0		IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	567.319306	1132.62406	0.38276	0.00021715	0.21651	0.00012283	0.59927	0.00033998	567.319541507065	57.088	0.86957	57.088	56.849	57.718	0	-0.015068	0.00011695	NaN	65.474	77	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2436800			41677	7927	24021	24022							0.06305103397380662
RYVDQVLQL	9	Unmodified	_RYVDQVLQL_					0	0	0		IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	567.319306	1132.62406	0.18237	0.00010346	0.35241	0.00019993	0.53478	0.00030339	567.3198431315323	57.188	1.0098	57.169	56.809	57.819	-0.019077	0.065595	0.00027115	NaN	65.474	90	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2500100			41678	7927	24021	24022							0.06305103397380662
RYVEIVSQF	9	Unmodified	_RYVEIVSQF_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8055419921875	2	570.806031	1139.59751	0.5798	0.00033096	-0.81096	-0.0004629	-0.23115	-0.00013194	570.8054988719994	54.65	1.6413	54.65	54.322	55.963	0					164	57	5	0	0	0	0.00082904	7	12999	12956;12999;13048;13059;13101;13148;13197		124.95	58.496	1	11359000			41679	368	24022	24023	51018;51019;51020;51021;51022;51023;51024	51019					0.0332941450603812
RYVEIVSQF	9	Unmodified	_RYVEIVSQF_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8056640625	2	570.806031	1139.59751	0.5845	0.00033364	-0.7398	-0.00042228	-0.1553	-8.8648E-05	570.8055754294456	54.81	1.4384	54.794	54.389	55.827	-0.015923					151	48	5	0	0	0	0.0013864	6	13041	12998;13041;13090;13131;13184;13235		117.84	47.808	1	12485000			41680	368	24022	24023	51025;51026;51027;51028;51029;51030	51026					0.0332941450603812
RYVEIVSQF	9	Unmodified	_RYVEIVSQF_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	570.806031	1139.59751	0.64958	0.00037079	-1.0426	-0.00059512	-0.39302	-0.00022434	570.8053897496484	54.584	1.6264	54.647	54.246	55.873	0.063206	-0.049772	-0.0002019	NaN	124.95	146	60	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11441000			41681	368	24022	24023							0.0332941450603812
RYVELAWGF	9	Unmodified	_RYVELAWGF_					0	0	0		ENST00000566056.1_1_16:30959736-30965162:+|nuORF;ENSG00000175938|ENST00000318663|ORAI3	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3103637695312	2	570.795466	1139.57638	0.37479	0.00021393	-0.018609	-1.0622E-05	0.35618	0.00020331	570.7954914790492	70.207	0.70186	70.273	70.075	70.777	0.06604					51	24	3	0	0	0	0.20881	1	17768	17768		27.629	2.2295	1	326140			41682	6893	24023	24024	51031	51031					0.012174491971563839
RYVELAWGF	9	Unmodified	_RYVELAWGF_					0	0	0		ENST00000566056.1_1_16:30959736-30965162:+|nuORF;ENSG00000175938|ENST00000318663|ORAI3	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	570.795466	1139.57638	0.29129	0.00016627	0.257	0.0001467	0.54829	0.00031296	570.7958151979478	70.398	0.64337	70.373	70.047	70.69	-0.024872	0.069894	0.00014326	NaN	27.629	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338210			41683	6893	24023	24024							0.012174491971563839
RYVEQKAGITF	11	Unmodified	_RYVEQKAGITF_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2632751464844	3	437.906705	1310.69829	-0.14386	-6.2998E-05	0.010092	4.4195E-06	-0.13377	-5.8578E-05	437.90650951325057	38.386	0.58858	38.386	38.177	38.765	0					37	20	3	0	0	0	0.32649	1	8015	8015		16.838	12.722	1	271750			41684	2136	24024	24025	51032	51032					0.05536446488895308
RYVEQKAGITF	11	Unmodified	_RYVEQKAGITF_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2632751464844	3	437.906705	1310.69829	0.10506	4.6005E-05	-0.55299	-0.00024216	-0.44793	-0.00019615	437.9063610282272	38.36	0.54887	38.451	38.209	38.758	0.090881					29	19	2	0	0	0	0.30239	1	7975	7975		25.438	17.592	1	289710			41685	2136	24024	24025	51033	51033					0.05536446488895308
RYVEQKAGITF	11	Unmodified	_RYVEQKAGITF_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.2633056640625	3	437.906705	1310.69829	0.054721	2.3963E-05	-0.37095	-0.00016244	-0.31623	-0.00013848	437.9064255927569	38.29	0.52967	38.388	38.176	38.706	0.097527					40	18	3	0	0	0	0.33136	1	7991	7991		7.4291	1.6456	1	183680			41686	2136	24024	24025	51034	51034					0.05536446488895308
RYVFQSENTF	10	Unmodified	_RYVFQSENTF_					0	0	0		nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	645.8096313476562	2	645.809302	1289.60405	0.47884	0.00030924	-0.061741	-3.9873E-05	0.4171	0.00026937	645.8091893229207	49.718	0.66925	49.718	49.408	50.077	0					69	24	4	0	0	0	2.0885E-09	2	11450	11450;11510		177.58	135.62	1	1056000			41687	2155	24025	24026	51035;51036	51035					-0.029166923332468286
RYVFQSENTF	10	Unmodified	_RYVFQSENTF_					0	0	0		nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	645.8096313476562	2	645.809302	1289.60405	0.40204	0.00025964	-0.062835	-4.0579E-05	0.33921	0.00021906	645.8092593630378	49.67	0.70044	49.715	49.46	50.16	0.044891					68	26	4	0	0	0	1.1164E-13	2	11486	11439;11486		190.03	155.1	1	1294800			41688	2155	24025	24026	51037;51038	51038					-0.029166923332468286
RYVFQSENTF	10	Unmodified	_RYVFQSENTF_					0	0	0		nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	nc|ENSG00000107882|Q9UMX1-2|SUFU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	645.809326171875	2	645.809302	1289.60405	0.32976	0.00021296	0.099223	6.4079E-05	0.42898	0.00027704	645.8092400930057	49.64	0.71927	49.661	49.345	50.064	0.020691					64	26	3	0	0	0	0.00014769	2	11480	11423;11480		132.22	106.2	1	1096500			41689	2155	24025	24026	51039;51040	51040					-0.029166923332468286
RYVIGVGDAF	10	Unmodified	_RYVIGVGDAF_					0	0	0		nc|ENSG00000169896|P11215-2|ITGAM;ENSG00000169896|ENST00000544665|ITGAM;ITGAM|p.D529Tfs*2|1|0.31|ENSG00000169896|chr16:31297828-31297828|G/-|frameshift_variant	nc|ENSG00000169896|P11215-2|ITGAM	nc|ENSG00000169896|P11215-2|ITGAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7930297851562	2	548.792924	1095.57129	0.78884	0.00043291	-0.70091	-0.00038466	0.087927	4.8254E-05	548.7924222137974	54.701	0.69421	54.685	54.361	55.055	-0.015919					78	24	4	0	0	0	0.33817	1	13039	13039		14.838	0.6201	1	1035700			41690	6399	24026	24027	51041	51041					0.027331453345595946
RYVIIPTTF	9	Unmodified	_RYVIIPTTF_					0	0	0		ENST00000527129.1_1_11:76831698-76834913:+|nuORF;ENSG00000149260|ENST00000648180|CAPN5	ENST00000527129.1_1_11:76831698-76834913:+|nuORF	ENST00000527129.1_1_11:76831698-76834913:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.3214721679688	2	555.321317	1108.62808	0.54814	0.00030439	0.045083	2.5036E-05	0.59322	0.00032943	555.3212106110947	64.345	1.0225	64.345	64.053	65.076	0					99	37	4	0	0	0	0.012386	3	15994	15951;15994;16038		75.761	37.787	1	3361900			41691	4854	24027	24028	51042;51043;51044	51043					0.07811192891063001
RYVIIPTTF	9	Unmodified	_RYVIIPTTF_					0	0	0		ENST00000527129.1_1_11:76831698-76834913:+|nuORF;ENSG00000149260|ENST00000648180|CAPN5	ENST00000527129.1_1_11:76831698-76834913:+|nuORF	ENST00000527129.1_1_11:76831698-76834913:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3215942382812	2	555.321317	1108.62808	0.47382	0.00026312	0.085176	4.73E-05	0.55899	0.00031042	555.3212046177213	64.223	1.0502	64.316	64.04	65.09	0.09288					106	38	4	0	0	0	0.0059482	2	15922	15922;15964		85.642	39.621	1	3257300			41692	4854	24027	24028	51045;51046	51045					0.07811192891063001
RYVIIPTTF	9	Unmodified	_RYVIIPTTF_					0	0	0		ENST00000527129.1_1_11:76831698-76834913:+|nuORF;ENSG00000149260|ENST00000648180|CAPN5	ENST00000527129.1_1_11:76831698-76834913:+|nuORF	ENST00000527129.1_1_11:76831698-76834913:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.321533203125	2	555.321317	1108.62808	0.44515	0.0002472	0.16363	9.0869E-05	0.60878	0.00033807	555.3212593142754	64.334	1.0312	64.324	64.045	65.076	-0.0095291					102	37	4	0	0	0	0.0059482	4	15991	15943;15991;16034;16088		85.642	39.621	1	3413600			41693	4854	24027	24028	51047;51048;51049;51050	51048					0.07811192891063001
RYVLRTICQQE	11	Unmodified	_RYVLRTICQQE_					0	0	0		MED12L|p.Q2074Sfs*63|1|0.33|ENSG00000144893|chr3:151416336-151416336|C/-|frameshift_variant;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	MED12L|p.Q2074Sfs*63|1|0.33|ENSG00000144893|chr3:151416336-151416336|C/-|frameshift_variant	MED12L|p.Q2074Sfs*63|1|0.33|ENSG00000144893|chr3:151416336-151416336|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.28497314453125	3	470.250366	1407.72927	0.44322	0.00020842	-0.090111	-4.2375E-05	0.35311	0.00016605	470.5846329062377	48.406	0.65652	48.449	47.987	48.643	0.04332					48	24	3	0	0	0	0.3331	1	11027	11027		2.2527	2.2527	1	408920			41694	12524	24028	24029	51051	51051					0.04171276531496915
RYVLYPNNF	9	Unmodified	_RYVLYPNNF_					0	0	0		ENST00000563908.1_1_15:72647792-72668286:-|nuORF;ENSG00000213614|ENST00000268097|HEXA	ENST00000563908.1_1_15:72647792-72668286:-|nuORF	ENST00000563908.1_1_15:72647792-72668286:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.3070678710938	2	593.306198	1184.59784	0.81013	0.00048066	0.045266	2.6856E-05	0.8554	0.00050751	593.3061376265157	54.923	0.74732	54.923	54.626	55.374	0					72	27	4	0	0	0	0.014888	3	13044	13044;13090;13142		71.922	71.922	1	2926800			41695	8355	24029	24030	51052;51053;51054	51052					0.012928342258874181
RYVLYPNNF	9	Unmodified	_RYVLYPNNF_					0	0	0		ENST00000563908.1_1_15:72647792-72668286:-|nuORF;ENSG00000213614|ENST00000268097|HEXA	ENST00000563908.1_1_15:72647792-72668286:-|nuORF	ENST00000563908.1_1_15:72647792-72668286:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.3070678710938	2	593.306198	1184.59784	0.74124	0.00043978	-0.1629	-9.665E-05	0.57834	0.00034313	593.3060373528566	54.849	0.85084	54.912	54.642	55.493	0.063206					76	31	4	0	0	0	0.0037772	2	13020	13020;13076		96.111	96.111	1	3847000			41696	8355	24029	24030	51055;51056	51055					0.012928342258874181
RYVLYPNNF	9	Unmodified	_RYVLYPNNF_					0	0	0		ENST00000563908.1_1_15:72647792-72668286:-|nuORF;ENSG00000213614|ENST00000268097|HEXA	ENST00000563908.1_1_15:72647792-72668286:-|nuORF	ENST00000563908.1_1_15:72647792-72668286:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.3070068359375	2	593.306198	1184.59784	0.67787	0.00040218	0.34375	0.00020395	1.0216	0.00060613	593.3062767807148	55.077	0.85268	55.058	54.818	55.671	-0.019081					79	31	4	0	0	0	0.010453	1	13151	13151		78.728	63.89	1	3414900			41697	8355	24029	24030	51057	51057					0.012928342258874181
RYVPRASYF	9	Unmodified	_RYVPRASYF_					0	0	0		ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3;ENSG00000112576|ENST00000372991|CCND3	ENST00000510058.1_1_6:41904922-41909441:-|nuORF	ENST00000510058.1_1_6:41904922-41909441:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.806396484375	2	579.806365	1157.59818	0.36676	0.00021265	-0.20065	-0.00011634	0.16611	9.631E-05	579.8062322395568	37.506	1.7504	37.593	37.218	38.968	0.08741					180	63	5	0	0	0	0.0016361	1	7721	7721		114.65	84.013	1	8030200			41698	2442	24030	24031	51058	51058					0.025682539457420717
RYVPRASYF	9	Unmodified	_RYVPRASYF_					0	0	0		ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3;ENSG00000112576|ENST00000372991|CCND3	ENST00000510058.1_1_6:41904922-41909441:-|nuORF	ENST00000510058.1_1_6:41904922-41909441:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8065185546875	2	579.806365	1157.59818	0.30311	0.00017575	-0.10645	-6.1722E-05	0.19666	0.00011402	579.8063236189627	37.452	1.7769	37.545	37.17	38.947	0.093014					172	64	5	0	0	0	0.0023784	2	7720	7670;7720		107.19	78.105	1	8000100			41699	2442	24030	24031	51059;51060	51060					0.025682539457420717
RYVQQLQRL	9	Unmodified	_RYVQQLQRL_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.3316040039062	2	602.351471	1202.68839	-0.17531	-0.0001056	0.488	0.00029395	0.31269	0.00018835	602.3517158001973	34.447	0.56048	34.447	34.164	34.725	0					45	19	4	0	0	0	0.0083926	2	6782	6782;6832		81.89	41.933	1	614090			41700	708	24031	24032	51061;51062	51061					0.09515303274179132
RYVQQLQRL	9	Unmodified	_RYVQQLQRL_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.3316650390625	2	602.351471	1202.68839	-0.057117	-3.4405E-05	0.073738	4.4416E-05	0.016621	1.0011E-05	602.3514017605098	34.288	0.61163	34.354	34.092	34.704	0.06636					51	21	3	0	0	0	0.0018995	3	6740	6725;6740;6783		111.29	69.192	1	597720			41701	708	24031	24032	51063;51064;51065	51064					0.09515303274179132
RYVQQLQRL	9	Unmodified	_RYVQQLQRL_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.33154296875	2	602.351471	1202.68839	0.10011	6.0303E-05	-0.0013977	-8.419E-07	0.098715	5.9461E-05	602.3514054664781	34.265	0.56149	34.332	34.071	34.633	0.0667					51	19	3	0	0	0	0.01083	3	6730	6706;6730;6778		78.149	51.138	1	638100			41702	708	24031	24032	51066;51067;51068	51067					0.09515303274179132
RYVRKFVLM	9	Oxidation (M)	_RYVRKFVLM(Oxidation (M))_		RYVRKFVLM(1)		RYVRKFVLM(48)	0	0	1		ENST00000597209.1_1_19:59063514-59065579:-|nuORF;ENSG00000130724|ENST00000312547|CHMP2A	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.90643310546875	3	409.905871	1226.69578	-0.10945	-4.4865E-05	0.12658	5.1887E-05	0.01713	7.0217E-06	409.90600762561604	30.806	2.478	30.806	30.333	32.811	0					231	88	5	0	0	0	0.064268	3	5679	5679;5722;5766		47.594	31.029	1	11228000			41703	3504	24032	24033	51069;51070;51071	51069		443			0.09150319550235508
RYVRKFVLM	9	Oxidation (M)	_RYVRKFVLM(Oxidation (M))_		RYVRKFVLM(1)		RYVRKFVLM(48)	0	0	1		ENST00000597209.1_1_19:59063514-59065579:-|nuORF;ENSG00000130724|ENST00000312547|CHMP2A	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9063415527344	3	409.905871	1226.69578	-0.017911	-7.3418E-06	0.099204	4.0664E-05	0.081293	3.3322E-05	409.9059669635887	30.848	2.1808	30.876	30.354	32.534	0.027946					214	77	5	0	0	0	0.064268	1	5732	5732		47.594	30.152	1	11174000			41704	3504	24032	24033	51072	51072		443			0.09150319550235508
RYVRKFVLM	9	Oxidation (M)	_RYVRKFVLM(Oxidation (M))_		RYVRKFVLM(1)		RYVRKFVLM(48)	0	0	1		ENST00000597209.1_1_19:59063514-59065579:-|nuORF;ENSG00000130724|ENST00000312547|CHMP2A	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.9060363769531	3	409.905871	1226.69578	-0.042751	-1.7524E-05	0.3255	0.00013342	0.28275	0.0001159	409.9062013649808	30.84	1.4049	30.867	30.53	31.935	0.027157					192	50	6	0	0	0	0.064268	2	5744	5694;5744		47.594	34.722	1	12510000			41705	3504	24032	24033	51073;51074	51074		443			0.09150319550235508
RYVRRLDFF	9	Unmodified	_RYVRRLDFF_					0	0	0		nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.5714416503906	3	424.571768	1270.69348	-0.013487	-5.7261E-06	-0.53772	-0.0002283	-0.55121	-0.00023403	424.5716160176205	43.51	1.8076	43.587	43.263	45.071	0.077515					155	66	3	0	0	0	0.073988	4	9621	9518;9569;9621;9674		43.982	22.445	1	9454500			41706	3704	24033	24034	51075;51076;51077;51078	51077					0.06895607136789295
RYVRRLDFF	9	Unmodified	_RYVRRLDFF_					0	0	0		nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.3543090820312	2	636.354014	1270.69348	0.6329	0.00040275	-0.09735	-6.1949E-05	0.53555	0.0003408	636.353963913288	43.533	0.60049	43.611	43.319	43.92	0.077518					45	21	3	0	0	0	0.059067	1	9559	9559		45.7	27.553	1	631250			41707	3704	24033	24034	51079	51079					0.06895607136789295
RYVRRLDFF	9	Unmodified	_RYVRRLDFF_					0	0	0		nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.5716857910156	3	424.571768	1270.69348	0.04949	2.1012E-05	-0.61722	-0.00026205	-0.56773	-0.00024104	424.5715769567411	43.561	1.9248	43.645	43.241	45.166	0.083996					174	70	3	0	0	0	0.01251	3	9561	9512;9561;9613		75.571	54.034	1	8820700			41708	3704	24033	24034	51080;51081;51082	51081					0.06895607136789295
RYVRRLDFF	9	Unmodified	_RYVRRLDFF_					0	0	0		nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.354248046875	2	636.354014	1270.69348	0.68851	0.00043813	-0.22054	-0.00014034	0.46797	0.00029779	636.3538705083602	43.56	0.58508	43.644	43.41	43.995	0.083996					48	21	3	0	0	0	0.20679	1	9591	9591		18.146	10.537	1	727870			41709	3704	24033	24034	51083	51083					0.06895607136789295
RYVRRLDFF	9	Unmodified	_RYVRRLDFF_					0	0	0		nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	636.354014	1270.69348	0.26738	0.00017015	0.2066	0.00013147	0.47398	0.00030162	636.3540909640486	43.954	0.54272	43.954	43.713	44.255	0	0.21752	0.00030143	NaN	45.7	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	675840			41710	3704	24033	24034							0.06895607136789295
RYVSGSLHYF	10	Unmodified	_RYVSGSLHYF_					0	0	0		ENST00000467548.1_1_2:220107868-220108295:-|nuORF;nc|ENSG00000163521|Q6UWU2-2|GLB1L;ENSG00000163521|ENST00000295759|GLB1L	ENST00000467548.1_1_2:220107868-220108295:-|nuORF	ENST00000467548.1_1_2:220107868-220108295:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2088928222656	3	410.208495	1227.60366	0.086375	3.5432E-05	0.55688	0.00022844	0.64326	0.00026387	410.20877037639735	32.614	1.5222	32.668	32.072	33.594	0.054375					122	54	4	0	0	0	0.37568	1	6368	6368		7.9454	0	1	354800			41711	5695	24034	24035	51084	51084					-0.001040672624412764
RYVTTFDFF	9	Unmodified	_RYVTTFDFF_					0	0	0		nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-5|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;nc|ENSG00000118762|Q13563-2|PKD2	nc|ENSG00000118762|Q13563-4|PKD2	nc|ENSG00000118762|Q13563-4|PKD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.2930297851562	2	598.292756	1194.57096	0.55651	0.00033296	-0.12594	-7.535E-05	0.43057	0.00025761	598.2927230922966	72.262	1.3142	72.262	71.937	73.251	0					101	47	3	0	0	0	0.0028542	2	18387	18387;18435		103.42	87.27	1	2381000			41712	2843	24035	24036	51085;51086	51085					-0.01854274385300414
RYVTTFDFF	9	Unmodified	_RYVTTFDFF_					0	0	0		nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-5|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;nc|ENSG00000118762|Q13563-2|PKD2	nc|ENSG00000118762|Q13563-4|PKD2	nc|ENSG00000118762|Q13563-4|PKD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.29296875	2	598.292756	1194.57096	0.66131	0.00039566	-0.10904	-6.5238E-05	0.55227	0.00033042	598.2926381771903	72.214	1.1971	72.271	71.949	73.147	0.056572					73	43	2	0	0	0	0.0016712	2	18366	18366;18412		114.2	98.354	1	2702800			41713	2843	24035	24036	51087;51088	51087					-0.01854274385300414
RYVTTFDFF	9	Unmodified	_RYVTTFDFF_					0	0	0		nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-5|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;nc|ENSG00000118762|Q13563-2|PKD2	nc|ENSG00000118762|Q13563-4|PKD2	nc|ENSG00000118762|Q13563-4|PKD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.2928466796875	2	598.292756	1194.57096	0.49809	0.00029801	-0.00081495	-4.8758E-07	0.49728	0.00029752	598.292778206372	72.337	1.232	72.31	72.009	73.241	-0.027267					96	43	3	0	0	0	0.0028542	2	18399	18399;18445		103.42	81.882	1	3342600			41714	2843	24035	24036	51089;51090	51089					-0.01854274385300414
RYWFYSVASSG	11	Unmodified	_RYWFYSVASSG_					0	0	0			REV__ENSG00000164363|ENST00000324642|SLC6A18	REV__ENSG00000164363|ENST00000324642|SLC6A18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.74322509765625	3	441.543655	1321.60914	-0.2438	-0.00010765	0.03675	1.6227E-05	-0.20705	-9.1423E-05	441.5435822262429	12.857	0.20733	12.79	12.671	12.878	-0.067495					17	6	3	0	0	0	0.33346	1	275	275		0.50596	0	1	60419	+		41715	17154	24036	24037	51091	51091					-0.03880388470611251
RYYGNISRF	9	Unmodified	_RYYGNISRF_					0	0	0		ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2;ENST00000461880.5_1_6:31847863-31852380:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF	ENST00000480912.5_1_6:31847863-31860642:-|nuORF	ENST00000480912.5_1_6:31847863-31860642:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3017578125	2	588.301447	1174.58834	0.26318	0.00015483	0.46403	0.00027299	0.72721	0.00042782	588.301650318509	35.547	0.65585	35.547	35.251	35.907	0					50	23	3	0	0	0	0.0098873	2	7129	7082;7129		79.596	59.143	1	805630			41716	8220	24037	24038	51092;51093	51093					0.008030659403630125
RYYGNISRF	9	Unmodified	_RYYGNISRF_					0	0	0		ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2;ENST00000461880.5_1_6:31847863-31852380:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF	ENST00000480912.5_1_6:31847863-31860642:-|nuORF	ENST00000480912.5_1_6:31847863-31860642:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.3016967773438	2	588.301447	1174.58834	0.24227	0.00014253	0.20355	0.00011975	0.44582	0.00026227	588.3016415978664	35.448	0.68622	35.524	35.261	35.947	0.075306					54	24	3	0	0	0	0.035405	1	7089	7089		79.596	52.713	1	728600			41717	8220	24037	24038	51094	51094					0.008030659403630125
RYYGNISRF	9	Unmodified	_RYYGNISRF_					0	0	0		ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2;ENST00000461880.5_1_6:31847863-31852380:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF	ENST00000480912.5_1_6:31847863-31860642:-|nuORF	ENST00000480912.5_1_6:31847863-31860642:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.3018798828125	2	588.301447	1174.58834	-0.085267	-5.0163E-05	0.32767	0.00019277	0.24241	0.00014261	588.3017403878029	35.39	0.80137	35.467	35.224	36.026	0.077377					57	28	3	0	0	0	0.01909	1	7070	7070		65.474	45.02	1	939810			41718	8220	24037	24038	51095	51095					0.008030659403630125
RYYINPRYL	9	Unmodified	_RYYINPRYL_					0	0	0		ENST00000535357.5_1_12:19283009-19360212:+|nuORF	ENST00000535357.5_1_12:19283009-19360212:+|nuORF	ENST00000535357.5_1_12:19283009-19360212:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.341064453125	2	629.340572	1256.66659	-0.0034887	-2.1956E-06	-0.14247	-8.9665E-05	-0.14596	-9.1861E-05	629.3404843726528	45.782	0.47359	45.842	45.677	46.15	0.059837					23	16	2	0	0	0	0.051692	1	10304	10304		52.268	33.895	1	392420			41719	11671	24038	24039	51096	51096					0.048524985256108266
RYYINPRYL	9	Unmodified	_RYYINPRYL_					0	0	0		ENST00000535357.5_1_12:19283009-19360212:+|nuORF	ENST00000535357.5_1_12:19283009-19360212:+|nuORF	ENST00000535357.5_1_12:19283009-19360212:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.8423461914062	2	629.340572	1256.66659	0.48383	0.00030449	-0.75914	-0.00047776	-0.27531	-0.00017327	629.3400265293027	45.849	0.52662	45.914	45.647	46.174	0.065048					28	18	2	0	0	0	0.015402	1	10286	10286		71.134	52.76	1	256120			41720	11671	24038	24039	51097	51097					0.048524985256108266
RYYINPRYL	9	Unmodified	_RYYINPRYL_					0	0	0		ENST00000535357.5_1_12:19283009-19360212:+|nuORF	ENST00000535357.5_1_12:19283009-19360212:+|nuORF	ENST00000535357.5_1_12:19283009-19360212:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	629.340572	1256.66659	0.29589	0.00018622	-0.65869	-0.00041454	-0.3628	-0.00022833	629.3401864274343	46.191	0.40709	46.191	45.917	46.324	0	0.20878	-0.00011486	NaN	71.134	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341720			41721	11671	24038	24039							0.048524985256108266
RYYLRKDSL	9	Unmodified	_RYYLRKDSL_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2278137207031	3	405.227779	1212.66151	-0.038123	-1.5449E-05	0.2118	8.5825E-05	0.17367	7.0377E-05	405.2277743795494	44.877	0.63712	44.946	44.682	45.319	0.068569					51	22	3	0	0	0	0.23612	1	9987	9987		18.373	0.50992	1	793270			41722	845	24039	24040	51098	51098					0.063681946629913
RYYLRKDSL	9	Unmodified	_RYYLRKDSL_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	405.227779	1212.66151	0.0073922	2.9955E-06	0.21101	8.5508E-05	0.2184	8.8503E-05	405.22776874215964	45.117	0.64902	45.117	44.909	45.558	0	0.10423	2.1591E-05	NaN	18.373	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	706460			41723	845	24039	24040							0.063681946629913
RYYLRKDSL	9	Unmodified	_RYYLRKDSL_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	405.227779	1212.66151	-0.038123	-1.5449E-05	0.2118	8.5825E-05	0.17367	7.0377E-05	405.2277743795494	44.877	0.63712	44.946	44.682	45.319	0.068569	-0.067288	2.2544E-05	NaN	18.373	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	793270			41724	845	24039	24040							0.063681946629913
RYYLRKDSL	9	Unmodified	_RYYLRKDSL_					0	0	0		ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	ENSG00000066739|ENST00000359933|ATG2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.227779	1212.66151	0.088397	3.5821E-05	0.13675	5.5415E-05	0.22515	9.1236E-05	405.22767742500736	44.901	0.56339	44.976	44.749	45.312	0.075047	-0.036944	-6.8686E-05	NaN	18.373	57	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	786200			41725	845	24039	24040							0.063681946629913
RYYWRGPE	8	Unmodified	_RYYWRGPE_					0	0	0		ENSG00000166106|ENST00000299164|ADAMTS15	ENSG00000166106|ENST00000299164|ADAMTS15	ENSG00000166106|ENST00000299164|ADAMTS15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.7754516601562	2	563.775065	1125.53558	0.17302	9.7544E-05	1.4472	0.00081592	1.6203	0.00091346	563.7756687761868	26.537	0.62919	26.537	26.296	26.925	0					45	21	3	0	0	0	0.46092	1	4374	4374		2.0598	0	1	180420			41726	6029	24040	24041	51099	51099					-0.022168921224192673
SAAAALVLK	9	Unmodified	_SAAAALVLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2683410644531	2	422.268553	842.522553	0.29178	0.00012321	-0.50047	-0.00021133	-0.2087	-8.8127E-05	422.26821571346846	37.135	1.0508	37.135	36.844	37.895	0					83	37	3	0	0	0	0.0010463	1	7614	7614		122.18	56.944	1	1507800			41727	4024	24041	24042	51100	51100					0.09499276765473041
SAAAALVLK	9	Unmodified	_SAAAALVLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.2682800292969	2	422.268553	842.522553	0.061934	2.6153E-05	-0.35176	-0.00014854	-0.28983	-0.00012238	422.2682781199266	36.989	0.78802	37.076	36.79	37.578	0.087406					79	28	4	0	0	0	6.6118E-05	1	7582	7582		147.06	84.486	1	1565800			41728	4024	24041	24042	51101	51101					0.09499276765473041
SAAAALVLK	9	Unmodified	_SAAAALVLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.26824951171875	2	422.268553	842.522553	0.2755	0.00011633	-0.52083	-0.00021993	-0.24533	-0.0001036	422.2682058770148	36.977	0.91714	37.07	36.79	37.707	0.093018					71	33	3	0	0	0	0.0010463	1	7564	7564		122.18	56.944	1	1612700			41729	4024	24041	24042	51102	51102					0.09499276765473041
SAAAATAELLK	11	Unmodified	_SAAAATAELLK_					0	0	0		ENST00000462151.5_1_1:155228612-155231516:-|nuORF;ENST00000465312.5_1_1:155227300-155231996:-|nuORF;ENST00000490999.5_1_1:155226066-155230310:-|nuORF;nc|ENSG00000116521|O14828-2|SCAMP3;ENSG00000116521|ENST00000302631|SCAMP3	ENST00000462151.5_1_1:155228612-155231516:-|nuORF	ENST00000462151.5_1_1:155228612-155231516:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8187866210938	2	523.298039	1044.58152	0.30616	0.00016021	-0.078249	-4.0948E-05	0.22791	0.00011927	523.298127436847	39.929	0.21934	39.929	39.831	40.05	0					11	7	2	0	0	0	0.097673	1	8476	8476		77.049	43.604	1	211170			41730	2729	24042	24043	51103	51103					0.061017082691250835
SAAALLICL	9	Unmodified	_SAAALLICL_					0	0	0		ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.2103576660156	2	437.756964	873.499375	-0.38057	-0.0001666	-1.0641	-0.00046581	-1.4447	-0.00063241	437.75630738208235	25.211	0.69572	25.18	24.765	25.461	-0.031408					37	23	2	0	0	0	0.24311	1	3902	3902		11.64	0	1	160200			41731	6563	24043	24044	51104	51104					0.05756514656491163
SAAAVRRSL	9	Unmodified	_SAAAVRRSL_					0	0	0		ENST00000485748.5_1_1:1420203-1425183:+|nuORF	ENST00000485748.5_1_1:1420203-1425183:+|nuORF	ENST00000485748.5_1_1:1420203-1425183:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7774353027344	2	465.777608	929.540663	0.14808	6.8973E-05	-0.19059	-8.8772E-05	-0.042506	-1.9798E-05	465.7773889648621	69.509	2.264	69.487	68.595	70.859	-0.022079					157	81	3	0	0	0	0.29638	1	17640	17640		9.3831	9.3831	1	439530			41732	11095	24044	24045	51105	51105					0.07307411740191583
SAAIGPSLR	9	Unmodified	_SAAIGPSLR_					0	0	0		ENST00000434411.5_1_17:75084768-75084960:+|nuORF	ENST00000434411.5_1_17:75084768-75084960:+|nuORF	ENST00000434411.5_1_17:75084768-75084960:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2616882324219	2	436.253434	870.492316	-0.030811	-1.3441E-05	0.081303	3.5469E-05	0.050492	2.2027E-05	436.2534798232521	32.875	0.39934	32.875	32.692	33.091	0					27	13	3	0	0	0	0.22215	1	6331	6331		20.415	0	1	163330			41733	10498	24045	24046	51106	51106					0.05188918100293449
SAAIWPFRFGY	11	Unmodified	_SAAIWPFRFGY_					0	0	0		ENSG00000109182|ENST00000226432|CWH43	ENSG00000109182|ENST00000226432|CWH43	ENSG00000109182|ENST00000226432|CWH43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.7461853027344	3	438.892507	1313.65569	0.12667	5.5594E-05	-2.4001	-0.0010534	-2.2735	-0.00099781	438.89113446829083	37.704	0.10293	37.795	37.718	37.821	0.090881					5	3	2	0	0	0	0.3322	1	7797	7797		1.2148	0.51716	1	24865			41734	2242	24046	24047	51107	51107					0.011410961513320217
SAAKSLLNK	9	Unmodified	_SAAKSLLNK_					0	0	0		ENST00000492020.5_1_10:75597207-75607060:-|nuORF;ENST00000474131.5_1_10:75577276-75601951:-|nuORF;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000148660|Q13555-3|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	ENST00000492020.5_1_10:75597207-75607060:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2821350097656	2	466.282192	930.549831	-0.16333	-7.6158E-05	0.20017	9.3333E-05	0.036834	1.7175E-05	466.2823361591982	17.454	0.8009	17.337	16.772	17.573	-0.11739					53	28	2	0	0	0	0.28225	1	1635	1635		11.495	2.1116	1	88238			41735	10915	24047	24048	51108	51108					0.08177760305852644
SAAKTFITK	9	Unmodified	_SAAKTFITK_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENSG00000146247|ENST00000275034|PHIP;ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENSG00000146247|ENST00000275034|PHIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7845153808594	2	483.784567	965.554582	0.028991	1.4025E-05	-0.11739	-5.679E-05	-0.088396	-4.2765E-05	483.784475743861	19.339	0.75659	19.339	19.066	19.822	0					62	26	3	0	0	0	0.12765	2	2194	2194;2255		34.222	10.432	1	151050			41736	4702;10989	24048	24049	51109;51110	51109					0.07042644448597457
SAAKTFITK	9	Unmodified	_SAAKTFITK_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENSG00000146247|ENST00000275034|PHIP;ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENSG00000146247|ENST00000275034|PHIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7845153808594	2	483.784567	965.554582	0.17464	8.4486E-05	-0.25905	-0.00012532	-0.084413	-4.0838E-05	483.78439628650017	19.533	0.72335	19.417	19.145	19.869	-0.11592					39	24	2	0	0	0	0.10335	1	2273	2273		37.771	19.398	1	145950			41737	4702;10989	24048	24049	51111	51111					0.07042644448597457
SAAKTFITK	9	Unmodified	_SAAKTFITK_					0	0	0		ENSG00000146247|ENST00000275034|PHIP;ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENSG00000146247|ENST00000275034|PHIP;ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENSG00000146247|ENST00000275034|PHIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.78448486328125	2	483.784567	965.554582	0.24544	0.00011874	-0.1192	-5.7668E-05	0.12624	6.1072E-05	483.7844338512791	19.478	0.70164	19.422	19.114	19.816	-0.055693					54	24	3	0	0	0	0.12765	2	2220	2220;2284		34.222	13.807	1	137950			41738	4702;10989	24048	24049	51112;51113	51112					0.07042644448597457
SAALANITF	9	Unmodified	_SAALANITF_					0	0	0		nc|ENSG00000188487|Q1MX18-3|INSC;ENST00000447214.6_1_11:15209769-15267583:+|nuORF;nc|ENSG00000188487|Q1MX18-4|INSC;nc|ENSG00000188487|Q1MX18-6|INSC;ENSG00000188487|ENST00000379556|INSC;nc|ENSG00000188487|Q1MX18-5|INSC;nc|ENSG00000188487|Q1MX18|INSC	nc|ENSG00000188487|Q1MX18-3|INSC	nc|ENSG00000188487|Q1MX18-3|INSC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2480163574219	2	454.247818	906.481082	0.042031	1.9092E-05	0.2873	0.0001305	0.32933	0.0001496	454.24789352028733	27.236	1.0041	27.236	26.759	27.763	0					52	34	2	0	0	0	0.12642	1	4573	4573		34.402	3.1334	1	391110			41739	7752	24049	24050	51114	51114					0.024100960061218757
SAALPYASK	9	Unmodified	_SAALPYASK_					0	0	0			REV__ENST00000359205.9_1_1:155657965-155658551:-|nuORF	REV__ENST00000359205.9_1_1:155657965-155658551:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.24786376953125	2	454.247818	906.481082	0.024907	1.1314E-05	0.32094	0.00014578	0.34584	0.0001571	454.24787167610225	27.245	0.78438	27.224	26.709	27.493	-0.021412					47	27	2	0	0	0	0.07944	1	4591	4591		41.956	0	1	419910	+		41740	20241	24050	24051	51115	51115					0.024100960061332444
SAALPYASK	9	Unmodified	_SAALPYASK_					0	0	0			REV__ENST00000359205.9_1_1:155657965-155658551:-|nuORF	REV__ENST00000359205.9_1_1:155657965-155658551:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	454.247818	906.481082	0.024907	1.1314E-05	0.32094	0.00014578	0.34584	0.0001571	454.24787167610225	27.245	0.78438	27.224	26.709	27.493	-0.021412	-0.0061884	2.1236E-05	NaN	41.956	47	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419910	+		41741	20241	24050	24051							0.024100960061332444
SAALRWEEKK	10	Unmodified	_SAALRWEEKK_					0	0	0		ENSG00000206113|ENST00000635017|CFAP99	ENSG00000206113|ENST00000635017|CFAP99	ENSG00000206113|ENST00000635017|CFAP99	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.20062255859375	3	406.559417	1216.65642	-0.35891	-0.00014592	-4.2428	-0.0017249	-4.6017	-0.0018708	406.55778728799703	14.456	0.30353	14.351	14.185	14.489	-0.10466					15	9	2	0	0	0	0.31746	1	719	719		9.544	2.9205	1	39161			41742	8314	24051	24052	51116	51116					0.05675890800353045
SAALVAPSR	9	Unmodified	_SAALVAPSR_					0	0	0		ENST00000456318.5_2_3:184081200-184081314:+|nuORF	ENST00000456318.5_2_3:184081200-184081314:+|nuORF	ENST00000456318.5_2_3:184081200-184081314:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.261474609375	2	436.253434	870.492316	-0.020262	-8.8391E-06	-0.079049	-3.4485E-05	-0.09931	-4.3325E-05	436.2533738625851	32.764	0.48991	32.819	32.553	33.042	0.054371					23	17	2	0	0	0	0.18208	1	6303	6303		26.268	0	1	144920			41743	10696	24052	24053	51117	51117					0.051889181002820806
SAALVAPSR	9	Unmodified	_SAALVAPSR_					0	0	0		ENST00000456318.5_2_3:184081200-184081314:+|nuORF	ENST00000456318.5_2_3:184081200-184081314:+|nuORF	ENST00000456318.5_2_3:184081200-184081314:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	436.253434	870.492316	0.059784	2.6081E-05	-0.21704	-9.4683E-05	-0.15725	-6.8602E-05	436.25318684451685	32.839	0.35672	32.895	32.645	33.002	0.055309	0.031772	-0.00013335	NaN	26.268	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139970			41744	10696	24052	24053							0.051889181002820806
SAAPISARVVT	11	Unmodified	_SAAPISARVVT_					0	0	0		ENSG00000233436|ENST00000422652|BTBD18	ENSG00000233436|ENST00000422652|BTBD18	ENSG00000233436|ENST00000422652|BTBD18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.3111572265625	2	536.31148	1070.60841	0.603	0.00032339	-0.65206	-0.0003497	-0.04906	-2.6311E-05	536.311226173545	31.984	0.72936	31.984	31.8	32.529	0					44	25	2	0	0	0	0.37585	1	6102	6102		14.405	1.5328	1	749960			41745	8480	24053	24054	51118	51118					0.07592816880332975
SAARAPRPRSS	11	Unmodified	_SAARAPRPRSS_					0	0	0		ENST00000445369.2_1_16:3063604-3064486:+|nuORF	ENST00000445369.2_1_16:3063604-3064486:+|nuORF	ENST00000445369.2_1_16:3063604-3064486:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3212280273438	2	578.320703	1154.62685	0.38905	0.00022499	0.414	0.00023942	0.80304	0.00046442	578.320734328455	82.219	2.6522	82.219	81.302	83.954	0					240	103	3	0	0	0	0.45108	1	21497	21497		4.5289	1.2476	1	835630			41746	10585	24054	24055	51119	51119					0.055723715748854374
SAAVAKCLGR	10	Unmodified	_SAAVAKCLGR_					0	0	0			REV__ENSG00000119943|ENST00000370575|PYROXD2	REV__ENSG00000119943|ENST00000370575|PYROXD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2589111328125	2	488.273844	974.533135	0.15811	7.72E-05	0.52044	0.00025412	0.67855	0.00033132	488.27407657530364	16.318	0.83195	16.318	15.947	16.779	0					67	28	3	0	0	0	0.33817	1	1383	1383		14.838	4.0143	1	370490	+		41747	15066	24055	24056	51120	51120					0.044849361482420136
SAAVAKCLGR	10	Unmodified	_SAAVAKCLGR_					0	0	0			REV__ENSG00000119943|ENST00000370575|PYROXD2	REV__ENSG00000119943|ENST00000370575|PYROXD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2590637207031	2	488.273844	974.533135	0.089225	4.3566E-05	0.51069	0.00024936	0.59992	0.00029293	488.2741349064791	16.455	0.78852	16.341	15.987	16.775	-0.11434					71	27	4	0	0	0	0.33817	2	1406	1406;1448		14.838	6.245	1	410830	+		41748	15066	24055	24056	51121;51122	51121					0.044849361482420136
SAAVAKCLGR	10	Unmodified	_SAAVAKCLGR_					0	0	0			REV__ENSG00000119943|ENST00000370575|PYROXD2	REV__ENSG00000119943|ENST00000370575|PYROXD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.25897216796875	2	488.273844	974.533135	0.24401	0.00011915	0.5283	0.00025796	0.77232	0.0003771	488.2740859099105	16.376	0.91566	16.314	15.892	16.808	-0.062532					72	31	3	0	0	0	0.33817	1	1405	1405		14.838	3.198	1	397620	+		41749	15066	24055	24056	51123	51123					0.044849361482420136
SAAVATIKSK	10	Unmodified	_SAAVATIKSK_					0	0	0		ENST00000422086.5_2_22:21362941-21363382:-|nuORF;ENST00000442739.1_1_22:21357241-21363382:-|nuORF	ENST00000422086.5_2_22:21362941-21363382:-|nuORF	ENST00000422086.5_2_22:21362941-21363382:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2590637207031	2	488.295299	974.576045	0.089608	4.3755E-05	-0.14932	-7.2912E-05	-0.059712	-2.9157E-05	488.2952572278457	16.513	0.36388	16.399	16.247	16.611	-0.11434					19	12	2	0	0	0	0.31039	1	1406	1406		18.146	12.414	1	59321			41750	10377	24056	24057	51124	51124					0.08774029477331169
SAAVATIKSK	10	Unmodified	_SAAVATIKSK_					0	0	0		ENST00000422086.5_2_22:21362941-21363382:-|nuORF;ENST00000442739.1_1_22:21357241-21363382:-|nuORF	ENST00000422086.5_2_22:21362941-21363382:-|nuORF	ENST00000422086.5_2_22:21362941-21363382:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2593994140625	2	488.295299	974.576045	0.26859	0.00013115	-0.22161	-0.00010821	0.046981	2.294E-05	488.29510784120185	16.51	0.35175	16.447	16.266	16.617	-0.062534					22	11	3	0	0	0	0.31039	1	1353	1353		18.146	9.5531	1	63811			41751	10377	24056	24057	51125	51125					0.08774029477331169
SAAVNVEEGT	10	Unmodified	_SAAVNVEEGT_					0	0	0		ENSG00000136874|ENST00000259400|STX17	ENSG00000136874|ENST00000259400|STX17	ENSG00000136874|ENST00000259400|STX17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.25897216796875	2	488.732729	975.450904	0.28432	0.00013896	-4.357	-0.0021294	-4.0727	-0.0019905	488.7314897529333	16.609	0.55587	16.546	16.147	16.703	-0.062534					24	18	3	0	0	0	0.31039	1	1405	1405		18.146	3.3081	1	43739			41752	4008	24057	24058	51126	51126					-0.03780307449699194
SAAVVHTIV	9	Unmodified	_SAAVVHTIV_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.I1710*|1|0.31|ENSG00000023516|chr13:42308462-42308462|A/-|frameshift_variant	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.750732421875	2	448.763635	895.512717	0.05222	2.3434E-05	-0.37093	-0.00016646	-0.31871	-0.00014303	448.763409255184	22.445	0.51253	22.445	22.278	22.791	0					31	17	3	0	0	0	0.28674	1	3195	3195		10.824	2.0785	1	52119			41753	24	24058	24059	51127	51127					0.060780887601026734
SAAVVHTIV	9	Unmodified	_SAAVVHTIV_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.I1710*|1|0.31|ENSG00000023516|chr13:42308462-42308462|A/-|frameshift_variant	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7511291503906	2	448.763635	895.512717	0.04176	1.874E-05	-0.30138	-0.00013525	-0.25962	-0.00011651	448.7634068849576	22.596	0.47008	22.551	22.347	22.817	-0.044867					24	15	2	0	0	0	0.31038	1	3224	3224		7.2892	1.9923	1	68857			41754	24	24058	24059	51128	51128					0.060780887601026734
SAAVVHTIV	9	Unmodified	_SAAVVHTIV_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.I1710*|1|0.31|ENSG00000023516|chr13:42308462-42308462|A/-|frameshift_variant	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	448.763635	895.512717	0.01368	6.1393E-06	-0.55453	-0.00024885	-0.54085	-0.00024271	448.76333913549865	22.606	0.41465	22.519	22.296	22.711	-0.087608	0.01372	-0.00017421	NaN	10.824	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74569			41755	24	24058	24059							0.060780887601026734
SACMKNVSHDK	11	Unmodified	_SACMKNVSHDK_					0	0	0			REV__nc|ENSG00000176956|O94772|LY6H	REV__nc|ENSG00000176956|O94772|LY6H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2034912109375	3	407.190119	1218.54853	-0.15235	-6.2033E-05	-3.1496	-0.0012825	-3.3019	-0.0013445	407.18947222987833	17.868	0.72472	17.807	17.472	18.197	-0.060429					37	25	3	0	0	0	0.42762	1	1746	1746		3.8459	0	1	40826	+		41756	17962	24059	24060	51129	51129					-0.052005651168656186
SADDSDFRVF	10	Unmodified	_SADDSDFRVF_					0	0	0			REV__nc|ENSG00000206341|P01893|HLA-H	REV__nc|ENSG00000206341|P01893|HLA-H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.820556640625	2	579.756735	1157.49892	0.71926	0.00041699	0.53099	0.00030784	1.2502	0.00072484	579.7569980330302	50.697	0.51699	50.697	50.461	50.978	0					36	18	2	0	0	0	0.31143	1	11832	11832		17.113	4.5813	1	592680	+		41757	23175	24060	24061	51130	51130					-0.07353233529670433
SADLESADLL	10	Unmodified	_SADLESADLL_					0	0	0		ENSG00000100580|ENST00000216468|TMED8	ENSG00000100580|ENST00000216468|TMED8	ENSG00000100580|ENST00000216468|TMED8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2564697265625	2	517.256037	1032.49752	0.58328	0.0003017	0.82877	0.00042869	1.4121	0.00073039	517.2562863887204	46.794	0.98105	46.794	46.43	47.411	0					85	34	3	0	0	0	0.22916	2	10550	10550;10608		29.082	0	1	1486300			41758	1608	24061	24062	51131;51132	51131					-0.017428676184181313
SADLIQHY	8	Unmodified	_SADLIQHY_					0	0	0		ENSG00000178229|ENST00000321545|ZNF543	ENSG00000178229|ENST00000321545|ZNF543	ENSG00000178229|ENST00000321545|ZNF543	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7451477050781	2	473.735074	945.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.873	1	18.814	18.314	19.314	-0.058174								0	0	0	0.36169	1	2062	2062		9.3474	0	1				41759	7046	24062	24063	51133	51133					-0.019313785162808017
SADLLQNI	8	Unmodified	_SADLLQNI_					0	0	0		nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.23736572265625	2	437.23745	872.460347	0.23367	0.00010217	-0.070751	-3.0935E-05	0.16292	7.1235E-05	437.23733593008194	55.701	0.45332	55.701	55.482	55.935	0					24	15	2	0	0	0	0.042854	1	13340	13340		81.613	3.4637	1	302460			41760	4612	24063	24064	51134	51134					0.019015056264720442
SADLLQNI	8	Unmodified	_SADLLQNI_					0	0	0		nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.23736572265625	2	437.23745	872.460347	0.29683	0.00012978	-1.009	-0.00044116	-0.71214	-0.00031137	437.2369524394284	55.777	0.5406	55.758	55.508	56.048	-0.019077					29	19	3	0	0	0	0.035151	1	13370	13370		85.272	7.1226	1	272040			41761	4612	24063	24064	51135	51135					0.019015056264720442
SADLLQNI	8	Unmodified	_SADLLQNI_					0	0	0		nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	437.23745	872.460347	0.33334	0.00014575	-0.56444	-0.00024679	-0.2311	-0.00010105	437.2371193943789	55.637	0.56724	55.708	55.422	55.989	0.070889	-0.014432	6.2849E-05	NaN	85.272	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328700			41762	4612	24063	24064							0.019015056264720442
SADRVVAFM	9	Unmodified	_SADRVVAFM_					0	0	0		nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000185551|ENST00000394166|NR2F2;ENSG00000175745|ENST00000327111|NR2F1	nc|ENSG00000185551|P24468-3|NR2F2	nc|ENSG00000185551|P24468-3|NR2F2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.25384521484375	2	498.252577	994.490601	0.090172	4.4928E-05	2.1636	0.001078	2.2538	0.0011229	498.25378070383454	15.482	0.50409	15.417	15.275	15.779	-0.064413					28	16	2	0	0	0	0.25706	1	1063	1063		6.7232	1.4925	1	94537			41763	6880	24064	24065	51136	51136					-0.006864589799761234
SADTTILFV	9	Unmodified	_SADTTILFV_					0	0	0		ENSG00000124783|ENST00000244763|SSR1	ENSG00000124783|ENST00000244763|SSR1	ENSG00000124783|ENST00000244763|SSR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7605285644531	2	483.760758	965.506963	-0.0077111	-3.7303E-06	-0.48832	-0.00023623	-0.49603	-0.00023996	483.760389176475	73.569	0.63704	73.569	73.335	73.972	0					44	22	3	0	0	0	0.14099	1	18821	18821		42.095	18.946	1	444350			41764	3180	24065	24066	51137	51137					0.02282945457761798
SADTTILFV	9	Unmodified	_SADTTILFV_					0	0	0		ENSG00000124783|ENST00000244763|SSR1	ENSG00000124783|ENST00000244763|SSR1	ENSG00000124783|ENST00000244763|SSR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7605285644531	2	483.760758	965.506963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.584	1	73.637	73.137	74.137	0.052856								0	0	0	0.028537	1	18806	18806		67.344	22.937	1				41765	3180	24065	24066	51138	51138					0.02282945457761798
SAEETEAK	8	Unmodified	_SAEETEAK_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.5946044921875	2	432.700897	863.387241	-0.21321	-9.2257E-05	-2.5949	-0.0011228	-2.8081	-0.0012151	432.69966112417137	25.193	0.59389	25.137	24.888	25.482	-0.055929					30	20	2	0	0	0	0.34092	1	3945	3945		2.0598	0	1	100640			41766	3421	24066	24067	51139	51139					-0.04991667886815776
SAEQSFYVLSG	11	Unmodified	_SAEQSFYVLSG_					0	0	0			REV__nc|ENSG00000186480|O15503-2|INSIG1	REV__nc|ENSG00000186480|O15503-2|INSIG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.2826538085938	2	594.282586	1186.55062	0.44295	0.00026324	-0.066479	-3.9507E-05	0.37648	0.00022373	594.2824096175717	38.698	0.32518	38.789	38.647	38.972	0.090881					30	11	3	0	0	0	0.28258	1	8102	8102		23.79	2.0431	1	251070	+		41767	23140	24067	24068	51140	51140					-0.0351948983575312
SAEYISDNRR	10	Unmodified	_SAEYISDNRR_					0	0	0			REV__nc|ENSG00000141971|Q96EY5-2|MVB12A	REV__nc|ENSG00000141971|Q96EY5-2|MVB12A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.9292297363281	3	404.198548	1209.57381	-0.24188	-9.7769E-05	0.42252	0.00017078	0.18064	7.3015E-05	404.1987790240717	42.798	0.59375	42.883	42.648	43.242	0.085201					43	21	3	0	0	0	0.31994	1	9313	9313		1.4551	0	1	291300	+		41768	16097	24068	24069	51141	51141					-0.022590509984411256
SAFDRILSSK	10	Unmodified	_SAFDRILSSK_					0	0	0		ENST00000466134.5_1_21:45735979-45739299:+|nuORF;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF	ENST00000466134.5_1_21:45735979-45739299:+|nuORF	ENST00000466134.5_1_21:45735979-45739299:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.30908203125	2	562.308938	1122.60332	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.849	1	41.849	41.349	42.349	0								0	0	0	0.0036045	1	9057	9057		84.738	33.322	1				41769	4414	24069	24070	51142	51142					0.04692513017721467
SAFGGSLPAK	10	Unmodified	_SAFGGSLPAK_					0	0	0		HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;nc|ENSG00000147874|Q7Z4H7-2|HAUS6;HAUS6|p.P532Hfs*10|1|0.04|ENSG00000147874|chr9:19063042-19063042|G/-|frameshift_variant	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.236572265625	2	467.753267	933.491981	0.063736	2.9813E-05	-1.2499	-0.00058465	-1.1862	-0.00055483	467.75378169924124	33.812	0.74828	33.879	33.549	34.298	0.066704					49	26	3	0	0	0	0.28645	1	6538	6538		27.223	7.8613	1	332540			41770	4788	24070	24071	51143	51143					0.022574983804247495
SAFGQAFSK	9	Unmodified	_SAFGQAFSK_					0	0	0		ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.73687744140625	2	471.737617	941.460681	-1.3309	-0.00062783	0.43667	0.00020599	-0.89421	-0.00042183	471.73763809593703	34.924	0.55457	34.924	34.672	35.227	0					46	19	3	0	0	0	0.12334	1	6939	6939		53.47	31.933	1	479500			41771	3439	24071	24072	51144	51144					-0.012390746536766528
SAFGQAFSK	9	Unmodified	_SAFGQAFSK_					0	0	0		ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7369384765625	2	471.737617	941.460681	-1.2994	-0.00061298	0.32552	0.00015356	-0.9739	-0.00045942	471.73764828481944	34.874	0.69224	34.949	34.685	35.377	0.075306					53	24	3	0	0	0	0.029914	1	6929	6929		85.764	49.637	1	473920			41772	3439	24071	24072	51145	51145					-0.012390746536766528
SAFGQAFSK	9	Unmodified	_SAFGQAFSK_					0	0	0		ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	ENSG00000129696|ENST00000431156|TTI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.73699951171875	2	471.737617	941.460681	-0.71228	-0.00033601	-0.21339	-0.00010066	-0.92567	-0.00043667	471.73747090531873	34.816	0.61006	34.893	34.644	35.254	0.077377					46	21	3	0	0	0	0.13573	1	6908	6908		49.742	22.858	1	370850			41773	3439	24071	24072	51146	51146					-0.012390746536766528
SAFGVIIEK	9	Unmodified	_SAFGVIIEK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.2791442871094	2	482.279118	962.543683	0.42551	0.00020521	-0.18204	-8.7794E-05	0.24347	0.00011742	482.27898800794907	48.221	1.1465	48.221	47.959	49.105	0					111	40	4	0	0	0	5.4053E-05	4	11036	10971;10984;11036;11155		148.27	76.346	1	7415100			41774	7057	24072	24073	51147;51148;51149;51150	51149					0.06091242074330694
SAFGVIIEK	9	Unmodified	_SAFGVIIEK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.2792053222656	2	482.279118	962.543683	0.50289	0.00024253	-0.16923	-8.1618E-05	0.33366	0.00016092	482.2789822281357	48.178	1.1814	48.222	47.926	49.108	0.04332					106	43	4	0	0	0	0.0008224	4	11048	10954;10997;11048;11100		125.04	68.861	1	7600100			41775	7057	24072	24073	51151;51152;51153;51154	51153					0.06091242074330694
SAFGVIIEK	9	Unmodified	_SAFGVIIEK_					0	0	0		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	482.279118	962.543683	0.62672	0.00030225	-0.38138	-0.00018393	0.24534	0.00011832	482.278893843231	48.206	0.94003	48.253	47.968	48.908	0.04752	0.021094	-0.00011039	NaN	148.27	100	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7720400			41776	7057	24072	24073							0.06091242074330694
SAFGYVFPK	9	Unmodified	_SAFGYVFPK_					0	0	0		ENSG00000084674|ENST00000233242|APOB;APOB|p.G3575Afs*48|1|0.18|ENSG00000084674|chr2:21006144-21006144|C/-|frameshift_variant	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7762451171875	2	508.26601	1014.51747	0.69947	0.00035552	-0.42344	-0.00021522	0.27604	0.0001403	508.26618261708404	54.664	0.48112	54.664	54.462	54.943	0					25	17	2	0	0	0	0.11234	1	13006	13006		43.772	32.948	1	301050			41777	1244	24073	24074	51155	51155					0.010789729028601869
SAFGYVFPK	9	Unmodified	_SAFGYVFPK_					0	0	0		ENSG00000084674|ENST00000233242|APOB;APOB|p.G3575Afs*48|1|0.18|ENSG00000084674|chr2:21006144-21006144|C/-|frameshift_variant	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.77655029296875	2	508.26601	1014.51747	0.57618	0.00029285	-0.4364	-0.00022181	0.13977	7.1043E-05	508.26609891152304	54.7	0.48061	54.763	54.434	54.915	0.063202					28	17	3	0	0	0	0.14786	1	12991	12991		31.268	15.421	1	274450			41778	1244	24073	24074	51156	51156					0.010789729028601869
SAFGYVFPK	9	Unmodified	_SAFGYVFPK_					0	0	0		ENSG00000084674|ENST00000233242|APOB;APOB|p.G3575Afs*48|1|0.18|ENSG00000084674|chr2:21006144-21006144|C/-|frameshift_variant	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.26601	1014.51747	0.66274	0.00033685	-0.40005	-0.00020333	0.26269	0.00013351	508.2660891858255	54.863	0.37253	54.847	54.655	55.028	-0.015923	0.089159	2.0834E-05	NaN	43.772	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252150			41779	1244	24073	24074							0.010789729028601869
SAFIVVLQF	9	Unmodified	_SAFIVVLQF_					0	0	0			REV__ENST00000506184.6_1_5:56471512-56471593:+|nuORF	REV__ENST00000506184.6_1_5:56471512-56471593:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2974853515625	2	512.29731	1022.58007	0.56871	0.00029135	-0.22846	-0.00011704	0.34025	0.00017431	512.2970928628984	64.16	0.65012	64.16	63.889	64.539	0					49	23	3	0	0	0	0.20167	1	15942	15942		29.082	7.3349	1	586130	+		41780	21748	24074	24075	51157	51157					0.06968118971042259
SAFIVVLQF	9	Unmodified	_SAFIVVLQF_					0	0	0			REV__ENST00000506184.6_1_5:56471512-56471593:+|nuORF	REV__ENST00000506184.6_1_5:56471512-56471593:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2970581054688	2	512.29731	1022.58007	0.40718	0.0002086	-0.24154	-0.00012374	0.16564	8.4856E-05	512.2971037572191	64.047	0.68073	64.14	63.873	64.554	0.09288					53	24	3	0	0	0	0.16283	1	15901	15901		29.082	2.1979	1	470580	+		41781	21748	24074	24075	51158	51158					0.06968118971042259
SAFIVVLQF	9	Unmodified	_SAFIVVLQF_					0	0	0			REV__ENST00000506184.6_1_5:56471512-56471593:+|nuORF	REV__ENST00000506184.6_1_5:56471512-56471593:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	512.29731	1022.58007	0.40718	0.0002086	-0.24154	-0.00012374	0.16564	8.4856E-05	512.2971037572191	64.047	0.68073	64.14	63.873	64.554	0.09288	-0.0050489	1.0984E-05	NaN	29.082	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	470580	+		41782	21748	24074	24075							0.06968118971042259
SAFKPSSAITK	11	Unmodified	_SAFKPSSAITK_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.8191528320312	2	568.819138	1135.62372	0.12241	6.9631E-05	-0.43825	-0.00024929	-0.31584	-0.00017966	568.8192485825782	25.506	0.44428	25.506	25.296	25.741	0					22	14	2	0	0	0	0.42863	1	4101	4101		7.4771	2.5801	1	119240			41783	591	24075	24076	51159	51159					0.061336836774898984
SAFKPSSAITK	11	Unmodified	_SAFKPSSAITK_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8189697265625	2	568.819138	1135.62372	0.073629	4.1882E-05	-0.36957	-0.00021022	-0.29594	-0.00016834	568.8190227162854	25.575	0.33662	25.519	25.341	25.677	-0.055931					25	11	3	0	0	0	0.43842	1	4120	4120		6.1918	1.2948	1	116400			41784	591	24075	24076	51160	51160					0.061336836774898984
SAFKPSSAITK	11	Unmodified	_SAFKPSSAITK_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.8189697265625	2	568.819138	1135.62372	-0.035437	-2.0157E-05	-0.40261	-0.00022901	-0.43805	-0.00024917	568.8190149630024	25.571	0.39074	25.539	25.347	25.738	-0.03141					21	13	2	0	0	0	0.39785	1	4112	4112		11.518	5.3121	1	120800			41785	591	24075	24076	51161	51161					0.061336836774898984
SAFLLPRQVF	10	Unmodified	_SAFLLPRQVF_					0	0	0			REV__ENSG00000183840|ENST00000329321|GPR39	REV__ENSG00000183840|ENST00000329321|GPR39	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3426513671875	2	589.340041	1176.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.961	1	90.962	90.462	91.462	0.0003891								0	0	0	0.37157	1	24122	24122		5.7319	2.1354	1		+		41786	18287	24076	24077	51162	51162					0.0842628415668969
SAFLSLTL	8	Unmodified	_SAFLSLTL_					0	0	0		ENST00000608694.1_1_7:129250897-129251161:-|nuORF	ENST00000608694.1_1_7:129250897-129251161:-|nuORF	ENST00000608694.1_1_7:129250897-129251161:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2471923828125	2	426.247286	850.48002	-0.039081	-1.6658E-05	0.11001	4.6889E-05	0.070924	3.0231E-05	426.24724389152914	70.981	1.0252	70.981	70.406	71.431	0					71	36	3	0	0	0	0.050494	1	17930	17930		77.984	0	1	553020			41787	12318	24077	24078	51163	51163					0.04879881637236849
SAFLSLTL	8	Unmodified	_SAFLSLTL_					0	0	0		ENST00000608694.1_1_7:129250897-129251161:-|nuORF	ENST00000608694.1_1_7:129250897-129251161:-|nuORF	ENST00000608694.1_1_7:129250897-129251161:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2470703125	2	426.247286	850.48002	-0.078976	-3.3663E-05	0.32554	0.00013876	0.24656	0.0001051	426.2473369401592	70.963	1.1113	71.024	70.351	71.463	0.060783					78	39	3	0	0	0	0.050494	1	17948	17948		77.984	0	1	499770			41788	12318	24077	24078	51164	51164					0.04879881637236849
SAFLSLTL	8	Unmodified	_SAFLSLTL_					0	0	0		ENST00000608694.1_1_7:129250897-129251161:-|nuORF	ENST00000608694.1_1_7:129250897-129251161:-|nuORF	ENST00000608694.1_1_7:129250897-129251161:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.2472229003906	2	426.247286	850.48002	0.049049	2.0907E-05	0.010471	4.4633E-06	0.05952	2.537E-05	426.2472673494907	70.858	1.0721	70.833	70.407	71.479	-0.024872					65	38	3	0	0	0	0.029359	2	17952	17952;18004		89.427	0	1	454410			41789	12318	24077	24078	51165;51166	51165					0.04879881637236849
SAFPFPVTV	9	Unmodified	_SAFPFPVTV_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7607116699219	2	482.760561	963.506569	0.39164	0.00018907	0.034697	1.675E-05	0.42634	0.00020582	482.7604220671855	82.833	0.80772	82.833	82.513	83.321	0					80	30	4	0	0	0	0.0023784	3	21607	21607;21656;21707		107.19	41.952	1	1583500			41790	3325	24078	24079	51167;51168;51169	51167					0.02335570528578046
SAFPFPVTV	9	Unmodified	_SAFPFPVTV_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7605895996094	2	482.760561	963.506569	0.34141	0.00016482	-0.88925	-0.00042929	-0.54784	-0.00026447	482.76045654331955	82.749	1.8716	82.822	82.023	83.894	0.07309					109	74	2	0	0	0	0.0013036	4	21607	21560;21607;21659;21715		118.89	43.966	1	1475000			41791	3325	24078	24079	51170;51171;51172;51173	51171					0.02335570528578046
SAFPFPVTV	9	Unmodified	_SAFPFPVTV_					0	0	0		ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	ENSG00000127526|ENST00000595753|SLC35E1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.76055908203125	2	482.760561	963.506569	0.4213	0.00020339	-0.28043	-0.00013538	0.14086	6.8004E-05	482.7604171709199	82.835	1.2807	82.814	82.061	83.342	-0.020584					106	50	4	0	0	0	0.00033443	3	21635	21583;21635;21686		131.27	45.996	1	1649000			41792	3325	24078	24079	51174;51175;51176	51175					0.02335570528578046
SAFPPLPVLQK	11	Unmodified	_SAFPPLPVLQK_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.8193969726562	2	598.855524	1195.69649	0.35104	0.00021022	-0.14384	-8.6138E-05	0.20721	0.00012409	598.8553738859242	65.207	1.2	65.207	64.755	65.955	0					89	43	3	0	0	0	0.31739	1	16229	16229		21.59	14.867	1	290660			41793	8679	24079	24080	51177	51177					0.1064743747092507
SAFPPLPVLQK	11	Unmodified	_SAFPPLPVLQK_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.8193969726562	2	598.855524	1195.69649	0.2458	0.0001472	0.083295	4.9882E-05	0.3291	0.00019708	598.8554929381673	65.145	1.2055	65.233	64.742	65.947	0.088882					98	44	3	0	0	0	0.32855	1	16152	16152		10.8	4.0763	1	434450			41794	8679	24079	24080	51178	51178					0.1064743747092507
SAFPPLPVLQK	11	Unmodified	_SAFPPLPVLQK_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	598.855524	1195.69649	0.26037	0.00015592	0.2439	0.00014606	0.50427	0.00030199	598.855517179549	65.269	1.3154	65.258	64.75	66.066	-0.011337	0.025405	0.00022654	NaN	21.59	107	47	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362300			41795	8679	24079	24080							0.1064743747092507
SAFQAPAVK	9	Unmodified	_SAFQAPAVK_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7558288574219	2	459.75581	917.497067	-0.018305	-8.416E-06	0.83948	0.00038595	0.82117	0.00037754	459.7561659411695	33.082	1.0397	33.082	32.606	33.646	0					76	36	4	0	0	0	0.020233	1	6395	6395		63.961	36.332	1	510090			41796	858	24080	24081	51179	51179					0.035018022430335805
SAFQAPAVK	9	Unmodified	_SAFQAPAVK_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.7558898925781	2	459.75581	917.497067	0.079193	3.6409E-05	0.82153	0.0003777	0.90073	0.00041411	459.75616641215737	32.945	1.1032	33	32.59	33.693	0.055309					71	39	3	0	0	0	0.032589	1	6364	6364		59.368	35.348	1	458840			41797	858	24080	24081	51180	51180					0.035018022430335805
SAFQAPAVK	9	Unmodified	_SAFQAPAVK_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7557678222656	2	459.75581	917.497067	0.11854	5.4498E-05	0.87239	0.00040109	0.99093	0.00045559	459.75617701080756	32.956	1.0156	33.011	32.579	33.594	0.054371					78	36	4	0	0	0	0.020233	1	6353	6353		63.961	39.94	1	462610			41798	858	24080	24081	51181	51181					0.035018022430335805
SAFQAPAVKK	10	Unmodified	_SAFQAPAVKK_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.8032836914062	2	523.803291	1045.59203	0.40448	0.00021187	-0.1649	-8.6375E-05	0.23958	0.00012549	523.8031462202282	25.254	0.95205	25.254	24.762	25.714	0					89	32	4	0	0	0	0.09976	1	3985	3985		67.081	40.197	1	562760			41799	858	24081	24082	51182	51182					0.07105735714230832
SAFQAPAVKK	10	Unmodified	_SAFQAPAVKK_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.803466796875	2	523.803291	1045.59203	0.22713	0.00011897	0.053822	2.8192E-05	0.28096	0.00014717	523.8032623298176	25.313	0.92869	25.257	24.748	25.677	-0.055931					87	32	4	0	0	0	0.15532	1	3981	3981		61.602	42.345	1	598060			41800	858	24081	24082	51183	51183					0.07105735714230832
SAFQAPAVKK	10	Unmodified	_SAFQAPAVKK_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.8034057617188	2	523.803291	1045.59203	0.078147	4.0934E-05	0.19948	0.00010449	0.27763	0.00014542	523.8033484974679	25.321	0.99942	25.29	24.765	25.764	-0.03141					99	34	4	0	0	0	0.15401	1	4016	4016		63.227	42.774	1	560260			41801	858	24081	24082	51184	51184					0.07105735714230832
SAFQHFWNR	9	Unmodified	_SAFQHFWNR_					0	0	0		nc|ENSG00000138617|Q8N5Y8-3|PARP16;ENSG00000138617|ENST00000649807|PARP16;nc|ENSG00000138617|Q8N5Y8-2|PARP16	nc|ENSG00000138617|Q8N5Y8-3|PARP16	nc|ENSG00000138617|Q8N5Y8-3|PARP16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.25927734375	2	596.785964	1191.55738	0.55053	0.00032855	-0.84933	-0.00050687	-0.2988	-0.00017832	596.7853672919553	43.004	0.35102	43.089	42.891	43.242	0.085197					15	12	2	0	0	0	0.24471	1	9364	9364		17.113	8.3675	1	239530			41802	4166	24082	24083	51185	51185					-0.03074087373875045
SAFTLPVI	8	Unmodified	_SAFTLPVI_					0	0	0		ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.2494201660156	2	424.249829	846.485105	-0.28179	-0.00011955	-0.33139	-0.00014059	-0.61318	-0.00026014	424.2495114689947	80.769	0.47124	80.834	80.603	81.074	0.065102					31	19	2	0	0	0	0.082568	1	21007	21007		63.563	9.9873	1	243000			41803	5847	24083	24084	51186	51186					0.055721854998637355
SAFTLPVI	8	Unmodified	_SAFTLPVI_					0	0	0		ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.2491455078125	2	424.249829	846.485105	-0.020401	-8.655E-06	-0.60131	-0.00025511	-0.62171	-0.00026376	424.24931888943314	80.906	0.48481	80.88	80.625	81.109	-0.026825					36	19	2	0	0	0	0.13961	1	21031	21031		53.576	9.1686	1	249960			41804	5847	24083	24084	51187	51187					0.055721854998637355
SAFTLPVI	8	Unmodified	_SAFTLPVI_					0	0	0		ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	424.249829	846.485105	-0.074904	-3.1778E-05	-0.087454	-3.7102E-05	-0.16236	-6.888E-05	424.2495945547122	80.86	0.71587	80.86	80.54	81.256	0	0.0022425	0.00014358	NaN	63.563	73	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252190			41805	5847	24083	24084							0.055721854998637355
SAFYVPFAK	9	Unmodified	_SAFYVPFAK_					0	0	0		ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-2|LDAH	ENSG00000118961|ENST00000237822|LDAH	ENSG00000118961|ENST00000237822|LDAH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2740478515625	2	515.273835	1028.53312	0.38815	0.00020001	-0.37791	-0.00019472	0.010249	5.2809E-06	515.2736367497739	58.24	0.72726	58.24	57.927	58.654	0					44	24	2	0	0	0	0.079752	1	14131	14131		41.84	24.727	1	1516400			41806	2852	24084	24085	51188	51188					0.01999259419903865
SAFYVPFAK	9	Unmodified	_SAFYVPFAK_					0	0	0		ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-2|LDAH	ENSG00000118961|ENST00000237822|LDAH	ENSG00000118961|ENST00000237822|LDAH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2739868164062	2	515.273835	1028.53312	0.27705	0.00014276	-0.17167	-8.8458E-05	0.10538	5.4298E-05	515.2737463382063	58.067	0.71558	58.152	57.865	58.581	0.085617					46	25	2	0	0	0	0.12642	1	14082	14082		34.402	19.563	1	1600500			41807	2852	24084	24085	51189	51189					0.01999259419903865
SAFYVPFAK	9	Unmodified	_SAFYVPFAK_					0	0	0		ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-2|LDAH	ENSG00000118961|ENST00000237822|LDAH	ENSG00000118961|ENST00000237822|LDAH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.273681640625	2	515.273835	1028.53312	0.53373	0.00027502	2.8963	0.0014924	3.4301	0.0017674	515.273635931861	58.238	0.72882	58.221	57.953	58.681	-0.0172					96	26	5	0	0	0	0.12563	1	14088	14088		39.95	15.929	1	2050800			41808	2852	24084	24085	51190	51190					0.01999259419903865
SAGAFHLF	8	Unmodified	_SAGAFHLF_					0	0	0			REV__ENSG00000274102|ENST00000614722|OR4M2	REV__ENSG00000274102|ENST00000614722|OR4M2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.7750244140625	2	425.216321	848.418088	-0.19511	-8.2962E-05	2.5678	0.0010919	2.3727	0.0010089	425.2173596577454	34.06	0.44262	34.127	34.021	34.463	0.066704					25	15	2	0	0	0	0.34185	1	6643	6643		10.183	2.8942	1	108170	+		41809	18230	24085	24086	51191	51191					-0.012184249912479572
SAGDVAVQK	9	Unmodified	_SAGDVAVQK_					0	0	0		ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;ENST00000520647.5_1_5:153755841-153792087:+|nuORF;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.7349853515625	2	437.735074	873.455596	-0.22656	-9.9173E-05	0.1474	6.4524E-05	-0.079154	-3.4649E-05	437.7350828002827	15.479	0.80407	15.479	15.289	16.093	0					50	27	2	0	0	0	0.017549	1	1028	1028		67.838	24.066	1	232450			41810	5852	24086	24087	51192	51192					0.013806214837131847
SAGDVAVQK	9	Unmodified	_SAGDVAVQK_					0	0	0		ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;ENST00000520647.5_1_5:153755841-153792087:+|nuORF;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.7349548339844	2	437.735074	873.455596	-0.16648	-7.2874E-05	0.073463	3.2157E-05	-0.093017	-4.0717E-05	437.7350630148289	15.587	0.99499	15.477	15.176	16.171	-0.10981					55	33	2	0	0	0	0.0054984	1	1067	1067		86.332	38.583	1	277060			41811	5852	24086	24087	51193	51193					0.013806214837131847
SAGDVAVQK	9	Unmodified	_SAGDVAVQK_					0	0	0		ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;ENST00000520647.5_1_5:153755841-153792087:+|nuORF;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	ENST00000517958.1_1_5:153783698-153796529:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.73504638671875	2	437.735074	873.455596	-0.19919	-8.7193E-05	-0.35091	-0.00015361	-0.5501	-0.0002408	437.73508389622253	15.588	0.85019	15.523	15.186	16.036	-0.064413					67	28	4	0	0	0	0.0054984	2	1057	1057;1105		86.332	34.702	1	274010			41812	5852	24086	24087	51194;51195	51194					0.013806214837131847
SAGHGLPAK	9	Unmodified	_SAGHGLPAK_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.2323913574219	2	419.232502	836.450451	-0.36791	-0.00015424	0.44464	0.00018641	0.076729	3.2167E-05	419.23258364374186	13.648	0.76524	13.648	13.227	13.992	0					68	26	5	0	0	0	0.0042138	1	497	497		92.653	52.696	1	561370			41813	2520;11396	24087	24088	51196	51196					0.025683624117505133
SAGHGLPAK	9	Unmodified	_SAGHGLPAK_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.2323303222656	2	419.232502	836.450451	-0.2657	-0.00011139	0.35058	0.00014698	0.084881	3.5585E-05	419.23255262407463	13.741	0.72123	13.636	13.212	13.933	-0.10466					66	25	4	0	0	0	0.0059482	1	521	521		85.642	45.684	1	489640			41814	2520;11396	24087	24088	51197	51197					0.025683624117505133
SAGHGLPAK	9	Unmodified	_SAGHGLPAK_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.2590637207031	2	419.232502	836.450451	-0.07756	-3.2515E-05	0.31071	0.00013026	0.23315	9.7744E-05	419.2326019791977	18.582	0.57719	18.465	18.184	18.761	-0.11739					28	19	2	0	0	0	0.24289	1	1964	1964		18.146	9.5531	1	36544			41815	2520;11396	24087	24088	51198	51198					0.025683624117505133
SAGHGLPAK	9	Unmodified	_SAGHGLPAK_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.2323913574219	2	419.232502	836.450451	-0.25882	-0.00010851	0.39746	0.00016663	0.13864	5.8121E-05	419.2325595341015	13.742	0.76005	13.676	13.247	14.007	-0.066068					67	26	4	0	0	0	0.0028626	1	523	523		103.35	58.946	1	552480			41816	2520;11396	24087	24088	51199	51199					0.025683624117505133
SAGHGLPAK	9	Unmodified	_SAGHGLPAK_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.593505859375	2	419.232502	836.450451	-0.25355	-0.0001063	-0.71256	-0.00029873	-0.96611	-0.00040502	419.2324664719936	18.585	0.47851	18.527	18.285	18.763	-0.058174					27	16	3	0	0	0	0.23784	1	1963	1963		19.257	9.1831	1	53208			41817	2520;11396	24087	24088	51200	51200					0.025683624117505133
SAGHGLPAK	9	Unmodified	_SAGHGLPAK_					0	0	0		nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1;ENST00000512507.5_1_5:134670668-134688768:-|nuORF	nc|ENSG00000113648|O75367|MACROH2A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	419.232502	836.450451	-0.18718	-7.847E-05	0.060693	2.5444E-05	-0.12648	-5.3026E-05	419.2323504545067	18.447	0.63796	18.447	18.127	18.765	0	-0.032213	0.0001178	NaN	19.257	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38176			41818	2520;11396	24087	24088							0.025683624117505133
SAGKAKIR	8	Unmodified	_SAGKAKIR_					0	0	0		ENSG00000120675|ENST00000379221|DNAJC15	ENSG00000120675|ENST00000379221|DNAJC15	ENSG00000120675|ENST00000379221|DNAJC15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.519775390625	2	415.763969	829.513385	0.15558	6.4686E-05	-2.8264	-0.0011751	-2.6708	-0.0011104	415.763882105799	29.148	0.12831	29.148	29.089	29.218	0					6	4	2	0	0	0	0.34092	1	5186	5186		8.5933	0	1	31863			41819	2954	24088	24089	51201	51201					0.09180928199805294
SAGLLVVILK	10	Unmodified	_SAGLLVVILK_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1;ENST00000494467.1_1_9:107587931-107593243:-|nuORF	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8417053222656	2	506.841885	1011.66922	0.37064	0.00018785	-0.60892	-0.00030863	-0.23828	-0.00012077	506.8414967468585	68.527	0.95393	68.527	68.275	69.229	0					66	34	3	0	0	0	0.0017661	2	17249	17249;17296		110.55	59.137	1	1335400			41820	5917	24089	24090	51202;51203	51202					0.16384953930548818
SAGLLVVILK	10	Unmodified	_SAGLLVVILK_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1;ENST00000494467.1_1_9:107587931-107593243:-|nuORF	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.84161376953125	2	506.841885	1011.66922	0.24144	0.00012237	-0.54602	-0.00027675	-0.30459	-0.00015438	506.84153515869355	68.461	0.91699	68.533	68.24	69.157	0.071945					76	33	3	0	0	0	0.0017661	2	17230	17230;17280		110.55	57.149	1	1317400			41821	5917	24089	24090	51204;51205	51204					0.16384953930548818
SAGLLVVILK	10	Unmodified	_SAGLLVVILK_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1;ENST00000494467.1_1_9:107587931-107593243:-|nuORF	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.8416442871094	2	506.841885	1011.66922	0.3599	0.00018241	-0.69583	-0.00035268	-0.33593	-0.00017026	506.84147384623446	68.518	1.0436	68.498	68.252	69.296	-0.019157					74	36	3	0	0	0	0.0017661	1	17259	17259		110.55	59.137	1	1146800			41822	5917	24089	24090	51206	51206					0.16384953930548818
SAGLPDSDPFQ	11	Unmodified	_SAGLPDSDPFQ_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.279052734375	2	567.259111	1132.50367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.88	1	111.88	111.38	112.38	0								0	0	0	0.35514	1	29092	29092		7.1017	0.37856	1		+		41823	14382	24090	24091	51207	51207					-0.05728349386913578
SAGLPDSDPFQ	11	Unmodified	_SAGLPDSDPFQ_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.27783203125	2	567.259111	1132.50367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.64	1	116.64	116.14	117.14	0								0	0	0	0.35283	1	30187	30187		7.609	0.88579	1		+		41824	14382	24090	24091	51208	51208					-0.05728349386913578
SAGPPSLRK	9	Unmodified	_SAGPPSLRK_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2872009277344	2	456.766709	911.518865	0.072685	3.32E-05	-0.54023	-0.00024676	-0.46755	-0.00021356	456.7663866217487	17.011	0.74864	17.011	16.548	17.296	0					60	25	3	0	0	0	0.2524	1	1490	1490		11.495	2.7493	1	210340			41825	4716	24091	24092	51209	51209					0.05956606991605895
SAGPPSLRK	9	Unmodified	_SAGPPSLRK_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4;nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7664794921875	2	456.766709	911.518865	-0.052213	-2.3849E-05	-0.41491	-0.00018952	-0.46713	-0.00021337	456.76641331639564	17.211	0.6662	17.093	16.72	17.386	-0.11739					62	23	4	0	0	0	0.20679	1	1546	1546		22.658	5.7158	1	213060			41826	4716	24091	24092	51210	51210					0.05956606991605895
SAGRDMCGHLE	11	Unmodified	_SAGRDMCGHLE_					0	0	0			REV__ENST00000537892.1_1_12:120741745-120750480:+|nuORF	REV__ENST00000537892.1_1_12:120741745-120750480:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.2509155273438	2	588.25024	1174.48593	0.34542	0.00020319	0.5828	0.00034283	0.92822	0.00054602	588.2503693759509	80.28	0.55926	80.28	79.981	80.54	0					36	20	2	0	0	0	0.33255	1	20863	20863		2.9952	0	1	419890	+		41827	22097	24092	24093	51211	51211					-0.09433711185033644
SAHAEMWPH	9	Unmodified	_SAHAEMWPH_					0	0	0			REV__ENST00000481314.5_1_3:121363541-121379717:-|nuORF	REV__ENST00000481314.5_1_3:121363541-121379717:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.233154296875	2	533.232176	1064.4498	0.44996	0.00023993	0.76994	0.00041056	1.2199	0.00065049	533.2324588467542	21.868	0.81593	21.868	21.487	22.303	0					54	29	2	0	0	0	0.34536	1	2941	2941		2.0598	0	1	106680	+		41828	21489	24093	24094	51212	51212					-0.07984800299618655
SAHLKGKKS	9	Unmodified	_SAHLKGKKS_					0	0	0			REV__ENST00000503413.1_1_4:81189541-81207823:+|nuORF	REV__ENST00000503413.1_1_4:81189541-81207823:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.75042724609375	2	478.287808	954.561064	-0.12852	-6.147E-05	-0.010008	-4.7869E-06	-0.13853	-6.6256E-05	478.28761082112214	13.892	0.50459	13.788	13.487	13.991	-0.10466					37	17	3	0	0	0	0.26168	1	497	497		1.8442	1.0506	1	102540	+		41829	15944	24094	24095	51213	51213					0.08196582399989438
SAHTSLTL	8	Unmodified	_SAHTSLTL_					0	0	0			REV__ENST00000472823.5_1_6:29570561-29570969:-|nuORF	REV__ENST00000472823.5_1_6:29570561-29570969:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.2365417480469	2	415.224342	828.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.092	1	72.149	71.649	72.649	0.056572								0	0	0	0.30279	1	18351	18351		28.487	5.3384	1		+		41830	21375	24095	24096	51214	51214					0.013052364549935191
SAIAAVIAR	9	Unmodified	_SAIAAVIAR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2714538574219	2	436.271627	870.528701	-0.41712	-0.00018198	0.37576	0.00016393	-0.041358	-1.8044E-05	436.2717010347899	39.011	0.55276	39.011	38.741	39.294	0					43	19	3	0	0	0	0.0016361	2	8181	8181;8239		114.65	49.414	1	529450			41831	6014	24096	24097	51215;51216	51215					0.0882579499698295
SAIAAVIAR	9	Unmodified	_SAIAAVIAR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.2711486816406	2	436.271627	870.528701	-0.084845	-3.7015E-05	-0.043394	-1.8931E-05	-0.12824	-5.5947E-05	436.27150599160666	38.899	0.49097	38.992	38.76	39.251	0.09267					33	17	2	0	0	0	0.0028626	2	8160	8160;8213		103.35	47.176	1	651130			41832	6014	24096	24097	51217;51218	51217					0.0882579499698295
SAIAAVIAR	9	Unmodified	_SAIAAVIAR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.2713623046875	2	436.271627	870.528701	0.16954	7.3964E-05	-0.32653	-0.00014246	-0.15699	-6.8492E-05	436.27145069954224	38.891	0.45195	38.991	38.76	39.212	0.099403					33	15	3	0	0	0	0.0028626	1	8142	8142		103.35	38.118	1	585810			41833	6014	24096	24097	51219	51219					0.0882579499698295
SAIDPEAIPVK	11	Unmodified	_SAIDPEAIPVK_					0	0	0		nc|ENSG00000133657|Q9H7F0-2|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3;ENST00000484023.1_1_3:194151670-194152613:-|nuORF	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3192138671875	2	570.318971	1138.62339	0.2833	0.00016157	0.21078	0.00012021	0.49407	0.00028178	570.3188611063551	46.067	0.57427	46.067	45.776	46.35	0					42	20	3	0	0	0	0.26027	1	10340	10340		39.213	14.222	1	794700			41834	3721	24097	24098	51220	51220					0.059622639576673464
SAIDPEAIPVK	11	Unmodified	_SAIDPEAIPVK_					0	0	0		nc|ENSG00000133657|Q9H7F0-2|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3;ENST00000484023.1_1_3:194151670-194152613:-|nuORF	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.3190307617188	2	570.318971	1138.62339	0.34437	0.0001964	0.11291	6.4392E-05	0.45728	0.00026079	570.3187559101334	46.01	0.66508	46.075	45.811	46.476	0.065048					53	23	4	0	0	0	0.2197	1	10302	10302		29.437	10.075	1	748910			41835	3721	24097	24098	51221	51221					0.059622639576673464
SAIDPEAIPVK	11	Unmodified	_SAIDPEAIPVK_					0	0	0		nc|ENSG00000133657|Q9H7F0-2|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3;ENST00000484023.1_1_3:194151670-194152613:-|nuORF	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	570.318971	1138.62339	0.11735	6.6926E-05	0.40459	0.00023075	0.52194	0.00029767	570.3187854908017	45.976	0.68441	46.035	45.763	46.448	0.059837	-0.023622	0.00021431	NaN	29.437	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	785900			41836	3721	24097	24098							0.059622639576673464
SAKKKESHVIT	11	Unmodified	_SAKKKESHVIT_					0	0	0		ARHGAP42|p.L160Vfs*10|1|0.11|ENSG00000165895|chr11:100913544-100913545|-/GTAA|frameshift_variant	ARHGAP42|p.L160Vfs*10|1|0.11|ENSG00000165895|chr11:100913544-100913545|-/GTAA|frameshift_variant	ARHGAP42|p.L160Vfs*10|1|0.11|ENSG00000165895|chr11:100913544-100913545|-/GTAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	613.8465576171875	2	614.356419	1226.69829	0.098487	6.0506E-05	-1.3054	-0.00080196	-1.2069	-0.00074145	614.355695647124	30.865	0.79459	30.892	30.638	31.433	0.027157					76	28	4	0	0	0	0.32951	1	5636	5636		8.7454	2.5396	1	742270			41837	53	24098	24099	51222	51222					0.09400446488893976
SAKSFDPLVN	10	Unmodified	_SAKSFDPLVN_					0	0	0			REV__ENSG00000136205|ENST00000311160|TNS3	REV__ENSG00000136205|ENST00000311160|TNS3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2831420898438	2	539.282389	1076.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.12	1	100.16	99.661	100.66	0.038994								0	0	0	0.37157	1	26765	26765		5.7319	0	1		+		41838	15796	24099	24100	51223	51223					0.01501135235048423
SAKSVKPPP	9	Unmodified	_SAKSVKPPP_					0	0	0			REV__ENSG00000105085|ENST00000263390|MED26	REV__ENSG00000105085|ENST00000263390|MED26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.75872802734375	2	455.77146	909.528367	0.10211	4.6541E-05	-0.8845	-0.00040313	-0.78238	-0.00035659	455.7707826553548	24.796	0.76265	24.796	24.248	25.011	0					33	25	2	0	0	0	0.25066	1	3856	3856		11.64	2.2929	1	108790	+		41839	14436	24100	24101	51224	51224					0.06998375277134983
SAKSVKPPP	9	Unmodified	_SAKSVKPPP_					0	0	0			REV__ENSG00000105085|ENST00000263390|MED26	REV__ENSG00000105085|ENST00000263390|MED26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2586975097656	2	455.77146	909.528367	0.065358	2.9788E-05	-0.87874	-0.0004005	-0.81338	-0.00037072	455.7709796120398	24.88	0.64217	24.824	24.544	25.186	-0.055931					42	22	3	0	0	0	0.31038	1	3933	3933		7.2892	2.0586	1	119960	+		41840	14436	24100	24101	51225	51225					0.06998375277134983
SAKTLHTW	8	Unmodified	_SAKTLHTW_					0	0	0		ENSG00000174804|ENST00000531380|FZD4	ENSG00000174804|ENST00000531380|FZD4	ENSG00000174804|ENST00000531380|FZD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.73687744140625	2	472.253434	942.492316	-1.1178	-0.00052787	0.0068244	3.2229E-06	-1.111	-0.00052465	472.25328540079227	35.046	0.63137	35.046	34.697	35.328	0					36	22	2	0	0	0	0.34247	1	6939	6939		8.5933	3.8373	1	180640			41841	6818	24101	24102	51226	51226					0.018769181002767255
SALEIHKAI	9	Unmodified	_SALEIHKAI_					0	0	0		ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.24713134765625	2	491.290017	980.565481	0.23235	0.00011415	1.3083	0.00064275	1.5406	0.0007569	491.29062328512225	69.651	0.59282	69.629	69.293	69.886	-0.022087					40	21	3	0	0	0	0.2451	1	17515	17515		15.847	1.0089	1	191830			41842	8365	24102	24103	51227	51227					0.07442046822893644
SALEIHKAI	9	Unmodified	_SALEIHKAI_					0	0	0		ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	ENSG00000213799|ENST00000458035|ZNF845	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	491.290017	980.565481	0.20961	0.00010298	1.5173	0.00074542	1.7269	0.0008484	491.29085285896736	69.5	0.51788	69.566	69.366	69.884	0.06604	-0.041364	-3.1759E-05	NaN	10.824	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219250			41843	8365	24102	24103							0.07442046822893644
SALERPFTV	9	Unmodified	_SALERPFTV_					0	0	0			REV__ENSG00000128268|ENST00000341184|MGAT3	REV__ENSG00000128268|ENST00000341184|MGAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.7959899902344	2	510.279649	1018.54475	0.58422	0.00029811	-1.0228	-0.00052191	-0.43857	-0.00022379	510.2793795847045	47.495	0.55154	47.495	47.162	47.714	0					44	19	3	0	0	0	0.2451	1	10693	10693		15.847	1.0089	1	366300	+		41844	15365	24103	24104	51228	51228					0.036214564432498264
SALERPFTV	9	Unmodified	_SALERPFTV_					0	0	0			REV__ENSG00000128268|ENST00000341184|MGAT3	REV__ENSG00000128268|ENST00000341184|MGAT3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	510.279649	1018.54475	0.76935	0.00039258	-1.0743	-0.0005482	-0.30496	-0.00015562	510.27948653930935	47.442	0.53534	47.485	47.185	47.72	0.04332	-0.0047529	-3.0014E-05	NaN	15.847	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355720	+		41845	15365	24103	24104							0.036214564432498264
SALHIAIEK	9	Unmodified	_SALHIAIEK_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.29010009765625	2	491.290017	980.565481	0.47489	0.00023331	-0.2622	-0.00012882	0.21269	0.00010449	491.28982549688953	32.708	0.62366	32.708	32.415	33.039	0					34	21	2	0	0	0	0.068498	2	6244	6244;6297		46.022	19.754	1	397860			41846	7700	24104	24105	51229;51230	51229					0.07442046822893644
SALHIAIEK	9	Unmodified	_SALHIAIEK_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.2899475097656	2	491.290017	980.565481	0.49404	0.00024272	-0.42878	-0.00021065	0.065264	3.2064E-05	491.2897901718131	32.633	0.83378	32.688	32.395	33.228	0.055309					41	29	2	0	0	0	0.08842	1	6221	6221		61.09	28.304	1	441030			41847	7700	24104	24105	51231	51231					0.07442046822893644
SALHIAIEK	9	Unmodified	_SALHIAIEK_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.29010009765625	2	491.290017	980.565481	0.3575	0.00017564	-0.0050484	-2.4802E-06	0.35245	0.00017316	491.28984813734587	32.616	0.51458	32.671	32.441	32.956	0.054375					37	18	3	0	0	0	0.015535	1	6236	6236		70.929	27.07	1	301900			41848	7700	24104	24105	51232	51232					0.07442046822893644
SALHSHDI	8	Unmodified	_SALHSHDI_					0	0	0			REV__ENSG00000214929|ENST00000344803|SPATA31D1	REV__ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.1614074707031	2	440.219591	878.42463	-0.20797	-9.1552E-05	0.81551	0.000359	0.60755	0.00026745	440.2198717761049	18.506	0.76429	18.448	18.313	19.077	-0.058174					41	26	2	0	0	0	0.34353	1	1978	1978		4.756	0.81161	1	67332	+		41849	19068	24105	24106	51233	51233					-0.01944531830520191
SALHSHDI	8	Unmodified	_SALHSHDI_					0	0	0			REV__ENSG00000214929|ENST00000344803|SPATA31D1	REV__ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	440.219591	878.42463	-0.045681	-2.0109E-05	0.14861	6.5422E-05	0.10293	4.5312E-05	440.21966744389533	18.475	0.56513	18.475	18.299	18.864	0	-0.02695	-0.00027176	NaN	4.756	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47405	+		41850	19068	24105	24106							-0.01944531830520191
SALHYAVEL	9	Unmodified	_SALHYAVEL_					0	0	0		ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.28558349609375	2	501.766374	1001.5182	0.12453	6.2487E-05	0.21779	0.00010928	0.34232	0.00017177	501.766495423274	27.354	0.85283	27.343	27.014	27.867	-0.011562					46	29	2	0	0	0	0.25066	1	4581	4581		11.64	4.3511	1	92854			41851	756	24106	24107	51234	51234					0.01749767551905279
SALHYILRI	9	Unmodified	_SALHYILRI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1;nc|ENSG00000116260|O00391-2|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.279541015625	2	543.326934	1084.63931	0.72221	0.0003924	-0.63293	-0.00034389	0.089279	4.8508E-05	543.3262478429797	54.046	0.35606	54.046	53.884	54.24	0					18	12	2	0	0	0	0.19686	1	12833	12833		31.268	12.011	1	216390			41852	2719	24107	24108	51235	51235					0.10038014985207155
SALHYILRI	9	Unmodified	_SALHYILRI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1;nc|ENSG00000116260|O00391-2|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2797241210938	2	543.326934	1084.63931	0.60444	0.00032841	-0.63598	-0.00034554	-0.031537	-1.7135E-05	543.3260927481255	53.941	0.39619	53.998	53.869	54.265	0.056255					18	14	2	0	0	0	0.21538	1	12798	12798		26.268	5.8145	1	286930			41853	2719	24107	24108	51236	51236					0.10038014985207155
SALHYILRI	9	Unmodified	_SALHYILRI_					0	0	0		ENSG00000116260|ENST00000367602|QSOX1;nc|ENSG00000116260|O00391-2|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	ENSG00000116260|ENST00000367602|QSOX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2796020507812	2	543.326934	1084.63931	0.75448	0.00040993	-0.76844	-0.00041752	-0.013966	-7.5878E-06	543.3262016584332	54.248	0.3035	54.232	54.085	54.389	-0.015923					16	10	2	0	0	0	0.21538	1	12885	12885		26.268	7.895	1	317340			41854	2719	24107	24108	51237	51237					0.10038014985207155
SALIDNDAA	9	Unmodified	_SALIDNDAA_					0	0	0		nc|ENSG00000105983|Q8WVP7-2|LMBR1;ENST00000434503.5_1_7:156480878-156685794:-|nuORF;ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1	nc|ENSG00000105983|Q8WVP7-2|LMBR1	nc|ENSG00000105983|Q8WVP7-2|LMBR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.2171325683594	2	445.216714	888.418876	0.28259	0.00012581	-0.017396	-7.7448E-06	0.26519	0.00011807	445.216985937294	38.25	0.99842	38.348	37.953	38.951	0.097527					85	35	4	0	0	0	0.14786	1	7933	7933		31.268	0.6318	1	1555800			41855	2044	24108	24109	51238	51238					-0.029796751328603932
SALKGKSHK	9	Unmodified	_SALKGKSHK_					0	0	0		ENST00000481896.1_1_X:8503574-8504959:-|nuORF;ENSG00000011201|ENST00000262648|ANOS1	ENST00000481896.1_1_X:8503574-8504959:-|nuORF	ENST00000481896.1_1_X:8503574-8504959:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.28753662109375	2	478.287808	954.561064	0.050815	2.4304E-05	1.0417	0.00049824	1.0925	0.00052254	478.2876787321859	17.13	1.0649	17.013	16.692	17.757	-0.11739					90	37	3	0	0	0	0.20626	1	1575	1575		22.736	0	1	322290			41856	436	24109	24110	51239	51239					0.08196582399989438
SALLQHRGVH	10	Unmodified	_SALLQHRGVH_					0	0	0		ENSG00000179909|ENST00000684351|ZNF154	ENSG00000179909|ENST00000684351|ZNF154	ENSG00000179909|ENST00000684351|ZNF154	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.78955078125	2	559.314889	1116.61522	0.21488	0.00012019	-0.44958	-0.00025146	-0.2347	-0.00013127	559.3146512372649	17.527	0.52498	17.467	17.241	17.766	-0.060429					28	17	2	0	0	0	0.32072	1	1612	1612		2.9952	0.69251	1	58657			41857	7151	24110	24111	51240	51240					0.06158174551569573
SALMGLITTV	10	Unmodified	_SALMGLITTV_					0	0	0			REV__ENSG00000173530|ENST00000312584|TNFRSF10D	REV__ENSG00000173530|ENST00000312584|TNFRSF10D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.32635498046875	2	503.286085	1004.55762	0.36134	0.00018186	-0.97293	-0.00048966	-0.61158	-0.0003078	503.28544797025273	62.823	0.4025	62.823	62.637	63.039	0					27	14	2	0	0	0	0.27337	1	15523	15523		22.736	2.2827	1	437890	+		41858	17785	24111	24112	51241	51241					0.05552151511096781
SALMGLITTV	10	Unmodified	_SALMGLITTV_					0	0	0			REV__ENSG00000173530|ENST00000312584|TNFRSF10D	REV__ENSG00000173530|ENST00000312584|TNFRSF10D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.8008117675781	2	503.286085	1004.55762	0.39356	0.00019807	-2.3728	-0.0011942	-1.9793	-0.00099613	503.2849642864311	62.942	0.9094	63.038	62.602	63.511	0.095722					60	32	2	0	0	0	0.15473	1	15549	15549		38.176	0.20157	1	379830	+		41859	17785	24111	24112	51242	51242					0.05552151511096781
SALMGLITTV	10	Unmodified	_SALMGLITTV_					0	0	0			REV__ENSG00000173530|ENST00000312584|TNFRSF10D	REV__ENSG00000173530|ENST00000312584|TNFRSF10D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.8011474609375	2	503.286085	1004.55762	0.29018	0.00014604	-0.74061	-0.00037274	-0.45043	-0.0002267	503.2856926537803	62.783	0.48132	62.774	62.57	63.051	-0.0085526					32	17	2	0	0	0	0.2811	1	15566	15566		22.736	2.2827	1	421870	+		41860	17785	24111	24112	51243	51243					0.05552151511096781
SALNFPFAR	9	Unmodified	_SALNFPFAR_					0	0	0		nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3;ENST00000608648.1_1_19:18220994-18239762:+|nuORF	nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000099308|O60307|MAST3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.7746887207031	2	511.774534	1021.53451	0.43477	0.0002225	-0.2138	-0.00010942	0.22097	0.00011309	511.7743119238335	58.555	0.75207	58.555	58.216	58.968	0					57	25	3	0	0	0	0.0041491	1	14220	14220		93.166	57.039	1	1045100			41861	1482	24112	24113	51244	51244					0.02460893508657591
SALNFPFAR	9	Unmodified	_SALNFPFAR_					0	0	0		nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3;ENST00000608648.1_1_19:18220994-18239762:+|nuORF	nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000099308|O60307|MAST3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.7745666503906	2	511.774534	1021.53451	0.30684	0.00015703	-0.3078	-0.00015753	-0.00096467	-4.9369E-07	511.7742638693689	58.366	0.78438	58.456	58.143	58.927	0.09042					62	27	3	0	0	0	0.067563	1	14164	14164		66.457	37.97	1	936450			41862	1482	24112	24113	51245	51245					0.02460893508657591
SALNFPFAR	9	Unmodified	_SALNFPFAR_					0	0	0		nc|ENSG00000099308|O60307|MAST3;ENSG00000099308|ENST00000687212|MAST3;ENST00000608648.1_1_19:18220994-18239762:+|nuORF	nc|ENSG00000099308|O60307|MAST3	nc|ENSG00000099308|O60307|MAST3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.774658203125	2	511.774534	1021.53451	0.546	0.00027943	-0.4696	-0.00024033	0.076401	3.91E-05	511.774208031001	58.599	0.61115	58.584	58.278	58.889	-0.014267					52	21	3	0	0	0	0.0016712	2	14211	14211;14261		114.2	72.107	1	1067100			41863	1482	24112	24113	51246;51247	51246					0.02460893508657591
SALPDWPGPA	10	Unmodified	_SALPDWPGPA_					0	0	0			REV__nc|ENSG00000105993|O75190-4|DNAJB6	REV__nc|ENSG00000105993|O75190-4|DNAJB6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.74298095703125	2	505.750724	1009.4869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.916	1	27.917	27.417	28.417	0.0004673								0	0	0	0.36126	1	4799	4799		10.074	0.6908	1		+		41864	14499	24113	24114	51248	51248					-0.017468054821961232
SALQEPNVL	9	Unmodified	_SALQEPNVL_					0	0	0			REV__ENSG00000023445|ENST00000263464|BIRC3	REV__ENSG00000023445|ENST00000263464|BIRC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80023193359375	2	485.763832	969.513111	0.33364	0.00016207	0.86311	0.00041927	1.1968	0.00058134	485.7644342220727	42.978	0.53926	43.063	42.922	43.461	0.085201					30	19	2	0	0	0	0.2322	1	9476	9476		10.074	2.7847	1	505010	+		41865	13471	24114	24115	51249	51249					0.027134636892810704
SALQEPNVL	9	Unmodified	_SALQEPNVL_					0	0	0			REV__ENSG00000023445|ENST00000263464|BIRC3	REV__ENSG00000023445|ENST00000263464|BIRC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002014160156	2	485.763832	969.513111	0.12913	6.2726E-05	0.60589	0.00029432	0.73502	0.00035705	485.7644226666881	43.01	0.56463	43.101	42.853	43.417	0.091362					44	20	4	0	0	0	0.2322	1	9420	9420		14.838	0	1	487750	+		41866	13471	24114	24115	51250	51250					0.027134636892810704
SALQKKLI	8	Unmodified	_SALQKKLI_					0	0	0			REV__nc|ENSG00000197826|Q6V702-1|CFAP299	REV__nc|ENSG00000197826|Q6V702-1|CFAP299	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2479553222656	2	450.797478	899.580402	0.026801	1.2082E-05	0.22989	0.00010364	0.2567	0.00011572	450.79755414476756	28.782	0.30991	28.783	28.661	28.971	0.0004673					15	10	2	0	0	0	0.34247	1	5042	5042		4.756	0	1	82512	+		41867	23158	24115	24116	51251	51251					0.12659538690911631
SALQSLVK	8	Unmodified	_SALQSLVK_					0	0	0		ENSG00000183628|ENST00000331444|DGCR6;nc|ENSG00000183628|Q14129-2|DGCR6;ENSG00000128185|ENST00000248879|DGCR6L	ENSG00000183628|ENST00000331444|DGCR6	ENSG00000183628|ENST00000331444|DGCR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.55450439453125	2	423.258185	844.501818	-0.24268	-0.00010272	0.47973	0.00020305	0.23705	0.00010033	423.25838353002183	23.361	0.62698	23.361	23.173	23.8	0					36	21	2	0	0	0	0.34414	1	3371	3371		2.0598	0	1	80849			41868	7383	24116	24117	51252	51252					0.07334686385820532
SALRDINP	8	Unmodified	_SALRDINP_					0	0	0			REV__ENSG00000101846|ENST00000674429|STS;REV__ENSG00000205667|ENST00000381130|ARSH	REV__ENSG00000101846|ENST00000674429|STS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.71807861328125	2	443.243067	884.47158	0.41226	0.00018273	-0.087575	-3.8817E-05	0.32469	0.00014392	443.2429752117947	20.607	0.37249	20.497	20.407	20.779	-0.11003					17	12	2	0	0	0	0.34117	1	2617	2617		13.906	0	1	47515	+		41869	14289;18996	24117	24118	51253	51253					0.024723277206135208
SALRSGEVF	9	Unmodified	_SALRSGEVF_					0	0	0		nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2;ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1	nc|ENSG00000146122|Q86T65-4|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2565002441406	2	483.256174	964.497795	0.0059079	2.855E-06	0.68941	0.00033316	0.69532	0.00033602	483.25642082908263	31.413	0.52176	31.455	31.13	31.652	0.042366					46	18	3	0	0	0	0.23767	1	5842	5842		18.146	0.011366	1	835340			41870	4693	24118	24119	51254	51254					0.014125968921121057
SALTDKAIVKK	11	Unmodified	_SALTDKAIVKK_					0	0	0		ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENSG00000176485|ENST00000415826|PLAAT3	ENSG00000176485|ENST00000415826|PLAAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.3638916015625	2	587.363713	1172.71287	0.47813	0.00028084	-0.502	-0.00029486	-0.023863	-1.4016E-05	587.3635476937224	20.771	0.62691	20.771	20.542	21.169	0					44	21	3	0	0	0	0.0086212	1	2631	2631		72.59	47.708	1	248160			41871	6933	24119	24120	51255	51255					0.13342518637023204
SALTDKAIVKK	11	Unmodified	_SALTDKAIVKK_					0	0	0		ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENSG00000176485|ENST00000415826|PLAAT3	ENSG00000176485|ENST00000415826|PLAAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.36376953125	2	587.363713	1172.71287	0.58862	0.00034574	-0.49512	-0.00029081	0.093506	5.4922E-05	587.3635399157336	21.001	0.45458	20.891	20.666	21.121	-0.11003					39	15	3	0	0	0	0.012354	2	2728	2728;2764		64.692	44.111	1	280640			41872	6933	24119	24120	51256;51257	51256					0.13342518637023204
SALTDKAIVKK	11	Unmodified	_SALTDKAIVKK_					0	0	0		ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF	ENSG00000176485|ENST00000415826|PLAAT3	ENSG00000176485|ENST00000415826|PLAAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.3639526367188	2	587.363713	1172.71287	0.55198	0.00032421	-0.42143	-0.00024753	0.13055	7.6681E-05	587.3635385630267	20.868	0.64888	20.816	20.584	21.233	-0.052912					53	22	4	0	0	0	0.036299	2	2664	2664;2718		57.204	37.578	1	253310			41873	6933	24119	24120	51258;51259	51258					0.13342518637023204
SALTIQLIQN	10	Unmodified	_SALTIQLIQN_					0	0	0		ENSG00000133703|ENST00000311936|KRAS;nc|ENSG00000174775|P01112-2|HRAS;nc|ENSG00000133703|P01116|KRAS;ENSG00000213281|ENST00000369535|NRAS;ENSG00000174775|ENST00000311189|HRAS	ENSG00000133703|ENST00000311936|KRAS	ENSG00000133703|ENST00000311936|KRAS	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.8303833007812	2	550.819138	1099.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.448	1	12.448	11.948	12.948	0								0	0	0	0.38166	1	129	129		1.4819	0	1				41874	3724	24120	24121	51260	51260					0.0778968367753805
SALVQGDSTL	10	Unmodified	_SALVQGDSTL_					0	0	0			REV__ENSG00000015520|ENST00000381160|NPC1L1	REV__ENSG00000015520|ENST00000381160|NPC1L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7768859863281	2	495.758746	989.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.473	1	38.571	38.071	39.071	0.097527								0	0	0	0.32814	1	8017	8017		24.021	0	1		+		41875	13452	24121	24122	51261	51261					0.007768559640567219
SALWLLGVIFF	11	Unmodified	_SALWLLGVIFF_					0	0	0			REV__ENSG00000146433|ENST00000684151|TMEM181	REV__ENSG00000146433|ENST00000684151|TMEM181	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3682250976562	2	633.368267	1264.72198	0.55417	0.00035099	0.63492	0.00040214	1.1891	0.00075313	633.3685264078376	94.881	0.79994	94.879	94.349	95.149	-0.0020142					98	69	2	0	0	0	0.46059	1	25365	25365		3.2813	0	1	173060	+		41876	16350	24122	24123	51262	51262					0.10020911993365189
SAMALMCASLM	11	Unmodified	_SAMALMCASLM_					0	0	0			REV__ENST00000492807.6_1_6:146720717-146755929:+|nuORF	REV__ENST00000492807.6_1_6:146720717-146755929:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.2652587890625	2	564.749641	1127.48473	0.41338	0.00023345	1.3326	0.00075261	1.746	0.00098606	564.7504118823365	74.507	0.60238	74.477	74.211	74.813	-0.030663					31	20	2	0	0	0	0.35522	1	19098	19098		17.113	4.5813	1	396460	+		41877	21627	24123	24124	51263	51263					-0.07391384869833928
SAMESFIEK	9	Oxidation (M)	_SAM(Oxidation (M))ESFIEK_		SAM(1)ESFIEK		SAM(94)ESFIEK	0	0	1		ENSG00000120451|ENST00000265909|SNX19;ENST00000527451.1_1_11:130773148-130776010:-|nuORF	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2471923828125	2	529.247157	1056.47976	0.66529	0.0003521	-0.58719	-0.00031077	0.078096	4.1332E-05	529.2468046020488	29.705	0.67867	29.705	29.385	30.064	0					41	23	2	0	0	0	0.0040516	2	5317	5317;5367		93.938	33.958	1	695840			41878	2944	24124	24125	51264;51265	51264		371			-0.04621906144939203
SAMESFIEK	9	Oxidation (M)	_SAM(Oxidation (M))ESFIEK_		SAM(1)ESFIEK		SAM(90)ESFIEK	0	0	1		ENSG00000120451|ENST00000265909|SNX19;ENST00000527451.1_1_11:130773148-130776010:-|nuORF	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2471313476562	2	529.247157	1056.47976	0.44941	0.00023785	-0.41805	-0.00022125	0.031354	1.6594E-05	529.2468894433033	29.634	0.95148	29.646	29.08	30.032	0.012266					65	32	3	0	0	0	0.0045319	2	5347	5294;5347		90.135	33.958	1	631690			41879	2944	24124	24125	51266;51267	51267		371			-0.04621906144939203
SAMESFIEK	9	Oxidation (M)	_SAM(Oxidation (M))ESFIEK_		SAM(1)ESFIEK		SAM(90)ESFIEK	0	0	1		ENSG00000120451|ENST00000265909|SNX19;ENST00000527451.1_1_11:130773148-130776010:-|nuORF	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2472534179688	2	529.247157	1056.47976	0.26705	0.00014134	-0.1882	-9.9603E-05	0.078857	4.1735E-05	529.247059776933	29.666	0.83412	29.679	29.14	29.974	0.013474					66	28	4	0	0	0	0.0045319	2	5350	5297;5350		90.135	35.621	1	707300			41880	2944	24124	24125	51268;51269	51269		371			-0.04621906144939203
SANHNILQI	9	Unmodified	_SANHNILQI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000477112.1_1_22:38890609-38891019:-|nuORF;ENST00000581551.1_1_17:62499042-62499524:-|nuORF;ENST00000497196.5_1_22:38889517-38891019:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000100201|Q92841-1|DDX17	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.27490234375	2	505.274898	1008.53524	0.46723	0.00023608	-0.04285	-2.1651E-05	0.42438	0.00021443	505.27485354670796	44.456	0.8636	44.456	44.206	45.069	0					62	31	3	0	0	0	0.11461	1	9894	9894		36.127	0	1	1182400			41881	2205;1544	24125	24126	51270	51270					0.03131688157714052
SANHNILQI	9	Unmodified	_SANHNILQI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000477112.1_1_22:38890609-38891019:-|nuORF;ENST00000581551.1_1_17:62499042-62499524:-|nuORF;ENST00000497196.5_1_22:38889517-38891019:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000100201|Q92841-1|DDX17	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2750549316406	2	505.274898	1008.53524	0.4342	0.00021939	0.19945	0.00010078	0.63365	0.00032017	505.27489616732225	44.242	0.64283	44.311	44.039	44.682	0.068569					55	23	3	0	0	0	0.010453	2	9770	9770;9863		78.728	10.647	1	1300000			41882	2205;1544	24125	24126	51271;51272	51271					0.03131688157714052
SANHNILQI	9	Unmodified	_SANHNILQI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000477112.1_1_22:38890609-38891019:-|nuORF;ENST00000581551.1_1_17:62499042-62499524:-|nuORF;ENST00000497196.5_1_22:38889517-38891019:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000100201|Q92841-1|DDX17	ENSG00000108654|ENST00000225792|DDX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2750244140625	2	505.274898	1008.53524	0.31864	0.000161	0.2583	0.00013051	0.57695	0.00029152	505.2749305475111	44.181	0.68296	44.256	44.04	44.723	0.075047					52	24	3	0	0	0	0.034444	1	9791	9791		58.679	6.4105	1	1321100			41883	2205;1544	24125	24126	51273	51273					0.03131688157714052
SANHNILQI	9	Unmodified	_SANHNILQI_					0	0	0		ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000477112.1_1_22:38890609-38891019:-|nuORF;ENST00000581551.1_1_17:62499042-62499524:-|nuORF;ENST00000497196.5_1_22:38889517-38891019:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17	ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000100201|Q92841-1|DDX17	ENSG00000108654|ENST00000225792|DDX5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	505.274898	1008.53524	0.46723	0.00023608	-0.04285	-2.1651E-05	0.42438	0.00021443	505.27485354670796	44.456	0.8636	44.456	44.206	45.069	0	0.11483	-0.00019068	NaN	78.728	62	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1182400			41884	2205;1544	24125	24126							0.03131688157714052
SANPQWQEQF	10	Unmodified	_SANPQWQEQF_					0	0	0		MCTP2|p.N603Ifs*5|1|0.36|ENSG00000140563|chr15:94398979-94398979|A/-|frameshift_variant;ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2	MCTP2|p.N603Ifs*5|1|0.36|ENSG00000140563|chr15:94398979-94398979|A/-|frameshift_variant	MCTP2|p.N603Ifs*5|1|0.36|ENSG00000140563|chr15:94398979-94398979|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.52838134765625	3	412.18776	1233.54145	0.11803	4.8651E-05	0.4605	0.00018981	0.57854	0.00023847	412.52211175434763	19.391	0.554	19.275	19.058	19.612	-0.11592					38	18	3	0	0	0	0.32132	1	2193	2193		0.62683	0	1	63873			41885	4319	24126	24127	51274	51274					-0.06597838401444278
SANPQWQEQF	10	Unmodified	_SANPQWQEQF_					0	0	0		MCTP2|p.N603Ifs*5|1|0.36|ENSG00000140563|chr15:94398979-94398979|A/-|frameshift_variant;ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2	MCTP2|p.N603Ifs*5|1|0.36|ENSG00000140563|chr15:94398979-94398979|A/-|frameshift_variant	MCTP2|p.N603Ifs*5|1|0.36|ENSG00000140563|chr15:94398979-94398979|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	412.18776	1233.54145	-0.25241	-0.00010404	0.7014	0.00028911	0.44899	0.00018507	412.5224519032668	19.248	0.56768	19.248	19.006	19.574	0	-0.0098751	2.5085E-05	NaN	0.62683	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76522			41886	4319	24126	24127							-0.06597838401444278
SANQQNILK	9	Unmodified	_SANQQNILK_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.23260498046875	2	508.28018	1014.54581	0.27951	0.00014207	0.060224	3.0611E-05	0.33973	0.00017268	508.2803170309777	21.902	0.53232	21.902	21.627	22.16	0					27	19	2	0	0	0	0.12329	1	2974	2974		41.956	15.072	1	109100			41887	2239	24127	24128	51275	51275					0.039116708121468946
SANQQNILK	9	Unmodified	_SANQQNILK_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2803649902344	2	508.28018	1014.54581	0.30718	0.00015613	0.043989	2.2359E-05	0.35117	0.00017849	508.28030799174536	21.947	0.43647	21.847	21.608	22.045	-0.10034					23	15	2	0	0	0	0.088443	1	3009	3009		39.95	15.276	1	184430			41888	2239	24127	24128	51276	51276					0.039116708121468946
SANRHSLMV	9	Oxidation (M)	_SANRHSLM(Oxidation (M))V_		SANRHSLM(1)V		SANRHSLM(53)V	0	0	1		ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;ENST00000562680.5_1_18:52899738-53018213:-|nuORF	ENSG00000196628|ENST00000354452|TCF4	ENSG00000196628|ENST00000354452|TCF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7584838867188	2	515.758558	1029.50256	0.2231	0.00011506	-0.17456	-9.003E-05	0.048538	2.5034E-05	515.7583720957431	18.093	0.66945	18.093	17.835	18.505	0					52	22	3	0	0	0	0.11018	1	1844	1844		53.404	26.52	1	265650			41889	7888	24128	24129	51277	51277		859			-0.011008422367922321
SANRHSLMV	9	Oxidation (M)	_SANRHSLM(Oxidation (M))V_		SANRHSLM(1)V		SANRHSLM(40)V	0	0	1		ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-11|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-6|TCF4;ENST00000562680.5_1_18:52899738-53018213:-|nuORF	ENSG00000196628|ENST00000354452|TCF4	ENSG00000196628|ENST00000354452|TCF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.7584228515625	2	515.758558	1029.50256	-0.066151	-3.4118E-05	0.25797	0.00013305	0.19182	9.8934E-05	515.7585580444342	18.305	0.70087	18.247	17.953	18.654	-0.058174					54	24	3	0	0	0	0.086462	1	1908	1908		40.239	13.356	1	286830			41890	7888	24128	24129	51278	51278		859			-0.011008422367922321
SAPEVLLV	8	Unmodified	_SAPEVLLV_					0	0	0		nc|ENSG00000110171|O75382-4|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3	nc|ENSG00000110171|O75382-4|TRIM3	nc|ENSG00000110171|O75382-4|TRIM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.24725341796875	2	414.247286	826.48002	0.30724	0.00012727	-0.060988	-2.5264E-05	0.24625	0.00010201	414.24718247000976	64.828	0.93616	64.92	64.391	65.327	0.09288					54	34	2	0	0	0	0.073545	1	16153	16153		67.035	10.494	1	382110			41891	2299	24129	24130	51279	51279					0.059838816372462134
SAPEVLLV	8	Unmodified	_SAPEVLLV_					0	0	0		nc|ENSG00000110171|O75382-4|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3	nc|ENSG00000110171|O75382-4|TRIM3	nc|ENSG00000110171|O75382-4|TRIM3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	414.247286	826.48002	0.10189	4.2208E-05	1.2206	0.00050564	1.3225	0.00054785	414.24726107984293	64.92	0.76846	64.909	64.551	65.319	-0.01133	-0.018189	0.00087811	NaN	67.035	51	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438630			41892	2299	24129	24130							0.059838816372462134
SAPHQNLVL	9	Unmodified	_SAPHQNLVL_					0	0	0			REV__nc|ENSG00000096696|P15924-2|DSP	REV__nc|ENSG00000096696|P15924-2|DSP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2980041503906	2	489.771991	977.529429	0.097134	4.7574E-05	0.57184	0.00028007	0.66897	0.00032764	489.7721682492551	15.096	0.38617	14.986	14.789	15.176	-0.10982					24	13	2	0	0	0	0.25988	1	934	934		3.9444	0.3479	1	94165	+		41893	14116	24130	24131	51280	51280					0.03976589646026696
SAPLLLHTLER	11	Unmodified	_SAPLLLHTLER_					0	0	0			REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.3655395507812	2	625.366787	1248.71902	-0.0041698	-2.6076E-06	-0.56352	-0.00035241	-0.56769	-0.00035501	625.3663350139633	98.222	0.3786	98.222	98.084	98.462	0					75	44	2	0	0	0	0.46704	3	26270	26270;26305;26321		5.2969	3.2371	1	243430	+		41894	21579	24131	24132	51281;51282;51283	51281					0.10461036868559859
SAPLLLHTLER	11	Unmodified	_SAPLLLHTLER_					0	0	0			REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.8745727539062	2	625.366787	1248.71902	-0.0041698	-2.6076E-06	-0.56352	-0.00035241	-0.56769	-0.00035501	625.3663350139633	98.222	0.3786	98.222	98.084	98.462	0					75	44	2	0	0	0	0.33303	1	26268	26268		5.2969	5.2969	1	243430	+		41895	21579	24131	24132	51284	51284					0.10461036868559859
SAPLLLHTLER	11	Unmodified	_SAPLLLHTLER_					0	0	0			REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.8680419921875	2	625.366787	1248.71902	-0.1554	-9.7181E-05	0.054025	3.3786E-05	-0.10137	-6.3396E-05	625.3668903338062	98.199	0.37744	98.261	98.06	98.438	0.061516					80	42	3	0	0	0	0.46704	1	26288	26288		5.2969	2.0156	1	459080	+		41896	21579	24131	24132	51285	51285					0.10461036868559859
SAPLLLHTLER	11	Unmodified	_SAPLLLHTLER_					0	0	0			REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	REV__ENST00000543187.5_1_12:7168132-7170034:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.36767578125	2	625.366787	1248.71902	0.16093	0.00010064	-0.47297	-0.00029578	-0.31204	-0.00019514	625.3663374710434	98.302	0.41965	98.295	98.075	98.494	-0.0068283					110	47	3	0	0	0	0.46704	1	26345	26345		5.2969	2.0156	1	697460	+		41897	21579	24131	24132	51286	51286					0.10461036868559859
SAPRASVTP	9	Unmodified	_SAPRASVTP_					0	0	0		ENST00000527277.5_1_11:65634045-65634292:-|nuORF;ENST00000307998.10_1_11:65634045-65634324:-|nuORF	ENST00000527277.5_1_11:65634045-65634292:-|nuORF	ENST00000527277.5_1_11:65634045-65634292:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7181091308594	2	443.243067	884.47158	0.25363	0.00011242	-0.18086	-8.0164E-05	0.072775	3.2257E-05	443.2429651026392	20.24	0.36211	20.24	20.18	20.542	0					17	12	2	0	0	0	0.25123	1	2507	2507		12.241	0	1	55167			41898	9281	24132	24133	51287	51287					0.024723277206248895
SAPRGRRVF	9	Unmodified	_SAPRGRRVF_					0	0	0		ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3037719726562	2	523.304324	1044.5941	0.4011	0.0002099	-0.032468	-1.699E-05	0.36863	0.00019291	523.3034486081347	75.393	0.9416	75.393	74.962	75.903	0					125	33	5	0	0	0	0.31417	1	19413	19413		6.7232	0	1	940740			41899	4006	24133	24134	51288	51288					0.07358209242693192
SAPRGRRVF	9	Unmodified	_SAPRGRRVF_					0	0	0		ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.303955078125	2	523.304324	1044.5941	0.40746	0.00021322	-0.64491	-0.00033748	-0.23745	-0.00012426	523.3035630147534	76.049	1.1371	76.102	75.052	76.189	0.053413					140	41	5	0	0	0	0.33018	1	19525	19525		4.3292	0	1	2005200			41900	4006	24133	24134	51289	51289					0.07358209242693192
SAQFRLIE	8	Unmodified	_SAQFRLIE_					0	0	0			REV__ENSG00000124602|ENST00000244565|UNC5CL	REV__ENSG00000124602|ENST00000244565|UNC5CL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.2666015625	2	482.266542	962.51853	-0.036075	-1.7398E-05	0.3519	0.00016971	0.31583	0.00015231	482.26667966269923	18.33	0.84142	18.271	18.004	18.846	-0.058172					40	29	2	0	0	0	0.46092	1	1981	1981		2.0598	0	1	58209	+		41901	15243	24134	24135	51290	51290					0.03577187271764615
SAQGNVYVK	9	Unmodified	_SAQGNVYVK_					0	0	0		ENST00000496183.5_1_20:34292405-34295154:-|nuORF;ENST00000397254.2_1_X:43889279-43890164:+|nuORF;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.25604248046875	2	483.256174	964.497795	0.0038524	1.8617E-06	-0.085051	-4.1102E-05	-0.081199	-3.924E-05	483.2560606441129	18.987	0.8885	18.987	18.738	19.627	0					68	31	4	0	0	0	0.011436	1	2086	2086		90.135	36.302	1	437580			41902	3539	24135	24136	51291	51291					0.014125968920893683
SAQGNVYVK	9	Unmodified	_SAQGNVYVK_					0	0	0		ENST00000496183.5_1_20:34292405-34295154:-|nuORF;ENST00000397254.2_1_X:43889279-43890164:+|nuORF;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2560729980469	2	483.256174	964.497795	0.083365	4.0287E-05	-0.032525	-1.5718E-05	0.05084	2.4569E-05	483.2560781340839	19.165	0.76694	19.049	18.812	19.579	-0.11592					60	26	3	0	0	0	0.0066897	1	2131	2131		80.676	20.602	1	449790			41903	3539	24135	24136	51292	51292					0.014125968920893683
SAQGNVYVK	9	Unmodified	_SAQGNVYVK_					0	0	0		ENST00000496183.5_1_20:34292405-34295154:-|nuORF;ENST00000397254.2_1_X:43889279-43890164:+|nuORF;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-3|RBM39;nc|ENSG00000131051|Q14498-2|RBM39;ENSG00000131051|ENST00000253363|RBM39	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	ENST00000496183.5_1_20:34292405-34295154:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2560119628906	2	483.256174	964.497795	0.095312	4.606E-05	-0.12379	-5.9822E-05	-0.028477	-1.3762E-05	483.25605192937667	19.072	0.77832	19.014	18.763	19.542	-0.058172					66	26	3	0	0	0	0.0043179	1	2113	2113		110.79	59.163	1	394460			41904	3539	24135	24136	51293	51293					0.014125968920893683
SAQHFKVLKW	10	Unmodified	_SAQHFKVLKW_					0	0	0			REV__ENST00000554745.1_1_14:52037074-52110223:+|nuORF	REV__ENST00000554745.1_1_14:52037074-52110223:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.9161682128906	3	415.236385	1242.68733	-0.86448	-0.00035896	2.7783	0.0011537	1.9138	0.00079469	415.2373913210628	35.135	0.57529	35.135	34.917	35.492	0					31	20	2	0	0	0	0.31651	1	7079	7079		7.9454	0	1	181920	+		41905	22236	24136	24137	51294	51294					0.07569088905256649
SAQIISATA	9	Unmodified	_SAQIISATA_					0	0	0		nc|ENSG00000197905|Q15561-2|TEAD4;ENSG00000197905|ENST00000359864|TEAD4	nc|ENSG00000197905|Q15561-2|TEAD4	nc|ENSG00000197905|Q15561-2|TEAD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8881530761719	2	431.23745	860.460347	-0.0037655	-1.6238E-06	0.078483	3.3845E-05	0.074717	3.2221E-05	431.23745066178054	20.511	1.0466	20.511	20.207	21.254	0					61	36	2	0	0	0	0.20881	1	2591	2591		27.629	0	1	153020			41906	8013	24137	24138	51295	51295					0.024535056264653576
SAQIISATA	9	Unmodified	_SAQIISATA_					0	0	0		nc|ENSG00000197905|Q15561-2|TEAD4;ENSG00000197905|ENST00000359864|TEAD4	nc|ENSG00000197905|Q15561-2|TEAD4	nc|ENSG00000197905|Q15561-2|TEAD4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	431.23745	860.460347	0.23342	0.00010066	0.023035	9.9334E-06	0.25645	0.00011059	431.2374074902202	20.784	1.1392	20.674	20.215	21.355	-0.11003	0.079557	-4.0565E-05	NaN	27.629	60	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141840			41907	8013	24137	24138							0.024535056264653576
SAQIISATA	9	Unmodified	_SAQIISATA_					0	0	0		nc|ENSG00000197905|Q15561-2|TEAD4;ENSG00000197905|ENST00000359864|TEAD4	nc|ENSG00000197905|Q15561-2|TEAD4	nc|ENSG00000197905|Q15561-2|TEAD4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	431.23745	860.460347	0.18375	7.9238E-05	0.092212	3.9765E-05	0.27596	0.000119	431.2374610792869	20.65	0.97954	20.598	20.254	21.233	-0.05291	0.0033221	1.9099E-05	NaN	27.629	59	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143000			41908	8013	24137	24138							0.024535056264653576
SAQKFIELASD	11	Unmodified	_SAQKFIELASD_					0	0	0			REV__ENST00000504411.1_1_5:135396881-135398912:+|nuORF	REV__ENST00000504411.1_1_5:135396881-135398912:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.9292297363281	3	403.543432	1207.60847	-0.21741	-8.7734E-05	-3.6666	-0.0014796	-3.884	-0.0015674	403.54212448562464	42.395	0.32344	42.481	42.295	42.618	0.085197					16	11	2	0	0	0	0.3322	1	9239	9239		4.7159	0.83959	1	97975	+		41909	15093	24138	24139	51296	51296					0.012967720896540413
SAQLHVVKF	9	Unmodified	_SAQLHVVKF_					0	0	0			REV__ENSG00000197121|ENST00000354764|PGAP1	REV__ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.780029296875	2	514.798009	1027.58147	0.44313	0.00022812	-0.54784	-0.00028203	-0.10471	-5.3906E-05	514.7976438045233	40.377	0.70456	40.47	40.2	40.905	0.09267					65	25	4	0	0	0	0.2719	1	8707	8707		13.042	1.4022	1	1607700	+		41910	18711	24139	24140	51297	51297					0.06877753059802671
SAQLLRSK	8	Unmodified	_SAQLLRSK_					0	0	0			REV__nc|ENSG00000253873|Q9Y5H2-2|PCDHGA11;REV__nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;REV__nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;REV__nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10	REV__nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.2346496582031	2	451.774534	901.534515	-0.069582	-3.1435E-05	-1.1061	-0.00049971	-1.1757	-0.00053114	451.7740613835974	15.487	0.30561	15.487	15.319	15.624	0					16	9	2	0	0	0	0.34378	1	1017	1017		3.9444	0	1	31550	+		41911	19231;13910;18975;19227;19230	24140	24141	51298	51298					0.07980893508658937
SAQLPVDP	8	Unmodified	_SAQLPVDP_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2176513671875	2	413.718893	825.423233	0.29027	0.00012009	1.4814	0.00061289	1.7717	0.00073298	413.72002257906917	77.721	0.91562	77.721	77.117	78.033	0					51	33	2	0	0	0	0.3366	1	20040	20040		18.135	0	1	164680	+		41912	18519	24141	24142	51299	51299					0.0035383408071538724
SAQNTKFFK	9	Unmodified	_SAQNTKFFK_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2696533203125	2	535.785099	1069.55564	0.48173	0.0002581	-0.58599	-0.00031396	-0.10425	-5.5858E-05	535.7849082239719	21.705	0.58597	21.705	21.431	22.017	0					50	21	3	0	0	0	0.07944	1	2951	2951		41.956	22.594	1	174490			41913	4287	24142	24143	51300	51300					0.023648588175319674
SAQNTKFFK	9	Unmodified	_SAQNTKFFK_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2698974609375	2	535.785099	1069.55564	0.4082	0.00021871	-0.38572	-0.00020666	0.022481	1.2045E-05	535.7849655244144	21.769	0.68131	21.668	21.392	22.074	-0.10034					50	24	3	0	0	0	0.053988	1	2974	2974		51.415	26.424	1	188000			41914	4287	24142	24143	51301	51301					0.023648588175319674
SAQNTKFFK	9	Unmodified	_SAQNTKFFK_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1;ENST00000484386.1_1_15:44097294-44102132:-|nuORF	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2696533203125	2	535.785099	1069.55564	0.42199	0.0002261	-0.48698	-0.00026092	-0.064989	-3.482E-05	535.7849708727393	21.761	0.71509	21.712	21.405	22.12	-0.049377					47	25	3	0	0	0	0.12279	1	2947	2947		34.932	19.684	1	221440			41915	4287	24142	24143	51302	51302					0.023648588175319674
SAQPSLPLYRT	11	Unmodified	_SAQPSLPLYRT_					0	0	0		nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-9|USP54;nc|ENSG00000166348|Q70EL1-10|USP54;nc|ENSG00000166348|Q70EL1-8|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.8355712890625	2	616.83532	1231.65609	0.28159	0.00017369	0.075176	4.6371E-05	0.35676	0.00022006	616.8353403001603	35.938	1.2121	36.02	35.624	36.836	0.082355					119	43	5	0	0	0	0.26738	1	7251	7251		37.075	3.6297	1	8224300			41916	6066	24143	24144	51303	51303					0.04952471080514442
SAQPSLPLYRT	11	Unmodified	_SAQPSLPLYRT_					0	0	0		nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-9|USP54;nc|ENSG00000166348|Q70EL1-10|USP54;nc|ENSG00000166348|Q70EL1-8|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.8355712890625	2	616.83532	1231.65609	0.40151	0.00024766	-0.048542	-2.9942E-05	0.35296	0.00021772	616.8353051348573	35.913	1.1357	35.999	35.73	36.865	0.08625					125	40	5	0	0	0	0.26738	1	7243	7243		37.075	7.2341	1	8295600			41917	6066	24143	24144	51304	51304					0.04952471080514442
SAQQLTNL	8	Unmodified	_SAQQLTNL_					0	0	0			REV__ENST00000580573.1_1_17:45754418-45755781:+|nuORF	REV__ENST00000580573.1_1_17:45754418-45755781:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.5871887207031	2	437.735074	873.455596	-0.12662	-5.5425E-05	-0.46366	-0.00020296	-0.59028	-0.00025839	437.73514921963704	16.239	0.34211	16.239	16.035	16.377	0					15	11	2	0	0	0	0.34419	1	1288	1288		1.8442	0	1	17858	+		41918	14592	24144	24145	51305	51305					0.01380621483701816
SAQRELVAK	9	Unmodified	_SAQRELVAK_					0	0	0			REV__nc|ENSG00000176095|Q92551-2|IP6K1	REV__nc|ENSG00000176095|Q92551-2|IP6K1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.67169189453125	2	501.290548	1000.56654	0.091999	4.6118E-05	0.42205	0.00021157	0.51405	0.00025769	501.29098128788274	15.557	0.5605	15.493	15.275	15.836	-0.064414					28	18	2	0	0	0	0.25843	1	1067	1067		5.7319	0	1	49836	+		41919	17921	24145	24146	51306	51306					0.06628261191804086
SAQSFFENK	9	Unmodified	_SAQSFFENK_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2510375976562	2	529.251089	1056.48762	-0.28225	-0.00014938	0.080944	4.284E-05	-0.2013	-0.00010654	529.2511167687167	35.212	1.237	35.212	34.725	35.962	0					106	44	4	0	0	0	6.4322E-11	1	7044	7044		182.24	123.56	1	3676700			41920	12721	24146	24147	51307	51307					-0.03836010833151704
SAQSFFENK	9	Unmodified	_SAQSFFENK_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2509155273438	2	529.251089	1056.48762	-0.33	-0.00017465	0.13211	6.9919E-05	-0.19789	-0.00010474	529.2511130883098	35.143	1.2082	35.218	34.739	35.947	0.075306					125	43	4	0	0	0	2.6179E-07	2	7035	7035;7088		169.92	119.99	1	3820200			41921	12721	24146	24147	51308;51309	51308					-0.03836010833151704
SAQSFFENK	9	Unmodified	_SAQSFFENK_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2509155273438	2	529.251089	1056.48762	-0.39042	-0.00020663	0.25971	0.00013745	-0.13071	-6.9177E-05	529.2511986556129	35.118	1.3212	35.196	34.704	36.026	0.077381					115	47	4	0	0	0	6.4322E-11	1	7006	7006		182.24	132.3	1	3717200			41922	12721	24146	24147	51310	51310					-0.03836010833151704
SARAIMAQL	9	Oxidation (M)	_SARAIM(Oxidation (M))AQL_		SARAIM(1)AQL		SARAIM(42)AQL	0	0	1		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7658996582031	2	488.765852	975.51715	0.53911	0.0002635	0.023946	1.1704E-05	0.56306	0.0002752	488.76561853404354	32.485	1.1659	32.485	32.119	33.285	0					80	41	3	0	0	0	0.07944	1	6224	6224		41.956	11.319	1	769870			41923	620	24147	24148	51311	51311		73			0.028412299113597328
SARAIMAQL	9	Oxidation (M)	_SARAIM(Oxidation (M))AQL_		SARAIM(1)AQL		SARAIM(48)AQL	0	0	1		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7658996582031	2	488.765852	975.51715	0.59707	0.00029183	-0.18609	-9.0952E-05	0.41099	0.00020088	488.7656004258787	32.392	0.68912	32.448	32.097	32.786	0.055309					56	24	3	0	0	0	0.064268	1	6194	6194		47.594	9.6204	1	894350			41924	620	24147	24148	51312	51312		73			0.028412299113597328
SARAIMAQL	9	Oxidation (M)	_SARAIM(Oxidation (M))AQL_		SARAIM(1)AQL		SARAIM(53)AQL	0	0	1		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7657775878906	2	488.765852	975.51715	0.3451	0.00016867	0.096332	4.7084E-05	0.44143	0.00021576	488.76571086956017	32.378	0.65535	32.433	32.136	32.791	0.054371					59	23	3	0	0	0	0.048637	2	6144	6144;6194		53.404	11.58	1	824940			41925	620	24147	24148	51313;51314	51313		73			0.028412299113597328
SARALPFG	8	Unmodified	_SARALPFG_					0	0	0		ENST00000413837.1_1_X:46506270-46506315:-|nuORF	ENST00000413837.1_1_X:46506270-46506315:-|nuORF	ENST00000413837.1_1_X:46506270-46506315:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.1863098144531	2	409.729595	817.444637	-0.36979	-0.00015152	0.31083	0.00012736	-0.058964	-2.4159E-05	409.72975199411945	14.317	0.28741	14.317	14.191	14.478	0					16	9	2	0	0	0	0.34319	1	702	702		5.7604	0	1	44473			41926	10296	24148	24149	51315	51315					0.02861263900092581
SARELVTLA	9	Unmodified	_SARELVTLA_					0	0	0			REV__ENSG00000103326|ENST00000219611|CAPN15	REV__ENSG00000103326|ENST00000219611|CAPN15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2793273925781	2	480.279649	958.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.808	1	82.881	82.381	83.381	0.073097								0	0	0	0.22065	1	21626	21626		15.847	0	1		+		41927	14365	24149	24150	51316	51316					0.063814564432505
SARHLATRR	9	Unmodified	_SARHLATRR_					0	0	0			REV__nc|ENSG00000165887|Q9GZV1-2|ANKRD2	REV__nc|ENSG00000165887|Q9GZV1-2|ANKRD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.3377685546875	2	534.312681	1066.61081	0.4891	0.00026133	2.0655	0.0011036	2.5546	0.001365	534.3138884207413	21.678	0.41808	21.678	21.401	21.819	0					21	14	2	0	0	0	0.26031	1	2846	2846		3.5965	0.31518	1	83819	+		41928	17272	24150	24151	51317	51317					0.08016710128640625
SARKEPAKA	9	Unmodified	_SARKEPAKA_					0	0	0			REV__nc|ENSG00000047849|P27816-5|MAP4	REV__nc|ENSG00000047849|P27816-5|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2773742675781	2	479.277441	956.540328	0.42622	0.00020428	-0.33949	-0.00016271	0.086726	4.1566E-05	479.2770710212292	77.219	2.5652	77.219	76.902	79.467	0					218	98	3	0	0	0	0.32371	1	19899	19899		5.2969	0	1	907390	+		41929	13546	24151	24152	51318	51318					0.06031992020314192
SARMQPRVWS	10	Unmodified	_SARMQPRVWS_					0	0	0			REV__ENST00000478796.5_1_1:45798697-45798943:-|nuORF	REV__ENST00000478796.5_1_1:45798697-45798943:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.8240966796875	2	609.314032	1216.61351	0.36415	0.00022188	-1.5477	-0.00094304	-1.1836	-0.00072116	609.3131303333412	76.583	0.48332	76.583	76.396	76.879	0					28	17	2	0	0	0	0.31926	1	19674	19674		5.7319	0.83484	1	246610	+		41930	21458	24152	24153	51319	51319					0.013867974713093645
SARPASTTS	9	Unmodified	_SARPASTTS_					0	0	0			REV__ENST00000571875.2_1_17:1958394-1960072:+|nuORF	REV__ENST00000571875.2_1_17:1958394-1960072:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.2532653808594	2	439.222331	876.430109	-0.0093336	-4.0995E-06	-0.78954	-0.00034679	-0.79888	-0.00035089	439.2216623794442	16.217	0.43544	16.155	16.006	16.442	-0.062534					23	14	3	0	0	0	0.25988	1	1341	1341		3.9444	0	1	30057	+		41931	22417	24153	24154	51320	51320					-0.013048530387209212
SARPASTTS	9	Unmodified	_SARPASTTS_					0	0	0			REV__ENST00000571875.2_1_17:1958394-1960072:+|nuORF	REV__ENST00000571875.2_1_17:1958394-1960072:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	439.222331	876.430109	-0.084534	-3.7129E-05	-0.54424	-0.00023904	-0.62878	-0.00027617	439.221927009343	16.126	0.34878	16.126	15.947	16.295	0	0.0049453	-2.9924E-05	NaN	3.9444	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31937	+		41932	22417	24153	24154							-0.013048530387209212
SARPASTTS	9	Unmodified	_SARPASTTS_					0	0	0			REV__ENST00000571875.2_1_17:1958394-1960072:+|nuORF	REV__ENST00000571875.2_1_17:1958394-1960072:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	439.222331	876.430109	-0.13425	-5.8967E-05	-0.2604	-0.00011437	-0.39465	-0.00017334	439.2219781179447	16.196	0.3531	16.082	15.95	16.304	-0.11434	-0.039051	0.00021942	NaN	3.9444	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30565	+		41933	22417	24153	24154							-0.013048530387209212
SARRKRKKKHR	11	Unmodified	_SARRKRKKKHR_					0	0	0		ENST00000483365.1_1_X:70596867-70597689:+|nuORF;nc|ENSG00000147133|P21675-23|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-1|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675-25|TAF1	ENST00000483365.1_1_X:70596867-70597689:+|nuORF	ENST00000483365.1_1_X:70596867-70597689:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.2535400390625	3	484.314915	1449.92291	0.46938	0.00022733	0.47933	0.00023215	0.94871	0.00045948	484.31530637404904	44.861	0.43258	44.936	44.697	45.129	0.075047					19	15	2	0	0	0	0.33336	1	9928	9928		1.1098	0.78048	1	212510			41934	4748	24154	24155	51321	51321					0.21595038873238082
SASAARLAPL	10	Unmodified	_SASAARLAPL_					0	0	0		ENST00000269593.4_1_17:38599756-38599807:+|nuORF	ENST00000269593.4_1_17:38599756-38599807:+|nuORF	ENST00000269593.4_1_17:38599756-38599807:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.9747009277344	2	478.779816	955.545079	0.30969	0.00014828	0.10215	4.8907E-05	0.41184	0.00019718	478.7798315616769	38.025	0.68319	38.116	37.772	38.455	0.090881					55	24	3	0	0	0	0.27086	1	7872	7872		26.021	0.62139	1	687920			41935	9078	24155	24156	51322	51322					0.06552876163061683
SASAARLAPL	10	Unmodified	_SASAARLAPL_					0	0	0		ENST00000269593.4_1_17:38599756-38599807:+|nuORF	ENST00000269593.4_1_17:38599756-38599807:+|nuORF	ENST00000269593.4_1_17:38599756-38599807:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.9747619628906	2	478.779816	955.545079	0.21498	0.00010293	0.25045	0.00011991	0.46543	0.00022284	478.77987027197037	37.96	0.9413	38.057	37.654	38.596	0.097527					65	33	3	0	0	0	0.2005	1	7839	7839		43.982	15.487	1	788840			41936	9078	24155	24156	51323	51323					0.06552876163061683
SASHIRLIALL	11	Unmodified	_SASHIRLIALL_					0	0	0			REV__ENSG00000172457|ENST00000641668|OR9G4	REV__ENSG00000172457|ENST00000641668|OR9G4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.3599243164062	2	597.371872	1192.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.999	1	99.992	99.492	100.49	-0.006897								0	0	0	0.38114	1	26769	26769		1.3295	0	1		+		41937	17712	24156	24157	51324	51324					0.14053644593786885
SASKKTEI	8	Unmodified	_SASKKTEI_					0	0	0		ENSG00000156869|ENST00000646001|FRRS1;nc|ENSG00000156869|Q6ZNA5-2|FRRS1	ENSG00000156869|ENST00000646001|FRRS1	ENSG00000156869|ENST00000646001|FRRS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.5944519042969	2	432.245275	862.475997	-0.11563	-4.9981E-05	0.16695	7.2164E-05	0.051321	2.2183E-05	432.24524829979026	24.862	0.41854	24.862	24.673	25.091	0					21	14	2	0	0	0	0.34167	1	3846	3846		11.64	11.64	1	86227			41938	5261	24157	24158	51325	51325					0.03925792143513718
SASLETKK	8	Unmodified	_SASLETKK_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5945739746094	2	432.245275	862.475997	-0.40504	-0.00017507	0.43888	0.00018971	0.033848	1.4631E-05	432.2453946119547	24.945	0.47308	24.914	24.681	25.154	-0.031408					25	15	2	0	0	0	0.3408	1	3941	3941		14.838	0	1	89115			41939	1866	24158	24159	51326	51326					0.039257921435250864
SASLETKK	8	Unmodified	_SASLETKK_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	432.245275	862.475997	-0.15093	-6.5238E-05	0.27503	0.00011888	0.1241	5.3643E-05	432.2454150919808	24.923	0.50217	24.867	24.6	25.102	-0.055931	-0.01388	-3.4422E-05	NaN	14.838	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111150			41940	1866	24158	24159							0.039257921435250864
SASLIWPY	8	Unmodified	_SASLIWPY_					0	0	0			REV__COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	REV__COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.7427673339844	2	468.744911	935.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.687	1	18.687	18.187	19.187	0								0	0	0	0.36961	1	2007	2007		5.7604	0	1		+		41941	13282	24159	24160	51327	51327					0.004949974944679525
SASLLELNCF	10	Unmodified	_SASLLELNCF_					0	0	0		ENST00000532072.1_1_1:44441705-44442052:+|nuORF	ENST00000532072.1_1_1:44441705-44442052:+|nuORF	ENST00000532072.1_1_1:44441705-44442052:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7892456054688	2	548.7708	1095.52705	1.0166	0.0005579	0.93951	0.00051558	1.9561	0.0010735	548.7710559092728	77.988	0.6655	77.957	77.705	78.37	-0.030434					48	24	3	0	0	0	0.30958	1	20096	20096		19.257	2.3147	1	392940			41942	11633	24160	24161	51328	51328					-0.01689626873940142
SASLLNGSMLQ	11	Unmodified	_SASLLNGSMLQ_					0	0	0		nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;ENST00000467178.5_1_9:130943037-130953136:-|nuORF	nc|ENSG00000148337|Q9ULV3-3|CIZ1	nc|ENSG00000148337|Q9ULV3-3|CIZ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7531127929688	2	560.786981	1119.55941	0.38716	0.00021711	-0.54191	-0.0003039	-0.15476	-8.6786E-05	560.7865850630157	19.837	0.30657	19.781	19.624	19.93	-0.055693					15	10	2	0	0	0	0.33236	1	2357	2357		3.8763	2.0321	1	39755			41943	4804	24161	24162	51329	51329					0.004411605290897569
SASLMVDR	8	Unmodified	_SASLMVDR_					0	0	0		ENSG00000166278|ENST00000299367|C2;nc|ENSG00000166278|P06681-3|C2	ENSG00000166278|ENST00000299367|C2	ENSG00000166278|ENST00000299367|C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.7342224121094	2	439.723652	877.432752	0.2982	0.00013113	0.9073	0.00039896	1.2055	0.00053009	439.7239029990521	63.94	0.67719	63.94	63.665	64.342	0					52	24	3	0	0	0	0.41097	1	15967	15967		18.135	3.5533	1	650230			41944	6056	24162	24163	51330	51330					-0.010867209054140403
SASLMVDR	8	Unmodified	_SASLMVDR_					0	0	0		ENSG00000166278|ENST00000299367|C2;nc|ENSG00000166278|P06681-3|C2	ENSG00000166278|ENST00000299367|C2	ENSG00000166278|ENST00000299367|C2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	439.723652	877.432752	0.2982	0.00013113	0.9073	0.00039896	1.2055	0.00053009	439.7239029990521	63.94	0.67719	63.94	63.665	64.342	0	-0.015241	6.9005E-05	NaN	18.135	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	650230			41945	6056	24162	24163							-0.010867209054140403
SASLMVDR	8	Unmodified	_SASLMVDR_					0	0	0		ENSG00000166278|ENST00000299367|C2;nc|ENSG00000166278|P06681-3|C2	ENSG00000166278|ENST00000299367|C2	ENSG00000166278|ENST00000299367|C2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	439.723652	877.432752	0.22448	9.8708E-05	0.90889	0.00039966	1.1334	0.00049837	439.7239001084693	63.848	0.85278	63.941	63.618	64.471	0.09288	-0.014386	7.0401E-05	NaN	18.135	63	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	503290			41946	6056	24162	24163							-0.010867209054140403
SASLMVDR	8	Unmodified	_SASLMVDR_					0	0	0		ENSG00000166278|ENST00000299367|C2;nc|ENSG00000166278|P06681-3|C2	ENSG00000166278|ENST00000299367|C2	ENSG00000166278|ENST00000299367|C2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	439.723652	877.432752	0.33057	0.00014536	0.6713	0.00029519	1.0019	0.00044055	439.7238032511206	63.994	0.7933	63.985	63.622	64.415	-0.0095291	0.029627	-0.00013854	NaN	18.135	52	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	588170			41947	6056	24162	24163							-0.010867209054140403
SASLPWALLGP	11	Unmodified	_SASLPWALLGP_					0	0	0		ENST00000461141.5_1_3:183952309-183959823:+|nuORF;ENSG00000145198|ENST00000691901|VWA5B2	ENST00000461141.5_1_3:183952309-183959823:+|nuORF	ENST00000461141.5_1_3:183952309-183959823:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7684326171875	2	556.310949	1110.60735	0.52778	0.00029361	-0.72209	-0.00040171	-0.19431	-0.0001081	556.3106642828768	48.263	0.39783	48.263	48.106	48.504	0					17	13	2	0	0	0	0.32293	1	10983	10983		18.146	1.0335	1	357220			41948	4636	24163	24164	51331	51331					0.0564660251143323
SASQRFYRV	9	Unmodified	_SASQRFYRV_					0	0	0		nc|ENSG00000127586|Q8WVB6-2|CHTF18;ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-3|CHTF18	nc|ENSG00000127586|Q8WVB6-2|CHTF18	nc|ENSG00000127586|Q8WVB6-2|CHTF18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2937622070312	2	557.293622	1112.57269	-0.0098253	-5.4756E-06	-0.57434	-0.00032008	-0.58417	-0.00032555	557.2933534737583	25.762	0.59319	25.74	25.274	25.867	-0.022238					34	20	2	0	0	0	0.34681	1	4179	4179		1.8442	0	1	132340			41949	3331	24164	24165	51332	51332					0.020907794233153254
SASSATQVHK	10	Unmodified	_SASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2622375488281	2	508.261988	1014.50942	-0.037056	-1.8834E-05	0.78338	0.00039816	0.74633	0.00037933	508.2621493209833	12.233	0.33223	12.233	12.135	12.468	0					31	11	3	0	0	0	0.049822	1	66	66		59.052	25.608	1	268750			41950	9689	24165	24166	51333	51333					0.002747939154346568
SASSATQVHK	10	Unmodified	_SASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2624206542969	2	508.261988	1014.50942	0.013408	6.815E-06	0.52176	0.00026519	0.53516	0.000272	508.2621841645742	12.234	0.39115	12.137	12.018	12.409	-0.096607					27	14	3	0	0	0	0.0046086	1	69	69		93.938	46.344	1	271170			41951	9689	24165	24166	51334	51334					0.002747939154346568
SASSATQVHK	10	Unmodified	_SASSATQVHK_					0	0	0		ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENST00000361272.8_2_8:17102747-17104366:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2622985839844	2	508.261988	1014.50942	-0.16104	-8.1852E-05	0.67897	0.00034509	0.51792	0.00026324	508.26222182242026	12.22	0.39442	12.152	12.068	12.462	-0.06806					28	14	3	0	0	0	0.084702	1	71	71		51.415	16.483	1	251950			41952	9689	24165	24166	51335	51335					0.002747939154346568
SASTSSQRFEE	11	Unmodified	_SASTSSQRFEE_					0	0	0		ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.18646240234375	3	410.186196	1227.53676	-0.22906	-9.3956E-05	0.34648	0.00014212	0.11743	4.8167E-05	410.1863311011323	14.496	0.52727	14.43	14.231	14.758	-0.066067					41	18	3	0	0	0	0.45202	1	761	761		4.4062	0	1	134020			41953	11253	24166	24167	51336	51336					-0.06790767334814518
SATAATLYR	9	Unmodified	_SATAATLYR_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.25604248046875	2	477.256174	952.497795	0.022782	1.0873E-05	0.16303	7.7808E-05	0.18581	8.8681E-05	477.25612244455414	22.263	0.65316	22.263	21.996	22.649	0					40	22	2	0	0	0	0.29176	1	3158	3158		10.074	0	1	114250	+		41954	18103	24167	24168	51337	51337					0.019645968920940504
SATAATLYR	9	Unmodified	_SATAATLYR_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	477.256174	952.497795	0.022782	1.0873E-05	0.16303	7.7808E-05	0.18581	8.8681E-05	477.25612244455414	22.263	0.65316	22.263	21.996	22.649	0	-0.081713	-5.8397E-05	NaN	10.074	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114250	+		41955	18103	24167	24168							0.019645968920940504
SATAATLYR	9	Unmodified	_SATAATLYR_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	477.256174	952.497795	0.13484	6.4355E-05	0.31389	0.00014981	0.44873	0.00021416	477.256197645132	22.381	0.80589	22.281	21.943	22.749	-0.10034	-0.064318	8.5597E-05	NaN	10.074	49	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76831	+		41956	18103	24167	24168							0.019645968920940504
SATAATLYR	9	Unmodified	_SATAATLYR_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	477.256174	952.497795	0.056448	2.694E-05	0.21304	0.00010168	0.26949	0.00012862	477.25609380862437	22.536	0.84972	22.491	21.885	22.735	-0.044867	0.14603	-1.0663E-05	NaN	10.074	49	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72035	+		41957	18103	24167	24168							0.019645968920940504
SATFPLSVQK	10	Unmodified	_SATFPLSVQK_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8291625976562	2	539.300581	1076.58661	0.68078	0.00036715	1.023	0.00055169	1.7038	0.00091884	539.3006556621177	44.726	0.92596	44.726	44.115	45.041	0					76	33	3	0	0	0	0.23628	1	9961	9961		35.612	12.954	1	1094400			41958	2308	24168	24169	51338	51338					0.05138012131783398
SATFPLSVQK	10	Unmodified	_SATFPLSVQK_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.30078125	2	539.300581	1076.58661	0.62423	0.00033665	0.35393	0.00019088	0.97816	0.00052752	539.3004860728897	44.599	0.54392	44.667	44.408	44.952	0.068569					46	19	3	0	0	0	0.093324	1	9908	9908		49.527	14.595	1	1153700			41959	2308	24168	24169	51339	51339					0.05138012131783398
SATFPLSVQK	10	Unmodified	_SATFPLSVQK_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.3006591796875	2	539.300581	1076.58661	0.65677	0.0003542	0.21257	0.00011464	0.86934	0.00046883	539.3004119850643	44.583	0.52071	44.658	44.362	44.883	0.075047					53	18	4	0	0	0	0.040516	1	9882	9882		61.09	32.595	1	1012600			41960	2308	24168	24169	51340	51340					0.05138012131783398
SATIVVVVVTG	11	Unmodified	_SATIVVVVVTG_					0	0	0			REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2	REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8187866210938	2	522.818607	1043.62266	0.20188	0.00010555	0.0056837	2.9715E-06	0.20756	0.00010852	522.8186152958366	39.745	0.79667	39.745	39.43	40.226	0					64	28	3	0	0	0	0.26921	1	8476	8476		24.991	0	1	655110	+		41961	17132	24169	24170	51341	51341					0.10259469308630287
SATIVVVVVTG	11	Unmodified	_SATIVVVVVTG_					0	0	0			REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2	REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8187866210938	2	522.818607	1043.62266	0.43321	0.00022649	-0.15307	-8.0027E-05	0.28015	0.00014647	522.8184854151737	39.625	0.80622	39.724	39.424	40.23	0.099407					66	28	3	0	0	0	0.25499	1	8415	8415		26.268	1.2772	1	781680	+		41962	17132	24169	24170	51342	51342					0.10259469308630287
SATIVVVVVTG	11	Unmodified	_SATIVVVVVTG_					0	0	0			REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2	REV__nc|ENSG00000164175|Q9UMX9-3|SLC45A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8187866210938	2	522.818607	1043.62266	0.43321	0.00022649	-0.15307	-8.0027E-05	0.28015	0.00014647	522.8184854151737	39.625	0.80622	39.724	39.424	40.23	0.099407					66	28	3	0	0	0	0.24515	1	8366	8366		39.95	18.413	1	781680	+		41963	17132	24169	24170	51343	51343					0.10259469308630287
SATLLKTLV	9	Unmodified	_SATLLKTLV_					0	0	0			REV__ENSG00000204740|ENST00000454679|MALRD1	REV__ENSG00000204740|ENST00000454679|MALRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.78948974609375	2	473.302593	944.590633	0.18021	8.5295E-05	0.1127	5.3343E-05	0.29292	0.00013864	473.30258172679237	49.623	1.0563	49.623	49.351	50.407	0					88	38	3	0	0	0	0.30064	1	11564	11564		8.7454	0.58988	1	3949000	+		41964	18962	24170	24171	51344	51344					0.11612101625485138
SATLLKTLV	9	Unmodified	_SATLLKTLV_					0	0	0			REV__ENSG00000204740|ENST00000454679|MALRD1	REV__ENSG00000204740|ENST00000454679|MALRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7896423339844	2	473.302593	944.590633	0.19934	9.4349E-05	0.14416	6.8233E-05	0.34351	0.00016258	473.30255247112103	49.642	1.0019	49.687	49.266	50.268	0.044891					101	37	4	0	0	0	0.30064	1	11561	11561		8.7454	0.58988	1	4368400	+		41965	18962	24170	24171	51345	51345					0.11612101625485138
SATLLKTLV	9	Unmodified	_SATLLKTLV_					0	0	0			REV__ENSG00000204740|ENST00000454679|MALRD1	REV__ENSG00000204740|ENST00000454679|MALRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7894592285156	2	473.302593	944.590633	0.18117	8.5747E-05	0.077589	3.6723E-05	0.25876	0.00012247	473.3025360682034	49.63	0.93739	49.651	49.314	50.252	0.020691					96	34	4	0	0	0	0.2719	1	11553	11553		13.042	1.5478	1	4153800	+		41966	18962	24170	24171	51346	51346					0.11612101625485138
SATLTHDAPA	10	Unmodified	_SATLTHDAPA_					0	0	0		ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-5|MLXIP	ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-5|MLXIP	ENSG00000175727|ENST00000319080|MLXIP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.23046875	2	492.243264	982.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.42	1	22.376	21.876	22.876	-0.044867								0	0	0	0.35216	1	3137	3137		13.906	0.39817	1				41967	6879;12851	24171	24172	51347	51347					-0.01996297350194709
SATQAVFQK	9	Unmodified	_SATQAVFQK_					0	0	0		ENSG00000100949|ENST00000216840|RABGGTA;ENST00000558534.5_1_14:24738716-24740321:-|nuORF;ENST00000560998.5_1_14:24737570-24740321:-|nuORF	ENSG00000100949|ENST00000216840|RABGGTA	ENSG00000100949|ENST00000216840|RABGGTA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2640686035156	2	490.263999	978.513445	0.083974	4.1169E-05	0.0012193	5.9777E-07	0.085193	4.1767E-05	490.26401672232856	25.374	0.51809	25.318	25.102	25.62	-0.055931					30	17	3	0	0	0	0.23749	1	4053	4053		20.415	11.669	1	97526			41968	1649	24172	24173	51348	51348					0.02332883409144415
SATQAVFQK	9	Unmodified	_SATQAVFQK_					0	0	0		ENSG00000100949|ENST00000216840|RABGGTA;ENST00000558534.5_1_14:24738716-24740321:-|nuORF;ENST00000560998.5_1_14:24737570-24740321:-|nuORF	ENSG00000100949|ENST00000216840|RABGGTA	ENSG00000100949|ENST00000216840|RABGGTA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	490.263999	978.513445	0.22797	0.00011177	-0.30236	-0.00014824	-0.074385	-3.6468E-05	490.2637410688133	25.308	0.41374	25.308	25.12	25.533	0	-0.011735	-0.00034178	NaN	20.415	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91735			41969	1649	24172	24173							0.02332883409144415
SATQAVFQK	9	Unmodified	_SATQAVFQK_					0	0	0		ENSG00000100949|ENST00000216840|RABGGTA;ENST00000558534.5_1_14:24738716-24740321:-|nuORF;ENST00000560998.5_1_14:24737570-24740321:-|nuORF	ENSG00000100949|ENST00000216840|RABGGTA	ENSG00000100949|ENST00000216840|RABGGTA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	490.263999	978.513445	-0.067596	-3.314E-05	0.27343	0.00013405	0.20583	0.00010091	490.264047858593	25.365	0.38895	25.334	25.154	25.543	-0.031408	0.013806	0.0002228	NaN	20.415	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107270			41970	1649	24172	24173							0.02332883409144415
SATTSPFFK	9	Unmodified	_SATTSPFFK_					0	0	0		nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB	nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-6|NUMB	nc|ENSG00000133961|P49757-4|NUMB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2536315917969	2	493.2531	984.491647	0.013579	6.698E-06	0.57153	0.00028191	0.58511	0.00028861	493.2531062788562	39.213	0.6385	39.213	38.931	39.569	0					39	22	3	0	0	0	0.15763	1	8246	8246		29.841	9.387	1	340530			41971	3741;12704	24173	24174	51349	51349					-0.0012192133942789951
SATTSPFFK	9	Unmodified	_SATTSPFFK_					0	0	0		nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB	nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-6|NUMB	nc|ENSG00000133961|P49757-4|NUMB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.25299072265625	2	493.2531	984.491647	0.23027	0.00011358	0.048222	2.3786E-05	0.27849	0.00013736	493.2531934697814	39.069	0.63333	39.162	38.888	39.522	0.09267					33	22	2	0	0	0	0.22935	1	8211	8211		19.362	5.4559	1	456380			41972	3741;12704	24173	24174	51350	51350					-0.0012192133942789951
SATVINTK	8	Unmodified	_SATVINTK_					0	0	0			REV__nc|ENSG00000097021|O00154-2|ACOT7	REV__nc|ENSG00000097021|O00154-2|ACOT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.55810546875	2	417.239993	832.465432	-0.32537	-0.00013576	0.055972	2.3354E-05	-0.2694	-0.0001124	417.2399048895255	15.105	0.39911	15.105	14.949	15.348	0					22	13	2	0	0	0	0.34092	1	958	958		8.5933	0	1	81595	+		41973	14119	24174	24175	51351	51351					0.04249809489112977
SATVVEVL	8	Unmodified	_SATVVEVL_					0	0	0			REV__ACAN|p.P1841Lfs*10|1|0.28|ENSG00000157766|chr15:88858104-88858104|C/-|frameshift_variant	REV__ACAN|p.P1841Lfs*10|1|0.28|ENSG00000157766|chr15:88858104-88858104|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.9010925292969	2	409.236919	816.459284	-0.076944	-3.1488E-05	3.8666	0.0015823	3.7896	0.0015508	409.2382629371834	43.122	0.62703	43.122	42.706	43.333	0					24	22	2	0	0	0	0.34046	1	9400	9400		14.582	0	1	95839	+		41974	13069	24175	24176	51352	51352					0.04371291257575649
SAVAKKKDK	9	Unmodified	_SAVAKKKDK_					0	0	0		ENSG00000110492|ENST00000395566|MDK	ENSG00000110492|ENST00000395566|MDK	ENSG00000110492|ENST00000395566|MDK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.259033203125	2	487.803291	973.59203	0.08374	4.0848E-05	-0.98536	-0.00048066	-0.90162	-0.00043981	487.80260888891377	16.834	0.4098	16.719	16.586	16.996	-0.11434					20	14	2	0	0	0	0.25526	1	1448	1448		7.9102	0	1	35867			41975	2314	24176	24177	51353	51353					0.10417735714224818
SAVAKKKDK	9	Unmodified	_SAVAKKKDK_					0	0	0		ENSG00000110492|ENST00000395566|MDK	ENSG00000110492|ENST00000395566|MDK	ENSG00000110492|ENST00000395566|MDK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.25897216796875	2	487.803291	973.59203	0.34464	0.00016812	-0.37553	-0.00018318	-0.030889	-1.5068E-05	487.80281797744385	16.836	0.51537	16.774	16.586	17.101	-0.062532					23	18	2	0	0	0	0.25526	1	1405	1405		7.9102	0	1	41586			41976	2314	24176	24177	51354	51354					0.10417735714224818
SAVAPRANSIA	11	Unmodified	_SAVAPRANSIA_					0	0	0			REV__ENST00000471962.1_1_20:60773737-60775066:+|nuORF	REV__ENST00000471962.1_1_20:60773737-60775066:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2471923828125	2	528.793455	1055.57236	0.67551	0.00035721	-0.36715	-0.00019415	0.30836	0.00016306	528.793044259935	29.603	0.41908	29.603	29.441	29.86	0					34	14	3	0	0	0	0.28192	1	5317	5317		32.037	8.8891	1	301390	+		41977	14250	24177	24178	51355	51355					0.046793597034593404
SAVDLIYAR	9	Unmodified	_SAVDLIYAR_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2630920410156	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.326	1	29.34	28.84	29.84	0.013474								0	0	0	0.18374	1	5228	5228		26.884	7.6267	1		+		41978	14066	24178	24179	51356	51356					0.041734564432204024
SAVELPKI	8	Unmodified	_SAVELPKI_					0	0	0		ENST00000508559.1_1_5:175735354-175735840:+|nuORF;nc|ENSG00000185515|P46736-4|BRCC3;ENST00000453705.1_3_X:154299864-154348422:+|nuORF;ENSG00000185515|ENST00000330045|BRCC3;nc|ENSG00000185515|P46736-3|BRCC3;nc|ENSG00000185515|P46736|BRCC3	ENST00000508559.1_1_5:175735354-175735840:+|nuORF	ENST00000508559.1_1_5:175735354-175735840:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.2506103515625	2	428.760561	855.506569	0.34706	0.0001488	-0.55048	-0.00023603	-0.20343	-8.7221E-05	428.76026388797624	50.706	0.69053	50.75	50.372	51.063	0.044891					31	24	2	0	0	0	0.31302	1	11723	11723		29.082	8.628	1	134980			41979	7539	24179	24180	51357	51357					0.07303570528563341
SAVELPKI	8	Unmodified	_SAVELPKI_					0	0	0		ENST00000508559.1_1_5:175735354-175735840:+|nuORF;nc|ENSG00000185515|P46736-4|BRCC3;ENST00000453705.1_3_X:154299864-154348422:+|nuORF;ENSG00000185515|ENST00000330045|BRCC3;nc|ENSG00000185515|P46736-3|BRCC3;nc|ENSG00000185515|P46736|BRCC3	ENST00000508559.1_1_5:175735354-175735840:+|nuORF	ENST00000508559.1_1_5:175735354-175735840:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.2508544921875	2	428.760561	855.506569	0.39762	0.00017049	-0.53471	-0.00022926	-0.13708	-5.8776E-05	428.76025474736633	50.725	0.55691	50.734	50.511	51.068	0.0095673					28	20	2	0	0	0	0.20663	1	11786	11786		41.84	11.203	1	118700			41980	7539	24179	24180	51358	51358					0.07303570528563341
SAVGTIVKK	9	Unmodified	_SAVGTIVKK_					0	0	0		ENST00000583329.5_1_17:73699767-73702598:+|nuORF;ENST00000578756.5_1_17:73699860-73702598:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP;ENST00000579005.1_1_17:73702284-73702598:+|nuORF;ENST00000584557.1_1_17:73702349-73702598:+|nuORF;ENST00000580322.5_1_17:73702024-73702598:+|nuORF;ENST00000293208.13_1_17:73701692-73702598:+|nuORF	ENST00000583329.5_1_17:73699767-73702598:+|nuORF	ENST00000583329.5_1_17:73699767-73702598:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7869567871094	2	451.78711	901.559667	0.052928	2.3912E-05	-0.19592	-8.8516E-05	-0.143	-6.4604E-05	451.7869025704608	18.221	0.68591	18.221	17.991	18.677	0					58	23	3	0	0	0	0.0037449	1	1873	1873		96.367	33.794	1	358900			41981	5515	24180	24181	51359	51359					0.10494948311236385
SAVGTIVKK	9	Unmodified	_SAVGTIVKK_					0	0	0		ENST00000583329.5_1_17:73699767-73702598:+|nuORF;ENST00000578756.5_1_17:73699860-73702598:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP;ENST00000579005.1_1_17:73702284-73702598:+|nuORF;ENST00000584557.1_1_17:73702349-73702598:+|nuORF;ENST00000580322.5_1_17:73702024-73702598:+|nuORF;ENST00000293208.13_1_17:73701692-73702598:+|nuORF	ENST00000583329.5_1_17:73699767-73702598:+|nuORF	ENST00000583329.5_1_17:73699767-73702598:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7870178222656	2	451.78711	901.559667	-0.013602	-6.1452E-06	-0.10947	-4.9457E-05	-0.12307	-5.5602E-05	451.7869416958923	18.375	0.85627	18.258	17.928	18.784	-0.11739					63	29	3	0	0	0	0.0028542	1	1902	1902		103.42	40.847	1	322700			41982	5515	24180	24181	51360	51360					0.10494948311236385
SAVGTIVKK	9	Unmodified	_SAVGTIVKK_					0	0	0		ENST00000583329.5_1_17:73699767-73702598:+|nuORF;ENST00000578756.5_1_17:73699860-73702598:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP;ENST00000579005.1_1_17:73702284-73702598:+|nuORF;ENST00000584557.1_1_17:73702349-73702598:+|nuORF;ENST00000580322.5_1_17:73702024-73702598:+|nuORF;ENST00000293208.13_1_17:73701692-73702598:+|nuORF	ENST00000583329.5_1_17:73699767-73702598:+|nuORF	ENST00000583329.5_1_17:73699767-73702598:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7869567871094	2	451.78711	901.559667	-0.11355	-5.13E-05	-0.070475	-3.184E-05	-0.18402	-8.314E-05	451.78698055828477	18.328	0.89968	18.27	18.059	18.958	-0.058174					67	31	4	0	0	0	0.0028542	2	1899	1899;1947		103.42	40.847	1	405150			41983	5515	24180	24181	51361;51362	51361					0.10494948311236385
SAVGTPLNAL	10	Unmodified	_SAVGTPLNAL_					0	0	0		ENSG00000143171|ENST00000359842|RXRG	ENSG00000143171|ENST00000359842|RXRG	ENSG00000143171|ENST00000359842|RXRG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7664794921875	2	471.766374	941.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.418	1	67.496	66.996	67.996	0.078041								0	0	0	0.054918	1	16920	16920		62.573	6.3957	1				41984	4485	24181	24182	51363	51363					0.04509767551905952
SAVIFANNK	9	Unmodified	_SAVIFANNK_					0	0	0			REV__BTG3|p.H186Qfs*36|1|0.24|ENSG00000154640|chr21:17594273-17594294|TGGCTTTTTTCTGGGCAAAGGG/-|frameshift_variant	REV__BTG3|p.H186Qfs*36|1|0.24|ENSG00000154640|chr21:17594273-17594294|TGGCTTTTTTCTGGGCAAAGGG/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.2667236328125	2	482.266542	962.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.462	1	18.462	17.962	18.962	0								0	0	0	0.25858	1	1939	1939		3.5965	0	1		+		41985	13131	24182	24183	51364	51364					0.03577187271741877
SAVLFTITK	9	Unmodified	_SAVLFTITK_					0	0	0		ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.294189453125	2	490.294768	978.574983	0.48981	0.00024015	-0.84726	-0.0004154	-0.35745	-0.00017525	490.29418315625503	51.285	0.58856	51.285	51.03	51.619	0					47	21	3	0	0	0	0.0008224	1	11954	11954		125.04	67.316	1	935220			41986	6969	24183	24184	51365	51365					0.08483815108422732
SAVLFTITK	9	Unmodified	_SAVLFTITK_					0	0	0		ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2942199707031	2	490.294768	978.574983	0.43188	0.00021175	-0.97633	-0.00047869	-0.54445	-0.00026694	490.294250883092	51.274	0.72555	51.284	50.887	51.612	0.0095673					66	27	4	0	0	0	0.00047355	1	11963	11963		103.82	56.229	1	1159900			41987	6969	24183	24184	51366	51366					0.08483815108422732
SAVLFTITK	9	Unmodified	_SAVLFTITK_					0	0	0		ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	ENSG00000177189|ENST00000379565|RPS6KA3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	490.294768	978.574983	0.37131	0.00018205	-1.0237	-0.00050189	-0.65235	-0.00031984	490.2942428314522	51.289	0.5582	51.336	51.037	51.595	0.046574	0.034184	-7.0025E-05	NaN	103.82	54	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	992610			41988	6969	24183	24184							0.08483815108422732
SAVPRLMLT	9	Unmodified	_SAVPRLMLT_					0	0	0			REV__ENST00000574946.5_1_17:6024012-6024231:+|nuORF	REV__ENST00000574946.5_1_17:6024012-6024231:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.79510498046875	2	494.28642	986.558287	0.38846	0.00019201	-1.8054	-0.0008924	-1.417	-0.00070039	494.2857748687801	52.268	0.74182	52.268	51.914	52.656	0					52	26	3	0	0	0	0.23784	1	12177	12177		13.906	0	1	571910	+		41989	22436	24184	24185	51367	51367					0.0644699095081478
SAVRPVIEK	9	Unmodified	_SAVRPVIEK_					0	0	0		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8037414550781	2	499.803291	997.59203	0.40412	0.00020198	0.8196	0.00040964	1.2237	0.00061162	499.80342897457524	20.341	0.41495	20.341	20.207	20.622	0					31	14	3	0	0	0	0.14535	2	2509	2509;2560		31.636	6.6448	1	167500			41990	2749	24185	24186	51368;51369	51368					0.09313735714226823
SAVRPVIEK	9	Unmodified	_SAVRPVIEK_					0	0	0		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.8036193847656	2	499.803291	997.59203	0.60651	0.00030314	0.74021	0.00036996	1.3467	0.00067309	499.80352016378345	20.526	0.52047	20.416	20.259	20.779	-0.11003					30	18	2	0	0	0	0.14535	2	2609	2559;2609		31.636	6.6448	1	214810			41991	2749	24185	24186	51370;51371	51371					0.09313735714226823
SAVRPVIEK	9	Unmodified	_SAVRPVIEK_					0	0	0		nc|ENSG00000116750|Q9Y5K5-2|UCHL5;nc|ENSG00000116750|Q9Y5K5-4|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	nc|ENSG00000116750|Q9Y5K5-2|UCHL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.80303955078125	2	499.803291	997.59203	0.64177	0.00032076	0.60617	0.00030296	1.2479	0.00062372	499.8033551724339	20.489	0.68801	20.436	20.229	20.917	-0.05291					38	24	2	0	0	0	0.16863	2	2530	2530;2572		28.234	8.8717	1	205650			41992	2749	24185	24186	51372;51373	51372					0.09313735714226823
SAWLVAGK	8	Unmodified	_SAWLVAGK_					0	0	0		TBX10|p.L239Afs*2|1|0.05|ENSG00000167800|chr11:67632661-67632662|-/GC|frameshift_variant;ENSG00000167800|ENST00000335385|TBX10	TBX10|p.L239Afs*2|1|0.05|ENSG00000167800|chr11:67632661-67632662|-/GC|frameshift_variant	TBX10|p.L239Afs*2|1|0.05|ENSG00000167800|chr11:67632661-67632662|-/GC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.215576171875	2	416.239796	830.465038	-0.014612	-6.0819E-06	-2.1003	-0.00087421	-2.1149	-0.00088029	416.23926920719606	22.497	0.66499	22.452	22.182	22.847	-0.044867					30	22	2	0	0	0	0.32435	1	3153	3153		16.942	0	1	60268			41993	6214	24186	24187	51374	51374					0.043024345598951186
SAWQVNNIEGE	11	Unmodified	_SAWQVNNIEGE_					0	0	0			REV__nc|ENSG00000136485|P61962-2|DCAF7	REV__nc|ENSG00000136485|P61962-2|DCAF7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.8722839355469	3	416.194803	1245.56258	-0.7284	-0.00030316	0.54537	0.00022698	-0.18303	-7.6175E-05	416.1951413774356	35.245	0.63233	35.245	34.943	35.575	0					63	22	4	0	0	0	0.33236	1	6961	6961		4.4062	1.9714	1	408900	+		41994	15811	24187	24188	51375	51375					-0.05037873092555856
SAYDQKNIRR	10	Unmodified	_SAYDQKNIRR_					0	0	0		TFDP2|p.P356Lfs*4|1|0.28|ENSG00000114126|chr3:141953001-141953001|G/-|frameshift_variant;ENSG00000114126|ENST00000489671|TFDP2;ENST00000453595.1_1_X:36980271-36981156:-|nuORF;nc|ENSG00000114126|Q14188-7|TFDP2;nc|ENSG00000198176|Q14186-2|TFDP1;nc|ENSG00000114126|Q14188-6|TFDP2;nc|ENSG00000114126|Q14188-2|TFDP2;nc|ENSG00000114126|Q14188-4|TFDP2;ENST00000544902.5_1_13:114277566-114294579:+|nuORF;ENSG00000198176|ENST00000375370|TFDP1;nc|ENSG00000114126|Q14188-8|TFDP2	TFDP2|p.P356Lfs*4|1|0.28|ENSG00000114126|chr3:141953001-141953001|G/-|frameshift_variant	TFDP2|p.P356Lfs*4|1|0.28|ENSG00000114126|chr3:141953001-141953001|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.55810546875	3	417.558187	1249.65273	-0.32261	-0.00013471	-0.18807	-7.853E-05	-0.51068	-0.00021324	417.5580553178315	15.167	0.72946	15.167	14.925	15.654	0					58	24	4	0	0	0	0.31329	1	958	958		17.049	10.814	1	429030			41995	2547	24188	24189	51376	51376					0.03789221026499945
SAYDQKNIRR	10	Unmodified	_SAYDQKNIRR_					0	0	0		TFDP2|p.P356Lfs*4|1|0.28|ENSG00000114126|chr3:141953001-141953001|G/-|frameshift_variant;ENSG00000114126|ENST00000489671|TFDP2;ENST00000453595.1_1_X:36980271-36981156:-|nuORF;nc|ENSG00000114126|Q14188-7|TFDP2;nc|ENSG00000198176|Q14186-2|TFDP1;nc|ENSG00000114126|Q14188-6|TFDP2;nc|ENSG00000114126|Q14188-2|TFDP2;nc|ENSG00000114126|Q14188-4|TFDP2;ENST00000544902.5_1_13:114277566-114294579:+|nuORF;ENSG00000198176|ENST00000375370|TFDP1;nc|ENSG00000114126|Q14188-8|TFDP2	TFDP2|p.P356Lfs*4|1|0.28|ENSG00000114126|chr3:141953001-141953001|G/-|frameshift_variant	TFDP2|p.P356Lfs*4|1|0.28|ENSG00000114126|chr3:141953001-141953001|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.5580749511719	3	417.558187	1249.65273	-0.037348	-1.5595E-05	-0.10253	-4.2814E-05	-0.13988	-5.8409E-05	417.5580848932303	15.423	0.74168	15.313	14.955	15.696	-0.10981					67	25	4	0	0	0	0.32615	1	1031	1031		17.049	10.814	1	348600			41996	2547	24188	24189	51377	51377					0.03789221026499945
SAYDQKNIRR	10	Unmodified	_SAYDQKNIRR_					0	0	0		TFDP2|p.P356Lfs*4|1|0.28|ENSG00000114126|chr3:141953001-141953001|G/-|frameshift_variant;ENSG00000114126|ENST00000489671|TFDP2;ENST00000453595.1_1_X:36980271-36981156:-|nuORF;nc|ENSG00000114126|Q14188-7|TFDP2;nc|ENSG00000198176|Q14186-2|TFDP1;nc|ENSG00000114126|Q14188-6|TFDP2;nc|ENSG00000114126|Q14188-2|TFDP2;nc|ENSG00000114126|Q14188-4|TFDP2;ENST00000544902.5_1_13:114277566-114294579:+|nuORF;ENSG00000198176|ENST00000375370|TFDP1;nc|ENSG00000114126|Q14188-8|TFDP2	TFDP2|p.P356Lfs*4|1|0.28|ENSG00000114126|chr3:141953001-141953001|G/-|frameshift_variant	TFDP2|p.P356Lfs*4|1|0.28|ENSG00000114126|chr3:141953001-141953001|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.55804443359375	3	417.558187	1249.65273	-0.1227	-5.1234E-05	-0.22822	-9.5296E-05	-0.35092	-0.00014653	417.55808983092135	15.389	0.62697	15.324	15.041	15.668	-0.064413					57	20	4	0	0	0	0.31709	1	1019	1019		18.34	10.053	1	506950			41997	2547	24188	24189	51378	51378					0.03789221026499945
SAYFAEKLYK	10	Unmodified	_SAYFAEKLYK_					0	0	0		ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000471395.1_1_2:70045687-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.3217163085938	2	610.321514	1218.62847	0.092657	5.6551E-05	0.20183	0.00012318	0.29449	0.00017973	610.3215375330403	39.814	0.65299	39.814	39.54	40.193	0					59	23	3	0	0	0	0.0042139	2	8415	8415;8467		118.21	88.369	1	646390			41998	7921	24189	24190	51379;51380	51379					0.02790567820261458
SAYFAEKLYK	10	Unmodified	_SAYFAEKLYK_					0	0	0		ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000471395.1_1_2:70045687-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.2166442871094	3	407.216768	1218.62847	-0.30708	-0.00012505	0.10601	4.3168E-05	-0.20107	-8.1878E-05	407.21674518597735	39.802	1.0958	39.802	39.48	40.576	0					111	39	4	0	0	0	0.30504	1	8480	8480		14.838	7.229	1	1703800			41999	7921	24189	24190	51381	51381					0.02790567820261458
SAYFAEKLYK	10	Unmodified	_SAYFAEKLYK_					0	0	0		ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000471395.1_1_2:70045687-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.3217163085938	2	610.321514	1218.62847	0.33955	0.00020723	0.00076738	4.6835E-07	0.34031	0.0002077	610.3214354708304	39.545	0.60897	39.638	39.442	40.051	0.09267					51	21	3	0	0	0	0.0042139	2	8353	8353;8406		118.21	89.005	1	753700			42000	7921	24189	24190	51382;51383	51382					0.02790567820261458
SAYFAEKLYK	10	Unmodified	_SAYFAEKLYK_					0	0	0		ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000471395.1_1_2:70045687-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.2166748046875	3	407.216768	1218.62847	-0.024299	-9.895E-06	-0.22862	-9.3099E-05	-0.25292	-0.00010299	407.2166429282104	39.543	0.92194	39.636	39.332	40.254	0.09267					96	32	4	0	0	0	0.27105	1	8396	8396		23.964	11.737	1	2050800			42001	7921	24189	24190	51384	51384					0.02790567820261458
SAYFAEKLYK	10	Unmodified	_SAYFAEKLYK_					0	0	0		ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000471395.1_1_2:70045687-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	ENST00000477632.5_1_2:70037634-70052644:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.3214721679688	2	610.321514	1218.62847	0.26067	0.00015909	0.0091742	5.5992E-06	0.26985	0.00016469	610.3214383244664	39.585	0.58581	39.684	39.452	40.038	0.099407					51	20	3	0	0	0	0.0042139	2	8339	8339;8391		118.21	81.703	1	913790			42002	7921	24189	24190	51385;51386	51385					0.02790567820261458
SAYKKSAI	8	Unmodified	_SAYKKSAI_					0	0	0		ENSG00000138075|ENST00000405322|ABCG5	ENSG00000138075|ENST00000405322|ABCG5	ENSG00000138075|ENST00000405322|ABCG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.23779296875	2	434.25036	866.486168	-0.17408	-7.5594E-05	-0.74019	-0.00032143	-0.91427	-0.00039702	434.24987344178805	26.803	0.53171	26.803	26.614	27.146	0					33	18	3	0	0	0	0.43302	1	4466	4466		11.64	0.81637	1	121950			42003	4113	24190	24191	51387	51387					0.04758399868762808
SAYLGSEQYK	10	Unmodified	_SAYLGSEQYK_					0	0	0		nc|ENSG00000171202|Q9H061-2|TMEM126A;ENSG00000171202|ENST00000304511|TMEM126A	nc|ENSG00000171202|Q9H061-2|TMEM126A	nc|ENSG00000171202|Q9H061-2|TMEM126A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.8367919921875	2	573.277303	1144.54005	0.21555	0.00012357	-0.15224	-8.7275E-05	0.063312	3.6295E-05	573.2771153190224	30.714	0.61922	30.714	30.525	31.144	0					34	21	3	0	0	0	0.19779	1	5652	5652		53.317	23.88	1	192080			42004	6523	24191	24192	51388	51388					-0.026434724901946538
SAYLGSEQYK	10	Unmodified	_SAYLGSEQYK_					0	0	0		nc|ENSG00000171202|Q9H061-2|TMEM126A;ENSG00000171202|ENST00000304511|TMEM126A	nc|ENSG00000171202|Q9H061-2|TMEM126A	nc|ENSG00000171202|Q9H061-2|TMEM126A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8369750976562	2	573.277303	1144.54005	0.27866	0.00015975	-0.12686	-7.2727E-05	0.1518	8.7022E-05	573.2771574519954	30.779	0.56187	30.807	30.58	31.142	0.027948					39	19	3	0	0	0	0.2541	1	5666	5666		30.703	10.123	1	211090			42005	6523	24191	24192	51389	51389					-0.026434724901946538
SAYLGSEQYK	10	Unmodified	_SAYLGSEQYK_					0	0	0		nc|ENSG00000171202|Q9H061-2|TMEM126A;ENSG00000171202|ENST00000304511|TMEM126A	nc|ENSG00000171202|Q9H061-2|TMEM126A	nc|ENSG00000171202|Q9H061-2|TMEM126A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.8367919921875	2	573.277303	1144.54005	0.054392	3.1182E-05	0.40006	0.00022934	0.45445	0.00026053	573.2774086052785	30.689	0.41513	30.716	30.53	30.945	0.027157					31	14	3	0	0	0	0.22522	1	5654	5654		46.022	16.585	1	199780			42006	6523	24191	24192	51390	51390					-0.026434724901946538
SAYRQPVKK	9	Unmodified	_SAYRQPVKK_					0	0	0		nc|ENSG00000102710|Q8NEM7-2|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H;ENST00000473871.1_1_13:37583848-37586479:-|nuORF	nc|ENSG00000102710|Q8NEM7-2|SUPT20H	nc|ENSG00000102710|Q8NEM7-2|SUPT20H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8142700195312	2	538.81419	1075.61383	0.13265	7.1475E-05	0.033544	1.8074E-05	0.1662	8.9549E-05	538.8141109964683	12.736	0.23475	12.736	12.612	12.847	0					19	7	3	0	0	0	0.2869	1	214	214		10.8	2.644	1	311370			42007	12628	24192	24193	51391	51391					0.07904540462777732
SAYRQPVKK	9	Unmodified	_SAYRQPVKK_					0	0	0		nc|ENSG00000102710|Q8NEM7-2|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H;ENST00000473871.1_1_13:37583848-37586479:-|nuORF	nc|ENSG00000102710|Q8NEM7-2|SUPT20H	nc|ENSG00000102710|Q8NEM7-2|SUPT20H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8140258789062	2	538.81419	1075.61383	0.12018	6.4753E-05	0.063405	3.4164E-05	0.18358	9.8916E-05	538.8141676504644	12.771	0.29318	12.672	12.521	12.814	-0.09929					25	9	4	0	0	0	0.2869	1	222	222		10.8	2.644	1	279450			42008	12628	24192	24193	51392	51392					0.07904540462777732
SAYRQPVKK	9	Unmodified	_SAYRQPVKK_					0	0	0		nc|ENSG00000102710|Q8NEM7-2|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H;ENST00000473871.1_1_13:37583848-37586479:-|nuORF	nc|ENSG00000102710|Q8NEM7-2|SUPT20H	nc|ENSG00000102710|Q8NEM7-2|SUPT20H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.814208984375	2	538.81419	1075.61383	0.086936	4.6842E-05	0.016399	8.836E-06	0.10333	5.5678E-05	538.8141053179208	12.791	0.27105	12.724	12.58	12.851	-0.067495					24	8	4	0	0	0	0.26278	1	224	224		14.405	6.2499	1	309600			42009	12628	24192	24193	51393	51393					0.07904540462777732
SCCHCSLL	8	Unmodified	_SCCHCSLL_					0	0	0			REV__ENST00000216039.9_1_22:39083550-39083643:-|nuORF	REV__ENST00000216039.9_1_22:39083550-39083643:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.5944519042969	2	433.171884	864.329215	-0.21357	-9.2514E-05	-0.069394	-3.006E-05	-0.28297	-0.00012257	433.17180674722226	23.824	2.8845	23.824	22.649	25.533	0					158	99	2	0	0	0	0.34131	1	3846	3846		12.532	2.3482	1	102450	+		42010	19407	24193	24194	51394	51394					-0.10837667609075652
SCCRGDYLFY	10	Unmodified	_SCCRGDYLFY_					0	0	0		ENST00000361611.10_1_14:23495089-23495161:-|nuORF	ENST00000361611.10_1_14:23495089-23495161:-|nuORF	ENST00000361611.10_1_14:23495089-23495161:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.7508544921875	2	613.752084	1225.48961	0.21302	0.00013074	-1.9495	-0.0011965	-1.7365	-0.0010658	613.7505804713726	67.285	0.51201	67.285	67.135	67.647	0					48	17	4	0	0	0	0.39935	1	16941	16941		3.5965	0	1	350240			42011	9694	24194	24195	51395	51395					-0.1141104141120195
SCFDFIDMA	9	Unmodified	_SCFDFIDMA_					0	0	0			REV__nc|ENSG00000143199|Q96PN6-4|ADCY10	REV__nc|ENSG00000143199|Q96PN6-4|ADCY10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7113037109375	2	524.709353	1047.40415	0.54726	0.00028715	2.2185	0.0011641	2.7658	0.0014512	524.7110247781839	68.801	0.8109	68.873	68.59	69.401	0.071938					89	29	4	0	0	0	0.1669	1	17359	17359		28.487	0	1	1725700	+		42012	16157	24195	24196	51396	51396					-0.11765206596851385
SCFDFIDMA	9	Unmodified	_SCFDFIDMA_					0	0	0			REV__nc|ENSG00000143199|Q96PN6-4|ADCY10	REV__nc|ENSG00000143199|Q96PN6-4|ADCY10	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.709353	1047.40415	0.52258	0.0002742	2.5845	0.0013561	3.1071	0.0016303	524.7110398154865	68.858	0.85969	68.839	68.547	69.407	-0.019157	-0.010813	0.00011841	NaN	28.487	83	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1858300	+		42013	16157	24195	24196							-0.11765206596851385
SCHEMSTGD	9	Unmodified	_SCHEMSTGD_					0	0	0			REV__ENSG00000144596|ENST00000621039|GRIP2	REV__ENSG00000144596|ENST00000621039|GRIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.6688537597656	2	483.668217	965.321881	0.11991	5.7998E-05	-0.33345	-0.00016128	-0.21354	-0.00010328	483.6686785797871	27.117	1.165	27.117	26.789	27.954	0					107	40	4	0	0	0	0.34681	1	4504	4504		1.8442	0	1	920930	+		42014	16246	24196	24197	51397	51397					-0.1621672867580628
SCHSARPPRF	10	Unmodified	_SCHSARPPRF_					0	0	0			REV__ENST00000523468.5_1_6:157963626-158049550:+|nuORF	REV__ENST00000523468.5_1_6:157963626-158049550:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8064575195312	2	579.285274	1156.556	0.2582	0.00014957	1.1894	0.00068902	1.4476	0.00083859	579.2873876678256	37.876	0.91343	37.973	37.604	38.517	0.097527					53	32	3	0	0	0	0.21644	1	7770	7770		30.637	0	1	212670	+		42015	17869	24197	24198	51398	51398					-0.016020447342725674
SCILFMGP	8	Unmodified	_SCILFMGP_					0	0	0			REV__ENST00000465745.6_1_9:35093318-35093600:-|nuORF	REV__ENST00000465745.6_1_9:35093318-35093600:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7591552734375	2	434.208792	866.403032	0.35172	0.00015272	-0.62497	-0.00027137	-0.27324	-0.00011865	434.20872635289186	78.168	0.48051	78.168	77.878	78.358	0					24	17	2	0	0	0	0.34319	1	20124	20124		5.7604	0.52976	1	132420	+		42016	21277	24198	24199	51399	51399					-0.03551376175096266
SCLFWGCEFF	10	Unmodified	_SCLFWGCEFF_					0	0	0		ENST00000340855.10_2_X:148561276-148561471:-|nuORF	ENST00000340855.10_2_X:148561276-148561471:-|nuORF	ENST00000340855.10_2_X:148561276-148561471:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.7515258789062	2	619.754095	1237.49364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.603	1	80.576	80.076	81.076	-0.026825								0	0	0	0.35216	1	20939	20939		13.906	2.2658	1				42017	9518	24199	24200	51400	51400					-0.11560951917499551
SCLWWHPQL	9	Unmodified	_SCLWWHPQL_					0	0	0			REV__ENST00000592689.5_1_2:179400536-179404864:+|nuORF	REV__ENST00000592689.5_1_2:179400536-179404864:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.2833251953125	2	585.281669	1168.54878	0.024194	1.416E-05	1.6456	0.00096316	1.6698	0.00097732	585.2831242102781	14.624	0.52961	14.624	14.395	14.925	0					58	18	4	0	0	0	0.34681	1	755	755		1.8442	0.51471	1	333710	+		42018	22574	24200	24201	51401	51401					-0.028747773347049588
SCLYKHWFL	9	Unmodified	_SCLYKHWFL_					0	0	0			REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.7996215820312	2	598.799694	1195.58484	0.42439	0.00025412	-0.59042	-0.00035354	-0.16603	-9.9421E-05	598.7992747131559	30.834	0.58313	30.834	30.587	31.171	0					46	20	3	0	0	0	0.25989	1	5686	5686		14.838	14.838	1	273550	+		42019	19382	24201	24202	51402	51402					-0.005133201578473745
SCLYKHWFL	9	Unmodified	_SCLYKHWFL_					0	0	0			REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.7998046875	2	598.799694	1195.58484	0.37776	0.0002262	-0.61401	-0.00036767	-0.23625	-0.00014147	598.7995177027263	30.824	0.58806	30.852	30.665	31.253	0.027948					44	20	4	0	0	0	0.23007	1	5686	5686		19.257	19.257	1	285480	+		42020	19382	24201	24202	51403	51403					-0.005133201578473745
SCLYKHWFL	9	Unmodified	_SCLYKHWFL_					0	0	0			REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.7988891601562	2	598.799694	1195.58484	0.23383	0.00014002	-0.77294	-0.00046284	-0.53911	-0.00032282	598.7995170485232	30.824	0.5241	30.852	30.612	31.136	0.027159					42	18	4	0	0	0	0.25989	1	5681	5681		14.838	14.838	1	270790	+		42021	19382	24201	24202	51404	51404					-0.005133201578473745
SCLYKHWFL	9	Unmodified	_SCLYKHWFL_					0	0	0			REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	598.799694	1195.58484	0.42439	0.00025412	-0.59042	-0.00035354	-0.16603	-9.9421E-05	598.7992747131559	30.834	0.58313	30.834	30.587	31.171	0	-0.012034	5.8328E-05	NaN	19.257	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273550	+		42022	19382	24201	24202							-0.005133201578473745
SCLYKHWFL	9	Unmodified	_SCLYKHWFL_					0	0	0			REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	598.799694	1195.58484	0.37776	0.0002262	-0.61401	-0.00036767	-0.23625	-0.00014147	598.7995177027263	30.824	0.58806	30.852	30.665	31.253	0.027948	0.0063183	3.0075E-05	NaN	19.257	44	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285480	+		42023	19382	24201	24202							-0.005133201578473745
SCLYKHWFL	9	Unmodified	_SCLYKHWFL_					0	0	0			REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	598.799694	1195.58484	0.23383	0.00014002	-0.77294	-0.00046284	-0.53911	-0.00032282	598.7995170485232	30.824	0.5241	30.852	30.612	31.136	0.027159	0.0057153	-0.00016026	NaN	19.257	42	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270790	+		42024	19382	24201	24202							-0.005133201578473745
SCQLHRLDEF	10	Unmodified	_SCQLHRLDEF_					0	0	0			REV__ENSG00000214414|ENST00000398290|TRIM77	REV__ENSG00000214414|ENST00000398290|TRIM77	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.5325622558594	3	416.532762	1246.57646	0.24157	0.00010062	-0.45808	-0.00019081	-0.21651	-9.0184E-05	416.53222410991873	40.983	0.79135	41.074	40.691	41.482	0.090252					89	29	4	0	0	0	0.38952	1	8829	8829		5.4027	0	1	1709800	+		42025	19061	24202	24203	51405	51405					-0.036969188651255536
SCQYCSFVSAF	11	Unmodified	_SCQYCSFVSAF_					0	0	0		nc|ENSG00000148143|Q96JM2-3|ZNF462;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462	nc|ENSG00000148143|Q96JM2-3|ZNF462	nc|ENSG00000148143|Q96JM2-3|ZNF462	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.2518310546875	2	621.251917	1240.48928	0.30797	0.00019133	-0.53566	-0.00033278	-0.22769	-0.00014145	621.2517678821926	44.213	0.87016	44.213	43.932	44.802	0					89	31	4	0	0	0	0.39802	1	9852	9852		11.495	0.67078	1	2866200			42026	4792	24203	24204	51406	51406					-0.12134461131040553
SCRFLLSMEF	10	Unmodified	_SCRFLLSMEF_					0	0	0			REV__ENST00000565493.1_1_20:34637479-34637734:-|nuORF	REV__ENST00000565493.1_1_20:34637479-34637734:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.19720458984375	3	411.531593	1231.57295	0.23149	9.5265E-05	0.47229	0.00019436	0.70378	0.00028963	411.5317837586168	76.393	0.71446	76.362	76.137	76.852	-0.031487					47	26	2	0	0	0	0.31942	1	19669	19669		6.1918	6.1918	1	706680	+		42027	22356	24204	24205	51407	51407					-0.03357304963333263
SCSKTKVDLK	10	Unmodified	_SCSKTKVDLK_					0	0	0			REV__ENST00000472137.5_1_10:76970916-76977714:+|nuORF	REV__ENST00000472137.5_1_10:76970916-76977714:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.805908203125	2	554.805174	1107.59579	0.32168	0.00017847	2.3507	0.0013042	2.6724	0.0014827	554.8063861944785	37.35	0.35151	37.443	37.248	37.599	0.093018					31	12	4	0	0	0	0.26265	1	7709	7709		24.991	3.454	1	422560	+		42028	17249	24205	24206	51408	51408					0.04630037425772571
SCSLPQKHK	9	Unmodified	_SCSLPQKHK_					0	0	0		ENST00000373115.4_1_10:73772566-73772710:+|nuORF	ENST00000373115.4_1_10:73772566-73772710:+|nuORF	ENST00000373115.4_1_10:73772566-73772710:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8141479492188	2	514.271301	1026.52805	-0.032634	-1.6783E-05	0.39741	0.00020438	0.36477	0.00018759	514.2715477829289	12.501	0.24986	12.501	12.332	12.582	0					12	7	2	0	0	0	0.25706	1	100	100		6.7232	0	1	21118			42029	9859	24206	24207	51409	51409					0.015846322856077677
SCSNNTHLV	9	Unmodified	_SCSNNTHLV_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.2929382324219	2	487.721641	973.428729	0.075833	3.6986E-05	0.43411	0.00021172	0.50994	0.00024871	487.72165468043636	15.813	0.32894	15.813	15.679	16.008	0					17	11	2	0	0	0	0.25988	1	1197	1197		3.9444	1.8846	1	28260			42030	6298	24207	24208	51410	51410					-0.059048103991244716
SCSSPRAPRL	10	Unmodified	_SCSSPRAPRL_					0	0	0		ENST00000467310.1_1_X:118763302-118763380:-|nuORF	ENST00000467310.1_1_X:118763302-118763380:-|nuORF	ENST00000467310.1_1_X:118763302-118763380:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2908325195312	2	537.279657	1072.54476	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.174	1	44.174	43.674	44.674	0								0	0	0	0.35611	1	9768	9768		12.241	1.1262	1				42031	10822	24208	24209	51411	51411					0.011391331715913111
SCSWFHDHL	9	Unmodified	_SCSWFHDHL_					0	0	0			REV__ENSG00000186480|ENST00000340368|INSIG1;REV__nc|ENSG00000186480|O15503-2|INSIG1	REV__nc|ENSG00000186480|O15503-2|INSIG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.2372436523438	2	566.237458	1130.46036	-0.039776	-2.2523E-05	-0.87638	-0.00049624	-0.91616	-0.00051876	566.2371910393063	14.731	0.44908	14.731	14.531	14.981	0					49	15	5	0	0	0	0.28128	1	809	809		11.64	1.5664	1	354730	+		42032	18450;23140	24209	24210	51412	51412					-0.09964817645186486
SCSWFHDHL	9	Unmodified	_SCSWFHDHL_					0	0	0			REV__ENSG00000186480|ENST00000340368|INSIG1;REV__nc|ENSG00000186480|O15503-2|INSIG1	REV__nc|ENSG00000186480|O15503-2|INSIG1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	566.237458	1130.46036	0.13115	7.4263E-05	-0.66449	-0.00037626	-0.53334	-0.000302	566.2372387877348	14.866	0.53415	14.756	14.587	15.121	-0.10981	-0.026435	0.00011075	NaN	11.64	49	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412970	+		42033	18450;23140	24209	24210							-0.09964817645186486
SCYLNIGACL	10	Unmodified	_SCYLNIGACL_					0	0	0		ENSG00000131634|ENST00000566264|TMEM204	ENSG00000131634|ENST00000566264|TMEM204	ENSG00000131634|ENST00000566264|TMEM204	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3040161132812	2	528.74627	1055.47799	0.63328	0.00033484	-0.30783	-0.00016276	0.32545	0.00017208	528.7460334731052	40.218	0.65599	40.318	40.01	40.666	0.099407					41	23	2	0	0	0	0.3144	1	8585	8585		13.042	6.3193	1	432940			42034	3578	24210	24211	51413	51413					-0.04753238434545892
SCYLQLCPAL	10	Unmodified	_SCYLQLCPAL_					0	0	0		ENSG00000162771|ENST00000294829|GARIN4	ENSG00000162771|ENST00000294829|GARIN4	ENSG00000162771|ENST00000294829|GARIN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7698364257812	2	555.769745	1109.52494	0.30282	0.0001683	-0.38088	-0.00021168	-0.078057	-4.3382E-05	555.7696293864842	69.266	0.59833	69.332	69.038	69.637	0.066048					53	20	3	0	0	0	0.31867	1	17485	17485		18.146	0	1	878410			42035	5615	24211	24212	51414	51414					-0.02544378883385434
SDARLLLL	8	Unmodified	_SDARLLLL_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7790832519531	2	450.779285	899.544017	0.32457	0.00014631	-0.20045	-9.0359E-05	0.12412	5.5951E-05	450.7790042998784	64.099	0.8126	64.192	63.848	64.66	0.09288					73	29	4	0	0	0	0.13277	1	15878	15878		54.774	0	1	838300	+		42036	14358	24212	24213	51415	51415					0.09022661794188025
SDARLLLL	8	Unmodified	_SDARLLLL_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7791442871094	2	450.779285	899.544017	0.43225	0.00019485	-0.46099	-0.00020781	-0.028745	-1.2958E-05	450.7789493668473	64.19	0.81075	64.18	63.881	64.691	-0.0095291					60	29	3	0	0	0	0.095164	1	15928	15928		61.357	0	1	911460	+		42037	14358	24212	24213	51416	51416					0.09022661794188025
SDARLLLL	8	Unmodified	_SDARLLLL_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	450.779285	899.544017	0.32457	0.00014631	-0.20045	-9.0359E-05	0.12412	5.5951E-05	450.7790042998784	64.099	0.8126	64.192	63.848	64.66	0.09288	0.0035169	0.00017238	NaN	61.357	73	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	838300	+		42038	14358	24212	24213							0.09022661794188025
SDARLLLL	8	Unmodified	_SDARLLLL_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	450.779285	899.544017	0.43225	0.00019485	-0.46099	-0.00020781	-0.028745	-1.2958E-05	450.7789493668473	64.19	0.81075	64.18	63.881	64.691	-0.0095291	-0.0077602	-6.252E-05	NaN	61.357	60	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	911460	+		42039	14358	24212	24213							0.09022661794188025
SDDEDSDF	8	Unmodified	_SDDEDSDF_					0	0	0			REV__ENST00000467873.1_1_3:183882564-183882771:+|nuORF	REV__ENST00000467873.1_1_3:183882564-183882771:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7774353027344	2	465.153977	928.293401	0.16892	7.8574E-05	2.3147	0.0010767	2.4836	0.0011553	465.15497602460607	69.946	0.57487	69.924	69.673	70.248	-0.022087					27	20	2	0	0	0	0.344	1	17640	17640		2.5775	0	1	83306	+		42040	21310	24213	24214	51417	51417					-0.17361431779738723
SDDEDSDF	8	Unmodified	_SDDEDSDF_					0	0	0			REV__ENST00000467873.1_1_3:183882564-183882771:+|nuORF	REV__ENST00000467873.1_1_3:183882564-183882771:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	465.153977	928.293401	-0.058469	-2.7197E-05	2.4532	0.0011411	2.3948	0.0011139	465.1550118948696	69.977	0.36823	69.977	69.815	70.183	0	0.026714	3.8048E-05	NaN	2.5775	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69540	+		42041	21310	24213	24214							-0.17361431779738723
SDEENCGCK	9	Unmodified	_SDEENCGCK_					0	0	0		nc|ENSG00000145244|Q9Y5Q5-2|CORIN;ENSG00000145244|ENST00000273857|CORIN	nc|ENSG00000145244|Q9Y5Q5-2|CORIN	nc|ENSG00000145244|Q9Y5Q5-2|CORIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.6739807128906	2	492.673499	983.332445	0.33097	0.00016306	-0.96565	-0.00047575	-0.63469	-0.00031269	492.67378914437955	17.255	2.1305	17.255	15.947	18.077	0					220	73	4	0	0	0	0.3208	2	1667	1621;1667		5.7319	1.4026	1	701270			42042	4640	24214	24215	51418;51419	51419					-0.1598874602137812
SDEENCGCK	9	Unmodified	_SDEENCGCK_					0	0	0		nc|ENSG00000145244|Q9Y5Q5-2|CORIN;ENSG00000145244|ENST00000273857|CORIN	nc|ENSG00000145244|Q9Y5Q5-2|CORIN	nc|ENSG00000145244|Q9Y5Q5-2|CORIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.6738586425781	2	492.673499	983.332445	0.15918	7.8422E-05	-0.5615	-0.00027664	-0.40232	-0.00019821	492.67390432757725	15.173	1.1773	15.064	14.847	16.025	-0.10981					119	40	5	0	0	0	0.3208	1	1046	1046		5.7319	0.50118	1	999650			42043	4640	24214	24215	51420	51420					-0.1598874602137812
SDEENCGCK	9	Unmodified	_SDEENCGCK_					0	0	0		nc|ENSG00000145244|Q9Y5Q5-2|CORIN;ENSG00000145244|ENST00000273857|CORIN	nc|ENSG00000145244|Q9Y5Q5-2|CORIN	nc|ENSG00000145244|Q9Y5Q5-2|CORIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.6741638183594	2	492.673499	983.332445	0.17642	8.6919E-05	-0.69088	-0.00034038	-0.51446	-0.00025346	492.6738948194929	17.571	2.1055	17.454	15.984	18.089	-0.11739					234	74	4	0	0	0	0.30064	3	1490	1490;1639;1682		8.7454	3.5147	1	759800			42044	4640	24214	24215	51421;51422;51423	51421					-0.1598874602137812
SDEENCGCK	9	Unmodified	_SDEENCGCK_					0	0	0		nc|ENSG00000145244|Q9Y5Q5-2|CORIN;ENSG00000145244|ENST00000273857|CORIN	nc|ENSG00000145244|Q9Y5Q5-2|CORIN	nc|ENSG00000145244|Q9Y5Q5-2|CORIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.6739807128906	2	492.673499	983.332445	0.34991	0.00017239	-0.86553	-0.00042642	-0.51562	-0.00025403	492.6738043333278	17.352	2.1883	17.291	16.008	18.197	-0.060429					234	77	4	0	0	0	0.3208	1	1646	1646		5.7319	1.4026	1	769450			42045	4640	24214	24215	51424	51424					-0.1598874602137812
SDFKDFIFD	9	Unmodified	_SDFKDFIFD_					0	0	0		ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2789306640625	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.09	1	114.09	113.59	114.59	0								0	0	0	0.25197	1	29613	29613		5.7319	0	1				42046	2943	24215	24216	51425	51425					-0.053262598931723915
SDFKDFIFD	9	Unmodified	_SDFKDFIFD_					0	0	0		ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	ENSG00000120440|ENST00000239587|TTLL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.279296875	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.04	1	117.04	116.54	117.54	0								0	0	0	0.25858	1	30282	30282		3.5965	0	1				42047	2943	24215	24216	51426	51426					-0.053262598931723915
SDFLQKMD	8	Unmodified	_SDFLQKMD_					0	0	0		nc|ENSG00000175505|Q9UBD9-2|CLCF1;ENSG00000175505|ENST00000312438|CLCF1	nc|ENSG00000175505|Q9UBD9-2|CLCF1	nc|ENSG00000175505|Q9UBD9-2|CLCF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2469482421875	2	492.228768	982.442982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.253	1	24.253	23.753	24.753	0								0	0	0	0.34492	1	3694	3694		16.942	4.4107	1				42048	6869	24216	24217	51427	51427					-0.048941579708412064
SDFSHPHYLA	10	Unmodified	_SDFSHPHYLA_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;ENST00000577409.1_1_18:72183591-72185955:+|nuORF	nc|ENSG00000133313|Q96KP4-2|CNDP2;ENST00000577409.1_1_18:72183591-72185955:+|nuORF	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.3187255859375	2	587.269813	1172.52507	0.73232	0.00043007	0.44398	0.00026074	1.1763	0.00069081	587.2700842199298	50.833	1.0739	50.833	50.407	51.481	0					61	39	2	0	0	0	0.30079	1	11732	11732		20.454	20.454	1	1044800			42049	3705;12054	24217	24218	51428	51428					-0.05428919567521007
SDGASALPGP	10	Unmodified	_SDGASALPGP_					0	0	0		nc|ENSG00000184507|Q86Y26|NUTM1;ENSG00000184507|ENST00000537011|NUTM1;nc|ENSG00000184507|Q86Y26-2|NUTM1	nc|ENSG00000184507|Q86Y26|NUTM1	nc|ENSG00000184507|Q86Y26|NUTM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.24737548828125	2	436.211432	870.408311	-0.15524	-6.7716E-05	0.52659	0.0002297	0.37135	0.00016199	436.2116072836483	34.011	0.80387	34.077	33.799	34.603	0.066704					59	28	3	0	0	0	0.3156	1	6811	6811		6.7232	0	1	607630			42050	7459	24218	24219	51429	51429					-0.03207657787277185
SDGHRGATIQ	10	Unmodified	_SDGHRGATIQ_					0	0	0			REV__CON__P04264	REV__CON__P04264	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2567138671875	2	521.257237	1040.49992	0.091646	4.7771E-05	-1.1043	-0.00057564	-1.0127	-0.00052787	521.2564487767047	12.789	0.31177	12.789	12.641	12.952	0					16	10	2	0	0	0	0.40262	1	229	229		2.9952	0.26005	1	66934	+	+	42051	13252	24219	24220	51430	51430					-0.018709743700810577
SDGVKVRLK	9	Unmodified	_SDGVKVRLK_					0	0	0			REV__ENST00000296255.7_1_3:128356748-128363813:-|nuORF	REV__ENST00000296255.7_1_3:128356748-128363813:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2999267578125	2	501.308741	1000.60293	0.0093494	4.6869E-06	0.73744	0.00036969	0.74679	0.00037437	501.3090670620389	12.83	0.58663	12.83	12.641	13.227	0					36	20	2	0	0	0	0.31038	1	360	360		7.2892	2.5332	1	198150	+		42052	19790	24220	24221	51431	51431					0.10265138088527692
SDHHWCIPF	9	Unmodified	_SDHHWCIPF_					0	0	0		nc|ENSG00000148053|Q16620-7|NTRK2;nc|ENSG00000148053|Q16620-2|NTRK2;nc|ENSG00000148053|Q16620-3|NTRK2;nc|ENSG00000148053|Q16620-5|NTRK2;nc|ENSG00000148053|Q16620-6|NTRK2;nc|ENSG00000148053|Q16620|NTRK2;ENSG00000148053|ENST00000277120|NTRK2	nc|ENSG00000148053|Q16620-7|NTRK2	nc|ENSG00000148053|Q16620-7|NTRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2481689453125	2	571.247826	1140.4811	0.86762	0.00049563	0.037959	2.1684E-05	0.90558	0.00051731	571.247773666659	56.284	0.73764	56.265	55.991	56.729	-0.019081					73	26	4	0	0	0	0.23775	2	13463	13463;13513		18.135	1.1927	1	3774800			42053	4790	24221	24222	51432;51433	51432					-0.0835222726552729
SDIGLLYIR	9	Unmodified	_SDIGLLYIR_					0	0	0		ENSG00000109927|ENST00000392793|TECTA	ENSG00000109927|ENST00000392793|TECTA	ENSG00000109927|ENST00000392793|TECTA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2980346679688	2	525.303124	1048.5917	0.87371	0.00045896	3.6477	0.0019162	4.5214	0.0023751	525.3041101379519	50.925	0.53963	50.925	50.569	51.108	0					34	19	3	0	0	0	0.11397	1	11896	11896		49.933	6.0747	1	291560			42054	2281	24222	24223	51434	51434					0.06934315994340068
SDIGLLYIR	9	Unmodified	_SDIGLLYIR_					0	0	0		ENSG00000109927|ENST00000392793|TECTA	ENSG00000109927|ENST00000392793|TECTA	ENSG00000109927|ENST00000392793|TECTA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2965087890625	2	525.303124	1048.5917	0.81463	0.00042793	3.3365	0.0017527	4.1512	0.0021806	525.3041472599033	51.015	0.73654	51.024	50.484	51.22	0.0095673					41	27	3	0	0	0	0.11397	1	11911	11911		41.84	9.5341	1	392240			42055	2281	24222	24223	51435	51435					0.06934315994340068
SDIGLLYIR	9	Unmodified	_SDIGLLYIR_					0	0	0		ENSG00000109927|ENST00000392793|TECTA	ENSG00000109927|ENST00000392793|TECTA	ENSG00000109927|ENST00000392793|TECTA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	525.303124	1048.5917	0.64823	0.00034052	0.88671	0.00046579	1.5349	0.00080631	525.304317406041	51.008	0.16436	51.055	50.9	51.064	0.046574	0.053435	-0.0021655	NaN	58.679	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249390			42056	2281	24222	24223							0.06934315994340068
SDIPHMLN	8	Unmodified	_SDIPHMLN_					0	0	0		ENSG00000171262|ENST00000397609|FAM98B;ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B	ENSG00000171262|ENST00000397609|FAM98B	ENSG00000171262|ENST00000397609|FAM98B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7239074707031	2	463.723652	925.432752	0.32434	0.0001504	0.36654	0.00016997	0.69088	0.00032038	463.72376952335895	86.928	0.66483	86.923	86.67	87.335	-0.0056229					53	27	3	0	0	0	0.43043	1	22898	22898		12.532	12.532	1	356980			42057	6531	24223	24224	51436	51436					-0.032947209053986626
SDIQKQYDII	10	Unmodified	_SDIQKQYDII_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.56927490234375	3	408.215316	1221.62412	-0.074762	-3.0519E-05	3.6107	0.0014739	3.5359	0.0014434	408.55158196365255	16.305	0.34431	16.242	16.006	16.351	-0.062534					15	11	2	0	0	0	0.32137	1	1244	1244		1.7423	0.28716	1	31880	+		42058	18848	24224	24225	51437	51437					0.022170586067204567
SDIQKQYDII	10	Unmodified	_SDIQKQYDII_					0	0	0			REV__ENSG00000198707|ENST00000552810|CEP290	REV__ENSG00000198707|ENST00000552810|CEP290	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	408.215316	1221.62412	-0.18239	-7.4456E-05	8.0384	0.0032814	7.8561	0.003207	408.21867265954285	16.514	0.33904	16.399	16.247	16.586	-0.11434	0.078634	0.0018764	NaN	1.7423	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18493	+		42059	18848	24224	24225							0.022170586067204567
SDKHCHFKF	9	Unmodified	_SDKHCHFKF_					0	0	0		LTR19B_dup80|chr6:106743802-106744351:-|4.284117748742692|0.4191254365420057|3.35|537.0|1|1|sense	LTR19B_dup80|chr6:106743802-106744351:-|4.284117748742692|0.4191254365420057|3.35|537.0|1|1|sense	LTR19B_dup80|chr6:106743802-106744351:-|4.284117748742692|0.4191254365420057|3.35|537.0|1|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3170776367188	2	574.768926	1147.5233	0.49389	0.00028387	1.6171	0.00092945	2.111	0.0012133	574.7704100630476	63.963	0.91171	64.055	63.618	64.53	0.092884					50	32	3	0	0	0	0.25526	1	15910	15910		7.9102	0	1	246010			42060	12509	24225	24226	51438	51438					-0.04456251857118332
SDKITFIAP	9	Unmodified	_SDKITFIAP_					0	0	0			REV__ENST00000535644.1_1_11:67163166-67165027:+|nuORF	REV__ENST00000535644.1_1_11:67163166-67165027:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.78424072265625	2	496.276575	990.538597	0.5959	0.00029573	0.60879	0.00030213	1.2047	0.00059786	496.2763676872391	85.072	2.6204	85.153	84.101	86.722	0.080879					302	102	7	0	0	0	0.27532	1	22243	22243		12.532	3.1484	1	6735700	+		42061	17725	24226	24227	51439	51439					0.04294938211705812
SDKLYKENYEK	11	Unmodified	_SDKLYKENYEK_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.E6206Gfs*23|1|0.69|ENSG00000183091|chr2:151505500-151505500|T/-|frameshift_variant;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.K4379*|1|0.19|ENSG00000183091|chr2:151565739-151565740|-/A|frameshift_variant;NEB|p.L1554Ffs*23|1|0.04|ENSG00000183091|chr2:151667861-151667862|-/TACAGAAATAAAA|frameshift_variant;NEB|p.K2203Tfs*13|1|0.13|ENSG00000183091|chr2:151655908-151655911|TATT/-|frameshift_variant;NEB|p.T891Lfs*66|1|0.37|ENSG00000183091|chr2:151684942-151684942|T/-|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7747802734375	3	472.90503	1415.69326	-0.08632	-4.0821E-05	-0.45079	-0.00021318	-0.53711	-0.000254	472.90450556752455	14.69	0.41296	14.624	14.483	14.896	-0.066068					18	14	2	0	0	0	0.33334	1	776	776		1.2148	0	1	23747			42062	7345	24227	24228	51440	51440					0.0020409783562627126
SDKWIKPI	8	Unmodified	_SDKWIKPI_					0	0	0			REV__ENST00000469585.5_1_2:86355098-86362111:+|nuORF	REV__ENST00000469585.5_1_2:86355098-86362111:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7875671386719	2	493.78711	985.559667	0.695	0.00034318	-0.15768	-7.7861E-05	0.53732	0.00026532	493.7869858477701	50.936	1.5886	50.936	49.976	51.565	0					136	58	3	0	0	0	0.3474	1	11712	11712		25.399	0	1	1328400	+		42063	15557	24228	24229	51441	51441					0.06630948311226348
SDKWIKPI	8	Unmodified	_SDKWIKPI_					0	0	0			REV__ENST00000469585.5_1_2:86355098-86362111:+|nuORF	REV__ENST00000469585.5_1_2:86355098-86362111:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.78729248046875	2	493.78711	985.559667	0.74698	0.00036885	-0.27565	-0.00013611	0.47133	0.00023274	493.7869665881724	50.991	1.6101	51.001	50.002	51.612	0.0095634					143	60	3	0	0	0	0.3474	1	11748	11748		25.399	0	1	1443300	+		42064	15557	24228	24229	51442	51442					0.06630948311226348
SDLKPRKTT	9	Unmodified	_SDLKPRKTT_					0	0	0		ENST00000573823.5_1_17:55055520-55064652:+|nuORF;ENST00000571345.5_1_17:55055520-55072276:+|nuORF;ENST00000571898.5_1_17:55055520-55072831:+|nuORF;nc|ENSG00000121064|Q9HB40-2|SCPEP1;ENSG00000121064|ENST00000262288|SCPEP1	ENST00000573823.5_1_17:55055520-55064652:+|nuORF	ENST00000573823.5_1_17:55055520-55064652:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3034057617188	2	523.303655	1044.59276	0.22202	0.00011618	0.18085	9.464E-05	0.40287	0.00021082	523.3034281040123	114.42	0.21515	114.4	114.29	114.5	-0.019096					44	22	3	0	0	0	0.26168	1	29724	29724		1.8442	0	1	27841			42065	2986	24229	24230	51443	51443					0.07224530363282611
SDNCHVWF	8	Unmodified	_SDNCHVWF_					0	0	0			REV__ENSG00000164663|ENST00000682992|USP49;REV__ENSG00000136014|ENST00000258499|USP44	REV__ENSG00000136014|ENST00000258499|USP44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.20703125	2	504.205627	1006.3967	0.68268	0.00034421	0.0044369	2.2371E-06	0.68712	0.00034645	504.2057650543032	77.766	0.90321	77.822	77.456	78.359	0.055412					119	32	6	0	0	0	0.34337	1	20202	20202		5.2307	5.2307	1	1869300	+		42066	17172;15780	24230	24231	51444	51444					-0.10624178082252911
SDNKAPYDIS	10	Unmodified	_SDNKAPYDIS_					0	0	0			REV__ENSG00000171940|ENST00000371471|ZNF217	REV__ENSG00000171940|ENST00000371471|ZNF217	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8224487304688	2	555.259111	1108.50367	0.21934	0.00012179	-1.5419	-0.00085618	-1.3226	-0.00073439	555.2582669155214	19.397	0.7226	19.281	18.947	19.67	-0.11592					44	24	2	0	0	0	0.32072	1	2169	2169		2.9952	1.151	1	45312	+		42067	17680	24231	24232	51445	51445					-0.046243493869269514
SDPEEDEDEDD	11	Unmodified	_SDPEEDEDEDD_					0	0	0		ENSG00000130675|ENST00000252971|MNX1;nc|ENSG00000130675|P50219-2|MNX1	ENSG00000130675|ENST00000252971|MNX1	ENSG00000130675|ENST00000252971|MNX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.7069091796875	2	647.707499	1293.40044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.397	1	96.397	95.897	96.897	0								0	0	0	0.3823	1	25755	25755		0	0	1				42068	3495	24232	24233	51446	51446					-0.23451971146710093
SDPLPILLRKM	11	Unmodified	_SDPLPILLRKM_					0	0	0			REV__ENSG00000182263|ENST00000333129|FIGN	REV__ENSG00000182263|ENST00000333129|FIGN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8826293945312	2	641.881216	1281.74788	0.25571	0.00016413	2.3752	0.0015246	2.6309	0.0016887	641.8821089917124	111.72	0.31555	111.71	111.53	111.85	-0.015617					48	37	2	0	0	0	0.47546	2	29061	29061;29102		1.3295	0.13619	1	106650	+		42069	18187	24233	24234	51447;51448	51447					0.11827438173349947
SDPLPILLRKM	11	Unmodified	_SDPLPILLRKM_					0	0	0			REV__ENSG00000182263|ENST00000333129|FIGN	REV__ENSG00000182263|ENST00000333129|FIGN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	641.881216	1281.74788	-0.017252	-1.1074E-05	2.7859	0.0017882	2.7686	0.0017771	641.8825361209452	111.45	0.25562	111.45	111.38	111.63	0	-0.12838	0.0002444	NaN	1.3295	53	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104620	+		42070	18187	24233	24234							0.11827438173349947
SDPVQRIE	8	Unmodified	_SDPVQRIE_					0	0	0		nc|ENSG00000105879|Q75N03-2|CBLL1;ENSG00000105879|ENST00000440859|CBLL1	nc|ENSG00000105879|Q75N03-2|CBLL1	nc|ENSG00000105879|Q75N03-2|CBLL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7559509277344	2	472.245806	942.47706	-0.0019741	-9.3224E-07	0.014602	6.896E-06	0.012628	5.9637E-06	472.2458112047869	31.031	0.47866	31.031	30.753	31.231	0					22	16	2	0	0	0	0.32886	1	5699	5699		10.824	0	1	80979			42071	2034	24234	24235	51449	51449					0.0035200651242348613
SDQFPLPLK	9	Unmodified	_SDQFPLPLK_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7899780273438	2	522.78985	1043.56515	0.59014	0.00030852	-0.31219	-0.00016321	0.27794	0.00014531	522.7895852457866	55.195	1.1459	55.195	54.708	55.854	0					115	41	4	0	0	0	0.0008224	1	13204	13204		125.04	66.359	1	3212100			42072	1219	24235	24236	51450	51450					0.04510627103036313
SDQFPLPLK	9	Unmodified	_SDQFPLPLK_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7899780273438	2	522.78985	1043.56515	0.6716	0.0003511	-0.37779	-0.0001975	0.29381	0.0001536	522.7895439986896	55.102	1.0198	55.173	54.758	55.777	0.070885					115	37	4	0	0	0	0.0023895	1	13169	13169		107.1	53.267	1	3342400			42073	1219	24235	24236	51451	51451					0.04510627103036313
SDQFPLPLK	9	Unmodified	_SDQFPLPLK_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	nc|ENSG00000083312|Q92973-3|TNPO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7901000976562	2	522.78985	1043.56515	0.62486	0.00032667	-0.40059	-0.00020942	0.22427	0.00011724	522.789664266694	55.312	1.5566	55.293	54.358	55.915	-0.019081					131	56	4	0	0	0	0.0013864	1	13164	13164		117.84	67.905	1	2939800			42074	1219	24235	24236	51452	51452					0.04510627103036313
SDQLKQLFFPF	11	Unmodified	_SDQLKQLFFPF_					0	0	0			REV__ENST00000349457.7_1_16:57576486-57576588:+|nuORF	REV__ENST00000349457.7_1_16:57576486-57576588:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.24310302734375	3	457.243206	1368.70779	0.18549	8.4816E-05	-0.081227	-3.7141E-05	0.10427	4.7676E-05	457.2430866389234	53.062	1.1189	53.062	52.63	53.749	0					127	41	4	0	0	0	0.42582	1	12479	12479		7.846	1.9779	1	2792000	+		42075	20161	24236	24237	51453	51453					0.03818214774400985
SDQLKQLFFPF	11	Unmodified	_SDQLKQLFFPF_					0	0	0			REV__ENST00000349457.7_1_16:57576486-57576588:+|nuORF	REV__ENST00000349457.7_1_16:57576486-57576588:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2431640625	3	457.243206	1368.70779	0.38619	0.00017658	-0.30034	-0.00013733	0.085853	3.9256E-05	457.24300965829906	52.987	1.2926	53.043	52.687	53.98	0.056259					123	47	4	0	0	0	0.41517	2	12454	12454;12507		9.2438	2.6203	1	2863600	+		42076	20161	24236	24237	51454;51455	51454					0.03818214774400985
SDQLKQLFFPF	11	Unmodified	_SDQLKQLFFPF_					0	0	0			REV__ENST00000349457.7_1_16:57576486-57576588:+|nuORF	REV__ENST00000349457.7_1_16:57576486-57576588:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	457.243206	1368.70779	0.38619	0.00017658	-0.30034	-0.00013733	0.085853	3.9256E-05	457.24300965829906	52.987	1.2926	53.043	52.687	53.98	0.056259	-0.057506	-0.00019466	NaN	9.2438	123	47	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2863600	+		42077	20161	24236	24237							0.03818214774400985
SDQLKQLFFPF	11	Unmodified	_SDQLKQLFFPF_					0	0	0			REV__ENST00000349457.7_1_16:57576486-57576588:+|nuORF	REV__ENST00000349457.7_1_16:57576486-57576588:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	457.243206	1368.70779	0.22634	0.00010349	-0.11035	-5.0456E-05	0.11599	5.3036E-05	457.2431012848155	53.207	1.3879	53.197	52.761	54.149	-0.0096054	0.09599	6.5957E-05	NaN	9.2438	137	51	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2896400	+		42078	20161	24236	24237							0.03818214774400985
SDRLLSTI	8	Unmodified	_SDRLLSTI_					0	0	0			REV__ENST00000601870.1_3_19:7599674-7599782:+|nuORF	REV__ENST00000601870.1_3_19:7599674-7599782:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.7525634765625	2	452.758549	903.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.464	1	66.464	65.964	66.964	0								0	0	0	0.1231	1	16637	16637		57.471	6.6163	1		+		42079	22638	24237	24238	51456	51456					0.04693481034871638
SDRLLSTI	8	Unmodified	_SDRLLSTI_					0	0	0			REV__ENST00000601870.1_3_19:7599674-7599782:+|nuORF	REV__ENST00000601870.1_3_19:7599674-7599782:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.7528381347656	2	452.758549	903.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.621	1	66.621	66.121	67.121	0								0	0	0	0.15994	1	16685	16685		50.855	0	1		+		42080	22638	24237	24238	51457	51457					0.04693481034871638
SDSDDETETVK	11	Unmodified	_SDSDDETETVK_					0	0	0			REV__FIP1L1|p.D156Efs*50|1|0.33|ENSG00000145216|chr4:53390587-53390588|-/AG|frameshift_variant	REV__FIP1L1|p.D156Efs*50|1|0.33|ENSG00000145216|chr4:53390587-53390588|-/AG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.1742858886719	3	409.173733	1224.49937	-0.088294	-3.6128E-05	0.90527	0.00037041	0.81698	0.00033429	409.1744948307446	17.173	0.81972	17.173	16.779	17.598	0					90	28	4	0	0	0	0.44088	1	1476	1476		5.8681	2.2755	1	325560	+		42081	16284	24238	24239	51458	51458					-0.1038990339116026
SDSDDETETVK	11	Unmodified	_SDSDDETETVK_					0	0	0			REV__FIP1L1|p.D156Efs*50|1|0.33|ENSG00000145216|chr4:53390587-53390588|-/AG|frameshift_variant	REV__FIP1L1|p.D156Efs*50|1|0.33|ENSG00000145216|chr4:53390587-53390588|-/AG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.1745300292969	3	409.173733	1224.49937	-0.088294	-3.6128E-05	0.90527	0.00037041	0.81698	0.00033429	409.1744948307446	17.173	0.81972	17.173	16.779	17.598	0					90	28	4	0	0	0	0.33056	1	1525	1525		8.7518	5.1591	1	325560	+		42082	16284	24238	24239	51459	51459					-0.1038990339116026
SDSDDETETVK	11	Unmodified	_SDSDDETETVK_					0	0	0			REV__FIP1L1|p.D156Efs*50|1|0.33|ENSG00000145216|chr4:53390587-53390588|-/AG|frameshift_variant	REV__FIP1L1|p.D156Efs*50|1|0.33|ENSG00000145216|chr4:53390587-53390588|-/AG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.17431640625	3	409.173733	1224.49937	-0.1241	-5.078E-05	0.70789	0.00028965	0.58379	0.00023887	409.1744844950249	17.323	0.92181	17.206	16.772	17.694	-0.11739					116	32	5	0	0	0	0.43809	1	1516	1516		6.2344	2.3884	1	298410	+		42083	16284	24238	24239	51460	51460					-0.1038990339116026
SDSDDETETVK	11	Unmodified	_SDSDDETETVK_					0	0	0			REV__FIP1L1|p.D156Efs*50|1|0.33|ENSG00000145216|chr4:53390587-53390588|-/AG|frameshift_variant	REV__FIP1L1|p.D156Efs*50|1|0.33|ENSG00000145216|chr4:53390587-53390588|-/AG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.1741943359375	3	409.173733	1224.49937	-0.1241	-5.078E-05	0.70789	0.00028965	0.58379	0.00023887	409.1744844950249	17.323	0.92181	17.206	16.772	17.694	-0.11739					116	32	5	0	0	0	0.3325	1	1568	1568		4.1166	1.0444	1	298410	+		42084	16284	24238	24239	51461	51461					-0.1038990339116026
SDSDDETETVK	11	Unmodified	_SDSDDETETVK_					0	0	0			REV__FIP1L1|p.D156Efs*50|1|0.33|ENSG00000145216|chr4:53390587-53390588|-/AG|frameshift_variant	REV__FIP1L1|p.D156Efs*50|1|0.33|ENSG00000145216|chr4:53390587-53390588|-/AG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.1742248535156	3	409.173733	1224.49937	0.11653	4.7679E-05	0.77561	0.00031736	0.89214	0.00036504	409.17439994606264	17.06	0.89356	17	16.756	17.65	-0.060429					107	31	4	0	0	0	0.3287	1	1530	1530		12.228	6.3594	1	318950	+		42085	16284	24238	24239	51462	51462					-0.1038990339116026
SDSDEEKK	8	Unmodified	_SDSDEEKK_					0	0	0		nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.2094421386719	2	469.209086	936.40362	-0.093058	-4.3664E-05	0.87689	0.00041144	0.78383	0.00036778	469.2095018574872	22.74	0.86342	22.653	22.352	23.216	-0.087608					43	30	2	0	0	0	0.41087	1	3235	3235		18.146	0.011366	1	116160			42086	2488	24239	24240	51463	51463					-0.06712586720698255
SDSECCNIN	9	Unmodified	_SDSECCNIN_					0	0	0		nc|ENSG00000119946|Q9NRU3-2|CNNM1;ENSG00000119946|ENST00000356713|CNNM1	nc|ENSG00000119946|Q9NRU3-2|CNNM1	nc|ENSG00000119946|Q9NRU3-2|CNNM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.6739807128906	2	492.673499	983.332445	0.060228	2.9673E-05	-0.84355	-0.00041559	-0.78332	-0.00038592	492.6739082749291	15.177	1.1666	15.112	14.898	16.064	-0.064414					114	39	5	0	0	0	0.24467	1	931	931		17.113	4.5813	1	1177500			42087	2918	24240	24241	51464	51464					-0.15988746021389488
SDSKYPMKRI	10	Unmodified	_SDSKYPMKRI_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.867919921875	3	408.885024	1223.63324	0.25105	0.00010265	0.15899	6.501E-05	0.41004	0.00016766	408.88504348780003	50.367	1.2922	50.367	50.138	51.43	0					67	47	2	0	0	0	0.3156	1	11988	11988		6.1918	2.8722	1	465730			42088	8424	24241	24242	51465	51465					0.03037128691403268
SDSREKPMWL	10	Unmodified	_SDSREKPMWL_					0	0	0		ENSG00000205929|ENST00000479548|C21orf62	ENSG00000205929|ENST00000479548|C21orf62	ENSG00000205929|ENST00000479548|C21orf62	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.5432434082031	3	416.872895	1247.59686	-1.1679	-0.00048687	-0.38224	-0.00015934	-1.5501	-0.00064621	416.8727102036832	34.907	0.9592	34.982	34.47	35.429	0.075302					54	34	2	0	0	0	0.31701	1	7037	7037		7.4771	4.1213	1	532450			42089	8309	24242	24243	51466	51466					-0.017037482052955966
SDSREKPMWL	10	Unmodified	_SDSREKPMWL_					0	0	0		ENSG00000205929|ENST00000479548|C21orf62	ENSG00000205929|ENST00000479548|C21orf62	ENSG00000205929|ENST00000479548|C21orf62	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.5433044433594	3	416.872895	1247.59686	-0.75539	-0.0003149	-0.73574	-0.00030671	-1.4911	-0.00062161	416.87261504526896	34.906	1.0509	34.983	34.39	35.441	0.077377					56	37	2	0	0	0	0.31597	1	7026	7026		8.4443	4.0382	1	424670			42090	8309	24242	24243	51467	51467					-0.017037482052955966
SDVSFLRAPP	10	Unmodified	_SDVSFLRAPP_					0	0	0			REV__ENSG00000186790|ENST00000335071|FOXE3	REV__ENSG00000186790|ENST00000335071|FOXE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.80908203125	2	544.790381	1087.56621	0.51292	0.00027943	-0.070346	-3.8324E-05	0.44257	0.00024111	544.7901827545089	24.345	0.45816	24.306	24.049	24.507	-0.038927					29	15	3	0	0	0	0.36786	1	3756	3756		9.3831	3.1773	1	115070	+		42091	18468	24243	24244	51468	51468					0.025928414719373905
SDWIPKKL	8	Unmodified	_SDWIPKKL_					0	0	0		ENSG00000129566|ENST00000262715|TEP1;nc|ENSG00000129566|Q99973-2|TEP1	ENSG00000129566|ENST00000262715|TEP1	ENSG00000129566|ENST00000262715|TEP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.78704833984375	2	493.78711	985.559667	0.74698	0.00036885	-0.27565	-0.00013611	0.47133	0.00023274	493.7869665881724	50.991	1.6101	51.001	50.002	51.612	0.0095634					143	60	3	0	0	0	0.28696	1	11652	11652		32.305	1.6689	1	1443300			42092	3433	24244	24245	51469	51469					0.06630948311226348
SDWSYEEDEE	10	Unmodified	_SDWSYEEDEE_					0	0	0			REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.7290649414062	2	644.728037	1287.44152	0.64	0.00041262	0.42248	0.00027238	1.0625	0.00068501	644.7287023887669	55.438	0.81827	55.509	55.14	55.958	0.070885					92	30	4	0	0	0	0.38515	1	13190	13190		6.2058	0.47393	1	1319900	+		42093	18118	24245	24246	51470	51470					-0.1907016531656609
SEALGLDQF	9	Unmodified	_SEALGLDQF_					0	0	0			REV__ENST00000425050.5_1_10:109631494-109803030:-|nuORF	REV__ENST00000425050.5_1_10:109631494-109803030:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2479248046875	2	490.24019	978.465826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.526	1	27.505	27.005	28.005	-0.021412								0	0	0	0.17683	1	4686	4686		28.487	0	1		+		42094	20894	24246	24247	51471	51471					-0.0242681558172535
SEAQLQQK	8	Unmodified	_SEAQLQQK_					0	0	0			REV__ENSG00000255587|ENST00000612677|RAB44	REV__ENSG00000255587|ENST00000612677|RAB44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.76348876953125	2	466.245806	930.47706	-0.087252	-4.0681E-05	-0.20477	-9.5474E-05	-0.29202	-0.00013615	466.2454565353385	23.583	0.53382	23.51	23.257	23.791	-0.072559					22	18	2	0	0	0	0.43043	1	3510	3510		12.532	0.89125	1	54753	+		42095	19246	24247	24248	51472	51472					0.009040065124281682
SECCQGNEP	9	Unmodified	_SECCQGNEP_					0	0	0			REV__ENST00000418370.6_1_3:123339058-123339328:-|nuORF	REV__ENST00000418370.6_1_3:123339058-123339328:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.66864013671875	2	483.668217	965.321881	0.33573	0.00016238	-1.7187	-0.00083128	-1.383	-0.0006689	483.66818078045486	21.349	1.5623	21.299	20.812	22.375	-0.049377					115	55	4	0	0	0	0.34681	1	2888	2888		1.8442	1.0506	1	540760	+		42096	20836	24248	24249	51473	51473					-0.1621672867580628
SEDIDPHKNF	10	Unmodified	_SEDIDPHKNF_					0	0	0		ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS	ENSG00000188107|ENST00000503581|EYS	ENSG00000188107|ENST00000503581|EYS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.2804565429688	2	601.277835	1200.54112	0.7153	0.00043009	2.4053	0.0014462	3.1206	0.0018763	601.2796884411339	58.557	0.55567	58.543	58.25	58.806	-0.014267					38	19	3	0	0	0	0.24105	1	14187	14187		27.629	2.6378	1	486200			42097	7729	24249	24250	51474	51474					-0.0511325812128689
SEDKRALAK	9	Unmodified	_SEDKRALAK_					0	0	0		ENST00000574864.1_1_6:137221518-137222013:-|nuORF	ENST00000574864.1_1_6:137221518-137222013:-|nuORF	ENST00000574864.1_1_6:137221518-137222013:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.76641845703125	2	509.288005	1016.56146	0.034574	1.7608E-05	-0.16704	-8.5073E-05	-0.13247	-6.7464E-05	509.28763282692665	15.635	0.43969	15.57	15.424	15.864	-0.064413					22	12	3	0	0	0	0.25066	1	1056	1056		11.64	3.7301	1	76750			42098	12040	24250	24251	51475	51475					0.053839573291725173
SEDRTKVEF	9	Unmodified	_SEDRTKVEF_					0	0	0			REV__ENST00000571541.5_1_17:7293706-7296729:-|nuORF	REV__ENST00000571541.5_1_17:7293706-7296729:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.759033203125	2	555.774928	1109.5353	-0.042593	-2.3672E-05	-0.75606	-0.0004202	-0.79865	-0.00044387	555.774408256232	15.137	0.40748	15.073	14.926	15.333	-0.064414					19	13	2	0	0	0	0.29638	1	945	945		9.3831	0.78985	1	78767	+		42099	18525	24251	24252	51476	51476					-0.015083566329394671
SEDRTKVEF	9	Unmodified	_SEDRTKVEF_					0	0	0			REV__ENST00000571541.5_1_17:7293706-7296729:-|nuORF	REV__ENST00000571541.5_1_17:7293706-7296729:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	555.774928	1109.5353	0.10157	5.6449E-05	-0.40596	-0.00022562	-0.30439	-0.00016917	555.774395801663	15.12	0.41123	15.01	14.847	15.259	-0.10982	-0.031346	0.00014748	NaN	9.3831	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69774	+		42100	18525	24251	24252							-0.015083566329394671
SEDRTKVEF	9	Unmodified	_SEDRTKVEF_					0	0	0			REV__ENST00000571541.5_1_17:7293706-7296729:-|nuORF	REV__ENST00000571541.5_1_17:7293706-7296729:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	555.774928	1109.5353	-0.042593	-2.3672E-05	-0.75606	-0.0004202	-0.79865	-0.00044387	555.774408256232	15.137	0.40748	15.073	14.926	15.333	-0.064414	0.031346	-0.00024167	NaN	9.3831	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78767	+		42101	18525	24251	24252							-0.015083566329394671
SEDSEKKMSP	10	Unmodified	_SEDSEKKMSP_					0	0	0		nc|ENSG00000216937|Q96M83-4|CCDC7;nc|ENSG00000216937|Q96M83-3|CCDC7;nc|ENSG00000216937|Q96M83-5|CCDC7;CCDC7|p.R194Ifs*11|1|0.11|ENSG00000216937|chr10:32726823-32726824|-/TCTCTATATTT|frameshift_variant;ENSG00000216937|ENST00000639629|CCDC7	nc|ENSG00000216937|Q96M83-4|CCDC7	nc|ENSG00000216937|Q96M83-4|CCDC7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.2767333984375	2	569.258253	1136.50195	0.16064	9.1447E-05	0.30807	0.00017537	0.46871	0.00026682	569.2584617718434	43.108	0.29439	43.192	43.061	43.356	0.083996					14	10	2	0	0	0	0.27059	1	9430	9430		24.021	2.2739	1	164880			42102	97	24252	24253	51477	51477					-0.060837264671590674
SEDVEMKR	8	Unmodified	_SEDVEMKR_					0	0	0			REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.3320007324219	2	497.237124	992.459695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.475	1	12.407	11.907	12.907	-0.06806								0	0	0	0.37724	1	137	137		2.3027	0	1		+		42103	16879	24253	24254	51478	51478					-0.03683657084877723
SEDWGTLYINY	11	Unmodified	_SEDWGTLYINY_					0	0	0			REV__ENSG00000165168|ENST00000378588|CYBB	REV__ENSG00000165168|ENST00000378588|CYBB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7482604980469	3	454.206709	1359.5983	0.23029	0.0001046	-0.47281	-0.00021475	-0.24252	-0.00011015	454.2064764154684	19.964	0.66462	19.848	19.461	20.126	-0.11592					55	22	3	0	0	0	0.33346	1	2379	2379		0.50596	0.051438	1	52988	+		42104	17212	24254	24255	51479	51479					-0.06711835635542229
SEEDDTEGF	9	Unmodified	_SEEDDTEGF_					0	0	0		ENST00000483767.5_1_1:880076-882054:-|nuORF;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENSG00000188976|ENST00000327044|NOC2L	ENST00000483767.5_1_1:880076-882054:-|nuORF	ENST00000483767.5_1_1:880076-882054:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.68798828125	2	514.688184	1027.36181	0.29255	0.00015057	-0.45483	-0.0002341	-0.16228	-8.3522E-05	514.6878669741425	73.187	0.59008	73.187	72.961	73.551	0					64	20	5	0	0	0	0.27532	1	18694	18694		12.532	0.89125	1	507410			42105	7788	24255	24256	51480	51480					-0.15077187199881337
SEEPPLEASLE	11	Unmodified	_SEEPPLEASLE_					0	0	0			REV__nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	REV__nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.7855224609375	2	600.785158	1199.55576	0.49631	0.00029817	0.3141	0.00018871	0.81041	0.00048688	600.7854773413941	62.885	1.0725	62.885	62.341	63.413	0					47	25	3	0	0	0	0.16442	1	15534	15534		34.402	1.616	1	638570	+		42106	16845	24256	24257	51481	51481					-0.03603230763792453
SEEPPLEASLE	11	Unmodified	_SEEPPLEASLE_					0	0	0			REV__nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	REV__nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.7855224609375	2	600.785158	1199.55576	0.57203	0.00034367	0.27699	0.00016641	0.84902	0.00051008	600.7854604170343	62.728	0.68056	62.824	62.602	63.282	0.095722					52	22	3	0	0	0	0.089437	2	15480	15480;15527		41.84	7.4379	1	746270	+		42107	16845	24256	24257	51482;51483	51482					-0.03603230763792453
SEEPPLEASLE	11	Unmodified	_SEEPPLEASLE_					0	0	0			REV__nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	REV__nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.7855834960938	2	600.785158	1199.55576	0.3306	0.00019862	0.74532	0.00044778	1.0759	0.0006464	600.7856504865588	62.881	0.81114	62.873	62.597	63.408	-0.0085564					59	29	3	0	0	0	0.089437	1	15518	15518		41.84	1.8899	1	622780	+		42108	16845	24256	24257	51484	51484					-0.03603230763792453
SEERELEKPV	10	Unmodified	_SEERELEKPV_					0	0	0			REV__ENSG00000198841|ENST00000371614|KTI12	REV__ENSG00000198841|ENST00000371614|KTI12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2192077636719	3	405.878704	1214.61428	-0.31303	-0.00012705	-0.74575	-0.00030268	-1.0588	-0.00042974	406.21273188182204	27.459	0.24023	27.447	27.374	27.614	-0.011562					10	7	2	0	0	0	0.31364	1	4698	4698		15.739	0	1	42647	+		42109	18874	24257	24258	51485	51485					0.015558706013280243
SEETSWPAF	9	Unmodified	_SEETSWPAF_					0	0	0		ENST00000480743.1_1_1:178855116-178863183:+|nuORF;nc|ENSG00000116191|Q86X27-3|RALGPS2;ENSG00000116191|ENST00000367635|RALGPS2	ENST00000480743.1_1_1:178855116-178863183:+|nuORF	ENST00000480743.1_1_1:178855116-178863183:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7905883789062	2	527.229822	1052.44509	0.66431	0.00035025	-0.28942	-0.00015259	0.37489	0.00019765	527.2295216129771	36.703	0.33963	36.703	36.536	36.875	0					19	11	2	0	0	0	0.24739	1	7458	7458		13.508	0.97634	1	121450			42110	2711	24258	24259	51486	51486					-0.07903405961383214
SEEWRRRVQ	9	Unmodified	_SEEWRRRVQ_					0	0	0		ENST00000373622.9_1_20:35807565-35812612:+|nuORF	ENST00000373622.9_1_20:35807565-35812612:+|nuORF	ENST00000373622.9_1_20:35807565-35812612:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.8946228027344	3	415.886415	1244.63742	-0.033802	-1.4058E-05	2.7286	0.0011348	2.6948	0.0011207	415.887683229851	14.649	0.25554	14.544	14.396	14.651	-0.10466					9	8	2	0	0	0	0.30824	1	798	798		7.609	2.0857	1	9442.8			42111	9873	24259	24260	51487	51487					0.024883542293082428
SEFAVFEQF	9	Unmodified	_SEFAVFEQF_					0	0	0			REV__ENSG00000004864|ENST00000265631|SLC25A13	REV__ENSG00000004864|ENST00000265631|SLC25A13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2553100585938	2	552.25584	1102.49713	0.59036	0.00032603	-0.36108	-0.00019941	0.22928	0.00012662	552.2554115734266	64.035	0.51907	64.035	63.797	64.316	0					41	18	3	0	0	0	0.15219	1	15926	15926		30.637	1.555	1	344710	+		42112	13337	24260	24261	51488	51488					-0.050022425476072385
SEFAVFEQF	9	Unmodified	_SEFAVFEQF_					0	0	0			REV__ENSG00000004864|ENST00000265631|SLC25A13	REV__ENSG00000004864|ENST00000265631|SLC25A13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.25537109375	2	552.25584	1102.49713	0.54033	0.0002984	-0.56726	-0.00031327	-0.026925	-1.4869E-05	552.2554480373996	63.934	0.62569	64.027	63.765	64.391	0.09288					41	22	3	0	0	0	0.15219	1	15854	15854		30.637	1.555	1	440580	+		42113	13337	24260	24261	51489	51489					-0.050022425476072385
SEFAVFEQF	9	Unmodified	_SEFAVFEQF_					0	0	0			REV__ENSG00000004864|ENST00000265631|SLC25A13	REV__ENSG00000004864|ENST00000265631|SLC25A13	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	552.25584	1102.49713	0.59036	0.00032603	-0.36108	-0.00019941	0.22928	0.00012662	552.2554115734266	64.035	0.51907	64.035	63.797	64.316	0	0.0010183	0.00015791	NaN	30.637	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344710	+		42114	13337	24260	24261							-0.050022425476072385
SEFLKKSTF	9	Unmodified	_SEFLKKSTF_					0	0	0		ENSG00000006116|ENST00000005284|CACNG3	ENSG00000006116|ENST00000005284|CACNG3	ENSG00000006116|ENST00000005284|CACNG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7830810546875	2	543.795132	1085.57571	0.6096	0.0003315	-0.32292	-0.0001756	0.28668	0.00015589	543.7949868985114	45.044	0.63124	45.044	44.71	45.341	0					32	22	2	0	0	0	0.23775	1	9970	9970		18.135	2.2878	1	351120			42115	353	24261	24262	51490	51490					0.036346097574551095
SEFLVDKTR	9	Unmodified	_SEFLVDKTR_					0	0	0			REV__ENST00000588376.5_1_19:418930-422520:-|nuORF	REV__ENST00000588376.5_1_19:418930-422520:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.2695922851562	2	547.795663	1093.57677	0.55178	0.00030226	-0.75523	-0.00041371	-0.20345	-0.00011145	547.7975415399906	75.234	1.0195	75.286	74.971	75.991	0.052368					63	37	3	0	0	0	0.23784	1	19453	19453		13.906	3.0821	1	111420	+		42116	15433	24262	24263	51491	51491					0.03372824126358864
SEGFMKVLK	9	Unmodified	_SEGFMKVLK_					0	0	0		nc|ENSG00000134313|Q9ULH0-3|KIDINS220;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	nc|ENSG00000134313|Q9ULH0-3|KIDINS220	nc|ENSG00000134313|Q9ULH0-3|KIDINS220	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7864379882812	2	519.786253	1037.55795	0.47068	0.00024465	-0.13328	-6.9279E-05	0.33739	0.00017537	519.7862051900134	51.024	0.77315	51.071	50.822	51.595	0.046577					51	28	2	0	0	0	0.082808	1	11882	11882		49.933	0	1	1473300			42117	3772	24263	24264	51492	51492					0.040675712309621304
SEGFMKVLK	9	Unmodified	_SEGFMKVLK_					0	0	0		nc|ENSG00000134313|Q9ULH0-3|KIDINS220;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	nc|ENSG00000134313|Q9ULH0-3|KIDINS220	nc|ENSG00000134313|Q9ULH0-3|KIDINS220	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7865600585938	2	519.786253	1037.55795	0.51393	0.00026713	-0.025868	-1.3446E-05	0.48806	0.00025369	519.7862672752613	51.15	0.94242	51.16	50.861	51.803	0.0095634					58	35	2	0	0	0	0.082808	1	11927	11927		58.679	0	1	1470500			42118	3772	24263	24264	51493	51493					0.040675712309621304
SEGTYNKTN	9	Unmodified	_SEGTYNKTN_					0	0	0			REV__nc|ENSG00000159873|Q8IWD4-4|CCDC117	REV__nc|ENSG00000159873|Q8IWD4-4|CCDC117	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7586669921875	2	507.230353	1012.44615	0.53508	0.00027141	2.5171	0.0012768	3.0522	0.0015482	507.73349012624493	29.311	0.26824	29.311	29.117	29.385	0					11	9	2	0	0	0	0.25706	1	5243	5243		6.7232	2.3939	1	53852	+		42119	16869	24264	24265	51494	51494					-0.059571915924834684
SEGTYNKTN	9	Unmodified	_SEGTYNKTN_					0	0	0			REV__nc|ENSG00000159873|Q8IWD4-4|CCDC117	REV__nc|ENSG00000159873|Q8IWD4-4|CCDC117	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7584533691406	2	507.230353	1012.44615	0.13611	6.9038E-05	2.1577	0.0010945	2.2938	0.0011635	507.2312349382483	29.259	0.16713	29.273	29.192	29.359	0.013474					6	5	2	0	0	0	0.26031	1	5192	5192		1.4819	0.68827	1	42296	+		42120	16869	24264	24265	51495	51495					-0.059571915924834684
SEIGGKIFEK	10	Unmodified	_SEIGGKIFEK_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.837646484375	2	554.305864	1106.59717	0.18729	0.00010382	-0.38988	-0.00021611	-0.20259	-0.0001123	554.3052554809658	40.947	0.51792	40.947	40.634	41.152	0					28	18	2	0	0	0	0.26647	1	8799	8799		34.222	10.201	1	167280			42121	1403	24265	24266	51496	51496					0.048139947861727705
SEIGGKIFEK	10	Unmodified	_SEIGGKIFEK_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	554.305864	1106.59717	0.48609	0.00026944	-0.75801	-0.00042017	-0.27192	-0.00015073	554.3052493842908	40.68	0.34759	40.773	40.557	40.905	0.09267	-0.032996	6.1025E-05	NaN	28.234	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226610			42122	1403	24265	24266							0.048139947861727705
SEIGGKIFEK	10	Unmodified	_SEIGGKIFEK_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	554.305864	1106.59717	0.28922	0.00016032	-1.0946	-0.00060674	-0.80536	-0.00044642	554.3050369830784	40.598	0.35437	40.698	40.505	40.86	0.099407	-0.10827	-0.00031211	NaN	28.234	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251440			42123	1403	24265	24266							0.048139947861727705
SEISNTEK	8	Unmodified	_SEISNTEK_					0	0	0		L1MA9_dup7974|chr8:78957327-78958463:+|1.1853824479748034|0.4592876219400165|1.37|540.0|30|2|sense	L1MA9_dup7974|chr8:78957327-78958463:+|1.1853824479748034|0.4592876219400165|1.37|540.0|30|2|sense	L1MA9_dup7974|chr8:78957327-78958463:+|1.1853824479748034|0.4592876219400165|1.37|540.0|30|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2063293457031	2	454.221997	906.429441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.905	1	19.905	19.405	20.405	0								0	0	0	0.37664	1	2375	2375		2.5775	0	1				42124	12445	24266	24267	51497	51497					-0.027516924784322327
SEISRLVTMIY	11	Unmodified	_SEISRLVTMIY_					0	0	0		ENST00000546455.5_1_12:47610250-47610424:+|nuORF	ENST00000546455.5_1_12:47610250-47610424:+|nuORF	ENST00000546455.5_1_12:47610250-47610424:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.8906555175781	3	437.904084	1310.69042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.051	1	14.987	14.487	15.487	-0.064413								0	0	0	0.38124	1	909	909		1.2148	0.4383	1				42125	11759	24267	24268	51498	51498					0.047505511771305464
SEIVMDFKHPD	11	Unmodified	_SEIVMDFKHPD_					0	0	0		ENSG00000137760|ENST00000428149|ALKBH8;nc|ENSG00000137760|Q96BT7-4|ALKBH8	ENSG00000137760|ENST00000428149|ALKBH8	ENSG00000137760|ENST00000428149|ALKBH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2340393066406	3	439.876306	1316.60709	-0.11037	-4.8548E-05	0.54126	0.00023809	0.4309	0.00018954	439.87620148022546	17.69	0.54104	17.573	17.355	17.896	-0.11739					27	18	2	0	0	0	0.33303	1	1697	1697		2.4348	0	1	28994			42126	4072	24268	24269	51499	51499					-0.03855185270731454
SEKIPDTPF	9	Unmodified	_SEKIPDTPF_					0	0	0			REV__ENST00000493235.5_1_3:132036276-132056343:+|nuORF	REV__ENST00000493235.5_1_3:132036276-132056343:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7808227539062	2	517.263665	1032.51278	0.47564	0.00024603	-1.6563	-0.00085674	-1.1807	-0.00061071	517.7632282682177	84.268	0.29427	84.251	84.03	84.324	-0.016823					16	12	2	0	0	0	0.24581	1	22015	22015		16.942	1.0951	1	198840	+		42127	13449	24269	24270	51500	51500					-0.0021795603058762936
SEKNLPGH	8	Unmodified	_SEKNLPGH_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.5736083984375	2	441.227417	880.44028	-0.13937	-6.1494E-05	0.88893	0.00039222	0.74956	0.00033073	441.22780830920385	14.905	0.33935	14.84	14.674	15.013	-0.064414					15	11	2	0	0	0	0.34434	1	815	815		0.79363	0	1	32145			42128	1150	24270	24271	51501	51501					-0.004722453134718307
SEKWVACAN	9	Unmodified	_SEKWVACAN_					0	0	0			REV__ENSG00000181544|ENST00000650831|FANCB	REV__ENSG00000181544|ENST00000650831|FANCB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.7625732421875	2	504.234384	1006.45422	0.13984	7.0514E-05	0.51117	0.00025775	0.65102	0.00032827	504.23440321784744	15.965	0.61296	15.965	15.654	16.267	0					31	21	2	0	0	0	0.26031	1	1243	1243		3.5965	0.70727	1	51407	+		42129	18152	24271	24272	51502	51502					-0.04875335876704412
SELFGPRAAF	10	Unmodified	_SELFGPRAAF_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000515773.5_1_6:43164260-43192180:+|nuORF	ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000112659|Q8IWT3-3|CUL9	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7859497070312	2	547.785099	1093.55564	0.69539	0.00038092	0.42095	0.00023059	1.1163	0.00061151	547.7853328683672	51.025	0.79813	51.025	50.738	51.536	0					54	29	3	0	0	0	0.14021	1	11914	11914		39.95	14.55	1	813900			42130	619;2449	24272	24273	51503	51503					0.012608588174998658
SELFGPRAAF	10	Unmodified	_SELFGPRAAF_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000515773.5_1_6:43164260-43192180:+|nuORF	ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000112659|Q8IWT3-3|CUL9	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7857666015625	2	547.785099	1093.55564	0.68847	0.00037713	0.56088	0.00030724	1.2494	0.00068438	547.7853151662636	51.147	0.6189	51.156	50.887	51.506	0.0095634					53	23	3	0	0	0	0.1715	1	11910	11910		36.127	9.2434	1	1138600			42131	619;2449	24272	24273	51504	51504					0.012608588174998658
SELHKLTHL	9	Unmodified	_SELHKLTHL_					0	0	0		ENST00000396573.6_1_16:9856161-9856311:-|nuORF	ENST00000396573.6_1_16:9856161-9856311:-|nuORF	ENST00000396573.6_1_16:9856161-9856311:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8370361328125	2	539.306198	1076.59784	0.078835	4.2516E-05	3.1254	0.0016856	3.2043	0.0017281	539.3077795774607	14.005	0.3361	13.9	13.713	14.049	-0.10466					12	11	2	0	0	0	0.26145	1	601	601		2.0598	0	1	18725			42132	10119	24273	24274	51505	51505					0.06260834225895451
SELSVAQKP	9	Unmodified	_SELSVAQKP_					0	0	0		nc|ENSG00000100722|Q6PJT7-10|ZC3H14;nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14;ENST00000554020.5_1_14:89068416-89075752:+|nuORF;nc|ENSG00000100722|Q6PJT7-8|ZC3H14;nc|ENSG00000100722|Q6PJT7-6|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14;nc|ENSG00000100722|Q6PJT7-8|ZC3H14	nc|ENSG00000100722|Q6PJT7-10|ZC3H14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7874755859375	2	479.763832	957.513111	-0.18156	-8.7104E-05	1.4323	0.00068717	1.2507	0.00060006	479.76525152332226	38.713	0.1424	38.713	38.623	38.765	0					5	4	2	0	0	0	0.25202	1	8109	8109		10.824	2.2306	1	55726			42133	12618;12619	24274	24275	51506	51506					0.032654636892857525
SEMAVAHAL	9	Unmodified	_SEMAVAHAL_					0	0	0		nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3	nc|ENSG00000163468|P49368-2|CCT3	nc|ENSG00000163468|P49368-2|CCT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.2723083496094	2	464.731477	927.448402	-0.36861	-0.0001713	-0.50177	-0.00023319	-0.87038	-0.00040449	464.7319089581868	13.79	0.27001	13.685	13.603	13.873	-0.10466					14	9	3	0	0	0	0.25291	1	546	546		9.3474	0	1	36008			42134	5683	24275	24276	51507	51507					-0.0182243438837304
SENKSLLHSF	10	Unmodified	_SENKSLLHSF_					0	0	0			REV__nc|ENSG00000051825|Q99550-2|MPHOSPH9	REV__nc|ENSG00000051825|Q99550-2|MPHOSPH9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7659912109375	2	581.29857	1160.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.957	1	84.034	83.534	84.534	0.077095								0	0	0	0.35421	1	21980	21980		13.042	0.51092	1		+		42135	13569	24276	24277	51508	51508					0.00871922638043543
SEPQKERNCK	10	Unmodified	_SEPQKERNCK_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.7851867675781	3	406.868033	1217.58227	-0.068622	-2.792E-05	3.0723	0.00125	3.0037	0.0012221	407.20412810823836	24.103	0.15037	24.03	23.935	24.085	-0.072559					6	4	2	0	0	0	0.32095	1	3627	3627		1.4551	0.49284	1	42768			42136	7291	24277	24278	51509	51509					-0.01781820353448893
SEQIHGRLL	9	Unmodified	_SEQIHGRLL_					0	0	0			REV__ENSG00000007376|ENST00000007264|RPUSD1	REV__ENSG00000007376|ENST00000007264|RPUSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3062744140625	2	526.795998	1051.57744	0.51512	0.00027136	-1.303	-0.0006864	-0.78784	-0.00041503	526.7953429237583	21.568	0.23041	21.519	21.344	21.574	-0.049376					9	7	2	0	0	0	0.25706	1	2850	2850		6.7232	1.4925	1	25151	+		42137	13386	24278	24279	51510	51510					0.05371663566120333
SEQLKEKLK	9	Unmodified	_SEQLKEKLK_					0	0	0			REV__ENSG00000044459|ENST00000380647|CNTLN	REV__ENSG00000044459|ENST00000380647|CNTLN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.3351440429688	2	551.826963	1101.63937	0.023273	1.2843E-05	-0.34091	-0.00018813	-0.31764	-0.00017528	551.8266008619378	12.872	0.21955	12.872	12.783	13.003	0					13	7	2	0	0	0	0.25988	1	247	247		3.9444	0	1	48685	+		42138	13536	24279	24280	51511	51511					0.09261970194552305
SEQLPLSK	8	Unmodified	_SEQLPLSK_					0	0	0			REV__ENST00000491763.1_1_3:156544517-156544577:+|nuORF	REV__ENST00000491763.1_1_3:156544517-156544577:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7609558105469	2	451.2531	900.491647	0.069366	3.1301E-05	-0.22548	-0.00010175	-0.15612	-7.0448E-05	451.2529404972201	23.655	0.76668	23.582	23.257	24.024	-0.072559					62	26	3	0	0	0	0.30795	1	3435	3435		30.637	5.2372	1	318520	+		42139	21618	24280	24281	51512	51512					0.03742078660582138
SERPCRREPL	10	Unmodified	_SERPCRREPL_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.9082946777344	3	414.883906	1241.62989	-0.063191	-2.6217E-05	0.16206	6.7234E-05	0.098865	4.1017E-05	414.88393008089764	24.759	0.92955	24.759	24.367	25.296	0					65	31	3	0	0	0	0.32122	1	3809	3809		2.086	0	1	137210			42140	5124	24281	24282	51513	51513					0.018738786373887706
SERPNKVTI	9	Unmodified	_SERPNKVTI_					0	0	0		ENSG00000170006|ENST00000304385|TMEM154	ENSG00000170006|ENST00000304385|TMEM154	ENSG00000170006|ENST00000304385|TMEM154	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.77880859375	2	522.29583	1042.57711	0.35126	0.00018346	-0.64623	-0.00033753	-0.29497	-0.00015406	522.2954287349108	19.721	0.49333	19.721	19.493	19.986	0					34	17	3	0	0	0	0.30459	1	2326	2326		8.1555	1.4324	1	64375			42141	6415	24282	24283	51514	51514					0.057522438462456194
SERQDLPLH	9	Unmodified	_SERQDLPLH_					0	0	0			REV__ENST00000519241.5_1_8:58055399-58131978:+|nuORF	REV__ENST00000519241.5_1_8:58055399-58131978:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2954711914062	2	547.783087	1093.55162	0.38017	0.00020825	-4.178	-0.0022886	-3.7978	-0.0020804	547.7800017204792	59.085	0.88652	59.085	58.439	59.326	0					45	19	3	0	0	0	0.155	1	14435	14435		30.225	7.4885	1	293590	+		42142	21870	24283	24284	51515	51515					0.008587693238041538
SERSFGWTLS	10	Unmodified	_SERSFGWTLS_					0	0	0			REV__chr2:145172131-145174890|431|13.3|0.75|4.14|+|0|TEX41,TEX41|1	REV__chr2:145172131-145174890|431|13.3|0.75|4.14|+|0|TEX41,TEX41|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.2831420898438	2	585.28292	1168.55129	-0.0052687	-3.0837E-06	-0.47067	-0.00027548	-0.47594	-0.00027856	585.2831825603135	14.726	0.56756	14.621	14.368	14.935	-0.10466					60	19	5	0	0	0	0.41168	1	839	839		1.3295	0.13619	1	355470	+		42143	13187	24284	24285	51516	51516					-0.026246503960237533
SERSLISSI	9	Unmodified	_SERSLISSI_					0	0	0		nc|ENSG00000113763|Q6ZN44-3|UNC5A	nc|ENSG00000113763|Q6ZN44-3|UNC5A	nc|ENSG00000113763|Q6ZN44-3|UNC5A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.26611328125	2	496.274564	990.534574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.376	1	80.441	79.941	80.941	0.065094								0	0	0	0.19804	1	20877	20877		23.148	1.4018	1				42144	12659	24285	24286	51517	51517					0.038928487180101
SERVVSIY	8	Unmodified	_SERVVSIY_					0	0	0		ENSG00000260230|ENST00000561981|FRRS1L	ENSG00000260230|ENST00000561981|FRRS1L	ENSG00000260230|ENST00000561981|FRRS1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.2347106933594	2	476.758549	951.502546	-0.034067	-1.6242E-05	-0.50508	-0.0002408	-0.53915	-0.00025704	476.75778218256085	15.349	0.26648	15.284	15.158	15.424	-0.064413					13	8	2	0	0	0	0.34353	1	964	964		4.756	2.1785	1	46182			42145	8651	24286	24287	51518	51518					0.0248548103485291
SESHSSCDM	9	Unmodified	_SESHSSCDM_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.6661071777344	2	491.665674	981.316795	0.2638	0.0001297	-0.022055	-1.0844E-05	0.24174	0.00011886	491.6660702109605	26.724	1.3721	26.724	26.189	27.561	0					85	47	3	0	0	0	0.34681	1	4520	4520		1.8442	0	1	227230	+		42146	17431	24287	24288	51519	51519					-0.1746103253841511
SESHSSCDM	9	Unmodified	_SESHSSCDM_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.26690673828125	2	491.665674	981.316795	0.27617	0.00013578	0.01989	9.7794E-06	0.29606	0.00014556	491.66606143552497	26.775	1.7267	26.753	25.888	27.615	-0.021412					101	60	3	0	0	0	0.25938	1	4445	4445		4.3292	2.0265	1	247150	+		42147	17431	24287	24288	51520	51520					-0.1746103253841511
SETPEIRKY	9	Unmodified	_SETPEIRKY_					0	0	0		nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;ENST00000574871.1_1_17:4798302-4798913:+|nuORF	nc|ENSG00000141503|Q8N4C8-5|MINK1	nc|ENSG00000141503|Q8N4C8-5|MINK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7948608398438	2	561.793121	1121.57169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.32	1	115.34	114.84	115.84	0.018738								0	0	0	0.26334	1	29960	29960		2.0598	0	1				42148	4386	24288	24289	51521	51521					0.015765202637794573
SETPTIQKGF	10	Unmodified	_SETPTIQKGF_					0	0	0		nc|ENSG00000102524|Q9Y275-3|TNFSF13B	nc|ENSG00000102524|Q9Y275-3|TNFSF13B	nc|ENSG00000102524|Q9Y275-3|TNFSF13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.8037719726562	2	554.287671	1106.56079	0.7767	0.00043052	-0.61229	-0.00033939	0.16441	9.1131E-05	554.2870732803843	50.717	1.2399	50.762	49.877	51.117	0.045479					56	45	2	0	0	0	0.29519	1	11874	11874		15.847	0	1	384090			42149	12627	24289	24290	51522	51522					0.011771178894605328
SETSPRLLK	9	Unmodified	_SETSPRLLK_					0	0	0			REV__nc|ENSG00000279968|A0A096LPI5|CCDC28A-AS1	REV__nc|ENSG00000279968|A0A096LPI5|CCDC28A-AS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2906494140625	2	515.798206	1029.58186	0.44968	0.00023195	-1.1341	-0.00058495	-0.68439	-0.00035301	515.7974989891311	30.086	0.42444	30.086	29.801	30.225	0					24	14	2	0	0	0	0.25202	1	5409	5409		3.5965	0	1	213340	+		42150	23236	24290	24291	51523	51523					0.06825127988986424
SEVAFVMQLVK	11	Unmodified	_SEVAFVMQLVK_					0	0	0		ENSG00000086015|ENST00000361297|MAST2;nc|ENSG00000086015|Q6P0Q8-2|MAST2	ENSG00000086015|ENST00000361297|MAST2	ENSG00000086015|ENST00000361297|MAST2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.258056640625	3	417.565291	1249.67404	-0.10671	-4.4557E-05	-0.057264	-2.3912E-05	-0.16397	-6.8469E-05	417.5652304685814	26.863	0.25196	26.863	26.701	26.953	0					13	8	2	0	0	0	0.32951	1	4503	4503		4.4062	0.28952	1	26089			42151	1273	24291	24292	51524	51524					0.05919470010985606
SEVYLFSHVKG	11	Unmodified	_SEVYLFSHVKG_					0	0	0		SCAPER|p.A872Pfs*4|1|0.42|ENSG00000140386|chr15:76665685-76665685|T/-|frameshift_variant;ENST00000303521.10_1_15:76673691-77134263:-|nuORF;ENSG00000140386|ENST00000563290|SCAPER;nc|ENSG00000140386|Q9BY12-3|SCAPER	SCAPER|p.A872Pfs*4|1|0.42|ENSG00000140386|chr15:76665685-76665685|T/-|frameshift_variant	SCAPER|p.A872Pfs*4|1|0.42|ENSG00000140386|chr15:76665685-76665685|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3297119140625	2	633.32987	1264.64519	0.37498	0.00023749	-0.23469	-0.00014864	0.14029	8.8849E-05	633.3296751036592	71.302	0.25496	71.363	71.179	71.434	0.060783					14	8	2	0	0	0	0.36257	1	18125	18125		16.149	0.90062	1	221070			42152	4298	24292	24293	51525	51525					0.02345068706222264
SEWDILLK	8	Unmodified	_SEWDILLK_					0	0	0		ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7618713378906	2	502.276575	1002.5386	0.29328	0.00014731	-2.9824	-0.001498	-2.6892	-0.0013507	502.2745296446394	17.544	1.2911	17.544	16.925	18.216	0					110	44	5	0	0	0	0.39956	1	1775	1775		19.439	0.18201	1	994190			42153	3111	24293	24294	51526	51526					0.037429382117238674
SEWRTKCDK	9	Unmodified	_SEWRTKCDK_					0	0	0			REV__ENSG00000189167|ENST00000533490|ZAR1L	REV__ENSG00000189167|ENST00000533490|ZAR1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8038330078125	2	576.776948	1151.53934	-0.0063815	-3.6807E-06	-2.3991	-0.0013837	-2.4054	-0.0013874	576.7753204560579	18.955	0.375	18.897	18.737	19.112	-0.058174					18	12	2	0	0	0	0.26099	1	2063	2063		2.9952	1.3426	1	36725	+		42154	18599	24294	24295	51527	51527					-0.030365904108975883
SEYKRAKLAFW	11	Unmodified	_SEYKRAKLAFW_					0	0	0		ENST00000538204.5_1_X:131511514-131511595:-|nuORF	ENST00000538204.5_1_X:131511514-131511595:-|nuORF	ENST00000538204.5_1_X:131511514-131511595:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.755859375	3	466.922467	1397.74557	-0.12414	-5.7963E-05	-1.3083	-0.00061086	-1.4324	-0.00066882	467.2568107562885	22.625	0.61082	22.537	22.272	22.883	-0.087608					45	21	3	0	0	0	0.33182	1	3232	3232		5.4027	2.5594	1	154770			42155	11698	24295	24296	51528	51528					0.0626072575987564
SEYSEKETEF	10	Unmodified	_SEYSEKETEF_					0	0	0		ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.767333984375	2	624.766965	1247.51938	0.55483	0.00034664	-0.047898	-2.9925E-05	0.50694	0.00031672	624.7670737325562	74.322	1.0801	74.322	74.098	75.178	0					95	37	4	0	0	0	0.2811	1	19064	19064		22.736	0	1	1824800			42156	4413	24296	24297	51529	51529					-0.0944810766052342
SEYSEKETEF	10	Unmodified	_SEYSEKETEF_					0	0	0		ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.7681274414062	2	624.766965	1247.51938	0.0014901	9.3099E-07	0.69567	0.00043463	0.69716	0.00043556	624.7674124659098	74.252	1.0987	74.304	74.06	75.159	0.052368					107	38	5	0	0	0	0.3258	1	18984	18984		17.113	4.0704	1	1940200			42157	4413	24296	24297	51530	51530					-0.0944810766052342
SEYSEKETEF	10	Unmodified	_SEYSEKETEF_					0	0	0		ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.7674560546875	2	624.766965	1247.51938	0.3048	0.00019043	0.94549	0.00059071	1.2503	0.00078114	624.7672875461475	74.375	1.0488	74.345	74.111	75.16	-0.030655					105	37	6	0	0	0	0.3258	2	19021	19021;19073		17.113	2.2746	1	2167600			42158	4413	24296	24297	51531;51532	51531					-0.0944810766052342
SFAERFLPL	9	Unmodified	_SFAERFLPL_					0	0	0			REV__ENSG00000120952|ENST00000240189|PRAMEF2	REV__ENSG00000120952|ENST00000240189|PRAMEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3162231445312	2	540.297842	1078.58113	0.48687	0.00026305	2.9617	0.0016002	3.4486	0.0018633	540.2995146344981	74.957	0.18581	75.01	74.865	75.051	0.052361					9	6	2	0	0	0	0.24739	1	19230	19230		8.5933	0	1	102480	+		42159	15105	24297	24298	51533	51533					0.04498333339961391
SFAFPQEV	8	Unmodified	_SFAFPQEV_					0	0	0			REV__nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	REV__nc|ENSG00000168826|Q6ZSB9-4|ZBTB49	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.76318359375	2	462.726718	923.438883	0.39834	0.00018432	0.46387	0.00021464	0.86221	0.00039897	462.72665520830924	64.203	0.83849	64.193	63.769	64.608	-0.0095291					53	30	2	0	0	0	0.32435	1	15921	15921		23.148	0	1	220580	+		42160	17482	24298	24299	51534	51534					-0.025898794022282345
SFAHNCWAGS	10	Unmodified	_SFAHNCWAGS_					0	0	0		LTR2752_dup121|chr7:135263151-135264133:-|1.6065116481286288|0.0665708146513393|4.59|523.0|37|3|anti-sense	LTR2752_dup121|chr7:135263151-135264133:-|1.6065116481286288|0.0665708146513393|4.59|523.0|37|3|anti-sense	LTR2752_dup121|chr7:135263151-135264133:-|1.6065116481286288|0.0665708146513393|4.59|523.0|37|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2222900390625	2	540.221808	1078.42906	0.59335	0.00032054	0.28161	0.00015213	0.87496	0.00047267	540.221988500804	70.441	0.72583	70.416	70.079	70.804	-0.024864					102	25	6	0	0	0	0.36015	1	17855	17855		10.8	2.8894	1	2679500			42161	12513	24299	24300	51535	51535					-0.10701390679287215
SFAKLLVW	8	Unmodified	_SFAKLLVW_					0	0	0			REV__THE1B-int_dup1888|chr6:111282961-111284170:-|1.7370166059662973|0.0871552847339515|4.32|531.0|1|1|sense	REV__THE1B-int_dup1888|chr6:111282961-111284170:-|1.7370166059662973|0.0871552847339515|4.32|531.0|1|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.2792053222656	2	482.286746	962.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.44	1	48.44	47.94	48.94	0								0	0	0	0.29147	1	11084	11084		30.225	0	1		+		42162	23323	24300	24301	51536	51536					0.07616153662195302
SFALFMVIW	9	Unmodified	_SFALFMVIW_					0	0	0		ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000118707|Q9GZN2-2|TGIF2	ENSG00000101084|ENST00000344795|RAB5IF	ENSG00000101084|ENST00000344795|RAB5IF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7404174804688	2	557.293714	1112.57287	0.41895	0.00023348	-3.4175	-0.0019045	-2.9985	-0.0016711	557.2925254178917	72.775	0.32738	72.775	72.726	73.053	0					14	11	2	0	0	0	0.24913	1	18627	18627		7.9102	0.62092	1	51207			42163	1661	24301	24302	51537	51537					0.021090630989647252
SFAPRSAVF	9	Unmodified	_SFAPRSAVF_					0	0	0		ENSG00000128709|ENST00000249499|HOXD9	ENSG00000128709|ENST00000249499|HOXD9	ENSG00000128709|ENST00000249499|HOXD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.3024597167969	2	491.261259	980.507966	0.046118	2.2656E-05	-0.48291	-0.00023723	-0.43679	-0.00021458	491.2609360462166	46.34	0.4801	46.34	46.138	46.618	0					26	17	2	0	0	0	0.23749	1	10412	10412		20.415	3.3016	1	369300			42164	3388	24302	24303	51538	51538					0.016932046173337767
SFAPRSAVF	9	Unmodified	_SFAPRSAVF_					0	0	0		ENSG00000128709|ENST00000249499|HOXD9	ENSG00000128709|ENST00000249499|HOXD9	ENSG00000128709|ENST00000249499|HOXD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.3022766113281	2	491.261259	980.507966	0.16808	8.2573E-05	-0.048705	-2.3927E-05	0.11938	5.8646E-05	491.2614253094472	46.165	0.43232	46.225	46.015	46.448	0.059837					20	15	2	0	0	0	0.17242	1	10378	10378		36.127	7.0454	1	343870			42165	3388	24302	24303	51539	51539					0.016932046173337767
SFAPRSAVF	9	Unmodified	_SFAPRSAVF_					0	0	0		ENSG00000128709|ENST00000249499|HOXD9	ENSG00000128709|ENST00000249499|HOXD9	ENSG00000128709|ENST00000249499|HOXD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.30224609375	2	491.261259	980.507966	0.27956	0.00013734	0.018151	8.9168E-06	0.29771	0.00014625	491.26137857885556	46.224	0.48431	46.289	46.043	46.527	0.065048					23	17	2	0	0	0	0.22674	1	10391	10391		22.736	10.205	1	451690			42166	3388	24302	24303	51540	51540					0.016932046173337767
SFAQKAKRQN	10	Unmodified	_SFAQKAKRQN_					0	0	0		nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2	nc|ENSG00000095383|Q9BYX2-4|TBC1D2	nc|ENSG00000095383|Q9BYX2-4|TBC1D2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8470458984375	2	589.325454	1176.63635	0.11292	6.6548E-05	-0.92621	-0.00054584	-0.81329	-0.00047929	589.3246540747249	15.519	0.42099	15.454	15.247	15.668	-0.064414					22	13	3	0	0	0	0.32033	1	1102	1102		3.5965	0.31518	1	65787			42167	1450	24303	24304	51541	51541					0.0551013986041653
SFATRIRKP	9	Unmodified	_SFATRIRKP_					0	0	0			REV__ENSG00000170370|ENST00000553456|EMX2	REV__ENSG00000170370|ENST00000553456|EMX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.768310546875	2	538.322183	1074.62981	0.19937	0.00010732	0.43367	0.00023345	0.63304	0.00034078	538.3220004905205	42.603	0.2708	42.603	42.435	42.706	0					12	9	2	0	0	0	0.25202	1	9243	9243		6.7232	2.7788	1	122120	+		42168	17576	24304	24305	51542	51542					0.09548246699705487
SFCAPDRNF	9	Unmodified	_SFCAPDRNF_					0	0	0		nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;ENST00000554315.5_1_14:73753704-73876743:-|nuORF;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB	nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-6|NUMB	nc|ENSG00000133961|P49757-4|NUMB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7321166992188	2	528.732009	1055.44946	0.5534	0.0002926	0.59499	0.00031459	1.1484	0.00060719	528.7321178457288	68.589	0.92908	68.57	68.197	69.126	-0.019157					102	32	5	0	0	0	0.28674	1	17232	17232		10.824	2.2306	1	1520900			42169	3741;12704	24305	24306	51543	51543					-0.07604220019470631
SFCNKNNTR	9	Unmodified	_SFCNKNNTR_					0	0	0		ENST00000475659.1_1_1:197237491-197326220:+|nuORF;nc|ENSG00000134376|P82279-5|CRB1;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;ENSG00000134376|ENST00000367400|CRB1	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	ENST00000475659.1_1_1:197237491-197326220:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.778076171875	2	542.25364	1082.49273	0.16961	9.1973E-05	-0.94281	-0.00051124	-0.7732	-0.00041927	542.2530871906375	14.625	0.19753	14.625	14.478	14.676	0					9	6	2	0	0	0	0.26204	1	745	745		1.4819	0.68827	1	18863			42170	3781	24306	24307	51544	51544					-0.04522030242173969
SFDADVQQSL	10	Unmodified	_SFDADVQQSL_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7967529296875	2	555.259111	1108.50367	0.35403	0.00019658	0.40071	0.0002225	0.75474	0.00041908	555.2578060092166	49.741	1.0009	49.786	49.342	50.343	0.044891					66	37	3	0	0	0	0.15532	1	11428	11428		53.404	29.383	1	315290	+		42171	23262	24307	24308	51545	51545					-0.04624349386904214
SFDARFDVSF	10	Unmodified	_SFDARFDVSF_					0	0	0			REV__nc|ENSG00000056586|Q9HBD1-6|RC3H2	REV__nc|ENSG00000056586|Q9HBD1-6|RC3H2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.7775268554688	2	595.77747	1189.54039	0.70347	0.00041911	-0.39869	-0.00023753	0.30478	0.00018158	595.7771525188164	58.607	0.47447	58.593	58.331	58.806	-0.014267					39	16	3	0	0	0	0.22295	1	14204	14204		29.841	7.1043	1	763450	+		42172	13598	24308	24309	51546	51546					-0.046800527703453554
SFDDVLLIEKI	11	Unmodified	_SFDDVLLIEKI_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.3589477539062	2	646.360836	1290.70712	0.033582	2.1706E-05	-1.6883	-0.0010912	-1.6547	-0.0010695	646.3597270042599	103.6	0.38254	103.6	103.53	103.91	0					131	55	3	0	0	0	0.44523	2	27521	27521;27565		5.2969	0	1	5730300	+		42173	15815	24309	24310	51547;51548	51547					0.07339375334731812
SFDDVLLIEKI	11	Unmodified	_SFDDVLLIEKI_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.361328125	2	646.360836	1290.70712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.1	1	103.1	102.6	103.6	0								0	0	0	0.36335	1	27402	27402		5.2969	0	1		+		42174	15815	24309	24310	51549	51549					0.07339375334731812
SFDDVLLIEKI	11	Unmodified	_SFDDVLLIEKI_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.3609008789062	2	646.360836	1290.70712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.29	1	103.29	102.79	103.79	0								0	0	0	0.36335	1	27450	27450		5.2969	0	1		+		42175	15815	24309	24310	51550	51550					0.07339375334731812
SFDDVLLIEKI	11	Unmodified	_SFDDVLLIEKI_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.3616333007812	2	646.360836	1290.70712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.44	1	103.44	102.94	103.94	0								0	0	0	0.36335	1	27485	27485		5.2969	0	1		+		42176	15815	24309	24310	51551	51551					0.07339375334731812
SFDDVLLIEKI	11	Unmodified	_SFDDVLLIEKI_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.3587036132812	2	646.360836	1290.70712	0.17285	0.00011172	-2.4683	-0.0015954	-2.2955	-0.0014837	647.3618966779642	103.08	0.29935	103.09	102.89	103.19	0.0082703					121	41	4	0	0	0	0.44523	2	27398	27398;27419		5.2969	0	1	9644300	+		42177	15815	24309	24310	51552;51553	51552					0.07339375334731812
SFDDVLLIEKI	11	Unmodified	_SFDDVLLIEKI_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	646.3597412109375	2	646.360836	1290.70712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.08	1	103.08	102.58	103.58	-0.0011139								0	0	0	0.36335	1	27433	27433		5.2969	0	1		+		42178	15815	24309	24310	51554	51554					0.07339375334731812
SFDFCLQKSQ	10	Unmodified	_SFDFCLQKSQ_					0	0	0			REV__ENST00000544798.2_1_12:124408671-124428876:-|nuORF	REV__ENST00000544798.2_1_12:124408671-124428876:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.7789306640625	2	601.779156	1201.54376	0.59421	0.00035758	-2.2094	-0.0013296	-1.6152	-0.00097199	601.7783660941997	56.671	0.53873	56.671	56.423	56.962	0					37	19	3	0	0	0	0.30872	1	13641	13641		19.362	0.10495	1	382820	+		42179	22160	24310	24311	51555	51555					-0.048951259879686404
SFDGFRADYL	10	Unmodified	_SFDGFRADYL_					0	0	0		ENPP4|p.N327Kfs*2|1|0.79|ENSG00000001561|chr6:46141202-46141203|-/A|frameshift_variant;ENSG00000001561|ENST00000321037|ENPP4	ENPP4|p.N327Kfs*2|1|0.79|ENSG00000001561|chr6:46141202-46141203|-/A|frameshift_variant	ENPP4|p.N327Kfs*2|1|0.79|ENSG00000001561|chr6:46141202-46141203|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.7628784179688	2	595.77747	1189.54039	0.5942	0.00035401	0.0085912	5.1184E-06	0.60279	0.00035913	595.7773583299563	58.546	0.46967	58.546	58.243	58.712	0					33	15	3	0	0	0	0.21126	1	14206	14206		31.268	3.6395	1	408130			42180	284	24311	24312	51556	51556					-0.046800527703453554
SFDKAKLK	8	Unmodified	_SFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.7789611816406	2	468.779285	935.544017	-0.023316	-1.093E-05	0.20186	9.4628E-05	0.17854	8.3697E-05	468.77932591915715	16.774	1.0772	16.774	16.491	17.568	0					100	37	4	0	0	0	0.024205	2	1387	1387;1436		96.367	40.19	1	3025000		+	42181	567	24312	24313	51557;51558	51557					0.07366661794173979
SFDKAKLK	8	Unmodified	_SFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.77923583984375	2	468.779285	935.544017	-0.10162	-4.7639E-05	0.21099	9.8909E-05	0.10937	5.127E-05	468.77934073012733	16.876	1.1939	16.762	16.503	17.697	-0.11434					114	42	4	0	0	0	0.024205	3	1462	1417;1462;1506		96.367	23.759	1	3016400		+	42182	567	24312	24313	51559;51560;51561	51560					0.07366661794173979
SFDKAKLK	8	Unmodified	_SFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7793273925781	2	468.779285	935.544017	0.2428	0.00011382	-0.076193	-3.5718E-05	0.1666	7.81E-05	468.7792166933167	16.806	1.4561	16.744	16.414	17.87	-0.062534					128	51	4	0	0	0	0.016352	3	1446	1400;1446;1495		106.94	33.794	1	3093900		+	42183	567	24312	24313	51562;51563;51564	51563					0.07366661794173979
SFDKSCDEV	9	Unmodified	_SFDKSCDEV_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2848510742188	2	515.213314	1028.41208	0.79829	0.00041129	-1.2245	-0.00063085	-0.42617	-0.00021957	515.7128339411404	56.318	0.10283	56.318	56.267	56.37	0					5	3	2	0	0	0	0.2451	1	13528	13528		6.7232	1.4925	1	165650	+		42184	15644	24313	24314	51565	51565					-0.10099356075738797
SFDRSNSLM	9	Unmodified	_SFDRSNSLM_					0	0	0			REV__ENST00000464455.1_1_X:18942433-18943881:-|nuORF	REV__ENST00000464455.1_1_X:18942433-18943881:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.283447265625	2	528.742573	1055.47059	0.31769	0.00016798	-0.25802	-0.00013643	0.059665	3.1547E-05	528.742247005451	15.949	0.61613	15.949	15.706	16.322	0					45	21	3	0	0	0	0.25323	1	1273	1273		10.074	2.1638	1	94597	+		42185	21263	24314	24315	51566	51566					-0.05492254710588895
SFDVLSVALF	10	Unmodified	_SFDVLSVALF_					0	0	0		ENST00000545653.5_1_5:39373349-39375117:-|nuORF	ENST00000545653.5_1_5:39373349-39375117:-|nuORF	ENST00000545653.5_1_5:39373349-39375117:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3151245117188	2	549.297507	1096.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.072	1	64.072	63.572	64.572	0								0	0	0	0.33945	1	15906	15906		19.257	3.4098	1				42186	11754	24315	24316	51567	51567					0.03603493900232024
SFEAHVREKFN	11	Unmodified	_SFEAHVREKFN_					0	0	0		nc|ENSG00000138311|Q70YC5-2|ZNF365;ENSG00000138311|ENST00000395254|ZNF365;nc|ENSG00000138311|Q70YC5-4|ZNF365;nc|ENSG00000138311|Q70YC5-3|ZNF365	nc|ENSG00000138311|Q70YC5-2|ZNF365	nc|ENSG00000138311|Q70YC5-2|ZNF365	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2528381347656	3	455.229959	1362.66805	0.030832	1.4035E-05	-2.4218	-0.0011025	-2.3909	-0.0010884	455.2287501146181	27.155	0.27625	27.134	27.015	27.291	-0.021412					12	9	2	0	0	0	0.33326	1	4620	4620		1.4551	0.12547	1	38839			42187	4136	24316	24317	51568	51568					0.0012208782370635163
SFEEQHISF	9	Unmodified	_SFEEQHISF_					0	0	0		nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000162825|ENST00000698833|NBPF20;ENST00000491285.1_1:146215077-146250826:-|nuORF;ENSG00000270629|ENST00000619423|NBPF14;nc|ENSG00000162825|P0DPF2|NBPF20;ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1	nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000219481|ENST00000430580|NBPF1	nc|ENSG00000269713|P0DPF3-2|NBPF9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8213500976562	2	562.256371	1122.49819	0.46072	0.00025904	1.7817	0.0010018	2.2424	0.0012608	562.2573643110389	68.978	0.43539	69.05	68.854	69.29	0.071938					27	15	2	0	0	0	0.23783	1	17424	17424		4.3292	1.0479	1	112900			42188	8690;8417	24317	24318	51569	51569					-0.058160281787195345
SFEEQHISF	9	Unmodified	_SFEEQHISF_					0	0	0		nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000162825|ENST00000698833|NBPF20;ENST00000491285.1_1:146215077-146250826:-|nuORF;ENSG00000270629|ENST00000619423|NBPF14;nc|ENSG00000162825|P0DPF2|NBPF20;ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1	nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000219481|ENST00000430580|NBPF1	nc|ENSG00000269713|P0DPF3-2|NBPF9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8213500976562	2	562.256371	1122.49819	0.25302	0.00014226	1.7929	0.0010081	2.0459	0.0011503	562.2572443414813	68.994	0.53101	68.975	68.739	69.27	-0.01915					29	18	2	0	0	0	0.23783	1	17445	17445		7.9102	0	1	97827			42189	8690;8417	24317	24318	51570	51570					-0.058160281787195345
SFEFFIAML	9	Unmodified	_SFEFFIAML_					0	0	0		Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|198|3|anti-sense	Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|198|3|anti-sense	Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|198|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7749633789062	2	552.775354	1103.53615	-0.073514	-4.0637E-05	-0.97277	-0.00053772	-1.0463	-0.00057836	552.7750513846111	13.154	0.3108	13.087	12.965	13.275	-0.067496					25	10	4	0	0	0	0.33018	1	341	341		4.3292	1.334	1	123750			42190	12378	24318	24319	51571	51571					-0.011472335175994886
SFELLQLSY	9	Unmodified	_SFELLQLSY_					0	0	0		nc|ENSG00000214367|Q68CZ6-2|HAUS3;ENSG00000214367|ENST00000443786|HAUS3	nc|ENSG00000214367|Q68CZ6-2|HAUS3	nc|ENSG00000214367|Q68CZ6-2|HAUS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2693481445312	2	550.28714	1098.55973	0.48211	0.0002653	0.32362	0.00017808	0.80573	0.00044338	550.2876509122199	38.542	0.92101	38.633	38.183	39.104	0.090881					114	33	6	0	0	0	0.25314	1	8149	8149		15.847	1.0089	1	3214500			42191	8383	24319	24320	51572	51572					0.014389035205795153
SFELLQLSY	9	Unmodified	_SFELLQLSY_					0	0	0		nc|ENSG00000214367|Q68CZ6-2|HAUS3;ENSG00000214367|ENST00000443786|HAUS3	nc|ENSG00000214367|Q68CZ6-2|HAUS3	nc|ENSG00000214367|Q68CZ6-2|HAUS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2695922851562	2	550.28714	1098.55973	0.51249	0.00028202	0.419	0.00023057	0.93149	0.00051259	550.2876074371104	38.531	0.89603	38.628	38.202	39.098	0.097527					122	31	6	0	0	0	0.22188	1	8152	8152		20.454	0	1	2749000			42192	8383	24319	24320	51573	51573					0.014389035205795153
SFFDHCPDVT	10	Unmodified	_SFFDHCPDVT_					0	0	0			REV__ENST00000526194.5_1_1:21560049-21616919:-|nuORF	REV__ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.356689453125	2	584.242406	1166.47026	0.53585	0.00031307	0.61667	0.00036029	1.1525	0.00067335	584.2427210846645	83.484	0.35191	83.467	83.211	83.563	-0.016823					22	13	2	0	0	0	0.32033	1	21846	21846		0	0	1	129050	+		42193	14962	24320	24321	51574	51574					-0.10631674430464955
SFFFMCCSS	9	Unmodified	_SFFFMCCSS_					0	0	0			REV__ENST00000497194.6_1_11:71713256-71713580:+|nuORF	REV__ENST00000497194.6_1_11:71713256-71713580:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.295654296875	2	529.692649	1057.37075	0.40261	0.00021326	1.1839	0.00062713	1.5866	0.00084039	529.6932403813415	59.086	0.39332	59.178	59.015	59.408	0.091301					20	13	2	0	0	0	0.25938	1	14373	14373		1.8442	0	1	175720	+		42194	21681	24321	24322	51575	51575					-0.15564531640416135
SFFHFCLVL	9	Unmodified	_SFFHFCLVL_					0	0	0		ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.30517578125	2	556.783513	1111.55247	0.36832	0.00020507	1.6443	0.00091554	2.0127	0.0011206	556.7844292314588	43.024	1.5089	43.109	42.153	43.662	0.085197					129	54	4	0	0	0	0.20344	1	9468	9468		23.148	0.41214	1	1949900			42195	6281	24322	24323	51576	51576					0.0011589243915750558
SFFHFSSFH	9	Unmodified	_SFFHFSSFH_					0	0	0			REV__ENST00000472054.2_1_6:142738255-142764649:+|nuORF	REV__ENST00000472054.2_1_6:142738255-142764649:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.8267822265625	2	571.756341	1141.49813	0.24814	0.00014188	0.35707	0.00020416	0.60521	0.00034603	571.7566446221595	31.787	0.96444	31.787	31.476	32.44	0					59	34	2	0	0	0	0.24581	3	5913	5913;5943;5996		16.942	0	1	446910	+		42196	21365	24323	24324	51577;51578;51579	51577					-0.06695983388044624
SFFHFSSFH	9	Unmodified	_SFFHFSSFH_					0	0	0			REV__ENST00000472054.2_1_6:142738255-142764649:+|nuORF	REV__ENST00000472054.2_1_6:142738255-142764649:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.8267822265625	2	571.756341	1141.49813	0.24814	0.00014188	0.35707	0.00020416	0.60521	0.00034603	571.7566446221595	31.787	0.96444	31.787	31.476	32.44	0					59	34	2	0	0	0	0.24311	1	5913	5913		16.942	0	1	446910	+		42197	21365	24323	24324	51580	51580					-0.06695983388044624
SFFITHQQ	8	Unmodified	_SFFITHQQ_					0	0	0		ENSG00000075407|ENST00000685332|ZNF37A	ENSG00000075407|ENST00000685332|ZNF37A	ENSG00000075407|ENST00000685332|ZNF37A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2979736328125	2	504.250892	1006.48723	0.11458	5.778E-05	3.821	0.0019267	3.9356	0.0019845	504.25312844535557	17.085	0.25309	16.968	16.909	17.162	-0.11739					13	8	2	0	0	0	0.34218	1	1549	1549		9.3474	0.75416	1	44948			42198	1045	24324	24325	51581	51581					-0.01575385762339465
SFFIYLLW	8	Unmodified	_SFFIYLLW_					0	0	0			REV__nc|ENSG00000183023|P32418-2|SLC8A1	REV__nc|ENSG00000183023|P32418-2|SLC8A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7920532226562	2	544.794404	1087.57425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.46	1	118.44	117.94	118.94	-0.024147								0	0	0	0.37992	1	30620	30620		0.79363	0.10326	1		+		42199	18232	24325	24326	51582	51582					0.03397020459374289
SFFKKTVL	8	Unmodified	_SFFKKTVL_					0	0	0		TDRD6|p.T979Kfs*7|1|0.07|ENSG00000180113|chr6:46691063-46691075|ACACATGATATGA/-|frameshift_variant;nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6	TDRD6|p.T979Kfs*7|1|0.07|ENSG00000180113|chr6:46691063-46691075|ACACATGATATGA/-|frameshift_variant	TDRD6|p.T979Kfs*7|1|0.07|ENSG00000180113|chr6:46691063-46691075|ACACATGATATGA/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.2920227050781	2	485.292028	968.569503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.16	1	89.16	88.66	89.66	0								0	0	0	0.35663	1	23582	23582		11.64	0.52583	1				42200	7166	24326	24327	51583	51583					0.08396136316594038
SFFSLFNSV	9	Unmodified	_SFFSLFNSV_					0	0	0			REV__ENST00000415076.6_1_7:43648087-43648366:-|nuORF	REV__ENST00000415076.6_1_7:43648087-43648366:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2724609375	2	524.260925	1046.5073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.842	1	33.909	33.409	34.409	0.066704								0	0	0	0.16757	1	6603	6603		30.637	7.9003	1		+		42201	20804	24327	24328	51584	51584					-0.014096348223802124
SFFTIIQKD	9	Unmodified	_SFFTIIQKD_					0	0	0			REV__ENSG00000113522|ENST00000378823|RAD50	REV__ENSG00000113522|ENST00000378823|RAD50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3132934570312	2	549.795132	1097.57571	0.45523	0.00025028	1.813	0.00099677	2.2682	0.0012471	549.7963045858161	76.161	0.84988	76.13	75.749	76.599	-0.031487					50	30	2	0	0	0	0.21303	1	19705	19705		21.747	5.8995	1	177570	+		42202	14811	24328	24329	51585	51585					0.030826097574845335
SFFTIIQKD	9	Unmodified	_SFFTIIQKD_					0	0	0			REV__ENSG00000113522|ENST00000378823|RAD50	REV__ENSG00000113522|ENST00000378823|RAD50	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	549.795132	1097.57571	0.37491	0.00020613	0.73958	0.00040662	1.1145	0.00061275	549.795997693364	76.045	0.44168	76.098	75.808	76.25	0.053421	0.0073328	-0.00071692	NaN	21.747	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190660	+		42203	14811	24328	24329							0.030826097574845335
SFFTIIQKD	9	Unmodified	_SFFTIIQKD_					0	0	0			REV__ENSG00000113522|ENST00000378823|RAD50	REV__ENSG00000113522|ENST00000378823|RAD50	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.795132	1097.57571	0.45523	0.00025028	1.813	0.00099677	2.2682	0.0012471	549.7963045858161	76.161	0.84988	76.13	75.749	76.599	-0.031487	0.038655	0.00046339	NaN	21.747	50	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177570	+		42204	14811	24328	24329							0.030826097574845335
SFGAFLDVAF	10	Unmodified	_SFGAFLDVAF_					0	0	0		ENSG00000166377|ENST00000426216|ATP9B;ENST00000588921.1_3_18:77132616-77137380:+|nuORF	ENSG00000166377|ENST00000426216|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2870483398438	2	537.26875	1072.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.885	1	64.974	64.474	65.474	0.088882								0	0	0	0.30803	1	16147	16147		26.884	5.137	1				42205	6070	24329	24330	51586	51586					-0.010413483053525852
SFGILLYEM	9	Unmodified	_SFGILLYEM_					0	0	0		ENSG00000060140|ENST00000075503|STYK1	ENSG00000060140|ENST00000075503|STYK1	ENSG00000060140|ENST00000075503|STYK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.8302612304688	2	536.772811	1071.53107	0.43427	0.00023311	0.034594	1.8569E-05	0.46887	0.00025168	536.7724314115086	69.175	0.7762	69.156	68.79	69.567	-0.01915					53	27	3	0	0	0	0.22596	1	17352	17352		15.847	5.6638	1	284410			42206	745	24330	24331	51587	51587					-0.0018353738021232857
SFGINIFLLS	10	Unmodified	_SFGINIFLLS_					0	0	0		ENST00000519374.5_1_5:172461837-172461912:+|nuORF	ENST00000519374.5_1_5:172461837-172461912:+|nuORF	ENST00000519374.5_1_5:172461837-172461912:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7966918945312	2	555.813325	1109.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.066	1	50.111	49.611	50.611	0.044891								0	0	0	0.33404	1	11582	11582		21.537	3.402	1				42207	11457	24331	24332	51588	51588					0.061674866541807205
SFGLITASVL	10	Unmodified	_SFGLITASVL_					0	0	0		ENST00000304677.2_1_14:21249438-21249935:+|nuORF	ENST00000304677.2_1_14:21249438-21249935:+|nuORF	ENST00000304677.2_1_14:21249438-21249935:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2770080566406	2	504.292225	1006.5699	0.45383	0.00022887	-0.0034064	-1.7178E-06	0.45043	0.00022715	504.2922307768696	57.1	0.69654	57.1	56.799	57.495	0					59	25	3	0	0	0	0.29092	1	13778	13778		21.537	2.175	1	1194800			42208	9260	24332	24333	51589	51589					0.06687511245809219
SFGLITASVL	10	Unmodified	_SFGLITASVL_					0	0	0		ENST00000304677.2_1_14:21249438-21249935:+|nuORF	ENST00000304677.2_1_14:21249438-21249935:+|nuORF	ENST00000304677.2_1_14:21249438-21249935:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.27685546875	2	504.292225	1006.5699	0.32689	0.00016485	0.16934	8.5396E-05	0.49623	0.00025025	504.2923166181032	56.962	0.69276	57.04	56.704	57.397	0.078674					58	23	3	0	0	0	0.19885	1	13753	13753		32.786	11.039	1	1037200			42209	9260	24332	24333	51590	51590					0.06687511245809219
SFGLYGNKYTL	11	Unmodified	_SFGLYGNKYTL_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;REV3L|p.N1558Kfs*2|1|0.35|ENSG00000009413|chr6:111373681-111373682|-/T|frameshift_variant	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.873046875	3	421.552039	1261.63429	-0.044711	-1.8848E-05	-3.7214	-0.0015688	-3.7661	-0.0015876	421.884664340766	45.715	0.59616	45.775	45.475	46.072	0.059834					26	20	2	0	0	0	0.33025	1	10153	10153		9.2438	4.1963	1	311900			42210	407	24333	24334	51591	51591					0.01393666331955501
SFGRRLLVL	9	Unmodified	_SFGRRLLVL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3052978515625	2	530.834926	1059.6553	0.46129	0.00024487	-1.6208	-0.00086036	-1.1595	-0.00061548	531.3355815023416	70.045	0.27757	70.023	69.832	70.109	-0.022087					13	9	2	0	0	0	0.25622	1	17701	17701		7.2892	0.93513	1	44041			42211	4253	24334	24335	51592	51592					0.12785721222144275
SFGTFRRCS	9	Unmodified	_SFGTFRRCS_					0	0	0		ENSG00000183722|ENST00000379589|LHFPL6	ENSG00000183722|ENST00000379589|LHFPL6	ENSG00000183722|ENST00000379589|LHFPL6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7536010742188	2	530.753276	1059.492	0.42894	0.00022766	0.2499	0.00013263	0.67884	0.0003603	530.7531843567363	16.749	0.63047	16.749	16.491	17.122	0					62	21	5	0	0	0	0.29638	1	1428	1428		9.3831	1.473	1	310550			42212	7393	24335	24336	51593	51593					-0.035368248912163835
SFHLNKLKYN	10	Unmodified	_SFHLNKLKYN_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.8993225097656	3	421.899662	1262.67716	-0.40103	-0.00016919	-0.85738	-0.00036173	-1.2584	-0.00053092	421.89932365207216	12.395	0.25323	12.395	12.273	12.526	0					16	7	3	0	0	0	0.41085	1	116	116		0.62683	0.35781	1	52379			42213	2160	24336	24337	51594	51594					0.05632481180055038
SFHNIHNTF	9	Unmodified	_SFHNIHNTF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.7646484375	2	558.764697	1115.51484	0.37301	0.00020842	-0.39003	-0.00021793	-0.017023	-9.5119E-06	558.7644263043106	30.313	0.94464	30.313	30.034	30.979	0					55	33	2	0	0	0	4.6814E-06	1	5553	5553		159.1	106.83	1	907000			42214	5131	24337	24338	51595	51595					-0.038294825021012
SFHNIHNTF	9	Unmodified	_SFHNIHNTF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.7647705078125	2	558.764697	1115.51484	0.40419	0.00022585	-0.2921	-0.00016322	0.11209	6.263E-05	558.7643238073073	30.274	0.87672	30.302	30.02	30.896	0.027946					83	30	4	0	0	0	2.2231E-07	4	5545	5498;5545;5590;5609		171.46	122.36	1	900430			42215	5131	24337	24338	51596;51597;51598;51599	51597					-0.038294825021012
SFHNIHNTF	9	Unmodified	_SFHNIHNTF_					0	0	0		ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENSG00000154473|ENST00000368865|BUB3	ENSG00000154473|ENST00000368865|BUB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.7642211914062	2	558.764697	1115.51484	-0.043205	-2.4142E-05	0.19839	0.00011085	0.15519	8.6713E-05	558.7645699453437	30.299	0.81769	30.326	30.019	30.836	0.027157					88	28	5	0	0	0	0.0028032	1	5482	5482		103.82	76.94	1	975910			42216	5131	24337	24338	51600	51600					-0.038294825021012
SFHQLLSTF	9	Unmodified	_SFHQLLSTF_					0	0	0			REV__nc|ENSG00000205702|A0A087X1C5|CYP2D7	REV__nc|ENSG00000205702|A0A087X1C5|CYP2D7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8339233398438	2	540.279649	1078.54475	0.52634	0.00028437	1.252	0.00067642	1.7783	0.00096079	540.2801257929144	43.265	0.11523	43.349	43.268	43.384	0.083992					5	3	2	0	0	0	0.23783	1	9484	9484		7.9102	0	1	63042	+		42217	23173	24338	24339	51601	51601					0.00861456443226416
SFHSASDIF	9	Unmodified	_SFHSASDIF_					0	0	0		ENSG00000111670|ENST00000299314|GNPTAB;GNPTAB|p.D706Tfs*4|1|0.21|ENSG00000111670|chr12:101764802-101764802|T/-|frameshift_variant;ENST00000550352.1_1_12:102179766-102183828:-|nuORF;nc|ENSG00000111670|Q3T906-2|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.3421325683594	2	505.732532	1009.45051	0.1493	7.5507E-05	0.73123	0.0003698	0.88053	0.00044531	505.7328883860943	74.098	1.0419	74.098	73.363	74.405	0					49	35	2	0	0	0	0.25417	1	18983	18983		8.5933	0.68312	1	257580			42218	2379	24339	24340	51602	51602					-0.05383682378908361
SFHSVLSLP	9	Unmodified	_SFHSVLSLP_					0	0	0		nc|ENSG00000144445|A0AUZ9-4|KANSL1L;nc|ENSG00000144445|A0AUZ9-3|KANSL1L;nc|ENSG00000144445|A0AUZ9-2|KANSL1L;ENSG00000144445|ENST00000281772|KANSL1L	nc|ENSG00000144445|A0AUZ9-4|KANSL1L	nc|ENSG00000144445|A0AUZ9-4|KANSL1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7801208496094	2	493.768917	985.523281	0.4932	0.00024353	0.4063	0.00020062	0.89949	0.00044414	493.76911902754307	26.588	0.40534	26.565	26.356	26.762	-0.022236					18	13	2	0	0	0	0.31038	1	4393	4393		7.2892	7.2892	1	72351			42219	4585	24340	24341	51603	51603					0.029940714145254788
SFHVWFWNRWW	11	Unmodified	_SFHVWFWNRWW_					0	0	0			REV__ENST00000437634.1_1_2:154277901-154278186:-|nuORF	REV__ENST00000437634.1_1_2:154277901-154278186:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.226806640625	4	413.449286	1649.76804	-0.0090834	-3.7555E-06	-2.2417	-0.00092684	-2.2508	-0.0009306	413.44837572325804	14.622	0.51485	14.517	14.308	14.823	-0.10466					47	17	4	0	0	0	0.33351	1	797	797		0.094841	0.094841	1	71608	+		42220	21016	24341	24342	51604	51604					-0.030856300518280477
SFHYPNCCVT	10	Unmodified	_SFHYPNCCVT_					0	0	0			REV__nc|ENSG00000137834|O43541-4|SMAD6	REV__nc|ENSG00000137834|O43541-4|SMAD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.7850952148438	2	585.738976	1169.4634	0.42234	0.00024738	-0.92898	-0.00054414	-0.50664	-0.00029676	585.7386351784993	63.509	0.60347	63.509	63.256	63.859	0					59	21	4	0	0	0	0.31358	1	15740	15740		13.906	7.1829	1	475360	+		42221	15887	24342	24343	51605	51605					-0.11455310582687162
SFHYPNCCVT	10	Unmodified	_SFHYPNCCVT_					0	0	0			REV__nc|ENSG00000137834|O43541-4|SMAD6	REV__nc|ENSG00000137834|O43541-4|SMAD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.78515625	2	585.738976	1169.4634	0.37991	0.00022253	-1.0464	-0.00061289	-0.66645	-0.00039036	585.7385040746746	63.388	0.56912	63.484	63.256	63.825	0.095726					49	19	4	0	0	0	0.31358	1	15706	15706		13.906	0.86358	1	442720	+		42222	15887	24342	24343	51606	51606					-0.11455310582687162
SFIFAEECF	9	Unmodified	_SFIFAEECF_					0	0	0		chr11:103391535-103399663|312|10.06|0.06|7.28|+|2|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|64	chr11:103391535-103399663|312|10.06|0.06|7.28|+|2|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|64	chr11:103391535-103399663|312|10.06|0.06|7.28|+|2|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|64	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8370971679688	2	546.738968	1091.46338	0.69243	0.00037858	-0.65622	-0.00035878	0.036213	1.9799E-05	546.7387656529136	72.702	0.67709	72.673	72.396	73.073	-0.029305					41	23	2	0	0	0	0.25526	1	18449	18449		7.9102	0	1	286150			42223	125	24343	24344	51607	51607					-0.07868987311030651
SFIKNSKVF	9	Unmodified	_SFIKNSKVF_					0	0	0			REV__ENST00000357388.7_1_3:160151664-160151871:+|nuORF	REV__ENST00000357388.7_1_3:160151664-160151871:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7393188476562	2	535.305667	1068.59678	0.24728	0.00013237	0.18668	9.993E-05	0.43396	0.0002323	535.3056088313496	61.942	1.0647	61.934	61.477	62.542	-0.0085564					80	38	3	0	0	0	0.16853	1	15125	15125		38.176	2.0485	1	429000	+		42224	20214	24344	24345	51608	51608					0.06522619856991696
SFIKTNRY	8	Unmodified	_SFIKTNRY_					0	0	0		nc|ENSG00000186510|P51800-2|CLCNKA;nc|ENSG00000186510|P51800-3|CLCNKA;ENSG00000186510|ENST00000331433|CLCNKA	nc|ENSG00000186510|P51800-2|CLCNKA	nc|ENSG00000186510|P51800-2|CLCNKA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2186889648438	2	514.779816	1027.54508	0.052369	2.6959E-05	0.08118	4.179E-05	0.13355	6.8749E-05	515.2814078457017	18.074	0.25287	17.957	17.812	18.065	-0.11739					14	8	2	0	0	0	0.34414	1	1808	1808		2.0598	0	1	23955			42225	7624	24345	24346	51609	51609					0.03240876163090434
SFILLYISQ	9	Unmodified	_SFILLYISQ_					0	0	0			REV__chr10:89462624-89506310|321|10.73|0.6|4.16|-|2|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|48	REV__chr10:89462624-89506310|321|10.73|0.6|4.16|-|2|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|48	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.3240966796875	2	542.307875	1082.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.653	1	43.653	43.153	44.153	0								0	0	0	0.22377	1	9608	9608		14.838	0.25658	1		+		42226	13168	24346	24347	51610	51610					0.06320084279900584
SFILLYISQ	9	Unmodified	_SFILLYISQ_					0	0	0			REV__chr10:89462624-89506310|321|10.73|0.6|4.16|-|2|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|48	REV__chr10:89462624-89506310|321|10.73|0.6|4.16|-|2|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.323974609375	2	542.307875	1082.6012	0.59461	0.00032246	-1.9213	-0.0010419	-1.3266	-0.00071945	542.3058234761961	43.328	0.43747	43.412	43.166	43.604	0.083996					22	15	2	0	0	0	0.25989	1	9554	9554		14.838	0.25658	1	195340	+		42227	13168	24346	24347	51611	51611					0.06320084279900584
SFIPSSVPATF	11	Unmodified	_SFIPSSVPATF_					0	0	0		ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENST00000441188.2_1_X:92477682-92478501:-|nuORF	ENSG00000006125|ENST00000610402|AP2B1;ENST00000441188.2_1_X:92477682-92478501:-|nuORF	ENSG00000006125|ENST00000610402|AP2B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.8007202148438	2	576.800414	1151.58628	0.053867	3.1071E-05	0.26772	0.00015442	0.32159	0.00018549	576.8005375251221	76.122	0.87464	76.122	75.85	76.725	0					63	31	3	0	0	0	0.00076939	2	19617	19570;19617		100.09	58.76	1	712240			42228	355;10552	24347	24348	51612;51613	51613					0.01654592411887279
SFIPSSVPATF	11	Unmodified	_SFIPSSVPATF_					0	0	0		ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENST00000441188.2_1_X:92477682-92478501:-|nuORF	ENSG00000006125|ENST00000610402|AP2B1;ENST00000441188.2_1_X:92477682-92478501:-|nuORF	ENSG00000006125|ENST00000610402|AP2B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8005981445312	2	576.800414	1151.58628	0.20991	0.00012108	-0.38299	-0.00022091	-0.17308	-9.9835E-05	576.800115400354	76.08	0.91566	76.134	75.808	76.724	0.053421					62	32	4	0	0	0	2.4606E-05	3	19553	19553;19577;19619		110.55	64.853	1	919780			42229	355;10552	24347	24348	51614;51615;51616	51614					0.01654592411887279
SFIPSSVPATF	11	Unmodified	_SFIPSSVPATF_					0	0	0		ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENST00000441188.2_1_X:92477682-92478501:-|nuORF	ENSG00000006125|ENST00000610402|AP2B1;ENST00000441188.2_1_X:92477682-92478501:-|nuORF	ENSG00000006125|ENST00000610402|AP2B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8009643554688	2	576.800414	1151.58628	0.27774	0.0001602	-0.21675	-0.00012502	0.06099	3.5179E-05	576.8001987854431	76.18	0.82508	76.149	75.829	76.654	-0.031487					66	29	3	0	0	0	0.00026687	3	19567	19567;19613;19691		107.1	68.924	1	1075800			42230	355;10552	24347	24348	51617;51618;51619	51617					0.01654592411887279
SFISLTGVVF	10	Unmodified	_SFISLTGVVF_					0	0	0		nc|ENSG00000164893|Q8TCU3-2|SLC7A13;ENSG00000164893|ENST00000297524|SLC7A13	nc|ENSG00000164893|Q8TCU3-2|SLC7A13	nc|ENSG00000164893|Q8TCU3-2|SLC7A13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7393798828125	2	535.30005	1068.58555	0.026128	1.3986E-05	0.41201	0.00022055	0.43813	0.00023453	535.3005011550365	61.309	0.29258	61.406	61.273	61.566	0.096985					19	10	2	0	0	0	0.20667	1	15040	15040		46.021	0	1	324610			42231	5892	24348	24349	51620	51620					0.05399797762856906
SFISLTGVVF	10	Unmodified	_SFISLTGVVF_					0	0	0		nc|ENSG00000164893|Q8TCU3-2|SLC7A13;ENSG00000164893|ENST00000297524|SLC7A13	nc|ENSG00000164893|Q8TCU3-2|SLC7A13	nc|ENSG00000164893|Q8TCU3-2|SLC7A13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7393798828125	2	535.30005	1068.58555	0.21738	0.00011636	0.3068	0.00016423	0.52417	0.00028059	535.299573820763	61.371	0.4188	61.362	61.194	61.612	-0.0094566					23	15	2	0	0	0	0.20667	1	15071	15071		46.021	0	1	415410			42232	5892	24348	24349	51621	51621					0.05399797762856906
SFITDQDSDFE	11	Unmodified	_SFITDQDSDFE_					0	0	0			REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319	REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.5711975097656	3	435.18234	1302.52519	-0.13368	-5.8175E-05	1.1836	0.00051508	1.0499	0.0004569	435.1829121627842	19.266	0.4562	19.15	18.919	19.375	-0.11592					25	15	2	0	0	0	0.33336	1	2223	2223		1.1098	0.41209	1	47793	+		42233	15852	24349	24350	51622	51622					-0.11397009148868165
SFITDVDYL	9	Unmodified	_SFITDVDYL_					0	0	0		nc|ENSG00000164638|Q7RTT9-2|SLC29A4;ENSG00000164638|ENST00000396872|SLC29A4	nc|ENSG00000164638|Q7RTT9-2|SLC29A4	nc|ENSG00000164638|Q7RTT9-2|SLC29A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2794189453125	2	536.763497	1071.51244	0.53907	0.00028935	3.6268	0.0019467	4.1659	0.0022361	537.2676929429294	39.921	0.44296	40.02	39.817	40.26	0.099407					18	15	2	0	0	0	0.2451	1	8532	8532		15.847	4.2069	1	97780			42234	12806	24350	24351	51623	51623					-0.02045375750412859
SFIVGGKPKF	10	Unmodified	_SFIVGGKPKF_					0	0	0			REV__ENSG00000089048|ENST00000617257|ESF1	REV__ENSG00000089048|ENST00000617257|ESF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.829345703125	2	540.316035	1078.61752	0.67783	0.00036624	1.3776	0.00074433	2.0554	0.0011106	540.3166432477352	66.263	1.3374	66.263	65.293	66.63	0					89	47	2	0	0	0	0.31039	1	16673	16673		18.146	6.5061	1	853980	+		42235	14021	24351	24352	51624	51624					0.08135210236650892
SFIVVMFDFI	10	Unmodified	_SFIVVMFDFI_					0	0	0			REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.547119140625	3	406.547349	1216.62022	-0.19737	-8.024E-05	0.70422	0.0002863	0.50685	0.00020606	406.54761068195836	33.502	0.88259	33.568	33.271	34.153	0.066704					83	31	4	0	0	0	0.31207	1	6472	6472		12.873	0	1	997970	+		42236	15816	24352	24353	51625	51625					0.020572975793129444
SFKANHERF	9	Unmodified	_SFKANHERF_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2950439453125	2	568.285797	1134.55704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.218	1	67.202	66.702	67.702	-0.016296								0	0	0	0.20639	1	16855	16855		20.454	3.3671	1		+		42237	13950	24353	24354	51626	51626					-0.004855070937082928
SFKEKVRARG	10	Unmodified	_SFKEKVRARG_					0	0	0			REV__ENSG00000119523|ENST00000476832|ALG2	REV__ENSG00000119523|ENST00000476832|ALG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3446655273438	2	589.343646	1176.67274	0.062049	3.6568E-05	-0.50741	-0.00029904	-0.44536	-0.00026247	589.3433082742267	97.484	0.85527	97.484	97.135	97.991	0					153	89	2	0	0	0	0.38773	1	25970	25970		5.7319	0	1	132520	+		42238	15045	24354	24355	51627	51627					0.09147016757128767
SFKEKVRARG	10	Unmodified	_SFKEKVRARG_					0	0	0			REV__ENSG00000119523|ENST00000476832|ALG2	REV__ENSG00000119523|ENST00000476832|ALG2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	589.343646	1176.67274	0.062049	3.6568E-05	-0.50741	-0.00029904	-0.44536	-0.00026247	589.3433082742267	97.484	0.85527	97.484	97.135	97.991	0	0.058628	3.3304E-05	NaN	5.7319	153	89	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132520	+		42239	15045	24354	24355							0.09147016757128767
SFKKAQVVQ	9	Unmodified	_SFKKAQVVQ_					0	0	0			REV__ENSG00000164116|ENST00000506455|GUCY1A1	REV__ENSG00000164116|ENST00000506455|GUCY1A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.81591796875	2	517.803291	1033.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.669	1	48.701	48.201	49.201	0.032043								0	0	0	0.19013	1	11145	11145		25.399	0	1		+		42240	17127	24355	24356	51628	51628					0.07657735714224145
SFKLSKRMLN	10	Unmodified	_SFKLSKRMLN_					0	0	0			REV__ENST00000477822.2_1_6:153291978-153292182:-|nuORF	REV__ENST00000477822.2_1_6:153291978-153292182:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.88055419921875	3	408.569147	1222.68561	-0.39337	-0.00016072	-0.27421	-0.00011203	-0.66758	-0.00027275	408.5690686355135	28.183	1.2215	28.183	27.814	29.035	0					106	42	4	0	0	0	0.31867	1	5038	5038		2.8433	0.93691	1	1025300	+		42241	21442	24356	24357	51629	51629					0.08317711825020524
SFKMFREGSY	10	Unmodified	_SFKMFREGSY_					0	0	0			REV__ENSG00000132357|ENST00000254691|CARD6	REV__ENSG00000132357|ENST00000254691|CARD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.1888427734375	3	417.865741	1250.57539	0.23757	9.9273E-05	2.2072	0.00092233	2.4448	0.0010216	418.2007915591524	44.83	0.38513	44.898	44.765	45.15	0.068569					21	13	2	0	0	0	0.31867	1	10010	10010		7.9454	4.0691	1	172840	+		42242	15563	24357	24358	51630	51630					-0.03987133234022622
SFKRCLRPSK	10	Unmodified	_SFKRCLRPSK_					0	0	0			REV__ENSG00000113319|ENST00000265080|RASGRF2	REV__ENSG00000113319|ENST00000265080|RASGRF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.54522705078125	3	407.901008	1220.6812	-0.18623	-7.5965E-05	-0.074326	-3.0318E-05	-0.26056	-0.00010628	407.9009905625372	17.911	1.2929	17.793	16.858	18.151	-0.11739					61	45	2	0	0	0	0.32082	1	1649	1649		3.3196	1.667	1	151860	+		42243	14805	24358	24359	51631	51631					0.07968247402072848
SFKRCLRPSK	10	Unmodified	_SFKRCLRPSK_					0	0	0			REV__ENSG00000113319|ENST00000265080|RASGRF2	REV__ENSG00000113319|ENST00000265080|RASGRF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	407.901008	1220.6812	-0.13224	-5.3942E-05	-0.20551	-8.3829E-05	-0.33776	-0.00013777	407.90099058186934	17.656	1.0569	17.656	17.242	18.299	0	-0.085324	-9.469E-05	NaN	1.5923	83	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153670	+		42244	14805	24358	24359							0.07968247402072848
SFKVITKA	8	Unmodified	_SFKVITKA_					0	0	0			REV__nc|ENSG00000129071|O95243-3|MBD4	REV__nc|ENSG00000129071|O95243-3|MBD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.757568359375	2	447.276378	892.538203	0.23516	0.00010518	-0.78155	-0.00034957	-0.54639	-0.00024439	447.27592183275345	37.734	0.4328	37.832	37.604	38.037	0.097527					29	15	2	0	0	0	0.34218	1	7750	7750		9.3474	0	1	275630	+		42245	15398	24359	24360	51632	51632					0.08763563282491305
SFKVITKA	8	Unmodified	_SFKVITKA_					0	0	0			REV__nc|ENSG00000129071|O95243-3|MBD4	REV__nc|ENSG00000129071|O95243-3|MBD4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	447.276378	892.538203	0.40537	0.00018131	-0.65053	-0.00029097	-0.24516	-0.00010966	447.27587361372326	37.861	0.47598	37.861	37.616	38.092	0	0.0053684	0.00016756	NaN	9.3474	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297660	+		42246	15398	24359	24360							0.08763563282491305
SFKVITKA	8	Unmodified	_SFKVITKA_					0	0	0			REV__nc|ENSG00000129071|O95243-3|MBD4	REV__nc|ENSG00000129071|O95243-3|MBD4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	447.276378	892.538203	0.23513	0.00010517	-1.045	-0.00046741	-0.80989	-0.00036224	447.2758005929635	37.783	0.46279	37.874	37.609	38.072	0.090881	0.018484	-0.00018534	NaN	9.3474	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326800	+		42247	15398	24359	24360							0.08763563282491305
SFLCCRNPPCP	11	Unmodified	_SFLCCRNPPCP_					0	0	0		ENST00000600583.5_1_19:50430999-50432707:-|nuORF	ENST00000600583.5_1_19:50430999-50432707:-|nuORF	ENST00000600583.5_1_19:50430999-50432707:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.22674560546875	3	412.848928	1235.52495	-0.13287	-5.4854E-05	4.3806	0.0018085	4.2477	0.0017537	412.8510090770379	14.577	0.18937	14.511	14.373	14.563	-0.066067					9	6	2	0	0	0	0.33255	1	766	766		1.2148	0.021489	1	11408			42248	12250	24360	24361	51633	51633					-0.08338702155060673
SFLCFTPFQS	10	Unmodified	_SFLCFTPFQS_					0	0	0		ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENST00000520571.1_1_8:142199090-142200632:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3184204101562	2	588.773342	1175.53213	0.45546	0.00026816	0.11257	6.6277E-05	0.56803	0.00033444	588.7736930280529	72.215	0.64933	72.215	71.963	72.613	0					55	23	4	0	0	0	0.31237	1	18511	18511		16.149	2.2431	1	442510			42249	11476	24361	24362	51634	51634					-0.04861323011323293
SFLCFTPFQS	10	Unmodified	_SFLCFTPFQS_					0	0	0		ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENST00000520571.1_1_8:142199090-142200632:+|nuORF	ENST00000520571.1_1_8:142199090-142200632:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.7735595703125	2	588.773342	1175.53213	0.4675	0.00027525	0.069806	4.11E-05	0.53731	0.00031635	588.7734665852734	72.268	0.55965	72.24	72.009	72.568	-0.027275					44	19	4	0	0	0	0.15473	1	18389	18389		38.176	4.7307	1	463360			42250	11476	24361	24362	51635	51635					-0.04861323011323293
SFLEEESL	8	Unmodified	_SFLEEESL_					0	0	0		ENST00000577226.5_1_17:27234445-27234733:-|nuORF	ENST00000577226.5_1_17:27234445-27234733:-|nuORF	ENST00000577226.5_1_17:27234445-27234733:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.2269592285156	2	477.226748	952.438943	0.022723	1.0844E-05	1.0556	0.00050377	1.0784	0.00051462	477.22823159518106	46.352	1.5281	46.352	45.175	46.703	0					73	55	2	0	0	0	0.41758	1	10423	10423		16.942	2.3606	1	681820			42251	12053	24362	24363	51636	51636					-0.03917924192887767
SFLFVHPEWRR	11	Unmodified	_SFLFVHPEWRR_					0	0	0		nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.29791259765625	3	491.929844	1472.7677	0.3053	0.00015019	-0.80726	-0.00039712	-0.50196	-0.00024693	491.92927786262766	52.089	0.51859	52.089	51.836	52.354	0					51	18	4	0	0	0	0.33287	1	12180	12180		2.8433	2.8433	1	626460			42252	4867	24363	24364	51637	51637					0.05022950228294576
SFLFVHPEWRR	11	Unmodified	_SFLFVHPEWRR_					0	0	0		nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2976989746094	3	491.929844	1472.7677	0.38754	0.00019064	-0.86095	-0.00042352	-0.47341	-0.00023288	491.9292728273732	51.986	0.49261	52.037	51.817	52.309	0.050571					49	17	4	0	0	0	0.33287	1	12170	12170		2.8433	2.8433	1	787860			42253	4867	24363	24364	51638	51638					0.05022950228294576
SFLIELEKV	9	Unmodified	_SFLIELEKV_					0	0	0		ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.79248046875	2	539.313158	1076.61176	0.48167	0.00025977	-2.7161	-0.0014649	-2.2345	-0.0012051	539.3115136760647	29.731	0.44271	29.743	29.443	29.886	0.012266					21	14	2	0	0	0	0.25938	1	5284	5284		4.3292	0.73274	1	180100			42254	6946	24364	24365	51639	51639					0.07652066934338109
SFLKAEKTF	9	Unmodified	_SFLKAEKTF_					0	0	0			REV__ENSG00000205413|ENST00000379958|SAMD9	REV__ENSG00000205413|ENST00000379958|SAMD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.8109130859375	2	535.797675	1069.5808	0.2121	0.00011365	-0.19789	-0.00010603	0.014213	7.6155E-06	535.7976009508204	41.317	0.32349	41.407	41.188	41.511	0.090252					21	11	3	0	0	0	0.23007	1	8880	8880		19.257	4.4187	1	510520	+		42255	18992	24365	24366	51640	51640					0.04878913620086678
SFLKEKVNF	9	Unmodified	_SFLKEKVNF_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3099975585938	2	556.310949	1110.60735	0.39495	0.00021972	-0.65479	-0.00036427	-0.25984	-0.00014455	556.3102013432792	77.06	0.42455	77.115	76.922	77.346	0.05542					22	14	2	0	0	0	0.17787	1	19927	19927		26.884	0	1	135800			42256	12881;7561	24366	24367	51641	51641					0.05646602511410492
SFLKEKVNF	9	Unmodified	_SFLKEKVNF_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	556.310949	1110.60735	0.56645	0.00031512	-0.39969	-0.00022235	0.16676	9.2769E-05	556.3104945288918	77.153	0.28291	77.122	76.93	77.213	-0.031334	0.0032962	0.00012062	NaN	26.884	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139290			42257	12881;7561	24366	24367							0.05646602511410492
SFLLKKARE	9	Unmodified	_SFLLKKARE_					0	0	0		ENSG00000125965|ENST00000374369|GDF5	ENSG00000125965|ENST00000374369|GDF5	ENSG00000125965|ENST00000374369|GDF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.91357421875	2	546.332216	1090.64988	0.62344	0.00034061	-0.39215	-0.00021424	0.23129	0.00012636	546.3316170023277	19.933	0.25695	19.817	19.67	19.927	-0.11592					11	8	2	0	0	0	0.26145	1	2358	2358		2.0598	0.40713	1	36667			42258	3247	24367	24368	51642	51642					0.10817997639628629
SFLLMLMLF	9	Unmodified	_SFLLMLMLF_					0	0	0		chr10:89462624-89506310|321|10.73|0.6|4.16|-|0|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|91	chr10:89462624-89506310|321|10.73|0.6|4.16|-|0|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|91	chr10:89462624-89506310|321|10.73|0.6|4.16|-|0|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|91	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7926635742188	2	557.805599	1113.59665	0.29254	0.00016318	0.70023	0.00039059	0.99276	0.00055377	557.8056726767735	69.043	1.2872	69.043	68.736	70.023	0					108	46	4	0	0	0	0.12846	1	17554	17554		34.102	5.6156	1	1987600			42259	119	24368	24369	51643	51643					0.044391605410964985
SFLPPLPSL	9	Unmodified	_SFLPPLPSL_					0	0	0		nc|ENSG00000133619|A5PL33-3|KRBA1;nc|ENSG00000133619|A5PL33-2|KRBA1;nc|ENSG00000133619|A5PL33|KRBA1;ENSG00000133619|ENST00000496259|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8005065917969	2	485.784036	969.553519	0.3756	0.00018246	-1.0759	-0.00052266	-0.70031	-0.0003402	485.7835318559078	88.839	0.63873	88.838	88.562	89.201	-0.00080872					33	24	2	0	0	0	0.25989	2	23441	23441;23517		14.838	2.3067	1	233200			42260	3718	24369	24370	51644;51645	51644					0.06752430079700389
SFLPRAPSLIL	11	Unmodified	_SFLPRAPSLIL_					0	0	0		ENST00000368680.3_1_1:153651158-153651548:+|nuORF	ENST00000368680.3_1_1:153651158-153651548:+|nuORF	ENST00000368680.3_1_1:153651158-153651548:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2601318359375	3	405.248291	1212.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.393	1	71.366	70.866	71.866	-0.027275								0	0	0	0.32418	1	18133	18133		7.4771	0.37534	1				42261	9766	24370	24371	51646	51646					0.12519126362280986
SFLPTSPLLGF	11	Unmodified	_SFLPTSPLLGF_					0	0	0		ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3446655273438	2	589.826432	1177.63831	0.097103	5.7274E-05	1.5454	0.00091151	1.6425	0.00096878	589.8272183997103	96.939	0.3735	96.939	96.769	97.142	0					53	31	2	0	0	0	0.31312	1	25970	25970		21.537	12.19	1	82978			42262	10249	24371	24372	51647	51647					0.056597558256498814
SFLPTSPLLGF	11	Unmodified	_SFLPTSPLLGF_					0	0	0		ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3438110351562	2	589.826432	1177.63831	0.20404	0.00012035	1.0028	0.0005915	1.2069	0.00071184	589.8269437097609	96.87	0.41706	96.94	96.801	97.218	0.070465					51	38	2	0	0	0	0.32477	1	25891	25891		16.149	11.393	1	96156			42263	10249	24371	24372	51648	51648					0.056597558256498814
SFLPTSPLLGF	11	Unmodified	_SFLPTSPLLGF_					0	0	0		ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	ENST00000409443.6_1_2:172016940-172017408:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.34375	2	589.826432	1177.63831	0.39078	0.00023049	0.88295	0.00052079	1.2737	0.00075128	589.8268576524408	97.029	0.36069	97.023	96.841	97.202	-0.0055466					35	27	2	0	0	0	0.2973	1	25981	25981		26.268	16.885	1	165740			42264	10249	24371	24372	51649	51649					0.056597558256498814
SFLQILPVL	9	Unmodified	_SFLQILPVL_					0	0	0		nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000198642|ENST00000359039|KLHL9;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	nc|ENSG00000003096|Q9P2N7-2|KLHL13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7415161132812	2	515.320786	1028.62702	0.31364	0.00016163	-1.136	-0.00058539	-0.82233	-0.00042376	515.3202808851033	67.484	0.45466	67.484	67.193	67.647	0					25	15	2	0	0	0	0.24848	1	16903	16903		13.906	4.5229	1	150360			42265	300	24372	24373	51650	51650					0.11384978522164602
SFLQLEQEN	9	Unmodified	_SFLQLEQEN_					0	0	0		ENSG00000234409|ENST00000439765|CCDC188	ENSG00000234409|ENST00000439765|CCDC188	ENSG00000234409|ENST00000439765|CCDC188	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2449951171875	2	554.269478	1106.5244	0.25551	0.00014162	2.1602	0.0011973	2.4157	0.0013389	554.2703508930408	67.921	0.64449	67.905	67.506	68.151	-0.016296					39	22	3	0	0	0	0.25202	1	17049	17049		10.824	1.4765	1	216560			42266	8485	24373	24374	51651	51651					-0.024597590072289677
SFLQLKFWKIY	11	Unmodified	_SFLQLKFWKIY_					0	0	0		nc|ENSG00000188820|Q5R3K3-2|CALHM6;ENSG00000188820|ENST00000368605|CALHM6	nc|ENSG00000188820|Q5R3K3-2|CALHM6	nc|ENSG00000188820|Q5R3K3-2|CALHM6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.6363220214844	3	491.614862	1471.82276	0.35669	0.00017536	-2.4783	-0.0012184	-2.1216	-0.001043	491.9482646419443	57.107	0.19464	57.088	56.973	57.168	-0.019081					8	6	2	0	0	0	0.33122	1	13739	13739		7.0371	0.41363	1	130800			42267	7778	24374	24375	51652	51652					0.105719439762197
SFLTFAPSVL	10	Unmodified	_SFLTFAPSVL_					0	0	0		nc|ENSG00000106038|P49640-2|EVX1;ENSG00000106038|ENST00000496902|EVX1	nc|ENSG00000106038|P49640-2|EVX1	nc|ENSG00000106038|P49640-2|EVX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.3003540039062	2	541.30005	1080.58555	0.68049	0.00036835	-0.73507	-0.00039789	-0.05458	-2.9544E-05	541.2997442684704	64.64	1.2723	64.63	64.101	65.374	-0.0095291					122	46	5	0	0	0	0.051528	1	16033	16033		58.679	5.2748	1	3546400			42268	2051	24375	24376	51653	51653					0.04847797762840855
SFLTRTCC	8	Unmodified	_SFLTRTCC_					0	0	0		ENST00000480614.1_1_6:43746820-43747063:+|nuORF	ENST00000480614.1_1_6:43746820-43747063:+|nuORF	ENST00000480614.1_1_6:43746820-43747063:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7774353027344	2	465.71223	929.409908	0.15716	7.3191E-05	-3.061	-0.0014256	-2.9039	-0.0013524	465.71049099817066	69.886	0.49005	69.864	69.647	70.137	-0.022087					28	17	2	0	0	0	0.34247	1	17640	17640		8.5933	2.2392	1	92590			42269	11011	24376	24377	51654	51654					-0.05762063294548625
SFLVKKKKT	9	Unmodified	_SFLVKKKKT_					0	0	0			REV__ENST00000538466.5_1_6:111982525-111982588:-|nuORF	REV__ENST00000538466.5_1_6:111982525-111982588:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2901000976562	2	539.852784	1077.69102	0.57691	0.00031144	-1.6353	-0.00088284	-1.0584	-0.00057139	539.851776519428	57.447	0.4473	57.447	57.246	57.693	0					23	15	3	0	0	0	0.25526	1	13900	13900		1.8442	0	1	251530	+		42270	22101	24377	24378	51655	51655					0.15527758679127146
SFLVLQKTF	9	Unmodified	_SFLVLQKTF_					0	0	0		ENST00000417178.6_1_10:135113574-135122343:-|nuORF;ENST00000543663.5_1_10:135113574-135116423:-|nuORF	ENST00000417178.6_1_10:135113574-135122343:-|nuORF	ENST00000417178.6_1_10:135113574-135122343:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.81591796875	2	541.815867	1081.61718	0.57993	0.00031421	0.25995	0.00014085	0.83988	0.00045506	541.816123062082	73.474	0.37605	73.445	73.209	73.585	-0.029305					31	13	3	0	0	0	0.10197	1	18770	18770		37.974	0	1	176400			42271	10329	24378	24379	51656	51656					0.07963790516805602
SFLYLVVLQF	10	Unmodified	_SFLYLVVLQF_					0	0	0			REV__nc|ENSG00000205336|Q9Y653-5|ADGRG1	REV__nc|ENSG00000205336|Q9Y653-5|ADGRG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.55242919921875	3	410.237392	1227.69035	0.19421	7.9672E-05	2.865	0.0011753	3.0592	0.001255	410.23862712209217	44.89	0.46493	44.959	44.739	45.204	0.068569					27	16	2	0	0	0	0.32068	1	9928	9928		0.62683	0	1	141320	+		42272	18988	24379	24380	51657	51657					0.08560919239425857
SFLYSPTPQ	9	Unmodified	_SFLYSPTPQ_					0	0	0			REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2471313476562	2	520.258382	1038.50221	0.33894	0.00017634	0.13362	6.9515E-05	0.47256	0.00024585	520.2587997612821	64.911	2.3979	64.911	64.483	66.881	0					261	86	6	0	0	0	0.25314	1	16257	16257		15.847	1.0089	1	29717000	+		42273	16004	24380	24381	51658	51658					-0.015499386850024166
SFLYSPTPQ	9	Unmodified	_SFLYSPTPQ_					0	0	0			REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2469482421875	2	520.258382	1038.50221	0.37887	0.00019711	0.12216	6.3554E-05	0.50103	0.00026066	520.2587950235188	64.807	2.6921	64.9	64.363	67.055	0.09288					283	98	6	0	0	0	0.23007	1	16195	16195		19.257	3.4098	1	30306000	+		42274	16004	24380	24381	51659	51659					-0.015499386850024166
SFLYSPTPQ	9	Unmodified	_SFLYSPTPQ_					0	0	0			REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2470703125	2	520.258382	1038.50221	0.22121	0.00011509	0.29639	0.0001542	0.5176	0.00026929	520.2588969968905	64.925	2.7578	64.914	64.362	67.12	-0.01133					242	100	5	0	0	0	0.25314	1	16235	16235		15.847	1.0089	1	30402000	+		42275	16004	24380	24381	51660	51660					-0.015499386850024166
SFMLLDQPF	9	Unmodified	_SFMLLDQPF_					0	0	0			REV__ENST00000366508.5_1_1:247061514-247061562:-|nuORF	REV__ENST00000366508.5_1_1:247061514-247061562:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2815551757812	2	549.270435	1096.52632	0.28533	0.00015672	-0.41778	-0.00022948	-0.13245	-7.2752E-05	549.2701484962043	60.349	0.81733	60.444	60.077	60.894	0.095093					49	29	2	0	0	0	0.24581	1	14879	14879		16.942	1.0951	1	1449000	+		42276	20293	24381	24382	51661	51661					-0.01808421522991921
SFMMVPYLI	9	Unmodified	_SFMMVPYLI_					0	0	0			REV__ENSG00000170255|ENST00000526914|MRGPRX1	REV__ENSG00000170255|ENST00000526914|MRGPRX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2901000976562	2	550.779582	1099.54461	0.77807	0.00042854	-0.31597	-0.00017403	0.4621	0.00025452	550.7794941729906	77.906	1.988	77.962	77.378	79.366	0.055412					103	74	2	0	0	0	0.2451	1	20311	20311		15.847	1.2655	1	614180	+		42277	17568	24382	24383	51662	51662					-0.0011800287263667997
SFMMVPYLI	9	Unmodified	_SFMMVPYLI_					0	0	0			REV__ENSG00000170255|ENST00000526914|MRGPRX1	REV__ENSG00000170255|ENST00000526914|MRGPRX1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	550.779582	1099.54461	0.79192	0.00043618	-1.0035	-0.00055269	-0.21154	-0.00011651	550.7790330701645	77.801	1.0663	77.801	77.444	78.511	0	-0.080218	-0.0002923	NaN	15.847	92	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	490440	+		42278	17568	24382	24383							-0.0011800287263667997
SFMQPKDQ	8	Unmodified	_SFMQPKDQ_					0	0	0		ENST00000420193.1_1_10:54064055-54073228:-|nuORF	ENST00000420193.1_1_10:54064055-54073228:-|nuORF	ENST00000420193.1_1_10:54064055-54073228:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.5799255371094	2	490.728935	979.443317	-0.038554	-1.892E-05	-2.0956	-0.0010284	-2.1341	-0.0010473	490.7277117340166	13.723	0.33845	13.657	13.55	13.889	-0.066068					14	11	2	0	0	0	0.32435	1	516	516		23.148	13.074	1	34459			42279	10358	24383	24384	51663	51663					-0.047227382509845484
SFPFPLSPLFL	11	Unmodified	_SFPFPLSPLFL_					0	0	0			REV__ENST00000314940.6_1_5:137089877-137089988:-|nuORF	REV__ENST00000314940.6_1_5:137089877-137089988:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3693237304688	2	632.85245	1263.69035	0.6562	0.00041528	-2.8842	-0.0018253	-2.228	-0.00141	632.8504184111015	84.674	0.32159	84.662	84.493	84.814	-0.01284					16	12	2	0	0	0	0.39234	1	22184	22184		12.241	0.60036	1	129610	+		42280	19927	24384	24385	51664	51664					0.0690491923942318
SFPFVILGN	9	Unmodified	_SFPFVILGN_					0	0	0		ENSG00000123595|ENST00000464506|RAB9A	ENSG00000123595|ENST00000464506|RAB9A	ENSG00000123595|ENST00000464506|RAB9A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2746276855469	2	497.273835	992.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.547	1	87.547	87.047	88.047	0								0	0	0	0.23367	1	23089	23089		11.64	3.047	1				42281	3116	24385	24386	51665	51665					0.03655259419917911
SFPISIWIHLH	11	Unmodified	_SFPISIWIHLH_					0	0	0			REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.236572265625	3	450.583674	1348.72919	0.22117	9.9656E-05	0.060187	2.7119E-05	0.28136	0.00012677	450.5837305716778	40.622	0.51097	40.722	40.479	40.99	0.099403					39	18	3	0	0	0	0.3322	1	8727	8727		4.7159	0.83959	1	308300	+		42282	22023	24386	24387	51666	51666					0.06877644593805599
SFPISIWIHLH	11	Unmodified	_SFPISIWIHLH_					0	0	0			REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	REV__ENST00000531655.1_1_11:4496080-4496773:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	450.583674	1348.72919	0.33645	0.0001516	-0.22711	-0.00010233	0.10934	4.9269E-05	450.58355711292666	40.601	0.58688	40.693	40.394	40.98	0.09267	-0.01413	-0.00014431	NaN	4.7159	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329970	+		42283	22023	24386	24387							0.06877644593805599
SFPKENLTV	9	Unmodified	_SFPKENLTV_					0	0	0			REV__nc|ENSG00000169604|Q9H6X2-4|ANTXR1	REV__nc|ENSG00000169604|Q9H6X2-4|ANTXR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7876586914062	2	517.779482	1033.54441	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.87	1	64.859	64.359	65.359	-0.011337								0	0	0	0.1027	1	16138	16138		45.7	11.298	1		+		42284	17524	24387	24388	51667	51667					0.028980367233543802
SFPPQPLTV	9	Unmodified	_SFPPQPLTV_					0	0	0			REV__ENST00000413427.6_1_3:170077427-170077517:+|nuORF	REV__ENST00000413427.6_1_3:170077427-170077517:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.8137512207031	2	493.271293	984.528032	0.67536	0.00033313	0.0475	2.3431E-05	0.72286	0.00035656	493.2712587169209	54.475	0.7858	54.475	54.188	54.974	0					66	28	3	0	0	0	0.20881	1	13052	13052		27.629	4.4804	1	2092600	+		42285	20792	24388	24389	51668	51668					0.03514955557284338
SFPPQPLTV	9	Unmodified	_SFPPQPLTV_					0	0	0			REV__ENST00000413427.6_1_3:170077427-170077517:+|nuORF	REV__ENST00000413427.6_1_3:170077427-170077517:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	493.271293	984.528032	0.64543	0.00031837	0.1465	7.2265E-05	0.79193	0.00039063	493.27122787817063	54.39	0.72247	54.453	54.168	54.89	0.063206	-0.067725	9.916E-05	NaN	27.629	63	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2292700	+		42286	20792	24388	24389							0.03514955557284338
SFPVPSPV	8	Unmodified	_SFPVPSPV_					0	0	0		ENST00000455205.5_3_X:153659819-153659909:+|nuORF	ENST00000455205.5_3_X:153659819-153659909:+|nuORF	ENST00000455205.5_3_X:153659819-153659909:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.23663330078125	2	415.226354	828.438155	0.31096	0.00012912	-0.9031	-0.00037499	-0.59214	-0.00024587	415.2258176313808	72.08	0.43459	72.052	71.765	72.2	-0.027275					27	15	2	0	0	0	0.3671	1	18362	18362		23.148	2.2772	1	257280			42287	10684	24389	24390	51669	51669					0.017073259487233372
SFPVPSPV	8	Unmodified	_SFPVPSPV_					0	0	0		ENST00000455205.5_3_X:153659819-153659909:+|nuORF	ENST00000455205.5_3_X:153659819-153659909:+|nuORF	ENST00000455205.5_3_X:153659819-153659909:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	415.226354	828.438155	0.039915	1.6574E-05	-0.43683	-0.00018138	-0.39691	-0.00016481	415.2260679136507	72.064	0.44212	72.064	71.773	72.215	0	0.0057803	0.00018329	NaN	23.148	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235400			42288	10684	24389	24390							0.017073259487233372
SFPVPSPV	8	Unmodified	_SFPVPSPV_					0	0	0		ENST00000455205.5_3_X:153659819-153659909:+|nuORF	ENST00000455205.5_3_X:153659819-153659909:+|nuORF	ENST00000455205.5_3_X:153659819-153659909:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	415.226354	828.438155	0.31096	0.00012912	-0.9031	-0.00037499	-0.59214	-0.00024587	415.2258176313808	72.08	0.43459	72.052	71.765	72.2	-0.027275	-0.0057803	-0.00020393	NaN	23.148	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257280			42289	10684	24389	24390							0.017073259487233372
SFQANHVSK	9	Unmodified	_SFQANHVSK_					0	0	0		nc|ENSG00000144152|Q53RD9-4|FBLN7;nc|ENSG00000144152|Q53RD9-2|FBLN7;ENSG00000144152|ENST00000331203|FBLN7;nc|ENSG00000144152|Q53RD9-3|FBLN7	nc|ENSG00000144152|Q53RD9-4|FBLN7	nc|ENSG00000144152|Q53RD9-4|FBLN7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.2483215332031	2	509.259248	1016.50394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.33	1	31.371	30.871	31.871	0.040991								0	0	0	0.19534	1	5837	5837		24.021	4.5816	1				42290	4569	24390	24391	51670	51670					-0.0036488487637598155
SFQEFVQI	8	Unmodified	_SFQEFVQI_					0	0	0		nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.25347900390625	2	499.2531	996.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.318	1	87.405	86.905	87.905	0.08709								0	0	0	0.36748	1	23012	23012		6.7232	0	1				42291	2870	24391	24392	51671	51671					-0.006739213394212129
SFQHWNRLF	9	Unmodified	_SFQHWNRLF_					0	0	0			REV__ENST00000488129.1_1_3:113676552-113677474:+|nuORF	REV__ENST00000488129.1_1_3:113676552-113677474:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.20947265625	3	412.208718	1233.60433	0.20344	8.386E-05	0.83197	0.00034295	1.0354	0.00042681	412.20940410977414	45.757	1.9324	45.757	44.771	46.703	0					140	70	4	0	0	0	0.32733	1	10192	10192		2.7352	0	1	644170	+		42292	18310	24392	24393	51672	51672					-0.003132278227212737
SFQWYLDNVF	10	Unmodified	_SFQWYLDNVF_					0	0	0		ENSG00000106648|ENST00000392800|GALNTL5	ENSG00000106648|ENST00000392800|GALNTL5	ENSG00000106648|ENST00000392800|GALNTL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.2087707519531	3	440.208273	1317.60299	0.33887	0.00014917	0.5813	0.00025589	0.92017	0.00040507	440.20854675919406	45.74	0.5263	45.805	45.516	46.043	0.065048					49	18	4	0	0	0	0.39145	1	10241	10241		5.0475	0.85802	1	863900			42293	2092	24393	24394	51673	51673					-0.04310906702153261
SFQWYLDNVF	10	Unmodified	_SFQWYLDNVF_					0	0	0		ENSG00000106648|ENST00000392800|GALNTL5	ENSG00000106648|ENST00000392800|GALNTL5	ENSG00000106648|ENST00000392800|GALNTL5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	440.208273	1317.60299	0.33887	0.00014917	0.5813	0.00025589	0.92017	0.00040507	440.20854675919406	45.74	0.5263	45.805	45.516	46.043	0.065048	-0.061065	-0.0002656	NaN	5.0475	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	863900			42294	2092	24393	24394							-0.04310906702153261
SFREKILVK	9	Unmodified	_SFREKILVK_					0	0	0		ENST00000495270.1_1_9:130699195-130699321:-|nuORF	ENST00000495270.1_1_9:130699195-130699321:-|nuORF	ENST00000495270.1_1_9:130699195-130699321:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.815185546875	2	560.347866	1118.68118	0.43662	0.00024466	-0.30316	-0.00016987	0.13346	7.4784E-05	560.3477032450838	36.966	0.37884	37.054	36.815	37.193	0.08741					23	13	2	0	0	0	0.25779	1	7500	7500		6.2058	0.9089	1	117410			42295	11217	24394	24395	51674	51674					0.1265857067376146
SFREKILVK	9	Unmodified	_SFREKILVK_					0	0	0		ENST00000495270.1_1_9:130699195-130699321:-|nuORF	ENST00000495270.1_1_9:130699195-130699321:-|nuORF	ENST00000495270.1_1_9:130699195-130699321:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.347866	1118.68118	0.61115	0.00034245	-0.3656	-0.00020486	0.24555	0.00013759	560.3476069783476	37.058	0.22229	37.058	36.985	37.207	0	0.0020501	-4.5937E-05	NaN	6.2058	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140240			42296	11217	24394	24395							0.1265857067376146
SFRFLLCYL	9	Unmodified	_SFRFLLCYL_					0	0	0			REV__ENST00000485112.1_1_2:122288082-122288148:-|nuORF	REV__ENST00000485112.1_1_2:122288082-122288148:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.3118896484375	2	581.309895	1160.60524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.773	1	24.742	24.242	25.242	-0.031408								0	0	0	0.21353	1	3850	3850		18.146	1.0335	1		+		42297	21541	24395	24396	51675	51675					0.03135850501962523
SFRKLHVL	8	Unmodified	_SFRKLHVL_					0	0	0			REV__ENSG00000138592|ENST00000307179|USP8	REV__ENSG00000138592|ENST00000307179|USP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.27923583984375	2	500.308544	998.602535	0.0042045	2.1036E-06	-2.3218	-0.0011616	-2.3176	-0.0011595	500.3072385727011	61.577	0.30611	61.568	61.477	61.783	-0.009346					14	10	2	0	0	0	0.34092	1	15179	15179		8.5933	0	1	136660	+		42298	15932	24396	24397	51676	51676					0.10317763159298465
SFRKLHVL	8	Unmodified	_SFRKLHVL_					0	0	0			REV__ENSG00000138592|ENST00000307179|USP8	REV__ENSG00000138592|ENST00000307179|USP8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	500.308544	998.602535	0.20801	0.00010407	-2.3725	-0.001187	-2.1645	-0.0010829	500.30770078421	61.603	0.19004	61.603	61.537	61.727	0	0.017342	-3.925E-05	NaN	8.5933	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117960	+		42299	15932	24396	24397							0.10317763159298465
SFRKSKSPF	9	Unmodified	_SFRKSKSPF_					0	0	0		ENSG00000132953|ENST00000255305|XPO4;ENST00000490513.1_1_13:21437227-21476877:-|nuORF;ENST00000465018.1_1_13:21442666-21476877:-|nuORF	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3345947265625	2	542.300916	1082.58728	-0.91	-0.00049349	0.77426	0.00041988	-0.13574	-7.3613E-05	542.3013673278778	34.934	0.3599	35.009	34.763	35.123	0.075306					22	12	2	0	0	0	0.25938	1	6883	6883		4.3292	0.73274	1	196850			42300	3681	24397	24398	51677	51677					0.04928851571457926
SFRMPIRGF	9	Unmodified	_SFRMPIRGF_					0	0	0			REV__ENSG00000168101|ENST00000304301|NUDT16L1	REV__ENSG00000168101|ENST00000304301|NUDT16L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3455810546875	2	555.797486	1109.58042	0.5879	0.00032675	-2.8759	-0.0015984	-2.288	-0.0012716	556.2975052195154	47.597	0.12986	47.64	47.561	47.691	0.043324					7	4	2	0	0	0	0.24913	1	10811	10811		12.532	9.9541	1	80154	+		42301	17440	24398	24399	51678	51678					0.03001215419226355
SFRWLTSL	8	Unmodified	_SFRWLTSL_					0	0	0			REV__ENST00000449473.2_1_1:101552540-101552798:+|nuORF	REV__ENST00000449473.2_1_1:101552540-101552798:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2634582519531	2	505.276909	1008.53927	0.18557	9.3762E-05	-0.60252	-0.00030444	-0.41696	-0.00021068	505.27648245515877	76.568	0.98058	76.621	76.423	77.403	0.053421					56	34	3	0	0	0	0.33245	1	19697	19697		13.508	13.508	1	131590	+		42302	21106	24399	24400	51679	51679					0.03533777651421133
SFSAWTLLF	9	Unmodified	_SFSAWTLLF_					0	0	0			REV__ENST00000515156.2_1_5:68927792-68932223:+|nuORF	REV__ENST00000515156.2_1_5:68927792-68932223:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2901611328125	2	536.279118	1070.54368	1.1018	0.00059088	-0.34054	-0.00018263	0.76127	0.00040825	536.2789737279113	56.273	0.65189	56.254	56.048	56.7	-0.019081					28	23	2	0	0	0	0.1669	1	13599	13599		28.487	0	1	980900	+		42303	21839	24400	24401	51680	51680					0.011232420743453986
SFSDSPSV	8	Unmodified	_SFSDSPSV_					0	0	0			REV__VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant	REV__VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5365295410156	2	413.184883	824.355213	0.31718	0.00013105	0.33646	0.00013902	0.65364	0.00027008	413.1851532117557	45.136	0.43038	45.211	45.016	45.446	0.07505					27	15	2	0	0	0	0.29855	1	10062	10062		24.674	0	1	169050	+		42304	18784	24401	24402	51681	51681					-0.0639903556993886
SFSDSPSV	8	Unmodified	_SFSDSPSV_					0	0	0			REV__VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant	REV__VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	413.184883	824.355213	0.14197	5.866E-05	0.57954	0.00023946	0.72151	0.00029812	413.1851855953787	45.329	0.31951	45.329	45.238	45.558	0	0.059157	8.4482E-05	NaN	24.674	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124540	+		42305	18784	24401	24402							-0.0639903556993886
SFSDVETHF	9	Unmodified	_SFSDVETHF_					0	0	0		nc|ENSG00000285253|Q6N043-3|ZNF280D;nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;ENST00000560121.1_1_15:56958875-56971015:-|nuORF;nc|ENSG00000285253|Q6N043-4|ZNF280D	nc|ENSG00000285253|Q6N043-3|ZNF280D	nc|ENSG00000285253|Q6N043-3|ZNF280D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.8107299804688	2	534.735271	1067.45599	0.67724	0.00036215	-0.44676	-0.0002389	0.23048	0.00012325	534.7353477869451	48.519	0.35249	48.566	48.366	48.718	0.047523					18	12	2	0	0	0	0.22596	1	11101	11101		15.847	3.3156	1	158970			42306	4091	24402	24403	51682	51682					-0.07504003587109764
SFSFFKEVWN	10	Unmodified	_SFSFFKEVWN_					0	0	0		ENST00000471948.5_1_2:263285-263645:-|nuORF	ENST00000471948.5_1_2:263285-263645:-|nuORF	ENST00000471948.5_1_2:263285-263645:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8880615234375	3	430.876634	1289.60807	-0.081059	-3.4926E-05	-1.1995	-0.00051685	-1.2806	-0.00055178	431.2103272463337	24.727	0.59659	24.671	24.376	24.972	-0.055931					43	20	3	0	0	0	0.39935	1	3773	3773		1.7423	0	1	112500			42307	10884	24403	24404	51683	51683					-0.025146028395283793
SFSFFLFF	8	Unmodified	_SFSFFLFF_					0	0	0		ENST00000474051.1_1_14:68352547-68354002:+|nuORF	ENST00000474051.1_1_14:68352547-68354002:+|nuORF	ENST00000474051.1_1_14:68352547-68354002:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.7821044921875	2	521.257654	1040.50076	0.50569	0.0002636	-0.9324	-0.00048602	-0.4267	-0.00022242	521.2568103809435	42.163	0.29002	42.254	42.095	42.385	0.091362					15	9	3	0	0	0	0.32778	1	9143	9143		20.871	0.41758	1	247900			42308	10914	24404	24405	51684	51684					-0.017875279831059743
SFSFFLFF	8	Unmodified	_SFSFFLFF_					0	0	0		ENST00000474051.1_1_14:68352547-68354002:+|nuORF	ENST00000474051.1_1_14:68352547-68354002:+|nuORF	ENST00000474051.1_1_14:68352547-68354002:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.257654	1040.50076	0.11699	6.0983E-05	-0.33047	-0.00017226	-0.21348	-0.00011128	521.2578329423902	42.463	0.27082	42.463	42.407	42.678	0	0.1046	0.00030708	NaN	20.871	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165610			42309	10914	24404	24405							-0.017875279831059743
SFSFYATQV	9	Unmodified	_SFSFYATQV_					0	0	0			REV__ENST00000361479.9_1_13:20246111-20246267:+|nuORF	REV__ENST00000361479.9_1_13:20246111-20246267:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.26953125	2	525.250557	1048.48656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.646	1	60.646	60.146	61.146	0								0	0	0	0.22377	1	14846	14846		14.838	0.25658	1		+		42310	20281	24405	24406	51685	51685					-0.03574225202078196
SFSGVRKLV	9	Unmodified	_SFSGVRKLV_					0	0	0		ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	ENSG00000154114|ENST00000683345|TBCEL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7878723144531	2	496.798009	991.581465	0.84081	0.00041771	-0.065795	-3.2687E-05	0.77501	0.00038502	496.79818803201664	33.651	0.55357	33.717	33.458	34.012	0.06636					41	19	3	0	0	0	0.27532	1	6630	6630		12.532	0	1	330800			42311	5104	24406	24407	51686	51686					0.08533753059805349
SFSIAHFLL	9	Unmodified	_SFSIAHFLL_					0	0	0			REV__chr6:132684505-132686599|239|12.18|0.61|4.32|-|2|TE_info:HAL1,HAL1_dup9460,L1,LINE,donor,+,132686599,132687118|VNN1,None|6	REV__chr6:132684505-132686599|239|12.18|0.61|4.32|-|2|TE_info:HAL1,HAL1_dup9460,L1,LINE,donor,+,132686599,132687118|VNN1,None|6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.2750854492188	2	517.78711	1033.55967	0.32199	0.00016672	1.2064	0.00062465	1.5284	0.00079137	518.2885065576172	24.499	0.11056	24.427	24.387	24.498	-0.072559					6	3	2	0	0	0	0.25526	1	3791	3791		7.9102	0	1	34222	+		42312	13210	24407	24408	51687	51687					0.04422948311230357
SFSITSIAFCL	11	Unmodified	_SFSITSIAFCL_					0	0	0			REV__ENSG00000167972|ENST00000301732|ABCA3	REV__ENSG00000167972|ENST00000301732|ABCA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8004760742188	2	594.8021	1187.58965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.166	1	79.166	78.666	79.666	0								0	0	0	0.33176	1	20517	20517		12.241	0.74595	1		+		42313	17425	24408	24409	51688	51688					0.003355191942773672
SFSKKRRH	8	Unmodified	_SFSKKRRH_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7528686523438	2	523.304324	1044.5941	0.68188	0.00035683	1.7049	0.00089217	2.3868	0.001249	523.3051285453994	56.909	0.55711	56.89	56.7	57.257	-0.019081					26	19	2	0	0	0	0.34218	1	13684	13684		5.2307	0	1	248100			42314	4265	24409	24410	51689	51689					0.0735820924271593
SFSLLQSQF	9	Unmodified	_SFSLLQSQF_					0	0	0			REV__ENSG00000156395|ENST00000369701|SORCS3	REV__ENSG00000156395|ENST00000369701|SORCS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7615356445312	2	528.771657	1055.52876	0.5108	0.0002701	-0.31323	-0.00016563	0.19757	0.00010447	528.7715341757814	42.27	0.78354	42.361	42.095	42.879	0.091362					58	27	3	0	0	0	0.17787	1	9146	9146		26.884	0	1	866110	+		42315	16744	24410	24411	51690	51690					0.00321750206330762
SFSLLTRRL	9	Unmodified	_SFSLLTRRL_					0	0	0			REV__ENST00000252115.9_1_22:42988032-42991559:-|nuORF	REV__ENST00000252115.9_1_22:42988032-42991559:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.7865600585938	2	546.82984	1091.64513	0.29894	0.00016347	0.12451	6.8083E-05	0.42344	0.00023155	546.829720457391	18.375	0.68759	18.375	18.127	18.814	0					48	23	3	0	0	0	0.21389	1	1909	1909		25.399	0	1	183310	+		42316	19529	24411	24412	51691	51691					0.10297113496881138
SFSLWHQRQ	9	Unmodified	_SFSLWHQRQ_					0	0	0		ENST00000557163.1_1_14:61746812-61748042:-|nuORF;ENSG00000182107|ENST00000555868|TMEM30B	ENST00000557163.1_1_14:61746812-61748042:-|nuORF	ENST00000557163.1_1_14:61746812-61748042:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.80078125	2	594.799072	1187.58359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.189	1	79.25	78.75	79.75	0.061417								0	0	0	0.2362	1	20512	20512		10.824	1.4408	1				42317	7269	24412	24413	51692	51692					-0.0026981820237779175
SFSLYGSATF	10	Unmodified	_SFSLYGSATF_					0	0	0			REV__ENSG00000100427|ENST00000311597|MLC1	REV__ENSG00000100427|ENST00000311597|MLC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3306274414062	2	540.25584	1078.49713	0.63458	0.00034284	0.66771	0.00036073	1.3023	0.00070357	540.2560998412723	79.673	1.0411	79.644	79.305	80.346	-0.028931					90	38	4	0	0	0	0.23848	1	20654	20654		37.974	0	1	1039000	+		42318	14197	24413	24414	51693	51693					-0.03898242547643349
SFSPKISFF	9	Unmodified	_SFSPKISFF_					0	0	0		MLT1O_dup3857|chr14:57487880-57488236:+|1.4060546316911124|0.4929356967488846|1.51|533.0|17|2|anti-sense	MLT1O_dup3857|chr14:57487880-57488236:+|1.4060546316911124|0.4929356967488846|1.51|533.0|17|2|anti-sense	MLT1O_dup3857|chr14:57487880-57488236:+|1.4060546316911124|0.4929356967488846|1.51|533.0|17|2|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2783203125	2	530.279118	1058.54368	0.5959	0.00031599	-0.64112	-0.00033998	-0.04523	-2.3984E-05	530.2789075596693	89.841	1.5456	89.841	89.181	90.727	-0.00080872					194	115	3	0	0	0	0.16283	1	23761	23761		29.082	0	1	209340			42319	12544	24414	24415	51694	51694					0.01675242074338712
SFSPKTYSF	9	Unmodified	_SFSPKTYSF_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17113817-17167232:-|nuORF	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.73291015625	2	532.258382	1062.50221	0.75877	0.00040386	-0.87442	-0.00046542	-0.11565	-6.1556E-05	532.2579151028854	47.898	0.89079	47.898	47.468	48.358	0					66	31	3	0	0	0	0.12329	1	10891	10891		41.956	16.556	1	3535100			42320	441	24415	24416	51695	51695					-0.026539386850117808
SFSPKTYSF	9	Unmodified	_SFSPKTYSF_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17113817-17167232:-|nuORF	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7327270507812	2	532.258382	1062.50221	0.72077	0.00038364	-0.61508	-0.00032738	0.10569	5.6254E-05	532.2578839269011	47.821	0.91289	47.869	47.428	48.341	0.047523					69	33	3	0	0	0	0.1558	1	10877	10877		34.932	9.5328	1	2846200			42321	441	24415	24416	51696	51696					-0.026539386850117808
SFSPKTYSF	9	Unmodified	_SFSPKTYSF_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17113817-17167232:-|nuORF	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7325439453125	2	532.258382	1062.50221	0.70504	0.00037526	-0.54373	-0.00028941	0.1613	8.5855E-05	532.258032295095	47.826	0.83868	47.87	47.43	48.269	0.04332					69	31	3	0	0	0	0.1558	1	10866	10866		41.956	16.556	1	4170000			42322	441	24415	24416	51697	51697					-0.026539386850117808
SFSPLPRRQH	10	Unmodified	_SFSPLPRRQH_					0	0	0			REV__CLCNKB|p.P342Hfs*109|1|0.34|ENSG00000184908|chr1:16050571-16050572|-/A|frameshift_variant	REV__CLCNKB|p.P342Hfs*109|1|0.34|ENSG00000184908|chr1:16050571-16050572|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.2795104980469	3	408.891389	1223.65234	-0.30825	-0.00012604	0.2233	9.1305E-05	-0.084951	-3.4736E-05	408.8914591492402	13.972	0.58843	13.868	13.685	14.273	-0.10466					47	20	4	0	0	0	0.32165	1	675	675		0.69767	0.07084	1	189350	+		42323	13229	24416	24417	51698	51698					0.049458460973028195
SFSPQNNTL	9	Unmodified	_SFSPQNNTL_					0	0	0		nc|ENSG00000188175|A8MVW5-2|HEPACAM2;ENSG00000188175|ENST00000394468|HEPACAM2;nc|ENSG00000188175|A8MVW5-3|HEPACAM2	nc|ENSG00000188175|A8MVW5-2|HEPACAM2	nc|ENSG00000188175|A8MVW5-2|HEPACAM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.78314208984375	2	504.243264	1006.47197	0.36479	0.00018394	0.50033	0.00025229	0.86511	0.00043623	504.24383999324624	71.295	0.45146	71.295	71.098	71.55	0					18	15	2	0	0	0	0.20167	1	18113	18113		29.082	1.4528	1	337520			42324	7734	24417	24418	51699	51699					-0.031002973501813358
SFSPRLQL	8	Unmodified	_SFSPRLQL_					0	0	0			REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	REV__nc|ENSG00000058600|Q9NVU0-2|POLR3E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.779296875	2	474.269084	946.523616	0.25968	0.00012316	0.13661	6.479E-05	0.39629	0.00018795	474.2693839144186	49.162	0.43963	49.162	48.995	49.434	0					29	15	2	0	0	0	0.33993	1	11273	11273		16.942	0	1	223800	+		42325	13608	24418	24419	51700	51700					0.048214911343848144
SFSRLTALTL	10	Unmodified	_SFSRLTALTL_					0	0	0		ENSG00000173275|ENST00000339249|ZNF449	ENSG00000173275|ENST00000339249|ZNF449	ENSG00000173275|ENST00000339249|ZNF449	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3031616210938	2	554.821681	1107.62881	0.46376	0.0002573	0.20998	0.0001165	0.67374	0.0003738	554.8216254836341	54.088	0.34027	54.152	53.987	54.327	0.063202					16	12	2	0	0	0	0.31039	1	12781	12781		13.042	2.9685	1	219740			42326	6713	24419	24420	51701	51701					0.0792998754011478
SFSRTLDV	8	Unmodified	_SFSRTLDV_					0	0	0			REV__nc|ENSG00000100938|Q9P2T1-2|GMPR2	REV__nc|ENSG00000100938|Q9P2T1-2|GMPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.74298095703125	2	462.742899	923.471246	-0.33234	-0.00015379	0.93394	0.00043217	0.6016	0.00027839	462.7430805410224	39.47	0.64454	39.47	39.242	39.886	0					49	23	4	0	0	0	0.20663	1	8330	8330		41.84	0	1	496100	+		42327	22914	24420	24421	51702	51702					0.006449080007541852
SFSRTLDV	8	Unmodified	_SFSRTLDV_					0	0	0			REV__nc|ENSG00000100938|Q9P2T1-2|GMPR2	REV__nc|ENSG00000100938|Q9P2T1-2|GMPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.74298095703125	2	462.742899	923.471246	0.21532	9.9636E-05	0.045061	2.0852E-05	0.26038	0.00012049	462.74284823739794	39.368	0.50002	39.467	39.236	39.736	0.099403					37	17	3	0	0	0	0.26862	1	8307	8307		34.402	0	1	559510	+		42328	22914	24420	24421	51703	51703					0.006449080007541852
SFSSPSHDL	9	Unmodified	_SFSSPSHDL_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.72149658203125	2	488.722164	975.429775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.664	1	88.754	88.254	89.254	0.089195								0	0	0	0.24715	1	23423	23423		7.2892	0	1				42329	4431	24421	24422	51704	51704					-0.0589227275858093
SFSSSRQMTS	10	Unmodified	_SFSSSRQMTS_					0	0	0			REV__nc|ENSG00000189319|Q14153-2|FAM53B	REV__nc|ENSG00000189319|Q14153-2|FAM53B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2510375976562	2	559.250763	1116.48697	0.6825	0.00038169	-0.024575	-1.3744E-05	0.65793	0.00036795	559.2506965153697	36.446	1.1965	36.532	36.244	37.441	0.086246					117	42	5	0	0	0	0.11081	4	7404	7357;7404;7448;7503		45.7	38.176	1	4182800	+		42330	18604	24422	24423	51705;51706;51707;51708	51706					-0.0666117354448943
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2694091796875	2	541.269281	1080.52401	0.39011	0.00021115	-0.46404	-0.00025117	-0.073927	-4.0015E-05	541.2690889587731	30.926	0.93902	30.926	30.587	31.526	0					80	33	3	0	0	0	0.0041491	1	5676	5676		93.166	62.529	1	1255000			42331	3836	24423	24424	51709	51709					-0.01303133936426093
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2692260742188	2	541.269281	1080.52401	0.33338	0.00018045	-0.26452	-0.00014318	0.068857	3.727E-05	541.2691572169343	30.946	0.83516	30.974	30.693	31.528	0.027946					69	29	3	0	0	0	0.0028542	1	5687	5687		103.42	67.292	1	1240800			42332	3836	24423	24424	51710	51710					-0.01303133936426093
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2684936523438	2	541.269281	1080.52401	0.42127	0.00022802	-0.51619	-0.0002794	-0.094916	-5.1375E-05	541.2690533376272	30.846	0.99094	30.874	30.555	31.545	0.027159					86	35	3	0	0	0	0.003673	1	5664	5664		96.936	60.809	1	1403600			42333	3836	24423	24424	51711	51711					-0.01303133936426093
SFSVFDGSEF	10	Unmodified	_SFSVFDGSEF_					0	0	0			REV__nc|ENSG00000130985|P22314-2|UBA1	REV__nc|ENSG00000130985|P22314-2|UBA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.251220703125	2	561.242929	1120.47131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.131	1	44.215	43.715	44.715	0.083996								0	0	0	0.33945	1	9745	9745		19.257	5.3509	1		+		42334	15493	24424	24425	51712	51712					-0.08411136789891316
SFSVKKSLV	9	Unmodified	_SFSVKKSLV_					0	0	0			REV__ENST00000438412.5_1_6:30259721-30259922:-|nuORF	REV__ENST00000438412.5_1_6:30259721-30259922:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7878112792969	2	497.800217	993.585882	0.12412	6.1786E-05	-0.68793	-0.00034245	-0.56382	-0.00028067	497.7998637196289	34.187	0.50343	34.253	34.047	34.55	0.066704					29	17	2	0	0	0	0.27532	1	6675	6675		12.532	1.7076	1	243640	+		42335	21028	24425	24426	51713	51713					0.08883217482718919
SFSVTPVNIF	10	Unmodified	_SFSVTPVNIF_					0	0	0			REV__nc|ENSG00000172828|Q6UWW8-2|CES3	REV__nc|ENSG00000172828|Q6UWW8-2|CES3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8132934570312	2	555.795132	1109.57571	0.36127	0.00020079	2.1406	0.0011898	2.5019	0.0013906	555.7959964533622	53.603	0.69191	53.594	53.427	54.119	-0.0096054					40	25	2	0	0	0	0.20278	1	12764	12764		32.305	9.6474	1	390930	+		42336	17737	24426	24427	51714	51714					0.025306097574684827
SFTAKSSL	8	Unmodified	_SFTAKSSL_					0	0	0		ENSG00000112365|ENST00000230122|ZBTB24	ENSG00000112365|ENST00000230122|ZBTB24	ENSG00000112365|ENST00000230122|ZBTB24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.2349548339844	2	420.726718	839.438883	-0.10557	-4.4416E-05	0.1505	6.3317E-05	0.044925	1.8901E-05	420.7269625593491	43.933	0.43322	43.933	43.656	44.09	0					16	15	2	0	0	0	0.34046	1	9632	9632		5.2307	0.47466	1	86113			42337	2431	24427	24428	51715	51715					0.01274120597770434
SFTKDSLDISL	11	Unmodified	_SFTKDSLDISL_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.215087890625	3	409.215204	1224.62378	-0.22229	-9.0964E-05	0.93823	0.00038394	0.71595	0.00029298	409.21574456492715	28.381	1.2995	28.382	28.078	29.377	0.0004673					121	43	4	0	0	0	0.36943	1	5039	5039		12.228	0	1	2118200	+		42338	15882	24428	24429	51716	51716					0.0204563888685243
SFTPGPVPF	9	Unmodified	_SFTPGPVPF_					0	0	0			REV__ENST00000368073.7_1_1:160187265-160187343:-|nuORF	REV__ENST00000368073.7_1_1:160187265-160187343:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7442932128906	2	474.744911	947.475269	0.14723	6.9897E-05	-1.7621	-0.00083654	-1.6149	-0.00076664	474.74402214339926	75.276	0.63707	75.276	75.012	75.649	0					50	22	3	0	0	0	0.11517	3	19304	19304;19389;19405		36.044	7.5574	1	985380	+		42339	20328	24429	24430	51717;51718;51719	51717					-0.0005700250553672959
SFTPLHSL	8	Unmodified	_SFTPLHSL_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7704162597656	2	451.242535	900.470518	0.4972	0.00022436	-0.62627	-0.0002826	-0.12907	-5.8241E-05	451.2420919685817	50.05	0.63621	50.095	49.825	50.461	0.044891					41	23	3	0	0	0	0.31934	1	11666	11666		12.532	0	1	245560	+		42340	14730	24430	24431	51720	51720					0.016301133517231392
SFTQGCEKYPK	11	Unmodified	_SFTQGCEKYPK_					0	0	0			REV__ENSG00000188321|ENST00000603380|ZNF559	REV__ENSG00000188321|ENST00000603380|ZNF559	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.305908203125	2	644.305538	1286.59652	0.788	0.00050771	-0.85897	-0.00055344	-0.070972	-4.5728E-05	644.3050890797504	45.736	0.41597	45.736	45.558	45.974	0					32	14	3	0	0	0	0.23019	1	10253	10253		28.495	0.86571	1	334520	+		42341	18549	24431	24432	51721	51721					-0.03531167925166301
SFTQGCEKYPK	11	Unmodified	_SFTQGCEKYPK_					0	0	0			REV__ENSG00000188321|ENST00000603380|ZNF559	REV__ENSG00000188321|ENST00000603380|ZNF559	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	644.3056640625	2	644.305538	1286.59652	0.54098	0.00034856	-0.29984	-0.00019319	0.24114	0.00015537	644.3052567181053	45.416	0.45036	45.481	45.302	45.753	0.065048					34	16	3	0	0	0	0.28258	1	10152	10152		23.79	2.2528	1	366350	+		42342	18549	24431	24432	51722	51722					-0.03531167925166301
SFTQGCEKYPK	11	Unmodified	_SFTQGCEKYPK_					0	0	0			REV__ENSG00000188321|ENST00000603380|ZNF559	REV__ENSG00000188321|ENST00000603380|ZNF559	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	644.305538	1286.59652	0.788	0.00050771	-0.85897	-0.00055344	-0.070972	-4.5728E-05	644.3050890797504	45.736	0.41597	45.736	45.558	45.974	0	0.17716	-0.00051707	NaN	28.495	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334520	+		42343	18549	24431	24432							-0.03531167925166301
SFTQGCEKYPK	11	Unmodified	_SFTQGCEKYPK_					0	0	0			REV__ENSG00000188321|ENST00000603380|ZNF559	REV__ENSG00000188321|ENST00000603380|ZNF559	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	644.305538	1286.59652	0.54098	0.00034856	-0.29984	-0.00019319	0.24114	0.00015537	644.3052567181053	45.416	0.45036	45.481	45.302	45.753	0.065048	-0.078579	0.00020343	NaN	28.495	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366350	+		42344	18549	24431	24432							-0.03531167925166301
SFTQIQATF	9	Unmodified	_SFTQIQATF_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.7638549804688	2	521.763832	1041.51311	0.68185	0.00035576	-0.90453	-0.00047195	-0.22269	-0.00011619	521.7632520448357	64.405	0.62405	64.405	63.997	64.621	0					35	22	2	0	0	0	0.026579	1	16032	16032		61.602	25.475	1	462210			42345	644	24432	24433	51723	51723					-0.00598536310712916
SFTQIQATF	9	Unmodified	_SFTQIQATF_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.7638549804688	2	521.763832	1041.51311	0.56213	0.0002933	-0.64452	-0.00033629	-0.082392	-4.2989E-05	521.7635932616614	64.317	0.54397	64.41	64.116	64.66	0.09288					40	17	3	0	0	0	0.0024096	1	15992	15992		106.94	45.583	1	485610			42346	644	24432	24433	51724	51724					-0.00598536310712916
SFTQIQATF	9	Unmodified	_SFTQIQATF_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.7637329101562	2	521.763832	1041.51311	0.59961	0.00031286	-0.51895	-0.00027077	0.080661	4.2086E-05	521.7635239671174	64.451	0.48495	64.441	64.177	64.662	-0.0095367					30	17	2	0	0	0	0.015924	1	16036	16036		70.332	18.064	1	452000			42347	644	24432	24433	51725	51725					-0.00598536310712916
SFTQKSHLF	9	Unmodified	_SFTQKSHLF_					0	0	0		ENSG00000105497|ENST00000262259|ZNF175	ENSG00000105497|ENST00000262259|ZNF175	ENSG00000105497|ENST00000262259|ZNF175	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7849731445312	2	547.785099	1093.55564	-0.82646	-0.00045272	0.45252	0.00024788	-0.37394	-0.00020484	547.7854296360717	35.017	0.6642	35.017	34.775	35.439	0					46	23	3	0	0	0	0.05341	1	7008	7008		51.63	32.373	1	377790			42348	1987	24433	24434	51726	51726					0.012608588174998658
SFTQKSHLF	9	Unmodified	_SFTQKSHLF_					0	0	0		ENSG00000105497|ENST00000262259|ZNF175	ENSG00000105497|ENST00000262259|ZNF175	ENSG00000105497|ENST00000262259|ZNF175	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7850341796875	2	547.785099	1093.55564	-0.76993	-0.00042176	0.41308	0.00022628	-0.35685	-0.00019548	547.7856720955666	34.955	0.55822	35.03	34.788	35.346	0.075306					46	19	3	0	0	0	0.003317	1	6970	6970		99.755	55.348	1	418580			42349	1987	24433	24434	51727	51727					0.012608588174998658
SFTQKSHLF	9	Unmodified	_SFTQKSHLF_					0	0	0		ENSG00000105497|ENST00000262259|ZNF175	ENSG00000105497|ENST00000262259|ZNF175	ENSG00000105497|ENST00000262259|ZNF175	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7848510742188	2	547.785099	1093.55564	-0.49049	-0.00026868	0.52107	0.00028543	0.030575	1.6748E-05	547.7855457256131	34.892	0.57885	34.969	34.704	35.283	0.077377					49	20	3	0	0	0	0.0076724	1	6952	6952		96.936	54.841	1	353510			42350	1987	24433	24434	51728	51728					0.012608588174998658
SFTSSGHSLT	10	Unmodified	_SFTSSGHSLT_					0	0	0			REV__ENSG00000151655|ENST00000358415|ITIH2	REV__ENSG00000151655|ENST00000358415|ITIH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2816162109375	2	512.240721	1022.46689	0.2079	0.0001065	-1.5427	-0.00079023	-1.3348	-0.00068373	512.2398284998596	76.333	0.64063	76.333	76.141	76.782	0					36	22	2	0	0	0	0.31358	1	19635	19635		1.1933	0.50296	1	341930	+		42351	16548	24434	24435	51729	51729					-0.04344601212812904
SFTVVFQPF	9	Unmodified	_SFTVVFQPF_					0	0	0		nc|ENSG00000163803|Q6P1J6-4|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.279052734375	2	536.279118	1070.54368	0.31076	0.00016665	-2.0286	-0.0010879	-1.7178	-0.00092122	536.278611376595	75.718	1.6753	75.771	74.612	76.288	0.052361					193	60	5	0	0	0	0.079066	1	19522	19522		42.095	5.9675	1	42413000			42352	5734	24435	24436	51730	51730					0.011232420743453986
SFTVVFQPF	9	Unmodified	_SFTVVFQPF_					0	0	0		nc|ENSG00000163803|Q6P1J6-4|PLB1;nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	nc|ENSG00000163803|Q6P1J6-4|PLB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.280029296875	2	536.279118	1070.54368	0.48596	0.00026061	-1.974	-0.0010586	-1.4881	-0.00079802	536.278513275011	75.83	2.2343	75.799	74.726	76.96	-0.031487					260	82	5	0	0	0	0.037693	1	19580	19580		57.471	11.45	1	48523000			42353	5734	24435	24436	51731	51731					0.011232420743453986
SFTVVLIGLL	10	Unmodified	_SFTVVLIGLL_					0	0	0			REV__ENST00000481822.1_1_1:155223346-155224854:-|nuORF	REV__ENST00000481822.1_1_1:155223346-155224854:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3056030273438	2	531.333893	1060.65323	0.53621	0.0002849	-0.01395	-7.4122E-06	0.52226	0.00027749	531.3341887206631	70.542	0.48076	70.518	70.185	70.666	-0.024864					20	16	2	0	0	0	0.31691	1	17807	17807		9.3831	0	1	177480	+		42354	16916	24436	24437	51732	51732					0.12533247693681915
SFTVYFDVVE	10	Unmodified	_SFTVYFDVVE_					0	0	0		ENSG00000124215|ENST00000348616|CDH26;nc|ENSG00000124215|Q8IXH8-1|CDH26	ENSG00000124215|ENST00000348616|CDH26	ENSG00000124215|ENST00000348616|CDH26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.806884765625	2	603.289879	1204.56521	0.28571	0.00017237	-3.498	-0.0021103	-3.2123	-0.001938	603.2878290122459	73.718	0.21425	73.687	73.528	73.742	-0.030663					11	7	2	0	0	0	0.31358	1	18816	18816		13.906	3.0821	1	47392			42355	3144	24437	24438	51733	51733					-0.028894176876292477
SFTYNGPVL	9	Unmodified	_SFTYNGPVL_					0	0	0			REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF	REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2290954589844	2	499.2531	996.491647	0.24611	0.00012287	0.55856	0.00027886	0.80467	0.00040173	499.7551706997152	69.588	0.61336	69.566	69.324	69.937	-0.022087					39	22	3	0	0	0	0.23784	1	17569	17569		13.906	0	1	231820	+		42356	16134	24438	24439	51734	51734					-0.006739213394212129
SFVEEVQRI	9	Unmodified	_SFVEEVQRI_					0	0	0			REV__ENSG00000175229|ENST00000312006|GAL3ST3	REV__ENSG00000175229|ENST00000312006|GAL3ST3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8138427734375	2	553.795663	1105.57677	0.31972	0.00017706	0.00933	5.1669E-06	0.32905	0.00018222	553.7957529840018	32.474	0.485	32.528	32.306	32.791	0.054375					49	17	4	0	0	0	0.25314	1	6233	6233		15.847	1.9411	1	256410	+		42357	17882	24439	24440	51735	51735					0.028208241263882883
SFVERIELN	9	Unmodified	_SFVERIELN_					0	0	0			REV__ENST00000472135.2_1_X:83695455-83724556:-|nuORF	REV__ENST00000472135.2_1_X:83695455-83724556:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.785400390625	2	553.795663	1105.57677	0.62272	0.00034486	-0.23582	-0.0001306	0.3869	0.00021426	553.7955557877825	32.407	0.47097	32.462	32.233	32.704	0.055309					35	16	3	0	0	0	0.28128	1	6212	6212		11.64	0.81637	1	243120	+		42358	17220	24440	24441	51736	51736					0.028208241263882883
SFVGSVSIMAF	11	Unmodified	_SFVGSVSIMAF_					0	0	0			REV__nc|ENSG00000148110|Q5SR56-2|MFSD14B	REV__nc|ENSG00000148110|Q5SR56-2|MFSD14B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.281494140625	2	572.788992	1143.56343	0.51988	0.00029778	3.4937	0.0020012	4.0136	0.0022989	572.7914305702135	78.733	0.15878	78.733	78.669	78.828	0					7	5	2	0	0	0	0.32996	1	20366	20366		8.1555	1.4324	1	42388	+		42359	16413	24441	24442	51737	51737					-0.0026074997722389526
SFVHGRPQ	8	Unmodified	_SFVHGRPQ_					0	0	0		nc|ENSG00000103995|O94986-3|CEP152;ENSG00000103995|ENST00000380950|CEP152	nc|ENSG00000103995|O94986-3|CEP152	nc|ENSG00000103995|O94986-3|CEP152	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7823791503906	2	464.243401	926.472249	0.11054	5.1319E-05	3.0133	0.0013989	3.1239	0.0014502	464.2447893142939	31.143	0.73526	31.184	30.824	31.559	0.040989					39	26	2	0	0	0	0.34131	1	5889	5889		12.532	3.9383	1	165720			42360	1860	24442	24443	51738	51738					0.0060716716033084595
SFVQWDKF	8	Unmodified	_SFVQWDKF_					0	0	0			REV__ENSG00000173212|ENST00000369500|MAB21L3	REV__ENSG00000173212|ENST00000369500|MAB21L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3297119140625	2	528.761092	1055.50763	0.5321	0.00028135	-4.1183	-0.0021776	-3.5862	-0.0018963	528.7592056027976	31.9	0.28538	31.942	31.709	31.994	0.042364					11	9	2	0	0	0	0.28088	1	6009	6009		39.957	5.8549	1	396490	+		42361	17769	24443	24444	51739	51739					-0.017902151025282365
SFVRPLHS	8	Unmodified	_SFVRPLHS_					0	0	0			REV__ENST00000486986.6_1_1:151752280-151755498:-|nuORF	REV__ENST00000486986.6_1_1:151752280-151755498:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2865905761719	2	471.761426	941.5083	-0.019767	-9.3254E-06	0.38297	0.00018067	0.3632	0.00017134	471.76046020907444	73.427	0.49666	73.427	73.081	73.578	0					22	17	2	0	0	0	0.33245	1	18689	18689		19.439	4.8573	1	63576	+		42362	21558	24444	24445	51740	51740					0.03520624337170375
SFVRRVRF	8	Unmodified	_SFVRRVRF_					0	0	0			REV__ENST00000492316.5_1_6:30585621-30587787:+|nuORF	REV__ENST00000492316.5_1_6:30585621-30587787:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2529296875	2	533.817067	1065.61958	0.29861	0.0001594	-0.63546	-0.00033922	-0.33685	-0.00017981	533.8166575380337	47.217	0.29281	47.27	47.168	47.461	0.052574					18	10	2	0	0	0	0.34353	1	10699	10699		0.52476	0	1	256920	+		42363	21623	24445	24446	51741	51741					0.08939683765106565
SFVTSAGSLI	10	Unmodified	_SFVTSAGSLI_					0	0	0			REV__ENSG00000198246|ENST00000373189|SLC29A3	REV__ENSG00000198246|ENST00000373189|SLC29A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.2845764160156	2	491.266207	980.517862	0.33779	0.00016595	0.11959	5.875E-05	0.45738	0.0002247	491.2662554972675	49.039	0.30464	49.084	48.961	49.266	0.044891					15	10	2	0	0	0	0.27337	1	11261	11261		29.082	9.6426	1	323570	+		42364	18812	24446	24447	51742	51742					0.026823478320466165
SFVTSAGSLI	10	Unmodified	_SFVTSAGSLI_					0	0	0			REV__ENSG00000198246|ENST00000373189|SLC29A3	REV__ENSG00000198246|ENST00000373189|SLC29A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2845458984375	2	491.266207	980.517862	0.16486	8.0989E-05	0.90035	0.00044231	1.0652	0.0005233	491.2667056678219	49.011	0.32743	49.043	48.852	49.18	0.032043					13	11	2	0	0	0	0.27337	1	11250	11250		22.736	9.2284	1	146060	+		42365	18812	24446	24447	51743	51743					0.026823478320466165
SFVVKQEF	8	Unmodified	_SFVVKQEF_					0	0	0			REV__ENSG00000275023|ENST00000621332|MLLT6	REV__ENSG00000275023|ENST00000621332|MLLT6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.31048583984375	2	492.263468	982.512382	0.7523	0.00037033	-0.41334	-0.00020347	0.33896	0.00016686	492.26311393858987	48.213	0.72444	48.26	47.994	48.718	0.047523					45	26	2	0	0	0	0.31302	1	11112	11112		29.082	0	1	827060	+		42366	19328	24447	24448	51744	51744					0.02042669040235978
SFVYNHYLF	9	Unmodified	_SFVYNHYLF_					0	0	0		ENSG00000197217|ENST00000358689|ENTPD4;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000197217|ENST00000358689|ENTPD4;ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000197217|ENST00000358689|ENTPD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.2869262695312	2	595.287474	1188.5604	0.27221	0.00016205	0.15514	9.2354E-05	0.42736	0.0002544	595.2871005096958	65.326	0.44547	65.326	65.1	65.545	0					38	15	3	0	0	0	0.063853	1	16290	16290		47.749	27.334	1	480130			42367	7944;8026	24448	24449	51745	51745					-0.02634257039721888
SFVYNHYLF	9	Unmodified	_SFVYNHYLF_					0	0	0		ENSG00000197217|ENST00000358689|ENTPD4;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000197217|ENST00000358689|ENTPD4;ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000197217|ENST00000358689|ENTPD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.2874145507812	2	595.287474	1188.5604	0.057002	3.3933E-05	0.68711	0.00040903	0.74411	0.00044296	595.2876318401962	65.233	0.45856	65.322	65.06	65.519	0.088882					40	16	3	0	0	0	0.088443	1	16247	16247		39.95	22.837	1	414990			42368	7944;8026	24448	24449	51746	51746					-0.02634257039721888
SFVYNHYLF	9	Unmodified	_SFVYNHYLF_					0	0	0		ENSG00000197217|ENST00000358689|ENTPD4;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000197217|ENST00000358689|ENTPD4;ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000197217|ENST00000358689|ENTPD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.2872924804688	2	595.287474	1188.5604	0.22592	0.00013449	0.42169	0.00025103	0.64761	0.00038551	595.2876729853792	65.317	0.46397	65.306	65.122	65.586	-0.01133					41	16	3	0	0	0	0.079752	1	16275	16275		41.84	24.727	1	418590			42369	7944;8026	24448	24449	51747	51747					-0.02634257039721888
SFWFETDAELI	11	Unmodified	_SFWFETDAELI_					0	0	0			REV__ENSG00000119285|ENST00000366582|HEATR1	REV__ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7922668457031	3	453.215204	1356.62378	0.49927	0.00022628	-3.3228	-0.001506	-2.8236	-0.0012797	453.21349879320417	50.757	0.46088	50.804	50.604	51.064	0.046574					24	16	2	0	0	0	0.32774	1	11780	11780		9.7643	1.8189	1	281740	+		42370	15035	24449	24450	51748	51748					-0.040263611131422294
SFWGSTVV	8	Unmodified	_SFWGSTVV_					0	0	0		ENST00000451137.6_1_1:86049001-86049178:+|nuORF	ENST00000451137.6_1_1:86049001-86049178:+|nuORF	ENST00000451137.6_1_1:86049001-86049178:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7212219238281	2	441.721436	881.428318	0.17994	7.9482E-05	-0.30173	-0.00013328	-0.12179	-5.3797E-05	441.72127650225775	91.067	0.57539	91.067	90.853	91.429	0					69	41	2	0	0	0	0.45942	2	24155	24155;24197		2.5775	0	1	1153200			42371	10647	24450	24451	51749;51750	51749					-0.017138620566697682
SFWWAVVT	8	Unmodified	_SFWWAVVT_					0	0	0		ENSG00000104848|ENST00000221444|KCNA7	ENSG00000104848|ENST00000221444|KCNA7	ENSG00000104848|ENST00000221444|KCNA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.765869140625	2	498.252903	994.491253	0.30609	0.00015251	0.1091	5.4359E-05	0.41519	0.00020687	498.25256305835853	30.745	0.45711	30.773	30.552	31.009	0.027948					19	15	2	0	0	0	0.34092	1	5712	5712		13.508	0	1	71612			42372	1922	24451	24452	51751	51751					-0.006212962686163337
SFYFFAAFH	9	Unmodified	_SFYFFAAFH_					0	0	0			REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF	REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.8450317382812	2	568.763635	1135.51272	0.11577	6.5844E-05	-1.0581	-0.00060181	-0.94233	-0.00053596	568.7628383891632	33.88	0.85148	33.947	33.387	34.239	0.066704					66	30	3	0	0	0	0.23783	1	6632	6632		18.135	18.135	1	485160	+		42373	22087	24452	24453	51752	51752					-0.049619112399113874
SFYFFAAFH	9	Unmodified	_SFYFFAAFH_					0	0	0			REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF	REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	568.763635	1135.51272	0.56981	0.00032409	-1.5878	-0.00090311	-1.018	-0.00057902	568.7626007107988	34.067	0.71936	34.067	33.617	34.336	0	0.091624	-4.0955E-05	NaN	18.135	61	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	520920	+		42374	22087	24452	24453							-0.049619112399113874
SFYFFAAFH	9	Unmodified	_SFYFFAAFH_					0	0	0			REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF	REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	568.763635	1135.51272	0.89065	0.00050657	-1.9161	-0.0010898	-1.0255	-0.00058324	568.7625959049958	33.846	0.85854	33.912	33.458	34.317	0.06636	-0.06324	-0.00041435	NaN	18.135	74	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	500170	+		42375	22087	24452	24453							-0.049619112399113874
SFYKIQRYTL	10	Unmodified	_SFYKIQRYTL_					0	0	0			REV__ENSG00000105143|ENST00000594383|SLC1A6	REV__ENSG00000105143|ENST00000594383|SLC1A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.26995849609375	3	440.243317	1317.70812	0.10602	4.6674E-05	-0.53344	-0.00023484	-0.42742	-0.00018817	440.2430193012261	44.035	0.4575	44.119	43.97	44.427	0.083992					23	16	2	0	0	0	0.31942	1	9694	9694		3.5871	3.5871	1	364380	+		42376	14440	24453	24454	51753	51753					0.061976344942877404
SFYKIQRYTL	10	Unmodified	_SFYKIQRYTL_					0	0	0			REV__ENSG00000105143|ENST00000594383|SLC1A6	REV__ENSG00000105143|ENST00000594383|SLC1A6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	440.243317	1317.70812	0.27875	0.00012272	-0.36031	-0.00015862	-0.08156	-3.5906E-05	440.243069342671	44.49	0.51534	44.49	44.255	44.771	0	0.18584	8.2122E-05	NaN	3.5871	31	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231650	+		42377	14440	24453	24454							0.061976344942877404
SFYPEEVSSM	10	Unmodified	_SFYPEEVSSM_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA8|p.V139Gfs*50|1|0.11|ENSG00000109971|chr11:123060264-123060265|-/CAGTCTAC|frameshift_variant	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.752197265625	2	588.249897	1174.48524	0.20018	0.00011776	1.5258	0.00089758	1.726	0.0010153	588.2505666439348	61.224	0.40911	61.224	61.052	61.461	0					24	15	2	0	0	0	0.38515	1	15064	15064		6.2058	0	1	788810			42378	2285	24454	24455	51754	51754					-0.09502227353118542
SFYPEEVSSM	10	Unmodified	_SFYPEEVSSM_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA8|p.V139Gfs*50|1|0.11|ENSG00000109971|chr11:123060264-123060265|-/CAGTCTAC|frameshift_variant	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	588.249897	1174.48524	0.20018	0.00011776	1.5258	0.00089758	1.726	0.0010153	588.2505666439348	61.224	0.40911	61.224	61.052	61.461	0	0.021331	-0.0002061	NaN	6.2058	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	788810			42379	2285	24454	24455							-0.09502227353118542
SFYPEEVSSM	10	Unmodified	_SFYPEEVSSM_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA8|p.V139Gfs*50|1|0.11|ENSG00000109971|chr11:123060264-123060265|-/CAGTCTAC|frameshift_variant	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	588.249897	1174.48524	0.2213	0.00013018	1.9335	0.0011374	2.1548	0.0012676	588.2507410519353	61.191	0.48723	61.181	61.016	61.504	-0.0094566	-0.021331	0.00027351	NaN	6.2058	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	766320			42380	2285	24454	24455							-0.09502227353118542
SFYQACCLPGV	11	Unmodified	_SFYQACCLPGV_					0	0	0		nc|ENSG00000157800|Q8NCC5-3|SLC37A3;nc|ENSG00000157800|Q8NCC5-2|SLC37A3;ENSG00000157800|ENST00000326232|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	nc|ENSG00000157800|Q8NCC5-3|SLC37A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.265625	2	594.264827	1186.5151	0.055478	3.2969E-05	0.25245	0.00015002	0.30793	0.00018299	594.2653973572375	60.114	0.62487	60.114	59.844	60.469	0					50	22	3	0	0	0	0.39234	1	14650	14650		12.241	2.8575	1	1575700			42381	5326	24455	24456	51755	51755					-0.07069566888799272
SFYRSVKMC	9	Unmodified	_SFYRSVKMC_					0	0	0		LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7978515625	2	560.767537	1119.52052	0.056667	3.1777E-05	-2.159	-0.0012107	-2.1023	-0.0011789	560.7667505372406	66.976	0.28139	66.963	66.869	67.151	-0.013596					13	9	2	0	0	0	0.23784	1	16828	16828		19.257	5.7491	1	87011			42382	12506	24456	24457	51756	51756					-0.03445843306280949
SFYSQYKAQ	9	Unmodified	_SFYSQYKAQ_					0	0	0			REV__nc|ENSG00000162601|Q5VVJ2-3|MYSM1	REV__nc|ENSG00000162601|Q5VVJ2-3|MYSM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.265625	2	561.266739	1120.51892	0.15743	8.8358E-05	0.0077445	4.3467E-06	0.16517	9.2705E-05	561.2665449530978	41.96	0.48106	41.96	41.825	42.306	0					31	15	3	0	0	0	0.18803	1	9164	9164		25.399	6.1423	1	898390	+		42383	16991	24457	24458	51757	51757					-0.03651437799044288
SFYSQYKAQ	9	Unmodified	_SFYSQYKAQ_					0	0	0			REV__nc|ENSG00000162601|Q5VVJ2-3|MYSM1	REV__nc|ENSG00000162601|Q5VVJ2-3|MYSM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2667236328125	2	561.266739	1120.51892	0.15743	8.8358E-05	0.0077445	4.3467E-06	0.16517	9.2705E-05	561.2665449530978	41.96	0.48106	41.96	41.825	42.306	0					31	15	3	0	0	0	0.12743	1	9115	9115		46.021	2.1627	1	898390	+		42384	16991	24457	24458	51758	51758					-0.03651437799044288
SFYSQYKAQ	9	Unmodified	_SFYSQYKAQ_					0	0	0			REV__nc|ENSG00000162601|Q5VVJ2-3|MYSM1	REV__nc|ENSG00000162601|Q5VVJ2-3|MYSM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2669677734375	2	561.266739	1120.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.611	1	41.701	41.201	42.201	0.090252								0	0	0	0.091794	1	8986	8986		48.346	2.6462	1		+		42385	16991	24457	24458	51759	51759					-0.03651437799044288
SFYSQYKAQ	9	Unmodified	_SFYSQYKAQ_					0	0	0			REV__nc|ENSG00000162601|Q5VVJ2-3|MYSM1	REV__nc|ENSG00000162601|Q5VVJ2-3|MYSM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2661743164062	2	561.266739	1120.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.555	1	41.652	41.152	42.152	0.096626								0	0	0	0.078733	1	8959	8959		52.268	10.313	1		+		42386	16991	24457	24458	51760	51760					-0.03651437799044288
SFYSQYKAQ	9	Unmodified	_SFYSQYKAQ_					0	0	0			REV__nc|ENSG00000162601|Q5VVJ2-3|MYSM1	REV__nc|ENSG00000162601|Q5VVJ2-3|MYSM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2672119140625	2	561.266739	1120.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.701	1	41.798	41.298	42.298	0.096626								0	0	0	0.11063	1	9005	9005		43.858	17.59	1		+		42387	16991	24457	24458	51761	51761					-0.03651437799044288
SGAPNLPVYVV	11	Unmodified	_SGAPNLPVYVV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.32470703125	2	558.308406	1114.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.71	1	89.8	89.3	90.3	0.090569								0	0	0	0.36137	1	23743	23743		5.7319	0.83484	1				42388	1710	24458	24459	51762	51762					0.04954298648817712
SGAPPLESLSF	11	Unmodified	_SGAPPLESLSF_					0	0	0			REV__nc|ENSG00000292277|Q9UJ98-3|STAG3	REV__nc|ENSG00000292277|Q9UJ98-3|STAG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3040771484375	2	552.782222	1103.54989	0.16048	8.8712E-05	-2.2936	-0.0012678	-2.1331	-0.0011791	553.2827582752531	15.114	0.3817	15.004	14.93	15.312	-0.10981					28	13	3	0	0	0	0.33175	1	945	945		4.897	0	1	61395	+		42389	13684	24459	24460	51763	51763					0.0022571551517103217
SGAQPILSK	9	Unmodified	_SGAQPILSK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.76080322265625	2	450.761092	899.507631	0.005501	2.4796E-06	-0.25334	-0.0001142	-0.24784	-0.00011172	450.7609125561643	23.363	0.74583	23.363	23.197	23.943	0					71	25	4	0	0	0	0.0016481	3	3407	3407;3456;3476		114.5	58.32	1	529530			42390	1969	24460	24461	51764;51765;51766	51764					0.05385784897475787
SGAQPILSK	9	Unmodified	_SGAQPILSK_					0	0	0		nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	nc|ENSG00000105355|O60664-4|PLIN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7609558105469	2	450.761092	899.507631	0.041643	1.8771E-05	-0.26355	-0.0001188	-0.22191	-0.00010003	450.7608854421172	23.422	1.1184	23.334	23.165	24.283	-0.087608					81	38	4	0	0	0	0.0027197	2	3480	3480;3508		104.48	60.626	1	619890			42391	1969	24460	24461	51767;51768	51767					0.05385784897475787
SGARRFRRWL	10	Unmodified	_SGARRFRRWL_					0	0	0		nc|ENSG00000204183|Q5U4N7|GDF5-AS1	nc|ENSG00000204183|Q5U4N7|GDF5-AS1	nc|ENSG00000204183|Q5U4N7|GDF5-AS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.24700927734375	3	435.586412	1303.73741	-0.54838	-0.00023887	-1.3799	-0.00060106	-1.9283	-0.00083993	435.58578731088124	34.503	0.53529	34.58	34.22	34.755	0.077377					32	18	2	0	0	0	0.31994	1	6856	6856		3.0723	0	1	124220			42392	12907	24461	24462	51769	51769					0.0976863635380596
SGASCCPCWC	10	Unmodified	_SGASCCPCWC_					0	0	0		ENST00000548568.5_1_12:120636762-120636819:-|nuORF	ENST00000548568.5_1_12:120636762-120636819:-|nuORF	ENST00000548568.5_1_12:120636762-120636819:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.26434326171875	2	508.658283	1015.30201	0.34868	0.00017736	1.8563	0.00094423	2.205	0.0011216	508.65973986344443	21.51	0.67038	21.51	21.199	21.87	0					42	23	3	0	0	0	0.32123	1	2887	2887		1.6526	0.17072	1	100460			42393	11776	24462	24463	51770	51770					-0.20502519211777326
SGASCCPCWC	10	Unmodified	_SGASCCPCWC_					0	0	0		ENST00000548568.5_1_12:120636762-120636819:-|nuORF	ENST00000548568.5_1_12:120636762-120636819:-|nuORF	ENST00000548568.5_1_12:120636762-120636819:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.26416015625	2	508.658283	1015.30201	0.39336	0.00020008	1.9304	0.00098192	2.3238	0.001182	508.65977273593427	21.593	0.49794	21.492	21.275	21.773	-0.10034					37	17	3	0	0	0	0.32123	1	2838	2838		1.6526	0.17072	1	112210			42394	11776	24462	24463	51771	51771					-0.20502519211777326
SGASDKAGI	9	Unmodified	_SGASDKAGI_					0	0	0		ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.1964416503906	2	403.20615	804.397747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.418	1	24.418	23.918	24.918	0								0	0	0	0.24522	1	3744	3744		7.9102	0.62092	1				42395	7863	24463	24464	51772	51772					-0.012276404416979858
SGATIRIFK	9	Unmodified	_SGATIRIFK_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2;ENSG00000172296|ENST00000399002|SPTLC3	ENSG00000100596|ENST00000216484|SPTLC2;ENSG00000172296|ENST00000399002|SPTLC3	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7982177734375	2	496.798009	991.581465	0.19478	9.6765E-05	0.62022	0.00030812	0.815	0.00040489	496.7986171957163	33.623	0.5254	33.689	33.469	33.995	0.066704					39	18	3	0	0	0	0.13671	1	6551	6551		32.898	10.24	1	340050			42396	1610;6618	24464	24465	51773	51773					0.0853375305979398
SGEFPVSDYF	10	Unmodified	_SGEFPVSDYF_					0	0	0		ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2501831054688	2	574.250754	1146.48696	0.35172	0.00020198	1.1707	0.00067229	1.5224	0.00087426	574.2508701384919	71.25	1.2329	71.311	71.044	72.277	0.060783					83	44	3	0	0	0	0.091471	1	18099	18099		49.933	15.831	1	776780			42397	7776	24465	24466	51774	51774					-0.08042850272863689
SGEFPVSDYF	10	Unmodified	_SGEFPVSDYF_					0	0	0		ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	574.250754	1146.48696	0.27324	0.00015691	1.5462	0.00088793	1.8195	0.0010448	574.2510883920497	71.393	1.305	71.393	71.043	72.348	0	0.037612	0.00037667	NaN	49.933	91	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	657540			42398	7776	24465	24466							-0.08042850272863689
SGEFPVSDYF	10	Unmodified	_SGEFPVSDYF_					0	0	0		ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	574.250754	1146.48696	0.33641	0.00019318	1.0365	0.00059518	1.3729	0.00078837	574.2511736561776	71.389	1.1783	71.362	71.128	72.306	-0.027267	0.0067467	-0.00020882	NaN	49.933	81	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	909920			42399	7776	24465	24466							-0.08042850272863689
SGELNNEGCF	10	Unmodified	_SGELNNEGCF_					0	0	0		CON__ENSEMBL:ENSBTAP00000024146	CON__ENSEMBL:ENSBTAP00000024146	CON__ENSEMBL:ENSBTAP00000024146	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.232177734375	2	535.216388	1068.41822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.227	1	86.227	85.727	86.727	0								0	0	0	0.37664	1	22685	22685		3.5965	0	1			+	42400	202	24466	24467	51775	51775					-0.11324837844199465
SGFAGVYFEK	10	Unmodified	_SGFAGVYFEK_					0	0	0		ENSG00000164414|ENST00000369552|SLC35A1;nc|ENSG00000283761|Q9Y2D2-3|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000102100|P78381-5|SLC35A2;nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2	ENSG00000164414|ENST00000369552|SLC35A1;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;nc|ENSG00000102100|P78381-5|SLC35A2	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7718505859375	2	552.771657	1103.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.95	1	50.95	50.45	51.45	0								0	0	0	0.084657	1	11853	11853		57.108	24.322	1				42401	13000;5842;1745	24467	24468	51776	51776					-0.018862497936879663
SGFAGVYFEK	10	Unmodified	_SGFAGVYFEK_					0	0	0		ENSG00000164414|ENST00000369552|SLC35A1;nc|ENSG00000283761|Q9Y2D2-3|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000102100|P78381-5|SLC35A2;nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2	ENSG00000164414|ENST00000369552|SLC35A1;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;nc|ENSG00000102100|P78381-5|SLC35A2	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7720336914062	2	552.771657	1103.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.898	1	50.944	50.444	51.444	0.046574								0	0	0	0.0079346	1	11836	11836		73.196	33.247	1				42402	13000;5842;1745	24467	24468	51777	51777					-0.018862497936879663
SGFAGVYFEK	10	Unmodified	_SGFAGVYFEK_					0	0	0		ENSG00000164414|ENST00000369552|SLC35A1;nc|ENSG00000283761|Q9Y2D2-3|SLC35A3;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;ENSG00000117620|ENST00000533028|SLC35A3;nc|ENSG00000102100|P78381-5|SLC35A2;nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2	ENSG00000164414|ENST00000369552|SLC35A1;nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;nc|ENSG00000102100|P78381-5|SLC35A2	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7720336914062	2	552.771657	1103.52876	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.957	1	50.966	50.466	51.466	0.0095634								0	0	0	0.042108	1	11847	11847		64.927	36.432	1				42403	13000;5842;1745	24467	24468	51778	51778					-0.018862497936879663
SGFEGMFTK	9	Oxidation (M)	_SGFEGM(Oxidation (M))FTK_		SGFEGM(1)FTK		SGFEGM(130)FTK	0	0	1		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2284240722656	2	510.228768	1018.44298	-0.63122	-0.00032207	-0.055992	-2.8569E-05	-0.68721	-0.00035064	510.22882966074826	35.15	0.40965	35.15	34.892	35.302	0					44	14	4	0	0	0	0.00024732	1	7011	7011		132.38	53.652	1	4325500			42404	5064	24468	24469	51779	51779		625			-0.06550157970821147
SGFEGMFTK	9	Oxidation (M)	_SGFEGM(Oxidation (M))FTK_		SGFEGM(1)FTK		SGFEGM(160)FTK	0	0	1		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.22900390625	2	510.228768	1018.44298	0.16776	8.5595E-05	0.8696	0.0004437	1.0374	0.00052929	510.22884674476677	35.478	1.0298	35.478	35.227	36.256	0					124	37	6	0	0	0	4.216E-07	3	7102	7102;7154;7206		163.69	74.733	1	4794000			42405	5064	24468	24469	51780;51781;51782	51780		625			-0.06550157970821147
SGFEGMFTK	9	Oxidation (M)	_SGFEGM(Oxidation (M))FTK_		SGFEGM(1)FTK		SGFEGM(150)FTK	0	0	1		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2286376953125	2	510.228768	1018.44298	-0.63801	-0.00032553	0.12675	6.4671E-05	-0.51126	-0.00026086	510.2288761031756	35.133	0.4423	35.208	34.904	35.346	0.075306					49	15	4	0	0	0	3.4202E-05	2	7024	6982;7024		151.48	67.86	1	4558300			42406	5064	24468	24469	51783;51784	51784		625			-0.06550157970821147
SGFEGMFTK	9	Oxidation (M)	_SGFEGM(Oxidation (M))FTK_		SGFEGM(1)FTK		SGFEGM(160)FTK	0	0	1		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2288818359375	2	510.228768	1018.44298	0.16499	8.4184E-05	0.27702	0.00014134	0.44201	0.00022553	510.2288652067279	35.43	0.81839	35.506	35.318	36.136	0.075306					95	29	5	0	0	0	4.216E-07	3	7083	7083;7126;7173		163.69	74.733	1	5110500			42407	5064	24468	24469	51785;51786;51787	51785		625			-0.06550157970821147
SGFEGMFTK	9	Oxidation (M)	_SGFEGM(Oxidation (M))FTK_		SGFEGM(1)FTK		SGFEGM(130)FTK	0	0	1		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.228515625	2	510.228768	1018.44298	-0.74519	-0.00038021	0.39655	0.00020233	-0.34863	-0.00017788	510.2289995001388	35.084	0.47092	35.162	34.837	35.308	0.077377					58	16	5	0	0	0	0.00024732	1	6972	6972		132.38	53.652	1	4591400			42408	5064	24468	24469	51788	51788		625			-0.06550157970821147
SGFEGMFTK	9	Oxidation (M)	_SGFEGM(Oxidation (M))FTK_					0	0	1		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	510.228768	1018.44298	-0.20854	-0.0001064	0.79045	0.00040331	0.58191	0.00029691	510.2290787737061	35.379	0.93313	35.457	35.254	36.187	0.077381	-0.023446	0.00019551	NaN	163.69	94	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5289800			42409	5064	24468	24469				625			-0.06550157970821147
SGFGKKFYYK	10	Unmodified	_SGFGKKFYYK_					0	0	0		nc|ENSG00000117335|P15529-2|CD46;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-13|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-15|CD46;nc|ENSG00000117335|P15529-16|CD46;ENST00000469535.5_1_1:207934598-207940656:+|nuORF	nc|ENSG00000117335|P15529-2|CD46;ENST00000469535.5_1_1:207934598-207940656:+|nuORF	nc|ENSG00000117335|P15529-2|CD46	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.885009765625	3	408.885241	1223.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.411	1	27.39	26.89	27.89	-0.021412								0	0	0	0.32869	1	4651	4651		20.871	12.585	1				42410	2789;10857	24469	24470	51789	51789					0.03102291402751689
SGFGKKFYYK	10	Unmodified	_SGFGKKFYYK_					0	0	0		nc|ENSG00000117335|P15529-2|CD46;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-13|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-15|CD46;nc|ENSG00000117335|P15529-16|CD46;ENST00000469535.5_1_1:207934598-207940656:+|nuORF	nc|ENSG00000117335|P15529-2|CD46;ENST00000469535.5_1_1:207934598-207940656:+|nuORF	nc|ENSG00000117335|P15529-2|CD46	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.885009765625	3	408.885241	1223.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.487	1	27.476	26.976	27.976	-0.01156								0	0	0	0.16693	1	4669	4669		38.559	27.494	1				42411	2789;10857	24469	24470	51790	51790					0.03102291402751689
SGFLFATG	8	Unmodified	_SGFLFATG_					0	0	0		ENSG00000162843|ENST00000437684|WDR64;nc|ENSG00000162843|B1ANS9|WDR64;nc|ENSG00000162843|B1ANS9-2|WDR64	ENSG00000162843|ENST00000437684|WDR64	ENSG00000162843|ENST00000437684|WDR64	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	400.2030334472656	2	400.202879	798.391205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.159	1	91.25	90.75	91.75	0.090668								0	0	0	0.37078	1	24184	24184		5.2307	0	1				42412	5624	24470	24471	51791	51791					-0.016055336024351163
SGFNPNQGFFK	11	Unmodified	_SGFNPNQGFFK_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENST00000497368.1_1_7:157023781-157024027:+|nuORF	ENSG00000009335|ENST00000348165|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.799072265625	2	621.798737	1241.58292	0.39103	0.00024314	-0.36336	-0.00022594	0.027675	1.7208E-05	621.7986792718136	51.502	0.32142	51.502	51.327	51.648	0					19	11	2	0	0	0	0.064121	1	12035	12035		59.052	48.979	1	246320			42413	406	24471	24472	51792	51792					-0.02820657642109836
SGFNPNQGFFK	11	Unmodified	_SGFNPNQGFFK_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENST00000497368.1_1_7:157023781-157024027:+|nuORF	ENSG00000009335|ENST00000348165|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.7988891601562	2	621.798737	1241.58292	0.073458	4.5676E-05	-0.009121	-5.6715E-06	0.064337	4.0005E-05	621.7989874495975	51.471	0.30017	51.517	51.321	51.621	0.046574					20	10	3	0	0	0	0.2454	1	12031	12031		27.223	15.583	1	331650			42414	406	24471	24472	51793	51793					-0.02820657642109836
SGFNPNQGFFK	11	Unmodified	_SGFNPNQGFFK_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENST00000497368.1_1_7:157023781-157024027:+|nuORF	ENSG00000009335|ENST00000348165|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3011474609375	2	621.798737	1241.58292	0.16081	9.9989E-05	0.44853	0.00027889	0.60933	0.00037888	622.300357677062	51.617	0.37664	51.627	51.452	51.829	0.0095634					22	13	2	0	0	0	0.064121	1	12064	12064		59.052	42.903	1	361050			42415	406	24471	24472	51794	51794					-0.02820657642109836
SGFVAIKK	8	Unmodified	_SGFVAIKK_					0	0	0		ENSG00000198478|ENST00000369838|SH3BGRL2	ENSG00000198478|ENST00000369838|SH3BGRL2	ENSG00000198478|ENST00000369838|SH3BGRL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.2633972167969	2	425.263271	848.511988	-0.12083	-5.1383E-05	0.57829	0.00024593	0.45746	0.00019454	425.2634150499384	16.762	1.1685	16.762	16.491	17.66	0					61	40	2	0	0	0	0.11736	1	1419	1419		57.471	6.6163	1	1272600			42416	8077	24472	24473	51795	51795					0.08167294111046886
SGFVAIKK	8	Unmodified	_SGFVAIKK_					0	0	0		ENSG00000198478|ENST00000369838|SH3BGRL2	ENSG00000198478|ENST00000369838|SH3BGRL2	ENSG00000198478|ENST00000369838|SH3BGRL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.2635192871094	2	425.263271	848.511988	-0.0023995	-1.0204E-06	0.4854	0.00020642	0.48301	0.0002054	425.2633806440893	16.803	1.2388	16.741	16.495	17.734	-0.062534					68	43	2	0	0	0	0.11736	2	1422	1422;1462		57.471	6.6163	1	1402800			42417	8077	24472	24473	51796;51797	51796					0.08167294111046886
SGGPLIVHK	9	Unmodified	_SGGPLIVHK_					0	0	0		ENST00000482312.1_1_6:31918808-31919804:+|nuORF;ENSG00000243649|ENST00000425368|CFB	ENST00000482312.1_1_6:31918808-31919804:+|nuORF	ENST00000482312.1_1_6:31918808-31919804:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2403869628906	2	454.271627	906.528701	0.18913	8.5917E-05	0.79684	0.00036198	0.98597	0.0004479	454.2718587950336	20.437	0.33441	20.437	20.207	20.542	0					33	11	4	0	0	0	0.067563	1	2551	2551		66.457	29.95	1	251020			42418	8558	24473	24474	51798	51798					0.07169794996991641
SGGPLIVHK	9	Unmodified	_SGGPLIVHK_					0	0	0		ENST00000482312.1_1_6:31918808-31919804:+|nuORF;ENSG00000243649|ENST00000425368|CFB	ENST00000482312.1_1_6:31918808-31919804:+|nuORF	ENST00000482312.1_1_6:31918808-31919804:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2403564453125	2	454.271627	906.528701	0.4274	0.00019415	0.47615	0.0002163	0.90354	0.00041045	454.27179273210896	20.632	0.31439	20.522	20.322	20.637	-0.11003					26	10	4	0	0	0	0.059216	1	2607	2607		69.105	29.155	1	235550			42419	8558	24473	24474	51799	51799					0.07169794996991641
SGGPLIVHK	9	Unmodified	_SGGPLIVHK_					0	0	0		ENST00000482312.1_1_6:31918808-31919804:+|nuORF;ENSG00000243649|ENST00000425368|CFB	ENST00000482312.1_1_6:31918808-31919804:+|nuORF	ENST00000482312.1_1_6:31918808-31919804:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.2403564453125	2	454.271627	906.528701	0.45648	0.00020737	1.2641	0.00057425	1.7206	0.00078161	454.27205811759603	20.519	0.28198	20.466	20.302	20.584	-0.05291					22	9	3	0	0	0	0.03332	1	2585	2585		60.074	20.124	1	234400			42420	8558	24473	24474	51800	51800					0.07169794996991641
SGHAQAQKELI	11	Unmodified	_SGHAQAQKELI_					0	0	0			REV__ENSG00000215910|ENST00000688073|C1orf167	REV__ENSG00000215910|ENST00000688073|C1orf167	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.2779541015625	2	591.317294	1180.62004	0.38619	0.00022836	1.2877	0.00076144	1.6739	0.0009898	591.3179769494901	29.015	0.35895	29.028	28.831	29.19	0.012266					21	12	2	0	0	0	0.3327	1	5087	5087		2.7352	0	1	109350	+		42421	19082	24474	24475	51801	51801					0.03695013903666222
SGHKYGPFGPE	11	Unmodified	_SGHKYGPFGPE_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.2776489257812	2	588.277638	1174.54072	-0.0050253	-2.9563E-06	-0.20076	-0.0001181	-0.20579	-0.00012106	588.2775803739934	14.318	0.72431	14.214	13.816	14.54	-0.10466					56	24	3	0	0	0	0.44828	1	691	691		4.897	0.141	1	203300			42422	4018	24475	24476	51802	51802					-0.03956633050484015
SGIGQPIIVTM	11	Unmodified	_SGIGQPIIVTM_					0	0	0		nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.8041381835938	2	558.310092	1114.60563	0.44441	0.00024812	-0.17161	-9.5811E-05	0.27281	0.00015231	558.3099442891057	86.024	0.66286	86.108	85.888	86.551	0.084251					52	25	3	0	0	0	0.33149	1	22697	22697		5.2969	0.96765	1	225270			42423	1865	24476	24477	51803	51803					0.05291225431142266
SGIIRLHTIKQ	11	Unmodified	_SGIIRLHTIKQ_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3707275390625	2	633.388054	1264.76155	-0.060202	-3.8131E-05	-0.19473	-0.00012334	-0.25494	-0.00016147	633.8903085259533	104.58	0.56749	104.58	104.34	104.91	0					120	79	2	0	0	0	0.47545	1	27792	27792		0.30703	0	1	156630			42424	1866	24477	24478	51804	51804					0.13976431996775318
SGILKLFKTKC	11	Unmodified	_SGILKLFKTKC_					0	0	0		ENST00000463333.6_1_2:86842338-86849901:-|nuORF	ENST00000463333.6_1_2:86842338-86849901:-|nuORF	ENST00000463333.6_1_2:86842338-86849901:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.3709716796875	2	619.370484	1236.72641	0.22815	0.00014131	-0.72266	-0.00044759	-0.49451	-0.00030628	619.370673733844	91.758	1.3518	91.758	91.205	92.557	0					278	100	4	0	0	0	0.46475	1	24451	24451		2.7352	0.89096	1	787150			42425	10763	24478	24479	51805	51805					0.11752053144618912
SGIQVRYLK	9	Unmodified	_SGIQVRYLK_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3175048828125	2	532.316566	1062.61858	0.56485	0.00030068	0.68454	0.00036439	1.2494	0.00066507	532.316852529463	32.762	0.61881	32.762	32.556	33.174	0					43	21	3	0	0	0	0.011693	1	6278	6278		76.825	34.869	1	320500			42426	993	24479	24480	51806	51806					0.0897742460556401
SGIQVRYLK	9	Unmodified	_SGIQVRYLK_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3169555664062	2	532.316566	1062.61858	0.48137	0.00025624	0.23214	0.00012357	0.71352	0.00037982	532.3165779973582	32.65	0.58297	32.705	32.45	33.033	0.055309					33	20	2	0	0	0	0.017549	1	6239	6239		67.838	32.906	1	596050			42427	993	24479	24480	51807	51807					0.0897742460556401
SGIQVRYLK	9	Unmodified	_SGIQVRYLK_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.317138671875	2	532.316566	1062.61858	0.48779	0.00025966	0.59455	0.00031649	1.0823	0.00057614	532.3168580411073	32.686	0.54237	32.74	32.526	33.069	0.054371					41	19	3	0	0	0	0.038291	2	6240	6240;6293		57.249	22.317	1	500490			42428	993	24479	24480	51808;51809	51808					0.0897742460556401
SGIRDLKEPAS	11	Unmodified	_SGIRDLKEPAS_					0	0	0			REV__nc|ENSG00000132294|Q14156-3|EFR3A	REV__nc|ENSG00000132294|Q14156-3|EFR3A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8340454101562	2	586.817127	1171.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.894	1	81.894	81.394	82.394	0								0	0	0	0.35283	1	21353	21353		7.609	0	1		+		42429	15556	24480	24481	51810	51810					0.04075594183814246
SGIVFQWGTG	10	Unmodified	_SGIVFQWGTG_					0	0	0		ENST00000527494.5_1_11:17899771-18022052:-|nuORF;nc|ENSG00000129158|Q9UGK8-2|SERGEF;ENSG00000129158|ENST00000265965|SERGEF	ENST00000527494.5_1_11:17899771-18022052:-|nuORF	ENST00000527494.5_1_11:17899771-18022052:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.281982421875	2	526.263999	1050.51345	0.21214	0.00011164	4.3538	0.0022912	4.5659	0.0024029	526.2674317549034	15.2	0.41096	15.136	15.013	15.424	-0.064414					31	13	4	0	0	0	0.39227	1	943	943		4.897	0.36815	1	108270			42430	3411	24481	24482	51811	51811					-0.0097911659086094
SGIVTMKLIL	10	Unmodified	_SGIVTMKLIL_					0	0	0			REV__ENST00000535387.5_2_9:95072482-95076565:-|nuORF	REV__ENST00000535387.5_2_9:95072482-95076565:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.78857421875	2	537.833203	1073.65185	0.47446	0.00025518	2.7169	0.0014612	3.1914	0.0017164	537.8337059588229	31.481	0.19464	31.522	31.365	31.559	0.040991					11	6	2	0	0	0	0.32009	1	5876	5876		3.9444	0.3479	1	114280	+		42431	22065	24482	24483	51812	51812					0.11797290333265664
SGKWLQEPA	9	Unmodified	_SGKWLQEPA_					0	0	0		ENSG00000101353|ENST00000343811|MROH8	ENSG00000101353|ENST00000343811|MROH8	ENSG00000101353|ENST00000343811|MROH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.28021240234375	2	508.263999	1014.51345	0.14211	7.223E-05	-4.3399	-0.0022058	-4.1978	-0.0021336	508.26162670470814	19.218	0.32054	19.163	19.017	19.337	-0.055693					12	10	2	0	0	0	0.25202	1	2210	2210		10.824	0	1	25331			42432	1691	24483	24484	51813	51813					0.006768834091303688
SGLFTEKSKNK	11	Unmodified	_SGLFTEKSKNK_					0	0	0			REV__nc|ENSG00000260916|Q9ULG6-4|CCPG1	REV__nc|ENSG00000260916|Q9ULG6-4|CCPG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5627746582031	3	413.562827	1237.66665	0.14523	6.006E-05	-0.13766	-5.6932E-05	0.0075629	3.1277E-06	413.5627127443148	39.362	1.0055	39.455	39.17	40.176	0.09267					115	35	5	0	0	0	0.36722	1	8308	8308		15.538	0	1	1987000	+		42433	19280	24484	24485	51814	51814					0.05732453734935916
SGLGSFPFK	9	Unmodified	_SGLGSFPFK_					0	0	0		ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.5697326660156	2	470.25036	938.486168	0.29626	0.00013932	0.13199	6.2067E-05	0.42825	0.00020139	470.2503436379134	53.827	0.53693	53.827	53.568	54.105	0					31	19	2	0	0	0	0.23749	1	12736	12736		20.415	6.9067	1	257640			42434	8116	24485	24486	51815	51815					0.01446399868757453
SGLGSFPFK	9	Unmodified	_SGLGSFPFK_					0	0	0		ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.5697326660156	2	470.25036	938.486168	0.051689	2.4307E-05	0.22893	0.00010765	0.28061	0.00013196	470.2502835928701	53.74	0.5503	53.796	53.585	54.136	0.056255					31	20	2	0	0	0	0.23749	1	12710	12710		20.415	13.125	1	243560			42435	8116	24485	24486	51816	51816					0.01446399868757453
SGLGSFPFK	9	Unmodified	_SGLGSFPFK_					0	0	0		ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7869567871094	2	470.25036	938.486168	0.35924	0.00016893	0.58722	0.00027614	0.94646	0.00044507	470.2506050982144	54.054	0.47352	54.038	53.809	54.282	-0.015923					25	16	2	0	0	0	0.24636	1	12742	12742		16.149	3.1066	1	246130			42436	8116	24485	24486	51817	51817					0.01446399868757453
SGLIPTPEIA	10	Unmodified	_SGLIPTPEIA_					0	0	0		ENST00000371471.6_1_20:52199349-52199430:-|nuORF	ENST00000371471.6_1_20:52199349-52199430:-|nuORF	ENST00000371471.6_1_20:52199349-52199430:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.76910400390625	2	499.281857	996.549162	0.55308	0.00027614	-1.0154	-0.00050697	-0.46232	-0.00023083	499.2813981825989	45.108	0.39271	45.177	45.034	45.427	0.068573					18	13	2	0	0	0	0.2593	1	10052	10052		25.399	3.6527	1	168960			42437	9820	24486	24487	51818	51818					0.05074920866138655
SGLIPTPEIA	10	Unmodified	_SGLIPTPEIA_					0	0	0		ENST00000371471.6_1_20:52199349-52199430:-|nuORF	ENST00000371471.6_1_20:52199349-52199430:-|nuORF	ENST00000371471.6_1_20:52199349-52199430:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7692565917969	2	499.281857	996.549162	0.44732	0.00022334	-0.80096	-0.0003999	-0.35363	-0.00017656	499.28147967388486	45.18	0.37442	45.255	45.072	45.446	0.07505					21	13	2	0	0	0	0.28434	1	10047	10047		25.399	0	1	151120			42438	9820	24486	24487	51819	51819					0.05074920866138655
SGLIVCIWLNC	11	Unmodified	_SGLIVCIWLNC_					0	0	0		ENST00000504968.6_1_4:110448568-110452548:+|nuORF	ENST00000504968.6_1_4:110448568-110452548:+|nuORF	ENST00000504968.6_1_4:110448568-110452548:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.8359985351562	2	610.811944	1219.60934	0.30385	0.0001856	0.018743	1.1448E-05	0.3226	0.00019705	610.812043130039	24.747	0.66516	24.747	24.454	25.12	0					45	22	3	0	0	0	0.46704	1	3808	3808		2.7352	2.7352	1	114190			42439	11306	24487	24488	51820	51820					0.008315719333950256
SGLLERKH	8	Unmodified	_SGLLERKH_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2723388671875	2	470.272158	938.529764	0.00050463	2.3731E-07	0.29287	0.00013773	0.29338	0.00013797	470.2722357752448	81.938	1.4045	82.007	81.461	82.866	0.068993					143	59	4	0	0	0	0.44569	1	21479	21479		7.2892	0.56607	1	3675100	+		42440	15623	24488	24489	51821	51821					0.05804009365908769
SGLLERKH	8	Unmodified	_SGLLERKH_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2722473144531	2	470.272158	938.529764	0.28184	0.00013254	0.030369	1.4282E-05	0.31221	0.00014682	470.2721015359529	82.116	1.5295	82.092	81.599	83.129	-0.02404					135	60	4	0	0	0	0.4419	1	21391	21391		8.5933	0	1	3977000	+		42441	15623	24488	24489	51822	51822					0.05804009365908769
SGLLSTFGGS	10	Unmodified	_SGLLSTFGGS_					0	0	0		PLCE1|p.Q1778Pfs*42|1|0.42|ENSG00000138193|chr10:94298540-94298541|-/C|frameshift_variant;nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1	PLCE1|p.Q1778Pfs*42|1|0.42|ENSG00000138193|chr10:94298540-94298541|-/C|frameshift_variant	PLCE1|p.Q1778Pfs*42|1|0.42|ENSG00000138193|chr10:94298540-94298541|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.9372863769531	2	463.234907	924.455261	0.37088	0.0001718	-0.13563	-6.2827E-05	0.23525	0.00010898	463.23466544537655	19.989	0.55114	19.934	19.624	20.175	-0.055693					49	19	3	0	0	0	0.31847	1	2461	2461		6.7232	6.7232	1	198200			42442	4131	24489	24490	51823	51823					-0.009987982361394643
SGLLTKPSRS	10	Unmodified	_SGLLTKPSRS_					0	0	0			REV__nc|ENSG00000146147|Q5VWP3-4|MLIP	REV__nc|ENSG00000146147|Q5VWP3-4|MLIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3035888671875	2	523.303655	1044.59276	0.45311	0.00023711	-0.3878	-0.00020293	0.065315	3.418E-05	523.303309180788	76.326	1.9064	76.326	75.649	77.555	0					243	69	5	0	0	0	0.37751	1	19802	19802		7.609	1.4032	1	3322100	+		42443	16330	24490	24491	51824	51824					0.07224530363282611
SGLLTKPSRS	10	Unmodified	_SGLLTKPSRS_					0	0	0			REV__nc|ENSG00000146147|Q5VWP3-4|MLIP	REV__nc|ENSG00000146147|Q5VWP3-4|MLIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3031616210938	2	523.303655	1044.59276	0.24256	0.00012693	-0.42969	-0.00022486	-0.18714	-9.793E-05	523.3033251497191	80.829	0.58663	80.894	80.546	81.133	0.065094					46	24	2	0	0	0	0.37133	1	20966	20966		8.7454	0	1	1052300	+		42444	16330	24490	24491	51825	51825					0.07224530363282611
SGLLTKPSRS	10	Unmodified	_SGLLTKPSRS_					0	0	0			REV__nc|ENSG00000146147|Q5VWP3-4|MLIP	REV__nc|ENSG00000146147|Q5VWP3-4|MLIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3036499023438	2	523.303655	1044.59276	0.61163	0.00032007	-0.42161	-0.00022063	0.19001	9.9435E-05	523.3032721893725	76.409	2.54	76.378	75.059	77.599	-0.031487					355	93	5	0	0	0	0.37751	3	19454	19454;19792;19838		7.609	1.4032	1	3309700	+		42445	16330	24490	24491	51826;51827;51828	51826					0.07224530363282611
SGLLVGIRYFI	11	Unmodified	_SGLLVGIRYFI_					0	0	0		ENSG00000151690|ENST00000392328|MFSD6	ENSG00000151690|ENST00000392328|MFSD6	ENSG00000151690|ENST00000392328|MFSD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.3718872070312	2	619.368798	1236.72304	0.37078	0.00022965	1.7351	0.0010747	2.1059	0.0013043	619.370569418945	91.757	1.4647	91.757	91.303	92.768	0.00046539					206	95	3	0	0	0	0.41896	1	24314	24314		8.7454	3.4485	1	1022300			42446	4975	24491	24492	51829	51829					0.11415126362271621
SGLPWRSAL	9	Unmodified	_SGLPWRSAL_					0	0	0			REV__ENST00000602523.1_1_10:22610509-22615561:+|nuORF	REV__ENST00000602523.1_1_10:22610509-22615561:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7734069824219	2	493.774534	985.534515	0.31327	0.00015469	-1.6066	-0.0007933	-1.2933	-0.00063861	493.77374155143053	41.504	0.69043	41.594	41.079	41.77	0.090248					66	28	4	0	0	0	0.10197	1	8960	8960		37.974	1.847	1	1971800	+		42447	22640	24492	24493	51830	51830					0.041168935086489
SGLPWRSAL	9	Unmodified	_SGLPWRSAL_					0	0	0			REV__ENST00000602523.1_1_10:22610509-22615561:+|nuORF	REV__ENST00000602523.1_1_10:22610509-22615561:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.774534	985.534515	0.36725	0.00018134	-1.859	-0.00091791	-1.4917	-0.00073657	493.7736175136221	41.753	0.5246	41.753	41.471	41.996	0	0.12346	4.3011E-05	NaN	37.974	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2396900	+		42448	22640	24492	24493							0.041168935086489
SGLPWRSAL	9	Unmodified	_SGLPWRSAL_					0	0	0			REV__ENST00000602523.1_1_10:22610509-22615561:+|nuORF	REV__ENST00000602523.1_1_10:22610509-22615561:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.774534	985.534515	0.49363	0.00024374	-2.1118	-0.0010428	-1.6182	-0.00079903	493.7735437631158	41.445	0.60247	41.542	41.065	41.667	0.096626	-0.087995	-0.00020672	NaN	37.974	58	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2628000	+		42449	22640	24492	24493							0.041168935086489
SGLRLTDTFLK	11	Unmodified	_SGLRLTDTFLK_					0	0	0		ENST00000512009.5_1_5:64960022-64960435:+|nuORF;nc|ENSG00000113597|A5PLN9-2|TRAPPC13;nc|ENSG00000113597|A5PLN9-4|TRAPPC13;ENSG00000113597|ENST00000399438|TRAPPC13;nc|ENSG00000113597|A5PLN9-5|TRAPPC13	ENST00000512009.5_1_5:64960022-64960435:+|nuORF	ENST00000512009.5_1_5:64960022-64960435:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.2358093261719	3	417.574955	1249.70304	-0.035872	-1.4979E-05	-0.042094	-1.7577E-05	-0.077967	-3.2557E-05	417.5749064048473	51.796	0.51531	51.796	51.508	52.023	0					35	18	3	0	0	0	0.42899	1	12071	12071		7.4291	1.1947	1	370710			42450	2516	24493	24494	51831	51831					0.08817330631632103
SGLRLTDTFLK	11	Unmodified	_SGLRLTDTFLK_					0	0	0		ENST00000512009.5_1_5:64960022-64960435:+|nuORF;nc|ENSG00000113597|A5PLN9-2|TRAPPC13;nc|ENSG00000113597|A5PLN9-4|TRAPPC13;ENSG00000113597|ENST00000399438|TRAPPC13;nc|ENSG00000113597|A5PLN9-5|TRAPPC13	ENST00000512009.5_1_5:64960022-64960435:+|nuORF	ENST00000512009.5_1_5:64960022-64960435:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2358093261719	3	417.574955	1249.70304	-0.027135	-1.1331E-05	-0.096302	-4.0213E-05	-0.12344	-5.1544E-05	417.57478952797777	51.889	0.64312	51.888	51.631	52.274	-0.00080872					50	23	3	0	0	0	0.3305	1	12099	12099		9.5301	4.8142	1	352990			42451	2516	24493	24494	51832	51832					0.08817330631632103
SGLRLTDTFLK	11	Unmodified	_SGLRLTDTFLK_					0	0	0		ENST00000512009.5_1_5:64960022-64960435:+|nuORF;nc|ENSG00000113597|A5PLN9-2|TRAPPC13;nc|ENSG00000113597|A5PLN9-4|TRAPPC13;ENSG00000113597|ENST00000399438|TRAPPC13;nc|ENSG00000113597|A5PLN9-5|TRAPPC13	ENST00000512009.5_1_5:64960022-64960435:+|nuORF	ENST00000512009.5_1_5:64960022-64960435:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	417.574955	1249.70304	0.19953	8.3317E-05	-0.55804	-0.00023302	-0.35851	-0.00014971	417.57465814430867	51.74	0.51818	51.786	51.621	52.14	0.046574	-0.037241	-0.00041422	NaN	9.5301	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	408520			42452	2516	24493	24494							0.08817330631632103
SGLSLPVHPDV	11	Unmodified	_SGLSLPVHPDV_					0	0	0		CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant;ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2	CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant	CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.840087890625	2	560.803488	1119.59242	0.45321	0.00025416	0.1401	7.8571E-05	0.59332	0.00033273	560.8040849646404	44.766	0.2932	44.841	44.723	45.016	0.075047					14	10	2	0	0	0	0.32667	1	9927	9927		13.042	3.695	1	106270			42453	88	24494	24495	51833	51833					0.03741110643431966
SGLSLRVLAP	10	Unmodified	_SGLSLRVLAP_					0	0	0			REV__ENSG00000254470|ENST00000532090|AP5B1	REV__ENSG00000254470|ENST00000532090|AP5B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8013916015625	2	506.811116	1011.60768	0.55486	0.00028121	-0.30044	-0.00015227	0.25442	0.00012894	506.8109408915449	37.666	1.1183	37.666	37.259	38.377	0					87	39	3	0	0	0	0.33817	1	7985	7985		14.838	4.0143	1	1379700	+		42454	19236	24495	24496	51834	51834					0.1023402223128187
SGLTVPTSPK	10	Unmodified	_SGLTVPTSPK_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.24847412109375	2	493.779482	985.544411	-0.80564	-0.00039781	0.92378	0.00045614	0.11814	5.8336E-05	493.7799028128188	34.687	0.6937	34.687	34.306	35	0					51	24	3	0	0	0	0.22874	1	6823	6823		37.075	5.8063	1	361350			42455	4916	24496	24497	51835	51835					0.051060367233731085
SGLTVPTSPK	10	Unmodified	_SGLTVPTSPK_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2471923828125	2	493.779482	985.544411	-0.95218	-0.00047017	0.70646	0.00034884	-0.24572	-0.00012133	493.7797942491337	34.578	0.7173	34.653	34.353	35.071	0.075306					48	25	3	0	0	0	0.2541	1	6869	6869		30.703	5.7125	1	311880			42456	4916	24496	24497	51836	51836					0.051060367233731085
SGLTVPTSPK	10	Unmodified	_SGLTVPTSPK_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2472229003906	2	493.779482	985.544411	-0.224	-0.00011061	-0.045236	-2.2337E-05	-0.26924	-0.00013294	493.7795452720117	34.535	0.83784	34.612	34.082	34.92	0.077377					54	29	3	0	0	0	0.14128	1	6825	6825		65.474	12.07	1	318430			42457	4916	24496	24497	51837	51837					0.051060367233731085
SGLVPAAPPK	10	Unmodified	_SGLVPAAPPK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.7786560058594	2	468.779285	935.544017	-0.71708	-0.00033615	0.080591	3.7779E-05	-0.63648	-0.00029837	468.77919190471005	35.214	0.93287	35.214	34.868	35.8	0					68	33	3	0	0	0	0.11961	1	7005	7005		43.772	24.515	1	487300			42458	638	24497	24498	51838	51838					0.07366661794173979
SGLVPAAPPK	10	Unmodified	_SGLVPAAPPK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7786865234375	2	468.779285	935.544017	-0.82804	-0.00038817	0.062494	2.9296E-05	-0.76554	-0.00035887	468.7791949253931	35.063	0.77024	35.138	34.763	35.533	0.075302					63	27	3	0	0	0	0.15473	1	6964	6964		38.176	16.429	1	455210			42459	638	24497	24498	51839	51839					0.07366661794173979
SGLVPAAPPK	10	Unmodified	_SGLVPAAPPK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.77880859375	2	468.779285	935.544017	-0.72687	-0.00034074	-0.032734	-1.5345E-05	-0.7596	-0.00035608	468.77920059365886	35.096	0.7663	35.174	34.729	35.495	0.077381					62	27	3	0	0	0	0.21126	1	6953	6953		31.268	12.011	1	514580			42460	638	24497	24498	51840	51840					0.07366661794173979
SGMEKPLPLR	10	Oxidation (M)	_SGM(Oxidation (M))EKPLPLR_		SGM(1)EKPLPLR		SGM(41)EKPLPLR	0	0	1		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3135375976562	2	572.313166	1142.61178	0.071497	4.0919E-05	0.038083	2.1795E-05	0.10958	6.2714E-05	572.3131445278627	24.528	0.65899	24.49	24.166	24.825	-0.038927					50	22	3	0	0	0	0.13386	1	3757	3757		40.725	31.342	1	274350			42461	7464	24498	24499	51841	51841		826			0.04617743662674911
SGNTYALYV	9	Unmodified	_SGNTYALYV_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7843322753906	2	494.242732	986.470912	0.37974	0.00018768	-0.2452	-0.00012119	0.13454	6.6495E-05	494.2424699066282	57.832	0.52247	57.832	57.552	58.075	0					29	18	2	0	0	0	0.066761	1	13990	13990		65.235	43.488	1	377100			42462	619	24499	24500	51842	51842					-0.022865117191145146
SGNTYALYV	9	Unmodified	_SGNTYALYV_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7843322753906	2	494.242732	986.470912	0.4267	0.00021089	-0.18743	-9.2634E-05	0.23927	0.00011826	494.2425850767431	57.624	0.6801	57.71	57.404	58.084	0.085621					33	24	2	0	0	0	0.040595	1	13947	13947		65.235	36.748	1	345560			42463	619	24499	24500	51843	51843					-0.022865117191145146
SGNTYALYV	9	Unmodified	_SGNTYALYV_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7844543457031	2	494.242732	986.470912	0.37583	0.00018575	-0.13281	-6.5641E-05	0.24301	0.00012011	494.24251505554895	57.884	0.5282	57.867	57.69	58.218	-0.0172					34	19	3	0	0	0	0.040595	1	13997	13997		65.235	42.087	1	332010			42464	619	24499	24500	51844	51844					-0.022865117191145146
SGPDLQRL	8	Unmodified	_SGPDLQRL_					0	0	0		ENST00000510714.1_1_5:466550-472987:-|nuORF;ENST00000510604.1_1_5:471910-473050:-|nuORF;ENST00000342584.3_1_5:472025-473050:-|nuORF	ENST00000510714.1_1_5:466550-472987:-|nuORF	ENST00000510714.1_1_5:466550-472987:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.5728454589844	2	443.243067	884.47158	0.18854	8.3571E-05	-0.16115	-7.1429E-05	0.027394	1.2142E-05	443.24294938867075	30.502	1.1189	30.529	30.075	31.194	0.027946					60	39	2	0	0	0	0.34218	1	5771	5771		9.3474	6.0661	1	731680			42465	9532	24500	24501	51845	51845					0.024723277206248895
SGPDLQRL	8	Unmodified	_SGPDLQRL_					0	0	0		ENST00000510714.1_1_5:466550-472987:-|nuORF;ENST00000510604.1_1_5:471910-473050:-|nuORF;ENST00000342584.3_1_5:472025-473050:-|nuORF	ENST00000510714.1_1_5:466550-472987:-|nuORF	ENST00000510714.1_1_5:466550-472987:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	443.243067	884.47158	0.28261	0.00012526	-0.18051	-8.0011E-05	0.1021	4.5253E-05	443.2429565789529	30.468	0.88391	30.468	30.064	30.948	0	-0.034764	-9.1945E-05	NaN	9.3474	52	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	790450			42466	9532	24500	24501							0.024723277206248895
SGPDLQRL	8	Unmodified	_SGPDLQRL_					0	0	0		ENST00000510714.1_1_5:466550-472987:-|nuORF;ENST00000510604.1_1_5:471910-473050:-|nuORF;ENST00000342584.3_1_5:472025-473050:-|nuORF	ENST00000510714.1_1_5:466550-472987:-|nuORF	ENST00000510714.1_1_5:466550-472987:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	443.243067	884.47158	-0.021711	-9.6232E-06	0.17567	7.7864E-05	0.15396	6.8241E-05	443.2430879939753	30.485	0.70114	30.512	30.109	30.81	0.027157	0.0085042	0.0002238	NaN	9.3474	44	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	748760			42467	9532	24500	24501							0.024723277206248895
SGPGFIRPLA	10	Unmodified	_SGPGFIRPLA_					0	0	0			REV__ENSG00000039523|ENST00000042381|RIPOR1	REV__ENSG00000039523|ENST00000042381|RIPOR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7762451171875	2	507.790184	1013.56581	0.58533	0.00029722	0.072078	3.66E-05	0.6574	0.00033382	507.790125059708	54.303	0.91781	54.303	53.946	54.864	0					92	33	3	0	0	0	0.36786	1	13006	13006		9.3831	0.78985	1	2507900	+		42468	13522	24501	24502	51846	51846					0.05957466542736256
SGPGQAGAQQR	11	Unmodified	_SGPGQAGAQQR_					0	0	0			REV__nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	REV__nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2565307617188	2	528.762686	1055.51082	0.20145	0.00010652	1.862	0.00098457	2.0635	0.0010911	528.7633700159779	14.692	0.16751	14.692	14.561	14.729	0					6	5	2	0	0	0	0.46277	1	800	800		2.9952	0	1	17920	+		42469	16451	24502	24503	51847	51847					-0.014715719958076079
SGPGQAGAQQR	11	Unmodified	_SGPGQAGAQQR_					0	0	0			REV__nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	REV__nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	528.762686	1055.51082	0.20145	0.00010652	1.862	0.00098457	2.0635	0.0010911	528.7633700159779	14.692	0.16751	14.692	14.561	14.729	0	0	0	NaN	2.9952	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17920	+		42470	16451	24502	24503							-0.014715719958076079
SGPLMSPSR	9	Unmodified	_SGPLMSPSR_					0	0	0		ENST00000373596.5_1_9:127023766-127023820:+|nuORF	ENST00000373596.5_1_9:127023766-127023820:+|nuORF	ENST00000373596.5_1_9:127023766-127023820:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7558898925781	2	466.236927	930.459301	-0.22084	-0.00010296	-0.14852	-6.9244E-05	-0.36935	-0.00017221	466.23676800506263	22.787	0.40638	22.787	22.563	22.969	0					19	13	2	0	0	0	0.25323	1	3232	3232		6.2058	0	1	35020			42471	9871	24503	24504	51848	51848					-0.008710320140721706
SGQFIRFSM	9	Unmodified	_SGQFIRFSM_					0	0	0			REV__ENST00000524227.5_1_8:41521223-41521256:-|nuORF	REV__ENST00000524227.5_1_8:41521223-41521256:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2997436523438	2	536.765852	1071.51715	-0.0041862	-2.247E-06	0.46448	0.00024932	0.46029	0.00024707	536.7660548068105	13.672	0.11961	13.573	13.519	13.638	-0.099291					5	3	2	0	0	0	0.26099	1	507	507		2.9952	0	1	13982	+		42472	21938	24504	24505	51849	51849					-0.015747700886549865
SGQRVFVVK	9	Unmodified	_SGQRVFVVK_					0	0	0		ENST00000441173.1_1_7:99751392-99751584:+|nuORF;ENSG00000188186|ENST00000341942|LAMTOR4	ENST00000441173.1_1_7:99751392-99751584:+|nuORF	ENST00000441173.1_1_7:99751392-99751584:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.31610107421875	2	510.303458	1018.59236	0.29044	0.00014821	-0.59713	-0.00030472	-0.30669	-0.0001565	510.3034034363122	24.913	0.45272	24.913	24.639	25.091	0					37	15	3	0	0	0	0.30824	1	3875	3875		7.609	0.88579	1	82946			42473	7736	24505	24506	51850	51850					0.08381155434096854
SGQRVFVVK	9	Unmodified	_SGQRVFVVK_					0	0	0		ENST00000441173.1_1_7:99751392-99751584:+|nuORF;ENSG00000188186|ENST00000341942|LAMTOR4	ENST00000441173.1_1_7:99751392-99751584:+|nuORF	ENST00000441173.1_1_7:99751392-99751584:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.3033142089844	2	510.303458	1018.59236	0.1623	8.2821E-05	-0.46307	-0.0002363	-0.30077	-0.00015348	510.30344128433126	24.942	0.67214	24.886	24.43	25.102	-0.055931					41	23	3	0	0	0	0.25689	1	3916	3916		7.609	0.88579	1	108900			42474	7736	24505	24506	51851	51851					0.08381155434096854
SGRAACRPLQT	11	Unmodified	_SGRAACRPLQT_					0	0	0		ENST00000589683.5_1_17:40912832-40913857:+|nuORF;ENST00000588928.1_1_17:40912832-40913857:+|nuORF	ENST00000589683.5_1_17:40912832-40913857:+|nuORF	ENST00000589683.5_1_17:40912832-40913857:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3040161132812	2	580.303664	1158.59277	0.31875	0.00018497	0.45454	0.00026377	0.77328	0.00044874	580.3039931237787	62.228	0.69622	62.219	61.979	62.675	-0.0085526					61	25	3	0	0	0	0.39284	1	15370	15370		12.175	2.0242	1	646260			42475	12153	24506	24507	51852	51852					0.019822070916234225
SGRFYVVMWK	10	Unmodified	_SGRFYVVMWK_					0	0	0		ENST00000469769.1_1_1:155167034-155167397:-|nuORF;nc|ENSG00000169231|P49746-2|THBS3;ENSG00000169231|ENST00000368378|THBS3	ENST00000469769.1_1_1:155167034-155167397:-|nuORF	ENST00000469769.1_1_1:155167034-155167397:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.88018798828125	3	424.890109	1271.6485	-0.3681	-0.0001564	-0.0028496	-1.2108E-06	-0.37095	-0.00015761	424.89023273916894	14.19	0.8827	14.19	13.962	14.845	0					98	30	5	0	0	0	0.39935	1	721	721		3.5871	2.3722	1	2348300			42476	6339	24507	24508	51853	51853					0.02354040279237779
SGSARLGPV	9	Unmodified	_SGSARLGPV_					0	0	0			REV__ENST00000460019.1_1_1:98320703-98348836:-|nuORF	REV__ENST00000460019.1_1_1:98320703-98348836:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2278137207031	2	422.237784	842.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.117	1	50.138	49.638	50.638	0.020691								0	0	0	0.23852	1	11590	11590		10.074	0	1		+		42477	21197	24508	24509	51854	51854					0.03348345066183356
SGSEIKSYLVR	11	Unmodified	_SGSEIKSYLVR_					0	0	0		nc|ENSG00000188266|A2RU49-2|HYKK;nc|ENSG00000188266|A2RU49-3|HYKK;ENSG00000188266|ENST00000388988|HYKK	nc|ENSG00000188266|A2RU49-2|HYKK	nc|ENSG00000188266|A2RU49-2|HYKK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.56280517578125	3	413.562827	1237.66665	-0.3662	-0.00015145	0.30822	0.00012747	-0.057979	-2.3978E-05	413.56294281319725	39.526	0.8904	39.526	39.242	40.132	0					95	32	4	0	0	0	0.43513	1	8397	8397		6.6235	0.3891	1	1799100			42478	7739	24509	24510	51855	51855					0.05732453734913179
SGSFPLVLK	9	Unmodified	_SGSFPLVLK_					0	0	0		ENSG00000167074|ENST00000266304|TEF	ENSG00000167074|ENST00000266304|TEF	ENSG00000167074|ENST00000266304|TEF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2812805175781	2	474.28166	946.548768	0.26051	0.00012356	-0.89443	-0.00042421	-0.63392	-0.00030066	474.2811058754091	53.386	0.66075	53.386	53.173	53.834	0					55	24	3	0	0	0	0.0024096	1	12594	12594		106.94	54.672	1	1247000			42479	6143	24510	24511	51856	51856					0.07335545936950894
SGSFPLVLK	9	Unmodified	_SGSFPLVLK_					0	0	0		ENSG00000167074|ENST00000266304|TEF	ENSG00000167074|ENST00000266304|TEF	ENSG00000167074|ENST00000266304|TEF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.28070068359375	2	474.28166	946.548768	0.25324	0.00012011	-0.78008	-0.00036998	-0.52684	-0.00024987	474.28119125575876	53.379	0.70261	53.436	53.221	53.923	0.056259					60	26	3	0	0	0	0.0013683	2	12576	12576;12606		118.07	65.8	1	1548200			42480	6143	24510	24511	51857;51858	51857					0.07335545936950894
SGSFPLVLK	9	Unmodified	_SGSFPLVLK_					0	0	0		ENSG00000167074|ENST00000266304|TEF	ENSG00000167074|ENST00000266304|TEF	ENSG00000167074|ENST00000266304|TEF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.28106689453125	2	474.28166	946.548768	0.32553	0.00015439	-0.94493	-0.00044816	-0.6194	-0.00029377	474.281129100717	53.494	0.65413	53.485	53.218	53.872	-0.0096092					56	24	3	0	0	0	0.0013683	1	12604	12604		118.07	65.8	1	1395500			42481	6143	24510	24511	51859	51859					0.07335545936950894
SGSFVVVQK	9	Unmodified	_SGSFVVVQK_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.7687683105469	2	475.768917	949.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.418	1	32.418	31.918	32.918	0								0	0	0	0.00049929	1	6175	6175		103.35	57.333	1				42482	3322	24511	24512	51860	51860					0.04650071414528156
SGSFVVVQK	9	Unmodified	_SGSFVVVQK_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7689208984375	2	475.768917	949.523281	0.2662	0.00012665	0.56916	0.00027079	0.83536	0.00039744	475.76891381078343	32.642	1.0094	32.697	32.136	33.146	0.054375					110	36	4	0	0	0	0.0028626	1	6152	6152		103.35	51.085	1	1108800			42483	3322	24511	24512	51861	51861					0.04650071414528156
SGSHSGETLPL	11	Unmodified	_SGSHSGETLPL_					0	0	0		nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1;ENST00000523387.5_1_8:2986336-3141840:-|nuORF;ENST00000523488.5_1_8:3008913-3253839:-|nuORF;nc|ENSG00000183117|Q96PZ7-4|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	nc|ENSG00000183117|Q96PZ7-2|CSMD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2337646484375	2	542.767103	1083.51965	0.64606	0.00035066	0.12303	6.6777E-05	0.76909	0.00041744	542.7671194625281	20.166	0.58329	20.05	19.67	20.253	-0.11592					30	20	2	0	0	0	0.33149	1	2427	2427		5.2969	0	1	70055			42484	7348	24512	24513	51862	51862					-0.018766431499670944
SGSLTPTESI	10	Unmodified	_SGSLTPTESI_					0	0	0		ENSG00000182606|ENST00000327628|TRAK1;nc|ENSG00000182606|Q9UPV9-2|TRAK1;nc|ENSG00000182606|Q9UPV9-3|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2518310546875	2	496.250754	990.486955	0.40161	0.0001993	0.97403	0.00048337	1.3756	0.00068266	496.25119716347643	24.463	0.83085	24.391	24.151	24.982	-0.072559					55	28	3	0	0	0	0.36786	1	3821	3821		9.3831	0	1	188230			42485	7303	24513	24514	51863	51863					-0.00866850272859665
SGSNVKIVK	9	Unmodified	_SGSNVKIVK_					0	0	0		ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2817687988281	2	466.282192	930.549831	-0.28754	-0.00013407	-0.11646	-5.4304E-05	-0.404	-0.00018838	466.28283785228376	14.996	2.0485	14.996	14.701	16.749	0					214	71	5	0	0	0	0.017549	1	841	841		67.838	6.2363	1	31662000			42486	3136	24514	24515	51864	51864					0.08177760305852644
SGSNVKIVK	9	Unmodified	_SGSNVKIVK_					0	0	0		ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2815246582031	2	466.282192	930.549831	-0.18559	-8.6537E-05	-0.19087	-8.9001E-05	-0.37646	-0.00017554	466.28280256078295	15.077	2.1934	14.968	14.587	16.78	-0.10981					229	76	5	0	0	0	0.027957	1	861	861		61.09	5.8553	1	32501000			42487	3136	24514	24515	51865	51865					0.08177760305852644
SGSNVKIVK	9	Unmodified	_SGSNVKIVK_					0	0	0		ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	ENSG00000124172|ENST00000243997|ATP5F1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.28192138671875	2	466.282192	930.549831	-0.093632	-4.3659E-05	-0.30062	-0.00014018	-0.39426	-0.00018383	466.282724662873	15.098	1.9135	15.033	14.73	16.644	-0.064414					213	65	5	0	0	0	0.032589	1	869	869		59.368	5.9644	1	36378000			42488	3136	24514	24515	51866	51866					0.08177760305852644
SGSPATPLK	9	Unmodified	_SGSPATPLK_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.24017333984375	2	429.239993	856.465432	-0.051817	-2.2242E-05	0.59529	0.00025552	0.54347	0.00023328	429.24012781009185	20.288	1.04	20.288	19.986	21.026	0					80	37	3	0	0	0	0.048637	1	2482	2482		53.404	22.767	1	913500			42489	1088	24515	24516	51867	51867					0.03145809489080875
SGSPATPLK	9	Unmodified	_SGSPATPLK_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.2405090332031	2	429.239993	856.465432	0.16617	7.1327E-05	0.43694	0.00018755	0.60311	0.00025888	429.24004896151365	20.496	0.95943	20.386	20.104	21.063	-0.11003					78	34	3	0	0	0	0.075356	1	2545	2545		63.961	25.987	1	943800			42490	1088	24515	24516	51868	51868					0.03145809489080875
SGSPATPLK	9	Unmodified	_SGSPATPLK_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.2402648925781	2	429.239993	856.465432	0.2549	0.00010941	0.22566	9.6861E-05	0.48056	0.00020627	429.23997600735464	20.413	1.2213	20.36	20.065	21.286	-0.05291					90	43	3	0	0	0	0.051692	1	2509	2509		63.961	27.833	1	918330			42491	1088	24515	24516	51869	51869					0.03145809489080875
SGSTPIIPY	9	Unmodified	_SGSTPIIPY_					0	0	0			REV__nc|ENSG00000171824|Q01780-2|EXOSC10	REV__nc|ENSG00000171824|Q01780-2|EXOSC10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.76373291015625	2	467.74765	933.480748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.948	1	23.909	23.409	24.409	-0.038927								0	0	0	0.21726	1	3600	3600		16.942	0	1		+		42492	17669	24516	24517	51870	51870					0.011346762862899595
SGSTYYNPSLK	11	Unmodified	_SGSTYYNPSLK_					0	0	0		nc|ENSG00000211959|P01824|IGHV4-39;nc|ENSG00000231475|A0A087WSY4|IGHV4-30-2;nc|ENSG00000211952|A0A0C4DH34|IGHV4-28;nc|ENSG00000231475|P0DP07|IGHV4-31	nc|ENSG00000211959|P01824|IGHV4-39;nc|ENSG00000211952|A0A0C4DH34|IGHV4-28	nc|ENSG00000211952|A0A0C4DH34|IGHV4-28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.6228637695312	2	608.79586	1215.57717	0.43377	0.00026408	0.51797	0.00031534	0.95174	0.00057941	608.7961216083444	34.198	0.26183	34.198	34.074	34.336	0					13	8	2	0	0	0	0.3266	1	6741	6741		14.957	9.2253	1	144410			42493	12938;12937	24517	24518	51871	51871					-0.021998009444359923
SGTLFVPLQFK	11	Unmodified	_SGTLFVPLQFK_					0	0	0			REV__nc|ENSG00000196199|Q99549-2|MPHOSPH8	REV__nc|ENSG00000196199|Q99549-2|MPHOSPH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.56280517578125	3	412.904413	1235.69141	0.18827	7.7736E-05	-2.6837	-0.0011081	-2.4954	-0.0010304	412.9031042024056	39.432	0.28107	39.532	39.424	39.705	0.099407					16	9	2	0	0	0	0.33122	1	8301	8301		1.1098	0.54658	1	128220	+		42494	23146	24518	24519	51872	51872					0.08299133608306875
SGVLEDEEDGD	11	Unmodified	_SGVLEDEEDGD_					0	0	0			REV__DPP6|p.R457Ifs*40|1|0.07|ENSG00000130226|chr7:154801422-154801423|-/AATT|frameshift_variant;REV__ENSG00000130226|ENST00000377770|DPP6	REV__DPP6|p.R457Ifs*40|1|0.07|ENSG00000130226|chr7:154801422-154801423|-/AATT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3447875976562	2	582.73058	1163.44661	0.28357	0.00016525	-0.93377	-0.00054413	-0.65019	-0.00037889	582.7299348364065	56.999	0.24415	57.078	56.959	57.203	0.078674					13	8	2	0	0	0	0.33119	1	13752	13752		5.7319	0.97584	1	140680	+		42495	13304;15443	24519	24520	51873	51873					-0.1285786145392649
SGVLSHSQSL	10	Unmodified	_SGVLSHSQSL_					0	0	0			REV__ENST00000485832.1_1_7:128446807-128447827:+|nuORF	REV__ENST00000485832.1_1_7:128446807-128447827:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7641296386719	2	507.764363	1013.51417	0.47858	0.000243	-0.57436	-0.00029164	-0.095787	-4.8637E-05	507.76380629438665	64.592	1.4192	64.592	63.771	65.19	0					106	51	3	0	0	0	0.22295	1	16014	16014		29.841	2.2118	1	624040	+		42496	21547	24520	24521	51874	51874					0.007956780581821477
SGWGSWEKRK	10	Unmodified	_SGWGSWEKRK_					0	0	0		ENST00000281031.4_2_11:77790996-77791257:-|nuORF	ENST00000281031.4_2_11:77790996-77791257:-|nuORF	ENST00000281031.4_2_11:77790996-77791257:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.2259216308594	3	407.543878	1219.60981	-0.30416	-0.00012396	-0.063327	-2.5808E-05	-0.36748	-0.00014977	407.54393509005547	24.798	1.3681	24.767	24.456	25.824	-0.031408					178	47	5	0	0	0	0.34155	1	3891	3891		14.218	2.0434	1	2817900			42497	9117	24521	24522	51875	51875					0.008784509690713094
SGYEGRVPLK	10	Unmodified	_SGYEGRVPLK_					0	0	0		nc|ENSG00000090530|Q8IVL5-2|P3H2;ENSG00000090530|ENST00000319332|P3H2	nc|ENSG00000090530|Q8IVL5-2|P3H2	nc|ENSG00000090530|Q8IVL5-2|P3H2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.28466796875	2	553.303655	1104.59276	0.16977	9.3932E-05	2.9479	0.0016311	3.1177	0.001725	553.3041983341192	27.367	0.26659	27.367	27.294	27.561	0					19	8	3	0	0	0	0.34887	1	4638	4638		12.873	6.6668	1	124150			42498	1381	24522	24523	51876	51876					0.04464530363270569
SGYFKQFQK	9	Unmodified	_SGYFKQFQK_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.P1391Qfs*3|1|0.19|ENSG00000117523|chr1:171541644-171541648|CAAGA/-|frameshift_variant;PRRC2C|p.I2096Ffs*11|1|0.06|ENSG00000117523|chr1:171566405-171566406|-/ATTCT|frameshift_variant;PRRC2C|p.I863Kfs*12|1|0.09|ENSG00000117523|chr1:171540060-171540063|TCAG/-|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.7936401367188	2	566.792924	1131.57129	0.084126	4.7682E-05	0.61966	0.00035122	0.70379	0.0003989	566.7931142813809	31.249	0.63794	31.249	30.889	31.526	0					53	22	3	0	0	0	0.0028542	2	5780	5780;5842		103.42	74.338	1	388170			42499	12673	24523	24524	51877;51878	51877					0.01077145334556917
SGYFKQFQK	9	Unmodified	_SGYFKQFQK_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.P1391Qfs*3|1|0.19|ENSG00000117523|chr1:171541644-171541648|CAAGA/-|frameshift_variant;PRRC2C|p.I2096Ffs*11|1|0.06|ENSG00000117523|chr1:171566405-171566406|-/ATTCT|frameshift_variant;PRRC2C|p.I863Kfs*12|1|0.09|ENSG00000117523|chr1:171540060-171540063|TCAG/-|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.7927856445312	2	566.792924	1131.57129	0.098736	5.5963E-05	0.67771	0.00038412	0.77645	0.00044009	566.793134530358	31.25	0.57796	31.292	30.996	31.574	0.042364					56	20	4	0	0	0	0.0010463	1	5795	5795		122.18	74.431	1	513110			42500	12673	24523	24524	51879	51879					0.01077145334556917
SGYFKQFQK	9	Unmodified	_SGYFKQFQK_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2C|p.P1391Qfs*3|1|0.19|ENSG00000117523|chr1:171541644-171541648|CAAGA/-|frameshift_variant;PRRC2C|p.I2096Ffs*11|1|0.06|ENSG00000117523|chr1:171566405-171566406|-/ATTCT|frameshift_variant;PRRC2C|p.I863Kfs*12|1|0.09|ENSG00000117523|chr1:171540060-171540063|TCAG/-|frameshift_variant	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.7931518554688	2	566.792924	1131.57129	0.18806	0.00010659	0.45124	0.00025576	0.63931	0.00036236	566.7929600008512	31.112	0.62782	31.153	30.907	31.535	0.040991					54	22	3	0	0	0	5.0285E-07	1	5765	5765		160.52	108.25	1	553160			42501	12673	24523	24524	51880	51880					0.01077145334556917
SGYHSLCHP	9	Unmodified	_SGYHSLCHP_					0	0	0		ENSG00000198846|ENST00000361421|TOX	ENSG00000198846|ENST00000361421|TOX	ENSG00000198846|ENST00000361421|TOX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3035583496094	2	500.718901	999.42325	0.25806	0.00012921	0.37517	0.00018786	0.63323	0.00031707	501.22048770627356	19.797	0.41215	19.797	19.574	19.986	0					32	14	3	0	0	0	0.26145	1	2374	2374		2.0598	0.21551	1	52783			42502	8142	24524	24525	51881	51881					-0.07648489190933105
SGYRRPEFTVL	11	Unmodified	_SGYRRPEFTVL_					0	0	0			REV__ENSG00000132740|ENST00000255078|IGHMBP2	REV__ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.2383728027344	3	442.238455	1323.69353	0.047772	2.1127E-05	-0.09739	-4.307E-05	-0.049618	-2.1943E-05	442.23833225988807	31.082	0.53148	31.082	30.862	31.394	0					45	18	3	0	0	0	0.42582	1	5772	5772		7.846	4.0001	1	282180	+		42503	15586	24525	24526	51882	51882					0.044635623461317664
SGYRRPEFTVL	11	Unmodified	_SGYRRPEFTVL_					0	0	0			REV__ENSG00000132740|ENST00000255078|IGHMBP2	REV__ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.5728454589844	3	442.238455	1323.69353	-0.1112	-4.9177E-05	-0.19424	-8.5899E-05	-0.30544	-0.00013508	442.238244899966	31.066	0.57634	31.094	30.924	31.501	0.027946					45	20	3	0	0	0	0.40129	1	5771	5771		11.065	6.6591	1	399230	+		42504	15586	24525	24526	51883	51883					0.044635623461317664
SGYRRPEFTVL	11	Unmodified	_SGYRRPEFTVL_					0	0	0			REV__ENSG00000132740|ENST00000255078|IGHMBP2	REV__ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	442.238455	1323.69353	0.047772	2.1127E-05	-0.09739	-4.307E-05	-0.049618	-2.1943E-05	442.23833225988807	31.082	0.53148	31.082	30.862	31.394	0	0.0073209	1.2334E-05	NaN	11.065	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282180	+		42505	15586	24525	24526							0.044635623461317664
SGYRRPEFTVL	11	Unmodified	_SGYRRPEFTVL_					0	0	0			REV__ENSG00000132740|ENST00000255078|IGHMBP2	REV__ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	442.238455	1323.69353	-0.1112	-4.9177E-05	-0.19424	-8.5899E-05	-0.30544	-0.00013508	442.238244899966	31.066	0.57634	31.094	30.924	31.501	0.027946	0.019816	-0.00011615	NaN	11.065	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399230	+		42506	15586	24525	24526							0.044635623461317664
SGYRRPEFTVL	11	Unmodified	_SGYRRPEFTVL_					0	0	0			REV__ENSG00000132740|ENST00000255078|IGHMBP2	REV__ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	442.238455	1323.69353	0.12097	5.3496E-05	-0.038465	-1.7011E-05	0.082502	3.6486E-05	442.23825934171833	31.02	0.54391	31.047	30.836	31.38	0.027157	-0.027137	9.0511E-05	NaN	11.065	54	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372280	+		42507	15586	24525	24526							0.044635623461317664
SGYSRFQFLFT	11	Unmodified	_SGYSRFQFLFT_					0	0	0		ENST00000271417.7_1_1:166883354-166883594:-|nuORF	ENST00000271417.7_1_1:166883354-166883594:-|nuORF	ENST00000271417.7_1_1:166883354-166883594:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.62469482421875	3	451.559305	1351.65609	0.099929	4.5124E-05	-0.8401	-0.00037935	-0.74017	-0.00033423	451.55875624097524	42.392	0.76463	42.477	42.266	43.03	0.085197					55	27	3	0	0	0	0.33158	1	9168	9168		7.0341	5.579	1	893240			42508	9083	24526	24527	51884	51884					-0.005675289194869038
SHAVKGAR	8	Unmodified	_SHAVKGAR_					0	0	0			REV__ENST00000560141.2_1_15:45021411-45021504:+|nuORF	REV__ENST00000560141.2_1_15:45021411-45021504:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2380676269531	2	413.238119	824.461684	0.0048023	1.9845E-06	0.038511	1.5914E-05	0.043314	1.7899E-05	413.23804298304435	67.148	3.9637	67.148	65.768	69.732	0					217	142	2	0	0	0	0.45307	1	16940	16940		4.756	4.756	1	492550	+		42509	22293	24527	24528	51885	51885					0.04243184505901354
SHAVKGAR	8	Unmodified	_SHAVKGAR_					0	0	0			REV__ENST00000560141.2_1_15:45021411-45021504:+|nuORF	REV__ENST00000560141.2_1_15:45021411-45021504:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2378234863281	2	413.238119	824.461684	0.30416	0.00012569	-0.11551	-4.7733E-05	0.18865	7.7956E-05	413.2379925185633	66.279	2.0512	66.363	65.699	67.75	0.083832					129	73	2	0	0	0	0.45307	1	16869	16869		4.756	4.756	1	565640	+		42510	22293	24527	24528	51886	51886					0.04243184505901354
SHAVKGAR	8	Unmodified	_SHAVKGAR_					0	0	0			REV__ENST00000560141.2_1_15:45021411-45021504:+|nuORF	REV__ENST00000560141.2_1_15:45021411-45021504:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2377624511719	2	413.238119	824.461684	0.3056	0.00012628	-0.52198	-0.0002157	-0.21638	-8.9418E-05	413.23776678259657	68.037	2.13	68.115	67.546	69.676	0.078049					115	76	3	0	0	0	0.45307	1	17192	17192		4.756	2.1785	1	565240	+		42511	22293	24527	24528	51887	51887					0.04243184505901354
SHDFVLRMNK	10	Unmodified	_SHDFVLRMNK_					0	0	0		ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.58209228515625	3	416.216885	1245.62883	0.23721	9.8733E-05	-2.72	-0.0011321	-2.4827	-0.0010334	416.2158810136307	23.679	0.34661	23.64	23.364	23.711	-0.038927					16	11	2	0	0	0	0.3183	1	3457	3457		8.4443	2.2525	1	30832			42512	399	24528	24529	51888	51888					0.015836642684917024
SHDFVLRMNK	10	Unmodified	_SHDFVLRMNK_					0	0	0		ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	416.216885	1245.62883	0.10959	4.5613E-05	-2.4101	-0.0010031	-2.3005	-0.00095751	416.2158288721585	23.549	0.10818	23.477	23.422	23.53	-0.072559	-0.081372	0.00020685	NaN	8.4443	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26992			42513	399	24528	24529							0.015836642684917024
SHDKEMILWR	10	Unmodified	_SHDKEMILWR_					0	0	0			REV__ENST00000479761.1_1_7:102768884-102769223:-|nuORF	REV__ENST00000479761.1_1_7:102768884-102769223:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.2028503417969	3	438.89229	1313.65504	-0.29445	-0.00012923	-0.36669	-0.00016094	-0.66114	-0.00029017	439.22553622493234	18.624	0.11704	18.566	18.483	18.6	-0.058174					5	3	2	0	0	0	0.32137	1	1988	1988		1.7423	0.89733	1	32490	+		42514	16934	24529	24530	51889	51889					0.010759334399608633
SHGGGGPA	8	Unmodified	_SHGGGGPA_					0	0	0		ENST00000525371.1_1_8:145542526-145550314:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF;ENSG00000185000|ENST00000528718|DGAT1	ENST00000525371.1_1_8:145542526-145550314:-|nuORF	ENST00000525371.1_1_8:145542526-145550314:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	639.2842407226562	1	639.284514	638.277237	0.62605	0.00040022	-1.1456	-0.00073233	-0.5195	-0.00033211	639.2839240531504	82.895	1.1873	82.968	82.24	83.427	0.073097					67	46	2	0	0	0	0.46491	1	21739	21739		0.69038	0	1	286050			42515	7493	24530	24531	51890	51890					-0.05637003644676497
SHGGGGPA	8	Unmodified	_SHGGGGPA_					0	0	0		ENST00000525371.1_1_8:145542526-145550314:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF;ENSG00000185000|ENST00000528718|DGAT1	ENST00000525371.1_1_8:145542526-145550314:-|nuORF	ENST00000525371.1_1_8:145542526-145550314:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		1	639.284514	638.277237	0.56557	0.00036156	-1.1212	-0.00071675	-0.55561	-0.00035519	639.2837313082726	83.016	1.1138	83.016	82.313	83.427	0	0.047262	-2.2667E-05	NaN	0.69038	62	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296090			42516	7493	24530	24531							-0.05637003644676497
SHGGGGPA	8	Unmodified	_SHGGGGPA_					0	0	0		ENST00000525371.1_1_8:145542526-145550314:-|nuORF;ENST00000531896.5_1_8:145541583-145550314:-|nuORF;ENSG00000185000|ENST00000528718|DGAT1	ENST00000525371.1_1_8:145542526-145550314:-|nuORF	ENST00000525371.1_1_8:145542526-145550314:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		1	639.284514	638.277237	0.70855	0.00045297	-0.98334	-0.00062863	-0.27479	-0.00017567	639.2838816998838	82.942	1.2934	82.921	82.346	83.639	-0.020584	-0.047153	6.5453E-05	NaN	0.69038	69	51	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299800			42517	7493	24530	24531							-0.05637003644676497
SHGILQQL	8	Unmodified	_SHGILQQL_					0	0	0		ENST00000261655.8_1_12:130882112-130882280:-|nuORF	ENST00000261655.8_1_12:130882112-130882280:-|nuORF	ENST00000261655.8_1_12:130882112-130882280:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2544250488281	2	448.253434	894.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.824	1	75.824	75.324	76.324	0								0	0	0	0.27914	1	19498	19498		32.117	0	1				42518	8972	24531	24532	51891	51891					0.04084918100284085
SHGILQQL	8	Unmodified	_SHGILQQL_					0	0	0		ENST00000261655.8_1_12:130882112-130882280:-|nuORF	ENST00000261655.8_1_12:130882112-130882280:-|nuORF	ENST00000261655.8_1_12:130882112-130882280:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.2540588378906	2	448.253434	894.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.851	1	75.905	75.405	76.405	0.053413								0	0	0	0.23984	1	19499	19499		38.151	6.0342	1				42519	8972	24531	24532	51892	51892					0.04084918100284085
SHGILQQL	8	Unmodified	_SHGILQQL_					0	0	0		ENST00000261655.8_1_12:130882112-130882280:-|nuORF	ENST00000261655.8_1_12:130882112-130882280:-|nuORF	ENST00000261655.8_1_12:130882112-130882280:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.25421142578125	2	448.253434	894.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.846	1	75.814	75.314	76.314	-0.031487								0	0	0	0.27914	1	19492	19492		32.117	0	1				42520	8972	24531	24532	51893	51893					0.04084918100284085
SHGRLLPLFIC	11	Unmodified	_SHGRLLPLFIC_					0	0	0			REV__ENSG00000164930|ENST00000358755|FZD6	REV__ENSG00000164930|ENST00000358755|FZD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.38330078125	2	628.352625	1254.6907	0.37292	0.00023433	-3.8223	-0.0024018	-3.4494	-0.0021674	628.350152315383	82.683	0.197	82.662	82.497	82.694	-0.020584					10	7	2	0	0	0	0.33318	1	21531	21531		1.3295	0.80477	1	116680	+		42521	17190	24532	24533	51894	51894					0.07354015687633364
SHHYSGYPPPA	11	Unmodified	_SHHYSGYPPPA_					0	0	0		ENST00000590846.1_1_18:31804054-31804756:-|nuORF;ENST00000588355.1_1_18:31804054-31804846:-|nuORF	ENST00000590846.1_1_18:31804054-31804756:-|nuORF	ENST00000590846.1_1_18:31804054-31804756:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5526123046875	3	404.8526	1211.53597	-0.31014	-0.00012556	1.7323	0.00070132	1.4222	0.00057576	404.8535748533341	22.649	0.81214	22.562	22.296	23.108	-0.087608					66	28	4	0	0	0	0.32843	1	3161	3161		1.3296	0.63198	1	133360			42522	12145	24533	24534	51895	51895					-0.061335171932341837
SHKERLSILR	10	Unmodified	_SHKERLSILR_					0	0	0		ENST00000563680.1_1_16:30004823-30006585:-|nuORF;nc|ENSG00000149929|Q9BW71-2|HIRIP3;ENSG00000149929|ENST00000279392|HIRIP3	ENST00000563680.1_1_16:30004823-30006585:-|nuORF	ENST00000563680.1_1_16:30004823-30006585:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8692016601562	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.9	1	118.92	118.42	119.42	0.026253								0	0	0	0.37807	1	30773	30773		2.9952	0.49676	1				42523	4898	24534	24535	51896	51896					0.11614974819940471
SHKLNKYK	8	Unmodified	_SHKLNKYK_					0	0	0			REV__ENST00000318607.9_1_8:101715273-101715342:-|nuORF	REV__ENST00000318607.9_1_8:101715273-101715342:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7795715332031	2	509.295633	1016.57671	0.0084185	4.2875E-06	-3.0693	-0.0015632	-3.0609	-0.0015589	509.2934349105122	12.089	0.14834	11.992	11.905	12.053	-0.096607					13	7	2	0	0	0	0.34414	1	5	5		2.0598	0	1	28447	+		42524	19951	24535	24536	51897	51897					0.06908868917037125
SHLSEKDSLSL	11	Unmodified	_SHLSEKDSLSL_					0	0	0			REV__nc|ENSG00000085276|Q03112-5|MECOM	REV__nc|ENSG00000085276|Q03112-5|MECOM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.55255126953125	3	405.878704	1214.61428	-0.1699	-6.8959E-05	-0.21933	-8.902E-05	-0.38923	-0.00015798	405.87863870694036	22.093	0.54473	22.093	21.845	22.39	0					27	11	3	0	0	0	0.32824	1	3111	3111		6.2344	0	1	75847	+		42525	13957	24536	24537	51898	51898					0.015558706013507617
SHLWSCVF	8	Unmodified	_SHLWSCVF_					0	0	0			REV__ENSG00000153246|ENST00000283243|PLA2R1	REV__ENSG00000153246|ENST00000283243|PLA2R1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.26324462890625	2	489.728738	977.442923	0.73386	0.00035939	2.2023	0.0010785	2.9361	0.0014379	489.7314135393668	78.611	0.45204	78.581	78.37	78.822	-0.030434					27	16	3	0	0	0	0.33245	1	20365	20365		19.439	2.4967	1	213650	+		42526	16619	24537	24538	51899	51899					-0.04670113180179669
SHMSHDFF	8	Unmodified	_SHMSHDFF_					0	0	0			REV__ENSG00000186908|ENST00000426126|ZDHHC17	REV__ENSG00000186908|ENST00000426126|ZDHHC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2059326171875	2	504.205627	1006.3967	0.73185	0.000369	0.36882	0.00018596	1.1007	0.00055496	504.2057922783198	77.787	1.462	77.787	77.444	78.906	0					128	54	5	0	0	0	0.4397	1	20094	20094		9.3474	3.587	1	1649800	+		42527	18479	24538	24539	51900	51900					-0.10624178082252911
SHMSHDFF	8	Unmodified	_SHMSHDFF_					0	0	0			REV__ENSG00000186908|ENST00000426126|ZDHHC17	REV__ENSG00000186908|ENST00000426126|ZDHHC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2060852050781	2	504.205627	1006.3967	0.68268	0.00034421	0.0044369	2.2371E-06	0.68712	0.00034645	504.2057650543032	77.766	0.90321	77.822	77.456	78.359	0.055412					119	32	6	0	0	0	0.42758	3	20084	20036;20084;20134		13.508	9.3474	1	1869300	+		42528	18479	24538	24539	51901;51902;51903	51902					-0.10624178082252911
SHMSHDFF	8	Unmodified	_SHMSHDFF_					0	0	0			REV__ENSG00000186908|ENST00000426126|ZDHHC17	REV__ENSG00000186908|ENST00000426126|ZDHHC17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2060241699219	2	504.205627	1006.3967	0.8342	0.00042061	0.18605	9.3809E-05	1.0203	0.00051442	504.20573782305115	77.839	1.1748	77.807	77.482	78.657	-0.031334					70	43	2	0	0	0	0.42446	2	20147	20049;20147		14.582	8.2276	1	1819500	+		42529	18479	24538	24539	51904;51905	51905					-0.10624178082252911
SHMSHDFF	8	Unmodified	_SHMSHDFF_					0	0	0			REV__ENSG00000186908|ENST00000426126|ZDHHC17	REV__ENSG00000186908|ENST00000426126|ZDHHC17	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	504.205627	1006.3967	0.8342	0.00042061	0.18605	9.3809E-05	1.0203	0.00051442	504.20573782305115	77.839	1.1748	77.807	77.482	78.657	-0.031334	0.0021124	-3.2723E-05	NaN	14.582	70	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1819500	+		42530	18479	24538	24539							-0.10624178082252911
SHPSSSNTVKK	11	Unmodified	_SHPSSSNTVKK_					0	0	0		nc|ENSG00000148143|Q96JM2-3|ZNF462;ENSG00000148143|ENST00000277225|ZNF462	nc|ENSG00000148143|Q96JM2-3|ZNF462	nc|ENSG00000148143|Q96JM2-3|ZNF462	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.306884765625	2	586.306926	1170.5993	0.083448	4.8926E-05	-0.51379	-0.00030124	-0.43034	-0.00025231	586.3067540752902	17.89	0.75162	17.773	17.515	18.267	-0.11739					68	25	4	0	0	0	0.45108	1	1786	1786		4.5289	0.19963	1	563220			42531	4792	24539	24540	51906	51906					0.020824235239842892
SHQISELQPSL	11	Unmodified	_SHQISELQPSL_					0	0	0		ENST00000592992.1_1_19:38895920-38896347:+|nuORF	ENST00000592992.1_1_19:38895920-38896347:+|nuORF	ENST00000592992.1_1_19:38895920-38896347:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.54974365234375	3	413.550698	1237.63027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.946	1	19.83	19.33	20.33	-0.11592								0	0	0	0.36137	1	2390	2390		2.6312	0	1				42532	12206	24540	24541	51907	51907					0.020955768382464157
SHQSFIMR	8	Unmodified	_SHQSFIMR_					0	0	0			REV__ENST00000354752.5_1_9:99922575-99942308:-|nuORF	REV__ENST00000354752.5_1_9:99922575-99942308:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.77191162109375	2	503.250369	1004.48618	0.16215	8.1603E-05	-0.23729	-0.00011942	-0.075143	-3.7816E-05	503.25179126078115	25.067	0.3927	25.011	24.888	25.281	-0.055931					16	13	2	0	0	0	0.34294	1	3947	3947		3.9444	0.3479	1	29623	+		42533	20177	24541	24542	51908	51908					-0.015879234028716382
SHRKPSRLLT	10	Unmodified	_SHRKPSRLLT_					0	0	0			REV__nc|ENSG00000106868|Q6UWL2-3|SUSD1	REV__nc|ENSG00000106868|Q6UWL2-3|SUSD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8572998046875	2	597.856921	1193.69929	0.45924	0.00027456	-0.13493	-8.067E-05	0.32431	0.00019389	597.8568706905814	91.523	0.5671	91.523	91.279	91.846	0					61	42	2	0	0	0	0.40106	1	24299	24299		3.2813	1.6287	1	91550	+		42534	14538	24542	24543	51909	51909					0.11018705648461946
SHRKPSRLLT	10	Unmodified	_SHRKPSRLLT_					0	0	0			REV__nc|ENSG00000106868|Q6UWL2-3|SUSD1	REV__nc|ENSG00000106868|Q6UWL2-3|SUSD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8583984375	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.163	1	91.253	90.753	91.753	0.090668								0	0	0	0.37157	1	24185	24185		5.7319	1.7875	1		+		42535	14538	24542	24543	51910	51910					0.11018705648461946
SHRKPSRLLT	10	Unmodified	_SHRKPSRLLT_					0	0	0			REV__nc|ENSG00000106868|Q6UWL2-3|SUSD1	REV__nc|ENSG00000106868|Q6UWL2-3|SUSD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8568115234375	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.38	1	91.38	90.88	91.88	0.00046539								0	0	0	0.35611	1	24253	24253		12.241	6.5088	1		+		42536	14538	24542	24543	51911	51911					0.11018705648461946
SHRKSGEILKI	11	Unmodified	_SHRKSGEILKI_					0	0	0			REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3782348632812	2	634.377686	1266.74082	-0.065487	-4.1543E-05	0.0098966	6.2782E-06	-0.05559	-3.5265E-05	634.377935476657	103.22	0.64703	103.22	102.87	103.51	0					264	93	4	0	0	0	0.44828	2	27355	27355;27476		4.897	1.9018	1	46142000	+		42537	14220	24543	24544	51912;51913	51912					0.11811841617145546
SHRKSGEILKI	11	Unmodified	_SHRKSGEILKI_					0	0	0			REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3773193359375	2	634.377686	1266.74082	-0.065239	-4.1386E-05	-0.10892	-6.9098E-05	-0.17416	-0.00011048	634.3778659788805	103.61	1.2562	103.61	103.51	104.77	0					365	174	4	0	0	0	0.42346	5	27622	27562;27622;27672;27684;27707		8.1555	3.2585	1	44719000	+		42538	14220	24543	24544	51914;51915;51916;51917;51918	51915					0.11811841617145546
SHRKSGEILKI	11	Unmodified	_SHRKSGEILKI_					0	0	0			REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3775634765625	2	634.377686	1266.74082	0.22787	0.00014455	-0.18084	-0.00011472	0.047024	2.9831E-05	634.3777797867066	103.27	1.9164	103.27	102.78	104.7	0.0082703					426	271	3	0	0	0	0.42346	10	27682	27349;27352;27415;27469;27588;27620;27682;27707;27713;27740		8.1555	4.0125	1	38547000	+		42539	14220	24543	24544	51919;51920;51921;51922;51923;51924;51925;51926;51927;51928	51925					0.11811841617145546
SHRKSGEILKI	11	Unmodified	_SHRKSGEILKI_					0	0	0			REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3782958984375	2	634.377686	1266.74082	0.46085	0.00029236	-0.68289	-0.00043321	-0.22203	-0.00014085	634.3780412803046	105.8	0.50414	105.8	105.47	105.98	0.0031738					124	71	2	0	0	0	0.45367	1	28061	28061		4.1895	0.90819	1	170440	+		42540	14220	24543	24544	51929	51929					0.11811841617145546
SHRKSGEILKI	11	Unmodified	_SHRKSGEILKI_					0	0	0			REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3770751953125	2	634.377686	1266.74082	0.46564	0.00029539	-0.30836	-0.00019561	0.15728	9.9775E-05	634.3777273387699	111.49	0.77818	111.5	111.37	112.14	0.01152					197	98	3	0	0	0	0.47825	1	29075	29075		0.96228	0.56156	1	308080	+		42541	14220	24543	24544	51930	51930					0.11811841617145546
SHRKSGEILKI	11	Unmodified	_SHRKSGEILKI_					0	0	0			REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	REV__ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3739013671875	2	634.377686	1266.74082	0.45981	0.00029169	-0.73719	-0.00046766	-0.27738	-0.00017597	634.3778945399409	112.94	0.71867	112.95	112.58	113.3	0.014824					129	86	2	0	0	0	0.46655	1	29312	29312		2.4985	1.0166	1	59766	+		42542	14220	24543	24544	51931	51931					0.11811841617145546
SHRLHLLHRE	10	Unmodified	_SHRLHLLHRE_					0	0	0			REV__ENST00000485689.1_1_1:32682456-32683010:-|nuORF	REV__ENST00000485689.1_1_1:32682456-32683010:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.3438720703125	2	649.365444	1296.71634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.28	1	104.28	103.78	104.78	0.0011444								0	0	0	0.38166	1	27719	27719		1.4819	0	1		+		42543	21545	24544	24545	51932	51932					0.07984626254256
SHRLPNLKRK	10	Unmodified	_SHRLPNLKRK_					0	0	0			REV__ENAM|p.S143Yfs*135|1|0.16|ENSG00000132464|chr4:70634525-70634525|C/-|frameshift_variant	REV__ENAM|p.S143Yfs*135|1|0.16|ENSG00000132464|chr4:70634525-70634525|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.9143981933594	3	416.926434	1247.75747	-0.17023	-7.0972E-05	0.12257	5.1104E-05	-0.047653	-1.9868E-05	416.9265770759378	16.231	0.79016	16.231	15.816	16.606	0					32	27	2	0	0	0	0.4022	1	1308	1308		3.0723	0.78949	1	25046	+		42544	13311	24545	24546	51933	51933					0.14350387293734457
SHRPLGAKRYQ	11	Unmodified	_SHRPLGAKRYQ_					0	0	0			REV__nc|ENSG00000145864|P47870-1|GABRB2	REV__nc|ENSG00000145864|P47870-1|GABRB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.24749755859375	3	438.245944	1311.716	0.033396	1.4636E-05	2.3679	0.0010377	2.4013	0.0010524	438.24778794905154	20.153	3.071	20.153	19.375	22.446	0					357	110	6	0	0	0	0.083775	3	2540	2413;2540;2583		43.477	16.348	1	43795000	+		42545	16314	24546	24547	51934;51935;51936	51935					0.07261206534440134
SHRPLGAKRYQ	11	Unmodified	_SHRPLGAKRYQ_					0	0	0			REV__nc|ENSG00000145864|P47870-1|GABRB2	REV__nc|ENSG00000145864|P47870-1|GABRB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2480773925781	3	438.245944	1311.716	0.25545	0.00011195	2.1819	0.00095621	2.4374	0.0010682	438.24771940636884	20.395	2.2696	20.285	19.818	22.088	-0.11003					315	81	6	0	0	0	0.088648	3	2561	2441;2561;2605		42.068	22.081	1	42817000	+		42546	16314	24546	24547	51937;51938;51939	51938					0.07261206534440134
SHRSRRLKRS	10	Unmodified	_SHRSRRLKRS_					0	0	0			REV__ENST00000520674.5_1_5:141016607-141016847:+|nuORF	REV__ENST00000520674.5_1_5:141016607-141016847:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8834228515625	2	641.881793	1281.74903	-0.017622	-1.1311E-05	1.371	0.00087999	1.3533	0.00086868	641.8826902814367	100.87	0.24463	100.87	100.82	101.07	0					48	34	2	0	0	0	0.41701	1	26952	26952		0.35063	0.35063	1	93243	+		42547	21888	24547	24548	51940	51940					0.11942833377111128
SHRVLVAHYVL	11	Unmodified	_SHRVLVAHYVL_					0	0	0		RECK|p.C724Vfs*109|1|0.15|ENSG00000122707|chr9:36117092-36117092|T/-|frameshift_variant	RECK|p.C724Vfs*109|1|0.15|ENSG00000122707|chr9:36117092-36117092|T/-|frameshift_variant	RECK|p.C724Vfs*109|1|0.15|ENSG00000122707|chr9:36117092-36117092|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.371826171875	2	647.374946	1292.73534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.148	1	98.148	97.648	98.648	0								0	0	0	0.37382	1	26255	26255		2.9952	0.49676	1				42548	13061	24548	24549	51941	51941					0.10068162825314175
SHSLGLSHGLE	11	Unmodified	_SHSLGLSHGLE_					0	0	0			REV__ENSG00000196611|ENST00000315274|MMP1	REV__ENSG00000196611|ENST00000315274|MMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.7881469726562	2	568.78837	1135.56219	-0.037603	-2.1388E-05	0.29236	0.00016629	0.25475	0.0001449	568.7884986891422	15.177	0.4906	15.177	14.981	15.471	0					35	16	3	0	0	0	0.32996	1	941	941		8.1555	0.8663	1	155540	+		42549	18667	24549	24550	51942	51942					-0.0001724802177704987
SHSLGLSHGLE	11	Unmodified	_SHSLGLSHGLE_					0	0	0			REV__ENSG00000196611|ENST00000315274|MMP1	REV__ENSG00000196611|ENST00000315274|MMP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.7881469726562	2	568.78837	1135.56219	0.15598	8.8718E-05	-0.023256	-1.3228E-05	0.13272	7.549E-05	568.7882801030916	15.286	0.77566	15.177	15.01	15.786	-0.10982					47	26	3	0	0	0	0.44523	1	986	986		5.2969	0.39987	1	108230	+		42550	18667	24549	24550	51943	51943					-0.0001724802177704987
SHSLGLSHGLE	11	Unmodified	_SHSLGLSHGLE_					0	0	0			REV__ENSG00000196611|ENST00000315274|MMP1	REV__ENSG00000196611|ENST00000315274|MMP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	568.78837	1135.56219	0.15598	8.8718E-05	-0.023256	-1.3228E-05	0.13272	7.549E-05	568.7882801030916	15.286	0.77566	15.177	15.01	15.786	-0.10982	-0.027209	-0.00013408	NaN	8.1555	47	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108230	+		42551	18667	24549	24550							-0.0001724802177704987
SHSPHGEEYSL	11	Unmodified	_SHSPHGEEYSL_					0	0	0			REV__ENSG00000060749|ENST00000650167|QSER1	REV__ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.2095947265625	3	414.851036	1241.53128	0.41787	0.00017335	1.642	0.00068117	2.0598	0.00085452	415.1859561838556	26.722	0.34712	26.705	26.444	26.791	-0.017015					16	11	2	0	0	0	0.33119	1	4409	4409		2.6312	0	1	30722	+		42552	13621	24550	24551	51944	51944					-0.07982446126629839
SHSQFMWF	8	Unmodified	_SHSQFMWF_					0	0	0		nc|ENSG00000167130|Q86YN1-2|DOLPP1;ENSG00000167130|ENST00000372546|DOLPP1	nc|ENSG00000167130|Q86YN1-2|DOLPP1	nc|ENSG00000167130|Q86YN1-2|DOLPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.232177734375	2	535.231645	1068.44874	0.64082	0.00034299	0.25141	0.00013456	0.89223	0.00047755	535.2316638400281	86.124	0.78726	86.115	85.848	86.636	-0.0090103					82	30	4	0	0	0	0.46022	1	22637	22637		2.3027	2.3027	1	697270			42553	6153	24551	24552	51945	51945					-0.08275014668492986
SHSSSLVTL	9	Unmodified	_SHSSSLVTL_					0	0	0		ENST00000542933.5_1_12:122233460-122233676:-|nuORF	ENST00000542933.5_1_12:122233460-122233676:-|nuORF	ENST00000542933.5_1_12:122233460-122233676:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.74835205078125	2	465.748182	929.481811	0.030625	1.4263E-05	0.24579	0.00011448	0.27642	0.00012874	465.7481983515331	21.603	0.81944	21.603	21	21.819	0					70	28	4	0	0	0	0.22188	1	2787	2787		20.454	0	1	259880			42554	11737	24552	24553	51946	51946					0.014248906552097651
SHVAARKG	8	Unmodified	_SHVAARKG_					0	0	0			REV__ENST00000366582.7_1_1:236719535-236721710:-|nuORF	REV__ENST00000366582.7_1_1:236719535-236721710:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2380676269531	2	413.238119	824.461684	0.0048023	1.9845E-06	0.038511	1.5914E-05	0.043314	1.7899E-05	413.23804298304435	67.148	3.9637	67.148	65.768	69.732	0					217	142	2	0	0	0	0.45169	1	17043	17043		5.2307	0	1	492550	+		42555	20295	24553	24554	51947	51947					0.04243184505901354
SHVAARKG	8	Unmodified	_SHVAARKG_					0	0	0			REV__ENST00000366582.7_1_1:236719535-236721710:-|nuORF	REV__ENST00000366582.7_1_1:236719535-236721710:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.238037109375	2	413.238119	824.461684	-0.048333	-1.9973E-05	0.13934	5.758E-05	0.091006	3.7607E-05	413.2380736623	79.904	0.75507	79.904	79.612	80.367	0					60	27	3	0	0	0	0.45942	1	20728	20728		2.5775	0	1	424110	+		42556	20295	24553	24554	51948	51948					0.04243184505901354
SHVQIECVAMQ	11	Unmodified	_SHVQIECVAMQ_					0	0	0			REV__ENSG00000106086|ENST00000449726|PLEKHA8	REV__ENSG00000106086|ENST00000449726|PLEKHA8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.3639526367188	2	622.79174	1243.56893	0.36681	0.00022845	2.602	0.0016205	2.9688	0.0018489	623.2971643847399	62.707	0.64267	62.707	62.341	62.984	0					41	23	2	0	0	0	0.29252	1	15460	15460		28.495	5.7582	1	334720	+		42557	14509	24554	24555	51949	51949					-0.04311394457067763
SHWIRLKMKP	10	Unmodified	_SHWIRLKMKP_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;ZZEF1|p.S2060Qfs*9|1|0.37|ENSG00000074755|chr17:4042557-4042557|A/-|frameshift_variant;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.59588623046875	3	432.58502	1294.73323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.172	1	42.263	41.763	42.763	0.091362								0	0	0	0.37235	1	9149	9149		5.4027	0	1				42558	1026	24555	24556	51950	51950					0.09765410815839459
SIAKPKMSN	9	Unmodified	_SIAKPKMSN_					0	0	0			REV__ENST00000392771.1_2_2:160803104-160803332:-|nuORF	REV__ENST00000392771.1_2_2:160803104-160803332:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7824401855469	2	488.268227	974.521901	0.1574	7.6854E-05	-0.30567	-0.00014925	-0.14827	-7.2394E-05	488.26831238717745	33.32	0.68585	33.387	33.025	33.711	0.0667					36	24	2	0	0	0	0.21389	1	6359	6359		25.399	2.2509	1	107230	+		42559	20598	24556	24557	51951	51951					0.03362114054118592
SIALLPRNRDK	11	Unmodified	_SIALLPRNRDK_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8832397460938	2	641.883136	1281.75172	0.010778	6.918E-06	0.051593	3.3117E-05	0.062371	4.0035E-05	641.8829400044114	98.645	0.61124	98.645	98.334	98.945	0					113	70	2	0	0	0	0.47546	1	26393	26393		1.3295	0	1	117030			42560	749	24557	24558	51952	51952					0.12211243991396259
SIAQFILRG	9	Unmodified	_SIAQFILRG_					0	0	0			REV__ENST00000469424.1_1_6:118823123-118823558:+|nuORF	REV__ENST00000469424.1_1_6:118823123-118823558:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.28070068359375	2	502.798009	1003.58147	0.38767	0.00019492	-1.081	-0.00054354	-0.69336	-0.00034862	502.7975151302567	37.464	0.51306	37.552	37.332	37.845	0.087406					40	18	3	0	0	0	0.17611	1	7768	7768		34.102	7.2188	1	195720	+		42561	21340	24558	24559	51953	51953					0.07981753059812036
SIARRIQA	8	Unmodified	_SIARRIQA_					0	0	0			REV__ENST00000556667.1_1_14:37641590-37641863:+|nuORF	REV__ENST00000556667.1_1_14:37641590-37641863:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2349853515625	2	457.780151	913.545748	0.056176	2.5716E-05	0.58996	0.00027007	0.64614	0.00029579	457.7802821470705	17.699	0.69855	17.639	17.444	18.142	-0.060429					32	24	2	0	0	0	0.344	1	1790	1790		2.5775	0	1	111780	+		42562	22260	24559	24560	51954	51954					0.08551715602811782
SIASRLIEV	9	Unmodified	_SIASRLIEV_					0	0	0			REV__ENSG00000111046|ENST00000228641|MYF6	REV__ENSG00000111046|ENST00000228641|MYF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2955627441406	2	494.295299	986.576045	0.63231	0.00031255	-0.23626	-0.00011678	0.39604	0.00019576	494.29512751647593	48.22	0.70191	48.22	47.934	48.636	0					48	24	3	0	0	0	0.04299	2	11008	11008;11059		55.503	10.547	1	1591800	+		42563	14699	24560	24561	51955;51956	51955					0.08222029477337855
SIASRLIEV	9	Unmodified	_SIASRLIEV_					0	0	0			REV__ENSG00000111046|ENST00000228641|MYF6	REV__ENSG00000111046|ENST00000228641|MYF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7640686035156	2	494.295299	986.576045	0.63231	0.00031255	-0.23626	-0.00011678	0.39604	0.00019576	494.29512751647593	48.22	0.70191	48.22	47.934	48.636	0					48	24	3	0	0	0	0.16853	1	11069	11069		31.268	9.7314	1	1591800	+		42564	14699	24560	24561	51957	51957					0.08222029477337855
SIASRLIEV	9	Unmodified	_SIASRLIEV_					0	0	0			REV__ENSG00000111046|ENST00000228641|MYF6	REV__ENSG00000111046|ENST00000228641|MYF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.29534912109375	2	494.295299	986.576045	0.79195	0.00039146	-0.4254	-0.00021028	0.36655	0.00018118	494.29498785691635	48.17	0.72444	48.217	47.994	48.718	0.047523					56	26	3	0	0	0	0.04299	2	10990	10990;11039		55.503	7.7708	1	1503000	+		42565	14699	24560	24561	51958;51959	51958					0.08222029477337855
SIASRLIEV	9	Unmodified	_SIASRLIEV_					0	0	0			REV__ENSG00000111046|ENST00000228641|MYF6	REV__ENSG00000111046|ENST00000228641|MYF6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	494.295299	986.576045	0.79195	0.00039146	-0.4254	-0.00021028	0.36655	0.00018118	494.29498785691635	48.17	0.72444	48.217	47.994	48.718	0.047523	0.01016	-0.00014876	NaN	55.503	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1503000	+		42566	14699	24560	24561							0.08222029477337855
SIASSASMPYK	11	Oxidation (M)	_SIASSASM(Oxidation (M))PYK_		SIASSASM(1)PYK		SIASSASM(77)PYK	0	0	1		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.2792358398438	2	579.278989	1156.54342	0.17534	0.00010157	0.30807	0.00017846	0.48341	0.00028003	579.2792256292819	26.912	1.031	26.912	26.499	27.53	0					77	31	3	0	0	0	0.006514	2	4512	4512;4564		77.049	50.78	1	217180			42567	1896	24561	24562	51960;51961	51960		234			-0.028585457078406762
SIASSASMPYK	11	Oxidation (M)	_SIASSASM(Oxidation (M))PYK_		SIASSASM(1)PYK		SIASSASM(86)PYK	0	0	1		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.2793579101562	2	579.278989	1156.54342	0.20182	0.00011691	0.29548	0.00017116	0.49729	0.00028807	579.2791302580915	27.062	0.93117	27.041	26.506	27.437	-0.021412					55	32	2	0	0	0	0.0023951	1	4522	4522		85.764	58.541	1	232070			42568	1896	24561	24562	51962	51962		234			-0.028585457078406762
SIASSASMPYK	11	Oxidation (M)	_SIASSASM(Oxidation (M))PYK_		SIASSASM(1)PYK		SIASSASM(88)PYK	0	0	1		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.279296875	2	579.278989	1156.54342	0.2672	0.00015479	0.3065	0.00017755	0.57371	0.00033234	579.2792070138476	27.01	0.9863	26.998	26.541	27.527	-0.011562					71	32	3	0	0	0	0.0016102	1	4532	4532		88.364	62.096	1	252300			42569	1896	24561	24562	51963	51963		234			-0.028585457078406762
SIAYLVTKL	9	Unmodified	_SIAYLVTKL_					0	0	0		nc|ENSG00000040933|Q96PE3-4|INPP4A	nc|ENSG00000040933|Q96PE3-4|INPP4A	nc|ENSG00000040933|Q96PE3-4|INPP4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.3104553222656	2	504.310418	1006.60628	0.4622	0.00023309	-0.15077	-7.6036E-05	0.31143	0.00015705	504.3102089227524	66.449	0.75954	66.449	66.035	66.794	0					59	26	4	0	0	0	0.18803	1	16617	16617		25.399	25.399	1	747000			42570	12570	24562	24563	51964	51964					0.10324388142510088
SIAYLVTKL	9	Unmodified	_SIAYLVTKL_					0	0	0		nc|ENSG00000040933|Q96PE3-4|INPP4A	nc|ENSG00000040933|Q96PE3-4|INPP4A	nc|ENSG00000040933|Q96PE3-4|INPP4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.3100891113281	2	504.310418	1006.60628	0.29251	0.00014752	0.084679	4.2705E-05	0.37719	0.00019022	504.3102430001383	66.467	0.72697	66.454	66.115	66.842	-0.013596					58	26	3	0	0	0	0.18803	1	16606	16606		25.399	25.399	1	753100			42571	12570	24562	24563	51965	51965					0.10324388142510088
SIAYLVTKL	9	Unmodified	_SIAYLVTKL_					0	0	0		nc|ENSG00000040933|Q96PE3-4|INPP4A	nc|ENSG00000040933|Q96PE3-4|INPP4A	nc|ENSG00000040933|Q96PE3-4|INPP4A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	504.310418	1006.60628	0.4622	0.00023309	-0.15077	-7.6036E-05	0.31143	0.00015705	504.3102089227524	66.449	0.75954	66.449	66.035	66.794	0	0.0045014	-0.00012468	NaN	25.399	59	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	747000			42572	12570	24562	24563							0.10324388142510088
SIAYLVTKL	9	Unmodified	_SIAYLVTKL_					0	0	0		nc|ENSG00000040933|Q96PE3-4|INPP4A	nc|ENSG00000040933|Q96PE3-4|INPP4A	nc|ENSG00000040933|Q96PE3-4|INPP4A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	504.310418	1006.60628	0.40495	0.00020422	-0.013407	-6.7612E-06	0.39154	0.00019746	504.31022585063005	66.347	0.62714	66.431	66.083	66.71	0.083832	-0.013422	1.3874E-05	NaN	25.399	58	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	750920			42573	12570	24562	24563							0.10324388142510088
SIAYLVTKL	9	Unmodified	_SIAYLVTKL_					0	0	0		nc|ENSG00000040933|Q96PE3-4|INPP4A	nc|ENSG00000040933|Q96PE3-4|INPP4A	nc|ENSG00000040933|Q96PE3-4|INPP4A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	504.310418	1006.60628	0.29251	0.00014752	0.084679	4.2705E-05	0.37719	0.00019022	504.3102430001383	66.467	0.72697	66.454	66.115	66.842	-0.013596	0.0089203	0.00011281	NaN	25.399	58	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	753100			42574	12570	24562	24563							0.10324388142510088
SICSHSWNM	9	Unmodified	_SICSHSWNM_					0	0	0			REV__ENSG00000174343|ENST00000310169|CHRNA9	REV__ENSG00000174343|ENST00000310169|CHRNA9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2908325195312	2	532.718044	1063.42154	0.59983	0.00031954	-0.93658	-0.00049893	-0.33675	-0.00017939	532.7179765418218	40.094	0.29354	40.186	40.02	40.313	0.09267					10	9	2	0	0	0	0.25066	1	8535	8535		3.9444	0	1	138190	+		42575	17828	24563	24564	51966	51966					-0.10763866271213374
SICSHSWNM	9	Unmodified	_SICSHSWNM_					0	0	0			REV__ENSG00000174343|ENST00000310169|CHRNA9	REV__ENSG00000174343|ENST00000310169|CHRNA9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7926635742188	2	532.718044	1063.42154	0.57747	0.00030763	-0.39242	-0.00020905	0.18505	9.8579E-05	532.7177226590384	40.113	0.33019	40.212	40.01	40.34	0.099407					13	11	2	0	0	0	0.25066	1	8545	8545		7.2892	0	1	119650	+		42576	17828	24563	24564	51967	51967					-0.10763866271213374
SICSLDLREV	10	Unmodified	_SICSLDLREV_					0	0	0			REV__ENST00000564901.1_1_16:30886783-30905983:+|nuORF	REV__ENST00000564901.1_1_16:30886783-30905983:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.8297119140625	2	567.794806	1133.57506	0.3977	0.00022581	-0.10385	-5.8965E-05	0.29386	0.00016685	567.7944643533566	52.134	0.78851	52.185	51.676	52.465	0.050571					63	28	4	0	0	0	0.31358	1	12075	12075		13.906	8.1742	1	1287700	+		42577	22350	24564	24565	51968	51968					0.013614470460879602
SIDDWVKSV	9	Unmodified	_SIDDWVKSV_					0	0	0			REV__THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	REV__THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8001708984375	2	524.769114	1047.52368	0.71088	0.00037305	-2.2234	-0.0011668	-1.5125	-0.00079374	525.268632406961	83.932	0.72462	83.915	83.23	83.955	-0.01683					38	31	2	0	0	0	0.25431	1	21910	21910		9.3831	5.4387	1	285790	+		42578	15277	24565	24566	51969	51969					0.001814463437312952
SIDEHFQPK	9	Unmodified	_SIDEHFQPK_					0	0	0		ENSG00000087263|ENST00000566157|OGFOD1;nc|ENSG00000087263|Q8N543-2|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.322509765625	2	550.772188	1099.52982	0.2462	0.0001356	0.28717	0.00015817	0.53337	0.00029377	550.7725226307903	26.287	0.27198	26.287	26.078	26.35	0					15	9	2	0	0	0	0.25431	1	4312	4312		9.3831	1.473	1	50180			42579	1301	24566	24567	51970	51970					-0.015960354247454234
SIDEHFQPK	9	Unmodified	_SIDEHFQPK_					0	0	0		ENSG00000087263|ENST00000566157|OGFOD1;nc|ENSG00000087263|Q8N543-2|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3223876953125	2	550.772188	1099.52982	0.46839	0.00025798	0.17773	9.7891E-05	0.64613	0.00035587	550.7726368834312	26.356	0.31382	26.334	26.158	26.472	-0.022238					15	10	2	0	0	0	0.25527	1	4336	4336		8.7454	3.5147	1	71981			42580	1301	24566	24567	51971	51971					-0.015960354247454234
SIDEPDVMAY	10	Unmodified	_SIDEPDVMAY_					0	0	0			REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4;REV__ENST00000476846.1_7:111503332-111846439:-|nuORF	REV__ENST00000476846.1_7:111503332-111846439:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2347412109375	2	570.249897	1138.48524	0.51889	0.0002959	2.3038	0.0013137	2.8227	0.0016096	570.251400602085	36.221	1.1265	36.303	36.062	37.188	0.082359					94	40	4	0	0	0	0.36786	1	7376	7376		9.3831	0.63772	1	1400900	+		42581	15372;21428	24567	24568	51972	51972					-0.07846227353115864
SIDKREHLEK	10	Unmodified	_SIDKREHLEK_					0	0	0			REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.3155822753906	3	418.89821	1253.6728	-0.18479	-7.741E-05	-4.0271	-0.001687	-4.2119	-0.0017644	419.23020698792857	25.527	0.52785	25.496	25.237	25.764	-0.03141					32	18	3	0	0	0	0.31847	1	4043	4043		3.5871	0.74377	1	89806	+		42582	13140	24568	24569	51973	51973					0.05610971966461875
SIDSSRKNK	9	Unmodified	_SIDSSRKNK_					0	0	0		nc|ENSG00000189195|Q5XKL5-4|BTBD8;nc|ENSG00000189195|Q5XKL5|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8070068359375	2	517.783087	1033.55162	0.3636	0.00018827	2.6759	0.0013856	3.0395	0.0015738	517.7846380630683	38.242	0.40961	38.333	38.101	38.511	0.090881					20	14	2	0	0	0	0.24993	1	7906	7906		8.7454	2.0222	1	87411			42583	12889	24569	24570	51974	51974					0.036187693238161955
SIDYIKPP	8	Unmodified	_SIDYIKPP_					0	0	0			REV__ENST00000467479.1_1_1:72163664-72400987:-|nuORF	REV__ENST00000467479.1_1_1:72163664-72400987:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2764892578125	2	466.758018	931.501483	-0.10201	-4.7613E-05	0.67671	0.00031586	0.5747	0.00026825	466.75819303679697	42.995	0.89962	42.995	42.407	43.307	0					56	32	2	0	0	0	0.26527	1	9401	9401		44.407	19.733	1	162120	+		42584	17703	24570	24571	51975	51975					0.03299266665953837
SIDYIKPP	8	Unmodified	_SIDYIKPP_					0	0	0			REV__ENST00000467479.1_1_1:72163664-72400987:-|nuORF	REV__ENST00000467479.1_1_1:72163664-72400987:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2764587402344	2	466.758018	931.501483	0.0053042	2.4758E-06	0.14188	6.6222E-05	0.14718	6.8698E-05	466.7578714492635	42.678	1.2246	42.764	42.266	43.49	0.085201					70	44	2	0	0	0	0.26527	1	9299	9299		36.044	19.102	1	193560	+		42585	17703	24570	24571	51976	51976					0.03299266665953837
SIDYIKPP	8	Unmodified	_SIDYIKPP_					0	0	0			REV__ENST00000467479.1_1_1:72163664-72400987:-|nuORF	REV__ENST00000467479.1_1_1:72163664-72400987:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.27655029296875	2	466.758018	931.501483	0.083747	3.9089E-05	0.29314	0.00013683	0.37689	0.00017592	466.7579092598326	42.609	1.1311	42.7	42.26	43.391	0.091362					55	40	2	0	0	0	0.26527	1	9297	9297		44.407	15.92	1	237400	+		42586	17703	24570	24571	51977	51977					0.03299266665953837
SIEFCPPPAPR	11	Unmodified	_SIEFCPPPAPR_					0	0	0			REV__ENST00000528307.5_1_11:14539460-14541880:-|nuORF	REV__ENST00000528307.5_1_11:14539460-14541880:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5267639160156	3	405.205986	1212.59613	-0.32895	-0.00013329	0.78105	0.00031649	0.45211	0.0001832	405.20606629551327	15.643	0.64025	15.533	15.176	15.816	-0.10981					32	21	2	0	0	0	0.3325	1	994	994		2.2527	0	1	47603	+		42587	21987	24571	24572	51978	51978					-0.0016654285439017258
SIEGSKILI	9	Unmodified	_SIEGSKILI_					0	0	0			REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2921447753906	2	480.292225	958.569897	0.20065	9.637E-05	0.099441	4.7761E-05	0.30009	0.00014413	480.29213729264006	59.32	0.47363	59.411	59.183	59.657	0.091301					33	16	3	0	0	0	0.16283	1	14415	14415		29.082	0	1	435760	+		42588	18439	24572	24573	51979	51979					0.08895511245816579
SIEGSKILI	9	Unmodified	_SIEGSKILI_					0	0	0			REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2923278808594	2	480.292225	958.569897	0.42625	0.00020473	-0.23975	-0.00011515	0.1865	8.9575E-05	480.2920121823698	59.441	0.45319	59.43	59.199	59.652	-0.011486					31	15	3	0	0	0	0.12642	1	14457	14457		34.402	0	1	361700	+		42589	18439	24572	24573	51980	51980					0.08895511245816579
SIEIDIPVPK	10	Unmodified	_SIEIDIPVPK_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000464601.5_1_3:182733228-182740387:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8134765625	2	555.823889	1109.63323	0.3873	0.00021527	0.053687	2.984E-05	0.44098	0.00024511	555.823809336203	62.42	0.66875	62.42	62.138	62.807	0					39	24	2	0	0	0	0.048379	1	15416	15416		59.368	26.583	1	460870			42590	1103	24573	24574	51981	51981					0.08279451963039719
SIEIDIPVPK	10	Unmodified	_SIEIDIPVPK_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000464601.5_1_3:182733228-182740387:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8133544921875	2	555.823889	1109.63323	0.36116	0.00020074	0.34149	0.00018981	0.70266	0.00039055	555.8239434790439	62.393	0.89707	62.49	62.12	63.017	0.096985					45	32	2	0	0	0	0.023567	1	15378	15378		67.838	27.888	1	481910			42591	1103	24573	24574	51982	51982					0.08279451963039719
SIEIDIPVPK	10	Unmodified	_SIEIDIPVPK_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000464601.5_1_3:182733228-182740387:-|nuORF	ENSG00000078070|ENST00000265594|MCCC1	ENSG00000078070|ENST00000265594|MCCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8134155273438	2	555.823889	1109.63323	0.31089	0.0001728	0.25401	0.00014119	0.5649	0.00031399	555.8238503127725	62.425	0.85189	62.416	62.142	62.994	-0.0085564					44	31	2	0	0	0	0.025736	1	15399	15399		65.474	32.688	1	438060			42592	1103	24573	24574	51983	51983					0.08279451963039719
SIELQGKF	8	Unmodified	_SIELQGKF_					0	0	0			REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.64581298828125	2	461.255643	920.496732	0.46048	0.0002124	1.6115	0.00074333	2.072	0.00095573	461.256621549779	36.987	0.8557	37.08	36.567	37.423	0.093014					44	30	2	0	0	0	0.34218	1	7444	7444		0.6015	0	1	369640	+		42593	22898	24574	24575	51984	51984					0.0333038252319966
SIELQGKF	8	Unmodified	_SIELQGKF_					0	0	0			REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	461.255643	920.496732	0.35411	0.00016334	1.768	0.00081548	2.1221	0.00097882	461.2566520750725	37.091	0.88854	37.091	36.644	37.532	0	0.016954	5.7133E-05	NaN	0.6015	45	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	439660	+		42594	22898	24574	24575							0.0333038252319966
SIELQGKF	8	Unmodified	_SIELQGKF_					0	0	0			REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	REV__nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	461.255643	920.496732	0.15858	7.3146E-05	1.7108	0.00078909	1.8693	0.00086224	461.2567781380547	36.963	0.87673	37.05	36.595	37.471	0.08741	-0.023243	4.3593E-06	NaN	0.6015	44	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	505440	+		42595	22898	24574	24575							0.0333038252319966
SIEQLFWSLE	10	Unmodified	_SIEQLFWSLE_					0	0	0		ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.91046142578125	3	417.880044	1250.6183	-0.14578	-6.0918E-05	0.347	0.000145	0.20122	8.4087E-05	417.88010323186484	15.114	0.67387	15.049	14.871	15.545	-0.064413					47	22	3	0	0	0	0.31979	1	916	916		6.2344	1.1868	1	281690			42596	6774	24575	24576	51985	51985					0.003019600950210588
SIERKKWMNI	10	Unmodified	_SIERKKWMNI_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	ENSG00000122299|ENST00000355758|ZC3H7A;ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	ZC3H7A|p.K783Nfs*23|1|0.37|ENSG00000122299|chr16:11758510-11758510|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.576171875	3	435.576302	1303.70708	-0.080419	-3.5029E-05	-0.33899	-0.00014765	-0.41941	-0.00018268	435.57617488939457	37.975	0.85429	38.073	37.768	38.622	0.097527					84	30	4	0	0	0	0.37568	1	7905	7905		7.9454	0.90831	1	879460			42597	3037;23414	24576	24577	51986	51986					0.06737096853726143
SIERLRVIA	9	Unmodified	_SIERLRVIA_					0	0	0		nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	nc|ENSG00000100336|Q9BPW4-3|APOL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2471313476562	2	528.82984	1055.64513	0.28394	0.00015015	3.0118	0.0015928	3.2958	0.0017429	528.831229911493	29.576	0.14623	29.59	29.507	29.653	0.013474					7	4	2	0	0	0	0.25622	1	5297	5297		7.2892	0	1	34703			42598	12614	24577	24578	51987	51987					0.11953113496906553
SIFAGQNDPLK	11	Unmodified	_SIFAGQNDPLK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-2|MAP4;ENST00000482752.1_1_3:47918864-47969739:-|nuORF	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.7926635742188	2	595.31422	1188.61389	0.79157	0.00047123	-0.56603	-0.00033697	0.22554	0.00013427	595.3140500505165	46.994	0.48912	46.994	46.813	47.302	0					43	16	3	0	0	0	0.0074527	1	10634	10634		96.034	64.766	1	1700200			42599	638	24578	24579	51988	51988					0.027124956721081617
SIFAGQNDPLK	11	Unmodified	_SIFAGQNDPLK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-2|MAP4;ENST00000482752.1_1_3:47918864-47969739:-|nuORF	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.7921752929688	2	595.31422	1188.61389	0.52528	0.00031271	0.078536	4.6754E-05	0.60382	0.00035946	595.3143798976678	46.898	0.61618	46.951	46.71	47.326	0.052574					61	22	3	0	0	0	0.24517	1	10560	10560		44.945	34.145	1	1538500			42600	638	24578	24579	51989	51989					0.027124956721081617
SIFAGQNDPLK	11	Unmodified	_SIFAGQNDPLK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-2|MAP4;ENST00000482752.1_1_3:47918864-47969739:-|nuORF	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.7922973632812	2	595.31422	1188.61389	0.87446	0.00052058	-0.45965	-0.00027364	0.41481	0.00024694	595.3140778939224	46.951	0.56559	47.006	46.768	47.334	0.054371					48	19	3	0	0	0	0.19135	1	10568	10568		51.765	39.524	1	1358600			42601	638	24578	24579	51990	51990					0.027124956721081617
SIFDDFAHYEK	11	Unmodified	_SIFDDFAHYEK_					0	0	0		ENSG00000149658|ENST00000370339|YTHDF1;ENST00000518373.1_1_8:64100204-64101373:+|nuORF;ENSG00000185728|ENST00000539294|YTHDF3	ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.8784484863281	3	457.878704	1370.61428	0.064466	2.9518E-05	-0.41989	-0.00019226	-0.35543	-0.00016274	457.87841767274995	60.424	0.61403	60.424	60.15	60.764	0					61	22	4	0	0	0	0.37255	2	14756	14756;14806		14.838	6.0861	1	1313700			42602	4888	24579	24580	51991;51992	51991					-0.05620129398675999
SIFDDFAHYEK	11	Unmodified	_SIFDDFAHYEK_					0	0	0		ENSG00000149658|ENST00000370339|YTHDF1;ENST00000518373.1_1_8:64100204-64101373:+|nuORF;ENSG00000185728|ENST00000539294|YTHDF3	ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.8781433105469	3	457.878704	1370.61428	-0.10322	-4.7262E-05	-0.23466	-0.00010744	-0.33788	-0.00015471	457.8785184887344	60.322	0.70802	60.417	60.131	60.839	0.095089					63	25	4	0	0	0	0.40928	1	14717	14717		10.016	2.9792	1	1661300			42603	4888	24579	24580	51993	51993					-0.05620129398675999
SIFDDFAHYEK	11	Unmodified	_SIFDDFAHYEK_					0	0	0		ENSG00000149658|ENST00000370339|YTHDF1;ENST00000518373.1_1_8:64100204-64101373:+|nuORF;ENSG00000185728|ENST00000539294|YTHDF3	ENSG00000149658|ENST00000370339|YTHDF1	ENSG00000149658|ENST00000370339|YTHDF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.8785400390625	3	457.878704	1370.61428	0.34636	0.00015859	-0.33086	-0.00015149	0.015504	7.099E-06	457.87838112947924	60.44	0.69837	60.428	60.137	60.836	-0.011486					59	25	3	0	0	0	0.36777	2	14753	14753;14801		15.467	5.7023	1	1528900			42604	4888	24579	24580	51994;51995	51994					-0.05620129398675999
SIFDDFSHYEK	11	Unmodified	_SIFDDFSHYEK_					0	0	0		ENSG00000198492|ENST00000373812|YTHDF2;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	ENSG00000198492|ENST00000373812|YTHDF2	ENSG00000198492|ENST00000373812|YTHDF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.2101745605469	3	463.210342	1386.6092	0.039777	1.8425E-05	0.018485	8.5626E-06	0.058263	2.6988E-05	463.21034958010034	58.157	1.3029	58.157	57.693	58.996	0					111	45	4	0	0	0	0.24361	2	14053	14053;14099		27.289	19.316	1	2319500			42605	8080	24580	24581	51996;51997	51996					-0.0686443326128483
SIFDDFSHYEK	11	Unmodified	_SIFDDFSHYEK_					0	0	0		ENSG00000198492|ENST00000373812|YTHDF2;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	ENSG00000198492|ENST00000373812|YTHDF2	ENSG00000198492|ENST00000373812|YTHDF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2103271484375	3	463.210342	1386.6092	0.063346	2.9343E-05	-0.099923	-4.6285E-05	-0.036577	-1.6943E-05	463.2102697595513	57.842	0.89429	57.928	57.686	58.581	0.085621					92	32	4	0	0	0	0.2199	2	13963	13963;14012		29.419	20.175	1	2647200			42606	8080	24580	24581	51998;51999	51998					-0.0686443326128483
SIFDGRVVAK	10	Unmodified	_SIFDGRVVAK_					0	0	0		ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	ENSG00000143183|ENST00000367881|TMCO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.3139038085938	2	546.314023	1090.61349	0.57295	0.00031301	-1.1213	-0.00061257	-0.54834	-0.00029957	546.3133363007597	37.49	1.3701	37.583	37.331	38.701	0.093014					151	49	5	0	0	0	0.0049066	4	7752	7673;7705;7752;7795		92.201	42.647	1	12141000			42607	4486	24581	24582	52000;52001;52002;52003	52002					0.07181120742939129
SIFEPAKGGEK	11	Unmodified	_SIFEPAKGGEK_					0	0	0		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.8085327148438	2	581.808771	1161.60299	0.2423	0.00014097	0.94719	0.00055108	1.1895	0.00069205	581.8090599584481	25.006	0.53425	25.006	24.762	25.296	0					55	18	4	0	0	0	0.25774	2	3910	3910;3956		26.021	9.8716	1	258630			42608	5478	24582	24583	52004;52005	52004					0.028650932978507626
SIFEPAKGGEK	11	Unmodified	_SIFEPAKGGEK_					0	0	0		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.8091430664062	2	581.808771	1161.60299	0.14119	8.2145E-05	2.1055	0.001225	2.2467	0.0013072	581.8102188810357	25.069	0.85424	25.014	24.486	25.341	-0.055931					56	29	3	0	0	0	0.15094	2	3949	3949;3997		35.612	15.198	1	252510			42609	5478	24582	24583	52006;52007	52006					0.028650932978507626
SIFEPAKGGEK	11	Unmodified	_SIFEPAKGGEK_					0	0	0		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.8092041015625	2	581.808771	1161.60299	-0.080319	-4.673E-05	2.2071	0.0012841	2.1268	0.0012374	581.8103365157021	25.085	0.86187	25.054	24.545	25.406	-0.031408					54	29	3	0	0	0	0.28246	2	3927	3927;3975		23.801	8.5526	1	202550			42610	5478	24582	24583	52008;52009	52008					0.028650932978507626
SIFEPLRQK	9	Unmodified	_SIFEPLRQK_					0	0	0		ENST00000606644.1_1:206135664-206137850:-|nuORF;ENST00000494534.1_1:143914258-143915936:+|nuORF;ENST00000429210.1_1:206135664-206137757:-|nuORF	ENST00000606644.1_1:206135664-206137850:-|nuORF	ENST00000606644.1_1:206135664-206137850:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.802978515625	2	559.321848	1116.62914	0.59551	0.00033308	-1.075	-0.00060124	-0.47944	-0.00026816	559.321226569456	37.593	0.31694	37.593	37.503	37.82	0					12	10	2	0	0	0	0.24471	1	7791	7791		17.113	5.4726	1	130040			42611	10446	24583	24584	52010	52010					0.07549407259989493
SIFEPNLN	8	Unmodified	_SIFEPNLN_					0	0	0			REV__nc|ENSG00000105576|O14787-2|TNPO2	REV__nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.23748779296875	2	467.23745	932.460347	0.067499	3.1538E-05	0.68827	0.00032159	0.75577	0.00035313	467.2374779881367	53.931	0.94404	53.987	53.56	54.504	0.056255					103	35	4	0	0	0	0.18275	1	12712	12712		46.021	2.1627	1	2265100	+		42612	14466	24584	24585	52011	52011					-0.008584943735399975
SIFEPNLN	8	Unmodified	_SIFEPNLN_					0	0	0			REV__nc|ENSG00000105576|O14787-2|TNPO2	REV__nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.23748779296875	2	467.23745	932.460347	0.36078	0.00016857	0.26155	0.00012221	0.62233	0.00029078	467.2373154646684	54.184	0.92274	54.168	53.682	54.605	-0.015923					97	32	4	0	0	0	0.18275	1	12780	12780		46.021	2.1627	1	2508900	+		42613	14466	24584	24585	52012	52012					-0.008584943735399975
SIFEPVNLPK	10	Unmodified	_SIFEPVNLPK_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1;ENST00000509902.5_1_5:118380652-118439957:+|nuORF	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.29736328125	2	572.324057	1142.63356	0.30282	0.00017331	-0.96035	-0.00054963	-0.65753	-0.00037632	572.3232616486954	58.719	0.66774	58.719	58.413	59.081	0					60	22	4	0	0	0	0.27086	1	14273	14273		32.037	14.925	1	753350			42614	6668	24585	24586	52013	52013					0.06794871682882331
SIFEPVNLPK	10	Unmodified	_SIFEPVNLPK_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1;ENST00000509902.5_1_5:118380652-118439957:+|nuORF	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2973022460938	2	572.324057	1142.63356	0.41537	0.00023772	-0.83158	-0.00047593	-0.41621	-0.00023821	572.32326739395	58.571	0.56902	58.663	58.446	59.015	0.091301					50	19	4	0	0	0	0.27086	1	14206	14206		32.037	14.925	1	674190			42615	6668	24585	24586	52014	52014					0.06794871682882331
SIFEPVNLPK	10	Unmodified	_SIFEPVNLPK_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1;ENST00000509902.5_1_5:118380652-118439957:+|nuORF	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2969360351562	2	572.324057	1142.63356	0.42898	0.00024551	-0.87076	-0.00049836	-0.44179	-0.00025284	572.3230747518728	58.716	0.58641	58.702	58.445	59.031	-0.014267					53	20	4	0	0	0	0.28108	1	14201	14201		28.495	10.348	1	816410			42616	6668	24585	24586	52015	52015					0.06794871682882331
SIFFESMPYK	10	Oxidation (M)	_SIFFESM(Oxidation (M))PYK_		SIFFESM(1)PYK		SIFFESM(110)PYK	0	0	1		nc|ENSG00000176974|P34896-4|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF;ENST00000554467.5_1_12:57625133-57626138:+|nuORF;nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF	nc|ENSG00000176974|P34896-4|SHMT1;ENST00000557433.5_1_12:57625333-57628141:+|nuORF	ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.7998657226562	2	632.799557	1263.58456	0.44882	0.00028401	-0.09115	-5.7679E-05	0.35767	0.00022633	632.7994523113413	53.264	0.82023	53.264	53.038	53.858	0					68	30	4	0	0	0	0.0014947	2	12593	12549;12593		114.19	70.414	1	1587800			42617	6953;7278	24586	24587	52016;52017	52017		782			-0.03668784668366243
SIFFESMPYK	10	Oxidation (M)	_SIFFESM(Oxidation (M))PYK_		SIFFESM(1)PYK		SIFFESM(130)PYK	0	0	1		nc|ENSG00000176974|P34896-4|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF;ENST00000554467.5_1_12:57625133-57626138:+|nuORF;nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF	nc|ENSG00000176974|P34896-4|SHMT1;ENST00000557433.5_1_12:57625333-57628141:+|nuORF	ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.7996215820312	2	632.799557	1263.58456	0.49901	0.00031577	-0.07968	-5.0421E-05	0.41933	0.00026535	632.7993511889631	53.271	0.7234	53.328	53.043	53.766	0.056255					62	26	4	0	0	0	0.00068414	2	12546	12546;12597		125.04	73.408	1	1629900			42618	6953;7278	24586	24587	52018;52019	52018		782			-0.03668784668366243
SIFFESMPYK	10	Oxidation (M)	_SIFFESM(Oxidation (M))PYK_		SIFFESM(1)PYK		SIFFESM(120)PYK	0	0	1		nc|ENSG00000176974|P34896-4|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF;ENST00000554467.5_1_12:57625133-57626138:+|nuORF;nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENST00000557433.5_1_12:57625333-57628141:+|nuORF;nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF	nc|ENSG00000176974|P34896-4|SHMT1;ENST00000557433.5_1_12:57625333-57628141:+|nuORF	ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.7999267578125	2	632.799557	1263.58456	0.54142	0.00034261	-0.15713	-9.9434E-05	0.38428	0.00024317	632.7993358731937	53.456	0.73343	53.446	53.166	53.899	-0.0096054					67	27	4	0	0	0	0.0012277	2	12599	12599;12652		117.76	72.061	1	1400500			42619	6953;7278	24586	24587	52020;52021	52020		782			-0.03668784668366243
SIFFLYLKD	9	Unmodified	_SIFFLYLKD_					0	0	0		ENST00000211314.4_1_6:52550851-52550977:+|nuORF	ENST00000211314.4_1_6:52550851-52550977:+|nuORF	ENST00000211314.4_1_6:52550851-52550977:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.280517578125	2	573.3157	1144.61685	0.59318	0.00034008	-1.9969	-0.0011449	-1.4038	-0.00080479	573.312446752323	77.257	0.13293	77.226	77.154	77.287	-0.031334					8	4	3	0	0	0	0.25202	1	19928	19928		10.824	0	1	39821			42620	8805	24587	24588	52022	52022					0.05032370796925534
SIFFQLSGQ	9	Unmodified	_SIFFQLSGQ_					0	0	0			REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.784912109375	2	513.766374	1025.5182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.268	1	62.268	61.768	62.768	0								0	0	0	0.20238	1	15352	15352		21.747	1.293	1		+		42621	17840	24588	24589	52023	52023					0.0064576755189591495
SIFHQLANL	9	Unmodified	_SIFHQLANL_					0	0	0		ENST00000532395.5_1_17:72947667-72950470:-|nuORF;nc|ENSG00000167861|Q8IV36-3|HID1;nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1	ENST00000532395.5_1_17:72947667-72950470:-|nuORF	ENST00000532395.5_1_17:72947667-72950470:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.7876586914062	2	521.787641	1041.56073	0.32327	0.00016868	-0.33507	-0.00017484	-0.011801	-6.1577E-06	521.7870927435513	23.756	0.73322	23.683	23.474	24.207	-0.072557					33	24	2	0	0	0	0.28674	1	3570	3570		10.824	10.824	1	84855			42622	6218	24589	24590	52024	52024					0.04161162680134112
SIFIGEDTPD	10	Unmodified	_SIFIGEDTPD_					0	0	0			REV__nc|ENSG00000180900|Q14160-2|SCRIB	REV__nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8009643554688	2	547.256037	1092.49752	0.48475	0.00026528	1.8492	0.001012	2.334	0.0012773	547.2565024388886	71.48	0.34711	71.48	71.292	71.639	0					23	11	3	0	0	0	0.29038	1	18148	18148		18.146	0	1	340790	+		42623	18123	24590	24591	52025	52025					-0.04502867618430173
SIFIGEDTPD	10	Unmodified	_SIFIGEDTPD_					0	0	0			REV__nc|ENSG00000180900|Q14160-2|SCRIB	REV__nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8009643554688	2	547.256037	1092.49752	0.62888	0.00034416	1.6079	0.00087993	2.2368	0.0012241	547.2564971876876	71.617	0.26055	71.59	71.397	71.658	-0.027275					11	8	2	0	0	0	0.29038	1	18150	18150		24.021	3.1494	1	357990	+		42624	18123	24590	24591	52026	52026					-0.04502867618430173
SIFIGGSFILK	11	Unmodified	_SIFIGGSFILK_					0	0	0		nc|ENSG00000140157|Q8N8Q9-2|NIPA2;ENSG00000140157|ENST00000337451|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.3502197265625	2	591.350074	1180.6856	0.50655	0.00029955	-0.4214	-0.00024919	0.085151	5.0354E-05	591.3496156338108	72.501	0.71989	72.501	72.241	72.961	0					68	26	4	0	0	0	0.00018352	2	18495	18449;18495		108.26	34.062	1	1057300			42625	4285	24591	24592	52027;52028	52028					0.1024803509665162
SIFIGGSFILK	11	Unmodified	_SIFIGGSFILK_					0	0	0		nc|ENSG00000140157|Q8N8Q9-2|NIPA2;ENSG00000140157|ENST00000337451|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.35009765625	2	591.350074	1180.6856	0.55808	0.00033002	-0.62332	-0.0003686	-0.065234	-3.8576E-05	591.3493637947629	72.421	0.59731	72.478	72.249	72.846	0.056572					61	21	4	0	0	0	0.00039266	1	18449	18449		105.35	48.096	1	886960			42626	4285	24591	24592	52029	52029					0.1024803509665162
SIFIGGSFILK	11	Unmodified	_SIFIGGSFILK_					0	0	0		nc|ENSG00000140157|Q8N8Q9-2|NIPA2;ENSG00000140157|ENST00000337451|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	nc|ENSG00000140157|Q8N8Q9-2|NIPA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.3500366210938	2	591.350074	1180.6856	0.5092	0.00030112	-0.63345	-0.00037459	-0.12424	-7.3472E-05	591.3494448454073	72.564	0.6492	72.535	72.304	72.954	-0.029305					49	22	3	0	0	0	0.00086696	1	18493	18493		98.73	44.897	1	728670			42627	4285	24591	24592	52030	52030					0.1024803509665162
SIFKGQDQAY	10	Unmodified	_SIFKGQDQAY_					0	0	0			REV__ENSG00000177476|ENST00000320002|OR2G3	REV__ENSG00000177476|ENST00000320002|OR2G3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.811279296875	2	578.785296	1155.55604	0.58	0.00033569	0.21265	0.00012308	0.79264	0.00045877	578.7854820154214	47.025	0.50668	47.025	46.873	47.38	0					25	17	2	0	0	0	0.29589	1	10740	10740		22.736	12.553	1	292300	+		42628	17992	24592	24593	52031	52031					-0.01551766253282949
SIFKQPVTK	9	Unmodified	_SIFKQPVTK_					0	0	0		ENSG00000134046|ENST00000256429|MBD2;nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3	ENSG00000134046|ENST00000256429|MBD2	ENSG00000134046|ENST00000256429|MBD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3136596679688	2	524.313492	1046.61243	0.30572	0.00016029	-0.30103	-0.00015783	0.0046874	2.4576E-06	524.3134047686924	27.426	1.298	27.426	27.035	28.333	0					126	44	5	0	0	0	4.5677E-07	2	4652	4652;4699		162.31	110.68	1	5949700			42629	3750	24593	24594	52032;52033	52032					0.09098906374038052
SIFKQPVTK	9	Unmodified	_SIFKQPVTK_					0	0	0		ENSG00000134046|ENST00000256429|MBD2;nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3	ENSG00000134046|ENST00000256429|MBD2	ENSG00000134046|ENST00000256429|MBD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.313720703125	2	524.313492	1046.61243	0.22064	0.00011569	-0.26324	-0.00013802	-0.042595	-2.2333E-05	524.3134271560823	27.419	1.2679	27.397	27.1	28.368	-0.02141					123	44	4	0	0	0	4.5677E-07	3	4655	4604;4655;4699		162.31	112.38	1	5847600			42630	3750	24593	24594	52034;52035;52036	52035					0.09098906374038052
SIFKQPVTK	9	Unmodified	_SIFKQPVTK_					0	0	0		ENSG00000134046|ENST00000256429|MBD2;nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3	ENSG00000134046|ENST00000256429|MBD2	ENSG00000134046|ENST00000256429|MBD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.3136596679688	2	524.313492	1046.61243	0.26108	0.00013689	-0.2555	-0.00013396	0.0055749	2.923E-06	524.3134250559259	27.413	1.2399	27.401	27.07	28.31	-0.01156					133	43	5	0	0	0	1.4498E-07	3	4644	4596;4644;4690		174.48	118.3	1	5901900			42631	3750	24593	24594	52037;52038;52039	52038					0.09098906374038052
SIFPFSII	8	Unmodified	_SIFPFSII_					0	0	0		ENST00000366959.4_1_1:213447250-213447538:+|nuORF	ENST00000366959.4_1_1:213447250-213447538:+|nuORF	ENST00000366959.4_1_1:213447250-213447538:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.2654724121094	2	462.265479	922.516405	0.14182	6.5558E-05	1.3226	0.0006114	1.4644	0.00067695	462.2664863103895	88.736	0.92242	88.736	88.487	89.41	0					104	41	4	0	0	0	0.058048	2	23477	23432;23477		74.396	0	1	1216900			42632	9718	24594	24595	52040;52041	52041					0.052047585339551006
SIFPFSII	8	Unmodified	_SIFPFSII_					0	0	0		ENST00000366959.4_1_1:213447250-213447538:+|nuORF	ENST00000366959.4_1_1:213447250-213447538:+|nuORF	ENST00000366959.4_1_1:213447250-213447538:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.2652587890625	2	462.265479	922.516405	0.12258	5.6664E-05	1.7287	0.00079913	1.8513	0.0008558	462.26670575001555	88.619	1.1812	88.708	88.414	89.595	0.089195					123	56	4	0	0	0	0.058048	3	23395	23395;23439;23480		74.396	0	1	2024200			42633	9718	24594	24595	52042;52043;52044	52042					0.052047585339551006
SIFPFSII	8	Unmodified	_SIFPFSII_					0	0	0		ENST00000366959.4_1_1:213447250-213447538:+|nuORF	ENST00000366959.4_1_1:213447250-213447538:+|nuORF	ENST00000366959.4_1_1:213447250-213447538:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.2652893066406	2	462.265479	922.516405	0.26286	0.00012151	1.4836	0.00068581	1.7465	0.00080732	462.2665661327947	88.772	1.335	88.769	87.952	89.287	-0.0028458					111	59	4	0	0	0	0.058048	2	23426	23426;23466		74.396	0	1	2218300			42634	9718	24594	24595	52045;52046	52045					0.052047585339551006
SIFPGVPLTL	10	Unmodified	_SIFPGVPLTL_					0	0	0		ENST00000440088.5_1_7:77325266-77325488:-|nuORF	ENST00000440088.5_1_7:77325266-77325488:-|nuORF	ENST00000440088.5_1_7:77325266-77325488:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3282470703125	2	522.310418	1042.60628	0.52172	0.0002725	3.3415	0.0017453	3.8633	0.0020178	522.3128349524486	89.368	0.58615	89.368	89.051	89.637	-0.00081635					48	32	2	0	0	0	0.3258	1	23606	23606		17.113	5.9984	1	150260			42635	10548	24595	24596	52047	52047					0.08668388142518779
SIFSEALLK	9	Unmodified	_SIFSEALLK_					0	0	0		ENSG00000113790|ENST00000231887|EHHADH;nc|ENSG00000113790|Q08426-2|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2923278808594	2	504.292225	1006.5699	0.38874	0.00019604	0.015975	8.0563E-06	0.40471	0.00020409	504.2921856659326	60.425	0.92628	60.425	60.126	61.052	0					111	33	4	0	0	0	0.00010125	5	14779	14733;14779;14831;14883;14936		140.63	54.992	1	21778000			42636	2531	24596	24597	52048;52049;52050;52051;52052	52049					0.0668751124579785
SIFSEALLK	9	Unmodified	_SIFSEALLK_					0	0	0		ENSG00000113790|ENST00000231887|EHHADH;nc|ENSG00000113790|Q08426-2|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2923278808594	2	504.292225	1006.5699	0.19791	9.9803E-05	0.17039	8.5927E-05	0.3683	0.00018573	504.2922548114942	60.34	0.9864	60.436	60.077	61.063	0.095089					137	35	5	0	0	0	0.00010125	4	14745	14695;14745;14786;14834		140.63	54.992	1	19774000			42637	2531	24596	24597	52053;52054;52055;52056	52054					0.0668751124579785
SIFSEALLK	9	Unmodified	_SIFSEALLK_					0	0	0		ENSG00000113790|ENST00000231887|EHHADH;nc|ENSG00000113790|Q08426-2|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.29217529296875	2	504.292225	1006.5699	0.48352	0.00024384	-0.061046	-3.0785E-05	0.42248	0.00021305	504.292138269952	60.413	0.8819	60.402	60.108	60.99	-0.011486					117	32	5	0	0	0	0.00010125	4	14727	14727;14771;14814;14857		140.63	51.782	1	20689000			42638	2531	24596	24597	52057;52058;52059;52060	52057					0.0668751124579785
SIFSKFTSK	9	Unmodified	_SIFSKFTSK_					0	0	0		nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7899169921875	2	522.78985	1043.56515	0.52295	0.00027339	-0.20681	-0.00010812	0.31614	0.00016527	522.7896707386429	40.173	1.2932	40.173	39.803	41.096	0					111	46	4	0	0	0	0.0022427	3	8514	8514;8568;8617		108.26	52.759	1	2343100			42639	984	24597	24598	52061;52062;52063	52061					0.04510627103036313
SIFSKFTSK	9	Unmodified	_SIFSKFTSK_					0	0	0		nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7899780273438	2	522.78985	1043.56515	0.59541	0.00031128	-0.59371	-0.00031038	0.0017054	8.9158E-07	522.7895318901035	39.901	0.75885	39.994	39.635	40.394	0.09267					80	26	4	0	0	0	0.0013573	3	8475	8427;8475;8523		118.21	50.129	1	2194500			42640	984	24597	24598	52064;52065;52066	52065					0.04510627103036313
SIFSKFTSK	9	Unmodified	_SIFSKFTSK_					0	0	0		nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7899169921875	2	522.78985	1043.56515	0.50893	0.00026606	-0.18267	-9.5499E-05	0.32626	0.00017056	522.7897000468682	39.933	1.1041	40.032	39.676	40.78	0.099403					91	39	4	0	0	0	0.0027197	3	8472	8419;8472;8523		104.48	43.127	1	2280100			42641	984	24597	24598	52067;52068;52069	52068					0.04510627103036313
SIFSYLYLQ	9	Unmodified	_SIFSYLYLQ_					0	0	0			REV__ENSG00000090674|ENST00000264079|MCOLN1	REV__ENSG00000090674|ENST00000264079|MCOLN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2796630859375	2	567.297507	1132.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.375	1	69.375	68.875	69.875	0								0	0	0	0.16039	1	17528	17528		32.305	1.6689	1		+		42642	14048	24598	24599	52070	52070					0.019474939002293468
SIFTGSSTTL	10	Unmodified	_SIFTGSSTTL_					0	0	0			REV__CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant	REV__CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2579345703125	2	507.261122	1012.50769	0.18461	9.3646E-05	-0.79389	-0.00040271	-0.60927	-0.00030906	507.2579349166225	31.638	0.78568	31.68	31.183	31.968	0.042364					43	27	3	0	0	0	0.11922	1	5964	5964		43.858	9.7559	1	1055600	+		42643	13290	24599	24600	52071	52071					0.0019374010680621723
SIFVPPFISK	10	Unmodified	_SIFVPPFISK_					0	0	0		ENSG00000105339|ENST00000519811|DENND3;DENND3|p.F233Sfs*35|1|0.08|ENSG00000105339|chr8:141151699-141151700|-/AGTGG|frameshift_variant;ENST00000518198.1_1_8:142138775-142151424:+|nuORF	ENSG00000105339|ENST00000519811|DENND3	ENSG00000105339|ENST00000519811|DENND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8316040039062	2	567.831517	1133.64848	0.1159	6.5811E-05	0.1887	0.00010715	0.3046	0.00017296	567.8315733298155	69.678	1.2303	69.678	69.229	70.46	0					125	44	4	0	0	0	0.076018	2	17618	17618;17659		53.317	15.343	1	2732000			42644	1967	24600	24601	52072;52073	52072					0.08700363550883594
SIFVPPFISK	10	Unmodified	_SIFVPPFISK_					0	0	0		ENSG00000105339|ENST00000519811|DENND3;DENND3|p.F233Sfs*35|1|0.08|ENSG00000105339|chr8:141151699-141151700|-/AGTGG|frameshift_variant;ENST00000518198.1_1_8:142138775-142151424:+|nuORF	ENSG00000105339|ENST00000519811|DENND3	ENSG00000105339|ENST00000519811|DENND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.83154296875	2	567.831517	1133.64848	0.23937	0.00013592	0.087072	4.9442E-05	0.32644	0.00018536	567.8314727797872	69.675	1.1276	69.741	69.284	70.412	0.066048					123	39	4	0	0	0	0.076018	1	17646	17646		53.317	13.367	1	2693100			42645	1967	24600	24601	52074	52074					0.08700363550883594
SIFVPPFISK	10	Unmodified	_SIFVPPFISK_					0	0	0		ENSG00000105339|ENST00000519811|DENND3;DENND3|p.F233Sfs*35|1|0.08|ENSG00000105339|chr8:141151699-141151700|-/AGTGG|frameshift_variant;ENST00000518198.1_1_8:142138775-142151424:+|nuORF	ENSG00000105339|ENST00000519811|DENND3	ENSG00000105339|ENST00000519811|DENND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.83154296875	2	567.831517	1133.64848	0.18586	0.00010554	0.14439	8.1987E-05	0.33025	0.00018752	567.831503457558	69.693	1.0387	69.671	69.293	70.332	-0.022087					122	37	4	0	0	0	0.076018	2	17618	17618;17668		53.317	13.367	1	2774700			42646	1967	24600	24601	52075;52076	52075					0.08700363550883594
SIFWMRNFSSL	11	Unmodified	_SIFWMRNFSSL_					0	0	0		ENST00000256015.4_1_12:92536903-92537026:-|nuORF	ENST00000256015.4_1_12:92536903-92537026:-|nuORF	ENST00000256015.4_1_12:92536903-92537026:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7977600097656	3	463.232424	1386.67544	-0.84047	-0.00038933	0.012269	5.6834E-06	-0.8282	-0.00038365	463.23242710110804	35.015	0.44633	35.093	34.837	35.283	0.077377					17	15	2	0	0	0	0.3322	1	6981	6981		2.6312	1.4164	1	156760			42647	8925	24601	24602	52077	52077					-0.0024289590023727214
SIFYCSSGFSK	11	Unmodified	_SIFYCSSGFSK_					0	0	0			REV__nc|ENSG00000205846|Q6EIG7-2|CLEC6A	REV__nc|ENSG00000205846|Q6EIG7-2|CLEC6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5875549316406	3	409.190113	1224.54851	-1.0552	-0.00043177	0.072298	2.9584E-05	-0.98289	-0.00040219	409.52337136924086	34.6	0.14606	34.6	34.5	34.646	0					6	4	2	0	0	0	0.33119	1	6829	6829		0.40827	0	1	27270	+		42648	19004	24602	24603	52078	52078					-0.05478241845230514
SIGDIFLKY	9	Unmodified	_SIGDIFLKY_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.274169921875	2	528.292225	1054.5699	0.55183	0.00029153	-0.34557	-0.00018256	0.20626	0.00010896	528.2918013631702	68.946	0.28127	68.946	68.786	69.067	0					17	9	2	0	0	0	0.10058	1	17408	17408		45.7	11.597	1	182130			42649	2557;12660	24603	24604	52079	52079					0.044795112457904906
SIGDIFLKY	9	Unmodified	_SIGDIFLKY_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2742309570312	2	528.292225	1054.5699	0.54775	0.00028937	-0.93747	-0.00049526	-0.38972	-0.00020589	528.2916061371129	68.943	0.37762	69.015	68.806	69.183	0.071938					21	13	2	0	0	0	0.15943	1	17393	17393		32.786	9.6373	1	194230			42650	2557;12660	24603	24604	52080	52080					0.044795112457904906
SIGDIFLKY	9	Unmodified	_SIGDIFLKY_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2742309570312	2	528.292225	1054.5699	0.49438	0.00026118	-0.90205	-0.00047654	-0.40766	-0.00021537	528.2915386153716	68.98	0.33562	68.96	68.79	69.126	-0.019157					19	11	2	0	0	0	0.11234	1	17402	17402		51.63	17.527	1	232960			42651	2557;12660	24603	24604	52081	52081					0.044795112457904906
SIGDNLVRLL	10	Unmodified	_SIGDNLVRLL_					0	0	0			REV__nc|ENSG00000266733|Q9UFV1|TBC1D29P	REV__nc|ENSG00000266733|Q9UFV1|TBC1D29P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7774047851562	2	550.327131	1098.63971	0.63492	0.00034941	-0.8753	-0.0004817	-0.24038	-0.00013229	550.3267216378971	45.449	0.4049	45.449	45.315	45.72	0					20	14	2	0	0	0	0.3156	1	10226	10226		6.7232	0.51738	1	101940	+		42652	23231	24604	24605	52082	52082					0.09433389914443069
SIGERPALQ	9	Unmodified	_SIGERPALQ_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7886962890625	2	485.769448	969.524344	0.29452	0.00014307	1.6816	0.00081686	1.9761	0.00095993	485.77031480745967	39.547	0.88197	39.646	39.128	40.01	0.099407					46	31	2	0	0	0	0.21905	1	8313	8313		23.148	1.4018	1	220120	+		42653	15844	24605	24606	52083	52083					0.03836285783427229
SIGGGTDNVVE	11	Unmodified	_SIGGGTDNVVE_					0	0	0		ENST00000422095.1_3_7:92000906-92025787:+|nuORF	ENST00000422095.1_3_7:92000906-92025787:+|nuORF	ENST00000422095.1_3_7:92000906-92025787:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.8049926757812	2	524.251286	1046.48802	0.63911	0.00033506	1.0766	0.0005644	1.7157	0.00089946	524.251812957761	49.312	0.5177	49.312	48.97	49.488	0					25	18	2	0	0	0	0.30294	1	11353	11353		19.362	0	1	135630			42654	10378	24606	24607	52084	52084					-0.03336635903929164
SIGGTFVENL	10	Unmodified	_SIGGTFVENL_					0	0	0			REV__nc|ENSG00000112941|Q5XG87-2|TENT4A	REV__nc|ENSG00000112941|Q5XG87-2|TENT4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2954711914062	2	518.769114	1035.52368	0.38654	0.00020053	0.39221	0.00020347	0.77875	0.00040399	518.7695080021921	62.918	0.38549	63.013	62.736	63.122	0.095722					24	13	2	0	0	0	0.26638	1	15557	15557		18.146	0	1	538310	+		42655	14793	24607	24608	52085	52085					0.007334463437246086
SIGHCKCTRK	10	Unmodified	_SIGHCKCTRK_					0	0	0			REV__nc|ENSG00000061492|Q9H1J5|WNT8A	REV__nc|ENSG00000061492|Q9H1J5|WNT8A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3064575195312	2	566.789335	1131.56412	0.7009	0.00039726	-2.0429	-0.0011579	-1.342	-0.00076061	566.7884116655426	32.2	0.57941	32.246	32.057	32.637	0.046425					48	20	3	0	0	0	0.3258	1	6133	6133		17.113	0	1	283780	+		42656	13625	24608	24609	52086	52086					0.0035976619083157857
SIGLLSGSGW	10	Unmodified	_SIGLLSGSGW_					0	0	0		ENSG00000174327|ENST00000308027|SLC16A13	ENSG00000174327|ENST00000308027|SLC16A13	ENSG00000174327|ENST00000308027|SLC16A13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.77679443359375	2	488.758549	975.502546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.443	1	36.529	36.029	37.029	0.08625								0	0	0	0.35216	1	7397	7397		13.906	2.2658	1				42657	6787	24609	24610	52087	52087					0.013814810348662832
SIGLTKLLL	9	Unmodified	_SIGLTKLLL_					0	0	0			REV__ENSG00000164265|ENST00000296694|SCGB3A2	REV__ENSG00000164265|ENST00000296694|SCGB3A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.75347900390625	2	479.320786	956.627018	0.12651	6.0641E-05	-0.036014	-1.7262E-05	0.0905	4.3379E-05	479.320758028718	58.98	0.67638	58.98	58.832	59.508	0					38	23	2	0	0	0	0.2451	1	14395	14395		10.824	6.8795	1	210910	+		42658	17143	24610	24611	52088	52088					0.14696978522192694
SIGMIKQLRN	10	Unmodified	_SIGMIKQLRN_					0	0	0			REV__nc|ENSG00000166391|Q3SYC2-2|MOGAT2	REV__nc|ENSG00000166391|Q3SYC2-2|MOGAT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8131103515625	2	580.334433	1158.65431	0.14381	8.346E-05	0.73042	0.00042389	0.87424	0.00050735	580.3346894010621	66.964	1.0829	66.95	66.791	67.874	-0.013588					58	37	2	0	0	0	0.31958	1	16991	16991		5.2969	1.3525	1	164760	+		42659	17316	24611	24612	52089	52089					0.08133138790913108
SIGPAESHPH	10	Unmodified	_SIGPAESHPH_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8014526367188	2	516.24888	1030.48321	0.41254	0.00021297	2.2636	0.0011686	2.6762	0.0013816	516.7528389960538	30.414	0.088636	30.414	30.359	30.448	0					4	2	2	0	0	0	0.31629	1	5571	5571		10.074	2.1638	1	29841			42660	5702	24612	24613	52090	52090					-0.030814752560445413
SIGPLMPVLA	10	Unmodified	_SIGPLMPVLA_					0	0	0		nc|ENSG00000240403|P43630-2|KIR3DL2;ENSG00000240403|ENST00000326321|KIR3DL2	nc|ENSG00000240403|P43630-2|KIR3DL2	nc|ENSG00000240403|P43630-2|KIR3DL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7743835449219	2	499.291171	996.567789	0.6368	0.00031795	0.078306	3.9098E-05	0.7151	0.00035704	499.29132157372896	74.93	0.67353	74.899	74.613	75.286	-0.031487					42	24	2	0	0	0	0.31165	1	19151	19151		10.824	1.4765	1	450560			42661	8521	24613	24614	52091	52091					0.06936759236350554
SIGQVFLLK	9	Unmodified	_SIGQVFLLK_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.8107604980469	2	502.810585	1003.60662	0.11166	5.6144E-05	0.81099	0.00040777	0.92265	0.00046392	502.81072673982743	59.659	0.68508	59.659	59.38	60.065	0					54	23	3	0	0	0	0.00051734	3	14529	14529;14575;14605		128.93	53.172	1	2878700			42662	3834	24614	24615	52092;52093;52094	52092					0.10495807862378115
SIGQVFLLK	9	Unmodified	_SIGQVFLLK_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.8108825683594	2	502.810585	1003.60662	0.10911	5.4861E-05	0.70657	0.00035527	0.81568	0.00041013	502.8106908884422	59.577	0.93797	59.672	59.355	60.292	0.095093					62	33	3	0	0	0	2.5511E-05	2	14529	14483;14529		152.89	56.775	1	2748300			42663	3834	24614	24615	52095;52096	52096					0.10495807862378115
SIGQVFLLK	9	Unmodified	_SIGQVFLLK_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.8108215332031	2	502.810585	1003.60662	0.39482	0.00019852	0.6635	0.00033361	1.0583	0.00053213	502.8106349968858	59.67	1.0384	59.658	59.312	60.35	-0.011486					71	36	3	0	0	0	5.4053E-05	2	14510	14510;14562		148.27	55.615	1	2619000			42664	3834	24614	24615	52097;52098	52097					0.10495807862378115
SIGRLENFTF	10	Unmodified	_SIGRLENFTF_					0	0	0		HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|158|1|anti-sense	HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|158|1|anti-sense	HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|158|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.28076171875	2	592.308938	1182.60332	0.67971	0.0004026	-2.6591	-0.001575	-1.9794	-0.0011724	592.8089870481805	48.087	0.39939	48.087	47.987	48.386	0					22	13	3	0	0	0	0.26638	1	11063	11063		18.146	8.7632	1	496900			42665	12419	24615	24616	52099	52099					0.019325130177094252
SIGSNLLGSR	10	Unmodified	_SIGSNLLGSR_					0	0	0			REV__ENST00000547670.5_1_12:49494396-49503620:-|nuORF	REV__ENST00000547670.5_1_12:49494396-49503620:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7653503417969	2	502.28018	1002.54581	0.5653	0.00028394	-0.79262	-0.00039812	-0.22732	-0.00011418	502.78027326522675	36.089	0.37399	36.175	35.898	36.272	0.08625					30	13	3	0	0	0	0.27655	1	7305	7305		24.882	0	1	194350	+		42666	22182	24616	24617	52100	52100					0.044636708121629454
SIGTAVVGGLM	11	Oxidation (M)	_SIGTAVVGGLM(Oxidation (M))_		SIGTAVVGGLM(1)		SIGTAVVGGLM(50)	0	0	1		ENSG00000112077|ENST00000371175|RHAG	ENSG00000112077|ENST00000371175|RHAG	ENSG00000112077|ENST00000371175|RHAG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.7734680175781	2	510.773342	1019.53213	0.529	0.0002702	-0.66982	-0.00034213	-0.14082	-7.1925E-05	510.77325443557294	32.593	1.0289	32.593	31.982	33.011	0					95	36	4	0	0	0	0.061445	1	6232	6232		49.933	15.001	1	467970			42667	2408	24617	24618	52101	52101		296			0.02314676988703468
SIGTAVVGGLM	11	Oxidation (M)	_SIGTAVVGGLM(Oxidation (M))_		SIGTAVVGGLM(1)		SIGTAVVGGLM(56)	0	0	1		ENSG00000112077|ENST00000371175|RHAG	ENSG00000112077|ENST00000371175|RHAG	ENSG00000112077|ENST00000371175|RHAG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.77349853515625	2	510.773342	1019.53213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.511	1	32.567	32.067	33.067	0.055309								0	0	0	0.050786	1	6203	6203		56.177	12.405	1				42668	2408	24617	24618	52102	52102		296			0.02314676988703468
SIGTNNFLR	9	Unmodified	_SIGTNNFLR_					0	0	0		ENST00000511977.1_1_4:1824675-1834605:-|nuORF;ENSG00000168924|ENST00000302787|LETM1	ENST00000511977.1_1_4:1824675-1834605:-|nuORF	ENST00000511977.1_1_4:1824675-1834605:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8082580566406	2	511.274898	1020.53524	0.52839	0.00027015	-1.1276	-0.0005765	-0.59918	-0.00030635	511.2740309889568	32.368	0.96819	32.423	31.922	32.891	0.055309					68	34	3	0	0	0	0.21905	1	6197	6197		16.942	2.104	1	312080			42669	6314	24618	24619	52103	52103					0.0257968815770937
SIGTPVFPGF	10	Unmodified	_SIGTPVFPGF_					0	0	0			REV__ENST00000558270.1_1_15:41272423-41275357:-|nuORF	REV__ENST00000558270.1_1_15:41272423-41275357:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8007507324219	2	511.271293	1020.52803	0.090892	4.6471E-05	-2.2736	-0.0011624	-2.1828	-0.001116	511.26913090360614	38.456	0.94551	38.456	37.871	38.816	0					60	33	3	0	0	0	0.28434	1	8021	8021		9.3831	0	1	198380	+		42670	22279	24619	24620	52104	52104					0.018589555572816607
SIGVRHHF	8	Unmodified	_SIGVRHHF_					0	0	0			REV__ENST00000474513.6_1_3:63850293-63850383:+|nuORF	REV__ENST00000474513.6_1_3:63850293-63850383:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.2928161621094	2	476.759218	951.503883	0.48849	0.00023289	-1.4385	-0.00068581	-0.94999	-0.00045292	476.7584766919752	48.24	0.27958	48.284	48.065	48.344	0.04332					14	10	2	0	0	0	0.31375	1	11022	11022		8.5933	0	1	96498	+		42671	21396	24620	24621	52105	52105					0.0261915991427486
SIGWCYCCSL	10	Unmodified	_SIGWCYCCSL_					0	0	0		ENST00000473758.5_1_14:23536847-23537051:-|nuORF	ENST00000473758.5_1_14:23536847-23537051:-|nuORF	ENST00000473758.5_1_14:23536847-23537051:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8189086914062	2	567.724481	1133.43441	0.4884	0.00027727	2.2172	0.0012588	2.7056	0.0015361	567.7255595214149	44.866	0.27076	44.866	44.771	45.041	0					11	9	2	0	0	0	0.31691	1	10010	10010		2.9952	0	1	111560			42672	10909	24621	24622	52106	52106					-0.1269717120333098
SIGYSPAVTF	10	Unmodified	_SIGYSPAVTF_					0	0	0			REV__ENST00000536163.5_2_7:141360786-141361083:-|nuORF	REV__ENST00000536163.5_2_7:141360786-141361083:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2846069335938	2	521.266207	1040.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.815	1	77.784	77.284	78.284	-0.031334								0	0	0	0.26329	1	20088	20088		32.305	1.6689	1		+		42673	22079	24622	24623	52107	52107					-0.0007765216796542518
SIGYTNFTLEK	11	Unmodified	_SIGYTNFTLEK_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	nc|ENSG00000142173|P12110-2|COL6A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.5550842285156	3	424.887199	1271.63977	0.081961	3.4824E-05	-0.032577	-1.3842E-05	0.049384	2.0983E-05	424.8873499862606	30.029	1.5142	30.029	28.845	30.359	0					169	54	5	0	0	0	0.45605	1	5262	5262		1.7824	0	1	1340200			42674	4426;12731	24623	24624	52108	52108					0.014813451237614572
SIHDFIVAQVY	11	Unmodified	_SIHDFIVAQVY_					0	0	0			REV__nc|ENSG00000197826|Q6V702-1|CFAP299	REV__nc|ENSG00000197826|Q6V702-1|CFAP299	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.3379516601562	2	646.337695	1290.66084	0.20192	0.00013051	-0.58923	-0.00038084	-0.3873	-0.00025033	646.3375258055177	22.848	1.3241	22.848	22.563	23.887	0					147	45	5	0	0	0	0.47649	1	3503	3503		1.1933	0.12188	1	3927400	+		42675	23158	24624	24625	52109	52109					0.02713355223295366
SIHGRPVTK	9	Unmodified	_SIHGRPVTK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;FAM13A|p.F877Rfs*3|1|0.19|ENSG00000138640|chr4:88737484-88737490|GAAGAAG/-|frameshift_variant;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.79339599609375	2	497.793258	993.571963	0.038863	1.9346E-05	0.25381	0.00012634	0.29267	0.00014569	497.7933964215984	12.686	0.70073	12.686	12.526	13.227	0					55	24	3	0	0	0	0.0058682	1	209	209		85.764	53.459	1	1058800			42676	4170	24625	24626	52110	52110					0.0749198477428763
SIHGRPVTK	9	Unmodified	_SIHGRPVTK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;FAM13A|p.F877Rfs*3|1|0.19|ENSG00000138640|chr4:88737484-88737490|GAAGAAG/-|frameshift_variant;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.79351806640625	2	497.793258	993.571963	0.078473	3.9063E-05	0.27163	0.00013522	0.35011	0.00017428	497.793384751189	12.693	0.72703	12.593	12.433	13.16	-0.099291					58	24	4	0	0	0	0.0035713	1	216	216		97.741	55.901	1	890280			42677	4170	24625	24626	52111	52111					0.0749198477428763
SIHGRPVTK	9	Unmodified	_SIHGRPVTK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;FAM13A|p.F877Rfs*3|1|0.19|ENSG00000138640|chr4:88737484-88737490|GAAGAAG/-|frameshift_variant;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.79339599609375	2	497.793258	993.571963	-0.080005	-3.9826E-05	0.37225	0.0001853	0.29225	0.00014548	497.79344191927004	12.726	0.69737	12.659	12.491	13.189	-0.067496					57	23	4	0	0	0	0.0047555	1	220	220		88.364	48.406	1	990840			42678	4170	24625	24626	52112	52112					0.0749198477428763
SIHILLGR	8	Unmodified	_SIHILLGR_					0	0	0		ENSG00000135898|ENST00000650999|GPR55	ENSG00000135898|ENST00000650999|GPR55	ENSG00000135898|ENST00000650999|GPR55	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2168884277344	2	454.787444	907.560336	-0.013885	-6.3147E-06	0.25677	0.00011677	0.24288	0.00011046	454.78736830439993	18.247	0.71568	18.13	17.866	18.582	-0.11739					47	24	3	0	0	0	0.344	1	1809	1809		2.5775	0	1	159600			42679	3914	24626	24627	52113	52113					0.10285787750956388
SIHILLGR	8	Unmodified	_SIHILLGR_					0	0	0		ENSG00000135898|ENST00000650999|GPR55	ENSG00000135898|ENST00000650999|GPR55	ENSG00000135898|ENST00000650999|GPR55	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	454.787444	907.560336	0.023919	1.0878E-05	0.10927	4.9695E-05	0.13319	6.0572E-05	454.78735618530726	18.108	0.69923	18.108	17.835	18.535	0	-0.039827	-0.0001157	NaN	2.5775	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115130			42680	3914	24626	24627							0.10285787750956388
SIHILLGR	8	Unmodified	_SIHILLGR_					0	0	0		ENSG00000135898|ENST00000650999|GPR55	ENSG00000135898|ENST00000650999|GPR55	ENSG00000135898|ENST00000650999|GPR55	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	454.787444	907.560336	-0.12372	-5.6268E-05	0.50125	0.00022796	0.37753	0.0001717	454.78742407159797	18.264	0.67288	18.206	17.927	18.6	-0.058174	0.057734	0.00024084	NaN	2.5775	43	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170500			42681	3914	24626	24627							0.10285787750956388
SIHLALTVMV	10	Unmodified	_SIHLALTVMV_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2794189453125	2	542.315177	1082.6158	0.99922	0.00054189	0.66988	0.00036329	1.6691	0.00090518	542.3152635262986	77.577	0.55232	77.545	77.287	77.84	-0.031334					29	19	2	0	0	0	0.31358	1	19973	19973		13.906	13.906	1	215790			42682	6498	24627	24628	52114	52114					0.07779833156382665
SIHTIRRIPR	10	Unmodified	_SIHTIRRIPR_					0	0	0			REV__LONP2|p.L685Qfs*5|1|0.06|ENSG00000102910|chr16:48347621-48347622|-/AAAGTCCTTGT|frameshift_variant	REV__LONP2|p.L685Qfs*5|1|0.06|ENSG00000102910|chr16:48347621-48347622|-/AAAGTCCTTGT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.2278747558594	3	416.926434	1247.75747	0.09124	3.804E-05	0.96804	0.0004036	1.0593	0.00044164	416.92698952805057	29.951	0.14628	29.951	29.888	30.034	0					5	4	2	0	0	0	0.32137	1	5415	5415		1.7423	1.0446	1	27944	+		42683	14341	24628	24629	52115	52115					0.14350387293734457
SIHTLKVVL	9	Unmodified	_SIHTLKVVL_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2771301269531	2	505.32386	1008.63317	0.41484	0.00020963	-0.10674	-5.394E-05	0.3081	0.00015569	505.32378730913086	48.986	0.5183	48.986	48.749	49.267	0					39	18	3	0	0	0	0.25879	1	11336	11336		2.0598	0	1	661790	+		42684	14358	24629	24630	52116	52116					0.12919496753693238
SIHTQDPYL	9	Unmodified	_SIHTQDPYL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.E1876Lfs*12|1|0.03|ENSG00000116641|chr1:62476133-62476134|-/GTGCAATTTTGTTTGAGAAAGA|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.3214111328125	2	537.266739	1072.51892	0.51515	0.00027677	1.6149	0.00086765	2.1301	0.0011444	537.2678874162405	56.805	0.61179	56.883	56.485	57.097	0.078674					33	22	2	0	0	0	0.24913	1	13725	13725		4.3292	0.38484	1	163590			42685	2734	24630	24631	52117	52117					-0.014434377990482972
SIIAARCR	8	Unmodified	_SIIAARCR_					0	0	0		ENST00000566482.5_1_16:50060318-50068094:+|nuORF;ENSG00000205423|ENST00000427478|CNEP1R1;nc|ENSG00000205423|Q8N9A8-2|CNEP1R1	ENST00000566482.5_1_16:50060318-50068094:+|nuORF	ENST00000566482.5_1_16:50060318-50068094:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.6358642578125	2	445.255454	888.496355	0.1607	7.1553E-05	-0.86045	-0.00038312	-0.69975	-0.00031157	445.2539542113744	33.907	0.52751	33.973	33.711	34.239	0.066704					26	18	2	0	0	0	0.34272	1	6670	6670		7.9102	0	1	136230			42686	8290	24631	24632	52118	52118					0.047646843223333235
SIIAYLQKK	9	Unmodified	_SIIAYLQKK_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.32958984375	2	532.329142	1062.64373	0.30997	0.00016501	-0.061886	-3.2944E-05	0.24809	0.00013206	532.329021580873	40.79	0.37108	40.889	40.724	41.095	0.099407					25	13	3	0	0	0	0.24688	1	8748	8748		14.838	5.4551	1	250460			42687	3034	24632	24633	52119	52119					0.11491479408141458
SIIAYLQKK	9	Unmodified	_SIIAYLQKK_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	532.329142	1062.64373	0.28242	0.00015034	-0.2344	-0.00012478	0.048026	2.5566E-05	532.3289654260587	41.153	0.45277	41.153	40.902	41.355	0	0.1559	5.7669E-05	NaN	30.637	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232840			42688	3034	24632	24633							0.11491479408141458
SIIAYLQKK	9	Unmodified	_SIIAYLQKK_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	532.329142	1062.64373	0.44008	0.00023427	-0.48459	-0.00025796	-0.044514	-2.3696E-05	532.3288621363686	40.856	0.41914	40.948	40.745	41.165	0.09267	-0.048315	-0.0002087	NaN	30.637	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231380			42689	3034	24632	24633							0.11491479408141458
SIICILLPF	9	Unmodified	_SIICILLPF_					0	0	0			REV__nc|ENSG00000111452|Q6QNK2-2|ADGRD1	REV__nc|ENSG00000111452|Q6QNK2-2|ADGRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8040771484375	2	509.803914	1017.59328	0.44345	0.00022607	-0.15903	-8.1072E-05	0.28442	0.000145	509.80377434116815	88.775	1.2674	88.775	88.273	89.541	0					136	62	3	0	0	0	0.32733	1	23497	23497		4.756	0.42677	1	448110	+		42690	14722	24633	24634	52120	52120					0.08518233758775295
SIICKPKRRH	10	Unmodified	_SIICKPKRRH_					0	0	0			REV__ENST00000488482.1_1_10:91403596-91403683:-|nuORF	REV__ENST00000488482.1_1_10:91403596-91403683:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8695068359375	2	619.369141	1236.72373	0.37078	0.00022965	1.1818	0.00073194	1.5525	0.00096159	619.370569418945	91.757	1.4647	91.757	91.303	92.768	0.00046539					206	95	3	0	0	0	0.38515	1	24514	24514		6.2058	0.47393	1	1022300	+		42691	21575	24634	24635	52121	52121					0.11483642530333782
SIIETLRQK	9	Unmodified	_SIIETLRQK_					0	0	0		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	nc|ENSG00000080824|P07900-2|HSP90AA1	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.3271484375	2	544.327131	1086.63971	0.10149	5.5244E-05	0.31352	0.00017066	0.41501	0.0002259	544.3272408284968	34.295	0.84201	34.295	33.997	34.839	0					80	29	4	0	0	0	7.3453E-05	3	6772	6725;6772;6839		145.13	63.239	1	1870900			42692	12596	24635	24636	52122;52123;52124	52123					0.09985389914436382
SIIETLRQK	9	Unmodified	_SIIETLRQK_					0	0	0		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	nc|ENSG00000080824|P07900-2|HSP90AA1	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3272094726562	2	544.327131	1086.63971	0.35263	0.00019195	0.057142	3.1104E-05	0.40978	0.00022305	544.3271202643612	34.186	0.84845	34.253	33.93	34.779	0.06636					83	30	4	0	0	0	0.0019475	3	6731	6681;6731;6777		110.67	28.785	1	2022700			42693	12596	24635	24636	52125;52126;52127	52126					0.09985389914436382
SIIETLRQK	9	Unmodified	_SIIETLRQK_					0	0	0		nc|ENSG00000080824|P07900-2|HSP90AA1;ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	nc|ENSG00000080824|P07900-2|HSP90AA1	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3272094726562	2	544.327131	1086.63971	0.4185	0.0002278	0.024071	1.3103E-05	0.44257	0.0002409	544.3270874492949	34.138	0.91874	34.205	33.907	34.826	0.0667					78	32	4	0	0	0	0.00078391	3	6710	6661;6710;6762		125.53	43.639	1	2218900			42694	12596	24635	24636	52128;52129;52130	52129					0.09985389914436382
SIIGQFLPV	9	Unmodified	_SIIGQFLPV_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.80029296875	2	487.289485	972.564418	0.48499	0.00023633	1.3502	0.00065793	1.8352	0.00089426	487.29056656114454	84.075	0.39182	84.152	83.998	84.39	0.077095					24	15	2	0	0	0	0.25989	1	22055	22055		14.838	0.25658	1	91872	+		42695	16816	24636	24637	52131	52131					0.0770383245398989
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.3135986328125	2	500.313492	998.612431	0.37993	0.00019008	0.12783	6.3955E-05	0.50776	0.00025404	500.31352494587986	70.192	0.9276	70.192	69.895	70.823	0					96	33	4	0	0	0	0.0008224	4	17779	17736;17779;17824;17867		125.04	46.31	1	5425900			42696	6643	24637	24638	52132;52133;52134;52135	52133					0.11306906374034043
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.31365966796875	2	500.313492	998.612431	0.36004	0.00018013	0.18295	9.1532E-05	0.54298	0.00027166	500.3135487825491	70.225	1.0826	70.291	69.939	71.022	0.06604					116	38	5	0	0	0	0.0008224	4	17773	17725;17773;17823;17869		125.04	42.508	1	5066100			42697	6643	24637	24638	52136;52137;52138;52139	52137					0.11306906374034043
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3135986328125	2	500.313492	998.612431	0.37634	0.00018829	0.16041	8.0256E-05	0.53675	0.00026854	500.31354407677634	70.286	0.92183	70.264	69.937	70.859	-0.022087					99	32	4	0	0	0	0.0008224	4	17795	17745;17795;17843;17886		125.04	46.31	1	4960400			42698	6643	24637	24638	52140;52141;52142;52143	52141					0.11306906374034043
SIIGYLIF	8	Unmodified	_SIIGYLIF_					0	0	0		ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.28369140625	2	463.273304	924.532055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.03	1	90.121	89.621	90.621	0.090668								0	0	0	0.37664	1	23841	23841		2.5775	0	1				42699	3345	24638	24639	52144	52144					0.0667704505100346
SIIHQMEKF	9	Unmodified	_SIIHQMEKF_					0	0	0		ENST00000585990.5_1_17:73910371-73916335:-|nuORF;ENST00000593156.1_1_17:73913837-73918141:-|nuORF;nc|ENSG00000188878|Q8TES7-2|FBF1;nc|ENSG00000188878|Q8TES7|FBF1;nc|ENSG00000188878|Q8TES7-5|FBF1;ENSG00000188878|ENST00000636174|FBF1	ENST00000585990.5_1_17:73910371-73916335:-|nuORF	ENST00000585990.5_1_17:73910371-73916335:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2794189453125	2	566.794609	1131.57467	0.16566	9.3895E-05	3.8947	0.0022075	4.0603	0.0023014	566.7964482634767	69.621	0.31676	69.599	69.462	69.779	-0.022087					15	11	2	0	0	0	0.21389	1	17550	17550		25.399	8.3128	1	76934			42700	7782	24639	24640	52145	52145					0.014140721169269455
SIIIVLQKKYF	11	Unmodified	_SIIIVLQKKYF_					0	0	0		ENST00000253233.5_1_12:123741599-123741686:+|nuORF	ENST00000253233.5_1_12:123741599-123741686:+|nuORF	ENST00000253233.5_1_12:123741599-123741686:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.77655029296875	3	451.283113	1350.82751	0.20422	9.2161E-05	-0.016383	-7.3932E-06	0.18784	8.4768E-05	451.28288472710574	57.98	0.52428	58.066	57.812	58.336	0.085621					28	18	2	0	0	0	0.33287	1	14062	14062		2.8433	0	1	207840			42701	8913	24640	24641	52146	52146					0.16612828118991274
SIIKLSNKY	9	Unmodified	_SIIKLSNKY_					0	0	0			REV__ENST00000455134.1_1_10:93426952-93427153:-|nuORF	REV__ENST00000455134.1_1_10:93426952-93427153:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3012084960938	2	533.318774	1064.623	0.30714	0.0001638	-0.49016	-0.00026141	-0.18302	-9.7607E-05	533.3183526448499	24.687	0.29348	24.631	24.486	24.78	-0.055931					11	9	2	0	0	0	0.31417	1	3840	3840		6.7232	2.3939	1	26131	+		42702	21155	24641	24642	52147	52147					0.09326889028466212
SIIKVFNI	8	Unmodified	_SIIKVFNI_					0	0	0			REV__L1ME1_dup8451|chr4:121325435-121326318:-|1.1964963221264515|0.0087895400446813|7.09|517.0|21|2|sense	REV__L1ME1_dup8451|chr4:121325435-121326318:-|1.1964963221264515|0.0087895400446813|7.09|517.0|21|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.23748779296875	2	467.292028	932.569503	0.070928	3.3144E-05	0.28146	0.00013152	0.35238	0.00016467	467.2919847928312	53.932	0.49898	53.988	53.766	54.265	0.056259					31	18	3	0	0	0	0.28235	1	12712	12712		23.148	0	1	286570	+		42703	22795	24642	24643	52148	52148					0.10052136316619453
SIIKVGDKQLA	11	Unmodified	_SIIKVGDKQLA_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.306396484375	2	586.355888	1170.69722	0.28457	0.00016686	-0.09721	-5.7E-05	0.18736	0.00010986	586.3559680407451	65.46	0.35867	65.46	65.218	65.577	0					16	12	2	0	0	0	0.32697	1	16357	16357		13.615	1.3742	1	121020	+		42704	17729	24643	24644	52149	52149					0.1187023212000895
SIIKVGDKQLA	11	Unmodified	_SIIKVGDKQLA_					0	0	0			REV__nc|ENSG00000172752|A8TX70-2|COL6A5	REV__nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3059692382812	2	586.355888	1170.69722	-0.21057	-0.00012347	0.17378	0.0001019	-0.036792	-2.1573E-05	586.3559543153984	65.345	0.27612	65.433	65.27	65.547	0.088882					16	9	2	0	0	0	0.3245	1	16308	16308		17.443	5.202	1	121770	+		42705	17729	24643	24644	52150	52150					0.1187023212000895
SIILWAHIVK	10	Unmodified	_SIILWAHIVK_					0	0	0			REV__nc|ENSG00000080815|P49768-3|PSEN1	REV__nc|ENSG00000080815|P49768-3|PSEN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.8399658203125	2	590.366059	1178.71756	0.68394	0.00040377	0.69796	0.00041205	1.3819	0.00081583	590.3664961421008	37.599	0.86479	37.599	37.342	38.206	0					40	30	2	0	0	0	0.31926	1	7739	7739		5.7319	2.4505	1	253310	+		42706	13894	24644	24645	52151	52151					0.1353544757043892
SIILWAHIVK	10	Unmodified	_SIILWAHIVK_					0	0	0			REV__nc|ENSG00000080815|P49768-3|PSEN1	REV__nc|ENSG00000080815|P49768-3|PSEN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.8403930664062	2	590.366059	1178.71756	0.38428	0.00022687	0.98233	0.00057993	1.3666	0.0008068	590.3664512275833	37.646	0.86988	37.744	37.28	38.15	0.097527					55	31	2	0	0	0	0.31926	1	7690	7690		5.7319	2.4505	1	224620	+		42707	13894	24644	24645	52152	52152					0.1353544757043892
SIIPPLFTV	9	Unmodified	_SIIPPLFTV_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000447375.1_1_X:153063080-153063885:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7998046875	2	493.799686	985.584819	0.34853	0.0001721	0.087232	4.3075E-05	0.43576	0.00021518	493.79964104597593	92.068	1.5545	92.068	91.737	93.291	0					286	118	4	0	0	0	0.0033114	3	24448	24448;24488;24527		99.799	31.718	1	4524400			42708	7210	24645	24646	52153;52154;52155	52153					0.09145003113815164
SIIPPLFTV	9	Unmodified	_SIIPPLFTV_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000447375.1_1_X:153063080-153063885:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.79974365234375	2	493.799686	985.584819	0.3873	0.00019125	0.078971	3.8996E-05	0.46627	0.00023024	493.7996109469821	91.925	1.6097	92.016	91.675	93.285	0.090675					304	120	6	0	0	0	0.0033114	3	24413	24413;24453;24494		99.799	31.718	1	6689200			42709	7210	24645	24646	52156;52157;52158	52156					0.09145003113815164
SIIPPLFTV	9	Unmodified	_SIIPPLFTV_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000447375.1_1_X:153063080-153063885:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.79986572265625	2	493.799686	985.584819	0.52189	0.00025771	-0.12392	-6.1192E-05	0.39797	0.00019652	493.799546588062	92.032	1.7359	92.033	91.664	93.4	0.00046539					291	133	5	0	0	0	0.0033114	3	24470	24429;24470;24507		99.799	31.718	1	6716200			42710	7210	24645	24646	52159;52160;52161	52160					0.09145003113815164
SIIQRLLEV	9	Unmodified	_SIIQRLLEV_					0	0	0		ENSG00000186298|ENST00000335007|PPP1CC;nc|ENSG00000186298|P36873-2|PPP1CC	ENSG00000186298|ENST00000335007|PPP1CC	ENSG00000186298|ENST00000335007|PPP1CC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8059692382812	2	535.832049	1069.64954	0.59938	0.00032117	-0.32015	-0.00017155	0.27924	0.00014962	535.8318286345261	72.62	0.37106	72.59	72.396	72.767	-0.029305					21	12	2	0	0	0	0.18479	1	18492	18492		17.443	3.0373	1	142850			42711	7608	24646	24647	52162	52162					0.11750577919792704
SIIWLQNSV	9	Unmodified	_SIIWLQNSV_					0	0	0			REV__ENST00000304385.7_1_4:153549084-153549300:-|nuORF	REV__ENST00000304385.7_1_4:153549084-153549300:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.282470703125	2	530.295299	1058.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.193	1	32.24	31.74	32.74	0.047604								0	0	0	0.20238	1	6101	6101		21.747	7.8406	1		+		42712	19842	24647	24648	52163	52163					0.049100294773325004
SIIWVDRNLKK	11	Unmodified	_SIIWVDRNLKK_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.94189453125	3	457.94175	1370.80342	0.18835	8.6252E-05	-0.15098	-6.914E-05	0.037366	1.7111E-05	457.94166561713104	37.963	1.0677	37.963	37.503	38.571	0					106	37	5	0	0	0	0.090382	2	7847	7847;7897		41.567	18.227	1	1737800			42713	1183	24648	24649	52164;52165	52164					0.13284987685278793
SIIWVDRNLKK	11	Unmodified	_SIIWVDRNLKK_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.9417419433594	3	457.94175	1370.80342	0.18788	8.6036E-05	-0.28975	-0.00013269	-0.10187	-4.6652E-05	457.9415950009401	37.834	1.0094	37.925	37.501	38.511	0.090881					95	36	4	0	0	0	0.098551	2	7826	7826;7873		40.317	15.162	1	1587500			42714	1183	24648	24649	52166;52167	52166					0.13284987685278793
SIIWVDRNLKK	11	Unmodified	_SIIWVDRNLKK_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2759704589844	3	457.94175	1370.80342	0.1338	6.1273E-05	-0.15053	-6.8933E-05	-0.016727	-7.6598E-06	457.9416351453144	37.764	1.1681	37.861	37.428	38.596	0.097527					110	42	5	0	0	0	0.015686	2	7837	7788;7837		63.164	17.561	1	1403700			42715	1183	24648	24649	52168;52169	52169					0.13284987685278793
SIKKTKHLR	9	Unmodified	_SIKKTKHLR_					0	0	0		ZBTB8A|p.L215Qfs*12|1|0.24|ENSG00000160062|chr1:32593555-32593556|-/AAGACCAAACATTTGAGAC|frameshift_variant;nc|ENSG00000160062|Q96BR9-2|ZBTB8A;ENSG00000160062|ENST00000373510|ZBTB8A	ZBTB8A|p.L215Qfs*12|1|0.24|ENSG00000160062|chr1:32593555-32593556|-/AAGACCAAACATTTGAGAC|frameshift_variant	ZBTB8A|p.L215Qfs*12|1|0.24|ENSG00000160062|chr1:32593555-32593556|-/AAGACCAAACATTTGAGAC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2696533203125	2	555.858932	1109.70331	0.38153	0.00021208	-0.95829	-0.00053268	-0.57677	-0.0003206	555.8584244190259	37.797	0.46003	37.888	37.693	38.153	0.090881					25	16	2	0	0	0	0.25988	1	7890	7890		3.9444	0	1	266450			42716	5434	24649	24650	52170	52170					0.15284795142156327
SIKKTKHLR	9	Unmodified	_SIKKTKHLR_					0	0	0		ZBTB8A|p.L215Qfs*12|1|0.24|ENSG00000160062|chr1:32593555-32593556|-/AAGACCAAACATTTGAGAC|frameshift_variant;nc|ENSG00000160062|Q96BR9-2|ZBTB8A;ENSG00000160062|ENST00000373510|ZBTB8A	ZBTB8A|p.L215Qfs*12|1|0.24|ENSG00000160062|chr1:32593555-32593556|-/AAGACCAAACATTTGAGAC|frameshift_variant	ZBTB8A|p.L215Qfs*12|1|0.24|ENSG00000160062|chr1:32593555-32593556|-/AAGACCAAACATTTGAGAC|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	555.858932	1109.70331	0.4708	0.0002617	-0.9466	-0.00052618	-0.4758	-0.00026448	555.8583268920187	37.862	0.41127	37.862	37.707	38.118	0	0.0071743	-9.7416E-05	NaN	3.9444	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291740			42717	5434	24649	24650							0.15284795142156327
SIKLSLHKIL	10	Unmodified	_SIKLSLHKIL_					0	0	0			REV__ABCD4|p.D406H|1|0.22|ENSG00000119688|chr14:74290402-74290402|C/G|missense_variant	REV__ABCD4|p.D406H|1|0.22|ENSG00000119688|chr14:74290402-74290402|C/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.3323974609375	2	576.379166	1150.74378	0.68808	0.0003966	-0.09521	-5.4877E-05	0.59287	0.00034172	576.379037862415	50.67	0.48764	50.67	50.461	50.949	0					39	17	3	0	0	0	0.31691	1	11721	11721		9.3831	3.6513	1	375510	+		42718	13067	24650	24651	52171	52171					0.174437167419228
SIKLSLHKIL	10	Unmodified	_SIKLSLHKIL_					0	0	0			REV__ABCD4|p.D406H|1|0.22|ENSG00000119688|chr14:74290402-74290402|C/G|missense_variant	REV__ABCD4|p.D406H|1|0.22|ENSG00000119688|chr14:74290402-74290402|C/G|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	576.379166	1150.74378	0.76522	0.00044106	-0.51559	-0.00029717	0.24963	0.00014388	576.3788712208889	50.677	0.48916	50.721	50.52	51.009	0.044891	0.0061082	-0.0001117	NaN	13.042	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440280	+		42719	13067	24650	24651							0.174437167419228
SIKLSLHKIL	10	Unmodified	_SIKLSLHKIL_					0	0	0			REV__ABCD4|p.D406H|1|0.22|ENSG00000119688|chr14:74290402-74290402|C/G|missense_variant	REV__ABCD4|p.D406H|1|0.22|ENSG00000119688|chr14:74290402-74290402|C/G|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	576.379166	1150.74378	0.73312	0.00042255	-0.48327	-0.00027855	0.24985	0.00014401	576.3789227844143	50.745	0.42402	50.755	50.541	50.965	0.0095634	0.039246	-7.4446E-05	NaN	13.042	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354930	+		42720	13067	24650	24651							0.174437167419228
SIKPIKFVF	9	Unmodified	_SIKPIKFVF_					0	0	0		MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|135|1|anti-sense	MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|135|1|anti-sense	MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|135|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3007202148438	2	539.836603	1077.65865	0.4824	0.00026041	0.25028	0.00013511	0.73268	0.00039553	539.8366593198336	73.178	0.42786	73.178	72.989	73.417	0					22	14	2	0	0	0	0.25706	1	18759	18759		6.7232	2.3939	1	178590			42721	12530	24651	24652	52172	52172					0.12292971276133358
SIKQKLLE	8	Unmodified	_SIKQKLLE_					0	0	0		nc|ENSG00000114120|Q96CQ1-4|SLC25A36;ENST00000514629.1_1_3:140692546-140695292:+|nuORF;nc|ENSG00000114120|Q96CQ1-3|SLC25A36;ENSG00000114120|ENST00000324194|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	nc|ENSG00000114120|Q96CQ1-4|SLC25A36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.27740478515625	2	479.800217	957.585882	0.50976	0.00024458	0.097818	4.6933E-05	0.60758	0.00029152	479.8002458544127	47.654	0.3252	47.702	47.51	47.836	0.047523					18	11	2	0	0	0	0.34167	1	10796	10796		7.2892	0	1	249310			42722	2546	24652	24653	52173	52173					0.10539217482710228
SIKQLREEHE	10	Unmodified	_SIKQLREEHE_					0	0	0			REV__ENSG00000186150|ENST00000334179|UBL4B	REV__ENSG00000186150|ENST00000334179|UBL4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.55810546875	3	423.557964	1267.65206	-0.38211	-0.00016184	-0.059613	-2.525E-05	-0.44172	-0.00018709	423.5578340718715	13.411	0.45988	13.411	13.254	13.714	0					38	15	4	0	0	0	0.31969	1	425	425		5.7834	0	1	183720	+		42723	18431	24653	24654	52174	52174					0.028943815868160527
SIKRKPLRVK	10	Unmodified	_SIKRKPLRVK_					0	0	0			REV__ENST00000490953.5_1_7:66456072-66459281:-|nuORF	REV__ENST00000490953.5_1_7:66456072-66459281:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2504577636719	3	408.946946	1223.81901	-0.36091	-0.00014759	-2.2463	-0.00091861	-2.6072	-0.0010662	408.94620275759326	14.929	0.27361	14.929	14.676	14.949	0					17	9	2	0	0	0	0.32137	1	833	833		1.7423	1.5064	1	46591	+		42724	21608	24654	24655	52175	52175					0.2160531899301077
SIKRSWPNIF	10	Unmodified	_SIKRSWPNIF_					0	0	0			REV__ENST00000491417.1_1_2:239170336-239171614:-|nuORF	REV__ENST00000491417.1_1_2:239170336-239171614:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.4918212890625	3	416.568024	1246.68224	0.22962	9.5653E-05	-0.20784	-8.6581E-05	0.021779	9.0724E-06	416.567944494567	47.884	0.37914	47.884	47.608	47.987	0					20	13	2	0	0	0	0.31515	1	10925	10925		4.7159	0	1	754800	+		42725	15561	24655	24656	52176	52176					0.06876785042641131
SIKRSWPNIF	10	Unmodified	_SIKRSWPNIF_					0	0	0			REV__ENST00000491417.1_1_2:239170336-239171614:-|nuORF	REV__ENST00000491417.1_1_2:239170336-239171614:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.49163818359375	3	416.568024	1246.68224	0.4115	0.00017142	-0.44309	-0.00018458	-0.031586	-1.3158E-05	416.90202633290176	47.797	0.33944	47.84	47.587	47.926	0.04332					20	12	2	0	0	0	0.31515	1	10872	10872		7.4771	0	1	1230400	+		42726	15561	24655	24656	52177	52177					0.06876785042641131
SIKTQMEL	8	Unmodified	_SIKTQMEL_					0	0	0		nc|ENSG00000266302|A2RUR9-2|CCDC144A;ENST00000470068.2_1_17:16635099-16667555:+|nuORF;ENST00000328495.9_1_17:16623938-16667555:+|nuORF;nc|ENSG00000266302|A2RUR9-3|CCDC144A;nc|ENSG00000154898|Q8IYA2|CCDC144CP;ENSG00000170160|ENST00000399273|CCDC144A;nc|ENSG00000266302|A2RUR9|CCDC144A	nc|ENSG00000266302|A2RUR9-2|CCDC144A	nc|ENSG00000266302|A2RUR9-2|CCDC144A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.27117919921875	2	475.254785	948.495018	0.30533	0.00014511	-0.16327	-7.7596E-05	0.14206	6.7513E-05	475.25445646576344	29.78	0.92115	29.792	29.56	30.481	0.012266					53	31	3	0	0	0	0.33661	1	5557	5557		19.257	3.4098	1	513490			42727	6427	24656	24657	52178	52178					0.018710054429107004
SIKYNEEKR	9	Unmodified	_SIKYNEEKR_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;APC|p.R1687Tfs*13|1|0.33|ENSG00000134982|chr5:112840647-112840648|-/A|frameshift_variant;APC|p.I1304Kfs*2|1|0.18|ENSG00000134982|chr5:112839500-112839506|GCAAATA/-|frameshift_variant	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.377197265625	2	583.811845	1165.60914	0.38384	0.00022409	0.39695	0.00023174	0.78078	0.00045583	583.8122477162676	38.028	0.32259	38.028	37.795	38.118	0					16	11	2	0	0	0	0.25323	1	7874	7874		6.2058	0	1	155990			42728	3835	24657	24658	52179	52179					0.03295611529370035
SILDEVIFK	9	Unmodified	_SILDEVIFK_					0	0	0		ENSG00000173226|ENST00000310864|IQCB1;ENST00000401788.2_1_6:27978946-27979378:+|nuORF;nc|ENSG00000173226|Q15051-3|IQCB1	ENSG00000173226|ENST00000310864|IQCB1	ENSG00000173226|ENST00000310864|IQCB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3048706054688	2	532.305332	1062.59611	0.56784	0.00030226	-1.9667	-0.0010469	-1.3989	-0.00074464	532.3041233854882	71.127	0.4051	71.102	70.833	71.238	-0.024872					19	14	2	0	0	0	0.14786	1	18072	18072		31.268	10.397	1	341540			42729	6704	24658	24659	52180	52180					0.0673178041729443
SILDEVIFK	9	Unmodified	_SILDEVIFK_					0	0	0		ENSG00000173226|ENST00000310864|IQCB1;ENST00000401788.2_1_6:27978946-27979378:+|nuORF;nc|ENSG00000173226|Q15051-3|IQCB1	ENSG00000173226|ENST00000310864|IQCB1	ENSG00000173226|ENST00000310864|IQCB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	532.305332	1062.59611	0.51808	0.00027578	-1.8541	-0.00098697	-1.3361	-0.0007112	532.3044731157268	70.979	0.43892	70.979	70.823	71.262	0	-0.068876	-0.00014497	NaN	31.268	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377510			42730	6704	24658	24659							0.0673178041729443
SILDEVIFK	9	Unmodified	_SILDEVIFK_					0	0	0		ENSG00000173226|ENST00000310864|IQCB1;ENST00000401788.2_1_6:27978946-27979378:+|nuORF;nc|ENSG00000173226|Q15051-3|IQCB1	ENSG00000173226|ENST00000310864|IQCB1	ENSG00000173226|ENST00000310864|IQCB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	532.305332	1062.59611	0.36039	0.00019184	-1.5814	-0.00084181	-1.221	-0.00064997	532.3044741014265	71.003	0.33856	71.063	70.904	71.243	0.060783	0.015032	0.00014536	NaN	31.268	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362630			42731	6704	24658	24659							0.0673178041729443
SILEDYANYK	10	Unmodified	_SILEDYANYK_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;MORF4L1|p.R243Pfs*6|1|0.07|ENSG00000185787|chr15:78893607-78893608|-/C|frameshift_variant;ENST00000525966.1_1_11:14695245-14695548:-|nuORF;ENST00000560710.1_1_15:79184565-79186592:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.2988891601562	2	608.298236	1214.58192	0.64787	0.0003941	0.35568	0.00021636	1.0036	0.00061046	608.2985027930547	51.117	0.88234	51.117	50.766	51.648	0					84	32	5	0	0	0	2.9523E-20	2	11866	11866;11918		205.91	145.84	1	5727400			42732	7557	24659	24660	52181;52182	52181					-0.016789168016885014
SILEDYANYK	10	Unmodified	_SILEDYANYK_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;MORF4L1|p.R243Pfs*6|1|0.07|ENSG00000185787|chr15:78893607-78893608|-/C|frameshift_variant;ENST00000525966.1_1_11:14695245-14695548:-|nuORF;ENST00000560710.1_1_15:79184565-79186592:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.2989501953125	2	608.298236	1214.58192	0.53835	0.00032748	0.55585	0.00033812	1.0942	0.0006656	608.2986195933931	51.08	0.76705	51.126	50.794	51.561	0.046574					73	28	4	0	0	0	2.9523E-20	1	11860	11860		205.91	145.84	1	5323400			42733	7557	24659	24660	52183	52183					-0.016789168016885014
SILEKGFIAK	10	Unmodified	_SILEKGFIAK_					0	0	0		NEK1|p.I1230Ffs*16|1|0.31|ENSG00000137601|chr4:169400300-169400300|T/-|frameshift_variant;ENST00000509912.5_1_4:170476851-170520268:-|nuORF;nc|ENSG00000137601|Q96PY6-5|NEK1;nc|ENSG00000137601|Q96PY6-4|NEK1;nc|ENSG00000137601|Q96PY6-2|NEK1;nc|ENSG00000137601|Q96PY6-6|NEK1;nc|ENSG00000137601|Q96PY6|NEK1;ENSG00000137601|ENST00000507142|NEK1	NEK1|p.I1230Ffs*16|1|0.31|ENSG00000137601|chr4:169400300-169400300|T/-|frameshift_variant	NEK1|p.I1230Ffs*16|1|0.31|ENSG00000137601|chr4:169400300-169400300|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3038330078125	2	553.334424	1104.6543	-0.0016701	-9.2415E-07	-0.47515	-0.00026292	-0.47682	-0.00026384	553.3344289463548	39.462	0.42767	39.462	39.268	39.695	0					33	15	3	0	0	0	0.2541	1	8318	8318		30.703	0	1	422350			42734	13030	24660	24661	52184	52184					0.10615462062582992
SILELEKER	9	Unmodified	_SILELEKER_					0	0	0		ENST00000486873.2_1_2:169699570-169711975:+|nuORF;nc|ENSG00000163072|Q8IVI9-3|NOSTRIN;nc|ENSG00000163072|Q8IVI9-2|NOSTRIN;ENSG00000163072|ENST00000317647|NOSTRIN;nc|ENSG00000163072|Q8IVI9-4|NOSTRIN;NOSTRIN|p.Q221K|1|0.26|ENSG00000163072|chr2:168851114-168851114|C/A|missense_variant	ENST00000486873.2_1_2:169699570-169711975:+|nuORF	ENST00000486873.2_1_2:169699570-169711975:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.8170776367188	2	558.816596	1115.61864	0.20852	0.00011652	-0.21591	-0.00012066	-0.0073956	-4.1328E-06	558.816471244775	19.802	0.71471	19.802	19.493	20.207	0					81	26	4	0	0	0	0.31763	1	2268	2268		6.2058	0	1	668480			42735	5645	24661	24662	52185	52185					0.06545379814906482
SILELKSVPF	10	Unmodified	_SILELKSVPF_					0	0	0			REV__ENSG00000173258|ENST00000309235|ZNF483	REV__ENSG00000173258|ENST00000309235|ZNF483	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.3078002929688	2	566.834257	1131.65396	0.36396	0.0002063	1.1387	0.00064547	1.5027	0.00085177	566.8349053784978	58.621	0.32725	58.621	58.439	58.767	0					17	10	2	0	0	0	0.318	1	14198	14198		7.2892	0	1	178790	+		42736	17774	24662	24663	52186	52186					0.09340042342705601
SILFFIMLL	9	Unmodified	_SILFFIMLL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3413696289062	2	548.827389	1095.64023	0.34876	0.00019141	0.61611	0.00033814	0.96487	0.00052954	548.8277786186112	25.188	0.45723	25.188	24.902	25.359	0					24	15	2	0	0	0	0.25938	1	4012	4012		4.3292	0	1	90099			42737	3560	24663	24664	52187	52187					0.0962309330991502
SILFFIMLL	9	Unmodified	_SILFFIMLL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.827389	1095.64023	0.30857	0.00016935	0.53497	0.00029361	0.84354	0.00046296	548.8278214230353	25.213	0.47681	25.157	24.888	25.365	-0.055931	-0.019697	-0.00010511	NaN	4.3292	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63981			42738	3560	24663	24664							0.0962309330991502
SILFFIMLL	9	Unmodified	_SILFFIMLL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	548.827389	1095.64023	0.05305	2.9115E-05	0.83014	0.0004556	0.88319	0.00048472	548.8279978970045	25.217	0.55067	25.185	24.796	25.347	-0.03141	0.0084978	0.00021889	NaN	4.3292	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40363			42739	3560	24663	24664							0.0962309330991502
SILFFVWISD	10	Unmodified	_SILFFVWISD_					0	0	0			REV__ENST00000507925.1_1_4:25395483-25396777:+|nuORF	REV__ENST00000507925.1_1_4:25395483-25396777:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.208740234375	3	409.55338	1225.63831	0.046511	1.9049E-05	-0.01765	-7.2288E-06	0.028861	1.182E-05	409.5531899936306	32.903	0.63892	32.958	32.73	33.369	0.055309					42	22	3	0	0	0	0.38745	1	6373	6373		5.7834	0.73591	1	168570	+		42740	21765	24664	24665	52188	52188					0.034517558256538905
SILFFVWISD	10	Unmodified	_SILFFVWISD_					0	0	0			REV__ENST00000507925.1_1_4:25395483-25396777:+|nuORF	REV__ENST00000507925.1_1_4:25395483-25396777:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2437438964844	3	409.55338	1225.63831	0.035288	1.4452E-05	0.20751	8.4987E-05	0.2428	9.9439E-05	409.88787827684064	32.945	0.85344	32.999	32.63	33.483	0.054375					46	30	3	0	0	0	0.3179	1	6424	6424		5.7834	0	1	176940	+		42741	21765	24664	24665	52189	52189					0.034517558256538905
SILGALCLFS	10	Unmodified	_SILGALCLFS_					0	0	0		nc|ENSG00000157703|Q8N434-2|SVOPL;ENSG00000157703|ENST00000674285|SVOPL	nc|ENSG00000157703|Q8N434-2|SVOPL	nc|ENSG00000157703|Q8N434-2|SVOPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2813720703125	2	512.280803	1022.54705	0.18436	9.4446E-05	-0.45139	-0.00023124	-0.26703	-0.00013679	512.2806145388447	76.366	2.1961	76.419	76.189	78.385	0.053413					104	78	2	0	0	0	0.2811	1	20105	20105		22.736	6.8891	1	1054000			42742	5322	24665	24666	52190	52190					0.036681688566886805
SILGPGNIKK	10	Unmodified	_SILGPGNIKK_					0	0	0		ENSG00000138592|ENST00000307179|USP8	ENSG00000138592|ENST00000307179|USP8	ENSG00000138592|ENST00000307179|USP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8916015625	2	513.818941	1025.62333	-0.076422	-3.9267E-05	0.32891	0.000169	0.25248	0.00012973	513.8197818580453	28.41	0.444	28.411	28.242	28.686	0.0004673					27	15	2	0	0	0	0.31889	1	4928	4928		6.2058	0.97511	1	104430			42743	4158	24666	24667	52191	52191					0.11154308748336916
SILGTPLSK	9	Unmodified	_SILGTPLSK_					0	0	0		ENSG00000166912|ENST00000435680|MTMR10;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENSG00000166912|ENST00000435680|MTMR10;ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENSG00000166912|ENST00000435680|MTMR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2789611816406	2	458.279118	914.543683	0.067203	3.0798E-05	-0.67482	-0.00030926	-0.60762	-0.00027846	458.27893717942925	42.978	1.0293	42.978	42.652	43.681	0					67	37	3	0	0	0	0.011693	2	9425	9380;9425		76.825	24.556	1	1475800			42744	6130;11980	24667	24668	52192;52193	52193					0.08299242074326685
SILGTPLSK	9	Unmodified	_SILGTPLSK_					0	0	0		ENSG00000166912|ENST00000435680|MTMR10;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENSG00000166912|ENST00000435680|MTMR10;ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENSG00000166912|ENST00000435680|MTMR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.2790832519531	2	458.279118	914.543683	0.12519	5.7373E-05	-1.4551	-0.00066683	-1.3299	-0.00060946	458.2783944883676	42.852	1.1267	42.938	42.565	43.691	0.085197					88	40	3	0	0	0	0.07944	1	9329	9329		41.956	3.9816	1	1885900			42745	6130;11980	24667	24668	52194	52194					0.08299242074326685
SILGTPLSK	9	Unmodified	_SILGTPLSK_					0	0	0		ENSG00000166912|ENST00000435680|MTMR10;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENSG00000166912|ENST00000435680|MTMR10;ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENSG00000166912|ENST00000435680|MTMR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.27880859375	2	458.279118	914.543683	-0.015743	-7.2146E-06	-1.3309	-0.00060992	-1.3466	-0.00061714	458.2784566783274	42.797	1.029	42.888	42.554	43.583	0.091362					86	37	3	0	0	0	0.0098873	2	9310	9310;9375		79.596	29.663	1	1687800			42746	6130;11980	24667	24668	52195;52196	52195					0.08299242074326685
SILIMVLVDFF	11	Oxidation (M)	_SILIM(Oxidation (M))VLVDFF_		SILIM(1)VLVDFF		SILIM(41)VLVDFF	0	0	1		ENSG00000004939|ENST00000262418|SLC4A1;nc|ENSG00000004939|P02730-2|SLC4A1	ENSG00000004939|ENST00000262418|SLC4A1	ENSG00000004939|ENST00000262418|SLC4A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.24530029296875	3	438.245559	1311.71485	0.42548	0.00018647	-1.4206	-0.00062257	-0.99511	-0.0004361	438.2451871011441	50.823	0.98948	50.823	50.518	51.508	0					87	36	4	0	0	0	0.091141	1	11818	11818		41.347	16.39	1	2064100			42747	320	24668	24669	52197	52197		28			0.07145811330610741
SILKESKYK	9	Unmodified	_SILKESKYK_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.248291015625	2	548.324057	1094.63356	0.44699	0.00024509	-0.18347	-0.0001006	0.26351	0.00014449	548.3238572185231	17.582	0.31999	17.522	17.33	17.65	-0.060429					19	10	2	0	0	0	0.25346	1	1684	1684		10.8	5.0677	1	49588			42748	1023	24669	24670	52198	52198					0.09002871682878322
SILKKESKY	9	Unmodified	_SILKKESKY_					0	0	0		ENSG00000110318|ENST00000263468|CEP126	ENSG00000110318|ENST00000263468|CEP126	ENSG00000110318|ENST00000263468|CEP126	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2483520507812	2	548.324057	1094.63356	0.31539	0.00017293	0.56798	0.00031144	0.88337	0.00048437	548.3244804061522	17.649	0.30762	17.531	17.355	17.663	-0.11739					21	10	3	0	0	0	0.25612	1	1707	1707		8.1555	0	1	48384			42749	2302	24670	24671	52199	52199					0.09002871682901059
SILKQMPTAP	10	Unmodified	_SILKQMPTAP_					0	0	0			REV__ENSG00000168676|ENST00000304372|KCTD19	REV__ENSG00000168676|ENST00000304372|KCTD19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3160400390625	2	543.30481	1084.59507	1.152	0.00062589	1.0752	0.00058416	2.2272	0.0012101	543.3050832916939	33.874	0.46822	33.94	33.624	34.092	0.06636					28	16	2	0	0	0	0.31143	1	6530	6530		12.241	2.1667	1	232390	+		42750	17472	24671	24672	52200	52200					0.05615242776730156
SILKTPLPKKI	11	Unmodified	_SILKTPLPKKI_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;U2SURP|p.G639Efs*20|1|0.04|ENSG00000163714|chr3:143034949-143034950|-/AAATTATTAAAAATCAAAAACTA|frameshift_variant	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.93267822265625	3	413.279591	1236.81694	0.16364	6.7628E-05	-0.37917	-0.0001567	-0.21553	-8.9073E-05	413.27942754775023	37.983	0.69709	38.081	37.74	38.437	0.097527					55	24	3	0	0	0	0.3302	1	7928	7928		10.016	4.493	1	363170			42751	12800	24672	24673	52201	52201					0.20800845464577833
SILKTPLPKKI	11	Unmodified	_SILKTPLPKKI_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;U2SURP|p.G639Efs*20|1|0.04|ENSG00000163714|chr3:143034949-143034950|-/AAATTATTAAAAATCAAAAACTA|frameshift_variant	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	413.279591	1236.81694	0.0020684	8.5482E-07	0.066776	2.7597E-05	0.068844	2.8452E-05	413.27951779430634	38.074	0.55209	38.074	37.767	38.32	0	-0.0094514	0.00044592	NaN	10.016	48	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365520			42752	12800	24672	24673							0.20800845464577833
SILKTPLPKKI	11	Unmodified	_SILKTPLPKKI_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;U2SURP|p.G639Efs*20|1|0.04|ENSG00000163714|chr3:143034949-143034950|-/AAATTATTAAAAATCAAAAACTA|frameshift_variant	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	413.279591	1236.81694	0.31879	0.00013175	-0.46315	-0.00019141	-0.14437	-5.9663E-05	413.279322674976	38.004	0.60305	38.095	37.796	38.399	0.090881	0.01163	-0.00021111	NaN	10.016	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400660			42753	12800	24672	24673							0.20800845464577833
SILLIVFSGLA	11	Unmodified	_SILLIVFSGLA_					0	0	0			REV__ENSG00000174982|ENST00000641692|OR4S2	REV__ENSG00000174982|ENST00000641692|OR4S2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2794189453125	2	566.85245	1131.69035	0.26679	0.00015123	-0.081396	-4.614E-05	0.1854	0.00010509	566.8524848158985	63.023	0.5672	63.023	62.689	63.256	0					44	20	3	0	0	0	0.26148	1	15578	15578		36.506	5.8028	1	379240	+		42754	17865	24673	24674	52202	52202					0.12976919239440576
SILMWSLLFYS	11	Unmodified	_SILMWSLLFYS_					0	0	0			REV__ENST00000254950.12_1_16:69358215-69358500:+|nuORF	REV__ENST00000254950.12_1_16:69358215-69358500:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7922058105469	3	453.905425	1358.69445	0.24626	0.00011178	-1.0774	-0.00048904	-0.83115	-0.00037726	453.9049295796784	62.755	0.52207	62.85	62.544	63.066	0.095726					29	18	2	0	0	0	0.32774	1	15467	15467		13.519	4.7669	1	383950	+		42755	19547	24674	24675	52203	52203					0.029446406708302675
SILMWSLLFYS	11	Unmodified	_SILMWSLLFYS_					0	0	0			REV__ENST00000254950.12_1_16:69358215-69358500:+|nuORF	REV__ENST00000254950.12_1_16:69358215-69358500:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.7922668457031	3	453.905425	1358.69445	0.12821	5.8197E-05	-1.5839	-0.00071896	-1.4557	-0.00066077	454.2395755906949	62.795	0.58984	62.786	62.514	63.104	-0.0085564					67	21	5	0	0	0	0.32774	1	15468	15468		13.519	0.66272	1	367010	+		42756	19547	24674	24675	52204	52204					0.029446406708302675
SILNNPIVK	9	Unmodified	_SILNNPIVK_					0	0	0		nc|ENSG00000162664|Q5BKZ1-3|ZNF326;ENST00000394583.7_1_1:90470639-90493257:+|nuORF;ZNF326|p.I535Lfs*5|1|0.04|ENSG00000162664|chr1:90027553-90027554|-/TT|frameshift_variant;ENSG00000162664|ENST00000340281|ZNF326	nc|ENSG00000162664|Q5BKZ1-3|ZNF326	nc|ENSG00000162664|Q5BKZ1-3|ZNF326	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2898254394531	2	499.305667	996.596781	0.65985	0.00032947	-0.77372	-0.00038632	-0.11386	-5.6852E-05	499.3057421309981	47.286	0.58812	47.286	46.961	47.549	0					49	20	4	0	0	0	0.020233	1	10760	10760		63.961	29.559	1	1175100			42757	5597	24675	24676	52205	52205					0.09834619856997051
SILNNPIVK	9	Unmodified	_SILNNPIVK_					0	0	0		nc|ENSG00000162664|Q5BKZ1-3|ZNF326;ENST00000394583.7_1_1:90470639-90493257:+|nuORF;ZNF326|p.I535Lfs*5|1|0.04|ENSG00000162664|chr1:90027553-90027554|-/TT|frameshift_variant;ENSG00000162664|ENST00000340281|ZNF326	nc|ENSG00000162664|Q5BKZ1-3|ZNF326	nc|ENSG00000162664|Q5BKZ1-3|ZNF326	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2898864746094	2	499.305667	996.596781	0.3628	0.00018115	0.45492	0.00022714	0.81772	0.00040829	499.30622521441165	47.244	0.90524	47.297	46.872	47.777	0.052574					69	33	3	0	0	0	0.020233	2	10742	10742;10791		63.961	21.866	1	1265800			42758	5597	24675	24676	52206;52207	52206					0.09834619856997051
SILNNPIVK	9	Unmodified	_SILNNPIVK_					0	0	0		nc|ENSG00000162664|Q5BKZ1-3|ZNF326;ENST00000394583.7_1_1:90470639-90493257:+|nuORF;ZNF326|p.I535Lfs*5|1|0.04|ENSG00000162664|chr1:90027553-90027554|-/TT|frameshift_variant;ENSG00000162664|ENST00000340281|ZNF326	nc|ENSG00000162664|Q5BKZ1-3|ZNF326	nc|ENSG00000162664|Q5BKZ1-3|ZNF326	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.28985595703125	2	499.305667	996.596781	0.95488	0.00047678	-0.47698	-0.00023816	0.4779	0.00023862	499.3058777340947	47.26	0.79678	47.314	46.851	47.648	0.054375					56	28	3	0	0	0	0.020233	2	10734	10734;10782		63.961	29.559	1	1183200			42759	5597	24675	24676	52208;52209	52208					0.09834619856997051
SILPAIFQK	9	Unmodified	_SILPAIFQK_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.811279296875	2	508.810585	1015.60662	0.38489	0.00019584	-0.2429	-0.00012359	0.14199	7.2247E-05	508.8109117290638	63.365	1.8503	63.365	62.689	64.539	0					251	67	6	0	0	0	1.3869E-07	4	15720	15625;15671;15720;15769		174.73	120.89	1	44379000			42760	6083	24676	24677	52210;52211;52212;52213	52212					0.09943807862362064
SILPAIFQK	9	Unmodified	_SILPAIFQK_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8112487792969	2	508.810585	1015.60662	0.37725	0.00019195	-0.29091	-0.00014802	0.086344	4.3933E-05	508.8108843306624	63.268	1.9475	63.364	62.663	64.611	0.095722					254	70	6	0	0	0	4.1361E-11	4	15642	15583;15591;15642;15692		189.78	123.32	1	44099000			42761	6083	24676	24677	52214;52215;52216;52217	52216					0.09943807862362064
SILPAIFQK	9	Unmodified	_SILPAIFQK_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.81109619140625	2	508.810585	1015.60662	0.37276	0.00018966	-0.2928	-0.00014898	0.079957	4.0683E-05	508.8108635392174	63.394	2.0483	63.386	62.675	64.723	-0.0085526					263	74	6	0	0	0	4.1361E-11	5	15664	15610;15614;15664;15706;15755		189.78	121.7	1	41014000			42762	6083	24676	24677	52218;52219;52220;52221;52222	52220					0.09943807862362064
SILPKKHVDFV	11	Unmodified	_SILPKKHVDFV_					0	0	0		nc|ENSG00000165304|Q14680-3|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK	nc|ENSG00000165304|Q14680-3|MELK	nc|ENSG00000165304|Q14680-3|MELK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8814697265625	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.198	1	95.196	94.696	95.696	-0.0020142								0	0	0	0.36517	1	25425	25425		4.897	0.95262	1				42763	5948	24677	24678	52223	52223					0.11490511390979918
SILPKKHVDFV	11	Unmodified	_SILPKKHVDFV_					0	0	0		nc|ENSG00000165304|Q14680-3|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK	nc|ENSG00000165304|Q14680-3|MELK	nc|ENSG00000165304|Q14680-3|MELK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8829956054688	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.336	1	95.333	94.833	95.833	-0.0033417								0	0	0	0.36517	1	25464	25464		4.897	1.9018	1				42764	5948	24677	24678	52224	52224					0.11490511390979918
SILPKKHVDFV	11	Unmodified	_SILPKKHVDFV_					0	0	0		nc|ENSG00000165304|Q14680-3|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK	nc|ENSG00000165304|Q14680-3|MELK	nc|ENSG00000165304|Q14680-3|MELK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8822631835938	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.096	1	96.092	95.592	96.592	-0.0038147								0	0	0	0.36517	1	25691	25691		4.897	1.6157	1				42765	5948	24677	24678	52225	52225					0.11490511390979918
SILPLPYMIQ	10	Unmodified	_SILPLPYMIQ_					0	0	0		ENSG00000178597|ENST00000319098|PSAPL1	ENSG00000178597|ENST00000319098|PSAPL1	ENSG00000178597|ENST00000319098|PSAPL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.3272705078125	2	587.83066	1173.64677	0.306	0.00017988	0.31182	0.0001833	0.61783	0.00036318	588.3313069696062	59.209	0.99647	59.209	58.624	59.621	0					56	34	2	0	0	0	0.31358	1	14507	14507		9.3831	0	1	1428300			42766	7064	24678	24679	52226	52226					0.06688986470635427
SILQHLLLV	9	Unmodified	_SILQHLLLV_					0	0	0		nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1;DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	nc|ENSG00000131504|O60610-2|DIAPH1	nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3178100585938	2	518.331685	1034.64882	0.61881	0.00032075	-0.92379	-0.00047883	-0.30498	-0.00015808	518.3310528704606	77.289	0.26583	77.289	77.204	77.47	0					12	9	2	0	0	0	0.23767	1	19975	19975		18.146	0	1	190700			42767	3573	24679	24680	52227	52227					0.1328778327076634
SILRCALDL	9	Unmodified	_SILRCALDL_					0	0	0			REV__ENSG00000137502|ENST00000527633|RAB30	REV__ENSG00000137502|ENST00000527633|RAB30	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2744140625	2	502.283877	1002.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.046	1	41.143	40.643	41.643	0.096626								0	0	0	0.19804	1	8803	8803		23.148	0	1		+		42768	15867	24680	24681	52228	52228					0.0520268708819458
SILRLPETE	9	Unmodified	_SILRLPETE_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3142700195312	2	529.298039	1056.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.91	1	119.93	119.43	120.43	0.027756								0	0	0	0.26513	1	30996	30996		1.4819	0.79152	1				42769	4168	24681	24682	52229	52229					0.0554970826913177
SILSIVHVK	9	Unmodified	_SILSIVHVK_					0	0	0		nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9	nc|ENSG00000008294|O60271-4|SPAG9	nc|ENSG00000008294|O60271-4|SPAG9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3158264160156	2	498.316035	994.617516	0.70883	0.00035322	0.51806	0.00025816	1.2269	0.00061138	498.3157913825333	46.956	0.42732	46.956	46.76	47.187	0					23	14	2	0	0	0	0.020233	1	10638	10638		63.961	22.121	1	812050			42770	392	24682	24683	52230	52230					0.11999210236672297
SILSIVHVK	9	Unmodified	_SILSIVHVK_					0	0	0		nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9	nc|ENSG00000008294|O60271-4|SPAG9	nc|ENSG00000008294|O60271-4|SPAG9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.31610107421875	2	498.316035	994.617516	0.76834	0.00038288	1.0336	0.00051508	1.802	0.00089795	498.3159971510666	46.912	0.75977	46.966	46.574	47.334	0.054375					38	26	3	0	0	0	0.01909	1	10612	10612		65.474	19.774	1	982310			42771	392	24682	24683	52231	52231					0.11999210236672297
SILSKKLVE	9	Unmodified	_SILSKKLVE_					0	0	0		ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP	ENSG00000025708|ENST00000252029|TYMP	ENSG00000025708|ENST00000252029|TYMP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8105773925781	2	508.82115	1015.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.027	1	59.013	58.513	59.513	-0.014267								0	0	0	0.19534	1	14341	14341		24.021	0	1				42772	533	24683	24684	52232	52232					0.120557731712438
SILSKLQSV	9	Unmodified	_SILSKLQSV_					0	0	0		ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2870788574219	2	487.797675	973.580796	0.26996	0.00013169	-1.8651	-0.00090977	-1.5951	-0.00077808	487.7967639286051	38.168	0.56091	38.266	37.981	38.542	0.097527					46	19	4	0	0	0	0.28674	1	7863	7863		10.824	0.75	1	418470			42773	8450	24684	24685	52233	52233					0.09294913620090028
SILTALLSEF	10	Unmodified	_SILTALLSEF_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8262939453125	2	547.310615	1092.60668	0.1822	9.9722E-05	0.48139	0.00026347	0.6636	0.00036319	547.3105986367647	61.895	0.65401	61.992	61.729	62.383	0.096985					37	23	2	0	0	0	0.3156	1	15328	15328		10.824	2.2306	1	302210			42774	3681	24685	24686	52234	52234					0.06407763071729278
SILTALLSEF	10	Unmodified	_SILTALLSEF_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	547.310615	1092.60668	0.35958	0.0001968	0.44533	0.00024374	0.80491	0.00044054	547.3106643114198	61.946	0.43539	61.946	61.703	62.138	0	-0.0065862	9.4945E-05	NaN	3.5965	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343400			42775	3681	24685	24686							0.06407763071729278
SILTETLHRF	10	Unmodified	_SILTETLHRF_					0	0	0		nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR	nc|ENSG00000001626|P13569-2|CFTR	nc|ENSG00000001626|P13569-2|CFTR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.838134765625	2	608.837862	1215.66117	0.18709	0.00011391	-0.29072	-0.000177	-0.10364	-6.3098E-05	608.8375189610648	105.7	1.0637	105.7	105.22	106.28	-0.0027847					373	153	3	0	0	0	0.39935	1	27980	27980		3.5965	0.60125	1	963300			42776	289	24686	24687	52235	52235					0.06196774943123273
SILTETLHRF	10	Unmodified	_SILTETLHRF_					0	0	0		nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR	nc|ENSG00000001626|P13569-2|CFTR	nc|ENSG00000001626|P13569-2|CFTR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.837646484375	2	608.837862	1215.66117	0.2454	0.00014941	-0.2651	-0.0001614	-0.019691	-1.1989E-05	608.8375255550451	105.8	0.92616	105.8	105.37	106.29	0.0031738					349	133	3	0	0	0	0.39935	2	28005	28005;28059		3.5965	0.31518	1	1060400			42777	289	24686	24687	52236;52237	52236					0.06196774943123273
SILYEKPK	8	Unmodified	_SILYEKPK_					0	0	0			REV__ENST00000490493.1_1_7:105207903-105231821:-|nuORF	REV__ENST00000490493.1_1_7:105207903-105231821:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.813232421875	2	489.286943	976.559333	0.71	0.0003474	0.27789	0.00013597	0.98789	0.00048336	489.2870361499645	48.013	0.524	48.06	47.866	48.39	0.047523					39	19	3	0	0	0	0.29969	1	10926	10926		34.402	1.616	1	1149600	+		42778	18352	24687	24688	52238	52238					0.07011528591374372
SIMDPNQNVK	10	Oxidation (M)	_SIM(Oxidation (M))DPNQNVK_		SIM(1)DPNQNVK		SIM(83)DPNQNVK	0	0	1		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.282470703125	2	581.282063	1160.54957	0.2461	0.00014305	0.058236	3.3852E-05	0.30434	0.0001769	581.2820445211764	21.885	0.81935	21.885	21.459	22.278	0					81	29	3	0	0	0	0.0094051	2	2993	2949;2993		83.278	60.62	1	465240			42779	2691	24688	24689	52239;52240	52240		334			-0.024280274763214038
SIMDPNQNVK	10	Oxidation (M)	_SIM(Oxidation (M))DPNQNVK_		SIM(1)DPNQNVK		SIM(110)DPNQNVK	0	0	1		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.2822265625	2	581.282063	1160.54957	0.31267	0.00018175	-0.07604	-4.4201E-05	0.23663	0.00013755	581.2819969779508	21.964	1.1387	21.864	21.417	22.556	-0.10034					97	41	4	0	0	0	0.0022715	2	3018	2973;3018		107.56	69.388	1	529730			42780	2691	24688	24689	52241;52242	52242		334			-0.024280274763214038
SIMDPNQNVK	10	Oxidation (M)	_SIM(Oxidation (M))DPNQNVK_		SIM(1)DPNQNVK		SIM(110)DPNQNVK	0	0	1		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.2821655273438	2	581.282063	1160.54957	0.20391	0.00011853	0.19371	0.0001126	0.39762	0.00023113	581.2820877568843	21.981	0.94	21.931	21.435	22.375	-0.049377					83	33	3	0	0	0	0.0022715	4	2952	2906;2952;2995;3043		107.56	74.778	1	495320			42781	2691	24688	24689	52243;52244;52245;52246	52244		334			-0.024280274763214038
SIMEGLAL	8	Unmodified	_SIMEGLAL_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.18902587890625	2	417.225497	832.43644	0.26111	0.00010894	-0.57014	-0.00023788	-0.30904	-0.00012894	417.22509991861153	44.055	0.3983	44.133	44.048	44.446	0.077515					16	14	2	0	0	0	0.34218	1	9807	9807		9.3474	0	1	272720			42782	8145	24689	24690	52247	52247					0.013519488684323733
SIMEGLGSPV	10	Unmodified	_SIMEGLGSPV_					0	0	0			REV__nc|ENSG00000089006|Q9Y5X3-2|SNX5	REV__nc|ENSG00000089006|Q9Y5X3-2|SNX5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7850036621094	2	495.252243	988.489932	0.53895	0.00026692	1.1965	0.00059256	1.7354	0.00085947	495.25243893384135	45.579	0.58192	45.644	45.461	46.043	0.065048					25	20	2	0	0	0	0.28434	1	10171	10171		19.257	8.4331	1	235140	+		42783	22903	24690	24691	52248	52248					-0.004772984196847574
SIMRKKRPHI	10	Unmodified	_SIMRKKRPHI_					0	0	0		ENST00000528672.1_1_11:35223289-35229672:+|nuORF	ENST00000528672.1_1_11:35223289-35229672:+|nuORF	ENST00000528672.1_1_11:35223289-35229672:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.5716857910156	3	422.592286	1264.75503	-0.32312	-0.00013655	0.83196	0.00035158	0.50884	0.00021503	422.59250559982155	45.997	0.28309	46.057	45.926	46.209	0.059837					15	9	2	0	0	0	0.32143	1	10328	10328		1.5923	1.1378	1	224970			42784	11586	24691	24692	52249	52249					0.13324215564421138
SIMRKKRPHI	10	Unmodified	_SIMRKKRPHI_					0	0	0		ENST00000528672.1_1_11:35223289-35229672:+|nuORF	ENST00000528672.1_1_11:35223289-35229672:+|nuORF	ENST00000528672.1_1_11:35223289-35229672:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5714416503906	3	422.592286	1264.75503	0.030571	1.2919E-05	-1.1806	-0.00049892	-1.1501	-0.00048601	422.5920842158672	46.192	0.63389	46.257	45.951	46.585	0.065048					34	22	3	0	0	0	0.32068	1	10370	10370		1.7423	0	1	359730			42785	11586	24691	24692	52250	52250					0.13324215564421138
SIMSSHVMK	9	2 Oxidation (M)	_SIM(Oxidation (M))SSHVM(Oxidation (M))K_		SIM(1)SSHVM(1)K		SIM(73)SSHVM(73)K	0	0	2		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2490844726562	2	526.249177	1050.4838	0.10388	5.4667E-05	-0.4616	-0.00024292	-0.35772	-0.00018825	526.2490629398455	13.387	0.58964	13.287	13.129	13.718	-0.099291					47	20	3	0	0	0	0.014206	1	425	425		72.968	47.977	1	443860			42786	5388	24692	24693	52251	52251		651;652			-0.03942139922833121
SIMSSHVMK	9	2 Oxidation (M)	_SIM(Oxidation (M))SSHVM(Oxidation (M))K_		SIM(1)SSHVM(1)K		SIM(58)SSHVM(58)K	0	0	2		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.2490844726562	2	526.249177	1050.4838	0.11529	6.0671E-05	-0.62227	-0.00032747	-0.50698	-0.0002668	526.2489373248858	13.385	0.63899	13.317	13.134	13.773	-0.067496					53	22	3	0	0	0	0.037019	1	417	417		57.722	38.465	1	429850			42787	5388	24692	24693	52252	52252		651;652			-0.03942139922833121
SINAQRNAL	9	Unmodified	_SINAQRNAL_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12|p.I1368Yfs*4|1|0.34|ENSG00000153827|chr2:229791954-229791955|-/A|frameshift_variant;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7727355957031	2	493.772522	985.530492	0.29418	0.00014526	0.10778	5.3221E-05	0.40197	0.00019848	493.77246915745184	25.321	0.70521	25.321	25.035	25.741	0					72	23	4	0	0	0	0.0032746	2	3992	3992;4041		100.09	33.634	1	871480			42788	5089	24693	24694	52253;52254	52253					0.03714804014953188
SINAQRNAL	9	Unmodified	_SINAQRNAL_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12|p.I1368Yfs*4|1|0.34|ENSG00000153827|chr2:229791954-229791955|-/A|frameshift_variant;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7725830078125	2	493.772522	985.530492	0.14468	7.1438E-05	0.23318	0.00011514	0.37785	0.00018657	493.77254282861765	25.374	0.69133	25.318	25.074	25.766	-0.055931					64	23	4	0	0	0	0.0028542	3	4047	3999;4047;4097		103.42	30.451	1	996450			42789	5089	24693	24694	52255;52256;52257	52256					0.03714804014953188
SINAQRNAL	9	Unmodified	_SINAQRNAL_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12|p.I1368Yfs*4|1|0.34|ENSG00000153827|chr2:229791954-229791955|-/A|frameshift_variant;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.77288818359375	2	493.772522	985.530492	-0.023428	-1.1568E-05	0.32324	0.00015961	0.29981	0.00014804	493.77264793882927	25.367	0.77211	25.335	25.021	25.793	-0.031408					76	27	4	0	0	0	0.0054984	3	4001	4001;4047;4093		86.332	32.499	1	868990			42790	5089	24693	24694	52258;52259;52260	52258					0.03714804014953188
SINAVPRSWK	10	Unmodified	_SINAVPRSWK_					0	0	0			REV__ENSG00000101204|ENST00000370263|CHRNA4	REV__ENSG00000101204|ENST00000370263|CHRNA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.8115844726562	2	579.324922	1156.63529	0.87665	0.00050787	0.25248	0.00014627	1.1291	0.00065413	579.8266800363912	47.308	0.21047	47.362	47.256	47.466	0.054371					10	7	2	0	0	0	0.3144	1	10699	10699		13.042	1.4022	1	170490	+		42791	14257	24694	24695	52261	52261					0.06323925491528826
SINDILRSI	9	Unmodified	_SINDILRSI_					0	0	0			REV__ENST00000520285.5_1_5:71590560-71616015:-|nuORF	REV__ENST00000520285.5_1_5:71590560-71616015:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.29052734375	2	515.798206	1029.58186	-0.074743	-3.8552E-05	-0.33886	-0.00017478	-0.4136	-0.00021333	515.797828986315	30.041	0.38245	30.068	29.838	30.22	0.027157					22	12	2	0	0	0	0.21538	1	5408	5408		26.268	5.8145	1	241170	+		42792	14794	24695	24696	52262	52262					0.06825127989009161
SINELRYL	8	Unmodified	_SINELRYL_					0	0	0			REV__BANK1|p.F65I|1|0.29|ENSG00000153064|chr4:101829930-101829930|T/A|missense_variant	REV__BANK1|p.F65I|1|0.29|ENSG00000153064|chr4:101829930-101829930|T/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2804260253906	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.546	1	86.537	86.037	87.037	-0.0090027								0	0	0	0.35843	1	22766	22766		10.824	3.5347	1		+		42793	13121	24696	24697	52263	52263					0.04173456443231771
SINFEDNDVSK	11	Unmodified	_SINFEDNDVSK_					0	0	0			REV__nc|ENSG00000139304|Q9UMZ3|PTPRQ	REV__nc|ENSG00000139304|Q9UMZ3|PTPRQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.9189453125	3	423.198213	1266.57281	-0.072027	-3.0482E-05	0.81913	0.00034665	0.7471	0.00031617	423.19865998305227	38.179	0.42112	38.179	37.956	38.377	0					19	14	2	0	0	0	0.33085	1	7952	7952		5.5233	2.2037	1	168480	+		42794	15980	24697	24698	52264	52264					-0.04981310158018459
SINFEDNDVSK	11	Unmodified	_SINFEDNDVSK_					0	0	0			REV__nc|ENSG00000139304|Q9UMZ3|PTPRQ	REV__nc|ENSG00000139304|Q9UMZ3|PTPRQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.9191589355469	3	423.198213	1266.57281	0.00903	3.8215E-06	0.72792	0.00030805	0.73695	0.00031188	423.19845414502805	38.056	0.43911	38.147	37.934	38.373	0.090881					26	15	2	0	0	0	0.33112	1	7944	7944		7.846	2.949	1	129520	+		42795	15980	24697	24698	52265	52265					-0.04981310158018459
SINHNEYWY	9	Unmodified	_SINHNEYWY_					0	0	0			REV__ENSG00000179639|ENST00000693622|FCER1A	REV__ENSG00000179639|ENST00000693622|FCER1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.5564880371094	3	409.180605	1224.51999	0.22901	9.3704E-05	1.7489	0.00071563	1.9779	0.00080934	409.18110291545156	21.471	0.56494	21.371	21.043	21.608	-0.10034					41	19	3	0	0	0	0.26228	1	2886	2886		1.1933	0	1	68890	+		42796	18086	24698	24699	52266	52266					-0.08329223430155253
SINLDRPAD	9	Unmodified	_SINLDRPAD_					0	0	0			REV__ENSG00000128594|ENST00000249363|LRRC4	REV__ENSG00000128594|ENST00000249363|LRRC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.31341552734375	2	500.756538	999.498523	0.34762	0.00017407	0.51517	0.00025798	0.86279	0.00043205	500.75692467255084	24.512	0.34729	24.439	24.327	24.674	-0.072559					18	11	2	0	0	0	0.24688	1	3818	3818		14.838	0	1	38749	+		42797	15378	24699	24700	52267	52267					-0.0012460845886153038
SINLLLAQR	9	Unmodified	_SINLLLAQR_					0	0	0		ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF;nc|ENSG00000214160|Q92685-2|ALG3;ENSG00000214160|ENST00000397676|ALG3;ENST00000477959.1_1_3:183962361-183963122:-|nuORF;ENST00000488976.5_1_3:183962900-183966721:-|nuORF	ENST00000461415.5_1_3:183962900-183966669:-|nuORF	ENST00000461415.5_1_3:183962900-183966669:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.316650390625	2	514.316566	1026.61858	0.26853	0.00013811	-0.15467	-7.955E-05	0.11386	5.8559E-05	514.3163631970336	24.516	1.2194	24.516	24.194	25.413	0					54	41	2	0	0	0	0.31038	1	3812	3812		7.2892	0	1	114610			42798	8379	24700	24701	52268	52268					0.10633424605566688
SINLNAINK	9	Unmodified	_SINLNAINK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000398050.3_1_10:127355642-127355750:-|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7853698730469	2	493.785099	985.555644	0.33375	0.0001648	0.25278	0.00012482	0.58653	0.00028962	493.78521521614937	38.159	0.64439	38.159	37.926	38.571	0					51	22	4	0	0	0	0.00012746	1	7936	7936		136.39	40.026	1	831190			42799	4896	24701	24702	52269	52269					0.062288588175078985
SINLNAINK	9	Unmodified	_SINLNAINK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000398050.3_1_10:127355642-127355750:-|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7856750488281	2	493.785099	985.555644	0.45236	0.00022337	0.096507	4.7654E-05	0.54886	0.00027102	493.7851895455391	38.169	0.71433	38.26	37.906	38.62	0.090881					60	25	3	0	0	0	0.00012746	2	7910	7910;7958		136.39	29.452	1	1083300			42800	4896	24701	24702	52270;52271	52270					0.062288588175078985
SINLNAINK	9	Unmodified	_SINLNAINK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000398050.3_1_10:127355642-127355750:-|nuORF	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7853088378906	2	493.785099	985.555644	0.30797	0.00015207	0.15299	7.5546E-05	0.46096	0.00022761	493.78514493799435	38.065	0.69699	38.162	37.871	38.568	0.097527					64	24	4	0	0	0	0.0016724	2	7874	7874;7926		114.19	27.855	1	922800			42801	4896	24701	24702	52272;52273	52272					0.062288588175078985
SINLQACEELV	11	Unmodified	_SINLQACEELV_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.91912841796875	3	406.872673	1217.59619	0.12973	5.2785E-05	-2.5727	-0.0010468	-2.443	-0.00099397	406.8716484849977	29.373	0.57139	29.373	29.062	29.633	0					33	20	2	0	0	0	0.33198	1	5292	5292		2.084	0	1	98560			42802	5711	24702	24703	52274	52274					-0.0039058764505170984
SINPQTGQI	9	Unmodified	_SINPQTGQI_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.9747314453125	2	479.253631	956.49271	-0.083252	-3.9899E-05	0.34001	0.00016295	0.25676	0.00012305	479.2538485649584	38.547	0.60461	38.547	38.269	38.873	0					31	21	2	0	0	0	0.21538	1	8059	8059		15.248	3.0737	1	259180			42803	7830	24703	24704	52275	52275					0.012722930294785328
SINQLITMC	9	Unmodified	_SINQLITMC_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.8271179199219	2	511.754095	1021.49364	0.41399	0.00021186	-0.23099	-0.00011821	0.183	9.3653E-05	511.7538494981109	48.839	0.8523	48.839	48.636	49.488	0					62	30	5	0	0	0	0.20881	1	11283	11283		27.629	10.687	1	1662800			42804	4024	24704	24705	52276	52276					-0.016249519174948546
SINQLITMC	9	Unmodified	_SINQLITMC_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.8272705078125	2	511.754095	1021.49364	0.35097	0.00017961	-0.40906	-0.00020934	-0.058083	-2.9724E-05	511.75384410113566	48.874	0.93229	48.919	48.66	49.593	0.044891					64	33	3	0	0	0	0.22061	1	11298	11298		24.021	8.7721	1	1728200			42805	4024	24704	24705	52277	52277					-0.016249519174948546
SINQLITMC	9	Unmodified	_SINQLITMC_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.75384521484375	2	511.754095	1021.49364	0.15184	7.7703E-05	-0.51219	-0.00026212	-0.36036	-0.00018441	511.7540421816488	48.813	0.8626	48.845	48.632	49.494	0.032043					55	30	3	0	0	0	0.063853	1	11214	11214		47.749	7.799	1	1642400			42806	4024	24704	24705	52278	52278					-0.016249519174948546
SINTVKHDIK	10	Unmodified	_SINTVKHDIK_					0	0	0		CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant;ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2	CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant	CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.2727661132812	2	577.830037	1153.64552	0.18832	0.00010882	-0.18887	-0.00010914	-0.00055187	-3.1888E-07	577.8300870646746	27.061	0.59847	27.039	26.839	27.437	-0.021412					28	20	2	0	0	0	0.32054	1	4556	4556		3.2813	0	1	61451			42807	88	24705	24706	52279	52279					0.07484488426075586
SINTVKHDIK	10	Unmodified	_SINTVKHDIK_					0	0	0		CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant;ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2	CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant	CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.2725219726562	2	577.830037	1153.64552	0.21491	0.00012418	-0.30042	-0.00017359	-0.085514	-4.9413E-05	577.8303064753576	27.044	0.58691	27.032	26.851	27.438	-0.01156					30	20	2	0	0	0	0.32054	1	4606	4606		3.2813	0	1	70676			42808	88	24705	24706	52280	52280					0.07484488426075586
SIPCYDWPILP	11	Unmodified	_SIPCYDWPILP_					0	0	0			REV__nc|ENSG00000019991|P14210-3|HGF	REV__nc|ENSG00000019991|P14210-3|HGF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.74517822265625	3	435.217892	1302.63185	-0.28071	-0.00012217	2.4395	0.0010617	2.1588	0.00093956	435.552894407929	27.469	0.31892	27.469	27.354	27.673	0					14	10	2	0	0	0	0.3322	1	4677	4677		2.6312	1.039	1	91907	+		42809	13461	24706	24707	52281	52281					-0.00736505397367182
SIPELSYIWE	10	Unmodified	_SIPELSYIWE_					0	0	0		REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant;REPS2|p.D555Gfs*14|1|0.67|ENSG00000169891|chrX:17133904-17133905|-/A|frameshift_variant;nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.250732421875	3	412.876411	1235.6074	-0.1469	-6.0651E-05	-0.72493	-0.00029931	-0.87183	-0.00035996	412.8754755286691	18.062	0.16387	18.062	18.024	18.188	0					7	5	2	0	0	0	0.32033	1	1837	1837		1.7423	0.41263	1	12974			42810	6396	24707	24708	52282	52282					-0.0009744227922965365
SIPELSYIWE	10	Unmodified	_SIPELSYIWE_					0	0	0		REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant;REPS2|p.D555Gfs*14|1|0.67|ENSG00000169891|chrX:17133904-17133905|-/A|frameshift_variant;nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	412.876411	1235.6074	-0.078201	-3.2287E-05	-2.9617	-0.0012228	-3.0399	-0.0012551	412.8757889690711	18.272	0.1403	18.214	18.145	18.285	-0.058174	0.075782	-0.0017494	NaN	1.7423	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8371.4			42811	6396	24707	24708							-0.0009744227922965365
SIPESPGAV	9	Unmodified	_SIPESPGAV_					0	0	0		ENST00000376560.7_2_6:30530414-30530753:+|nuORF	ENST00000376560.7_2_6:30530414-30530753:+|nuORF	ENST00000376560.7_2_6:30530414-30530753:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.5243835449219	2	428.724175	855.433798	-0.082383	-3.532E-05	-1.5788	-0.00067685	-1.6611	-0.00071217	428.72392753560615	43.869	0.13456	43.947	43.841	43.975	0.077515					6	4	2	0	0	0	0.24311	1	9656	9656		7.2892	0	1	47071			42812	9924	24708	24709	52283	52283					0.00029816735138865624
SIPFITTV	8	Unmodified	_SIPFITTV_					0	0	0			REV__ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	REV__ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.25494384765625	2	439.255111	876.49567	0.075743	3.3271E-05	-0.074263	-3.262E-05	0.0014801	6.5016E-07	439.2549758849129	68.081	0.59798	68.081	67.783	68.381	0					44	21	3	0	0	0	0.41758	1	17176	17176		16.942	0	1	480020	+		42813	16519	24709	24710	52284	52284					0.052481681542644765
SIPFITTV	8	Unmodified	_SIPFITTV_					0	0	0			REV__ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	REV__ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.25494384765625	2	439.255111	876.49567	0.14495	6.367E-05	-0.10549	-4.6339E-05	0.039454	1.733E-05	439.2549408153627	67.961	0.59184	68.039	67.744	68.336	0.078049					46	20	3	0	0	0	0.25425	1	17084	17084		36.044	3.9272	1	425840	+		42814	16519	24709	24710	52285	52285					0.052481681542644765
SIPFTAFML	9	Unmodified	_SIPFTAFML_					0	0	0			REV__ENST00000519868.1_1_5:169502602-169506159:+|nuORF	REV__ENST00000519868.1_1_5:169502602-169506159:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.3088989257812	2	513.770071	1025.52559	0.38972	0.00020023	2.2953	0.0011793	2.685	0.0013795	513.7726055775902	40.373	0.1358	40.472	40.427	40.563	0.099403					6	4	2	0	0	0	0.2451	1	8599	8599		15.847	7.937	1	74611	+		42815	21876	24710	24711	52286	52286					0.013847838279616553
SIPHPCYNS	9	Unmodified	_SIPHPCYNS_					0	0	0		ENSG00000129455|ENST00000695909|KLK8;nc|ENSG00000129455|O60259-2|KLK8	ENSG00000129455|ENST00000695909|KLK8	ENSG00000129455|ENST00000695909|KLK8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8004150390625	2	509.226559	1016.43857	0.38066	0.00019384	0.76764	0.0003909	1.1483	0.00058474	509.22681504129713	68.837	0.53456	68.909	68.729	69.264	0.071938					32	19	2	0	0	0	0.24311	1	17398	17398		16.942	6.8684	1	214610			42816	3425	24711	24712	52287	52287					-0.06899622393757454
SIPHPCYNS	9	Unmodified	_SIPHPCYNS_					0	0	0		ENSG00000129455|ENST00000695909|KLK8;nc|ENSG00000129455|O60259-2|KLK8	ENSG00000129455|ENST00000695909|KLK8	ENSG00000129455|ENST00000695909|KLK8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8003845214844	2	509.226559	1016.43857	0.28242	0.00014381	0.91654	0.00046673	1.199	0.00061054	509.2267925877606	68.911	0.50313	68.892	68.709	69.212	-0.01915					29	17	2	0	0	0	0.24311	1	17397	17397		11.64	1.5664	1	248780			42817	3425	24711	24712	52288	52288					-0.06899622393757454
SIPKESSIQK	10	Unmodified	_SIPKESSIQK_					0	0	0		chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14;chr2:30924263-30924464|223|48.52|0.33|7.19|-|1|GALNT14,None|2	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.81640625	2	558.816596	1115.61864	0.20852	0.00011652	-0.21591	-0.00012066	-0.0073956	-4.1328E-06	558.816471244775	19.802	0.71471	19.802	19.493	20.207	0					81	26	4	0	0	0	0.22625	3	2362	2316;2362;2407		29.437	6.6588	1	668480			42818	149	24712	24713	52289;52290;52291	52290					0.06545379814906482
SIPKESSIQK	10	Unmodified	_SIPKESSIQK_					0	0	0		chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14;chr2:30924263-30924464|223|48.52|0.33|7.19|-|1|GALNT14,None|2	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8163452148438	2	558.816596	1115.61864	0.40963	0.00022891	-0.41626	-0.00023261	-0.0066272	-3.7034E-06	558.8163496495373	19.972	0.73888	19.856	19.514	20.253	-0.11592					75	25	4	0	0	0	0.10152	2	2424	2376;2424		47.732	24.996	1	663680			42819	149	24712	24713	52292;52293	52293					0.06545379814906482
SIPKESSIQK	10	Unmodified	_SIPKESSIQK_					0	0	0		chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14;chr2:30924263-30924464|223|48.52|0.33|7.19|-|1|GALNT14,None|2	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.8164672851562	2	558.816596	1115.61864	0.41236	0.00023043	-0.33867	-0.00018925	0.073691	4.118E-05	558.8163574988844	19.9	0.72781	19.844	19.544	20.272	-0.055693					82	26	4	0	0	0	0.067194	3	2388	2341;2388;2437		55.249	28.98	1	694780			42820	149	24712	24713	52294;52295;52296	52295					0.06545379814906482
SIPKRRMYFIW	11	Unmodified	_SIPKRRMYFIW_					0	0	0		ENST00000465270.5_1_1:156374320-156391357:-|nuORF	ENST00000465270.5_1_1:156374320-156391357:-|nuORF	ENST00000465270.5_1_1:156374320-156391357:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7668762207031	3	499.611346	1495.81221	-0.43961	-0.00021963	-2.5195	-0.0012588	-2.9591	-0.0014784	499.61002261022327	34.475	0.36242	34.475	34.362	34.725	0					16	12	2	0	0	0	0.33303	1	6789	6789		2.4348	0.97967	1	93855			42821	10794	24713	24714	52297	52297					0.08413638050137706
SIPQKPQTNK	10	Unmodified	_SIPQKPQTNK_					0	0	0		ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8240966796875	2	570.822212	1139.62987	-0.055052	-3.1425E-05	1.6483	0.00094088	1.5932	0.00090946	570.8231028294202	14.852	0.89516	14.852	14.423	15.319	0					63	31	3	0	0	0	0.31794	1	859	859		8.1555	0.8663	1	110640			42822	4531	24714	24715	52298	52298					0.06564201909031908
SIPQQRQKLK	10	Unmodified	_SIPQQRQKLK_					0	0	0		nc|ENSG00000167772|Q9BY76-2|ANGPTL4;ENSG00000167772|ENST00000301455|ANGPTL4;nc|ENSG00000167772|Q9BY76-3|ANGPTL4	nc|ENSG00000167772|Q9BY76-2|ANGPTL4	nc|ENSG00000167772|Q9BY76-2|ANGPTL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2504577636719	3	409.250695	1224.73025	-0.36298	-0.00014855	0.20387	8.3433E-05	-0.15911	-6.5117E-05	409.25080072393337	14.611	0.7057	14.611	14.448	15.154	0					62	24	4	0	0	0	0.32082	1	833	833		3.3196	0	1	306650			42823	6208	24715	24716	52299	52299					0.12687858962704013
SIPRRRSF	8	Unmodified	_SIPRRRSF_					0	0	0			REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR	REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.78826904296875	2	509.798875	1017.5832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.238	1	53.294	52.794	53.794	0.056255								0	0	0	0.33432	1	12555	12555		21.747	2.4897	1		+		42824	16041	24716	24717	52300	52300					0.07510806868413056
SIPVVSHNT	9	Unmodified	_SIPVVSHNT_					0	0	0			REV__HIVEP1|p.S2208Qfs*19|1|0.2|ENSG00000095951|chr6:12161570-12161570|C/-|frameshift_variant	REV__HIVEP1|p.S2208Qfs*19|1|0.2|ENSG00000095951|chr6:12161570-12161570|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.80291748046875	2	477.256174	952.497795	0.37395	0.00017847	4.4014	0.0021006	4.7754	0.0022791	477.2584944880287	45.086	0.40258	45.161	45.016	45.418	0.07505					17	14	2	0	0	0	0.22596	1	10106	10106		21.747	0	1	196820	+		42825	14108	24717	24718	52301	52301					0.019645968920940504
SIQDLKSF	8	Unmodified	_SIQDLKSF_					0	0	0		nc|ENSG00000155719|Q7RTW8-3|OTOA;ENST00000563506.1_1_16:21742071-21771858:+|nuORF;nc|ENSG00000155719|Q7RTW8-2|OTOA;nc|ENSG00000155719|Q7RTW8-4|OTOA;ENSG00000155719|ENST00000646100|OTOA;nc|ENSG00000155719|Q7RTW8|OTOA	nc|ENSG00000155719|Q7RTW8-3|OTOA	nc|ENSG00000155719|Q7RTW8-3|OTOA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7663879394531	2	469.2531	936.491647	-0.22333	-0.0001048	1.825	0.00085639	1.6017	0.00075159	469.253860650216	27.77	0.68577	27.749	27.464	28.15	-0.021412					35	23	2	0	0	0	0.28088	1	4741	4741		39.957	9.7325	1	136630			42826	5190	24718	24719	52302	52302					0.0208607866057946
SIQFCTQRF	9	Unmodified	_SIQFCTQRF_					0	0	0		USH2A|p.T2648Yfs*13|1|0.13|ENSG00000042781|chr1:215888708-215888709|-/G|frameshift_variant;USH2A|p.F2200Gfs*16|1|0.03|ENSG00000042781|chr1:215998947-215998948|-/CTCTCTTCCC|frameshift_variant;USH2A|p.D2872Rfs*17|1|0.23|ENSG00000042781|chr1:215877825-215877826|-/T|frameshift_variant;USH2A|p.T445Lfs*13|1|0.04|ENSG00000042781|chr1:216323691-216323691|T/-|frameshift_variant;nc|ENSG00000042781|O75445-2|USH2A;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	USH2A|p.T2648Yfs*13|1|0.13|ENSG00000042781|chr1:215888708-215888709|-/G|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.2891845703125	2	565.276583	1128.53861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.446	1	51.456	50.956	51.956	0.0095634								0	0	0	0.2362	1	11997	11997		10.824	0	1				42827	615;23409	24719	24720	52303	52303					-0.02051385059940003
SIQHPLIKK	9	Unmodified	_SIQHPLIKK_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3348999023438	2	532.334759	1062.65496	0.4784	0.00025467	-0.29592	-0.00015753	0.18248	9.7139E-05	532.334572630609	17.237	0.35316	17.237	17.014	17.368	0					21	12	2	0	0	0	0.33508	1	1582	1582		3.5965	1.9439	1	55398			42828	4987	24720	24721	52304	52304					0.12614301502276248
SIQHPLIKK	9	Unmodified	_SIQHPLIKK_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3349609375	2	532.334759	1062.65496	0.5122	0.00027266	-0.47693	-0.00025388	0.035269	1.8775E-05	532.3343303208777	17.308	0.41786	17.247	17.026	17.444	-0.060429					24	14	2	0	0	0	0.29638	1	1616	1616		9.3831	5.7866	1	54556			42829	4987	24720	24721	52305	52305					0.12614301502276248
SIQITWAF	8	Unmodified	_SIQITWAF_					0	0	0			REV__ENSG00000143324|ENST00000367590|XPR1	REV__ENSG00000143324|ENST00000367590|XPR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.25750732421875	2	483.258185	964.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.521	1	80.521	80.021	81.021	0								0	0	0	0.37595	1	20932	20932		2.8892	0	1		+		42830	16162	24721	24722	52306	52306					0.01814686385796449
SIQKPYNQK	9	Unmodified	_SIQKPYNQK_					0	0	0		nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENST00000367218.7_1_1:203702465-203708979:+|nuORF;ENST00000484746.1_3_1:203702465-203708979:+|nuORF	nc|ENSG00000058668|P23634|ATP2B4	nc|ENSG00000058668|P23634|ATP2B4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3043823242188	2	553.303655	1104.59276	0.13093	7.2442E-05	0.6544	0.00036208	0.78533	0.00043453	553.3040953612506	15.02	0.47456	14.91	14.618	15.093	-0.10981					41	16	3	0	0	0	0.18803	1	876	876		25.399	3.8623	1	154710			42831	735	24722	24723	52307	52307					0.04464530363270569
SIQPKPLLL	9	Unmodified	_SIQPKPLLL_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2770690917969	2	504.826235	1007.63792	0.26916	0.00013588	0.25312	0.00012778	0.52229	0.00026366	504.8263432926238	53.849	0.44419	53.905	53.664	54.108	0.056255					28	16	2	0	0	0	0.24289	1	12752	12752		18.146	1.2041	1	281800			42832	2821	24723	24724	52308	52308					0.13440380896463466
SIQPSLNAI	9	Unmodified	_SIQPSLNAI_					0	0	0		ENSG00000105723|ENST00000222330|GSK3A;ENST00000493059.1_1_19:42734948-42736858:-|nuORF	ENSG00000105723|ENST00000222330|GSK3A	ENSG00000105723|ENST00000222330|GSK3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.7662353515625	2	471.766374	941.518196	0.086159	4.0647E-05	-0.30358	-0.00014322	-0.21742	-0.00010257	471.7661728139343	67.582	0.60175	67.582	67.309	67.911	0					44	20	3	0	0	0	0.023967	1	16965	16965		62.573	6.3957	1	446910			42833	2017	24724	24725	52309	52309					0.04509767551905952
SIQRKLQEK	9	Unmodified	_SIQRKLQEK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;FAM13A|p.F877Rfs*3|1|0.19|ENSG00000138640|chr4:88737484-88737490|GAAGAAG/-|frameshift_variant;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.3379516601562	2	565.33803	1128.66151	-0.051547	-2.9142E-05	0.1188	6.7163E-05	0.067254	3.8021E-05	565.3380425051507	14.102	0.48588	14.102	13.962	14.448	0					31	16	3	0	0	0	0.014058	1	623	623		73.196	29.424	1	371490			42834	4170	24725	24726	52310	52310					0.10232194662989968
SIQRKLQEK	9	Unmodified	_SIQRKLQEK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;FAM13A|p.F877Rfs*3|1|0.19|ENSG00000138640|chr4:88737484-88737490|GAAGAAG/-|frameshift_variant;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.3381958007812	2	565.33803	1128.66151	0.044295	2.5041E-05	-0.011715	-6.6229E-06	0.03258	1.8419E-05	565.3379683755849	14.213	0.46108	14.108	13.961	14.422	-0.10466					30	15	3	0	0	0	0.053792	1	655	655		51.488	21.647	1	325110			42835	4170	24725	24726	52311	52311					0.10232194662989968
SIQRKLQEK	9	Unmodified	_SIQRKLQEK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;FAM13A|p.F877Rfs*3|1|0.19|ENSG00000138640|chr4:88737484-88737490|GAAGAAG/-|frameshift_variant;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.337890625	2	565.33803	1128.66151	-0.079724	-4.5071E-05	0.013864	7.8379E-06	-0.06586	-3.7233E-05	565.3379443579503	14.188	0.50596	14.122	13.949	14.455	-0.066068					40	17	4	0	0	0	0.0083763	1	642	642		81.915	34.321	1	266970			42836	4170	24725	24726	52312	52312					0.10232194662989968
SIQRPRLLQPY	11	Unmodified	_SIQRPRLLQPY_					0	0	0		ENST00000432607.1_1_19:41314716-41315658:-|nuORF	ENST00000432607.1_1_19:41314716-41315658:-|nuORF	ENST00000432607.1_1_19:41314716-41315658:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.9026794433594	3	457.601616	1369.78302	0.2793	0.00012781	-0.55967	-0.0002561	-0.28036	-0.00012829	457.6015610050276	36.116	0.408	36.199	35.9	36.308	0.082359					23	14	2	0	0	0	0.33207	1	7298	7298		5.5233	1.647	1	159060			42837	10483	24726	24727	52313	52313					0.11291817025517048
SIQSVKFK	8	Unmodified	_SIQSVKFK_					0	0	0			REV__THE1D-int_dup324|chr2:208859014-208859767:+|2.4653422611636326|0.1480688773718127|4.06|526.0|43|3|anti-sense	REV__THE1D-int_dup324|chr2:208859014-208859767:+|2.4653422611636326|0.1480688773718127|4.06|526.0|43|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7663879394531	2	468.779285	935.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.705	1	27.684	27.184	28.184	-0.021412								0	0	0	0.33717	1	4741	4741		20.454	1.1966	1		+		42838	23331	24727	24728	52314	52314					0.07366661794185347
SIRASGLIL	9	Unmodified	_SIRASGLIL_					0	0	0		ENSG00000151025|ENST00000376351|GPR158	ENSG00000151025|ENST00000376351|GPR158	ENSG00000151025|ENST00000376351|GPR158	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.29254150390625	2	465.292559	928.570566	0.096774	4.5028E-05	-0.66824	-0.00031093	-0.57147	-0.0002659	465.292252433578	59.974	0.54578	59.963	59.652	60.198	-0.011486					27	18	2	0	0	0	0.17277	1	14639	14639		27.629	0	1	595880			42839	4933	24728	24729	52315	52315					0.10342350685516521
SIRDFLVTL	9	Unmodified	_SIRDFLVTL_					0	0	0		nc|ENSG00000132334|P23469-3|PTPRE;nc|ENSG00000132334|P23469-2|PTPRE;ENSG00000132334|ENST00000254667|PTPRE;ENST00000479896.1_1_10:129869671-129881167:+|nuORF	nc|ENSG00000132334|P23469-3|PTPRE	nc|ENSG00000132334|P23469-3|PTPRE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3108520507812	2	532.310949	1062.60735	0.79213	0.00042166	-1.1582	-0.00061652	-0.36606	-0.00019486	532.3105247546819	74.868	0.74575	74.868	74.432	75.178	0					42	26	2	0	0	0	0.09758	1	19207	19207		38.615	4.213	1	507350			42840	3621	24729	24730	52316	52316					0.0785460251142922
SIRDFLVTL	9	Unmodified	_SIRDFLVTL_					0	0	0		nc|ENSG00000132334|P23469-3|PTPRE;nc|ENSG00000132334|P23469-2|PTPRE;ENSG00000132334|ENST00000254667|PTPRE;ENST00000479896.1_1_10:129869671-129881167:+|nuORF	nc|ENSG00000132334|P23469-3|PTPRE	nc|ENSG00000132334|P23469-3|PTPRE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3109130859375	2	532.310949	1062.60735	0.37561	0.00019994	-0.79391	-0.00042261	-0.41829	-0.00022266	532.310701588689	74.797	0.62868	74.849	74.64	75.269	0.052361					40	22	2	0	0	0	0.09758	1	19174	19174		38.615	9.5332	1	572060			42841	3621	24729	24730	52317	52317					0.0785460251142922
SIRDFLVTL	9	Unmodified	_SIRDFLVTL_					0	0	0		nc|ENSG00000132334|P23469-3|PTPRE;nc|ENSG00000132334|P23469-2|PTPRE;ENSG00000132334|ENST00000254667|PTPRE;ENST00000479896.1_1_10:129869671-129881167:+|nuORF	nc|ENSG00000132334|P23469-3|PTPRE	nc|ENSG00000132334|P23469-3|PTPRE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7665405273438	2	532.310949	1062.60735	0.75069	0.0003996	-1.8774	-0.00099934	-1.1267	-0.00059974	532.3103830451438	74.929	0.84859	74.898	74.387	75.235	-0.031479					67	30	3	0	0	0	0.18479	1	19195	19195		34.932	7.3033	1	420240			42842	3621	24729	24730	52318	52318					0.0785460251142922
SIREERQKRLL	11	Unmodified	_SIREERQKRLL_					0	0	0			REV__ENSG00000183644|ENST00000375618|HOATZ	REV__ENSG00000183644|ENST00000375618|HOATZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.2926940917969	3	476.619558	1426.83684	0.14613	6.9651E-05	-2.974	-0.0014175	-2.8279	-0.0013478	476.61853423263216	39.491	0.33038	39.583	39.39	39.72	0.09267					15	11	2	0	0	0	0.33189	1	8299	8299		1.9275	1.5192	1	162170	+		42843	18274	24730	24731	52319	52319					0.14049989457203083
SIREHSEWTL	10	Unmodified	_SIREHSEWTL_					0	0	0			REV__ENSG00000160396|ENST00000291823|HIPK4	REV__ENSG00000160396|ENST00000291823|HIPK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.9197998046875	3	419.878926	1256.61495	-0.17448	-7.3262E-05	-0.66605	-0.00027966	-0.84053	-0.00035292	419.8784823380156	23.854	0.46492	23.854	23.669	24.134	0					38	15	3	0	0	0	0.31289	1	3583	3583		12.175	1.8595	1	113540	+		42844	16901	24731	24732	52320	52320					-0.003092899589546505
SIREHSEWTL	10	Unmodified	_SIREHSEWTL_					0	0	0			REV__ENSG00000160396|ENST00000291823|HIPK4	REV__ENSG00000160396|ENST00000291823|HIPK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.9198913574219	3	419.878926	1256.61495	0.13837	5.8101E-05	-0.98145	-0.00041209	-0.84307	-0.00035399	419.8783130179993	23.991	0.5131	23.952	23.765	24.278	-0.038927					38	17	3	0	0	0	0.31433	1	3625	3625		14.957	1.4385	1	164900	+		42845	16901	24731	24732	52321	52321					-0.003092899589546505
SIRGDLHHFF	10	Unmodified	_SIRGDLHHFF_					0	0	0			REV__ENST00000476347.1_1_13:26793531-26793786:-|nuORF	REV__ENST00000476347.1_1_13:26793531-26793786:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.88824462890625	3	410.21224	1227.61489	-0.10934	-4.4852E-05	1.4092	0.00057806	1.2998	0.00053321	410.21244857626243	22.382	0.7479	22.337	21.931	22.679	-0.044867					68	25	5	0	0	0	0.3183	1	3216	3216		5.4027	3.4963	1	346780	+		42846	21422	24732	24733	52322	52322					0.010187548316935136
SIRHMIRKNK	10	Unmodified	_SIRHMIRKNK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8828125	2	641.879873	1281.74519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.935	1	94.935	94.435	95.435	0								0	0	0	0.38126	1	25335	25335		1.6526	0	1				42847	2165	24733	24734	52323	52323					0.11559027559064816
SIRLSSELT	9	Unmodified	_SIRLSSELT_					0	0	0			REV__L1PA15_dup628|chr2:34747347-34748523:+|1.664451808161501|0.1605763786806046|3.37|528.0|36|3|sense	REV__L1PA15_dup628|chr2:34747347-34748523:+|1.664451808161501|0.1605763786806046|3.37|528.0|36|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.8004455566406	2	503.282389	1004.55022	0.55892	0.00028129	-1.9799	-0.00099647	-1.421	-0.00071518	503.78153509499805	64.014	0.54518	64.014	63.771	64.316	0					32	19	2	0	0	0	0.24311	1	15947	15947		11.64	0	1	262630	+		42848	22806	24734	24735	52324	52324					0.04813135235031041
SIRMKLWIFLP	11	Unmodified	_SIRMKLWIFLP_					0	0	0			REV__ENSG00000169777|ENST00000382492|TAS2R1	REV__ENSG00000169777|ENST00000382492|TAS2R1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.25311279296875	3	468.612576	1402.8159	-0.012646	-5.9259E-06	-0.34176	-0.00016015	-0.3544	-0.00016608	468.6124987222993	34.113	0.93361	34.179	33.845	34.779	0.06636					94	33	4	0	0	0	0.33287	1	6599	6599		2.8433	1.5136	1	749520	+		42849	17539	24735	24736	52325	52325					0.13060307824002848
SIRNKNRLQL	10	Unmodified	_SIRNKNRLQL_					0	0	0		nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2038879394531	3	414.586077	1240.7364	0.34496	0.00014301	2.1322	0.00088399	2.4772	0.001027	414.9210368321277	29.742	0.1185	29.754	29.685	29.803	0.012266					5	3	2	0	0	0	0.31867	1	5358	5358		7.9454	0.51632	1	19530			42850	6552	24736	24737	52326	52326					0.12566377194207234
SIRPPLNLF	9	Unmodified	_SIRPPLNLF_					0	0	0			REV__ENSG00000249853|ENST00000312719|HS3ST5	REV__ENSG00000249853|ENST00000312719|HS3ST5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.271484375	2	528.813659	1055.61277	0.48508	0.00025652	-0.51669	-0.00027323	-0.031608	-1.6715E-05	528.8135645375942	87.962	2.5823	88.051	86.756	89.338	0.089203					179	121	2	0	0	0	0.24688	1	23200	23200		10.074	0	1	154520	+		42851	19212	24737	24738	52327	52327					0.0871832609386729
SIRRDREL	8	Unmodified	_SIRRDREL_					0	0	0			REV__nc|ENSG00000257594|Q8N4A0-2|GALNT4	REV__nc|ENSG00000257594|Q8N4A0-2|GALNT4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7902221679688	2	522.799072	1043.58359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.045	1	55.045	54.545	55.545	0								0	0	0	0.33213	1	13116	13116		22.736	0.98964	1		+		42852	22180	24738	24739	52328	52328					0.06354181797610181
SIRRGFQVYK	10	Unmodified	_SIRRGFQVYK_					0	0	0		ENSG00000179091|ENST00000318911|CYC1;ENST00000533444.1_1_8:145150729-145152236:+|nuORF	ENSG00000179091|ENST00000318911|CYC1	ENSG00000179091|ENST00000318911|CYC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.57513427734375	3	418.57529	1252.70404	-0.15818	-6.621E-05	-0.49895	-0.00020885	-0.65713	-0.00027506	418.57508943895283	25.456	0.83654	25.456	25.064	25.9	0					94	28	5	0	0	0	0.041387	3	4060	4018;4060;4104		60.899	37.098	1	1514700			42853	7101	24739	24740	52329;52330;52331	52330					0.08779589791220133
SIRRGFQVYK	10	Unmodified	_SIRRGFQVYK_					0	0	0		ENSG00000179091|ENST00000318911|CYC1;ENST00000533444.1_1_8:145150729-145152236:+|nuORF	ENSG00000179091|ENST00000318911|CYC1	ENSG00000179091|ENST00000318911|CYC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.5751037597656	3	418.57529	1252.70404	-0.14734	-6.1673E-05	-0.5029	-0.0002105	-0.65024	-0.00027218	418.57508108601417	25.494	0.80218	25.438	25.023	25.826	-0.055931					79	27	4	0	0	0	0.08437	2	4091	4043;4091		51.488	27.687	1	1858800			42854	7101	24739	24740	52332;52333	52333					0.08779589791220133
SIRRGFQVYK	10	Unmodified	_SIRRGFQVYK_					0	0	0		ENSG00000179091|ENST00000318911|CYC1;ENST00000533444.1_1_8:145150729-145152236:+|nuORF	ENSG00000179091|ENST00000318911|CYC1	ENSG00000179091|ENST00000318911|CYC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5751037597656	3	418.57529	1252.70404	-0.17066	-7.1436E-05	-0.50459	-0.00021121	-0.67525	-0.00028264	418.57507541524836	25.571	0.80618	25.539	25.154	25.96	-0.031408					84	28	4	0	0	0	0.067194	2	4098	4050;4098		55.249	31.448	1	1728800			42855	7101	24739	24740	52334;52335	52335					0.08779589791220133
SIRSCFPSLF	10	Unmodified	_SIRSCFPSLF_					0	0	0		ENSG00000143224|ENST00000367999|PPOX;ENST00000495483.5_2_1:161137139-161146869:+|nuORF	ENSG00000143224|ENST00000367999|PPOX	ENSG00000143224|ENST00000367999|PPOX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.794677734375	2	578.794609	1155.57467	0.52649	0.00030473	-0.41119	-0.00023799	0.1153	6.6735E-05	578.7945441167591	45.53	0.95876	45.589	45.084	46.043	0.059837					75	33	4	0	0	0	0.18562	1	10078	10078		34.402	5.3201	1	778740			42856	4491	24740	24741	52336	52336					0.0031007211689484393
SIRSPRTL	8	Unmodified	_SIRSPRTL_					0	0	0			REV__ENST00000495287.1_1_3:138654865-138655105:-|nuORF	REV__ENST00000495287.1_1_3:138654865-138655105:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7786865234375	2	465.279983	928.545414	0.22828	0.00010621	-0.55573	-0.00025857	-0.32745	-0.00015236	465.2795591446825	78.906	0.87785	78.906	78.511	79.388	0					81	35	3	0	0	0	0.34319	1	20503	20503		2.5775	0	1	351520	+		42857	21658	24741	24742	52337	52337					0.07828295882939074
SISAGLLIK	9	Unmodified	_SISAGLLIK_					0	0	0			REV__ENST00000373670.5_1_9:125611733-125611871:-|nuORF	REV__ENST00000373670.5_1_9:125611733-125611871:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.6002197265625	2	451.289485	900.564418	0.72609	0.00032768	-0.49001	-0.00022114	0.23609	0.00010654	451.2891560897976	56.244	0.34332	56.323	56.17	56.513	0.078674					15	12	2	0	0	0	0.12743	1	13494	13494		37.974	1.847	1	265000	+		42858	20447	24742	24743	52338	52338					0.11015832453983876
SISAQGVEEM	10	Unmodified	_SISAQGVEEM_					0	0	0		ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2847900390625	2	525.742239	1049.46993	0.56237	0.00029566	-0.96854	-0.0005092	-0.40618	-0.00021355	525.742183805775	63.305	0.44163	63.401	63.122	63.564	0.095722					25	15	2	0	0	0	0.31629	1	15604	15604		6.2058	0	1	219990			42859	7230	24743	24744	52339	52339					-0.05283094150308898
SISDKFFQK	9	Unmodified	_SISDKFFQK_					0	0	0		HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;nc|ENSG00000089472|Q9BQS7-4|HEPH	HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7479858398438	2	550.292756	1098.57096	0.69424	0.00038204	-1.1319	-0.0006229	-0.43769	-0.00024086	550.2920477147887	37.03	0.88691	37.03	36.616	37.503	0					78	31	4	0	0	0	0.1335	1	7610	7610		47.594	25.848	1	993960			42860	1359	24744	24745	52340	52340					0.025617256147143053
SISDKFFQK	9	Unmodified	_SISDKFFQK_					0	0	0		HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;nc|ENSG00000089472|Q9BQS7-4|HEPH	HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7478637695312	2	550.292756	1098.57096	0.54625	0.0003006	-1.2684	-0.00069797	-0.72211	-0.00039737	550.2919940938868	36.861	0.70563	36.949	36.706	37.412	0.08741					76	25	4	0	0	0	0.11018	1	7554	7554		53.404	29.383	1	1115500			42861	1359	24744	24745	52341	52341					0.025617256147143053
SISDKFFQK	9	Unmodified	_SISDKFFQK_					0	0	0		HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;nc|ENSG00000089472|Q9BQS7-4|HEPH	HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7479858398438	2	550.292756	1098.57096	0.72276	0.00039773	-1.5677	-0.00086269	-0.84493	-0.00046496	550.2919190387004	36.889	0.65907	36.982	36.764	37.423	0.093014					42	23	2	0	0	0	0.1558	1	7546	7546		41.956	20.209	1	1201100			42862	1359	24744	24745	52342	52342					0.025617256147143053
SISDVGFGMLK	11	Oxidation (M)	_SISDVGFGM(Oxidation (M))LK_		SISDVGFGM(1)LK		SISDVGFGM(120)LK	0	0	1		ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.799072265625	2	585.297181	1168.57981	0.42156	0.00024674	0.17262	0.00010103	0.59419	0.00034778	585.2972382506397	51.372	1.0548	51.381	51.016	52.07	0.0095634					90	39	3	0	0	0	9.3071E-06	1	12046	12046		124.95	79.253	1	4938000			42863	495	24745	24746	52343	52343		53			0.0022633118885551085
SISDVGFGMLK	11	Oxidation (M)	_SISDVGFGM(Oxidation (M))LK_					0	0	1		ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	585.297181	1168.57981	0.47703	0.00027921	0.11149	6.5255E-05	0.58852	0.00034446	585.2971939650467	51.261	1.324	51.261	51.03	52.354	0	-0.063828	-6.1118E-05	NaN	124.95	90	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5157900			42864	495	24745	24746				53			0.0022633118885551085
SISEFILRR	9	Unmodified	_SISEFILRR_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8525390625	2	560.827298	1119.64004	0.6183	0.00034676	-0.94307	-0.0005289	-0.32477	-0.00018214	560.8268767576029	47.04	0.31435	47.04	46.873	47.187	0					13	10	2	0	0	0	0.18123	1	10667	10667		27.629	9.4825	1	278230			42865	742	24746	24747	52344	52344					0.08500809634278994
SISFWKKS	8	Unmodified	_SISFWKKS_					0	0	0		ENST00000580498.5_1_17:57287412-57290261:+|nuORF	ENST00000580498.5_1_17:57287412-57290261:+|nuORF	ENST00000580498.5_1_17:57287412-57290261:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.8113098144531	2	491.77146	981.528367	0.037527	1.8455E-05	0.19527	9.603E-05	0.2328	0.00011448	491.7714876443169	42.405	0.31878	42.405	42.306	42.624	0					14	11	2	0	0	0	0.34247	1	9276	9276		2.0598	0	1	178760			42866	12075	24747	24748	52345	52345					0.03686375277140996
SISGWLKVS	9	Unmodified	_SISGWLKVS_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2706298828125	2	488.776742	975.538931	0.36327	0.00017756	0.29132	0.00014239	0.65459	0.00031995	488.77673645166425	37.899	0.5202	37.99	37.744	38.264	0.090881					31	18	2	0	0	0	0.20651	1	7900	7900		26.884	1.4843	1	301970	+		42867	14382	24748	24749	52346	52346					0.05018357931567152
SISGWLKVS	9	Unmodified	_SISGWLKVS_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2702941894531	2	488.776742	975.538931	0.28384	0.00013874	0.32747	0.00016006	0.61131	0.0002988	488.7767352070874	37.766	0.54766	37.864	37.628	38.176	0.097527					31	19	2	0	0	0	0.20651	1	7872	7872		20.454	0	1	249310	+		42868	14382	24748	24749	52347	52347					0.05018357931567152
SISINLVGSS	10	Unmodified	_SISINLVGSS_					0	0	0		nc|ENSG00000236301|Q2M3A8|MRGPRG-AS1	nc|ENSG00000236301|Q2M3A8|MRGPRG-AS1	nc|ENSG00000236301|Q2M3A8|MRGPRG-AS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7873840332031	2	488.769114	975.523675	0.20233	9.8893E-05	2.3635	0.0011552	2.5659	0.0012541	488.77046800388393	26.647	0.45768	26.647	26.44	26.897	0					27	15	2	0	0	0	0.22295	1	4395	4395		29.841	0	1	198630			42869	12960	24749	24750	52348	52348					0.034934463437252816
SISINLVGSS	10	Unmodified	_SISINLVGSS_					0	0	0		nc|ENSG00000236301|Q2M3A8|MRGPRG-AS1	nc|ENSG00000236301|Q2M3A8|MRGPRG-AS1	nc|ENSG00000236301|Q2M3A8|MRGPRG-AS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.787353515625	2	488.769114	975.523675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.692	1	26.653	26.153	27.153	-0.038671								0	0	0	0.32869	1	4433	4433		23.79	1.0535	1				42870	12960	24749	24750	52349	52349					0.034934463437252816
SISLQVALVVK	11	Unmodified	_SISLQVALVVK_					0	0	0		ENST00000316059.6_1_11:58352348-58378460:+|nuORF	ENST00000316059.6_1_11:58352348-58378460:+|nuORF	ENST00000316059.6_1_11:58352348-58378460:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3693237304688	2	578.868631	1155.72271	0.31953	0.00018496	-0.40918	-0.00023686	-0.089653	-5.1897E-05	578.8684598558439	63.447	0.2466	63.447	63.285	63.532	0					12	8	2	0	0	0	0.006514	1	15725	15725		77.049	25.633	1	190030			42871	9355	24750	24751	52350	52350					0.15107706642402263
SISNANIKI	9	Unmodified	_SISNANIKI_					0	0	0		ENSG00000101425|ENST00000642449|BPI;nc|ENSG00000101425|P17213|BPI	ENSG00000101425|ENST00000642449|BPI	ENSG00000101425|ENST00000642449|BPI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.30340576171875	2	480.279649	958.544745	-0.11541	-5.5427E-05	-1.9348	-0.00092922	-2.0502	-0.00098465	480.2788521713203	13.503	0.50119	13.404	13.217	13.718	-0.099291					23	17	2	0	0	0	0.25706	1	400	400		6.7232	0	1	64697			42872	1699	24751	24752	52351	52351					0.06381456443216393
SISRESLLS	9	Unmodified	_SISRESLLS_					0	0	0			REV__ENSG00000196171|ENST00000359610|OR6K2	REV__ENSG00000196171|ENST00000359610|OR6K2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2665100097656	2	496.274564	990.534574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.226	1	80.291	79.791	80.791	0.065094								0	0	0	0.20639	1	20830	20830		20.454	3.5113	1		+		42873	18626	24752	24753	52352	52352					0.038928487180101
SISRKKKQ	8	Unmodified	_SISRKKKQ_					0	0	0		ENST00000606901.1_1_5:140705901-140706042:+|nuORF	ENST00000606901.1_1_5:140705901-140706042:+|nuORF	ENST00000606901.1_1_5:140705901-140706042:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7921447753906	2	487.808908	973.603263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.485	1	70.46	69.96	70.96	-0.024872								0	0	0	0.35466	1	17853	17853		12.532	0	1				42874	12304	24753	24754	52353	52353					0.11540557808370977
SISRSLETI	9	Unmodified	_SISRSLETI_					0	0	0			REV__nc|ENSG00000149636|Q9H410-2|DSN1	REV__nc|ENSG00000149636|Q9H410-2|DSN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.80047607421875	2	503.282389	1004.55022	0.5518	0.00027771	-2.7593	-0.0013887	-2.2075	-0.001111	503.78144662455213	64.029	0.61936	64.02	63.769	64.389	-0.0095291					32	22	2	0	0	0	0.22596	1	15935	15935		15.847	0	1	285570	+		42875	16479	24754	24755	52354	52354					0.04813135235053778
SISRSLETI	9	Unmodified	_SISRSLETI_					0	0	0			REV__nc|ENSG00000149636|Q9H410-2|DSN1	REV__nc|ENSG00000149636|Q9H410-2|DSN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	503.282389	1004.55022	0.46428	0.00023366	-1.9856	-0.00099929	-1.5213	-0.00076563	503.7814858243843	63.929	0.55237	64.022	63.618	64.17	0.092884	0.0034125	0.00027578	NaN	10.824	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248530	+		42876	16479	24754	24755							0.04813135235053778
SISSGPIQK	9	Unmodified	_SISSGPIQK_					0	0	0		ENSG00000006611|ENST00000005226|USH1C;nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C	ENSG00000006611|ENST00000005226|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C	nc|ENSG00000006611|Q9Y6N9-4|USH1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.75860595703125	2	458.758549	915.502546	-0.057544	-2.6399E-05	0.35064	0.00016086	0.29309	0.00013446	458.7586420235647	22.278	0.87896	22.278	21.966	22.845	0					87	30	4	0	0	0	0.00012108	3	3102	3058;3102;3144		137.42	65.502	1	1930800			42877	364;12559	24755	24756	52355;52356;52357	52356					0.041414810348555875
SISSGPIQK	9	Unmodified	_SISSGPIQK_					0	0	0		ENSG00000006611|ENST00000005226|USH1C;nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C	ENSG00000006611|ENST00000005226|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C	nc|ENSG00000006611|Q9Y6N9-4|USH1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.75860595703125	2	458.758549	915.502546	-0.0063521	-2.9141E-06	0.30129	0.00013822	0.29494	0.00013531	458.7586236103471	22.398	0.92627	22.299	21.945	22.871	-0.099028					104	33	4	0	0	0	0.0019475	3	3137	3093;3137;3188		110.67	48.102	1	2095400			42878	364;12559	24755	24756	52358;52359;52360	52359					0.041414810348555875
SISSGPIQK	9	Unmodified	_SISSGPIQK_					0	0	0		ENSG00000006611|ENST00000005226|USH1C;nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C	ENSG00000006611|ENST00000005226|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C	nc|ENSG00000006611|Q9Y6N9-4|USH1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7586364746094	2	458.758549	915.502546	-0.045299	-2.0781E-05	0.27401	0.0001257	0.22871	0.00010492	458.75862930299024	22.385	0.92152	22.34	21.977	22.898	-0.044867					98	31	4	0	0	0	0.0010463	3	3118	3074;3118;3163		122.18	50.257	1	2027600			42879	364;12559	24755	24756	52361;52362;52363	52362					0.041414810348555875
SISSGPIQK	9	Unmodified	_SISSGPIQK_					0	0	0		ENSG00000006611|ENST00000005226|USH1C;nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C	ENSG00000006611|ENST00000005226|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C	nc|ENSG00000006611|Q9Y6N9-4|USH1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2483215332031	2	458.758549	915.502546	0.12544	5.7547E-05	-0.27626	-0.00012674	-0.15082	-6.9192E-05	458.7583996196191	23.156	0.80669	23.111	22.898	23.705	-0.044867					59	28	3	0	0	0	0.24289	1	3303	3303		18.146	1.0335	1	157340			42880	364;12559	24755	24756	52364	52364					0.041414810348555875
SISSPQPGK	9	Unmodified	_SISSPQPGK_					0	0	0		nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.9162902832031	2	450.742899	899.471246	-0.020284	-9.143E-06	-0.28589	-0.00012886	-0.30617	-0.000138	450.7428659368452	17.617	1.0189	17.5	16.909	17.928	-0.11739					58	35	3	0	0	0	0.21538	1	1723	1723		26.268	11.43	1	134620			42881	3967	24756	24757	52365	52365					0.017489080007635494
SISSPQPGK	9	Unmodified	_SISSPQPGK_					0	0	0		nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.9161682128906	2	450.742899	899.471246	0.16345	7.3673E-05	-0.72319	-0.00032597	-0.55974	-0.0002523	450.7426695477014	17.566	1.1431	17.506	16.859	18.002	-0.060429					49	40	2	0	0	0	0.23235	1	1711	1711		21.537	7.6309	1	126590			42882	3967	24756	24757	52366	52366					0.017489080007635494
SISSTWNQT	9	Unmodified	_SISSTWNQT_					0	0	0		nc|ENSG00000130997|Q7Z5Q5-3|POLN;ENST00000515357.5_1_4:2158125-2230958:-|nuORF;ENSG00000130997|ENST00000511885|POLN;ENST00000510344.1_1_4:2158487-2160929:-|nuORF	nc|ENSG00000130997|Q7Z5Q5-3|POLN	nc|ENSG00000130997|Q7Z5Q5-3|POLN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2802734375	2	512.240721	1022.46689	0.075964	3.8912E-05	-0.8806	-0.00045108	-0.80463	-0.00041217	512.2400974785702	76.613	0.13158	76.667	76.592	76.724	0.053413					6	4	2	0	0	0	0.25202	1	19715	19715		6.7232	0	1	57509			42883	3534	24757	24758	52367	52367					-0.04344601212812904
SISVRELL	8	Unmodified	_SISVRELL_					0	0	0			REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.75830078125	2	458.776742	915.538931	-0.14641	-6.717E-05	-0.71161	-0.00032647	-0.85802	-0.00039364	458.77628172870493	23.151	0.57347	23.151	22.875	23.448	0					34	19	2	0	0	0	0.33293	1	3345	3345		14.838	4.7643	1	126450	+		42884	15054	24758	24759	52368	52368					0.07778357931567825
SISVSSEQLAQ	11	Unmodified	_SISVSSEQLAQ_					0	0	0		ENSG00000133742|ENST00000523022|CA1	ENSG00000133742|ENST00000523022|CA1	ENSG00000133742|ENST00000523022|CA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.31103515625	2	574.793318	1147.57208	0.47402	0.00027246	-0.9756	-0.00056077	-0.50158	-0.0002883	575.2968721699807	54.016	0.14152	54.016	53.884	54.026	0					6	4	2	0	0	0	0.36943	1	12797	12797		15.248	0.8431	1	76179			42885	3727	24759	24760	52369	52369					0.0041989519295384525
SITAERLIF	9	Unmodified	_SITAERLIF_					0	0	0		ENSG00000177169|ENST00000321867|ULK1;ENST00000540647.5_1_12:132402872-132405903:+|nuORF;ENST00000540568.1_1_12:132404621-132404756:+|nuORF	ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2808837890625	2	525.303124	1048.5917	0.30919	0.00016242	-1.8733	-0.00098403	-1.5641	-0.00082161	525.8031835768228	41.044	0.42957	41.044	40.796	41.225	0					27	15	2	0	0	0	0.25066	1	8859	8859		7.2892	0	1	253140			42886	6967	24760	24761	52370	52370					0.06934315994362805
SITCCFTCF	9	Unmodified	_SITCCFTCF_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2855834960938	2	512.700474	1023.3864	0.73326	0.00037594	0.6606	0.00033869	1.3939	0.00071463	512.7006356335678	60.654	0.16378	60.644	60.596	60.759	-0.0094566					8	5	2	0	0	0	0.25879	1	14832	14832		0.52476	0	1	157740			42887	6576	24761	24762	52371	52371					-0.12436245123376466
SITCDYSG	8	Unmodified	_SITCDYSG_					0	0	0			REV__nc|ENSG00000103994|Q9H2Y7|ZNF106	REV__nc|ENSG00000103994|Q9H2Y7|ZNF106	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.9293212890625	2	423.170918	844.327284	-0.45147	-0.00019105	-0.071179	-3.0121E-05	-0.52265	-0.00022117	423.17082976370193	104.48	0.17072	104.48	104.39	104.56	0					28	22	2	0	0	0	0.34414	1	27749	27749		2.0598	0	1	82198	+		42888	14390	24762	24763	52372	52372					-0.10110681821686285
SITEPRGML	9	Unmodified	_SITEPRGML_					0	0	0		ENST00000308275.7_2_15:76225210-76225336:+|nuORF	ENST00000308275.7_2_15:76225210-76225336:+|nuORF	ENST00000308275.7_2_15:76225210-76225336:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7971496582031	2	502.265684	1002.51682	-0.91556	-0.00045985	-3.2914	-0.0016532	-4.207	-0.002113	502.2656989083566	34.672	0.44969	34.672	34.418	34.868	0					37	15	3	0	0	0	0.25526	1	6785	6785		7.9102	1.187	1	181330			42889	9288	24763	24764	52373	52373					0.015658101914937106
SITERRKK	8	Unmodified	_SITERRKK_					0	0	0		ENSG00000182836|ENST00000377801|PLCXD3	ENSG00000182836|ENST00000377801|PLCXD3	ENSG00000182836|ENST00000377801|PLCXD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3127136230469	2	509.311815	1016.60908	0.56779	0.00028918	-0.18147	-9.2422E-05	0.38633	0.00019676	509.3116219661852	84.273	1.315	84.273	83.859	85.174	0					121	51	4	0	0	0	0.43043	1	21998	21998		12.532	12.532	1	2485700			42890	7324	24764	24765	52374	52374					0.10143656320042282
SITGFFQRK	9	Unmodified	_SITGFFQRK_					0	0	0		ENSG00000077514|ENST00000263681|POLD3;ENST00000530163.1_1_11:74340223-74351808:+|nuORF;nc|ENSG00000077514|Q15054-3|POLD3;nc|ENSG00000077514|Q15054-2|POLD3	ENSG00000077514|ENST00000263681|POLD3	ENSG00000077514|ENST00000263681|POLD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.3015747070312	2	542.300916	1082.58728	0.14056	7.6223E-05	-0.80682	-0.00043754	-0.66626	-0.00036131	542.300154546132	39.483	1.0101	39.483	39.04	40.05	0					81	36	3	0	0	0	0.088443	1	8352	8352		39.95	1.335	1	615220			42891	1092	24765	24766	52375	52375					0.04928851571457926
SITHCRSSF	9	Unmodified	_SITHCRSSF_					0	0	0		ENST00000405233.5_1_2:271872-272329:+|nuORF;ENST00000453390.5_1_2:271872-277301:+|nuORF	ENST00000405233.5_1_2:271872-272329:+|nuORF	ENST00000405233.5_1_2:271872-272329:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2871704101562	2	519.245283	1036.47601	0.61934	0.00032159	1.0405	0.00054026	1.6598	0.00086185	519.2458996645162	64.087	0.87384	64.087	63.665	64.539	0					47	31	2	0	0	0	0.25622	1	16021	16021		7.2892	0	1	369060			42892	10216	24766	24767	52376	52376					-0.040765311281120375
SITKERKV	8	Unmodified	_SITKERKV_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2611999511719	2	480.795466	959.57638	0.45993	0.00022113	-1.8348	-0.00088215	-1.3748	-0.00066102	480.79464664422375	21.255	0.14136	21.145	21.063	21.205	-0.11003					8	4	2	0	0	0	0.3366	1	2796	2796		12.532	0	1	78591			42893	4195	24767	24768	52377	52377					0.09497449197192509
SITRLSKWLRR	11	Unmodified	_SITRLSKWLRR_					0	0	0			REV__nc|ENSG00000173421|Q8IYA8-3|IHO1	REV__nc|ENSG00000173421|Q8IYA8-3|IHO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.75604248046875	3	472.624643	1414.8521	0.25681	0.00012137	-0.72736	-0.00034377	-0.47055	-0.00022239	472.95855596678734	30.132	0.50805	30.159	29.901	30.409	0.027948					26	17	2	0	0	0	0.33348	1	5552	5552		0.073264	0	1	83172	+		42894	23087	24768	24769	52378	52378					0.16126901045049635
SITSRLFQF	9	Unmodified	_SITSRLFQF_					0	0	0		ENSG00000197993|ENST00000355265|KEL;ENST00000479768.6_1_7:142643674-142659293:-|nuORF	ENSG00000197993|ENST00000355265|KEL	ENSG00000197993|ENST00000355265|KEL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3214111328125	2	549.800749	1097.58694	0.42335	0.00023276	0.10971	6.0318E-05	0.53306	0.00029308	549.8003525403184	51.595	0.53968	51.605	51.373	51.913	0.0095634					33	19	2	0	0	0	0.2451	1	12129	12129		6.7232	0	1	578130			42895	8022	24769	24770	52379	52379					0.042054318516193234
SITSVFITK	9	Unmodified	_SITSVFITK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2923278808594	2	498.292225	994.569897	0.40765	0.00020313	-0.11216	-5.5891E-05	0.29549	0.00014724	498.2920930215086	49.989	1.1433	49.989	49.675	50.818	0					76	41	2	0	0	0	3.4202E-05	2	11555	11555;11605		151.48	88.907	1	6929100			42896	7854	24770	24771	52380;52381	52380					0.07239511245802532
SITSVFITK	9	Unmodified	_SITSVFITK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2923889160156	2	498.292225	994.569897	0.6455	0.00032165	-0.32227	-0.00016058	0.32323	0.00016106	498.29200153495555	49.96	1.1514	50.004	49.695	50.846	0.044891					82	42	2	0	0	0	0.0013924	2	11586	11539;11586		117.76	55.188	1	6472700			42897	7854	24770	24771	52382;52383	52383					0.07239511245802532
SITSVFITK	9	Unmodified	_SITSVFITK_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.29229736328125	2	498.292225	994.569897	0.62552	0.00031169	-0.26732	-0.0001332	0.3582	0.00017849	498.2920292645052	49.996	1.2022	50.017	49.67	50.872	0.020691					85	44	2	0	0	0	0.0013924	2	11586	11537;11586		117.76	51.614	1	6684700			42898	7854	24770	24771	52384;52385	52385					0.07239511245802532
SITTRLRPKV	10	Unmodified	_SITTRLRPKV_					0	0	0			REV__nc|ENSG00000105953|Q02218-2|OGDH	REV__nc|ENSG00000105953|Q02218-2|OGDH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.3749389648438	2	585.869497	1169.72444	0.27486	0.00016103	-0.24466	-0.00014334	0.0302	1.7693E-05	585.8695221640049	25.06	0.51201	25.06	24.872	25.384	0					26	17	3	0	0	0	0.32054	1	4011	4011		3.2813	0.28607	1	109870	+		42899	14495	24771	24772	52386	52386					0.1463676045102602
SITTVQIQK	9	Unmodified	_SITTVQIQK_					0	0	0		ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3006286621094	2	509.300581	1016.58661	0.32996	0.00016805	0.3865	0.00019684	0.71646	0.00036489	509.3004830737272	32.855	0.70306	32.855	32.633	33.336	0					52	24	3	0	0	0	0.067563	1	6304	6304		66.457	26.507	1	611390			42900	10060	24772	24773	52387	52387					0.07898012131761334
SITTVQIQK	9	Unmodified	_SITTVQIQK_					0	0	0		ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3009033203125	2	509.300581	1016.58661	0.31907	0.0001625	0.77103	0.00039269	1.0901	0.00055519	509.300653488169	32.759	0.66481	32.814	32.59	33.255	0.055309					59	23	3	0	0	0	0.00092088	1	6265	6265		121.53	52.429	1	593390			42901	10060	24772	24773	52388	52388					0.07898012131761334
SITTVQIQK	9	Unmodified	_SITTVQIQK_					0	0	0		ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	ENST00000394091.5_1_3:101177876-101232004:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.30072021484375	2	509.300581	1016.58661	0.27163	0.00013834	0.15024	7.6515E-05	0.42186	0.00021486	509.3005233903261	32.762	0.46529	32.816	32.603	33.069	0.054371					38	16	3	0	0	0	0.001957	1	6267	6267		110.55	50.479	1	563220			42902	10060	24772	24773	52389	52389					0.07898012131761334
SITVRSKL	8	Unmodified	_SITVRSKL_					0	0	0			REV__nc|ENSG00000224373|P01825|IGHV4-59	REV__nc|ENSG00000224373|P01825|IGHV4-59	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2776794433594	2	452.284734	902.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.035	1	70.101	69.601	70.601	0.066048								0	0	0	0.36169	1	17724	17724		9.3474	0	1		+		42903	23187	24773	24774	52390	52390					0.09974064168477526
SIVATTKSKKD	11	Unmodified	_SIVATTKSKKD_					0	0	0		nc|ENSG00000129534|Q6P0N0-2|MIS18BP1;ENSG00000129534|ENST00000310806|MIS18BP1	nc|ENSG00000129534|Q6P0N0-2|MIS18BP1	nc|ENSG00000129534|Q6P0N0-2|MIS18BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3426513671875	2	589.342978	1176.6714	0.34019	0.00020049	-0.28396	-0.00016735	0.056229	3.3138E-05	589.3427954654742	91.93	1.249	91.93	91.419	92.668	0					142	91	2	0	0	0	0.45108	1	24426	24426		4.5289	0.58447	1	202860			42904	3430	24774	24775	52391	52391					0.09013337877695449
SIVHIYNRWR	10	Unmodified	_SIVHIYNRWR_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;ENST00000463645.1_1_2:132491378-132509159:+|nuORF	ENSG00000172915|ENST00000379939|NBEA;ENST00000463645.1_1_2:132491378-132509159:+|nuORF	ENSG00000172915|ENST00000379939|NBEA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.55291748046875	3	448.582556	1342.72584	0.42385	0.00019013	0.97071	0.00043544	1.3946	0.00062557	448.5830797833221	29.447	0.38901	29.447	29.244	29.633	0					31	13	3	0	0	0	0.32137	1	5293	5293		1.7423	0.28716	1	98160			42905	6673;10768	24775	24776	52392	52392					0.06818394539777728
SIVKESILK	9	Unmodified	_SIVKESILK_					0	0	0		ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8211975097656	2	508.82115	1015.62775	0.49886	0.00025383	-0.15046	-7.6556E-05	0.3484	0.00017728	508.8209883123764	32.592	0.67587	32.592	32.415	33.091	0					41	23	3	0	0	0	0.0066776	1	6239	6239		84.522	38.782	1	506070			42906	10522	24776	24777	52393	52393					0.12055773171232431
SIVKESILK	9	Unmodified	_SIVKESILK_					0	0	0		ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.82110595703125	2	508.82115	1015.62775	0.49057	0.00024961	-0.18791	-9.5614E-05	0.30265	0.000154	508.8209280468162	32.516	0.57477	32.571	32.344	32.919	0.055309					42	20	3	0	0	0	0.018042	1	6229	6229		67.081	25.125	1	416260			42907	10522	24776	24777	52394	52394					0.12055773171232431
SIVKESILK	9	Unmodified	_SIVKESILK_					0	0	0		ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	ENST00000436367.5_1_6:16658088-16761588:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8212585449219	2	508.82115	1015.62775	0.29928	0.00015228	0.012883	6.5553E-06	0.31217	0.00015884	508.82108664523395	32.55	0.59161	32.605	32.364	32.956	0.054371					43	21	3	0	0	0	0.0066776	1	6211	6211		84.522	34.968	1	458260			42908	10522	24776	24777	52395	52395					0.12055773171232431
SIVLDRPAY	9	Unmodified	_SIVLDRPAY_					0	0	0			REV__ENST00000357375.4_1_19:51919519-51920835:-|nuORF	REV__ENST00000357375.4_1_19:51919519-51920835:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8340454101562	2	517.287474	1032.5604	0.34837	0.00018021	0.44465	0.00023001	0.79302	0.00041022	517.2878077774726	43.297	0.51086	43.297	42.93	43.441	0					20	18	2	0	0	0	0.24311	1	9404	9404		16.942	0	1	269340	+		42909	16121	24777	24778	52396	52396					0.04541742960282136
SIVLPPQL	8	Unmodified	_SIVLPPQL_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.7708740234375	2	433.770929	865.527304	-0.053876	-2.337E-05	0.89642	0.00038884	0.84254	0.00036547	433.77083925688726	74.405	1.9652	74.457	73.95	75.915	0.052361					93	70	2	0	0	0	0.3671	1	19125	19125		23.148	0	1	1103000	+		42910	23008	24778	24779	52397	52397					0.08916160908222537
SIVLQAPRFVM	11	Unmodified	_SIVLQAPRFVM_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8600463867188	2	630.860283	1259.70601	0.61954	0.00039084	0.67154	0.00042365	1.2911	0.00081449	630.8600905460387	83.905	0.86528	83.905	83.298	84.163	0					84	33	3	0	0	0	0.46475	1	21850	21850		2.7352	0.23671	1	1030800			42911	3530	24779	24780	52398	52398					0.08654882484779591
SIVLQAPRFVM	11	Unmodified	_SIVLQAPRFVM_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.860107421875	2	630.860283	1259.70601	0.54665	0.00034486	-0.40531	-0.00025569	0.14134	8.9165E-05	630.8595479668895	85.924	2.6627	85.924	84.946	87.609	0					263	106	4	0	0	0	0.46475	1	22443	22443		2.7352	2.7352	1	2656100			42912	3530	24779	24780	52399	52399					0.08654882484779591
SIVLQAPRFVM	11	Unmodified	_SIVLQAPRFVM_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.8606567382812	2	630.860283	1259.70601	0.45741	0.00028856	0.44312	0.00027955	0.90053	0.00056811	630.8601252478331	83.901	1.4313	83.978	83.54	84.971	0.077095					105	57	3	0	0	0	0.44523	1	22056	22056		5.2969	0.39987	1	789680			42913	3530	24779	24780	52400	52400					0.08654882484779591
SIVSKYSLG	9	Unmodified	_SIVSKYSLG_					0	0	0			REV__IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	REV__IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.8066711425781	2	477.26875	952.522947	0.28951	0.00013818	-0.32663	-0.00015589	-0.037117	-1.7715E-05	477.26846552031935	29.534	0.73174	29.546	29.272	30.004	0.012266					38	24	2	0	0	0	0.24289	1	5342	5342		18.146	0	1	116540	+		42914	18708	24780	24781	52401	52401					0.044786516946601296
SIVSLYKKLEM	11	Unmodified	_SIVSLYKKLEM_					0	0	0		ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2231750488281	3	437.584463	1309.73156	-0.077757	-3.4025E-05	0.87082	0.00038106	0.79307	0.00034703	437.5851870666269	17.948	0.35434	17.948	17.746	18.1	0					24	11	3	0	0	0	0.3331	1	1815	1815		2.2527	0.66045	1	28305			42915	7173	24781	24782	52402	52402					0.08908312216567538
SIVTKYEPVKY	11	Unmodified	_SIVTKYEPVKY_					0	0	0			REV__VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant	REV__VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.9151306152344	3	442.914978	1325.7231	-0.11867	-5.256E-05	0.61188	0.00027101	0.49321	0.00021845	442.91526261069333	27.913	0.80315	27.913	27.643	28.446	0					57	27	3	0	0	0	0.33334	1	4897	4897		1.2148	0.10508	1	394190	+		42916	18784	24782	24783	52403	52403					0.07327081571588678
SIVWYKDERL	10	Unmodified	_SIVWYKDERL_					0	0	0		ENST00000507059.5_1_5:180043993-180056331:-|nuORF;nc|ENSG00000037280|P35916-3|FLT4;nc|ENSG00000037280|P35916-1|FLT4;ENSG00000037280|ENST00000261937|FLT4	ENST00000507059.5_1_5:180043993-180056331:-|nuORF	ENST00000507059.5_1_5:180043993-180056331:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.2471923828125	3	436.903072	1307.68739	-1.5673	-0.00068474	2.0717	0.00090513	0.50445	0.0002204	436.9041036998216	34.824	0.52037	34.899	34.631	35.151	0.075306					27	18	2	0	0	0	0.31911	1	6916	6916		6.6304	0	1	98134			42917	584	24783	24784	52404	52404					0.045850441146058074
SIVYELAIIVY	11	Unmodified	_SIVYELAIIVY_					0	0	0		ENSG00000142494|ENST00000270570|SLC47A1;nc|ENSG00000142494|Q96FL8-3|SLC47A1;ENST00000497548.5_1_17:19459198-19470111:+|nuORF;ENST00000495425.6_1_17:19458825-19480863:+|nuORF	ENSG00000142494|ENST00000270570|SLC47A1	ENSG00000142494|ENST00000270570|SLC47A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.234375	3	428.247957	1281.72204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.395	1	62.395	61.895	62.895	0								0	0	0	0.3674	1	15391	15391		4.4062	0.28952	1				42918	4444	24784	24785	52405	52405					0.09244867202687601
SIVYLKPEAS	10	Unmodified	_SIVYLKPEAS_					0	0	0		ENSG00000279111|ENST00000623167|OR10X1	ENSG00000279111|ENST00000623167|OR10X1	ENSG00000279111|ENST00000623167|OR10X1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8301391601562	2	553.808239	1105.60193	0.53322	0.0002953	3.8493	0.0021318	4.3826	0.0024271	553.8122349873398	83.691	0.10988	83.768	83.716	83.826	0.077095					6	4	2	0	0	0	0.3144	1	21887	21887		13.042	0	1	64371			42919	8749	24785	24786	52406	52406					0.05334878928942999
SIWARLKV	8	Unmodified	_SIWARLKV_					0	0	0			REV__ENST00000355451.7_1_7:44424176-44424434:-|nuORF	REV__ENST00000355451.7_1_7:44424176-44424434:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7921447753906	2	486.803094	971.591636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.657	1	81.657	81.157	82.157	0								0	0	0	0.36336	1	21281	21281		8.5933	0	1		+		42920	20189	24786	24787	52407	52407					0.10470360785029698
SIWDETLYK	9	Unmodified	_SIWDETLYK_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENST00000474757.1_1_X:55757854-55777647:+|nuORF	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.7901611328125	2	577.790047	1153.56554	0.20779	0.00012006	2.2083	0.0012759	2.416	0.001396	577.7901868277266	59.087	0.96801	59.087	58.682	59.65	0					78	33	3	0	0	0	0.026579	1	14339	14339		61.602	29.296	1	623280			42921	1226	24787	24788	52408	52408					-0.0050999796776523
SIWDETLYK	9	Unmodified	_SIWDETLYK_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENST00000474757.1_1_X:55757854-55777647:+|nuORF	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.7901000976562	2	577.790047	1153.56554	0.35244	0.00020364	1.7592	0.0010164	2.1116	0.0012201	577.7901004423343	58.967	0.90045	59.058	58.56	59.46	0.091305					71	31	3	0	0	0	0.03069	1	14353	14353		60.074	20.117	1	722380			42922	1226	24787	24788	52409	52409					-0.0050999796776523
SIWDETLYK	9	Unmodified	_SIWDETLYK_					0	0	0		ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENST00000474757.1_1_X:55757854-55777647:+|nuORF	ENSG00000155876|ENST00000380527|RRAGA	ENSG00000155876|ENST00000380527|RRAGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.7902221679688	2	577.790047	1153.56554	0.36698	0.00021204	1.8884	0.0010911	2.2554	0.0013032	577.7901409977679	59.092	0.79422	59.077	58.746	59.54	-0.014267					60	27	3	0	0	0	0.0028542	1	14371	14371		103.42	57.398	1	709320			42923	1226	24787	24788	52410	52410					-0.0050999796776523
SIWHQVSLQL	10	Unmodified	_SIWHQVSLQL_					0	0	0		ENST00000532345.1_1_11:62556832-62556898:+|nuORF	ENST00000532345.1_1_11:62556832-62556898:+|nuORF	ENST00000532345.1_1_11:62556832-62556898:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.22406005859375	3	404.224146	1209.65061	0.33298	0.0001346	-0.62195	-0.00025141	-0.28897	-0.00011681	404.2236908448397	50.668	0.65969	50.713	50.403	51.063	0.044891					59	23	3	0	0	0	0.33753	1	11757	11757		14.957	2.1012	1	885810			42924	11638	24788	24789	52411	52411					0.054167922887017994
SIWLFVIWF	9	Unmodified	_SIWLFVIWF_					0	0	0			REV__ENST00000578529.5_1_18:259269-260310:-|nuORF	REV__ENST00000578529.5_1_18:259269-260310:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.22772216796875	3	404.226827	1209.65865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.551	1	59.646	59.146	60.146	0.095093								0	0	0	0.24264	1	14502	14502		8.7454	5.9021	1		+		42925	22466	24789	24790	52412	52412					0.06220971276115961
SIWLIVFGVVM	11	Unmodified	_SIWLIVFGVVM_					0	0	0		nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2279357910156	3	421.91051	1262.7097	0.26851	0.00011329	1.9432	0.00081984	2.2117	0.00093312	421.9114856721932	50.427	0.57703	50.427	50.077	50.654	0					37	20	4	0	0	0	0.32293	1	11743	11743		10.315	2.8382	1	351910			42926	3460	24790	24791	52413	52413					0.08885552258675489
SIWLIVFGVVM	11	Unmodified	_SIWLIVFGVVM_					0	0	0		nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.22784423828125	3	421.91051	1262.7097	0.65079	0.00027458	1.5447	0.00065171	2.1954	0.00092628	421.9114132247905	50.358	0.49406	50.403	50.16	50.654	0.044891					35	17	3	0	0	0	0.32293	1	11715	11715		10.315	7.243	1	353520			42927	3460	24790	24791	52414	52414					0.08885552258675489
SIWLIVFGVVM	11	Unmodified	_SIWLIVFGVVM_					0	0	0		nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2279052734375	3	421.91051	1262.7097	0.72236	0.00030477	1.5151	0.00063925	2.2375	0.00094402	421.9114189101551	50.427	0.51418	50.448	50.226	50.74	0.020695					42	18	3	0	0	0	0.30217	1	11698	11698		10.315	6.1986	1	264670			42928	3460	24790	24791	52415	52415					0.08885552258675489
SIWLRWKKP	9	Unmodified	_SIWLRWKKP_					0	0	0		ENSG00000103742|ENST00000352385|IGDCC4;ENST00000559327.1_1_15:65676349-65688574:-|nuORF;nc|ENSG00000103742|Q8TDY8-2|IGDCC4	ENSG00000103742|ENST00000352385|IGDCC4	ENSG00000103742|ENST00000352385|IGDCC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2278137207031	3	405.244992	1212.71315	0.03499	1.4179E-05	1.6916	0.00068549	1.7265	0.00069967	405.2459546303262	44.724	1.1071	44.793	44.349	45.456	0.068569					65	39	3	0	0	0	0.25879	1	9987	9987		2.7352	0	1	190710			42929	1851	24791	24792	52416	52416					0.1152998314753404
SIWLSRQK	8	Unmodified	_SIWLSRQK_					0	0	0		ENST00000453466.1_1_7:102939135-102952715:+|nuORF	ENST00000453466.1_1_7:102939135-102952715:+|nuORF	ENST00000453466.1_1_7:102939135-102952715:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.28167724609375	2	509.295633	1016.57671	0.42748	0.00021771	-0.84297	-0.00042932	-0.41549	-0.00021161	509.2950733209752	30.097	0.49954	30.097	29.86	30.359	0					33	16	3	0	0	0	0.42758	1	5449	5449		13.508	2.684	1	291570			42930	10671	24792	24793	52417	52417					0.06908868917037125
SIWVIFYNI	9	Unmodified	_SIWVIFYNI_					0	0	0		ENSG00000157224|ENST00000496677|CLDN12	ENSG00000157224|ENST00000496677|CLDN12	ENSG00000157224|ENST00000496677|CLDN12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3346557617188	2	577.815867	1153.61718	0.294	0.00016988	-2.5366	-0.0014657	-2.2426	-0.0012958	577.8142966398669	70.237	0.50616	70.215	70.018	70.524	-0.022087					30	17	2	0	0	0	0.22596	1	17751	17751		15.847	4.2069	1	266570			42931	5291	24793	24794	52418	52418					0.04651790516800247
SIWVKTRIW	9	Unmodified	_SIWVKTRIW_					0	0	0		ENST00000479540.5_1_20:62201547-62202346:-|nuORF;ENST00000370082.1_1_20:62201547-62204491:-|nuORF	ENST00000479540.5_1_20:62201547-62202346:-|nuORF	ENST00000479540.5_1_20:62201547-62202346:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.832275390625	2	594.848033	1187.68151	1.099	0.00065371	3.0247	0.0017992	4.1237	0.002453	594.8498718815441	33.883	0.33233	33.95	33.76	34.092	0.06636					21	11	2	0	0	0	0.25622	1	6625	6625		7.2892	0	1	96378			42932	9790	24794	24795	52419	52419					0.09517990393578657
SIWVKTRIW	9	Unmodified	_SIWVKTRIW_					0	0	0		ENST00000479540.5_1_20:62201547-62202346:-|nuORF;ENST00000370082.1_1_20:62201547-62204491:-|nuORF	ENST00000479540.5_1_20:62201547-62202346:-|nuORF	ENST00000479540.5_1_20:62201547-62202346:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	594.848033	1187.68151	0.26801	0.00015943	4.5506	0.0027069	4.8186	0.0028663	594.8507164684572	33.836	0.27724	33.903	33.77	34.047	0.0667	-0.057923	0.00074719	NaN	7.2892	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112800			42933	9790	24794	24795							0.09517990393578657
SIWYRSWGPL	10	Unmodified	_SIWYRSWGPL_					0	0	0			REV__nc|ENSG00000126259|Q6UWL6-2|KIRREL2	REV__nc|ENSG00000126259|Q6UWL6-2|KIRREL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5700988769531	3	422.220624	1263.64004	0.10387	4.3857E-05	-0.95255	-0.00040219	-0.84868	-0.00035833	422.2202699599734	29.705	0.53745	29.705	29.551	30.088	0					30	18	2	0	0	0	0.31942	1	5438	5438		3.5871	0	1	116720	+		42934	15306	24795	24796	52420	52420					0.018768096342910212
SIYASVQTF	9	Unmodified	_SIYASVQTF_					0	0	0			REV__ENSG00000139610|ENST00000293636|CELA1	REV__ENSG00000139610|ENST00000293636|CELA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.7824401855469	2	508.258382	1014.50221	0.37549	0.00019084	0.35742	0.00018166	0.73291	0.00037251	508.2585163471913	53.578	0.84139	53.568	53.278	54.119	-0.0096054					65	31	3	0	0	0	0.22596	1	12727	12727		10.824	0.75	1	1024700	+		42935	15993	24796	24797	52421	52421					-0.0044593868499305245
SIYDSKRQSGK	11	Unmodified	_SIYDSKRQSGK_					0	0	0		nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-3|ADAR	nc|ENSG00000160710|P55265-3|ADAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.55780029296875	3	423.557964	1267.65206	-0.38862	-0.0001646	0.31889	0.00013507	-0.069735	-2.9537E-05	423.55782240568215	13.509	0.52536	13.442	13.275	13.801	-0.067496					45	18	3	0	0	0	0.40826	1	456	456		8.2864	2.7631	1	193040			42936	5478	24797	24798	52422	52422					0.028943815867933154
SIYETPSMGL	10	Unmodified	_SIYETPSMGL_					0	0	0		ENST00000466199.1_1_7:2406190-2411546:+|nuORF;ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B;ENST00000468250.1_1_7:2406190-2406681:+|nuORF	ENST00000466199.1_1_7:2406190-2411546:+|nuORF	ENST00000466199.1_1_7:2406190-2411546:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.777099609375	2	549.262807	1096.51106	0.73387	0.00040309	-0.36582	-0.00020093	0.36805	0.00020216	549.2625845476748	45.667	0.7723	45.667	45.366	46.138	0					65	27	3	0	0	0	0.2593	1	10166	10166		25.399	0.40835	1	763700			42937	2065	24798	24799	52423	52423					-0.033333331107996855
SIYFPYVLK	9	Unmodified	_SIYFPYVLK_					0	0	0		ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.3187866210938	2	565.318243	1128.62193	0.26724	0.00015108	0.88227	0.00049876	1.1495	0.00064984	565.3184863320333	67.933	0.50323	67.933	67.647	68.15	0					44	17	4	0	0	0	0.079752	1	17077	17077		41.84	20.093	1	1064300			42938	7787	24799	24800	52424	52424					0.06276674659557102
SIYFPYVLK	9	Unmodified	_SIYFPYVLK_					0	0	0		ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.3185424804688	2	565.318243	1128.62193	0.25689	0.00014522	0.84768	0.00047921	1.1046	0.00062443	565.3184523167757	67.934	0.53121	67.917	67.644	68.175	-0.016296					45	18	3	0	0	0	0.063853	2	17068	17068;17105		47.749	13.646	1	1011200			42939	7787	24799	24800	52425;52426	52425					0.06276674659557102
SIYGEILSF	9	Unmodified	_SIYGEILSF_					0	0	0			REV__ENST00000447976.1_3_22:30681611-30689721:-|nuORF	REV__ENST00000447976.1_3_22:30681611-30689721:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2479248046875	2	514.768583	1027.52261	0.32377	0.00016667	-3.7543	-0.0019326	-3.4306	-0.0017659	514.7680886743166	75.271	0.32494	75.271	75.178	75.503	0					16	11	2	0	0	0	0.1659	1	19393	19393		36.044	0	1	111400	+		42940	19159	24800	24801	52427	52427					0.009952319748208538
SIYGEILSF	9	Unmodified	_SIYGEILSF_					0	0	0			REV__ENST00000447976.1_3_22:30681611-30689721:-|nuORF	REV__ENST00000447976.1_3_22:30681611-30689721:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.247802734375	2	514.768583	1027.52261	0.35959	0.0001851	-4.0571	-0.0020884	-3.6975	-0.0019033	515.2668398589193	75.466	0.69293	75.434	75.084	75.777	-0.031479					33	25	2	0	0	0	0.17611	1	19340	19340		34.102	10.954	1	165720	+		42941	19159	24800	24801	52428	52428					0.009952319748208538
SIYKRIIDSPK	11	Unmodified	_SIYKRIIDSPK_					0	0	0			REV__ENSG00000204186|ENST00000374423|ZDBF2	REV__ENSG00000204186|ENST00000374423|ZDBF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2637939453125	3	440.594238	1318.76089	0.34751	0.00015311	0.24278	0.00010697	0.59028	0.00026007	440.5943340960134	19.987	0.41473	19.931	19.705	20.119	-0.055693					23	14	2	0	0	0	0.3322	1	2351	2351		2.6312	0.19645	1	104800	+		42942	18925	24801	24802	52429	52429					0.11425592557088748
SIYPHGVTF	9	Unmodified	_SIYPHGVTF_					0	0	0		ENSG00000198734|ENST00000367797|F5;CON__Q28107	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.28118896484375	2	510.761092	1019.50763	0.33711	0.00017218	-0.17351	-8.8624E-05	0.1636	8.3558E-05	510.7610141250638	52.373	0.85693	52.373	52.049	52.906	0					54	30	3	0	0	0	0.22596	1	12440	12440		15.847	4.2069	1	1455400			42943	8114	24802	24803	52430	52430					-0.001342151025255589
SIYPHGVTF	9	Unmodified	_SIYPHGVTF_					0	0	0		ENSG00000198734|ENST00000367797|F5;CON__Q28107	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	510.761092	1019.50763	0.30134	0.00015391	-0.034831	-1.779E-05	0.26651	0.00013612	510.7611715420753	52.266	0.70646	52.317	52.06	52.767	0.050575	-0.079443	-1.1601E-05	NaN	15.847	43	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1228300			42944	8114	24802	24803							-0.001342151025255589
SIYPHGVTF	9	Unmodified	_SIYPHGVTF_					0	0	0		ENSG00000198734|ENST00000367797|F5;CON__Q28107	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	510.761092	1019.50763	0.11546	5.8972E-05	0.15621	7.9785E-05	0.27167	0.00013876	510.761222811177	52.5	0.70444	52.499	52.141	52.846	-0.00081253	0.10282	0.00018355	NaN	15.847	54	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1347500			42945	8114	24802	24803							-0.001342151025255589
SIYRGPSHTYK	11	Unmodified	_SIYRGPSHTYK_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.8946228027344	3	436.894688	1307.66223	-0.16191	-7.0738E-05	1.3259	0.0005793	1.164	0.00050856	436.894698554686	19.505	0.97939	19.505	19.066	20.045	0					160	34	6	0	0	0	0.072476	3	2273	2228;2273;2314		46.744	18.562	1	1034900			42946	1047	24803	24804	52431;52432;52433	52432					0.02070989312051097
SIYRGPSHTYK	11	Unmodified	_SIYRGPSHTYK_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.89459228515625	3	436.894688	1307.66223	0.029369	1.2831E-05	1.3202	0.0005768	1.3496	0.00058963	436.8946122096758	19.738	1.066	19.622	19.116	20.182	-0.11592					152	36	6	0	0	0	0.063741	3	2330	2284;2330;2373		49.269	24.114	1	1188500			42947	1047	24803	24804	52434;52435;52436	52435					0.02070989312051097
SIYRGPSHTYK	11	Unmodified	_SIYRGPSHTYK_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.8947448730469	3	436.894688	1307.66223	0.056086	2.4504E-05	1.2019	0.0005251	1.258	0.00054961	436.8945991479628	19.648	1.0689	19.593	19.08	20.149	-0.055691					157	37	6	0	0	0	0.26603	1	2339	2339		36.822	11.865	1	1220300			42948	1047	24803	24804	52437	52437					0.02070989312051097
SIYRPSKNLDK	11	Unmodified	_SIYRPSKNLDK_					0	0	0		ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.9137878417969	3	440.91386	1319.71975	0.27147	0.00011969	-0.43985	-0.00019394	-0.16839	-7.4244E-05	440.91362990547856	20.925	1.0883	20.925	20.371	21.459	0					103	37	4	0	0	0	0.30623	3	2672	2619;2672;2716		21.666	7.4953	1	687640			42949	1614	24804	24805	52438;52439;52440	52439					0.07267831517606282
SIYRPSKNLDK	11	Unmodified	_SIYRPSKNLDK_					0	0	0		ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.9136962890625	3	440.91386	1319.71975	0.33374	0.00014715	-0.47907	-0.00021123	-0.14533	-6.4079E-05	440.9136082057152	20.968	1.1028	20.915	20.355	21.457	-0.05291					115	38	4	0	0	0	0.16139	3	2696	2646;2696;2749		34.674	23.608	1	770760			42950	1614	24804	24805	52441;52442;52443	52442					0.07267831517606282
SIYRPSKNLDK	11	Unmodified	_SIYRPSKNLDK_					0	0	0		ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	440.91386	1319.71975	0.36692	0.00016178	-0.54259	-0.00023923	-0.17567	-7.7454E-05	440.91360929719394	21.083	0.90913	20.973	20.553	21.462	-0.11003	0.035757	-6.4108E-05	NaN	34.674	99	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	905580			42951	1614	24804	24805							0.07267831517606282
SIYSILLKK	9	Unmodified	_SIYSILLKK_					0	0	0			REV__ENSG00000171492|ENST00000337338|LRRC8D	REV__ENSG00000171492|ENST00000337338|LRRC8D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.8394775390625	2	532.839342	1063.66413	0.47561	0.00025342	0.099819	5.3188E-05	0.57543	0.00030661	532.8392893850502	43.312	0.8668	43.312	42.982	43.849	0					88	31	4	0	0	0	0.0024096	1	9517	9517		106.94	0	1	2923300	+		42952	17642	24805	24806	52444	52444					0.13484650067971415
SIYSILLKK	9	Unmodified	_SIYSILLKK_					0	0	0			REV__ENSG00000171492|ENST00000337338|LRRC8D	REV__ENSG00000171492|ENST00000337338|LRRC8D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.839599609375	2	532.839342	1063.66413	0.36803	0.0001961	0.1787	9.5221E-05	0.54673	0.00029132	532.8393429623644	43.067	0.94572	43.152	42.846	43.791	0.084446					95	34	4	0	0	0	0.0024096	1	9434	9434		106.94	0	1	3221500	+		42953	17642	24805	24806	52445	52445					0.13484650067971415
SIYSYLPAFK	10	Unmodified	_SIYSYLPAFK_					0	0	0		ENSG00000163754|ENST00000345003|GYG1;nc|ENSG00000163754|P46976-2|GYG1;nc|ENSG00000163754|P46976-3|GYG1	ENSG00000163754|ENST00000345003|GYG1	ENSG00000163754|ENST00000345003|GYG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.818115234375	2	594.818607	1187.62266	0.46535	0.0002768	-0.50446	-0.00030006	-0.039107	-2.3262E-05	594.818048102052	67.737	0.5988	67.737	67.398	67.997	0					50	20	3	0	0	0	0.0053869	2	17008	17008;17057		89.401	33.052	1	565120			42954	5726	24806	24807	52446;52447	52446					0.03635469308596839
SIYSYLPAFK	10	Unmodified	_SIYSYLPAFK_					0	0	0		ENSG00000163754|ENST00000345003|GYG1;nc|ENSG00000163754|P46976-2|GYG1;nc|ENSG00000163754|P46976-3|GYG1	ENSG00000163754|ENST00000345003|GYG1	ENSG00000163754|ENST00000345003|GYG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8186645507812	2	594.818607	1187.62266	0.60018	0.000357	-0.77921	-0.00046349	-0.17903	-0.00010649	594.8179514001441	67.597	0.75385	67.675	67.296	68.05	0.078041					61	26	3	0	0	0	0.02128	2	16972	16972;17024		70.332	26.56	1	471200			42955	5726	24806	24807	52448;52449	52448					0.03635469308596839
SIYSYLPAFK	10	Unmodified	_SIYSYLPAFK_					0	0	0		ENSG00000163754|ENST00000345003|GYG1;nc|ENSG00000163754|P46976-2|GYG1;nc|ENSG00000163754|P46976-3|GYG1	ENSG00000163754|ENST00000345003|GYG1	ENSG00000163754|ENST00000345003|GYG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8187866210938	2	594.818607	1187.62266	0.34603	0.00020582	-0.53481	-0.00031812	-0.18878	-0.00011229	594.8181234099171	67.757	0.77892	67.741	67.292	68.071	-0.016304					64	25	3	0	0	0	0.015324	2	16990	16990;17042		76.825	26.56	1	543140			42956	5726	24806	24807	52450;52451	52450					0.03635469308596839
SIYVDRQIF	9	Unmodified	_SIYVDRQIF_					0	0	0			REV__ENST00000394628.2_1_10:79492938-79493973:+|nuORF	REV__ENST00000394628.2_1_10:79492938-79493973:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.7484741210938	2	570.806031	1139.59751	0.12732	7.2673E-05	-1.4191	-0.00081001	-1.2917	-0.00073733	570.8053037999892	61.775	0.78226	61.775	61.51	62.292	0					71	28	4	0	0	0	0.21389	1	15342	15342		25.399	8.2864	1	1279700	+		42957	20623	24807	24808	52452	52452					0.0332941450603812
SIYVDRQIF	9	Unmodified	_SIYVDRQIF_					0	0	0			REV__ENST00000394628.2_1_10:79492938-79493973:+|nuORF	REV__ENST00000394628.2_1_10:79492938-79493973:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7484130859375	2	570.806031	1139.59751	-0.059283	-3.3839E-05	-1.5779	-0.00090066	-1.6372	-0.0009345	570.8051601601936	61.693	0.79993	61.79	61.507	62.307	0.096989					74	28	4	0	0	0	0.21389	1	15303	15303		25.399	13.159	1	1310800	+		42958	20623	24807	24808	52453	52453					0.0332941450603812
SIYVKFPLL	9	Unmodified	_SIYVKFPLL_					0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.330322265625	2	540.328611	1078.64267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.324	1	87.411	86.911	87.911	0.08709								0	0	0	0.23091	1	23014	23014		12.532	4.6214	1				42959	868	24808	24809	52454	52454					0.1064926503922834
SIYVKFPLL	9	Unmodified	_SIYVKFPLL_					0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3197021484375	2	540.328611	1078.64267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.615	1	96.686	96.186	97.186	0.070465								0	0	0	0.2489	1	25830	25830		6.7232	0.51738	1				42960	868	24808	24809	52455	52455					0.1064926503922834
SIYVKFPLL	9	Unmodified	_SIYVKFPLL_					0	0	0		ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.33056640625	2	540.328611	1078.64267	0.66071	0.000357	3.1196	0.0016856	3.7804	0.0020426	540.32972446075	87.346	0.26807	87.34	87.171	87.439	-0.0056229					25	12	3	0	0	0	0.30166	1	23021	23021		8.5933	3.3626	1	134680			42961	868	24808	24809	52456	52456					0.1064926503922834
SIYWRMKKFGK	11	Unmodified	_SIYWRMKKFGK_					0	0	0		ENST00000368644.5_1_10:131969896-131973276:+|nuORF	ENST00000368644.5_1_10:131969896-131973276:+|nuORF	ENST00000368644.5_1_10:131969896-131973276:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.9350280761719	3	481.93583	1442.78566	0.237	0.00011422	-1.908	-0.00091954	-1.671	-0.00080532	481.9348360328793	24.554	0.58726	24.481	24.234	24.821	-0.072557					42	19	3	0	0	0	0.46554	1	3785	3785		2.6312	0.19645	1	167300			42962	9762	24809	24810	52457	52457					0.08197949158784468
SIYWRMKKFGK	11	Unmodified	_SIYWRMKKFGK_					0	0	0		ENST00000368644.5_1_10:131969896-131973276:+|nuORF	ENST00000368644.5_1_10:131969896-131973276:+|nuORF	ENST00000368644.5_1_10:131969896-131973276:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.9352111816406	3	481.93583	1442.78566	0.094826	4.57E-05	-1.5695	-0.00075641	-1.4747	-0.00071071	481.9349845267642	24.507	0.42323	24.468	24.306	24.73	-0.038927					33	14	3	0	0	0	0.43198	1	3781	3781		7.0371	1.1689	1	155060			42963	9762	24809	24810	52458	52458					0.08197949158784468
SIYYVDVQK	9	Unmodified	_SIYYVDVQK_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.337646484375	2	557.792589	1113.57063	0.20473	0.0001142	1.1096	0.00061892	1.3143	0.00073312	557.7934105202854	42.428	0.33226	42.519	42.385	42.717	0.091362					19	11	2	0	0	0	0.1645	1	9202	9202		40.239	23.297	1	285120			42964	5464	24810	24811	52459	52459					0.01838305894852965
SIYYVDVQK	9	Unmodified	_SIYYVDVQK_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	557.792589	1113.57063	0.15388	8.5831E-05	1.5036	0.0008387	1.6575	0.00092453	557.7932357750551	42.717	0.38552	42.717	42.517	42.902	0	0.098989	0.00032744	NaN	33.445	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297740			42965	5464	24810	24811							0.01838305894852965
SIYYVDVQK	9	Unmodified	_SIYYVDVQK_					0	0	0		ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	ENSG00000160410|ENST00000291842|SHKBP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	557.792589	1113.57063	0.20535	0.00011454	1.0214	0.0005697	1.2267	0.00068425	558.2944408325748	42.533	0.32595	42.618	42.378	42.704	0.085201	3.7701E-07	-0.00021054	NaN	33.445	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279310			42966	5464	24810	24811							0.01838305894852965
SKAFSTCTAH	10	Unmodified	_SKAFSTCTAH_					0	0	0		ENSG00000186881|ENST00000334726|OR13F1	ENSG00000186881|ENST00000334726|OR13F1	ENSG00000186881|ENST00000334726|OR13F1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.2669067382812	2	526.745116	1051.47568	0.30483	0.00016057	4.0737	0.0021458	4.3785	0.0023064	526.7471389816137	15.797	0.48768	15.733	15.517	16.004	-0.064414					27	16	2	0	0	0	0.31926	1	1205	1205		5.7319	0	1	48321			42967	7652	24811	24812	52460	52460					-0.04799950847973378
SKALGRPTTL	10	Unmodified	_SKALGRPTTL_					0	0	0		ENSG00000135220|ENST00000251566|UGT2A3;nc|ENSG00000173610|P0DTE4-1|UGT2A1	ENSG00000135220|ENST00000251566|UGT2A3;nc|ENSG00000173610|P0DTE4-1|UGT2A1	ENSG00000135220|ENST00000251566|UGT2A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3284301757812	2	522.314023	1042.61349	0.55676	0.0002908	-3.4351	-0.0017942	-2.8783	-0.0015034	522.3129208950403	89.336	0.63142	89.336	89.131	89.762	0					53	36	2	0	0	0	0.37751	1	23674	23674		7.609	0.88579	1	187510			42968	3853;12841	24812	24813	52461	52461					0.0938912074293512
SKCCQNSL	8	Unmodified	_SKCCQNSL_					0	0	0		ENST00000529230.5_1_11:46832627-46837749:-|nuORF	ENST00000529230.5_1_11:46832627-46837749:-|nuORF	ENST00000529230.5_1_11:46832627-46837749:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.6925964355469	2	441.694038	881.373522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.624	1	72.678	72.178	73.178	0.053833								0	0	0	0.35663	1	18514	18514		11.64	3.047	1				42969	11597	24813	24814	52462	52462					-0.07190940191253503
SKDEKILHIK	10	Unmodified	_SKDEKILHIK_					0	0	0		nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH	nc|ENSG00000105953|Q02218-2|OGDH	nc|ENSG00000105953|Q02218-2|OGDH	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.8635864257812	2	605.861338	1209.70812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.183	1	92.272	91.772	92.772	0.089195								0	0	0	0.38104	1	24502	24502		3.5965	1.9439	1				42970	2039	24814	24815	52463	52463					0.11165634494273036
SKDFTNLLI	9	Unmodified	_SKDFTNLLI_					0	0	0			REV__nc|ENSG00000135903|P23760-8|PAX3	REV__nc|ENSG00000135903|P23760-8|PAX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.310791015625	2	525.795132	1049.57571	0.51069	0.00026852	0.93569	0.00049198	1.4464	0.0007605	525.7956315131884	73.178	0.37354	73.178	72.961	73.335	0					21	12	2	0	0	0	0.24636	1	18719	18719		16.149	0	1	218980	+		42971	22999	24815	24816	52464	52464					0.052906097574805244
SKDFTPIVVL	10	Unmodified	_SKDFTPIVVL_					0	0	0			REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF	REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2914428710938	2	559.826432	1117.63831	0.0016246	9.0951E-07	0.39931	0.00022354	0.40093	0.00022445	559.8263559909888	61.372	0.77192	61.362	61.133	61.905	-0.0094566					44	27	2	0	0	0	0.31515	1	15212	15212		8.1555	0	1	637360	+		42972	16785	24816	24817	52465	52465					0.0841975582568466
SKDISTKGPEK	11	Unmodified	_SKDISTKGPEK_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;ENST00000556591.1_1_12:96948025-96958672:+|nuORF	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.32373046875	2	595.324785	1188.63502	0.39215	0.00023346	-1.6786	-0.00099932	-1.2865	-0.00076586	595.3237225264103	16.675	0.32106	16.612	16.382	16.703	-0.062532					18	10	2	0	0	0	0.46655	1	1402	1402		2.4985	0	1	68851			42973	7759	24817	24818	52466	52466					0.048244609809898975
SKDKMWYLAK	10	Unmodified	_SKDKMWYLAK_					0	0	0		ENSG00000082515|ENST00000523037|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	ENSG00000082515|ENST00000523037|MRPL22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2067565917969	3	423.893519	1268.65873	-0.14236	-6.0345E-05	0.49264	0.00020883	0.35028	0.00014848	424.2276577049999	24.211	0.2539	24.211	24.058	24.312	0					11	8	2	0	0	0	0.31942	1	3636	3636		3.5871	1.5011	1	19729			42974	1204	24818	24819	52467	52467					0.03514603213807277
SKDSTPHCY	9	Unmodified	_SKDSTPHCY_					0	0	0			REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2218017578125	2	519.221474	1036.42839	0.23219	0.00012056	0.17344	9.0052E-05	0.40563	0.00021061	519.2216253869829	69.595	1.0397	69.595	69.285	70.325	0					132	37	6	0	0	0	0.31038	1	17663	17663		7.2892	1.0834	1	2833200	+		42975	15495	24819	24820	52468	52468					-0.08836230118981803
SKEHRKLS	8	Unmodified	_SKEHRKLS_					0	0	0			REV__ZNF878|p.K482Nfs*20|1|0.06|ENSG00000257446|chr19:12043955-12043956|-/AATCTCAGCA|frameshift_variant	REV__ZNF878|p.K482Nfs*20|1|0.06|ENSG00000257446|chr19:12043955-12043956|-/AATCTCAGCA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.7831726074219	2	492.78289	983.551228	0.035454	1.7471E-05	0.1961	9.6636E-05	0.23156	0.00011411	492.78286330808623	14.156	0.51936	14.052	13.903	14.422	-0.10466					31	17	3	0	0	0	0.23736	1	644	644		37.974	3.8716	1	137240	+		42976	19262	24820	24821	52469	52469					0.05879394394617066
SKEHRKLS	8	Unmodified	_SKEHRKLS_					0	0	0			REV__ZNF878|p.K482Nfs*20|1|0.06|ENSG00000257446|chr19:12043955-12043956|-/AATCTCAGCA|frameshift_variant	REV__ZNF878|p.K482Nfs*20|1|0.06|ENSG00000257446|chr19:12043955-12043956|-/AATCTCAGCA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.7834167480469	2	492.78289	983.551228	6.1147E-05	3.0132E-08	0.16223	7.9943E-05	0.16229	7.9974E-05	492.78295695721886	14.119	0.45632	14.053	13.917	14.373	-0.066068					28	15	2	0	0	0	0.27124	1	643	643		34.102	3.8776	1	149250	+		42977	19262	24820	24821	52470	52470					0.05879394394617066
SKEHRKLS	8	Unmodified	_SKEHRKLS_					0	0	0			REV__ZNF878|p.K482Nfs*20|1|0.06|ENSG00000257446|chr19:12043955-12043956|-/AATCTCAGCA|frameshift_variant	REV__ZNF878|p.K482Nfs*20|1|0.06|ENSG00000257446|chr19:12043955-12043956|-/AATCTCAGCA|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	492.78289	983.551228	0.035454	1.7471E-05	0.1961	9.6636E-05	0.23156	0.00011411	492.78286330808623	14.156	0.51936	14.052	13.903	14.422	-0.10466	-0.013772	0.00010202	NaN	37.974	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137240	+		42978	19262	24820	24821							0.05879394394617066
SKEILARH	8	Unmodified	_SKEILARH_					0	0	0			REV__ENST00000569150.1_1_16:25251139-25264321:-|nuORF	REV__ENST00000569150.1_1_16:25251139-25264321:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.2798767089844	2	477.279983	952.545414	0.14734	7.0321E-05	-0.040839	-1.9492E-05	0.1065	5.0829E-05	477.2799806190788	22.924	0.6282	22.88	22.649	23.277	-0.044867					53	22	4	0	0	0	0.45307	1	3372	3372		4.756	0.81161	1	361350	+		42979	16703	24821	24822	52471	52471					0.06724295882941078
SKEILLEMF	9	Unmodified	_SKEILLEMF_					0	0	0		ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8169555664062	2	555.299193	1108.58383	0.19941	0.00011073	-2.4906	-0.001383	-2.2912	-0.0012723	555.7971937567606	99.281	0.082047	99.274	99.216	99.298	-0.006897					12	9	2	0	0	0	0.30166	1	26584	26584		8.5933	0	1	93290			42980	7532	24822	24823	52472	52472					0.03388420682586002
SKEKQYLH	8	Unmodified	_SKEKQYLH_					0	0	0		ENSG00000169992|ENST00000302926|NLGN2	ENSG00000169992|ENST00000302926|NLGN2	ENSG00000169992|ENST00000302926|NLGN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2958984375	2	516.777274	1031.53999	-0.1778	-9.1886E-05	2.3378	0.0012081	2.16	0.0011162	516.7780366636616	12.835	0.2642	12.767	12.64	12.905	-0.067495					12	8	2	0	0	0	0.34272	1	274	274		7.9102	0	1	13464			42981	6412	24823	24824	52473	52473					0.02548572300474916
SKERSQVK	8	Unmodified	_SKERSQVK_					0	0	0			REV__ENSG00000196967|ENST00000292841|ZNF585A	REV__ENSG00000196967|ENST00000292841|ZNF585A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7618408203125	2	481.274898	960.535243	-0.078782	-3.7916E-05	-0.17864	-8.5975E-05	-0.25742	-0.00012389	481.27481844704226	12.957	0.34007	12.857	12.729	13.069	-0.099291					24	11	3	0	0	0	0.44145	1	300	300		8.7454	1.1365	1	224810	+		42982	18701	24824	24825	52474	52474					0.05339688157721412
SKEVLIAAAL	10	Unmodified	_SKEVLIAAAL_					0	0	0			REV__ENSG00000149289|ENST00000278590|ZC3H12C	REV__ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.79052734375	2	507.813325	1013.6121	0.44018	0.00022353	-2.2357	-0.0011353	-1.7955	-0.0009118	507.81271933850064	59.259	0.31632	59.244	59.171	59.488	-0.014267					13	10	2	0	0	0	0.3156	1	14420	14420		10.824	0	1	63040	+		42983	16457	24825	24826	52475	52475					0.10583486654184071
SKFCEYER	8	Unmodified	_SKFCEYER_					0	0	0		ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.239990234375	2	531.239667	1060.46478	0.52178	0.00027719	0.69003	0.00036657	1.2118	0.00064376	531.239808596818	63.958	0.56835	64.051	63.822	64.391	0.09288					56	20	4	0	0	0	0.4354	1	15875	15875		10.824	1.4408	1	603600			42984	4737	24826	24827	52476	52476					-0.06303353222278929
SKFCEYER	8	Unmodified	_SKFCEYER_					0	0	0		ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2406005859375	2	531.239667	1060.46478	0.70488	0.00037446	0.44914	0.0002386	1.154	0.00061306	531.2398764128673	64.025	0.6489	64.015	63.794	64.443	-0.0095291					55	23	4	0	0	0	0.43302	1	15889	15889		11.64	1.5664	1	627020			42985	4737	24826	24827	52477	52477					-0.06303353222278929
SKFVLRSRDN	10	Unmodified	_SKFVLRSRDN_					0	0	0			REV__ENST00000434570.6_1_22:20052429-20053083:+|nuORF	REV__ENST00000434570.6_1_22:20052429-20053083:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.3562622070312	2	611.338561	1220.66257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.413	1	82.413	81.913	82.913	0								0	0	0	0.37807	1	21514	21514		2.9952	0	1		+		42986	20985	24827	24828	52478	52478					0.06106409031895055
SKFVLRSRDN	10	Unmodified	_SKFVLRSRDN_					0	0	0			REV__ENST00000434570.6_1_22:20052429-20053083:+|nuORF	REV__ENST00000434570.6_1_22:20052429-20053083:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.356201171875	2	611.338561	1220.66257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.387	1	82.367	81.867	82.867	-0.020584								0	0	0	0.37157	1	21488	21488		5.7319	0.43497	1		+		42987	20985	24827	24828	52479	52479					0.06106409031895055
SKGAGTKGVLV	11	Unmodified	_SKGAGTKGVLV_					0	0	0			REV__ENSG00000133574|ENST00000255945|GIMAP4	REV__ENSG00000133574|ENST00000255945|GIMAP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.779541015625	2	508.808574	1015.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.035	1	11.967	11.467	12.467	-0.06806								0	0	0	0.38146	1	6	6		0.96228	0.16864	1		+		42988	15627	24828	24829	52480	52480					0.09541718368677721
SKGEWEKRSK	10	Unmodified	_SKGEWEKRSK_					0	0	0		ENSG00000178175|ENST00000318442|ZNF366	ENSG00000178175|ENST00000318442|ZNF366	ENSG00000178175|ENST00000318442|ZNF366	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.52886962890625	3	412.222805	1233.64658	-0.10676	-4.4009E-05	3.4012	0.0014021	3.2945	0.0013581	412.5572133008252	18.327	0.3138	18.269	18.059	18.372	-0.058174					15	10	3	0	0	0	0.32054	1	1903	1903		1.5923	0	1	18642			42989	7041	24829	24830	52481	52481					0.03910702794973986
SKGNPTTI	8	Unmodified	_SKGNPTTI_					0	0	0			REV__ENST00000547809.5_1_12:105570964-105626916:-|nuORF	REV__ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2423400878906	2	409.224342	816.434132	-0.35673	-0.00014598	0.67876	0.00027776	0.32203	0.00013178	409.22455272032136	14.942	0.61286	14.942	14.676	15.289	0					30	21	2	0	0	0	0.34272	1	969	969		7.9102	0	1	91676	+		42990	15783	24830	24831	52482	52482					0.018572364549982012
SKGVLRFG	8	Unmodified	_SKGVLRFG_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	REV__nc|ENSG00000164796|Q7Z407-3|CSMD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.25897216796875	2	432.25852	862.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.534	1	98.534	98.034	99.034	0								0	0	0	0.37724	1	26366	26366		2.3027	0.24298	1		+		42991	17179	24831	24832	52483	52483					0.06573525825513116
SKHHGGSRSGH	11	Unmodified	_SKHHGGSRSGH_					0	0	0		ENSG00000163660|ENST00000295926|CCNL1;ENST00000476744.5_1_3:156866032-156867533:-|nuORF;ENST00000470121.5_1_3:156866032-156869342:-|nuORF;ENST00000474539.5_1_3:156866032-156868247:-|nuORF	ENSG00000163660|ENST00000295926|CCNL1	ENSG00000163660|ENST00000295926|CCNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.8347778320312	2	573.779202	1145.54385	-0.11904	-6.8302E-05	0.0048245	2.7682E-06	-0.11421	-6.5534E-05	573.7791546548467	12.695	0.23313	12.695	12.582	12.815	0					11	7	2	0	0	0	0.33352	1	199	199		0	0	1	16248			42992	5718	24832	24833	52484	52484					-0.023099451530924853
SKHHGGSRSGH	11	Unmodified	_SKHHGGSRSGH_					0	0	0		ENSG00000163660|ENST00000295926|CCNL1;ENST00000476744.5_1_3:156866032-156867533:-|nuORF;ENST00000470121.5_1_3:156866032-156869342:-|nuORF;ENST00000474539.5_1_3:156866032-156868247:-|nuORF	ENSG00000163660|ENST00000295926|CCNL1	ENSG00000163660|ENST00000295926|CCNL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	573.779202	1145.54385	-0.19081	-0.00010948	-0.090529	-5.1944E-05	-0.28134	-0.00016143	573.7788874661001	12.739	0.27125	12.672	12.491	12.763	-0.067496	-0.011644	-9.3791E-05	NaN	0	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17261			42993	5718	24832	24833							-0.023099451530924853
SKHRKNPIEK	10	Unmodified	_SKHRKNPIEK_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.8610229492188	2	618.862203	1235.70985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.285	1	94.367	93.867	94.867	0.082779								0	0	0	0.38166	1	25143	25143		1.4819	0	1				42994	3985	24833	24834	52485	52485					0.10142688302880742
SKIKNLYIGFA	11	Unmodified	_SKIKNLYIGFA_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.3423461914062	2	627.366256	1252.71796	0.40571	0.00025453	-1.831	-0.0011487	-1.4253	-0.00089418	627.3658028816305	64.812	0.89462	64.812	64.424	65.319	0					66	32	3	0	0	0	0.32736	1	16077	16077		12.241	0	1	317130	+		42995	15885	24834	24835	52486	52486					0.10170822499617316
SKIKNLYIGFA	11	Unmodified	_SKIKNLYIGFA_					0	0	0			REV__ENSG00000137812|ENST00000399668|KNL1	REV__ENSG00000137812|ENST00000399668|KNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.342529296875	2	627.366256	1252.71796	0.15857	9.9481E-05	-1.3993	-0.00087785	-1.2407	-0.00077837	627.3661550128481	64.65	0.8822	64.743	64.445	65.327	0.09288					68	32	3	0	0	0	0.32736	1	16035	16035		12.241	2.1667	1	287330	+		42996	15885	24834	24835	52487	52487					0.10170822499617316
SKKCNRLEE	9	Unmodified	_SKKCNRLEE_					0	0	0		ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP;ENST00000538548.5_1_12:132198725-132271134:+|nuORF	ENSG00000061936|ENST00000261674|SFSWAP	ENSG00000061936|ENST00000261674|SFSWAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3045654296875	2	553.784773	1105.55499	-0.04834	-2.677E-05	-3.25	-0.0017998	-3.2984	-0.0018266	553.7845698894246	14.185	0.53419	14.119	13.949	14.483	-0.066067					34	18	3	0	0	0	0.25938	1	614	614		4.3292	0.73274	1	33722			42997	762	24835	24836	52488	52488					0.006436961061581314
SKKDSEKAKI	10	Unmodified	_SKKDSEKAKI_					0	0	0		nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2;ENST00000460467.1_1_3:17051216-17052412:+|nuORF;nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3300170898438	2	567.32987	1132.64519	0.39199	0.00022239	-0.35593	-0.00020193	0.036058	2.0457E-05	567.3297854831022	82.276	3.0038	82.276	81.434	84.437	0					554	116	6	0	0	0	0.38773	2	21555	21555;21602		5.7319	5.7319	1	21102000			42998	5147	24836	24837	52489;52490	52489					0.08417068706239661
SKKDSEKAKI	10	Unmodified	_SKKDSEKAKI_					0	0	0		nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2;ENST00000460467.1_1_3:17051216-17052412:+|nuORF;nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.329345703125	2	567.32987	1132.64519	0.37457	0.0002125	-0.30141	-0.000171	0.073151	4.1501E-05	567.329755597451	82.159	4.0309	82.228	80.932	84.963	0.068993					665	170	5	0	0	0	0.37454	2	21550	21506;21550		8.1555	5.7319	1	20842000			42999	5147	24836	24837	52491;52492	52492					0.08417068706239661
SKKDSEKAKI	10	Unmodified	_SKKDSEKAKI_					0	0	0		nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2;ENST00000460467.1_1_3:17051216-17052412:+|nuORF;nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	nc|ENSG00000154822|Q9UPR0-3|PLCL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3291015625	2	567.32987	1132.64519	0.37678	0.00021376	-0.29089	-0.00016503	0.085891	4.8729E-05	567.3297156430638	82.255	3.9465	82.231	81.019	84.966	-0.02404					641	165	5	0	0	0	0.37454	3	21587	21538;21587;21632		8.1555	5.7319	1	21005000			43000	5147	24836	24837	52493;52494;52495	52494					0.08417068706239661
SKKEQRAK	8	Unmodified	_SKKEQRAK_					0	0	0		CON__Q2KIG3	CON__Q2KIG3	CON__Q2KIG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7909851074219	2	487.790715	973.566878	0.35475	0.00017304	0.41003	0.00020001	0.76478	0.00037305	487.79074011191256	71.976	1.8152	71.976	71.375	73.191	0					145	65	4	0	0	0	0.45431	1	18465	18465		4.3292	0.73274	1	999710		+	43001	227	24837	24838	52496	52496					0.0790368091164737
SKKEQRAK	8	Unmodified	_SKKEQRAK_					0	0	0		CON__Q2KIG3	CON__Q2KIG3	CON__Q2KIG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7909240722656	2	487.790715	973.566878	0.36554	0.00017831	0.46078	0.00022476	0.82632	0.00040307	487.7907373002169	71.909	1.9917	71.966	71.238	73.23	0.056572					162	72	3	0	0	0	0.44734	2	18450	18450;18550		6.7232	3.5965	1	950180		+	43002	227	24837	24838	52497;52498	52497					0.0790368091164737
SKKFRLCLF	9	Unmodified	_SKKFRLCLF_					0	0	0			REV__ENSG00000180773|ENST00000326402|SLC36A4	REV__ENSG00000180773|ENST00000326402|SLC36A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.3323974609375	2	571.331162	1140.64777	0.34205	0.00019542	-0.0496	-2.8338E-05	0.29245	0.00016709	571.331115474436	92.374	0.8179	92.463	92.153	92.971	0.089195					81	60	2	0	0	0	0.32733	1	24582	24582		4.756	1.8668	1	165670	+		43003	18117	24838	24839	52499	52499					0.0830724563018066
SKKFRLCLF	9	Unmodified	_SKKFRLCLF_					0	0	0			REV__ENSG00000180773|ENST00000326402|SLC36A4	REV__ENSG00000180773|ENST00000326402|SLC36A4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	571.331162	1140.64777	0.17783	0.0001016	0.22723	0.00012982	0.40506	0.00023142	571.3313645761497	92.465	0.62683	92.465	92.218	92.845	0	-3.9411E-06	0.00024485	NaN	4.756	67	47	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122810	+		43004	18117	24838	24839							0.0830724563018066
SKKFRLCLF	9	Unmodified	_SKKFRLCLF_					0	0	0			REV__ENSG00000180773|ENST00000326402|SLC36A4	REV__ENSG00000180773|ENST00000326402|SLC36A4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	571.331162	1140.64777	0.34205	0.00019542	-0.0496	-2.8338E-05	0.29245	0.00016709	571.331115474436	92.374	0.8179	92.463	92.153	92.971	0.089195	-0.0018972	-7.1468E-05	NaN	4.756	81	60	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165670	+		43005	18117	24838	24839							0.0830724563018066
SKKHNTLT	8	Unmodified	_SKKHNTLT_					0	0	0			REV__nc|ENSG00000171566|O43660-2|PLRG1	REV__nc|ENSG00000171566|O43660-2|PLRG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.256103515625	2	464.764166	927.513779	-0.13838	-6.4313E-05	-0.19613	-9.1155E-05	-0.33451	-0.00015547	464.764031319196	26.512	0.68729	26.512	26.042	26.729	0					44	23	2	0	0	0	0.41097	1	4304	4304		18.135	0	1	151810	+		43006	17652	24839	24840	52500	52500					0.047123031289856954
SKKHNTLT	8	Unmodified	_SKKHNTLT_					0	0	0			REV__nc|ENSG00000171566|O43660-2|PLRG1	REV__nc|ENSG00000171566|O43660-2|PLRG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.256103515625	2	464.764166	927.513779	-0.13838	-6.4313E-05	-0.19613	-9.1155E-05	-0.33451	-0.00015547	464.764031319196	26.512	0.68729	26.512	26.042	26.729	0					44	23	2	0	0	0	0.3366	1	4304	4304		18.135	0	1	151810	+		43007	17652	24839	24840	52501	52501					0.047123031289856954
SKKHRRLAQ	9	Unmodified	_SKKHRRLAQ_					0	0	0		ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.343994140625	2	562.343981	1122.67341	0.26073	0.00014662	-0.83537	-0.00046976	-0.57463	-0.00032314	562.343553068934	80.466	2.1466	80.466	79.411	81.558	0					378	89	5	0	0	0	0.31038	2	21072	21072;21204		7.2892	0.56607	1	16129000			43008	2246	24840	24841	52502;52503	52502					0.11697856196815337
SKKHRRLAQ	9	Unmodified	_SKKHRRLAQ_					0	0	0		ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3436279296875	2	562.343981	1122.67341	0.20628	0.000116	-0.76416	-0.00042972	-0.55788	-0.00031372	562.3435873199479	80.295	3.1196	80.36	79.444	82.564	0.065094					520	132	5	0	0	0	0.31038	1	21137	21137		7.2892	0.56607	1	13068000			43009	2246	24840	24841	52504	52504					0.11697856196815337
SKKHRRLAQ	9	Unmodified	_SKKHRRLAQ_					0	0	0		ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3436279296875	2	562.343981	1122.67341	0.40698	0.00022886	-0.71299	-0.00040095	-0.30601	-0.00017208	562.343473781436	82.892	0.58913	82.872	82.517	83.106	-0.020584					61	22	3	0	0	0	0.34536	1	21672	21672		2.0598	0.21551	1	1108300			43010	2246	24840	24841	52505	52505					0.11697856196815337
SKKKTSAG	8	Unmodified	_SKKKTSAG_					0	0	0			REV__ENSG00000172985|ENST00000309415|SH3RF3	REV__ENSG00000172985|ENST00000309415|SH3RF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.739501953125	2	403.74016	805.465767	-0.1661	-6.706E-05	-2.013	-0.00081275	-2.1791	-0.00087981	403.73961743779836	75.567	0.91736	75.619	75.187	76.104	0.052361					104	33	5	0	0	0	0.46517	1	19405	19405		0.6015	0	1	1663900	+		43011	17752	24841	24842	52506	52506					0.055252292089562616
SKKKTSAG	8	Unmodified	_SKKKTSAG_					0	0	0			REV__ENSG00000172985|ENST00000309415|SH3RF3	REV__ENSG00000172985|ENST00000309415|SH3RF3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	403.74016	805.465767	-0.29231	-0.00011802	-1.3983	-0.00056453	-1.6906	-0.00068255	403.7396613167368	75.616	0.93283	75.616	75.235	76.168	0	-0.0017971	7.3689E-05	NaN	0.6015	77	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1438000	+		43012	17752	24841	24842							0.055252292089562616
SKKKTSAG	8	Unmodified	_SKKKTSAG_					0	0	0			REV__ENSG00000172985|ENST00000309415|SH3RF3	REV__ENSG00000172985|ENST00000309415|SH3RF3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	403.74016	805.465767	-0.06057	-2.4455E-05	-1.5096	-0.00060947	-1.5701	-0.00063392	403.73957299699106	75.649	0.90305	75.617	75.286	76.19	-0.031479	-0.00013028	-1.6189E-05	NaN	0.6015	73	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1675500	+		43013	17752	24841	24842							0.055252292089562616
SKKRVSRYKS	10	Unmodified	_SKKRVSRYKS_					0	0	0			REV__ENSG00000203963|ENST00000684719|C1orf141	REV__ENSG00000203963|ENST00000684719|C1orf141	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8692016601562	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.86	1	111.86	111.36	112.36	0								0	0	0	0.38166	1	29086	29086		1.4819	0	1		+		43014	18911	24842	24843	52507	52507					0.11614974819917734
SKKRVSRYKS	10	Unmodified	_SKKRVSRYKS_					0	0	0			REV__ENSG00000203963|ENST00000684719|C1orf141	REV__ENSG00000203963|ENST00000684719|C1orf141	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8862915039062	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.84	1	102.86	102.36	103.36	0.016685								0	0	0	0.37807	1	27347	27347		2.9952	0	1		+		43015	18911	24842	24843	52508	52508					0.11614974819917734
SKKRVSRYKS	10	Unmodified	_SKKRVSRYKS_					0	0	0			REV__ENSG00000203963|ENST00000684719|C1orf141	REV__ENSG00000203963|ENST00000684719|C1orf141	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8702392578125	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.81	1	111.8	111.3	112.3	-0.015625								0	0	0	0.38166	1	29087	29087		1.4819	0	1		+		43016	18911	24842	24843	52509	52509					0.11614974819917734
SKKSKCVAKLF	11	Unmodified	_SKKSKCVAKLF_					0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.868896484375	2	619.868108	1237.72166	0.04266	2.6444E-05	3.0477	0.0018892	3.0903	0.0019156	620.3724641141405	94.171	0.25029	94.258	94.092	94.343	0.086678					39	18	3	0	0	0	0.45108	1	25099	25099		4.5289	1.2476	1	178870	+		43017	14881	24843	24844	52510	52510					0.11231169001848684
SKKSKKHKRS	10	Unmodified	_SKKSKKHKRS_					0	0	0			REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1	REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.3781127929688	2	607.37802	1212.74149	0.52891	0.00032125	0.30418	0.00018475	0.83309	0.000506	607.3776793331327	89.125	0.81831	89.216	88.83	89.648	0.090569					112	43	3	0	0	0	0.39227	1	23541	23541		4.897	0	1	714180	+		43018	16512	24844	24845	52511	52511					0.14362681056832116
SKKSKKHKRS	10	Unmodified	_SKKSKKHKRS_					0	0	0			REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1	REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.3783569335938	2	607.37802	1212.74149	0.41035	0.00024923	0.54967	0.00033386	0.96002	0.00058309	607.3777190056928	89.1	2.029	89.099	87.936	89.965	-0.00080872					189	114	3	0	0	0	0.39227	1	23671	23671		4.897	0	1	693120	+		43019	16512	24844	24845	52512	52512					0.14362681056832116
SKKSPPKLLVD	11	Unmodified	_SKKSPPKLLVD_					0	0	0			REV__nc|ENSG00000184058|O43435-2|TBX1	REV__nc|ENSG00000184058|O43435-2|TBX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3706665039062	2	606.371538	1210.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.464	1	86.548	86.048	87.048	0.084251								0	0	0	0.35909	1	22750	22750		7.609	1.4032	1		+		43020	23134	24845	24846	52513	52513					0.13158805154057518
SKKTNYLVM	9	Unmodified	_SKKTNYLVM_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3362426757812	2	542.296985	1082.57942	0.6325	0.000343	-1.683	-0.00091269	-1.0505	-0.00056968	542.2961148992604	95.488	0.19035	95.485	95.398	95.588	-0.0038223					29	19	2	0	0	0	0.25706	1	25527	25527		6.7232	1.4925	1	88200			43021	576	24846	24847	52514	52514					0.04142956259670427
SKKTNYLVM	9	Unmodified	_SKKTNYLVM_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	542.296985	1082.57942	0.25878	0.00014034	-0.79134	-0.00042914	-0.53256	-0.0002888	542.2967016392545	95.492	0.30421	95.492	95.344	95.648	0	-0.0152	0.00072459	NaN	6.7232	63	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65904			43022	576	24846	24847							0.04142956259670427
SKKVHLKLESS	11	Unmodified	_SKKVHLKLESS_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.3828125	2	628.372069	1254.72959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.866	1	82.845	82.345	83.345	-0.020584								0	0	0	0.33831	1	21637	21637		10.8	3.6978	1				43023	7291	24847	24848	52515	52515					0.11241019522981333
SKKWTVMKMKK	11	Unmodified	_SKKWTVMKMKK_					0	0	0		ENST00000295321.8_1_2:128262310-128262487:-|nuORF	ENST00000295321.8_1_2:128262310-128262487:-|nuORF	ENST00000295321.8_1_2:128262310-128262487:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.22882080078125	3	465.605204	1393.79378	0.26454	0.00012317	-0.18504	-8.6155E-05	0.079504	3.7017E-05	465.9394548922457	23.709	0.45909	23.67	23.45	23.909	-0.038927					24	15	2	0	0	0	0.3325	1	3592	3592		0.32927	0	1	64228			43024	9172	24848	24849	52516	52516					0.11263760083897978
SKLDHISRPP	10	Unmodified	_SKLDHISRPP_					0	0	0			REV__ENSG00000105085|ENST00000263390|MED26	REV__ENSG00000105085|ENST00000263390|MED26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.2661743164062	2	575.32238	1148.63021	0.1738	9.9992E-05	-0.008742	-5.0295E-06	0.16506	9.4962E-05	575.3223171080662	39.104	0.52376	39.197	38.974	39.497	0.09267					28	18	2	0	0	0	0.31642	1	8293	8293		10.8	2.0541	1	268440	+		43025	14436	24849	24850	52517	52517					0.06183621628883884
SKLDWESF	8	Unmodified	_SKLDWESF_					0	0	0		ENSG00000153774|ENST00000283882|CFDP1;ENST00000562602.1_1_16:75335772-75339061:-|nuORF;ENST00000564793.1_1_16:75327852-75396798:-|nuORF;ENST00000570103.5_1_16:75327852-75340352:-|nuORF	ENSG00000153774|ENST00000283882|CFDP1	ENSG00000153774|ENST00000283882|CFDP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2974548339844	2	506.242732	1010.47091	0.17985	9.1047E-05	0.86221	0.00043649	1.0421	0.00052753	506.2431667174392	61.179	0.48723	61.169	61.016	61.504	-0.0094566					28	17	2	0	0	0	0.31934	1	15040	15040		24.674	3.8027	1	834820			43026	5084	24850	24851	52518	52518					-0.033905117191011414
SKLIKKNKQ	9	Unmodified	_SKLIKKNKQ_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-3|KMT2E	REV__nc|ENSG00000005483|Q8IZD2-3|KMT2E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.6942138671875	2	543.853316	1085.69208	0.36347	0.00019767	-0.40071	-0.00021793	-0.037249	-2.0258E-05	543.8529684601657	22.217	0.28624	22.217	22.045	22.331	0					13	9	2	0	0	0	0.26257	1	3051	3051		0.52476	0.52476	1	39138	+		43027	13345	24851	24852	52519	52519					0.152659730480309
SKLIKKNKQ	9	Unmodified	_SKLIKKNKQ_					0	0	0			REV__nc|ENSG00000005483|Q8IZD2-3|KMT2E	REV__nc|ENSG00000005483|Q8IZD2-3|KMT2E	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	543.853316	1085.69208	0.5022	0.00027312	-0.2754	-0.00014978	0.2268	0.00012335	543.8529076148571	22.249	0.29133	22.149	22.017	22.308	-0.10034	-0.060157	2.3693E-05	NaN	0.52476	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46811	+		43028	13345	24851	24852							0.152659730480309
SKLNQTAALI	10	Unmodified	_SKLNQTAALI_					0	0	0			REV__ENSG00000183160|ENST00000392806|TMEM119	REV__ENSG00000183160|ENST00000392806|TMEM119	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.761474609375	2	529.813856	1057.61316	0.26222	0.00013893	-0.11275	-5.9739E-05	0.14946	7.9188E-05	529.8135821032513	25.061	0.64962	25.005	24.6	25.25	-0.055931					34	22	2	0	0	0	0.31691	1	3964	3964		9.3831	0	1	164340	+		43029	18243	24852	24853	52520	52520					0.0866570102307378
SKLQRDVSL	9	Unmodified	_SKLQRDVSL_					0	0	0		nc|ENSG00000235109|Q96LW9-2|ZSCAN31;ENSG00000235109|ENST00000344279|ZSCAN31	nc|ENSG00000235109|Q96LW9-2|ZSCAN31	nc|ENSG00000235109|Q96LW9-2|ZSCAN31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3036499023438	2	523.303655	1044.59276	0.47418	0.00024814	-0.28709	-0.00015024	0.18709	9.7905E-05	523.3033531685685	90.626	0.9565	90.716	90.077	91.033	0.090675					168	73	3	0	0	0	0.28225	1	24073	24073		11.495	0.6952	1	517510			43030	8492	24853	24854	52521	52521					0.07224530363282611
SKLQRDVSL	9	Unmodified	_SKLQRDVSL_					0	0	0		nc|ENSG00000235109|Q96LW9-2|ZSCAN31;ENSG00000235109|ENST00000344279|ZSCAN31	nc|ENSG00000235109|Q96LW9-2|ZSCAN31	nc|ENSG00000235109|Q96LW9-2|ZSCAN31	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	523.303655	1044.59276	0.51383	0.00026889	-0.39666	-0.00020757	0.11717	6.1316E-05	523.3033777429401	90.734	1.1932	90.734	89.904	91.097	0	-0.0060964	-4.6189E-05	NaN	11.495	199	94	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	511450			43031	8492	24853	24854							0.07224530363282611
SKLQRDVSL	9	Unmodified	_SKLQRDVSL_					0	0	0		nc|ENSG00000235109|Q96LW9-2|ZSCAN31;ENSG00000235109|ENST00000344279|ZSCAN31	nc|ENSG00000235109|Q96LW9-2|ZSCAN31	nc|ENSG00000235109|Q96LW9-2|ZSCAN31	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	523.303655	1044.59276	0.59659	0.0003122	-0.37054	-0.0001939	0.22605	0.00011829	523.3033778025131	90.769	0.94716	90.769	90.048	90.995	0.00039673	0.029595	-1.8848E-05	NaN	11.495	172	72	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	511270			43032	8492	24853	24854							0.07224530363282611
SKLSSHLK	8	Unmodified	_SKLSSHLK_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.91387939453125	2	450.269084	898.523616	0.10011	4.5076E-05	0.43598	0.00019631	0.53609	0.00024139	450.26930697103387	28.74	0.40886	28.736	28.599	29.008	-0.0042572					17	13	2	0	0	0	0.34039	1	5100	5100		15.847	11.903	1	97137	+		43033	13882	24854	24855	52522	52522					0.07029491134369437
SKLSSHLK	8	Unmodified	_SKLSSHLK_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	450.269084	898.523616	0.023111	1.0406E-05	0.68358	0.00030779	0.70669	0.0003182	450.26939252194336	28.751	0.35901	28.751	28.661	29.02	0.0004673	0.0076465	0.00012992	NaN	15.847	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66845	+		43034	13882	24854	24855							0.07029491134369437
SKLYIKFWVV	10	Unmodified	_SKLYIKFWVV_					0	0	0			REV__ENST00000480884.5_1_3:56649942-56650128:+|nuORF	REV__ENST00000480884.5_1_3:56649942-56650128:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8814697265625	2	641.881542	1281.74853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.178	1	95.176	94.676	95.676	-0.0020142								0	0	0	0.37739	1	25419	25419		3.2813	0.28607	1		+		43035	21479	24855	24856	52523	52523					0.1189260088467563
SKMAEHRQQP	10	Unmodified	_SKMAEHRQQP_					0	0	0		ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5267639160156	3	404.536506	1210.58769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.322	1	15.212	14.712	15.712	-0.10981								0	0	0	0.37807	1	994	994		1.4551	0.26178	1				43036	2063	24856	24857	52524	52524					-0.00918096770988086
SKMTKKHS	8	Unmodified	_SKMTKKHS_					0	0	0			REV__L1MA4_dup8801|chr15:84897523-84898213:-|4.909709430609491|0.2819414872085645|4.12|528.0|4|1|sense	REV__L1MA4_dup8801|chr15:84897523-84898213:-|4.909709430609491|0.2819414872085645|4.12|528.0|4|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.21722412109375	2	473.760569	945.506586	-0.17249	-8.1717E-05	-0.40881	-0.00019368	-0.5813	-0.0002754	473.7604320475083	15.191	0.24414	15.191	15.044	15.289	0					11	8	2	0	0	0	0.34272	1	924	924		7.9102	0.62092	1	32804	+		43037	22784	24857	24858	52525	52525					0.03165247256924886
SKMTKKHS	8	Unmodified	_SKMTKKHS_					0	0	0			REV__L1MA4_dup8801|chr15:84897523-84898213:-|4.909709430609491|0.2819414872085645|4.12|528.0|4|1|sense	REV__L1MA4_dup8801|chr15:84897523-84898213:-|4.909709430609491|0.2819414872085645|4.12|528.0|4|1|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	473.760569	945.506586	0.0088798	4.2069E-06	-0.41383	-0.00019605	-0.40495	-0.00019185	473.76050208781544	15.303	0.21908	15.193	15.093	15.312	-0.10982	0.0011089	-2.5221E-06	NaN	7.9102	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23985	+		43038	22784	24857	24858							0.03165247256924886
SKNLSTKH	8	Unmodified	_SKNLSTKH_					0	0	0			REV__L1PBa_dup1914|chr16:20454552-20458311:+|1.873729371871474|0.2397336971051269|2.97|524.0|59|2|sense	REV__L1PBa_dup1914|chr16:20454552-20458311:+|1.873729371871474|0.2397336971051269|2.97|524.0|59|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.76885986328125	2	457.756341	913.498129	-0.1918	-8.7798E-05	0.23884	0.00010933	0.047036	2.1531E-05	457.7563441203665	14.28	0.57415	14.175	14.049	14.623	-0.10466					32	19	3	0	0	0	0.34313	1	652	652		6.7232	0	1	89836	+		43039	22832	24858	24859	52526	52526					0.03792016611942017
SKNSRKLQP	9	Unmodified	_SKNSRKLQP_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3009643554688	2	529.309272	1056.60399	0.26724	0.00014145	-0.084142	-4.4537E-05	0.18309	9.6913E-05	529.3092636389757	23.026	0.71691	23.026	22.763	23.48	0					59	24	4	0	0	0	0.26612	1	3357	3357		13.906	2.2658	1	342700			43040	8109	24859	24860	52527	52527					0.07795352457424087
SKPNSRKML	9	Unmodified	_SKPNSRKML_					0	0	0		ENST00000546455.5_1_12:47473502-47610158:+|nuORF	ENST00000546455.5_1_12:47473502-47610158:+|nuORF	ENST00000546455.5_1_12:47473502-47610158:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8169555664062	2	530.800226	1059.5859	0.42331	0.00022469	0.21236	0.00011272	0.63568	0.00033742	530.8005004020658	90.591	0.43758	90.681	90.492	90.929	0.090675					77	34	3	0	0	0	0.30064	1	24020	24020		8.7454	0.83525	1	570100			43041	11758	24860	24861	52528	52528					0.058488942110670905
SKQAQFFFFF	10	Unmodified	_SKQAQFFFFF_					0	0	0		LRBA|p.L1532Ffs*9|1|0.05|ENSG00000198589|chr4:150831950-150831951|-/TAAAAAAAAAA|frameshift_variant	LRBA|p.L1532Ffs*9|1|0.05|ENSG00000198589|chr4:150831950-150831951|-/TAAAAAAAAAA|frameshift_variant	LRBA|p.L1532Ffs*9|1|0.05|ENSG00000198589|chr4:150831950-150831951|-/TAAAAAAAAAA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.8851013183594	3	432.885241	1295.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.969	1	86.969	86.469	87.469	0								0	0	0	0.38104	1	22913	22913		1.7423	0	1				43042	12502	24861	24862	52529	52529					-0.002097085972536661
SKQDLRQYD	9	Unmodified	_SKQDLRQYD_					0	0	0			REV__nc|ENSG00000152291|O43493-6|TGOLN2	REV__nc|ENSG00000152291|O43493-6|TGOLN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.83544921875	2	576.785827	1151.5571	0.25979	0.00014984	-0.46166	-0.00026628	-0.20187	-0.00011644	576.7853809989122	23.423	0.59245	23.378	23.167	23.759	-0.044867					36	20	3	0	0	0	0.25843	1	3395	3395		2.9952	0	1	218240	+		43043	16572	24862	24863	52530	52530					-0.012615518843858808
SKQKWESIL	9	Unmodified	_SKQKWESIL_					0	0	0			REV__nc|ENSG00000129951|Q6T4P5-4|PLPPR3	REV__nc|ENSG00000129951|Q6T4P5-4|PLPPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8140258789062	2	559.813856	1117.61316	0.38422	0.00021509	-0.93605	-0.00052401	-0.55182	-0.00030892	559.8134735121815	58.493	1.1729	58.493	57.718	58.891	0					71	40	2	0	0	0	0.14786	1	14236	14236		31.268	5.0002	1	1061600	+		43044	15434	24863	24864	52531	52531					0.05905701023084475
SKQKWESIL	9	Unmodified	_SKQKWESIL_					0	0	0			REV__nc|ENSG00000129951|Q6T4P5-4|PLPPR3	REV__nc|ENSG00000129951|Q6T4P5-4|PLPPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.814208984375	2	559.813856	1117.61316	0.37916	0.00021226	-0.62549	-0.00035016	-0.24633	-0.0001379	559.8134577639221	58.261	1.0728	58.347	57.598	58.671	0.085621					71	38	2	0	0	0	0.11201	1	14166	14166		36.506	5.2379	1	1168300	+		43045	15434	24863	24864	52532	52532					0.05905701023084475
SKQKWESIL	9	Unmodified	_SKQKWESIL_					0	0	0			REV__nc|ENSG00000129951|Q6T4P5-4|PLPPR3	REV__nc|ENSG00000129951|Q6T4P5-4|PLPPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.8140869140625	2	559.813856	1117.61316	0.58469	0.00032732	-2.3501	-0.0013156	-1.7654	-0.00098832	559.812555411292	58.514	1.1193	58.499	57.77	58.889	-0.014271					65	40	2	0	0	0	0.074552	1	14221	14221		43.772	1.8168	1	1199600	+		43046	15434	24863	24864	52533	52533					0.05905701023084475
SKQLRQKYNV	10	Unmodified	_SKQLRQKYNV_					0	0	0		ENST00000521237.1_1_5:156849530-156849617:+|nuORF	ENST00000521237.1_1_5:156849530-156849617:+|nuORF	ENST00000521237.1_1_5:156849530-156849617:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.361572265625	2	632.362036	1262.70952	0.58	0.00036677	-0.93103	-0.00058875	-0.35102	-0.00022197	632.3612483903657	91.054	0.62966	91.054	90.823	91.452	0.00046539					116	42	3	0	0	0	0.41025	1	24125	24125		1.3295	0	1	5275100			43047	11488	24864	24865	52534	52534					0.08867268583026089
SKQRYLRSV	9	Unmodified	_SKQRYLRSV_					0	0	0			REV__nc|ENSG00000176845|Q641Q3-2|METRNL	REV__nc|ENSG00000176845|Q641Q3-2|METRNL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.3413696289062	2	568.830372	1135.64619	0.081254	4.622E-05	-0.35802	-0.00020365	-0.27677	-0.00015743	568.8304300490602	16.041	0.37697	16.041	15.918	16.295	0					15	12	2	0	0	0	0.26168	1	1253	1253		1.8442	0	1	34721	+		43048	17952	24865	24866	52535	52535					0.08379327865759478
SKREMEREITR	11	Unmodified	_SKREMEREITR_					0	0	0		nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant;nc|ENSG00000157106|Q96Q15-4|SMG1	nc|ENSG00000157106|Q96Q15-3|SMG1	nc|ENSG00000157106|Q96Q15-3|SMG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7740783691406	3	478.920908	1433.7409	-0.16385	-7.8471E-05	-2.494	-0.0011944	-2.6578	-0.0012729	479.254287179991	12.899	0.31926	12.831	12.702	13.022	-0.067495					25	10	4	0	0	0	0.33303	1	251	251		2.4348	1.325	1	41116			43049	5279	24866	24867	52536	52536					0.0413747355482883
SKRHKVSLIGN	11	Unmodified	_SKRHKVSLIGN_					0	0	0			REV__ENST00000512550.1_1_5:72868339-72873863:+|nuORF	REV__ENST00000512550.1_1_5:72868339-72873863:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.86865234375	2	619.870028	1237.7255	0.29543	0.00018313	-0.1832	-0.00011356	0.11223	6.9568E-05	619.8690396100932	94.564	1.5426	94.562	93.798	95.341	-0.0020142					222	130	2	0	0	0	0.43149	2	25015	25015;25184		7.1017	2.5729	1	200390	+		43050	17151	24867	24868	52537;52538	52537					0.11614974819940471
SKRPGETPP	9	Unmodified	_SKRPGETPP_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.816162109375	2	484.761623	967.508694	0.15864	7.6905E-05	-0.76912	-0.00037284	-0.61047	-0.00029593	484.7614249536096	26.966	0.61724	26.966	26.528	27.146	0					34	21	2	0	0	0	0.25843	1	4443	4443		5.7319	0.83484	1	115740	+		43051	18249	24868	24869	52539	52539					0.023639992663675002
SKRPGETPP	9	Unmodified	_SKRPGETPP_					0	0	0			REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	REV__nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	484.761623	967.508694	0.17055	8.2674E-05	-0.80534	-0.0003904	-0.6348	-0.00030772	484.76129848721956	26.909	0.61177	26.887	26.709	27.321	-0.021412	-0.038945	0.00026707	NaN	5.7319	31	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97187	+		43052	18249	24868	24869							0.023639992663675002
SKRPKTRPSQL	11	Unmodified	_SKRPKTRPSQL_					0	0	0			REV__nc|ENSG00000109790|Q96PQ7-5|KLHL5	REV__nc|ENSG00000109790|Q96PQ7-5|KLHL5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.2547607421875	3	433.261482	1296.76262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.918	1	95.918	95.418	96.418	0								0	0	0	0.35514	1	25614	25614		3.5927	2.3778	1		+		43053	14654	24869	24870	52540	52540					0.12610646365692446
SKRPKTRPSQL	11	Unmodified	_SKRPKTRPSQL_					0	0	0			REV__nc|ENSG00000109790|Q96PQ7-5|KLHL5	REV__nc|ENSG00000109790|Q96PQ7-5|KLHL5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.25469970703125	3	433.261482	1296.76262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.886	1	95.882	95.382	96.382	-0.0038147								0	0	0	0.35514	1	25627	25627		3.5927	2.3778	1		+		43054	14654	24869	24870	52541	52541					0.12610646365692446
SKRRKAHL	8	Unmodified	_SKRRKAHL_					0	0	0		ENSG00000107957|ENST00000369774|SH3PXD2A	ENSG00000107957|ENST00000369774|SH3PXD2A	ENSG00000107957|ENST00000369774|SH3PXD2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3147888183594	2	498.314692	994.614831	0.26264	0.00013088	-0.011555	-5.7583E-06	0.25108	0.00012512	498.3145959058475	18.155	0.63627	18.155	17.898	18.535	0					28	21	2	0	0	0	0.46092	1	1848	1848		2.0598	0	1	60391			43055	2157	24870	24871	52542	52542					0.11730799622353061
SKRTRRKP	8	Unmodified	_SKRTRRKP_					0	0	0			REV__nc|ENSG00000119969|Q9NRZ9-6|HELLS	REV__nc|ENSG00000119969|Q9NRZ9-6|HELLS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2880859375	2	514.825424	1027.63629	-0.24018	-0.00012365	2.3549	0.0012124	2.1147	0.0010887	514.8267651832703	12.629	0.21098	12.562	12.491	12.702	-0.067496					10	6	2	0	0	0	0.34313	1	197	197		6.7232	2.3939	1	59145	+		43056	15069	24871	24872	52543	52543					0.12358184651088777
SKSHTKSLHLK	11	Unmodified	_SKSHTKSLHLK_					0	0	0			REV__ENSG00000182463|ENST00000371497|TSHZ2	REV__ENSG00000182463|ENST00000371497|TSHZ2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3699951171875	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.86	1	97.86	97.36	98.36	0								0	0	0	0.36517	1	26177	26177		4.897	0.36815	1		+		43057	18199	24872	24873	52544	52544					0.1033955510006308
SKSHTKSLHLK	11	Unmodified	_SKSHTKSLHLK_					0	0	0			REV__ENSG00000182463|ENST00000371497|TSHZ2	REV__ENSG00000182463|ENST00000371497|TSHZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3701171875	2	633.369861	1264.72517	0.37729	0.00023896	-0.98299	-0.0006226	-0.6057	-0.00038363	633.3694672473117	91.74	1.3581	91.831	91.476	92.834	0.090675					153	94	2	0	0	0	0.42346	1	24614	24614		8.1555	1.5252	1	221760	+		43058	18199	24872	24873	52545	52545					0.1033955510006308
SKSHTKSLHLK	11	Unmodified	_SKSHTKSLHLK_					0	0	0			REV__ENSG00000182463|ENST00000371497|TSHZ2	REV__ENSG00000182463|ENST00000371497|TSHZ2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.368896484375	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112	1	111.98	111.48	112.48	-0.015625								0	0	0	0.37609	1	29135	29135		2.4985	1.0166	1		+		43059	18199	24872	24873	52546	52546					0.1033955510006308
SKSHTKSLHLK	11	Unmodified	_SKSHTKSLHLK_					0	0	0			REV__ENSG00000182463|ENST00000371497|TSHZ2	REV__ENSG00000182463|ENST00000371497|TSHZ2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3690185546875	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.376	1	93.375	92.875	93.875	-0.00051117								0	0	0	0.35514	1	24864	24864		7.1017	2.2047	1		+		43060	18199	24872	24873	52547	52547					0.1033955510006308
SKSKQKEDNHI	11	Unmodified	_SKSKQKEDNHI_					0	0	0		ENSG00000166801|ENST00000675163|FAM111A	ENSG00000166801|ENST00000675163|FAM111A	ENSG00000166801|ENST00000675163|FAM111A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.564453125	3	438.565119	1312.67353	-0.29292	-0.00012846	-1.7443	-0.00076501	-2.0373	-0.00089347	438.5645667164642	35.449	0.66622	35.531	35.287	35.953	0.081432					55	23	3	0	0	0	0.41892	2	7093	7093;7153		8.7518	3.1301	1	923590			43061	6115	24873	24874	52548;52549	52548					0.029697666155243496
SKTAIQAEAKP	11	Unmodified	_SKTAIQAEAKP_					0	0	0			REV__ENST00000426641.3_1_12:9794534-9794771:+|nuORF	REV__ENST00000426641.3_1_12:9794534-9794771:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.775634765625	2	572.322045	1142.62954	0.13529	7.7427E-05	-3.8726	-0.0022164	-3.7373	-0.0021389	572.3204000321697	25.227	0.61972	25.172	24.972	25.592	-0.055931					29	21	2	0	0	0	0.3303	1	4111	4111		3.0723	0	1	81763	+		43062	20905	24874	24875	52550	52550					0.06392782189163881
SKTCRLFIAF	10	Unmodified	_SKTCRLFIAF_					0	0	0			REV__ENSG00000203734|ENST00000541398|ECT2L	REV__ENSG00000203734|ENST00000541398|ECT2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.7171020507812	2	593.326076	1184.6376	0.24945	0.00014801	3.3959	0.0020149	3.6454	0.0021629	593.3283678083789	98.045	0.043106	98.106	98.083	98.126	0.061516					6	4	2	0	0	0	0.31847	1	26232	26232		6.7232	0.51738	1	98021	+		43063	18905	24875	24876	52551	52551					0.05266637904946947
SKTFYNGMN	9	Unmodified	_SKTFYNGMN_					0	0	0			REV__nc|ENSG00000083828|Q9NXT0-2|ZNF586	REV__nc|ENSG00000083828|Q9NXT0-2|ZNF586	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2401733398438	2	531.239667	1060.46478	0.72797	0.00038673	0.73813	0.00039212	1.4661	0.00077885	531.2398029399275	64.072	0.54361	64.072	63.826	64.37	0					55	19	4	0	0	0	0.28674	1	15925	15925		10.824	2.0785	1	478590	+		43064	22901	24876	24877	52552	52552					-0.06303353222256192
SKTSGKAK	8	Unmodified	_SKTSGKAK_					0	0	0		nc|ENSG00000123243|Q86UX2-4|ITIH5;ENST00000476417.5_1_10:7615057-7659255:-|nuORF	nc|ENSG00000123243|Q86UX2-4|ITIH5	nc|ENSG00000123243|Q86UX2-4|ITIH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.7395324707031	2	403.74016	805.465767	-0.1661	-6.706E-05	-2.013	-0.00081275	-2.1791	-0.00087981	403.73961743779836	75.567	0.91736	75.619	75.187	76.104	0.052361					104	33	5	0	0	0	0.46692	1	19451	19451		0	0	1	1663900			43065	10945	24877	24878	52553	52553					0.05525229208944893
SKVRHMQEWL	10	Unmodified	_SKVRHMQEWL_					0	0	0		ENST00000357971.7_1_14:75520149-75528458:-|nuORF;ENSG00000119640|ENST00000238618|ACYP1	ENST00000357971.7_1_14:75520149-75528458:-|nuORF	ENST00000357971.7_1_14:75520149-75528458:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.5643615722656	3	438.564285	1312.67103	0.032059	1.406E-05	0.067634	2.9662E-05	0.099693	4.3722E-05	438.5644380882784	35.485	0.66005	35.563	35.264	35.924	0.078167					66	23	4	0	0	0	0.37823	1	7112	7112		7.4771	0	1	985050			43066	2891	24878	24879	52554	52554					0.027196396768658815
SKVSNVHV	8	Unmodified	_SKVSNVHV_					0	0	0		nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.26904296875	2	435.245609	868.476666	-0.15295	-6.657E-05	0.4491	0.00019547	0.29615	0.0001289	435.2458240218869	16.701	0.4603	16.701	16.491	16.952	0					34	15	3	0	0	0	0.30241	1	1399	1399		19.257	5.3509	1	179850			43067	5646	24879	24880	52555	52555					0.037166315832337204
SKVSSPRKM	9	Unmodified	_SKVSSPRKM_					0	0	0			REV__ENSG00000113645|ENST00000265293|WWC1	REV__ENSG00000113645|ENST00000265293|WWC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.287109375	2	510.286951	1018.55935	-0.021329	-1.0884E-05	-1.1083	-0.00056554	-1.1296	-0.00057643	510.2865611234649	13.047	0.30167	13.047	12.925	13.227	0					19	10	3	0	0	0	0.33508	1	323	323		3.5965	0	1	43243	+		43068	14816	24880	24881	52556	52556					0.050812053197319074
SKVVAPWF	8	Unmodified	_SKVVAPWF_					0	0	0			REV__nc|ENSG00000160953|Q2TAK8-2|PWWP3A	REV__nc|ENSG00000160953|Q2TAK8-2|PWWP3A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.26287841796875	2	467.263271	932.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.99	1	119.01	118.51	119.51	0.026253								0	0	0	0.37992	1	30792	30792		0.79363	0	1		+		43069	16926	24881	24882	52557	52557					0.043032941110254797
SKWLRKEF	8	Unmodified	_SKWLRKEF_					0	0	0		ENST00000370214.8_1_1:94964183-94964231:+|nuORF	ENST00000370214.8_1_1:94964183-94964231:+|nuORF	ENST00000370214.8_1_1:94964183-94964231:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8262939453125	2	547.311284	1092.60801	0.32599	0.00017842	-1.1567	-0.00063309	-0.83073	-0.00045467	547.3103628763297	61.929	0.57735	61.92	61.7	62.278	-0.0085564					36	20	2	0	0	0	0.34247	1	15332	15332		8.5933	0.68312	1	312980			43070	9791	24882	24883	52558	52558					0.06541441951139859
SKYLKEAF	8	Unmodified	_SKYLKEAF_					0	0	0			REV__ENST00000471395.1_1_2:70045687-70052644:+|nuORF	REV__ENST00000471395.1_1_2:70045687-70052644:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.5950927734375	2	493.271293	984.528032	0.51785	0.00025544	-2.3107	-0.0011398	-1.7928	-0.00088435	493.27081110132053	20.912	0.22763	20.912	20.772	21	0					10	7	2	0	0	0	0.34185	1	2690	2690		10.183	1.5901	1	23083	+		43071	18702	24883	24884	52559	52559					0.035149555572729696
SLAAAPLPGPA	11	Unmodified	_SLAAAPLPGPA_					0	0	0			REV__ENSG00000173200|ENST00000464300|PARP15	REV__ENSG00000173200|ENST00000464300|PARP15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7663269042969	2	482.776742	963.538931	0.30633	0.00014789	-0.47999	-0.00023173	-0.17366	-8.3838E-05	482.77654999343974	40.594	0.32985	40.694	40.505	40.835	0.099407					16	11	2	0	0	0	0.34542	1	8697	8697		18.146	1.2041	1	165680	+		43072	17767	24884	24885	52560	52560					0.05570357931560466
SLAACLCDENN	11	Unmodified	_SLAACLCDENN_					0	0	0			REV__ENSG00000198788|ENST00000675028|MUC2	REV__ENSG00000198788|ENST00000675028|MUC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.7378540039062	2	576.736631	1151.45871	0.34619	0.00019966	1.6323	0.00094143	1.9785	0.0011411	576.7373980394391	63.552	0.65581	63.552	63.285	63.941	0					37	23	2	0	0	0	0.32231	1	15759	15759		14.405	2.7651	1	440700	+		43073	18861	24885	24886	52561	52561					-0.11096239516086825
SLAACLCDENN	11	Unmodified	_SLAACLCDENN_					0	0	0			REV__ENSG00000198788|ENST00000675028|MUC2	REV__ENSG00000198788|ENST00000675028|MUC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.7376098632812	2	576.736631	1151.45871	0.41879	0.00024153	1.2992	0.00074927	1.7179	0.0009908	576.737129812237	63.669	0.61213	63.661	63.325	63.937	-0.0085526					34	21	2	0	0	0	0.35271	1	15771	15771		17.443	0.50035	1	368050	+		43074	18861	24885	24886	52562	52562					-0.11096239516086825
SLAACLCDENN	11	Unmodified	_SLAACLCDENN_					0	0	0			REV__ENSG00000198788|ENST00000675028|MUC2	REV__ENSG00000198788|ENST00000675028|MUC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	576.736631	1151.45871	0.45948	0.000265	1.7583	0.0010141	2.2178	0.0012791	576.7372801955867	63.537	0.67924	63.633	63.282	63.961	0.095722	0.017832	0.00023127	NaN	14.405	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265450	+		43075	18861	24885	24886							-0.11096239516086825
SLAACLCDENN	11	Unmodified	_SLAACLCDENN_					0	0	0			REV__ENSG00000198788|ENST00000675028|MUC2	REV__ENSG00000198788|ENST00000675028|MUC2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	576.736631	1151.45871	0.41879	0.00024153	1.2992	0.00074927	1.7179	0.0009908	576.737129812237	63.669	0.61213	63.661	63.325	63.937	-0.0085526	0.0453	-0.00029836	NaN	14.405	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368050	+		43076	18861	24885	24886							-0.11096239516086825
SLACSPNGASF	11	Unmodified	_SLACSPNGASF_					0	0	0		nc|ENSG00000105875|A4D1P6-2|WDR91;ENSG00000105875|ENST00000354475|WDR91	nc|ENSG00000105875|A4D1P6-2|WDR91	nc|ENSG00000105875|A4D1P6-2|WDR91	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7682495117188	2	527.237124	1052.45969	0.40342	0.0002127	-0.2276	-0.00012	0.17582	9.27E-05	527.23703311159	26.556	0.51721	26.556	26.296	26.813	0					27	17	2	0	0	0	0.32951	1	4353	4353		8.7454	1.4562	1	55197			43077	2032	24886	24887	52563	52563					-0.06443657084878396
SLADAINTEF	10	Unmodified	_SLADAINTEF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8426513671875	2	540.764029	1079.5135	0.48261	0.00026098	-0.23964	-0.00012959	0.24297	0.00013139	540.7638117079708	67.078	0.93829	67.078	66.341	67.279	0					61	32	3	0	0	0	0.29613	1	16800	16800		23.79	8.5413	1	118090			43078	537	24887	24888	52564	52564					-0.023071613815318415
SLADAINTEF	10	Unmodified	_SLADAINTEF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8320922851562	2	540.764029	1079.5135	0.35255	0.00019065	0.45194	0.00024439	0.80449	0.00043504	540.7645078369543	69.331	0.47339	69.331	69.037	69.511	0					47	16	4	0	0	0	0.26476	1	17509	17509		27.223	7.7842	1	169830			43079	537	24887	24888	52565	52565					-0.023071613815318415
SLADAINTEF	10	Unmodified	_SLADAINTEF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8321533203125	2	540.764029	1079.5135	0.50465	0.0002729	0.0073282	3.9628E-06	0.51198	0.00027686	540.7642739564803	69.265	0.56726	69.331	69.012	69.579	0.066048					64	18	5	0	0	0	0.29112	1	17484	17484		24.991	11.483	1	248800			43080	537	24887	24888	52566	52566					-0.023071613815318415
SLADAINTEF	10	Unmodified	_SLADAINTEF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8320922851562	2	540.764029	1079.5135	0.46266	0.00025019	0.39072	0.00021129	0.85338	0.00046148	540.7642637165053	69.299	0.48853	69.277	69	69.489	-0.022087					31	16	3	0	0	0	0.30093	1	17507	17507		21.537	4.4504	1	177160			43081	537	24887	24888	52567	52567					-0.023071613815318415
SLADFQIEK	9	Unmodified	_SLADFQIEK_					0	0	0		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7953491210938	2	525.776939	1049.53933	0.69269	0.0003642	-1.3084	-0.00068791	-0.61567	-0.00032371	525.7767945308258	48.442	0.81314	48.442	48.131	48.944	0					114	28	6	0	0	0	0.18733	1	11117	11117		35.612	4.3439	1	3753400			43082	2876	24888	24889	52568	52568					0.016537328607682866
SLADFQIEK	9	Unmodified	_SLADFQIEK_					0	0	0		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7952880859375	2	525.776939	1049.53933	0.83806	0.00044063	-0.42067	-0.00022118	0.41739	0.00021945	525.7766893603351	48.344	0.83656	48.392	48.101	48.938	0.04752					74	30	4	0	0	0	0.083138	1	11108	11108		40.725	7.9392	1	3825000			43083	2876	24888	24889	52569	52569					0.016537328607682866
SLADFQIEK	9	Unmodified	_SLADFQIEK_					0	0	0		ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	ENSG00000119408|ENST00000320246|NEK6	ENSG00000119408|ENST00000320246|NEK6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	525.776939	1049.53933	0.73915	0.00038863	-0.3151	-0.00016567	0.42405	0.00022296	525.7767286248419	48.296	0.63039	48.339	48.065	48.695	0.04332	-0.051869	8.7233E-05	NaN	40.725	56	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4280200			43084	2876	24888	24889							0.016537328607682866
SLAEFSQQTN	10	Unmodified	_SLAEFSQQTN_					0	0	0			REV__ENSG00000115233|ENST00000409682|PSMD14	REV__ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.7645874023438	2	562.76456	1123.51457	0.11439	6.4377E-05	0.30301	0.00017052	0.4174	0.0002349	562.7646756672489	22.454	0.65585	22.454	22.189	22.845	0					52	22	3	0	0	0	0.3001	2	3133	3133;3184		20.415	3.3016	1	188890	+		43085	14867	24889	24890	52570;52571	52570					-0.04224947012608027
SLAEFSQQTN	10	Unmodified	_SLAEFSQQTN_					0	0	0			REV__ENSG00000115233|ENST00000409682|PSMD14	REV__ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.7645263671875	2	562.76456	1123.51457	0.19601	0.00011031	-0.037412	-2.1054E-05	0.1586	8.9252E-05	562.7644104717705	22.616	0.66514	22.529	22.217	22.883	-0.087608					61	23	4	0	0	0	0.3001	1	3167	3167		20.415	3.3016	1	218890	+		43086	14867	24889	24890	52572	52572					-0.04224947012608027
SLAEFSQQTN	10	Unmodified	_SLAEFSQQTN_					0	0	0			REV__ENSG00000115233|ENST00000409682|PSMD14	REV__ENSG00000115233|ENST00000409682|PSMD14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.7645263671875	2	562.76456	1123.51457	0.19601	0.00011031	-0.037412	-2.1054E-05	0.1586	8.9252E-05	562.7644104717705	22.616	0.66514	22.529	22.217	22.883	-0.087608					61	23	4	0	0	0	0.28569	1	3214	3214		26.268	26.268	1	218890	+		43087	14867	24889	24890	52573	52573					-0.04224947012608027
SLAEFSQQTN	10	Unmodified	_SLAEFSQQTN_					0	0	0			REV__ENSG00000115233|ENST00000409682|PSMD14	REV__ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.7645874023438	2	562.76456	1123.51457	0.071067	3.9994E-05	0.071427	4.0197E-05	0.14249	8.019E-05	562.7645895497214	22.602	0.63521	22.557	22.238	22.873	-0.044867					51	21	3	0	0	0	0.25219	1	3159	3159		26.268	3.5319	1	196900	+		43088	14867	24889	24890	52574	52574					-0.04224947012608027
SLAEFSQQTN	10	Unmodified	_SLAEFSQQTN_					0	0	0			REV__ENSG00000115233|ENST00000409682|PSMD14	REV__ENSG00000115233|ENST00000409682|PSMD14	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	562.76456	1123.51457	0.11439	6.4377E-05	0.30301	0.00017052	0.4174	0.0002349	562.7646756672489	22.454	0.65585	22.454	22.189	22.845	0	-0.059337	0.00021785	NaN	26.268	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188890	+		43089	14867	24889	24890							-0.04224947012608027
SLAEILLKK	9	Unmodified	_SLAEILLKK_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000205339|ENST00000379719|IPO7;ENSG00000133704|ENST00000256079|IPO8	ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2768249511719	2	507.831517	1013.64848	0.6042	0.00030683	-1.8619	-0.00094555	-1.2577	-0.00063872	507.83037575885595	47.762	0.51198	47.809	47.51	48.022	0.047523					31	18	3	0	0	0	0.11018	1	10844	10844		53.404	22.767	1	1747600			43090	8284;3725	24890	24891	52575	52575					0.14220363550907678
SLAEILLKK	9	Unmodified	_SLAEILLKK_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000205339|ENST00000379719|IPO7;ENSG00000133704|ENST00000256079|IPO8	ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.27685546875	2	507.831517	1013.64848	0.5295	0.0002689	-1.6305	-0.00082803	-1.101	-0.00055913	507.83050835670514	47.743	0.42652	47.786	47.53	47.957	0.04332					33	15	3	0	0	0	0.059987	1	10833	10833		70.332	38.027	1	1915400			43091	8284;3725	24890	24891	52576	52576					0.14220363550907678
SLAEQGTKK	9	Unmodified	_SLAEQGTKK_					0	0	0			REV__nc|ENSG00000115414|P02751-4|FN1	REV__nc|ENSG00000115414|P02751-4|FN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2264709472656	2	481.269281	960.52401	0.19689	9.4759E-05	0.0081784	3.936E-06	0.20507	9.8695E-05	481.2692881602103	26.728	0.56459	26.689	26.433	26.998	-0.038671					37	19	3	0	0	0	0.25779	1	4531	4531		3.2813	1.2216	1	152730	+		43092	22959	24891	24892	52577	52577					0.04216866063575253
SLAFLLNQVIF	11	Unmodified	_SLAFLLNQVIF_					0	0	0		ENST00000565424.2_1_16:47581649-47581931:+|nuORF	ENST00000565424.2_1_16:47581649-47581931:+|nuORF	ENST00000565424.2_1_16:47581649-47581931:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5640869140625	3	422.24818	1263.72271	-0.0089741	-3.7893E-06	3.851	0.0016261	3.842	0.0016223	422.2505041680241	23.217	0.75064	23.172	22.925	23.675	-0.044867					44	26	3	0	0	0	0.33287	1	3505	3505		2.8433	2.1456	1	187240			43093	11963	24892	24893	52578	52578					0.10139706642416968
SLAFLQKHLGL	11	Unmodified	_SLAFLQKHLGL_					0	0	0		ENSG00000146070|ENST00000274793|PLA2G7	ENSG00000146070|ENST00000274793|PLA2G7	ENSG00000146070|ENST00000274793|PLA2G7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5799560546875	3	409.580041	1225.71829	0.099945	4.0935E-05	-0.24572	-0.00010064	-0.14578	-5.9709E-05	409.57987632273284	49.793	0.44101	49.838	49.566	50.007	0.044891					47	16	4	0	0	0	0.45202	1	11519	11519		4.4062	0	1	367110			43094	4687	24893	24894	52579	52579					0.11446242219494707
SLAGAAQILLK	11	Unmodified	_SLAGAAQILLK_					0	0	0		ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.840087890625	2	542.839874	1083.66519	0.52888	0.0002871	-0.4538	-0.00024634	0.075087	4.076E-05	542.8394484366556	52.527	0.83706	52.527	52.123	52.96	0					60	25	4	0	0	0	0.049441	1	12344	12344		53.404	13.165	1	2372200			43095	611	24894	24895	52580	52580					0.12670864436836382
SLAGAAQILLK	11	Unmodified	_SLAGAAQILLK_					0	0	0		ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8399047851562	2	542.839874	1083.66519	0.65103	0.0003534	-0.74212	-0.00040285	-0.091091	-4.9448E-05	542.8392838639156	52.48	0.89771	52.531	52.086	52.984	0.050575					76	31	4	0	0	0	0.049441	2	12328	12328;12377		53.404	13.165	1	2775600			43096	611	24894	24895	52581;52582	52581					0.12670864436836382
SLAGAAQILLK	11	Unmodified	_SLAGAAQILLK_					0	0	0		ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	ENSG00000042429|ENST00000251871|MED17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8396606445312	2	542.839874	1083.66519	0.48378	0.00026261	-0.39626	-0.0002151	0.087518	4.7508E-05	542.8395554199117	52.604	0.88006	52.604	52.246	53.126	-0.00081253					74	28	4	0	0	0	0.075948	2	12342	12342;12398		45.74	5.5007	1	2876100			43097	611	24894	24895	52583;52584	52583					0.12670864436836382
SLAKKAEL	8	Unmodified	_SLAKKAEL_					0	0	0			REV__nc|ENSG00000109689|Q9P246-2|STIM2	REV__nc|ENSG00000109689|Q9P246-2|STIM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.96075439453125	2	430.26601	858.517468	0.027236	1.1719E-05	0.04407	1.8962E-05	0.071307	3.0681E-05	430.2659871657224	36.139	0.45011	36.139	35.882	36.332	0					29	16	2	0	0	0	0.34218	1	7257	7257		9.3474	7.0447	1	375720	+		43098	22937	24895	24896	52585	52585					0.08254972902852842
SLALARPS	8	Unmodified	_SLALARPS_					0	0	0			REV__ENST00000486667.5_1_1:70687434-70687488:+|nuORF	REV__ENST00000486667.5_1_1:70687434-70687488:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.21087646484375	2	407.742702	813.470852	-0.1965	-8.012E-05	0.12245	4.993E-05	-0.074042	-3.019E-05	407.7426904511961	17.031	0.54233	16.913	16.746	17.289	-0.11739					31	19	3	0	0	0	0.34319	1	1604	1604		5.7604	0	1	61247	+		43099	21553	24896	24897	52586	52586					0.05665533071578466
SLALHLVWTT	10	Unmodified	_SLALHLVWTT_					0	0	0			REV__ENSG00000183134|ENST00000332539|PTGDR2	REV__ENSG00000183134|ENST00000332539|PTGDR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8238525390625	2	570.824224	1139.63389	-0.050965	-2.9092E-05	-2.0199	-0.001153	-2.0708	-0.0011821	570.823155811249	15.055	0.84117	14.99	14.646	15.487	-0.064414					54	28	3	0	0	0	0.38233	1	938	938		6.7232	0.51738	1	150980	+		43100	18242	24897	24898	52587	52587					0.06966291402773095
SLALRCLIF	9	Unmodified	_SLALRCLIF_					0	0	0		Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|142|1|anti-sense	Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|142|1|anti-sense	Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|142|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2467651367188	2	518.304613	1034.59467	0.19163	9.9325E-05	0.56695	0.00029385	0.75858	0.00039318	518.3064619342006	61.449	0.202	61.449	61.335	61.537	0					10	7	2	0	0	0	0.25202	1	15066	15066		10.824	2.2306	1	265030			43101	12376	24898	24899	52588	52588					0.07875867847519658
SLAMLPNLI	9	Unmodified	_SLAMLPNLI_					0	0	0		ENST00000382580.6_1_22:29126449-29130456:-|nuORF	ENST00000382580.6_1_22:29126449-29130456:-|nuORF	ENST00000382580.6_1_22:29126449-29130456:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	486.283346	970.552139	0.21765	0.00010584	0.75801	0.00036861	0.97566	0.00047445	486.2833798530373	73.869	1.9107	73.838	72.331	74.241	-0.030655					105	68	3	0	0	0	0.25526	1	18694	18694		7.9102	1.187	1	2322900			43102	10010	24899	24900	52589	52589					0.06568472719300189
SLAPFAARLA	10	Unmodified	_SLAPFAARLA_					0	0	0			REV__ENSG00000157927|ENST00000399583|RADIL	REV__ENSG00000157927|ENST00000399583|RADIL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.31158447265625	2	508.798009	1015.58147	0.56413	0.00028703	0.87245	0.0004439	1.4366	0.00073093	509.30218858689295	84.29	0.36867	84.29	84.186	84.555	0					20	13	2	0	0	0	0.33817	1	22152	22152		14.838	2.3067	1	188600	+		43103	16799	24900	24901	52590	52590					0.07429753059795985
SLAPLPPL	8	Unmodified	_SLAPLPPL_					0	0	0			REV__ENSG00000275342|ENST00000615670|PRAG1	REV__ENSG00000275342|ENST00000615670|PRAG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2523498535156	2	404.252372	806.49019	-0.0046476	-1.8788E-06	0.29207	0.00011807	0.28742	0.00011619	404.2523723072077	72.154	0.84581	72.211	71.922	72.767	0.056572					49	30	2	0	0	0	0.2157	1	18377	18377		40.449	0	1	644580	+		43104	19329	24901	24902	52591	52591					0.0792048936248193
SLAPTWLSP	9	Unmodified	_SLAPTWLSP_					0	0	0		ENSG00000168140|ENST00000304735|VASN	ENSG00000168140|ENST00000304735|VASN	ENSG00000168140|ENST00000304735|VASN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8004150390625	2	486.263468	970.512382	0.11721	5.6997E-05	0.44655	0.00021714	0.56376	0.00027414	486.263623116264	59.499	0.68044	59.499	59.107	59.787	0					32	23	2	0	0	0	0.1854	1	14473	14473		32.305	10.559	1	159710			43105	6250	24902	24903	52592	52592					0.025946690402406603
SLAQAPIPAP	10	Unmodified	_SLAQAPIPAP_					0	0	0		ENST00000602130.5_1_19:41808830-41812642:+|nuORF	ENST00000602130.5_1_19:41808830-41812642:+|nuORF	ENST00000602130.5_1_19:41808830-41812642:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.766357421875	2	482.776742	963.538931	0.39638	0.00019136	-0.70191	-0.00033887	-0.30553	-0.0001475	482.7762267094513	40.677	0.37704	40.77	40.502	40.879	0.09267					21	13	2	0	0	0	0.34325	1	8722	8722		13.906	0.86358	1	191170			43106	12262	24903	24904	52593	52593					0.05570357931549097
SLAQKFRRKL	10	Unmodified	_SLAQKFRRKL_					0	0	0			REV__ENSG00000122035|ENST00000241463|RASL11A	REV__ENSG00000122035|ENST00000241463|RASL11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.57489013671875	3	416.262935	1245.76697	0.012174	5.0675E-06	-0.4897	-0.00020384	-0.47753	-0.00019878	416.26285473439765	28.384	0.52539	28.38	27.994	28.519	-0.0042572					32	18	2	0	0	0	0.32068	1	4862	4862		3.5871	0	1	89224	+		43107	15146	24904	24905	52594	52594					0.15392155579274913
SLAQKFRRKL	10	Unmodified	_SLAQKFRRKL_					0	0	0			REV__ENSG00000122035|ENST00000241463|RASL11A	REV__ENSG00000122035|ENST00000241463|RASL11A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	416.262935	1245.76697	-0.27608	-0.00011492	-0.035222	-1.4662E-05	-0.3113	-0.00012958	416.2629865127005	28.444	0.553	28.444	28.207	28.76	0	0.020321	0.00041418	NaN	3.5871	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119320	+		43108	15146	24904	24905							0.15392155579274913
SLAQKFRRKL	10	Unmodified	_SLAQKFRRKL_					0	0	0			REV__ENSG00000122035|ENST00000241463|RASL11A	REV__ENSG00000122035|ENST00000241463|RASL11A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	416.262935	1245.76697	-0.093149	-3.8774E-05	-0.58368	-0.00024296	-0.67683	-0.00028174	416.26264500751955	28.446	0.58499	28.447	28.13	28.715	0.0004673	0.023383	-0.00027072	NaN	3.5871	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98253	+		43109	15146	24904	24905							0.15392155579274913
SLAQQRESA	9	Unmodified	_SLAQQRESA_					0	0	0			REV__ENSG00000042832|ENST00000220616|TG	REV__ENSG00000042832|ENST00000220616|TG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.26629638671875	2	495.254163	988.493772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.653	1	16.538	16.038	17.038	-0.11434								0	0	0	0.2505	1	1394	1394		6.2058	0	1		+		43110	13534	24905	24906	52595	52595					-0.0009349260161570783
SLARPLLLL	9	Unmodified	_SLARPLLLL_					0	0	0			REV__ENST00000409117.7_1_2:179316324-179318191:+|nuORF	REV__ENST00000409117.7_1_2:179316324-179318191:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3346862792969	2	498.334227	994.653902	0.13784	6.8688E-05	0.62149	0.00030971	0.75933	0.0003784	498.3344280646684	73.687	1.0667	73.687	73.307	74.374	0					92	36	4	0	0	0	0.12642	1	18860	18860		34.402	1.616	1	2867400	+		43111	20754	24906	24907	52596	52596					0.15636087133384535
SLARPLLLL	9	Unmodified	_SLARPLLLL_					0	0	0			REV__ENST00000409117.7_1_2:179316324-179318191:+|nuORF	REV__ENST00000409117.7_1_2:179316324-179318191:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.33441162109375	2	498.334227	994.653902	0.47787	0.00023814	-0.35581	-0.00017731	0.12206	6.0827E-05	498.3344097747866	67.911	3.1023	67.989	67.687	70.789	0.078041					238	111	5	0	0	0	0.12642	1	17170	17170		34.402	5.3201	1	33693000	+		43112	20754	24906	24907	52597	52597					0.15636087133384535
SLARPLLLL	9	Unmodified	_SLARPLLLL_					0	0	0			REV__ENST00000409117.7_1_2:179316324-179318191:+|nuORF	REV__ENST00000409117.7_1_2:179316324-179318191:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.33428955078125	2	498.334227	994.653902	0.35811	0.00017846	-0.26457	-0.00013184	0.093538	4.6613E-05	498.33442301344934	67.987	2.4153	67.971	67.672	70.087	-0.016296					236	86	5	0	0	0	0.088443	1	17022	17022		39.95	1.7741	1	33486000	+		43113	20754	24906	24907	52598	52598					0.15636087133384535
SLARPLLLL	9	Unmodified	_SLARPLLLL_					0	0	0			REV__ENST00000409117.7_1_2:179316324-179318191:+|nuORF	REV__ENST00000409117.7_1_2:179316324-179318191:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.3343811035156	2	498.334227	994.653902	0.27089	0.00013499	0.53427	0.00026625	0.80516	0.00040124	498.3343916071678	73.759	1.2008	73.728	73.041	74.241	-0.030655					96	43	4	0	0	0	0.079752	1	18833	18833		41.84	1.8899	1	2643500	+		43114	20754	24906	24907	52599	52599					0.15636087133384535
SLARVELV	8	Unmodified	_SLARVELV_					0	0	0			REV__ENST00000312358.11_1_2:220352985-220353325:+|nuORF	REV__ENST00000312358.11_1_2:220352985-220353325:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	444.2508850097656	2	443.77146	885.528367	0.050003	2.219E-05	-1.229	-0.00054539	-1.179	-0.0005232	443.7711741542234	31.288	0.46926	31.288	31.033	31.502	0					28	16	3	0	0	0	0.29634	1	5833	5833		34.102	1.9855	1	145270	+		43115	19907	24907	24908	52600	52600					0.08102375277144347
SLASAFFTAL	10	Unmodified	_SLASAFFTAL_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2584838867188	2	514.276575	1026.5386	0.22628	0.00011637	0.61865	0.00031816	0.84493	0.00043453	514.2766570448008	68.717	1.0888	68.698	68.429	69.518	-0.01915					87	38	3	0	0	0	0.34325	1	17511	17511		13.906	0.86358	1	720480			43116	8733	24908	24909	52601	52601					0.026389382117031346
SLASGKCAAYL	11	Unmodified	_SLASGKCAAYL_					0	0	0			REV__ENST00000377113.5_1_10:21783153-21783399:-|nuORF	REV__ENST00000377113.5_1_10:21783153-21783399:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2796020507812	2	542.278792	1082.54303	0.91466	0.000496	-0.24451	-0.00013259	0.67015	0.00036341	542.2785112759207	77.14	3.8403	77.109	76.682	80.523	-0.031334					356	145	4	0	0	0	0.23983	2	20073	20025;20073		27.629	1.0834	1	10104000	+		43117	20500	24909	24910	52602;52603	52603					0.0050607936295818945
SLASYGLALL	10	Unmodified	_SLASYGLALL_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.29229736328125	2	504.292225	1006.5699	0.48209	0.00024312	1.5036	0.00075824	1.9857	0.0010014	504.29190281037756	76.989	1.6431	76.989	76.501	78.144	0					139	60	3	0	0	0	0.26638	1	19843	19843		30.637	1.555	1	362780			43118	7019	24910	24911	52604	52604					0.06687511245809219
SLASYGLALL	10	Unmodified	_SLASYGLALL_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2924499511719	2	504.292225	1006.5699	0.32865	0.00016574	-0.27683	-0.0001396	0.051828	2.6136E-05	504.2919706910192	76.883	1.057	76.938	76.484	77.541	0.055405					62	37	2	0	0	0	0.10934	1	19849	19849		46.021	2.1627	1	343500			43119	7019	24910	24911	52605	52605					0.06687511245809219
SLATHRSTAK	10	Unmodified	_SLATHRSTAK_					0	0	0		ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.79052734375	2	536.298904	1070.58326	0.46977	0.00025194	-0.37945	-0.0002035	0.090321	4.8439E-05	536.2986884947793	27.067	0.60999	27.055	26.797	27.407	-0.01156					53	21	3	0	0	0	0.2811	1	4629	4629		22.736	2.2827	1	658610			43120	2416	24911	24912	52606	52606					0.050787620777555276
SLAVGDRLEV	10	Unmodified	_SLAVGDRLEV_					0	0	0		ENSG00000130775|ENST00000373921|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7799682617188	2	529.795663	1057.57677	0.39459	0.00020905	0.33584	0.00017793	0.73043	0.00038698	529.7955836834677	51.737	0.45861	51.747	51.506	51.964	0.0095634					36	16	3	0	0	0	0.21126	1	12144	12144		31.268	0.6318	1	797180			43121	3513	24912	24913	52607	52607					0.05028824126384279
SLAVSTKRDL	10	Unmodified	_SLAVSTKRDL_					0	0	0			REV__ENST00000467530.5_1_1:85960795-85960843:-|nuORF	REV__ENST00000467530.5_1_1:85960795-85960843:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.3197021484375	2	545.316763	1088.61897	0.44591	0.00024316	-0.03167	-1.727E-05	0.41424	0.00022589	545.3167857690152	80.248	3.793	80.313	79.277	83.07	0.065102					607	160	5	0	0	0	0.35637	1	21082	21082		11.495	1.3441	1	16780000	+		43122	21301	24913	24914	52608	52608					0.07820799534783873
SLCCSWWL	8	Unmodified	_SLCCSWWL_					0	0	0		ENST00000468435.6_1_9:6506184-6506223:+|nuORF	ENST00000468435.6_1_9:6506184-6506223:+|nuORF	ENST00000468435.6_1_9:6506184-6506223:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.22943115234375	2	499.217149	996.419744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.365	1	69.365	68.865	69.865	0								0	0	0	0.36336	1	17525	17525		8.5933	1.304	1				43123	10838	24914	24915	52609	52609					-0.07860875289156866
SLCEPIILAP	10	Unmodified	_SLCEPIILAP_					0	0	0		ENST00000559009.1_1_15:102312406-102316387:-|nuORF	ENST00000559009.1_1_15:102312406-102316387:-|nuORF	ENST00000559009.1_1_15:102312406-102316387:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.274658203125	2	528.293911	1054.57327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.196	1	80.169	79.669	80.669	-0.026825								0	0	0	0.34209	1	20816	20816		18.146	1.2041	1				43124	11881	24915	24916	52610	52610					0.04816438028160519
SLCIPEHPPTQ	11	Unmodified	_SLCIPEHPPTQ_					0	0	0			REV__ENST00000574657.1_1_17:44321001-44321457:+|nuORF	REV__ENST00000574657.1_1_17:44321001-44321457:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.3011474609375	2	611.300255	1220.58596	0.18757	0.00011466	0.44657	0.00027299	0.63414	0.00038765	611.3005354213235	59.522	0.95257	59.522	58.891	59.844	0					43	33	2	0	0	0	0.43149	1	14478	14478		7.1017	2.5729	1	165470	+		43125	22431	24916	24917	52611	52611					-0.015511505796212077
SLCIPEHPPTQ	11	Unmodified	_SLCIPEHPPTQ_					0	0	0			REV__ENST00000574657.1_1_17:44321001-44321457:+|nuORF	REV__ENST00000574657.1_1_17:44321001-44321457:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.8024291992188	2	611.300255	1220.58596	0.39738	0.00024292	0.0074135	4.5319E-06	0.4048	0.00024745	611.3001645621048	59.561	0.81943	59.55	58.92	59.739	-0.011486					49	28	2	0	0	0	0.45367	1	14538	14538		4.1895	0.60244	1	193150	+		43126	22431	24916	24917	52612	52612					-0.015511505796212077
SLCIPEHPPTQ	11	Unmodified	_SLCIPEHPPTQ_					0	0	0			REV__ENST00000574657.1_1_17:44321001-44321457:+|nuORF	REV__ENST00000574657.1_1_17:44321001-44321457:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.30029296875	2	611.300255	1220.58596	0.14236	8.7024E-05	-0.33306	-0.0002036	-0.1907	-0.00011658	611.2998881259973	59.912	0.61015	59.9	59.714	60.324	-0.011486					29	21	2	0	0	0	0.43149	1	14644	14644		7.1017	1.3699	1	308370	+		43127	22431	24916	24917	52613	52613					-0.015511505796212077
SLCRCLDRVAK	11	Unmodified	_SLCRCLDRVAK_					0	0	0			REV__ENST00000497613.2_1_8:145654528-145657901:-|nuORF	REV__ENST00000497613.2_1_8:145654528-145657901:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5700988769531	3	421.893525	1262.65875	0.052407	2.211E-05	0.15162	6.3968E-05	0.20403	8.6079E-05	421.89383815541686	30.167	0.50273	30.167	29.945	30.448	0					33	17	3	0	0	0	0.33236	1	5438	5438		4.4062	0	1	80966	+		43128	16924	24917	24918	52614	52614					0.037922799421494346
SLCREMDEQIR	11	Unmodified	_SLCREMDEQIR_					0	0	0		ENST00000600996.1_1_19:42012510-42012810:+|nuORF	ENST00000600996.1_1_19:42012510-42012810:+|nuORF	ENST00000600996.1_1_19:42012510-42012810:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.6003723144531	3	460.551716	1378.63332	-0.044359	-2.043E-05	-1.7648	-0.00081279	-1.8092	-0.00083322	460.5510019055455	26.664	0.68347	26.664	26.296	26.979	0					56	23	3	0	0	0	0.33263	1	4465	4465		2.084	0	1	136270			43129	12255	24918	24919	52615	52615					-0.040852393709428725
SLCRTKEV	8	Unmodified	_SLCRTKEV_					0	0	0		ENST00000312561.8_2_12:32112396-32113780:+|nuORF	ENST00000312561.8_2_12:32112396-32113780:+|nuORF	ENST00000312561.8_2_12:32112396-32113780:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.23638916015625	2	468.252577	934.490601	0.29092	0.00013622	1.1906	0.00055752	1.4816	0.00069375	468.25330627689425	34.063	0.77175	34.063	33.7	34.472	0					37	27	2	0	0	0	0.4354	1	6781	6781		10.824	1.4765	1	175300			43130	9323	24919	24920	52616	52616					0.02073541020013181
SLCVTVTAL	9	Unmodified	_SLCVTVTAL_					0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7518310546875	2	453.751879	905.489204	0.25033	0.00011359	-0.34789	-0.00015785	-0.097552	-4.4264E-05	453.75165446524113	49.604	0.57221	49.604	49.351	49.923	0					36	20	2	0	0	0	0.044952	1	11479	11479		54.774	6.4277	1	308750	+		43131	14478	24920	24921	52617	52617					0.03267906931239395
SLCWESRPRP	10	Unmodified	_SLCWESRPRP_					0	0	0		ENST00000272102.9_1_1:228285986-228286067:+|nuORF	ENST00000272102.9_1_1:228285986-228286067:+|nuORF	ENST00000272102.9_1_1:228285986-228286067:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.55535888671875	3	410.873118	1229.59753	-0.085293	-3.5044E-05	-2.1669	-0.00089033	-2.2522	-0.00092538	410.87169594743557	29.512	0.48995	29.525	29.39	29.88	0.013475					31	16	3	0	0	0	0.31942	1	5341	5341		6.1918	0.89496	1	76423			43132	9085	24921	24922	52618	52618					-0.008089087656117044
SLDALKEECVT	11	Unmodified	_SLDALKEECVT_					0	0	0			REV__ENSG00000120860|ENST00000240079|WASHC3	REV__ENSG00000120860|ENST00000240079|WASHC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.7684936523438	2	604.297378	1206.5802	0.089192	5.3899E-05	0.87234	0.00052715	0.96153	0.00058105	604.2979426490731	61.601	1.4075	61.592	61.297	62.704	-0.0087509					163	51	4	0	0	0	0.30294	1	15097	15097		14.405	0	1	953360	+		43133	15097	24922	24923	52619	52619					-0.014822938819406772
SLDCLFHHI	9	Unmodified	_SLDCLFHHI_					0	0	0			REV__ENSG00000171496|ENST00000641027|OR1L8	REV__ENSG00000171496|ENST00000641027|OR1L8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2340087890625	2	542.765852	1083.51715	0.40146	0.0002179	2.4769	0.0013444	2.8784	0.0015623	542.7674193915554	19.908	0.45826	19.908	19.655	20.113	0					29	16	3	0	0	0	0.25202	1	2384	2384		10.824	0	1	58741	+		43134	17644	24923	24924	52620	52620					-0.021267700886483
SLDCLFHHI	9	Unmodified	_SLDCLFHHI_					0	0	0			REV__ENSG00000171496|ENST00000641027|OR1L8	REV__ENSG00000171496|ENST00000641027|OR1L8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	542.765852	1083.51715	0.78235	0.00042463	2.7273	0.0014803	3.5097	0.0019049	542.7673052525126	19.999	0.47009	19.943	19.705	20.175	-0.055693	-0.023925	0.00021415	NaN	10.824	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90584	+		43135	17644	24923	24924							-0.021267700886483
SLDEEAEEV	9	Unmodified	_SLDEEAEEV_					0	0	0			REV__nc|ENSG00000188554|Q14596-2|NBR1	REV__nc|ENSG00000188554|Q14596-2|NBR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8319091796875	2	510.722027	1019.4295	0.47967	0.00024498	0.3021	0.00015429	0.78177	0.00039927	510.72192341958936	66.065	0.46629	66.149	65.888	66.354	0.083832					21	16	2	0	0	0	0.25066	1	16487	16487		11.64	3.7301	1	138310	+		43136	18556	24924	24925	52621	52621					-0.07943737269079065
SLDEEAEEV	9	Unmodified	_SLDEEAEEV_					0	0	0			REV__nc|ENSG00000188554|Q14596-2|NBR1	REV__nc|ENSG00000188554|Q14596-2|NBR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.83184814453125	2	510.722027	1019.4295	0.29942	0.00015292	0.41093	0.00020987	0.71034	0.00036279	510.7220095342743	66.172	0.40947	66.159	65.97	66.379	-0.013588					21	14	2	0	0	0	0.2451	1	16519	16519		15.847	4.2069	1	154710	+		43137	18556	24924	24925	52622	52622					-0.07943737269079065
SLDEKGLTV	9	Unmodified	_SLDEKGLTV_					0	0	0			REV__ENSG00000067992|ENST00000379162|PDK3	REV__ENSG00000067992|ENST00000379162|PDK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2640380859375	2	481.263665	960.512776	0.31413	0.00015118	0.3418	0.0001645	0.65593	0.00031568	481.26370558530766	56.849	0.76087	56.928	56.575	57.336	0.078674					39	28	2	0	0	0	0.079752	1	13705	13705		41.84	0	1	477280	+		43138	13697	24925	24926	52623	52623					0.03094043969440463
SLDEKGLTV	9	Unmodified	_SLDEKGLTV_					0	0	0			REV__ENSG00000067992|ENST00000379162|PDK3	REV__ENSG00000067992|ENST00000379162|PDK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	481.263665	960.512776	0.30224	0.00014546	0.0097394	4.6872E-06	0.31198	0.00015014	481.2635515401597	56.925	0.58604	56.925	56.66	57.246	0	0.0078193	-3.2973E-05	NaN	41.84	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	457980	+		43139	13697	24925	24926							0.03094043969440463
SLDEKGLTV	9	Unmodified	_SLDEKGLTV_					0	0	0			REV__ENSG00000067992|ENST00000379162|PDK3	REV__ENSG00000067992|ENST00000379162|PDK3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	481.263665	960.512776	0.31413	0.00015118	0.3418	0.0001645	0.65593	0.00031568	481.26370558530766	56.849	0.76087	56.928	56.575	57.336	0.078674	0.011053	0.00028665	NaN	41.84	39	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	477280	+		43140	13697	24925	24926							0.03094043969440463
SLDEKGLTV	9	Unmodified	_SLDEKGLTV_					0	0	0			REV__ENSG00000067992|ENST00000379162|PDK3	REV__ENSG00000067992|ENST00000379162|PDK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	481.263665	960.512776	0.5419	0.0002608	-0.16561	-7.9702E-05	0.37629	0.0001811	481.26349300116254	56.917	0.49517	56.898	56.7	57.196	-0.019077	-0.018873	-0.00020175	NaN	41.84	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	527530	+		43141	13697	24925	24926							0.03094043969440463
SLDEPQSPPQ	10	Unmodified	_SLDEPQSPPQ_					0	0	0			REV__PNN|p.I691Tfs*7|1|0.09|ENSG00000100941|chr14:39181780-39181781|-/CTCTCAC|frameshift_variant	REV__PNN|p.I691Tfs*7|1|0.09|ENSG00000100941|chr14:39181780-39181781|-/CTCTCAC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.27734375	2	549.259111	1096.50367	0.086835	4.7695E-05	-4.0464	-0.0022225	-3.9596	-0.0021748	549.2573494319935	13.977	0.17654	13.977	13.847	14.024	0					8	5	2	0	0	0	0.26638	1	589	589		30.637	8.8899	1	49894	+		43142	14237	24926	24927	52624	52624					-0.04072349386888163
SLDEPQSPPQ	10	Unmodified	_SLDEPQSPPQ_					0	0	0			REV__PNN|p.I691Tfs*7|1|0.09|ENSG00000100941|chr14:39181780-39181781|-/CTCTCAC|frameshift_variant	REV__PNN|p.I691Tfs*7|1|0.09|ENSG00000100941|chr14:39181780-39181781|-/CTCTCAC|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	549.259111	1096.50367	0.13234	7.2692E-05	-3.9086	-0.0021468	-3.7763	-0.0020742	549.2572882678743	14.125	0.17611	14.02	13.873	14.049	-0.10466	0.034314	-0.0003306	NaN	24.021	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56708	+		43143	14237	24926	24927							-0.04072349386888163
SLDEPQSPPQ	10	Unmodified	_SLDEPQSPPQ_					0	0	0			REV__PNN|p.I691Tfs*7|1|0.09|ENSG00000100941|chr14:39181780-39181781|-/CTCTCAC|frameshift_variant	REV__PNN|p.I691Tfs*7|1|0.09|ENSG00000100941|chr14:39181780-39181781|-/CTCTCAC|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.259111	1096.50367	0.11245	6.1764E-05	-2.692	-0.0014786	-2.5796	-0.0014169	549.2579930844504	14.026	0.11809	13.96	13.889	14.007	-0.066068	-0.025644	0.0010058	NaN	24.021	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41347	+		43144	14237	24926	24927							-0.04072349386888163
SLDERRQLDGS	11	Unmodified	_SLDERRQLDGS_					0	0	0		MMRN2|p.A719Lfs*60|1|0.17|ENSG00000173269|chr10:86942629-86942630|-/AG|frameshift_variant;ENSG00000173269|ENST00000372027|MMRN2	MMRN2|p.A719Lfs*60|1|0.17|ENSG00000173269|chr10:86942629-86942630|-/AG|frameshift_variant	MMRN2|p.A719Lfs*60|1|0.17|ENSG00000173269|chr10:86942629-86942630|-/AG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.2602233886719	3	425.881107	1274.62149	-0.27765	-0.00011825	-2.5599	-0.0010902	-2.8376	-0.0012085	425.8803618416171	24.654	0.84032	24.623	24.314	25.154	-0.031408					41	28	2	0	0	0	0.33316	1	3965	3965		2.084	1.0125	1	179620			43145	6711	24927	24928	52625	52625					-0.0048339679822220205
SLDFLHQK	8	Unmodified	_SLDFLHQK_					0	0	0			REV__nc|ENSG00000131620|Q5XXA6-2|ANO1	REV__nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.29510498046875	2	494.266542	986.51853	0.56588	0.00027969	1.6328	0.00080704	2.1987	0.0010867	494.2675201958311	29.658	0.47994	29.658	29.465	29.945	0					22	16	2	0	0	0	0.3366	1	5308	5308		18.135	0	1	79538	+		43146	15525	24928	24929	52626	52626					0.024731872717666192
SLDFPLNV	8	Unmodified	_SLDFPLNV_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2776184082031	2	452.742368	903.470183	0.18586	8.4145E-05	1.1945	0.00054079	1.3803	0.00062493	452.7423380301896	70.075	0.85239	70.053	69.729	70.581	-0.022087					47	30	2	0	0	0	0.33293	1	17711	17711		14.838	0	1	171660			43147	8241	24929	24930	52627	52627					0.014586936318664812
SLDHNAYFIL	10	Unmodified	_SLDHNAYFIL_					0	0	0			REV__ENSG00000070731|ENST00000225276|ST6GALNAC2	REV__ENSG00000070731|ENST00000225276|ST6GALNAC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.3207397460938	2	596.803488	1191.59242	0.1888	0.00011268	0.81907	0.00048882	1.0079	0.0006015	596.8033405631536	29.449	1.1882	29.463	29.22	30.408	0.013474					92	40	3	0	0	0	0.32009	1	5213	5213		3.9444	0	1	493960	+		43148	13732	24930	24931	52628	52628					0.004291106434266112
SLDIMAAVVP	10	Unmodified	_SLDIMAAVVP_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3019104003906	2	508.27826	1014.54197	0.45386	0.00023069	-1.0749	-0.00054634	-0.62103	-0.00031566	508.27702048743885	48.503	0.13012	48.546	48.43	48.56	0.04332					6	4	2	0	0	0	0.31051	1	11083	11083		11.64	0.81637	1	96326			43149	7784;12506	24931	24932	52629	52629					0.035278649940664764
SLDPPEHL	8	Unmodified	_SLDPPEHL_					0	0	0		ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7922668457031	2	454.229625	906.444697	0.66814	0.00030349	-0.042226	-1.918E-05	0.62591	0.00028431	454.2295719832934	50.65	0.27044	50.695	50.549	50.82	0.044891					14	9	2	0	0	0	0.31934	1	11780	11780		7.9102	0	1	148950			43150	4961	24932	24933	52630	52630					-0.012267808905676247
SLDQMVLEA	9	Unmodified	_SLDQMVLEA_					0	0	0		ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.266357421875	2	503.2497	1004.48485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.827	1	67.905	67.405	68.405	0.078041								0	0	0	0.19534	1	17044	17044		24.021	7.0783	1				43151	7051	24933	24934	52631	52631					-0.01721602282304957
SLDQMVLEA	9	Unmodified	_SLDQMVLEA_					0	0	0		ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.26629638671875	2	503.2497	1004.48485	0.31822	0.00016014	0.44157	0.00022222	0.75979	0.00038236	503.2485276357032	67.935	0.23218	67.919	67.785	68.017	-0.016296					10	7	2	0	0	0	0.15219	1	17071	17071		30.637	0	1	56098			43152	7051	24933	24934	52632	52632					-0.01721602282304957
SLDRIIKLS	9	Unmodified	_SLDRIIKLS_					0	0	0			REV__FAM186A|p.E1748Rfs*31|1|0.34|ENSG00000185958|chr12:50351591-50351591|A/-|frameshift_variant	REV__FAM186A|p.E1748Rfs*31|1|0.34|ENSG00000185958|chr12:50351591-50351591|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2590942382812	2	522.824224	1043.63389	0.40181	0.00021008	1.2092	0.00063219	1.611	0.00084227	522.8249571212435	24.198	0.38796	24.125	23.879	24.267	-0.072559					19	12	2	0	0	0	0.26031	1	3659	3659		3.5965	0	1	44980	+		43153	18424	24934	24935	52633	52633					0.11382291402765077
SLDRLHKVK	9	Unmodified	_SLDRLHKVK_					0	0	0		ENSG00000171853|ENST00000324266|TRAPPC12;ENST00000462983.5_1_2:3447569-3464471:+|nuORF;ENST00000479897.5_1_2:3447569-3469487:+|nuORF;ENST00000469147.5_1_2:3428415-3471239:+|nuORF	ENSG00000171853|ENST00000324266|TRAPPC12	ENSG00000171853|ENST00000324266|TRAPPC12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7793579101562	2	548.33529	1094.65603	0.82408	0.00045187	-0.88178	-0.00048351	-0.057695	-3.1636E-05	548.3344875031668	37.288	0.52106	37.288	37.039	37.56	0					46	18	3	0	0	0	0.2451	1	7714	7714		15.847	4.2069	1	587080			43154	6585	24935	24936	52634	52634					0.11248515871170639
SLDRQMGI	8	Unmodified	_SLDRQMGI_					0	0	0			REV__ENSG00000106086|ENST00000449726|PLEKHA8;REV__nc|ENSG00000293316|O95397|PLEKHA8P1	REV__ENSG00000106086|ENST00000449726|PLEKHA8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.6024169921875	2	460.236927	918.459301	-0.11658	-5.3655E-05	0.50737	0.00023351	0.39079	0.00017986	460.2370108027879	18.574	0.61983	18.574	18.332	18.952	0					33	21	2	0	0	0	0.34313	1	1935	1935		6.7232	2.3939	1	66784	+		43155	14509;19555	24936	24937	52635	52635					-0.003190320140561198
SLDRQMGI	8	Unmodified	_SLDRQMGI_					0	0	0			REV__ENSG00000106086|ENST00000449726|PLEKHA8;REV__nc|ENSG00000293316|O95397|PLEKHA8P1	REV__ENSG00000106086|ENST00000449726|PLEKHA8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	460.236927	918.459301	-0.097898	-4.5056E-05	0.49829	0.00022933	0.40039	0.00018428	460.2370402837415	18.746	0.68048	18.628	18.295	18.975	-0.11739	0.011345	-0.00022334	NaN	6.7232	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60882	+		43156	14509;19555	24936	24937							-0.003190320140561198
SLDVPPLD	8	Unmodified	_SLDVPPLD_					0	0	0			REV__ENSG00000115919|ENST00000264170|KYNU;REV__nc|ENSG00000115919|Q16719-2|KYNU	REV__ENSG00000115919|ENST00000264170|KYNU	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2342529296875	2	428.226551	854.438549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.263	1	62.36	61.86	62.86	0.096985								0	0	0	0.32762	1	15343	15343		24.674	5.2349	1		+		43157	14902;22962	24937	24938	52636	52636					0.005507008779090938
SLEDEKNK	8	Unmodified	_SLEDEKNK_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.E6206Gfs*23|1|0.69|ENSG00000183091|chr2:151505500-151505500|T/-|frameshift_variant;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;NEB|p.K4379*|1|0.19|ENSG00000183091|chr2:151565739-151565740|-/A|frameshift_variant	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7434997558594	2	481.743096	961.47164	0.4624	0.00022276	-0.6052	-0.00029155	-0.1428	-6.8793E-05	481.7433282310207	20.865	0.93144	20.812	20.355	21.286	-0.052912					76	32	5	0	0	0	0.35947	1	2639	2639		24.021	0	1	329460			43158	7345	24938	24939	52637	52637					-0.010637170700420029
SLEDLVRI	8	Unmodified	_SLEDLVRI_					0	0	0		ENST00000487195.5_1_13:46917522-46924493:-|nuORF;ENST00000441284.5_2_13:46917522-46942212:-|nuORF;nc|ENSG00000102445|Q9H714-6|RUBCNL;nc|ENSG00000102445|Q9H714-3|RUBCNL;ENSG00000102445|ENST00000429979|RUBCNL	ENST00000487195.5_1_13:46917522-46924493:-|nuORF	ENST00000487195.5_1_13:46917522-46924493:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7924499511719	2	472.7742	943.533846	-0.14542	-6.8753E-05	0.27891	0.00013186	0.13349	6.3109E-05	472.77427147969627	28.054	0.33321	28.055	27.935	28.268	0.0004673					15	11	2	0	0	0	0.34337	1	4823	4823		5.2307	0	1	64529			43159	1766	24939	24940	52638	52638					0.05982054068965681
SLEEDDEDLS	10	Unmodified	_SLEEDDEDLS_					0	0	0		ENST00000595304.1_1_19:44118348-44123759:-|nuORF;ENSG00000131116|ENST00000300811|ZNF428	ENST00000595304.1_1_19:44118348-44123759:-|nuORF	ENST00000595304.1_1_19:44118348-44123759:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3191528320312	2	576.232955	1150.45136	0.40544	0.00023363	-0.66032	-0.0003805	-0.25488	-0.00014687	576.2325933815403	44.922	0.4773	44.997	44.835	45.312	0.075047					32	17	3	0	0	0	0.31629	1	9979	9979		6.2058	0	1	240360			43160	3545	24940	24941	52639	52639					-0.11784977311162947
SLEGTEAQVFK	11	Unmodified	_SLEGTEAQVFK_					0	0	0		nc|ENSG00000177731|Q13045-2|FLII;nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII	nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-2|FLII	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.2805786132812	2	604.81151	1207.60847	0.61181	0.00037003	-0.57556	-0.0003481	0.036256	2.1928E-05	604.8114904818015	43.53	0.48913	43.607	43.401	43.89	0.077515					26	17	3	0	0	0	0.12644	1	9571	9571		99.864	74.873	1	451370			43161	7014	24941	24942	52640	52640					0.012967720896540413
SLEHLASKL	9	Unmodified	_SLEHLASKL_					0	0	0		ENSG00000198003|ENST00000356392|ODAD3;nc|ENSG00000198003|A5D8V7-2|ODAD3	ENSG00000198003|ENST00000356392|ODAD3	ENSG00000198003|ENST00000356392|ODAD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7691650390625	2	499.287474	996.560395	0.51917	0.00025921	1.5914	0.00079459	2.1106	0.0010538	499.78876892852617	64.658	0.72542	64.658	64.262	64.988	0					67	26	4	0	0	0	0.24311	1	16186	16186		16.942	1.1741	1	408890			43162	8024	24942	24943	52641	52641					0.061977429602734446
SLELGCPAAE	10	Unmodified	_SLELGCPAAE_					0	0	0			REV__ENST00000313080.8_1_17:74477595-74497465:-|nuORF	REV__ENST00000313080.8_1_17:74477595-74497465:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.24853515625	2	495.23405	988.453547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.674	1	20.622	20.122	21.122	-0.05291								0	0	0	0.37044	1	2608	2608		6.2058	0.97511	1		+		43163	19915	24943	24944	52642	52642					-0.04114175316408364
SLELGGKN	8	Unmodified	_SLELGGKN_					0	0	0		nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1;nc|ENSG00000118514|Q9H2A2-2|ALDH8A1;ENST00000349305.8_1_6:135239555-135263608:-|nuORF;ALDH8A1|p.P259R|1|0.27|ENSG00000118514|chr6:134932849-134932849|G/C|missense_variant	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.250732421875	2	409.224342	816.434132	-0.24141	-9.8791E-05	0.31044	0.00012704	0.069034	2.825E-05	409.2244527097086	15.038	0.65934	14.974	14.674	15.333	-0.064413					28	22	2	0	0	0	0.34337	1	829	829		5.2307	0	1	115100			43164	2832	24944	24945	52643	52643					0.0185723645500957
SLELSEKFRRL	11	Unmodified	_SLELSEKFRRL_					0	0	0		ENST00000480342.5_1_1:8525723-8716473:-|nuORF	ENST00000480342.5_1_1:8525723-8716473:-|nuORF	ENST00000480342.5_1_1:8525723-8716473:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.6003723144531	3	459.933143	1376.7776	0.014731	6.7754E-06	2.1115	0.00097116	2.1262	0.00097793	460.2682279588817	26.626	0.55862	26.588	26.263	26.822	-0.038671					28	19	2	0	0	0	0.33025	1	4467	4467		9.2438	3.0519	1	190360			43165	11006	24945	24946	52644	52644					0.10428093443033504
SLEMDDKRRK	10	Unmodified	_SLEMDDKRRK_					0	0	0			REV__nc|ENSG00000090857|Q8NCN5-2|PDPR	REV__nc|ENSG00000090857|Q8NCN5-2|PDPR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.860595703125	3	426.559199	1276.65577	-0.081397	-3.4721E-05	0.35644	0.00015204	0.27504	0.00011732	426.55921521230357	24.513	0.52461	24.441	24.207	24.732	-0.072559					45	17	3	0	0	0	0.31597	1	3828	3828		12.175	2.4105	1	197980	+		43166	14050	24946	24947	52645	52645					0.028507280889925823
SLEQLEPDYF	10	Unmodified	_SLEQLEPDYF_					0	0	0		ENSG00000147654|ENST00000337573|EBAG9;nc|ENSG00000147654|O00559-2|EBAG9	ENSG00000147654|ENST00000337573|EBAG9	ENSG00000147654|ENST00000337573|EBAG9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8833923339844	3	414.195921	1239.56593	-0.12618	-5.2265E-05	0.73383	0.00030395	0.60765	0.00025168	414.1963102747378	28.164	0.30531	28.164	27.963	28.268	0.00046921					16	10	2	0	0	0	0.3183	1	4878	4878		5.4027	0.87384	1	74201			43167	4779	24947	24948	52646	52646					-0.04426623038602884
SLEQLFRLG	9	Unmodified	_SLEQLFRLG_					0	0	0			REV__nc|ENSG00000290691|A6NGW2|STRCP1	REV__nc|ENSG00000290691|A6NGW2|STRCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2908325195312	2	531.800749	1061.58694	0.43117	0.00022929	1.483	0.00078865	1.9141	0.0010179	531.8016565664175	44.081	0.41286	44.081	43.819	44.232	0					26	14	3	0	0	0	0.21303	1	9751	9751		21.747	0	1	434280	+		43168	19189	24948	24949	52647	52647					0.058614318515992636
SLEQLFRLG	9	Unmodified	_SLEQLFRLG_					0	0	0			REV__nc|ENSG00000290691|A6NGW2|STRCP1	REV__nc|ENSG00000290691|A6NGW2|STRCP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.800749	1061.58694	0.43117	0.00022929	1.483	0.00078865	1.9141	0.0010179	531.8016565664175	44.081	0.41286	44.081	43.819	44.232	0	0.11369	2.6072E-05	NaN	21.747	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	434280	+		43169	19189	24948	24949							0.058614318515992636
SLERDREV	8	Unmodified	_SLERDREV_					0	0	0		FRMPD1|p.S1133Lfs*4|1|0.07|ENSG00000070601|chr9:37745429-37745430|-/TGTA|frameshift_variant;ENSG00000070601|ENST00000377765|FRMPD1	FRMPD1|p.S1133Lfs*4|1|0.07|ENSG00000070601|chr9:37745429-37745430|-/TGTA|frameshift_variant	FRMPD1|p.S1133Lfs*4|1|0.07|ENSG00000070601|chr9:37745429-37745430|-/TGTA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2477722167969	2	502.261988	1002.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.847	1	25.847	25.347	26.347	0								0	0	0	0.27792	1	4174	4174		32.305	7.6316	1				43170	932	24949	24950	52648	52648					0.008267939154279702
SLERDREV	8	Unmodified	_SLERDREV_					0	0	0		FRMPD1|p.S1133Lfs*4|1|0.07|ENSG00000070601|chr9:37745429-37745430|-/TGTA|frameshift_variant;ENSG00000070601|ENST00000377765|FRMPD1	FRMPD1|p.S1133Lfs*4|1|0.07|ENSG00000070601|chr9:37745429-37745430|-/TGTA|frameshift_variant	FRMPD1|p.S1133Lfs*4|1|0.07|ENSG00000070601|chr9:37745429-37745430|-/TGTA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2475891113281	2	502.261988	1002.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.817	1	25.778	25.278	26.278	-0.038671								0	0	0	0.34227	1	4169	4169		18.146	2.2992	1				43171	932	24949	24950	52649	52649					0.008267939154279702
SLERHFKG	8	Unmodified	_SLERHFKG_					0	0	0		nc|ENSG00000164087|Q8NBT0-2|POC1A;ENSG00000164087|ENST00000296484|POC1A	nc|ENSG00000164087|Q8NBT0-2|POC1A	nc|ENSG00000164087|Q8NBT0-2|POC1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.8136901855469	2	487.264333	972.514114	0.41036	0.00019995	-2.2479	-0.0010953	-1.8375	-0.00089537	487.26345642713994	26.914	0.67738	26.903	26.483	27.16	-0.011562					36	23	2	0	0	0	0.34218	1	4535	4535		2.3027	0	1	69598			43172	5786	24950	24951	52650	52650					0.02675722848857731
SLERNKFYSF	10	Unmodified	_SLERNKFYSF_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8880920410156	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.238	1	33.238	32.738	33.738	0								0	0	0	0.36922	1	6425	6425		3.5871	0	1				43173	818	24951	24952	52651	52651					0.0072018456346540916
SLERNKFYSF	10	Unmodified	_SLERNKFYSF_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.88818359375	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.101	1	33.156	32.656	33.656	0.055309								0	0	0	0.37581	1	6383	6383		1.9064	0	1				43174	818	24951	24952	52652	52652					0.0072018456346540916
SLERNKFYSF	10	Unmodified	_SLERNKFYSF_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8876037597656	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.612	1	34.688	34.188	35.188	0.075306								0	0	0	0.37157	1	6844	6844		5.4027	2.7715	1				43175	818	24951	24952	52653	52653					0.0072018456346540916
SLERPELDS	9	Unmodified	_SLERPELDS_					0	0	0			REV__nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	REV__nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2695922851562	2	523.261653	1044.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.137	1	45.137	44.637	45.637	0								0	0	0	0.18053	1	10064	10064		27.629	4.4804	1		+		43176	19288	24952	24953	52654	52654					-0.011720455242993921
SLESLPLLEPF	11	Unmodified	_SLESLPLLEPF_					0	0	0			REV__ENSG00000024048|ENST00000372901|UBR2	REV__ENSG00000024048|ENST00000372901|UBR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8836669921875	3	415.563945	1243.67001	-0.09669	-4.0181E-05	3.6415	0.0015133	3.5448	0.0014731	415.56571993029274	28.365	0.086567	28.366	28.294	28.38	0.0004673					4	2	2	0	0	0	0.329	1	4921	4921		2.6312	0.19645	1	22472	+		43177	13477	24953	24954	52655	52655					0.05791703788918312
SLESRWTELL	10	Unmodified	_SLESRWTELL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.23480224609375	3	411.88731	1232.6401	0.2448	0.00010083	-0.69688	-0.00028704	-0.45208	-0.00018621	411.88703317924205	38.512	0.48747	38.603	38.373	38.861	0.090881					32	17	3	0	0	0	0.31538	1	7991	7991		3.3196	0	1	162280			43178	3332;12691	24954	24955	52656	52656					0.03308764843609424
SLESVLAKLL	10	Unmodified	_SLESVLAKLL_					0	0	0			REV__ENSG00000197948|ENST00000435817|FCHSD1	REV__ENSG00000197948|ENST00000435817|FCHSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2684326171875	2	536.834257	1071.65396	0.35887	0.00019266	0.63251	0.00033955	0.99138	0.00053221	536.8347528288803	51.534	0.35115	51.581	51.347	51.699	0.046574					20	12	2	0	0	0	0.24708	1	12016	12016		29.082	13.234	1	309690	+		43179	18782	24955	24956	52657	52657					0.12100042342717643
SLETVYLER	9	Unmodified	_SLETVYLER_					0	0	0		nc|ENSG00000115685|Q15435-2|PPP1R7;ENSG00000115685|ENST00000234038|PPP1R7	nc|ENSG00000115685|Q15435-2|PPP1R7	nc|ENSG00000115685|Q15435-2|PPP1R7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2953491210938	2	555.295496	1108.57644	0.46738	0.00025953	-0.96233	-0.00053438	-0.49495	-0.00027484	555.2950489831691	45.071	0.56192	45.139	44.922	45.484	0.068569					54	19	3	0	0	0	0.023967	1	10061	10061		62.573	8.7399	1	1196500			43180	2670	24956	24957	52658	52658					0.026494044065202615
SLETVYLER	9	Unmodified	_SLETVYLER_					0	0	0		nc|ENSG00000115685|Q15435-2|PPP1R7;ENSG00000115685|ENST00000234038|PPP1R7	nc|ENSG00000115685|Q15435-2|PPP1R7	nc|ENSG00000115685|Q15435-2|PPP1R7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2952880859375	2	555.295496	1108.57644	0.37291	0.00020708	-0.86793	-0.00048196	-0.49502	-0.00027488	555.2950950557716	45.12	0.6154	45.195	44.911	45.526	0.075047					59	22	3	0	0	0	0.023967	1	10060	10060		62.573	8.7399	1	944520			43181	2670	24956	24957	52659	52659					0.026494044065202615
SLEVHRLERL	10	Unmodified	_SLEVHRLERL_					0	0	0		ENSG00000250673|ENST00000623665|REELD1	ENSG00000250673|ENST00000623665|REELD1	ENSG00000250673|ENST00000623665|REELD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.9204406738281	3	417.910449	1250.70952	0.072427	3.0268E-05	-0.25478	-0.00010648	-0.18236	-7.6209E-05	417.91028594124447	40.681	0.64388	40.781	40.479	41.123	0.099407					53	23	3	0	0	0	0.31969	1	8612	8612		1.5923	0.72791	1	776940			43182	8594	24957	24958	52660	52660					0.0941926858304214
SLFAFVRAY	9	Unmodified	_SLFAFVRAY_					0	0	0			REV__ENST00000283172.8_1_12:65088777-65089044:+|nuORF	REV__ENST00000283172.8_1_12:65088777-65089044:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2955322265625	2	537.292559	1072.57057	0.47864	0.00025717	0.34569	0.00018574	0.82434	0.00044291	537.292748853815	67.979	2.931	67.979	66.964	69.895	0					241	105	5	0	0	0	0.30166	1	16886	16886		8.5933	0	1	2786800	+		43183	19723	24958	24959	52661	52661					0.0371835068551718
SLFAHWGQELS	11	Unmodified	_SLFAHWGQELS_					0	0	0		ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.8118896484375	2	637.811845	1273.60914	0.53281	0.00033983	-0.66409	-0.00042356	-0.13128	-8.3735E-05	637.8112735276122	85.826	2.0719	85.826	85.098	87.17	0					150	80	2	0	0	0	0.46819	1	22626	22626		2.2828	2.2828	1	396350			43184	2305	24959	24960	52662	52662					-0.016723884706152603
SLFAVRLLQTL	11	Unmodified	_SLFAVRLLQTL_					0	0	0		nc|ENSG00000176225|Q86VV8-4|RTTN;nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-2|RTTN;ENST00000581583.1_1_18:67834153-67872894:-|nuORF;RTTN|p.I720Sfs*22|1|0.17|ENSG00000176225|chr18:70149986-70149987|-/AC|frameshift_variant	nc|ENSG00000176225|Q86VV8-4|RTTN	nc|ENSG00000176225|Q86VV8-4|RTTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.9273986816406	3	420.927329	1259.76016	0.023198	9.7646E-06	0.086622	3.6462E-05	0.10982	4.6226E-05	420.92794431187883	35.473	3.0701	35.548	35.151	38.221	0.075306					343	111	6	0	0	0	0.25499	1	7363	7363		16.275	0	1	77029000			43185	6911	24960	24961	52663	52663					0.1406679790804901
SLFAVRLLQTL	11	Unmodified	_SLFAVRLLQTL_					0	0	0		nc|ENSG00000176225|Q86VV8-4|RTTN;nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-2|RTTN;ENST00000581583.1_1_18:67834153-67872894:-|nuORF;RTTN|p.I720Sfs*22|1|0.17|ENSG00000176225|chr18:70149986-70149987|-/AC|frameshift_variant	nc|ENSG00000176225|Q86VV8-4|RTTN	nc|ENSG00000176225|Q86VV8-4|RTTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.92742919921875	3	420.927329	1259.76016	-0.26442	-0.0001113	0.40162	0.00016905	0.1372	5.7753E-05	420.92808762773177	35.463	4.0169	35.548	35.124	39.141	0.085144					362	145	6	0	0	0	0.25499	1	7313	7313		16.275	1.4366	1	74898000			43186	6911	24960	24961	52664	52664					0.1406679790804901
SLFCWCTECR	10	Unmodified	_SLFCWCTECR_					0	0	0			REV__ENST00000368102.5_1_1:159804969-159805389:-|nuORF	REV__ENST00000368102.5_1_1:159804969-159805389:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.1888427734375	3	416.50505	1246.49332	0.22681	9.4466E-05	-0.032092	-1.3367E-05	0.19471	8.1099E-05	416.50450289588395	43.738	0.50656	43.815	43.567	44.074	0.077515					39	18	3	0	0	0	0.3994	1	9641	9641		3.5871	0.5148	1	165950	+		43187	20329	24961	24962	52665	52665					-0.12006694908995996
SLFCWCTECR	10	Unmodified	_SLFCWCTECR_					0	0	0			REV__ENST00000368102.5_1_1:159804969-159805389:-|nuORF	REV__ENST00000368102.5_1_1:159804969-159805389:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.1888122558594	3	416.50505	1246.49332	0.23686	9.8655E-05	-0.70413	-0.00029327	-0.46727	-0.00019462	416.50466285370055	43.764	0.47076	43.848	43.549	44.02	0.083996					25	17	2	0	0	0	0.32068	1	9638	9638		1.7423	0	1	213090	+		43188	20329	24961	24962	52666	52666					-0.12006694908995996
SLFDQLQEM	9	Unmodified	_SLFDQLQEM_					0	0	0			REV__ENST00000602395.1_1_10:22607528-22615407:+|nuORF	REV__ENST00000602395.1_1_10:22607528-22615407:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7966918945312	2	555.760432	1109.50631	0.4121	0.00022903	-0.11041	-6.1361E-05	0.30169	0.00016767	555.760036927508	49.673	0.38285	49.673	49.38	49.763	0					21	13	2	0	0	0	0.21538	1	11428	11428		26.268	11.43	1	169780	+		43189	21250	24962	24963	52667	52667					-0.04406217253608702
SLFDRQGFLK	10	Unmodified	_SLFDRQGFLK_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.2240295410156	3	404.224146	1209.65061	0.36509	0.00014758	-0.54207	-0.00021912	-0.17698	-7.1541E-05	404.22372966135475	50.661	0.64934	50.661	50.381	51.03	0					57	23	3	0	0	0	0.31745	1	11760	11760		5.0475	1.4605	1	1211100			43190	4030	24963	24964	52668	52668					0.054167922887017994
SLFDRQGFLK	10	Unmodified	_SLFDRQGFLK_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.83251953125	2	605.83258	1209.65061	0.93545	0.00056672	-0.93848	-0.00056856	-0.0030334	-1.8378E-06	605.8319524094416	50.64	0.57097	50.64	50.407	50.978	0					44	20	3	0	0	0	0.099422	1	11763	11763		60.899	60.899	1	601180			43191	4030	24963	24964	52669	52669					0.054167922887017994
SLFDRQGFLK	10	Unmodified	_SLFDRQGFLK_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2238464355469	3	404.224146	1209.65061	0.38133	0.00015414	-0.58342	-0.00023583	-0.20209	-8.1691E-05	404.2237014431655	50.737	0.64035	50.746	50.402	51.042	0.0095673					72	23	4	0	0	0	0.33436	1	11767	11767		15.538	4.6395	1	1199200			43192	4030	24963	24964	52670	52670					0.054167922887017994
SLFDRQGFLK	10	Unmodified	_SLFDRQGFLK_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.8323974609375	2	605.83258	1209.65061	0.82014	0.00049687	-0.55045	-0.00033348	0.26969	0.00016339	605.8321249155157	50.692	0.55857	50.707	50.489	51.047	0.014858					50	20	3	0	0	0	0.019496	1	11801	11801		73.196	48.205	1	531900			43193	4030	24963	24964	52671	52671					0.054167922887017994
SLFDRQGFLK	10	Unmodified	_SLFDRQGFLK_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	605.83258	1209.65061	0.99647	0.00060369	-0.95857	-0.00058073	0.037894	2.2957E-05	605.8319161420478	50.633	0.55072	50.678	50.433	50.983	0.044891	0.0031192	-0.00016621	NaN	73.196	48	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	561160			43194	4030	24963	24964							0.054167922887017994
SLFFFRPFFLR	11	Unmodified	_SLFFFRPFFLR_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12;REV__ENSG00000118997|ENST00000312428|DNAH7;REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.32373046875	3	492.943202	1475.80778	0.34422	0.00016968	0.85939	0.00042363	1.2036	0.00059331	492.94356552915986	24.774	1.017	24.774	24.279	25.296	0					87	34	4	0	0	0	0.33347	1	3950	3950		0.45452	0	1	232540	+		43195	17857;15026;16816	24964	24965	52672	52672					0.08890496898857236
SLFFILMVLR	10	Unmodified	_SLFFILMVLR_					0	0	0		nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8690795898438	2	619.87012	1237.72569	0.32312	0.00020029	-0.89828	-0.00055682	-0.57516	-0.00035653	619.8684087462731	93.756	0.61766	93.755	93.414	94.031	-0.00051117					65	45	2	0	0	0	0.39935	1	24975	24975		3.5965	0.31518	1	186880			43196	12958	24965	24966	52673	52673					0.11633258495589871
SLFFLFWSKL	10	Unmodified	_SLFFLFWSKL_					0	0	0		ENST00000466324.1_1_11:64444212-64481216:-|nuORF	ENST00000466324.1_1_11:64444212-64481216:-|nuORF	ENST00000466324.1_1_11:64444212-64481216:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.3600463867188	2	644.360442	1286.70633	0.57628	0.00037133	-0.16337	-0.00010527	0.41291	0.00026606	644.3601280945454	87.68	1.9284	87.68	86.703	88.632	0					172	91	3	0	0	0	0.40106	1	22906	22906		3.2813	0	1	500160			43197	10811	24966	24967	52674	52674					0.07444625476318834
SLFGFLYF	8	Unmodified	_SLFGFLYF_					0	0	0			REV__ENST00000468916.1_1_3:119367508-119379270:-|nuORF	REV__ENST00000468916.1_1_3:119367508-119379270:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7742614746094	2	497.257654	992.500755	0.1835	9.1246E-05	-4.2316	-0.0021042	-4.0481	-0.0020129	497.25466959212656	29.359	0.72989	29.372	28.984	29.714	0.013475					48	25	4	0	0	0	0.33995	1	5276	5276		15.768	0	1	193710	+		43198	15124	24967	24968	52675	52675					0.004204720169013854
SLFGGLFPR	9	Unmodified	_SLFGGLFPR_					0	0	0		ENSG00000170634|ENST00000607452|ACYP2	ENSG00000170634|ENST00000607452|ACYP2	ENSG00000170634|ENST00000607452|ACYP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2796325683594	2	497.279452	992.544351	0.32041	0.00015934	-0.95355	-0.00047418	-0.63314	-0.00031485	497.2787984850248	69.144	0.77845	69.144	68.812	69.59	0					51	27	2	0	0	0	0.0037772	1	17460	17460		96.111	42.278	1	733030			43199	6470	24968	24969	52676	52676					0.047780815140413324
SLFGGLFPR	9	Unmodified	_SLFGGLFPR_					0	0	0		ENSG00000170634|ENST00000607452|ACYP2	ENSG00000170634|ENST00000607452|ACYP2	ENSG00000170634|ENST00000607452|ACYP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.27886962890625	2	497.279452	992.544351	0.43477	0.0002162	-0.81659	-0.00040608	-0.38182	-0.00018987	497.2787953546011	69.126	1.0072	69.198	68.854	69.862	0.071938					53	35	2	0	0	0	0.016723	1	17495	17495		69.105	19.172	1	692440			43200	6470	24968	24969	52677	52677					0.047780815140413324
SLFGGLFPR	9	Unmodified	_SLFGGLFPR_					0	0	0		ENSG00000170634|ENST00000607452|ACYP2	ENSG00000170634|ENST00000607452|ACYP2	ENSG00000170634|ENST00000607452|ACYP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.27911376953125	2	497.279452	992.544351	0.29443	0.00014641	-0.6458	-0.00032114	-0.35137	-0.00017473	497.2789478835861	69.186	1.018	69.167	68.843	69.861	-0.019157					53	36	2	0	0	0	0.0042138	1	17497	17497		92.653	32.579	1	698790			43201	6470	24968	24969	52678	52678					0.047780815140413324
SLFLLNLAF	9	Unmodified	_SLFLLNLAF_					0	0	0		ENSG00000182885|ENST00000333493|ADGRG3	ENSG00000182885|ENST00000333493|ADGRG3	ENSG00000182885|ENST00000333493|ADGRG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2962646484375	2	519.305136	1036.59572	0.40066	0.00020806	0.33345	0.00017316	0.73411	0.00038122	519.3051861860071	68.118	0.70384	68.118	67.732	68.436	0					53	25	3	0	0	0	0.21303	1	17154	17154		21.747	4.8044	1	629400			43202	7330	24969	24970	52679	52679					0.07888405488074568
SLFLRTFLKGT	11	Unmodified	_SLFLRTFLKGT_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|46|1|sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|46|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8827514648438	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.091	1	95.091	94.591	95.591	0								0	0	0	0.36517	1	25380	25380		4.897	0	1		+		43203	22749	24970	24971	52680	52680					0.11490511390957181
SLFLRTFLKGT	11	Unmodified	_SLFLRTFLKGT_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|46|1|sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|46|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.88330078125	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.222	1	96.218	95.718	96.718	-0.0038147								0	0	0	0.36517	1	25727	25727		4.897	0	1		+		43204	22749	24970	24971	52681	52681					0.11490511390957181
SLFLSVREG	9	Unmodified	_SLFLSVREG_					0	0	0		nc|ENSG00000211779|A0A0B4J249|TRAV5	nc|ENSG00000211779|A0A0B4J249|TRAV5	nc|ENSG00000211779|A0A0B4J249|TRAV5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.263427734375	2	504.279649	1006.54475	0.56882	0.00028684	1.667	0.00084062	2.2358	0.0011275	504.27985380493953	66.119	0.49403	66.202	65.806	66.3	0.083832					19	17	2	0	0	0	0.24581	1	16463	16463		16.942	0	1	112370			43205	12928	24971	24972	52682	52682					0.04173456443231771
SLFMGLFLLSF	11	Unmodified	_SLFMGLFLLSF_					0	0	0			REV__ENSG00000147676|ENST00000614891|MAL2	REV__ENSG00000147676|ENST00000614891|MAL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2115478515625	3	425.566632	1273.67807	-1.1211	-0.00047709	4.3774	0.0018629	3.2563	0.0013858	425.5685896364986	35.098	0.13615	35.098	35.033	35.17	0					6	4	2	0	0	0	0.30789	1	7014	7014		13.519	0	1	95054	+		43206	16401	24972	24973	52683	52683					0.052175595047174284
SLFNHIYFK	9	Unmodified	_SLFNHIYFK_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.8114013671875	2	584.811116	1167.60768	0.32321	0.00018901	0.52502	0.00030704	0.84822	0.00049605	584.8113670698233	52.304	0.89757	52.355	52.009	52.907	0.050575					81	32	3	0	0	0	0.00078391	1	12246	12246		125.53	39.888	1	1665300			43207	562	24973	24974	52684	52684					0.030580222312664773
SLFNHIYFK	9	Unmodified	_SLFNHIYFK_					0	0	0		nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	nc|ENSG00000033627|Q93050-1|ATP6V0A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8111572265625	2	584.811116	1167.60768	0.26142	0.00015288	0.63298	0.00037018	0.89441	0.00052306	584.811377688423	52.597	0.90095	52.596	52.274	53.175	-0.00080872					81	32	3	0	0	0	0.0041491	1	12321	12321		93.166	37.663	1	1461200			43208	562	24973	24974	52685	52685					0.030580222312664773
SLFRRLFWTIA	11	Unmodified	_SLFRRLFWTIA_					0	0	0		ENST00000359276.8_1_X:16730679-16730763:-|nuORF	ENST00000359276.8_1_X:16730679-16730763:-|nuORF	ENST00000359276.8_1_X:16730679-16730763:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.9112243652344	3	470.60659	1408.79794	0.32694	0.00015386	0.007875	3.706E-06	0.33481	0.00015757	470.6064335415316	51.02	1.185	51.02	50.544	51.729	0					128	43	4	0	0	0	0.33263	1	12080	12080		0.92553	0	1	1284900			43209	9661	24974	24975	52686	52686					0.10989308893499583
SLFRSSSIL	9	Unmodified	_SLFRSSSIL_					0	0	0		ENST00000463365.1_1_1:161722216-161723087:+|nuORF;ENSG00000081721|ENST00000367943|DUSP12	ENST00000463365.1_1_1:161722216-161723087:+|nuORF	ENST00000463365.1_1_1:161722216-161723087:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.263671875	2	505.287474	1008.5604	0.55064	0.00027823	-2.1663	-0.0010946	-1.6157	-0.00081639	505.2861637403544	76.881	0.22108	76.849	76.709	76.93	-0.031334					11	8	2	0	0	0	0.24848	1	19799	19799		9.3831	3.6227	1	41476			43210	1186	24975	24976	52687	52687					0.056457429602915
SLFSGSFSK	9	Unmodified	_SLFSGSFSK_					0	0	0		ENST00000264716.8_1_2:28615973-28616156:+|nuORF	ENST00000264716.8_1_2:28615973-28616156:+|nuORF	ENST00000264716.8_1_2:28615973-28616156:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2454833984375	2	480.245275	958.475997	0.11337	5.4445E-05	0.27962	0.00013429	0.39299	0.00018873	480.2451975940039	46.126	0.54254	46.126	45.86	46.402	0					42	19	3	0	0	0	0.07944	1	10372	10372		41.956	0.11592	1	987830			43211	9031	24976	24977	52688	52688					-0.0049020785647826415
SLFSGSFSK	9	Unmodified	_SLFSGSFSK_					0	0	0		ENST00000264716.8_1_2:28615973-28616156:+|nuORF	ENST00000264716.8_1_2:28615973-28616156:+|nuORF	ENST00000264716.8_1_2:28615973-28616156:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2453918457031	2	480.245275	958.475997	0.081346	3.9066E-05	0.35723	0.00017156	0.43857	0.00021062	480.245245555768	45.845	0.56028	45.905	45.619	46.18	0.059834					43	19	3	0	0	0	0.12329	1	10275	10275		41.956	0.11592	1	1024300			43212	9031	24976	24977	52689	52689					-0.0049020785647826415
SLFSKYTN	8	Unmodified	_SLFSKYTN_					0	0	0		ENSG00000154415|ENST00000284601|PPP1R3A	ENSG00000154415|ENST00000284601|PPP1R3A	ENSG00000154415|ENST00000284601|PPP1R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.24542236328125	2	480.245275	958.475997	0.4544	0.00021822	-0.0095133	-4.5687E-06	0.44488	0.00021365	480.2451310042305	45.804	0.70889	45.869	45.57	46.279	0.065048					49	25	3	0	0	0	0.26862	1	10301	10301		34.402	3.1334	1	905600			43213	5127	24977	24978	52690	52690					-0.0049020785647826415
SLFSLEVAAN	10	Unmodified	_SLFSLEVAAN_					0	0	0			REV__ENSG00000136011|ENST00000388887|STAB2	REV__ENSG00000136011|ENST00000388887|STAB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7951049804688	2	525.776939	1049.53933	0.73915	0.00038863	-0.3151	-0.00016567	0.42405	0.00022296	525.7767286248419	48.296	0.63039	48.339	48.065	48.695	0.04332					56	23	3	0	0	0	0.22916	1	11097	11097		29.082	4.0906	1	4280200	+		43214	15779	24978	24979	52691	52691					0.016537328607682866
SLFSMSMAIK	10	Oxidation (M)	_SLFSM(Oxidation (M))SMAIK_		SLFSM(0.5)SM(0.5)AIK		SLFSM(0)SM(0)AIK	0	0	1			REV__ENSG00000141665|ENST00000419743|FBXO15	REV__ENSG00000141665|ENST00000419743|FBXO15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.782958984375	2	565.782853	1129.55115	0.35795	0.00020252	-0.62743	-0.00035499	-0.26948	-0.00015247	565.7826458632849	57.405	0.9591	57.405	57.116	58.075	0					66	34	3	0	0	0	0.093201	1	13841	13841		49.554	23.286	2	1406700	+		43215	16091	24979	24980	52692	52692		999;1000			-0.008441097119202823
SLFSMSMAIK	10	Oxidation (M)	_SLFSM(Oxidation (M))SMAIK_		SLFSM(0.5)SM(0.5)AIK		SLFSM(0)SM(0)AIK	0	0	1			REV__ENSG00000141665|ENST00000419743|FBXO15	REV__ENSG00000141665|ENST00000419743|FBXO15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.3193969726562	2	565.782853	1129.55115	0.39672	0.00022446	-0.76913	-0.00043516	-0.37241	-0.0002107	565.7825573025627	57.287	0.98003	57.373	57.104	58.084	0.085621					63	35	3	0	0	0	0.23216	1	13795	13795		41.956	19.219	2	1665100	+		43216	16091	24979	24980	52693	52693		999;1000			-0.008441097119202823
SLFSMSMAIK	10	Oxidation (M)	_SLFSM(Oxidation (M))SMAIK_		SLFSM(0.5)SM(0.5)AIK		SLFSM(0)SM(0)AIK	0	0	1			REV__ENSG00000141665|ENST00000419743|FBXO15	REV__ENSG00000141665|ENST00000419743|FBXO15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7825927734375	2	565.782853	1129.55115	0.12314	6.9672E-05	-0.86145	-0.00048739	-0.73831	-0.00041772	565.7827173426635	57.475	0.86002	57.458	57.117	57.977	-0.0172					77	31	4	0	0	0	0.093201	1	13856	13856		49.554	23.286	2	1622700	+		43217	16091	24979	24980	52694	52694		999;1000			-0.008441097119202823
SLFSNVVTK	9	Unmodified	_SLFSNVVTK_					0	0	0		ENST00000446622.5_1_2:216199652-216212358:+|nuORF;ENST00000467388.1_1_2:216203501-216211697:+|nuORF;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF	ENST00000446622.5_1_2:216199652-216212358:+|nuORF	ENST00000446622.5_1_2:216199652-216212358:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.81915283203125	2	497.782025	993.549496	0.56612	0.0002818	0.59847	0.00029791	1.1646	0.00057971	497.78233139419103	46.769	0.54444	46.769	46.54	47.084	0					28	18	2	0	0	0	0.19686	1	10619	10619		31.268	3.6395	1	451600			43218	10598	24980	24981	52695	52695					0.05246340585995313
SLFSNVVTK	9	Unmodified	_SLFSNVVTK_					0	0	0		ENST00000446622.5_1_2:216199652-216212358:+|nuORF;ENST00000467388.1_1_2:216203501-216211697:+|nuORF;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF	ENST00000446622.5_1_2:216199652-216212358:+|nuORF	ENST00000446622.5_1_2:216199652-216212358:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.81890869140625	2	497.782025	993.549496	0.57145	0.00028446	0.48254	0.0002402	1.054	0.00052466	497.7823328177518	46.634	0.5148	46.686	46.44	46.955	0.052574					36	18	3	0	0	0	0.23749	1	10570	10570		20.415	3.3016	1	493000			43219	10598	24980	24981	52696	52696					0.05246340585995313
SLFSNVVTK	9	Unmodified	_SLFSNVVTK_					0	0	0		ENST00000446622.5_1_2:216199652-216212358:+|nuORF;ENST00000467388.1_1_2:216203501-216211697:+|nuORF;nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF	ENST00000446622.5_1_2:216199652-216212358:+|nuORF	ENST00000446622.5_1_2:216199652-216212358:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.8188171386719	2	497.782025	993.549496	0.41124	0.00020471	0.6314	0.0003143	1.0426	0.00051901	497.7825873466721	46.68	0.54062	46.734	46.466	47.006	0.054371					27	18	2	0	0	0	0.11755	1	10556	10556		39.213	15.423	1	607720			43220	10598	24980	24981	52697	52697					0.05246340585995313
SLFSPKLVF	9	Unmodified	_SLFSPKLVF_					0	0	0		ENST00000278071.6_1_10:106073096-106073477:-|nuORF	ENST00000278071.6_1_10:106073096-106073477:-|nuORF	ENST00000278071.6_1_10:106073096-106073477:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2965698242188	2	519.305136	1036.59572	0.35651	0.00018514	0.18953	9.8424E-05	0.54604	0.00028356	519.3051369286852	68.046	0.67355	68.03	67.7	68.373	-0.016296					52	23	3	0	0	0	0.23007	1	17121	17121		19.257	1.1106	1	641190			43221	9106	24981	24982	52698	52698					0.07888405488097305
SLFSRLFGK	9	Unmodified	_SLFSRLFGK_					0	0	0		ENSG00000168374|ENST00000303436|ARF4;ENST00000489843.1_1_3:57563094-57582900:-|nuORF;ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF	ENSG00000168374|ENST00000303436|ARF4	ENSG00000168374|ENST00000303436|ARF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.281494140625	2	527.805834	1053.59712	0.52748	0.00027841	-0.28662	-0.00015128	0.24086	0.00012713	527.8054661585619	60.438	0.21531	60.438	60.305	60.521	0					11	7	2	0	0	0	0.21026	1	14752	14752		22.658	9.1502	1	351680			43222	6271	24982	24983	52699	52699					0.07246039576853036
SLFSSKLST	9	Unmodified	_SLFSSKLST_					0	0	0		nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.2663269042969	2	485.266207	968.517862	0.60575	0.00029395	-0.40798	-0.00019798	0.19777	9.597E-05	485.26606024612556	37.23	1.8973	37.23	36.673	38.571	0					184	67	5	0	0	0	0.079752	2	7693	7595;7693		41.84	7.4379	1	13799000			43223	738	24983	24984	52700;52701	52701					0.032343478320512986
SLFSSKLST	9	Unmodified	_SLFSSKLST_					0	0	0		nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2664794921875	2	485.266207	968.517862	0.46657	0.00022641	-0.21771	-0.00010565	0.24885	0.00012076	485.2661424210842	37.088	2.2077	37.181	36.279	38.486	0.093014					200	79	5	0	0	0	0.057976	1	7596	7596		49.933	0	1	15537000			43224	738	24983	24984	52702	52702					0.032343478320512986
SLFTTPTI	8	Unmodified	_SLFTTPTI_					0	0	0			REV__ADGRG4|p.K2380Nfs*2|1|0.45|ENSG00000156920|chrX:136359446-136359446|A/-|frameshift_variant	REV__ADGRG4|p.K2380Nfs*2|1|0.45|ENSG00000156920|chrX:136359446-136359446|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.73443603515625	2	440.244744	878.474934	-0.010583	-4.659E-06	0.18572	8.1761E-05	0.17513	7.7102E-05	440.244648372443	69.836	0.63338	69.902	69.609	70.242	0.066048					30	22	2	0	0	0	0.27422	1	17632	17632		40.449	8.3316	1	67045	+		43225	13084	24984	24985	52703	52703					0.030835777746119675
SLFTTPTI	8	Unmodified	_SLFTTPTI_					0	0	0			REV__ADGRG4|p.K2380Nfs*2|1|0.45|ENSG00000156920|chrX:136359446-136359446|A/-|frameshift_variant	REV__ADGRG4|p.K2380Nfs*2|1|0.45|ENSG00000156920|chrX:136359446-136359446|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	440.244744	878.474934	0.11166	4.9159E-05	-0.27513	-0.00012113	-0.16347	-7.1967E-05	440.24433720152626	69.949	0.7401	69.927	69.564	70.304	-0.022087	0.012546	-0.00035466	NaN	40.449	35	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76309	+		43226	13084	24984	24985							0.030835777746119675
SLFVFFNHPK	10	Unmodified	_SLFVFFNHPK_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000523646.1_1_8:109240494-109241379:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.284912109375	2	618.332216	1234.64988	0.16385	0.00010132	0.32927	0.0002036	0.49312	0.00030491	618.3324417967389	57.707	0.48146	57.793	57.63	58.112	0.085621					25	17	2	0	0	0	0.31609	1	13909	13909		19.362	12.639	1	238470			43227	1887	24985	24986	52704	52704					0.04193997639663394
SLFVFFNHPK	10	Unmodified	_SLFVFFNHPK_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000523646.1_1_8:109240494-109241379:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	618.332216	1234.64988	0.20986	0.00012976	0.0035424	2.1904E-06	0.2134	0.00013195	618.3321043438374	57.938	0.44724	57.938	57.768	58.216	0	0.016434	-7.7525E-05	NaN	19.362	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221190			43228	1887	24985	24986							0.04193997639663394
SLFVFFNHPK	10	Unmodified	_SLFVFFNHPK_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000523646.1_1_8:109240494-109241379:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	618.332216	1234.64988	0.38459	0.0002378	-0.23972	-0.00014823	0.14487	8.9577E-05	618.332041967617	58.051	0.42631	58.034	57.874	58.3	-0.0172	0.11243	-0.00037836	NaN	19.362	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261340			43229	1887	24985	24986							0.04193997639663394
SLFWMLEV	8	Unmodified	_SLFWMLEV_					0	0	0		nc|ENSG00000102181|Q8TCZ2-4|CD99L2	nc|ENSG00000102181|Q8TCZ2-4|CD99L2	nc|ENSG00000102181|Q8TCZ2-4|CD99L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2794189453125	2	512.762246	1023.50994	0.42045	0.00021559	3.8907	0.001995	4.3112	0.0022106	513.2663345232008	74.588	0.31348	74.557	74.473	74.787	-0.030655					15	10	2	0	0	0	0.28969	1	19122	19122		36.044	3.7387	1	440310			43230	12624	24986	24987	52705	52705					-0.0008750268907533609
SLFWMTLTV	9	Unmodified	_SLFWMTLTV_					0	0	0		ENST00000486187.5_1_10:43090126-43133998:-|nuORF	ENST00000486187.5_1_10:43090126-43133998:-|nuORF	ENST00000486187.5_1_10:43090126-43133998:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2977905273438	2	549.288628	1096.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.983	1	70.049	69.549	70.549	0.066048								0	0	0	0.15265	1	17708	17708		34.102	6.4736	1				43231	11103	24987	24988	52706	52706					0.01828455373720317
SLFWMTLTV	9	Unmodified	_SLFWMTLTV_					0	0	0		ENST00000486187.5_1_10:43090126-43133998:-|nuORF	ENST00000486187.5_1_10:43090126-43133998:-|nuORF	ENST00000486187.5_1_10:43090126-43133998:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.297607421875	2	549.288628	1096.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.143	1	70.209	69.709	70.709	0.066048								0	0	0	0.12743	1	17757	17757		39.957	8.689	1				43232	11103	24987	24988	52707	52707					0.01828455373720317
SLFWMTLTV	9	Unmodified	_SLFWMTLTV_					0	0	0		ENST00000486187.5_1_10:43090126-43133998:-|nuORF	ENST00000486187.5_1_10:43090126-43133998:-|nuORF	ENST00000486187.5_1_10:43090126-43133998:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2977294921875	2	549.288628	1096.5627	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.181	1	70.159	69.659	70.659	-0.022087								0	0	0	0.15265	1	17760	17760		34.102	5.6079	1				43233	11103	24987	24988	52708	52708					0.01828455373720317
SLFYAVVIAF	10	Unmodified	_SLFYAVVIAF_					0	0	0			REV__ENSG00000173578|ENST00000309285|XCR1	REV__ENSG00000173578|ENST00000309285|XCR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.318603515625	2	565.318243	1128.62193	0.52526	0.00029694	0.34357	0.00019423	0.86883	0.00049117	565.3184312052521	67.843	0.50876	67.921	67.603	68.112	0.078041					33	17	2	0	0	0	0.12727	1	17052	17052		42.095	7.6928	1	935000	+		43234	17792	24988	24989	52709	52709					0.06276674659557102
SLFYAVVIAF	10	Unmodified	_SLFYAVVIAF_					0	0	0			REV__ENSG00000173578|ENST00000309285|XCR1	REV__ENSG00000173578|ENST00000309285|XCR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.287841796875	2	565.318243	1128.62193	0.52526	0.00029694	0.34357	0.00019423	0.86883	0.00049117	565.3184312052521	67.843	0.50876	67.921	67.603	68.112	0.078041					33	17	2	0	0	0	0.27042	1	17101	17101		28.487	8.0332	1	935000	+		43235	17792	24988	24989	52710	52710					0.06276674659557102
SLFYEWCYD	9	Unmodified	_SLFYEWCYD_					0	0	0			REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5785217285156	3	409.167197	1224.47976	-0.27469	-0.0001124	-1.0911	-0.00044646	-1.3658	-0.00055886	409.16672578501885	27.77	0.30775	27.749	27.587	27.895	-0.021412					15	10	2	0	0	0	0.26238	1	4712	4712		1.0715	0	1	57065	+		43236	17864	24989	24990	52711	52711					-0.1234990614493654
SLFYEWCYD	9	Unmodified	_SLFYEWCYD_					0	0	0			REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	409.167197	1224.47976	-0.35623	-0.00014576	-1.5669	-0.0006411	-1.9231	-0.00078686	409.50080448956885	27.752	0.2234	27.752	27.673	27.896	0	0.011788	2.9221E-05	NaN	1.0715	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46669	+		43237	17864	24989	24990							-0.1234990614493654
SLFYEWCYD	9	Unmodified	_SLFYEWCYD_					0	0	0			REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	REV__nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	409.167197	1224.47976	-0.34329	-0.00014046	-1.7168	-0.00070245	-2.0601	-0.00084291	409.1665162616789	27.731	0.33888	27.719	27.584	27.923	-0.01156	-0.020711	-0.00015481	NaN	1.0715	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63430	+		43238	17864	24989	24990							-0.1234990614493654
SLFYFEVRMIR	11	Unmodified	_SLFYFEVRMIR_					0	0	0			REV__nc|ENSG00000106327|Q9UP52-2|TFR2	REV__nc|ENSG00000106327|Q9UP52-2|TFR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.78509521484375	3	487.595474	1459.76459	0.32249	0.00015725	1.7854	0.00087055	2.1079	0.0010278	487.5963671169957	20.422	0.28458	20.422	20.31	20.594	0					16	9	2	0	0	0	0.33296	1	2501	2501		2.6312	2.1253	1	53062	+		43239	14514	24990	24991	52712	52712					0.053099390592706186
SLGALPRWLF	10	Unmodified	_SLGALPRWLF_					0	0	0			REV__ENST00000367922.7_1_1:162625095-162688857:+|nuORF	REV__ENST00000367922.7_1_1:162625095-162688857:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.8008422851562	2	580.334759	1158.65496	0.081696	4.7411E-05	0.10086	5.8533E-05	0.18256	0.00010594	580.3347165006875	65.087	1.5909	65.176	64.958	66.549	0.088882					76	58	2	0	0	0	0.31889	1	16246	16246		6.2058	1.8765	1	182370	+		43240	20324	24991	24992	52713	52713					0.08198301502261529
SLGAPVSSAL	10	Unmodified	_SLGAPVSSAL_					0	0	0			REV__ENST00000397887.7_1_21:46270473-46270683:-|nuORF	REV__ENST00000397887.7_1_21:46270473-46270683:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7188415527344	2	451.2531	900.491647	0.11071	4.9957E-05	0.37412	0.00016882	0.48483	0.00021878	451.2531575748148	59.214	0.51237	59.214	58.996	59.508	0					36	17	3	0	0	0	0.28434	1	14346	14346		25.399	7.253	1	371280	+		43241	20678	24992	24993	52714	52714					0.03742078660570769
SLGARFYR	8	Unmodified	_SLGARFYR_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57630374-57630868:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.25750732421875	2	485.266876	968.519199	0.077031	3.7381E-05	0.22383	0.00010862	0.30087	0.000146	485.26700005076674	31.565	0.61687	31.565	31.309	31.925	0					42	21	3	0	0	0	0.04227	3	5893	5893;5952;6006		81.89	45.846	1	1160900			43242	7545	24993	24994	52715;52716;52717	52715					0.0336802671146188
SLGARFYR	8	Unmodified	_SLGARFYR_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57630374-57630868:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.2571716308594	2	485.266876	968.519199	0.12451	6.042E-05	0.28112	0.00013642	0.40563	0.00019684	485.26695703030464	31.546	0.5414	31.589	31.399	31.941	0.042364					29	18	2	0	0	0	0.20083	1	5934	5934		61.357	14.437	1	1412200			43243	7545	24993	24994	52718	52718					0.0336802671146188
SLGARFYR	8	Unmodified	_SLGARFYR_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57630374-57630868:-|nuORF	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2575378417969	2	485.266876	968.519199	0.2697	0.00013087	0.060985	2.9594E-05	0.33068	0.00016047	485.2668563366195	31.508	0.68429	31.549	31.206	31.89	0.040991					46	24	3	0	0	0	0.050146	2	5878	5878;5929		78.149	42.105	1	1248000			43244	7545	24993	24994	52719;52720	52719					0.0336802671146188
SLGAVVLSPA	10	Unmodified	_SLGAVVLSPA_					0	0	0			REV__ENST00000497918.5_1_2:220033318-220033813:-|nuORF	REV__ENST00000497918.5_1_2:220033318-220033813:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7933654785156	2	457.271293	912.528032	0.12252	5.6023E-05	0.42978	0.00019653	0.5523	0.00025255	457.27138774486605	32.767	1.0158	32.822	32.441	33.457	0.054375					56	36	3	0	0	0	0.31039	1	6250	6250		13.042	0.80181	1	249030	+		43245	19045	24994	24995	52721	52721					0.06826955557289693
SLGCIRKRWLR	11	Unmodified	_SLGCIRKRWLR_					0	0	0		nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF	nc|ENSG00000077235|Q12789-3|GTF3C1	nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.74017333984375	3	463.274957	1386.80304	0.11793	5.4633E-05	-3.8208	-0.0017701	-3.7028	-0.0017154	463.27328999188796	37.927	0.24405	37.927	37.82	38.064	0					15	8	2	0	0	0	0.33263	1	7858	7858		2.084	0.49169	1	86680			43246	1082	24995	24996	52722	52722					0.1251128948447331
SLGEVPSTK	9	Unmodified	_SLGEVPSTK_					0	0	0			REV__nc|ENSG00000058668|P23634-5|ATP2B4	REV__nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2501525878906	2	459.250557	916.486562	-0.063606	-2.9211E-05	-0.11451	-5.2588E-05	-0.17811	-8.1799E-05	459.2504438407773	23.257	0.49233	23.169	22.967	23.459	-0.087608					34	17	2	0	0	0	0.20167	1	3397	3397		22.736	0	1	318150	+		43247	13609	24996	24997	52723	52723					0.02497774797961938
SLGFSSFIMNL	11	Unmodified	_SLGFSSFIMNL_					0	0	0		ENST00000553525.5_1_14:72399541-72399604:+|nuORF	ENST00000553525.5_1_14:72399541-72399604:+|nuORF	ENST00000553525.5_1_14:72399541-72399604:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5750732421875	3	405.874125	1214.60055	-0.1666	-6.7617E-05	0.030121	1.2225E-05	-0.13648	-5.5392E-05	406.20815751432207	28.699	0.46433	28.695	28.519	28.984	-0.0042572					23	15	2	0	0	0	0.33025	1	5124	5124		3.8459	0.25885	1	59157			43248	11820	24997	24998	52724	52724					0.0018292156855750363
SLGGGGGG	8	Unmodified	_SLGGGGGG_					0	0	0		ENST00000575991.1_1_17:5185584-5185713:+|nuORF;nc|ENSG00000179168|Q86UU5-2|GGN;ENSG00000179168|ENST00000334928|GGN	REV__ENST00000481047.1_1_11:46403357-46403447:+|nuORF	REV__ENST00000481047.1_1_11:46403357-46403447:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8399047851562	1	561.262716	560.255439	0.49545	0.00027808	1.4187	0.00079629	1.9142	0.0010744	561.2646667363454	44.781	0.29571	44.849	44.599	44.894	0.068573					12	10	2	0	0	0	0.34337	1	9886	9886		2.3027	0	1	69900			43249	7109	24998	24999	52725	52725					-0.042278083932387744
SLGGKIPLFL	10	Unmodified	_SLGGKIPLFL_					0	0	0			REV__ENST00000357037.5_1_17:40554488-40554908:-|nuORF	REV__ENST00000357037.5_1_17:40554488-40554908:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8136596679688	2	522.826235	1043.63792	0.28572	0.00014938	-1.1995	-0.00062712	-0.91376	-0.00047774	522.8256546872756	61.278	0.48534	61.278	61.052	61.537	0					31	18	2	0	0	0	0.33268	1	14997	14997		15.847	0	1	659390	+		43250	20207	24999	25000	52726	52726					0.11784380896460789
SLGGKIPLFL	10	Unmodified	_SLGGKIPLFL_					0	0	0			REV__ENST00000357037.5_1_17:40554488-40554908:-|nuORF	REV__ENST00000357037.5_1_17:40554488-40554908:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	522.826235	1043.63792	0.28572	0.00014938	-1.1995	-0.00062712	-0.91376	-0.00047774	522.8256546872756	61.278	0.48534	61.278	61.052	61.537	0	-0.0026009	-0.00012695	NaN	15.847	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	659390	+		43251	20207	24999	25000							0.11784380896460789
SLGGKIPLFL	10	Unmodified	_SLGGKIPLFL_					0	0	0			REV__ENST00000357037.5_1_17:40554488-40554908:-|nuORF	REV__ENST00000357037.5_1_17:40554488-40554908:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	522.826235	1043.63792	0.20856	0.00010904	-0.76335	-0.0003991	-0.55479	-0.00029006	522.8257493711359	61.204	0.42122	61.301	61.116	61.538	0.096989	0.020987	0.00032908	NaN	15.847	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	844160	+		43252	20207	24999	25000							0.11784380896460789
SLGGKIPLFL	10	Unmodified	_SLGGKIPLFL_					0	0	0			REV__ENST00000357037.5_1_17:40554488-40554908:-|nuORF	REV__ENST00000357037.5_1_17:40554488-40554908:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.826235	1043.63792	0.26405	0.00013805	-1.2917	-0.00067533	-1.0277	-0.00053728	522.8253436309097	61.271	0.48182	61.262	61.046	61.528	-0.0094566	-0.018386	-0.00022338	NaN	15.847	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	610190	+		43253	20207	24999	25000							0.11784380896460789
SLGHLHPR	8	Unmodified	_SLGHLHPR_					0	0	0			REV__ENST00000550948.1_1_12:109016628-109016838:-|nuORF	REV__ENST00000550948.1_1_12:109016628-109016838:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.26983642578125	2	458.759218	915.503883	0.13523	6.204E-05	-0.91237	-0.00041856	-0.77714	-0.00035652	458.7587166846795	20.489	0.80597	20.489	20.136	20.942	0					41	28	2	0	0	0	0.34131	1	2544	2544		12.532	0.89125	1	90986	+		43254	22204	25000	25001	52727	52727					0.04275159914266169
SLGHSILL	8	Unmodified	_SLGHSILL_					0	0	0			REV__ENST00000598502.5_1_19:49671539-49686431:+|nuORF	REV__ENST00000598502.5_1_19:49671539-49686431:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.2527160644531	2	420.252903	838.491253	-0.055935	-2.3507E-05	-0.093874	-3.9451E-05	-0.14981	-6.2958E-05	420.2527334527629	57.876	1.1343	57.876	57.578	58.712	0					86	39	3	0	0	0	0.23581	1	14006	14006		38.151	0	1	2382400	+		43255	15462	25001	25002	52728	52728					0.06554703731376321
SLGHSILL	8	Unmodified	_SLGHSILL_					0	0	0			REV__ENST00000598502.5_1_19:49671539-49686431:+|nuORF	REV__ENST00000598502.5_1_19:49671539-49686431:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.2237854003906	2	420.252903	838.491253	-0.055935	-2.3507E-05	-0.093874	-3.9451E-05	-0.14981	-6.2958E-05	420.2527334527629	57.876	1.1343	57.876	57.578	58.712	0					86	39	3	0	0	0	0.27422	1	14103	14103		40.449	0	1	2382400	+		43256	15462	25001	25002	52729	52729					0.06554703731376321
SLGHSILL	8	Unmodified	_SLGHSILL_					0	0	0			REV__ENST00000598502.5_1_19:49671539-49686431:+|nuORF	REV__ENST00000598502.5_1_19:49671539-49686431:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.2527770996094	2	420.252903	838.491253	0.093112	3.913E-05	-0.27723	-0.00011651	-0.18412	-7.7377E-05	420.25265134020407	57.715	0.94972	57.8	57.518	58.468	0.085617					88	34	4	0	0	0	0.17761	1	13962	13962		46.921	0	1	2251500	+		43257	15462	25001	25002	52730	52730					0.06554703731376321
SLGHSILL	8	Unmodified	_SLGHSILL_					0	0	0			REV__ENST00000598502.5_1_19:49671539-49686431:+|nuORF	REV__ENST00000598502.5_1_19:49671539-49686431:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2528381347656	2	420.252903	838.491253	0.12106	5.0875E-05	-0.18773	-7.8896E-05	-0.066676	-2.8021E-05	420.25270208680973	57.889	0.99854	57.871	57.606	58.605	-0.0172					82	36	3	0	0	0	0.17761	1	14004	14004		46.921	0	1	2411100	+		43258	15462	25001	25002	52731	52731					0.06554703731376321
SLGKMKKLG	9	Unmodified	_SLGKMKKLG_					0	0	0			REV__nc|ENSG00000127328|Q96QF0-6|RAB3IP	REV__nc|ENSG00000127328|Q96QF0-6|RAB3IP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.28204345703125	2	481.296788	960.579022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.58	1	38.58	38.08	39.08	0								0	0	0	0.24522	1	8057	8057		7.9102	1.5561	1		+		43259	22983	25002	25003	52732	52732					0.09715581330488021
SLGLALFF	8	Unmodified	_SLGLALFF_					0	0	0			REV__ENSG00000174669|ENST00000357440|SLC29A2	REV__ENSG00000174669|ENST00000357440|SLC29A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.2383728027344	2	434.252372	866.49019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.432	1	86.516	86.016	87.016	0.084251								0	0	0	0.37664	1	22740	22740		2.5775	0	1		+		43260	17848	25003	25004	52733	52733					0.051604893624812576
SLGLGPYVSI	10	Unmodified	_SLGLGPYVSI_					0	0	0		ENSG00000283992|ENST00000317543|SLURP2;nc|ENSG00000180155|P0DP58-2|LYNX1	ENSG00000283992|ENST00000317543|SLURP2	ENSG00000283992|ENST00000317543|SLURP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.26605224609375	2	503.2844	1004.55425	0.33077	0.00016647	-1.44	-0.00072471	-1.1092	-0.00055824	503.28363958387104	68.193	0.38419	68.193	67.842	68.226	0					17	13	2	0	0	0	0.29092	1	17153	17153		21.537	1.0834	1	234020			43261	8764	25004	25005	52734	52734					0.0521522472874949
SLGLIPSIAMI	11	Unmodified	_SLGLIPSIAMI_					0	0	0			REV__ABCB4|p.F739Hfs*12|1|0.05|ENSG00000005471|chr7:87422222-87422223|-/TTCTTACAGTG|frameshift_variant	REV__ABCB4|p.F739Hfs*12|1|0.05|ENSG00000005471|chr7:87422222-87422223|-/TTCTTACAGTG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.8311157226562	2	557.83066	1113.64677	0.36625	0.00020431	0.9513	0.00053066	1.3175	0.00073497	557.8309405000713	90.678	0.5302	90.768	90.516	91.046	0.090668					84	40	3	0	0	0	0.46059	1	24008	24008		3.2813	0.28607	1	451390	+		43262	13064	25005	25006	52735	52735					0.09448986470647469
SLGLNTEPLP	10	Unmodified	_SLGLNTEPLP_					0	0	0			REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7844848632812	2	520.784764	1039.55498	0.23032	0.00011995	-0.21699	-0.000113	0.013333	6.9434E-06	520.7843363132139	96.717	1.8661	96.788	95.915	97.781	0.070465					529	186	4	0	0	0	0.34795	3	25935	25815;25894;25935		13.042	5.7532	1	1911100	+		43263	14336	25006	25007	52736;52737;52738	52738					0.036780193777985914
SLGLNTEPLP	10	Unmodified	_SLGLNTEPLP_					0	0	0			REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7844848632812	2	520.784764	1039.55498	0.40008	0.00020836	-0.29478	-0.00015352	0.1053	5.4838E-05	520.7842441346467	96.781	2.0616	96.775	96.072	98.134	-0.0055466					546	213	4	0	0	0	0.34795	4	25911	25911;25948;25987;26027		13.042	5.7532	1	1691900	+		43264	14336	25006	25007	52739;52740;52741;52742	52739					0.036780193777985914
SLGLNTEPLP	10	Unmodified	_SLGLNTEPLP_					0	0	0			REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	520.784764	1039.55498	0.14521	7.5621E-05	-0.45277	-0.0002358	-0.30757	-0.00016018	520.7843740960483	96.791	1.39	96.791	96.343	97.733	0	0.0063037	-3.9577E-05	NaN	13.042	320	135	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	843020	+		43265	14336	25006	25007							0.036780193777985914
SLGLNTEPLP	10	Unmodified	_SLGLNTEPLP_					0	0	0			REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	520.784764	1039.55498	0.23032	0.00011995	-0.21699	-0.000113	0.013333	6.9434E-06	520.7843363132139	96.717	1.8661	96.788	95.915	97.781	0.070465	0.0030938	0.00020601	NaN	13.042	529	186	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1911100	+		43266	14336	25006	25007							0.036780193777985914
SLGLQRLEL	9	Unmodified	_SLGLQRLEL_					0	0	0		nc|ENSG00000168502|Q9Y4B5-4|MTCL1	nc|ENSG00000168502|Q9Y4B5-4|MTCL1	nc|ENSG00000168502|Q9Y4B5-4|MTCL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2848510742188	2	514.808574	1027.60259	0.59906	0.0003084	-0.8736	-0.00044974	-0.27455	-0.00014134	515.3095177830464	56.325	0.77446	56.325	56.101	56.876	0					47	28	3	0	0	0	0.21538	1	13528	13528		20.415	3.3016	1	522110			43267	12831	25007	25008	52743	52743					0.08989718368638933
SLGLQRLEL	9	Unmodified	_SLGLQRLEL_					0	0	0		nc|ENSG00000168502|Q9Y4B5-4|MTCL1	nc|ENSG00000168502|Q9Y4B5-4|MTCL1	nc|ENSG00000168502|Q9Y4B5-4|MTCL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2847900390625	2	514.808574	1027.60259	0.64766	0.00033342	-0.81605	-0.00042011	-0.16839	-8.669E-05	515.3097291458254	56.388	0.66223	56.466	56.221	56.883	0.078674					28	24	2	0	0	0	0.21538	1	13505	13505		10.8	2.644	1	243340			43268	12831	25007	25008	52744	52744					0.08989718368638933
SLGLRRPT	8	Unmodified	_SLGLRRPT_					0	0	0		ENST00000534481.1_1_11:46722838-46724291:+|nuORF	ENST00000534481.1_1_11:46722838-46724291:+|nuORF	ENST00000534481.1_1_11:46722838-46724291:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2742919921875	2	450.274701	898.534849	0.36379	0.0001638	-0.26926	-0.00012124	0.094529	4.2564E-05	450.27447917864663	82.884	1.3226	82.864	82.396	83.719	-0.020584					161	53	5	0	0	0	0.44389	1	21568	21568		7.9102	0	1	12647000			43269	11659	25008	25009	52745	52745					0.08152313228504227
SLGLWLALVDG	11	Unmodified	_SLGLWLALVDG_					0	0	0		nc|ENSG00000204070|Q8N2H4-2|SYS1;ENST00000461890.1_1_20:43991814-43994327:+|nuORF;ENSG00000204070|ENST00000243918|SYS1	nc|ENSG00000204070|Q8N2H4-2|SYS1	nc|ENSG00000204070|Q8N2H4-2|SYS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3246459960938	2	572.324057	1142.63356	0.3643	0.0002085	-0.43858	-0.00025101	-0.074285	-4.2515E-05	572.3237960235866	51.433	1.8394	51.433	50.569	52.408	0					124	67	2	0	0	0	0.41896	1	11972	11972		8.7454	0	1	464490			43270	8197	25009	25010	52746	52746					0.06794871682882331
SLGLWLALVDG	11	Unmodified	_SLGLWLALVDG_					0	0	0		nc|ENSG00000204070|Q8N2H4-2|SYS1;ENST00000461890.1_1_20:43991814-43994327:+|nuORF;ENSG00000204070|ENST00000243918|SYS1	nc|ENSG00000204070|Q8N2H4-2|SYS1	nc|ENSG00000204070|Q8N2H4-2|SYS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	572.324057	1142.63356	0.3643	0.0002085	-0.43858	-0.00025101	-0.074285	-4.2515E-05	572.3237960235866	51.433	1.8394	51.433	50.569	52.408	0	-0.098054	-0.00016319	NaN	8.7454	124	67	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	464490			43271	8197	25009	25010							0.06794871682882331
SLGLWLALVDG	11	Unmodified	_SLGLWLALVDG_					0	0	0		nc|ENSG00000204070|Q8N2H4-2|SYS1;ENST00000461890.1_1_20:43991814-43994327:+|nuORF;ENSG00000204070|ENST00000243918|SYS1	nc|ENSG00000204070|Q8N2H4-2|SYS1	nc|ENSG00000204070|Q8N2H4-2|SYS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	572.324057	1142.63356	0.4368	0.00024999	-0.35936	-0.00020567	0.077443	4.4323E-05	572.3238683640561	51.464	1.7032	51.511	50.656	52.359	0.046574	-0.020201	-7.2512E-05	NaN	8.7454	94	62	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	430450			43272	8197	25009	25010							0.06794871682882331
SLGLWLALVDG	11	Unmodified	_SLGLWLALVDG_					0	0	0		nc|ENSG00000204070|Q8N2H4-2|SYS1;ENST00000461890.1_1_20:43991814-43994327:+|nuORF;ENSG00000204070|ENST00000243918|SYS1	nc|ENSG00000204070|Q8N2H4-2|SYS1	nc|ENSG00000204070|Q8N2H4-2|SYS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	572.324057	1142.63356	0.21955	0.00012566	-0.16941	-9.6959E-05	0.05014	2.8696E-05	572.3240612079138	51.64	1.8034	51.65	50.647	52.451	0.0095673	0.11826	0.00014491	NaN	8.7454	100	67	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392780			43273	8197	25009	25010							0.06794871682882331
SLGLYFLL	8	Unmodified	_SLGLYFLL_					0	0	0		ENST00000522591.1_2_8:143784477-143784786:+|nuORF	ENST00000522591.1_2_8:143784477-143784786:+|nuORF	ENST00000522591.1_2_8:143784477-143784786:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2569885253906	2	463.273304	924.532055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.789	1	75.842	75.342	76.342	0.053413								0	0	0	0.33625	1	19480	19480		20.871	0	1				43274	11500	25010	25011	52747	52747					0.06677045050992092
SLGNGPSSV	9	Unmodified	_SLGNGPSSV_					0	0	0			REV__ENST00000455230.5_1_2:37458781-37459291:+|nuORF	REV__ENST00000455230.5_1_2:37458781-37459291:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.2167663574219	2	409.20615	816.397747	-0.059129	-2.4196E-05	3.2411	0.0013263	3.182	0.0013021	409.2085241255827	27.326	0.51472	27.315	26.984	27.499	-0.01156					25	17	3	0	0	0	0.29176	1	4624	4624		10.074	1.4806	1	40304	+		43275	21156	25011	25012	52748	52748					-0.017796404417140366
SLGPGSATVK	10	Unmodified	_SLGPGSATVK_					0	0	0			REV__FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant	REV__FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.250244140625	2	458.758549	915.502546	0.12544	5.7547E-05	-0.27626	-0.00012674	-0.15082	-6.9192E-05	458.7583996196191	23.156	0.80669	23.111	22.898	23.705	-0.044867					59	28	3	0	0	0	0.23397	1	3388	3388		28.495	0	1	157340	+		43276	15788	25012	25013	52749	52749					0.04141481034844219
SLGPPLCHVL	10	Unmodified	_SLGPPLCHVL_					0	0	0		ENST00000489018.1_1_1:109812780-109813362:+|nuORF	ENST00000489018.1_1_1:109812780-109813362:+|nuORF	ENST00000489018.1_1_1:109812780-109813362:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2952270507812	2	518.28642	1034.55829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.84	1	49.885	49.385	50.385	0.044891								0	0	0	0.34994	1	11512	11512		14.838	1.3304	1				43277	11142	25013	25014	52750	52750					0.0423899095080742
SLGPRVTRLTR	11	Unmodified	_SLGPRVTRLTR_					0	0	0			REV__ENSG00000186648|ENST00000342740|CARMIL3	REV__ENSG00000186648|ENST00000342740|CARMIL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.3828735351562	2	628.383303	1254.75205	0.49805	0.00031297	-0.88297	-0.00055484	-0.38492	-0.00024188	628.3826788624123	82.62	0.37444	82.62	82.358	82.733	0					25	13	2	0	0	0	0.33324	1	21552	21552		1.1933	0	1	391820	+		43278	18458	25014	25015	52751	52751					0.13486663711250912
SLGTGYFRS	9	Unmodified	_SLGTGYFRS_					0	0	0		nc|ENSG00000158321|Q8WXX7-3|AUTS2	nc|ENSG00000158321|Q8WXX7-3|AUTS2	nc|ENSG00000158321|Q8WXX7-3|AUTS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.24749755859375	2	494.248349	986.482145	-0.52665	-0.0002603	0.48222	0.00023833	-0.044436	-2.1963E-05	494.24844074289604	34.474	1.1347	34.474	34.22	35.354	0					78	40	3	0	0	0	0.079752	1	6887	6887		41.84	7.4379	1	799050			43279	12781	25015	25016	52752	52752					-0.011636896249569872
SLGTVDIKCL	10	Unmodified	_SLGTVDIKCL_					0	0	0		ENST00000273062.6_1_2:219269262-219269553:+|nuORF	ENST00000273062.6_1_2:219269262-219269553:+|nuORF	ENST00000273062.6_1_2:219269262-219269553:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7891845703125	2	524.788992	1047.56343	0.6749	0.00035418	-0.23997	-0.00012593	0.43493	0.00022825	524.788862639565	40.399	0.66238	40.399	40.078	40.74	0					40	23	2	0	0	0	0.3001	1	8601	8601		20.415	2.2682	1	682720			43280	9090	25016	25017	52753	52753					0.04155250022790824
SLGTVDIKCL	10	Unmodified	_SLGTVDIKCL_					0	0	0		ENST00000273062.6_1_2:219269262-219269553:+|nuORF	ENST00000273062.6_1_2:219269262-219269553:+|nuORF	ENST00000273062.6_1_2:219269262-219269553:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7889404296875	2	524.788992	1047.56343	0.68648	0.00036026	-0.38585	-0.00020249	0.30063	0.00015777	524.7887125599225	40.303	0.65587	40.396	40.09	40.745	0.09267					47	23	3	0	0	0	0.3001	1	8576	8576		20.415	0	1	643610			43281	9090	25016	25017	52754	52754					0.04155250022790824
SLGTVLQQAL	10	Unmodified	_SLGTVLQQAL_					0	0	0		ENSG00000172938|ENST00000309106|MRGPRD	ENSG00000172938|ENST00000309106|MRGPRD	ENSG00000172938|ENST00000309106|MRGPRD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2882080078125	2	515.300581	1028.58661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.132	1	37.132	36.632	37.632	0								0	0	0	0.34755	1	7615	7615		15.847	0	1				43282	6676	25017	25018	52755	52755					0.07346012131756652
SLGTYTRLS	9	Unmodified	_SLGTYTRLS_					0	0	0			REV__ENSG00000159461|ENST00000290649|AMFR	REV__ENSG00000159461|ENST00000290649|AMFR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2877502441406	2	499.269281	996.52401	0.67759	0.0003383	0.013057	6.5192E-06	0.69065	0.00034482	499.2694803595161	36.838	0.4812	36.931	36.633	37.114	0.093018					34	15	3	0	0	0	0.23749	1	7569	7569		20.415	2.0414	1	313450	+		43283	16856	25018	25019	52756	52756					0.025608660635725755
SLGVEPIRQ	9	Unmodified	_SLGVEPIRQ_					0	0	0			REV__ENSG00000120662|ENST00000379480|MTRF1	REV__ENSG00000120662|ENST00000379480|MTRF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7976989746094	2	499.785099	997.555644	0.37364	0.00018674	0.085798	4.288E-05	0.45943	0.00022962	499.7852047588091	49.882	1.025	49.882	49.408	50.433	0					102	37	4	0	0	0	0.14076	1	11612	11612		32.305	3.2239	1	4210400	+		43284	15090	25019	25020	52757	52757					0.05676858817514585
SLGVFLLKS	9	Unmodified	_SLGVFLLKS_					0	0	0		ENSG00000181915|ENST00000373783|ADO	ENSG00000181915|ENST00000373783|ADO	ENSG00000181915|ENST00000373783|ADO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.25189208984375	2	482.29731	962.580068	0.27038	0.00013041	-0.20546	-9.9094E-05	0.064923	3.1312E-05	482.2971913032942	57.864	0.84148	57.949	57.571	58.412	0.085617					39	30	2	0	0	0	0.016005	1	14000	14000		75.761	2.7929	1	389250			43285	7260	25020	25021	52758	52758					0.09728118971042932
SLGVFLLKS	9	Unmodified	_SLGVFLLKS_					0	0	0		ENSG00000181915|ENST00000373783|ADO	ENSG00000181915|ENST00000373783|ADO	ENSG00000181915|ENST00000373783|ADO	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	482.29731	962.580068	0.20171	9.7283E-05	0.12574	6.0643E-05	0.32745	0.00015793	482.2973229808852	58.043	0.53018	58.043	57.798	58.328	0	0.060176	0.00023008	NaN	75.761	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259230			43286	7260	25020	25021							0.09728118971042932
SLGVFLLKS	9	Unmodified	_SLGVFLLKS_					0	0	0		ENSG00000181915|ENST00000373783|ADO	ENSG00000181915|ENST00000373783|ADO	ENSG00000181915|ENST00000373783|ADO	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	482.29731	962.580068	0.42814	0.00020649	-0.19974	-9.6333E-05	0.2284	0.00011016	482.2971024426337	57.973	0.64594	57.956	57.767	58.413	-0.0172	-0.026775	-8.3878E-05	NaN	75.761	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265930			43287	7260	25020	25021							0.09728118971042932
SLGVFVGF	8	Unmodified	_SLGVFVGF_					0	0	0			REV__ENSG00000149506|ENST00000278853|ZP1	REV__ENSG00000149506|ENST00000278853|ZP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2279968261719	2	413.228897	824.44324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.85	1	21.85	21.35	22.35	0								0	0	0	0.34752	1	2966	2966		15.768	6.4208	1		+		43288	16471	25021	25022	52759	52759					0.023996298113388548
SLGVVFRL	8	Unmodified	_SLGVVFRL_					0	0	0		nc|ENSG00000089060|Q6J4K2-2|SLC8B1;ENSG00000089060|ENST00000680972|SLC8B1	nc|ENSG00000089060|Q6J4K2-2|SLC8B1	nc|ENSG00000089060|Q6J4K2-2|SLC8B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.77642822265625	2	445.776545	889.538538	0.38728	0.00017264	-0.25445	-0.00011343	0.13283	5.9213E-05	445.7763158803163	53.803	0.95073	53.793	53.507	54.458	-0.0096054					69	34	3	0	0	0	0.065797	1	12719	12719		70.716	13.244	1	1487100			43289	1345	25022	25023	52760	52760					0.089349830023707
SLGWKTVK	8	Unmodified	_SLGWKTVK_					0	0	0		ENST00000544675.1_1_12:4777624-4791467:+|nuORF;ENST00000543979.1_1_12:4777624-4835764:+|nuORF;ENSG00000139180|ENST00000266544|NDUFA9	ENST00000544675.1_1_12:4777624-4791467:+|nuORF	ENST00000544675.1_1_12:4777624-4791467:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7716064453125	2	459.774003	917.533452	-0.14574	-6.7008E-05	3.3014	0.0015179	3.1557	0.0014509	459.776274328062	14.713	1.8813	14.647	14.32	16.202	-0.066068					146	65	5	0	0	0	0.43043	1	751	751		12.532	0.89125	1	11742000			43290	4214	25023	25024	52761	52761					0.07138679139745818
SLGWMMTHL	9	2 Oxidation (M)	_SLGWM(Oxidation (M))M(Oxidation (M))THL_		SLGWM(1)M(1)THL		SLGWM(48)M(48)THL	0	0	2		ENST00000373116.5_1_1:36926896-36929794:-|nuORF	ENST00000373116.5_1_1:36926896-36929794:-|nuORF	ENST00000373116.5_1_1:36926896-36929794:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.2517700195312	2	554.25172	1106.48889	0.29872	0.00016557	0.024365	1.3505E-05	0.32309	0.00017907	554.251738603924	51.902	0.92997	51.902	51.508	52.438	0					97	33	5	0	0	0	0.062246	1	12146	12146		48.346	8.3885	1	3830700			43291	9860	25024	25025	52762	52762		934;935			-0.06009836060229645
SLHFLPKLEVL	11	Unmodified	_SLHFLPKLEVL_					0	0	0		nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.5958557128906	3	432.595579	1294.76491	-0.020882	-9.0334E-06	0.31049	0.00013432	0.28961	0.00012529	432.59545405057963	41.052	1.3144	41.142	40.252	41.566	0.090248					131	48	4	0	0	0	0.43513	1	8852	8852		6.6235	0.75532	1	1587900			43292	8517	25025	25026	52763	52763					0.12931682050793825
SLHFLPKLEVL	11	Unmodified	_SLHFLPKLEVL_					0	0	0		nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.59588623046875	3	432.595579	1294.76491	-0.19952	-8.6312E-05	0.47008	0.00020336	0.27056	0.00011704	432.59553382867813	41.073	1.1092	41.169	40.313	41.422	0.096622					122	40	4	0	0	0	0.45422	1	8825	8825		4.1166	0.27072	1	1653000			43293	8517	25025	25026	52764	52764					0.12931682050793825
SLHFLPKLEVL	11	Unmodified	_SLHFLPKLEVL_					0	0	0		nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	432.595579	1294.76491	-0.020882	-9.0334E-06	0.31049	0.00013432	0.28961	0.00012529	432.59545405057963	41.052	1.3144	41.142	40.252	41.566	0.090248	-0.12061	-2.7359E-05	NaN	6.6235	131	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1587900			43294	8517	25025	25026							0.12931682050793825
SLHGGSLLTI	10	Unmodified	_SLHGGSLLTI_					0	0	0		ENSG00000170927|ENST00000371117|PKHD1;nc|ENSG00000170927|P08F94-2|PKHD1;PKHD1|p.A1797Gfs*9|1|0.23|ENSG00000170927|chr6:52017624-52017625|-/G|frameshift_variant	ENSG00000170927|ENST00000371117|PKHD1	ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.28973388671875	2	499.287474	996.560395	0.63556	0.00031733	1.4422	0.00072005	2.0777	0.0010374	499.28799989855787	47.943	0.8614	47.943	47.745	48.606	0					65	30	3	0	0	0	0.18562	1	10869	10869		34.402	1.616	1	4466900			43295	6498	25026	25027	52765	52765					0.061977429602734446
SLHLLVLFS	9	Unmodified	_SLHLLVLFS_					0	0	0		MLT1K_dup15840|chr19:35157523-35158030:-|1.2991877397698728|0.3327659589692898|1.97|539.0|17|1|anti-sense	MLT1K_dup15840|chr19:35157523-35158030:-|1.2991877397698728|0.3327659589692898|1.97|539.0|17|1|anti-sense	MLT1K_dup15840|chr19:35157523-35158030:-|1.2991877397698728|0.3327659589692898|1.97|539.0|17|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2393188476562	2	514.810585	1027.60662	0.48881	0.00025165	-2.2375	-0.0011519	-1.7487	-0.00090024	515.3093083067844	55.192	0.99261	55.263	54.997	55.989	0.070885					73	36	3	0	0	0	0.19839	1	13184	13184		28.487	10.352	1	530320			43296	12543	25027	25028	52766	52766					0.09391807862357382
SLHPSWLLL	9	Unmodified	_SLHPSWLLL_					0	0	0		ENST00000398073.6_1_12:58216199-58216532:-|nuORF	ENST00000398073.6_1_12:58216199-58216532:-|nuORF	ENST00000398073.6_1_12:58216199-58216532:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3085327148438	2	533.30821	1064.60187	0.40117	0.00021395	0.29077	0.00015507	0.69194	0.00036902	533.3081723282213	65.4	1.4096	65.389	64.972	66.382	-0.011337					137	51	4	0	0	0	0.17787	1	16360	16360		26.884	1.4843	1	7499500			43297	10153	25028	25029	52767	52767					0.07214923719629951
SLHSHHPF	8	Unmodified	_SLHSHHPF_					0	0	0			REV__ENST00000402010.6_1_11:63677722-63677908:+|nuORF	REV__ENST00000402010.6_1_11:63677722-63677908:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2818298339844	2	481.235576	960.456599	0.35277	0.00016976	-2.0297	-0.00097675	-1.6769	-0.00080698	481.23511173072706	36.735	0.55202	36.735	36.511	37.063	0					31	19	3	0	0	0	0.31375	1	7519	7519		26.341	8.1949	1	129120	+		43298	20713	25029	25030	52768	52768					-0.025211193567201917
SLHYDQTW	8	Unmodified	_SLHYDQTW_					0	0	0			REV__ENST00000572017.1_1_16:10958826-10982354:-|nuORF	REV__ENST00000572017.1_1_16:10958826-10982354:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8006591796875	2	525.237981	1048.46141	0.44039	0.00023131	3.223	0.0016929	3.6634	0.0019242	525.7404158023106	49.723	0.13015	49.768	49.695	49.825	0.044891					5	4	2	0	0	0	0.34218	1	11476	11476		5.2307	0	1	73784	+		43299	22418	25030	25031	52769	52769					-0.060882800046329066
SLHYLEQVII	10	Unmodified	_SLHYLEQVII_					0	0	0		nc|ENSG00000164627|Q6ZMV9-3|KIF6;ENSG00000164627|ENST00000287152|KIF6	nc|ENSG00000164627|Q6ZMV9-3|KIF6	nc|ENSG00000164627|Q6ZMV9-3|KIF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.2434387207031	3	405.564168	1213.67067	0.16676	6.7632E-05	0.72672	0.00029473	0.89348	0.00036236	405.5642475990996	54.634	0.4544	54.619	54.251	54.706	-0.015923					22	15	2	0	0	0	0.31651	1	12872	12872		11.518	4.4808	1	176190			43300	5858	25031	25032	52770	52770					0.07238543228686467
SLHYVGAGVAF	11	Unmodified	_SLHYVGAGVAF_					0	0	0		ENST00000431593.5_1_2:85826201-85828246:-|nuORF;nc|ENSG00000168890|Q86TG1-2|TMEM150A;ENST00000444380.5_1_2:85826201-85828277:-|nuORF;ENSG00000168890|ENST00000334462|TMEM150A	ENST00000431593.5_1_2:85826201-85828246:-|nuORF	ENST00000431593.5_1_2:85826201-85828246:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8069458007812	2	560.792924	1119.57129	0.35881	0.00020122	0.48054	0.00026948	0.83935	0.0004707	560.7930501484063	53.928	0.41911	53.985	53.766	54.185	0.056255					26	15	2	0	0	0	0.20634	1	12742	12742		30.637	5.2372	1	238430			43301	6306	25032	25033	52771	52771					0.01629145334572968
SLIAPCWVLTA	11	Unmodified	_SLIAPCWVLTA_					0	0	0		ENST00000510358.5_1_5:176830573-176831188:-|nuORF;ENST00000502854.5_1_5:176830573-176831380:-|nuORF;ENSG00000131187|ENST00000253496|F12	ENST00000510358.5_1_5:176830573-176831188:-|nuORF	ENST00000510358.5_1_5:176830573-176831188:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.32275390625	2	587.32046	1172.62637	0.12239	7.188E-05	2.922	0.0017161	3.0444	0.001788	587.3223576902681	59.671	0.7626	59.671	59.412	60.175	0					60	26	3	0	0	0	0.30767	2	14527	14527;14577		21.537	1.1224	1	2432300			43302	3549	25033	25034	52772;52773	52772					0.046958158108054704
SLIAVGHF	8	Unmodified	_SLIAVGHF_					0	0	0			REV__ENSG00000103540|ENST00000694978|CCP110	REV__ENSG00000103540|ENST00000694978|CCP110	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2279052734375	2	422.239796	842.465038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.69	1	50.706	50.206	51.206	0.015835								0	0	0	0.34752	1	11765	11765		15.768	0.92995	1		+		43303	14379	25034	25035	52774	52774					0.03750434559901805
SLICVRPAL	9	Unmodified	_SLICVRPAL_					0	0	0			REV__ENST00000538616.1_1_12:6559812-6560605:-|nuORF	REV__ENST00000538616.1_1_12:6559812-6560605:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2749328613281	2	486.288963	970.563372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.444	1	30.472	29.972	30.972	0.027946								0	0	0	0.21726	1	5573	5573		16.942	0	1		+		43304	22103	25035	25036	52775	52775					0.07691294813446348
SLIEFLKQK	9	Unmodified	_SLIEFLKQK_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1;ENST00000454337.1_1_16:1697048-1706838:+|nuORF	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3033447265625	2	553.334424	1104.6543	0.20275	0.00011219	-0.51457	-0.00028473	-0.31181	-0.00017254	553.334349215706	39.359	0.38417	39.452	39.251	39.635	0.09267					32	13	3	0	0	0	0.18936	1	8267	8267		32.786	1.5173	1	371990			43305	384	25036	25037	52776	52776					0.10615462062582992
SLIEFLKQK	9	Unmodified	_SLIEFLKQK_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1;ENST00000454337.1_1_16:1697048-1706838:+|nuORF	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3040161132812	2	553.334424	1104.6543	0.36027	0.00019935	-0.71724	-0.00039687	-0.35697	-0.00019753	553.3340863726453	39.353	0.46391	39.452	39.212	39.676	0.099403					29	16	3	0	0	0	0.20167	1	8268	8268		29.082	1.4528	1	308620			43306	384	25036	25037	52777	52777					0.10615462062582992
SLIEKSRRL	9	Unmodified	_SLIEKSRRL_					0	0	0		ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8270874023438	2	551.340572	1100.66659	0.2755	0.00015189	1.645	0.00090693	1.9205	0.0010588	551.3425417276864	22.983	0.48795	22.938	22.649	23.137	-0.044867					30	17	3	0	0	0	0.24848	1	3250	3250		13.906	3.0821	1	59086			43307	2664	25037	25038	52778	52778					0.1202849852561485
SLIEKSRRL	9	Unmodified	_SLIEKSRRL_					0	0	0		ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	551.340572	1100.66659	0.15397	8.4889E-05	3.3884	0.0018682	3.5424	0.0019531	551.3426595196737	22.793	0.46408	22.793	22.505	22.969	0	-0.072796	0.00056706	NaN	13.906	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65714			43308	2664	25037	25038							0.1202849852561485
SLIFFVIWHII	11	Unmodified	_SLIFFVIWHII_					0	0	0		ENSG00000174871|ENST00000311445|CNIH2	ENSG00000174871|ENST00000311445|CNIH2	ENSG00000174871|ENST00000311445|CNIH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7403259277344	3	463.27607	1386.80638	0.15085	6.9887E-05	-4.2352	-0.0019621	-4.0844	-0.0018922	463.2746457700287	37.822	0.16232	37.92	37.845	38.007	0.097527					7	5	2	0	0	0	0.33287	1	7806	7806		2.8433	0.4085	1	127830			43309	6824	25038	25039	52779	52779					0.12844862810129598
SLIFLMPFAYF	11	Unmodified	_SLIFLMPFAYF_					0	0	0		ENST00000547670.5_1_12:49494396-49503620:-|nuORF;nc|ENSG00000139636|Q6UX01-5|LMBR1L;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-2|LMBR1L;ENSG00000139636|ENST00000267102|LMBR1L	ENST00000547670.5_1_12:49494396-49503620:-|nuORF	ENST00000547670.5_1_12:49494396-49503620:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2815856933594	3	450.238516	1347.69372	0.31173	0.00014035	-0.50054	-0.00022536	-0.18881	-8.5009E-05	450.23832765007745	36.113	0.37521	36.113	35.907	36.282	0					23	13	2	0	0	0	0.33064	1	7272	7272		5.0475	0	1	117240			43310	4251	25039	25040	52780	52780					0.03377846021771802
SLIFLMPFAYF	11	Unmodified	_SLIFLMPFAYF_					0	0	0		ENST00000547670.5_1_12:49494396-49503620:-|nuORF;nc|ENSG00000139636|Q6UX01-5|LMBR1L;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-2|LMBR1L;ENSG00000139636|ENST00000267102|LMBR1L	ENST00000547670.5_1_12:49494396-49503620:-|nuORF	ENST00000547670.5_1_12:49494396-49503620:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.28155517578125	3	450.238516	1347.69372	0.40441	0.00018208	-0.18656	-8.3996E-05	0.21785	9.8084E-05	450.2387934955555	35.948	0.42999	36.034	35.79	36.22	0.08625					23	15	2	0	0	0	0.33064	1	7227	7227		2.8433	0	1	156640			43311	4251	25039	25040	52781	52781					0.03377846021771802
SLIFLNPTL	9	Unmodified	_SLIFLNPTL_					0	0	0		ENSG00000189050|ENST00000305783|RNFT1	ENSG00000189050|ENST00000305783|RNFT1	ENSG00000189050|ENST00000305783|RNFT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.77655029296875	2	509.302593	1016.59063	0.39921	0.00020332	0.36859	0.00018772	0.7678	0.00039104	509.3029241488071	86.986	0.92151	86.98	86.414	87.335	-0.0056229					70	37	3	0	0	0	0.24289	1	22816	22816		18.146	3.3081	1	230710			43312	7796	25040	25041	52782	52782					0.08300101625468415
SLIGHSARV	9	Unmodified	_SLIGHSARV_					0	0	0		nc|ENSG00000119402|Q9UKT8-2|FBXW2;ENSG00000119402|ENST00000608872|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2721862792969	2	470.272158	938.529764	0.11128	5.2334E-05	0.19073	8.9696E-05	0.30202	0.00014203	470.27219163285827	82.091	1.4972	82.091	81.504	83.001	0					133	56	4	0	0	0	0.28674	1	21409	21409		10.824	0	1	3749300			43313	2875	25041	25042	52783	52783					0.058040093658974
SLIGHSARV	9	Unmodified	_SLIGHSARV_					0	0	0		nc|ENSG00000119402|Q9UKT8-2|FBXW2;ENSG00000119402|ENST00000608872|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2723693847656	2	470.272158	938.529764	0.00050463	2.3731E-07	0.29287	0.00013773	0.29338	0.00013797	470.2722357752448	81.938	1.4045	82.007	81.461	82.866	0.068993					143	59	4	0	0	0	0.28674	1	21429	21429		10.824	0	1	3675100			43314	2875	25041	25042	52784	52784					0.058040093658974
SLIGHSARV	9	Unmodified	_SLIGHSARV_					0	0	0		nc|ENSG00000119402|Q9UKT8-2|FBXW2;ENSG00000119402|ENST00000608872|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7786865234375	2	470.272158	938.529764	0.26364	0.00012398	-1.6521	-0.00077692	-1.3884	-0.00065294	470.27207910775746	82.882	0.46096	82.955	82.778	83.239	0.07309					23	17	2	0	0	0	0.25202	1	21613	21613		10.824	0	1	69061			43315	2875	25041	25042	52785	52785					0.058040093658974
SLIGMGLFM	9	Unmodified	_SLIGMGLFM_					0	0	0		ENSG00000136546|ENST00000643258|SCN7A;SCN7A|p.R1640Lfs*12|1|0.04|ENSG00000136546|chr2:166405712-166405713|-/AATAAAAGAAAAGTAGAGA|frameshift_variant	ENSG00000136546|ENST00000643258|SCN7A	ENSG00000136546|ENST00000643258|SCN7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.8161926269531	2	484.750824	967.487096	0.37524	0.0001819	0.58081	0.00028155	0.95605	0.00046344	484.7509373776765	26.439	0.37279	26.416	26.212	26.584	-0.022238					16	12	2	0	0	0	0.25526	1	4356	4356		7.9102	0	1	47938			43316	3982	25042	25043	52786	52786					0.002051549218094806
SLIGPRYKL	9	Unmodified	_SLIGPRYKL_					0	0	0		ENSG00000163898|ENST00000296252|LIPH	ENSG00000163898|ENST00000296252|LIPH	ENSG00000163898|ENST00000296252|LIPH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.313720703125	2	523.821484	1045.62842	0.66029	0.00034587	-0.12153	-6.3661E-05	0.53876	0.00028221	523.8213396170094	38.858	0.25704	38.957	38.76	39.017	0.099403					12	8	2	0	0	0	0.2451	1	8097	8097		6.7232	0.51738	1	130280			43317	5752	25043	25044	52787	52787					0.10742612610920332
SLIGYLITK	9	Unmodified	_SLIGYLITK_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.3106689453125	2	504.310418	1006.60628	0.4317	0.00021771	0.45722	0.00023058	0.88893	0.00044829	504.3104891783709	63.584	0.82359	63.584	63.256	64.079	0					84	29	4	0	0	0	0.0040516	3	15799	15748;15799;15852		93.938	48.239	1	2182900			43318	7784;12506	25044	25045	52788;52789;52790	52789					0.10324388142521457
SLIGYLITK	9	Unmodified	_SLIGYLITK_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.3109436035156	2	504.310418	1006.60628	0.43225	0.00021799	0.51012	0.00025726	0.94236	0.00047524	504.3105273498725	63.441	0.89468	63.536	63.148	64.043	0.095722					71	31	3	0	0	0	0.0035713	2	15695	15695;15747		97.741	52.041	1	2099500			43319	7784;12506	25044	25045	52791;52792	52791					0.10324388142521457
SLIGYLITK	9	Unmodified	_SLIGYLITK_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.31072998046875	2	504.310418	1006.60628	0.49359	0.00024892	0.22849	0.00011523	0.72208	0.00036415	504.31039602561737	63.619	0.85777	63.61	63.217	64.075	-0.0085526					76	30	4	0	0	0	0.0066776	3	15789	15740;15789;15841		84.522	44.302	1	2316000			43320	7784;12506	25044	25045	52793;52794;52795	52794					0.10324388142521457
SLIHALFL	8	Unmodified	_SLIHALFL_					0	0	0			REV__ENSG00000143799|ENST00000366794|PARP1	REV__ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.24053955078125	2	457.278921	912.543289	0.2389	0.00010924	-0.90419	-0.00041347	-0.66529	-0.00030422	457.27854459300227	23.93	0.48719	23.891	23.506	23.993	-0.038927					21	16	2	0	0	0	0.3439	1	3506	3506		2.8892	0	1	23363	+		43321	16201	25045	25046	52796	52796					0.08351867145120195
SLIHALFL	8	Unmodified	_SLIHALFL_					0	0	0			REV__ENSG00000143799|ENST00000366794|PARP1	REV__ENSG00000143799|ENST00000366794|PARP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	457.278921	912.543289	0.065274	2.9849E-05	-1.3843	-0.000633	-1.319	-0.00060315	457.2782889878574	23.816	0.43586	23.744	23.588	24.024	-0.072559	-0.073717	-0.00032138	NaN	2.8892	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24466	+		43322	16201	25045	25046							0.08351867145120195
SLIISPTTLFF	11	Unmodified	_SLIISPTTLFF_					0	0	0			REV__ENSG00000196187|ENST00000366835|TMEM63A	REV__ENSG00000196187|ENST00000366835|TMEM63A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5726013183594	3	413.572552	1237.69583	0.16955	7.0121E-05	0.072982	3.0183E-05	0.24253	0.0001003	413.5726237152483	28.645	1.3973	28.641	28.306	29.703	-0.0042572					120	48	4	0	0	0	0.3826	1	4981	4981		13.519	0	1	2000100	+		43323	18628	25046	25047	52797	52797					0.08648598031209076
SLIKHKIML	9	Oxidation (M)	_SLIKHKIM(Oxidation (M))L_		SLIKHKIM(1)L		SLIKHKIM(93)L	0	0	1		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.8391723632812	2	549.83882	1097.66309	0.24963	0.00013726	0.8186	0.0004501	1.0682	0.00058735	549.8390575658954	31.568	0.64892	31.568	31.333	31.982	0					59	22	4	0	0	0	0.0041491	3	5895	5895;5941;5998		93.166	57.039	1	3599600			43324	2575	25047	25048	52798;52799;52800	52798		322			0.1181611242739109
SLIKHKIML	9	Oxidation (M)	_SLIKHKIM(Oxidation (M))L_		SLIKHKIM(1)L		SLIKHKIM(83)L	0	0	1		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.8392333984375	2	549.83882	1097.66309	0.34248	0.00018831	0.66265	0.00036435	1.0051	0.00055266	549.8390157458608	31.517	0.56297	31.559	31.347	31.909	0.042364					52	19	4	0	0	0	0.0073901	3	5925	5881;5925;5972		83.429	47.302	1	3968500			43325	2575	25047	25048	52801;52802;52803	52802		322			0.1181611242739109
SLIKHKIML	9	Oxidation (M)	_SLIKHKIM(Oxidation (M))L_		SLIKHKIM(1)L		SLIKHKIM(86)L	0	0	1		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.8392944335938	2	549.83882	1097.66309	0.42493	0.00023365	0.65105	0.00035797	1.076	0.00059162	549.8389950005225	31.497	0.64306	31.538	31.306	31.949	0.040991					62	22	4	0	0	0	0.0054984	3	5922	5870;5922;5969		86.332	50.205	1	3608100			43326	2575	25047	25048	52804;52805;52806	52805		322			0.1181611242739109
SLILHQRF	8	Unmodified	_SLILHQRF_					0	0	0		ENSG00000186448|ENST00000344387|ZNF197	ENSG00000186448|ENST00000344387|ZNF197	ENSG00000186448|ENST00000344387|ZNF197	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.30975341796875	2	507.298176	1012.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.843	1	93.843	93.343	94.343	-0.00051117								0	0	0	0.36336	1	25006	25006		8.5933	1.304	1				43327	7616	25048	25049	52807	52807					0.07601172779664012
SLILRWAL	8	Unmodified	_SLILRWAL_					0	0	0			REV__ENST00000216237.9_1_22:41626261-41626363:+|nuORF	REV__ENST00000216237.9_1_22:41626261-41626363:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2749328613281	2	486.30547	970.596387	0.2946	0.00014326	-0.12932	-6.2887E-05	0.16528	8.0377E-05	486.30532203869996	30.513	0.65544	30.541	30.298	30.954	0.027946					50	22	3	0	0	0	0.31088	1	5573	5573		28.487	0	1	486870	+		43328	19410	25049	25050	52808	52808					0.10991244927777188
SLINAYHGS	9	Unmodified	_SLINAYHGS_					0	0	0			REV__ENST00000405257.1_1_6:4703010-4703685:+|nuORF	REV__ENST00000405257.1_1_6:4703010-4703685:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2422790527344	2	481.240524	960.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.998	1	87.995	87.495	88.495	-0.0028381								0	0	0	0.2489	1	23213	23213		6.7232	0	1		+		43329	20731	25050	25051	52809	52809					-0.015319761420073519
SLINQKKK	8	Unmodified	_SLINQKKK_					0	0	0		ENSG00000092054|ENST00000355349|MYH7;ENSG00000197616|ENST00000405093|MYH6	ENSG00000092054|ENST00000355349|MYH7	ENSG00000092054|ENST00000355349|MYH7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2898254394531	2	479.805834	957.597115	0.055628	2.6691E-05	-0.27892	-0.00013383	-0.22329	-0.00010714	479.80571196668734	18.214	0.46153	18.096	17.896	18.358	-0.11739					29	15	3	0	0	0	0.34408	1	1905	1905		2.3027	2.3027	1	80854			43330	1416	25051	25052	52810	52810					0.11662039576845018
SLIQFFSKM	9	Unmodified	_SLIQFFSKM_					0	0	0		nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1	nc|ENSG00000080839|P28749-2|RBL1	nc|ENSG00000080839|P28749-2|RBL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.3350219726562	2	550.794078	1099.5736	0.12199	6.719E-05	0.10232	5.6355E-05	0.2243	0.00012355	550.7939382618463	12.934	0.25121	12.835	12.729	12.98	-0.09929					14	8	2	0	0	0	0.26168	1	304	304		1.8442	0	1	95960			43331	1168	25052	25053	52811	52811					0.027798577480325548
SLIQFFSKM	9	Unmodified	_SLIQFFSKM_					0	0	0		nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1	nc|ENSG00000080839|P28749-2|RBL1	nc|ENSG00000080839|P28749-2|RBL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	550.794078	1099.5736	-0.012942	-7.1283E-06	0.12824	7.0635E-05	0.1153	6.3506E-05	550.7940945593112	12.904	0.20212	12.836	12.734	12.936	-0.067496	0.00048394	1.26E-05	NaN	1.8442	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78975			43332	1168	25052	25053							0.027798577480325548
SLIQRLPSG	9	Unmodified	_SLIQRLPSG_					0	0	0			REV__ENST00000390345.2_3_7:38393854-38394076:-|nuORF	REV__ENST00000390345.2_3_7:38393854-38394076:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7793884277344	2	485.787641	969.56073	0.85216	0.00041397	0.28596	0.00013892	1.1381	0.00055289	485.7881160827558	50.287	0.20967	50.308	50.177	50.387	0.020691					18	7	3	0	0	0	0.24581	1	11633	11633		16.942	0.79319	1	201950	+		43333	20582	25053	25054	52812	52812					0.07473162680139467
SLISAVAAIIF	11	Unmodified	_SLISAVAAIIF_					0	0	0			REV__ENSG00000013293|ENST00000231706|SLC7A14	REV__ENSG00000013293|ENST00000231706|SLC7A14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.8373413085938	2	552.8368	1103.65905	0.54739	0.00030261	0.46852	0.00025901	1.0159	0.00056163	552.8370520949097	72.318	0.7884	72.374	71.922	72.71	0.056572					72	28	3	0	0	0	0.16442	1	18474	18474		34.402	2.3642	1	638240	+		43334	13443	25054	25055	52813	52813					0.11136346205330483
SLISQLGSIF	10	Unmodified	_SLISQLGSIF_					0	0	0			REV__ENST00000470300.5_1_1:247027247-247061635:-|nuORF	REV__ENST00000470300.5_1_1:247027247-247061635:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.839599609375	2	532.802957	1063.59136	0.40497	0.00021577	-1.6479	-0.000878	-1.2429	-0.00066223	532.8013944613209	42.998	0.87772	42.998	42.355	43.233	0					52	31	2	0	0	0	0.31039	1	9466	9466		13.042	0	1	283070	+		43335	21348	25055	25056	52814	52814					0.062108962745242025
SLISSFPLLK	10	Unmodified	_SLISSFPLLK_					0	0	0		ENSG00000243955|ENST00000334575|GSTA1;ENSG00000244067|ENST00000493422|GSTA2;ENSG00000182793|ENST00000370989|GSTA5	ENSG00000243955|ENST00000334575|GSTA1	ENSG00000243955|ENST00000334575|GSTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8372192382812	2	552.8368	1103.65905	0.43527	0.00024063	0.54469	0.00030112	0.97996	0.00054176	552.8370568079912	72.294	0.81477	72.294	71.911	72.726	0					70	29	3	0	0	0	0.025736	1	18437	18437		65.474	31.072	1	691200			43336	8563	25056	25057	52815	52815					0.11136346205330483
SLISSFPLLK	10	Unmodified	_SLISSFPLLK_					0	0	0		ENSG00000243955|ENST00000334575|GSTA1;ENSG00000244067|ENST00000493422|GSTA2;ENSG00000182793|ENST00000370989|GSTA5	ENSG00000243955|ENST00000334575|GSTA1	ENSG00000243955|ENST00000334575|GSTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.8370971679688	2	552.8368	1103.65905	0.54739	0.00030261	0.46852	0.00025901	1.0159	0.00056163	552.8370520949097	72.318	0.7884	72.374	71.922	72.71	0.056572					72	28	3	0	0	0	0.017732	1	18423	18423		74.2	24.267	1	638240			43337	8563	25056	25057	52816	52816					0.11136346205330483
SLISSFPLLK	10	Unmodified	_SLISSFPLLK_					0	0	0		ENSG00000243955|ENST00000334575|GSTA1;ENSG00000244067|ENST00000493422|GSTA2;ENSG00000182793|ENST00000370989|GSTA5	ENSG00000243955|ENST00000334575|GSTA1	ENSG00000243955|ENST00000334575|GSTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.83740234375	2	552.8368	1103.65905	0.43463	0.00024028	0.60011	0.00033176	1.0347	0.00057204	552.8371376771796	72.37	0.75884	72.343	71.953	72.712	-0.027275					64	26	3	0	0	0	0.015324	1	18469	18469		76.825	18.146	1	639070			43338	8563	25056	25057	52817	52817					0.11136346205330483
SLITGYSFLFE	11	Unmodified	_SLITGYSFLFE_					0	0	0			REV__ENSG00000168038|ENST00000301831|ULK4	REV__ENSG00000168038|ENST00000301831|ULK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.22027587890625	3	426.220178	1275.63871	-0.18916	-8.0625E-05	0.47051	0.00020054	0.28135	0.00011992	426.2204374216413	26.483	1.2128	26.445	25.985	27.198	-0.038671					105	42	4	0	0	0	0.4112	1	4416	4416		9.7643	1.8189	1	1101800	+		43339	17434	25057	25058	52818	52818					0.011911307548416517
SLITLHWF	8	Unmodified	_SLITLHWF_					0	0	0		ENST00000478085.5_1_22:40800171-40802852:+|nuORF;ENSG00000100359|ENST00000248929|SGSM3;nc|ENSG00000100359|Q96HU1-2|SGSM3	ENST00000478085.5_1_22:40800171-40802852:+|nuORF	ENST00000478085.5_1_22:40800171-40802852:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8103942871094	2	508.781828	1015.5491	0.43016	0.00021886	3.2744	0.0016659	3.7045	0.0018848	509.2855432636394	64.108	0.21774	64.201	64.116	64.334	0.09288					10	7	2	0	0	0	0.34046	1	15884	15884		14.582	7.2925	1	79059			43340	1580	25058	25059	52819	52819					0.041949656568021965
SLITSYQPF	9	Unmodified	_SLITSYQPF_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8140869140625	2	528.274032	1054.53351	0.25507	0.00013475	3.2673	0.0017261	3.5224	0.0018608	528.2756223541476	40.916	0.35054	41.013	40.909	41.259	0.096622					19	12	2	0	0	0	0.23783	1	8741	8741		7.9102	0	1	326230			43341	542	25059	25060	52820	52820					0.008426343491009902
SLIVKVVRR	9	Unmodified	_SLIVKVVRR_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.830078125	2	535.36385	1068.71315	0.059701	3.1962E-05	0.070818	3.7914E-05	0.13052	6.9876E-05	535.3637239396414	27.74	0.45148	27.729	27.499	27.95	-0.01156					24	15	2	0	0	0	0.25938	1	4709	4709		4.3292	0	1	140910			43342	2462	25060	25061	52821	52821					0.18153983147567487
SLIVKVVRR	9	Unmodified	_SLIVKVVRR_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	535.36385	1068.71315	0.19979	0.00010696	-0.07709	-4.1271E-05	0.1227	6.5688E-05	535.3636562633393	27.76	0.45171	27.76	27.53	27.981	0	0.018456	-6.3125E-05	NaN	4.3292	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154530			43343	2462	25060	25061							0.18153983147567487
SLIVKVVRR	9	Unmodified	_SLIVKVVRR_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	535.36385	1068.71315	-0.010189	-5.4549E-06	-0.037431	-2.0039E-05	-0.04762	-2.5494E-05	535.3637843877375	27.757	0.51311	27.736	27.493	28.006	-0.021412	-0.0056642	-2.0661E-05	NaN	4.3292	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173360			43344	2462	25060	25061							0.18153983147567487
SLIWIREV	8	Unmodified	_SLIWIREV_					0	0	0			REV__ENST00000380122.9_2_X:16861892-16862162:+|nuORF	REV__ENST00000380122.9_2_X:16861892-16862162:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.790771484375	2	508.300384	1014.58622	0.30415	0.0001546	-0.2139	-0.00010872	0.090253	4.5876E-05	508.3003645709911	58.966	0.73136	59.057	58.677	59.408	0.091301					49	25	3	0	0	0	0.31617	1	14370	14370		20.454	3.5113	1	772750	+		43345	20541	25061	25062	52822	52822					0.07950637202566213
SLKDEQKK	8	Unmodified	_SLKDEQKK_					0	0	0		ENST00000465942.1_1_13:46065604-46085992:+|nuORF;ENSG00000136152|ENST00000349995|COG3	ENST00000465942.1_1_13:46065604-46085992:+|nuORF	ENST00000465942.1_1_13:46065604-46085992:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.254150390625	2	488.277106	974.53966	0.34629	0.00016909	-2.0629	-0.0010073	-1.7166	-0.00083819	488.2756591030693	21.822	0.36011	21.721	21.557	21.917	-0.10034					24	12	2	0	0	0	0.3408	1	2944	2944		14.838	0	1	71671			43346	3947	25062	25063	52823	52823					0.051371525806075624
SLKDHKVSF	9	Unmodified	_SLKDHKVSF_					0	0	0		ENSG00000172375|ENST00000648610|C2CD2L;nc|ENSG00000172375|O14523-2|C2CD2L	ENSG00000172375|ENST00000648610|C2CD2L	ENSG00000172375|ENST00000648610|C2CD2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2352294921875	2	530.792924	1059.57129	0.36446	0.00019345	-0.30052	-0.00015951	0.063935	3.3936E-05	530.7926605031298	42.341	0.72106	42.426	42.034	42.755	0.085197					55	25	3	0	0	0	0.24913	1	9118	9118		12.532	1.7076	1	501310			43347	6628	25063	25064	52824	52824					0.04389145334562272
SLKDHKVSF	9	Unmodified	_SLKDHKVSF_					0	0	0		ENSG00000172375|ENST00000648610|C2CD2L;nc|ENSG00000172375|O14523-2|C2CD2L	ENSG00000172375|ENST00000648610|C2CD2L	ENSG00000172375|ENST00000648610|C2CD2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2354125976562	2	530.792924	1059.57129	0.51799	0.00027495	-0.50364	-0.00026733	0.014353	7.6183E-06	530.7926744195776	42.274	0.73154	42.365	42.095	42.827	0.091362					44	25	2	0	0	0	0.24913	1	9111	9111		4.3292	0.38484	1	565940			43348	6628	25063	25064	52825	52825					0.04389145334562272
SLKDHKVSF	9	Unmodified	_SLKDHKVSF_					0	0	0		ENSG00000172375|ENST00000648610|C2CD2L;nc|ENSG00000172375|O14523-2|C2CD2L	ENSG00000172375|ENST00000648610|C2CD2L	ENSG00000172375|ENST00000648610|C2CD2L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	530.792924	1059.57129	0.25019	0.0001328	-0.084077	-4.4628E-05	0.16612	8.8174E-05	530.7928032527494	42.598	0.70391	42.598	42.33	43.034	0	0.13469	0.00028076	NaN	7.9102	59	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	525510			43349	6628	25063	25064							0.04389145334562272
SLKELQVKL	9	Unmodified	_SLKELQVKL_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3004150390625	2	529.334424	1056.6543	0.32781	0.00017352	-0.12283	-6.5019E-05	0.20498	0.0001085	529.3341842483533	52.355	0.35408	52.354	52.141	52.495	-0.00080872					26	12	3	0	0	0	0.22674	1	12241	12241		22.736	1.1993	1	332650			43350	8109	25064	25065	52826	52826					0.12823462062578983
SLKESVDHLE	10	Unmodified	_SLKESVDHLE_					0	0	0			REV__ENST00000553956.6_1_17:62510355-62528036:+|nuORF	REV__ENST00000553956.6_1_17:62510355-62528036:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3138427734375	2	578.79586	1155.57717	0.35272	0.00020415	0.22345	0.00012933	0.57618	0.00033349	578.7960127324599	28.985	0.65628	28.985	28.729	29.385	0					41	23	3	0	0	0	0.31867	1	5161	5161		18.146	3.3081	1	380220	+		43351	19272	25065	25066	52827	52827					0.005601990555760494
SLKGHRWRT	9	Unmodified	_SLKGHRWRT_					0	0	0		ENST00000521141.1_1_8:22613398-22614593:+|nuORF	ENST00000521141.1_1_8:22613398-22614593:+|nuORF	ENST00000521141.1_1_8:22613398-22614593:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8220825195312	2	570.822881	1139.63121	0.12836	7.3272E-05	0.3739	0.00021343	0.50226	0.0002867	570.8230152650983	14.961	0.77476	14.851	14.51	15.285	-0.10981					41	27	2	0	0	0	0.33508	1	935	935		3.5965	0	1	146450			43352	11485	25066	25067	52828	52828					0.06697880788465227
SLKGKERRQL	10	Unmodified	_SLKGKERRQL_					0	0	0		ENST00000464081.1_2_1:43232977-43241062:+|nuORF	ENST00000464081.1_2_1:43232977-43241062:+|nuORF	ENST00000464081.1_2_1:43232977-43241062:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5254821777344	3	405.582444	1213.7255	-0.28776	-0.00011671	-1.4263	-0.00057849	-1.7141	-0.0006952	405.58164748271474	18.716	0.34691	18.599	18.414	18.761	-0.11739					16	11	2	0	0	0	0.32033	1	2011	2011		4.1895	0	1	29351			43353	10779	25067	25068	52829	52829					0.12718974819927098
SLKGQLHN	8	Unmodified	_SLKGQLHN_					0	0	0			REV__ENSG00000120937|ENST00000376468|NPPB	REV__ENSG00000120937|ENST00000376468|NPPB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2476806640625	2	448.751059	895.487565	0.18084	8.1154E-05	-1.179	-0.00052909	-0.99818	-0.00044793	448.7504820073509	24.923	0.75472	24.923	24.605	25.359	0					49	25	2	0	0	0	0.344	1	4023	4023		2.5775	0	1	153020	+		43354	15103	25068	25069	52830	52830					0.03564033957502488
SLKGWTIEKGN	11	Unmodified	_SLKGWTIEKGN_					0	0	0			REV__ENST00000479480.5_1_1:41450594-41453082:+|nuORF	REV__ENST00000479480.5_1_1:41450594-41453082:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2348937988281	3	411.559305	1231.65609	0.15234	6.2696E-05	2.0771	0.00085486	2.2295	0.00091755	411.5603321575782	38.264	0.22129	38.361	38.32	38.542	0.097527					11	7	2	0	0	0	0.32477	1	7955	7955		6.2344	0	1	79535	+		43355	21468	25069	25070	52831	52831					0.04952471080514442
SLKHASFL	8	Unmodified	_SLKHASFL_					0	0	0		ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A	ENSG00000183873|ENST00000423572|SCN5A	ENSG00000183873|ENST00000423572|SCN5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7765197753906	2	451.758352	901.502152	0.30309	0.00013692	0.0020384	9.2087E-07	0.30513	0.00013785	451.75837138235084	58.441	0.43709	58.441	58.187	58.624	0					24	14	2	0	0	0	0.30503	1	14178	14178		30.225	0	1	295680			43356	7417	25070	25071	52832	52832					0.0474610610565378
SLKHASFL	8	Unmodified	_SLKHASFL_					0	0	0		ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A	ENSG00000183873|ENST00000423572|SCN5A	ENSG00000183873|ENST00000423572|SCN5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.77655029296875	2	451.758352	901.502152	0.21476	9.7018E-05	0.22024	9.9497E-05	0.435	0.00019651	451.7583885296588	58.318	0.44348	58.403	58.162	58.606	0.085621					25	15	2	0	0	0	0.32435	1	14109	14109		23.148	0	1	289830			43357	7417	25070	25071	52833	52833					0.0474610610565378
SLKHASFL	8	Unmodified	_SLKHASFL_					0	0	0		ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A	ENSG00000183873|ENST00000423572|SCN5A	ENSG00000183873|ENST00000423572|SCN5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7764587402344	2	451.758352	901.502152	0.5956	0.00026907	-0.027845	-1.2579E-05	0.56775	0.00025649	451.75839622190654	58.371	0.51526	58.357	58.141	58.656	-0.014267					30	18	3	0	0	0	0.30503	1	14162	14162		30.225	0	1	286140			43358	7417	25070	25071	52834	52834					0.0474610610565378
SLKIVHSKIF	10	Unmodified	_SLKIVHSKIF_					0	0	0			REV__ENSG00000198092|ENST00000356291|TMPRSS11F	REV__ENSG00000198092|ENST00000356291|TMPRSS11F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.2252807617188	2	586.363516	1170.71248	0.24611	0.00014431	0.011288	6.6187E-06	0.2574	0.00015093	586.36342500268	67.485	0.63486	67.469	67.236	67.871	-0.016296					66	21	4	0	0	0	0.31482	1	17057	17057		7.2892	0	1	1111900	+		43359	18798	25071	25072	52835	52835					0.13395143707839452
SLKIWGKKR	9	Unmodified	_SLKIWGKKR_					0	0	0		nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5	nc|ENSG00000165521|Q05BV3|EML5	nc|ENSG00000165521|Q05BV3|EML5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3563842773438	2	558.356025	1114.6975	0.52181	0.00029136	-0.17155	-9.5784E-05	0.35026	0.00019557	558.355817026375	51.153	0.74676	51.153	50.872	51.619	0					83	27	4	0	0	0	0.29176	1	12046	12046		10.074	0	1	4766700			43360	5971	25072	25073	52836	52836					0.14473696630511768
SLKKEELI	8	Unmodified	_SLKKEELI_					0	0	0			REV__ENSG00000110887|ENST00000228476|DAO	REV__ENSG00000110887|ENST00000228476|DAO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2777404785156	2	480.292225	958.569897	0.55058	0.00026444	-0.16209	-7.7852E-05	0.38849	0.00018659	480.2921655345402	47.705	0.29409	47.749	47.53	47.824	0.04332					18	10	2	0	0	0	0.3671	1	10810	10810		23.148	0	1	295170	+		43361	14690	25073	25074	52837	52837					0.08895511245816579
SLKKHVVTI	9	Unmodified	_SLKKHVVTI_					0	0	0			REV__ZNF800|p.S545L|1|0.36|ENSG00000048405|chr7:127373702-127373702|G/A|missense_variant	REV__ZNF800|p.S545L|1|0.36|ENSG00000048405|chr7:127373702-127373702|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7207641601562	2	512.829309	1023.64407	0.51941	0.00026637	0.097489	4.9995E-05	0.6169	0.00031637	512.8293964974895	55.752	0.50311	55.752	55.46	55.963	0					27	17	2	0	0	0	0.20881	1	13348	13348		21.537	3.3906	1	335290	+		43362	23364	25074	25075	52838	52838					0.13318899127989425
SLKKHVVTI	9	Unmodified	_SLKKHVVTI_					0	0	0			REV__ZNF800|p.S545L|1|0.36|ENSG00000048405|chr7:127373702-127373702|G/A|missense_variant	REV__ZNF800|p.S545L|1|0.36|ENSG00000048405|chr7:127373702-127373702|G/A|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	512.829309	1023.64407	0.54751	0.00028078	0.28001	0.0001436	0.82752	0.00042438	512.829482334767	55.724	0.48544	55.795	55.473	55.958	0.070885	0.037935	-3.7384E-05	NaN	21.537	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357260	+		43363	23364	25074	25075							0.13318899127989425
SLKLPDKTL	9	Unmodified	_SLKLPDKTL_					0	0	0		ENST00000379752.5_1_1:157030233-157030518:-|nuORF;ENSG00000122692|ENST00000397149|SMU1	ENST00000379752.5_1_1:157030233-157030518:-|nuORF	ENST00000379752.5_1_1:157030233-157030518:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3019104003906	2	507.813325	1013.6121	0.090064	4.5736E-05	0.11288	5.7324E-05	0.20295	0.00010306	507.8132734448262	52.176	1.0372	52.175	51.602	52.639	-0.00081253					96	37	5	0	0	0	0.25989	1	12279	12279		14.838	0	1	1202000			43364	3063	25075	25076	52839	52839					0.10583486654184071
SLKLVKSLQAF	11	Unmodified	_SLKLVKSLQAF_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.23480224609375	3	411.923696	1232.74926	0.25392	0.0001046	0.39338	0.00016204	0.6473	0.00026664	412.2581738031969	38.452	0.35281	38.543	38.294	38.647	0.090881					18	12	2	0	0	0	0.33146	1	7991	7991		2.2527	0.92309	1	97570	+		43365	13235	25076	25077	52840	52840					0.14219395533746138
SLKMVNEK	8	Unmodified	_SLKMVNEK_					0	0	0			REV__ENSG00000135226|ENST00000335568|UGT2B28	REV__ENSG00000135226|ENST00000335568|UGT2B28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.7626037597656	2	474.762778	947.511002	0.23182	0.00011006	-0.19444	-9.2313E-05	0.037382	1.7747E-05	474.76260185968954	21.642	0.67544	21.593	21.179	21.855	-0.049377					48	23	3	0	0	0	0.3474	1	2949	2949		25.399	0	1	148360	+		43366	15727	25077	25078	52841	52841					0.03514711679827087
SLKRLFIERPE	11	Unmodified	_SLKRLFIERPE_					0	0	0		ENSG00000174032|ENST00000519676|SLC25A30;nc|ENSG00000174032|Q5SVS4-2|SLC25A30	ENSG00000174032|ENST00000519676|SLC25A30	ENSG00000174032|ENST00000519676|SLC25A30	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.8006286621094	3	463.273388	1386.79833	0.11374	5.2694E-05	-1.5374	-0.00071222	-1.4236	-0.00065953	463.2725242046483	36.529	0.48658	36.529	36.358	36.844	0					23	16	2	0	0	0	0.33236	1	7461	7461		4.4062	0.28952	1	165040			43367	6769	25078	25079	52842	52842					0.12040683822715437
SLKRVLSLL	9	Unmodified	_SLKRVLSLL_					0	0	0			REV__ENSG00000136813|ENST00000684092|ECPAS	REV__ENSG00000136813|ENST00000684092|ECPAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.27197265625	2	514.844959	1027.67537	0.58013	0.00029868	-0.5491	-0.0002827	0.031034	1.5978E-05	514.8446514629641	47.795	0.24162	47.795	47.608	47.849	0					10	8	2	0	0	0	0.24289	1	10885	10885		18.146	7.3224	1	541940	+		43368	15826	25079	25080	52843	52843					0.16263472162086146
SLKRVLSLL	9	Unmodified	_SLKRVLSLL_					0	0	0			REV__ENSG00000136813|ENST00000684092|ECPAS	REV__ENSG00000136813|ENST00000684092|ECPAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2720947265625	2	514.844959	1027.67537	0.43494	0.00022393	-0.54261	-0.00027936	-0.10768	-5.5437E-05	515.3462184101576	47.719	0.23811	47.762	47.611	47.85	0.04332					11	8	2	0	0	0	0.23235	1	10829	10829		21.537	3.402	1	364880	+		43369	15826	25079	25080	52844	52844					0.16263472162086146
SLKRYQLL	8	Unmodified	_SLKRYQLL_					0	0	0			REV__ENSG00000204764|ENST00000523189|RANBP17	REV__ENSG00000204764|ENST00000523189|RANBP17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8141784667969	2	510.813659	1019.61277	0.6488	0.00033142	-0.31409	-0.00016044	0.33471	0.00017097	510.813419229683	50.045	0.83458	50.09	49.877	50.711	0.044891					92	30	4	0	0	0	0.32038	1	11663	11663		28.487	3.0875	1	2359100	+		43370	18963	25080	25081	52845	52845					0.10374326093892705
SLKSCRDWRL	10	Unmodified	_SLKSCRDWRL_					0	0	0		ENST00000389048.7_2_2:30143734-30144202:-|nuORF	ENST00000389048.7_2_2:30143734-30144202:-|nuORF	ENST00000389048.7_2_2:30143734-30144202:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.89227294921875	3	421.892401	1262.65538	-0.15055	-6.3515E-05	0.12938	5.4584E-05	-0.02117	-8.9316E-06	421.89241950326493	26.499	0.8747	26.499	26.133	27.007	0					49	30	2	0	0	0	0.3641	1	4417	4417		5.7834	0	1	233110			43371	10018	25081	25082	52846	52846					0.03455353159824881
SLKTAQLHR	9	Unmodified	_SLKTAQLHR_					0	0	0		L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|18|1|sense;L1PA3_dup8093|chr11:58696286-58700694:-|8.889446604907338|0.3518458624306171|4.66|529.0|36|2|sense	L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|18|1|sense	L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|18|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7684326171875	2	527.311815	1052.60908	0.56063	0.00029563	-0.26682	-0.0001407	0.29381	0.00015493	527.3115723133237	26.347	0.53569	26.325	26.105	26.64	-0.022236					28	18	2	0	0	0	0.25066	1	4346	4346		11.64	4.3511	1	153340			43372	12478	25082	25083	52847	52847					0.08487656320016868
SLKTGVQKA	9	Unmodified	_SLKTGVQKA_					0	0	0			REV__nc|ENSG00000173253|Q9Y5R5-3|DMRT2	REV__nc|ENSG00000173253|Q9Y5R5-3|DMRT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2818298339844	2	466.282192	930.549831	-0.33216	-0.00015488	-0.18267	-8.5176E-05	-0.51483	-0.00024006	466.2820060430188	13.298	0.1954	13.298	13.2	13.396	0					13	6	3	0	0	0	0.34809	1	406	406		1.6526	0.96225	1	59440	+		43373	17773	25083	25084	52848	52848					0.08177760305841275
SLKTGVQKA	9	Unmodified	_SLKTGVQKA_					0	0	0			REV__nc|ENSG00000173253|Q9Y5R5-3|DMRT2	REV__nc|ENSG00000173253|Q9Y5R5-3|DMRT2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	466.282192	930.549831	-0.31699	-0.00014781	-0.16642	-7.76E-05	-0.48341	-0.00022541	466.2820740440978	13.368	0.26027	13.268	13.129	13.389	-0.099291	-0.014897	9.3066E-06	NaN	1.6526	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63154	+		43374	17773	25083	25084							0.08177760305841275
SLKTQKPA	8	Unmodified	_SLKTQKPA_					0	0	0		ENST00000298532.2_1_9:139290131-139291448:-|nuORF	ENST00000298532.2_1_9:139290131-139291448:-|nuORF	ENST00000298532.2_1_9:139290131-139291448:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.26141357421875	2	436.763635	871.512717	0.17218	7.5201E-05	-0.95311	-0.00041628	-0.78093	-0.00034108	436.7632341950748	32.657	0.5781	32.713	32.395	32.973	0.055309					28	20	2	0	0	0	0.34218	1	6298	6298		9.3474	0	1	173780			43375	9207	25084	25085	52849	52849					0.07182088760077932
SLKYWLSSER	10	Unmodified	_SLKYWLSSER_					0	0	0		ENST00000335142.5_1_14:56043911-56046785:-|nuORF;ENST00000554558.5_1_14:55966046-56046785:-|nuORF	ENST00000335142.5_1_14:56043911-56046785:-|nuORF	ENST00000335142.5_1_14:56043911-56046785:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.5578308105469	3	423.559305	1267.65609	-0.43014	-0.00018219	-2.8463	-0.0012056	-3.2764	-0.0013877	423.55789327615787	13.513	0.51944	13.414	13.249	13.768	-0.099291					43	18	3	0	0	0	0.35637	1	451	451		7.0371	0	1	207630			43376	9476	25085	25086	52850	52850					0.03296471080511765
SLLAKVFIT	9	Unmodified	_SLLAKVFIT_					0	0	0		ENSG00000187736|ENST00000356853|NHEJ1;nc|ENSG00000187736|Q9H9Q4-2|NHEJ1	ENSG00000187736|ENST00000356853|NHEJ1	ENSG00000187736|ENST00000356853|NHEJ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.31304931640625	2	496.312961	990.611368	0.47515	0.00023582	-2.8494	-0.0014142	-2.3743	-0.0011784	496.3125364465115	82.232	1.0001	82.232	81.844	82.844	0					67	36	3	0	0	0	0.28128	1	21446	21446		11.64	0	1	291130			43377	7705	25086	25087	52851	52851					0.11568692005130288
SLLAKVFIT	9	Unmodified	_SLLAKVFIT_					0	0	0		ENSG00000187736|ENST00000356853|NHEJ1;nc|ENSG00000187736|Q9H9Q4-2|NHEJ1	ENSG00000187736|ENST00000356853|NHEJ1	ENSG00000187736|ENST00000356853|NHEJ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.31268310546875	2	496.312961	990.611368	0.44318	0.00021996	-3.2776	-0.0016267	-2.8344	-0.0014068	496.3127165432143	82.223	1.1969	82.199	81.906	83.103	-0.024048					112	46	4	0	0	0	0.24581	1	21436	21436		16.942	0	1	565540			43378	7705	25086	25087	52852	52852					0.11568692005130288
SLLAKVFIT	9	Unmodified	_SLLAKVFIT_					0	0	0		ENSG00000187736|ENST00000356853|NHEJ1;nc|ENSG00000187736|Q9H9Q4-2|NHEJ1	ENSG00000187736|ENST00000356853|NHEJ1	ENSG00000187736|ENST00000356853|NHEJ1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	496.312961	990.611368	0.33009	0.00016383	-3.0764	-0.0015269	-2.7463	-0.001363	496.3127831705593	82.13	0.92476	82.199	81.849	82.774	0.068993	-0.010821	2.077E-05	NaN	16.942	100	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385580			43379	7705	25086	25087							0.11568692005130288
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8837890625	2	641.883136	1281.75172	0.043752	2.8084E-05	-0.15572	-9.9951E-05	-0.11196	-7.1868E-05	642.3846931450247	97.965	0.16931	97.965	97.914	98.084	0					24	18	2	0	0	0	0.47546	1	26209	26209		1.3295	0	1	110420			43380	11941	25087	25088	52853	52853					0.12211243991373522
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8814697265625	2	641.883136	1281.75172	-0.017489	-1.1226E-05	-0.38369	-0.00024629	-0.40118	-0.00025751	641.882717023579	99.676	0.37461	99.676	99.494	99.869	0					85	49	2	0	0	0	0.47546	1	26627	26627		1.3295	0	1	99395			43381	11941	25087	25088	52854	52854					0.12211243991373522
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8834228515625	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.669	1	97.669	97.169	98.169	0								0	0	0	0.38114	1	26124	26124		1.3295	0	1				43382	11941	25087	25088	52855	52855					0.12211243991373522
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.882568359375	2	641.883136	1281.75172	0.34705	0.00022277	-0.91602	-0.00058798	-0.56897	-0.00036521	641.8824138316368	96.024	0.51697	96.101	95.922	96.439	0.077415					72	46	2	0	0	0	0.46475	2	25664	25628;25664		2.7352	0.23671	1	137620			43383	11941	25087	25088	52856;52857	52857					0.12211243991373522
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.88232421875	2	641.883136	1281.75172	0.2562	0.00016445	-0.7199	-0.00046209	-0.46371	-0.00029765	641.8825806579886	99.843	0.13507	99.882	99.801	99.936	0.038994					24	15	2	0	0	0	0.46277	1	26698	26698		2.9952	1.5133	1	96226			43384	11941	25087	25088	52858	52858					0.12211243991373522
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.883056640625	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.143	1	95.226	94.726	95.726	0.082779								0	0	0	0.36517	1	25404	25404		4.897	0	1				43385	11941	25087	25088	52859	52859					0.12211243991373522
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8816528320312	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.452	1	98.513	98.013	99.013	0.061516								0	0	0	0.38114	1	26351	26351		1.3295	0	1				43386	11941	25087	25088	52860	52860					0.12211243991373522
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8834228515625	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.513	1	98.575	98.075	99.075	0.061516								0	0	0	0.38114	1	26368	26368		1.3295	0	1				43387	11941	25087	25088	52861	52861					0.12211243991373522
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8829956054688	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.627	1	99.678	99.178	100.18	0.050888								0	0	0	0.37382	1	26644	26644		2.9952	0.26005	1				43388	11941	25087	25088	52862	52862					0.12211243991373522
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8829956054688	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.732	1	99.771	99.271	100.27	0.038994								0	0	0	0.38114	1	26669	26669		1.3295	0	1				43389	11941	25087	25088	52863	52863					0.12211243991373522
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.3834228515625	2	641.883136	1281.75172	0.30824	0.00019785	-0.90025	-0.00057786	-0.59201	-0.00038	641.88247749753	97.203	0.63464	97.274	97.175	97.809	0.070465					91	68	2	0	0	0	0.33318	1	26108	26108		1.3295	0	1	98500			43390	11941	25087	25088	52864	52864					0.12211243991373522
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.883056640625	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.805	1	98.798	98.298	99.298	-0.006897								0	0	0	0.37382	1	26474	26474		2.9952	0.26005	1				43391	11941	25087	25088	52865	52865					0.12211243991373522
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8826904296875	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.688	1	99.681	99.181	100.18	-0.006897								0	0	0	0.37382	1	26694	26694		2.9952	0.26005	1				43392	11941	25087	25088	52866	52866					0.12211243991373522
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.88232421875	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.781	1	99.774	99.274	100.27	-0.006897								0	0	0	0.37382	1	26714	26714		2.9952	1.5133	1				43393	11941	25087	25088	52867	52867					0.12211243991373522
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.88330078125	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.884	1	99.878	99.378	100.38	-0.006897								0	0	0	0.38114	1	26740	26740		1.3295	0	1				43394	11941	25087	25088	52868	52868					0.12211243991373522
SLLALPTQQRR	11	Unmodified	_SLLALPTQQRR_					0	0	0		ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	ENST00000564152.1_1_22:47158257-47158401:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.88232421875	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.934	1	99.927	99.427	100.43	-0.006897								0	0	0	0.37382	1	26754	26754		2.9952	0.26005	1				43395	11941	25087	25088	52869	52869					0.12211243991373522
SLLAPIRSK	9	Unmodified	_SLLAPIRSK_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.29736328125	2	492.813659	983.612765	-0.65132	-0.00032098	-0.46895	-0.0002311	-1.1203	-0.00055208	492.81344749942065	35.134	0.41159	35.134	34.917	35.328	0					22	14	2	0	0	0	0.24688	1	6964	6964		14.838	3.198	1	103690			43396	4809	25088	25089	52870	52870					0.12030326093884014
SLLDDLYKYF	10	Unmodified	_SLLDDLYKYF_					0	0	0		ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.2203063964844	3	426.220178	1275.63871	0.091005	3.8788E-05	0.17996	7.6703E-05	0.27096	0.00011549	426.2202941257824	26.538	1.0791	26.515	26.043	27.122	-0.022238					114	37	4	0	0	0	0.38745	1	4428	4428		5.7834	0	1	1279600			43397	1881	25089	25090	52871	52871					0.011911307548416517
SLLDPASLCP	10	Unmodified	_SLLDPASLCP_					0	0	0		ENST00000527357.5_1_11:801679-803120:-|nuORF	ENST00000527357.5_1_11:801679-803120:-|nuORF	ENST00000527357.5_1_11:801679-803120:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.302001953125	2	508.260068	1014.50558	0.29525	0.00015006	-0.33951	-0.00017256	-0.044265	-2.2498E-05	508.259862948422	49.086	0.74381	49.131	48.796	49.54	0.044891					37	26	2	0	0	0	0.31267	1	11333	11333		10.074	0	1	223300			43398	11570	25090	25091	52872	52872					-0.0010901190265713012
SLLDPASLCPW	11	Unmodified	_SLLDPASLCPW_					0	0	0		ENST00000527357.5_1_11:801679-803120:-|nuORF	ENST00000527357.5_1_11:801679-803120:-|nuORF	ENST00000527357.5_1_11:801679-803120:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.3613891601562	2	601.299724	1200.5849	0.6342	0.00038134	-3.7309	-0.0022434	-3.0967	-0.001862	601.2982695461301	58.148	0.37788	58.131	57.977	58.355	-0.017197					21	13	2	0	0	0	0.23599	1	14122	14122		41.84	13.345	1	154330			43399	11570	25091	25092	52873	52873					-0.007373649485089118
SLLDVLVGGF	10	Unmodified	_SLLDVLVGGF_					0	0	0		nc|ENSG00000214900|Q8WXQ3|LINC01599	nc|ENSG00000214900|Q8WXQ3|LINC01599	nc|ENSG00000214900|Q8WXQ3|LINC01599	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8078308105469	2	510.292225	1018.5699	0.68131	0.00034767	-0.99572	-0.00050811	-0.31442	-0.00016044	510.2918414070714	60.893	0.3311	60.893	60.577	60.908	0					17	11	2	0	0	0	0.14015	1	14901	14901		39.957	3.8303	1	450910			43400	12943	25092	25093	52874	52874					0.061355112458159056
SLLDVLVGGF	10	Unmodified	_SLLDVLVGGF_					0	0	0		nc|ENSG00000214900|Q8WXQ3|LINC01599	nc|ENSG00000214900|Q8WXQ3|LINC01599	nc|ENSG00000214900|Q8WXQ3|LINC01599	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.80792236328125	2	510.292225	1018.5699	0.59082	0.00030149	-0.55432	-0.00028286	0.036503	1.8627E-05	510.29181819678735	60.79	0.31043	60.887	60.639	60.949	0.096985					19	10	2	0	0	0	0.14015	1	14886	14886		39.957	7.1716	1	422610			43401	12943	25092	25093	52875	52875					0.061355112458159056
SLLDVLVGGF	10	Unmodified	_SLLDVLVGGF_					0	0	0		nc|ENSG00000214900|Q8WXQ3|LINC01599	nc|ENSG00000214900|Q8WXQ3|LINC01599	nc|ENSG00000214900|Q8WXQ3|LINC01599	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.80816650390625	2	510.292225	1018.5699	0.60054	0.00030645	-1.2269	-0.00062609	-0.62639	-0.00031964	510.2915471086646	60.904	0.34792	60.894	60.596	60.944	-0.0094566					20	12	2	0	0	0	0.20278	1	14903	14903		32.305	3.2239	1	635600			43402	12943	25092	25093	52876	52876					0.061355112458159056
SLLDYCEYKL	10	Unmodified	_SLLDYCEYKL_					0	0	0			REV__ENSG00000150540|ENST00000280097|HNMT	REV__ENSG00000150540|ENST00000280097|HNMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.57489013671875	3	416.205652	1245.59513	-0.40861	-0.00017006	-2.0743	-0.00086336	-2.483	-0.0010334	416.20490759912576	28.239	0.24182	28.239	28.036	28.277	0					11	7	2	0	0	0	0.3179	1	4853	4853		5.7834	0	1	89119	+		43403	16501	25093	25094	52877	52877					-0.017848020139581422
SLLEKKVI	8	Unmodified	_SLLEKKVI_					0	0	0			REV__ENSG00000133328|ENST00000255695|PLAAT2	REV__ENSG00000133328|ENST00000255695|PLAAT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.3051452636719	2	465.305136	928.595718	-0.079212	-3.6858E-05	0.34447	0.00016028	0.26526	0.00012343	465.30527167214706	55.337	0.56376	55.337	55.119	55.682	0					29	20	2	0	0	0	0.28696	1	13221	13221		32.305	0	1	317670	+		43404	15620	25094	25095	52878	52878					0.1285640548809397
SLLELFNSI	9	Unmodified	_SLLELFNSI_					0	0	0		ENSG00000140105|ENST00000392882|WARS1;ENST00000557239.5_1_14:100820898-100835522:-|nuORF;ENST00000553808.5_1_14:100820782-100835522:-|nuORF	ENSG00000140105|ENST00000392882|WARS1	ENSG00000140105|ENST00000392882|WARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.30810546875	2	518.289682	1034.56481	0.19861	0.00010294	0.99474	0.00051557	1.1934	0.0006185	518.2901119893232	53.656	0.80788	53.712	53.431	54.239	0.056255					40	30	2	0	0	0	0.11461	1	12768	12768		36.127	5.4905	1	1040200			43405	4284	25095	25096	52879	52879					0.04891207383184337
SLLETVLVF	9	Unmodified	_SLLETVLVF_					0	0	0		ENST00000590943.6_1_19:2273361-2273418:+|nuORF	ENST00000590943.6_1_19:2273361-2273418:+|nuORF	ENST00000590943.6_1_19:2273361-2273418:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.81298828125	2	510.802426	1019.5903	0.58601	0.00029933	2.0604	0.0010524	2.6464	0.0013518	510.8035740854494	50.071	0.31113	50.115	49.957	50.268	0.044888					18	11	2	0	0	0	0.17611	1	11546	11546		34.102	10.082	1	342410			43406	12177	25096	25097	52880	52880					0.08128681905623125
SLLETVLVF	9	Unmodified	_SLLETVLVF_					0	0	0		ENST00000590943.6_1_19:2273361-2273418:+|nuORF	ENST00000590943.6_1_19:2273361-2273418:+|nuORF	ENST00000590943.6_1_19:2273361-2273418:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.81402587890625	2	510.802426	1019.5903	0.60784	0.00031049	1.4688	0.00075025	2.0766	0.0010607	510.80343371244317	50.069	0.42173	50.09	49.939	50.361	0.020691					22	15	2	0	0	0	0.12846	1	11546	11546		34.102	3.4659	1	322050			43407	12177	25096	25097	52881	52881					0.08128681905623125
SLLEVRLEECR	11	Unmodified	_SLLEVRLEECR_					0	0	0			REV__ENSG00000172361|ENST00000398545|CFAP53	REV__ENSG00000172361|ENST00000398545|CFAP53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.77911376953125	3	449.574738	1345.70238	-0.9352	-0.00042044	4.2079	0.0018917	3.2727	0.0014713	449.9116609004537	34.532	0.40975	34.607	34.353	34.763	0.075306					21	14	2	0	0	0	0.33202	1	6853	6853		5.0475	0.3316	1	54389	+		43408	17707	25097	25098	52882	52882					0.043361679202917
SLLFEFLF	8	Unmodified	_SLLFEFLF_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A;ENST00000486159.5_1_3:119156911-119180963:-|nuORF;nc|ENSG00000176142|Q9NV64-2|TMEM39A;ENST00000486235.5_1_3:119165863-119180852:-|nuORF	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.302001953125	2	508.278586	1014.54262	0.25412	0.00012916	-2.1813	-0.0011087	-1.9272	-0.00097956	508.77917407849844	49.209	0.44378	49.253	49.045	49.489	0.044891					30	15	3	0	0	0	0.34046	1	11333	11333		14.582	0	1	132460			43409	6903	25098	25099	52883	52883					0.03593027705426266
SLLFSKPPPF	10	Unmodified	_SLLFSKPPPF_					0	0	0		ENST00000593726.5_1_19:41305476-41306130:+|nuORF	ENST00000593726.5_1_19:41305476-41306130:+|nuORF	ENST00000593726.5_1_19:41305476-41306130:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.8237915039062	2	566.823692	1131.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.466	1	51.466	50.966	51.966	0								0	0	0	0.18365	1	12012	12012		41.956	7.5538	1				43410	12211	25099	25100	52884	52884					0.07228077033846603
SLLFSKPPPF	10	Unmodified	_SLLFSKPPPF_					0	0	0		ENST00000593726.5_1_19:41305476-41306130:+|nuORF	ENST00000593726.5_1_19:41305476-41306130:+|nuORF	ENST00000593726.5_1_19:41305476-41306130:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.8236694335938	2	566.823692	1131.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.607	1	51.617	51.117	52.117	0.0095634								0	0	0	0.13711	1	12047	12047		47.594	3.822	1				43411	12211	25099	25100	52885	52885					0.07228077033846603
SLLFVQWVAAR	11	Unmodified	_SLLFVQWVAAR_					0	0	0			REV__ENSG00000169758|ENST00000388942|TMEM266	REV__ENSG00000169758|ENST00000388942|TMEM266	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.2274475097656	3	430.583674	1288.72919	-0.21378	-9.205E-05	-0.16915	-7.2834E-05	-0.38293	-0.00016488	430.583691974772	22.722	0.48952	22.677	22.409	22.898	-0.044867					28	16	2	0	0	0	0.33037	1	3151	3151		2.084	1.0704	1	59723	+		43412	17537	25100	25101	52886	52886					0.09637644593794903
SLLGSKRKE	9	Unmodified	_SLLGSKRKE_					0	0	0			REV__nc|ENSG00000089177|Q96L93-5|KIF16B	REV__nc|ENSG00000089177|Q96L93-5|KIF16B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3059997558594	2	509.306198	1016.59784	0.42964	0.00021882	-1.3833	-0.00070452	-0.95365	-0.0004857	509.30566038754375	82.971	1.4337	82.95	82.224	83.657	-0.020584					114	57	3	0	0	0	0.31763	1	21655	21655		6.2058	0.9089	1	913370	+		43413	14026	25101	25102	52887	52887					0.09020834225896124
SLLHAGEPN	9	Unmodified	_SLLHAGEPN_					0	0	0		ENST00000435327.2_1_3:42791351-42799837:-|nuORF;ENST00000492806.5_1_3:42788640-42799837:-|nuORF;ENSG00000244607|ENST00000310232|CCDC13	ENST00000435327.2_1_3:42791351-42799837:-|nuORF	ENST00000435327.2_1_3:42791351-42799837:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.2386474609375	2	469.240524	936.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.195	1	67.273	66.773	67.773	0.078041								0	0	0	0.18374	1	16852	16852		26.884	0	1				43414	8574	25102	25103	52888	52888					-0.004279761419979877
SLLHRHRK	8	Unmodified	_SLLHRHRK_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3034057617188	2	523.820141	1045.62573	0.054556	2.8578E-05	-2.7043	-0.0014166	-2.6498	-0.001388	523.8185770517293	13.02	0.11705	12.953	12.905	13.022	-0.067496					6	3	2	0	0	0	0.34437	1	292	292		0.69038	0	1	17105			43415	373	25103	25104	52889	52889					0.10474201996635202
SLLIVAYS	8	Unmodified	_SLLIVAYS_					0	0	0			REV__ENSG00000181939|ENST00000642128|OR4C15	REV__ENSG00000181939|ENST00000642128|OR4C15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.2546691894531	2	433.255111	864.49567	-0.029506	-1.2784E-05	-0.6291	-0.00027256	-0.65861	-0.00028535	433.25500053488474	96.17	1.2983	96.166	95.716	97.015	-0.0038147					393	125	5	0	0	0	0.42758	1	25812	25812		13.508	0	1	11469000	+		43416	18172	25104	25105	52890	52890					0.058001681542691585
SLLKERNPP	9	Unmodified	_SLLKERNPP_					0	0	0		ENSG00000170967|ENST00000302259|DDI1;nc|ENSG00000197312|Q5TDH0-2|DDI2;ENST00000486680.1_1_1:15944165-15960061:+|nuORF;ENSG00000197312|ENST00000480945|DDI2;nc|ENSG00000197312|Q5TDH0-3|DDI2	ENSG00000170967|ENST00000302259|DDI1	ENSG00000170967|ENST00000302259|DDI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7578125	2	527.306198	1052.59784	0.4586	0.00024182	-0.18209	-9.6016E-05	0.27651	0.00014581	527.3059664973762	38.661	0.34645	38.752	38.568	38.915	0.090881					16	12	2	0	0	0	0.24993	1	8128	8128		13.042	1.4022	1	115310			43417	6502	25105	25106	52891	52891					0.07364834225904815
SLLKFYLKI	9	Unmodified	_SLLKFYLKI_					0	0	0		ENST00000451174.1_3_14:45716533-45719246:-|nuORF;ENST00000310806.8_1_14:45716533-45722412:-|nuORF	ENST00000451174.1_3_14:45716533-45719246:-|nuORF	ENST00000451174.1_3_14:45716533-45719246:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.857666015625	2	562.857535	1123.70052	0.12961	7.2955E-05	0.22249	0.00012523	0.35211	0.00019819	562.857622090958	61.615	0.75139	61.615	61.363	62.115	0					65	27	3	0	0	0	0.17277	1	15139	15139		27.629	3.6082	1	925120			43418	9312	25106	25107	52892	52892					0.14361526964648874
SLLKFYLKI	9	Unmodified	_SLLKFYLKI_					0	0	0		ENST00000451174.1_3_14:45716533-45719246:-|nuORF;ENST00000310806.8_1_14:45716533-45722412:-|nuORF	ENST00000451174.1_3_14:45716533-45719246:-|nuORF	ENST00000451174.1_3_14:45716533-45719246:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	562.857535	1123.70052	-0.013821	-7.7791E-06	0.97928	0.0005512	0.96546	0.00054342	562.8577814709242	61.532	0.87369	61.629	61.354	62.228	0.096989	0.020211	9.6194E-05	NaN	27.629	62	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	985470			43419	9312	25106	25107							0.14361526964648874
SLLKHPLPAP	10	Unmodified	_SLLKHPLPAP_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2817993164062	2	536.829309	1071.64407	0.34115	0.00018314	2.7566	0.0014798	3.0977	0.0016629	536.830806883459	33.257	0.33426	33.316	33.179	33.514	0.058731					21	11	2	0	0	0	0.318	1	6405	6405		3.9444	0	1	158470	+		43420	15330	25107	25108	52893	52893					0.11110899127993434
SLLKHQRIHTG	11	Unmodified	_SLLKHQRIHTG_					0	0	0		ZFP2|p.G210Efs*18|1|0.11|ENSG00000198939|chr5:178931940-178931940|T/-|frameshift_variant;ENSG00000198939|ENST00000361362|ZFP2	ZFP2|p.G210Efs*18|1|0.11|ENSG00000198939|chr5:178931940-178931940|T/-|frameshift_variant	ZFP2|p.G210Efs*18|1|0.11|ENSG00000198939|chr5:178931940-178931940|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8880310058594	3	430.586077	1288.7364	-0.46199	-0.00019893	-1.1345	-0.00048849	-1.5965	-0.00068742	430.58554304439224	28.145	0.49335	28.145	27.84	28.333	0					36	16	3	0	0	0	0.33056	1	4875	4875		5.8681	0	1	164090			43421	8168	25108	25109	52894	52894					0.10358377194211243
SLLKNLWVS	9	Unmodified	_SLLKNLWVS_					0	0	0		nc|ENSG00000163531|O94856-6|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856|NFASC;ENST00000404977.6_1_1:204951067-204978869:+|nuORF;ENST00000512826.5_1_1:204926851-204957975:+|nuORF;nc|ENSG00000163531|O94856-10|NFASC;nc|ENSG00000163531|O94856-3|NFASC;nc|ENSG00000163531|O94856-8|NFASC;nc|ENSG00000163531|O94856-11|NFASC;nc|ENSG00000163531|O94856-7|NFASC	nc|ENSG00000163531|O94856-6|NFASC	nc|ENSG00000163531|O94856-6|NFASC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.30322265625	2	530.313492	1058.61243	0.5079	0.00026934	0.13741	7.2871E-05	0.64531	0.00034221	530.3133835997937	63.066	0.6378	63.066	62.776	63.413	0					60	23	3	0	0	0	0.28674	1	15674	15674		10.824	0.75	1	820120			43422	12797	25109	25110	52895	52895					0.08546906374044738
SLLLAPWMRS	10	Unmodified	_SLLLAPWMRS_					0	0	0			REV__ENSG00000139200|ENST00000534837|PIANP	REV__ENSG00000139200|ENST00000534837|PIANP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.3248291015625	2	587.326076	1172.6376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.521	1	59.51	59.01	60.01	-0.011486								0	0	0	0.3392	1	14492	14492		19.362	1.2156	1		+		43423	15975	25110	25111	52896	52896					0.05818637904962998
SLLLAPWMRS	10	Unmodified	_SLLLAPWMRS_					0	0	0			REV__ENSG00000139200|ENST00000534837|PIANP	REV__ENSG00000139200|ENST00000534837|PIANP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.3226318359375	2	587.326076	1172.6376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.552	1	59.541	59.041	60.041	-0.011486								0	0	0	0.3392	1	14501	14501		19.362	4.5237	1		+		43424	15975	25110	25111	52897	52897					0.05818637904962998
SLLLHVCWG	9	Unmodified	_SLLLHVCWG_					0	0	0		ENST00000238682.7_1_14:76447108-76447399:-|nuORF	ENST00000238682.7_1_14:76447108-76447399:-|nuORF	ENST00000238682.7_1_14:76447108-76447399:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.814208984375	2	514.273312	1026.53207	-0.23611	-0.00012143	-3.0079	-0.0015469	-3.244	-0.0016683	514.2719690403399	12.468	0.38876	12.4	12.313	12.702	-0.06806					17	12	2	0	0	0	0.32733	1	125	125		4.756	0.42677	1	30468			43425	8880	25111	25112	52898	52898					0.019867217793489544
SLLLKVERKW	10	Unmodified	_SLLLKVERKW_					0	0	0			REV__nc|ENSG00000101474|Q9HDC9-2|APMAP	REV__nc|ENSG00000101474|Q9HDC9-2|APMAP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.39794921875	2	636.395348	1270.77614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.678	1	92.767	92.267	93.267	0.089195								0	0	0	0.38166	1	24655	24655		1.4819	0.28856	1		+		43426	14276	25112	25113	52899	52899					0.1515850414493798
SLLLMAMFLL	10	Unmodified	_SLLLMAMFLL_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3324584960938	2	576.331981	1150.64941	0.96945	0.00055873	-0.14394	-8.2955E-05	0.82551	0.00047577	576.3318278685289	50.423	0.93044	50.468	50.16	51.09	0.044891					91	33	4	0	0	0	0.15638	1	11652	11652		37.974	0	1	2777800			43427	5202	25113	25114	52900	52900					0.08011118603940304
SLLLMAMFLL	10	Unmodified	_SLLLMAMFLL_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3323974609375	2	576.331981	1150.64941	0.89494	0.00051578	-0.017435	-1.0048E-05	0.8775	0.00050573	576.3319346911035	50.448	0.87759	50.469	50.202	51.079	0.020691					96	32	4	0	0	0	0.11922	1	11715	11715		43.858	43.858	1	2824400			43428	5202	25113	25114	52901	52901					0.08011118603940304
SLLLNVVK	8	Unmodified	_SLLLNVVK_					0	0	0			REV__ENSG00000146950|ENST00000380913|SHROOM2;REV__nc|ENSG00000158352|Q9ULL8-2|SHROOM4;REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000146950|ENST00000380913|SHROOM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.8000793457031	2	443.292028	884.569503	0.25726	0.00011404	0.045843	2.0322E-05	0.30311	0.00013436	443.29190391264615	52.37	0.39407	52.37	52.18	52.574	0					21	13	2	0	0	0	0.27344	1	12347	12347		26.884	0	1	454780	+		43429	16366;16809;15956	25114	25115	52902	52902					0.12260136316615444
SLLLWIFSCF	10	Unmodified	_SLLLWIFSCF_					0	0	0		LTR7B_dup81|chr2:34736773-34737161:+|2.883411903852937|0.2968767232142372|3.28|529.0|22|2|anti-sense	LTR7B_dup81|chr2:34736773-34737161:+|2.883411903852937|0.2968767232142372|3.28|529.0|22|2|anti-sense	LTR7B_dup81|chr2:34736773-34737161:+|2.883411903852937|0.2968767232142372|3.28|529.0|22|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5785217285156	3	410.219344	1227.6362	-0.18944	-7.7713E-05	4.4457	0.0018237	4.2562	0.001746	410.2208113560551	27.607	0.16565	27.585	27.528	27.693	-0.021412					8	5	2	0	0	0	0.32051	1	4712	4712		3.8763	0.28927	1	42711			43430	12521	25115	25116	52903	52903					0.03149003816201912
SLLMSPVP	8	Unmodified	_SLLMSPVP_					0	0	0		ENST00000523906.1_1_8:41468306-41470394:+|nuORF	ENST00000523906.1_1_8:41468306-41470394:+|nuORF	ENST00000523906.1_1_8:41468306-41470394:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2280578613281	2	422.235864	842.457176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.284	1	50.305	49.805	50.805	0.020691								0	0	0	0.34229	1	11641	11641		18.135	0	1				43431	11517	25116	25117	52904	52904					0.029645392481143062
SLLNELIQPLL	11	Unmodified	_SLLNELIQPLL_					0	0	0			REV__ENSG00000062822|ENST00000440232|POLD1	REV__ENSG00000062822|ENST00000440232|POLD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.5580749511719	3	418.255223	1251.74384	-0.064427	-2.6947E-05	0.62416	0.00026106	0.55974	0.00023411	418.2553641906494	15.407	0.42786	15.298	15.121	15.549	-0.10981					34	14	3	0	0	0	0.33287	1	1031	1031		2.8433	0.75728	1	135750	+		43432	13636	25117	25118	52905	52905					0.12803671951292017
SLLNGFLTK	9	Unmodified	_SLLNGFLTK_					0	0	0			REV__ENSG00000138160|ENST00000260731|KIF11	REV__ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7639465332031	2	496.792392	991.570232	0.36971	0.00018367	0.0063901	3.1746E-06	0.3761	0.00018684	496.7923529992793	49.126	0.57853	49.171	48.961	49.54	0.044891					30	20	2	0	0	0	0.21538	1	11296	11296		15.248	0	1	455180	+		43433	15906	25118	25119	52906	52906					0.0741093096565919
SLLNGFLTK	9	Unmodified	_SLLNGFLTK_					0	0	0			REV__ENSG00000138160|ENST00000260731|KIF11	REV__ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7637634277344	2	496.792392	991.570232	0.19768	9.8204E-05	0.21993	0.00010926	0.41761	0.00020746	496.7924433540528	49.109	0.61956	49.141	48.929	49.548	0.032043					34	21	2	0	0	0	0.21538	1	11289	11289		26.268	0	1	401830	+		43434	15906	25118	25119	52907	52907					0.0741093096565919
SLLNRTLYTI	10	Unmodified	_SLLNRTLYTI_					0	0	0		ENST00000462265.5_1_1:241761073-241761154:-|nuORF	ENST00000462265.5_1_1:241761073-241761154:-|nuORF	ENST00000462265.5_1_1:241761073-241761154:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.3464965820312	2	597.348063	1192.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.442	1	91.442	90.942	91.942	0.00046539								0	0	0	0.34897	1	24272	24272		15.248	0	1				43435	10756	25119	25120	52908	52908					0.09293945602939857
SLLPGCQSVI	10	Unmodified	_SLLPGCQSVI_					0	0	0		ENSG00000105755|ENST00000292147|ETHE1	ENSG00000105755|ENST00000292147|ETHE1	ENSG00000105755|ENST00000292147|ETHE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8106384277344	2	508.775885	1015.53722	0.4127	0.00020997	-1.6674	-0.00084834	-1.2547	-0.00063837	508.77562652192086	63.519	0.11769	63.614	63.564	63.681	0.095722					5	3	2	0	0	0	0.30555	1	15736	15736		15.248	4.4246	1	231720			43436	2022	25120	25121	52909	52909					0.03006980851307617
SLLPLRNPF	9	Unmodified	_SLLPLRNPF_					0	0	0			REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8139038085938	2	528.813659	1055.61277	0.53364	0.0002822	-0.51711	-0.00027345	0.016532	8.7422E-06	528.8143159791898	71.133	7.9201	71.133	70.301	78.221	0					639	286	6	0	0	0	0.23007	1	20002	20002		19.257	2.1441	1	155660000	+		43437	20548	25121	25122	52910	52910					0.08718326093890028
SLLPLRNPF	9	Unmodified	_SLLPLRNPF_					0	0	0			REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140258789062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.358	1	78.358	77.858	78.858	0								0	0	0	0.21009	1	20270	20270		19.257	1.1106	1		+		43438	20548	25121	25122	52911	52911					0.08718326093890028
SLLPLRNPF	9	Unmodified	_SLLPLRNPF_					0	0	0			REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2711181640625	2	528.813659	1055.61277	0.65236	0.00034498	-0.49896	-0.00026386	0.1534	8.1118E-05	528.8135797891722	88.148	1.3463	88.148	87.558	88.904	0					106	66	2	0	0	0	0.25431	1	23168	23168		9.3831	1.2276	1	174110	+		43439	20548	25121	25122	52912	52912					0.08718326093890028
SLLPLRNPF	9	Unmodified	_SLLPLRNPF_					0	0	0			REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7757568359375	2	528.813659	1055.61277	0.67083	0.00035475	-0.65161	-0.00034458	0.019223	1.0165E-05	528.8133100508985	87.185	0.76791	87.185	86.938	87.706	0					59	33	2	0	0	0	0.24848	1	23111	23111		13.906	2.2658	1	150350	+		43440	20548	25121	25122	52913	52913					0.08718326093890028
SLLPLRNPF	9	Unmodified	_SLLPLRNPF_					0	0	0			REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2742309570312	2	528.813659	1055.61277	0.50759	0.00026842	-0.06577	-3.478E-05	0.44182	0.00023364	528.8135007053218	68.91	0.93745	68.982	68.677	69.615	0.071938					55	33	3	0	0	0	0.2322	1	17393	17393		20.454	11.708	1	265410	+		43441	20548	25121	25122	52914	52914					0.08718326093890028
SLLPLRNPF	9	Unmodified	_SLLPLRNPF_					0	0	0			REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8137817382812	2	528.813659	1055.61277	0.587	0.00031042	-0.51796	-0.0002739	0.069046	3.6513E-05	528.8143073961136	71.198	11.108	71.174	70.185	81.293	-0.024864					870	413	6	0	0	0	0.18803	2	19998	19882;19998		25.399	2.1441	1	170250000	+		43442	20548	25121	25122	52915;52916	52916					0.08718326093890028
SLLPLRNPF	9	Unmodified	_SLLPLRNPF_					0	0	0			REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	REV__nc|ENSG00000290746|Q8WTZ4|CA5BP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2742309570312	2	528.813659	1055.61277	0.48442	0.00025617	0.13455	7.1154E-05	0.61897	0.00032732	528.8135310924623	69.008	0.64388	68.989	68.652	69.296	-0.019157					44	22	3	0	0	0	0.2322	1	17402	17402		20.454	13.164	1	193950	+		43443	20548	25121	25122	52917	52917					0.08718326093890028
SLLPPPPGGKT	11	Unmodified	_SLLPPPPGGKT_					0	0	0		nc|ENSG00000157191|Q9NVZ3-4|NECAP2;ENSG00000157191|ENST00000337132|NECAP2;nc|ENSG00000157191|Q9NVZ3-2|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.32958984375	2	532.310949	1062.60735	0.43848	0.00023341	-0.69401	-0.00036943	-0.25553	-0.00013602	532.3108548832724	40.638	0.45866	40.737	40.532	40.99	0.099407					28	16	2	0	0	0	0.32017	1	8748	8748		20.415	4.5674	1	268360			43444	5287	25122	25123	52918	52918					0.0785460251142922
SLLQPPTL	8	Unmodified	_SLLQPPTL_					0	0	0		nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	nc|ENSG00000160584|Q9Y2K2-7|SIK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2524719238281	2	434.760561	867.506569	0.025729	1.1186E-05	-0.47396	-0.00020606	-0.44823	-0.00019487	434.760460592595	71.236	0.5964	71.211	70.943	71.54	-0.024864					42	21	3	0	0	0	0.20518	1	18140	18140		42.095	0	1	1265800			43445	5471	25123	25124	52919	52919					0.06751570528570028
SLLSEFCEV	9	Unmodified	_SLLSEFCEV_					0	0	0			REV__nc|ENSG00000005810|O75592-2|MYCBP2	REV__nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2947387695312	2	513.74425	1025.47395	0.22035	0.0001132	-2.2887	-0.0011758	-2.0683	-0.0010626	513.7439622512634	76.357	0.33853	76.357	76.22	76.559	0					21	11	3	0	0	0	0.2322	1	19677	19677		20.454	5.8719	1	128190	+		43446	13346	25124	25125	52920	52920					-0.03777004656603822
SLLSLCSSQKF	11	Unmodified	_SLLSLCSSQKF_					0	0	0			REV__ENST00000568130.2_1_16:50098612-50100031:-|nuORF	REV__ENST00000568130.2_1_16:50098612-50100031:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.8817138671875	3	404.88128	1211.62201	-0.21033	-8.5158E-05	0.96123	0.00038918	0.7509	0.00030402	404.8814989657172	23.021	1.0983	22.976	22.069	23.167	-0.044867					55	38	2	0	0	0	0.25499	1	3328	3328		20.871	12.427	1	144210	+		43447	22389	25125	25126	52921	52921					0.024663065972617915
SLLSLCSSQKF	11	Unmodified	_SLLSLCSSQKF_					0	0	0			REV__ENST00000568130.2_1_16:50098612-50100031:-|nuORF	REV__ENST00000568130.2_1_16:50098612-50100031:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	404.88128	1211.62201	-0.31883	-0.00012909	1.2649	0.00051215	0.94611	0.00038306	404.88175820206294	22.789	0.54683	22.789	22.563	23.11	0	-0.070954	5.14E-05	NaN	20.871	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105020	+		43448	22389	25125	25126							0.024663065972617915
SLLSLEQEPLL	11	Unmodified	_SLLSLEQEPLL_					0	0	0		ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	ENSG00000101412|ENST00000343380|E2F1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.5709533691406	3	414.571099	1240.69147	0.55228	0.00022896	-0.21681	-8.9883E-05	0.33547	0.00013908	414.57089365806695	33.408	0.99519	33.475	33.154	34.149	0.06636					90	35	4	0	0	0	0.33085	1	6504	6504		5.5233	5.5233	1	1238000			43449	1696	25126	25127	52922	52922					0.08075088817690812
SLLSPLLTV	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SLLSPLLTV_					1	0	0			REV__ENST00000492880.1_1_3:149213287-149213530:+|nuORF	REV__ENST00000492880.1_1_3:149213287-149213530:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8018493652344	2	492.802426	983.590298	0.42899	0.0002114	-0.58847	-0.00029	-0.15948	-7.8595E-05	492.80201042442883	82.538	1.2427	82.611	82.215	83.458	0.073097					117	48	4	0	0	0	0.07432	1	21644	21644		43.858	7.7313	1	1882100	+		43450	21630	25127	25128	52923	52923					0.09784681905625803
SLLSVLLPK	9	Unmodified	_SLLSVLLPK_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.320786	968.627018	0.33455	0.00016237	-0.18362	-8.9115E-05	0.15093	7.325E-05	485.3207147113938	72.936	0.68453	72.936	72.506	73.191	0					39	24	2	0	0	0	0.18936	1	18656	18656		32.786	0	1	98399			43451	3101	25128	25129	52924	52924					0.14144978522188012
SLLSVLLPK	9	Unmodified	_SLLSVLLPK_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	485.320786	968.627018	0.25865	0.00012553	-0.32852	-0.00015944	-0.069877	-3.3913E-05	485.32064772854	72.807	0.71588	72.861	72.484	73.2	0.053833	-0.037157	-5.6868E-05	NaN	38.176	41	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133360			43452	3101	25128	25129							0.14144978522188012
SLLTLDIKVWL	11	Unmodified	_SLLTLDIKVWL_					0	0	0			REV__ENSG00000144218|ENST00000672756|AFF3	REV__ENSG00000144218|ENST00000672756|AFF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.93280029296875	3	434.267351	1299.78022	0.12045	5.231E-05	-0.62649	-0.00027207	-0.50604	-0.00021976	434.26704634691794	85.741	1.6783	85.732	84.66	86.339	-0.0090103					113	64	3	0	0	0	0.33334	1	22527	22527		1.2148	1.2148	1	411070	+		43453	16222	25129	25130	52925	52925					0.14232548847985527
SLLTLFTLS	9	Unmodified	_SLLTLFTLS_					0	0	0		ENST00000377921.7_1_10:16634938-16635046:-|nuORF	ENST00000377921.7_1_10:16634938-16635046:-|nuORF	ENST00000377921.7_1_10:16634938-16635046:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.79620361328125	2	497.794601	993.574648	0.4954	0.00024661	1.8494	0.00092061	2.3448	0.0011672	497.7948971957941	43.233	1.3294	43.31	42.772	44.102	0.077515					129	48	5	0	0	0	0.25989	1	9506	9506		14.838	1.3304	1	903140			43454	9947	25130	25131	52926	52926					0.07760395388584129
SLLTLIDVF	9	Unmodified	_SLLTLIDVF_					0	0	0			REV__nc|ENSG00000135083|Q8IV13-2|CCNJL	REV__nc|ENSG00000135083|Q8IV13-2|CCNJL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.81353759765625	2	510.802426	1019.5903	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.105	1	50.105	49.605	50.605	0								0	0	0	0.20238	1	11595	11595		21.747	0	1		+		43455	15719	25131	25132	52927	52927					0.08128681905623125
SLLTPILGIQK	11	Unmodified	_SLLTPILGIQK_					0	0	0		ENST00000477322.1_1_1:92798926-92846428:+|nuORF;ENSG00000122484|ENST00000610020|RPAP2	ENST00000477322.1_1_1:92798926-92846428:+|nuORF	ENST00000477322.1_1_1:92798926-92846428:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.87646484375	2	591.876456	1181.73836	0.37879	0.0002242	-0.0807	-4.7765E-05	0.29809	0.00017643	591.8763177976174	67.08	0.67972	67.08	66.856	67.536	0					58	23	3	0	0	0	1.5882E-08	3	16839	16793;16839;16885		135.86	110.87	1	905100			43456	3045	25132	25133	52928;52929;52930	52929					0.15475993159452628
SLLTPILGIQK	11	Unmodified	_SLLTPILGIQK_					0	0	0		ENST00000477322.1_1_1:92798926-92846428:+|nuORF;ENSG00000122484|ENST00000610020|RPAP2	ENST00000477322.1_1_1:92798926-92846428:+|nuORF	ENST00000477322.1_1_1:92798926-92846428:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.87646484375	2	591.876456	1181.73836	0.35717	0.0002114	-0.07861	-4.6527E-05	0.27856	0.00016487	591.8763081010567	66.988	0.69829	67.072	66.795	67.493	0.083832					58	24	3	0	0	0	1.3139E-05	3	16813	16768;16813;16862		121.35	90.078	1	895980			43457	3045	25132	25133	52931;52932;52933	52932					0.15475993159452628
SLLTPILGIQK	11	Unmodified	_SLLTPILGIQK_					0	0	0		ENST00000477322.1_1_1:92798926-92846428:+|nuORF;ENSG00000122484|ENST00000610020|RPAP2	ENST00000477322.1_1_1:92798926-92846428:+|nuORF	ENST00000477322.1_1_1:92798926-92846428:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.876708984375	2	591.876456	1181.73836	0.19887	0.00011771	0.11417	6.7576E-05	0.31304	0.00018528	591.8763855179864	67.122	0.66405	67.106	66.814	67.478	-0.016296					59	22	4	0	0	0	0.00072509	2	16806	16806;16859		100.71	69.44	1	771300			43458	3045	25132	25133	52934;52935	52934					0.15475993159452628
SLLTVHQRIH	10	Unmodified	_SLLTVHQRIH_					0	0	0		nc|ENSG00000197608|Q6ZN19|ZNF841;ENSG00000197608|ENST00000594440|ZNF841	nc|ENSG00000197608|Q6ZN19|ZNF841	nc|ENSG00000197608|Q6ZN19|ZNF841	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.35107421875	2	602.351471	1202.68839	0.41551	0.00025029	-0.75579	-0.00045525	-0.34028	-0.00020497	602.3510065421796	26.88	0.39175	26.88	26.729	27.121	0					26	13	3	0	0	0	0.26265	1	4494	4494		24.991	7.5483	1	139580			43459	7984	25133	25134	52936	52936					0.09515303274179132
SLLTVHQRIH	10	Unmodified	_SLLTVHQRIH_					0	0	0		nc|ENSG00000197608|Q6ZN19|ZNF841;ENSG00000197608|ENST00000594440|ZNF841	nc|ENSG00000197608|Q6ZN19|ZNF841	nc|ENSG00000197608|Q6ZN19|ZNF841	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.35107421875	2	602.351471	1202.68839	0.45734	0.00027548	-0.96008	-0.00057831	-0.50274	-0.00030282	602.3507172154914	26.86	0.45068	26.838	26.65	27.1	-0.021412					29	15	3	0	0	0	0.15473	1	4504	4504		38.176	9.6811	1	134970			43460	7984	25133	25134	52937	52937					0.09515303274179132
SLLTVHQRIH	10	Unmodified	_SLLTVHQRIH_					0	0	0		nc|ENSG00000197608|Q6ZN19|ZNF841;ENSG00000197608|ENST00000594440|ZNF841	nc|ENSG00000197608|Q6ZN19|ZNF841	nc|ENSG00000197608|Q6ZN19|ZNF841	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3511352539062	2	602.351471	1202.68839	0.4638	0.00027937	-1.0191	-0.00061384	-0.55527	-0.00033447	602.3509104398644	26.865	0.44501	26.854	26.625	27.07	-0.01156					32	15	3	0	0	0	0.35637	1	4505	4505		11.495	3.3392	1	142850			43461	7984	25133	25134	52938	52938					0.09515303274179132
SLLTVTSTSRL	11	Unmodified	_SLLTVTSTSRL_					0	0	0			REV__nc|ENSG00000263155|P0CAP1-8|MYZAP	REV__nc|ENSG00000263155|P0CAP1-8|MYZAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3432006835938	2	589.342978	1176.6714	0.62675	0.00036937	-0.013766	-8.113E-06	0.61298	0.00036125	589.3429934702074	84.189	3.0513	84.189	83.2	86.251	0					514	117	5	0	0	0	0.42762	2	22335	22335;22383		7.609	7.609	1	20500000	+		43462	19293	25134	25135	52939;52940	52939					0.09013337877695449
SLLTVTSTSRL	11	Unmodified	_SLLTVTSTSRL_					0	0	0			REV__nc|ENSG00000263155|P0CAP1-8|MYZAP	REV__nc|ENSG00000263155|P0CAP1-8|MYZAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3432006835938	2	589.342978	1176.6714	0.58198	0.00034299	0.056657	3.3391E-05	0.63864	0.00037638	589.3430170898658	84.22	2.9569	84.203	83.246	86.203	-0.016823					532	120	5	0	0	0	0.42762	1	22329	22329		7.609	7.609	1	23043000	+		43463	19293	25134	25135	52941	52941					0.09013337877695449
SLLTVTSTSRL	11	Unmodified	_SLLTVTSTSRL_					0	0	0			REV__nc|ENSG00000263155|P0CAP1-8|MYZAP	REV__nc|ENSG00000263155|P0CAP1-8|MYZAP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	589.342978	1176.6714	0.5512	0.00032485	0.029127	1.7166E-05	0.58033	0.00034201	589.3430399505316	83.907	3.6129	83.984	83.082	86.695	0.077095	-0.14114	4.2505E-06	NaN	7.609	593	141	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21740000	+		43464	19293	25134	25135							0.09013337877695449
SLLVGPLVNK	10	Unmodified	_SLLVGPLVNK_					0	0	0		nc|ENSG00000142583|P22732-2|SLC2A5;ENSG00000142583|ENST00000377424|SLC2A5	nc|ENSG00000142583|P22732-2|SLC2A5	nc|ENSG00000142583|P22732-2|SLC2A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.8425903320312	2	520.329142	1038.64373	0.53623	0.00027902	-0.089278	-4.6454E-05	0.44695	0.00023256	520.3291613299466	53.335	0.39569	53.335	53.173	53.568	0					28	14	3	0	0	0	0.25117	1	12592	12592		29.841	8.3036	1	592930			43465	4453	25135	25136	52942	52942					0.12595479408128085
SLLVGPLVNK	10	Unmodified	_SLLVGPLVNK_					0	0	0		nc|ENSG00000142583|P22732-2|SLC2A5;ENSG00000142583|ENST00000377424|SLC2A5	nc|ENSG00000142583|P22732-2|SLC2A5	nc|ENSG00000142583|P22732-2|SLC2A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.8424072265625	2	520.329142	1038.64373	0.44768	0.00023294	0.22718	0.00011821	0.67486	0.00035115	520.3293438101354	53.346	0.44531	53.403	53.193	53.638	0.056259					32	16	3	0	0	0	0.25117	1	12579	12579		36.506	8.8774	1	625410			43466	4453	25135	25136	52943	52943					0.12595479408128085
SLLVHKLIF	9	Unmodified	_SLLVHKLIF_					0	0	0		ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	ENSG00000137812|ENST00000399668|KNL1	ENSG00000137812|ENST00000399668|KNL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.3445434570312	2	535.342052	1068.66955	0.30315	0.00016229	2.902	0.0015536	3.2052	0.0017159	535.3441989717396	38.358	0.95037	38.358	37.98	38.931	0					75	33	4	0	0	0	0.32733	1	7999	7999		4.756	0	1	454280			43467	4078	25136	25137	52944	52944					0.13796373650416172
SLLVLWTSPA	10	Unmodified	_SLLVLWTSPA_					0	0	0		ENSG00000172724|ENST00000311925|CCL19	ENSG00000172724|ENST00000311925|CCL19	ENSG00000172724|ENST00000311925|CCL19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.314208984375	2	543.813325	1085.6121	0.30186	0.00016416	-1.9786	-0.001076	-1.6767	-0.00091182	544.3139788718529	12.287	0.68453	12.19	11.929	12.614	-0.096607					32	25	2	0	0	0	0.36002	1	77	77		10.824	1.4408	1	253420			43468	6656	25137	25138	52945	52945					0.07271486654190085
SLLWLLERRL	10	Unmodified	_SLLWLLERRL_					0	0	0		ENSG00000118655|ENST00000650450|DCLRE1B;ENST00000466480.1_1_1:114448336-114454776:+|nuORF	ENSG00000118655|ENST00000650450|DCLRE1B	ENSG00000118655|ENST00000650450|DCLRE1B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8988037109375	2	649.900797	1297.78704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.006	1	93.006	92.506	93.506	0.00046539								0	0	0	0.38104	1	24754	24754		3.5965	0	1				43469	2837	25138	25139	52946	52946					0.15005906519218115
SLLWLLLPGL	10	Unmodified	_SLLWLLLPGL_					0	0	0			REV__ENSG00000281991|ENST00000615541|TMEM265	REV__ENSG00000281991|ENST00000615541|TMEM265	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.7985229492188	2	562.857535	1123.70052	-0.069689	-3.9225E-05	1.0692	0.00060183	0.99956	0.00056261	562.8578558893647	61.592	0.716	61.583	61.351	62.067	-0.0089798					53	25	3	0	0	0	0.31482	1	15257	15257		11.64	0.81637	1	889690	+		43470	19361	25139	25140	52947	52947					0.14361526964671611
SLLWSMPIIQS	11	Unmodified	_SLLWSMPIIQS_					0	0	0			REV__ENST00000493847.1_1_9:115968689-115969541:-|nuORF	REV__ENST00000493847.1_1_9:115968689-115969541:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.5747985839844	3	425.565291	1273.67404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.486	1	43.486	42.986	43.986	0								0	0	0	0.3255	1	9557	9557		7.846	3.4399	1		+		43471	21644	25140	25141	52948	52948					0.04815470011021716
SLLYGSIPK	9	Unmodified	_SLLYGSIPK_					0	0	0		ENST00000470922.5_1_22:19165453-19166237:-|nuORF;ENSG00000100075|ENST00000215882|SLC25A1	ENST00000470922.5_1_22:19165453-19166237:-|nuORF	ENST00000470922.5_1_22:19165453-19166237:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.8133544921875	2	489.286943	976.559333	0.54676	0.00026752	0.41697	0.00020402	0.96373	0.00047154	489.2870383316449	47.972	0.54697	48.015	47.797	48.344	0.04332					38	20	3	0	0	0	0.051692	1	10944	10944		63.961	24.011	1	989960			43472	1527	25141	25142	52949	52949					0.0701152859138574
SLLYHVWL	8	Unmodified	_SLLYHVWL_					0	0	0		nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1;nc|ENSG00000058804|Q9BTX1-3|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	nc|ENSG00000058804|Q9BTX1-4|NDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2879638671875	2	515.789653	1029.56475	0.49132	0.00025342	-0.66882	-0.00034497	-0.17749	-9.1549E-05	515.7894005349117	36.967	0.53593	37.06	36.74	37.275	0.093014					32	19	2	0	0	0	0.34319	1	7566	7566		5.7604	5.7604	1	319490			43473	738	25142	25143	52950	52950					0.051152521738458745
SLMEDKLRLVE	11	Unmodified	_SLMEDKLRLVE_					0	0	0			REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	444.25091552734375	3	444.911239	1331.71189	0.17933	7.9786E-05	2.3506	0.0010458	2.53	0.0011256	444.91255037110574	30.958	0.53392	30.985	30.733	31.267	0.027157					37	19	3	0	0	0	0.32824	1	5806	5806		12.856	3.8797	1	194630	+		43474	16081	25143	25144	52951	52951					0.05929936205802733
SLMEDKLRLVE	11	Unmodified	_SLMEDKLRLVE_					0	0	0			REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	444.911239	1331.71189	0.18903	8.41E-05	2.5124	0.0011178	2.7014	0.0012019	444.9126708491958	30.986	0.5563	30.986	30.701	31.258	0	-0.014652	3.5532E-05	NaN	12.856	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225300	+		43475	16081	25143	25144							0.05929936205802733
SLMEDKLRLVE	11	Unmodified	_SLMEDKLRLVE_					0	0	0			REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	444.911239	1331.71189	-0.015282	-6.7991E-06	2.5966	0.0011553	2.5813	0.0011485	444.91295335178455	31.003	0.55858	31.031	30.749	31.308	0.027946	0.030124	0.0001479	NaN	12.856	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176840	+		43476	16081	25143	25144							0.05929936205802733
SLMERLHVME	10	Unmodified	_SLMERLHVME_					0	0	0		ENST00000530645.1_1_11:111866135-111866902:+|nuORF;ENST00000526500.5_1_11:111859671-111889757:+|nuORF;nc|ENSG00000150764|Q155Q3-2|DIXDC1;ENSG00000150764|ENST00000440460|DIXDC1	ENST00000530645.1_1_11:111866135-111866902:+|nuORF	ENST00000530645.1_1_11:111866135-111866902:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.55810546875	3	415.542381	1243.60531	-0.32049	-0.00013318	-0.22941	-9.533E-05	-0.54991	-0.00022851	415.54258308644023	15.078	1.2194	15.078	14.789	16.008	0					140	42	7	0	0	0	0.39935	1	958	958		1.7423	0	1	1894400			43477	11618	25144	25145	52952	52952					-0.00674517560332788
SLMETMKQPF	10	Unmodified	_SLMETMKQPF_					0	0	0		nc|ENSG00000248333|P21127|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000008128|Q9UQ88-9|CDK11A;nc|ENSG00000008128|Q9UQ88-5|CDK11A;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;ENST00000492390.5_1_1:1635923-1636277:-|nuORF;ENST00000598846.1_1_1:1635046-1639660:-|nuORF;ENST00000468800.5_1_1:1635923-1638967:-|nuORF	nc|ENSG00000248333|P21127|CDK11B	nc|ENSG00000248333|P21127|CDK11B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.56671142578125	3	404.531482	1210.57262	0.022972	9.2929E-06	-1.775	-0.00071804	-1.752	-0.00070874	404.53065166524533	30.071	0.42444	30.071	29.801	30.225	0					19	14	2	0	0	0	0.3198	1	5393	5393		2.086	0	1	60038			43478	388	25145	25146	52953	52953					-0.02424724683214663
SLMFDRQI	8	Oxidation (M)	_SLM(Oxidation (M))FDRQI_		SLM(1)FDRQI		SLM(48)FDRQI	0	0	1			REV__ENST00000469154.5_1_7:150936191-150937662:-|nuORF	REV__ENST00000469154.5_1_7:150936191-150937662:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.257568359375	2	513.257859	1024.50117	0.0056907	2.9208E-06	0.5568	0.00028578	0.56249	0.0002887	513.2582655312193	39.608	1.1227	39.608	39.104	40.226	0					85	37	3	0	0	0	0.16948	1	8361	8361		48.346	6.2513	1	431020	+		43479	13913	25146	25147	52954	52954		990			-0.010104763255640137
SLMHSCGM	8	Unmodified	_SLMHSCGM_					0	0	0		nc|ENSG00000115419|O94925-3|GLS;ENSG00000115419|ENST00000320717|GLS;ENST00000461965.5_1_2:191775005-191792247:+|nuORF;ENST00000496006.5_1_12:56868201-56871452:-|nuORF;ENST00000486433.5_1_12:56865273-56869736:-|nuORF;ENSG00000135423|ENST00000311966|GLS2	nc|ENSG00000115419|O94925-3|GLS;ENSG00000135423|ENST00000311966|GLS2	nc|ENSG00000115419|O94925-3|GLS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.5538330078125	2	433.171884	864.329215	-0.16907	-7.3239E-05	0.022302	9.6608E-06	-0.14677	-6.3578E-05	433.1718719437566	27.062	2.9471	27.05	25.228	28.176	-0.01156					173	104	2	0	0	0	0.34337	1	4649	4649		5.2307	0	1	174180			43480	2644;3872	25147	25148	52955	52955					-0.10837667609075652
SLMHSFILK	9	Oxidation (M)	_SLM(Oxidation (M))HSFILK_		SLM(1)HSFILK		SLM(150)HSFILK	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2996826171875	2	546.299527	1090.5845	0.82964	0.00045323	-0.45254	-0.00024722	0.3771	0.00020601	546.2996076265982	37.393	1.9717	37.393	36.959	38.931	0					213	70	6	0	0	0	7.3453E-05	2	7677	7627;7677		145.13	74.373	1	11389000			43481	3250	25148	25149	52956;52957	52957		415			0.042832601222926314
SLMHSFILK	9	Oxidation (M)	_SLM(Oxidation (M))HSFILK_		SLM(1)HSFILK		SLM(83)HSFILK	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.8222045898438	2	546.299527	1090.5845	0.14234	7.7761E-05	0.27601	0.00015078	0.41835	0.00022854	546.2995953372111	39.677	0.9199	39.677	39.242	40.161	0					53	33	2	0	0	0	0.026033	1	8417	8417		82.529	30.261	1	303920			43482	3250	25148	25149	52958	52958		415			0.042832601222926314
SLMHSFILK	9	Oxidation (M)	_SLM(Oxidation (M))HSFILK_		SLM(1)HSFILK		SLM(160)HSFILK	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.299560546875	2	546.299527	1090.5845	0.63081	0.00034461	-0.21621	-0.00011812	0.4146	0.00022649	546.2997040701578	37.319	1.7189	37.406	36.95	38.669	0.08741					202	62	5	0	0	0	5.7257E-07	2	7638	7589;7638		157.8	82.866	1	10912000			43483	3250	25148	25149	52959;52960	52960		415			0.042832601222926314
SLMHSFILK	9	Oxidation (M)	_SLM(Oxidation (M))HSFILK_		SLM(1)HSFILK		SLM(150)HSFILK	0	0	1		ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ENSG00000125971|ENST00000357156|DYNLRB1	ENSG00000125971|ENST00000357156|DYNLRB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.2996826171875	2	546.299527	1090.5845	0.67108	0.00036661	-0.12912	-7.0537E-05	0.54197	0.00029608	546.2998280060182	37.276	1.8044	37.369	36.924	38.729	0.093018					207	65	5	0	0	0	7.3453E-05	2	7627	7578;7627		145.13	77.049	1	10895000			43484	3250	25148	25149	52961;52962	52962		415			0.042832601222926314
SLMSALAAR	9	Oxidation (M)	_SLM(Oxidation (M))SALAAR_		SLM(1)SALAAR		SLM(56)SALAAR	0	0	1		ENSG00000065911|ENST00000394053|MTHFD2;ENST00000477455.5_1_2:74425768-74433128:+|nuORF;ENST00000488086.1_1_2:74425768-74433063:+|nuORF	ENSG00000065911|ENST00000394053|MTHFD2	ENSG00000065911|ENST00000394053|MTHFD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.23681640625	2	468.252577	934.490601	0.29092	0.00013622	1.1906	0.00055752	1.4816	0.00069375	468.25330627689425	34.063	0.77175	34.063	33.7	34.472	0					37	27	2	0	0	0	0.041175	1	6698	6698		56.177	29.293	1	175300			43485	828	25149	25150	52963	52963		105			0.020735410200245497
SLMVYIAEIYF	11	Unmodified	_SLMVYIAEIYF_					0	0	0		NCAPG2|p.W495Gfs*25|1|0.14|ENSG00000146918|chr7:158664747-158664747|A/-|frameshift_variant;NCAPG2|p.Q736Tfs*12|1|0.06|ENSG00000146918|chr7:158656560-158656561|-/AGAGTTGAGT|frameshift_variant;ENST00000467785.5_1_7:158448006-158486027:-|nuORF;ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2	NCAPG2|p.W495Gfs*25|1|0.14|ENSG00000146918|chr7:158664747-158664747|A/-|frameshift_variant	NCAPG2|p.W495Gfs*25|1|0.14|ENSG00000146918|chr7:158664747-158664747|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.26336669921875	3	450.23343	1347.67846	0.10604	4.7741E-05	-0.99233	-0.00044678	-0.88629	-0.00039904	450.23180343180576	22.944	0.18616	22.899	22.817	23.004	-0.044867					9	6	2	0	0	0	0.3322	1	3326	3326		4.7159	0	1	31616			43486	4738	25150	25151	52964	52964					0.018529344339185627
SLNAIYRY	8	Unmodified	_SLNAIYRY_					0	0	0		ENSG00000066926|ENST00000262093|FECH;nc|ENSG00000066926|P22830-2|FECH	ENSG00000066926|ENST00000262093|FECH	ENSG00000066926|ENST00000262093|FECH	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.28302001953125	2	500.266542	998.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.452	1	25.452	24.952	25.952	0								0	0	0	0.26621	1	4056	4056		34.102	10.954	1				43487	850	25151	25152	52965	52965					0.019211872717505685
SLNAQLVQL	9	Unmodified	_SLNAQLVQL_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.2876281738281	2	493.287474	984.560395	0.27353	0.00013493	0.016513	8.1457E-06	0.29004	0.00014307	493.2874239612724	67.681	0.54746	67.665	67.393	67.941	-0.016296					50	18	3	0	0	0	0.010453	2	16963	16963;17012		78.728	0	1	720240	+		43488	16423	25152	25153	52966;52967	52966					0.06749742960278127
SLNFRLVL	8	Unmodified	_SLNFRLVL_					0	0	0			REV__TMEM131|p.S883L|1|0.18|ENSG00000075568|chr2:97802431-97802431|G/A|missense_variant	REV__TMEM131|p.S883L|1|0.18|ENSG00000075568|chr2:97802431-97802431|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2612609863281	2	481.295102	960.575651	0.28203	0.00013574	-0.094973	-4.571E-05	0.18705	9.0027E-05	481.29493881793803	49.561	0.97477	49.606	49.368	50.343	0.044891					85	36	3	0	0	0	0.3408	1	11365	11365		10.074	0	1	932200	+		43489	23339	25153	25154	52968	52968					0.09378654548117993
SLNFRLVL	8	Unmodified	_SLNFRLVL_					0	0	0			REV__TMEM131|p.S883L|1|0.18|ENSG00000075568|chr2:97802431-97802431|G/A|missense_variant	REV__TMEM131|p.S883L|1|0.18|ENSG00000075568|chr2:97802431-97802431|G/A|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	481.295102	960.575651	0.27486	0.00013229	-0.095424	-4.5927E-05	0.17944	8.6364E-05	481.2949488961883	49.604	0.9902	49.627	49.347	50.338	0.023289	0.027287	-3.3016E-05	NaN	10.074	89	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	861570	+		43490	23339	25153	25154							0.09378654548117993
SLNHEIEKL	9	Unmodified	_SLNHEIEKL_					0	0	0			REV__ENSG00000113522|ENST00000378823|RAD50	REV__ENSG00000113522|ENST00000378823|RAD50	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7813720703125	2	541.795663	1081.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.951	1	43.042	42.542	43.542	0.091362								0	0	0	0.21009	1	9382	9382		19.257	3.1079	1		+		43491	14811	25154	25155	52969	52969					0.03924824126374915
SLNLRYWRL	9	Unmodified	_SLNLRYWRL_					0	0	0			REV__ENST00000507059.5_1_5:180043993-180056331:-|nuORF	REV__ENST00000507059.5_1_5:180043993-180056331:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5530090332031	3	407.568135	1219.68258	0.071294	2.9057E-05	-2.6179	-0.001067	-2.5466	-0.0010379	407.56742670036306	17.09	0.76808	17.03	16.676	17.444	-0.060429					58	27	4	0	0	0	0.25992	1	1444	1444		4.5289	0.65253	1	80423	+		43492	13510	25155	25156	52970	52970					0.08152204762518522
SLNLSLSKD	9	Unmodified	_SLNLSLSKD_					0	0	0		CNTRL|p.S1224Rfs*3|1|0.15|ENSG00000119397|chr9:121150190-121150197|AGTCAGGA/-|frameshift_variant;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;CNTRL|p.K308Sfs*16|1|0.11|ENSG00000119397|chr9:121107915-121107916|-/GTTT|frameshift_variant	CNTRL|p.S1224Rfs*3|1|0.15|ENSG00000119397|chr9:121150190-121150197|AGTCAGGA/-|frameshift_variant	CNTRL|p.S1224Rfs*3|1|0.15|ENSG00000119397|chr9:121150190-121150197|AGTCAGGA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.78741455078125	2	488.769114	975.523675	0.20233	9.8893E-05	2.3635	0.0011552	2.5659	0.0012541	488.77046800388393	26.647	0.45768	26.647	26.44	26.897	0					27	15	2	0	0	0	0.17277	1	4440	4440		27.629	0	1	198630			43493	192	25156	25157	52971	52971					0.03493446343713913
SLNLSLSKD	9	Unmodified	_SLNLSLSKD_					0	0	0		CNTRL|p.S1224Rfs*3|1|0.15|ENSG00000119397|chr9:121150190-121150197|AGTCAGGA/-|frameshift_variant;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;CNTRL|p.K308Sfs*16|1|0.11|ENSG00000119397|chr9:121107915-121107916|-/GTTT|frameshift_variant	CNTRL|p.S1224Rfs*3|1|0.15|ENSG00000119397|chr9:121150190-121150197|AGTCAGGA/-|frameshift_variant	CNTRL|p.S1224Rfs*3|1|0.15|ENSG00000119397|chr9:121150190-121150197|AGTCAGGA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.787353515625	2	488.769114	975.523675	0.46852	0.000229	-0.81031	-0.00039606	-0.34179	-0.00016706	488.76980301788774	26.566	0.78888	26.544	26.158	26.947	-0.022238					56	27	3	0	0	0	0.12642	1	4427	4427		34.402	0	1	202170			43494	192	25156	25157	52972	52972					0.03493446343713913
SLNMRKQEERF	11	Unmodified	_SLNMRKQEERF_					0	0	0			REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B	REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.30340576171875	3	479.913754	1436.71943	-0.11041	-5.2987E-05	-0.41594	-0.00019962	-0.52635	-0.0002526	479.91362573961504	13.463	0.41952	13.364	13.189	13.608	-0.099291					23	14	3	0	0	0	0.33346	1	400	400		0.50596	0	1	51800	+		43495	18594	25157	25158	52973	52973					0.018540885260790674
SLNMRKQEERF	11	Unmodified	_SLNMRKQEERF_					0	0	0			REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B	REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	479.913754	1436.71943	-0.14949	-7.1744E-05	-6.3767	-0.0030603	-6.5262	-0.003132	480.24392050196803	13.077	0.08534	13.01	12.936	13.022	-0.067496	-0.23863	-0.0087378	NaN	0.50596	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5722	+		43496	18594	25157	25158							0.018540885260790674
SLNNMQRQLAL	11	Unmodified	_SLNNMQRQLAL_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.59417724609375	3	429.899445	1286.6765	-0.19106	-8.2138E-05	-0.013881	-5.9676E-06	-0.20495	-8.8106E-05	429.8994123804083	35.442	0.84998	35.518	35.123	35.973	0.075306					78	30	3	0	0	0	0.33169	1	7051	7051		2.084	0	1	1312400			43497	806	25158	25159	52974	52974					0.04463318468697253
SLNNMQRQLAL	11	Unmodified	_SLNNMQRQLAL_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.59423828125	3	429.899445	1286.6765	-0.51891	-0.00022308	0.16688	7.1743E-05	-0.35203	-0.00015134	429.89954298328297	35.436	0.85911	35.514	35.141	36	0.077976					82	30	4	0	0	0	0.33169	1	7030	7030		3.8459	0	1	1081900			43498	806	25158	25159	52975	52975					0.04463318468697253
SLNPNTAQL	9	Unmodified	_SLNPNTAQL_					0	0	0			REV__ENSG00000174460|ENST00000310164|ZCCHC12	REV__ENSG00000174460|ENST00000310164|ZCCHC12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.97467041015625	2	479.253631	956.49271	0.30035	0.00014394	0.010285	4.9292E-06	0.31063	0.00014887	479.2534480522343	38.476	0.46394	38.567	38.32	38.784	0.090881					33	16	3	0	0	0	0.23235	1	8026	8026		7.609	0.50723	1	238420	+		43499	17835	25159	25160	52976	52976					0.012722930294785328
SLNQAVVSK	9	Unmodified	_SLNQAVVSK_					0	0	0		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7637634277344	2	473.271824	944.529095	-0.09576	-4.5321E-05	-0.18133	-8.582E-05	-0.27709	-0.00013114	473.27163151714313	23.28	0.59591	23.28	23.047	23.643	0					44	20	3	0	0	0	0.043673	1	3377	3377		55.249	28.025	1	136840			43500	6044	25160	25161	52977	52977					0.05461169926184084
SLNQAVVSK	9	Unmodified	_SLNQAVVSK_					0	0	0		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7637634277344	2	473.271824	944.529095	0.053756	2.5441E-05	-0.19958	-9.4455E-05	-0.14582	-6.9014E-05	473.2715960992805	23.369	0.61301	23.282	23.018	23.631	-0.087608					35	21	2	0	0	0	0.033439	1	3427	3427		59.052	25.608	1	207980			43501	6044	25160	25161	52978	52978					0.05461169926184084
SLNQAVVSK	9	Unmodified	_SLNQAVVSK_					0	0	0		ENSG00000166200|ENST00000388901|COPS2;nc|ENSG00000166200|P61201-2|COPS2	ENSG00000166200|ENST00000388901|COPS2	ENSG00000166200|ENST00000388901|COPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7637939453125	2	473.271824	944.529095	0.22459	0.00010629	-0.36923	-0.00017475	-0.14464	-6.8455E-05	473.27157606835425	23.37	0.78049	23.326	23.033	23.814	-0.044867					47	27	3	0	0	0	0.062981	1	3403	3403		48.073	16.804	1	180780			43502	6044	25160	25161	52979	52979					0.05461169926184084
SLNQWAVTF	9	Unmodified	_SLNQWAVTF_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2919311523438	2	533.271824	1064.5291	0.74986	0.00039988	-0.063785	-3.4015E-05	0.68607	0.00036586	533.2717378638841	47.998	0.73285	47.998	47.849	48.582	0					53	25	3	0	0	0	0.25989	1	10993	10993		14.838	14.838	1	1562000			43503	1867	25161	25162	52980	52980					-0.0005883007381726202
SLNQWAVTF	9	Unmodified	_SLNQWAVTF_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2922973632812	2	533.271824	1064.5291	0.74361	0.00039655	0.32349	0.00017251	1.0671	0.00056905	533.2719513936106	48.023	0.82752	48.071	47.836	48.663	0.047523					56	30	3	0	0	0	0.22188	1	10970	10970		20.454	2.3186	1	1575200			43504	1867	25161	25162	52981	52981					-0.0005883007381726202
SLNQWAVTF	9	Unmodified	_SLNQWAVTF_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2919921875	2	533.271824	1064.5291	0.69251	0.0003693	0.15204	8.108E-05	0.84455	0.00045038	533.2718022398768	47.976	0.82209	48.019	47.85	48.672	0.043324					50	30	3	0	0	0	0.22188	1	10952	10952		20.454	1.1966	1	2086400			43505	1867	25161	25162	52982	52982					-0.0005883007381726202
SLNRYTVK	8	Unmodified	_SLNRYTVK_					0	0	0			REV__ENST00000477218.1_1_2:114392665-114398608:+|nuORF	REV__ENST00000477218.1_1_2:114392665-114398608:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.253662109375	2	490.779816	979.545079	0.30004	0.00014725	-0.24849	-0.00012196	0.051543	2.5296E-05	490.77961258853946	16.992	0.50815	16.992	16.81	17.318	0					32	17	3	0	0	0	0.34198	1	1524	1524		10.824	2.9138	1	113120	+		43506	13880	25162	25163	52983	52983					0.054488761630864246
SLNRYTVK	8	Unmodified	_SLNRYTVK_					0	0	0			REV__ENST00000477218.1_1_2:114392665-114398608:+|nuORF	REV__ENST00000477218.1_1_2:114392665-114398608:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	490.779816	979.545079	0.14046	6.8936E-05	0.020399	1.0012E-05	0.16086	7.8948E-05	490.7798585292249	17.145	0.46053	17.027	16.828	17.289	-0.11739	0.014301	0.00012703	NaN	10.074	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108540	+		43507	13880	25162	25163							0.054488761630864246
SLNRYTVK	8	Unmodified	_SLNRYTVK_					0	0	0			REV__ENST00000477218.1_1_2:114392665-114398608:+|nuORF	REV__ENST00000477218.1_1_2:114392665-114398608:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	490.779816	979.545079	0.40424	0.00019839	-0.14589	-7.1599E-05	0.25835	0.00012679	490.77975632463176	17.08	0.48829	17.019	16.81	17.298	-0.060429	0.0064023	-3.6191E-05	NaN	10.074	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110770	+		43508	13880	25162	25163							0.054488761630864246
SLNSPEEKP	9	Unmodified	_SLNSPEEKP_					0	0	0			REV__ENSG00000178966|ENST00000445877|RMI1	REV__ENSG00000178966|ENST00000445877|RMI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7745666503906	2	500.750921	999.48729	0.13667	6.8437E-05	0.53932	0.00027007	0.67599	0.0003385	500.7513389087762	25.913	0.59695	25.891	25.416	26.013	-0.022238					30	21	2	0	0	0	0.24848	1	4217	4217		13.906	2.2658	1	99506	+		43509	18051	25163	25164	52984	52984					-0.012474305529963203
SLNVDVVK	8	Unmodified	_SLNVDVVK_					0	0	0		nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	nc|ENSG00000126214|Q07866-5|KLC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.8947448730469	2	437.255643	872.496732	0.051999	2.2737E-05	1.1693	0.00051128	1.2213	0.00053402	437.25599897336497	19.559	0.6769	19.503	19.227	19.904	-0.055693					45	23	3	0	0	0	0.32886	1	2339	2339		21.747	3.6117	1	112380			43510	3259	25164	25165	52985	52985					0.05538382523184282
SLPAKPRPF	9	Unmodified	_SLPAKPRPF_					0	0	0		PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant;PCLO|p.G2496Afs*27|1|0.04|ENSG00000186472|chr7:82953466-82953467|-/CTTAAATTTAGTGACTTCAG|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO	PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant	PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.84747314453125	2	506.800552	1011.58655	0.66955	0.00033933	0.78963	0.00040019	1.4592	0.00073951	506.8008962462514	37.632	0.64156	37.632	37.314	37.956	0					32	22	2	0	0	0	0.24311	1	7826	7826		11.64	0.81637	1	913290			43511	7621	25165	25166	52986	52986					0.08122056922422871
SLPAKPRPF	9	Unmodified	_SLPAKPRPF_					0	0	0		PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant;PCLO|p.G2496Afs*27|1|0.04|ENSG00000186472|chr7:82953466-82953467|-/CTTAAATTTAGTGACTTCAG|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO	PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant	PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	506.800552	1011.58655	0.35341	0.00017911	1.1782	0.00059709	1.5316	0.0007762	506.801136133217	37.751	0.92847	37.842	37.308	38.237	0.090881	0.16204	4.9845E-05	NaN	11.64	76	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	842340			43512	7621	25165	25166							0.08122056922422871
SLPAKPRPF	9	Unmodified	_SLPAKPRPF_					0	0	0		PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant;PCLO|p.G2496Afs*27|1|0.04|ENSG00000186472|chr7:82953466-82953467|-/CTTAAATTTAGTGACTTCAG|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO	PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant	PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.800552	1011.58655	0.30721	0.00015569	1.2361	0.00062646	1.5433	0.00078216	506.80112304074896	37.473	1.2617	37.566	37.275	38.537	0.093014	-0.11368	0.00010859	NaN	11.64	95	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1003200			43513	7621	25165	25166							0.08122056922422871
SLPAPVKL	8	Unmodified	_SLPAPVKL_					0	0	0		nc|ENSG00000155158|Q5VTQ0-7|TTC39B;ENST00000380853.1_1_9:15172019-15185442:-|nuORF;nc|ENSG00000155158|Q5VTQ0-5|TTC39B;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B	nc|ENSG00000155158|Q5VTQ0-7|TTC39B	nc|ENSG00000155158|Q5VTQ0-7|TTC39B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.58392333984375	2	412.765646	823.516739	0.51053	0.00021073	1.6513	0.0006816	2.1618	0.00089233	412.76669355809383	36.829	1.2928	36.922	36.306	37.599	0.093018					73	46	2	0	0	0	0.34092	1	7454	7454		4.756	0	1	236670			43514	5161	25166	25167	52987	52987					0.09792178253815109
SLPARPSR	8	Unmodified	_SLPARPSR_					0	0	0			REV__MMP21|p.S512Efs*21|1|0.04|ENSG00000154485|chr10:125766838-125766839|-/CTTC|frameshift_variant	REV__MMP21|p.S512Efs*21|1|0.04|ENSG00000154485|chr10:125766838-125766839|-/CTTC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.737548828125	2	442.259051	882.503549	0.32037	0.00014168	0.46685	0.00020647	0.78722	0.00034816	442.2591531157315	21.032	0.63234	21.032	20.798	21.431	0					42	21	3	0	0	0	0.34247	1	2779	2779		8.5933	0	1	212780	+		43515	16668	25167	25168	52988	52988					0.05759740194423557
SLPDALLPN	9	Unmodified	_SLPDALLPN_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.E1876Lfs*12|1|0.03|ENSG00000116641|chr1:62476133-62476134|-/GTGCAATTTTGTTTGAGAAAGA|frameshift_variant;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.268798828125	2	470.260925	938.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.394	1	55.394	54.894	55.894	0								0	0	0	0.12743	1	13226	13226		39.957	1.9833	1				43516	2734;12665	25168	25169	52989	52989					0.0355836517762782
SLPDLTPTF	9	Unmodified	_SLPDLTPTF_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.3041076660156	2	495.760758	989.506963	0.61146	0.00030314	-0.020361	-1.0094E-05	0.5911	0.00029305	495.76062694848537	74.407	0.49596	74.407	74.158	74.654	0					27	16	2	0	0	0	0.1854	1	19051	19051		32.305	0	1	379100			43517	7911	25169	25170	52990	52990					0.011789454577524339
SLPDLTPTF	9	Unmodified	_SLPDLTPTF_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3041687011719	2	495.760758	989.506963	0.47535	0.00023566	0.056296	2.7909E-05	0.53165	0.00026357	495.7606088087911	74.438	0.5181	74.408	74.154	74.673	-0.030663					27	17	2	0	0	0	0.11486	1	19080	19080		32.305	0	1	409180			43518	7911	25169	25170	52991	52991					0.011789454577524339
SLPDLTTPLK	10	Unmodified	_SLPDLTTPLK_					0	0	0		nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;KMT2E|p.K996Ffs*4|1|0.08|ENSG00000005483|chr7:105107442-105107443|-/TTCTGTATAT|frameshift_variant;nc|ENSG00000005483|Q8IZD2-8|KMT2E;KMT2E|p.S1340Nfs*22|1|0.04|ENSG00000005483|chr7:105110817-105110818|-/AACCAACTTTTTATAAAGGC|frameshift_variant;nc|ENSG00000005483|Q8IZD2-6|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8162231445312	2	542.816064	1083.61758	0.76123	0.00041321	-0.11612	-6.3031E-05	0.64511	0.00035017	542.8158796453913	54.408	0.62273	54.408	54.214	54.837	0					54	22	3	0	0	0	0.024262	1	12920	12920		67.081	34.295	1	1052500			43519	338	25170	25171	52992	52992					0.07911165445966617
SLPDLTTPLK	10	Unmodified	_SLPDLTTPLK_					0	0	0		nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;KMT2E|p.K996Ffs*4|1|0.08|ENSG00000005483|chr7:105107442-105107443|-/TTCTGTATAT|frameshift_variant;nc|ENSG00000005483|Q8IZD2-8|KMT2E;KMT2E|p.S1340Nfs*22|1|0.04|ENSG00000005483|chr7:105110817-105110818|-/AACCAACTTTTTATAAAGGC|frameshift_variant;nc|ENSG00000005483|Q8IZD2-6|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8162231445312	2	542.816064	1083.61758	0.80516	0.00043705	-0.11286	-6.1262E-05	0.6923	0.00037579	542.8159810793506	54.401	0.63676	54.464	54.168	54.805	0.063202					53	23	3	0	0	0	0.12628	1	12910	12910		42.312	16.044	1	1004600			43520	338	25170	25171	52993	52993					0.07911165445966617
SLPEDFYHF	9	Unmodified	_SLPEDFYHF_					0	0	0		ENST00000506125.1_1_4:170671685-170679028:-|nuORF;ENSG00000056050|ENST00000393381|HPF1	ENST00000506125.1_1_4:170671685-170679028:-|nuORF	ENST00000506125.1_1_4:170671685-170679028:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.7615966796875	2	577.761289	1153.50803	0.44771	0.00025867	-0.65191	-0.00037665	-0.2042	-0.00011798	577.760709660508	66.008	1.8798	66.008	65.458	67.338	0					172	66	4	0	0	0	0.062246	3	16592	16449;16592;16646		48.346	35.303	1	888270			43521	710	25171	25172	52994;52995;52996	52995					-0.06258840173336466
SLPEDFYHF	9	Unmodified	_SLPEDFYHF_					0	0	0		ENST00000506125.1_1_4:170671685-170679028:-|nuORF;ENSG00000056050|ENST00000393381|HPF1	ENST00000506125.1_1_4:170671685-170679028:-|nuORF	ENST00000506125.1_1_4:170671685-170679028:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.760009765625	2	577.761289	1153.50803	0.47926	0.0002769	-0.71817	-0.00041493	-0.23892	-0.00013804	577.7607405836379	65.886	1.9292	65.975	65.408	67.337	0.088882					172	69	4	0	0	0	0.068501	3	16395	16395;16528;16582		46.021	26.915	1	944880			43522	710	25171	25172	52997;52998;52999	52997					-0.06258840173336466
SLPEDFYHF	9	Unmodified	_SLPEDFYHF_					0	0	0		ENST00000506125.1_1_4:170671685-170679028:-|nuORF;ENSG00000056050|ENST00000393381|HPF1	ENST00000506125.1_1_4:170671685-170679028:-|nuORF	ENST00000506125.1_1_4:170671685-170679028:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.7620239257812	2	577.761289	1153.50803	0.33467	0.00019336	-0.69555	-0.00040186	-0.36088	-0.0002085	577.7608426963444	65.979	1.5883	65.965	65.396	66.984	-0.013588					131	57	3	0	0	0	0.062246	2	16583	16583;16632		48.346	32.197	1	925680			43523	710	25171	25172	53000;53001	53000					-0.06258840173336466
SLPEDIPVF	9	Unmodified	_SLPEDIPVF_					0	0	0		ENST00000549610.5_1_12:53895138-53897614:+|nuORF;ENST00000549679.5_1_12:53896962-53899929:+|nuORF;ENST00000548971.5_1_12:53896913-53899929:+|nuORF;nc|ENSG00000139546|Q15633-2|TARBP2;ENSG00000139546|ENST00000266987|TARBP2	ENST00000549610.5_1_12:53895138-53897614:+|nuORF	ENST00000549610.5_1_12:53895138-53897614:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3025817871094	2	508.768583	1015.52261	0.68408	0.00034804	0.18172	9.2454E-05	0.8658	0.00044049	508.7683660195488	78.468	0.78673	78.468	78.12	78.906	0					60	29	3	0	0	0	0.22596	1	20387	20387		10.824	2.9138	1	294950			43524	4244	25172	25173	53002	53002					0.015472319748255359
SLPEDIPVF	9	Unmodified	_SLPEDIPVF_					0	0	0		ENST00000549610.5_1_12:53895138-53897614:+|nuORF;ENST00000549679.5_1_12:53896962-53899929:+|nuORF;ENST00000548971.5_1_12:53896913-53899929:+|nuORF;nc|ENSG00000139546|Q15633-2|TARBP2;ENSG00000139546|ENST00000266987|TARBP2	ENST00000549610.5_1_12:53895138-53897614:+|nuORF	ENST00000549610.5_1_12:53895138-53897614:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3025817871094	2	508.768583	1015.52261	0.54776	0.00027868	0.22004	0.00011195	0.7678	0.00039063	508.7683786224337	78.369	0.7028	78.428	78.139	78.842	0.058151					61	25	3	0	0	0	0.22596	1	20371	20371		10.824	0	1	267700			43525	4244	25172	25173	53003	53003					0.015472319748255359
SLPEDIPVF	9	Unmodified	_SLPEDIPVF_					0	0	0		ENST00000549610.5_1_12:53895138-53897614:+|nuORF;ENST00000549679.5_1_12:53896962-53899929:+|nuORF;ENST00000548971.5_1_12:53896913-53899929:+|nuORF;nc|ENSG00000139546|Q15633-2|TARBP2;ENSG00000139546|ENST00000266987|TARBP2	ENST00000549610.5_1_12:53895138-53897614:+|nuORF	ENST00000549610.5_1_12:53895138-53897614:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3027648925781	2	508.768583	1015.52261	0.70916	0.0003608	0.040742	2.0728E-05	0.7499	0.00038153	508.76823931315397	78.497	0.9556	78.467	78.093	79.048	-0.030434					73	38	3	0	0	0	0.24311	1	20436	20436		7.2892	0	1	305860			43526	4244	25172	25173	53004	53004					0.015472319748255359
SLPELLVL	8	Unmodified	_SLPELLVL_					0	0	0		ENST00000330938.7_1_21:46285320-46293557:-|nuORF	ENST00000330938.7_1_21:46285320-46293557:-|nuORF	ENST00000330938.7_1_21:46285320-46293557:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.78680419921875	2	442.278586	882.54262	0.015872	7.0197E-06	-0.37423	-0.00016551	-0.35835	-0.00015849	442.2785389775974	73.611	0.41113	73.663	73.36	73.771	0.052361					22	14	2	0	0	0	0.34185	1	18814	18814		10.183	0	1	91816			43527	9442	25173	25174	53005	53005					0.09665027705409557
SLPELLVL	8	Unmodified	_SLPELLVL_					0	0	0		ENST00000330938.7_1_21:46285320-46293557:-|nuORF	ENST00000330938.7_1_21:46285320-46293557:-|nuORF	ENST00000330938.7_1_21:46285320-46293557:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.78662109375	2	442.278586	882.54262	0.15615	6.9062E-05	-0.018955	-8.3835E-06	0.1372	6.0679E-05	442.27858749796627	73.681	0.4232	73.651	73.373	73.796	-0.030655					25	15	2	0	0	0	0.34185	1	18836	18836		10.183	0	1	157740			43528	9442	25173	25174	53006	53006					0.09665027705409557
SLPESVPLF	9	Unmodified	_SLPESVPLF_					0	0	0		DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;DENND4A|p.L560Ffs*9|1|0.16|ENSG00000174485|chr15:65717887-65717905|AAATGCCTCTTGGATTTCC/-|frameshift_variant;ENST00000568515.1_1_15:66007788-66048788:-|nuORF	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7712097167969	2	494.771126	987.527698	0.58947	0.00029165	-0.35054	-0.00017344	0.23892	0.00011821	494.7708741763846	77.129	1.3969	77.129	76.693	78.09	0					129	51	3	0	0	0	0.0036289	1	19898	19898		104.8	34.084	1	3271100			43529	261	25174	25175	53007	53007					0.0334353583742768
SLPESVPLF	9	Unmodified	_SLPESVPLF_					0	0	0		DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;DENND4A|p.L560Ffs*9|1|0.16|ENSG00000174485|chr15:65717887-65717905|AAATGCCTCTTGGATTTCC/-|frameshift_variant;ENST00000568515.1_1_15:66007788-66048788:-|nuORF	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7712097167969	2	494.771126	987.527698	0.50809	0.00025139	-0.23384	-0.0001157	0.27425	0.00013569	494.77091173997036	76.987	1.5403	77.042	76.621	78.161	0.055412					160	55	4	0	0	0	0.018829	1	19873	19873		81.613	30.758	1	2757100			43530	261	25174	25175	53008	53008					0.0334353583742768
SLPESVPLF	9	Unmodified	_SLPESVPLF_					0	0	0		DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;DENND4A|p.L560Ffs*9|1|0.16|ENSG00000174485|chr15:65717887-65717905|AAATGCCTCTTGGATTTCC/-|frameshift_variant;ENST00000568515.1_1_15:66007788-66048788:-|nuORF	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7711486816406	2	494.771126	987.527698	0.69072	0.00034175	-0.39509	-0.00019548	0.29562	0.00014627	494.77083277547155	77.136	1.6359	77.105	76.509	78.145	-0.031334					179	59	4	0	0	0	0.018829	1	19895	19895		81.613	24.142	1	3141400			43531	261	25174	25175	53009	53009					0.0334353583742768
SLPFNEID	8	Unmodified	_SLPFNEID_					0	0	0			REV__nc|ENSG00000170471|Q86X10-2|RALGAPB	REV__nc|ENSG00000170471|Q86X10-2|RALGAPB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7148742675781	2	467.729458	933.444362	-0.063021	-2.9477E-05	0.19318	9.0354E-05	0.13016	6.0877E-05	467.7295704076477	18.264	0.47824	18.206	17.98	18.458	-0.058174					26	16	2	0	0	0	0.4419	1	1928	1928		8.5933	1.304	1	66014	+		43532	17581	25175	25176	53010	53010					-0.025022006104450156
SLPGLSSVLA	10	Unmodified	_SLPGLSSVLA_					0	0	0		ENST00000579728.5_1_17:45885659-45892067:-|nuORF;ENST00000583167.5_1_17:45885659-45892067:-|nuORF	ENST00000579728.5_1_17:45885659-45892067:-|nuORF	ENST00000579728.5_1_17:45885659-45892067:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2767639160156	2	472.276575	942.538597	-0.022625	-1.0685E-05	-0.1049	-4.9542E-05	-0.12753	-6.0227E-05	472.27663403920025	31.035	0.93423	31.035	30.701	31.636	0					78	33	4	0	0	0	0.21644	1	5724	5724		30.637	0	1	774510			43533	12071	25176	25177	53011	53011					0.06502938211701803
SLPGMIEAAH	10	Unmodified	_SLPGMIEAAH_					0	0	0			REV__ENST00000595138.1_1_19:43519232-43530599:-|nuORF	REV__ENST00000595138.1_1_19:43519232-43530599:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7444458007812	2	513.257859	1024.50117	0.16246	8.3386E-05	0.64384	0.00033045	0.8063	0.00041384	513.2582751802059	39.402	1.1224	39.494	39.078	40.2	0.09267					85	37	3	0	0	0	0.31629	1	8520	8520		10.074	3.3508	1	549730	+		43534	22590	25177	25178	53012	53012					-0.010104763255412763
SLPGNFFYL	9	Unmodified	_SLPGNFFYL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.7747802734375	2	529.271293	1056.52803	0.65904	0.00034881	0.072616	3.8434E-05	0.73166	0.00038725	529.2709123987898	87.856	0.94806	87.856	87.325	88.273	0					72	45	2	0	0	0	0.0028127	1	23118	23118		103.75	52.893	1	1548700			43535	4816	25178	25179	53013	53013					0.002029555572789832
SLPGPNPRLT	10	Unmodified	_SLPGPNPRLT_					0	0	0		ENST00000354992.6_1_22:34316098-34316365:-|nuORF	ENST00000354992.6_1_22:34316098-34316365:-|nuORF	ENST00000354992.6_1_22:34316098-34316365:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3612060546875	2	526.298373	1050.58219	0.17214	9.0597E-05	0.57253	0.00030132	0.74467	0.00039192	526.2990158413244	28.13	0.58919	28.126	27.822	28.411	-0.0042572					27	20	2	0	0	0	0.31629	1	4873	4873		6.2058	1.4498	1	174900			43536	9605	25179	25180	53014	53014					0.05892547708845086
SLPHRRPHF	9	Unmodified	_SLPHRRPHF_					0	0	0		nc|ENSG00000120885|P10909-3|CLU;nc|ENSG00000120885|P10909-4|CLU;ENST00000522299.5_1_8:27457218-27472184:-|nuORF;nc|ENSG00000120885|P10909-6|CLU;ENSG00000120885|ENST00000316403|CLU;nc|ENSG00000120885|P10909-5|CLU;nc|ENSG00000120885|P10909-2|CLU	nc|ENSG00000120885|P10909-3|CLU	nc|ENSG00000120885|P10909-3|CLU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.8176879882812	2	573.817599	1145.62064	0.074457	4.2725E-05	0.17553	0.00010072	0.24999	0.00014345	573.8176739174828	19.537	1.064	19.537	18.952	20.016	0					108	37	4	0	0	0	0.0059482	5	2263	2178;2221;2263;2315;2369		85.642	53.336	1	591120			43537	2972	25180	25181	53015;53016;53017;53018;53019	53017					0.05365898134027702
SLPHRRPHF	9	Unmodified	_SLPHRRPHF_					0	0	0		nc|ENSG00000120885|P10909-3|CLU;nc|ENSG00000120885|P10909-4|CLU;ENST00000522299.5_1_8:27457218-27472184:-|nuORF;nc|ENSG00000120885|P10909-6|CLU;ENSG00000120885|ENST00000316403|CLU;nc|ENSG00000120885|P10909-5|CLU;nc|ENSG00000120885|P10909-2|CLU	nc|ENSG00000120885|P10909-3|CLU	nc|ENSG00000120885|P10909-3|CLU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8176879882812	2	573.817599	1145.62064	0.35032	0.00020102	-0.020396	-1.1703E-05	0.32992	0.00018931	573.817525204588	19.751	1.096	19.635	19.058	20.154	-0.11592					107	37	4	0	0	0	0.047483	5	2331	2241;2285;2331;2374;2429		53.833	26.949	1	653250			43538	2972	25180	25181	53020;53021;53022;53023;53024	53022					0.05365898134027702
SLPHRRPHF	9	Unmodified	_SLPHRRPHF_					0	0	0		nc|ENSG00000120885|P10909-3|CLU;nc|ENSG00000120885|P10909-4|CLU;ENST00000522299.5_1_8:27457218-27472184:-|nuORF;nc|ENSG00000120885|P10909-6|CLU;ENSG00000120885|ENST00000316403|CLU;nc|ENSG00000120885|P10909-5|CLU;nc|ENSG00000120885|P10909-2|CLU	nc|ENSG00000120885|P10909-3|CLU	nc|ENSG00000120885|P10909-3|CLU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.8178100585938	2	573.817599	1145.62064	0.29689	0.00017036	0.035559	2.0404E-05	0.33245	0.00019076	573.817586847955	19.671	0.91753	19.615	19.172	20.09	-0.055693					99	32	4	0	0	0	0.012929	4	2320	2223;2271;2320;2371		74.929	48.045	1	620920			43539	2972	25180	25181	53025;53026;53027;53028	53027					0.05365898134027702
SLPHSAAYPF	10	Unmodified	_SLPHSAAYPF_					0	0	0		nc|ENSG00000103995|O94986-3|CEP152;ENSG00000103995|ENST00000380950|CEP152	nc|ENSG00000103995|O94986-3|CEP152	nc|ENSG00000103995|O94986-3|CEP152	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2736206054688	2	545.271824	1088.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.504	1	52.503	52.003	53.003	-0.00080872								0	0	0	0.28989	1	12322	12322		29.082	0.90835	1				43540	1860	25181	25182	53029	53029					-0.011628300738266262
SLPKALKLF	9	Unmodified	_SLPKALKLF_					0	0	0			REV__ENSG00000180370|ENST00000327134|PAK2	REV__ENSG00000180370|ENST00000327134|PAK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.30218505859375	2	508.828778	1015.643	0.1349	6.8639E-05	-0.67907	-0.00034553	-0.54418	-0.00027689	508.82806639673964	49.327	0.62015	49.359	48.954	49.574	0.032043					37	21	2	0	0	0	0.24913	1	11268	11268		7.9102	0	1	179400	+		43541	13841	25182	25183	53030	53030					0.13580684759074302
SLPKKLALL	9	Unmodified	_SLPKKLALL_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53;ENST00000588858.5_1_19:13886394-13889009:+|nuORF	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.3026123046875	2	491.836603	981.658653	0.62795	0.00030885	-0.4726	-0.00023244	0.15535	7.6406E-05	491.83621736604584	45.95	0.5282	45.95	45.666	46.194	0					40	18	3	0	0	0	0.25066	1	10271	10271		11.64	8.0438	1	624240			43542	1943	25183	25184	53031	53031					0.1670897127612534
SLPKKLALL	9	Unmodified	_SLPKKLALL_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53;ENST00000588858.5_1_19:13886394-13889009:+|nuORF	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.3025207519531	2	491.836603	981.658653	0.20747	0.00010204	0.10268	5.0504E-05	0.31015	0.00015254	491.83656718809266	45.817	0.61661	45.877	45.619	46.236	0.059834					43	21	3	0	0	0	0.2451	1	10228	10228		15.847	7.937	1	853190			43543	1943	25183	25184	53032	53032					0.1670897127612534
SLPKKLALL	9	Unmodified	_SLPKKLALL_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53;ENST00000588858.5_1_19:13886394-13889009:+|nuORF	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.3026428222656	2	491.836603	981.658653	0.5379	0.00026456	-0.21678	-0.00010662	0.32112	0.00015794	491.83635412551763	45.843	0.47147	45.908	45.675	46.146	0.065048					36	16	3	0	0	0	0.2451	1	10253	10253		15.847	9.124	1	585420			43544	1943	25183	25184	53033	53033					0.1670897127612534
SLPKLIQL	8	Unmodified	_SLPKLIQL_					0	0	0			REV__ENSG00000128789|ENST00000317615|PSMG2	REV__ENSG00000128789|ENST00000317615|PSMG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.30035400390625	2	456.299853	910.585153	0.23078	0.00010531	1.7831	0.00081365	2.0139	0.00091896	456.30024318151203	29.914	0.84428	29.914	29.774	30.619	0					55	29	3	0	0	0	0.34218	1	5437	5437		5.2307	0	1	204140	+		43545	15387	25184	25185	53034	53034					0.1262842283365444
SLPKRPWLHKQ	11	Unmodified	_SLPKRPWLHKQ_					0	0	0			REV__ENST00000370355.2_1_10:102122289-102122706:+|nuORF	REV__ENST00000370355.2_1_10:102122289-102122706:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.9415283203125	3	463.941973	1388.80409	0.24282	0.00011265	-1.152	-0.00053445	-0.90916	-0.0004218	463.9414002694606	53.181	0.69463	53.172	52.812	53.507	-0.0096092					52	25	3	0	0	0	0.46704	1	12549	12549		2.4348	0.18206	1	687730	+		43546	20376	25185	25186	53035	53035					0.1252382712502822
SLPLIGPAPF	10	Unmodified	_SLPLIGPAPF_					0	0	0			REV__ENST00000331434.6_1_8:146277984-146278266:+|nuORF	REV__ENST00000331434.6_1_8:146277984-146278266:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.746826171875	2	506.29731	1010.58007	0.63812	0.00032308	-0.97958	-0.00049596	-0.34146	-0.00017288	506.29671546165093	58.286	0.51512	58.269	58.005	58.52	-0.0172					31	18	2	0	0	0	0.31482	1	14185	14185		11.64	0.81637	1	317710	+		43547	20043	25186	25187	53036	53036					0.07520118971046941
SLPLLLLLLG	10	Unmodified	_SLPLLLLLLG_					0	0	0		nc|ENSG00000170476|Q8WU39-5|MZB1;nc|ENSG00000170476|Q8WU39-4|MZB1;ENST00000503120.5_1_5:138725194-138725560:-|nuORF;nc|ENSG00000170476|Q8WU39-2|MZB1;ENSG00000170476|ENST00000302125|MZB1	REV__nc|ENSG00000163453|Q16270-2|IGFBP7	REV__nc|ENSG00000163453|Q16270-2|IGFBP7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.27734375	2	526.359911	1050.70527	0.6748	0.00035519	3.0665	0.0016141	3.7413	0.0019693	526.8631292511956	34.066	0.52846	34.066	33.808	34.336	0					26	18	2	0	0	0	0.32033	1	6644	6644		3.5965	0	1	209780			43548	17053	25187	25188	53037	53037					0.18194411107424457
SLPLVDTHSK	10	Unmodified	_SLPLVDTHSK_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000487938.5_1_10:17278234-17279267:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.8035888671875	2	548.803488	1095.59242	0.37578	0.00020623	-0.37958	-0.00020831	-0.003792	-2.0811E-06	548.8031870088099	30.831	0.89334	30.831	30.391	31.284	0					79	31	3	0	0	0	0.0027997	3	5697	5649;5697;5753		104.48	54.551	1	1286200			43549	537	25188	25189	53038;53039;53040	53039					0.04845110643418593
SLPLVDTHSK	10	Unmodified	_SLPLVDTHSK_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000487938.5_1_10:17278234-17279267:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.8035278320312	2	548.803488	1095.59242	0.42396	0.00023267	-0.41224	-0.00022624	0.011723	6.4335E-06	548.8032335862318	30.793	0.95059	30.821	30.382	31.332	0.027946					87	33	4	0	0	0	0.0044422	3	5692	5639;5692;5747		94.909	53.069	1	1247400			43550	537	25188	25189	53041;53042;53043	53042					0.04845110643418593
SLPLVDTHSK	10	Unmodified	_SLPLVDTHSK_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PDPR-VIM|1|fusion;ENST00000487938.5_1_10:17278234-17279267:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8035888671875	2	548.803488	1095.59242	0.30604	0.00016796	-0.33817	-0.00018559	-0.032124	-1.763E-05	548.803145977436	30.762	0.82254	30.79	30.394	31.216	0.027157					82	29	4	0	0	0	0.0014295	2	5686	5639;5686		115.06	65.126	1	1249100			43551	537	25188	25189	53044;53045	53045					0.04845110643418593
SLPPEKSGEIW	11	Unmodified	_SLPPEKSGEIW_					0	0	0		CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant;ENSG00000176102|ENST00000323959|CSTF3	CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.90838623046875	3	414.883677	1241.6292	-0.094454	-3.9187E-05	0.8614	0.00035738	0.76694	0.00031819	415.21841367193673	24.893	0.9805	24.861	24.426	25.406	-0.031408					77	33	4	0	0	0	0.33303	1	3813	3813		2.4348	0	1	147030			43552	246	25189	25190	53046	53046					0.0180536246932661
SLPPFFCLP	9	Unmodified	_SLPPFFCLP_					0	0	0		ENST00000468045.5_1_2:27353966-27354122:-|nuORF	ENST00000468045.5_1_2:27353966-27354122:-|nuORF	ENST00000468045.5_1_2:27353966-27354122:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2274169921875	2	510.764789	1019.51502	-0.11228	-5.7349E-05	0.86776	0.00044322	0.75548	0.00038587	510.7651026536887	18.617	0.7048	18.559	18.341	19.046	-0.058172					53	24	3	0	0	0	0.23783	1	2004	2004		18.135	18.135	1	392910			43553	10832	25190	25191	53047	53047					0.006048011735288128
SLPPSRLLL	9	Unmodified	_SLPPSRLLL_					0	0	0		ENSG00000175782|ENST00000398004|SLC35E3	ENSG00000175782|ENST00000398004|SLC35E3	ENSG00000175782|ENST00000398004|SLC35E3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.2816467285156	2	498.316035	994.617516	0.35251	0.00017566	0.40626	0.00020244	0.75877	0.00037811	498.3161814355477	68.972	0.67513	68.952	68.68	69.355	-0.01915					38	23	2	0	0	0	0.23784	1	17376	17376		19.257	6.2145	1	301690			43554	6883	25191	25192	53048	53048					0.11999210236660929
SLPPYQQLA	9	Unmodified	_SLPPYQQLA_					0	0	0			REV__ENST00000481001.5_1_3:49053397-49053514:-|nuORF	REV__ENST00000481001.5_1_3:49053397-49053514:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7742614746094	2	508.7742	1015.53385	0.61585	0.00031333	-1.1969	-0.00060896	-0.58107	-0.00029563	508.7740207691811	45.629	0.93251	45.629	45.041	45.974	0					59	33	3	0	0	0	0.28128	1	10201	10201		11.64	0	1	663420	+		43555	21205	25192	25193	53049	53049					0.026700540689603258
SLPQPITL	8	Unmodified	_SLPQPITL_					0	0	0			REV__nc|ENSG00000265992|Q1W209|ESRG	REV__nc|ENSG00000265992|Q1W209|ESRG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.25238037109375	2	434.760561	867.506569	-0.057082	-2.4817E-05	-0.54055	-0.00023501	-0.59763	-0.00025983	434.7604739850603	71.208	0.9002	71.208	70.873	71.773	0					55	31	3	0	0	0	0.20518	1	18071	18071		42.095	0	1	1235700	+		43556	23229	25193	25194	53050	53050					0.06751570528570028
SLPQPITL	8	Unmodified	_SLPQPITL_					0	0	0			REV__nc|ENSG00000265992|Q1W209|ESRG	REV__nc|ENSG00000265992|Q1W209|ESRG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2519836425781	2	434.760561	867.506569	-0.015405	-6.6977E-06	-0.45489	-0.00019777	-0.4703	-0.00020447	434.7604949713238	71.219	0.94349	71.279	70.928	71.872	0.060783					59	33	3	0	0	0	0.27124	1	18150	18150		34.102	0	1	1219600	+		43557	23229	25193	25194	53051	53051					0.06751570528570028
SLPRAQFTRRR	11	Unmodified	_SLPRAQFTRRR_					0	0	0			REV__ENSG00000197077|ENST00000358431|KIAA1671	REV__ENSG00000197077|ENST00000358431|KIAA1671	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.80084228515625	3	463.272493	1386.79565	0.18408	8.5281E-05	0.9714	0.00045002	1.1555	0.0005353	463.2727812547726	36.263	0.52555	36.346	36.259	36.785	0.082359					29	18	2	0	0	0	0.33189	1	7415	7415		5.8681	3.4334	1	309430	+		43558	18707	25194	25195	53052	53052					0.11772273208384831
SLPRKLLQPE	10	Unmodified	_SLPRKLLQPE_					0	0	0		ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.7199096679688	2	590.856055	1179.69756	0.37951	0.00022423	0.84089	0.00049685	1.2204	0.00072108	590.8564219706992	49.69	0.63942	49.735	49.368	50.007	0.044891					37	23	2	0	0	0	0.31039	1	11492	11492		13.042	0	1	184710			43559	3701	25195	25196	53053	53053					0.11489651839860926
SLPRKLLQPE	10	Unmodified	_SLPRKLLQPE_					0	0	0		ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.7197875976562	2	590.856055	1179.69756	0.36638	0.00021648	0.2111	0.00012473	0.57747	0.0003412	590.8565494587361	49.792	0.71927	49.813	49.345	50.064	0.020695					34	26	2	0	0	0	0.31039	1	11486	11486		13.042	0	1	228190			43560	3701	25195	25196	53054	53054					0.11489651839860926
SLPRKQKGL	9	Unmodified	_SLPRKQKGL_					0	0	0			REV__ENST00000308527.5_1_15:75940532-75940874:+|nuORF	REV__ENST00000308527.5_1_15:75940532-75940874:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.3088989257812	2	513.824558	1025.63456	0.40457	0.00020788	2.126	0.0010924	2.5306	0.0013003	513.8256755378471	40.765	0.75166	40.765	40.259	41.01	0					40	27	2	0	0	0	0.25202	1	8657	8657		10.824	6.0679	1	114200	+		43561	19880	25196	25197	53055	53055					0.12277130842471706
SLPRKQKGL	9	Unmodified	_SLPRKQKGL_					0	0	0			REV__ENST00000308527.5_1_15:75940532-75940874:+|nuORF	REV__ENST00000308527.5_1_15:75940532-75940874:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.308837890625	2	513.824558	1025.63456	0.42132	0.00021648	2.6103	0.0013412	3.0316	0.0015577	513.8258000268168	40.45	0.66209	40.542	40.343	41.005	0.09267					33	24	2	0	0	0	0.25202	1	8612	8612		10.824	0.75	1	122910	+		43562	19880	25196	25197	53056	53056					0.12277130842471706
SLPSFRSTI	9	Unmodified	_SLPSFRSTI_					0	0	0		ENST00000397117.5_1_3:10362382-10362535:-|nuORF	ENST00000397117.5_1_3:10362382-10362535:-|nuORF	ENST00000397117.5_1_3:10362382-10362535:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2805480957031	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.538	1	83.538	83.038	84.038	0								0	0	0	0.22065	1	21859	21859		15.847	0	1				43563	10131	25197	25198	53057	53057					0.04173456443231771
SLPSFRSTI	9	Unmodified	_SLPSFRSTI_					0	0	0		ENST00000397117.5_1_3:10362382-10362535:-|nuORF	ENST00000397117.5_1_3:10362382-10362535:-|nuORF	ENST00000397117.5_1_3:10362382-10362535:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.28070068359375	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.396	1	86.396	85.896	86.896	0								0	0	0	0.24066	1	22737	22737		9.3831	1.473	1				43564	10131	25197	25198	53058	53058					0.04173456443231771
SLPSVKKAP	9	Unmodified	_SLPSVKKAP_					0	0	0		nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.8008728027344	2	463.78711	925.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.444	1	38.444	37.944	38.944	0								0	0	0	0.2489	1	8016	8016		6.7232	0	1				43565	568	25198	25199	53059	53059					0.09390948311227021
SLPTEKFAIRK	11	Unmodified	_SLPTEKFAIRK_					0	0	0		nc|ENSG00000085831|Q5SRH9-2|TTC39A;ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.5905456542969	3	430.590717	1288.75032	-0.14826	-6.3838E-05	-0.074155	-3.1931E-05	-0.22241	-9.5768E-05	430.59055271820364	32.969	1.0912	32.969	32.662	33.753	0					93	38	4	0	0	0	0.18539	2	6362	6312;6362		32.518	14.946	1	1964700			43566	1265	25199	25200	53060;53061	53061					0.11749609902631164
SLPTEKFAIRK	11	Unmodified	_SLPTEKFAIRK_					0	0	0		nc|ENSG00000085831|Q5SRH9-2|TTC39A;ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.590576171875	3	430.590717	1288.75032	-0.039441	-1.6983E-05	-0.15528	-6.6861E-05	-0.19472	-8.3844E-05	430.59053018594886	32.862	1.0213	32.917	32.534	33.555	0.055309					89	36	4	0	0	0	0.30623	2	6325	6279;6325		21.666	8.1311	1	1885100			43567	1265	25199	25200	53062;53063	53063					0.11749609902631164
SLPTEKFAIRK	11	Unmodified	_SLPTEKFAIRK_					0	0	0		nc|ENSG00000085831|Q5SRH9-2|TTC39A;ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	nc|ENSG00000085831|Q5SRH9-2|TTC39A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.5904541015625	3	430.590717	1288.75032	-0.090558	-3.8993E-05	-0.1857	-7.996E-05	-0.27626	-0.00011895	430.5905237661142	32.879	0.9059	32.934	32.603	33.509	0.054371					82	32	4	0	0	0	0.2454	2	6331	6281;6331		27.129	12.291	1	1927100			43568	1265	25199	25200	53064;53065	53065					0.11749609902631164
SLPTPPQQPF	10	Unmodified	_SLPTPPQQPF_					0	0	0		nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2822265625	2	556.292756	1110.57096	-0.027024	-1.5033E-05	0.91589	0.00050951	0.88887	0.00049447	556.2941671752172	39.466	0.80433	39.466	39.164	39.968	0					74	29	4	0	0	0	0.21644	1	8396	8396		30.637	1.555	1	695080			43569	1161	25200	25201	53066	53066					0.02009725614720992
SLPVARTL	8	Unmodified	_SLPVARTL_					0	0	0			REV__ENST00000568086.1_1_16:67204440-67205161:+|nuORF	REV__ENST00000568086.1_1_16:67204440-67205161:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.22869873046875	2	428.766178	855.517802	-0.019377	-8.3084E-06	0.9694	0.00041565	0.95002	0.00040734	428.76641945194297	46.665	0.39526	46.72	46.544	46.939	0.054371					21	13	2	0	0	0	0.32435	1	10585	10585		23.148	0	1	542180	+		43570	22388	25201	25202	53067	53067					0.084263926227095
SLPVASSSTLL	11	Unmodified	_SLPVASSSTLL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.3173828125	2	537.805697	1073.59684	0.45602	0.00024525	-0.32124	-0.00017276	0.13479	7.2489E-05	537.8055909631605	37.409	0.62396	37.497	37.193	37.817	0.08741					55	22	3	0	0	0	0.29431	1	7735	7735		22.736	22.736	1	750170			43571	1207	25202	25203	53068	53068					0.06298575066330159
SLPVFLSIS	9	Unmodified	_SLPVFLSIS_					0	0	0		ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.734619140625	2	481.781493	961.548434	0.54981	0.00026489	-0.547	-0.00026353	0.0028064	1.3521E-06	481.7810430242796	78.237	0.59935	78.296	77.955	78.554	0.058151					29	21	2	0	0	0	0.21389	1	20250	20250		25.399	0	1	115610			43572	1017	25203	25204	53069	53069					0.06612126217100922
SLPVFLSIS	9	Unmodified	_SLPVFLSIS_					0	0	0		ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7346496582031	2	481.781493	961.548434	0.76938	0.00037067	-0.65192	-0.00031408	0.11746	5.6591E-05	481.7810389278437	78.279	0.54909	78.248	77.983	78.532	-0.030434					33	20	2	0	0	0	0.2322	1	20265	20265		20.454	0	1	142410			43573	1017	25203	25204	53070	53070					0.06612126217100922
SLPVLTGVVA	10	Unmodified	_SLPVLTGVVA_					0	0	0		ENST00000482384.1_1_1:109757484-109757604:+|nuORF	ENST00000482384.1_1_1:109757484-109757604:+|nuORF	ENST00000482384.1_1_1:109757484-109757604:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.9747009277344	2	478.294768	954.574983	0.034334	1.6422E-05	-2.5915	-0.0012395	-2.5571	-0.0012231	478.293498460719	38.338	0.28361	38.338	38.177	38.46	0					12	9	2	0	0	0	0.30586	1	8018	8018		5.7319	0	1	92068			43574	11045	25204	25205	53071	53071					0.09587815108409359
SLPWNSLLS	9	Unmodified	_SLPWNSLLS_					0	0	0		ENST00000244050.2_1_20:48604632-48604926:+|nuORF	ENST00000244050.2_1_20:48604632-48604926:+|nuORF	ENST00000244050.2_1_20:48604632-48604926:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7742614746094	2	508.7742	1015.53385	0.61585	0.00031333	-1.1969	-0.00060896	-0.58107	-0.00029563	508.7740207691811	45.629	0.93251	45.629	45.041	45.974	0					59	33	3	0	0	0	0.2719	1	10249	10249		13.042	0	1	663420			43575	8892	25205	25206	53072	53072					0.026700540689716945
SLPWNSLLS	9	Unmodified	_SLPWNSLLS_					0	0	0		ENST00000244050.2_1_20:48604632-48604926:+|nuORF	ENST00000244050.2_1_20:48604632-48604926:+|nuORF	ENST00000244050.2_1_20:48604632-48604926:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	508.7742	1015.53385	0.51268	0.00026084	-1.0933	-0.00055624	-0.58062	-0.0002954	508.77415116626935	45.516	0.53958	45.576	45.253	45.792	0.059834	-0.014448	9.6926E-05	NaN	13.042	55	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	817950			43576	8892	25205	25206							0.026700540689716945
SLPWNSLLS	9	Unmodified	_SLPWNSLLS_					0	0	0		ENST00000244050.2_1_20:48604632-48604926:+|nuORF	ENST00000244050.2_1_20:48604632-48604926:+|nuORF	ENST00000244050.2_1_20:48604632-48604926:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.7742	1015.53385	0.40534	0.00020623	-1.2794	-0.00065092	-0.87405	-0.00044469	508.77434988406026	45.501	0.65052	45.566	45.274	45.925	0.065048	-0.024383	-9.2432E-05	NaN	13.042	67	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	921850			43577	8892	25205	25206							0.026700540689716945
SLQAFKSF	8	Unmodified	_SLQAFKSF_					0	0	0		ENST00000497388.5_1_7:129933020-129939280:+|nuORF;ENST00000470542.5_1_7:129933020-129945674:+|nuORF;nc|ENSG00000128510|Q9UI42-2|CPA4;ENSG00000128510|ENST00000222482|CPA4	ENST00000497388.5_1_7:129933020-129939280:+|nuORF	ENST00000497388.5_1_7:129933020-129939280:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.29437255859375	2	464.25036	926.486168	0.2644	0.00012275	-0.96363	-0.00044737	-0.69923	-0.00032462	464.2498716047186	42.155	0.54071	42.246	42.067	42.607	0.091362					24	18	2	0	0	0	0.3408	1	9133	9133		14.838	1.3304	1	183030			43578	3370	25206	25207	53073	53073					0.01998399868762135
SLQAFKSF	8	Unmodified	_SLQAFKSF_					0	0	0		ENST00000497388.5_1_7:129933020-129939280:+|nuORF;ENST00000470542.5_1_7:129933020-129945674:+|nuORF;nc|ENSG00000128510|Q9UI42-2|CPA4;ENSG00000128510|ENST00000222482|CPA4	ENST00000497388.5_1_7:129933020-129939280:+|nuORF	ENST00000497388.5_1_7:129933020-129939280:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	464.25036	926.486168	-0.27031	-0.00012549	-0.053417	-2.4799E-05	-0.32373	-0.00015029	464.2502246865521	42.482	0.67637	42.482	42.306	42.982	0	0.12605	0.00038783	NaN	14.838	30	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195490			43579	3370	25206	25207							0.01998399868762135
SLQAFKSF	8	Unmodified	_SLQAFKSF_					0	0	0		ENST00000497388.5_1_7:129933020-129939280:+|nuORF;ENST00000470542.5_1_7:129933020-129945674:+|nuORF;nc|ENSG00000128510|Q9UI42-2|CPA4;ENSG00000128510|ENST00000222482|CPA4	ENST00000497388.5_1_7:129933020-129939280:+|nuORF	ENST00000497388.5_1_7:129933020-129939280:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	464.25036	926.486168	0.040267	1.8694E-05	-0.39918	-0.00018532	-0.35892	-0.00016663	464.24977151070965	42.254	0.63786	42.339	42.093	42.731	0.085201	-0.016522	6.6788E-05	NaN	14.838	35	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188680			43580	3370	25206	25207							0.01998399868762135
SLQDEYTRCL	10	Unmodified	_SLQDEYTRCL_					0	0	0			REV__ENSG00000078814|ENST00000262873|MYH7B	REV__ENSG00000078814|ENST00000262873|MYH7B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.88641357421875	3	409.860656	1226.56014	0.042965	1.761E-05	0.41246	0.00016905	0.45542	0.00018666	409.86104656833476	26.882	0.13818	26.861	26.788	26.926	-0.021412					5	4	2	0	0	0	0.31629	1	4475	4475		5.7834	2.4638	1	21574	+		43581	13863	25207	25208	53074	53074					-0.04408044821889234
SLQDMASRVQ	10	Unmodified	_SLQDMASRVQ_					0	0	0		ENSG00000141030|ENST00000268717|COPS3;nc|ENSG00000141030|Q9UNS2-2|COPS3	ENSG00000141030|ENST00000268717|COPS3	ENSG00000141030|ENST00000268717|COPS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.3091430664062	2	567.78223	1133.54991	0.57678	0.00032748	0.28177	0.00015998	0.85854	0.00048747	567.7821469228975	55.494	0.45642	55.565	55.347	55.804	0.070885					25	16	2	0	0	0	0.31323	1	13189	13189		15.248	1.3424	1	227090			43582	4354	25208	25209	53075	53075					-0.011526077564667503
SLQFDLVLL	9	Unmodified	_SLQFDLVLL_					0	0	0			REV__ENST00000310441.11_1_X:153213093-153213690:-|nuORF	REV__ENST00000310441.11_1_X:153213093-153213690:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2645263671875	2	524.307875	1046.6012	0.55118	0.00028899	-0.67862	-0.0003558	-0.12743	-6.6815E-05	524.8096495916502	53.192	0.54023	53.183	52.837	53.377	-0.0096054					30	19	2	0	0	0	0.22061	1	12468	12468		18.146	0	1	254580	+		43583	19893	25209	25210	53076	53076					0.07976084279880524
SLQHESDL	8	Unmodified	_SLQHESDL_					0	0	0		ENSG00000254004|ENST00000523638|ZNF260	ENSG00000254004|ENST00000523638|ZNF260	ENSG00000254004|ENST00000523638|ZNF260	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2161560058594	2	464.722164	927.429775	0.17636	8.1957E-05	-1.6136	-0.00074988	-1.4372	-0.00066792	464.7211298586204	69.067	0.36957	69.048	68.843	69.212	-0.019157					16	12	2	0	0	0	0.42446	1	17415	17415		14.582	0	1	84149			43584	8608	25210	25211	53077	53077					-0.0368427275857357
SLQHPLGRH	9	Unmodified	_SLQHPLGRH_					0	0	0			REV__ENST00000474952.5_1_6:10406972-10411829:-|nuORF	REV__ENST00000474952.5_1_6:10406972-10411829:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7789306640625	2	522.788507	1043.56246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.691	1	19.575	19.075	20.075	-0.11592								0	0	0	0.2489	1	2313	2313		6.7232	0.51738	1		+		43585	15849	25211	25212	53078	53078					0.042422164887511826
SLQKLKHMNL	10	Unmodified	_SLQKLKHMNL_					0	0	0		ENST00000412878.2_1_10:53079678-53079921:+|nuORF	ENST00000412878.2_1_10:53079678-53079921:+|nuORF	ENST00000412878.2_1_10:53079678-53079921:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2158203125	3	404.569147	1210.68561	-0.31459	-0.00012727	-1.4374	-0.00058151	-1.752	-0.00070879	404.56824375187426	28.624	0.77559	28.625	28.351	29.127	0.00046921					42	27	2	0	0	0	0.3179	1	5148	5148		5.7834	0	1	188740			43586	10281	25212	25213	53079	53079					0.08869711825013837
SLQKNGSVVAM	11	Unmodified	_SLQKNGSVVAM_					0	0	0		nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;ENST00000510774.1_1_3:130699433-130714956:+|nuORF	nc|ENSG00000017260|P98194-4|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.28125	2	567.302798	1132.59104	0.30528	0.00017319	-1.3751	-0.0007801	-1.0698	-0.00060691	567.802945188313	58.837	0.46824	58.837	58.5	58.968	0					25	15	3	0	0	0	0.32798	1	14326	14326		7.609	0	1	270760			43587	487	25213	25214	53080	53080					0.030051532830157157
SLQLDCLMK	9	Unmodified	_SLQLDCLMK_					0	0	0		ENST00000509659.5_1_4:88898870-88904045:+|nuORF	ENST00000509659.5_1_4:88898870-88904045:+|nuORF	ENST00000509659.5_1_4:88898870-88904045:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.778564453125	2	525.769745	1049.52494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.51	1	24.51	24.01	25.01	0								0	0	0	0.21009	1	3772	3772		19.257	1.1106	1				43588	11362	25214	25215	53081	53081					0.0021562111660387018
SLQLDKTNG	9	Unmodified	_SLQLDKTNG_					0	0	0			REV__nc|ENSG00000062194|Q86WP2-4|GPBP1	REV__nc|ENSG00000062194|Q86WP2-4|GPBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2591552734375	2	488.258914	974.503274	0.20209	9.867E-05	-0.10687	-5.2178E-05	0.095221	4.6492E-05	488.25884579352015	16.567	1.7113	16.567	16.008	17.719	0					141	59	5	0	0	0	0.32638	1	1635	1635		4.897	0.56777	1	1104200	+		43589	13630	25215	25216	53082	53082					0.01500275683918062
SLQLKEKK	8	Unmodified	_SLQLKEKK_					0	0	0		nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000091656|Q86UP3-3|ZFHX4;ENST00000458716.2_1_8:77616323-77620415:+|nuORF	nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000091656|Q86UP3-3|ZFHX4	nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.30535888671875	2	487.305667	972.596781	-0.138	-6.7249E-05	0.2789	0.00013591	0.1409	6.8662E-05	487.30557579191236	12.329	0.35052	12.261	12.14	12.491	-0.06806					20	11	3	0	0	0	0.42371	1	98	98		14.838	1.7958	1	89731			43590	12703;10713	25216	25217	53083	53083					0.10938619856983678
SLQLKEKK	8	Unmodified	_SLQLKEKK_					0	0	0		nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000091656|Q86UP3-3|ZFHX4;ENST00000458716.2_1_8:77616323-77620415:+|nuORF	nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000091656|Q86UP3-3|ZFHX4	nc|ENSG00000133816|O94851|MICAL2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	487.305667	972.596781	-0.084947	-4.1395E-05	-0.055716	-2.7151E-05	-0.14066	-6.8546E-05	487.3054356220517	12.29	0.36066	12.29	12.194	12.555	0	0.040971	-9.9663E-05	NaN	14.838	19	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106100			43591	12703;10713	25216	25217							0.10938619856983678
SLQLKEKK	8	Unmodified	_SLQLKEKK_					0	0	0		nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000091656|Q86UP3-3|ZFHX4;ENST00000458716.2_1_8:77616323-77620415:+|nuORF	nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000091656|Q86UP3-3|ZFHX4	nc|ENSG00000133816|O94851|MICAL2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	487.305667	972.596781	0.0019119	9.3169E-07	-0.065213	-3.1779E-05	-0.063302	-3.0847E-05	487.30548360175214	12.293	0.34228	12.196	12.094	12.436	-0.096607	-0.053032	-0.00010892	NaN	14.838	19	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110330			43592	12703;10713	25216	25217							0.10938619856983678
SLQLQDIPF	9	Unmodified	_SLQLQDIPF_					0	0	0			REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	REV__nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7772216796875	2	530.787307	1059.56006	0.51361	0.00027262	-0.023588	-1.252E-05	0.49002	0.0002601	530.7865407652959	68.743	1.0334	68.723	68.458	69.492	-0.019157					59	36	3	0	0	0	0.25989	1	17301	17301		14.838	0	1	263710	+		43593	23219	25217	25218	53084	53084					0.03266323240404745
SLQLRKRE	8	Unmodified	_SLQLRKRE_					0	0	0		ENST00000517562.2_1_8:91973043-91983329:-|nuORF	ENST00000517562.2_1_8:91973043-91983329:-|nuORF	ENST00000517562.2_1_8:91973043-91983329:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.808837890625	2	515.311815	1028.60908	0.24651	0.00012703	-0.61771	-0.00031831	-0.3712	-0.00019128	515.3113923102512	24.24	0.819	24.24	23.998	24.817	0					55	27	3	0	0	0	0.34408	1	3843	3843		2.3027	0	1	192040			43594	11438	25218	25219	53085	53085					0.09591656320026232
SLQNIYQKT	9	Unmodified	_SLQNIYQKT_					0	0	0		ENST00000431391.1_1_3:196042974-196043040:-|nuORF	ENST00000431391.1_1_3:196042974-196043040:-|nuORF	ENST00000431391.1_1_3:196042974-196043040:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7971801757812	2	547.795663	1093.57677	0.46742	0.00025605	1.5703	0.0008602	2.0377	0.0011162	547.7969943524992	19.546	0.52448	19.43	19.205	19.729	-0.11592					36	17	4	0	0	0	0.33911	1	2297	2297		2.9952	0.93549	1	72603			43595	10474	25219	25220	53086	53086					0.03372824126358864
SLQNKVSPK	9	Unmodified	_SLQNKVSPK_					0	0	0			REV__ENST00000395867.7_3_10:38120565-38120739:-|nuORF	REV__ENST00000395867.7_3_10:38120565-38120739:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.79302978515625	2	500.792924	999.571294	0.20087	0.00010059	-1.028	-0.00051482	-0.82715	-0.00041423	500.7922918754494	26.082	0.58694	26.082	25.823	26.41	0					50	20	3	0	0	0	0.14786	1	4214	4214		31.268	3.6395	1	633180	+		43596	20645	25220	25221	53087	53087					0.07149145334562945
SLQPPPALLF	10	Unmodified	_SLQPPPALLF_					0	0	0		ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	ENSG00000198723|ENST00000361664|TEX45	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3069458007812	2	541.815867	1081.61718	0.37632	0.0002039	1.1424	0.00061899	1.5188	0.00082289	541.8164282661796	73.415	0.41805	73.415	73.133	73.551	0					22	14	2	0	0	0	0.27772	1	18789	18789		20.454	0	1	156880			43597	8110	25221	25222	53088	53088					0.07963790516782865
SLQQHLVLL	9	Unmodified	_SLQQHLVLL_					0	0	0		nc|ENSG00000160271|Q12967-2|RALGDS	nc|ENSG00000160271|Q12967-2|RALGDS	nc|ENSG00000160271|Q12967-2|RALGDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8192749023438	2	525.818941	1049.62333	0.64414	0.0003387	0.07138	3.7533E-05	0.71552	0.00037623	525.8190275692784	49.213	0.59752	49.213	48.944	49.542	0					49	21	4	0	0	0	0.019896	2	11324	11324;11338		64.236	14.303	1	975830			43598	12790	25222	25223	53089;53090	53089					0.10050308748327552
SLQQHLVLL	9	Unmodified	_SLQQHLVLL_					0	0	0		nc|ENSG00000160271|Q12967-2|RALGDS	nc|ENSG00000160271|Q12967-2|RALGDS	nc|ENSG00000160271|Q12967-2|RALGDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8193359375	2	525.818941	1049.62333	0.43357	0.00022798	0.22634	0.00011901	0.65991	0.000347	525.8190334955975	49.205	0.52666	49.249	48.989	49.515	0.044888					50	18	4	0	0	0	0.019896	1	11341	11341		64.236	14.303	1	949820			43599	12790	25222	25223	53091	53091					0.10050308748327552
SLQQHLVLL	9	Unmodified	_SLQQHLVLL_					0	0	0		nc|ENSG00000160271|Q12967-2|RALGDS	nc|ENSG00000160271|Q12967-2|RALGDS	nc|ENSG00000160271|Q12967-2|RALGDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8192138671875	2	525.818941	1049.62333	0.35439	0.00018635	0.27617	0.00014522	0.63056	0.00033156	525.8191214360419	49.192	0.51113	49.224	48.983	49.494	0.032043					46	17	3	0	0	0	0.019896	2	11315	11315;11320		64.236	11.968	1	1152600			43600	12790	25222	25223	53092;53093	53092					0.10050308748327552
SLQQNIEPK	9	Unmodified	_SLQQNIEPK_					0	0	0			REV__ZNF597|p.C158Kfs*22|1|0.22|ENSG00000167981|chr16:3437211-3437227|TGGTCACACTCAGGACA/-|frameshift_variant	REV__ZNF597|p.C158Kfs*22|1|0.22|ENSG00000167981|chr16:3437211-3437227|TGGTCACACTCAGGACA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7879638671875	2	528.787838	1055.56112	0.70233	0.00037138	-0.46419	-0.00024546	0.23813	0.00012592	528.7874469285434	29.271	0.61854	29.271	28.873	29.492	0					55	22	4	0	0	0	0.020233	2	5239	5193;5239		63.961	16.212	1	444800	+		43601	17427	25223	25224	53094;53095	53095					0.035565376093245504
SLQQNIEPK	9	Unmodified	_SLQQNIEPK_					0	0	0			REV__ZNF597|p.C158Kfs*22|1|0.22|ENSG00000167981|chr16:3437211-3437227|TGGTCACACTCAGGACA/-|frameshift_variant	REV__ZNF597|p.C158Kfs*22|1|0.22|ENSG00000167981|chr16:3437211-3437227|TGGTCACACTCAGGACA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.787841796875	2	528.787838	1055.56112	0.43381	0.00022939	-0.17612	-9.313E-05	0.25769	0.00013626	528.7876564928955	29.179	0.58543	29.191	28.858	29.443	0.012266					45	20	3	0	0	0	0.053988	2	5221	5172;5221		51.415	9.4597	1	423450	+		43602	17427	25223	25224	53096;53097	53097					0.035565376093245504
SLQQNIEPK	9	Unmodified	_SLQQNIEPK_					0	0	0			REV__ZNF597|p.C158Kfs*22|1|0.22|ENSG00000167981|chr16:3437211-3437227|TGGTCACACTCAGGACA/-|frameshift_variant	REV__ZNF597|p.C158Kfs*22|1|0.22|ENSG00000167981|chr16:3437211-3437227|TGGTCACACTCAGGACA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3109130859375	2	528.787838	1055.56112	0.43381	0.00022939	-0.17612	-9.313E-05	0.25769	0.00013626	528.7876564928955	29.179	0.58543	29.191	28.858	29.443	0.012266					45	20	3	0	0	0	0.15943	1	5241	5241		39.95	10.868	1	423450	+		43603	17427	25223	25224	53098	53098					0.035565376093245504
SLQQNIEPK	9	Unmodified	_SLQQNIEPK_					0	0	0			REV__ZNF597|p.C158Kfs*22|1|0.22|ENSG00000167981|chr16:3437211-3437227|TGGTCACACTCAGGACA/-|frameshift_variant	REV__ZNF597|p.C158Kfs*22|1|0.22|ENSG00000167981|chr16:3437211-3437227|TGGTCACACTCAGGACA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7879638671875	2	528.787838	1055.56112	0.3422	0.00018095	-0.0015602	-8.2502E-07	0.34064	0.00018012	528.7876846631032	29.268	0.65379	29.281	28.853	29.507	0.013474					54	23	3	0	0	0	0.05341	2	5226	5178;5226		51.63	11.68	1	424270	+		43604	17427	25223	25224	53099;53100	53100					0.035565376093245504
SLQQNIEPK	9	Unmodified	_SLQQNIEPK_					0	0	0			REV__ZNF597|p.C158Kfs*22|1|0.22|ENSG00000167981|chr16:3437211-3437227|TGGTCACACTCAGGACA/-|frameshift_variant	REV__ZNF597|p.C158Kfs*22|1|0.22|ENSG00000167981|chr16:3437211-3437227|TGGTCACACTCAGGACA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8154296875	2	528.787838	1055.56112	0.3422	0.00018095	-0.0015602	-8.2502E-07	0.34064	0.00018012	528.7876846631032	29.268	0.65379	29.281	28.853	29.507	0.013474					54	23	3	0	0	0	0.17242	1	5146	5146		36.127	1.7253	1	424270	+		43605	17427	25223	25224	53101	53101					0.035565376093245504
SLQQSDFEYK	10	Unmodified	_SLQQSDFEYK_					0	0	0		nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;NEB|p.E6206Gfs*23|1|0.69|ENSG00000183091|chr2:151505500-151505500|T/-|frameshift_variant;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-4|NEB	nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.21563720703125	3	415.531304	1243.57208	0.055153	2.2918E-05	-4.2342	-0.0017595	-4.1791	-0.0017365	415.529676621043	22.783	0.40887	22.738	22.438	22.847	-0.044867					18	13	2	0	0	0	0.31889	1	3199	3199		3.3196	1.5774	1	29270			43606	7345	25224	25225	53102	53102					-0.039961048070381366
SLQQVRQQLK	10	Unmodified	_SLQQVRQQLK_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.9103698730469	3	409.910449	1226.70952	-0.14313	-5.8669E-05	-0.23579	-9.6653E-05	-0.37892	-0.00015532	409.9104460188872	26.703	0.96837	26.703	26.44	27.408	0					98	33	4	0	0	0	0.25441	2	4458	4405;4458		25.997	14.48	1	1321300			43607	2643	25225	25226	53103;53104	53104					0.10523268583028766
SLQQVRQQLK	10	Unmodified	_SLQQVRQQLK_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.3618774414062	2	614.362036	1226.70952	0.13829	8.4962E-05	-0.19545	-0.00012008	-0.057159	-3.5116E-05	614.3616836048075	26.681	0.5926	26.681	26.499	27.091	0					46	20	3	0	0	0	0.0051187	1	4432	4432		84.522	56.893	1	299160			43608	2643	25225	25226	53105	53105					0.10523268583028766
SLQQVRQQLK	10	Unmodified	_SLQQVRQQLK_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9103698730469	3	409.910449	1226.70952	0.049174	2.0157E-05	-0.46642	-0.00019119	-0.41724	-0.00017103	409.9103505132557	26.717	0.90349	26.678	26.37	27.274	-0.038671					99	31	4	0	0	0	0.21811	1	4459	4459		30.431	18.8	1	1517800			43609	2643	25225	25226	53106	53106					0.10523268583028766
SLQQVRQQLK	10	Unmodified	_SLQQVRQQLK_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.9105529785156	3	409.910449	1226.70952	0.23722	9.7241E-05	-1.1418	-0.00046802	-0.90453	-0.00037078	409.910283900299	26.753	1.044	26.741	26.483	27.527	-0.011562					163	36	9	0	0	0	0.25441	2	4429	4429;4476		25.997	10.459	1	1522900			43610	2643	25225	25226	53107;53108	53107					0.10523268583028766
SLQQVRQQLK	10	Unmodified	_SLQQVRQQLK_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	614.362036	1226.70952	0.15766	9.6858E-05	-0.23566	-0.00014478	-0.078004	-4.7923E-05	614.3616390216323	26.72	0.65353	26.681	26.37	27.024	-0.038671	-0.0237	2.5506E-05	NaN	84.522	52	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380180			43611	2643	25225	25226							0.10523268583028766
SLQQVRQQLK	10	Unmodified	_SLQQVRQQLK_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	614.362036	1226.70952	0.38341	0.00023555	-0.34289	-0.00021066	0.04052	2.4894E-05	614.361677772583	26.764	0.64771	26.753	26.513	27.16	-0.011562	0.047848	-0.00010625	NaN	84.522	53	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387500			43612	2643	25225	25226							0.10523268583028766
SLQRKRIV	8	Unmodified	_SLQRKRIV_					0	0	0		ENST00000353205.5_1_6:41062183-41065126:+|nuORF	ENST00000353205.5_1_6:41062183-41065126:+|nuORF	ENST00000353205.5_1_6:41062183-41065126:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2646789550781	2	500.324725	998.634898	0.098579	4.9322E-05	-1.4791	-0.00074003	-1.3805	-0.00069071	500.82426616796056	30.509	0.16218	30.536	30.476	30.638	0.027157					7	5	2	0	0	0	0.34247	1	5600	5600		8.5933	0	1	65275			43613	9584	25226	25227	53109	53109					0.1355255056231499
SLQRKVRI	8	Unmodified	_SLQRKVRI_					0	0	0			REV__L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|42|1|sense	REV__L1PA6_dup5640|chr19:20482443-20488575:+|1.1762487912993795|0.3545951168651645|1.73|529.0|42|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2647399902344	2	500.324725	998.634898	0.39475	0.0001975	0.95592	0.00047827	1.3507	0.00067577	500.3267847312761	30.569	0.11489	30.597	30.523	30.638	0.027946					5	3	2	0	0	0	0.34092	1	5602	5602		8.5933	0	1	38558	+		43614	22821	25227	25228	53110	53110					0.1355255056232636
SLQRTVTIK	9	Unmodified	_SLQRTVTIK_					0	0	0			REV__nc|ENSG00000100599|Q8TB24-4|RIN3	REV__nc|ENSG00000100599|Q8TB24-4|RIN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.279541015625	2	523.321848	1044.62914	0.46231	0.00024194	-0.47149	-0.00024674	-0.0091707	-4.7992E-06	523.3212280224863	29.375	0.34147	29.388	29.218	29.56	0.012264					19	11	2	0	0	0	0.24848	1	5242	5242		13.906	2.2658	1	92636	+		43615	14211	25228	25229	53111	53111					0.10861407259994849
SLQSFFKSP	9	Unmodified	_SLQSFFKSP_					0	0	0			REV__ENSG00000100385|ENST00000216223|IL2RB	REV__ENSG00000100385|ENST00000216223|IL2RB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2846069335938	2	520.7742	1039.53385	0.54593	0.00028431	-0.51087	-0.00026605	0.035066	1.8261E-05	520.7738374480667	66.529	0.59216	66.529	66.317	66.909	0					43	20	4	0	0	0	0.2422	1	16728	16728		14.405	0	1	600050	+		43616	14190	25229	25230	53112	53112					0.01566054068939593
SLQSVGTKPL	10	Unmodified	_SLQSVGTKPL_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.28466796875	2	515.300581	1028.58661	-0.069008	-3.556E-05	1.0149	0.00052297	0.94587	0.00048741	515.3011006460671	18.29	0.31048	18.232	18.031	18.341	-0.058172					16	10	2	0	0	0	0.40403	1	1917	1917		2.7352	0.43246	1	35862	+		43617	14382	25230	25231	53113	53113					0.07346012131756652
SLQTQGSLEEE	11	Unmodified	_SLQTQGSLEEE_					0	0	0		ENST00000533912.1_1_6:131191025-131199321:-|nuORF	ENST00000533912.1_1_6:131191025-131199321:-|nuORF	ENST00000533912.1_1_6:131191025-131199321:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.526123046875	3	407.526218	1219.55683	0.098917	4.0311E-05	-0.6357	-0.00025906	-0.53678	-0.00021875	407.52599208676185	53.517	0.92932	53.517	53.311	54.24	0					127	34	6	0	0	0	0.39244	1	12690	12690		12.228	2.9838	1	3593900			43618	11654	25231	25232	53114	53114					-0.04417016394904749
SLQTRDPESVH	11	Unmodified	_SLQTRDPESVH_					0	0	0			REV__ENST00000580667.5_1_17:37264974-37309186:-|nuORF	REV__ENST00000580667.5_1_17:37264974-37309186:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.55810546875	3	423.545836	1267.61568	-0.3855	-0.00016328	1.1677	0.00049457	0.7822	0.0003313	423.54641758911566	13.269	0.41909	13.269	13.09	13.509	0					19	14	2	0	0	0	0.46277	1	425	425		2.6312	1.5215	1	23849	+		43619	16939	25232	25233	53115	53115					-0.007424953099189224
SLQVALVVK	9	Unmodified	_SLQVALVVK_					0	0	0		ENST00000316059.6_1_11:58352348-58378460:+|nuORF	ENST00000316059.6_1_11:58352348-58378460:+|nuORF	ENST00000316059.6_1_11:58352348-58378460:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.8105773925781	2	478.810585	955.606617	0.30625	0.00014664	0.053307	2.5524E-05	0.35956	0.00017216	478.81050580282675	49.198	0.67982	49.198	48.97	49.65	0					50	24	3	0	0	0	0.018042	1	11326	11326		67.081	28.905	1	568020			43620	9355	25233	25234	53116	53116					0.12703807862374106
SLQVALVVK	9	Unmodified	_SLQVALVVK_					0	0	0		ENST00000316059.6_1_11:58352348-58378460:+|nuORF	ENST00000316059.6_1_11:58352348-58378460:+|nuORF	ENST00000316059.6_1_11:58352348-58378460:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	478.810585	955.606617	0.21804	0.0001044	0.065153	3.1196E-05	0.28319	0.0001356	478.81053128316404	49.229	0.65309	49.274	49.016	49.669	0.044891	0.038327	-3.1681E-06	NaN	67.081	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455930			43621	9355	25233	25234							0.12703807862374106
SLQVALVVK	9	Unmodified	_SLQVALVVK_					0	0	0		ENST00000316059.6_1_11:58352348-58378460:+|nuORF	ENST00000316059.6_1_11:58352348-58378460:+|nuORF	ENST00000316059.6_1_11:58352348-58378460:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	478.810585	955.606617	0.11409	5.4625E-05	0.075021	3.5921E-05	0.18911	9.0546E-05	478.81058094244617	49.203	0.6978	49.235	48.983	49.681	0.032047	-0.00087496	6.2825E-06	NaN	67.081	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397530			43622	9355	25233	25234							0.12703807862374106
SLRAPQEF	8	Unmodified	_SLRAPQEF_					0	0	0		nc|ENSG00000159322|Q9BRR6-4|ADPGK;nc|ENSG00000159322|Q9BRR6-3|ADPGK;ENST00000562621.1_1_15:73044684-73048205:-|nuORF;ENST00000569534.5_1_15:73044684-73076051:-|nuORF;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK	nc|ENSG00000159322|Q9BRR6-4|ADPGK	nc|ENSG00000159322|Q9BRR6-4|ADPGK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7896728515625	2	474.250892	946.48723	0.34736	0.00016474	-0.34538	-0.0001638	0.0019758	9.3703E-07	474.25055032895307	40.035	0.52848	40.134	39.977	40.505	0.099407					36	18	3	0	0	0	0.34185	1	8457	8457		5.7604	0	1	306690			43623	5400	25234	25235	53117	53117					0.011846142376612079
SLRAPQEF	8	Unmodified	_SLRAPQEF_					0	0	0		nc|ENSG00000159322|Q9BRR6-4|ADPGK;nc|ENSG00000159322|Q9BRR6-3|ADPGK;ENST00000562621.1_1_15:73044684-73048205:-|nuORF;ENST00000569534.5_1_15:73044684-73076051:-|nuORF;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK	nc|ENSG00000159322|Q9BRR6-4|ADPGK	nc|ENSG00000159322|Q9BRR6-4|ADPGK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	474.250892	946.48723	0.26003	0.00012332	-0.25666	-0.00012172	0.0033738	1.6E-06	474.25072435169136	40.325	0.44606	40.325	40.104	40.55	0	0.096925	0.00016975	NaN	2.5775	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204750			43624	5400	25234	25235							0.011846142376612079
SLRARPAGK	9	Unmodified	_SLRARPAGK_					0	0	0			REV__ENST00000370803.7_1_X:133507308-133511628:+|nuORF	REV__ENST00000370803.7_1_X:133507308-133511628:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.9747619628906	2	478.293425	954.572297	0.30841	0.00014751	-0.50835	-0.00024314	-0.19995	-9.5633E-05	478.2933462108885	38.308	0.33298	38.399	38.209	38.542	0.090881					17	11	2	0	0	0	0.25066	1	7922	7922		11.64	11.64	1	115360	+		43625	20391	25235	25236	53118	53118					0.09319404494124228
SLRCEEPLHR	10	Unmodified	_SLRCEEPLHR_					0	0	0			REV__ENSG00000162944|ENST00000295049|RFTN2	REV__ENSG00000162944|ENST00000295049|RFTN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.8800964355469	3	413.880273	1238.61899	0.076342	3.1597E-05	-0.29869	-0.00012362	-0.22235	-9.2027E-05	413.880194584176	15.516	1.0215	15.406	15.093	16.114	-0.10982					78	34	4	0	0	0	0.37823	1	1093	1093		7.4771	0.37534	1	410600	+		43626	17023	25236	25237	53119	53119					0.0092247626309927
SLREKEKQ	8	Unmodified	_SLREKEKQ_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3003845214844	2	509.288005	1016.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.894	1	32.95	32.45	33.45	0.055309								0	0	0	0.34229	1	6320	6320		18.135	0	1		+		43627	17852	25237	25238	53120	53120					0.05383957329183886
SLRELLRLPL	10	Unmodified	_SLRELLRLPL_					0	0	0		nc|ENSG00000171763|Q9BVQ7-3|AFG2B;nc|ENSG00000171763|Q9BVQ7-2|AFG2B;ENSG00000171763|ENST00000305560|SPATA5L1	nc|ENSG00000171763|Q9BVQ7-3|AFG2B	nc|ENSG00000171763|Q9BVQ7-3|AFG2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.1834411621094	3	403.92744	1208.76049	0.044009	1.7777E-05	2.558	0.0010333	2.602	0.001051	404.2628069510325	44.953	0.61735	45.028	44.723	45.34	0.075047					36	22	2	0	0	0	0.32051	1	9957	9957		3.8763	0	1	186120			43628	6572	25238	25239	53121	53121					0.16446217627890292
SLRESYIF	8	Unmodified	_SLRESYIF_					0	0	0		nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.8206481933594	2	507.766374	1013.5182	0.11157	5.6653E-05	-0.16517	-8.3866E-05	-0.053593	-2.7213E-05	507.76628389815113	60.36	0.29123	60.36	60.15	60.441	0					19	10	2	0	0	0	0.32435	1	14698	14698		16.942	0	1	413690			43629	3841	25239	25240	53122	53122					0.011977675518892283
SLRFRRNRL	9	Unmodified	_SLRFRRNRL_					0	0	0			REV__ENST00000374273.7_1_20:34207666-34208825:+|nuORF	REV__ENST00000374273.7_1_20:34207666-34208825:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.2433166503906	3	406.582779	1216.72651	0.15793	6.4213E-05	-0.6711	-0.00027286	-0.51317	-0.00020864	406.58249834492943	53.838	0.40194	53.838	53.648	54.05	0					20	14	2	0	0	0	0.26127	1	12713	12713		2.7352	1.4056	1	183640	+		43630	20459	25240	25241	53123	53123					0.12681233979515127
SLRFYQLIL	9	Unmodified	_SLRFYQLIL_					0	0	0		nc|ENSG00000150510|Q86V42-3|FAM124A;ENSG00000150510|ENST00000322475|FAM124A;nc|ENSG00000150510|Q86V42-2|FAM124A	nc|ENSG00000150510|Q86V42-3|FAM124A	nc|ENSG00000150510|Q86V42-3|FAM124A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.830810546875	2	576.842416	1151.67028	0.35602	0.00020537	-0.40432	-0.00023323	-0.048297	-2.786E-05	576.8421091763353	45.354	0.39893	45.419	45.224	45.623	0.065048					18	14	2	0	0	0	0.2451	1	10092	10092		15.847	6.4641	1	277520			43631	4913	25241	25242	53124	53124					0.10051168299469282
SLRGRQLDEQR	11	Unmodified	_SLRGRQLDEQR_					0	0	0			REV__nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	REV__nc|ENSG00000155256|Q5T4F4-4|ZFYVE27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.74969482421875	3	453.248013	1356.72221	0.15673	7.1036E-05	0.73392	0.00033265	0.89065	0.00040368	453.24889920061526	24.619	0.40422	24.563	24.315	24.719	-0.055931					23	13	2	0	0	0	0.33236	1	3737	3737		2.4348	0	1	1013900	+		43632	16693	25242	25243	53125	53125					0.058116799752724546
SLRIWALVS	9	Unmodified	_SLRIWALVS_					0	0	0		nc|nan|Q5T0Z8-4|C6orf132	nc|nan|Q5T0Z8-4|C6orf132	nc|nan|Q5T0Z8-4|C6orf132	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2832641601562	2	522.813659	1043.61277	0.41285	0.00021584	3.4083	0.0017819	3.8211	0.0019977	523.3173528028776	63.065	0.62041	63.057	62.731	63.351	-0.0085526					57	22	4	0	0	0	0.24289	1	15545	15545		13.042	0	1	637010			43633	13028	25243	25244	53126	53126					0.09270326093860604
SLRKLWAF	8	Unmodified	_SLRKLWAF_					0	0	0		ENST00000468221.5_1_2:219248908-219249148:+|nuORF;SLC11A1|p.F199Lfs*5|1|0.35|ENSG00000018280|chr2:218387584-218387584|T/-|frameshift_variant;ENST00000492413.5_1_2:219247091-219251606:+|nuORF;ENST00000469449.1_1_2:219248824-219251606:+|nuORF;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;ENSG00000018280|ENST00000233202|SLC11A1	ENST00000468221.5_1_2:219248908-219249148:+|nuORF	ENST00000468221.5_1_2:219248908-219249148:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.8138427734375	2	510.803094	1019.59164	0.60784	0.00031049	0.15964	8.1545E-05	0.76748	0.00039203	510.80343371244317	50.069	0.42173	50.09	49.939	50.361	0.020691					22	15	2	0	0	0	0.42446	1	11654	11654		14.582	2.0501	1	322050			43634	493	25244	25245	53127	53127					0.08262360785033707
SLRKPLQW	8	Unmodified	_SLRKPLQW_					0	0	0			REV__LTR19B_dup80|chr6:106743802-106744351:-|4.284117748742692|0.4191254365420057|3.35|537.0|27|2|anti-sense	REV__LTR19B_dup80|chr6:106743802-106744351:-|4.284117748742692|0.4191254365420057|3.35|537.0|27|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7380981445312	2	514.306001	1026.59745	0.10795	5.5519E-05	0.22728	0.00011689	0.33523	0.00017241	514.3059904107656	41.093	0.48475	41.093	40.847	41.331	0					31	17	2	0	0	0	0.34218	1	8750	8750		0	0	1	314210	+		43635	22841	25245	25246	53128	53128					0.0852145929670769
SLRKTDSK	8	Unmodified	_SLRKTDSK_					0	0	0		nc|ENSG00000157680|O75912|DGKI;ENSG00000157680|ENST00000614521|DGKI;ENST00000477835.5_1_7:137075968-137139597:-|nuORF	nc|ENSG00000157680|O75912|DGKI	nc|ENSG00000157680|O75912|DGKI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.25238037109375	2	467.769448	933.524344	-0.29319	-0.00013715	-0.74614	-0.00034902	-1.0393	-0.00048617	467.7695672204531	13.993	0.20178	13.888	13.79	13.991	-0.10466					13	6	3	0	0	0	0.34294	1	622	622		7.2892	1.5288	1	44906			43636	5321	25246	25247	53129	53129					0.05492285783418538
SLRKTDSK	8	Unmodified	_SLRKTDSK_					0	0	0		nc|ENSG00000157680|O75912|DGKI;ENSG00000157680|ENST00000614521|DGKI;ENST00000477835.5_1_7:137075968-137139597:-|nuORF	nc|ENSG00000157680|O75912|DGKI	nc|ENSG00000157680|O75912|DGKI	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	467.769448	933.524344	-0.2964	-0.00013865	-0.65623	-0.00030697	-0.95264	-0.00044562	467.76931997623296	13.904	0.19847	13.904	13.794	13.992	0	0.013387	-0.00024751	NaN	7.2892	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33108			43637	5321	25246	25247							0.05492285783418538
SLRKTDSK	8	Unmodified	_SLRKTDSK_					0	0	0		nc|ENSG00000157680|O75912|DGKI;ENSG00000157680|ENST00000614521|DGKI;ENST00000477835.5_1_7:137075968-137139597:-|nuORF	nc|ENSG00000157680|O75912|DGKI	nc|ENSG00000157680|O75912|DGKI	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	467.769448	933.524344	-0.14805	-6.9252E-05	0.29238	0.00013677	0.14433	6.7513E-05	467.76963661431256	13.947	0.17476	13.881	13.802	13.977	-0.066068	-0.010472	0.00063996	NaN	7.2892	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48806			43638	5321	25246	25247							0.05492285783418538
SLRKTRPLV	9	Unmodified	_SLRKTRPLV_					0	0	0		ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.3447875976562	2	535.345658	1068.67676	0.48708	0.00026075	-3.9341	-0.0021061	-3.447	-0.0018453	535.3445472173779	36.203	0.91119	36.285	35.874	36.785	0.082355					92	32	4	0	0	0	0.33018	1	7337	7337		4.3292	0	1	1012500			43639	5022	25247	25248	53130	53130					0.14517106250809775
SLRLARQSGG	10	Unmodified	_SLRLARQSGG_					0	0	0			REV__nc|ENSG00000121853|Q92847-2|GHSR	REV__nc|ENSG00000121853|Q92847-2|GHSR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7899169921875	2	522.799072	1043.58359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.978	1	55.041	54.541	55.541	0.063202								0	0	0	0.32869	1	13094	13094		23.79	4.3508	1		+		43640	22972	25248	25249	53131	53131					0.06354181797610181
SLRLDPNF	8	Unmodified	_SLRLDPNF_					0	0	0		nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;FANCD2|p.H550Sfs*5|1|0.06|ENSG00000144554|chr3:10052488-10052489|-/T|frameshift_variant	nc|ENSG00000144554|Q9BXW9-3|FANCD2	nc|ENSG00000144554|Q9BXW9-3|FANCD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.2717590332031	2	481.258717	960.50288	0.31018	0.00014928	0.5918	0.00028481	0.90198	0.00043409	481.2589115430787	30.325	0.81781	30.352	29.992	30.81	0.027946					49	28	3	0	0	0	0.45169	1	5599	5599		5.2307	0	1	90965			43641	4592	25249	25250	53132	53132					0.02104900754704886
SLRLDPNF	8	Unmodified	_SLRLDPNF_					0	0	0		nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;FANCD2|p.H550Sfs*5|1|0.06|ENSG00000144554|chr3:10052488-10052489|-/T|frameshift_variant	nc|ENSG00000144554|Q9BXW9-3|FANCD2	nc|ENSG00000144554|Q9BXW9-3|FANCD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	481.258717	960.50288	-0.002717	-1.3076E-06	0.9111	0.00043847	0.90838	0.00043717	481.25906931434025	30.306	0.75862	30.333	30.052	30.81	0.027157	-0.0098934	0.00016804	NaN	5.2307	47	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114910			43642	4592	25249	25250							0.02104900754704886
SLRLFRKFF	9	Unmodified	_SLRLFRKFF_					0	0	0		chr6:132684505-132686599|239|12.18|0.61|4.32|-|0|TE_info:HAL1,HAL1_dup9460,L1,LINE,donor,+,132686599,132687118|VNN1,None|2	chr6:132684505-132686599|239|12.18|0.61|4.32|-|0|TE_info:HAL1,HAL1_dup9460,L1,LINE,donor,+,132686599,132687118|VNN1,None|2	chr6:132684505-132686599|239|12.18|0.61|4.32|-|0|TE_info:HAL1,HAL1_dup9460,L1,LINE,donor,+,132686599,132687118|VNN1,None|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.5834655761719	3	405.244992	1212.71315	-0.1859	-7.5334E-05	3.8591	0.0015639	3.6732	0.0014885	405.24618946266594	19.762	0.58427	19.762	19.431	20.016	0					29	20	2	0	0	0	0.26117	1	2325	2325		1.1933	0	1	39892			43643	170	25250	25251	53133	53133					0.1152998314753404
SLRLFRKFF	9	Unmodified	_SLRLFRKFF_					0	0	0		chr6:132684505-132686599|239|12.18|0.61|4.32|-|0|TE_info:HAL1,HAL1_dup9460,L1,LINE,donor,+,132686599,132687118|VNN1,None|2	chr6:132684505-132686599|239|12.18|0.61|4.32|-|0|TE_info:HAL1,HAL1_dup9460,L1,LINE,donor,+,132686599,132687118|VNN1,None|2	chr6:132684505-132686599|239|12.18|0.61|4.32|-|0|TE_info:HAL1,HAL1_dup9460,L1,LINE,donor,+,132686599,132687118|VNN1,None|2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.244992	1212.71315	0.1152	4.6683E-05	3.2745	0.001327	3.3897	0.0013737	405.24614703203787	20.026	0.44119	19.971	19.678	20.119	-0.055693	0.070974	-0.00036602	NaN	0.26902	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42451			43644	170	25250	25251							0.1152998314753404
SLRLIWNR	8	Unmodified	_SLRLIWNR_					0	0	0		ENST00000446344.3_1_16:87733890-87734520:-|nuORF	ENST00000446344.3_1_16:87733890-87734520:-|nuORF	ENST00000446344.3_1_16:87733890-87734520:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3154907226562	2	529.3169	1056.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.86	1	117.84	117.34	118.34	-0.024147								0	0	0	0.37778	1	30491	30491		2.0598	0	1				43645	10593	25251	25252	53134	53134					0.09320264045254589
SLRLKPRT	8	Unmodified	_SLRLKPRT_					0	0	0		nc|ENSG00000117013|P56696-2|KCNQ4;ENSG00000117013|ENST00000347132|KCNQ4	nc|ENSG00000117013|P56696-2|KCNQ4	nc|ENSG00000117013|P56696-2|KCNQ4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.29071044921875	2	485.811451	969.608348	-0.10576	-5.1379E-05	-0.36255	-0.00017613	-0.46831	-0.00022751	485.8111096892833	12.747	0.23313	12.747	12.582	12.815	0					10	7	2	0	0	0	0.34438	1	203	203		0.6015	0	1	10906			43646	2770	25252	25253	53135	53135					0.12232861670975126
SLRLRYERR	9	Unmodified	_SLRLRYERR_					0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.9035339355469	3	416.914305	1247.72109	0.45313	0.00018892	-1.3948	-0.00058151	-0.94167	-0.0003926	416.9135438903637	20.242	0.41053	20.189	19.819	20.229	-0.05291					19	14	2	0	0	0	0.2615	1	2441	2441		2.4985	0	1	119060	+		43647	21195	25253	25254	53136	53136					0.10713510396999482
SLRLVTRNI	9	Unmodified	_SLRLVTRNI_					0	0	0			REV__ENSG00000137936|ENST00000260502|BCAR3	REV__ENSG00000137936|ENST00000260502|BCAR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2827758789062	2	536.33529	1070.65603	0.33785	0.0001812	-1.1491	-0.00061632	-0.81128	-0.00043512	536.334516581913	27.308	0.80978	27.308	26.953	27.763	0					46	27	2	0	0	0	0.25066	1	4702	4702		7.2892	0	1	284210	+		43648	15892	25254	25255	53137	53137					0.12352515871180003
SLRLVTRNI	9	Unmodified	_SLRLVTRNI_					0	0	0			REV__ENSG00000137936|ENST00000260502|BCAR3	REV__ENSG00000137936|ENST00000260502|BCAR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2827758789062	2	536.33529	1070.65603	0.31227	0.00016748	-1.2649	-0.00067839	-0.95259	-0.00051091	536.3345541859301	27.306	1.1355	27.295	26.904	28.039	-0.011562					62	39	2	0	0	0	0.25066	1	4710	4710		3.9444	0	1	244060	+		43649	15892	25254	25255	53138	53138					0.12352515871180003
SLRMYHRFL	9	Unmodified	_SLRMYHRFL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5259704589844	3	408.22197	1221.64408	-0.066427	-2.7117E-05	0.79498	0.00032453	0.72856	0.00029741	408.2224477621213	53.616	0.67659	53.672	53.509	54.185	0.056259					33	25	2	0	0	0	0.25346	1	12670	12670		4.1895	0	1	216190			43650	4063	25255	25256	53139	53139					0.042125758563315685
SLRPILNTL	9	Unmodified	_SLRPILNTL_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8092041015625	2	513.818941	1025.62333	0.28628	0.0001471	-0.090677	-4.6591E-05	0.1956	0.0001005	513.8187835383155	44.388	0.49471	44.463	44.285	44.78	0.075047					36	17	3	0	0	0	0.074552	1	9840	9840		43.772	1.8168	1	261540			43651	5717	25256	25257	53140	53140					0.11154308748336916
SLRPQVSSI	9	Unmodified	_SLRPQVSSI_					0	0	0		nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7861022949219	2	493.785099	985.555644	1.0147	0.00050105	0.31386	0.00015498	1.3286	0.00065603	493.7853056239177	33.83	0.44543	33.896	33.704	34.149	0.06636					33	15	3	0	0	0	0.11201	1	6602	6602		36.506	4.4687	1	270430			43652	3740	25257	25258	53141	53141					0.06228858817530636
SLRPQVSSI	9	Unmodified	_SLRPQVSSI_					0	0	0		nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.785099	985.555644	0.75891	0.00037474	1.7592	0.00086866	2.5181	0.0012434	493.7861718210596	33.978	0.82101	33.978	33.456	34.277	0	0.064033	0.0011193	NaN	36.506	39	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238630			43653	3740	25257	25258							0.06228858817530636
SLRPQVSSI	9	Unmodified	_SLRPQVSSI_					0	0	0		nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.785099	985.555644	0.21112	0.00010425	2.2308	0.0011015	2.4419	0.0012058	493.7864234283571	33.802	0.60392	33.869	33.495	34.099	0.066704	-0.045612	0.0015851	NaN	36.506	39	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268940			43654	3740	25257	25258							0.06228858817530636
SLRPYDFHFL	10	Unmodified	_SLRPYDFHFL_					0	0	0			REV__nc|ENSG00000197136|Q9H6A9-3|PCNX3	REV__nc|ENSG00000197136|Q9H6A9-3|PCNX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.5946044921875	3	432.224146	1293.65061	-0.32172	-0.00013905	-0.99259	-0.00042902	-1.3143	-0.00056808	432.22366515232636	25.597	0.91276	25.541	24.972	25.885	-0.055931					51	31	4	0	0	0	0.31942	1	3945	3945		1.7423	0	1	266940	+		43655	18712	25258	25259	53142	53142					0.015527922886803935
SLRQALREMK	10	Unmodified	_SLRQALREMK_					0	0	0		nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5787048339844	3	411.236168	1230.68668	-0.14703	-6.0464E-05	4.2056	0.0017295	4.0586	0.001669	411.2378559790387	29.933	0.69593	29.947	29.684	30.38	0.013475					32	20	3	0	0	0	0.34325	1	5412	5412		8.4443	0	1	119780			43656	5277	25259	25260	53143	53143					0.08055926193901541
SLRQDSVVP	9	Unmodified	_SLRQDSVVP_					0	0	0			REV__ENST00000279907.11_2_12:100536385-100536592:-|nuORF	REV__ENST00000279907.11_2_12:100536385-100536592:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.28265380859375	2	500.774731	999.534909	0.20945	0.00010489	-0.10397	-5.2067E-05	0.10548	5.2819E-05	500.77460758040417	25.654	0.43283	25.654	25.413	25.846	0					39	14	4	0	0	0	0.23784	1	4116	4116		19.257	6.2145	1	222310	+		43657	19705	25260	25261	53144	53144					0.035122684378507074
SLRQDSVVP	9	Unmodified	_SLRQDSVVP_					0	0	0			REV__ENST00000279907.11_2_12:100536385-100536592:-|nuORF	REV__ENST00000279907.11_2_12:100536385-100536592:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2828063964844	2	500.774731	999.534909	0.059522	2.9807E-05	0.053385	2.6734E-05	0.11291	5.6541E-05	500.7747854638042	25.678	0.36704	25.631	25.374	25.741	-0.04678					34	12	4	0	0	0	0.23784	1	4107	4107		19.257	2.3147	1	230820	+		43658	19705	25260	25261	53145	53145					0.035122684378507074
SLRQILRHKRK	11	Unmodified	_SLRQILRHKRK_					0	0	0		ENST00000537025.6_1_17:66040173-66040476:+|nuORF	ENST00000537025.6_1_17:66040173-66040476:+|nuORF	ENST00000537025.6_1_17:66040173-66040476:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7794189453125	3	478.975788	1433.90553	-0.051864	-2.4841E-05	-2.3256	-0.0011139	-2.3775	-0.0011388	478.9749079807982	42.246	0.95596	42.246	42.193	43.149	0					44	34	2	0	0	0	0.33296	1	9326	9326		2.6312	1.4164	1	477310			43659	11686	25261	25262	53146	53146					0.20593698547577333
SLRRATLWIP	10	Unmodified	_SLRRATLWIP_					0	0	0		nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.55670166015625	3	404.911902	1211.71388	-0.34226	-0.00013858	-0.3491	-0.00014136	-0.69136	-0.00027994	405.24639759600984	22.786	0.58488	22.698	22.461	23.046	-0.087608					45	20	3	0	0	0	0.31994	1	3319	3319		5.4027	0.35519	1	39394			43660	12719	25262	25263	53147	53147					0.11648777796608556
SLRREPIS	8	Unmodified	_SLRREPIS_					0	0	0			REV__ENST00000199764.6_1_19:42259386-42260556:+|nuORF	REV__ENST00000199764.6_1_19:42259386-42260556:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2773742675781	2	479.277441	956.540328	0.42622	0.00020428	-0.33949	-0.00016271	0.086726	4.1566E-05	479.2770710212292	77.219	2.5652	77.219	76.902	79.467	0					218	98	3	0	0	0	0.44389	1	19850	19850		7.9102	0.3012	1	907390	+		43661	19395	25263	25264	53148	53148					0.06031992020314192
SLRRLLVPVC	10	Unmodified	_SLRRLLVPVC_					0	0	0		ENST00000594496.5_1_19:6414884-6415031:-|nuORF	ENST00000594496.5_1_19:6414884-6415031:-|nuORF	ENST00000594496.5_1_19:6414884-6415031:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7945556640625	2	578.355168	1154.69578	0.39791	0.00023014	-0.24274	-0.00014039	0.15518	8.9748E-05	578.3550570027038	45.337	0.81514	45.337	44.771	45.586	0					37	29	2	0	0	0	0.318	1	10184	10184		7.2892	7.2892	1	169700			43662	12215	25264	25265	53149	53149					0.12462319550263601
SLRRLLVPVC	10	Unmodified	_SLRRLLVPVC_					0	0	0		ENST00000594496.5_1_19:6414884-6415031:-|nuORF	ENST00000594496.5_1_19:6414884-6415031:-|nuORF	ENST00000594496.5_1_19:6414884-6415031:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.7948608398438	2	578.355168	1154.69578	0.5377	0.00031098	-0.47367	-0.00027395	0.064029	3.7032E-05	578.3548953608505	45.234	0.42037	45.303	45.093	45.514	0.068569					22	14	2	0	0	0	0.318	1	10127	10127		7.2892	7.2892	1	247340			43663	12215	25264	25265	53150	53150					0.12462319550263601
SLRRRLLE	8	Unmodified	_SLRRRLLE_					0	0	0		AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1	AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant	AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2841186523438	2	521.827632	1041.64071	0.22042	0.00011502	-0.39368	-0.00020543	-0.17326	-9.0411E-05	522.3285478158163	76.437	0.89851	76.491	76.189	77.088	0.053421					96	31	5	0	0	0	0.34218	1	19853	19853		9.3474	0	1	1750600			43664	41	25265	25266	53151	53151					0.12155649073974928
SLRRRLLE	8	Unmodified	_SLRRRLLE_					0	0	0		AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1	AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant	AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.827632	1041.64071	0.40606	0.00021189	-0.66196	-0.00034543	-0.25589	-0.00013353	522.3283872868343	76.504	0.78395	76.504	76.252	77.036	0	-0.0033694	-4.5086E-05	NaN	9.3474	86	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1637100			43665	41	25265	25266							0.12155649073974928
SLRRRLLE	8	Unmodified	_SLRRRLLE_					0	0	0		AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1	AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant	AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	521.827632	1041.64071	0.55711	0.00029072	-0.78382	-0.00040902	-0.22671	-0.0001183	522.3284080531328	76.56	0.80535	76.528	76.24	77.045	-0.031487	0.020347	-0.00017227	NaN	9.3474	90	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1716000			43666	41	25265	25266							0.12155649073974928
SLRSTDEED	9	Unmodified	_SLRSTDEED_					0	0	0		ENSG00000188037|ENST00000343257|CLCN1	ENSG00000188037|ENST00000343257|CLCN1	ENSG00000188037|ENST00000343257|CLCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7684326171875	2	526.23055	1050.44655	0.64137	0.00033751	-2.4513	-0.00129	-1.8099	-0.00095245	526.2292178859863	26.53	0.48292	26.507	26.328	26.811	-0.022236					21	16	2	0	0	0	0.25622	1	4346	4346		7.2892	7.2892	1	48684			43667	7727	25266	25267	53152	53152					-0.07665816663279656
SLRTAAEL	8	Unmodified	_SLRTAAEL_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.96075439453125	2	430.745442	859.476331	0.025409	1.0945E-05	-0.12458	-5.3663E-05	-0.099173	-4.2719E-05	430.74544636326704	36.14	0.32441	36.14	35.932	36.256	0					18	11	2	0	0	0	0.34218	1	7257	7257		9.3474	0	1	115000			43668	1205	25267	25268	53153	53153					0.04097211863370376
SLRTAAEL	8	Unmodified	_SLRTAAEL_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	430.745442	859.476331	0.13665	5.8863E-05	0.17769	7.654E-05	0.31434	0.0001354	430.7454313946984	36.006	0.34633	36.092	35.898	36.244	0.086246	-0.023871	5.5671E-05	NaN	14.582	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129380			43669	1205	25267	25268							0.04097211863370376
SLRTFLLAS	9	Unmodified	_SLRTFLLAS_					0	0	0			REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF	REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2799987792969	2	504.297842	1006.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.675	1	47.675	47.175	48.175	0								0	0	0	0.19804	1	10845	10845		23.148	0	1		+		43670	22479	25268	25269	53154	53154					0.07810333339944009
SLRTPGPR	8	Unmodified	_SLRTPGPR_					0	0	0			REV__ENST00000370790.5_1_X:133930872-133931067:-|nuORF	REV__ENST00000370790.5_1_X:133930872-133931067:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.737548828125	2	442.259051	882.503549	0.33481	0.00014807	0.29287	0.00012952	0.62768	0.0002776	442.25907470569757	21.133	0.65191	21.08	20.779	21.431	-0.052912					43	22	3	0	0	0	0.34092	1	2785	2785		13.508	0	1	246820	+		43671	20390	25269	25270	53155	53155					0.05759740194423557
SLRVEHVQL	9	Unmodified	_SLRVEHVQL_					0	0	0		nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	nc|ENSG00000184428|Q969P6-2|TOP1MT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.771484375	2	540.811648	1079.60874	0.49523	0.00026783	2.7361	0.0014797	3.2314	0.0017476	540.8131076329134	72.878	0.32845	72.932	72.737	73.065	0.053833					18	11	2	0	0	0	0.22596	1	18546	18546		10.824	3.5347	1	125870			43672	7452	25270	25271	53156	53156					0.07212236600184951
SLRVLWVTL	9	Unmodified	_SLRVLWVTL_					0	0	0		ENSG00000160883|ENST00000292432|HK3	ENSG00000160883|ENST00000292432|HK3	ENSG00000160883|ENST00000292432|HK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2830810546875	2	543.837134	1085.65972	0.4792	0.00026061	1.7097	0.00092977	2.1888	0.0011904	543.8379551075569	67.505	0.74776	67.489	67.009	67.757	-0.016296					55	25	3	0	0	0	0.1939	1	16909	16909		30.637	5.2372	1	453700			43673	5497	25271	25272	53157	53157					0.1203118564505985
SLRVQYVVD	9	Unmodified	_SLRVQYVVD_					0	0	0		ENST00000426186.1_3_2:87098444-87121919:+|nuORF	ENST00000426186.1_3_2:87098444-87121919:+|nuORF	ENST00000426186.1_3_2:87098444-87121919:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8164672851562	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.558	1	61.655	61.155	62.155	0.096985								0	0	0	0.18374	1	15127	15127		26.884	0	1				43674	10417	25272	25273	53158	53158					0.0461712798901317
SLRVYLFWG	9	Unmodified	_SLRVYLFWG_					0	0	0		ENST00000399300.6_1_8:94749560-94753202:-|nuORF	ENST00000399300.6_1_8:94749560-94753202:-|nuORF	ENST00000399300.6_1_8:94749560-94753202:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8232421875	2	570.813659	1139.61277	-0.053623	-3.0609E-05	-1.2037	-0.00068708	-1.2573	-0.00071769	570.813065095157	15.027	0.13731	14.962	14.846	14.984	-0.064413					7	4	2	0	0	0	0.32733	1	880	880		4.756	0	1	37018			43675	10177	25273	25274	53159	53159					0.04854326093868622
SLRVYLFWG	9	Unmodified	_SLRVYLFWG_					0	0	0		ENST00000399300.6_1_8:94749560-94753202:-|nuORF	ENST00000399300.6_1_8:94749560-94753202:-|nuORF	ENST00000399300.6_1_8:94749560-94753202:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	570.813659	1139.61277	-0.053623	-3.0609E-05	-1.2037	-0.00068708	-1.2573	-0.00071769	570.813065095157	15.027	0.13731	14.962	14.846	14.984	-0.064413	0.063453	5.2963E-05	NaN	4.756	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37018			43676	10177	25273	25274							0.04854326093868622
SLRYLPLV	8	Unmodified	_SLRYLPLV_					0	0	0			REV__ENSG00000206536|ENST00000383695|OR5K3	REV__ENSG00000206536|ENST00000383695|OR5K3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.81005859375	2	480.797478	959.580402	0.17533	8.4299E-05	0.027778	1.3355E-05	0.20311	9.7655E-05	480.7973987072092	57.771	0.71691	57.771	57.552	58.269	0					52	25	3	0	0	0	0.43758	1	14085	14085		10.074	0.6908	1	693260	+		43677	19022	25274	25275	53160	53160					0.0989953869089959
SLSAIVHCTF	10	Unmodified	_SLSAIVHCTF_					0	0	0		Tigger6a_dup51|chr2:34785001-34785808:+|2.105089876760541|0.2357752546398106|3.16|529.0|11|2|sense	Tigger6a_dup51|chr2:34785001-34785808:+|2.105089876760541|0.2357752546398106|3.16|529.0|11|2|sense	Tigger6a_dup51|chr2:34785001-34785808:+|2.105089876760541|0.2357752546398106|3.16|529.0|11|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.300537109375	2	539.273509	1076.53247	0.42313	0.00022818	-3.0704	-0.0016558	-2.6472	-0.0014276	539.7726757056402	51.696	0.43178	51.705	51.612	52.044	0.0095634					19	15	2	0	0	0	0.26638	1	12130	12130		18.146	0	1	203080			43678	23396	25275	25276	53161	53161					-0.0027390329148602177
SLSAMEAT	8	Unmodified	_SLSAMEAT_					0	0	0			REV__ENST00000564812.5_1_16:67289762-67292232:+|nuORF	REV__ENST00000564812.5_1_16:67289762-67292232:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.52532958984375	2	405.189111	808.363669	-0.2513	-0.00010182	-1.1829	-0.00047928	-1.4342	-0.00058111	405.1901624149961	18.587	0.14227	18.587	18.535	18.677	0					5	4	2	0	0	0	0.34218	1	1971	1971		9.3474	0	1	5628.1	+		43679	15760	25276	25277	53162	53162					-0.04817804924982738
SLSAPLHPE	9	Unmodified	_SLSAPLHPE_					0	0	0		nc|ENSG00000119242|Q53HC0-2|CCDC92;ENSG00000119242|ENST00000238156|CCDC92	nc|ENSG00000119242|Q53HC0-2|CCDC92	nc|ENSG00000119242|Q53HC0-2|CCDC92	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.25469970703125	2	475.750724	949.486896	0.25274	0.00012024	-1.3934	-0.00066292	-1.1407	-0.00054268	475.7499605848714	30.093	0.47585	30.093	29.833	30.309	0					28	16	2	0	0	0	0.24311	1	5410	5410		16.942	0	1	165310			43680	2865	25277	25278	53163	53163					0.010131945177931811
SLSAWLLL	8	Unmodified	_SLSAWLLL_					0	0	0			REV__ENSG00000146233|ENST00000275016|CYP39A1	REV__ENSG00000146233|ENST00000275016|CYP39A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.770751953125	2	451.770929	901.527304	-0.075749	-3.4221E-05	-0.48273	-0.00021808	-0.55848	-0.0002523	451.77067976143104	75.715	0.59967	75.715	75.449	76.049	0					37	21	2	0	0	0	0.2705	1	19510	19510		34.187	0	1	272890	+		43681	16336	25278	25279	53164	53164					0.07260160908231228
SLSAWLLL	8	Unmodified	_SLSAWLLL_					0	0	0			REV__ENSG00000146233|ENST00000275016|CYP39A1	REV__ENSG00000146233|ENST00000275016|CYP39A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	451.770929	901.527304	-0.075749	-3.4221E-05	-0.48273	-0.00021808	-0.55848	-0.0002523	451.77067976143104	75.715	0.59967	75.715	75.449	76.049	0	0.0033498	0.00016306	NaN	34.187	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272890	+		43682	16336	25278	25279							0.07260160908231228
SLSAWLSW	8	Unmodified	_SLSAWLSW_					0	0	0		ENST00000589085.5_1_19:5785216-5787684:-|nuORF	ENST00000589085.5_1_19:5785216-5787684:-|nuORF	ENST00000589085.5_1_19:5785216-5787684:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.25457763671875	2	475.242535	948.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.718	1	29.718	29.218	30.218	0								0	0	0	0.33941	1	5351	5351		19.439	2.4967	1				43683	12156	25279	25280	53165	53165					-0.005778866483069578
SLSAWLSW	8	Unmodified	_SLSAWLSW_					0	0	0		ENST00000589085.5_1_19:5785216-5787684:-|nuORF	ENST00000589085.5_1_19:5785216-5787684:-|nuORF	ENST00000589085.5_1_19:5785216-5787684:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.25457763671875	2	475.242535	948.470518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.745	1	29.758	29.258	30.258	0.013474								0	0	0	0.33941	1	5355	5355		19.439	2.4967	1				43684	12156	25279	25280	53166	53166					-0.005778866483069578
SLSEFRNP	8	Unmodified	_SLSEFRNP_					0	0	0		ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.254638671875	2	475.240524	948.466495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.893	1	29.906	29.406	30.406	0.013474								0	0	0	0.33941	1	5400	5400		19.439	2.4967	1				43685	1811	25280	25281	53167	53167					-0.009799761420026698
SLSEQVAAALK	11	Unmodified	_SLSEQVAAALK_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2955932617188	2	558.816596	1115.61864	0.1418	7.924E-05	0.052131	2.9132E-05	0.19393	0.00010837	558.8164594810052	51.776	0.37947	51.785	51.612	51.992	0.0095634					24	13	2	0	0	0	0.3245	1	12139	12139		17.443	11.711	1	380230			43686	3482	25281	25282	53168	53168					0.06545379814883745
SLSEQVAAALK	11	Unmodified	_SLSEQVAAALK_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	558.816596	1115.61864	0.3305	0.00018469	-0.072586	-4.0563E-05	0.25791	0.00014413	558.816367761129	51.534	0.35535	51.581	51.429	51.784	0.046574	-0.10229	-8.6511E-05	NaN	17.443	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298200			43687	3482	25281	25282							0.06545379814883745
SLSKQRSP	8	Unmodified	_SLSKQRSP_					0	0	0		ENST00000322038.5_2_18:72999502-72999598:+|nuORF	ENST00000322038.5_2_18:72999502-72999598:+|nuORF	ENST00000322038.5_2_18:72999502-72999598:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.75592041015625	2	451.756341	901.498129	-0.14919	-6.7399E-05	-0.065373	-2.9533E-05	-0.21457	-9.6932E-05	451.75622987003607	13.381	0.70527	13.381	13.227	13.932	0					33	24	2	0	0	0	0.41087	1	420	420		18.146	18.146	1	119980			43688	9386	25282	25283	53169	53169					0.043440166119466994
SLSLFIPK	8	Unmodified	_SLSLFIPK_					0	0	0		nc|ENSG00000138336|Q8NFU7-2|TET1;ENSG00000138336|ENST00000373644|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.93353271484375	2	452.778754	903.542954	0.017627	7.9811E-06	0.11925	5.3994E-05	0.13688	6.1975E-05	452.7787721177021	33.699	0.5533	33.766	33.441	33.995	0.066704					45	19	4	0	0	0	0.34131	1	6546	6546		12.532	0	1	160780			43689	4138	25283	25284	53170	53170					0.08732447425279588
SLSLSDFTDF	10	Unmodified	_SLSLSDFTDF_					0	0	0			REV__ENST00000467307.1_1_12:109509452-109519261:+|nuORF	REV__ENST00000467307.1_1_12:109509452-109519261:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.2827758789062	2	566.263862	1130.51317	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.631	1	52.631	52.131	53.131	0								0	0	0	0.32814	1	12370	12370		24.021	1.2843	1		+		43690	15721	25284	25285	53171	53171					-0.04686581101395859
SLSLWCSRCF	10	Unmodified	_SLSLWCSRCF_					0	0	0		ENST00000497543.5_1_3:75471596-75471728:-|nuORF	ENST00000497543.5_1_3:75471596-75471728:-|nuORF	ENST00000497543.5_1_3:75471596-75471728:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.3614501953125	2	601.278269	1200.54198	0.58296	0.00035052	2.3532	0.001415	2.9362	0.0017655	601.2797501504701	58.401	0.5539	58.401	58.1	58.654	0					34	18	2	0	0	0	0.30586	1	14132	14132		19.257	4.4187	1	394510			43691	11248	25285	25286	53172	53172					-0.0502645827757533
SLSNPLPR	8	Unmodified	_SLSNPLPR_					0	0	0		ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2	ENSG00000146872|ENST00000346027|TLK2	ENSG00000146872|ENST00000346027|TLK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.737548828125	2	442.253434	882.492316	0.28042	0.00012402	-1.8086	-0.00079986	-1.5282	-0.00067584	442.2525583487842	21.322	0.45412	21.273	21.066	21.52	-0.049377					22	15	2	0	0	0	0.34092	1	2785	2785		13.508	0	1	95210			43692	4735	25286	25287	53173	53173					0.0463691810026603
SLSNPLPR	8	Unmodified	_SLSNPLPR_					0	0	0		ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2	ENSG00000146872|ENST00000346027|TLK2	ENSG00000146872|ENST00000346027|TLK2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	442.253434	882.492316	0.30864	0.0001365	-1.3676	-0.00060484	-1.059	-0.00046834	442.2527754453604	21.344	0.42486	21.238	21.068	21.493	-0.1054	-0.012969	0.00022071	NaN	13.508	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88504			43693	4735	25286	25287							0.0463691810026603
SLSNWPAVF	9	Unmodified	_SLSNWPAVF_					0	0	0			REV__ENSG00000102265|ENST00000218388|TIMP1	REV__ENSG00000102265|ENST00000218388|TIMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.28167724609375	2	510.761092	1019.50763	0.2492	0.00012728	-1.483	-0.00075747	-1.2338	-0.00063019	511.26132972581064	52.886	0.24287	52.876	52.787	53.03	-0.0096092					10	8	2	0	0	0	0.22596	1	12455	12455		21.747	7.8406	1	243900	+		43694	14315	25287	25288	53174	53174					-0.0013421510253692759
SLSPAFHGL	9	Unmodified	_SLSPAFHGL_					0	0	0		chr7:128463642-128466563|420|12.93|0.0|20.3|+|0|TE_info:SVA_B,SVA_B_dup342,SVA,Retroposon,donor,+,128462839,128463642|None,EFCAB3P1|1;chr7:128463602-128466563|399|12.38|0.0|20.24|+|1|TE_info:SVA_B,SVA_B_dup342,SVA,Retroposon,donor,+,128462839,128463602|None,EFCAB3P1|1;chr7:128463565-128466563|306|11.29|0.0|20.11|+|2|TE_info:SVA_B,SVA_B_dup342,SVA,Retroposon,donor,+,128462839,128463565|None,EFCAB3P1|1;chr7:128463488-128466563|514|42.06|0.0|22.0|+|1|TE_info:SVA_B,SVA_B_dup342,SVA,Retroposon,donor,+,128462839,128463488|None,EFCAB3P1|1	chr7:128463642-128466563|420|12.93|0.0|20.3|+|0|TE_info:SVA_B,SVA_B_dup342,SVA,Retroposon,donor,+,128462839,128463642|None,EFCAB3P1|1	chr7:128463642-128466563|420|12.93|0.0|20.3|+|0|TE_info:SVA_B,SVA_B_dup342,SVA,Retroposon,donor,+,128462839,128463642|None,EFCAB3P1|1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7345886230469	2	464.747985	927.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.434	1	52.434	51.934	52.934	0								0	0	0	0.19804	1	12309	12309		23.148	5.0134	1				43695	175	25288	25289	53175	53175					0.01477515725991907
SLSPAFHGL	9	Unmodified	_SLSPAFHGL_					0	0	0		chr7:128463642-128466563|420|12.93|0.0|20.3|+|0|TE_info:SVA_B,SVA_B_dup342,SVA,Retroposon,donor,+,128462839,128463642|None,EFCAB3P1|1;chr7:128463602-128466563|399|12.38|0.0|20.24|+|1|TE_info:SVA_B,SVA_B_dup342,SVA,Retroposon,donor,+,128462839,128463602|None,EFCAB3P1|1;chr7:128463565-128466563|306|11.29|0.0|20.11|+|2|TE_info:SVA_B,SVA_B_dup342,SVA,Retroposon,donor,+,128462839,128463565|None,EFCAB3P1|1;chr7:128463488-128466563|514|42.06|0.0|22.0|+|1|TE_info:SVA_B,SVA_B_dup342,SVA,Retroposon,donor,+,128462839,128463488|None,EFCAB3P1|1	chr7:128463642-128466563|420|12.93|0.0|20.3|+|0|TE_info:SVA_B,SVA_B_dup342,SVA,Retroposon,donor,+,128462839,128463642|None,EFCAB3P1|1	chr7:128463642-128466563|420|12.93|0.0|20.3|+|0|TE_info:SVA_B,SVA_B_dup342,SVA,Retroposon,donor,+,128462839,128463642|None,EFCAB3P1|1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.734619140625	2	464.747985	927.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.314	1	52.364	51.864	52.864	0.050575								0	0	0	0.19804	1	12271	12271		23.148	0	1				43696	175	25288	25289	53176	53176					0.01477515725991907
SLSPQSGAVF	10	Unmodified	_SLSPQSGAVF_					0	0	0			REV__ENST00000228506.7_1_12:121134403-121134592:+|nuORF	REV__ENST00000228506.7_1_12:121134403-121134592:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7554931640625	2	496.756007	991.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.681	1	31.681	31.181	32.181	0								0	0	0	0.3367	1	5949	5949		20.415	3.4722	1		+		43697	19448	25289	25290	53177	53177					0.001371771722460835
SLSPVILIK	9	Unmodified	_SLSPVILIK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.32080078125	2	485.320786	968.627018	0.37135	0.00018022	-0.17261	-8.3773E-05	0.19873	9.645E-05	485.3206561059715	57.164	1.0279	57.164	56.876	57.904	0					89	37	4	0	0	0	0.03332	1	13800	13800		78.728	6.8058	1	3129600			43698	2429	25290	25291	53178	53178					0.14144978522188012
SLSPVILIK	9	Unmodified	_SLSPVILIK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.32080078125	2	485.320786	968.627018	0.2492	0.00012094	0.0045962	2.2306E-06	0.2538	0.00012317	485.3207447826386	57.103	0.82288	57.182	56.857	57.68	0.078674					76	29	4	0	0	0	0.03069	1	13822	13822		60.074	6.2411	1	3092500			43699	2429	25290	25291	53179	53179					0.14144978522188012
SLSPVILIK	9	Unmodified	_SLSPVILIK_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	485.320786	968.627018	0.26196	0.00012713	-0.12554	-6.0926E-05	0.13642	6.6208E-05	485.3207082430425	57.13	0.81936	57.111	56.838	57.657	-0.019077					79	29	4	0	0	0	0.20167	1	13874	13874		29.082	5.061	1	3272700			43700	2429	25290	25291	53180	53180					0.14144978522188012
SLSRAILDL	9	Unmodified	_SLSRAILDL_					0	0	0		nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;nc|ENSG00000164418|Q13002-7|GRIK2;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-3|GRIK2;nc|ENSG00000164418|Q13002-6|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	nc|ENSG00000164418|Q13002-4|GRIK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.29559326171875	2	494.295299	986.576045	0.59374	0.00029348	-0.033608	-1.6612E-05	0.56013	0.00027687	494.2951776953588	48.141	0.63084	48.184	47.957	48.588	0.043324					59	23	4	0	0	0	0.088443	1	11025	11025		39.95	1.7741	1	1444700			43701	5843	25291	25292	53181	53181					0.08222029477337855
SLSREEEL	8	Unmodified	_SLSREEEL_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.74371337890625	2	481.743096	961.47164	0.5281	0.00025441	0.28852	0.00013899	0.81662	0.0003934	481.743098493784	20.987	0.94787	20.877	20.435	21.383	-0.11003					52	32	2	0	0	0	0.39068	1	2667	2667		20.454	0	1	316390	+		43702	13399	25292	25293	53182	53182					-0.010637170700420029
SLSRFKKF	8	Unmodified	_SLSRFKKF_					0	0	0			REV__HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|84|1|anti-sense	REV__HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|84|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2587890625	2	506.800552	1011.58655	0.36759	0.00018629	1.3742	0.00069644	1.7418	0.00088273	506.8011104391382	41.783	0.26039	41.874	41.807	42.068	0.090252					15	9	2	0	0	0	0.33245	1	9055	9055		4.756	0	1	1273600	+		43703	22740	25293	25294	53183	53183					0.08122056922422871
SLSSIPIFLQ	10	Unmodified	_SLSSIPIFLQ_					0	0	0			REV__ENST00000514651.1_1_6:15524658-15533714:-|nuORF	REV__ENST00000514651.1_1_6:15524658-15533714:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3038330078125	2	552.818607	1103.62266	0.53227	0.00029425	-0.63272	-0.00034978	-0.10044	-5.5528E-05	552.8180218496747	39.853	0.40145	39.946	39.75	40.151	0.092674					22	13	2	0	0	0	0.31629	1	8403	8403		10.074	0	1	190470	+		43704	21836	25294	25295	53184	53184					0.07499469308618245
SLSSKLYLT	9	Unmodified	_SLSSKLYLT_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7973327636719	2	506.289682	1010.56481	0.37726	0.000191	-1.0179	-0.00051535	-0.64065	-0.00032435	506.2892126032881	72.68	0.33178	72.734	72.539	72.871	0.053841					17	11	2	0	0	0	0.25323	1	18566	18566		10.074	0	1	94102	+		43705	18715	25295	25296	53185	53185					0.05995207383170964
SLSSTASPI	9	Unmodified	_SLSSTASPI_					0	0	0			REV__nc|ENSG00000101115|Q9UJQ4-2|SALL4	REV__nc|ENSG00000101115|Q9UJQ4-2|SALL4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.737060546875	2	431.729458	861.444362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.796	1	52.796	52.296	53.296	0								0	0	0	0.17683	1	12421	12421		28.487	0	1		+		43706	14247	25296	25297	53186	53186					0.008097993895830768
SLSTAFGKLI	10	Unmodified	_SLSTAFGKLI_					0	0	0			REV__ENSG00000117620|ENST00000533028|SLC35A3;REV__nc|ENSG00000102100|P78381-5|SLC35A2	REV__nc|ENSG00000102100|P78381-5|SLC35A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2886962890625	2	518.8055	1035.59645	0.639	0.00033152	-1.0024	-0.00052004	-0.36338	-0.00018853	518.8051334079411	54.713	0.59076	54.697	54.389	54.98	-0.015923					58	20	4	0	0	0	0.2811	1	13025	13025		22.736	0	1	788540	+		43707	14305;14982	25297	25298	53187	53187					0.08007200137149084
SLSTCLYY	8	Unmodified	_SLSTCLYY_					0	0	0			REV__nc|ENSG00000148842|Q9H8M5-3|CNNM2	REV__nc|ENSG00000148842|Q9H8M5-3|CNNM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.254638671875	2	475.220411	948.426269	0.31061	0.00014761	3.2498	0.0015444	3.5604	0.001692	475.2221971204328	29.932	0.3121	29.945	29.803	30.116	0.012266					14	10	2	0	0	0	0.34046	1	5406	5406		14.582	1.0738	1	48263	+		43708	16441	25298	25299	53188	53188					-0.05000658856795326
SLSVKPDNFHF	11	Unmodified	_SLSVKPDNFHF_					0	0	0			REV__ENST00000506381.1_1_4:169519393-169519789:-|nuORF	REV__ENST00000506381.1_1_4:169519393-169519789:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.88775634765625	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.462	1	33.462	32.962	33.962	0								0	0	0	0.36335	1	6493	6493		2.4348	0.34878	1		+		43709	21750	25299	25300	53189	53189					0.0072018456346540916
SLSVLFIKK	9	Unmodified	_SLSVLFIKK_					0	0	0			REV__ENST00000521425.5_2_8:71499341-71506778:-|nuORF	REV__ENST00000521425.5_2_8:71499341-71506778:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7978515625	2	517.83406	1033.65357	0.62108	0.00032162	0.27978	0.00014488	0.90086	0.0004665	517.834252434813	48.105	0.5457	48.105	47.934	48.48	0					30	18	2	0	0	0	0.23784	1	11013	11013		13.906	8.1742	1	569910	+		43710	21902	25300	25301	53190	53190					0.1380866741351383
SLSVLSGSLSP	11	Unmodified	_SLSVLSGSLSP_					0	0	0			REV__ENST00000595881.1_1_19:50016730-50017048:+|nuORF	REV__ENST00000595881.1_1_19:50016730-50017048:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.7894897460938	2	523.790047	1045.56554	0.40779	0.0002136	-0.053773	-2.8166E-05	0.35402	0.00018543	523.7898514839517	24.777	2.6044	24.777	23.11	25.714	0					115	89	2	0	0	0	0.30767	1	3570	3570		21.537	1.0834	1	103530	+		43711	22597	25301	25302	53191	53191					0.04458002032242803
SLSVLTQPL	9	Unmodified	_SLSVLTQPL_					0	0	0			REV__ENSG00000160294|ENST00000291688|MCM3AP	REV__ENSG00000160294|ENST00000291688|MCM3AP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7533874511719	2	479.2844	956.554247	0.227	0.0001088	-2.2553	-0.0010809	-2.0283	-0.00097212	479.2828014504496	59.215	0.33321	59.307	59.101	59.434	0.091301					16	11	2	0	0	0	0.22596	1	14343	14343		21.747	0	1	91904	+		43712	16893	25302	25303	53192	53192					0.0742322472875685
SLSVPYRR	8	Unmodified	_SLSVPYRR_					0	0	0		ENST00000564587.5_1_15:75628430-75630983:+|nuORF	ENST00000564587.5_1_15:75628430-75630983:+|nuORF	ENST00000564587.5_1_15:75628430-75630983:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2700500488281	2	489.279983	976.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.323	1	38.323	37.823	38.823	0								0	0	0	0.33941	1	7979	7979		19.439	0	1				43713	11951	25303	25304	53193	53193					0.05620295882943083
SLSYSRYWTK	10	Unmodified	_SLSYSRYWTK_					0	0	0		ENST00000398238.8_1_17:44833191-44833326:+|nuORF	ENST00000398238.8_1_17:44833191-44833326:+|nuORF	ENST00000398238.8_1_17:44833191-44833326:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8880615234375	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.353	1	30.353	29.853	30.853	0								0	0	0	0.37664	1	5544	5544		1.7423	0.52744	1				43714	10158	25304	25305	53194	53194					0.0072018456346540916
SLSYSRYWTK	10	Unmodified	_SLSYSRYWTK_					0	0	0		ENST00000398238.8_1_17:44833191-44833326:+|nuORF	ENST00000398238.8_1_17:44833191-44833326:+|nuORF	ENST00000398238.8_1_17:44833191-44833326:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8880920410156	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.372	1	30.399	29.899	30.899	0.027157								0	0	0	0.37664	1	5545	5545		1.7423	0.41263	1				43715	10158	25304	25305	53195	53195					0.0072018456346540916
SLTALLHCLL	10	Unmodified	_SLTALLHCLL_					0	0	0		ENST00000544948.1_1_11:63849184-63849322:+|nuORF	ENST00000544948.1_1_11:63849184-63849322:+|nuORF	ENST00000544948.1_1_11:63849184-63849322:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.279296875	2	542.315177	1082.6158	0.78221	0.0004242	1.0721	0.00058141	1.8543	0.0010056	542.315439982356	77.521	0.72357	77.521	77.256	77.979	0					35	26	2	0	0	0	0.31267	1	20015	20015		14.838	2.5976	1	193610			43716	11750	25305	25306	53196	53196					0.07779833156405402
SLTELKKK	8	Unmodified	_SLTELKKK_					0	0	0		ENST00000508798.5_1_4:99393458-99393605:-|nuORF	ENST00000508798.5_1_4:99393458-99393605:-|nuORF	ENST00000508798.5_1_4:99393458-99393605:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.242919921875	2	473.800217	945.585882	0.32081	0.000152	-1.1866	-0.0005622	-0.86577	-0.0004102	473.7997229984798	21.24	0.62694	21.187	20.917	21.544	-0.052912					45	21	3	0	0	0	0.34272	1	2845	2845		7.9102	0	1	125050			43717	11352	25306	25307	53197	53197					0.1109121748271491
SLTGARKKGLL	11	Unmodified	_SLTGARKKGLL_					0	0	0		ENST00000371437.4_1_X:119005941-119007306:+|nuORF	ENST00000371437.4_1_X:119005941-119007306:+|nuORF	ENST00000371437.4_1_X:119005941-119007306:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3531494140625	2	572.364047	1142.71354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.658	1	72.628	72.128	73.128	-0.029305								0	0	0	0.34476	1	18519	18519		9.3831	0.78985	1				43718	9818	25307	25308	53198	53198					0.14789358076745884
SLTGSTLVITQ	11	Unmodified	_SLTGSTLVITQ_					0	0	0			REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3292846679688	2	560.316428	1118.6183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.038	1	39.038	38.538	39.538	0								0	0	0	0.26127	1	8197	8197		26.268	2.4784	1		+		43719	15813	25308	25309	53199	53199					0.06373960095038456
SLTIAERQWL	10	Unmodified	_SLTIAERQWL_					0	0	0			REV__ENSG00000115750|ENST00000263663|TAF1B	REV__ENSG00000115750|ENST00000263663|TAF1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.837646484375	2	608.837862	1215.66117	0.18709	0.00011391	-0.29072	-0.000177	-0.10364	-6.3098E-05	608.8375189610648	105.7	1.0637	105.7	105.22	106.28	-0.0027847					373	153	3	0	0	0	0.39935	1	28009	28009		3.5965	0	1	963300	+		43720	14894	25309	25310	53200	53200					0.061967749431460106
SLTKHRRIHT	10	Unmodified	_SLTKHRRIHT_					0	0	0		ENSG00000173258|ENST00000309235|ZNF483	ENSG00000173258|ENST00000309235|ZNF483	ENSG00000173258|ENST00000309235|ZNF483	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.91436767578125	3	416.914305	1247.72109	0.094679	3.9473E-05	0.16279	6.7868E-05	0.25747	0.00010734	416.9143489850115	16.345	0.7859	16.283	15.943	16.729	-0.062534					66	26	4	0	0	0	0.31899	1	1277	1277		7.4771	7.4771	1	578980			43721	6710	25310	25311	53201	53201					0.10713510397022219
SLTKHRRIHT	10	Unmodified	_SLTKHRRIHT_					0	0	0		ENSG00000173258|ENST00000309235|ZNF483	ENSG00000173258|ENST00000309235|ZNF483	ENSG00000173258|ENST00000309235|ZNF483	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	416.914305	1247.72109	-0.17186	-7.1651E-05	0.50036	0.00020861	0.3285	0.00013696	416.9144747353566	16.287	0.77307	16.287	15.947	16.72	0	-0.022565	0.00023099	NaN	7.4771	75	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	505390			43722	6710	25310	25311							0.10713510397022219
SLTLIGVTSSR	11	Unmodified	_SLTLIGVTSSR_					0	0	0			REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3292846679688	2	567.32987	1132.64519	0.24927	0.00014142	0.75973	0.00043102	1.009	0.00057243	567.3301009501672	80.463	2.8102	80.463	78.645	81.455	0					407	117	5	0	0	0	0.39802	2	20852	20606;20852		11.495	1.4208	1	5542900	+		43723	20549	25311	25312	53202;53203	53203					0.08417068706239661
SLTLIGVTSSR	11	Unmodified	_SLTLIGVTSSR_					0	0	0			REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.330078125	2	567.32987	1132.64519	0.39199	0.00022239	-0.35593	-0.00020193	0.036058	2.0457E-05	567.3297854831022	82.276	3.0038	82.276	81.434	84.437	0					554	116	6	0	0	0	0.42762	1	21416	21416		7.609	0	1	21102000	+		43724	20549	25311	25312	53204	53204					0.08417068706239661
SLTLIGVTSSR	11	Unmodified	_SLTLIGVTSSR_					0	0	0			REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.32958984375	2	567.32987	1132.64519	0.26897	0.0001526	0.73002	0.00041416	0.99899	0.00056676	567.3300574984545	80.382	2.87	80.447	78.587	81.457	0.065102					380	122	5	0	0	0	0.39802	5	20738	20554;20600;20646;20696;20738		11.495	7.609	1	6235000	+		43725	20549	25311	25312	53205;53206;53207;53208;53209	53209					0.08417068706239661
SLTLIGVTSSR	11	Unmodified	_SLTLIGVTSSR_					0	0	0			REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3297119140625	2	567.32987	1132.64519	0.37457	0.0002125	-0.30141	-0.000171	0.073151	4.1501E-05	567.329755597451	82.159	4.0309	82.228	80.932	84.963	0.068993					665	170	5	0	0	0	0.42762	2	21238	21238;21328		7.609	7.609	1	20842000	+		43726	20549	25311	25312	53210;53211	53210					0.08417068706239661
SLTLIGVTSSR	11	Unmodified	_SLTLIGVTSSR_					0	0	0			REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3308715820312	2	567.32987	1132.64519	0.28492	0.00016164	0.37604	0.00021334	0.66095	0.00037498	567.3299030070093	80.442	2.8672	80.416	78.604	81.472	-0.026825					370	113	5	0	0	0	0.39802	6	20962	20577;20623;20720;20868;20917;20962		11.495	3.3392	1	5958500	+		43727	20549	25311	25312	53212;53213;53214;53215;53216;53217	53217					0.08417068706239661
SLTLIGVTSSR	11	Unmodified	_SLTLIGVTSSR_					0	0	0			REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	REV__ENST00000458295.5_2_21:40834466-40883616:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.330078125	2	567.32987	1132.64519	0.37678	0.00021376	-0.29089	-0.00016503	0.085891	4.8729E-05	567.3297156430638	82.255	3.9465	82.231	81.019	84.966	-0.02404					641	165	5	0	0	0	0.39802	2	21316	21316;21494		11.495	11.495	1	21005000	+		43728	20549	25311	25312	53218;53219	53218					0.08417068706239661
SLTLKFKF	8	Unmodified	_SLTLKFKF_					0	0	0		nc|ENSG00000172367|Q86UT5-5|NHERF4;nc|ENSG00000172367|Q86UT5-3|NHERF4;ENSG00000172367|ENST00000355547|NHERF4	nc|ENSG00000172367|Q86UT5-5|NHERF4	nc|ENSG00000172367|Q86UT5-5|NHERF4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.3110046386719	2	492.299853	982.585153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.58	1	48.612	48.112	49.112	0.032043								0	0	0	0.35014	1	11117	11117		14.582	2.9414	1				43729	6627	25312	25313	53220	53220					0.09316422833660454
SLTLPSELMV	10	Unmodified	_SLTLPSELMV_					0	0	0		ENST00000182527.3_1_6:52363993-52364077:-|nuORF	ENST00000182527.3_1_6:52363993-52364077:-|nuORF	ENST00000182527.3_1_6:52363993-52364077:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7418823242188	2	545.29665	1088.57875	0.34886	0.00019023	-2.1805	-0.001189	-1.8316	-0.00099879	545.2932759946158	27.203	0.49434	27.203	26.979	27.474	0					54	16	6	0	0	0	0.31847	1	4623	4623		6.7232	0	1	138880			43730	8791	25313	25314	53221	53221					0.03800116819957111
SLTLSAQKP	9	Unmodified	_SLTLSAQKP_					0	0	0			REV__ENST00000513648.5_1_5:102201854-102209236:+|nuORF	REV__ENST00000513648.5_1_5:102201854-102209236:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.79168701171875	2	472.7742	943.533846	0.32048	0.00015151	-1.1551	-0.00054611	-0.83464	-0.0003946	472.7737323131043	21.226	0.45271	21.173	21.005	21.457	-0.05291					25	15	2	0	0	0	0.25622	1	2761	2761		7.2892	0.56607	1	53055	+		43731	21826	25314	25315	53222	53222					0.059820540689429436
SLTLSHAPIY	10	Unmodified	_SLTLSHAPIY_					0	0	0			REV__nc|ENSG00000109654|Q9C040|TRIM2	REV__nc|ENSG00000109654|Q9C040|TRIM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.7742919921875	2	551.300581	1100.58661	0.14558	8.0256E-05	-0.57749	-0.00031837	-0.43192	-0.00023812	551.3006352272639	60.321	0.15913	60.321	60.228	60.387	0					8	5	2	0	0	0	0.31051	1	14753	14753		7.2892	0	1	122990	+		43732	14647	25315	25316	53223	53223					0.04034012131751297
SLTNFQKVQ	9	Unmodified	_SLTNFQKVQ_					0	0	0		nc|ENSG00000079950|O15400-2|STX7;ENSG00000079950|ENST00000367941|STX7	nc|ENSG00000079950|O15400-2|STX7	nc|ENSG00000079950|O15400-2|STX7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.265869140625	2	532.790381	1063.56621	0.05456	2.9069E-05	0.13461	7.1721E-05	0.18917	0.00010079	532.7902405197492	27.941	0.5006	27.942	27.687	28.188	0.00046921					29	17	2	0	0	0	0.25938	1	4765	4765		4.3292	0	1	108190			43733	1145	25316	25317	53224	53224					0.036968414719467546
SLTRDALEV	9	Unmodified	_SLTRDALEV_					0	0	0			REV__ENST00000493730.1_1_9:140069903-140070286:-|nuORF	REV__ENST00000493730.1_1_9:140069903-140070286:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.27447509765625	2	502.274564	1002.53457	0.16275	8.1743E-05	-0.065851	-3.3075E-05	0.096895	4.8668E-05	502.2745610156885	41.003	1.0584	41.003	40.445	41.504	0					117	38	5	0	0	0	0.034444	1	8871	8871		58.679	3.1761	1	10105000	+		43734	17929	25317	25318	53225	53225					0.033408487179940494
SLTRDALEV	9	Unmodified	_SLTRDALEV_					0	0	0			REV__ENST00000493730.1_1_9:140069903-140070286:-|nuORF	REV__ENST00000493730.1_1_9:140069903-140070286:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2742919921875	2	502.274564	1002.53457	0.41328	0.00020758	-0.2786	-0.00013993	0.13468	6.7647E-05	502.27442570153784	40.838	1.0119	40.931	40.502	41.513	0.09267					124	37	5	0	0	0	0.057976	1	8895	8895		49.933	9.9833	1	9657000	+		43735	17929	25317	25318	53226	53226					0.033408487179940494
SLTSKKCLK	9	Unmodified	_SLTSKKCLK_					0	0	0			REV__ENSG00000081386|ENST00000223428|ZNF510	REV__ENSG00000081386|ENST00000223428|ZNF510	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.29266357421875	2	504.299527	1006.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.795	1	60.892	60.392	61.392	0.096985								0	0	0	0.21009	1	14885	14885		19.257	2.3147	1		+		43736	13904	25318	25319	53227	53227					0.08147260122302669
SLTSKKCLK	9	Unmodified	_SLTSKKCLK_					0	0	0			REV__ENSG00000081386|ENST00000223428|ZNF510	REV__ENSG00000081386|ENST00000223428|ZNF510	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.29248046875	2	504.299527	1006.5845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.866	1	60.857	60.357	61.357	-0.0094566								0	0	0	0.16757	1	14906	14906		30.637	7.9003	1		+		43737	13904	25318	25319	53228	53228					0.08147260122302669
SLTSSRKF	8	Unmodified	_SLTSSRKF_					0	0	0			REV__ENSG00000162676|ENST00000294702|GFI1	REV__ENSG00000162676|ENST00000294702|GFI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.8008117675781	2	463.258717	924.50288	0.093097	4.3128E-05	0.088385	4.0945E-05	0.18148	8.4073E-05	463.2586140261653	38.274	0.46557	38.365	38.237	38.702	0.090881					25	16	2	0	0	0	0.34319	1	7982	7982		0.69038	0	1	136950	+		43738	16999	25319	25320	53229	53229					0.03760900754718932
SLTTIEKRFGL	11	Unmodified	_SLTTIEKRFGL_					0	0	0		ENST00000464676.5_1_3:133669982-133717557:-|nuORF;ENST00000462770.5_1_3:133661447-133748739:-|nuORF;ENSG00000174640|ENST00000310926|SLCO2A1	ENST00000464676.5_1_3:133669982-133717557:-|nuORF	ENST00000464676.5_1_3:133669982-133717557:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.5747375488281	3	422.246839	1263.71869	-0.19182	-8.0996E-05	-1.818	-0.00076766	-2.0098	-0.00084865	422.2457966294779	19.535	0.94964	19.535	19.095	20.045	0					50	33	2	0	0	0	0.33094	1	2172	2172		4.7159	0	1	89894			43739	6809	25320	25321	53230	53230					0.09737617148698519
SLTVPVHF	8	Unmodified	_SLTVPVHF_					0	0	0			REV__ENST00000423056.2_1_1:11539256-11541348:+|nuORF	REV__ENST00000423056.2_1_1:11539256-11541348:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.77947998046875	2	450.252903	898.491253	-1.0935	-0.00049233	-0.34401	-0.00015489	-1.4375	-0.00064722	450.25297928131795	34.869	0.4746	34.944	34.843	35.318	0.075306					21	16	2	0	0	0	0.33995	1	6900	6900		15.768	10.008	1	82404	+		43740	20875	25321	25322	53231	53231					0.03794703731375648
SLTVPVHF	8	Unmodified	_SLTVPVHF_					0	0	0			REV__ENST00000423056.2_1_1:11539256-11541348:+|nuORF	REV__ENST00000423056.2_1_1:11539256-11541348:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	450.252903	898.491253	-0.38951	-0.00017538	0.24353	0.00010965	-0.14599	-6.5731E-05	450.252947430569	35.219	0.32197	35.219	35.118	35.439	0	0.13725	0.00019308	NaN	15.768	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58735	+		43741	20875	25321	25322							0.03794703731375648
SLTWFINLF	9	Unmodified	_SLTWFINLF_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3256225585938	2	570.808042	1139.60153	0.36099	0.00020605	-3.9986	-0.0022825	-3.6377	-0.0020764	570.8059445388753	59.088	0.30359	59.179	59.047	59.351	0.091305					14	10	2	0	0	0	0.18943	1	14322	14322		23.148	0	1	172970			43742	2855	25322	25323	53232	53232					0.03731503999733832
SLTYLYEQY	9	Unmodified	_SLTYLYEQY_					0	0	0		ENST00000477049.1_1_9:135139628-135141576:-|nuORF	ENST00000477049.1_1_9:135139628-135141576:-|nuORF	ENST00000477049.1_1_9:135139628-135141576:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.3023681640625	2	590.282054	1178.54956	0.019899	1.1746E-05	-1.5611	-0.00092151	-1.5412	-0.00090977	590.2816056359587	25.026	0.86843	24.995	24.426	25.294	-0.031408					29	29	2	0	0	0	0.25938	1	3842	3842		4.3292	0.38484	1	60271			43743	10952	25323	25324	53233	53233					-0.03257704204656875
SLVAADFLLI	10	Unmodified	_SLVAADFLLI_					0	0	0		ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7621459960938	2	531.3157	1060.61685	0.57738	0.00030677	-0.91447	-0.00048587	-0.33709	-0.0001791	531.8165807137703	89.535	1.3249	89.534	88.478	89.803	-0.00080872					104	72	2	0	0	0	0.31629	1	23602	23602		10.074	1.4806	1	111700			43744	5626	25324	25325	53234	53234					0.0889637079694694
SLVAFPKL	8	Unmodified	_SLVAFPKL_					0	0	0		ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.7734069824219	2	437.773471	873.53239	-0.10987	-4.81E-05	-0.034852	-1.5257E-05	-0.14473	-6.3357E-05	437.7734301505058	61.251	0.50632	61.242	61.046	61.552	-0.0094566					31	18	2	0	0	0	0.30517	1	15052	15052		30.225	0	1	605820			43745	6054	25325	25326	53235	53235					0.09056464770844741
SLVAPFAAVGA	11	Unmodified	_SLVAPFAAVGA_					0	0	0			REV__nc|ENSG00000139910|P51513-5|NOVA1	REV__nc|ENSG00000139910|P51513-5|NOVA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.29132080078125	2	501.784567	1001.55458	0.37764	0.0001895	-1.7185	-0.00086232	-1.3409	-0.00067282	501.78354213870244	75.406	0.24439	75.458	75.349	75.593	0.052361					10	8	2	0	0	0	0.31791	1	19373	19373		20.415	3.3016	1	97601	+		43746	16012	25326	25327	53236	53236					0.05386644448606148
SLVAPRNLLP	10	Unmodified	_SLVAPRNLLP_					0	0	0		ENST00000244061.5_1_20:48570270-48570396:+|nuORF	ENST00000244061.5_1_20:48570270-48570396:+|nuORF	ENST00000244061.5_1_20:48570270-48570396:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.985107421875	2	540.332216	1078.64988	0.51628	0.00027896	-4.0961	-0.0022133	-3.5798	-0.0019343	540.3301569236334	98.234	0.048195	98.227	98.214	98.262	-0.0068283					6	4	2	0	0	0	0.32009	1	26313	26313		3.9444	0	1	82779			43747	8893	25327	25328	53237	53237					0.11369997639667417
SLVAPRNLLP	10	Unmodified	_SLVAPRNLLP_					0	0	0		ENST00000244061.5_1_20:48570270-48570396:+|nuORF	ENST00000244061.5_1_20:48570270-48570396:+|nuORF	ENST00000244061.5_1_20:48570270-48570396:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	540.332216	1078.64988	0.12416	6.7086E-05	-3.1835	-0.0017201	-3.0593	-0.001653	540.3305027584812	98.209	0.056686	98.209	98.174	98.231	0	-0.0091881	0.00015858	NaN	3.9444	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55626			43748	8893	25327	25328							0.11369997639667417
SLVAPTRR	8	Unmodified	_SLVAPTRR_					0	0	0			REV__ENST00000491293.1_1_1:228289992-228290982:-|nuORF	REV__ENST00000491293.1_1_1:228289992-228290982:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2744140625	2	450.274701	898.534849	0.28532	0.00012847	-0.28611	-0.00012883	-0.00079307	-3.571E-07	450.2744885807236	82.737	1.3467	82.81	82.452	83.799	0.073097					123	52	3	0	0	0	0.45942	1	21786	21786		2.5775	0	1	11782000	+		43749	21613	25328	25329	53238	53238					0.08152313228504227
SLVAPTRR	8	Unmodified	_SLVAPTRR_					0	0	0			REV__ENST00000491293.1_1_1:228289992-228290982:-|nuORF	REV__ENST00000491293.1_1_1:228289992-228290982:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2754821777344	2	450.274701	898.534849	0.36379	0.0001638	-0.26926	-0.00012124	0.094529	4.2564E-05	450.27447917864663	82.884	1.3226	82.864	82.396	83.719	-0.020584					161	53	5	0	0	0	0.45307	3	21760	21760;21766;21817		4.756	0	1	12647000	+		43750	21613	25328	25329	53239;53240;53241	53239					0.08152313228504227
SLVARVWTLPP	11	Unmodified	_SLVARVWTLPP_					0	0	0		ENST00000311956.8_1_11:46700251-46700590:-|nuORF	ENST00000311956.8_1_11:46700251-46700590:-|nuORF	ENST00000311956.8_1_11:46700251-46700590:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8692626953125	2	619.866423	1237.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.576	1	94.659	94.159	95.159	0.082779								0	0	0	0.36995	1	25231	25231		4.5289	1.2476	1				43751	9320	25329	25330	53242	53242					0.10894242219501393
SLVCQHQFCR	10	Unmodified	_SLVCQHQFCR_					0	0	0		ENST00000584680.1_1_18:26231883-26232303:+|nuORF	ENST00000584680.1_1_18:26231883-26232303:+|nuORF	ENST00000584680.1_1_18:26231883-26232303:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.91912841796875	3	407.526954	1219.55903	0.068223	2.7803E-05	-2.5308	-0.0010314	-2.4626	-0.0010036	407.52566606579876	29.934	0.649	29.934	29.492	30.141	0					27	22	2	0	0	0	0.31889	1	5292	5292		3.3196	1.2357	1	38753			43752	12096	25330	25331	53243	53243					-0.041965376717826075
SLVDKLRII	9	Unmodified	_SLVDKLRII_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8248291015625	2	528.842416	1055.67028	0.43691	0.00023106	0.03463	1.8314E-05	0.47154	0.00024937	528.8423767328696	57.391	0.3906	57.477	57.24	57.63	0.085617					20	13	2	0	0	0	0.23007	1	13819	13819		19.257	0.88389	1	349970			43753	6752	25331	25332	53244	53244					0.14467168299461264
SLVDKLRII	9	Unmodified	_SLVDKLRII_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.842416	1055.67028	0.3511	0.00018568	-0.1503	-7.9486E-05	0.2008	0.00010619	528.8422795423733	57.617	0.32761	57.6	57.388	57.716	-0.0172	0.060025	-4.7865E-05	NaN	19.257	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368030			43754	6752	25331	25332							0.14467168299461264
SLVFCLKLI	9	Unmodified	_SLVFCLKLI_					0	0	0		ENST00000231061.8_1_5:151042679-151042859:-|nuORF	ENST00000231061.8_1_5:151042679-151042859:-|nuORF	ENST00000231061.8_1_5:151042679-151042859:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3173828125	2	518.317189	1034.61982	0.34416	0.00017838	0.15922	8.2526E-05	0.50338	0.00026091	518.3171734225309	76.222	2.8448	76.276	76.189	79.034	0.053413					351	104	5	0	0	0	0.32733	1	20108	20108		4.756	4.756	1	5643900			43755	8861	25332	25333	53245	53245					0.10389922650097105
SLVFCLKLI	9	Unmodified	_SLVFCLKLI_					0	0	0		ENST00000231061.8_1_5:151042679-151042859:-|nuORF	ENST00000231061.8_1_5:151042679-151042859:-|nuORF	ENST00000231061.8_1_5:151042679-151042859:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3171997070312	2	518.317189	1034.61982	0.41075	0.0002129	-0.17185	-8.9072E-05	0.2389	0.00012382	518.31694104306	79.374	1.4988	79.436	79.018	80.517	0.061417					135	60	3	0	0	0	0.32733	2	20584	20492;20584		4.756	0	1	1098400			43756	8861	25332	25333	53246;53247	53247					0.10389922650097105
SLVFCLKLI	9	Unmodified	_SLVFCLKLI_					0	0	0		ENST00000231061.8_1_5:151042679-151042859:-|nuORF	ENST00000231061.8_1_5:151042679-151042859:-|nuORF	ENST00000231061.8_1_5:151042679-151042859:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3176879882812	2	518.317189	1034.61982	0.49679	0.00025749	-0.051654	-2.6773E-05	0.44513	0.00023072	518.3170881604384	76.271	4.1828	76.239	74.838	79.021	-0.031479					502	157	4	0	0	0	0.30166	2	19926	19926;20204		8.5933	0	1	7331400			43757	8861	25332	25333	53248;53249	53248					0.10389922650097105
SLVFTVGLLG	10	Unmodified	_SLVFTVGLLG_					0	0	0		ENSG00000183625|ENST00000395940|CCR3;nc|ENSG00000183625|P51677-2|CCR3	ENSG00000183625|ENST00000395940|CCR3	ENSG00000183625|ENST00000395940|CCR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.8289489746094	2	503.302593	1004.59063	0.52682	0.00026515	0.0090584	4.5591E-06	0.53588	0.00026971	503.3025128851742	51.163	0.9945	51.173	50.511	51.506	0.0095634					59	37	2	0	0	0	0.29589	1	11965	11965		17.113	0	1	449390			43758	7382	25333	25334	53250	53250					0.08852101625484465
SLVFYALGF	9	Unmodified	_SLVFYALGF_					0	0	0			REV__nc|ENSG00000112167|Q9NPB0-2|SAYSD1	REV__nc|ENSG00000112167|Q9NPB0-2|SAYSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2754211425781	2	508.776211	1015.53787	0.39677	0.00020187	-2.667	-0.0013569	-2.2702	-0.001155	508.77605023605594	90.122	0.42564	90.123	90.048	90.474	0.00039673					38	30	2	0	0	0	0.24311	1	23926	23926		16.942	0	1	111760	+		43759	14759	25334	25335	53251	53251					0.030721435626674065
SLVGRSKTI	9	Unmodified	_SLVGRSKTI_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7821350097656	2	480.795466	959.57638	0.30493	0.00014661	-1.8365	-0.00088299	-1.5316	-0.00073638	480.79451889530066	21.097	0.2807	21.097	20.973	21.254	0					13	9	2	0	0	0	0.28674	1	2775	2775		10.824	1.4765	1	59968			43760	3332	25335	25336	53252	53252					0.09497449197192509
SLVGVKQHER	10	Unmodified	_SLVGVKQHER_					0	0	0			REV__ENST00000461181.1_1_2:219610358-219610996:+|nuORF	REV__ENST00000461181.1_1_2:219610358-219610996:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.8311157226562	2	576.827829	1151.64111	0.49318	0.00028448	1.6639	0.00095979	2.1571	0.0012443	576.8299088709019	45.522	0.73548	45.522	45.238	45.974	0					71	26	4	0	0	0	0.29978	1	10153	10153		20.454	0	1	925140	+		43761	21214	25336	25337	53253	53253					0.07135024003173385
SLVGVKQHER	10	Unmodified	_SLVGVKQHER_					0	0	0			REV__ENST00000461181.1_1_2:219610358-219610996:+|nuORF	REV__ENST00000461181.1_1_2:219610358-219610996:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.3193359375	2	576.827829	1151.64111	0.49318	0.00028448	1.6639	0.00095979	2.1571	0.0012443	576.8299088709019	45.522	0.73548	45.522	45.238	45.974	0					71	26	4	0	0	0	0.30079	1	10136	10136		20.454	6.5476	1	925140	+		43762	21214	25336	25337	53254	53254					0.07135024003173385
SLVIIAVRWEP	11	Unmodified	_SLVIIAVRWEP_					0	0	0		ENST00000308275.7_2_15:76222248-76222314:+|nuORF	ENST00000308275.7_2_15:76222248-76222314:+|nuORF	ENST00000308275.7_2_15:76222248-76222314:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8601684570312	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.95	1	105.95	105.45	106.45	0								0	0	0	0.38114	1	28031	28031		1.3295	0	1				43763	9287	25337	25338	53255	53255					0.11490511390979918
SLVIIAVRWEP	11	Unmodified	_SLVIIAVRWEP_					0	0	0		ENST00000308275.7_2_15:76222248-76222314:+|nuORF	ENST00000308275.7_2_15:76222248-76222314:+|nuORF	ENST00000308275.7_2_15:76222248-76222314:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8599243164062	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.04	1	113.02	112.52	113.52	-0.017303								0	0	0	0.38114	1	29393	29393		1.3295	0	1				43764	9287	25337	25338	53256	53256					0.11490511390979918
SLVIIAVRWEP	11	Unmodified	_SLVIIAVRWEP_					0	0	0		ENST00000308275.7_2_15:76222248-76222314:+|nuORF	ENST00000308275.7_2_15:76222248-76222314:+|nuORF	ENST00000308275.7_2_15:76222248-76222314:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8817749023438	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.79	1	117.77	117.27	118.27	-0.024147								0	0	0	0.38114	1	30474	30474		1.3295	0	1				43765	9287	25337	25338	53257	53257					0.11490511390979918
SLVIIAVRWEP	11	Unmodified	_SLVIIAVRWEP_					0	0	0		ENST00000308275.7_2_15:76222248-76222314:+|nuORF	ENST00000308275.7_2_15:76222248-76222314:+|nuORF	ENST00000308275.7_2_15:76222248-76222314:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.88232421875	2	641.87953	1281.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.72	1	111.73	111.23	112.23	0.0131								0	0	0	0.38114	1	29084	29084		1.3295	0	1				43766	9287	25337	25338	53258	53258					0.11490511390979918
SLVINYDL	8	Unmodified	_SLVINYDL_					0	0	0		nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000485101.5_1_3:186505555-186505672:+|nuORF;ENST00000461021.1_1_3:186505247-186505672:+|nuORF;ENST00000494445.1_1_3:186505247-186506105:+|nuORF;ENST00000421800.1_1_13:29173910-29174120:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1	nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	nc|ENSG00000156976|Q14240-2|EIF4A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.3135070800781	2	468.755475	935.496398	0.086225	4.0418E-05	0.021564	1.0108E-05	0.10779	5.0526E-05	468.7554260327122	65.485	0.73659	65.485	65.218	65.955	0					57	26	3	0	0	0	0.31088	1	16292	16292		21.747	0	1	795980			43767	5273;5538	25338	25339	53259	53259					0.026069628033155823
SLVKSTIFI	9	Unmodified	_SLVKSTIFI_					0	0	0		ENST00000440623.5_1_2:182756982-182781157:+|nuORF;nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2	ENST00000440623.5_1_2:182756982-182781157:+|nuORF	ENST00000440623.5_1_2:182756982-182781157:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.310302734375	2	504.310418	1006.60628	0.40495	0.00020422	-0.013407	-6.7612E-06	0.39154	0.00019746	504.31022585063005	66.347	0.62714	66.431	66.083	66.71	0.083832					58	22	3	0	0	0	0.19747	1	16564	16564		24.021	24.021	1	750920			43768	4150	25339	25340	53260	53260					0.10324388142510088
SLVPNVPYFDL	11	Unmodified	_SLVPNVPYFDL_					0	0	0		ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.8923034667969	3	421.892173	1262.65469	-0.096882	-4.0874E-05	1.3656	0.00057615	1.2687	0.00053527	421.8923285818552	26.51	0.80911	26.472	26.1	26.909	-0.038671					65	28	3	0	0	0	0.42346	1	4428	4428		4.1166	0.52957	1	224540			43769	1269	25340	25341	53261	53261					0.03386836991739983
SLVPRLTLY	9	Unmodified	_SLVPRLTLY_					0	0	0		nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3051147460938	2	531.321317	1060.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.923	1	69.923	69.423	70.423	0								0	0	0	0.21009	1	17695	17695		19.257	0	1				43770	13023	25341	25342	53262	53262					0.10019192891104467
SLVPRLTLY	9	Unmodified	_SLVPRLTLY_					0	0	0		nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3052978515625	2	531.321317	1060.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.984	1	69.962	69.462	70.462	-0.022087								0	0	0	0.23852	1	17701	17701		10.074	0.72649	1				43771	13023	25341	25342	53263	53263					0.10019192891104467
SLVQEANYL	9	Unmodified	_SLVQEANYL_					0	0	0			REV__ENSG00000159128|ENST00000290219|IFNGR2	REV__ENSG00000159128|ENST00000290219|IFNGR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.28466796875	2	518.769114	1035.52368	0.37693	0.00019554	-0.43217	-0.0002242	-0.055237	-2.8655E-05	518.768731263808	42.934	0.68432	42.934	42.678	43.362	0					49	24	3	0	0	0	0.25123	1	9498	9498		12.241	2.0573	1	453980	+		43772	16836	25342	25343	53264	53264					0.007334463437018712
SLVRILFLDDK	11	Unmodified	_SLVRILFLDDK_					0	0	0		nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.5461730957031	3	440.262489	1317.76564	0.10372	4.5662E-05	-0.15418	-6.7881E-05	-0.050468	-2.2219E-05	440.26334643648545	27.111	0.090479	27.1	27.042	27.132	-0.01156					4	2	2	0	0	0	0.33296	1	4544	4544		2.6312	0.19645	1	12731			43773	4509	25343	25344	53265	53265					0.11946476699836239
SLVRLFTSK	9	Unmodified	_SLVRLFTSK_					0	0	0			REV__ENSG00000175414|ENST00000310389|ARL10	REV__ENSG00000175414|ENST00000310389|ARL10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7786865234375	2	525.818941	1049.62333	0.29547	0.00015536	1.6021	0.00084242	1.8976	0.00099779	525.8189207407654	29.627	0.49521	29.64	29.329	29.824	0.013475					32	16	3	0	0	0	0.24924	1	5277	5277		6.6304	0	1	87851	+		43774	17889	25344	25345	53266	53266					0.10050308748327552
SLVRQERNLI	10	Unmodified	_SLVRQERNLI_					0	0	0			REV__ENST00000258341.4_1_1:183112029-183112179:+|nuORF	REV__ENST00000258341.4_1_1:183112029-183112179:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9107360839844	3	409.910449	1226.70952	0.049174	2.0157E-05	-0.46642	-0.00019119	-0.41724	-0.00017103	409.9103505132557	26.717	0.90349	26.678	26.37	27.274	-0.038671					99	31	4	0	0	0	0.26354	1	4409	4409		24.882	7.833	1	1517800	+		43775	19565	25345	25346	53267	53267					0.10523268583028766
SLVRRHIK	8	Unmodified	_SLVRRHIK_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.29248046875	2	504.824892	1007.63523	0.74263	0.0003749	2.0449	0.0010323	2.7876	0.0014072	504.8260518250789	60.778	0.40147	60.769	60.516	60.918	-0.0094566					22	14	2	0	0	0	0.34092	1	14906	14906		13.508	0	1	287820			43776	3097	25346	25347	53268	53268					0.13171970282166967
SLVSFEELIDI	11	Unmodified	_SLVSFEELIDI_					0	0	0			REV__nc|ENSG00000168116|Q9HCI6-2|KIAA1586	REV__nc|ENSG00000168116|Q9HCI6-2|KIAA1586	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.8766784667969	3	422.227221	1263.65983	0.27588	0.00011649	-0.49794	-0.00021024	-0.22205	-9.3757E-05	422.56091599383444	48.292	0.10138	48.335	48.269	48.371	0.043324					5	3	2	0	0	0	0.33122	1	11033	11033		7.0371	0.84524	1	68224	+		43777	17441	25347	25348	53269	53269					0.03855096063739438
SLVSSRRR	8	Unmodified	_SLVSSRRR_					0	0	0			REV__nc|ENSG00000067842|Q16720-6|ATP2B3	REV__nc|ENSG00000067842|Q16720-6|ATP2B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.26214599609375	2	480.788507	959.562461	0.43683	0.00021002	1.8068	0.0008687	2.2437	0.0010787	480.7893365778804	21.005	0.36525	20.952	20.723	21.088	-0.05291					20	12	2	0	0	0	0.3366	1	2724	2724		18.135	4.2289	1	72996	+		43778	22892	25348	25349	53270	53270					0.0810621648876122
SLVSVLNGSPR	11	Unmodified	_SLVSVLNGSPR_					0	0	0			REV__ENSG00000172016|ENST00000305165|REG3A	REV__ENSG00000172016|ENST00000305165|REG3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3414306640625	2	564.822212	1127.62987	0.11889	6.7153E-05	1.1268	0.00063645	1.2457	0.0007036	564.8228118379025	16.217	0.36787	16.217	15.981	16.349	0					15	12	2	0	0	0	0.33329	1	1225	1225		1.0715	0.10919	1	22666	+		43779	17686	25349	25350	53271	53271					0.07116201909047959
SLVSVLNGSPR	11	Unmodified	_SLVSVLNGSPR_					0	0	0			REV__ENSG00000172016|ENST00000305165|REG3A	REV__ENSG00000172016|ENST00000305165|REG3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.822212	1127.62987	0.17302	9.7726E-05	1.3754	0.00077685	1.5484	0.00087458	565.3243341765011	16.492	0.17333	16.378	16.33	16.503	-0.11434	0.14631	0.00025887	NaN	1.0715	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13047	+		43780	17686	25349	25350							0.07116201909047959
SLVSYFFP	8	Unmodified	_SLVSYFFP_					0	0	0			REV__ENST00000564644.5_1_15:75917718-75917934:-|nuORF	REV__ENST00000564644.5_1_15:75917718-75917934:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2626037597656	2	480.247286	958.48002	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.576	1	24.544	24.044	25.044	-0.031408								0	0	0	0.36169	1	3790	3790		9.3474	2.0582	1		+		43781	22344	25350	25351	53272	53272					-0.0008811836275981477
SLVTKSVK	8	Unmodified	_SLVTKSVK_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8883361816406	2	431.273835	860.533118	-0.25367	-0.0001094	-0.31034	-0.00013384	-0.564	-0.00024324	431.2736842336061	22.55	0.29996	22.505	22.409	22.709	-0.044867					14	9	2	0	0	0	0.34337	1	3236	3236		5.2307	0	1	25044			43782	2868	25351	25352	53273	53273					0.09727259419901202
SLVVAHYAEQL	11	Unmodified	_SLVVAHYAEQL_					0	0	0			REV__ENSG00000161513|ENST00000293195|FDXR	REV__ENSG00000161513|ENST00000293195|FDXR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.20843505859375	3	410.555672	1228.64519	0.10114	4.1524E-05	-0.53723	-0.00022056	-0.43609	-0.00017904	410.55543907076947	29.771	0.75979	29.771	29.465	30.225	0					58	26	4	0	0	0	0.32996	1	5414	5414		4.1166	0	1	223890	+		43783	16940	25352	25353	53274	53274					0.04001068706224942
SLVVRLLN	8	Unmodified	_SLVVRLLN_					0	0	0			REV__nc|ENSG00000110713|P52948-6|NUP98	REV__nc|ENSG00000110713|P52948-6|NUP98	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.79254150390625	2	457.295102	912.575651	-0.72554	-0.00033179	-0.096035	-4.3916E-05	-0.82158	-0.0003757	457.29504909912544	34.42	1.5756	34.495	33.742	35.318	0.075306					105	56	3	0	0	0	0.32435	1	6918	6918		23.148	0	1	1073400	+		43784	14680	25353	25354	53275	53275					0.11586654548125352
SLVWVWLI	8	Unmodified	_SLVWVWLI_					0	0	0			REV__ENSG00000169715|ENST00000330439|MT1E	REV__ENSG00000169715|ENST00000330439|MT1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7743835449219	2	508.302396	1014.59024	0.31599	0.00016062	-3.2068	-0.00163	-2.8908	-0.0014694	508.3014769364244	66.554	0.79951	66.638	66.219	67.018	0.083832					40	28	3	0	0	0	0.31375	1	16565	16565		26.341	0	1	130560	+		43785	17535	25354	25355	53276	53276					0.08352726696284662
SLVYGELLNKD	11	Unmodified	_SLVYGELLNKD_					0	0	0			REV__ENST00000284617.6_1_1:229459666-229459729:-|nuORF	REV__ENST00000284617.6_1_1:229459666-229459729:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.2431640625	3	417.559082	1249.65542	0.36078	0.00015065	0.68072	0.00028424	1.0415	0.00043489	417.5593181463012	36.001	0.42999	36.087	35.79	36.22	0.086246					24	15	2	0	0	0	0.33189	1	7198	7198		3.5927	0	1	155440	+		43786	19731	25355	25356	53277	53277					0.04057631640807813
SLWAKPKVQ	9	Unmodified	_SLWAKPKVQ_					0	0	0			REV__ENSG00000158473|ENST00000674085|CD1D	REV__ENSG00000158473|ENST00000674085|CD1D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3038940429688	2	528.813659	1055.61277	0.46819	0.00024759	1.666	0.00088103	2.1342	0.0011286	528.8140787339815	40.959	0.95343	41.05	40.529	41.482	0.090252					49	34	2	0	0	0	0.24311	1	8647	8647		11.64	3.7301	1	249770	+		43787	16812	25356	25357	53278	53278					0.08718326093890028
SLWAKPKVQ	9	Unmodified	_SLWAKPKVQ_					0	0	0			REV__ENSG00000158473|ENST00000674085|CD1D	REV__ENSG00000158473|ENST00000674085|CD1D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3038940429688	2	528.813659	1055.61277	0.62407	0.00033002	1.7021	0.00090007	2.3261	0.0012301	528.8147651416116	40.318	0.59433	40.411	40.151	40.745	0.09267					39	21	3	0	0	0	0.24311	1	8647	8647		11.64	3.7301	1	353440	+		43788	16812	25356	25357	53279	53279					0.08718326093890028
SLWALTEPCL	10	Unmodified	_SLWALTEPCL_					0	0	0			REV__ENST00000452859.6_1_17:46199194-46199485:+|nuORF	REV__ENST00000452859.6_1_17:46199194-46199485:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3068237304688	2	566.788992	1131.56343	0.29297	0.00016605	-0.84596	-0.00047948	-0.55299	-0.00031343	566.7886235081361	31.848	0.99697	31.889	31.672	32.669	0.040989					64	35	2	0	0	0	0.2811	2	6186	6135;6186		22.736	22.736	1	475250	+		43789	21131	25357	25358	53280;53281	53281					0.002912500227921555
SLWALTVSL	9	Unmodified	_SLWALTVSL_					0	0	0		nc|ENSG00000133794|O00327-7|BMAL1	nc|ENSG00000133794|O00327-7|BMAL1	nc|ENSG00000133794|O00327-7|BMAL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.28662109375	2	495.286943	988.559333	0.68967	0.00034158	-0.66817	-0.00033094	0.021498	1.0648E-05	495.2864823363201	83.509	0.53999	83.509	83.228	83.768	0					35	19	2	0	0	0	0.18803	1	21843	21843		25.399	2.663	1	194390			43790	12702	25358	25359	53282	53282					0.0645952859136969
SLWALTVSL	9	Unmodified	_SLWALTVSL_					0	0	0		nc|ENSG00000133794|O00327-7|BMAL1	nc|ENSG00000133794|O00327-7|BMAL1	nc|ENSG00000133794|O00327-7|BMAL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2868347167969	2	495.286943	988.559333	0.57375	0.00028417	-0.44497	-0.00022039	0.12878	6.3781E-05	495.28667355153834	83.365	0.5479	83.438	83.21	83.758	0.073097					34	20	2	0	0	0	0.23007	1	21845	21845		19.257	2.1441	1	207590			43791	12702	25358	25359	53283	53283					0.0645952859136969
SLWCGHSPC	9	Unmodified	_SLWCGHSPC_					0	0	0			REV__ENST00000586922.2_1_18:32864420-32870144:-|nuORF	REV__ENST00000586922.2_1_18:32864420-32870144:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7846374511719	2	495.20203	988.389507	0.55572	0.0002752	-0.18069	-8.948E-05	0.37503	0.00018572	495.2019042467251	44.975	1.3393	45.044	44.174	45.514	0.068569					82	48	2	0	0	0	0.25526	1	10085	10085		4.3292	2.485	1	361910	+		43792	22526	25359	25360	53284	53284					-0.10515233954345149
SLWEMTSSLI	10	Unmodified	_SLWEMTSSLI_					0	0	0		ENST00000377191.4_1_20:21314390-21314468:+|nuORF	ENST00000377191.4_1_20:21314390-21314468:+|nuORF	ENST00000377191.4_1_20:21314390-21314468:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.7935180664062	2	583.791732	1165.56891	0.022292	1.3014E-05	2.5233	0.0014731	2.5456	0.0014861	583.7935879178184	46.09	0.4143	46.15	45.951	46.365	0.059837					28	14	3	0	0	0	0.23848	1	10364	10364		37.974	3.8716	1	545890			43793	9930	25360	25361	53285	53285					-0.00725071185388515
SLWEMTSSLI	10	Unmodified	_SLWEMTSSLI_					0	0	0		ENST00000377191.4_1_20:21314390-21314468:+|nuORF	ENST00000377191.4_1_20:21314390-21314468:+|nuORF	ENST00000377191.4_1_20:21314390-21314468:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	583.791732	1165.56891	0.34277	0.00020011	2.1391	0.0012488	2.4819	0.0014489	583.7932269530647	46.207	0.49866	46.272	45.925	46.424	0.065048	0.037104	-0.0003118	NaN	37.974	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432410			43794	9930	25360	25361							-0.00725071185388515
SLWKPKLVV	9	Unmodified	_SLWKPKLVV_					0	0	0		Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|173|2|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|173|2|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|173|2|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.3442993164062	2	535.342052	1068.66955	0.46777	0.00025042	2.3607	0.0012638	2.8285	0.0015142	535.3441430844098	38.306	0.78048	38.403	37.953	38.733	0.097527					86	27	4	0	0	0	0.31763	1	7980	7980		6.2058	1.8765	1	612170			43795	12383	25361	25362	53286	53286					0.13796373650416172
SLWNEWCWK	9	Unmodified	_SLWNEWCWK_					0	0	0			REV__L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|41|1|sense	REV__L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|41|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.55804443359375	3	417.858698	1250.55426	-0.13294	-5.5548E-05	2.2331	0.00093311	2.1001	0.00087756	417.8593488903193	15.344	0.26648	15.28	15.158	15.424	-0.064414					12	8	2	0	0	0	0.2615	1	1019	1019		2.4985	0.59211	1	24664	+		43796	22809	25362	25363	53287	53287					-0.060990985429043576
SLWSLVVIL	9	Unmodified	_SLWSLVVIL_					0	0	0			REV__nc|ENSG00000109738|P48167-2|GLRB	REV__nc|ENSG00000109738|P48167-2|GLRB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7415161132812	2	515.320786	1028.62702	0.084778	4.3688E-05	-0.54202	-0.00027932	-0.45724	-0.00023563	515.3203689570391	67.515	0.54826	67.499	67.236	67.785	-0.016296					24	18	2	0	0	0	0.2451	1	16921	16921		10.824	0	1	166390	+		43797	14650	25363	25364	53288	53288					0.11384978522187339
SLWSRMHFF	9	Unmodified	_SLWSRMHFF_					0	0	0		nc|ENSG00000165164|Q6ZTR5-6|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	nc|ENSG00000165164|Q6ZTR5-6|CFAP47	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2637023925781	3	404.199054	1209.57533	-0.32691	-0.00013214	-0.56878	-0.0002299	-0.89569	-0.00036204	404.19885160801175	42.7	0.51534	42.791	42.607	43.123	0.091362					37	18	3	0	0	0	0.25949	1	9259	9259		0.96228	0	1	415410			43798	12812	25364	25365	53289	53289					-0.021070884433811443
SLWWWRLHKF	10	Unmodified	_SLWWWRLHKF_					0	0	0			REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF	REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.9317626953125	3	486.931296	1457.77206	0.017108	8.3305E-06	0.83948	0.00040877	0.85659	0.0004171	486.931712567341	30.014	0.72039	30.041	29.728	30.448	0.027157					56	24	4	0	0	0	0.38745	1	5428	5428		5.7834	1.6668	1	415990	+		43799	22448	25365	25366	53290	53290					0.06148459441851628
SLWYIIGIQF	10	Unmodified	_SLWYIIGIQF_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5264892578125	3	413.897258	1238.66995	-0.18101	-7.492E-05	-3.1426	-0.0013007	-3.3236	-0.0013756	413.8960811839362	25.156	0.48638	25.125	24.833	25.319	-0.03141					28	16	2	0	0	0	0.31691	1	3926	3926		5.4027	0.99656	1	41831			43800	5096	25366	25367	53291	53291					0.06015748579602587
SLYAHGYLK	9	Unmodified	_SLYAHGYLK_					0	0	0		nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10	nc|ENSG00000182872|P98175-4|RBM10	nc|ENSG00000182872|P98175-4|RBM10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3617553710938	2	526.282192	1050.54983	0.53005	0.00027895	0.22528	0.00011856	0.75533	0.00039752	526.2824712929847	30.44	0.25579	30.468	30.324	30.58	0.027946					15	8	2	0	0	0	0.25202	1	5584	5584		10.824	2.2306	1	61589			43801	7329	25367	25368	53292	53292					0.026577603058285604
SLYEEAQKF	9	Unmodified	_SLYEEAQKF_					0	0	0			REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7736206054688	2	557.774396	1113.53424	0.30472	0.00016997	-1.2829	-0.00071554	-0.97813	-0.00054558	557.7735431093987	67.603	0.83492	67.603	67.135	67.97	0					60	28	3	0	0	0	0.16284	1	16991	16991		37.974	0	1	927690	+		43802	15304	25368	25369	53293	53293					-0.017985710018592727
SLYEEAQKF	9	Unmodified	_SLYEEAQKF_					0	0	0			REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7734375	2	557.774396	1113.53424	0.16917	9.4359E-05	-1.1351	-0.00063312	-0.9659	-0.00053876	557.7736761696061	67.59	0.80634	67.574	67.21	68.017	-0.016296					62	27	3	0	0	0	0.10197	2	16955	16955;17008		37.974	0	1	908760	+		43803	15304	25368	25369	53294;53295	53294					-0.017985710018592727
SLYEEAQKF	9	Unmodified	_SLYEEAQKF_					0	0	0			REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	557.774396	1113.53424	0.40125	0.0002238	-1.3626	-0.00076003	-0.96137	-0.00053623	557.7735640027809	67.472	0.85636	67.55	67.04	67.897	0.078041	-0.025771	-9.2674E-05	NaN	37.974	63	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	775450	+		43804	15304	25368	25369							-0.017985710018592727
SLYEEAQKF	9	Unmodified	_SLYEEAQKF_					0	0	0			REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	REV__nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	557.774396	1113.53424	0.16917	9.4359E-05	-1.1351	-0.00063312	-0.9659	-0.00053876	557.7736761696061	67.59	0.80634	67.574	67.21	68.017	-0.016296	-0.0014661	0.00016116	NaN	37.974	62	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	908760	+		43805	15304	25368	25369							-0.017985710018592727
SLYELVQNS	9	Unmodified	_SLYELVQNS_					0	0	0			REV__ENSG00000145723|ENST00000399004|GIN1	REV__ENSG00000145723|ENST00000399004|GIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3024291992188	2	526.766571	1051.51859	0.30499	0.00016066	-3.8494	-0.0020277	-3.5444	-0.0018671	527.2663261906263	67.029	0.63123	67.014	66.763	67.394	-0.01535					34	21	3	0	0	0	0.17611	1	16857	16857		26.884	3.7352	1	86544	+		43806	16301	25369	25370	53296	53296					-0.005108575189069597
SLYGFFLFLWF	11	Unmodified	_SLYGFFLFLWF_					0	0	0		ENSG00000159618|ENST00000349457|ADGRG5	ENSG00000159618|ENST00000349457|ADGRG5	ENSG00000159618|ENST00000349457|ADGRG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2611999511719	3	480.584792	1438.73255	0.52414	0.00025189	1.374	0.00066032	1.8981	0.00091221	480.9197406809996	21.032	0.54181	20.922	20.637	21.178	-0.11003					35	18	3	0	0	0	0.32719	1	2796	2796		14.218	11.375	1	89004			43807	5417	25370	25371	53297	53297					0.03072894647789326
SLYHEETI	8	Unmodified	_SLYHEETI_					0	0	0		ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2518310546875	2	496.24019	990.465826	0.37926	0.00018821	-0.62502	-0.00031016	-0.24575	-0.00012195	496.23981747687645	24.803	0.52499	24.803	24.486	25.011	0					27	17	2	0	0	0	0.34408	1	3777	3777		2.3027	0	1	67925			43808	8466	25371	25372	53298	53298					-0.029788155817072948
SLYHEETI	8	Unmodified	_SLYHEETI_					0	0	0		ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	496.24019	990.465826	0.30073	0.00014923	-0.60772	-0.00030157	-0.30699	-0.00015234	496.23985856562376	24.908	0.38686	24.852	24.661	25.048	-0.055931	0.0297	-0.00016638	NaN	2.3027	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90368			43809	8466	25371	25372							-0.029788155817072948
SLYHEETI	8	Unmodified	_SLYHEETI_					0	0	0		ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	496.24019	990.465826	0.059077	2.9316E-05	-0.24018	-0.00011919	-0.18111	-8.9872E-05	496.24014839542735	24.844	0.42182	24.812	24.599	25.021	-0.031408	-0.010243	0.00019838	NaN	2.3027	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92268			43810	8466	25371	25372							-0.029788155817072948
SLYIVFLHN	9	Unmodified	_SLYIVFLHN_					0	0	0			REV__ENST00000367405.4_1_1:197169326-197169371:-|nuORF	REV__ENST00000367405.4_1_1:197169326-197169371:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8046875	2	553.305667	1104.59678	0.17559	9.7156E-05	0.48723	0.00026958	0.66282	0.00036674	553.3060245922672	23.519	0.52469	23.519	23.362	23.887	0					21	17	2	0	0	0	0.26168	1	3471	3471		1.8442	0	1	44002	+		43811	20311	25372	25373	53299	53299					0.048666198569890184
SLYKEQEKQR	10	Unmodified	_SLYKEQEKQR_					0	0	0			REV__nc|ENSG00000100490|Q00532-2|CDKL1	REV__nc|ENSG00000100490|Q00532-2|CDKL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.8944396972656	3	436.901731	1307.68336	-0.22419	-9.795E-05	2.1319	0.00093143	1.9077	0.00083348	437.23711556270035	19.273	0.47966	19.273	18.895	19.375	0					20	16	2	0	0	0	0.3994	1	2184	2184		3.5871	0	1	43109	+		43812	22912	25373	25374	53300	53300					0.04182954620887358
SLYKEQEKQR	10	Unmodified	_SLYKEQEKQR_					0	0	0			REV__nc|ENSG00000100490|Q00532-2|CDKL1	REV__nc|ENSG00000100490|Q00532-2|CDKL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	436.901731	1307.68336	-0.22419	-9.795E-05	2.1319	0.00093143	1.9077	0.00083348	437.23711556270035	19.273	0.47966	19.273	18.895	19.375	0	0	0	NaN	3.5871	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43109	+		43813	22912	25373	25374							0.04182954620887358
SLYKHHVV	8	Unmodified	_SLYKHHVV_					0	0	0		nc|ENSG00000166478|P52747-3|ZNF143;nc|ENSG00000166478|P52747-2|ZNF143;ENSG00000166478|ENST00000396602|ZNF143;ENST00000229405.8_1_6:35260320-35261695:+|nuORF;nc|ENSG00000065029|P36508-2|ZNF76;ENSG00000065029|ENST00000373953|ZNF76	nc|ENSG00000166478|P52747-3|ZNF143	nc|ENSG00000166478|P52747-3|ZNF143	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.29736328125	2	491.777077	981.5396	-1.0461	-0.00051444	0.45838	0.00022542	-0.58769	-0.00028901	491.777183790733	34.954	0.44965	34.954	34.751	35.2	0					22	15	2	0	0	0	0.34185	1	6964	6964		10.183	0	1	129110			43814	12818	25374	25375	53301	53301					0.04809197371287155
SLYKRKYPIA	10	Unmodified	_SLYKRKYPIA_					0	0	0			REV__nc|ENSG00000054219|O60449-3|LY75	REV__nc|ENSG00000054219|O60449-3|LY75	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8690185546875	2	619.866423	1237.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.275	1	94.359	93.859	94.859	0.083572								0	0	0	0.3773	1	25140	25140		3.2813	0	1		+		43815	22885	25375	25376	53302	53302					0.1089424221952413
SLYKTAVII	9	Unmodified	_SLYKTAVII_					0	0	0		ENST00000482826.1_1_2:55795287-55800821:-|nuORF	ENST00000482826.1_1_2:55795287-55800821:-|nuORF	ENST00000482826.1_1_2:55795287-55800821:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.3194580078125	2	504.310418	1006.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.208	1	81.184	80.684	81.684	-0.02404								0	0	0	0.22789	1	21126	21126		13.508	0.97634	1				43816	11052	25376	25377	53303	53303					0.10324388142532825
SLYLISDLK	9	Unmodified	_SLYLISDLK_					0	0	0		ENST00000552056.5_1_12:76449931-76453949:-|nuORF;ENST00000552147.5_3_12:76449934-76453979:-|nuORF;ENST00000549988.5_1_12:76453531-76453949:-|nuORF	ENST00000552056.5_1_12:76449931-76453949:-|nuORF	ENST00000552056.5_1_12:76449931-76453949:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7440185546875	2	526.305332	1050.59611	-0.053256	-2.8029E-05	0.43	0.00022631	0.37674	0.00019828	526.3054996808074	60.284	0.34547	60.379	60.077	60.422	0.095093					18	12	2	0	0	0	0.152	1	14667	14667		37.075	2.1426	1	301110			43817	11790	25377	25378	53304	53304					0.07283780417265007
SLYLISDLK	9	Unmodified	_SLYLISDLK_					0	0	0		ENST00000552056.5_1_12:76449931-76453949:-|nuORF;ENST00000552147.5_3_12:76449934-76453979:-|nuORF;ENST00000549988.5_1_12:76453531-76453949:-|nuORF	ENST00000552056.5_1_12:76449931-76453949:-|nuORF	ENST00000552056.5_1_12:76449931-76453949:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7439575195312	2	526.305332	1050.59611	0.43676	0.00022987	0.18519	9.7466E-05	0.62195	0.00032734	526.3053447876654	60.374	0.35031	60.363	60.108	60.459	-0.011486					17	12	2	0	0	0	0.22701	1	14688	14688		23.79	2.2528	1	395270			43818	11790	25377	25378	53305	53305					0.07283780417265007
SLYLISDLK	9	Unmodified	_SLYLISDLK_					0	0	0		ENST00000552056.5_1_12:76449931-76453949:-|nuORF;ENST00000552147.5_3_12:76449934-76453979:-|nuORF;ENST00000549988.5_1_12:76453531-76453949:-|nuORF	ENST00000552056.5_1_12:76449931-76453949:-|nuORF	ENST00000552056.5_1_12:76449931-76453949:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	526.305332	1050.59611	0.2955	0.00015552	-0.38798	-0.0002042	-0.092488	-4.8677E-05	526.3050452955413	60.309	0.23948	60.309	60.202	60.441	0	-0.040859	-0.00044334	NaN	37.075	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216430			43819	11790	25377	25378							0.07283780417265007
SLYMRPEVVN	10	Unmodified	_SLYMRPEVVN_					0	0	0			REV__nc|ENSG00000169876|Q685J3-2|MUC17	REV__nc|ENSG00000169876|Q685J3-2|MUC17	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.22186279296875	3	403.209508	1206.60669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.829	1	17.769	17.269	18.269	-0.060429								0	0	0	0.37044	1	1747	1747		3.3196	0	1		+		43820	17546	25378	25379	53306	53306					0.011654398000700894
SLYNFLIQT	9	Unmodified	_SLYNFLIQT_					0	0	0			REV__ENSG00000138381|ENST00000260952|ASNSD1	REV__ENSG00000138381|ENST00000260952|ASNSD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2782592773438	2	549.795132	1097.57571	0.47638	0.00026191	-0.099633	-5.4778E-05	0.37675	0.00020713	550.29619495485	70.657	2.3366	70.717	70.351	72.688	0.060783					232	84	5	0	0	0	0.23612	1	18341	18341		18.373	1.2602	1	29892000	+		43821	15926	25379	25380	53307	53307					0.030826097574845335
SLYPGSFLL	9	Unmodified	_SLYPGSFLL_					0	0	0			REV__ENSG00000182687|ENST00000329003|GALR2	REV__ENSG00000182687|ENST00000329003|GALR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.774169921875	2	498.773668	995.532783	0.69956	0.00034892	1.085	0.00054118	1.7846	0.0008901	498.77405299623103	74.504	0.86805	74.504	74.286	75.154	0					62	30	3	0	0	0	0.11517	1	19137	19137		36.044	0	1	1075600	+		43822	18210	25380	25381	53308	53308					0.03483839700061253
SLYPGSFLL	9	Unmodified	_SLYPGSFLL_					0	0	0			REV__ENSG00000182687|ENST00000329003|GALR2	REV__ENSG00000182687|ENST00000329003|GALR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2772216796875	2	498.773668	995.532783	0.35485	0.00017699	1.5165	0.00075637	1.8713	0.00093336	498.7742002144892	74.494	0.70215	74.547	74.296	74.998	0.052361					62	24	3	0	0	0	0.11517	1	19168	19168		36.044	0	1	1073000	+		43823	18210	25380	25381	53309	53309					0.03483839700061253
SLYPSLEDLK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SLYPSLEDLK_					1	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF;ENSG00000125775|ENST00000360779|SDCBP2	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.8164672851562	2	603.816261	1205.61797	0.60989	0.00036826	0.081111	4.8976E-05	0.691	0.00041724	603.8160201004396	75.218	0.52342	75.187	74.868	75.391	-0.031487					38	19	3	0	0	0	0.10152	1	19310	19310		47.732	16.464	1	296750			43824	4062	25381	25382	53310	53310					0.023385403751944978
SLYRDRRREI	10	Unmodified	_SLYRDRRREI_					0	0	0			REV__nc|ENSG00000131748|Q14849-2|STARD3	REV__nc|ENSG00000131748|Q14849-2|STARD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2488098144531	3	455.25662	1362.74803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.964	1	46.024	45.524	46.524	0.059834								0	0	0	0.35308	1	10314	10314		13.519	3.9747	1		+		43825	15533	25382	25383	53311	53311					0.08116574217547168
SLYRHFTNTL	10	Unmodified	_SLYRHFTNTL_					0	0	0		nc|ENSG00000103978|Q8NBN3-3|TMEM87A;ENSG00000103978|ENST00000389834|TMEM87A;ENST00000562946.5_1_15:42519884-42565596:-|nuORF;ENST00000564329.1_1_15:42518966-42520994:-|nuORF	nc|ENSG00000103978|Q8NBN3-3|TMEM87A	nc|ENSG00000103978|Q8NBN3-3|TMEM87A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.2662658691406	3	417.887533	1250.64077	0.29696	0.0001241	-0.48574	-0.00020299	-0.18878	-7.889E-05	418.2216473191971	40.724	0.39535	40.816	40.585	40.98	0.09267					21	14	2	0	0	0	0.31746	1	8742	8742		6.1918	1.4759	1	149230			43826	1858	25383	25384	53312	53312					0.025476042833361134
SLYRKTLDSF	10	Unmodified	_SLYRKTLDSF_					0	0	0		ENSG00000148841|ENST00000337478|ITPRIP	ENSG00000148841|ENST00000337478|ITPRIP	ENSG00000148841|ENST00000337478|ITPRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.555419921875	3	410.555672	1228.64519	0.17948	7.3685E-05	-0.21573	-8.8567E-05	-0.036249	-1.4882E-05	410.5554730679611	29.628	0.64474	29.64	29.443	30.088	0.012266					60	21	4	0	0	0	0.38952	1	5337	5337		5.4027	0.99656	1	252250			43827	4832	25384	25385	53313	53313					0.04001068706224942
SLYSIVWFLSP	11	Unmodified	_SLYSIVWFLSP_					0	0	0		nc|ENSG00000164175|Q9UMX9-4|SLC45A2;nc|ENSG00000164175|Q9UMX9-3|SLC45A2;ENSG00000164175|ENST00000296589|SLC45A2;SLC45A2|p.I271Rfs*8|1|0.17|ENSG00000164175|chr5:33963769-33963772|AGAA/-|frameshift_variant;nc|ENSG00000164175|Q9UMX9-2|SLC45A2	nc|ENSG00000164175|Q9UMX9-4|SLC45A2	nc|ENSG00000164175|Q9UMX9-4|SLC45A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.9033508300781	3	437.904301	1310.69108	-0.25977	-0.00011375	-1.1661	-0.00051062	-1.4258	-0.00062438	438.23815151528225	28.282	1.0016	28.282	27.896	28.898	0					93	34	4	0	0	0	0.44966	1	4908	4908		4.7159	0.30977	1	488840			43828	5804	25385	25386	53314	53314					0.048157138884789674
SLYSNWIV	8	Unmodified	_SLYSNWIV_					0	0	0			REV__ENSG00000115204|ENST00000380044|MPV17	REV__ENSG00000115204|ENST00000380044|MPV17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.8113098144531	2	491.255643	980.496732	0.14487	7.1171E-05	1.1698	0.00057466	1.3147	0.00064583	491.2563801699364	42.754	0.2728	42.754	42.543	42.816	0					10	9	2	0	0	0	0.34092	1	9276	9276		8.5933	3.8373	1	87028	+		43829	14864	25386	25387	53315	53315					0.005703825231876181
SLYSVPEGQSK	11	Unmodified	_SLYSVPEGQSK_					0	0	0		nc|ENSG00000184831|Q9BUR5-2|APOO;ENSG00000184831|ENST00000379226|APOO	nc|ENSG00000184831|Q9BUR5-2|APOO	nc|ENSG00000184831|Q9BUR5-2|APOO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8027954101562	2	597.803685	1193.59282	-1.0018	-0.00059885	-0.67392	-0.00040287	-1.6757	-0.0010017	597.8031234942324	34.785	0.55525	34.785	34.588	35.144	0					42	19	3	0	0	0	0.36569	1	6949	6949		15.739	0	1	436520			43830	7475	25387	25388	53316	53316					0.003764855726103633
SLYSVPEGQSK	11	Unmodified	_SLYSVPEGQSK_					0	0	0		nc|ENSG00000184831|Q9BUR5-2|APOO;ENSG00000184831|ENST00000379226|APOO	nc|ENSG00000184831|Q9BUR5-2|APOO	nc|ENSG00000184831|Q9BUR5-2|APOO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.2581787109375	2	597.803685	1193.59282	-1.1432	-0.00068339	-0.60403	-0.00036109	-1.7472	-0.0010445	597.8030880577879	34.689	0.54836	34.764	34.549	35.097	0.075306					43	19	3	0	0	0	0.31256	1	6846	6846		18.721	0	1	372610			43831	7475	25387	25388	53317	53317					0.003764855726103633
SLYSVPEGQSK	11	Unmodified	_SLYSVPEGQSK_					0	0	0		nc|ENSG00000184831|Q9BUR5-2|APOO;ENSG00000184831|ENST00000379226|APOO	nc|ENSG00000184831|Q9BUR5-2|APOO	nc|ENSG00000184831|Q9BUR5-2|APOO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.2579345703125	2	597.803685	1193.59282	-0.39367	-0.00023534	-1.1786	-0.00070456	-1.5722	-0.0009399	597.802742747172	34.671	0.58299	34.749	34.533	35.116	0.077377					45	20	3	0	0	0	0.29849	1	6847	6847		28.234	3.3521	1	413860			43832	7475	25387	25388	53318	53318					0.003764855726103633
SLYVFNPIF	9	Unmodified	_SLYVFNPIF_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7828369140625	2	550.294768	1098.57498	0.80103	0.0004408	-1.9787	-0.0010889	-1.1777	-0.00064807	550.7952931009845	48.514	0.40726	48.562	48.285	48.693	0.047523					17	14	2	0	0	0	0.24311	1	11079	11079		16.942	10.737	1	280990			43833	3320	25388	25389	53319	53319					0.029638151084100173
SLYVGKKYL	9	Unmodified	_SLYVGKKYL_					0	0	0			REV__nc|ENSG00000073737|Q9BPW9-4|DHRS9	REV__nc|ENSG00000073737|Q9BPW9-4|DHRS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.277587890625	2	535.815867	1069.61718	0.35853	0.00019211	1.3869	0.00074312	1.7454	0.00093522	535.8169175311492	40.725	0.34898	40.825	40.641	40.99	0.099403					30	12	3	0	0	0	0.21905	1	8651	8651		16.942	3.8998	1	315040	+		43834	22897	25389	25390	53320	53320					0.08515790516798916
SLYWYIYYYEH	11	Unmodified	_SLYWYIYYYEH_					0	0	0			REV__NAA35|p.K567Rfs*6|1|0.45|ENSG00000135040|chr9:86016663-86016663|A/-|frameshift_variant	REV__NAA35|p.K567Rfs*6|1|0.45|ENSG00000135040|chr9:86016663-86016663|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.31201171875	3	533.910004	1598.70818	0.37325	0.00019928	-0.45372	-0.00024225	-0.080472	-4.2965E-05	534.244203684907	16.491	0.39194	16.491	16.214	16.606	0					23	13	2	0	0	0	0.33351	1	1375	1375		0.094841	0.094841	1	37166	+		43835	15716	25390	25391	53321	53321					-0.06722410296401904
SLYWYIYYYEH	11	Unmodified	_SLYWYIYYYEH_					0	0	0			REV__NAA35|p.K567Rfs*6|1|0.45|ENSG00000135040|chr9:86016663-86016663|A/-|frameshift_variant	REV__NAA35|p.K567Rfs*6|1|0.45|ENSG00000135040|chr9:86016663-86016663|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.324462890625	3	533.910004	1598.70818	0.13386	7.1472E-05	-0.45169	-0.00024116	-0.31782	-0.00016969	534.2440006620415	16.603	0.39194	16.489	16.275	16.667	-0.11434					26	13	3	0	0	0	0.33352	1	1317	1317		0	0	1	48465	+		43836	15716	25390	25391	53322	53322					-0.06722410296401904
SLYYIRKP	8	Unmodified	_SLYYIRKP_					0	0	0			REV__ENSG00000068976|ENST00000164139|PYGM	REV__ENSG00000068976|ENST00000164139|PYGM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7578735351562	2	520.300384	1038.58622	-0.20891	-0.0001087	0.21523	0.00011198	0.0063165	3.2865E-06	520.3004222367101	59.883	0.493	59.978	59.687	60.18	0.095093					28	17	2	0	0	0	0.31088	1	14633	14633		28.487	15.955	1	714860	+		43837	13709	25391	25392	53323	53323					0.06846637202556849
SLYYPDSLF	9	Unmodified	_SLYYPDSLF_					0	0	0		ENSG00000164463|ENST00000296953|CREBRF;nc|ENSG00000164463|Q8IUR6-3|CREBRF;nc|ENSG00000164463|Q8IUR6-2|CREBRF;ENST00000520464.1_1_5:172507634-172535847:+|nuORF	ENSG00000164463|ENST00000296953|CREBRF	ENSG00000164463|ENST00000296953|CREBRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7667846679688	2	552.76604	1103.51753	0.54753	0.00030266	-1.2503	-0.00069113	-0.70278	-0.00038847	552.765675732657	85.947	1.0229	85.947	85.256	86.279	0					69	38	3	0	0	0	0.22188	1	22639	22639		20.454	4.6064	1	790840			43838	5846	25392	25393	53324	53324					-0.030090718878227563
SLYYPDSLF	9	Unmodified	_SLYYPDSLF_					0	0	0		ENSG00000164463|ENST00000296953|CREBRF;nc|ENSG00000164463|Q8IUR6-3|CREBRF;nc|ENSG00000164463|Q8IUR6-2|CREBRF;ENST00000520464.1_1_5:172507634-172535847:+|nuORF	ENSG00000164463|ENST00000296953|CREBRF	ENSG00000164463|ENST00000296953|CREBRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.765625	2	552.76604	1103.51753	0.51891	0.00028683	-1.4914	-0.00082437	-0.97245	-0.00053754	552.7655428291109	85.944	1.1269	85.935	85.327	86.454	-0.0090027					84	42	3	0	0	0	0.17787	1	22549	22549		26.884	1.4843	1	695310			43839	5846	25392	25393	53325	53325					-0.030090718878227563
SMAYTPHRC	9	Unmodified	_SMAYTPHRC_					0	0	0		ARSJ|p.N234Sfs*18|1|0.07|ENSG00000180801|chr4:113903373-113903374|-/GC|frameshift_variant	ARSJ|p.N234Sfs*18|1|0.07|ENSG00000180801|chr4:113903373-113903374|-/GC|frameshift_variant	ARSJ|p.N234Sfs*18|1|0.07|ENSG00000180801|chr4:113903373-113903374|-/GC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2343139648438	2	533.233861	1064.45317	0.63832	0.00034037	0.66314	0.00035361	1.3015	0.00069398	533.2340114390321	91.894	0.79607	91.894	91.636	92.433	0.00047302					106	51	5	0	0	0	0.33276	1	24451	24451		3.9444	3.9444	1	401260			43840	57	25393	25394	53326	53326					-0.07647873517248627
SMAYTPHRC	9	Unmodified	_SMAYTPHRC_					0	0	0		ARSJ|p.N234Sfs*18|1|0.07|ENSG00000180801|chr4:113903373-113903374|-/GC|frameshift_variant	ARSJ|p.N234Sfs*18|1|0.07|ENSG00000180801|chr4:113903373-113903374|-/GC|frameshift_variant	ARSJ|p.N234Sfs*18|1|0.07|ENSG00000180801|chr4:113903373-113903374|-/GC|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	533.233861	1064.45317	0.45852	0.0002445	0.86645	0.00046202	1.325	0.00070652	533.2341709749419	91.947	0.65842	91.947	91.662	92.32	0	0.043125	1.0948E-05	NaN	3.9444	70	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161880			43841	57	25393	25394							-0.07647873517248627
SMAYTPHRC	9	Unmodified	_SMAYTPHRC_					0	0	0		ARSJ|p.N234Sfs*18|1|0.07|ENSG00000180801|chr4:113903373-113903374|-/GC|frameshift_variant	ARSJ|p.N234Sfs*18|1|0.07|ENSG00000180801|chr4:113903373-113903374|-/GC|frameshift_variant	ARSJ|p.N234Sfs*18|1|0.07|ENSG00000180801|chr4:113903373-113903374|-/GC|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	533.233861	1064.45317	0.34861	0.00018589	1.0337	0.00055123	1.3824	0.00073712	533.234279748499	91.78	0.67062	91.871	91.61	92.281	0.090668	-0.033417	0.00018936	NaN	3.9444	66	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282520			43842	57	25393	25394							-0.07647873517248627
SMAYTPHRC	9	Unmodified	_SMAYTPHRC_					0	0	0		ARSJ|p.N234Sfs*18|1|0.07|ENSG00000180801|chr4:113903373-113903374|-/GC|frameshift_variant	ARSJ|p.N234Sfs*18|1|0.07|ENSG00000180801|chr4:113903373-113903374|-/GC|frameshift_variant	ARSJ|p.N234Sfs*18|1|0.07|ENSG00000180801|chr4:113903373-113903374|-/GC|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	533.233861	1064.45317	0.63832	0.00034037	0.66314	0.00035361	1.3015	0.00069398	533.2340114390321	91.894	0.79607	91.894	91.636	92.433	0.00047302	-0.0097075	-0.00020587	NaN	3.9444	106	51	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	401260			43843	57	25393	25394							-0.07647873517248627
SMCVKTTIEK	10	Unmodified	_SMCVKTTIEK_					0	0	0			REV__nc|ENSG00000162946|Q9NRI5-9|DISC1	REV__nc|ENSG00000162946|Q9NRI5-9|DISC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8238525390625	2	570.293585	1138.57262	-0.038866	-2.2165E-05	-0.18914	-0.00010787	-0.22801	-0.00013003	570.293557490516	15.235	0.35007	15.171	15.041	15.391	-0.064413					17	11	2	0	0	0	0.32072	1	938	938		2.9952	0.93549	1	61838	+		43844	17024	25394	25395	53327	53327					0.008872753168134295
SMELQRQREA	10	Unmodified	_SMELQRQREA_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3124389648438	2	624.311686	1246.60882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.79	1	83.773	83.273	84.273	-0.016823								0	0	0	0.36832	1	21922	21922		7.1017	0.89594	1		+		43845	18023	25395	25396	53328	53328					-0.0046213146213176515
SMFQWRLVC	9	Unmodified	_SMFQWRLVC_					0	0	0			REV__nc|ENSG00000100003|O76054-5|SEC14L2	REV__nc|ENSG00000100003|O76054-5|SEC14L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.2830200195312	2	585.283354	1168.55216	0.030355	1.7766E-05	-1.1456	-0.00067049	-1.1152	-0.00065272	585.2831121435252	14.753	0.52719	14.687	14.455	14.982	-0.066053					61	18	4	0	0	0	0.33276	1	840	840		3.9444	2.1002	1	325950	+		43846	14148	25396	25397	53329	53329					-0.025378505523576678
SMFQWRLVC	9	Unmodified	_SMFQWRLVC_					0	0	0			REV__nc|ENSG00000100003|O76054-5|SEC14L2	REV__nc|ENSG00000100003|O76054-5|SEC14L2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	585.283354	1168.55216	-0.0052687	-3.0837E-06	-1.2125	-0.00070967	-1.2178	-0.00071276	585.2831825603135	14.726	0.56756	14.621	14.368	14.935	-0.10466	-0.023178	-1.9804E-05	NaN	3.9444	60	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355470	+		43847	14148	25396	25397							-0.025378505523576678
SMGSTTVRVS	10	Unmodified	_SMGSTTVRVS_					0	0	0		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.6748046875	2	512.758223	1023.50189	0.19713	0.00010108	0.52051	0.00026689	0.71764	0.00036797	513.2574641321643	25.535	0.4178	25.535	25.296	25.714	0					20	13	2	0	0	0	0.31847	1	4066	4066		6.7232	0.51738	1	43842			43848	4472	25397	25398	53330	53330					-0.008916816764894975
SMILFFIP	8	Unmodified	_SMILFFIP_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.25506591796875	2	484.269707	966.524861	0.29539	0.00014305	-0.84008	-0.00040683	-0.54469	-0.00026378	484.26912364139673	23.345	0.7047	23.3	23.109	23.814	-0.044867					34	24	2	0	0	0	0.4397	1	3402	3402		9.3474	0	1	47929			43849	1191	25398	25399	53331	53331					0.04025989178921918
SMKVEIFRSL	10	Unmodified	_SMKVEIFRSL_					0	0	0			REV__ENST00000462386.5_1_2:209112975-209118617:-|nuORF	REV__ENST00000462386.5_1_2:209112975-209118617:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.51495361328125	3	403.893519	1208.65873	-0.10566	-4.2675E-05	0.4691	0.00018947	0.36344	0.00014679	404.2275191809817	17.311	1.3997	17.25	16.444	17.844	-0.060429					65	49	2	0	0	0	0.31911	1	1354	1354		3.8763	3.8763	1	86229	+		43850	21231	25399	25400	53332	53332					0.06274603213842056
SMLLVLPF	8	Unmodified	_SMLLVLPF_					0	0	0		ENSG00000205497|ENST00000641898|OR51A4;ENSG00000205496|ENST00000380371|OR51A2	ENSG00000205497|ENST00000641898|OR51A4	ENSG00000205497|ENST00000641898|OR51A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.5713806152344	2	460.269707	918.524861	0.33896	0.00015601	3.2882	0.0015134	3.6271	0.0016695	460.2711733615258	38.733	0.38815	38.833	38.598	38.986	0.099407					21	13	2	0	0	0	0.34046	1	8130	8130		14.582	3.4672	1	170730			43851	8292	25400	25401	53333	53333					0.062339891789065405
SMLLVLPF	8	Unmodified	_SMLLVLPF_					0	0	0		ENSG00000205497|ENST00000641898|OR51A4;ENSG00000205496|ENST00000380371|OR51A2	ENSG00000205497|ENST00000641898|OR51A4	ENSG00000205497|ENST00000641898|OR51A4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	460.269707	918.524861	0.059727	2.7491E-05	3.8628	0.0017779	3.9225	0.0018054	460.2716185288468	38.766	0.42942	38.859	38.648	39.078	0.09267	0.013274	0.00018826	NaN	14.582	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140760			43852	8292	25400	25401							0.062339891789065405
SMLRKDETSGF	11	Unmodified	_SMLRKDETSGF_					0	0	0			REV__ENSG00000154736|ENST00000284987|ADAMTS5	REV__ENSG00000154736|ENST00000284987|ADAMTS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2070007324219	3	424.208055	1269.60234	-0.18494	-7.8455E-05	-1.6947	-0.00071891	-1.8797	-0.00079737	424.20716918364445	22.326	0.42807	22.326	22.105	22.533	0					26	14	3	0	0	0	0.46475	1	3131	3131		1.1098	0.096179	1	110030	+		43853	16675	25401	25402	53334	53334					-0.021680694135284284
SMLRKDETSGF	11	Unmodified	_SMLRKDETSGF_					0	0	0			REV__ENSG00000154736|ENST00000284987|ADAMTS5	REV__ENSG00000154736|ENST00000284987|ADAMTS5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	424.208055	1269.60234	-0.18494	-7.8455E-05	-1.6947	-0.00071891	-1.8797	-0.00079737	424.20716918364445	22.326	0.42807	22.326	22.105	22.533	0	0.020549	-2.9135E-06	NaN	1.1098	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110030	+		43854	16675	25401	25402							-0.021680694135284284
SMLRKDETSGF	11	Unmodified	_SMLRKDETSGF_					0	0	0			REV__ENSG00000154736|ENST00000284987|ADAMTS5	REV__ENSG00000154736|ENST00000284987|ADAMTS5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	424.208055	1269.60234	-0.2352	-9.9773E-05	-1.6735	-0.0007099	-1.9087	-0.00080967	424.2072601873765	22.364	0.66629	22.316	22.04	22.706	-0.047398	0.011341	2.4125E-05	NaN	1.1098	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67420	+		43855	16675	25401	25402							-0.021680694135284284
SMLVAIIFF	9	Unmodified	_SMLVAIIFF_					0	0	0			REV__HLA-DRA|p.T115Sfs*68|1|0.48|ENSG00000204287|chr6:32443200-32443201|CT/-|frameshift_variant	REV__HLA-DRA|p.T115Sfs*68|1|0.48|ENSG00000204287|chr6:32443200-32443201|CT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.278564453125	2	520.796089	1039.57763	1.0116	0.00052683	2.8846	0.0015023	3.8962	0.0020291	520.7968346937906	47.067	0.24918	47.121	47.006	47.256	0.054371					13	8	2	0	0	0	0.24311	1	10645	10645		16.942	2.104	1	323320	+		43856	18930	25402	25403	53335	53335					0.05941947241717571
SMMMAPGGP	9	Unmodified	_SMMMAPGGP_					0	0	0		nc|ENSG00000186174|Q86UU0-3|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;ENSG00000186174|ENST00000683865|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.751220703125	2	439.682084	877.349616	-0.2182	-9.5938E-05	1.0158	0.00044665	0.79765	0.00035071	439.68235454642723	14.262	0.56228	14.262	14.113	14.676	0					30	19	2	0	0	0	0.26117	1	676	676		2.3027	1.5091	1	33632			43857	7598	25403	25404	53336	53336					-0.09396496949261746
SMMMAPGGP	9	Unmodified	_SMMMAPGGP_					0	0	0		nc|ENSG00000186174|Q86UU0-3|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;ENSG00000186174|ENST00000683865|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.75115966796875	2	439.682084	877.349616	-0.22302	-9.8057E-05	0.81241	0.0003572	0.58939	0.00025914	439.6823404209468	14.405	0.35921	14.339	14.124	14.483	-0.066068					20	12	2	0	0	0	0.26117	1	707	707		2.3027	2.3027	1	35687			43858	7598	25403	25404	53337	53337					-0.09396496949261746
SMMMAPGGP	9	Unmodified	_SMMMAPGGP_					0	0	0		nc|ENSG00000186174|Q86UU0-3|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;ENSG00000186174|ENST00000683865|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	439.682084	877.349616	-0.23633	-0.00010391	0.97964	0.00043073	0.74331	0.00032682	439.68238211577005	14.283	0.51326	14.178	14.079	14.592	-0.10466	-0.081485	4.7994E-05	NaN	2.3027	24	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41161			43859	7598	25403	25404							-0.09396496949261746
SMMRNFFTR	9	2 Oxidation (M)	_SM(Oxidation (M))M(Oxidation (M))RNFFTR_		SM(1)M(1)RNFFTR		SM(95)M(95)RNFFTR	0	0	2		ENSG00000138061|ENST00000610745|CYP1B1;CYP1B1|p.P253Rfs*25|1|0.16|ENSG00000138061|chr2:38074631-38074631|G/-|frameshift_variant	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.8551025390625	3	407.854959	1220.54305	-0.38468	-0.00015689	-0.48969	-0.00019972	-0.87437	-0.00035661	407.8550786833385	27.866	1.504	27.866	27.474	28.978	0					162	52	6	0	0	0	0.0039426	4	4800	4710;4759;4800;4843		94.801	77.752	1	5368200			43860	4110	25404	25405	53338;53339;53340;53341	53340		523;524			-0.05840243908687626
SMMRNFFTR	9	2 Oxidation (M)	_SM(Oxidation (M))M(Oxidation (M))RNFFTR_		SM(1)M(1)RNFFTR		SM(100)M(100)RNFFTR	0	0	2		ENSG00000138061|ENST00000610745|CYP1B1;CYP1B1|p.P253Rfs*25|1|0.16|ENSG00000138061|chr2:38074631-38074631|G/-|frameshift_variant	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.8551330566406	3	407.854959	1220.54305	-0.32627	-0.00013307	-0.44301	-0.00018068	-0.76928	-0.00031375	407.8550669352282	27.838	1.47	27.816	27.411	28.881	-0.021412					176	51	5	0	0	0	0.0031452	3	4810	4720;4764;4810		101.12	84.067	1	5999600			43861	4110	25404	25405	53342;53343;53344	53344		523;524			-0.05840243908687626
SMMRNFFTR	9	2 Oxidation (M)	_SM(Oxidation (M))M(Oxidation (M))RNFFTR_		SM(1)M(1)RNFFTR		SM(99)M(99)RNFFTR	0	0	2		ENSG00000138061|ENST00000610745|CYP1B1;CYP1B1|p.P253Rfs*25|1|0.16|ENSG00000138061|chr2:38074631-38074631|G/-|frameshift_variant	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.8548278808594	3	407.854959	1220.54305	-0.39632	-0.00016164	-0.38455	-0.00015684	-0.78087	-0.00031848	407.8551590691475	27.83	1.5521	27.83	27.419	28.971	0.00013542					169	54	5	0	0	0	0.0034586	3	4767	4719;4767;4810		98.634	78.647	1	6969800			43862	4110	25404	25405	53345;53346;53347	53346		523;524			-0.05840243908687626
SMNTRSRTTRS	11	Unmodified	_SMNTRSRTTRS_					0	0	0			REV__nc|ENSG00000137337|Q14676-2|MDC1	REV__nc|ENSG00000137337|Q14676-2|MDC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.8852233886719	3	432.886087	1295.63643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.866	1	17.749	17.249	18.249	-0.11739								0	0	0	0.36872	1	1761	1761		4.1166	0.27072	1		+		43863	15855	25405	25406	53348	53348					0.00043771798095804115
SMQQLEQW	8	Unmodified	_SMQQLEQW_					0	0	0		nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;ENST00000510738.2_1_12:19413894-19459437:+|nuORF	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3031005859375	2	525.239667	1048.46478	0.33218	0.00017448	-1.5339	-0.00080566	-1.2017	-0.00063119	525.2384602857362	26.26	0.566	26.221	26.037	26.603	-0.038671					28	19	2	0	0	0	0.34247	1	4391	4391		8.5933	1.304	1	121500			43864	671	25406	25407	53349	53349					-0.05751353222262878
SMQQLEQW	8	Unmodified	_SMQQLEQW_					0	0	0		nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;ENST00000510738.2_1_12:19413894-19459437:+|nuORF	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	525.239667	1048.46478	0.56291	0.00029566	-1.5171	-0.00079685	-0.95421	-0.00050119	525.2387670489295	26.334	0.45732	26.311	26.073	26.53	-0.022238	0.062328	8.3021E-05	NaN	8.5933	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117250			43865	671	25406	25407							-0.05751353222262878
SMRLLLVRFF	10	Unmodified	_SMRLLLVRFF_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.3763427734375	2	641.378643	1280.74273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96	1	95.996	95.496	96.496	-0.0038147								0	0	0	0.37581	1	25662	25662		3.9444	0.3479	1		+		43866	13929	25407	25408	53350	53350					0.11359179101373229
SMTRYFYLF	9	Oxidation (M)	_SM(Oxidation (M))TRYFYLF_		SM(1)TRYFYLF		SM(70)TRYFYLF	0	0	1		ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9|CASP12;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12	ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12	ENSG00000196954|ENST00000444739|CASP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.2945556640625	2	622.294442	1242.57433	0.26753	0.00016648	-0.090687	-5.6434E-05	0.17684	0.00011005	622.294396449857	69.995	0.83706	69.995	69.703	70.54	0					105	30	5	0	0	0	0.015924	3	17723	17681;17723;17773		70.332	48.585	1	3520100			43867	7918;12908	25408	25409	53351;53352;53353	53352		866			-0.03725347602949114
SMTRYFYLF	9	Oxidation (M)	_SM(Oxidation (M))TRYFYLF_		SM(1)TRYFYLF		SM(70)TRYFYLF	0	0	1		ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9|CASP12;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12	ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12	ENSG00000196954|ENST00000444739|CASP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.2944946289062	2	622.294442	1242.57433	0.021788	1.3558E-05	0.12242	7.6184E-05	0.14421	8.9742E-05	622.2945248209952	69.996	1.0881	70.062	69.717	70.805	0.06604					108	38	4	0	0	0	0.015924	2	17715	17665;17715		70.332	43.448	1	3436100			43868	7918;12908	25408	25409	53354;53355	53355		866			-0.03725347602949114
SMTRYFYLF	9	Oxidation (M)	_SM(Oxidation (M))TRYFYLF_		SM(1)TRYFYLF		SM(70)TRYFYLF	0	0	1		ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000196954|P49662-2|CASP4;nc|ENSG00000204403|Q6UXS9|CASP12;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12	ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000204403|Q6UXS9-3|CASP12	ENSG00000196954|ENST00000444739|CASP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.2944946289062	2	622.294442	1242.57433	0.19055	0.00011858	-0.10762	-6.6973E-05	0.082927	5.1605E-05	622.294425115903	70.016	1.2727	69.994	69.701	70.974	-0.022087					123	45	5	0	0	0	0.015924	3	17714	17670;17714;17759		70.332	48.585	1	3929500			43869	7918;12908	25408	25409	53356;53357;53358	53357		866			-0.03725347602949114
SNCIGRHPFG	10	Unmodified	_SNCIGRHPFG_					0	0	0			REV__ENSG00000088812|ENST00000262919|ATRN	REV__ENSG00000088812|ENST00000262919|ATRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7775268554688	2	544.258725	1086.5029	0.24572	0.00013374	0.36523	0.00019878	0.61095	0.00033251	544.2586028986955	13.194	0.14898	13.094	12.98	13.129	-0.09929					7	4	2	0	0	0	0.32123	1	323	323		1.6526	0.85899	1	20346	+		43870	14012	25409	25410	53359	53359					-0.036894225169589845
SNGTVSLWS	9	Unmodified	_SNGTVSLWS_					0	0	0		ENST00000489905.1_1_6:33248421-33255161:-|nuORF;ENSG00000227057|ENST00000374617|WDR46	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.73333740234375	2	475.732532	949.45051	0.27358	0.00013015	1.0901	0.00051859	1.3637	0.00064874	475.7334383016126	66.55	0.63271	66.634	66.441	67.074	0.083832					54	22	4	0	0	0	0.19686	1	16659	16659		24.991	5.734	1	392760			43871	8455	25410	25411	53360	53360					-0.026236823788963193
SNGTVSLWS	9	Unmodified	_SNGTVSLWS_					0	0	0		ENST00000489905.1_1_6:33248421-33255161:-|nuORF;ENSG00000227057|ENST00000374617|WDR46	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	475.732532	949.45051	0.20392	9.701E-05	2.1775	0.0010359	2.3815	0.0011329	475.7337255630048	66.731	0.59825	66.731	66.423	67.022	0	0.03907	0.00043679	NaN	24.991	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340810			43872	8455	25410	25411							-0.026236823788963193
SNGTVSLWS	9	Unmodified	_SNGTVSLWS_					0	0	0		ENST00000489905.1_1_6:33248421-33255161:-|nuORF;ENSG00000227057|ENST00000374617|WDR46	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	475.732532	949.45051	0.13044	6.2056E-05	1.9857	0.00094466	2.1161	0.0010067	475.7334815555108	66.724	0.43801	66.71	66.485	66.923	-0.013588	0.018625	0.00025425	NaN	24.991	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291790			43873	8455	25410	25411							-0.026236823788963193
SNIDKSLYV	9	Unmodified	_SNIDKSLYV_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.77734375	2	519.776939	1037.53933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.629	1	41.629	41.129	42.129	0								0	0	0	0.042243	1	8988	8988		63.227	25.052	1				43874	2308	25411	25412	53361	53361					0.022057328607616
SNIDKSLYV	9	Unmodified	_SNIDKSLYV_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7772216796875	2	519.776939	1037.53933	0.22564	0.00011728	0.30478	0.00015842	0.53042	0.0002757	519.7771415148185	41.379	0.37188	41.469	41.215	41.587	0.090252					22	13	2	0	0	0	0.022205	1	8894	8894		63.227	17.528	1	749920			43875	2308	25411	25412	53362	53362					0.022057328607616
SNIDKSLYV	9	Unmodified	_SNIDKSLYV_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.77734375	2	519.776939	1037.53933	0.36984	0.00019224	0.82479	0.00042871	1.1946	0.00062094	519.7771293949171	41.369	0.48865	41.466	41.093	41.581	0.096622					33	17	4	0	0	0	0.043711	1	8877	8877		55.235	17.059	1	1343700			43876	2308	25411	25412	53363	53363					0.022057328607616
SNIGPRSVTL	10	Unmodified	_SNIGPRSVTL_					0	0	0		ENST00000479356.1_1_17:71354047-71433905:-|nuORF;nc|ENSG00000069188|Q58EX2-2|SDK2;nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2	ENST00000479356.1_1_17:71354047-71433905:-|nuORF	ENST00000479356.1_1_17:71354047-71433905:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7789916992188	2	522.29583	1042.57711	0.55194	0.00028827	-0.67343	-0.00035173	-0.1215	-6.3457E-05	522.2953520280233	19.782	0.54588	19.726	19.516	20.062	-0.055693					37	19	3	0	0	0	0.31039	1	2347	2347		18.146	1.2041	1	65288			43877	900	25412	25413	53364	53364					0.057522438462456194
SNIQVTVQSH	10	Unmodified	_SNIQVTVQSH_					0	0	0			REV__ENSG00000166130|ENST00000299157|IKBIP	REV__ENSG00000166130|ENST00000299157|IKBIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7879638671875	2	556.78837	1111.56219	0.13646	7.598E-05	-0.77687	-0.00043255	-0.64041	-0.00035657	556.7878906370782	18.333	0.58867	18.216	18.089	18.678	-0.11739					24	19	2	0	0	0	0.40532	1	1919	1919		2.4985	0	1	44280	+		43878	17293	25413	25414	53365	53365					0.010867519782323143
SNKLHNLQLE	10	Unmodified	_SNKLHNLQLE_					0	0	0			REV__nc|ENSG00000143033|Q9Y483-3|MTF2	REV__nc|ENSG00000143033|Q9Y483-3|MTF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3248291015625	2	598.325119	1194.63569	0.42158	0.00025224	-0.29861	-0.00017867	0.12297	7.3574E-05	598.3251513417945	96.554	0.5172	96.548	96.27	96.788	-0.0055466					99	51	3	0	0	0	0.40262	1	25802	25802		2.9952	0	1	128450	+		43879	16144	25414	25415	53366	53366					0.046153004207099
SNLCLPEKN	9	Unmodified	_SNLCLPEKN_					0	0	0		ENST00000054666.10_1_1:7840062-7840113:+|nuORF	ENST00000054666.10_1_1:7840062-7840113:+|nuORF	ENST00000054666.10_1_1:7840062-7840113:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.25555419921875	2	509.255317	1016.49608	0.33632	0.00017127	0.46472	0.00023666	0.80103	0.00040793	509.2554240799083	58.654	0.93302	58.746	58.418	59.351	0.091301					71	32	4	0	0	0	0.23767	1	14242	14242		18.146	0.011366	1	1161600			43880	8773	25415	25416	53367	53367					-0.011507801881748492
SNLSYIQSF	9	Unmodified	_SNLSYIQSF_					0	0	0			REV__nc|ENSG00000121417|Q13398-6|ZNF211	REV__nc|ENSG00000121417|Q13398-6|ZNF211	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2310791015625	2	529.761289	1057.50803	0.52474	0.00027798	-1.012	-0.00053613	-0.48728	-0.00025814	529.761135372697	70.381	1.0377	70.381	69.673	70.711	0					45	20	3	0	0	0	0.18936	1	17834	17834		32.786	0	1	354270	+		43881	15120	25416	25417	53368	53368					-0.018428401733444844
SNLSYIQSF	9	Unmodified	_SNLSYIQSF_					0	0	0			REV__nc|ENSG00000121417|Q13398-6|ZNF211	REV__nc|ENSG00000121417|Q13398-6|ZNF211	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	529.761289	1057.50803	0.53743	0.00028471	-0.74197	-0.00039307	-0.20454	-0.00010836	529.761296146312	70.457	0.5558	70.432	70.134	70.69	-0.024864	0.025601	0.00015388	NaN	32.786	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339780	+		43882	15120	25416	25417							-0.018428401733444844
SNMEFLFNK	9	Oxidation (M)	_SNM(Oxidation (M))EFLFNK_		SNM(1)EFLFNK		SNM(120)EFLFNK	0	0	1		ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.26806640625	2	573.268424	1144.5223	0.50809	0.00029127	-0.72272	-0.00041431	-0.21463	-0.00012304	573.267980607358	44.294	0.5043	44.363	44.147	44.651	0.068569					43	18	3	0	0	0	0.0010993	1	9810	9810		121.5	77.645	1	631730			43883	1748	25417	25418	53369	53369		215			-0.04418511016706361
SNMEFLFNK	9	Oxidation (M)	_SNM(Oxidation (M))EFLFNK_		SNM(1)EFLFNK		SNM(130)EFLFNK	0	0	1		ENSG00000102158|ENST00000618282|MAGT1;ENST00000476168.1_1_X:77112151-77150907:-|nuORF	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.2681884765625	2	573.268424	1144.5223	0.25189	0.0001444	-0.71483	-0.00040979	-0.46294	-0.00026539	573.2680336872539	44.299	0.43683	44.374	44.094	44.531	0.075047					37	15	3	0	0	0	0.00026652	1	9764	9764		132.13	82.607	1	622810			43884	1748	25417	25418	53370	53370		215			-0.04418511016706361
SNNKHLNTI	9	Unmodified	_SNNKHLNTI_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF;ENST00000548534.1_1_12:105538575-105540954:+|nuORF	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2757568359375	2	520.777805	1039.54106	0.32014	0.00016672	0.36268	0.00018888	0.68282	0.0003556	520.7778835515716	100.13	0.46684	100.13	99.952	100.42	-0.006897					80	64	2	0	0	0	0.25323	1	26845	26845		10.074	5.3179	1	186800			43885	3938	25418	25419	53371	53371					0.02286786669378671
SNNLIELVAF	10	Unmodified	_SNNLIELVAF_					0	0	0			REV__CLRN3|p.I116Tfs*57|1|0.28|ENSG00000180745|chr10:127883758-127883759|-/TGCG|frameshift_variant	REV__CLRN3|p.I116Tfs*57|1|0.28|ENSG00000180745|chr10:127883758-127883759|-/TGCG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.74755859375	2	560.305864	1118.59717	0.48364	0.00027099	-1.7796	-0.00099712	-1.296	-0.00072613	560.305890807528	85.928	1.6565	85.928	85.282	86.938	0					99	64	3	0	0	0	0.31847	1	22622	22622		6.7232	0	1	141000	+		43886	13231	25419	25420	53372	53372					0.0426199478615672
SNNYPYIQK	9	Unmodified	_SNNYPYIQK_					0	0	0			REV__ENSG00000108950|ENST00000592554|FAM20A	REV__ENSG00000108950|ENST00000592554|FAM20A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.7786254882812	2	563.780013	1125.54547	0.3239	0.00018261	-2.3194	-0.0013077	-1.9955	-0.001125	563.7785955347903	22.15	0.47795	22.05	21.888	22.366	-0.10034					24	17	2	0	0	0	0.33911	1	3062	3062		2.9952	0.10602	1	88836	+		43887	14618	25420	25421	53373	53373					-0.012277489077405335
SNNYPYIQK	9	Unmodified	_SNNYPYIQK_					0	0	0			REV__ENSG00000108950|ENST00000592554|FAM20A	REV__ENSG00000108950|ENST00000592554|FAM20A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	563.780013	1125.54547	0.3239	0.00018261	-2.3194	-0.0013077	-1.9955	-0.001125	563.7785955347903	22.15	0.47795	22.05	21.888	22.366	-0.10034	-0.024215	-5.2704E-05	NaN	2.9952	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88836	+		43888	14618	25420	25421							-0.012277489077405335
SNNYPYIQK	9	Unmodified	_SNNYPYIQK_					0	0	0			REV__ENSG00000108950|ENST00000592554|FAM20A	REV__ENSG00000108950|ENST00000592554|FAM20A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	563.780013	1125.54547	0.096139	5.4201E-05	-2.125	-0.001198	-2.0289	-0.0011438	563.7788070472728	22.143	0.36858	22.094	21.948	22.316	-0.049377	0.019864	0.00016652	NaN	2.9952	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75349	+		43889	14618	25420	25421							-0.012277489077405335
SNPACSPR	8	Unmodified	_SNPACSPR_					0	0	0			REV__chr7:77282789-77286798|245|34.77|0.39|6.48|+|1|None,CCDC146|1	REV__chr7:77282789-77286798|245|34.77|0.39|6.48|+|1|None,CCDC146|1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.182861328125	2	416.192519	830.370486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.416	1	25.385	24.885	25.885	-0.031408								0	0	0	0.37362	1	4044	4044		3.9444	0	1		+		43890	13220	25421	25422	53374	53374					-0.05148447253748145
SNPYHVVILF	10	Unmodified	_SNPYHVVILF_					0	0	0		nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29-6|LSR;nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29|LSR	nc|ENSG00000105699|Q86X29-3|LSR	nc|ENSG00000105699|Q86X29-3|LSR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7699584960938	2	594.824224	1187.63389	0.49974	0.00029726	-0.10655	-6.3376E-05	0.3932	0.00023388	594.8242862511297	51.866	0.35554	51.916	51.788	52.144	0.050575					21	12	2	0	0	0	0.31143	1	12127	12127		12.241	2.8575	1	216560			43891	12636	25422	25423	53375	53375					0.04758291402731629
SNQKQSIF	8	Unmodified	_SNQKQSIF_					0	0	0			REV__ENSG00000129315|ENST00000261900|CCNT1	REV__ENSG00000129315|ENST00000261900|CCNT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.24871826171875	2	476.248349	950.482145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.738	1	76.738	76.238	77.238	0								0	0	0	0.37078	1	19774	19774		5.2307	0	1		+		43892	15410	25423	25424	53376	53376					0.004923103750456903
SNQKVRQP	8	Unmodified	_SNQKVRQP_					0	0	0			REV__ENST00000566611.5_1_16:57786940-57790081:+|nuORF	REV__ENST00000566611.5_1_16:57786940-57790081:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7800598144531	2	478.76724	955.519927	-0.041838	-2.0031E-05	-0.26787	-0.00012825	-0.3097	-0.00014828	478.76711948245793	15.731	0.50202	15.731	15.445	15.947	0					24	17	2	0	0	0	0.34408	1	1055	1055		2.3027	0	1	36234	+		43893	16056	25424	25425	53377	53377					0.04038821360518341
SNQKVRQP	8	Unmodified	_SNQKVRQP_					0	0	0			REV__ENST00000566611.5_1_16:57786940-57790081:+|nuORF	REV__ENST00000566611.5_1_16:57786940-57790081:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	478.76724	955.519927	0.039512	1.8917E-05	-0.089984	-4.3082E-05	-0.050473	-2.4165E-05	478.76713476558126	15.916	0.43793	15.801	15.513	15.95	-0.11434	0.037768	0.00013204	NaN	2.3027	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55705	+		43894	16056	25424	25425							0.04038821360518341
SNQKVRQP	8	Unmodified	_SNQKVRQP_					0	0	0			REV__ENST00000566611.5_1_16:57786940-57790081:+|nuORF	REV__ENST00000566611.5_1_16:57786940-57790081:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	478.76724	955.519927	0.063343	3.0327E-05	-0.38227	-0.00018302	-0.31893	-0.00015269	478.7669499144724	15.823	0.42806	15.759	15.545	15.973	-0.064414	-0.0047722	-0.00014784	NaN	2.3027	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58542	+		43895	16056	25424	25425							0.04038821360518341
SNQLPRPVGF	10	Unmodified	_SNQLPRPVGF_					0	0	0		ENSG00000198440|ENST00000333201|ZNF583	ENSG00000198440|ENST00000333201|ZNF583	ENSG00000198440|ENST00000333201|ZNF583	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8038330078125	2	557.803823	1113.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.491	1	87.491	86.991	87.991	0								0	0	0	0.36922	1	23072	23072		6.7232	0.36906	1				43896	8076	25425	25426	53378	53378					0.040839500831452824
SNRHKPNSKF	10	Unmodified	_SNRHKPNSKF_					0	0	0			REV__nc|ENSG00000054523|O60333-3|KIF1B	REV__nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.8246459960938	2	607.823078	1213.6316	0.226	0.00013737	1.9604	0.0011915	2.1864	0.0013289	607.8243424764822	57.651	0.91231	57.634	57.388	58.3	-0.0172					50	33	2	0	0	0	0.26265	1	13941	13941		24.991	4.5764	1	947490	+		43897	22886	25426	25427	53379	53379					0.03333255717643624
SNRHKPNSKF	10	Unmodified	_SNRHKPNSKF_					0	0	0			REV__nc|ENSG00000054523|O60333-3|KIF1B	REV__nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	607.823078	1213.6316	0.46544	0.00028291	1.7827	0.0010836	2.2482	0.0013665	607.8242418269627	57.38	1.0394	57.466	57.24	58.279	0.085621	-0.092836	-1.2266E-05	NaN	24.991	51	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	940510	+		43898	22886	25426	25427							0.03333255717643624
SNRHKPNSKF	10	Unmodified	_SNRHKPNSKF_					0	0	0			REV__nc|ENSG00000054523|O60333-3|KIF1B	REV__nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	607.823078	1213.6316	0.226	0.00013737	1.9604	0.0011915	2.1864	0.0013289	607.8243424764822	57.651	0.91231	57.634	57.388	58.3	-0.0172	0.075579	0.00020368	NaN	24.991	50	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	947490	+		43899	22886	25426	25427							0.03333255717643624
SNRHKTKIVSL	11	Unmodified	_SNRHKTKIVSL_					0	0	0			REV__ENSG00000232040|ENST00000452236|SCAND3	REV__ENSG00000232040|ENST00000452236|SCAND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8597412109375	2	641.883136	1281.75172	0.42693	0.00027404	-1.1425	-0.00073332	-0.71552	-0.00045928	641.8819138847725	111.99	0.69268	112.01	111.77	112.47	0.0131					123	84	2	0	0	0	0.47649	1	29162	29162		1.1933	0	1	74750	+		43900	19138	25427	25428	53380	53380					0.12211243991396259
SNRMHAINGKI	11	Unmodified	_SNRMHAINGKI_					0	0	0		ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.22454833984375	3	414.224151	1239.65062	0.63311	0.00026225	-0.16712	-6.9223E-05	0.466	0.00019303	414.2240855071804	48.399	1.4412	48.447	48.101	49.542	0.047523					164	52	5	0	0	0	0.42762	1	11214	11214		3.8459	3.8459	1	6619600			43901	7230	25428	25429	53381	53381					0.040384690170412796
SNRMHAINGKI	11	Unmodified	_SNRMHAINGKI_					0	0	0		ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	414.224151	1239.65062	0.4342	0.00017985	0.031127	1.2894E-05	0.46532	0.00019275	414.224184879488	48.358	1.5758	48.401	48.037	49.613	0.04332	-0.022802	0.00010512	NaN	3.8459	166	57	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7507400			43902	7230	25428	25429							0.040384690170412796
SNRTLQLYK	9	Unmodified	_SNRTLQLYK_					0	0	0			REV__ENSG00000164342|ENST00000296795|TLR3	REV__ENSG00000164342|ENST00000296795|TLR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.319091796875	2	561.81693	1121.61931	0.21834	0.00012267	1.334	0.00074949	1.5524	0.00087216	561.8168150581342	19.262	0.71573	19.147	18.863	19.579	-0.11592					50	24	3	0	0	0	0.32371	1	2157	2157		5.2969	0	1	68247	+		43903	17152	25429	25430	53382	53382					0.06336219254603748
SNSDVIIYV	9	Unmodified	_SNSDVIIYV_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.26397705078125	2	505.263665	1008.51278	0.54636	0.00027606	0.17359	8.7707E-05	0.71995	0.00036376	505.2636920470685	64.341	1.0206	64.341	64.079	65.1	0					75	37	4	0	0	0	0.050251	1	15996	15996		62.573	0	1	2079400			43904	2575	25430	25431	53383	53383					0.008860439694331035
SNSDVIIYV	9	Unmodified	_SNSDVIIYV_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2640075683594	2	505.263665	1008.51278	0.51299	0.0002592	0.018555	9.3749E-06	0.53155	0.00026857	505.2636712374532	64.328	1.0053	64.319	64.045	65.05	-0.0095291					71	36	4	0	0	0	0.059216	1	15994	15994		69.105	4.8686	1	1980100			43905	2575	25430	25431	53384	53384					0.008860439694331035
SNSYAIKK	8	Unmodified	_SNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2425537109375	2	455.753267	909.491981	-0.183	-8.3405E-05	0.1023	4.6622E-05	-0.080708	-3.6783E-05	455.7532428784323	14.421	0.34385	14.421	14.279	14.623	0					18	11	2	0	0	0	0.34313	1	710	710		6.7232	0.99131	1	39067			43906	1233	25431	25432	53385	53385					0.03361498380422745
SNTSIAVFHP	10	Unmodified	_SNTSIAVFHP_					0	0	0			REV__ENST00000342584.3_1_5:471735-471993:-|nuORF	REV__ENST00000342584.3_1_5:471735-471993:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.29638671875	2	536.774731	1071.53491	0.57762	0.00031005	-0.93921	-0.00050414	-0.36159	-0.00019409	536.7741750724285	30.23	0.44862	30.23	29.97	30.418	0					19	15	2	0	0	0	0.29589	1	5531	5531		22.736	1.1993	1	90788	+		43907	20125	25432	25433	53386	53386					0.00200268437856721
SNVNPLII	8	Unmodified	_SNVNPLII_					0	0	0			REV__nc|ENSG00000171988|Q15652-2|JMJD1C	REV__nc|ENSG00000171988|Q15652-2|JMJD1C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2512512207031	2	435.258185	868.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.696	1	72.75	72.25	73.25	0.053833								0	0	0	0.35251	1	18536	18536		13.508	0.97634	1		+		43908	17683	25433	25434	53387	53387					0.06230686385822537
SPAAAQKAV	9	Unmodified	_SPAAAQKAV_					0	0	0		nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1;ENST00000492283.1_1_2:161159304-161174707:-|nuORF;ENST00000497205.1_1_3:29476395-29781369:+|nuORF;nc|ENSG00000144642|Q6XE24-3|RBMS3;nc|ENSG00000144642|Q6XE24-4|RBMS3;nc|ENSG00000144642|Q6XE24-5|RBMS3;nc|ENSG00000144642|Q6XE24-2|RBMS3;ENSG00000144642|ENST00000383767|RBMS3	nc|ENSG00000153250|P29558-2|RBMS1	nc|ENSG00000153250|P29558-2|RBMS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2430419921875	2	421.74016	841.465767	-0.20732	-8.7436E-05	-0.20513	-8.651E-05	-0.41245	-0.00017395	421.7400563581793	15.381	0.7181	15.271	15.068	15.786	-0.10981					50	24	4	0	0	0	0.23235	1	1056	1056		21.537	3.3906	1	214440			43909	5070	25434	25435	53388	53388					0.03869229208942215
SPAAAQKAV	9	Unmodified	_SPAAAQKAV_					0	0	0		nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000153250|ENST00000348849|RBMS1;ENST00000492283.1_1_2:161159304-161174707:-|nuORF;ENST00000497205.1_1_3:29476395-29781369:+|nuORF;nc|ENSG00000144642|Q6XE24-3|RBMS3;nc|ENSG00000144642|Q6XE24-4|RBMS3;nc|ENSG00000144642|Q6XE24-5|RBMS3;nc|ENSG00000144642|Q6XE24-2|RBMS3;ENSG00000144642|ENST00000383767|RBMS3	nc|ENSG00000153250|P29558-2|RBMS1	nc|ENSG00000153250|P29558-2|RBMS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.2430419921875	2	421.74016	841.465767	-0.23826	-0.00010049	-0.16009	-6.7518E-05	-0.39836	-0.000168	421.7400428647426	15.366	0.59671	15.302	15.158	15.754	-0.064414					43	19	4	0	0	0	0.1335	1	1030	1030		47.594	11.467	1	181850			43910	5070	25434	25435	53389	53389					0.03869229208942215
SPAAARWR	8	Unmodified	_SPAAARWR_					0	0	0		ENST00000345317.6_1_7:26894494-26904350:-|nuORF	ENST00000345317.6_1_7:26894494-26904350:-|nuORF	ENST00000345317.6_1_7:26894494-26904350:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.2482604980469	2	457.751393	913.488233	0.002343	1.0725E-06	-0.20995	-9.6107E-05	-0.20761	-9.5034E-05	457.75115524678756	22.474	0.90918	22.387	22.057	22.967	-0.087608					44	32	2	0	0	0	0.32886	1	3250	3250		21.747	9.2151	1	483850			43911	9560	25435	25436	53390	53390					0.028028733972178088
SPAAERIRFIL	11	Unmodified	_SPAAERIRFIL_					0	0	0		nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.91888427734375	3	424.918945	1271.73501	0.19806	8.4159E-05	-0.34974	-0.00014861	-0.15168	-6.4453E-05	424.91875271451806	54.151	0.76851	54.151	53.834	54.602	0					78	27	4	0	0	0	0.036631	3	12848	12803;12848;12902		54.259	38.793	1	2460700			43912	1155	25436	25437	53391;53392;53393	53392					0.11000743105455513
SPAAERIRFIL	11	Unmodified	_SPAAERIRFIL_					0	0	0		nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.875	2	636.874779	1271.73501	0.58494	0.00037253	-0.29532	-0.00018808	0.28962	0.00018445	636.8745434993857	54.157	0.69376	54.157	53.858	54.552	0					63	24	4	0	0	0	1.056E-08	1	12837	12837		142.92	102.97	1	1261200			43913	1155	25436	25437	53394	53394					0.11000743105455513
SPAAERIRFIL	11	Unmodified	_SPAAERIRFIL_					0	0	0		nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.9188537597656	3	424.918945	1271.73501	0.013247	5.6287E-06	-0.13645	-5.7981E-05	-0.12321	-5.2352E-05	424.9188479143523	54.068	0.83875	54.131	53.828	54.667	0.063202					101	31	4	0	0	0	0.062106	3	12830	12780;12830;12883		47.724	36.093	1	2778600			43914	1155	25436	25437	53395;53396;53397	53396					0.11000743105455513
SPAAERIRFIL	11	Unmodified	_SPAAERIRFIL_					0	0	0		nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.8749389648438	2	636.874779	1271.73501	0.65789	0.00041899	-0.3414	-0.00021743	0.31648	0.00020156	636.8745404474059	54.068	0.65935	54.131	53.852	54.511	0.063206					65	24	4	0	0	0	1.6446E-12	2	12807	12807;12855		157.49	124.7	1	1478300			43915	1155	25436	25437	53398;53399	53398					0.11000743105455513
SPAAERIRFIL	11	Unmodified	_SPAAERIRFIL_					0	0	0		nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.9188537597656	3	424.918945	1271.73501	0.15239	6.4754E-05	-0.29541	-0.00012553	-0.14302	-6.0771E-05	424.91877628633546	54.311	0.67942	54.295	54.002	54.681	-0.015919					80	23	4	0	0	0	0.036631	2	12903	12853;12903		47.724	21.603	1	2836000			43916	1155	25436	25437	53400;53401	53401					0.11000743105455513
SPAAERIRFIL	11	Unmodified	_SPAAERIRFIL_					0	0	0		nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.875	2	636.874779	1271.73501	0.78509	0.00050001	-0.56812	-0.00036182	0.21697	0.00013818	636.8744212714305	54.313	0.73493	54.297	54.03	54.765	-0.015923					68	25	4	0	0	0	1.587E-06	1	12905	12905		132.22	100.95	1	1431400			43917	1155	25436	25437	53402	53402					0.11000743105455513
SPACPRCMQLF	11	Unmodified	_SPACPRCMQLF_					0	0	0			REV__ENST00000376227.3_1_X:49092034-49093605:+|nuORF	REV__ENST00000376227.3_1_X:49092034-49093605:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.8563232421875	2	626.785404	1251.55625	0.67504	0.0004231	-0.78891	-0.00049448	-0.11387	-7.1373E-05	626.7867603335334	50.387	0.62847	50.432	50.242	50.871	0.044891					46	22	3	0	0	0	0.32855	1	11653	11653		10.8	2.8894	1	308920	+		43918	20485	25437	25438	53403	53403					-0.059461291209572664
SPADHRGYASL	11	Unmodified	_SPADHRGYASL_					0	0	0		ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.2860717773438	2	587.285994	1172.55744	0.22994	0.00013504	0.14381	8.446E-05	0.37375	0.0002195	587.2862083734958	26.959	0.3914	26.938	26.709	27.1	-0.021412					18	13	2	0	0	0	0.3826	1	4506	4506		13.519	4.5424	1	85534			43919	3179	25438	25439	53404	53404					-0.021941321645272183
SPADHRGYASL	11	Unmodified	_SPADHRGYASL_					0	0	0		ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	587.285994	1172.55744	0.28684	0.00016846	-0.071978	-4.2271E-05	0.21486	0.00012619	587.2859604729574	26.901	0.36208	26.901	26.759	27.121	0	-0.029134	4.0998E-05	NaN	13.519	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87570			43920	3179	25438	25439							-0.021941321645272183
SPADHRGYASL	11	Unmodified	_SPADHRGYASL_					0	0	0		ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	587.285994	1172.55744	0.39585	0.00023248	-0.32619	-0.00019157	0.069662	4.0911E-05	587.285638604339	26.964	0.38972	26.953	26.797	27.187	-0.01156	0.022072	-0.00025759	NaN	13.519	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89795			43921	3179	25438	25439							-0.021941321645272183
SPAFKVREF	9	Unmodified	_SPAFKVREF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1;ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3632202148438	2	540.795466	1079.57638	0.53312	0.00028831	-0.1804	-9.7558E-05	0.35272	0.00019075	540.7952982018174	38.534	0.41125	38.625	38.347	38.758	0.090881					25	14	2	0	0	0	0.2524	1	8070	8070		11.495	4.2055	1	189880			43922	6468;12680;5779	25439	25440	53405	53405					0.03977449197191163
SPAFKVREF	9	Unmodified	_SPAFKVREF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1;nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000170606|ENST00000304858|HSPA4;nc|ENSG00000120694|Q92598-4|HSPH1;ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2803955078125	2	540.795466	1079.57638	0.6115	0.0003307	-0.33022	-0.00017858	0.28128	0.00015212	540.7951549483436	38.468	0.41298	38.566	38.32	38.733	0.097527					30	14	3	0	0	0	0.19897	1	8019	8019		23.801	4.5441	1	180460			43923	6468;12680;5779	25439	25440	53406	53406					0.03977449197191163
SPAFRILSV	9	Unmodified	_SPAFRILSV_					0	0	0		ENST00000593157.5_1_19:13216299-13227549:-|nuORF;nc|ENSG00000104907|Q9NXH9-2|TRMT1;ENSG00000104907|ENST00000357720|TRMT1	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.29315185546875	2	495.292559	988.570566	0.11786	5.8376E-05	1.1874	0.00058813	1.3053	0.00064651	495.29339065448113	59.828	0.56528	59.828	59.533	60.098	0					33	19	3	0	0	0	0.014058	1	14612	14612		73.196	32.957	1	503830			43924	1936	25440	25441	53407	53407					0.07582350685527217
SPAFRILSV	9	Unmodified	_SPAFRILSV_					0	0	0		ENST00000593157.5_1_19:13216299-13227549:-|nuORF;nc|ENSG00000104907|Q9NXH9-2|TRMT1;ENSG00000104907|ENST00000357720|TRMT1	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2930603027344	2	495.292559	988.570566	0.061115	3.027E-05	0.78056	0.00038661	0.84167	0.00041688	495.29333952697067	59.683	0.44011	59.778	59.55	59.99	0.095093					33	15	3	0	0	0	0.014058	1	14562	14562		73.196	32.957	1	416160			43925	1936	25440	25441	53408	53408					0.07582350685527217
SPAFRILSV	9	Unmodified	_SPAFRILSV_					0	0	0		ENST00000593157.5_1_19:13216299-13227549:-|nuORF;nc|ENSG00000104907|Q9NXH9-2|TRMT1;ENSG00000104907|ENST00000357720|TRMT1	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	ENST00000593157.5_1_19:13216299-13227549:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2933044433594	2	495.292559	988.570566	0.35097	0.00017383	0.61998	0.00030707	0.97095	0.0004809	495.2933033222722	59.816	0.50817	59.804	59.518	60.026	-0.011486					33	17	3	0	0	0	0.0083763	1	14583	14583		81.915	41.676	1	547630			43926	1936	25440	25441	53409	53409					0.07582350685527217
SPAFSTRVL	9	Unmodified	_SPAFSTRVL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2739562988281	2	489.274367	976.53418	0.59493	0.00029108	-0.42576	-0.00020832	0.16916	8.2767E-05	489.27410182066666	45.573	0.73964	45.573	45.315	46.055	0					58	26	3	0	0	0	0.0028542	2	10167	10167;10217		103.42	47.242	1	1222500			43927	7937;11149	25441	25442	53410;53411	53410					0.044974737888196614
SPAFSTRVL	9	Unmodified	_SPAFSTRVL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2743225097656	2	489.274367	976.53418	0.57395	0.00028082	-0.39651	-0.000194	0.17744	8.6815E-05	489.27408251388636	45.409	0.65352	45.469	45.166	45.819	0.059837					51	22	3	0	0	0	0.0016712	2	10118	10118;10171		114.2	58.699	1	1446100			43928	7937;11149	25441	25442	53412;53413	53412					0.044974737888196614
SPAFSTRVL	9	Unmodified	_SPAFSTRVL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.27447509765625	2	489.274367	976.53418	0.43604	0.00021335	-0.23131	-0.00011317	0.20474	0.00010017	489.2741527266616	45.378	0.75178	45.443	45.173	45.925	0.065048					56	27	3	0	0	0	0.00078391	2	10158	10112;10158		125.53	66.85	1	1475600			43929	7937;11149	25441	25442	53414;53415	53415					0.044974737888196614
SPAGKTNAL	9	Unmodified	_SPAGKTNAL_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.7375793457031	2	429.737617	857.460681	-0.10953	-4.7071E-05	-0.27229	-0.00011701	-0.38182	-0.00016408	429.7375899653432	17.002	1.2105	17.002	16.749	17.96	0					86	41	4	0	0	0	0.00010125	1	1507	1507		140.63	66.21	1	2628000			43930	3670	25442	25443	53416	53416					0.026249253463333844
SPAGKTNAL	9	Unmodified	_SPAGKTNAL_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.73760986328125	2	429.737617	857.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.166	1	17.049	16.549	17.549	-0.11739								0	0	0	1.3123E-06	1	1550	1550		128.93	54.51	1				43931	3670	25442	25443	53417	53417					0.026249253463333844
SPAGKTNAL	9	Unmodified	_SPAGKTNAL_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.7376708984375	2	429.737617	857.460681	0.010688	4.593E-06	-0.38302	-0.0001646	-0.37233	-0.00016001	429.737572999177	17.08	1.4127	17.019	16.756	18.169	-0.060429					101	50	4	0	0	0	0.00010125	2	1522	1522;1566		140.63	66.21	1	2716600			43932	3670	25442	25443	53418;53419	53418					0.026249253463333844
SPAGVRTAF	9	Unmodified	_SPAGVRTAF_					0	0	0		nc|ENSG00000172164|Q13884-2|SNTB1;ENSG00000172164|ENST00000517992|SNTB1	nc|ENSG00000172164|Q13884-2|SNTB1	nc|ENSG00000172164|Q13884-2|SNTB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2455139160156	2	453.245609	904.476666	0.16516	7.4857E-05	-0.45979	-0.0002084	-0.29463	-0.00013354	453.245242738279	33.186	0.61051	33.241	33.002	33.613	0.055309					46	21	3	0	0	0	0.018042	1	6408	6408		67.081	25.125	1	397490			43933	6607	25443	25444	53420	53420					0.020606315832196742
SPAGVRTAF	9	Unmodified	_SPAGVRTAF_					0	0	0		nc|ENSG00000172164|Q13884-2|SNTB1;ENSG00000172164|ENST00000517992|SNTB1	nc|ENSG00000172164|Q13884-2|SNTB1	nc|ENSG00000172164|Q13884-2|SNTB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.24591064453125	2	453.245609	904.476666	0.053799	2.4384E-05	-0.036329	-1.6466E-05	0.01747	7.9183E-06	453.24541737269584	33.197	0.63013	33.252	33.069	33.699	0.054375					44	22	3	0	0	0	0.019446	1	6426	6426		64.927	22.971	1	435910			43934	6607	25443	25444	53421	53421					0.020606315832196742
SPAHPKQTL	9	Unmodified	_SPAHPKQTL_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B;ENST00000472953.1_1_2:160261332-160289886:-|nuORF	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.7720642089844	2	489.771991	977.529429	0.020687	1.0132E-05	0.52377	0.00025653	0.54445	0.00026666	489.77217753417966	14.986	0.39522	14.986	14.759	15.154	0					22	13	2	0	0	0	0.20679	1	891	891		22.658	13.913	1	98551			43935	3119	25444	25445	53422	53422					0.03976589646049433
SPAHPKQTL	9	Unmodified	_SPAHPKQTL_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B;ENST00000472953.1_1_2:160261332-160289886:-|nuORF	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.7723083496094	2	489.771991	977.529429	0.025123	1.2305E-05	0.53664	0.00026283	0.56176	0.00027514	489.77232748145883	15.114	0.40404	15.049	14.871	15.275	-0.064413					22	13	2	0	0	0	0.12279	1	939	939		34.932	12.196	1	105060			43936	3119	25444	25445	53423	53423					0.03976589646049433
SPAKRVPLS	9	Unmodified	_SPAKRVPLS_					0	0	0		ENSG00000176083|ENST00000349618|ZNF683;nc|ENSG00000176083|Q8IZ20|ZNF683	ENSG00000176083|ENST00000349618|ZNF683	ENSG00000176083|ENST00000349618|ZNF683	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.77777099609375	2	477.790184	953.565815	0.47733	0.00022806	-0.89113	-0.00042577	-0.41381	-0.00019771	477.78975898096917	20.777	0.39239	20.724	20.525	20.917	-0.05291					23	13	2	0	0	0	0.25066	1	2584	2584		11.64	2.2929	1	50210			43937	6900	25445	25446	53424	53424					0.08717466542748298
SPAKSHSLS	9	Unmodified	_SPAKSHSLS_					0	0	0			REV__nc|ENSG00000100365|Q15080-3|NCF4	REV__nc|ENSG00000100365|Q15080-3|NCF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7486572265625	2	457.240524	912.466495	0.11043	5.0492E-05	0.33442	0.00015291	0.44485	0.0002034	457.24088144099557	22.089	0.26568	21.989	21.888	22.154	-0.10034					15	9	2	0	0	0	0.25779	1	3078	3078		6.2058	0.97511	1	44801	+		43938	22911	25446	25447	53425	53425					0.0067602385800000775
SPALKRLDL	9	Unmodified	_SPALKRLDL_					0	0	0		COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8111572265625	2	506.811116	1011.60768	0.55486	0.00028121	-0.30044	-0.00015227	0.25442	0.00012894	506.8109408915449	37.666	1.1183	37.666	37.259	38.377	0					87	39	3	0	0	0	0.0066776	1	7798	7798		84.522	32.892	1	1379700			43939	193	25447	25448	53426	53426					0.10234022231270501
SPALKRLDL	9	Unmodified	_SPALKRLDL_					0	0	0		COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.8111267089844	2	506.811116	1011.60768	0.35375	0.00017928	-0.19164	-9.7125E-05	0.16211	8.216E-05	506.81098955790236	37.604	1.3205	37.692	37.218	38.538	0.08741					96	44	3	0	0	0	0.033439	1	7782	7782		59.052	7.4226	1	1528000			43940	193	25447	25448	53427	53427					0.10234022231270501
SPALKRLDL	9	Unmodified	_SPALKRLDL_					0	0	0		COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant;ENSG00000166685|ENST00000299886|COG1	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	COG1|p.T572Lfs*57|1|0.22|ENSG00000166685|chr17:73201539-73201539|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.81103515625	2	506.811116	1011.60768	0.29813	0.0001511	-0.077753	-3.9406E-05	0.22038	0.00011169	506.811025852076	37.573	1.1187	37.666	37.197	38.316	0.093014					89	38	3	0	0	0	0.033439	1	7757	7757		59.052	7.4226	1	1204000			43941	193	25447	25448	53428	53428					0.10234022231270501
SPALKTTRL	9	Unmodified	_SPALKTTRL_					0	0	0		nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;ENST00000502249.6_1_4:119435248-119475252:+|nuORF	nc|ENSG00000143702|Q5SW79-3|CEP170	nc|ENSG00000143702|Q5SW79-3|CEP170	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.8033752441406	2	493.803291	985.59203	0.35864	0.0001771	-4.4111	-0.0021782	-4.0524	-0.0020011	493.80311456822096	24.63	1.0483	24.63	24.248	25.296	0					113	35	5	0	0	0	0.016571	2	3775	3775;3830		69.338	34.822	1	516850			43942	4541	25448	25449	53429;53430	53429					0.09865735714208768
SPALKTTRL	9	Unmodified	_SPALKTTRL_					0	0	0		nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;ENST00000502249.6_1_4:119435248-119475252:+|nuORF	nc|ENSG00000143702|Q5SW79-3|CEP170	nc|ENSG00000143702|Q5SW79-3|CEP170	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.8032531738281	2	493.803291	985.59203	0.34755	0.00017162	-0.203	-0.00010024	0.14455	7.1381E-05	493.80309381080906	24.681	0.69861	24.625	24.376	25.074	-0.055931					46	24	2	0	0	0	0.013404	2	3855	3802;3855		74.2	38.073	1	396310			43943	4541	25448	25449	53431;53432	53432					0.09865735714208768
SPALKTTRL	9	Unmodified	_SPALKTTRL_					0	0	0		nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;ENST00000502249.6_1_4:119435248-119475252:+|nuORF	nc|ENSG00000143702|Q5SW79-3|CEP170	nc|ENSG00000143702|Q5SW79-3|CEP170	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.8031921386719	2	493.803291	985.59203	0.12185	6.017E-05	0.0031689	1.5648E-06	0.12502	6.1735E-05	493.8032060670514	24.635	0.78096	24.603	24.4	25.181	-0.03141					39	26	2	0	0	0	0.01251	2	3795	3795;3840		75.571	44.344	1	419430			43944	4541	25448	25449	53433;53434	53433					0.09865735714208768
SPALLAPGAS	10	Unmodified	_SPALLAPGAS_					0	0	0			REV__ENST00000502922.5_1_5:176873849-176882032:+|nuORF	REV__ENST00000502922.5_1_5:176873849-176882032:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7742614746094	2	442.247818	882.481082	0.5191	0.00022957	0.84972	0.00037579	1.3688	0.00060536	442.24841040629565	50.938	0.45996	50.938	50.738	51.198	0					28	16	2	0	0	0	0.26638	1	11826	11826		18.146	3.3081	1	309470	+		43945	21722	25449	25450	53435	53435					0.0351409600613124
SPALLAPGAS	10	Unmodified	_SPALLAPGAS_					0	0	0			REV__ENST00000502922.5_1_5:176873849-176882032:+|nuORF	REV__ENST00000502922.5_1_5:176873849-176882032:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7742919921875	2	442.247818	882.481082	0.33546	0.00014836	0.81688	0.00036126	1.1523	0.00050962	442.2484497095455	50.941	0.4026	50.988	50.794	51.196	0.046574					30	14	3	0	0	0	0.28434	1	11855	11855		19.257	3.4098	1	306110	+		43946	21722	25449	25450	53436	53436					0.0351409600613124
SPALLAPGAS	10	Unmodified	_SPALLAPGAS_					0	0	0			REV__ENST00000502922.5_1_5:176873849-176882032:+|nuORF	REV__ENST00000502922.5_1_5:176873849-176882032:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.77410888671875	2	442.247818	882.481082	0.4844	0.00021422	0.67398	0.00029807	1.1584	0.00051229	442.2483310881144	51.001	0.4371	51.011	50.757	51.194	0.0095673					26	16	2	0	0	0	0.26638	1	11819	11819		18.146	3.3081	1	261290	+		43947	21722	25449	25450	53437	53437					0.0351409600613124
SPALRLTTGP	10	Unmodified	_SPALRLTTGP_					0	0	0			REV__ENST00000441698.6_1_8:9911977-10065409:+|nuORF	REV__ENST00000441698.6_1_8:9911977-10065409:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.80145263671875	2	506.792924	1011.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.923	1	37.923	37.423	38.423	0								0	0	0	0.34994	1	7857	7857		14.838	0	1		+		43948	19940	25450	25451	53438	53438					0.06597145334558263
SPAMERRHPQ	10	Unmodified	_SPAMERRHPQ_					0	0	0		ENSG00000185666|ENST00000358763|SYN3	ENSG00000185666|ENST00000358763|SYN3	ENSG00000185666|ENST00000358763|SYN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.8731994628906	3	403.536618	1207.58802	0.13903	5.6104E-05	4.2933	0.0017325	4.4323	0.0017886	403.87255047086927	45.862	0.6841	45.862	45.614	46.298	0					31	24	2	0	0	0	0.34325	1	10294	10294		8.4443	4.3277	1	351530			43949	7550	25451	25452	53439	53439					-0.007466770511200593
SPANTRYLFL	10	Unmodified	_SPANTRYLFL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB;ENST00000492351.6_1_4:102029270-102092253:-|nuORF;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA	nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.3193359375	2	591.319306	1180.62406	0.49666	0.00029368	-0.85229	-0.00050397	-0.35563	-0.00021029	591.3189246622559	58.652	0.82747	58.652	58.387	59.215	0					55	28	4	0	0	0	0.00069047	2	14216	14216;14264		124.95	85.003	1	2809300			43950	2144;4199	25452	25453	53440;53441	53440					0.04097103397361934
SPANTRYLFL	10	Unmodified	_SPANTRYLFL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB;ENST00000492351.6_1_4:102029270-102092253:-|nuORF;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA	nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.3191528320312	2	591.319306	1180.62406	0.44263	0.00026173	-0.75178	-0.00044454	-0.30916	-0.00018281	591.3189949401755	58.485	0.75728	58.577	58.257	59.015	0.091305					49	26	3	0	0	0	1.0144E-05	4	14186	14130;14146;14186;14236		150.62	94.442	1	2460100			43951	2144;4199	25452	25453	53442;53443;53444;53445	53444					0.04097103397361934
SPANTRYLFL	10	Unmodified	_SPANTRYLFL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB;ENST00000492351.6_1_4:102029270-102092253:-|nuORF;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA	nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000138814|Q08209-5|PPP3CA	nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.319091796875	2	591.319306	1180.62406	0.55904	0.00033057	-1.0285	-0.00060815	-0.46943	-0.00027758	591.318861127459	58.7	0.80959	58.686	58.386	59.196	-0.014267					50	28	3	0	0	0	0.00069047	2	14279	14227;14279		124.95	77.204	1	3070100			43952	2144;4199	25452	25453	53446;53447	53447					0.04097103397361934
SPAPGTAKKAK	11	Unmodified	_SPAPGTAKKAK_					0	0	0			REV__ENST00000488829.1_1_9:89626569-89628063:+|nuORF	REV__ENST00000488829.1_1_9:89626569-89628063:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8142700195312	2	528.314023	1054.61349	0.20687	0.00010929	0.066512	3.5139E-05	0.27339	0.00014443	528.8138983692609	118.74	1.8195	118.72	118.15	119.97	-0.024147					433	229	2	0	0	0	0.47546	1	30931	30931		1.3295	0	1	25102	+		43953	21582	25453	25454	53448	53448					0.08837120742941806
SPAPKRMKL	9	Oxidation (M)	_SPAPKRM(Oxidation (M))KL_		SPAPKRM(1)KL		SPAPKRM(42)KL	0	0	1		ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3049926757812	2	522.305144	1042.59573	0.13196	6.8926E-05	-0.23644	-0.0001235	-0.10448	-5.457E-05	522.3050705056584	13.611	0.62726	13.611	13.365	13.992	0					49	21	4	0	0	0	0.07944	1	454	454		41.956	21.502	1	633100			43954	3086	25454	25455	53449	53449		385			0.0761408221644615
SPARGGIGAGL	11	Unmodified	_SPARGGIGAGL_					0	0	0		ENST00000570005.5_1_16:2732549-2747193:+|nuORF;ENSG00000167977|ENST00000301738|KCTD5	ENST00000570005.5_1_16:2732549-2747193:+|nuORF	ENST00000570005.5_1_16:2732549-2747193:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.7775573730469	2	478.269616	954.524678	0.26943	0.00012886	-0.36123	-0.00017276	-0.091798	-4.3904E-05	478.2693050510874	19.819	0.29642	19.703	19.544	19.84	-0.11592					15	9	2	0	0	0	0.3245	1	2377	2377		17.443	4.4002	1	39530			43955	6226	25455	25456	53450	53450					0.045597055032772005
SPARHTTSV	9	Unmodified	_SPARHTTSV_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-4|DOCK4;ENST00000486186.1_7:111368332-111379399:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.3060302734375	2	478.251423	954.488293	-0.070945	-3.393E-05	0.81755	0.000391	0.74661	0.00035707	478.25161227008846	12.91	0.36865	12.811	12.673	13.042	-0.099291					30	12	4	0	0	0	0.2524	1	269	269		11.495	2.1473	1	105780			43956	3371	25456	25457	53451	53451					0.009228286065649627
SPARHTTSV	9	Unmodified	_SPARHTTSV_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-4|DOCK4;ENST00000486186.1_7:111368332-111379399:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.3059387207031	2	478.251423	954.488293	-0.16502	-7.892E-05	0.89984	0.00043035	0.73482	0.00035143	478.25143851811237	12.914	0.31256	12.846	12.734	13.047	-0.067496					19	10	2	0	0	0	0.22701	1	265	265		23.79	7.9426	1	98536			43957	3371	25456	25457	53452	53452					0.009228286065649627
SPARPPFSF	9	Unmodified	_SPARPPFSF_					0	0	0		nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENST00000573058.1_1_17:79225017-79225422:-|nuORF	nc|ENSG00000157637|Q9HBR0-2|SLC38A10	nc|ENSG00000157637|Q9HBR0-2|SLC38A10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.8004455566406	2	503.261259	1004.50797	0.30256	0.00015227	-0.077768	-3.9138E-05	0.22479	0.00011313	503.2612485418129	51.916	0.45013	51.916	51.648	52.098	0					22	16	2	0	0	0	0.17263	1	12141	12141		26.021	11.182	1	179410			43958	12775	25457	25458	53453	53453					0.005892046173357812
SPARPPFSF	9	Unmodified	_SPARPPFSF_					0	0	0		nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENST00000573058.1_1_17:79225017-79225422:-|nuORF	nc|ENSG00000157637|Q9HBR0-2|SLC38A10	nc|ENSG00000157637|Q9HBR0-2|SLC38A10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.80047607421875	2	503.261259	1004.50797	0.13682	6.8858E-05	-0.89474	-0.00045029	-0.75792	-0.00038143	503.26145163073153	51.883	0.64378	51.882	51.602	52.246	-0.00080872					36	23	2	0	0	0	0.23216	1	12162	12162		22.658	5.5715	1	176600			43959	12775	25457	25458	53454	53454					0.005892046173357812
SPARRRPAP	9	Unmodified	_SPARRRPAP_					0	0	0		ENST00000367178.7_2_6:155054552-155054825:+|nuORF	ENST00000367178.7_2_6:155054552-155054825:+|nuORF	ENST00000367178.7_2_6:155054552-155054825:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.76617431640625	2	504.296499	1006.57845	0.1163	5.8649E-05	2.3782	0.0011993	2.4945	0.001258	504.2976668993794	23.085	0.56251	22.997	22.736	23.298	-0.087608					26	19	2	0	0	0	0.25417	1	3325	3325		8.5933	1.8701	1	53655			43960	9727	25458	25459	53455	53455					0.0754192272564751
SPARRSYHCSI	11	Unmodified	_SPARRSYHCSI_					0	0	0			REV__ENSG00000181418|ENST00000421952|DDN	REV__ENSG00000181418|ENST00000421952|DDN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.5630187988281	3	426.212023	1275.61424	-0.11839	-5.0458E-05	-0.55755	-0.00023763	-0.67594	-0.00028809	426.21172333772074	35.751	0.47183	35.838	35.537	36.009	0.08625					20	16	2	0	0	0	0.33094	1	7159	7159		2.6312	0	1	158320	+		43961	18147	25459	25460	53456	53456					-0.012544078796508984
SPASKAARESL	11	Unmodified	_SPASKAARESL_					0	0	0		ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9-2|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.8170166015625	2	558.80402	1115.59349	0.1009	5.6382E-05	0.72612	0.00040576	0.82702	0.00046214	558.8045966568861	19.336	0.39068	19.336	19.157	19.547	0					25	13	3	0	0	0	0.39785	1	2208	2208		11.518	3.9089	1	52170			43962	2404	25460	25461	53457	53457					0.040313250123290345
SPASKAARESL	11	Unmodified	_SPASKAARESL_					0	0	0		ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9-2|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8171997070312	2	558.80402	1115.59349	0.27114	0.00015152	0.6378	0.00035641	0.90895	0.00050792	558.8044844969762	19.544	0.2845	19.428	19.26	19.544	-0.11592					17	9	2	0	0	0	0.29388	1	2269	2269		22.775	7.5265	1	53181			43963	2404	25460	25461	53458	53458					0.040313250123290345
SPASKAARESL	11	Unmodified	_SPASKAARESL_					0	0	0		ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9-2|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.8170166015625	2	558.80402	1115.59349	0.20565	0.00011492	0.84644	0.00047299	1.0521	0.00058791	558.8044018597099	19.377	0.31741	19.321	19.253	19.571	-0.055691					14	10	2	0	0	0	0.41721	1	2243	2243		8.9762	0.82072	1	49541			43964	2404	25460	25461	53459	53459					0.040313250123290345
SPASKLELP	9	Unmodified	_SPASKLELP_					0	0	0			REV__ENSG00000123360|ENST00000243052|PDE1B	REV__ENSG00000123360|ENST00000243052|PDE1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.79486083984375	2	471.26875	940.522947	0.11358	5.3525E-05	0.68044	0.00032067	0.79402	0.0003742	471.2689415231352	41.155	0.42609	41.245	41.002	41.429	0.090252					24	15	2	0	0	0	0.13643	1	8832	8832		31.268	9.7314	1	183950	+		43965	15188	25461	25462	53460	53460					0.05030651694653443
SPASPKISL	9	Unmodified	_SPASPKISL_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.V1010Cfs*42|1|0.18|ENSG00000168488|chr16:28836062-28836062|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2633972167969	2	450.263468	898.512382	0.21299	9.5902E-05	-0.51254	-0.00023078	-0.29955	-0.00013488	450.2631312928246	39.739	0.61027	39.838	39.452	40.062	0.099407					36	21	2	0	0	0	0.0041491	1	8447	8447		93.166	10.637	1	336540			43966	64	25462	25463	53461	53461					0.05906669040234647
SPASPKISL	9	Unmodified	_SPASPKISL_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.V1010Cfs*42|1|0.18|ENSG00000168488|chr16:28836062-28836062|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	450.263468	898.512382	0.029171	1.3135E-05	-0.46739	-0.00021045	-0.43822	-0.00019732	450.2631072372909	39.961	0.58201	39.961	39.644	40.226	0	0.070539	9.2319E-05	NaN	93.166	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280150			43967	64	25462	25463							0.05906669040234647
SPASPLKEL	9	Unmodified	_SPASPLKEL_					0	0	0		ENSG00000108599|ENST00000225737|AKAP10;ENST00000474245.1_1_17:19850645-19861420:-|nuORF	ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.55792236328125	2	471.26875	940.522947	-0.091365	-4.3057E-05	0.68319	0.00032197	0.59183	0.00027891	471.2691798999539	41.328	0.40238	41.328	41.069	41.471	0					21	14	2	0	0	0	0.13946	1	8911	8911		40.725	13.096	1	180990			43968	2200	25463	25464	53462	53462					0.0503065169467618
SPASPLKEL	9	Unmodified	_SPASPLKEL_					0	0	0		ENSG00000108599|ENST00000225737|AKAP10;ENST00000474245.1_1_17:19850645-19861420:-|nuORF	ENSG00000108599|ENST00000225737|AKAP10	ENSG00000108599|ENST00000225737|AKAP10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.7948303222656	2	471.26875	940.522947	0.021345	1.0059E-05	0.48928	0.00023058	0.51062	0.00024064	471.26906400795696	41.033	0.46133	41.13	40.909	41.37	0.096626					24	16	2	0	0	0	0.14646	1	8811	8811		23.79	6.6769	1	221390			43969	2200	25463	25464	53463	53463					0.0503065169467618
SPASRSISL	9	Unmodified	_SPASRSISL_					0	0	0		ENSG00000125726|ENST00000245903|CD70;nc|ENSG00000125726|P32970-2|CD70;chr19:6583478-6586154|456|12.57|0.07|7.49|-|ENST00000423145|CD70,CD70	ENSG00000125726|ENST00000245903|CD70	ENSG00000125726|ENST00000245903|CD70	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.256103515625	2	459.256174	916.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.764	1	32.764	32.264	33.264	0								0	0	0	0.04936	1	6280	6280		61.09	20.851	1				43970	144	25464	25465	53464	53464					0.03620596892096728
SPAVLRPI	8	Unmodified	_SPAVLRPI_					0	0	0		ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1;nc|ENSG00000177675|Q9NR16-3|CD163L1;nc|ENSG00000177675|Q9NR16-2|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	ENSG00000177675|ENST00000313599|CD163L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.7685241699219	2	426.76872	851.522887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.95	1	43.035	42.535	43.535	0.085197								0	0	0	0.13812	1	9390	9390		54.774	0	1				43971	7008	25465	25466	53465	53465					0.09118696485313649
SPAVSRTQL	9	Unmodified	_SPAVSRTQL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2146301269531	2	479.769448	957.524344	0.095309	4.5726E-05	0.16199	7.7718E-05	0.2573	0.00012344	479.7694677526548	27.142	0.59963	27.142	26.841	27.441	0					46	20	3	0	0	0	0.14808	1	4602	4602		46.022	17.528	1	351860			43972	12859	25466	25467	53466	53466					0.04388285783431911
SPAVSRTQL	9	Unmodified	_SPAVSRTQL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2145080566406	2	479.769448	957.524344	0.10884	5.2218E-05	0.25481	0.00012225	0.36365	0.00017447	479.76948335213734	27.155	0.51458	27.133	26.867	27.382	-0.021412					44	17	3	0	0	0	0.1303	1	4613	4613		49.527	14.595	1	378060			43973	12859	25466	25467	53467	53467					0.04388285783431911
SPAVSRTQL	9	Unmodified	_SPAVSRTQL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2145080566406	2	479.769448	957.524344	0.20771	9.9654E-05	-0.37864	-0.00018166	-0.17093	-8.2008E-05	479.7694595768084	27.131	0.55894	27.119	26.879	27.438	-0.011562					48	19	4	0	0	0	0.22179	1	4628	4628		20.581	6.1756	1	396920			43974	12859	25466	25467	53468	53468					0.04388285783431911
SPAYPIPAL	9	Unmodified	_SPAYPIPAL_					0	0	0		ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7606506347656	2	464.760561	927.506569	-0.15021	-6.9811E-05	0.82117	0.00038165	0.67096	0.00031184	464.7608663125135	69.267	1.0233	69.267	68.872	69.895	0					77	36	3	0	0	0	0.1669	2	17476	17476;17529		28.487	5.3384	1	428410			43975	5755	25467	25468	53469;53470	53469					0.039915705285466174
SPAYPIPAL	9	Unmodified	_SPAYPIPAL_					0	0	0		ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	ENSG00000163909|ENST00000372852|HEYL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.76025390625	2	464.760561	927.506569	-0.029438	-1.3681E-05	0.75198	0.00034949	0.72254	0.00033581	464.76083716271063	69.31	1.1223	69.376	68.899	70.021	0.066048					86	39	3	0	0	0	0.1669	2	17463	17463;17519		28.487	5.3384	1	516960			43976	5755	25467	25468	53471;53472	53471					0.039915705285466174
SPDEARPLQAL	11	Unmodified	_SPDEARPLQAL_					0	0	0		ENSG00000146674|ENST00000613132|IGFBP3;nc|ENSG00000146674|P17936-2|IGFBP3	ENSG00000146674|ENST00000613132|IGFBP3	ENSG00000146674|ENST00000613132|IGFBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.817626953125	2	598.817127	1195.6197	0.37232	0.00022295	1.6743	0.0010026	2.0466	0.0012256	598.8186865181367	44.103	0.59227	44.187	43.866	44.458	0.083996					30	21	2	0	0	0	0.24928	1	9754	9754		36.395	15.98	1	335480			43977	4721	25468	25469	53473	53473					0.029715941838276194
SPDEARPLQAL	11	Unmodified	_SPDEARPLQAL_					0	0	0		ENSG00000146674|ENST00000613132|IGFBP3;nc|ENSG00000146674|P17936-2|IGFBP3	ENSG00000146674|ENST00000613132|IGFBP3	ENSG00000146674|ENST00000613132|IGFBP3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	598.817127	1195.6197	0.53502	0.00032038	2.0024	0.0011991	2.5374	0.0015194	598.8187396305023	44.361	0.64629	44.361	43.959	44.605	0	0.087753	0.001563	NaN	39.923	33	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345350			43978	4721	25468	25469							0.029715941838276194
SPDEARPLQAL	11	Unmodified	_SPDEARPLQAL_					0	0	0		ENSG00000146674|ENST00000613132|IGFBP3;nc|ENSG00000146674|P17936-2|IGFBP3	ENSG00000146674|ENST00000613132|IGFBP3	ENSG00000146674|ENST00000613132|IGFBP3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	598.817127	1195.6197	0.61901	0.00037067	-0.26441	-0.00015833	0.3546	0.00021234	598.8173925212259	44.204	0.33921	44.272	44.174	44.513	0.068569	-0.0010037	-0.0011518	NaN	39.923	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387100			43979	4721	25468	25469							0.029715941838276194
SPDFFNDYHL	10	Unmodified	_SPDFFNDYHL_					0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.2590637207031	3	418.852377	1253.5353	-0.060392	-2.5296E-05	-0.65315	-0.00027357	-0.71355	-0.00029887	418.8519540741153	18.591	0.20626	18.474	18.325	18.531	-0.11739					8	6	2	0	0	0	0.32137	1	1964	1964		1.7423	0.54893	1	18148			43980	1055	25469	25470	53474	53474					-0.08132356632972915
SPDFFNDYHL	10	Unmodified	_SPDFFNDYHL_					0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	418.852377	1253.5353	-0.22949	-9.6121E-05	-1.0247	-0.00042921	-1.2542	-0.00052533	418.85173839598417	18.545	0.13668	18.487	18.402	18.539	-0.058172	0.0063495	-0.00032403	NaN	1.7423	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20292			43981	1055	25469	25470							-0.08132356632972915
SPDFVGNGKH	10	Unmodified	_SPDFVGNGKH_					0	0	0		nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4;EIF2AK4|p.K1062Nfs*10|1|0.05|ENSG00000128829|chr15:40002738-40002739|-/TGGGAAG|frameshift_variant;EIF2AK4|p.L1134*|1|0.22|ENSG00000128829|chr15:40007057-40007057|T/-|frameshift_variant	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2565307617188	2	529.256705	1056.49886	0.20148	0.00010663	-0.3812	-0.00020175	-0.17972	-9.5117E-05	529.2563964445419	14.679	0.62411	14.679	14.448	15.072	0					39	21	2	0	0	0	0.32033	1	800	800		3.5965	1.5367	1	118170			43982	3393	25470	25471	53475	53475					-0.027131887389714393
SPDFVGNGKH	10	Unmodified	_SPDFVGNGKH_					0	0	0		nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4;EIF2AK4|p.K1062Nfs*10|1|0.05|ENSG00000128829|chr15:40002738-40002739|-/TGGGAAG|frameshift_variant;EIF2AK4|p.L1134*|1|0.22|ENSG00000128829|chr15:40007057-40007057|T/-|frameshift_variant	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2564086914062	2	529.256705	1056.49886	0.1581	8.3678E-05	-0.34417	-0.00018215	-0.18607	-9.8477E-05	529.2565823331449	14.768	0.58405	14.663	14.489	15.073	-0.10466					45	20	3	0	0	0	0.39935	1	840	840		3.5965	1.2938	1	133210			43983	3393	25470	25471	53476	53476					-0.027131887389714393
SPDFVGNGKH	10	Unmodified	_SPDFVGNGKH_					0	0	0		nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4;EIF2AK4|p.K1062Nfs*10|1|0.05|ENSG00000128829|chr15:40002738-40002739|-/TGGGAAG|frameshift_variant;EIF2AK4|p.L1134*|1|0.22|ENSG00000128829|chr15:40007057-40007057|T/-|frameshift_variant	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	529.256705	1056.49886	0.1581	8.3678E-05	-0.34417	-0.00018215	-0.18607	-9.8477E-05	529.2565823331449	14.768	0.58405	14.663	14.489	15.073	-0.10466	-0.090216	-7.4048E-05	NaN	3.5965	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133210			43984	3393	25470	25471							-0.027131887389714393
SPDFVGNGKH	10	Unmodified	_SPDFVGNGKH_					0	0	0		nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4;EIF2AK4|p.K1062Nfs*10|1|0.05|ENSG00000128829|chr15:40002738-40002739|-/TGGGAAG|frameshift_variant;EIF2AK4|p.L1134*|1|0.22|ENSG00000128829|chr15:40007057-40007057|T/-|frameshift_variant	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	529.256705	1056.49886	0.18057	9.557E-05	-0.14494	-7.6713E-05	0.035629	1.8857E-05	529.2565220057785	14.983	0.64646	14.919	14.511	15.158	-0.064413	0.16497	0.00013684	NaN	3.5965	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132230			43985	3393	25470	25471							-0.027131887389714393
SPDPHKGLVLL	11	Unmodified	_SPDPHKGLVLL_					0	0	0		nc|ENSG00000262246|P57737-3|CORO7;ENST00000572274.1_1_16:4391391-4409335:-|nuORF;ENST00000575531.5_1_16:4407102-4412712:-|nuORF;ENST00000575714.5_1_16:4408319-4455566:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-4|CORO7;ENSG00000262246|ENST00000251166|CORO7	nc|ENSG00000262246|P57737-3|CORO7	nc|ENSG00000262246|P57737-3|CORO7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.2896118164062	2	588.342781	1174.67101	0.21783	0.00012816	-0.22062	-0.0001298	-0.0027922	-1.6427E-06	588.342392265773	46.231	0.5187	46.29	46.015	46.534	0.059837					33	18	2	0	0	0	0.24214	1	10410	10410		44.392	16.763	1	486150			43986	12987	25471	25472	53477	53477					0.09065962948511697
SPDPHKGLVLL	11	Unmodified	_SPDPHKGLVLL_					0	0	0		nc|ENSG00000262246|P57737-3|CORO7;ENST00000572274.1_1_16:4391391-4409335:-|nuORF;ENST00000575531.5_1_16:4407102-4412712:-|nuORF;ENST00000575714.5_1_16:4408319-4455566:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-4|CORO7;ENSG00000262246|ENST00000251166|CORO7	nc|ENSG00000262246|P57737-3|CORO7	nc|ENSG00000262246|P57737-3|CORO7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.2901000976562	2	588.342781	1174.67101	0.2401	0.00014126	-0.37858	-0.00022274	-0.13848	-8.1475E-05	588.3424950033659	46.241	0.51661	46.306	46.096	46.613	0.065048					39	18	3	0	0	0	0.31673	1	10385	10385		17.863	7.7126	1	576160			43987	12987	25471	25472	53478	53478					0.09065962948511697
SPDVRGLDI	9	Unmodified	_SPDVRGLDI_					0	0	0			REV__ENSG00000137547|ENST00000260102|MRPL15	REV__ENSG00000137547|ENST00000260102|MRPL15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7774353027344	2	486.261456	970.50836	0.3128	0.0001521	-0.10163	-4.9418E-05	0.21117	0.00010269	486.2612590582966	38.285	0.73331	38.376	38.101	38.834	0.090881					50	26	2	0	0	0	0.12642	1	8032	8032		34.402	9.5202	1	684700	+		43988	15869	25472	25473	53479	53479					0.021925795465335796
SPEDFMFI	8	Unmodified	_SPEDFMFI_					0	0	0			REV__ENSG00000164163|ENST00000296577|ABCE1	REV__ENSG00000164163|ENST00000296577|ABCE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.28045654296875	2	493.220411	984.426269	0.037469	1.8481E-05	-0.65075	-0.00032097	-0.61329	-0.00030248	493.22016746944513	14.813	0.3378	14.748	14.618	14.955	-0.064413					18	11	2	0	0	0	0.3439	1	889	889		2.8892	0.82947	1	50590	+		43989	17129	25473	25474	53480	53480					-0.06656658856786635
SPEELAPRFT	10	Unmodified	_SPEELAPRFT_					0	0	0			REV__ENSG00000104885|ENST00000398665|DOT1L	REV__ENSG00000104885|ENST00000398665|DOT1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.7720336914062	2	573.793121	1145.57169	0.62752	0.00036007	-3.0599	-0.0017558	-2.4324	-0.0013957	573.7912652531621	21.033	0.28379	20.923	20.779	21.063	-0.11003					11	9	2	0	0	0	0.39935	1	2756	2756		3.5965	0	1	48930	+		43990	14427	25474	25475	53481	53481					0.004725202637473558
SPEERMKE	8	Unmodified	_SPEERMKE_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.76556396484375	2	503.237124	1004.45969	0.13064	6.5745E-05	-0.091834	-4.6214E-05	0.038809	1.953E-05	503.23698694809406	23.331	0.40289	23.331	23.077	23.48	0					24	13	2	0	0	0	0.34167	1	3380	3380		11.64	0.81637	1	73743			43991	3647	25475	25476	53482	53482					-0.04235657084871036
SPEETRAAL	9	Unmodified	_SPEETRAAL_					0	0	0		nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1;ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF	nc|ENSG00000065057|P78549-3|NTHL1	nc|ENSG00000065057|P78549-3|NTHL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.2509460449219	2	487.251089	972.487624	0.15883	7.7389E-05	-0.28439	-0.00013857	-0.12556	-6.118E-05	487.2509337037793	25.315	0.75947	25.315	25.064	25.823	0					59	25	3	0	0	0	0.043711	1	3995	3995		55.235	28.967	1	245230			43992	803	25476	25477	53483	53483					0.0002798916684696451
SPEETRAAL	9	Unmodified	_SPEETRAAL_					0	0	0		nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1;ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF	nc|ENSG00000065057|P78549-3|NTHL1	nc|ENSG00000065057|P78549-3|NTHL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2510070800781	2	487.251089	972.487624	0.015738	7.6681E-06	-0.18051	-8.7954E-05	-0.16477	-8.0285E-05	487.2509575269267	25.335	0.77931	25.279	25.074	25.854	-0.055931					56	26	3	0	0	0	0.0048951	1	4036	4036		87.258	41.559	1	246660			43993	803	25476	25477	53484	53484					0.0002798916684696451
SPEETRAAL	9	Unmodified	_SPEETRAAL_					0	0	0		nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1;ENST00000561862.5_1_16:2089927-2090351:-|nuORF;ENST00000562951.5_1_16:2089927-2094062:-|nuORF;ENST00000567727.5_1_16:2089927-2093790:-|nuORF;ENST00000561841.1_1_16:2089927-2093675:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF	nc|ENSG00000065057|P78549-3|NTHL1	nc|ENSG00000065057|P78549-3|NTHL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.25067138671875	2	487.251089	972.487624	-0.051199	-2.4947E-05	-0.18912	-9.215E-05	-0.24032	-0.0001171	487.2509490137425	25.383	0.78957	25.352	25.098	25.888	-0.03141					45	27	3	0	0	0	0.022205	2	4008	4008;4060		63.227	36.959	1	266100			43994	803	25476	25477	53485;53486	53485					0.0002798916684696451
SPEGPSFRQ	9	Unmodified	_SPEGPSFRQ_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.885986328125	2	502.743431	1003.47231	-0.023804	-1.1967E-05	-0.12155	-6.1108E-05	-0.14535	-7.3075E-05	502.7437520413734	14.111	0.25954	14.006	13.79	14.049	-0.10466					14	8	3	0	0	0	0.25706	1	586	586		6.7232	0	1	54189			43995	12881;7561	25477	25478	53487	53487					-0.029288776303360464
SPELIRVQL	9	Unmodified	_SPELIRVQL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.8164672851562	2	527.816399	1053.61824	0.55171	0.0002912	0.29841	0.0001575	0.85011	0.0004487	527.816473438619	57.915	1.2833	57.898	57.631	58.914	-0.0172					71	46	2	0	0	0	0.11813	1	14207	14207		35.612	11.822	1	2448200			43996	8284	25478	25479	53488	53488					0.09358004885712035
SPELPLMEL	9	Unmodified	_SPELPLMEL_					0	0	0		ENST00000432731.2_1_1:111390701-111391313:-|nuORF;nc|ENSG00000148572|Q96F24-2|NRBF2;nc|ENSG00000148572|Q96F24-3|NRBF2;ENSG00000148572|ENST00000277746|NRBF2	ENST00000432731.2_1_1:111390701-111391313:-|nuORF	ENST00000432731.2_1_1:111390701-111391313:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7706909179688	2	514.770268	1027.52598	0.31097	0.00016008	0.52123	0.00026831	0.8322	0.00042839	514.7703755609828	87.847	0.88185	87.937	87.666	88.548	0.089203					121	46	3	0	0	0	0.25314	1	23208	23208		15.847	0	1	1617200			43997	4819	25479	25480	53489	53489					0.013321587571908822
SPELSRLIS	9	Unmodified	_SPELSRLIS_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7750549316406	2	501.284931	1000.55531	0.25517	0.00012791	1.5292	0.00076656	1.7844	0.00089447	501.78758732911524	26.057	0.4927	26.035	25.774	26.266	-0.022238					39	17	3	0	0	0	0.20651	1	4264	4264		14.838	0	1	309830			43998	342	25480	25481	53490	53490					0.05505439097669296
SPEPRRPAP	9	Unmodified	_SPEPRRPAP_					0	0	0		ENSG00000198824|ENST00000361283|CHAMP1	ENSG00000198824|ENST00000361283|CHAMP1	ENSG00000198824|ENST00000361283|CHAMP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.76556396484375	2	503.775065	1005.53558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.347	1	23.302	22.802	23.802	-0.044867								0	0	0	0.24311	1	3418	3418		8.5933	0.68312	1				43999	8134	25481	25482	53491	53491					0.033031078775593414
SPEPVKRQLSI	11	Unmodified	_SPEPVKRQLSI_					0	0	0		ENST00000263083.10_1_17:1946394-1946592:+|nuORF	ENST00000263083.10_1_17:1946394-1946592:+|nuORF	ENST00000263083.10_1_17:1946394-1946592:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5784606933594	3	418.578588	1252.71394	0.15257	6.3864E-05	-0.68234	-0.00028561	-0.52976	-0.00022175	418.5782850072136	23.467	0.96371	23.427	23.201	24.165	-0.040163					59	23	3	0	0	0	0.37764	1	3495	3495		14.171	0	1	357170			44000	8995	25482	25483	53492	53492					0.09768733005944341
SPEQKAEL	8	Unmodified	_SPEQKAEL_					0	0	0		ENSG00000221838|ENST00000359593|AP4M1	ENSG00000221838|ENST00000359593|AP4M1	ENSG00000221838|ENST00000359593|AP4M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.23443603515625	2	451.234907	900.455261	0.24759	0.00011172	-1.4445	-0.0006518	-1.1969	-0.00054008	451.23414211856345	20.487	0.59015	20.487	20.263	20.853	0					27	20	2	0	0	0	0.15072	1	2543	2543		51.63	5.6089	1	140020			44001	8423	25483	25484	53493	53493					0.001052017638471625
SPEQKAEL	8	Unmodified	_SPEQKAEL_					0	0	0		ENSG00000221838|ENST00000359593|AP4M1	ENSG00000221838|ENST00000359593|AP4M1	ENSG00000221838|ENST00000359593|AP4M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.234130859375	2	451.234907	900.455261	0.43633	0.00019689	0.22346	0.00010083	0.65979	0.00029772	451.23386855245394	20.69	0.84608	20.58	20.188	21.034	-0.11003					45	30	3	0	0	0	0.1286	1	2611	2611		55.503	9.8031	1	118150			44002	8423	25483	25484	53494	53494					0.001052017638471625
SPEQKAEL	8	Unmodified	_SPEQKAEL_					0	0	0		ENSG00000221838|ENST00000359593|AP4M1	ENSG00000221838|ENST00000359593|AP4M1	ENSG00000221838|ENST00000359593|AP4M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2345275878906	2	451.234907	900.455261	0.48881	0.00022057	-1.7051	-0.0007694	-1.2163	-0.00054883	451.2339726989679	20.523	0.75092	20.47	20.254	21.005	-0.05291					34	26	2	0	0	0	0.26398	1	2579	2579		34.932	8.6639	1	147420			44003	8423	25483	25484	53495	53495					0.001052017638471625
SPESLRSKV	9	Unmodified	_SPESLRSKV_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;ENST00000468476.1_1_1:40027621-40028049:-|nuORF;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7829284667969	2	501.782556	1001.55056	0.42784	0.00021468	-0.67532	-0.00033886	-0.24748	-0.00012418	501.7821921744048	21.342	0.65393	21.342	20.973	21.627	0					45	22	3	0	0	0	0.19905	1	2832	2832		23.79	6.6769	1	86431			44004	938;1384	25484	25485	53496	53496					0.04984554954921805
SPESLRSKV	9	Unmodified	_SPESLRSKV_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;ENST00000468476.1_1_1:40027621-40028049:-|nuORF;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2561340332031	2	501.782556	1001.55056	0.51129	0.00025656	-0.65491	-0.00032862	-0.14362	-7.2067E-05	501.7820503395642	21.396	0.51391	21.296	21.043	21.557	-0.10034					38	17	3	0	0	0	0.24429	1	2819	2819		18.373	8.99	1	163680			44005	938;1384	25484	25485	53497	53497					0.04984554954921805
SPETVKKGN	9	Unmodified	_SPETVKKGN_					0	0	0			REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2453918457031	2	480.261456	958.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.84	1	45.9	45.4	46.4	0.059834								0	0	0	0.20639	1	10275	10275		20.454	2.3186	1		+		44006	15447	25485	25486	53498	53498					0.02744579546526893
SPEVGRLSL	9	Unmodified	_SPEVGRLSL_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-8|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2720642089844	2	479.271824	956.529095	0.41585	0.00019931	2.6968	0.0012925	3.1126	0.0014918	479.2719348398294	45.911	0.65778	45.911	45.614	46.271	0					66	23	4	0	0	0	0.014058	1	10310	10310		73.196	23.263	1	980620			44007	3536	25486	25487	53499	53499					0.04909169926202139
SPEVGRLSL	9	Unmodified	_SPEVGRLSL_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-8|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2724304199219	2	479.271824	956.529095	0.17122	8.2062E-05	3.2739	0.0015691	3.4451	0.0016511	479.271960361951	45.776	0.67486	45.835	45.505	46.18	0.059837					70	23	4	0	0	0	0.0083763	2	10243	10243;10291		81.915	30.5	1	979100			44008	3536	25486	25487	53500;53501	53500					0.04909169926202139
SPEVGRLSL	9	Unmodified	_SPEVGRLSL_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-8|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2720031738281	2	479.271824	956.529095	0.45593	0.00021852	2.633	0.0012619	3.0889	0.0014804	479.2718452005191	45.747	0.65732	45.812	45.516	46.174	0.065048					57	23	3	0	0	0	0.016571	1	10249	10249		69.338	23.317	1	1170300			44009	3536	25486	25487	53502	53502					0.04909169926202139
SPFDLPPLN	9	Unmodified	_SPFDLPPLN_					0	0	0			REV__ENST00000432731.2_1_1:111390701-111391313:-|nuORF	REV__ENST00000432731.2_1_1:111390701-111391313:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.279296875	2	500.260925	998.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.583	1	59.583	59.083	60.083	0								0	0	0	0.17683	1	14516	14516		28.487	3.0875	1		+		44010	16428	25487	25488	53503	53503					0.007983651776271472
SPFFREAL	8	Unmodified	_SPFFREAL_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.75616455078125	2	483.75581	965.497067	0.28621	0.00013846	0.38378	0.00018565	0.66999	0.00032411	483.7559178981296	52.748	0.59521	52.748	52.494	53.09	0					57	21	4	0	0	0	0.15072	2	12405	12405;12456		51.63	26.23	1	2126000			44011	6783	25488	25489	53504;53505	53504					0.012938022430489582
SPFFREAL	8	Unmodified	_SPFFREAL_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.75616455078125	2	483.75581	965.497067	0.43061	0.00020831	0.18476	8.9378E-05	0.61537	0.00029769	483.75579451239213	52.719	0.74998	52.77	52.465	53.215	0.050575					59	26	3	0	0	0	0.15072	2	12385	12385;12439		51.63	19.324	1	2008800			44012	6783	25488	25489	53506;53507	53506					0.012938022430489582
SPFFREAL	8	Unmodified	_SPFFREAL_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.756103515625	2	483.75581	965.497067	0.28699	0.00013883	0.41825	0.00020233	0.70524	0.00034116	483.75590667447926	52.943	0.80315	52.933	52.679	53.482	-0.0096054					70	29	4	0	0	0	0.10249	2	12441	12441;12487		60.074	20.117	1	2014300			44013	6783	25488	25489	53508;53509	53508					0.012938022430489582
SPFFRNLL	8	Unmodified	_SPFFRNLL_					0	0	0		ENST00000554644.1_1_14:93723510-93760888:-|nuORF;nc|ENSG00000011114|Q9P203-3|BTBD7;ENSG00000011114|ENST00000334746|BTBD7	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2794189453125	2	497.279452	992.544351	0.5032	0.00025023	-0.22106	-0.00010993	0.28214	0.0001403	497.27926778061436	64.652	0.50916	64.642	64.415	64.924	-0.0095291					38	17	3	0	0	0	0.077335	1	16090	16090		65.235	31.048	1	305920			44014	433	25489	25490	53510	53510					0.047780815140413324
SPFFRNLL	8	Unmodified	_SPFFRNLL_					0	0	0		ENST00000554644.1_1_14:93723510-93760888:-|nuORF;nc|ENSG00000011114|Q9P203-3|BTBD7;ENSG00000011114|ENST00000334746|BTBD7	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	497.279452	992.544351	0.58888	0.00029284	-0.46975	-0.0002336	0.11913	5.924E-05	497.2792358336419	64.627	0.51537	64.627	64.342	64.858	0	0.014848	-7.3545E-05	NaN	65.235	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246200			44015	433	25489	25490							0.047780815140413324
SPFFRNLL	8	Unmodified	_SPFFRNLL_					0	0	0		ENST00000554644.1_1_14:93723510-93760888:-|nuORF;nc|ENSG00000011114|Q9P203-3|BTBD7;ENSG00000011114|ENST00000334746|BTBD7	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.279452	992.544351	0.56224	0.00027959	-0.56491	-0.00028092	-0.0026666	-1.3261E-06	497.2792769233719	64.474	0.54605	64.566	64.363	64.909	0.09288	-0.045229	-0.00016819	NaN	65.235	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246290			44016	433	25489	25490							0.047780815140413324
SPFFSWRTQI	10	Unmodified	_SPFFSWRTQI_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.5520324707031	3	423.552262	1267.63496	-0.33767	-0.00014302	-0.67785	-0.00028711	-1.0155	-0.00043013	423.5520481671181	15.167	0.51715	15.167	14.981	15.498	0					53	17	5	0	0	0	0.35624	1	951	951		11.518	0	1	149150			44017	5601	25490	25491	53511	53511					0.011845057716755036
SPFFSWRTQI	10	Unmodified	_SPFFSWRTQI_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	423.552262	1267.63496	-0.28172	-0.00011932	-0.47303	-0.00020035	-0.75475	-0.00031968	423.55202999582343	15.361	0.45378	15.251	15.01	15.464	-0.10982	0.014339	0.00010061	NaN	11.518	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143000			44018	5601	25490	25491							0.011845057716755036
SPFFSWRTQI	10	Unmodified	_SPFFSWRTQI_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	423.552262	1267.63496	-0.29106	-0.00012328	-0.58771	-0.00024893	-0.87877	-0.00037221	423.5520076812071	15.357	0.417	15.292	15.128	15.545	-0.064414	0.055743	-4.5113E-05	NaN	11.518	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161110			44019	5601	25490	25491							0.011845057716755036
SPFKRQLSL	9	Unmodified	_SPFKRQLSL_					0	0	0		nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;ENST00000557486.1_1_14:73748983-73753845:-|nuORF;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENSG00000105245|ENST00000252891|NUMBL	nc|ENSG00000133961|P49757-4|NUMB;ENSG00000105245|ENST00000252891|NUMBL	nc|ENSG00000133961|P49757-4|NUMB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.3171997070312	2	538.316566	1074.61858	0.86163	0.00046383	-0.41965	-0.00022591	0.44198	0.00023792	538.3162648917578	37.506	0.82702	37.506	37.207	38.034	0					60	29	4	0	0	0	0.082647	1	7717	7717		61.602	9.9721	1	1022600			44020	3741;1957	25491	25492	53512	53512					0.08425424605570697
SPFKRQLSL	9	Unmodified	_SPFKRQLSL_					0	0	0		nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;ENST00000557486.1_1_14:73748983-73753845:-|nuORF;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENSG00000105245|ENST00000252891|NUMBL	nc|ENSG00000133961|P49757-4|NUMB;ENSG00000105245|ENST00000252891|NUMBL	nc|ENSG00000133961|P49757-4|NUMB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.3173217773438	2	538.316566	1074.61858	0.47342	0.00025485	0.53627	0.00028868	1.0097	0.00054354	538.3169708352328	37.416	0.52272	37.503	37.218	37.741	0.087406					46	18	3	0	0	0	0.059987	1	7682	7682		70.332	22.583	1	982920			44021	3741;1957	25491	25492	53513	53513					0.08425424605570697
SPFKRQLSL	9	Unmodified	_SPFKRQLSL_					0	0	0		nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;ENST00000557486.1_1_14:73748983-73753845:-|nuORF;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENSG00000105245|ENST00000252891|NUMBL	nc|ENSG00000133961|P49757-4|NUMB;ENSG00000105245|ENST00000252891|NUMBL	nc|ENSG00000133961|P49757-4|NUMB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.317138671875	2	538.316566	1074.61858	0.56467	0.00030397	-0.13699	-7.3746E-05	0.42768	0.00023023	538.316304861741	37.33	0.92056	37.423	37.197	38.118	0.093018					65	33	3	0	0	0	0.059987	1	7671	7671		70.332	18.917	1	1049200			44022	3741;1957	25491	25492	53514	53514					0.08425424605570697
SPFLRIGL	8	Unmodified	_SPFLRIGL_					0	0	0		PRKCQ|p.Q43Rfs*32|1|0.25|ENSG00000065675|chr10:6511187-6511187|C/-|frameshift_variant;ENST00000539722.5_1_10:6540508-6557097:-|nuORF;nc|ENSG00000065675|Q04759-2|PRKCQ;ENSG00000065675|ENST00000263125|PRKCQ	PRKCQ|p.Q43Rfs*32|1|0.25|ENSG00000065675|chr10:6511187-6511187|C/-|frameshift_variant	PRKCQ|p.Q43Rfs*32|1|0.25|ENSG00000065675|chr10:6511187-6511187|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7764892578125	2	451.776545	901.538538	0.19849	8.9674E-05	-0.19021	-8.5933E-05	0.0082822	3.7417E-06	451.7763375255264	63.108	0.56859	63.108	62.905	63.474	0					46	20	3	0	0	0	0.050146	1	15618	15618		78.149	36.055	1	715220			44023	823	25492	25493	53515	53515					0.08382983002377387
SPFLRIGL	8	Unmodified	_SPFLRIGL_					0	0	0		PRKCQ|p.Q43Rfs*32|1|0.25|ENSG00000065675|chr10:6511187-6511187|C/-|frameshift_variant;ENST00000539722.5_1_10:6540508-6557097:-|nuORF;nc|ENSG00000065675|Q04759-2|PRKCQ;ENSG00000065675|ENST00000263125|PRKCQ	PRKCQ|p.Q43Rfs*32|1|0.25|ENSG00000065675|chr10:6511187-6511187|C/-|frameshift_variant	PRKCQ|p.Q43Rfs*32|1|0.25|ENSG00000065675|chr10:6511187-6511187|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7763671875	2	451.776545	901.538538	0.23888	0.00010792	-0.3227	-0.00014579	-0.083811	-3.7864E-05	451.7762446888493	63.04	0.62361	63.136	62.854	63.477	0.095722					50	22	3	0	0	0	0.050146	1	15573	15573		78.149	33.742	1	824630			44024	823	25492	25493	53516	53516					0.08382983002377387
SPFLRIGL	8	Unmodified	_SPFLRIGL_					0	0	0		PRKCQ|p.Q43Rfs*32|1|0.25|ENSG00000065675|chr10:6511187-6511187|C/-|frameshift_variant;ENST00000539722.5_1_10:6540508-6557097:-|nuORF;nc|ENSG00000065675|Q04759-2|PRKCQ;ENSG00000065675|ENST00000263125|PRKCQ	PRKCQ|p.Q43Rfs*32|1|0.25|ENSG00000065675|chr10:6511187-6511187|C/-|frameshift_variant	PRKCQ|p.Q43Rfs*32|1|0.25|ENSG00000065675|chr10:6511187-6511187|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.77642822265625	2	451.776545	901.538538	0.19638	8.872E-05	-0.28865	-0.00013041	-0.092272	-4.1686E-05	451.7763195032353	63.119	0.67886	63.111	62.913	63.592	-0.0085526					46	24	3	0	0	0	0.050146	2	15604	15604;15653		78.149	33.742	1	694280			44025	823	25492	25493	53517;53518	53517					0.08382983002377387
SPFLTITSM	9	Oxidation (M)	_SPFLTITSM(Oxidation (M))_		SPFLTITSM(1)		SPFLTITSM(85)	0	0	1		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3258361816406	2	506.754618	1011.49468	0.33204	0.00016826	1.0898	0.00055228	1.4219	0.00072055	506.755416552421	62.974	1.1309	62.974	62.476	63.607	0					70	41	2	0	0	0	0.0063774	1	15576	15576		85.272	33.004	1	3823800			44026	5753	25493	25494	53519	53519		681			-0.010604142769125247
SPFLTITSM	9	Oxidation (M)	_SPFLTITSM(Oxidation (M))_		SPFLTITSM(1)		SPFLTITSM(92)	0	0	1		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2799377441406	2	506.754618	1011.49468	0.35769	0.00018126	1.1069	0.00056091	1.4646	0.00074217	506.7554030181598	62.841	1.1836	62.936	62.355	63.539	0.095722					74	42	2	0	0	0	0.0011947	1	15516	15516		92.491	24.411	1	3352500			44027	5753	25493	25494	53520	53520		681			-0.010604142769125247
SPFLTITSM	9	Oxidation (M)	_SPFLTITSM(Oxidation (M))_		SPFLTITSM(1)		SPFLTITSM(85)	0	0	1		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.280517578125	2	506.754618	1011.49468	0.25666	0.00013006	1.3602	0.00068929	1.6169	0.00081936	506.7555444758611	62.942	0.9361	62.934	62.542	63.478	-0.0085526					66	34	2	0	0	0	0.0063774	1	15548	15548		85.272	33.004	1	3676700			44028	5753	25493	25494	53521	53521		681			-0.010604142769125247
SPFPDIPKV	9	Unmodified	_SPFPDIPKV_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000435945.1_1_Y:28761086-28769767:-|nuORF;ENST00000446672.2_1_13:19955792-19968894:+|nuORF	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2793884277344	2	500.279118	998.543683	0.19631	9.8211E-05	0.45638	0.00022832	0.65269	0.00032653	500.27930162516134	59.578	0.92557	59.578	59.024	59.949	0					66	32	3	0	0	0	0.015027	1	14560	14560		71.708	47.687	1	1435100			44029	1775	25494	25495	53522	53522					0.04435242074339385
SPFPDIPKV	9	Unmodified	_SPFPDIPKV_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000435945.1_1_Y:28761086-28769767:-|nuORF;ENST00000446672.2_1_13:19955792-19968894:+|nuORF	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2792663574219	2	500.279118	998.543683	0.275	0.00013757	0.42259	0.00021142	0.69759	0.00034899	500.2792049224241	59.426	0.77471	59.519	59.079	59.854	0.093185					63	27	3	0	0	0	0.020591	1	14453	14453		87.258	56.622	1	1250800			44030	1775	25494	25495	53523	53523					0.04435242074339385
SPFPDIPKV	9	Unmodified	_SPFPDIPKV_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;ENST00000435945.1_1_Y:28761086-28769767:-|nuORF;ENST00000446672.2_1_13:19955792-19968894:+|nuORF	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2793273925781	2	500.279118	998.543683	0.4856	0.00024294	0.30348	0.00015183	0.78908	0.00039476	500.27919248421165	59.539	0.85173	59.528	59.034	59.886	-0.011486					69	29	3	0	0	0	0.0045319	2	14502	14502;14557		90.135	44.114	1	1703100			44031	1775	25494	25495	53524;53525	53524					0.04435242074339385
SPFQSSPLSL	10	Unmodified	_SPFQSSPLSL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;ENST00000469356.3_1_17:17720899-17721766:-|nuORF;ENST00000580540.1_1_17:17720525-17721213:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7774658203125	2	531.776939	1061.53933	0.54157	0.000288	0.77942	0.00041448	1.321	0.00070247	531.7773099535049	68.573	0.68777	68.554	68.315	69.003	-0.019157					47	24	3	0	0	0	0.017732	1	17248	17248		74.2	2.2774	1	595620			44032	977	25495	25496	53526	53526					0.011017328607749732
SPFSRKLDL	9	Unmodified	_SPFSRKLDL_					0	0	0		nc|ENSG00000163947|Q9NR81-3|ARHGEF3;ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3;nc|ENSG00000163947|Q9NR81-4|ARHGEF3;nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1	nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.32958984375	2	531.800749	1061.58694	0.25939	0.00013794	0.60277	0.00032055	0.86216	0.0004585	531.8014154693661	40.92	0.40058	41.017	40.777	41.177	0.096622					22	14	2	0	0	0	0.12329	1	8748	8748		49.554	9.3151	1	266090			44033	12801;6755	25496	25497	53527	53527					0.05861431851622001
SPFSRKLDL	9	Unmodified	_SPFSRKLDL_					0	0	0		nc|ENSG00000163947|Q9NR81-3|ARHGEF3;ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3;nc|ENSG00000163947|Q9NR81-4|ARHGEF3;nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1	nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.800749	1061.58694	0.31298	0.00016644	-0.35002	-0.00018614	-0.037035	-1.9695E-05	531.8013076254995	41.289	0.37239	41.289	41.069	41.441	0	0.16241	-0.0008447	NaN	45.74	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319360			44034	12801;6755	25496	25497							0.05861431851622001
SPFSRKLDL	9	Unmodified	_SPFSRKLDL_					0	0	0		nc|ENSG00000163947|Q9NR81-3|ARHGEF3;ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3;nc|ENSG00000163947|Q9NR81-4|ARHGEF3;nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1	nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	531.800749	1061.58694	0.40566	0.00021573	0.57187	0.00030412	0.97753	0.00051985	531.8011659838655	40.984	0.44506	41.074	40.77	41.215	0.090252	-0.052521	0.00013581	NaN	45.74	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326090			44035	12801;6755	25496	25497							0.05861431851622001
SPFSSAFNSL	10	Unmodified	_SPFSSAFNSL_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN;nc|ENSG00000205978|Q9P2P1-2|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.81396484375	2	528.753464	1055.49238	0.47625	0.00025182	1.5353	0.0008118	2.0116	0.0010636	528.7543531215205	71.673	0.73997	71.729	71.43	72.17	0.056572					41	26	2	0	0	0	0.26905	1	18192	18192		19.362	10.617	1	200700			44036	8310	25497	25498	53528	53528					-0.03315126690381476
SPFSYKNVL	9	Unmodified	_SPFSYKNVL_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7819213867188	2	527.782025	1053.5495	0.63863	0.00033705	-0.23057	-0.00012169	0.40806	0.00021537	527.7818576736978	53.441	0.50081	53.441	53.173	53.674	0					45	18	3	0	0	0	0.0045319	1	12603	12603		90.135	66.114	1	952560			44037	4903	25498	25499	53529	53529					0.024863405860060084
SPFSYKNVL	9	Unmodified	_SPFSYKNVL_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7820434570312	2	527.782025	1053.5495	0.4546	0.00023993	-0.13012	-6.8676E-05	0.32448	0.00017126	527.7819773504651	53.356	0.4938	53.413	53.221	53.714	0.056259					45	18	3	0	0	0	0.015027	1	12596	12596		71.708	47.687	1	1008200			44038	4903	25498	25499	53530	53530					0.024863405860060084
SPFSYKNVL	9	Unmodified	_SPFSYKNVL_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3143920898438	2	527.782025	1053.5495	0.59309	0.00031302	-0.49065	-0.00025896	0.10244	5.4064E-05	527.7818890900533	53.668	0.52234	53.659	53.377	53.899	-0.0096054					54	19	4	0	0	0	0.081941	1	12662	12662		63.227	45.081	1	1076000			44039	4903	25498	25499	53531	53531					0.024863405860060084
SPGERATL	8	Unmodified	_SPGERATL_					0	0	0		nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000239951|P01619|IGKV3-20;nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20;nc|ENSG00000228325|A0A0C4DH55|IGKV3D-7	nc|ENSG00000244437|P01624|IGKV3-15	nc|ENSG00000244437|P01624|IGKV3-15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.212158203125	2	415.721967	829.429381	0.48739	0.00020262	-1.7369	-0.00072206	-1.2495	-0.00051944	415.721405410455	20.558	1.0495	20.447	19.958	21.007	-0.11003					71	37	3	0	0	0	0.24708	1	2568	2568		38.176	0	1	732040			44040	12920	25499	25500	53532	53532					0.00784352312223291
SPGERATL	8	Unmodified	_SPGERATL_					0	0	0		nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000239951|P01619|IGKV3-20;nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20;nc|ENSG00000228325|A0A0C4DH55|IGKV3D-7	nc|ENSG00000244437|P01624|IGKV3-15	nc|ENSG00000244437|P01624|IGKV3-15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.2121276855469	2	415.721967	829.429381	0.51181	0.00021277	-2.3224	-0.00096548	-1.8106	-0.00075271	415.72126930138353	20.459	1.0702	20.406	19.906	20.977	-0.05291					91	38	4	0	0	0	0.27906	1	2535	2535		21.537	0	1	699230			44041	12920	25499	25500	53533	53533					0.00784352312223291
SPGGAGGH	8	Unmodified	_SPGGAGGH_					0	0	0			REV__ENSG00000108106|ENST00000264552|UBE2S	REV__ENSG00000108106|ENST00000264552|UBE2S	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	639.2844848632812	1	639.284514	638.277237	0.55715	0.00035618	-0.36832	-0.00023546	0.18883	0.00012072	639.284315557719	81.508	1.4585	81.484	80.762	82.22	-0.02404					85	61	2	0	0	0	0.46692	1	21047	21047		0	0	1	212140	+		44042	14583	25500	25501	53534	53534					-0.05637003644676497
SPGGPRAAV	9	Unmodified	_SPGGPRAAV_					0	0	0		ENST00000460658.5_1_22:31492537-31495228:+|nuORF;nc|ENSG00000183963|P53814-2|SMTN;ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN	ENST00000460658.5_1_22:31492537-31495228:+|nuORF	ENST00000460658.5_1_22:31492537-31495228:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2245178222656	2	406.224677	810.434801	-0.23174	-9.4141E-05	0.2333	9.4774E-05	0.0015586	6.3314E-07	406.2246743746627	19.132	0.99354	19.015	18.647	19.64	-0.11739					56	34	2	0	0	0	0.075169	1	2132	2132		62.573	12.64	1	268390			44043	7422	25501	25502	53535	53535					0.022000758947001486
SPGGPRAAV	9	Unmodified	_SPGGPRAAV_					0	0	0		ENST00000460658.5_1_22:31492537-31495228:+|nuORF;nc|ENSG00000183963|P53814-2|SMTN;ENSG00000183963|ENST00000333137|SMTN;nc|ENSG00000183963|P53814|SMTN;nc|ENSG00000183963|P53814-6|SMTN	ENST00000460658.5_1_22:31492537-31495228:+|nuORF	ENST00000460658.5_1_22:31492537-31495228:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.22454833984375	2	406.224677	810.434801	-0.22531	-9.1525E-05	0.17211	6.9915E-05	-0.053197	-2.161E-05	406.2246434257231	19.112	0.88405	19.055	18.739	19.623	-0.056303					51	30	2	0	0	0	0.23235	1	2149	2149		21.537	3.3906	1	247670			44044	7422	25501	25502	53536	53536					0.022000758947001486
SPGIIFIPG	9	Unmodified	_SPGIIFIPG_					0	0	0		ENST00000497293.1_1_3:111697881-111700815:+|nuORF;nc|ENSG00000144827|Q9NUJ1-3|ABHD10;ENSG00000144827|ENST00000273359|ABHD10	ENST00000497293.1_1_3:111697881-111700815:+|nuORF	ENST00000497293.1_1_3:111697881-111700815:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.76300048828125	2	450.763104	899.511654	0.29368	0.00013238	-0.56473	-0.00025456	-0.27105	-0.00012218	450.7627916766208	77.122	1.3283	77.122	76.252	77.58	0					83	48	2	0	0	0	0.23783	1	19872	19872		12.532	0.89125	1	438980			44045	4617	25502	25503	53537	53537					0.05787874391182868
SPGIVSQELRM	11	Unmodified	_SPGIVSQELRM_					0	0	0		ENSG00000145721|ENST00000274382|LIX1	ENSG00000145721|ENST00000274382|LIX1	ENSG00000145721|ENST00000274382|LIX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.22454833984375	3	406.216662	1215.62816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.162	1	19.106	18.606	19.606	-0.055693								0	0	0	0.36872	1	2149	2149		4.1166	0	1				44046	4667	25503	25504	53538	53538					0.028968248287583265
SPGLIHGREV	10	Unmodified	_SPGLIHGREV_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7962036132812	2	532.795998	1063.57744	0.59902	0.00031916	-0.13545	-7.217E-05	0.46357	0.00024699	532.7958021870039	29.01	0.96486	29.01	28.64	29.605	0					77	34	4	0	0	0	0.3258	1	5143	5143		17.113	0	1	877780			44047	4054	25504	25505	53539	53539					0.048196635660815446
SPGLLRMLETV	11	Unmodified	_SPGLLRMLETV_					0	0	0			REV__ENST00000554651.5_1_14:23417204-23426210:-|nuORF	REV__ENST00000554651.5_1_14:23417204-23426210:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.2245788574219	3	405.897041	1214.66929	-0.26197	-0.00010633	0.86296	0.00035027	0.601	0.00024394	405.8976352676378	18.717	0.67463	18.717	18.391	19.066	0					52	23	4	0	0	0	0.44966	1	2085	2085		4.7159	0.30977	1	57055	+		44048	14074	25505	25506	53540	53540					0.07054585868240792
SPGLLRMLETV	11	Unmodified	_SPGLLRMLETV_					0	0	0			REV__ENST00000554651.5_1_14:23417204-23426210:-|nuORF	REV__ENST00000554651.5_1_14:23417204-23426210:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2245178222656	3	405.897041	1214.66929	-0.2671	-0.00010841	1.1144	0.00045235	0.84735	0.00034394	405.8975904299802	18.978	0.70033	18.86	18.414	19.114	-0.11739					52	24	3	0	0	0	0.46554	1	2132	2132		2.6312	0.19645	1	73735	+		44049	14074	25505	25506	53541	53541					0.07054585868240792
SPGLRDVAL	9	Unmodified	_SPGLRDVAL_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7822570800781	2	464.266542	926.51853	0.10399	4.8279E-05	0.39331	0.0001826	0.4973	0.00023088	464.266530089886	45.069	0.75946	45.069	44.771	45.53	0					49	27	4	0	0	0	0.048871	1	10068	10068		53.317	16.811	1	626240			44050	1445	25506	25507	53542	53542					0.052331872717559236
SPGLRDVAL	9	Unmodified	_SPGLRDVAL_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7821960449219	2	464.266542	926.51853	0.098089	4.5539E-05	0.024945	1.1581E-05	0.12303	5.7121E-05	464.26637327313335	44.864	0.8023	44.932	44.711	45.514	0.068569					46	28	3	0	0	0	0.048871	1	10003	10003		53.317	9.5443	1	623650			44051	1445	25506	25507	53543	53543					0.052331872717559236
SPGLRDVAL	9	Unmodified	_SPGLRDVAL_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7822265625	2	464.266542	926.51853	0.35935	0.00016683	-0.32793	-0.00015225	0.031418	1.4586E-05	464.266151790698	44.909	0.74804	44.984	44.723	45.471	0.075047					42	27	2	0	0	0	0.038291	1	9995	9995		57.249	17.299	1	601990			44052	1445	25506	25507	53544	53544					0.052331872717559236
SPGLVTTGAPA	11	Unmodified	_SPGLVTTGAPA_					0	0	0			REV__ENST00000411463.2_2_8:23147392-23147584:+|nuORF	REV__ENST00000411463.2_2_8:23147392-23147584:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7638244628906	2	485.763832	969.513111	0.13454	6.5354E-05	-0.017138	-8.3251E-06	0.1174	5.7029E-05	485.76374763365794	23.617	0.79148	23.544	23.206	23.997	-0.072559					65	27	3	0	0	0	0.39234	1	3541	3541		12.241	0	1	605680	+		44053	20772	25507	25508	53545	53545					0.027134636892697017
SPGNALRSSL	10	Unmodified	_SPGNALRSSL_					0	0	0		nc|ENSG00000157765|O95436-2|SLC34A2;ENSG00000157765|ENST00000382051|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.27264404296875	2	501.272355	1000.53016	0.53735	0.00026936	2.7853	0.0013962	3.3226	0.0016656	501.27357949762694	33.941	0.8882	34.008	33.76	34.648	0.06636					58	31	2	0	0	0	0.00086845	1	6626	6626		122.57	67.335	1	325660			44054	5324	25508	25509	53546	53546					0.02991384295091848
SPGNALRSSL	10	Unmodified	_SPGNALRSSL_					0	0	0		nc|ENSG00000157765|O95436-2|SLC34A2;ENSG00000157765|ENST00000382051|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	501.272355	1000.53016	0.47707	0.00023914	2.9132	0.0014603	3.3903	0.0016995	501.273825174338	34.119	0.63654	34.119	33.891	34.528	0	0.07436	5.0123E-05	NaN	122.57	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333960			44055	5324	25508	25509							0.02991384295091848
SPGNALRSSL	10	Unmodified	_SPGNALRSSL_					0	0	0		nc|ENSG00000157765|O95436-2|SLC34A2;ENSG00000157765|ENST00000382051|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	501.272355	1000.53016	0.1877	9.4087E-05	2.8865	0.0014469	3.0742	0.001541	501.2736944136576	33.941	0.83784	34.008	33.739	34.577	0.066704	-0.037067	2.3396E-05	NaN	122.57	61	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297790			44056	5324	25508	25509							0.02991384295091848
SPGQPSKCVT	10	Unmodified	_SPGQPSKCVT_					0	0	0		ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	ENSG00000113658|ENST00000545279|SMAD5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2475891113281	2	502.247492	1002.48043	0.060047	3.0158E-05	0.093175	4.6797E-05	0.15322	7.6955E-05	502.2475490606951	25.743	0.34321	25.704	25.5	25.843	-0.038671					25	11	3	0	0	0	0.31515	1	4169	4169		12.241	1.4167	1	459050			44057	2522	25509	25510	53547	53547					-0.02071066705229896
SPGQRSISL	9	Unmodified	_SPGQRSISL_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7615661621094	2	472.761623	943.508694	0.16303	7.7077E-05	0.33827	0.00015992	0.50131	0.000237	472.76156728948075	31.912	0.64607	31.912	31.745	32.391	0					38	22	3	0	0	0	0.043673	1	6032	6032		55.249	26.754	1	700520			44058	1472	25510	25511	53548	53548					0.03467999266388233
SPGQRSISL	9	Unmodified	_SPGQRSISL_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7618408203125	2	472.761623	943.508694	0.30962	0.00014637	0.055751	2.6357E-05	0.36537	0.00017273	472.7616465299442	31.875	0.5956	31.917	31.709	32.305	0.042366					32	20	3	0	0	0	0.019446	1	6001	6001		64.927	28.421	1	795310			44059	1472	25510	25511	53549	53549					0.03467999266388233
SPGQRSISL	9	Unmodified	_SPGQRSISL_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.76239013671875	2	472.761623	943.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.803	1	31.844	31.344	32.344	0.040991								0	0	0	0.014753	1	5982	5982		73.196	29.338	1				44060	1472	25510	25511	53550	53550					0.03467999266388233
SPGRASIGKT	10	Unmodified	_SPGRASIGKT_					0	0	0			REV__ENSG00000270765|ENST00000604641|GAS2L2	REV__ENSG00000270765|ENST00000604641|GAS2L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7646484375	2	487.274898	972.535243	-0.053279	-2.5962E-05	-0.029187	-1.4222E-05	-0.082466	-4.0184E-05	487.27489483514586	13.804	0.27532	13.804	13.687	13.962	0					18	9	3	0	0	0	0.32054	1	552	552		3.2813	0.70383	1	60039	+		44061	19312	25511	25512	53551	53551					0.04787688157693992
SPGRDINVT	9	Unmodified	_SPGRDINVT_					0	0	0		ENSG00000160613|ENST00000320934|PCSK7	ENSG00000160613|ENST00000320934|PCSK7	ENSG00000160613|ENST00000320934|PCSK7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.26116943359375	2	479.751256	957.487959	0.2769	0.00013284	-0.88568	-0.00042491	-0.60878	-0.00029206	479.7509244933621	21.111	0.77437	21.111	20.853	21.627	0					38	26	2	0	0	0	0.26612	1	2750	2750		13.906	1.3745	1	188950			44062	5474	25512	25513	53552	53552					0.007514088867083046
SPGRDINVT	9	Unmodified	_SPGRDINVT_					0	0	0		ENSG00000160613|ENST00000320934|PCSK7	ENSG00000160613|ENST00000320934|PCSK7	ENSG00000160613|ENST00000320934|PCSK7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.26123046875	2	479.751256	957.487959	0.35035	0.00016808	-0.67598	-0.0003243	-0.32563	-0.00015622	479.7508079534203	21.205	0.7438	21.152	20.886	21.63	-0.052912					40	25	2	0	0	0	0.23007	1	2776	2776		19.257	2.1441	1	149090			44063	5474	25512	25513	53553	53553					0.007514088867083046
SPGTRSPPL	9	Unmodified	_SPGTRSPPL_					0	0	0		ENST00000522720.1_1_8:101733810-101734948:-|nuORF;ENST00000520804.1_1_8:101733810-101734948:-|nuORF	ENST00000522720.1_1_8:101733810-101734948:-|nuORF	ENST00000522720.1_1_8:101733810-101734948:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2748718261719	2	456.250892	910.48723	-0.10383	-4.7373E-05	-0.082408	-3.7599E-05	-0.18624	-8.4971E-05	456.2504008781943	27.48	0.99156	27.458	27.015	28.006	-0.021412					64	34	3	0	0	0	0.25323	1	4566	4566		10.074	0.6908	1	127410			44064	11480	25513	25514	53554	53554					0.028406142376638854
SPGTTEKLSP	10	Unmodified	_SPGTTEKLSP_					0	0	0			REV__ENSG00000162695|ENST00000357650|SLC30A7	REV__ENSG00000162695|ENST00000357650|SLC30A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7671813964844	2	508.766571	1015.51859	0.32913	0.00016745	0.56909	0.00028953	0.89821	0.00045698	508.7667065373276	17.075	0.91248	17.015	16.676	17.588	-0.060429					91	32	4	0	0	0	0.28174	1	1528	1528		22.658	2.2436	1	390180	+		44065	17001	25514	25515	53555	53555					0.011451424810957178
SPGWVRLAL	9	Unmodified	_SPGWVRLAL_					0	0	0		nc|ENSG00000167397|Q9BQB6-3|VKORC1;nc|ENSG00000167397|Q9BQB6-2|VKORC1;ENSG00000167397|ENST00000394975|VKORC1	nc|ENSG00000167397|Q9BQB6-3|VKORC1	nc|ENSG00000167397|Q9BQB6-3|VKORC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7930603027344	2	499.792727	997.5709	0.60377	0.00030176	0.31681	0.00015834	0.92059	0.0004601	499.79282371831096	64.108	0.64815	64.108	63.722	64.37	0					49	23	3	0	0	0	0.0098873	2	15893	15893;15943		79.596	54.197	1	520480			44066	6174	25515	25516	53556;53557	53556					0.07201770405345087
SPGWVRLAL	9	Unmodified	_SPGWVRLAL_					0	0	0		nc|ENSG00000167397|Q9BQB6-3|VKORC1;nc|ENSG00000167397|Q9BQB6-2|VKORC1;ENSG00000167397|ENST00000394975|VKORC1	nc|ENSG00000167397|Q9BQB6-3|VKORC1	nc|ENSG00000167397|Q9BQB6-3|VKORC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7930603027344	2	499.792727	997.5709	0.50599	0.00025289	0.25725	0.00012857	0.76324	0.00038146	499.7928492425122	63.977	0.5981	64.07	63.765	64.363	0.09288					52	21	3	0	0	0	0.0098873	1	15877	15877		79.596	54.197	1	502760			44067	6174	25515	25516	53558	53558					0.07201770405345087
SPGWVRLAL	9	Unmodified	_SPGWVRLAL_					0	0	0		nc|ENSG00000167397|Q9BQB6-3|VKORC1;nc|ENSG00000167397|Q9BQB6-2|VKORC1;ENSG00000167397|ENST00000394975|VKORC1	nc|ENSG00000167397|Q9BQB6-3|VKORC1	nc|ENSG00000167397|Q9BQB6-3|VKORC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7930603027344	2	499.792727	997.5709	0.57227	0.00028602	0.21147	0.00010569	0.78374	0.00039171	499.79272021183806	64.059	0.57039	64.049	63.794	64.364	-0.0095291					47	20	3	0	0	0	0.0046246	2	15890	15890;15948		89.401	64.001	1	477420			44068	6174	25515	25516	53559;53560	53559					0.07201770405345087
SPHATHNG	8	Unmodified	_SPHATHNG_					0	0	0			REV__nc|ENSG859|P60507|ERVFC1	REV__nc|ENSG859|P60507|ERVFC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.5329284667969	2	410.688459	819.362364	-0.065574	-2.693E-05	4.0583	0.0016667	3.9928	0.0016398	410.6916411906389	16.118	0.15911	16.004	15.95	16.11	-0.11434					5	4	2	0	0	0	0.34408	1	1222	1222		2.3027	1.5091	1	6862	+		44069	23265	25516	25517	53561	53561					-0.05454258178860982
SPHFLHTVKY	10	Unmodified	_SPHFLHTVKY_					0	0	0		ENST00000489436.1_1_1:145595040-145598553:-|nuORF	ENST00000489436.1_1_1:145595040-145598553:-|nuORF	ENST00000489436.1_1_1:145595040-145598553:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2192687988281	3	410.220624	1227.64004	0.033644	1.3802E-05	-0.41377	-0.00016974	-0.38012	-0.00015593	410.2207267002773	24.747	1.3527	24.691	24.072	25.425	-0.055931					84	46	2	0	0	0	0.35624	1	3856	3856		11.518	0.61892	1	299270			44070	11150	25517	25518	53562	53562					0.03532809634293699
SPHGETTSV	9	Unmodified	_SPHGETTSV_					0	0	0		ENSG00000266028|ENST00000573034|SRGAP2;ENST00000471256.1_1:206619445-206629134:+|nuORF	ENSG00000266028|ENST00000573034|SRGAP2;ENST00000471256.1_1:206619445-206629134:+|nuORF	ENSG00000266028|ENST00000573034|SRGAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.71441650390625	2	457.714339	913.414125	-0.13507	-6.1822E-05	0.65132	0.00029812	0.51626	0.0002363	457.71448432900496	15.145	0.37769	15.08	14.955	15.333	-0.064413					28	12	3	0	0	0	0.11461	1	953	953		36.127	9.2434	1	193120			44071	8674;10874	25518	25519	53563	53563					-0.04604559275628617
SPHGETTSV	9	Unmodified	_SPHGETTSV_					0	0	0		ENSG00000266028|ENST00000573034|SRGAP2;ENST00000471256.1_1:206619445-206629134:+|nuORF	ENSG00000266028|ENST00000573034|SRGAP2;ENST00000471256.1_1:206619445-206629134:+|nuORF	ENSG00000266028|ENST00000573034|SRGAP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	457.714339	913.414125	-0.19933	-9.1236E-05	0.79254	0.00036276	0.59321	0.00027152	457.71455816935844	15.026	0.50336	15.026	14.845	15.348	0	-0.012545	7.548E-05	NaN	36.127	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189850			44072	8674;10874	25518	25519							-0.04604559275628617
SPHGETTSV	9	Unmodified	_SPHGETTSV_					0	0	0		ENSG00000266028|ENST00000573034|SRGAP2;ENST00000471256.1_1:206619445-206629134:+|nuORF	ENSG00000266028|ENST00000573034|SRGAP2;ENST00000471256.1_1:206619445-206629134:+|nuORF	ENSG00000266028|ENST00000573034|SRGAP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	457.714339	913.414125	-0.087597	-4.0094E-05	0.66869	0.00030607	0.58109	0.00026597	457.7145387905766	15.12	0.49916	15.01	14.847	15.347	-0.10982	-0.028875	-3.7901E-05	NaN	36.127	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153380			44073	8674;10874	25518	25519							-0.04604559275628617
SPHGGALVM	9	Oxidation (M)	_SPHGGALVM(Oxidation (M))_		SPHGGALVM(1)		SPHGGALVM(42)	0	0	1		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7181091308594	2	442.71837	883.422187	0.23196	0.00010269	-0.49065	-0.00021722	-0.25869	-0.00011453	442.7180686403489	20.293	0.78005	20.293	20.073	20.853	0					56	28	3	0	0	0	0.079066	1	2507	2507		42.095	20.348	1	340080			44074	5889	25519	25520	53564	53564		696			-0.024187035598401962
SPHGGALVM	9	Oxidation (M)	_SPHGGALVM(Oxidation (M))_		SPHGGALVM(1)		SPHGGALVM(44)	0	0	1		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.71820068359375	2	442.71837	883.422187	0.3631	0.00016075	-0.56471	-0.00025001	-0.2016	-8.9254E-05	442.71805445410246	20.457	0.76189	20.347	20.132	20.894	-0.11003					55	27	3	0	0	0	0.072844	1	2563	2563		44.407	19.733	1	298130			44075	5889	25519	25520	53565	53565		696			-0.024187035598401962
SPHGQVSRHLF	11	Unmodified	_SPHGQVSRHLF_					0	0	0			REV__ENST00000453258.6_2_10:97626149-97626437:+|nuORF	REV__ENST00000453258.6_2_10:97626149-97626437:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.22308349609375	3	422.223028	1263.64725	0.058762	2.4811E-05	0.27485	0.00011605	0.33361	0.00014086	422.2231514078592	32.313	0.94044	32.367	32.045	32.985	0.054371					103	33	4	0	0	0	0.37585	1	6119	6119		8.2864	0	1	1433000	+		44076	21139	25520	25521	53566	53566					0.025975422346846244
SPHGRRQHL	9	Unmodified	_SPHGRRQHL_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2969970703125	2	544.29703	1086.57951	0.11471	6.2435E-05	-0.12554	-6.8333E-05	-0.010837	-5.8986E-06	544.2969101816537	12.381	0.36734	12.381	12.273	12.641	0					15	11	2	0	0	0	0.20881	1	110	110		27.629	15.989	1	368320			44077	3321	25521	25522	53567	53567					0.03968137094557278
SPHGRRQHL	9	Unmodified	_SPHGRRQHL_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.29703	1086.57951	0.30484	0.00016592	-0.28771	-0.0001566	0.01713	9.3239E-06	544.2968691971075	12.367	0.46799	12.271	12.178	12.646	-0.096607	-0.055005	-5.6185E-05	NaN	27.629	24	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402170			44078	3321	25521	25522							0.03968137094557278
SPHGTFLGF	9	Unmodified	_SPHGTFLGF_					0	0	0		nc|ENSG00000161955|O75888-5|TNFSF13;nc|ENSG00000161955|O75888-4|TNFSF13;nc|ENSG00000161955|O75888-2|TNFSF13;ENSG00000161955|ENST00000338784|TNFSF13;nc|ENSG00000239697|O43508-2|TNFSF12	nc|ENSG00000161955|O75888-5|TNFSF13	nc|ENSG00000161955|O75888-5|TNFSF13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7400817871094	2	481.74016	961.465767	0.91742	0.00044196	-0.77467	-0.00037319	0.14275	6.8768E-05	481.7397182576919	56.061	0.55659	56.061	55.787	56.344	0					27	19	2	0	0	0	0.072844	1	13438	13438		44.407	6.433	1	865420			44079	5537	25522	25523	53568	53568					-0.01650770791047762
SPHHALGL	8	Unmodified	_SPHHALGL_					0	0	0		nc|ENSG00000165655|Q96F45-3|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;ENSG00000165655|ENST00000372524|ZNF503	nc|ENSG00000165655|Q96F45-3|ZNF503	nc|ENSG00000165655|Q96F45-3|ZNF503	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.215576171875	2	416.22722	830.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.468	1	22.38	21.88	22.88	-0.087608								0	0	0	0.34752	1	3157	3157		15.768	0	1				44080	5986	25523	25524	53569	53569					0.017883797573290394
SPHHTTPSF	9	Unmodified	_SPHHTTPSF_					0	0	0			REV__ENST00000368184.7_2_1:157648303-157648486:-|nuORF	REV__ENST00000368184.7_2_1:157648303-157648486:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2406005859375	2	505.738148	1009.46174	0.079134	4.0021E-05	1.4949	0.00075605	1.5741	0.00079607	506.24069215691327	22.879	0.58488	22.791	22.461	23.046	-0.087608					34	20	2	0	0	0	0.27532	1	3252	3252		12.532	0	1	123930	+		44081	20330	25524	25525	53570	53570					-0.042608602847622024
SPHHTTPSF	9	Unmodified	_SPHHTTPSF_					0	0	0			REV__ENST00000368184.7_2_1:157648303-157648486:-|nuORF	REV__ENST00000368184.7_2_1:157648303-157648486:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	505.738148	1009.46174	0.10327	5.2229E-05	1.7681	0.00089421	1.8714	0.00094644	506.2406932684345	22.705	0.69859	22.705	22.446	23.145	0	-0.050204	5.9894E-05	NaN	12.532	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130950	+		44082	20330	25524	25525							-0.042608602847622024
SPHHTTPSF	9	Unmodified	_SPHHTTPSF_					0	0	0			REV__ENST00000368184.7_2_1:157648303-157648486:-|nuORF	REV__ENST00000368184.7_2_1:157648303-157648486:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	505.738148	1009.46174	0.079134	4.0021E-05	1.4949	0.00075605	1.5741	0.00079607	506.24069215691327	22.879	0.58488	22.791	22.461	23.046	-0.087608	0.036656	-0.00021642	NaN	12.532	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123930	+		44083	20330	25524	25525							-0.042608602847622024
SPHHTTPSF	9	Unmodified	_SPHHTTPSF_					0	0	0			REV__ENST00000368184.7_2_1:157648303-157648486:-|nuORF	REV__ENST00000368184.7_2_1:157648303-157648486:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	505.738148	1009.46174	0.18472	9.3421E-05	1.7317	0.00087579	1.9164	0.00096921	506.24079596811197	22.813	0.72392	22.768	22.553	23.277	-0.044867	0.013548	2.3057E-05	NaN	12.532	37	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98947	+		44084	20330	25524	25525							-0.042608602847622024
SPHIPYKLL	9	Unmodified	_SPHIPYKLL_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7855834960938	2	534.316035	1066.61752	0.69569	0.00037172	-0.2384	-0.00012738	0.45729	0.00024433	534.3158219827619	48.383	0.50459	48.383	48.131	48.636	0					25	17	2	0	0	0	0.20167	1	11066	11066		22.736	3.2973	1	587320			44085	3157	25525	25526	53571	53571					0.08687210236666942
SPHIPYKLL	9	Unmodified	_SPHIPYKLL_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.3159790039062	2	534.316035	1066.61752	0.71523	0.00038216	-0.36666	-0.00019591	0.34857	0.00018624	534.3157246540528	48.328	0.53072	48.376	48.132	48.663	0.047523					27	19	2	0	0	0	0.17277	1	11065	11065		27.629	0.74515	1	696970			44086	3157	25525	25526	53572	53572					0.08687210236666942
SPHIPYKLL	9	Unmodified	_SPHIPYKLL_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2918701171875	2	534.316035	1066.61752	0.70101	0.00037456	-0.2015	-0.00010766	0.49951	0.0002669	534.3157574256467	48.311	0.46476	48.354	48.095	48.56	0.04332					25	17	2	0	0	0	0.18936	1	11004	11004		32.786	10.049	1	619270			44087	3157	25525	25526	53573	53573					0.08687210236666942
SPHLLKML	8	Unmodified	_SPHLLKML_					0	0	0			REV__ENSG00000150361|ENST00000377844|KLHL1	REV__ENSG00000150361|ENST00000377844|KLHL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2807922363281	2	469.778231	937.541908	0.36563	0.00017177	0.57212	0.00026877	0.93775	0.00044054	469.77853301450665	82.826	1.1476	82.805	82.224	83.371	-0.020584					109	45	4	0	0	0	0.45942	1	21711	21711		2.5775	0	1	1179100	+		44088	16494	25526	25527	53574	53574					0.07063909784733369
SPHPAIARL	9	Unmodified	_SPHPAIARL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.28265380859375	2	481.282526	960.550499	0.042843	2.0619E-05	1.6041	0.000772	1.6469	0.00079262	481.28252838779355	28.574	0.77097	28.574	28.207	28.978	0					76	26	4	0	0	0	0.23784	1	4993	4993		19.257	4.4187	1	514140			44089	8441	25527	25528	53575	53575					0.06864599745563282
SPHPAIARL	9	Unmodified	_SPHPAIARL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2825012207031	2	481.282526	960.550499	0.09323	4.487E-05	1.3838	0.00066598	1.477	0.00071085	481.28249542259744	28.557	0.84496	28.553	28.112	28.957	-0.0042572					76	29	4	0	0	0	0.23784	1	4995	4995		19.257	4.4187	1	614720			44090	8441	25527	25528	53576	53576					0.06864599745563282
SPHRYRMTVLR	11	Unmodified	_SPHRYRMTVLR_					0	0	0		ENST00000462742.1_1_21:45751724-45754149:-|nuORF;nc|ENSG00000160226|O43822-2|CFAP410;nc|ENSG00000160226|O43822-3|CFAP410;ENSG00000160226|ENST00000339818|CFAP410;nc|ENSG00000160226|O43822-4|CFAP410	ENST00000462742.1_1_21:45751724-45754149:-|nuORF	ENST00000462742.1_1_21:45751724-45754149:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7823181152344	3	472.594467	1414.76157	0.039747	1.8784E-05	0.49068	0.00023189	0.53043	0.00025068	472.59462965779466	51.965	0.3961	51.965	51.784	52.18	0					26	14	3	0	0	0	0.33236	1	12185	12185		2.4348	0	1	254110			44091	5452	25528	25529	53577	53577					0.0707810872513619
SPHTPNEKF	9	Unmodified	_SPHTPNEKF_					0	0	0		nc|ENSG00000090530|Q8IVL5-2|P3H2;ENSG00000090530|ENST00000319332|P3H2;ENST00000481465.3_1_1:43215737-43220567:-|nuORF;ENST00000460031.5_1_1:43212370-43220777:-|nuORF;nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1	nc|ENSG00000090530|Q8IVL5-2|P3H2	nc|ENSG00000090530|Q8IVL5-2|P3H2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7590942382812	2	528.759081	1055.50361	0.65633	0.00034704	-1.1257	-0.00059522	-0.46935	-0.00024818	528.7583005748041	21.06	0.59535	21.007	20.638	21.233	-0.05291					37	20	2	0	0	0	0.2869	1	2726	2726		10.8	1.4164	1	77461			44092	1381	25529	25530	53578	53578					-0.021923045962239485
SPHTRRKESL	10	Unmodified	_SPHTRRKESL_					0	0	0		ENSG00000198535|ENST00000355522|C2CD4A;ENSG00000183186|ENST00000332235|C2CD4C;ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000198535|ENST00000355522|C2CD4A;ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000198535|ENST00000355522|C2CD4A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.8320922851562	2	605.836185	1209.65782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.827	1	12.827	12.327	13.327	0								0	0	0	0.35308	1	242	242		7.1017	6.7511	1				44093	8087;8293	25530	25531	53579	53579					0.0613752488911814
SPHTRRKESL	10	Unmodified	_SPHTRRKESL_					0	0	0		ENSG00000198535|ENST00000355522|C2CD4A;ENSG00000183186|ENST00000332235|C2CD4C;ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000198535|ENST00000355522|C2CD4A;ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000198535|ENST00000355522|C2CD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2240295410156	3	404.226549	1209.65782	-0.47034	-0.00019012	-3.4564	-0.0013972	-3.9267	-0.0015873	404.22512680413325	12.815	0.63823	12.716	12.49	13.129	-0.099291					53	21	4	0	0	0	0.20023	2	254	254;258		32.616	19.002	1	300690			44094	8087;8293	25530	25531	53580;53581	53580					0.0613752488911814
SPHTRRKESL	10	Unmodified	_SPHTRRKESL_					0	0	0		ENSG00000198535|ENST00000355522|C2CD4A;ENSG00000183186|ENST00000332235|C2CD4C;ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000198535|ENST00000355522|C2CD4A;ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000198535|ENST00000355522|C2CD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2255859375	3	404.226549	1209.65782	-0.54134	-0.00021882	-0.49552	-0.0002003	-1.0369	-0.00041913	404.2268605530817	12.868	0.58193	12.8	12.52	13.102	-0.067496					33	19	3	0	0	0	0.18007	2	250	250;256		35.08	23.448	1	354100			44095	8087;8293	25530	25531	53582;53583	53582					0.0613752488911814
SPIALPPL	8	Unmodified	_SPIALPPL_					0	0	0		ENSG00000127334|ENST00000344096|DYRK2;ENST00000537632.1_1_12:68042913-68046304:+|nuORF	ENSG00000127334|ENST00000344096|DYRK2	ENSG00000127334|ENST00000344096|DYRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2522888183594	2	404.252372	806.49019	-0.018585	-7.5129E-06	0.25334	0.00010241	0.23476	9.4902E-05	404.25237471186404	72.223	1.0828	72.195	71.873	72.956	-0.027275					60	38	2	0	0	0	0.17761	2	18388	18388;18439		46.921	0	1	653020			44096	3314	25531	25532	53584;53585	53584					0.0792048936248193
SPIAMFLTI	9	Oxidation (M)	_SPIAM(Oxidation (M))FLTI_		SPIAM(1)FLTI		SPIAM(92)FLTI	0	0	1		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENST00000475542.1_1_10:121689169-121691647:+|nuORF	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.77587890625	2	504.775354	1007.53615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.624	1	83.624	83.124	84.124	0								0	0	0	0.0019996	1	21884	21884		92.491	40.223	1				44097	2138	25532	25533	53586	53586		261			0.03268766482415231
SPIAMFLTI	9	Oxidation (M)	_SPIAM(Oxidation (M))FLTI_		SPIAM(1)FLTI		SPIAM(85)FLTI	0	0	1		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENST00000475542.1_1_10:121689169-121691647:+|nuORF	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7754211425781	2	504.775354	1007.53615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.794	1	83.794	83.294	84.294	0								0	0	0	0.0067712	1	21936	21936		85.272	39.251	1				44098	2138	25532	25533	53587	53587		261			0.03268766482415231
SPIAMFLTI	9	Oxidation (M)	_SPIAM(Oxidation (M))FLTI_		SPIAM(1)FLTI		SPIAM(92)FLTI	0	0	1		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENST00000475542.1_1_10:121689169-121691647:+|nuORF	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7751770019531	2	504.775354	1007.53615	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.956	1	83.956	83.456	84.456	0								0	0	0	0.0019996	1	21986	21986		92.491	46.47	1				44099	2138	25532	25533	53588	53588		261			0.03268766482415231
SPIAMFLTI	9	Oxidation (M)	_SPIAM(Oxidation (M))FLTI_		SPIAM(1)FLTI		SPIAM(100)FLTI	0	0	1		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENST00000475542.1_1_10:121689169-121691647:+|nuORF	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7752380371094	2	504.775354	1007.53615	0.488	0.00024633	-0.39904	-0.00020142	0.088961	4.4905E-05	504.7748179362296	83.802	1.4525	83.879	83.162	84.614	0.077095					127	57	4	0	0	0	0.0028127	3	21901	21855;21901;21954		103.75	48.975	1	652060			44100	2138	25532	25533	53589;53590;53591	53590		261			0.03268766482415231
SPIAMFLTI	9	Oxidation (M)	_SPIAM(Oxidation (M))FLTI_		SPIAM(1)FLTI		SPIAM(92)FLTI	0	0	1		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENST00000475542.1_1_10:121689169-121691647:+|nuORF	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.77490234375	2	504.775354	1007.53615	0.52683	0.00026593	-0.45342	-0.00022888	0.073404	3.7053E-05	504.7748874514465	83.812	1.6216	83.795	83.031	84.652	-0.016823					146	69	4	0	0	0	0.0042343	4	21960	21869;21914;21960;22004		92.491	46.47	1	615060			44101	2138	25532	25533	53592;53593;53594;53595	53594		261			0.03268766482415231
SPIFKNFPMR	10	Unmodified	_SPIFKNFPMR_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.23187255859375	3	412.890109	1235.6485	0.34515	0.00014251	-2.8288	-0.001168	-2.4837	-0.0010255	412.8887087761102	33.942	0.43466	33.942	33.7	34.135	0					22	15	2	0	0	0	0.31597	1	6604	6604		12.175	3.1985	1	64346	+		44102	17339	25533	25534	53596	53596					0.04010040279217719
SPIHTVYP	8	Unmodified	_SPIHTVYP_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2406311035156	2	457.242535	912.470518	-0.23795	-0.0001088	-2.5201	-0.0011523	-2.7581	-0.0012611	457.24092952292625	13.357	0.75651	13.29	12.763	13.519	-0.067496					38	26	2	0	0	0	0.45169	1	396	396		5.2307	0.33366	1	59751	+		44103	18625	25534	25535	53597	53597					0.010781133517070884
SPIKVTLATL	10	Unmodified	_SPIKVTLATL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000521260.1_1_5:170818338-170818467:+|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000438918.1_1_2:204637659-204638058:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8291015625	2	521.828975	1041.6434	0.49615	0.00025891	0.13593	7.093E-05	0.63208	0.00032984	521.8289967365093	58.19	0.69169	58.19	57.904	58.595	0					64	23	4	0	0	0	8.3317E-09	3	14064	14064;14106;14153		169.92	105.96	1	2605000			44104	7226	25535	25536	53598;53599;53600	53598					0.12424059688282796
SPIKVTLATL	10	Unmodified	_SPIKVTLATL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000521260.1_1_5:170818338-170818467:+|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000438918.1_1_2:204637659-204638058:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.8292846679688	2	521.828975	1041.6434	0.43164	0.00022524	0.1232	6.4289E-05	0.55484	0.00028953	521.8289799484353	58.032	0.76888	58.117	57.812	58.581	0.085617					74	27	4	0	0	0	8.3317E-09	3	14061	14013;14061;14110		169.92	108.32	1	2712600			44105	7226	25535	25536	53601;53602;53603	53602					0.12424059688282796
SPIKVTLATL	10	Unmodified	_SPIKVTLATL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000521260.1_1_5:170818338-170818467:+|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000438918.1_1_2:204637659-204638058:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.8292236328125	2	521.828975	1041.6434	0.66639	0.00034774	-0.075296	-3.9292E-05	0.59109	0.00030845	521.8288605623351	58.202	0.83551	58.185	57.874	58.71	-0.0172					74	30	4	0	0	0	8.3317E-09	3	14093	14044;14093;14142		169.92	108.32	1	2491900			44106	7226	25535	25536	53604;53605;53606	53605					0.12424059688282796
SPIPFWPTF	9	Unmodified	_SPIPFWPTF_					0	0	0		ENST00000560780.1_2_15:44964301-44966556:-|nuORF;ENSG00000229474|ENST00000682850|PATL2	ENST00000560780.1_2_15:44964301-44966556:-|nuORF	ENST00000560780.1_2_15:44964301-44966556:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2922973632812	2	546.28166	1090.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.688	1	62.688	62.188	63.188	0								0	0	0	0.20639	1	15481	15481		20.454	1.1966	1				44107	8462	25536	25537	53607	53607					0.007115459369288146
SPIPFWPTF	9	Unmodified	_SPIPFWPTF_					0	0	0		ENST00000560780.1_2_15:44964301-44966556:-|nuORF;ENSG00000229474|ENST00000682850|PATL2	ENST00000560780.1_2_15:44964301-44966556:-|nuORF	ENST00000560780.1_2_15:44964301-44966556:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.292724609375	2	546.28166	1090.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.234	1	63.234	62.734	63.734	0								0	0	0	0.18374	1	15649	15649		26.884	7.6267	1				44108	8462	25536	25537	53608	53608					0.007115459369288146
SPIPSIPEI	9	Unmodified	_SPIPSIPEI_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.77093505859375	2	476.771126	951.527698	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.793	1	73.793	73.293	74.293	0								0	0	0	0.16039	1	18878	18878		32.305	0	1				44109	6021	25537	25538	53609	53609					0.04999535837418989
SPIPSIPEI	9	Unmodified	_SPIPSIPEI_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.77117919921875	2	476.771126	951.527698	0.15312	7.3002E-05	-1.1961	-0.00057029	-1.043	-0.00049728	476.7705610467797	73.723	0.48292	73.775	73.524	74.007	0.052368					22	16	2	0	0	0	0.14076	1	18856	18856		32.305	0	1	275350			44110	6021	25537	25538	53610	53610					0.04999535837418989
SPIPSIPEI	9	Unmodified	_SPIPSIPEI_					0	0	0		nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.7708740234375	2	476.771126	951.527698	0.16817	8.0178E-05	-2.3473	-0.0011191	-2.1792	-0.001039	476.7702444684887	73.842	0.60824	73.811	73.424	74.032	-0.030655					38	21	2	0	0	0	0.088391	2	18875	18875;18940		39.957	0	1	404720			44111	6021	25537	25538	53611;53612	53611					0.04999535837418989
SPIRSKLSSAL	11	Unmodified	_SPIRSKLSSAL_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2999267578125	2	579.845687	1157.67682	-0.099426	-5.7652E-05	0.83899	0.00048648	0.73956	0.00042883	579.846135662699	34.36	0.33793	34.43	34.242	34.58	0.069881					19	11	2	0	0	0	0.33134	1	6766	6766		6.1918	2.2475	1	84548			44112	1535	25538	25539	53613	53613					0.10429061460195044
SPISLTPRLQR	11	Unmodified	_SPISLTPRLQR_					0	0	0		ENST00000529211.1_1_11:8640457-8640535:-|nuORF	ENST00000529211.1_1_11:8640457-8640535:-|nuORF	ENST00000529211.1_1_11:8640457-8640535:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3778686523438	2	634.377686	1266.74082	0.46085	0.00029236	-0.68289	-0.00043321	-0.22203	-0.00014085	634.3780412803046	105.8	0.50414	105.8	105.47	105.98	0.0031738					124	71	2	0	0	0	0.46277	1	28065	28065		2.9952	0.26005	1	170440			44113	11596	25539	25540	53614	53614					0.11811841617122809
SPISLTPRLQR	11	Unmodified	_SPISLTPRLQR_					0	0	0		ENST00000529211.1_1_11:8640457-8640535:-|nuORF	ENST00000529211.1_1_11:8640457-8640535:-|nuORF	ENST00000529211.1_1_11:8640457-8640535:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3782958984375	2	634.377686	1266.74082	0.45834	0.00029076	-0.078431	-4.9755E-05	0.37991	0.00024101	634.3783013347212	106.04	0.26144	106.04	105.94	106.2	0.0031738					61	38	2	0	0	0	0.46475	1	28074	28074		2.7352	0.23671	1	157480			44114	11596	25539	25540	53615	53615					0.11811841617122809
SPISSLHNRSL	11	Unmodified	_SPISSLHNRSL_					0	0	0			REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.2243347167969	3	404.222805	1209.64658	-0.44032	-0.00017799	3.196	0.0012919	2.7557	0.0011139	404.2247037623399	12.717	0.42254	12.717	12.555	12.977	0					38	14	4	0	0	0	0.20949	2	238	238;245		30.354	16.74	1	360940	+		44115	15313	25540	25541	53616;53617	53616					0.050147027950060874
SPIVELLKMVH	11	Unmodified	_SPIVELLKMVH_					0	0	0			REV__nc|ENSG00000113790|Q08426-2|EHHADH	REV__nc|ENSG00000113790|Q08426-2|EHHADH	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3690185546875	2	633.367941	1264.72133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.96	1	118.96	118.46	119.46	0								0	0	0	0.38203	1	30713	30713		0.30703	0	1		+		44116	14819	25541	25542	53618	53618					0.09955749282016768
SPIVTSGLIM	10	Oxidation (M)	_SPIVTSGLIM(Oxidation (M))_		SPIVTSGLIM(1)		SPIVTSGLIM(60)	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2837524414062	2	517.283543	1032.55253	0.24583	0.00012717	-0.085547	-4.4252E-05	0.16029	8.2914E-05	517.2835450430159	59.349	0.59552	59.349	59.107	59.702	0					26	20	2	0	0	0	0.045157	2	14462	14462;14492		60.074	33.19	1	1225500			44117	732	25542	25543	53619;53620	53619		95			0.03755847648517374
SPIVTSGLIM	10	Oxidation (M)	_SPIVTSGLIM(Oxidation (M))_		SPIVTSGLIM(1)		SPIVTSGLIM(76)	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.283447265625	2	517.283543	1032.55253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.317	1	59.408	58.908	59.908	0.091301								0	0	0	0.0069724	1	14430	14430		75.761	43.455	1				44118	732	25542	25543	53621	53621		95			0.03755847648517374
SPIYVIFFFF	10	Unmodified	_SPIYVIFFFF_					0	0	0		ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.9299621582031	3	427.230237	1278.66888	0.23883	0.00010203	-0.42743	-0.00018261	-0.18861	-8.0578E-05	427.2299051567081	32.384	0.10656	32.439	32.344	32.45	0.055309					5	3	2	0	0	0	0.32051	1	6154	6154		0.13989	0	1	34045			44119	3305	25543	25544	53622	53622					0.040695342106801036
SPKAKKIYNEF	11	Unmodified	_SPKAKKIYNEF_					0	0	0		nc|ENSG00000117152|P49798-3|RGS4;ENST00000491263.1_1_1:163042508-163043577:+|nuORF;nc|ENSG00000117152|P49798-5|RGS4;nc|ENSG00000117152|P49798-2|RGS4;ENSG00000117152|ENST00000367909|RGS4	nc|ENSG00000117152|P49798-3|RGS4	nc|ENSG00000117152|P49798-3|RGS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7741394042969	3	442.246839	1323.71869	0.5443	0.00024072	-0.48132	-0.00021286	0.062977	2.7851E-05	442.24667254145095	50.444	0.73068	50.444	50.166	50.896	0					69	26	4	0	0	0	0.33122	1	11779	11779		4.4062	0	1	1506900			44120	12672	25544	25545	53623	53623					0.06977617148686477
SPKAQERQS	9	Unmodified	_SPKAQERQS_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B;nc|ENSG00000266714|Q96JP2-2|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.7667846679688	2	515.767437	1029.52032	0.059349	3.0611E-05	-0.70454	-0.00036338	-0.64519	-0.00033277	515.767089687264	15.983	0.31312	15.92	15.781	16.094	-0.062534					19	10	2	0	0	0	0.33508	1	1209	1209		3.5965	0.60125	1	42892			44121	8679	25545	25546	53624	53624					0.0067419628969673795
SPKATGVFTTL	11	Unmodified	_SPKATGVFTTL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3131713867188	2	561.313689	1120.61282	0.35331	0.00019832	-0.87748	-0.00049254	-0.52417	-0.00029423	561.313110072514	49.052	1.2129	49.097	48.768	49.981	0.044891					130	44	4	0	0	0	4.5956E-06	2	11288	11236;11288		129.39	70.02	1	8691700			44122	2642	25546	25547	53625;53626	53626					0.05734281303239186
SPKATGVFTTL	11	Unmodified	_SPKATGVFTTL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3131713867188	2	561.313689	1120.61282	0.11456	6.4303E-05	-0.68094	-0.00038222	-0.56638	-0.00031792	561.313201324568	48.986	1.3965	49.018	48.71	50.107	0.032043					148	50	4	0	0	0	1.4992E-05	2	11257	11205;11257		119.6	65.77	1	8779200			44123	2642	25546	25547	53627;53628	53628					0.05734281303239186
SPKATGVFTTL	11	Unmodified	_SPKATGVFTTL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	561.313689	1120.61282	0.39402	0.00022117	-0.97434	-0.00054691	-0.58033	-0.00032574	561.3130388243926	49.006	1.0975	49.006	48.721	49.819	0	-0.034402	-0.00014614	NaN	129.39	122	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8973100			44124	2642	25546	25547							0.05734281303239186
SPKGDVDPF	9	Unmodified	_SPKGDVDPF_					0	0	0		chr11:117822717-117823135|429|63.82|0.0|22.61|-|2|FXYD6-FXYD2,None|2;chr11:117822717-117823216|260|85.52|0.0|23.03|-|2|FXYD6-FXYD2,None|3;chr11:117822717-117824815|324|69.55|0.0|22.73|-|2|FXYD6-FXYD2,None|1;chr11:117822717-117824642|157|124.2|0.0|23.57|-|2|FXYD6-FXYD2,None|1;chr11:117822717-117823011|283|114.67|0.0|23.45|-|2|FXYD6-FXYD2,None|1;chr11:117822717-117822927|459|67.85|0.0|22.69|-|2|FXYD6-FXYD2,None|1;nc|ENSG00000137731|P54710-2|FXYD2;ENSG00000137731|ENST00000292079|FXYD2;ENST00000534383.5_1_11:117691389-117694973:-|nuORF;ENST00000317594.6_1_11:117693022-117695420:-|nuORF	chr11:117822717-117823135|429|63.82|0.0|22.61|-|2|FXYD6-FXYD2,None|2	chr11:117822717-117823135|429|63.82|0.0|22.61|-|2|FXYD6-FXYD2,None|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2819519042969	2	481.234907	960.455261	0.37346	0.00017972	-0.94886	-0.00045662	-0.5754	-0.0002769	481.2348724129036	36.564	0.4058	36.648	36.432	36.837	0.084198					27	14	3	0	0	0	0.22061	1	7440	7440		24.021	3.1494	1	186520			44125	126	25547	25548	53629	53629					-0.02654798236130773
SPKGDVDPF	9	Unmodified	_SPKGDVDPF_					0	0	0		chr11:117822717-117823135|429|63.82|0.0|22.61|-|2|FXYD6-FXYD2,None|2;chr11:117822717-117823216|260|85.52|0.0|23.03|-|2|FXYD6-FXYD2,None|3;chr11:117822717-117824815|324|69.55|0.0|22.73|-|2|FXYD6-FXYD2,None|1;chr11:117822717-117824642|157|124.2|0.0|23.57|-|2|FXYD6-FXYD2,None|1;chr11:117822717-117823011|283|114.67|0.0|23.45|-|2|FXYD6-FXYD2,None|1;chr11:117822717-117822927|459|67.85|0.0|22.69|-|2|FXYD6-FXYD2,None|1;nc|ENSG00000137731|P54710-2|FXYD2;ENSG00000137731|ENST00000292079|FXYD2;ENST00000534383.5_1_11:117691389-117694973:-|nuORF;ENST00000317594.6_1_11:117693022-117695420:-|nuORF	chr11:117822717-117823135|429|63.82|0.0|22.61|-|2|FXYD6-FXYD2,None|2	chr11:117822717-117823135|429|63.82|0.0|22.61|-|2|FXYD6-FXYD2,None|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2819519042969	2	481.234907	960.455261	0.72175	0.00034733	-0.79395	-0.00038208	-0.0722	-3.4745E-05	481.23490743159874	36.558	0.44048	36.651	36.458	36.898	0.093014					38	15	3	0	0	0	0.24289	1	7433	7433		13.042	0	1	139540			44126	126	25547	25548	53630	53630					-0.02654798236130773
SPKGHLTRL	9	Unmodified	_SPKGHLTRL_					0	0	0		ENST00000475280.1_1_16:128308-129705:+|nuORF;nc|ENSG00000103152|P29372-5|MPG;nc|ENSG00000103152|P29372-2|MPG;ENSG00000103152|ENST00000356432|MPG;nc|ENSG00000103152|P29372|MPG	ENST00000475280.1_1_16:128308-129705:+|nuORF	ENST00000475280.1_1_16:128308-129705:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.80108642578125	2	504.801083	1007.58761	0.18372	9.2741E-05	0.28921	0.00014599	0.47292	0.00023873	504.8011916202813	16.306	0.4267	16.306	16.035	16.461	0					41	14	4	0	0	0	0.068498	1	1285	1285		46.022	17.528	1	147120			44127	1812	25548	25549	53631	53631					0.0841227129130857
SPKGHLTRL	9	Unmodified	_SPKGHLTRL_					0	0	0		ENST00000475280.1_1_16:128308-129705:+|nuORF;nc|ENSG00000103152|P29372-5|MPG;nc|ENSG00000103152|P29372-2|MPG;ENSG00000103152|ENST00000356432|MPG;nc|ENSG00000103152|P29372|MPG	ENST00000475280.1_1_16:128308-129705:+|nuORF	ENST00000475280.1_1_16:128308-129705:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.8013610839844	2	504.801083	1007.58761	0.10199	5.1482E-05	0.5177	0.00026134	0.61969	0.00031282	504.80127169549655	16.412	0.40161	16.298	16.075	16.476	-0.11434					35	13	3	0	0	0	0.23612	1	1353	1353		18.373	6.1324	1	156800			44128	1812	25548	25549	53632	53632					0.0841227129130857
SPKGHLTRL	9	Unmodified	_SPKGHLTRL_					0	0	0		ENST00000475280.1_1_16:128308-129705:+|nuORF;nc|ENSG00000103152|P29372-5|MPG;nc|ENSG00000103152|P29372-2|MPG;ENSG00000103152|ENST00000356432|MPG;nc|ENSG00000103152|P29372|MPG	ENST00000475280.1_1_16:128308-129705:+|nuORF	ENST00000475280.1_1_16:128308-129705:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.80133056640625	2	504.801083	1007.58761	0.23972	0.00012101	0.2874	0.00014508	0.52711	0.00026609	504.8011399342071	16.334	0.46687	16.271	15.975	16.442	-0.062534					35	15	3	0	0	0	0.13671	1	1310	1310		32.898	17.649	1	178480			44129	1812	25548	25549	53633	53633					0.0841227129130857
SPKGKFSLF	9	Unmodified	_SPKGKFSLF_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;ENST00000525875.1_1_11:62201326-62284770:-|nuORF	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2589111328125	2	505.78711	1009.55967	0.17677	8.9407E-05	0.60645	0.00030673	0.78322	0.00039614	505.78681470000487	42.022	0.37534	42.022	41.875	42.251	0					31	12	4	0	0	0	0.16853	1	9143	9143		31.268	8.1199	1	854650			44130	3189	25549	25550	53634	53634					0.05526948311239721
SPKIPGIDL	9	Unmodified	_SPKIPGIDL_					0	0	0		ENSG00000138641|ENST00000402738|HERC3;ENST00000470815.1_1_4:89579601-89591046:+|nuORF	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.27899169921875	2	470.279118	938.543683	0.19118	8.9908E-05	-0.57907	-0.00027233	-0.38789	-0.00018242	470.2788769057083	57.063	0.72321	57.063	56.772	57.495	0					59	26	3	0	0	0	0.0091837	2	13748	13748;13792		80.676	42.5	1	677860			44131	4171	25550	25551	53635;53636	53635					0.07195242074340058
SPKIPGIDL	9	Unmodified	_SPKIPGIDL_					0	0	0		ENSG00000138641|ENST00000402738|HERC3;ENST00000470815.1_1_4:89579601-89591046:+|nuORF	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2788391113281	2	470.279118	938.543683	0.1537	7.2281E-05	-0.61174	-0.00028769	-0.45805	-0.00021541	470.27887100320555	56.927	0.69276	57.006	56.704	57.397	0.078671					55	25	3	0	0	0	0.013404	2	13694	13694;13747		74.2	43.563	1	900610			44132	4171	25550	25551	53637;53638	53637					0.07195242074340058
SPKIPGIDL	9	Unmodified	_SPKIPGIDL_					0	0	0		ENSG00000138641|ENST00000402738|HERC3;ENST00000470815.1_1_4:89579601-89591046:+|nuORF	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2790222167969	2	470.279118	938.543683	0.25239	0.00011869	-0.42888	-0.0002017	-0.17649	-8.3002E-05	470.27883761139424	57.078	0.80016	57.059	56.78	57.58	-0.019077					57	28	3	0	0	0	0.086462	1	13798	13798		40.239	14.84	1	803960			44133	4171	25550	25551	53639	53639					0.07195242074340058
SPKKPGREIEL	11	Unmodified	_SPKKPGREIEL_					0	0	0		ENST00000472011.5_1_1:235582749-235612074:+|nuORF;nc|ENSG00000285053|Q15813|TBCE;nc|ENSG00000285053|Q15813-2|TBCE	ENST00000472011.5_1_1:235582749-235612074:+|nuORF	ENST00000472011.5_1_1:235582749-235612074:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.57861328125	3	418.578588	1252.71394	-0.23341	-9.7701E-05	-0.078161	-3.2717E-05	-0.31157	-0.00013042	418.57852932274477	23.356	0.6239	23.356	23.11	23.734	0					37	21	2	0	0	0	0.34327	2	3459	3408;3459		18.34	6.3109	1	334080			44134	10885	25551	25552	53640;53641	53641					0.09768733005967078
SPKKPGREIEL	11	Unmodified	_SPKKPGREIEL_					0	0	0		ENST00000472011.5_1_1:235582749-235612074:+|nuORF;nc|ENSG00000285053|Q15813|TBCE;nc|ENSG00000285053|Q15813-2|TBCE	ENST00000472011.5_1_1:235582749-235612074:+|nuORF	ENST00000472011.5_1_1:235582749-235612074:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.578369140625	3	418.578588	1252.71394	-0.0030923	-1.2944E-06	-0.26621	-0.00011143	-0.2693	-0.00011272	418.5784253062402	23.475	0.76014	23.387	23.077	23.837	-0.087608					74	26	4	0	0	0	0.35732	1	3450	3450		16.838	6.3109	1	363750			44135	10885	25551	25552	53642	53642					0.09768733005967078
SPKKPGREIEL	11	Unmodified	_SPKKPGREIEL_					0	0	0		ENST00000472011.5_1_1:235582749-235612074:+|nuORF;nc|ENSG00000285053|Q15813|TBCE;nc|ENSG00000285053|Q15813-2|TBCE	ENST00000472011.5_1_1:235582749-235612074:+|nuORF	ENST00000472011.5_1_1:235582749-235612074:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.578369140625	3	418.578588	1252.71394	0.15257	6.3864E-05	-0.68234	-0.00028561	-0.52976	-0.00022175	418.5782850072136	23.467	0.96371	23.427	23.201	24.165	-0.040163					59	23	3	0	0	0	0.13269	1	3451	3451		37.251	21.712	1	357170			44136	10885	25551	25552	53643	53643					0.09768733005967078
SPKLPVSSL	9	Unmodified	_SPKLPVSSL_					0	0	0		ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.27874755859375	2	464.279118	926.543683	0.10722	4.978E-05	-0.68092	-0.00031614	-0.5737	-0.00026636	464.2785800223687	46.225	0.66543	46.291	45.976	46.642	0.065048					58	23	3	0	0	0	0.019446	1	10432	10432		64.927	4.8528	1	1950000			44137	2698	25552	25553	53644	53644					0.07747242074333371
SPKLPVSSL	9	Unmodified	_SPKLPVSSL_					0	0	0		ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	464.279118	926.543683	-0.26794	-0.0001244	-0.2223	-0.00010321	-0.49023	-0.0002276	464.27883434015865	46.301	0.75853	46.301	45.974	46.732	0	0.018522	0.00019915	NaN	64.927	66	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2117500			44138	2698	25552	25553							0.07747242074333371
SPKLPVSSL	9	Unmodified	_SPKLPVSSL_					0	0	0		ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	464.279118	926.543683	-0.1227	-5.6965E-05	-0.36439	-0.00016918	-0.48709	-0.00022614	464.2786658582745	46.196	0.73622	46.255	45.926	46.662	0.059837	-0.026823	6.7205E-05	NaN	64.927	62	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1999900			44139	2698	25552	25553							0.07747242074333371
SPKPPSQQL	9	Unmodified	_SPKPPSQQL_					0	0	0		nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2900390625	2	491.271824	980.529095	0.19273	9.4683E-05	0.23049	0.00011323	0.42322	0.00020792	491.2720200755635	26.116	0.67076	26.116	25.769	26.44	0					43	23	3	0	0	0	0.19208	1	4305	4305		33.445	7.1768	1	179900			44140	338	25553	25554	53645	53645					0.03805169926192775
SPKPPSQQL	9	Unmodified	_SPKPPSQQL_					0	0	0		nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.2900390625	2	491.271824	980.529095	0.16793	8.2499E-05	0.60064	0.00029508	0.76857	0.00037758	491.27208224684614	26.153	0.55744	26.114	25.813	26.37	-0.038671					48	19	3	0	0	0	0.11234	1	4308	4308		51.63	15.503	1	228770			44141	338	25553	25554	53646	53646					0.03805169926192775
SPKPPTSMF	9	Oxidation (M)	_SPKPPTSM(Oxidation (M))F_		SPKPPTSM(1)F		SPKPPTSM(110)F	0	0	1		nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;ENST00000560764.5_1_15:57511653-57526277:+|nuORF	nc|ENSG00000140262|Q99081-2|TCF12	nc|ENSG00000140262|Q99081-2|TCF12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2470397949219	2	504.24696	1006.47937	0.54504	0.00027484	0.16898	8.521E-05	0.71403	0.00036005	504.2469365688595	32.308	1.2055	32.308	31.719	32.924	0					95	42	3	0	0	0	0.0019475	3	6162	6109;6162;6210		110.67	45.44	1	757560			44142	4288	25554	25555	53647;53648;53649	53648		546			-0.023612810741155954
SPKPPTSMF	9	Oxidation (M)	_SPKPPTSM(Oxidation (M))F_		SPKPPTSM(1)F		SPKPPTSM(120)F	0	0	1		nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;ENST00000560764.5_1_15:57511653-57526277:+|nuORF	nc|ENSG00000140262|Q99081-2|TCF12	nc|ENSG00000140262|Q99081-2|TCF12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.24725341796875	2	504.24696	1006.47937	0.59671	0.00030089	0.12399	6.2521E-05	0.7207	0.00036341	504.2468785828544	32.231	1.0919	32.286	31.722	32.814	0.055309					84	38	3	0	0	0	0.0013683	3	6178	6080;6129;6178		118.07	46.146	1	954250			44143	4288	25554	25555	53650;53651;53652	53652		546			-0.023612810741155954
SPKPPTSMF	9	Oxidation (M)	_SPKPPTSM(Oxidation (M))F_		SPKPPTSM(1)F		SPKPPTSM(120)F	0	0	1		nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12;ENST00000560764.5_1_15:57511653-57526277:+|nuORF	nc|ENSG00000140262|Q99081-2|TCF12	nc|ENSG00000140262|Q99081-2|TCF12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2471618652344	2	504.24696	1006.47937	0.35811	0.00018058	0.34716	0.00017505	0.70527	0.00035563	504.2469971412999	32.301	1.0641	32.355	31.786	32.85	0.054371					88	37	3	0	0	0	0.0013683	3	6139	6089;6139;6187		118.07	46.146	1	972910			44144	4288	25554	25555	53653;53654;53655	53654		546			-0.023612810741155954
SPKPQMKK	8	Unmodified	_SPKPQMKK_					0	0	0			REV__WDR72|p.D837Mfs*7|1|0.32|ENSG00000166415|chr15:53615697-53615698|-/TTCAT|frameshift_variant	REV__WDR72|p.D837Mfs*7|1|0.32|ENSG00000166415|chr15:53615697-53615698|-/TTCAT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2650146484375	2	472.273312	942.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.393	1	91.393	90.893	91.893	0.00046539								0	0	0	0.37183	1	24257	24257		4.756	0.42677	1		+		44145	17318	25555	25556	53656	53656					0.05850721779347623
SPKRDLIAL	9	Unmodified	_SPKRDLIAL_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;nc|ENSG00000053900|Q9UJX5-2|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.811279296875	2	506.811116	1011.60768	0.42968	0.00021776	-0.47581	-0.00024115	-0.046133	-2.3381E-05	506.8108656296829	36.447	0.64418	36.53	36.331	36.975	0.082355					42	22	2	0	0	0	0.19888	1	7426	7426		32.037	13.891	1	470170			44146	681	25556	25557	53657	53657					0.10234022231270501
SPKRPPSPIKF	11	Unmodified	_SPKRPPSPIKF_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.2095642089844	3	418.583674	1252.72919	-0.24617	-0.00010304	0.28141	0.00011779	0.035236	1.4749E-05	418.58371935589236	31.481	0.52228	31.481	31.144	31.667	0					45	18	4	0	0	0	0.32912	1	5888	5888		5.5233	0	1	306750			44147	560	25557	25558	53658	53658					0.11293644593774843
SPKRPPSPIKF	11	Unmodified	_SPKRPPSPIKF_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.8753662109375	3	418.583674	1252.72919	-0.10131	-4.2408E-05	0.029552	1.237E-05	-0.071761	-3.0038E-05	418.58362677861317	31.411	0.46973	31.453	31.13	31.6	0.042366					41	16	3	0	0	0	0.32787	1	5886	5886		10.527	3.4904	1	354900			44148	560	25557	25558	53659	53659					0.11293644593774843
SPKRPPSPIKF	11	Unmodified	_SPKRPPSPIKF_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.87542724609375	3	418.583674	1252.72919	0.091025	3.8102E-05	-0.14858	-6.2192E-05	-0.057552	-2.409E-05	418.58347516157806	31.369	0.52201	31.41	31.098	31.62	0.040989					39	18	4	0	0	0	0.32369	1	5858	5858		21.241	13.296	1	347370			44149	560	25557	25558	53660	53660					0.11293644593774843
SPKTFQQIL	9	Unmodified	_SPKTFQQIL_					0	0	0		ZBTB16|p.E164Gfs*70|1|0.15|ENSG00000109906|chr11:114063791-114063810|AGGAGAGTGGGTATGCCAGT/-|frameshift_variant;ENST00000541602.5_1_11:113934022-114057819:+|nuORF;nc|ENSG00000109906|Q05516-2|ZBTB16;ENSG00000109906|ENST00000335953|ZBTB16	ZBTB16|p.E164Gfs*70|1|0.15|ENSG00000109906|chr11:114063791-114063810|AGGAGAGTGGGTATGCCAGT/-|frameshift_variant	ZBTB16|p.E164Gfs*70|1|0.15|ENSG00000109906|chr11:114063791-114063810|AGGAGAGTGGGTATGCCAGT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8170166015625	2	531.303124	1060.5917	0.48531	0.00025785	0.73013	0.00038792	1.2154	0.00064577	531.3034417210995	81.546	0.56544	81.522	81.205	81.77	-0.024048					38	24	2	0	0	0	0.15219	1	21202	21202		30.637	5.2372	1	254310			44150	2278	25558	25559	53661	53661					0.06382315994369492
SPKTFQQIL	9	Unmodified	_SPKTFQQIL_					0	0	0		ZBTB16|p.E164Gfs*70|1|0.15|ENSG00000109906|chr11:114063791-114063810|AGGAGAGTGGGTATGCCAGT/-|frameshift_variant;ENST00000541602.5_1_11:113934022-114057819:+|nuORF;nc|ENSG00000109906|Q05516-2|ZBTB16;ENSG00000109906|ENST00000335953|ZBTB16	ZBTB16|p.E164Gfs*70|1|0.15|ENSG00000109906|chr11:114063791-114063810|AGGAGAGTGGGTATGCCAGT/-|frameshift_variant	ZBTB16|p.E164Gfs*70|1|0.15|ENSG00000109906|chr11:114063791-114063810|AGGAGAGTGGGTATGCCAGT/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.303124	1060.5917	0.47228	0.00025092	0.61483	0.00032666	1.0871	0.00057758	531.3034363228119	81.468	0.53985	81.468	81.28	81.82	0	-0.029654	-0.00014744	NaN	30.637	35	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194700			44151	2278	25558	25559							0.06382315994369492
SPLDLLNR	8	Unmodified	_SPLDLLNR_					0	0	0			REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7823181152344	2	464.266542	926.51853	0.10399	4.8279E-05	0.39331	0.0001826	0.4973	0.00023088	464.266530089886	45.069	0.75946	45.069	44.771	45.53	0					49	27	4	0	0	0	0.26862	1	10015	10015		34.402	0	1	626240	+		44152	14153	25559	25560	53662	53662					0.052331872717559236
SPLDLLNR	8	Unmodified	_SPLDLLNR_					0	0	0			REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7823791503906	2	464.266542	926.51853	0.098089	4.5539E-05	0.024945	1.1581E-05	0.12303	5.7121E-05	464.26637327313335	44.864	0.8023	44.932	44.711	45.514	0.068569					46	28	3	0	0	0	0.23736	1	9954	9954		37.974	0	1	623650	+		44153	14153	25559	25560	53663	53663					0.052331872717559236
SPLFKPPPQ	9	Unmodified	_SPLFKPPPQ_					0	0	0			REV__TEKT1|p.L44Efs*5|1|0.18|ENSG00000167858|chr17:6830248-6830249|-/CTCT|frameshift_variant	REV__TEKT1|p.L44Efs*5|1|0.18|ENSG00000167858|chr17:6830248-6830249|-/CTCT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2737121582031	2	505.78711	1009.55967	0.17364	8.7824E-05	3.0713	0.0015534	3.2449	0.0016413	505.7887353621142	26.204	0.37047	26.204	26.009	26.379	0					16	12	2	0	0	0	0.25779	1	4301	4301		6.2058	0	1	60995	+		44154	17415	25560	25561	53664	53664					0.055269483112283524
SPLGLRRIL	9	Unmodified	_SPLGLRRIL_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.3085327148438	2	512.834926	1023.6553	0.044935	2.3044E-05	-0.19404	-9.9508E-05	-0.1491	-7.6464E-05	512.8346860632596	46.419	0.56426	46.419	46.168	46.732	0					52	20	3	0	0	0	0.12743	1	10476	10476		37.974	7.3375	1	2437500			44155	2733	25561	25562	53665	53665					0.14441721222135584
SPLGLRRIL	9	Unmodified	_SPLGLRRIL_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.3084716796875	2	512.834926	1023.6553	0.16218	8.3173E-05	-0.50281	-0.00025786	-0.34062	-0.00017468	512.8345941206537	46.228	0.7284	46.288	46.043	46.772	0.059837					57	26	3	0	0	0	0.12743	1	10429	10429		37.974	13.953	1	2542100			44156	2733	25561	25562	53666	53666					0.14441721222135584
SPLGLRRIL	9	Unmodified	_SPLGLRRIL_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.3086547851562	2	512.834926	1023.6553	0.091599	4.6975E-05	-0.32666	-0.00016753	-0.23507	-0.00012055	512.8346249979378	46.284	0.59587	46.349	46.096	46.692	0.065048					49	21	3	0	0	0	0.16284	1	10427	10427		37.974	7.3375	1	2463000			44157	2733	25561	25562	53667	53667					0.14441721222135584
SPLGPYIV	8	Unmodified	_SPLGPYIV_					0	0	0			REV__nc|ENSG00000116761|P32929-2|CTH	REV__nc|ENSG00000116761|P32929-2|CTH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.5818786621094	2	423.242004	844.469455	0.042027	1.7788E-05	0.51206	0.00021672	0.55409	0.00023451	423.24221546683907	89.515	0.3834	89.515	89.307	89.69	0					37	23	2	0	0	0	0.34218	1	23699	23699		5.2307	5.2307	1	97165	+		44158	14937	25562	25563	53668	53668					0.04099898982804007
SPLHPGDVL	9	Unmodified	_SPLHPGDVL_					0	0	0		MESP1|p.L243H|1|0.07|ENSG00000166823|chr15:89750223-89750223|A/T|missense_variant	MESP1|p.L243H|1|0.07|ENSG00000166823|chr15:89750223-89750223|A/T|missense_variant	MESP1|p.L243H|1|0.07|ENSG00000166823|chr15:89750223-89750223|A/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7151794433594	2	467.753267	933.491981	-0.11663	-5.4552E-05	-0.56912	-0.00026621	-0.68575	-0.00032076	467.7549003130989	18.571	0.082396	18.453	18.387	18.47	-0.11739					4	2	2	0	0	0	0.25988	1	1962	1962		3.9444	0	1	14346			44159	12540	25563	25564	53669	53669					0.022574983804247495
SPLLLARLL	9	Unmodified	_SPLLLARLL_					0	0	0		ENST00000564208.5_1_16:84212549-84215086:-|nuORF;ENST00000564774.5_1_16:84212549-84214094:-|nuORF;nc|ENSG00000103168|Q15572-5|TAF1C;nc|ENSG00000103168|Q15572-4|TAF1C;nc|ENSG00000103168|Q15572-2|TAF1C;ENSG00000103168|ENST00000566732|TAF1C;nc|ENSG00000103168|Q15572|TAF1C	ENST00000564208.5_1_16:84212549-84215086:-|nuORF	ENST00000564208.5_1_16:84212549-84215086:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7294006347656	2	498.334227	994.653902	0.46135	0.00022991	0.036435	1.8157E-05	0.49779	0.00024806	498.334185892629	71.953	1.467	72.01	71.601	73.068	0.056572					69	53	2	0	0	0	0.23784	1	18608	18608		19.257	0	1	96575			44160	11946	25564	25565	53670	53670					0.15636087133384535
SPLMHKTKK	9	Unmodified	_SPLMHKTKK_					0	0	0			REV__ENST00000452606.2_1_3:12880846-12881736:-|nuORF	REV__ENST00000452606.2_1_3:12880846-12881736:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.2933959960938	2	535.312969	1068.61138	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.46	1	34.535	34.035	35.035	0.075306								0	0	0	0.2489	1	6798	6798		6.7232	0.51738	1		+		44161	16254	25565	25566	53671	53671					0.07982368733473777
SPLNSFLKFLF	11	Unmodified	_SPLNSFLKFLF_					0	0	0		Harlequin-int_dup373|chr10:84170978-84171612:-|2.1942972251223907|0.2294773950638092|3.26|500.0|37|3|anti-sense	Harlequin-int_dup373|chr10:84170978-84171612:-|2.1942972251223907|0.2294773950638092|3.26|500.0|37|3|anti-sense	Harlequin-int_dup373|chr10:84170978-84171612:-|2.1942972251223907|0.2294773950638092|3.26|500.0|37|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.77008056640625	3	438.24818	1311.72271	0.22596	9.9027E-05	0.7765	0.0003403	1.0025	0.00043933	438.24954939833543	29.156	0.56949	29.156	28.952	29.521	0					41	20	3	0	0	0	0.32909	1	5175	5175		7.4771	0	1	134540			44162	12372	25566	25567	53672	53672					0.07931706642420977
SPLPGRTPAI	10	Unmodified	_SPLPGRTPAI_					0	0	0		ENST00000366676.5_1_1:229745890-229745941:-|nuORF	ENST00000366676.5_1_1:229745890-229745941:-|nuORF	ENST00000366676.5_1_1:229745890-229745941:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.26708984375	2	504.795466	1007.57638	0.37571	0.00018966	0.38794	0.00019583	0.76366	0.00038549	504.7956164654044	31.841	0.23162	31.884	31.709	31.941	0.042364					12	7	2	0	0	0	0.31581	1	5995	5995		11.495	2.7493	1	263140			44163	9710	25567	25568	53673	53673					0.07289449197162412
SPLPHGPPN	9	Unmodified	_SPLPHGPPN_					0	0	0		nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	nc|ENSG00000153317|Q9ULH1-2|ASAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.75445556640625	2	458.237784	914.461016	0.016476	7.5497E-06	3.7538	0.0017201	3.7703	0.0017277	458.2390143611378	59.22	0.24324	59.22	59.024	59.267	0					9	8	2	0	0	0	0.1659	1	14362	14362		36.044	1.9418	1	64363			44164	5074	25568	25569	53674	53674					0.00036345066178000707
SPLQLDQWMW	10	Unmodified	_SPLQLDQWMW_					0	0	0		nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000157087|ENST00000360273|ATP2B2	nc|ENSG00000157087|Q01814-4|ATP2B2	nc|ENSG00000157087|Q01814-4|ATP2B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.77239990234375	3	435.209508	1302.60669	-0.19356	-8.4241E-05	1.8726	0.00081499	1.6791	0.00073075	435.21148277192657	18.106	0.599	17.989	17.726	18.325	-0.11739					54	20	4	0	0	0	0.31994	1	1838	1838		3.0723	2.2957	1	304550			44165	5278	25569	25570	53675	53675					-0.0325056019994463
SPLRRCEF	8	Unmodified	_SPLRRCEF_					0	0	0		nc|ENSG00000184368|Q96T17-5|MAP7D2;nc|ENSG00000184368|Q96T17-4|MAP7D2;nc|ENSG00000184368|Q96T17|MAP7D2;ENSG00000184368|ENST00000379643|MAP7D2	nc|ENSG00000184368|Q96T17-5|MAP7D2	nc|ENSG00000184368|Q96T17-5|MAP7D2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7553405761719	2	504.258194	1006.50183	0.21054	0.00010616	-1.9253	-0.00097087	-1.7148	-0.0008647	504.25741983519606	26.469	1.1368	26.469	26.009	27.146	0					62	39	3	0	0	0	0.34185	1	4548	4548		5.7604	0.52976	1	271940			44166	7448	25570	25571	53676	53676					-0.001156368858460155
SPLRRVAMAG	10	Unmodified	_SPLRRVAMAG_					0	0	0			REV__ENST00000233154.8_1_2:106509994-106510258:+|nuORF	REV__ENST00000233154.8_1_2:106509994-106510258:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3040771484375	2	529.300393	1056.58623	0.36604	0.00019374	-2.6742	-0.0014155	-2.3082	-0.0012217	529.3001218561121	24.067	0.90643	23.994	23.563	24.47	-0.072559					84	30	5	0	0	0	0.34795	1	3567	3567		13.042	0.80181	1	299540	+		44167	19470	25571	25572	53677	53677					0.0602031393091238
SPLRTFDIL	9	Unmodified	_SPLRTFDIL_					0	0	0			REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8169555664062	2	531.303124	1060.5917	0.48531	0.00025785	0.73013	0.00038792	1.2154	0.00064577	531.3034417210995	81.546	0.56544	81.522	81.205	81.77	-0.024048					38	24	2	0	0	0	0.19747	1	21245	21245		24.021	2.2739	1	254310	+		44168	15829	25572	25573	53678	53678					0.06382315994369492
SPLSGVRIQ	9	Unmodified	_SPLSGVRIQ_					0	0	0		ENST00000549787.5_1_12:56995586-56995853:-|nuORF	ENST00000549787.5_1_12:56995586-56995853:-|nuORF	ENST00000549787.5_1_12:56995586-56995853:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.29022216796875	2	478.779816	955.545079	0.46378	0.00022205	-0.29825	-0.0001428	0.16553	7.9251E-05	478.7796029976887	45.46	0.65352	45.52	45.166	45.819	0.059834					30	22	2	0	0	0	0.16283	1	10206	10206		29.082	6.4235	1	258830			44169	11789	25573	25574	53679	53679					0.0655287616308442
SPLTTAGPAP	10	Unmodified	_SPLTTAGPAP_					0	0	0			REV__ENST00000253063.3_1_1:28598287-28598828:+|nuORF	REV__ENST00000253063.3_1_1:28598287-28598828:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2440490722656	2	456.245275	910.475997	0.099805	4.5536E-05	1.2328	0.00056247	1.3326	0.000608	456.24376731721577	21.745	1.0228	21.745	21.199	22.222	0					63	36	3	0	0	0	0.38233	1	2967	2967		6.7232	0	1	143770	+		44170	19535	25574	25575	53680	53680					0.017177921435290955
SPLVQHLRAR	10	Unmodified	_SPLVQHLRAR_					0	0	0			REV__ENST00000416650.5_1_7:77313641-77325505:-|nuORF	REV__ENST00000416650.5_1_7:77313641-77325505:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8511962890625	2	588.851638	1175.68872	0.35164	0.00020706	-0.50854	-0.00029945	-0.15689	-9.2387E-05	588.8510498348444	91.77	0.56885	91.77	91.527	92.096	0					54	37	2	0	0	0	0.39935	1	24352	24352		3.5965	0.31518	1	133540	+		44171	20821	25575	25576	53681	53681					0.10790722994011048
SPMDTFLLI	9	Oxidation (M)	_SPM(Oxidation (M))DTFLLI_		SPM(1)DTFLLI		SPM(93)DTFLLI	0	0	1		nc|ENSG00000186818|Q8NHJ6-2|LILRB4;nc|ENSG00000186818|Q8NHJ6|LILRB4;ENSG00000186818|ENST00000695418|LILRB4;nc|ENSG00000186818|Q8NHJ6-3|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7704467773438	2	526.770268	1051.52598	0.58324	0.00030723	-0.1717	-9.0444E-05	0.41154	0.00021679	526.7701708575281	82.267	0.61839	82.267	81.844	82.462	0					72	22	4	0	0	0	0.0041925	3	21465	21410;21465;21512		92.822	56.778	1	10467000			44172	7646	25576	25577	53682;53683;53684	53683		842			0.0022815875715878065
SPMDTFLLI	9	Oxidation (M)	_SPM(Oxidation (M))DTFLLI_		SPM(1)DTFLLI		SPM(82)DTFLLI	0	0	1		nc|ENSG00000186818|Q8NHJ6-2|LILRB4;nc|ENSG00000186818|Q8NHJ6|LILRB4;ENSG00000186818|ENST00000695418|LILRB4;nc|ENSG00000186818|Q8NHJ6-3|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7708129882812	2	526.770268	1051.52598	0.67296	0.00035449	-0.48872	-0.00025745	0.18423	9.7048E-05	526.770158044549	82.69	1.3836	82.69	82.41	83.794	0					159	51	5	0	0	0	0.0085732	4	21603	21557;21603;21654;21703		81.613	43.462	1	13080000			44173	7646	25576	25577	53685;53686;53687;53688	53686		842			0.0022815875715878065
SPMDTFLLI	9	Oxidation (M)	_SPM(Oxidation (M))DTFLLI_		SPM(1)DTFLLI		SPM(100)DTFLLI	0	0	1		nc|ENSG00000186818|Q8NHJ6-2|LILRB4;nc|ENSG00000186818|Q8NHJ6|LILRB4;ENSG00000186818|ENST00000695418|LILRB4;nc|ENSG00000186818|Q8NHJ6-3|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7703247070312	2	526.770268	1051.52598	0.37392	0.00019697	0.016499	8.6914E-06	0.39042	0.00020566	526.7702650618297	82.178	0.54949	82.247	81.898	82.448	0.068993					83	23	4	0	0	0	0.00268	3	21410	21361;21410;21453		104.8	68.755	1	11230000			44174	7646	25576	25577	53689;53690;53691	53690		842			0.0022815875715878065
SPMDTFLLI	9	Oxidation (M)	_SPM(Oxidation (M))DTFLLI_		SPM(1)DTFLLI		SPM(82)DTFLLI	0	0	1		nc|ENSG00000186818|Q8NHJ6-2|LILRB4;nc|ENSG00000186818|Q8NHJ6|LILRB4;ENSG00000186818|ENST00000695418|LILRB4;nc|ENSG00000186818|Q8NHJ6-3|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7706909179688	2	526.770268	1051.52598	0.52309	0.00027555	-0.28936	-0.00015242	0.23373	0.00012312	526.770253516071	82.612	1.33	82.685	82.428	83.758	0.073097					154	51	4	0	0	0	0.0085732	4	21544	21497;21544;21591;21637		81.613	38.379	1	13217000			44175	7646	25576	25577	53692;53693;53694;53695	53693		842			0.0022815875715878065
SPMDTFLLI	9	Oxidation (M)	_SPM(Oxidation (M))DTFLLI_		SPM(1)DTFLLI		SPM(93)DTFLLI	0	0	1		nc|ENSG00000186818|Q8NHJ6-2|LILRB4;nc|ENSG00000186818|Q8NHJ6|LILRB4;ENSG00000186818|ENST00000695418|LILRB4;nc|ENSG00000186818|Q8NHJ6-3|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.770263671875	2	526.770268	1051.52598	0.58314	0.00030718	-0.1742	-9.1763E-05	0.40894	0.00021542	526.770146968888	82.296	0.70077	82.276	81.774	82.475	-0.020584					103	27	5	0	0	0	0.0041925	3	21430	21384;21430;21480		92.822	54.671	1	11582000			44176	7646	25576	25577	53696;53697;53698	53697		842			0.0022815875715878065
SPMDTFLLI	9	Oxidation (M)	_SPM(Oxidation (M))DTFLLI_		SPM(1)DTFLLI		SPM(82)DTFLLI	0	0	1		nc|ENSG00000186818|Q8NHJ6-2|LILRB4;nc|ENSG00000186818|Q8NHJ6|LILRB4;ENSG00000186818|ENST00000695418|LILRB4;nc|ENSG00000186818|Q8NHJ6-3|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	nc|ENSG00000186818|Q8NHJ6-2|LILRB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7704467773438	2	526.770268	1051.52598	0.6377	0.00033592	-0.37301	-0.00019649	0.26469	0.00013943	526.7701821821624	82.73	1.3337	82.709	82.45	83.784	-0.020584					178	54	5	0	0	0	0.0085732	3	21617	21526;21571;21617		81.613	45.569	1	13012000			44177	7646	25576	25577	53699;53700;53701	53701		842			0.0022815875715878065
SPMKFKPMKF	10	Unmodified	_SPMKFKPMKF_					0	0	0			REV__AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant	REV__AHNAK2|p.S4999Lfs*33|1|0.15|ENSG00000185567|chr14:104940456-104940456|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.90838623046875	3	414.224212	1239.65081	-0.082627	-3.4226E-05	-3.1124	-0.0012892	-3.195	-0.0013235	414.22273139351563	24.408	0.51408	24.408	24.248	24.762	0					31	16	2	0	0	0	0.31889	1	3762	3762		3.3196	0.24738	1	53978	+		44178	13093	25577	25578	53702	53702					0.040567526926906794
SPNESLAVL	9	Unmodified	_SPNESLAVL_					0	0	0			REV__ENST00000595199.1_1_18:43703285-43705790:+|nuORF	REV__ENST00000595199.1_1_18:43703285-43705790:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.77740478515625	2	465.250557	928.486562	0.24317	0.00011313	-1.8647	-0.00086755	-1.6215	-0.00075441	465.249585162727	74.901	0.36259	74.901	74.765	75.128	0					22	12	2	0	0	0	0.22596	1	19239	19239		21.747	6.9084	1	244220	+		44179	22591	25578	25579	53703	53703					0.01945774797957256
SPNESLAVL	9	Unmodified	_SPNESLAVL_					0	0	0			REV__ENST00000595199.1_1_18:43703285-43705790:+|nuORF	REV__ENST00000595199.1_1_18:43703285-43705790:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7607727050781	2	465.250557	928.486562	0.026323	1.2247E-05	-1.3779	-0.00064106	-1.3516	-0.00062881	465.24975764945617	74.872	0.39983	74.925	74.732	75.131	0.052361					23	14	2	0	0	0	0.21303	2	19206	19206;19254		21.747	5.8995	1	210490	+		44180	22591	25578	25579	53704;53705	53704					0.01945774797957256
SPNESLAVL	9	Unmodified	_SPNESLAVL_					0	0	0			REV__ENST00000595199.1_1_18:43703285-43705790:+|nuORF	REV__ENST00000595199.1_1_18:43703285-43705790:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7775573730469	2	465.250557	928.486562	0.026323	1.2247E-05	-1.3779	-0.00064106	-1.3516	-0.00062881	465.24975764945617	74.872	0.39983	74.925	74.732	75.131	0.052361					23	14	2	0	0	0	0.22596	1	19202	19202		21.747	5.8995	1	210490	+		44181	22591	25578	25579	53706	53706					0.01945774797957256
SPNGTIRNIL	10	Unmodified	_SPNGTIRNIL_					0	0	0		nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2;ENST00000462386.5_1_2:209112975-209118617:-|nuORF;ENSG00000138413|ENST00000345146|IDH1	nc|ENSG00000182054|P48735-2|IDH2	nc|ENSG00000182054|P48735-2|IDH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8094482421875	2	542.809105	1083.60366	0.72218	0.00039201	-0.11047	-5.9963E-05	0.61171	0.00033204	542.8089450799413	45.023	0.58616	45.098	44.808	45.394	0.075047					47	21	3	0	0	0	0.0035277	1	10019	10019		112.04	56.538	1	823900			44182	7266	25579	25580	53707	53707					0.06519932737569434
SPNGTIRNIL	10	Unmodified	_SPNGTIRNIL_					0	0	0		nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2;ENST00000462386.5_1_2:209112975-209118617:-|nuORF;ENSG00000138413|ENST00000345146|IDH1	nc|ENSG00000182054|P48735-2|IDH2	nc|ENSG00000182054|P48735-2|IDH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	542.809105	1083.60366	0.56722	0.00030789	0.15379	8.3479E-05	0.72101	0.00039137	542.8090393723445	45.247	0.56886	45.247	44.961	45.53	0	0.10858	0.00013529	NaN	112.04	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	937460			44183	7266	25579	25580							0.06519932737569434
SPNGTIRNIL	10	Unmodified	_SPNGTIRNIL_					0	0	0		nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2;ENST00000462386.5_1_2:209112975-209118617:-|nuORF;ENSG00000138413|ENST00000345146|IDH1	nc|ENSG00000182054|P48735-2|IDH2	nc|ENSG00000182054|P48735-2|IDH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	542.809105	1083.60366	0.63622	0.00034535	0.035951	1.9514E-05	0.67218	0.00036486	542.8089129646206	45.001	0.52694	45.069	44.843	45.37	0.068569	-0.068843	7.3634E-06	NaN	112.04	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	876480			44184	7266	25579	25580							0.06519932737569434
SPNKHNRL	8	Unmodified	_SPNKHNRL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2671813964844	2	483.267407	964.520262	-0.14364	-6.9417E-05	-0.20652	-9.9802E-05	-0.35016	-0.00016922	483.26724794390174	12.308	0.21304	12.308	12.219	12.433	0					11	6	2	0	0	0	0.45431	1	103	103		4.3292	0	1	88792			44185	6196	25580	25581	53708	53708					0.03658241080370317
SPNKHNRL	8	Unmodified	_SPNKHNRL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2672424316406	2	483.267407	964.520262	-0.036038	-1.7416E-05	-0.35635	-0.00017221	-0.39239	-0.00018963	483.26726029687904	12.306	0.28692	12.209	12.122	12.409	-0.096607					16	9	3	0	0	0	0.44569	1	104	104		7.2892	2.5332	1	104880			44186	6196	25580	25581	53709	53709					0.03658241080370317
SPNKHNRL	8	Unmodified	_SPNKHNRL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.26715087890625	2	483.267407	964.520262	-0.16371	-7.9118E-05	-0.0049447	-2.3896E-06	-0.16866	-8.1508E-05	483.26734147591395	12.316	0.31534	12.248	12.118	12.434	-0.06806					15	10	2	0	0	0	0.43302	1	99	99		11.64	6.8843	1	75312			44187	6196	25580	25581	53710	53710					0.03658241080370317
SPNKSQDWYL	10	Unmodified	_SPNKSQDWYL_					0	0	0			REV__ENST00000355653.7_1_17:41166726-41167353:-|nuORF	REV__ENST00000355653.7_1_17:41166726-41167353:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.2840576171875	2	619.296027	1236.5775	0.55165	0.00034164	-0.20123	-0.00012462	0.35042	0.00021701	619.295965194068	54.479	0.2768	54.479	54.374	54.651	0					15	9	2	0	0	0	0.31581	1	12922	12922		7.609	1.8771	1	275080	+		44188	20193	25581	25582	53711	53711					-0.0313238122457733
SPNLGSLGIA	10	Unmodified	_SPNLGSLGIA_					0	0	0			REV__nc|ENSG00000028277|P09086-3|POU2F2	REV__nc|ENSG00000028277|P09086-3|POU2F2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2403564453125	2	464.758549	927.502546	0.098168	4.5624E-05	-0.42	-0.0001952	-0.32183	-0.00014957	464.7582844755574	20.691	0.77159	20.691	20.456	21.228	0					44	26	2	0	0	0	0.32054	1	2694	2694		3.2813	0	1	101180	+		44189	13489	25582	25583	53712	53712					0.035894810348509054
SPNLRCFTF	9	Unmodified	_SPNLRCFTF_					0	0	0		ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;ENSG00000117481|ENST00000474844|NSUN4	ENST00000475281.1_1_1:46810505-46810817:+|nuORF	ENST00000475281.1_1_1:46810505-46810817:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8078002929688	2	542.765852	1083.51715	1.057	0.00057371	-0.084657	-4.5949E-05	0.97236	0.00052776	542.7659261067938	78.349	0.59642	78.319	78.062	78.658	-0.030434					50	22	3	0	0	0	0.24471	1	20354	20354		12.241	1.4167	1	230910			44190	2795	25583	25584	53713	53713					-0.021267700886710372
SPNLRLLDL	9	Unmodified	_SPNLRLLDL_					0	0	0		ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.8092651367188	2	520.808574	1039.60259	0.46604	0.00024272	-1.9793	-0.0010308	-1.5133	-0.00078812	520.8073752817461	64.787	0.89211	64.787	64.539	65.431	0					97	32	4	0	0	0	0.0074885	1	16092	16092		83.278	13.94	1	2804600			44191	7288	25584	25585	53714	53714					0.08437718368668357
SPNLRLLDL	9	Unmodified	_SPNLRLLDL_					0	0	0		ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.8091430664062	2	520.808574	1039.60259	0.48342	0.00025177	-1.9701	-0.0010261	-1.4867	-0.0007743	520.8073713956769	64.713	0.9096	64.805	64.554	65.464	0.092888					84	33	4	0	0	0	0.0074885	1	16059	16059		83.278	13.94	1	3129800			44192	7288	25584	25585	53715	53715					0.08437718368668357
SPNLRLLDL	9	Unmodified	_SPNLRLLDL_					0	0	0		ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.8096923828125	2	520.808574	1039.60259	0.3409	0.00017754	-1.8366	-0.0009565	-1.4957	-0.00077896	520.8074148746997	64.826	0.70615	64.816	64.552	65.258	-0.0095291					79	25	4	0	0	0	0.0074885	1	16087	16087		83.278	13.94	1	3025000			44193	7288	25584	25585	53716	53716					0.08437718368668357
SPNLSYLEV	9	Unmodified	_SPNLSYLEV_					0	0	0			REV__ENSG00000065183|ENST00000349139|WDR3	REV__ENSG00000065183|ENST00000349139|WDR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.7389831542969	2	511.263665	1020.51278	-0.064384	-3.2917E-05	-3.0803	-0.0015748	-3.1446	-0.0016077	511.2626386275653	15.031	0.51185	14.967	14.646	15.158	-0.064414					37	17	3	0	0	0	0.25988	1	875	875		3.9444	0	1	96567	+		44194	13659	25585	25586	53717	53717					0.003340439694284214
SPNPAALLTL	10	Unmodified	_SPNPAALLTL_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7904052734375	2	498.78985	995.565146	0.79838	0.00039822	-0.054423	-2.7146E-05	0.74395	0.00037108	498.78992598106635	77.59	0.74551	77.559	77.287	78.033	-0.031334					53	26	3	0	0	0	0.020018	1	20017	20017		71.708	16.934	1	237370			44195	3453	25586	25587	53718	53718					0.06718627103043673
SPNPAALLTL	10	Unmodified	_SPNPAALLTL_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	498.78985	995.565146	0.70803	0.00035316	-0.11983	-5.9771E-05	0.5882	0.00029339	498.7900302665531	77.519	0.99028	77.575	77.233	78.223	0.055412	0.010991	-6.9306E-05	NaN	71.708	60	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218690			44196	3453	25586	25587							0.06718627103043673
SPNPARGHSV	10	Unmodified	_SPNPARGHSV_					0	0	0		nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC	nc|ENSG00000136997|P01106-1|MYC	nc|ENSG00000136997|P01106-1|MYC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.73876953125	2	511.262322	1020.51009	0.021233	1.0856E-05	-0.80834	-0.00041328	-0.78711	-0.00040242	511.2627344713276	14.819	0.53853	14.819	14.561	15.1	0					35	18	3	0	0	0	0.31473	1	835	835		13.615	3.5409	1	86706			44197	4021	25587	25588	53719	53719					0.0006563335514329083
SPNPARGHSV	10	Unmodified	_SPNPARGHSV_					0	0	0		nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC	nc|ENSG00000136997|P01106-1|MYC	nc|ENSG00000136997|P01106-1|MYC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.739013671875	2	511.262322	1020.51009	0.02197	1.1232E-05	-0.66064	-0.00033776	-0.63867	-0.00032653	511.2628848477566	14.932	0.45152	14.822	14.587	15.038	-0.10982					33	15	3	0	0	0	0.31642	1	867	867		10.8	1.4164	1	102730			44198	4021	25587	25588	53720	53720					0.0006563335514329083
SPNPIGRT	8	Unmodified	_SPNPIGRT_					0	0	0		ENST00000573209.1_1_17:7358720-7358933:+|nuORF	ENST00000573209.1_1_17:7358720-7358933:+|nuORF	ENST00000573209.1_1_17:7358720-7358933:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2431335449219	2	421.229959	840.445365	-0.25488	-0.00010736	-0.24654	-0.00010385	-0.50142	-0.00021122	421.2298847691672	15.749	0.30121	15.749	15.591	15.892	0					15	10	2	0	0	0	0.45023	1	1099	1099		5.7319	0.97584	1	29079			44199	12033	25588	25589	53721	53721					0.018760585491463644
SPNPIGRT	8	Unmodified	_SPNPIGRT_					0	0	0		ENST00000573209.1_1_17:7358720-7358933:+|nuORF	ENST00000573209.1_1_17:7358720-7358933:+|nuORF	ENST00000573209.1_1_17:7358720-7358933:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.2432556152344	2	421.229959	840.445365	-0.12529	-5.2776E-05	-0.085552	-3.6037E-05	-0.21084	-8.8813E-05	421.2298237210919	15.855	0.48759	15.793	15.607	16.094	-0.062534					21	16	2	0	0	0	0.42894	1	1126	1126		13.042	1.4022	1	26452			44200	12033	25588	25589	53722	53722					0.018760585491463644
SPNQARAQAAL	11	Unmodified	_SPNQARAQAAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;PTBP1|p.E189Gfs*76|1|0.06|ENSG00000011304|chr19:804662-804678|AGAACCTCTTCTACCCT/-|frameshift_variant;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8018188476562	2	563.801811	1125.58907	0.22395	0.00012626	-0.11529	-6.4999E-05	0.10866	6.1263E-05	563.801747721514	24.508	1.1238	24.508	24.058	25.182	0					114	38	5	0	0	0	0.00039266	3	3780	3728;3780;3829		105.35	75.505	1	1987200			44201	440	25589	25590	53723;53724;53725	53724					0.03129860589410782
SPNQARAQAAL	11	Unmodified	_SPNQARAQAAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;PTBP1|p.E189Gfs*76|1|0.06|ENSG00000011304|chr19:804662-804678|AGAACCTCTTCTACCCT/-|frameshift_variant;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8018188476562	2	563.801811	1125.58907	0.33899	0.00019112	-0.17276	-9.7404E-05	0.16622	9.3718E-05	563.8016931274219	24.642	1.1991	24.586	24.283	25.482	-0.055931					109	41	4	0	0	0	7.7232E-09	3	3823	3774;3823;3872		146.68	110.17	1	2367900			44202	440	25589	25590	53726;53727;53728	53727					0.03129860589410782
SPNQARAQAAL	11	Unmodified	_SPNQARAQAAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;PTBP1|p.E189Gfs*76|1|0.06|ENSG00000011304|chr19:804662-804678|AGAACCTCTTCTACCCT/-|frameshift_variant;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.8018188476562	2	563.801811	1125.58907	0.051726	2.9163E-05	0.03555	2.0043E-05	0.087276	4.9206E-05	563.8018107067996	24.589	1.1486	24.558	24.258	25.406	-0.031408					97	39	4	0	0	0	7.4163E-13	3	3803	3760;3803;3846		169.92	118.29	1	2825800			44203	440	25589	25590	53729;53730;53731	53730					0.03129860589410782
SPNSKVNTL	9	Unmodified	_SPNSKVNTL_					0	0	0		ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2619934082031	2	480.261456	958.50836	0.3004	0.00014427	0.0056525	2.7147E-06	0.30606	0.00014699	480.2613112228066	21.067	0.9585	21.067	20.772	21.731	0					83	33	5	0	0	0	0.029232	1	2702	2702		84.522	31.118	1	411100			44204	1251	25590	25591	53732	53732					0.027445795465382616
SPNSKVNTL	9	Unmodified	_SPNSKVNTL_					0	0	0		ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2620849609375	2	480.261456	958.50836	0.45953	0.00022069	-0.53348	-0.00025621	-0.07396	-3.552E-05	480.2612499007435	21.213	0.84206	21.103	20.864	21.706	-0.11003					61	29	3	0	0	0	0.0019437	1	2752	2752		111.31	37.109	1	510350			44205	1251	25590	25591	53733	53733					0.027445795465382616
SPNSKVNTL	9	Unmodified	_SPNSKVNTL_					0	0	0		ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	ENSG00000084754|ENST00000380649|HADHA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.26214599609375	2	480.261456	958.50836	0.37326	0.00017926	-0.4649	-0.00022327	-0.091635	-4.4009E-05	480.2612027868115	21.12	0.79482	21.068	20.835	21.63	-0.052912					71	27	3	0	0	0	0.00078897	1	2724	2724		125.04	49.277	1	489390			44206	1251	25590	25591	53734	53734					0.027445795465382616
SPNSSPRTL	9	Unmodified	_SPNSSPRTL_					0	0	0		ENSG00000170832|ENST00000300896|USP32;nc|ENSG00000129204|P35125-2|USP6;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;ENST00000444558.5_1_17:16701792-16703686:+|nuORF;ENST00000448331.7_2_17:16701792-16704365:+|nuORF;ENSG00000129204|ENST00000574788|USP6	ENSG00000170832|ENST00000300896|USP32;ENSG00000129204|ENST00000574788|USP6	ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2611999511719	2	479.751256	957.487959	0.4441	0.00021306	-1.3152	-0.00063095	-0.87106	-0.00041789	479.7508325165687	21.309	0.62414	21.199	20.923	21.548	-0.11003					39	21	4	0	0	0	0.21303	1	2796	2796		21.747	6.4982	1	147230			44207	6482;3415	25591	25592	53735	53735					0.00751408886731042
SPNTDREVL	9	Unmodified	_SPNTDREVL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7621459960938	2	515.76182	1029.50909	0.25052	0.00012921	0.34626	0.00017859	0.59678	0.0003078	515.7619980747901	27.147	0.6606	27.147	26.813	27.474	0					49	22	3	0	0	0	0.18378	1	4561	4561		26.021	3.3626	1	273900			44208	619	25592	25593	53736	53736					-0.004486258044153146
SPNTDREVL	9	Unmodified	_SPNTDREVL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.24951171875	2	515.76182	1029.50909	0.12509	6.4515E-05	0.3042	0.0001569	0.42929	0.00022141	515.7619677828512	27.142	0.67426	27.12	26.737	27.411	-0.021412					52	23	3	0	0	0	0.19686	1	4552	4552		31.268	3.6395	1	301700			44209	619	25592	25593	53737	53737					-0.004486258044153146
SPNTDREVL	9	Unmodified	_SPNTDREVL_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.3032836914062	2	515.76182	1029.50909	0.17068	8.8031E-05	0.54361	0.00028038	0.71429	0.00036841	515.7622335212432	27.168	0.69725	27.156	26.741	27.438	-0.01156					49	24	3	0	0	0	0.22143	1	4528	4528		14.405	2.9107	1	305640			44210	619	25592	25593	53738	53738					-0.004486258044153146
SPPEIYPQF	9	Unmodified	_SPPEIYPQF_					0	0	0			REV__nc|ENSG00000185436|Q8IU57-2|IFNLR1	REV__nc|ENSG00000185436|Q8IU57-2|IFNLR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.9099731445312	2	539.266207	1076.51786	0.51236	0.0002763	-0.97114	-0.00052371	-0.45878	-0.00024741	539.2656575900296	30.242	0.61773	30.27	30.103	30.721	0.027946					44	21	3	0	0	0	0.25202	1	5488	5488		10.824	0.024421	1	199330	+		44211	18380	25593	25594	53739	53739					-0.017336521679453654
SPPEIYPQF	9	Unmodified	_SPPEIYPQF_					0	0	0			REV__nc|ENSG00000185436|Q8IU57-2|IFNLR1	REV__nc|ENSG00000185436|Q8IU57-2|IFNLR1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	539.266207	1076.51786	0.5577	0.00030075	-0.83478	-0.00045017	-0.27708	-0.00014942	539.2659090923764	30.299	0.49928	30.299	30.088	30.587	0	0.015753	-0.00018901	NaN	10.824	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165760	+		44212	18380	25593	25594							-0.017336521679453654
SPPEIYPQF	9	Unmodified	_SPPEIYPQF_					0	0	0			REV__nc|ENSG00000185436|Q8IU57-2|IFNLR1	REV__nc|ENSG00000185436|Q8IU57-2|IFNLR1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	539.266207	1076.51786	0.22056	0.00011894	-0.38963	-0.00021011	-0.16907	-9.1172E-05	539.2659921037451	30.254	0.70629	30.282	30.052	30.758	0.027157	-0.0019844	0.00029109	NaN	10.824	42	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205370	+		44213	18380	25593	25594							-0.017336521679453654
SPPHTPALIA	10	Unmodified	_SPPHTPALIA_					0	0	0			REV__ENST00000441339.2_11:69061685-69061946:+|nuORF	REV__ENST00000441339.2_11:69061685-69061946:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7634582519531	2	502.282192	1002.54983	0.40459	0.00020322	-4.3239	-0.0021718	-3.9193	-0.0019686	502.27963828065424	30.471	0.39494	30.499	30.298	30.693	0.027946					17	13	2	0	0	0	0.30586	1	5586	5586		19.257	3.4098	1	79637	+		44214	21050	25594	25595	53740	53740					0.04865760305847289
SPPLPPPLLL	10	Unmodified	_SPPLPPPLLL_					0	0	0			REV__ENST00000430799.7_2_1:27107243-27107537:+|nuORF	REV__ENST00000430799.7_2_1:27107243-27107537:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3282470703125	2	522.328611	1042.64267	0.60093	0.00031388	-0.22575	-0.00011792	0.37518	0.00019597	522.3283899779809	88.347	2.3812	88.347	87.951	90.332	0					340	143	5	0	0	0	0.33817	1	23824	23824		14.838	0	1	2795300	+		44215	20949	25595	25596	53741	53741					0.12305265039231017
SPPLRPRLLL	10	Unmodified	_SPPLRPRLLL_					0	0	0		ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3772583007812	2	581.376958	1160.73936	0.3134	0.0001822	-0.089952	-5.2296E-05	0.22344	0.0001299	581.3767413303945	49.788	0.47809	49.788	49.572	50.05	0					30	17	3	0	0	0	0.26265	1	11482	11482		24.991	7.8781	1	252480			44216	1330	25596	25597	53742	53742					0.16542252319050021
SPPLRPRLLL	10	Unmodified	_SPPLRPRLLL_					0	0	0		ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	581.376958	1160.73936	0.31013	0.0001803	-0.0048056	-2.7939E-06	0.30532	0.00017751	581.3768646343162	49.777	0.41458	49.822	49.593	50.007	0.044891	0.010866	1.3698E-05	NaN	24.991	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268270			44217	1330	25596	25597							0.16542252319050021
SPPLRPRLLL	10	Unmodified	_SPPLRPRLLL_					0	0	0		ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	581.376958	1160.73936	0.29921	0.00017395	0.059219	3.4428E-05	0.35843	0.00020838	581.3768803360696	49.804	0.3749	49.824	49.591	49.966	0.020691	0.012868	8.8143E-05	NaN	24.991	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263750			44218	1330	25596	25597							0.16542252319050021
SPPRGDRTLLV	11	Unmodified	_SPPRGDRTLLV_					0	0	0		ENSG00000185946|ENST00000423855|RNPC3;nc|ENSG00000185946|Q96LT9-2|RNPC3	ENSG00000185946|ENST00000423855|RNPC3	ENSG00000185946|ENST00000423855|RNPC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2343444824219	3	404.234933	1209.68297	-0.43086	-0.00017417	1.3503	0.00054585	0.91947	0.00037168	404.23536913386204	18.435	0.59572	18.377	18.059	18.654	-0.058174					38	20	4	0	0	0	0.44351	1	1922	1922		5.5233	0.63098	1	72389			44219	7570	25597	25598	53743	53743					0.08651579691695588
SPPSRRLK	8	Unmodified	_SPPSRRLK_					0	0	0			REV__ENST00000454000.6_1_1:21766682-21771446:+|nuORF	REV__ENST00000454000.6_1_1:21766682-21771446:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.80035400390625	2	470.787976	939.561398	-0.048295	-2.2737E-05	-0.58099	-0.00027352	-0.62929	-0.00029626	470.78798877127866	17.194	1.4945	17.077	16.772	18.267	-0.11739					155	52	6	0	0	0	0.45169	1	1832	1832		5.2307	0.90143	1	6278200	+		44220	21144	25598	25599	53744	53744					0.08920002119850778
SPPTVLVI	8	Unmodified	_SPPTVLVI_					0	0	0		ENSG00000163382|ENST00000368235|NAXE;nc|ENSG00000163382|Q8NCW5-2|NAXE;ENST00000467374.1_1_1:156561697-156562477:+|nuORF	ENSG00000163382|ENST00000368235|NAXE	ENSG00000163382|ENST00000368235|NAXE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.25750732421875	2	413.257654	824.500755	-0.035438	-1.4645E-05	0.074614	3.0835E-05	0.039176	1.619E-05	413.2575869817443	66.845	1.1875	66.845	66.545	67.732	0					116	41	4	0	0	0	0.058048	1	16762	16762		74.396	14.601	1	4634100			44221	5673	25599	25600	53745	53745					0.08148472016898722
SPPTVLVI	8	Unmodified	_SPPTVLVI_					0	0	0		ENSG00000163382|ENST00000368235|NAXE;nc|ENSG00000163382|Q8NCW5-2|NAXE;ENST00000467374.1_1_1:156561697-156562477:+|nuORF	ENSG00000163382|ENST00000368235|NAXE	ENSG00000163382|ENST00000368235|NAXE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2575378417969	2	413.257654	824.500755	0.24297	0.00010041	-0.2497	-0.00010319	-0.0067288	-2.7807E-06	413.2574679311337	66.805	1.5119	66.889	66.494	68.006	0.083824					121	53	4	0	0	0	0.058048	2	16721	16721;16772		74.396	14.601	1	5234900			44222	5673	25599	25600	53746;53747	53746					0.08148472016898722
SPPTVLVI	8	Unmodified	_SPPTVLVI_					0	0	0		ENSG00000163382|ENST00000368235|NAXE;nc|ENSG00000163382|Q8NCW5-2|NAXE;ENST00000467374.1_1_1:156561697-156562477:+|nuORF	ENSG00000163382|ENST00000368235|NAXE	ENSG00000163382|ENST00000368235|NAXE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.25762939453125	2	413.257654	824.500755	0.038932	1.6089E-05	-0.01824	-7.5377E-06	0.020693	8.5514E-06	413.2575663648208	66.912	1.1911	66.898	66.511	67.702	-0.013596					116	41	4	0	0	0	0.058048	2	16740	16740;16784		74.396	7.361	1	4961900			44223	5673	25599	25600	53748;53749	53748					0.08148472016898722
SPPVVLFDLF	10	Unmodified	_SPPVVLFDLF_					0	0	0			REV__ENST00000486964.5_1_2:86305209-86332944:-|nuORF	REV__ENST00000486964.5_1_2:86305209-86332944:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3296508789062	2	567.3157	1132.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.27	1	113.29	112.79	113.79	0.014824								0	0	0	0.35948	1	29473	29473		10.824	2.9138	1		+		44224	13703	25600	25601	53750	53750					0.05584370796918847
SPQEARNML	9	Oxidation (M)	_SPQEARNM(Oxidation (M))L_		SPQEARNM(1)L		SPQEARNM(94)L	0	0	1		nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2553100585938	2	531.255848	1060.49714	0.61351	0.00032593	-0.98811	-0.00052494	-0.37461	-0.00019901	531.2553683865335	21.028	0.97705	21.028	20.65	21.627	0					95	33	4	0	0	0	0.0040516	3	2749	2698;2749;2801		93.938	40.534	1	448940			44225	1721	25601	25602	53751;53752;53753	53752		211			-0.030685658192624032
SPQEARNML	9	Oxidation (M)	_SPQEARNM(Oxidation (M))L_		SPQEARNM(1)L		SPQEARNM(100)L	0	0	1		nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2561645507812	2	531.255848	1060.49714	0.59865	0.00031804	-0.98596	-0.0005238	-0.38731	-0.00020576	531.2554126927039	21.251	0.87158	21.141	20.753	21.625	-0.11003					85	30	5	0	0	0	0.0028032	4	2760	2713;2760;2804;2852		103.82	58.084	1	593060			44226	1721	25601	25602	53754;53755;53756;53757	53755		211			-0.030685658192624032
SPQEARNML	9	Oxidation (M)	_SPQEARNM(Oxidation (M))L_		SPQEARNM(1)L		SPQEARNM(85)L	0	0	1		nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.25537109375	2	531.255848	1060.49714	0.59951	0.00031849	-0.76312	-0.00040541	-0.16361	-8.6919E-05	531.2554103443554	21.187	0.93459	21.135	20.695	21.63	-0.05291					84	32	3	0	0	0	0.0066776	4	2775	2682;2731;2775;2827		84.522	38.782	1	554790			44227	1721	25601	25602	53758;53759;53760;53761	53760		211			-0.030685658192624032
SPQEKREL	8	Unmodified	_SPQEKREL_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.28045654296875	2	493.766906	985.519259	0.063774	3.1489E-05	0.21871	0.00010799	0.28249	0.00013948	493.76661487084453	15.218	0.49353	15.154	14.898	15.391	-0.064413					36	16	3	0	0	0	0.34131	1	889	889		12.532	0.89125	1	49774			44228	1129	25602	25603	53762	53762					0.025919819208070294
SPQEKREL	8	Unmodified	_SPQEKREL_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.766906	985.519259	0.10176	5.0245E-05	-0.86175	-0.00042551	-0.76	-0.00037526	493.7664602005328	15.211	0.30399	15.211	15.044	15.348	0	0.028782	-0.00034235	NaN	12.532	20	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47390			44229	1129	25602	25603							0.025919819208070294
SPQEMPLRVI	10	Unmodified	_SPQEMPLRVI_					0	0	0			REV__ENST00000478188.5_1_4:57891702-57896440:+|nuORF	REV__ENST00000478188.5_1_4:57891702-57896440:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8309326171875	2	585.320991	1168.62743	0.42971	0.00025152	-1.3184	-0.0007717	-0.88871	-0.00052018	585.3203341956623	53.449	0.36751	53.44	53.218	53.585	-0.0096092					22	13	2	0	0	0	0.31207	1	12589	12589		17.443	5.8023	1	402000	+		44230	21446	25603	25604	53763	53763					0.04986030179725276
SPQERSRVL	9	Unmodified	_SPQERSRVL_					0	0	0		nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1;nc|ENSG00000118514|Q9H2A2-2|ALDH8A1;nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.299072265625	2	536.298904	1070.58326	0.39399	0.00021129	0.0097016	5.203E-06	0.40369	0.0002165	536.2988285832453	17.914	0.98587	17.914	17.628	18.614	0					93	33	5	0	0	0	0.0030911	2	1755	1755;1803		101.54	62.929	1	1475700			44231	2832	25604	25605	53764;53765	53764					0.050787620777555276
SPQERSRVL	9	Unmodified	_SPQERSRVL_					0	0	0		nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1;nc|ENSG00000118514|Q9H2A2-2|ALDH8A1;nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2991333007812	2	536.298904	1070.58326	0.16489	8.8431E-05	0.23395	0.00012547	0.39884	0.0002139	536.2989605355583	18.073	0.95239	17.956	17.726	18.678	-0.11739					97	32	5	0	0	0	0.0023309	3	1839	1794;1839;1893		107.56	73.162	1	1411500			44232	2832	25604	25605	53766;53767;53768	53767					0.050787620777555276
SPQERSRVL	9	Unmodified	_SPQERSRVL_					0	0	0		nc|ENSG00000118514|Q9H2A2-4|ALDH8A1;ENSG00000118514|ENST00000265605|ALDH8A1;nc|ENSG00000118514|Q9H2A2-2|ALDH8A1;nc|ENSG00000118514|Q9H2A2-3|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	nc|ENSG00000118514|Q9H2A2-4|ALDH8A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2991333007812	2	536.298904	1070.58326	0.25704	0.00013785	0.12798	6.8636E-05	0.38502	0.00020649	536.2988991166349	18.07	0.91286	18.012	17.768	18.681	-0.058172					104	32	5	0	0	0	0.0023309	3	1840	1795;1840;1893		107.56	73.162	1	1306200			44233	2832	25604	25605	53769;53770;53771	53770					0.050787620777555276
SPQGRVMTI	9	Oxidation (M)	_SPQGRVM(Oxidation (M))TI_		SPQGRVM(1)TI		SPQGRVM(160)TI	0	0	1		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.763427734375	2	502.763309	1003.51206	0.21018	0.00010567	-0.1849	-9.2961E-05	0.02528	1.271E-05	502.7632922000144	25.514	1.1188	25.514	25.153	26.271	0					85	38	4	0	0	0	4.216E-07	2	4076	4076;4120		163.69	102.33	1	3017300			44234	6364	25605	25606	53772;53773	53772		747			0.01044926048734851
SPQGRVMTI	9	Oxidation (M)	_SPQGRVM(Oxidation (M))TI_		SPQGRVM(1)TI		SPQGRVM(140)TI	0	0	1		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.763427734375	2	502.763309	1003.51206	0.046068	2.3161E-05	0.1597	8.0292E-05	0.20577	0.00010345	502.7634299616144	25.57	1.1669	25.514	25.186	26.353	-0.055931					116	40	5	0	0	0	0.00010651	2	4049	4049;4101		139.78	83.605	1	3028400			44235	6364	25605	25606	53774;53775	53774		747			0.01044926048734851
SPQGRVMTI	9	Oxidation (M)	_SPQGRVM(Oxidation (M))TI_		SPQGRVM(1)TI		SPQGRVM(120)TI	0	0	1		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.76324462890625	2	502.763309	1003.51206	0.053948	2.7123E-05	0.12609	6.3395E-05	0.18004	9.0518E-05	502.76347098309344	25.569	1.0802	25.537	25.209	26.289	-0.031408					105	38	4	0	0	0	0.0013864	2	4049	4049;4097		117.84	65.569	1	3040300			44236	6364	25605	25606	53776;53777	53776		747			0.01044926048734851
SPQKLRLEMA	10	Unmodified	_SPQKLRLEMA_					0	0	0			REV__ENST00000602204.1_1_19:16980786-16982347:+|nuORF	REV__ENST00000602204.1_1_19:16980786-16982347:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.2698974609375	2	586.82644	1171.63833	0.83594	0.00049055	2.4357	0.0014293	3.2717	0.0019199	586.8279075489451	50.179	0.43634	50.224	50.084	50.52	0.044891					19	15	2	0	0	0	0.31691	1	11583	11583		9.3831	2.0939	1	174770	+		44237	15344	25606	25607	53778	53778					0.05937432554037514
SPQKRING	8	Unmodified	_SPQKRING_					0	0	0			REV__chr2:69789926-69790680|323|10.1|0.0|19.95|-|1|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|3	REV__chr2:69789926-69790680|323|10.1|0.0|19.95|-|1|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2561340332031	2	450.256508	898.498464	-0.19576	-8.8144E-05	0.093997	4.2323E-05	-0.10177	-4.5821E-05	450.2562609973857	13.079	0.42442	13.011	12.878	13.302	-0.067495					35	14	3	0	0	0	0.3671	1	324	324		23.148	2.6948	1	312430	+		44238	13192	25607	25608	53779	53779					0.045154363318033575
SPQKRING	8	Unmodified	_SPQKRING_					0	0	0			REV__chr2:69789926-69790680|323|10.1|0.0|19.95|-|1|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|3	REV__chr2:69789926-69790680|323|10.1|0.0|19.95|-|1|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	450.256508	898.498464	-0.13768	-6.1993E-05	-0.063238	-2.8473E-05	-0.20092	-9.0466E-05	450.25624467311275	13.041	0.38371	13.041	12.925	13.309	0	0.014938	-9.0885E-05	NaN	23.148	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315800	+		44239	13192	25607	25608							0.045154363318033575
SPQKRING	8	Unmodified	_SPQKRING_					0	0	0			REV__chr2:69789926-69790680|323|10.1|0.0|19.95|-|1|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|3	REV__chr2:69789926-69790680|323|10.1|0.0|19.95|-|1|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	450.256508	898.498464	-0.15874	-7.1476E-05	0.10806	4.8654E-05	-0.050687	-2.2822E-05	450.2563276757218	13.126	0.40652	13.027	12.869	13.276	-0.099291	0.00034001	6.3369E-05	NaN	23.148	35	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297330	+		44240	13192	25607	25608							0.045154363318033575
SPQKRING	8	Unmodified	_SPQKRING_					0	0	0			REV__chr2:69789926-69790680|323|10.1|0.0|19.95|-|1|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|3	REV__chr2:69789926-69790680|323|10.1|0.0|19.95|-|1|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	450.256508	898.498464	-0.19576	-8.8144E-05	0.093997	4.2323E-05	-0.10177	-4.5821E-05	450.2562609973857	13.079	0.42442	13.011	12.878	13.302	-0.067495	-0.015278	5.0707E-05	NaN	23.148	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312430	+		44241	13192	25607	25608							0.045154363318033575
SPQKTMSVL	9	Oxidation (M)	_SPQKTM(Oxidation (M))SVL_		SPQKTM(1)SVL		SPQKTM(46)SVL	0	0	1		ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;ENST00000411772.5_2_15:43699583-43738985:-|nuORF;TP53BP1|p.E1130Kfs*14|1|0.19|ENSG00000067369|chr15:43432470-43432470|C/-|frameshift_variant;TP53BP1|p.N1428Cfs*49|1|0.21|ENSG00000067369|chr15:43420686-43420689|AGTT/-|frameshift_variant;TP53BP1|p.L1477Rfs*8|1|0.24|ENSG00000067369|chr15:43420542-43420543|AG/-|frameshift_variant	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.76556396484375	2	503.765517	1005.51648	0.13246	6.6728E-05	0.072923	3.6736E-05	0.20538	0.00010346	503.76554595123326	23.187	0.89496	23.099	22.762	23.657	-0.08761					89	31	4	0	0	0	0.068498	1	3414	3414		46.022	24.485	1	752740			44242	864	25608	25609	53780	53780		110			0.013943904716597899
SPQKVTLYL	9	Unmodified	_SPQKVTLYL_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.8057250976562	2	524.8055	1047.59645	0.63195	0.00033165	-0.31824	-0.00016701	0.31371	0.00016464	524.805290059341	49.472	1.1904	49.472	49.19	50.381	0					105	43	5	0	0	0	0.0032746	3	11402	11353;11402;11445		100.09	33.634	1	8479100			44243	5453	25609	25610	53781;53782;53783	53782					0.07455200137133033
SPQKVTLYL	9	Unmodified	_SPQKVTLYL_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8058471679688	2	524.8055	1047.59645	0.44333	0.00023266	-0.22706	-0.00011916	0.21627	0.0001135	524.8053493286502	49.504	0.97612	49.549	49.266	50.242	0.044891					93	36	4	0	0	0	0.003673	3	11397	11354;11397;11443		96.936	47.381	1	9637800			44244	5453	25609	25610	53784;53785;53786	53785					0.07455200137133033
SPQKVTLYL	9	Unmodified	_SPQKVTLYL_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8057250976562	2	524.8055	1047.59645	0.40507	0.00021258	-0.12213	-6.4094E-05	0.28294	0.00014849	524.8053966060346	49.442	1.0575	49.474	49.18	50.237	0.032043					93	38	4	0	0	0	0.0028542	3	11376	11332;11376;11426		103.42	45.697	1	8670200			44245	5453	25609	25610	53787;53788;53789	53788					0.07455200137133033
SPQLQALRKH	10	Unmodified	_SPQLQALRKH_					0	0	0			REV__ENST00000481894.1_1_1:115138166-115167938:-|nuORF	REV__ENST00000481894.1_1_1:115138166-115167938:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.345703125	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.61	1	113.62	113.12	114.12	0.014824								0	0	0	0.38189	1	29556	29556		1.1933	0.12188	1		+		44246	17914	25610	25611	53790	53790					0.09147016757128767
SPQPAQQKL	9	Unmodified	_SPQPAQQKL_					0	0	0		ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.8006286621094	2	498.777274	995.539994	0.44521	0.00022206	-0.97738	-0.0004875	-0.53217	-0.00026544	498.77679119692664	21.327	0.49257	21.327	21.108	21.601	0					25	16	2	0	0	0	0.2524	1	2810	2810		11.495	3.3392	1	104360			44247	4531	25611	25612	53791	53791					0.04204572300466225
SPQPAQQKL	9	Unmodified	_SPQPAQQKL_					0	0	0		ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8006896972656	2	498.777274	995.539994	0.52658	0.00026264	-0.84009	-0.00041902	-0.31351	-0.00015637	498.7765858368633	21.453	0.47442	21.353	21.16	21.635	-0.10034					32	16	3	0	0	0	0.24787	1	2837	2837		15.248	3.7538	1	101530			44248	4531	25611	25612	53792	53792					0.04204572300466225
SPQPAQQKL	9	Unmodified	_SPQPAQQKL_					0	0	0		ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.800537109375	2	498.777274	995.539994	0.39221	0.00019563	-1.0749	-0.00053613	-0.68267	-0.0003405	498.7766187939228	21.427	0.45432	21.377	21.15	21.604	-0.049377					26	15	2	0	0	0	0.25123	1	2819	2819		12.241	3.4953	1	104220			44249	4531	25611	25612	53793	53793					0.04204572300466225
SPQPGKLRSPF	11	Unmodified	_SPQPGKLRSPF_					0	0	0		nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	nc|ENSG00000136279|Q9UJU6-5|DBNL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.22784423828125	3	405.227779	1212.66151	0.19125	7.7501E-05	-0.64094	-0.00025973	-0.44968	-0.00018222	405.22769345169206	36.978	0.58511	36.978	36.7	37.285	0					47	18	4	0	0	0	0.32787	1	7581	7581		14.171	6.2253	1	346580			44250	3967	25612	25613	53794	53794					0.06368194662968563
SPQPQRAQL	9	Unmodified	_SPQPQRAQL_					0	0	0		nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2415161132812	2	512.780348	1023.54614	0.22755	0.00011669	0.25176	0.0001291	0.47931	0.00024578	512.7804689696152	24.163	0.57226	24.124	23.82	24.392	-0.038927					43	17	3	0	0	0	0.25123	1	3667	3667		12.241	12.241	1	195490			44251	2266	25613	25614	53795	53795					0.03531090531987502
SPQPSKRAGP	10	Unmodified	_SPQPSKRAGP_					0	0	0		nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5;ENST00000475613.6_1_10:79580836-79628876:-|nuORF;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-3|DLG5	nc|ENSG00000151208|Q8TDM6-4|DLG5	nc|ENSG00000151208|Q8TDM6-4|DLG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2415161132812	2	512.780348	1023.54614	0.22923	0.00011755	0.42506	0.00021796	0.6543	0.00033551	512.7805066696076	24.155	0.54172	24.082	23.756	24.298	-0.072559					44	17	3	0	0	0	0.30093	1	3673	3673		21.537	0	1	163080			44252	4944	25614	25615	53796	53796					0.035310905319988706
SPQPTARAAR	10	Unmodified	_SPQPTARAAR_					0	0	0		ENST00000321276.7_1_2:223289259-223339308:+|nuORF	ENST00000321276.7_1_2:223289259-223339308:+|nuORF	ENST00000321276.7_1_2:223289259-223339308:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7930297851562	2	527.791247	1053.56794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.48	1	119.45	118.95	119.95	-0.024361								0	0	0	0.38187	1	30843	30843		1.3295	0.13619	1				44253	9383	25615	25616	53797	53797					0.04329895280557139
SPQQVDFRSVL	11	Unmodified	_SPQQVDFRSVL_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.L1152Sfs*20|1|0.31|ENSG00000065534|chr3:123692847-123692847|T/-|frameshift_variant;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;ENST00000504946.5_1_3:123400948-123419770:-|nuORF	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.3384399414062	2	638.338227	1274.6619	0.461	0.00029428	0.018459	1.1783E-05	0.47946	0.00030606	638.3381076395063	56.979	0.52491	56.979	56.799	57.323	0					50	19	3	0	0	0	0.00077113	2	13736	13688;13736		100.07	70.226	1	987640			44254	819	25616	25617	53798;53799	53799					0.03555569592185748
SPQQVDFRSVL	11	Unmodified	_SPQQVDFRSVL_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.L1152Sfs*20|1|0.31|ENSG00000065534|chr3:123692847-123692847|T/-|frameshift_variant;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;ENST00000504946.5_1_3:123400948-123419770:-|nuORF	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.3385009765625	2	638.338227	1274.6619	0.65181	0.00041608	1.3619	0.00086933	2.0137	0.0012854	638.3397576621654	56.651	0.92912	56.73	56.358	57.287	0.078671					62	34	3	0	0	0	2.3775E-05	3	13654	13636;13654;13701		111.33	74.828	1	1210400			44255	819	25616	25617	53800;53801;53802	53801					0.03555569592185748
SPQQVDFRSVL	11	Unmodified	_SPQQVDFRSVL_					0	0	0		nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;MYLK|p.L1152Sfs*20|1|0.31|ENSG00000065534|chr3:123692847-123692847|T/-|frameshift_variant;nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;ENST00000504946.5_1_3:123400948-123419770:-|nuORF	nc|ENSG00000065534|Q15746-4|MYLK	nc|ENSG00000065534|Q15746-4|MYLK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3385009765625	2	638.338227	1274.6619	0.64135	0.0004094	0.0344	2.1959E-05	0.67575	0.00043136	638.3381012301559	57.084	0.5522	57.065	56.809	57.362	-0.019077					53	19	4	0	0	0	0.00077113	2	13738	13738;13785		100.07	70.226	1	919640			44256	819	25616	25617	53803;53804	53803					0.03555569592185748
SPQRLRGLL	9	Unmodified	_SPQRLRGLL_					0	0	0		ENSG00000164932|ENST00000330295|CTHRC1	ENSG00000164932|ENST00000330295|CTHRC1	ENSG00000164932|ENST00000330295|CTHRC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3223266601562	2	520.322183	1038.62981	0.54028	0.00028112	-0.040328	-2.0983E-05	0.49995	0.00026013	520.3221006275955	35.748	0.73694	35.748	35.52	36.256	0					52	26	3	0	0	0	0.014206	2	7204	7161;7204		72.968	48.947	1	712630			44257	5901	25617	25618	53805;53806	53806					0.11204246699730902
SPQRLRGLL	9	Unmodified	_SPQRLRGLL_					0	0	0		ENSG00000164932|ENST00000330295|CTHRC1	ENSG00000164932|ENST00000330295|CTHRC1	ENSG00000164932|ENST00000330295|CTHRC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.8242797851562	2	520.322183	1038.62981	0.43713	0.00022745	0.18598	9.677E-05	0.62312	0.00032422	520.322225755315	35.632	0.655	35.714	35.516	36.171	0.082355					45	23	3	0	0	0	0.047483	1	7137	7137		53.833	35.686	1	817720			44258	5901	25617	25618	53807	53807					0.11204246699730902
SPQRLRGLL	9	Unmodified	_SPQRLRGLL_					0	0	0		ENSG00000164932|ENST00000330295|CTHRC1	ENSG00000164932|ENST00000330295|CTHRC1	ENSG00000164932|ENST00000330295|CTHRC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.322509765625	2	520.322183	1038.62981	0.2524	0.00013133	0.37019	0.00019262	0.62259	0.00032395	520.3223517955659	35.625	0.76842	35.711	35.476	36.244	0.08625					48	27	3	0	0	0	0.018449	2	7120	7120;7172		66.457	41.466	1	779710			44259	5901	25617	25618	53808;53809	53808					0.11204246699730902
SPQRSNRDRL	10	Unmodified	_SPQRSNRDRL_					0	0	0			REV__ENST00000527129.1_1_11:76831698-76834913:+|nuORF	REV__ENST00000527129.1_1_11:76831698-76834913:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2193908691406	3	410.221687	1227.64323	-0.094181	-3.8635E-05	-3.9169	-0.0016068	-4.011	-0.0016454	410.2203367858147	24.616	1.1113	24.616	24.248	25.359	0					82	37	3	0	0	0	0.34155	1	3820	3820		14.218	2.5868	1	257060	+		44260	16455	25618	25619	53810	53810					0.0385145274099159
SPQRTYRSEV	10	Unmodified	_SPQRTYRSEV_					0	0	0		nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;ENST00000510738.2_1_12:19413894-19459437:+|nuORF	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.2106628417969	3	408.210676	1221.6102	-0.16364	-6.6801E-05	1.4015	0.00057211	1.2379	0.00050531	408.21086775594773	18.415	0.77354	18.297	17.84	18.614	-0.11739					58	26	3	0	0	0	0.309	1	1926	1926		14.171	8.6474	1	159680			44261	671	25619	25620	53811	53811					0.008258258982777988
SPQRTYRSEV	10	Unmodified	_SPQRTYRSEV_					0	0	0		nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;ENST00000510738.2_1_12:19413894-19459437:+|nuORF	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.21099853515625	3	408.210676	1221.6102	-0.27147	-0.00011082	1.3274	0.00054184	1.0559	0.00043102	408.21083728312425	18.349	0.91286	18.291	17.768	18.681	-0.058174					70	32	3	0	0	0	0.35961	1	1940	1940		10.899	2.4547	1	162970			44262	671	25619	25620	53812	53812					0.008258258982777988
SPQRTYRSEV	10	Unmodified	_SPQRTYRSEV_					0	0	0		nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;ENST00000510738.2_1_12:19413894-19459437:+|nuORF	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	408.210676	1221.6102	-0.18425	-7.5211E-05	1.1338	0.00046284	0.94958	0.00038763	408.2108334297936	18.157	0.78524	18.157	17.802	18.588	0	-0.091563	-0.00016598	NaN	14.171	53	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132830			44263	671	25619	25620							0.008258258982777988
SPQVERKMS	9	Unmodified	_SPQVERKMS_					0	0	0		nc|ENSG00000173040|Q86UK5-2|EVC2;nc|ENSG00000173040|Q86UK5-3|EVC2;ENSG00000173040|ENST00000344408|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2514038085938	2	531.274041	1060.53353	0.55359	0.00029411	-1.5729	-0.00083564	-1.0193	-0.00054153	531.2733973965317	83.579	0.17038	83.657	83.568	83.738	0.077095					9	6	2	0	0	0	0.25612	1	21883	21883		8.1555	1.8014	1	61578			44264	6688	25620	25621	53813	53813					0.0056831107744983456
SPRAAEPVQL	10	Unmodified	_SPRAAEPVQL_					0	0	0		ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2962646484375	2	534.29583	1066.57711	0.69256	0.00037003	-0.17994	-9.614E-05	0.51262	0.00027389	534.2956601254011	36.825	0.69719	36.825	36.536	37.233	0					54	24	3	0	0	0	0.11678	1	7491	7491		44.392	20.371	1	882070			44265	2112	25621	25622	53814	53814					0.04648243846236255
SPRAAEPVQL	10	Unmodified	_SPRAAEPVQL_					0	0	0		ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2960205078125	2	534.29583	1066.57711	0.44599	0.00023829	0.1304	6.9675E-05	0.57639	0.00030796	534.2958361180915	36.694	0.60175	36.781	36.516	37.117	0.08741					55	21	4	0	0	0	0.29144	1	7458	7458		26.021	6.7637	1	971240			44266	2112	25621	25622	53815	53815					0.04648243846236255
SPRAAEPVQL	10	Unmodified	_SPRAAEPVQL_					0	0	0		ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.296142578125	2	534.29583	1066.57711	0.87299	0.00046644	-0.47985	-0.00025638	0.39314	0.00021005	534.295591266593	36.659	0.65645	36.752	36.486	37.142	0.093018					55	23	3	0	0	0	0.092344	1	7452	7452		49.742	14.81	1	954860			44267	2112	25621	25622	53816	53816					0.04648243846236255
SPRAGVAALL	10	Unmodified	_SPRAGVAALL_					0	0	0		ENST00000342963.2_1_7:5459979-5460210:+|nuORF	ENST00000342963.2_1_7:5459979-5460210:+|nuORF	ENST00000342963.2_1_7:5459979-5460210:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.7779235839844	2	477.790184	953.565815	0.55149	0.0002635	-0.65843	-0.00031459	-0.10694	-5.1095E-05	477.78984477484244	20.876	0.45474	20.766	20.553	21.007	-0.11003					26	15	2	0	0	0	0.39009	1	2653	2653		5.2969	0	1	60694			44268	9535	25622	25623	53817	53817					0.08717466542748298
SPRARHFCVF	10	Unmodified	_SPRARHFCVF_					0	0	0		ENST00000586052.5_1_17:76475094-76487566:-|nuORF	ENST00000586052.5_1_17:76475094-76487566:-|nuORF	ENST00000586052.5_1_17:76475094-76487566:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.8525085449219	3	407.209953	1218.60803	0.13492	5.494E-05	1.1014	0.00044848	1.2363	0.00050342	407.21143089878865	41.973	0.17086	42.063	42.014	42.185	0.090248					7	5	2	0	0	0	0.31942	1	9132	9132		6.1918	0	1	78385			44269	12113	25623	25624	53818	53818					0.007471186794646201
SPRARPKEL	9	Unmodified	_SPRARPKEL_					0	0	0		ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3117065429688	2	527.311815	1052.60908	0.19859	0.00010472	-0.51888	-0.00027361	-0.32029	-0.00016889	527.3114805425606	14.433	0.59438	14.433	14.164	14.759	0					54	20	5	0	0	0	0.063898	1	720	720		47.732	18.65	1	624250			44270	7242	25624	25625	53819	53819					0.08487656320039605
SPRARPKEL	9	Unmodified	_SPRARPKEL_					0	0	0		ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3117065429688	2	527.311815	1052.60908	0.15269	8.0514E-05	-0.39886	-0.00021032	-0.24617	-0.00012981	527.3116110352927	14.574	0.69685	14.47	14.238	14.935	-0.10466					55	23	4	0	0	0	0.086462	1	761	761		40.239	15.248	1	536090			44271	7242	25624	25625	53820	53820					0.08487656320039605
SPRARPKEL	9	Unmodified	_SPRARPKEL_					0	0	0		ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.311767578125	2	527.311815	1052.60908	0.17508	9.232E-05	-0.31977	-0.00016862	-0.14469	-7.6299E-05	527.3116442622328	14.554	0.63336	14.488	14.32	14.954	-0.066068					58	22	4	0	0	0	0.086462	1	757	757		40.239	11.745	1	556920			44272	7242	25624	25625	53821	53821					0.08487656320039605
SPRASMGVL	9	Oxidation (M)	_SPRASM(Oxidation (M))GVL_		SPRASM(1)GVL		SPRASM(68)GVL	0	0	1		ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2445983886719	2	467.244752	932.474951	-0.020067	-9.3764E-06	-0.026231	-1.2256E-05	-0.046298	-2.1633E-05	467.2447290564129	24.944	0.84033	24.944	24.605	25.445	0					72	28	4	0	0	0	0.017549	1	3903	3903		67.838	29.663	1	1863800			44273	864	25625	25626	53822	53822		111			0.006012545029875582
SPRASMGVL	9	Oxidation (M)	_SPRASM(Oxidation (M))GVL_		SPRASM(1)GVL		SPRASM(83)GVL	0	0	1		ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2447204589844	2	467.244752	932.474951	-0.081651	-3.8151E-05	-0.029848	-1.3946E-05	-0.1115	-5.2097E-05	467.2447478999608	25.018	0.79149	24.962	24.661	25.453	-0.055931					60	27	3	0	0	0	0.0073901	2	3936	3891;3936		83.429	35.68	1	2138300			44274	864	25625	25626	53823;53824	53824		111			0.006012545029875582
SPRASMGVL	9	Oxidation (M)	_SPRASM(Oxidation (M))GVL_		SPRASM(1)GVL		SPRASM(83)GVL	0	0	1		ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2446594238281	2	467.244752	932.474951	-0.1673	-7.8171E-05	-0.016228	-7.5822E-06	-0.18353	-8.5753E-05	467.24480647463656	24.96	1.198	24.928	24.515	25.713	-0.031408					80	41	4	0	0	0	0.0073901	2	3919	3919;3962		83.429	39.57	1	2064700			44275	864	25625	25626	53825;53826	53825		111			0.006012545029875582
SPRDLVSLP	9	Unmodified	_SPRDLVSLP_					0	0	0		ENST00000498374.1_1_6:16739996-16761588:-|nuORF;ENST00000467008.5_1_6:16739996-16761659:-|nuORF;ENST00000492857.1_1_6:16739996-16761679:-|nuORF	ENST00000498374.1_1_6:16739996-16761588:-|nuORF	ENST00000498374.1_1_6:16739996-16761588:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2674255371094	2	492.279649	982.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.603	1	20.493	19.993	20.993	-0.11003								0	0	0	0.23091	1	2590	2590		12.532	1.7076	1				44276	10818	25626	25627	53827	53827					0.05277456443241135
SPRDLVSLP	9	Unmodified	_SPRDLVSLP_					0	0	0		ENST00000498374.1_1_6:16739996-16761588:-|nuORF;ENST00000467008.5_1_6:16739996-16761659:-|nuORF;ENST00000492857.1_1_6:16739996-16761679:-|nuORF	ENST00000498374.1_1_6:16739996-16761588:-|nuORF	ENST00000498374.1_1_6:16739996-16761588:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2674865722656	2	492.279649	982.544745	0.6579	0.00032387	1.2027	0.00059205	1.8606	0.00091592	492.2797897499015	20.27	0.4377	20.217	19.981	20.418	-0.05291					20	15	2	0	0	0	0.27532	1	2545	2545		12.532	4.6214	1	80065			44277	10818	25626	25627	53828	53828					0.05277456443241135
SPRDNSERNL	10	Unmodified	_SPRDNSERNL_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.29150390625	2	594.291808	1186.56906	0.15542	9.2367E-05	0.70431	0.00041857	0.85974	0.00051093	594.2919251936053	14.964	0.36531	14.964	14.789	15.154	0					21	12	2	0	0	0	0.38284	1	900	900		6.6304	3.3491	1	184560			44278	2100	25627	25628	53829	53829					-0.016759351411792522
SPRDNSERNL	10	Unmodified	_SPRDNSERNL_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2919311523438	2	594.291808	1186.56906	0.10748	6.3877E-05	0.35211	0.00020925	0.45959	0.00027313	594.2919799701713	15.153	0.3793	15.089	14.926	15.305	-0.064413					21	12	2	0	0	0	0.34887	1	955	955		12.873	6.6668	1	155370			44279	2100	25627	25628	53830	53830					-0.016759351411792522
SPRDNSERNL	10	Unmodified	_SPRDNSERNL_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	594.291808	1186.56906	0.23851	0.00014174	0.26508	0.00015754	0.50359	0.00029928	594.291852872682	15.103	0.46759	14.993	14.818	15.285	-0.10982	-0.022046	-8.2372E-05	NaN	12.873	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134290			44280	2100	25627	25628							-0.016759351411792522
SPRDPVLTL	9	Unmodified	_SPRDPVLTL_					0	0	0		ENST00000538591.5_1_12:133311987-133319805:-|nuORF;ENST00000439231.6_1_12:133310604-133318035:-|nuORF;nc|ENSG00000176915|Q86XL3-2|ANKLE2;ENSG00000176915|ENST00000357997|ANKLE2	ENST00000538591.5_1_12:133311987-133319805:-|nuORF	ENST00000538591.5_1_12:133311987-133319805:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.288818359375	2	499.287474	996.560395	0.63556	0.00031733	1.4422	0.00072005	2.0777	0.0010374	499.28799989855787	47.943	0.8614	47.943	47.745	48.606	0					65	30	3	0	0	0	0.017549	2	10920	10920;10981		67.838	14.005	1	4466900			44281	6949	25628	25629	53831;53832	53831					0.061977429602734446
SPRDPVLTL	9	Unmodified	_SPRDPVLTL_					0	0	0		ENST00000538591.5_1_12:133311987-133319805:-|nuORF;ENST00000439231.6_1_12:133310604-133318035:-|nuORF;nc|ENSG00000176915|Q86XL3-2|ANKLE2;ENSG00000176915|ENST00000357997|ANKLE2	ENST00000538591.5_1_12:133311987-133319805:-|nuORF	ENST00000538591.5_1_12:133311987-133319805:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2883605957031	2	499.287474	996.560395	0.76448	0.0003817	1.262	0.00063008	2.0265	0.0010118	499.28789416776453	47.905	0.99604	47.952	47.722	48.718	0.047523					79	36	3	0	0	0	0.032589	1	10906	10906		59.368	13.669	1	5453200			44282	6949	25628	25629	53833	53833					0.061977429602734446
SPRDPVLTL	9	Unmodified	_SPRDPVLTL_					0	0	0		ENST00000538591.5_1_12:133311987-133319805:-|nuORF;ENST00000439231.6_1_12:133310604-133318035:-|nuORF;nc|ENSG00000176915|Q86XL3-2|ANKLE2;ENSG00000176915|ENST00000357997|ANKLE2	ENST00000538591.5_1_12:133311987-133319805:-|nuORF	ENST00000538591.5_1_12:133311987-133319805:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.288330078125	2	499.287474	996.560395	0.56495	0.00028207	1.4404	0.00071917	2.0053	0.0010012	499.28798501069286	47.894	0.89367	47.937	47.72	48.614	0.04332					75	33	3	0	0	0	0.053988	3	10883	10883;10933;10971		51.415	5.7156	1	5211200			44283	6949	25628	25629	53834;53835;53836	53834					0.061977429602734446
SPRDSPAVSL	10	Unmodified	_SPRDSPAVSL_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;ENST00000562659.1_1_16:85698640-85699994:+|nuORF	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.772216796875	2	514.772188	1027.52982	0.12383	6.3745E-05	0.25074	0.00012908	0.37457	0.00019282	514.7721890741078	35.484	0.62954	35.484	35.2	35.83	0					41	22	4	0	0	0	0.19345	1	7112	7112		33.445	3.6043	1	696340			44284	3547	25629	25630	53837	53837					0.017159645752371944
SPRDSPAVSL	10	Unmodified	_SPRDSPAVSL_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;ENST00000562659.1_1_16:85698640-85699994:+|nuORF	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7722778320312	2	514.772188	1027.52982	0.0096412	4.963E-06	0.29649	0.00015263	0.30614	0.00015759	514.7721568283202	35.386	0.63216	35.461	35.21	35.842	0.075306					39	22	3	0	0	0	0.18128	1	7086	7086		34.932	5.0915	1	851750			44285	3547	25629	25630	53838	53838					0.017159645752371944
SPRDVPEEK	9	Unmodified	_SPRDVPEEK_					0	0	0		ENSG00000138380|ENST00000438828|CARF;nc|ENSG00000138380|Q8N187-3|CARF;nc|ENSG00000138380|Q8N187-2|CARF	ENSG00000138380|ENST00000438828|CARF	ENSG00000138380|ENST00000438828|CARF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2833862304688	2	528.769645	1055.52474	0.21466	0.00011351	0.75508	0.00039926	0.96974	0.00051277	528.7699336721463	16.451	0.51154	16.336	16.075	16.586	-0.11434					31	17	2	0	0	0	0.25612	1	1313	1313		8.1555	1.9497	1	57976			44286	4143	25630	25631	53839	53839					-0.0008033928738768736
SPREAARVL	9	Unmodified	_SPREAARVL_					0	0	0		nc|ENSG00000156521|Q2T9J0-2|TYSND1;ENSG00000156521|ENST00000287078|TYSND1	nc|ENSG00000156521|Q2T9J0-2|TYSND1	nc|ENSG00000156521|Q2T9J0-2|TYSND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7907409667969	2	499.790715	997.566878	0.25651	0.0001282	-0.056208	-2.8092E-05	0.2003	0.00010011	499.79067308624957	22.16	0.78606	22.16	21.922	22.708	0					55	27	3	0	0	0	0.073988	1	3050	3050		43.982	16.353	1	234760			44287	5242	25631	25632	53840	53840					0.06799680911649375
SPREAARVL	9	Unmodified	_SPREAARVL_					0	0	0		nc|ENSG00000156521|Q2T9J0-2|TYSND1;ENSG00000156521|ENST00000287078|TYSND1	nc|ENSG00000156521|Q2T9J0-2|TYSND1	nc|ENSG00000156521|Q2T9J0-2|TYSND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7908020019531	2	499.790715	997.566878	0.27394	0.00013691	-0.010402	-5.1986E-06	0.26354	0.00013172	499.7906678150833	22.204	0.77948	22.103	21.944	22.723	-0.10034					65	28	3	0	0	0	0.19083	1	3099	3099		24.991	7.8781	1	269650			44288	5242	25631	25632	53841	53841					0.06799680911649375
SPREAARVL	9	Unmodified	_SPREAARVL_					0	0	0		nc|ENSG00000156521|Q2T9J0-2|TYSND1;ENSG00000156521|ENST00000287078|TYSND1	nc|ENSG00000156521|Q2T9J0-2|TYSND1	nc|ENSG00000156521|Q2T9J0-2|TYSND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.790771484375	2	499.790715	997.566878	0.15389	7.6911E-05	0.06419	3.2081E-05	0.21808	0.00010899	499.7907178421046	22.22	0.96717	22.17	21.926	22.894	-0.049377					73	33	4	0	0	0	0.020233	1	3080	3080		63.961	16.212	1	212340			44289	5242	25631	25632	53842	53842					0.06799680911649375
SPREGEEL	8	Unmodified	_SPREGEEL_					0	0	0		nc|ENSG00000087460|O95467|GNAS	nc|ENSG00000087460|O95467|GNAS	nc|ENSG00000087460|O95467|GNAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7222900390625	2	458.722164	915.429775	0.042223	1.9369E-05	0.70184	0.00032195	0.74406	0.00034132	458.7224076261168	20.052	0.68834	20.052	19.768	20.456	0					49	25	3	0	0	0	0.16257	2	2401	2401;2451		49.554	13.427	1	319150			44290	12600	25632	25633	53843;53844	53843					-0.031322727585575194
SPREGEEL	8	Unmodified	_SPREGEEL_					0	0	0		nc|ENSG00000087460|O95467|GNAS	nc|ENSG00000087460|O95467|GNAS	nc|ENSG00000087460|O95467|GNAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7223205566406	2	458.722164	915.429775	0.26459	0.00012137	0.35	0.00016055	0.61459	0.00028193	458.72226239843695	20.265	0.79026	20.155	19.846	20.637	-0.11003					55	28	3	0	0	0	0.10249	2	2493	2443;2493		60.074	12.325	1	355820			44291	12600	25632	25633	53845;53846	53846					-0.031322727585575194
SPREGEEL	8	Unmodified	_SPREGEEL_					0	0	0		nc|ENSG00000087460|O95467|GNAS	nc|ENSG00000087460|O95467|GNAS	nc|ENSG00000087460|O95467|GNAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7224426269531	2	458.722164	915.429775	0.43	0.00019725	0.25781	0.00011826	0.68781	0.00031551	458.7222029352964	20.147	0.73415	20.091	19.816	20.55	-0.055693					48	26	3	0	0	0	0.080297	2	2464	2412;2464		63.961	16.216	1	382060			44292	12600	25632	25633	53847;53848	53848					-0.031322727585575194
SPREPRRTV	9	Unmodified	_SPREPRRTV_					0	0	0		ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7717895507812	2	549.312346	1096.61014	0.10402	5.7141E-05	-0.65173	-0.000358	-0.54771	-0.00030086	549.3121072669597	13.795	0.38973	13.69	13.513	13.903	-0.10466					30	13	3	0	0	0	0.25346	1	548	548		10.8	5.0677	1	137360			44293	473	25633	25634	53849	53849					0.06569870688940682
SPREPRRTV	9	Unmodified	_SPREPRRTV_					0	0	0		ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7719116210938	2	549.312346	1096.61014	0.090594	4.9764E-05	-0.52941	-0.00029081	-0.43881	-0.00024105	549.3121324708359	13.802	0.34186	13.736	13.575	13.917	-0.066067					25	11	4	0	0	0	0.25346	1	512	512		10.8	5.0677	1	145110			44294	473	25633	25634	53850	53850					0.06569870688940682
SPRFGAPVF	9	Unmodified	_SPRFGAPVF_					0	0	0		ENST00000502781.5_1_4:147096963-147097065:+|nuORF	ENST00000502781.5_1_4:147096963-147097065:+|nuORF	ENST00000502781.5_1_4:147096963-147097065:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7696533203125	2	489.263802	976.513051	0.20336	9.9499E-05	-1.1666	-0.00057078	-0.96325	-0.00047128	489.26311855960995	23.657	0.42333	23.584	23.368	23.791	-0.072559					25	14	2	0	0	0	0.25431	1	3452	3452		9.3831	1.473	1	124840			44295	11280	25634	25635	53851	53851					0.023855084799492943
SPRFGAPVF	9	Unmodified	_SPRFGAPVF_					0	0	0		ENST00000502781.5_1_4:147096963-147097065:+|nuORF	ENST00000502781.5_1_4:147096963-147097065:+|nuORF	ENST00000502781.5_1_4:147096963-147097065:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	489.263802	976.513051	0.13681	6.6936E-05	-1.0559	-0.00051663	-0.91913	-0.0004497	489.263080362403	23.523	0.52139	23.523	23.308	23.829	0	-0.062622	0.00016028	NaN	9.3831	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115980			44296	11280	25634	25635							0.023855084799492943
SPRFPAQYL	9	Unmodified	_SPRFPAQYL_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;ENST00000485349.5_1_6:31936258-31936911:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7877807617188	2	539.787641	1077.56073	0.5378	0.0002903	0.22695	0.00012251	0.76475	0.0004128	539.7875461488148	52.597	1.3936	52.597	52.123	53.516	0					142	50	4	0	0	0	0.008366	1	12443	12443		83.429	41.334	1	2626800			44297	8219	25635	25636	53852	53852					0.02505162680131434
SPRFPAQYL	9	Unmodified	_SPRFPAQYL_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;ENST00000485349.5_1_6:31936258-31936911:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7877197265625	2	539.787641	1077.56073	0.59788	0.00032273	0.22814	0.00012314	0.82602	0.00044587	539.7875846345636	52.521	1.3901	52.572	52.086	53.476	0.050575					133	50	3	0	0	0	0.0056456	1	12419	12419		93.166	53.209	1	2655500			44298	8219	25635	25636	53853	53853					0.02505162680131434
SPRFPAQYL	9	Unmodified	_SPRFPAQYL_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;ENST00000485349.5_1_6:31936258-31936911:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7879028320312	2	539.787641	1077.56073	0.50944	0.00027499	0.22483	0.00012136	0.73426	0.00039635	539.787548070332	52.699	1.5614	52.698	52.218	53.779	-0.00080872					149	57	3	0	0	0	0.053988	1	12538	12538		51.415	11.458	1	2733500			44299	8219	25635	25636	53854	53854					0.02505162680131434
SPRFPAQYLKL	11	Unmodified	_SPRFPAQYLKL_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;ENST00000485349.5_1_6:31936258-31936911:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.1820373535156	3	440.587195	1318.73976	0.1423	6.2697E-05	-0.14194	-6.2536E-05	0.0003654	1.6099E-07	440.58714712236855	55.498	0.66165	55.498	55.246	55.907	0					40	23	2	0	0	0	0.31141	1	13206	13206		12.929	10.494	1	181060			44300	8219	25636	25637	53855	53855					0.09313627248207013
SPRFPAQYLKL	11	Unmodified	_SPRFPAQYLKL_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;ENST00000485349.5_1_6:31936258-31936911:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.1818542480469	3	440.587195	1318.73976	0.31051	0.0001368	-0.25823	-0.00011377	0.052275	2.3032E-05	440.92152283017555	55.46	0.66381	55.531	55.164	55.828	0.070885					37	24	2	0	0	0	0.27495	1	13227	13227		32.518	23.274	1	273810			44301	8219	25636	25637	53856	53856					0.09313627248207013
SPRFVPKEL	9	Unmodified	_SPRFVPKEL_					0	0	0		ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.8106689453125	2	536.811116	1071.60768	0.58112	0.00031195	-0.97237	-0.00052198	-0.39125	-0.00021003	536.810590795702	37.333	0.62094	37.426	37.086	37.707	0.093018					36	22	2	0	0	0	0.1558	1	7654	7654		41.956	19.219	1	546370			44302	7097	25637	25638	53857	53857					0.07474022231281197
SPRFVPKEL	9	Unmodified	_SPRFVPKEL_					0	0	0		ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	536.811116	1071.60768	0.90788	0.00048736	-1.2698	-0.00068162	-0.36188	-0.00019426	536.8103698991657	37.413	0.49438	37.413	37.152	37.646	0	-0.0045096	-0.00024248	NaN	41.956	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	602660			44303	7097	25637	25638							0.07474022231281197
SPRGAGYL	8	Unmodified	_SPRGAGYL_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.8512268066406	2	410.719227	819.423902	-0.19925	-8.1835E-05	0.39444	0.000162	0.1952	8.017E-05	410.7193371693366	26.139	0.59867	26.139	25.9	26.499	0					50	20	3	0	0	0	0.34039	1	4306	4306		15.847	2.3393	1	204290			44304	4895	25638	25639	53858	53858					0.00696673520440072
SPRGAGYLF	9	Unmodified	_SPRGAGYLF_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2535095214844	2	484.253434	966.492316	0.33688	0.00016314	0.26631	0.00012896	0.6032	0.0002921	484.2534693656529	45.13	0.94927	45.13	44.771	45.72	0					105	34	4	0	0	0	0.04299	1	10033	10033		55.503	15.545	1	3529800			44305	4895	25639	25640	53859	53859					0.007729181002900987
SPRGAGYLF	9	Unmodified	_SPRGAGYLF_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2535705566406	2	484.253434	966.492316	0.33304	0.00016127	0.40488	0.00019606	0.73791	0.00035734	484.25354884472296	44.834	0.91495	44.903	44.599	45.514	0.068569					96	32	4	0	0	0	0.069366	1	9941	9941		45.7	5.7423	1	3798600			44306	4895	25639	25640	53860	53860					0.007729181002900987
SPRGAGYLF	9	Unmodified	_SPRGAGYLF_					0	0	0		ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENSG00000149923|ENST00000279387|PPP4C	ENSG00000149923|ENST00000279387|PPP4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.2535400390625	2	484.253434	966.492316	0.45984	0.00022268	0.31284	0.00015149	0.77267	0.00037417	484.25349330956817	44.765	1.1049	44.84	44.475	45.58	0.07505					116	40	4	0	0	0	0.047483	1	9928	9928		53.833	9.9745	1	3197800			44307	4895	25639	25640	53861	53861					0.007729181002900987
SPRGAGYTF	9	Unmodified	_SPRGAGYTF_					0	0	0		ENST00000523804.1_1_8:30651411-30651755:-|nuORF;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB	ENST00000523804.1_1_8:30651411-30651755:-|nuORF	ENST00000523804.1_1_8:30651411-30651755:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2350769042969	2	478.235242	954.45593	0.43921	0.00021005	-0.31723	-0.00015171	0.12198	5.8335E-05	478.23501916444457	32.339	0.62815	32.339	32.064	32.692	0					52	22	3	0	0	0	0.13748	1	6153	6153		32.786	2.5609	1	510100			44308	1907	25640	25641	53862	53862					-0.023119587964288257
SPRGAGYTF	9	Unmodified	_SPRGAGYTF_					0	0	0		ENST00000523804.1_1_8:30651411-30651755:-|nuORF;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB	ENST00000523804.1_1_8:30651411-30651755:-|nuORF	ENST00000523804.1_1_8:30651411-30651755:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2354431152344	2	478.235242	954.45593	0.58027	0.00027751	-0.43375	-0.00020744	0.14652	7.007E-05	478.2349975544575	32.242	0.63828	32.297	32.066	32.704	0.055309					50	22	3	0	0	0	0.037019	1	6143	6143		57.722	23.62	1	709440			44309	1907	25640	25641	53863	53863					-0.023119587964288257
SPRGAGYTF	9	Unmodified	_SPRGAGYTF_					0	0	0		ENST00000523804.1_1_8:30651411-30651755:-|nuORF;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB	ENST00000523804.1_1_8:30651411-30651755:-|nuORF	ENST00000523804.1_1_8:30651411-30651755:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2351379394531	2	478.235242	954.45593	0.2881	0.00013778	-0.20466	-9.7874E-05	0.083442	3.9905E-05	478.23508286570484	32.293	0.7207	32.348	32.045	32.765	0.054375					57	25	3	0	0	0	0.13748	1	6146	6146		32.786	5.902	1	500560			44310	1907	25640	25641	53864	53864					-0.023119587964288257
SPRGEAQKL	9	Unmodified	_SPRGEAQKL_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.6736755371094	2	493.274898	984.535243	0.17693	8.7276E-05	-1.4175	-0.00069919	-1.2405	-0.00061192	493.27423875874064	15.65	0.41112	15.541	15.312	15.723	-0.10981					33	13	4	0	0	0	0.26099	1	1097	1097		2.9952	0.69251	1	52344			44311	818	25641	25642	53865	53865					0.04235688157723416
SPRGEASSL	9	Unmodified	_SPRGEASSL_					0	0	0		ENSG00000015153|ENST00000534854|YAF2;ENST00000550315.1_1_12:42554393-42554687:-|nuORF;nc|ENSG00000015153|Q8IY57-3|YAF2;ENST00000547622.5_1_12:42554393-42631252:-|nuORF;nc|ENSG00000015153|Q8IY57-5|YAF2;ENST00000552109.5_1_12:42554393-42631425:-|nuORF	ENSG00000015153|ENST00000534854|YAF2;ENST00000552109.5_1_12:42554393-42631425:-|nuORF	ENSG00000015153|ENST00000534854|YAF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2301330566406	2	452.230156	902.445759	-0.038594	-1.7453E-05	0.095762	4.3307E-05	0.057169	2.5853E-05	452.23008118299487	19.145	1.1517	19.145	18.864	20.016	0					120	40	6	0	0	0	0.0032746	2	2146	2146;2186		100.09	33.634	1	1592200			44312	478;11808	25642	25643	53866;53867	53866					-0.009365665216591879
SPRGEASSL	9	Unmodified	_SPRGEASSL_					0	0	0		ENSG00000015153|ENST00000534854|YAF2;ENST00000550315.1_1_12:42554393-42554687:-|nuORF;nc|ENSG00000015153|Q8IY57-3|YAF2;ENST00000547622.5_1_12:42554393-42631252:-|nuORF;nc|ENSG00000015153|Q8IY57-5|YAF2;ENST00000552109.5_1_12:42554393-42631425:-|nuORF	ENSG00000015153|ENST00000534854|YAF2;ENST00000552109.5_1_12:42554393-42631425:-|nuORF	ENSG00000015153|ENST00000534854|YAF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2301025390625	2	452.230156	902.445759	0.057523	2.6013E-05	0.020545	9.2913E-06	0.078068	3.5305E-05	452.2300584478686	19.301	0.97768	19.185	18.891	19.869	-0.11592					110	33	6	0	0	0	0.010888	2	2206	2206;2260		78.06	14.1	1	1677800			44313	478;11808	25642	25643	53868;53869	53868					-0.009365665216591879
SPRGEASSL	9	Unmodified	_SPRGEASSL_					0	0	0		ENSG00000015153|ENST00000534854|YAF2;ENST00000550315.1_1_12:42554393-42554687:-|nuORF;nc|ENSG00000015153|Q8IY57-3|YAF2;ENST00000547622.5_1_12:42554393-42631252:-|nuORF;nc|ENSG00000015153|Q8IY57-5|YAF2;ENST00000552109.5_1_12:42554393-42631425:-|nuORF	ENSG00000015153|ENST00000534854|YAF2;ENST00000552109.5_1_12:42554393-42631425:-|nuORF	ENSG00000015153|ENST00000534854|YAF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2301025390625	2	452.230156	902.445759	0.067242	3.0409E-05	0.023422	1.0592E-05	0.090664	4.1001E-05	452.2300548557894	19.227	1.1309	19.171	18.903	20.034	-0.055693					124	39	6	0	0	0	0.013404	3	2175	2175;2214;2299		74.2	10.239	1	1600100			44314	478;11808	25642	25643	53870;53871;53872	53870					-0.009365665216591879
SPRGFPLGL	9	Unmodified	_SPRGFPLGL_					0	0	0		ENSG00000109171|ENST00000264313|SLAIN2	ENSG00000109171|ENST00000264313|SLAIN2	ENSG00000109171|ENST00000264313|SLAIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2718811035156	2	472.271627	942.528701	0.21524	0.00010165	0.39064	0.00018449	0.60588	0.00028614	472.27187695198046	57.739	0.84555	57.825	57.491	58.336	0.085621					86	30	4	0	0	0	0.019245	1	13908	13908		65.235	21.377	1	2645600			44315	2241	25643	25644	53873	53873					0.055137949969775946
SPRGFPLGL	9	Unmodified	_SPRGFPLGL_					0	0	0		ENSG00000109171|ENST00000264313|SLAIN2	ENSG00000109171|ENST00000264313|SLAIN2	ENSG00000109171|ENST00000264313|SLAIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.27191162109375	2	472.271627	942.528701	0.31461	0.00014858	0.38982	0.0001841	0.70443	0.00033268	472.271828556028	57.976	0.99854	57.959	57.606	58.605	-0.0172					94	36	4	0	0	0	0.063853	1	14076	14076		47.749	11.622	1	2403100			44316	2241	25643	25644	53874	53874					0.055137949969775946
SPRGFPLGL	9	Unmodified	_SPRGFPLGL_					0	0	0		ENSG00000109171|ENST00000264313|SLAIN2	ENSG00000109171|ENST00000264313|SLAIN2	ENSG00000109171|ENST00000264313|SLAIN2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	472.271627	942.528701	0.076772	3.6257E-05	0.59136	0.00027928	0.66813	0.00031554	472.2719540948518	57.893	1.1015	57.893	57.552	58.654	0	0.0010398	0.00010123	NaN	65.235	95	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2628500			44317	2241	25643	25644							0.055137949969775946
SPRGQAVL	8	Unmodified	_SPRGQAVL_					0	0	0			REV__ENST00000491061.1_1_7:151815642-151815978:+|nuORF	REV__ENST00000491061.1_1_7:151815642-151815978:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5503845214844	2	414.240327	826.466101	0.086724	3.5924E-05	-0.19886	-8.2376E-05	-0.11214	-4.6452E-05	414.2401477482627	23.026	0.53112	22.939	22.685	23.216	-0.087608					28	18	2	0	0	0	0.3433	1	3359	3359		6.2058	2.2614	1	43012	+		44318	18026	25644	25645	53875	53875					0.045926489288035555
SPRGSPDGSL	10	Unmodified	_SPRGSPDGSL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1;PELP1|p.P491Lfs*7|1|0.28|ENSG00000141456|chr17:4674620-4674620|G/-|frameshift_variant;ENST00000573523.5_1_17:4574736-4578861:-|nuORF	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7403869628906	2	486.740888	971.467223	0.31914	0.00015534	-0.64701	-0.00031492	-0.32786	-0.00015958	486.7404893432445	21.353	0.73738	21.353	21.026	21.763	0					58	25	3	0	0	0	0.24437	2	2794	2794;2848		27.223	8.8501	1	238540			44319	4382	25645	25646	53876;53877	53876					-0.01965181492960255
SPRGSPDGSL	10	Unmodified	_SPRGSPDGSL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1;PELP1|p.P491Lfs*7|1|0.28|ENSG00000141456|chr17:4674620-4674620|G/-|frameshift_variant;ENST00000573523.5_1_17:4574736-4578861:-|nuORF	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7403869628906	2	486.740888	971.467223	0.41447	0.00020174	-0.82157	-0.00039989	-0.4071	-0.00019815	486.74044075644383	21.456	0.58158	21.356	21.101	21.682	-0.10034					46	20	3	0	0	0	0.11062	1	2846	2846		45.74	10.808	1	315860			44320	4382	25645	25646	53878	53878					-0.01965181492960255
SPRGSPDGSL	10	Unmodified	_SPRGSPDGSL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1;PELP1|p.P491Lfs*7|1|0.28|ENSG00000141456|chr17:4674620-4674620|G/-|frameshift_variant;ENST00000573523.5_1_17:4574736-4578861:-|nuORF	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7403869628906	2	486.740888	971.467223	0.33467	0.0001629	-0.74358	-0.00036193	-0.40891	-0.00019903	486.74053805592104	21.43	0.78884	21.381	21.066	21.855	-0.049377					56	27	3	0	0	0	0.19345	2	2814	2814;2862		33.445	9.6551	1	263130			44321	4382	25645	25646	53879;53880	53879					-0.01965181492960255
SPRGTTSTL	9	Unmodified	_SPRGTTSTL_					0	0	0		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.245849609375	2	460.245806	918.47706	-0.10215	-4.7014E-05	0.1428	6.5722E-05	0.040649	1.8708E-05	460.24581315768756	18.194	0.97032	18.076	17.84	18.81	-0.11739					60	33	2	0	0	0	0.026579	1	1855	1855		61.602	0	1	800590			44322	6397	25646	25647	53881	53881					0.014560065124328503
SPRGTTSTL	9	Unmodified	_SPRGTTSTL_					0	0	0		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.24578857421875	2	460.245806	918.47706	-0.09435	-4.3424E-05	0.13756	6.3313E-05	0.043214	1.9889E-05	460.2458084808552	18.218	0.88591	18.16	17.902	18.788	-0.058174					79	31	4	0	0	0	0.032589	1	1856	1856		59.368	0	1	827280			44323	6397	25646	25647	53882	53882					0.014560065124328503
SPRGYFHTF	9	Unmodified	_SPRGYFHTF_					0	0	0		ENSG00000106299|ENST00000223023|WASL	ENSG00000106299|ENST00000223023|WASL	ENSG00000106299|ENST00000223023|WASL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2698974609375	2	556.269616	1110.52468	0.30395	0.00016908	-0.19489	-0.00010841	0.10906	6.0669E-05	556.2694889049338	38.096	0.75079	38.096	37.82	38.571	0					63	26	3	0	0	0	0.0098873	1	7925	7925		79.596	41.421	1	1292500			44324	2069	25647	25648	53883	53883					-0.026162944967154544
SPRGYFHTF	9	Unmodified	_SPRGYFHTF_					0	0	0		ENSG00000106299|ENST00000223023|WASL	ENSG00000106299|ENST00000223023|WASL	ENSG00000106299|ENST00000223023|WASL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2696533203125	2	556.269616	1110.52468	0.38417	0.0002137	-0.41418	-0.0002304	-0.030007	-1.6692E-05	556.2693319416194	38.001	0.7389	38.092	37.772	38.511	0.090881					59	26	3	0	0	0	0.0079761	1	7890	7890		82.529	44.354	1	1412700			44325	2069	25647	25648	53884	53884					-0.026162944967154544
SPRGYFHTF	9	Unmodified	_SPRGYFHTF_					0	0	0		ENSG00000106299|ENST00000223023|WASL	ENSG00000106299|ENST00000223023|WASL	ENSG00000106299|ENST00000223023|WASL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.26953125	2	556.269616	1110.52468	0.20867	0.00011607	-0.14348	-7.9815E-05	0.065183	3.626E-05	556.2694870040142	37.974	0.85429	38.071	37.768	38.622	0.097527					68	30	3	0	0	0	0.0079761	2	7844	7844;7891		82.529	44.354	1	1216800			44326	2069	25647	25648	53885;53886	53885					-0.026162944967154544
SPRIATTTA	9	Unmodified	_SPRIATTTA_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.2551574707031	2	459.256174	916.497795	0.14751	6.7744E-05	-1.1007	-0.00050549	-0.95316	-0.00043775	459.2555160058485	21.239	0.73102	21.239	20.973	21.704	0					64	25	4	0	0	0	0.04299	2	2777	2777;2828		55.503	15.545	1	430510			44327	4052;11723	25648	25649	53887;53888	53887					0.03620596892085359
SPRIATTTA	9	Unmodified	_SPRIATTTA_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2551574707031	2	459.256174	916.497795	0.272	0.00012492	-1.3627	-0.00062583	-1.0907	-0.00050091	459.2554790802796	21.39	0.95661	21.29	20.903	21.86	-0.10034					70	33	3	0	0	0	0.020233	2	2822	2822;2868		63.961	16.212	1	507080			44328	4052;11723	25648	25649	53889;53890	53889					0.03620596892085359
SPRIATTTA	9	Unmodified	_SPRIATTTA_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2552490234375	2	459.256174	916.497795	0.23041	0.00010582	-1.2185	-0.0005596	-0.98807	-0.00045378	459.2554793611437	21.308	0.76822	21.258	20.921	21.689	-0.049377					59	26	3	0	0	0	0.01909	2	2802	2802;2853		65.474	17.725	1	559520			44329	4052;11723	25648	25649	53891;53892	53891					0.03620596892085359
SPRINLRKVR	10	Unmodified	_SPRINLRKVR_					0	0	0		nc|ENSG00000172139|Q4G0N8-2|SLC9C1;ENSG00000172139|ENST00000305815|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2660827636719	3	413.598317	1237.77312	-0.21465	-8.8778E-05	-0.22291	-9.2197E-05	-0.43756	-0.00018097	413.59813824218236	12.726	0.35798	12.659	12.52	12.878	-0.067496					19	11	2	0	0	0	0.32174	1	234	234		0.15932	0	1	102180			44330	6604	25649	25650	53893	53893					0.16374673810764762
SPRINLRKVR	10	Unmodified	_SPRINLRKVR_					0	0	0		nc|ENSG00000172139|Q4G0N8-2|SLC9C1;ENSG00000172139|ENST00000305815|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	413.598317	1237.77312	-0.38283	-0.00015834	-0.015043	-6.2219E-06	-0.39787	-0.00016456	413.5982432623963	12.686	0.42759	12.686	12.498	12.925	0	0.034552	0.00030737	NaN	0.15932	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108080			44331	6604	25649	25650							0.16374673810764762
SPRINLRKVR	10	Unmodified	_SPRINLRKVR_					0	0	0		nc|ENSG00000172139|Q4G0N8-2|SLC9C1;ENSG00000172139|ENST00000305815|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	413.598317	1237.77312	-0.035345	-1.4619E-05	-0.44076	-0.0001823	-0.47611	-0.00019692	413.5981056778253	12.708	0.51779	12.609	12.407	12.924	-0.099291	-0.042037	-0.00022086	NaN	0.15932	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96818			44332	6604	25649	25650							0.16374673810764762
SPRIPPSQF	9	Unmodified	_SPRIPPSQF_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2;NCOA2|p.T530Yfs*39|1|0.04|ENSG00000140396|chr8:70156778-70156779|-/G|frameshift_variant	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7791748046875	2	514.779816	1027.54508	0.26982	0.0001389	-0.2567	-0.00013215	0.013119	6.7533E-06	514.7796836804552	40.346	2.3073	40.346	39.164	41.471	0					185	84	3	0	0	0	0.01909	2	8423	8375;8423		65.474	23.634	1	589320			44333	4299	25650	25651	53894;53895	53895					0.03240876163090434
SPRIPPSQF	9	Unmodified	_SPRIPPSQF_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2;NCOA2|p.T530Yfs*39|1|0.04|ENSG00000140396|chr8:70156778-70156779|-/G|frameshift_variant	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7797241210938	2	514.779816	1027.54508	0.32139	0.00016544	-0.35782	-0.0001842	-0.036429	-1.8753E-05	514.7796165812924	40.509	2.5676	40.601	38.974	41.541	0.09267					181	93	2	0	0	0	0.038291	1	8371	8371		57.249	15.409	1	671260			44334	4299	25650	25651	53896	53896					0.03240876163090434
SPRIPPSQF	9	Unmodified	_SPRIPPSQF_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2;NCOA2|p.T530Yfs*39|1|0.04|ENSG00000140396|chr8:70156778-70156779|-/G|frameshift_variant	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7797241210938	2	514.779816	1027.54508	0.21169	0.00010897	-0.31491	-0.00016211	-0.10323	-5.3139E-05	514.7795867599991	40.268	2.7233	40.367	38.784	41.508	0.099403					179	98	2	0	0	0	0.068498	1	8340	8340		46.022	11.621	1	635030			44335	4299	25650	25651	53897	53897					0.03240876163090434
SPRIYSNSL	9	Unmodified	_SPRIYSNSL_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.7750854492188	2	518.774731	1035.53491	0.50998	0.00026456	0.79785	0.0004139	1.3078	0.00067847	518.7750586420556	35.909	0.62099	35.909	35.635	36.256	0					56	22	3	0	0	0	0.00082904	1	7225	7225		124.95	73.323	1	1017100			44336	6771	25651	25652	53898	53898					0.018562684378593985
SPRIYSNSL	9	Unmodified	_SPRIYSNSL_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7750854492188	2	518.774731	1035.53491	0.42531	0.00022064	0.75532	0.00039184	1.1806	0.00061248	518.7750685875059	35.769	0.63579	35.851	35.598	36.233	0.082355					58	22	4	0	0	0	8.0996E-05	2	7188	7188;7236		143.91	78.674	1	1022000			44337	6771	25651	25652	53899;53900	53899					0.018562684378593985
SPRIYSNSL	9	Unmodified	_SPRIYSNSL_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7752685546875	2	518.774731	1035.53491	0.37047	0.00019219	0.95065	0.00049317	1.3211	0.00068536	518.7751784182245	35.769	0.59959	35.855	35.62	36.22	0.08625					54	21	3	0	0	0	0.00013073	1	7179	7179		135.86	82.031	1	1071200			44338	6771	25651	25652	53901	53901					0.018562684378593985
SPRKDGLVSL	10	Unmodified	_SPRKDGLVSL_					0	0	0		ENST00000592494.1_1_17:73759392-73761232:-|nuORF;GALK1|p.S254Afs*10|1|0.48|ENSG00000108479|chr17:75762737-75762737|T/-|frameshift_variant;ENSG00000108479|ENST00000588479|GALK1;ENST00000589030.1_1_17:73759945-73761208:-|nuORF	ENST00000592494.1_1_17:73759392-73761232:-|nuORF	ENST00000592494.1_1_17:73759392-73761232:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.3113403320312	2	536.31148	1070.60841	0.53686	0.00028793	-0.50116	-0.00026878	0.035705	1.9149E-05	536.3113156728796	31.913	0.67124	31.955	31.737	32.408	0.042366					40	23	2	0	0	0	0.049822	1	6026	6026		59.052	13.313	1	564290			44339	2188	25652	25653	53902	53902					0.07592816880332975
SPRKDGLVSL	10	Unmodified	_SPRKDGLVSL_					0	0	0		ENST00000592494.1_1_17:73759392-73761232:-|nuORF;GALK1|p.S254Afs*10|1|0.48|ENSG00000108479|chr17:75762737-75762737|T/-|frameshift_variant;ENSG00000108479|ENST00000588479|GALK1;ENST00000589030.1_1_17:73759945-73761208:-|nuORF	ENST00000592494.1_1_17:73759392-73761232:-|nuORF	ENST00000592494.1_1_17:73759392-73761232:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.3117065429688	2	536.31148	1070.60841	0.51536	0.00027639	-0.46672	-0.00025031	0.048641	2.6087E-05	536.3113291111662	31.931	0.73351	31.972	31.722	32.456	0.040991					53	25	3	0	0	0	0.016475	1	6027	6027		75.571	24.155	1	760760			44340	2188	25652	25653	53903	53903					0.07592816880332975
SPRKGLLML	9	Oxidation (M)	_SPRKGLLM(Oxidation (M))L_		SPRKGLLM(1)L		SPRKGLLM(70)L	0	0	1		ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.807861328125	2	515.807519	1029.60049	0.44847	0.00023133	0.19623	0.00010121	0.6447	0.00033254	515.8075301182203	36.088	0.78092	36.088	35.604	36.385	0					70	28	3	0	0	0	0.015924	1	7303	7303		70.332	16.499	1	897650			44341	4245	25653	25654	53904	53904		542			0.08686966359209691
SPRKGWSFM	9	Oxidation (M)	_SPRKGWSFM(Oxidation (M))_		SPRKGWSFM(1)		SPRKGWSFM(73)	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2713012695312	2	556.271301	1110.52805	0.42556	0.00023673	-0.54804	-0.00030486	-0.12248	-6.813E-05	556.2709696466953	30.043	1.3673	30.043	29.551	30.918	0					110	48	4	0	0	0	0.014058	1	5424	5424		73.196	37.069	1	1004800			44342	5048	25654	25655	53905	53905		621			-0.022793677143681634
SPRKGWSFM	9	Oxidation (M)	_SPRKGWSFM(Oxidation (M))_		SPRKGWSFM(1)		SPRKGWSFM(85)	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.27099609375	2	556.271301	1110.52805	0.37936	0.00021103	-0.52879	-0.00029415	-0.14943	-8.3122E-05	556.2709607225455	30.032	1.4051	30.045	29.389	30.794	0.012871					100	48	3	0	0	0	0.0066776	2	5467	5417;5467		84.522	55.441	1	972420			44343	5048	25654	25655	53906;53907	53907		621			-0.022793677143681634
SPRKGWSFM	9	Oxidation (M)	_SPRKGWSFM(Oxidation (M))_		SPRKGWSFM(1)		SPRKGWSFM(87)	0	0	1		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2709350585938	2	556.271301	1110.52805	-0.030039	-1.671E-05	-0.16915	-9.4094E-05	-0.19919	-0.0001108	556.2712295155226	30.034	1.2983	30.061	29.435	30.733	0.027157					105	44	4	0	0	0	0.0048951	3	5471	5381;5427;5471		87.258	56.622	1	986670			44344	5048	25654	25655	53908;53909;53910	53910		621			-0.022793677143681634
SPRKKRPRQT	10	Unmodified	_SPRKKRPRQT_					0	0	0		nc|ENSG00000107447|P04053-2|DNTT;ENSG00000107447|ENST00000371174|DNTT	nc|ENSG00000107447|P04053-2|DNTT	nc|ENSG00000107447|P04053-2|DNTT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.8894653320312	2	627.381094	1252.74764	-0.13687	-8.5872E-05	2.3589	0.0014799	2.222	0.0013941	627.3830916803965	104.43	0.28944	104.43	104.39	104.68	0.0018463					60	41	4	0	0	0	0.32132	1	27738	27738		1.4819	1.4819	1	269770			44345	2127	25655	25656	53911	53911					0.13137199288371448
SPRKKRPRQT	10	Unmodified	_SPRKKRPRQT_					0	0	0		nc|ENSG00000107447|P04053-2|DNTT;ENSG00000107447|ENST00000371174|DNTT	nc|ENSG00000107447|P04053-2|DNTT	nc|ENSG00000107447|P04053-2|DNTT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.3809814453125	2	627.381094	1252.74764	0.16814	0.00010549	1.0046	0.00063025	1.1727	0.00073573	627.3814718290594	103.16	0.78476	103.16	102.83	103.62	-0.0011063					293	111	4	0	0	0	0.38773	5	27450	27450;27472;27479;27513;27525		5.7319	2.7366	1	32106000			44346	2127	25655	25656	53912;53913;53914;53915;53916	53912					0.13137199288371448
SPRKKRPRQT	10	Unmodified	_SPRKKRPRQT_					0	0	0		nc|ENSG00000107447|P04053-2|DNTT;ENSG00000107447|ENST00000371174|DNTT	nc|ENSG00000107447|P04053-2|DNTT	nc|ENSG00000107447|P04053-2|DNTT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.3809814453125	2	627.381094	1252.74764	0.16944	0.00010631	0.77217	0.00048445	0.94162	0.00059075	627.3813308128422	103.75	1.1892	103.75	103.52	104.71	-0.0011139					513	166	4	0	0	0	0.38773	6	27586	27586;27612;27633;27680;27725;27728		5.7319	2.9967	1	31067000			44347	2127	25655	25656	53917;53918;53919;53920;53921;53922	53917					0.13137199288371448
SPRKLPTSL	9	Unmodified	_SPRKLPTSL_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8034973144531	2	499.803291	997.59203	0.56889	0.00028433	-0.087733	-4.3849E-05	0.48115	0.00024048	499.803147496071	29.241	1.0215	29.241	28.924	29.945	0					75	36	3	0	0	0	0.016571	1	5182	5182		69.338	9.9698	1	1042400			44348	412	25656	25657	53923	53923					0.09313735714226823
SPRKLPTSL	9	Unmodified	_SPRKLPTSL_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.80340576171875	2	499.803291	997.59203	0.38111	0.00019048	0.16993	8.4932E-05	0.55104	0.00027541	499.80322691355474	29.216	0.88861	29.228	28.915	29.803	0.012266					70	30	3	0	0	0	0.048637	1	5166	5166		53.404	13.454	1	1088800			44349	412	25656	25657	53924	53924					0.09313735714226823
SPRKLPTSL	9	Unmodified	_SPRKLPTSL_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.8034973144531	2	499.803291	997.59203	0.18974	9.4833E-05	0.25197	0.00012594	0.44171	0.00022077	499.80331218908674	29.274	0.83818	29.287	28.907	29.745	0.013474					56	29	2	0	0	0	0.0058682	2	5222	5176;5222		85.764	26.396	1	1171500			44350	412	25656	25657	53925;53926	53926					0.09313735714226823
SPRKNQIVF	9	Unmodified	_SPRKNQIVF_					0	0	0		nc|ENSG00000154380|Q8N8S7|ENAH	nc|ENSG00000154380|Q8N8S7|ENAH	nc|ENSG00000154380|Q8N8S7|ENAH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.741455078125	2	544.81419	1087.61383	0.37785	0.00020586	0.49127	0.00026765	0.86912	0.00047351	544.8141818072525	27.446	0.46204	27.435	27.213	27.675	-0.01156					25	15	2	0	0	0	0.23749	1	4637	4637		15.248	0	1	204010			44351	12767	25657	25658	53927	53927					0.07352540462807156
SPRKPIDSL	9	Unmodified	_SPRKPIDSL_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.79229736328125	2	506.792924	1011.57129	0.29034	0.00014714	-0.54476	-0.00027608	-0.25443	-0.00012894	506.79254605368345	24.859	0.69173	24.859	24.575	25.267	0					41	23	2	0	0	0	0.15763	1	3849	3849		29.841	2.2118	1	475210			44352	6227	25658	25659	53928	53928					0.06597145334569632
SPRKPIDSL	9	Unmodified	_SPRKPIDSL_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7927551269531	2	506.792924	1011.57129	0.17217	8.7257E-05	-0.033983	-1.7223E-05	0.13819	7.0034E-05	506.79265500231395	24.937	0.74041	24.881	24.6	25.341	-0.055931					59	25	4	0	0	0	0.043711	2	3893	3893;3939		55.235	14.995	1	496000			44353	6227	25658	25659	53929;53930	53929					0.06597145334569632
SPRKPIDSL	9	Unmodified	_SPRKPIDSL_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.79278564453125	2	506.792924	1011.57129	-0.034631	-1.7551E-05	-0.22427	-0.00011366	-0.2589	-0.00013121	506.7927419365075	24.899	0.72348	24.868	24.571	25.294	-0.031408					46	24	2	0	0	0	0.058995	2	3868	3868;3937		49.554	13.427	1	453670			44354	6227	25658	25659	53931;53932	53931					0.06597145334569632
SPRKPPLFL	9	Unmodified	_SPRKPPLFL_					0	0	0		nc|ENSG00000182010|Q8IZC4-2|RTKN2;ENSG00000182010|ENST00000373789|RTKN2	nc|ENSG00000182010|Q8IZC4-2|RTKN2	nc|ENSG00000182010|Q8IZC4-2|RTKN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7638549804688	2	527.824027	1053.6335	0.23533	0.00012421	0.11771	6.2132E-05	0.35304	0.00018634	527.8239181518258	42.571	0.56529	42.571	42.277	42.842	0					30	20	2	0	0	0	0.24289	1	9254	9254		18.146	3.5647	1	190730			44355	7263	25659	25660	53933	53933					0.10882916473542537
SPRKPPLFL	9	Unmodified	_SPRKPPLFL_					0	0	0		nc|ENSG00000182010|Q8IZC4-2|RTKN2;ENSG00000182010|ENST00000373789|RTKN2	nc|ENSG00000182010|Q8IZC4-2|RTKN2	nc|ENSG00000182010|Q8IZC4-2|RTKN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7639770507812	2	527.824027	1053.6335	0.41615	0.00021966	-0.38956	-0.00020562	0.026594	1.4037E-05	527.8236899117019	42.294	0.52301	42.379	42.153	42.676	0.085197					31	18	2	0	0	0	0.22674	1	9176	9176		22.736	8.1546	1	195780			44356	7263	25659	25660	53934	53934					0.10882916473542537
SPRKTAQDTL	10	Unmodified	_SPRKTAQDTL_					0	0	0		nc|ENSG00000172575|O95267-2|RASGRP1;ENSG00000172575|ENST00000310803|RASGRP1	nc|ENSG00000172575|O95267-2|RASGRP1	nc|ENSG00000172575|O95267-2|RASGRP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.8043823242188	2	558.80402	1115.59349	0.22694	0.00012681	0.72228	0.00040361	0.94922	0.00053043	558.8047011695382	16.546	0.54652	16.483	16.235	16.782	-0.062534					43	18	3	0	0	0	0.30504	1	1347	1347		21.59	8.5477	1	146870			44357	6649	25660	25661	53935	53935					0.04031325012351772
SPRLMSNAL	9	Oxidation (M)	_SPRLM(Oxidation (M))SNAL_		SPRLM(1)SNAL		SPRLM(120)SNAL	0	0	1		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.763427734375	2	502.763309	1003.51206	0.35279	0.00017737	-0.0040987	-2.0607E-06	0.34869	0.00017531	502.76333647231	30.638	1.2815	30.638	30.194	31.476	0					99	45	4	0	0	0	0.00082904	3	5640	5588;5640;5700		124.95	60.993	1	1804100			44358	4044	25661	25662	53936;53937;53938	53937		511			0.01044926048734851
SPRLMSNAL	9	Oxidation (M)	_SPRLM(Oxidation (M))SNAL_		SPRLM(1)SNAL		SPRLM(140)SNAL	0	0	1		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7633972167969	2	502.763309	1003.51206	0.32258	0.00016218	-0.054817	-2.756E-05	0.26776	0.00013462	502.7633256089721	30.647	1.1484	30.675	30.324	31.473	0.027946					89	40	4	0	0	0	0.00010651	2	5636	5636;5684		139.78	69.45	1	1879600			44359	4044	25661	25662	53939;53940	53939		511			0.01044926048734851
SPRLMSNAL	9	Oxidation (M)	_SPRLM(Oxidation (M))SNAL_		SPRLM(1)SNAL		SPRLM(98)SNAL	0	0	1		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.763427734375	2	502.763309	1003.51206	0.11804	5.9344E-05	0.22876	0.00011501	0.34679	0.00017435	502.7634112306135	30.627	1.011	30.654	30.309	31.32	0.027157					85	36	4	0	0	0	0.0035713	2	5623	5623;5669		97.741	48.187	1	1867500			44360	4044	25661	25662	53941;53942	53941		511			0.01044926048734851
SPRLPVGGF	9	Unmodified	_SPRLPVGGF_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2640380859375	2	465.263802	928.513051	0.2373	0.00011041	-0.061865	-2.8783E-05	0.17543	8.1623E-05	465.26390401000475	51.046	1.6998	51.046	50.654	52.354	0					180	62	4	0	0	0	0.0019475	3	11906	11815;11857;11906		110.67	68.835	1	20262000			44361	5089	25662	25663	53943;53944;53945	53945					0.045935084799680226
SPRLPVGGF	9	Unmodified	_SPRLPVGGF_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2640075683594	2	465.263802	928.513051	0.13884	6.4599E-05	-0.0035454	-1.6496E-06	0.1353	6.295E-05	465.2639334760717	51.026	1.6219	51.073	50.684	52.305	0.046574					162	59	4	0	0	0	0.0010463	3	11856	11808;11856;11903		122.18	72.246	1	20434000			44362	5089	25662	25663	53946;53947;53948	53947					0.045935084799680226
SPRLPVGGF	9	Unmodified	_SPRLPVGGF_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2640075683594	2	465.263802	928.513051	0.38236	0.0001779	-0.15858	-7.3779E-05	0.22379	0.00010412	465.2638552984029	51.111	1.7756	51.12	50.675	52.451	0.0095634					165	66	4	0	0	0	0.0010463	3	11859	11816;11859;11907		122.18	72.246	1	20366000			44363	5089	25662	25663	53949;53950;53951	53950					0.045935084799680226
SPRLSAVL	8	Unmodified	_SPRLSAVL_					0	0	0			REV__ENST00000554429.5_1_14:45565874-45579180:+|nuORF	REV__ENST00000554429.5_1_14:45565874-45579180:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2683410644531	2	421.758352	841.502152	0.21198	8.9404E-05	-0.17106	-7.2147E-05	0.040916	1.7257E-05	421.7581903168324	36.944	0.58916	36.944	36.644	37.233	0					42	20	3	0	0	0	0.28969	1	7614	7614		28.487	0	1	399310	+		44364	22233	25663	25664	53952	53952					0.07506106105654453
SPRLSLLYL	9	Unmodified	_SPRLSLLYL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3218383789062	2	531.321317	1060.62808	0.57626	0.00030618	0.16613	8.8271E-05	0.74239	0.00039445	531.3213542545396	68.778	1.2648	68.778	68.408	69.673	0					106	45	4	0	0	0	0.07944	1	17326	17326		41.956	5.8285	1	3348700			44365	1834	25664	25665	53953	53953					0.1001919289108173
SPRLSLLYL	9	Unmodified	_SPRLSLLYL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3215942382812	2	531.321317	1060.62808	0.43634	0.00023184	0.33129	0.00017602	0.76763	0.00040786	531.3213962031247	68.763	1.0086	68.835	68.484	69.493	0.071938					99	36	4	0	0	0	0.04299	2	17340	17297;17340		55.503	17.327	1	3176300			44366	1834	25664	25665	53954;53955	53955					0.1001919289108173
SPRLSLLYL	9	Unmodified	_SPRLSLLYL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3216552734375	2	531.321317	1060.62808	0.50694	0.00026935	0.28865	0.00015336	0.79559	0.00042271	531.3213783593493	68.838	1.2412	68.819	68.516	69.758	-0.01915					106	44	4	0	0	0	0.020233	1	17357	17357		63.961	18.261	1	2961500			44367	1834	25664	25665	53956	53956					0.1001919289108173
SPRLSQTFL	9	Unmodified	_SPRLSQTFL_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000520450.5_1_5:169484535-169509859:+|nuORF;ENST00000519868.1_1_5:169508643-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7932739257812	2	524.792924	1047.57129	0.68183	0.00035782	0.35117	0.00018429	1.033	0.00054211	524.7930563803983	48.702	0.87769	48.747	48.416	49.293	0.044888					52	31	2	0	0	0	0.018042	3	11161	11161;11213;11224		67.081	26.842	1	2892800			44368	3792	25665	25666	53957;53958;53959	53957					0.049411453345555856
SPRLSQTFL	9	Unmodified	_SPRLSQTFL_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000520450.5_1_5:169484535-169509859:+|nuORF;ENST00000519868.1_1_5:169508643-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7935180664062	2	524.792924	1047.57129	0.55727	0.00029245	0.57938	0.00030405	1.1367	0.00059651	524.7931418487746	48.63	0.7928	48.662	48.387	49.18	0.032043					50	28	2	0	0	0	0.043711	4	11134	11113;11134;11193;11198		55.235	25.394	1	2715300			44369	3792	25665	25666	53960;53961;53962;53963	53961					0.049411453345555856
SPRLSQTFLQL	11	Unmodified	_SPRLSQTFLQL_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000520450.5_1_5:169484535-169509859:+|nuORF;ENST00000519868.1_1_5:169508643-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	645.866943359375	2	645.364244	1288.71394	0.55706	0.00035951	0.16109	0.00010396	0.71815	0.00046347	645.3643035224104	63.994	0.56932	64.087	63.765	64.334	0.092884					47	20	4	0	0	0	0.036299	1	15830	15830		57.204	18.589	1	538820			44370	3792	25666	25667	53964	53964					0.08112733005941664
SPRLSQTFLQL	11	Unmodified	_SPRLSQTFLQL_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000520450.5_1_5:169484535-169509859:+|nuORF;ENST00000519868.1_1_5:169508643-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	645.3643188476562	2	645.364244	1288.71394	0.61909	0.00039954	-0.054902	-3.5432E-05	0.56419	0.00036411	645.364156666695	64.017	0.48773	64.007	63.851	64.339	-0.0095291					47	17	4	0	0	0	0.0087692	2	15881	15881;15932		72.276	26.536	1	573390			44371	3792	25666	25667	53965;53966	53965					0.08112733005941664
SPRMPSSGF	9	Oxidation (M)	_SPRM(Oxidation (M))PSSGF_		SPRM(1)PSSGF		SPRM(83)PSSGF	0	0	1		ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2266540527344	2	491.226559	980.438566	0.22292	0.0001095	0.0087847	4.3153E-06	0.23171	0.00011382	491.226533789752	23.793	1.2405	23.793	23.308	24.548	0					109	42	4	0	0	0	0.0073901	3	3556	3556;3600;3652		83.429	45.455	1	341590			44372	5987	25667	25668	53967;53968;53969	53967		704			-0.052436223937206705
SPRMPSSGF	9	Oxidation (M)	_SPRM(Oxidation (M))PSSGF_		SPRM(1)PSSGF		SPRM(70)PSSGF	0	0	1		ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.22662353515625	2	491.226559	980.438566	0.30543	0.00015003	-0.014289	-7.0193E-06	0.29114	0.00014302	491.2264894956993	23.919	1.1895	23.846	23.422	24.612	-0.072557					108	40	4	0	0	0	0.015924	3	3698	3599;3650;3698		70.332	39.695	1	254930			44373	5987	25667	25668	53970;53971;53972	53972		704			-0.052436223937206705
SPRMPSSGF	9	Oxidation (M)	_SPRM(Oxidation (M))PSSGF_		SPRM(1)PSSGF		SPRM(83)PSSGF	0	0	1		ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2266540527344	2	491.226559	980.438566	0.39519	0.00019413	-0.15874	-7.7979E-05	0.23644	0.00011615	491.22646288631165	23.935	1.0015	23.896	23.476	24.478	-0.038927					87	34	4	0	0	0	0.0073901	2	3590	3590;3642		83.429	45.455	1	312300			44374	5987	25667	25668	53973;53974	53973		704			-0.052436223937206705
SPRMPSSGF	9	Oxidation (M)	_SPRM(Oxidation (M))PSSGF_		SPRM(1)PSSGF		SPRM(74)PSSGF	0	0	1		ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.22662353515625	2	491.226559	980.438566	0.24409	0.0001199	0.13233	6.5002E-05	0.37642	0.00018491	491.226593850231	24.295	0.45491	24.256	24.108	24.563	-0.038927					29	15	2	0	0	0	0.052436	1	3695	3695		74.2	38.073	1	255860			44375	5987	25667	25668	53975	53975		704			-0.052436223937206705
SPRMPSSGF	9	Oxidation (M)	_SPRM(Oxidation (M))PSSGF_					0	0	1		ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	491.226559	980.438566	0.3081	0.00015135	-0.46423	-0.00022804	-0.15612	-7.6692E-05	491.22639595783266	24.646	0.098064	24.646	24.575	24.673	0	0.1947	-0.00055618	NaN	74.2	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18257			44376	5987	25667	25668				704			-0.052436223937206705
SPRNMGGPL	9	Unmodified	_SPRNMGGPL_					0	0	0			REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.25616455078125	2	464.737094	927.459635	-0.25597	-0.00011896	0.27794	0.00012917	0.021971	1.0211E-05	464.73713069348855	25.664	0.93353	25.612	25.369	26.302	-0.052555					47	32	3	0	0	0	0.25706	1	4315	4315		6.7232	0	1	365940	+		44377	22671	25668	25669	53976	53976					-0.006996122942041438
SPRNMGGPL	9	Unmodified	_SPRNMGGPL_					0	0	0			REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	464.737094	927.459635	-0.17584	-8.1719E-05	0.27414	0.0001274	0.098303	4.5685E-05	464.73714147419435	25.638	0.88682	25.638	25.384	26.271	0	0.00063015	3.2764E-05	NaN	6.7232	58	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372240	+		44378	22671	25668	25669							-0.006996122942041438
SPRNMGGPL	9	Unmodified	_SPRNMGGPL_					0	0	0			REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	REV__ENST00000609439.2_2_7:45847154-45848297:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	464.737094	927.459635	-0.029227	-1.3583E-05	0.12201	5.6702E-05	0.092783	4.312E-05	464.73713233075864	25.686	0.85437	25.663	25.444	26.298	-0.022238	0.025628	-0.00010864	NaN	6.7232	42	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355900	+		44379	22671	25668	25669							-0.006996122942041438
SPRNNALK	8	Unmodified	_SPRNNALK_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7102355957031	2	450.256508	898.498464	0.021763	9.799E-06	0.92108	0.00041472	0.94285	0.00042452	450.2566652809479	22.605	0.66171	22.56	22.156	22.817	-0.044867					32	22	2	0	0	0	0.34247	1	3108	3108		8.5933	1.304	1	62317			44380	12750	25669	25670	53977	53977					0.04515436331791989
SPRPALPALLV	11	Unmodified	_SPRPALPALLV_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2796630859375	2	567.355691	1132.69683	0.075102	4.261E-05	0.46782	0.00026542	0.54292	0.00030803	567.3557391448293	65.298	0.4301	65.286	65.074	65.504	-0.011337					24	15	2	0	0	0	0.32697	1	16279	16279		13.615	1.3742	1	142690			44381	1374	25670	25671	53978	53978					0.135788571907824
SPRPAPLLL	9	Unmodified	_SPRPAPLLL_					0	0	0		ENSG00000242110|ENST00000335606|AMACR;nc|ENSG00000242110|Q9UHK6-5|AMACR	ENSG00000242110|ENST00000335606|AMACR	ENSG00000242110|ENST00000335606|AMACR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.3031005859375	2	482.302927	962.591301	0.70796	0.00034145	0.13036	6.2874E-05	0.83832	0.00040432	482.30286207280335	50.804	0.69268	50.813	50.402	51.094	0.0095634					78	25	4	0	0	0	0.13748	1	11760	11760		32.786	0	1	2573400			44382	8540	25671	25672	53979	53979					0.10850941065177722
SPRPESPYLEP	11	Unmodified	_SPRPESPYLEP_					0	0	0			REV__ENST00000489467.1_1_3:16254210-16261548:+|nuORF	REV__ENST00000489467.1_1_3:16254210-16261548:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.3159790039062	2	636.31696	1270.61937	0.30822	0.00019613	-4.4419	-0.0028265	-4.1337	-0.0026303	636.3158290995943	17.085	0.14519	17.085	17.041	17.186	0					6	4	2	0	0	0	0.47825	1	1537	1537		0.96228	0.43751	1	22268	+		44383	15509	25672	25673	53980	53980					-0.0051182553602302505
SPRPKMDAI	9	Oxidation (M)	_SPRPKM(Oxidation (M))DAI_		SPRPKM(1)DAI		SPRPKM(48)DAI	0	0	1		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7719116210938	2	515.771134	1029.52771	0.057002	2.94E-05	0.7057	0.00036398	0.7627	0.00039338	515.7715313361124	16.589	0.64873	16.475	16.047	16.695	-0.11434					41	15	4	0	0	0	0.064268	1	1361	1361		47.594	21.326	1	329470			44384	3322	25673	25674	53981	53981		422			0.014132125657624783
SPRPKMDAI	9	Oxidation (M)	_SPRPKM(Oxidation (M))DAI_		SPRPKM(1)DAI		SPRPKM(56)DAI	0	0	1		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.7716674804688	2	515.771134	1029.52771	0.1799	9.279E-05	-0.68235	-0.00035193	-0.50244	-0.00025914	515.7703101535203	16.51	0.90319	16.448	16.066	16.969	-0.062534					65	30	4	0	0	0	0.04299	1	1337	1337		55.503	24.866	1	358710			44385	3322	25673	25674	53982	53982		422			0.014132125657624783
SPRPPAEGF	9	Unmodified	_SPRPPAEGF_					0	0	0		ENSG00000156858|ENST00000300835|PRR14;ENST00000564946.5_1_16:30664247-30666731:+|nuORF	ENSG00000156858|ENST00000300835|PRR14	ENSG00000156858|ENST00000300835|PRR14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2427673339844	2	479.243067	956.47158	0.10043	4.8131E-05	-0.76452	-0.00036639	-0.66409	-0.00031826	479.2430211724609	33.039	1.0109	33.039	32.415	33.426	0					97	35	5	0	0	0	0.048637	2	6348	6348;6396		53.404	3.8227	1	517600			44386	5259	25674	25675	53983;53984	53983					-0.008396722793804656
SPRPPAEGF	9	Unmodified	_SPRPPAEGF_					0	0	0		ENSG00000156858|ENST00000300835|PRR14;ENST00000564946.5_1_16:30664247-30666731:+|nuORF	ENSG00000156858|ENST00000300835|PRR14	ENSG00000156858|ENST00000300835|PRR14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2431945800781	2	479.243067	956.47158	0.22353	0.00010712	-0.68355	-0.00032759	-0.46002	-0.00022046	479.24298069875476	32.905	0.88778	32.96	32.506	33.394	0.055309					84	31	4	0	0	0	0.037019	2	6303	6303;6354		57.722	9.9733	1	596970			44387	5259	25674	25675	53985;53986	53985					-0.008396722793804656
SPRPPAEGF	9	Unmodified	_SPRPPAEGF_					0	0	0		ENSG00000156858|ENST00000300835|PRR14;ENST00000564946.5_1_16:30664247-30666731:+|nuORF	ENSG00000156858|ENST00000300835|PRR14	ENSG00000156858|ENST00000300835|PRR14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2430419921875	2	479.243067	956.47158	0.21934	0.00010512	-0.77608	-0.00037193	-0.55674	-0.00026681	479.24295645222077	32.912	0.74687	32.966	32.682	33.429	0.054371					75	26	4	0	0	0	0.047483	2	6343	6294;6343		53.833	6.0841	1	561190			44388	5259	25674	25675	53987;53988	53988					-0.008396722793804656
SPRPPLISV	9	Unmodified	_SPRPPLISV_					0	0	0		ENSG00000053770|ENST00000261558|AP5M1;nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF	ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.29248046875	2	483.292559	964.570566	0.47265	0.00022843	-0.44212	-0.00021367	0.030528	1.4754E-05	483.29222937917285	47.989	1.0629	47.989	47.519	48.582	0					62	37	3	0	0	0	0.16853	1	10971	10971		38.176	10.547	1	1310100			44389	680	25675	25676	53989	53989					0.08686350685525213
SPRPPLISV	9	Unmodified	_SPRPPLISV_					0	0	0		ENSG00000053770|ENST00000261558|AP5M1;nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF	ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.29241943359375	2	483.292559	964.570566	0.63788	0.00030828	-0.73811	-0.00035672	-0.10023	-4.844E-05	483.2921730382701	47.989	0.77056	48.036	47.803	48.573	0.047523					58	28	3	0	0	0	0.14646	1	10957	10957		36.506	8.8774	1	1857000			44390	680	25675	25676	53990	53990					0.08686350685525213
SPRPPLISV	9	Unmodified	_SPRPPLISV_					0	0	0		ENSG00000053770|ENST00000261558|AP5M1;nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF	ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7677307128906	2	483.292559	964.570566	0.50652	0.0002448	-0.50883	-0.00024591	-0.0023076	-1.1153E-06	483.29213619258957	47.954	0.60764	47.998	47.875	48.483	0.043324					54	22	4	0	0	0	0.23749	1	10943	10943		20.415	3.3016	1	1199500			44391	680	25675	25676	53991	53991					0.08686350685525213
SPRPTGSDL	9	Unmodified	_SPRPTGSDL_					0	0	0		ENSG00000144589|ENST00000456909|STK11IP;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENST00000473899.1_1_2:220473145-220474007:+|nuORF	ENSG00000144589|ENST00000456909|STK11IP	ENSG00000144589|ENST00000456909|STK11IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7536926269531	2	465.237981	928.461409	-0.11734	-5.4592E-05	0.59473	0.00027669	0.47738	0.0002221	465.2380553557122	22.159	0.6824	22.159	21.94	22.622	0					45	23	3	0	0	0	0.026579	2	3066	3066;3124		61.602	21.652	1	276020			44392	4596	25676	25677	53992;53993	53992					-0.005682800046201919
SPRPTGSDL	9	Unmodified	_SPRPTGSDL_					0	0	0		ENSG00000144589|ENST00000456909|STK11IP;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENST00000473899.1_1_2:220473145-220474007:+|nuORF	ENSG00000144589|ENST00000456909|STK11IP	ENSG00000144589|ENST00000456909|STK11IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.753662109375	2	465.237981	928.461409	-0.061893	-2.8795E-05	0.58758	0.00027336	0.52569	0.00024457	465.23801687793224	22.238	0.67225	22.137	21.943	22.616	-0.10034					48	24	3	0	0	0	0.017549	1	3090	3090		67.838	15.57	1	274340			44393	4596	25676	25677	53994	53994					-0.005682800046201919
SPRPTGSDL	9	Unmodified	_SPRPTGSDL_					0	0	0		ENSG00000144589|ENST00000456909|STK11IP;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENST00000473899.1_1_2:220473145-220474007:+|nuORF	ENSG00000144589|ENST00000456909|STK11IP	ENSG00000144589|ENST00000456909|STK11IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.75384521484375	2	465.237981	928.461409	0.0047254	2.1984E-06	0.3459	0.00016093	0.35063	0.00016313	465.2379883129714	22.207	0.63105	22.157	21.948	22.579	-0.049377					45	21	3	0	0	0	0.01909	1	3069	3069		65.474	21.615	1	262540			44394	4596	25676	25677	53995	53995					-0.005682800046201919
SPRPVFVK	8	Unmodified	_SPRPVFVK_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2380065917969	2	465.281995	928.549437	0.014155	6.5863E-06	-0.57806	-0.00026896	-0.5639	-0.00026237	465.2819363772506	22.207	0.34223	22.157	21.948	22.29	-0.049377					21	11	3	0	0	0	0.34039	1	3096	3096		15.847	3.3156	1	47401	+		44395	15330	25677	25678	53996	53996					0.08230385376668892
SPRQGNSKNVL	11	Unmodified	_SPRQGNSKNVL_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.328125	2	600.328193	1198.64183	0.24653	0.000148	-0.20476	-0.00012292	0.041771	2.5076E-05	600.328077649603	15.642	0.42906	15.642	15.413	15.842	0					34	14	3	0	0	0	0.40256	1	1094	1094		10.899	4.1758	1	157190			44396	3269	25678	25679	53997	53997					0.050458186522291726
SPRQGNSKNVL	11	Unmodified	_SPRQGNSKNVL_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3283081054688	2	600.328193	1198.64183	0.29398	0.00017649	0.029896	1.7948E-05	0.32388	0.00019443	600.3281119277179	15.746	0.43457	15.636	15.408	15.842	-0.10981					32	14	3	0	0	0	0.40256	1	1115	1115		10.899	5.6021	1	151330			44397	3269	25678	25679	53998	53998					0.050458186522291726
SPRQGNSKNVL	11	Unmodified	_SPRQGNSKNVL_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3281860351562	2	600.328193	1198.64183	0.1544	9.2689E-05	-0.059023	-3.5433E-05	0.095375	5.7256E-05	600.3281544643309	15.701	0.37844	15.636	15.457	15.836	-0.064414					31	12	3	0	0	0	0.37165	1	1106	1106		14.957	6.8016	1	154380			44398	3269	25678	25679	53999	53999					0.050458186522291726
SPRQLFSAL	9	Unmodified	_SPRQLFSAL_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000564785.5_1_15:75652863-75653028:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.787841796875	2	509.787641	1017.56073	0.56976	0.00029046	0.15669	7.988E-05	0.72645	0.00037034	509.78789685561406	54.046	1.1418	54.046	53.595	54.736	0					81	41	4	0	0	0	0.015027	1	12823	12823		71.708	20.078	1	3097600			44399	4301	25679	25680	54000	54000					0.052651626801548446
SPRQLFSAL	9	Unmodified	_SPRQLFSAL_					0	0	0		nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000564785.5_1_15:75652863-75653028:-|nuORF	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	nc|ENSG00000140400|Q9NTJ4-3|MAN2C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7879943847656	2	509.787641	1017.56073	0.33012	0.00016829	0.45556	0.00023224	0.78569	0.00040053	509.78805034704413	53.988	1.0215	54.045	53.638	54.66	0.05637					76	38	4	0	0	0	0.0048951	2	12760	12760;12805		87.258	34.99	1	3304000			44400	4301	25679	25680	54001;54002	54001					0.052651626801548446
SPRRHQKTHFL	11	Unmodified	_SPRRHQKTHFL_					0	0	0		ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENST00000534277.5_1_16:31724760-31767037:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.27685546875	3	469.596976	1405.7691	0.16306	7.6571E-05	1.5478	0.00072682	1.7108	0.00080339	469.59776367150306	40.845	0.61446	40.944	40.453	41.068	0.099407					37	22	2	0	0	0	0.33025	1	8690	8690		3.8459	0	1	128010			44401	11656	25680	25681	54003	54003					0.08244584317071713
SPRRLIYK	8	Unmodified	_SPRRLIYK_					0	0	0		nc|ENSG00000243238|P06310|IGKV2-30;nc|ENSG00000239571|A0A075B6S6|IGKV2D-30	nc|ENSG00000243238|P06310|IGKV2-30	nc|ENSG00000243238|P06310|IGKV2-30	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2556762695312	2	516.819276	1031.624	0.53497	0.00027648	2.8932	0.0014953	3.4282	0.0017717	517.3229743335272	48.612	0.53844	48.612	48.156	48.694	0					24	18	2	0	0	0	0.34272	1	11026	11026		7.9102	5.0209	1	416060			44402	12962	25681	25682	54004	54004					0.10945148188034182
SPRRLIYK	8	Unmodified	_SPRRLIYK_					0	0	0		nc|ENSG00000243238|P06310|IGKV2-30;nc|ENSG00000239571|A0A075B6S6|IGKV2D-30	nc|ENSG00000243238|P06310|IGKV2-30	nc|ENSG00000243238|P06310|IGKV2-30	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	516.819276	1031.624	0.61507	0.00031788	3.2776	0.0016939	3.8927	0.0020118	517.32304439025	48.698	0.62304	48.743	48.255	48.878	0.044891	0.16217	0.00037004	NaN	7.9102	30	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	586270			44403	12962	25681	25682							0.10945148188034182
SPRRLIYK	8	Unmodified	_SPRRLIYK_					0	0	0		nc|ENSG00000243238|P06310|IGKV2-30;nc|ENSG00000239571|A0A075B6S6|IGKV2D-30	nc|ENSG00000243238|P06310|IGKV2-30	nc|ENSG00000243238|P06310|IGKV2-30	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	516.819276	1031.624	0.47146	0.00024366	2.441	0.0012615	2.9124	0.0015052	517.3227326382412	48.345	0.45166	48.388	48.191	48.643	0.04332	-0.19318	-0.00049474	NaN	7.9102	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164850			44404	12962	25681	25682							0.10945148188034182
SPRRPSRVSEF	11	Unmodified	_SPRRPSRVSEF_					0	0	0		GPRIN3|p.Y696*|1|0.12|ENSG00000185477|chr4:89248011-89248024|CAAGGATGCACCAT/-|frameshift_variant;ENSG00000185477|ENST00000609438|GPRIN3	GPRIN3|p.Y696*|1|0.12|ENSG00000185477|chr4:89248011-89248024|CAAGGATGCACCAT/-|frameshift_variant	GPRIN3|p.Y696*|1|0.12|ENSG00000185477|chr4:89248011-89248024|CAAGGATGCACCAT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.90545654296875	3	439.905587	1316.69493	0.12537	5.5152E-05	-0.017097	-7.5213E-06	0.10828	4.7631E-05	439.905484443019	21.581	0.91529	21.581	21.08	21.996	0					113	32	5	0	0	0	0.3013	1	2862	2862		22.109	9.2363	1	753810			44405	7535	25682	25683	54005	54005					0.04925196434896861
SPRRPSRVSEF	11	Unmodified	_SPRRPSRVSEF_					0	0	0		GPRIN3|p.Y696*|1|0.12|ENSG00000185477|chr4:89248011-89248024|CAAGGATGCACCAT/-|frameshift_variant;ENSG00000185477|ENST00000609438|GPRIN3	GPRIN3|p.Y696*|1|0.12|ENSG00000185477|chr4:89248011-89248024|CAAGGATGCACCAT/-|frameshift_variant	GPRIN3|p.Y696*|1|0.12|ENSG00000185477|chr4:89248011-89248024|CAAGGATGCACCAT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.90557861328125	3	439.905587	1316.69493	0.18654	8.2062E-05	-0.017737	-7.8024E-06	0.16881	7.4259E-05	439.9054524830232	21.667	1.1317	21.566	21.073	22.205	-0.10034					102	40	6	0	0	0	0.37255	1	2924	2924		14.838	5.5941	1	838540			44406	7535	25682	25683	54006	54006					0.04925196434896861
SPRRPSRVSEF	11	Unmodified	_SPRRPSRVSEF_					0	0	0		GPRIN3|p.Y696*|1|0.12|ENSG00000185477|chr4:89248011-89248024|CAAGGATGCACCAT/-|frameshift_variant;ENSG00000185477|ENST00000609438|GPRIN3	GPRIN3|p.Y696*|1|0.12|ENSG00000185477|chr4:89248011-89248024|CAAGGATGCACCAT/-|frameshift_variant	GPRIN3|p.Y696*|1|0.12|ENSG00000185477|chr4:89248011-89248024|CAAGGATGCACCAT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.90545654296875	3	439.905587	1316.69493	0.1115	4.9049E-05	-0.19128	-8.4144E-05	-0.079779	-3.5095E-05	439.90547063026384	21.621	0.99828	21.572	21.092	22.09	-0.049377					91	35	4	0	0	0	0.35173	1	2876	2876		17.572	5.3443	1	845570			44407	7535	25682	25683	54007	54007					0.04925196434896861
SPRSGLIRV	9	Unmodified	_SPRSGLIRV_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.80133056640625	2	492.801083	983.587613	0.56736	0.00027959	-0.17898	-8.8204E-05	0.38837	0.00019139	492.8009813382566	29.192	1.6145	29.192	28.611	30.225	0					149	57	5	0	0	0	0.2141	1	5076	5076		21.59	0	1	3975800			44408	2058	25683	25684	54008	54008					0.09516271291329303
SPRSGLIRV	9	Unmodified	_SPRSGLIRV_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8012390136719	2	492.801083	983.587613	0.39279	0.00019357	-0.018788	-9.259E-06	0.374	0.00018431	492.80103662813923	29.191	1.5865	29.203	28.616	30.202	0.012266					147	54	5	0	0	0	0.28225	1	5082	5082		11.495	0	1	4188200			44409	2058	25683	25684	54009	54009					0.09516271291329303
SPRSLAVL	8	Unmodified	_SPRSLAVL_					0	0	0		ADAMTS5|p.F146Lfs*20|1|0.33|ENSG00000154736|chr21:26965954-26965954|A/-|frameshift_variant	ADAMTS5|p.F146Lfs*20|1|0.33|ENSG00000154736|chr21:26965954-26965954|A/-|frameshift_variant	ADAMTS5|p.F146Lfs*20|1|0.33|ENSG00000154736|chr21:26965954-26965954|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.2682800292969	2	421.758352	841.502152	0.10309	4.3478E-05	0.017305	7.2987E-06	0.12039	5.0777E-05	421.7582091623507	36.799	0.67832	36.887	36.626	37.305	0.087406					48	24	3	0	0	0	0.32038	1	7582	7582		28.487	0	1	375340			44410	12	25684	25685	54010	54010					0.0750610610567719
SPRSNAGIATV	11	Unmodified	_SPRSNAGIATV_					0	0	0		ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	ENST00000480769.5_1_1:185267169-185274781:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.79052734375	2	536.790912	1071.56727	0.31375	0.00016842	-0.058287	-3.1288E-05	0.25547	0.00013713	536.7907501146298	27.354	0.33869	27.343	27.16	27.499	-0.01156					30	11	3	0	0	0	0.32061	1	4629	4629		21.799	4.8572	1	399590			44411	2739	25685	25686	54011	54011					0.034350558408505094
SPRSPATTL	9	Unmodified	_SPRSPATTL_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.256103515625	2	465.256174	928.497795	-0.15936	-7.4144E-05	0.091951	4.2781E-05	-0.067411	-3.1363E-05	465.25613646321176	26.183	0.70536	26.183	25.823	26.528	0					42	24	2	0	0	0	0.1335	1	4304	4304		40.239	5.3071	1	375840			44412	8279	25686	25687	54012	54012					0.03068596892092046
SPRSPATTL	9	Unmodified	_SPRSPATTL_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.25616455078125	2	465.256174	928.497795	-0.15612	-7.2634E-05	0.17956	8.3541E-05	0.023443	1.0907E-05	465.2561581801572	26.195	0.67598	26.156	25.843	26.519	-0.038671					44	23	2	0	0	0	0.2422	1	4315	4315		19.362	4.1135	1	395680			44413	8279	25686	25687	54013	54013					0.03068596892092046
SPRSPATTL	9	Unmodified	_SPRSPATTL_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2561340332031	2	465.256174	928.497795	0.19086	8.8797E-05	-0.16194	-7.5344E-05	0.028916	1.3453E-05	465.2560020864486	26.255	0.81076	26.232	25.774	26.584	-0.022236					51	28	2	0	0	0	0.1558	1	4327	4327		41.956	5.4494	1	378540			44414	8279	25686	25687	54014	54014					0.03068596892092046
SPRSPDTTL	9	Unmodified	_SPRSPDTTL_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7379455566406	2	487.251089	972.487624	0.15883	7.7389E-05	-0.28439	-0.00013857	-0.12556	-6.118E-05	487.2509337037793	25.315	0.75947	25.315	25.064	25.823	0					59	25	3	0	0	0	0.23612	1	4106	4106		18.373	6.1324	1	245230			44415	8279	25687	25688	54015	54015					0.0002798916684696451
SPRSPDTTL	9	Unmodified	_SPRSPDTTL_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.250732421875	2	487.251089	972.487624	0.015738	7.6681E-06	-0.18051	-8.7954E-05	-0.16477	-8.0285E-05	487.2509575269267	25.335	0.77931	25.279	25.074	25.854	-0.055931					56	26	3	0	0	0	0.23612	2	4113	4113;4137		18.373	1.3424	1	246660			44416	8279	25687	25688	54016;54017	54016					0.0002798916684696451
SPRSSLNNSL	10	Unmodified	_SPRSSLNNSL_					0	0	0		FOXJ3|p.S307Hfs*7|1|0.14|ENSG00000198815|chr1:42194905-42194905|A/-|frameshift_variant;nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3	FOXJ3|p.S307Hfs*7|1|0.14|ENSG00000198815|chr1:42194905-42194905|A/-|frameshift_variant	FOXJ3|p.S307Hfs*7|1|0.14|ENSG00000198815|chr1:42194905-42194905|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7802734375	2	537.780544	1073.54654	0.15943	8.5741E-05	-0.44406	-0.00023881	-0.28463	-0.00015307	537.7802452501396	27.858	0.59169	27.858	27.615	28.207	0					48	20	3	0	0	0	0.0046927	2	4786	4786;4840		93.448	42.033	1	790960			44417	8132	25688	25689	54018;54019	54018					0.012704654611980004
SPRSSLNNSL	10	Unmodified	_SPRSSLNNSL_					0	0	0		FOXJ3|p.S307Hfs*7|1|0.14|ENSG00000198815|chr1:42194905-42194905|A/-|frameshift_variant;nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3	FOXJ3|p.S307Hfs*7|1|0.14|ENSG00000198815|chr1:42194905-42194905|A/-|frameshift_variant	FOXJ3|p.S307Hfs*7|1|0.14|ENSG00000198815|chr1:42194905-42194905|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.780517578125	2	537.780544	1073.54654	0.048529	2.6098E-05	-0.343	-0.00018446	-0.29447	-0.00015836	537.7803196586983	27.855	0.64792	27.843	27.536	28.184	-0.012957					64	22	4	0	0	0	0.0037867	1	4794	4794		98.73	56.774	1	777780			44418	8132	25688	25689	54020	54020					0.012704654611980004
SPRSSLNNSL	10	Unmodified	_SPRSSLNNSL_					0	0	0		FOXJ3|p.S307Hfs*7|1|0.14|ENSG00000198815|chr1:42194905-42194905|A/-|frameshift_variant;nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3	FOXJ3|p.S307Hfs*7|1|0.14|ENSG00000198815|chr1:42194905-42194905|A/-|frameshift_variant	FOXJ3|p.S307Hfs*7|1|0.14|ENSG00000198815|chr1:42194905-42194905|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7803344726562	2	537.780544	1073.54654	0.079821	4.2926E-05	-0.53779	-0.00028921	-0.45797	-0.00024629	537.7802023298979	27.805	0.61974	27.793	27.584	28.203	-0.01156					49	21	3	0	0	0	0.0080659	1	4787	4787		84.738	42.782	1	797330			44419	8132	25688	25689	54021	54021					0.012704654611980004
SPRSSTVSL	9	Unmodified	_SPRSSTVSL_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.25347900390625	2	467.253631	932.49271	-0.13607	-6.3581E-05	-0.029903	-1.3972E-05	-0.16598	-7.7554E-05	467.2535335932033	26.092	0.76293	26.092	25.823	26.586	0					58	26	4	0	0	0	0.04299	1	4259	4259		55.503	5.5697	1	880950			44420	2374	25689	25690	54022	54022					0.023762930294765283
SPRSSTVSL	9	Unmodified	_SPRSSTVSL_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.25347900390625	2	467.253631	932.49271	-0.12073	-5.641E-05	-0.10455	-4.8853E-05	-0.22528	-0.00010526	467.2534994186217	26.104	0.87688	26.066	25.843	26.72	-0.038671					76	30	4	0	0	0	0.090256	1	4239	4239		57.722	7.789	1	950140			44421	2374	25689	25690	54023	54023					0.023762930294765283
SPRSSTVSL	9	Unmodified	_SPRSSTVSL_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.25341796875	2	467.253631	932.49271	0.17691	8.266E-05	-0.23786	-0.00011114	-0.060957	-2.8482E-05	467.25341962491694	26.161	0.83315	26.138	25.867	26.7	-0.022236					69	29	4	0	0	0	0.013404	1	4271	4271		74.2	15.521	1	882030			44422	2374	25689	25690	54024	54024					0.023762930294765283
SPRSVGPFAL	10	Unmodified	_SPRSVGPFAL_					0	0	0		ENST00000521667.5_1_8:140743306-141301208:-|nuORF;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;ENST00000522504.5_1_8:140743306-140893377:-|nuORF	ENST00000521667.5_1_8:140743306-141301208:-|nuORF	ENST00000521667.5_1_8:140743306-141301208:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.3101196289062	2	515.787641	1029.56073	0.56967	0.00029383	0.39041	0.00020137	0.96008	0.0004952	515.7877966895974	53.937	0.99338	53.937	53.441	54.435	0					91	36	3	0	0	0	0.29589	1	12705	12705		17.113	0	1	1405500			44423	6192	25690	25691	54025	54025					0.047131626801501625
SPRSVLEEM	9	Oxidation (M)	_SPRSVLEEM(Oxidation (M))_		SPRSVLEEM(1)		SPRSVLEEM(50)	0	0	1		ENSG00000106367|ENST00000337619|AP1S1	ENSG00000106367|ENST00000337619|AP1S1	ENSG00000106367|ENST00000337619|AP1S1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2579956054688	2	532.258056	1062.50156	0.25573	0.00013611	-0.13335	-7.0978E-05	0.12238	6.5137E-05	532.2578794798676	28.364	0.60721	28.364	28.121	28.729	0					36	20	2	0	0	0	0.12329	1	4952	4952		49.554	13.427	1	356640			44424	2077	25691	25692	54026	54026		256			-0.027191013963602018
SPRSVLEEM	9	Oxidation (M)	_SPRSVLEEM(Oxidation (M))_		SPRSVLEEM(1)		SPRSVLEEM(50)	0	0	1		ENSG00000106367|ENST00000337619|AP1S1	ENSG00000106367|ENST00000337619|AP1S1	ENSG00000106367|ENST00000337619|AP1S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2579345703125	2	532.258056	1062.50156	0.17653	9.3959E-05	-0.5158	-0.00027454	-0.33927	-0.00018058	532.2577529789089	28.419	0.7015	28.419	28.104	28.805	0.00046921					40	24	3	0	0	0	0.058995	1	4932	4932		49.554	13.427	1	314450			44425	2077	25691	25692	54027	54027		256			-0.027191013963602018
SPRTPVSPVKF	11	Unmodified	_SPRTPVSPVKF_					0	0	0		nc|ENSG00000108443|P23443-3|RPS6KB1;nc|ENSG00000108443|P23443-5|RPS6KB1;nc|ENSG00000108443|P23443-2|RPS6KB1;ENSG00000108443|ENST00000225577|RPS6KB1	nc|ENSG00000108443|P23443-3|RPS6KB1	nc|ENSG00000108443|P23443-3|RPS6KB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.84912109375	2	607.84823	1213.68191	0.057554	3.4984E-05	0.27764	0.00016876	0.33519	0.00020375	607.8482979226648	39.229	0.61073	39.229	38.958	39.569	0					34	21	2	0	0	0	0.18503	2	8230	8230;8288		32.616	23.64	1	404700			44426	2187	25692	25693	54028;54029	54028					0.08361365322775782
SPRTPVSPVKF	11	Unmodified	_SPRTPVSPVKF_					0	0	0		nc|ENSG00000108443|P23443-3|RPS6KB1;nc|ENSG00000108443|P23443-5|RPS6KB1;nc|ENSG00000108443|P23443-2|RPS6KB1;ENSG00000108443|ENST00000225577|RPS6KB1	nc|ENSG00000108443|P23443-3|RPS6KB1	nc|ENSG00000108443|P23443-3|RPS6KB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.8483276367188	2	607.84823	1213.68191	0.26771	0.00016273	0.097611	5.9333E-05	0.36532	0.00022206	607.8480754439571	39.059	0.54827	39.152	38.974	39.522	0.09267					41	19	3	0	0	0	0.14958	1	8210	8210		42.068	29.195	1	436340			44427	2187	25692	25693	54030	54030					0.08361365322775782
SPRTPVSPVKF	11	Unmodified	_SPRTPVSPVKF_					0	0	0		nc|ENSG00000108443|P23443-3|RPS6KB1;nc|ENSG00000108443|P23443-5|RPS6KB1;nc|ENSG00000108443|P23443-2|RPS6KB1;ENSG00000108443|ENST00000225577|RPS6KB1	nc|ENSG00000108443|P23443-3|RPS6KB1	nc|ENSG00000108443|P23443-3|RPS6KB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.8483276367188	2	607.84823	1213.68191	0.43529	0.00026459	0.20785	0.00012634	0.64314	0.00039093	608.3500817733101	39.099	0.61208	39.199	38.869	39.481	0.099407					44	21	3	0	0	0	0.27396	2	8188	8188;8239		35.08	22.207	1	512640			44428	2187	25692	25693	54031;54032	54031					0.08361365322775782
SPRTSGVL	8	Unmodified	_SPRTSGVL_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.73236083984375	2	408.732335	815.450116	-0.29954	-0.00012243	0.45809	0.00018724	0.15855	6.4804E-05	408.73248008871195	22.841	0.71688	22.841	22.533	23.25	0					65	24	3	0	0	0	0.15072	1	3292	3292		51.63	9.7902	1	966870			44429	1075	25693	25694	54033	54033					0.03500942691914588
SPRTSGVL	8	Unmodified	_SPRTSGVL_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	408.732335	815.450116	-0.17037	-6.9636E-05	0.41854	0.00017107	0.24817	0.00010143	408.7324350199518	22.981	0.89315	22.894	22.54	23.433	-0.087608	-0.00013168	2.5207E-05	NaN	51.63	78	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1088200			44430	1075	25693	25694							0.03500942691914588
SPRTSGVL	8	Unmodified	_SPRTSGVL_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	408.732335	815.450116	-0.050171	-2.0507E-05	0.24832	0.0001015	0.19815	8.0991E-05	408.732390695821	22.992	0.69421	22.947	22.583	23.277	-0.044867	0.053426	-0.00011394	NaN	51.63	65	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1030600			44431	1075	25693	25694							0.03500942691914588
SPRVGKIVM	9	Oxidation (M)	_SPRVGKIVM(Oxidation (M))_		SPRVGKIVM(1)		SPRVGKIVM(44)	0	0	1		nc|ENSG00000006534|P43353-2|ALDH3B1;ENSG00000006534|ENST00000342456|ALDH3B1;ENST00000534425.5_1_11:67431830-67435009:-|nuORF;ENSG00000132746|ENST00000673966|ALDH3B2	nc|ENSG00000006534|P43353-2|ALDH3B1	nc|ENSG00000006534|P43353-2|ALDH3B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.79217529296875	2	501.791869	1001.56919	0.32325	0.00016221	0.15765	7.9107E-05	0.4809	0.00024131	501.7919589952214	22.085	0.62369	21.985	21.716	22.34	-0.10034					45	22	3	0	0	0	0.074552	1	3019	3019		43.772	24.333	1	434830			44432	360	25694	25695	54034	54034		33			0.06846393325122335
SPRVGKIVM	9	Oxidation (M)	_SPRVGKIVM(Oxidation (M))_		SPRVGKIVM(1)		SPRVGKIVM(52)	0	0	1		nc|ENSG00000006534|P43353-2|ALDH3B1;ENSG00000006534|ENST00000342456|ALDH3B1;ENST00000534425.5_1_11:67431830-67435009:-|nuORF;ENSG00000132746|ENST00000673966|ALDH3B2	nc|ENSG00000006534|P43353-2|ALDH3B1	nc|ENSG00000006534|P43353-2|ALDH3B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7921447753906	2	501.791869	1001.56919	0.19854	9.9626E-05	0.45609	0.00022886	0.65463	0.00032849	501.7920348987764	22.004	0.62968	21.954	21.745	22.375	-0.049377					49	22	3	0	0	0	0.05341	1	3002	3002		51.63	25.289	1	436340			44433	360	25694	25695	54035	54035		33			0.06846393325122335
SPRVHSLIL	9	Unmodified	_SPRVHSLIL_					0	0	0		nc|ENSG00000090487|Q9NZD8-2|SPG21;ENSG00000090487|ENST00000204566|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.3115539550781	2	511.311284	1020.60801	0.47284	0.00024177	0.079354	4.0575E-05	0.55219	0.00028234	511.31122034451704	37.874	0.5931	37.874	37.646	38.239	0					56	20	5	0	0	0	0.09758	1	7834	7834		38.615	11.731	1	797370			44434	1378	25695	25696	54036	54036					0.09853441951145214
SPRVHSLIL	9	Unmodified	_SPRVHSLIL_					0	0	0		nc|ENSG00000090487|Q9NZD8-2|SPG21;ENSG00000090487|ENST00000204566|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.3116760253906	2	511.311284	1020.60801	0.32628	0.00016683	0.45558	0.00023295	0.78186	0.00039977	511.3113654736031	37.808	0.59882	37.899	37.638	38.237	0.090881					62	21	5	0	0	0	0.086462	1	7799	7799		40.239	13.356	1	758680			44435	1378	25695	25696	54037	54037					0.09853441951145214
SPRVHSLIL	9	Unmodified	_SPRVHSLIL_					0	0	0		nc|ENSG00000090487|Q9NZD8-2|SPG21;ENSG00000090487|ENST00000204566|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	nc|ENSG00000090487|Q9NZD8-2|SPG21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.3113708496094	2	511.311284	1020.60801	0.21767	0.0001113	0.29807	0.0001524	0.51573	0.0002637	511.3113524109568	37.718	0.59839	37.816	37.604	38.202	0.097527					57	21	4	0	0	0	0.086462	1	7784	7784		40.239	11.752	1	743980			44436	1378	25695	25696	54038	54038					0.09853441951145214
SPRVPASET	9	Unmodified	_SPRVPASET_					0	0	0		ENST00000523259.5_1_5:139931458-139936810:-|nuORF;ENSG00000213523|ENST00000336283|SRA1	ENST00000523259.5_1_5:139931458-139936810:-|nuORF	ENST00000523259.5_1_5:139931458-139936810:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2460021972656	2	472.245806	942.47706	0.03179	1.5013E-05	0.22677	0.00010709	0.25856	0.00012211	472.2459331982773	19.968	0.60823	19.968	19.627	20.235	0					43	22	3	0	0	0	0.09758	2	2400	2352;2400		38.615	7.3464	1	238090			44437	8349	25696	25697	54039;54040	54040					0.003520065124348548
SPRVPASET	9	Unmodified	_SPRVPASET_					0	0	0		ENST00000523259.5_1_5:139931458-139936810:-|nuORF;ENSG00000213523|ENST00000336283|SRA1	ENST00000523259.5_1_5:139931458-139936810:-|nuORF	ENST00000523259.5_1_5:139931458-139936810:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2458190917969	2	472.245806	942.47706	0.29882	0.00014112	-0.1766	-8.3398E-05	0.12222	5.772E-05	472.245785984	20.158	0.71151	20.042	19.579	20.29	-0.11592					49	25	3	0	0	0	0.10059	2	2462	2415;2462		38.176	15.439	1	224590			44438	8349	25696	25697	54041;54042	54042					0.003520065124348548
SPRVPASET	9	Unmodified	_SPRVPASET_					0	0	0		ENST00000523259.5_1_5:139931458-139936810:-|nuORF;ENSG00000213523|ENST00000336283|SRA1	ENST00000523259.5_1_5:139931458-139936810:-|nuORF	ENST00000523259.5_1_5:139931458-139936810:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.24591064453125	2	472.245806	942.47706	0.44591	0.00021058	-0.24222	-0.00011439	0.20369	9.6192E-05	472.24575261154735	20.073	0.54735	20.017	19.652	20.199	-0.055691					45	19	3	0	0	0	0.11201	2	2431	2383;2431		36.506	3.7205	1	228820			44439	8349	25696	25697	54043;54044	54044					0.003520065124348548
SPRVPNSSV	9	Unmodified	_SPRVPNSSV_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7536926269531	2	471.753798	941.493044	0.10835	5.1115E-05	0.14585	6.8805E-05	0.2542	0.00011992	471.75381245641825	24.819	0.45812	24.763	24.46	24.918	-0.055931					29	15	2	0	0	0	0.073988	1	3837	3837		43.982	17.714	1	334500			44440	2674	25697	25698	54045	54045					0.01995712749339873
SPRVPNSSV	9	Unmodified	_SPRVPNSSV_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.7538757324219	2	471.753798	941.493044	-0.027051	-1.2761E-05	0.048893	2.3066E-05	0.021843	1.0304E-05	471.75380511653935	24.719	0.51711	24.688	24.373	24.89	-0.03141					36	17	3	0	0	0	0.15173	1	3801	3801		30.703	12.557	1	362690			44441	2674	25697	25698	54046	54046					0.01995712749339873
SPRVPVIFVVN	11	Unmodified	_SPRVPVIFVVN_					0	0	0		nc|ENSG00000206561|Q9Y215-3|COLQ;nc|ENSG00000206561|Q9Y215-2|COLQ;nc|ENSG00000206561|Q9Y215-5|COLQ;nc|ENSG00000206561|Q9Y215-4|COLQ;ENSG00000206561|ENST00000383788|COLQ	nc|ENSG00000206561|Q9Y215-3|COLQ	nc|ENSG00000206561|Q9Y215-3|COLQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.91412353515625	3	409.580041	1225.71829	-0.028586	-1.1708E-05	-0.49603	-0.00020316	-0.52462	-0.00021487	409.5799350176963	49.709	0.48502	49.709	49.516	50.001	0					38	17	3	0	0	0	0.33085	1	11481	11481		8.2864	2.4183	1	408340			44442	8324	25698	25699	54047	54047					0.11446242219517444
SPRVPVIFVVN	11	Unmodified	_SPRVPVIFVVN_					0	0	0		nc|ENSG00000206561|Q9Y215-3|COLQ;nc|ENSG00000206561|Q9Y215-2|COLQ;nc|ENSG00000206561|Q9Y215-5|COLQ;nc|ENSG00000206561|Q9Y215-4|COLQ;ENSG00000206561|ENST00000383788|COLQ	nc|ENSG00000206561|Q9Y215-3|COLQ	nc|ENSG00000206561|Q9Y215-3|COLQ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5799255371094	3	409.580041	1225.71829	0.068357	2.7997E-05	-0.56658	-0.00023206	-0.49823	-0.00020406	409.579843163495	49.764	0.60872	49.785	49.429	50.038	0.020691					42	22	3	0	0	0	0.46002	1	11510	11510		3.3557	1.103	1	403770			44443	8324	25698	25699	54048	54048					0.11446242219517444
SPRVPVIFVVN	11	Unmodified	_SPRVPVIFVVN_					0	0	0		nc|ENSG00000206561|Q9Y215-3|COLQ;nc|ENSG00000206561|Q9Y215-2|COLQ;nc|ENSG00000206561|Q9Y215-5|COLQ;nc|ENSG00000206561|Q9Y215-4|COLQ;ENSG00000206561|ENST00000383788|COLQ	nc|ENSG00000206561|Q9Y215-3|COLQ	nc|ENSG00000206561|Q9Y215-3|COLQ	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	409.580041	1225.71829	0.099945	4.0935E-05	-0.24572	-0.00010064	-0.14578	-5.9709E-05	409.57987632273284	49.793	0.44101	49.838	49.566	50.007	0.044891	0.060493	0.00026328	NaN	14.171	47	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367110			44444	8324	25698	25699							0.11446242219517444
SPRVQFQSL	9	Unmodified	_SPRVQFQSL_					0	0	0		ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655;ENST00000489320.1_1_7:99158179-99158416:+|nuORF;ENST00000467680.5_1_7:99158164-99159602:+|nuORF;nc|ENSG00000197343|Q8N720-4|ZNF655;nc|ENSG00000197343|Q8N720-2|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.290771484375	2	531.290548	1060.56654	0.55741	0.00029614	-0.54668	-0.00029044	0.010729	5.7003E-06	531.2904201458673	44.27	0.94296	44.27	43.741	44.684	0					94	34	4	0	0	0	0.0016481	2	9798	9798;9846		114.5	36.436	1	3086800			44445	7954	25699	25700	54049;54050	54049					0.03868261191814781
SPRVQFQSL	9	Unmodified	_SPRVQFQSL_					0	0	0		ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655;ENST00000489320.1_1_7:99158179-99158416:+|nuORF;ENST00000467680.5_1_7:99158164-99159602:+|nuORF;nc|ENSG00000197343|Q8N720-4|ZNF655;nc|ENSG00000197343|Q8N720-2|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2907104492188	2	531.290548	1060.56654	0.44739	0.00023769	-0.55669	-0.00029576	-0.1093	-5.807E-05	531.2904589220132	44.1	0.98118	44.177	43.654	44.635	0.077515					78	36	3	0	0	0	0.0019382	3	9697	9697;9744;9792		110.79	39.011	1	3401400			44446	7954	25699	25700	54051;54052;54053	54051					0.03868261191814781
SPRVQFQSL	9	Unmodified	_SPRVQFQSL_					0	0	0		ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655;ENST00000489320.1_1_7:99158179-99158416:+|nuORF;ENST00000467680.5_1_7:99158164-99159602:+|nuORF;nc|ENSG00000197343|Q8N720-4|ZNF655;nc|ENSG00000197343|Q8N720-2|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	ENSG00000197343|ENST00000252713|ZNF655	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2906494140625	2	531.290548	1060.56654	0.45456	0.0002415	-0.3531	-0.0001876	0.10146	5.3903E-05	531.2904497982321	44.015	0.69347	44.099	43.791	44.484	0.083992					76	25	4	0	0	0	0.00082904	2	9734	9679;9734		124.95	46.893	1	3924300			44447	7954	25699	25700	54054;54055	54055					0.03868261191814781
SPRVQRQVTSL	11	Unmodified	_SPRVQRQVTSL_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.2457580566406	3	424.245721	1269.71533	-0.14331	-6.0799E-05	0.27118	0.00011505	0.12787	5.4247E-05	424.2457876924303	27.27	0.48507	27.258	27.042	27.527	-0.011562					37	16	3	0	0	0	0.3429	1	4601	4601		11.065	1.8215	1	204880			44448	342	25700	25701	54056	54056					0.09126367094722809
SPRVTGRLL	9	Unmodified	_SPRVTGRLL_					0	0	0		ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	ENSG00000105447|ENST00000253237|GRWD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8091125488281	2	499.808908	997.603263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.372	1	30.372	29.872	30.872	0								0	0	0	0.20651	1	5550	5550		20.415	2.2796	1				44449	1982	25701	25702	54057	54057					0.10436557808395719
SPRVTVAQL	9	Unmodified	_SPRVTVAQL_					0	0	0		nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000186523|ENST00000448228|FAM86B1;ENSG00000145002|ENST00000262365|FAM86B2;ENSG00000118894|ENST00000427587|EEF2KMT;ENST00000484500.5_1_3:125642769-125647435:+|nuORF;ENST00000524571.6_1_8:12043687-12049316:-|nuORF;ENST00000484945.5_1_3:75472114-75480048:-|nuORF;ENST00000459803.5_1_3:75472114-75480048:-|nuORF	nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENST00000484945.5_1_3:75472114-75480048:-|nuORF	ENST00000484945.5_1_3:75472114-75480048:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7884826660156	2	485.787641	969.56073	0.22166	0.00010768	1.0115	0.00049136	1.2331	0.00059904	485.7883270162086	39.55	0.69083	39.643	39.36	40.051	0.09267					74	24	5	0	0	0	0.022205	2	8320	8320;8366		63.227	19.103	1	1752500			44450	2848;10716	25702	25703	54058;54059	54058					0.07473162680150836
SPRVTVAQL	9	Unmodified	_SPRVTVAQL_					0	0	0		nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000186523|ENST00000448228|FAM86B1;ENSG00000145002|ENST00000262365|FAM86B2;ENSG00000118894|ENST00000427587|EEF2KMT;ENST00000484500.5_1_3:125642769-125647435:+|nuORF;ENST00000524571.6_1_8:12043687-12049316:-|nuORF;ENST00000484945.5_1_3:75472114-75480048:-|nuORF;ENST00000459803.5_1_3:75472114-75480048:-|nuORF	nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENST00000484945.5_1_3:75472114-75480048:-|nuORF	ENST00000484945.5_1_3:75472114-75480048:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	485.787641	969.56073	-0.067381	-3.2733E-05	1.8403	0.000894	1.7729	0.00086127	485.78841480408005	39.725	0.72994	39.725	39.402	40.132	0	0.068958	0.00017639	NaN	63.227	60	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1531200			44451	2848;10716	25702	25703							0.07473162680150836
SPRVTVAQL	9	Unmodified	_SPRVTVAQL_					0	0	0		nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000186523|ENST00000448228|FAM86B1;ENSG00000145002|ENST00000262365|FAM86B2;ENSG00000118894|ENST00000427587|EEF2KMT;ENST00000484500.5_1_3:125642769-125647435:+|nuORF;ENST00000524571.6_1_8:12043687-12049316:-|nuORF;ENST00000484945.5_1_3:75472114-75480048:-|nuORF;ENST00000459803.5_1_3:75472114-75480048:-|nuORF	nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENST00000484945.5_1_3:75472114-75480048:-|nuORF	ENST00000484945.5_1_3:75472114-75480048:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	485.787641	969.56073	0.27934	0.0001357	1.4116	0.00068573	1.6909	0.00082143	485.7883069788278	39.501	0.60515	39.601	39.372	39.977	0.099407	-0.055538	-0.00024015	NaN	63.227	60	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1913000			44452	2848;10716	25702	25703							0.07473162680150836
SPRVVSTSL	9	Unmodified	_SPRVVSTSL_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.2718505859375	2	473.271824	944.529095	0.5994	0.00028368	-0.14948	-7.0746E-05	0.44992	0.00021293	473.27163484707404	33.596	0.52371	33.662	33.38	33.904	0.06636					39	18	3	0	0	0	0.075068	1	6539	6539		65.474	17.725	1	357940			44453	3139	25703	25704	54060	54060					0.05461169926195453
SPRVVSTSL	9	Unmodified	_SPRVVSTSL_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.2720642089844	2	473.271824	944.529095	0.065655	3.1073E-05	0.47947	0.00022692	0.54512	0.00025799	473.2719581298042	33.562	0.49244	33.629	33.415	33.907	0.066704					30	17	2	0	0	0	0.19208	1	6537	6537		33.445	2.1766	1	343120			44454	3139	25703	25704	54061	54061					0.05461169926195453
SPRVVSTSL	9	Unmodified	_SPRVVSTSL_					0	0	0		ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000124198|ENST00000371917|ARFGEF2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	473.271824	944.529095	0.33301	0.0001576	0.15693	7.4272E-05	0.48994	0.00023188	473.2718371664893	33.673	0.48416	33.673	33.456	33.94	0	0.018388	-3.7406E-05	NaN	65.474	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354830			44455	3139	25703	25704							0.05461169926195453
SPRWCFLD	8	Unmodified	_SPRWCFLD_					0	0	0		nc|ENSG00000157680|O75912|DGKI;ENSG00000157680|ENST00000614521|DGKI	nc|ENSG00000157680|O75912|DGKI	nc|ENSG00000157680|O75912|DGKI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2802124023438	2	512.23947	1022.46439	0.31474	0.00016122	0.73216	0.00037504	1.0469	0.00053626	512.2398767789653	76.371	0.62547	76.34	76.109	76.734	-0.031487					37	22	2	0	0	0	0.34198	1	19668	19668		3.5965	0	1	348810			44456	5321	25704	25705	54062	54062					-0.045947281514600036
SPRWRRRWSL	10	Unmodified	_SPRWRRRWSL_					0	0	0			REV__ENST00000368696.3_1_1:153600944-153603085:+|nuORF	REV__ENST00000368696.3_1_1:153600944-153603085:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7715148925781	3	467.26545	1398.77452	0.19621	9.1684E-05	0.78069	0.00036479	0.9769	0.00045647	467.60029372550946	39.576	0.63802	39.676	39.372	40.01	0.099407					28	22	2	0	0	0	0.31597	1	8306	8306		8.4443	4.3277	1	170170	+		44457	20346	25705	25706	54063	54063					0.09108307899555257
SPRYIFTML	9	Oxidation (M)	_SPRYIFTM(Oxidation (M))L_		SPRYIFTM(1)L		SPRYIFTM(110)L	0	0	1		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000131747|ENST00000423485|TOP2A	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2973022460938	2	572.296985	1142.57942	0.31354	0.00017944	0.061862	3.5403E-05	0.3754	0.00021484	572.2970320403333	58.675	1.262	58.675	58.328	59.59	0					120	43	5	0	0	0	0.0019382	3	14229	14184;14229;14273		110.79	58.524	1	9246000			44458	1077;3587	25706	25707	54064;54065;54066	54065		131			0.013829562596811229
SPRYIFTML	9	Oxidation (M)	_SPRYIFTM(Oxidation (M))L_		SPRYIFTM(1)L		SPRYIFTM(110)L	0	0	1		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000131747|ENST00000423485|TOP2A	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.297119140625	2	572.296985	1142.57942	0.40777	0.00023337	-0.043238	-2.4745E-05	0.36453	0.00020862	572.2969451014934	58.457	1.2066	58.548	58.228	59.434	0.091301					127	42	4	0	0	0	0.0019382	4	14162	14116;14162;14206;14252		110.79	58.524	1	8493000			44459	1077;3587	25706	25707	54067;54068;54069;54070	54068		131			0.013829562596811229
SPRYIFTML	9	Oxidation (M)	_SPRYIFTM(Oxidation (M))L_		SPRYIFTM(1)L		SPRYIFTM(110)L	0	0	1		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B;ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000131747|ENST00000423485|TOP2A	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.29736328125	2	572.296985	1142.57942	0.41789	0.00023916	-0.045603	-2.6099E-05	0.37229	0.00021306	572.2969863399175	58.732	1.1236	58.718	58.416	59.54	-0.014267					125	39	5	0	0	0	0.0019382	3	14247	14201;14247;14290		110.79	59.965	1	9759200			44460	1077;3587	25706	25707	54071;54072;54073	54072		131			0.013829562596811229
SPSAAHFITRL	11	Unmodified	_SPSAAHFITRL_					0	0	0		nc|ENSG00000215440|Q8NDH3-5|NPEPL1;nc|ENSG00000215440|Q8NDH3-4|NPEPL1;ENSG00000215440|ENST00000356091|NPEPL1;ENST00000530122.1_1_20:57266543-57280604:+|nuORF;ENST00000529976.5_1_20:57268807-57287813:+|nuORF;ENST00000527587.5_1_20:57268807-57288710:+|nuORF;nc|ENSG00000215440|Q8NDH3-3|NPEPL1;nc|ENSG00000215440|Q8NDH3-2|NPEPL1	nc|ENSG00000215440|Q8NDH3-5|NPEPL1	nc|ENSG00000215440|Q8NDH3-5|NPEPL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3304443359375	2	600.330205	1198.64586	0.51627	0.00030993	0.25873	0.00015532	0.775	0.00046525	600.3301895270122	44.258	1.1648	44.258	43.904	45.069	0					76	42	3	0	0	0	1.3108E-08	2	9771	9771;9818		139.54	111.05	1	2391700			44461	8408	25707	25708	54074;54075	54074					0.054479081459248846
SPSAAHFITRL	11	Unmodified	_SPSAAHFITRL_					0	0	0		nc|ENSG00000215440|Q8NDH3-5|NPEPL1;nc|ENSG00000215440|Q8NDH3-4|NPEPL1;ENSG00000215440|ENST00000356091|NPEPL1;ENST00000530122.1_1_20:57266543-57280604:+|nuORF;ENST00000529976.5_1_20:57268807-57287813:+|nuORF;ENST00000527587.5_1_20:57268807-57288710:+|nuORF;nc|ENSG00000215440|Q8NDH3-3|NPEPL1;nc|ENSG00000215440|Q8NDH3-2|NPEPL1	nc|ENSG00000215440|Q8NDH3-5|NPEPL1	nc|ENSG00000215440|Q8NDH3-5|NPEPL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3306274414062	2	600.330205	1198.64586	0.52576	0.00031563	0.43375	0.00026039	0.95951	0.00057602	600.3302284129821	43.948	1.038	44.026	43.71	44.748	0.077515					73	38	3	0	0	0	5.17E-09	2	9663	9663;9709		150.06	115.13	1	2184400			44462	8408	25707	25708	54076;54077	54076					0.054479081459248846
SPSAAHFITRL	11	Unmodified	_SPSAAHFITRL_					0	0	0		nc|ENSG00000215440|Q8NDH3-5|NPEPL1;nc|ENSG00000215440|Q8NDH3-4|NPEPL1;ENSG00000215440|ENST00000356091|NPEPL1;ENST00000530122.1_1_20:57266543-57280604:+|nuORF;ENST00000529976.5_1_20:57268807-57287813:+|nuORF;ENST00000527587.5_1_20:57268807-57288710:+|nuORF;nc|ENSG00000215440|Q8NDH3-3|NPEPL1;nc|ENSG00000215440|Q8NDH3-2|NPEPL1	nc|ENSG00000215440|Q8NDH3-5|NPEPL1	nc|ENSG00000215440|Q8NDH3-5|NPEPL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3306884765625	2	600.330205	1198.64586	0.36985	0.00022203	0.57234	0.0003436	0.94219	0.00056563	600.3303713116406	43.919	0.99611	44.003	43.736	44.732	0.083992					74	36	3	0	0	0	4.5956E-06	2	9652	9652;9701		129.39	100.89	1	2506900			44463	8408	25707	25708	54078;54079	54078					0.054479081459248846
SPSDRPLSL	9	Unmodified	_SPSDRPLSL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.M687Wfs*11|1|0.33|ENSG00000030066|chr11:47812323-47812323|T/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7774658203125	2	486.261456	970.50836	0.11613	5.6471E-05	0.36064	0.00017537	0.47678	0.00023184	486.26145901763175	38.326	0.75891	38.326	38.007	38.765	0					43	26	3	0	0	0	0.063898	2	7963	7963;8011		47.732	9.5564	1	657390			44464	549	25708	25709	54080;54081	54080					0.021925795465335796
SPSDRPLSL	9	Unmodified	_SPSDRPLSL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.M687Wfs*11|1|0.33|ENSG00000030066|chr11:47812323-47812323|T/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7772216796875	2	486.261456	970.50836	0.3128	0.0001521	-0.10163	-4.9418E-05	0.21117	0.00010269	486.2612590582966	38.285	0.73331	38.376	38.101	38.834	0.090881					50	26	2	0	0	0	0.043711	1	7987	7987		55.235	13.395	1	684700			44465	549	25708	25709	54082	54082					0.021925795465335796
SPSDRPLSL	9	Unmodified	_SPSDRPLSL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;NUP160|p.M687Wfs*11|1|0.33|ENSG00000030066|chr11:47812323-47812323|T/-|frameshift_variant;nc|ENSG00000030066|Q12769-3|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.77728271484375	2	486.261456	970.50836	0.29088	0.00014144	0.081338	3.9551E-05	0.37222	0.00018099	486.261333243818	38.264	0.77193	38.361	38.037	38.808	0.097527					50	27	2	0	0	0	0.07848	2	7972	7972;8015		42.312	4.487	1	822710			44466	549	25708	25709	54083;54084	54083					0.021925795465335796
SPSFHIRKIE	10	Unmodified	_SPSFHIRKIE_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2277526855469	3	405.227779	1212.66151	0.25294	0.0001025	-0.27304	-0.00011064	-0.020103	-8.1463E-06	405.22765368615256	36.836	0.48274	36.929	36.687	37.17	0.093018					53	17	4	0	0	0	0.24548	1	7544	7544		27.088	0.96747	1	386110	+		44467	13679	25709	25710	54085	54085					0.06368194663014037
SPSFHIRKIE	10	Unmodified	_SPSFHIRKIE_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.227779	1212.66151	0.25294	0.0001025	-0.27304	-0.00011064	-0.020103	-8.1463E-06	405.22765368615256	36.836	0.48274	36.929	36.687	37.17	0.093018	-0.004204	9.3787E-05	NaN	27.088	53	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	386110	+		44468	13679	25709	25710							0.06368194663014037
SPSFPRPSL	9	Unmodified	_SPSFPRPSL_					0	0	0		ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant;ENSG00000166716|ENST00000560079|ZNF592	ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2951965332031	2	494.266542	986.51853	0.51014	0.00025214	-0.056658	-2.8004E-05	0.45348	0.00022414	494.2665590834918	48.892	1.1749	48.892	48.205	49.38	0					61	41	2	0	0	0	0.16853	1	11059	11059		31.268	8.5321	1	612270			44469	6104	25710	25711	54086	54086					0.024731872717552505
SPSFPRPSL	9	Unmodified	_SPSFPRPSL_					0	0	0		ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant;ENSG00000166716|ENST00000560079|ZNF592	ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2672119140625	2	494.266542	986.51853	0.49675	0.00024553	-0.11577	-5.722E-05	0.38098	0.0001883	494.2665495189651	48.92	1.3104	48.965	48.179	49.489	0.044891					64	47	2	0	0	0	0.064268	1	11248	11248		47.594	7.3552	1	681910			44470	6104	25710	25711	54087	54087					0.024731872717552505
SPSFPRPSL	9	Unmodified	_SPSFPRPSL_					0	0	0		ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant;ENSG00000166716|ENST00000560079|ZNF592	ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2666931152344	2	494.266542	986.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.925	1	48.957	48.457	49.457	0.032043								0	0	0	0.034764	1	11224	11224		65.474	13.844	1				44471	6104	25710	25711	54088	54088					0.024731872717552505
SPSGRRVYQVL	11	Unmodified	_SPSGRRVYQVL_					0	0	0		ENST00000584519.5_1_17:15881363-15902918:-|nuORF;ENSG00000214941|ENST00000399277|ZSWIM7	ENST00000584519.5_1_17:15881363-15902918:-|nuORF	ENST00000584519.5_1_17:15881363-15902918:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.238525390625	3	421.238566	1260.69387	0.19831	8.3537E-05	0.28929	0.00012186	0.4876	0.00020539	421.2385026593981	33.714	0.94113	33.714	33.365	34.306	0					89	33	4	0	0	0	0.1175	3	6577	6527;6577;6624		37.251	21.712	1	2365600			44472	8394	25711	25712	54089;54090;54091	54090					0.0739498206596636
SPSGRRVYQVL	11	Unmodified	_SPSGRRVYQVL_					0	0	0		ENST00000584519.5_1_17:15881363-15902918:-|nuORF;ENSG00000214941|ENST00000399277|ZSWIM7	ENST00000584519.5_1_17:15881363-15902918:-|nuORF	ENST00000584519.5_1_17:15881363-15902918:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	631.3540649414062	2	631.354211	1260.69387	0.59284	0.00037429	-0.42745	-0.00026987	0.16539	0.00010442	631.3537408301138	33.68	0.80023	33.68	33.393	34.193	0					62	28	3	0	0	0	0.074971	1	6568	6568		46.022	27.649	1	626560			44473	8394	25711	25712	54092	54092					0.0739498206596636
SPSGRRVYQVL	11	Unmodified	_SPSGRRVYQVL_					0	0	0		ENST00000584519.5_1_17:15881363-15902918:-|nuORF;ENSG00000214941|ENST00000399277|ZSWIM7	ENST00000584519.5_1_17:15881363-15902918:-|nuORF	ENST00000584519.5_1_17:15881363-15902918:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2385559082031	3	421.238566	1260.69387	0.39353	0.00016577	0.38989	0.00016424	0.78342	0.00033001	421.2384390485231	33.53	0.99535	33.596	33.295	34.29	0.06636					117	35	4	0	0	0	0.082028	2	6529	6481;6529		31.462	14.816	1	2661500			44474	8394	25711	25712	54093;54094	54094					0.0739498206596636
SPSGRRVYQVL	11	Unmodified	_SPSGRRVYQVL_					0	0	0		ENST00000584519.5_1_17:15881363-15902918:-|nuORF;ENSG00000214941|ENST00000399277|ZSWIM7	ENST00000584519.5_1_17:15881363-15902918:-|nuORF	ENST00000584519.5_1_17:15881363-15902918:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	631.3543701171875	2	631.354211	1260.69387	0.62376	0.00039382	-0.56498	-0.0003567	0.058787	3.7116E-05	631.3535230912055	33.563	1.0789	33.63	33.295	34.374	0.066357					74	38	3	0	0	0	0.036631	1	6506	6506		57.108	33.318	1	619740			44475	8394	25711	25712	54095	54095					0.0739498206596636
SPSGRRVYQVL	11	Unmodified	_SPSGRRVYQVL_					0	0	0		ENST00000584519.5_1_17:15881363-15902918:-|nuORF;ENSG00000214941|ENST00000399277|ZSWIM7	ENST00000584519.5_1_17:15881363-15902918:-|nuORF	ENST00000584519.5_1_17:15881363-15902918:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.238525390625	3	421.238566	1260.69387	-0.10767	-4.5354E-05	0.665	0.00028013	0.55734	0.00023477	421.23851300242717	33.528	0.96447	33.595	33.245	34.209	0.066704					98	34	4	0	0	0	0.056319	2	6517	6471;6517		42.068	20.478	1	2470400			44476	8394	25711	25712	54096;54097	54097					0.0739498206596636
SPSGRRVYQVL	11	Unmodified	_SPSGRRVYQVL_					0	0	0		ENST00000584519.5_1_17:15881363-15902918:-|nuORF;ENSG00000214941|ENST00000399277|ZSWIM7	ENST00000584519.5_1_17:15881363-15902918:-|nuORF	ENST00000584519.5_1_17:15881363-15902918:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.354248046875	2	631.354211	1260.69387	0.22124	0.00013968	0.34983	0.00022086	0.57106	0.00036054	631.3544142887986	33.533	0.61065	33.6	33.328	33.939	0.0667					53	21	3	0	0	0	0.31831	1	6489	6489		20.581	7.5385	1	713340			44477	8394	25711	25712	54098	54098					0.0739498206596636
SPSGSCTMTV	10	Unmodified	_SPSGSCTMTV_					0	0	0		nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3;ENST00000550673.1_1_12:78401028-78404660:+|nuORF	nc|ENSG00000067798|Q8IVL0-3|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.78704833984375	2	485.204435	968.394317	0.49252	0.00023897	-0.62162	-0.00030161	-0.12909	-6.2637E-05	485.2041186760894	19.988	0.15669	19.932	19.877	20.034	-0.055693					8	5	2	0	0	0	0.32123	1	2392	2392		1.6526	0.85899	1	30395			44478	869	25712	25713	54099	54099					-0.09114394602238463
SPSHGKKT	8	Unmodified	_SPSHGKKT_					0	0	0			REV__nc|ENSG00000163218|Q96LB8-2|PGLYRP4	REV__nc|ENSG00000163218|Q96LB8-2|PGLYRP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2431335449219	2	421.229959	840.445365	-0.25488	-0.00010736	-0.24654	-0.00010385	-0.50142	-0.00021122	421.2298847691672	15.749	0.30121	15.749	15.591	15.892	0					15	10	2	0	0	0	0.44389	1	1147	1147		7.9102	0	1	29079	+		44479	17043	25713	25714	54100	54100					0.018760585491463644
SPSHGKKT	8	Unmodified	_SPSHGKKT_					0	0	0			REV__nc|ENSG00000163218|Q96LB8-2|PGLYRP4	REV__nc|ENSG00000163218|Q96LB8-2|PGLYRP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2429504394531	2	421.229959	840.445365	-0.17688	-7.4509E-05	-0.11882	-5.005E-05	-0.2957	-0.00012456	421.2298701681303	15.9	0.28705	15.787	15.665	15.952	-0.11253					15	9	2	0	0	0	0.43302	1	1194	1194		11.64	0	1	25541	+		44480	17043	25713	25714	54101	54101					0.018760585491463644
SPSHPANSF	9	Unmodified	_SPSHPANSF_					0	0	0		ENST00000509697.1_1_4:1164106-1164795:-|nuORF;ENSG00000159674|ENST00000290902|SPON2	ENST00000509697.1_1_4:1164106-1164795:-|nuORF	ENST00000509697.1_1_4:1164106-1164795:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.792236328125	2	472.217049	942.419545	0.222	0.00010483	-0.44528	-0.00021027	-0.22328	-0.00010544	472.21674512566125	20.828	0.54352	20.828	20.594	21.138	0					31	18	2	0	0	0	0.20881	1	2662	2662		27.629	10.687	1	84732			44481	5419	25714	25715	54102	54102					-0.053968356931363815
SPSHPANSF	9	Unmodified	_SPSHPANSF_					0	0	0		ENST00000509697.1_1_4:1164106-1164795:-|nuORF;ENSG00000159674|ENST00000290902|SPON2	ENST00000509697.1_1_4:1164106-1164795:-|nuORF	ENST00000509697.1_1_4:1164106-1164795:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.28765869140625	2	472.217049	942.419545	0.45789	0.00021623	-0.21852	-0.00010319	0.23938	0.00011304	472.2168037091396	20.968	0.63222	20.858	20.666	21.298	-0.11003					31	21	2	0	0	0	0.20881	1	2701	2701		27.629	10.687	1	99331			44482	5419	25714	25715	54103	54103					-0.053968356931363815
SPSHPANSF	9	Unmodified	_SPSHPANSF_					0	0	0		ENST00000509697.1_1_4:1164106-1164795:-|nuORF;ENSG00000159674|ENST00000290902|SPON2	ENST00000509697.1_1_4:1164106-1164795:-|nuORF	ENST00000509697.1_1_4:1164106-1164795:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2876892089844	2	472.217049	942.419545	0.41298	0.00019502	-0.44561	-0.00021042	-0.032626	-1.5406E-05	472.2168181357429	20.858	0.56275	20.805	20.613	21.176	-0.052912					36	19	2	0	0	0	0.22674	1	2674	2674		22.736	4.6013	1	91488			44483	5419	25714	25715	54104	54104					-0.053968356931363815
SPSISPGISI	10	Unmodified	_SPSISPGISI_					0	0	0			REV__nc|ENSG00000158711|P28324-2|ELK4	REV__nc|ENSG00000158711|P28324-2|ELK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.29010009765625	2	479.266207	956.517862	0.62081	0.00029753	-1.0108	-0.00048444	-0.38999	-0.00018691	479.2657023471741	37.438	0.16257	37.438	37.314	37.477	0					9	5	2	0	0	0	0.3144	1	7694	7694		8.7454	0	1	62681	+		44484	16821	25715	25716	54105	54105					0.03786347832055981
SPSKPAKSL	9	Unmodified	_SPSKPAKSL_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000486840.1_1_7:6864046-6864211:-|nuORF;ENST00000478672.1_1_7:5938430-5940236:+|nuORF;ENST00000464543.1_1_7:6864046-6865828:-|nuORF;ENST00000496187.5_1_7:6863683-6865828:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7688903808594	2	457.768917	913.523281	-0.22598	-0.00010345	0.15244	6.9781E-05	-0.073539	-3.3664E-05	457.76885609053403	14.111	0.51784	14.111	13.847	14.365	0					48	17	4	0	0	0	0.0048951	2	620	620;667		87.258	31.755	1	356520			44485	3058	25716	25717	54106;54107	54106					0.06306071414530834
SPSKPAKSL	9	Unmodified	_SPSKPAKSL_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000486840.1_1_7:6864046-6864211:-|nuORF;ENST00000478672.1_1_7:5938430-5940236:+|nuORF;ENST00000464543.1_1_7:6864046-6865828:-|nuORF;ENST00000496187.5_1_7:6863683-6865828:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.76885986328125	2	457.768917	913.523281	-0.20599	-9.4295E-05	0.25501	0.00011674	0.049023	2.2441E-05	457.76893811983797	14.197	0.92585	14.092	13.816	14.742	-0.10466					57	31	3	0	0	0	0.0044119	2	652	652;696		91.085	43.49	1	334690			44486	3058	25716	25717	54108;54109	54108					0.06306071414530834
SPSKPAKSL	9	Unmodified	_SPSKPAKSL_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000486840.1_1_7:6864046-6864211:-|nuORF;ENST00000478672.1_1_7:5938430-5940236:+|nuORF;ENST00000464543.1_1_7:6864046-6865828:-|nuORF;ENST00000496187.5_1_7:6863683-6865828:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.76898193359375	2	457.768917	913.523281	-0.1838	-8.4136E-05	0.2037	9.3247E-05	0.019903	9.1111E-06	457.7688788894483	14.164	0.59772	14.098	13.802	14.4	-0.066068					52	20	4	0	0	0	0.0083763	2	641	641;689		81.915	34.321	1	359010			44487	3058	25716	25717	54110;54111	54110					0.06306071414530834
SPSKRELAK	9	Unmodified	_SPSKRELAK_					0	0	0		CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant;ENSG00000094804|ENST00000209728|CDC6	CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant	CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.66937255859375	2	508.298373	1014.58219	0.24059	0.00012229	-0.4088	-0.00020779	-0.16821	-8.55E-05	508.29807467837026	17.817	0.55988	17.817	17.628	18.188	0					29	18	3	0	0	0	0.26031	1	1856	1856		3.5965	0	1	64379			44488	102	25717	25718	54112	54112					0.07548547708859132
SPSKRELAK	9	Unmodified	_SPSKRELAK_					0	0	0		CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant;ENSG00000094804|ENST00000209728|CDC6	CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant	CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	508.298373	1014.58219	0.091539	4.6529E-05	-0.39468	-0.00020061	-0.30314	-0.00015409	508.29799053932817	17.948	0.42322	17.831	17.694	18.117	-0.11739	-0.017865	-9.0891E-05	NaN	3.5965	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70351			44489	102	25717	25718							0.07548547708859132
SPSKRELAK	9	Unmodified	_SPSKRELAK_					0	0	0		CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant;ENSG00000094804|ENST00000209728|CDC6	CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant	CDC6|p.H270Qfs*3|1|0.03|ENSG00000094804|chr17:40293603-40293604|-/AA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.298373	1014.58219	0.10078	5.1227E-05	-0.21226	-0.00010789	-0.11148	-5.6665E-05	508.2981643376867	17.958	0.43804	17.898	17.704	18.142	-0.060429	0.049022	9.4554E-05	NaN	3.5965	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51336			44490	102	25717	25718							0.07548547708859132
SPSKTRGQIQV	11	Unmodified	_SPSKTRGQIQV_					0	0	0		ENST00000592126.1_1_17:76182898-76183075:-|nuORF;ENSG00000167900|ENST00000301634|TK1	ENST00000592126.1_1_17:76182898-76183075:-|nuORF	ENST00000592126.1_1_17:76182898-76183075:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.8386840820312	2	600.838394	1199.66223	0.25976	0.00015607	0.16127	9.6897E-05	0.42103	0.00025297	600.8382246497063	19.084	0.39855	19.084	18.895	19.294	0					19	13	2	0	0	0	0.46969	1	2125	2125		2.086	0.24177	1	56239			44491	6221	25718	25719	54113	54113					0.07038989312036392
SPSLIQSAN	9	Unmodified	_SPSLIQSAN_					0	0	0			REV__ENSG00000156509|ENST00000428847|FBXO43	REV__ENSG00000156509|ENST00000428847|FBXO43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7586364746094	2	458.740357	915.46616	-0.096828	-4.4419E-05	0.42972	0.00019713	0.33289	0.00015271	458.7404559898973	22.48	0.34436	22.48	22.331	22.675	0					20	11	3	0	0	0	0.24471	1	3144	3144		17.113	1.2657	1	39623	+		44492	16750	25719	25720	54114	54114					0.005046041381433497
SPSLPNITL	9	Unmodified	_SPSLPNITL_					0	0	0		ENST00000461159.6_1_7:18330122-18868840:+|nuORF;HDAC9|p.Y832Mfs*39|1|0.35|ENSG00000048052|chr7:18835500-18835500|T/-|frameshift_variant;nc|ENSG00000048052|Q9UKV0-4|HDAC9;nc|ENSG00000048052|Q9UKV0-2|HDAC9;HDAC9|p.G954Sfs*19|1|0.03|ENSG00000048052|chr7:18935873-18935874|-/TCTAACAT|frameshift_variant;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-6|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;ENSG00000048052|ENST00000686413|HDAC9;nc|ENSG00000048052|Q9UKV0-11|HDAC9;nc|ENSG00000048052|Q9UKV0-9|HDAC9;nc|ENSG00000048052|Q9UKV0-10|HDAC9;nc|ENSG00000048052|Q9UKV0-8|HDAC9;nc|ENSG00000048052|Q9UKV0-3|HDAC9;ENST00000463007.5_1_2:240011659-240219867:-|nuORF;nc|ENSG00000068024|P56524|HDAC4;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;nc|ENSG00000068024|P56524-2|HDAC4;ENSG00000068024|ENST00000543185|HDAC4	ENST00000461159.6_1_7:18330122-18868840:+|nuORF;ENST00000535493.5_1_2:240016681-240219867:-|nuORF	ENST00000535493.5_1_2:240016681-240219867:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.26861572265625	2	471.26875	940.522947	0.16139	7.6056E-05	0.092919	4.379E-05	0.25431	0.00011985	471.2687532731214	70.877	0.61279	70.938	70.63	71.243	0.060783					35	21	2	0	0	0	0.059216	1	17964	17964		60.074	10.141	1	708370			44493	640;873	25720	25721	54115	54115					0.0503065169467618
SPSLPPQCSY	10	Unmodified	_SPSLPPQCSY_					0	0	0		ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	ENSG00000131746|ENST00000254051|TNS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7802734375	2	539.747324	1077.4801	0.036719	1.9819E-05	0.039005	2.1053E-05	0.075724	4.0872E-05	539.74726346712	34.303	0.31156	34.37	34.149	34.461	0.06636					14	10	2	0	0	0	0.32033	1	6689	6689		3.5965	0.31518	1	43074			44494	3586	25721	25722	54116	54116					-0.055544864250805404
SPSLRKQVF	9	Unmodified	_SPSLRKQVF_					0	0	0		ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1	ENST00000565844.1_1_16:19721758-19726357:-|nuORF	ENST00000565844.1_1_16:19721758-19726357:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.792724609375	2	531.308741	1060.60293	0.43421	0.0002307	-0.98138	-0.00052142	-0.54717	-0.00029072	531.3081033409065	29.978	0.56276	29.99	29.746	30.309	0.012264					37	19	4	0	0	0	0.24787	1	5476	5476		15.248	8.5253	1	282220			44495	1844	25722	25723	54117	54117					0.07505138088527019
SPSLRKQVF	9	Unmodified	_SPSLRKQVF_					0	0	0		ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1	ENST00000565844.1_1_16:19721758-19726357:-|nuORF	ENST00000565844.1_1_16:19721758-19726357:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	531.308741	1060.60293	0.19197	0.00010199	-1.192	-0.00063333	-1.0001	-0.00053134	531.3082113217757	30.008	0.49391	30.035	29.787	30.281	0.027157	0.023677	2.8388E-05	NaN	15.248	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339460			44496	1844	25722	25723							0.07505138088527019
SPSNFKVRFF	10	Unmodified	_SPSNFKVRFF_					0	0	0		ENST00000519402.5_1_5:156607865-156667213:+|nuORF;ENSG00000113263|ENST00000422843|ITK;ENST00000522616.1_1_5:156607865-156622098:+|nuORF;ENST00000520555.5_1_5:156607865-156638384:+|nuORF	ENST00000519402.5_1_5:156607865-156667213:+|nuORF	ENST00000519402.5_1_5:156607865-156667213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2195739746094	3	410.220624	1227.64004	-0.17269	-7.0839E-05	-0.79874	-0.00032766	-0.97142	-0.0003985	410.2207074345915	24.64	1.4506	24.609	24.314	25.764	-0.031408					117	50	4	0	0	0	0.33753	1	3841	3841		14.957	0.11926	1	323500			44497	2484	25723	25724	54118	54118					0.035328096342709614
SPSNFKVRFF	10	Unmodified	_SPSNFKVRFF_					0	0	0		ENST00000519402.5_1_5:156607865-156667213:+|nuORF;ENSG00000113263|ENST00000422843|ITK;ENST00000522616.1_1_5:156607865-156622098:+|nuORF;ENST00000520555.5_1_5:156607865-156638384:+|nuORF	ENST00000519402.5_1_5:156607865-156667213:+|nuORF	ENST00000519402.5_1_5:156607865-156667213:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	410.220624	1227.64004	-0.094181	-3.8635E-05	-1.3265	-0.00054415	-1.4207	-0.00058279	410.2203367858147	24.616	1.1113	24.616	24.248	25.359	0	-0.022911	-0.00059567	NaN	14.957	82	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257060			44498	2484	25723	25724							0.035328096342709614
SPSPAPKPR	9	Unmodified	_SPSPAPKPR_					0	0	0		nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENSG00000133226|ENST00000323848|SRRM1;ENST00000488317.1_1_1:24981619-24987388:+|nuORF;ENST00000485541.1_1_1:24981613-24989296:+|nuORF	nc|ENSG00000133226|Q8IYB3-2|SRRM1	nc|ENSG00000133226|Q8IYB3-2|SRRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.7789306640625	2	468.766709	935.518865	-0.34804	-0.00016315	0.42591	0.00019965	0.077871	3.6503E-05	468.766649744982	35.426	0.29134	35.426	35.2	35.492	0					16	10	2	0	0	0	0.18803	1	7054	7054		25.399	0	1	202260			44499	3700	25724	25725	54119	54119					0.048526069916078995
SPSPCYGCGF	10	Unmodified	_SPSPCYGCGF_					0	0	0		ENST00000585919.5_1_19:10202002-10202975:+|nuORF;nc|ENSG00000130813|Q9NUL5-2|SHFL;ENSG00000130813|ENST00000253110|SHFL	ENST00000585919.5_1_19:10202002-10202975:+|nuORF	ENST00000585919.5_1_19:10202002-10202975:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8040771484375	2	509.193871	1016.37319	0.74411	0.0003789	-2.1975	-0.001119	-1.4534	-0.00074006	509.69442714376584	78.379	0.15228	78.349	78.275	78.428	-0.030434					7	5	2	0	0	0	0.32123	1	20275	20275		0	0	1	158650			44500	3520	25725	25726	54120	54120					-0.13434359911093452
SPSPGSKR	8	Unmodified	_SPSPGSKR_					0	0	0			REV__ENST00000578865.5_1_17:73623166-73623316:-|nuORF	REV__ENST00000578865.5_1_17:73623166-73623316:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.2106628417969	2	408.222134	814.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.412	1	18.295	17.795	18.795	-0.11739								0	0	0	0.36486	1	1926	1926		7.9102	0	1		+		44501	22469	25726	25727	54121	54121					0.015077720320959997
SPSPLPPL	8	Unmodified	_SPSPLPPL_					0	0	0			REV__ENST00000337488.10_2_4:54243830-54243974:+|nuORF	REV__ENST00000337488.10_2_4:54243830-54243974:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.25238037109375	2	404.234179	806.453805	-0.018383	-7.4309E-06	-2.5069	-0.0010134	-2.5253	-0.0010208	404.233181242159	72.153	0.54523	72.153	71.855	72.4	0					32	19	2	0	0	0	0.33995	1	18399	18399		10.183	0	1	389730	+		44502	20085	25727	25728	54122	54122					0.04283612465758324
SPSPLRLQL	9	Unmodified	_SPSPLRLQL_					0	0	0		ENSG00000120913|ENST00000409417|PDLIM2;nc|ENSG00000120913|Q96JY6-3|PDLIM2;nc|ENSG00000120913|Q96JY6-5|PDLIM2;nc|ENSG00000120913|Q96JY6-2|PDLIM2;nc|ENSG00000120913|Q96JY6-4|PDLIM2	ENSG00000120913|ENST00000409417|PDLIM2	ENSG00000120913|ENST00000409417|PDLIM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2482604980469	2	505.803291	1009.59203	0.23415	0.00011843	-0.5174	-0.0002617	-0.28325	-0.00014327	505.80301607126466	55.418	0.39605	55.418	55.198	55.594	0					21	14	2	0	0	0	0.24688	1	13263	13263		14.838	4.7643	1	294730			44503	2974	25728	25729	54123	54123					0.08761735714222141
SPSPLRLQL	9	Unmodified	_SPSPLRLQL_					0	0	0		ENSG00000120913|ENST00000409417|PDLIM2;nc|ENSG00000120913|Q96JY6-3|PDLIM2;nc|ENSG00000120913|Q96JY6-5|PDLIM2;nc|ENSG00000120913|Q96JY6-2|PDLIM2;nc|ENSG00000120913|Q96JY6-4|PDLIM2	ENSG00000120913|ENST00000409417|PDLIM2	ENSG00000120913|ENST00000409417|PDLIM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.24798583984375	2	505.803291	1009.59203	0.50693	0.00025641	-0.81153	-0.00041047	-0.30459	-0.00015406	505.8028925938018	55.311	0.40157	55.382	55.216	55.618	0.070885					21	14	2	0	0	0	0.25323	1	13258	13258		10.074	2.7847	1	226700			44504	2974	25728	25729	54124	54124					0.08761735714222141
SPSPLRLQL	9	Unmodified	_SPSPLRLQL_					0	0	0		ENSG00000120913|ENST00000409417|PDLIM2;nc|ENSG00000120913|Q96JY6-3|PDLIM2;nc|ENSG00000120913|Q96JY6-5|PDLIM2;nc|ENSG00000120913|Q96JY6-2|PDLIM2;nc|ENSG00000120913|Q96JY6-4|PDLIM2	ENSG00000120913|ENST00000409417|PDLIM2	ENSG00000120913|ENST00000409417|PDLIM2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	505.803291	1009.59203	0.29631	0.00014987	-0.5432	-0.00027475	-0.24689	-0.00012488	505.8030424394384	55.437	0.41	55.418	55.261	55.671	-0.019081	0.011842	6.4822E-05	NaN	14.838	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276690			44505	2974	25728	25729							0.08761735714222141
SPSPPAFLPF	10	Unmodified	_SPSPPAFLPF_					0	0	0		ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2985229492188	2	530.279118	1058.54368	0.45498	0.00024127	-0.6378	-0.00033821	-0.18282	-9.6945E-05	530.2790607172662	89.672	1.3868	89.762	89.143	90.53	0.090561					210	99	3	0	0	0	0.3641	1	23959	23959		10.074	0.6908	1	199020			44506	905	25729	25730	54125	54125					0.016752420743159746
SPSPPAFLPF	10	Unmodified	_SPSPPAFLPF_					0	0	0		ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2953491210938	2	530.279118	1058.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.15	1	119.18	118.68	119.68	0.026253								0	0	0	0.37044	1	30831	30831		6.2058	0.97511	1				44507	905	25729	25730	54126	54126					0.016752420743159746
SPSQPRDAL	9	Unmodified	_SPSQPRDAL_					0	0	0		nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.750732421875	2	485.751256	969.487959	0.18265	8.8722E-05	-0.7386	-0.00035878	-0.55595	-0.00027006	485.7509788222116	24.419	0.62791	24.419	24.162	24.79	0					31	20	2	0	0	0	0.24247	1	3766	3766		17.443	3.0373	1	78153			44508	12776	25730	25731	54127	54127					0.0019940888670362256
SPSRAARQL	9	Unmodified	_SPSRAARQL_					0	0	0		ENST00000462593.1_1_20:45016251-45022719:-|nuORF;ENST00000488853.5_1_20:45014901-45023130:-|nuORF;ENSG00000062598|ENST00000290246|ELMO2	ENST00000462593.1_1_20:45016251-45022719:-|nuORF	ENST00000462593.1_1_20:45016251-45022719:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.28045654296875	2	493.280515	984.546476	0.044625	2.2013E-05	-0.21197	-0.00010456	-0.16735	-8.2548E-05	493.2803749934413	14.97	0.42299	14.905	14.646	15.069	-0.064414					29	14	3	0	0	0	0.24848	1	889	889		13.906	0	1	288870			44509	767	25731	25732	54128	54128					0.053585102518468375
SPSRAARQL	9	Unmodified	_SPSRAARQL_					0	0	0		ENST00000462593.1_1_20:45016251-45022719:-|nuORF;ENST00000488853.5_1_20:45014901-45023130:-|nuORF;ENSG00000062598|ENST00000290246|ELMO2	ENST00000462593.1_1_20:45016251-45022719:-|nuORF	ENST00000462593.1_1_20:45016251-45022719:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.280515	984.546476	0.082056	4.0477E-05	-0.32247	-0.00015907	-0.24041	-0.00011859	493.28025961206544	14.798	0.38926	14.798	14.591	14.981	0	-0.04104	-2.4012E-06	NaN	18.146	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276690			44510	767	25731	25732							0.053585102518468375
SPSRNRSLQL	10	Unmodified	_SPSRNRSLQL_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.322998046875	2	579.322911	1156.63127	0.11052	6.4026E-05	-0.038333	-2.2207E-05	0.072186	4.1819E-05	579.3229108171658	23.681	0.94832	23.681	23.419	24.367	0					89	32	4	0	0	0	0.012937	2	3522	3481;3522		79.427	31.833	1	1633600			44511	2759	25732	25733	54129;54130	54130					0.05921835997810376
SPSRNRSLQL	10	Unmodified	_SPSRNRSLQL_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.3228759765625	2	579.322911	1156.63127	0.24051	0.00013933	-0.095754	-5.5473E-05	0.14475	8.386E-05	579.3228383641172	23.846	0.93915	23.773	23.448	24.387	-0.072559					86	31	4	0	0	0	0.049822	2	3575	3526;3575		59.052	24.12	1	1597000			44512	2759	25732	25733	54131;54132	54132					0.05921835997810376
SPSRNRSLQL	10	Unmodified	_SPSRNRSLQL_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.3228759765625	2	579.322911	1156.63127	0.35835	0.0002076	-0.24667	-0.0001429	0.11168	6.4699E-05	579.3227710381839	23.872	0.88451	23.833	23.534	24.418	-0.038927					70	30	3	0	0	0	0.017207	2	3578	3531;3578		74.772	34.533	1	1627700			44513	2759	25732	25733	54133;54134	54134					0.05921835997810376
SPSRQPSTP	9	Unmodified	_SPSRQPSTP_					0	0	0			REV__nc|ENSG00000069020|O15021-2|MAST4	REV__nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7436218261719	2	478.743431	955.472308	0.072439	3.4679E-05	0.47181	0.00022588	0.54425	0.00026056	478.7436932042545	16.642	0.65532	16.642	16.184	16.839	0					51	22	3	0	0	0	0.29176	1	1345	1345		10.074	0	1	82053	+		44514	13711	25733	25734	54135	54135					-0.007208776303286868
SPSRQPSTP	9	Unmodified	_SPSRQPSTP_					0	0	0			REV__nc|ENSG00000069020|O15021-2|MAST4	REV__nc|ENSG00000069020|O15021-2|MAST4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	478.743431	955.472308	0.04588	2.1965E-05	0.505	0.00024177	0.55088	0.00026373	478.74363733646425	16.704	0.91962	16.59	16.11	17.029	-0.11434	-0.010124	0.00011096	NaN	10.074	62	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109080	+		44515	13711	25733	25734							-0.007208776303286868
SPSSILSTL	9	Unmodified	_SPSSILSTL_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;nc|ENSG00000250254|Q9NZH5|PTTG2;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.7525634765625	2	452.752933	903.491313	0.27425	0.00012417	-0.23355	-0.00010574	0.040706	1.843E-05	452.752722846047	66.535	0.64265	66.535	66.266	66.909	0					53	22	3	0	0	0	0.0050635	1	16637	16637		88.904	10.754	1	693000			44516	5856	25734	25735	54136	54136					0.035706589407254796
SPSSILSTL	9	Unmodified	_SPSSILSTL_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;nc|ENSG00000250254|Q9NZH5|PTTG2;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.75286865234375	2	452.752933	903.491313	0.23822	0.00010785	-0.12981	-5.877E-05	0.10841	4.9083E-05	452.7527576490891	66.425	0.77334	66.509	66.219	66.992	0.083832					59	27	3	0	0	0	0.0085732	2	16630	16584;16630		81.613	7.0158	1	777810			44517	5856	25734	25735	54137;54138	54138					0.035706589407254796
SPSSILSTL	9	Unmodified	_SPSSILSTL_					0	0	0		ENST00000519287.1_1_5:159849240-159855685:+|nuORF;nc|ENSG00000250254|Q9NZH5|PTTG2;ENSG00000164611|ENST00000352433|PTTG1	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	ENST00000519287.1_1_5:159849240-159855685:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7527160644531	2	452.752933	903.491313	0.11784	5.3352E-05	-0.017556	-7.9485E-06	0.10028	4.5403E-05	452.75279763701343	66.519	0.73024	66.505	66.193	66.923	-0.013596					54	26	3	0	0	0	0.20651	1	16638	16638		26.884	0	1	775190			44518	5856	25734	25735	54139	54139					0.035706589407254796
SPSSKYVKL	9	Unmodified	_SPSSKYVKL_					0	0	0		nc|ENSG00000110906|Q9H3F6-2|KCTD10;ENSG00000110906|ENST00000228495|KCTD10;ENST00000538377.1_1_12:109907257-109915067:-|nuORF;ENST00000535747.5_1_12:109898344-109915067:-|nuORF	nc|ENSG00000110906|Q9H3F6-2|KCTD10	nc|ENSG00000110906|Q9H3F6-2|KCTD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.78985595703125	2	504.78985	1007.56515	0.20649	0.00010424	-0.07869	-3.9722E-05	0.1278	6.4513E-05	504.7896548268137	27.249	0.66374	27.249	26.925	27.589	0					63	22	4	0	0	0	0.0032746	1	4610	4610		100.09	54.391	1	615580			44519	2336	25735	25736	54140	54140					0.06166627103038991
SPSSKYVKL	9	Unmodified	_SPSSKYVKL_					0	0	0		nc|ENSG00000110906|Q9H3F6-2|KCTD10;ENSG00000110906|ENST00000228495|KCTD10;ENST00000538377.1_1_12:109907257-109915067:-|nuORF;ENST00000535747.5_1_12:109898344-109915067:-|nuORF	nc|ENSG00000110906|Q9H3F6-2|KCTD10	nc|ENSG00000110906|Q9H3F6-2|KCTD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7898254394531	2	504.78985	1007.56515	0.13702	6.9164E-05	-0.027443	-1.3853E-05	0.10957	5.5311E-05	504.7897379924944	27.234	0.66002	27.212	26.955	27.615	-0.021412					57	22	3	0	0	0	0.0013924	1	4603	4603		117.76	79.585	1	689510			44520	2336	25735	25736	54141	54141					0.06166627103038991
SPSSKYVKL	9	Unmodified	_SPSSKYVKL_					0	0	0		nc|ENSG00000110906|Q9H3F6-2|KCTD10;ENSG00000110906|ENST00000228495|KCTD10;ENST00000538377.1_1_12:109907257-109915067:-|nuORF;ENST00000535747.5_1_12:109898344-109915067:-|nuORF	nc|ENSG00000110906|Q9H3F6-2|KCTD10	nc|ENSG00000110906|Q9H3F6-2|KCTD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.789794921875	2	504.78985	1007.56515	0.1979	9.9897E-05	-0.021138	-1.067E-05	0.17676	8.9227E-05	504.7897161046073	27.258	0.62571	27.247	26.958	27.584	-0.011562					59	21	4	0	0	0	0.0045319	2	4604	4604;4659		90.135	51.959	1	662760			44521	2336	25735	25736	54142;54143	54142					0.06166627103038991
SPSSVTGNAL	10	Unmodified	_SPSSVTGNAL_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7375183105469	2	466.737814	931.461075	0.14851	6.9317E-05	-0.22279	-0.00010399	-0.07428	-3.4669E-05	466.73770092633714	36.651	0.59194	36.651	36.447	37.039	0					40	20	3	0	0	0	0.16839	1	7451	7451		36.506	3.7205	1	374270			44522	6120	25736	25737	54144	54144					-0.0073969972447684995
SPSSVTGNAL	10	Unmodified	_SPSSVTGNAL_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7379455566406	2	466.737814	931.461075	0.17889	8.3493E-05	-0.14989	-6.9961E-05	0.028992	1.3532E-05	466.7376600225779	36.574	0.67038	36.66	36.334	37.004	0.085716					54	23	3	0	0	0	0.022405	2	7428	7428;7478		69.105	3.8699	1	396450			44523	6120	25736	25737	54145;54146	54145					-0.0073969972447684995
SPSSVTGNAL	10	Unmodified	_SPSSVTGNAL_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	466.737814	931.461075	0.65657	0.00030645	-0.4459	-0.00020812	0.21067	9.8328E-05	466.7374855776664	36.519	0.51799	36.606	36.4	36.918	0.08625	-0.033191	-0.00017341	NaN	69.105	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	452540			44524	6120	25736	25737							-0.0073969972447684995
SPSTQTQL	8	Unmodified	_SPSTQTQL_					0	0	0			REV__ENST00000454635.6_1_9:132253110-132253359:+|nuORF	REV__ENST00000454635.6_1_9:132253110-132253359:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.59033203125	2	431.219257	860.423961	0.15521	6.6929E-05	0.77523	0.00033429	0.93044	0.00040122	431.2195805975123	32.509	1.0884	32.509	32.145	33.233	0					81	38	4	0	0	0	0.31088	1	6312	6312		28.487	0	1	1320100	+		44525	21150	25737	25738	54147	54147					-0.011833712702241428
SPSVRKTH	8	Unmodified	_SPSVRKTH_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2746276855469	2	456.256508	910.498464	0.43675	0.00019927	1.1526	0.00052589	1.5894	0.00072516	456.257225214	21.048	0.19993	20.938	20.779	20.979	-0.11003					9	6	2	0	0	0	0.33245	1	2720	2720		13.508	0	1	87136			44526	3164	25738	25739	54148	54148					0.039634363317986754
SPSYGRQVN	9	Unmodified	_SPSYGRQVN_					0	0	0		ENST00000502586.5_3_4:146019510-146025602:+|nuORF;ENST00000296577.8_1_4:146019510-146025602:+|nuORF	ENST00000502586.5_3_4:146019510-146025602:+|nuORF	ENST00000502586.5_3_4:146019510-146025602:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7656555175781	2	504.24888	1006.48321	0.12307	6.2056E-05	0.92841	0.00046815	1.0515	0.00053021	504.2495077427226	23.211	0.41733	23.123	22.853	23.27	-0.087608					21	14	2	0	0	0	0.23784	1	3375	3375		19.257	5.3509	1	67217			44527	9187	25739	25740	54149	54149					-0.019774752560579145
SPSYGRQVN	9	Unmodified	_SPSYGRQVN_					0	0	0		ENST00000502586.5_3_4:146019510-146025602:+|nuORF;ENST00000296577.8_1_4:146019510-146025602:+|nuORF	ENST00000502586.5_3_4:146019510-146025602:+|nuORF	ENST00000502586.5_3_4:146019510-146025602:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.76556396484375	2	504.24888	1006.48321	0.26054	0.00013138	1.4523	0.00073232	1.7128	0.0008637	504.24932847040213	23.18	0.6249	23.135	22.709	23.334	-0.044867					29	22	2	0	0	0	0.21389	1	3366	3366		25.399	1.3787	1	59906			44528	9187	25739	25740	54150	54150					-0.019774752560579145
SPTFILFLF	9	Unmodified	_SPTFILFLF_					0	0	0		ENST00000431210.2_1_11:74559394-74574146:-|nuORF	ENST00000431210.2_1_11:74559394-74574146:-|nuORF	ENST00000431210.2_1_11:74559394-74574146:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8079223632812	2	542.807511	1083.60047	0.75743	0.00041114	0.28766	0.00015615	1.0451	0.00056728	542.8075322403537	78.36	2.9728	78.419	77.513	80.486	0.058159					343	116	4	0	0	0	0.32733	1	20183	20183		4.756	0	1	1386000			44529	10473	25740	25741	54151	54151					0.06201289630848805
SPTHPSSAL	9	Unmodified	_SPTHPSSAL_					0	0	0		nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10	nc|ENSG00000182872|P98175-4|RBM10	nc|ENSG00000182872|P98175-4|RBM10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7872314453125	2	448.727249	895.439946	0.21569	9.6787E-05	-0.60853	-0.00027307	-0.39284	-0.00017628	448.72688860921585	21.621	0.43051	21.572	21.344	21.774	-0.049377					21	14	2	0	0	0	0.25202	1	2894	2894		10.824	2.2306	1	65657			44530	7329	25741	25742	54152	54152					-0.011956650333331709
SPTKKVAV	8	Unmodified	_SPTKKVAV_					0	0	0		NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant;ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.2605895996094	2	415.260728	828.506903	-0.34736	-0.00014425	0.51676	0.00021459	0.1694	7.0346E-05	415.26075031911904	14.082	0.60581	14.082	13.872	14.478	0					41	20	3	0	0	0	0.11046	1	626	626		58.679	26.373	1	426280			44531	2603	25742	25743	54153	54153					0.08578990248417995
SPTKKVAV	8	Unmodified	_SPTKKVAV_					0	0	0		NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant;ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.2606506347656	2	415.260728	828.506903	-0.073598	-3.0563E-05	0.23021	9.5597E-05	0.15661	6.5034E-05	415.26065428731147	14.148	0.68296	14.044	13.685	14.368	-0.10466					49	23	3	0	0	0	0.17289	1	640	640		47.749	19.262	1	436910			44532	2603	25742	25743	54154	54154					0.08578990248417995
SPTKKVAV	8	Unmodified	_SPTKKVAV_					0	0	0		NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant;ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	NCL|p.K477Lfs*19|1|0.03|ENSG00000115053|chr2:231457661-231457662|-/ATTTGGAATAGTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.2606201171875	2	415.260728	828.506903	-0.12409	-5.1531E-05	0.20459	8.4957E-05	0.080495	3.3427E-05	415.2606996079287	14.152	0.68068	14.086	13.802	14.483	-0.066068					56	23	3	0	0	0	0.12475	1	640	640		56.177	25.541	1	508880			44533	2603	25742	25743	54155	54155					0.08578990248417995
SPTKLPSI	8	Unmodified	_SPTKLPSI_					0	0	0		ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.8963317871094	2	421.752736	841.490919	0.21478	9.0584E-05	-0.072671	-3.0649E-05	0.14211	5.9935E-05	421.7525927878541	40.375	0.88167	40.468	39.943	40.824	0.09267					47	31	2	0	0	0	0.098833	1	8581	8581		82.529	6.7685	1	298220			44534	1879	25743	25744	54156	54156					0.06383284011531032
SPTKLPSI	8	Unmodified	_SPTKLPSI_					0	0	0		ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.89630126953125	2	421.752736	841.490919	0.18295	7.716E-05	-0.15145	-6.3873E-05	0.031505	1.3287E-05	421.75258211413404	40.3	0.77246	40.399	39.922	40.694	0.099407					45	27	2	0	0	0	0.15302	1	8573	8573		55.503	5.9485	1	320600			44535	1879	25743	25744	54157	54157					0.06383284011531032
SPTLQESYEWF	11	Unmodified	_SPTLQESYEWF_					0	0	0			REV__ENSG00000164463|ENST00000296953|CREBRF	REV__ENSG00000164463|ENST00000296953|CREBRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.2871398925781	3	462.878592	1385.61395	0.24012	0.00011115	-0.64831	-0.00030009	-0.40819	-0.00018894	462.87856073295137	45.259	0.8491	45.327	44.979	45.828	0.068569					53	29	3	0	0	0	0.33287	1	10135	10135		2.8433	0	1	506680	+		44536	17159	25744	25745	54158	54158					-0.0634354911853734
SPTLRSGGSL	10	Unmodified	_SPTLRSGGSL_					0	0	0		ENST00000565743.1_1_16:84682580-84682835:+|nuORF	ENST00000565743.1_1_16:84682580-84682835:+|nuORF	ENST00000565743.1_1_16:84682580-84682835:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7668151855469	2	487.766906	973.519259	0.42423	0.00020693	-0.029025	-1.4157E-05	0.39521	0.00019277	487.76678840523334	32.696	0.81196	32.696	32.307	33.119	0					48	28	2	0	0	0	0.011792	1	6265	6265		80.676	10.344	1	529850			44537	11970	25745	25746	54159	54159					0.0314398192082308
SPTLRSGGSL	10	Unmodified	_SPTLRSGGSL_					0	0	0		ENST00000565743.1_1_16:84682580-84682835:+|nuORF	ENST00000565743.1_1_16:84682580-84682835:+|nuORF	ENST00000565743.1_1_16:84682580-84682835:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7668762207031	2	487.766906	973.519259	0.45261	0.00022077	-0.22328	-0.00010891	0.22933	0.00011186	487.7666888214015	32.596	0.82951	32.651	32.233	33.063	0.055309					49	29	2	0	0	0	0.0092666	1	6235	6235		83.429	0.89942	1	557890			44538	11970	25745	25746	54160	54160					0.0314398192082308
SPTLRSGGSL	10	Unmodified	_SPTLRSGGSL_					0	0	0		ENST00000565743.1_1_16:84682580-84682835:+|nuORF	ENST00000565743.1_1_16:84682580-84682835:+|nuORF	ENST00000565743.1_1_16:84682580-84682835:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7669982910156	2	487.766906	973.519259	0.32715	0.00015957	-0.033798	-1.6486E-05	0.29335	0.00014309	487.76680322086406	32.621	0.73603	32.676	32.277	33.013	0.054371					46	26	2	0	0	0	0.011792	1	6235	6235		80.676	14.219	1	500640			44539	11970	25745	25746	54161	54161					0.0314398192082308
SPTPGQHTGSL	11	Unmodified	_SPTPGQHTGSL_					0	0	0		ENST00000573956.1_1_17:79857089-79857644:+|nuORF;nc|ENSG00000141552|Q9NYG5-2|ANAPC11	ENST00000573956.1_1_17:79857089-79857644:+|nuORF	ENST00000573956.1_1_17:79857089-79857644:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.3003540039062	2	541.26727	1080.51999	0.73436	0.00039749	-3.0971	-0.0016764	-2.3627	-0.0012789	541.2650416992794	64.49	0.52111	64.481	64.26	64.781	-0.0095291					33	18	2	0	0	0	0.28192	1	16033	16033		11.518	0	1	206850			44540	12035	25746	25747	54162	54162					-0.017052234301445424
SPTPQLLRA	9	Unmodified	_SPTPQLLRA_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.26715087890625	2	491.787641	981.56073	0.43359	0.00021324	-0.29412	-0.00014464	0.13948	6.8593E-05	491.7874601505229	20.606	0.37536	20.606	20.423	20.798	0					17	12	2	0	0	0	0.25622	1	2569	2569		7.2892	2.96	1	40096	+		44541	18474	25747	25748	54163	54163					0.06921162680123416
SPTQVWVP	8	Unmodified	_SPTQVWVP_					0	0	0			REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6	REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.60015869140625	2	457.242535	912.470518	-0.23795	-0.0001088	-2.5201	-0.0011523	-2.7581	-0.0012611	457.24092952292625	13.357	0.75651	13.29	12.763	13.519	-0.067496					38	26	2	0	0	0	0.34294	1	376	376		7.2892	1.0834	1	59751	+		44542	18571	25748	25749	54164	54164					0.010781133517070884
SPTVRVSVV	9	Unmodified	_SPTVRVSVV_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.28240966796875	2	472.282192	942.549831	-0.26665	-0.00012594	0.54534	0.00025755	0.27869	0.00013162	472.2823953451373	39.241	0.52929	39.241	39.04	39.569	0					46	18	3	0	0	0	0.016571	1	8262	8262		69.338	31.163	1	466040			44543	5669	25749	25750	54165	54165					0.0762576030585933
SPTVRVSVV	9	Unmodified	_SPTVRVSVV_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.281982421875	2	472.282192	942.549831	0.0009051	4.2746E-07	0.15779	7.452E-05	0.15869	7.4947E-05	472.2821857226704	39.166	0.49617	39.259	39.052	39.548	0.09267					42	17	3	0	0	0	0.0031966	1	8236	8236		100.71	58.869	1	495430			44544	5669	25749	25750	54166	54166					0.0762576030585933
SPTVRVSVV	9	Unmodified	_SPTVRVSVV_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.28228759765625	2	472.282192	942.549831	0.32844	0.00015511	0.11708	5.5295E-05	0.44552	0.00021041	472.282226455897	39.141	0.74513	39.24	39.017	39.762	0.099407					39	26	2	0	0	0	0.027957	1	8196	8196		61.09	33.461	1	464360			44545	5669	25749	25750	54167	54167					0.0762576030585933
SPVAHRVAL	9	Unmodified	_SPVAHRVAL_					0	0	0		ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7569274902344	2	475.282526	948.550499	0.1512	7.1863E-05	-0.049901	-2.3717E-05	0.1013	4.8146E-05	475.28219619960015	24.897	0.38686	24.841	24.661	25.048	-0.055931					20	13	2	0	0	0	0.24993	1	3883	3883		13.042	3.6593	1	50514			44546	6495	25750	25751	54168	54168					0.07416599745567964
SPVAHRVAL	9	Unmodified	_SPVAHRVAL_					0	0	0		ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	475.282526	948.550499	0.11646	5.5351E-05	0.010788	5.1275E-06	0.12725	6.0478E-05	475.28240137074596	24.859	0.48861	24.859	24.575	25.064	0	-0.0025377	8.3742E-05	NaN	13.042	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57136			44547	6495	25750	25751							0.07416599745567964
SPVAHRVAL	9	Unmodified	_SPVAHRVAL_					0	0	0		ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	ENSG00000170915|ENST00000442253|PAQR8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	475.282526	948.550499	-0.085914	-4.0833E-05	-0.22773	-0.00010823	-0.31364	-0.00014907	475.2821156473626	24.917	0.33797	24.885	24.709	25.047	-0.031408	0.023364	-0.00014298	NaN	13.042	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47082			44548	6495	25750	25751							0.07416599745567964
SPVARLIP	8	Unmodified	_SPVARLIP_					0	0	0			REV__nc|ENSG00000132185|Q7L513-5|FCRLA	REV__nc|ENSG00000132185|Q7L513-5|FCRLA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.76849365234375	2	426.76872	851.522887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.866	1	42.957	42.457	43.457	0.091362								0	0	0	0.18858	1	9356	9356		46.021	8.047	1		+		44549	15552	25751	25752	54169	54169					0.09118696485336386
SPVFINAKQ	9	Unmodified	_SPVFINAKQ_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.8860778808594	2	502.282192	1002.54983	0.022995	1.155E-05	-1.0927	-0.00054886	-1.0697	-0.00053731	502.2820472349222	13.837	0.62377	13.837	13.597	14.221	0					32	21	2	0	0	0	0.25988	1	560	560		3.9444	0	1	51237	+		44550	18563	25752	25753	54170	54170					0.04865760305847289
SPVFINAKQ	9	Unmodified	_SPVFINAKQ_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.885986328125	2	502.282192	1002.54983	-0.029654	-1.4895E-05	-1.4351	-0.00072082	-1.4647	-0.00073572	502.28210746987344	14.061	0.50178	13.957	13.603	14.105	-0.10466					22	17	2	0	0	0	0.25988	1	586	586		3.9444	0	1	73774	+		44551	18563	25752	25753	54171	54171					0.04865760305847289
SPVFNEKNEVI	11	Unmodified	_SPVFNEKNEVI_					0	0	0		CON__P0C1U8	CON__P0C1U8	CON__P0C1U8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.89239501953125	3	425.890832	1274.65067	0.067897	2.8917E-05	2.4891	0.0010601	2.557	0.001089	425.8922198192899	20.87	0.94348	20.87	20.487	21.431	0					88	32	4	0	0	0	0.35271	1	2622	2622		10.527	0	1	277680		+	44552	217	25753	25754	54172	54172					0.024327474980509578
SPVHAHIV	8	Unmodified	_SPVHAHIV_					0	0	0			REV__ENST00000372310.7_2_1:44462855-44463143:-|nuORF	REV__ENST00000372310.7_2_1:44462855-44463143:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8880310058594	2	430.24287	858.471186	-0.46492	-0.00020003	0.58625	0.00025223	0.12134	5.2204E-05	430.24306964675856	28.157	0.28782	28.157	27.954	28.241	0					14	9	2	0	0	0	0.34218	1	4875	4875		9.3474	0	1	89174	+		44553	20410	25754	25755	54173	54173					0.036289527914163955
SPVIWRPTIM	10	Unmodified	_SPVIWRPTIM_					0	0	0			REV__nc|ENSG00000115109|Q9HCM4-3|EPB41L5	REV__nc|ENSG00000115109|Q9HCM4-3|EPB41L5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3350830078125	2	600.333901	1198.65325	0.70395	0.0004226	0.49544	0.00029743	1.1994	0.00072003	600.3340324848331	84.504	1.742	84.504	84.163	85.905	0					135	66	3	0	0	0	0.40106	1	22537	22537		3.2813	0.78282	1	1184300	+		44554	22957	25755	25756	54174	54174					0.06186924422013362
SPVIWRPTIM	10	Unmodified	_SPVIWRPTIM_					0	0	0			REV__nc|ENSG00000115109|Q9HCM4-3|EPB41L5	REV__nc|ENSG00000115109|Q9HCM4-3|EPB41L5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.8366088867188	2	600.333901	1198.65325	0.71064	0.00042662	0.58222	0.00034953	1.2929	0.00077615	600.3340446435084	83.86	2.8022	83.937	83.243	86.045	0.077095					275	109	3	0	0	0	0.39745	1	22527	22527		3.9444	0.66309	1	1104800	+		44555	22957	25755	25756	54175	54175					0.06186924422013362
SPVKRPRL	8	Unmodified	_SPVKRPRL_					0	0	0		ENSG00000156639|ENST00000287218|ZFAND3	ENSG00000156639|ENST00000287218|ZFAND3	ENSG00000156639|ENST00000287218|ZFAND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.8061218261719	2	476.806168	951.597784	0.08004	3.8164E-05	-0.023305	-1.1112E-05	0.056735	2.7052E-05	476.80607091281735	17.847	0.97225	17.847	17.186	18.158	0					81	33	4	0	0	0	0.41758	1	1777	1777		16.942	0	1	373210			44556	5245	25756	25757	54176	54176					0.12004879016558334
SPVKRPRL	8	Unmodified	_SPVKRPRL_					0	0	0		ENSG00000156639|ENST00000287218|ZFAND3	ENSG00000156639|ENST00000287218|ZFAND3	ENSG00000156639|ENST00000287218|ZFAND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.80609130859375	2	476.806168	951.597784	0.059838	2.8531E-05	0.01031	4.9156E-06	0.070147	3.3447E-05	476.80611938646354	18	0.92679	17.882	17.289	18.215	-0.11739					78	31	4	0	0	0	0.33441	1	1778	1778		26.884	5.137	1	414930			44557	5245	25756	25757	54177	54177					0.12004879016558334
SPVKRPRL	8	Unmodified	_SPVKRPRL_					0	0	0		ENSG00000156639|ENST00000287218|ZFAND3	ENSG00000156639|ENST00000287218|ZFAND3	ENSG00000156639|ENST00000287218|ZFAND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.80609130859375	2	476.806168	951.597784	0.074718	3.5626E-05	-0.030502	-1.4544E-05	0.044216	2.1083E-05	476.8060651388133	17.991	1.0139	17.931	17.269	18.283	-0.060429					81	35	3	0	0	0	0.22	1	1816	1816		39.957	5.8549	1	341540			44558	5245	25756	25757	54178	54178					0.12004879016558334
SPVLAQSL	8	Unmodified	_SPVLAQSL_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.8525085449219	2	407.737086	813.459619	-0.11864	-4.8375E-05	0.12854	5.2411E-05	0.0098985	4.036E-06	407.7371050130805	42.906	0.38261	42.906	42.652	43.034	0					21	13	2	0	0	0	0.31088	1	9357	9357		21.747	0	1	135520			44559	1788	25757	25758	54179	54179					0.04542710977432307
SPVLAQSL	8	Unmodified	_SPVLAQSL_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	407.737086	813.459619	-0.17561	-7.1603E-05	0.34626	0.00014118	0.17065	6.9579E-05	407.73715722885305	42.625	0.40153	42.717	42.554	42.956	0.091362	-0.094411	9.7916E-05	NaN	21.747	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121320			44560	1788	25757	25758							0.04542710977432307
SPVLEAVL	8	Unmodified	_SPVLEAVL_					0	0	0		nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.849853515625	2	414.247286	826.48002	-0.12455	-5.1594E-05	0.19609	8.1232E-05	0.071546	2.9638E-05	414.24730280674595	64.952	0.84398	64.952	64.424	65.268	0					50	30	2	0	0	0	0.31375	1	16034	16034		13.508	4.9146	1	402680			44561	7916	25758	25759	54180	54180					0.05983881637234845
SPVLGRKSPRP	11	Unmodified	_SPVLGRKSPRP_					0	0	0		ENST00000474290.1_1_15:44069338-44069488:+|nuORF	ENST00000474290.1_1_15:44069338-44069488:+|nuORF	ENST00000474290.1_1_15:44069338-44069488:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8745727539062	2	597.359296	1192.70404	0.34325	0.00020504	-4.3968	-0.0026265	-4.0536	-0.0024215	597.8565402544849	101.27	0.40025	101.26	101.03	101.43	-0.0054703					113	55	3	0	0	0	0.32905	1	27068	27068		6.6304	0	1	166110			44562	10920	25759	25760	54181	54181					0.11539589791209437
SPVLRLVL	8	Unmodified	_SPVLRLVL_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-2|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.8000793457031	2	448.80002	895.585488	0.20333	9.1252E-05	-0.00533	-2.3921E-06	0.198	8.886E-05	448.7999807401939	62.282	0.51392	62.379	62.175	62.689	0.096985					34	18	2	0	0	0	0.13814	1	15352	15352		53.833	11.993	1	347320			44563	1038	25760	25761	54182	54182					0.1335184255351578
SPVLSLSSL	9	Unmodified	_SPVLSLSSL_					0	0	0		nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000476333.1_1_6:33280961-33281729:-|nuORF;ENST00000480730.5_1_6:33272736-33281818:-|nuORF	nc|ENSG00000231925|O15533-2|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2776794433594	2	451.7633	901.512048	0.21958	9.9198E-05	0.64965	0.00029349	0.86923	0.00039269	451.7637090427343	71.301	0.38807	71.301	71.043	71.431	0					24	13	2	0	0	0	0.0042343	1	18092	18092		92.491	14.342	1	360340			44564	8473	25761	25762	54183	54183					0.057352493203779886
SPVLSLSSL	9	Unmodified	_SPVLSLSSL_					0	0	0		nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000476333.1_1_6:33280961-33281729:-|nuORF;ENST00000480730.5_1_6:33272736-33281818:-|nuORF	nc|ENSG00000231925|O15533-2|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7635803222656	2	451.7633	901.512048	0.1698	7.6709E-05	0.39326	0.00017766	0.56305	0.00025437	451.76361502094136	71.176	0.38988	71.237	71.044	71.434	0.060783					21	13	2	0	0	0	0.0075874	1	18118	18118		92.491	7.2194	1	346400			44565	8473	25761	25762	54184	54184					0.057352493203779886
SPVLSLSSL	9	Unmodified	_SPVLSLSSL_					0	0	0		nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;ENST00000476333.1_1_6:33280961-33281729:-|nuORF;ENST00000480730.5_1_6:33272736-33281818:-|nuORF	nc|ENSG00000231925|O15533-2|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7635498046875	2	451.7633	901.512048	0.28929	0.00013069	0.51987	0.00023486	0.80916	0.00036555	451.7636819434627	71.327	0.35136	71.302	71.103	71.454	-0.024872					21	12	2	0	0	0	0.0028127	2	18109	18109;18120		103.75	14.845	1	435150			44566	8473	25761	25762	54185;54186	54185					0.057352493203779886
SPVLVRIL	8	Unmodified	_SPVLVRIL_					0	0	0		ENSG00000276231|ENST00000619866|PIK3R6	ENSG00000276231|ENST00000619866|PIK3R6	ENSG00000276231|ENST00000619866|PIK3R6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2605285644531	2	448.80002	895.585488	0.29669	0.00013315	-0.15554	-6.9805E-05	0.14115	6.335E-05	448.799865703863	62.367	0.5887	62.367	62.187	62.776	0					43	21	3	0	0	0	0.34198	1	15471	15471		6.7232	0	1	290240			44567	8724	25762	25763	54187	54187					0.1335184255351578
SPVNPSFHITF	11	Unmodified	_SPVNPSFHITF_					0	0	0			REV__nc|ENSG00000152332|Q8TAS1-2|UHMK1	REV__nc|ENSG00000152332|Q8TAS1-2|UHMK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.7843627929688	2	623.316763	1244.61897	-0.45602	-0.00028425	0.48677	0.00030341	0.030744	1.9163E-05	623.316706757677	34.561	0.30214	34.639	34.505	34.807	0.077377					14	10	2	0	0	0	0.33149	1	6821	6821		5.2969	2.0156	1	140430	+		44568	16573	25763	25764	54188	54188					0.006447995347571123
SPVPILLL	8	Unmodified	_SPVPILLL_					0	0	0		ENST00000217315.9_1_20:30697796-30697841:+|nuORF	ENST00000217315.9_1_20:30697796-30697841:+|nuORF	ENST00000217315.9_1_20:30697796-30697841:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2837219238281	2	426.283672	850.552791	0.14517	6.1885E-05	-0.0096338	-4.1068E-06	0.13554	5.7778E-05	426.28358887742064	85.324	1.106	85.324	84.994	86.1	0					108	41	4	0	0	0	0.073545	2	22394	22394;22440		67.035	0	1	2340200			44569	8825	25764	25765	54189;54190	54189					0.12153635430661325
SPVPILLL	8	Unmodified	_SPVPILLL_					0	0	0		ENST00000217315.9_1_20:30697796-30697841:+|nuORF	ENST00000217315.9_1_20:30697796-30697841:+|nuORF	ENST00000217315.9_1_20:30697796-30697841:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.28363037109375	2	426.283672	850.552791	0.098433	4.196E-05	-0.043296	-1.8456E-05	0.055137	2.3504E-05	426.2835874195436	85.259	1.2341	85.34	84.998	86.232	0.080887					121	46	4	0	0	0	0.028313	2	22392	22344;22392		90.836	0	1	2457200			44570	8825	25764	25765	54191;54192	54192					0.12153635430661325
SPVPILLL	8	Unmodified	_SPVPILLL_					0	0	0		ENST00000217315.9_1_20:30697796-30697841:+|nuORF	ENST00000217315.9_1_20:30697796-30697841:+|nuORF	ENST00000217315.9_1_20:30697796-30697841:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.2836608886719	2	426.283672	850.552791	0.1733	7.3873E-05	-0.064576	-2.7528E-05	0.10872	4.6345E-05	426.28356512194506	85.354	1.1838	85.341	84.941	86.125	-0.01284					108	45	4	0	0	0	0.073545	1	22376	22376		67.035	0	1	2515900			44571	8825	25764	25765	54193	54193					0.12153635430661325
SPVRKLPR	8	Unmodified	_SPVRKLPR_					0	0	0		ENST00000532843.1_1_11:36398008-36400933:+|nuORF;ENST00000530252.1_1_11:36398008-36422672:+|nuORF;ENST00000526682.5_1_11:36398008-36415533:+|nuORF	ENST00000532843.1_1_11:36398008-36400933:+|nuORF	ENST00000532843.1_1_11:36398008-36400933:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.80609130859375	2	476.806168	951.597784	0.08004	3.8164E-05	-0.023305	-1.1112E-05	0.056735	2.7052E-05	476.80607091281735	17.847	0.97225	17.847	17.186	18.158	0					81	33	4	0	0	0	0.33441	1	1722	1722		26.884	5.137	1	373210			44572	11561	25765	25766	54194	54194					0.12004879016569703
SPVRKLPR	8	Unmodified	_SPVRKLPR_					0	0	0		ENST00000532843.1_1_11:36398008-36400933:+|nuORF;ENST00000530252.1_1_11:36398008-36422672:+|nuORF;ENST00000526682.5_1_11:36398008-36415533:+|nuORF	ENST00000532843.1_1_11:36398008-36400933:+|nuORF	ENST00000532843.1_1_11:36398008-36400933:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.80609130859375	2	476.806168	951.597784	0.074718	3.5626E-05	-0.030502	-1.4544E-05	0.044216	2.1083E-05	476.8060651388133	17.991	1.0139	17.931	17.269	18.283	-0.060429					81	35	3	0	0	0	0.41758	1	1768	1768		16.942	4.4107	1	341540			44573	11561	25765	25766	54195	54195					0.12004879016569703
SPVRKTTKIHT	11	Unmodified	_SPVRKTTKIHT_					0	0	0		ENSG00000131379|ENST00000253697|C3orf20;nc|nan|Q8ND61-2|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3800659179688	2	634.377686	1266.74082	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.77	1	105.77	105.27	106.27	-0.0027847								0	0	0	0.36839	1	28012	28012		4.1895	0.90819	1				44574	3559	25766	25767	54196	54196					0.11811841617122809
SPVRRAVKDTL	11	Unmodified	_SPVRRAVKDTL_					0	0	0		nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-3|NEDD4L;nc|ENSG00000049759|Q96PU5-2|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L	nc|ENSG00000049759|Q96PU5-9|NEDD4L	nc|ENSG00000049759|Q96PU5-9|NEDD4L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.8680725097656	3	414.582333	1240.72517	0.36441	0.00015108	-0.80495	-0.00033372	-0.44055	-0.00018264	414.58191867382897	37.618	0.23933	37.705	37.578	37.817	0.087406					13	8	2	0	0	0	0.3322	1	7774	7774		4.7159	0.83959	1	95645			44575	655	25767	25768	54197	54197					0.11443555100095182
SPVRRAVKDTL	11	Unmodified	_SPVRRAVKDTL_					0	0	0		nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-3|NEDD4L;nc|ENSG00000049759|Q96PU5-2|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L	nc|ENSG00000049759|Q96PU5-9|NEDD4L	nc|ENSG00000049759|Q96PU5-9|NEDD4L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	414.582333	1240.72517	0.24617	0.00010206	-0.91172	-0.00037798	-0.66555	-0.00027593	414.58179288161614	37.732	0.18	37.732	37.587	37.767	0	0.013098	-8.6048E-05	NaN	4.7159	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97399			44576	655	25767	25768							0.11443555100095182
SPVRSPRFAVL	11	Unmodified	_SPVRSPRFAVL_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENST00000475306.1_1_1:24410803-24434643:-|nuORF	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2193908691406	3	410.24354	1227.70879	-0.10088	-4.1385E-05	-1.1587	-0.00047536	-1.2596	-0.00051674	410.24297267433917	25.003	0.63557	25.003	24.575	25.21	0					28	21	2	0	0	0	0.33287	1	3820	3820		2.8433	0	1	29304			44577	4458	25768	25769	54198	54198					0.10404473933976988
SPVRSPRFAVL	11	Unmodified	_SPVRSPRFAVL_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENST00000475306.1_1_1:24410803-24434643:-|nuORF	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	410.24354	1227.70879	-0.031872	-1.3075E-05	-0.92142	-0.00037801	-0.95329	-0.00039108	410.57753234845524	25.044	0.29789	24.988	24.862	25.16	-0.055931	-0.0075321	0.00014518	NaN	2.8433	15	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43530			44578	4458	25768	25769							0.10404473933976988
SPVSRGEK	8	Unmodified	_SPVSRGEK_					0	0	0			REV__ENST00000339554.7_2_9:140342831-140343164:-|nuORF	REV__ENST00000339554.7_2_9:140342831-140343164:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.88818359375	2	430.235242	858.45593	-0.11136	-4.7909E-05	0.49266	0.00021196	0.3813	0.00016405	430.2354038846955	22.195	0.1599	22.095	22.045	22.205	-0.10034					8	5	2	0	0	0	0.3433	1	3072	3072		6.2058	0.9089	1	29958	+		44579	20099	25769	25770	54199	54199					0.021040412035858935
SPVVIWAARP	10	Unmodified	_SPVVIWAARP_					0	0	0			REV__ENST00000373517.3_1_X:72434272-72434665:-|nuORF	REV__ENST00000373517.3_1_X:72434272-72434665:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7471313476562	2	548.319109	1094.62366	0.35277	0.00019343	-4.2115	-0.0023092	-3.8587	-0.0021158	548.3167194368956	76.234	0.32121	76.287	76.161	76.482	0.053421					15	10	2	0	0	0	0.31267	1	19637	19637		14.838	5.4551	1	268340	+		44580	20440	25770	25771	54200	54200					0.08013728468154113
SPVVRVAV	8	Unmodified	_SPVVRVAV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.7608947753906	2	413.760895	825.507237	0.2702	0.0001118	-0.56144	-0.0002323	-0.29124	-0.0001205	413.7607657564349	37.648	1.1711	37.648	37.124	38.295	0					84	41	4	0	0	0	0.018723	1	7764	7764		103.75	32.615	1	2071600			44581	6196	25771	25772	54201	54201					0.08750409968286021
SPVVRVAV	8	Unmodified	_SPVVRVAV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.76092529296875	2	413.760895	825.507237	0.34182	0.00014143	-0.55223	-0.00022849	-0.21041	-8.7058E-05	413.7607483098827	37.566	1.1712	37.654	37.09	38.261	0.08741					93	42	5	0	0	0	0.063256	1	7733	7733		71.922	19.654	1	2239500			44582	6196	25771	25772	54202	54202					0.08750409968286021
SPVVRVAV	8	Unmodified	_SPVVRVAV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.76080322265625	2	413.760895	825.507237	0.24077	9.9623E-05	-0.49563	-0.00020507	-0.25485	-0.00010545	413.7607938787057	37.535	1.2574	37.628	37.086	38.344	0.093018					94	45	4	0	0	0	0.04227	1	7713	7713		81.89	20.533	1	2027300			44583	6196	25771	25772	54203	54203					0.08750409968286021
SPWSWLCLCL	10	Unmodified	_SPWSWLCLCL_					0	0	0		ENST00000305885.2_1_11:61564441-61564510:+|nuORF	ENST00000305885.2_1_11:61564441-61564510:+|nuORF	ENST00000305885.2_1_11:61564441-61564510:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.5609130859375	3	403.192801	1206.55657	-0.082094	-3.31E-05	-3.5134	-0.0014166	-3.5955	-0.0014497	403.19168200446654	23.603	0.7065	23.564	23.202	23.909	-0.038927					45	24	3	0	0	0	0.31911	1	3462	3462		6.6304	1.7334	1	84243			44584	9269	25772	25773	54204	54204					-0.038443861294354065
SPYDMLESI	9	Oxidation (M)	_SPYDM(Oxidation (M))LESI_		SPYDM(1)LESI		SPYDM(100)LESI	0	0	1		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000560014.5_1_15:60639831-60644581:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7393188476562	2	535.739165	1069.46378	0.2994	0.0001604	0.21318	0.00011421	0.51258	0.00027461	535.739222521775	61.33	0.81308	61.33	61.022	61.836	0					82	30	4	0	0	0	0.0028127	3	15089	15035;15089;15145		103.75	63.791	1	2593600			44585	7313	25773	25774	54205;54206;54207	54206		815			-0.06817612381837534
SPYDMLESI	9	Oxidation (M)	_SPYDM(Oxidation (M))LESI_		SPYDM(1)LESI		SPYDM(120)LESI	0	0	1		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000560014.5_1_15:60639831-60644581:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7395629882812	2	535.739165	1069.46378	0.51276	0.00027471	0.25368	0.00013591	0.76645	0.00041062	535.7392361492854	62.247	0.99607	62.247	61.836	62.832	0					101	36	4	0	0	0	0.0015545	3	15358	15307;15358;15410		115.69	67.346	1	2492400			44586	7313	25773	25774	54208;54209;54210	54209		815			-0.06817612381837534
SPYDMLESI	9	Oxidation (M)	_SPYDM(Oxidation (M))LESI_		SPYDM(1)LESI		SPYDM(100)LESI	0	0	1		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000560014.5_1_15:60639831-60644581:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7393798828125	2	535.739165	1069.46378	0.064272	3.4433E-05	0.52695	0.00028231	0.59122	0.00031674	535.7393634756738	61.257	0.7476	61.354	61.093	61.841	0.096989					68	27	3	0	0	0	0.0028127	3	15040	14990;15040;15099		103.75	63.791	1	2835500			44587	7313	25773	25774	54211;54212;54213	54212		815			-0.06817612381837534
SPYDMLESI	9	Oxidation (M)	_SPYDM(Oxidation (M))LESI_		SPYDM(1)LESI		SPYDM(120)LESI	0	0	1		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000560014.5_1_15:60639831-60644581:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7396240234375	2	535.739165	1069.46378	0.24725	0.00013246	0.4957	0.00026557	0.74295	0.00039803	535.7393551253491	62.146	1.0401	62.243	61.841	62.881	0.096989					94	37	4	0	0	0	0.0015545	3	15314	15269;15314;15367		115.69	67.346	1	2378400			44588	7313	25773	25774	54214;54215;54216	54215		815			-0.06817612381837534
SPYDMLESI	9	Oxidation (M)	_SPYDM(Oxidation (M))LESI_		SPYDM(1)LESI		SPYDM(100)LESI	0	0	1		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000560014.5_1_15:60639831-60644581:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7393798828125	2	535.739165	1069.46378	0.25745	0.00013793	0.26772	0.00014343	0.52517	0.00028135	535.7392503702888	61.351	0.76478	61.342	61.046	61.81	-0.0094566					77	27	4	0	0	0	0.0028127	3	15071	15014;15071;15125		103.75	63.791	1	3400800			44589	7313	25773	25774	54217;54218;54219	54218		815			-0.06817612381837534
SPYDMLESI	9	Oxidation (M)	_SPYDM(Oxidation (M))LESI_		SPYDM(1)LESI		SPYDM(130)LESI	0	0	1		ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000560014.5_1_15:60639831-60644581:-|nuORF	ENSG00000182718|ENST00000451270|ANXA2	ENSG00000182718|ENST00000451270|ANXA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.739501953125	2	535.739165	1069.46378	0.47227	0.00025302	0.24479	0.00013114	0.71706	0.00038416	535.7392195361615	62.244	0.99297	62.235	61.811	62.804	-0.0085526					100	36	4	0	0	0	0.00056175	3	15346	15299;15346;15400		128.37	80.02	1	2598100			44590	7313	25773	25774	54220;54221;54222	54221		815			-0.06817612381837534
SPYFTHPTI	9	Unmodified	_SPYFTHPTI_					0	0	0		nc|ENSG00000008441|Q14938-3|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-2|NFIX	nc|ENSG00000008441|Q14938-3|NFIX	nc|ENSG00000008441|Q14938-3|NFIX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.7666625976562	2	531.766374	1061.5182	0.6323	0.00033624	-0.15438	-8.2095E-05	0.47792	0.00025414	531.7661549941554	48.652	0.43936	48.652	48.358	48.798	0					28	15	2	0	0	0	1.8851E-11	1	11123	11123		197.17	96.796	1	1881200			44591	398	25774	25775	54223	54223					-0.010102324480840252
SPYFTHPTI	9	Unmodified	_SPYFTHPTI_					0	0	0		nc|ENSG00000008441|Q14938-3|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-2|NFIX	nc|ENSG00000008441|Q14938-3|NFIX	nc|ENSG00000008441|Q14938-3|NFIX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7665405273438	2	531.766374	1061.5182	0.6041	0.00032124	1.1761	0.00062543	1.7802	0.00094667	531.7662460870042	48.68	0.93005	48.725	48.363	49.293	0.044891					81	33	4	0	0	0	6.7091E-11	1	11120	11120		181.33	99.714	1	1606700			44592	398	25774	25775	54224	54224					-0.010102324480840252
SPYFTHPTI	9	Unmodified	_SPYFTHPTI_					0	0	0		nc|ENSG00000008441|Q14938-3|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-2|NFIX	nc|ENSG00000008441|Q14938-3|NFIX	nc|ENSG00000008441|Q14938-3|NFIX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7666625976562	2	531.766374	1061.5182	0.60938	0.00032405	-0.29379	-0.00015623	0.31559	0.00016782	531.7661697293586	48.513	0.51844	48.552	48.29	48.808	0.039299					31	18	2	0	0	0	1.8535E-07	1	11084	11084		172.91	91.293	1	1425200			44593	398	25774	25775	54225	54225					-0.010102324480840252
SPYKKLKEAL	10	Unmodified	_SPYKKLKEAL_					0	0	0		ENSG00000160218|ENST00000291574|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.8528442382812	2	588.852981	1175.69141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.759	1	28.759	28.259	29.259	0.0004673								0	0	0	0.37925	1	5055	5055		2.4985	0.65425	1				44594	5448	25775	25776	54226	54226					0.11059133608341654
SPYLPRGDPVL	11	Unmodified	_SPYLPRGDPVL_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8165893554688	2	607.332413	1212.65027	0.53412	0.00032439	-0.20386	-0.00012381	0.33026	0.00020058	607.3324417170562	53.269	0.43051	53.269	53.062	53.493	0					35	15	3	0	0	0	0.32149	1	12531	12531		20.581	6.9661	1	566630			44595	368	25776	25777	54227	54227					0.0524537256885651
SPYLPRGDPVL	11	Unmodified	_SPYLPRGDPVL_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.332763671875	2	607.332413	1212.65027	0.60656	0.00036838	-0.32611	-0.00019806	0.28044	0.00017032	607.3323275103359	53.254	0.532	53.31	53.079	53.611	0.056255					38	19	3	0	0	0	0.22704	1	12560	12560		50.13	20.29	1	749570			44596	368	25776	25777	54228	54228					0.0524537256885651
SPYLPRGDPVL	11	Unmodified	_SPYLPRGDPVL_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8167114257812	2	607.332413	1212.65027	0.39866	0.00024212	-0.045845	-2.7843E-05	0.35282	0.00021428	607.3324498897125	53.353	0.47093	53.343	53.166	53.637	-0.0096092					37	17	3	0	0	0	0.32149	1	12574	12574		20.581	2.4346	1	761610			44597	368	25776	25777	54229	54229					0.0524537256885651
SPYPGLRLI	9	Unmodified	_SPYPGLRLI_					0	0	0		nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1;ENST00000531303.5_1_11:6412683-6415445:+|nuORF;ENST00000534405.5_1_11:6413241-6415834:+|nuORF	nc|ENSG00000166311|P17405-4|SMPD1	nc|ENSG00000166311|P17405-4|SMPD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3004150390625	2	508.300384	1014.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.866	1	59.866	59.366	60.366	0								0	0	0	0.08777	1	14604	14604		49.554	30.297	1				44598	6060	25777	25778	54230	54230					0.07950637202554844
SPYPGLRLI	9	Unmodified	_SPYPGLRLI_					0	0	0		nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1;ENST00000531303.5_1_11:6412683-6415445:+|nuORF;ENST00000534405.5_1_11:6413241-6415834:+|nuORF	nc|ENSG00000166311|P17405-4|SMPD1	nc|ENSG00000166311|P17405-4|SMPD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.30047607421875	2	508.300384	1014.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.692	1	59.787	59.287	60.287	0.095093								0	0	0	0.080859	1	14546	14546		51.63	15.164	1				44599	6060	25777	25778	54231	54231					0.07950637202554844
SPYPGLRLI	9	Unmodified	_SPYPGLRLI_					0	0	0		nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1;ENST00000531303.5_1_11:6412683-6415445:+|nuORF;ENST00000534405.5_1_11:6413241-6415834:+|nuORF	nc|ENSG00000166311|P17405-4|SMPD1	nc|ENSG00000166311|P17405-4|SMPD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.29998779296875	2	508.300384	1014.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.829	1	59.925	59.425	60.425	0.095093								0	0	0	0.039802	1	14588	14588		63.961	36.332	1				44600	6060	25777	25778	54232	54232					0.07950637202554844
SPYPGLRLI	9	Unmodified	_SPYPGLRLI_					0	0	0		nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1;ENST00000531303.5_1_11:6412683-6415445:+|nuORF;ENST00000534405.5_1_11:6413241-6415834:+|nuORF	nc|ENSG00000166311|P17405-4|SMPD1	nc|ENSG00000166311|P17405-4|SMPD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.30023193359375	2	508.300384	1014.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.982	1	60.077	59.577	60.577	0.095093								0	0	0	0.052743	1	14634	14634		60.074	34.675	1				44601	6060	25777	25778	54233	54233					0.07950637202554844
SPYPGLRLI	9	Unmodified	_SPYPGLRLI_					0	0	0		nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1;ENST00000531303.5_1_11:6412683-6415445:+|nuORF;ENST00000534405.5_1_11:6413241-6415834:+|nuORF	nc|ENSG00000166311|P17405-4|SMPD1	nc|ENSG00000166311|P17405-4|SMPD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3006896972656	2	508.300384	1014.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.799	1	59.787	59.287	60.287	-0.011486								0	0	0	0.15136	1	14576	14576		34.402	6.2285	1				44602	6060	25777	25778	54234	54234					0.07950637202554844
SPYPGLRLI	9	Unmodified	_SPYPGLRLI_					0	0	0		nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1;ENST00000531303.5_1_11:6412683-6415445:+|nuORF;ENST00000534405.5_1_11:6413241-6415834:+|nuORF	nc|ENSG00000166311|P17405-4|SMPD1	nc|ENSG00000166311|P17405-4|SMPD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3001403808594	2	508.300384	1014.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.948	1	59.936	59.436	60.436	-0.011486								0	0	0	0.039802	1	14622	14622		63.961	37.077	1				44603	6060	25777	25778	54235	54235					0.07950637202554844
SPYPGLRLI	9	Unmodified	_SPYPGLRLI_					0	0	0		nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1;ENST00000531303.5_1_11:6412683-6415445:+|nuORF;ENST00000534405.5_1_11:6413241-6415834:+|nuORF	nc|ENSG00000166311|P17405-4|SMPD1	nc|ENSG00000166311|P17405-4|SMPD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.30010986328125	2	508.300384	1014.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.118	1	60.106	59.606	60.606	-0.011486								0	0	0	0.052743	1	14675	14675		60.074	34.675	1				44604	6060	25777	25778	54236	54236					0.07950637202554844
SPYPGLRLISL	11	Unmodified	_SPYPGLRLISL_					0	0	0		nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1;ENST00000531303.5_1_11:6412683-6415445:+|nuORF;ENST00000534405.5_1_11:6413241-6415834:+|nuORF	nc|ENSG00000166311|P17405-4|SMPD1	nc|ENSG00000166311|P17405-4|SMPD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.3587646484375	2	608.358431	1214.70231	0.46177	0.00028092	-0.050819	-3.0916E-05	0.41095	0.00025001	608.3583687286521	71.82	0.96921	71.82	71.431	72.4	0					89	34	4	0	0	0	0.0043859	4	18263	18212;18263;18313;18375		78.116	55.458	1	1172500			44605	6060	25778	25779	54237;54238;54239;54240	54238					0.10354535982605739
SPYPGLRLISL	11	Unmodified	_SPYPGLRLISL_					0	0	0		nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1;ENST00000531303.5_1_11:6412683-6415445:+|nuORF;ENST00000534405.5_1_11:6413241-6415834:+|nuORF	nc|ENSG00000166311|P17405-4|SMPD1	nc|ENSG00000166311|P17405-4|SMPD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.358642578125	2	608.358431	1214.70231	0.46508	0.00028294	-0.080484	-4.8963E-05	0.3846	0.00023397	608.3582691574968	71.769	0.92348	71.825	71.487	72.411	0.056572					86	33	4	0	0	0	0.0061056	3	18264	18215;18264;18320		90.104	60.666	1	1327800			44606	6060	25778	25779	54241;54242;54243	54242					0.10354535982605739
SPYPGLRLISL	11	Unmodified	_SPYPGLRLISL_					0	0	0		nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1;ENST00000531303.5_1_11:6412683-6415445:+|nuORF;ENST00000534405.5_1_11:6413241-6415834:+|nuORF	nc|ENSG00000166311|P17405-4|SMPD1	nc|ENSG00000166311|P17405-4|SMPD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.358642578125	2	608.358431	1214.70231	0.394	0.0002397	-0.045479	-2.7667E-05	0.34852	0.00021203	608.3582698222691	71.851	0.90773	71.824	71.426	72.334	-0.027275					78	32	4	0	0	0	0.0061056	3	18289	18242;18289;18341		90.104	58.066	1	1144900			44607	6060	25778	25779	54244;54245;54246	54245					0.10354535982605739
SPYPRVKVDF	10	Unmodified	_SPYPRVKVDF_					0	0	0		nc|ENSG00000172890|Q6IA69-2|NADSYN1;ENSG00000172890|ENST00000319023|NADSYN1	nc|ENSG00000172890|Q6IA69-2|NADSYN1	nc|ENSG00000172890|Q6IA69-2|NADSYN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.220458984375	3	403.220513	1206.63971	0.11078	4.4669E-05	0.077012	3.1053E-05	0.18779	7.5721E-05	403.55481545266707	46.046	1.0072	46.046	45.291	46.298	0					92	36	3	0	0	0	0.18007	2	10311	10311;10364		35.08	8.9588	1	690780			44608	6670	25779	25780	54247;54248	54247					0.04465389914412299
SPYPRVKVDF	10	Unmodified	_SPYPRVKVDF_					0	0	0		nc|ENSG00000172890|Q6IA69-2|NADSYN1;ENSG00000172890|ENST00000319023|NADSYN1	nc|ENSG00000172890|Q6IA69-2|NADSYN1	nc|ENSG00000172890|Q6IA69-2|NADSYN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.22064208984375	3	403.220513	1206.63971	-0.15138	-6.1038E-05	0.15152	6.1095E-05	0.00014234	5.7395E-08	403.2205746823734	45.762	0.95499	45.822	45.195	46.15	0.059837					87	33	3	0	0	0	0.33036	1	10209	10209		16.275	5.7471	1	675070			44609	6670	25779	25780	54249	54249					0.04465389914412299
SPYPRVKVDF	10	Unmodified	_SPYPRVKVDF_					0	0	0		nc|ENSG00000172890|Q6IA69-2|NADSYN1;ENSG00000172890|ENST00000319023|NADSYN1	nc|ENSG00000172890|Q6IA69-2|NADSYN1	nc|ENSG00000172890|Q6IA69-2|NADSYN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.22039794921875	3	403.220513	1206.63971	0.048188	1.9431E-05	-0.094229	-3.7995E-05	-0.04604	-1.8564E-05	403.2204306253376	45.768	1.0823	45.833	45.091	46.174	0.065048					101	39	3	0	0	0	0.092344	3	10250	10199;10250;10305		49.742	23.621	1	676760			44610	6670	25779	25780	54250;54251;54252	54251					0.04465389914412299
SPYPTKTQTM	10	Oxidation (M)	_SPYPTKTQTM(Oxidation (M))_		SPYPTKTQTM(1)		SPYPTKTQTM(57)	0	0	1		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.2793579101562	2	585.278989	1168.54342	0.39158	0.00022919	0.38661	0.00022628	0.7782	0.00045546	585.2792785246578	20.498	0.81726	20.498	20.235	21.052	0					80	28	5	0	0	0	0.058704	2	2568	2518;2568		57.108	32.117	1	576510			44611	5753	25780	25781	54253;54254	54254		682			-0.03410545707856727
SPYPTKTQTM	10	Oxidation (M)	_SPYPTKTQTM(Oxidation (M))_		SPYPTKTQTM(1)		SPYPTKTQTM(83)	0	0	1		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.27978515625	2	585.278989	1168.54342	0.54479	0.00031885	0.20692	0.00012111	0.75171	0.00043996	585.279126379526	20.706	0.71337	20.596	20.35	21.063	-0.11003					70	24	5	0	0	0	0.0094051	2	2600	2600;2650		83.278	52.009	1	665570			44612	5753	25780	25781	54255;54256	54255		682			-0.03410545707856727
SPYPTKTQTM	10	Oxidation (M)	_SPYPTKTQTM(Oxidation (M))_		SPYPTKTQTM(1)		SPYPTKTQTM(71)	0	0	1		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.2794799804688	2	585.278989	1168.54342	0.61466	0.00035975	0.17824	0.00010432	0.7929	0.00046407	585.2790786528587	20.576	0.78609	20.523	20.302	21.088	-0.052912					76	27	5	0	0	0	0.020733	2	2595	2548;2595		70.929	49.392	1	580170			44613	5753	25780	25781	54257;54258	54258		682			-0.03410545707856727
SPYQNIKIL	9	Unmodified	_SPYQNIKIL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;ENST00000436365.1_1_X:47577979-47578291:-|nuORF;nc|ENSG00000102172|P52788-2|SMS	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.3110961914062	2	538.310949	1074.60735	0.53629	0.00028869	-0.32246	-0.00017358	0.21383	0.00011511	538.3108190927395	52.536	0.72088	52.536	52.239	52.96	0					75	25	4	0	0	0	7.3453E-05	2	12357	12308;12357		145.13	79.895	1	4835200			44614	1749	25781	25782	54259;54260	54260					0.0730260251141317
SPYQNIKIL	9	Unmodified	_SPYQNIKIL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;ENST00000436365.1_1_X:47577979-47578291:-|nuORF;nc|ENSG00000102172|P52788-2|SMS	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.311279296875	2	538.310949	1074.60735	0.50506	0.00027188	-0.16521	-8.8936E-05	0.33985	0.00018295	538.3108729838231	52.521	0.67899	52.571	52.228	52.907	0.050575					74	24	4	0	0	0	7.3453E-05	2	12336	12288;12336		145.13	79.895	1	4164300			44615	1749	25781	25782	54261;54262	54262					0.0730260251141317
SPYQNIKIL	9	Unmodified	_SPYQNIKIL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;ENST00000436365.1_1_X:47577979-47578291:-|nuORF;nc|ENSG00000102172|P52788-2|SMS	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.3112182617188	2	538.310949	1074.60735	0.43006	0.0002315	-0.16646	-8.9609E-05	0.26359	0.00014189	538.3108995893664	52.641	0.73878	52.64	52.274	53.013	-0.00081253					79	26	4	0	0	0	7.3453E-05	2	12378	12328;12378		145.13	79.895	1	4531100			44616	1749	25781	25782	54263;54264	54264					0.0730260251141317
SPYQRRDSDR	10	Unmodified	_SPYQRRDSDR_					0	0	0		ENST00000519806.1_1_8:40532148-40554851:-|nuORF;ENSG00000165061|ENST00000297737|ZMAT4	ENST00000519806.1_1_8:40532148-40554851:-|nuORF	ENST00000519806.1_1_8:40532148-40554851:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.571044921875	3	427.209447	1278.60651	-0.2733	-0.00011676	0.73207	0.00031275	0.45878	0.00019599	427.20982935849173	15.87	0.38919	15.87	15.557	15.947	0					19	13	2	0	0	0	0.32162	1	1073	1073		0.77653	0.14971	1	21118			44617	5920	25782	25783	54265	54265					-0.021648438755846655
SPYSKTLVL	9	Unmodified	_SPYSKTLVL_					0	0	0		nc|ENSG00000100505|Q9C026-5|TRIM9;nc|ENSG00000100505|Q9C026|TRIM9;ENSG00000100505|ENST00000684578|TRIM9;nc|ENSG00000100505|Q9C026-4|TRIM9	nc|ENSG00000100505|Q9C026-5|TRIM9	nc|ENSG00000100505|Q9C026-5|TRIM9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.27972412109375	2	504.292225	1006.5699	0.088865	4.4814E-05	-0.78276	-0.00039474	-0.6939	-0.00034993	504.29168679891507	46.242	0.40145	46.242	46.085	46.487	0					23	14	2	0	0	0	0.17555	1	10374	10374		27.223	4.487	1	401470			44618	1604	25783	25784	54266	54266					0.06687511245809219
SPYSKTLVL	9	Unmodified	_SPYSKTLVL_					0	0	0		nc|ENSG00000100505|Q9C026-5|TRIM9;nc|ENSG00000100505|Q9C026|TRIM9;ENSG00000100505|ENST00000684578|TRIM9;nc|ENSG00000100505|Q9C026-4|TRIM9	nc|ENSG00000100505|Q9C026-5|TRIM9	nc|ENSG00000100505|Q9C026-5|TRIM9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2799377441406	2	504.292225	1006.5699	0.044004	2.2191E-05	-0.98911	-0.0004988	-0.94511	-0.00047661	504.2918099856483	46.05	0.34963	46.11	45.984	46.333	0.059834					21	12	2	0	0	0	0.064268	1	10329	10329		47.594	11.467	1	435140			44619	1604	25783	25784	54267	54267					0.06687511245809219
SPYSKTLVL	9	Unmodified	_SPYSKTLVL_					0	0	0		nc|ENSG00000100505|Q9C026-5|TRIM9;nc|ENSG00000100505|Q9C026|TRIM9;ENSG00000100505|ENST00000684578|TRIM9;nc|ENSG00000100505|Q9C026-4|TRIM9	nc|ENSG00000100505|Q9C026-5|TRIM9	nc|ENSG00000100505|Q9C026-5|TRIM9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2796325683594	2	504.292225	1006.5699	0.38485	0.00019407	-0.80516	-0.00040604	-0.42032	-0.00021196	504.29179951166407	46.067	0.43678	46.132	45.9	46.336	0.065048					22	15	2	0	0	0	0.1645	1	10330	10330		40.239	16.219	1	427200			44620	1604	25783	25784	54268	54268					0.06687511245809219
SPYSVVCKYF	10	Unmodified	_SPYSVVCKYF_					0	0	0		nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	nc|ENSG00000133606|Q9UHC7-4|MKRN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.827392578125	2	596.788992	1191.56343	0.42233	0.00025204	-3.9495	-0.002357	-3.5272	-0.002105	597.288872888943	39.324	0.47393	39.424	39.262	39.736	0.099403					25	16	2	0	0	0	0.31515	1	8295	8295		12.241	2.1667	1	203560			44621	3716	25784	25785	54269	54269					-0.024687499772198862
SPYYRTKL	8	Unmodified	_SPYYRTKL_					0	0	0		ENST00000569581.1_1_16:28592390-28600520:+|nuORF;ENSG00000176476|ENST00000317058|SGF29	ENST00000569581.1_1_16:28592390-28600520:+|nuORF	ENST00000569581.1_1_16:28592390-28600520:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2977294921875	2	514.282192	1026.54983	0.119	6.1198E-05	-0.6322	-0.00032513	-0.5132	-0.00026393	514.2818665148118	27.47	0.68658	27.47	27.237	27.924	0					33	23	2	0	0	0	0.29394	1	4694	4694		36.127	7.6402	1	138720			44622	6932	25785	25786	54270	54270					0.037617603058379245
SPYYRTKL	8	Unmodified	_SPYYRTKL_					0	0	0		ENST00000569581.1_1_16:28592390-28600520:+|nuORF;ENSG00000176476|ENST00000317058|SGF29	ENST00000569581.1_1_16:28592390-28600520:+|nuORF	ENST00000569581.1_1_16:28592390-28600520:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.29833984375	2	514.282192	1026.54983	-0.0010537	-5.4189E-07	-0.30038	-0.00015448	-0.30143	-0.00015502	514.281944436716	27.533	0.42546	27.511	27.242	27.667	-0.021412					25	14	2	0	0	0	0.20663	1	4683	4683		41.84	12.758	1	153790			44623	6932	25785	25786	54271	54271					0.037617603058379245
SPYYRTKL	8	Unmodified	_SPYYRTKL_					0	0	0		ENST00000569581.1_1_16:28592390-28600520:+|nuORF;ENSG00000176476|ENST00000317058|SGF29	ENST00000569581.1_1_16:28592390-28600520:+|nuORF	ENST00000569581.1_1_16:28592390-28600520:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2979125976562	2	514.282192	1026.54983	-0.0719	-3.6977E-05	-0.17659	-9.0816E-05	-0.24849	-0.00012779	514.2820982036446	27.5	0.68988	27.488	27.29	27.98	-0.011562					32	23	3	0	0	0	0.18275	1	4696	4696		46.021	17.534	1	201590			44624	6932	25785	25786	54272	54272					0.037617603058379245
SQADGSFLK	9	Unmodified	_SQADGSFLK_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7405090332031	2	476.740357	951.46616	0.35267	0.00016813	0.22954	0.00010943	0.58221	0.00027756	476.7403035837292	29.373	0.6904	29.373	29.142	29.833	0					39	24	2	0	0	0	0.20679	1	5244	5244		22.658	4.5117	1	226260			44625	5043	25786	25787	54273	54273					-0.011513958618706965
SQADGSFLK	9	Unmodified	_SQADGSFLK_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.74041748046875	2	476.740357	951.46616	0.28062	0.00013378	3.4072	0.0016244	3.6879	0.0017582	476.74055545304583	29.388	0.63937	29.4	29.134	29.774	0.012264					46	21	3	0	0	0	0.1426	1	5235	5235		32.037	4.4087	1	243790			44626	5043	25786	25787	54274	54274					-0.011513958618706965
SQADGSFLK	9	Unmodified	_SQADGSFLK_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.7406005859375	2	476.740357	951.46616	0.06997	3.3357E-05	0.51282	0.00024448	0.58279	0.00027784	476.7404828928734	29.36	0.6321	29.374	29.166	29.798	0.013474					34	21	2	0	0	0	0.12279	1	5236	5236		34.932	4.2955	1	318190			44627	5043	25786	25787	54275	54275					-0.011513958618706965
SQAEIYHNR	9	Unmodified	_SQAEIYHNR_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2731323242188	2	559.272887	1116.53122	0.13015	7.2792E-05	0.63017	0.00035244	0.76032	0.00042523	559.2730883747236	15.64	0.61348	15.53	15.312	15.925	-0.10981					33	20	2	0	0	0	0.22935	1	1087	1087		19.362	9.818	1	93906			44628	2536	25787	25788	54276	54276					-0.022384013360351673
SQAEIYHNR	9	Unmodified	_SQAEIYHNR_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2730712890625	2	559.272887	1116.53122	0.018358	1.0267E-05	0.73312	0.00041002	0.75148	0.00042028	559.2730648940309	15.621	0.58192	15.556	15.36	15.942	-0.064414					37	19	4	0	0	0	0.19157	1	1089	1089		24.882	18.251	1	83389			44629	2536	25787	25788	54277	54277					-0.022384013360351673
SQAEIYHNR	9	Unmodified	_SQAEIYHNR_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	559.272887	1116.53122	0.0516	2.8859E-05	0.54859	0.00030681	0.60019	0.00033567	559.2730278497862	15.511	0.66142	15.511	15.257	15.918	0	-0.021678	-0.00011519	NaN	24.882	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74496			44630	2536	25787	25788							-0.022384013360351673
SQAFPSVSK	9	Unmodified	_SQAFPSVSK_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-11|SORBS1;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;nc|ENSG00000095637|Q9BX66-3|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-4|SORBS1;nc|ENSG00000095637|Q9BX66-7|SORBS1;ENST00000474353.6_1_10:97106208-97250794:-|nuORF	nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.254638671875	2	475.750724	949.486896	-0.052433	-2.4945E-05	-1.3359	-0.00063554	-1.3883	-0.00066049	475.7499619590314	30.086	0.52807	30.114	29.894	30.422	0.027157					25	17	2	0	0	0	0.25527	1	5400	5400		9.544	3.7835	1	180660			44631	12607	25788	25789	54278	54278					0.010131945178159185
SQAHKLFMR	9	Unmodified	_SQAHKLFMR_					0	0	0		ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.7647705078125	2	559.300393	1116.58623	0.40786	0.00022812	2.2113	0.0012368	2.6191	0.0014649	559.3015458061062	30.465	0.47512	30.493	30.218	30.693	0.027946					26	16	2	0	0	0	0.25779	1	5545	5545		6.2058	3.2105	1	123700			44632	1314	25789	25790	54279	54279					0.03260313930900338
SQCRWPSSSTT	11	Unmodified	_SQCRWPSSSTT_					0	0	0			REV__OTUD7A|p.S115Pfs*42|1|0.21|ENSG00000169918|chr15:31559176-31559176|A/-|frameshift_variant	REV__OTUD7A|p.S115Pfs*42|1|0.21|ENSG00000169918|chr15:31559176-31559176|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.2142028808594	3	413.852271	1238.53499	-0.085436	-3.5358E-05	0.4629	0.00019157	0.37746	0.00015621	413.85220458233175	17.492	0.47128	17.492	17.396	17.867	0					18	15	2	0	0	0	0.33175	1	1647	1647		2.2527	0.51045	1	20119	+		44633	23282	25790	25791	54280	54280					-0.07474099624459996
SQCRWPSSSTT	11	Unmodified	_SQCRWPSSSTT_					0	0	0			REV__OTUD7A|p.S115Pfs*42|1|0.21|ENSG00000169918|chr15:31559176-31559176|A/-|frameshift_variant	REV__OTUD7A|p.S115Pfs*42|1|0.21|ENSG00000169918|chr15:31559176-31559176|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.21441650390625	3	413.852271	1238.53499	0.1116	4.6187E-05	0.38596	0.00015973	0.49756	0.00020592	413.852229357265	17.733	0.53391	17.673	17.444	17.978	-0.060429					28	18	3	0	0	0	0.33073	1	1663	1663		3.5927	0	1	33393	+		44634	23282	25790	25791	54281	54281					-0.07474099624459996
SQDKSAIAAGF	11	Unmodified	_SQDKSAIAAGF_					0	0	0		nc|ENSG00000132874|Q15849-2|SLC14A2;ENSG00000132874|ENST00000255226|SLC14A2	nc|ENSG00000132874|Q15849-2|SLC14A2	nc|ENSG00000132874|Q15849-2|SLC14A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.2953491210938	2	547.77747	1093.54039	0.60855	0.00033335	2.5558	0.0014	3.1644	0.0017334	547.7780681765632	59.124	0.4717	59.11	58.806	59.278	-0.014267					28	16	2	0	0	0	0.25499	1	14418	14418		26.268	3.5319	1	250500			44635	3672	25791	25792	54282	54282					-0.0026405277033063612
SQDVLVPWH	9	Unmodified	_SQDVLVPWH_					0	0	0		ENSG00000137760|ENST00000428149|ALKBH8;nc|ENSG00000137760|Q96BT7-4|ALKBH8	ENSG00000137760|ENST00000428149|ALKBH8	ENSG00000137760|ENST00000428149|ALKBH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.26904296875	2	540.777274	1079.53999	0.55442	0.00029982	-0.92668	-0.00050113	-0.37225	-0.00020131	540.7769955078983	30.281	0.63838	30.281	30.088	30.727	0					41	22	3	0	0	0	0.26145	1	5619	5619		2.0598	0.21551	1	258050			44636	4072	25792	25793	54283	54283					0.003405723004561878
SQDVLVPWH	9	Unmodified	_SQDVLVPWH_					0	0	0		ENSG00000137760|ENST00000428149|ALKBH8;nc|ENSG00000137760|Q96BT7-4|ALKBH8	ENSG00000137760|ENST00000428149|ALKBH8	ENSG00000137760|ENST00000428149|ALKBH8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	540.777274	1079.53999	0.55976	0.0003027	-0.68191	-0.00036876	-0.12216	-6.6059E-05	540.7770104789416	30.306	0.36357	30.334	30.159	30.523	0.027946	-0.0051149	9.8122E-05	NaN	2.0598	33	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201450			44637	4072	25792	25793							0.003405723004561878
SQDVLVPWH	9	Unmodified	_SQDVLVPWH_					0	0	0		ENSG00000137760|ENST00000428149|ALKBH8;nc|ENSG00000137760|Q96BT7-4|ALKBH8	ENSG00000137760|ENST00000428149|ALKBH8	ENSG00000137760|ENST00000428149|ALKBH8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	540.777274	1079.53999	0.25025	0.00013533	-0.69277	-0.00037464	-0.44252	-0.0002393	540.7769277625769	30.375	0.62423	30.402	30.134	30.758	0.027157	0.063004	8.6379E-05	NaN	2.0598	48	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263010			44638	4072	25792	25793							0.003405723004561878
SQEKDGLH	8	Unmodified	_SQEKDGLH_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.6080627441406	2	457.222331	912.430109	0.21466	9.8149E-05	0.33732	0.00015423	0.55199	0.00025238	457.2222975562845	89.1	0.6964	89.1	88.672	89.369	0					56	29	3	0	0	0	0.34247	1	23555	23555		4.756	0	1	137080	+		44639	14825	25793	25794	54284	54284					-0.029608530387008614
SQEKDGLH	8	Unmodified	_SQEKDGLH_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.60821533203125	2	457.222331	912.430109	0.24446	0.00011177	0.29219	0.00013359	0.53665	0.00024537	457.2223650943171	88.996	0.81096	88.995	88.562	89.373	-0.00080872					52	33	2	0	0	0	0.34092	1	23498	23498		8.5933	0	1	132310	+		44640	14825	25793	25794	54285	54285					-0.029608530387008614
SQERRRKR	8	Unmodified	_SQERRRKR_					0	0	0		AluSq2_dup47728|chr15:101493488-101493800:-|1.390206736039434|0.2791420296698466|2.32|524.0|3|1|sense	AluSq2_dup47728|chr15:101493488-101493800:-|1.390206736039434|0.2791420296698466|2.32|524.0|3|1|sense	AluSq2_dup47728|chr15:101493488-101493800:-|1.390206736039434|0.2791420296698466|2.32|524.0|3|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3291015625	2	558.328862	1114.64317	0.64437	0.00035977	-0.12532	-6.9968E-05	0.51905	0.0002898	558.3286625133064	32.117	0.58362	32.159	31.909	32.493	0.042366					33	20	2	0	0	0	0.46155	1	6112	6112		1.8442	1.8442	1	232670			44641	35	25794	25795	54286	54286					0.09043497531638423
SQEWFSSR	8	Unmodified	_SQEWFSSR_					0	0	0			REV__ENSG00000147697|ENST00000276708|GSDMC	REV__ENSG00000147697|ENST00000276708|GSDMC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2984619140625	2	513.735606	1025.45666	0.37606	0.0001932	-0.28918	-0.00014856	0.086876	4.4632E-05	513.7352716474521	85.94	0.61738	86.024	85.726	86.343	0.084251					40	22	2	0	0	0	0.34131	1	22638	22638		12.532	3.1841	1	261600	+		44642	16403	25795	25796	54287	54287					-0.05505164147371033
SQFKGYFIFK	10	Unmodified	_SQFKGYFIFK_					0	0	0		ENST00000429866.1_1_3:195664216-195664672:+|nuORF;ENST00000470976.1_1_3:73045993-73110212:+|nuORF;ENST00000504656.1_1_5:289217-290334:-|nuORF;ENSG00000163605|ENST00000356692|PPP4R2	ENST00000429866.1_1_3:195664216-195664672:+|nuORF	ENST00000429866.1_1_3:195664216-195664672:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2290344238281	3	422.229008	1263.66519	0.21022	8.8761E-05	-0.10056	-4.2461E-05	0.10966	4.63E-05	422.2289199356901	54.135	1.0878	54.135	53.776	54.864	0					107	39	4	0	0	0	3.3863E-05	3	12856	12808;12856;12907		110.18	110.18	1	3575200			44643	5707	25796	25797	54288;54289;54290	54289					0.04390864436822994
SQFKGYFIFK	10	Unmodified	_SQFKGYFIFK_					0	0	0		ENST00000429866.1_1_3:195664216-195664672:+|nuORF;ENST00000470976.1_1_3:73045993-73110212:+|nuORF;ENST00000504656.1_1_5:289217-290334:-|nuORF;ENSG00000163605|ENST00000356692|PPP4R2	ENST00000429866.1_1_3:195664216-195664672:+|nuORF	ENST00000429866.1_1_3:195664216-195664672:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.840087890625	2	632.839874	1263.66519	0.59819	0.00037856	-0.23983	-0.00015177	0.35836	0.00022678	632.8395766170371	54.159	0.82431	54.159	53.884	54.708	0					70	29	4	0	0	0	0.0017481	2	12866	12816;12866		110.79	78.007	1	1349000			44644	5707	25796	25797	54291;54292	54292					0.04390864436822994
SQFKGYFIFK	10	Unmodified	_SQFKGYFIFK_					0	0	0		ENST00000429866.1_1_3:195664216-195664672:+|nuORF;ENST00000470976.1_1_3:73045993-73110212:+|nuORF;ENST00000504656.1_1_5:289217-290334:-|nuORF;ENSG00000163605|ENST00000356692|PPP4R2	ENST00000429866.1_1_3:195664216-195664672:+|nuORF	ENST00000429866.1_1_3:195664216-195664672:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.8399658203125	2	632.839874	1263.66519	0.48476	0.00030677	-0.18612	-0.00011778	0.29864	0.00018899	632.8397229567681	54.072	0.63797	54.135	53.902	54.54	0.063202					59	23	3	0	0	0	0.0011942	2	12786	12786;12831		118.21	84.765	1	1343500			44645	5707	25796	25797	54293;54294	54293					0.04390864436822994
SQFKGYFIFK	10	Unmodified	_SQFKGYFIFK_					0	0	0		ENST00000429866.1_1_3:195664216-195664672:+|nuORF;ENST00000470976.1_1_3:73045993-73110212:+|nuORF;ENST00000504656.1_1_5:289217-290334:-|nuORF;ENSG00000163605|ENST00000356692|PPP4R2	ENST00000429866.1_1_3:195664216-195664672:+|nuORF	ENST00000429866.1_1_3:195664216-195664672:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.22906494140625	3	422.229008	1263.66519	0.10883	4.5949E-05	-0.029488	-1.2451E-05	0.079337	3.3499E-05	422.22895871089577	54.058	1.0608	54.121	53.773	54.834	0.063202					114	39	4	0	0	0	0.0027997	2	12824	12824;12874		84.06	84.06	1	3878400			44646	5707	25796	25797	54295;54296	54295					0.04390864436822994
SQFKGYFIFK	10	Unmodified	_SQFKGYFIFK_					0	0	0		ENST00000429866.1_1_3:195664216-195664672:+|nuORF;ENST00000470976.1_1_3:73045993-73110212:+|nuORF;ENST00000504656.1_1_5:289217-290334:-|nuORF;ENSG00000163605|ENST00000356692|PPP4R2	ENST00000429866.1_1_3:195664216-195664672:+|nuORF	ENST00000429866.1_1_3:195664216-195664672:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.8396606445312	2	632.839874	1263.66519	0.67643	0.00042807	-0.42783	-0.00027075	0.2486	0.00015732	632.8394370631787	54.466	0.73059	54.45	54.17	54.9	-0.015923					73	25	4	0	0	0	0.00069047	2	12963	12911;12963		124.95	92.167	1	1593300			44647	5707	25796	25797	54297;54298	54298					0.04390864436822994
SQFKGYFIFK	10	Unmodified	_SQFKGYFIFK_					0	0	0		ENST00000429866.1_1_3:195664216-195664672:+|nuORF;ENST00000470976.1_1_3:73045993-73110212:+|nuORF;ENST00000504656.1_1_5:289217-290334:-|nuORF;ENSG00000163605|ENST00000356692|PPP4R2	ENST00000429866.1_1_3:195664216-195664672:+|nuORF	ENST00000429866.1_1_3:195664216-195664672:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2290954589844	3	422.229008	1263.66519	0.25343	0.00010701	-0.22627	-9.5537E-05	0.027166	1.147E-05	422.2288939706541	54.469	0.89426	54.453	54.085	54.98	-0.015919					100	31	4	0	0	0	0.071698	1	12891	12891		68.484	54.266	1	4169300			44648	5707	25796	25797	54299	54299					0.04390864436822994
SQFSGKITVK	10	Unmodified	_SQFSGKITVK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7726440429688	2	547.813856	1093.61316	0.35155	0.00019258	-0.23961	-0.00013126	0.11194	6.1323E-05	547.8136101029086	27.013	0.76435	27.013	26.644	27.408	0					72	26	4	0	0	0	0.26767	1	4540	4540		35.08	13.49	1	322670			44649	1049	25797	25798	54300	54300					0.07009701023071102
SQFSGKITVK	10	Unmodified	_SQFSGKITVK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.772705078125	2	547.813856	1093.61316	0.41195	0.00022567	-0.64697	-0.00035442	-0.23503	-0.00012875	547.8137502655346	26.997	0.84376	26.975	26.62	27.464	-0.021412					91	29	5	0	0	0	0.30441	1	4572	4572		22.775	7.5265	1	292980			44650	1049	25797	25798	54301	54301					0.07009701023071102
SQFSGKITVK	10	Unmodified	_SQFSGKITVK_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.772705078125	2	547.813856	1093.61316	0.49913	0.00027343	-0.34449	-0.00018872	0.15464	8.4716E-05	547.8135706915286	27.056	0.72731	27.045	26.711	27.438	-0.01156					65	25	4	0	0	0	0.26647	1	4571	4571		34.222	6.9985	1	298490			44651	1049	25797	25798	54302	54302					0.07009701023071102
SQFSPAVFVYK	11	Unmodified	_SQFSPAVFVYK_					0	0	0		ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1;ENST00000465856.5_1_6:26422331-26423690:+|nuORF;nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;nc|ENSG00000112763|Q7KYR7-5|BTN2A1;ENSG00000124508|ENST00000356709|BTN2A2;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;nc|ENSG00000291104|Q96KV6|BTN2A3P	ENSG00000112763|ENST00000312541|BTN2A1;ENSG00000124508|ENST00000356709|BTN2A2;nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.83447265625	2	636.834788	1271.65502	0.20952	0.00013343	-0.5534	-0.00035242	-0.34387	-0.00021899	636.8343074058332	59.41	0.51385	59.41	59.188	59.702	0					47	17	4	0	0	0	0.00078564	2	14446	14446;14496		99.864	63.358	1	775000			44652	2460;3161;13013	25798	25799	54303;54304	54303					0.030062567115919592
SQFSPAVFVYK	11	Unmodified	_SQFSPAVFVYK_					0	0	0		ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1;ENST00000465856.5_1_6:26422331-26423690:+|nuORF;nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;nc|ENSG00000112763|Q7KYR7-5|BTN2A1;ENSG00000124508|ENST00000356709|BTN2A2;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;nc|ENSG00000291104|Q96KV6|BTN2A3P	ENSG00000112763|ENST00000312541|BTN2A1;ENSG00000124508|ENST00000356709|BTN2A2;nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.8342895507812	2	636.834788	1271.65502	0.52247	0.00033273	-0.37945	-0.00024165	0.14302	9.1082E-05	636.8340422087585	59.276	0.55057	59.367	59.077	59.628	0.091305					46	19	3	0	0	0	1.2187E-06	2	14404	14404;14467		132.57	80.937	1	747970			44653	2460;3161;13013	25798	25799	54305;54306	54305					0.030062567115919592
SQFSPAVFVYK	11	Unmodified	_SQFSPAVFVYK_					0	0	0		ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1;ENST00000465856.5_1_6:26422331-26423690:+|nuORF;nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;nc|ENSG00000112763|Q7KYR7-5|BTN2A1;ENSG00000124508|ENST00000356709|BTN2A2;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;nc|ENSG00000291104|Q96KV6|BTN2A3P	ENSG00000112763|ENST00000312541|BTN2A1;ENSG00000124508|ENST00000356709|BTN2A2;nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.83349609375	2	636.834788	1271.65502	0.75256	0.00047926	-0.77776	-0.00049531	-0.025206	-1.6052E-05	636.8339389323141	59.38	0.70274	59.366	59.058	59.76	-0.014267					53	24	4	0	0	0	2.2063E-05	2	14424	14424;14477		112.95	69.174	1	741440			44654	2460;3161;13013	25798	25799	54307;54308	54307					0.030062567115919592
SQGASNGVREK	11	Unmodified	_SQGASNGVREK_					0	0	0			REV__ENSG00000198169|ENST00000292562|ZNF251	REV__ENSG00000198169|ENST00000292562|ZNF251	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.305908203125	2	566.788901	1131.56325	0.29297	0.00016605	-0.68459	-0.00038802	-0.39162	-0.00022197	566.7886235081361	31.848	0.99697	31.889	31.672	32.669	0.040989					64	35	2	0	0	0	0.27043	1	6090	6090		24.882	0	1	475250	+		44655	18804	25799	25800	54309	54309					0.002729663471427557
SQGASNGVREK	11	Unmodified	_SQGASNGVREK_					0	0	0			REV__ENSG00000198169|ENST00000292562|ZNF251	REV__ENSG00000198169|ENST00000292562|ZNF251	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	566.788901	1131.56325	0.4988	0.00028272	-0.78609	-0.00044555	-0.28729	-0.00016283	566.7884355357372	31.852	0.37639	31.895	31.737	32.113	0.042364	0.0030129	-8.7932E-05	NaN	24.882	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	531680	+		44656	18804	25799	25800							0.002729663471427557
SQGPISKPK	9	Unmodified	_SQGPISKPK_					0	0	0		nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;ENST00000463639.1_1_6:32945329-32946166:+|nuORF	nc|ENSG00000204256|P25440-3|BRD2	nc|ENSG00000204256|P25440-3|BRD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.274169921875	2	471.274367	940.53418	-0.24528	-0.0001156	0.026194	1.2345E-05	-0.21909	-0.00010325	471.2743913035559	13.752	0.59728	13.752	13.567	14.164	0					60	20	5	0	0	0	0.003929	2	504	504;553		94.909	41.505	1	1041500			44657	8208	25800	25801	54310;54311	54310					0.0615347378881097
SQGPISKPK	9	Unmodified	_SQGPISKPK_					0	0	0		nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;ENST00000463639.1_1_6:32945329-32946166:+|nuORF	nc|ENSG00000204256|P25440-3|BRD2	nc|ENSG00000204256|P25440-3|BRD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.27410888671875	2	471.274367	940.53418	-0.21771	-0.0001026	-0.016309	-7.686E-06	-0.23402	-0.00011029	471.2743452642674	13.802	0.61766	13.698	13.513	14.131	-0.10466					56	21	4	0	0	0	0.01251	2	529	529;577		75.571	39.064	1	1062900			44658	8208	25800	25801	54312;54313	54312					0.0615347378881097
SQGPISKPK	9	Unmodified	_SQGPISKPK_					0	0	0		nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2;ENST00000463639.1_1_6:32945329-32946166:+|nuORF	nc|ENSG00000204256|P25440-3|BRD2	nc|ENSG00000204256|P25440-3|BRD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.274169921875	2	471.274367	940.53418	-0.13907	-6.554E-05	0.062563	2.9485E-05	-0.076507	-3.6056E-05	471.27438593785223	13.827	0.63115	13.761	13.521	14.152	-0.066068					61	21	5	0	0	0	0.0044119	2	532	532;577		91.085	41.531	1	1092800			44659	8208	25800	25801	54314;54315	54314					0.0615347378881097
SQGRRPQL	8	Unmodified	_SQGRRPQL_					0	0	0			REV__ENST00000261023.7_2_2:187454800-187466828:+|nuORF	REV__ENST00000261023.7_2_2:187454800-187466828:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.3105773925781	2	471.267407	940.520262	-0.12783	-6.024E-05	-1.0893	-0.00051336	-1.2171	-0.0005736	471.2669986214513	14.025	0.23491	13.959	13.889	14.124	-0.066067					14	7	3	0	0	0	0.34367	1	635	635		4.3292	0	1	135580	+		44660	19585	25801	25802	54316	54316					0.047622410803683124
SQINLYISL	9	Unmodified	_SQINLYISL_					0	0	0			REV__nc|ENSG00000101180|Q9Y5N1-6|HRH3	REV__nc|ENSG00000101180|Q9Y5N1-6|HRH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2875366210938	2	525.795132	1049.57571	0.6402	0.00033661	0.3663	0.0001926	1.0065	0.00052921	525.7950741602593	45.036	0.35733	45.036	44.881	45.238	0					15	12	2	0	0	0	0.19686	1	10020	10020		14.405	0	1	242190	+		44661	22916	25802	25803	54317	54317					0.05290609757457787
SQIYFIFY	8	Unmodified	_SQIYFIFY_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.300537109375	2	540.773668	1079.53278	0.64292	0.00034767	0.067439	3.6469E-05	0.71035	0.00038414	540.7737409133927	87.78	0.4192	87.777	87.532	87.952	-0.0028381					31	23	2	0	0	0	0.30241	1	23108	23108		32.305	2.0807	1	93305			44662	7755	25803	25804	54318	54318					-0.0038016029996015277
SQIYRFSL	8	Unmodified	_SQIYRFSL_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2;NCOA2|p.T530Yfs*39|1|0.04|ENSG00000140396|chr8:70156778-70156779|-/G|frameshift_variant;NCOA2|p.N383Ifs*4|1|0.25|ENSG00000140396|chr8:70157217-70157217|T/-|frameshift_variant	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7398681640625	2	507.274367	1012.53418	0.14401	7.3054E-05	-0.19536	-9.9102E-05	-0.051349	-2.6048E-05	507.7759830103925	46.286	0.27544	46.351	46.279	46.555	0.065048					11	9	2	0	0	0	0.33293	1	10413	10413		6.2058	0	1	151070			44663	4299	25804	25805	54319	54319					0.028414737887942465
SQKAIFSA	8	Unmodified	_SQKAIFSA_					0	0	0		nc|ENSG00000147852|P98155-2|VLDLR;ENSG00000147852|ENST00000382100|VLDLR	nc|ENSG00000147852|P98155-2|VLDLR	nc|ENSG00000147852|P98155-2|VLDLR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.2457580566406	2	426.23471	850.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.896	1	79.867	79.367	80.367	-0.028931								0	0	0	0.37183	1	20724	20724		4.756	0	1				44664	4786	25805	25806	54320	54320					0.023658268346594014
SQKKQSLK	8	Unmodified	_SQKKQSLK_					0	0	0		nc|ENSG00000124232|Q9UBG7-2|RBPJL;ENSG00000124232|ENST00000343694|RBPJL	nc|ENSG00000124232|Q9UBG7-2|RBPJL	nc|ENSG00000124232|Q9UBG7-2|RBPJL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2690124511719	2	473.787641	945.56073	-0.10172	-4.8192E-05	-0.5434	-0.00025746	-0.64512	-0.00030565	473.7873019554129	19.167	0.50955	19.167	18.952	19.461	0					34	17	3	0	0	0	0.30795	1	2149	2149		30.637	0	1	82574			44665	3150	25806	25807	54321	54321					0.08577162680137462
SQKKQSLK	8	Unmodified	_SQKKQSLK_					0	0	0		nc|ENSG00000124232|Q9UBG7-2|RBPJL;ENSG00000124232|ENST00000343694|RBPJL	nc|ENSG00000124232|Q9UBG7-2|RBPJL	nc|ENSG00000124232|Q9UBG7-2|RBPJL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.2691345214844	2	473.787641	945.56073	0.10099	4.7849E-05	-1.1214	-0.0005313	-1.0204	-0.00048345	473.78711489130893	19.31	0.53897	19.194	19.005	19.544	-0.11592					30	18	2	0	0	0	0.30795	1	2199	2199		30.637	0	1	86431			44666	3150	25806	25807	54322	54322					0.08577162680137462
SQKKQSLK	8	Unmodified	_SQKKQSLK_					0	0	0		nc|ENSG00000124232|Q9UBG7-2|RBPJL;ENSG00000124232|ENST00000343694|RBPJL	nc|ENSG00000124232|Q9UBG7-2|RBPJL	nc|ENSG00000124232|Q9UBG7-2|RBPJL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2690734863281	2	473.787641	945.56073	0.12226	5.7926E-05	-1.1052	-0.00052365	-0.98298	-0.00046572	473.78703840136797	19.287	0.46775	19.231	19.017	19.485	-0.055693					26	15	2	0	0	0	0.27213	1	2183	2183		43.858	0	1	82933			44667	3150	25806	25807	54323	54323					0.08577162680137462
SQKLREISFK	10	Unmodified	_SQKLREISFK_					0	0	0		ENSG00000119684|ENST00000355774|MLH3;nc|ENSG00000119684|Q9UHC1-2|MLH3	ENSG00000119684|ENST00000355774|MLH3	ENSG00000119684|ENST00000355774|MLH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.859619140625	2	618.358962	1234.70337	0.36006	0.00022265	-0.82014	-0.00050714	-0.46007	-0.00028449	618.3586519414322	91.181	0.53757	91.181	90.995	91.533	0.00046539					83	35	3	0	0	0	0.41085	1	24188	24188		1.4819	0	1	1637800			44668	2896	25807	25808	54324	54324					0.09540750351493443
SQKNENEV	8	Unmodified	_SQKNENEV_					0	0	0		ENST00000586315.1_1_17:40646392-40646515:+|nuORF	ENST00000586315.1_1_17:40646392-40646515:+|nuORF	ENST00000586315.1_1_17:40646392-40646515:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.2691345214844	2	474.225071	946.435589	0.079778	3.7833E-05	-0.20161	-9.5608E-05	-0.12183	-5.7775E-05	474.2249544487463	19.177	0.78009	19.061	18.708	19.488	-0.11592					49	27	3	0	0	0	0.34198	1	2199	2199		10.824	10.824	1	101800			44669	12116	25808	25809	54325	54325					-0.039771742468929006
SQKNENEV	8	Unmodified	_SQKNENEV_					0	0	0		ENST00000586315.1_1_17:40646392-40646515:+|nuORF	ENST00000586315.1_1_17:40646392-40646515:+|nuORF	ENST00000586315.1_1_17:40646392-40646515:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2690734863281	2	474.225071	946.435589	0.043864	2.0801E-05	-0.11495	-5.4511E-05	-0.071084	-3.371E-05	474.22502695607085	19.096	0.68564	19.039	18.708	19.393	-0.057568					45	23	3	0	0	0	0.34039	1	2183	2183		15.847	5.7733	1	128270			44670	12116	25808	25809	54326	54326					-0.039771742468929006
SQKTTLSL	8	Unmodified	_SQKTTLSL_					0	0	0			REV__ENST00000260324.11_1_15:45981288-45981321:+|nuORF	REV__ENST00000260324.11_1_15:45981288-45981321:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.252685546875	2	439.2531	876.491647	-0.061094	-2.6836E-05	-0.86729	-0.00038096	-0.92838	-0.0004078	439.2525531477671	80.485	0.89249	80.55	80.241	81.133	0.065094					66	36	3	0	0	0	0.45942	1	20967	20967		2.5775	0	1	577220	+		44671	19578	25809	25810	54327	54327					0.04846078660580133
SQLAKTNIKS	10	Unmodified	_SQLAKTNIKS_					0	0	0			REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.818115234375	2	545.316763	1088.61897	0.55019	0.00030003	-0.15755	-8.5912E-05	0.39265	0.00021412	545.3167697948801	119.46	1.0496	119.49	118.98	120.03	0.027756					193	129	2	0	0	0	0.41085	1	30920	30920		1.4819	1.4819	1	38751	+		44672	19292	25810	25811	54328	54328					0.07820799534738399
SQLFLKPLQ	9	Unmodified	_SQLFLKPLQ_					0	0	0			REV__nc|nan|Q5SQH8-3|C6orf136	REV__nc|nan|Q5SQH8-3|C6orf136	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2931518554688	2	537.321317	1072.62808	0.47476	0.0002551	-0.39101	-0.0002101	0.083748	4.5E-05	537.3210574146086	68.187	0.38388	68.187	67.997	68.381	0					22	14	2	0	0	0	0.21538	1	17144	17144		20.415	10.341	1	229940	+		44673	23268	25811	25812	54329	54329					0.09467192891065679
SQLFSAKLH	9	Unmodified	_SQLFSAKLH_					0	0	0			REV__ENSG00000178764|ENST00000314393|ZHX2	REV__ENSG00000178764|ENST00000314393|ZHX2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.80029296875	2	515.787641	1029.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.576	1	54.576	54.076	55.076	0								0	0	0	0.19013	1	12970	12970		25.399	0	1		+		44674	18045	25812	25813	54330	54330					0.04713162680127425
SQLGIFISK	9	Unmodified	_SQLGIFISK_					0	0	0		ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.79241943359375	2	496.792392	991.570232	0.52823	0.00026242	-0.27356	-0.0001359	0.25468	0.00012652	496.7922053332023	51.353	1.2416	51.353	51.055	52.296	0					106	45	4	0	0	0	3.152E-11	3	11994	11945;11994;12043		193.01	68.054	1	5768300			44675	2948	25813	25814	54331;54332;54333	54332					0.0741093096565919
SQLGIFISK	9	Unmodified	_SQLGIFISK_					0	0	0		ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7926025390625	2	496.792392	991.570232	0.40911	0.00020324	-0.18509	-9.1952E-05	0.22402	0.00011129	496.79223793392254	51.368	1.1857	51.415	51.064	52.25	0.046577					106	43	4	0	0	0	6.889E-11	3	11944	11944;11991;12048		180.74	66.784	1	6123400			44676	2948	25813	25814	54334;54335;54336	54334					0.0741093096565919
SQLGIFISK	9	Unmodified	_SQLGIFISK_					0	0	0		ENSG00000120509|ENST00000239666|PDZD11;nc|ENSG00000120509|Q5EBL8-2|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	ENSG00000120509|ENST00000239666|PDZD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7924499511719	2	496.792392	991.570232	0.41492	0.00020613	-0.18294	-9.0882E-05	0.23198	0.00011525	496.79225974950555	51.411	1.0313	51.42	51.094	52.126	0.0095634					101	38	4	0	0	0	3.152E-11	3	11993	11947;11993;12044		193.01	57.144	1	5646700			44677	2948	25813	25814	54337;54338;54339	54338					0.0741093096565919
SQLGQFCCYCC	11	Unmodified	_SQLGQFCCYCC_					0	0	0			REV__ENST00000220931.10_1_8:102803112-102803181:-|nuORF	REV__ENST00000220931.10_1_8:102803112-102803181:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.3560791015625	2	627.724155	1253.43376	0.024242	1.5217E-05	3.2432	0.0020359	3.2675	0.0020511	627.7257302254756	67.018	0.30916	67.004	66.841	67.15	-0.014229					12	10	2	0	0	0	0.33324	1	16797	16797		1.1933	0.12188	1	66088	+		44678	19427	25814	25815	54340	54340					-0.18282333914680748
SQLHRKWA	8	Unmodified	_SQLHRKWA_					0	0	0			REV__nc|ENSG00000103154|Q7Z6G3-2|NECAB2	REV__nc|ENSG00000103154|Q7Z6G3-2|NECAB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.767333984375	2	513.2856	1024.55665	0.29027	0.00014899	2.3314	0.0011967	2.6217	0.0013457	513.2867252602473	69.983	0.48168	69.983	69.843	70.325	0					23	17	2	0	0	0	0.31934	1	17814	17814		24.674	8.8267	1	138320	+		44679	14355	25815	25816	54341	54341					0.045351179770932504
SQLQYYVP	8	Unmodified	_SQLQYYVP_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF	ENSG00000114374|ENST00000338981|USP9Y	ENSG00000114374|ENST00000338981|USP9Y	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.25323486328125	2	499.2531	996.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.22	1	104.23	103.73	104.73	0.0018463								0	0	0	0.37664	1	27687	27687		2.5775	0	1				44680	2560	25816	25817	54342	54342					-0.006739213394325816
SQLVIEAYK	9	Unmodified	_SQLVIEAYK_					0	0	0		nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	nc|ENSG00000187239|Q96RU3-4|FNBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2874755859375	2	525.795132	1049.57571	0.53865	0.00028322	0.66078	0.00034744	1.1994	0.00063066	525.7952823301052	44.864	0.4113	44.933	44.739	45.15	0.068569					21	14	2	0	0	0	0.24247	1	9964	9964		17.443	0.32975	1	189180			44681	7672	25817	25818	54343	54343					0.05290609757457787
SQMEQFPVK	9	Oxidation (M)	_SQM(Oxidation (M))EQFPVK_		SQM(1)EQFPVK		SQM(46)EQFPVK	0	0	1		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12|p.I1368Yfs*4|1|0.34|ENSG00000153827|chr2:229791954-229791955|-/A|frameshift_variant;ENST00000461189.1_1_2:230659893-230661399:-|nuORF	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2676391601562	2	555.268424	1108.5223	0.49619	0.00027552	-1.1609	-0.00064459	-0.66467	-0.00036907	555.2677312543246	29.625	0.63958	29.625	29.193	29.833	0					37	22	2	0	0	0	0.068498	1	5349	5349		46.022	31.184	1	312050			44682	5089	25818	25819	54344	54344		626			-0.027625110167036837
SQMEQFPVK	9	Oxidation (M)	_SQM(Oxidation (M))EQFPVK_		SQM(1)EQFPVK		SQM(73)EQFPVK	0	0	1		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12|p.I1368Yfs*4|1|0.34|ENSG00000153827|chr2:229791954-229791955|-/A|frameshift_variant;ENST00000461189.1_1_2:230659893-230661399:-|nuORF	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2681274414062	2	555.268424	1108.5223	0.35157	0.00019521	-0.93749	-0.00052056	-0.58592	-0.00032534	555.2678035826914	29.522	0.5591	29.534	29.244	29.803	0.012266					31	18	2	0	0	0	0.014058	1	5309	5309		73.196	44.115	1	209720			44683	5089	25818	25819	54345	54345		626			-0.027625110167036837
SQMEQFPVK	9	Oxidation (M)	_SQM(Oxidation (M))EQFPVK_		SQM(1)EQFPVK		SQM(61)EQFPVK	0	0	1		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12|p.I1368Yfs*4|1|0.34|ENSG00000153827|chr2:229791954-229791955|-/A|frameshift_variant;ENST00000461189.1_1_2:230659893-230661399:-|nuORF	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2682495117188	2	555.268424	1108.5223	0.045491	2.526E-05	-0.66998	-0.00037202	-0.62449	-0.00034676	555.2681053203347	29.564	0.49521	29.577	29.329	29.824	0.013474					35	16	3	0	0	0	0.027957	1	5299	5299		61.09	38.354	1	298930			44684	5089	25818	25819	54346	54346		626			-0.027625110167036837
SQMLAMNIEK	10	2 Oxidation (M)	_SQM(Oxidation (M))LAM(Oxidation (M))NIEK_		SQM(1)LAM(1)NIEK		SQM(42)LAM(42)NIEK	0	0	2		ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.7860107421875	2	598.786124	1195.55769	0.40774	0.00024415	-2.0962	-0.0012552	-1.6885	-0.001011	598.7857507529167	26.552	0.64226	26.514	26.153	26.795	-0.038671					69	22	5	0	0	0	0.12739	1	4404	4404		42.068	17.186	1	193640			44685	1887	25819	25820	54347	54347		226;227			-0.03226216551183825
SQNASLEAEFA	11	Unmodified	_SQNASLEAEFA_					0	0	0			REV__SPTAN1|p.W2169Cfs*90|1|0.11|ENSG00000197694|chr9:128626632-128626632|G/-|frameshift_variant	REV__SPTAN1|p.W2169Cfs*90|1|0.11|ENSG00000197694|chr9:128626632-128626632|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3314208984375	2	583.769842	1165.52513	0.20737	0.00012106	0.52421	0.00030602	0.73158	0.00042708	583.7697424613151	33.09	0.36819	33.09	32.865	33.233	0					18	12	2	0	0	0	0.32996	1	6321	6321		8.1555	0.8663	1	105620	+		44686	18757	25820	25821	54348	54348					-0.051009643581892306
SQNPRFYHK	9	Unmodified	_SQNPRFYHK_					0	0	0		ENST00000574458.1_1_17:7216077-7216212:-|nuORF;ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000573807.5_1_17:7216077-7216773:-|nuORF;ENSG00000132522|ENST00000380728|GPS2	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.7993774414062	2	588.799072	1175.58359	0.08157	4.8028E-05	0.3709	0.00021839	0.45247	0.00026641	588.7992456499817	14.962	0.97704	14.962	14.729	15.706	0					94	33	4	0	0	0	0.048637	3	852	852;904;947		53.404	53.404	1	2068000			44687	3645	25821	25822	54349;54350;54351	54349					0.0028218179761552165
SQNPRFYHK	9	Unmodified	_SQNPRFYHK_					0	0	0		ENST00000574458.1_1_17:7216077-7216212:-|nuORF;ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000573807.5_1_17:7216077-7216773:-|nuORF;ENSG00000132522|ENST00000380728|GPS2	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.7993774414062	2	588.799072	1175.58359	0.11294	6.6499E-05	0.32749	0.00019283	0.44043	0.00025933	588.7992625279876	15.087	0.87512	14.977	14.765	15.64	-0.10981					96	30	5	0	0	0	0.0073901	3	938	894;938;982		83.429	33.496	1	1705900			44688	3645	25821	25822	54352;54353;54354	54353					0.0028218179761552165
SQNPRFYHK	9	Unmodified	_SQNPRFYHK_					0	0	0		ENST00000574458.1_1_17:7216077-7216212:-|nuORF;ENST00000571697.5_1_17:7216077-7216449:-|nuORF;ENST00000573807.5_1_17:7216077-7216773:-|nuORF;ENSG00000132522|ENST00000380728|GPS2	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	ENST00000574458.1_1_17:7216077-7216212:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.7992553710938	2	588.799072	1175.58359	0.073549	4.3306E-05	0.36726	0.00021624	0.44081	0.00025955	588.7992250178764	15.119	0.85332	15.055	14.846	15.7	-0.064414					78	28	4	0	0	0	0.011693	3	949	903;949;996		76.825	45.74	1	1902700			44689	3645	25821	25822	54355;54356;54357	54356					0.0028218179761552165
SQNQNLPVAK	10	Unmodified	_SQNQNLPVAK_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.8143310546875	2	549.798737	1097.58292	0.16544	9.0956E-05	1.4468	0.00079545	1.6122	0.00088641	549.7991338246908	23.1	0.49253	23.1	22.815	23.308	0					38	16	3	0	0	0	0.37454	1	3329	3329		8.1555	0.54658	1	95384			44690	1009	25822	25823	54358	54358					0.03803342357878137
SQNTGIQRMR	10	Unmodified	_SQNTGIQRMR_					0	0	0			REV__nc|ENSG00000184788|Q86VE3-2|SATL1	REV__nc|ENSG00000184788|Q86VE3-2|SATL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.8072509765625	2	595.806571	1189.59859	0.21554	0.00012842	0.55134	0.00032849	0.76688	0.00045691	595.8069018352838	15.451	0.53372	15.451	15.257	15.791	0					38	17	3	0	0	0	0.39227	1	1037	1037		4.897	1.3005	1	76979	+		44691	18333	25823	25824	54359	54359					0.011373056032880413
SQNTGIQRMR	10	Unmodified	_SQNTGIQRMR_					0	0	0			REV__nc|ENSG00000184788|Q86VE3-2|SATL1	REV__nc|ENSG00000184788|Q86VE3-2|SATL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.8068237304688	2	595.806571	1189.59859	0.27946	0.0001665	0.42559	0.00025357	0.70505	0.00042007	595.8067681460581	15.614	0.44101	15.504	15.312	15.753	-0.10981					32	14	3	0	0	0	0.37454	1	1078	1078		8.1555	2.4237	1	105600	+		44692	18333	25823	25824	54360	54360					0.011373056032880413
SQPDVSLALK	10	Unmodified	_SQPDVSLALK_					0	0	0		ENST00000267202.6_1_12:123349912-123350128:-|nuORF	ENST00000267202.6_1_12:123349912-123350128:-|nuORF	ENST00000267202.6_1_12:123349912-123350128:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.30419921875	2	529.298039	1056.58152	0.37028	0.00019599	3.5599	0.0018843	3.9302	0.0020803	529.3000530799807	23.896	0.76847	23.896	23.48	24.248	0					66	26	3	0	0	0	0.35267	1	3518	3518		12.175	2.6308	1	303270			44693	9062	25824	25825	54361	54361					0.0554970826913177
SQPHGSPP	8	Unmodified	_SQPHGSPP_					0	0	0			REV__ENSG00000227059|ENST00000545940|ANHX	REV__ENSG00000227059|ENST00000545940|ANHX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.2425231933594	2	403.69321	805.371866	-0.25597	-0.00010333	0.88166	0.00035592	0.62569	0.00025259	403.69316435998337	18.531	0.50742	18.531	18.332	18.839	0					29	17	2	0	0	0	0.34367	1	2039	2039		4.3292	0	1	32991	+		44694	19122	25825	25826	54362	54362					-0.038604898933272125
SQPRHLRKW	9	Unmodified	_SQPRHLRKW_					0	0	0		ENST00000462139.1_1_1:247460900-247461185:-|nuORF	ENST00000462139.1_1_1:247460900-247461185:-|nuORF	ENST00000462139.1_1_1:247460900-247461185:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.56689453125	3	403.231746	1206.67341	-0.42838	-0.00017274	1.1454	0.00046186	0.71701	0.00028912	403.2313482528955	14.982	0.65746	14.918	14.618	15.275	-0.064414					63	22	4	0	0	0	0.3527	1	904	904		0.96228	0.18574	1	108140			44695	10753	25826	25827	54363	54363					0.07833856196839406
SQPSEYYLF	9	Unmodified	_SQPSEYYLF_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8316040039062	2	567.261122	1132.50769	0.08304	4.7105E-05	0.44641	0.00025323	0.52945	0.00030034	567.2611887313548	69.623	0.53008	69.623	69.339	69.869	0					49	18	3	0	0	0	0.090256	1	17618	17618		49.554	3.8547	1	526400			44696	8143	25827	25828	54364	54364					-0.05326259893195129
SQPSEYYLF	9	Unmodified	_SQPSEYYLF_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.279052734375	2	567.261122	1132.50769	0.2321	0.00013166	0.35212	0.00019975	0.58422	0.00033141	567.2612594116581	69.546	0.59805	69.612	69.312	69.91	0.066048					54	20	3	0	0	0	0.13296	1	17550	17550		33.445	4.3633	1	634280			44697	8143	25827	25828	54365	54365					-0.05326259893195129
SQPSEYYLF	9	Unmodified	_SQPSEYYLF_					0	0	0		ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	ENSG00000198853|ENST00000361226|RUSC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.83154296875	2	567.261122	1132.50769	0.1644	9.3258E-05	0.59249	0.0003361	0.75689	0.00042935	567.2612479662158	69.681	0.62036	69.659	69.293	69.913	-0.022087					66	22	4	0	0	0	0.090256	1	17618	17618		49.554	3.8547	1	583000			44698	8143	25827	25828	54366	54366					-0.05326259893195129
SQPSQEVQN	9	Unmodified	_SQPSQEVQN_					0	0	0			REV__nc|ENSG00000211784|A0A0B4J240|TRAV10	REV__nc|ENSG00000211784|A0A0B4J240|TRAV10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2644348144531	2	508.735803	1015.45705	0.37244	0.00018947	-4.1574	-0.002115	-3.785	-0.0019256	508.73236090319193	21.707	0.1596	21.606	21.498	21.657	-0.10034					7	5	2	0	0	0	0.25066	1	2923	2923		11.64	1.5664	1	36504	+		44699	23183	25828	25829	54367	54367					-0.05005789218182599
SQPTRGGRCHA	11	Unmodified	_SQPTRGGRCHA_					0	0	0			REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	REV__nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.283203125	2	585.283263	1168.55197	-0.0052687	-3.0837E-06	-1.0563	-0.00061821	-1.0615	-0.0006213	585.2831825603135	14.726	0.56756	14.621	14.368	14.935	-0.10466					60	19	5	0	0	0	0.47742	1	791	791		1.0715	0.38109	1	355470	+		44700	23151	25829	25830	54368	54368					-0.025561342279843302
SQPVDRCLSE	10	Unmodified	_SQPVDRCLSE_					0	0	0			REV__nc|ENSG00000203985|Q5T700-4|LDLRAD1	REV__nc|ENSG00000203985|Q5T700-4|LDLRAD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2794799804688	2	567.266413	1132.51827	0.5675	0.00032192	0.44663	0.00025336	1.0141	0.00057528	567.2669376308812	52.745	0.35429	52.795	52.553	52.907	0.050575					21	12	2	0	0	0	0.3001	1	12436	12436		20.415	2.0414	1	220670	+		44701	18914	25830	25831	54369	54369					-0.042686005103860225
SQPVDRCLSE	10	Unmodified	_SQPVDRCLSE_					0	0	0			REV__nc|ENSG00000203985|Q5T700-4|LDLRAD1	REV__nc|ENSG00000203985|Q5T700-4|LDLRAD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	567.266413	1132.51827	0.32474	0.00018421	0.56228	0.00031896	0.88702	0.00050317	567.7677121109127	52.766	0.3561	52.766	52.55	52.906	0	-0.075867	-0.00040689	NaN	20.415	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220620	+		44702	18914	25830	25831							-0.042686005103860225
SQPVDRCLSE	10	Unmodified	_SQPVDRCLSE_					0	0	0			REV__nc|ENSG00000203985|Q5T700-4|LDLRAD1	REV__nc|ENSG00000203985|Q5T700-4|LDLRAD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	567.266413	1132.51827	0.5675	0.00032192	0.44663	0.00025336	1.0141	0.00057528	567.2669376308812	52.745	0.35429	52.795	52.553	52.907	0.050575	-0.046198	-0.0005381	NaN	20.415	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220670	+		44703	18914	25830	25831							-0.042686005103860225
SQPYVYEIDF	10	Unmodified	_SQPYVYEIDF_					0	0	0		ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.794677734375	2	630.792786	1259.57102	-0.075541	-4.7651E-05	2.5348	0.0015989	2.4593	0.0015513	630.7945905967662	12.593	0.17588	12.525	12.434	12.61	-0.067671					14	5	3	0	0	0	0.41168	1	182	182		1.3295	0.25807	1	28192			44704	7474	25831	25832	54370	54370					-0.04838319175973993
SQPYVYEIDF	10	Unmodified	_SQPYVYEIDF_					0	0	0		ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	630.792786	1259.57102	0.0026473	1.6699E-06	3.184	0.0020085	3.1867	0.0020101	630.7949312349753	12.572	0.23156	12.572	12.468	12.699	0	0.042871	0.0002421	NaN	1.3295	15	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39802			44705	7474	25831	25832							-0.04838319175973993
SQPYVYEIDF	10	Unmodified	_SQPYVYEIDF_					0	0	0		ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	630.792786	1259.57102	-0.046678	-2.9444E-05	2.998	0.0018911	2.9513	0.0018617	630.7947178900722	12.587	0.16772	12.49	12.384	12.552	-0.096607	-0.03894	7.439E-06	NaN	1.3295	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42970			44706	7474	25831	25832							-0.04838319175973993
SQPYVYEIDF	10	Unmodified	_SQPYVYEIDF_					0	0	0		ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	630.792786	1259.57102	-0.075541	-4.7651E-05	2.5348	0.0015989	2.4593	0.0015513	630.7945905967662	12.593	0.17588	12.525	12.434	12.61	-0.067671	-0.0039309	-0.00057692	NaN	1.3295	14	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28192			44707	7474	25831	25832							-0.04838319175973993
SQQFSMQYI	9	Unmodified	_SQQFSMQYI_					0	0	0		ENSG00000115593|ENST00000419482|SMYD1	ENSG00000115593|ENST00000419482|SMYD1	ENSG00000115593|ENST00000419482|SMYD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.2616577148438	2	566.260599	1130.50665	0.34065	0.0001929	1.303	0.00073783	1.6436	0.00093073	566.2615200650483	21.237	0.57489	21.237	21.026	21.601	0					42	19	3	0	0	0	0.26031	1	2786	2786		3.5965	0	1	116390			44708	2661	25832	25833	54371	54371					-0.05338797533750039
SQQKAFFAK	9	Unmodified	_SQQKAFFAK_					0	0	0		nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	nc|ENSG00000135624|Q99832-4|CCT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3062744140625	2	527.787641	1053.56073	0.52017	0.00027454	-0.59077	-0.0003118	-0.070592	-3.7257E-05	527.787143139418	21.473	0.36862	21.424	21.265	21.633	-0.049377					17	12	2	0	0	0	0.24993	1	2850	2850		13.042	2.9685	1	33964			44709	3887	25833	25834	54372	54372					0.03609162680118061
SQQKVVITK	9	Unmodified	_SQQKVVITK_					0	0	0		ENSG00000165168|ENST00000378588|CYBB;nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.816650390625	2	515.816399	1029.61824	0.0754	3.8892E-05	-0.43637	-0.00022509	-0.36097	-0.0001862	515.8161276841034	15.437	0.52709	15.437	15.207	15.734	0					32	17	3	0	0	0	0.081077	1	1019	1019		41.347	26.39	1	112050			44710	5933	25834	25835	54373	54373					0.10462004885675924
SQQKVVITK	9	Unmodified	_SQQKVVITK_					0	0	0		ENSG00000165168|ENST00000378588|CYBB;nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.816162109375	2	515.816399	1029.61824	0.046625	2.405E-05	-0.45057	-0.00023241	-0.40394	-0.00020836	515.816190831781	15.513	0.49245	15.403	15.23	15.723	-0.10981					29	16	2	0	0	0	0.22755	1	1068	1068		19.626	12.996	1	139410			44711	5933	25834	25835	54374	54374					0.10462004885675924
SQQKVVITK	9	Unmodified	_SQQKVVITK_					0	0	0		ENSG00000165168|ENST00000378588|CYBB;nc|ENSG00000007952|Q9Y5S8-3|NOX1;ENSG00000007952|ENST00000372966|NOX1	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.8161010742188	2	515.816399	1029.61824	-0.045048	-2.3237E-05	-0.42887	-0.00022122	-0.47391	-0.00024445	515.8161301359858	15.481	0.45269	15.416	15.275	15.728	-0.064413					32	14	3	0	0	0	0.081077	1	1043	1043		41.347	22.974	1	128920			44712	5933	25834	25835	54375	54375					0.10462004885675924
SQQSGDGTFKS	11	Unmodified	_SQQSGDGTFKS_					0	0	0		ENST00000564148.1_1_16:15490031-15501966:+|nuORF;ENSG00000156968|ENST00000396385|MPV17L	ENST00000564148.1_1_16:15490031-15501966:+|nuORF	ENST00000564148.1_1_16:15490031-15501966:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7764282226562	2	571.259642	1140.50473	-0.037779	-2.1582E-05	-1.5261	-0.00087182	-1.5639	-0.00089341	571.2588282936974	25.612	0.52933	25.581	25.294	25.824	-0.031408					23	18	2	0	0	0	0.44828	1	4100	4100		4.897	0.141	1	50486			44713	5270	25835	25836	54376	54376					-0.05990135017987086
SQQTRWSKSY	10	Unmodified	_SQQTRWSKSY_					0	0	0		ENSG00000105509|ENST00000540069|HAS1;nc|ENSG00000105509|Q92839|HAS1	ENSG00000105509|ENST00000540069|HAS1	ENSG00000105509|ENST00000540069|HAS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.54461669921875	3	424.210676	1269.6102	-0.042826	-1.8167E-05	2.1526	0.00091314	2.1097	0.00089497	424.54488994408587	26.218	0.60664	26.195	25.923	26.53	-0.022236					41	21	4	0	0	0	0.40943	1	4293	4293		1.7423	0.28716	1	102820			44714	1989	25836	25837	54377	54377					-0.013821741017181921
SQQTRWSKSY	10	Unmodified	_SQQTRWSKSY_					0	0	0		ENSG00000105509|ENST00000540069|HAS1;nc|ENSG00000105509|Q92839|HAS1	ENSG00000105509|ENST00000540069|HAS1	ENSG00000105509|ENST00000540069|HAS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	424.210676	1269.6102	-0.20241	-8.5863E-05	1.7612	0.00074712	1.5588	0.00066126	424.5445071532562	26.129	0.42548	26.129	25.925	26.35	0	0.0029193	-0.00091791	NaN	1.7423	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48773			44715	1989	25836	25837							-0.013821741017181921
SQQTRWSKSY	10	Unmodified	_SQQTRWSKSY_					0	0	0		ENSG00000105509|ENST00000540069|HAS1;nc|ENSG00000105509|Q92839|HAS1	ENSG00000105509|ENST00000540069|HAS1	ENSG00000105509|ENST00000540069|HAS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	424.210676	1269.6102	-0.28039	-0.00011894	3.2141	0.0013634	2.9337	0.0012445	424.21291842891554	26.092	0.38723	26.053	25.902	26.29	-0.038671	-0.072483	0.00093104	NaN	1.7423	32	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99643			44716	1989	25836	25837							-0.013821741017181921
SQRRRRAAPLA	11	Unmodified	_SQRRRRAAPLA_					0	0	0			REV__ENST00000409781.1_1_2:87016528-87017758:-|nuORF	REV__ENST00000409781.1_1_2:87016528-87017758:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.3849487304688	2	641.384168	1280.75378	0.43559	0.00027938	-0.26749	-0.00017156	0.1681	0.00010782	641.3849270103111	93.215	0.88622	93.301	92.91	93.796	0.086678					218	77	4	0	0	0	0.46059	1	24893	24893		3.2813	0.28607	1	610510	+		44717	19725	25837	25838	54378	54378					0.12463717519881357
SQRSRVSFLK	10	Unmodified	_SQRSRVSFLK_					0	0	0		ENSG00000149596|ENST00000372980|JPH2	ENSG00000149596|ENST00000372980|JPH2	ENSG00000149596|ENST00000372980|JPH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2151794433594	3	403.235045	1206.6833	-0.34367	-0.00013858	-1.5284	-0.00061632	-1.8721	-0.0007549	403.23353639103647	15.525	1.0588	15.525	14.949	16.008	0					53	36	2	0	0	0	0.31538	1	1146	1146		8.9762	0.53194	1	44356			44718	4882	25838	25839	54379	54379					0.08822999411563615
SQRVPMLNR	9	Unmodified	_SQRVPMLNR_					0	0	0			REV__ENST00000392690.3_1_2:168725736-168725883:+|nuORF	REV__ENST00000392690.3_1_2:168725736-168725883:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.8043212890625	2	550.8033	1099.59205	0.14292	7.8721E-05	1.6621	0.0009155	1.805	0.00099422	550.8045026989896	15.503	0.64811	15.439	15.158	15.806	-0.064414					31	21	2	0	0	0	0.33276	1	1072	1072		3.9444	1.2092	1	65767	+		44719	20596	25839	25840	54380	54380					0.04623412442560948
SQRYICEEPL	10	Unmodified	_SQRYICEEPL_					0	0	0			REV__MED13|p.N1136Tfs*11|1|0.24|ENSG00000108510|chr17:61982596-61982596|T/-|frameshift_variant	REV__MED13|p.N1136Tfs*11|1|0.24|ENSG00000108510|chr17:61982596-61982596|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5502014160156	3	413.200901	1236.58087	0.17984	7.4312E-05	0.19661	8.1241E-05	0.37646	0.00015555	413.2009876065206	22.283	0.58804	22.182	21.86	22.448	-0.10034					28	21	2	0	0	0	0.32009	1	3148	3148		1.9064	0.45126	1	144040	+		44720	14600	25840	25841	54381	54381					-0.027954544422073013
SQSASKLKG	9	Unmodified	_SQSASKLKG_					0	0	0		nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	nc|ENSG00000099290|Q641Q2-2|WASHC2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.24017333984375	2	453.256174	904.497795	0.10987	4.9799E-05	-0.27858	-0.00012627	-0.16871	-7.6469E-05	453.2561111112707	21.938	0.65096	21.938	21.627	22.278	0					48	23	3	0	0	0	0.26031	1	2914	2914		3.5965	0	1	213390			44721	1481	25841	25842	54382	54382					0.0417259689210141
SQSEKVRLHW	10	Unmodified	_SQSEKVRLHW_					0	0	0		nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1;nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.7608642578125	2	635.338561	1268.66257	0.31995	0.00020328	0.8279	0.000526	1.1479	0.00072928	635.3391521314967	65.479	0.44455	65.479	65.268	65.713	0					26	15	2	0	0	0	0.31597	1	16345	16345		19.257	4.4187	1	184980			44722	2477	25842	25843	54383	54383					0.03898409031899064
SQSPVAREP	9	Unmodified	_SQSPVAREP_					0	0	0		ENST00000549412.5_2_12:49760692-49761130:+|nuORF	ENST00000549412.5_2_12:49760692-49761130:+|nuORF	ENST00000549412.5_2_12:49760692-49761130:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.5942077636719	2	485.751256	969.487959	0.10508	5.1042E-05	-0.29397	-0.0001428	-0.1889	-9.1756E-05	485.7511141368646	24.563	0.60447	24.531	24.286	24.89	-0.031408					30	20	2	0	0	0	0.25612	1	3747	3747		8.1555	0.8663	1	136470			44723	11786	25843	25844	54384	54384					0.0019940888670362256
SQTPRPEPR	9	Unmodified	_SQTPRPEPR_					0	0	0			REV__ENSG00000135090|ENST00000392533|TAOK3	REV__ENSG00000135090|ENST00000392533|TAOK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2821655273438	2	534.283254	1066.55196	0.091736	4.9013E-05	0.31892	0.00017039	0.41066	0.00021941	534.2828701897614	99.117	1.7874	99.117	98.405	100.19	0					553	222	3	0	0	0	0.31417	1	26441	26441		6.7232	0	1	846820	+		44724	15720	25844	25845	54385	54385					0.021341890436588073
SQVAGTTGF	9	Unmodified	_SQVAGTTGF_					0	0	0		ENST00000378203.5_1_10:15139259-15145374:+|nuORF	ENST00000378203.5_1_10:15139259-15145374:+|nuORF	ENST00000378203.5_1_10:15139259-15145374:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.7111511230469	2	434.213975	866.413397	0.17917	7.7798E-05	-1.4441	-0.00062703	-1.2649	-0.00054923	434.21361333347755	55.369	0.21062	55.44	55.324	55.535	0.070885					10	7	2	0	0	0	0.24913	1	13229	13229		4.3292	0	1	136890			44725	9953	25845	25846	54386	54386					-0.025153539246616674
SQVLHVSQQ	9	Unmodified	_SQVLHVSQQ_					0	0	0		ENST00000485934.1_1_9:116136757-116139050:-|nuORF;ENST00000238379.9_1_9:116136757-116137872:-|nuORF;ENST00000374180.3_1_9:116136757-116139093:-|nuORF	ENST00000485934.1_1_9:116136757-116139050:-|nuORF	ENST00000485934.1_1_9:116136757-116139050:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2903442382812	2	513.272355	1024.53016	0.20992	0.00010774	0.96141	0.00049347	1.1713	0.00060121	513.2729893425596	21.575	0.46004	21.526	21.344	21.804	-0.049377					20	15	2	0	0	0	0.23007	1	2841	2841		19.257	1.1106	1	66561			44726	8879	25846	25847	54387	54387					0.01887384295105221
SQVLTLPLML	10	Unmodified	_SQVLTLPLML_					0	0	0		ENSG00000214078|ENST00000397443|CPNE1;ENST00000483359.5_1_20:34220178-34252711:-|nuORF	ENSG00000214078|ENST00000397443|CPNE1	ENSG00000214078|ENST00000397443|CPNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.8310546875	2	557.83066	1113.64677	0.36625	0.00020431	0.9513	0.00053066	1.3175	0.00073497	557.8309405000713	90.678	0.5302	90.768	90.516	91.046	0.090668					84	40	3	0	0	0	0.39536	1	24050	24050		4.3292	0.38484	1	451390			44727	8377	25847	25848	54388	54388					0.09448986470647469
SQWPKKIS	8	Unmodified	_SQWPKKIS_					0	0	0		ENST00000460683.1_2_3:122439928-122440150:+|nuORF	ENST00000460683.1_2_3:122439928-122440150:+|nuORF	ENST00000460683.1_2_3:122439928-122440150:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.28729248046875	2	487.276909	972.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.796	1	12.729	12.229	13.229	-0.067496								0	0	0	0.37724	1	233	233		2.3027	0	1				44728	10734	25848	25849	54389	54389					0.0518977765142381
SQYEEESTDD	10	Unmodified	_SQYEEESTDD_					0	0	0		ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENSG00000110066|ENST00000304363|KMT5B	ENSG00000110066|ENST00000304363|KMT5B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.7324829101562	2	601.720212	1201.42587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.577	1	70.577	70.077	71.077	0								0	0	0	0.37157	1	17894	17894		5.7319	0.43497	1				44729	2293	25849	25850	54390	54390					-0.16678451833604413
SQYRTWHKL	9	Unmodified	_SQYRTWHKL_					0	0	0			REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.56915283203125	3	406.884123	1217.63054	-0.24784	-0.00010084	0.15877	6.4602E-05	-0.089072	-3.6242E-05	406.8841438358468	15.628	0.46756	15.518	15.285	15.753	-0.10981					38	15	3	0	0	0	0.2603	1	1085	1085		4.1895	0	1	93965	+		44730	15495	25850	25851	54391	54391					0.030430413487465557
SRAARALGKG	10	Unmodified	_SRAARALGKG_					0	0	0		ENST00000310512.3_1_7:100027461-100027629:+|nuORF	ENST00000310512.3_1_7:100027461-100027629:+|nuORF	ENST00000310512.3_1_7:100027461-100027629:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7854919433594	2	493.796332	985.578111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.346	1	38.346	37.846	38.846	0								0	0	0	0.35421	1	7986	7986		13.042	1.4022	1				44731	9311	25851	25852	54392	54392					0.08474503005811584
SRADQFEYVM	10	Oxidation (M)	_SRADQFEYVM(Oxidation (M))_		SRADQFEYVM(1)		SRADQFEYVM(79)	0	0	1		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	631.2799072265625	2	631.27952	1260.54449	0.20698	0.00013066	0.31987	0.00020193	0.52685	0.00033259	631.2797690103152	39.966	0.74332	39.966	39.644	40.388	0					70	26	4	0	0	0	0.013686	1	8473	8473		78.61	55.952	1	898520			44732	5750	25852	25853	54393	54393		680			-0.0753633133895164
SRADQFEYVM	10	Oxidation (M)	_SRADQFEYVM(Oxidation (M))_		SRADQFEYVM(1)		SRADQFEYVM(67)	0	0	1		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	631.2796020507812	2	631.27952	1260.54449	0.33631	0.0002123	0.057107	3.605E-05	0.39341	0.00024835	631.2796061326767	39.709	0.84335	39.802	39.332	40.176	0.09267					70	29	4	0	0	0	0.024627	1	8418	8418		66.683	44.025	1	944840			44733	5750	25852	25853	54394	54394		680			-0.0753633133895164
SRADQFEYVM	10	Oxidation (M)	_SRADQFEYVM(Oxidation (M))_		SRADQFEYVM(1)		SRADQFEYVM(71)	0	0	1		nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	nc|ENSG00000163882|P52434-3|POLR2H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.27978515625	2	631.27952	1260.54449	0.37845	0.00023891	0.13592	8.5805E-05	0.51437	0.00032471	631.2797223369814	39.683	0.83401	39.783	39.396	40.23	0.099407					63	29	3	0	0	0	0.020733	1	8396	8396		70.929	53.486	1	977910			44734	5750	25852	25853	54395	54395		680			-0.0753633133895164
SRAPVFLQF	9	Unmodified	_SRAPVFLQF_					0	0	0		ENSG00000182087|ENST00000356663|TMEM259;nc|ENSG00000182087|Q4ZIN3-2|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7985229492188	2	532.798009	1063.58147	0.65668	0.00034988	-0.037523	-1.9992E-05	0.61915	0.00032988	532.7979957334752	63.803	1.0402	63.803	63.443	64.483	0					81	37	4	0	0	0	0.0041491	2	15848	15801;15848		93.166	64.084	1	2338700			44735	7267	25853	25854	54396;54397	54397					0.052217530597772566
SRAPVFLQF	9	Unmodified	_SRAPVFLQF_					0	0	0		ENSG00000182087|ENST00000356663|TMEM259;nc|ENSG00000182087|Q4ZIN3-2|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7987060546875	2	532.798009	1063.58147	0.49072	0.00026145	0.10873	5.7933E-05	0.59945	0.00031939	532.7980548168367	63.69	0.94999	63.786	63.416	64.366	0.095722					81	33	4	0	0	0	0.0073901	1	15809	15809		83.429	54.347	1	2256000			44736	7267	25853	25854	54398	54398					0.052217530597772566
SRAPVFLQF	9	Unmodified	_SRAPVFLQF_					0	0	0		ENSG00000182087|ENST00000356663|TMEM259;nc|ENSG00000182087|Q4ZIN3-2|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	ENSG00000182087|ENST00000356663|TMEM259	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7984619140625	2	532.798009	1063.58147	0.67129	0.00035766	-0.003287	-1.7513E-06	0.668	0.00035591	532.7980305793958	63.799	0.91158	63.789	63.503	64.415	-0.0095329					80	32	4	0	0	0	0.0041491	2	15839	15791;15839		93.166	83.429	1	2199600			44737	7267	25853	25854	54399;54400	54400					0.052217530597772566
SRCLFYEVEV	10	Unmodified	_SRCLFYEVEV_					0	0	0		nc|ENSG00000131724|P78552-2|IL13RA1;ENSG00000131724|ENST00000371666|IL13RA1	nc|ENSG00000131724|P78552-2|IL13RA1	nc|ENSG00000131724|P78552-2|IL13RA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.8031616210938	2	622.802631	1243.59071	-0.056107	-3.4944E-05	0.78932	0.00049159	0.73322	0.00045665	622.8032026274515	53.552	0.49194	53.608	53.431	53.923	0.056255					39	18	3	0	0	0	0.38773	1	12679	12679		5.7319	0.83484	1	622970			44738	3584	25854	25855	54401	54401					-0.021342664368603437
SRCLFYEVEV	10	Unmodified	_SRCLFYEVEV_					0	0	0		nc|ENSG00000131724|P78552-2|IL13RA1;ENSG00000131724|ENST00000371666|IL13RA1	nc|ENSG00000131724|P78552-2|IL13RA1	nc|ENSG00000131724|P78552-2|IL13RA1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	622.802631	1243.59071	0.50843	0.00031665	0.51134	0.00031846	1.0198	0.00063512	622.8027930313135	53.663	0.50016	53.663	53.414	53.914	0	0.010269	-0.00016395	NaN	5.7319	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608790			44739	3584	25854	25855							-0.021342664368603437
SRDDHEYK	8	Unmodified	_SRDDHEYK_					0	0	0			REV__ENSG00000081148|ENST00000193391|IMPG2	REV__ENSG00000081148|ENST00000193391|IMPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2361450195312	2	525.23597	1048.45739	0.29264	0.0001537	-0.38141	-0.00020033	-0.088769	-4.6625E-05	525.235809070802	23.204	1.1394	23.204	22.594	23.734	0					72	39	3	0	0	0	0.43302	1	3339	3339		11.64	0.81637	1	151330	+		44740	13901	25855	25856	54402	54402					-0.06490369498351356
SRDDHEYK	8	Unmodified	_SRDDHEYK_					0	0	0			REV__ENSG00000081148|ENST00000193391|IMPG2	REV__ENSG00000081148|ENST00000193391|IMPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2362060546875	2	525.23597	1048.45739	0.2928	0.00015379	-0.78865	-0.00041423	-0.49586	-0.00026044	525.2357450219306	23.244	1.083	23.156	22.658	23.741	-0.08761					75	38	4	0	0	0	0.43302	2	3405	3405;3455		11.64	11.64	1	181000	+		44741	13901	25855	25856	54403;54404	54403					-0.06490369498351356
SRDDHEYK	8	Unmodified	_SRDDHEYK_					0	0	0			REV__ENSG00000081148|ENST00000193391|IMPG2	REV__ENSG00000081148|ENST00000193391|IMPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.235595703125	2	525.23597	1048.45739	0.47415	0.00024904	-0.80879	-0.0004248	-0.33464	-0.00017576	525.235709617733	23.248	1.1085	23.203	22.679	23.787	-0.044867					92	39	4	0	0	0	0.43302	1	3360	3360		11.64	4.3511	1	208250	+		44742	13901	25855	25856	54405	54405					-0.06490369498351356
SRDDHEYK	8	Unmodified	_SRDDHEYK_					0	0	0			REV__ENSG00000081148|ENST00000193391|IMPG2	REV__ENSG00000081148|ENST00000193391|IMPG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2357788085938	2	525.23597	1048.45739	0.47415	0.00024904	-0.80879	-0.0004248	-0.33464	-0.00017576	525.235709617733	23.248	1.1085	23.203	22.679	23.787	-0.044867					92	39	4	0	0	0	0.34167	1	3412	3412		11.64	11.64	1	208250	+		44743	13901	25855	25856	54406	54406					-0.06490369498351356
SRDEFPHVL	9	Unmodified	_SRDEFPHVL_					0	0	0		Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|176|2|anti-sense	Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|176|2|anti-sense	Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|176|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.743896484375	2	550.28018	1098.54581	0.20554	0.0001131	2.9129	0.0016029	3.1185	0.001716	550.2786062255656	15.941	0.45144	15.941	15.816	16.267	0					27	15	3	0	0	0	0.26251	1	1235	1235		0.6015	0	1	32312			44744	12374	25856	25857	54407	54407					0.0004767081213685742
SRDSPSSPTF	10	Unmodified	_SRDSPSSPTF_					0	0	0		nc|ENSG00000168334|Q702N8-3|XIRP1;ENSG00000168334|ENST00000340369|XIRP1	nc|ENSG00000168334|Q702N8-3|XIRP1	nc|ENSG00000168334|Q702N8-3|XIRP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7657470703125	2	540.751453	1079.48835	0.64128	0.00034677	-2.6633	-0.0014402	-2.022	-0.0010934	540.7500354324294	71.431	0.3783	71.404	71.128	71.506	-0.027275					17	13	2	0	0	0	0.30872	1	18161	18161		19.362	0.98885	1	162110			44745	6269	25857	25858	54408	54408					-0.04821216184109289
SREHIYIL	8	Unmodified	_SREHIYIL_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.8001098632812	2	515.787641	1029.56073	0.23364	0.00012051	0.60009	0.00030952	0.83372	0.00043002	515.7879475426994	53.857	1.2284	53.913	53.431	54.66	0.056255					104	46	3	0	0	0	0.33916	1	12951	12951		26.341	4.5946	1	1348400			44746	5305	25858	25859	54409	54409					0.04713162680127425
SREKRSVVS	9	Unmodified	_SREKRSVVS_					0	0	0		nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB	nc|ENSG00000160633|Q15424-2|SAFB	nc|ENSG00000160633|Q15424-2|SAFB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.298828125	2	524.298904	1046.58326	0.14862	7.7919E-05	-0.12765	-6.6929E-05	0.020962	1.099E-05	524.298856778847	12.64	0.34887	12.64	12.498	12.847	0					31	11	3	0	0	0	0.24848	1	178	178		13.906	0	1	193130			44747	5475	25859	25860	54410	54410					0.06182762077764892
SRELCNVNL	9	Unmodified	_SRELCNVNL_					0	0	0		ENSG00000176601|ENST00000392915|MAP3K19;nc|ENSG00000176601|Q56UN5-7|MAP3K19;nc|ENSG00000176601|Q56UN5-4|MAP3K19;nc|ENSG00000176601|Q56UN5-5|MAP3K19	ENSG00000176601|ENST00000392915|MAP3K19	ENSG00000176601|ENST00000392915|MAP3K19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8056640625	2	524.266216	1046.51788	0.64561	0.00033847	0.66537	0.00034883	1.311	0.0006873	524.2664984471829	55.1	0.77325	55.081	54.976	55.75	-0.019077					38	28	2	0	0	0	0.24848	1	13250	13250		13.906	0	1	409260			44748	6937	25860	25861	54411	54411					-0.0035197543959384348
SRELCNVNL	9	Unmodified	_SRELCNVNL_					0	0	0		ENSG00000176601|ENST00000392915|MAP3K19;nc|ENSG00000176601|Q56UN5-7|MAP3K19;nc|ENSG00000176601|Q56UN5-4|MAP3K19;nc|ENSG00000176601|Q56UN5-5|MAP3K19	ENSG00000176601|ENST00000392915|MAP3K19	ENSG00000176601|ENST00000392915|MAP3K19	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	524.266216	1046.51788	0.55233	0.00028957	0.24471	0.00012829	0.79704	0.00041786	524.7678985234352	55.236	0.31197	55.236	55.119	55.431	0	0.077725	-0.00025683	NaN	13.906	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259520			44749	6937	25860	25861							-0.0035197543959384348
SRFLNKQPY	9	Unmodified	_SRFLNKQPY_					0	0	0		nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENST00000484855.2_1_20:44526619-44527086:+|nuORF	nc|ENSG00000064601|P10619-2|CTSA	nc|ENSG00000064601|P10619-2|CTSA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.8113403320312	2	576.811648	1151.60874	0.4333	0.00024993	-0.12461	-7.1875E-05	0.30869	0.00017805	576.8114975125361	29.447	0.49065	29.447	29.169	29.659	0					32	17	2	0	0	0	0.17277	1	5274	5274		27.629	15.388	1	232360			44750	789	25861	25862	54412	54412					0.03900236600179596
SRFLNKQPY	9	Unmodified	_SRFLNKQPY_					0	0	0		nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENST00000484855.2_1_20:44526619-44527086:+|nuORF	nc|ENSG00000064601|P10619-2|CTSA	nc|ENSG00000064601|P10619-2|CTSA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8117065429688	2	576.811648	1151.60874	0.36043	0.0002079	0.10074	5.8109E-05	0.46118	0.00026601	576.8114795191668	29.356	0.51917	29.368	29.134	29.654	0.012266					37	17	3	0	0	0	0.23767	1	5266	5266		18.146	1.9972	1	185290			44751	789	25861	25862	54413	54413					0.03900236600179596
SRFLNKQPY	9	Unmodified	_SRFLNKQPY_					0	0	0		nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENST00000484855.2_1_20:44526619-44527086:+|nuORF	nc|ENSG00000064601|P10619-2|CTSA	nc|ENSG00000064601|P10619-2|CTSA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8117065429688	2	576.811648	1151.60874	0.065823	3.7968E-05	0.25324	0.00014607	0.31906	0.00018404	576.8115754849516	29.448	0.52545	29.461	29.248	29.773	0.013474					34	17	3	0	0	0	0.23767	1	5282	5282		18.146	4.2403	1	244270			44752	789	25861	25862	54414	54414					0.03900236600179596
SRFPDCRKCK	10	Unmodified	_SRFPDCRKCK_					0	0	0		nc|ENSG00000129810|Q5FBB7-7|SGO1;nc|ENSG00000129810|Q5FBB7-3|SGO1;nc|ENSG00000129810|Q5FBB7-2|SGO1;nc|ENSG00000129810|Q5FBB7|SGO1	nc|ENSG00000129810|Q5FBB7-7|SGO1	nc|ENSG00000129810|Q5FBB7-7|SGO1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.8802795410156	3	413.874353	1238.60123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.764	1	22.764	22.264	23.264	0								0	0	0	0.37044	1	3244	3244		5.7834	3.0482	1				44753	12696	25862	25863	54415	54415					-0.008525622633897001
SRGDFVVEY	9	Unmodified	_SRGDFVVEY_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2591552734375	2	536.258914	1070.50327	0.24071	0.00012908	-0.04311	-2.3118E-05	0.1976	0.00010597	536.2587705016607	46.254	0.67367	46.254	45.974	46.648	0					57	24	3	0	0	0	0.04299	2	10396	10396;10446		55.503	9.8031	1	2553500			44754	7421	25863	25864	54416;54417	54416					-0.029157243160852886
SRGDFVVEY	9	Unmodified	_SRGDFVVEY_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2595825195312	2	536.258914	1070.50327	0.089395	4.7939E-05	0.60424	0.00032403	0.69363	0.00037197	536.2590707315517	46.027	0.74205	46.087	45.819	46.562	0.059834					63	26	4	0	0	0	0.09758	2	10313	10313;10361		38.615	0.43918	1	2222100			44755	7421	25863	25864	54418;54419	54418					-0.029157243160852886
SRGDFVVEY	9	Unmodified	_SRGDFVVEY_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2589721679688	2	536.258914	1070.50327	0.55518	0.00029772	0.045365	2.4328E-05	0.60055	0.00032205	536.2588710343225	46.006	0.74337	46.071	45.811	46.555	0.065048					58	26	3	0	0	0	0.059067	2	10349	10300;10349		49.527	11.352	1	1920200			44756	7421	25863	25864	54420;54421	54421					-0.029157243160852886
SRGGPGGG	8	Unmodified	_SRGGPGGG_					0	0	0		ENSG00000182118|ENST00000366654|FAM89A;ENSG00000143621|ENST00000361891|ILF2	ENSG00000182118|ENST00000366654|FAM89A	ENSG00000182118|ENST00000366654|FAM89A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	643.7483520507812	1	644.311063	643.303787	0.046022	2.9653E-05	0.97792	0.00063008	1.0239	0.00065974	644.3116439968229	18.615	0.16803	18.557	18.432	18.6	-0.058174					6	5	2	0	0	0	0.34445	1	1983	1983		0	0	1	17468			44757	4534	25864	25865	54422	54422					-0.03213314753315899
SRGLQFILT	9	Unmodified	_SRGLQFILT_					0	0	0		nc|ENSG00000185760|Q9NR82-5|KCNQ5;nc|ENSG00000185760|Q9NR82-2|KCNQ5;ENSG00000185760|ENST00000370398|KCNQ5;nc|ENSG00000185760|Q9NR82-7|KCNQ5;nc|ENSG00000185760|Q9NR82-3|KCNQ5;nc|ENSG00000185760|Q9NR82-6|KCNQ5	nc|ENSG00000185760|Q9NR82-5|KCNQ5	nc|ENSG00000185760|Q9NR82-5|KCNQ5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8158569335938	2	517.803291	1033.59203	0.35641	0.00018455	0.37083	0.00019202	0.72724	0.00037657	517.8034065946696	58.808	0.65443	58.899	58.502	59.156	0.091301					39	22	3	0	0	0	0.1939	1	14209	14209		30.637	5.2372	1	1232800			44758	7556	25865	25866	54423	54423					0.07657735714224145
SRGRHVAFR	9	Unmodified	_SRGRHVAFR_					0	0	0		ENST00000548174.5_1_12:50794678-50796486:+|nuORF;ENST00000293618.12_1_12:50794651-50821555:+|nuORF;ENST00000548697.5_2_12:50794678-50806237:+|nuORF	ENST00000548174.5_1_12:50794678-50796486:+|nuORF	ENST00000548174.5_1_12:50794678-50796486:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.30615234375	2	543.307398	1084.60024	0.21728	0.00011805	-1.5465	-0.00084023	-1.3292	-0.00072218	543.3068680939962	13.806	0.53795	13.739	13.469	14.007	-0.066068					39	18	3	0	0	0	0.25988	1	563	563		3.9444	0	1	204120			44759	9166	25866	25867	54424	54424					0.06132727474209787
SRGRVWAMI	9	Unmodified	_SRGRVWAMI_					0	0	0		OCA2|p.F474Sfs*25|1|0.26|ENSG00000104044|chr15:27983427-27983427|A/-|frameshift_variant;nc|ENSG00000104044|Q04671-3|OCA2;nc|ENSG00000104044|Q04671-2|OCA2;ENSG00000104044|ENST00000354638|OCA2	OCA2|p.F474Sfs*25|1|0.26|ENSG00000104044|chr15:27983427-27983427|A/-|frameshift_variant	OCA2|p.F474Sfs*25|1|0.26|ENSG00000104044|chr15:27983427-27983427|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.86376953125	2	538.295111	1074.57567	0.44102	0.0002374	-0.40671	-0.00021893	0.034314	1.8471E-05	538.7962275597622	92.05	0.56166	92.05	91.77	92.331	0					53	36	2	0	0	0	0.24848	1	24405	24405		13.906	1.3745	1	86196			44760	1862	25867	25868	54425	54425					0.04136331276481542
SRHHGRVWTK	10	Unmodified	_SRHHGRVWTK_					0	0	0		ENST00000529958.1_1_11:6704370-6704496:-|nuORF	ENST00000529958.1_1_11:6704370-6704496:-|nuORF	ENST00000529958.1_1_11:6704370-6704496:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.8985290527344	3	421.898767	1262.67447	-0.13756	-5.8037E-05	-0.86253	-0.0003639	-1.0001	-0.00042194	421.8983754684761	16.59	0.66579	16.59	16.349	17.014	0					61	22	4	0	0	0	0.35637	1	1385	1385		7.0371	0	1	428160			44761	11609	25868	25869	54426	54426					0.0536407056574717
SRHLKFSKTSL	11	Unmodified	_SRHLKFSKTSL_					0	0	0		Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|16|2|sense	Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|16|2|sense	Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|16|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.26922607421875	3	435.254216	1302.74082	-0.20111	-8.7534E-05	-0.051876	-2.2579E-05	-0.25299	-0.00011011	435.25477959607474	17.071	0.25268	16.953	16.828	17.081	-0.11739					9	8	2	0	0	0	0.33025	1	1489	1489		9.2438	3.0094	1	23393			44762	12387	25869	25870	54427	54427					0.10155841617142869
SRHRFRNKI	9	Unmodified	_SRHRFRNKI_					0	0	0			REV__ENSG00000088386|ENST00000376503|SLC15A1	REV__ENSG00000088386|ENST00000376503|SLC15A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.23834228515625	3	405.239012	1212.69521	0.029306	1.1876E-05	-1.9463	-0.00078871	-1.917	-0.00077684	405.2385624516901	21.084	1.5948	21.084	20.594	22.189	0					186	56	6	0	0	0	0.22935	1	2845	2845		19.362	1.4988	1	8354000	+		44763	14007	25870	25871	54428	54428					0.09736660945418407
SRHWQKLRE	9	Unmodified	_SRHWQKLRE_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3390502929688	2	620.338895	1238.66324	0.41612	0.00025814	-0.3253	-0.0002018	0.090819	5.6339E-05	620.3386689173901	20.782	1.1013	20.729	20.387	21.488	-0.052912					88	38	3	0	0	0	0.35734	1	2838	2838		0	0	1	556220			44764	4126	25871	25872	54429	54429					0.05345248471599007
SRIHNRLQ	8	Unmodified	_SRIHNRLQ_					0	0	0			REV__ENSG00000197860|ENST00000381007|SGTB	REV__ENSG00000197860|ENST00000381007|SGTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2943725585938	2	512.293956	1022.57336	-0.0065959	-3.3791E-06	0.4414	0.00022612	0.4348	0.00022275	512.2941819264446	14.739	0.56756	14.634	14.368	14.935	-0.10466					44	19	4	0	0	0	0.46022	1	854	854		2.3027	0	1	204950	+		44765	18772	25872	25873	54430	54430					0.06297618863050047
SRKESLKQHV	10	Unmodified	_SRKESLKQHV_					0	0	0		ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15;nc|ENSG00000141956|P57071-5|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3698120117188	2	606.346386	1210.67822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.402	1	94.485	93.985	94.985	0.082779								0	0	0	0.37807	1	25179	25179		2.9952	0.93549	1				44766	4413	25873	25874	54431	54431					0.08130695548948097
SRKESYSVY	9	Unmodified	_SRKESYSVY_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENST00000609585.1_1_1:149399050-149399179:-|nuORF;ENST00000412169.1_1_1:120906105-120906168:+|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	ENSG00000185130|ENST00000377401|H2BC13;ENSG00000197903|ENST00000356950|H2BC12	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7774658203125	2	559.77747	1117.54039	0.26709	0.00014951	-0.019323	-1.0817E-05	0.24776	0.00013869	559.7774418164379	21.779	0.70071	21.779	21.459	22.16	0					63	25	3	0	0	0	0.10812	1	2964	2964		37.075	18.928	1	261320			44767	7510;8012	25874	25875	54432	54432					-0.013680527703172629
SRKESYSVY	9	Unmodified	_SRKESYSVY_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENST00000609585.1_1_1:149399050-149399179:-|nuORF;ENST00000412169.1_1_1:120906105-120906168:+|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	ENSG00000185130|ENST00000377401|H2BC13;ENSG00000197903|ENST00000356950|H2BC12	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.777587890625	2	559.77747	1117.54039	0.38459	0.00021528	-0.27432	-0.00015356	0.11027	6.1726E-05	559.7773246019934	21.879	0.60215	21.778	21.471	22.074	-0.10034					40	21	2	0	0	0	0.064268	2	2993	2948;2993		47.594	23.574	1	324320			44768	7510;8012	25874	25875	54433;54434	54434					-0.013680527703172629
SRKESYSVY	9	Unmodified	_SRKESYSVY_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENST00000609585.1_1_1:149399050-149399179:-|nuORF;ENST00000412169.1_1_1:120906105-120906168:+|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	ENSG00000185130|ENST00000377401|H2BC13;ENSG00000197903|ENST00000356950|H2BC12	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.7776489257812	2	559.77747	1117.54039	0.1845	0.00010328	0.084188	4.7127E-05	0.26869	0.0001504	559.7774510768409	21.785	0.77288	21.736	21.461	22.234	-0.049377					63	27	3	0	0	0	0.11201	2	2964	2916;2964		36.506	7.4246	1	283530			44769	7510;8012	25874	25875	54435;54436	54436					-0.013680527703172629
SRKLPRSITH	10	Unmodified	_SRKLPRSITH_					0	0	0		ENST00000514199.1_1_5:139944539-139945076:+|nuORF	ENST00000514199.1_1_5:139944539-139945076:+|nuORF	ENST00000514199.1_1_5:139944539-139945076:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8555908203125	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.482	1	92.482	91.982	92.982	0								0	0	0	0.37739	1	24597	24597		3.2813	0.28607	1				44770	11412	25875	25876	54437	54437					0.11018705648439209
SRKSKRRNS	9	Unmodified	_SRKSKRRNS_					0	0	0		ENSG00000129167|ENST00000682019|TPH1;nc|ENSG00000129167|P17752-2|TPH1	ENSG00000129167|ENST00000682019|TPH1	ENSG00000129167|ENST00000682019|TPH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2794189453125	2	559.828695	1117.64284	0.2918	0.00016336	-1.5712	-0.00087962	-1.2794	-0.00071627	559.8279881838611	21.677	0.10329	21.677	21.627	21.731	0					5	3	2	0	0	0	0.25843	1	2917	2917		5.7319	1.7875	1	43877			44771	3412	25876	25877	54438	54438					0.0887207781181587
SRKTFTETF	9	Unmodified	_SRKTFTETF_					0	0	0		nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L;nc|ENSG00000152061|Q5R372-2|RABGAP1L;RABGAP1L|p.L752*|1|0.15|ENSG00000152061|chr1:174811873-174811873|T/-|frameshift_variant	nc|ENSG00000152061|Q5R372-4|RABGAP1L	nc|ENSG00000152061|Q5R372-4|RABGAP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8024291992188	2	558.787838	1115.56112	0.28079	0.0001569	-2.4465	-0.0013671	-2.1657	-0.0012102	559.2858231384932	93.776	0.10828	93.863	93.796	93.904	0.08667					12	8	2	0	0	0	0.22188	1	24989	24989		20.454	5.6154	1	76450			44772	4997	25877	25878	54439	54439					0.007965376093125087
SRKTFTETF	9	Unmodified	_SRKTFTETF_					0	0	0		nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L;nc|ENSG00000152061|Q5R372-2|RABGAP1L;RABGAP1L|p.L752*|1|0.15|ENSG00000152061|chr1:174811873-174811873|T/-|frameshift_variant	nc|ENSG00000152061|Q5R372-4|RABGAP1L	nc|ENSG00000152061|Q5R372-4|RABGAP1L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	558.787838	1115.56112	0.37621	0.00021022	-3.7264	-0.0020823	-3.3502	-0.001872	559.2878124297239	93.709	0.15165	93.709	93.584	93.736	-0.00051117	-0.13898	0.00057845	NaN	20.454	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60177			44773	4997	25877	25878							0.007965376093125087
SRLAFQFAEL	10	Unmodified	_SRLAFQFAEL_					0	0	0			REV__ENSG00000172478|ENST00000388934|MAB21L4	REV__ENSG00000172478|ENST00000388934|MAB21L4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.27783203125	2	591.319306	1180.62406	0.24059	0.00014227	-2.0107	-0.001189	-1.7701	-0.0010467	591.3180468591534	28.981	0.32124	28.994	28.818	29.14	0.013474					16	11	2	0	0	0	0.31794	1	5116	5116		8.1555	0.54658	1	104610	+		44774	17716	25878	25879	54440	54440					0.040971033973846716
SRLEEKFLE	9	Unmodified	_SRLEEKFLE_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.79248046875	2	575.808771	1149.60299	0.34433	0.00019827	2.255	0.0012985	2.5993	0.0014967	575.8099213961901	73.162	0.54823	73.133	72.927	73.476	-0.029305					31	19	3	0	0	0	0.24467	1	18666	18666		17.113	3.2068	1	88882			44775	5979	25879	25880	54441	54441					0.03417093297889551
SRLHERLKSR	10	Unmodified	_SRLHERLKSR_					0	0	0			REV__ENST00000529808.1_1_11:119002295-119002978:+|nuORF	REV__ENST00000529808.1_1_11:119002295-119002978:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.8748779296875	2	641.378552	1280.74255	0.16947	0.00010869	1.319	0.00084601	1.4885	0.0009547	641.8823146062625	95.361	0.67701	95.361	95.229	95.906	0					115	68	3	0	0	0	0.31986	1	25606	25606		4.897	1.6157	1	107060	+		44776	17704	25880	25881	54442	54442					0.11340895425723829
SRLHYPLT	8	Unmodified	_SRLHYPLT_					0	0	0			REV__nc|ENSG00000285791|Q8IWW8-4|ADHFE1	REV__nc|ENSG00000285791|Q8IWW8-4|ADHFE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.28656005859375	2	493.774534	985.534515	0.34422	0.00016997	-1.7792	-0.00087851	-1.435	-0.00070854	493.7722152739924	22.174	0.10859	22.074	22.017	22.125	-0.10034					5	3	2	0	0	0	0.34353	1	3077	3077		4.756	0	1	22581	+		44777	16394	25881	25882	54443	54443					0.041168935086489
SRLKVLAKH	9	Unmodified	_SRLKVLAKH_					0	0	0			REV__nc|ENSG00000149782|Q01970-2|PLCB3	REV__nc|ENSG00000149782|Q01970-2|PLCB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8255615234375	2	526.340375	1050.6662	0.75278	0.00039622	0.095224	5.012E-05	0.84801	0.00044634	526.3401324168501	37.05	0.29887	37.143	36.898	37.197	0.093014					14	10	2	0	0	0	0.25526	1	7598	7598		7.9102	0	1	113530	+		44778	16483	25882	25883	54444	54444					0.14289123596404352
SRLMRENNNI	10	Unmodified	_SRLMRENNNI_					0	0	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.5820007324219	3	416.215544	1245.6248	-0.17587	-7.3199E-05	0.38996	0.00016231	0.21409	8.9107E-05	416.2156149669756	22.352	1.2326	22.352	21.94	23.173	0					106	42	4	0	0	0	0.31899	1	3346	3346		7.4771	0.84669	1	615700			44779	684	25883	25884	54445	54445					0.011815747747959904
SRLPARQLIQT	11	Unmodified	_SRLPARQLIQT_					0	0	0			REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF	REV__ENST00000558958.1_1_15:65449172-65477491:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8818359375	2	641.883136	1281.75172	0.13383	8.5903E-05	-0.76565	-0.00049146	-0.63182	-0.00040556	641.8824397631346	96.311	0.623	96.311	95.906	96.529	0					95	59	2	0	0	0	0.47825	1	25611	25611		0.96228	0.56156	1	111820	+		44780	17344	25884	25885	54446	54446					0.12211243991418996
SRLPRRISL	9	Unmodified	_SRLPRRISL_					0	0	0		ENSG00000120645|ENST00000538872|IQSEC3;nc|ENSG00000120645|Q9UPP2-2|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	ENSG00000120645|ENST00000538872|IQSEC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.779052734375	2	549.348732	1096.68291	0.25072	0.00013773	0.013586	7.4633E-06	0.26431	0.0001452	549.3488457578991	29.532	0.4341	29.546	29.39	29.824	0.013474					17	14	2	0	0	0	0.26031	1	5287	5287		3.5965	1.7523	1	98666			44781	2953	25885	25886	54447	54447					0.13843624482365158
SRLRRKMLS	9	Unmodified	_SRLRRKMLS_					0	0	0			REV__ENST00000399489.5_1_13:31036691-31036739:-|nuORF	REV__ENST00000399489.5_1_13:31036691-31036739:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.8499145507812	2	573.848042	1145.68153	0.19568	0.00011229	2.9636	0.0017006	3.1593	0.0018129	573.8496464382698	16.474	0.26003	16.411	16.298	16.558	-0.062534					9	8	2	0	0	0	0.35608	1	1365	1365		0.45834	0.057624	1	19870	+		44782	20691	25886	25887	54448	54448					0.1145166712194623
SRLRRKMLS	9	Unmodified	_SRLRRKMLS_					0	0	0			REV__ENST00000399489.5_1_13:31036691-31036739:-|nuORF	REV__ENST00000399489.5_1_13:31036691-31036739:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	573.848042	1145.68153	0.11018	6.3225E-05	2.5266	0.0014499	2.6368	0.0015131	573.8494477501928	16.389	0.1991	16.389	16.322	16.521	0	-0.011189	-0.000144	NaN	0.45834	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17101	+		44783	20691	25886	25887							0.1145166712194623
SRLRRKMLS	9	Unmodified	_SRLRRKMLS_					0	0	0			REV__ENST00000399489.5_1_13:31036691-31036739:-|nuORF	REV__ENST00000399489.5_1_13:31036691-31036739:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	573.848042	1145.68153	0.19568	0.00011229	2.9636	0.0017006	3.1593	0.0018129	573.8496464382698	16.474	0.26003	16.411	16.298	16.558	-0.062534	0.011189	0.00035753	NaN	0.45834	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19870	+		44784	20691	25886	25887							0.1145166712194623
SRMFEFFQR	9	Unmodified	_SRMFEFFQR_					0	0	0		ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.9017333984375	3	416.537847	1246.59171	-0.0394	-1.6412E-05	-3.1403	-0.0013081	-3.1797	-0.0013245	416.53656290818924	28.813	0.28205	28.813	28.67	28.952	0					12	9	2	0	0	0	0.25756	1	5077	5077		7.1017	3.2254	1	36505			44785	8083	25887	25888	54449	54449					-0.021720072772723142
SRMRKIGQPD	10	Unmodified	_SRMRKIGQPD_					0	0	0			REV__ENSG00000100629|ENST00000555265|CEP128	REV__ENSG00000100629|ENST00000555265|CEP128	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.3348999023438	2	594.319314	1186.62407	0.34035	0.00020228	-0.12114	-7.1996E-05	0.21921	0.00013028	594.3191796053804	24.008	0.81477	24.008	23.734	24.548	0					56	27	3	0	0	0	0.38773	1	3729	3729		5.7319	0	1	150310	+		44786	14218	25888	25889	54450	54450					0.038227801257107785
SRNLEFHE	8	Unmodified	_SRNLEFHE_					0	0	0		ENST00000593004.5_1_17:58756818-58797523:+|nuORF;ENST00000591371.5_1_17:58756818-58786882:+|nuORF;ENST00000589916.5_1_17:58756818-58885438:+|nuORF;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2489013671875	2	516.24888	1030.48321	0.046406	2.3957E-05	-0.24123	-0.00012454	-0.19483	-0.00010058	516.2487512246782	14.785	0.6992	14.785	14.649	15.348	0					56	24	3	0	0	0	0.4419	1	813	813		8.5933	0.68312	1	781360			44787	4370	25889	25890	54451	54451					-0.030814752560445413
SRNLEFHE	8	Unmodified	_SRNLEFHE_					0	0	0		ENST00000593004.5_1_17:58756818-58797523:+|nuORF;ENST00000591371.5_1_17:58756818-58786882:+|nuORF;ENST00000589916.5_1_17:58756818-58885438:+|nuORF;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.248779296875	2	516.24888	1030.48321	0.01376	7.1038E-06	-0.32851	-0.00016959	-0.31475	-0.00016249	516.2488061646651	14.91	1.009	14.8	14.303	15.312	-0.10982					83	35	4	0	0	0	0.4419	1	850	850		8.5933	0.68312	1	921990			44788	4370	25889	25890	54452	54452					-0.030814752560445413
SRNLEFHE	8	Unmodified	_SRNLEFHE_					0	0	0		ENST00000593004.5_1_17:58756818-58797523:+|nuORF;ENST00000591371.5_1_17:58756818-58786882:+|nuORF;ENST00000589916.5_1_17:58756818-58885438:+|nuORF;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.248779296875	2	516.24888	1030.48321	-0.072082	-3.7212E-05	-0.19989	-0.00010319	-0.27197	-0.00014041	516.2488688206862	14.939	0.69082	14.875	14.7	15.391	-0.064413					58	23	4	0	0	0	0.4419	1	839	839		8.5933	0.68312	1	905150			44789	4370	25889	25890	54453	54453					-0.030814752560445413
SRNLEFHE	8	Unmodified	_SRNLEFHE_					0	0	0		ENST00000593004.5_1_17:58756818-58797523:+|nuORF;ENST00000591371.5_1_17:58756818-58786882:+|nuORF;ENST00000589916.5_1_17:58756818-58885438:+|nuORF;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	516.24888	1030.48321	0.046406	2.3957E-05	-0.24123	-0.00012454	-0.19483	-0.00010058	516.2487512246782	14.785	0.6992	14.785	14.649	15.348	0	-0.035052	3.7987E-05	NaN	8.5933	56	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	781360			44790	4370	25889	25890							-0.030814752560445413
SRNLEFHE	8	Unmodified	_SRNLEFHE_					0	0	0		ENST00000593004.5_1_17:58756818-58797523:+|nuORF;ENST00000591371.5_1_17:58756818-58786882:+|nuORF;ENST00000589916.5_1_17:58756818-58885438:+|nuORF;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	516.24888	1030.48321	-0.072082	-3.7212E-05	-0.19989	-0.00010319	-0.27197	-0.00014041	516.2488688206862	14.939	0.69082	14.875	14.7	15.391	-0.064413	0.054951	8.0674E-05	NaN	8.5933	58	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	905150			44791	4370	25889	25890							-0.030814752560445413
SRNTTLGKH	9	Unmodified	_SRNTTLGKH_					0	0	0		ENST00000574928.5_1_16:3188909-3189179:+|nuORF	ENST00000574928.5_1_16:3188909-3189179:+|nuORF	ENST00000574928.5_1_16:3188909-3189179:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2903747558594	2	507.277972	1012.54139	-0.025141	-1.2753E-05	0.1442	7.315E-05	0.11906	6.0396E-05	507.27825204888813	14.693	0.52246	14.627	14.373	14.896	-0.066068					29	18	2	0	0	0	0.33508	1	870	870		3.5965	0	1	47198			44792	12042	25890	25891	54454	54454					0.03562206389244693
SRPGTATPAL	10	Unmodified	_SRPGTATPAL_					0	0	0		ENSG00000121898|ENST00000241305|CPXM2	ENSG00000121898|ENST00000241305|CPXM2	ENSG00000121898|ENST00000241305|CPXM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.61383056640625	2	485.769448	969.524344	0.19616	9.5289E-05	0.18087	8.7862E-05	0.37703	0.00018315	485.7698958718977	32.986	0.33383	32.986	32.811	33.145	0					22	11	3	0	0	0	0.31515	1	6347	6347		12.241	2.0573	1	83696			44793	3018	25891	25892	54455	54455					0.03836285783404492
SRPILMLRAPR	11	Unmodified	_SRPILMLRAPR_					0	0	0		nc|ENSG00000163534|Q96LA6-3|FCRL1;nc|ENSG00000163534|Q96LA6-2|FCRL1;ENSG00000163534|ENST00000368176|FCRL1;ENST00000489998.5_1_1:157765891-157772050:-|nuORF	nc|ENSG00000163534|Q96LA6-3|FCRL1	nc|ENSG00000163534|Q96LA6-3|FCRL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.267822265625	3	437.267691	1308.78124	0.17842	7.8016E-05	0.42325	0.00018507	0.60167	0.00026309	437.2678667037949	44.808	1.1647	44.877	44.463	45.628	0.068569					169	41	5	0	0	0	0.44351	1	10091	10091		5.5233	2.3893	1	4892200			44794	5697	25892	25893	54456	54456					0.13920484735899663
SRPILMLRAPR	11	Unmodified	_SRPILMLRAPR_					0	0	0		nc|ENSG00000163534|Q96LA6-3|FCRL1;nc|ENSG00000163534|Q96LA6-2|FCRL1;ENSG00000163534|ENST00000368176|FCRL1;ENST00000489998.5_1_1:157765891-157772050:-|nuORF	nc|ENSG00000163534|Q96LA6-3|FCRL1	nc|ENSG00000163534|Q96LA6-3|FCRL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2679138183594	3	437.267691	1308.78124	0.17291	7.5608E-05	0.40966	0.00017913	0.58257	0.00025474	437.2678696804243	44.898	1.2356	44.973	44.449	45.685	0.075047					200	45	5	0	0	0	0.46842	1	10052	10052		2.2527	0	1	4147200			44795	5697	25892	25893	54457	54457					0.13920484735899663
SRPILMLRAPR	11	Unmodified	_SRPILMLRAPR_					0	0	0		nc|ENSG00000163534|Q96LA6-3|FCRL1;nc|ENSG00000163534|Q96LA6-2|FCRL1;ENSG00000163534|ENST00000368176|FCRL1;ENST00000489998.5_1_1:157765891-157772050:-|nuORF	nc|ENSG00000163534|Q96LA6-3|FCRL1	nc|ENSG00000163534|Q96LA6-3|FCRL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	437.267691	1308.78124	0.17291	7.5608E-05	0.40966	0.00017913	0.58257	0.00025474	437.2678696804243	44.898	1.2356	44.973	44.449	45.685	0.075047	-0.03116	1.3403E-06	NaN	5.5233	200	45	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4147200			44796	5697	25892	25893							0.13920484735899663
SRPKAERFE	9	Unmodified	_SRPKAERFE_					0	0	0			REV__nc|ENSG00000072518|Q7KZI7-4|MARK2	REV__nc|ENSG00000072518|Q7KZI7-4|MARK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2794189453125	2	560.298904	1118.58326	0.3519	0.00019717	-0.9469	-0.00053055	-0.595	-0.00033338	560.2981959447386	21.48	1.0207	21.48	20.798	21.819	0					74	35	3	0	0	0	0.31417	1	2917	2917		6.7232	0	1	138480	+		44797	13762	25893	25894	54458	54458					0.028707620777595366
SRPKAERFE	9	Unmodified	_SRPKAERFE_					0	0	0			REV__nc|ENSG00000072518|Q7KZI7-4|MARK2	REV__nc|ENSG00000072518|Q7KZI7-4|MARK2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.298904	1118.58326	0.3519	0.00019717	-0.9469	-0.00053055	-0.595	-0.00033338	560.2981959447386	21.48	1.0207	21.48	20.798	21.819	0	0.075643	8.3959E-05	NaN	6.7232	74	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138480	+		44798	13762	25893	25894							0.028707620777595366
SRPKTVPSLS	10	Unmodified	_SRPKTVPSLS_					0	0	0			REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.3114624023438	2	536.31148	1070.60841	0.603	0.00032339	-0.65206	-0.0003497	-0.04906	-2.6311E-05	536.311226173545	31.984	0.72936	31.984	31.8	32.529	0					44	25	2	0	0	0	0.18709	1	6045	6045		34.222	1.3239	1	749960	+		44799	16723	25894	25895	54459	54459					0.07592816880332975
SRPPLLGF	8	Unmodified	_SRPPLLGF_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENSG00000151148|ENST00000342494|UBE3B;ENST00000538070.1_1_12:109958991-109971866:+|nuORF	ENSG00000009335|ENST00000348165|UBE3C;ENSG00000151148|ENST00000342494|UBE3B	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.76092529296875	2	443.760895	885.507237	0.21849	9.6956E-05	0.038213	1.6958E-05	0.2567	0.00011391	443.76084318654944	55.354	0.64555	55.354	55.061	55.707	0					42	23	2	0	0	0	0.28696	1	13237	13237		32.305	9.5692	1	969640			44800	406;4940	25895	25896	54460	54460					0.05990409968296717
SRPPLLGF	8	Unmodified	_SRPPLLGF_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENSG00000151148|ENST00000342494|UBE3B;ENST00000538070.1_1_12:109958991-109971866:+|nuORF	ENSG00000009335|ENST00000348165|UBE3C;ENSG00000151148|ENST00000342494|UBE3B	ENSG00000009335|ENST00000348165|UBE3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.78399658203125	2	443.760895	885.507237	0.37505	0.00016643	-0.13023	-5.7792E-05	0.24481	0.00010864	443.7607463208787	55.256	0.74822	55.327	55.055	55.804	0.070885					46	27	2	0	0	0	0.28088	1	13179	13179		39.957	18.211	1	1189700			44801	406;4940	25895	25896	54461	54461					0.05990409968296717
SRPPLLGF	8	Unmodified	_SRPPLLGF_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENSG00000151148|ENST00000342494|UBE3B;ENST00000538070.1_1_12:109958991-109971866:+|nuORF	ENSG00000009335|ENST00000348165|UBE3C;ENSG00000151148|ENST00000342494|UBE3B	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.76092529296875	2	443.760895	885.507237	0.28413	0.00012609	-0.029533	-1.3105E-05	0.2546	0.00011298	443.76077625605706	55.417	0.69536	55.398	55.129	55.824	-0.019081					44	25	2	0	0	0	0.25425	1	13259	13259		36.044	11.37	1	1252700			44802	406;4940	25895	25896	54462	54462					0.05990409968296717
SRPQIPSKGM	10	Unmodified	_SRPQIPSKGM_					0	0	0		ENST00000500118.2_1_8:6263479-6263713:-|nuORF	ENST00000500118.2_1_8:6263479-6263713:-|nuORF	ENST00000500118.2_1_8:6263479-6263713:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2827758789062	2	550.797683	1099.58081	0.20824	0.0001147	-0.14048	-7.7374E-05	0.067764	3.7324E-05	550.7979091526198	25.3	0.64809	25.244	24.972	25.62	-0.055931					39	22	3	0	0	0	0.41242	1	4077	4077		1.1933	0.39971	1	116220			44803	11264	25896	25897	54463	54463					0.035005903484488954
SRPSIRQSI	9	Unmodified	_SRPSIRQSI_					0	0	0		ENST00000476493.5_1_1:33099602-33116090:-|nuORF	ENST00000476493.5_1_1:33099602-33116090:-|nuORF	ENST00000476493.5_1_1:33099602-33116090:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.30126953125	2	522.301447	1042.58834	0.31069	0.00016227	-0.40437	-0.0002112	-0.093679	-4.8929E-05	522.301213028236	25.662	0.40993	25.662	25.413	25.823	0					25	13	3	0	0	0	0.23767	1	4118	4118		18.146	1.9972	1	227060			44804	10946	25897	25898	54464	54464					0.06875065940380409
SRPSIRQSI	9	Unmodified	_SRPSIRQSI_					0	0	0		ENST00000476493.5_1_1:33099602-33116090:-|nuORF	ENST00000476493.5_1_1:33099602-33116090:-|nuORF	ENST00000476493.5_1_1:33099602-33116090:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3013305664062	2	522.301447	1042.58834	0.19974	0.00010432	-0.43924	-0.00022941	-0.2395	-0.00012509	522.3010551100427	25.742	0.50927	25.72	25.388	25.897	-0.022236					26	17	3	0	0	0	0.23767	1	4147	4147		18.146	1.9972	1	232130			44805	10946	25897	25898	54465	54465					0.06875065940380409
SRPSIRQSI	9	Unmodified	_SRPSIRQSI_					0	0	0		ENST00000476493.5_1_1:33099602-33116090:-|nuORF	ENST00000476493.5_1_1:33099602-33116090:-|nuORF	ENST00000476493.5_1_1:33099602-33116090:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	522.301447	1042.58834	0.1323	6.9099E-05	-0.43851	-0.00022903	-0.30621	-0.00015994	522.3011477371903	25.721	0.43244	25.683	25.47	25.902	-0.038671	-0.005205	-1.8146E-05	NaN	18.146	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205110			44806	10946	25897	25898							0.06875065940380409
SRPSVLHLR	9	Unmodified	_SRPSVLHLR_					0	0	0			REV__ENST00000472435.1_1_1:44399917-44401801:+|nuORF	REV__ENST00000472435.1_1_1:44399917-44401801:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2579956054688	2	532.819807	1063.62506	0.34351	0.00018303	0.14136	7.5319E-05	0.48487	0.00025835	532.8197618200388	28.583	0.5677	28.583	28.277	28.845	0					32	19	2	0	0	0	0.25843	1	4952	4952		5.7319	5.7319	1	157580	+		44807	21368	25898	25899	54466	54466					0.09579362556928572
SRPSVLHLR	9	Unmodified	_SRPSVLHLR_					0	0	0			REV__ENST00000472435.1_1_1:44399917-44401801:+|nuORF	REV__ENST00000472435.1_1_1:44399917-44401801:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	532.819807	1063.62506	0.21252	0.00011324	0.10064	5.3621E-05	0.31316	0.00016686	532.8198252105742	28.561	0.45197	28.557	28.333	28.785	-0.0042572	-0.0053621	-2.2572E-05	NaN	5.7319	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226090	+		44808	21368	25898	25899							0.09579362556928572
SRPVAAKA	8	Unmodified	_SRPVAAKA_					0	0	0		ENSG00000173226|ENST00000310864|IQCB1;ENST00000401788.2_1_6:27979855-27980047:+|nuORF;nc|ENSG00000173226|Q15051-2|IQCB1	ENSG00000173226|ENST00000310864|IQCB1	ENSG00000173226|ENST00000310864|IQCB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	400.2416687011719	2	400.24287	798.471186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.39	1	99.441	98.941	99.941	0.050888								0	0	0	0.37724	1	26590	26590		2.3027	0	1				44809	6704	25899	25900	54467	54467					0.06388952791417069
SRPVDKPQV	9	Unmodified	_SRPVDKPQV_					0	0	0			REV__ENSG00000166428|ENST00000392593|PLD4	REV__ENSG00000166428|ENST00000392593|PLD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8133544921875	2	513.290548	1024.56654	0.18812	9.6558E-05	-2.4632	-0.0012643	-2.2751	-0.0011678	513.2890149072351	49.685	0.5809	49.706	49.457	50.038	0.020691					28	21	2	0	0	0	0.18123	1	11505	11505		27.629	6.0918	1	306630	+		44810	17319	25900	25901	54468	54468					0.055242611917947215
SRQMQCRL	8	Unmodified	_SRQMQCRL_					0	0	0			REV__ENST00000373622.9_1_20:35812753-35827546:+|nuORF	REV__ENST00000373622.9_1_20:35812753-35827546:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.25341796875	2	511.255128	1020.4957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.86	1	115.86	115.36	116.36	0								0	0	0	0.37277	1	30013	30013		4.3292	0	1		+		44811	20445	25901	25902	54469	54469					-0.01372478389009757
SRRAAAVKA	9	Unmodified	_SRRAAAVKA_					0	0	0		nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2855224609375	2	465.2856	928.556647	0.034668	1.613E-05	-0.018845	-8.7682E-06	0.015823	7.3622E-06	465.2855521975359	79.782	1.1898	79.843	79.353	80.543	0.061417					134	45	5	0	0	0	0.25989	1	20664	20664		14.838	0	1	5421200			44812	5215	25902	25903	54470	54470					0.08951117977073864
SRRCRRRRRR	10	Unmodified	_SRRCRRRRRR_					0	0	0		ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.6275634765625	3	486.627498	1456.86067	-0.13345	-6.4938E-05	0.21351	0.0001039	0.080063	3.8961E-05	486.6274879028573	98.988	0.97678	98.988	98.629	99.606	0					327	120	4	0	0	0	0.41512	1	26528	26528		0.69767	0	1	599050			44813	11797	25903	25904	54471	54471					0.150509892532682
SRRCRRRRRR	10	Unmodified	_SRRCRRRRRR_					0	0	0		ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	ENST00000550735.6_1_12:112280040-112280175:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	486.627498	1456.86067	0.057287	2.7878E-05	0.14746	7.1759E-05	0.20475	9.9637E-05	486.62743346547927	98.749	0.85439	98.8	98.525	99.379	0.050888	-0.094231	-4.3779E-05	NaN	0.69767	286	110	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	814370			44814	11797	25903	25904							0.150509892532682
SRRCSWLV	8	Unmodified	_SRRCSWLV_					0	0	0		ENST00000463835.5_1_1:2492021-2494709:+|nuORF;ENST00000463471.6_1_1:2491166-2493466:+|nuORF	ENST00000463835.5_1_1:2492021-2494709:+|nuORF	ENST00000463835.5_1_1:2492021-2494709:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.2179260253906	2	503.766186	1005.51782	0.33137	0.00016693	-2.0519	-0.0010337	-1.7206	-0.00086676	503.7653041842422	24.451	0.50017	24.379	24.055	24.555	-0.072559					34	16	3	0	0	0	0.34198	1	3716	3716		10.824	0	1	113060			44815	10766	25904	25905	54472	54472					0.015280693510703713
SRRCSWLV	8	Unmodified	_SRRCSWLV_					0	0	0		ENST00000463835.5_1_1:2492021-2494709:+|nuORF;ENST00000463471.6_1_1:2491166-2493466:+|nuORF	ENST00000463835.5_1_1:2492021-2494709:+|nuORF	ENST00000463835.5_1_1:2492021-2494709:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	503.766186	1005.51782	0.2546	0.00012826	-2.2713	-0.0011442	-2.0167	-0.0010159	503.76515702487194	24.321	0.67726	24.321	24.058	24.736	0	-0.047238	-0.00034401	NaN	10.824	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109290			44816	10766	25904	25905							0.015280693510703713
SRREEIWKF	9	Unmodified	_SRREEIWKF_					0	0	0			REV__BAP1|p.D74Efs*4|1|0.38|ENSG00000163930|chr3:52408507-52408507|A/-|frameshift_variant	REV__BAP1|p.D74Efs*4|1|0.38|ENSG00000163930|chr3:52408507-52408507|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.2431945800781	3	417.559528	1249.65676	0.27852	0.0001163	1.8433	0.00076968	2.1218	0.00088598	417.8945348124433	35.847	0.13097	35.93	35.823	35.954	0.082355					7	4	2	0	0	0	0.259	1	7207	7207		5.2969	2.4536	1	36129	+		44817	13123	25905	25906	54473	54473					0.04191310520195657
SRRIRLMEK	9	Unmodified	_SRRIRLMEK_					0	0	0			REV__ENST00000595288.5_1_19:7684558-7685401:-|nuORF	REV__ENST00000595288.5_1_19:7684558-7685401:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2831420898438	2	594.853324	1187.69209	0.574	0.00034145	1.2243	0.0007283	1.7983	0.0010697	594.8538065746577	38.714	0.27831	38.812	38.707	38.985	0.098648					11	9	2	0	0	0	0.25202	1	8102	8102		6.7232	0.99131	1	75015	+		44818	13834	25906	25907	54474	54474					0.10575649776365026
SRRKQHLL	8	Unmodified	_SRRKQHLL_					0	0	0		nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;ENST00000536066.1_1_12:2967806-2973707:-|nuORF	nc|ENSG00000111206|Q08050-2|FOXM1	nc|ENSG00000111206|Q08050-2|FOXM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7716064453125	2	519.319974	1036.6254	0.49552	0.00025733	4.0518	0.0021042	4.5474	0.0023615	519.3208999828282	62.495	0.10119	62.495	62.424	62.526	0					5	3	2	0	0	0	0.3408	1	15406	15406		14.838	0	1	69501			44819	2351	25907	25908	54475	54475					0.10854782276805963
SRRPAQQKRR	10	Unmodified	_SRRPAQQKRR_					0	0	0			REV__ENSG00000179981|ENST00000580243|TSHZ1	REV__ENSG00000179981|ENST00000580243|TSHZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8824462890625	2	641.881793	1281.74903	0.3939	0.00025284	0.91122	0.0005849	1.3051	0.00083773	641.8821386228421	94.232	1.0121	94.319	94.111	95.123	0.086678					144	83	2	0	0	0	0.40992	1	25345	25345		1.6526	1.6526	1	155330	+		44820	18098	25908	25909	54476	54476					0.11942833377111128
SRRPAQQKRR	10	Unmodified	_SRRPAQQKRR_					0	0	0			REV__ENSG00000179981|ENST00000580243|TSHZ1	REV__ENSG00000179981|ENST00000580243|TSHZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.881103515625	2	641.881793	1281.74903	0.36271	0.00023282	0.9566	0.00061402	1.3193	0.00084684	641.8822011881289	95.596	0.67054	95.673	95.261	95.932	0.077408					98	59	2	0	0	0	0.40992	1	25417	25417		1.6526	1.6526	1	132910	+		44821	18098	25908	25909	54477	54477					0.11942833377111128
SRRPAREL	8	Unmodified	_SRRPAREL_					0	0	0			REV__ENSG00000137825|ENST00000260386|ITPKA	REV__ENSG00000137825|ENST00000260386|ITPKA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.77764892578125	2	492.788507	983.562461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.98	1	39.073	38.573	39.573	0.09267								0	0	0	0.35663	1	8179	8179		11.64	0	1		+		44822	15886	25909	25910	54478	54478					0.07002216488751856
SRRPITDL	8	Unmodified	_SRRPITDL_					0	0	0			REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.76995849609375	2	479.277441	956.540328	-0.13145	-6.3001E-05	-0.045602	-2.1856E-05	-0.17705	-8.4857E-05	479.27731420778343	13.811	0.42312	13.707	13.538	13.961	-0.10466					19	14	2	0	0	0	0.34414	1	533	533		2.0598	0	1	36041	+		44823	17225	25910	25911	54479	54479					0.06031992020314192
SRRPITDL	8	Unmodified	_SRRPITDL_					0	0	0			REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	479.277441	956.540328	-0.149	-7.1411E-05	-0.80008	-0.00038346	-0.94908	-0.00045487	479.2775540191627	13.739	0.39536	13.739	13.597	13.992	0	0.006	-0.00059317	NaN	3.9444	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35287	+		44824	17225	25910	25911							0.06031992020314192
SRRPITDL	8	Unmodified	_SRRPITDL_					0	0	0			REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.277441	956.540328	-0.10385	-4.9775E-05	-0.32377	-0.00015518	-0.42763	-0.00020495	479.277332827019	13.819	0.4565	13.753	13.521	13.977	-0.066068	0.020255	-0.0001366	NaN	3.9444	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40002	+		44825	17225	25910	25911							0.06031992020314192
SRRPRRRP	8	Unmodified	_SRRPRRRP_					0	0	0			REV__ENST00000513185.1_1_5:98109622-98109781:+|nuORF	REV__ENST00000513185.1_1_5:98109622-98109781:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2701416015625	2	540.834114	1079.65368	0.10561	5.7119E-05	2.6925	0.0014562	2.7981	0.0015133	540.8348435737857	12.247	0.18129	12.179	12.1	12.281	-0.06806					12	6	3	0	0	0	0.34438	1	62	62		0.6015	0	1	23669	+		44826	21819	25911	25912	54480	54480					0.11703524976746849
SRRQDWIWC	9	Unmodified	_SRRQDWIWC_					0	0	0			REV__ENST00000487994.5_1_21:42609613-42615381:+|nuORF	REV__ENST00000487994.5_1_21:42609613-42615381:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.18927001953125	3	417.201346	1248.58221	-0.057149	-2.3843E-05	-0.22388	-9.3402E-05	-0.28103	-0.00011724	417.2009130562574	43.152	0.95053	43.152	42.49	43.441	0					61	34	4	0	0	0	0.31164	1	9534	9534		7.1017	0.90987	1	478700	+		44827	21570	25912	25913	54481	54481					-0.03213775562790033
SRRQRRHRKKV	11	Unmodified	_SRRQRRHRKKV_					0	0	0			REV__nc|ENSG00000144057|Q96JF0-2|ST6GAL2	REV__nc|ENSG00000144057|Q96JF0-2|ST6GAL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.29010009765625	3	502.981936	1505.92398	0.32379	0.00016286	-0.14803	-7.4456E-05	0.17576	8.8402E-05	502.9818284489833	43.296	0.51263	43.296	42.954	43.467	0					25	18	2	0	0	0	0.33334	1	9494	9494		1.2148	1.12	1	166010	+		44828	16220	25913	25914	54482	54482					0.19125253242145845
SRRQRRHRKKV	11	Unmodified	_SRRQRRHRKKV_					0	0	0			REV__nc|ENSG00000144057|Q96JF0-2|ST6GAL2	REV__nc|ENSG00000144057|Q96JF0-2|ST6GAL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	502.981936	1505.92398	0.098676	4.9632E-05	-0.41398	-0.00020822	-0.3153	-0.00015859	502.9816460652532	42.812	0.32261	42.903	42.8	43.123	0.091362	-0.19657	-0.00029435	NaN	1.2148	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151510	+		44829	16220	25913	25914							0.19125253242145845
SRRRAKDKAE	10	Unmodified	_SRRRAKDKAE_					0	0	0			REV__nc|ENSG00000075151|O43432|EIF4G3	REV__nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.846923828125	2	608.847084	1215.67962	0.60642	0.00036922	-0.060974	-3.7124E-05	0.54545	0.0003321	608.8470173384787	83.949	2.9587	84.026	83.243	86.202	0.077095					317	115	4	0	0	0	0.39935	1	22140	22140		3.5965	0	1	2064800	+		44830	13801	25914	25915	54483	54483					0.08040329637719879
SRRRKKRFRQE	11	Unmodified	_SRRRKKRFRQE_					0	0	0			REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.309814453125	3	516.309829	1545.90766	0.14202	7.3329E-05	0.19612	0.00010126	0.33815	0.00017459	516.3096866599957	95.955	2.2746	96.033	95.316	97.59	0.077415					663	215	5	0	0	0	0.48486	2	25775	25775;25923		0.094841	0.094841	1	2621100	+		44831	18473	25915	25916	54484;54485	54484					0.15654127285415598
SRRRPLSF	8	Unmodified	_SRRRPLSF_					0	0	0			REV__ENST00000228136.8_2_11:16760186-16766155:+|nuORF	REV__ENST00000228136.8_2_11:16760186-16766155:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7882385253906	2	509.798875	1017.5832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.251	1	53.251	52.751	53.751	0								0	0	0	0.34734	1	12561	12561		15.847	1.0089	1		+		44832	19444	25916	25917	54486	54486					0.07510806868424424
SRRRRRPHL	9	Unmodified	_SRRRRRPHL_					0	0	0		ENST00000397558.6_2_12:120427683-120428022:+|nuORF	ENST00000397558.6_2_12:120427683-120428022:+|nuORF	ENST00000397558.6_2_12:120427683-120428022:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2467041015625	3	411.921906	1232.74389	-0.076823	-3.1645E-05	1.4887	0.00061324	1.4119	0.0005816	411.9226001758574	24.974	0.38547	24.974	24.706	25.091	0					23	13	2	0	0	0	0.26169	1	3869	3869		2.2828	2.2828	1	46691			44833	10141	25917	25918	54487	54487					0.13682574305175876
SRRRRRRGPR	10	Unmodified	_SRRRRRRGPR_					0	0	0			REV__ENST00000496231.1_1_1:249152613-249153213:-|nuORF	REV__ENST00000496231.1_1_1:249152613-249153213:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.62432861328125	3	451.615476	1351.8246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.979	1	42.072	41.572	42.572	0.09333								0	0	0	0.37843	1	9091	9091		2.8433	0	1		+		44834	20781	25918	25919	54488	54488					0.16275855348044388
SRRRRRRQQRR	11	Unmodified	_SRRRRRRQQRR_					0	0	0		ENST00000397992.5_1_16:72984846-73092758:-|nuORF	ENST00000397992.5_1_16:72984846-73092758:-|nuORF	ENST00000397992.5_1_16:72984846-73092758:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.9954833984375	3	537.663489	1609.96864	0.48439	0.00026044	0.0012355	6.643E-07	0.48563	0.0002611	537.6635107784681	97.965	0.15276	97.958	97.851	98.004	-0.0068207					22	16	2	0	0	0	0.33352	1	26224	26224		0.08335	0	1	155270			44835	10151	25919	25920	54489	54489					0.18805077108186197
SRRRRRRQQRR	11	Unmodified	_SRRRRRRQQRR_					0	0	0		ENST00000397992.5_1_16:72984846-73092758:-|nuORF	ENST00000397992.5_1_16:72984846-73092758:-|nuORF	ENST00000397992.5_1_16:72984846-73092758:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.995361328125	3	537.663489	1609.96864	0.48095	0.00025859	0.32602	0.00017529	0.80697	0.00043388	537.6636577402177	98.045	0.078171	98.039	98.004	98.082	-0.0068283					10	7	2	0	0	0	0.33352	1	26260	26260		0.08335	0	1	176670			44836	10151	25919	25920	54490	54490					0.18805077108186197
SRSARLIRHR	10	Unmodified	_SRSARLIRHR_					0	0	0		ENST00000566849.5_1_15:43653273-43656590:-|nuORF;nc|ENSG00000140265|Q8IWY8-4|ZSCAN29;nc|ENSG00000140265|Q8IWY8-2|ZSCAN29;ENSG00000140265|ENST00000684362|ZSCAN29	ENST00000566849.5_1_15:43653273-43656590:-|nuORF	ENST00000566849.5_1_15:43653273-43656590:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.3768920898438	2	626.378886	1250.74322	0.3329	0.00020852	-1.6318	-0.0010221	-1.2989	-0.00081361	626.378010369002	40.232	1.2564	40.232	39.294	40.55	0					76	45	3	0	0	0	0.41585	1	8542	8542		1.3295	0	1	280110			44837	4290	25920	25921	54491	54491					0.12787734865469247
SRSELRKV	8	Unmodified	_SRSELRKV_					0	0	0		nc|ENSG00000127152|Q9C0K0-2|BCL11B;ENSG00000127152|ENST00000357195|BCL11B	nc|ENSG00000127152|Q9C0K0-2|BCL11B	nc|ENSG00000127152|Q9C0K0-2|BCL11B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7908630371094	2	487.790715	973.566878	0.29402	0.00014342	0.38023	0.00018547	0.67426	0.0003289	487.790789876972	74.046	2.9193	74.046	73.191	76.11	0					194	103	2	0	0	0	0.44734	1	18859	18859		6.7232	0.51738	1	5545500			44838	3307	25921	25922	54492	54492					0.07903680911658739
SRSELRKV	8	Unmodified	_SRSELRKV_					0	0	0		nc|ENSG00000127152|Q9C0K0-2|BCL11B;ENSG00000127152|ENST00000357195|BCL11B	nc|ENSG00000127152|Q9C0K0-2|BCL11B	nc|ENSG00000127152|Q9C0K0-2|BCL11B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.79095458984375	2	487.790715	973.566878	0.37224	0.00018158	0.20913	0.00010201	0.58138	0.00028359	487.79069538336256	74.179	3.0113	74.148	73.152	76.163	-0.030655					175	109	2	0	0	0	0.44734	1	19216	19216		6.7232	0.51738	1	5822500			44839	3307	25921	25922	54493	54493					0.07903680911658739
SRSFCWCL	8	Unmodified	_SRSFCWCL_					0	0	0			REV__ENST00000466411.1_1_7:73241946-73243545:+|nuORF	REV__ENST00000466411.1_1_7:73241946-73243545:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.29071044921875	2	501.220223	1000.42589	0.40657	0.00020378	-1.1152	-0.00055895	-0.70861	-0.00035517	501.2197130008045	76.83	1.142	76.83	76.252	77.394	0					56	41	2	0	0	0	0.34131	1	19830	19830		7.9102	0	1	149840	+		44840	21287	25922	25923	54494	54494					-0.07430357057637593
SRSFCWCL	8	Unmodified	_SRSFCWCL_					0	0	0			REV__ENST00000466411.1_1_7:73241946-73243545:+|nuORF	REV__ENST00000466411.1_1_7:73241946-73243545:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2908020019531	2	501.220223	1000.42589	0.28624	0.00014347	-1.1066	-0.00055466	-0.82039	-0.00041119	501.219834492333	76.847	1.0228	76.9	76.289	77.312	0.053413					48	36	2	0	0	0	0.34131	1	19784	19784		7.9102	0	1	97660	+		44841	21287	25922	25923	54495	54495					-0.07430357057637593
SRSHPIPNF	9	Unmodified	_SRSHPIPNF_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2932739257812	2	527.775065	1053.53558	0.44735	0.0002361	1.8942	0.00099969	2.3415	0.0012358	527.7739856993098	99.256	0.589	99.249	98.87	99.459	-0.006897					138	75	2	0	0	0	0.25066	1	26573	26573		11.64	2.2929	1	156490	+		44842	16560	25923	25924	54496	54496					0.010951078775633505
SRSHRLSN	8	Unmodified	_SRSHRLSN_					0	0	0		ENST00000398576.6_1_13:46700327-46700486:-|nuORF	ENST00000398576.6_1_13:46700327-46700486:-|nuORF	ENST00000398576.6_1_13:46700327-46700486:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.27740478515625	2	478.754664	955.494775	0.18195	8.711E-05	1.3283	0.00063593	1.5103	0.00072304	478.7548815920563	75.871	0.16006	75.924	75.808	75.968	0.053413					7	5	2	0	0	0	0.34272	1	19495	19495		7.9102	2.1497	1	89796			44843	10166	25924	25925	54497	54497					0.015247665579408931
SRSKLDKTK	9	Unmodified	_SRSKLDKTK_					0	0	0			REV__CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant	REV__CASP8AP2|p.Q1780Pfs*8|1|0.04|ENSG00000118412|chr6:89868628-89868629|-/CT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8170166015625	2	531.81693	1061.61931	0.08187	4.354E-05	-0.95169	-0.00050613	-0.86982	-0.00046259	531.8169976703119	81.396	1.1136	81.465	81.097	82.211	0.068985					184	52	6	0	0	0	0.31417	1	21254	21254		6.7232	2.7788	1	1960300	+		44844	13137	25925	25926	54498	54498					0.0909621925461579
SRSKRRHRTV	10	Unmodified	_SRSKRRHRTV_					0	0	0		ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.883056640625	2	641.881793	1281.74903	0.3939	0.00025284	0.91122	0.0005849	1.3051	0.00083773	641.8821386228421	94.232	1.0121	94.319	94.111	95.123	0.086678					144	83	2	0	0	0	0.40262	1	25277	25277		2.9952	1.3426	1	155330			44845	6731	25926	25927	54499	54499					0.11942833377111128
SRSKRRHRTV	10	Unmodified	_SRSKRRHRTV_					0	0	0		ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	ENSG00000173578|ENST00000309285|XCR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.88330078125	2	641.881793	1281.74903	0.36271	0.00023282	0.9566	0.00061402	1.3193	0.00084684	641.8822011881289	95.596	0.67054	95.673	95.261	95.932	0.077408					98	59	2	0	0	0	0.41242	1	25586	25586		1.1933	0	1	132910			44846	6731	25926	25927	54500	54500					0.11942833377111128
SRSKVGPR	8	Unmodified	_SRSKVGPR_					0	0	0		ENST00000467160.1_1_19:19757877-19758222:-|nuORF	ENST00000467160.1_1_19:19757877-19758222:-|nuORF	ENST00000467160.1_1_19:19757877-19758222:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.764404296875	2	443.764501	885.514448	0.19845	8.8066E-05	0.08061	3.5772E-05	0.27906	0.00012384	443.76439495983635	69.327	2.4077	69.327	67.97	70.378	0					220	88	4	0	0	0	0.46022	1	17594	17594		2.3027	0	1	1186000			44847	10821	25927	25928	54501	54501					0.06711142568713058
SRSKVGPR	8	Unmodified	_SRSKVGPR_					0	0	0		ENST00000467160.1_1_19:19757877-19758222:-|nuORF	ENST00000467160.1_1_19:19757877-19758222:-|nuORF	ENST00000467160.1_1_19:19757877-19758222:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.7645568847656	2	443.764501	885.514448	0.13375	5.9355E-05	0.08747	3.8816E-05	0.22122	9.8171E-05	443.76441849704605	69.042	1.9822	69.114	68.408	70.39	0.071945					172	71	3	0	0	0	0.46022	1	17545	17545		2.3027	0	1	1310300			44848	10821	25927	25928	54502	54502					0.06711142568713058
SRSLRSTVL	9	Unmodified	_SRSLRSTVL_					0	0	0		nc|ENSG00000078699|O43439-3|CBFA2T2	nc|ENSG00000078699|O43439-3|CBFA2T2	nc|ENSG00000078699|O43439-3|CBFA2T2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2737731933594	2	509.803823	1017.59309	0.39356	0.00020064	-0.37695	-0.00019217	0.016615	8.4706E-06	509.80358437289414	79.412	1.734	79.383	79.104	80.838	-0.028923					138	64	3	0	0	0	0.24471	1	20695	20695		17.113	17.113	1	1224400			44849	12594	25928	25929	54503	54503					0.08499950083125896
SRSPASSGKGP	11	Unmodified	_SRSPASSGKGP_					0	0	0			REV__ENST00000355803.8_1_16:1376147-1376570:+|nuORF	REV__ENST00000355803.8_1_16:1376147-1376570:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2484741210938	2	515.767437	1029.52032	-0.11617	-5.9919E-05	0.32992	0.00017016	0.21374	0.00011024	515.7676766018692	14.485	0.57681	14.418	14.152	14.728	-0.066068					26	20	2	0	0	0	0.33175	1	748	748		4.897	1.3005	1	62152	+		44850	20195	25929	25930	54504	54504					0.006741962897194753
SRSPHKRKRN	10	Unmodified	_SRSPHKRKRN_					0	0	0		ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3687744140625	2	633.368518	1264.72248	0.53834	0.00034097	0.025525	1.6167E-05	0.56387	0.00035714	633.3684116178885	85.58	1.5522	85.58	85.069	86.621	0					281	60	5	0	0	0	0.38773	1	22481	22481		5.7319	0	1	6556300			44851	6285	25930	25931	54505	54505					0.10071144485800687
SRSPHKRKRN	10	Unmodified	_SRSPHKRKRN_					0	0	0		ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3688354492188	2	633.368518	1264.72248	0.54454	0.00034489	0.1656	0.00010489	0.71014	0.00044978	633.3685429155636	85.593	2.7697	85.677	83.932	86.702	0.084251					376	108	5	0	0	0	0.38773	2	22554	22554;22605		5.7319	0	1	7238600			44852	6285	25930	25931	54506;54507	54506					0.10071144485800687
SRSPHKRKRN	10	Unmodified	_SRSPHKRKRN_					0	0	0		ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3690795898438	2	633.368518	1264.72248	0.62776	0.0003976	0.79044	0.00050064	1.4182	0.00089824	633.3691499557219	92.002	1.6435	92.002	91.452	93.096	0.00046539					192	117	2	0	0	0	0.41085	1	24661	24661		1.4819	0	1	272470			44853	6285	25930	25931	54508	54508					0.10071144485800687
SRSPHKRKRN	10	Unmodified	_SRSPHKRKRN_					0	0	0		ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	633.368518	1264.72248	0.53834	0.00034097	0.025525	1.6167E-05	0.56387	0.00035714	633.3684116178885	85.58	1.5522	85.58	85.069	86.621	0	-0.084542	-1.415E-05	NaN	5.7319	281	60	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6556300			44854	6285	25930	25931							0.10071144485800687
SRSPHKRKRN	10	Unmodified	_SRSPHKRKRN_					0	0	0		ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	ENSG00000168566|ENST00000342415|SNRNP48	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	633.368518	1264.72248	0.66806	0.00042313	-0.060172	-3.8111E-05	0.60788	0.00038501	633.3683827019042	85.744	1.5451	85.735	85.09	86.636	-0.0090027	0.071199	-0.00012271	NaN	5.7319	257	58	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6345200			44855	6285	25930	25931							0.10071144485800687
SRSPKRIS	8	Unmodified	_SRSPKRIS_					0	0	0		BCLAF1|p.R118I|1|0.29|ENSG00000029363|chr6:136278528-136278528|C/A|missense_variant	BCLAF1|p.R118I|1|0.29|ENSG00000029363|chr6:136278528-136278528|C/A|missense_variant	BCLAF1|p.R118I|1|0.29|ENSG00000029363|chr6:136278528-136278528|C/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7776794433594	2	465.777608	929.540663	0.061664	2.8722E-05	0.16078	7.4889E-05	0.22245	0.00010361	465.77756619140615	71.49	1.8231	71.49	70.873	72.696	0					199	65	4	0	0	0	0.45307	1	18501	18501		4.756	0	1	2750300			44856	75	25931	25932	54509	54509					0.07307411740191583
SRSPKRIS	8	Unmodified	_SRSPKRIS_					0	0	0		BCLAF1|p.R118I|1|0.29|ENSG00000029363|chr6:136278528-136278528|C/A|missense_variant	BCLAF1|p.R118I|1|0.29|ENSG00000029363|chr6:136278528-136278528|C/A|missense_variant	BCLAF1|p.R118I|1|0.29|ENSG00000029363|chr6:136278528-136278528|C/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7775573730469	2	465.777608	929.540663	-0.017051	-7.942E-06	0.04675	2.1775E-05	0.029699	1.3833E-05	465.7775281831673	73.055	2.0365	73.055	72.667	74.703	0					190	71	4	0	0	0	0.45307	1	18599	18599		4.756	0.42677	1	1962000			44857	75	25931	25932	54510	54510					0.07307411740191583
SRSPKRIS	8	Unmodified	_SRSPKRIS_					0	0	0		BCLAF1|p.R118I|1|0.29|ENSG00000029363|chr6:136278528-136278528|C/A|missense_variant	BCLAF1|p.R118I|1|0.29|ENSG00000029363|chr6:136278528-136278528|C/A|missense_variant	BCLAF1|p.R118I|1|0.29|ENSG00000029363|chr6:136278528-136278528|C/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.777587890625	2	465.777608	929.540663	0.29394	0.00013691	-0.13788	-6.4221E-05	0.15606	7.2688E-05	465.7774408601235	71.615	3.3981	71.588	70.637	74.035	-0.027275					249	122	4	0	0	0	0.45307	1	18524	18524		4.756	0.42677	1	3172700			44858	75	25931	25932	54511	54511					0.07307411740191583
SRSPKRIS	8	Unmodified	_SRSPKRIS_					0	0	0		BCLAF1|p.R118I|1|0.29|ENSG00000029363|chr6:136278528-136278528|C/A|missense_variant	BCLAF1|p.R118I|1|0.29|ENSG00000029363|chr6:136278528-136278528|C/A|missense_variant	BCLAF1|p.R118I|1|0.29|ENSG00000029363|chr6:136278528-136278528|C/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7775573730469	2	465.777608	929.540663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.836	1	72.806	72.306	73.306	-0.029305								0	0	0	0.37183	1	18572	18572		4.756	0	1				44859	75	25931	25932	54512	54512					0.07307411740191583
SRSQARLI	8	Unmodified	_SRSQARLI_					0	0	0			REV__ENST00000551486.1_1_12:50598277-50615854:-|nuORF	REV__ENST00000551486.1_1_12:50598277-50615854:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.77752685546875	2	465.777608	929.540663	0.061664	2.8722E-05	0.16078	7.4889E-05	0.22245	0.00010361	465.77756619140615	71.49	1.8231	71.49	70.873	72.696	0					199	65	4	0	0	0	0.4354	1	18107	18107		10.824	0	1	2750300	+		44860	13564	25932	25933	54513	54513					0.07307411740191583
SRSQARLI	8	Unmodified	_SRSQARLI_					0	0	0			REV__ENST00000551486.1_1_12:50598277-50615854:-|nuORF	REV__ENST00000551486.1_1_12:50598277-50615854:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7775573730469	2	465.777608	929.540663	0.069502	3.2372E-05	-1.2182	-0.00056741	-1.1487	-0.00053504	465.7775319258724	71.513	3.7412	71.57	70.875	74.617	0.056572					306	134	4	0	0	0	0.4354	1	18281	18281		10.824	0	1	2579700	+		44861	13564	25932	25933	54514	54514					0.07307411740191583
SRSRPLPT	8	Unmodified	_SRSRPLPT_					0	0	0			REV__ENSG00000156050|ENST00000286544|FAM161B	REV__ENSG00000156050|ENST00000286544|FAM161B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2642517089844	2	457.264333	912.514114	0.20539	9.3919E-05	-0.038011	-1.7381E-05	0.16738	7.6538E-05	457.26422440151435	71.455	1.9166	71.511	70.875	72.792	0.056572					223	69	4	0	0	0	0.44389	1	18330	18330		7.9102	0	1	2592300	+		44862	16728	25933	25934	54515	54515					0.054357228488470355
SRSRPLPT	8	Unmodified	_SRSRPLPT_					0	0	0			REV__ENSG00000156050|ENST00000286544|FAM161B	REV__ENSG00000156050|ENST00000286544|FAM161B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.26434326171875	2	457.264333	912.514114	0.25545	0.00011681	-0.030079	-1.3754E-05	0.22537	0.00010306	457.264237516888	71.611	2.0764	71.584	70.663	72.74	-0.027275					256	74	5	0	0	0	0.44389	1	18318	18318		7.9102	0	1	2893400	+		44863	16728	25933	25934	54516	54516					0.054357228488470355
SRSSVIVLVF	10	Unmodified	_SRSSVIVLVF_					0	0	0		ENST00000551747.1_1_19:16652231-16653189:-|nuORF	ENST00000551747.1_1_19:16652231-16653189:-|nuORF	ENST00000551747.1_1_19:16652231-16653189:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8297119140625	2	553.832049	1105.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.244	1	90.245	89.745	90.745	0.0003891								0	0	0	0.37157	1	23900	23900		5.7319	0	1				44864	11806	25934	25935	54517	54517					0.10094577919812764
SRSVVLELLQA	11	Unmodified	_SRSVVLELLQA_					0	0	0		nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79;nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	nc|ENSG00000133958|Q9P2D8|UNC79	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.8595581054688	2	607.858795	1213.70304	0.44225	0.00026883	0.48364	0.00029398	0.92589	0.00056281	607.8589665094569	28.843	0.4493	28.843	28.64	29.089	0					31	15	3	0	0	0	0.39698	2	5071	5071;5128		10.151	2.5416	1	247190			44865	3740	25935	25936	54518;54519	54518					0.10473330631680255
SRTDKIVD	8	Unmodified	_SRTDKIVD_					0	0	0			REV__AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	REV__AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2625732421875	2	467.253631	932.49271	-0.21908	-0.00010237	0.61885	0.00028916	0.39977	0.00018679	467.2538642115541	12.353	0.34066	12.256	12.122	12.463	-0.096607					24	11	3	0	0	0	0.46491	1	141	141		0.69038	0	1	177600	+		44866	13091	25936	25937	54520	54520					0.02376293029487897
SRTFERLQM	9	Unmodified	_SRTFERLQM_					0	0	0		ENSG00000214237|ENST00000465419|MINDY4B	ENSG00000214237|ENST00000465419|MINDY4B	ENSG00000214237|ENST00000465419|MINDY4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.8215942382812	2	584.30059	1166.58663	0.27311	0.00015958	0.53833	0.00031454	0.81144	0.00047412	584.8020815248098	69.148	0.28041	69.148	68.977	69.257	0					13	9	2	0	0	0	0.16283	1	17424	17424		29.082	0	1	91476			44867	8381	25937	25938	54521	54521					0.009996888600880993
SRTFERLQM	9	Unmodified	_SRTFERLQM_					0	0	0		ENSG00000214237|ENST00000465419|MINDY4B	ENSG00000214237|ENST00000465419|MINDY4B	ENSG00000214237|ENST00000465419|MINDY4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8215942382812	2	584.30059	1166.58663	0.28975	0.0001693	1.9842	0.0011594	2.274	0.0013287	584.3022184360743	69.089	0.45956	69.07	68.921	69.381	-0.019157					22	15	2	0	0	0	0.18208	1	17417	17417		26.268	5.8145	1	105460			44868	8381	25937	25938	54522	54522					0.009996888600880993
SRTGYVHIY	9	Unmodified	_SRTGYVHIY_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22;nc|ENSG00000099910|Q53GT1-3|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7739868164062	2	548.282723	1094.55089	0.35833	0.00019647	-1.325	-0.00072648	-0.96667	-0.00053001	548.2817997247739	29.128	0.24257	29.141	29.058	29.3	0.013474					10	8	2	0	0	0	0.25417	1	5170	5170		8.5933	0	1	78547			44869	1504	25938	25939	54523	54523					0.00739974674752375
SRTTTFNV	8	Unmodified	_SRTTTFNV_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.79254150390625	2	463.240524	924.466495	-0.25821	-0.00011961	1.3074	0.00060562	1.0491	0.00048601	463.24132476339673	25.64	0.24996	25.584	25.482	25.732	-0.055931					12	8	2	0	0	0	0.34272	1	4157	4157		7.9102	0	1	79400	+		44870	18498	25939	25940	54524	54524					0.0012402385800669435
SRTTTFNV	8	Unmodified	_SRTTTFNV_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	463.240524	924.466495	-0.07606	-3.5234E-05	0.54088	0.00025056	0.46482	0.00021532	463.24096257736744	25.635	0.33137	25.61	25.412	25.744	-0.025578	0.012946	-0.00023578	NaN	7.9102	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50782	+		44871	18498	25939	25940							0.0012402385800669435
SRVAGPKPGGQ	11	Unmodified	_SRVAGPKPGGQ_					0	0	0			REV__nc|ENSG00000136895|Q5VVW2-4|GARNL3	REV__nc|ENSG00000136895|Q5VVW2-4|GARNL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.780029296875	2	527.293622	1052.57269	0.18734	9.8782E-05	0.3969	0.00020928	0.58424	0.00030806	527.2947128795894	14.826	0.42373	14.762	14.589	15.013	-0.064414					22	14	3	0	0	0	0.33037	1	795	795		7.609	2.3783	1	65846	+		44872	15837	25940	25941	54525	54525					0.04850779423327367
SRVEAVYVL	9	Unmodified	_SRVEAVYVL_					0	0	0		nc|ENSG00000117115|Q9Y2J8-2|PADI2;ENSG00000117115|ENST00000375486|PADI2	nc|ENSG00000117115|Q9Y2J8-2|PADI2	nc|ENSG00000117115|Q9Y2J8-2|PADI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2957153320312	2	518.295299	1034.57605	0.46814	0.00024263	0.35055	0.00018169	0.81868	0.00042432	518.2953684290583	49.591	0.97527	49.591	49.19	50.166	0					94	35	4	0	0	0	0.074552	2	11412	11412;11461		43.772	10.987	1	1827900			44873	2774	25941	25942	54526;54527	54526					0.060140294773418645
SRVEAVYVL	9	Unmodified	_SRVEAVYVL_					0	0	0		nc|ENSG00000117115|Q9Y2J8-2|PADI2;ENSG00000117115|ENST00000375486|PADI2	nc|ENSG00000117115|Q9Y2J8-2|PADI2	nc|ENSG00000117115|Q9Y2J8-2|PADI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2958374023438	2	518.295299	1034.57605	0.30016	0.00015557	0.49976	0.00025903	0.79992	0.0004146	518.2954427178698	49.568	0.8455	49.613	49.238	50.084	0.044891					84	31	4	0	0	0	0.064268	2	11413	11413;11459		47.594	14.809	1	2050100			44874	2774	25941	25942	54528;54529	54528					0.060140294773418645
SRVEAVYVL	9	Unmodified	_SRVEAVYVL_					0	0	0		nc|ENSG00000117115|Q9Y2J8-2|PADI2;ENSG00000117115|ENST00000375486|PADI2	nc|ENSG00000117115|Q9Y2J8-2|PADI2	nc|ENSG00000117115|Q9Y2J8-2|PADI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.295654296875	2	518.295299	1034.57605	0.22789	0.00011811	0.5558	0.00028807	0.78369	0.00040618	518.2954981101191	49.594	0.92839	49.621	49.116	50.044	0.027035					83	33	3	0	0	0	0.074552	2	11396	11396;11445		43.772	10.987	1	1963200			44875	2774	25941	25942	54530;54531	54530					0.060140294773418645
SRVLMRVGGS	10	Unmodified	_SRVLMRVGGS_					0	0	0		ENST00000283290.9_1_3:112280446-112280620:-|nuORF	ENST00000283290.9_1_3:112280446-112280620:-|nuORF	ENST00000283290.9_1_3:112280446-112280620:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8168334960938	2	531.29785	1060.58115	0.57865	0.00030743	-0.70304	-0.00037352	-0.12439	-6.6089E-05	531.2970887019138	76.421	1.3322	76.39	75.881	77.213	-0.031479					84	48	2	0	0	0	0.3258	1	19781	19781		17.113	0	1	1399400			44876	9132	25942	25943	54532	54532					0.05328010068296862
SRVLNLILHA	10	Unmodified	_SRVLNLILHA_					0	0	0			REV__ENST00000215906.5_1_22:26839712-26839850:+|nuORF	REV__ENST00000215906.5_1_22:26839712-26839850:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.3515014648438	2	568.35094	1134.68733	-0.18575	-0.00010557	0.35118	0.00019959	0.16543	9.4021E-05	568.351256224106	12.391	0.23814	12.323	12.253	12.491	-0.06806					13	7	3	0	0	0	0.41892	1	130	130		0	0	1	39872	+		44877	19405	25943	25944	54533	54533					0.12537088905310156
SRVRRAIPRE	10	Unmodified	_SRVRRAIPRE_					0	0	0		ENST00000566431.5_1_16:84853723-84896622:+|nuORF;nc|ENSG00000103196|Q9H0B8-3|CRISPLD2;ENST00000569262.5_1_16:84853723-84906729:+|nuORF;nc|ENSG00000103196|Q9H0B8-2|CRISPLD2;ENSG00000103196|ENST00000262424|CRISPLD2;nc|ENSG00000103196|Q9H0B8-5|CRISPLD2;nc|ENSG00000103196|Q9H0B8-4|CRISPLD2;ENST00000565561.1_1_16:84853723-84872578:+|nuORF	ENST00000566431.5_1_16:84853723-84896622:+|nuORF	ENST00000566431.5_1_16:84853723-84896622:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3718872070312	2	620.373269	1238.73199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.431	1	98.431	97.931	98.931	0								0	0	0	0.37807	1	26336	26336		2.9952	0.49676	1				44878	1816	25944	25945	54534	54534					0.1221691277132777
SRVRREALRP	10	Unmodified	_SRVRREALRP_					0	0	0			REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3729858398438	2	620.373269	1238.73199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.49	1	96.49	95.99	96.99	0								0	0	0	0.38166	1	25782	25782		1.4819	0	1		+		44879	14615	25945	25946	54535	54535					0.12216912771305033
SRWALPAH	8	Unmodified	_SRWALPAH_					0	0	0			REV__chr10:89462624-89506310|321|10.73|0.6|4.16|-|1|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|93	REV__chr10:89462624-89506310|321|10.73|0.6|4.16|-|1|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|93	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7872009277344	2	469.253769	936.492984	-0.043635	-2.0476E-05	1.7777	0.0008342	1.7341	0.00081372	469.25463969329496	28.533	0.30407	28.529	28.385	28.689	-0.0042572					14	10	2	0	0	0	0.34297	1	4952	4952		6.3541	1.5981	1	80738	+		44880	13166	25946	25947	54536	54536					0.02219757539978673
SRWSAVKRPK	10	Unmodified	_SRWSAVKRPK_					0	0	0			REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF	REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.8590087890625	2	607.859464	1213.70437	0.38239	0.00023244	-0.75165	-0.0004569	-0.36926	-0.00022446	607.8590373434561	28.81	0.4367	28.805	28.599	29.036	-0.0042572					34	14	3	0	0	0	0.34155	1	5064	5064		21.537	7.1316	1	317250	+		44881	14502	25947	25948	54537	54537					0.106070095110681
SRWSAVKRPK	10	Unmodified	_SRWSAVKRPK_					0	0	0			REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF	REV__ENST00000470731.5_1_7:2598728-2641152:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	607.859464	1213.70437	0.38239	0.00023244	-0.75165	-0.0004569	-0.36926	-0.00022446	607.8590373434561	28.81	0.4367	28.805	28.599	29.036	-0.0042572	-0.022172	-0.00022012	NaN	21.537	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317250	+		44882	14502	25947	25948							0.106070095110681
SSAAFWPDL	9	Unmodified	_SSAAFWPDL_					0	0	0			REV__ENSG00000121671|ENST00000616080|CRY2	REV__ENSG00000121671|ENST00000616080|CRY2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.2375793457031	2	497.23745	992.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.362	1	83.435	82.935	83.935	0.073097								0	0	0	0.22065	1	21796	21796		15.847	4.2069	1		+		44883	15128	25948	25949	54538	54538					-0.03618494373529302
SSAAVHRLK	9	Unmodified	_SSAAVHRLK_					0	0	0		ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7852478027344	2	484.785433	967.556313	-0.11334	-5.4946E-05	0.71774	0.00034795	0.6044	0.00029301	484.7852777719722	12.993	0.444	12.993	12.783	13.227	0					44	15	4	0	0	0	0.11201	1	292	292		36.506	12.486	1	128890			44884	7397	25949	25950	54539	54539					0.07123698257225897
SSAAVHRLK	9	Unmodified	_SSAAVHRLK_					0	0	0		ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7853088378906	2	484.785433	967.556313	-0.089834	-4.355E-05	1.0421	0.0005052	0.95227	0.00046165	484.78583165772216	13.012	0.57709	12.913	12.729	13.306	-0.09929					42	19	4	0	0	0	0.074552	1	309	309		43.772	7.6454	1	141180			44885	7397	25949	25950	54540	54540					0.07123698257225897
SSADTVHL	8	Unmodified	_SSADTVHL_					0	0	0			REV__MUC4|p.P1936Lfs*6|1|0.08|ENSG00000145113|chr3:195785773-195785774|-/A|frameshift_variant	REV__MUC4|p.P1936Lfs*6|1|0.08|ENSG00000145113|chr3:195785773-195785774|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.57489013671875	2	415.20615	828.397747	-0.19765	-8.2067E-05	0.34091	0.00014155	0.14326	5.9482E-05	415.20631559402926	27.949	0.41693	27.949	27.687	28.104	0.0004673					24	14	2	0	0	0	0.31375	1	4760	4760		19.439	0	1	109500	+		44886	16278	25950	25951	54541	54541					-0.023316404417300873
SSAFGGSLPAK	11	Unmodified	_SSAFGGSLPAK_					0	0	0		HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;nc|ENSG00000147874|Q7Z4H7-2|HAUS6;HAUS6|p.P532Hfs*10|1|0.04|ENSG00000147874|chr9:19063042-19063042|G/-|frameshift_variant	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2697448730469	2	511.269281	1020.52401	-0.17729	-9.0642E-05	-0.95343	-0.00048746	-1.1307	-0.0005781	511.2691176174972	34.402	0.61547	34.479	34.164	34.78	0.077377					46	21	3	0	0	0	0.21482	1	6786	6786		51.488	34.375	1	209720			44887	4788	25951	25952	54542	54542					0.0145686606357458
SSAGRYFFTPL	11	Unmodified	_SSAGRYFFTPL_					0	0	0		ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	ENSG00000085415|ENST00000399892|SEH1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.57489013671875	3	415.880267	1244.61897	-0.20242	-8.4182E-05	3.8339	0.0015944	3.6315	0.0015103	415.8824168860248	27.717	0.19175	27.705	27.645	27.837	-0.01156					9	6	2	0	0	0	0.3259	1	4760	4760		4.7159	0	1	44746			44888	1257	25952	25953	54543	54543					0.006447995347571123
SSAHVALQV	9	Unmodified	_SSAHVALQV_					0	0	0		ENST00000525275.5_1_8:145154265-145154844:-|nuORF;nc|ENSG00000179526|Q9H0F6-2|SHARPIN;ENSG00000179526|ENST00000398712|SHARPIN	ENST00000525275.5_1_8:145154265-145154844:-|nuORF	ENST00000525275.5_1_8:145154265-145154844:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2501220703125	2	456.250892	910.48723	-1.3164	-0.00060062	0.33111	0.00015107	-0.9853	-0.00044954	456.2509811881059	34.933	0.55457	34.933	34.672	35.227	0					42	19	3	0	0	0	0.19747	1	6962	6962		24.021	0.87215	1	326390			44889	11536	25953	25954	54544	54544					0.02840614237675254
SSAHVALQV	9	Unmodified	_SSAHVALQV_					0	0	0		ENST00000525275.5_1_8:145154265-145154844:-|nuORF;nc|ENSG00000179526|Q9H0F6-2|SHARPIN;ENSG00000179526|ENST00000398712|SHARPIN	ENST00000525275.5_1_8:145154265-145154844:-|nuORF	ENST00000525275.5_1_8:145154265-145154844:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2503356933594	2	456.250892	910.48723	-0.78644	-0.00035881	0.18651	8.5095E-05	-0.59993	-0.00027372	456.2509209143431	34.811	0.51988	34.889	34.675	35.195	0.077377					30	18	2	0	0	0	0.19747	1	6910	6910		24.021	0.87215	1	357620			44890	11536	25953	25954	54545	54545					0.02840614237675254
SSAKPVIKK	9	Unmodified	_SSAKPVIKK_					0	0	0		ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6	ENSG00000112701|ENST00000447266|SENP6	ENSG00000112701|ENST00000447266|SENP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.3079833984375	2	479.30821	956.601866	-0.17697	-8.4823E-05	-0.18637	-8.9328E-05	-0.36334	-0.00017415	479.30799045606415	12.451	0.3925	12.451	12.332	12.724	0					29	12	4	0	0	0	0.07944	1	135	135		41.956	10.687	1	348700			44891	2455	25954	25955	54546	54546					0.12182923719615246
SSAKPVIKK	9	Unmodified	_SSAKPVIKK_					0	0	0		ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6	ENSG00000112701|ENST00000447266|SENP6	ENSG00000112701|ENST00000447266|SENP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.3079528808594	2	479.30821	956.601866	-0.040038	-1.9191E-05	-0.30205	-0.00014478	-0.34209	-0.00016397	479.30795179359365	12.471	0.46639	12.374	12.236	12.703	-0.096607					36	15	4	0	0	0	0.12279	1	133	133		34.932	8.6639	1	339920			44892	2455	25954	25955	54547	54547					0.12182923719615246
SSAKPVIKK	9	Unmodified	_SSAKPVIKK_					0	0	0		ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6	ENSG00000112701|ENST00000447266|SENP6	ENSG00000112701|ENST00000447266|SENP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.3078918457031	2	479.30821	956.601866	-0.18084	-8.6679E-05	-0.2703	-0.00012956	-0.45114	-0.00021623	479.307984586912	12.488	0.38876	12.42	12.313	12.702	-0.06806					28	12	3	0	0	0	0.12279	1	142	142		34.932	7.3033	1	342360			44893	2455	25954	25955	54548	54548					0.12182923719615246
SSALHSLLK	9	Unmodified	_SSALHSLLK_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2818603515625	2	478.282192	954.549831	0.24919	0.00011918	-0.098855	-4.728E-05	0.15034	7.1905E-05	478.2820922185103	30.287	1.0308	30.287	29.75	30.781	0					63	36	3	0	0	0	0.0048951	2	5505	5505;5556		87.258	39.51	1	526970			44894	12810	25955	25956	54549;54550	54549					0.07073760305866017
SSALHSLLK	9	Unmodified	_SSALHSLLK_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2818603515625	2	478.282192	954.549831	0.31777	0.00015198	-0.11061	-5.2902E-05	0.20716	9.9081E-05	478.28214420235736	30.266	0.9926	30.294	29.701	30.693	0.027946					67	34	3	0	0	0	0.0016724	1	5513	5513		114.19	51.614	1	480610			44895	12810	25955	25956	54551	54551					0.07073760305866017
SSALHSLLK	9	Unmodified	_SSALHSLLK_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.28155517578125	2	478.282192	954.549831	-0.044191	-2.1136E-05	-0.17088	-8.1731E-05	-0.21508	-0.00010287	478.28217256375615	30.259	0.83964	30.286	29.864	30.704	0.027157					61	28	3	0	0	0	0.0023895	2	5492	5492;5555		107.1	44.527	1	446540			44896	12810	25955	25956	54552;54553	54552					0.07073760305866017
SSALLQLLK	9	Unmodified	_SSALLQLLK_					0	0	0		ENST00000344691.8_1_21:36260099-36260198:-|nuORF	ENST00000344691.8_1_21:36260099-36260198:-|nuORF	ENST00000344691.8_1_21:36260099-36260198:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.8083190917969	2	486.808042	971.601532	0.069205	3.369E-05	0.41028	0.00019973	0.47949	0.00023342	486.8082386058452	61.31	0.57193	61.31	61.08	61.652	0					39	21	2	0	0	0	0.0016712	1	15081	15081		114.2	38.441	1	629480			44897	9556	25956	25957	54554	54554					0.11459503999753906
SSALLQLLK	9	Unmodified	_SSALLQLLK_					0	0	0		ENST00000344691.8_1_21:36260099-36260198:-|nuORF	ENST00000344691.8_1_21:36260099-36260198:-|nuORF	ENST00000344691.8_1_21:36260099-36260198:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.80816650390625	2	486.808042	971.601532	0.022538	1.0972E-05	0.92683	0.00045119	0.94937	0.00046216	486.80855887653007	61.208	0.47474	61.305	61.14	61.615	0.096985					28	17	2	0	0	0	0.00012108	1	15021	15021		137.42	51.782	1	894050			44898	9556	25956	25957	54555	54555					0.11459503999753906
SSALLQLLK	9	Unmodified	_SSALLQLLK_					0	0	0		ENST00000344691.8_1_21:36260099-36260198:-|nuORF	ENST00000344691.8_1_21:36260099-36260198:-|nuORF	ENST00000344691.8_1_21:36260099-36260198:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.8085021972656	2	486.808042	971.601532	0.10497	5.1099E-05	0.43455	0.00021154	0.53952	0.00026264	486.8083319483495	61.346	0.47729	61.337	61.104	61.581	-0.0094566					30	17	2	0	0	0	0.00012108	1	15062	15062		137.42	51.782	1	696130			44899	9556	25956	25957	54556	54556					0.11459503999753906
SSAPPLTGK	9	Unmodified	_SSAPPLTGK_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.2398986816406	2	429.239993	856.465432	-0.2028	-8.7049E-05	0.15513	6.659E-05	-0.047665	-2.046E-05	429.2399775632273	19.623	0.8616	19.623	19.211	20.073	0					84	30	4	0	0	0	0.069258	1	2323	2323		45.74	9.6129	1	715160			44900	1533	25957	25958	54557	54557					0.03145809489092244
SSAPPLTGK	9	Unmodified	_SSAPPLTGK_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.2398681640625	2	429.239993	856.465432	-0.041098	-1.7641E-05	-0.0060626	-2.6023E-06	-0.04716	-2.0243E-05	429.23989677431086	19.781	0.89435	19.665	19.26	20.154	-0.11592					92	30	4	0	0	0	0.23216	1	2339	2339		22.658	2.2436	1	777240			44901	1533	25957	25958	54558	54558					0.03145809489092244
SSAPPLTGK	9	Unmodified	_SSAPPLTGK_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.23992919921875	2	429.239993	856.465432	0.03796	1.6294E-05	-0.047685	-2.0468E-05	-0.0097256	-4.1746E-06	429.2398752334242	19.721	0.8069	19.665	19.283	20.09	-0.055693					87	28	4	0	0	0	0.032589	1	2336	2336		59.368	30.287	1	803440			44902	1533	25957	25958	54559	54559					0.03145809489092244
SSAPPRKD	8	Unmodified	_SSAPPRKD_					0	0	0		nc|ENSG00000198598|Q9ULZ9-2|MMP17;ENSG00000198598|ENST00000360564|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.2398376464844	2	429.227417	856.44028	-0.25401	-0.00010903	0.5376	0.00023075	0.28359	0.00012172	429.22758315629176	19.378	0.41561	19.378	19.211	19.627	0					23	14	2	0	0	0	0.39956	1	2279	2279		19.439	2.4967	1	47465			44903	8093	25958	25959	54560	54560					0.0063175468651479605
SSAPPRKD	8	Unmodified	_SSAPPRKD_					0	0	0		nc|ENSG00000198598|Q9ULZ9-2|MMP17;ENSG00000198598|ENST00000360564|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.2398681640625	2	429.227417	856.44028	-0.10648	-4.5705E-05	-0.60515	-0.00025975	-0.71163	-0.00030545	429.22727821303977	19.544	0.49466	19.428	19.205	19.7	-0.11592					29	16	3	0	0	0	0.42446	1	2339	2339		14.582	1.0738	1	54443			44904	8093	25958	25959	54561	54561					0.0063175468651479605
SSAPPRKD	8	Unmodified	_SSAPPRKD_					0	0	0		nc|ENSG00000198598|Q9ULZ9-2|MMP17;ENSG00000198598|ENST00000360564|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	429.227417	856.44028	-0.065541	-2.8132E-05	0.44708	0.0001919	0.38154	0.00016377	429.2276273336203	19.532	0.42489	19.476	19.253	19.678	-0.055691	0.04889	0.00057986	NaN	19.439	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58910			44905	8093	25958	25959							0.0063175468651479605
SSAPPTPTRL	10	Unmodified	_SSAPPTPTRL_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7833862304688	2	513.782556	1025.55056	0.33324	0.00017121	0.41744	0.00021448	0.75068	0.00038569	513.782868141588	32.834	0.8064	32.834	32.529	33.336	0					47	28	2	0	0	0	0.11062	1	6279	6279		45.74	25.325	1	297790			44906	1836	25959	25960	54562	54562					0.038805549548897034
SSAPPTPTRL	10	Unmodified	_SSAPPTPTRL_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7827758789062	2	513.782556	1025.55056	0.20483	0.00010524	1.1303	0.00058071	1.3351	0.00068595	513.7829176287142	32.759	0.76005	32.813	32.498	33.258	0.054371					45	27	2	0	0	0	0.32877	1	6288	6288		16.566	5.0712	1	331770			44907	1836	25959	25960	54563	54563					0.038805549548897034
SSAPTPVF	8	Unmodified	_SSAPTPVF_					0	0	0		ENST00000300952.6_1_19:1257977-1258148:+|nuORF	ENST00000300952.6_1_19:1257977-1258148:+|nuORF	ENST00000300952.6_1_19:1257977-1258148:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.739501953125	2	403.208161	804.401769	-0.28182	-0.00011363	0.76412	0.0003081	0.4823	0.00019447	403.208154009064	75.595	0.53527	75.595	75.315	75.85	0					37	18	3	0	0	0	0.34092	1	19409	19409		13.508	13.508	1	254840			44908	9221	25960	25961	54564	54564					-0.008255509480022738
SSAPTPVF	8	Unmodified	_SSAPTPVF_					0	0	0		ENST00000300952.6_1_19:1257977-1258148:+|nuORF	ENST00000300952.6_1_19:1257977-1258148:+|nuORF	ENST00000300952.6_1_19:1257977-1258148:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.739501953125	2	403.208161	804.401769	-0.17166	-6.9214E-05	0.087398	3.524E-05	-0.084261	-3.3975E-05	403.20792656279326	75.579	0.53986	75.631	75.349	75.889	0.052361					33	19	2	0	0	0	0.34092	1	19405	19405		8.5933	8.5933	1	251670			44909	9221	25960	25961	54565	54565					-0.008255509480022738
SSAPTPVF	8	Unmodified	_SSAPTPVF_					0	0	0		ENST00000300952.6_1_19:1257977-1258148:+|nuORF	ENST00000300952.6_1_19:1257977-1258148:+|nuORF	ENST00000300952.6_1_19:1257977-1258148:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.7395324707031	2	403.208161	804.401769	-0.061226	-2.4687E-05	0.017356	6.9981E-06	-0.04387	-1.7689E-05	403.2080296585123	75.63	0.62843	75.599	75.391	76.02	-0.031479					35	22	2	0	0	0	0.34092	1	19423	19423		13.508	13.508	1	248400			44910	9221	25960	25961	54566	54566					-0.008255509480022738
SSARQFHGKR	10	Unmodified	_SSARQFHGKR_					0	0	0			REV__ENSG00000169752|ENST00000394907|NRG4	REV__ENSG00000169752|ENST00000394907|NRG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8130493164062	2	587.31542	1172.61629	0.48917	0.0002873	-1.4387	-0.00084495	-0.94949	-0.00055765	587.3147495500734	20.994	0.39566	20.994	20.742	21.138	0					23	13	2	0	0	0	0.32054	1	2730	2730		3.2813	1.1953	1	144840	+		44911	17536	25961	25962	54567	54567					0.036883889204545994
SSATTSPFFK	10	Unmodified	_SSATTSPFFK_					0	0	0		nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB	nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-6|NUMB	nc|ENSG00000133961|P49757-4|NUMB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.769287109375	2	536.769114	1071.52368	0.47635	0.00025569	-0.117	-6.28E-05	0.35936	0.00019289	536.7688755596465	39.512	0.57448	39.611	39.347	39.922	0.099407					54	20	4	0	0	0	0.0092666	1	8330	8330		83.429	55.8	1	948150			44912	3741;12704	25962	25963	54568	54568					-0.00922553656278069
SSATTSPFFK	10	Unmodified	_SSATTSPFFK_					0	0	0		nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB	nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-6|NUMB	nc|ENSG00000133961|P49757-4|NUMB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	536.769114	1071.52368	0.17591	9.4424E-05	0.52517	0.0002819	0.70108	0.00037632	536.7690839984582	39.681	0.72994	39.681	39.402	40.132	0	0.041683	0.00036805	NaN	83.429	65	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535240			44913	3741;12704	25962	25963							-0.00922553656278069
SSATTSPFFK	10	Unmodified	_SSATTSPFFK_					0	0	0		nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB	nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-6|NUMB	nc|ENSG00000133961|P49757-4|NUMB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	536.769114	1071.52368	0.31964	0.00017157	0.22302	0.00011971	0.54266	0.00029128	536.7690429291042	39.532	0.60397	39.625	39.39	39.994	0.092674	-0.014008	4.3671E-05	NaN	83.429	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	750670			44914	3741;12704	25962	25963							-0.00922553656278069
SSCFIMMMRN	10	Unmodified	_SSCFIMMMRN_					0	0	0			REV__ENST00000554308.5_1_14:91939686-91942225:-|nuORF	REV__ENST00000554308.5_1_14:91939686-91942225:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.1747741699219	3	407.174535	1218.50178	-0.19099	-7.7768E-05	0.45555	0.00018549	0.26456	0.00010772	407.1749061465892	26.39	0.98496	26.39	26.106	27.091	0					134	34	7	0	0	0	0.41025	1	4378	4378		1.5923	1.5923	1	819880	+		44915	22232	25963	25964	54569	54569					-0.09873464264001086
SSCLGWKEMI	10	Unmodified	_SSCLGWKEMI_					0	0	0		ENST00000447489.1_3_10:81915611-81916229:-|nuORF	ENST00000447489.1_3_10:81915611-81916229:-|nuORF	ENST00000447489.1_3_10:81915611-81916229:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.2451782226562	2	577.272652	1152.53075	-0.087204	-5.0341E-05	0.3301	0.00019056	0.24289	0.00014022	577.2728146517398	25.701	0.71744	25.679	25.056	25.774	-0.022236					44	25	2	0	0	0	0.32033	1	4076	4076		3.5965	0.31518	1	78718			44916	10605	25964	25965	54570	54570					-0.03941280371736866
SSCRISFLLAN	11	Unmodified	_SSCRISFLLAN_					0	0	0		nc|ENSG00000117152|P49798-3|RGS4	nc|ENSG00000117152|P49798-3|RGS4	nc|ENSG00000117152|P49798-3|RGS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.21337890625	3	404.213141	1209.61759	-0.40924	-0.00016542	0.28487	0.00011515	-0.12437	-5.0272E-05	404.2132786980798	25.857	0.59549	25.818	25.531	26.126	-0.038671					42	20	3	0	0	0	0.42246	1	4196	4196		8.2864	2.0521	1	235380			44917	12672	25965	25966	54571	54571					0.0211684217435959
SSCYQRLLQI	10	Unmodified	_SSCYQRLLQI_					0	0	0		nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2	nc|ENSG00000144554|Q9BXW9-3|FANCD2	nc|ENSG00000144554|Q9BXW9-3|FANCD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.21307373046875	3	404.213141	1209.61759	-0.27701	-0.00011197	0.27359	0.00011059	-0.0034187	-1.3819E-06	404.21321968430203	25.843	0.71221	25.821	25.524	26.236	-0.022236					56	25	3	0	0	0	0.37297	1	4194	4194		8.4443	0	1	321140			44918	4592	25966	25967	54572	54572					0.0211684217435959
SSDCCMALLQD	11	Unmodified	_SSDCCMALLQD_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8292846679688	2	593.232867	1184.45118	0.85285	0.00050594	3.6107	0.002142	4.4636	0.0026479	593.2359238087737	77.835	0.081787	77.835	77.796	77.878	0					4	2	2	0	0	0	0.33218	1	20116	20116		4.1895	1.1943	1	31320			44919	5595	25967	25968	54573	54573					-0.13366715108031713
SSDEEKYSL	9	Unmodified	_SSDEEKYSL_					0	0	0		ENST00000508467.5_1_5:75001514-75013149:-|nuORF;POC5|p.D164*|1|0.22|ENSG00000152359|chr5:75702628-75702629|-/A|frameshift_variant;POC5|p.Y276Cfs*26|1|0.18|ENSG00000152359|chr5:75690509-75690531|TTTCTTCAGTAAAGTTCTCTGGT/-|frameshift_variant;ENSG00000152359|ENST00000428202|POC5	ENST00000508467.5_1_5:75001514-75013149:-|nuORF	ENST00000508467.5_1_5:75001514-75013149:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2373657226562	2	529.237844	1056.46113	0.31834	0.00016848	-0.91123	-0.00048226	-0.59289	-0.00031378	529.237368334247	61.295	0.95662	61.285	60.888	61.845	-0.0094566					67	34	3	0	0	0	0.26612	2	15002	15002;15156		13.906	13.906	1	1219400			44920	5016	25968	25969	54574;54575	54574					-0.06483744515139733
SSDLLFLLERT	11	Unmodified	_SSDLLFLLERT_					0	0	0			REV__VWA5B2|p.I651Yfs*88|1|0.07|ENSG00000145198|chr3:184238620-184238620|C/-|frameshift_variant	REV__VWA5B2|p.I651Yfs*88|1|0.07|ENSG00000145198|chr3:184238620-184238620|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.3563842773438	2	647.356085	1292.69762	0.29928	0.00019374	0.03648	2.3616E-05	0.33576	0.00021736	647.3560626157708	40.914	0.86687	40.914	40.604	41.471	0					104	31	5	0	0	0	0.44088	1	8923	8923		10.8	5.9025	1	4623000	+		44921	16282	25969	25970	54576	54576					0.06297607049191356
SSDLLFLLERT	11	Unmodified	_SSDLLFLLERT_					0	0	0			REV__VWA5B2|p.I651Yfs*88|1|0.07|ENSG00000145198|chr3:184238620-184238620|C/-|frameshift_variant	REV__VWA5B2|p.I651Yfs*88|1|0.07|ENSG00000145198|chr3:184238620-184238620|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.3563842773438	2	647.356085	1292.69762	0.50639	0.00032781	-0.14917	-9.6566E-05	0.35722	0.00023125	647.3559315462117	40.653	0.98497	40.746	40.474	41.459	0.09267					113	36	4	0	0	0	0.34327	1	8780	8780		28.495	8.8686	1	4834700	+		44922	16282	25969	25970	54577	54577					0.06297607049191356
SSDLLFLLERT	11	Unmodified	_SSDLLFLLERT_					0	0	0			REV__VWA5B2|p.I651Yfs*88|1|0.07|ENSG00000145198|chr3:184238620-184238620|C/-|frameshift_variant	REV__VWA5B2|p.I651Yfs*88|1|0.07|ENSG00000145198|chr3:184238620-184238620|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.3186645507812	2	647.356085	1292.69762	0.50639	0.00032781	-0.14917	-9.6566E-05	0.35722	0.00023125	647.3559315462117	40.653	0.98497	40.746	40.474	41.459	0.09267					113	36	4	0	0	0	0.33056	1	8631	8631		10.8	10.8	1	4834700	+		44923	16282	25969	25970	54578	54578					0.06297607049191356
SSDLLFLLERT	11	Unmodified	_SSDLLFLLERT_					0	0	0			REV__VWA5B2|p.I651Yfs*88|1|0.07|ENSG00000145198|chr3:184238620-184238620|C/-|frameshift_variant	REV__VWA5B2|p.I651Yfs*88|1|0.07|ENSG00000145198|chr3:184238620-184238620|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.3563232421875	2	647.356085	1292.69762	0.30599	0.00019809	0.014159	9.1658E-06	0.32015	0.00020725	647.3560362060186	40.614	0.94613	40.714	40.427	41.373	0.099407					106	34	5	0	0	0	0.34327	1	8759	8759		28.495	8.08	1	5396100	+		44924	16282	25969	25970	54579	54579					0.06297607049191356
SSFELIVQK	9	Unmodified	_SSFELIVQK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;KPNB1|p.A876Cfs*2|1|0.05|ENSG00000108424|chr17:47680663-47680664|-/GTGCT|frameshift_variant;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7953491210938	2	525.795132	1049.57571	0.6659	0.00035013	-0.49096	-0.00025815	0.17494	9.1981E-05	525.7948175177072	48.551	0.9295	48.551	48.205	49.135	0					75	32	4	0	0	0	0.00052839	1	11117	11117		133.05	89.194	1	2864100			44925	2185	25970	25971	54580	54580					0.052906097574805244
SSFELIVQK	9	Unmodified	_SSFELIVQK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;KPNB1|p.A876Cfs*2|1|0.05|ENSG00000108424|chr17:47680663-47680664|-/GTGCT|frameshift_variant;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7952880859375	2	525.795132	1049.57571	0.79075	0.00041577	-0.69296	-0.00036435	0.097788	5.1417E-05	525.794758602059	48.505	0.81969	48.553	48.285	49.105	0.047523					66	29	3	0	0	0	4.4522E-06	1	11108	11108		129.77	85.914	1	2775500			44926	2185	25970	25971	54581	54581					0.052906097574805244
SSFELIVQK	9	Unmodified	_SSFELIVQK_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;KPNB1|p.A876Cfs*2|1|0.05|ENSG00000108424|chr17:47680663-47680664|-/GTGCT|frameshift_variant;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7951049804688	2	525.795132	1049.57571	0.67488	0.00035485	-0.58991	-0.00031017	0.084976	4.468E-05	525.7948279580082	48.444	0.64666	48.488	48.243	48.89	0.043324					68	23	4	0	0	0	0.00052839	1	11097	11097		121.53	77.676	1	2369900			44927	2185	25970	25971	54582	54582					0.052906097574805244
SSFGFLGSQK	10	Unmodified	_SSFGFLGSQK_					0	0	0		ENST00000567876.1_1_15:74282649-74284576:-|nuORF;nc|ENSG00000067221|Q9UBI4-6|STOML1;nc|ENSG00000067221|Q9UBI4-4|STOML1;nc|ENSG00000067221|Q9UBI4-2|STOML1;nc|ENSG00000067221|Q9UBI4-3|STOML1;ENSG00000067221|ENST00000541638|STOML1	ENST00000567876.1_1_15:74282649-74284576:-|nuORF	ENST00000567876.1_1_15:74282649-74284576:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8422241210938	2	529.269281	1056.52401	0.49537	0.00026219	0.46679	0.00024706	0.96216	0.00050924	529.2688175430565	46.167	0.71926	46.232	45.675	46.394	0.065048					41	25	3	0	0	0	0.24335	1	10362	10362		28.234	7.78	1	820740			44928	861	25971	25972	54583	54583					-0.0019913393641672883
SSFGGLILSK	10	Unmodified	_SSFGGLILSK_					0	0	0		ENST00000506102.5_1_3:125725861-125741959:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF;nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.79010009765625	2	504.78985	1007.56515	0.4095	0.00020671	0.2252	0.00011368	0.6347	0.00032039	504.7901184427863	52.986	1.3637	52.986	52.55	53.914	0					84	50	2	0	0	0	0.0042491	2	12458	12458;12504		96.034	53.722	1	2167500			44929	2573	25972	25973	54584;54585	54584					0.061666271030503594
SSFGGLILSK	10	Unmodified	_SSFGGLILSK_					0	0	0		ENST00000506102.5_1_3:125725861-125741959:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF;nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7901306152344	2	504.78985	1007.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.866	1	52.917	52.417	53.417	0.050575								0	0	0	1.2948E-05	1	12441	12441		105.35	63.033	1				44930	2573	25972	25973	54586	54586					0.061666271030503594
SSFGGLILSK	10	Unmodified	_SSFGGLILSK_					0	0	0		ENST00000506102.5_1_3:125725861-125741959:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF;nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7903137207031	2	504.78985	1007.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.057	1	53.113	52.613	53.613	0.056255								0	0	0	0.0081622	1	12499	12499		72.59	37.658	1				44931	2573	25972	25973	54587	54587					0.061666271030503594
SSFGGLILSK	10	Unmodified	_SSFGGLILSK_					0	0	0		ENST00000506102.5_1_3:125725861-125741959:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF;nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7904357910156	2	504.78985	1007.56515	0.37734	0.00019048	0.48046	0.00024253	0.8578	0.00043301	504.7901272726459	53.102	1.2543	53.093	52.54	53.794	-0.0096054					82	46	2	0	0	0	0.0021517	2	12537	12488;12537		108.26	64.28	1	1679900			44932	2573	25972	25973	54588;54589	54589					0.061666271030503594
SSFGNMIYK	9	Oxidation (M)	_SSFGNM(Oxidation (M))IYK_		SSFGNM(1)IYK		SSFGNM(93)IYK	0	0	1		ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.75048828125	2	531.749867	1061.48518	0.79805	0.00042436	-0.085232	-4.5322E-05	0.71281	0.00037904	531.7495922417036	34.052	0.8925	34.052	33.78	34.672	0					56	31	4	0	0	0	0.0042138	1	6650	6650		92.653	38.821	1	718990			44933	2929	25973	25974	54590	54590		369			-0.04310182562448972
SSFGNMIYK	9	Oxidation (M)	_SSFGNM(Oxidation (M))IYK_		SSFGNM(1)IYK		SSFGNM(89)IYK	0	0	1		ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7505493164062	2	531.749867	1061.48518	0.91287	0.00048542	-0.34953	-0.00018586	0.56334	0.00029955	531.7495769849187	33.867	0.75859	33.933	33.676	34.435	0.06636					54	26	3	0	0	0	0.0046246	1	6594	6594		89.401	37.771	1	570590			44934	2929	25973	25974	54591	54591		369			-0.04310182562448972
SSFGNMIYK	9	Oxidation (M)	_SSFGNM(Oxidation (M))IYK_		SSFGNM(1)IYK		SSFGNM(100)IYK	0	0	1		ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7504272460938	2	531.749867	1061.48518	0.34391	0.00018288	0.0017985	9.5633E-07	0.34571	0.00018383	531.7498560344417	33.876	0.61448	33.943	33.711	34.326	0.0667					44	21	3	0	0	0	0.003317	2	6594	6594;6645		99.755	39.681	1	739880			44935	2929	25973	25974	54592;54593	54592		369			-0.04310182562448972
SSFGRGFFK	9	Unmodified	_SSFGRGFFK_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7670288085938	2	516.766709	1031.51886	0.35491	0.0001834	0.049442	2.555E-05	0.40435	0.00020895	516.7666596695121	38.103	0.9735	38.103	37.767	38.741	0					100	34	4	0	0	0	0.0045319	1	7883	7883		90.135	48.04	1	3295400			44936	2332	25974	25975	54594	54594					0.0043660699161591765
SSFGRGFFK	9	Unmodified	_SSFGRGFFK_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7667846679688	2	516.766709	1031.51886	0.34505	0.00017831	0.05955	3.0773E-05	0.40459	0.00020908	516.7666520268843	37.959	1.0903	38.05	37.744	38.834	0.090881					104	39	4	0	0	0	0.0045319	2	7840	7840;7889		90.135	50.178	1	2870500			44937	2332	25974	25975	54595;54596	54595					0.0043660699161591765
SSFGRGFFK	9	Unmodified	_SSFGRGFFK_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.766845703125	2	516.766709	1031.51886	0.20838	0.00010769	0.14165	7.3201E-05	0.35004	0.00018089	516.7667481663822	37.953	1.046	38.051	37.712	38.758	0.097527					97	37	4	0	0	0	0.0010968	3	7830	7830;7878;7949		121.53	77.127	1	3106900			44938	2332	25974	25975	54597;54598;54599	54597					0.0043660699161591765
SSFLIKRNK	9	Unmodified	_SSFLIKRNK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28;nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8302001953125	2	546.82984	1091.64513	0.36652	0.00020042	0.004806	2.6281E-06	0.37132	0.00020305	546.82970789189	18.512	0.61024	18.394	18.151	18.761	-0.11739					46	20	3	0	0	0	0.16283	1	1961	1961		29.082	5.061	1	194010			44939	2165	25975	25976	54600	54600					0.10297113496881138
SSFLIKRNK	9	Unmodified	_SSFLIKRNK_					0	0	0		ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28;nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28	ENSG00000108107|ENST00000344063|RPL28	ENSG00000108107|ENST00000344063|RPL28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8296508789062	2	546.82984	1091.64513	0.19868	0.00010864	0.10337	5.6524E-05	0.30205	0.00016517	546.8297531893961	18.503	0.67488	18.445	18.171	18.846	-0.058172					45	23	3	0	0	0	0.13748	2	1949	1949;2000		32.786	2.96	1	199900			44940	2165	25975	25976	54601;54602	54601					0.10297113496881138
SSFLPPFRK	9	Unmodified	_SSFLPPFRK_					0	0	0		ENST00000547492.1_1_12:58329583-58329670:-|nuORF	ENST00000547492.1_1_12:58329583-58329670:-|nuORF	ENST00000547492.1_1_12:58329583-58329670:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.80615234375	2	539.805834	1077.59712	0.4624	0.0002496	0.086684	4.6793E-05	0.54908	0.0002964	539.805865437677	43.344	0.75941	43.344	42.871	43.63	0					77	27	4	0	0	0	0.11461	1	9512	9512		36.127	7.6402	1	759950			44941	11769	25976	25977	54603	54603					0.06142039576843672
SSFLPPFRK	9	Unmodified	_SSFLPPFRK_					0	0	0		ENST00000547492.1_1_12:58329583-58329670:-|nuORF	ENST00000547492.1_1_12:58329583-58329670:-|nuORF	ENST00000547492.1_1_12:58329583-58329670:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3218383789062	2	539.805834	1077.59712	0.53706	0.00028991	0.018592	1.0036E-05	0.55565	0.00029994	539.8057681046191	43.052	0.74232	43.137	42.78	43.522	0.085201					71	26	3	0	0	0	0.1854	1	9354	9354		32.305	10.559	1	938200			44942	11769	25976	25977	54604	54604					0.06142039576843672
SSFPGTIISR	10	Unmodified	_SSFPGTIISR_					0	0	0		ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7906494140625	2	532.790381	1063.56621	0.45278	0.00024124	-0.32784	-0.00017467	0.12495	6.6571E-05	532.790198667565	46.237	1.7765	46.302	46.043	47.819	0.065048					112	64	4	0	0	0	0.22625	1	10575	10575		29.437	10.075	1	5125400			44943	7506	25977	25978	54605	54605					0.036968414719467546
SSFQFSIQKL	10	Unmodified	_SSFQFSIQKL_					0	0	0		nc|ENSG00000149636|Q9H410-3|DSN1;nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1	nc|ENSG00000149636|Q9H410-3|DSN1	nc|ENSG00000149636|Q9H410-3|DSN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.3031616210938	2	592.819138	1183.62372	0.46752	0.00027716	-1.3216	-0.00078349	-0.85412	-0.00050634	592.8184064254178	62.816	0.56738	62.816	62.501	63.068	0					36	20	3	0	0	0	0.31094	1	15499	15499		19.626	11.47	1	291870			44944	4885	25978	25979	54606	54606					0.03925683677516645
SSFQFSIQKL	10	Unmodified	_SSFQFSIQKL_					0	0	0		nc|ENSG00000149636|Q9H410-3|DSN1;nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1	nc|ENSG00000149636|Q9H410-3|DSN1	nc|ENSG00000149636|Q9H410-3|DSN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.302978515625	2	592.819138	1183.62372	0.50048	0.00029669	-0.97442	-0.00057765	-0.47394	-0.00028096	592.8186277385133	62.637	0.49602	62.734	62.521	63.017	0.096985					27	17	2	0	0	0	0.31289	1	15451	15451		16.566	5.742	1	338860			44945	4885	25978	25979	54607	54607					0.03925683677516645
SSFQFSIQKL	10	Unmodified	_SSFQFSIQKL_					0	0	0		nc|ENSG00000149636|Q9H410-3|DSN1;nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1	nc|ENSG00000149636|Q9H410-3|DSN1	nc|ENSG00000149636|Q9H410-3|DSN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.3030395507812	2	592.819138	1183.62372	0.36276	0.00021505	-1.1027	-0.00065368	-0.7399	-0.00043863	592.8185993143378	62.766	0.4518	62.758	62.542	62.994	-0.0085564					30	16	2	0	0	0	0.31119	1	15478	15478		18.373	5.3306	1	365380			44946	4885	25978	25979	54608	54608					0.03925683677516645
SSFQGLILK	9	Unmodified	_SSFQGLILK_					0	0	0		ENSG00000169131|ENST00000335815|ZNF354A	ENSG00000169131|ENST00000335815|ZNF354A	ENSG00000169131|ENST00000335815|ZNF354A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2474060058594	2	496.792392	991.570232	0.32914	0.00016351	-0.24427	-0.00012135	0.084867	4.2161E-05	496.7922816811411	52.653	1.6087	52.652	52.115	53.724	-0.00080872					72	59	2	0	0	0	0.067763	1	12388	12388		51.415	25.147	1	648000			44947	6330	25979	25980	54609	54609					0.07410930965681928
SSFSFHFLGL	10	Unmodified	_SSFSFHFLGL_					0	0	0		ENST00000485631.1_1_22:18189492-18210297:+|nuORF	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	ENST00000485631.1_1_22:18189492-18210297:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.288330078125	2	571.287474	1140.5604	0.32585	0.00018615	-0.10949	-6.2553E-05	0.21635	0.0001236	571.2877949196636	62.451	0.3784	62.443	62.219	62.597	-0.0085564					23	13	2	0	0	0	0.30958	1	15422	15422		19.257	2.3147	1	223370			44948	11092	25980	25981	54610	54610					-0.004262570397258969
SSFSGLLRK	9	Unmodified	_SSFSGLLRK_					0	0	0		ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.78778076171875	2	497.787641	993.56073	0.30394	0.0001513	0.31927	0.00015893	0.62322	0.00031023	497.7876234478373	34.222	1.1352	34.222	33.808	34.943	0					102	40	4	0	0	0	0.00012108	1	6730	6730		137.42	54.895	1	2229100			44949	5619	25981	25982	54611	54611					0.06369162680130103
SSFSGLLRK	9	Unmodified	_SSFSGLLRK_					0	0	0		ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7878723144531	2	497.787641	993.56073	0.5265	0.00026209	-0.1776	-8.8408E-05	0.3489	0.00017368	497.7875163175595	34.039	1.0748	34.105	33.76	34.834	0.06636					91	38	3	0	0	0	0.00012108	1	6679	6679		137.42	54.895	1	2310300			44950	5619	25981	25982	54612	54612					0.06369162680130103
SSFSGLLRK	9	Unmodified	_SSFSGLLRK_					0	0	0		ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7878112792969	2	497.787641	993.56073	0.19807	9.8595E-05	0.12727	6.3353E-05	0.32533	0.00016195	497.78769726660056	34.035	1.117	34.101	33.739	34.856	0.0667					106	39	4	0	0	0	0.00018703	1	6675	6675		145.13	58.798	1	2490300			44951	5619	25981	25982	54613	54613					0.06369162680130103
SSFYNTKKK	9	Unmodified	_SSFYNTKKK_					0	0	0		ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7982177734375	2	551.798206	1101.58186	0.05686	3.1375E-05	0.26382	0.00014558	0.32068	0.00017695	551.7980596875494	13.423	0.27494	13.324	13.217	13.492	-0.099291					14	9	2	0	0	0	0.32371	1	435	435		5.2969	1.3525	1	95727			44952	6376	25982	25983	54614	54614					0.035131279889810685
SSFYNTKKK	9	Unmodified	_SSFYNTKKK_					0	0	0		ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.7978515625	2	551.798206	1101.58186	-0.02144	-1.1831E-05	0.08445	4.6599E-05	0.063009	3.4768E-05	551.7979419674772	13.448	0.24362	13.38	13.275	13.519	-0.067495					20	8	3	0	0	0	0.32638	1	430	430		4.897	1.3005	1	93106			44953	6376	25982	25983	54615	54615					0.035131279889810685
SSGDIFLEK	9	Unmodified	_SSGDIFLEK_					0	0	0		nc|ENSG00000070718|P53677-2|AP3M2;ENSG00000070718|ENST00000396926|AP3M2	nc|ENSG00000070718|P53677-2|AP3M2	nc|ENSG00000070718|P53677-2|AP3M2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2652282714844	2	498.25584	994.497126	0.58273	0.00029035	-0.2834	-0.00014121	0.29933	0.00014914	498.2556508705405	40.582	0.40813	40.582	40.388	40.796	0					27	14	2	0	0	0	0.0083763	2	8656	8656;8719		81.915	39.96	1	484770			44954	935	25983	25984	54616;54617	54616					-0.0003424254761057455
SSGDIFLEK	9	Unmodified	_SSGDIFLEK_					0	0	0		nc|ENSG00000070718|P53677-2|AP3M2;ENSG00000070718|ENST00000396926|AP3M2	nc|ENSG00000070718|P53677-2|AP3M2	nc|ENSG00000070718|P53677-2|AP3M2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2651672363281	2	498.25584	994.497126	0.58526	0.00029161	0.085677	4.2689E-05	0.67094	0.0003343	498.25585468811437	40.356	0.38314	40.449	40.284	40.667	0.09267					24	13	2	0	0	0	0.0066776	3	8611	8563;8611;8658		84.522	40.75	1	515180			44955	935	25983	25984	54618;54619;54620	54619					-0.0003424254761057455
SSGDIFLEK	9	Unmodified	_SSGDIFLEK_					0	0	0		nc|ENSG00000070718|P53677-2|AP3M2;ENSG00000070718|ENST00000396926|AP3M2	nc|ENSG00000070718|P53677-2|AP3M2	nc|ENSG00000070718|P53677-2|AP3M2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.2652587890625	2	498.25584	994.497126	0.51173	0.00025497	0.036419	1.8146E-05	0.54814	0.00027312	498.25585624658066	40.336	0.35694	40.436	40.26	40.617	0.099403					24	12	3	0	0	0	0.0066776	1	8590	8590		84.522	40.75	1	526760			44956	935	25983	25984	54621	54621					-0.0003424254761057455
SSGGLHLH	8	Unmodified	_SSGGLHLH_					0	0	0		ENST00000576794.5_1_17:7221531-7221930:-|nuORF;ENST00000572029.1_1_17:7221711-7224101:-|nuORF;ENST00000573186.5_3_17:7219444-7222432:-|nuORF;nc|ENSG00000215041|Q96JN8-2|NEURL4;ENSG00000215041|ENST00000399464|NEURL4	ENST00000576794.5_1_17:7221531-7221930:-|nuORF	ENST00000576794.5_1_17:7221531-7221930:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.72467041015625	2	404.209027	806.403501	-0.41108	-0.00016616	0.74116	0.00029959	0.33008	0.00013342	404.2090913344113	13.999	0.60581	13.999	13.872	14.478	0					27	20	3	0	0	0	0.34434	1	664	664		0.79363	0	1	66182			44957	8399	25984	25985	54622	54622					-0.007444971393738342
SSGGLHLH	8	Unmodified	_SSGGLHLH_					0	0	0		ENST00000576794.5_1_17:7221531-7221930:-|nuORF;ENST00000572029.1_1_17:7221711-7224101:-|nuORF;ENST00000573186.5_3_17:7219444-7222432:-|nuORF;nc|ENSG00000215041|Q96JN8-2|NEURL4;ENSG00000215041|ENST00000399464|NEURL4	ENST00000576794.5_1_17:7221531-7221930:-|nuORF	ENST00000576794.5_1_17:7221531-7221930:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	404.209027	806.403501	-0.51135	-0.00020669	0.6955	0.00028113	0.18416	7.4438E-05	404.20924437075655	14.079	0.52308	13.975	13.845	14.368	-0.10466	-0.0064216	4.6499E-05	NaN	0.79363	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83583			44958	8399	25984	25985							-0.007444971393738342
SSGGLHLH	8	Unmodified	_SSGGLHLH_					0	0	0		ENST00000576794.5_1_17:7221531-7221930:-|nuORF;ENST00000572029.1_1_17:7221711-7224101:-|nuORF;ENST00000573186.5_3_17:7219444-7222432:-|nuORF;nc|ENSG00000215041|Q96JN8-2|NEURL4;ENSG00000215041|ENST00000399464|NEURL4	ENST00000576794.5_1_17:7221531-7221930:-|nuORF	ENST00000576794.5_1_17:7221531-7221930:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	404.209027	806.403501	-0.46744	-0.00018894	0.49857	0.00020153	0.031135	1.2585E-05	404.20908537513714	14.036	0.37052	13.97	13.861	14.231	-0.066068	-0.011487	-0.0001127	NaN	0.79363	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60156			44959	8399	25984	25985							-0.007444971393738342
SSGLSLLH	8	Unmodified	_SSGLSLLH_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.56915283203125	2	407.226885	812.439217	-0.27319	-0.00011125	-0.070016	-2.8512E-05	-0.34321	-0.00013976	407.2267439646238	15.82	1.1345	15.82	15.413	16.548	0					60	39	2	0	0	0	0.34131	1	1093	1093		12.532	0	1	101000			44960	4462	25985	25986	54623	54623					0.025495403176250875
SSGPEKCALC	10	Unmodified	_SSGPEKCALC_					0	0	0			REV__ENST00000423400.5_1_1:11863371-11863530:-|nuORF	REV__ENST00000423400.5_1_1:11863371-11863530:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7202453613281	2	497.720252	993.425952	0.46107	0.00022949	-0.3865	-0.00019237	0.074578	3.7119E-05	497.720017249741	19.978	0.63069	19.862	19.579	20.209	-0.11592					36	21	2	0	0	0	0.40532	1	2395	2395		2.4985	0	1	63544	+		44961	20880	25986	25987	54624	54624					-0.07102401848305817
SSGPIQKP	8	Unmodified	_SSGPIQKP_					0	0	0		ENSG00000006611|ENST00000005226|USH1C;nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C	ENSG00000006611|ENST00000005226|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C	nc|ENSG00000006611|Q9Y6N9-4|USH1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5691833496094	2	407.226885	812.439217	-0.23282	-9.4812E-05	-0.085488	-3.4813E-05	-0.31831	-0.00012963	407.22671410969116	15.893	0.8323	15.781	15.31	16.142	-0.11176					47	27	2	0	0	0	0.34247	1	1132	1132		8.5933	0	1	120390			44962	364;12559	25987	25988	54625	54625					0.025495403176137188
SSGSRGNKLL	10	Unmodified	_SSGSRGNKLL_					0	0	0		ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3061828613281	2	509.78563	1017.55671	-0.18065	-9.209E-05	3.1795	0.0016209	2.9989	0.0015288	510.28965770531363	12.559	0.17443	12.491	12.345	12.519	-0.06806					7	5	2	0	0	0	0.32088	1	152	152		2.7352	0.89096	1	9241.8			44963	1811	25988	25989	54626	54626					0.048630731864250265
SSGTSLDSSPG	11	Unmodified	_SSGTSLDSSPG_					0	0	0			REV__ENSG00000107187|ENST00000371748|LHX3	REV__ENSG00000107187|ENST00000371748|LHX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7875671386719	2	497.719818	993.425084	0.51399	0.00025582	0.74225	0.00036943	1.2562	0.00062526	497.7202170381047	19.876	0.55324	19.82	19.595	20.149	-0.055693					33	19	2	0	0	0	0.33175	1	2382	2382		4.897	0.95262	1	57072	+		44964	14546	25989	25990	54627	54627					-0.07189201691971903
SSGVPNPPK	9	Unmodified	_SSGVPNPPK_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.737548828125	2	441.737617	881.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.234	1	21.234	20.734	21.734	0								0	0	0	0.18053	1	2779	2779		27.629	13.723	1				44965	2616	25990	25991	54628	54628					0.015209253463240202
SSGVPNPPK	9	Unmodified	_SSGVPNPPK_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7369384765625	2	441.737617	881.460681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.62	1	21.62	21.12	22.12	0								0	0	0	0.11932	1	2896	2896		41.84	12.758	1				44966	2616	25990	25991	54629	54629					0.015209253463240202
SSGVPNPPK	9	Unmodified	_SSGVPNPPK_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.73699951171875	2	441.737617	881.460681	0.22969	0.00010146	-1.1088	-0.00048982	-0.87915	-0.00038836	441.73702979098294	21.721	2.06	21.621	20.306	22.366	-0.10034					152	73	3	0	0	0	0.08298	1	2925	2925		60.074	23.947	1	522950			44967	2616	25990	25991	54630	54630					0.015209253463240202
SSGVPNPPK	9	Unmodified	_SSGVPNPPK_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7375793457031	2	441.737617	881.460681	0.18291	8.0798E-05	-1.0283	-0.00045424	-0.84538	-0.00037344	441.73703785244805	21.702	2.218	21.653	20.278	22.496	-0.049377					156	78	3	0	0	0	0.063853	2	2861	2785;2861		47.749	28.492	1	534120			44968	2616	25990	25991	54631;54632	54632					0.015209253463240202
SSHTSPTL	8	Unmodified	_SSHTSPTL_					0	0	0		ENST00000473633.1_1_7:150836881-150837205:+|nuORF	ENST00000473633.1_1_7:150836881-150837205:+|nuORF	ENST00000473633.1_1_7:150836881-150837205:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.5750732421875	2	415.20615	828.397747	-0.37285	-0.00015481	0.2116	8.7858E-05	-0.16125	-6.6954E-05	415.20629111105177	27.892	0.5064	27.892	27.7	28.207	0					27	17	2	0	0	0	0.29855	1	4809	4809		24.674	0	1	74996			44969	10907	25991	25992	54633	54633					-0.0233164044170735
SSHTSPTL	8	Unmodified	_SSHTSPTL_					0	0	0		ENST00000473633.1_1_7:150836881-150837205:+|nuORF	ENST00000473633.1_1_7:150836881-150837205:+|nuORF	ENST00000473633.1_1_7:150836881-150837205:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5750732421875	2	415.20615	828.397747	-0.067894	-2.819E-05	0.31206	0.00012957	0.24417	0.00010138	415.2063435786159	27.9	0.48223	27.895	27.684	28.167	-0.0042572					26	16	2	0	0	0	0.31934	1	4817	4817		18.135	0	1	145410			44970	10907	25991	25992	54634	54634					-0.0233164044170735
SSHTSTQL	8	Unmodified	_SSHTSTQL_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8880310058594	2	430.709057	859.40356	-0.0068123	-2.9341E-06	-1.8951	-0.00081625	-1.9019	-0.00081918	430.7079906386821	72.241	0.52075	72.241	71.827	72.348	0					26	18	2	0	0	0	0.34319	1	18367	18367		2.5775	0.27475	1	92053	+	+	44971	13275	25992	25993	54635	54635					-0.031765419300313624
SSHTSTQL	8	Unmodified	_SSHTSTQL_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	430.709057	859.40356	0.10637	4.5813E-05	-2.0004	-0.00086159	-1.894	-0.00081577	430.70798628085885	72.13	0.48459	72.187	71.977	72.462	0.056572	-0.026943	-4.5418E-05	NaN	2.5775	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103330	+	+	44972	13275	25992	25993							-0.031765419300313624
SSHVPIQKK	9	Unmodified	_SSHVPIQKK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.300537109375	2	512.300916	1022.58728	-0.19342	-9.9087E-05	-0.10515	-5.3869E-05	-0.29857	-0.00015296	512.3008269702595	12.883	0.23392	12.816	12.702	12.936	-0.067496					13	7	2	0	0	0	0.31417	1	278	278		6.7232	4.8789	1	56824			44973	5350	25993	25994	54636	54636					0.07688851571481337
SSHVPIQKK	9	Unmodified	_SSHVPIQKK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	512.300916	1022.58728	-0.025133	-1.2876E-05	-0.54962	-0.00028157	-0.57475	-0.00029444	512.3007468437692	12.83	0.44935	12.83	12.669	13.118	0	0.011537	-0.00023058	NaN	6.7232	23	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79685			44974	5350	25993	25994							0.07688851571481337
SSHVPIQKK	9	Unmodified	_SSHVPIQKK_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	512.300916	1022.58728	-0.056025	-2.8702E-05	-0.038647	-1.9799E-05	-0.094673	-4.8501E-05	512.3008800881958	12.909	0.37525	12.81	12.549	12.924	-0.099291	-0.008816	0.00029295	NaN	6.7232	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61992			44975	5350	25993	25994							0.07688851571481337
SSIGQLSLIPK	11	Unmodified	_SSIGQLSLIPK_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2771606445312	2	571.842613	1141.67067	0.63645	0.00036395	-0.49649	-0.00028392	0.13996	8.0033E-05	571.8424163247988	56.872	0.38476	56.853	56.619	57.004	-0.019077					17	13	2	0	0	0	0.3266	1	13655	13655		14.957	5.574	1	257450			44976	2427	25994	25995	54637	54637					0.10550543228669085
SSINLILGK	9	Unmodified	_SSINLILGK_					0	0	0			REV__ENST00000464104.5_1_9:98997744-99012284:-|nuORF	REV__ENST00000464104.5_1_9:98997744-99012284:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.9713439941406	2	472.792392	943.570232	0.40748	0.00019265	0.10661	5.0404E-05	0.51409	0.00024306	472.7923293038528	44.876	0.74969	44.951	44.697	45.446	0.07505					44	27	3	0	0	0	0.2422	1	9920	9920		19.362	3.2128	1	513040	+		44977	15491	25995	25996	54638	54638					0.0961893096566655
SSINLILGK	9	Unmodified	_SSINLILGK_					0	0	0			REV__ENST00000464104.5_1_9:98997744-99012284:-|nuORF	REV__ENST00000464104.5_1_9:98997744-99012284:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	472.792392	943.570232	0.27193	0.00012857	0.30508	0.00014424	0.57701	0.00027281	472.7923929685504	44.944	0.60675	44.944	44.684	45.291	0	0.0035733	6.6889E-05	NaN	19.362	37	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	524370	+		44978	15491	25995	25996							0.0961893096566655
SSINLILGK	9	Unmodified	_SSINLILGK_					0	0	0			REV__ENST00000464104.5_1_9:98997744-99012284:-|nuORF	REV__ENST00000464104.5_1_9:98997744-99012284:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	472.792392	943.570232	0.28006	0.00013241	0.40579	0.00019185	0.68585	0.00032426	472.7924472186326	44.859	0.58076	44.928	44.651	45.232	0.068569	-0.013356	0.00016211	NaN	19.362	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	575280	+		44979	15491	25995	25996							0.0961893096566655
SSISFMNYTG	10	Unmodified	_SSISFMNYTG_					0	0	0		ENSG00000113396|ENST00000262462|SLC27A6	ENSG00000113396|ENST00000262462|SLC27A6	ENSG00000113396|ENST00000262462|SLC27A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.329833984375	2	553.744782	1105.47501	0.5695	0.00031536	1.4877	0.00082382	2.0572	0.0011392	553.7454855674608	47.566	0.26182	47.613	47.51	47.772	0.04752					13	9	2	0	0	0	0.31358	1	10811	10811		13.906	8.6754	1	131670			44980	2502	25996	25997	54639	54639					-0.07350790287705422
SSKKMYKNT	9	Unmodified	_SSKKMYKNT_					0	0	0			REV__L1PREC2_dup3026|chr6:106728714-106729553:+|1.824721313870998|0.1686757992366395|3.44|534.0|16|3|sense	REV__L1PREC2_dup3026|chr6:106728714-106729553:+|1.824721313870998|0.1686757992366395|3.44|534.0|16|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.260009765625	2	543.784241	1085.55393	0.62893	0.000342	0.46318	0.00025187	1.0921	0.00059387	543.7844968117454	87.801	0.46477	87.801	87.584	88.049	0					36	22	2	0	0	0	0.26031	1	23215	23215		3.5965	1.019	1	99950	+		44981	22834	25997	25998	54640	54640					0.0145748173724769
SSKKMYKNT	9	Unmodified	_SSKKMYKNT_					0	0	0			REV__L1PREC2_dup3026|chr6:106728714-106729553:+|1.824721313870998|0.1686757992366395|3.44|534.0|16|3|sense	REV__L1PREC2_dup3026|chr6:106728714-106729553:+|1.824721313870998|0.1686757992366395|3.44|534.0|16|3|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.784241	1085.55393	0.68762	0.00037392	1.0121	0.00055034	1.6997	0.00092426	544.2860295219326	87.836	0.4513	87.833	87.5	87.952	-0.0028381	0.01637	0.00038114	NaN	3.5965	39	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137360	+		44982	22834	25997	25998							0.0145748173724769
SSKKRIKPHN	10	Unmodified	_SSKKRIKPHN_					0	0	0		ENST00000245441.9_2_14:51189430-51189472:-|nuORF	ENST00000245441.9_2_14:51189430-51189472:-|nuORF	ENST00000245441.9_2_14:51189430-51189472:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8566284179688	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.569	1	99.62	99.12	100.12	0.050888								0	0	0	0.37807	1	26631	26631		2.9952	0.93549	1				44983	8898	25998	25999	54641	54641					0.11018705648461946
SSKMVTLDSI	10	Oxidation (M)	_SSKM(Oxidation (M))VTLDSI_		SSKM(1)VTLDSI		SSKM(42)VTLDSI	0	0	1		nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2	nc|ENSG00000150893|Q5SZK8-2|FREM2	nc|ENSG00000150893|Q5SZK8-2|FREM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.78125	2	548.781364	1095.54818	0.56897	0.00031224	-0.96012	-0.0005269	-0.39115	-0.00021465	548.7809358240885	79.559	0.9863	79.621	79.141	80.127	0.061409					64	40	2	0	0	0	0.12791	1	20639	20639		41.956	41.956	1	1811900			44984	4927	25999	26000	54642	54642		608			0.004223384349415937
SSKMVTLDSI	10	Oxidation (M)	_SSKM(Oxidation (M))VTLDSI_		SSKM(1)VTLDSI		SSKM(42)VTLDSI	0	0	1		nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2	nc|ENSG00000150893|Q5SZK8-2|FREM2	nc|ENSG00000150893|Q5SZK8-2|FREM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7814331054688	2	548.781364	1095.54818	0.57034	0.00031299	-0.87944	-0.00048262	-0.3091	-0.00016963	548.7809781723289	79.678	1.103	79.649	79.128	80.231	-0.028923					96	41	3	0	0	0	0.12791	2	20630	20630;20680		41.956	41.956	1	1629000			44985	4927	25999	26000	54643;54644	54643		608			0.004223384349415937
SSKPYGPYDR	10	Unmodified	_SSKPYGPYDR_					0	0	0		MGAM|p.W1355Cfs*9|1|0.17|ENSG00000257335|chr7:142060315-142060315|G/-|frameshift_variant;nc|ENSG00000257335|O43451-1|MGAM;ENSG00000257335|ENST00000475668|MGAM	MGAM|p.W1355Cfs*9|1|0.17|ENSG00000257335|chr7:142060315-142060315|G/-|frameshift_variant	MGAM|p.W1355Cfs*9|1|0.17|ENSG00000257335|chr7:142060315-142060315|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.2831420898438	2	585.28292	1168.55129	0.024193	1.416E-05	-0.49215	-0.00028805	-0.46795	-0.00027389	585.2831242102781	14.624	0.52961	14.624	14.395	14.925	0					58	18	4	0	0	0	0.40532	1	803	803		2.4985	0.65425	1	333710			44986	8636	26000	26001	54645	54645					-0.026246503960464906
SSKVEAVPG	9	Unmodified	_SSKVEAVPG_					0	0	0			REV__nc|ENSG00000128283|Q00587-2|CDC42EP1	REV__nc|ENSG00000128283|Q00587-2|CDC42EP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.8945007324219	2	437.23745	872.460347	-0.06818	-2.9811E-05	-0.28346	-0.00012394	-0.35164	-0.00015375	437.23704809371253	19.457	0.45635	19.341	19.031	19.488	-0.11592					21	15	2	0	0	0	0.25843	1	2284	2284		5.7319	0	1	37939	+		44987	15367	26001	26002	54646	54646					0.019015056264720442
SSKYPFLLSRD	11	Unmodified	_SSKYPFLLSRD_					0	0	0		ENST00000530645.1_1_11:111866135-111866902:+|nuORF	ENST00000530645.1_1_11:111866135-111866902:+|nuORF	ENST00000530645.1_1_11:111866135-111866902:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2467041015625	3	438.23471	1311.6823	0.16778	7.3526E-05	-1.3808	-0.0006051	-1.213	-0.00053158	438.23470300648887	20.862	0.79813	20.862	20.57	21.368	0					52	27	3	0	0	0	0.46704	1	2700	2700		2.4348	0.18206	1	77814			44988	11618	26002	26003	54647	54647					0.0389274025199029
SSLCTHAI	8	Unmodified	_SSLCTHAI_					0	0	0			REV__ENST00000396908.8_2_19:36259471-36259852:+|nuORF	REV__ENST00000396908.8_2_19:36259471-36259852:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.574951171875	2	416.205096	830.395638	-0.2795	-0.00011633	0.13366	5.5628E-05	-0.14584	-6.0699E-05	416.2050036495578	27.601	0.88758	27.601	27.207	28.094	0					69	30	3	0	0	0	0.31934	1	4764	4764		24.674	7.7316	1	498690	+		44989	20659	26003	26004	54648	54648					-0.02634392451182066
SSLCTHAI	8	Unmodified	_SSLCTHAI_					0	0	0			REV__ENST00000396908.8_2_19:36259471-36259852:+|nuORF	REV__ENST00000396908.8_2_19:36259471-36259852:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.57489013671875	2	416.205096	830.395638	-0.13761	-5.7274E-05	-0.089754	-3.7356E-05	-0.22736	-9.463E-05	416.2049160885932	27.619	1.069	27.607	27.213	28.282	-0.01156					70	37	3	0	0	0	0.31375	1	4760	4760		26.341	9.399	1	597130	+		44990	20659	26003	26004	54649	54649					-0.02634392451182066
SSLDLYKFSRP	11	Unmodified	_SSLDLYKFSRP_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.2469787597656	3	438.23471	1311.6823	0.23578	0.00010333	-0.35069	-0.00015368	-0.11491	-5.0358E-05	438.23536029546244	20.885	0.64843	20.832	20.613	21.261	-0.05291					45	22	3	0	0	0	0.43513	1	2713	2713		6.6235	0	1	131190			44991	4987	26004	26005	54650	54650					0.038927402519675525
SSLEHATEK	9	Unmodified	_SSLEHATEK_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2486877441406	2	501.248546	1000.48254	0.017547	8.7953E-06	0.29068	0.0001457	0.30823	0.0001545	501.2486386655966	13.231	0.33757	13.231	13.09	13.427	0					25	11	3	0	0	0	0.043711	1	366	366		55.235	38.122	1	184000			44992	6812	26005	26006	54651	54651					-0.017683146957665485
SSLEHATEK	9	Unmodified	_SSLEHATEK_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2486267089844	2	501.248546	1000.48254	-0.00068692	-3.4432E-07	0.28259	0.00014165	0.2819	0.0001413	501.24863342623973	13.3	0.34704	13.2	13.069	13.416	-0.099291					25	11	3	0	0	0	0.073988	1	397	397		43.982	33.908	1	204310			44993	6812	26005	26006	54652	54652					-0.017683146957665485
SSLEHATEK	9	Unmodified	_SSLEHATEK_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2485046386719	2	501.248546	1000.48254	-0.059035	-2.9591E-05	0.30288	0.00015182	0.24384	0.00012222	501.24868579318803	13.295	0.41733	13.228	13.102	13.519	-0.067496					32	14	4	0	0	0	0.073988	1	383	383		43.982	30.076	1	180690			44994	6812	26005	26006	54653	54653					-0.017683146957665485
SSLETHPLEN	10	Unmodified	_SSLETHPLEN_					0	0	0			REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.2896118164062	2	563.772385	1125.53022	0.63479	0.00035788	-1.7474	-0.00098515	-1.1126	-0.00062727	564.2721395261859	50.782	1.4297	50.782	50.001	51.43	0					143	52	4	0	0	0	0.31867	1	11861	11861		18.146	1.5805	1	1072900	+		44995	15664	26006	26007	54654	54654					-0.027526604955710354
SSLETHPLEN	10	Unmodified	_SSLETHPLEN_					0	0	0			REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.28955078125	2	563.772385	1125.53022	0.74089	0.00041769	-1.8959	-0.0010689	-1.155	-0.00065117	564.2720906175007	50.734	1.6018	50.78	49.852	51.454	0.046387					159	59	4	0	0	0	0.31867	1	11848	11848		18.146	1.5805	1	1024200	+		44996	15664	26006	26007	54655	54655					-0.027526604955710354
SSLFSGILK	9	Unmodified	_SSLFSGILK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.3154296875	2	476.279118	950.543683	-0.081515	-3.8824E-05	-0.68368	-0.00032562	-0.76519	-0.00036445	476.27908650131803	59.618	0.3575	59.713	59.604	59.961	0.095093					22	12	2	0	0	0	0.1335	1	14532	14532		40.239	17.503	1	215780			44997	8602	26007	26008	54656	54656					0.06643242074346745
SSLFSGILK	9	Unmodified	_SSLFSGILK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.3155212402344	2	476.279118	950.543683	0.24793	0.00011808	-0.72212	-0.00034393	-0.47419	-0.00022585	476.27889267894295	59.826	0.29377	59.814	59.621	59.915	-0.011486					16	9	2	0	0	0	0.12329	1	14577	14577		49.554	15.153	1	208910			44998	8602	26007	26008	54657	54657					0.06643242074346745
SSLFSLLSK	9	Unmodified	_SSLFSLLSK_					0	0	0		ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2845764160156	2	491.2844	980.554247	0.44886	0.00022052	0.37659	0.00018501	0.82546	0.00040553	491.28425874805464	48.985	1.0672	48.985	48.448	49.516	0					82	38	4	0	0	0	0.0054984	1	11219	11219		86.332	13.364	1	2297700			44999	4400	26008	26009	54658	54658					0.06319224728758854
SSLFSLLSK	9	Unmodified	_SSLFSLLSK_					0	0	0		ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.2845764160156	2	491.2844	980.554247	0.37353	0.00018351	-0.082123	-4.0346E-05	0.29141	0.00014316	491.28423884767926	48.97	0.85223	49.015	48.768	49.621	0.044891					77	30	3	0	0	0	0.0037449	3	11261	11216;11261;11304		96.367	10.035	1	2582100			45000	4400	26008	26009	54659;54660;54661	54660					0.06319224728758854
SSLFSLLSK	9	Unmodified	_SSLFSLLSK_					0	0	0		ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	ENSG00000141627|ENST00000675505|DYM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2845458984375	2	491.2844	980.554247	0.20246	9.9466E-05	0.067401	3.3113E-05	0.26986	0.00013258	491.2842789275767	48.906	0.99713	48.938	48.684	49.681	0.032043					82	35	3	0	0	0	0.0037449	2	11250	11199;11250		96.367	9.5071	1	2702300			45001	4400	26008	26009	54662;54663	54663					0.06319224728758854
SSLGKELAP	9	Unmodified	_SSLGKELAP_					0	0	0			REV__ENST00000418945.1_1_6:99873507-99873624:+|nuORF	REV__ENST00000418945.1_1_6:99873507-99873624:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7609558105469	2	451.2531	900.491647	0.019122	8.6289E-06	-0.22785	-0.00010282	-0.20873	-9.4188E-05	451.2529066451578	23.564	0.75061	23.564	23.278	24.029	0					62	25	4	0	0	0	0.23235	1	3456	3456		21.537	2.28	1	313640	+		45002	20839	26009	26010	54664	54664					0.037420786605594
SSLISSFPLLK	11	Unmodified	_SSLISSFPLLK_					0	0	0		ENSG00000243955|ENST00000334575|GSTA1;ENSG00000244067|ENST00000493422|GSTA2;ENSG00000182793|ENST00000370989|GSTA5	ENSG00000243955|ENST00000334575|GSTA1	ENSG00000243955|ENST00000334575|GSTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.35302734375	2	596.352814	1190.69108	0.54064	0.00032241	0.010897	6.4982E-06	0.55154	0.00032891	596.3528346996161	72.045	0.81627	72.045	71.664	72.48	0					80	29	4	0	0	0	1.6866E-05	1	18315	18315		117.84	64.434	1	685900			45003	8563	26010	26011	54665	54665					0.10335713888457576
SSLISSFPLLK	11	Unmodified	_SSLISSFPLLK_					0	0	0		ENSG00000243955|ENST00000334575|GSTA1;ENSG00000244067|ENST00000493422|GSTA2;ENSG00000182793|ENST00000370989|GSTA5	ENSG00000243955|ENST00000334575|GSTA1	ENSG00000243955|ENST00000334575|GSTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.3530883789062	2	596.352814	1190.69108	0.60941	0.00036342	-0.092726	-5.5297E-05	0.51668	0.00030812	596.3527303818244	72.026	0.78206	72.083	71.68	72.462	0.056572					78	28	4	0	0	0	0.00072509	1	18294	18294		100.71	62.094	1	781700			45004	8563	26010	26011	54666	54666					0.10335713888457576
SSLISSFPLLK	11	Unmodified	_SSLISSFPLLK_					0	0	0		ENSG00000243955|ENST00000334575|GSTA1;ENSG00000244067|ENST00000493422|GSTA2;ENSG00000182793|ENST00000370989|GSTA5	ENSG00000243955|ENST00000334575|GSTA1	ENSG00000243955|ENST00000334575|GSTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.3532104492188	2	596.352814	1190.69108	0.4951	0.00029525	0.001298	7.7404E-07	0.4964	0.00029603	596.3527594561841	72.116	0.80286	72.089	71.685	72.488	-0.027275					74	28	3	0	0	0	9.3071E-06	1	18322	18322		124.95	71.549	1	699360			45005	8563	26010	26011	54667	54667					0.10335713888457576
SSLKPIKNK	9	Unmodified	_SSLKPIKNK_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF;nc|ENSG00000164190|Q6KC79-3|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.81884765625	2	507.818941	1013.62333	-0.12343	-6.2681E-05	0.03396	1.7245E-05	-0.089472	-4.5436E-05	507.8188969342313	13.095	0.31088	13.027	12.905	13.215	-0.067495					22	10	3	0	0	0	0.3208	1	333	333		5.7319	0	1	119040			45006	5810	26011	26012	54668	54668					0.11706308748318861
SSLLKKGRTF	10	Unmodified	_SSLLKKGRTF_					0	0	0			REV__ENST00000590596.1_1_18:57567361-57567811:+|nuORF	REV__ENST00000590596.1_1_18:57567361-57567811:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.3091430664062	2	568.842948	1135.67134	0.56139	0.00031935	-0.16848	-9.5837E-05	0.39292	0.00022351	568.8427440810932	55.425	0.35568	55.496	55.347	55.703	0.070885					18	12	2	0	0	0	0.31794	1	13189	13189		8.1555	2.3951	1	257140	+		45007	22554	26012	26013	54669	54669					0.10893382668359664
SSLLPAKIF	9	Unmodified	_SSLLPAKIF_					0	0	0		ENSG00000103044|ENST00000569188|HAS3	ENSG00000103044|ENST00000569188|HAS3	ENSG00000103044|ENST00000569188|HAS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7629699707031	2	488.29731	974.580068	0.32296	0.0001577	0.086325	4.2152E-05	0.40928	0.00019985	488.2972800735689	63.256	0.2719	63.256	63.117	63.389	0					11	9	2	0	0	0	0.2322	1	15669	15669		20.454	20.454	1	153640			45008	1803	26013	26014	54670	54670					0.09176118971049618
SSLNHIVEK	9	Unmodified	_SSLNHIVEK_					0	0	0		nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;ENST00000491790.1_1_1:153733326-153733395:+|nuORF	nc|ENSG00000143624|Q68E01-3|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.29345703125	2	513.782556	1025.55056	0.38656	0.00019861	-0.71889	-0.00036935	-0.33232	-0.00017074	513.7821759150887	21.333	0.79005	21.333	20.973	21.763	0					73	27	4	0	0	0	0.0055839	1	2824	2824		108.26	41.805	1	380320			45009	4535	26014	26015	54671	54671					0.038805549548897034
SSLNHIVEK	9	Unmodified	_SSLNHIVEK_					0	0	0		nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;ENST00000491790.1_1_1:153733326-153733395:+|nuORF	nc|ENSG00000143624|Q68E01-3|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2898559570312	2	513.782556	1025.55056	0.2522	0.00012958	-0.46543	-0.00023913	-0.21323	-0.00010955	513.7823565629106	21.408	0.67908	21.359	21.066	21.745	-0.049377					57	23	3	0	0	0	0.11432	1	2798	2798		55.249	22.463	1	431230			45010	4535	26014	26015	54672	54672					0.038805549548897034
SSLPGRPSVI	10	Unmodified	_SSLPGRPSVI_					0	0	0		ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7926025390625	2	506.792924	1011.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.152	1	37.152	36.652	37.652	0								0	0	0	0.32365	1	7621	7621		24.991	0.97039	1				45011	705	26015	26016	54673	54673					0.06597145334569632
SSLPGVFKK	9	Unmodified	_SSLPGVFKK_					0	0	0		RECK|p.C724Vfs*109|1|0.15|ENSG00000122707|chr9:36117092-36117092|T/-|frameshift_variant;ENST00000475774.5_1_9:36036951-36066822:+|nuORF;ENST00000479053.1_1_9:36036974-36085209:+|nuORF;RECK|p.Y355Lfs*4|1|0.25|ENSG00000122707|chr9:36091319-36091320|-/T|frameshift_variant;ENSG00000122707|ENST00000377966|RECK	RECK|p.C724Vfs*109|1|0.15|ENSG00000122707|chr9:36117092-36117092|T/-|frameshift_variant;ENSG00000122707|ENST00000377966|RECK	RECK|p.C724Vfs*109|1|0.15|ENSG00000122707|chr9:36117092-36117092|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.24847412109375	2	481.78711	961.559667	-0.015388	-7.4138E-06	0.90278	0.00043495	0.88739	0.00042753	481.7873462843337	31.39	0.4089	31.39	31.144	31.553	0					26	14	2	0	0	0	0.25323	1	5848	5848		10.074	1.4806	1	123550			45012	13061;3064	26016	26017	54674	54674					0.07734948311224343
SSLPTQLFK	9	Unmodified	_SSLPTQLFK_					0	0	0		ENSG00000017427|ENST00000337514|IGF1;nc|ENSG00000017427|P05019-4|IGF1;nc|ENSG00000017427|P05019|IGF1	ENSG00000017427|ENST00000337514|IGF1	ENSG00000017427|ENST00000337514|IGF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.7900390625	2	510.78985	1019.56515	0.42936	0.00021931	-0.19436	-9.9278E-05	0.235	0.00012003	510.7898013096808	51.423	1.2888	51.423	50.978	52.267	0					121	47	4	0	0	0	4.1496E-11	2	11983	11983;12030		189.73	116.76	1	9527200			45013	488	26017	26018	54675;54676	54675					0.056146271030456774
SSLPTQLFK	9	Unmodified	_SSLPTQLFK_					0	0	0		ENSG00000017427|ENST00000337514|IGF1;nc|ENSG00000017427|P05019-4|IGF1;nc|ENSG00000017427|P05019|IGF1	ENSG00000017427|ENST00000337514|IGF1	ENSG00000017427|ENST00000337514|IGF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.7901306152344	2	510.78985	1019.56515	0.26792	0.00013685	-0.058911	-3.0091E-05	0.20901	0.00010676	510.78988531302963	51.399	1.2393	51.446	51.011	52.25	0.046574					115	45	4	0	0	0	9.5135E-08	2	11983	11983;12034		176.43	101.5	1	10277000			45014	488	26017	26018	54677;54678	54677					0.056146271030456774
SSLPTQLFK	9	Unmodified	_SSLPTQLFK_					0	0	0		ENSG00000017427|ENST00000337514|IGF1;nc|ENSG00000017427|P05019-4|IGF1;nc|ENSG00000017427|P05019|IGF1	ENSG00000017427|ENST00000337514|IGF1	ENSG00000017427|ENST00000337514|IGF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.7900390625	2	510.78985	1019.56515	0.27387	0.00013989	0.0041356	2.1124E-06	0.278	0.000142	510.78987741456046	51.489	1.5681	51.498	50.937	52.506	0.0095634					134	58	4	0	0	0	6.549E-06	2	11992	11992;12035		155.95	81.025	1	10137000			45015	488	26017	26018	54679;54680	54679					0.056146271030456774
SSLPTVGVFAK	11	Unmodified	_SSLPTVGVFAK_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-5|AIFM1;nc|ENSG00000156709|O95831-2|AIFM1;nc|ENSG00000156709|O95831-3|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8245239257812	2	553.316232	1104.61791	0.44579	0.00024666	-0.18451	-0.00010209	0.26128	0.00014457	553.3158150629158	53.24	0.90145	53.24	52.875	53.776	0					86	33	3	0	0	0	0.26453	1	12493	12493		37.075	5.8063	1	4790800			45016	5251	26018	26019	54681	54681					0.06978585165848017
SSLPTVGVFAK	11	Unmodified	_SSLPTVGVFAK_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-5|AIFM1;nc|ENSG00000156709|O95831-2|AIFM1;nc|ENSG00000156709|O95831-3|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3167114257812	2	553.316232	1104.61791	0.51696	0.00028604	0.028424	1.5728E-05	0.54538	0.00030177	553.3157469661189	53.217	1.0137	53.273	52.966	53.98	0.056255					104	37	4	0	0	0	0.022858	1	12626	12626		61.09	41.728	1	4931000			45017	5251	26018	26019	54682	54682					0.06978585165848017
SSLPTVGVFAK	11	Unmodified	_SSLPTVGVFAK_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-5|AIFM1;nc|ENSG00000156709|O95831-2|AIFM1;nc|ENSG00000156709|O95831-3|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3164672851562	2	553.316232	1104.61791	0.39021	0.00021591	0.37363	0.00020674	0.76384	0.00042265	553.3159515566459	53.314	1.3686	53.304	52.92	54.289	-0.0096054					119	50	4	0	0	0	3.6807E-06	1	12545	12545		135.72	95.479	1	4874500			45018	5251	26018	26019	54683	54683					0.06978585165848017
SSLPVSLTK	9	Unmodified	_SSLPVSLTK_					0	0	0		ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.27618408203125	2	466.276575	930.538597	0.17532	8.1746E-05	-0.2256	-0.00010519	-0.050285	-2.3447E-05	466.2763770325665	40.686	0.49994	40.779	40.531	41.031	0.09267					45	18	3	0	0	0	0.069258	1	8682	8682		45.74	9.2337	1	905260			45019	7236	26019	26020	54684	54684					0.07054938211706485
SSLPVSLTK	9	Unmodified	_SSLPVSLTK_					0	0	0		ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.27618408203125	2	466.276575	930.538597	0.18268	8.5179E-05	-0.33851	-0.00015784	-0.15583	-7.2661E-05	466.27631121668367	40.638	0.48315	40.737	40.479	40.962	0.099407					43	17	3	0	0	0	0.038291	1	8658	8658		57.249	3.8451	1	862240			45020	7236	26019	26020	54685	54685					0.07054938211706485
SSLSAEAIRQR	11	Unmodified	_SSLSAEAIRQR_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.3334350585938	2	609.333476	1216.6524	0.29159	0.00017768	0.17704	0.00010788	0.46863	0.00028555	609.3333167913665	26.478	0.40055	26.439	26.263	26.664	-0.038671					32	13	3	0	0	0	0.41892	1	4384	4384		7.1017	0.37856	1	176220			45021	2631	26020	26021	54686	54686					0.05273801306634596
SSLSAEAIRQR	11	Unmodified	_SSLSAEAIRQR_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.3336181640625	2	609.333476	1216.6524	0.44424	0.00027069	-0.032297	-1.968E-05	0.41194	0.00025101	609.3333760988817	26.559	0.40534	26.537	26.356	26.762	-0.022236					29	13	3	0	0	0	0.41892	1	4406	4406		7.1017	1.8048	1	185630			45022	2631	26020	26021	54687	54687					0.05273801306634596
SSLSLFFRK	9	Unmodified	_SSLSLFFRK_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8114624023438	2	542.811116	1083.60768	0.56718	0.00030787	0.13459	7.3057E-05	0.70177	0.00038093	542.811202039881	48.887	0.80177	48.887	48.606	49.408	0					65	28	3	0	0	0	0.00012108	2	11246	11195;11246		137.42	62.495	1	2538800			45023	1836	26021	26022	54688;54689	54689					0.06922022231265146
SSLSLFFRK	9	Unmodified	_SSLSLFFRK_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8116455078125	2	542.811116	1083.60768	0.61802	0.00033547	0.16836	9.139E-05	0.78639	0.00042686	542.811221793089	48.929	1.1521	48.974	48.363	49.515	0.044891					79	41	3	0	0	0	0.00012108	3	11245	11199;11245;11293		137.42	72.189	1	2134300			45024	1836	26021	26022	54690;54691;54692	54691					0.06922022231265146
SSLSLFFRK	9	Unmodified	_SSLSLFFRK_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8114013671875	2	542.811116	1083.60768	0.50606	0.00027469	0.36791	0.00019971	0.87397	0.0004744	542.8112618773938	48.817	0.8917	48.849	48.549	49.441	0.032043					73	31	3	0	0	0	0.00078391	2	11196	11154;11196		125.53	73.261	1	2193900			45025	1836	26021	26022	54693;54694	54694					0.06922022231265146
SSLSRFLMV	9	Oxidation (M)	_SSLSRFLM(Oxidation (M))V_		SSLSRFLM(1)V		SSLSRFLM(81)V	0	0	1		nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2810668945312	2	528.281334	1054.54812	0.20631	0.00010899	0.094262	4.9797E-05	0.30057	0.00015879	528.2811336397249	60.224	0.95311	60.224	59.897	60.851	0					93	34	4	0	0	0	0.0091837	3	14704	14655;14704;14752		80.676	39.402	1	4724200			45026	666	26022	26023	54695;54696;54697	54696		79			0.023023832256058085
SSLSRFLMV	9	Oxidation (M)	_SSLSRFLM(Oxidation (M))V_		SSLSRFLM(1)V		SSLSRFLM(90)V	0	0	1		nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2811889648438	2	528.281334	1054.54812	-0.11815	-6.2418E-05	0.41165	0.00021747	0.2935	0.00015505	528.2813885448874	60.119	1.0386	60.214	59.855	60.894	0.095093					105	37	4	0	0	0	0.0045319	3	14663	14617;14663;14706		90.135	46.363	1	5221200			45027	666	26022	26023	54698;54699;54700	54699		79			0.023023832256058085
SSLSRFLMV	9	Oxidation (M)	_SSLSRFLM(Oxidation (M))V_		SSLSRFLM(1)V		SSLSRFLM(81)V	0	0	1		nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2811889648438	2	528.281334	1054.54812	0.41633	0.00021994	0.21295	0.0001125	0.62928	0.00033244	528.2811712740496	60.317	1.0368	60.306	59.85	60.886	-0.011486					114	37	4	0	0	0	0.0091837	2	14711	14711;14755		80.676	36.904	1	5026900			45028	666	26022	26023	54701;54702	54701		79			0.023023832256058085
SSLYIILKK	9	Unmodified	_SSLYIILKK_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.839599609375	2	532.839342	1063.66413	0.47561	0.00025342	0.099819	5.3188E-05	0.57543	0.00030661	532.8392893850502	43.312	0.8668	43.312	42.982	43.849	0					88	31	4	0	0	0	0.0024096	1	9466	9466		106.94	21.299	1	2923300			45029	5182	26023	26024	54703	54703					0.13484650067948678
SSLYIILKK	9	Unmodified	_SSLYIILKK_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.839599609375	2	532.839342	1063.66413	0.48373	0.00025775	0.10409	5.5462E-05	0.58781	0.00031321	532.8392935975328	43.113	0.82704	43.191	42.884	43.711	0.078506					88	29	4	0	0	0	0.0024096	2	9452	9452;9507		106.94	10.574	1	3435900			45030	5182	26023	26024	54704;54705	54704					0.13484650067948678
SSLYIILKK	9	Unmodified	_SSLYIILKK_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8394775390625	2	532.839342	1063.66413	0.36803	0.0001961	0.1787	9.5221E-05	0.54673	0.00029132	532.8393429623644	43.067	0.94572	43.152	42.846	43.791	0.084446					95	34	4	0	0	0	0.0028626	2	9392	9392;9491		103.35	13.925	1	3221500			45031	5182	26023	26024	54706;54707	54706					0.13484650067948678
SSMDTTLILK	10	Oxidation (M)	_SSM(Oxidation (M))DTTLILK_		SSM(1)DTTLILK		SSM(100)DTTLILK	0	0	1		nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;nc|ENSG00000143702|Q5SW79-2|CEP170;ENST00000502249.6_1_4:119435248-119475252:+|nuORF	nc|ENSG00000143702|Q5SW79-3|CEP170	nc|ENSG00000143702|Q5SW79-3|CEP170	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.7969970703125	2	562.797014	1123.57948	0.24999	0.0001407	-0.27724	-0.00015603	-0.027247	-1.5334E-05	562.7968016439536	39.414	0.63831	39.507	39.278	39.917	0.09267					49	22	3	0	0	0	0.0066136	1	8345	8345		104.48	75.99	1	650660			45032	4541	26024	26025	54708	54708		571			0.022629114690062124
SSMDTTLILK	10	Oxidation (M)	_SSM(Oxidation (M))DTTLILK_		SSM(1)DTTLILK		SSM(67)DTTLILK	0	0	1		nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;nc|ENSG00000143702|Q5SW79-2|CEP170;ENST00000502249.6_1_4:119435248-119475252:+|nuORF	nc|ENSG00000143702|Q5SW79-3|CEP170	nc|ENSG00000143702|Q5SW79-3|CEP170	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.797119140625	2	562.797014	1123.57948	0.2877	0.00016192	-0.18909	-0.00010642	0.098607	5.5496E-05	562.7967998549291	39.342	0.58067	39.442	39.236	39.817	0.099403					43	20	3	0	0	0	0.09976	1	8337	8337		67.081	48.934	1	613440			45033	4541	26024	26025	54709	54709		571			0.022629114690062124
SSMDTTLILK	10	Oxidation (M)	_SSM(Oxidation (M))DTTLILK_					0	0	1		nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;nc|ENSG00000143702|Q5SW79-2|CEP170;ENST00000502249.6_1_4:119435248-119475252:+|nuORF	nc|ENSG00000143702|Q5SW79-3|CEP170	nc|ENSG00000143702|Q5SW79-3|CEP170	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	562.797014	1123.57948	-0.061192	-3.4439E-05	0.28274	0.00015912	0.22155	0.00012469	562.7970402930482	39.497	0.64454	39.497	39.242	39.886	0	0.015134	0.00032753	NaN	104.48	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	713920			45034	4541	26024	26025				571			0.022629114690062124
SSMSAQLLYK	10	Oxidation (M)	_SSM(Oxidation (M))SAQLLYK_		SSM(1)SAQLLYK		SSM(130)SAQLLYK	0	0	1		ENST00000570934.5_1_17:4098183-4145738:-|nuORF;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	ENST00000570934.5_1_17:4098183-4145738:-|nuORF	ENST00000570934.5_1_17:4098183-4145738:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2891845703125	2	572.289356	1142.56416	0.14442	8.2649E-05	0.068333	3.9106E-05	0.21275	0.00012176	572.2895585317128	32.998	0.92654	32.998	32.72	33.646	0					84	32	3	0	0	0	0.00015406	2	6349	6349;6397		132.13	101.91	1	534210			45035	7552	26025	26026	54710;54711	54710		830			-0.0014195532817211642
SSMSAQLLYK	10	Oxidation (M)	_SSM(Oxidation (M))SAQLLYK_		SSM(1)SAQLLYK		SSM(55)SAQLLYK	0	0	1		ENST00000570934.5_1_17:4098183-4145738:-|nuORF;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	ENST00000570934.5_1_17:4098183-4145738:-|nuORF	ENST00000570934.5_1_17:4098183-4145738:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2894287109375	2	572.289356	1142.56416	0.31375	0.00017956	0.18454	0.00010561	0.49829	0.00028517	572.2894970977803	33.089	0.76894	33.145	32.704	33.473	0.055313					71	27	3	0	0	0	0.067194	1	6432	6432		55.249	35.992	1	523740			45036	7552	26025	26026	54712	54712		830			-0.0014195532817211642
SSMSAQLLYK	10	Oxidation (M)	_SSM(Oxidation (M))SAQLLYK_		SSM(1)SAQLLYK		SSM(98)SAQLLYK	0	0	1		ENST00000570934.5_1_17:4098183-4145738:-|nuORF;ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	ENST00000570934.5_1_17:4098183-4145738:-|nuORF	ENST00000570934.5_1_17:4098183-4145738:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2896118164062	2	572.289356	1142.56416	0.18011	0.00010308	0.28552	0.0001634	0.46563	0.00026647	572.289653681023	32.902	0.85519	32.957	32.739	33.594	0.054371					74	30	3	0	0	0	0.0039563	2	6305	6305;6439		97.741	67.516	1	661940			45037	7552	26025	26026	54713;54714	54713		830			-0.0014195532817211642
SSMTAVLQK	9	Oxidation (M)	_SSM(Oxidation (M))TAVLQK_		SSM(1)TAVLQK		SSM(80)TAVLQK	0	0	1		ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7578430175781	2	490.757692	979.500831	0.31712	0.00015563	0.39312	0.00019293	0.71025	0.00034856	490.7576320093495	20.164	0.77423	20.164	19.739	20.514	0					52	28	2	0	0	0	0.0098873	2	2408	2408;2453		79.596	55.576	1	244400			45038	10866	26026	26027	54715;54716	54715		950			0.010261039546094253
SSMTAVLQK	9	Oxidation (M)	_SSM(Oxidation (M))TAVLQK_		SSM(1)TAVLQK		SSM(90)TAVLQK	0	0	1		ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7577819824219	2	490.757692	979.500831	0.5117	0.00025112	0.11946	5.8626E-05	0.63116	0.00030975	490.75762337790724	20.391	0.90697	20.281	19.846	20.753	-0.11003					67	32	3	0	0	0	0.0045319	3	2464	2464;2511;2580		90.135	62.506	1	261150			45039	10866	26026	26027	54717;54718;54719	54717		950			0.010261039546094253
SSMTAVLQK	9	Oxidation (M)	_SSM(Oxidation (M))TAVLQK_		SSM(1)TAVLQK		SSM(96)TAVLQK	0	0	1		ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	ENST00000470658.1_1_21:44293721-44296875:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7575378417969	2	490.757692	979.500831	0.62017	0.00030435	-0.18946	-9.2979E-05	0.43071	0.00021138	490.757376569019	20.326	0.8221	20.274	19.791	20.613	-0.05291					54	29	2	0	0	0	0.0037449	2	2489	2438;2489		96.367	64.061	1	276470			45040	10866	26026	26027	54720;54721	54721		950			0.010261039546094253
SSMVGVNLPQK	11	Oxidation (M)	_SSM(Oxidation (M))VGVNLPQK_		SSM(1)VGVNLPQK		SSM(100)VGVNLPQK	0	0	1		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3084106445312	2	588.308081	1174.60161	-0.72457	-0.00042627	0.44149	0.00025973	-0.28309	-0.00016654	588.308297024043	34.605	0.6363	34.605	34.306	34.943	0					52	22	3	0	0	0	0.00045437	2	6813	6813;6863		104.48	77.261	1	499550			45041	1747	26027	26028	54722;54723	54722		214			0.02129135937434512
SSMVGVNLPQK	11	Oxidation (M)	_SSM(Oxidation (M))VGVNLPQK_		SSM(1)VGVNLPQK		SSM(110)VGVNLPQK	0	0	1		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.3081665039062	2	588.308081	1174.60161	-0.86573	-0.00050932	0.38922	0.00022898	-0.47651	-0.00028034	588.3083555014847	34.457	0.63036	34.532	34.273	34.904	0.075306					52	22	3	0	0	0	2.4351E-05	2	6796	6796;6845		110.79	80.952	1	388840			45042	1747	26027	26028	54724;54725	54724		214			0.02129135937434512
SSMVGVNLPQK	11	Oxidation (M)	_SSM(Oxidation (M))VGVNLPQK_		SSM(1)VGVNLPQK		SSM(110)VGVNLPQK	0	0	1		nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	nc|ENSG00000102144|P00558-2|PGK1	nc|ENSG00000102144|P00558-2|PGK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.3080444335938	2	588.308081	1174.60161	-0.14836	-8.7279E-05	-0.60759	-0.00035745	-0.75594	-0.00044473	588.3077653392276	34.482	0.6728	34.559	34.22	34.893	0.077377					56	23	3	0	0	0	2.0745E-05	2	6807	6756;6807		114.19	85.802	1	463180			45043	1747	26027	26028	54726;54727	54727		214			0.02129135937434512
SSNIFTVAK	9	Unmodified	_SSNIFTVAK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7663269042969	2	483.766374	965.518196	-0.1295	-6.2648E-05	-0.16569	-8.0153E-05	-0.29519	-0.0001428	483.7663306501391	38.714	0.86465	38.714	38.377	39.242	0					78	30	5	0	0	0	5.6536E-07	2	8070	8070;8119		158.08	58.322	1	1861500			45044	1556	26028	26029	54728;54729	54728					0.03405767551896588
SSNIFTVAK	9	Unmodified	_SSNIFTVAK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.76629638671875	2	483.766374	965.518196	0.25004	0.00012096	-0.57969	-0.00028043	-0.32965	-0.00015947	483.7661159993315	38.621	0.73544	38.712	38.399	39.135	0.090881					69	26	4	0	0	0	2.6179E-07	3	8090	8041;8090;8140		169.92	59.249	1	2099400			45045	1556	26028	26029	54730;54731;54732	54731					0.03405767551896588
SSNIFTVAK	9	Unmodified	_SSNIFTVAK_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7662048339844	2	483.766374	965.518196	0.40837	0.00019755	-0.84103	-0.00040686	-0.43266	-0.00020931	483.7660567563291	38.618	0.85293	38.715	38.437	39.29	0.097527					92	30	5	0	0	0	5.6536E-07	2	8081	8032;8081		158.08	68.676	1	2191400			45046	1556	26028	26029	54733;54734	54734					0.03405767551896588
SSNKALLEM	9	Oxidation (M)	_SSNKALLEM(Oxidation (M))_		SSNKALLEM(1)		SSNKALLEM(69)	0	0	1		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.75518798828125	2	504.755149	1007.49575	0.24388	0.0001231	0.065774	3.32E-05	0.30966	0.0001563	504.7550400347684	25.167	0.81015	25.167	24.872	25.683	0					59	27	3	0	0	0	0.016571	1	3999	3999		69.338	27.383	1	284000			45047	1243	26029	26030	54735	54735		147			-0.007701999080040878
SSNKALLEM	9	Oxidation (M)	_SSNKALLEM(Oxidation (M))_					0	0	1		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	504.755149	1007.49575	0.097872	4.9402E-05	-0.050157	-2.5317E-05	0.047716	2.4085E-05	504.7550951085599	25.219	0.75457	25.164	24.837	25.592	-0.055931	-0.018487	-7.3664E-05	NaN	69.338	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310100			45048	1243	26029	26030				147			-0.007701999080040878
SSNKALLEM	9	Oxidation (M)	_SSNKALLEM(Oxidation (M))_					0	0	1		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	504.755149	1007.49575	-0.095266	-4.8086E-05	0.016457	8.3068E-06	-0.078808	-3.9779E-05	504.7552283139194	25.247	0.87547	25.216	24.862	25.738	-0.031408	0.0335	-6.4161E-06	NaN	69.338	67	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315300			45049	1243	26029	26030				147			-0.007701999080040878
SSNLPVNNK	9	Unmodified	_SSNLPVNNK_					0	0	0		ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7592468261719	2	486.759081	971.503609	0.098077	4.774E-05	-0.47493	-0.00023117	-0.37685	-0.00018343	486.7590909386326	18.551	1.2731	18.551	18.158	19.431	0					160	44	6	0	0	0	0.00012746	3	1968	1922;1968;2010		136.39	88.046	1	2601800			45050	3931	26030	26031	54736;54737;54738	54737					0.016716954037633514
SSNLPVNNK	9	Unmodified	_SSNLPVNNK_					0	0	0		ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7773132324219	2	486.759081	971.503609	0.13467	6.5551E-05	-0.12563	-6.1153E-05	0.0090344	4.3976E-06	486.7591385436381	19.673	0.58448	19.673	19.401	19.986	0					27	20	2	0	0	0	0.25779	1	2265	2265		6.2058	2.6093	1	38900			45051	3931	26030	26031	54739	54739					0.016716954037633514
SSNLPVNNK	9	Unmodified	_SSNLPVNNK_					0	0	0		ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.75921630859375	2	486.759081	971.503609	0.082725	4.0267E-05	-0.43642	-0.00021243	-0.3537	-0.00017217	486.7590881028801	18.633	1.3688	18.516	18.117	19.486	-0.11739					165	47	6	0	0	0	5.4053E-05	3	2003	1959;2003;2047		148.27	90.546	1	2509000			45052	3931	26030	26031	54740;54741;54742	54741					0.016716954037633514
SSNLPVNNK	9	Unmodified	_SSNLPVNNK_					0	0	0		ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.75909423828125	2	486.759081	971.503609	-0.046251	-2.2513E-05	-0.23468	-0.00011423	-0.28093	-0.00013675	486.75915554752646	18.635	1.222	18.577	18.199	19.421	-0.058172					165	42	6	0	0	0	0.00012746	3	1954	1954;2003;2052		136.39	73.819	1	2845500			45053	3931	26030	26031	54743;54744;54745	54743					0.016716954037633514
SSNLTRHKK	9	Unmodified	_SSNLTRHKK_					0	0	0		nc|ENSG00000198039|Q14593-2|ZNF273;nc|ENSG00000105750|Q03923-2|ZNF85;ENSG00000198039|ENST00000476120|ZNF273;ENSG00000105750|ENST00000328178|ZNF85	nc|ENSG00000198039|Q14593-2|ZNF273	nc|ENSG00000198039|Q14593-2|ZNF273	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2696533203125	2	535.806897	1069.59924	0.48526	0.00026001	0.16377	8.7751E-05	0.64903	0.00034776	535.8065339639443	21.519	0.64747	21.469	21.207	21.855	-0.049377					36	22	2	0	0	0	0.25706	1	2947	2947		6.7232	0	1	127460			45054	2021	26031	26032	54746	54746					0.06722468314660546
SSNLTRHKK	9	Unmodified	_SSNLTRHKK_					0	0	0		nc|ENSG00000198039|Q14593-2|ZNF273;nc|ENSG00000105750|Q03923-2|ZNF85;ENSG00000198039|ENST00000476120|ZNF273;ENSG00000105750|ENST00000328178|ZNF85	nc|ENSG00000198039|Q14593-2|ZNF273	nc|ENSG00000198039|Q14593-2|ZNF273	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	535.806897	1069.59924	0.53036	0.00028417	0.55516	0.00029746	1.0855	0.00058163	535.8065365853319	21.442	0.56185	21.442	21.169	21.731	0	-0.0091697	4.751E-06	NaN	3.5965	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157700			45055	2021	26031	26032							0.06722468314660546
SSNLTRHKK	9	Unmodified	_SSNLTRHKK_					0	0	0		nc|ENSG00000198039|Q14593-2|ZNF273;nc|ENSG00000105750|Q03923-2|ZNF85;ENSG00000198039|ENST00000476120|ZNF273;ENSG00000105750|ENST00000328178|ZNF85	nc|ENSG00000198039|Q14593-2|ZNF273	nc|ENSG00000198039|Q14593-2|ZNF273	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	535.806897	1069.59924	0.47757	0.00025589	1.3921	0.00074591	1.8697	0.0010018	535.8065324242613	21.543	0.49444	21.443	21.188	21.682	-0.10034	-0.0087952	0.00090166	NaN	3.5965	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172560			45056	2021	26031	26032							0.06722468314660546
SSNMIINYRL	10	Unmodified	_SSNMIINYRL_					0	0	0			REV__ENSG00000179468|ENST00000350513|OR9A2	REV__ENSG00000179468|ENST00000350513|OR9A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.81591796875	2	605.816073	1209.61759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.956	1	25.917	25.417	26.417	-0.038671								0	0	0	0.38197	1	4211	4211		0.40072	0	1		+		45057	18077	26032	26033	54747	54747					0.021168421743368526
SSNSLYDK	8	Unmodified	_SSNSLYDK_					0	0	0			REV__ENST00000374481.7_1_2:204600776-204600923:+|nuORF	REV__ENST00000374481.7_1_2:204600776-204600923:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.74853515625	2	457.216714	912.418876	-0.055297	-2.5283E-05	0.27446	0.00012549	0.21916	0.0001002	457.2166731706775	17.685	0.51719	17.568	17.323	17.84	-0.11739					41	17	3	0	0	0	0.34167	1	1717	1717		11.64	0	1	115860	+		45058	20462	26033	26034	54748	54748					-0.0408367513284702
SSNSLYDK	8	Unmodified	_SSNSLYDK_					0	0	0			REV__ENST00000374481.7_1_2:204600776-204600923:+|nuORF	REV__ENST00000374481.7_1_2:204600776-204600923:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7485046386719	2	457.216714	912.418876	0.091618	4.1889E-05	0.18573	8.4917E-05	0.27734	0.00012681	457.21663138430955	17.593	0.68256	17.533	17.269	17.951	-0.060429					50	23	3	0	0	0	0.31088	1	1673	1673		28.487	0	1	122690	+		45059	20462	26033	26034	54749	54749					-0.0408367513284702
SSNSPISQR	9	Unmodified	_SSNSPISQR_					0	0	0		ENSG00000144909|ENST00000296220|OSBPL11	ENSG00000144909|ENST00000296220|OSBPL11	ENSG00000144909|ENST00000296220|OSBPL11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.27392578125	2	488.246338	974.478122	0.085706	4.1846E-05	0.46869	0.00022884	0.5544	0.00027068	488.24641150544966	16.241	0.49555	16.126	15.866	16.362	-0.11434					29	16	2	0	0	0	0.25949	1	1297	1297		4.897	4.897	1	66344			45060	4623	26034	26035	54750	54750					-0.010137791186480172
SSNSPISQR	9	Unmodified	_SSNSPISQR_					0	0	0		ENSG00000144909|ENST00000296220|OSBPL11	ENSG00000144909|ENST00000296220|OSBPL11	ENSG00000144909|ENST00000296220|OSBPL11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2462463378906	2	488.246338	974.478122	0.18691	9.1259E-05	-0.21701	-0.00010596	-0.030102	-1.4697E-05	488.24634879564235	16.133	0.48494	16.07	15.866	16.351	-0.062534					30	16	3	0	0	0	0.30459	1	1251	1251		8.1555	2.4237	1	67815			45061	4623	26034	26035	54751	54751					-0.010137791186480172
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2694091796875	2	499.269281	996.52401	0.064344	3.2125E-05	-0.2598	-0.00012971	-0.19546	-9.7586E-05	499.2694076904523	14.413	1.2538	14.413	14.191	15.445	0					116	43	5	0	0	0	8.5298E-05	2	743	743;789		143.21	63.617	1	5633200			45062	1233	26035	26036	54752;54753	54752					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2696228027344	2	499.269281	996.52401	0.075741	3.7815E-05	-0.2403	-0.00011998	-0.16456	-8.2161E-05	499.26942073349835	14.513	1.1663	14.408	14.185	15.352	-0.10466					113	40	5	0	0	0	1.3973E-05	2	770	770;822		154.75	65.352	1	5258000			45063	1233	26035	26036	54754;54755	54754					0.025608660635725755
SSNSYAIKK	9	Unmodified	_SSNSYAIKK_					0	0	0		ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58906030-58906114:+|nuORF	ENSG00000083845|ENST00000196551|RPS5	ENSG00000083845|ENST00000196551|RPS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.26947021484375	2	499.269281	996.52401	0.019329	9.6504E-06	-0.25978	-0.0001297	-0.24045	-0.00012005	499.26939865410884	14.506	1.1914	14.44	14.231	15.422	-0.066067					114	41	5	0	0	0	3.4262E-07	1	763	763		166.77	67.014	1	5981200			45064	1233	26035	26036	54756	54756					0.025608660635725755
SSNTFSIKK	9	Unmodified	_SSNTFSIKK_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;nc|ENSG00000105671|Q9Y6V7-2|DDX49;ENST00000595858.5_1_19:19032475-19037138:+|nuORF;ENST00000601803.5_1_19:19032626-19032992:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.276611328125	2	506.277106	1010.53966	0.17207	8.7114E-05	-0.76762	-0.00038863	-0.59555	-0.00030151	506.2765678399759	19.524	0.50186	19.524	19.375	19.877	0					23	17	2	0	0	0	0.33719	1	2310	2310		3.2813	1.4371	1	63262			45065	2006	26036	26037	54757	54757					0.034811525806162535
SSNTFSIKK	9	Unmodified	_SSNTFSIKK_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;nc|ENSG00000105671|Q9Y6V7-2|DDX49;ENST00000595858.5_1_19:19032475-19037138:+|nuORF;ENST00000601803.5_1_19:19032626-19032992:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	506.277106	1010.53966	0.2899	0.00014677	-1.057	-0.00053511	-0.76705	-0.00038834	506.2761714320061	19.723	0.57667	19.607	19.375	19.952	-0.11592	0.017855	-0.00025906	NaN	3.2813	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37628			45066	2006	26036	26037							0.034811525806162535
SSNTFSIKK	9	Unmodified	_SSNTFSIKK_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;nc|ENSG00000105671|Q9Y6V7-2|DDX49;ENST00000595858.5_1_19:19032475-19037138:+|nuORF;ENST00000601803.5_1_19:19032626-19032992:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	506.277106	1010.53966	0.35722	0.00018085	-0.46154	-0.00023367	-0.10432	-5.2814E-05	506.2765493440342	19.692	0.55779	19.636	19.395	19.953	-0.055691	0.047143	0.00034383	NaN	3.2813	30	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38244			45067	2006	26036	26037							0.034811525806162535
SSPKQYMQL	9	Oxidation (M)	_SSPKQYM(Oxidation (M))QL_		SSPKQYM(1)QL		SSPKQYM(65)QL	0	0	1		ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2686157226562	2	549.268424	1096.5223	0.26461	0.00014534	-0.064246	-3.5288E-05	0.20036	0.00011005	549.2683803238937	27.295	0.75223	27.295	26.979	27.732	0					74	25	4	0	0	0	0.01909	1	4603	4603		65.474	40.074	1	368260			45068	4798	26037	26038	54758	54758		598			-0.02210511016687633
SSPKQYMQL	9	Oxidation (M)	_SSPKQYM(Oxidation (M))QL_		SSPKQYM(1)QL		SSPKQYM(56)QL	0	0	1		ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2686157226562	2	549.268424	1096.5223	0.2884	0.00015841	-0.33346	-0.00018316	-0.045064	-2.4752E-05	549.268297564805	27.309	0.62624	27.288	27.015	27.641	-0.021412					67	21	4	0	0	0	0.04299	1	4600	4600		55.503	30.103	1	389220			45069	4798	26037	26038	54759	54759		598			-0.02210511016687633
SSPKQYMQL	9	Oxidation (M)	_SSPKQYM(Oxidation (M))QL_		SSPKQYM(1)QL		SSPKQYM(62)QL	0	0	1		ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2687377929688	2	549.268424	1096.5223	0.29319	0.00016104	-0.31272	-0.00017176	-0.019525	-1.0724E-05	549.2682869844155	27.372	0.66113	27.361	26.984	27.645	-0.011562					70	22	4	0	0	0	0.026579	1	4621	4621		61.602	36.203	1	381010			45070	4798	26037	26038	54760	54760		598			-0.02210511016687633
SSPSHLHT	8	Unmodified	_SSPSHLHT_					0	0	0		ENST00000486818.5_1_7:72951630-72952470:-|nuORF	ENST00000486818.5_1_7:72951630-72952470:-|nuORF	ENST00000486818.5_1_7:72951630-72952470:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.9033203125	2	433.211766	864.40898	-0.070143	-3.0387E-05	-0.28644	-0.00012409	-0.35658	-0.00015448	433.21159132511224	21.602	0.37318	21.553	21.344	21.717	-0.049377					20	12	2	0	0	0	0.34337	1	2922	2922		2.3027	0	1	41188			45071	11108	26038	26039	54761	54761					-0.028648183475752376
SSPSPGSSL	9	Unmodified	_SSPSPGSSL_					0	0	0		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5367431640625	2	409.698158	817.381762	-0.077069	-3.1575E-05	-0.19045	-7.8026E-05	-0.26752	-0.0001096	409.69813883582367	28.79	0.64319	28.79	28.446	29.089	0					38	22	3	0	0	0	0.1854	1	5048	5048		32.305	0	1	175060			45072	7574	26039	26040	54762	54762					-0.034233466785963174
SSPSTHHI	8	Unmodified	_SSPSTHHI_					0	0	0		nc|ENSG00000171495|Q7Z745-2|MROH2B;ENSG00000171495|ENST00000399564|MROH2B	nc|ENSG00000171495|Q7Z745-2|MROH2B	nc|ENSG00000171495|Q7Z745-2|MROH2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.9033203125	2	433.211766	864.40898	0.091193	3.9506E-05	0.22351	9.6827E-05	0.3147	0.00013633	433.2120449645964	21.559	0.37803	21.458	21.338	21.716	-0.10034					18	13	2	0	0	0	0.34353	1	2891	2891		4.756	0.42677	1	47343			45073	6549	26040	26041	54763	54763					-0.028648183475525002
SSQALGTIPK	10	Unmodified	_SSQALGTIPK_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7978210449219	2	501.284931	1000.55531	0.16184	8.1126E-05	0.35176	0.00017633	0.5136	0.00025746	501.2848475729266	31.398	1.03	31.398	30.553	31.583	0					52	36	3	0	0	0	0.33327	1	5907	5907		15.739	3.498	1	239490			45074	7708	26041	26042	54764	54764					0.05505439097657927
SSQALGTIPK	10	Unmodified	_SSQALGTIPK_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	501.284931	1000.55531	0.29561	0.00014818	0.4306	0.00021585	0.7262	0.00036403	501.2850594145068	31.36	0.35732	31.401	31.15	31.507	0.040991	0.0014418	4.1141E-05	NaN	15.739	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177280			45075	7708	26041	26042							0.05505439097657927
SSQAPCPMR	9	Unmodified	_SSQAPCPMR_					0	0	0			REV__ENSG00000170381|ENST00000643230|SEMA3E	REV__ENSG00000170381|ENST00000643230|SEMA3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7215270996094	2	488.720587	975.426621	0.39655	0.0001938	1.2391	0.00060557	1.6356	0.00079937	488.7210531184897	88.804	0.51637	88.802	88.561	89.078	-0.0015411					34	19	2	0	0	0	0.31763	2	23457	23457;23478		6.2058	1.4498	1	169340	+		45076	17578	26042	26043	54765;54766	54765					-0.0620756240857645
SSQAPCPMR	9	Unmodified	_SSQAPCPMR_					0	0	0			REV__ENSG00000170381|ENST00000643230|SEMA3E	REV__ENSG00000170381|ENST00000643230|SEMA3E	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	488.720587	975.426621	0.42606	0.00020822	1.1	0.00053759	1.5261	0.00074581	488.7210126709976	88.768	0.48078	88.768	88.503	88.984	0	-0.01719	-6.3758E-05	NaN	6.2058	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110800	+		45077	17578	26042	26043							-0.0620756240857645
SSQPQGALTL	10	Unmodified	_SSQPQGALTL_					0	0	0			REV__ENST00000605035.5_1_6:348606-348948:+|nuORF	REV__ENST00000605035.5_1_6:348606-348948:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2585144042969	2	501.266739	1000.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.594	1	80.594	80.094	81.094	0								0	0	0	0.35216	1	20955	20955		13.906	3.0821	1		+		45078	22654	26043	26044	54767	54767					0.01868562200957058
SSQPQGALTL	10	Unmodified	_SSQPQGALTL_					0	0	0			REV__ENST00000605035.5_1_6:348606-348948:+|nuORF	REV__ENST00000605035.5_1_6:348606-348948:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2582702636719	2	501.266739	1000.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.984	1	80.984	80.484	81.484	0								0	0	0	0.3629	1	21074	21074		9.3831	1.473	1		+		45079	22654	26043	26044	54768	54768					0.01868562200957058
SSQPQGALTL	10	Unmodified	_SSQPQGALTL_					0	0	0			REV__ENST00000605035.5_1_6:348606-348948:+|nuORF	REV__ENST00000605035.5_1_6:348606-348948:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.25872802734375	2	501.266739	1000.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.87	1	80.843	80.343	81.343	-0.026825								0	0	0	0.35216	1	21022	21022		13.906	1.3745	1		+		45080	22654	26043	26044	54769	54769					0.01868562200957058
SSQRSFVEFIL	11	Unmodified	_SSQRSFVEFIL_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.24688720703125	3	438.23471	1311.6823	0.23578	0.00010333	-0.35069	-0.00015368	-0.11491	-5.0358E-05	438.23536029546244	20.885	0.64843	20.832	20.613	21.261	-0.05291					45	22	3	0	0	0	0.44088	1	2663	2663		5.8681	0.084707	1	131190			45081	2224	26044	26045	54770	54770					0.0389274025199029
SSQTSGSLVSK	11	Unmodified	_SSQTSGSLVSK_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP;CDKN2AIP|p.I471Mfs*4|1|0.17|ENSG00000168564|chr4:183447096-183447096|T/-|frameshift_variant	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7799682617188	2	540.78021	1079.54587	0.45176	0.0002443	-0.41504	-0.00022444	0.036723	1.9859E-05	540.7797802699685	17.291	0.56787	17.291	17.122	17.69	0					36	18	3	0	0	0	0.32774	1	1600	1600		13.519	13.519	1	92088			45082	6284	26045	26046	54771	54771					0.009276260215074217
SSQTSGSLVSK	11	Unmodified	_SSQTSGSLVSK_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP;CDKN2AIP|p.I471Mfs*4|1|0.17|ENSG00000168564|chr4:183447096-183447096|T/-|frameshift_variant	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7799682617188	2	540.78021	1079.54587	0.28603	0.00015468	-0.20124	-0.00010883	0.084782	4.5848E-05	540.7800156715487	17.545	0.56392	17.428	17.162	17.726	-0.11739					32	18	2	0	0	0	0.1843	1	1662	1662		32.616	23.871	1	129580			45083	6284	26045	26046	54772	54772					0.009276260215074217
SSQTSGSLVSK	11	Unmodified	_SSQTSGSLVSK_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP;CDKN2AIP|p.I471Mfs*4|1|0.17|ENSG00000168564|chr4:183447096-183447096|T/-|frameshift_variant	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7800903320312	2	540.78021	1079.54587	0.52641	0.00028467	-0.72197	-0.00039043	-0.19556	-0.00010576	540.7797348997457	17.447	0.58419	17.386	17.152	17.736	-0.060429					40	19	3	0	0	0	0.258	1	1641	1641		25.997	17.252	1	111900			45084	6284	26045	26046	54773	54773					0.009276260215074217
SSQTTHGLYK	10	Unmodified	_SSQTTHGLYK_					0	0	0		nc|ENSG00000177614|Q8N414-2|PGBD5;ENSG00000177614|ENST00000391860|PGBD5	nc|ENSG00000177614|Q8N414-2|PGBD5	nc|ENSG00000177614|Q8N414-2|PGBD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2824096679688	2	561.28292	1120.55129	0.14394	8.0792E-05	-0.48257	-0.00027086	-0.33863	-0.00019007	561.2824359583267	15.76	0.35345	15.65	15.517	15.871	-0.10981					15	11	2	0	0	0	0.41168	1	1141	1141		1.3295	0.5359	1	28946			45085	7002	26046	26047	54774	54774					-0.004166503960504997
SSRAKHLK	8	Unmodified	_SSRAKHLK_					0	0	0			REV__nc|ENSG00000182329|Q0VF49|KIAA2012	REV__nc|ENSG00000182329|Q0VF49|KIAA2012	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7325134277344	2	463.780151	925.545748	-0.17707	-8.2119E-05	0.70567	0.00032727	0.5286	0.00024515	463.7803151201582	16.508	0.44674	16.393	16.191	16.638	-0.11434					21	15	2	0	0	0	0.34337	1	1338	1338		5.2307	0	1	27648	+		45086	18192	26047	26048	54775	54775					0.079997156028071
SSREKLKEI	9	Unmodified	_SSREKLKEI_					0	0	0			REV__ENSG00000100815|ENST00000267622|TRIP11	REV__ENSG00000100815|ENST00000267622|TRIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.3196411132812	2	545.316763	1088.61897	0.44591	0.00024316	-0.03167	-1.727E-05	0.41424	0.00022589	545.3167857690152	80.248	3.793	80.313	79.277	83.07	0.065102					607	160	5	0	0	0	0.26612	1	21040	21040		13.906	1.6654	1	16780000	+		45087	14232	26048	26049	54776	54776					0.07820799534761136
SSRGPLPVK	9	Unmodified	_SSRGPLPVK_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENSG00000213516|ENST00000652648|RBMXL1	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2200622558594	2	470.782359	939.550165	-0.011855	-5.5812E-06	-0.031389	-1.4777E-05	-0.043244	-2.0358E-05	470.78246211397834	19.124	0.78177	19.007	18.761	19.543	-0.11739					75	27	4	0	0	0	0.19686	1	2139	2139		24.991	0	1	533160			45088	4760	26049	26050	54777	54777					0.07797180025715988
SSRGYILQR	9	Unmodified	_SSRGYILQR_					0	0	0			REV__ENSG00000166016|ENST00000435224|ABTB2	REV__ENSG00000166016|ENST00000435224|ABTB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2855834960938	2	540.301447	1078.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.926	1	80.926	80.426	81.426	0								0	0	0	0.22666	1	21058	21058		13.906	3.8321	1		+		45089	17287	26050	26051	54778	54778					0.052190659403549944
SSRILRELHK	10	Unmodified	_SSRILRELHK_					0	0	0			REV__ENSG00000160294|ENST00000291688|MCM3AP	REV__ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8695068359375	2	619.870028	1237.7255	0.12236	7.5846E-05	-0.35072	-0.0002174	-0.22836	-0.00014155	619.8691099845951	93.934	1.0034	93.934	93.572	94.575	0					131	82	2	0	0	0	0.40262	1	25146	25146		2.9952	0	1	117470	+		45090	16893	26051	26052	54779	54779					0.11614974819917734
SSRILRELHK	10	Unmodified	_SSRILRELHK_					0	0	0			REV__ENSG00000160294|ENST00000291688|MCM3AP	REV__ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8685913085938	2	619.870028	1237.7255	0.29543	0.00018313	-0.1832	-0.00011356	0.11223	6.9568E-05	619.8690396100932	94.564	1.5426	94.562	93.798	95.341	-0.0020142					222	130	2	0	0	0	0.40262	1	25144	25144		2.9952	0	1	200390	+		45091	16893	26051	26052	54780	54780					0.11614974819917734
SSRKRLVE	8	Unmodified	_SSRKRLVE_					0	0	0			REV__ENSG00000156234|ENST00000682537|CXCL13	REV__ENSG00000156234|ENST00000682537|CXCL13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.79107666015625	2	487.790715	973.566878	0.35475	0.00017304	0.41003	0.00020001	0.76478	0.00037305	487.79074011191256	71.976	1.8152	71.976	71.375	73.191	0					145	65	4	0	0	0	0.45544	2	18544	18544;18591		3.9444	3.9444	1	999710	+		45092	16738	26052	26053	54781;54782	54781					0.0790368091164737
SSRKSKSSNL	10	Unmodified	_SSRKSKSSNL_					0	0	0		CON__Q2YDI2	CON__Q2YDI2	CON__Q2YDI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.275146484375	2	547.301644	1092.58874	0.25861	0.00014154	3.3813	0.0018506	3.6399	0.0019921	547.3032892824875	29.969	0.32211	29.983	29.773	30.095	0.013474					16	10	2	0	0	0	0.32088	1	5402	5402		2.7352	0	1	56297		+	45093	229	26053	26054	54783	54783					0.046144408695681705
SSRKTRRWD	9	Unmodified	_SSRKTRRWD_					0	0	0			REV__nc|ENSG00000149231|Q8N4S0-2|CCDC82	REV__nc|ENSG00000149231|Q8N4S0-2|CCDC82	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.8072509765625	2	596.320703	1190.62685	0.24088	0.00014364	-1.4185	-0.00084587	-1.1776	-0.00070223	596.3199029890849	15.691	0.46055	15.691	15.382	15.842	0					21	15	2	0	0	0	0.26168	1	1037	1037		1.8442	0	1	27531	+		45094	16454	26054	26055	54784	54784					0.0391637157488276
SSRKTRRWD	9	Unmodified	_SSRKTRRWD_					0	0	0			REV__nc|ENSG00000149231|Q8N4S0-2|CCDC82	REV__nc|ENSG00000149231|Q8N4S0-2|CCDC82	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	596.320703	1190.62685	0.28193	0.00016812	-1.1557	-0.00068919	-0.87381	-0.00052107	596.3199597756326	15.826	0.32526	15.716	15.517	15.842	-0.10981	0.012334	0.00014904	NaN	1.8442	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28020	+		45095	16454	26054	26055							0.0391637157488276
SSRLVIIMKM	10	Unmodified	_SSRLVIIMKM_					0	0	0			REV__ENST00000438193.1_2_19:54872771-54881940:-|nuORF	REV__ENST00000438193.1_2_19:54872771-54881940:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3426513671875	2	589.343412	1176.67227	0.33526	0.00019758	-1.0393	-0.00061253	-0.70408	-0.00041494	589.3426727570455	92.28	1.1715	92.369	91.704	92.875	0.089203					113	76	2	0	0	0	0.40262	1	24449	24449		2.9952	2.9952	1	265860	+		45096	21023	26055	26056	54785	54785					0.09100137721407009
SSRPGLAR	8	Unmodified	_SSRPGLAR_					0	0	0			REV__ENST00000537318.5_1_11:61547758-61548478:+|nuORF	REV__ENST00000537318.5_1_11:61547758-61548478:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.70916748046875	2	422.243401	842.472249	-0.38118	-0.00016095	0.283	0.00011949	-0.098179	-4.1456E-05	422.24336952918344	13.296	0.45017	13.296	13.147	13.597	0					35	15	3	0	0	0	0.34337	1	457	457		5.2307	0	1	181010	+		45097	19652	26056	26057	54786	54786					0.044711671603295144
SSRPGSLLTCL	11	Unmodified	_SSRPGSLLTCL_					0	0	0		ENST00000308497.8_1_4:184827565-184827868:+|nuORF	ENST00000308497.8_1_4:184827565-184827868:+|nuORF	ENST00000308497.8_1_4:184827565-184827868:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2796630859375	2	567.302798	1132.59104	0.022593	1.2817E-05	0.16457	9.3361E-05	0.18716	0.00010618	567.3028239380001	65.259	0.6653	65.248	64.947	65.612	-0.011337					49	24	3	0	0	0	0.28192	1	16279	16279		32.037	5.1538	1	306360			45098	9292	26057	26058	54787	54787					0.030051532830157157
SSRPLRALRVG	11	Unmodified	_SSRPLRALRVG_					0	0	0			REV__ENSG00000047056|ENST00000263150|WDR37	REV__ENSG00000047056|ENST00000263150|WDR37	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3701782226562	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.04	1	114.06	113.56	114.56	0.016708								0	0	0	0.3823	1	29664	29664		0	0	1		+		45099	13538	26058	26059	54788	54788					0.1289039453974965
SSRPLRALRVG	11	Unmodified	_SSRPLRALRVG_					0	0	0			REV__ENSG00000047056|ENST00000263150|WDR37	REV__ENSG00000047056|ENST00000263150|WDR37	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.35009765625	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.55	1	119.58	119.08	120.08	0.027756								0	0	0	0.3823	1	30915	30915		0	0	1		+		45100	13538	26058	26059	54789	54789					0.1289039453974965
SSRQKLSPV	9	Unmodified	_SSRQKLSPV_					0	0	0			REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1	REV__nc|ENSG00000258366|Q9NZ71-9|RTEL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2908020019531	2	501.290548	1000.56654	0.52669	0.00026403	0.14869	7.4535E-05	0.67538	0.00033856	501.29054346495025	76.365	3.7346	76.334	75.286	79.021	-0.031479					432	140	4	0	0	0	0.23767	7	19760	19675;19717;19760;19805;19852;19904;20087		18.146	8.0724	1	8319600	+		45101	19267	26059	26060	54790;54791;54792;54793;54794;54795;54796	54792					0.06628261191804086
SSRRQLAL	8	Unmodified	_SSRRQLAL_					0	0	0			REV__ENSG00000177096|ENST00000321753|PHETA2	REV__ENSG00000177096|ENST00000321753|PHETA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.777587890625	2	465.777608	929.540663	0.29394	0.00013691	-0.13788	-6.4221E-05	0.15606	7.2688E-05	465.7774408601235	71.615	3.3981	71.588	70.637	74.035	-0.027275					249	122	4	0	0	0	0.44389	1	18092	18092		7.9102	0	1	3172700	+		45102	17971	26060	26061	54797	54797					0.07307411740168845
SSRRRRPRAP	10	Unmodified	_SSRRRRPRAP_					0	0	0			REV__ENST00000402690.6_3_18:45423134-45457349:-|nuORF	REV__ENST00000402690.6_3_18:45423134-45457349:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8692626953125	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.425	1	94.508	94.008	95.008	0.082779								0	0	0	0.37157	1	25186	25186		5.7319	0	1		+		45103	20718	26061	26062	54798	54798					0.11346564205632603
SSSAASAAPLR	11	Unmodified	_SSSAASAAPLR_					0	0	0			REV__chr7:45914945-45920738|111|42.44|0.23|7.53|-|1|IGFBP3,IGFBP3|1	REV__chr7:45914945-45920738|111|42.44|0.23|7.53|-|1|IGFBP3,IGFBP3|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.2483215332031	2	509.269813	1016.52507	0.21415	0.00010906	0.45575	0.0002321	0.66991	0.00034116	509.7719293398482	31.213	0.2688	31.254	31.15	31.419	0.040989					11	9	2	0	0	0	0.32293	1	5837	5837		18.146	2.2992	1	44380	+		45104	13219	26062	26063	54799	54799					0.017470804324602796
SSSAASAAPLR	11	Unmodified	_SSSAASAAPLR_					0	0	0			REV__chr7:45914945-45920738|111|42.44|0.23|7.53|-|1|IGFBP3,IGFBP3|1	REV__chr7:45914945-45920738|111|42.44|0.23|7.53|-|1|IGFBP3,IGFBP3|1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	509.269813	1016.52507	-0.034159	-1.7396E-05	0.76637	0.00039029	0.73221	0.00037289	509.270156637979	31.306	0.076283	31.348	31.296	31.372	0.042366	0.047078	0.0001718	NaN	18.146	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37724	+		45105	13219	26062	26063							0.017470804324602796
SSSALLQLLK	10	Unmodified	_SSSALLQLLK_					0	0	0		ENST00000344691.8_1_21:36260099-36260198:-|nuORF	ENST00000344691.8_1_21:36260099-36260198:-|nuORF	ENST00000344691.8_1_21:36260099-36260198:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.279052734375	2	530.324057	1058.63356	0.54032	0.00028655	-0.18805	-9.9726E-05	0.35228	0.00018682	530.3238915077973	62.367	0.88095	62.358	61.979	62.86	-0.0085526					71	32	3	0	0	0	0.2005	1	15466	15466		51.415	33.269	1	1527100			45106	9556	26063	26064	54800	54800					0.10658871682880999
SSSALLQLLK	10	Unmodified	_SSSALLQLLK_					0	0	0		ENST00000344691.8_1_21:36260099-36260198:-|nuORF	ENST00000344691.8_1_21:36260099-36260198:-|nuORF	ENST00000344691.8_1_21:36260099-36260198:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	530.324057	1058.63356	0.56299	0.00029857	-0.1998	-0.00010596	0.36319	0.00019261	530.323918540063	62.395	0.86036	62.395	61.996	62.856	0	0.0095927	-3.7471E-05	NaN	51.415	72	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1356600			45107	9556	26063	26064							0.10658871682880999
SSSALLQLLK	10	Unmodified	_SSSALLQLLK_					0	0	0		ENST00000344691.8_1_21:36260099-36260198:-|nuORF	ENST00000344691.8_1_21:36260099-36260198:-|nuORF	ENST00000344691.8_1_21:36260099-36260198:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	530.324057	1058.63356	0.41223	0.00021862	-0.096726	-5.1296E-05	0.3155	0.00016732	530.323935022936	62.306	0.92847	62.403	61.978	62.906	0.096985	0.017496	7.1855E-05	NaN	51.415	75	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1649900			45108	9556	26063	26064							0.10658871682880999
SSSCSLWGTSF	11	Unmodified	_SSSCSLWGTSF_					0	0	0		nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.2466430664062	2	581.247689	1160.48082	0.26945	0.00015662	-1.4577	-0.0008473	-1.1883	-0.00069068	581.2465863174614	92.65	0.46673	92.739	92.543	93.01	0.089195					59	35	2	0	0	0	0.36257	1	24683	24683		16.149	0.90062	1	309470			45109	12633	26064	26065	54801	54801					-0.0929969177602743
SSSFGTRKQ	9	Unmodified	_SSSFGTRKQ_					0	0	0			REV__ENSG00000154781|ENST00000383794|CCDC174	REV__ENSG00000154781|ENST00000383794|CCDC174	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2693176269531	2	499.256705	996.498858	0.046865	2.3397E-05	0.39253	0.00019597	0.43939	0.00021937	499.2568609050662	14.341	0.31491	14.236	14.023	14.338	-0.10466					17	10	2	0	0	0	0.18803	1	727	727		25.399	1.3787	1	126810	+		45110	16677	26065	26066	54802	54802					0.0004681126099512767
SSSFGTRKQ	9	Unmodified	_SSSFGTRKQ_					0	0	0			REV__ENSG00000154781|ENST00000383794|CCDC174	REV__ENSG00000154781|ENST00000383794|CCDC174	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	499.256705	996.498858	0.060369	3.014E-05	0.5862	0.00029267	0.64657	0.00032281	499.2570019856088	14.261	0.2802	14.261	14.055	14.335	0	-0.0031199	0.00013487	NaN	25.399	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158000	+		45111	16677	26065	26066							0.0004681126099512767
SSSFGTRKQ	9	Unmodified	_SSSFGTRKQ_					0	0	0			REV__ENSG00000154781|ENST00000383794|CCDC174	REV__ENSG00000154781|ENST00000383794|CCDC174	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	499.256705	996.498858	0.046865	2.3397E-05	0.39253	0.00019597	0.43939	0.00021937	499.2568609050662	14.341	0.31491	14.236	14.023	14.338	-0.10466	-0.027901	-5.8521E-05	NaN	25.399	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126810	+		45112	16677	26065	26066							0.0004681126099512767
SSSFGTRKQ	9	Unmodified	_SSSFGTRKQ_					0	0	0			REV__ENSG00000154781|ENST00000383794|CCDC174	REV__ENSG00000154781|ENST00000383794|CCDC174	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	499.256705	996.498858	0.008396	4.1917E-06	0.42706	0.00021321	0.43546	0.00021741	499.25689936009536	14.361	0.39642	14.295	13.977	14.373	-0.066068	0.031021	-2.4035E-05	NaN	25.399	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123330	+		45113	16677	26065	26066							0.0004681126099512767
SSSFLASALV	10	Unmodified	_SSSFLASALV_					0	0	0			REV__ENST00000528927.5_1_11:418373-431830:-|nuORF;REV__ENST00000532094.5_1_11:420655-431830:-|nuORF;REV__ENST00000526142.5_1_11:419653-429752:-|nuORF	REV__ENST00000532094.5_1_11:420655-431830:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.284423828125	2	491.266207	980.517862	0.44597	0.00021909	0.2396	0.00011771	0.68557	0.0003368	491.2662137299806	48.997	0.52356	48.997	48.798	49.321	0					24	18	2	0	0	0	0.19457	1	11268	11268		49.933	21.446	1	166610	+		45114	18355;22028;21960	26066	26067	54803	54803					0.02682347832035248
SSSFPYTTK	9	Unmodified	_SSSFPYTTK_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2482604980469	2	509.248015	1016.48148	0.15733	8.012E-05	0.47149	0.0002401	0.62882	0.00032022	509.2482330156057	31.573	0.694	31.573	31.231	31.925	0					72	24	4	0	0	0	0.003673	2	5926	5873;5926		96.936	39.214	1	1765200			45115	2838	26067	26068	54804;54805	54805					-0.026105290646796675
SSSFPYTTK	9	Unmodified	_SSSFPYTTK_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2483215332031	2	509.248015	1016.48148	0.14655	7.4631E-05	0.32669	0.00016636	0.47324	0.000241	509.2481767920823	31.525	1.0261	31.567	30.996	32.022	0.042366					84	36	5	0	0	0	0.0031966	1	5912	5912		100.71	38.136	1	1901000			45116	2838	26067	26068	54806	54806					-0.026105290646796675
SSSFPYTTK	9	Unmodified	_SSSFPYTTK_					0	0	0		ENSG00000118689|ENST00000406360|FOXO3;nc|ENSG00000118689|O43524-2|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	ENSG00000118689|ENST00000406360|FOXO3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.248291015625	2	509.248015	1016.48148	0.24824	0.00012642	0.46765	0.00023815	0.71589	0.00036457	509.24822258996056	31.488	0.81985	31.529	31.07	31.89	0.040991					66	29	3	0	0	0	0.0040516	1	5886	5886		93.938	40.105	1	2060300			45117	2838	26067	26068	54807	54807					-0.026105290646796675
SSSGLHPPK	9	Unmodified	_SSSGLHPPK_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.2491760253906	2	455.243067	908.47158	-0.16482	-7.5032E-05	-0.51262	-0.00023337	-0.67744	-0.0003084	455.24278429554647	14.866	0.4503	14.866	14.561	15.012	0					35	15	3	0	0	0	0.20626	1	879	879		22.736	3.4793	1	112550			45118	6668	26068	26069	54808	54808					0.013683277206041566
SSSGLHPPK	9	Unmodified	_SSSGLHPPK_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2427062988281	2	455.243067	908.47158	-0.071619	-3.2604E-05	-0.50611	-0.0002304	-0.57773	-0.00026301	455.2427669960399	14.94	0.3679	14.83	14.587	14.955	-0.10982					30	12	3	0	0	0	0.20626	1	868	868		22.736	14.143	1	130110			45119	6668	26068	26069	54809	54809					0.013683277206041566
SSSGLHPPK	9	Unmodified	_SSSGLHPPK_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.24322509765625	2	455.243067	908.47158	-0.15953	-7.2624E-05	-0.43191	-0.00019663	-0.59144	-0.00026925	455.2427924251048	14.996	0.45157	14.931	14.589	15.041	-0.064413					40	15	4	0	0	0	0.31763	1	842	842		6.2058	1.8765	1	126330			45120	6668	26068	26069	54810	54810					0.013683277206041566
SSSGTITDEDE	11	Unmodified	_SSSGTITDEDE_					0	0	0		ENSG00000165138|ENST00000353234|ANKS6;nc|ENSG00000165138|Q68DC2-4|ANKS6	ENSG00000165138|ENST00000353234|ANKS6	ENSG00000165138|ENST00000353234|ANKS6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3379516601562	2	570.73058	1139.44661	0.33736	0.00019254	-0.77882	-0.0004445	-0.44147	-0.00025196	570.7298734008791	30.198	0.41902	30.198	29.999	30.418	0					23	14	2	0	0	0	0.33324	1	5451	5451		1.1933	0	1	173650			45121	5929	26069	26070	54811	54811					-0.11753861453939862
SSSGTITDEDE	11	Unmodified	_SSSGTITDEDE_					0	0	0		ENSG00000165138|ENST00000353234|ANKS6;nc|ENSG00000165138|Q68DC2-4|ANKS6	ENSG00000165138|ENST00000353234|ANKS6	ENSG00000165138|ENST00000353234|ANKS6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	570.73058	1139.44661	0.4308	0.00024587	-0.93485	-0.00053355	-0.50405	-0.00028768	570.729958145501	30.219	0.47508	30.247	30.048	30.523	0.027946	0.015313	-0.00022217	NaN	1.1933	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169880			45122	5929	26069	26070							-0.11753861453939862
SSSGTITDEDE	11	Unmodified	_SSSGTITDEDE_					0	0	0		ENSG00000165138|ENST00000353234|ANKS6;nc|ENSG00000165138|Q68DC2-4|ANKS6	ENSG00000165138|ENST00000353234|ANKS6	ENSG00000165138|ENST00000353234|ANKS6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	570.73058	1139.44661	-0.063929	-3.6486E-05	-0.5452	-0.00031116	-0.60913	-0.00034765	570.730130615627	30.223	0.40313	30.25	30.019	30.422	0.027157	0.018441	0.0002226	NaN	1.1933	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190780			45123	5929	26069	26070							-0.11753861453939862
SSSKITIPK	9	Unmodified	_SSSKITIPK_					0	0	0		nc|ENSG00000144837|Q53H76-3|PLA1A;ENSG00000144837|ENST00000273371|PLA1A;nc|ENSG00000144837|Q53H76-4|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7504577636719	2	480.78985	959.565146	0.026591	1.2785E-05	-1.1734	-0.00056416	-1.1468	-0.00055137	480.78916398917266	22.84	0.78117	22.752	22.435	23.216	-0.087608					55	27	3	0	0	0	0.25779	1	3238	3238		6.2058	6.2058	1	283190			45124	12739	26070	26071	54812	54812					0.08374627103034982
SSSKITIPK	9	Unmodified	_SSSKITIPK_					0	0	0		nc|ENSG00000144837|Q53H76-3|PLA1A;ENSG00000144837|ENST00000273371|PLA1A;nc|ENSG00000144837|Q53H76-4|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7505187988281	2	480.78985	959.565146	0.13576	6.5272E-05	-1.1856	-0.00057004	-1.0499	-0.00050477	480.7891029081321	22.829	0.77818	22.784	22.471	23.249	-0.044865					57	27	3	0	0	0	0.24787	1	3234	3234		15.248	5.8654	1	291390			45125	12739	26070	26071	54813	54813					0.08374627103034982
SSSLFNTGFLK	11	Unmodified	_SSSLFNTGFLK_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.3187866210938	2	600.816596	1199.61864	0.39129	0.00023509	-0.12126	-7.2855E-05	0.27003	0.00016224	600.8161119640511	61.955	0.83109	61.955	61.461	62.292	0					57	30	3	0	0	0	1.5873E-08	1	15227	15227		135.87	104.61	1	804710			45126	2998	26071	26072	54814	54814					0.02681379814907814
SSSLFNTGFLK	11	Unmodified	_SSSLFNTGFLK_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.8171997070312	2	600.816596	1199.61864	0.096169	5.778E-05	0.29065	0.00017463	0.38682	0.00023241	600.8165954520555	61.836	0.61565	61.933	61.638	62.254	0.096985					53	21	3	0	0	0	2.3024E-05	1	15194	15194		112.04	77.639	1	893040			45127	2998	26071	26072	54815	54815					0.02681379814907814
SSSLFNTGFLK	11	Unmodified	_SSSLFNTGFLK_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8171997070312	2	600.816596	1199.61864	0.1181	7.0959E-05	0.4617	0.0002774	0.5798	0.00034836	600.8168720767202	61.925	0.58423	61.917	61.582	62.167	-0.0085564					55	20	4	0	0	0	7.8723E-09	1	15217	15217		146.48	100.78	1	842560			45128	2998	26071	26072	54816	54816					0.02681379814907814
SSSLIKTSDK	10	Unmodified	_SSSLIKTSDK_					0	0	0		ENSG00000157741|ENST00000473989|UBN2	ENSG00000157741|ENST00000473989|UBN2	ENSG00000157741|ENST00000473989|UBN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3483276367188	2	533.292953	1064.57135	0.94743	0.00050526	-2.0756	-0.0011069	-1.1282	-0.00060164	533.2919542412828	46.992	1.0997	47.047	46.709	47.808	0.054375					56	39	2	0	0	0	0.27337	1	10807	10807		29.082	12.932	1	396490			45129	5323	26072	26073	54817	54817					0.041651005438779976
SSSLPHLKK	9	Unmodified	_SSSLPHLKK_					0	0	0		nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D;ENST00000496402.2_1_2:233990465-233995359:+|nuORF	nc|ENSG00000168918|Q92835-2|INPP5D	nc|ENSG00000168918|Q92835-2|INPP5D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7811279296875	2	498.795466	995.57638	0.32779	0.0001635	-1.0043	-0.00050095	-0.67653	-0.00033745	498.7948648640491	26.719	0.59388	26.68	26.519	27.113	-0.038671					47	20	3	0	0	0	0.29638	1	4554	4554		9.3831	2.0939	1	780310			45130	6313	26073	26074	54818	54818					0.07841449197189831
SSSLSLLLL	9	Unmodified	_SSSLSLLLL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENST00000547085.1_1_12:112600816-112607652:-|nuORF;ENST00000548140.1_1_12:112605060-112605680:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2757873535156	2	466.786776	931.558998	0.10586	4.9414E-05	0.85905	0.00040099	0.96491	0.00045041	466.7871409433273	38.233	0.57488	38.324	38.127	38.702	0.090881					28	20	2	0	0	0	0.24913	1	7903	7903		12.532	0	1	161140			45131	6689	26074	26075	54819	54819					0.09048108871547811
SSSLSLLLL	9	Unmodified	_SSSLSLLLL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENST00000547085.1_1_12:112600816-112607652:-|nuORF;ENST00000548140.1_1_12:112605060-112605680:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	466.786776	931.558998	-0.12924	-6.033E-05	1.0196	0.00047592	0.89033	0.0004156	466.78720276076626	38.338	0.55915	38.338	38.064	38.623	0	0.01139	4.066E-05	NaN	12.532	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255520			45132	6689	26074	26075							0.09048108871547811
SSSLSLLLL	9	Unmodified	_SSSLSLLLL_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENST00000547085.1_1_12:112600816-112607652:-|nuORF;ENST00000548140.1_1_12:112605060-112605680:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	466.786776	931.558998	0.18281	8.5333E-05	1.0681	0.00049856	1.2509	0.00058389	466.78714917667753	38.22	0.53137	38.318	38.064	38.596	0.097527	-0.0087401	8.592E-05	NaN	12.532	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221480			45133	6689	26074	26075							0.09048108871547811
SSSMEFKYDF	10	Unmodified	_SSSMEFKYDF_					0	0	0		ENSG00000084674|ENST00000233242|APOB;APOB|p.G3575Afs*48|1|0.18|ENSG00000084674|chr2:21006144-21006144|C/-|frameshift_variant	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.7633666992188	2	620.763171	1239.51179	0.44095	0.00027373	-0.27689	-0.00017189	0.16406	0.00010184	620.762912349011	56.467	0.76436	56.546	56.247	57.011	0.078674					71	28	3	0	0	0	0.29092	1	13540	13540		21.537	21.537	1	1919500			45134	1244	26075	26076	54820	54820					-0.09838538461781354
SSSPRKQL	8	Unmodified	_SSSPRKQL_					0	0	0		ENST00000585583.5_1_19:39088111-39100659:-|nuORF;ENSG00000104814|ENST00000396857|MAP4K1;nc|ENSG00000104814|Q92918|MAP4K1	ENST00000585583.5_1_19:39088111-39100659:-|nuORF	ENST00000585583.5_1_19:39088111-39100659:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7560729980469	2	451.756341	901.498129	-0.15742	-7.1117E-05	-0.29155	-0.00013171	-0.44897	-0.00020283	451.75619606091215	13.105	0.39311	13.105	13.003	13.396	0					25	13	3	0	0	0	0.34272	1	339	339		7.9102	1.187	1	132980			45135	1919	26076	26077	54821	54821					0.043440166119466994
SSSPRKQL	8	Unmodified	_SSSPRKQL_					0	0	0		ENST00000585583.5_1_19:39088111-39100659:-|nuORF;ENSG00000104814|ENST00000396857|MAP4K1;nc|ENSG00000104814|Q92918|MAP4K1	ENST00000585583.5_1_19:39088111-39100659:-|nuORF	ENST00000585583.5_1_19:39088111-39100659:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	451.756341	901.498129	-0.16195	-7.316E-05	-0.12892	-5.8241E-05	-0.29087	-0.0001314	451.75629418022925	13.178	0.20909	13.079	12.98	13.189	-0.099291	-0.0084398	5.0119E-05	NaN	7.9102	16	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133280			45136	1919	26076	26077							0.043440166119466994
SSSPRKQL	8	Unmodified	_SSSPRKQL_					0	0	0		ENST00000585583.5_1_19:39088111-39100659:-|nuORF;ENSG00000104814|ENST00000396857|MAP4K1;nc|ENSG00000104814|Q92918|MAP4K1	ENST00000585583.5_1_19:39088111-39100659:-|nuORF	ENST00000585583.5_1_19:39088111-39100659:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	451.756341	901.498129	-0.21234	-9.5924E-05	-0.29626	-0.00013384	-0.5086	-0.00022976	451.75621208542367	13.146	0.27917	13.079	12.936	13.215	-0.067495	-0.009012	-0.00010108	NaN	7.9102	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128470			45137	1919	26076	26077							0.043440166119466994
SSSPVNVKK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSSPVNVKK_					1	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2497863769531	2	494.277106	986.53966	0.43173	0.00021339	-0.98494	-0.00048683	-0.55321	-0.00027344	494.27647177841857	21.258	0.82373	21.205	20.947	21.771	-0.052912					69	28	4	0	0	0	0.059987	1	2806	2806		61.602	32.52	1	545290			45138	5063	26077	26078	54822	54822					0.04585152580614249
SSSPVNVKK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSSPVNVKK_					1	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	494.277106	986.53966	0.49058	0.00024248	-1.5242	-0.00075336	-1.0336	-0.00051088	494.2762665534811	21.204	0.79212	21.204	20.912	21.704	0	-0.0096633	-8.978E-05	NaN	61.602	70	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501590			45139	5063	26077	26078							0.04585152580614249
SSSPVNVKK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSSPVNVKK_					1	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	494.277106	986.53966	0.58347	0.0002884	-1.4978	-0.00074033	-0.91434	-0.00045194	494.2762499996151	21.339	0.72675	21.232	20.983	21.709	-0.10682	0.018475	-6.372E-05	NaN	61.602	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	600220			45140	5063	26077	26078							0.04585152580614249
SSSQPIGVTK	10	Unmodified	_SSSQPIGVTK_					0	0	0		ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2747497558594	2	502.274564	1002.53457	0.4754	0.00023878	-0.70794	-0.00035558	-0.23254	-0.0001168	502.2741326233067	20.905	0.97856	20.905	20.622	21.601	0					90	33	4	0	0	0	0.018653	1	2641	2641		73.196	40.411	1	714690			45141	8710	26078	26079	54823	54823					0.03340848718005418
SSSQPIGVTK	10	Unmodified	_SSSQPIGVTK_					0	0	0		ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.27459716796875	2	502.274564	1002.53457	0.59236	0.00029753	-0.73589	-0.00036962	-0.14353	-7.2093E-05	502.2741295481095	21.047	0.93234	20.937	20.666	21.599	-0.11003					83	32	4	0	0	0	0.0029358	3	2734	2688;2734;2779		103.69	52.275	1	787650			45142	8710	26078	26079	54824;54825;54826	54825					0.03340848718005418
SSSQPIGVTK	10	Unmodified	_SSSQPIGVTK_					0	0	0		ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	ENSG00000274070|ENST00000616305|CASTOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2746887207031	2	502.274564	1002.53457	0.48886	0.00024554	-0.75511	-0.00037927	-0.26625	-0.00013373	502.27414408647786	20.973	0.9329	20.92	20.667	21.6	-0.052912					84	32	5	0	0	0	0.0035922	3	2712	2661;2712;2758		99.864	48.449	1	728460			45143	8710	26078	26079	54827;54828;54829	54828					0.03340848718005418
SSSQVVVLI	9	Unmodified	_SSSQVVVLI_					0	0	0			REV__ENSG00000164944|ENST00000297591|VIRMA;REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	REV__ENSG00000164944|ENST00000297591|VIRMA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2757873535156	2	466.276575	930.538597	0.096621	4.5052E-05	-1.5447	-0.00072025	-1.4481	-0.0006752	466.2757295751649	38.045	0.39003	38.136	37.983	38.373	0.090885					29	13	3	0	0	0	0.12642	1	7903	7903		34.402	0	1	383870	+		45144	17193;23069	26079	26080	54830	54830					0.07054938211717854
SSSQVVVLI	9	Unmodified	_SSSQVVVLI_					0	0	0			REV__ENSG00000164944|ENST00000297591|VIRMA;REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	REV__ENSG00000164944|ENST00000297591|VIRMA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	466.276575	930.538597	-0.0020789	-9.6937E-07	-1.3232	-0.00061696	-1.3252	-0.00061793	466.2756263022421	38.102	0.36871	38.102	37.926	38.295	0	-0.016597	3.1406E-05	NaN	34.402	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343400	+		45145	17193;23069	26079	26080							0.07054938211717854
SSSQVVVLI	9	Unmodified	_SSSQVVVLI_					0	0	0			REV__ENSG00000164944|ENST00000297591|VIRMA;REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	REV__ENSG00000164944|ENST00000297591|VIRMA	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	466.276575	930.538597	0.096621	4.5052E-05	-1.5447	-0.00072025	-1.4481	-0.0006752	466.2757295751649	38.045	0.39003	38.136	37.983	38.373	0.090885	0.017077	-0.00017517	NaN	34.402	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383870	+		45146	17193;23069	26079	26080							0.07054938211717854
SSSQVVVLI	9	Unmodified	_SSSQVVVLI_					0	0	0			REV__ENSG00000164944|ENST00000297591|VIRMA;REV__nc|ENSG00000164944|Q69YN4-3|VIRMA	REV__ENSG00000164944|ENST00000297591|VIRMA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	466.276575	930.538597	0.14749	6.8773E-05	-1.2055	-0.0005621	-1.058	-0.00049333	466.2757077645665	38.021	0.39371	38.118	37.927	38.32	0.097527	-0.00048044	0.00014112	NaN	34.402	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293790	+		45147	17193;23069	26079	26080							0.07054938211717854
SSSRAVVVK	9	Unmodified	_SSSRAVVVK_					0	0	0		ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8	ENST00000546583.5_1_12:53291214-53294602:-|nuORF	ENST00000546583.5_1_12:53291214-53294602:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.77996826171875	2	466.779816	931.545079	-0.31333	-0.00014625	0.52161	0.00024348	0.20828	9.7222E-05	466.77997933354845	13.807	0.30205	13.807	13.66	13.962	0					31	10	4	0	0	0	0.023967	1	529	529		62.573	8.7399	1	638340		+	45148	204	26080	26081	54831	54831					0.07656876163093784
SSSRAVVVK	9	Unmodified	_SSSRAVVVK_					0	0	0		ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8	ENST00000546583.5_1_12:53291214-53294602:-|nuORF	ENST00000546583.5_1_12:53291214-53294602:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7797546386719	2	466.779816	931.545079	-0.15888	-7.4162E-05	-0.20229	-9.4423E-05	-0.36117	-0.00016859	466.77942077920915	13.887	0.53795	13.821	13.469	14.007	-0.066068					44	18	5	0	0	0	0.064268	1	550	550		47.594	3.1874	1	548090		+	45149	204	26080	26081	54832	54832					0.07656876163093784
SSSRAVVVKK	10	Unmodified	_SSSRAVVVKK_					0	0	0		ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8	ENST00000546583.5_1_12:53291214-53294602:-|nuORF	ENST00000546583.5_1_12:53291214-53294602:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3436279296875	2	530.827298	1059.64004	0.081195	4.31E-05	-0.21991	-0.00011673	-0.13872	-7.3634E-05	530.8271177455405	12.718	0.26479	12.618	12.521	12.785	-0.099291					16	8	3	0	0	0	0.40532	1	228	228		2.4985	0.19575	1	79502		+	45150	204	26081	26082	54833	54833					0.11260809634268298
SSSRGPLPVK	10	Unmodified	_SSSRGPLPVK_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENSG00000213516|ENST00000652648|RBMXL1	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2985229492188	2	514.298373	1026.58219	0.16277	8.3711E-05	-0.0058121	-2.9892E-06	0.15696	8.0722E-05	514.2981042619774	19.408	1.0036	19.292	18.977	19.981	-0.11592					81	34	4	0	0	0	0.24437	1	2250	2250		27.223	3.2027	1	338320			45151	4760	26082	26083	54834	54834					0.0699654770885445
SSSSPTFPK	9	Unmodified	_SSSSPTFPK_					0	0	0		ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	ENSG00000171456|ENST00000375687|ASXL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.2523498535156	2	469.234907	936.455261	-0.12605	-5.9148E-05	0.054391	2.5522E-05	-0.071662	-3.3627E-05	469.2352528612234	25.17	0.64809	25.114	24.972	25.62	-0.055931					34	22	2	0	0	0	0.25123	1	4056	4056		12.241	1.4167	1	60054			45152	6544	26083	26084	54835	54835					-0.015507982361441464
SSSSQTQPLK	10	Unmodified	_SSSSQTQPLK_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.7749633789062	2	531.774928	1061.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.739	1	14.739	14.239	15.239	0								0	0	0	0.35285	1	816	816		13.615	4.2317	1				45153	6706	26084	26085	54836	54836					0.006996433670337865
SSSSQTQPLK	10	Unmodified	_SSSSQTQPLK_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7752685546875	2	531.774928	1061.5353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.817	1	14.708	14.208	15.208	-0.10981								0	0	0	0.33391	1	842	842		21.59	10.766	1				45154	6706	26084	26085	54837	54837					0.006996433670337865
SSSSQTQPLK	10	Unmodified	_SSSSQTQPLK_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.774658203125	2	531.774928	1061.5353	0.16342	8.6903E-05	0.81854	0.00043528	0.98196	0.00052218	531.7751469241881	14.809	0.41909	14.744	14.564	14.984	-0.064413					39	14	4	0	0	0	0.25422	1	835	835		26.021	15.197	1	90797			45155	6706	26084	26085	54838	54838					0.006996433670337865
SSSSRFLEV	9	Unmodified	_SSSSRFLEV_					0	0	0		nc|ENSG00000157837|Q8TCT6-3|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF;ENST00000392495.7_1_12:121202804-121206971:-|nuORF;ENSG00000157837|ENST00000353487|SPPL3	nc|ENSG00000157837|Q8TCT6-3|SPPL3	nc|ENSG00000157837|Q8TCT6-3|SPPL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.25872802734375	2	506.258914	1010.50327	0.14588	7.3851E-05	-0.031345	-1.5869E-05	0.11453	5.7982E-05	506.2588725232812	42.078	1.0179	42.078	41.825	42.842	0					93	36	3	0	0	0	0.026579	3	9094	9094;9143;9196		61.602	27.2	1	3826700			45156	5329	26085	26086	54839;54840;54841	54839					-0.0015572431608461557
SSSSRFLEV	9	Unmodified	_SSSSRFLEV_					0	0	0		nc|ENSG00000157837|Q8TCT6-3|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF;ENST00000392495.7_1_12:121202804-121206971:-|nuORF;ENSG00000157837|ENST00000353487|SPPL3	nc|ENSG00000157837|Q8TCT6-3|SPPL3	nc|ENSG00000157837|Q8TCT6-3|SPPL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.25897216796875	2	506.258914	1010.50327	0.35723	0.00018085	-0.46888	-0.00023737	-0.11164	-5.652E-05	506.2587276634087	41.785	1.1634	41.875	41.676	42.839	0.090252					102	45	3	0	0	0	0.026579	3	9010	9010;9055;9107		61.602	27.2	1	5189000			45157	5329	26085	26086	54842;54843;54844	54842					-0.0015572431608461557
SSSSRFLEV	9	Unmodified	_SSSSRFLEV_					0	0	0		nc|ENSG00000157837|Q8TCT6-3|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF;ENST00000392495.7_1_12:121202804-121206971:-|nuORF;ENSG00000157837|ENST00000353487|SPPL3	nc|ENSG00000157837|Q8TCT6-3|SPPL3	nc|ENSG00000157837|Q8TCT6-3|SPPL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.25909423828125	2	506.258914	1010.50327	0.59775	0.00030262	-0.28285	-0.0001432	0.3149	0.00015942	506.25874545811513	41.691	1.0676	41.787	41.6	42.668	0.096626					94	40	3	0	0	0	0.026579	2	8987	8987;9044		61.602	27.2	1	5402500			45158	5329	26085	26086	54845;54846	54845					-0.0015572431608461557
SSSSRQPRSIL	11	Unmodified	_SSSSRQPRSIL_					0	0	0		CON__Q9Z2K1;CON__Q3ZAW8	CON__Q9Z2K1	CON__Q9Z2K1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.1747741699219	3	406.558076	1216.6524	-0.19045	-7.743E-05	0.10443	4.2458E-05	-0.086019	-3.4972E-05	406.5581068916587	26.452	0.73484	26.452	26.106	26.841	0					67	25	4	0	0	0	0.32987	1	4378	4378		10.527	0.76322	1	417890		+	45159	235	26086	26087	54847	54847					0.052738013066800704
SSSSRQPRSIL	11	Unmodified	_SSSSRQPRSIL_					0	0	0		CON__Q9Z2K1;CON__Q3ZAW8	CON__Q9Z2K1	CON__Q9Z2K1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	406.558076	1216.6524	0.11334	4.6078E-05	-0.30786	-0.00012516	-0.19453	-7.9087E-05	406.5579915901098	26.566	0.54259	26.544	26.298	26.841	-0.022236	0.045684	-0.00024404	NaN	10.527	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	474710		+	45160	235	26086	26087							0.052738013066800704
SSSSSSPFK	9	Unmodified	_SSSSSSPFK_					0	0	0		nc|ENSG00000105722|P50548-2|ERF;ENSG00000105722|ENST00000222329|ERF	nc|ENSG00000105722|P50548-2|ERF	nc|ENSG00000105722|P50548-2|ERF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7484130859375	2	457.216714	912.418876	0.059906	2.739E-05	0.10057	4.5983E-05	0.16048	7.3373E-05	457.21663647188325	17.457	0.68117	17.457	17.217	17.898	0					49	23	3	0	0	0	0.25612	1	1649	1649		8.1555	1.9497	1	109430			45161	2016	26087	26088	54848	54848					-0.0408367513284702
SSSSVLINK	9	Unmodified	_SSSSVLINK_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7637939453125	2	467.763832	933.513111	-0.12613	-5.8997E-05	0.7936	0.00037122	0.66747	0.00031222	467.7639482639782	23.688	0.85598	23.688	23.278	24.134	0					50	29	3	0	0	0	0.03069	1	3562	3562		60.074	25.672	1	268380			45162	2936	26088	26089	54849	54849					0.04369463689283748
SSSSVLINK	9	Unmodified	_SSSSVLINK_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.76373291015625	2	467.763832	933.513111	-0.0051611	-2.4142E-06	0.49777	0.00023284	0.49261	0.00023042	467.76380812114525	23.806	0.81159	23.733	23.368	24.179	-0.072559					59	27	3	0	0	0	0.0079761	2	3548	3548;3597		82.529	28.697	1	280930			45163	2936	26088	26089	54850;54851	54850					0.04369463689283748
SSSSVLINK	9	Unmodified	_SSSSVLINK_					0	0	0		ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	ENSG00000120278|ENST00000696526|PLEKHG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.76373291015625	2	467.763832	933.513111	0.28645	0.00013399	0.30318	0.00014182	0.58963	0.00027581	467.76373463062674	23.794	0.7756	23.755	23.391	24.166	-0.038927					57	26	3	0	0	0	0.13643	1	3600	3600		45.7	15.063	1	300880			45164	2936	26088	26089	54852	54852					0.04369463689283748
SSSTEFVEK	9	Unmodified	_SSSTEFVEK_					0	0	0		ENSG00000205302|ENST00000379516|SNX2;ENST00000511365.1_1_5:122139202-122144051:+|nuORF;nc|ENSG00000205302|O60749-2|SNX2	ENSG00000205302|ENST00000379516|SNX2	ENSG00000205302|ENST00000379516|SNX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2431335449219	2	507.242929	1012.47131	0.09644	4.8918E-05	0.40236	0.00020409	0.4988	0.00025301	507.24308232796335	22.727	0.63421	22.727	22.476	23.11	0					45	19	3	0	0	0	0.23612	1	3257	3257		18.373	8.2992	1	167880			45165	8281	26089	26090	54853	54853					-0.03443136789894652
SSSTVSYLK	9	Unmodified	_SSSTVSYLK_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.1033020019531	2	486.25584	970.497126	0.079933	3.8868E-05	-0.43297	-0.00021053	-0.35303	-0.00017166	486.25535056177137	27.36	0.69447	27.36	27.146	27.84	0					53	23	3	0	0	0	0.19686	1	4636	4636		19.362	9.288	1	344300			45166	5917	26090	26091	54854	54854					0.010697574523760522
SSSTVSYLK	9	Unmodified	_SSSTVSYLK_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.25518798828125	2	486.25584	970.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.398	1	27.376	26.876	27.876	-0.021412								0	0	0	0.171	1	4647	4647		29.841	12.898	1				45167	5917	26090	26091	54855	54855					0.010697574523760522
SSSTVSYLK	9	Unmodified	_SSSTVSYLK_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2556457519531	2	486.25584	970.497126	0.10435	5.074E-05	-0.60072	-0.0002921	-0.49637	-0.00024136	486.25531772709127	27.369	0.71349	27.358	27.014	27.727	-0.011562					46	24	3	0	0	0	0.19083	1	4630	4630		24.991	5.629	1	339330			45168	5917	26090	26091	54856	54856					0.010697574523760522
SSSVHSRTFN	10	Unmodified	_SSSVHSRTFN_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2886962890625	2	561.270344	1120.52613	0.26649	0.00014957	-0.072388	-4.0629E-05	0.1941	0.00010894	561.2701854682995	17.11	0.37125	17.11	16.925	17.296	0					18	12	2	0	0	0	0.38284	1	1576	1576		6.6304	1.7334	1	38509			45169	12607	26091	26092	54857	54857					-0.029307051986279475
SSSVHSRTFN	10	Unmodified	_SSSVHSRTFN_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2885131835938	2	561.270344	1120.52613	0.15584	8.7471E-05	0.42575	0.00023896	0.5816	0.00032643	561.2706447927292	17.391	0.30254	17.273	17.053	17.355	-0.11739					14	10	2	0	0	0	0.39782	1	1641	1641		3.8763	0.27984	1	40587			45170	12607	26091	26092	54858	54858					-0.029307051986279475
SSSVHSRTFN	10	Unmodified	_SSSVHSRTFN_					0	0	0		nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-12|SORBS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2885131835938	2	561.270344	1120.52613	0.32973	0.00018507	0.30192	0.00016946	0.63165	0.00035453	561.2703837646612	17.169	0.52699	17.109	16.917	17.444	-0.060429					22	18	2	0	0	0	0.37751	1	1553	1553		7.609	1.8771	1	36428			45171	12607	26091	26092	54859	54859					-0.029307051986279475
SSTELLRQLA	10	Unmodified	_SSTELLRQLA_					0	0	0		ENST00000475773.5_1_1:29520676-29529710:-|nuORF;ENST00000464511.1_1_1:29527026-29529677:-|nuORF;nc|ENSG00000116353|Q9BV79-2|MECR;ENSG00000116353|ENST00000263702|MECR	ENST00000475773.5_1_1:29520676-29529710:-|nuORF	ENST00000475773.5_1_1:29520676-29529710:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.7896728515625	2	559.31422	1116.61389	0.14608	8.1706E-05	0.83353	0.0004662	0.97961	0.00054791	559.3146530644793	17.633	0.43524	17.516	17.259	17.694	-0.11739					23	14	2	0	0	0	0.32033	1	1648	1648		1.4819	0	1	61849			45172	10940	26092	26093	54860	54860					0.060244956721589915
SSTHTGPR	8	Unmodified	_SSTHTGPR_					0	0	0			REV__GAMT|p.E141Rfs*20|1|0.1|ENSG00000130005|chr19:1399166-1399166|C/-|frameshift_variant	REV__GAMT|p.E141Rfs*20|1|0.1|ENSG00000130005|chr19:1399166-1399166|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.70916748046875	2	421.709391	841.404229	-0.37617	-0.00015863	0.13119	5.5324E-05	-0.24498	-0.00010331	421.709352028199	13.514	0.34867	13.514	13.365	13.714	0					24	11	3	0	0	0	0.4419	1	457	457		8.5933	0	1	126730	+		45173	22690	26093	26094	54861	54861					-0.02281702490324733
SSTHTGPR	8	Unmodified	_SSTHTGPR_					0	0	0			REV__GAMT|p.E141Rfs*20|1|0.1|ENSG00000130005|chr19:1399166-1399166|C/-|frameshift_variant	REV__GAMT|p.E141Rfs*20|1|0.1|ENSG00000130005|chr19:1399166-1399166|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.7092590332031	2	421.709391	841.404229	-0.36006	-0.00015184	0.057901	2.4417E-05	-0.30216	-0.00012742	421.7093573355254	13.603	0.54429	13.504	13.306	13.85	-0.099291					36	19	3	0	0	0	0.39068	1	482	482		20.454	0	1	118060	+		45174	22690	26093	26094	54862	54862					-0.02281702490324733
SSTHTGPR	8	Unmodified	_SSTHTGPR_					0	0	0			REV__GAMT|p.E141Rfs*20|1|0.1|ENSG00000130005|chr19:1399166-1399166|C/-|frameshift_variant	REV__GAMT|p.E141Rfs*20|1|0.1|ENSG00000130005|chr19:1399166-1399166|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.75811767578125	2	421.709391	841.404229	-0.36006	-0.00015184	0.057901	2.4417E-05	-0.30216	-0.00012742	421.7093573355254	13.603	0.54429	13.504	13.306	13.85	-0.099291					36	19	3	0	0	0	0.33993	1	494	494		16.942	0	1	118060	+		45175	22690	26093	26094	54863	54863					-0.02281702490324733
SSTHTGPR	8	Unmodified	_SSTHTGPR_					0	0	0			REV__GAMT|p.E141Rfs*20|1|0.1|ENSG00000130005|chr19:1399166-1399166|C/-|frameshift_variant	REV__GAMT|p.E141Rfs*20|1|0.1|ENSG00000130005|chr19:1399166-1399166|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7092590332031	2	421.709391	841.404229	-0.33178	-0.00013992	0.12099	5.1022E-05	-0.21079	-8.8894E-05	421.709369601621	13.605	0.32998	13.537	13.416	13.746	-0.067496					23	11	3	0	0	0	0.43043	1	493	493		12.532	0	1	124330	+		45176	22690	26093	26094	54864	54864					-0.02281702490324733
SSTHTGPR	8	Unmodified	_SSTHTGPR_					0	0	0			REV__GAMT|p.E141Rfs*20|1|0.1|ENSG00000130005|chr19:1399166-1399166|C/-|frameshift_variant	REV__GAMT|p.E141Rfs*20|1|0.1|ENSG00000130005|chr19:1399166-1399166|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.75811767578125	2	421.709391	841.404229	-0.33178	-0.00013992	0.12099	5.1022E-05	-0.21079	-8.8894E-05	421.709369601621	13.605	0.32998	13.537	13.416	13.746	-0.067496					23	11	3	0	0	0	0.34247	1	503	503		8.5933	0	1	124330	+		45177	22690	26093	26094	54865	54865					-0.02281702490324733
SSTLVHIFL	9	Unmodified	_SSTLVHIFL_					0	0	0			REV__ENST00000536859.5_1_1:31883117-31883183:+|nuORF	REV__ENST00000536859.5_1_1:31883117-31883183:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7764892578125	2	508.792392	1015.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.042	1	55.042	54.542	55.542	0								0	0	0	0.23367	1	13115	13115		11.64	1.5664	1		+		45178	22085	26094	26095	54866	54866					0.06306930965638458
SSTQFEVKK	9	Unmodified	_SSTQFEVKK_					0	0	0		CON__P01030;CON__ENSEMBL:ENSBTAP00000007350;ENST00000467948.1_1_6:31950925-31952132:+|nuORF;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2828369140625	2	527.282389	1052.55022	0.46308	0.00024417	0.66544	0.00035087	1.1285	0.00059505	527.282536526437	17.531	0.50603	17.531	17.296	17.802	0					22	17	2	0	0	0	0.30459	1	1673	1673		8.1555	4.2111	1	51013		+	45179	8441;207	26095	26096	54867	54867					0.026051352350577872
SSTQFEVKK	9	Unmodified	_SSTQFEVKK_					0	0	0		CON__P01030;CON__ENSEMBL:ENSBTAP00000007350;ENST00000467948.1_1_6:31950925-31952132:+|nuORF;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2825317382812	2	527.282389	1052.55022	0.24833	0.00013094	0.49993	0.0002636	0.74826	0.00039455	527.2823582098891	17.691	0.42552	17.573	17.386	17.812	-0.11739					19	14	2	0	0	0	0.30064	1	1700	1700		8.7454	4.801	1	57888		+	45180	8441;207	26095	26096	54868	54868					0.026051352350577872
SSTQFEVKK	9	Unmodified	_SSTQFEVKK_					0	0	0		CON__P01030;CON__ENSEMBL:ENSBTAP00000007350;ENST00000467948.1_1_6:31950925-31952132:+|nuORF;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2828369140625	2	527.282389	1052.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.634	1	17.573	17.073	18.073	-0.060429								0	0	0	0.23182	1	1688	1688		12.241	4.9514	1			+	45181	8441;207	26095	26096	54869	54869					0.026051352350577872
SSTSHVPEV	9	Unmodified	_SSTSHVPEV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.7299499511719	2	471.729989	941.445425	-0.010302	-4.8597E-06	0.16027	7.5604E-05	0.14997	7.0744E-05	471.7300126896044	26.66	1.0825	26.66	25.981	27.063	0					77	37	3	0	0	0	0.019245	1	4433	4433		65.235	34.598	1	221720			45182	6378	26096	26097	54870	54870					-0.027639862415185235
SSTSHVPEV	9	Unmodified	_SSTSHVPEV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7298278808594	2	471.729989	941.445425	0.10165	4.7949E-05	0.1332	6.2836E-05	0.23485	0.00011078	471.73000577385864	26.687	1.1524	26.648	25.931	27.083	-0.038671					78	40	3	0	0	0	0.07432	1	4444	4444		43.858	24.601	1	248080			45183	6378	26096	26097	54871	54871					-0.027639862415185235
SSTSHVPEV	9	Unmodified	_SSTSHVPEV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.73004150390625	2	471.729989	941.445425	0.37127	0.00017514	-0.15758	-7.4338E-05	0.21369	0.0001008	471.7298102389631	26.705	1.0864	26.683	25.945	27.031	-0.022238					70	38	3	0	0	0	0.012929	1	4438	4438		74.929	46.442	1	274150			45184	6378	26096	26097	54872	54872					-0.027639862415185235
SSVAHTGKNL	10	Unmodified	_SSVAHTGKNL_					0	0	0		ENST00000463727.1_1_10:129867395-129867503:+|nuORF	ENST00000463727.1_1_10:129867395-129867503:+|nuORF	ENST00000463727.1_1_10:129867395-129867503:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.27276611328125	2	507.272355	1012.53016	0.088895	4.5094E-05	-0.027509	-1.3954E-05	0.061386	3.114E-05	507.2722391210185	23.08	1.0469	23.08	22.622	23.669	0					70	36	3	0	0	0	0.26265	1	3286	3286		24.991	0.97039	1	413090			45185	10769	26097	26098	54873	54873					0.024393842950985345
SSVDIFFFDK	10	Unmodified	_SSVDIFFFDK_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3007202148438	2	602.797872	1203.58119	0.56119	0.00033829	-0.91909	-0.00055402	-0.35789	-0.00021574	602.7973992515601	79.69	0.15534	79.751	79.618	79.774	0.061417					7	5	2	0	0	0	0.37454	1	20644	20644		8.1555	0.8663	1	64030	+		45186	15490	26098	26099	54874	54874					-0.012457114507014921
SSVDIFFFDK	10	Unmodified	_SSVDIFFFDK_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8004150390625	2	602.797872	1203.58119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.374	1	83.357	82.857	83.857	-0.01725								0	0	0	0.3726	1	21794	21794		5.2969	1.3525	1		+		45187	15490	26098	26099	54875	54875					-0.012457114507014921
SSVFYAMKQ	9	Unmodified	_SSVFYAMKQ_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.293701171875	2	530.760235	1059.50592	0.4249	0.00022552	0.143	7.5898E-05	0.5679	0.00030142	530.7603572221177	26.825	0.16632	26.825	26.759	26.925	0					7	5	2	0	0	0	0.26168	1	4462	4462		1.8442	0	1	38822	+		45188	18977	26099	26100	54876	54876					-0.02145592182796463
SSVGSVITK	9	Unmodified	_SSVGSVITK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;nc|ENSG00000076554|P55327-5|TPD52	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.25299072265625	2	439.2531	876.491647	0.020274	8.9052E-06	0.11629	5.1083E-05	0.13657	5.9988E-05	439.253059052059	25.086	0.62842	25.086	24.817	25.445	0					64	21	4	0	0	0	0.0028032	1	3980	3980		103.82	53.891	1	983640			45189	12589	26100	26101	54877	54877					0.048460786605687645
SSVGSVITK	9	Unmodified	_SSVGSVITK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;nc|ENSG00000076554|P55327-5|TPD52	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.253173828125	2	439.2531	876.491647	-0.099938	-4.3898E-05	0.28512	0.00012524	0.18518	8.134E-05	439.25312639310056	25.133	0.58711	25.077	24.837	25.425	-0.055931					62	20	4	0	0	0	0.0011116	1	4001	4001		121.35	62.667	1	1091400			45190	12589	26100	26101	54878	54878					0.048460786605687645
SSVGSVITK	9	Unmodified	_SSVGSVITK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;nc|ENSG00000076554|P55327-5|TPD52	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.2530212402344	2	439.2531	876.491647	-0.3173	-0.00013938	0.55479	0.00024369	0.23749	0.00010432	439.25324968441214	25.114	0.63806	25.083	24.796	25.434	-0.031408					73	21	6	0	0	0	0.0013924	1	3987	3987		117.76	69.415	1	1096500			45191	12589	26100	26101	54879	54879					0.048460786605687645
SSVGSVITKK	10	Unmodified	_SSVGSVITKK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;nc|ENSG00000076554|P55327-5|TPD52	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.301025390625	2	503.300581	1004.58661	0.13687	6.8885E-05	0.36302	0.00018271	0.49989	0.00025159	503.30068923768783	18.87	0.61689	18.87	18.677	19.294	0					46	21	3	0	0	0	0.15804	1	2046	2046		37.771	11.503	1	307580			45192	12589	26101	26102	54880	54880					0.08450012131754647
SSVGSVITKK	10	Unmodified	_SSVGSVITKK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;nc|ENSG00000076554|P55327-5|TPD52	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.3011779785156	2	503.300581	1004.58661	0.14444	7.2698E-05	0.49662	0.00024995	0.64106	0.00032264	503.3008042535691	18.99	0.78176	18.873	18.678	19.46	-0.11739					53	27	3	0	0	0	0.08437	1	2082	2082		51.488	26.497	1	317050			45193	12589	26101	26102	54881	54881					0.08450012131754647
SSVGSVITKK	10	Unmodified	_SSVGSVITKK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;nc|ENSG00000076554|P55327-5|TPD52	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.3013000488281	2	503.300581	1004.58661	0.083977	4.2266E-05	0.42066	0.00021172	0.50464	0.00025398	503.3007165957476	18.929	0.59966	18.871	18.707	19.307	-0.058174					46	20	3	0	0	0	0.14624	1	2074	2074		39.213	22.1	1	316540			45194	12589	26101	26102	54882	54882					0.08450012131754647
SSVILFLNK	9	Unmodified	_SSVILFLNK_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENSG00000156052|ENST00000286548|GNAQ;ENSG00000156049|ENST00000341700|GNA14	ENSG00000088256|ENST00000078429|GNA11;ENSG00000156049|ENST00000341700|GNA14	ENSG00000088256|ENST00000078429|GNA11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2620849609375	2	510.808042	1019.60153	0.31069	0.0001587	0.55607	0.00028404	0.86676	0.00044275	510.8084024330285	57.988	0.38894	57.988	57.854	58.243	0					22	13	2	0	0	0	0.075169	1	14071	14071		53.833	28.433	1	249650			45195	1319;5216	26102	26103	54883	54883					0.09251503999746546
SSVILFLNK	9	Unmodified	_SSVILFLNK_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENSG00000156052|ENST00000286548|GNAQ;ENSG00000156049|ENST00000341700|GNA14	ENSG00000088256|ENST00000078429|GNA11;ENSG00000156049|ENST00000341700|GNA14	ENSG00000088256|ENST00000078429|GNA11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2619934082031	2	510.808042	1019.60153	0.29715	0.00015179	0.43975	0.00022463	0.7369	0.00037641	510.8084240854244	57.826	0.53969	57.912	57.598	58.138	0.085617					27	19	2	0	0	0	0.11397	1	13986	13986		41.84	16.44	1	223600			45196	1319;5216	26102	26103	54884	54884					0.09251503999746546
SSVILFLNK	9	Unmodified	_SSVILFLNK_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;ENSG00000156052|ENST00000286548|GNAQ;ENSG00000156049|ENST00000341700|GNA14	ENSG00000088256|ENST00000078429|GNA11;ENSG00000156049|ENST00000341700|GNA14	ENSG00000088256|ENST00000078429|GNA11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2623291015625	2	510.808042	1019.60153	0.36896	0.00018847	0.58144	0.000297	0.9504	0.00048547	510.80839120321764	58.057	0.37065	58.04	57.821	58.192	-0.0172					24	13	2	0	0	0	0.09064	1	14078	14078		47.749	22.349	1	234730			45197	1319;5216	26102	26103	54885	54885					0.09251503999746546
SSVKAVILK	9	Unmodified	_SSVKAVILK_					0	0	0		ENSG00000105928|ENST00000645220|GSDME;nc|ENSG00000105928|O60443-2|GSDME;nc|ENSG00000105928|O60443-3|GSDME	ENSG00000105928|ENST00000645220|GSDME	ENSG00000105928|ENST00000645220|GSDME	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.2272033691406	2	472.810585	943.606617	0.18281	8.6434E-05	-0.15132	-7.1545E-05	0.031491	1.4889E-05	472.8103428260717	26.072	0.46097	26.049	25.867	26.328	-0.022238					26	16	3	0	0	0	0.24636	1	4250	4250		16.149	16.149	1	83076			45198	2036	26103	26104	54886	54886					0.13255807862378788
SSVPLFAE	8	Unmodified	_SSVPLFAE_					0	0	0		ENST00000454558.2_2_2:97203163-97203835:+|nuORF	ENST00000454558.2_2_2:97203163-97203835:+|nuORF	ENST00000454558.2_2_2:97203163-97203835:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.7525329589844	2	425.221268	848.427984	0.38634	0.00016428	1.5873	0.00067496	1.9736	0.00083924	425.22216994902465	78.231	0.43455	78.231	77.955	78.389	0					29	15	3	0	0	0	0.34218	1	20268	20268		9.3474	0	1	256910			45199	10681	26104	26105	54887	54887					-0.002292817765237487
SSVPLFAE	8	Unmodified	_SSVPLFAE_					0	0	0		ENST00000454558.2_2_2:97203163-97203835:+|nuORF	ENST00000454558.2_2_2:97203163-97203835:+|nuORF	ENST00000454558.2_2_2:97203163-97203835:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.7524719238281	2	425.221268	848.427984	0.22177	9.4303E-05	-0.21613	-9.1904E-05	0.0056425	2.3993E-06	425.22207540494776	78.083	0.46282	78.141	77.927	78.39	0.058151					30	16	3	0	0	0	0.34218	1	20149	20149		9.3474	3.587	1	192650			45200	10681	26104	26105	54888	54888					-0.002292817765237487
SSVSGPRK	8	Unmodified	_SSVSGPRK_					0	0	0			REV__ENSG00000119669|ENST00000238647|IRF2BPL	REV__ENSG00000119669|ENST00000238647|IRF2BPL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.1742248535156	2	409.229959	816.445365	0.124	5.0743E-05	0.64407	0.00026357	0.76807	0.00031432	409.2301301284707	17.257	0.35819	17.196	17.026	17.384	-0.060429					18	12	2	0	0	0	0.34218	1	1530	1530		5.2307	0	1	35635	+		45201	15050	26105	26106	54889	54889					0.0298005854914436
SSVSLPLAK	9	Unmodified	_SSVSLPLAK_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.6247863769531	2	451.271293	900.528032	0.20958	9.4577E-05	-0.2103	-9.49E-05	-0.00071559	-3.2293E-07	451.2711178531429	40.116	0.61494	40.116	39.886	40.501	0					34	21	2	0	0	0	0.22674	1	8588	8588		17.113	0	1	241330			45202	569	26106	26107	54890	54890					0.07378955557271638
SSVSLPLAK	9	Unmodified	_SSVSLPLAK_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.6246337890625	2	451.271293	900.528032	0.40336	0.00018203	-0.64196	-0.0002897	-0.23859	-0.00010767	451.2709518830023	40	0.53266	40.092	39.887	40.42	0.09267					33	18	2	0	0	0	0.18123	1	8541	8541		21.537	0	1	201600			45203	569	26106	26107	54891	54891					0.07378955557271638
SSVSLPLAK	9	Unmodified	_SSVSLPLAK_					0	0	0		ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	ENSG00000034693|ENST00000367591|PEX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.6246337890625	2	451.271293	900.528032	0.28303	0.00012772	-0.56056	-0.00025296	-0.27753	-0.00012524	451.2709902558733	40.024	0.52384	40.124	39.844	40.368	0.099407					33	18	2	0	0	0	0.18123	1	8509	8509		34.402	6.7729	1	263930			45204	569	26106	26107	54892	54892					0.07378955557271638
SSVTRPVQK	9	Unmodified	_SSVTRPVQK_					0	0	0			REV__ENSG00000126787|ENST00000247191|DLGAP5	REV__ENSG00000126787|ENST00000247191|DLGAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2913818359375	2	501.290548	1000.56654	0.024118	1.209E-05	0.75333	0.00037764	0.77745	0.00038973	501.29149529211514	13.556	0.77742	13.556	13.336	14.113	0					89	26	4	0	0	0	0.0079761	1	450	450		82.529	17.294	1	6180300	+		45205	15323	26107	26108	54893	54893					0.06628261191804086
SSVTRPVQK	9	Unmodified	_SSVTRPVQK_					0	0	0			REV__ENSG00000126787|ENST00000247191|DLGAP5	REV__ENSG00000126787|ENST00000247191|DLGAP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.290771484375	2	501.290548	1000.56654	0.024118	1.209E-05	0.75333	0.00037764	0.77745	0.00038973	501.29149529211514	13.556	0.77742	13.556	13.336	14.113	0					89	26	4	0	0	0	0.099099	1	496	496		55.503	11.644	1	6180300	+		45206	15323	26107	26108	54894	54894					0.06628261191804086
SSVTRPVQK	9	Unmodified	_SSVTRPVQK_					0	0	0			REV__ENSG00000126787|ENST00000247191|DLGAP5	REV__ENSG00000126787|ENST00000247191|DLGAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2915344238281	2	501.290548	1000.56654	-0.024004	-1.2033E-05	0.85172	0.00042696	0.82772	0.00041493	501.291522001177	13.629	0.86678	13.53	13.217	14.084	-0.099291					107	30	5	0	0	0	0.0079761	1	469	469		82.529	22.455	1	6127600	+		45207	15323	26107	26108	54895	54895					0.06628261191804086
SSVTRPVQK	9	Unmodified	_SSVTRPVQK_					0	0	0			REV__ENSG00000126787|ENST00000247191|DLGAP5	REV__ENSG00000126787|ENST00000247191|DLGAP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2911071777344	2	501.290548	1000.56654	-0.024004	-1.2033E-05	0.85172	0.00042696	0.82772	0.00041493	501.291522001177	13.629	0.86678	13.53	13.217	14.084	-0.099291					107	30	5	0	0	0	0.051692	1	514	514		72.968	10.395	1	6127600	+		45208	15323	26107	26108	54896	54896					0.06628261191804086
SSVTRPVQK	9	Unmodified	_SSVTRPVQK_					0	0	0			REV__ENSG00000126787|ENST00000247191|DLGAP5	REV__ENSG00000126787|ENST00000247191|DLGAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2914733886719	2	501.290548	1000.56654	-0.036669	-1.8382E-05	0.87411	0.00043818	0.83744	0.0004198	501.2915190141175	13.655	1.1791	13.587	13.329	14.508	-0.067496					104	41	4	0	0	0	0.020233	1	475	475		63.961	12.331	1	6284200	+		45209	15323	26107	26108	54897	54897					0.06628261191804086
SSVTRPVQK	9	Unmodified	_SSVTRPVQK_					0	0	0			REV__ENSG00000126787|ENST00000247191|DLGAP5	REV__ENSG00000126787|ENST00000247191|DLGAP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2909240722656	2	501.290548	1000.56654	-0.036669	-1.8382E-05	0.87411	0.00043818	0.83744	0.0004198	501.2915190141175	13.655	1.1791	13.587	13.329	14.508	-0.067496					104	41	4	0	0	0	0.059216	1	515	515		69.105	4.8686	1	6284200	+		45210	15323	26107	26108	54898	54898					0.06628261191804086
SSVTTTESIKR	11	Unmodified	_SSVTTTESIKR_					0	0	0		ENST00000481822.1_1_1:155223346-155224854:-|nuORF;nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3	ENST00000481822.1_1_1:155223346-155224854:-|nuORF	ENST00000481822.1_1_1:155223346-155224854:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.8281860351562	2	604.827692	1207.64083	-0.013761	-8.3228E-06	0.85297	0.0005159	0.83921	0.00050758	604.8283544253311	13.933	0.29122	13.867	13.716	14.007	-0.066068					24	9	3	0	0	0	0.47649	1	589	589		1.1933	0	1	97011			45211	5485	26108	26109	54899	54899					0.0453155949264783
SSWDNMDYVW	10	Unmodified	_SSWDNMDYVW_					0	0	0		nc|ENSG00000146063|Q8WV44-4|TRIM41;ENST00000508930.1_1_5:180650987-180660460:+|nuORF;nc|ENSG00000146063|Q8WV44-2|TRIM41;ENSG00000146063|ENST00000315073|TRIM41	nc|ENSG00000146063|Q8WV44-4|TRIM41	nc|ENSG00000146063|Q8WV44-4|TRIM41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8824157714844	3	434.841372	1301.50229	0.0093529	4.067E-06	1.5072	0.00065538	1.5165	0.00065944	434.84220057379724	20.668	0.71314	20.668	20.395	21.108	0					51	24	3	0	0	0	0.32143	1	2573	2573		0.56317	0	1	203680			45212	4686	26109	26110	54900	54900					-0.13640306747333852
SSWDNMDYVW	10	Unmodified	_SSWDNMDYVW_					0	0	0		nc|ENSG00000146063|Q8WV44-4|TRIM41;ENST00000508930.1_1_5:180650987-180660460:+|nuORF;nc|ENSG00000146063|Q8WV44-2|TRIM41;ENSG00000146063|ENST00000315073|TRIM41	nc|ENSG00000146063|Q8WV44-4|TRIM41	nc|ENSG00000146063|Q8WV44-4|TRIM41	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	434.841372	1301.50229	0.29459	0.0001281	1.2609	0.00054831	1.5555	0.00067641	434.8421469462918	20.844	0.53861	20.734	20.553	21.091	-0.11003	0.030616	-0.00011386	NaN	0.56317	51	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203200			45213	4686	26109	26110							-0.13640306747333852
SSWDNMDYVW	10	Unmodified	_SSWDNMDYVW_					0	0	0		nc|ENSG00000146063|Q8WV44-4|TRIM41;ENST00000508930.1_1_5:180650987-180660460:+|nuORF;nc|ENSG00000146063|Q8WV44-2|TRIM41;ENSG00000146063|ENST00000315073|TRIM41	nc|ENSG00000146063|Q8WV44-4|TRIM41	nc|ENSG00000146063|Q8WV44-4|TRIM41	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	434.841372	1301.50229	0.15874	6.9027E-05	1.3046	0.00056729	1.4633	0.00063631	434.8421527461566	20.76	0.61426	20.707	20.418	21.033	-0.05291	0.0042087	-5.6933E-05	NaN	0.56317	61	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218600			45214	4686	26109	26110							-0.13640306747333852
SSWELQLFLF	10	Unmodified	_SSWELQLFLF_					0	0	0		nc|ENSG00000182652|Q8NH05|OR4Q3;ENSG00000182652|ENST00000642117|OR4Q3	nc|ENSG00000182652|Q8NH05|OR4Q3	nc|ENSG00000182652|Q8NH05|OR4Q3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	635.33056640625	2	635.329339	1268.64412	0.54595	0.00034686	0.8855	0.00056258	1.4314	0.00090944	635.3301896528666	85.17	0.84293	85.17	84.871	85.714	0					72	32	3	0	0	0	0.39009	1	22308	22308		5.2969	0	1	612450			45215	7307	26110	26111	54901	54901					0.02054854337325196
SSWLTLRT	8	Unmodified	_SSWLTLRT_					0	0	0		ENST00000415136.6_2_1:20981990-20982236:-|nuORF	ENST00000415136.6_2_1:20981990-20982236:-|nuORF	ENST00000415136.6_2_1:20981990-20982236:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.266357421875	2	482.266542	962.51853	0.052342	2.5243E-05	-0.064866	-3.1283E-05	-0.012525	-6.0403E-06	482.2666807336172	18.364	0.82653	18.246	17.957	18.784	-0.11739					40	28	2	0	0	0	0.45544	2	1886	1886;1938		3.9444	1.0506	1	49920			45216	10305	26111	26112	54902;54903	54902					0.03577187271753246
SSWRFRRDC	9	Unmodified	_SSWRFRRDC_					0	0	0			REV__nc|ENSG00000288393|Q92670|ZNF75CP	REV__nc|ENSG00000288393|Q92670|ZNF75CP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.54229736328125	3	404.861213	1211.56181	-0.49929	-0.00020214	3.0678	0.001242	2.5685	0.0010399	404.8624529608898	13.562	0.38104	13.462	13.337	13.718	-0.099291					22	13	2	0	0	0	0.25949	1	493	493		4.897	2.2658	1	40696	+		45217	23244	26112	26113	54904	54904					-0.03550946222571838
SSWVCLWSP	9	Unmodified	_SSWVCLWSP_					0	0	0			REV__ENST00000340491.8_1_20:35090906-35090996:+|nuORF	REV__ENST00000340491.8_1_20:35090906-35090996:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7468872070312	2	532.747127	1063.4797	0.10307	5.4913E-05	-0.32125	-0.00017114	-0.21817	-0.00011623	532.7468723562151	13.726	0.3683	13.66	13.521	13.889	-0.066068					29	12	3	0	0	0	0.31038	1	527	527		7.2892	0	1	142880	+		45218	20109	26113	26114	54905	54905					-0.04949861354270979
SSYAILSKL	9	Unmodified	_SSYAILSKL_					0	0	0			REV__ENST00000498999.2_1_5:134262808-134262898:-|nuORF	REV__ENST00000498999.2_1_5:134262808-134262898:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.284423828125	2	491.2844	980.554247	0.44886	0.00022052	0.37659	0.00018501	0.82546	0.00040553	491.28425874805464	48.985	1.0672	48.985	48.448	49.516	0					82	38	4	0	0	0	0.0041491	1	11268	11268		93.166	6.834	1	2297700	+		45219	18883	26114	26115	54906	54906					0.06319224728747486
SSYEDKNLLKK	11	Unmodified	_SSYEDKNLLKK_					0	0	0		nc|ENSG00000047346|Q32MH5-2|ATOSA;ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-3|ATOSA	nc|ENSG00000047346|Q32MH5-2|ATOSA	nc|ENSG00000047346|Q32MH5-2|ATOSA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.2418212890625	3	442.241753	1323.70343	0.078625	3.4771E-05	-0.26029	-0.00011511	-0.18166	-8.0338E-05	442.2416242723391	22.263	0.59875	22.263	21.996	22.594	0					50	20	3	0	0	0	0.20882	1	3077	3077		30.414	22.468	1	400090			45220	629	26115	26116	54907	54907					0.054527055608332375
SSYEDKNLLKK	11	Unmodified	_SSYEDKNLLKK_					0	0	0		nc|ENSG00000047346|Q32MH5-2|ATOSA;ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-3|ATOSA	nc|ENSG00000047346|Q32MH5-2|ATOSA	nc|ENSG00000047346|Q32MH5-2|ATOSA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.2415466308594	3	442.241753	1323.70343	0.062536	2.7656E-05	-0.29399	-0.00013002	-0.23146	-0.00010236	442.24154510065125	22.237	0.53074	22.136	21.917	22.448	-0.10034					47	19	3	0	0	0	0.3074	1	3114	3114		27.129	20.505	1	369980			45221	629	26115	26116	54908	54908					0.054527055608332375
SSYEDKNLLKK	11	Unmodified	_SSYEDKNLLKK_					0	0	0		nc|ENSG00000047346|Q32MH5-2|ATOSA;ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-3|ATOSA	nc|ENSG00000047346|Q32MH5-2|ATOSA	nc|ENSG00000047346|Q32MH5-2|ATOSA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2418212890625	3	442.241753	1323.70343	0.01876	8.2964E-06	0.098011	4.3345E-05	0.11677	5.1641E-05	442.24169470253565	22.242	0.7479	22.193	21.926	22.674	-0.049377					52	25	3	0	0	0	0.088648	1	3104	3104		42.068	32.304	1	318740			45222	629	26115	26116	54909	54909					0.054527055608332375
SSYLSVRLP	9	Unmodified	_SSYLSVRLP_					0	0	0			REV__ENST00000589421.1_1_19:1478470-1478902:-|nuORF	REV__ENST00000589421.1_1_19:1478470-1478902:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.7431945800781	2	511.287474	1020.5604	0.25679	0.00013129	-0.9579	-0.00048976	-0.70111	-0.00035847	511.2873716046463	46.63	0.76418	46.63	46.168	46.932	0					57	27	3	0	0	0	0.24848	1	10581	10581		13.906	0.86358	1	582860	+		45223	22551	26116	26117	54910	54910					0.05093742960275449
SSYNEWDPLE	10	Unmodified	_SSYNEWDPLE_					0	0	0		nc|ENSG00000171766|P50440-3|GATM;nc|ENSG00000171766|P50440-2|GATM;ENSG00000171766|ENST00000396659|GATM	nc|ENSG00000171766|P50440-3|GATM	nc|ENSG00000171766|P50440-3|GATM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.2620849609375	2	620.26185	1238.50915	0.27021	0.0001676	0.079701	4.9436E-05	0.34991	0.00021704	620.2619035929538	38.14	0.61445	38.14	37.82	38.434	0					51	21	3	0	0	0	0.36786	1	7948	7948		9.3831	1.2276	1	403550			45224	6573	26117	26118	54911	54911					-0.10056670595099604
SSYPTGLADVK	11	Unmodified	_SSYPTGLADVK_					0	0	0		ENST00000530439.1_2_11:10327370-10327646:+|nuORF;ENSG00000148926|ENST00000278175|ADM	ENST00000530439.1_2_11:10327370-10327646:+|nuORF	ENST00000530439.1_2_11:10327370-10327646:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.2929077148438	2	569.292953	1136.57135	0.07342	4.1798E-05	-0.8757	-0.00049853	-0.80228	-0.00045673	569.2926649613058	41.014	0.90863	41.014	40.473	41.382	0					55	33	2	0	0	0	0.0012456	1	8810	8810		93.448	62.18	1	708640			45225	4835	26118	26119	54912	54912					0.008531005438726424
SSYPTGLADVK	11	Unmodified	_SSYPTGLADVK_					0	0	0		ENST00000530439.1_2_11:10327370-10327646:+|nuORF;ENSG00000148926|ENST00000278175|ADM	ENST00000530439.1_2_11:10327370-10327646:+|nuORF	ENST00000530439.1_2_11:10327370-10327646:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	569.292953	1136.57135	0.45778	0.00026061	-1.1263	-0.00064117	-0.66848	-0.00038056	569.2925877844526	40.836	0.60741	40.929	40.557	41.165	0.09267	-0.0059097	-0.00019704	NaN	93.448	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	817730			45226	4835	26118	26119							0.008531005438726424
SSYPTGLADVK	11	Unmodified	_SSYPTGLADVK_					0	0	0		ENST00000530439.1_2_11:10327370-10327646:+|nuORF;ENSG00000148926|ENST00000278175|ADM	ENST00000530439.1_2_11:10327370-10327646:+|nuORF	ENST00000530439.1_2_11:10327370-10327646:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	569.292953	1136.57135	0.15382	8.7569E-05	-0.88164	-0.00050191	-0.72782	-0.00041434	569.2926142593457	40.762	0.75337	40.861	40.427	41.18	0.099407	-0.073676	8.1489E-05	NaN	93.448	51	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	827220			45227	4835	26118	26119							0.008531005438726424
SSYREAVFK	9	Unmodified	_SSYREAVFK_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7828979492188	2	543.782556	1085.55056	0.37059	0.00020152	-0.20989	-0.00011413	0.1607	8.7387E-05	543.7823822284797	26.605	0.49094	26.605	26.35	26.841	0					34	16	3	0	0	0	0.2869	1	4382	4382		10.8	1.4164	1	258360			45228	4168	26119	26120	54913	54913					0.01120554954900399
SSYREAVFK	9	Unmodified	_SSYREAVFK_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.783203125	2	543.782556	1085.55056	0.49903	0.00027136	0.15844	8.6155E-05	0.65746	0.00035752	543.7825878534995	26.596	0.50573	26.557	26.316	26.822	-0.038671					35	17	3	0	0	0	0.25714	1	4387	4387		15.248	5.8654	1	268730			45229	4168	26119	26120	54914	54914					0.01120554954900399
SSYREAVFK	9	Unmodified	_SSYREAVFK_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.7828979492188	2	543.782556	1085.55056	0.76718	0.00041718	-0.51882	-0.00028212	0.24837	0.00013506	543.7822306470706	26.663	0.50854	26.641	26.409	26.918	-0.022236					34	17	3	0	0	0	0.16685	1	4420	4420		28.495	15.452	1	315400			45230	4168	26119	26120	54915	54915					0.01120554954900399
SSYSRALEM	9	Oxidation (M)	_SSYSRALEM(Oxidation (M))_		SSYSRALEM(1)		SSYSRALEM(78)	0	0	1		ENSG00000113312|ENST00000231238|TTC1	ENSG00000113312|ENST00000231238|TTC1	ENSG00000113312|ENST00000231238|TTC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2425537109375	2	530.242406	1058.47026	0.36641	0.00019429	-0.047937	-2.5418E-05	0.31848	0.00016887	530.2423514844905	27.252	0.63571	27.252	26.979	27.615	0					37	21	2	0	0	0	0.010888	2	4630	4577;4630		78.06	39.885	1	541950			45231	2491	26120	26121	54916;54917	54917		305			-0.05663674430456922
SSYSRALEM	9	Oxidation (M)	_SSYSRALEM(Oxidation (M))_		SSYSRALEM(1)		SSYSRALEM(78)	0	0	1		ENSG00000113312|ENST00000231238|TTC1	ENSG00000113312|ENST00000231238|TTC1	ENSG00000113312|ENST00000231238|TTC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2426147460938	2	530.242406	1058.47026	0.20073	0.00010644	0.065249	3.4598E-05	0.26598	0.00014104	530.2424124986128	27.27	0.67857	27.249	27.041	27.72	-0.021412					53	23	4	0	0	0	0.010888	2	4599	4599;4645		78.06	39.885	1	646610			45232	2491	26120	26121	54918;54919	54918		305			-0.05663674430456922
SSYSRALEM	9	Oxidation (M)	_SSYSRALEM(Oxidation (M))_		SSYSRALEM(1)		SSYSRALEM(78)	0	0	1		ENSG00000113312|ENST00000231238|TTC1	ENSG00000113312|ENST00000231238|TTC1	ENSG00000113312|ENST00000231238|TTC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2424926757812	2	530.242406	1058.47026	0.32689	0.00017333	-0.20732	-0.00010993	0.11956	6.3398E-05	530.2423305380861	27.303	0.661	27.292	27.042	27.703	-0.011562					56	22	4	0	0	0	0.010888	1	4598	4598		78.06	39.885	1	637300			45233	2491	26120	26121	54920	54920		305			-0.05663674430456922
SSYVQEPK	8	Unmodified	_SSYVQEPK_					0	0	0			REV__nc|ENSG00000166343|Q4VC12-2|MSS51	REV__nc|ENSG00000166343|Q4VC12-2|MSS51	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2525634765625	2	469.234907	936.455261	-0.034761	-1.6311E-05	0.46947	0.00022029	0.43471	0.00020398	469.2351195231967	25.171	0.60197	25.171	24.902	25.504	0					29	20	2	0	0	0	0.34167	1	4035	4035		11.64	2.2572	1	35434	+		45234	17311	26121	26122	54921	54921					-0.015507982361327777
SSYYMIGEQK	10	Oxidation (M)	_SSYYM(Oxidation (M))IGEQK_		SSYYM(1)IGEQK		SSYYM(77)IGEQK	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.7657470703125	2	611.276446	1220.53834	0.11772	7.1959E-05	1.9666	0.0012021	2.0843	0.0012741	611.2775278536569	33.704	0.63015	33.771	33.469	34.099	0.066704					37	22	3	0	0	0	0.015119	1	6563	6563		77.049	63.142	1	170420			45235	6107	26122	26123	54922	54922		715			-0.06310849570445498
STAAFFLLR	9	Unmodified	_STAAFFLLR_					0	0	0		nc|ENSG00000137700|O43826|SLC37A4;ENSG00000137700|ENST00000330775|SLC37A4;nc|ENSG00000137700|O43826-2|SLC37A4;ENST00000532085.1_1_11:118895622-118896243:-|nuORF;ENST00000525102.5_1_11:118895622-118898521:-|nuORF;ENST00000525039.5_1_11:118895622-118898521:-|nuORF	nc|ENSG00000137700|O43826|SLC37A4	nc|ENSG00000137700|O43826|SLC37A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.293212890625	2	513.292559	1024.57057	0.4386	0.00022513	0.4185	0.00021481	0.8571	0.00043994	513.2930238586504	64.699	1.8671	64.699	64.316	66.183	0					212	67	6	0	0	0	1.2283E-05	2	16119	16119;16166		155.03	107.28	1	18060000			45236	4067	26123	26124	54923;54924	54923					0.05926350685513171
STAAFFLLR	9	Unmodified	_STAAFFLLR_					0	0	0		nc|ENSG00000137700|O43826|SLC37A4;ENSG00000137700|ENST00000330775|SLC37A4;nc|ENSG00000137700|O43826-2|SLC37A4;ENST00000532085.1_1_11:118895622-118896243:-|nuORF;ENST00000525102.5_1_11:118895622-118898521:-|nuORF;ENST00000525039.5_1_11:118895622-118898521:-|nuORF	nc|ENSG00000137700|O43826|SLC37A4	nc|ENSG00000137700|O43826|SLC37A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.293212890625	2	513.292559	1024.57057	0.37539	0.00019268	0.49095	0.000252	0.86634	0.00044469	513.2930586924405	64.612	1.947	64.705	64.309	66.255	0.09288					214	71	6	0	0	0	9.2305E-05	2	16081	16081;16131		142.08	94.331	1	18702000			45237	4067	26123	26124	54925;54926	54925					0.05926350685513171
STAAFFLLR	9	Unmodified	_STAAFFLLR_					0	0	0		nc|ENSG00000137700|O43826|SLC37A4;ENSG00000137700|ENST00000330775|SLC37A4;nc|ENSG00000137700|O43826-2|SLC37A4;ENST00000532085.1_1_11:118895622-118896243:-|nuORF;ENST00000525102.5_1_11:118895622-118898521:-|nuORF;ENST00000525039.5_1_11:118895622-118898521:-|nuORF	nc|ENSG00000137700|O43826|SLC37A4	nc|ENSG00000137700|O43826|SLC37A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8026733398438	2	513.292559	1024.57057	0.24311	0.00012479	-1.2255	-0.00062905	-0.98242	-0.00050427	513.2918663529322	66.875	0.97275	66.959	66.246	67.219	0.083832					51	34	2	0	0	0	0.22061	1	16599	16599		18.146	0	1	276660			45238	4067	26123	26124	54927	54927					0.05926350685513171
STAAFFLLR	9	Unmodified	_STAAFFLLR_					0	0	0		nc|ENSG00000137700|O43826|SLC37A4;ENSG00000137700|ENST00000330775|SLC37A4;nc|ENSG00000137700|O43826-2|SLC37A4;ENST00000532085.1_1_11:118895622-118896243:-|nuORF;ENST00000525102.5_1_11:118895622-118898521:-|nuORF;ENST00000525039.5_1_11:118895622-118898521:-|nuORF	nc|ENSG00000137700|O43826|SLC37A4	nc|ENSG00000137700|O43826|SLC37A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.29345703125	2	513.292559	1024.57057	0.27874	0.00014308	0.54426	0.00027936	0.823	0.00042244	513.2930662837409	64.747	1.8371	64.738	64.389	66.226	-0.0095291					194	66	5	0	0	0	1.2283E-05	2	16102	16102;16145		155.03	107.28	1	17499000			45239	4067	26123	26124	54928;54929	54928					0.05926350685513171
STAAFFLLR	9	Unmodified	_STAAFFLLR_					0	0	0		nc|ENSG00000137700|O43826|SLC37A4;ENSG00000137700|ENST00000330775|SLC37A4;nc|ENSG00000137700|O43826-2|SLC37A4;ENST00000532085.1_1_11:118895622-118896243:-|nuORF;ENST00000525102.5_1_11:118895622-118898521:-|nuORF;ENST00000525039.5_1_11:118895622-118898521:-|nuORF	nc|ENSG00000137700|O43826|SLC37A4	nc|ENSG00000137700|O43826|SLC37A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8028564453125	2	513.292559	1024.57057	0.046954	2.4101E-05	-0.90047	-0.00046221	-0.85352	-0.00043811	513.2920910616635	67.028	1.1037	67.013	66.22	67.324	-0.015274					62	39	3	0	0	0	0.15943	1	16615	16615		32.786	15.673	1	309350			45240	4067	26123	26124	54930	54930					0.05926350685513171
STAAFFLLR	9	Unmodified	_STAAFFLLR_					0	0	0		nc|ENSG00000137700|O43826|SLC37A4;ENSG00000137700|ENST00000330775|SLC37A4;nc|ENSG00000137700|O43826-2|SLC37A4;ENST00000532085.1_1_11:118895622-118896243:-|nuORF;ENST00000525102.5_1_11:118895622-118898521:-|nuORF;ENST00000525039.5_1_11:118895622-118898521:-|nuORF	nc|ENSG00000137700|O43826|SLC37A4	nc|ENSG00000137700|O43826|SLC37A4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.292559	1024.57057	0.30805	0.00015812	-1.3321	-0.00068376	-1.0241	-0.00052564	513.2919450357357	66.959	0.59215	66.959	66.63	67.222	0	-0.018269	-0.00016985	NaN	26.268	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267700			45241	4067	26123	26124							0.05926350685513171
STAAVGVLK	9	Unmodified	_STAAVGVLK_					0	0	0		RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant;ENSG00000081019|ENST00000261441|RSBN1;ENST00000476412.5_1_1:114308604-114340019:-|nuORF	RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant	RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5631103515625	2	423.258185	844.501818	-0.30687	-0.00012988	0.45263	0.00019158	0.14576	6.1694E-05	423.25828599459425	28.346	0.72997	28.346	27.905	28.635	0.00046921					34	25	2	0	0	0	0.21389	1	4971	4971		25.399	8.457	1	147950			45242	1174	26124	26125	54931	54931					0.07334686385809164
STAAVGVLK	9	Unmodified	_STAAVGVLK_					0	0	0		RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant;ENSG00000081019|ENST00000261441|RSBN1;ENST00000476412.5_1_1:114308604-114340019:-|nuORF	RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant	RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	423.258185	844.501818	-0.3161	-0.00013379	0.086409	3.6573E-05	-0.22969	-9.7218E-05	423.25822384680197	28.395	0.59635	28.395	27.981	28.578	0	0.018913	-7.626E-05	NaN	25.399	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159250			45243	1174	26124	26125							0.07334686385809164
STAAVGVLK	9	Unmodified	_STAAVGVLK_					0	0	0		RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant;ENSG00000081019|ENST00000261441|RSBN1;ENST00000476412.5_1_1:114308604-114340019:-|nuORF	RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant	RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	423.258185	844.501818	-0.25951	-0.00010984	0.15582	6.5953E-05	-0.10369	-4.3887E-05	423.258243861444	28.391	0.60541	28.387	27.994	28.599	-0.0042572	0.010783	-1.7501E-05	NaN	25.399	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149620			45244	1174	26124	26125							0.07334686385809164
STAEVVNPTK	10	Unmodified	_STAEVVNPTK_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8187866210938	2	523.279846	1044.54514	0.40802	0.00021351	-3.7865	-0.0019814	-3.3785	-0.0017679	523.7770987759412	39.583	0.11311	39.676	39.607	39.72	0.09267					5	3	2	0	0	0	0.30586	1	8377	8377		19.257	2.1441	1	67641	+		45245	18519	26125	26126	54932	54932					0.02464831372435583
STAGAVPVRN	10	Unmodified	_STAGAVPVRN_					0	0	0		ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	ENSG00000140259|ENST00000267812|MFAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80029296875	2	486.267073	970.519593	0.84112	0.00040901	2.242	0.0010902	3.0831	0.0014992	486.26969289081336	78.133	0.13626	78.102	78.034	78.17	-0.030434					5	4	2	0	0	0	0.31039	1	20164	20164		18.146	2.2992	1	47201			45246	4287	26126	26127	54933	54933					0.033154016406683695
STAIFTCDL	9	Unmodified	_STAIFTCDL_					0	0	0		nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3	nc|ENSG00000164796|Q7Z407-4|CSMD3	nc|ENSG00000164796|Q7Z407-4|CSMD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7314758300781	2	485.731143	969.447733	0.43836	0.00021293	0.48709	0.00023659	0.92545	0.00044952	485.7312807834737	79.434	1.7407	79.405	78.935	80.675	-0.028931					139	66	4	0	0	0	0.12846	1	20590	20590		34.102	7.2188	1	1153100			45247	5877	26127	26128	54934	54934					-0.03821273828077665
STAIFTCDL	9	Unmodified	_STAIFTCDL_					0	0	0		nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3	nc|ENSG00000164796|Q7Z407-4|CSMD3	nc|ENSG00000164796|Q7Z407-4|CSMD3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	485.731143	969.447733	0.34302	0.00016662	0.58116	0.00028229	0.92418	0.00044891	485.73132660664123	79.348	1.6766	79.409	78.922	80.599	0.061417	0.001977	1.7948E-05	NaN	34.102	130	68	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	896920			45248	5877	26127	26128							-0.03821273828077665
STAIKPQVQ	9	Unmodified	_STAIKPQVQ_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000564315.1_1_16:70516583-70530267:-|nuORF	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2686767578125	2	486.279649	970.544745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.465	1	88.554	88.054	89.054	0.089195								0	0	0	0.18374	1	23364	23364		26.884	14.352	1				45249	1805	26128	26129	54935	54935					0.05829456443234449
STAILPEGQKW	11	Unmodified	_STAILPEGQKW_					0	0	0			REV__ENST00000488285.1_1_9:130486913-130493681:+|nuORF	REV__ENST00000488285.1_1_9:130486913-130493681:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.80908203125	2	615.32987	1228.64519	0.35421	0.00021796	-0.89611	-0.0005514	-0.5419	-0.00033345	615.3290238618713	29.691	0.33701	29.691	29.58	29.917	0					21	11	2	0	0	0	0.33175	1	5386	5386		4.897	0	1	103560	+		45250	17362	26129	26130	54936	54936					0.04001068706224942
STAILPEGQKW	11	Unmodified	_STAILPEGQKW_					0	0	0			REV__ENST00000488285.1_1_9:130486913-130493681:+|nuORF	REV__ENST00000488285.1_1_9:130486913-130493681:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	615.32987	1228.64519	0.22115	0.00013608	-0.071997	-4.4302E-05	0.14915	9.1777E-05	615.3298936441549	29.666	0.35731	29.678	29.5	29.858	0.012266	-0.012508	0.0002484	NaN	4.897	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80312	+		45251	17362	26129	26130							0.04001068706224942
STAILPEGQKW	11	Unmodified	_STAILPEGQKW_					0	0	0			REV__ENST00000488285.1_1_9:130486913-130493681:+|nuORF	REV__ENST00000488285.1_1_9:130486913-130493681:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	615.32987	1228.64519	-0.012114	-7.4538E-06	-0.14433	-8.8812E-05	-0.15645	-9.6266E-05	615.3296270504597	29.689	0.34542	29.702	29.564	29.91	0.013474	0.01179	0.00015938	NaN	4.897	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117340	+		45252	17362	26129	26130							0.04001068706224942
STAILQSQVV	10	Unmodified	_STAILQSQVV_					0	0	0			REV__nc|ENSG00000111641|P46087-3|NOP2	REV__nc|ENSG00000111641|P46087-3|NOP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8187866210938	2	523.298039	1044.58152	0.43704	0.0002287	-1.1694	-0.00061197	-0.7324	-0.00038326	523.2974877768847	39.723	0.19262	39.823	39.676	39.868	0.099407					9	6	2	0	0	0	0.25875	1	8366	8366		32.305	10.559	1	221640	+		45253	22941	26130	26131	54937	54937					0.06101708269147821
STAILRGRP	9	Unmodified	_STAILRGRP_					0	0	0			REV__ENST00000490577.5_1_13:50656344-50656494:+|nuORF	REV__ENST00000490577.5_1_13:50656344-50656494:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001403808594	2	485.793258	969.571963	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.317	1	52.368	51.868	52.868	0.050575								0	0	0	0.13597	1	12272	12272		37.974	3.8716	1		+		45254	21603	26131	26132	54938	54938					0.08595984774285625
STAINKAPA	9	Unmodified	_STAINKAPA_					0	0	0			REV__nc|ENSG00000166313|O00213-2|APBB1	REV__nc|ENSG00000166313|O00213-2|APBB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.9211730957031	2	436.745442	871.476331	-0.1438	-6.2804E-05	-3.092	-0.0013504	-3.2358	-0.0014132	436.74406583637347	19.085	0.31382	18.968	18.862	19.175	-0.11739					15	10	2	0	0	0	0.26031	1	2152	2152		3.5965	0	1	17903	+		45255	17306	26132	26133	54939	54939					0.03545211863365694
STAIQELFK	9	Unmodified	_STAIQELFK_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.7874755859375	2	518.787307	1035.56006	0.64261	0.00033338	0.71334	0.00037007	1.356	0.00070345	518.7877326956466	54.149	1.2946	54.149	53.516	54.811	0					72	47	2	0	0	0	0.00054549	2	12881	12835;12881		128.57	59.468	1	3559400			45256	7841;8646	26133	26134	54940;54941	54941					0.04370323240414109
STAIQELFK	9	Unmodified	_STAIQELFK_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7875366210938	2	518.787307	1035.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.099	1	54.162	53.662	54.662	0.063202								0	0	0	1.0445E-07	1	12823	12823		139.78	61.054	1				45257	7841;8646	26133	26134	54942	54942					0.04370323240414109
STAIQELFK	9	Unmodified	_STAIQELFK_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.78759765625	2	518.787307	1035.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.262	1	54.325	53.825	54.825	0.063202								0	0	0	2.5475E-06	1	12873	12873		117.84	48.733	1				45258	7841;8646	26133	26134	54943	54943					0.04370323240414109
STAIQELFK	9	Unmodified	_STAIQELFK_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000176014|ENST00000317702|TUBB6;ENST00000417736.2_1_18:12308439-12326126:+|nuORF	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7874145507812	2	518.787307	1035.56006	0.54788	0.00028423	0.057424	2.9791E-05	0.6053	0.00031402	518.7873054249156	54.543	1.0535	54.527	54.03	55.083	-0.015923					129	37	5	0	0	0	3.4202E-05	3	12896	12896;12952;13054		151.48	72.752	1	4048200			45259	7841;8646	26133	26134	54944;54945;54946	54944					0.04370323240414109
STAIYHTFVAL	11	Unmodified	_STAIYHTFVAL_					0	0	0		ENST00000376494.1_1_13:99373362-99378793:-|nuORF;ENSG00000088386|ENST00000376503|SLC15A1	ENST00000376494.1_1_13:99373362-99378793:-|nuORF	ENST00000376494.1_1_13:99373362-99378793:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.21075439453125	3	408.220401	1221.63937	0.097695	3.9881E-05	0.21274	8.6843E-05	0.31043	0.00012672	408.22073183455984	17.148	0.80113	17.088	16.528	17.33	-0.060431					63	28	4	0	0	0	0.44523	1	1568	1568		2.4348	0.18206	1	144860			45260	1323	26134	26135	54947	54947					0.03741970194573696
STAKPPKEILK	11	Unmodified	_STAKPPKEILK_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L;TRMT1L|p.K275Nfs*6|1|0.16|ENSG00000121486|chr1:185143391-185143391|T/-|frameshift_variant	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.5834655761719	3	404.583451	1210.72852	-0.20096	-8.1304E-05	0.68767	0.00027822	0.48671	0.00019692	404.58359166406115	19.704	0.90203	19.704	19.211	20.113	0					68	32	3	0	0	0	0.31096	1	2325	2325		21.241	16.835	1	172200			45261	2998	26135	26136	54948	54948					0.13158805154080255
STAKPPKEILK	11	Unmodified	_STAKPPKEILK_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L;TRMT1L|p.K275Nfs*6|1|0.16|ENSG00000121486|chr1:185143391-185143391|T/-|frameshift_variant	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5835266113281	3	404.583451	1210.72852	-0.088685	-3.588E-05	0.50863	0.00020578	0.41995	0.0001699	404.5835430813256	19.944	0.66607	19.828	19.488	20.154	-0.11592					51	22	3	0	0	0	0.32021	1	2392	2392		20.411	14.177	1	177830			45262	2998	26135	26136	54949	54949					0.13158805154080255
STAKPPKEILK	11	Unmodified	_STAKPPKEILK_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L;TRMT1L|p.K275Nfs*6|1|0.16|ENSG00000121486|chr1:185143391-185143391|T/-|frameshift_variant	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.5835266113281	3	404.583451	1210.72852	0.035074	1.4191E-05	0.44355	0.00017945	0.47862	0.00019364	404.58358046155695	19.847	0.7533	19.791	19.395	20.149	-0.055693					66	26	4	0	0	0	0.2876	1	2363	2363		23.34	17.105	1	223040			45263	2998	26135	26136	54950	54950					0.13158805154080255
STAKSEAQLE	10	Unmodified	_STAKSEAQLE_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2770385742188	2	532.266936	1062.51932	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.427	1	82.406	81.906	82.906	-0.020584								0	0	0	0.35611	1	21500	21500		12.241	0.60036	1				45264	3655	26136	26137	54951	54951					-0.009440628698484943
STAKVPASPL	10	Unmodified	_STAKVPASPL_					0	0	0		nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.79998779296875	2	485.782025	969.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.579	1	77.634	77.134	78.134	0.055412								0	0	0	0.30188	1	20022	20022		27.629	5.8822	1				45265	984	26137	26138	54952	54952					0.06350340586004677
STAKVPASPL	10	Unmodified	_STAKVPASPL_					0	0	0		nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002624511719	2	485.782025	969.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.621	1	78.68	78.18	79.18	0.058151								0	0	0	0.32814	1	20340	20340		24.021	2.2739	1				45266	984	26137	26138	54953	54953					0.06350340586004677
STAKVPASPL	10	Unmodified	_STAKVPASPL_					0	0	0		nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80029296875	2	485.782025	969.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.433	1	78.403	77.903	78.903	-0.030434								0	0	0	0.28989	1	20277	20277		29.082	3.6823	1				45267	984	26137	26138	54954	54954					0.06350340586004677
STALANVSIP	10	Unmodified	_STALANVSIP_					0	0	0		nc|ENSG00000257198|Q63HN1|SPATA31F2P;ENSG00000205108|ENST00000378788|FAM205A	nc|ENSG00000257198|Q63HN1|SPATA31F2P	nc|ENSG00000257198|Q63HN1|SPATA31F2P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.26812744140625	2	486.771657	971.528761	0.33659	0.00016384	-3.0857	-0.001502	-2.7491	-0.0013382	486.76977784088353	88.632	0.65459	88.722	88.394	89.049	0.089203					48	27	2	0	0	0	0.28434	1	23403	23403		25.399	3.6527	1	158930			45268	8273	26138	26139	54955	54955					0.04185750206340799
STALQKILE	9	Unmodified	_STALQKILE_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2805480957031	2	501.795132	1001.57571	0.30805	0.00015458	0.94049	0.00047193	1.2485	0.00062651	501.7954840978575	37.793	0.57218	37.89	37.604	38.176	0.097527					35	20	2	0	0	0	0.17277	1	7791	7791		27.629	2.2295	1	148900			45269	2033	26139	26140	54956	54956					0.07498609757465147
STALTFFLA	9	Unmodified	_STALTFFLA_					0	0	0		ENST00000259983.7_2_6:10683452-10687341:-|nuORF;ENST00000460742.6_2_6:10685095-10687341:-|nuORF	ENST00000259983.7_2_6:10683452-10687341:-|nuORF	ENST00000259983.7_2_6:10683452-10687341:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.78399658203125	2	485.765843	969.517133	0.34458	0.00016738	0.68544	0.00033296	1.03	0.00050035	485.7658230109976	75.915	1.0802	75.883	75.109	76.19	-0.031479					61	39	2	0	0	0	0.21905	1	19606	19606		23.148	6.2061	1	174870			45270	8955	26140	26141	54957	54957					0.03115553182988151
STAPAQLGK	9	Unmodified	_STAPAQLGK_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.7452697753906	2	436.745442	871.476331	-0.17796	-7.7723E-05	-0.29124	-0.0001272	-0.4692	-0.00020492	436.74524790066374	18.503	0.96533	18.503	18.1	19.066	0					72	33	3	0	0	0	0.079752	1	1961	1961		41.84	14.956	1	242500			45271	4620	26141	26142	54958	54958					0.03545211863388431
STAPAQLGK	9	Unmodified	_STAPAQLGK_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.7452087402344	2	436.745442	871.476331	-0.15947	-6.9646E-05	-0.10294	-4.4957E-05	-0.2624	-0.0001146	436.74533221586205	18.62	0.76219	18.502	18.184	18.946	-0.11739					67	26	3	0	0	0	0.079752	2	1976	1976;2031		41.84	14.956	1	253710			45272	4620	26141	26142	54959;54960	54959					0.03545211863388431
STAPAQLGK	9	Unmodified	_STAPAQLGK_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.74530029296875	2	436.745442	871.476331	-0.34796	-0.00015197	-0.029267	-1.2782E-05	-0.37723	-0.00016475	436.74537029196466	18.619	0.81547	18.561	18.199	19.014	-0.058174					65	28	3	0	0	0	0.10197	1	1975	1975		37.974	11.09	1	239560			45273	4620	26141	26142	54961	54961					0.03545211863388431
STAPKLPEK	9	Unmodified	_STAPKLPEK_					0	0	0			REV__ENSG00000198888|ENST00000361390|MT-ND1	REV__ENSG00000198888|ENST00000361390|MT-ND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.24932861328125	2	485.782025	969.549496	0.26474	0.00012861	0.099898	4.8528E-05	0.36464	0.00017714	485.78212296170534	70.401	0.74189	70.401	70.131	70.873	0					38	26	2	0	0	0	0.22596	1	17789	17789		21.747	1.293	1	383690	+		45274	18884	26142	26143	54962	54962					0.06350340586004677
STAPKLPEK	9	Unmodified	_STAPKLPEK_					0	0	0			REV__ENSG00000198888|ENST00000361390|MT-ND1	REV__ENSG00000198888|ENST00000361390|MT-ND1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8003234863281	2	485.782025	969.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.972	1	78.03	77.53	78.53	0.058151								0	0	0	0.20238	1	20142	20142		21.747	0.20967	1		+		45275	18884	26142	26143	54963	54963					0.06350340586004677
STAPKLPEK	9	Unmodified	_STAPKLPEK_					0	0	0			REV__ENSG00000198888|ENST00000361390|MT-ND1	REV__ENSG00000198888|ENST00000361390|MT-ND1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8000793457031	2	485.782025	969.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.153	1	78.211	77.711	78.711	0.058151								0	0	0	0.20639	1	20196	20196		20.454	0	1		+		45276	18884	26142	26143	54964	54964					0.06350340586004677
STAPKLPEK	9	Unmodified	_STAPKLPEK_					0	0	0			REV__ENSG00000198888|ENST00000361390|MT-ND1	REV__ENSG00000198888|ENST00000361390|MT-ND1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002624511719	2	485.782025	969.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.475	1	78.533	78.033	79.033	0.058151								0	0	0	0.20639	1	20295	20295		20.454	0	1		+		45277	18884	26142	26143	54965	54965					0.06350340586004677
STAPKLPEK	9	Unmodified	_STAPKLPEK_					0	0	0			REV__ENSG00000198888|ENST00000361390|MT-ND1	REV__ENSG00000198888|ENST00000361390|MT-ND1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80035400390625	2	485.782025	969.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.786	1	78.844	78.344	79.344	0.058151								0	0	0	0.20238	1	20390	20390		21.747	0.20967	1		+		45278	18884	26142	26143	54966	54966					0.06350340586004677
STAPKLPEK	9	Unmodified	_STAPKLPEK_					0	0	0			REV__ENSG00000198888|ENST00000361390|MT-ND1	REV__ENSG00000198888|ENST00000361390|MT-ND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2492980957031	2	485.782025	969.549496	0.27464	0.00013342	-0.02839	-1.3791E-05	0.24625	0.00011963	485.7820352063565	70.347	0.64451	70.408	70.155	70.8	0.060783					37	22	2	0	0	0	0.20651	1	17772	17772		20.454	5.6154	1	396940	+		45279	18884	26142	26143	54967	54967					0.06350340586004677
STAPKLPEK	9	Unmodified	_STAPKLPEK_					0	0	0			REV__ENSG00000198888|ENST00000361390|MT-ND1	REV__ENSG00000198888|ENST00000361390|MT-ND1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80029296875	2	485.782025	969.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.067	1	78.037	77.537	78.537	-0.030434								0	0	0	0.20238	1	20164	20164		21.747	1.293	1		+		45280	18884	26142	26143	54968	54968					0.06350340586004677
STAPKLPEK	9	Unmodified	_STAPKLPEK_					0	0	0			REV__ENSG00000198888|ENST00000361390|MT-ND1	REV__ENSG00000198888|ENST00000361390|MT-ND1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003845214844	2	485.782025	969.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.893	1	78.863	78.363	79.363	-0.030434								0	0	0	0.20238	1	20416	20416		21.747	1.293	1		+		45281	18884	26142	26143	54969	54969					0.06350340586004677
STAPKLPEK	9	Unmodified	_STAPKLPEK_					0	0	0			REV__ENSG00000198888|ENST00000361390|MT-ND1	REV__ENSG00000198888|ENST00000361390|MT-ND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.24932861328125	2	485.782025	969.549496	0.34059	0.00016545	-0.24153	-0.00011733	0.099062	4.8123E-05	485.7819905734161	70.46	0.53139	70.436	70.134	70.666	-0.024864					30	18	2	0	0	0	0.20651	1	17793	17793		20.454	0	1	333380	+		45282	18884	26142	26143	54970	54970					0.06350340586004677
STAPQEVLTGK	11	Unmodified	_STAPQEVLTGK_					0	0	0		nc|ENSG00000184343|Q9UPE1-2|SRPK3;nc|ENSG00000184343|Q9UPE1-3|SRPK3;nc|ENSG00000184343|Q9UPE1-4|SRPK3	nc|ENSG00000184343|Q9UPE1-2|SRPK3	nc|ENSG00000184343|Q9UPE1-2|SRPK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.8158569335938	2	565.806228	1129.5979	0.013705	7.7541E-06	-0.42036	-0.00023784	-0.40665	-0.00023009	566.3059495555298	46.395	0.92813	46.395	45.832	46.76	0					88	33	4	0	0	0	0.24987	1	10327	10327		33.445	4.3633	1	1926300			45283	12875	26143	26144	54971	54971					0.038287894352379226
STAQRVTYK	9	Unmodified	_STAQRVTYK_					0	0	0		nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2879638671875	2	527.288005	1052.56146	0.19643	0.00010357	-0.028039	-1.4785E-05	0.16839	8.879E-05	527.2880110225557	14.317	0.34045	14.317	14.164	14.505	0					27	11	3	0	0	0	0.043673	1	695	695		55.249	36.876	1	330400			45284	3263	26144	26145	54972	54972					0.03727957329192577
STAQRVTYK	9	Unmodified	_STAQRVTYK_					0	0	0		nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2877807617188	2	527.288005	1052.56146	0.13783	7.2678E-05	-0.08042	-4.2405E-05	0.057413	3.0273E-05	527.2878916390099	14.471	0.4064	14.367	14.185	14.592	-0.10466					37	13	4	0	0	0	0.027957	1	730	730		61.09	40.636	1	271090			45285	3263	26144	26145	54973	54973					0.03727957329192577
STAQRVTYK	9	Unmodified	_STAQRVTYK_					0	0	0		nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2880249023438	2	527.288005	1052.56146	0.16976	8.9511E-05	0.067429	3.5555E-05	0.23719	0.00012507	527.2880310292595	14.473	0.4098	14.407	14.206	14.616	-0.066068					35	14	3	0	0	0	0.018042	1	732	732		67.081	45.544	1	285110			45286	3263	26144	26145	54974	54974					0.03727957329192577
STARADYFAQK	11	Unmodified	_STARADYFAQK_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.91998291015625	3	419.878926	1256.61495	0.037559	1.577E-05	-1.0109	-0.00042445	-0.97332	-0.00040868	419.8784193813609	24.066	0.59447	23.994	23.672	24.267	-0.072559					38	19	3	0	0	0	0.33056	1	3632	3632		8.7518	4.0359	1	144510			45287	2882	26145	26146	54975	54975					-0.0030928995897738787
STARHLYLR	9	Unmodified	_STARHLYLR_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.8170776367188	2	558.817264	1115.61998	0.083249	4.6521E-05	-0.3307	-0.0001848	-0.24745	-0.00013828	558.8170102515857	19.183	0.65692	19.183	18.864	19.521	0					72	22	4	0	0	0	0.0042138	2	2154	2109;2154		92.653	54.679	1	1027300			45288	1972	26146	26147	54976;54977	54977					0.06679058694317064
STARHLYLR	9	Unmodified	_STARHLYLR_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.817138671875	2	558.817264	1115.61998	0.15797	8.8278E-05	-0.42802	-0.00023919	-0.27005	-0.00015091	558.8169798579886	19.299	0.58338	19.243	18.961	19.544	-0.055693					68	19	4	0	0	0	0.0028626	2	2198	2156;2198		103.35	57.333	1	946940			45289	1972	26146	26147	54978;54979	54979					0.06679058694317064
STARHLYLR	9	Unmodified	_STARHLYLR_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	558.817264	1115.61998	0.23485	0.00013124	-0.38981	-0.00021783	-0.15495	-8.6591E-05	558.8170065297279	19.377	0.6315	19.261	18.947	19.579	-0.11592	0.031769	-1.3423E-05	NaN	103.35	70	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	989890			45290	1972	26146	26147							0.06679058694317064
STARLWDHKK	10	Unmodified	_STARLWDHKK_					0	0	0		ENST00000529974.1_1_11:88068229-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	ENST00000529974.1_1_11:88068229-88070878:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.56292724609375	3	414.563161	1240.66765	-0.2521	-0.00010451	0.12118	5.0237E-05	-0.13092	-5.4275E-05	414.5633656417825	15.666	0.77087	15.666	15.413	16.184	0					62	26	4	0	0	0	0.22753	1	1086	1086		29.281	10.137	1	411010			45291	11610	26147	26148	54980	54980					0.05694712894501208
STARPYYVS	9	Unmodified	_STARPYYVS_					0	0	0		nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8187866210938	2	522.261456	1042.50836	0.43262	0.00022594	0.26805	0.00013999	0.70066	0.00036593	522.2615000156308	39.67	0.49626	39.762	39.497	39.994	0.09267					33	17	3	0	0	0	0.22596	1	8377	8377		21.747	1.3321	1	293760			45292	4100	26148	26149	54981	54981					-0.011194204534831442
STARVLVPQ	9	Unmodified	_STARVLVPQ_					0	0	0			REV__ENSG00000099875|ENST00000250896|MKNK2	REV__ENSG00000099875|ENST00000250896|MKNK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80035400390625	2	485.787641	969.56073	0.44554	0.00021644	2.0102	0.00097651	2.4557	0.0011929	485.7885169503616	50.346	0.40803	50.346	50.025	50.433	0					33	14	4	0	0	0	0.12846	1	11686	11686		34.102	3.4659	1	226710	+		45293	14140	26149	26150	54982	54982					0.07473162680139467
STARVLVPQ	9	Unmodified	_STARVLVPQ_					0	0	0			REV__ENSG00000099875|ENST00000250896|MKNK2	REV__ENSG00000099875|ENST00000250896|MKNK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.800537109375	2	485.787641	969.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.91	1	50.957	50.457	51.457	0.046574								0	0	0	0.20238	1	11840	11840		21.747	3.6003	1		+		45294	14140	26149	26150	54983	54983					0.07473162680139467
STARVLVPQ	9	Unmodified	_STARVLVPQ_					0	0	0			REV__ENSG00000099875|ENST00000250896|MKNK2	REV__ENSG00000099875|ENST00000250896|MKNK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7998046875	2	485.787641	969.56073	0.17697	8.5972E-05	0.38667	0.00018784	0.56364	0.00027381	485.7876906742752	46.513	0.99739	46.568	45.83	46.827	0.054371					60	35	2	0	0	0	0.21303	1	10514	10514		21.747	0	1	537040	+		45295	14140	26149	26150	54984	54984					0.07473162680139467
STASLWFA	8	Unmodified	_STASLWFA_					0	0	0			REV__ENST00000221566.6_1_19:2755847-2755904:-|nuORF	REV__ENST00000221566.6_1_19:2755847-2755904:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.72174072265625	2	441.721436	881.428318	0.14133	6.243E-05	-0.25593	-0.00011305	-0.1146	-5.0621E-05	441.7212849891898	91.039	0.84064	91.129	90.879	91.72	0.090668					90	63	2	0	0	0	0.45942	2	24181	24181;24195		2.5775	0	1	1243700	+		45296	19429	26150	26151	54985;54986	54985					-0.017138620566697682
STASLWFA	8	Unmodified	_STASLWFA_					0	0	0			REV__ENST00000221566.6_1_19:2755847-2755904:-|nuORF	REV__ENST00000221566.6_1_19:2755847-2755904:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7213439941406	2	441.721436	881.428318	0.33761	0.00014913	-0.49156	-0.00021713	-0.15396	-6.8007E-05	441.7211562487365	91.15	0.62205	91.151	90.859	91.481	0.00047302					76	41	2	0	0	0	0.45942	1	24243	24243		2.5775	0	1	1178700	+		45297	19429	26150	26151	54987	54987					-0.017138620566697682
STAWIPLAL	9	Unmodified	_STAWIPLAL_					0	0	0		ENST00000396595.7_1_4:41615083-41615657:+|nuORF	ENST00000396595.7_1_4:41615083-41615657:+|nuORF	ENST00000396595.7_1_4:41615083-41615657:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003845214844	2	486.28166	970.548768	0.54322	0.00026416	-0.2866	-0.00013937	0.25662	0.00012479	486.2815617998821	79.098	0.64983	79.069	78.845	79.495	-0.028931					41	27	2	0	0	0	0.24913	1	20416	20416		12.532	12.532	1	188450			45298	10121	26151	26152	54988	54988					0.06231545936930161
STAWIPLAL	9	Unmodified	_STAWIPLAL_					0	0	0		ENST00000396595.7_1_4:41615083-41615657:+|nuORF	ENST00000396595.7_1_4:41615083-41615657:+|nuORF	ENST00000396595.7_1_4:41615083-41615657:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	486.28166	970.548768	0.44367	0.00021575	-0.51981	-0.00025277	-0.076135	-3.7023E-05	486.2812478876999	79.1	0.48215	79.1	78.906	79.388	0	0.02476	-0.00010046	NaN	12.532	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89090			45299	10121	26151	26152							0.06231545936930161
STAWIPLAL	9	Unmodified	_STAWIPLAL_					0	0	0		ENST00000396595.7_1_4:41615083-41615657:+|nuORF	ENST00000396595.7_1_4:41615083-41615657:+|nuORF	ENST00000396595.7_1_4:41615083-41615657:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	486.28166	970.548768	0.4186	0.00020356	-0.44252	-0.00021519	-0.023912	-1.1628E-05	486.2813342080633	78.997	0.41769	79.056	78.893	79.311	0.058151	-0.01935	-2.5286E-05	NaN	12.532	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151090			45300	10121	26151	26152							0.06231545936930161
STCEGAKCWK	10	Unmodified	_STCEGAKCWK_					0	0	0			REV__nc|ENSG00000145808|Q8TE59|ADAMTS19	REV__nc|ENSG00000145808|Q8TE59|ADAMTS19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7467651367188	2	556.746802	1111.47905	0.024314	1.3537E-05	-0.40309	-0.00022442	-0.37878	-0.00021088	556.7467959853823	15.163	1.0734	15.163	14.819	15.892	0					104	37	5	0	0	0	0.24105	1	963	963		27.629	7.1752	1	910350	+		45301	16309	26152	26153	54989	54989					-0.07223024065638128
STCEGAKCWK	10	Unmodified	_STCEGAKCWK_					0	0	0			REV__nc|ENSG00000145808|Q8TE59|ADAMTS19	REV__nc|ENSG00000145808|Q8TE59|ADAMTS19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.746826171875	2	556.746802	1111.47905	0.11257	6.2671E-05	-0.59328	-0.00033031	-0.48071	-0.00026764	556.7467535852754	15.303	1.0811	15.193	14.818	15.899	-0.10981					94	37	5	0	0	0	0.29092	1	998	998		21.537	5.3879	1	771700	+		45302	16309	26152	26153	54990	54990					-0.07223024065638128
STCEGAKCWK	10	Unmodified	_STCEGAKCWK_					0	0	0			REV__nc|ENSG00000145808|Q8TE59|ADAMTS19	REV__nc|ENSG00000145808|Q8TE59|ADAMTS19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7467651367188	2	556.746802	1111.47905	-0.028626	-1.5937E-05	-0.35298	-0.00019652	-0.38161	-0.00021246	556.7468292139808	15.329	0.93482	15.264	14.955	15.89	-0.064413					84	31	5	0	0	0	0.24105	1	1028	1028		27.629	7.1752	1	1046800	+		45303	16309	26152	26153	54991	54991					-0.07223024065638128
STCEGAKCWK	10	Unmodified	_STCEGAKCWK_					0	0	0			REV__nc|ENSG00000145808|Q8TE59|ADAMTS19	REV__nc|ENSG00000145808|Q8TE59|ADAMTS19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3172607421875	2	556.746802	1111.47905	-0.028626	-1.5937E-05	-0.35298	-0.00019652	-0.38161	-0.00021246	556.7468292139808	15.329	0.93482	15.264	14.955	15.89	-0.064413					84	31	5	0	0	0	0.27979	1	1004	1004		27.629	7.1752	1	1046800	+		45304	16309	26152	26153	54992	54992					-0.07223024065638128
STCEQIKDK	9	Unmodified	_STCEQIKDK_					0	0	0		CNOT11|p.R492Lfs*14|1|0.04|ENSG00000158435|chr2:101269354-101269355|-/T|frameshift_variant;CNOT11|p.L493Qfs*15|1|0.04|ENSG00000158435|chr2:101269356-101269357|-/CAGCCAT|frameshift_variant;ENSG00000158435|ENST00000289382|CNOT11	CNOT11|p.R492Lfs*14|1|0.04|ENSG00000158435|chr2:101269354-101269355|-/T|frameshift_variant	CNOT11|p.R492Lfs*14|1|0.04|ENSG00000158435|chr2:101269354-101269355|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2587890625	2	526.258056	1050.50156	0.48837	0.00025701	-0.74586	-0.00039251	-0.25748	-0.0001355	526.2576811453621	17.168	0.66731	17.168	16.81	17.477	0					35	23	2	0	0	0	0.3208	1	1573	1573		5.7319	0.83484	1	65530			45305	189	26153	26154	54993	54993					-0.021671013963668884
STCGHFWQND	10	Unmodified	_STCGHFWQND_					0	0	0			REV__ENSG00000011028|ENST00000303375|MRC2	REV__ENSG00000011028|ENST00000303375|MRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.735595703125	2	597.73528	1193.45601	0.46735	0.00027935	0.32067	0.00019167	0.78802	0.00047103	597.7353736753978	53.204	0.69061	53.195	52.92	53.611	-0.0096054					48	25	2	0	0	0	0.37454	1	12551	12551		8.1555	3.8263	1	2587400	+		45306	13423	26154	26155	54994	54994					-0.1329832685873953
STCMYGSSL	9	Unmodified	_STCMYGSSL_					0	0	0			REV__chr10:89462624-89506310|321|10.73|0.6|4.16|-|2|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|1	REV__chr10:89462624-89506310|321|10.73|0.6|4.16|-|2|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.69366455078125	2	474.693703	947.372854	0.040065	1.9019E-05	-0.23534	-0.00011171	-0.19527	-9.2695E-05	474.693574601398	40.878	0.59201	40.977	40.724	41.316	0.099022					33	21	2	0	0	0	0.079066	1	8746	8746		42.095	0	1	468160	+		45307	13167	26155	26156	54995	54995					-0.10293779630956124
STDFLSHPF	9	Unmodified	_STDFLSHPF_					0	0	0		nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;LRP8|p.L926Pfs*37|1|0.1|ENSG00000157193|chr1:53249457-53249458|-/AGAAGAAAAATGG|frameshift_variant;ENSG00000157193|ENST00000306052|LRP8;nc|ENSG00000157193|Q14114-2|LRP8;ENST00000460214.5_1_1:53723708-53728160:-|nuORF	nc|ENSG00000157193|Q14114-4|LRP8	nc|ENSG00000157193|Q14114-4|LRP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3618774414062	2	525.748182	1049.48181	0.42853	0.0002253	2.0388	0.0010719	2.4673	0.0012972	525.7495691579398	32.959	0.30776	32.959	32.895	33.202	0					12	10	2	0	0	0	0.25938	1	6382	6382		4.3292	0	1	72235			45308	5288	26156	26157	54996	54996					-0.04095109344825687
STDGAKVFSK	10	Unmodified	_STDGAKVFSK_					0	0	0		nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54	nc|ENSG00000100883|P61011-2|SRP54	nc|ENSG00000100883|P61011-2|SRP54	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.806396484375	2	520.274564	1038.53457	0.1732	9.0111E-05	-0.11261	-5.8587E-05	0.060592	3.1524E-05	520.2743847094283	17.832	0.63516	17.715	17.515	18.151	-0.11739					49	21	4	0	0	0	0.31538	1	1803	1803		12.873	4.1272	1	211070			45309	1639	26157	26158	54997	54997					0.016848487180141092
STDKSSRRRKF	11	Unmodified	_STDKSSRRRKF_					0	0	0			REV__ENSG00000176884|ENST00000371561|GRIN1	REV__ENSG00000176884|ENST00000371561|GRIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2769470214844	3	456.588258	1366.74294	-0.1266	-5.7803E-05	2.5062	0.0011443	2.3796	0.0010865	456.5891147448289	42.584	0.38069	42.584	42.435	42.816	0					24	13	2	0	0	0	0.33122	1	9256	9256		4.4062	0	1	279080	+		45310	17954	26158	26159	54998	54998					0.0742427035493165
STDLFVTTR	9	Unmodified	_STDLFVTTR_					0	0	0			REV__nc|ENSG00000188992|Q6XZB0-8|LIPI	REV__nc|ENSG00000188992|Q6XZB0-8|LIPI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.8064575195312	2	520.274564	1038.53457	0.35391	0.00018413	-0.23633	-0.00012296	0.11758	6.1171E-05	520.2743854345917	17.709	0.51407	17.709	17.477	17.991	0					45	16	3	0	0	0	0.25527	1	1758	1758		8.7454	3.4485	1	189650	+		45311	18588	26159	26160	54999	54999					0.016848487179913718
STDLFVTTR	9	Unmodified	_STDLFVTTR_					0	0	0			REV__nc|ENSG00000188992|Q6XZB0-8|LIPI	REV__nc|ENSG00000188992|Q6XZB0-8|LIPI	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	520.274564	1038.53457	0.20966	0.00010908	-0.22544	-0.00011729	-0.01578	-8.21E-06	520.2744029838507	17.844	0.75093	17.784	17.502	18.253	-0.060431	0.047953	-3.3321E-05	NaN	8.7454	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227780	+		45312	18588	26159	26160							0.016848487179913718
STDLSELSK	9	Unmodified	_STDLSELSK_					0	0	0			REV__ENSG00000183431|ENST00000373019|SF3A3	REV__ENSG00000183431|ENST00000373019|SF3A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.26708984375	2	490.250754	978.486955	0.44354	0.00021744	-0.14245	-6.9837E-05	0.30108	0.00014761	490.25078819854923	26.848	0.56523	26.837	26.595	27.16	-0.01156					49	19	3	0	0	0	0.30064	1	4439	4439		8.7454	2.0222	1	288410	+		45313	18261	26160	26161	55000	55000					-0.003148502728436142
STDPAAPNLK	10	Unmodified	_STDPAAPNLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2666320800781	2	507.266739	1012.51892	0.23413	0.00011876	-0.094412	-4.7892E-05	0.13971	7.0873E-05	507.2664157211724	26.744	0.90063	26.744	26.271	27.172	0					60	31	3	0	0	0	0.048379	1	4459	4459		59.368	33.969	1	354430			45314	4024	26161	26162	55001	55001					0.013165622009410072
STDPAAPNLK	10	Unmodified	_STDPAAPNLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2664794921875	2	507.266739	1012.51892	0.2408	0.00012215	-0.21096	-0.00010701	0.029845	1.5139E-05	507.26649616658864	26.727	0.82786	26.689	26.342	27.17	-0.038671					59	28	4	0	0	0	0.13784	1	4493	4493		40.239	18.702	1	376360			45315	4024	26161	26162	55002	55002					0.013165622009410072
STDPAAPNLK	10	Unmodified	_STDPAAPNLK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2665100097656	2	507.266739	1012.51892	0.45328	0.00022993	-0.59256	-0.00030058	-0.13928	-7.0651E-05	507.2663377490104	26.721	0.61973	26.703	26.507	27.126	-0.01755					47	21	3	0	0	0	0.11334	1	4443	4443		70.332	37.546	1	372520			45316	4024	26161	26162	55003	55003					0.013165622009410072
STDPSVLGK	9	Unmodified	_STDPSVLGK_					0	0	0		ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	ENSG00000114315|ENST00000232424|HES1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.91278076171875	2	452.242732	902.470912	-0.17934	-8.1105E-05	-3.6637	-0.0016569	-3.843	-0.001738	452.24106262887653	25.505	0.68242	25.474	24.833	25.515	-0.031408					34	23	2	0	0	0	0.22061	1	4048	4048		24.021	7.0783	1	263580			45317	2554	26162	26163	55004	55004					0.0157748828091826
STDPVAYKTGP	11	Unmodified	_STDPVAYKTGP_					0	0	0			REV__ENST00000489437.1_1_3:50144918-50148299:+|nuORF	REV__ENST00000489437.1_1_3:50144918-50148299:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2860107421875	2	568.285128	1134.5557	0.28865	0.00016404	1.1594	0.00065885	1.448	0.00082289	568.2857763661193	31.859	0.6214	31.9	31.672	32.293	0.040991					40	21	2	0	0	0	0.2056	1	6007	6007		30.703	3.4802	1	811750	+		45318	13326	26163	26164	55005	55005					-0.00619185973164349
STDQASAIKTK	11	Unmodified	_STDQASAIKTK_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3087158203125	2	575.309135	1148.60372	-0.10867	-6.2521E-05	-0.027981	-1.6098E-05	-0.13666	-7.8619E-05	575.3089704863471	14.119	0.2891	14.053	13.917	14.206	-0.066068					15	9	2	0	0	0	0.42863	1	626	626		7.4771	0.7539	1	148000			45319	3321	26164	26165	55006	55006					0.03535887946895855
STDQPLQTFV	10	Unmodified	_STDQPLQTFV_					0	0	0			REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2863159179688	2	568.285128	1134.5557	0.48757	0.00027708	0.95389	0.00054208	1.4415	0.00081916	568.2856837267332	31.87	0.67886	31.913	31.652	32.331	0.042366					38	23	2	0	0	0	0.27248	1	6016	6016		23.79	1.1317	1	908960	+		45320	16389	26165	26166	55007	55007					-0.00619185973164349
STDQPLQTFV	10	Unmodified	_STDQPLQTFV_					0	0	0			REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.754638671875	2	568.285128	1134.5557	0.48757	0.00027708	0.95389	0.00054208	1.4415	0.00081916	568.2856837267332	31.87	0.67886	31.913	31.652	32.331	0.042366					38	23	2	0	0	0	0.31473	1	5947	5947		13.615	0.74226	1	908960	+		45321	16389	26165	26166	55008	55008					-0.00619185973164349
STDQPLQTFV	10	Unmodified	_STDQPLQTFV_					0	0	0			REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2864990234375	2	568.285128	1134.5557	0.28865	0.00016404	1.1594	0.00065885	1.448	0.00082289	568.2857763661193	31.859	0.6214	31.9	31.672	32.293	0.040991					40	21	2	0	0	0	0.27248	1	6059	6059		23.79	3.2088	1	811750	+		45322	16389	26165	26166	55009	55009					-0.00619185973164349
STDTGKHIK	9	Unmodified	_STDTGKHIK_					0	0	0		ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A	ENSG00000134910|ENST00000392708|STT3A	ENSG00000134910|ENST00000392708|STT3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7796630859375	2	493.766906	985.519259	0.30887	0.00015251	0.062952	3.1083E-05	0.37182	0.00018359	493.7671854293058	32.959	0.46699	33.013	32.791	33.258	0.054375					36	16	3	0	0	0	0.25526	1	6284	6284		7.9102	3.5809	1	375370			45323	3830	26166	26167	55010	55010					0.02591981920818398
STDWFRTTSWA	11	Unmodified	_STDWFRTTSWA_					0	0	0			REV__ENST00000470369.1_1_11:2320857-2321980:-|nuORF	REV__ENST00000470369.1_1_11:2320857-2321980:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.9127502441406	3	453.210565	1356.60986	0.045144	2.046E-05	-2.9411	-0.0013329	-2.8959	-0.0013125	453.54363474628417	25.458	0.29554	25.458	25.328	25.623	0					12	9	2	0	0	0	0.3322	1	4054	4054		4.7159	2.0847	1	46735	+		45324	21169	26167	26168	55011	55011					-0.0541759382156215
STDYKKLKK	9	Unmodified	_STDYKKLKK_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF;chr12:57235609-57235749|292|950.43|0.57|10.7|-|2|None,NDUFA4L2|2	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8289794921875	2	555.829506	1109.64446	-0.032551	-1.8093E-05	-1.042	-0.00057919	-1.0746	-0.00059728	555.8292689237283	12.811	0.53137	12.811	12.669	13.2	0					66	18	5	0	0	0	0.064268	1	228	228		47.594	21.326	1	515540			45325	7545	26168	26169	55012	55012					0.09402274057174509
STDYKKLKK	9	Unmodified	_STDYKKLKK_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF;chr12:57235609-57235749|292|950.43|0.57|10.7|-|2|None,NDUFA4L2|2	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8292236328125	2	555.829506	1109.64446	0.0060502	3.3629E-06	-0.88215	-0.00049032	-0.8761	-0.00048696	555.8292582569543	12.852	0.51938	12.753	12.578	13.097	-0.099291					60	17	4	0	0	0	0.015924	1	244	244		70.332	24.632	1	497910			45326	7545	26168	26169	55013	55013					0.09402274057174509
STDYKKLKK	9	Unmodified	_STDYKKLKK_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF;chr12:57235609-57235749|292|950.43|0.57|10.7|-|2|None,NDUFA4L2|2	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8292846679688	2	555.829506	1109.64446	-0.17205	-9.5629E-05	-0.82728	-0.00045983	-0.99933	-0.00055546	555.8293001623834	12.855	0.46144	12.787	12.64	13.102	-0.067496					56	15	5	0	0	0	0.015924	1	243	243		70.332	30.382	1	553400			45327	7545	26168	26169	55014	55014					0.09402274057174509
STEFLALMK	9	Oxidation (M)	_STEFLALM(Oxidation (M))K_		STEFLALM(1)K		STEFLALM(160)K	0	0	1		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2757568359375	2	528.275718	1054.53688	0.30451	0.00016086	-0.24895	-0.00013151	0.055561	2.9351E-05	528.2753819801748	46.458	0.758	46.458	46.055	46.813	0					71	27	3	0	0	0	1.2283E-05	3	10530	10427;10478;10530		155.03	100.25	1	4055300			45328	276	26169	26170	55015;55016;55017	55017		19			0.011795611314255439
STEFLALMK	9	Oxidation (M)	_STEFLALM(Oxidation (M))K_		STEFLALM(1)K		STEFLALM(170)K	0	0	1		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2755126953125	2	528.275718	1054.53688	0.40767	0.00021536	-0.25193	-0.00013309	0.15573	8.227E-05	528.27537390502	46.339	0.84407	46.399	45.9	46.745	0.059837					80	30	3	0	0	0	2.942E-07	3	10439	10383;10439;10490		168.66	109.98	1	3858300			45329	276	26169	26170	55018;55019;55020	55019		19			0.011795611314255439
STEFLALMK	9	Oxidation (M)	_STEFLALM(Oxidation (M))K_		STEFLALM(1)K		STEFLALM(160)K	0	0	1		DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	DYNC1H1|p.E4304Sfs*36|1|0.13|ENSG00000197102|chr14:102044601-102044601|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2758178710938	2	528.275718	1054.53688	0.35108	0.00018547	-0.083504	-4.4113E-05	0.26757	0.00014135	528.2753899372485	46.348	0.93486	46.402	45.861	46.796	0.054371					96	33	4	0	0	0	1.2283E-05	4	10428	10379;10428;10479;10534		155.03	98.713	1	4137600			45330	276	26169	26170	55021;55022;55023;55024	55022		19			0.011795611314255439
STEGLAWVST	10	Unmodified	_STEGLAWVST_					0	0	0		ENST00000166139.8_1_19:682089-682434:+|nuORF	ENST00000166139.8_1_19:682089-682434:+|nuORF	ENST00000166139.8_1_19:682089-682434:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7589111328125	2	525.758746	1049.50294	0.38932	0.00020469	-0.050667	-2.6638E-05	0.33866	0.00017805	525.758712450045	19.554	2.1427	19.554	18.71	20.853	0					175	77	4	0	0	0	0.080806	3	2257	2257;2306;2347		52.268	8.4101	1	2208600			45331	8784	26170	26171	55025;55026;55027	55025					-0.01983144035943951
STEGLAWVST	10	Unmodified	_STEGLAWVST_					0	0	0		ENST00000166139.8_1_19:682089-682434:+|nuORF	ENST00000166139.8_1_19:682089-682434:+|nuORF	ENST00000166139.8_1_19:682089-682434:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7589721679688	2	525.758746	1049.50294	0.4998	0.00026277	-0.16976	-8.9255E-05	0.33003	0.00017352	525.7586768252038	19.76	2.0681	19.644	18.762	20.83	-0.11592					211	73	6	0	0	0	0.15638	3	2365	2365;2406;2451		37.974	5.6685	1	2550200			45332	8784	26170	26171	55028;55029;55030	55028					-0.01983144035943951
STEGLAWVST	10	Unmodified	_STEGLAWVST_					0	0	0		ENST00000166139.8_1_19:682089-682434:+|nuORF	ENST00000166139.8_1_19:682089-682434:+|nuORF	ENST00000166139.8_1_19:682089-682434:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7589721679688	2	525.758746	1049.50294	0.60796	0.00031964	-0.27247	-0.00014326	0.33549	0.00017639	525.7586050180925	19.697	1.9523	19.641	18.931	20.883	-0.055693					194	69	5	0	0	0	0.15638	2	2335	2335;2380		37.974	5.6685	1	2513500			45333	8784	26170	26171	55031;55032	55031					-0.01983144035943951
STEIPPYVMK	10	Oxidation (M)	_STEIPPYVM(Oxidation (M))K_		STEIPPYVM(1)K		STEIPPYVM(50)K	0	0	1		ENST00000560910.5_1_15:102186874-102192564:-|nuORF;ENST00000559024.5_1_15:102186874-102192564:-|nuORF;nc|ENSG00000184277|Q9BRN9-2|TM2D3;ENSG00000184277|ENST00000333202|TM2D3	ENST00000560910.5_1_15:102186874-102192564:-|nuORF	ENST00000560910.5_1_15:102186874-102192564:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.7997436523438	2	590.799557	1179.58456	0.40251	0.0002378	-0.10387	-6.1365E-05	0.29864	0.00017644	590.7994630507353	38.457	1.1825	38.548	38.042	39.225	0.090881					100	42	3	0	0	0	0.093201	2	8060	8060;8109		49.554	32.441	1	385560			45334	7443	26171	26172	55033;55034	55033		824			0.001952153316096883
STEIPPYVMK	10	Oxidation (M)	_STEIPPYVM(Oxidation (M))K_		STEIPPYVM(1)K		STEIPPYVM(42)K	0	0	1		ENST00000560910.5_1_15:102186874-102192564:-|nuORF;ENST00000559024.5_1_15:102186874-102192564:-|nuORF;nc|ENSG00000184277|Q9BRN9-2|TM2D3;ENSG00000184277|ENST00000333202|TM2D3	ENST00000560910.5_1_15:102186874-102192564:-|nuORF	ENST00000560910.5_1_15:102186874-102192564:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.7994384765625	2	590.799557	1179.58456	0.4539	0.00026817	0.0055587	3.2841E-06	0.45946	0.00027145	590.7994581634282	38.468	1.1461	38.566	38.007	39.153	0.097527					87	40	3	0	0	0	0.12791	2	7970	7970;8092		41.956	24.843	1	356190			45335	7443	26171	26172	55035;55036	55035		824			0.001952153316096883
STEISSAEK	9	Unmodified	_STEISSAEK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.2347412109375	2	476.235104	950.455655	0.038392	1.8284E-05	-0.061218	-2.9154E-05	-0.022826	-1.0871E-05	476.23497448231603	15.194	0.8175	15.084	14.905	15.723	-0.10981					44	28	3	0	0	0	0.037019	1	951	951		57.722	1.5449	1	181590			45336	638	26172	26173	55037	55037					-0.02155423306942339
STEISSAEK	9	Unmodified	_STEISSAEK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.2347106933594	2	476.235104	950.455655	-0.036156	-1.7219E-05	0.10884	5.1834E-05	0.072686	3.4616E-05	476.23518316618834	15.211	0.79567	15.147	14.984	15.779	-0.064414					48	26	3	0	0	0	0.038291	1	964	964		57.249	3.4163	1	205770			45337	638	26172	26173	55038	55038					-0.02155423306942339
STEISSAEK	9	Unmodified	_STEISSAEK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	476.235104	950.455655	-0.1401	-6.6721E-05	0.22824	0.00010869	0.088135	4.1973E-05	476.23510157469804	15.077	0.83435	15.077	14.9	15.734	0	-0.02573	0.00016017	NaN	57.722	40	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156790			45338	638	26172	26173							-0.02155423306942339
STEKTAISTL	10	Unmodified	_STEKTAISTL_					0	0	0		nc|ENSG00000178852|Q8IY85-2|EFCAB13;ENSG00000178852|ENST00000331493|EFCAB13;ENST00000520776.5_1_17:45405719-45473360:+|nuORF	nc|ENSG00000178852|Q8IY85-2|EFCAB13	nc|ENSG00000178852|Q8IY85-2|EFCAB13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7591552734375	2	525.787504	1049.56045	0.47409	0.00024927	1.7132	0.00090078	2.1873	0.0011501	525.7886393737523	19.503	0.14721	19.448	19.337	19.485	-0.055693					6	4	2	0	0	0	0.31691	1	2238	2238		9.3831	1.473	1	15093			45339	7079	26173	26174	55039	55039					0.03765698169604548
STENWLSTI	9	Unmodified	_STENWLSTI_					0	0	0		ENST00000398632.3_1_21:42775383-42780157:+|nuORF	ENST00000398632.3_1_21:42775383-42780157:+|nuORF	ENST00000398632.3_1_21:42775383-42780157:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7589111328125	2	525.758746	1049.50294	0.4998	0.00026277	-0.16976	-8.9255E-05	0.33003	0.00017352	525.7586768252038	19.76	2.0681	19.644	18.762	20.83	-0.11592					211	73	6	0	0	0	0.11461	1	2320	2320		36.127	0	1	2550200			45340	10167	26174	26175	55040	55040					-0.01983144035943951
STENWLSTI	9	Unmodified	_STENWLSTI_					0	0	0		ENST00000398632.3_1_21:42775383-42780157:+|nuORF	ENST00000398632.3_1_21:42775383-42780157:+|nuORF	ENST00000398632.3_1_21:42775383-42780157:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7589111328125	2	525.758746	1049.50294	0.60796	0.00031964	-0.27247	-0.00014326	0.33549	0.00017639	525.7586050180925	19.697	1.9523	19.641	18.931	20.883	-0.055693					194	69	5	0	0	0	0.07432	1	2287	2287		43.858	0	1	2513500			45341	10167	26174	26175	55041	55041					-0.01983144035943951
STEPIYVYK	9	Unmodified	_STEPIYVYK_					0	0	0		nc|ENSG00000179889|Q6P996-3|PDXDC1;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;PDXDC1|p.Q682R|1|0.15|ENSG00000179889|chr16:15035491-15035491|A/G|missense_variant	nc|ENSG00000179889|Q6P996-3|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.26904296875	2	550.28714	1098.55973	0.051601	2.8396E-05	0.29436	0.00016198	0.34596	0.00019038	550.2872534289394	39.423	0.83324	39.423	39.135	39.968	0					71	30	3	0	0	0	0.074552	2	8284	8284;8319		43.772	21.386	1	619750			45342	7150	26175	26176	55042;55043	55042					0.01438903520556778
STEPIYVYK	9	Unmodified	_STEPIYVYK_					0	0	0		nc|ENSG00000179889|Q6P996-3|PDXDC1;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;PDXDC1|p.Q682R|1|0.15|ENSG00000179889|chr16:15035491-15035491|A/G|missense_variant	nc|ENSG00000179889|Q6P996-3|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.287353515625	2	550.28714	1098.55973	0.29609	0.00016294	0.17812	9.8016E-05	0.47421	0.00026095	550.2872754476846	39.29	0.7242	39.382	39.105	39.83	0.09267					54	25	3	0	0	0	0.023967	1	8278	8278		62.573	37.173	1	771670			45343	7150	26175	26176	55044	55044					0.01438903520556778
STEPIYVYK	9	Unmodified	_STEPIYVYK_					0	0	0		nc|ENSG00000179889|Q6P996-3|PDXDC1;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;PDXDC1|p.Q682R|1|0.15|ENSG00000179889|chr16:15035491-15035491|A/G|missense_variant	nc|ENSG00000179889|Q6P996-3|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.287353515625	2	550.28714	1098.55973	0.4756	0.00026171	-0.052577	-2.8932E-05	0.42302	0.00023278	550.2871154698385	39.268	0.79778	39.367	39.046	39.844	0.099403					61	28	3	0	0	0	0.088443	1	8260	8260		39.95	15.929	1	821150			45344	7150	26175	26176	55045	55045					0.01438903520556778
STEPPYSQK	9	Unmodified	_STEPPYSQK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000443590.1_1_2:107314616-107314670:-|nuORF;ENST00000359165.5_1_12:19610040-19610154:-|nuORF;ENST00000401075.3_1_1:31961199-31961370:-|nuORF;ENST00000434005.1_1_7:22551057-22551540:-|nuORF	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.75146484375	2	518.750921	1035.48729	0.23454	0.00012167	-0.89206	-0.00046276	-0.65752	-0.00034109	518.7510114839037	18.473	2.7959	18.473	17.296	20.092	0					314	98	6	0	0	0	6.549E-06	8	1905	1855;1905;1949;1967;2009;2058;2102;2155		155.95	106.02	1	9947000			45345	5239	26176	26177	55046;55047;55048;55049;55050;55051;55052;55053	55047					-0.029034305530103666
STEPPYSQK	9	Unmodified	_STEPPYSQK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000443590.1_1_2:107314616-107314670:-|nuORF;ENST00000359165.5_1_12:19610040-19610154:-|nuORF;ENST00000401075.3_1_1:31961199-31961370:-|nuORF;ENST00000434005.1_1_7:22551057-22551540:-|nuORF	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7518310546875	2	518.750921	1035.48729	0.15028	7.7957E-05	-0.66703	-0.00034602	-0.51676	-0.00026807	518.7511163246189	18.529	2.8916	18.412	17.289	20.18	-0.11739					345	100	6	0	0	0	8.0996E-05	9	1951	1899;1951;1994;2039;2078;2120;2161;2207;2261		143.91	93.976	1	10118000			45346	5239	26176	26177	55054;55055;55056;55057;55058;55059;55060;55061;55062	55055					-0.029034305530103666
STEPPYSQK	9	Unmodified	_STEPPYSQK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000443590.1_1_2:107314616-107314670:-|nuORF;ENST00000359165.5_1_12:19610040-19610154:-|nuORF;ENST00000401075.3_1_1:31961199-31961370:-|nuORF;ENST00000434005.1_1_7:22551057-22551540:-|nuORF	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7510986328125	2	518.750921	1035.48729	-0.0061672	-3.1992E-06	-0.48054	-0.00024928	-0.48671	-0.00025248	518.7512658705504	18.515	2.7556	18.457	17.332	20.087	-0.058172					310	97	6	0	0	0	0.00010651	8	1993	1892;1942;1993;2035;2078;2119;2165;2209		139.78	89.849	1	11802000			45347	5239	26176	26177	55063;55064;55065;55066;55067;55068;55069;55070	55065					-0.029034305530103666
STEPWTTSQ	9	Unmodified	_STEPWTTSQ_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.7509765625	2	518.732729	1035.4509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.349	1	19.349	18.849	19.849	0								0	0	0	0.21726	1	2207	2207		16.942	1.0951	1		+		45348	18137	26177	26178	55071	55071					-0.06540307449722604
STEQESPIQPF	11	Unmodified	_STEQESPIQPF_					0	0	0		ENST00000496418.5_1_3:132361537-132378459:-|nuORF	ENST00000496418.5_1_3:132361537-132378459:-|nuORF	ENST00000496418.5_1_3:132361537-132378459:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.9061584472656	3	421.534825	1261.58265	-0.08445	-3.5599E-05	-1.9164	-0.00080784	-2.0009	-0.00084344	421.5338310910634	17.522	0.37171	17.522	17.318	17.69	0					14	12	2	0	0	0	0.33303	1	1617	1617		2.4348	0.18206	1	27381			45349	11233	26178	26179	55072	55072					-0.037681221526327136
STESFVTLL	9	Unmodified	_STESFVTLL_					0	0	0			REV__ENSG00000214226|ENST00000397861|C17orf67	REV__ENSG00000214226|ENST00000397861|C17orf67	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3058776855469	2	498.76604	995.517527	0.26767	0.00013351	1.7715	0.00088354	2.0391	0.001017	498.7665306214636	19.383	0.48275	19.267	19.005	19.488	-0.11592					32	16	3	0	0	0	0.25526	1	2180	2180		7.9102	0	1	46413	+		45350	19056	26179	26180	55073	55073					0.01958928112196645
STEYIKNLHK	10	Unmodified	_STEYIKNLHK_					0	0	0			REV__ENST00000454859.7_1_6:127635969-127637633:-|nuORF	REV__ENST00000454859.7_1_6:127635969-127637633:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5592346191406	3	411.559305	1231.65609	0.33587	0.00013823	-0.68695	-0.00028272	-0.35108	-0.00014449	411.5592875969908	35.92	1.9217	36.006	35.671	37.592	0.086246					186	69	5	0	0	0	0.20826	1	7209	7209		31.636	4.5069	1	16899000	+		45351	21154	26180	26181	55074	55074					0.04952471080514442
STFAAFFTR	9	Unmodified	_STFAAFFTR_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENST00000460243.1_1_3:53262881-53263452:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2666625976562	2	524.266542	1046.51853	0.85851	0.00045009	0.063798	3.3447E-05	0.92231	0.00048353	524.2664142678126	60.881	0.44413	60.881	60.548	60.992	0					25	15	2	0	0	0	0.0008224	1	14902	14902		125.04	88.911	1	658430			45352	5758	26181	26182	55075	55075					-0.0028681272826815984
STFAAFFTR	9	Unmodified	_STFAAFFTR_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENST00000460243.1_1_3:53262881-53263452:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2666015625	2	524.266542	1046.51853	0.75433	0.00039547	-0.041374	-2.1691E-05	0.71295	0.00037378	524.266406422613	60.818	0.46001	60.915	60.579	61.039	0.096985					25	15	2	0	0	0	0.0040516	1	14862	14862		93.938	67.054	1	967920			45353	5758	26181	26182	55076	55076					-0.0028681272826815984
STFAAFFTR	9	Unmodified	_STFAAFFTR_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENST00000460243.1_1_3:53262881-53263452:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2669067382812	2	524.266542	1046.51853	0.79708	0.00041788	0.047972	2.515E-05	0.84506	0.00044303	524.2665009380399	60.92	0.36753	60.911	60.625	60.992	-0.0094528					23	13	2	0	0	0	0.001957	1	14902	14902		110.55	79.916	1	760810			45354	5758	26181	26182	55077	55077					-0.0028681272826815984
STFDTQITK	9	Unmodified	_STFDTQITK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7667846679688	2	520.766571	1039.51859	0.57356	0.00029869	0.38782	0.00020196	0.96138	0.00050065	520.7668393844582	32.669	0.89322	32.669	32.366	33.259	0					79	31	4	0	0	0	0.0010993	1	6225	6225		121.5	66.001	1	1490700			45355	8602	26182	26183	55078	55078					0.00041142481086353655
STFDTQITK	9	Unmodified	_STFDTQITK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7667846679688	2	520.766571	1039.51859	0.55156	0.00028723	0.32732	0.00017046	0.87888	0.00045769	520.7668362801139	32.554	0.88132	32.609	32.317	33.199	0.055309					71	31	4	0	0	0	0.00054505	1	6192	6192		128.58	74.746	1	1715000			45356	8602	26182	26183	55079	55079					0.00041142481086353655
STFDTQITK	9	Unmodified	_STFDTQITK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7667846679688	2	520.766571	1039.51859	0.3943	0.00020534	0.5653	0.00029439	0.9596	0.00049973	520.7669401609526	32.551	0.92241	32.606	32.336	33.258	0.054371					70	33	3	0	0	0	0.00054505	1	6238	6238		128.58	74.746	1	1440000			45357	8602	26182	26183	55080	55080					0.00041142481086353655
STFDTQITKK	10	Unmodified	_STFDTQITKK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.8140869140625	2	584.814053	1167.61355	0.27106	0.00015852	0.32028	0.00018731	0.59134	0.00034582	584.8141708249871	25.033	0.71389	25.033	24.79	25.504	0					69	24	4	0	0	0	1.0854E-05	2	3906	3906;3953		150.18	100.65	1	783880			45358	8602	26183	26184	55081;55082	55081					0.03645075952249499
STFDTQITKK	10	Unmodified	_STFDTQITKK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.8142700195312	2	584.814053	1167.61355	0.098762	5.7758E-05	0.59053	0.00034535	0.68929	0.00040311	584.8143298348106	25.082	0.72905	25.026	24.809	25.539	-0.055931					66	25	4	0	0	0	1.0854E-05	2	3932	3932;3979		150.18	92.927	1	833960			45359	8602	26183	26184	55083;55084	55083					0.03645075952249499
STFDTQITKK	10	Unmodified	_STFDTQITKK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.814208984375	2	584.814053	1167.61355	-0.060399	-3.5322E-05	0.66479	0.00038878	0.6044	0.00035346	584.8144147743135	25.057	0.64137	25.025	24.765	25.406	-0.031408					59	21	4	0	0	0	0.0011491	2	3913	3913;3955		118.81	83.201	1	770240			45360	8602	26183	26184	55085;55086	55085					0.03645075952249499
STFESKSYK	9	Unmodified	_STFESKSYK_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3244018554688	2	538.766571	1075.51859	0.39892	0.00021493	-0.60236	-0.00032453	-0.20343	-0.0001096	538.7661702036384	16.69	0.49196	16.69	16.433	16.925	0					30	16	3	0	0	0	0.2524	1	1393	1393		11.495	8.2134	1	148370			45361	6557	26184	26185	55087	55087					-0.016148575188935865
STFESKSYK	9	Unmodified	_STFESKSYK_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7666625976562	2	538.766571	1075.51859	0.22669	0.00012213	-0.10279	-5.5379E-05	0.1239	6.6752E-05	538.766384495996	16.839	0.58205	16.725	16.532	17.114	-0.11434					36	20	3	0	0	0	0.25714	1	1474	1474		15.248	9.9516	1	130490			45362	6557	26184	26185	55088	55088					-0.016148575188935865
STFESKSYK	9	Unmodified	_STFESKSYK_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7665405273438	2	538.766571	1075.51859	0.51533	0.00027764	-0.44788	-0.0002413	0.067448	3.6339E-05	538.7662564941588	16.751	0.53254	16.689	16.382	16.915	-0.062534					36	18	3	0	0	0	0.22215	2	1393	1393;1439		20.415	13.691	1	129520			45363	6557	26184	26185	55089;55090	55089					-0.016148575188935865
STFFYPKLK	9	Unmodified	_STFFYPKLK_					0	0	0		nc|ENSG00000163904|Q9HC62-2|SENP2;ENSG00000163904|ENST00000296257|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.8158569335938	2	565.815867	1129.61718	0.52742	0.00029842	-0.4336	-0.00024534	0.093828	5.3089E-05	565.8157420275617	45.911	0.89973	45.911	45.53	46.43	0					81	32	4	0	0	0	0.0016712	2	10282	10235;10282		114.2	77.695	1	4133400			45364	5754	26185	26186	55091;55092	55092					0.05755790516786874
STFFYPKLK	9	Unmodified	_STFFYPKLK_					0	0	0		nc|ENSG00000163904|Q9HC62-2|SENP2;ENSG00000163904|ENST00000296257|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.8157958984375	2	565.815867	1129.61718	0.35512	0.00020093	-0.50176	-0.00028391	-0.14664	-8.2971E-05	565.8156941557393	45.72	0.70444	45.78	45.418	46.123	0.059837					73	24	5	0	0	0	0.0016712	1	10239	10239		114.2	84.361	1	4791600			45365	5754	26185	26186	55093	55093					0.05755790516786874
STFFYPKLK	9	Unmodified	_STFFYPKLK_					0	0	0		nc|ENSG00000163904|Q9HC62-2|SENP2;ENSG00000163904|ENST00000296257|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	nc|ENSG00000163904|Q9HC62-2|SENP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.81591796875	2	565.815867	1129.61718	0.4565	0.00025829	-0.36585	-0.000207	0.09065	5.1291E-05	565.8156999730305	45.729	0.71222	45.794	45.408	46.121	0.065048					75	25	4	0	0	0	0.0024096	2	10220	10177;10220		106.94	70.434	1	4691000			45366	5754	26185	26186	55094;55095	55095					0.05755790516786874
STFGGLHQHER	11	Unmodified	_STFGGLHQHER_					0	0	0		nc|ENSG00000071564|P15923-3|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-2|TCF3	nc|ENSG00000071564|P15923-3|TCF3	nc|ENSG00000071564|P15923-3|TCF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.0815124511719	3	423.542537	1267.60578	-0.25848	-0.00010948	0.22743	9.6325E-05	-0.031053	-1.3152E-05	423.54261164778796	18.175	0.4285	18.058	17.896	18.325	-0.11739					35	14	3	0	0	0	0.4709	1	1816	1816		1.9275	0.59786	1	69606			45367	960	26186	26187	55096	55096					-0.01731638524643131
STFHKTLNLLT	11	Unmodified	_STFHKTLNLLT_					0	0	0			REV__ENSG00000177853|ENST00000316045|ZNF518A	REV__ENSG00000177853|ENST00000316045|ZNF518A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.8589477539062	2	637.858795	1273.70304	0.31692	0.00020215	0.056783	3.622E-05	0.3737	0.00023837	637.8587400503632	43.54	0.62497	43.54	43.307	43.932	0					50	22	3	0	0	0	0.37764	2	9560	9560;9618		22.658	22.658	1	1141200	+		45368	18006	26187	26188	55097;55098	55097					0.07713330631668214
STFHKTLNLLT	11	Unmodified	_STFHKTLNLLT_					0	0	0			REV__ENSG00000177853|ENST00000316045|ZNF518A	REV__ENSG00000177853|ENST00000316045|ZNF518A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.57476806640625	3	425.574955	1273.70304	-0.083886	-3.57E-05	-0.30161	-0.00012836	-0.3855	-0.00016406	425.5748380011753	43.531	0.89509	43.531	43.281	44.176	0					61	32	3	0	0	0	0.37764	1	9617	9617		14.171	3.8555	1	1258300	+		45369	18006	26187	26188	55099	55099					0.07713330631668214
STFHKTLNLLT	11	Unmodified	_STFHKTLNLLT_					0	0	0			REV__ENSG00000177853|ENST00000316045|ZNF518A	REV__ENSG00000177853|ENST00000316045|ZNF518A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.5747985839844	3	425.574955	1273.70304	-0.083886	-3.57E-05	-0.30161	-0.00012836	-0.3855	-0.00016406	425.5748380011753	43.531	0.89509	43.531	43.281	44.176	0					61	32	3	0	0	0	0.32369	1	9557	9557		16.838	3.9824	1	1258300	+		45370	18006	26187	26188	55100	55100					0.07713330631668214
STFHKTLNLLT	11	Unmodified	_STFHKTLNLLT_					0	0	0			REV__ENSG00000177853|ENST00000316045|ZNF518A	REV__ENSG00000177853|ENST00000316045|ZNF518A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.57489013671875	3	425.574955	1273.70304	0.067103	2.8557E-05	-0.48055	-0.00020451	-0.41345	-0.00017595	425.574595085065	43.272	0.90025	43.349	43.075	43.975	0.077518					77	32	4	0	0	0	0.3013	1	9471	9471		22.109	12.865	1	1225500	+		45371	18006	26187	26188	55101	55101					0.07713330631668214
STFHKTLNLLT	11	Unmodified	_STFHKTLNLLT_					0	0	0			REV__ENSG00000177853|ENST00000316045|ZNF518A	REV__ENSG00000177853|ENST00000316045|ZNF518A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.5748291015625	3	425.574955	1273.70304	-0.025339	-1.0784E-05	-0.41606	-0.00017706	-0.4414	-0.00018785	425.5746465713906	43.205	1.0135	43.289	43.035	44.049	0.083996					87	37	4	0	0	0	0.25663	1	9471	9471		26.121	14.603	1	1247700	+		45372	18006	26187	26188	55102	55102					0.07713330631668214
STFHKTLNLLT	11	Unmodified	_STFHKTLNLLT_					0	0	0			REV__ENSG00000177853|ENST00000316045|ZNF518A	REV__ENSG00000177853|ENST00000316045|ZNF518A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	425.574955	1273.70304	0.067103	2.8557E-05	-0.48055	-0.00020451	-0.41345	-0.00017595	425.574595085065	43.272	0.90025	43.349	43.075	43.975	0.077518	-0.040232	-0.00013178	NaN	26.121	77	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1225500	+		45373	18006	26187	26188							0.07713330631668214
STFHKTLNLLT	11	Unmodified	_STFHKTLNLLT_					0	0	0			REV__ENSG00000177853|ENST00000316045|ZNF518A	REV__ENSG00000177853|ENST00000316045|ZNF518A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	425.574955	1273.70304	-0.025339	-1.0784E-05	-0.41606	-0.00017706	-0.4414	-0.00018785	425.5746465713906	43.205	1.0135	43.289	43.035	44.049	0.083996	-0.10102	-4.9434E-05	NaN	26.121	87	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1247700	+		45374	18006	26187	26188							0.07713330631668214
STFIEDIEPRP	11	Unmodified	_STFIEDIEPRP_					0	0	0			REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF	REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.8821105957031	3	435.22247	1302.64558	-0.19848	-8.6381E-05	0.08944	3.8926E-05	-0.10904	-4.7455E-05	435.22239824880813	17.506	0.45142	17.388	17.18	17.631	-0.11739					26	15	2	0	0	0	0.3333	1	1631	1631		1.3296	1.1703	1	31890	+		45375	15888	26188	26189	55103	55103					0.006364436354260761
STFIGRAAAK	10	Unmodified	_STFIGRAAAK_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.8146057128906	2	511.293091	1020.57163	0.43901	0.00022446	-0.88442	-0.0004522	-0.44541	-0.00022774	511.29252247684366	21.087	0.57619	21.087	20.825	21.401	0					36	19	2	0	0	0	0.31323	1	2695	2695		15.248	4.4246	1	134400			45376	1692	26189	26190	55104	55104					0.06216565054410239
STFIGRAAAK	10	Unmodified	_STFIGRAAAK_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2923278808594	2	511.293091	1020.57163	0.47836	0.00024458	-0.95671	-0.00048916	-0.47835	-0.00024458	511.2923394797147	21.207	0.59438	21.097	20.894	21.488	-0.11003					35	20	2	0	0	0	0.22295	1	2818	2818		29.841	5.82	1	166860			45377	1692	26189	26190	55105	55105					0.06216565054410239
STFIGRAAAK	10	Unmodified	_STFIGRAAAK_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000490753.1_1_20:2637050-2637903:+|nuORF;ENST00000466447.5_1_20:2636822-2638033:+|nuORF;ENST00000492135.5_1_20:2636822-2638937:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.292724609375	2	511.293091	1020.57163	0.3502	0.00017905	-0.67761	-0.00034646	-0.32741	-0.0001674	511.2926440214508	21.176	0.6549	21.123	20.861	21.516	-0.05291					47	22	3	0	0	0	0.30872	1	2778	2778		19.362	1.2156	1	148430			45378	1692	26189	26190	55106	55106					0.06216565054410239
STFKNVTYK	9	Unmodified	_STFKNVTYK_					0	0	0		nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2929077148438	2	544.292756	1086.57096	0.26282	0.00014305	-0.072681	-3.9559E-05	0.19014	0.00010349	544.2928229376323	22.644	0.5234	22.644	22.446	22.969	0					37	17	3	0	0	0	0.30824	2	3220	3220;3272		7.609	2.7119	1	80142			45379	2619	26190	26191	55107;55108	55107					0.031137256147076187
STFKNVTYK	9	Unmodified	_STFKNVTYK_					0	0	0		nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2933349609375	2	544.292756	1086.57096	0.36693	0.00019972	0.25521	0.00013891	0.62213	0.00033862	544.2930550678624	22.763	0.48122	22.675	22.512	22.993	-0.087608					33	16	3	0	0	0	0.32371	1	3292	3292		5.2969	2.9942	1	99933			45380	2619	26190	26191	55109	55109					0.031137256147076187
STFKNVTYK	9	Unmodified	_STFKNVTYK_					0	0	0		nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2930908203125	2	544.292756	1086.57096	0.46272	0.00025185	0.22412	0.00012199	0.68684	0.00037384	544.292824326822	22.822	0.47484	22.777	22.529	23.004	-0.044867					33	16	3	0	0	0	0.26278	1	3265	3265		14.405	8.1996	1	110930			45381	2619	26190	26191	55110	55110					0.031137256147076187
STFMWRDLCK	10	Unmodified	_STFMWRDLCK_					0	0	0			REV__ENST00000575844.1_1_17:6939894-6940281:+|nuORF	REV__ENST00000575844.1_1_17:6939894-6940281:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	643.8047485351562	2	643.804651	1285.59475	-0.011019	-7.0942E-06	0.4429	0.00028514	0.43188	0.00027804	643.8048567017081	12.368	0.26664	12.3	12.196	12.462	-0.06806					19	8	3	0	0	0	0.41242	1	117	117		1.1933	0	1	63284	+		45382	22446	26191	26192	55111	55111					-0.0366250021477299
STFNQVVLK	9	Unmodified	_STFNQVVLK_					0	0	0		ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENSG00000063177|ENST00000549920|RPL18;ENST00000478088.1_1_16:76269257-76269449:-|nuORF;ENST00000552851.1_1_19:49119841-49122400:-|nuORF;nc|ENSG00000063177|Q07020-2|RPL18;ENST00000547892.1_1_19:49120227-49120731:-|nuORF	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2953491210938	2	518.295299	1034.57605	0.17168	8.8983E-05	-0.069744	-3.6148E-05	0.10194	5.2834E-05	518.2952758920445	41.117	0.68141	41.117	40.822	41.504	0					75	24	4	0	0	0	4.608E-24	3	8815	8815;8861;8912		240.95	152	1	5512300			45383	771	26192	26193	55112;55113;55114	55112					0.06014029477319127
STFNQVVLK	9	Unmodified	_STFNQVVLK_					0	0	0		ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENSG00000063177|ENST00000549920|RPL18;ENST00000478088.1_1_16:76269257-76269449:-|nuORF;ENST00000552851.1_1_19:49119841-49122400:-|nuORF;nc|ENSG00000063177|Q07020-2|RPL18;ENST00000547892.1_1_19:49120227-49120731:-|nuORF	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.29541015625	2	518.295299	1034.57605	0.33983	0.00017613	-0.26452	-0.0001371	0.075304	3.9029E-05	518.2951660322718	40.95	0.79564	41.041	40.743	41.539	0.09045					90	29	4	0	0	0	1.4641E-16	2	8807	8807;8854		209.87	143.41	1	5755800			45384	771	26192	26193	55115;55116	55115					0.06014029477319127
STFNQVVLK	9	Unmodified	_STFNQVVLK_					0	0	0		ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENSG00000063177|ENST00000549920|RPL18;ENST00000478088.1_1_16:76269257-76269449:-|nuORF;ENST00000552851.1_1_19:49119841-49122400:-|nuORF;nc|ENSG00000063177|Q07020-2|RPL18;ENST00000547892.1_1_19:49120227-49120731:-|nuORF	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2953491210938	2	518.295299	1034.57605	0.094774	4.9121E-05	-0.0091555	-4.7452E-06	0.085619	4.4376E-05	518.2952753355239	40.856	0.78576	40.956	40.694	41.48	0.099407					87	28	4	0	0	0	1.4641E-16	2	8771	8771;8828		209.87	134.11	1	5847700			45385	771	26192	26193	55117;55118	55117					0.06014029477319127
STFNVFVGK	9	Unmodified	_STFNVFVGK_					0	0	0		ENST00000494374.5_1_7:32997059-33028356:+|nuORF;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9	ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENST00000494374.5_1_7:32997059-33028356:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7690124511719	2	499.768917	997.523281	0.47338	0.00023658	0.15149	7.5709E-05	0.62487	0.00031229	499.768898470729	49.02	0.49395	49.02	48.773	49.267	0					56	17	4	0	0	0	0.0019382	2	11245	11245;11296		110.79	59.163	1	2560600			45386	3056	26193	26194	55119;55120	55119					0.024420714145321654
STFNVFVGK	9	Unmodified	_STFNVFVGK_					0	0	0		ENST00000494374.5_1_7:32997059-33028356:+|nuORF;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9	ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENST00000494374.5_1_7:32997059-33028356:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7692565917969	2	499.768917	997.523281	0.36197	0.0001809	0.31918	0.00015952	0.68115	0.00034042	499.76896357754396	49.067	0.51797	49.112	48.824	49.342	0.044891					57	18	4	0	0	0	0.003673	1	11314	11314		96.936	56.986	1	2686700			45387	3056	26193	26194	55121	55121					0.024420714145321654
STFNVFVGK	9	Unmodified	_STFNVFVGK_					0	0	0		ENST00000494374.5_1_7:32997059-33028356:+|nuORF;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9	ENST00000494374.5_1_7:32997059-33028356:+|nuORF	ENST00000494374.5_1_7:32997059-33028356:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.769287109375	2	499.768917	997.523281	0.19839	9.9147E-05	0.3845	0.00019216	0.58288	0.00029131	499.7690106896258	48.985	0.55266	49.017	48.743	49.295	0.032043					62	19	4	0	0	0	0.0019382	3	11251	11202;11251;11303		110.79	59.163	1	2543400			45388	3056	26193	26194	55122;55123;55124	55123					0.024420714145321654
STFQLHTRNEW	11	Unmodified	_STFQLHTRNEW_					0	0	0			REV__ENST00000595922.1_1_19:14920624-14932271:-|nuORF	REV__ENST00000595922.1_1_19:14920624-14932271:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7637634277344	3	473.56523	1417.67386	-0.085576	-4.0526E-05	-0.69327	-0.00032831	-0.77885	-0.00036884	473.56483885002643	23.33	0.53979	23.33	23.077	23.616	0					42	18	3	0	0	0	0.33303	1	3377	3377		2.4348	1.325	1	323510	+		45389	22598	26194	26195	55125	55125					-0.018268136646383937
STFQLHTRNEW	11	Unmodified	_STFQLHTRNEW_					0	0	0			REV__ENST00000595922.1_1_19:14920624-14932271:-|nuORF	REV__ENST00000595922.1_1_19:14920624-14932271:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7637634277344	3	473.56523	1417.67386	0.077495	3.6699E-05	-0.74496	-0.00035279	-0.66747	-0.00031609	473.56478808868917	23.473	0.57494	23.386	23.138	23.713	-0.087608					60	20	5	0	0	0	0.33169	1	3427	3427		3.8459	3.8459	1	364390	+		45390	22598	26194	26195	55126	55126					-0.018268136646383937
STFQLHTRNEW	11	Unmodified	_STFQLHTRNEW_					0	0	0			REV__ENST00000595922.1_1_19:14920624-14932271:-|nuORF	REV__ENST00000595922.1_1_19:14920624-14932271:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	473.56523	1417.67386	0.25312	0.00011987	-0.94511	-0.00044757	-0.69199	-0.0003277	473.56472235313834	23.498	0.5644	23.459	23.173	23.737	-0.038927	0.067399	-0.00022356	NaN	3.8459	55	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286170	+		45391	22598	26194	26195							-0.018268136646383937
STFQPANKLNK	11	Unmodified	_STFQPANKLNK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.5627746582031	3	416.562938	1246.66699	-0.19518	-8.1306E-05	-0.098217	-4.0914E-05	-0.2934	-0.00012222	416.5628657632511	23.659	0.96985	23.659	23.25	24.22	0					76	31	5	0	0	0	0.26959	1	3482	3482		24.957	9.9999	1	485390			45392	3572	26195	26196	55127	55127					0.05351873454787892
STFQPANKLNK	11	Unmodified	_STFQPANKLNK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.5628356933594	3	416.562938	1246.66699	0.12601	5.2489E-05	-0.331	-0.00013788	-0.205	-8.5395E-05	416.56277445700835	23.774	1.1844	23.701	23.313	24.498	-0.072559					62	25	3	0	0	0	0.3013	1	3518	3518		22.109	9.1802	1	499020			45393	3572	26195	26196	55128	55128					0.05351873454787892
STFQPANKLNK	11	Unmodified	_STFQPANKLNK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.3409423828125	2	624.340769	1246.66699	-0.040933	-2.5556E-05	0.17804	0.00011115	0.1371	8.5598E-05	624.3407951190335	23.78	0.52345	23.708	23.474	23.997	-0.072559					31	14	3	0	0	0	0.43809	1	3539	3539		4.5289	1.5336	1	94714			45394	3572	26195	26196	55129	55129					0.05351873454787892
STFQPANKLNK	11	Unmodified	_STFQPANKLNK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3407592773438	2	624.340769	1246.66699	0.26887	0.00016787	-0.033659	-2.1015E-05	0.23521	0.00014685	624.3407800726958	23.746	0.45914	23.707	23.506	23.965	-0.038927					26	15	2	0	0	0	0.44088	1	3542	3542		10.8	5.9025	1	109830			45395	3572	26195	26196	55130	55130					0.05351873454787892
STFQPANKLNK	11	Unmodified	_STFQPANKLNK_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	624.340769	1246.66699	0.26887	0.00016787	-0.033659	-2.1015E-05	0.23521	0.00014685	624.3407800726958	23.746	0.45914	23.707	23.506	23.965	-0.038927	-0.00020395	-0.00011127	NaN	4.5289	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109830			45396	3572	26195	26196							0.05351873454787892
STFQQMWISK	10	Oxidation (M)	_STFQQM(Oxidation (M))WISK_		STFQQM(1)WISK		STFQQM(200)WISK	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000403258.1_1_6:88985645-88985837:-|nuORF;ENST00000431536.1_1_1:78239597-78239909:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000441772.1_1_11:1824121-1824694:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.3084716796875	2	636.308081	1270.60161	0.69363	0.00044136	-0.39961	-0.00025427	0.29403	0.00018709	636.307864465147	45.748	0.77034	45.748	45.424	46.194	0					87	27	5	0	0	0	2.1585E-14	4	10247	10203;10247;10290;10345		200.78	132.94	1	4364900			45397	1050;2147	26196	26197	55131;55132;55133;55134	55132		130			-0.022868640625802072
STFQQMWISK	10	Oxidation (M)	_STFQQM(Oxidation (M))WISK_		STFQQM(1)WISK		STFQQM(180)WISK	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000403258.1_1_6:88985645-88985837:-|nuORF;ENST00000431536.1_1_1:78239597-78239909:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000441772.1_1_11:1824121-1824694:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.3082275390625	2	636.308081	1270.60161	0.718	0.00045687	-0.38756	-0.00024661	0.33043	0.00021026	636.3078161518279	45.435	0.75175	45.5	45.199	45.951	0.065048					93	27	5	0	0	0	3.4147E-10	3	10154	10103;10154;10206		179.72	133.98	1	4088800			45398	1050;2147	26196	26197	55135;55136;55137	55136		130			-0.022868640625802072
STFRESFKK	9	Unmodified	_STFRESFKK_					0	0	0		ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;nc|ENSG00000067066|P23497|SP100	ENSG00000067066|ENST00000340126|SP100;nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.3038330078125	2	565.303655	1128.59276	0.13612	7.6951E-05	0.42884	0.00024242	0.56496	0.00031937	565.3039473364655	18.253	0.4278	18.253	18.077	18.505	0					31	14	3	0	0	0	0.3208	1	1900	1900		5.7319	3.4291	1	96648			45399	855;12581	26197	26198	55138	55138					0.03360530363283942
STFRRFNI	8	Unmodified	_STFRRFNI_					0	0	0			REV__nc|ENSG00000169398|Q05397-2|PTK2	REV__nc|ENSG00000169398|Q05397-2|PTK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7669677734375	2	520.785433	1039.55631	0.3616	0.00018832	0.24026	0.00012512	0.60186	0.00031344	520.785547753451	31.507	1.4138	31.548	31.23	32.644	0.040991					120	50	4	0	0	0	0.42446	1	6195	6195		14.582	14.582	1	14352000	+		45400	17514	26198	26199	55139	55139					0.0381169825723191
STFRVPVER	9	Unmodified	_STFRVPVER_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.803955078125	2	545.803823	1089.59309	0.33868	0.00018485	-0.51436	-0.00028074	-0.17568	-9.5888E-05	545.803892774818	33.089	0.84457	33.089	32.72	33.564	0					93	29	5	0	0	0	0.0023895	1	6370	6370		107.1	54.831	1	1163900			45401	632	26199	26200	55140	55140					0.05187950083131909
STFRVPVER	9	Unmodified	_STFRVPVER_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.803955078125	2	545.803823	1089.59309	0.52613	0.00028717	-0.9462	-0.00051644	-0.42007	-0.00022928	545.8037629172568	32.946	0.9099	33.001	32.675	33.585	0.055309					97	32	6	0	0	0	0.022205	1	6335	6335		63.227	36.959	1	1203500			45402	632	26199	26200	55141	55141					0.05187950083131909
STFRVPVER	9	Unmodified	_STFRVPVER_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8038330078125	2	545.803823	1089.59309	0.52061	0.00028415	-0.73834	-0.00040299	-0.21772	-0.00011884	545.8038187568316	32.971	0.71909	33.025	32.71	33.429	0.054375					83	25	5	0	0	0	0.01251	2	6341	6341;6392		75.571	39.444	1	1160600			45403	632	26199	26200	55142;55143	55142					0.05187950083131909
STFRVPVERK	10	Unmodified	_STFRVPVERK_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.9034729003906	3	406.903295	1217.68806	-0.19233	-7.8261E-05	0.021039	8.5606E-06	-0.1713	-6.9701E-05	406.90346706103816	25.431	1.4239	25.431	24.986	26.41	0					147	49	5	0	0	0	0.0036858	3	4025	4025;4069;4115		99.318	99.318	1	3924000			45404	632	26200	26201	55144;55145;55146	55144					0.08791883554295055
STFRVPVERK	10	Unmodified	_STFRVPVERK_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.851318359375	2	609.851304	1217.68806	0.24256	0.00014793	0.023666	1.4433E-05	0.26623	0.00016236	609.8513783122257	25.426	0.47216	25.426	25.21	25.683	0					38	15	3	0	0	0	0.36163	1	4064	4064		15.739	8.1297	1	141750			45405	632	26200	26201	55147	55147					0.08791883554295055
STFRVPVERK	10	Unmodified	_STFRVPVERK_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.9035949707031	3	406.903295	1217.68806	-0.30352	-0.0001235	0.14836	6.0369E-05	-0.15516	-6.3135E-05	406.9035556754317	25.476	1.3	25.42	24.972	26.272	-0.055931					141	45	5	0	0	0	0.0006559	4	4073	4031;4073;4117;4171		125.42	99.418	1	4023000			45406	632	26200	26201	55148;55149;55150;55151	55149					0.08791883554295055
STFRVPVERK	10	Unmodified	_STFRVPVERK_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.8514404296875	2	609.851304	1217.68806	0.09316	5.6814E-05	0.21927	0.00013372	0.31243	0.00019054	609.8513046700353	25.462	0.49101	25.406	25.186	25.677	-0.055931					37	16	3	0	0	0	0.37383	1	4078	4078		12.873	6.1494	1	173000			45407	632	26200	26201	55152	55152					0.08791883554295055
STFRVPVERK	10	Unmodified	_STFRVPVERK_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.3533325195312	2	609.851304	1217.68806	-0.046642	-2.8445E-05	0.58855	0.00035893	0.54191	0.00033048	609.8515077367689	25.49	0.47305	25.458	25.209	25.682	-0.031408					38	16	3	0	0	0	0.36163	1	4062	4062		15.739	15.739	1	151120			45408	632	26200	26201	55153	55153					0.08791883554295055
STFRVPVERK	10	Unmodified	_STFRVPVERK_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9034729003906	3	406.903295	1217.68806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.398	1	25.367	24.867	25.867	-0.031408								0	0	0	1.0428E-05	1	4039	4039		107.71	84.936	1				45409	632	26200	26201	55154	55154					0.08791883554295055
STFRVPVERK	10	Unmodified	_STFRVPVERK_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9035339355469	3	406.903295	1217.68806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.533	1	25.502	25.002	26.002	-0.031408								0	0	0	2.3425E-05	1	4080	4080		95.507	72.492	1				45410	632	26200	26201	55155	55155					0.08791883554295055
STFRVPVERK	10	Unmodified	_STFRVPVERK_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9031677246094	3	406.903295	1217.68806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.669	1	25.646	25.146	26.146	-0.022238								0	0	0	0.0889	1	4121	4121		56.328	37.607	1				45411	632	26200	26201	55156	55156					0.08791883554295055
STFRVPVERK	10	Unmodified	_STFRVPVERK_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	609.851304	1217.68806	0.09316	5.6814E-05	0.21927	0.00013372	0.31243	0.00019054	609.8513046700353	25.462	0.49101	25.406	25.186	25.677	-0.055931	-0.024372	-6.1827E-05	NaN	15.739	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173000			45412	632	26200	26201							0.08791883554295055
STFSAPLNK	9	Unmodified	_STFSAPLNK_					0	0	0		nc|ENSG00000163026|Q9H6R7-2|WDCP;ENSG00000163026|ENST00000295148|WDCP	nc|ENSG00000163026|Q9H6R7-2|WDCP	nc|ENSG00000163026|Q9H6R7-2|WDCP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7588806152344	2	482.758549	963.502546	0.13688	6.6082E-05	-0.075582	-3.6488E-05	0.061303	2.9594E-05	482.7585575968669	32.982	0.76418	32.982	32.72	33.484	0					45	26	3	0	0	0	0.0098873	3	6338	6327;6338;6389		79.596	33.897	1	592780			45413	5642	26201	26202	55157;55158;55159	55158					0.01933481034848228
STFSAPLNK	9	Unmodified	_STFSAPLNK_					0	0	0		nc|ENSG00000163026|Q9H6R7-2|WDCP;ENSG00000163026|ENST00000295148|WDCP	nc|ENSG00000163026|Q9H6R7-2|WDCP	nc|ENSG00000163026|Q9H6R7-2|WDCP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.75872802734375	2	482.758549	963.502546	0.21978	0.0001061	-0.044664	-2.1562E-05	0.17512	8.4541E-05	482.7585183178371	32.888	0.61108	32.943	32.73	33.341	0.055309					35	21	2	0	0	0	0.0037772	3	6309	6277;6309;6366		96.111	30.876	1	680560			45414	5642	26201	26202	55160;55161;55162	55161					0.01933481034848228
STFSAPLNK	9	Unmodified	_STFSAPLNK_					0	0	0		nc|ENSG00000163026|Q9H6R7-2|WDCP;ENSG00000163026|ENST00000295148|WDCP	nc|ENSG00000163026|Q9H6R7-2|WDCP	nc|ENSG00000163026|Q9H6R7-2|WDCP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7585754394531	2	482.758549	963.502546	0.24323	0.00011742	-0.14702	-7.0973E-05	0.096212	4.6447E-05	482.7585100926904	32.87	0.66501	32.925	32.71	33.375	0.054371					42	23	3	0	0	0	0.0054984	1	6310	6310		86.332	38.737	1	595370			45415	5642	26201	26202	55163	55163					0.01933481034848228
STFSEIFKK	9	Unmodified	_STFSEIFKK_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7951049804688	2	543.795132	1085.57571	0.41113	0.00022357	-0.46936	-0.00025524	-0.058231	-3.1666E-05	543.7949963702375	41.862	1.0739	41.862	41.578	42.652	0					80	43	3	0	0	0	0.00051734	3	9036	9036;9089;9136		128.93	59.828	1	4527800			45416	5758	26202	26203	55164;55165;55166	55164					0.036346097574551095
STFSEIFKK	9	Unmodified	_STFSEIFKK_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7953491210938	2	543.795132	1085.57571	0.48378	0.00026308	-0.43712	-0.0002377	0.046664	2.5376E-05	543.795087540309	41.463	0.57173	41.553	41.215	41.787	0.090252					51	24	3	0	0	0	0.00019464	2	8932	8932;8977		133.05	54.324	1	6471800			45417	5758	26202	26203	55167;55168	55167					0.036346097574551095
STFSEIFKK	9	Unmodified	_STFSEIFKK_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.795166015625	2	543.795132	1085.57571	0.73178	0.00039794	-0.70191	-0.00038169	0.02987	1.6243E-05	543.7947865079776	41.4	1.4402	41.497	41.093	42.533	0.096626					84	54	3	0	0	0	0.00010125	2	8901	8901;8956		140.63	61.905	1	5539400			45418	5758	26202	26203	55169;55170	55169					0.036346097574551095
STFSGLAKHK	10	Unmodified	_STFSGLAKHK_					0	0	0		ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2985229492188	2	538.298373	1074.58219	0.2164	0.00011649	-0.26456	-0.00014241	-0.048161	-2.5925E-05	538.2982483588826	17.651	0.4029	17.534	17.323	17.726	-0.11739					23	13	2	0	0	0	0.31323	1	1709	1709		15.248	5.1746	1	125030			45419	501	26203	26204	55171	55171					0.04788547708835722
STFSGLAKHK	10	Unmodified	_STFSGLAKHK_					0	0	0		ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	538.298373	1074.58219	0.44627	0.00024023	-0.63744	-0.00034313	-0.19118	-0.00010291	538.2979416914756	17.475	0.33183	17.475	17.296	17.628	0	-0.030537	-6.9039E-05	NaN	15.248	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102960			45420	501	26203	26204							0.04788547708835722
STFSGLAKHK	10	Unmodified	_STFSGLAKHK_					0	0	0		ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	ENSG00000019549|ENST00000020945|SNAI2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	538.298373	1074.58219	0.45938	0.00024728	-0.98547	-0.00053047	-0.52608	-0.00028319	538.2978015741587	17.568	0.43609	17.507	17.33	17.766	-0.060429	0.0020221	-0.00044372	NaN	15.248	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120810			45421	501	26203	26204							0.04788547708835722
STFSTLVTVLK	11	Unmodified	_STFSTLVTVLK_					0	0	0		ENSG00000110046|ENST00000377264|ATG2A;nc|ENSG00000110046|Q2TAZ0-3|ATG2A	ENSG00000110046|ENST00000377264|ATG2A	ENSG00000110046|ENST00000377264|ATG2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.79541015625	2	598.350271	1194.68599	0.52435	0.00031375	-0.90512	-0.00054158	-0.38077	-0.00022783	598.8516328339589	66.694	0.5932	66.694	66.482	67.076	0					29	20	2	0	0	0	0.32909	1	16686	16686		10.899	4.1758	1	144800			45422	2290	26204	26205	55172	55172					0.09643410025842059
STFTSESTTV	10	Unmodified	_STFTSESTTV_					0	0	0		ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2460327148438	2	530.245669	1058.47678	0.40349	0.00021395	-0.47643	-0.00025263	-0.072946	-3.8679E-05	530.2457692916914	22.124	2.0241	22.124	21.545	23.569	0					222	71	5	0	0	0	0.1715	4	3015	2922;2971;3015;3057		36.127	5.4905	1	3004500			45423	1617	26205	26206	55173;55174;55175;55176	55175					-0.05011457998102742
STFTSESTTV	10	Unmodified	_STFTSESTTV_					0	0	0		ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2461547851562	2	530.245669	1058.47678	0.33366	0.00017692	-0.29765	-0.00015783	0.036014	1.9097E-05	530.2458109453462	22.195	2.2916	22.095	21.244	23.535	-0.10034					231	82	5	0	0	0	0.091471	5	2990	2940;2990;3032;3080;3122		49.933	19.296	1	2921700			45424	1617	26205	26206	55177;55178;55179;55180;55181	55178					-0.05011457998102742
STFTSESTTV	10	Unmodified	_STFTSESTTV_					0	0	0		ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.24609375	2	530.245669	1058.47678	0.32435	0.00017199	-0.3527	-0.00018702	-0.028349	-1.5032E-05	530.2458101189023	22.192	2.263	22.143	21.52	23.783	-0.049377					223	80	5	0	0	0	0.1715	5	2979	2930;2979;3023;3067;3111		36.127	5.4905	1	2475500			45425	1617	26205	26206	55182;55183;55184;55185;55186	55183					-0.05011457998102742
STFVGLLLNK	10	Unmodified	_STFVGLLLNK_					0	0	0		ENST00000532613.1_1_11:119229420-119234603:-|nuORF;nc|ENSG00000036672|O75604-4|USP2	ENST00000532613.1_1_11:119229420-119234603:-|nuORF	ENST00000532613.1_1_11:119229420-119234603:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.7142333984375	2	546.326599	1090.63865	0.52419	0.00028638	0.11173	6.104E-05	0.63592	0.00034742	546.3261897086265	64.637	1.4053	64.637	64.053	65.458	0					111	51	3	0	0	0	0.28569	1	16187	16187		26.268	7.0112	1	507460			45426	11642	26206	26207	55187	55187					0.09695175545516577
STFYIPSFLK	10	Unmodified	_STFYIPSFLK_					0	0	0		ENST00000379607.9_1_X:20146365-20150302:-|nuORF	ENST00000379607.9_1_X:20146365-20150302:-|nuORF	ENST00000379607.9_1_X:20146365-20150302:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.2994995117188	2	601.826432	1201.63831	0.38452	0.00023142	-0.73346	-0.00044142	-0.34894	-0.00021	601.8260909476946	73.408	0.63364	73.462	73.091	73.725	0.053841					43	22	3	0	0	0	0.31642	1	18743	18743		10.8	5.0677	1	217540			45427	9969	26207	26208	55188	55188					0.04555755825640517
STFYIPSFLK	10	Unmodified	_STFYIPSFLK_					0	0	0		ENST00000379607.9_1_X:20146365-20150302:-|nuORF	ENST00000379607.9_1_X:20146365-20150302:-|nuORF	ENST00000379607.9_1_X:20146365-20150302:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3057861328125	2	601.826432	1201.63831	0.36419	0.00021918	-0.64731	-0.00038957	-0.28312	-0.00017039	601.8260684270241	73.48	0.59196	73.451	73.126	73.718	-0.029305					43	21	3	0	0	0	0.26476	1	18794	18794		33.445	19.539	1	303870			45428	9969	26207	26208	55189	55189					0.04555755825640517
STFYIPSFLK	10	Unmodified	_STFYIPSFLK_					0	0	0		ENST00000379607.9_1_X:20146365-20150302:-|nuORF	ENST00000379607.9_1_X:20146365-20150302:-|nuORF	ENST00000379607.9_1_X:20146365-20150302:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	601.826432	1201.63831	0.34652	0.00020855	-0.55663	-0.000335	-0.21011	-0.00012645	601.8262055618959	73.394	0.55051	73.394	73.163	73.713	0	-0.04153	0.00010947	NaN	27.223	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225640			45429	9969	26207	26208							0.04555755825640517
STGAPAAIK	9	Unmodified	_STGAPAAIK_					0	0	0		ENST00000483659.5_1_2:85622736-85628768:-|nuORF;nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG	ENST00000483659.5_1_2:85622736-85628768:-|nuORF	ENST00000483659.5_1_2:85622736-85628768:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.21099853515625	2	408.23471	814.454868	-0.31934	-0.00013037	1.5093	0.00061614	1.1899	0.00048577	408.2353987224486	18.565	0.72961	18.507	18.199	18.929	-0.058174					56	25	3	0	0	0	0.21389	1	1940	1940		25.399	3.6527	1	93528			45430	613	26208	26209	55190	55190					0.0402182683465071
STGAPAAIK	9	Unmodified	_STGAPAAIK_					0	0	0		ENST00000483659.5_1_2:85622736-85628768:-|nuORF;nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG	ENST00000483659.5_1_2:85622736-85628768:-|nuORF	ENST00000483659.5_1_2:85622736-85628768:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	408.23471	814.454868	-0.2195	-8.9609E-05	1.6041	0.00065485	1.3846	0.00056524	408.2353866287289	18.436	0.68765	18.436	18.077	18.765	0	-0.026254	0.00011255	NaN	25.399	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101800			45431	613	26208	26209							0.0402182683465071
STGHVGFIFK	10	Unmodified	_STGHVGFIFK_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.795654296875	2	546.795466	1091.57638	0.38343	0.00020966	0.1386	7.5785E-05	0.52203	0.00028544	546.795423944903	40.061	0.95969	40.061	39.644	40.604	0					102	34	4	0	0	0	8.5522E-05	2	8496	8496;8548		133.05	102.42	1	2444500			45432	4062	26209	26210	55191;55192	55191					0.034254491971978496
STGHVGFIFK	10	Unmodified	_STGHVGFIFK_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.795654296875	2	546.795466	1091.57638	0.69099	0.00037783	0.2673	0.00014616	0.95829	0.00052399	546.7957326335255	39.825	1.6398	39.918	39.078	40.718	0.09267					133	58	4	0	0	0	0.00094584	2	8436	8436;8487		121.53	89.229	1	2703400			45433	4062	26209	26210	55193;55194	55193					0.034254491971978496
STGHVGFIFK	10	Unmodified	_STGHVGFIFK_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7957153320312	2	546.795466	1091.57638	0.5776	0.00031583	0.11049	6.0416E-05	0.6881	0.00037625	546.7953692299645	39.818	0.82946	39.918	39.65	40.479	0.099407					98	29	5	0	0	0	0.0029823	2	8465	8410;8465		103.42	69.018	1	2944800			45434	4062	26209	26210	55195;55196	55196					0.034254491971978496
STGLLVRRP	9	Unmodified	_STGLLVRRP_					0	0	0			REV__ENST00000535977.5_1_16:678431-678971:+|nuORF	REV__ENST00000535977.5_1_16:678431-678971:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2646789550781	2	499.808908	997.603263	0.050238	2.511E-05	-2.8563	-0.0014276	-2.8061	-0.0014025	499.8092266221562	30.33	0.621	30.357	30.083	30.704	0.027159					43	21	3	0	0	0	0.24688	1	5600	5600		10.074	0	1	282640	+		45435	22076	26210	26211	55197	55197					0.10436557808372982
STGRPLGTTK	10	Unmodified	_STGRPLGTTK_					0	0	0		nc|nan|Q7Z6I8-2|C5orf24;ENSG00000181904|ENST00000394976|C5orf24	nc|nan|Q7Z6I8-2|C5orf24	nc|nan|Q7Z6I8-2|C5orf24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2881164550781	2	509.288005	1016.56146	-0.013272	-6.7592E-06	-0.13219	-6.7322E-05	-0.14546	-7.4081E-05	509.28802832545796	13.428	0.75742	13.428	13.09	13.847	0					65	26	4	0	0	0	0.36698	1	455	455		9.544	9.544	1	429970			45436	7259	26211	26212	55198	55198					0.05383957329183886
STGRPLGTTK	10	Unmodified	_STGRPLGTTK_					0	0	0		nc|nan|Q7Z6I8-2|C5orf24;ENSG00000181904|ENST00000394976|C5orf24	nc|nan|Q7Z6I8-2|C5orf24	nc|nan|Q7Z6I8-2|C5orf24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.28802490234375	2	509.288005	1016.56146	-0.11764	-5.9912E-05	-0.074056	-3.7716E-05	-0.19169	-9.7628E-05	509.2880424903752	13.478	0.67075	13.41	13.102	13.773	-0.067496					58	23	4	0	0	0	0.31681	1	465	465		18.373	4.467	1	390390			45437	7259	26211	26212	55199	55199					0.05383957329183886
STHELTSLLEK	11	Unmodified	_STHELTSLLEK_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.577392578125	3	419.894354	1256.66123	-0.33155	-0.00013921	1.2028	0.00050505	0.87125	0.00036583	419.89489182789663	15.122	0.2454	15.122	15.012	15.257	0					19	8	3	0	0	0	0.33146	1	938	938		6.6235	0	1	60324			45438	3688	26212	26213	55200	55200					0.043167301524590584
STHELTSLLEK	11	Unmodified	_STHELTSLLEK_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;nc|ENSG00000133030|Q6WCQ1-3|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.57720947265625	3	419.894354	1256.66123	-0.12844	-5.3929E-05	1.3355	0.00056076	1.207	0.00050683	419.894959516449	15.249	0.3293	15.139	14.982	15.312	-0.10981					21	11	2	0	0	0	0.33263	1	965	965		3.8459	0	1	74171			45439	3688	26212	26213	55201	55201					0.043167301524590584
STHGTFLNK	9	Unmodified	_STHGTFLNK_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.30133056640625	2	502.761623	1003.50869	0.24089	0.00012111	0.36059	0.00018129	0.60148	0.0003024	502.7617151222418	17.955	0.78897	17.955	17.69	18.479	0					78	26	4	0	0	0	0.00078897	1	1768	1768		125.04	86.862	1	900240			45440	5733	26213	26214	55202	55202					0.007079992663648227
STHGTFLNK	9	Unmodified	_STHGTFLNK_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7616882324219	2	502.761623	1003.50869	0.13769	6.9226E-05	0.49826	0.0002505	0.63595	0.00031973	502.7617208786484	18.103	0.86669	17.986	17.603	18.47	-0.11739					84	29	4	0	0	0	0.0066776	1	1869	1869		84.522	53.254	1	839000			45441	5733	26213	26214	55203	55203					0.007079992663648227
STHGTFLNK	9	Unmodified	_STHGTFLNK_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.7618103027344	2	502.761623	1003.50869	0.095127	4.7826E-05	0.54895	0.00027599	0.64408	0.00032382	502.7617918223832	18.136	0.89185	18.078	17.678	18.57	-0.058174					93	31	4	0	0	0	0.0028032	2	1864	1864;1911		103.82	65.648	1	812210			45442	5733	26213	26214	55204;55205	55204					0.007079992663648227
STHKGLRGV	9	Unmodified	_STHKGLRGV_					0	0	0			REV__ENST00000464178.1_1_1:38148756-38155336:-|nuORF	REV__ENST00000464178.1_1_1:38148756-38155336:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.26397705078125	2	477.777608	953.540663	0.058075	2.7747E-05	0.73122	0.00034936	0.7893	0.00037711	477.778138504433	17.907	0.42664	17.789	17.663	18.089	-0.11739					22	14	2	0	0	0	0.25622	1	1741	1741		7.2892	1.5288	1	35937	+		45443	21261	26214	26215	55206	55206					0.062034117401822186
STHKGLRGV	9	Unmodified	_STHKGLRGV_					0	0	0			REV__ENST00000464178.1_1_1:38148756-38155336:-|nuORF	REV__ENST00000464178.1_1_1:38148756-38155336:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	477.777608	953.540663	0.074957	3.5813E-05	0.95266	0.00045516	1.0276	0.00049097	477.77834947409724	17.939	0.46443	17.878	17.704	18.169	-0.060429	0.069773	0.00016216	NaN	7.2892	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41470	+		45444	21261	26214	26215							0.062034117401822186
STHVSSIKQ	9	Unmodified	_STHVSSIKQ_					0	0	0			REV__ENST00000578008.6_2_17:61787929-61788123:-|nuORF	REV__ENST00000578008.6_2_17:61787929-61788123:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7795715332031	2	493.766906	985.519259	0.34796	0.00017181	0.62546	0.00030883	0.97341	0.00048064	493.7671989013973	32.923	0.60791	32.978	32.786	33.394	0.055309					35	21	2	0	0	0	0.22188	1	6326	6326		20.454	0	1	354570	+		45445	22464	26215	26216	55207	55207					0.02591981920818398
STIAKPVL	8	Unmodified	_STIAKPVL_					0	0	0			REV__ENST00000467766.5_1_3:23853000-23929107:+|nuORF	REV__ENST00000467766.5_1_3:23853000-23929107:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.2369384765625	2	414.763104	827.511654	-0.35208	-0.00014603	0.24187	0.00010032	-0.11021	-4.5713E-05	414.76313846912336	38.655	0.89415	38.655	38.347	39.242	0					62	31	3	0	0	0	0.3366	1	8112	8112		18.135	0	1	865250	+		45446	21308	26216	26217	55208	55208					0.09099874391188223
STIATILREV	10	Unmodified	_STIATILREV_					0	0	0		ENST00000426620.5_1_3:38234779-38271948:+|nuORF;ENSG00000172939|ENST00000311806|OXSR1	ENST00000426620.5_1_3:38234779-38271948:+|nuORF	ENST00000426620.5_1_3:38234779-38271948:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.826904296875	2	551.826963	1101.63937	0.36544	0.00020166	-0.21122	-0.00011656	0.15422	8.5103E-05	551.8267870257613	47.197	0.48157	47.249	47.062	47.544	0.052574					31	17	2	0	0	0	0.015324	1	10722	10722		76.825	17.456	1	773730			45447	6677	26217	26218	55209	55209					0.09261970194552305
STIATILREV	10	Unmodified	_STIATILREV_					0	0	0		ENST00000426620.5_1_3:38234779-38271948:+|nuORF;ENSG00000172939|ENST00000311806|OXSR1	ENST00000426620.5_1_3:38234779-38271948:+|nuORF	ENST00000426620.5_1_3:38234779-38271948:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	551.826963	1101.63937	0.65674	0.00036241	-0.3963	-0.00021869	0.26044	0.00014372	551.8267436955895	47.285	0.46429	47.285	47.084	47.549	0	0.014915	0.00014344	NaN	76.825	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	853850			45448	6677	26217	26218							0.09261970194552305
STIATILREV	10	Unmodified	_STIATILREV_					0	0	0		ENST00000426620.5_1_3:38234779-38271948:+|nuORF;ENSG00000172939|ENST00000311806|OXSR1	ENST00000426620.5_1_3:38234779-38271948:+|nuORF	ENST00000426620.5_1_3:38234779-38271948:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	551.826963	1101.63937	1.0191	0.00056239	-0.92893	-0.00051261	0.09022	4.9786E-05	551.8264808358965	47.222	0.53447	47.277	47.064	47.598	0.054371	0.0062577	-0.00044439	NaN	76.825	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	767730			45449	6677	26217	26218							0.09261970194552305
STIDDTISK	9	Unmodified	_STIDDTISK_					0	0	0		nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2512512207031	2	490.250754	978.486955	0.25204	0.00012356	0.16177	7.931E-05	0.41381	0.00020287	490.2509546963259	26.838	0.62222	26.838	26.499	27.121	0					65	21	4	0	0	0	0.23612	1	4487	4487		18.373	0.22675	1	292700			45450	2488	26218	26219	55210	55210					-0.003148502728436142
STIDDTISK	9	Unmodified	_STIDDTISK_					0	0	0		nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2509765625	2	490.250754	978.486955	0.28225	0.00013837	0.05817	2.8518E-05	0.34042	0.00016689	490.25087026682183	26.817	0.59388	26.795	26.536	27.13	-0.02141					52	20	3	0	0	0	0.19905	1	4494	4494		23.79	0.64136	1	318820			45451	2488	26218	26219	55211	55211					-0.003148502728436142
STIDPAVSK	9	Unmodified	_STIDPAVSK_					0	0	0		ENSG00000106049|ENST00000265395|HIBADH;ENST00000428288.2_1_7:27565835-27702463:-|nuORF	ENSG00000106049|ENST00000265395|HIBADH	ENSG00000106049|ENST00000265395|HIBADH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2503662109375	2	459.250557	916.486562	0.029746	1.3661E-05	-0.068313	-3.1373E-05	-0.038568	-1.7712E-05	459.2505096461592	23.811	0.85287	23.738	23.474	24.327	-0.072559					48	28	2	0	0	0	0.14786	2	3550	3550;3600		31.268	10.815	1	216090			45452	2052	26219	26220	55212;55213	55212					0.024977747979505693
STIDPAVSK	9	Unmodified	_STIDPAVSK_					0	0	0		ENSG00000106049|ENST00000265395|HIBADH;ENST00000428288.2_1_7:27565835-27702463:-|nuORF	ENSG00000106049|ENST00000265395|HIBADH	ENSG00000106049|ENST00000265395|HIBADH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2505187988281	2	459.250557	916.486562	0.24401	0.00011206	-0.2919	-0.00013405	-0.047881	-2.1989E-05	459.25042096634587	23.83	0.77411	23.791	23.476	24.25	-0.038927					45	26	2	0	0	0	0.11201	1	3549	3549		36.506	4.2007	1	212690			45453	2052	26219	26220	55214	55214					0.024977747979505693
STIDPSGTRSK	11	Unmodified	_STIDPSGTRSK_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.79931640625	2	574.798934	1147.58332	-0.082177	-4.7235E-05	0.0060525	3.479E-06	-0.076124	-4.3756E-05	574.7990499729589	14.46	0.50963	14.46	14.249	14.759	0					39	17	3	0	0	0	0.38187	1	732	732		13.615	3.5409	1	133790			45454	3022	26220	26221	55215	55215					0.015427172870886352
STIDPSGTRSK	11	Unmodified	_STIDPSGTRSK_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.799072265625	2	574.798934	1147.58332	0.066211	3.8058E-05	-0.06851	-3.938E-05	-0.0022992	-1.3215E-06	574.7990242595995	14.59	0.64402	14.486	14.238	14.882	-0.10466					42	21	3	0	0	0	0.40332	1	784	784		10.8	0.72558	1	113830			45455	3022	26220	26221	55216	55216					0.015427172870886352
STIDPSGTRSK	11	Unmodified	_STIDPSGTRSK_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.7991333007812	2	574.798934	1147.58332	-0.083603	-4.8055E-05	0.22173	0.00012745	0.13813	7.9398E-05	574.7990705440296	14.604	0.55718	14.538	14.261	14.818	-0.066067					42	19	3	0	0	0	0.40332	1	797	797		10.8	0.72558	1	99568			45456	3022	26220	26221	55217	55217					0.015427172870886352
STIDPSGTRSK	11	Unmodified	_STIDPSGTRSK_					0	0	0		ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	ENSG00000121931|ENST00000369763|LRIF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	574.798934	1147.58332	-0.083603	-4.8055E-05	0.22173	0.00012745	0.13813	7.9398E-05	574.7990705440296	14.604	0.55718	14.538	14.261	14.818	-0.066067	0.043383	0.000171	NaN	13.615	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99568			45457	3022	26220	26221							0.015427172870886352
STIDWEGTSF	10	Unmodified	_STIDWEGTSF_					0	0	0		ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2890014648438	2	571.753661	1141.49277	0.15092	8.6289E-05	4.0806	0.0023331	4.2315	0.0024194	571.7554598317389	66.751	0.64529	66.737	66.278	66.923	-0.013588					44	23	3	0	0	0	0.31039	1	16710	16710		13.042	0	1	309760			45458	7049	26221	26222	55218	55218					-0.07231751761173655
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.8037109375	2	554.803488	1107.59242	0.30336	0.00016831	-0.1635	-9.0713E-05	0.13986	7.7594E-05	554.8041938278169	43.375	2.1134	43.375	43.008	45.121	0					206	77	5	0	0	0	4.8913000000000006E-24	6	9464	9464;9506;9548;9597;9640;9692		240.41	144.13	1	83517000			45459	1682	26222	26223	55219;55220;55221;55222;55223;55224	55219					0.0429311064342528
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.8035888671875	2	554.803488	1107.59242	0.47388	0.00026291	-0.22514	-0.00012491	0.24875	0.00013801	554.8041904065815	43.127	2.0482	43.205	42.883	44.931	0.077515					194	75	5	0	0	0	4.8913000000000006E-24	7	9388	9388;9435;9450;9485;9535;9580;9625		240.41	147.59	1	90327000			45460	1682	26222	26223	55225;55226;55227;55228;55229;55230;55231	55225					0.0429311064342528
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2578735351562	2	554.803488	1107.59242	0.5243	0.00029088	-0.23466	-0.00013019	0.28964	0.00016069	554.8029110362693	45.11	0.79089	45.179	44.952	45.743	0.068573					43	27	2	0	0	0	0.0063009	1	10104	10104		99.755	61.781	1	166120			45461	1682	26222	26223	55232	55232					0.0429311064342528
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.8037109375	2	554.803488	1107.59242	0.18686	0.00010367	0.030924	1.7157E-05	0.21779	0.00012083	554.8043520444472	43.094	2.0224	43.178	42.845	44.868	0.083996					197	74	5	0	0	0	4.8913000000000006E-24	6	9373	9373;9419;9466;9510;9553;9606		240.41	147.59	1	87637000			45462	1682	26222	26223	55233;55234;55235;55236;55237;55238	55233					0.0429311064342528
STIEYVIQR	9	Unmodified	_STIEYVIQR_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2581176757812	2	554.803488	1107.59242	0.39021	0.00021649	0.26278	0.00014579	0.653	0.00036229	554.8034202740475	45.578	0.47821	45.643	45.274	45.753	0.065048					25	17	2	0	0	0	0.0080395	1	10084	10084		92.653	48.795	1	217130			45463	1682	26222	26223	55239	55239					0.0429311064342528
STIFTLDVYK	10	Unmodified	_STIFTLDVYK_					0	0	0		ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8214111328125	2	593.821347	1185.62814	0.46761	0.00027767	0.31299	0.00018586	0.7806	0.00046354	593.8211785291987	63.191	0.6772	63.191	62.93	63.607	0					58	24	4	0	0	0	8.7593E-06	3	15622	15622;15676;15710		151.48	97.647	1	917640			45464	8115	26223	26224	55240;55241;55242	55240					0.04275148100418846
STIFTLDVYK	10	Unmodified	_STIFTLDVYK_					0	0	0		ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8211669921875	2	593.821347	1185.62814	0.51835	0.00030781	0.49789	0.00029566	1.0162	0.00060347	593.8211122948687	63.024	0.65867	63.119	62.905	63.564	0.095722					63	23	4	0	0	0	2.7564E-05	2	15587	15587;15659		139.78	94.082	1	949680			45465	8115	26223	26224	55243;55244	55243					0.04275148100418846
STIFTLDVYK	10	Unmodified	_STIFTLDVYK_					0	0	0		ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	ENSG00000198743|ENST00000381151|SLC5A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.821533203125	2	593.821347	1185.62814	0.41935	0.00024902	-0.055333	-3.2858E-05	0.36402	0.00021616	593.8211387919199	63.162	0.85909	63.154	62.705	63.564	-0.0085526					59	31	3	0	0	0	8.7593E-06	1	15621	15621		151.48	97.647	1	950800			45466	8115	26223	26224	55245	55245					0.04275148100418846
STIFYYVQK	9	Unmodified	_STIFYYVQK_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.80322265625	2	574.802957	1147.59136	0.6583	0.00037839	-0.072898	-4.1902E-05	0.5854	0.00033649	574.8029298189114	50.717	1.129	50.717	50.407	51.536	0					119	41	4	0	0	0	9.4362E-24	4	11785	11744;11785;11827;11881		231.69	160.56	1	10034000			45467	1420	26224	26225	55246;55247;55248;55249	55247					0.02346896274525534
STIFYYVQK	9	Unmodified	_STIFYYVQK_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.8031616210938	2	574.802957	1147.59136	0.75238	0.00043247	-0.18938	-0.00010886	0.563	0.00032361	574.8028478249074	50.702	1.1901	50.747	50.403	51.593	0.044891					128	43	4	0	0	0	1.0663E-16	4	11779	11732;11779;11830;11884		214.41	143.28	1	9957100			45468	1420	26224	26225	55250;55251;55252;55253	55251					0.02346896274525534
STIFYYVQK	9	Unmodified	_STIFYYVQK_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.8034057617188	2	574.802957	1147.59136	0.67116	0.00038578	-0.067813	-3.8979E-05	0.60335	0.00034681	574.8029264686716	50.78	1.1589	50.79	50.402	51.561	0.0095634					139	43	5	0	0	0	9.4362E-24	5	11836	11745;11789;11836;11888;11957		231.69	160.56	1	9608100			45469	1420	26224	26225	55254;55255;55256;55257;55258	55256					0.02346896274525534
STIGFKLPNHR	11	Unmodified	_STIGFKLPNHR_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;EPB41L3|p.K943Nfs*9|1|0.39|ENSG00000082397|chr18:5397070-5397070|T/-|frameshift_variant;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3;EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.2065124511719	3	423.906928	1268.69895	-0.83767	-0.00035509	-1.2853	-0.00054485	-2.123	-0.00089994	423.90647815915827	34.758	0.58636	34.836	34.474	35.06	0.077377					33	20	2	0	0	0	0.33207	1	6916	6916		3.3557	2.5792	1	135800			45470	1142;1200;12336	26225	26226	55259	55259					0.07535285928588564
STIGPEGVHQK	11	Unmodified	_STIGPEGVHQK_					0	0	0		nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-8|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.8040771484375	2	576.80402	1151.59349	0.070086	4.0426E-05	-0.041226	-2.3779E-05	0.02886	1.6647E-05	576.8040086400563	18.606	0.78997	18.606	18.216	19.006	0					82	27	4	0	0	0	0.0090378	3	1977	1928;1977;2033		71.708	50.171	1	326940			45471	12777	26226	26227	55260;55261;55262	55261					0.02375325012326357
STIGPEGVHQK	11	Unmodified	_STIGPEGVHQK_					0	0	0		nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-8|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8040161132812	2	576.80402	1151.59349	0.14782	8.5262E-05	-0.054159	-3.1239E-05	0.093659	5.4023E-05	576.8039753246078	18.708	0.90166	18.591	18.242	19.144	-0.11739					83	31	4	0	0	0	0.069058	3	2020	1972;2020;2069		47.732	34.69	1	350370			45472	12777	26226	26227	55263;55264;55265	55264					0.02375325012326357
STIGPEGVHQK	11	Unmodified	_STIGPEGVHQK_					0	0	0		nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-8|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8038940429688	2	576.80402	1151.59349	-0.094933	-5.4758E-05	0.14471	8.3471E-05	0.04978	2.8713E-05	576.8041095878046	18.704	0.79905	18.646	18.313	19.112	-0.058172					82	27	4	0	0	0	0.0016102	3	2014	1962;2014;2063		88.364	66.774	1	373850			45473	12777	26226	26227	55266;55267;55268	55267					0.02375325012326357
STIGQTEKKYV	11	Unmodified	_STIGQTEKKYV_					0	0	0			REV__nc|ENSG00000128513|Q9NUX5-2|POT1	REV__nc|ENSG00000128513|Q9NUX5-2|POT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5626525878906	3	418.562715	1252.66632	-0.068	-2.8462E-05	-0.022668	-9.488E-06	-0.090668	-3.795E-05	418.5626044509933	29.482	0.52396	29.495	29.3	29.824	0.013475					42	17	3	0	0	0	0.41288	1	5305	5305		5.1984	1.0818	1	274260	+		45474	15373	26227	26228	55269	55269					0.05009034015074576
STIGVDGSVYK	11	Unmodified	_STIGVDGSVYK_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.816162109375	2	563.292953	1124.57135	0.67517	0.00038032	-0.2934	-0.00016527	0.38177	0.00021505	563.2922968550075	37.275	0.75451	37.275	37.013	37.767	0					56	26	3	0	0	0	0.15424	1	7669	7669		66.683	46.268	1	825910			45475	5405	26228	26229	55270	55270					0.014051005439114306
STIGVDGSVYK	11	Unmodified	_STIGVDGSVYK_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.2926025390625	2	563.292953	1124.57135	0.43289	0.00024384	-0.068633	-3.8661E-05	0.36425	0.00020518	563.292514184037	37.161	0.76074	37.248	36.98	37.741	0.08741					70	27	4	0	0	0	0.0011409	1	7643	7643		94.909	69.918	1	733630			45476	5405	26228	26229	55271	55271					0.014051005439114306
STIGVDGSVYK	11	Unmodified	_STIGVDGSVYK_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.8162231445312	2	563.292953	1124.57135	0.43352	0.0002442	0.089338	5.0323E-05	0.52286	0.00029452	563.2925846573376	37.15	0.61909	37.243	36.98	37.599	0.093018					51	22	3	0	0	0	0.082134	1	7621	7621		80.896	51.814	1	762710			45477	5405	26228	26229	55272	55272					0.014051005439114306
STILLRDYSQF	11	Unmodified	_STILLRDYSQF_					0	0	0			REV__ENST00000446265.3_1:149648157-149648721:+|nuORF	REV__ENST00000446265.3_1:149648157-149648721:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.255126953125	3	448.238232	1341.69287	0.029763	1.3341E-05	0.076928	3.4482E-05	0.10669	4.7823E-05	448.2377417654231	41.334	0.16085	41.424	41.35	41.511	0.090248					10	5	3	0	0	0	0.33236	1	8910	8910		4.4062	0.28952	1	175340	+		45478	17953	26229	26230	55273	55273					0.035687229064023995
STILRGIKA	9	Unmodified	_STILRGIKA_					0	0	0		ENST00000562017.1_1_16:56642884-56643094:+|nuORF	ENST00000562017.1_1_16:56642884-56643094:+|nuORF	ENST00000562017.1_1_16:56642884-56643094:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2898864746094	2	479.805834	957.597115	0.077296	3.7087E-05	-0.0046785	-2.2448E-06	0.072618	3.4843E-05	479.80570483402727	18.087	0.40207	18.087	17.867	18.269	0					27	13	3	0	0	0	0.26188	1	1858	1858		1.6526	1.6526	1	70093			45479	11917	26230	26231	55274	55274					0.11662039576845018
STINSIKKVLK	11	Unmodified	_STINSIKKVLK_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.93060302734375	3	410.930851	1229.77072	0.22334	9.1778E-05	-0.64557	-0.00026528	-0.42223	-0.00017351	410.9305314809264	30.38	0.53415	30.408	30.159	30.693	0.027946					40	18	3	0	0	0	0.40539	1	5537	5537		10.527	5.0042	1	207060			45480	7973	26231	26232	55275	55275					0.16502780562450425
STINSIKKVLK	11	Unmodified	_STINSIKKVLK_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.9306335449219	3	410.930851	1229.77072	-0.16757	-6.8861E-05	-0.29535	-0.00012137	-0.46292	-0.00019023	410.9306609795328	30.372	0.50445	30.399	30.134	30.638	0.027157					37	17	3	0	0	0	0.432	1	5547	5547		7.0341	3.6784	1	276150			45481	7973	26231	26232	55276	55276					0.16502780562450425
STINSIKKVLK	11	Unmodified	_STINSIKKVLK_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	410.930851	1229.77072	0.020934	8.6024E-06	-0.4235	-0.00017403	-0.40257	-0.00016543	410.93059960355254	30.327	0.4781	30.327	30.141	30.619	0	-0.05091	4.23E-05	NaN	10.527	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234030			45482	7973	26231	26232							0.16502780562450425
STIPPELVKQK	11	Unmodified	_STIPPELVKQK_					0	0	0		ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.9150390625	3	413.915089	1238.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.839	1	32.839	32.339	33.339	0								0	0	0	0.21172	1	6303	6303		31.462	13.122	1				45483	737	26232	26233	55277	55277					0.11362501291455374
STIPPELVKQK	11	Unmodified	_STIPPELVKQK_					0	0	0		ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.9150085449219	3	413.915089	1238.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.534	1	32.59	32.09	33.09	0.055309								0	0	0	0.23405	1	6210	6210		19.615	8.55	1				45484	737	26232	26233	55278	55278					0.11362501291455374
STIPPELVKQK	11	Unmodified	_STIPPELVKQK_					0	0	0		ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.91510009765625	3	413.915089	1238.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.708	1	32.763	32.263	33.263	0.055309								0	0	0	0.24215	1	6263	6263		23.016	8.1777	1				45485	737	26232	26233	55279	55279					0.11362501291455374
STIPPELVKQK	11	Unmodified	_STIPPELVKQK_					0	0	0		ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	ENSG00000058729|ENST00000283109|RIOK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.91497802734375	3	413.915089	1238.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.74	1	32.795	32.295	33.295	0.054371								0	0	0	0.22318	1	6268	6268		30.354	14.816	1				45486	737	26232	26233	55280	55280					0.11362501291455374
STISLTSKN	9	Unmodified	_STISLTSKN_					0	0	0		ENSG00000173157|ENST00000389420|ADAMTS20;nc|ENSG00000173157|P59510|ADAMTS20	ENSG00000173157|ENST00000389420|ADAMTS20	ENSG00000173157|ENST00000389420|ADAMTS20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.2914733886719	2	475.761289	949.508025	-0.19745	-9.3937E-05	-0.058827	-2.7988E-05	-0.25627	-0.00012192	475.76124848315783	12.331	0.17775	12.263	12.167	12.345	-0.06806					8	5	2	0	0	0	0.26099	1	93	93		2.9952	0.69251	1	35397			45487	6696	26233	26234	55281	55281					0.03125159826663548
STITGVMDK	9	Oxidation (M)	_STITGVM(Oxidation (M))DK_		STITGVM(1)DK		STITGVM(140)DK	0	0	1		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2421569824219	2	484.241875	966.469197	0.22723	0.00011004	0.3198	0.00015486	0.54703	0.0002649	484.2420071463195	20.258	0.43711	20.258	19.986	20.423	0					52	16	4	0	0	0	8.0996E-05	2	2481	2438;2481		143.91	40.202	1	3339300			45488	4787	26234	26235	55282;55283	55283		597			-0.015378887993506396
STITGVMDK	9	Oxidation (M)	_STITGVM(Oxidation (M))DK_		STITGVM(1)DK		STITGVM(140)DK	0	0	1		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2422180175781	2	484.241875	966.469197	0.31225	0.0001512	0.15838	7.6697E-05	0.47063	0.0002279	484.2419620788707	20.594	1.2846	20.594	20.395	21.68	0					135	44	5	0	0	0	8.0996E-05	4	2576	2529;2576;2628;2670		143.91	38.87	1	3576800			45489	4787	26234	26235	55284;55285;55286;55287	55285		597			-0.015378887993506396
STITGVMDK	9	Oxidation (M)	_STITGVM(Oxidation (M))DK_		STITGVM(1)DK		STITGVM(190)DK	0	0	1		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2422180175781	2	484.241875	966.469197	0.44089	0.0002135	0.21883	0.00010597	0.65972	0.00031947	484.24191623560165	20.455	0.479	20.345	20.016	20.495	-0.11003					57	17	4	0	0	0	4.1496E-11	3	2543	2495;2543;2587		189.73	66.281	1	3494300			45490	4787	26234	26235	55288;55289;55290	55289		597			-0.015378887993506396
STITGVMDK	9	Oxidation (M)	_STITGVM(Oxidation (M))DK_		STITGVM(1)DK		STITGVM(160)DK	0	0	1		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2422180175781	2	484.241875	966.469197	0.52818	0.00025577	-0.093447	-4.5251E-05	0.43474	0.00021052	484.24184955503836	20.817	1.2994	20.707	20.495	21.795	-0.11003					138	45	5	0	0	0	6.549E-06	3	2674	2630;2674;2761		155.95	32.503	1	4014700			45491	4787	26234	26235	55291;55292;55293	55292		597			-0.015378887993506396
STITGVMDK	9	Oxidation (M)	_STITGVM(Oxidation (M))DK_		STITGVM(1)DK		STITGVM(170)DK	0	0	1		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.24212646484375	2	484.241875	966.469197	0.60923	0.00029501	0.10127	4.9037E-05	0.71049	0.00034405	484.24182362514216	20.345	0.53962	20.293	19.933	20.472	-0.052912					56	19	4	0	0	0	2.973E-07	3	2501	2459;2501;2554		168.54	34.487	1	3574500			45492	4787	26234	26235	55294;55295;55296	55295		597			-0.015378887993506396
STITGVMDK	9	Oxidation (M)	_STITGVM(Oxidation (M))DK_		STITGVM(1)DK		STITGVM(140)DK	0	0	1		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.2421875	2	484.241875	966.469197	0.50985	0.00024689	-0.052984	-2.5657E-05	0.45686	0.00022123	484.2418742674422	20.684	1.4293	20.631	20.472	21.902	-0.052912					152	50	6	0	0	0	8.0996E-05	3	2604	2604;2652;2695		143.91	26.843	1	3829100			45493	4787	26234	26235	55297;55298;55299	55297		597			-0.015378887993506396
STITKIHSK	9	Unmodified	_STITKIHSK_					0	0	0		SECISBP2L|p.V789Sfs*2|1|0.21|ENSG00000138593|chr15:48999871-48999872|-/T|frameshift_variant;nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L	SECISBP2L|p.V789Sfs*2|1|0.21|ENSG00000138593|chr15:48999871-48999872|-/T|frameshift_variant	SECISBP2L|p.V789Sfs*2|1|0.21|ENSG00000138593|chr15:48999871-48999872|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2835998535156	2	507.800749	1013.58694	-0.018115	-9.1987E-06	-0.91251	-0.00046337	-0.93062	-0.00047257	507.7999406938582	13.269	0.66914	13.269	12.815	13.484	0					41	23	3	0	0	0	0.19888	1	359	359		32.037	18.131	1	349040			45494	4159	26235	26236	55300	55300					0.08069431851617992
STITKIHSK	9	Unmodified	_STITKIHSK_					0	0	0		SECISBP2L|p.V789Sfs*2|1|0.21|ENSG00000138593|chr15:48999871-48999872|-/T|frameshift_variant;nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L	SECISBP2L|p.V789Sfs*2|1|0.21|ENSG00000138593|chr15:48999871-48999872|-/T|frameshift_variant	SECISBP2L|p.V789Sfs*2|1|0.21|ENSG00000138593|chr15:48999871-48999872|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.8006591796875	2	507.800749	1013.58694	-0.060009	-3.0472E-05	-0.64855	-0.00032933	-0.70856	-0.00035981	507.8001925900015	13.307	0.6491	13.208	12.924	13.573	-0.099291					49	22	4	0	0	0	0.0047555	1	388	388		88.364	60.735	1	337060			45495	4159	26235	26236	55301	55301					0.08069431851617992
STITKIHSK	9	Unmodified	_STITKIHSK_					0	0	0		SECISBP2L|p.V789Sfs*2|1|0.21|ENSG00000138593|chr15:48999871-48999872|-/T|frameshift_variant;nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L	SECISBP2L|p.V789Sfs*2|1|0.21|ENSG00000138593|chr15:48999871-48999872|-/T|frameshift_variant	SECISBP2L|p.V789Sfs*2|1|0.21|ENSG00000138593|chr15:48999871-48999872|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2835388183594	2	507.800749	1013.58694	-0.10979	-5.575E-05	-0.45821	-0.00023268	-0.568	-0.00028843	507.80050107118007	13.328	0.57881	13.26	13.022	13.6	-0.067495					45	20	4	0	0	0	0.074421	1	382	382		67.081	47.824	1	297830			45496	4159	26235	26236	55302	55302					0.08069431851617992
STITRREG	8	Unmodified	_STITRREG_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7663269042969	2	460.251423	918.488293	-0.22305	-0.00010266	1.3059	0.00060105	1.0829	0.00049839	460.25403681954765	13.376	0.33752	13.308	13.022	13.359	-0.067495					12	11	2	0	0	0	0.344	1	386	386		2.5775	0	1	16075	+		45497	18137	26236	26237	55303	55303					0.025788286065676402
STIVELGSIF	10	Unmodified	_STIVELGSIF_					0	0	0		nc|ENSG00000162236|Q13190-3|STX5;nc|ENSG00000162236|Q13190-2|STX5;nc|ENSG00000162236|Q13190-4|STX5;ENSG00000162236|ENST00000294179|STX5	nc|ENSG00000162236|Q13190-3|STX5	nc|ENSG00000162236|Q13190-3|STX5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7634887695312	2	533.294965	1064.57538	0.66326	0.00035371	1.5728	0.00083879	2.2361	0.0011925	533.2956996863825	64.439	0.37247	64.429	64.289	64.662	-0.0095291					17	13	2	0	0	0	0.26638	1	16001	16001		30.637	3.7529	1	109120			45498	5554	26237	26238	55304	55304					0.04567190037596447
STIWAHHF	8	Unmodified	_STIWAHHF_					0	0	0			REV__ENST00000507004.1_1_5:43298999-43313499:-|nuORF	REV__ENST00000507004.1_1_5:43298999-43313499:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2793884277344	2	499.745776	997.477	0.027615	1.38E-05	-0.84197	-0.00042077	-0.81435	-0.00040697	499.74524936419937	59.945	0.3623	59.945	59.702	60.065	0					20	12	2	0	0	0	0.32778	1	14560	14560		14.582	2.0501	1	396360	+		45499	19993	26238	26239	55305	55305					-0.021839486969156496
STIWAHHF	8	Unmodified	_STIWAHHF_					0	0	0			REV__ENST00000507004.1_1_5:43298999-43313499:-|nuORF	REV__ENST00000507004.1_1_5:43298999-43313499:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	499.745776	997.477	-0.1125	-5.6219E-05	-0.81203	-0.00040581	-0.92453	-0.00046203	499.7451778116984	59.793	0.38602	59.888	59.661	60.047	0.095093	-0.0062248	0.00012683	NaN	14.582	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294670	+		45500	19993	26238	26239							-0.021839486969156496
STKDQYPYLK	10	Unmodified	_STKDQYPYLK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.82177734375	2	621.821878	1241.6292	-0.18077	-0.0001124	0.64907	0.00040361	0.4683	0.0002912	621.8222013391076	28.243	0.77903	28.239	27.763	28.542	-0.0042572					60	27	3	0	0	0	0.29334	1	4850	4850		23.801	18.504	1	292590			45501	4787	26239	26240	55306	55306					0.018053624693038728
STKDQYPYLK	10	Unmodified	_STKDQYPYLK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.883544921875	3	414.883677	1241.6292	0.026234	1.0884E-05	-0.0043635	-1.8103E-06	0.02187	9.0737E-06	414.88361086099115	28.23	1.1827	28.226	27.632	28.815	-0.0042572					113	41	5	0	0	0	0.19037	1	4946	4946		33.821	20.303	1	933080			45502	4787	26239	26240	55307	55307					0.018053624693038728
STKDQYPYLK	10	Unmodified	_STKDQYPYLK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8833923339844	3	414.883677	1241.6292	-0.12847	-5.3302E-05	0.24797	0.00010288	0.1195	4.9577E-05	414.8837206793594	28.175	1.2369	28.175	27.539	28.776	0.0004673					113	43	4	0	0	0	0.20968	2	4878	4878;4921		31.462	17.943	1	936300			45503	4787	26239	26240	55308;55309	55308					0.018053624693038728
STKFHEDIKK	10	Unmodified	_STKFHEDIKK_					0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5592346191406	3	411.559305	1231.65609	0.33587	0.00013823	-0.68695	-0.00028272	-0.35108	-0.00014449	411.5592875969908	35.92	1.9217	36.006	35.671	37.592	0.086246					186	69	5	0	0	0	0.27337	1	7334	7334		14.957	0	1	16899000	+		45504	15937	26240	26241	55310	55310					0.04952471080491705
STKIHLSLS	9	Unmodified	_STKIHLSLS_					0	0	0			REV__ENSG00000183960|ENST00000328405|KCNH8	REV__ENSG00000183960|ENST00000328405|KCNH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7513427734375	2	493.287474	984.560395	0.7994	0.00039433	-0.38208	-0.00018847	0.41732	0.00020586	493.2872835790718	33.607	0.49916	33.674	33.405	33.904	0.06636					26	17	2	0	0	0	0.20651	1	6575	6575		26.884	2.8631	1	195210	+		45505	18295	26241	26242	55311	55311					0.06749742960300864
STKKGARR	8	Unmodified	_STKKGARR_					0	0	0			REV__ENST00000554266.5_1_12:25348248-25356752:+|nuORF	REV__ENST00000554266.5_1_12:25348248-25356752:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2774963378906	2	452.277775	902.540997	0.27938	0.00012636	-0.18661	-8.4402E-05	0.092769	4.1958E-05	452.277560369028	82.341	0.72881	82.321	82.113	82.842	-0.020584					52	28	3	0	0	0	0.46491	1	21542	21542		0.69038	0	1	530040	+		45506	22230	26242	26243	55312	55312					0.08582831460034868
STKKGARR	8	Unmodified	_STKKGARR_					0	0	0			REV__ENST00000554266.5_1_12:25348248-25356752:+|nuORF	REV__ENST00000554266.5_1_12:25348248-25356752:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	452.277775	902.540997	0.27711	0.00012533	-0.2571	-0.00011628	0.02001	9.05E-06	452.2775396386108	82.349	0.75782	82.349	82.024	82.782	0	0.014571	-0.0001709	NaN	0.69038	46	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427800	+		45507	22230	26242	26243							0.08582831460034868
STKKGARR	8	Unmodified	_STKKGARR_					0	0	0			REV__ENST00000554266.5_1_12:25348248-25356752:+|nuORF	REV__ENST00000554266.5_1_12:25348248-25356752:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	452.277775	902.540997	0.13846	6.2625E-05	0.23305	0.0001054	0.37152	0.00016803	452.2778113615096	82.264	0.82138	82.333	82.018	82.84	0.068993	-0.0011521	0.00027247	NaN	0.69038	56	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359450	+		45508	22230	26242	26243							0.08582831460034868
STKKGARR	8	Unmodified	_STKKGARR_					0	0	0			REV__ENST00000554266.5_1_12:25348248-25356752:+|nuORF	REV__ENST00000554266.5_1_12:25348248-25356752:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	452.277775	902.540997	0.27938	0.00012636	-0.18661	-8.4402E-05	0.092769	4.1958E-05	452.277560369028	82.341	0.72881	82.321	82.113	82.842	-0.020584	-0.013419	-0.00010714	NaN	0.69038	52	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	530040	+		45509	22230	26242	26243							0.08582831460034868
STKVDLQNLVE	11	Unmodified	_STKVDLQNLVE_					0	0	0			REV__ENSG00000115207|ENST00000264720|GTF3C2	REV__ENSG00000115207|ENST00000264720|GTF3C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.8946228027344	3	415.894354	1244.66123	-0.039888	-1.6589E-05	0.40009	0.00016639	0.3602	0.0001498	415.89463140698007	14.62	0.6373	14.515	14.105	14.742	-0.10466					43	21	3	0	0	0	0.3331	1	798	798		2.2527	0.51045	1	115600	+		45510	14865	26243	26244	55313	55313					0.048687301524296345
STKVDLQNLVE	11	Unmodified	_STKVDLQNLVE_					0	0	0			REV__ENSG00000115207|ENST00000264720|GTF3C2	REV__ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	415.894354	1244.66123	-0.33927	-0.0001411	1.0122	0.00042098	0.67296	0.00027988	415.8947007399873	14.477	0.65416	14.477	14.164	14.819	0	-0.027849	0.00033824	NaN	3.8459	36	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97340	+		45511	14865	26243	26244							0.048687301524296345
STKWPDWLIPR	11	Unmodified	_STKWPDWLIPR_					0	0	0			REV__ENST00000433214.2_1_10:88730503-88742973:+|nuORF	REV__ENST00000433214.2_1_10:88730503-88742973:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7558898925781	3	466.922467	1397.74557	-0.1666	-7.7791E-05	-1.212	-0.00056589	-1.3786	-0.00064368	467.25694540011796	22.518	0.65803	22.518	22.278	22.936	0					47	22	3	0	0	0	0.33321	1	3232	3232		0.84494	0	1	179130	+		45512	20964	26244	26245	55314	55314					0.0626072575987564
STKWPDWLIPR	11	Unmodified	_STKWPDWLIPR_					0	0	0			REV__ENST00000433214.2_1_10:88730503-88742973:+|nuORF	REV__ENST00000433214.2_1_10:88730503-88742973:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2563171386719	3	466.922467	1397.74557	-0.12414	-5.7963E-05	-1.3083	-0.00061086	-1.4324	-0.00066882	467.2568107562885	22.625	0.61082	22.537	22.272	22.883	-0.087608					45	21	3	0	0	0	0.41517	1	3215	3215		9.2438	4.8376	1	154770	+		45513	20964	26244	26245	55315	55315					0.0626072575987564
STKYRTEK	8	Unmodified	_STKYRTEK_					0	0	0		ENST00000460731.5_1_7:77166863-77213036:+|nuORF;PTPN12|p.F450Lfs*7|1|0.28|ENSG00000127947|chr7:77627026-77627026|T/-|frameshift_variant;ENSG00000127947|ENST00000248594|PTPN12	ENST00000460731.5_1_7:77166863-77213036:+|nuORF	ENST00000460731.5_1_7:77166863-77213036:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7747802734375	2	506.774731	1011.53491	0.30088	0.00015248	-0.16254	-8.2373E-05	0.13834	7.0107E-05	506.7745952961698	17.375	0.63233	17.315	17.103	17.736	-0.060429					47	21	3	0	0	0	0.34226	1	1648	1648		10.074	0	1	241360			45514	3341	26245	26246	55316	55316					0.029602684378460253
STLCQVLTL	9	Unmodified	_STLCQVLTL_					0	0	0			REV__ENSG00000182747|ENST00000331858|SLC35D3	REV__ENSG00000182747|ENST00000331858|SLC35D3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2872619628906	2	489.270435	976.526318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.435	1	77.403	76.903	77.903	-0.031334								0	0	0	0.13597	1	19972	19972		37.974	7.3375	1		+		45515	18213	26246	26247	55317	55317					0.03711578477009425
STLDGVSRK	9	Unmodified	_STLDGVSRK_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7763977050781	2	481.766906	961.519259	-0.053588	-2.5817E-05	0.73417	0.0003537	0.68058	0.00032788	481.76768476325594	15.437	0.52707	15.437	15.289	15.816	0					49	17	4	0	0	0	0.2869	1	1006	1006		10.8	10.8	1	78740			45516	5733	26247	26248	55318	55318					0.03695981920805025
STLDGVSRK	9	Unmodified	_STLDGVSRK_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.77655029296875	2	481.766906	961.519259	0.030405	1.4648E-05	0.36969	0.0001781	0.40009	0.00019275	481.76765838295586	15.547	0.61193	15.438	15.259	15.871	-0.10981					45	20	4	0	0	0	0.26278	1	1043	1043		14.405	14.405	1	100830			45517	5733	26247	26248	55319	55319					0.03695981920805025
STLDGVSRK	9	Unmodified	_STLDGVSRK_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7767639160156	2	481.766906	961.519259	0.023838	1.1484E-05	0.16175	7.7925E-05	0.18559	8.941E-05	481.76750011471063	15.535	0.61516	15.47	15.275	15.89	-0.064413					46	20	4	0	0	0	0.26278	1	1037	1037		14.405	14.405	1	101760			45518	5733	26247	26248	55320	55320					0.03695981920805025
STLDGVSRK	9	Unmodified	_STLDGVSRK_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	481.766906	961.519259	-0.053588	-2.5817E-05	0.73417	0.0003537	0.68058	0.00032788	481.76768476325594	15.437	0.52707	15.437	15.289	15.816	0	-0.011294	0.00026632	NaN	14.405	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78740			45519	5733	26247	26248							0.03695981920805025
STLDGVSRK	9	Unmodified	_STLDGVSRK_					0	0	0		ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	ENSG00000163798|ENST00000326019|SLC4A1AP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	481.766906	961.519259	0.030405	1.4648E-05	0.36969	0.0001781	0.40009	0.00019275	481.76765838295586	15.547	0.61193	15.438	15.259	15.871	-0.10981	-0.01064	-8.4867E-05	NaN	14.405	45	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100830			45520	5733	26247	26248							0.03695981920805025
STLDIVLANK	10	Unmodified	_STLDIVLANK_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.31396484375	2	537.313689	1072.61282	0.65361	0.00035119	-0.45546	-0.00024472	0.19815	0.00010647	537.3134504131467	51.246	0.75171	51.246	50.896	51.648	0					80	27	4	0	0	0	1.4303E-20	2	11935	11935;11985		216.57	112.82	1	2561800			45521	6169	26248	26249	55321;55322	55321					0.0794228130321244
STLDIVLANK	10	Unmodified	_STLDIVLANK_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.3138427734375	2	537.313689	1072.61282	0.43184	0.00023203	-0.21274	-0.00011431	0.21911	0.00011773	537.3135734667718	51.235	0.63585	51.282	51.011	51.647	0.046574					67	23	4	0	0	0	3.0264E-09	2	11968	11918;11968		176.43	94.537	1	2814800			45522	6169	26248	26249	55323;55324	55324					0.0794228130321244
STLDIVLANK	10	Unmodified	_STLDIVLANK_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.3139038085938	2	537.313689	1072.61282	0.59925	0.00032199	-0.40261	-0.00021633	0.19664	0.00010566	537.3135233034618	51.338	0.94778	51.347	50.965	51.913	0.0095634					91	35	4	0	0	0	1.4982E-14	2	11936	11936;11988		201.57	97.82	1	2504100			45523	6169	26248	26249	55325;55326	55325					0.0794228130321244
STLDLSASVS	10	Unmodified	_STLDLSASVS_					0	0	0		ENST00000375203.7_1_6:32085774-32086621:-|nuORF	ENST00000375203.7_1_6:32085774-32086621:-|nuORF	ENST00000375203.7_1_6:32085774-32086621:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2510986328125	2	490.250754	978.486955	0.44354	0.00021744	-0.14245	-6.9837E-05	0.30108	0.00014761	490.25078819854923	26.848	0.56523	26.837	26.595	27.16	-0.01156					49	19	3	0	0	0	0.31867	1	4497	4497		18.146	3.741	1	288410			45524	9909	26249	26250	55327	55327					-0.003148502728549829
STLEERTFR	9	Unmodified	_STLEERTFR_					0	0	0		ENSG00000181418|ENST00000421952|DDN	ENSG00000181418|ENST00000421952|DDN	ENSG00000181418|ENST00000421952|DDN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.2445068359375	2	569.796195	1137.57784	-0.079504	-4.5301E-05	0.5546	0.00031601	0.47509	0.00027071	569.7963499434227	13.7	0.36537	13.7	13.597	13.962	0					19	12	2	0	0	0	0.26031	1	530	530		3.5965	1.019	1	122930			45525	7234	26250	26251	55328	55328					0.01455038495282679
STLESIYQR	9	Unmodified	_STLESIYQR_					0	0	0		ENST00000555641.1_1_12:57499966-57502061:-|nuORF;ENSG00000166888|ENST00000300134|STAT6	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.794921875	2	548.785296	1095.55604	0.071345	3.9153E-05	-1.8131	-0.00099499	-1.7417	-0.00095584	548.7840718847071	39.544	0.40144	39.544	39.268	39.669	0					30	14	3	0	0	0	0.0023895	1	8382	8382		107.1	34.132	1	320640			45526	6128	26251	26252	55329	55329					0.012082337467290927
STLESIYQR	9	Unmodified	_STLESIYQR_					0	0	0		ENST00000555641.1_1_12:57499966-57502061:-|nuORF;ENSG00000166888|ENST00000300134|STAT6	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7951049804688	2	548.785296	1095.55604	0.34264	0.00018803	-1.9589	-0.001075	-1.6163	-0.00088701	548.7842352476946	39.369	0.35107	39.462	39.226	39.577	0.09267					21	12	2	0	0	0	0.0013683	1	8332	8332		118.07	32.427	1	481010			45527	6128	26251	26252	55330	55330					0.012082337467290927
STLESIYQR	9	Unmodified	_STLESIYQR_					0	0	0		ENST00000555641.1_1_12:57499966-57502061:-|nuORF;ENSG00000166888|ENST00000300134|STAT6	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7950439453125	2	548.785296	1095.55604	0.51452	0.00028236	-2.0862	-0.0011449	-1.5717	-0.00086252	548.784178122759	39.357	0.30263	39.456	39.262	39.565	0.099407					17	10	2	0	0	0	0.0037449	1	8314	8314		96.367	29.91	1	406590			45528	6128	26251	26252	55331	55331					0.012082337467290927
STLEYDGEEI	10	Unmodified	_STLEYDGEEI_					0	0	0		nc|ENSG00000137872|Q8NFY4-7|SEMA6D;nc|ENSG00000137872|Q8NFY4-8|SEMA6D;nc|ENSG00000137872|Q8NFY4-3|SEMA6D;nc|ENSG00000137872|Q8NFY4-2|SEMA6D;nc|ENSG00000137872|Q8NFY4-4|SEMA6D;nc|ENSG00000137872|Q8NFY4-5|SEMA6D;nc|ENSG00000137872|Q8NFY4-6|SEMA6D;ENSG00000137872|ENST00000536845|SEMA6D	nc|ENSG00000137872|Q8NFY4-7|SEMA6D	nc|ENSG00000137872|Q8NFY4-7|SEMA6D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3209228515625	2	578.256234	1154.49791	0.43294	0.00025035	0.24208	0.00013998	0.67502	0.00039033	578.2561500056308	82.985	0.34084	82.964	82.842	83.183	-0.020584					21	12	2	0	0	0	0.31691	1	21687	21687		9.3831	1.473	1	214080			45529	4092	26252	26253	55332	55332					-0.07315492689212988
STLFEAAYR	9	Unmodified	_STLFEAAYR_					0	0	0			REV__nc|ENSG00000160746|Q9NW15-4|ANO10	REV__nc|ENSG00000160746|Q9NW15-4|ANO10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8424682617188	2	529.269281	1056.52401	0.21204	0.00011222	-1.2271	-0.00064948	-1.0151	-0.00053726	529.2682596879649	46.365	0.53646	46.365	46.111	46.648	0					38	19	3	0	0	0	0.21905	1	10416	10416		23.148	5.0134	1	587110	+		45530	16915	26253	26254	55333	55333					-0.001991339364394662
STLFIAYYD	9	Unmodified	_STLFIAYYD_					0	0	0		ENSG00000258839|ENST00000555147|MC1R	ENSG00000258839|ENST00000555147|MC1R	ENSG00000258839|ENST00000555147|MC1R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8370361328125	2	546.76604	1091.51753	0.54889	0.00030012	4.187	0.0022893	4.7359	0.0025894	546.7679881777152	72.681	0.56106	72.681	72.374	72.935	0					34	20	2	0	0	0	0.2451	1	18446	18446		15.847	1.0089	1	122310			45531	8645	26254	26255	55334	55334					-0.024570718878067055
STLFSALLIK	10	Unmodified	_STLFSALLIK_					0	0	0		ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6;ENST00000435236.2_1_X:98974480-98975440:-|nuORF	ENSG00000196419|ENST00000360079|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8368530273438	2	546.8368	1091.65905	0.51635	0.00028236	-0.025153	-1.3754E-05	0.4912	0.00026861	546.8366472762035	72.098	1.0539	72.098	71.827	72.881	0					104	38	4	0	0	0	2.0929E-05	2	18345	18345;18394		143.91	74.804	1	3797100			45532	7861	26255	26256	55335;55336	55335					0.11688346205323796
STLFSALLIK	10	Unmodified	_STLFSALLIK_					0	0	0		ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6;ENST00000435236.2_1_X:98974480-98975440:-|nuORF	ENSG00000196419|ENST00000360079|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8369750976562	2	546.8368	1091.65905	0.68855	0.00037652	-0.14164	-7.7454E-05	0.54691	0.00029907	546.8365589409747	72.077	1.1092	72.133	71.842	72.951	0.056572					104	40	4	0	0	0	2.0929E-05	1	18364	18364		143.91	65.181	1	4102800			45533	7861	26255	26256	55337	55337					0.11688346205323796
STLFSALLIK	10	Unmodified	_STLFSALLIK_					0	0	0		ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6;ENST00000435236.2_1_X:98974480-98975440:-|nuORF	ENSG00000196419|ENST00000360079|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8368530273438	2	546.8368	1091.65905	0.63695	0.00034831	-0.18696	-0.00010223	0.45	0.00024607	546.8365596178608	72.151	1.1663	72.124	71.845	73.011	-0.027275					102	41	4	0	0	0	1.5674E-06	2	18394	18346;18394		155.95	77.226	1	4132500			45534	7861	26255	26256	55338;55339	55339					0.11688346205323796
STLGNRLYTC	10	Unmodified	_STLGNRLYTC_					0	0	0		ENST00000298355.7_1_14:51562345-51562540:-|nuORF	ENST00000298355.7_1_14:51562345-51562540:-|nuORF	ENST00000298355.7_1_14:51562345-51562540:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.816162109375	2	564.279323	1126.54409	0.68515	0.00038661	-0.25191	-0.00014215	0.43323	0.00024446	564.2784346985269	37.533	0.27545	37.533	37.285	37.56	0					10	9	2	0	0	0	0.31629	1	7669	7669		10.074	1.3285	1	75303			45535	9206	26256	26257	55340	55340					-0.01411706268117996
STLGWTRPTTL	11	Unmodified	_STLGWTRPTTL_					0	0	0			REV__ENST00000378204.6_1_8:119122534-119122684:-|nuORF	REV__ENST00000378204.6_1_8:119122534-119122684:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.55938720703125	3	411.559305	1231.65609	0.065775	2.707E-05	-0.4722	-0.00019434	-0.40642	-0.00016727	411.5593489676228	36.049	1.9049	36.049	35.52	37.424	0					188	68	5	0	0	0	0.2912	1	7352	7352		23.016	0.90677	1	15538000	+		45536	20516	26257	26258	55341	55341					0.04952471080514442
STLGWTRPTTL	11	Unmodified	_STLGWTRPTTL_					0	0	0			REV__ENST00000378204.6_1_8:119122534-119122684:-|nuORF	REV__ENST00000378204.6_1_8:119122534-119122684:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.55938720703125	3	411.559305	1231.65609	0.30851	0.00012697	-0.72705	-0.00029922	-0.41854	-0.00017225	411.55924776632094	35.951	1.7277	36.034	35.461	37.188	0.082359					190	62	6	0	0	0	0.34327	1	7312	7312		18.34	0.76781	1	16965000	+		45537	20516	26257	26258	55342	55342					0.04952471080514442
STLGWTRPTTL	11	Unmodified	_STLGWTRPTTL_					0	0	0			REV__ENST00000378204.6_1_8:119122534-119122684:-|nuORF	REV__ENST00000378204.6_1_8:119122534-119122684:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.559326171875	3	411.559305	1231.65609	0.33587	0.00013823	-0.68695	-0.00028272	-0.35108	-0.00014449	411.5592875969908	35.92	1.9217	36.006	35.671	37.592	0.086246					186	69	5	0	0	0	0.2912	1	7301	7301		23.016	4.2944	1	16899000	+		45538	20516	26257	26258	55343	55343					0.04952471080514442
STLGYTISR	9	Unmodified	_STLGYTISR_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2877502441406	2	499.269281	996.52401	0.64261	0.00032083	-0.95597	-0.00047729	-0.31337	-0.00015645	499.2692283834222	36.965	0.53337	36.965	36.7	37.233	0					42	17	4	0	0	0	0.23693	1	7616	7616		21.59	9.3495	1	328450			45539	6454	26258	26259	55344	55344					0.025608660635839442
STLGYTISR	9	Unmodified	_STLGYTISR_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2875671386719	2	499.269281	996.52401	0.46678	0.00023305	-0.90853	-0.0004536	-0.44175	-0.00022055	499.2693189324044	36.838	0.45998	36.926	36.682	37.142	0.087406					39	16	4	0	0	0	0.19888	1	7578	7578		26.021	9.8716	1	323130			45540	6454	26258	26259	55345	55345					0.025608660635839442
STLHHLRML	9	Unmodified	_STLHHLRML_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A;KAT6A|p.E789Kfs*10|1|0.16|ENSG00000083168|chr8:41942831-41942864|CGTTTTCTCCTTCCTCAGCCTCCTCTTCTTCCTC/-|frameshift_variant	ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2984008789062	2	554.308218	1106.60188	0.097599	5.41E-05	0.020204	1.1199E-05	0.1178	6.5299E-05	554.3083550522585	31.402	0.60328	31.445	31.106	31.709	0.042366					44	21	3	0	0	0	0.30623	1	5821	5821		7.9102	7.9102	1	418130			45541	1216	26259	26260	55346	55346					0.052846004479533804
STLHHLRML	9	Unmodified	_STLHHLRML_					0	0	0		ENSG00000083168|ENST00000265713|KAT6A;KAT6A|p.E789Kfs*10|1|0.16|ENSG00000083168|chr8:41942831-41942864|CGTTTTCTCCTTCCTCAGCCTCCTCTTCTTCCTC/-|frameshift_variant	ENSG00000083168|ENST00000265713|KAT6A	ENSG00000083168|ENST00000265713|KAT6A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	554.308218	1106.60188	0.12149	6.7342E-05	-0.056758	-3.1462E-05	0.06473	3.5881E-05	554.3083450857291	31.426	0.51979	31.426	31.09	31.61	0	-0.0002854	7.8695E-05	NaN	7.9102	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377220			45542	1216	26259	26260							0.052846004479533804
STLILSKRN	9	Unmodified	_STLILSKRN_					0	0	0			REV__ENSG00000105613|ENST00000251472|MAST1	REV__ENSG00000105613|ENST00000251472|MAST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.314208984375	2	516.314023	1030.61349	0.46504	0.00024011	-0.080923	-4.1782E-05	0.38412	0.00019833	516.314063938278	88.922	2.1153	88.922	88.403	90.518	0					346	134	7	0	0	0	0.31417	1	23483	23483		6.7232	0	1	6571200	+		45543	14467	26260	26261	55347	55347					0.0994112074295117
STLILSKRN	9	Unmodified	_STLILSKRN_					0	0	0			REV__ENSG00000105613|ENST00000251472|MAST1	REV__ENSG00000105613|ENST00000251472|MAST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.314208984375	2	516.314023	1030.61349	0.32446	0.00016752	0.28251	0.00014586	0.60696	0.00031338	516.3141153441646	88.954	1.452	88.953	88.541	89.993	-0.00080872					230	86	4	0	0	0	0.31417	2	23525	23525;23574		6.7232	0	1	7062300	+		45544	14467	26260	26261	55348;55349	55348					0.0994112074295117
STLINVGKQL	10	Unmodified	_STLINVGKQL_					0	0	0			REV__nc|ENSG00000104133|Q96JI7-2|SPG11	REV__nc|ENSG00000104133|Q96JI7-2|SPG11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.26904296875	2	536.821681	1071.62881	0.55541	0.00029816	-0.59983	-0.000322	-0.044421	-2.3846E-05	537.3226751206809	50.992	0.29456	51.038	50.848	51.142	0.046574					16	10	2	0	0	0	0.30093	1	11883	11883		21.537	1.1224	1	134060	+		45545	14396	26261	26262	55350	55350					0.09585987540140195
STLIRHQQIH	10	Unmodified	_STLIRHQQIH_					0	0	0		ENSG00000267041|ENST00000591344|ZNF850	ENSG00000267041|ENST00000591344|ZNF850	ENSG00000267041|ENST00000591344|ZNF850	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.9247131347656	3	411.566794	1231.67855	-0.26361	-0.00010849	-0.6106	-0.0002513	-0.87421	-0.0003598	411.5667178813825	13.135	0.36762	13.067	12.878	13.245	-0.067496					15	12	2	0	0	0	0.32143	1	326	326		1.5923	0	1	26483			45546	8682	26262	26263	55351	55351					0.07198115268784022
STLKNLLTYA	10	Unmodified	_STLKNLLTYA_					0	0	0			REV__ENST00000494435.5_1_21:47924311-47965916:+|nuORF	REV__ENST00000494435.5_1_21:47924311-47965916:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3229370117188	2	562.321514	1122.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.28	1	114.26	113.76	114.76	-0.019096								0	0	0	0.37664	1	29683	29683		3.5965	0	1		+		45547	16894	26263	26264	55352	55352					0.07206567820298915
STLNVGVNK	9	Unmodified	_STLNVGVNK_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;ENSG00000084693|ENST00000360131|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2637634277344	2	466.263999	930.513445	-0.063459	-2.9589E-05	0.38692	0.00018041	0.32346	0.00015082	466.26427659401315	26.966	0.76776	26.966	26.586	27.354	0					51	26	3	0	0	0	0.00045155	1	4516	4516		129.77	73.595	1	333510			45548	1246	26264	26265	55353	55353					0.04540883409151775
STLNVGVNK	9	Unmodified	_STLNVGVNK_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;ENSG00000084693|ENST00000360131|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2637023925781	2	466.263999	930.513445	-0.045045	-2.1003E-05	0.45698	0.00021307	0.41193	0.00019207	466.26429629714454	26.952	0.55757	26.93	26.709	27.266	-0.021412					43	19	3	0	0	0	0.00012108	1	4527	4527		137.42	74.851	1	370280			45549	1246	26264	26265	55354	55354					0.04540883409151775
STLNVGVNK	9	Unmodified	_STLNVGVNK_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;ENSG00000084693|ENST00000360131|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.76611328125	2	466.263999	930.513445	0.24846	0.00011585	0.023721	1.106E-05	0.27218	0.00012691	466.2640693856105	26.964	0.52463	26.952	26.741	27.266	-0.011562					31	18	2	0	0	0	0.23784	1	4567	4567		19.257	4.4187	1	351530			45550	1246	26264	26265	55355	55355					0.04540883409151775
STLNVGVNKK	10	Unmodified	_STLNVGVNKK_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;ENSG00000084693|ENST00000360131|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.293212890625	2	530.31148	1058.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.265	1	19.149	18.649	19.649	-0.11592								0	0	0	0.37157	1	2184	2184		5.7319	1.7875	1				45551	1246	26265	26266	55356	55356					0.08144816880326289
STLPAITLK	9	Unmodified	_STLPAITLK_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2945861816406	2	472.294768	942.574983	0.20165	9.5236E-05	-0.58128	-0.00027454	-0.37964	-0.0001793	472.2943808728432	49.005	0.95974	49.005	48.582	49.542	0					92	34	4	0	0	0	0.0032746	3	11277	11227;11277;11321		100.09	50.158	1	3667900			45552	2812	26266	26267	55357;55358;55359	55358					0.1013981510842541
STLPAITLK	9	Unmodified	_STLPAITLK_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2944641113281	2	472.294768	942.574983	0.21672	0.00010236	-0.542	-0.00025598	-0.32528	-0.00015363	472.29441551337817	49.035	0.96338	49.08	48.629	49.593	0.044891					95	34	4	0	0	0	0.0048951	3	11269	11220;11269;11313		87.258	35.843	1	3997800			45553	2812	26266	26267	55360;55361;55362	55361					0.1013981510842541
STLPAITLK	9	Unmodified	_STLPAITLK_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2945251464844	2	472.294768	942.574983	0.089833	4.2428E-05	-0.35533	-0.00016782	-0.26549	-0.00012539	472.29445784870506	49.017	0.99932	49.049	48.549	49.548	0.032043					92	35	4	0	0	0	0.0045319	2	11272	11229;11272		90.135	44.395	1	3580300			45554	2812	26266	26267	55363;55364	55364					0.1013981510842541
STLPDRFIHF	10	Unmodified	_STLPDRFIHF_					0	0	0			REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5592346191406	3	411.552262	1231.63496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.234	1	36.32	35.82	36.82	0.08625								0	0	0	0.34072	1	7334	7334		18.721	5.1863	1		+		45555	16827	26267	26268	55365	55365					0.028405057716327065
STLPGQSLIDK	11	Unmodified	_STLPGQSLIDK_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3338012695312	2	579.821878	1157.6292	0.45964	0.00026651	-0.88598	-0.00051371	-0.42634	-0.0002472	579.8218615374085	46.016	0.47417	46.016	45.72	46.194	0					29	16	2	0	0	0	0.32344	1	10287	10287		14.957	0	1	719730			45556	886	26268	26269	55366	55366					0.05669362469302541
STLPKPVQK	9	Unmodified	_STLPKPVQK_					0	0	0		nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;ENST00000521293.5_1_8:74529642-74659041:-|nuORF;nc|ENSG00000040341|Q9NUL3-5|STAU2;ENST00000524113.5_1_8:74585313-74650536:-|nuORF;ENST00000522962.5_1_8:74566130-74621380:-|nuORF	nc|ENSG00000040341|Q9NUL3-8|STAU2	nc|ENSG00000040341|Q9NUL3-8|STAU2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.30572509765625	2	499.305667	996.596781	0.17241	8.6083E-05	0.1435	7.165E-05	0.3159	0.00015773	499.3056598195581	18.949	1.3218	18.949	18.363	19.685	0					122	46	4	0	0	0	0.058995	4	2092	2003;2044;2092;2135		49.554	21.925	1	671110			45557	601	26269	26270	55367;55368;55369;55370	55369					0.09834619856997051
STLPKPVQK	9	Unmodified	_STLPKPVQK_					0	0	0		nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;ENST00000521293.5_1_8:74529642-74659041:-|nuORF;nc|ENSG00000040341|Q9NUL3-5|STAU2;ENST00000524113.5_1_8:74585313-74650536:-|nuORF;ENST00000522962.5_1_8:74566130-74621380:-|nuORF	nc|ENSG00000040341|Q9NUL3-8|STAU2	nc|ENSG00000040341|Q9NUL3-8|STAU2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3057556152344	2	499.305667	996.596781	0.19938	9.9551E-05	-0.01431	-7.1453E-06	0.18507	9.2406E-05	499.3056475625481	19.116	1.7989	18.999	17.985	19.784	-0.11739					144	62	3	0	0	0	0.0042138	4	2129	2016;2081;2129;2234		92.653	21.679	1	738420			45558	601	26269	26270	55371;55372;55373;55374	55373					0.09834619856997051
STLPKPVQK	9	Unmodified	_STLPKPVQK_					0	0	0		nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;ENST00000521293.5_1_8:74529642-74659041:-|nuORF;nc|ENSG00000040341|Q9NUL3-5|STAU2;ENST00000524113.5_1_8:74585313-74650536:-|nuORF;ENST00000522962.5_1_8:74566130-74621380:-|nuORF	nc|ENSG00000040341|Q9NUL3-8|STAU2	nc|ENSG00000040341|Q9NUL3-8|STAU2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.3057556152344	2	499.305667	996.596781	0.12593	6.2878E-05	0.058471	2.9195E-05	0.1844	9.2073E-05	499.3056742527269	19.064	1.3908	19.006	18.285	19.676	-0.058174					127	48	4	0	0	0	0.010453	3	2111	2061;2111;2158		78.728	26.46	1	736100			45559	601	26269	26270	55375;55376;55377	55376					0.09834619856997051
STLPKSLLK	9	Unmodified	_STLPKSLLK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7795715332031	2	493.815867	985.617182	0.36993	0.00018268	0.1137	5.6146E-05	0.48363	0.00023882	493.8158371231017	32.881	0.90021	32.881	32.556	33.456	0					53	31	2	0	0	0	0.19208	1	6314	6314		21.59	6.3417	1	400770			45560	6847	26270	26271	55378	55378					0.12379790516820321
STLPKSLLK	9	Unmodified	_STLPKSLLK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.8158874511719	2	493.815867	985.617182	0.42894	0.00021182	-0.0093491	-4.6167E-06	0.41959	0.0002072	493.81574931118536	32.733	0.778	32.788	32.534	33.312	0.055309					54	27	3	0	0	0	0.16685	1	6272	6272		28.495	3.5035	1	279540			45561	6847	26270	26271	55379	55379					0.12379790516820321
STLPKSLLK	9	Unmodified	_STLPKSLLK_					0	0	0		nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	nc|ENSG00000175216|Q14008-2|CKAP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7796630859375	2	493.815867	985.617182	0.33648	0.00016616	0.28706	0.00014176	0.62354	0.00030791	493.81588651486567	32.763	1.1503	32.817	32.306	33.457	0.054371					66	41	3	0	0	0	0.20381	1	6284	6284		29.841	3.5724	1	365080			45562	6847	26270	26271	55380	55380					0.12379790516820321
STLPLTRIP	9	Unmodified	_STLPLTRIP_					0	0	0			REV__ENST00000274853.7_1_6:30653942-30654101:-|nuORF	REV__ENST00000274853.7_1_6:30653942-30654101:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.3061218261719	2	499.305667	996.596781	0.17241	8.6083E-05	0.1435	7.165E-05	0.3159	0.00015773	499.3056598195581	18.949	1.3218	18.949	18.363	19.685	0					122	46	4	0	0	0	0.31417	1	2182	2182		6.7232	2.3939	1	671110	+		45563	19690	26271	26272	55381	55381					0.09834619856974314
STLPLTRIP	9	Unmodified	_STLPLTRIP_					0	0	0			REV__ENST00000274853.7_1_6:30653942-30654101:-|nuORF	REV__ENST00000274853.7_1_6:30653942-30654101:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3058776855469	2	499.305667	996.596781	0.19938	9.9551E-05	-0.01431	-7.1453E-06	0.18507	9.2406E-05	499.3056475625481	19.116	1.7989	18.999	17.985	19.784	-0.11739					144	62	3	0	0	0	0.12642	1	2180	2180		34.402	1.616	1	738420	+		45564	19690	26271	26272	55382	55382					0.09834619856974314
STLPLTRIP	9	Unmodified	_STLPLTRIP_					0	0	0			REV__ENST00000274853.7_1_6:30653942-30654101:-|nuORF	REV__ENST00000274853.7_1_6:30653942-30654101:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.3059387207031	2	499.305667	996.596781	0.12593	6.2878E-05	0.058471	2.9195E-05	0.1844	9.2073E-05	499.3056742527269	19.064	1.3908	19.006	18.285	19.676	-0.058174					127	48	4	0	0	0	0.31417	1	2203	2203		6.7232	0.51738	1	736100	+		45565	19690	26271	26272	55383	55383					0.09834619856974314
STLPLYAW	8	Unmodified	_STLPLYAW_					0	0	0		ENST00000469033.1_1_4:40776294-40778281:+|nuORF;nc|ENSG00000179299|Q8NE18-3|NSUN7;ENST00000473399.5_1_4:40752710-40776973:+|nuORF;nc|ENSG00000179299|Q8NE18-2|NSUN7;ENSG00000179299|ENST00000381782|NSUN7	ENST00000469033.1_1_4:40776294-40778281:+|nuORF	ENST00000469033.1_1_4:40776294-40778281:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.2823486328125	2	475.752736	949.490919	0.074113	3.5259E-05	-1.298	-0.00061755	-1.2239	-0.00058229	475.7525162546057	27.392	0.36667	27.381	27.132	27.499	-0.011562					14	12	2	0	0	0	0.34319	1	4607	4607		5.7604	0	1	39963			45566	7115	26272	26273	55384	55384					0.014152840115002618
STLQVGSLNVK	11	Unmodified	_STLQVGSLNVK_					0	0	0		ENST00000569700.5_1_16:1869077-1876788:-|nuORF;nc|ENSG00000063854|Q16775-2|HAGH;ENSG00000063854|ENST00000397356|HAGH	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.7728271484375	2	573.32987	1144.64519	0.25075	0.00014376	0.16703	9.5764E-05	0.41778	0.00023952	573.3299790900513	43.897	0.44725	43.981	43.736	44.183	0.083996					30	16	2	0	0	0	0.019907	1	9685	9685		84.738	58.717	1	1282600			45567	780	26273	26274	55385	55385					0.0786506870622361
STLQVGSLNVK	11	Unmodified	_STLQVGSLNVK_					0	0	0		ENST00000569700.5_1_16:1869077-1876788:-|nuORF;nc|ENSG00000063854|Q16775-2|HAGH;ENSG00000063854|ENST00000397356|HAGH	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	573.32987	1144.64519	0.16635	9.5373E-05	0.56087	0.00032156	0.72722	0.00041694	573.3302057876944	44.025	0.46043	44.025	43.819	44.28	0	0.02759	0.00025087	NaN	84.738	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1434600			45568	780	26273	26274							0.0786506870622361
STLQVGSLNVK	11	Unmodified	_STLQVGSLNVK_					0	0	0		ENST00000569700.5_1_16:1869077-1876788:-|nuORF;nc|ENSG00000063854|Q16775-2|HAGH;ENSG00000063854|ENST00000397356|HAGH	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	ENST00000569700.5_1_16:1869077-1876788:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	573.32987	1144.64519	0.36009	0.00020645	-0.13262	-7.6038E-05	0.22746	0.00013041	573.329850579266	43.909	0.46973	43.986	43.762	44.232	0.077515	-0.011135	-0.00054433	NaN	84.738	48	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1381000			45569	780	26273	26274							0.0786506870622361
STLRAPSLLYK	11	Unmodified	_STLRAPSLLYK_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.1891784667969	3	416.915201	1247.72377	-0.06077	-2.5336E-05	0.0521	2.1721E-05	-0.00867	-3.6147E-06	416.91511639055767	43.528	1.0024	43.528	42.902	43.904	0					88	36	4	0	0	0	0.28944	1	9586	9586		29.419	20.975	1	1240800			45570	4135	26274	26275	55386	55386					0.10981921011330087
STLRAPSLLYK	11	Unmodified	_STLRAPSLLYK_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.2807006835938	2	624.869163	1247.72377	0.31719	0.0001982	0.13117	8.1963E-05	0.44836	0.00028017	624.8694067272834	43.574	0.40476	43.574	43.362	43.767	0					26	14	2	0	0	0	0.32316	1	9579	9579		23.016	15.407	1	369840			45571	4135	26274	26275	55387	55387					0.10981921011330087
STLRAPSLLYK	11	Unmodified	_STLRAPSLLYK_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9152526855469	3	416.915201	1247.72377	0.3668	0.00015292	-0.21164	-8.8235E-05	0.15516	6.4687E-05	416.9150158327731	43.314	0.74105	43.391	42.995	43.736	0.077518					73	26	5	0	0	0	0.021361	1	9504	9504		61.523	45.984	1	1436000			45572	4135	26274	26275	55388	55388					0.10981921011330087
STLRAPSLLYK	11	Unmodified	_STLRAPSLLYK_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.27978515625	2	624.869163	1247.72377	0.21412	0.00013379	0.27272	0.00017042	0.48684	0.00030421	624.8693829578435	43.327	0.47139	43.404	43.155	43.626	0.077515					38	16	3	0	0	0	0.29829	1	9499	9499		31.636	15.487	1	301880			45573	4135	26274	26275	55389	55389					0.10981921011330087
STLRAPSLLYK	11	Unmodified	_STLRAPSLLYK_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.9152526855469	3	416.915201	1247.72377	0.19013	7.927E-05	-0.10723	-4.4704E-05	0.082908	3.4566E-05	416.9150560053152	43.288	0.78021	43.372	43.035	43.815	0.083996					89	28	4	0	0	0	0.044534	1	9495	9495		54.823	39.284	1	1327900			45574	4135	26274	26275	55390	55390					0.10981921011330087
STLRAPSLLYK	11	Unmodified	_STLRAPSLLYK_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.2802734375	2	624.869163	1247.72377	0.20624	0.00012887	-0.0441	-2.7557E-05	0.16214	0.00010131	624.8690894182427	43.244	0.54372	43.328	43.14	43.684	0.083992					38	19	3	0	0	0	0.32797	1	9513	9513		13.519	3.9747	1	386890			45575	4135	26274	26275	55391	55391					0.10981921011330087
STLRDLIFK	9	Unmodified	_STLRDLIFK_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8245239257812	2	546.824224	1091.63389	0.39979	0.00021862	-0.39345	-0.00021515	0.0063426	3.4683E-06	546.8244571922984	52.034	0.92997	52.034	51.508	52.438	0					88	33	4	0	0	0	0.067514	1	12192	12192		69.338	29.381	1	1254900			45576	3229	26275	26276	55392	55392					0.09174291402769086
STLRDLIFK	9	Unmodified	_STLRDLIFK_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8245849609375	2	546.824224	1091.63389	0.58343	0.00031904	0.26256	0.00014357	0.84599	0.00046261	546.8242862574647	51.99	0.57217	52.04	51.817	52.389	0.050571					37	20	2	0	0	0	0.08842	1	12186	12186		61.09	33.461	1	1260900			45577	3229	26275	26276	55393	55393					0.09174291402769086
STLRDLIFK	9	Unmodified	_STLRDLIFK_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8247680664062	2	546.824224	1091.63389	0.36786	0.00020116	0.60253	0.00032948	0.97039	0.00053063	546.8244949163284	52.264	0.56672	52.263	51.982	52.548	-0.00081253					56	20	4	0	0	0	0.16039	1	12303	12303		29.437	6.7009	1	1469300			45578	3229	26275	26276	55394	55394					0.09174291402769086
STLSHRPVWYL	11	Unmodified	_STLSHRPVWYL_					0	0	0		ENST00000396425.7_1_22:42390756-42390969:+|nuORF	ENST00000396425.7_1_22:42390756-42390969:+|nuORF	ENST00000396425.7_1_22:42390756-42390969:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.2062072753906	3	453.5787	1357.71427	-0.16959	-7.6921E-05	-0.9953	-0.00045145	-1.1649	-0.00052837	453.57822890599897	34.337	0.67294	34.403	34.021	34.694	0.066704					33	23	2	0	0	0	0.33236	1	6749	6749		2.4348	0.18206	1	89212			45579	10115	26276	26277	55395	55395					0.04972152725804335
STLTASEIRQR	11	Unmodified	_STLTASEIRQR_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.233154296875	3	421.233481	1260.67861	-0.17495	-7.3693E-05	-0.49489	-0.00020847	-0.66984	-0.00028216	421.2332428829463	25.53	0.47061	25.53	25.328	25.798	0					48	15	4	0	0	0	0.14667	1	4072	4072		35.996	23.768	1	446260			45580	1389	26277	26278	55396	55396					0.05870070478135858
STLTASEIRQR	11	Unmodified	_STLTASEIRQR_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.23309326171875	3	421.233481	1260.67861	-0.26907	-0.00011334	-0.35901	-0.00015123	-0.62808	-0.00026457	421.23330899994784	25.588	0.54589	25.532	25.25	25.796	-0.055931					48	18	4	0	0	0	0.37255	1	4138	4138		14.838	8.6035	1	422300			45581	1389	26277	26278	55397	55397					0.05870070478135858
STLTASEIRQR	11	Unmodified	_STLTASEIRQR_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.2334289550781	3	421.233481	1260.67861	-0.22995	-9.6861E-05	-0.36409	-0.00015337	-0.59404	-0.00025023	421.23326698749105	25.582	0.49842	25.551	25.294	25.793	-0.03141					49	17	4	0	0	0	0.3322	1	4083	4083		2.6312	0.72486	1	392290			45582	1389	26277	26278	55398	55398					0.05870070478135858
STLTFSQPG	9	Unmodified	_STLTFSQPG_					0	0	0			REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.5873718261719	2	469.234907	936.455261	-0.030137	-1.4141E-05	-0.36768	-0.00017253	-0.39782	-0.00018667	469.23478947387406	26.287	0.56452	26.248	26.01	26.575	-0.038671					27	19	2	0	0	0	0.25706	1	4360	4360		6.7232	0	1	80972	+		45583	13132	26278	26279	55399	55399					-0.015507982361327777
STLTFSQPG	9	Unmodified	_STLTFSQPG_					0	0	0			REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	469.234907	936.455261	-0.085457	-4.0099E-05	-0.19632	-9.2122E-05	-0.28178	-0.00013222	469.23489973904714	26.335	0.57713	26.335	25.981	26.558	0	0.046671	-5.833E-05	NaN	6.7232	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82738	+		45584	13132	26278	26279							-0.015507982361327777
STLTFSQPG	9	Unmodified	_STLTFSQPG_					0	0	0			REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	REV__nc|ENSG00000157617|Q9Y426-2|C2CD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	469.234907	936.455261	0.24612	0.00011549	0.59219	0.00027788	0.83831	0.00039337	469.2345922325323	26.305	0.48736	26.283	26.043	26.53	-0.022238	-0.0061748	0.00068167	NaN	6.7232	36	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91934	+		45585	13132	26278	26279							-0.015507982361327777
STLTIYNAN	9	Unmodified	_STLTIYNAN_					0	0	0		nc|ENSG00000149294|P13591-5|NCAM1;nc|ENSG00000149294|P13591-4|NCAM1;nc|ENSG00000149294|P13591-3|NCAM1;nc|ENSG00000149294|P13591-1|NCAM1;ENSG00000149294|ENST00000316851|NCAM1;nc|ENSG00000149294|P13591-6|NCAM1	nc|ENSG00000149294|P13591-5|NCAM1	nc|ENSG00000149294|P13591-5|NCAM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7662353515625	2	498.753464	995.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.468	1	63.563	63.063	64.063	0.095722								0	0	0	0.13597	1	15713	15713		37.974	1.847	1				45586	4858	26279	26280	55400	55400					-0.005551266903921714
STLTIYNAN	9	Unmodified	_STLTIYNAN_					0	0	0		nc|ENSG00000149294|P13591-5|NCAM1;nc|ENSG00000149294|P13591-4|NCAM1;nc|ENSG00000149294|P13591-3|NCAM1;nc|ENSG00000149294|P13591-1|NCAM1;ENSG00000149294|ENST00000316851|NCAM1;nc|ENSG00000149294|P13591-6|NCAM1	nc|ENSG00000149294|P13591-5|NCAM1	nc|ENSG00000149294|P13591-5|NCAM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.76611328125	2	498.753464	995.492375	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.572	1	63.564	63.064	64.064	-0.0085526								0	0	0	0.15265	1	15741	15741		34.102	1.797	1				45587	4858	26279	26280	55401	55401					-0.005551266903921714
STLTIYNANI	10	Unmodified	_STLTIYNANI_					0	0	0		nc|ENSG00000149294|P13591-5|NCAM1;nc|ENSG00000149294|P13591-4|NCAM1;nc|ENSG00000149294|P13591-3|NCAM1;nc|ENSG00000149294|P13591-1|NCAM1;ENSG00000149294|ENST00000316851|NCAM1;nc|ENSG00000149294|P13591-6|NCAM1	nc|ENSG00000149294|P13591-5|NCAM1	nc|ENSG00000149294|P13591-5|NCAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.257568359375	2	555.295496	1108.57644	0.45919	0.00025498	-0.98663	-0.00054787	-0.52744	-0.00029288	555.2950300324273	45.311	0.70643	45.311	45.069	45.776	0					59	25	3	0	0	0	0.21213	1	10135	10135		33.445	0	1	1124600			45588	4858	26280	26281	55402	55402					0.026494044064975242
STLTSKYRG	9	Unmodified	_STLTSKYRG_					0	0	0		ENST00000481905.5_1_6:149919348-149924475:-|nuORF;nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000102781|ENST00000380615|KATNAL1;ENSG00000186625|ENST00000367411|KATNA1	ENST00000481905.5_1_6:149919348-149924475:-|nuORF	ENST00000481905.5_1_6:149919348-149924475:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7747802734375	2	506.774731	1011.53491	0.097213	4.9265E-05	0.1386	7.0239E-05	0.23581	0.0001195	506.77471448088914	17.475	0.61348	17.358	17.081	17.694	-0.11739					47	21	3	0	0	0	0.29176	1	1675	1675		10.074	1.3285	1	197370			45589	1781	26281	26282	55403	55403					0.02960268437857394
STLTSKYRG	9	Unmodified	_STLTSKYRG_					0	0	0		ENST00000481905.5_1_6:149919348-149924475:-|nuORF;nc|ENSG00000186625|O75449-2|KATNA1;ENSG00000102781|ENST00000380615|KATNAL1;ENSG00000186625|ENST00000367411|KATNA1	ENST00000481905.5_1_6:149919348-149924475:-|nuORF	ENST00000481905.5_1_6:149919348-149924475:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	506.774731	1011.53491	0.097213	4.9265E-05	0.1386	7.0239E-05	0.23581	0.0001195	506.77471448088914	17.475	0.61348	17.358	17.081	17.694	-0.11739	0.04338	0.00021549	NaN	10.074	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197370			45590	1781	26281	26282							0.02960268437857394
STLTYRMTK	9	Oxidation (M)	_STLTYRM(Oxidation (M))TK_		STLTYRM(1)TK		STLTYRM(120)TK	0	0	1		ENST00000446662.5_1_16:22466144-22470768:+|nuORF;ENST00000522841.6_1_16:21490806-21495758:-|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.7896118164062	2	558.789524	1115.56449	0.27911	0.00015597	-0.17038	-9.5205E-05	0.10874	6.0761E-05	558.7894348529263	17.202	1.0345	17.202	16.895	17.93	0					103	35	5	0	0	0	0.0011116	3	1562	1512;1562;1607		121.35	38.817	1	1299700			45591	10599	26282	26283	55404;55405;55406	55405		946			0.011334643916825371
STLTYRMTK	9	Oxidation (M)	_STLTYRM(Oxidation (M))TK_		STLTYRM(1)TK		STLTYRM(94)TK	0	0	1		ENST00000446662.5_1_16:22466144-22470768:+|nuORF;ENST00000522841.6_1_16:21490806-21495758:-|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.7896118164062	2	558.789524	1115.56449	0.14213	7.9423E-05	-0.0036591	-2.0446E-06	0.13848	7.7379E-05	558.7895046646344	17.383	1.2137	17.266	16.937	18.151	-0.11739					112	42	4	0	0	0	0.0040516	2	1601	1601;1648		93.938	33.864	1	1174800			45592	10599	26282	26283	55407;55408	55407		946			0.011334643916825371
STLTYRMTK	9	Oxidation (M)	_STLTYRM(Oxidation (M))TK_		STLTYRM(1)TK		STLTYRM(110)TK	0	0	1		ENST00000446662.5_1_16:22466144-22470768:+|nuORF;ENST00000522841.6_1_16:21490806-21495758:-|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	ENST00000446662.5_1_16:22466144-22470768:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.7896118164062	2	558.789524	1115.56449	0.28983	0.00016195	-0.25068	-0.00014008	0.039145	2.1874E-05	558.7894252246087	17.29	1.0609	17.23	16.917	17.978	-0.060429					119	37	5	0	0	0	0.0019382	2	1567	1567;1612		110.79	35.032	1	1102100			45593	10599	26282	26283	55409;55410	55409		946			0.011334643916825371
STLVKYAEK	9	Unmodified	_STLVKYAEK_					0	0	0		ENST00000460453.1_1_10:5956174-5957535:+|nuORF;ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1	ENST00000460453.1_1_10:5956174-5957535:+|nuORF	ENST00000460453.1_1_10:5956174-5957535:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7950439453125	2	519.795132	1037.57571	0.2052	0.00010666	-0.032368	-1.6825E-05	0.17283	8.9835E-05	519.7949900078203	31.436	0.43517	31.436	31.231	31.667	0					29	15	2	0	0	0	0.17242	1	5872	5872		36.127	14.38	1	877210			45594	3786	26283	26284	55411	55411					0.058426097574511004
STLVKYAEK	9	Unmodified	_STLVKYAEK_					0	0	0		ENST00000460453.1_1_10:5956174-5957535:+|nuORF;ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1	ENST00000460453.1_1_10:5956174-5957535:+|nuORF	ENST00000460453.1_1_10:5956174-5957535:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.751953125	2	519.795132	1037.57571	0.12033	6.2549E-05	-0.11389	-5.92E-05	0.0064439	3.3495E-06	519.7949618137236	31.403	0.44629	31.445	31.237	31.683	0.042364					33	15	3	0	0	0	0.21389	1	5849	5849		19.257	0	1	792390			45595	3786	26283	26284	55412	55412					0.058426097574511004
STLYFSLHLK	10	Unmodified	_STLYFSLHLK_					0	0	0			REV__ENSG00000116954|ENST00000373001|RRAGC	REV__ENSG00000116954|ENST00000373001|RRAGC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.22161865234375	3	403.560646	1207.66011	0.059406	2.3974E-05	0.01597	6.4448E-06	0.075376	3.0419E-05	403.56060031776815	19.975	0.57513	19.919	19.544	20.119	-0.055693					29	20	2	0	0	0	0.32033	1	2413	2413		1.7423	0	1	44518	+		45596	14948	26284	26285	55413	55413					0.06458560574219518
STMFAYKH	8	Unmodified	_STMFAYKH_					0	0	0			REV__ENSG00000139151|ENST00000266505|PLCZ1	REV__ENSG00000139151|ENST00000266505|PLCZ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.3053894042969	2	492.73402	983.453487	0.36128	0.00017802	1.9925	0.00098175	2.3537	0.0011598	492.73462558802004	21.54	0.28472	21.49	21.29	21.574	-0.049377					13	9	2	0	0	0	0.34247	1	2828	2828		8.5933	2.8329	1	46220	+		45597	15966	26285	26286	55414	55414					-0.038901305257468266
STMGYMLSY	9	2 Oxidation (M)	_STM(Oxidation (M))GYM(Oxidation (M))LSY_		STM(1)GYM(1)LSY		STM(61)GYM(61)LSY	0	0	2		ENST00000511918.5_1_5:90609002-90610084:-|nuORF;ENST00000607854.1_1_5:90609002-90610198:-|nuORF	ENST00000511918.5_1_5:90609002-90610084:-|nuORF	ENST00000511918.5_1_5:90609002-90610084:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7197265625	2	542.719918	1083.42528	0.61463	0.00033357	-0.5614	-0.00030468	0.053232	2.889E-05	542.7195878454852	49.263	0.7061	49.263	48.995	49.701	0					61	25	3	0	0	0	0.027237	1	11374	11374		61.357	19.263	1	723250			45598	11389	26286	26287	55415	55415		954;955			-0.11309241287972327
STMGYMLSY	9	2 Oxidation (M)	_STM(Oxidation (M))GYM(Oxidation (M))LSY_		STM(1)GYM(1)LSY		STM(52)GYM(52)LSY	0	0	2		ENST00000511918.5_1_5:90609002-90610084:-|nuORF;ENST00000607854.1_1_5:90609002-90610198:-|nuORF	ENST00000511918.5_1_5:90609002-90610084:-|nuORF	ENST00000511918.5_1_5:90609002-90610084:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7198486328125	2	542.719918	1083.42528	0.50921	0.00027636	-0.31943	-0.00017336	0.18978	0.000103	542.7196406779694	49.34	0.67572	49.385	49.073	49.749	0.044888					55	24	3	0	0	0	0.051692	1	11325	11325		52.268	10.174	1	782950			45599	11389	26286	26287	55416	55416		954;955			-0.11309241287972327
STMGYMLSY	9	2 Oxidation (M)	_STM(Oxidation (M))GYM(Oxidation (M))LSY_		STM(1)GYM(1)LSY		STM(52)GYM(52)LSY	0	0	2		ENST00000511918.5_1_5:90609002-90610084:-|nuORF;ENST00000607854.1_1_5:90609002-90610198:-|nuORF	ENST00000511918.5_1_5:90609002-90610084:-|nuORF	ENST00000511918.5_1_5:90609002-90610084:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.7203369140625	2	542.719918	1083.42528	0.43628	0.00023678	-0.53254	-0.00028902	-0.096266	-5.2245E-05	542.7197075832071	49.247	0.74677	49.279	48.983	49.73	0.032043					65	26	4	0	0	0	0.051692	1	11284	11284		52.268	18.166	1	759960			45600	11389	26286	26287	55417	55417		954;955			-0.11309241287972327
STMLQAIER	9	Oxidation (M)	_STM(Oxidation (M))LQAIER_		STM(1)LQAIER		STM(83)LQAIER	0	0	1		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.774169921875	2	532.773874	1063.53319	0.31767	0.00016925	0.66167	0.00035252	0.97934	0.00052177	532.7740986314124	31.192	0.60845	31.192	30.918	31.526	0					46	21	3	0	0	0	0.0074885	1	5802	5802		83.278	47.151	1	472710			45601	7248	26287	26288	55418	55418		806			0.003968913575818078
STMLQAIER	9	Oxidation (M)	_STM(Oxidation (M))LQAIER_		STM(1)LQAIER		STM(100)LQAIER	0	0	1		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.774169921875	2	532.773874	1063.53319	0.089601	4.7737E-05	0.86433	0.00046049	0.95393	0.00050823	532.7741687989788	31.164	0.60401	31.207	30.996	31.6	0.042366					51	21	3	0	0	0	0.0030911	1	5813	5813		101.54	42.865	1	517640			45602	7248	26287	26288	55419	55419		806			0.003968913575818078
STMLQAIER	9	Oxidation (M)	_STM(Oxidation (M))LQAIER_		STM(1)LQAIER		STM(83)LQAIER	0	0	1		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.77392578125	2	532.773874	1063.53319	0.40236	0.00021436	0.49263	0.00026246	0.89499	0.00047683	532.7739690832235	31.133	0.48759	31.174	30.959	31.447	0.040991					44	17	3	0	0	0	0.0074885	1	5779	5779		83.278	54.196	1	536650			45603	7248	26287	26288	55420	55420		806			0.003968913575818078
STMQSLLSM	9	2 Oxidation (M)	_STM(Oxidation (M))QSLLSM(Oxidation (M))_		STM(1)QSLLSM(1)		STM(48)QSLLSM(48)	0	0	2			REV__ENSG00000105186|ENST00000306065|ANKRD27	REV__ENSG00000105186|ENST00000306065|ANKRD27	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2478637695312	2	515.233193	1028.45183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.312	1	75.312	74.812	75.812	0								0	0	0	0.093871	1	19344	19344		47.749	11.704	1		+		45604	14441	26288	26289	55421	55421		991;992			-0.061255523966565306
STMQSLLSM	9	2 Oxidation (M)	_STM(Oxidation (M))QSLLSM(Oxidation (M))_		STM(1)QSLLSM(1)		STM(44)QSLLSM(44)	0	0	2			REV__ENSG00000105186|ENST00000306065|ANKRD27	REV__ENSG00000105186|ENST00000306065|ANKRD27	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2479248046875	2	515.233193	1028.45183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.473	1	75.473	74.973	75.973	0								0	0	0	0.11063	1	19393	19393		43.858	7.8141	1		+		45605	14441	26288	26289	55422	55422		991;992			-0.061255523966565306
STMQYVILMYM	11	Unmodified	_STMQYVILMYM_					0	0	0		ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.6003723144531	3	460.551777	1378.6335	0.028793	1.326E-05	-1.8438	-0.00084918	-1.815	-0.00083592	460.55103790097917	26.808	0.70786	26.787	26.333	27.041	-0.021412					50	24	3	0	0	0	0.3322	1	4467	4467		2.6312	0	1	111010			45606	7912	26289	26290	55423	55423					-0.04066955695270735
STMQYVILMYM	11	Unmodified	_STMQYVILMYM_					0	0	0		ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	ENST00000529970.5_1_11:120278459-120348246:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.60028076171875	3	460.551777	1378.6335	0.30261	0.00013937	-1.8909	-0.00087088	-1.5883	-0.00073151	460.5512983131541	26.821	0.58685	26.809	26.483	27.07	-0.01156					53	20	3	0	0	0	0.3322	1	4461	4461		4.7159	0.30977	1	104430			45607	7912	26289	26290	55424	55424					-0.04066955695270735
STMSSFGHM	9	Unmodified	_STMSSFGHM_					0	0	0		ENST00000230124.7_1_6:110107555-110107606:+|nuORF	ENST00000230124.7_1_6:110107555-110107606:+|nuORF	ENST00000230124.7_1_6:110107555-110107606:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.3053894042969	2	492.69932	983.384087	0.47775	0.00023539	-0.81492	-0.00040151	-0.33717	-0.00016612	492.69885328904155	21.069	0.6518	21.016	20.749	21.401	-0.05291					39	22	2	0	0	0	0.25622	1	2828	2828		7.2892	4.7117	1	173090			45608	8859	26290	26291	55425	55425					-0.10826957536801274
STMSSFGHM	9	Unmodified	_STMSSFGHM_					0	0	0		ENST00000230124.7_1_6:110107555-110107606:+|nuORF	ENST00000230124.7_1_6:110107555-110107606:+|nuORF	ENST00000230124.7_1_6:110107555-110107606:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	492.69932	983.384087	0.49384	0.00024331	-1.0137	-0.00049947	-0.5199	-0.00025616	492.6988139039079	20.984	0.77758	20.984	20.709	21.487	0	-0.054487	-8.753E-05	NaN	7.2892	41	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138670			45609	8859	26290	26291							-0.10826957536801274
STMSSFGHM	9	Unmodified	_STMSSFGHM_					0	0	0		ENST00000230124.7_1_6:110107555-110107606:+|nuORF	ENST00000230124.7_1_6:110107555-110107606:+|nuORF	ENST00000230124.7_1_6:110107555-110107606:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	492.69932	983.384087	0.603	0.0002971	-0.87179	-0.00042953	-0.2688	-0.00013244	492.6988585626868	21.226	0.62588	21.116	20.808	21.434	-0.11003	0.077128	5.2344E-05	NaN	7.2892	38	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180240			45610	8859	26290	26291							-0.10826957536801274
STMSTNGIPR	10	Oxidation (M)	_STM(Oxidation (M))STNGIPR_		STM(1)STNGIPR		STM(170)STNGIPR	0	0	1		ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2620849609375	2	540.26113	1078.50771	0.59949	0.00032388	-0.14887	-8.0428E-05	0.45062	0.00024345	540.2615631148585	20.992	1.4729	20.992	20.423	21.896	0					196	51	5	0	0	0	8.3317E-09	3	2722	2592;2679;2722		169.92	116.09	1	5034700			45611	9559	26291	26292	55426;55427;55428	55428		927			-0.0284058316485698
STMSTNGIPR	10	Oxidation (M)	_STM(Oxidation (M))STNGIPR_		STM(1)STNGIPR		STM(220)STNGIPR	0	0	1		ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2608032226562	2	540.26113	1078.50771	0.71053	0.00038387	-0.28274	-0.00015275	0.42779	0.00023112	540.2615035711052	21.171	1.6144	21.061	20.581	22.195	-0.11003					184	57	5	0	0	0	1.4514E-20	5	2821	2657;2733;2777;2821;2866		216.42	153.85	1	6086800			45612	9559	26291	26292	55429;55430;55431;55432;55433	55432		927			-0.0284058316485698
STMSTNGIPR	10	Oxidation (M)	_STM(Oxidation (M))STNGIPR_		STM(1)STNGIPR		STM(200)STNGIPR	0	0	1		ENST00000453527.6_1_8:11710176-11718921:-|nuORF;ENST00000534510.5_1_8:11710176-11715376:-|nuORF;ENST00000532370.1_1_8:11710176-11711001:-|nuORF;ENST00000530296.5_1_8:11710176-11726410:-|nuORF;ENST00000527243.5_1_8:11710176-11719899:-|nuORF;ENST00000345125.7_1_8:11710176-11718921:-|nuORF;ENST00000534636.5_1_8:11710176-11725551:-|nuORF;ENST00000353047.10_1_8:11710176-11725594:-|nuORF;ENST00000531089.5_1_8:11710176-11725551:-|nuORF;ENST00000531502.5_1_8:11710176-11725594:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	ENST00000453527.6_1_8:11710176-11718921:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2609252929688	2	540.26113	1078.50771	0.67929	0.00036699	-0.26229	-0.0001417	0.417	0.00022529	540.2614947857313	21.078	1.7315	21.025	20.499	22.23	-0.052912					201	61	5	0	0	0	3.2406E-15	6	2790	2630;2679;2704;2748;2790;2842		202.97	149.14	1	5444000			45613	9559	26291	26292	55434;55435;55436;55437;55438;55439	55438		927			-0.0284058316485698
STMVDVRVMKK	11	2 Oxidation (M)	_STM(Oxidation (M))VDVRVM(Oxidation (M))KK_		STM(1)VDVRVM(1)KK		STM(61)VDVRVM(61)KK	0	0	2		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.5691223144531	3	442.568707	1324.68429	0.083022	3.6743E-05	0.019665	8.7032E-06	0.10269	4.5446E-05	442.5689933818862	16.413	1.2299	16.413	15.867	17.097	0					144	42	5	0	0	0	0.023365	2	1340	1296;1340		60.943	36.979	1	1655600			45614	1254	26292	26293	55440;55441	55441		148;149			0.0349370967392133
STMVDVRVMKK	11	2 Oxidation (M)	_STM(Oxidation (M))VDVRVM(Oxidation (M))KK_		STM(1)VDVRVM(1)KK		STM(54)VDVRVM(54)KK	0	0	2		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.56903076171875	3	442.568707	1324.68429	-0.067586	-2.9911E-05	0.035101	1.5535E-05	-0.032485	-1.4377E-05	442.56902014793883	16.491	1.3451	16.376	15.838	17.183	-0.11434					160	47	6	0	0	0	0.048078	2	1337	1337;1380		53.798	34.654	1	1783700			45615	1254	26292	26293	55442;55443	55442		148;149			0.0349370967392133
STMVDVRVMKK	11	2 Oxidation (M)	_STM(Oxidation (M))VDVRVM(Oxidation (M))KK_		STM(1)VDVRVM(1)KK		STM(63)VDVRVM(63)KK	0	0	2		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.5690612792969	3	442.568707	1324.68429	0.16997	7.5222E-05	-0.0090336	-3.998E-06	0.16093	7.1224E-05	442.5688895163883	16.433	1.1116	16.37	16.038	17.149	-0.062534					104	39	3	0	0	0	0.016618	2	1326	1326;1368		62.894	43.75	1	1866600			45616	1254	26292	26293	55444;55445	55444		148;149			0.0349370967392133
STMYPGLPSRL	11	Oxidation (M)	_STM(Oxidation (M))YPGLPSRL_		STM(1)YPGLPSRL		STM(150)YPGLPSRL	0	0	1		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.3161010742188	2	619.315906	1236.61726	0.24506	0.00015177	-0.069028	-4.275E-05	0.17603	0.00010902	619.3159201867913	51.902	1.3513	51.902	51.172	52.523	0					179	49	5	0	0	0	5.17E-09	5	12108	12009;12059;12108;12157;12205		150.06	111.45	1	8718200			45617	4111	26293	26294	55446;55447;55448;55449;55450	55448		525			0.008414224544821991
STMYPGLPSRL	11	Oxidation (M)	_STM(Oxidation (M))YPGLPSRL_		STM(1)YPGLPSRL		STM(160)YPGLPSRL	0	0	1		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.3160400390625	2	619.315906	1236.61726	0.13852	8.5787E-05	0.0036339	2.2505E-06	0.14215	8.8037E-05	619.3159546845728	51.844	1.5647	51.894	51.146	52.711	0.050575					188	57	5	0	0	0	1.3918E-12	6	12135	11988;12047;12092;12135;12177;12220		160.97	122.35	1	10485000			45618	4111	26293	26294	55451;55452;55453;55454;55455;55456	55454		525			0.008414224544821991
STMYPGLPSRL	11	Oxidation (M)	_STM(Oxidation (M))YPGLPSRL_		STM(1)YPGLPSRL		STM(170)YPGLPSRL	0	0	1		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.3159790039062	2	619.315906	1236.61726	0.037478	2.3211E-05	0.079736	4.9382E-05	0.11721	7.2592E-05	619.3160170942975	52.009	1.8492	52.008	51.108	52.958	-0.00081253					199	68	5	0	0	0	5.7183E-13	7	12150	12007;12055;12103;12150;12201;12249;12294		172.26	106.79	1	9210700			45619	4111	26293	26294	55457;55458;55459;55460;55461;55462;55463	55460		525			0.008414224544821991
STNALGHK	8	Unmodified	_STNALGHK_					0	0	0			REV__ENST00000243347.4_1_2:152214244-152220573:+|nuORF	REV__ENST00000243347.4_1_2:152214244-152220573:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.56292724609375	2	414.222134	826.429715	0.09128	3.781E-05	0.41846	0.00017333	0.50974	0.00021114	414.22239170993436	15.867	0.47253	15.757	15.579	16.051	-0.10982					17	15	2	0	0	0	0.34092	1	1127	1127		13.508	7.7475	1	17525	+		45620	19495	26294	26295	55464	55464					0.009557720320913177
STNATYQLQE	10	Unmodified	_STNATYQLQE_					0	0	0		ENST00000496494.5_1_8:72111577-72234167:-|nuORF;nc|ENSG00000104313|Q99502-3|EYA1;nc|ENSG00000104313|Q99502-2|EYA1;ENSG00000104313|ENST00000340726|EYA1	ENST00000496494.5_1_8:72111577-72234167:-|nuORF	ENST00000496494.5_1_8:72111577-72234167:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.7705688476562	2	577.769842	1153.52513	0.38586	0.00022294	-1.2584	-0.00072707	-0.87255	-0.00050413	577.7688967184349	30.492	0.96415	30.52	29.845	30.81	0.027946					61	33	3	0	0	0	0.324	1	5576	5576		17.443	3.8278	1	336090			45621	1878	26295	26296	55465	55465					-0.0454896435817318
STNAYMPLLK	10	Oxidation (M)	_STNAYM(Oxidation (M))PLLK_		STNAYM(1)PLLK		STNAYM(100)PLLK	0	0	1		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3001098632812	2	577.299724	1152.5849	-0.1426	-8.2321E-05	0.27792	0.00016044	0.13532	7.812E-05	577.2998757204756	38.977	0.61848	38.977	38.623	39.242	0					48	21	3	0	0	0	0.0034473	1	8182	8182		100.71	78.051	1	423080			45622	742	26296	26297	55466	55466		96			0.014706350514870792
STNAYMPLLK	10	Oxidation (M)	_STNAYM(Oxidation (M))PLLK_		STNAYM(1)PLLK		STNAYM(91)PLLK	0	0	1		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.2999877929688	2	577.299724	1152.5849	0.25921	0.00014964	-0.24178	-0.00013958	0.017424	1.0059E-05	577.2994229745864	38.898	0.62831	38.991	38.622	39.251	0.09267					47	22	3	0	0	0	0.0050981	1	8153	8153		91.085	74.936	1	388380			45623	742	26296	26297	55467	55467		96			0.014706350514870792
STNAYMPLLK	10	Oxidation (M)	_STNAYM(Oxidation (M))PLLK_		STNAYM(1)PLLK		STNAYM(65)PLLK	0	0	1		ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.2993774414062	2	577.299724	1152.5849	0.43049	0.00024852	-0.27149	-0.00015673	0.159	9.1788E-05	577.2994459381372	38.868	0.53223	38.968	38.652	39.184	0.099407					33	18	2	0	0	0	0.025736	1	8153	8153		65.474	53.233	1	470010			45624	742	26296	26297	55468	55468		96			0.014706350514870792
STNFKLIYR	9	Unmodified	_STNFKLIYR_					0	0	0		nc|ENSG00000109184|Q92564-2|DCUN1D4;ENSG00000109184|ENST00000334635|DCUN1D4;nc|ENSG00000109184|Q92564-3|DCUN1D4	nc|ENSG00000109184|Q92564-2|DCUN1D4	nc|ENSG00000109184|Q92564-2|DCUN1D4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.7847290039062	2	571.321848	1140.62914	-0.060162	-3.4372E-05	1.1485	0.00065614	1.0883	0.00062177	571.3224340091915	39.734	1.0033	39.734	39.189	40.193	0					77	36	3	0	0	0	0.24993	1	8309	8309		13.042	6.8367	1	693710			45625	2243	26297	26298	55469	55469					0.06445407260002867
STNFKLIYR	9	Unmodified	_STNFKLIYR_					0	0	0		nc|ENSG00000109184|Q92564-2|DCUN1D4;ENSG00000109184|ENST00000334635|DCUN1D4;nc|ENSG00000109184|Q92564-3|DCUN1D4	nc|ENSG00000109184|Q92564-2|DCUN1D4	nc|ENSG00000109184|Q92564-2|DCUN1D4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7845458984375	2	571.321848	1140.62914	0.30189	0.00017248	1.0302	0.00058856	1.3321	0.00076104	571.3223065833046	39.557	0.74152	39.649	39.201	39.943	0.09267					61	26	3	0	0	0	0.24848	1	8254	8254		13.906	2.2658	1	882240			45626	2243	26297	26298	55470	55470					0.06445407260002867
STNGGRRGMRY	11	Unmodified	_STNGGRRGMRY_					0	0	0			REV__ENST00000525139.5_1_11:26581321-26620424:+|nuORF	REV__ENST00000525139.5_1_11:26581321-26620424:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5626525878906	3	418.875522	1253.60474	-0.13704	-5.7404E-05	-1.4735	-0.00061721	-1.6105	-0.00067462	418.87491599165895	30.392	1.288	30.419	29.578	30.866	0.027157					76	44	2	0	0	0	0.33236	1	5305	5305		4.4062	1.9714	1	1140700	+		45627	21947	26298	26299	55471	55471					-0.011921761651592533
STNNIAQAR	9	Unmodified	_STNNIAQAR_					0	0	0		ENSG00000172380|ENST00000370982|GNG12	ENSG00000172380|ENST00000370982|GNG12	ENSG00000172380|ENST00000370982|GNG12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7536926269531	2	487.75433	973.494107	0.034668	1.6909E-05	-2.4195	-0.0011801	-2.3848	-0.0011632	487.7531438057708	15.465	0.65985	15.465	15.232	15.892	0					71	22	6	0	0	0	0.23749	1	1072	1072		15.248	8.1468	1	153080			45628	6630	26299	26300	55472	55472					0.006299271182228949
STNNIAQAR	9	Unmodified	_STNNIAQAR_					0	0	0		ENSG00000172380|ENST00000370982|GNG12	ENSG00000172380|ENST00000370982|GNG12	ENSG00000172380|ENST00000370982|GNG12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7535400390625	2	487.75433	973.494107	0.07193	3.5084E-05	-2.1163	-0.0010322	-2.0443	-0.00099714	487.75349852037897	15.596	0.94415	15.487	14.955	15.899	-0.10981					47	32	2	0	0	0	0.017549	1	1094	1094		67.838	34.393	1	205560			45629	6630	26299	26300	55473	55473					0.006299271182228949
STNNIAQAR	9	Unmodified	_STNNIAQAR_					0	0	0		ENSG00000172380|ENST00000370982|GNG12	ENSG00000172380|ENST00000370982|GNG12	ENSG00000172380|ENST00000370982|GNG12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.75384521484375	2	487.75433	973.494107	0.054673	2.6667E-05	-2.1824	-0.0010645	-2.1277	-0.0010378	487.753439280286	15.556	0.79258	15.492	15.013	15.806	-0.064414					40	26	2	0	0	0	0.07944	1	1086	1086		41.956	21.541	1	211650			45630	6630	26299	26300	55474	55474					0.006299271182228949
STNNWVLIK	9	Unmodified	_STNNWVLIK_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.26953125	2	537.800749	1073.58694	0.50217	0.00027007	-2.7861	-0.0014984	-2.2839	-0.0012283	537.7992346792932	49.766	0.35349	49.766	49.6	49.953	0					21	12	2	0	0	0	0.11234	1	11496	11496		51.63	26.23	1	427400			45631	802	26300	26301	55475	55475					0.0530943185160595
STNNWVLIK	9	Unmodified	_STNNWVLIK_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.269287109375	2	537.800749	1073.58694	0.39674	0.00021337	-2.6046	-0.0014008	-2.2079	-0.0011874	537.7994784315737	49.733	0.38846	49.778	49.593	49.981	0.044891					23	14	2	0	0	0	0.20881	1	11468	11468		27.629	17.555	1	437170			45632	802	26300	26301	55476	55476					0.0530943185160595
STNNWVLIK	9	Unmodified	_STNNWVLIK_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2693481445312	2	537.800749	1073.58694	0.47051	0.00025304	-2.9466	-0.0015847	-2.4761	-0.0013316	537.7991168604374	49.727	0.37186	49.747	49.537	49.909	0.020691					21	13	2	0	0	0	0.18479	1	11483	11483		34.932	17.99	1	338100			45633	802	26300	26301	55477	55477					0.0530943185160595
STNPFRPQK	9	Unmodified	_STNPFRPQK_					0	0	0		nc|ENSG00000133136|A0A804HLA8|GNG5B;ENSG00000174021|ENST00000370645|GNG5	nc|ENSG00000133136|A0A804HLA8|GNG5B	nc|ENSG00000133136|A0A804HLA8|GNG5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.78857421875	2	537.788173	1073.56179	0.35356	0.00019014	0.016012	8.611E-06	0.36957	0.00019875	537.788287871351	19.626	1.0405	19.626	19.095	20.136	0					131	37	5	0	0	0	0.0028542	5	2295	2202;2248;2295;2340;2381		103.42	57.398	1	2181600			45634	6768	26301	26302	55478;55479;55480;55481;55482	55480					0.027953770490285024
STNPFRPQK	9	Unmodified	_STNPFRPQK_					0	0	0		nc|ENSG00000133136|A0A804HLA8|GNG5B;ENSG00000174021|ENST00000370645|GNG5	nc|ENSG00000133136|A0A804HLA8|GNG5B	nc|ENSG00000133136|A0A804HLA8|GNG5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7886962890625	2	537.788173	1073.56179	0.42039	0.00022608	-0.018001	-9.6805E-06	0.40239	0.0002164	537.7882736199997	19.802	1.1953	19.687	19.058	20.253	-0.11592					138	41	5	0	0	0	0.0019475	6	2347	2254;2300;2347;2389;2433;2476		110.67	64.654	1	2403900			45635	6768	26301	26302	55483;55484;55485;55486;55487;55488	55485					0.027953770490285024
STNPFRPQK	9	Unmodified	_STNPFRPQK_					0	0	0		nc|ENSG00000133136|A0A804HLA8|GNG5B;ENSG00000174021|ENST00000370645|GNG5	nc|ENSG00000133136|A0A804HLA8|GNG5B	nc|ENSG00000133136|A0A804HLA8|GNG5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.78857421875	2	537.788173	1073.56179	0.58943	0.00031699	-0.18861	-0.00010143	0.40081	0.00021555	537.7881831993335	19.733	1.5204	19.678	19.144	20.665	-0.055693					138	54	4	0	0	0	0.0010463	6	2345	2211;2259;2302;2345;2387;2436		122.18	82.222	1	2492600			45636	6768	26301	26302	55489;55490;55491;55492;55493;55494	55492					0.027953770490285024
STNPKAALK	9	Unmodified	_STNPKAALK_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2742614746094	2	465.274367	928.53418	-0.32511	-0.00015126	-0.10718	-4.9867E-05	-0.43228	-0.00020113	465.27467056628836	14.142	0.64443	14.038	13.845	14.489	-0.10466					41	21	2	0	0	0	0.21447	1	651	651		21.537	6.6987	1	254710			45637	5650	26302	26303	55495	55495					0.06705473788781546
STNRFVRTV	9	Unmodified	_STNRFVRTV_					0	0	0		nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1;ENSG00000273749|ENST00000617928|CYFIP1	nc|ENSG00000273749|Q7L576-2|CYFIP1;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3012084960938	2	540.301447	1078.58834	0.35394	0.00019123	-0.67024	-0.00036213	-0.31631	-0.0001709	540.3010202104102	24.573	0.9829	24.542	24.089	25.072	-0.031408					35	18	3	0	0	0	0.25714	1	3783	3783		15.248	1.3424	1	158480			45638	8708;12995	26303	26304	55496	55496					0.052190659403549944
STNSFALNK	9	Unmodified	_STNSFALNK_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;BPTF|p.A3017Efs*15|1|0.04|ENSG00000171634|chr17:67975903-67975904|-/AATATTCT|frameshift_variant;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000579209.1_1_17:62758032-62758825:-|nuORF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.25360107421875	2	491.253631	980.49271	0.020407	1.0025E-05	-0.57849	-0.00028419	-0.55808	-0.00027416	491.2532539325218	27.872	0.89748	27.872	27.38	28.277	0					83	30	3	0	0	0	3.361E-11	2	4793	4793;4848		192.32	119.35	1	867700			45639	79	26304	26305	55497;55498	55497					0.0016829302946916869
STNSFALNK	9	Unmodified	_STNSFALNK_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;BPTF|p.A3017Efs*15|1|0.04|ENSG00000171634|chr17:67975903-67975904|-/AATATTCT|frameshift_variant;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000579209.1_1_17:62758032-62758825:-|nuORF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.253662109375	2	491.253631	980.49271	0.014526	7.136E-06	-0.67247	-0.00033036	-0.65795	-0.00032322	491.2532327411082	27.882	0.99457	27.877	27.284	28.278	-0.0042572					97	34	3	0	0	0	2.1937E-08	2	4793	4793;4883		179.28	96.754	1	1007300			45640	79	26304	26305	55499;55500	55499					0.0016829302946916869
STNSFALNK	9	Unmodified	_STNSFALNK_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;BPTF|p.A3017Efs*15|1|0.04|ENSG00000171634|chr17:67975903-67975904|-/AATATTCT|frameshift_variant;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;ENST00000579209.1_1_17:62758032-62758825:-|nuORF	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2535400390625	2	491.253631	980.49271	-0.068194	-3.3501E-05	-0.55458	-0.00027244	-0.62278	-0.00030594	491.25332580191815	27.872	1.1078	27.872	27.302	28.41	0.0004673					107	38	4	0	0	0	2.1937E-08	3	4776	4776;4794;4858		179.28	115.32	1	858250			45641	79	26304	26305	55501;55502;55503	55501					0.0016829302946916869
STNSHPILRK	10	Unmodified	_STNSHPILRK_					0	0	0		nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.8279418945312	2	576.827829	1151.64111	-0.086059	-4.9641E-05	0.058731	3.3878E-05	-0.027328	-1.5763E-05	576.8278472950345	13.848	0.27859	13.848	13.714	13.992	0					26	9	4	0	0	0	0.41168	1	576	576		1.3295	0	1	75706			45642	4115	26305	26306	55504	55504					0.07135024003196122
STNSHPILRK	10	Unmodified	_STNSHPILRK_					0	0	0		nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8276977539062	2	576.827829	1151.64111	-0.040749	-2.3505E-05	0.05941	3.427E-05	0.018662	1.0765E-05	576.8276539266683	13.928	0.44802	13.823	13.513	13.961	-0.10466					32	15	4	0	0	0	0.40106	1	595	595		3.2813	0	1	67419			45643	4115	26305	26306	55505	55505					0.07135024003196122
STPEELRGY	9	Unmodified	_STPEELRGY_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.2577514648438	2	526.256371	1050.49819	0.55037	0.00028964	1.8485	0.00097277	2.3988	0.0012624	526.2576206699848	17.307	0.64309	17.247	16.887	17.53	-0.060429					49	22	3	0	0	0	0.34923	1	1617	1617		1.4819	0	1	72987			45644	7353	26306	26307	55506	55506					-0.02504028178691442
STPEVEIQLL	10	Unmodified	_STPEVEIQLL_					0	0	0			REV__ENSG00000171435|ENST00000339824|KSR2	REV__ENSG00000171435|ENST00000339824|KSR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.8113403320312	2	564.810979	1127.6074	0.41474	0.00023425	0.33064	0.00018675	0.74539	0.000421	564.8111195896569	38.691	0.98518	38.789	38.465	39.45	0.097527					86	35	4	0	0	0	0.29092	1	8059	8059		21.537	21.537	1	2010100	+		45645	17636	26307	26308	55507	55507					0.04870557720778379
STPKTKELS	9	Unmodified	_STPKTKELS_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7771301269531	2	495.776939	989.539325	0.49566	0.00024574	-2.44	-0.0012097	-1.9443	-0.00096394	495.7757686884892	21.062	0.45257	21.009	20.809	21.261	-0.052912					25	15	2	0	0	0	0.29638	1	2736	2736		9.3831	1.2276	1	101610			45646	7854	26308	26309	55508	55508					0.04413732860757591
STPLAGLAPK	10	Unmodified	_STPLAGLAPK_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.78460693359375	2	477.784567	953.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.245	1	41.245	40.745	41.745	0								0	0	0	0.12576	1	8870	8870		49.554	7.5987	1				45647	1058	26309	26310	55509	55509					0.07594644448602139
STPLAGLAPK	10	Unmodified	_STPLAGLAPK_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7847595214844	2	477.784567	953.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.401	1	41.401	40.901	41.901	0								0	0	0	0.012695	1	8919	8919		70.332	33.826	1				45648	1058	26309	26310	55510	55510					0.07594644448602139
STPLAGLAPK	10	Unmodified	_STPLAGLAPK_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7850646972656	2	477.784567	953.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.541	1	41.541	41.041	42.041	0								0	0	0	0.047366	1	8962	8962		63.961	27.833	1				45649	1058	26309	26310	55511	55511					0.07594644448602139
STPLAGLAPK	10	Unmodified	_STPLAGLAPK_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.78485107421875	2	477.784567	953.554582	0.14971	7.1528E-05	0.56033	0.00026772	0.71003	0.00033924	477.78474081664694	41.34	0.84826	41.43	40.85	41.698	0.090248					87	32	4	0	0	0	0.015324	3	8899	8851;8899;8950		76.825	33.052	1	4387900			45650	1058	26309	26310	55512;55513;55514	55513					0.07594644448602139
STPLAGLAPK	10	Unmodified	_STPLAGLAPK_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7848815917969	2	477.784567	953.554582	0.21857	0.00010443	0.47318	0.00022608	0.69175	0.00033051	477.78464569199167	41.207	0.76781	41.304	40.832	41.6	0.096622					80	28	4	0	0	0	0.048379	3	8871	8822;8871;8924		59.368	22.862	1	5199500			45651	1058	26309	26310	55515;55516;55517	55516					0.07594644448602139
STPLLRIAW	9	Unmodified	_STPLLRIAW_					0	0	0		ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.83203125	2	528.813659	1055.61277	0.47499	0.00025118	1.7104	0.00090446	2.1853	0.0011556	528.8143018896478	43.409	0.94844	43.409	43.116	44.065	0					49	34	2	0	0	0	0.25314	1	9700	9700		15.847	1.0089	1	253110			45652	2756	26310	26311	55518	55518					0.0871832609386729
STPPGRSLTP	10	Unmodified	_STPPGRSLTP_					0	0	0			REV__ENST00000406423.5_1_22:38239639-38239846:-|nuORF	REV__ENST00000406423.5_1_22:38239639-38239846:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7749938964844	2	506.774731	1011.53491	0.29713	0.00015058	-0.19611	-9.9385E-05	0.10102	5.1192E-05	506.7746196274244	17.271	0.61382	17.271	17.014	17.628	0					49	21	3	0	0	0	0.30958	1	1577	1577		19.257	0	1	225630	+		45653	20739	26311	26312	55519	55519					0.029602684378460253
STPPLLARSL	10	Unmodified	_STPPLLARSL_					0	0	0			REV__ENST00000483166.5_1_19:40743617-40745051:-|nuORF	REV__ENST00000483166.5_1_19:40743617-40745051:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7640380859375	2	527.816399	1053.61824	0.49228	0.00025984	-1.742	-0.00091947	-1.2497	-0.00065964	528.3163875497088	37.41	1.394	37.498	37.305	38.699	0.08741					73	50	2	0	0	0	0.31515	1	7893	7893		12.241	5.5175	1	815070	+		45654	21517	26312	26313	55520	55520					0.09358004885712035
STPRRTPAAPA	11	Unmodified	_STPRRTPAAPA_					0	0	0			REV__ENST00000262158.6_1_18:46476834-46476930:-|nuORF	REV__ENST00000262158.6_1_18:46476834-46476930:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3224487304688	2	562.812179	1123.60981	0.39491	0.00022226	0.69293	0.00038999	1.0878	0.00061225	562.8128213666479	93.201	0.5806	93.2	92.971	93.552	-0.00051117					127	56	3	0	0	0	0.33238	1	24857	24857		3.2813	0	1	221070	+		45655	19605	26313	26314	55521	55521					0.052944509690860286
STPTSQLHAL	10	Unmodified	_STPTSQLHAL_					0	0	0			REV__ENST00000434095.2_1_9:131904730-131904799:+|nuORF	REV__ENST00000434095.2_1_9:131904730-131904799:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.78271484375	2	527.780013	1053.54547	0.59579	0.00031445	2.6386	0.0013926	3.2343	0.001707	527.7823169886905	89.534	0.97321	89.534	88.965	89.938	0					77	59	2	0	0	0	0.3001	1	23707	23707		20.415	3.3016	1	142880	+		45656	20976	26314	26315	55522	55522					0.02084251092287559
STQAPLIIR	9	Unmodified	_STQAPLIIR_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF;ENST00000491027.5_1_7:105903822-105925330:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.24017333984375	2	499.803291	997.59203	0.5997	0.00029973	-0.19028	-9.5101E-05	0.40942	0.00020463	499.8028544230638	40.057	0.45235	40.15	39.967	40.42	0.09267					26	15	2	0	0	0	0.24787	1	8471	8471		15.248	4.4246	1	226710			45657	2028	26315	26316	55523	55523					0.09313735714238192
STQAPLIIR	9	Unmodified	_STQAPLIIR_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF;ENST00000491027.5_1_7:105903822-105925330:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	499.803291	997.59203	0.34786	0.00017386	-0.36634	-0.0001831	-0.018471	-9.232E-06	499.8029619279046	40.105	0.52945	40.105	39.858	40.388	0	-0.021413	-0.00012449	NaN	15.248	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218780			45658	2028	26315	26316							0.09313735714238192
STQAPLIIR	9	Unmodified	_STQAPLIIR_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF;ENST00000491027.5_1_7:105903822-105925330:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	499.803291	997.59203	0.41988	0.00020986	-0.17956	-8.9742E-05	0.24033	0.00012012	499.802947520103	40.025	0.47144	40.124	39.844	40.315	0.099407	-0.0019827	6.2212E-05	NaN	15.248	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220570			45659	2028	26315	26316							0.09313735714238192
STQDTTVALK	10	Unmodified	_STQDTTVALK_					0	0	0		nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2849731445312	2	532.285128	1062.5557	0.42863	0.00022815	1.1288	0.00060084	1.5574	0.00082899	532.2850010228232	25.122	0.4869	25.122	24.958	25.445	0					26	16	2	0	0	0	0.33327	1	3948	3948		15.739	8.1297	1	97885			45660	5243	26316	26317	55524	55524					0.02692814026841006
STQIVANAK	9	Unmodified	_STQIVANAK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.263671875	2	466.263999	930.513445	-0.062295	-2.9046E-05	-0.26271	-0.00012249	-0.32501	-0.00015154	466.2639246157191	17.644	1.0235	17.644	17.368	18.391	0					121	34	5	0	0	0	4.216E-07	3	1675	1675;1720;1766		163.69	97.23	1	2262100			45661	4787	26317	26318	55525;55526;55527	55525					0.04540883409129037
STQIVANAK	9	Unmodified	_STQIVANAK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2638244628906	2	466.263999	930.513445	-0.15774	-7.355E-05	-0.23211	-0.00010823	-0.38986	-0.00018178	466.26394048336346	17.761	1.5217	17.643	17.289	18.81	-0.11739					126	52	4	0	0	0	9.5135E-08	2	1776	1731;1776		176.43	109.97	1	2417900			45662	4787	26317	26318	55528;55529	55529					0.04540883409129037
STQIVANAK	9	Unmodified	_STQIVANAK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.263916015625	2	466.263999	930.513445	0.068988	3.2166E-05	-0.53909	-0.00025136	-0.4701	-0.00021919	466.2638292678972	17.768	1.1227	17.708	17.414	18.537	-0.060429					126	39	5	0	0	0	9.5135E-08	4	1751	1708;1751;1798;1921		176.43	100.67	1	2530600			45663	4787	26317	26318	55530;55531;55532;55533	55531					0.04540883409129037
STQKLKEN	8	Unmodified	_STQKLKEN_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.75372314453125	2	474.261456	946.50836	0.021545	1.0218E-05	-0.38234	-0.00018133	-0.3608	-0.00017111	474.26146280759167	15.597	0.32143	15.487	15.347	15.668	-0.10982					13	10	2	0	0	0	0.34294	1	1063	1063		7.2892	1.0834	1	28570	+		45664	13929	26318	26319	55534	55534					0.032965795465202063
STQLKLLQ	8	Unmodified	_STQLKLLQ_					0	0	0			REV__ENSG00000135249|ENST00000257700|RINT1	REV__ENSG00000135249|ENST00000257700|RINT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.26416015625	2	465.784567	929.554582	-0.11234	-5.2325E-05	-3.3659	-0.0015678	-3.4782	-0.0016201	465.7845604151497	18.378	1.3786	18.32	17.819	19.198	-0.058174					89	48	3	0	0	0	0.34167	1	1849	1849		11.64	0.81637	1	93884	+		45665	15729	26319	26320	55535	55535					0.08698644448600135
STQLLLRAEPL	11	Unmodified	_STQLLLRAEPL_					0	0	0			REV__ENST00000307790.7_3_22:30204126-30209496:-|nuORF	REV__ENST00000307790.7_3_22:30204126-30209496:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.57098388671875	3	414.246839	1239.71869	0.12388	5.1318E-05	1.054	0.00043661	1.1779	0.00048793	414.2474664133283	32.125	2.0387	32.125	31.8	33.839	0					172	72	4	0	0	0	0.39802	1	6499	6499		9.2438	1.7667	1	2244500	+		45666	19873	26320	26321	55536	55536					0.1084161714873062
STQQEKETIAK	11	Unmodified	_STQQEKETIAK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	631.8330078125	2	631.832974	1261.6514	0.023481	1.4836E-05	0.12352	7.8047E-05	0.14701	9.2883E-05	631.8329803934762	13.724	0.45677	13.724	13.567	14.024	0					42	15	4	0	0	0	0.047143	1	508	508		70.321	56.706	1	280670			45667	2725	26321	26322	55537	55537					0.0310354214709605
STQQEKETIAK	11	Unmodified	_STQQEKETIAK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5576477050781	3	421.557741	1261.6514	-0.37039	-0.00015614	-0.08272	-3.4871E-05	-0.45311	-0.00019101	421.5576524071651	13.714	0.6818	13.714	13.509	14.191	0					63	23	5	0	0	0	0.17299	1	514	514		33.632	16.584	1	362260			45668	2725	26321	26322	55538	55538					0.0310354214709605
STQQEKETIAK	11	Unmodified	_STQQEKETIAK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.5574951171875	3	421.557741	1261.6514	-0.36253	-0.00015283	-0.20984	-8.8459E-05	-0.57237	-0.00024129	421.5576181294731	13.839	0.76966	13.734	13.538	14.308	-0.10466					70	26	4	0	0	0	0.053629	1	540	540		52.193	31.322	1	383410			45669	2725	26321	26322	55539	55539					0.0310354214709605
STQQEKETIAK	11	Unmodified	_STQQEKETIAK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	631.833251953125	2	631.832974	1261.6514	-0.070987	-4.4852E-05	0.11014	6.959E-05	0.039153	2.4738E-05	631.8329847188991	13.848	0.4846	13.743	13.538	14.023	-0.10466					44	16	4	0	0	0	0.16129	1	541	541		40.714	34.084	1	254830			45670	2725	26321	26322	55540	55540					0.0310354214709605
STQQEKETIAK	11	Unmodified	_STQQEKETIAK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.832763671875	2	631.832974	1261.6514	0.046374	2.93E-05	0.22627	0.00014296	0.27264	0.00017226	631.8330863589022	13.83	0.4051	13.764	13.602	14.007	-0.066068					37	13	4	0	0	0	0.042305	1	536	536		72.276	57.871	1	310420			45671	2725	26321	26322	55541	55541					0.0310354214709605
STQQEKETIAK	11	Unmodified	_STQQEKETIAK_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5576477050781	3	421.557741	1261.6514	-0.31401	-0.00013237	-0.032702	-1.3786E-05	-0.34671	-0.00014616	421.55771111065536	13.829	0.60442	13.763	13.602	14.206	-0.066068					57	20	4	0	0	0	0.076423	1	543	543		45.603	27.263	1	425400			45672	2725	26321	26322	55542	55542					0.0310354214709605
STQRDLWNIFK	11	Unmodified	_STQRDLWNIFK_					0	0	0		ENSG00000188404|ENST00000236147|SELL;ENST00000463108.5_1_1:169670695-169680678:-|nuORF;nc|ENSG00000188404|P14151-2|SELL	ENSG00000188404|ENST00000236147|SELL	ENSG00000188404|ENST00000236147|SELL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.9175109863281	3	469.917493	1406.73065	0.028163	1.3234E-05	-0.1414	-6.6446E-05	-0.11324	-5.3212E-05	469.9174897452673	59.071	0.49703	59.071	58.8	59.297	0					35	17	3	0	0	0	0.36266	1	14381	14381		16.137	12.291	1	206020			45673	7750	26322	26323	55543	55543					0.04355233891874377
STQRDLWNIFK	11	Unmodified	_STQRDLWNIFK_					0	0	0		ENSG00000188404|ENST00000236147|SELL;ENST00000463108.5_1_1:169670695-169680678:-|nuORF;nc|ENSG00000188404|P14151-2|SELL	ENSG00000188404|ENST00000236147|SELL	ENSG00000188404|ENST00000236147|SELL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.71978759765625	3	469.917493	1406.73065	0.17411	8.1816E-05	-0.37741	-0.00017735	-0.2033	-9.5536E-05	469.9173069174342	58.841	0.50298	58.932	58.708	59.211	0.091301					36	17	3	0	0	0	0.32737	1	14286	14286		14.838	10.122	1	237160			45674	7750	26322	26323	55544	55544					0.04355233891874377
STQRDLWNIFK	11	Unmodified	_STQRDLWNIFK_					0	0	0		ENSG00000188404|ENST00000236147|SELL;ENST00000463108.5_1_1:169670695-169680678:-|nuORF;nc|ENSG00000188404|P14151-2|SELL	ENSG00000188404|ENST00000236147|SELL	ENSG00000188404|ENST00000236147|SELL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.30322265625	3	469.917493	1406.73065	0.32951	0.00015484	-0.40076	-0.00018833	-0.071252	-3.3482E-05	469.9174110483867	59.185	0.47939	59.17	58.947	59.427	-0.014267					25	16	2	0	0	0	0.28456	1	14364	14364		29.291	23.057	1	260940			45675	7750	26322	26323	55545	55545					0.04355233891874377
STRKPRPVSQL	11	Unmodified	_STRKPRPVSQL_					0	0	0		ENSG00000015153|ENST00000534854|YAF2	ENSG00000015153|ENST00000534854|YAF2	ENSG00000015153|ENST00000534854|YAF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.58575439453125	3	423.585966	1267.73607	-0.17566	-7.4408E-05	-0.23201	-9.8277E-05	-0.40767	-0.00017269	423.58587756288415	18.212	1.1077	18.212	17.898	19.006	0					63	38	3	0	0	0	0.33189	1	1823	1823		11.631	2.6551	1	1123000			45676	478	26323	26324	55546	55546					0.11290957474375318
STRNSPGSPL	10	Unmodified	_STRNSPGSPL_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2436218261719	2	508.261988	1014.50942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.255	1	19.139	18.639	19.639	-0.11592								0	0	0	0.35948	1	2181	2181		10.824	0	1		+		45677	14817	26324	26325	55547	55547					0.002747939154346568
STRPGKVQV	9	Unmodified	_STRPGKVQV_					0	0	0		ENST00000372625.7_1_X:102883928-102884824:+|nuORF	ENST00000372625.7_1_X:102883928-102884824:+|nuORF	ENST00000372625.7_1_X:102883928-102884824:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.285400390625	2	486.285266	970.555979	0.25092	0.00012202	-0.96495	-0.00046924	-0.71403	-0.00034722	486.2848646129866	79.791	0.79876	79.852	79.618	80.417	0.061409					53	29	2	0	0	0	0.25314	1	20756	20756		15.847	3.3156	1	222860			45678	9848	26325	26326	55548	55548					0.06952278537380607
STRPGKVQV	9	Unmodified	_STRPGKVQV_					0	0	0		ENST00000372625.7_1_X:102883928-102884824:+|nuORF	ENST00000372625.7_1_X:102883928-102884824:+|nuORF	ENST00000372625.7_1_X:102883928-102884824:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8001708984375	2	486.285266	970.555979	0.31606	0.0001537	-0.82376	-0.00040058	-0.5077	-0.00024689	486.28489315273646	79.988	0.74818	79.959	79.598	80.346	-0.028931					44	26	2	0	0	0	0.2322	1	20716	20716		14.838	4.0143	1	282020			45679	9848	26325	26326	55549	55549					0.06952278537380607
STRSHHRLF	9	Unmodified	_STRSHHRLF_					0	0	0			REV__ENSG00000141452|ENST00000269221|RMC1	REV__ENSG00000141452|ENST00000269221|RMC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.3112182617188	2	570.804688	1139.59482	-0.074557	-4.2558E-05	0.91341	0.00052138	0.83885	0.00047882	570.8051594979455	61.774	0.90868	61.766	61.505	62.413	-0.0085526					74	32	4	0	0	0	0.21389	1	15126	15126		19.257	0	1	1359200	+		45680	16076	26326	26327	55550	55550					0.030610038917302518
STRSHKAK	8	Unmodified	_STRSHKAK_					0	0	0			REV__ENST00000233813.4_1_2:217540876-217541113:-|nuORF	REV__ENST00000233813.4_1_2:217540876-217541113:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.1643371582031	2	457.761958	913.509363	0.01404	6.427E-06	3.2652	0.0014947	3.2793	0.0015011	457.7636734641369	26.793	0.50541	26.793	26.586	27.091	0					27	17	2	0	0	0	0.34046	1	4413	4413		14.582	2.0501	1	68437	+		45681	19479	26327	26328	55551	55551					0.04914838706088176
STRYPWQETL	10	Unmodified	_STRYPWQETL_					0	0	0			REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.23974609375	3	427.547177	1279.6197	-0.36084	-0.00015428	0.088826	3.7977E-05	-0.27201	-0.0001163	427.5471924744382	28.302	0.81334	28.303	27.992	28.805	0.0004673					72	28	4	0	0	0	0.32082	1	4866	4866		3.3196	0.24738	1	683290	+		45682	15664	26328	26329	55552	55552					-0.008924058161937864
STSAFGAYFK	10	Unmodified	_STSAFGAYFK_					0	0	0		ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3556518554688	2	539.763832	1077.51311	0.6245	0.00033708	0.036147	1.9511E-05	0.66065	0.0003566	539.763756243652	49.416	0.57271	49.416	49.077	49.65	0					35	20	2	0	0	0	0.081544	1	11368	11368		57.722	41.875	1	496450			45683	4006	26329	26330	55553	55553					-0.022545363107155936
STSAFGAYFK	10	Unmodified	_STSAFGAYFK_					0	0	0		ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3556518554688	2	539.763832	1077.51311	0.42385	0.00022878	0.27745	0.00014976	0.7013	0.00037854	539.7640388240128	49.428	0.58671	49.473	49.238	49.825	0.044891					40	21	3	0	0	0	0.24359	1	11391	11391		24.991	13.351	1	364720			45684	4006	26329	26330	55554	55554					-0.022545363107155936
STSAFGAYFK	10	Unmodified	_STSAFGAYFK_					0	0	0		ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	ENSG00000136856|ENST00000373371|SLC2A8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3558959960938	2	539.763832	1077.51311	0.40423	0.00021819	-0.37563	-0.00020275	0.028602	1.5438E-05	539.7637233508676	49.324	0.63313	49.356	49.072	49.706	0.032043					44	22	3	0	0	0	0.24359	1	11361	11361		31.268	19.628	1	444780			45685	4006	26329	26330	55555	55555					-0.022545363107155936
STSALIKGK	9	Unmodified	_STSALIKGK_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.91278076171875	2	452.776742	903.538931	-0.10194	-4.6155E-05	0.98186	0.00044456	0.87992	0.00039841	452.77708385546157	25.514	0.49046	25.458	25.16	25.65	-0.055931					28	16	2	0	0	0	0.24913	1	4069	4069		7.9102	0	1	92871	+		45686	19094	26330	26331	55556	55556					0.08330357931561139
STSALIKGK	9	Unmodified	_STSALIKGK_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2479248046875	2	452.776742	903.538931	-0.14818	-6.7094E-05	1.1659	0.00052789	1.0177	0.00046079	452.77720975360364	25.513	0.47631	25.482	25.237	25.713	-0.031408					28	16	2	0	0	0	0.24311	1	4091	4091		7.2892	0	1	131180	+		45687	19094	26330	26331	55557	55557					0.08330357931561139
STSATTYSAP	10	Unmodified	_STSATTYSAP_					0	0	0			REV__ENSG00000145012|ENST00000617246|LPP	REV__ENSG00000145012|ENST00000617246|LPP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2875061035156	2	493.227279	984.440005	0.14516	7.1597E-05	-0.12183	-6.0092E-05	0.023325	1.1504E-05	493.2270987809278	23.007	0.5717	23.007	22.791	23.362	0					34	19	3	0	0	0	0.31889	1	3299	3299		6.2058	1.8765	1	73393	+		45688	16272	26331	26332	55558	55558					-0.05283709824004745
STSDSVRLK	9	Unmodified	_STSDSVRLK_					0	0	0		ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1;ENST00000522397.5_1_8:54883012-54934915:-|nuORF	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7719421386719	2	496.772188	991.529823	0.19079	9.4781E-05	0.24606	0.00012224	0.43685	0.00021702	496.7723561101139	15.768	0.50192	15.768	15.591	16.093	0					35	17	3	0	0	0	0.069258	1	1118	1118		45.74	18.111	1	135780			45689	7704	26332	26333	55559	55559					0.03371964575228503
STSDSVRLK	9	Unmodified	_STSDSVRLK_					0	0	0		ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1;ENST00000522397.5_1_8:54883012-54934915:-|nuORF	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7725830078125	2	496.772188	991.529823	0.18622	9.2507E-05	-0.15205	-7.5532E-05	0.03417	1.6975E-05	496.77246051026447	15.913	0.56221	15.799	15.513	16.075	-0.11401					42	18	4	0	0	0	0.048637	1	1170	1170		53.404	28.005	1	114490			45690	7704	26332	26333	55560	55560					0.03371964575228503
STSDSVRLK	9	Unmodified	_STSDSVRLK_					0	0	0		ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1;ENST00000522397.5_1_8:54883012-54934915:-|nuORF	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7724914550781	2	496.772188	991.529823	0.17059	8.4746E-05	0.61472	0.00030537	0.78531	0.00039012	496.7725182971826	15.835	0.60044	15.77	15.545	16.146	-0.064203					41	20	3	0	0	0	0.16685	2	1141	1141;1189		28.495	15.452	1	131870			45691	7704	26332	26333	55561;55562	55561					0.03371964575228503
STSENITQK	9	Unmodified	_STSENITQK_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2535095214844	2	504.253828	1006.4931	0.017505	8.8272E-06	-0.22372	-0.00011281	-0.20621	-0.00010398	504.2536954445103	14.413	1.0181	14.413	13.962	14.981	0					60	35	2	0	0	0	0.00054549	1	698	698		128.57	74.74	1	1039800			45692	852	26333	26334	55563	55563					-0.009883320413450747
STSENITQK	9	Unmodified	_STSENITQK_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2534484863281	2	504.253828	1006.4931	0.023017	1.1606E-05	-0.23772	-0.00011987	-0.2147	-0.00010826	504.2536799659949	14.542	1.0022	14.437	13.933	14.935	-0.10466					58	34	2	0	0	0	0.001957	1	737	737		110.55	60.62	1	1089700			45693	852	26333	26334	55564	55564					-0.009883320413450747
STSENITQK	9	Unmodified	_STSENITQK_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.25360107421875	2	504.253828	1006.4931	-0.00060846	-3.0682E-07	-0.2051	-0.00010342	-0.20571	-0.00010373	504.25370172593193	14.515	0.94192	14.449	14.07	15.012	-0.066067					56	33	2	0	0	0	0.0023309	1	734	734		107.56	53.731	1	975900			45694	852	26333	26334	55565	55565					-0.009883320413450747
STSETPQPPR	10	Unmodified	_STSETPQPPR_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;MORF4L1|p.R243Pfs*6|1|0.07|ENSG00000185787|chr15:78893607-78893608|-/C|frameshift_variant;ENST00000558893.5_1_15:79165359-79184661:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.272216796875	2	550.272552	1098.53055	0.46102	0.00025368	0.54166	0.00029806	1.0027	0.00055175	550.2724909238777	21.399	1.3893	21.399	20.456	21.845	0					98	48	3	0	0	0	0.13784	2	2813	2733;2813		40.239	24.991	1	105150			45695	7557	26334	26335	55566;55567	55567					-0.014772407757391193
STSETPQPPR	10	Unmodified	_STSETPQPPR_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;MORF4L1|p.R243Pfs*6|1|0.07|ENSG00000185787|chr15:78893607-78893608|-/C|frameshift_variant;ENST00000558893.5_1_15:79165359-79184661:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.27197265625	2	550.272552	1098.53055	0.6308	0.00034711	-0.072105	-3.9678E-05	0.5587	0.00030744	550.2726161957495	21.408	1.4712	21.308	20.417	21.888	-0.10034					89	51	3	0	0	0	0.11062	3	2799	2784;2799;2855		45.74	27.594	1	138260			45696	7557	26334	26335	55568;55569;55570	55569					-0.014772407757391193
STSETPQPPR	10	Unmodified	_STSETPQPPR_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;MORF4L1|p.R243Pfs*6|1|0.07|ENSG00000185787|chr15:78893607-78893608|-/C|frameshift_variant;ENST00000558893.5_1_15:79165359-79184661:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.27197265625	2	550.272552	1098.53055	0.49235	0.00027093	0.18143	9.9836E-05	0.67378	0.00037076	550.2727080483878	21.399	1.5046	21.349	20.422	21.926	-0.049377					102	53	3	0	0	0	0.23397	3	2770	2702;2770;2820		28.495	14.588	1	137190			45697	7557	26334	26335	55571;55572;55573	55572					-0.014772407757391193
STSGISPNTPK	11	Unmodified	_STSGISPNTPK_					0	0	0		ENST00000430627.6_1_17:37618283-37618493:+|nuORF	ENST00000430627.6_1_17:37618283-37618493:+|nuORF	ENST00000430627.6_1_17:37618283-37618493:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7828979492188	2	544.782753	1087.55095	0.54701	0.000298	0.78598	0.00042819	1.333	0.00072619	544.783397768582	21.862	1.0534	21.813	21.29	22.343	-0.049377					47	37	2	0	0	0	0.39284	1	2897	2897		12.175	3.1985	1	104120			45698	10469	26335	26336	55574	55574					0.010679298840841511
STSGPPTISK	10	Unmodified	_STSGPPTISK_					0	0	0		ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.23529052734375	2	487.761289	973.508025	0.21663	0.00010566	0.4871	0.00023759	0.70373	0.00034325	487.7614461752466	22	0.81576	22	21.545	22.36	0					45	29	2	0	0	0	0.29613	1	3023	3023		23.79	3.3752	1	178560			45699	8165	26336	26337	55575	55575					0.020211598266769215
STSGPPTISK	10	Unmodified	_STSGPPTISK_					0	0	0		ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2350769042969	2	487.761289	973.508025	0.16889	8.2379E-05	0.43851	0.00021389	0.6074	0.00029627	487.7615083478242	22.054	0.62588	22.004	21.717	22.343	-0.049377					33	22	2	0	0	0	0.29613	1	3000	3000		18.373	3.1246	1	181590			45700	8165	26336	26337	55576	55576					0.020211598266769215
STSGTVINK	9	Unmodified	_STSGTVINK_					0	0	0		ENST00000535181.5_1_12:133448808-133463914:-|nuORF;ENST00000536196.1_1_12:133448709-133463914:-|nuORF;nc|ENSG00000072609|Q96EP1-5|CHFR;nc|ENSG00000072609|Q96EP1-3|CHFR;ENSG00000072609|ENST00000450056|CHFR;nc|ENSG00000072609|Q96EP1-4|CHFR;nc|ENSG00000072609|Q96EP1|CHFR	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7480773925781	2	453.748182	905.481811	-0.12846	-5.8287E-05	-0.058673	-2.6623E-05	-0.18713	-8.491E-05	453.7480986771179	15.249	0.42666	15.249	15.044	15.471	0					38	14	3	0	0	0	0.012386	2	950	950;997		75.761	21.595	1	560210			45701	985	26337	26338	55577;55578	55577					0.025288906551850232
STSGTVINK	9	Unmodified	_STSGTVINK_					0	0	0		ENST00000535181.5_1_12:133448808-133463914:-|nuORF;ENST00000536196.1_1_12:133448709-133463914:-|nuORF;nc|ENSG00000072609|Q96EP1-5|CHFR;nc|ENSG00000072609|Q96EP1-3|CHFR;ENSG00000072609|ENST00000450056|CHFR;nc|ENSG00000072609|Q96EP1-4|CHFR;nc|ENSG00000072609|Q96EP1|CHFR	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.74810791015625	2	453.748182	905.481811	-0.036998	-1.6788E-05	-0.035614	-1.616E-05	-0.072612	-3.2947E-05	453.7480907285208	15.333	0.48165	15.223	14.982	15.464	-0.10982					41	16	3	0	0	0	0.015924	2	983	983;1030		70.332	10.258	1	563850			45702	985	26337	26338	55579;55580	55579					0.025288906551850232
STSGTVINK	9	Unmodified	_STSGTVINK_					0	0	0		ENST00000535181.5_1_12:133448808-133463914:-|nuORF;ENST00000536196.1_1_12:133448709-133463914:-|nuORF;nc|ENSG00000072609|Q96EP1-5|CHFR;nc|ENSG00000072609|Q96EP1-3|CHFR;ENSG00000072609|ENST00000450056|CHFR;nc|ENSG00000072609|Q96EP1-4|CHFR;nc|ENSG00000072609|Q96EP1|CHFR	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	ENST00000535181.5_1_12:133448808-133463914:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.7480773925781	2	453.748182	905.481811	-0.12016	-5.4524E-05	-0.061233	-2.7785E-05	-0.1814	-8.2309E-05	453.74807428420706	15.326	0.41817	15.261	15.069	15.487	-0.064414					34	13	3	0	0	0	0.0028542	1	987	987		103.42	27.659	1	669030			45703	985	26337	26338	55581	55581					0.025288906551850232
STSIQVIVK	9	Unmodified	_STSIQVIVK_					0	0	0		ENSG00000076242|ENST00000231790|MLH1;MLH1|p.I501Nfs*10|1|0.49|ENSG00000076242|chr3:37028873-37028874|-/TAACCTCA|frameshift_variant;ENST00000458205.6_1_3:37035370-37038667:+|nuORF;ENST00000454028.5_1_3:37035144-37045944:+|nuORF;ENST00000435176.5_1_3:37035370-37045944:+|nuORF;ENST00000539477.5_1_3:37035370-37053334:+|nuORF;ENST00000466900.5_1_3:37035370-37047454:+|nuORF	ENSG00000076242|ENST00000231790|MLH1	ENSG00000076242|ENST00000231790|MLH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.28704833984375	2	487.797675	973.580796	0.17927	8.7449E-05	-1.8285	-0.00089192	-1.6492	-0.00080447	487.79678406030575	38.299	0.59035	38.299	38.007	38.597	0					32	20	2	0	0	0	0.15763	1	7934	7934		29.841	5.82	1	434830			45704	1060	26338	26339	55582	55582					0.0929491362007866
STSIQVIVK	9	Unmodified	_STSIQVIVK_					0	0	0		ENSG00000076242|ENST00000231790|MLH1;MLH1|p.I501Nfs*10|1|0.49|ENSG00000076242|chr3:37028873-37028874|-/TAACCTCA|frameshift_variant;ENST00000458205.6_1_3:37035370-37038667:+|nuORF;ENST00000454028.5_1_3:37035144-37045944:+|nuORF;ENST00000435176.5_1_3:37035370-37045944:+|nuORF;ENST00000539477.5_1_3:37035370-37053334:+|nuORF;ENST00000466900.5_1_3:37035370-37047454:+|nuORF	ENSG00000076242|ENST00000231790|MLH1	ENSG00000076242|ENST00000231790|MLH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2870788574219	2	487.797675	973.580796	0.34373	0.00016767	-1.8779	-0.00091604	-1.5342	-0.00074837	487.79684615519454	38.22	0.52602	38.31	38.042	38.568	0.090881					33	18	2	0	0	0	0.21447	1	7908	7908		21.537	3.3906	1	507830			45705	1060	26338	26339	55583	55583					0.0929491362007866
STSLFNKKRKG	11	Unmodified	_STSLFNKKRKG_					0	0	0			REV__nc|ENSG00000104218|Q1MSJ5|CSPP1	REV__nc|ENSG00000104218|Q1MSJ5|CSPP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3684692382812	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.16	1	113.16	112.66	113.66	0								0	0	0	0.38137	1	29396	29396		1.0715	0.5467	1		+		45706	22923	26339	26340	55584	55584					0.10339555100040343
STSLLGQKK	9	Unmodified	_STSLLGQKK_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.789794921875	2	481.287474	960.560395	0.038352	1.8459E-05	0.90549	0.0004358	0.94385	0.00045426	481.28789301754244	16.38	0.3746	16.265	16.02	16.395	-0.11434					19	12	2	0	0	0	0.25431	1	1292	1292		9.3831	5.0539	1	37209			45707	2654	26340	26341	55585	55585					0.07853742960287491
STSLLGQKK	9	Unmodified	_STSLLGQKK_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7893371582031	2	481.287474	960.560395	0.17945	8.6368E-05	0.73469	0.0003536	0.91415	0.00043997	481.2879320446013	16.305	0.37576	16.243	16.006	16.382	-0.062534					22	12	3	0	0	0	0.26031	1	1270	1270		3.5965	0.70727	1	49068			45708	2654	26340	26341	55586	55586					0.07853742960287491
STSLQVAEGP	10	Unmodified	_STSLQVAEGP_					0	0	0		ENST00000556431.1_1_14:105222603-105223098:+|nuORF	ENST00000556431.1_1_14:105222603-105223098:+|nuORF	ENST00000556431.1_1_14:105222603-105223098:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7724304199219	2	494.750921	987.48729	0.14658	7.2519E-05	1.5728	0.00077812	1.7193	0.00085064	494.7516882008529	14.78	0.48652	14.674	14.394	14.881	-0.10622					30	16	2	0	0	0	0.30555	1	830	830		20.415	1.1575	1	121240			45709	11856	26341	26342	55587	55587					-0.006954305530030069
STSNSFNLK	9	Unmodified	_STSNSFNLK_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2511901855469	2	499.251089	996.487624	0.18718	9.345E-05	0.097762	4.8808E-05	0.28494	0.00014226	499.2511138845092	27.426	1.178	27.426	27.063	28.241	0					134	40	5	0	0	0	1.7286999999999998E-32	3	4643	4596;4643;4689		250.47	185.23	1	3619100			45710	6700	26342	26343	55588;55589;55590	55589					-0.010760108331396623
STSNSFNLK	9	Unmodified	_STSNSFNLK_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2511901855469	2	499.251089	996.487624	0.12641	6.3109E-05	0.18511	9.2415E-05	0.31151	0.00015552	499.25112707418253	27.451	1.1346	27.43	27.041	28.176	-0.021412					132	39	5	0	0	0	1.7286999999999998E-32	2	4656	4606;4656		250.47	185.23	1	3469100			45711	6700	26342	26343	55591;55592	55592					-0.010760108331396623
STSNSFNLK	9	Unmodified	_STSNSFNLK_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2511901855469	2	499.251089	996.487624	0.1101	5.4968E-05	0.13741	6.8604E-05	0.24751	0.00012357	499.25112453999566	27.44	1.2399	27.429	27.07	28.31	-0.01156					136	43	5	0	0	0	7.7482E-24	3	4645	4599;4645;4691		234.93	173.57	1	4072800			45712	6700	26342	26343	55593;55594;55595	55594					-0.010760108331396623
STSPLTLMR	9	Oxidation (M)	_STSPLTLM(Oxidation (M))R_		STSPLTLM(1)R		STSPLTLM(130)R	0	0	1		ENST00000546488.5_3_12:51394180-51402371:-|nuORF;ENST00000550329.1_1_12:51402209-51402389:-|nuORF	ENST00000546488.5_3_12:51394180-51402371:-|nuORF	ENST00000546488.5_3_12:51394180-51402371:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.27044677734375	2	511.270967	1020.52738	-0.096855	-4.9519E-05	-0.057057	-2.9172E-05	-0.15391	-7.8691E-05	511.27086714910916	35.369	1.0417	35.369	34.971	36.012	0					86	37	3	0	0	0	0.00078391	3	7045	7045;7094;7103		125.53	73.261	1	5449300			45713	11760	26343	26344	55596;55597;55598	55596		960			0.01793792845921871
STSPLTLMR	9	Oxidation (M)	_STSPLTLM(Oxidation (M))R_		STSPLTLM(1)R		STSPLTLM(130)R	0	0	1		ENST00000546488.5_3_12:51394180-51402371:-|nuORF;ENST00000550329.1_1_12:51402209-51402389:-|nuORF	ENST00000546488.5_3_12:51394180-51402371:-|nuORF	ENST00000546488.5_3_12:51394180-51402371:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2705078125	2	511.270967	1020.52738	-0.18485	-9.4507E-05	-0.166	-8.4871E-05	-0.35085	-0.00017938	511.27088997971214	35.276	1.1773	35.351	34.933	36.11	0.075306					106	42	5	0	0	0	0.00078391	1	7033	7033		125.53	73.261	1	5341400			45714	11760	26343	26344	55599	55599		960			0.01793792845921871
STSPLTLMR	9	Oxidation (M)	_STSPLTLM(Oxidation (M))R_		STSPLTLM(1)R		STSPLTLM(130)R	0	0	1		ENST00000546488.5_3_12:51394180-51402371:-|nuORF;ENST00000550329.1_1_12:51402209-51402389:-|nuORF	ENST00000546488.5_3_12:51394180-51402371:-|nuORF	ENST00000546488.5_3_12:51394180-51402371:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2705078125	2	511.270967	1020.52738	-0.46071	-0.00023555	0.15267	7.8056E-05	-0.30804	-0.00015749	511.2710683759204	35.255	1.0246	35.333	34.975	36	0.077381					100	36	5	0	0	0	0.00078391	1	7014	7014		125.53	73.261	1	5147900			45715	11760	26343	26344	55600	55600		960			0.01793792845921871
STSQSPPIK	9	Unmodified	_STSQSPPIK_					0	0	0		ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7560119628906	2	472.756007	943.497461	0.062623	2.9606E-05	-0.80767	-0.00038183	-0.74504	-0.00035222	472.75579203984574	17.418	1.0098	17.418	17.041	18.051	0					51	34	2	0	0	0	0.24467	1	1669	1669		17.113	5.6182	1	116400			45716	3542	26344	26345	55601	55601					0.023451771722307058
STSQSPPIK	9	Unmodified	_STSQSPPIK_					0	0	0		ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.75579833984375	2	472.756007	943.497461	0.17021	8.0467E-05	-0.60018	-0.00028374	-0.42997	-0.00020327	472.7558028418592	17.634	0.96263	17.573	17.18	18.142	-0.060429					53	33	2	0	0	0	0.23612	1	1719	1719		18.373	8.2992	1	137390			45717	3542	26344	26345	55602	55602					0.023451771722307058
STSQSPPIK	9	Unmodified	_STSQSPPIK_					0	0	0		ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	472.756007	943.497461	0.0014336	6.7774E-07	0.07128	3.3698E-05	0.072714	3.4376E-05	472.7558408044094	17.626	0.84683	17.508	17.081	17.928	-0.11739	0.0082087	0.00033233	NaN	18.373	48	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126680			45718	3542	26344	26345							0.023451771722307058
STSQTFIYK	9	Unmodified	_STSQTFIYK_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7770385742188	2	537.776939	1073.53933	0.69652	0.00037457	-0.087541	-4.7078E-05	0.60898	0.0003275	537.7767247883501	33.638	0.85428	33.638	33.365	34.22	0					91	30	4	0	0	0	0.00054549	2	6558	6558;6612		128.57	84.715	1	1368700			45719	310	26345	26346	55603;55604	55603					0.005497328607589225
STSQTFIYK	9	Unmodified	_STSQTFIYK_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7772827148438	2	537.776939	1073.53933	0.74415	0.00040019	0.033904	1.8233E-05	0.77806	0.00041842	537.7767391962577	33.485	0.88044	33.551	33.323	34.203	0.06636					90	31	5	0	0	0	0.0013864	3	6523	6475;6523;6573		117.84	73.979	1	1441500			45720	310	26345	26346	55605;55606;55607	55606					0.005497328607589225
STSQTFIYK	9	Unmodified	_STSQTFIYK_					0	0	0		nc|ENSG00000004487|O60341|KDM1A;ENSG00000004487|ENST00000400181|KDM1A	nc|ENSG00000004487|O60341|KDM1A	nc|ENSG00000004487|O60341|KDM1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7774047851562	2	537.776939	1073.53933	0.3346	0.00017994	0.33755	0.00018153	0.67215	0.00036147	537.7769614842539	33.498	0.82526	33.565	33.328	34.153	0.0667					81	29	4	0	0	0	0.0035713	3	6527	6479;6527;6590		97.741	61.614	1	1432100			45721	310	26345	26346	55608;55609;55610	55609					0.005497328607589225
STSRVRLFY	9	Unmodified	_STSRVRLFY_					0	0	0		ENSG00000156973|ENST00000287600|PDE6D	ENSG00000156973|ENST00000287600|PDE6D	ENSG00000156973|ENST00000287600|PDE6D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8113403320312	2	564.811648	1127.60874	-0.10279	-5.8056E-05	-0.26208	-0.00014803	-0.36487	-0.00020608	564.8114483801552	38.789	0.83322	38.789	38.46	39.294	0					81	29	4	0	0	0	0.013404	3	8120	8072;8120;8172		74.2	50.179	1	1558900			45722	5272	26346	26347	55611;55612;55613	55612					0.050042366001889604
STSSESSLIIK	11	Unmodified	_STSSESSLIIK_					0	0	0		NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant;ENSG00000113971|ENST00000337331|NPHP3;nc|ENSG00000113971|Q7Z494-3|NPHP3;nc|ENSG00000113971|Q7Z494-6|NPHP3	NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant	NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8568115234375	2	576.311343	1150.60813	0.17461	0.00010063	-0.96352	-0.00055529	-0.78891	-0.00045466	576.3108531360915	35.541	0.47236	35.541	35.328	35.8	0					28	16	2	0	0	0	0.32344	1	7131	7131		19.626	9.552	1	497220			45723	2541	26347	26348	55614	55614					0.03885352369820794
STSSESSLIIK	11	Unmodified	_STSSESSLIIK_					0	0	0		NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant;ENSG00000113971|ENST00000337331|NPHP3;nc|ENSG00000113971|Q7Z494-3|NPHP3;nc|ENSG00000113971|Q7Z494-6|NPHP3	NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant	NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8563842773438	2	576.311343	1150.60813	-0.20852	-0.00012017	-0.12502	-7.2048E-05	-0.33354	-0.00019222	576.311137637584	35.422	0.52572	35.499	35.283	35.809	0.077381					25	17	2	0	0	0	0.32813	1	7096	7096		12.175	2.7916	1	355540			45724	2541	26347	26348	55615	55615					0.03885352369820794
STSSLAGIPSP	11	Unmodified	_STSSLAGIPSP_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.767578125	2	508.766571	1015.51859	0.32913	0.00016745	0.56909	0.00028953	0.89821	0.00045698	508.7667065373276	17.075	0.91248	17.015	16.676	17.588	-0.060429					91	32	4	0	0	0	0.44828	1	1580	1580		4.897	0.141	1	390180			45725	2557	26348	26349	55616	55616					0.011451424810957178
STSSLLLRIRK	11	Unmodified	_STSSLLLRIRK_					0	0	0		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.7740173339844	3	425.269866	1272.78777	-0.78381	-0.00033333	-0.6069	-0.00025809	-1.3907	-0.00059143	425.2697389689247	34.698	0.30537	34.775	34.561	34.866	0.077377					18	10	2	0	0	0	0.33316	1	6840	6840		0.92553	0.36236	1	93814			45726	4802	26349	26350	55617	55617					0.1622870116825652
STSSPYVSK	9	Unmodified	_STSSPYVSK_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.24029541015625	2	478.24019	954.465826	0.14446	6.9085E-05	-0.064488	-3.0841E-05	0.079969	3.8244E-05	478.24012405182623	17.303	1.177	17.303	16.981	18.158	0					175	40	7	0	0	0	0.00051734	3	1590	1551;1590;1638		128.93	66.36	1	2150500			45727	4054	26350	26351	55618;55619;55620	55619					-0.013228155817046172
STSSPYVSK	9	Unmodified	_STSSPYVSK_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2402038574219	2	478.24019	954.465826	0.05312	2.5404E-05	0.067443	3.2254E-05	0.12056	5.7658E-05	478.24017951535257	17.488	1.1243	17.371	17.026	18.151	-0.11739					172	39	8	0	0	0	0.0031966	4	1638	1593;1638;1681;1724		100.71	50.776	1	2357700			45728	4054	26350	26351	55621;55622;55623;55624	55622					-0.013228155817046172
STSSPYVSK	9	Unmodified	_STSSPYVSK_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-15|SYTL2;nc|ENSG00000137501|Q9HCH5-14|SYTL2;nc|ENSG00000137501|Q9HCH5-6|SYTL2;nc|ENSG00000137501|Q9HCH5|SYTL2;nc|ENSG00000137501|Q9HCH5-13|SYTL2;ENST00000438197.2_1_11:85444955-85468786:-|nuORF	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2402038574219	2	478.24019	954.465826	0.24379	0.00011659	-0.14943	-7.1462E-05	0.094361	4.5127E-05	478.2400643091231	17.403	1.1741	17.342	17.051	18.225	-0.060429					184	41	7	0	0	0	0.0019382	4	1628	1578;1628;1672;1717		110.79	52.114	1	2322400			45729	4054	26350	26351	55625;55626;55627;55628	55626					-0.013228155817046172
STSSSFLEV	9	Unmodified	_STSSSFLEV_					0	0	0		nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.78173828125	2	478.732197	955.449842	0.14165	6.7814E-05	-0.25438	-0.00012178	-0.11272	-5.3964E-05	478.73205102911214	57.884	0.55291	57.884	57.634	58.187	0					34	19	2	0	0	0	0.090484	1	14033	14033		54.774	12.679	1	351450			45730	487	26351	26352	55629	55629					-0.029665218185982667
STSSSFLEV	9	Unmodified	_STSSSFLEV_					0	0	0		nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7322998046875	2	478.732197	955.449842	0.27636	0.0001323	-0.499	-0.00023889	-0.22263	-0.00010658	478.731923345472	57.746	0.4857	57.832	57.598	58.084	0.085617					35	17	3	0	0	0	0.29638	1	14008	14008		9.3831	0.035688	1	381530			45731	487	26351	26352	55630	55630					-0.029665218185982667
STSSSFLEV	9	Unmodified	_STSSSFLEV_					0	0	0		nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2842102050781	2	478.732197	955.449842	0.31906	0.00015274	-0.30858	-0.00014773	0.010482	5.018E-06	478.73192261191497	57.914	0.47719	57.897	57.741	58.218	-0.0172					31	17	2	0	0	0	0.21389	1	13970	13970		25.399	9.5521	1	409250			45732	487	26351	26352	55631	55631					-0.029665218185982667
STSSVIMMK	9	2 Oxidation (M)	_STSSVIM(Oxidation (M))M(Oxidation (M))K_		STSSVIM(1)M(1)K		STSSVIM(69)M(69)K	0	0	2		ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.24359130859375	2	508.24356	1014.47257	0.11331	5.759E-05	-0.36085	-0.0001834	-0.24754	-0.00012581	508.24351088212813	18.992	0.92979	18.992	18.563	19.493	0					79	32	4	0	0	0	0.016723	2	2078	2078;2129		69.105	69.105	1	307360			45733	11494	26352	26353	55632;55633	55632		956;957			-0.03408962016987971
STSSVIMMK	9	2 Oxidation (M)	_STSSVIM(Oxidation (M))M(Oxidation (M))K_		STSSVIM(1)M(1)K		STSSVIM(69)M(69)K	0	0	2		ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.24365234375	2	508.24356	1014.47257	0.12108	6.1537E-05	-0.90221	-0.00045854	-0.78113	-0.00039701	508.243551814811	19.089	0.96371	18.972	18.614	19.577	-0.11739					102	33	5	0	0	0	0.016723	1	2130	2130		69.105	42.837	1	380130			45734	11494	26352	26353	55634	55634		956;957			-0.03408962016987971
STSSVIMMK	9	2 Oxidation (M)	_STSSVIM(Oxidation (M))M(Oxidation (M))K_		STSSVIM(1)M(1)K		STSSVIM(69)M(69)K	0	0	2		ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	ENST00000521804.1_1_8:142264568-142318349:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2435607910156	2	508.24356	1014.47257	0.079385	4.0347E-05	-0.6227	-0.00031648	-0.54331	-0.00027614	508.24355306939657	19.101	0.965	19.043	18.629	19.594	-0.057213					95	33	4	0	0	0	0.016723	2	2112	2112;2159		69.105	36.319	1	364980			45735	11494	26352	26353	55635;55636	55635		956;957			-0.03408962016987971
STSTSIKVK	9	Unmodified	_STSTSIKVK_					0	0	0		ENSG00000135974|ENST00000258457|C2orf49;nc|nan|Q9BVC5-2|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7563781738281	2	475.779482	949.544411	-0.013378	-6.3652E-06	0.42239	0.00020097	0.40901	0.0001946	475.77978207591093	14.738	0.22649	14.634	14.516	14.742	-0.10466					17	7	3	0	0	0	0.25527	1	799	799		8.7454	6.1679	1	95167			45736	3931	26353	26354	55637	55637					0.06762036723375786
STSTSIKVK	9	Unmodified	_STSTSIKVK_					0	0	0		ENSG00000135974|ENST00000258457|C2orf49;nc|nan|Q9BVC5-2|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	ENSG00000135974|ENST00000258457|C2orf49	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7560729980469	2	475.779482	949.544411	-0.071071	-3.3814E-05	0.84254	0.00040086	0.77146	0.00036705	475.78001831659395	14.776	0.22536	14.712	14.564	14.79	-0.064413					12	7	2	0	0	0	0.26099	1	800	800		2.9952	2.2016	1	106510			45737	3931	26353	26354	55638	55638					0.06762036723375786
STSVAHCI	8	Unmodified	_STSVAHCI_					0	0	0			REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	REV__nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.53656005859375	2	409.19727	816.379988	-0.44883	-0.00018366	2.6574	0.0010874	2.2086	0.00090374	409.19925275622865	28.116	0.1761	28.116	28.065	28.241	0					7	5	2	0	0	0	0.33995	1	4852	4852		15.768	6.4208	1	20528	+		45738	16753	26354	26355	55639	55639					-0.03554678968214375
STSVGFFFR	9	Unmodified	_STSVGFFFR_					0	0	0		ENSG00000206432|ENST00000383490|TMEM200C	ENSG00000206432|ENST00000383490|TMEM200C	ENSG00000206432|ENST00000383490|TMEM200C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.78759765625	2	524.266542	1046.51853	0.41452	0.00021732	0.076466	4.0089E-05	0.49099	0.00025741	524.2666727419981	59.209	0.50554	59.209	59.055	59.56	0					25	17	2	0	0	0	0.20167	1	14419	14419		29.082	11.969	1	173570			45739	8320	26355	26356	55640	55640					-0.0028681272824542248
STSVGFFFR	9	Unmodified	_STSVGFFFR_					0	0	0		ENSG00000206432|ENST00000383490|TMEM200C	ENSG00000206432|ENST00000383490|TMEM200C	ENSG00000206432|ENST00000383490|TMEM200C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7875366210938	2	524.266542	1046.51853	0.45288	0.00023743	0.14507	7.6058E-05	0.59796	0.00031349	524.266598801238	59.148	0.53186	59.239	59.015	59.547	0.091305					30	18	3	0	0	0	0.22674	1	14369	14369		17.113	9.2027	1	193630			45740	8320	26355	26356	55641	55641					-0.0028681272824542248
STTDKRVV	8	Unmodified	_STTDKRVV_					0	0	0			REV__ENSG00000155897|ENST00000286355|ADCY8	REV__ENSG00000155897|ENST00000286355|ADCY8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.2561340332031	2	453.256174	904.497795	0.10987	4.9799E-05	-0.27858	-0.00012627	-0.16871	-7.6469E-05	453.2561111112707	21.938	0.65096	21.938	21.627	22.278	0					48	23	3	0	0	0	0.4354	1	3025	3025		10.824	1.4408	1	213390	+		45741	16717	26356	26357	55642	55642					0.0417259689210141
STTDKRVV	8	Unmodified	_STTDKRVV_					0	0	0			REV__ENSG00000155897|ENST00000286355|ADCY8	REV__ENSG00000155897|ENST00000286355|ADCY8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.2563781738281	2	453.256174	904.497795	0.050551	2.2912E-05	-0.49881	-0.00022609	-0.44826	-0.00020318	453.2559735253483	21.952	0.70943	21.902	21.633	22.343	-0.049377					43	25	2	0	0	0	0.43758	1	3047	3047		10.074	1.3285	1	221890	+		45742	16717	26356	26357	55643	55643					0.0417259689210141
STTIYLRKGDL	11	Unmodified	_STTIYLRKGDL_					0	0	0			REV__ENST00000455397.5_1_1:151337021-151341586:-|nuORF	REV__ENST00000455397.5_1_1:151337021-151341586:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.5824890136719	3	422.906594	1265.69795	0.28977	0.00012254	2.1692	0.00091738	2.459	0.0010399	423.2419677113506	37.551	0.23163	37.551	37.503	37.735	0					10	7	2	0	0	0	0.33146	1	7776	7776		4.1166	0.79699	1	123270	+		45743	16177	26357	26358	55644	55644					0.0757302676904601
STTPKALGK	9	Unmodified	_STTPKALGK_					0	0	0			REV__ENSG00000074590|ENST00000261402|NUAK1	REV__ENSG00000074590|ENST00000261402|NUAK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2477722167969	2	451.768917	901.523281	-0.086183	-3.8935E-05	0.1379	6.2299E-05	0.051718	2.3365E-05	451.7690195872652	25.408	0.26397	25.352	25.25	25.514	-0.055931					12	8	2	0	0	0	0.2451	1	4092	4092		15.847	1.2655	1	39949	+		45744	13790	26358	26359	55645	55645					0.06858071414524147
STTPKALGK	9	Unmodified	_STTPKALGK_					0	0	0			REV__ENSG00000074590|ENST00000261402|NUAK1	REV__ENSG00000074590|ENST00000261402|NUAK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2479248046875	2	451.768917	901.523281	-0.16852	-7.6132E-05	0.80928	0.00036561	0.64076	0.00028947	451.7692073493605	25.445	0.27847	25.413	25.265	25.543	-0.031408					14	9	2	0	0	0	0.22596	1	4091	4091		10.824	3.5347	1	41308	+		45745	13790	26358	26359	55646	55646					0.06858071414524147
STTQVVGILK	10	Unmodified	_STTQVVGILK_					0	0	0		ENSG00000198898|ENST00000361183|CAPZA2;ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3167114257812	2	523.316232	1044.61791	0.19021	9.9541E-05	-0.031522	-1.6496E-05	0.15869	8.3045E-05	523.3162054575228	42.418	0.81573	42.418	42.166	42.982	0					64	29	3	0	0	0	0.0044422	1	9213	9213		94.909	63.64	1	1628000			45746	8154	26359	26360	55647	55647					0.09738585165860059
STTQVVGILK	10	Unmodified	_STTQVVGILK_					0	0	0		ENSG00000198898|ENST00000361183|CAPZA2;ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3162841796875	2	523.316232	1044.61791	0.48131	0.00025188	-0.32361	-0.00016935	0.15769	8.2524E-05	523.3160359748423	42.266	0.8606	42.358	42.095	42.956	0.091362					71	30	3	0	0	0	0.010655	1	9218	9218		81.915	46.983	1	1721500			45747	8154	26359	26360	55648	55648					0.09738585165860059
STTQVVGILK	10	Unmodified	_STTQVVGILK_					0	0	0		ENSG00000198898|ENST00000361183|CAPZA2;ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	523.316232	1044.61791	0.39695	0.00020773	-0.30466	-0.00015943	0.092293	4.8298E-05	523.316051866503	42.346	0.7104	42.431	42.18	42.891	0.085197	0.028936	-6.4655E-05	NaN	94.909	63	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1614500			45748	8154	26359	26360							0.09738585165860059
STTRLIHR	8	Unmodified	_STTRLIHR_					0	0	0		ENST00000444472.5_1_9:101533219-101533276:-|nuORF	ENST00000444472.5_1_9:101533219-101533276:-|nuORF	ENST00000444472.5_1_9:101533219-101533276:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2306213378906	2	492.290882	982.567212	0.23259	0.0001145	-0.44025	-0.00021673	-0.20766	-0.00010223	492.28908635243107	22.36	0.4576	22.36	22.076	22.533	0					22	15	3	0	0	0	0.34272	1	3078	3078		7.9102	3.9658	1	46867			45749	10573	26360	26361	55649	55649					0.07523100631510715
STTTGHLIYK	10	Unmodified	_STTTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8040771484375	2	560.803488	1119.59242	0.10727	6.0157E-05	-0.13997	-7.8497E-05	-0.032702	-1.834E-05	560.8039364848199	23.462	1.6523	23.462	23.11	24.762	0					168	56	5	0	0	0	1.5864E-08	5	3438	3397;3438;3484;3533;3582		160.69	116.92	1	11733000			45750	5239	26361	26362	55650;55651;55652;55653;55654	55651					0.03741110643431966
STTTGHLIYK	10	Unmodified	_STTTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.80419921875	2	560.803488	1119.59242	0.23351	0.00013095	-0.31122	-0.00017453	-0.077712	-4.3581E-05	560.8039004874672	23.566	1.7186	23.493	23.153	24.872	-0.072559					190	59	5	0	0	0	1.5864E-08	6	3479	3436;3479;3522;3564;3610;3657		160.69	118.73	1	11363000			45751	5239	26361	26362	55655;55656;55657;55658;55659;55660	55656					0.03741110643431966
STTTGHLIYK	10	Unmodified	_STTTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8042602539062	2	560.803488	1119.59242	0.29571	0.00016583	-0.37027	-0.00020765	-0.074564	-4.1816E-05	560.8038500851421	23.563	1.6227	23.524	23.202	24.825	-0.038927					189	56	5	0	0	0	1.5864E-08	6	3473	3428;3473;3519;3562;3606;3660		160.69	118.73	1	11461000			45752	5239	26361	26362	55661;55662;55663;55664;55665;55666	55662					0.03741110643431966
STTTTQITK	9	Unmodified	_STTTTQITK_					0	0	0		nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;ENST00000462032.1_1_1:29424324-29436027:+|nuORF	nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7655944824219	2	490.766571	979.51859	0.085867	4.2141E-05	-1.0876	-0.00053375	-1.0017	-0.00049161	490.76590538375956	15.482	0.61012	15.482	15.232	15.842	0					62	20	4	0	0	0	0.11813	2	1027	1027;1081		35.612	10.621	1	397860			45753	12784	26362	26363	55667;55668	55667					0.028011424810870267
STTTTQITK	9	Unmodified	_STTTTQITK_					0	0	0		nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;ENST00000462032.1_1_1:29424324-29436027:+|nuORF	nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.76556396484375	2	490.766571	979.51859	0.12807	6.2851E-05	-0.90307	-0.0004432	-0.775	-0.00038034	490.76602435154376	15.591	0.66658	15.482	15.259	15.925	-0.10981					59	22	4	0	0	0	0.073988	2	1060	1060;1110		43.982	7.4756	1	413850			45754	12784	26362	26363	55669;55670	55669					0.028011424810870267
STTTTQITK	9	Unmodified	_STTTTQITK_					0	0	0		nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;ENST00000462032.1_1_1:29424324-29436027:+|nuORF	nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.765869140625	2	490.766571	979.51859	0.084009	4.1229E-05	-0.73798	-0.00036218	-0.65398	-0.00032095	490.7660842691877	15.567	0.58869	15.503	15.275	15.864	-0.064413					56	19	4	0	0	0	0.09758	2	1049	1049;1104		38.615	7.3464	1	467440			45755	12784	26362	26363	55671;55672	55671					0.028011424810870267
STTTTTHITK	10	Unmodified	_STTTTTHITK_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;ENST00000452150.6_1_6:131179278-131188835:-|nuORF;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3	nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.7907104492188	2	545.790578	1089.5666	0.12529	6.8381E-05	0.10706	5.8432E-05	0.23235	0.00012681	545.7904657050642	13.468	0.35117	13.468	13.309	13.66	0					43	11	5	0	0	0	0.020733	1	431	431		70.929	38.891	1	571910			45756	1142;1200	26363	26364	55673	55673					0.0254021640114388
STTTTTHITK	10	Unmodified	_STTTTTHITK_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;ENST00000452150.6_1_6:131179278-131188835:-|nuORF;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3	nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.7904052734375	2	545.790578	1089.5666	0.22167	0.00012098	-0.064509	-3.5208E-05	0.15716	8.5775E-05	545.7903825032802	13.526	0.5012	13.427	13.189	13.69	-0.09929					45	17	4	0	0	0	0.067194	1	448	448		55.249	33.712	1	569330			45757	1142;1200	26363	26364	55674	55674					0.0254021640114388
STTTTTHITK	10	Unmodified	_STTTTTHITK_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;ENST00000452150.6_1_6:131179278-131188835:-|nuORF;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3	nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.7904663085938	2	545.790578	1089.5666	0.20205	0.00011028	-0.12233	-6.6767E-05	0.079717	4.3509E-05	545.790378285203	13.547	0.55229	13.479	13.162	13.714	-0.067496					49	19	4	0	0	0	0.049822	1	450	450		59.052	32.784	1	497800			45758	1142;1200	26363	26364	55675	55675					0.0254021640114388
STVCLYRK	8	Unmodified	_STVCLYRK_					0	0	0			REV__ENST00000515773.5_1_6:43152048-43164205:+|nuORF;REV__ENSG00000112659|ENST00000252050|CUL9	REV__ENST00000515773.5_1_6:43152048-43164205:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.32080078125	2	485.262945	968.511337	0.3747	0.00018183	-2.3573	-0.0011439	-1.9826	-0.00096208	485.26201278490737	57.149	0.1833	57.149	57.09	57.273	0					9	6	2	0	0	0	0.33245	1	13800	13800		13.508	0.97634	1	157850	+		45759	21848;14783	26364	26365	55676	55676					0.02582131399674381
STVEKIAMK	9	Oxidation (M)	_STVEKIAM(Oxidation (M))K_		STVEKIAM(1)K		STVEKIAM(63)K	0	0	1		SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant;SEC14L1|p.V620Efs*51|1|0.16|ENSG00000129657|chr17:77212192-77212193|-/TCTGAAAAAG|frameshift_variant;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.7812805175781	2	511.781167	1021.54778	0.16086	8.2324E-05	-2.3966	-0.0012265	-2.2357	-0.0011442	511.7812750505967	16.117	0.70717	16.117	15.867	16.574	0					96	24	5	0	0	0	0.022205	1	1256	1256		63.227	33.387	1	622220			45760	3434	26365	26366	55677	55677		435			0.037869635057404594
STVESPSEPG	10	Unmodified	_STVESPSEPG_					0	0	0		ENST00000497057.1_1_1:201435546-201435651:-|nuORF	ENST00000497057.1_1_1:201435546-201435651:-|nuORF	ENST00000497057.1_1_1:201435546-201435651:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.771484375	2	495.224736	988.43492	0.058686	2.9063E-05	1.592	0.00078841	1.6507	0.00081748	495.2263242030729	15.016	0.36797	14.952	14.76	15.128	-0.064413					24	12	3	0	0	0	0.3156	1	857	857		10.824	0	1	73133			45761	11245	26366	26367	55678	55678					-0.05976013686608894
STVESPSEPG	10	Unmodified	_STVESPSEPG_					0	0	0		ENST00000497057.1_1_1:201435546-201435651:-|nuORF	ENST00000497057.1_1_1:201435546-201435651:-|nuORF	ENST00000497057.1_1_1:201435546-201435651:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	495.224736	988.43492	0.11205	5.5489E-05	0.42721	0.00021157	0.53926	0.00026705	495.22618074499934	14.889	0.28279	14.889	14.729	15.012	0	-0.021104	-0.00055764	NaN	10.824	23	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65656			45762	11245	26366	26367							-0.05976013686608894
STVESPSEPG	10	Unmodified	_STVESPSEPG_					0	0	0		ENST00000497057.1_1_1:201435546-201435651:-|nuORF	ENST00000497057.1_1_1:201435546-201435651:-|nuORF	ENST00000497057.1_1_1:201435546-201435651:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	495.224736	988.43492	0.17149	8.4928E-05	0.54614	0.00027046	0.71763	0.00035539	495.22642842524385	15	0.36197	14.89	14.706	15.068	-0.10981	-0.020448	-0.00043985	NaN	10.824	27	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57992			45763	11245	26366	26367							-0.05976013686608894
STVGAGAYAYK	11	Unmodified	_STVGAGAYAYK_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-4|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2749633789062	2	544.274564	1086.53457	0.55935	0.00030444	-0.14285	-7.7748E-05	0.4165	0.00022669	544.2747719447134	30.175	1.6655	30.175	29.888	31.553	0					146	59	5	0	0	0	6.2975E-13	5	5536	5444;5491;5536;5579;5622		171.46	109.86	1	18490000			45764	5251	26367	26368	55679;55680;55681;55682;55683	55681					-0.005231512820046191
STVGAGAYAYK	11	Unmodified	_STVGAGAYAYK_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-4|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2748413085938	2	544.274564	1086.53457	0.6494	0.00035345	-0.24761	-0.00013477	0.40179	0.00021868	544.2747072194927	30.205	1.655	30.233	29.873	31.528	0.027946					146	58	5	0	0	0	1.5275E-12	6	5482	5434;5482;5525;5569;5612;5665		159.1	99.732	1	17931000			45765	5251	26367	26368	55684;55685;55686;55687;55688;55689	55685					-0.005231512820046191
STVGAGAYAYK	11	Unmodified	_STVGAGAYAYK_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-4|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2750854492188	2	544.274564	1086.53457	0.29368	0.00015984	0.14607	7.9504E-05	0.43975	0.00023935	544.2749682442371	30.191	1.3735	30.218	29.894	31.267	0.027157					131	48	5	0	0	0	6.2975E-13	5	5531	5438;5488;5531;5574;5616		171.46	109.86	1	18868000			45766	5251	26367	26368	55690;55691;55692;55693;55694	55692					-0.005231512820046191
STVGLPTVLEK	11	Unmodified	_STVGLPTVLEK_					0	0	0		ENSG00000113790|ENST00000231887|EHHADH;nc|ENSG00000113790|Q08426-2|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.3662719726562	2	572.334621	1142.65469	0.3815	0.00021835	0.38908	0.00022268	0.77058	0.00044103	572.3348921231616	52.239	0.45628	52.289	51.985	52.441	0.050575					38	16	4	0	0	0	0.29849	1	12238	12238		28.234	5.4973	1	356620			45767	2531	26368	26369	55695	55695					0.08906836991741329
STVGLPTVLEK	11	Unmodified	_STVGLPTVLEK_					0	0	0		ENSG00000113790|ENST00000231887|EHHADH;nc|ENSG00000113790|Q08426-2|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.3660888671875	2	572.334621	1142.65469	0.064756	3.7062E-05	0.98879	0.00056592	1.0535	0.00060298	572.3351436020502	52.275	0.48784	52.275	51.982	52.469	-0.00081253					37	17	3	0	0	0	0.23457	1	12243	12243		46.022	16.941	1	418130			45768	2531	26368	26369	55696	55696					0.08906836991741329
STVGSAISRK	10	Unmodified	_STVGSAISRK_					0	0	0		nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.28863525390625	2	503.288005	1004.56146	0.19306	9.7166E-05	0.43077	0.0002168	0.62383	0.00031397	503.28831431245095	16.264	0.53964	16.264	16.035	16.574	0					40	18	3	0	0	0	0.22625	1	1261	1261		29.437	7.9002	1	172200			45769	1667	26369	26370	55697	55697					0.059359573291771994
STVGSAISRK	10	Unmodified	_STVGSAISRK_					0	0	0		nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	nc|ENSG00000101150|O43399-6|TPD52L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2886047363281	2	503.288005	1004.56146	0.23483	0.00011819	0.45966	0.00023134	0.69449	0.00034953	503.2883070950021	16.249	0.46196	16.186	16.006	16.468	-0.062534					38	15	3	0	0	0	0.17571	1	1266	1266		35.612	15.198	1	160920			45770	1667	26369	26370	55698	55698					0.059359573291771994
STVHNTHQPQ	10	Unmodified	_STVHNTHQPQ_					0	0	0		nc|ENSG00000100767|O95428-4|PAPLN;nc|ENSG00000100767|O95428-6|PAPLN;nc|ENSG00000100767|O95428-5|PAPLN;ENSG00000100767|ENST00000644200|PAPLN	nc|ENSG00000100767|O95428-4|PAPLN	nc|ENSG00000100767|O95428-4|PAPLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.775146484375	2	574.775793	1147.53703	0.36145	0.00020775	0.059855	3.4403E-05	0.4213	0.00024216	574.7755455926143	24.428	0.55628	24.355	24.055	24.612	-0.072559					32	18	2	0	0	0	0.36368	1	3728	3728		10.151	0.76745	1	184670			45771	1630	26370	26371	55699	55699					-0.030833028243250737
STVHNTHQPQ	10	Unmodified	_STVHNTHQPQ_					0	0	0		nc|ENSG00000100767|O95428-4|PAPLN;nc|ENSG00000100767|O95428-6|PAPLN;nc|ENSG00000100767|O95428-5|PAPLN;ENSG00000100767|ENST00000644200|PAPLN	nc|ENSG00000100767|O95428-4|PAPLN	nc|ENSG00000100767|O95428-4|PAPLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.7756958007812	2	574.775793	1147.53703	0.12491	7.1796E-05	-0.16138	-9.276E-05	-0.036472	-2.0963E-05	574.7754933904333	24.397	0.57183	24.358	24.02	24.591	-0.038927					37	19	3	0	0	0	0.36368	1	3715	3715		10.151	0	1	186610			45772	1630	26370	26371	55700	55700					-0.030833028243250737
STVIFAVVK	9	Unmodified	_STVIFAVVK_					0	0	0		ENSG00000128285|ENST00000249016|MCHR1	ENSG00000128285|ENST00000249016|MCHR1	ENSG00000128285|ENST00000249016|MCHR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.29693603515625	2	482.29731	962.580068	0.12302	5.9333E-05	-1.4323	-0.00069078	-1.3092	-0.00063145	482.2964953922264	51.801	0.89314	51.803	51.579	52.472	0.002079					78	32	3	0	0	0	0.00011048	4	12160	12093;12134;12160;12187		139.14	93.439	1	4119700			45773	3358	26371	26372	55701;55702;55703;55704	55703					0.09728118971031563
STVIFAVVK	9	Unmodified	_STVIFAVVK_					0	0	0		ENSG00000128285|ENST00000249016|MCHR1	ENSG00000128285|ENST00000249016|MCHR1	ENSG00000128285|ENST00000249016|MCHR1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	482.29731	962.580068	0.18777	9.0561E-05	-1.5749	-0.00075959	-1.3872	-0.00066903	482.29644755894367	51.776	0.73219	51.776	51.592	52.324	0	-0.025969	-4.7757E-05	NaN	139.14	69	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3682700			45774	3358	26371	26372							0.09728118971031563
STVLRIERC	9	Unmodified	_STVLRIERC_					0	0	0		nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	nc|ENSG00000154864|Q9H5I5-2|PIEZO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8634643554688	2	538.797683	1075.58081	0.3354	0.00018071	1.7098	0.00092124	2.0452	0.001102	538.7979106317181	94.889	0.10127	94.972	94.917	95.019	0.082779					13	9	2	0	0	0	0.25938	1	25331	25331		4.3292	0	1	52234			45775	5150	26372	26373	55705	55705					0.046045903484582595
STVPPSLRK	9	Unmodified	_STVPPSLRK_					0	0	0		ENSG00000213676|ENST00000375203|ATF6B;nc|ENSG00000213676|Q99941-2|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	ENSG00000213676|ENST00000375203|ATF6B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.7959899902344	2	492.795466	983.57638	0.49851	0.00024566	-0.55967	-0.00027581	-0.061169	-3.0144E-05	492.7952721395079	19.966	2.5045	19.85	19.284	21.789	-0.11592					127	88	3	0	0	0	0.27726	1	2525	2525		12.241	2.8575	1	207120			45776	8359	26373	26374	55706	55706					0.08393449197183145
STVQIGWVKK	10	Unmodified	_STVQIGWVKK_					0	0	0			REV__ENSG00000138653|ENST00000264363|NDST4	REV__ENSG00000138653|ENST00000264363|NDST4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.3303833007812	2	573.337498	1144.66044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.975	1	44.059	43.559	44.559	0.083996								0	0	0	0.3367	1	9697	9697		20.415	2.2682	1		+		45777	15940	26374	26375	55707	55707					0.09389980294099587
STVQPRLGI	9	Unmodified	_STVQPRLGI_					0	0	0		SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|41|1|anti-sense	SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|41|1|anti-sense	SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|41|1|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.787641	969.56073	0.71879	0.00034918	1.1531	0.00056018	1.8719	0.00090936	485.78802885504894	50.715	0.27699	50.715	50.569	50.846	0					14	9	2	0	0	0	0.15219	1	11783	11783		30.637	3.7529	1	176720			45778	23386	26375	26376	55708	55708					0.07473162680128098
STVQPRLGI	9	Unmodified	_STVQPRLGI_					0	0	0		SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|41|1|anti-sense	SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|41|1|anti-sense	SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|41|1|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8003234863281	2	485.787641	969.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.724	1	50.77	50.27	51.27	0.045876								0	0	0	0.16757	1	11783	11783		30.637	0.41173	1				45779	23386	26375	26376	55709	55709					0.07473162680128098
STVQPRLGI	9	Unmodified	_STVQPRLGI_					0	0	0		SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|41|1|anti-sense	SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|41|1|anti-sense	SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|41|1|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002624511719	2	485.787641	969.56073	0.78383	0.00038077	1.2818	0.00062268	2.0656	0.0010035	485.7880933724163	50.767	0.37041	50.777	50.567	50.937	0.0095634					21	13	2	0	0	0	0.15219	1	11781	11781		30.637	3.7529	1	134210			45780	23386	26375	26376	55710	55710					0.07473162680128098
STVSADPVVK	10	Unmodified	_STVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.77728271484375	2	501.776939	1001.53933	0.28134	0.00014117	0.47435	0.00023802	0.75568	0.00037918	501.77714588105204	26.978	0.8598	26.978	26.701	27.561	0					79	29	4	0	0	0	3.3013E-05	1	4498	4498		136.39	76.318	1	1274500			45781	3938	26376	26377	55711	55711					0.038617328607642776
STVSADPVVK	10	Unmodified	_STVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7770690917969	2	501.776939	1001.53933	0.25556	0.00012823	0.41681	0.00020914	0.67237	0.00033738	501.77711840690523	26.959	0.90784	26.938	26.62	27.528	-0.021412					76	31	4	0	0	0	0.00068414	1	4491	4491		125.04	75.483	1	1507400			45782	3938	26376	26377	55712	55712					0.038617328607642776
STVSADPVVK	10	Unmodified	_STVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7770690917969	2	501.776939	1001.53933	0.38231	0.00019184	0.38764	0.00019451	0.76995	0.00038634	501.77706029730314	26.958	0.84618	26.946	26.681	27.527	-0.01156					74	29	4	0	0	0	3.3013E-05	1	4479	4479		136.39	73.819	1	1452700			45783	3938	26376	26377	55713	55713					0.038617328607642776
STVSQPNLK	9	Unmodified	_STVSQPNLK_					0	0	0		nc|ENSG00000108100|Q8ND76-3|CCNY;ENSG00000108100|ENST00000374704|CCNY;nc|ENSG00000108100|Q8ND76-2|CCNY	nc|ENSG00000108100|Q8ND76-3|CCNY	nc|ENSG00000108100|Q8ND76-3|CCNY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7580261230469	2	487.269281	972.52401	0.043385	2.114E-05	0.17332	8.4452E-05	0.2167	0.00010559	487.26957073909193	23.126	0.37444	23.126	22.904	23.278	0					22	12	2	0	0	0	0.24467	1	3319	3319		17.113	0.1706	1	212390			45784	2164	26377	26378	55714	55714					0.03664866063559202
STVSQPNLK	9	Unmodified	_STVSQPNLK_					0	0	0		nc|ENSG00000108100|Q8ND76-3|CCNY;ENSG00000108100|ENST00000374704|CCNY;nc|ENSG00000108100|Q8ND76-2|CCNY	nc|ENSG00000108100|Q8ND76-3|CCNY	nc|ENSG00000108100|Q8ND76-3|CCNY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7579345703125	2	487.269281	972.52401	0.28685	0.00013977	-4.0463	-0.0019716	-3.7594	-0.0018319	487.2671965578062	23.199	0.94715	23.154	22.925	23.872	-0.044867					51	33	2	0	0	0	0.11201	2	3400	3352;3400		36.506	13.77	1	252410			45785	2164	26377	26378	55715;55716	55716					0.03664866063559202
STVTIATEVHP	11	Unmodified	_STVTIATEVHP_					0	0	0		ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.32080078125	2	577.806228	1153.5979	0.50148	0.00028976	2.5372	0.001466	3.0387	0.0017558	577.8081525277321	83.62	0.31156	83.697	83.514	83.826	0.077095					17	12	2	0	0	0	0.32477	1	21822	21822		16.149	2.2431	1	109630			45786	8128	26378	26379	55717	55717					0.027247894352285584
STVVSSKEVNK	11	Unmodified	_STVVSSKEVNK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3248291015625	2	589.324785	1176.63502	0.12107	7.1352E-05	0.15792	9.3066E-05	0.27899	0.00016442	589.3245923650284	15.395	0.39201	15.395	15.232	15.624	0					26	12	3	0	0	0	0.42506	1	1033	1033		7.9454	4.9502	1	76836			45787	4292	26379	26380	55718	55718					0.05376460981005948
STWEGIQAGK	10	Unmodified	_STWEGIQAGK_					0	0	0		ENST00000530119.5_1_11:747481-760254:+|nuORF;ENST00000533796.1_1_11:755745-760254:+|nuORF;nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1	ENST00000530119.5_1_11:747481-760254:+|nuORF	ENST00000530119.5_1_11:747481-760254:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7957153320312	2	538.772188	1075.52982	-0.89099	-0.00048004	3.3705	0.0018159	2.4795	0.0013359	538.7722277839407	34.914	0.66436	34.989	34.713	35.377	0.075306					60	23	4	0	0	0	0.19779	1	6923	6923		53.317	40.274	1	322330			45788	6966	26380	26381	55719	55719					-0.0049203542478153395
STWFECWF	8	Unmodified	_STWFECWF_					0	0	0			REV__ADRB2|p.A271Pfs*5|1|0.19|ENSG00000169252|chr5:148827639-148827639|A/-|frameshift_variant	REV__ADRB2|p.A271Pfs*5|1|0.19|ENSG00000169252|chr5:148827639-148827639|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3108520507812	2	553.226028	1104.4375	0.43274	0.0002394	0.46855	0.00025921	0.90129	0.00049862	553.2262411722385	82.621	1.1091	82.694	82.215	83.324	0.073097					98	43	5	0	0	0	0.34092	1	21603	21603		13.508	4.7625	1	795810	+		45789	13087	26381	26382	55720	55720					-0.11053836762675928
STWLILHHK	9	Unmodified	_STWLILHHK_					0	0	0		nc|ENSG00000166347|P00167-2|CYB5A;ENST00000583418.1_1_18:71928104-71959110:-|nuORF;nc|ENSG00000166347|P00167-3|CYB5A;ENSG00000166347|ENST00000340533|CYB5A	nc|ENSG00000166347|P00167-2|CYB5A	nc|ENSG00000166347|P00167-2|CYB5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2689819335938	2	567.824558	1133.63456	0.95058	0.00053976	0.28983	0.00016457	1.2404	0.00070433	567.8246333801533	33.721	0.38794	33.788	33.624	34.012	0.06636					25	13	2	0	0	0	0.25323	1	6607	6607		10.074	3.3508	1	155060			45790	6065	26382	26383	55721	55721					0.07309130842440936
STWLILHHK	9	Unmodified	_STWLILHHK_					0	0	0		nc|ENSG00000166347|P00167-2|CYB5A;ENST00000583418.1_1_18:71928104-71959110:-|nuORF;nc|ENSG00000166347|P00167-3|CYB5A;ENSG00000166347|ENST00000340533|CYB5A	nc|ENSG00000166347|P00167-2|CYB5A	nc|ENSG00000166347|P00167-2|CYB5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2688598632812	2	567.824558	1133.63456	0.11126	6.3177E-05	0.99115	0.0005628	1.1024	0.00062597	567.8249485913138	33.799	0.522	33.866	33.549	34.071	0.066704					29	18	2	0	0	0	0.25202	1	6610	6610		10.824	4.6181	1	118440			45791	6065	26382	26383	55722	55722					0.07309130842440936
STWLSGSLH	9	Unmodified	_STWLSGSLH_					0	0	0		ENSG00000236981|ENST00000375024|OR10G9;ENSG00000234560|ENST00000641224|OR10G8	ENSG00000236981|ENST00000375024|OR10G9	ENSG00000236981|ENST00000375024|OR10G9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.77655029296875	2	494.248349	986.482145	-0.19596	-9.6852E-05	1.6946	0.00083756	1.4987	0.00074071	494.2491776786996	60.156	0.34856	60.251	60.047	60.395	0.095093					20	12	3	0	0	0	0.21137	1	14714	14714		24.674	0	1	257780			45792	8486	26383	26384	55723	55723					-0.011636896249456186
STWLTLVLG	9	Unmodified	_STWLTLVLG_					0	0	0		ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7767639160156	2	495.286943	988.559333	0.83521	0.00041367	-0.10828	-5.3628E-05	0.72693	0.00036004	495.28699431703336	60.643	0.29222	60.634	60.546	60.838	-0.0094566					14	10	2	0	0	0	0.14099	1	14829	14829		34.102	14.845	1	143740			45793	4178	26384	26385	55724	55724					0.06459528591381059
STWPHCKEF	9	Unmodified	_STWPHCKEF_					0	0	0			REV__ENST00000489304.5_1_20:44746991-44755859:+|nuORF	REV__ENST00000489304.5_1_20:44746991-44755859:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2792358398438	2	567.755484	1133.49641	0.59298	0.00033667	0.32788	0.00018615	0.92086	0.00052282	567.7555349676902	65.751	0.78844	65.84	65.491	66.279	0.088882					76	28	4	0	0	0	0.25202	1	16500	16500		10.824	10.824	1	745230	+		45794	14243	26385	26386	55725	55725					-0.06499360468319537
STWQRLPQLL	10	Unmodified	_STWQRLPQLL_					0	0	0		ENST00000566735.1_1_16:19125342-19127388:+|nuORF;ENSG00000205730|ENST00000381440|ITPRIPL2	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.5709533691406	3	414.571545	1240.69281	0.079107	3.2796E-05	-0.69161	-0.00028672	-0.61251	-0.00025393	414.57112083771045	33.412	1.0513	33.479	33.158	34.209	0.066704					90	37	3	0	0	0	0.31651	1	6467	6467		11.518	3.5725	1	1050300			45795	8300	26386	26387	55726	55726					0.08208767697101393
STWRGKKERF	10	Unmodified	_STWRGKKERF_					0	0	0			REV__chr5:1402319-1402922|182|11.07|0.0|15.18|-|0|None,SLC6A3|1	REV__chr5:1402319-1402922|182|11.07|0.0|15.18|-|0|None,SLC6A3|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.87738037109375	3	432.238678	1293.6942	0.59057	0.00025527	1.8659	0.00080649	2.4564	0.0010618	432.24027158821735	33.826	0.47325	33.892	33.676	34.149	0.06636					24	16	2	0	0	0	0.31929	1	6578	6578		7.0371	1.7402	1	219510	+		45796	13200	26387	26388	55727	55727					0.05910401785831709
STYALTLYK	9	Unmodified	_STYALTLYK_					0	0	0		ENST00000493876.2_1_2:114386183-114391835:+|nuORF;ENST00000465711.5_1_2:114386183-114394926:+|nuORF;ENST00000467600.5_1_2:114386183-114392789:+|nuORF;ENST00000464678.5_1_22:51208306-51220722:-|nuORF;nc|ENSG00000144134|Q9UNT1|RABL2B;nc|ENSG00000144134|Q9UBK7|RABL2A;ENSG00000144134|ENST00000683472|RABL2A;ENSG00000079974|ENST00000691320|RABL2B;nc|ENSG00000144134|Q9UNT1-3|RABL2B;nc|ENSG00000144134|Q9UBK7-3|RABL2A	ENST00000493876.2_1_2:114386183-114391835:+|nuORF	ENST00000493876.2_1_2:114386183-114391835:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.769287109375	2	530.289682	1058.56481	0.73157	0.00038794	-1.2559	-0.00066601	-0.52437	-0.00027807	530.7902922574395	47.712	0.2129	47.755	47.611	47.824	0.04332					10	7	2	0	0	0	0.1645	1	10837	10837		40.239	12.61	1	370030			45797	1146	26388	26389	55728	55728					0.037872073831977104
STYALTLYK	9	Unmodified	_STYALTLYK_					0	0	0		ENST00000493876.2_1_2:114386183-114391835:+|nuORF;ENST00000465711.5_1_2:114386183-114394926:+|nuORF;ENST00000467600.5_1_2:114386183-114392789:+|nuORF;ENST00000464678.5_1_22:51208306-51220722:-|nuORF;nc|ENSG00000144134|Q9UNT1|RABL2B;nc|ENSG00000144134|Q9UBK7|RABL2A;ENSG00000144134|ENST00000683472|RABL2A;ENSG00000079974|ENST00000691320|RABL2B;nc|ENSG00000144134|Q9UNT1-3|RABL2B;nc|ENSG00000144134|Q9UBK7-3|RABL2A	ENST00000493876.2_1_2:114386183-114391835:+|nuORF	ENST00000493876.2_1_2:114386183-114391835:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	530.289682	1058.56481	0.72008	0.00038185	-0.86179	-0.000457	-0.14171	-7.5145E-05	530.2894191425326	47.758	0.18987	47.805	47.646	47.836	0.04752	0.024885	9.6108E-05	NaN	40.239	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	604350			45798	1146	26388	26389							0.037872073831977104
STYDKVGKT	9	Unmodified	_STYDKVGKT_					0	0	0		nc|ENSG00000173175|O95622-2|ADCY5;ENSG00000173175|ENST00000462833|ADCY5	nc|ENSG00000173175|O95622-2|ADCY5	nc|ENSG00000173175|O95622-2|ADCY5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7615661621094	2	499.761289	997.508025	0.265	0.00013244	0.2691	0.00013449	0.5341	0.00026692	499.76101954844796	23.7	0.79985	23.628	23.285	24.085	-0.072559					41	27	2	0	0	0	0.26612	1	3527	3527		13.906	0	1	128250			45799	6699	26389	26390	55729	55729					0.00917159826678926
STYDKVGKT	9	Unmodified	_STYDKVGKT_					0	0	0		nc|ENSG00000173175|O95622-2|ADCY5;ENSG00000173175|ENST00000462833|ADCY5	nc|ENSG00000173175|O95622-2|ADCY5	nc|ENSG00000173175|O95622-2|ADCY5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.76123046875	2	499.761289	997.508025	0.41414	0.00020697	0.4205	0.00021015	0.83464	0.00041712	499.7609516727424	23.708	0.59927	23.669	23.42	24.02	-0.038927					34	20	2	0	0	0	0.26612	1	3523	3523		13.906	0	1	97429			45800	6699	26389	26390	55730	55730					0.00917159826678926
STYDLYTIPK	10	Unmodified	_STYDLYTIPK_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.8115234375	2	600.810979	1199.6074	0.44721	0.00026869	0.51823	0.00031136	0.96544	0.00058005	600.8111857846396	51.889	1.0935	51.889	51.456	52.55	0					90	37	4	0	0	0	2.2048E-05	3	12164	12117;12164;12217		143.21	113.37	1	2042000			45801	3034	26390	26391	55731;55732;55733	55732					0.015585577207502865
STYDLYTIPK	10	Unmodified	_STYDLYTIPK_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.8113403320312	2	600.810979	1199.6074	0.53043	0.00031869	0.35764	0.00021487	0.88806	0.00053356	600.8111417659676	51.826	0.77423	51.875	51.506	52.28	0.049007					79	25	4	0	0	0	2.7564E-05	4	12148	12080;12098;12148;12199		139.78	113.51	1	2187100			45802	3034	26390	26391	55734;55735;55736;55737	55736					0.015585577207502865
STYDLYTIPK	10	Unmodified	_STYDLYTIPK_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8112182617188	2	600.810979	1199.6074	0.16909	0.00010159	0.72677	0.00043665	0.89586	0.00053824	600.8112788158136	51.992	0.91916	51.991	51.55	52.469	-0.00081253					94	30	5	0	0	0	0.0012219	3	12155	12109;12155;12203		117.84	97.423	1	1912900			45803	3034	26390	26391	55738;55739;55740	55739					0.015585577207502865
STYEQVDLIGK	11	Unmodified	_STYEQVDLIGK_					0	0	0		nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.8245239257812	2	626.824618	1251.63468	0.12606	7.9017E-05	-0.1695	-0.00010625	-0.043445	-2.7233E-05	626.824615710169	46.206	0.57016	46.271	46.043	46.613	0.065048					59	20	4	0	0	0	0.0028803	1	10414	10414		84.738	60.937	1	1127400			45804	5998	26391	26392	55741	55741					0.018930412611325664
STYEQVDLIGK	11	Unmodified	_STYEQVDLIGK_					0	0	0		nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	626.824618	1251.63468	0.092479	5.7968E-05	-0.29276	-0.00018351	-0.20028	-0.00012554	626.8245029457057	46.362	0.56421	46.362	46.111	46.675	0	0.077842	-0.0002254	NaN	84.738	60	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	995260			45805	5998	26391	26392							0.018930412611325664
STYEQVDLIGK	11	Unmodified	_STYEQVDLIGK_					0	0	0		nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	626.824618	1251.63468	-0.12423	-7.7868E-05	0.10565	6.6224E-05	-0.018578	-1.1645E-05	626.8247516384785	46.159	0.45843	46.219	46.015	46.474	0.059834	-0.064662	0.00027406	NaN	84.738	52	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	972220			45806	5998	26391	26392							0.018930412611325664
STYFTGILQK	10	Unmodified	_STYFTGILQK_					0	0	0		ENSG00000139970|ENST00000267484|RTN1	ENSG00000139970|ENST00000267484|RTN1	ENSG00000139970|ENST00000267484|RTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.31494140625	2	579.313689	1156.61282	0.42096	0.00024387	0.43678	0.00025303	0.85774	0.0004969	579.3137896396503	53.503	0.6558	53.503	53.228	53.884	0					37	24	2	0	0	0	0.0014947	1	12662	12662		114.19	81.401	1	586350			45807	4274	26392	26393	55742	55742					0.040782813032365084
STYFTGILQK	10	Unmodified	_STYFTGILQK_					0	0	0		ENSG00000139970|ENST00000267484|RTN1	ENSG00000139970|ENST00000267484|RTN1	ENSG00000139970|ENST00000267484|RTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.3151245117188	2	579.313689	1156.61282	0.24465	0.00014173	0.67112	0.00038879	0.91577	0.00053052	579.3139635161169	53.488	0.57164	53.544	53.273	53.845	0.056255					34	21	2	0	0	0	0.002913	1	12648	12648		103.82	71.038	1	552210			45808	4274	26392	26393	55743	55743					0.040782813032365084
STYFTGILQK	10	Unmodified	_STYFTGILQK_					0	0	0		ENSG00000139970|ENST00000267484|RTN1	ENSG00000139970|ENST00000267484|RTN1	ENSG00000139970|ENST00000267484|RTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.31494140625	2	579.313689	1156.61282	0.38038	0.00022036	0.71184	0.00041238	1.0922	0.00063274	579.31408344416	53.682	0.50219	53.673	53.482	53.984	-0.0096054					31	18	2	0	0	0	1.5674E-06	1	12702	12702		155.95	116	1	483970			45809	4274	26392	26393	55744	55744					0.040782813032365084
STYGTHIHEK	10	Unmodified	_STYGTHIHEK_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.7889404296875	2	586.78837	1171.56219	-0.044645	-2.6197E-05	0.57535	0.00033761	0.5307	0.00031141	586.7887405105778	14.259	0.2588	14.155	14.049	14.308	-0.10466					18	8	3	0	0	0	0.17571	1	676	676		35.612	25.462	1	148810			45810	2862	26393	26394	55745	55745					-0.0167324802175699
STYGTHIHEK	10	Unmodified	_STYGTHIHEK_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	586.78837	1171.56219	0.013584	7.9708E-06	0.17249	0.00010122	0.18608	0.00010919	586.7885706873783	14.235	0.2821	14.169	14.007	14.289	-0.066068	0.021939	-0.0001838	NaN	35.612	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109990			45811	2862	26393	26394							-0.0167324802175699
STYGVTKGK	9	Unmodified	_STYGVTKGK_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2;HNRNPUL2|p.L598Afs*2|1|0.43|ENSG00000214753|chr11:62717177-62717178|AA/-|frameshift_variant;HNRNPUL2|p.C602Mfs*6|1|0.16|ENSG00000214753|chr11:62717166-62717167|-/T|frameshift_variant	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2961730957031	2	470.758549	939.502546	-0.25883	-0.00012185	0.20904	9.8406E-05	-0.049797	-2.3442E-05	470.7589657313048	13.497	0.53637	13.497	13.336	13.872	0					49	18	4	0	0	0	0.24471	1	460	460		17.113	3.605	1	623480			45812	8390	26394	26395	55746	55746					0.03037481034857592
STYGVTKGK	9	Unmodified	_STYGVTKGK_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2;HNRNPUL2|p.L598Afs*2|1|0.43|ENSG00000214753|chr11:62717177-62717178|AA/-|frameshift_variant;HNRNPUL2|p.C602Mfs*6|1|0.16|ENSG00000214753|chr11:62717166-62717167|-/T|frameshift_variant	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2959289550781	2	470.758549	939.502546	-0.21717	-0.00010224	0.323	0.00015205	0.10582	4.9817E-05	470.7588756078517	13.576	0.66283	13.477	13.276	13.938	-0.099291					43	23	3	0	0	0	0.2524	1	486	486		11.495	2.9014	1	636610			45813	8390	26394	26395	55747	55747					0.03037481034857592
STYGVTKGK	9	Unmodified	_STYGVTKGK_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2;HNRNPUL2|p.L598Afs*2|1|0.43|ENSG00000214753|chr11:62717177-62717178|AA/-|frameshift_variant;HNRNPUL2|p.C602Mfs*6|1|0.16|ENSG00000214753|chr11:62717166-62717167|-/T|frameshift_variant	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2961120605469	2	470.758549	939.502546	-0.15663	-7.3734E-05	0.055447	2.6102E-05	-0.10118	-4.7632E-05	470.75886384837156	13.578	0.5566	13.51	13.359	13.916	-0.067496					54	19	4	0	0	0	0.24787	1	482	482		15.248	7.3383	1	519600			45814	8390	26394	26395	55748	55748					0.03037481034857592
STYIILVLK	9	Unmodified	_STYIILVLK_					0	0	0		ENST00000186436.9_1_2:98475819-98543905:-|nuORF	ENST00000186436.9_1_2:98475819-98543905:-|nuORF	ENST00000186436.9_1_2:98475819-98543905:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3336791992188	2	525.333893	1048.65323	0.29674	0.00015589	-0.42267	-0.00022204	-0.12593	-6.6154E-05	525.3335188377004	64.964	0.73343	64.964	64.755	65.488	0					64	26	4	0	0	0	0.0037772	1	16189	16189		96.111	74.364	1	765150			45815	8793	26395	26396	55749	55749					0.1308524769365249
STYIILVLK	9	Unmodified	_STYIILVLK_					0	0	0		ENST00000186436.9_1_2:98475819-98543905:-|nuORF	ENST00000186436.9_1_2:98475819-98543905:-|nuORF	ENST00000186436.9_1_2:98475819-98543905:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.77685546875	2	525.333893	1048.65323	0.38042	0.00019985	-0.40723	-0.00021393	-0.026812	-1.4085E-05	525.333511003736	64.9	0.58289	64.989	64.769	65.352	0.088882					55	21	3	0	0	0	0.059216	1	16167	16167		69.105	53.258	1	877030			45816	8793	26395	26396	55750	55750					0.1308524769365249
STYIILVLK	9	Unmodified	_STYIILVLK_					0	0	0		ENST00000186436.9_1_2:98475819-98543905:-|nuORF	ENST00000186436.9_1_2:98475819-98543905:-|nuORF	ENST00000186436.9_1_2:98475819-98543905:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7769165039062	2	525.333893	1048.65323	0.24608	0.00012927	-0.23263	-0.00012221	0.013452	7.0666E-06	525.3335843667163	64.988	0.53934	64.976	64.78	65.319	-0.011337					49	19	3	0	0	0	0.08298	1	16190	16190		60.074	49.25	1	630850			45817	8793	26395	26396	55751	55751					0.1308524769365249
STYKVLFL	8	Unmodified	_STYKVLFL_					0	0	0			REV__ENST00000478484.5_1_2:27851925-27854072:+|nuORF	REV__ENST00000478484.5_1_2:27851925-27854072:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.784036	969.553519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.854	1	78.854	78.354	79.354	0								0	0	0	0.35014	1	20421	20421		14.582	1.0738	1		+		45818	21454	26396	26397	55752	55752					0.06752430079700389
STYLNNPYVRK	11	Unmodified	_STYLNNPYVRK_					0	0	0		nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENST00000480961.1_1_20:44522693-44523773:+|nuORF	nc|ENSG00000064601|P10619-2|CTSA	nc|ENSG00000064601|P10619-2|CTSA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.57647705078125	3	452.241976	1353.7041	-0.31159	-0.00014091	0.24358	0.00011016	-0.068005	-3.0755E-05	452.2420117916898	34.431	0.62258	34.431	34.074	34.697	0					53	21	3	0	0	0	0.37764	1	6763	6763		14.171	9.7646	1	638470			45819	789	26397	26398	55753	55753					0.04139545000543876
STYLNNPYVRK	11	Unmodified	_STYLNNPYVRK_					0	0	0		nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENST00000480961.1_1_20:44522693-44523773:+|nuORF	nc|ENSG00000064601|P10619-2|CTSA	nc|ENSG00000064601|P10619-2|CTSA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.5762023925781	3	452.241976	1353.7041	-0.12774	-5.7768E-05	0.30352	0.00013726	0.17578	7.9495E-05	452.2419245820148	34.203	0.99959	34.269	33.676	34.676	0.06636					103	35	4	0	0	0	0.35732	2	6724	6724;6780		16.838	10.97	1	479540			45820	789	26397	26398	55754;55755	55754					0.04139545000543876
STYLNNPYVRK	11	Unmodified	_STYLNNPYVRK_					0	0	0		nc|ENSG00000064601|P10619-2|CTSA;ENSG00000064601|ENST00000646241|CTSA;ENST00000480961.1_1_20:44522693-44523773:+|nuORF	nc|ENSG00000064601|P10619-2|CTSA	nc|ENSG00000064601|P10619-2|CTSA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.241943359375	3	452.241976	1353.7041	-0.022414	-1.0137E-05	0.11549	5.2229E-05	0.093076	4.2093E-05	452.24197666587804	34.183	0.97952	34.25	33.739	34.718	0.0667					94	34	4	0	0	0	0.33432	1	6680	6680		19.144	9.9002	1	614520			45821	789	26397	26398	55756	55756					0.04139545000543876
STYNLQILTR	10	Unmodified	_STYNLQILTR_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.8353271484375	2	604.83532	1207.65609	0.60204	0.00036414	-0.19735	-0.00011936	0.40469	0.00024477	604.8350070552527	53.325	0.6019	53.325	53.121	53.723	0					49	22	3	0	0	0	1.895E-13	1	12589	12589		180.74	116.78	1	1175900			45822	1420	26398	26399	55757	55757					0.060564710805238064
STYNLQILTR	10	Unmodified	_STYNLQILTR_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.8353271484375	2	604.83532	1207.65609	0.59937	0.00036252	-0.4034	-0.00024399	0.19596	0.00011853	604.8349481717146	53.316	0.548	53.372	53.141	53.689	0.056255					44	20	3	0	0	0	1.8476E-08	2	12564	12564;12616		157.49	101.99	1	1380700			45823	1420	26398	26399	55758;55759	55758					0.060564710805238064
STYNLQILTR	10	Unmodified	_STYNLQILTR_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.8355712890625	2	604.83532	1207.65609	0.43219	0.0002614	-0.041214	-2.4928E-05	0.39097	0.00023647	604.8351422188346	53.521	0.56831	53.511	53.247	53.815	-0.0096054					50	21	3	0	0	0	1.895E-13	1	12644	12644		180.74	107.77	1	1207000			45824	1420	26398	26399	55760	55760					0.060564710805238064
STYPEIHGF	9	Unmodified	_STYPEIHGF_					0	0	0		ENST00000469573.1_1_2:165365242-165383622:-|nuORF;ENST00000488342.5_1_2:165365032-165477819:-|nuORF;nc|ENSG00000115290|Q14449-2|GRB14;ENSG00000115290|ENST00000263915|GRB14	ENST00000469573.1_1_2:165365242-165383622:-|nuORF	ENST00000469573.1_1_2:165365242-165383622:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.302978515625	2	525.748182	1049.48181	0.54538	0.00028673	0.65041	0.00034195	1.1958	0.00062868	525.7484579112938	57.029	0.60339	57.01	56.838	57.441	-0.019081					37	21	2	0	0	0	0.25417	1	13854	13854		2.0598	0	1	290770			45825	2630	26399	26400	55761	55761					-0.040951093448029496
STYPPSGPTYR	11	Unmodified	_STYPPSGPTYR_					0	0	0		nc|ENSG00000104763|Q13510-2|ASAH1;ENSG00000104763|ENST00000637790|ASAH1	nc|ENSG00000104763|Q13510-2|ASAH1	nc|ENSG00000104763|Q13510-2|ASAH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.2965087890625	2	613.296027	1224.5775	0.18768	0.0001151	1.293	0.00079297	1.4806	0.00090807	613.295746349046	31.724	1.7409	31.724	30.979	32.72	0					88	62	2	0	0	0	0.37165	1	5881	5881		14.957	4.1577	1	357360			45826	1913	26400	26401	55762	55762					-0.02580381224561279
STYRWLLVRFL	11	Unmodified	_STYRWLLVRFL_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	3	485.281995	1452.82415	0.20362	9.8812E-05	-0.050563	-2.4538E-05	0.15305	7.4274E-05	485.28183657586965	52.077	0.81888	52.077	51.619	52.438	0					59	29	3	0	0	0	0.3333	1	12279	12279		1.3296	0.11481	1	273170	+		45827	23013	26401	26402	55763	55763					0.11585578064978108
STYSHTYVEL	10	Unmodified	_STYSHTYVEL_					0	0	0			REV__nc|ENSG00000089123|Q9H6P5-2|TASP1	REV__nc|ENSG00000089123|Q9H6P5-2|TASP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.2818603515625	2	600.282586	1198.55062	0.47702	0.00028635	-1.0683	-0.00064125	-0.59123	-0.00035491	600.2816373381852	57.709	0.72057	57.709	57.495	58.216	0					53	25	3	0	0	0	0.34325	1	13949	13949		13.906	1.6654	1	946720	+		45828	21414	26402	26403	55764	55764					-0.04071489835723696
STYSHTYVEL	10	Unmodified	_STYSHTYVEL_					0	0	0			REV__nc|ENSG00000089123|Q9H6P5-2|TASP1	REV__nc|ENSG00000089123|Q9H6P5-2|TASP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.2821044921875	2	600.282586	1198.55062	0.53021	0.00031827	-1.3124	-0.00078781	-0.78219	-0.00046954	600.2814288383039	57.504	0.62651	57.589	57.318	57.945	0.085621					52	22	3	0	0	0	0.30958	1	13894	13894		19.257	0	1	976180	+		45829	21414	26402	26403	55765	55765					-0.04071489835723696
STYSHTYVEL	10	Unmodified	_STYSHTYVEL_					0	0	0			REV__nc|ENSG00000089123|Q9H6P5-2|TASP1	REV__nc|ENSG00000089123|Q9H6P5-2|TASP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.2821044921875	2	600.282586	1198.55062	0.32869	0.00019731	-0.61876	-0.00037143	-0.29007	-0.00017412	600.2820100312745	57.82	0.69276	57.803	57.555	58.247	-0.0172					52	25	3	0	0	0	0.34325	1	14006	14006		13.906	0.86358	1	936700	+		45830	21414	26402	26403	55766	55766					-0.04071489835723696
STYTPENLLNK	11	Unmodified	_STYTPENLLNK_					0	0	0		ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.329833984375	2	640.330067	1278.64558	0.077938	4.9906E-05	-0.13649	-8.7402E-05	-0.058557	-3.7496E-05	640.3298719011332	46.339	0.59192	46.339	46.111	46.703	0					65	21	4	0	0	0	7.4678E-26	3	10460	10414;10460;10513		221.57	120.86	1	3534000			45831	6291	26403	26404	55767;55768;55769	55768					0.017404436354354402
STYTPENLLNK	11	Unmodified	_STYTPENLLNK_					0	0	0		ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.3299560546875	2	640.330067	1278.64558	0.32053	0.00020524	-0.29195	-0.00018694	0.02858	1.8301E-05	640.3297155687656	46.166	0.60113	46.225	45.984	46.585	0.059837					75	21	5	0	0	0	7.4678E-26	2	10393	10346;10393		221.57	120.86	1	3518800			45832	6291	26403	26404	55770;55771	55771					0.017404436354354402
STYTPENLLNK	11	Unmodified	_STYTPENLLNK_					0	0	0		ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	ENSG00000168672|ENST00000304916|LRATD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.330322265625	2	640.330067	1278.64558	0.45431	0.00029091	-0.51982	-0.00033286	-0.065508	-4.1947E-05	640.3296155043884	46.195	0.63655	46.26	45.976	46.613	0.065048					70	22	4	0	0	0	5.0817E-13	3	10346	10346;10395;10470		173.14	95.078	1	3066000			45833	6291	26403	26404	55772;55773;55774	55772					0.017404436354354402
STYYGSFVTR	10	Unmodified	_STYYGSFVTR_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.7855224609375	2	590.785296	1179.55604	0.4145	0.00024488	0.034334	2.0284E-05	0.44884	0.00026517	590.7853958794848	44.162	1.7633	44.162	43.63	45.393	0					251	64	6	0	0	0	3.2406E-15	5	9719	9719;9764;9813;9863;9909		202.97	136.51	1	29403000			45834	4780	26404	26405	55775;55776;55777;55778;55779	55775					-0.02655766253269576
STYYGSFVTR	10	Unmodified	_STYYGSFVTR_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.7857666015625	2	590.785296	1179.55604	0.39662	0.00023432	0.10764	6.3594E-05	0.50426	0.00029791	590.7854587390458	43.832	1.7557	43.91	43.515	45.27	0.077518					239	64	5	0	0	0	3.2406E-15	6	9650	9605;9650;9693;9743;9793;9843		202.97	136.51	1	30070000			45835	4780	26404	26405	55780;55781;55782;55783;55784;55785	55781					-0.02655766253269576
STYYGSFVTR	10	Unmodified	_STYYGSFVTR_					0	0	0		ENSG00000147677|ENST00000521861|EIF3H;ENST00000518034.5_1_8:117671049-117768048:-|nuORF;ENST00000517974.1_1_8:117671049-117768052:-|nuORF	ENSG00000147677|ENST00000521861|EIF3H	ENSG00000147677|ENST00000521861|EIF3H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.7857666015625	2	590.785296	1179.55604	0.39898	0.00023571	0.089768	5.3033E-05	0.48874	0.00028874	590.7854697089281	43.826	1.9842	43.91	43.522	45.506	0.083996					251	73	5	0	0	0	1.4514E-20	6	9642	9597;9642;9689;9733;9783;9854		216.42	149.96	1	34609000			45836	4780	26404	26405	55786;55787;55788;55789;55790;55791	55787					-0.02655766253269576
SVAAAAEVLE	10	Unmodified	_SVAAAAEVLE_					0	0	0			REV__ENSG00000147174|ENST00000373696|GCNA	REV__ENSG00000147174|ENST00000373696|GCNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7502136230469	2	480.25584	958.497126	0.094421	4.5346E-05	-1.8548	-0.00089079	-1.7604	-0.00084545	480.2526517584129	22.145	0.14468	22.145	22.045	22.189	0					6	4	2	0	0	0	0.34325	1	3067	3067		13.906	1.3745	1	22857	+		45837	16376	26405	26406	55792	55792					0.016217574523807343
SVAAERRRMRL	11	Unmodified	_SVAAERRRMRL_					0	0	0		ENST00000498228.1_1_1:55014277-55063089:+|nuORF;ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11	ENST00000498228.1_1_1:55014277-55063089:+|nuORF	ENST00000498228.1_1_1:55014277-55063089:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.777587890625	3	448.926217	1343.75682	0.1616	7.2547E-05	-2.4975	-0.0011212	-2.3359	-0.0010487	448.9245964314731	32.913	0.41282	32.968	32.758	33.171	0.055313					22	14	2	0	0	0	0.33056	1	6336	6336		8.7518	3.2285	1	164670			45838	5564	26406	26407	55793	55793					0.09869224582371317
SVAAPITVR	9	Unmodified	_SVAAPITVR_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.27642822265625	2	457.276909	912.539266	-0.56777	-0.00025963	0.12591	5.7577E-05	-0.44186	-0.00020205	457.2769017639802	35.254	0.57493	35.254	35	35.575	0					49	20	3	0	0	0	0.1558	1	7024	7024		41.956	27.117	1	1092900			45839	6433	26407	26408	55794	55794					0.07949777651424483
SVAAPITVR	9	Unmodified	_SVAAPITVR_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.27642822265625	2	457.276909	912.539266	-0.64429	-0.00029462	0.076179	3.4835E-05	-0.56811	-0.00025978	457.27686658169847	35.162	0.57084	35.237	34.963	35.533	0.075306					56	20	4	0	0	0	0.086462	2	7025	6977;7025		40.239	17.722	1	1182600			45840	6433	26407	26408	55795;55796	55796					0.07949777651424483
SVAAPITVR	9	Unmodified	_SVAAPITVR_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.27667236328125	2	457.276909	912.539266	-0.75746	-0.00034637	0.29203	0.00013354	-0.46543	-0.00021283	457.276996340072	35.143	0.58062	35.22	34.947	35.528	0.077377					49	20	3	0	0	0	0.18936	1	6968	6968		32.786	17.947	1	1243300			45841	6433	26407	26408	55797	55797					0.07949777651424483
SVAAPLGKLI	10	Unmodified	_SVAAPLGKLI_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.80267333984375	2	484.810585	967.606617	0.071033	3.4437E-05	2.0211	0.00097987	2.0922	0.0010143	484.81107081447874	33.234	0.27416	33.234	33.091	33.365	0					13	9	2	0	0	0	0.24105	2	6414	6414;6463		27.629	5.8822	1	120460	+		45842	18977	26408	26409	55798;55799	55798					0.12151807862392161
SVAAVKGLGI	10	Unmodified	_SVAAVKGLGI_					0	0	0		nc|ENSG00000172548|Q0D2K0-2|NIPAL4;ENSG00000172548|ENST00000311946|NIPAL4	nc|ENSG00000172548|Q0D2K0-2|NIPAL4	nc|ENSG00000172548|Q0D2K0-2|NIPAL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.27667236328125	2	457.78711	913.559667	-0.80602	-0.00036898	-1.1789	-0.0005397	-1.985	-0.00090868	457.78696815159617	34.842	0.38559	34.919	34.755	35.141	0.077377					24	13	3	0	0	0	0.30079	1	6968	6968		20.454	13.164	1	150060			45843	6646	26409	26410	55800	55800					0.09942948311231703
SVADLAESIMK	11	Oxidation (M)	_SVADLAESIM(Oxidation (M))K_		SVADLAESIM(1)K		SVADLAESIM(210)K	0	0	1		ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-4|LDHA;ENST00000437325.2_1_1:235902019-235902286:+|nuORF;ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENSG00000134333|ENST00000422447|LDHA	ENSG00000134333|ENST00000422447|LDHA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.3001708984375	2	590.299921	1178.58529	0.50213	0.00029641	0.10704	6.3187E-05	0.60918	0.0003596	590.2998684824577	49.552	1.3861	49.552	48.995	50.381	0					157	50	5	0	0	0	3.1073000000000003E-25	2	11403	11403;11453		205.73	145.72	1	5904400			45844	3775	26410	26411	55801;55802	55801		470			0.0031400998066146713
SVADLAESIMK	11	Oxidation (M)	_SVADLAESIM(Oxidation (M))K_		SVADLAESIM(1)K		SVADLAESIM(200)K	0	0	1		ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-4|LDHA;ENST00000437325.2_1_1:235902019-235902286:+|nuORF;ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENSG00000134333|ENST00000422447|LDHA	ENSG00000134333|ENST00000422447|LDHA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.3001708984375	2	590.299921	1178.58529	0.35495	0.00020953	0.18529	0.00010938	0.54025	0.00031891	590.2999419824507	49.561	1.2524	49.606	49.238	50.491	0.044891					144	46	5	0	0	0	1.0195000000000001E-19	2	11411	11411;11457		202.97	145.72	1	7584200			45845	3775	26410	26411	55803;55804	55803		470			0.0031400998066146713
SVADLAESIMK	11	Oxidation (M)	_SVADLAESIM(Oxidation (M))K_		SVADLAESIM(1)K		SVADLAESIM(210)K	0	0	1		ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-4|LDHA;ENST00000437325.2_1_1:235902019-235902286:+|nuORF;ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENSG00000134333|ENST00000422447|LDHA	ENSG00000134333|ENST00000422447|LDHA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.3002319335938	2	590.299921	1178.58529	0.30572	0.00018046	0.24521	0.00014474	0.55092	0.00032521	590.2999849960961	49.539	1.2774	49.571	49.121	50.398	0.032043					154	46	5	0	0	0	3.1073000000000003E-25	2	11392	11392;11442		205.73	140.26	1	6211300			45846	3775	26410	26411	55805;55806	55805		470			0.0031400998066146713
SVAEHPLSR	9	Unmodified	_SVAEHPLSR_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2668151855469	2	498.267073	994.519593	0.36005	0.0001794	-0.01813	-9.0335E-06	0.34192	0.00017037	498.266743327437	17.285	0.58716	17.285	16.981	17.568	0					66	20	5	0	0	0	0.25112	1	1558	1558		16.149	3.1066	1	187230			45847	4432	26411	26412	55807	55807					0.02211401640670374
SVAEHPLSR	9	Unmodified	_SVAEHPLSR_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2671813964844	2	498.267073	994.519593	0.18397	9.1668E-05	-0.23113	-0.00011516	-0.047153	-2.3495E-05	498.26683518516546	17.527	0.6945	17.41	16.937	17.631	-0.11739					44	24	2	0	0	0	0.23216	1	1661	1661		22.658	9.6156	1	177720			45848	4432	26411	26412	55808	55808					0.02211401640670374
SVAEHPLSR	9	Unmodified	_SVAEHPLSR_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.26702880859375	2	498.267073	994.519593	0.35294	0.00017586	-0.4964	-0.00024734	-0.14346	-7.1482E-05	498.26676817725235	17.429	0.61857	17.368	16.999	17.618	-0.060429					50	21	3	0	0	0	0.19905	1	1676	1676		23.79	14.407	1	174560			45849	4432	26411	26412	55809	55809					0.02211401640670374
SVAELEELSG	10	Unmodified	_SVAELEELSG_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.255859375	2	517.256037	1032.49752	0.68913	0.00035645	-0.45044	-0.00023299	0.23869	0.00012346	517.2555147538036	47.85	1.0345	47.897	47.539	48.573	0.047523					75	38	3	0	0	0	0.38515	1	10997	10997		6.2058	0.44535	1	3350800			45850	7846	26412	26413	55810	55810					-0.017428676184181313
SVAELRSQK	9	Unmodified	_SVAELRSQK_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7666931152344	2	509.288005	1016.56146	0.067013	3.4129E-05	-0.49279	-0.00025097	-0.42577	-0.00021684	509.28709823443495	15.692	0.35176	15.583	15.464	15.816	-0.10981					23	11	3	0	0	0	0.24993	1	1102	1102		8.7454	0	1	74362			45851	3547	26413	26414	55811	55811					0.05383957329195255
SVAFYILGPEE	11	Unmodified	_SVAFYILGPEE_					0	0	0		ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.8106689453125	2	612.810979	1223.6074	0.7024	0.00043044	-0.82159	-0.00050348	-0.11919	-7.3042E-05	612.8102660110335	37.405	0.43571	37.405	37.152	37.587	0					43	15	3	0	0	0	0.23983	1	7712	7712		27.629	0	1	4465500			45852	541	26414	26415	55812	55812					0.004545577207863971
SVAFYILGPEE	11	Unmodified	_SVAFYILGPEE_					0	0	0		ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.8107299804688	2	612.810979	1223.6074	0.32461	0.00019893	-0.51393	-0.00031494	-0.18932	-0.00011602	612.8105200600896	37.313	0.51623	37.401	37.062	37.578	0.087406					62	18	4	0	0	0	0.23983	2	7663	7663;7706		27.629	0	1	3728100			45853	541	26414	26415	55813;55814	55813					0.004545577207863971
SVAFYILGPEE	11	Unmodified	_SVAFYILGPEE_					0	0	0		ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.810791015625	2	612.810979	1223.6074	0.32636	0.0002	-0.57132	-0.00035011	-0.24495	-0.00015011	612.8105022149917	37.697	0.92926	37.788	37.581	38.511	0.090881					97	33	5	0	0	0	0.23983	2	7758	7758;7803		27.629	0	1	4517100			45854	541	26414	26415	55815;55816	55815					0.004545577207863971
SVAFYILGPEE	11	Unmodified	_SVAFYILGPEE_					0	0	0		ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.810546875	2	612.810979	1223.6074	0.36774	0.00022535	-0.58677	-0.00035958	-0.21903	-0.00013423	612.810527632841	37.244	0.4615	37.337	37.086	37.548	0.093018					57	16	5	0	0	0	0.23983	2	7607	7607;7657		27.629	0	1	3924700			45855	541	26414	26415	55817;55818	55817					0.004545577207863971
SVAFYILGPEE	11	Unmodified	_SVAFYILGPEE_					0	0	0		ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	ENSG00000027644|ENST00000368195|INSRR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.8107299804688	2	612.810979	1223.6074	0.23477	0.00014387	-0.40176	-0.0002462	-0.16699	-0.00010233	612.8105604182134	37.656	0.9882	37.754	37.529	38.517	0.09753					99	35	4	0	0	0	0.23983	2	7743	7743;7786		27.629	0	1	4136600			45856	541	26414	26415	55819;55820	55819					0.004545577207863971
SVAGLLPRR	9	Unmodified	_SVAGLLPRR_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.8035583496094	2	484.803626	967.592698	0.19882	9.6387E-05	-1.3077	-0.00063398	-1.1089	-0.00053759	484.8029065510805	33.104	0.72204	33.16	32.891	33.613	0.055309					57	25	3	0	0	0	0.006189	1	6372	6372		85.272	33.004	1	388920			45857	5066	26415	26416	55821	55821					0.10760575153938134
SVAGLLPRR	9	Unmodified	_SVAGLLPRR_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.8028564453125	2	484.803626	967.592698	0.18057	8.7541E-05	-1.2258	-0.00059426	-1.0452	-0.00050672	484.8028990196263	33.171	0.60607	33.225	32.931	33.537	0.054371					49	21	3	0	0	0	0.040595	1	6394	6394		74.929	33.089	1	373590			45858	5066	26415	26416	55822	55822					0.10760575153938134
SVAGLLPRR	9	Unmodified	_SVAGLLPRR_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	484.803626	967.592698	0.1326	6.4286E-05	-1.2648	-0.00061319	-1.1322	-0.0005489	484.802907880804	33.235	0.78104	33.235	32.865	33.646	0	0.028363	-3.5242E-06	NaN	85.272	57	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377180			45859	5066	26415	26416							0.10760575153938134
SVAHGRKA	8	Unmodified	_SVAHGRKA_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2379150390625	2	413.238119	824.461684	0.30416	0.00012569	-0.11551	-4.7733E-05	0.18865	7.7956E-05	413.2379925185633	66.279	2.0512	66.363	65.699	67.75	0.083832					129	73	2	0	0	0	0.45942	1	16623	16623		2.5775	2.5775	1	565640			45860	5916	26416	26417	55823	55823					0.04243184505889985
SVAHGRKA	8	Unmodified	_SVAHGRKA_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2380065917969	2	413.238119	824.461684	0.3056	0.00012628	-0.52198	-0.0002157	-0.21638	-8.9418E-05	413.23776678259657	68.037	2.13	68.115	67.546	69.676	0.078049					115	76	3	0	0	0	0.45942	2	17023	17023;17082		2.5775	0	1	565240			45861	5916	26416	26417	55824;55825	55824					0.04243184505889985
SVAHGRKA	8	Unmodified	_SVAHGRKA_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2378845214844	2	413.238119	824.461684	0.15901	6.5707E-05	-0.014559	-6.0164E-06	0.14445	5.9691E-05	413.2381052916761	66.464	1.5716	66.45	65.824	67.396	-0.013588					96	55	3	0	0	0	0.45942	1	16646	16646		2.5775	0	1	540660			45862	5916	26416	26417	55826	55826					0.04243184505889985
SVAHSPPEK	9	Unmodified	_SVAHSPPEK_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.2486267089844	2	476.248349	950.482145	-0.075604	-3.6006E-05	0.33907	0.00016148	0.26347	0.00012548	476.24840836315997	13.062	0.46017	12.962	12.757	13.217	-0.099291					30	15	3	0	0	0	0.27726	1	312	312		12.241	2.1667	1	62873			45863	6155	26417	26418	55827	55827					0.004923103750456903
SVAHSPPEK	9	Unmodified	_SVAHSPPEK_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	476.248349	950.482145	-0.19503	-9.2884E-05	0.21414	0.00010198	0.019102	9.0972E-06	476.248396045685	12.984	0.72751	12.984	12.526	13.254	0	0.017748	-7.4294E-05	NaN	12.241	36	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66939			45864	6155	26417	26418							0.004923103750456903
SVAHSPPEK	9	Unmodified	_SVAHSPPEK_					0	0	0		nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	nc|nan|Q6ZRI6-2|C15orf39	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	476.248349	950.482145	-0.1679	-7.996E-05	0.3501	0.00016673	0.1822	8.6773E-05	476.2485191035738	13.02	0.83926	12.953	12.52	13.359	-0.067496	-0.013563	5.5209E-05	NaN	12.241	39	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69117			45865	6155	26417	26418							0.004923103750456903
SVAIGPFVL	9	Unmodified	_SVAIGPFVL_					0	0	0			REV__ENST00000593450.1_1_19:22646763-22647404:+|nuORF	REV__ENST00000593450.1_1_19:22646763-22647404:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.77081298828125	2	451.770929	901.527304	0.23651	0.00010685	-0.18617	-8.4106E-05	0.050345	2.2744E-05	451.77070435273976	76.841	0.77984	76.841	76.448	77.228	0					69	28	3	0	0	0	0.15464	1	19769	19769		38.151	2.107	1	677610	+		45866	22582	26418	26419	55828	55828					0.07260160908231228
SVAIGPFVL	9	Unmodified	_SVAIGPFVL_					0	0	0			REV__ENST00000593450.1_1_19:22646763-22647404:+|nuORF	REV__ENST00000593450.1_1_19:22646763-22647404:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.77996826171875	2	451.770929	901.527304	0.062354	2.817E-05	0.00063609	2.8737E-07	0.06299	2.8457E-05	451.77079543277523	76.787	0.69746	76.84	76.451	77.148	0.053421					51	24	3	0	0	0	0.1669	2	19733	19733;19746		28.487	0	1	552180	+		45867	22582	26418	26419	55829;55830	55829					0.07260160908231228
SVAIGPFVL	9	Unmodified	_SVAIGPFVL_					0	0	0			REV__ENST00000593450.1_1_19:22646763-22647404:+|nuORF	REV__ENST00000593450.1_1_19:22646763-22647404:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7706604003906	2	451.770929	901.527304	0.41397	0.00018702	-0.41138	-0.00018585	0.0025958	1.1727E-06	451.77060741180077	76.812	0.78487	76.78	76.452	77.237	-0.031387					66	28	3	0	0	0	0.11517	4	19767	19751;19767;19807;19840		36.044	1.738	1	675780	+		45868	22582	26418	26419	55831;55832;55833;55834	55832					0.07260160908231228
SVAKERARLQL	11	Unmodified	_SVAKERARLQL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2578430175781	3	424.257849	1269.75172	-0.12242	-5.1936E-05	0.35742	0.00015164	0.23501	9.9703E-05	424.2580802670226	26.877	0.55806	26.877	26.614	27.172	0					39	19	3	0	0	0	0.2912	1	4493	4493		23.016	10.16	1	176740			45869	5487	26419	26420	55835	55835					0.12763243991435047
SVAKERARLQL	11	Unmodified	_SVAKERARLQL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.2580261230469	3	424.257849	1269.75172	0.051322	2.1774E-05	0.30785	0.00013061	0.35917	0.00015238	424.25793095569185	26.889	0.45159	26.877	26.681	27.132	-0.011562					40	15	3	0	0	0	0.36722	1	4504	4504		15.538	5.2232	1	160980			45870	5487	26419	26420	55836	55836					0.12763243991435047
SVAKKPYSP	9	Unmodified	_SVAKKPYSP_					0	0	0		ENST00000526582.1_1_11:90848103-90848802:-|nuORF	ENST00000526582.1_1_11:90848103-90848802:-|nuORF	ENST00000526582.1_1_11:90848103-90848802:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2926025390625	2	488.776742	975.538931	0.38296	0.00018718	-0.55632	-0.00027191	-0.17336	-8.4735E-05	488.77622106426605	30.3	0.49937	30.3	29.999	30.499	0					33	17	3	0	0	0	0.19747	1	5523	5523		24.021	3.5669	1	201640			45871	11556	26420	26421	55837	55837					0.05018357931567152
SVAKKPYSP	9	Unmodified	_SVAKKPYSP_					0	0	0		ENST00000526582.1_1_11:90848103-90848802:-|nuORF	ENST00000526582.1_1_11:90848103-90848802:-|nuORF	ENST00000526582.1_1_11:90848103-90848802:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2923278808594	2	488.776742	975.538931	0.3733	0.00018246	-0.51641	-0.00025241	-0.14312	-6.9951E-05	488.77622880419005	30.272	0.56047	30.3	30.02	30.58	0.027946					39	19	3	0	0	0	0.19747	1	5501	5501		24.021	0	1	248110			45872	11556	26420	26421	55838	55838					0.05018357931567152
SVAKKPYSP	9	Unmodified	_SVAKKPYSP_					0	0	0		ENST00000526582.1_1_11:90848103-90848802:-|nuORF	ENST00000526582.1_1_11:90848103-90848802:-|nuORF	ENST00000526582.1_1_11:90848103-90848802:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2925109863281	2	488.776742	975.538931	0.0066377	3.2443E-06	-0.21997	-0.00010751	-0.21333	-0.00010427	488.7763318042541	30.261	0.53582	30.288	30.019	30.555	0.027157					38	18	3	0	0	0	0.19747	1	5516	5516		24.021	3.5669	1	254230			45873	11556	26420	26421	55839	55839					0.05018357931567152
SVAKNFFTK	9	Unmodified	_SVAKNFFTK_					0	0	0		REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant;REPS2|p.D555Gfs*14|1|0.67|ENSG00000169891|chrX:17133904-17133905|-/A|frameshift_variant;nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2901000976562	2	521.290017	1040.56548	0.57134	0.00029783	-0.13841	-7.215E-05	0.43293	0.00022568	521.2897533263892	29.905	0.81508	29.905	29.633	30.448	0					77	28	4	0	0	0	0.0018978	1	5433	5433		111.31	55.806	1	849290			45874	6396	26421	26422	55840	55840					0.0468204682290434
SVAKNFFTK	9	Unmodified	_SVAKNFFTK_					0	0	0		REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant;REPS2|p.D555Gfs*14|1|0.67|ENSG00000169891|chrX:17133904-17133905|-/A|frameshift_variant;nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.290283203125	2	521.290017	1040.56548	0.44224	0.00023054	0.04813	2.509E-05	0.49037	0.00025563	521.289819923574	29.882	0.68435	29.894	29.654	30.338	0.012266					58	23	3	0	0	0	0.0030911	1	5416	5416		101.54	46.041	1	750080			45875	6396	26421	26422	55841	55841					0.0468204682290434
SVAKNFFTK	9	Unmodified	_SVAKNFFTK_					0	0	0		REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant;REPS2|p.D555Gfs*14|1|0.67|ENSG00000169891|chrX:17133904-17133905|-/A|frameshift_variant;nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	REPS2|p.D409Rfs*4|1|0.14|ENSG00000169891|chrX:17068413-17068414|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2901000976562	2	521.290017	1040.56548	0.12341	6.4333E-05	0.19579	0.00010206	0.3192	0.0001664	521.2899067420627	29.897	0.86328	29.911	29.653	30.516	0.013475					61	29	3	0	0	0	0.0046407	1	5426	5426		101.54	37.583	1	853190			45876	6396	26421	26422	55842	55842					0.0468204682290434
SVAKTILKR	9	Unmodified	_SVAKTILKR_					0	0	0		ENSG00000114978|ENST00000396049|MOB1A;ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENSG00000114978|ENST00000396049|MOB1A	ENSG00000114978|ENST00000396049|MOB1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3347473144531	2	508.334759	1014.65496	0.1326	6.7406E-05	-0.0095687	-4.8641E-06	0.12303	6.2542E-05	508.33464827782603	18.782	0.70625	18.782	18.505	19.211	0					64	24	4	0	0	0	0.0058682	2	2042	1994;2042		85.764	49.258	1	598110			45877	2598	26422	26423	55843;55844	55844					0.14822301502283608
SVAKTILKR	9	Unmodified	_SVAKTILKR_					0	0	0		ENSG00000114978|ENST00000396049|MOB1A;ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENSG00000114978|ENST00000396049|MOB1A	ENSG00000114978|ENST00000396049|MOB1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.3347473144531	2	508.334759	1014.65496	0.1004	5.1038E-05	0.073845	3.7538E-05	0.17425	8.8576E-05	508.3346968614866	18.927	0.808	18.81	18.501	19.309	-0.11739					81	28	4	0	0	0	0.0083763	2	2080	2033;2080		81.915	49.13	1	535310			45878	2598	26422	26423	55845;55846	55846					0.14822301502283608
SVAKTILKR	9	Unmodified	_SVAKTILKR_					0	0	0		ENSG00000114978|ENST00000396049|MOB1A;ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENSG00000114978|ENST00000396049|MOB1A	ENSG00000114978|ENST00000396049|MOB1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.33477783203125	2	508.334759	1014.65496	-0.005511	-2.8014E-06	0.061186	3.1103E-05	0.055675	2.8302E-05	508.3347079693709	18.859	0.85084	18.8	18.57	19.421	-0.058172					71	29	4	0	0	0	0.0058682	2	2068	2024;2068		85.764	49.258	1	517150			45879	2598	26422	26423	55847;55848	55848					0.14822301502283608
SVALFAFLL	9	Unmodified	_SVALFAFLL_					0	0	0			REV__nc|ENSG00000073464|P51793-2|CLCN4	REV__nc|ENSG00000073464|P51793-2|CLCN4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.8033447265625	2	490.794404	979.574254	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.649	1	22.649	22.149	23.149	0								0	0	0	0.23091	1	3209	3209		12.532	0.89125	1		+		45880	13775	26423	26424	55849	55849					0.08365020459370953
SVALPGRK	8	Unmodified	_SVALPGRK_					0	0	0		ENST00000586411.1_1_17:43628025-43635826:-|nuORF	ENST00000586411.1_1_17:43628025-43635826:-|nuORF	ENST00000586411.1_1_17:43628025-43635826:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.5977478027344	2	414.25852	826.502486	0.29255	0.00012119	-1.4988	-0.00062089	-1.2063	-0.0004997	414.25635354575513	95.885	0.34173	95.882	95.694	96.036	-0.0038223					37	29	2	0	0	0	0.34131	1	25589	25589		12.532	0	1	42848			45881	12117	26424	26425	55850	55850					0.08229525825515793
SVALRQRQRR	10	Unmodified	_SVALRQRQRR_					0	0	0			REV__ENSG00000177575|ENST00000432237|CD163	REV__ENSG00000177575|ENST00000432237|CD163	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	635.3831787109375	2	635.384168	1268.75378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.49	1	101.48	100.98	101.98	-0.0054703								0	0	0	0.38126	1	27093	27093		1.6526	0.17072	1		+		45882	17998	26425	26426	55851	55851					0.1301571751987467
SVAPEPVPSL	10	Unmodified	_SVAPEPVPSL_					0	0	0			REV__ENST00000602808.1_1_6:89980180-90024845:-|nuORF	REV__ENST00000602808.1_1_6:89980180-90024845:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.27435302734375	2	498.274032	994.533512	0.44932	0.00022388	0.085817	4.276E-05	0.53514	0.00026664	498.274048701784	43.542	0.45613	43.626	43.41	43.866	0.083996					41	16	3	0	0	0	0.2811	1	9567	9567		22.736	2.1553	1	654390	+		45883	22645	26426	26427	55852	55852					0.036026343490902946
SVAPGPSVV	9	Unmodified	_SVAPGPSVV_					0	0	0			REV__ENST00000345317.6_1_7:26894494-26904350:-|nuORF	REV__ENST00000345317.6_1_7:26894494-26904350:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.1796875	2	406.729261	811.443968	-0.39074	-0.00015893	0.56209	0.00022862	0.17135	6.9693E-05	406.72943533094093	35.504	0.72722	35.59	35.204	35.931	0.08625					34	25	2	0	0	0	0.24913	1	7151	7151		7.9102	0	1	190610	+		45884	20145	26427	26428	55853	55853					0.03070424460383947
SVAPIPQPP	9	Unmodified	_SVAPIPQPP_					0	0	0		ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119;ENST00000578434.1_1_17:26879057-26879575:-|nuORF	ENSG00000109103|ENST00000335765|UNC119	ENSG00000109103|ENST00000335765|UNC119	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2583312988281	2	453.258185	904.501818	0.089847	4.0724E-05	0.14861	6.736E-05	0.23846	0.00010808	453.258158986831	26.553	1.2099	26.515	25.931	27.141	-0.038671					67	42	2	0	0	0	0.30623	1	4513	4513		7.9102	0.62092	1	466490			45885	2235	26428	26429	55854	55854					0.04574686385797122
SVAPQTRVL	9	Unmodified	_SVAPQTRVL_					0	0	0		ENSG00000105278|ENST00000262961|ZFR2;ZFR2|p.Q729Rfs*10|1|0.38|ENSG00000105278|chr19:3813876-3813876|T/-|frameshift_variant	ENSG00000105278|ENST00000262961|ZFR2	ENSG00000105278|ENST00000262961|ZFR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002014160156	2	485.787641	969.56073	0.069111	3.3573E-05	0.50194	0.00024384	0.57106	0.00027741	485.78768467165855	46.549	0.80932	46.549	46.003	46.813	0					65	29	3	0	0	0	0.18803	2	10381	10381;10426		25.399	3.6527	1	605120			45886	1961	26429	26430	55855;55856	55855					0.07473162680150836
SVAPSPAVDK	10	Unmodified	_SVAPSPAVDK_					0	0	0		KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;KDM5C|p.H988Tfs*18|1|0.35|ENSG00000126012|chrX:53196705-53196705|G/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.763916015625	2	485.763832	969.513111	0.068743	3.3393E-05	0.11305	5.4917E-05	0.1818	8.831E-05	485.76381236834834	23.555	0.74908	23.555	23.224	23.973	0					58	25	3	0	0	0	0.17571	1	3467	3467		35.612	9.3441	1	610290			45887	3253	26430	26431	55857	55857					0.027134636892810704
SVAPSPAVDK	10	Unmodified	_SVAPSPAVDK_					0	0	0		KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;KDM5C|p.H988Tfs*18|1|0.35|ENSG00000126012|chrX:53196705-53196705|G/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.763916015625	2	485.763832	969.513111	0.13454	6.5354E-05	-0.017138	-8.3251E-06	0.1174	5.7029E-05	485.76374763365794	23.617	0.79148	23.544	23.206	23.997	-0.072559					65	27	3	0	0	0	0.15113	1	3496	3496		38.615	5.8291	1	605680			45888	3253	26430	26431	55858	55858					0.027134636892810704
SVAPSPAVDK	10	Unmodified	_SVAPSPAVDK_					0	0	0		KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant;KDM5C|p.D1414Efs*54|1|0.32|ENSG00000126012|chrX:53193502-53193512|TGTGGTTCTCA/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;KDM5C|p.H988Tfs*18|1|0.35|ENSG00000126012|chrX:53196705-53196705|G/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	KDM5C|p.R1396Lfs*17|1|0.18|ENSG00000126012|chrX:53193560-53193567|GGGGGCCC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7637939453125	2	485.763832	969.513111	0.34118	0.00016573	-0.25461	-0.00012368	0.086576	4.2056E-05	485.7636400542098	23.634	0.76588	23.595	23.283	24.049	-0.038927					45	26	2	0	0	0	0.20497	2	3491	3491;3539		32.037	5.7693	1	597080			45889	3253	26430	26431	55859;55860	55859					0.027134636892810704
SVAQATLRT	9	Unmodified	_SVAQATLRT_					0	0	0			REV__nc|ENSG00000185261|Q8IV33|KIAA0825	REV__nc|ENSG00000185261|Q8IV33|KIAA0825	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7594909667969	2	473.769448	945.524344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.913	1	19.797	19.297	20.297	-0.11592								0	0	0	0.25197	1	2380	2380		5.7319	0	1		+		45890	18367	26431	26432	55861	55861					0.049402857834252245
SVAQLLLSK	9	Unmodified	_SVAQLLLSK_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;ENST00000541335.1_1_12:431581-432275:-|nuORF	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.80010986328125	2	479.800217	957.585882	0.33182	0.00015921	-0.34504	-0.00016555	-0.01321	-6.3384E-06	479.79997722960746	51.322	0.77831	51.322	51.006	51.784	0					49	28	2	0	0	0	0.000109	2	12000	11951;12000		139.38	61.318	1	2573000			45891	1003	26432	26433	55862;55863	55863					0.10539217482710228
SVAQLLLSK	9	Unmodified	_SVAQLLLSK_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;ENST00000541335.1_1_12:431581-432275:-|nuORF	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.80035400390625	2	479.800217	957.585882	0.27618	0.00013251	-0.63081	-0.00030266	-0.35463	-0.00017015	479.79997955503745	51.274	0.82772	51.321	50.985	51.813	0.046574					77	30	4	0	0	0	8.7117E-05	2	11952	11952;11998		142.92	51.834	1	2264600			45892	1003	26432	26433	55864;55865	55864					0.10539217482710228
SVAQLLLSK	9	Unmodified	_SVAQLLLSK_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;ENST00000541335.1_1_12:431581-432275:-|nuORF	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.80047607421875	2	479.800217	957.585882	0.34115	0.00016368	-1.2245	-0.00058752	-0.88337	-0.00042384	479.79961536952055	51.385	0.83831	51.394	50.991	51.829	0.0095673					83	31	4	0	0	0	0.00025984	1	11955	11955		132.22	50.305	1	2276900			45893	1003	26432	26433	55866	55866					0.10539217482710228
SVAQPAKRI	9	Unmodified	_SVAQPAKRI_					0	0	0			REV__ENSG00000118985|ENST00000237853|ELL2	REV__ENSG00000118985|ENST00000237853|ELL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.9289245605469	2	485.295633	968.576714	0.10017	4.8611E-05	0.017497	8.4913E-06	0.11767	5.7103E-05	485.29549522106026	23.907	0.63662	23.907	23.448	24.085	0					36	21	2	0	0	0	0.25938	1	3588	3588		4.3292	0	1	92979	+		45894	15025	26433	26434	55867	55867					0.09116868917044485
SVAQVVLSR	9	Unmodified	_SVAQVVLSR_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3;ENST00000493581.1_1_9:33443725-33447528:-|nuORF;ENST00000463983.5_1_9:33443205-33447528:-|nuORF	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.78765869140625	2	479.787641	957.56073	-0.2041	-9.7924E-05	0.13235	6.3499E-05	-0.07175	-3.4425E-05	479.78778987959095	38.882	1.257	38.882	38.546	39.803	0					129	45	5	0	0	0	4.9382E-11	3	8152	8109;8152;8194		187.14	109.08	1	7966900			45895	12813	26434	26435	55868;55869;55870	55869					0.08025162680144149
SVAQVVLSR	9	Unmodified	_SVAQVVLSR_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3;ENST00000493581.1_1_9:33443725-33447528:-|nuORF;ENST00000463983.5_1_9:33443205-33447528:-|nuORF	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7876281738281	2	479.787641	957.56073	0.18766	9.0037E-05	-0.26344	-0.00012639	-0.075775	-3.6356E-05	479.7876006876338	38.788	1.3729	38.88	38.544	39.917	0.09267					139	49	5	0	0	0	4.5677E-07	3	8137	8089;8137;8186		162.31	89.346	1	8769900			45896	12813	26434	26435	55871;55872;55873	55872					0.08025162680144149
SVAQVVLSR	9	Unmodified	_SVAQVVLSR_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3;ENST00000493581.1_1_9:33443725-33447528:-|nuORF;ENST00000463983.5_1_9:33443205-33447528:-|nuORF	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7876281738281	2	479.787641	957.56073	0.43072	0.00020666	-0.50244	-0.00024106	-0.071712	-3.4407E-05	479.7874723847563	38.756	1.2732	38.855	38.544	39.817	0.099407					132	45	5	0	0	0	1.4498E-07	3	8121	8072;8121;8168		174.48	96.422	1	8796800			45897	12813	26434	26435	55874;55875;55876	55875					0.08025162680144149
SVAREHLPS	9	Unmodified	_SVAREHLPS_					0	0	0		nc|ENSG00000149488|Q8TDI7-4|TMC2	nc|ENSG00000149488|Q8TDI7-4|TMC2	nc|ENSG00000149488|Q8TDI7-4|TMC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.26666259765625	2	498.267073	994.519593	0.35294	0.00017586	-0.4964	-0.00024734	-0.14346	-7.1482E-05	498.26676817725235	17.429	0.61857	17.368	16.999	17.618	-0.060429					50	21	3	0	0	0	0.31763	1	1571	1571		6.2058	1.8765	1	174560			45898	12754	26435	26436	55877	55877					0.022114016406590054
SVARFPSL	8	Unmodified	_SVARFPSL_					0	0	0			REV__ENST00000551538.5_1_14:105961883-105962582:+|nuORF	REV__ENST00000551538.5_1_14:105961883-105962582:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.7504577636719	2	438.750527	875.486502	0.18429	8.0857E-05	-0.21142	-9.276E-05	-0.027131	-1.1904E-05	438.75037782067375	49.195	0.96558	49.195	48.827	49.793	0					56	34	2	0	0	0	0.077335	1	11309	11309		65.235	13.605	1	669010	+		45899	22209	26436	26437	55878	55878					0.04377819588614784
SVARFPSL	8	Unmodified	_SVARFPSL_					0	0	0			REV__ENST00000551538.5_1_14:105961883-105962582:+|nuORF	REV__ENST00000551538.5_1_14:105961883-105962582:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	438.750527	875.486502	0.043334	1.9013E-05	-0.18582	-8.1529E-05	-0.14249	-6.2516E-05	438.7504168421231	49.258	0.87059	49.303	48.878	49.749	0.044891	0.078796	-3.3316E-05	NaN	65.235	58	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	745870	+		45900	22209	26436	26437							0.04377819588614784
SVARFPSL	8	Unmodified	_SVARFPSL_					0	0	0			REV__ENST00000551538.5_1_14:105961883-105962582:+|nuORF	REV__ENST00000551538.5_1_14:105961883-105962582:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	438.750527	875.486502	-0.071637	-3.1431E-05	-0.010787	-4.7329E-06	-0.082424	-3.6164E-05	438.75046867477835	49.142	0.8273	49.174	48.828	49.655	0.032043	-0.050148	0.00012028	NaN	65.235	50	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	753340	+		45901	22209	26436	26437							0.04377819588614784
SVARRWFDEPI	11	Unmodified	_SVARRWFDEPI_					0	0	0			REV__ENST00000229214.8_1_12:75902094-75905340:-|nuORF	REV__ENST00000229214.8_1_12:75902094-75905340:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7581787109375	3	459.242088	1374.70443	0.14013	6.4352E-05	3.7407	0.0017179	3.8808	0.0017822	459.2427300343411	23.281	0.68939	23.237	22.925	23.614	-0.044867					54	24	4	0	0	0	0.33263	1	3368	3368		3.8459	1.4111	1	95153	+		45902	19456	26437	26438	55879	55879					0.03206964720402539
SVASATSVATK	11	Unmodified	_SVASATSVATK_					0	0	0		ENSG00000065154|ENST00000368845|OAT;ENST00000476917.5_1_10:126095965-126100767:-|nuORF;OAT|p.L70Gfs*3|1|0.15|ENSG00000065154|chr10:124408955-124408958|TAAG/-|frameshift_variant	ENSG00000065154|ENST00000368845|OAT	ENSG00000065154|ENST00000368845|OAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.28021240234375	2	511.279846	1020.54514	0.12161	6.2178E-05	0.9171	0.00046889	1.0387	0.00053107	511.2800601013896	21.998	0.31598	21.949	21.774	22.09	-0.049377					15	11	2	0	0	0	0.38187	1	3031	3031		13.615	2.7909	1	44921			45903	807	26438	26439	55880	55880					0.0356883137242221
SVASISLTK	9	Unmodified	_SVASISLTK_					0	0	0		ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.2687072753906	2	453.26875	904.522947	-0.35301	-0.00016001	0.30961	0.00014034	-0.043403	-1.9673E-05	453.2688156431723	35.314	0.79657	35.314	35.033	35.83	0					83	28	5	0	0	0	0.0008224	2	7038	7038;7085		125.04	31.872	1	2513900			45904	9204	26439	26440	55881;55882	55881					0.06686651694667489
SVASISLTK	9	Unmodified	_SVASISLTK_					0	0	0		ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.26849365234375	2	453.26875	904.522947	-0.35691	-0.00016177	0.21047	9.5401E-05	-0.14643	-6.6373E-05	453.26877304501215	35.222	1.1736	35.297	34.99	36.164	0.075306					86	42	4	0	0	0	0.0008224	2	7010	7010;7062		125.04	34.332	1	2766800			45905	9204	26439	26440	55883;55884	55883					0.06686651694667489
SVASISLTK	9	Unmodified	_SVASISLTK_					0	0	0		ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.2686462402344	2	453.26875	904.522947	-0.60663	-0.00027497	0.6089	0.00027599	0.0022634	1.0259E-06	453.268959747857	35.2	0.71606	35.277	35.005	35.721	0.077377					74	25	4	0	0	0	0.00054549	1	7029	7029		128.57	35.407	1	2564500			45906	9204	26439	26440	55885	55885					0.06686651694667489
SVASPFTSK	9	Unmodified	_SVASPFTSK_					0	0	0		ENSG00000127249|ENST00000342695|ATP13A4;ENSG00000187527|ENST00000342358|ATP13A5;nc|ENSG00000133657|Q9H7F0-2|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	ENSG00000127249|ENST00000342695|ATP13A4;nc|ENSG00000133657|Q9H7F0-2|ATP13A3	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.2452392578125	2	462.245275	922.475997	-0.11677	-5.3974E-05	-0.046146	-2.1331E-05	-0.16291	-7.5305E-05	462.24524704795544	31.088	1.0198	31.088	30.674	31.694	0					108	36	4	0	0	0	4.216E-07	3	5774	5730;5774;5816		163.69	94.582	1	5155300			45907	3310;3721	26440	26441	55886;55887;55888	55887					0.011657921435244134
SVASPFTSK	9	Unmodified	_SVASPFTSK_					0	0	0		ENSG00000127249|ENST00000342695|ATP13A4;ENSG00000187527|ENST00000342358|ATP13A5;nc|ENSG00000133657|Q9H7F0-2|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	ENSG00000127249|ENST00000342695|ATP13A4;nc|ENSG00000133657|Q9H7F0-2|ATP13A3	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.2452697753906	2	462.245275	922.475997	-0.16972	-7.8453E-05	0.070938	3.2791E-05	-0.098783	-4.5662E-05	462.2452853486402	31.097	1.1448	31.124	30.693	31.838	0.027946					107	40	4	0	0	0	3.4202E-05	3	5782	5734;5782;5823		151.48	83.399	1	5804300			45908	3310;3721	26440	26441	55889;55890;55891	55890					0.011657921435244134
SVASPFTSK	9	Unmodified	_SVASPFTSK_					0	0	0		ENSG00000127249|ENST00000342695|ATP13A4;ENSG00000187527|ENST00000342358|ATP13A5;nc|ENSG00000133657|Q9H7F0-2|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	ENSG00000127249|ENST00000342695|ATP13A4;nc|ENSG00000133657|Q9H7F0-2|ATP13A3	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.2452087402344	2	462.245275	922.475997	0.092362	4.2694E-05	-0.17096	-7.9025E-05	-0.078598	-3.6331E-05	462.2451803134229	31.04	1.1984	31.067	30.704	31.902	0.027157					118	43	4	0	0	0	0.00010651	3	5751	5703;5751;5791		139.78	75.821	1	5976100			45909	3310;3721	26440	26441	55892;55893;55894	55893					0.011657921435244134
SVASSRSSVLK	11	Unmodified	_SVASSRSSVLK_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8190307617188	2	560.81967	1119.62479	0.14049	7.8791E-05	-0.63087	-0.0003538	-0.49038	-0.00027501	560.8191774154053	18.436	0.31527	18.436	18.299	18.614	0					18	10	2	0	0	0	0.46969	1	1946	1946		2.086	0.24177	1	49237			45910	1623	26441	26442	55895	55895					0.06975898046425755
SVASSRSSVLK	11	Unmodified	_SVASSRSSVLK_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.81967	1119.62479	0.14049	7.8791E-05	-0.63087	-0.0003538	-0.49038	-0.00027501	560.8191774154053	18.436	0.31527	18.436	18.299	18.614	0	-0.062092	0.00010639	NaN	2.086	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49237			45911	1623	26441	26442							0.06975898046425755
SVASSRSSVLK	11	Unmodified	_SVASSRSSVLK_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.81967	1119.62479	0.16363	9.177E-05	-0.72155	-0.00040466	-0.55792	-0.00031289	560.8187268844747	18.618	0.28883	18.501	18.325	18.614	-0.11739	0.0028597	4.6828E-06	NaN	2.086	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35118			45912	1623	26441	26442							0.06975898046425755
SVASSRSSVLK	11	Unmodified	_SVASSRSSVLK_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	560.81967	1119.62479	-0.10945	-6.1383E-05	-0.8341	-0.00046778	-0.94355	-0.00052916	560.8187320291116	18.615	0.30834	18.557	18.372	18.681	-0.058174	0.059233	-0.00012156	NaN	2.086	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53741			45913	1623	26441	26442							0.06975898046425755
SVATALGLAV	10	Unmodified	_SVATALGLAV_					0	0	0			REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.8846740722656	2	451.271293	900.528032	0.03433	1.5492E-05	0.59793	0.00026983	0.63226	0.00028532	451.271433597081	41.089	0.54054	41.185	40.857	41.397	0.096626					38	19	3	0	0	0	0.26638	1	8832	8832		24.021	1.2843	1	416750	+		45914	19137	26442	26443	55896	55896					0.07378955557271638
SVATVAAILQH	11	Unmodified	_SVATVAAILQH_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2379760742188	2	555.319306	1108.62406	0.34276	0.00019034	-0.21932	-0.00012179	0.12344	6.8548E-05	555.8203698554523	55.328	0.40743	55.308	55.129	55.536	-0.019081					21	14	2	0	0	0	0.01254	1	13203	13203		80.676	50.835	1	441160			45915	7362	26443	26444	55897	55897					0.07409103397367289
SVATVAAILQH	11	Unmodified	_SVATVAAILQH_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	555.319306	1108.62406	0.37672	0.0002092	-0.29995	-0.00016657	0.076769	4.2631E-05	555.3190098539262	55.231	0.39173	55.231	55.008	55.4	0	-0.032304	-0.00023213	NaN	80.676	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476610			45916	7362	26443	26444							0.07409103397367289
SVATVAAILQH	11	Unmodified	_SVATVAAILQH_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	555.319306	1108.62406	0.54225	0.00030112	0.16082	8.9309E-05	0.70308	0.00039043	555.3195763163809	55.18	0.5627	55.251	55.14	55.703	0.070889	-0.012725	0.00027962	NaN	80.676	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340730			45917	7362	26443	26444							0.07409103397367289
SVATVKNLT	9	Unmodified	_SVATVKNLT_					0	0	0			REV__ENST00000491775.5_1_13:111806017-111861644:+|nuORF	REV__ENST00000491775.5_1_13:111806017-111861644:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7741394042969	2	466.7742	931.533846	-0.15194	-7.0922E-05	0.03128	1.4601E-05	-0.12066	-5.6322E-05	466.77418643869515	17.282	0.55205	17.164	16.937	17.489	-0.11739					33	19	2	0	0	0	0.29638	1	1624	1624		9.3831	0.63772	1	111880	+		45918	21619	26444	26445	55898	55898					0.06534054068947626
SVATVVYLR	9	Unmodified	_SVATVVYLR_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.29803466796875	2	504.297842	1006.58113	0.51433	0.00025938	0.28236	0.00014239	0.79669	0.00040177	504.29794763771173	45.365	0.71051	45.365	45.121	45.832	0					51	25	3	0	0	0	0.00045155	1	10145	10145		129.77	71.094	1	535730			45919	3628	26445	26446	55899	55899					0.07810333339944009
SVATVVYLR	9	Unmodified	_SVATVVYLR_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	504.297842	1006.58113	0.55682	0.0002808	0.056764	2.8626E-05	0.61358	0.00030943	504.29785323425943	45.295	0.6183	45.355	45.084	45.703	0.059837	0.010229	-7.2372E-05	NaN	129.77	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	492900			45920	3628	26445	26446							0.07810333339944009
SVATVVYLR	9	Unmodified	_SVATVVYLR_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	504.297842	1006.58113	0.42458	0.00021411	0.066677	3.3625E-05	0.49125	0.00024774	504.2979246162082	45.25	0.61133	45.315	45.091	45.703	0.065048	-0.029725	-6.2374E-05	NaN	129.77	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	683020			45921	3628	26445	26446							0.07810333339944009
SVAYVIGKF	9	Unmodified	_SVAYVIGKF_					0	0	0			REV__nc|ENSG00000077279|O43602-2|DCX	REV__nc|ENSG00000077279|O43602-2|DCX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2978210449219	2	492.28166	982.548768	0.22022	0.00010841	-0.37489	-0.00018455	-0.15467	-7.6139E-05	492.2814631629814	53.568	0.38865	53.624	53.535	53.923	0.056255					19	14	2	0	0	0	0.19839	1	12704	12704		21.747	1.293	1	181140	+		45922	13842	26446	26447	55900	55900					0.05679545936948216
SVAYVIGKF	9	Unmodified	_SVAYVIGKF_					0	0	0			REV__nc|ENSG00000077279|O43602-2|DCX	REV__nc|ENSG00000077279|O43602-2|DCX	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.297607421875	2	492.28166	982.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.85	1	53.84	53.34	54.34	-0.0096054								0	0	0	0.17683	1	12740	12740		28.487	1.6032	1		+		45923	13842	26446	26447	55901	55901					0.05679545936948216
SVCGRAFSRK	10	Unmodified	_SVCGRAFSRK_					0	0	0		nc|ENSG00000161551|Q9BSK1-2|ZNF577;ENSG00000161551|ENST00000638348|ZNF577	nc|ENSG00000161551|Q9BSK1-2|ZNF577	nc|ENSG00000161551|Q9BSK1-2|ZNF577	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.796630859375	2	555.795475	1109.5764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.76	1	114.76	114.26	115.26	0								0	0	0	0.38189	1	29762	29762		1.1933	0.12188	1				45924	5519	26447	26448	55902	55902					0.02599125925530643
SVCGRAFSRK	10	Unmodified	_SVCGRAFSRK_					0	0	0		nc|ENSG00000161551|Q9BSK1-2|ZNF577;ENSG00000161551|ENST00000638348|ZNF577	nc|ENSG00000161551|Q9BSK1-2|ZNF577	nc|ENSG00000161551|Q9BSK1-2|ZNF577	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.796630859375	2	555.795475	1109.5764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.33	1	115.33	114.83	115.83	0								0	0	0	0.38189	1	29892	29892		1.1933	0.12188	1				45925	5519	26447	26448	55903	55903					0.02599125925530643
SVCGRAFSRK	10	Unmodified	_SVCGRAFSRK_					0	0	0		nc|ENSG00000161551|Q9BSK1-2|ZNF577;ENSG00000161551|ENST00000638348|ZNF577	nc|ENSG00000161551|Q9BSK1-2|ZNF577	nc|ENSG00000161551|Q9BSK1-2|ZNF577	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7960815429688	2	555.795475	1109.5764	0.10129	5.6295E-05	1.5739	0.00087475	1.6752	0.00093104	555.7963078492771	119.39	0.055649	119.36	119.33	119.39	-0.024353					9	6	2	0	0	0	0.41242	1	30823	30823		1.1933	0.39971	1	11489			45926	5519	26447	26448	55904	55904					0.02599125925530643
SVCGRAFSRK	10	Unmodified	_SVCGRAFSRK_					0	0	0		nc|ENSG00000161551|Q9BSK1-2|ZNF577;ENSG00000161551|ENST00000638348|ZNF577	nc|ENSG00000161551|Q9BSK1-2|ZNF577	nc|ENSG00000161551|Q9BSK1-2|ZNF577	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.796630859375	2	555.795475	1109.5764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.35	1	117.38	116.88	117.88	0.023476								0	0	0	0.37807	1	30421	30421		2.9952	0	1				45927	5519	26447	26448	55905	55905					0.02599125925530643
SVCLKRVRGPL	11	Unmodified	_SVCLKRVRGPL_					0	0	0			REV__ENST00000464178.1_1_1:38148756-38155336:-|nuORF	REV__ENST00000464178.1_1_1:38148756-38155336:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9046630859375	3	409.916658	1226.72815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.547	1	36.629	36.129	37.129	0.082355								0	0	0	0.3674	1	7436	7436		4.4062	0.28952	1		+		45928	21261	26448	26449	55906	55906					0.12385106953229297
SVCPLNAK	8	Unmodified	_SVCPLNAK_					0	0	0		nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4;ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-4|TMTC4	nc|ENSG00000125247|Q5T4D3-2|TMTC4	nc|ENSG00000125247|Q5T4D3-2|TMTC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.90301513671875	2	416.223288	830.432024	-0.012568	-5.2309E-06	-3.1272	-0.0013016	-3.1398	-0.0013069	416.22209499210345	20.355	0.89355	20.355	19.849	20.742	0					56	32	3	0	0	0	0.34247	1	2368	2368		8.5933	0	1	197180			45929	3194	26449	26450	55907	55907					0.010024844455301718
SVCQARSL	8	Unmodified	_SVCQARSL_					0	0	0		ENST00000409645.5_1_2:135206583-135206760:+|nuORF	ENST00000409645.5_1_2:135206583-135206760:+|nuORF	ENST00000409645.5_1_2:135206583-135206760:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.21331787109375	2	432.22382	862.433086	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.704	1	52.704	52.204	53.204	-0.00080872								0	0	0	0.32762	1	12385	12385		24.674	0	1				45930	10253	26450	26451	55908	55908					-0.003633011855527002
SVDEESYKTLK	11	Unmodified	_SVDEESYKTLK_					0	0	0		ENSG00000111011|ENST00000331738|RSRC2;ENST00000392442.6_1_12:122990076-122998315:-|nuORF;ENST00000433877.6_1_12:122990076-123005058:-|nuORF;nc|ENSG00000111011|Q7L4I2-2|RSRC2	ENSG00000111011|ENST00000331738|RSRC2	ENSG00000111011|ENST00000331738|RSRC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8275756835938	2	649.827357	1297.64016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.416	1	27.416	26.916	27.916	0								0	0	0	0.35876	1	4649	4649		10.899	3.7972	1				45931	2341	26451	26452	55909	55909					0.0032472005293584516
SVDEESYKTLK	11	Unmodified	_SVDEESYKTLK_					0	0	0		ENSG00000111011|ENST00000331738|RSRC2;ENST00000392442.6_1_12:122990076-122998315:-|nuORF;ENST00000433877.6_1_12:122990076-123005058:-|nuORF;nc|ENSG00000111011|Q7L4I2-2|RSRC2	ENSG00000111011|ENST00000331738|RSRC2	ENSG00000111011|ENST00000331738|RSRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.553955078125	3	433.553997	1297.64016	-0.23018	-9.9794E-05	0.19759	8.5667E-05	-0.032583	-1.4127E-05	433.5539993187764	27.329	1.8697	27.308	26.419	28.289	-0.021412					85	65	2	0	0	0	0.42246	1	4637	4637		8.2864	3.8803	1	564730			45932	2341	26451	26452	55910	55910					0.0032472005293584516
SVDEESYKTLK	11	Unmodified	_SVDEESYKTLK_					0	0	0		ENSG00000111011|ENST00000331738|RSRC2;ENST00000392442.6_1_12:122990076-122998315:-|nuORF;ENST00000433877.6_1_12:122990076-123005058:-|nuORF;nc|ENSG00000111011|Q7L4I2-2|RSRC2	ENSG00000111011|ENST00000331738|RSRC2	ENSG00000111011|ENST00000331738|RSRC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8270263671875	2	649.827357	1297.64016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.382	1	27.36	26.86	27.86	-0.021412								0	0	0	0.35876	1	4642	4642		10.899	7.6176	1				45933	2341	26451	26452	55911	55911					0.0032472005293584516
SVDEESYKTLK	11	Unmodified	_SVDEESYKTLK_					0	0	0		ENSG00000111011|ENST00000331738|RSRC2;ENST00000392442.6_1_12:122990076-122998315:-|nuORF;ENST00000433877.6_1_12:122990076-123005058:-|nuORF;nc|ENSG00000111011|Q7L4I2-2|RSRC2	ENSG00000111011|ENST00000331738|RSRC2	ENSG00000111011|ENST00000331738|RSRC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8276977539062	2	649.827357	1297.64016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.414	1	27.393	26.893	27.893	-0.021412								0	0	0	0.36651	1	4652	4652		5.4027	3.7501	1				45934	2341	26451	26452	55912	55912					0.0032472005293584516
SVDEESYKTLK	11	Unmodified	_SVDEESYKTLK_					0	0	0		ENSG00000111011|ENST00000331738|RSRC2;ENST00000392442.6_1_12:122990076-122998315:-|nuORF;ENST00000433877.6_1_12:122990076-123005058:-|nuORF;nc|ENSG00000111011|Q7L4I2-2|RSRC2	ENSG00000111011|ENST00000331738|RSRC2	ENSG00000111011|ENST00000331738|RSRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.5538330078125	3	433.553997	1297.64016	-0.2664	-0.0001155	0.17289	7.4955E-05	-0.093515	-4.0544E-05	433.5539947882734	27.378	1.6084	27.367	26.595	28.203	-0.01156					99	56	4	0	0	0	0.42582	1	4649	4649		7.846	1.6117	1	451150			45935	2341	26451	26452	55913	55913					0.0032472005293584516
SVDEESYKTLK	11	Unmodified	_SVDEESYKTLK_					0	0	0		ENSG00000111011|ENST00000331738|RSRC2;ENST00000392442.6_1_12:122990076-122998315:-|nuORF;ENST00000433877.6_1_12:122990076-123005058:-|nuORF;nc|ENSG00000111011|Q7L4I2-2|RSRC2	ENSG00000111011|ENST00000331738|RSRC2	ENSG00000111011|ENST00000331738|RSRC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	433.553997	1297.64016	-0.26104	-0.00011318	0.33982	0.00014733	0.078779	3.4155E-05	433.55402245196086	27.354	2.2806	27.354	25.9	28.181	0	0.011155	0.00012223	NaN	8.2864	99	79	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415890			45936	2341	26451	26452							0.0032472005293584516
SVDGAIQQV	9	Unmodified	_SVDGAIQQV_					0	0	0		nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	nc|ENSG00000104064|Q06547-4|GABPB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7405700683594	2	458.740357	915.46616	-0.093824	-4.3041E-05	0.79409	0.00036428	0.70027	0.00032124	458.74046246835235	16.015	0.8716	16.015	15.734	16.606	0					74	30	4	0	0	0	0.26612	1	1319	1319		13.906	1.6654	1	333140			45937	1865	26452	26453	55914	55914					0.005046041381547184
SVDGPVSQK	9	Unmodified	_SVDGPVSQK_					0	0	0		nc|ENSG00000119231|Q96HI0-2|SENP5;ENSG00000119231|ENST00000323460|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7403869628906	2	458.740357	915.46616	0.040094	1.8393E-05	0.40432	0.00018548	0.44441	0.00020387	458.74042845500134	16.073	0.8644	16.011	15.781	16.646	-0.062534					71	29	4	0	0	0	0.25714	1	1330	1330		15.248	1.3424	1	352340			45938	2864	26453	26454	55915	55915					0.005046041381433497
SVDGPVSQK	9	Unmodified	_SVDGPVSQK_					0	0	0		nc|ENSG00000119231|Q96HI0-2|SENP5;ENSG00000119231|ENST00000323460|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	458.740357	915.46616	-0.094705	-4.3445E-05	0.94274	0.00043247	0.84804	0.00038903	458.7404495966061	16.141	0.91919	16.026	15.748	16.667	-0.11434	0.0089389	0.00024093	NaN	15.248	76	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361130			45939	2864	26453	26454							0.005046041381433497
SVDIGEEVLKK	11	Unmodified	_SVDIGEEVLKK_					0	0	0		nc|ENSG00000196335|Q9BXU1-3|STK31;nc|ENSG00000196335|Q9BXU1-2|STK31;ENSG00000196335|ENST00000355870|STK31;STK31|p.E565Sfs*4|1|0.16|ENSG00000196335|chr7:23769733-23769733|A/-|frameshift_variant	nc|ENSG00000196335|Q9BXU1-3|STK31	nc|ENSG00000196335|Q9BXU1-3|STK31	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.5481262207031	3	406.230966	1215.67107	-0.47027	-0.00019104	3.9886	0.0016203	3.5183	0.0014293	406.2338240507139	12.824	0.47343	12.756	12.463	12.936	-0.067496					30	15	3	0	0	0	0.3333	1	164	164		1.3296	0.63198	1	22234			45940	7848	26454	26455	55916	55916					0.07185918157824744
SVDIGLLF	8	Unmodified	_SVDIGLLF_					0	0	0			REV__ENSG00000160007|ENST00000672722|ARHGAP35	REV__ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.9031677246094	2	432.247286	862.48002	0.13001	5.6196E-05	-2.9721	-0.0012847	-2.8421	-0.0012285	432.24550722911823	21.431	0.20271	21.331	21.214	21.417	-0.10034					9	6	2	0	0	0	0.34218	1	2848	2848		5.2307	0	1	19043	+		45941	16873	26455	26456	55917	55917					0.04327881637243536
SVDKKGHV	8	Unmodified	_SVDKKGHV_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENST00000536999.1_1_12:6705170-6707214:-|nuORF	ENSG00000111642|ENST00000544040|CHD4	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2691650390625	2	435.245609	868.476666	-0.20343	-8.8542E-05	0.21043	9.1588E-05	0.0069985	3.0461E-06	435.2456257090225	16.785	0.35477	16.671	16.476	16.831	-0.11434					26	12	3	0	0	0	0.33245	1	1446	1446		13.508	0	1	183950			45942	2373	26456	26457	55918	55918					0.03716631583245089
SVDKLVIQK	9	Unmodified	_SVDKLVIQK_					0	0	0		ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.3187866210938	2	515.318774	1028.623	0.19567	0.00010083	-0.10438	-5.3788E-05	0.091291	4.7044E-05	515.3186991103826	26.27	0.91639	26.27	26.009	26.925	0					78	31	4	0	0	0	0.00054549	4	4315	4269;4315;4361;4415		128.57	0	1	1060200			45943	11513	26457	26458	55919;55920;55921;55922	55920					0.10982889028446152
SVDKLVIQK	9	Unmodified	_SVDKLVIQK_					0	0	0		ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3187866210938	2	515.318774	1028.623	0.11087	5.7133E-05	0.021966	1.1319E-05	0.13283	6.8452E-05	515.3187581003609	26.282	0.98252	26.244	25.985	26.968	-0.038671					87	34	4	0	0	0	3.4202E-05	2	4322	4276;4322		151.48	0	1	1126100			45944	11513	26457	26458	55923;55924	55924					0.10982889028446152
SVDKLVIQK	9	Unmodified	_SVDKLVIQK_					0	0	0		ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	ENST00000523612.1_1_8:142469282-142469963:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.3187866210938	2	515.318774	1028.623	0.24605	0.00012679	-0.15817	-8.1509E-05	0.087878	4.5285E-05	515.3186608936389	26.305	1.1091	26.283	26.013	27.122	-0.022238					85	38	4	0	0	0	0.00054549	4	4332	4282;4332;4368;4416		128.57	0	1	1067500			45945	11513	26457	26458	55925;55926;55927;55928	55926					0.10982889028446152
SVDKPGIVV	9	Unmodified	_SVDKPGIVV_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.K2432Nfs*23|1|0.23|ENSG00000005810|chr13:77140155-77140155|T/-|frameshift_variant;MYCBP2|p.E3042Vfs*11|1|0.09|ENSG00000005810|chr13:77097915-77097916|-/GGGAAGA|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2641296386719	2	457.271293	912.528032	0.11428	5.2256E-05	4.1118	0.0018802	4.226	0.0019324	457.2739887674371	70.023	0.72836	70.001	69.489	70.217	-0.022087					68	26	3	0	0	0	0.19747	1	17672	17672		24.021	0	1	267330			45946	342	26458	26459	55929	55929					0.06826955557301062
SVDKTVIQK	9	Unmodified	_SVDKTVIQK_					0	0	0		ENST00000558213.3_1_15:67920913-67921003:+|nuORF;ENST00000432375.1_1_6:32293389-32293596:+|nuORF;ENST00000484852.1_1_3:147884522-147885023:-|nuORF;ENST00000444886.1_1_9:128358162-128358726:+|nuORF;ENST00000575692.1_1_17:2210089-2210875:+|nuORF	ENST00000558213.3_1_15:67920913-67921003:+|nuORF	ENST00000558213.3_1_15:67920913-67921003:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7877502441406	2	509.300581	1016.58661	0.17243	8.7819E-05	2.1828	0.0011117	2.3552	0.0011995	509.80435975601404	23.646	0.25416	23.574	23.474	23.728	-0.072559					13	8	2	0	0	0	0.23767	1	3544	3544		18.146	1.0335	1	19726			45947	10481	26459	26460	55930	55930					0.07898012131761334
SVDLAFFIT	9	Unmodified	_SVDLAFFIT_					0	0	0		ENSG00000182782|ENST00000328880|HCAR2;ENSG00000255398|ENST00000528880|HCAR3	ENSG00000182782|ENST00000328880|HCAR2	ENSG00000182782|ENST00000328880|HCAR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7714538574219	2	506.771126	1011.5277	-0.050275	-2.5478E-05	0.82881	0.00042002	0.77853	0.00039454	506.7714481403306	14.071	0.54173	14.005	13.747	14.289	-0.066068					31	18	2	0	0	0	0.34681	1	660	660		1.8442	0	1	93055			45948	7317	26460	26461	55931	55931					0.02239535837418316
SVDLAFFIT	9	Unmodified	_SVDLAFFIT_					0	0	0		ENSG00000182782|ENST00000328880|HCAR2;ENSG00000255398|ENST00000528880|HCAR3	ENSG00000182782|ENST00000328880|HCAR2	ENSG00000182782|ENST00000328880|HCAR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	506.771126	1011.5277	-0.057906	-2.9345E-05	0.79297	0.00040185	0.73506	0.00037251	506.7714325003633	14.142	0.58843	14.038	13.685	14.273	-0.10466	0.03095	-2.2301E-05	NaN	1.8442	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133320			45949	7317	26460	26461							0.02239535837418316
SVDLLITL	8	Unmodified	_SVDLLITL_					0	0	0		ENSG00000211448|ENST00000438257|DIO2;nc|ENSG00000211448|Q92813-2|DIO2;ENST00000438257.8_2_14:80669457-80677836:-|nuORF	ENSG00000211448|ENST00000438257|DIO2	ENSG00000211448|ENST00000438257|DIO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2574768066406	2	437.268219	872.521884	0.1577	6.8956E-05	-0.41254	-0.00018039	-0.25484	-0.00011143	437.2678872031646	86.947	0.6064	86.941	86.698	87.304	-0.0056229					44	24	2	0	0	0	0.42077	1	22972	22972		15.847	0	1	692080			45950	8326	26461	26462	55932	55932					0.08052437325750361
SVDLYLLDSLR	11	Unmodified	_SVDLYLLDSLR_					0	0	0		ENST00000393784.7_1_5:172378823-172378931:+|nuORF	ENST00000393784.7_1_5:172378823-172378931:+|nuORF	ENST00000393784.7_1_5:172378823-172378931:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.9060363769531	3	431.906482	1292.69762	-0.10127	-4.3738E-05	-0.78715	-0.00033997	-0.88841	-0.00038371	431.9062057380084	40.62	0.99772	40.719	40.427	41.425	0.099403					127	36	5	0	0	0	0.41517	1	8670	8670		9.2438	0	1	8822900			45951	10059	26462	26463	55933	55933					0.06297607049191356
SVDNPKLVVK	10	Unmodified	_SVDNPKLVVK_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3292236328125	2	549.829506	1097.64446	0.21865	0.00012022	-1.1742	-0.0006456	-0.95553	-0.00052538	550.3294855162918	23.529	1.0379	23.529	23.021	24.058	0					53	35	2	0	0	0	0.39009	1	3495	3495		5.2969	1.3525	1	183920	+		45952	14064	26463	26464	55934	55934					0.0995427405719056
SVDNPKLVVK	10	Unmodified	_SVDNPKLVVK_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3292236328125	2	549.829506	1097.64446	0.4408	0.00024237	0.44967	0.00024724	0.89048	0.00048961	549.8299696520614	23.442	0.86298	23.397	22.951	23.814	-0.044867					50	30	3	0	0	0	0.31958	1	3557	3557		5.2969	1.3525	1	129290	+		45953	14064	26463	26464	55935	55935					0.0995427405719056
SVDPDFLKSFL	11	Unmodified	_SVDPDFLKSFL_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.5543212890625	3	423.223811	1266.6496	-0.26505	-0.00011217	-0.62571	-0.00026482	-0.89076	-0.00037699	423.22338204321983	22.81	0.42819	22.81	22.476	22.904	0					22	14	2	0	0	0	0.33287	1	3187	3187		2.8433	0	1	25258			45954	7673	26464	26465	55936	55936					0.02694533129147203
SVDPKNYPK	9	Unmodified	_SVDPKNYPK_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2770385742188	2	524.277106	1046.53966	0.17482	9.1656E-05	-0.70197	-0.00036803	-0.52714	-0.00027637	524.2767455000284	18.398	1.0812	18.34	17.819	18.901	-0.058172					125	38	5	0	0	0	0.0028542	4	1898	1853;1898;1943;1998		103.42	63.462	1	1964600			45955	3216	26465	26466	55937;55938;55939;55940	55938					0.01825152580613576
SVDPKNYPK	9	Unmodified	_SVDPKNYPK_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	524.277106	1046.53966	0.37164	0.00019484	-0.79115	-0.00041478	-0.41951	-0.00021994	524.2767328513227	18.242	1.0683	18.242	17.771	18.839	0	-0.044552	-3.2895E-05	NaN	103.42	122	36	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1910400			45956	3216	26465	26466							0.01825152580613576
SVDPKNYPK	9	Unmodified	_SVDPKNYPK_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	524.277106	1046.53966	0.27031	0.00014172	-0.76731	-0.00040228	-0.49699	-0.00026056	524.2767278864641	18.394	1.0249	18.277	17.812	18.837	-0.11739	-0.0093258	-7.894E-06	NaN	103.42	120	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1960200			45957	3216	26465	26466							0.01825152580613576
SVDPVSVNR	9	Unmodified	_SVDPVSVNR_					0	0	0		ENST00000468970.1_1_1:150804279-150808966:-|nuORF;nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT	ENST00000468970.1_1_1:150804279-150808966:-|nuORF	ENST00000468970.1_1_1:150804279-150808966:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7591247558594	2	486.759081	971.503609	-0.036827	-1.7926E-05	-0.062781	-3.0559E-05	-0.099607	-4.8485E-05	486.75912226085313	28.056	0.48348	28.051	27.822	28.306	-0.0042572					36	16	3	0	0	0	0.21538	1	4858	4858		26.268	13.226	1	235460			45958	4515	26466	26467	55941	55941					0.016716954037633514
SVDPVSVNR	9	Unmodified	_SVDPVSVNR_					0	0	0		ENST00000468970.1_1_1:150804279-150808966:-|nuORF;nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT	ENST00000468970.1_1_1:150804279-150808966:-|nuORF	ENST00000468970.1_1_1:150804279-150808966:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	486.759081	971.503609	-0.11711	-5.7006E-05	0.25364	0.00012346	0.13652	6.6454E-05	486.75893200828034	28.109	0.60616	28.109	27.84	28.446	0	0.038079	0.00016192	NaN	26.268	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237450			45959	4515	26466	26467							0.016716954037633514
SVDPVSVNR	9	Unmodified	_SVDPVSVNR_					0	0	0		ENST00000468970.1_1_1:150804279-150808966:-|nuORF;nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT	ENST00000468970.1_1_1:150804279-150808966:-|nuORF	ENST00000468970.1_1_1:150804279-150808966:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	486.759081	971.503609	-0.090312	-4.396E-05	0.10018	4.8766E-05	0.0098719	4.8053E-06	486.7589642379977	28.052	0.52996	28.052	27.764	28.294	0.0004673	-0.018721	1.2533E-05	NaN	26.268	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263650			45960	4515	26466	26467							0.016716954037633514
SVDQWRKYARV	11	Unmodified	_SVDQWRKYARV_					0	0	0			REV__nc|ENSG00000175164|P16442|ABO	REV__nc|ENSG00000175164|P16442|ABO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.92047119140625	3	469.921237	1406.74188	-0.18129	-8.5192E-05	-1.3683	-0.00064301	-1.5496	-0.0007282	469.9207078465498	22.992	0.60142	22.992	22.622	23.224	0					39	20	3	0	0	0	0.45202	1	3348	3348		4.4062	0.56024	1	100140	+		45961	17875	26467	26468	55942	55942					0.054780559860319045
SVDQWRKYARV	11	Unmodified	_SVDQWRKYARV_					0	0	0			REV__nc|ENSG00000175164|P16442|ABO	REV__nc|ENSG00000175164|P16442|ABO	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	469.921237	1406.74188	-0.18129	-8.5192E-05	-1.3683	-0.00064301	-1.5496	-0.0007282	469.9207078465498	22.992	0.60142	22.992	22.622	23.224	0	-0.01505	3.1682E-06	NaN	4.4062	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100140	+		45962	17875	26467	26468							0.054780559860319045
SVDQWRKYARV	11	Unmodified	_SVDQWRKYARV_					0	0	0			REV__nc|ENSG00000175164|P16442|ABO	REV__nc|ENSG00000175164|P16442|ABO	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	469.921237	1406.74188	-0.080725	-3.7934E-05	-1.2618	-0.00059297	-1.3426	-0.0006309	469.9206842640797	23.104	0.61366	23.016	22.685	23.298	-0.087608	0.0086982	0.00015328	NaN	4.4062	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137380	+		45963	17875	26467	26468							0.054780559860319045
SVDQWRKYARV	11	Unmodified	_SVDQWRKYARV_					0	0	0			REV__nc|ENSG00000175164|P16442|ABO	REV__nc|ENSG00000175164|P16442|ABO	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	469.921237	1406.74188	0.14428	6.78E-05	-1.4409	-0.00067712	-1.2966	-0.00060932	469.92051701207924	23.059	0.64963	23.014	22.735	23.385	-0.044867	0.0063516	-9.9168E-05	NaN	4.4062	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148930	+		45964	17875	26467	26468							0.054780559860319045
SVDSLPLAK	9	Unmodified	_SVDSLPLAK_					0	0	0		nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.79058837890625	2	465.26875	928.522947	-0.057338	-2.6678E-05	-0.26299	-0.00012236	-0.32032	-0.00014904	465.26861612874086	28.796	0.59847	28.792	28.438	29.036	-0.0042572					31	20	2	0	0	0	0.2451	1	5074	5074		10.824	2.0785	1	169550			45965	2327	26468	26469	55943	55943					0.05582651694669494
SVDSLPLAK	9	Unmodified	_SVDSLPLAK_					0	0	0		nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	465.26875	928.522947	-0.014657	-6.8193E-06	0.045259	2.1057E-05	0.030602	1.4238E-05	465.2685423480969	28.831	0.69666	28.831	28.472	29.169	0	0.03577	0.00014859	NaN	10.824	70	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235540			45966	2327	26468	26469							0.05582651694669494
SVDSQILYY	9	Unmodified	_SVDSQILYY_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000484580.6_1_17:26883511-26887327:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2694702148438	2	544.268947	1086.52334	0.5386	0.00029314	0.89242	0.00048572	1.431	0.00077886	544.2694297859543	62.529	0.69493	62.529	62.316	63.011	0					71	25	4	0	0	0	0.10058	1	15431	15431		45.7	5.7423	1	659380			45967	1296	26469	26470	55944	55944					-0.01645973376139409
SVDSQILYY	9	Unmodified	_SVDSQILYY_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000484580.6_1_17:26883511-26887327:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2694091796875	2	544.268947	1086.52334	0.67158	0.00036552	0.94058	0.00051193	1.6122	0.00087745	544.2696136639075	62.438	0.7353	62.535	62.332	63.068	0.096985					58	26	3	0	0	0	0.10058	1	15401	15401		45.7	5.7423	1	704910			45968	1296	26469	26470	55945	55945					-0.01645973376139409
SVDSQILYY	9	Unmodified	_SVDSQILYY_					0	0	0		nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000484580.6_1_17:26883511-26887327:-|nuORF	nc|ENSG00000087111|Q96S52-2|PIGS	nc|ENSG00000087111|Q96S52-2|PIGS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2691650390625	2	544.268947	1086.52334	0.63165	0.00034379	0.66514	0.00036201	1.2968	0.0007058	544.2692481592652	62.564	0.60979	62.555	62.278	62.887	-0.0085526					55	22	3	0	0	0	0.034444	1	15439	15439		58.679	10.333	1	646970			45969	1296	26469	26470	55946	55946					-0.01645973376139409
SVDSQRLL	8	Unmodified	_SVDSQRLL_					0	0	0			REV__ENSG00000166192|ENST00000340912|SENP8	REV__ENSG00000166192|ENST00000340912|SENP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7355041503906	2	459.256174	916.497795	-0.1217	-5.5893E-05	-0.57113	-0.00026229	-0.69283	-0.00031819	459.25564546563817	27.47	0.52855	27.47	27.172	27.7	0					34	17	3	0	0	0	0.32886	1	4663	4663		15.847	5.7733	1	145720	+		45970	17298	26470	26471	55947	55947					0.03620596892096728
SVDWWALG	8	Unmodified	_SVDWWALG_					0	0	0		nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENST00000505322.5_1_1:2100378-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI;ENSG00000171132|ENST00000306156|PRKCE	nc|ENSG00000067606|Q05513-2|PRKCZ	nc|ENSG00000067606|Q05513-2|PRKCZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2266540527344	2	467.226885	932.439217	-0.06126	-2.8622E-05	-0.30979	-0.00014474	-0.37105	-0.00017336	467.2266546033469	18.925	0.68056	18.867	18.57	19.251	-0.058174					35	23	2	0	0	0	0.34434	1	2134	2134		0.79363	0	1	68386			45971	867	26471	26472	55948	55948					-0.029704596823876273
SVEAQTALK	9	Unmodified	_SVEAQTALK_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7637634277344	2	473.763832	945.513111	0.075255	3.5653E-05	-0.093907	-4.449E-05	-0.018653	-8.837E-06	473.7638412185833	23.389	0.96311	23.301	23.046	24.009	-0.087608					64	33	3	0	0	0	0.14306	1	3427	3427		45.74	11.338	1	444400			45972	500	26472	26473	55949	55949					0.03817463689267697
SVEAQTALK	9	Unmodified	_SVEAQTALK_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.2388916015625	2	473.763832	945.513111	0.23419	0.00011095	-0.19292	-9.1398E-05	0.041274	1.9554E-05	473.76375625104026	23.366	1.0427	23.321	23.06	24.103	-0.044867					73	36	4	0	0	0	0.14306	1	3389	3389		45.74	11.338	1	444280			45973	500	26472	26473	55950	55950					0.03817463689267697
SVEDPTKQTK	10	Unmodified	_SVEDPTKQTK_					0	0	0		ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.7958374023438	2	566.79586	1131.57717	-0.051113	-2.8971E-05	-1.8714	-0.0010607	-1.9225	-0.0010897	566.7959783075364	14.385	0.65064	14.385	14.138	14.789	0					52	22	4	0	0	0	0.29048	1	741	741		21.59	12.845	1	103490			45974	6728	26473	26474	55951	55951					0.016641990555854136
SVEDPTKQTK	10	Unmodified	_SVEDPTKQTK_					0	0	0		ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	ENSG00000173548|ENST00000308527|SNX33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.7964477539062	2	566.79586	1131.57717	-0.066161	-3.75E-05	-1.5814	-0.00089632	-1.6475	-0.00093382	566.7958525494389	14.511	0.86252	14.445	14.007	14.869	-0.066068					59	30	3	0	0	0	0.34483	1	782	782		13.615	6.8917	1	86015			45975	6728	26473	26474	55952	55952					0.016641990555854136
SVEDRNRIGYD	11	Unmodified	_SVEDRNRIGYD_					0	0	0			REV__ENST00000397876.6_1_16:106379-107140:+|nuORF	REV__ENST00000397876.6_1_16:106379-107140:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.5735778808594	3	441.881107	1322.62149	-0.14642	-6.47E-05	1.3661	0.00060365	1.2197	0.00053895	441.88162753452394	14.678	0.57276	14.573	14.338	14.91	-0.10466					33	19	2	0	0	0	0.3333	1	825	825		1.3296	1.1703	1	33137	+		45976	16958	26474	26475	55953	55953					-0.026913967982409304
SVEEGEKVVK	10	Unmodified	_SVEEGEKVVK_					0	0	0		HSD17B4|p.A662Lfs*7|1|0.22|ENSG00000133835|chr5:119531392-119531392|G/-|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000515235.6_1_5:118788237-118827866:+|nuORF;ENST00000511186.5_1_5:118788168-118811542:+|nuORF	HSD17B4|p.A662Lfs*7|1|0.22|ENSG00000133835|chr5:119531392-119531392|G/-|frameshift_variant;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	ENST00000515235.6_1_5:118788237-118827866:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.3006591796875	2	552.300778	1102.587	0.33754	0.00018642	0.066283	3.6608E-05	0.40382	0.00022303	552.3006843948456	17.255	0.62064	17.255	17.069	17.69	0					67	21	4	0	0	0	0.024262	1	1569	1569		67.081	40.813	1	364880			45977	11423;3733	26475	26476	55954	55954					0.03981387060957786
SVEEGEKVVK	10	Unmodified	_SVEEGEKVVK_					0	0	0		HSD17B4|p.A662Lfs*7|1|0.22|ENSG00000133835|chr5:119531392-119531392|G/-|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000515235.6_1_5:118788237-118827866:+|nuORF;ENST00000511186.5_1_5:118788168-118811542:+|nuORF	HSD17B4|p.A662Lfs*7|1|0.22|ENSG00000133835|chr5:119531392-119531392|G/-|frameshift_variant;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	ENST00000515235.6_1_5:118788237-118827866:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.3009033203125	2	552.300778	1102.587	0.19802	0.00010936	0.40099	0.00022147	0.59901	0.00033083	552.3009762661809	17.502	0.64658	17.385	17.111	17.757	-0.11739					62	22	4	0	0	0	0.10152	2	1674	1625;1674		47.732	22.741	1	323930			45978	11423;3733	26475	26476	55955;55956	55956					0.03981387060957786
SVEEGEKVVK	10	Unmodified	_SVEEGEKVVK_					0	0	0		HSD17B4|p.A662Lfs*7|1|0.22|ENSG00000133835|chr5:119531392-119531392|G/-|frameshift_variant;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000515235.6_1_5:118788237-118827866:+|nuORF;ENST00000511186.5_1_5:118788168-118811542:+|nuORF	HSD17B4|p.A662Lfs*7|1|0.22|ENSG00000133835|chr5:119531392-119531392|G/-|frameshift_variant;ENST00000515235.6_1_5:118788237-118827866:+|nuORF	ENST00000515235.6_1_5:118788237-118827866:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.3012084960938	2	552.300778	1102.587	0.343	0.00018944	0.27194	0.00015019	0.61494	0.00033963	552.300879458728	17.411	0.71363	17.35	17.103	17.817	-0.060429					66	24	4	0	0	0	0.041387	1	1639	1639		60.899	34.879	1	342850			45979	11423;3733	26475	26476	55957	55957					0.03981387060957786
SVEEISTLVQK	11	Unmodified	_SVEEISTLVQK_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.8406982421875	2	616.840268	1231.66598	0.5076	0.00031311	-0.25038	-0.00015444	0.25723	0.00015867	616.8401093235577	47.222	0.89328	47.222	46.904	47.797	0					117	31	5	0	0	0	6.8333E-57	6	10666	10666;10708;10751;10794;10848;10857		276.09	182.92	1	14891000			45980	708	26476	26477	55958;55959;55960;55961;55962;55963	55958					0.05941614295238651
SVEEISTLVQK	11	Unmodified	_SVEEISTLVQK_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2165832519531	3	411.562604	1231.66598	0.2515	0.00010351	-1.0055	-0.00041385	-0.75405	-0.00031034	411.56222456876236	47.21	0.50147	47.21	46.992	47.493	0					28	17	3	0	0	0	0.3074	1	10703	10703		27.129	17.365	1	329340			45981	708	26476	26477	55964	55964					0.05941614295238651
SVEEISTLVQK	11	Unmodified	_SVEEISTLVQK_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.8406372070312	2	616.840268	1231.66598	0.12716	7.8435E-05	0.16472	0.00010161	0.29188	0.00018004	616.8403931972897	47.19	0.91147	47.243	46.929	47.841	0.052574					126	33	6	0	0	0	1.0169E-44	6	10708	10640;10660;10708;10757;10802;10852		260.19	160.1	1	16272000			45982	708	26476	26477	55965;55966;55967;55968;55969;55970	55967					0.05941614295238651
SVEEISTLVQK	11	Unmodified	_SVEEISTLVQK_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.562604	1231.66598	0.12885	5.3029E-05	0.072704	2.9922E-05	0.20155	8.2951E-05	411.5620491030601	47.165	0.39173	47.217	47.014	47.405	0.052574	-0.0063469	0.0013225	NaN	27.129	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332370			45983	708	26476	26477							0.05941614295238651
SVEEISTLVQK	11	Unmodified	_SVEEISTLVQK_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	411.562604	1231.66598	0.81425	0.00033512	-1.5631	-0.00064331	-0.74885	-0.0003082	411.5617521751538	47.189	0.39843	47.243	47.093	47.491	0.054371	0.019954	-0.00069717	NaN	27.129	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374680			45984	708	26476	26477							0.05941614295238651
SVEERITQVAK	11	Unmodified	_SVEERITQVAK_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	ENSG00000111642|ENST00000544040|CHD4;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.3514404296875	2	630.351334	1258.68811	0.48883	0.00030814	-0.54475	-0.00034338	-0.055915	-3.5246E-05	630.3508725254338	32.006	0.58586	32.006	31.829	32.415	0					47	20	3	0	0	0	0.005006	2	6061	6061;6112		80.24	34.5	1	620530			45985	2373;6414;2718	26477	26478	55971;55972	55971					0.06911838763653577
SVEERITQVAK	11	Unmodified	_SVEERITQVAK_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	ENSG00000111642|ENST00000544040|CHD4;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3	ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.9349060058594	3	420.569981	1258.68811	0.097436	4.0979E-05	-0.033118	-1.3928E-05	0.064318	2.705E-05	420.5699088987585	32.052	1.1517	32.052	31.772	32.924	0					60	40	3	0	0	0	0.32951	1	6031	6031		11.065	6.6591	1	733800			45986	2373;6414;2718	26477	26478	55973	55973					0.06911838763653577
SVEERITQVAK	11	Unmodified	_SVEERITQVAK_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	ENSG00000111642|ENST00000544040|CHD4;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.5699768066406	3	420.569981	1258.68811	0.25204	0.000106	-0.058685	-2.4681E-05	0.19336	8.132E-05	420.5699372981812	31.94	0.69796	31.982	31.823	32.521	0.042366					49	24	4	0	0	0	0.40256	1	6042	6042		6.3051	1.2576	1	875830			45987	2373;6414;2718	26477	26478	55974	55974					0.06911838763653577
SVEERITQVAK	11	Unmodified	_SVEERITQVAK_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	ENSG00000111642|ENST00000544040|CHD4;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.3516235351562	2	630.351334	1258.68811	0.42237	0.00026624	-0.52547	-0.00033123	-0.10311	-6.4993E-05	630.3510414720054	31.941	0.55857	31.984	31.823	32.382	0.042366					34	19	2	0	0	0	0.058973	2	6053	6053;6113		50.648	24.627	1	732080			45988	2373;6414;2718	26477	26478	55975;55976	55975					0.06911838763653577
SVEERITQVAK	11	Unmodified	_SVEERITQVAK_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	ENSG00000111642|ENST00000544040|CHD4;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.3511962890625	2	630.351334	1258.68811	0.38275	0.00024127	-0.54282	-0.00034217	-0.16007	-0.0001009	630.3510381210764	31.92	0.629	31.961	31.772	32.401	0.040991					43	21	3	0	0	0	0.012355	1	6034	6034		64.688	32.65	1	669560			45989	2373;6414;2718	26477	26478	55977	55977					0.06911838763653577
SVEERITQVAK	11	Unmodified	_SVEERITQVAK_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	ENSG00000111642|ENST00000544040|CHD4;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3	ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.5699462890625	3	420.569981	1258.68811	0.11239	4.7267E-05	0.13306	5.5961E-05	0.24545	0.00010323	420.5699749568129	31.946	0.81742	31.987	31.748	32.565	0.040991					59	28	3	0	0	0	0.35939	1	6039	6039		10.016	4.493	1	1084700			45990	2373;6414;2718	26477	26478	55978	55978					0.06911838763653577
SVEERITQVAK	11	Unmodified	_SVEERITQVAK_					0	0	0		ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	ENSG00000111642|ENST00000544040|CHD4;ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3	ENSG00000111642|ENST00000544040|CHD4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	420.569981	1258.68811	0.25204	0.000106	-0.058685	-2.4681E-05	0.19336	8.132E-05	420.5699372981812	31.94	0.69796	31.982	31.823	32.521	0.042366	-0.024875	-9.3982E-05	NaN	11.065	49	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	875830			45991	2373;6414;2718	26477	26478							0.06911838763653577
SVEFDREFWK	10	Unmodified	_SVEFDREFWK_					0	0	0		nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12;ANKRD12|p.K926Rfs*10|1|0.56|ENSG00000101745|chr18:9256043-9256044|AA/-|frameshift_variant;ANKRD12|p.K1142Lfs*10|1|0.12|ENSG00000101745|chr18:9256689-9256690|-/TTTAAGGCTT|frameshift_variant	nc|ENSG00000101745|Q6UB98-2|ANKRD12	nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.7774963378906	3	448.21906	1341.63535	0.064867	2.9075E-05	-0.18655	-8.3614E-05	-0.12168	-5.4539E-05	448.55294504971636	33.098	0.19133	33.098	33.011	33.202	0					9	6	2	0	0	0	0.31969	1	6390	6390		5.7834	1.6668	1	44782			45992	1718	26478	26479	55979	55979					-0.021801192991688367
SVELPDSIGF	10	Unmodified	_SVELPDSIGF_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8062744140625	2	532.268947	1062.52334	0.1467	7.8085E-05	-1.5893	-0.00084595	-1.4426	-0.00076787	532.2667547498834	14.532	0.29877	14.466	14.289	14.588	-0.066068					18	10	3	0	0	0	0.32033	1	768	768		3.5965	1.5367	1	30219	+		45993	16705;23038	26479	26480	55980	55980					-0.005419733761300449
SVELPIVGK	9	Unmodified	_SVELPIVGK_					0	0	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2869567871094	2	471.286943	940.559333	0.13216	6.2284E-05	-0.12122	-5.7127E-05	0.010943	5.1572E-06	471.2867885133136	50.04	1.5751	50.04	49.321	50.896	0					159	57	4	0	0	0	0.0016712	5	11554	11507;11554;11603;11651;11697		114.2	60.369	1	6404200			45994	8525	26480	26481	55981;55982;55983;55984;55985	55982					0.08667528591388418
SVEMLTLETL	10	Unmodified	_SVEMLTLETL_					0	0	0		ENST00000490506.5_1_14:23415521-23415656:-|nuORF	ENST00000490506.5_1_14:23415521-23415656:-|nuORF	ENST00000490506.5_1_14:23415521-23415656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2994995117188	2	568.29939	1134.58423	0.51569	0.00029306	-0.41769	-0.00023737	0.097997	5.5692E-05	568.2992269275586	54.198	1.498	54.198	53.723	55.221	0					131	54	3	0	0	0	0.34325	1	12944	12944		13.906	0.86358	1	8873800			45995	11161	26481	26482	55986	55986					0.022317956118058646
SVEMLTLETL	10	Unmodified	_SVEMLTLETL_					0	0	0		ENST00000490506.5_1_14:23415521-23415656:-|nuORF	ENST00000490506.5_1_14:23415521-23415656:-|nuORF	ENST00000490506.5_1_14:23415521-23415656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2996826171875	2	568.29939	1134.58423	0.55527	0.00031556	-0.43502	-0.00024722	0.12026	6.8341E-05	568.2992242401383	54.182	1.4336	54.245	53.747	55.181	0.063206					125	53	3	0	0	0	0.34325	2	12878	12878;12928		13.906	13.906	1	8181700			45996	11161	26481	26482	55987;55988	55987					0.022317956118058646
SVEMLTLETL	10	Unmodified	_SVEMLTLETL_					0	0	0		ENST00000490506.5_1_14:23415521-23415656:-|nuORF	ENST00000490506.5_1_14:23415521-23415656:-|nuORF	ENST00000490506.5_1_14:23415521-23415656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2996215820312	2	568.29939	1134.58423	0.43898	0.00024947	-0.23746	-0.00013495	0.20153	0.00011453	568.2993362801745	54.233	1.3448	54.217	53.738	55.083	-0.015923					147	48	5	0	0	0	0.34325	2	12884	12884;12940		13.906	13.906	1	9128300			45997	11161	26481	26482	55989;55990	55989					0.022317956118058646
SVEMLTLETL	10	Unmodified	_SVEMLTLETL_					0	0	0		ENST00000490506.5_1_14:23415521-23415656:-|nuORF	ENST00000490506.5_1_14:23415521-23415656:-|nuORF	ENST00000490506.5_1_14:23415521-23415656:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	568.29939	1134.58423	0.51569	0.00029306	-0.41769	-0.00023737	0.097997	5.5692E-05	568.2992269275586	54.198	1.498	54.198	53.723	55.221	0	-0.02195	-5.6985E-05	NaN	13.906	131	54	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8873800			45998	11161	26481	26482							0.022317956118058646
SVEMLTLETL	10	Unmodified	_SVEMLTLETL_					0	0	0		ENST00000490506.5_1_14:23415521-23415656:-|nuORF	ENST00000490506.5_1_14:23415521-23415656:-|nuORF	ENST00000490506.5_1_14:23415521-23415656:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	568.29939	1134.58423	0.43898	0.00024947	-0.23746	-0.00013495	0.20153	0.00011453	568.2993362801745	54.233	1.3448	54.217	53.738	55.083	-0.015923	-0.0032072	0.00014787	NaN	13.906	147	48	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9128300			45999	11161	26481	26482							0.022317956118058646
SVERERYRR	9	Unmodified	_SVERERYRR_					0	0	0			REV__ENST00000434052.5_1_19:58817468-58817630:+|nuORF	REV__ENST00000434052.5_1_19:58817468-58817630:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.21649169921875	3	417.561932	1249.66397	-0.19432	-8.1142E-05	1.083	0.00045223	0.88869	0.00037108	417.5623192384938	18.578	0.57182	18.578	18.243	18.814	0					31	19	2	0	0	0	0.26127	1	1918	1918		2.7352	1.6637	1	73324	+		46000	20975	26482	26483	55991	55991					0.04912043120657472
SVERIATCPA	10	Unmodified	_SVERIATCPA_					0	0	0			REV__ENST00000522234.5_1_X:47078210-47085639:+|nuORF;REV__ENSG00000059758|ENST00000261211|CDK17	REV__ENSG00000059758|ENST00000261211|CDK17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7708740234375	2	523.768591	1045.52263	0.20781	0.00010885	-0.47144	-0.00024693	-0.26363	-0.00013808	523.7682960896467	24.688	1.2557	24.656	24.344	25.599	-0.031408					92	43	3	0	0	0	0.37133	1	3944	3944		8.7454	2.0222	1	908570	+		46001	21911;13617	26483	26484	55992	55992					0.0016890870317638473
SVESSNQTHNE	11	Unmodified	_SVESSNQTHNE_					0	0	0			REV__ENSG00000072786|ENST00000176763|STK10	REV__ENSG00000072786|ENST00000176763|STK10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.5423278808594	3	411.177701	1230.51127	-0.063486	-2.6104E-05	0.49773	0.00020466	0.43424	0.00017855	411.1779719805385	17.969	0.57311	17.909	17.766	18.339	-0.060429					41	20	3	0	0	0	0.33318	1	1804	1804		0.45452	0	1	53355	+		46002	13764	26484	26485	55993	55993					-0.09476241857259993
SVEVLLTL	8	Unmodified	_SVEVLLTL_					0	0	0			REV__ENSG00000160606|ENST00000292090|TLCD1	REV__ENSG00000160606|ENST00000292090|TLCD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.25726318359375	2	437.268219	872.521884	0.17391	7.6047E-05	-0.28362	-0.00012402	-0.1097	-4.7969E-05	437.26795160973495	87.051	0.51089	87.051	86.728	87.239	0					36	19	2	0	0	0	0.11736	2	22869	22869;22920		57.471	0	1	573550	+		46003	16909	26485	26486	55994;55995	55994					0.08052437325773099
SVEVLLTL	8	Unmodified	_SVEVLLTL_					0	0	0			REV__ENSG00000160606|ENST00000292090|TLCD1	REV__ENSG00000160606|ENST00000292090|TLCD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2574157714844	2	437.268219	872.521884	0.093995	4.1101E-05	-0.31824	-0.00013916	-0.22425	-9.8057E-05	437.2679072763903	86.818	0.57176	86.905	86.682	87.254	0.08709					43	23	2	0	0	0	0.28696	1	22932	22932		32.305	0	1	599770	+		46004	16909	26485	26486	55996	55996					0.08052437325773099
SVEVLLTL	8	Unmodified	_SVEVLLTL_					0	0	0			REV__ENSG00000160606|ENST00000292090|TLCD1	REV__ENSG00000160606|ENST00000292090|TLCD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2573547363281	2	437.268219	872.521884	0.1577	6.8956E-05	-0.41254	-0.00018039	-0.25484	-0.00011143	437.2678872031646	86.947	0.6064	86.941	86.698	87.304	-0.0056229					44	24	2	0	0	0	0.072895	1	22924	22924		67.344	0	1	692080	+		46005	16909	26485	26486	55997	55997					0.08052437325773099
SVEYDDRCL	9	Unmodified	_SVEYDDRCL_					0	0	0			REV__ENST00000586733.1_1_17:73754139-73754584:-|nuORF	REV__ENST00000586733.1_1_17:73754139-73754584:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2799072265625	2	550.239864	1098.46517	0.57806	0.00031807	-0.12392	-6.8184E-05	0.45415	0.00024989	550.2397618240054	40.259	0.411	40.358	40.23	40.641	0.099407					19	14	2	0	0	0	0.24688	1	8557	8557		10.074	0	1	160110	+		46006	22522	26486	26487	55998	55998					-0.08011978293075117
SVFCNKFCF	9	Unmodified	_SVFCNKFCF_					0	0	0		ENST00000480655.5_1_20:34262894-34263203:-|nuORF	ENST00000480655.5_1_20:34262894-34263203:-|nuORF	ENST00000480655.5_1_20:34262894-34263203:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2781982421875	2	547.743531	1093.47251	0.46036	0.00025216	2.6397	0.0014459	3.1001	0.0016981	547.7452070580234	53.496	0.5193	53.553	53.325	53.845	0.056255					25	19	2	0	0	0	0.25622	1	12687	12687		7.2892	0.93513	1	229440			46007	11012	26487	26488	55999	55999					-0.0704891722634784
SVFDSSSDMEK	11	Oxidation (M)	_SVFDSSSDM(Oxidation (M))EK_		SVFDSSSDM(1)EK		SVFDSSSDM(96)EK	0	0	1		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.2587280273438	2	624.25845	1246.50235	0.2594	0.00016194	-0.09894	-6.1764E-05	0.16046	0.00010017	624.258443712125	27.044	1.0273	27.044	26.673	27.7	0					94	35	4	0	0	0	0.0010602	3	4515	4469;4515;4567		96.034	87.123	1	600050			46008	2429	26488	26489	56000;56001;56002	56001		298			-0.11104351537983348
SVFDSSSDMEK	11	Oxidation (M)	_SVFDSSSDM(Oxidation (M))EK_		SVFDSSSDM(1)EK		SVFDSSSDM(96)EK	0	0	1		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.2586059570312	2	624.25845	1246.50235	-0.054054	-3.3744E-05	0.27873	0.000174	0.22467	0.00014025	624.2586815042831	27.053	0.87819	27.032	26.65	27.528	-0.021412					89	30	4	0	0	0	0.0010602	3	4537	4485;4537;4587		96.034	78.921	1	667710			46009	2429	26488	26489	56003;56004;56005	56004		298			-0.11104351537983348
SVFDSSSDMEK	11	Oxidation (M)	_SVFDSSSDM(Oxidation (M))EK_		SVFDSSSDM(1)EK		SVFDSSSDM(87)EK	0	0	1		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.2587280273438	2	624.25845	1246.50235	0.18421	0.000115	0.085167	5.3166E-05	0.26938	0.00016816	624.2585500637582	27.054	0.93458	27.042	26.711	27.645	-0.011562					86	32	4	0	0	0	0.0017529	3	4527	4482;4527;4579		87.123	77.579	1	700310			46010	2429	26488	26489	56006;56007;56008	56007		298			-0.11104351537983348
SVFDTADYTF	10	Unmodified	_SVFDTADYTF_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.2564697265625	2	583.256037	1164.49752	0.22489	0.00013117	0.6544	0.00038168	0.87929	0.00051285	583.2563931123601	67.015	0.67537	67.099	66.877	67.552	0.083832					50	23	3	0	0	0	0.15638	1	16826	16826		37.974	12.575	1	380900			46011	1341	26489	26490	56009	56009					-0.07814867618435528
SVFDTADYTF	10	Unmodified	_SVFDTADYTF_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.2566528320312	2	583.256037	1164.49752	0.27657	0.00016131	-0.18338	-0.00010696	0.09319	5.4354E-05	583.2557444687064	71.275	1.0558	71.336	71.092	72.148	0.060783					74	37	3	0	0	0	0.15638	1	18091	18091		37.974	5.6685	1	818300			46012	1341	26489	26490	56010	56010					-0.07814867618435528
SVFDTADYTF	10	Unmodified	_SVFDTADYTF_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.7578125	2	583.256037	1164.49752	0.41747	0.00024349	0.23644	0.0001379	0.65391	0.0003814	583.2557643324263	71.435	1.4551	71.408	70.688	72.143	-0.027275					78	52	2	0	0	0	0.15638	1	18121	18121		37.974	5.1883	1	607800			46013	1341	26489	26490	56011	56011					-0.07814867618435528
SVFDTADYTF	10	Unmodified	_SVFDTADYTF_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	583.256037	1164.49752	0.26558	0.0001549	0.63449	0.00037007	0.90007	0.00052497	583.2564580907459	67.156	0.48869	67.156	66.937	67.425	0	0.022537	-0.0001123	NaN	37.974	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268140			46014	1341	26489	26490							-0.07814867618435528
SVFDTADYTF	10	Unmodified	_SVFDTADYTF_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	583.256037	1164.49752	0.14382	8.3883E-05	0.84433	0.00049246	0.98814	0.00057634	583.2563574702756	67.162	0.58566	67.145	66.893	67.478	-0.016296	0.011707	0.00013248	NaN	37.974	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	539270			46015	1341	26489	26490							-0.07814867618435528
SVFDYFEEY	9	Unmodified	_SVFDYFEEY_					0	0	0		ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3345947265625	2	599.750587	1197.48662	0.70756	0.00042436	-0.25508	-0.00015298	0.45249	0.00027138	599.7503852759054	84.725	0.3733	84.725	84.497	84.871	0					22	13	2	0	0	0	0.16284	1	22236	22236		37.974	17.559	1	121030			46016	4197	26490	26491	56012	56012					-0.10422269992682232
SVFDYFEEY	9	Unmodified	_SVFDYFEEY_					0	0	0		ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3342895507812	2	599.750587	1197.48662	0.74182	0.00044491	-0.69417	-0.00041633	0.047653	2.858E-05	599.7500723181325	84.583	0.38465	84.663	84.472	84.857	0.080887					21	14	2	0	0	0	0.21389	1	22158	22158		25.399	10.151	1	118460			46017	4197	26490	26491	56013	56013					-0.10422269992682232
SVFDYFEEY	9	Unmodified	_SVFDYFEEY_					0	0	0		ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	ENSG00000138792|ENST00000265162|ENPEP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3345947265625	2	599.750587	1197.48662	0.59347	0.00035594	-0.46824	-0.00028083	0.12523	7.5109E-05	599.7503684797073	84.754	0.40134	84.741	84.516	84.917	-0.01284					21	15	2	0	0	0	0.13898	1	22187	22187		43.858	23.444	1	133600			46018	4197	26490	26491	56014	56014					-0.10422269992682232
SVFEDPVISK	10	Unmodified	_SVFEDPVISK_					0	0	0		ENSG00000125445|ENST00000245539|MRPS7	ENSG00000125445|ENST00000245539|MRPS7	ENSG00000125445|ENST00000245539|MRPS7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.7991333007812	2	560.797872	1119.58119	0.54249	0.00030423	1.2135	0.0006805	1.7559	0.00098473	560.7983935585303	47.596	0.52147	47.596	47.328	47.849	0					54	18	4	0	0	0	0.018653	2	10831	10831;10846		73.196	38.264	1	2177600			46019	3205	26491	26492	56015;56016	56015					0.02618288549274439
SVFEDPVISK	10	Unmodified	_SVFEDPVISK_					0	0	0		ENSG00000125445|ENST00000245539|MRPS7	ENSG00000125445|ENST00000245539|MRPS7	ENSG00000125445|ENST00000245539|MRPS7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.7987670898438	2	560.797872	1119.58119	0.53945	0.00030252	1.4832	0.00083176	2.0226	0.0011343	560.7984777894035	47.518	0.51428	47.565	47.321	47.836	0.04752					51	18	3	0	0	0	0.058704	1	10826	10826		57.108	28.026	1	1914500			46020	3205	26491	26492	56017	56017					0.02618288549274439
SVFEDPVISK	10	Unmodified	_SVFEDPVISK_					0	0	0		ENSG00000125445|ENST00000245539|MRPS7	ENSG00000125445|ENST00000245539|MRPS7	ENSG00000125445|ENST00000245539|MRPS7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7987670898438	2	560.797872	1119.58119	0.62831	0.00035236	1.2604	0.00070682	1.8887	0.0010592	560.7982484902616	47.569	0.52665	47.613	47.323	47.85	0.04332					61	19	4	0	0	0	0.058704	1	10816	10816		57.108	32.117	1	1924200			46021	3205	26491	26492	56018	56018					0.02618288549274439
SVFELDYDYV	10	Unmodified	_SVFELDYDYV_					0	0	0		ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.21649169921875	3	417.192288	1248.55504	-0.2028	-8.4606E-05	-1.9861	-0.0008286	-2.1889	-0.0009132	417.5255051283507	18.711	0.4266	18.711	18.363	18.79	0					21	14	2	0	0	0	0.32123	1	1918	1918		0.69767	0	1	18447			46022	7173	26492	26493	56019	56019					-0.059300254128629604
SVFELDYDYV	10	Unmodified	_SVFELDYDYV_					0	0	0		ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	417.192288	1248.55504	0.010138	4.2294E-06	-1.7831	-0.00074389	-1.773	-0.00073966	417.1914080253322	18.822	0.39648	18.704	18.414	18.81	-0.11739	-0.0032537	0.00019869	NaN	0.69767	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30328			46023	7173	26492	26493							-0.059300254128629604
SVFELTFKR	9	Unmodified	_SVFELTFKR_					0	0	0		nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8164672851562	2	563.816399	1125.61824	0.32848	0.0001852	0.28345	0.00015982	0.61193	0.00034502	563.8163812180544	49.675	0.65521	49.675	49.321	49.976	0					77	23	4	0	0	0	0.001957	1	11440	11440		110.55	41.448	1	2207300			46024	5267	26493	26494	56020	56020					0.060460048857066795
SVFELTFKR	9	Unmodified	_SVFELTFKR_					0	0	0		nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8163452148438	2	563.816399	1125.61824	0.36456	0.00020554	0.18662	0.00010522	0.55118	0.00031076	563.8163533002262	49.658	0.79038	49.703	49.293	50.084	0.044891					89	29	4	0	0	0	0.0016712	1	11431	11431		114.2	42.279	1	2376700			46025	5267	26493	26494	56021	56021					0.060460048857066795
SVFELTFKR	9	Unmodified	_SVFELTFKR_					0	0	0		nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.8162841796875	2	563.816399	1125.61824	0.22653	0.00012772	0.44269	0.00024959	0.66922	0.00037732	563.8163758063407	49.661	1.0575	49.681	49.168	50.226	0.020691					99	38	4	0	0	0	3.6949E-07	1	11446	11446		165.72	46.826	1	2246700			46026	5267	26493	26494	56022	56022					0.060460048857066795
SVFESLIAKK	10	Unmodified	_SVFESLIAKK_					0	0	0		ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.819091796875	2	561.331882	1120.64921	0.083807	4.7044E-05	-0.39326	-0.00022075	-0.30945	-0.00017371	561.3317545176774	46.221	0.56944	46.221	45.945	46.514	0					41	20	3	0	0	0	0.093324	2	10387	10387;10439		49.527	27.99	1	1441400			46027	2602	26494	26495	56023;56024	56023					0.09371158199928686
SVFESLIAKK	10	Unmodified	_SVFESLIAKK_					0	0	0		ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.8189697265625	2	561.331882	1120.64921	0.07234	4.0607E-05	0.026301	1.4763E-05	0.098641	5.537E-05	561.3319072868072	45.999	0.48785	46.059	45.819	46.307	0.059837					33	17	3	0	0	0	0.014191	2	10360	10309;10360		78.06	57.607	1	1486900			46028	2602	26494	26495	56025;56026	56026					0.09371158199928686
SVFESLIAKK	10	Unmodified	_SVFESLIAKK_					0	0	0		ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.8193969726562	2	561.331882	1120.64921	0.34941	0.00019614	-0.43796	-0.00024584	-0.088544	-4.9703E-05	561.3316865363837	45.998	0.6122	46.063	45.782	46.394	0.065048					40	21	3	0	0	0	0.084702	2	10319	10319;10368		51.415	33.378	1	1265100			46029	2602	26494	26495	56027;56028	56027					0.09371158199928686
SVFGLYRLF	9	Unmodified	_SVFGLYRLF_					0	0	0		ENST00000515235.6_1_5:118788237-118827866:+|nuORF	ENST00000515235.6_1_5:118788237-118827866:+|nuORF	ENST00000515235.6_1_5:118788237-118827866:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.2770385742188	2	551.30821	1100.60187	0.38278	0.00021103	-1.298	-0.00071557	-0.91518	-0.00050454	551.308330150776	65.442	0.50031	65.442	65.268	65.768	0					26	17	2	0	0	0	0.22596	1	16413	16413		21.747	12.399	1	174350			46030	11423	26495	26496	56029	56029					0.05558923719604536
SVFGPTGNKTL	11	Unmodified	_SVFGPTGNKTL_					0	0	0		ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2877197265625	2	560.803488	1119.59242	0.8927	0.00050063	-1.7966	-0.0010075	-0.90389	-0.00050691	560.8027888110905	47.105	0.53327	47.16	46.908	47.442	0.054371					49	18	4	0	0	0	0.30814	1	10739	10739		13.615	0	1	631350			46031	1786	26496	26497	56030	56030					0.03741110643454704
SVFGSQVW	8	Unmodified	_SVFGSQVW_					0	0	0		ENST00000531484.5_1_11:65421851-65429483:-|nuORF;ENST00000532776.5_1_11:65429156-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.21173095703125	2	455.226885	908.439217	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.255	1	35.332	34.832	35.832	0.077377								0	0	0	0.34229	1	7033	7033		18.135	6.4947	1				46032	11626	26497	26498	56031	56031					-0.01866459682378263
SVFGTMPLK	9	Oxidation (M)	_SVFGTM(Oxidation (M))PLK_		SVFGTM(1)PLK		SVFGTM(100)PLK	0	0	1		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2652893066406	2	498.265153	994.515753	0.5573	0.00027768	-0.26361	-0.00013135	0.29369	0.00014633	498.2649527579405	40.391	0.71974	40.391	39.968	40.688	0					84	25	5	0	0	0	0.0028542	2	8614	8570;8614		103.42	44.741	1	5221300			46033	4955	26498	26499	56032;56033	56033		611			0.018275958226013245
SVFGTMPLK	9	Oxidation (M)	_SVFGTM(Oxidation (M))PLK_		SVFGTM(1)PLK		SVFGTM(93)PLK	0	0	1		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2652282714844	2	498.265153	994.515753	0.60934	0.00030361	-0.39147	-0.00019506	0.21786	0.00010855	498.26491977218393	40.209	0.67008	40.301	39.967	40.637	0.09267					85	23	5	0	0	0	0.0042138	1	8512	8512		92.653	35.182	1	5580300			46034	4955	26498	26499	56034	56034		611			0.018275958226013245
SVFGTMPLK	9	Oxidation (M)	_SVFGTM(Oxidation (M))PLK_		SVFGTM(1)PLK		SVFGTM(100)PLK	0	0	1		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.26519775390625	2	498.265153	994.515753	0.47776	0.00023805	-0.30249	-0.00015072	0.17527	8.7331E-05	498.26498678226096	40.166	0.6677	40.266	39.949	40.617	0.099407					89	23	5	0	0	0	0.0028542	2	8538	8495;8538		103.42	44.741	1	5535900			46035	4955	26498	26499	56035;56036	56036		611			0.018275958226013245
SVFHAQLAY	9	Unmodified	_SVFHAQLAY_					0	0	0		nc|ENSG00000068971|Q15173-2|PPP2R5B;ENSG00000068971|ENST00000164133|PPP2R5B	nc|ENSG00000068971|Q15173-2|PPP2R5B	nc|ENSG00000068971|Q15173-2|PPP2R5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8157958984375	2	518.266542	1034.51853	0.5046	0.00026152	-1.1189	-0.00057986	-0.61425	-0.00031834	518.266084316156	48.686	0.37637	48.686	48.48	48.856	0					21	13	2	0	0	0	0.22061	1	11129	11129		8.7454	0	1	358520			46036	895	26499	26500	56037	56037					0.002651872717478909
SVFHSESVN	9	Unmodified	_SVFHSESVN_					0	0	0			REV__chr5:135937547-135940489|376|12.59|0.47|4.75|+|0|FBXL21P,FBXL21P|1	REV__chr5:135937547-135940489|376|12.59|0.47|4.75|+|0|FBXL21P,FBXL21P|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7655334472656	2	503.235439	1004.45632	0.18079	9.0981E-05	2.9074	0.0014631	3.0882	0.0015541	503.23694727833725	23.459	0.46114	23.372	23.138	23.599	-0.087608					25	16	2	0	0	0	0.25323	1	3458	3458		10.074	0	1	84613	+		46037	13198	26500	26501	56038	56038					-0.045725838672410646
SVFIELLNS	9	Unmodified	_SVFIELLNS_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2695617675781	2	511.281857	1020.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.455	1	45.455	44.955	45.955	0								0	0	0	0.093871	1	10161	10161		47.749	1.7277	1				46038	5811	26501	26502	56039	56039					0.03970920866140659
SVFMQRLKTN	10	Unmodified	_SVFMQRLKTN_					0	0	0		ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	ENSG00000139687|ENST00000267163|RB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.556884765625	3	408.557019	1222.64923	0.13603	5.5574E-05	-0.32471	-0.00013266	-0.18868	-7.7089E-05	408.5568217196725	21.689	0.69958	21.589	21.244	21.943	-0.10034					57	24	3	0	0	0	0.38952	1	2934	2934		5.4027	2.6675	1	285320			46039	4258	26502	26503	56040	56040					0.04680834928308286
SVFNEHPSRR	10	Unmodified	_SVFNEHPSRR_					0	0	0		ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.54296875	3	410.210899	1227.61087	-0.15188	-6.2302E-05	-3.1575	-0.0012952	-3.3094	-0.0013575	410.5432525531206	17.976	1.0771	17.976	17.568	18.646	0					97	36	4	0	0	0	0.37823	1	1772	1772		7.4771	1.2427	1	166520			46040	8698	26503	26504	56041	56041					0.006166653379750642
SVFNEHPSRR	10	Unmodified	_SVFNEHPSRR_					0	0	0		ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.210693359375	3	410.210899	1227.61087	-0.066405	-2.724E-05	-3.3962	-0.0013932	-3.4626	-0.0014204	410.5430109196323	18.273	1.2864	18.155	17.603	18.89	-0.11739					99	44	4	0	0	0	0.32015	1	1848	1848		5.0475	1.1712	1	222480			46041	8698	26503	26504	56042	56042					0.006166653379750642
SVFNHAIRH	9	Unmodified	_SVFNHAIRH_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.788330078125	2	540.788507	1079.56246	0.49983	0.0002703	-0.95624	-0.00051712	-0.45641	-0.00024682	540.7880553408236	21.516	0.88767	21.516	21.052	21.94	0					51	24	3	0	0	0	0.0054984	1	2872	2872		86.332	62.311	1	360200			46042	8708	26504	26505	56043	56043					0.02586216488748505
SVFNHAIRH	9	Unmodified	_SVFNHAIRH_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7883911132812	2	540.788507	1079.56246	0.5867	0.00031728	-1.0957	-0.00059257	-0.50905	-0.00027529	540.7879642848786	21.643	0.61267	21.542	21.275	21.888	-0.10034					51	21	4	0	0	0	0.0033458	1	2909	2909		110.67	74.631	1	409760			46043	8708	26504	26505	56044	56044					0.02586216488748505
SVFNHAIRH	9	Unmodified	_SVFNHAIRH_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	540.788507	1079.56246	0.53396	0.00028876	-1.3627	-0.00073692	-0.82871	-0.00044816	540.7878776194727	21.591	0.74013	21.541	21.265	22.005	-0.049377	0.0081835	-0.00026225	NaN	110.67	52	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363690			46044	8708	26504	26505							0.02586216488748505
SVFNLYAAV	9	Unmodified	_SVFNLYAAV_					0	0	0			REV__nc|ENSG00000132294|Q14156-3|EFR3A	REV__nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.81744384765625	2	492.263468	982.512382	0.46642	0.0002296	0.32024	0.00015764	0.78666	0.00038724	492.2634034252435	64.816	0.13887	64.908	64.798	64.937	0.09288					6	4	2	0	0	0	0.2451	1	16114	16114		15.847	6.4997	1	111910	+		46045	15556	26505	26506	56045	56045					0.020426690402246095
SVFQKQFYRL	10	Unmodified	_SVFQKQFYRL_					0	0	0		LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant;ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF;LYST|p.H1457Ifs*42|1|0.05|ENSG00000143669|chr1:235791873-235791874|-/AT|frameshift_variant;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF;LYST|p.A1574Sfs*8|1|0.25|ENSG00000143669|chr1:235787342-235787343|-/T|frameshift_variant;LYST|p.F1726Lfs*2|1|0.35|ENSG00000143669|chr1:235780901-235780901|A/-|frameshift_variant	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.24334716796875	3	439.243429	1314.70846	0.18877	8.2915E-05	-0.42654	-0.00018736	-0.23778	-0.00010444	439.24330655136436	49.018	0.60725	49.018	48.827	49.434	0					55	21	4	0	0	0	0.099967	1	11263	11263		48.073	35.845	1	985480			46046	4540	26506	26507	56046	56046					0.0636905421413303
SVFQKQFYRL	10	Unmodified	_SVFQKQFYRL_					0	0	0		LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant;ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF;LYST|p.H1457Ifs*42|1|0.05|ENSG00000143669|chr1:235791873-235791874|-/AT|frameshift_variant;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF;LYST|p.A1574Sfs*8|1|0.25|ENSG00000143669|chr1:235787342-235787343|-/T|frameshift_variant;LYST|p.F1726Lfs*2|1|0.35|ENSG00000143669|chr1:235780901-235780901|A/-|frameshift_variant	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.57781982421875	3	439.243429	1314.70846	-0.041443	-1.8203E-05	-0.018931	-8.3153E-06	-0.060374	-2.6519E-05	439.2434855484383	48.954	0.72577	48.986	48.743	49.468	0.032043					59	25	3	0	0	0	0.11678	1	11254	11254		44.392	30.873	1	864430			46047	4540	26506	26507	56047	56047					0.0636905421413303
SVFQKQFYRL	10	Unmodified	_SVFQKQFYRL_					0	0	0		LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant;ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF;LYST|p.H1457Ifs*42|1|0.05|ENSG00000143669|chr1:235791873-235791874|-/AT|frameshift_variant;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF;LYST|p.A1574Sfs*8|1|0.25|ENSG00000143669|chr1:235787342-235787343|-/T|frameshift_variant;LYST|p.F1726Lfs*2|1|0.35|ENSG00000143669|chr1:235780901-235780901|A/-|frameshift_variant	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	439.243429	1314.70846	0.055564	2.4406E-05	-0.40487	-0.00017784	-0.3493	-0.00015343	439.2432196660083	49.112	0.71463	49.157	48.878	49.593	0.044891	0.10298	-9.9458E-05	NaN	48.073	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	884860			46048	4540	26506	26507							0.0636905421413303
SVFQQGMKNK	10	Oxidation (M)	_SVFQQGM(Oxidation (M))KNK_		SVFQQGM(1)KNK		SVFQQGM(56)KNK	0	0	1		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;ENST00000479960.1_1_1:116943772-116944278:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.80078125	2	591.800423	1181.58629	0.15866	9.3896E-05	0.14937	8.8398E-05	0.30803	0.00018229	591.8005113223892	15.426	0.63508	15.426	15.207	15.842	0					52	21	3	0	0	0	0.066034	1	1009	1009		55.503	38.06	1	524870			46049	5675	26507	26508	56048	56048		677			0.0027626914024949656
SVFQQGMKNK	10	Oxidation (M)	_SVFQQGM(Oxidation (M))KNK_		SVFQQGM(1)KNK		SVFQQGM(57)KNK	0	0	1		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;ENST00000479960.1_1_1:116943772-116944278:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.8006591796875	2	591.800423	1181.58629	0.19186	0.00011354	0.12143	7.1864E-05	0.31329	0.00018541	591.8004620717886	15.584	0.64025	15.474	15.176	15.816	-0.10981					52	21	3	0	0	0	0.058058	1	1047	1047		57.249	29.62	1	519250			46050	5675	26507	26508	56049	56049		677			0.0027626914024949656
SVFQQGMKNK	10	Oxidation (M)	_SVFQQGM(Oxidation (M))KNK_		SVFQQGM(1)KNK		SVFQQGM(63)KNK	0	0	1		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;ENST00000479960.1_1_1:116943772-116944278:+|nuORF	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.8005981445312	2	591.800423	1181.58629	0.13038	7.7157E-05	0.19198	0.00011361	0.32236	0.00019077	591.800532067608	15.516	0.55876	15.452	15.247	15.806	-0.064413					46	18	3	0	0	0	0.030754	1	1040	1040		63.227	45.081	1	582870			46051	5675	26507	26508	56050	56050		677			0.0027626914024949656
SVFQTTDTK	9	Unmodified	_SVFQTTDTK_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;chr4:140343469-140343621|495|16.66|0.78|4.42|+|ENST00000338517|SCOC,SCOC;nc|ENSG00000153130|Q9UIL1-4|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7586059570312	2	513.758746	1025.50294	0.17345	8.911E-05	-0.032555	-1.6725E-05	0.14089	7.2385E-05	513.7586562250618	25.65	0.91885	25.65	25.296	26.215	0					75	31	4	0	0	0	0.0018978	2	4121	4121;4166		111.31	75.182	1	1117100			46052	162	26508	26509	56051;56052	56051					-0.008791440359800617
SVFQTTDTK	9	Unmodified	_SVFQTTDTK_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;chr4:140343469-140343621|495|16.66|0.78|4.42|+|ENST00000338517|SCOC,SCOC;nc|ENSG00000153130|Q9UIL1-4|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7586669921875	2	513.758746	1025.50294	-0.028131	-1.4453E-05	0.23018	0.00011826	0.20205	0.0001038	513.7588211531522	25.657	0.90532	25.601	25.341	26.246	-0.055677					74	31	3	0	0	0	0.0010993	2	4142	4142;4187		121.5	83.328	1	1218200			46053	162	26508	26509	56053;56054	56053					-0.008791440359800617
SVFQTTDTK	9	Unmodified	_SVFQTTDTK_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;chr4:140343469-140343621|495|16.66|0.78|4.42|+|ENST00000338517|SCOC,SCOC;nc|ENSG00000153130|Q9UIL1-4|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7586059570312	2	513.758746	1025.50294	-0.023682	-1.2167E-05	0.26388	0.00013557	0.2402	0.0001234	513.7587394585047	25.698	0.94041	25.675	25.388	26.328	-0.022238					76	33	4	0	0	0	0.0018978	3	4131	4131;4173;4241		111.31	75.182	1	1201200			46054	162	26508	26509	56055;56056;56057	56055					-0.008791440359800617
SVFQTTDTKSK	11	Unmodified	_SVFQTTDTKSK_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;chr4:140343469-140343621|495|16.66|0.78|4.42|+|ENST00000338517|SCOC,SCOC;nc|ENSG00000153130|Q9UIL1-4|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.8238525390625	2	621.322242	1240.62993	-0.0096241	-5.9796E-06	0.24952	0.00015503	0.2399	0.00014905	621.3223207942495	19.403	0.48616	19.287	19.058	19.544	-0.11592					27	16	2	0	0	0	0.45051	2	2196	2196;2242		8.4443	6.6001	1	74706			46055	162	26509	26510	56058;56059	56058					0.019241571183329143
SVFQTTDTKSK	11	Unmodified	_SVFQTTDTKSK_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;chr4:140343469-140343621|495|16.66|0.78|4.42|+|ENST00000338517|SCOC,SCOC;nc|ENSG00000153130|Q9UIL1-4|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.3220825195312	2	621.322242	1240.62993	0.10031	6.2323E-05	-0.27295	-0.00016959	-0.17264	-0.00010727	621.3220948402056	19.264	0.52232	19.209	19.048	19.571	-0.055691					35	17	3	0	0	0	0.43755	1	2206	2206		10.899	5.1671	1	76308			46056	162	26509	26510	56060	56060					0.019241571183329143
SVFQTTDTKSK	11	Unmodified	_SVFQTTDTKSK_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;chr4:140343469-140343621|495|16.66|0.78|4.42|+|ENST00000338517|SCOC,SCOC;nc|ENSG00000153130|Q9UIL1-4|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	621.322242	1240.62993	0.07299	4.5351E-05	0.028195	1.7518E-05	0.10119	6.2869E-05	621.3222266546013	19.143	0.5428	19.143	18.978	19.521	0	-0.0697	3.1457E-05	NaN	10.899	35	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78420			46057	162	26509	26510							0.019241571183329143
SVFSKYFER	9	Unmodified	_SVFSKYFER_					0	0	0		nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI	nc|ENSG00000107201|O95786-2|RIGI	nc|ENSG00000107201|O95786-2|RIGI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.7984619140625	2	581.798206	1161.58186	0.59521	0.00034629	0.049761	2.8951E-05	0.64497	0.00037524	581.7981226668196	47.163	0.98477	47.163	46.813	47.797	0					109	34	4	0	0	0	2.5334E-11	3	10710	10665;10710;10762		195.04	149.34	1	5332000			46058	2117	26510	26511	56061;56062;56063	56062					0.007531279889917641
SVFSKYFER	9	Unmodified	_SVFSKYFER_					0	0	0		nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI	nc|ENSG00000107201|O95786-2|RIGI	nc|ENSG00000107201|O95786-2|RIGI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7987670898438	2	581.798206	1161.58186	0.38158	0.000222	0.67059	0.00039015	1.0522	0.00061215	581.7984014500096	46.874	1.1199	46.926	46.554	47.674	0.052574					121	41	4	0	0	0	2.5334E-11	3	10595	10548;10595;10635		195.04	141.21	1	5169200			46059	2117	26510	26511	56064;56065;56066	56065					0.007531279889917641
SVFSKYFER	9	Unmodified	_SVFSKYFER_					0	0	0		nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI	nc|ENSG00000107201|O95786-2|RIGI	nc|ENSG00000107201|O95786-2|RIGI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.7987670898438	2	581.798206	1161.58186	0.66069	0.00038439	0.3532	0.00020549	1.0139	0.00058988	581.7982449875044	46.836	0.86037	46.89	46.631	47.491	0.054375					105	30	4	0	0	0	6.4322E-11	4	10588	10545;10588;10636;10691		182.24	134.49	1	4796300			46060	2117	26510	26511	56067;56068;56069;56070	56068					0.007531279889917641
SVFSSMIISE	10	Unmodified	_SVFSSMIISE_					0	0	0			REV__ENSG00000123338|ENST00000293373|NCKAP1L	REV__ENSG00000123338|ENST00000293373|NCKAP1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2799682617188	2	550.270632	1098.52671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.07	1	40.17	39.67	40.67	0.099407								0	0	0	0.27706	1	8505	8505		30.637	6.616	1		+		46061	15185	26511	26512	56071	56071					-0.01861046593762694
SVFTNERFPLR	11	Unmodified	_SVFTNERFPLR_					0	0	0		ENST00000463307.5_1_7:73107559-73112213:+|nuORF;ENST00000436944.5_1_7:73101164-73117856:+|nuORF;ENSG00000071462|ENST00000265758|BUD23	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.91424560546875	3	455.913971	1364.72008	0.36807	0.00016781	-0.58394	-0.00026623	-0.21588	-9.8421E-05	456.24797167131845	48.096	0.62331	48.096	47.959	48.582	0					49	21	3	0	0	0	0.37764	1	10974	10974		14.171	7.5473	1	1112300			46062	957	26512	26513	56072	56072					0.05231251237478318
SVFTNERFPLR	11	Unmodified	_SVFTNERFPLR_					0	0	0		ENST00000463307.5_1_7:73107559-73112213:+|nuORF;ENST00000436944.5_1_7:73101164-73117856:+|nuORF;ENSG00000071462|ENST00000265758|BUD23	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.91400146484375	3	455.913971	1364.72008	0.55505	0.00025305	-0.31137	-0.00014196	0.24368	0.0001111	456.2480892818187	48.094	0.57943	48.142	47.994	48.573	0.04752					57	21	4	0	0	0	0.37255	1	10992	10992		14.838	6.0861	1	987080			46063	957	26512	26513	56073	56073					0.05231251237478318
SVFTNERFPLR	11	Unmodified	_SVFTNERFPLR_					0	0	0		ENST00000463307.5_1_7:73107559-73112213:+|nuORF;ENST00000436944.5_1_7:73101164-73117856:+|nuORF;ENSG00000071462|ENST00000265758|BUD23	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.9137878417969	3	455.913971	1364.72008	0.38356	0.00017487	-0.08145	-3.7134E-05	0.30211	0.00013774	455.9138598102005	48.07	0.66119	48.113	47.926	48.588	0.043324					63	24	4	0	0	0	0.37255	1	10958	10958		14.838	6.0861	1	1272400			46064	957	26512	26513	56074	56074					0.05231251237478318
SVFTPRVN	8	Unmodified	_SVFTPRVN_					0	0	0			REV__nc|ENSG00000169894|Q02505-2|MUC3A	REV__nc|ENSG00000169894|Q02505-2|MUC3A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.2540588378906	2	460.253434	918.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.042	1	37.135	36.635	37.635	0.093018								0	0	0	0.37078	1	7580	7580		5.2307	0.47466	1		+		46065	17549	26513	26514	56075	56075					0.029809181002860896
SVFTSTIVAK	10	Unmodified	_SVFTSTIVAK_					0	0	0		nc|ENSG00000168065|Q9NSA0-2|SLC22A11;chr11:64568778-64570979|459|20.1|0.81|4.63|+|ENST00000377581|SLC22A11,SLC22A11;ENSG00000168065|ENST00000301891|SLC22A11	nc|ENSG00000168065|Q9NSA0-2|SLC22A11	nc|ENSG00000168065|Q9NSA0-2|SLC22A11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.8032836914062	2	526.802957	1051.59136	0.73893	0.00038927	-0.26645	-0.00014037	0.47248	0.0002489	526.8026322503147	44.593	0.88139	44.593	44.357	45.238	0					65	31	4	0	0	0	0.0046086	1	9930	9930		93.938	61.152	1	1813800			46066	128	26514	26515	56076	56076					0.06762896274517516
SVFTSTIVAK	10	Unmodified	_SVFTSTIVAK_					0	0	0		nc|ENSG00000168065|Q9NSA0-2|SLC22A11;chr11:64568778-64570979|459|20.1|0.81|4.63|+|ENST00000377581|SLC22A11,SLC22A11;ENSG00000168065|ENST00000301891|SLC22A11	nc|ENSG00000168065|Q9NSA0-2|SLC22A11	nc|ENSG00000168065|Q9NSA0-2|SLC22A11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8034057617188	2	526.802957	1051.59136	0.63552	0.00033479	-0.015303	-8.0619E-06	0.62022	0.00032673	526.8028026118656	44.467	0.90606	44.536	44.298	45.204	0.068573					75	32	4	0	0	0	0.0082636	2	9882	9834;9882		84.522	57.639	1	1894400			46067	128	26514	26515	56077;56078	56078					0.06762896274517516
SVFTSTIVAK	10	Unmodified	_SVFTSTIVAK_					0	0	0		nc|ENSG00000168065|Q9NSA0-2|SLC22A11;chr11:64568778-64570979|459|20.1|0.81|4.63|+|ENST00000377581|SLC22A11,SLC22A11;ENSG00000168065|ENST00000301891|SLC22A11	nc|ENSG00000168065|Q9NSA0-2|SLC22A11	nc|ENSG00000168065|Q9NSA0-2|SLC22A11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8033447265625	2	526.802957	1051.59136	0.60729	0.00031992	0.052943	2.7891E-05	0.66023	0.00034781	526.8028440657652	44.469	0.73061	44.544	44.285	45.016	0.075047					65	26	3	0	0	0	0.0046086	1	9829	9829		93.938	61.152	1	2056300			46068	128	26514	26515	56079	56079					0.06762896274517516
SVFTSVRQK	9	Unmodified	_SVFTSVRQK_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2981567382812	2	526.298373	1050.58219	0.34123	0.00017959	-0.17629	-9.2782E-05	0.16493	8.6805E-05	526.2982169641693	23.562	0.57918	23.562	23.308	23.887	0					46	19	3	0	0	0	0.0054984	2	3464	3464;3506		86.332	60.064	1	538620			46069	12692	26515	26516	56080;56081	56080					0.058925477088678235
SVFTSVRQK	9	Unmodified	_SVFTSVRQK_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.298583984375	2	526.298373	1050.58219	0.35911	0.000189	-0.14712	-7.743E-05	0.21199	0.00011157	526.2982083532194	23.707	0.65783	23.635	23.34	23.997	-0.072559					53	22	3	0	0	0	0.0073901	1	3547	3547		83.429	54.347	1	532890			46070	12692	26515	26516	56082	56082					0.058925477088678235
SVFTSVRQK	9	Unmodified	_SVFTSVRQK_					0	0	0		nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF;ENST00000592604.5_1_19:11123597-11172489:+|nuORF	nc|ENSG00000127616|P51532-5|SMARCA4	nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.29833984375	2	526.298373	1050.58219	0.57649	0.00030341	-0.38699	-0.00020367	0.1895	9.9735E-05	526.2980410304368	23.714	0.65865	23.676	23.391	24.049	-0.038927					57	22	4	0	0	0	0.0037449	1	3545	3545		96.367	63.581	1	463500			46071	12692	26515	26516	56083	56083					0.058925477088678235
SVFVATFLR	9	Unmodified	_SVFVATFLR_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3007202148438	2	520.300384	1038.58622	0.6428	0.00033445	-0.12405	-6.4545E-05	0.51875	0.00026991	520.3003100751783	64.011	1.1995	64.011	63.607	64.807	0					148	43	6	0	0	0	7.3453E-05	4	15889	15841;15889;15939;15989		145.13	80.784	1	9627500			46072	1476	26516	26517	56084;56085;56086;56087	56085					0.06846637202534112
SVFVATFLR	9	Unmodified	_SVFVATFLR_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3006591796875	2	520.300384	1038.58622	0.51219	0.00026649	-0.030972	-1.6115E-05	0.48121	0.00025038	520.3003472790982	63.888	1.4093	63.981	63.413	64.822	0.09288					175	50	7	0	0	0	7.3453E-05	4	15841	15792;15841;15889;15936		145.13	72.978	1	9774400			46073	1476	26516	26517	56088;56089;56090;56091	56089					0.06846637202534112
SVFVATFLR	9	Unmodified	_SVFVATFLR_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3005981445312	2	520.300384	1038.58622	0.5823	0.00030297	-0.091523	-4.7619E-05	0.49078	0.00025535	520.3003291188905	64.014	1.3773	64.005	63.434	64.811	-0.0095291					164	49	6	0	0	0	7.3453E-05	4	15830	15830;15876;15919;15973		145.13	92.861	1	10292000			46074	1476	26516	26517	56092;56093;56094;56095	56092					0.06846637202534112
SVFVRCDEERL	11	Unmodified	_SVFVRCDEERL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.8885498046875	3	451.559088	1351.65543	0.15586	7.0378E-05	0.057991	2.6187E-05	0.21385	9.6564E-05	451.55880034393897	42.893	0.8946	42.893	42.624	43.519	0					72	32	4	0	0	0	0.3322	1	9513	9513		4.7159	3.5011	1	835970			46075	2674	26517	26518	56096	56096					-0.006326916308353248
SVFYEDNWAP	10	Unmodified	_SVFYEDNWAP_					0	0	0		ENST00000480421.5_1_7:142982055-142983919:+|nuORF;ENSG00000178826|ENST00000359333|TMEM139	ENST00000480421.5_1_7:142982055-142983919:+|nuORF	ENST00000480421.5_1_7:142982055-142983919:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.21087646484375	3	409.848744	1226.5244	-0.17374	-7.1208E-05	0.51823	0.0002124	0.34449	0.00014119	409.84924692416627	18.222	0.1403	18.164	18.087	18.227	-0.058174					6	4	2	0	0	0	0.32123	1	1842	1842		0.69767	0	1	14151			46076	7078	26518	26519	56097	56097					-0.07979759007230314
SVFYGAPSK	9	Unmodified	_SVFYGAPSK_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.24786376953125	2	478.247818	954.481082	0.093536	4.4733E-05	-0.2163	-0.00010344	-0.12276	-5.871E-05	478.24753498378055	33.308	0.60888	33.308	33.065	33.674	0					50	21	3	0	0	0	0.069258	1	6462	6462		45.74	17.253	1	581520			46077	8441	26519	26520	56098	56098					0.002020960061486221
SVFYGAPSK	9	Unmodified	_SVFYGAPSK_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.247802734375	2	478.247818	954.481082	0.24301	0.00011622	-0.53492	-0.00025582	-0.29191	-0.00013961	478.24743839093463	33.194	0.60877	33.249	32.946	33.555	0.055309					54	21	3	0	0	0	0.09758	1	6390	6390		38.615	16.868	1	647610			46078	8441	26519	26520	56099	56099					0.002020960061486221
SVFYGAPSK	9	Unmodified	_SVFYGAPSK_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.8083190917969	2	478.247818	954.481082	0.13815	6.607E-05	-0.10954	-5.2386E-05	0.028614	1.3685E-05	478.24761336827686	33.196	0.60936	33.25	32.985	33.594	0.054371					50	21	3	0	0	0	0.23216	1	6503	6503		22.658	1.1211	1	719830			46079	8441	26519	26520	56100	56100					0.002020960061486221
SVGDIGKVA	9	Unmodified	_SVGDIGKVA_					0	0	0			REV__nc|ENSG00000196290|Q9GZT8-3|NIF3L1	REV__nc|ENSG00000196290|Q9GZT8-3|NIF3L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.2392883300781	2	423.239993	844.465432	0.10925	4.6241E-05	-0.75389	-0.00031908	-0.64464	-0.00027284	423.2395479443967	21.083	0.93455	21.03	20.723	21.658	-0.052912					71	32	3	0	0	0	0.31417	1	2797	2797		6.7232	1.9672	1	261750	+		46080	18639	26520	26521	56101	56101					0.03697809489096926
SVGDIGKVA	9	Unmodified	_SVGDIGKVA_					0	0	0			REV__nc|ENSG00000196290|Q9GZT8-3|NIF3L1	REV__nc|ENSG00000196290|Q9GZT8-3|NIF3L1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	423.239993	844.465432	0.10925	4.6241E-05	-0.75389	-0.00031908	-0.64464	-0.00027284	423.2395479443967	21.083	0.93455	21.03	20.723	21.658	-0.052912	-0.0034747	-5.557E-05	NaN	6.7232	71	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261750	+		46081	18639	26520	26521							0.03697809489096926
SVGDLAELLY	10	Unmodified	_SVGDLAELLY_					0	0	0		nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-13|CFLAR;nc|ENSG00000003402|O15519-2|CFLAR;nc|ENSG00000003402|O15519-9|CFLAR;nc|ENSG00000003402|O15519-12|CFLAR;nc|ENSG00000003402|O15519-14|CFLAR;nc|ENSG00000003402|O15519-6|CFLAR;nc|ENSG00000003402|O15519-5|CFLAR;nc|ENSG00000003402|O15519-11|CFLAR;nc|ENSG00000003402|O15519-10|CFLAR	nc|ENSG00000003402|O15519-8|CFLAR;nc|ENSG00000003402|O15519-10|CFLAR	nc|ENSG00000003402|O15519-8|CFLAR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.832763671875	2	540.284597	1078.55464	0.70017	0.00037829	-0.1921	-0.00010379	0.50808	0.00027451	540.2845288882933	84.912	0.61932	84.912	84.663	85.282	0					41	23	2	0	0	0	0.23848	1	22318	22318		37.974	5.6685	1	488210			46082	303;12554	26521	26522	56102	56102					0.01850599657973362
SVGDLAELLY	10	Unmodified	_SVGDLAELLY_					0	0	0		nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-13|CFLAR;nc|ENSG00000003402|O15519-2|CFLAR;nc|ENSG00000003402|O15519-9|CFLAR;nc|ENSG00000003402|O15519-12|CFLAR;nc|ENSG00000003402|O15519-14|CFLAR;nc|ENSG00000003402|O15519-6|CFLAR;nc|ENSG00000003402|O15519-5|CFLAR;nc|ENSG00000003402|O15519-11|CFLAR;nc|ENSG00000003402|O15519-10|CFLAR	nc|ENSG00000003402|O15519-8|CFLAR;nc|ENSG00000003402|O15519-10|CFLAR	nc|ENSG00000003402|O15519-8|CFLAR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8329467773438	2	540.284597	1078.55464	0.69447	0.00037521	-0.28502	-0.00015399	0.40945	0.00022122	540.2844985694098	84.859	0.65867	84.94	84.649	85.308	0.080887					52	25	3	0	0	0	0.23848	1	22241	22241		37.974	11.09	1	452720			46083	303;12554	26521	26522	56103	56103					0.01850599657973362
SVGDLAELLY	10	Unmodified	_SVGDLAELLY_					0	0	0		nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-13|CFLAR;nc|ENSG00000003402|O15519-2|CFLAR;nc|ENSG00000003402|O15519-9|CFLAR;nc|ENSG00000003402|O15519-12|CFLAR;nc|ENSG00000003402|O15519-14|CFLAR;nc|ENSG00000003402|O15519-6|CFLAR;nc|ENSG00000003402|O15519-5|CFLAR;nc|ENSG00000003402|O15519-11|CFLAR;nc|ENSG00000003402|O15519-10|CFLAR	nc|ENSG00000003402|O15519-8|CFLAR;nc|ENSG00000003402|O15519-10|CFLAR	nc|ENSG00000003402|O15519-8|CFLAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2843017578125	2	540.284597	1078.55464	0.75334	0.00040702	-0.45642	-0.0002466	0.29692	0.00016042	540.2843588193057	84.937	0.56409	84.924	84.656	85.221	-0.01284					50	22	3	0	0	0	0.21644	1	22321	22321		30.637	8.8899	1	379380			46084	303;12554	26521	26522	56104	56104					0.01850599657973362
SVGEITGHNK	10	Unmodified	_SVGEITGHNK_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;WDR1|p.I301Tfs*26|1|0.29|ENSG00000071127|chr4:10087756-10087756|A/-|frameshift_variant	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2695922851562	2	521.269813	1040.52507	0.10803	5.6314E-05	-2.8855	-0.0015041	-2.7775	-0.0014478	521.2706205728288	15.276	0.50359	15.212	15.013	15.517	-0.064413					40	16	4	0	0	0	0.31681	1	981	981		18.373	7.5492	1	117340			46085	952	26522	26523	56105	56105					0.006430804324736528
SVGEITGHNK	10	Unmodified	_SVGEITGHNK_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;WDR1|p.I301Tfs*26|1|0.29|ENSG00000071127|chr4:10087756-10087756|A/-|frameshift_variant	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.269813	1040.52507	0.15438	8.0473E-05	-3.7763	-0.0019685	-3.6219	-0.001888	521.269835602297	15.11	0.42377	15.11	14.925	15.348	0	-0.04548	-0.00028398	NaN	18.373	38	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88529			46086	952	26522	26523							0.006430804324736528
SVGEWLRAI	9	Unmodified	_SVGEWLRAI_					0	0	0		ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000196411|ENST00000358173|EPHB4	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	ENST00000487222.5_1_7:100401085-100421908:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.3099975585938	2	515.787641	1029.56073	0.36316	0.00018731	0.49643	0.00025605	0.85959	0.00044337	515.7878364865938	54.17	1.296	54.154	53.525	54.821	-0.015923					103	46	3	0	0	0	0.1854	1	12765	12765		25.399	4.9457	1	1127000			46087	7859	26523	26524	56106	56106					0.047131626801501625
SVGIFPYVLK	10	Unmodified	_SVGIFPYVLK_					0	0	0		nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR;ENST00000574767.5_1_17:78681670-78831736:+|nuORF;ENST00000577161.5_1_17:78519375-78883449:+|nuORF	nc|ENSG00000141564|Q8N122-3|RPTOR	nc|ENSG00000141564|Q8N122-3|RPTOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7852172851562	2	561.831517	1121.64848	0.29104	0.00016352	-0.014504	-8.149E-06	0.27654	0.00015537	561.831494165368	67.803	0.45587	67.803	67.592	68.048	0					34	15	3	0	0	0	0.28569	1	17055	17055		26.268	16.885	1	332110			46088	4395	26524	26525	56107	56107					0.09252363550876908
SVGIFPYVLK	10	Unmodified	_SVGIFPYVLK_					0	0	0		nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR;ENST00000574767.5_1_17:78681670-78831736:+|nuORF;ENST00000577161.5_1_17:78519375-78883449:+|nuORF	nc|ENSG00000141564|Q8N122-3|RPTOR	nc|ENSG00000141564|Q8N122-3|RPTOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7847290039062	2	561.831517	1121.64848	0.2149	0.00012074	-0.11071	-6.2199E-05	0.10419	5.8537E-05	561.8313223986592	67.8	0.42393	67.784	67.593	68.017	-0.016296					27	14	3	0	0	0	0.24359	1	17048	17048		38.176	23.337	1	284850			46089	4395	26524	26525	56108	56108					0.09252363550876908
SVGIFPYVLK	10	Unmodified	_SVGIFPYVLK_					0	0	0		nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR;ENST00000574767.5_1_17:78681670-78831736:+|nuORF;ENST00000577161.5_1_17:78519375-78883449:+|nuORF	nc|ENSG00000141564|Q8N122-3|RPTOR	nc|ENSG00000141564|Q8N122-3|RPTOR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.831517	1121.64848	0.52325	0.00029398	-0.76621	-0.00043048	-0.24296	-0.0001365	561.8311088011753	67.747	0.45332	67.826	67.546	68	0.078049	0.021577	-0.0006035	NaN	38.176	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248580			46090	4395	26524	26525							0.09252363550876908
SVGKMGMYELF	11	Unmodified	_SVGKMGMYELF_					0	0	0			REV__ENST00000447818.2_1_X:79828255-79829731:-|nuORF	REV__ENST00000447818.2_1_X:79828255-79829731:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.17596435546875	3	421.203365	1260.58827	-1.5489	-0.00065241	-2.2355	-0.00094158	-3.7844	-0.001594	421.20234298504096	34.914	0.44212	34.914	34.646	35.088	0					19	15	2	0	0	0	0.33094	1	6906	6906		7.4771	0.84669	1	88717	+		46091	16851	26525	26526	56109	56109					-0.03160438166150925
SVGKMGMYELF	11	Unmodified	_SVGKMGMYELF_					0	0	0			REV__ENST00000447818.2_1_X:79828255-79829731:-|nuORF	REV__ENST00000447818.2_1_X:79828255-79829731:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	421.203365	1260.58827	-1.662	-0.00070002	-2.3411	-0.00098609	-4.0031	-0.0016861	421.2022687052736	34.789	0.41236	34.864	34.604	35.017	0.075306	0.0065121	0.00017069	NaN	7.4771	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94478	+		46092	16851	26525	26526							-0.03160438166150925
SVGKMGMYELF	11	Unmodified	_SVGKMGMYELF_					0	0	0			REV__ENST00000447818.2_1_X:79828255-79829731:-|nuORF	REV__ENST00000447818.2_1_X:79828255-79829731:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	421.203365	1260.58827	-0.7722	-0.00032525	-2.9096	-0.0012255	-3.6818	-0.0015508	421.2021290155547	34.718	0.27251	34.796	34.675	34.947	0.077377	-0.062295	-0.00054761	NaN	7.4771	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73849	+		46093	16851	26525	26526							-0.03160438166150925
SVGKVLLALK	10	Unmodified	_SVGKVLLALK_					0	0	0		ENST00000507834.3_1_4:86167663-86168062:+|nuORF	ENST00000507834.3_1_4:86167663-86168062:+|nuORF	ENST00000507834.3_1_4:86167663-86168062:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8098754882812	2	514.347335	1026.68012	0.41007	0.00021092	0.12812	6.5899E-05	0.53819	0.00027682	514.3474323143435	43.344	0.3074	43.422	43.291	43.599	0.077518					15	10	2	0	0	0	0.31515	1	9521	9521		12.241	5.5175	1	177390			46094	11342	26526	26527	56110	56110					0.16784356304833636
SVGLFFLTQ	9	Unmodified	_SVGLFFLTQ_					0	0	0			REV__STT3B|p.E348D|1|0.16|ENSG00000163527|chr3:31616996-31616996|G/C|missense_variant	REV__STT3B|p.E348D|1|0.16|ENSG00000163527|chr3:31616996-31616996|G/C|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.29718017578125	2	506.279118	1010.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.856	1	61.847	61.347	62.347	-0.0085526								0	0	0	0.21009	1	15215	15215		19.257	1.122	1		+		46095	17065	26527	26528	56111	56111					0.03883242074334703
SVGLRLSWT	9	Unmodified	_SVGLRLSWT_					0	0	0			REV__ENST00000586972.1_1_17:40266182-40266371:-|nuORF	REV__ENST00000586972.1_1_17:40266182-40266371:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8059997558594	2	509.787641	1017.56073	0.76199	0.00038845	-0.69345	-0.00035351	0.068538	3.494E-05	509.7874413715597	50.788	0.37813	50.788	50.544	50.922	0					20	13	2	0	0	0	0.24311	1	11739	11739		16.942	5.302	1	169740	+		46096	22527	26528	26529	56112	56112					0.05265162680132107
SVGPLGHLP	9	Unmodified	_SVGPLGHLP_					0	0	0		ENST00000255198.2_2_5:76373098-76373719:-|nuORF	ENST00000255198.2_2_5:76373098-76373719:-|nuORF	ENST00000255198.2_2_5:76373098-76373719:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.2786560058594	2	438.750527	875.486502	-0.35599	-0.00015619	0.37077	0.00016268	0.014783	6.4862E-06	438.7505266610535	61.879	0.32957	61.976	61.79	62.12	0.096985					13	11	2	0	0	0	0.24311	1	15170	15170		16.942	1.0951	1	89423			46097	8922	26529	26530	56113	56113					0.04377819588614784
SVGPRKPE	8	Unmodified	_SVGPRKPE_					0	0	0			REV__ENST00000367203.8_1_1:204082043-204086879:+|nuORF	REV__ENST00000367203.8_1_1:204082043-204086879:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2691650390625	2	435.245609	868.476666	-0.038621	-1.681E-05	0.31939	0.00013901	0.28077	0.0001222	435.2456968987788	16.744	0.44313	16.681	16.442	16.885	-0.062534					31	15	3	0	0	0	0.32886	1	1432	1432		10.824	2.2306	1	208050	+		46098	16205	26530	26531	56114	56114					0.037166315832337204
SVGQRQLVCL	10	Unmodified	_SVGQRQLVCL_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENST00000504586.1_1_17:48764852-48765787:+|nuORF;ENST00000508929.1_1_17:48764852-48768558:+|nuORF;ENST00000502426.5_1_17:48755439-48768558:+|nuORF;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4	nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.805908203125	2	551.805508	1101.59646	0.56659	0.00031265	0.53682	0.00029622	1.1034	0.00060886	551.8056748285894	64.383	1.182	64.476	64.012	65.194	0.09288					93	43	3	0	0	0	0.29092	1	16041	16041		21.537	21.537	1	1015500			46099	1819;2221;3195	26531	26532	56115	56115					0.04972876865485887
SVGQRQLVCLA	11	Unmodified	_SVGQRQLVCLA_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENST00000504586.1_1_17:48764852-48765787:+|nuORF;ENST00000508929.1_1_17:48764852-48768558:+|nuORF;ENST00000502426.5_1_17:48755439-48768558:+|nuORF;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4	nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.8504638671875	2	587.324065	1172.63358	0.47581	0.00027946	-1.0637	-0.00062472	-0.58787	-0.00034527	587.323351887831	53.918	0.3974	53.909	53.611	54.008	-0.0096054					17	14	2	0	0	0	0.28452	1	12790	12790		29.082	9.7196	1	160420			46100	1819;2221;3195	26532	26533	56116	56116					0.05416548411267286
SVGRQKVTV	9	Unmodified	_SVGRQKVTV_					0	0	0		ENST00000443615.1_1_1:21112682-21113015:-|nuORF	ENST00000443615.1_1_1:21112682-21113015:-|nuORF	ENST00000443615.1_1_1:21112682-21113015:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.2929382324219	2	487.293091	972.571629	0.094435	4.6018E-05	-0.098286	-4.7894E-05	-0.0038504	-1.8763E-06	487.29297319971977	16.026	0.58603	16.026	15.763	16.349	0					45	20	3	0	0	0	0.28128	1	1197	1197		11.64	0.81637	1	230870			46101	10568	26533	26534	56117	56117					0.08424565054428967
SVGSALHPEQ	10	Unmodified	_SVGSALHPEQ_					0	0	0		ENST00000530196.1_1_14:70714393-70714507:-|nuORF	ENST00000530196.1_1_14:70714393-70714507:-|nuORF	ENST00000530196.1_1_14:70714393-70714507:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7693481445312	2	512.756538	1023.49852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.242	1	16.242	15.742	16.742	0								0	0	0	0.34994	1	1268	1268		14.838	0.93222	1				46102	11614	26534	26535	56118	56118					-0.012286084588708945
SVGSVITKK	9	Unmodified	_SVGSVITKK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;nc|ENSG00000076554|P55327-5|TPD52	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7845153808594	2	459.784567	917.554582	0.040556	1.8647E-05	-0.12054	-5.5421E-05	-0.079981	-3.6774E-05	459.78445311043083	17.206	0.87729	17.206	16.925	17.802	0					72	30	3	0	0	0	0.022205	1	1564	1564		63.227	30.442	1	605860			46103	12589	26535	26536	56119	56119					0.09250644448604817
SVGSVITKK	9	Unmodified	_SVGSVITKK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;nc|ENSG00000076554|P55327-5|TPD52	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.7845153808594	2	459.784567	917.554582	-0.10248	-4.7121E-05	-0.0064672	-2.9735E-06	-0.10895	-5.0094E-05	459.78452560429736	17.375	0.93455	17.258	16.993	17.928	-0.11739					78	32	4	0	0	0	0.016571	1	1620	1620		69.338	23.639	1	508170			46104	12589	26535	26536	56120	56120					0.09250644448604817
SVGSVITKK	9	Unmodified	_SVGSVITKK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;ENST00000522364.5_1_8:80963727-80992703:-|nuORF;nc|ENSG00000076554|P55327-5|TPD52	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7845153808594	2	459.784567	917.554582	0.19874	9.1378E-05	-0.35775	-0.00016449	-0.15901	-7.3109E-05	459.78437546070836	17.314	0.90045	17.254	16.971	17.872	-0.060431					79	31	4	0	0	0	0.0083763	1	1585	1585		81.915	39.96	1	537600			46105	12589	26535	26536	56121	56121					0.09250644448604817
SVGTHRFVQK	10	Unmodified	_SVGTHRFVQK_					0	0	0		nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1;nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.8230590820312	2	579.822547	1157.63054	0.097121	5.6313E-05	0.12627	7.3212E-05	0.22339	0.00012952	579.8227223596231	15.685	0.43457	15.575	15.408	15.842	-0.10981					27	14	3	0	0	0	0.41242	1	1135	1135		1.1933	0	1	65390			46106	2477	26536	26537	56122	56122					0.058030413487585975
SVGTHRFVQK	10	Unmodified	_SVGTHRFVQK_					0	0	0		nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1;nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8226928710938	2	579.822547	1157.63054	0.050781	2.9444E-05	0.0061279	3.5531E-06	0.056909	3.2997E-05	579.8226214617408	15.645	0.30849	15.581	15.391	15.7	-0.064413					21	9	3	0	0	0	0.38284	1	1094	1094		6.6304	1.7334	1	82842			46107	2477	26536	26537	56123	56123					0.058030413487585975
SVGTIFGIYRK	11	Unmodified	_SVGTIFGIYRK_					0	0	0		ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.2396240234375	3	414.239796	1239.69756	0.19647	8.1386E-05	-0.36923	-0.00015295	-0.17276	-7.1565E-05	414.2396203185385	48.263	0.48436	48.263	48.044	48.528	0					35	16	3	0	0	0	0.41517	1	11032	11032		9.2438	2.2067	1	662090			46108	5930	26537	26538	56124	56124					0.08729651839848884
SVGTIFGIYRK	11	Unmodified	_SVGTIFGIYRK_					0	0	0		ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.8333129882812	2	620.856055	1239.69756	0.4986	0.00030956	-0.26026	-0.00016159	0.23833	0.00014797	620.855819246228	48.266	0.34223	48.266	48.106	48.448	0					20	11	2	0	0	0	0.31519	1	11044	11044		37.075	21.826	1	263690			46109	5930	26537	26538	56125	56125					0.08729651839848884
SVGTIFGIYRK	11	Unmodified	_SVGTIFGIYRK_					0	0	0		ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.2397155761719	3	414.239796	1239.69756	0.47974	0.00019873	-0.72602	-0.00030075	-0.24629	-0.00010202	414.23949146012393	48.128	0.49609	48.171	47.987	48.483	0.04332					42	18	3	0	0	0	0.42582	1	10989	10989		7.846	0.80896	1	706820			46110	5930	26537	26538	56126	56126					0.08729651839848884
SVGTIFGIYRK	11	Unmodified	_SVGTIFGIYRK_					0	0	0		ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.8330688476562	2	620.856055	1239.69756	0.43953	0.00027288	-0.64393	-0.00039979	-0.2044	-0.00012691	620.8553359316412	48.185	0.30283	48.229	48.095	48.398	0.04332					17	11	2	0	0	0	0.27947	1	11008	11008		43.982	17.714	1	280190			46111	5930	26537	26538	56127	56127					0.08729651839848884
SVGTTTVEK	9	Unmodified	_SVGTTTVEK_					0	0	0			REV__ENSG00000106086|ENST00000449726|PLEKHA8;REV__nc|ENSG00000293316|O95397|PLEKHA8P1	REV__ENSG00000106086|ENST00000449726|PLEKHA8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.6006164550781	2	461.248015	920.481476	0.024179	1.1152E-05	0.79009	0.00036443	0.81427	0.00037558	461.2485411065615	27.283	0.6804	27.271	27.101	27.781	-0.01156					31	23	2	0	0	0	0.24289	1	4560	4560		13.042	2.2185	1	137450	+		46112	14509;19555	26538	26539	56128	56128					0.018054709353464204
SVGVFLRQLQE	11	Unmodified	_SVGVFLRQLQE_					0	0	0		nc|ENSG00000156026|Q8NE86-3|MCU;nc|ENSG00000156026|Q8NE86-2|MCU;ENSG00000156026|ENST00000373053|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.582275390625	3	425.906705	1274.69829	-0.08536	-3.6355E-05	0.64106	0.00027303	0.5557	0.00023668	426.2411338319949	19.778	0.55144	19.662	19.375	19.927	-0.11592					31	18	2	0	0	0	0.33085	1	2361	2361		8.2864	2.503	1	32625			46113	5214	26539	26540	56129	56129					0.07192446488920723
SVHHHILFSGL	11	Unmodified	_SVHHHILFSGL_					0	0	0		ENST00000472067.1_1_7:142991698-142998016:+|nuORF	ENST00000472067.1_1_7:142991698-142998016:+|nuORF	ENST00000472067.1_1_7:142991698-142998016:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.2278747558594	3	416.22789	1245.66184	0.11044	4.5967E-05	0.56236	0.00023407	0.6728	0.00028004	416.227900064562	29.888	0.59157	29.888	29.521	30.113	0					50	20	3	0	0	0	0.37965	1	5415	5415		7.4771	0	1	167580			46114	10889	26540	26541	56130	56130					0.04883614382856649
SVHHVCQVP	9	Unmodified	_SVHHVCQVP_					0	0	0			REV__ENST00000543701.5_1_12:3600779-3659332:+|nuORF	REV__ENST00000543701.5_1_12:3600779-3659332:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.772216796875	2	503.250369	1004.48618	-0.060201	-3.0296E-05	1.4049	0.00070703	1.3447	0.00067674	503.2510406580648	24.988	0.29185	24.956	24.862	25.154	-0.031408					15	9	2	0	0	0	0.25879	1	3923	3923		4.756	0.42677	1	37213	+		46115	14709	26541	26542	56131	56131					-0.01587923402883007
SVHLDFVL	8	Unmodified	_SVHLDFVL_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.79058837890625	2	465.258185	928.501818	-0.030099	-1.4004E-05	-2.842	-0.0013223	-2.8721	-0.0013363	465.2568744970914	28.956	0.29422	28.957	28.695	28.989	0.0012035					15	9	2	0	0	0	0.34092	1	5074	5074		13.508	0.97634	1	124550	+		46116	18080	26542	26543	56132	56132					0.03470686385821864
SVHVLLSCSF	10	Unmodified	_SVHVLLSCSF_					0	0	0			REV__ENST00000520970.5_1_8:22058712-22069238:+|nuORF	REV__ENST00000520970.5_1_8:22058712-22069238:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.2675170898438	2	546.281334	1090.54812	0.48083	0.00026267	0.55209	0.00030159	1.0329	0.00056426	546.2815875825869	31.815	1.6692	31.815	31.45	33.119	0					116	59	3	0	0	0	0.29978	1	6093	6093		20.454	5.8719	1	2526300	+		46117	21893	26543	26544	56133	56133					0.00646383225603131
SVHYPPQL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SVHYPPQL_					1	0	0		SIGLEC11|p.P462L|1|0.17|ENSG00000161640|chr19:49958549-49958549|G/A|missense_variant;ENSG00000161640|ENST00000447370|SIGLEC11	SIGLEC11|p.P462L|1|0.17|ENSG00000161640|chr19:49958549-49958549|G/A|missense_variant	SIGLEC11|p.P462L|1|0.17|ENSG00000161640|chr19:49958549-49958549|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7527770996094	2	491.753267	981.491981	0.3934	0.00019346	0.048658	2.3928E-05	0.44206	0.00021739	491.75314504003444	44.304	1.1076	44.304	43.576	44.684	0					80	40	3	0	0	0	0.20518	1	9860	9860		42.095	13.608	1	748960			46118	5522	26544	26545	56134	56134					0.0004949838041738985
SVHYPPQL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SVHYPPQL_					1	0	0		SIGLEC11|p.P462L|1|0.17|ENSG00000161640|chr19:49958549-49958549|G/A|missense_variant;ENSG00000161640|ENST00000447370|SIGLEC11	SIGLEC11|p.P462L|1|0.17|ENSG00000161640|chr19:49958549-49958549|G/A|missense_variant	SIGLEC11|p.P462L|1|0.17|ENSG00000161640|chr19:49958549-49958549|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7530212402344	2	491.753267	981.491981	0.41729	0.0002052	0.13683	6.7285E-05	0.55411	0.00027249	491.7532679934165	44.097	1.2573	44.175	43.291	44.549	0.077515					85	46	2	0	0	0	0.15515	2	9786	9723;9786		50.855	21.259	1	924900			46119	5522	26544	26545	56135;56136	56136					0.0004949838041738985
SVIATSKLS	9	Unmodified	_SVIATSKLS_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;REV3L|p.N1558Kfs*2|1|0.35|ENSG00000009413|chr6:111373681-111373682|-/T|frameshift_variant	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.25811767578125	2	453.26875	904.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.757	1	26.746	26.246	27.246	-0.01156								0	0	0	0.22666	1	4447	4447		13.906	0.39817	1				46120	407	26545	26546	56137	56137					0.0668665169465612
SVIAVSFIAAF	11	Unmodified	_SVIAVSFIAAF_					0	0	0		ENSG00000184005|ENST00000328299|ST6GALNAC3;nc|ENSG00000184005|Q8NDV1-2|ST6GALNAC3	ENSG00000184005|ENST00000328299|ST6GALNAC3	ENSG00000184005|ENST00000328299|ST6GALNAC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8213500976562	2	562.82115	1123.62775	0.36824	0.00020725	-0.1164	-6.5513E-05	0.25184	0.00014174	562.8210124811754	58.302	1.0094	58.302	57.986	58.996	0					88	34	4	0	0	0	0.35522	1	14205	14205		17.113	0	1	1572900			46121	7423	26546	26547	56138	56138					0.07087773171224399
SVIDDAWWFGT	11	Unmodified	_SVIDDAWWFGT_					0	0	0		ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.8686828613281	3	432.868027	1295.58225	0.1421	6.1512E-05	1.3444	0.00058195	1.4865	0.00064346	432.86889619209313	32.244	0.85845	32.244	31.953	32.811	0					102	30	5	0	0	0	0.43513	1	6108	6108		6.6235	0.84002	1	1153600			46122	4702	26547	26548	56139	56139					-0.053714970818418806
SVIDGNLELVK	11	Unmodified	_SVIDGNLELVK_					0	0	0		ENSG00000198435|ENST00000356628|NRARP	ENSG00000198435|ENST00000356628|NRARP	ENSG00000198435|ENST00000356628|NRARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.85302734375	2	593.837528	1185.6605	0.49477	0.00029381	-0.17522	-0.00010405	0.31955	0.00018976	593.8374121817003	55.229	0.55659	55.229	55.008	55.564	0					39	20	3	0	0	0	0.0078098	2	13158	13158;13213		74.306	40.862	1	860640			46123	8075	26548	26549	56140;56141	56140					0.07509935503389897
SVIDGNLELVK	11	Unmodified	_SVIDGNLELVK_					0	0	0		ENSG00000198435|ENST00000356628|NRARP	ENSG00000198435|ENST00000356628|NRARP	ENSG00000198435|ENST00000356628|NRARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8530883789062	2	593.837528	1185.6605	0.68135	0.00040461	-0.071218	-4.2292E-05	0.61013	0.00036232	593.8374048208763	55.204	0.5367	55.275	55.055	55.592	0.070889					42	19	3	0	0	0	0.0014237	3	13173	13125;13173;13219		90.964	43.37	1	749070			46124	8075	26548	26549	56142;56143;56144	56143					0.07509935503389897
SVIDGNLELVK	11	Unmodified	_SVIDGNLELVK_					0	0	0		ENSG00000198435|ENST00000356628|NRARP	ENSG00000198435|ENST00000356628|NRARP	ENSG00000198435|ENST00000356628|NRARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.85302734375	2	593.837528	1185.6605	0.5013	0.00029769	-0.038674	-2.2966E-05	0.46263	0.00027473	593.8374024202726	55.313	0.51312	55.294	55.052	55.565	-0.019081					37	18	3	0	0	0	0.0039637	1	13201	13201		82.445	36.705	1	796460			46125	8075	26548	26549	56145	56145					0.07509935503389897
SVIDRKDLIIK	11	Unmodified	_SVIDRKDLIIK_					0	0	0		nc|ENSG00000170085|Q8NDZ2|SIMC1;ENSG00000170085|ENST00000429602|SIMC1;nc|ENSG00000170085|Q8NDZ2-4|SIMC1;nc|ENSG00000170085|Q8NDZ2-3|SIMC1	nc|ENSG00000170085|Q8NDZ2|SIMC1	nc|ENSG00000170085|Q8NDZ2|SIMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.93780517578125	3	433.938005	1298.79219	0.042721	1.8538E-05	-0.21762	-9.4432E-05	-0.17489	-7.5894E-05	433.9378575180087	37.92	0.57469	38.011	37.772	38.347	0.090885					48	20	3	0	0	0	0.11362	1	7860	7860		38.963	21.391	1	552050			46126	6421	26549	26550	56146	56146					0.15474165591172095
SVIDRKDLIIK	11	Unmodified	_SVIDRKDLIIK_					0	0	0		nc|ENSG00000170085|Q8NDZ2|SIMC1;ENSG00000170085|ENST00000429602|SIMC1;nc|ENSG00000170085|Q8NDZ2-4|SIMC1;nc|ENSG00000170085|Q8NDZ2-3|SIMC1	nc|ENSG00000170085|Q8NDZ2|SIMC1	nc|ENSG00000170085|Q8NDZ2|SIMC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	433.938005	1298.79219	-0.022895	-9.9351E-06	-0.15973	-6.9315E-05	-0.18263	-7.925E-05	433.937862510048	37.979	0.5342	37.979	37.735	38.269	0	0.0016073	8.1458E-06	NaN	38.963	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	596070			46127	6421	26549	26550							0.15474165591172095
SVIDRKDLIIK	11	Unmodified	_SVIDRKDLIIK_					0	0	0		nc|ENSG00000170085|Q8NDZ2|SIMC1;ENSG00000170085|ENST00000429602|SIMC1;nc|ENSG00000170085|Q8NDZ2-4|SIMC1;nc|ENSG00000170085|Q8NDZ2-3|SIMC1	nc|ENSG00000170085|Q8NDZ2|SIMC1	nc|ENSG00000170085|Q8NDZ2|SIMC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	433.938005	1298.79219	-0.11459	-4.9727E-05	-0.12433	-5.3953E-05	-0.23893	-0.00010368	433.93786522534845	37.845	0.63803	37.943	37.74	38.378	0.097527	-0.035138	5.423E-05	NaN	38.963	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	545710			46128	6421	26549	26550							0.15474165591172095
SVIDSVTKK	9	Unmodified	_SVIDSVTKK_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7873840332031	2	488.787307	975.560061	0.25866	0.00012643	-0.15278	-7.4675E-05	0.10589	5.1756E-05	488.78723703073337	24.945	0.5028	24.945	24.736	25.239	0					42	17	3	0	0	0	0.14786	2	3908	3908;3957		31.268	0	1	247700			46129	4987	26550	26551	56147;56148	56147					0.07130323240426151
SVIDSVTKK	9	Unmodified	_SVIDSVTKK_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7871398925781	2	488.787307	975.560061	0.15977	7.8092E-05	0.098519	4.8155E-05	0.25829	0.00012625	488.7873212984262	25.051	0.59207	24.995	24.748	25.341	-0.055931					41	20	3	0	0	0	0.11201	2	3925	3925;3974		36.506	5.2379	1	273880			46130	4987	26550	26551	56149;56150	56149					0.07130323240426151
SVIDSVTKK	9	Unmodified	_SVIDSVTKK_					0	0	0		ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	ENSG00000151835|ENST00000382292|SACS	ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7870788574219	2	488.787307	975.560061	-0.05782	-2.8262E-05	0.2547	0.00012449	0.19688	9.6231E-05	488.7873381461712	24.968	0.55558	24.936	24.709	25.265	-0.031408					41	18	3	0	0	0	0.086462	1	3904	3904		40.239	5.3071	1	295760			46131	4987	26550	26551	56151	56151					0.07130323240426151
SVIDTVNPTLK	11	Unmodified	_SVIDTVNPTLK_					0	0	0			REV__ENSG00000188641|ENST00000370192|DPYD	REV__ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8524780273438	2	593.837528	1185.6605	0.5013	0.00029769	-0.038674	-2.2966E-05	0.46263	0.00027473	593.8374024202726	55.313	0.51312	55.294	55.052	55.565	-0.019081					37	18	3	0	0	0	0.32895	1	13254	13254		19.626	1.7628	1	796460	+		46132	18562	26551	26552	56152	56152					0.07509935503412635
SVIDVFNQR	9	Unmodified	_SVIDVFNQR_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.301025390625	2	539.288005	1076.56146	0.48782	0.00026307	-0.12646	-6.8198E-05	0.36136	0.00019488	539.2878752727221	51.765	0.48911	51.765	51.508	51.997	0					31	17	2	0	0	0	0.0037449	2	12113	12061;12113		96.367	60.24	1	842460			46133	7673	26552	26553	56153;56154	56154					0.02623957329183213
SVIDVFNQR	9	Unmodified	_SVIDVFNQR_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.3009643554688	2	539.288005	1076.56146	0.4582	0.0002471	-0.33091	-0.00017846	0.12729	6.8645E-05	539.28795213518	51.749	0.60809	51.795	51.504	52.112	0.046574					47	21	3	0	0	0	0.018449	2	12055	12055;12156		66.457	37.375	1	719070			46134	7673	26552	26553	56155;56156	56155					0.02623957329183213
SVIDVFNQR	9	Unmodified	_SVIDVFNQR_					0	0	0		nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.300537109375	2	539.288005	1076.56146	0.37066	0.00019989	-0.29672	-0.00016002	0.073943	3.9877E-05	539.2879715688784	51.87	0.48743	51.869	51.602	52.09	-0.00081253					40	17	3	0	0	0	0.0013683	3	12130	12081;12130;12178		118.07	65.8	1	667830			46135	7673	26552	26553	56157;56158;56159	56158					0.02623957329183213
SVIDYQTHFR	10	Unmodified	_SVIDYQTHFR_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;ENST00000514548.1_1_5:114952016-114952166:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.54718017578125	3	422.547288	1264.62004	-0.25539	-0.00010791	-0.017394	-7.3498E-06	-0.27278	-0.00011526	422.5474159694636	39.851	1.1811	39.851	39.48	40.662	0					120	42	5	0	0	0	0.2534	1	8408	8408		26.121	9.0723	1	4312200			46136	3834	26553	26554	56160	56160					-0.0016898609637792106
SVIDYQTHFR	10	Unmodified	_SVIDYQTHFR_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;ENST00000514548.1_1_5:114952016-114952166:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3175659179688	2	633.317294	1264.62004	0.12248	7.7567E-05	0.23849	0.00015104	0.36097	0.00022861	633.3174136145625	39.858	0.68934	39.858	39.569	40.259	0					68	24	4	0	0	0	0.0024901	2	8416	8416;8464		128.87	90.694	1	998870			46137	3834	26553	26554	56161;56162	56161					-0.0016898609637792106
SVIDYQTHFR	10	Unmodified	_SVIDYQTHFR_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;ENST00000514548.1_1_5:114952016-114952166:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.88165283203125	3	422.547288	1264.62004	-0.0049017	-2.0712E-06	-0.30693	-0.00012969	-0.31183	-0.00013176	422.54732162134025	39.664	1.1693	39.756	39.416	40.585	0.09267					116	41	5	0	0	0	0.28624	1	8335	8335		22.109	8.5739	1	4732200			46138	3834	26553	26554	56163	56163					-0.0016898609637792106
SVIDYQTHFR	10	Unmodified	_SVIDYQTHFR_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;ENST00000514548.1_1_5:114952016-114952166:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3175048828125	2	633.317294	1264.62004	0.40466	0.00025628	-0.045329	-2.8707E-05	0.35933	0.00022757	633.3172484556645	39.643	0.52245	39.735	39.497	40.02	0.09267					54	18	4	0	0	0	0.0024901	2	8404	8354;8404		128.87	90.694	1	1138900			46139	3834	26553	26554	56164;56165	56165					-0.0016898609637792106
SVIDYQTHFR	10	Unmodified	_SVIDYQTHFR_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;ENST00000514548.1_1_5:114952016-114952166:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5472412109375	3	422.547288	1264.62004	0.0038848	1.6415E-06	-0.2611	-0.00011033	-0.25721	-0.00010869	422.5472921907317	39.602	1.083	39.701	39.396	40.479	0.099403					111	38	4	0	0	0	0.27881	1	8327	8327		23.016	9.497	1	5751500			46140	3834	26553	26554	56166	56166					-0.0016898609637792106
SVIDYQTHFR	10	Unmodified	_SVIDYQTHFR_					0	0	0		ENST00000503010.1_1_5:114951908-114961566:-|nuORF;ENSG00000134970|ENST00000456936|TMED7;ENST00000514548.1_1_5:114952016-114952166:-|nuORF;nc|ENSG00000134970|Q9Y3B3-2|TMED7;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	ENST00000503010.1_1_5:114951908-114961566:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3177490234375	2	633.317294	1264.62004	0.45042	0.00028526	-0.145	-9.1834E-05	0.30542	0.00019343	633.317106441032	39.592	0.55633	39.691	39.481	40.038	0.099407					50	19	3	0	0	0	0.0017077	3	8338	8338;8388;8407		125.18	79.482	1	1235400			46141	3834	26553	26554	56167;56168;56169	56167					-0.0016898609637792106
SVIEHLLR	8	Unmodified	_SVIEHLLR_					0	0	0		ENST00000322602.9_1_5:153418645-153418858:+|nuORF	ENST00000322602.9_1_5:153418645-153418858:+|nuORF	ENST00000322602.9_1_5:153418645-153418858:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.832275390625	2	483.790184	965.565815	0.35776	0.00017308	0.16417	7.9423E-05	0.52192	0.0002525	483.790456877965	39.151	0.43685	39.251	39.074	39.511	0.099407					18	15	2	0	0	0	0.32435	1	8214	8214		16.942	0	1	83719			46142	9394	26554	26555	56170	56170					0.08165466542766353
SVIESPSTNR	10	Unmodified	_SVIESPSTNR_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.Q632Tfs*30|1|0.26|ENSG00000180530|chr21:14966299-14966300|-/T|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2801513671875	2	545.280377	1088.5462	0.35201	0.00019194	0.017232	9.3962E-06	0.36924	0.00020134	545.2800505354412	25.383	0.62268	25.383	25.091	25.714	0					32	20	2	0	0	0	0.10215	1	4065	4065		47.594	11.467	1	117950			46143	7191	26555	26556	56171	56171					0.005470457413366603
SVIESPSTNR	10	Unmodified	_SVIESPSTNR_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.Q632Tfs*30|1|0.26|ENSG00000180530|chr21:14966299-14966300|-/T|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.772216796875	2	545.280377	1088.5462	0.32204	0.0001756	0.86748	0.00047302	1.1895	0.00064862	545.2804504458427	25.516	0.62996	25.46	25.102	25.732	-0.055931					40	21	3	0	0	0	0.30076	1	4008	4008		22.658	9.0432	1	141250			46144	7191	26555	26556	56172	56172					0.005470457413366603
SVIESPSTNR	10	Unmodified	_SVIESPSTNR_					0	0	0		ENSG00000180530|ENST00000318948|NRIP1;NRIP1|p.Q632Tfs*30|1|0.26|ENSG00000180530|chr21:14966299-14966300|-/T|frameshift_variant	ENSG00000180530|ENST00000318948|NRIP1	ENSG00000180530|ENST00000318948|NRIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.28076171875	2	545.280377	1088.5462	0.26346	0.00014366	0.28153	0.00015351	0.545	0.00029718	545.2804395101751	25.466	0.58354	25.435	25.098	25.682	-0.031408					31	20	2	0	0	0	0.19345	1	4087	4087		33.445	12.991	1	116340			46145	7191	26555	26556	56173	56173					0.005470457413366603
SVIFYFTT	8	Unmodified	_SVIFYFTT_					0	0	0			REV__ENSG00000282608|ENST00000241356|ADORA3	REV__ENSG00000282608|ENST00000241356|ADORA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7875061035156	2	489.252569	976.490584	-0.10038	-4.9112E-05	0.055504	2.7156E-05	-0.044877	-2.1956E-05	489.25226927859467	25.15	0.40395	25.119	24.833	25.237	-0.03141					22	13	2	0	0	0	0.34247	1	3949	3949		8.5933	1.304	1	52975	+		46146	19362	26556	26557	56174	56174					0.00139864291656977
SVIGLQMGTNK	11	Oxidation (M)	_SVIGLQM(Oxidation (M))GTNK_		SVIGLQM(1)GTNK		SVIGLQM(120)GTNK	0	0	1		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.308349609375	2	582.308081	1162.60161	0.46183	0.00026893	-0.32418	-0.00018877	0.13765	8.0152E-05	582.307664808025	32.136	0.67041	32.136	31.829	32.5	0					39	23	2	0	0	0	1.0974E-05	2	6082	6082;6135		123.38	77.684	1	516800			46147	2798	26557	26558	56175;56176	56175		354			0.026811359374505628
SVIGLQMGTNK	11	Oxidation (M)	_SVIGLQM(Oxidation (M))GTNK_		SVIGLQM(1)GTNK		SVIGLQM(130)GTNK	0	0	1		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3081665039062	2	582.308081	1162.60161	0.52617	0.00030639	-0.10983	-6.3955E-05	0.41634	0.00024244	582.3078059274455	32.005	0.5848	32.047	31.823	32.408	0.042366					33	20	2	0	0	0	6.2625E-07	1	6071	6071		133.12	79.291	1	464540			46148	2798	26557	26558	56177	56177		354			0.026811359374505628
SVIGLQMGTNK	11	Oxidation (M)	_SVIGLQM(Oxidation (M))GTNK_		SVIGLQM(1)GTNK		SVIGLQM(120)GTNK	0	0	1		nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.3070678710938	2	582.308081	1162.60161	0.35086	0.00020431	-0.14497	-8.4418E-05	0.20589	0.00011989	582.3077418851562	32.016	0.67544	32.057	31.89	32.565	0.040989					43	23	3	0	0	0	1.4992E-05	2	6041	6041;6105		119.6	65.77	1	543330			46149	2798	26557	26558	56178;56179	56178		354			0.026811359374505628
SVIGMRKLAML	11	Unmodified	_SVIGMRKLAML_					0	0	0			REV__UBA5|p.E241Dfs*2|1|0.24|ENSG00000081307|chr3:132672084-132672085|-/TGAT|frameshift_variant	REV__UBA5|p.E241Dfs*2|1|0.24|ENSG00000081307|chr3:132672084-132672085|-/TGAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5644836425781	3	406.906883	1217.69882	0.031189	1.2691E-05	0.077869	3.1686E-05	0.10906	4.4377E-05	406.90682095807426	36.126	0.47829	36.126	35.907	36.385	0					39	17	3	0	0	0	0.3826	1	7307	7307		13.519	1.2911	1	498140	+		46150	13902	26558	26559	56180	56180					0.09867826612753561
SVIGVFITK	9	Unmodified	_SVIGVFITK_					0	0	0		ENSG00000185052|ENST00000328041|SLC24A3	ENSG00000185052|ENST00000328041|SLC24A3	ENSG00000185052|ENST00000328041|SLC24A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.29736328125	2	482.29731	962.580068	0.82264	0.00039676	-0.90292	-0.00043548	-0.080285	-3.8721E-05	482.2968347213976	55.979	0.47353	55.979	55.628	56.101	0					25	16	2	0	0	0	0.069258	1	13405	13405		45.74	15.103	1	644810			46151	7504	26559	26560	56181	56181					0.09728118971020194
SVIGVFITK	9	Unmodified	_SVIGVFITK_					0	0	0		ENSG00000185052|ENST00000328041|SLC24A3	ENSG00000185052|ENST00000328041|SLC24A3	ENSG00000185052|ENST00000328041|SLC24A3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	482.29731	962.580068	0.65506	0.00031593	-0.42897	-0.00020689	0.22608	0.00010904	482.29679251506275	55.901	0.48464	55.972	55.703	56.187	0.070889	-0.007852	0.00025911	NaN	45.74	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535850			46152	7504	26559	26560							0.09728118971020194
SVIGVFITK	9	Unmodified	_SVIGVFITK_					0	0	0		ENSG00000185052|ENST00000328041|SLC24A3	ENSG00000185052|ENST00000328041|SLC24A3	ENSG00000185052|ENST00000328041|SLC24A3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	482.29731	962.580068	0.75669	0.00036495	-0.61197	-0.00029515	0.14472	6.98E-05	482.296954229941	56.007	0.40941	55.988	55.75	56.159	-0.019081	0.0080807	8.2593E-05	NaN	45.74	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	481600			46153	7504	26559	26560							0.09728118971020194
SVIHRCALLIL	11	Unmodified	_SVIHRCALLIL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.N2925Kfs*3|1|0.27|ENSG00000103657|chr15:63663110-63663111|-/TT|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.54315185546875	3	413.253159	1236.73765	-0.65451	-0.00027048	3.6188	0.0014955	2.9643	0.001225	413.255902759013	34.77	0.11306	34.848	34.78	34.893	0.077377					5	3	2	0	0	0	0.33303	1	6882	6882		2.4348	0.18206	1	24860			46154	1848	26560	26561	56182	56182					0.1287487523877644
SVIKQPPRFF	10	Unmodified	_SVIKQPPRFF_					0	0	0			REV__ENSG00000183783|ENST00000360029|KCTD8	REV__ENSG00000183783|ENST00000360029|KCTD8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.8961181640625	3	406.904636	1217.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.787	1	36.88	36.38	37.38	0.093018								0	0	0	0.37145	1	7502	7502		5.7834	0	1		+		46155	18284	26561	26562	56183	56183					0.09193973048036241
SVIKTQETK	9	Unmodified	_SVIKTQETK_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7597045898438	2	517.298039	1032.58152	0.047213	2.4423E-05	0.11264	5.8268E-05	0.15985	8.2691E-05	517.298033434005	14.131	0.48799	14.131	13.847	14.335	0					28	16	3	0	0	0	0.25843	1	622	622		5.7319	0	1	98317			46156	2957	26562	26563	56184	56184					0.06653708269118397
SVIKTQETK	9	Unmodified	_SVIKTQETK_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	517.298039	1032.58152	-0.041431	-2.1432E-05	0.50321	0.00026031	0.46178	0.00023888	517.2982772270012	14.195	0.58106	14.09	13.873	14.454	-0.10466	-0.029501	9.1754E-05	NaN	15.248	28	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123110			46157	2957	26562	26563							0.06653708269118397
SVIKTQETK	9	Unmodified	_SVIKTQETK_					0	0	0		nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1	nc|ENSG00000120690|P32519-2|ELF1	nc|ENSG00000120690|P32519-2|ELF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	517.298039	1032.58152	-0.077699	-4.0193E-05	0.51762	0.00026777	0.43992	0.00022757	517.2982431563058	14.205	0.37206	14.139	13.889	14.261	-0.066068	0.01853	0.00010667	NaN	15.248	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96024			46158	2957	26562	26563							0.06653708269118397
SVILPILKK	9	Unmodified	_SVILPILKK_					0	0	0		SESTD1|p.C96Vfs*3|1|0.14|ENSG00000187231|chr2:179172203-179172203|A/-|frameshift_variant;ENST00000486468.1_1_2:180027226-180056568:-|nuORF;ENSG00000187231|ENST00000428443|SESTD1	SESTD1|p.C96Vfs*3|1|0.14|ENSG00000187231|chr2:179172203-179172203|A/-|frameshift_variant	SESTD1|p.C96Vfs*3|1|0.14|ENSG00000187231|chr2:179172203-179172203|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8523864746094	2	505.852253	1009.68995	0.21273	0.00010761	-0.27827	-0.00014077	-0.065538	-3.3153E-05	505.85201621720125	46.249	0.62557	46.249	45.832	46.458	0					39	22	2	0	0	0	0.22188	1	10421	10421		20.454	0	1	584110			46159	7671	26563	26564	56185	56185					0.18549544310224064
SVILPILKK	9	Unmodified	_SVILPILKK_					0	0	0		SESTD1|p.C96Vfs*3|1|0.14|ENSG00000187231|chr2:179172203-179172203|A/-|frameshift_variant;ENST00000486468.1_1_2:180027226-180056568:-|nuORF;ENSG00000187231|ENST00000428443|SESTD1	SESTD1|p.C96Vfs*3|1|0.14|ENSG00000187231|chr2:179172203-179172203|A/-|frameshift_variant	SESTD1|p.C96Vfs*3|1|0.14|ENSG00000187231|chr2:179172203-179172203|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.852294921875	2	505.852253	1009.68995	0.10303	5.212E-05	-0.39856	-0.00020161	-0.29553	-0.00014949	505.8519340007088	46.189	0.71385	46.249	45.871	46.585	0.059834					50	25	3	0	0	0	0.18803	2	10354	10354;10405		25.399	0	1	810430			46160	7671	26563	26564	56186;56187	56186					0.18549544310224064
SVILPILKK	9	Unmodified	_SVILPILKK_					0	0	0		SESTD1|p.C96Vfs*3|1|0.14|ENSG00000187231|chr2:179172203-179172203|A/-|frameshift_variant;ENST00000486468.1_1_2:180027226-180056568:-|nuORF;ENSG00000187231|ENST00000428443|SESTD1	SESTD1|p.C96Vfs*3|1|0.14|ENSG00000187231|chr2:179172203-179172203|A/-|frameshift_variant	SESTD1|p.C96Vfs*3|1|0.14|ENSG00000187231|chr2:179172203-179172203|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.8521423339844	2	505.852253	1009.68995	0.28938	0.00014638	-0.65043	-0.00032902	-0.36106	-0.00018264	505.85180460735774	46.194	0.68279	46.259	45.872	46.555	0.065048					50	24	3	0	0	0	0.15219	1	10351	10351		30.637	0	1	822740			46161	7671	26563	26564	56188	56188					0.18549544310224064
SVINKENQL	9	Unmodified	_SVINKENQL_					0	0	0			REV__nc|ENSG00000117305|P35914-3|HMGCL	REV__nc|ENSG00000117305|P35914-3|HMGCL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7755126953125	2	522.787838	1043.56112	0.39125	0.00020454	-0.40109	-0.00020968	-0.009835	-5.1416E-06	522.7875736033308	26.756	0.33927	26.756	26.614	26.953	0					21	11	2	0	0	0	0.23007	1	4484	4484		19.257	2.3147	1	78202	+		46162	14963	26564	26565	56189	56189					0.04108537609317864
SVINKENQL	9	Unmodified	_SVINKENQL_					0	0	0			REV__nc|ENSG00000117305|P35914-3|HMGCL	REV__nc|ENSG00000117305|P35914-3|HMGCL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7754516601562	2	522.787838	1043.56112	0.36443	0.00019052	-0.49442	-0.00025848	-0.12999	-6.7957E-05	522.7876964986575	26.848	0.72708	26.826	26.564	27.291	-0.021412					51	25	3	0	0	0	0.18803	1	4500	4500		25.399	9.5521	1	113300	+		46163	14963	26564	26565	56190	56190					0.04108537609317864
SVINKENQL	9	Unmodified	_SVINKENQL_					0	0	0			REV__nc|ENSG00000117305|P35914-3|HMGCL	REV__nc|ENSG00000117305|P35914-3|HMGCL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7755126953125	2	522.787838	1043.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.938	1	26.927	26.427	27.427	-0.01156								0	0	0	0.22065	1	4502	4502		15.847	3.3156	1		+		46164	14963	26564	26565	56191	56191					0.04108537609317864
SVINKVTEK	9	Unmodified	_SVINKVTEK_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3006286621094	2	509.300581	1016.58661	0.5683	0.00028943	-0.12098	-6.1614E-05	0.44732	0.00022782	509.30045683402733	20.231	0.46722	20.178	19.981	20.448	-0.052912					29	16	2	0	0	0	0.069258	1	2471	2471		45.74	14.472	1	302130			46165	3181	26565	26566	56192	56192					0.07898012131749965
SVINPGAIYR	10	Unmodified	_SVINPGAIYR_					0	0	0		ENSG00000115232|ENST00000397033|ITGA4;ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF	ENSG00000115232|ENST00000397033|ITGA4	ENSG00000115232|ENST00000397033|ITGA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3065185546875	2	545.306198	1088.59784	0.80311	0.00043794	-1.1451	-0.00062443	-0.342	-0.00018649	545.3055893845474	45.848	0.983	45.848	45.341	46.324	0					98	35	5	0	0	0	0.0031261	1	10227	10227		107.1	49.378	1	2537800			46166	2620	26566	26567	56193	56193					0.057088342259021374
SVINPGAIYR	10	Unmodified	_SVINPGAIYR_					0	0	0		ENSG00000115232|ENST00000397033|ITGA4;ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF	ENSG00000115232|ENST00000397033|ITGA4	ENSG00000115232|ENST00000397033|ITGA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3059692382812	2	545.306198	1088.59784	0.63005	0.00034357	-0.97644	-0.00053246	-0.34639	-0.00018889	545.3056062279423	45.704	0.84005	45.764	45.31	46.15	0.059837					83	29	4	0	0	0	0.0017096	1	10231	10231		111.31	57.905	1	3098500			46167	2620	26566	26567	56194	56194					0.057088342259021374
SVINPGAIYR	10	Unmodified	_SVINPGAIYR_					0	0	0		ENSG00000115232|ENST00000397033|ITGA4;ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF	ENSG00000115232|ENST00000397033|ITGA4	ENSG00000115232|ENST00000397033|ITGA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3062744140625	2	545.306198	1088.59784	0.78115	0.00042597	-1.0348	-0.0005643	-0.25368	-0.00013833	545.3055235970419	45.667	0.92513	45.732	45.302	46.227	0.065048					94	33	4	0	0	0	0.0017096	1	10176	10176		111.31	49.707	1	2506600			46168	2620	26566	26567	56195	56195					0.057088342259021374
SVINVFVGR	9	Unmodified	_SVINVFVGR_					0	0	0		nc|ENSG00000135540|Q5SYE7|NHSL1;ENSG00000135540|ENST00000343505|NHSL1	nc|ENSG00000135540|Q5SYE7|NHSL1	nc|ENSG00000135540|Q5SYE7|NHSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7903137207031	2	495.790184	989.565815	0.75021	0.00037195	-1.1765	-0.00058329	-0.42627	-0.00021134	495.78909415714907	54.687	1.0687	54.687	54.105	55.174	0					96	38	4	0	0	0	0.0023895	1	13017	13017		107.1	45.498	1	2219700			46169	3882	26567	26568	56196	56196					0.07061466542756989
SVINVFVGR	9	Unmodified	_SVINVFVGR_					0	0	0		nc|ENSG00000135540|Q5SYE7|NHSL1;ENSG00000135540|ENST00000343505|NHSL1	nc|ENSG00000135540|Q5SYE7|NHSL1	nc|ENSG00000135540|Q5SYE7|NHSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7903137207031	2	495.790184	989.565815	0.68333	0.00033879	-1.0659	-0.00052847	-0.38258	-0.00018968	495.7889230366679	54.638	0.93226	54.701	54.115	55.048	0.063206					81	34	4	0	0	0	0.001957	1	13005	13005		110.55	40.221	1	2048600			46170	3882	26567	26568	56197	56197					0.07061466542756989
SVINVFVGR	9	Unmodified	_SVINVFVGR_					0	0	0		nc|ENSG00000135540|Q5SYE7|NHSL1;ENSG00000135540|ENST00000343505|NHSL1	nc|ENSG00000135540|Q5SYE7|NHSL1	nc|ENSG00000135540|Q5SYE7|NHSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7902526855469	2	495.790184	989.565815	0.68413	0.00033919	-1.0566	-0.00052383	-0.37243	-0.00018465	495.7891203319416	54.83	1.0954	54.814	54.197	55.293	-0.015923					82	39	4	0	0	0	0.0023895	1	13034	13034		107.1	63.118	1	2397700			46171	3882	26567	26568	56198	56198					0.07061466542756989
SVIPFNLL	8	Unmodified	_SVIPFNLL_					0	0	0		ENST00000427464.1_3_21:42801441-42804029:+|nuORF	ENST00000427464.1_3_21:42801441-42804029:+|nuORF	ENST00000427464.1_3_21:42801441-42804029:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2479553222656	2	451.770929	901.527304	0.0076662	3.4633E-06	-4.1386	-0.0018697	-4.1309	-0.0018662	451.76875310752047	28.821	0.20838	28.822	28.686	28.894	0.0004673					9	6	2	0	0	0	0.34092	1	5042	5042		8.5933	0.68312	1	42622			46172	10433	26568	26569	56199	56199					0.07260160908231228
SVIRDYLVQK	10	Unmodified	_SVIRDYLVQK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.8538208007812	2	610.853512	1219.69247	0.46185	0.00028212	-0.15171	-9.2674E-05	0.31013	0.00018945	610.8533944676404	40.305	0.6378	40.305	40.024	40.662	0					61	22	4	0	0	0	0.032277	1	8586	8586		55.249	32.591	1	825890			46173	5477	26569	26570	56200	56200					0.09141347977197256
SVIRDYLVQK	10	Unmodified	_SVIRDYLVQK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.8536987304688	2	610.853512	1219.69247	0.56201	0.00034331	-0.29625	-0.00018097	0.26576	0.00016234	610.8532540932194	40.071	0.72755	40.163	39.858	40.585	0.092674					56	25	3	0	0	0	0.0645	2	8522	8478;8522		62.869	36.6	1	817670			46174	5477	26569	26570	56201;56202	56202					0.09141347977197256
SVIRDYLVQK	10	Unmodified	_SVIRDYLVQK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.8536376953125	2	610.853512	1219.69247	0.36071	0.00022034	0.020069	1.2259E-05	0.38078	0.0002326	610.8534081090831	40.027	0.66329	40.127	39.868	40.532	0.099403					58	23	3	0	0	0	0.0052664	2	8481	8481;8533		101.54	59.231	1	982280			46175	5477	26569	26570	56203;56204	56203					0.09141347977197256
SVIRDYLVQK	10	Unmodified	_SVIRDYLVQK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5711975097656	3	407.571434	1219.69247	0.093021	3.7913E-05	-0.62816	-0.00025602	-0.53514	-0.00021811	407.57114282073877	40.018	0.79723	40.117	39.844	40.641	0.099407					82	28	4	0	0	0	0.1226	1	8476	8476		66.55	50.811	1	1508000			46176	5477	26569	26570	56205	56205					0.09141347977197256
SVIRDYLVQK	10	Unmodified	_SVIRDYLVQK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	407.571434	1219.69247	0.062657	2.5537E-05	-0.59917	-0.0002442	-0.53651	-0.00021867	407.57114786773417	40.29	0.99187	40.29	39.968	40.96	0	0.114	0.00010059	NaN	66.55	91	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1669700			46177	5477	26569	26570							0.09141347977197256
SVIRDYLVQK	10	Unmodified	_SVIRDYLVQK_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	407.571434	1219.69247	0.22068	8.9944E-05	-0.77011	-0.00031387	-0.54942	-0.00022393	407.5710932344629	40.029	0.91578	40.122	39.83	40.745	0.09267	-0.054462	-0.00010842	NaN	66.55	73	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1501500			46178	5477	26569	26570							0.09141347977197256
SVIRKMYESKE	11	Unmodified	_SVIRKMYESKE_					0	0	0		nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1	nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1	nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2433166503906	3	457.242988	1368.70714	0.22634	0.00010349	0.36491	0.00016685	0.59125	0.00027035	457.2431012848155	53.207	1.3879	53.197	52.761	54.149	-0.0096054					137	51	4	0	0	0	0.43809	1	12544	12544		6.2344	1.8282	1	2896400			46179	7468	26570	26571	56206	56206					0.03753052063052564
SVISGINEK	9	Unmodified	_SVISGINEK_					0	0	0		CYB561A3|p.A169V|1|0.2|ENSG00000162144|chr11:61353027-61353027|G/A|missense_variant;ENST00000546151.5_1_11:61120455-61125280:-|nuORF;ENST00000540317.5_1_11:61120455-61129340:-|nuORF;ENSG00000162144|ENST00000294072|CYB561A3;nc|ENSG00000162144|Q8NBI2-2|CYB561A3	CYB561A3|p.A169V|1|0.2|ENSG00000162144|chr11:61353027-61353027|G/A|missense_variant	CYB561A3|p.A169V|1|0.2|ENSG00000162144|chr11:61353027-61353027|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2516784667969	2	473.763832	945.513111	-0.082258	-3.8971E-05	-0.27105	-0.00012841	-0.35331	-0.00016739	473.7638750177179	30.27	0.26028	30.297	30.134	30.394	0.027157					14	8	2	0	0	0	0.24467	1	5499	5499		17.113	1.8644	1	150830			46180	253	26571	26572	56207	56207					0.03817463689279066
SVISHLLRV	9	Unmodified	_SVISHLLRV_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;nc|ENSG00000114520|O95219-2|SNX4	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.84515380859375	2	512.319109	1022.62366	0.34912	0.00017886	-0.66971	-0.00034311	-0.3206	-0.00016425	512.3187523207445	51.602	0.82565	51.602	51.354	52.18	0					46	30	2	0	0	0	0.17696	1	12055	12055		29.841	8.0939	1	568510			46181	2572	26572	26573	56208	56208					0.11325728468182206
SVISHLLRV	9	Unmodified	_SVISHLLRV_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;nc|ENSG00000114520|O95219-2|SNX4	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.84521484375	2	512.319109	1022.62366	0.26548	0.00013601	-0.32768	-0.00016788	-0.062194	-3.1863E-05	512.3189122265665	51.587	0.79276	51.634	51.375	52.168	0.046574					38	28	2	0	0	0	0.17696	1	12044	12044		29.841	16.798	1	569790			46182	2572	26572	26573	56209	56209					0.11325728468182206
SVISHLLRV	9	Unmodified	_SVISHLLRV_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;nc|ENSG00000114520|O95219-2|SNX4	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.84527587890625	2	512.319109	1022.62366	0.088746	4.5467E-05	-0.29169	-0.00014944	-0.20294	-0.00010397	512.3189611646122	51.738	0.69516	51.748	51.533	52.228	0.0095634					42	25	2	0	0	0	0.19686	1	12118	12118		31.268	9.5217	1	542870			46183	2572	26572	26573	56210	56210					0.11325728468182206
SVISSPLLK	9	Unmodified	_SVISSPLLK_					0	0	0		nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2	nc|ENSG00000204256|P25440-3|BRD2	nc|ENSG00000204256|P25440-3|BRD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.29486083984375	2	472.294768	942.574983	0.40385	0.00019074	-0.11807	-5.5762E-05	0.28578	0.00013497	472.294638250805	47.114	0.44883	47.114	46.992	47.44	0					28	15	2	0	0	0	0.18208	1	10716	10716		26.268	4.7312	1	470430			46184	8208	26573	26574	56211	56211					0.1013981510842541
SVISSPLLK	9	Unmodified	_SVISSPLLK_					0	0	0		nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2	nc|ENSG00000204256|P25440-3|BRD2	nc|ENSG00000204256|P25440-3|BRD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2945861816406	2	472.294768	942.574983	0.15012	7.0899E-05	-0.10994	-5.1925E-05	0.040176	1.8975E-05	472.29466656780176	47.127	0.58865	47.179	46.955	47.544	0.052574					35	21	2	0	0	0	0.069366	1	10673	10673		45.7	3.86	1	572850			46185	8208	26573	26574	56212	56212					0.1013981510842541
SVISSPLLK	9	Unmodified	_SVISSPLLK_					0	0	0		nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2;nc|ENSG00000204256|P25440-4|BRD2	nc|ENSG00000204256|P25440-3|BRD2	nc|ENSG00000204256|P25440-3|BRD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2947692871094	2	472.294768	942.574983	0.86081	0.00040656	-0.75272	-0.0003555	0.10809	5.1051E-05	472.294350096306	47.135	0.56929	47.189	46.972	47.541	0.054371					37	20	3	0	0	0	0.074552	1	10681	10681		43.772	14.691	1	678840			46186	8208	26573	26574	56213	56213					0.1013981510842541
SVITATWVY	9	Unmodified	_SVITATWVY_					0	0	0		nc|ENSG00000134873|P78369-3|CLDN10;nc|ENSG00000134873|P78369-2|CLDN10	nc|ENSG00000134873|P78369-3|CLDN10	nc|ENSG00000134873|P78369-3|CLDN10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3473510742188	2	520.276575	1038.5386	0.48713	0.00025344	-1.4432	-0.00075088	-0.95611	-0.00049744	520.2754583255108	72.419	1.1693	72.476	72.005	73.174	0.056572					55	42	2	0	0	0	0.1524	1	18456	18456		39.957	11.47	1	157060			46187	12709	26574	26575	56214	56214					0.020869382117098212
SVITIVKSK	9	Unmodified	_SVITIVKSK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.8160400390625	2	487.815867	973.617182	0.059397	2.8975E-05	0.41942	0.0002046	0.47881	0.00023357	487.8159678653704	28.379	1.21	28.379	28.008	29.218	0					127	42	4	0	0	0	8.5298E-05	4	4960	4909;4960;5011;5059		143.21	76.757	1	2223000			46188	7925	26575	26576	56215;56216;56217;56218	56216					0.12931790516802266
SVITIVKSK	9	Unmodified	_SVITIVKSK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.8160705566406	2	487.815867	973.617182	0.093088	4.541E-05	0.43698	0.00021317	0.53007	0.00025858	487.81595628766365	28.37	1.1782	28.366	27.966	29.144	-0.0042572					127	41	4	0	0	0	0.00010651	4	4960	4914;4960;5003;5052		139.78	74.413	1	2089800			46189	7925	26575	26576	56219;56220;56221;56222	56220					0.12931790516802266
SVITIVKSK	9	Unmodified	_SVITIVKSK_					0	0	0		ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	ENSG00000197063|ENST00000357736|MAFG	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	487.815867	973.617182	0.015687	7.6522E-06	0.45623	0.00022255	0.47191	0.00023021	487.8160007480307	28.386	1.1835	28.386	28.023	29.207	0.0004673	0.0092513	1.5122E-05	NaN	143.21	116	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2092600			46190	7925	26575	26576							0.12931790516802266
SVITKKLEDVK	11	Unmodified	_SVITKKLEDVK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;ENST00000522364.5_1_8:80963727-80992703:-|nuORF	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.5902099609375	3	420.590494	1258.74965	-0.42113	-0.00017712	-0.040591	-1.7072E-05	-0.46172	-0.0001942	420.59041793116546	28.121	0.51926	28.121	27.87	28.389	0					38	17	3	0	0	0	0.13599	2	4839	4839;4889		36.955	27.191	1	389500			46191	12589	26576	26577	56223;56224	56223					0.13062770462920525
SVITKKLEDVK	11	Unmodified	_SVITKKLEDVK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;ENST00000522364.5_1_8:80963727-80992703:-|nuORF	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.59014892578125	3	420.590494	1258.74965	-0.25001	-0.00010515	-0.23395	-9.8397E-05	-0.48396	-0.00020355	420.59029042277655	28.092	0.6449	28.088	27.793	28.438	-0.0042572					49	22	4	0	0	0	0.25663	1	4889	4889		26.121	16.357	1	388980			46192	12589	26576	26577	56225	56225					0.13062770462920525
SVITKKLEDVK	11	Unmodified	_SVITKKLEDVK_					0	0	0		nc|ENSG00000076554|P55327-7|TPD52;ENSG00000076554|ENST00000518937|TPD52;nc|ENSG00000076554|P55327-6|TPD52;ENST00000521354.5_1_8:80950353-81083761:-|nuORF;nc|ENSG00000076554|P55327-2|TPD52;nc|ENSG00000076554|P55327|TPD52;nc|ENSG00000076554|P55327-3|TPD52;ENST00000517445.5_1_8:80962678-80964851:-|nuORF;ENST00000522364.5_1_8:80963727-80992703:-|nuORF	nc|ENSG00000076554|P55327-7|TPD52	nc|ENSG00000076554|P55327-7|TPD52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.59014892578125	3	420.590494	1258.74965	-0.30994	-0.00013036	-0.18076	-7.6027E-05	-0.4907	-0.00020638	420.59031141340165	28.036	0.67276	28.037	27.793	28.466	0.0004673					56	23	3	0	0	0	0.20949	2	4831	4831;4881		30.354	21.603	1	415730			46193	12589	26576	26577	56226;56227	56226					0.13062770462920525
SVITQVLNK	9	Unmodified	_SVITQVLNK_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.3030700683594	2	501.303124	1000.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.694	1	45.759	45.259	46.259	0.065048								0	0	0	0.0079895	1	10224	10224		83.429	31.799	1				46194	5913	26577	26578	56228	56228					0.09142315994370165
SVIVQPFSK	9	Unmodified	_SVIVQPFSK_					0	0	0		nc|ENSG00000285253|Q6N043-3|ZNF280D;nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;nc|ENSG00000285253|Q6N043-6|ZNF280D	nc|ENSG00000285253|Q6N043-3|ZNF280D	nc|ENSG00000285253|Q6N043-3|ZNF280D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7926940917969	2	502.792392	1003.57023	0.29224	0.00014693	0.24191	0.00012163	0.53414	0.00026856	502.79241311928143	43.733	0.6766	43.733	43.467	44.143	0					55	24	3	0	0	0	0.048871	1	9635	9635		53.317	20.531	1	1101500			46195	4091	26578	26579	56229	56229					0.06858930965665877
SVIVQPFSK	9	Unmodified	_SVIVQPFSK_					0	0	0		nc|ENSG00000285253|Q6N043-3|ZNF280D;nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;nc|ENSG00000285253|Q6N043-6|ZNF280D	nc|ENSG00000285253|Q6N043-3|ZNF280D	nc|ENSG00000285253|Q6N043-3|ZNF280D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.79248046875	2	502.792392	1003.57023	0.38335	0.00019275	-0.016383	-8.2375E-06	0.36697	0.00018451	502.7923109893165	43.617	0.62266	43.694	43.425	44.048	0.077515					49	22	3	0	0	0	0.016571	1	9582	9582		69.338	29.389	1	1085600			46196	4091	26578	26579	56230	56230					0.06858930965665877
SVIVQPFSK	9	Unmodified	_SVIVQPFSK_					0	0	0		nc|ENSG00000285253|Q6N043-3|ZNF280D;nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;nc|ENSG00000285253|Q6N043-6|ZNF280D	nc|ENSG00000285253|Q6N043-3|ZNF280D	nc|ENSG00000285253|Q6N043-3|ZNF280D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.7925720214844	2	502.792392	1003.57023	0.41679	0.00020956	0.1447	7.2756E-05	0.56149	0.00028231	502.7923826725696	43.558	0.66506	43.642	43.384	44.049	0.083992					56	24	3	0	0	0	0.027957	1	9564	9564		61.09	21.14	1	1141300			46197	4091	26578	26579	56231	56231					0.06858930965665877
SVIWIMAIS	9	Unmodified	_SVIWIMAIS_					0	0	0		ENSG00000241186|ENST00000296145|TDGF1	ENSG00000241186|ENST00000296145|TDGF1	ENSG00000241186|ENST00000296145|TDGF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.29766845703125	2	510.283346	1018.55214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.694	1	40.694	40.194	41.194	0								0	0	0	0.21726	1	8702	8702		16.942	1.0951	1				46198	8532	26579	26580	56232	56232					0.043604727192928294
SVIYKFAKQFW	11	Unmodified	_SVIYKFAKQFW_					0	0	0			REV__nc|ENSG00000290584|Q9P1P4|TAAR3P	REV__nc|ENSG00000290584|Q9P1P4|TAAR3P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.27215576171875	3	472.927329	1415.76016	0.28396	0.00013429	0.89607	0.00042378	1.18	0.00055807	472.9278153513533	33.677	0.54689	33.677	33.393	33.94	0					38	19	3	0	0	0	0.33094	1	6584	6584		7.4771	3.0709	1	250810	+		46199	23249	26580	26581	56233	56233					0.0689079790802225
SVIYKFAKQFW	11	Unmodified	_SVIYKFAKQFW_					0	0	0			REV__nc|ENSG00000290584|Q9P1P4|TAAR3P	REV__nc|ENSG00000290584|Q9P1P4|TAAR3P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.2720642089844	3	472.927329	1415.76016	0.059804	2.8283E-05	1.2677	0.00059952	1.3275	0.0006278	472.9278962227625	33.457	0.47109	33.524	33.328	33.799	0.066704					37	16	3	0	0	0	0.43513	1	6537	6537		6.6235	1.5759	1	245320	+		46200	23249	26580	26581	56234	56234					0.0689079790802225
SVIYKFAKQFW	11	Unmodified	_SVIYKFAKQFW_					0	0	0			REV__nc|ENSG00000290584|Q9P1P4|TAAR3P	REV__nc|ENSG00000290584|Q9P1P4|TAAR3P	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	472.927329	1415.76016	0.059804	2.8283E-05	1.2677	0.00059952	1.3275	0.0006278	472.9278962227625	33.457	0.47109	33.524	33.328	33.799	0.066704	-0.067293	0.0003437	NaN	7.4771	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245320	+		46201	23249	26580	26581							0.0689079790802225
SVKGFWRSLWI	11	Unmodified	_SVKGFWRSLWI_					0	0	0			REV__ENST00000489914.1_1_2:74732213-74732711:-|nuORF	REV__ENST00000489914.1_1_2:74732213-74732711:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.2589111328125	3	460.25919	1377.75574	0.14049	6.4661E-05	-1.7527	-0.00080669	-1.6122	-0.00074203	460.25872846589135	37.78	0.58053	37.878	37.654	38.235	0.097527					63	20	4	0	0	0	0.44351	1	7824	7824		5.5233	1.1171	1	690320	+		46202	21597	26581	26582	56235	56235					0.08197333485122726
SVKKEPVLAQ	10	Unmodified	_SVKKEPVLAQ_					0	0	0		nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214	nc|ENSG00000126883|P35658-2|NUP214	nc|ENSG00000126883|P35658-2|NUP214	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3292846679688	2	549.829506	1097.64446	0.21865	0.00012022	-1.1742	-0.0006456	-0.95553	-0.00052538	550.3294855162918	23.529	1.0379	23.529	23.021	24.058	0					53	35	2	0	0	0	0.39935	1	3549	3549		3.5965	0	1	183920			46203	3299	26582	26583	56236	56236					0.09954274057167822
SVKKVDIA	8	Unmodified	_SVKKVDIA_					0	0	0			REV__nc|ENSG00000139734|Q9NSV4-1|DIAPH3	REV__nc|ENSG00000139734|Q9NSV4-1|DIAPH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.7579345703125	2	430.26601	858.517468	0.08804	3.7881E-05	-0.12453	-5.358E-05	-0.036488	-1.5699E-05	430.2659226799882	35.983	0.45881	36.065	35.849	36.308	0.082359					28	16	2	0	0	0	0.34353	1	7205	7205		2.0598	0	1	303900	+		46204	16005	26583	26584	56237	56237					0.08254972902841473
SVKKWFKQ	8	Unmodified	_SVKKWFKQ_					0	0	0		ENST00000554144.5_1_4:57514888-57516908:-|nuORF	ENST00000554144.5_1_4:57514888-57516908:-|nuORF	ENST00000554144.5_1_4:57514888-57516908:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8063354492188	2	525.808377	1049.6022	0.09071	4.7696E-05	1.0706	0.00056292	1.1613	0.00061062	525.8061632152816	13.629	0.60282	13.53	13.306	13.908	-0.099291					72	21	5	0	0	0	0.32886	1	470	470		21.747	5.8995	1	516700			46205	11831	26584	26585	56238	56238					0.07938343439445816
SVKLWQLP	8	Unmodified	_SVKLWQLP_					0	0	0		ENST00000395784.1_1_5:96271114-96272330:+|nuORF	ENST00000395784.1_1_5:96271114-96272330:+|nuORF	ENST00000395784.1_1_5:96271114-96272330:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8653564453125	2	485.789653	969.564752	-0.049271	-2.3935E-05	-3.3525	-0.0016286	-3.4017	-0.0016525	485.78780094510904	24.872	0.49934	24.84	24.627	25.126	-0.031408					26	16	2	0	0	0	0.34131	1	3916	3916		12.532	1.7076	1	43290			46206	10096	26585	26586	56239	56239					0.07875252173846548
SVKLWQLP	8	Unmodified	_SVKLWQLP_					0	0	0		ENST00000395784.1_1_5:96271114-96272330:+|nuORF	ENST00000395784.1_1_5:96271114-96272330:+|nuORF	ENST00000395784.1_1_5:96271114-96272330:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	485.789653	969.564752	0.11666	5.667E-05	-4.4861	-0.0021793	-4.3694	-0.0021226	485.78738375057276	24.987	0.53185	24.931	24.628	25.16	-0.055931	0.045439	-0.00033898	NaN	12.532	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49547			46207	10096	26585	26586							0.07875252173846548
SVKMRCPAK	9	Unmodified	_SVKMRCPAK_					0	0	0			REV__ENSG00000148513|ENST00000361713|ANKRD30A	REV__ENSG00000148513|ENST00000361713|ANKRD30A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.278564453125	2	510.278072	1018.54159	0.34309	0.00017507	0.2005	0.00010231	0.54359	0.00027738	510.2781794743528	20.259	1.2562	20.149	19.239	20.495	-0.11003					98	44	3	0	0	0	0.33018	1	2536	2536		4.3292	0.38484	1	358930	+		46208	16427	26586	26587	56240	56240					0.03306166793208831
SVKPEKMHLF	10	Unmodified	_SVKPEKMHLF_					0	0	0		ENST00000556529.2_1_12:117014082-117014148:+|nuORF	ENST00000556529.2_1_12:117014082-117014148:+|nuORF	ENST00000556529.2_1_12:117014082-117014148:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.547119140625	3	405.889998	1214.64816	0.040432	1.6411E-05	-0.33577	-0.00013629	-0.29534	-0.00011988	405.8900733085699	33.546	0.16236	33.546	33.484	33.646	0					8	5	2	0	0	0	0.31969	1	6542	6542		5.7834	1.5939	1	46440			46209	11862	26587	26588	56241	56241					0.049426205594045314
SVKQQTYKQI	10	Unmodified	_SVKQQTYKQI_					0	0	0			REV__ENSG00000107518|ENST00000355044|ATRNL1	REV__ENSG00000107518|ENST00000355044|ATRNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.911865234375	3	408.231189	1221.67174	-0.0093004	-3.7967E-06	0.24037	9.8127E-05	0.23107	9.433E-05	408.23121396905134	24.091	0.57063	24.019	23.756	24.327	-0.072559					21	18	2	0	0	0	0.31969	1	3675	3675		5.7834	0	1	41556	+		46210	14554	26588	26589	56242	56242					0.06976757597567484
SVKSVPENLLK	11	Unmodified	_SVKSVPENLLK_					0	0	0		nc|ENSG00000106305|Q13155-2|AIMP2;ENSG00000106305|ENST00000223029|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.54388427734375	3	405.243206	1212.70779	0.021192	8.588E-06	0.39105	0.00015847	0.41224	0.00016706	405.2432541870452	36.121	0.52934	36.121	35.856	36.385	0					44	19	3	0	0	0	0.32149	1	7265	7265		21.241	15.007	1	423190			46211	2070	26589	26590	56243	56243					0.10994214774405009
SVKSVPENLLK	11	Unmodified	_SVKSVPENLLK_					0	0	0		nc|ENSG00000106305|Q13155-2|AIMP2;ENSG00000106305|ENST00000223029|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.81201171875	2	607.36117	1212.70779	0.54207	0.00032923	-0.0051732	-3.142E-06	0.53689	0.00032609	607.3613244635087	36.13	0.45011	36.13	35.882	36.332	0					22	16	2	0	0	0	0.33182	1	7250	7250		5.4027	2.1214	1	135070			46212	2070	26589	26590	56244	56244					0.10994214774405009
SVKSVPENLLK	11	Unmodified	_SVKSVPENLLK_					0	0	0		nc|ENSG00000106305|Q13155-2|AIMP2;ENSG00000106305|ENST00000223029|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5437927246094	3	405.243206	1212.70779	0.028188	1.1423E-05	0.56633	0.0002295	0.59452	0.00024092	405.2434601269812	36.005	0.73833	36.088	35.823	36.561	0.082359					59	26	4	0	0	0	0.27286	1	7231	7231		25.438	14.91	1	418630			46213	2070	26589	26590	56245	56245					0.10994214774405009
SVKSVPENLLK	11	Unmodified	_SVKSVPENLLK_					0	0	0		nc|ENSG00000106305|Q13155-2|AIMP2;ENSG00000106305|ENST00000223029|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5440368652344	3	405.243206	1212.70779	0.12556	5.0882E-05	0.45699	0.00018519	0.58255	0.00023608	405.24334580626095	36.004	0.60973	36.091	35.79	36.4	0.08625					48	21	3	0	0	0	0.2115	1	7239	7239		33.593	23.066	1	417310			46214	2070	26589	26590	56246	56246					0.10994214774405009
SVKSYLFRQL	10	Unmodified	_SVKSYLFRQL_					0	0	0			REV__ENST00000580395.1_1_17:26945751-26946955:-|nuORF	REV__ENST00000580395.1_1_17:26945751-26946955:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2243957519531	3	414.239796	1239.69756	0.69209	0.00028669	-1.0104	-0.00041856	-0.31834	-0.00013187	414.23924338339106	48.219	0.42296	48.267	48.049	48.472	0.047523					43	15	4	0	0	0	0.31538	1	11067	11067		8.9762	0	1	714960	+		46215	22480	26590	26591	56247	56247					0.08729651839848884
SVKYSVQLEDR	11	Unmodified	_SVKYSVQLEDR_					0	0	0		nc|ENSG00000130997|Q7Z5Q5-3|POLN;ENST00000515357.5_1_4:2158125-2230958:-|nuORF;ENSG00000130997|ENST00000511885|POLN	nc|ENSG00000130997|Q7Z5Q5-3|POLN	nc|ENSG00000130997|Q7Z5Q5-3|POLN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2444763183594	3	441.90162	1322.68303	-0.74497	-0.0003292	1.325	0.00058552	0.58003	0.00025632	441.90219586625824	34.806	0.38391	34.883	34.704	35.088	0.077381					13	13	2	0	0	0	0.33169	1	6934	6934		3.8459	0.25323	1	42918			46216	3534	26591	26592	56248	56248					0.03459534901048755
SVLAKRPQRPS	11	Unmodified	_SVLAKRPQRPS_					0	0	0			REV__ENSG00000050327|ENST00000056217|ARHGEF5	REV__ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8685302734375	2	619.870028	1237.7255	0.16663	0.00010329	-0.67874	-0.00042073	-0.5121	-0.00031744	619.8689631731354	92.921	1.0228	92.921	92.557	93.58	0					123	87	2	0	0	0	0.47742	1	24899	24899		1.0715	0.10919	1	134500	+		46217	13562	26592	26593	56249	56249					0.11614974819917734
SVLAKRPQRPS	11	Unmodified	_SVLAKRPQRPS_					0	0	0			REV__ENSG00000050327|ENST00000056217|ARHGEF5	REV__ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.869384765625	2	619.870028	1237.7255	-0.054767	-3.3948E-05	-0.14606	-9.0541E-05	-0.20083	-0.00012449	619.8694778459851	97.454	0.74741	97.525	97.131	97.879	0.070465					192	80	3	0	0	0	0.46475	1	25999	25999		2.7352	1.0826	1	259430	+		46218	13562	26592	26593	56250	56250					0.11614974819917734
SVLAKRPQRPS	11	Unmodified	_SVLAKRPQRPS_					0	0	0			REV__ENSG00000050327|ENST00000056217|ARHGEF5	REV__ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8694458007812	2	619.870028	1237.7255	0.29543	0.00018313	-0.1832	-0.00011356	0.11223	6.9568E-05	619.8690396100932	94.564	1.5426	94.562	93.798	95.341	-0.0020142					222	130	2	0	0	0	0.46475	1	25264	25264		2.7352	0.89096	1	200390	+		46219	13562	26592	26593	56251	56251					0.11614974819917734
SVLAKRPQRPS	11	Unmodified	_SVLAKRPQRPS_					0	0	0			REV__ENSG00000050327|ENST00000056217|ARHGEF5	REV__ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3726806640625	2	619.870028	1237.7255	0.20348	0.00012613	-0.46722	-0.00028961	-0.26374	-0.00016348	619.8692710448544	97.491	1.1283	97.485	96.973	98.101	-0.0055466					232	118	3	0	0	0	0.46475	1	26000	26000		2.7352	1.2533	1	379940	+		46220	13562	26592	26593	56252	56252					0.11614974819917734
SVLAKRPQRPS	11	Unmodified	_SVLAKRPQRPS_					0	0	0			REV__ENSG00000050327|ENST00000056217|ARHGEF5	REV__ENSG00000050327|ENST00000056217|ARHGEF5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.86865234375	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.338	1	93.338	92.838	93.838	-0.00051117								0	0	0	0.32191	1	24853	24853		14.405	2.1647	1		+		46221	13562	26592	26593	56253	56253					0.11614974819917734
SVLAKRPQRPS	11	Unmodified	_SVLAKRPQRPS_					0	0	0			REV__ENSG00000050327|ENST00000056217|ARHGEF5	REV__ENSG00000050327|ENST00000056217|ARHGEF5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8696899414062	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.96	1	101.95	101.45	102.45	-0.0033646								0	0	0	0.36685	1	27199	27199		4.5289	0.58447	1		+		46222	13562	26592	26593	56254	56254					0.11614974819917734
SVLALPLLTR	10	Unmodified	_SVLALPLLTR_					0	0	0		ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.8356323242188	2	541.850242	1081.68593	0.49846	0.00027009	0.11045	5.9849E-05	0.60891	0.00032994	541.8502369375983	70.426	0.4998	70.426	70.157	70.657	0					30	17	3	0	0	0	0.24437	1	17795	17795		27.223	7.9662	1	188940			46223	2716	26593	26594	56255	56255					0.14835454816511628
SVLALPLLTR	10	Unmodified	_SVLALPLLTR_					0	0	0		ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	541.850242	1081.68593	0.53845	0.00029176	-0.17899	-9.6985E-05	0.35946	0.00019477	541.8502321713244	70.315	0.58898	70.379	70.158	70.747	0.063858	-0.036039	-4.2805E-05	NaN	27.223	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192330			46224	2716	26593	26594							0.14835454816511628
SVLALPLLTR	10	Unmodified	_SVLALPLLTR_					0	0	0		ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	ENSG00000116237|ENST00000343813|ICMT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.850242	1081.68593	0.61081	0.00033097	-0.25096	-0.00013599	0.35984	0.00019498	541.8501171644506	70.465	0.5558	70.44	70.134	70.69	-0.024872	0.024711	-0.00012081	NaN	27.223	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185710			46225	2716	26593	26594							0.14835454816511628
SVLAQQAAK	9	Unmodified	_SVLAQQAAK_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2666931152344	2	458.266542	914.51853	-0.12897	-5.9103E-05	0.34202	0.00015674	0.21305	9.7632E-05	458.26661350790886	19.036	0.78419	19.036	18.79	19.574	0					61	27	3	0	0	0	0.01909	2	2136	2090;2136		65.474	40.074	1	281890			46226	3765	26594	26595	56256;56257	56257					0.05785187271749237
SVLAQQAAK	9	Unmodified	_SVLAQQAAK_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.2663879394531	2	458.266542	914.51853	-0.033864	-1.5519E-05	0.22746	0.00010424	0.19359	8.8717E-05	458.26651904453695	19.179	0.85631	19.063	18.785	19.642	-0.11592					61	29	3	0	0	0	0.032589	1	2183	2183		59.368	35.348	1	314980			46227	3765	26594	26595	56258	56258					0.05785187271749237
SVLAQQAAK	9	Unmodified	_SVLAQQAAK_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2664794921875	2	458.266542	914.51853	-0.0020294	-9.3003E-07	0.14434	6.6145E-05	0.14231	6.5215E-05	458.2665095969903	19.114	0.80333	19.058	18.848	19.651	-0.056061					58	27	3	0	0	0	0.022205	2	2123	2123;2170		63.227	38.346	1	305480			46228	3765	26594	26595	56259;56260	56259					0.05785187271749237
SVLAQVAEQF	10	Unmodified	_SVLAQVAEQF_					0	0	0		ENST00000495343.5_1_21:44151932-44153535:+|nuORF;ENST00000467162.5_1_21:44106337-44153535:+|nuORF;nc|ENSG00000160191|O76083-3|PDE9A;nc|ENSG00000160191|O76083-16|PDE9A;ENST00000470987.5_1_21:44117526-44195400:+|nuORF;nc|ENSG00000160191|O76083-6|PDE9A;nc|ENSG00000160191|O76083-8|PDE9A;nc|ENSG00000160191|O76083-13|PDE9A;nc|ENSG00000160191|O76083-2|PDE9A;nc|ENSG00000160191|O76083-14|PDE9A;nc|ENSG00000160191|O76083-15|PDE9A;ENSG00000160191|ENST00000291539|PDE9A	ENST00000495343.5_1_21:44151932-44153535:+|nuORF	ENST00000495343.5_1_21:44151932-44153535:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8345336914062	2	546.290214	1090.56587	0.7335	0.00040071	1.0871	0.00059388	1.8206	0.00099458	546.2917099512877	64.411	0.65201	64.504	64.334	64.986	0.09288					34	23	2	0	0	0	0.28569	1	16061	16061		20.415	4.5674	1	245200			46229	5442	26595	26596	56261	56261					0.02421421752092101
SVLASGLLLL	10	Unmodified	_SVLASGLLLL_					0	0	0			REV__ENST00000420010.6_1_16:84440201-84449139:+|nuORF	REV__ENST00000420010.6_1_16:84440201-84449139:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.3183898925781	2	493.318243	984.621933	0.38112	0.00018801	0.29749	0.00014676	0.6786	0.00033477	493.3182768031063	68.136	1.1349	68.136	67.842	68.977	0					109	41	4	0	0	0	0.023345	1	17208	17208		68.081	12.578	1	3900400	+		46230	20846	26596	26597	56262	56262					0.12900674659567812
SVLASGLLLL	10	Unmodified	_SVLASGLLLL_					0	0	0			REV__ENST00000420010.6_1_16:84440201-84449139:+|nuORF	REV__ENST00000420010.6_1_16:84440201-84449139:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.3182067871094	2	493.318243	984.621933	0.39424	0.00019448	0.211	0.00010409	0.60524	0.00029857	493.3182433453047	68.162	1.3483	68.143	67.836	69.184	-0.019157					102	47	4	0	0	0	0.051528	1	17196	17196		58.679	3.1761	1	3702000	+		46231	20846	26596	26597	56263	56263					0.12900674659567812
SVLAWRSGRKG	11	Unmodified	_SVLAWRSGRKG_					0	0	0		ENST00000360458.5_1_X:102940171-102942971:-|nuORF	ENST00000360458.5_1_X:102940171-102942971:-|nuORF	ENST00000360458.5_1_X:102940171-102942971:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9034729003906	3	406.235156	1215.68364	-0.46803	-0.00019013	0.2504	0.00010172	-0.21763	-8.841E-05	406.23512684658147	25.204	0.76328	25.173	24.862	25.626	-0.031408					42	26	2	0	0	0	0.33085	1	4039	4039		5.5233	0	1	87192			46232	9680	26597	26598	56264	56264					0.08442419131392853
SVLAYSFSR	9	Unmodified	_SVLAYSFSR_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000590244.1_1_17:58543761-58603427:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.27197265625	2	515.271824	1028.5291	0.58496	0.00030141	-0.49269	-0.00025387	0.092265	4.7542E-05	515.271460968496	47.891	0.55405	47.891	47.38	47.934	0					28	19	2	0	0	0	0.011693	1	10885	10885		76.825	36.875	1	1450800			46233	768	26598	26599	56265	56265					0.015971699261854155
SVLAYSFSR	9	Unmodified	_SVLAYSFSR_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000590244.1_1_17:58543761-58603427:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2724609375	2	515.271824	1028.5291	0.56357	0.00029039	-0.29825	-0.00015368	0.26531	0.00013671	515.2715732853923	47.75	0.5665	47.797	47.456	48.022	0.047523					29	20	2	0	0	0	0.0073901	1	10846	10846		83.429	43.479	1	1059900			46234	768	26598	26599	56266	56266					0.015971699261854155
SVLAYSFSR	9	Unmodified	_SVLAYSFSR_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000590244.1_1_17:58543761-58603427:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2720947265625	2	515.271824	1028.5291	0.45832	0.00023616	-0.29505	-0.00015203	0.16327	8.4127E-05	515.271518894013	47.743	0.39468	47.786	47.48	47.875	0.04332					24	14	2	0	0	0	0.0073901	1	10829	10829		83.429	35.68	1	1293000			46235	768	26598	26599	56267	56267					0.015971699261854155
SVLCEVNWVSV	11	Unmodified	_SVLCEVNWVSV_					0	0	0		nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000590884.5_1_18:43437816-43458370:-|nuORF;ENST00000585906.5_1_18:43437816-43497657:-|nuORF	nc|ENSG00000152223|Q9HCE0-2|EPG5	nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2095642089844	3	412.209396	1233.60636	0.20344	8.386E-05	-0.81235	-0.00033486	-0.60891	-0.000251	412.20940410977414	45.757	1.9324	45.757	44.771	46.703	0					140	70	4	0	0	0	0.44088	1	10242	10242		5.8681	3.1329	1	644170			46236	5007	26599	26600	56268	56268					-0.0010997991980730148
SVLCEVNWVSV	11	Unmodified	_SVLCEVNWVSV_					0	0	0		nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000590884.5_1_18:43437816-43458370:-|nuORF;ENST00000585906.5_1_18:43437816-43497657:-|nuORF	nc|ENSG00000152223|Q9HCE0-2|EPG5	nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.20965576171875	3	412.209396	1233.60636	0.32605	0.0001344	-0.75779	-0.00031237	-0.43174	-0.00017797	412.2094216905257	45.608	2.0935	45.668	44.73	46.824	0.059834					159	75	4	0	0	0	0.45629	1	10121	10121		3.8459	0.52627	1	927580			46237	5007	26599	26600	56269	56269					-0.0010997991980730148
SVLCPCVMECK	11	Unmodified	_SVLCPCVMECK_					0	0	0		ENST00000398125.5_1_4:2930271-2930364:+|nuORF	ENST00000398125.5_1_4:2930271-2930364:+|nuORF	ENST00000398125.5_1_4:2930271-2930364:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.8878173828125	3	404.514557	1210.52184	-0.20598	-8.3322E-05	0.55508	0.00022454	0.3491	0.00014121	404.51493909855657	16.429	0.80255	16.429	16.123	16.925	0					82	27	5	0	0	0	0.33255	1	1270	1270		1.2148	0	1	464840			46238	10156	26600	26601	56270	56270					-0.0749971332406858
SVLCPDWQRCL	11	Unmodified	_SVLCPDWQRCL_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.54620361328125	3	440.546014	1318.61621	0.21143	9.3143E-05	0.049452	2.1786E-05	0.26088	0.00011493	440.5460307423103	26.896	1.1569	26.884	26.595	27.752	-0.011562					95	40	3	0	0	0	0.38765	1	4453	4453		12.856	12.856	1	2000100	+		46239	14813	26601	26602	56271	56271					-0.0303511518607138
SVLCWGELL	9	Unmodified	_SVLCWGELL_					0	0	0		ENST00000543740.6_1_12:104345303-104359310:-|nuORF;ENST00000552460.1_1_12:104345303-104349535:-|nuORF	ENST00000543740.6_1_12:104345303-104359310:-|nuORF	ENST00000543740.6_1_12:104345303-104359310:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2655334472656	2	510.265153	1018.51575	0.56586	0.00028874	0.34513	0.00017611	0.91098	0.00046484	510.2653440672887	50.822	1.155	50.831	50.511	51.666	0.0095634					74	43	2	0	0	0	0.20344	1	11826	11826		23.148	23.148	1	765070			46240	11745	26602	26603	56272	56272					0.007235958225919603
SVLDDKLVFVK	11	Unmodified	_SVLDDKLVFVK_					0	0	0		ENST00000426898.2_1_12:45610123-45776982:+|nuORF;nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6	ENST00000426898.2_1_12:45610123-45776982:+|nuORF	ENST00000426898.2_1_12:45610123-45776982:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.2698974609375	2	631.871371	1261.72819	0.72282	0.00045673	-1.5192	-0.00095991	-0.79633	-0.00050318	631.8700228295583	54.743	0.36777	54.743	54.496	54.864	0					19	13	2	0	0	0	0.32774	1	13049	13049		13.519	3.9747	1	219370			46241	6963	26603	26604	56273	56273					0.10779385434216238
SVLDDKLVFVK	11	Unmodified	_SVLDDKLVFVK_					0	0	0		ENST00000426898.2_1_12:45610123-45776982:+|nuORF;nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6	ENST00000426898.2_1_12:45610123-45776982:+|nuORF	ENST00000426898.2_1_12:45610123-45776982:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.2698364257812	2	631.871371	1261.72819	0.60661	0.0003833	-0.57561	-0.00036371	0.031007	1.9592E-05	631.8706359461004	54.736	0.29861	54.799	54.616	54.915	0.063202					21	10	3	0	0	0	0.3232	1	13019	13019		20.871	14.679	1	243230			46242	6963	26603	26604	56274	56274					0.10779385434216238
SVLDDKLVFVK	11	Unmodified	_SVLDDKLVFVK_					0	0	0		ENST00000426898.2_1_12:45610123-45776982:+|nuORF;nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6	ENST00000426898.2_1_12:45610123-45776982:+|nuORF	ENST00000426898.2_1_12:45610123-45776982:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	631.871371	1261.72819	0.78098	0.00049348	-0.9389	-0.00059326	-0.15792	-9.9784E-05	631.8706716951916	54.846	0.35081	54.83	54.655	55.006	-0.015923	0.039386	2.1389E-05	NaN	20.871	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253080			46243	6963	26603	26604							0.10779385434216238
SVLDKLSKS	9	Unmodified	_SVLDKLSKS_					0	0	0			REV__ENST00000469356.3_1_17:17720899-17721766:-|nuORF	REV__ENST00000469356.3_1_17:17720899-17721766:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7875061035156	2	488.787307	975.560061	-0.05782	-2.8262E-05	0.2547	0.00012449	0.19688	9.6231E-05	488.7873381461712	24.968	0.55558	24.936	24.709	25.265	-0.031408					41	18	3	0	0	0	0.14786	1	3949	3949		31.268	0	1	295760	+		46244	13758	26604	26605	56275	56275					0.0713032324043752
SVLDKSLTK	9	Unmodified	_SVLDKSLTK_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ;ENST00000578938.1_1_17:65172688-65184471:-|nuORF	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7948303222656	2	495.795132	989.575711	0.23976	0.00011887	-0.61201	-0.00030343	-0.37224	-0.00018456	495.79475405384306	25.785	0.78781	25.785	25.562	26.35	0					43	27	3	0	0	0	0.063898	1	4137	4137		47.732	16.464	1	417400			46245	8057	26605	26606	56276	56276					0.08050609757469829
SVLDKSLTK	9	Unmodified	_SVLDKSLTK_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ;ENST00000578938.1_1_17:65172688-65184471:-|nuORF	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.79486083984375	2	495.795132	989.575711	0.15738	7.8027E-05	-0.5354	-0.00026545	-0.37803	-0.00018742	495.7947489443752	25.81	0.75858	25.771	25.531	26.29	-0.038671					44	26	3	0	0	0	0.018042	1	4159	4159		67.081	13.677	1	490850			46246	8057	26605	26606	56277	56277					0.08050609757469829
SVLDLSVHK	9	Unmodified	_SVLDLSVHK_					0	0	0		nc|ENSG00000116731|Q13029-3|PRDM2;ENSG00000116731|ENST00000311066|PRDM2;nc|ENSG00000116731|Q13029-5|PRDM2;PRDM2|p.S1549Hfs*15|1|0.24|ENSG00000116731|chr1:13782440-13782440|T/-|frameshift_variant;nc|ENSG00000116731|Q13029-2|PRDM2	nc|ENSG00000116731|Q13029-3|PRDM2	nc|ENSG00000116731|Q13029-3|PRDM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2877502441406	2	499.287474	996.560395	0.72699	0.00036298	-0.40618	-0.0002028	0.32081	0.00016018	499.2872373034121	37.161	0.77709	37.161	36.902	37.679	0					49	27	3	0	0	0	0.04299	1	7616	7616		55.503	26.421	1	313500			46247	2746	26606	26607	56278	56278					0.061977429602734446
SVLDLSVHK	9	Unmodified	_SVLDLSVHK_					0	0	0		nc|ENSG00000116731|Q13029-3|PRDM2;ENSG00000116731|ENST00000311066|PRDM2;nc|ENSG00000116731|Q13029-5|PRDM2;PRDM2|p.S1549Hfs*15|1|0.24|ENSG00000116731|chr1:13782440-13782440|T/-|frameshift_variant;nc|ENSG00000116731|Q13029-2|PRDM2	nc|ENSG00000116731|Q13029-3|PRDM2	nc|ENSG00000116731|Q13029-3|PRDM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2875671386719	2	499.287474	996.560395	0.44605	0.00022271	-0.22605	-0.00011286	0.22001	0.00010985	499.28718634522284	37.039	0.51578	37.127	36.868	37.384	0.08741					39	18	3	0	0	0	0.038291	1	7578	7578		57.249	28.168	1	388590			46248	2746	26606	26607	56279	56279					0.061977429602734446
SVLDLSVHK	9	Unmodified	_SVLDLSVHK_					0	0	0		nc|ENSG00000116731|Q13029-3|PRDM2;ENSG00000116731|ENST00000311066|PRDM2;nc|ENSG00000116731|Q13029-5|PRDM2;PRDM2|p.S1549Hfs*15|1|0.24|ENSG00000116731|chr1:13782440-13782440|T/-|frameshift_variant;nc|ENSG00000116731|Q13029-2|PRDM2	nc|ENSG00000116731|Q13029-3|PRDM2	nc|ENSG00000116731|Q13029-3|PRDM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2877502441406	2	499.287474	996.560395	0.58183	0.0002905	-0.25899	-0.00012931	0.32284	0.00016119	499.2872829460393	37.001	0.60175	37.094	36.846	37.448	0.093014					43	21	3	0	0	0	0.064268	1	7569	7569		47.594	24.858	1	332620			46249	2746	26606	26607	56280	56280					0.061977429602734446
SVLDSFLKY	9	Unmodified	_SVLDSFLKY_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.290283203125	2	536.289682	1070.56481	0.55621	0.00029829	0.22596	0.00012118	0.78217	0.00041947	536.2901081344882	71.998	2.1404	71.998	71.521	73.661	0					284	77	6	0	0	0	0.00010125	4	18317	18285;18317;18360;18405		140.63	81.954	1	16195000			46250	1868	26607	26608	56281;56282;56283;56284	56282					0.0323520738318166
SVLDSFLKY	9	Unmodified	_SVLDSFLKY_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2903442382812	2	536.289682	1070.56481	0.47066	0.00025241	0.38282	0.0002053	0.85348	0.00045771	536.2902676945151	71.994	1.637	72.051	71.537	73.174	0.056572					252	59	6	0	0	0	2.5511E-05	3	18305	18263;18305;18347		152.89	91.528	1	17033000			46251	1868	26607	26608	56285;56286;56287	56286					0.0323520738318166
SVLDSFLKY	9	Unmodified	_SVLDSFLKY_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2904052734375	2	536.289682	1070.56481	0.57063	0.00030602	0.32003	0.00017163	0.89066	0.00047765	536.2902107271698	72.104	1.9784	72.077	71.315	73.293	-0.027275					246	70	6	0	0	0	0.00010125	3	18334	18296;18334;18375		140.63	78.06	1	17294000			46252	1868	26607	26608	56288;56289;56290	56289					0.0323520738318166
SVLDVIKGRTE	11	Unmodified	_SVLDVIKGRTE_					0	0	0			REV__ENSG00000100665|ENST00000557004|SERPINA4	REV__ENSG00000100665|ENST00000557004|SERPINA4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8477172851562	2	608.848427	1215.6823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.377	1	81.377	80.877	81.877	0								0	0	0	0.36685	1	21195	21195		4.5289	0.93237	1		+		46253	14222	26608	26609	56291	56291					0.08308740252027746
SVLDYFSER	9	Unmodified	_SVLDYFSER_					0	0	0		ENSG00000133997|ENST00000256379|MED6;nc|ENSG00000133997|O75586-2|MED6;ENST00000556044.5_1_14:71060086-71067354:-|nuORF;ENST00000556423.1_1_14:71063310-71067354:-|nuORF;ENST00000553611.5_1_14:71060082-71067354:-|nuORF;ENST00000554870.5_1_14:71059985-71067354:-|nuORF;ENST00000556495.5_1_14:71059591-71067354:-|nuORF;nc|ENSG00000133997|O75586-3|MED6	ENSG00000133997|ENST00000256379|MED6	ENSG00000133997|ENST00000256379|MED6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.271728515625	2	558.272021	1114.52949	-0.010267	-5.7319E-06	0.80276	0.00044816	0.79249	0.00044243	558.2718965151993	60.19	1.1221	60.19	59.728	60.851	0					135	40	5	0	0	0	4.216E-07	3	14722	14675;14722;14792		163.69	84.959	1	6150000			46254	3744	26609	26610	56292;56293;56294	56293					-0.02319455144629501
SVLDYFSER	9	Unmodified	_SVLDYFSER_					0	0	0		ENSG00000133997|ENST00000256379|MED6;nc|ENSG00000133997|O75586-2|MED6;ENST00000556044.5_1_14:71060086-71067354:-|nuORF;ENST00000556423.1_1_14:71063310-71067354:-|nuORF;ENST00000553611.5_1_14:71060082-71067354:-|nuORF;ENST00000554870.5_1_14:71059985-71067354:-|nuORF;ENST00000556495.5_1_14:71059591-71067354:-|nuORF;nc|ENSG00000133997|O75586-3|MED6	ENSG00000133997|ENST00000256379|MED6	ENSG00000133997|ENST00000256379|MED6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.27197265625	2	558.272021	1114.52949	-0.2575	-0.00014376	1.006	0.00056163	0.74852	0.00041788	558.2720714752022	60.082	1.0352	60.177	59.661	60.696	0.095089					124	37	5	0	0	0	3.4202E-05	3	14647	14647;14692;14748		151.48	82.375	1	5824100			46255	3744	26609	26610	56295;56296;56297	56295					-0.02319455144629501
SVLDYFSER	9	Unmodified	_SVLDYFSER_					0	0	0		ENSG00000133997|ENST00000256379|MED6;nc|ENSG00000133997|O75586-2|MED6;ENST00000556044.5_1_14:71060086-71067354:-|nuORF;ENST00000556423.1_1_14:71063310-71067354:-|nuORF;ENST00000553611.5_1_14:71060082-71067354:-|nuORF;ENST00000554870.5_1_14:71059985-71067354:-|nuORF;ENST00000556495.5_1_14:71059591-71067354:-|nuORF;nc|ENSG00000133997|O75586-3|MED6	ENSG00000133997|ENST00000256379|MED6	ENSG00000133997|ENST00000256379|MED6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2719116210938	2	558.272021	1114.52949	0.15175	8.4718E-05	0.75093	0.00041922	0.90268	0.00050394	558.271881192207	60.223	1.147	60.211	59.739	60.886	-0.011486					134	41	5	0	0	0	4.216E-07	3	14668	14668;14716;14768		163.69	84.959	1	5609300			46256	3744	26609	26610	56298;56299;56300	56298					-0.02319455144629501
SVLEFLSQK	9	Unmodified	_SVLEFLSQK_					0	0	0		ENSG00000076650|ENST00000170564|GPATCH1	ENSG00000076650|ENST00000170564|GPATCH1	ENSG00000076650|ENST00000170564|GPATCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7955322265625	2	525.795132	1049.57571	0.58366	0.00030689	0.083533	4.3921E-05	0.66719	0.00035081	525.795121261158	58.708	0.66458	58.708	58.468	59.133	0					38	22	3	0	0	0	0.001957	1	14251	14251		110.55	30.956	1	662600			46257	1067	26610	26611	56301	56301					0.05290609757457787
SVLEFLSQK	9	Unmodified	_SVLEFLSQK_					0	0	0		ENSG00000076650|ENST00000170564|GPATCH1	ENSG00000076650|ENST00000170564|GPATCH1	ENSG00000076650|ENST00000170564|GPATCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.794921875	2	525.795132	1049.57571	0.51876	0.00027276	0.079291	4.1691E-05	0.59806	0.00031445	525.794949827787	58.481	0.71081	58.572	58.366	59.077	0.091301					49	24	3	0	0	0	0.0013924	1	14211	14211		117.76	38.164	1	434630			46258	1067	26610	26611	56302	56302					0.05290609757457787
SVLEFLSQK	9	Unmodified	_SVLEFLSQK_					0	0	0		ENSG00000076650|ENST00000170564|GPATCH1	ENSG00000076650|ENST00000170564|GPATCH1	ENSG00000076650|ENST00000170564|GPATCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7953491210938	2	525.795132	1049.57571	0.64813	0.00034078	0.24791	0.00013035	0.89604	0.00047113	525.7952457320692	58.774	0.59026	58.76	58.523	59.113	-0.014267					39	20	3	0	0	0	0.00051734	1	14262	14262		128.93	39.532	1	620200			46259	1067	26610	26611	56303	56303					0.05290609757457787
SVLEFLSQKDK	11	Unmodified	_SVLEFLSQKDK_					0	0	0		ENSG00000076650|ENST00000170564|GPATCH1	ENSG00000076650|ENST00000170564|GPATCH1	ENSG00000076650|ENST00000170564|GPATCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.9060974121094	3	431.906482	1292.69762	0.088151	3.8073E-05	-0.89928	-0.0003884	-0.81113	-0.00035033	431.90616277764326	40.646	1.0397	40.738	40.474	41.513	0.09267					137	38	5	0	0	0	0.41892	1	8696	8696		8.7518	0	1	8517700			46260	1067	26611	26612	56304	56304					0.06297607049168619
SVLEIHSQK	9	Unmodified	_SVLEIHSQK_					0	0	0		nc|ENSG00000048649|Q96T23-3|RSF1;nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1	nc|ENSG00000048649|Q96T23-3|RSF1	nc|ENSG00000048649|Q96T23-3|RSF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2101440429688	2	520.790381	1039.56621	0.16844	8.7722E-05	-0.23678	-0.00012331	-0.06834	-3.5591E-05	520.7901619005854	23.041	0.6169	22.954	22.736	23.353	-0.087608					25	21	2	0	0	0	0.25689	1	3307	3307		7.609	0.88579	1	41518			46261	643	26612	26613	56305	56305					0.048008414719333814
SVLEILYPR	9	Unmodified	_SVLEILYPR_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2664794921875	2	545.318774	1088.623	0.68305	0.00037248	-2.8334	-0.0015451	-2.1503	-0.0011726	545.3170146037754	63.925	0.9818	63.925	63.665	64.647	0					97	35	4	0	0	0	0.16853	1	15969	15969		31.268	10.815	1	919740			46262	1455	26613	26614	56306	56306					0.08222889028479585
SVLEILYPR	9	Unmodified	_SVLEILYPR_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2662963867188	2	545.318774	1088.623	0.74175	0.00040449	-2.9056	-0.0015845	-2.1638	-0.00118	545.3169064882208	63.82	0.92971	63.913	63.678	64.608	0.09288					100	33	4	0	0	0	0.16853	1	15927	15927		38.176	23.337	1	909880			46263	1455	26613	26614	56307	56307					0.08222889028479585
SVLEKVRI	8	Unmodified	_SVLEKVRI_					0	0	0			REV__nc|ENSG00000083223|Q5VYS8-2|TUT7	REV__nc|ENSG00000083223|Q5VYS8-2|TUT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7820129394531	2	472.300384	942.586216	0.036957	1.7455E-05	1.4361	0.00067825	1.473	0.00069571	472.30091429447685	51.943	0.45936	51.942	51.656	52.115	-0.00081253					35	16	3	0	0	0	0.30795	1	12198	12198		24.021	0	1	445070	+		46264	13932	26614	26615	56308	56308					0.112626372025602
SVLEKVSKFEQ	11	Unmodified	_SVLEKVSKFEQ_					0	0	0		ENST00000486758.5_1_4:77631429-77663226:+|nuORF;ENSG00000138771|ENST00000296043|SHROOM3	ENST00000486758.5_1_4:77631429-77663226:+|nuORF	ENST00000486758.5_1_4:77631429-77663226:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.9063720703125	3	431.906482	1292.69762	-0.23414	-0.00010113	-0.5686	-0.00024558	-0.80274	-0.00034671	431.9062983491952	40.902	1.0048	40.902	40.55	41.555	0					130	36	5	0	0	0	0.35571	1	8747	8747		17.049	4.821	1	7008700			46265	4193	26615	26616	56309	56309					0.06297607049214093
SVLENFVGR	9	Unmodified	_SVLENFVGR_					0	0	0		nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.77740478515625	2	510.777274	1019.53999	0.7744	0.00039554	0.84031	0.00042921	1.6147	0.00082475	510.77734784511557	50.691	0.67824	50.691	50.461	51.139	0					41	24	3	0	0	0	0.00078391	1	11773	11773		125.53	75.596	1	1053800			46266	1141;8018	26616	26617	56310	56310					0.031005723004795982
SVLENFVGR	9	Unmodified	_SVLENFVGR_					0	0	0		nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.7775573730469	2	510.777274	1019.53999	0.69818	0.00035662	0.88926	0.00045422	1.5874	0.00081083	510.7773522856144	50.69	0.73365	50.735	50.461	51.195	0.044891					37	26	2	0	0	0	0.00078391	1	11791	11791		125.53	70.756	1	923790			46267	1141;8018	26616	26617	56311	56311					0.031005723004795982
SVLENFVGR	9	Unmodified	_SVLENFVGR_					0	0	0		nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000106976|Q05193-5|DNM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.7774658203125	2	510.777274	1019.53999	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.729	1	50.739	50.239	51.239	0.0095634								0	0	0	4.8182E-07	1	11777	11777		136.39	90.371	1				46268	1141;8018	26616	26617	56312	56312					0.031005723004795982
SVLENTPGP	9	Unmodified	_SVLENTPGP_					0	0	0		MACROD2|p.D402V|1|0.34|ENSG00000172264|chr20:16041252-16041252|A/T|missense_variant	MACROD2|p.D402V|1|0.34|ENSG00000172264|chr20:16041252-16041252|A/T|missense_variant	MACROD2|p.D402V|1|0.34|ENSG00000172264|chr20:16041252-16041252|A/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7666931152344	2	457.234907	912.455261	-0.022561	-1.0316E-05	0.11474	5.2465E-05	0.092182	4.2149E-05	457.2346702855706	16.365	0.39194	16.365	16.214	16.606	0					18	13	2	0	0	0	0.25323	1	1298	1298		6.2058	0	1	31307			46269	12522	26617	26618	56313	56313					-0.004467982361347822
SVLEPPLFLK	10	Unmodified	_SVLEPPLFLK_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69747892-69752485:-|nuORF;nc|ENSG00000148634|Q5GLZ8-3|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.8447265625	2	571.844625	1141.6747	0.23906	0.0001367	-1.1488	-0.00065695	-0.90977	-0.00052025	571.8449186666703	68.01	2.0892	68.01	67.338	69.428	0					214	75	5	0	0	0	0.0047411	2	17110	17051;17110		93.166	39.333	1	15591000			46270	4821	26618	26619	56314;56315	56315					0.10952632722364797
SVLEPPLFLK	10	Unmodified	_SVLEPPLFLK_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69747892-69752485:-|nuORF;nc|ENSG00000148634|Q5GLZ8-3|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.8445434570312	2	571.844625	1141.6747	0.46406	0.00026537	-1.5464	-0.00088432	-1.0824	-0.00061895	571.8447845158104	67.93	2.4272	68.008	67.326	69.753	0.078041					183	87	5	0	0	0	0.0040945	2	17073	17073;17079		96.936	43.103	1	17280000			46271	4821	26618	26619	56316;56317	56316					0.10952632722364797
SVLEPPLFLK	10	Unmodified	_SVLEPPLFLK_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69747892-69752485:-|nuORF;nc|ENSG00000148634|Q5GLZ8-3|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.8445434570312	2	571.844625	1141.6747	0.24932	0.00014257	-1.1615	-0.00066421	-0.91219	-0.00052163	571.8447965349748	67.986	2.1716	67.97	67.323	69.494	-0.016296					187	76	5	0	0	0	0.0047411	1	17101	17101		93.166	39.333	1	17515000			46272	4821	26618	26619	56318	56318					0.10952632722364797
SVLEQLLL	8	Unmodified	_SVLEQLLL_					0	0	0			REV__SECISBP2L|p.V789Sfs*2|1|0.21|ENSG00000138593|chr15:48999871-48999872|-/T|frameshift_variant	REV__SECISBP2L|p.V789Sfs*2|1|0.21|ENSG00000138593|chr15:48999871-48999872|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2403564453125	2	457.781493	913.548434	-0.041126	-1.8827E-05	-2.817	-0.0012896	-2.8582	-0.0013084	457.7798583816096	23.247	0.69048	23.16	22.909	23.599	-0.087608					43	24	2	0	0	0	0.34218	1	3502	3502		9.3474	0	1	173470	+		46273	15933	26619	26620	56319	56319					0.08820126217108282
SVLFAPGLL	9	Unmodified	_SVLFAPGLL_					0	0	0			REV__ENSG00000257335|ENST00000475668|MGAM	REV__ENSG00000257335|ENST00000475668|MGAM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7677917480469	2	458.778754	915.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.154	1	44.232	43.732	44.732	0.077515								0	0	0	0.20953	1	9760	9760		19.439	0	1		+		46274	19261	26620	26621	56320	56320					0.08180447425286275
SVLFFIML	8	Unmodified	_SVLFFIML_					0	0	0		ENSG00000174358|ENST00000304460|SLC6A19	ENSG00000174358|ENST00000304460|SLC6A19	ENSG00000174358|ENST00000304460|SLC6A19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.5943298339844	2	485.277532	968.540511	0.13765	6.6798E-05	2.954	0.0014335	3.0916	0.0015003	485.27870204446407	24.153	0.39397	24.153	23.973	24.367	0					27	13	3	0	0	0	0.34319	1	3642	3642		5.7604	0.52976	1	44771			46275	6789	26621	26622	56321	56321					0.054982756959589096
SVLGGVLKTK	10	Unmodified	_SVLGGVLKTK_					0	0	0		ENSG00000166439|ENST00000299563|RNF169	ENSG00000166439|ENST00000299563|RNF169	ENSG00000166439|ENST00000299563|RNF169	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7847900390625	2	501.321317	1000.62808	0.39311	0.00019708	-0.31928	-0.00016006	0.073839	3.7017E-05	501.32123865191693	35.537	0.25477	35.619	35.516	35.771	0.082359					13	8	2	0	0	0	0.30504	1	7119	7119		16.566	7.1828	1	213260			46276	6078	26622	26623	56322	56322					0.12779192891082403
SVLGKVNEIAK	11	Unmodified	_SVLGKVNEIAK_					0	0	0		ENST00000550988.5_1_12:57926276-57926769:-|nuORF;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2	ENST00000550988.5_1_12:57926276-57926769:-|nuORF	ENST00000550988.5_1_12:57926276-57926769:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3482055664062	2	579.348063	1156.68157	0.33804	0.00019584	0.095494	5.5324E-05	0.43354	0.00025117	579.3480466037977	35.625	0.59731	35.625	35.439	36.037	0					42	21	3	0	0	0	0.0032005	2	7141	7141;7186		84.06	45.445	1	642400			46277	6845	26623	26624	56323;56324	56323					0.10949945602919797
SVLGKVNEIAK	11	Unmodified	_SVLGKVNEIAK_					0	0	0		ENST00000550988.5_1_12:57926276-57926769:-|nuORF;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2	ENST00000550988.5_1_12:57926276-57926769:-|nuORF	ENST00000550988.5_1_12:57926276-57926769:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.3479614257812	2	579.348063	1156.68157	0.31289	0.00018127	-0.10784	-6.2475E-05	0.20505	0.0001188	579.3478953137034	35.505	0.49625	35.587	35.353	35.849	0.082355					33	17	2	0	0	0	0.0087692	2	7103	7103;7154		72.276	33.662	1	769510			46278	6845	26623	26624	56325;56326	56325					0.10949945602919797
SVLGKVNEIAK	11	Unmodified	_SVLGKVNEIAK_					0	0	0		ENST00000550988.5_1_12:57926276-57926769:-|nuORF;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2	ENST00000550988.5_1_12:57926276-57926769:-|nuORF	ENST00000550988.5_1_12:57926276-57926769:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.3479614257812	2	579.348063	1156.68157	-0.061232	-3.5475E-05	0.26772	0.0001551	0.20649	0.00011963	579.3482081589302	35.462	0.55347	35.547	35.343	35.897	0.0849					43	19	3	0	0	0	0.0013201	1	7117	7117		92.409	46.67	1	861660			46279	6845	26623	26624	56327	56327					0.10949945602919797
SVLGPILGSI	10	Unmodified	_SVLGPILGSI_					0	0	0			REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.9747009277344	2	478.294768	954.574983	0.23835	0.000114	-3.1076	-0.0014864	-2.8693	-0.0013724	478.2934909021133	38.256	0.3658	38.353	38.176	38.542	0.097527					14	12	2	0	0	0	0.30586	1	7931	7931		9.3831	0	1	100780	+		46280	15987	26624	26625	56328	56328					0.09587815108409359
SVLGRFING	9	Unmodified	_SVLGRFING_					0	0	0			REV__nc|ENSG00000186907|Q86UN3-2|RTN4RL2	REV__nc|ENSG00000186907|Q86UN3-2|RTN4RL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2729797363281	2	481.774534	961.534515	0.31701	0.00015273	-0.38034	-0.00018324	-0.063324	-3.0508E-05	481.77450946262036	35.817	0.50679	35.817	35.635	36.142	0					25	18	2	0	0	0	0.22596	1	7192	7192		21.747	5.8995	1	230470	+		46281	18478	26625	26626	56329	56329					0.052208935086468955
SVLGRFING	9	Unmodified	_SVLGRFING_					0	0	0			REV__nc|ENSG00000186907|Q86UN3-2|RTN4RL2	REV__nc|ENSG00000186907|Q86UN3-2|RTN4RL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	481.774534	961.534515	0.32772	0.00015789	-0.6241	-0.00030068	-0.29638	-0.00014279	481.7744991077825	35.721	0.49207	35.803	35.598	36.09	0.082359	-0.0068841	-0.000168	NaN	21.747	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232490	+		46282	18478	26625	26626							0.052208935086468955
SVLGSLLYY	9	Unmodified	_SVLGSLLYY_					0	0	0		nc|ENSG00000232388|A0A096LP01-2|SMIM26;ENSG00000232388|ENST00000411646|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.779052734375	2	507.778951	1013.54335	0.48163	0.00024456	0.11957	6.0718E-05	0.60121	0.00030528	507.7786658250865	82.685	0.81751	82.685	82.41	83.228	0					73	30	3	0	0	0	0.00014409	2	21618	21570;21618		133.7	48.345	1	1005600			46283	8476	26626	26627	56330;56331	56331					0.037118223544553075
SVLGSLLYY	9	Unmodified	_SVLGSLLYY_					0	0	0		nc|ENSG00000232388|A0A096LP01-2|SMIM26;ENSG00000232388|ENST00000411646|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7789306640625	2	507.778951	1013.54335	0.36602	0.00018586	0.088827	4.5104E-05	0.45484	0.00023096	507.77872853406734	82.611	0.70551	82.684	82.452	83.158	0.073097					59	27	4	0	0	0	0.00014409	2	21542	21542;21593		133.7	48.345	1	1064200			46284	8476	26626	26627	56332;56333	56332					0.037118223544553075
SVLGSLLYY	9	Unmodified	_SVLGSLLYY_					0	0	0		nc|ENSG00000232388|A0A096LP01-2|SMIM26;ENSG00000232388|ENST00000411646|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.7787170410156	2	507.778951	1013.54335	0.42209	0.00021433	0.024702	1.2543E-05	0.44679	0.00022687	507.77864641504334	82.742	0.88829	82.722	82.422	83.311	-0.020576					76	35	3	0	0	0	0.00014409	2	21622	21569;21622		133.7	48.345	1	1051500			46285	8476	26626	26627	56334;56335	56335					0.037118223544553075
SVLGSLLYYSR	11	Unmodified	_SVLGSLLYYSR_					0	0	0		nc|ENSG00000232388|A0A096LP01-2|SMIM26;ENSG00000232388|ENST00000411646|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.8086547851562	2	629.34552	1256.67649	0.45661	0.00028737	-0.069878	-4.3977E-05	0.38673	0.00024339	629.3456189682105	68.676	0.48888	68.676	68.462	68.951	0					31	17	3	0	0	0	0.096634	1	17358	17358		78.61	64.996	1	253860			46286	8476	26627	26628	56336	56336					0.05841641740312298
SVLGSLLYYSR	11	Unmodified	_SVLGSLLYYSR_					0	0	0		nc|ENSG00000232388|A0A096LP01-2|SMIM26;ENSG00000232388|ENST00000411646|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.808837890625	2	629.34552	1256.67649	0.20414	0.00012848	0.2818	0.00017735	0.48595	0.00030583	629.3456894276205	68.669	0.62077	68.741	68.536	69.157	0.071938					40	22	3	0	0	0	0.19135	1	17348	17348		59.013	48.862	1	323450			46287	8476	26627	26628	56337	56337					0.05841641740312298
SVLGSLLYYSR	11	Unmodified	_SVLGSLLYYSR_					0	0	0		nc|ENSG00000232388|A0A096LP01-2|SMIM26;ENSG00000232388|ENST00000411646|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	nc|ENSG00000232388|A0A096LP01-2|SMIM26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.8088989257812	2	629.34552	1256.67649	0.3459	0.00021769	-0.28296	-0.00017808	0.062934	3.9607E-05	629.3453355166686	68.76	0.40295	68.741	68.572	68.975	-0.019157					33	14	3	0	0	0	0.13892	1	17367	17367		70.496	58.255	1	372860			46288	8476	26627	26628	56338	56338					0.05841641740312298
SVLGSQITK	9	Unmodified	_SVLGSQITK_					0	0	0			REV__nc|ENSG00000197057|Q6ZMT9-2|DTHD1	REV__nc|ENSG00000197057|Q6ZMT9-2|DTHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.6184387207031	2	466.7742	931.533846	0.054869	2.5612E-05	-0.37603	-0.00017552	-0.32116	-0.00014991	466.7740246814443	24.473	0.67841	24.4	23.966	24.645	-0.072559					38	22	2	0	0	0	0.24471	1	3799	3799		17.113	0	1	119510	+		46289	18706	26628	26629	56339	56339					0.06534054068936257
SVLGVTVTR	9	Unmodified	_SVLGVTVTR_					0	0	0		ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2821960449219	2	466.282192	930.549831	0.19975	9.3138E-05	0.1167	5.4416E-05	0.31645	0.00014755	466.28219716731087	40.376	0.47229	40.376	40.161	40.634	0					41	16	3	0	0	0	0.0091837	1	8608	8608		80.676	22.954	1	803310			46290	4948	26629	26630	56340	56340					0.08177760305841275
SVLGVTVTR	9	Unmodified	_SVLGVTVTR_					0	0	0		ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2540283203125	2	466.282192	930.549831	0.25856	0.00012056	-0.2497	-0.00011643	0.0088622	4.1323E-06	466.28202666960686	40.249	0.48804	40.342	40.123	40.611	0.09267					44	17	3	0	0	0	0.044909	1	8551	8551		61.09	22.475	1	658460			46291	4948	26629	26630	56341	56341					0.08177760305841275
SVLGVTVTR	9	Unmodified	_SVLGVTVTR_					0	0	0		ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2537841796875	2	466.282192	930.549831	0.34291	0.00015989	-0.25916	-0.00012084	0.083744	3.9048E-05	466.2819427004927	40.221	0.46946	40.32	40.062	40.532	0.099403					37	16	3	0	0	0	0.052436	1	8535	8535		65.474	21.701	1	812670			46292	4948	26629	26630	56342	56342					0.08177760305841275
SVLGYHIPK	9	Unmodified	_SVLGYHIPK_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8013916015625	2	507.292559	1012.57057	0.13735	6.9676E-05	0.38554	0.00019558	0.52289	0.00026526	507.29262480159423	38.333	0.86678	38.333	38.064	38.931	0					65	30	3	0	0	0	0.12563	1	7985	7985		39.95	10.868	1	635110			46293	4110	26630	26631	56343	56343					0.06478350685506484
SVLGYHIPK	9	Unmodified	_SVLGYHIPK_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	507.292559	1012.57057	0.34209	0.00017354	0.15185	7.7035E-05	0.49395	0.00025058	507.2924301464364	38.341	0.81503	38.432	38.127	38.942	0.090881	0.051954	-0.00011675	NaN	39.95	78	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	648890			46294	4110	26630	26631							0.06478350685506484
SVLHVLGILK	10	Unmodified	_SVLHVLGILK_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.S1823Wfs*15|1|0.26|ENSG00000124201|chr20:49247550-49247556|AGGCCAG/-|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2902221679688	2	539.852784	1077.69102	0.47471	0.00025628	-0.86664	-0.00046786	-0.39193	-0.00021158	539.8519566189739	57.345	0.4142	57.43	57.184	57.598	0.085621					28	14	3	0	0	0	0.31237	1	13837	13837		11.495	7.1655	1	400320			46295	3140	26631	26632	56344	56344					0.15527758679127146
SVLHVLGILK	10	Unmodified	_SVLHVLGILK_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.S1823Wfs*15|1|0.26|ENSG00000124201|chr20:49247550-49247556|AGGCCAG/-|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8366088867188	2	539.852784	1077.69102	0.38764	0.00020927	-0.89608	-0.00048375	-0.50844	-0.00027448	539.8521092635568	57.594	0.4045	57.577	57.285	57.69	-0.0172					22	14	2	0	0	0	0.37454	1	13895	13895		8.1555	2.9249	1	399920			46296	3140	26631	26632	56345	56345					0.15527758679127146
SVLIEVQNK	9	Unmodified	_SVLIEVQNK_					0	0	0		nc|ENSG00000171055|Q9UHY8-2|FEZ2;ENSG00000171055|ENST00000405912|FEZ2;ENST00000487282.5_1_2:36780308-36806125:-|nuORF	nc|ENSG00000171055|Q9UHY8-2|FEZ2	nc|ENSG00000171055|Q9UHY8-2|FEZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.3006591796875	2	515.300581	1028.58661	0.4255	0.00021926	-0.29804	-0.00015358	0.12746	6.5683E-05	515.3004345735126	36.453	0.58774	36.453	36.256	36.844	0					34	20	3	0	0	0	0.0010968	1	7419	7419		121.53	25.168	1	552700			46297	6507	26632	26633	56346	56346					0.07346012131756652
SVLIEVQNK	9	Unmodified	_SVLIEVQNK_					0	0	0		nc|ENSG00000171055|Q9UHY8-2|FEZ2;ENSG00000171055|ENST00000405912|FEZ2;ENST00000487282.5_1_2:36780308-36806125:-|nuORF	nc|ENSG00000171055|Q9UHY8-2|FEZ2	nc|ENSG00000171055|Q9UHY8-2|FEZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3009033203125	2	515.300581	1028.58661	0.39241	0.00020221	-0.69267	-0.00035693	-0.30026	-0.00015472	515.3004144151787	36.384	0.7939	36.466	36.233	37.027	0.082359					35	28	2	0	0	0	0.001957	1	7407	7407		110.55	24.911	1	417410			46298	6507	26632	26633	56347	56347					0.07346012131756652
SVLIEVQNK	9	Unmodified	_SVLIEVQNK_					0	0	0		nc|ENSG00000171055|Q9UHY8-2|FEZ2;ENSG00000171055|ENST00000405912|FEZ2;ENST00000487282.5_1_2:36780308-36806125:-|nuORF	nc|ENSG00000171055|Q9UHY8-2|FEZ2	nc|ENSG00000171055|Q9UHY8-2|FEZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.3004760742188	2	515.300581	1028.58661	0.61894	0.00031894	-0.21309	-0.00010981	0.40584	0.00020913	515.3002705483082	36.365	0.48472	36.451	36.196	36.68	0.08625					32	16	4	0	0	0	0.0041491	1	7384	7384		93.166	16.341	1	473940			46299	6507	26632	26633	56348	56348					0.07346012131756652
SVLIFSGTPIT	11	Unmodified	_SVLIFSGTPIT_					0	0	0		HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|403|3|anti-sense;HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|403|3|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|403|3|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|403|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2796020507812	2	567.823889	1133.63323	0.45554	0.00025867	-2.1802	-0.001238	-1.7246	-0.00097928	567.8223718531743	63.812	0.58969	63.802	63.563	64.152	-0.0095329					47	20	3	0	0	0	0.30294	1	15838	15838		19.362	3.2128	1	304260			46300	12412	26633	26634	56349	56349					0.07175451963030355
SVLILASY	8	Unmodified	_SVLILASY_					0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.2548828125	2	433.255111	864.49567	-0.34525	-0.00014958	-0.29456	-0.00012762	-0.63982	-0.0002772	433.2550527691599	96.137	1.1883	96.137	95.766	96.954	0					286	114	3	0	0	0	0.4397	4	25653	25653;25689;25724;25759		9.3474	0	1	6472600			46301	12853	26634	26635	56350;56351;56352;56353	56350					0.058001681542691585
SVLILASY	8	Unmodified	_SVLILASY_					0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.2548522949219	2	433.255111	864.49567	-0.15076	-6.5316E-05	-0.83373	-0.00036122	-0.98449	-0.00042653	433.2550095854782	95.996	1.3446	96.074	95.701	97.046	0.077408					376	125	5	0	0	0	0.4397	4	25625	25625;25660;25696;25731		9.3474	0	1	10421000			46302	12853	26634	26635	56354;56355;56356;56357	56354					0.058001681542691585
SVLILASY	8	Unmodified	_SVLILASY_					0	0	0		nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	nc|ENSG00000176510|Q8NH08|OR10AC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.2548828125	2	433.255111	864.49567	-0.029506	-1.2784E-05	-0.6291	-0.00027256	-0.65861	-0.00028535	433.25500053488474	96.17	1.2983	96.166	95.716	97.015	-0.0038147					393	125	5	0	0	0	0.4397	4	25668	25668;25703;25742;25777		9.3474	0	1	11469000			46303	12853	26634	26635	56358;56359;56360;56361	56358					0.058001681542691585
SVLIQCKK	8	Unmodified	_SVLIQCKK_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.78448486328125	2	459.775688	917.536823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.441	1	17.381	16.881	17.881	-0.060429								0	0	0	0.36336	1	1630	1630		8.5933	0	1		+		46304	23129	26635	26636	56362	56362					0.07475605922104478
SVLIQKQIFK	10	Unmodified	_SVLIQKQIFK_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000528833.1_1_11:9431619-9435997:+|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.376708984375	2	602.376623	1202.73869	0.32725	0.00019713	0.010126	6.0999E-06	0.33738	0.00020323	602.3765386308847	41.338	0.53859	41.338	41.039	41.578	0					54	19	4	0	0	0	0.0044422	1	8889	8889		94.909	63.64	1	2546700			46305	8284	26636	26637	56363	56363					0.14543412879288553
SVLIQKQIFK	10	Unmodified	_SVLIQKQIFK_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000528833.1_1_11:9431619-9435997:+|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.376953125	2	602.376623	1202.73869	0.42813	0.00025789	0.33119	0.0001995	0.75931	0.00045739	602.3767363611875	41.169	0.60924	41.259	40.978	41.587	0.090252					64	22	4	0	0	0	1.5574E-05	2	8883	8833;8883		147.24	95.611	1	2541900			46306	8284	26636	26637	56364;56365	56365					0.14543412879288553
SVLIQKQIFK	10	Unmodified	_SVLIQKQIFK_					0	0	0		ENSG00000205339|ENST00000379719|IPO7;ENST00000528833.1_1_11:9431619-9435997:+|nuORF	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3770751953125	2	602.376623	1202.73869	0.23525	0.00014171	0.41859	0.00025215	0.65384	0.00039386	602.3768168035833	41.091	0.54518	41.188	40.96	41.505	0.096626					59	19	4	0	0	0	3.3863E-05	2	8852	8812;8852		135.86	84.84	1	2332000			46307	8284	26636	26637	56366;56367	56367					0.14543412879288553
SVLIQPQLSI	10	Unmodified	_SVLIQPQLSI_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7985229492188	2	549.331882	1096.64921	0.45694	0.00025101	-0.25079	-0.00013777	0.20614	0.00011324	549.3318454245574	33.135	0.90867	33.191	32.84	33.749	0.055313					57	32	3	0	0	0	0.31691	1	6443	6443		9.3831	0.63772	1	259800			46308	6961	26637	26638	56368	56368					0.10475158199960788
SVLIQPQLSI	10	Unmodified	_SVLIQPQLSI_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	549.331882	1096.64921	0.30962	0.00017008	-0.0036431	-2.0013E-06	0.30597	0.00016808	549.3318855737419	33.198	0.77943	33.198	32.895	33.674	0	0.0023273	3.0857E-05	NaN	5.7319	60	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226910			46309	6961	26637	26638							0.10475158199960788
SVLIQPQLSI	10	Unmodified	_SVLIQPQLSI_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.331882	1096.64921	0.36364	0.00019976	0.053804	2.9556E-05	0.41744	0.00022932	549.3318822656614	33.145	0.80304	33.199	32.818	33.621	0.054371	0.0030545	9.3972E-05	NaN	5.7319	48	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238680			46310	6961	26637	26638							0.10475158199960788
SVLISVNPFK	10	Unmodified	_SVLISVNPFK_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E;ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000599123.1_1_19:8619471-8620644:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF	ENSG00000157483|ENST00000288235|MYO1E;ENSG00000142347|ENST00000644032|MYO1F	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.29833984375	2	552.326599	1102.63865	0.36269	0.00020032	0.54916	0.00030332	0.91185	0.00050364	552.3267166331466	62.172	0.36966	62.172	61.971	62.341	0					30	13	3	0	0	0	0.27086	1	15343	15343		32.037	8.8891	1	275380			46311	5309;4439	26638	26639	56369	56369					0.09143175545523263
SVLISVNPFK	10	Unmodified	_SVLISVNPFK_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E;ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000599123.1_1_19:8619471-8620644:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF	ENSG00000157483|ENST00000288235|MYO1E;ENSG00000142347|ENST00000644032|MYO1F	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.298095703125	2	552.326599	1102.63865	0.2328	0.00012858	-0.19726	-0.00010895	0.035546	1.9633E-05	552.3262498602533	62.12	0.4361	62.217	61.978	62.414	0.096985					33	15	3	0	0	0	0.21748	1	15308	15308		47.732	19.237	1	259900			46312	5309;4439	26638	26639	56370	56370					0.09143175545523263
SVLISVNPFK	10	Unmodified	_SVLISVNPFK_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E;ENSG00000142347|ENST00000644032|MYO1F;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;ENST00000599123.1_1_19:8619471-8620644:-|nuORF;ENST00000594774.5_1_19:8618146-8642307:-|nuORF	ENSG00000157483|ENST00000288235|MYO1E;ENSG00000142347|ENST00000644032|MYO1F	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2982177734375	2	552.326599	1102.63865	0.31496	0.00017396	0.035997	1.9882E-05	0.35096	0.00019384	552.3263811935536	62.148	0.44723	62.139	61.905	62.353	-0.0085564					28	16	2	0	0	0	0.27086	1	15323	15323		32.037	12.676	1	253230			46313	5309;4439	26638	26639	56371	56371					0.09143175545523263
SVLKFISVLK	10	Unmodified	_SVLKFISVLK_					0	0	0		ENST00000490738.5_1_1:6932031-6932076:+|nuORF	ENST00000490738.5_1_1:6932031-6932076:+|nuORF	ENST00000490738.5_1_1:6932031-6932076:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.8351440429688	2	567.368267	1132.72198	0.10778	6.115E-05	-0.061928	-3.5136E-05	0.045849	2.6014E-05	567.3681665445025	59.507	0.46161	59.507	59.267	59.728	0					25	15	2	0	0	0	0.32101	1	14531	14531		2.4985	0.65425	1	299350			46314	11164	26639	26640	56372	56372					0.16092911993359849
SVLKFISVLK	10	Unmodified	_SVLKFISVLK_					0	0	0		ENST00000490738.5_1_1:6932031-6932076:+|nuORF	ENST00000490738.5_1_1:6932031-6932076:+|nuORF	ENST00000490738.5_1_1:6932031-6932076:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.8349609375	2	567.368267	1132.72198	0.32735	0.00018573	-0.11674	-6.6237E-05	0.2106	0.00011949	567.3680272696698	59.317	0.36136	59.409	59.238	59.6	0.091301					26	12	3	0	0	0	0.32033	1	14484	14484		4.1895	1.4543	1	255470			46315	11164	26639	26640	56373	56373					0.16092911993359849
SVLKLLDPEKP	11	Unmodified	_SVLKLLDPEKP_					0	0	0		ENSG00000137573|ENST00000402687|SULF1;ENST00000521946.5_1_8:70505207-70554528:+|nuORF	ENSG00000137573|ENST00000402687|SULF1	ENSG00000137573|ENST00000402687|SULF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3722534179688	2	619.871371	1237.72819	0.04266	2.6444E-05	-2.2157	-0.0013734	-2.173	-0.001347	620.3724641141405	94.171	0.25029	94.258	94.092	94.343	0.086678					39	18	3	0	0	0	0.46655	1	25073	25073		2.4985	1.0166	1	178870			46316	4061	26640	26641	56374	56374					0.11883385434225602
SVLKNLLIK	9	Unmodified	_SVLKNLLIK_					0	0	0		ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	ENSG00000088387|ENST00000682017|DOCK9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8091430664062	2	514.347335	1026.68012	-0.0038513	-1.9809E-06	0.0017912	9.2128E-07	-0.0020602	-1.0596E-06	514.3472669714384	42.935	0.29474	43.026	42.853	43.147	0.091362					17	10	2	0	0	0	0.24848	1	9396	9396		5.7319	0	1	184670			46317	1324	26641	26642	56375	56375					0.16784356304833636
SVLKQKRQQMK	11	Unmodified	_SVLKQKRQQMK_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7401428222656	3	458.606373	1372.79729	-0.085902	-3.9395E-05	-0.81678	-0.00037458	-0.90269	-0.00041398	458.6065202296062	16.775	0.32782	16.66	16.448	16.775	-0.11434					16	11	3	0	0	0	0.33336	1	1371	1371		1.1098	0.65524	1	30508			46318	7190	26642	26643	56376	56376					0.12580146182131102
SVLKQKRQQMK	11	Unmodified	_SVLKQKRQQMK_					0	0	0		ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	ENSG00000180488|ENST00000370791|MIGA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	458.606373	1372.79729	-0.010662	-4.8897E-06	0.06535	2.997E-05	0.054688	2.508E-05	458.6064107375276	16.644	0.25538	16.644	16.433	16.689	0	-0.0082487	0.00013297	NaN	1.1098	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46180			46319	7190	26642	26643							0.12580146182131102
SVLKQKSEE	9	Unmodified	_SVLKQKSEE_					0	0	0			REV__nc|ENSG00000138376|Q99728-3|BARD1	REV__nc|ENSG00000138376|Q99728-3|BARD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.22802734375	2	524.287671	1046.56079	0.57716	0.0003026	-0.086775	-4.5495E-05	0.49039	0.0002571	524.2876107364333	21.562	0.6442	21.462	21.16	21.804	-0.10034					39	22	2	0	0	0	0.26031	1	2961	2961		3.5965	0	1	84249	+		46320	15923	26643	26644	56377	56377					0.039371178894725745
SVLLAEPNRPK	11	Unmodified	_SVLLAEPNRPK_					0	0	0			REV__ENST00000406213.1_1_22:24237237-24238205:-|nuORF	REV__ENST00000406213.1_1_22:24237237-24238205:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.55633544921875	3	408.575067	1222.70337	-0.0024469	-9.9972E-07	-1.342	-0.00054831	-1.3445	-0.00054931	408.57454573696253	21.362	0.48928	21.362	21.138	21.627	0					37	16	3	0	0	0	0.33287	1	2841	2841		2.8433	1.9789	1	41673	+		46321	20737	26644	26645	56378	56378					0.10092750351486757
SVLLFVTKK	9	Unmodified	_SVLLFVTKK_					0	0	0		ENSG00000198231|ENST00000389924|DDX42;nc|ENSG00000198231|Q86XP3-2|DDX42;ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENSG00000198231|ENST00000389924|DDX42	ENSG00000198231|ENST00000389924|DDX42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8341674804688	2	517.83406	1033.65357	0.10991	5.6915E-05	0.1707	8.8394E-05	0.28061	0.00014531	517.8341175502868	42.422	1.4341	42.422	42.085	43.519	0					167	52	5	0	0	0	4.216E-07	4	9232	9184;9232;9272;9316		163.69	90.719	1	11875000			46322	8054	26645	26646	56379;56380;56381;56382	56380					0.1380866741351383
SVLLFVTKK	9	Unmodified	_SVLLFVTKK_					0	0	0		ENSG00000198231|ENST00000389924|DDX42;nc|ENSG00000198231|Q86XP3-2|DDX42;ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENSG00000198231|ENST00000389924|DDX42	ENSG00000198231|ENST00000389924|DDX42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.834228515625	2	517.83406	1033.65357	0.30682	0.00015888	-0.17712	-9.1717E-05	0.1297	6.7165E-05	517.8339649421259	42.312	1.6248	42.397	42.009	43.634	0.085197					160	58	4	0	0	0	4.216E-07	5	9187	9140;9187;9229;9278;9328		163.69	93.758	1	12473000			46323	8054	26645	26646	56383;56384;56385;56386;56387	56384					0.1380866741351383
SVLLFVTKK	9	Unmodified	_SVLLFVTKK_					0	0	0		ENSG00000198231|ENST00000389924|DDX42;nc|ENSG00000198231|Q86XP3-2|DDX42;ENST00000578593.1_1_17:61889231-61895755:+|nuORF	ENSG00000198231|ENST00000389924|DDX42	ENSG00000198231|ENST00000389924|DDX42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8341674804688	2	517.83406	1033.65357	0.3261	0.00016886	-0.15157	-7.8489E-05	0.17452	9.0375E-05	517.8339701512815	42.218	1.6535	42.309	41.957	43.611	0.091362					166	59	4	0	0	0	4.216E-07	5	9172	9122;9172;9215;9264;9320		163.69	99.726	1	12486000			46324	8054	26645	26646	56388;56389;56390;56391;56392	56389					0.1380866741351383
SVLLLAQCLRW	11	Unmodified	_SVLLLAQCLRW_					0	0	0		ENST00000482853.5_1_6:41001618-41002768:-|nuORF;ENSG00000124602|ENST00000244565|UNC5CL	ENST00000482853.5_1_6:41001618-41002768:-|nuORF	ENST00000482853.5_1_6:41001618-41002768:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8821105957031	3	434.584797	1300.73256	-0.10118	-4.3973E-05	1.2595	0.00054735	1.1583	0.00050338	434.5853036851693	23.282	0.41058	23.237	23.033	23.444	-0.044867					24	14	2	0	0	0	0.3322	1	3430	3430		4.7159	0.30977	1	63434			46325	3171	26646	26647	56393	56393					0.09422571376126143
SVLLLAQCLRW	11	Unmodified	_SVLLLAQCLRW_					0	0	0		ENST00000482853.5_1_6:41001618-41002768:-|nuORF;ENSG00000124602|ENST00000244565|UNC5CL	ENST00000482853.5_1_6:41001618-41002768:-|nuORF	ENST00000482853.5_1_6:41001618-41002768:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	434.584797	1300.73256	-0.1894	-8.2309E-05	1.5521	0.00067452	1.3627	0.00059221	434.58547775678755	23.291	0.49819	23.203	22.909	23.407	-0.08761	-0.017318	0.00014935	NaN	4.7159	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76378			46326	3171	26646	26647							0.09422571376126143
SVLLLIVWGFK	11	Unmodified	_SVLLLIVWGFK_					0	0	0			REV__ENST00000300146.9_1_11:59405566-59405851:-|nuORF	REV__ENST00000300146.9_1_11:59405566-59405851:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.88018798828125	3	425.600553	1273.77983	-0.39401	-0.00016769	-0.31462	-0.0001339	-0.70863	-0.00030159	425.6003542008678	14.494	0.40952	14.389	14.131	14.54	-0.10466					32	13	4	0	0	0	0.33348	1	774	774		0.40827	0.26837	1	72053	+		46327	19813	26647	26648	56394	56394					0.153891739187884
SVLLLIVWGFK	11	Unmodified	_SVLLLIVWGFK_					0	0	0			REV__ENST00000300146.9_1_11:59405566-59405851:-|nuORF	REV__ENST00000300146.9_1_11:59405566-59405851:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.88018798828125	3	425.600553	1273.77983	-0.36494	-0.00015532	-0.53052	-0.00022579	-0.89546	-0.00038111	425.60034589700507	14.476	0.4098	14.41	14.206	14.616	-0.066067					35	14	4	0	0	0	0.3325	1	767	767		4.1166	2.0327	1	88249	+		46328	19813	26647	26648	56395	56395					0.153891739187884
SVLLRAPKL	9	Unmodified	_SVLLRAPKL_					0	0	0		CCDC138|p.T582I|1|0.33|ENSG00000163006|chr2:108873502-108873502|C/T|missense_variant;ENSG00000163006|ENST00000295124|CCDC138	CCDC138|p.T582I|1|0.33|ENSG00000163006|chr2:108873502-108873502|C/T|missense_variant	CCDC138|p.T582I|1|0.33|ENSG00000163006|chr2:108873502-108873502|C/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2652282714844	2	498.831852	995.649151	0.53634	0.00026754	-0.33993	-0.00016957	0.19641	9.7977E-05	498.83158383432544	40.67	0.295	40.67	40.473	40.768	0					13	10	2	0	0	0	0.25622	1	8656	8656		7.2892	0.56607	1	72588			46329	91	26648	26649	56396	56396					0.1511520299059157
SVLLSTKQ	8	Unmodified	_SVLLSTKQ_					0	0	0			REV__ITGAL|p.A421V|1|0.21|ENSG00000005844|chr16:30494260-30494260|C/T|missense_variant	REV__ITGAL|p.A421V|1|0.21|ENSG00000005844|chr16:30494260-30494260|C/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.56439208984375	2	438.263468	874.512382	-0.66267	-0.00029042	-0.049378	-2.1641E-05	-0.71205	-0.00031207	438.26344445140836	35.215	0.73687	35.215	34.868	35.604	0					48	26	2	0	0	0	0.34353	1	7125	7125		2.0598	0	1	837570	+		46330	22771	26649	26650	56397	56397					0.07010669040221273
SVLLVERAGRR	11	Unmodified	_SVLLVERAGRR_					0	0	0		ENSG00000181856|ENST00000317370|SLC2A4	ENSG00000181856|ENST00000317370|SLC2A4	ENSG00000181856|ENST00000317370|SLC2A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.3831176757812	2	628.383303	1254.75205	0.61231	0.00038476	-1.5452	-0.00097099	-0.93292	-0.00058623	628.3825390214358	84.28	0.27419	84.28	84.163	84.437	0					39	10	4	0	0	0	0.3263	1	22084	22084		14.405	2.9107	1	5540700			46331	7257	26650	26651	56398	56398					0.13486663711250912
SVLLVERAGRR	11	Unmodified	_SVLLVERAGRR_					0	0	0		ENSG00000181856|ENST00000317370|SLC2A4	ENSG00000181856|ENST00000317370|SLC2A4	ENSG00000181856|ENST00000317370|SLC2A4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	628.383303	1254.75205	0.3198	0.00020096	-0.8906	-0.00055964	-0.57081	-0.00035868	628.3826983005993	83.887	1.454	83.964	83.54	84.994	0.077095	-0.15774	2.9346E-05	NaN	14.405	116	58	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6051500			46332	7257	26650	26651							0.13486663711250912
SVLMYEVEDGW	11	Unmodified	_SVLMYEVEDGW_					0	0	0			REV__ENSG00000001084|ENST00000650454|GCLC	REV__ENSG00000001084|ENST00000650454|GCLC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.2738952636719	3	443.200678	1326.5802	-0.017298	-7.6666E-06	-0.44512	-0.00019728	-0.46242	-0.00020495	443.20053301833775	35.445	0.35585	35.52	35.261	35.617	0.075306					31	12	4	0	0	0	0.33287	1	7093	7093		1.3296	0	1	318640	+		46333	13313	26651	26652	56399	56399					-0.07002293881942023
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENST00000464444.1_1_19:13005132-13005321:+|nuORF;ENSG00000137154|ENST00000380394|RPS6	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.8263854980469	2	492.826235	983.637917	0.18807	9.2685E-05	0.070454	3.4722E-05	0.25852	0.00012741	492.82646115084	61.385	2.3614	61.385	61.052	63.413	0					175	88	5	0	0	0	5.4465E-12	5	15029	15029;15077;15122;15168;15217		201.57	115.93	1	39085000			46334	4031	26652	26653	56400;56401;56402;56403;56404	56400					0.14544380896461462
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENST00000464444.1_1_19:13005132-13005321:+|nuORF;ENSG00000137154|ENST00000380394|RPS6	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.78961181640625	2	492.826235	983.637917	0.56335	0.00027763	-1.3657	-0.00067305	-0.80235	-0.00039542	492.82571071898377	63.936	1.3133	63.936	63.413	64.727	0					79	47	3	0	0	0	0.20881	1	15771	15771		27.629	8.3718	1	279500			46335	4031	26652	26653	56405	56405					0.14544380896461462
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENST00000464444.1_1_19:13005132-13005321:+|nuORF;ENSG00000137154|ENST00000380394|RPS6	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.82635498046875	2	492.826235	983.637917	0.098563	4.8574E-05	0.1352	6.6628E-05	0.23376	0.0001152	492.82645133534714	61.25	2.4752	61.347	61.065	63.54	0.096985					177	90	5	0	0	0	5.4465E-12	5	14988	14988;15036;15085;15137;15182		201.57	105.46	1	42242000			46336	4031	26652	26653	56406;56407;56408;56409;56410	56406					0.14544380896461462
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENST00000464444.1_1_19:13005132-13005321:+|nuORF;ENSG00000137154|ENST00000380394|RPS6	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.287353515625	2	492.826235	983.637917	0.54788	0.00027001	-0.60853	-0.0002999	-0.060651	-2.989E-05	492.8261467081067	67.714	0.20561	67.792	67.628	67.834	0.078041					10	6	2	0	0	0	0.25202	1	16987	16987		10.824	1.4408	1	71336			46337	4031	26652	26653	56411	56411					0.14544380896461462
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENST00000464444.1_1_19:13005132-13005321:+|nuORF;ENSG00000137154|ENST00000380394|RPS6	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.82647705078125	2	492.826235	983.637917	0.12288	6.0557E-05	0.19738	9.7275E-05	0.32026	0.00015783	492.8264579617119	61.347	2.1753	61.337	61.016	63.192	-0.0094528					158	79	5	0	0	0	5.4465E-12	5	15010	15010;15058;15106;15161;15211		201.57	112.61	1	42591000			46338	4031	26652	26653	56412;56413;56414;56415;56416	56412					0.14544380896461462
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENST00000464444.1_1_19:13005132-13005321:+|nuORF;ENSG00000137154|ENST00000380394|RPS6	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.81732177734375	2	492.826235	983.637917	0.09388	4.6266E-05	-1.5324	-0.00075521	-1.4385	-0.00070894	492.82646051825145	65.198	0.58163	65.186	64.922	65.504	-0.011337					29	21	2	0	0	0	0.22061	1	16197	16197		13.042	1.4022	1	130560			46339	4031	26652	26653	56417	56417					0.14544380896461462
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENST00000464444.1_1_19:13005132-13005321:+|nuORF;ENSG00000137154|ENST00000380394|RPS6	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.3059997558594	2	492.826235	983.637917	0.55807	0.00027503	-1.8499	-0.00091168	-1.2918	-0.00063665	492.8254766753001	63.938	0.79823	63.928	63.591	64.389	-0.0095329					49	28	2	0	0	0	0.1645	1	15762	15762		40.239	18.702	1	216480			46340	4031	26652	26653	56418	56418					0.14544380896461462
SVLNLVIVK	9	Unmodified	_SVLNLVIVK_					0	0	0		ENST00000464444.1_1_19:13005132-13005321:+|nuORF;ENSG00000137154|ENST00000380394|RPS6	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	ENST00000464444.1_1_19:13005132-13005321:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	492.826235	983.637917	0.14024	6.9113E-05	-0.44048	-0.00021708	-0.30025	-0.00014797	492.826415512405	65.217	0.33071	65.217	65.128	65.458	0	0.015083	0.00032518	NaN	13.042	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100710			46341	4031	26652	26653							0.14544380896461462
SVLNQQFAK	9	Unmodified	_SVLNQQFAK_					0	0	0			REV__DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant	REV__DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3240356445312	2	517.785099	1033.55564	0.46662	0.00024161	0.5751	0.00029778	1.0417	0.00053939	517.7852615606287	56.826	0.64431	56.826	56.471	57.116	0					37	23	2	0	0	0	0.1939	1	13644	13644		30.637	0	1	541720	+		46342	13305	26653	26654	56419	56419					0.040208588175119075
SVLNQQFAK	9	Unmodified	_SVLNQQFAK_					0	0	0			REV__DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant	REV__DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3240356445312	2	517.785099	1033.55564	0.47775	0.00024737	0.46374	0.00024012	0.94148	0.00048749	517.7853280861392	56.697	0.60343	56.776	56.437	57.04	0.078674					38	22	2	0	0	0	0.1939	1	13627	13627		30.637	0	1	479830	+		46343	13305	26653	26654	56420	56420					0.040208588175119075
SVLPFQIYY	9	Unmodified	_SVLPFQIYY_					0	0	0		ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.3291015625	2	565.30005	1128.58555	0.3846	0.00021741	-0.2224	-0.00012572	0.16219	9.1688E-05	565.3000344051574	87.253	0.71551	87.248	86.995	87.71	-0.0056229					66	34	3	0	0	0	0.15943	1	22942	22942		39.95	23.007	1	409780			46344	7274	26654	26655	56421	56421					0.026397977628448643
SVLPFQIYY	9	Unmodified	_SVLPFQIYY_					0	0	0		ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	565.30005	1128.58555	0.43317	0.00024487	-0.655	-0.00037027	-0.22183	-0.0001254	565.2999330703135	87.253	0.61798	87.253	86.966	87.584	0	0.017535	-0.00017089	NaN	39.95	55	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197300			46345	7274	26654	26655							0.026397977628448643
SVLPFQIYY	9	Unmodified	_SVLPFQIYY_					0	0	0		ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	565.30005	1128.58555	0.43915	0.00024825	-0.64981	-0.00036734	-0.21065	-0.00011908	565.3001483525446	87.119	0.58892	87.206	86.936	87.525	0.087097	-0.029465	-0.00016502	NaN	39.95	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298460			46346	7274	26654	26655							0.026397977628448643
SVLPKPAL	8	Unmodified	_SVLPKPAL_					0	0	0		ENSG00000021826|ENST00000233072|CPS1;nc|ENSG00000021826|P31327-3|CPS1	ENSG00000021826|ENST00000233072|CPS1	ENSG00000021826|ENST00000233072|CPS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2087097167969	2	412.765646	823.516739	-0.41166	-0.00016992	1.8078	0.00074621	1.3962	0.00057629	412.76703925117386	35.559	1.3642	35.559	34.892	36.256	0					86	49	2	0	0	0	0.34319	1	7178	7178		5.7604	0	1	234200			46347	512	26655	26656	56422	56422					0.09792178253792372
SVLPTHWR	8	Unmodified	_SVLPTHWR_					0	0	0		nc|ENSG00000159216|Q01196-6|RUNX1;nc|ENSG00000159216|Q01196-5|RUNX1;nc|ENSG00000159216|Q01196-7|RUNX1;nc|ENSG00000159216|Q01196-3|RUNX1;nc|ENSG00000159216|Q01196-4|RUNX1;nc|ENSG00000159216|Q01196|RUNX1;nc|ENSG00000159216|Q01196-9|RUNX1;nc|ENSG00000159216|Q01196-10|RUNX1;nc|ENSG00000159216|Q01196-2|RUNX1;ENSG00000159216|ENST00000675419|RUNX1	nc|ENSG00000159216|Q01196-6|RUNX1	nc|ENSG00000159216|Q01196-6|RUNX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.2672119140625	2	498.274701	994.534849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.418	1	17.358	16.858	17.858	-0.060429								0	0	0	0.35663	1	1623	1623		11.64	2.2929	1				46348	5392	26656	26657	56423	56423					0.03736313228512245
SVLPTKTVK	9	Unmodified	_SVLPTKTVK_					0	0	0		ENST00000290846.8_1_22:46733720-46733786:+|nuORF	ENST00000290846.8_1_22:46733720-46733786:+|nuORF	ENST00000290846.8_1_22:46733720-46733786:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.80828857421875	2	486.808042	971.601532	0.15128	7.3647E-05	0.023129	1.1259E-05	0.17441	8.4906E-05	486.80794648726254	22.247	1.1109	22.247	21.68	22.791	0					84	39	4	0	0	0	0.07944	2	3043	3043;3094		41.956	5.4494	1	651200			46349	9153	26657	26658	56424;56425	56424					0.11459503999765275
SVLPTKTVK	9	Unmodified	_SVLPTKTVK_					0	0	0		ENST00000290846.8_1_22:46733720-46733786:+|nuORF	ENST00000290846.8_1_22:46733720-46733786:+|nuORF	ENST00000290846.8_1_22:46733720-46733786:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.80810546875	2	486.808042	971.601532	0.17364	8.4529E-05	0.033137	1.6131E-05	0.20678	0.00010066	486.8079598100626	22.364	0.81305	22.263	21.994	22.807	-0.10034					74	29	4	0	0	0	0.074552	2	3084	3084;3129		43.772	5.4494	1	727850			46350	9153	26657	26658	56426;56427	56426					0.11459503999765275
SVLPTKTVK	9	Unmodified	_SVLPTKTVK_					0	0	0		ENST00000290846.8_1_22:46733720-46733786:+|nuORF	ENST00000290846.8_1_22:46733720-46733786:+|nuORF	ENST00000290846.8_1_22:46733720-46733786:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.8081970214844	2	486.808042	971.601532	0.095813	4.6643E-05	-0.0065822	-3.2043E-06	0.089231	4.3438E-05	486.80795704506124	22.272	0.77514	22.222	22.038	22.813	-0.049377					51	26	2	0	0	0	0.058995	2	3070	3070;3120		49.554	5.7819	1	665700			46351	9153	26657	26658	56428;56429	56428					0.11459503999765275
SVLPWIILH	9	Unmodified	_SVLPWIILH_					0	0	0		ENSG00000099991|ENST00000263119|CABIN1;nc|ENSG00000099991|Q9Y6J0-2|CABIN1;CABIN1|p.I1015Lfs*44|1|0.05|ENSG00000099991|chr22:24084710-24084711|-/TTGAAAAAAAG|frameshift_variant	ENSG00000099991|ENST00000263119|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8633422851562	2	539.326402	1076.63825	0.57085	0.00030788	0.1322	7.1299E-05	0.70305	0.00037917	539.3264152566366	79.835	0.64999	79.806	79.521	80.171	-0.028923					40	23	2	0	0	0	0.23783	1	20697	20697		18.135	3.2967	1	196160			46352	1509	26658	26659	56430	56430					0.10299800616326138
SVLPWIILH	9	Unmodified	_SVLPWIILH_					0	0	0		ENSG00000099991|ENST00000263119|CABIN1;nc|ENSG00000099991|Q9Y6J0-2|CABIN1;CABIN1|p.I1015Lfs*44|1|0.05|ENSG00000099991|chr22:24084710-24084711|-/TTGAAAAAAAG|frameshift_variant	ENSG00000099991|ENST00000263119|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	539.326402	1076.63825	0.49563	0.00026731	0.16324	8.8037E-05	0.65887	0.00035534	539.3264899342734	79.789	0.56815	79.789	79.467	80.035	0	0.0011819	0.00012296	NaN	18.135	40	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292990			46353	1509	26658	26659							0.10299800616326138
SVLPYFVATK	10	Unmodified	_SVLPYFVATK_					0	0	0		ENSG00000149084|ENST00000278353|HSD17B12;ENST00000533802.5_2_11:43855633-43876795:+|nuORF;ENST00000533090.6_2_11:43852474-43876795:+|nuORF	ENSG00000149084|ENST00000278353|HSD17B12	ENSG00000149084|ENST00000278353|HSD17B12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8212280273438	2	562.82115	1123.62775	0.36824	0.00020725	-0.1164	-6.5513E-05	0.25184	0.00014174	562.8210124811754	58.302	1.0094	58.302	57.986	58.996	0					88	34	4	0	0	0	0.15804	1	14151	14151		37.771	1.2651	1	1572900			46354	4841	26659	26660	56431	56431					0.07087773171224399
SVLPYFVATK	10	Unmodified	_SVLPYFVATK_					0	0	0		ENSG00000149084|ENST00000278353|HSD17B12;ENST00000533802.5_2_11:43855633-43876795:+|nuORF;ENST00000533090.6_2_11:43852474-43876795:+|nuORF	ENSG00000149084|ENST00000278353|HSD17B12	ENSG00000149084|ENST00000278353|HSD17B12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3229370117188	2	562.82115	1123.62775	0.39856	0.00022432	-0.12842	-7.2278E-05	0.27013	0.00015204	562.8209725668111	58.174	0.92349	58.26	57.92	58.843	0.085621					89	32	4	0	0	0	0.15804	1	14123	14123		37.771	4.9856	1	1538700			46355	4841	26659	26660	56432	56432					0.07087773171224399
SVLQAGNQL	9	Unmodified	_SVLQAGNQL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant;UTRN|p.I1307Nfs*3|1|0.28|ENSG00000152818|chr6:144487642-144487643|-/A|frameshift_variant	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2685852050781	2	465.256174	928.497795	0.033091	1.5396E-05	1.4485	0.00067391	1.4816	0.0006893	465.25699342674744	28.863	0.32951	28.864	28.715	29.045	0.0004673					20	11	2	0	0	0	0.24688	1	5089	5089		14.838	0	1	99445			46356	5043	26660	26661	56433	56433					0.03068596892092046
SVLQAGNQL	9	Unmodified	_SVLQAGNQL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant;UTRN|p.I1307Nfs*3|1|0.28|ENSG00000152818|chr6:144487642-144487643|-/A|frameshift_variant	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	465.256174	928.497795	0.034253	1.5936E-05	0.74747	0.00034776	0.78172	0.0003637	465.25649618379236	28.906	0.30166	28.906	28.76	29.062	0	-0.0026981	-0.00056679	NaN	14.838	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110580			46357	5043	26660	26661							0.03068596892092046
SVLQGLLKK	9	Unmodified	_SVLQGLLKK_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000480964.5_1_7:44801441-44805210:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.323974609375	2	493.32386	984.633166	0.30761	0.00015175	0.036524	1.8018E-05	0.34413	0.00016977	493.3237440317521	40.839	0.8807	40.839	40.501	41.382	0					90	32	4	0	0	0	0.0024096	3	8754	8708;8754;8798		106.94	46.866	1	3717600			46358	3048	26661	26662	56434;56435;56436	56435					0.14023496753691234
SVLQGLLKK	9	Unmodified	_SVLQGLLKK_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000480964.5_1_7:44801441-44805210:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.3237609863281	2	493.32386	984.633166	0.52929	0.00026111	-0.22473	-0.00011087	0.30456	0.00015025	493.3236128972145	40.636	1.0113	40.729	40.42	41.431	0.09267					93	37	4	0	0	0	0.0013683	2	8655	8655;8704		118.07	57.994	1	3740000			46359	3048	26661	26662	56437;56438	56437					0.14023496753691234
SVLQGLLKK	9	Unmodified	_SVLQGLLKK_					0	0	0		nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000480964.5_1_7:44801441-44805210:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.32391357421875	2	493.32386	984.633166	0.35089	0.0001731	-0.10552	-5.2056E-05	0.24537	0.00012105	493.3236854260025	40.603	0.94843	40.702	40.368	41.316	0.099407					89	34	4	0	0	0	0.001957	2	8679	8634;8679		110.55	46.866	1	3874600			46360	3048	26661	26662	56439;56440	56440					0.14023496753691234
SVLQIDKPM	9	Unmodified	_SVLQIDKPM_					0	0	0			REV__ENST00000401004.2_1:120904811-120905087:+|nuORF	REV__ENST00000401004.2_1:120904811-120905087:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3115234375	2	515.78371	1029.55287	0.04563	2.3535E-05	-0.40115	-0.0002069	-0.35552	-0.00018337	515.7832708589311	15.22	0.59411	15.11	14.955	15.549	-0.10981					31	20	3	0	0	0	0.25779	1	923	923		6.2058	0.97511	1	48617	+		46361	20706	26662	26663	56441	56441					0.03927267368339926
SVLQLGNIVFK	11	Unmodified	_SVLQLGNIVFK_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.3663330078125	2	609.366256	1216.71796	0.39075	0.00023811	-0.17162	-0.00010458	0.21913	0.00013353	609.3660952616475	70.62	0.69186	70.62	70.378	71.07	0					77	24	4	0	0	0	6.5005E-26	3	17924	17882;17924;17971		222.22	149.25	1	3287000			46362	3708	26663	26664	56442;56443;56444	56443					0.1182682249964273
SVLQLGNIVFK	11	Unmodified	_SVLQLGNIVFK_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.3663940429688	2	609.366256	1216.71796	0.40135	0.00024457	-0.17018	-0.0001037	0.23117	0.00014087	609.366112416786	70.614	0.68598	70.675	70.406	71.092	0.060783					76	24	4	0	0	0	2.7163E-25	3	17918	17870;17918;17968		208.35	135.39	1	3414400			46363	3708	26663	26664	56445;56446;56447	56446					0.1182682249964273
SVLQLGNIVFK	11	Unmodified	_SVLQLGNIVFK_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.3663940429688	2	609.366256	1216.71796	0.37019	0.00022558	-0.061382	-3.7404E-05	0.30881	0.00018818	609.3661609646848	70.682	0.83586	70.657	70.378	71.214	-0.024872					81	29	4	0	0	0	2.7163E-25	3	17922	17878;17922;17969		208.35	135.39	1	2947100			46364	3708	26663	26664	56448;56449;56450	56449					0.1182682249964273
SVLQRWRFRL	10	Unmodified	_SVLQRWRFRL_					0	0	0			REV__ENSG00000185347|ENST00000392523|TEDC1	REV__ENSG00000185347|ENST00000392523|TEDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.8759765625	3	454.270201	1359.78877	-1.462	-0.00066414	1.1924	0.00054166	-0.2696	-0.00012247	454.60495437521956	34.762	0.65808	34.838	34.576	35.234	0.075306					61	23	4	0	0	0	0.32068	1	6979	6979		3.5871	2.4773	1	361650	+		46365	18374	26664	26665	56451	56451					0.12326960327823144
SVLQRWRFRL	10	Unmodified	_SVLQRWRFRL_					0	0	0			REV__ENSG00000185347|ENST00000392523|TEDC1	REV__ENSG00000185347|ENST00000392523|TEDC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	454.270201	1359.78877	-1.357	-0.00061646	1.1267	0.00051181	-0.23038	-0.00010465	454.2707678916165	34.828	0.52908	34.828	34.588	35.118	0	0.002397	0.00021464	NaN	3.5871	46	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365590	+		46366	18374	26664	26665							0.12326960327823144
SVLQRWRFRL	10	Unmodified	_SVLQRWRFRL_					0	0	0			REV__ENSG00000185347|ENST00000392523|TEDC1	REV__ENSG00000185347|ENST00000392523|TEDC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	454.270201	1359.78877	-0.67263	-0.00030555	0.70185	0.00031883	0.029219	1.3273E-05	454.2704916706398	34.734	0.47314	34.812	34.587	35.06	0.077381	-0.014193	-0.0003643	NaN	3.5871	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344670	+		46367	18374	26664	26665							0.12326960327823144
SVLQYFNIHP	10	Unmodified	_SVLQYFNIHP_					0	0	0			REV__ENST00000572176.1_1_17:3838413-3839645:-|nuORF	REV__ENST00000572176.1_1_17:3838413-3839645:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.5481262207031	3	406.548629	1216.62406	-0.47319	-0.00019238	-1.945	-0.00079073	-2.4182	-0.0009831	406.54775344481294	12.579	0.56466	12.511	12.226	12.791	-0.067929					26	18	2	0	0	0	0.39935	1	164	164		1.7423	0	1	45437	+		46368	22419	26665	26666	56452	56452					0.02441103397381994
SVLRQNQVEF	10	Unmodified	_SVLRQNQVEF_					0	0	0		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.8960876464844	3	407.219172	1218.63569	0.1652	6.7273E-05	0.013466	5.4834E-06	0.17867	7.2757E-05	407.21902818495505	36.873	0.8028	36.873	36.511	37.314	0					69	28	4	0	0	0	0.3183	1	7529	7529		8.4443	3.9154	1	532400			46369	7574	26666	26667	56453	56453					0.035113004207232734
SVLRQNQVEF	10	Unmodified	_SVLRQNQVEF_					0	0	0		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.2193603515625	3	407.219172	1218.63569	0.093734	3.817E-05	0.068056	2.7714E-05	0.16179	6.5884E-05	407.219072148158	36.71	0.70216	36.797	36.491	37.193	0.08741					82	25	4	0	0	0	0.34325	1	7519	7519		8.4443	4.5984	1	488060			46370	7574	26666	26667	56454	56454					0.035113004207232734
SVLRQNQVEF	10	Unmodified	_SVLRQNQVEF_					0	0	0		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2190246582031	3	407.219172	1218.63569	0.3648	0.00014855	-0.28301	-0.00011525	0.081785	3.3304E-05	407.21902840675136	36.78	0.98576	36.873	36.377	37.363	0.093014					87	35	4	0	0	0	0.34325	1	7536	7536		8.4443	0.83535	1	396270			46371	7574	26666	26667	56455	56455					0.035113004207232734
SVLRSSWD	8	Unmodified	_SVLRSSWD_					0	0	0		nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000511309.5_1_5:176730986-176733129:+|nuORF	nc|ENSG00000169230|Q9Y255-2|PRELID1	nc|ENSG00000169230|Q9Y255-2|PRELID1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.76666259765625	2	475.240524	948.466495	0.21274	0.00010111	-0.41105	-0.00019535	-0.19831	-9.4244E-05	475.24025207851577	17.448	0.55464	17.388	17.211	17.766	-0.060429					26	18	2	0	0	0	0.34039	1	1655	1655		15.847	3.3156	1	64915			46372	6338	26667	26668	56456	56456					-0.009799761420026698
SVLRTFRLLR	10	Unmodified	_SVLRTFRLLR_					0	0	0		ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000196557|O95180-2|CACNA1H;CACNA1H|p.K1089Rfs*255|1|0.31|ENSG00000196557|chr16:1208118-1208118|C/-|frameshift_variant;nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I	ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000100346|Q9P0X4-3|CACNA1I	ENSG00000196557|ENST00000348261|CACNA1H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.93487548828125	3	420.934818	1259.78262	0.25409	0.00010695	-0.068056	-2.8647E-05	0.18603	7.8307E-05	420.93473861684106	31.945	1.2506	31.987	31.683	32.934	0.042366					117	44	3	0	0	0	0.37568	1	5991	5991		7.9454	3.2295	1	1068100			46373	7879;1575	26668	26669	56457	56457					0.1631244209631859
SVLSMVVLL	9	Unmodified	_SVLSMVVLL_					0	0	0			REV__ENST00000464847.6_2_17:15603096-15603408:+|nuORF	REV__ENST00000464847.6_2_17:15603096-15603408:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.26123046875	2	480.793546	959.57254	0.37559	0.00018058	1.3008	0.00062542	1.6764	0.000806	480.7943556811123	21.222	0.19895	21.169	21.005	21.204	-0.05291					10	6	2	0	0	0	0.24739	1	2776	2776		13.508	0	1	52996	+		46374	21268	26669	26670	56458	56458					0.0911364337912346
SVLSPLLNK	9	Unmodified	_SVLSPLLNK_					0	0	0		nc|ENSG00000151491|Q12929-2|EPS8;ENSG00000151491|ENST00000281172|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80035400390625	2	485.800217	969.585882	0.57038	0.00027709	-0.15978	-7.7622E-05	0.41059	0.00019947	485.80012696758996	50.415	1.4586	50.415	50.077	51.536	0					181	53	6	0	0	0	0.0010463	1	11735	11735		122.18	43.451	1	5411200			46375	4966	26670	26671	56459	56459					0.09987217482705546
SVLTFHICKFV	11	Unmodified	_SVLTFHICKFV_					0	0	0			REV__ENST00000544451.2_1_8:52730731-52730815:-|nuORF	REV__ENST00000544451.2_1_8:52730731-52730815:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.90606689453125	3	431.905648	1292.69511	0.088151	3.8073E-05	1.032	0.00044574	1.1202	0.00048381	431.90616277764326	40.646	1.0397	40.738	40.474	41.513	0.09267					137	38	5	0	0	0	0.43809	1	8791	8791		6.2344	0	1	8517700	+		46376	22155	26671	26672	56460	56460					0.060474801105101506
SVLTWLKTLF	10	Unmodified	_SVLTWLKTLF_					0	0	0			REV__nc|ENSG00000185122|Q00613-2|HSF1	REV__nc|ENSG00000185122|Q00613-2|HSF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.3585205078125	2	604.357899	1206.70125	0.53433	0.00032293	1.0103	0.00061057	1.5446	0.0009335	604.3581213356865	91.2	0.33281	91.291	91.154	91.487	0.090668					43	23	3	0	0	0	0.41512	1	24196	24196		1.6526	0	1	429160	+		46377	18357	26672	26673	56461	56461					0.10616321613701984
SVLVFKKGK	9	Unmodified	_SVLVFKKGK_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7655334472656	2	503.326402	1004.63825	0.19239	9.6835E-05	-0.033244	-1.6732E-05	0.15915	8.0103E-05	503.326250448638	23.515	0.32916	23.442	23.285	23.614	-0.072559					16	11	2	0	0	0	0.25988	1	3458	3458		3.9444	1.8846	1	29609			46378	6350	26673	26674	56462	56462					0.13611800616331493
SVLVNFFEK	9	Unmodified	_SVLVNFFEK_					0	0	0		ENST00000520794.1_1_5:179290450-179293075:-|nuORF;ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B	ENST00000520794.1_1_5:179290450-179293075:-|nuORF	ENST00000520794.1_1_5:179290450-179293075:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.266845703125	2	541.797675	1081.5808	0.48815	0.00026448	-0.4119	-0.00022317	0.076251	4.1313E-05	541.7978955749809	63.107	0.43298	63.107	62.956	63.389	0					23	15	2	0	0	0	0.23216	1	15596	15596		22.658	1.1211	1	242620			46379	7945	26674	26675	56463	56463					0.04326913620070627
SVLVQDKFF	9	Unmodified	_SVLVQDKFF_					0	0	0			REV__nc|ENSG00000127241|P48740-4|MASP1	REV__nc|ENSG00000127241|P48740-4|MASP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2669067382812	2	541.797675	1081.5808	0.57621	0.00031219	0.19143	0.00010372	0.76765	0.00041591	541.797645438557	63.067	0.5463	63.163	62.931	63.477	0.095722					25	19	2	0	0	0	0.23235	1	15552	15552		21.537	2.175	1	272670	+		46380	15333	26675	26676	56464	56464					0.04326913620070627
SVLVQDKFF	9	Unmodified	_SVLVQDKFF_					0	0	0			REV__nc|ENSG00000127241|P48740-4|MASP1	REV__nc|ENSG00000127241|P48740-4|MASP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.266845703125	2	541.797675	1081.5808	0.56947	0.00030854	0.29289	0.00015869	0.86237	0.00046723	541.7978821866233	63.164	0.49167	63.156	62.887	63.379	-0.0085564					29	17	3	0	0	0	0.23235	1	15585	15585		21.537	2.175	1	249850	+		46381	15333	26675	26676	56465	56465					0.04326913620070627
SVLVVELLD	9	Unmodified	_SVLVVELLD_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7816467285156	2	493.792058	985.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.687	1	77.743	77.243	78.243	0.055412								0	0	0	0.21726	1	20055	20055		16.942	0	1				46382	1550	26676	26677	56466	56466					0.07620091525961925
SVLVVELLD	9	Unmodified	_SVLVVELLD_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7813720703125	2	493.792058	985.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.844	1	77.9	77.4	78.4	0.055412								0	0	0	0.17683	1	20103	20103		28.487	6.7402	1				46383	1550	26676	26677	56467	56467					0.07620091525961925
SVLYFFML	8	Unmodified	_SVLYFFML_					0	0	0		nc|ENSG00000163817|Q9NP91-2|SLC6A20;ENSG00000163817|ENST00000358525|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.265869140625	2	510.267164	1018.51978	0.64551	0.00032938	-2.5375	-0.0012948	-1.892	-0.00096544	510.265284915558	50.704	2.0495	50.704	49.516	51.565	0					135	75	3	0	0	0	0.42446	1	11823	11823		14.582	0	1	787740			46384	5738	26677	26678	56468	56468					0.01125685316299041
SVLYSVVTP	9	Unmodified	_SVLYSVVTP_					0	0	0		ENSG00000243729|ENST00000641768|OR5V1	ENSG00000243729|ENST00000641768|OR5V1	ENSG00000243729|ENST00000641768|OR5V1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2374267578125	2	482.771126	963.527698	0.1275	6.1551E-05	-4.213	-0.0020339	-4.0855	-0.0019724	482.76892832437005	24.909	0.29953	24.853	24.748	25.048	-0.055931					15	10	2	0	0	0	0.2322	1	3904	3904		20.454	0	1	50156			46385	8561	26678	26679	56469	56469					0.04447535837425676
SVMAQVRQK	9	Oxidation (M)	_SVM(Oxidation (M))AQVRQK_		SVM(1)AQVRQK		SVM(96)AQVRQK	0	0	1		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000572067.1_1_16:67917790-67918048:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.78955078125	2	531.789858	1061.56516	0.1646	8.7535E-05	-0.15704	-8.3513E-05	0.0075628	4.0218E-06	531.7897976957372	13.474	0.65635	13.474	13.336	13.992	0					54	22	4	0	0	0	0.0037772	1	433	433		96.111	65.474	1	751390			46386	589	26679	26680	56470	56470		69			0.03684303831391844
SVMAQVRQK	9	Oxidation (M)	_SVM(Oxidation (M))AQVRQK_		SVM(1)AQVRQK		SVM(110)AQVRQK	0	0	1		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000572067.1_1_16:67917790-67918048:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7896728515625	2	531.789858	1061.56516	0.0051901	2.76E-06	-0.014697	-7.8156E-06	-0.0095067	-5.0556E-06	531.7899028283744	13.553	0.51596	13.454	13.306	13.822	-0.099291					51	18	4	0	0	0	0.0019475	1	452	452		110.67	74.548	1	763560			46387	589	26679	26680	56471	56471		69			0.03684303831391844
SVMAQVRQK	9	Oxidation (M)	_SVM(Oxidation (M))AQVRQK_		SVM(1)AQVRQK		SVM(83)AQVRQK	0	0	1		ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000572067.1_1_16:67917790-67918048:+|nuORF	ENSG00000038358|ENST00000358933|EDC4	ENSG00000038358|ENST00000358933|EDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7898559570312	2	531.789858	1061.56516	0.097066	5.1619E-05	-0.0044513	-2.3672E-06	0.092614	4.9251E-05	531.7899039597104	13.554	0.61833	13.486	13.329	13.947	-0.067496					56	21	5	0	0	0	0.0079761	1	453	453		82.529	46.402	1	695210			46388	589	26679	26680	56472	56472		69			0.03684303831391844
SVMETFLLY	9	Oxidation (M)	_SVM(Oxidation (M))ETFLLY_		SVM(1)ETFLLY		SVM(110)ETFLLY	0	0	1		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7755737304688	2	559.775551	1117.53655	0.27126	0.00015185	-0.20018	-0.00011206	0.071084	3.9791E-05	559.7754559688251	75.374	1.4937	75.374	74.902	76.396	0					146	53	5	0	0	0	0.0022761	6	19317	19268;19317;19365;19408;19456;19505		108	62.22	1	4358700			46389	4462	26680	26681	56473;56474;56475;56476;56477;56478	56474		564			-0.0175185858840905
SVMETFLLY	9	Oxidation (M)	_SVM(Oxidation (M))ETFLLY_		SVM(1)ETFLLY		SVM(130)ETFLLY	0	0	1		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.775634765625	2	559.775551	1117.53655	0.38295	0.00021437	-0.25338	-0.00014184	0.12957	7.2528E-05	559.7754039921368	75.318	1.3708	75.37	74.917	76.288	0.052361					150	49	5	0	0	0	0.00077644	5	19289	19242;19289;19335;19384;19427		125.62	78.704	1	4427500			46390	4462	26680	26681	56479;56480;56481;56482;56483	56480		564			-0.0175185858840905
SVMETFLLY	9	Oxidation (M)	_SVM(Oxidation (M))ETFLLY_		SVM(1)ETFLLY		SVM(110)ETFLLY	0	0	1		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.7755737304688	2	559.775551	1117.53655	0.44016	0.00024639	-0.37988	-0.00021265	0.060283	3.3745E-05	559.775348008462	75.428	1.2152	75.397	74.922	76.137	-0.031487					144	44	5	0	0	0	0.0022761	5	19305	19261;19305;19351;19399;19444		108	63.59	1	4622000			46391	4462	26680	26681	56484;56485;56486;56487;56488	56485		564			-0.0175185858840905
SVMEVNSGIYR	11	Oxidation (M)	_SVM(Oxidation (M))EVNSGIYR_		SVM(1)EVNSGIYR		SVM(63)EVNSGIYR	0	0	1		ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	635.80859375	2	635.808445	1269.60234	0.40713	0.00025885	0.48353	0.00030743	0.89066	0.00056629	635.8087931591692	34.184	0.47639	34.184	33.969	34.446	0					31	16	3	0	0	0	0.017012	1	6733	6733		62.78	46.631	1	236800			46392	7684	26681	26682	56489	56489		848			-0.02168069413505691
SVMEVNSGIYR	11	Oxidation (M)	_SVM(Oxidation (M))EVNSGIYR_		SVM(1)EVNSGIYR		SVM(82)EVNSGIYR	0	0	1		ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	635.8085327148438	2	635.808445	1269.60234	0.4559	0.00028987	0.093018	5.9141E-05	0.54892	0.00034901	635.808392950254	33.978	0.474	34.045	33.852	34.326	0.0667					32	16	3	0	0	0	0.0039637	1	6655	6655		82.445	57.454	1	208230			46393	7684	26681	26682	56490	56490		848			-0.02168069413505691
SVMEVNSGIYR	11	Oxidation (M)	_SVM(Oxidation (M))EVNSGIYR_					0	0	1		ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	635.808445	1269.60234	0.78687	0.0005003	-0.10494	-6.6724E-05	0.68193	0.00043358	635.8083003318011	34.048	0.53061	34.115	33.875	34.405	0.06636	-7.1587E-05	-0.00028547	NaN	82.445	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216580			46394	7684	26681	26682				848			-0.02168069413505691
SVMGVTVSR	9	Oxidation (M)	_SVM(Oxidation (M))GVTVSR_		SVM(1)GVTVSR		SVM(87)GVTVSR	0	0	1		ENSG00000066084|ENST00000301180|DIP2B;DIP2B|p.Y842Lfs*2|1|0.12|ENSG00000066084|chr12:50706652-50706653|-/T|frameshift_variant	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.2501220703125	2	476.250034	950.485516	0.11032	5.2538E-05	0.0066773	3.1801E-06	0.11699	5.5718E-05	476.25003259487755	24.606	0.47756	24.606	24.395	24.872	0					27	15	2	0	0	0	0.0048951	1	3818	3818		87.258	54.473	1	319020			46395	832	26682	26683	56491	56491		106			0.0082923715740435
SVMGVTVSR	9	Oxidation (M)	_SVM(Oxidation (M))GVTVSR_		SVM(1)GVTVSR		SVM(51)GVTVSR	0	0	1		ENSG00000066084|ENST00000301180|DIP2B;DIP2B|p.Y842Lfs*2|1|0.12|ENSG00000066084|chr12:50706652-50706653|-/T|frameshift_variant	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.75634765625	2	476.250034	950.485516	0.20966	9.985E-05	-0.084567	-4.0275E-05	0.12509	5.9575E-05	476.2500469819394	24.687	0.43171	24.631	24.486	24.918	-0.055931					31	14	4	0	0	0	0.12056	1	3834	3834		51.415	20.779	1	308480			46396	832	26682	26683	56492	56492		106			0.0082923715740435
SVMGVTVSR	9	Oxidation (M)	_SVM(Oxidation (M))GVTVSR_		SVM(1)GVTVSR		SVM(55)GVTVSR	0	0	1		ENSG00000066084|ENST00000301180|DIP2B;DIP2B|p.Y842Lfs*2|1|0.12|ENSG00000066084|chr12:50706652-50706653|-/T|frameshift_variant	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.75634765625	2	476.250034	950.485516	0.016119	7.6766E-06	0.17509	8.3387E-05	0.19121	9.1064E-05	476.25020212845226	24.669	0.46604	24.638	24.456	24.922	-0.031408					34	15	3	0	0	0	0.10763	1	3831	3831		55.235	31.214	1	364590			46397	832	26682	26683	56493	56493		106			0.0082923715740435
SVMIIVRMFH	10	Unmodified	_SVMIIVRMFH_					0	0	0			REV__ENST00000267068.5_2_13:33110518-33110629:-|nuORF	REV__ENST00000267068.5_2_13:33110518-33110629:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2087707519531	3	411.559595	1231.65695	0.30851	0.00012697	-1.4304	-0.00058869	-1.1219	-0.00046172	411.55924776632094	35.951	1.7277	36.034	35.461	37.188	0.082359					190	62	6	0	0	0	0.31691	1	7166	7166		5.4027	0	1	16965000	+		46398	19658	26683	26684	56494	56494					0.050392709242260025
SVMNWQQYWK	10	Unmodified	_SVMNWQQYWK_					0	0	0		KCNMB4|p.G142Qfs*17|1|0.06|ENSG00000135643|chr12:70400294-70400295|-/ACAGTCTTTTTTTATAGAAAGA|frameshift_variant;ENSG00000135643|ENST00000258111|KCNMB4	KCNMB4|p.G142Qfs*17|1|0.06|ENSG00000135643|chr12:70400294-70400295|-/ACAGTCTTTTTTTATAGAAAGA|frameshift_variant	KCNMB4|p.G142Qfs*17|1|0.06|ENSG00000135643|chr12:70400294-70400295|-/ACAGTCTTTTTTTATAGAAAGA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7565002441406	3	457.216774	1368.62849	-0.058589	-2.6788E-05	1.5166	0.00069343	1.458	0.00066664	457.2175216610372	23.187	0.64493	23.1	22.736	23.381	-0.087608					36	22	2	0	0	0	0.32137	1	3451	3451		1.7423	0.28716	1	85092			46399	3890	26684	26685	56495	56495					-0.04107755451354933
SVMQKHWICH	10	Unmodified	_SVMQKHWICH_					0	0	0			REV__ENST00000521973.5_1_8:125516164-125531109:-|nuORF	REV__ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.7557067871094	3	423.539082	1267.59542	-0.41883	-0.00017739	0.94246	0.00039917	0.52363	0.00022178	423.53919053971424	13.363	0.26027	13.264	13.129	13.389	-0.099291					14	8	3	0	0	0	0.32054	1	415	415		1.5923	0	1	31576	+		46400	21910	26685	26686	56496	56496					-0.027676607750663607
SVMQKIIPHY	10	Oxidation (M)	_SVM(Oxidation (M))QKIIPHY_		SVM(1)QKIIPHY		SVM(59)QKIIPHY	0	0	1		ENST00000503943.5_1_5:87524260-87546470:-|nuORF;ENST00000515477.5_1_5:87517271-87564570:-|nuORF;nc|ENSG00000164180|Q8NDZ6-2|TMEM161B;ENSG00000164180|ENST00000296595|TMEM161B	ENST00000503943.5_1_5:87524260-87546470:-|nuORF	ENST00000503943.5_1_5:87524260-87546470:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.22161865234375	3	411.221636	1230.64308	-0.58845	-0.00024198	0.35316	0.00014523	-0.23529	-9.6756E-05	411.22174140936494	35.399	0.54718	35.399	35	35.547	0					50	19	3	0	0	0	0.049822	1	7055	7055		59.052	39.909	1	543620			46401	5805	26686	26687	56497	56497		688			0.03698316696772963
SVMQKIIPHY	10	Oxidation (M)	_SVM(Oxidation (M))QKIIPHY_		SVM(1)QKIIPHY		SVM(59)QKIIPHY	0	0	1		ENST00000503943.5_1_5:87524260-87546470:-|nuORF;ENST00000515477.5_1_5:87517271-87564570:-|nuORF;nc|ENSG00000164180|Q8NDZ6-2|TMEM161B;ENSG00000164180|ENST00000296595|TMEM161B	ENST00000503943.5_1_5:87524260-87546470:-|nuORF	ENST00000503943.5_1_5:87524260-87546470:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2214660644531	3	411.221636	1230.64308	-0.44127	-0.00018146	0.10346	4.2544E-05	-0.33782	-0.00013892	411.22170893040715	35.236	0.49239	35.312	35.017	35.509	0.075302					48	17	4	0	0	0	0.050002	1	7045	7045		59.013	44.175	1	592720			46402	5805	26686	26687	56498	56498		688			0.03698316696772963
SVMQKIIPHY	10	Oxidation (M)	_SVM(Oxidation (M))QKIIPHY_		SVM(1)QKIIPHY		SVM(65)QKIIPHY	0	0	1		ENST00000503943.5_1_5:87524260-87546470:-|nuORF;ENST00000515477.5_1_5:87517271-87564570:-|nuORF;nc|ENSG00000164180|Q8NDZ6-2|TMEM161B;ENSG00000164180|ENST00000296595|TMEM161B	ENST00000503943.5_1_5:87524260-87546470:-|nuORF	ENST00000503943.5_1_5:87524260-87546470:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2215881347656	3	411.221636	1230.64308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.541	1	35.623	35.123	36.123	0.082355								0	0	0	0.042108	1	7128	7128		64.927	40.963	1				46403	5805	26686	26687	56499	56499		688			0.03698316696772963
SVMQKIIPHY	10	Oxidation (M)	_SVM(Oxidation (M))QKIIPHY_		SVM(1)QKIIPHY		SVM(67)QKIIPHY	0	0	1		ENST00000503943.5_1_5:87524260-87546470:-|nuORF;ENST00000515477.5_1_5:87517271-87564570:-|nuORF;nc|ENSG00000164180|Q8NDZ6-2|TMEM161B;ENSG00000164180|ENST00000296595|TMEM161B	ENST00000503943.5_1_5:87524260-87546470:-|nuORF	ENST00000503943.5_1_5:87524260-87546470:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2214660644531	3	411.221636	1230.64308	-0.71258	-0.00029303	0.28763	0.00011828	-0.42495	-0.00017475	411.22178291112084	35.197	0.44238	35.274	34.975	35.418	0.077377					51	15	4	0	0	0	0.024262	1	7020	7020		67.081	56.015	1	544410			46404	5805	26686	26687	56500	56500		688			0.03698316696772963
SVMQKIIPHY	10	Oxidation (M)	_SVM(Oxidation (M))QKIIPHY_		SVM(1)QKIIPHY		SVM(65)QKIIPHY	0	0	1		ENST00000503943.5_1_5:87524260-87546470:-|nuORF;ENST00000515477.5_1_5:87517271-87564570:-|nuORF;nc|ENSG00000164180|Q8NDZ6-2|TMEM161B;ENSG00000164180|ENST00000296595|TMEM161B	ENST00000503943.5_1_5:87524260-87546470:-|nuORF	ENST00000503943.5_1_5:87524260-87546470:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2216796875	3	411.221636	1230.64308	-0.13687	-5.6282E-05	0.20195	8.3047E-05	0.065087	2.6765E-05	411.2217668322113	35.507	0.47161	35.593	35.426	35.898	0.08625					35	16	3	0	0	0	0.026238	1	7114	7114		64.927	45.783	1	695610			46405	5805	26686	26687	56501	56501		688			0.03698316696772963
SVMQPYPLVW	10	Unmodified	_SVMQPYPLVW_					0	0	0		nc|ENSG00000162631|Q9Y2I2-2|NTNG1;ENST00000294649.8_1_1:107691215-107950335:+|nuORF;nc|ENSG00000162631|Q9Y2I2-1|NTNG1;nc|ENSG00000162631|Q9Y2I2-5|NTNG1;nc|ENSG00000162631|Q9Y2I2-4|NTNG1;nc|ENSG00000162631|Q9Y2I2-6|NTNG1;ENSG00000162631|ENST00000370068|NTNG1	nc|ENSG00000162631|Q9Y2I2-2|NTNG1	nc|ENSG00000162631|Q9Y2I2-2|NTNG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.82666015625	2	610.312635	1218.61072	0.23522	0.00014356	-0.68689	-0.00041922	-0.45168	-0.00027566	610.3123878095433	31.085	1.0003	31.085	30.553	31.553	0					92	35	3	0	0	0	0.36786	1	5834	5834		9.3831	0.63772	1	550220			46406	5590	26687	26688	56502	56502					0.010155292937497507
SVMRLTISY	9	Oxidation (M)	_SVM(Oxidation (M))RLTISY_		SVM(1)RLTISY		SVM(130)RLTISY	0	0	1		ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A;HIF1A|p.R754Vfs*2|1|0.13|ENSG00000100644|chr14:61745748-61745748|C/-|frameshift_variant	ENSG00000100644|ENST00000337138|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2875366210938	2	543.286617	1084.55868	0.57092	0.00031018	-0.014692	-7.9818E-06	0.55623	0.00030219	543.2867992785068	46.026	2.1837	46.026	45.64	47.823	0					125	78	2	0	0	0	0.00054549	6	10361	10274;10316;10361;10409;10459;10497		128.57	69.894	1	38618000			46407	1620	26688	26689	56503;56504;56505;56506;56507;56508	56505		199			0.019783658800179182
SVMRLTISY	9	Oxidation (M)	_SVM(Oxidation (M))RLTISY_		SVM(1)RLTISY		SVM(140)RLTISY	0	0	1		ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A;HIF1A|p.R754Vfs*2|1|0.13|ENSG00000100644|chr14:61745748-61745748|C/-|frameshift_variant	ENSG00000100644|ENST00000337138|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2867431640625	2	543.286617	1084.55868	0.42416	0.00023044	0.25907	0.00014075	0.68323	0.00037119	543.2870227724378	45.824	2.343	45.884	45.505	47.848	0.059834					134	85	2	0	0	0	0.00012746	9	10350	10204;10254;10307;10350;10401;10407;10454;10514;10592		136.39	77.713	1	40765000			46408	1620	26688	26689	56509;56510;56511;56512;56513;56514;56515;56516;56517	56512		199			0.019783658800179182
SVMRLTISY	9	Oxidation (M)	_SVM(Oxidation (M))RLTISY_		SVM(1)RLTISY		SVM(130)RLTISY	0	0	1		ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A;HIF1A|p.R754Vfs*2|1|0.13|ENSG00000100644|chr14:61745748-61745748|C/-|frameshift_variant	ENSG00000100644|ENST00000337138|HIF1A	ENSG00000100644|ENST00000337138|HIF1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2870483398438	2	543.286617	1084.55868	0.75375	0.0004095	-0.083701	-4.5474E-05	0.67005	0.00036403	543.2868268235035	45.811	2.2761	45.876	45.516	47.792	0.065048					133	82	2	0	0	0	0.00054549	9	10333	10194;10245;10272;10288;10333;10383;10431;10532;10584		128.57	69.894	1	38325000			46409	1620	26688	26689	56518;56519;56520;56521;56522;56523;56524;56525;56526	56522		199			0.019783658800179182
SVMRPEQIMK	10	2 Oxidation (M)	_SVM(Oxidation (M))RPEQIM(Oxidation (M))K_		SVM(1)RPEQIM(1)K		SVM(40)RPEQIM(40)K	0	0	2		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.5458984375	3	417.545902	1249.61588	-0.24587	-0.00010266	-0.31606	-0.00013197	-0.56194	-0.00023464	417.54600091874255	19.162	1.481	19.162	18.505	19.986	0					165	52	5	0	0	0	0.1372	1	2118	2118		40.317	30.301	1	1931800			46410	7564	26689	26690	56527	56527		832;833			0.0010546509408868587
SVMRPEQIMK	10	2 Oxidation (M)	_SVM(Oxidation (M))RPEQIM(Oxidation (M))K_		SVM(1)RPEQIM(1)K		SVM(48)RPEQIM(48)K	0	0	2		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.5458679199219	3	417.545902	1249.61588	0.063324	2.6441E-05	-0.55888	-0.00023336	-0.49555	-0.00020692	417.5458847600252	19.346	1.4778	19.23	18.648	20.126	-0.11592					152	51	4	0	0	0	0.10156	2	2171	2171;2215		47.724	37.96	1	2021300			46411	7564	26689	26690	56528;56529	56528		832;833			0.0010546509408868587
SVMRPEQIMK	10	2 Oxidation (M)	_SVM(Oxidation (M))RPEQIM(Oxidation (M))K_		SVM(1)RPEQIM(1)K		SVM(49)RPEQIM(49)K	0	0	2		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.5458679199219	3	417.545902	1249.61588	0.038673	1.6148E-05	-0.69523	-0.00029029	-0.65656	-0.00027414	417.54589194290116	19.262	1.4315	19.206	18.63	20.062	-0.055693					163	50	5	0	0	0	0.095005	2	2147	2147;2191		49.159	36.932	1	2141000			46412	7564	26689	26690	56530;56531	56530		832;833			0.0010546509408868587
SVMSTVEWNK	10	Oxidation (M)	_SVM(Oxidation (M))STVEWNK_		SVM(1)STVEWNK		SVM(48)STVEWNK	0	0	1		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.7844848632812	2	598.784438	1195.55432	-0.19818	-0.00011867	1.0928	0.00065432	0.89457	0.00053565	598.785155903121	34.471	0.42473	34.471	34.247	34.672	0					30	14	3	0	0	0	0.10152	1	6801	6801		47.732	31.885	1	243370			46413	1193	26690	26691	56532	56532		142			-0.03563143333553853
SVMSTVEWNK	10	Oxidation (M)	_SVM(Oxidation (M))STVEWNK_		SVM(1)STVEWNK		SVM(57)STVEWNK	0	0	1		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.7846069335938	2	598.784438	1195.55432	-0.18967	-0.00011357	0.65246	0.00039068	0.46279	0.00027711	598.7848586963129	34.32	0.47226	34.386	34.203	34.676	0.06636					33	16	3	0	0	0	0.058704	1	6743	6743		57.108	40.958	1	217240			46414	1193	26690	26691	56533	56533		142			-0.03563143333553853
SVMSTVEWNK	10	Oxidation (M)	_SVM(Oxidation (M))STVEWNK_		SVM(1)STVEWNK		SVM(59)STVEWNK	0	0	1		ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	ENSG00000082153|ENST00000409600|BZW1	ENSG00000082153|ENST00000409600|BZW1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.784912109375	2	598.784438	1195.55432	0.10802	6.4682E-05	0.49137	0.00029422	0.59939	0.00035891	598.78458607622	34.271	0.44971	34.337	34.153	34.603	0.066704					31	15	3	0	0	0	0.049822	1	6725	6725		59.052	42.903	1	184790			46415	1193	26690	26691	56534	56534		142			-0.03563143333553853
SVMTAFTQE	9	Unmodified	_SVMTAFTQE_					0	0	0			REV__nc|ENSG00000211456|Q9NTJ5-2|SACM1L	REV__nc|ENSG00000211456|Q9NTJ5-2|SACM1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7735900878906	2	507.23405	1012.45355	0.18955	9.6145E-05	0.4407	0.00022354	0.63024	0.00031968	507.2343186609573	23.838	0.51771	23.838	23.616	24.134	0					31	17	2	0	0	0	0.25202	1	3524	3524		6.7232	0	1	54625	+		46416	19024	26691	26692	56535	56535					-0.05218175316394991
SVMVRILT	8	Unmodified	_SVMVRILT_					0	0	0			REV__ENST00000471395.1_1_2:70045687-70052644:+|nuORF	REV__ENST00000471395.1_1_2:70045687-70052644:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.7845458984375	2	459.775688	917.536823	-0.099826	-4.5897E-05	-0.060185	-2.7672E-05	-0.16001	-7.3569E-05	459.7756367511673	17.562	0.16017	17.444	17.355	17.515	-0.11739					6	5	2	0	0	0	0.45169	1	1690	1690		5.2307	2.6532	1	8519.8	+		46417	18702	26692	26693	56536	56536					0.07475605922115847
SVNGFHSK	8	Unmodified	_SVNGFHSK_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3;TET3|p.N1450Kfs*21|1|0.29|ENSG00000187605|chr2:74101135-74101136|-/A|frameshift_variant	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.1868591308594	2	438.222134	874.429715	0.34927	0.00015306	-0.20177	-8.8419E-05	0.1475	6.4638E-05	438.22193255723965	33.495	0.46296	33.562	33.323	33.786	0.06636					23	16	2	0	0	0	0.34218	1	6551	6551		9.3474	0	1	142600			46418	7695	26693	26694	56537	56537					-0.012522279679046733
SVNGFHSK	8	Unmodified	_SVNGFHSK_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3;TET3|p.N1450Kfs*21|1|0.29|ENSG00000187605|chr2:74101135-74101136|-/A|frameshift_variant	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	438.222134	874.429715	0.20913	9.1647E-05	-0.43167	-0.00018917	-0.22253	-9.7519E-05	438.22199853280495	33.663	0.49964	33.663	33.365	33.865	0	0.078464	-0.00015906	NaN	9.3474	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118850			46419	7695	26693	26694							-0.012522279679046733
SVNGFHSK	8	Unmodified	_SVNGFHSK_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3;TET3|p.N1450Kfs*21|1|0.29|ENSG00000187605|chr2:74101135-74101136|-/A|frameshift_variant	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	438.222134	874.429715	-0.11153	-4.8873E-05	-0.07746	-3.3945E-05	-0.18899	-8.2818E-05	438.22201514898217	33.461	0.52679	33.528	33.297	33.824	0.066704	-0.056022	0.00015139	NaN	9.3474	22	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164030			46420	7695	26693	26694							-0.012522279679046733
SVNGKVLSK	9	Unmodified	_SVNGKVLSK_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.28289794921875	2	466.282192	930.549831	-0.28754	-0.00013407	-0.11646	-5.4304E-05	-0.404	-0.00018838	466.28283785228376	14.996	2.0485	14.996	14.701	16.749	0					214	71	5	0	0	0	5.8205000000000005E-24	5	885	885;931;979;1026;1079		238.63	85.741	1	31662000			46421	1820	26694	26695	56538;56539;56540;56541;56542	56538					0.08177760305841275
SVNGKVLSK	9	Unmodified	_SVNGKVLSK_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.281982421875	2	466.282192	930.549831	-0.022595	-1.0536E-05	0.0082774	3.8596E-06	-0.014318	-6.676E-06	466.2823230334447	17.247	0.81926	17.247	16.749	17.568	0					55	28	3	0	0	0	0.30064	1	1618	1618		8.7454	2.5396	1	97424			46422	1820	26694	26695	56543	56543					0.08177760305841275
SVNGKVLSK	9	Unmodified	_SVNGKVLSK_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2828674316406	2	466.282192	930.549831	-0.18559	-8.6537E-05	-0.19087	-8.9001E-05	-0.37646	-0.00017554	466.28280256078295	15.077	2.1934	14.968	14.587	16.78	-0.10981					229	76	5	0	0	0	5.8205000000000005E-24	5	956	906;956;1004;1051;1103		238.63	85.741	1	32501000			46423	1820	26694	26695	56544;56545;56546;56547;56548	56545					0.08177760305841275
SVNGKVLSK	9	Unmodified	_SVNGKVLSK_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2828063964844	2	466.282192	930.549831	-0.093632	-4.3659E-05	-0.30062	-0.00014018	-0.39426	-0.00018383	466.282724662873	15.098	1.9135	15.033	14.73	16.644	-0.064414					213	65	5	0	0	0	5.8205000000000005E-24	5	958	912;958;1002;1047;1091		238.63	85.741	1	36378000			46424	1820	26694	26695	56549;56550;56551;56552;56553	56550					0.08177760305841275
SVNGKVLSK	9	Unmodified	_SVNGKVLSK_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.282470703125	2	466.282192	930.549831	0.21934	0.00010227	-0.48428	-0.00022581	-0.26494	-0.00012354	466.28204093601147	17.339	0.97038	17.278	16.648	17.618	-0.060429					59	34	3	0	0	0	0.2719	1	1624	1624		13.042	1.4022	1	86540			46425	1820	26694	26695	56554	56554					0.08177760305841275
SVNILIIACLV	11	Unmodified	_SVNILIIACLV_					0	0	0		ENST00000527932.1_1_1:46080644-46081380:+|nuORF	ENST00000527932.1_1_1:46080644-46081380:+|nuORF	ENST00000527932.1_1_1:46080644-46081380:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.8513793945312	2	579.35176	1156.68897	0.30346	0.00017581	-0.46217	-0.00026776	-0.15872	-9.1952E-05	579.3514784019151	38.658	0.43136	38.749	38.594	39.026	0.090885					23	15	2	0	0	0	0.32231	1	8068	8068		14.405	14.405	1	532230			46426	11575	26695	26696	56555	56555					0.11688961879008275
SVNIQELLL	9	Unmodified	_SVNIQELLL_					0	0	0		ENSG00000178229|ENST00000321545|ZNF543;nc|ENSG00000204524|Q5CZA5-2|ZNF805;ENSG00000204524|ENST00000414468|ZNF805	ENSG00000178229|ENST00000321545|ZNF543	ENSG00000178229|ENST00000321545|ZNF543	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2556762695312	2	514.802957	1027.59136	0.39933	0.00020558	0.34502	0.00017762	0.74435	0.00038319	514.8031359994592	83.37	0.22512	83.352	83.229	83.454	-0.017761					11	8	2	0	0	0	0.24584	1	21768	21768		17.443	3.0373	1	63995			46427	7046	26696	26697	56556	56556					0.0786689627452688
SVNIQELLL	9	Unmodified	_SVNIQELLL_					0	0	0		ENSG00000178229|ENST00000321545|ZNF543;nc|ENSG00000204524|Q5CZA5-2|ZNF805;ENSG00000204524|ENST00000414468|ZNF805	ENSG00000178229|ENST00000321545|ZNF543	ENSG00000178229|ENST00000321545|ZNF543	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	514.802957	1027.59136	0.39096	0.00020127	0.37837	0.00019478	0.76933	0.00039605	514.8030034985369	83.165	0.40565	83.238	83.052	83.458	0.073097	-0.057176	1.3551E-05	NaN	17.443	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123220			46428	7046	26696	26697							0.0786689627452688
SVNKASTVTK	10	Unmodified	_SVNKASTVTK_					0	0	0		ENST00000569733.6_1_16:67575293-67580037:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7957153320312	2	517.795663	1033.57677	0.02368	1.2262E-05	0.42233	0.00021868	0.44601	0.00023094	517.7958789115107	12.569	0.57019	12.569	12.433	13.003	0					44	19	5	0	0	0	0.0040348	1	174	174		97.284	58.669	1	615830			46429	597	26697	26698	56557	56557					0.06132824126370906
SVNKASTVTK	10	Unmodified	_SVNKASTVTK_					0	0	0		ENST00000569733.6_1_16:67575293-67580037:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7957763671875	2	517.795663	1033.57677	0.010279	5.3223E-06	0.29713	0.00015385	0.30741	0.00015917	517.7959129851157	12.575	0.68895	12.478	12.356	13.044	-0.096607					55	23	4	0	0	0	8.0144E-05	1	170	170		133.12	87.384	1	726180			46430	597	26697	26698	56558	56558					0.06132824126370906
SVNKASTVTK	10	Unmodified	_SVNKASTVTK_					0	0	0		ENST00000569733.6_1_16:67575293-67580037:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	ENST00000569733.6_1_16:67575293-67580037:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7957763671875	2	517.795663	1033.57677	-0.16105	-8.3391E-05	0.25067	0.00012979	0.089619	4.6404E-05	517.7958270682828	12.602	0.58734	12.535	12.406	12.993	-0.067496					29	19	2	0	0	0	0.019496	1	185	185		72.276	45.053	1	596530			46431	597	26697	26698	56559	56559					0.06132824126370906
SVNLKEQKQ	9	Unmodified	_SVNLKEQKQ_					0	0	0		ENST00000438423.6_1_15:57579850-57580075:+|nuORF	ENST00000438423.6_1_15:57579850-57580075:+|nuORF	ENST00000438423.6_1_15:57579850-57580075:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2828979492188	2	537.301113	1072.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.46	1	18.402	17.902	18.902	-0.058174								0	0	0	0.21726	1	1937	1937		16.942	1.0951	1				46432	10537	26698	26699	56560	56560					0.05428226500657729
SVNLYKEKMK	10	Unmodified	_SVNLYKEKMK_					0	0	0			REV__nc|ENSG00000293412|O75343|GUCY1B2	REV__nc|ENSG00000293412|O75343|GUCY1B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.56292724609375	3	413.897041	1238.66929	0.083257	3.446E-05	-0.59219	-0.00024511	-0.50893	-0.00021065	413.89835830420145	15.866	0.87221	15.757	15.436	16.308	-0.10982					128	29	6	0	0	0	0.36786	1	1127	1127		5.4027	0.99656	1	596990	+		46433	23261	26699	26700	56561	56561					0.05950585868254166
SVNNSIFYR	9	Unmodified	_SVNNSIFYR_					0	0	0		ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.27978515625	2	550.28018	1098.54581	0.65038	0.00035789	-0.53682	-0.0002954	0.11355	6.2486E-05	550.2795738831488	40.341	1.4421	40.434	39.803	41.246	0.09267					121	52	4	0	0	0	0.069258	1	8558	8558		45.74	5.7902	1	1528300			46434	8239	26700	26701	56562	56562					0.0004767081213685742
SVNPYIVKL	9	Unmodified	_SVNPYIVKL_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8079223632812	2	516.808042	1031.60153	0.62937	0.00032526	-1.1199	-0.0005788	-0.49058	-0.00025354	516.8072984549246	55.036	0.32907	55.036	54.891	55.221	0					20	11	2	0	0	0	0.053988	1	13129	13129		51.415	24.532	1	626250			46435	2926	26701	26702	56563	56563					0.08699503999764602
SVNPYIVKL	9	Unmodified	_SVNPYIVKL_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.8076782226562	2	516.808042	1031.60153	0.56424	0.0002916	-0.87877	-0.00045416	-0.31453	-0.00016255	516.8074646702789	54.986	0.50007	55.05	54.863	55.363	0.063206					26	18	2	0	0	0	0.064268	1	13090	13090		47.594	22.195	1	468620			46436	2926	26701	26702	56564	56564					0.08699503999764602
SVNPYIVKL	9	Unmodified	_SVNPYIVKL_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.8079223632812	2	516.808042	1031.60153	0.49318	0.00025488	-0.46683	-0.00024126	0.026352	1.3619E-05	516.8075834829963	55.107	0.51083	55.088	54.897	55.408	-0.019081					29	18	2	0	0	0	0.069258	1	13137	13137		45.74	19.472	1	758310			46437	2926	26701	26702	56565	56565					0.08699503999764602
SVNQHSVL	8	Unmodified	_SVNQHSVL_					0	0	0			REV__RP1|p.F1384C|1|0.25|ENSG00000104237|chr8:54628033-54628033|T/G|missense_variant	REV__RP1|p.F1384C|1|0.25|ENSG00000104237|chr8:54628033-54628033|T/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.5421447753906	2	442.235242	882.45593	-0.078395	-3.4669E-05	0.16806	7.4322E-05	0.089664	3.9653E-05	442.2352088517422	26.008	1.5513	25.969	25.298	26.85	-0.03867					95	54	3	0	0	0	0.34247	1	4418	4418		8.5933	2.8329	1	1290100	+		46438	14399	26702	26703	56566	56566					0.010000412035765294
SVNQHSVL	8	Unmodified	_SVNQHSVL_					0	0	0			REV__RP1|p.F1384C|1|0.25|ENSG00000104237|chr8:54628033-54628033|T/G|missense_variant	REV__RP1|p.F1384C|1|0.25|ENSG00000104237|chr8:54628033-54628033|T/G|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	442.235242	882.45593	0.027119	1.1993E-05	0.037334	1.651E-05	0.064452	2.8503E-05	442.2352061109037	25.972	0.84525	25.972	25.741	26.586	0	-0.014553	-3.288E-05	NaN	8.5933	72	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1112500	+		46439	14399	26702	26703							0.010000412035765294
SVNQHSVL	8	Unmodified	_SVNQHSVL_					0	0	0			REV__RP1|p.F1384C|1|0.25|ENSG00000104237|chr8:54628033-54628033|T/G|missense_variant	REV__RP1|p.F1384C|1|0.25|ENSG00000104237|chr8:54628033-54628033|T/G|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	442.235242	882.45593	0.13416	5.9331E-05	0.013814	6.109E-06	0.14798	6.544E-05	442.2351548577289	26.04	0.9532	26.018	25.747	26.7	-0.022238	0.031843	-5.3683E-05	NaN	8.5933	78	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1133200	+		46440	14399	26702	26703							0.010000412035765294
SVNRYILQL	9	Unmodified	_SVNRYILQL_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000375218.3_1_1:19440021-19440357:-|nuORF	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3219604492188	2	553.321848	1104.62914	0.3372	0.00018658	-0.45536	-0.00025196	-0.11815	-6.5376E-05	553.3215944829911	58.019	0.64469	58.019	57.768	58.413	0					62	22	4	0	0	0	0.011693	1	14060	14060		76.825	26.892	1	1404300			46441	3321	26703	26704	56567	56567					0.08101407260005544
SVNRYILQL	9	Unmodified	_SVNRYILQL_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000375218.3_1_1:19440021-19440357:-|nuORF	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.32177734375	2	553.321848	1104.62914	0.39206	0.00021693	-0.53731	-0.00029731	-0.14526	-8.0374E-05	553.32152544183	57.836	0.75671	57.921	57.63	58.387	0.085621					69	27	4	0	0	0	0.0073901	1	13971	13971		83.429	33.496	1	1573700			46442	3321	26703	26704	56568	56568					0.08101407260005544
SVNRYILQL	9	Unmodified	_SVNRYILQL_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000375218.3_1_1:19440021-19440357:-|nuORF	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.322021484375	2	553.321848	1104.62914	0.53672	0.00029698	-0.37191	-0.00020579	0.16481	9.1195E-05	553.3216069146963	58.145	0.56762	58.128	57.874	58.442	-0.0172					52	20	3	0	0	0	0.015924	1	14085	14085		70.332	20.399	1	1370100			46443	3321	26703	26704	56569	56569					0.08101407260005544
SVNSHIYQR	9	Unmodified	_SVNSHIYQR_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2836303710938	2	552.283254	1102.55196	0.14957	8.2607E-05	1.0536	0.00058188	1.2032	0.00066449	552.2836241402299	19.039	0.67985	19.039	18.646	19.325	0					58	23	3	0	0	0	0.086462	2	2103	2103;2159		40.239	24.09	1	182370			46444	6985	26704	26705	56570;56571	56570					0.004781890436561298
SVNSHIYQR	9	Unmodified	_SVNSHIYQR_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2833251953125	2	552.283254	1102.55196	0.23933	0.00013218	0.24528	0.00013547	0.48461	0.00026764	552.283417275843	19.171	0.93055	19.055	18.503	19.433	-0.11592					51	32	2	0	0	0	0.21447	2	2203	2147;2203		21.537	9.6277	1	199920			46445	6985	26704	26705	56572;56573	56573					0.004781890436561298
SVNSHIYQR	9	Unmodified	_SVNSHIYQR_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2833251953125	2	552.283254	1102.55196	0.15794	8.7228E-05	0.57793	0.00031918	0.73587	0.00040641	552.2833896935684	19.119	0.88218	19.063	18.541	19.423	-0.055704					58	30	3	0	0	0	0.068498	2	2153	2108;2153		46.022	25.441	1	214330			46446	6985	26704	26705	56574;56575	56575					0.004781890436561298
SVNSTVLVK	9	Unmodified	_SVNSTVLVK_					0	0	0		nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7819519042969	2	473.782025	945.549496	0.19127	9.0622E-05	0.12725	6.0287E-05	0.31852	0.00015091	473.7820334874727	28.832	1.557	28.828	28.57	30.127	-0.0042572					143	53	6	0	0	0	0.0044119	1	5178	5178		91.085	10.189	1	3268100			46447	5472	26705	26706	56576	56576					0.07454340586002672
SVNSTVLVK	9	Unmodified	_SVNSTVLVK_					0	0	0		nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7822265625	2	473.782025	945.549496	0.068333	3.2375E-05	0.23765	0.00011259	0.30598	0.00014497	473.78207824458707	28.823	1.5567	28.824	28.55	30.107	0.0004673					145	54	6	0	0	0	0.058995	1	5233	5233		49.554	1.8223	1	3258100			46448	5472	26705	26706	56577	56577					0.07454340586002672
SVPAQVDAK	9	Unmodified	_SVPAQVDAK_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.75634765625	2	457.750724	913.486896	-0.096204	-4.4038E-05	-2.9237	-0.0013383	-3.0199	-0.0013824	457.7497694771168	23.412	0.14357	23.412	23.336	23.48	0					7	4	2	0	0	0	0.22061	1	3424	3424		24.021	0	1	29414	+		46449	13885	26706	26707	56578	56578					0.026691945178072274
SVPCSIIRDEL	11	Unmodified	_SVPCSIIRDEL_					0	0	0			REV__nc|ENSG00000074621|O60721-3|SLC24A1	REV__nc|ENSG00000074621|O60721-3|SLC24A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2165832519531	3	411.216551	1230.62782	0.085866	3.5309E-05	1.0722	0.00044091	1.1581	0.00047622	411.2169311635563	46.765	1.2801	46.765	46.402	47.682	0					138	45	5	0	0	0	0.37585	1	10703	10703		8.2864	1.663	1	9264400	+		46450	13791	26707	26708	56579	56579					0.021734051089197237
SVPEEGRF	8	Unmodified	_SVPEEGRF_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.3114013671875	2	460.727249	919.439946	0.19917	9.1761E-05	-1.4351	-0.00066117	-1.2359	-0.00056941	460.72762914721443	36.672	0.13415	36.76	36.656	36.79	0.08741					5	4	2	0	0	0	0.34247	1	7455	7455		2.0598	0	1	31071	+		46451	16423	26708	26709	56580	56580					-0.022996650333197977
SVPEFPLSPPK	11	Unmodified	_SVPEFPLSPPK_					0	0	0		nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26229981-26231212:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1	nc|ENSG00000117632|P16949-2|STMN1	nc|ENSG00000117632|P16949-2|STMN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.3302612304688	2	599.329339	1196.64412	0.76789	0.00046022	-0.01129	-6.7663E-06	0.7566	0.00045345	599.329156804925	56.581	1.7593	56.581	55.431	57.19	0					191	64	4	0	0	0	0.0094061	9	13594	13351;13404;13495;13545;13594;13645;13695;13714;13760		70.929	47.139	1	6022500			46452	12675	26709	26710	56581;56582;56583;56584;56585;56586;56587;56588;56589	56585					0.05366854337330551
SVPEFPLSPPK	11	Unmodified	_SVPEFPLSPPK_					0	0	0		nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26229981-26231212:-|nuORF;ENST00000485226.1_1_1:26227942-26230296:-|nuORF;ENSG00000117632|ENST00000455785|STMN1	nc|ENSG00000117632|P16949-2|STMN1	nc|ENSG00000117632|P16949-2|STMN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.3303833007812	2	599.329339	1196.64412	0.86442	0.00051807	-0.071307	-4.2736E-05	0.79311	0.00047534	599.3290888627549	56.478	1.667	56.557	55.43	57.097	0.078674					191	61	4	0	0	0	0.0094061	8	13536	13370;13410;13459;13489;13536;13581;13630;13681		70.929	47.139	1	6333600			46453	12675	26709	26710	56590;56591;56592;56593;56594;56595;56596;56597	56594					0.05366854337330551
SVPEQRSF	8	Unmodified	_SVPEQRSF_					0	0	0		ENST00000265498.5_1_4:140587001-140587097:+|nuORF	ENST00000265498.5_1_4:140587001-140587097:+|nuORF	ENST00000265498.5_1_4:140587001-140587097:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7666015625	2	475.240524	948.466495	0.11319	5.3793E-05	-0.0065337	-3.1051E-06	0.10666	5.0688E-05	475.2402498911572	17.318	0.31958	17.318	17.217	17.537	0					25	11	3	0	0	0	0.34198	1	1622	1622		10.824	0.75	1	58389			46454	9048	26710	26711	56598	56598					-0.009799761419913011
SVPHKIYVN	9	Unmodified	_SVPHKIYVN_					0	0	0			REV__ENST00000592001.5_1_19:38865430-38871817:+|nuORF	REV__ENST00000592001.5_1_19:38865430-38871817:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3197631835938	2	528.795466	1055.57638	0.2763	0.00014611	0.0059372	3.1396E-06	0.28224	0.00014925	528.7953999435335	27.113	0.39376	27.092	26.955	27.349	-0.021412					21	13	2	0	0	0	0.24688	1	4538	4538		14.838	2.3067	1	75826	+		46455	14132	26711	26712	56599	56599					0.0508144919717779
SVPIILAIV	9	Unmodified	_SVPIILAIV_					0	0	0		ENST00000485149.1_1_1:109856516-109859516:-|nuORF;nc|ENSG00000134243|Q99523-2|SORT1;ENSG00000134243|ENST00000256637|SORT1	ENST00000485149.1_1_1:109856516-109859516:-|nuORF	ENST00000485149.1_1_1:109856516-109859516:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.2652893066406	2	462.810054	923.605554	0.2642	0.00012227	-0.53128	-0.00024588	-0.26708	-0.00012361	462.80984020873535	88.722	0.49139	88.719	88.505	88.996	-0.0028381					27	19	2	0	0	0	0.25066	1	23426	23426		11.64	0	1	91700			46456	3763	26712	26713	56600	56600					0.14069593493456978
SVPKSFTF	8	Unmodified	_SVPKSFTF_					0	0	0			REV__ENSG00000160294|ENST00000291688|MCM3AP	REV__ENSG00000160294|ENST00000291688|MCM3AP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7932434082031	2	456.744911	911.475269	0.4051	0.00018503	-0.438	-0.00020005	-0.032901	-1.5027E-05	456.7446992079679	36.979	0.56056	36.979	36.724	37.285	0					33	19	2	0	0	0	0.32886	1	7601	7601		15.847	0	1	173330	+		46457	16893	26713	26714	56601	56601					0.015989974944773166
SVPLPISHK	9	Unmodified	_SVPLPISHK_					0	0	0		USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000480104.5_1_X:47101567-47101732:+|nuORF;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant	USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2923889160156	2	489.292559	976.570566	0.38464	0.0001882	-0.36614	-0.00017915	0.018499	9.0514E-06	489.29229708321037	30.256	1.0875	30.256	29.945	31.033	0					87	38	3	0	0	0	0.20626	2	5471	5471;5629		22.736	1.2041	1	935500			46458	1756	26714	26715	56602;56603	56602					0.0813435068552053
SVPLPISHK	9	Unmodified	_SVPLPISHK_					0	0	0		USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000480104.5_1_X:47101567-47101732:+|nuORF;ENST00000469080.5_1_X:47092634-47106681:+|nuORF	USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant	USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.29254150390625	2	489.292559	976.570566	0.026916	1.317E-05	0.0070418	3.4455E-06	0.033957	1.6615E-05	489.2924680259543	30.275	0.88015	30.302	29.956	30.836	0.027157					82	30	3	0	0	0	0.23767	1	5618	5618		18.146	3.3081	1	943770			46459	1756	26714	26715	56604	56604					0.0813435068552053
SVPLSDALLNK	11	Unmodified	_SVPLSDALLNK_					0	0	0		ENST00000430061.2_1_6:80715671-80721208:+|nuORF;nc|ENSG00000112742|P33981-2|TTK;ENSG00000112742|ENST00000369798|TTK	ENST00000430061.2_1_6:80715671-80721208:+|nuORF	ENST00000430061.2_1_6:80715671-80721208:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.8037719726562	2	578.832246	1155.64994	0.25066	0.00014509	-0.085604	-4.955E-05	0.16505	9.5539E-05	578.8320189084377	51.781	0.40499	51.781	51.592	51.997	0					26	14	2	0	0	0	0.32596	1	12119	12119		15.739	6.9932	1	492960			46460	2458	26715	26716	56605	56605					0.07833952849000525
SVPLSDALLNK	11	Unmodified	_SVPLSDALLNK_					0	0	0		ENST00000430061.2_1_6:80715671-80721208:+|nuORF;nc|ENSG00000112742|P33981-2|TTK;ENSG00000112742|ENST00000369798|TTK	ENST00000430061.2_1_6:80715671-80721208:+|nuORF	ENST00000430061.2_1_6:80715671-80721208:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.8038330078125	2	578.832246	1155.64994	0.33812	0.00019571	-0.11444	-6.6242E-05	0.22368	0.00012947	578.8322775133554	51.753	0.35938	51.8	51.621	51.981	0.046574					24	12	3	0	0	0	0.2981	1	12116	12116		27.223	7.8613	1	724960			46461	2458	26715	26716	56606	56606					0.07833952849000525
SVPLSDALLNK	11	Unmodified	_SVPLSDALLNK_					0	0	0		ENST00000430061.2_1_6:80715671-80721208:+|nuORF;nc|ENSG00000112742|P33981-2|TTK;ENSG00000112742|ENST00000369798|TTK	ENST00000430061.2_1_6:80715671-80721208:+|nuORF	ENST00000430061.2_1_6:80715671-80721208:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.8322143554688	2	578.832246	1155.64994	0.1179	6.8244E-05	-0.084168	-4.8719E-05	0.033731	1.9525E-05	578.8322184248912	51.781	0.43358	51.789	51.665	52.099	0.0084877					35	15	3	0	0	0	0.36569	1	12114	12114		15.739	2.1238	1	596410			46462	2458	26715	26716	56607	56607					0.07833952849000525
SVPPRPAAA	9	Unmodified	_SVPPRPAAA_					0	0	0			REV__ENSG00000171475|ENST00000323571|WIPF2	REV__ENSG00000171475|ENST00000323571|WIPF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5945739746094	2	433.248152	864.481751	-0.46602	-0.0002019	0.27311	0.00011832	-0.19291	-8.3578E-05	433.24814148776454	25.102	1.0843	25.071	24.485	25.57	-0.031408					73	37	3	0	0	0	0.24289	1	3941	3941		13.042	0	1	313110	+		46463	17639	26716	26717	56608	56608					0.04408935445837869
SVPPSPTYPP	10	Unmodified	_SVPPSPTYPP_					0	0	0		ENSG00000088808|ENST00000202556|PPP1R13B;PPP1R13B|p.S577Kfs*15|1|0.31|ENSG00000088808|chr14:103741884-103741885|-/G|frameshift_variant;ENST00000555391.5_1_14:104201493-104210315:-|nuORF	ENSG00000088808|ENST00000202556|PPP1R13B	ENSG00000088808|ENST00000202556|PPP1R13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.269775390625	2	521.266207	1040.51786	0.17838	9.2985E-05	3.3805	0.0017621	3.5589	0.0018551	521.2700302370783	15.254	0.53059	15.144	14.905	15.436	-0.10981					53	18	4	0	0	0	0.3641	1	971	971		10.074	2.465	1	123600			46464	1329	26717	26718	56609	56609					-0.0007765216794268781
SVPQPKEVV	9	Unmodified	_SVPQPKEVV_					0	0	0			REV__nc|ENSG00000197622|Q9NRR8-2|CDC42SE1	REV__nc|ENSG00000197622|Q9NRR8-2|CDC42SE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.3086242675781	2	491.782025	981.549496	0.72618	0.00035712	-0.84149	-0.00041383	-0.11532	-5.671E-05	491.78186916382595	50.78	0.3812	50.827	50.63	51.011	0.046574					21	13	2	0	0	0	0.24289	1	11825	11825		13.042	6.3193	1	153030	+		46465	21522	26718	26719	56610	56610					0.05798340585999995
SVPQRSLL	8	Unmodified	_SVPQRSLL_					0	0	0		nc|ENSG00000123572|Q7Z2Y5-2|NRK;ENSG00000123572|ENST00000243300|NRK	nc|ENSG00000123572|Q7Z2Y5-2|NRK	nc|ENSG00000123572|Q7Z2Y5-2|NRK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2695617675781	2	450.269084	898.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.914	1	75.882	75.382	76.382	-0.031487								0	0	0	0.37664	1	19513	19513		2.5775	0	1				46466	3114	26719	26720	56611	56611					0.07029491134380805
SVPRASILTV	10	Unmodified	_SVPRASILTV_					0	0	0			REV__nc|ENSG00000058085|Q13753-2|LAMC2	REV__nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8167114257812	2	521.816399	1041.61824	0.72764	0.00037969	-0.37989	-0.00019823	0.34775	0.00018146	521.8161460015812	45.517	0.60208	45.517	45.315	45.917	0					36	21	2	0	0	0	0.255	1	10193	10193		21.537	0	1	566370	+		46467	13605	26720	26721	56612	56612					0.09910004885705348
SVPRNIPR	8	Unmodified	_SVPRNIPR_					0	0	0		nc|ENSG00000145147|O94813-3|SLIT2;nc|ENSG00000145147|O94813-2|SLIT2;ENSG00000145147|ENST00000504154|SLIT2	nc|ENSG00000145147|O94813-3|SLIT2	nc|ENSG00000145147|O94813-3|SLIT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2428283691406	2	469.780151	937.545748	0.075479	3.5459E-05	0.50392	0.00023673	0.5794	0.00027219	469.78039069447436	29.036	0.77537	29.049	28.789	29.564	0.013474					46	27	2	0	0	0	0.34378	1	5190	5190		3.9444	0.3479	1	256800			46468	4633	26721	26722	56613	56613					0.07447715602802418
SVPRSKRLPVP	11	Unmodified	_SVPRSKRLPVP_					0	0	0			REV__ENSG00000072786|ENST00000176763|STK10	REV__ENSG00000072786|ENST00000176763|STK10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.7350158691406	3	412.59094	1234.75099	0.14312	5.9051E-05	0.081113	3.3467E-05	0.22423	9.2517E-05	412.5909421412145	43.174	0.21756	43.258	43.166	43.384	0.083996					9	7	2	0	0	0	0.3322	1	9437	9437		2.6312	0.37851	1	95736	+		46469	13764	26722	26723	56614	56614					0.14300449342363208
SVPRTLVHG	9	Unmodified	_SVPRTLVHG_					0	0	0		ENST00000394196.8_1_15:93568209-93568359:+|nuORF	ENST00000394196.8_1_15:93568209-93568359:+|nuORF	ENST00000394196.8_1_15:93568209-93568359:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.25634765625	2	483.279983	964.545414	0.28548	0.00013797	-0.28514	-0.0001378	0.00034093	1.6476E-07	483.27986985906955	30.413	0.6176	30.413	29.97	30.587	0					25	21	2	0	0	0	0.25879	1	5445	5445		4.756	1.8668	1	69772			46470	10065	26723	26724	56615	56615					0.061722958829591335
SVPTARVL	8	Unmodified	_SVPTARVL_					0	0	0			REV__nc|ENSG00000137496|O95998-3|IL18BP	REV__nc|ENSG00000137496|O95998-3|IL18BP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.91497802734375	2	421.758352	841.502152	0.0020291	8.5578E-07	-0.26949	-0.00011366	-0.26746	-0.0001128	421.7582483206413	41.013	0.6065	41.103	40.822	41.429	0.090252					28	22	2	0	0	0	0.34185	1	8716	8716		2.5775	0	1	205450	+		46471	15866	26724	26725	56616	56616					0.0750610610567719
SVPVEPEDRIT	11	Unmodified	_SVPVEPEDRIT_					0	0	0			REV__ENSG00000162512|ENST00000339394|SDC3	REV__ENSG00000162512|ENST00000339394|SDC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.5505676269531	3	414.550587	1240.62993	0.19736	8.1815E-05	-0.31678	-0.00013132	-0.11942	-4.9505E-05	414.55041892856366	19.384	1.0621	19.268	18.838	19.9	-0.11592					78	36	4	0	0	0	0.4112	1	2210	2210		9.7643	1.3199	1	263390	+		46472	16987	26725	26726	56617	56617					0.01924157118378389
SVPYPKLPAK	10	Unmodified	_SVPYPKLPAK_					0	0	0			REV__ENSG00000196305|ENST00000443024|IARS1	REV__ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3291625976562	2	550.329142	1098.64373	0.37321	0.00020539	-0.037331	-2.0544E-05	0.33588	0.00018485	550.3291326628224	23.8	0.58124	23.727	23.474	24.055	-0.072559					50	19	3	0	0	0	0.33104	2	3588	3535;3588		16.149	1.4167	1	255760	+		46473	18641	26726	26727	56618;56619	56619					0.09835479408138781
SVPYPKLPAK	10	Unmodified	_SVPYPKLPAK_					0	0	0			REV__ENSG00000196305|ENST00000443024|IARS1	REV__ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3292236328125	2	550.329142	1098.64373	0.50099	0.00027571	-0.10717	-5.8981E-05	0.39381	0.00021673	550.3289530539353	23.857	0.74603	23.819	23.45	24.196	-0.038927					54	25	3	0	0	0	0.33104	2	3557	3557;3608		16.149	1.3108	1	262060	+		46474	18641	26726	26727	56620;56621	56620					0.09835479408138781
SVQAVLVGK	9	Unmodified	_SVQAVLVGK_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.K2432Nfs*23|1|0.23|ENSG00000005810|chr13:77140155-77140155|T/-|frameshift_variant;MYCBP2|p.E3042Vfs*11|1|0.09|ENSG00000005810|chr13:77097915-77097916|-/GGGAAGA|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.77886962890625	2	450.779285	899.544017	-0.94273	-0.00042496	-0.055255	-2.4908E-05	-0.99799	-0.00044987	450.77915294550047	34.519	0.48822	34.594	34.299	34.788	0.075306					30	17	2	0	0	0	0.073988	1	6822	6822		43.982	14.141	1	195750			46475	342	26727	26728	56622	56622					0.09022661794199394
SVQAVLVGK	9	Unmodified	_SVQAVLVGK_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.K2432Nfs*23|1|0.23|ENSG00000005810|chr13:77140155-77140155|T/-|frameshift_variant;MYCBP2|p.E3042Vfs*11|1|0.09|ENSG00000005810|chr13:77097915-77097916|-/GGGAAGA|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	450.779285	899.544017	-0.88621	-0.00039949	0.59523	0.00026832	-0.29098	-0.00013117	450.77974586172786	34.593	0.60674	34.593	34.336	34.943	0	0.0034816	0.00082086	NaN	43.982	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142040			46476	342	26727	26728							0.09022661794199394
SVQAVLVGK	9	Unmodified	_SVQAVLVGK_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.K2432Nfs*23|1|0.23|ENSG00000005810|chr13:77140155-77140155|T/-|frameshift_variant;MYCBP2|p.E3042Vfs*11|1|0.09|ENSG00000005810|chr13:77097915-77097916|-/GGGAAGA|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	450.779285	899.544017	-0.30027	-0.00013535	-1.0499	-0.00047328	-1.3502	-0.00060863	450.7788054203143	34.504	0.47621	34.582	34.279	34.755	0.077377	-0.007847	-0.00066233	NaN	43.982	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189230			46477	342	26727	26728							0.09022661794199394
SVQDSSVLVQR	11	Unmodified	_SVQDSSVLVQR_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.3282470703125	2	609.327859	1216.64116	0.17913	0.00010915	0.36263	0.00022096	0.54176	0.00033011	609.3279647385982	34.17	0.28203	34.236	34.092	34.374	0.066357					14	9	2	0	0	0	0.078698	1	6745	6745		44.945	17.316	1	103130			46478	1214	26728	26729	56623	56623					0.04150979212499806
SVQEAVFRL	9	Unmodified	_SVQEAVFRL_					0	0	0			REV__nc|ENSG00000144645|Q9BXB5-2|OSBPL10	REV__nc|ENSG00000144645|Q9BXB5-2|OSBPL10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8116455078125	2	524.792924	1047.57129	0.68183	0.00035782	0.35117	0.00018429	1.033	0.00054211	524.7930563803983	48.702	0.87769	48.747	48.416	49.293	0.044888					52	31	2	0	0	0	0.23767	1	11273	11273		18.146	1.0335	1	2892800	+		46479	16249	26729	26730	56624	56624					0.049411453345555856
SVQEEKSPI	9	Unmodified	_SVQEEKSPI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.766357421875	2	508.766571	1015.51859	0.28142	0.00014318	0.63671	0.00032394	0.91813	0.00046712	508.7668001066981	17.022	0.9395	17.022	16.659	17.598	0					86	32	3	0	0	0	0.28225	1	1458	1458		11.495	0.6952	1	497270			46480	5186	26730	26731	56625	56625					0.011451424810957178
SVQENIQQK	9	Unmodified	_SVQENIQQK_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2828979492188	2	537.28292	1072.55129	0.17227	9.2559E-05	-0.075923	-4.0792E-05	0.096351	5.1768E-05	537.282851931636	18.402	0.67157	18.344	18.145	18.816	-0.058174					54	23	3	0	0	0	0.152	1	1937	1937		43.982	16.759	1	263040			46481	4124	26731	26732	56626	56626					0.017913496039454913
SVQENIQQK	9	Unmodified	_SVQENIQQK_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	537.28292	1072.55129	0.35475	0.0001906	-0.15116	-8.1216E-05	0.20359	0.00010938	537.282751326026	18.222	0.79025	18.222	18.024	18.814	0	-0.048434	6.1444E-05	NaN	87.258	49	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207420			46482	4124	26731	26732							0.017913496039454913
SVQENIQQK	9	Unmodified	_SVQENIQQK_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	537.28292	1072.55129	0.19633	0.00010549	-0.58262	-0.00031303	-0.38628	-0.00020754	537.2828273827769	18.364	0.77201	18.246	18.038	18.81	-0.11739	-0.024671	-0.00040218	NaN	87.258	61	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249330			46483	4124	26731	26732							0.017913496039454913
SVQETVLPIK	10	Unmodified	_SVQETVLPIK_					0	0	0		nc|ENSG00000169057|P51608|MECP2;ENSG00000169057|ENST00000453960|MECP2	nc|ENSG00000169057|P51608|MECP2	nc|ENSG00000169057|P51608|MECP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3294677734375	2	557.329339	1112.64412	0.16091	8.968E-05	1.0025	0.00055875	1.1635	0.00064843	557.3299024987144	45.811	0.90705	45.87	45.703	46.61	0.059837					59	32	3	0	0	0	0.012937	2	10311	10259;10311		79.427	29.032	1	2024100			46484	6325	26732	26733	56627;56628	56628					0.0923085433732922
SVQETVLPIK	10	Unmodified	_SVQETVLPIK_					0	0	0		nc|ENSG00000169057|P51608|MECP2;ENSG00000169057|ENST00000453960|MECP2	nc|ENSG00000169057|P51608|MECP2	nc|ENSG00000169057|P51608|MECP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3299560546875	2	557.329339	1112.64412	0.43582	0.00024289	0.33308	0.00018563	0.76889	0.00042853	557.329455856751	45.861	0.63221	45.926	45.647	46.279	0.065048					57	20	3	0	0	0	0.0053513	2	10258	10258;10312		89.609	25.648	1	1881600			46485	6325	26732	26733	56629;56630	56629					0.0923085433732922
SVQETVLPIK	10	Unmodified	_SVQETVLPIK_					0	0	0		nc|ENSG00000169057|P51608|MECP2;ENSG00000169057|ENST00000453960|MECP2	nc|ENSG00000169057|P51608|MECP2	nc|ENSG00000169057|P51608|MECP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	557.329339	1112.64412	0.59321	0.00033061	-0.42724	-0.00023812	0.16596	9.2497E-05	557.3295287859609	45.915	0.63165	45.915	45.64	46.271	0	0.011356	-0.00083285	NaN	89.609	78	22	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2043500			46486	6325	26732	26733							0.0923085433732922
SVQGAALVQI	10	Unmodified	_SVQGAALVQI_					0	0	0		nc|ENSG00000196408|Q8NFA2-4|NOXO1;ENSG00000196408|ENST00000356120|NOXO1;nc|ENSG00000196408|Q8NFA2-2|NOXO1;nc|ENSG00000196408|Q8NFA2|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.28753662109375	2	493.287474	984.560395	0.3863	0.00019056	-0.20031	-9.8809E-05	0.186	9.1749E-05	493.28729867115595	67.648	0.62415	67.648	67.398	68.022	0					51	21	3	0	0	0	0.010092	2	17015	16966;17015		82.529	3.822	1	834880			46487	7858	26733	26734	56631;56632	56632					0.06749742960278127
SVQGAALVQI	10	Unmodified	_SVQGAALVQI_					0	0	0		nc|ENSG00000196408|Q8NFA2-4|NOXO1;ENSG00000196408|ENST00000356120|NOXO1;nc|ENSG00000196408|Q8NFA2-2|NOXO1;nc|ENSG00000196408|Q8NFA2|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.287474	984.560395	0.27353	0.00013493	0.016513	8.1457E-06	0.29004	0.00014307	493.2874239612724	67.681	0.54746	67.665	67.393	67.941	-0.016296	0.0074398	0.00014567	NaN	82.529	50	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	720240			46488	7858	26733	26734							0.06749742960278127
SVQGFFLNH	9	Unmodified	_SVQGFFLNH_					0	0	0		ENSG00000180011|ENST00000322342|PTGR3;nc|ENSG00000180011|Q8N4Q0-2|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.764404296875	2	524.764166	1047.51378	0.76816	0.0004031	1.3988	0.00073404	2.167	0.0011371	524.7651596735069	54.018	1.2209	54.018	53.723	54.943	0					79	44	3	0	0	0	0.001957	1	12807	12807		110.55	58.284	1	1184400			46489	7162	26734	26735	56633	56633					-0.008076968710156507
SVQGFFLNH	9	Unmodified	_SVQGFFLNH_					0	0	0		ENSG00000180011|ENST00000322342|PTGR3;nc|ENSG00000180011|Q8N4Q0-2|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7643432617188	2	524.764166	1047.51378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.994	1	54.052	53.552	54.552	0.058052								0	0	0	0.010523	1	12790	12790		79.596	35.738	1				46490	7162	26734	26735	56634	56634					-0.008076968710156507
SVQGFFLNH	9	Unmodified	_SVQGFFLNH_					0	0	0		ENSG00000180011|ENST00000322342|PTGR3;nc|ENSG00000180011|Q8N4Q0-2|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7645874023438	2	524.764166	1047.51378	0.67081	0.00035201	0.86624	0.00045457	1.537	0.00080659	524.7647398448566	54.25	0.89247	54.234	53.738	54.631	-0.015919					70	31	4	0	0	0	0.0028542	2	12850	12850;12907		103.42	63.462	1	1343300			46491	7162	26734	26735	56635;56636	56635					-0.008076968710156507
SVQGIIIYR	9	Unmodified	_SVQGIIIYR_					0	0	0		ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5	ENST00000406156.2_1_6:121975405-121975696:+|nuORF	ENST00000406156.2_1_6:121975405-121975696:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.811279296875	2	524.811116	1047.60768	0.76134	0.00039956	-0.4235	-0.00022226	0.33784	0.0001773	524.8109879057989	48.022	1.5603	48.022	47.682	49.243	0					177	55	5	0	0	0	0.0011116	9	10905	10905;10957;11002;11047;11095;11117;11162;11214;11221		121.35	17.992	1	60625000			46492	324	26735	26736	56637;56638;56639;56640;56641;56642;56643;56644;56645	56637					0.08578022231267823
SVQGIIIYR	9	Unmodified	_SVQGIIIYR_					0	0	0		ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5	ENST00000406156.2_1_6:121975405-121975696:+|nuORF	ENST00000406156.2_1_6:121975405-121975696:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8114624023438	2	524.811116	1047.60768	0.86001	0.00045134	-0.53331	-0.00027989	0.3267	0.00017145	524.8109751147756	48.005	1.6245	48.052	47.695	49.32	0.047523					234	59	6	0	0	0	0.0011116	5	10985	10898;10944;10985;11035;11086		121.35	28.693	1	64032000			46493	324	26735	26736	56646;56647;56648;56649;56650	56648					0.08578022231267823
SVQGIIIYR	9	Unmodified	_SVQGIIIYR_					0	0	0		ENST00000406156.2_1_6:121975405-121975696:+|nuORF;ENST00000435239.1_1_7:32511604-32512018:+|nuORF;ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000005022|ENST00000317881|SLC25A5	ENST00000406156.2_1_6:121975405-121975696:+|nuORF	ENST00000406156.2_1_6:121975405-121975696:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8117065429688	2	524.811116	1047.60768	0.72098	0.00037838	-0.42362	-0.00022232	0.29737	0.00015606	524.8110152185698	47.958	1.5317	48.001	47.72	49.252	0.04332					205	56	5	0	0	0	0.0011116	4	10875	10875;10925;10966;11014		121.35	17.992	1	67073000			46494	324	26735	26736	56651;56652;56653;56654	56651					0.08578022231267823
SVQHVDAAEK	10	Unmodified	_SVQHVDAAEK_					0	0	0		ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2752075195312	2	542.275095	1082.53564	0.1457	7.9007E-05	0.046553	2.5244E-05	0.19225	0.00010425	542.2750978570555	13.614	0.59764	13.614	13.457	14.055	0					60	20	4	0	0	0	0.00035921	2	469	469;533		129.39	68.298	1	1166000			46495	12109	26736	26737	56655;56656	56655					-0.0023293691310755094
SVQHVDAAEK	10	Unmodified	_SVQHVDAAEK_					0	0	0		ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2753295898438	2	542.275095	1082.53564	0.15556	8.4356E-05	0.18858	0.00010226	0.34414	0.00018662	542.2751986192665	13.686	0.63882	13.586	13.416	14.054	-0.099291					73	22	5	0	0	0	0.0048709	1	488	488		92.409	39.093	1	1004000			46496	12109	26736	26737	56657	56657					-0.0023293691310755094
SVQHVDAAEK	10	Unmodified	_SVQHVDAAEK_					0	0	0		ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	ENST00000585682.5_1_4:159092526-159092595:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2752075195312	2	542.275095	1082.53564	0.19925	0.00010805	0.13098	7.1025E-05	0.33022	0.00017907	542.2751567680456	13.712	0.54272	13.646	13.494	14.037	-0.066067					55	18	5	0	0	0	0.0048709	2	500	500;554		92.409	46.387	1	1144600			46497	12109	26736	26737	56658;56659	56658					-0.0023293691310755094
SVQIQRPS	8	Unmodified	_SVQIQRPS_					0	0	0			REV__nc|ENSG00000211899|P01871-1|IGHM	REV__nc|ENSG00000211899|P01871-1|IGHM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7798156738281	2	457.756341	913.498129	-0.1034	-4.733E-05	0.72895	0.00033368	0.62556	0.00028635	457.75663253589767	23.324	0.65934	23.324	23.11	23.769	0					36	22	2	0	0	0	0.34226	1	3362	3362		10.074	2.1638	1	223740	+		46498	23186	26737	26738	56660	56660					0.03792016611953386
SVQKLLAAE	9	Unmodified	_SVQKLLAAE_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;PCNT|p.S3190Lfs*20|1|0.06|ENSG00000160299|chr21:46441029-46441030|-/TAACA|frameshift_variant;PCNT|p.L3177Gfs*37|1|0.25|ENSG00000160299|chr21:46440989-46440990|TT/-|frameshift_variant;ENSG00000160299|ENST00000359568|PCNT	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2431945800781	2	479.782025	957.549496	0.28445	0.00013648	-1.4309	-0.00068653	-1.1465	-0.00055006	479.78164002449176	32.776	0.29786	32.832	32.704	33.002	0.055309					16	10	2	0	0	0	0.25123	1	6303	6303		8.1555	0	1	91147			46499	5457	26738	26739	56661	56661					0.0690234058599799
SVQKPLDYY	9	Unmodified	_SVQKPLDYY_					0	0	0		nc|ENSG00000117308|Q14376-2|GALE;ENSG00000117308|ENST00000617979|GALE;ENST00000459934.5_1_1:24122658-24127224:-|nuORF	nc|ENSG00000117308|Q14376-2|GALE	nc|ENSG00000117308|Q14376-2|GALE	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7844848632812	2	556.784764	1111.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.102	1	41.102	40.602	41.602	0								0	0	0	0.094536	1	8826	8826		47.594	21.326	1				46500	2788	26739	26740	56662	56662					0.0036601937779323634
SVQLSITKK	9	Unmodified	_SVQLSITKK_					0	0	0		ENST00000415531.5_1_1:35496252-35497220:-|nuORF	ENST00000415531.5_1_1:35496252-35497220:-|nuORF	ENST00000415531.5_1_1:35496252-35497220:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.3110046386719	2	502.310949	1002.60735	0.31476	0.00015811	-0.27439	-0.00013783	0.040371	2.0279E-05	502.3107361330093	24.679	0.61579	24.679	24.395	25.011	0					47	20	3	0	0	0	0.10812	2	3810	3810;3864		37.075	7.2341	1	326540			46501	10310	26740	26741	56663;56664	56663					0.10614602511407156
SVQLSITKK	9	Unmodified	_SVQLSITKK_					0	0	0		ENST00000415531.5_1_1:35496252-35497220:-|nuORF	ENST00000415531.5_1_1:35496252-35497220:-|nuORF	ENST00000415531.5_1_1:35496252-35497220:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.3110046386719	2	502.310949	1002.60735	0.2699	0.00013558	-0.20405	-0.00010249	0.065858	3.3081E-05	502.31074198409516	24.747	0.5881	24.691	24.46	25.048	-0.055931					48	20	3	0	0	0	0.073988	1	3862	3862		43.982	16.353	1	348370			46502	10310	26740	26741	56665	56665					0.10614602511407156
SVQLSITKK	9	Unmodified	_SVQLSITKK_					0	0	0		ENST00000415531.5_1_1:35496252-35497220:-|nuORF	ENST00000415531.5_1_1:35496252-35497220:-|nuORF	ENST00000415531.5_1_1:35496252-35497220:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.31103515625	2	502.310949	1002.60735	0.069778	3.505E-05	0.085523	4.2959E-05	0.1553	7.8009E-05	502.31093286470593	24.717	0.78105	24.686	24.456	25.237	-0.031408					53	26	3	0	0	0	0.027957	2	3823	3823;3878		61.09	15.35	1	340640			46503	10310	26740	26741	56666;56667	56666					0.10614602511407156
SVQMDPLLVV	10	Unmodified	_SVQMDPLLVV_					0	0	0		ENST00000226004.7_1_17:41845677-41845854:-|nuORF	ENST00000226004.7_1_17:41845677-41845854:-|nuORF	ENST00000226004.7_1_17:41845677-41845854:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7871704101562	2	550.804642	1099.59473	0.22563	0.00012428	-0.73484	-0.00040475	-0.50921	-0.00028047	550.8045080577248	15.543	0.6601	15.433	15.093	15.753	-0.10981					40	22	3	0	0	0	0.40532	1	1064	1064		2.4985	0.43874	1	68119			46504	8846	26741	26742	56668	56668					0.04891823056891553
SVQNHEVRRQK	11	Unmodified	_SVQNHEVRRQK_					0	0	0			REV__nc|ENSG00000120802|P42167-3|TMPO	REV__nc|ENSG00000120802|P42167-3|TMPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.9201965332031	3	460.920008	1379.73819	0.28855	0.000133	-0.26751	-0.0001233	0.02104	9.6978E-06	460.91989191548555	47.967	1.4737	47.967	47.162	48.636	0					114	52	3	0	0	0	0.43513	1	10902	10902		6.6235	2.2173	1	1102000	+		46505	22969	26742	26743	56669	56669					0.06351386212168109
SVQNHEVRRQK	11	Unmodified	_SVQNHEVRRQK_					0	0	0			REV__nc|ENSG00000120802|P42167-3|TMPO	REV__nc|ENSG00000120802|P42167-3|TMPO	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	460.920008	1379.73819	0.28855	0.000133	-0.26751	-0.0001233	0.02104	9.6978E-06	460.91989191548555	47.967	1.4737	47.967	47.162	48.636	0	-0.10154	-1.9952E-06	NaN	6.6235	114	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1102000	+		46506	22969	26742	26743							0.06351386212168109
SVQPRRAEKHI	11	Unmodified	_SVQPRRAEKHI_					0	0	0		ENSG00000100368|ENST00000403662|CSF2RB;nc|ENSG00000100368|P32927-2|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2555236816406	3	440.921349	1319.74222	0.30676	0.00013526	-0.61961	-0.0002732	-0.31285	-0.00013794	440.92119103289565	29.103	0.85159	29.103	28.699	29.551	0					68	30	4	0	0	0	0.4112	1	5232	5232		9.7643	0.52048	1	422700			46507	1582	26743	26744	56670	56670					0.095134757058986
SVQPRRAEKHI	11	Unmodified	_SVQPRRAEKHI_					0	0	0		ENSG00000100368|ENST00000403662|CSF2RB;nc|ENSG00000100368|P32927-2|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.921142578125	3	440.921349	1319.74222	0.10778	4.7524E-05	-0.5189	-0.0002288	-0.41112	-0.00018127	441.25527482485376	29.014	0.91426	29.027	28.645	29.56	0.012266					74	31	4	0	0	0	0.32493	1	5181	5181		19.987	8.3555	1	471690			46508	1582	26743	26744	56671	56671					0.095134757058986
SVQPRRAEKHI	11	Unmodified	_SVQPRRAEKHI_					0	0	0		ENSG00000100368|ENST00000403662|CSF2RB;nc|ENSG00000100368|P32927-2|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	ENSG00000100368|ENST00000403662|CSF2RB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.92120361328125	3	440.921349	1319.74222	0.018485	8.1502E-06	-0.22516	-9.9279E-05	-0.20668	-9.1129E-05	440.9213182810753	29.099	0.94923	29.112	28.674	29.623	0.013474					77	33	4	0	0	0	0.36722	1	5202	5202		15.538	3.9071	1	410670			46509	1582	26743	26744	56672	56672					0.095134757058986
SVQPSPVVF	9	Unmodified	_SVQPSPVVF_					0	0	0		ENST00000329421.7_1_1:32799750-32799822:-|nuORF	ENST00000329421.7_1_1:32799750-32799822:-|nuORF	ENST00000329421.7_1_1:32799750-32799822:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2767639160156	2	480.263468	958.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.364	1	47.417	46.917	47.917	0.052574								0	0	0	0.23367	1	10747	10747		11.64	1.4569	1				46510	9437	26744	26745	56673	56673					0.031466690402339736
SVQQRLEELQL	11	Unmodified	_SVQQRLEELQL_					0	0	0			REV__nc|ENSG00000138768|O60763-2|USO1	REV__nc|ENSG00000138768|O60763-2|USO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.5145568847656	3	448.249019	1341.72523	0.20432	9.1585E-05	-1.8353	-0.00082267	-1.631	-0.00073109	448.24765952111716	29.385	1.1829	29.397	28.675	29.858	0.012266					44	19	4	0	0	0	0.3325	1	5311	5311		4.1166	1.2733	1	179640	+		46511	23012	26745	26746	56674	56674					0.06803510309441663
SVQRMMSAAEF	11	Unmodified	_SVQRMMSAAEF_					0	0	0			REV__JAK1|p.L722Wfs*49|1|0.27|ENSG00000162434|chr1:64844841-64844841|G/-|frameshift_variant	REV__JAK1|p.L722Wfs*49|1|0.27|ENSG00000162434|chr1:64844841-64844841|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.922607421875	3	419.530252	1255.56893	-0.046053	-1.9321E-05	0.82088	0.00034439	0.77483	0.00032506	419.53064018138497	28.952	0.44099	28.965	28.699	29.14	0.013475					25	15	2	0	0	0	0.33238	1	5036	5036		1.3296	0.55311	1	196110	+		46512	16983	26746	26747	56675	56675					-0.048633944570610765
SVQRPGLAR	9	Unmodified	_SVQRPGLAR_					0	0	0		nc|ENSG00000102901|Q96BT3-2|CENPT;ENST00000565157.5_1_16:67864257-67867798:-|nuORF;ENSG00000102901|ENST00000562787|CENPT;ENST00000569862.5_1_16:67865068-67866179:-|nuORF;ENST00000562947.5_1_16:67864542-67866179:-|nuORF;ENST00000562513.6_1_16:67862078-67865741:-|nuORF	nc|ENSG00000102901|Q96BT3-2|CENPT	nc|ENSG00000102901|Q96BT3-2|CENPT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.67388916015625	2	492.290882	982.567212	0.18254	8.9864E-05	-0.36923	-0.00018177	-0.18669	-9.1906E-05	492.29088135285303	18.749	0.67631	18.749	18.419	19.095	0					46	23	3	0	0	0	0.25123	1	2043	2043		12.241	4.9514	1	138750			46513	1791	26747	26748	56676	56676					0.07523100631499346
SVQRPGLAR	9	Unmodified	_SVQRPGLAR_					0	0	0		nc|ENSG00000102901|Q96BT3-2|CENPT;ENST00000565157.5_1_16:67864257-67867798:-|nuORF;ENSG00000102901|ENST00000562787|CENPT;ENST00000569862.5_1_16:67865068-67866179:-|nuORF;ENST00000562947.5_1_16:67864542-67866179:-|nuORF;ENST00000562513.6_1_16:67862078-67865741:-|nuORF	nc|ENSG00000102901|Q96BT3-2|CENPT	nc|ENSG00000102901|Q96BT3-2|CENPT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.6738586425781	2	492.290882	982.567212	0.045337	2.2319E-05	-0.05352	-2.6347E-05	-0.0081827	-4.0283E-06	492.29095868809225	18.854	0.8223	18.796	18.458	19.28	-0.058172					44	28	2	0	0	0	0.25123	1	2069	2069		12.241	5.5175	1	103990			46514	1791	26747	26748	56677	56677					0.07523100631499346
SVQRYVINH	9	Unmodified	_SVQRYVINH_					0	0	0		nc|ENSG00000116678|P48357-5|LEPR;nc|ENSG00000116678|P48357-2|LEPR;nc|ENSG00000116678|P48357-4|LEPR;nc|ENSG00000116678|P48357-3|LEPR;ENSG00000116678|ENST00000349533|LEPR	nc|ENSG00000116678|P48357-5|LEPR	nc|ENSG00000116678|P48357-5|LEPR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.31201171875	2	558.301447	1114.58834	0.20704	0.00011559	-0.25335	-0.00014145	-0.046313	-2.5857E-05	558.3012371603072	25.305	0.49894	25.305	25.064	25.562	0					42	16	3	0	0	0	0.074552	2	3994	3994;4008		43.772	21.036	1	234760			46515	2738	26748	26749	56678;56679	56678					0.03563065940352317
SVQRYVINH	9	Unmodified	_SVQRYVINH_					0	0	0		nc|ENSG00000116678|P48357-5|LEPR;nc|ENSG00000116678|P48357-2|LEPR;nc|ENSG00000116678|P48357-4|LEPR;nc|ENSG00000116678|P48357-3|LEPR;ENSG00000116678|ENST00000349533|LEPR	nc|ENSG00000116678|P48357-5|LEPR	nc|ENSG00000116678|P48357-5|LEPR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3014526367188	2	558.301447	1114.58834	0.091341	5.0996E-05	-0.20074	-0.00011207	-0.1094	-6.1077E-05	558.301266742062	25.359	0.5724	25.303	25.048	25.62	-0.055931					42	19	3	0	0	0	0.069258	2	4045	4025;4045		45.74	23.004	1	277250			46516	2738	26748	26749	56680;56681	56681					0.03563065940352317
SVQRYVINH	9	Unmodified	_SVQRYVINH_					0	0	0		nc|ENSG00000116678|P48357-5|LEPR;nc|ENSG00000116678|P48357-2|LEPR;nc|ENSG00000116678|P48357-4|LEPR;nc|ENSG00000116678|P48357-3|LEPR;ENSG00000116678|ENST00000349533|LEPR	nc|ENSG00000116678|P48357-5|LEPR	nc|ENSG00000116678|P48357-5|LEPR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3013305664062	2	558.301447	1114.58834	-0.12682	-7.0802E-05	0.19809	0.0001106	0.071278	3.9794E-05	558.3014105658428	25.405	0.47143	25.374	25.098	25.57	-0.03141					40	16	3	0	0	0	0.086462	1	4033	4033		40.239	17.503	1	277100			46517	2738	26748	26749	56682	56682					0.03563065940352317
SVQSASSTVKK	11	Unmodified	_SVQSASSTVKK_					0	0	0		nc|ENSG00000129680|Q8IWC1-2|MAP7D3;nc|ENSG00000129680|Q8IWC1-3|MAP7D3;nc|ENSG00000129680|Q8IWC1-4|MAP7D3;ENSG00000129680|ENST00000316077|MAP7D3	nc|ENSG00000129680|Q8IWC1-2|MAP7D3	nc|ENSG00000129680|Q8IWC1-2|MAP7D3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.3120727539062	2	561.311677	1120.6088	-0.045763	-2.5688E-05	0.17353	9.7405E-05	0.12777	7.1717E-05	561.3117854355148	13.444	0.43132	13.444	13.309	13.74	0					25	14	2	0	0	0	0.062106	1	424	424		49.742	29.327	1	285650			46518	3437	26749	26750	56683	56683					0.05332191809497999
SVQSASSTVKK	11	Unmodified	_SVQSASSTVKK_					0	0	0		nc|ENSG00000129680|Q8IWC1-2|MAP7D3;nc|ENSG00000129680|Q8IWC1-3|MAP7D3;nc|ENSG00000129680|Q8IWC1-4|MAP7D3;ENSG00000129680|ENST00000316077|MAP7D3	nc|ENSG00000129680|Q8IWC1-2|MAP7D3	nc|ENSG00000129680|Q8IWC1-2|MAP7D3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3117065429688	2	561.311677	1120.6088	-0.0072164	-4.0507E-06	0.11114	6.2383E-05	0.10392	5.8333E-05	561.3117683369388	13.514	0.38776	13.415	13.276	13.663	-0.09929					31	13	3	0	0	0	0.16642	1	449	449		34.222	34.222	1	259270			46519	3437	26749	26750	56684	56684					0.05332191809497999
SVQSASSTVKK	11	Unmodified	_SVQSASSTVKK_					0	0	0		nc|ENSG00000129680|Q8IWC1-2|MAP7D3;nc|ENSG00000129680|Q8IWC1-3|MAP7D3;nc|ENSG00000129680|Q8IWC1-4|MAP7D3;ENSG00000129680|ENST00000316077|MAP7D3	nc|ENSG00000129680|Q8IWC1-2|MAP7D3	nc|ENSG00000129680|Q8IWC1-2|MAP7D3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3116455078125	2	561.311677	1120.6088	-0.12278	-6.8919E-05	0.13708	7.6943E-05	0.014295	8.0242E-06	561.3117500617833	13.513	0.38526	13.445	13.329	13.714	-0.067495					30	13	3	0	0	0	0.19522	1	447	447		31.636	12.379	1	283590			46520	3437	26749	26750	56685	56685					0.05332191809497999
SVQSDQGYISR	11	Unmodified	_SVQSDQGYISR_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3019409179688	2	620.301841	1238.58913	-0.01605	-9.9558E-06	0.01324	8.213E-06	-0.0028096	-1.7428E-06	620.3018577835295	28.323	0.57541	28.323	28.094	28.67	0					44	19	3	0	0	0	0.012274	1	4953	4953		64.86	36.366	1	350250			46521	7004	26750	26751	56686	56686					-0.020621842012587877
SVQSDQGYISR	11	Unmodified	_SVQSDQGYISR_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3015747070312	2	620.301841	1238.58913	-0.10167	-6.3068E-05	0.12126	7.5218E-05	0.019587	1.215E-05	620.3018098031308	28.332	0.57965	28.328	28.14	28.72	-0.0042572					49	20	4	0	0	0	2.9385E-06	2	4948	4948;5007		130.95	85.208	1	447520			46522	7004	26750	26751	56687;56688	56687					-0.020621842012587877
SVQSDQGYISR	11	Unmodified	_SVQSDQGYISR_					0	0	0		nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	nc|ENSG00000177663|Q96F46-2|IL17RA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3016357421875	2	620.301841	1238.58913	-0.12021	-7.4567E-05	0.17639	0.00010941	0.056175	3.4846E-05	620.3018302586183	28.298	0.52823	28.299	28.051	28.58	0.0004673					45	18	3	0	0	0	0.0016763	1	4940	4940		87.442	55.405	1	386560			46523	7004	26750	26751	56689	56689					-0.020621842012587877
SVQSHKDL	8	Unmodified	_SVQSHKDL_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.24053955078125	2	457.240524	912.466495	0.21444	9.8051E-05	-0.49596	-0.00022677	-0.28152	-0.00012872	457.2404019054591	23.666	0.79704	23.627	23.311	24.108	-0.038927					52	27	3	0	0	0	0.43302	1	3506	3506		11.64	11.64	1	107160			46524	802	26751	26752	56690	56690					0.0067602385800000775
SVQTSRLAK	9	Unmodified	_SVQTSRLAK_					0	0	0		ENSG00000182326|ENST00000360817|C1S;ENST00000443875.5_1_12:7174318-7177952:+|nuORF	ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7720642089844	2	495.290548	988.566543	0.1052	5.2105E-05	0.0070488	3.4912E-06	0.11225	5.5596E-05	495.29042044758404	14.516	0.25762	14.516	14.365	14.623	0					22	8	3	0	0	0	0.19888	1	750	750		32.037	11.623	1	262840			46525	7289	26752	26753	56691	56691					0.07180261191797399
SVQTSRLAK	9	Unmodified	_SVQTSRLAK_					0	0	0		ENSG00000182326|ENST00000360817|C1S;ENST00000443875.5_1_12:7174318-7177952:+|nuORF	ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7719421386719	2	495.290548	988.566543	0.041224	2.0418E-05	0.15961	7.9052E-05	0.20083	9.947E-05	495.2905145644142	14.648	0.29863	14.582	14.4	14.699	-0.066067					25	10	3	0	0	0	0.22695	1	788	788		24.882	3.3446	1	265380			46526	7289	26752	26753	56692	56692					0.07180261191797399
SVQVFGRKK	9	Unmodified	_SVQVFGRKK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENST00000469078.5_1_19:20235852-20236290:+|nuORF;ENSG00000105193|ENST00000251453|RPS16	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.8162841796875	2	524.816733	1047.61891	0.31099	0.00016321	-0.61812	-0.0003244	-0.30713	-0.00016119	524.8162189695496	15.883	0.35546	15.883	15.679	16.035	0					33	12	3	0	0	0	0.25123	1	1165	1165		12.241	1.4167	1	92369			46527	1953	26753	26754	56693	56693					0.09700844325402613
SVQVFGRKK	9	Unmodified	_SVQVFGRKK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENST00000469078.5_1_19:20235852-20236290:+|nuORF;ENSG00000105193|ENST00000251453|RPS16	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.816162109375	2	524.816733	1047.61891	0.26043	0.00013668	-0.63238	-0.00033188	-0.37195	-0.00019521	524.8161954055835	16	0.44777	15.886	15.692	16.139	-0.11434					31	14	3	0	0	0	0.21447	1	1199	1199		21.537	8.4945	1	87644			46528	1953	26753	26754	56694	56694					0.09700844325402613
SVQVFGRKK	9	Unmodified	_SVQVFGRKK_					0	0	0		ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENST00000469078.5_1_19:20235852-20236290:+|nuORF;ENSG00000105193|ENST00000251453|RPS16	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	ENST00000601390.1_1_19:39926180-39926535:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8160400390625	2	524.816733	1047.61891	0.33291	0.00017472	-0.56193	-0.00029491	-0.22902	-0.00012019	524.8163060794857	15.945	0.33632	15.883	15.73	16.066	-0.062533					24	11	3	0	0	0	0.12642	1	1175	1175		34.402	19.563	1	112860			46529	1953	26753	26754	56695	56695					0.09700844325402613
SVQVPEFTPK	10	Unmodified	_SVQVPEFTPK_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.808349609375	2	566.305864	1130.59717	0.12452	7.0517E-05	0.53412	0.00030248	0.65864	0.00037299	566.3061763364335	46.329	0.86156	46.389	45.971	46.832	0.059593					69	30	3	0	0	0	0.20619	1	10403	10403		51.488	18.043	1	1327000			46530	3533	26754	26755	56696	56696					0.037099947861634064
SVQVPRNLVGK	11	Unmodified	_SVQVPRNLVGK_					0	0	0		ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.8583374023438	2	598.859129	1195.70371	-0.99693	-0.00059702	0.042024	2.5167E-05	-0.95491	-0.00057185	598.85907720827	34.792	0.58814	34.792	34.556	35.144	0					44	20	3	0	0	0	0.29388	1	6955	6955		22.775	1.238	1	430660			46531	3417	26755	26756	56697	56697					0.11368170071364148
SVQVPRNLVGK	11	Unmodified	_SVQVPRNLVGK_					0	0	0		ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.8585205078125	2	598.859129	1195.70371	-0.38481	-0.00023044	-0.35084	-0.0002101	-0.73564	-0.00044055	598.8587781288865	34.722	0.64381	34.8	34.444	35.088	0.077377					51	22	3	0	0	0	0.091141	1	6893	6893		41.347	13.718	1	460250			46532	3417	26755	26756	56698	56698					0.11368170071364148
SVQVPRNLVGK	11	Unmodified	_SVQVPRNLVGK_					0	0	0		ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	ENSG00000129245|ENST00000250113|FXR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	598.859129	1195.70371	-1.1325	-0.00067823	0.16443	9.847E-05	-0.96811	-0.00057976	598.8591945157285	34.703	0.60078	34.778	34.496	35.097	0.075306	-0.012021	0.00027937	NaN	41.347	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347590			46533	3417	26755	26756							0.11368170071364148
SVRASEPKR	9	Unmodified	_SVRASEPKR_					0	0	0			REV__ENST00000409843.5_1_2:189156545-189156761:+|nuORF	REV__ENST00000409843.5_1_2:189156545-189156761:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7621459960938	2	515.293622	1028.57269	0.25097	0.00012932	-1.2194	-0.00062835	-0.96844	-0.00049903	515.2932140054692	27.071	0.40053	27.071	26.953	27.354	0					16	13	2	0	0	0	0.25527	1	4561	4561		8.7454	1.4562	1	59480	+		46534	20767	26756	26757	56699	56699					0.05954779423313994
SVRFVKGQE	9	Unmodified	_SVRFVKGQE_					0	0	0			REV__ENST00000599581.5_1_19:52786637-52794448:+|nuORF	REV__ENST00000599581.5_1_19:52786637-52794448:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8062133789062	2	525.290548	1048.56654	0.17493	9.1887E-05	-0.41404	-0.00021749	-0.23911	-0.0001256	525.2906437091916	13.215	0.7091	13.215	13.058	13.767	0					76	24	5	0	0	0	0.23767	1	452	452		18.146	1.9972	1	3909300	+		46535	18630	26757	26758	56700	56700					0.04420261191808095
SVRFVKGQE	9	Unmodified	_SVRFVKGQE_					0	0	0			REV__ENST00000599581.5_1_19:52786637-52794448:+|nuORF	REV__ENST00000599581.5_1_19:52786637-52794448:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8063354492188	2	525.290548	1048.56654	0.12567	6.6011E-05	-0.22032	-0.00011573	-0.094657	-4.9723E-05	525.2907532475605	13.278	0.70149	13.178	13.042	13.743	-0.09929					81	24	5	0	0	0	0.22188	1	470	470		20.454	4.3045	1	4432800	+		46536	18630	26757	26758	56701	56701					0.04420261191808095
SVRGAGAPK	9	Unmodified	_SVRGAGAPK_					0	0	0			REV__ENST00000540866.2_1_12:123459879-123461705:+|nuORF	REV__ENST00000540866.2_1_12:123459879-123461705:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5700988769531	2	421.745776	841.477	0.075076	3.1663E-05	1.5203	0.00064117	1.5953	0.00067283	421.7459222842887	29.953	0.3661	29.953	29.801	30.167	0					30	12	3	0	0	0	0.25622	1	5438	5438		7.2892	1.5288	1	65013	+		46537	20851	26758	26759	56702	56702					0.04992051303088374
SVRGPRVV	8	Unmodified	_SVRGPRVV_					0	0	0			REV__ENST00000564098.5_1_16:1796593-1797040:+|nuORF	REV__ENST00000564098.5_1_16:1796593-1797040:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.26904296875	2	435.269419	868.524284	-0.13739	-5.9801E-05	-0.26468	-0.00011521	-0.40206	-0.00017501	435.2692818629393	16.771	1.2282	16.771	16.491	17.719	0					109	42	4	0	0	0	0.39956	1	1399	1399		19.439	1.2926	1	2682900	+		46538	22337	26759	26760	56703	56703					0.08476330574092117
SVRHSAFRASF	11	Unmodified	_SVRHSAFRASF_					0	0	0		nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.22357177734375	3	422.223028	1263.64725	0.29081	0.00012279	0.037107	1.5668E-05	0.32792	0.00013845	422.2230466124494	32.322	0.87584	32.377	32.097	32.973	0.055309					91	31	4	0	0	0	0.33025	1	6219	6219		6.2344	0.83165	1	1696400			46539	12660	26760	26761	56704	56704					0.025975422346846244
SVRLLQKF	8	Unmodified	_SVRLLQKF_					0	0	0			REV__ENST00000333010.6_1_5:147040929-147162182:-|nuORF	REV__ENST00000333010.6_1_5:147040929-147162182:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.26788330078125	2	495.808377	989.6022	-0.52498	-0.00026029	0.024056	1.1927E-05	-0.50092	-0.00024836	495.8082594598976	35.165	0.38371	35.165	34.971	35.354	0					20	13	2	0	0	0	0.34167	1	7048	7048		11.64	0.81637	1	82153	+		46540	20051	26761	26762	56705	56705					0.10698343439469227
SVRLSCTSHFF	11	Unmodified	_SVRLSCTSHFF_					0	0	0			REV__Tigger1_dup9926|chr14:33917986-33920131:+|2.144223155159988|0.1272725466014813|4.07|536.0|1|1|sense	REV__Tigger1_dup9926|chr14:33917986-33920131:+|2.144223155159988|0.1272725466014813|4.07|536.0|1|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.929931640625	3	428.54489	1282.61284	-0.0221	-9.471E-06	-0.67318	-0.00028849	-0.69528	-0.00029796	428.54463504392425	32.542	0.57293	32.596	32.277	32.85	0.054371					33	20	2	0	0	0	0.33296	1	6183	6183		1.2148	0	1	172110	+		46541	23334	26762	26763	56706	56706					-0.017160419684159933
SVRLVRDKDTD	11	Unmodified	_SVRLVRDKDTD_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H;ENST00000479338.5_1_7:73588713-73604094:+|nuORF;ENST00000489484.5_1_7:73588713-73604262:+|nuORF	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.26904296875	3	435.237002	1302.68918	-0.16352	-7.1168E-05	2.6724	0.0011631	2.5089	0.001092	435.23821514945195	16.681	0.17202	16.681	16.548	16.72	0					6	5	2	0	0	0	0.33122	1	1399	1399		7.0371	0	1	25537			46542	2094	26763	26764	56707	56707					0.04994053132577392
SVRLVSRW	8	Unmodified	_SVRLVSRW_					0	0	0			REV__nc|ENSG00000148290|Q15526-2|SURF1	REV__nc|ENSG00000148290|Q15526-2|SURF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.8212585449219	2	501.795801	1001.57705	0.43075	0.00021615	-0.32788	-0.00016453	0.10287	5.1622E-05	501.79568827380103	36.961	0.65002	37.048	36.762	37.412	0.087406					42	23	3	0	0	0	0.33293	1	7538	7538		20.454	2.3186	1	279510	+		46543	16418	26764	26765	56708	56708					0.07632288636898465
SVRPFMMMYGR	11	Unmodified	_SVRPFMMMYGR_					0	0	0			REV__ENSG00000133124|ENST00000372129|IRS4	REV__ENSG00000133124|ENST00000372129|IRS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.77667236328125	3	458.887494	1373.64065	0.15997	7.3408E-05	1.1639	0.00053411	1.3239	0.00060752	458.8880623490389	28.988	0.29832	28.988	28.791	29.089	0					19	10	2	0	0	0	0.33296	1	5090	5090		2.6312	0.19645	1	114410	+		46544	15610	26765	26766	56709	56709					-0.031221783041928575
SVRPFMMMYGR	11	Unmodified	_SVRPFMMMYGR_					0	0	0			REV__ENSG00000133124|ENST00000372129|IRS4	REV__ENSG00000133124|ENST00000372129|IRS4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	458.887494	1373.64065	0.021288	9.769E-06	1.4689	0.00067408	1.4902	0.00068385	458.8882294276339	28.952	0.31287	28.966	28.853	29.166	0.013475	-0.011101	0.00016251	NaN	2.6312	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123740	+		46545	15610	26765	26766							-0.031221783041928575
SVRRGPPVA	9	Unmodified	_SVRRGPPVA_					0	0	0		ENST00000517547.5_1_5:160838012-160973588:-|nuORF	ENST00000517547.5_1_5:160838012-160973588:-|nuORF	ENST00000517547.5_1_5:160838012-160973588:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2426452636719	2	469.780151	937.545748	0.12779	6.0033E-05	0.5349	0.00025128	0.66269	0.00031132	469.7803310243496	28.999	0.52954	29.011	28.831	29.361	0.012266					39	18	3	0	0	0	0.25417	1	5189	5189		8.5933	0	1	281230			46546	11437	26766	26767	56710	56710					0.0744771560279105
SVRRLMIS	8	Unmodified	_SVRRLMIS_					0	0	0		ENST00000477780.2_1_1:154246158-154247548:+|nuORF	ENST00000477780.2_1_1:154246158-154247548:+|nuORF	ENST00000477780.2_1_1:154246158-154247548:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7866516113281	2	481.284211	960.55387	0.013844	6.6628E-06	-1.8121	-0.00087216	-1.7983	-0.00086549	481.28252843311924	28.573	0.70647	28.574	28.188	28.894	0.0004673					71	24	4	0	0	0	0.4397	1	5052	5052		9.3474	0	1	553700			46547	10961	26767	26768	56711	56711					0.07201526527899205
SVRRNRAPF	9	Unmodified	_SVRRNRAPF_					0	0	0			REV__ENST00000409993.6_1_11:118972937-118977927:-|nuORF	REV__ENST00000409993.6_1_11:118972937-118977927:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8062133789062	2	551.815056	1101.61556	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.804	1	64.794	64.294	65.294	-0.0095291								0	0	0	0.21357	1	16118	16118		18.135	0	1		+		46548	20770	26768	26769	56712	56712					0.06881594271385438
SVRRSYSL	8	Unmodified	_SVRRSYSL_					0	0	0		ENSG00000138136|ENST00000370193|LBX1	ENSG00000138136|ENST00000370193|LBX1	ENSG00000138136|ENST00000370193|LBX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2417297363281	2	484.269616	966.524678	0.23449	0.00011355	-2.0587	-0.00099696	-1.8242	-0.00088341	484.26766073418094	24.588	0.61713	24.516	24.085	24.702	-0.072559					27	20	3	0	0	0	0.34167	1	3793	3793		11.64	3.047	1	69483			46549	4121	26769	26770	56713	56713					0.04007705503283887
SVRSADVSL	9	Unmodified	_SVRSADVSL_					0	0	0			REV__ENST00000598969.5_1_19:19016674-19016770:-|nuORF	REV__ENST00000598969.5_1_19:19016674-19016770:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2533874511719	2	467.253631	932.49271	-0.12073	-5.641E-05	-0.10455	-4.8853E-05	-0.22528	-0.00010526	467.2534994186217	26.104	0.87688	26.066	25.843	26.72	-0.038671					76	30	4	0	0	0	0.057976	1	4287	4287		49.933	2.3386	1	950140	+		46550	22623	26770	26771	56714	56714					0.023762930294765283
SVRSVLKSL	9	Unmodified	_SVRSVLKSL_					0	0	0			REV__ENSG00000204764|ENST00000523189|RANBP17	REV__ENSG00000204764|ENST00000523189|RANBP17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2554931640625	2	494.811116	987.60768	0.41315	0.00020443	-1.4882	-0.00073637	-1.075	-0.00053194	494.81038329303965	33.454	0.44073	33.454	33.233	33.674	0					21	15	2	0	0	0	0.24787	1	6459	6459		10.8	0	1	84355	+		46551	18963	26771	26772	56715	56715					0.11338022231268496
SVRTLTQIQEI	11	Unmodified	_SVRTLTQIQEI_					0	0	0		ENSG00000101353|ENST00000343811|MROH8;nc|ENSG00000101353|Q9H579|MROH8;nc|ENSG00000101353|Q9H579-2|MROH8	ENSG00000101353|ENST00000343811|MROH8	ENSG00000101353|ENST00000343811|MROH8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.8992614746094	3	429.913748	1286.71942	-0.20262	-8.7107E-05	-1.111	-0.00047762	-1.3136	-0.00056473	429.91319641840425	35.489	0.49852	35.489	35.302	35.8	0					27	17	2	0	0	0	0.41892	1	7182	7182		8.7518	0.90574	1	401870			46552	1691	26772	26773	56716	56716					0.08752411797740933
SVRTPNFLS	9	Unmodified	_SVRTPNFLS_					0	0	0		ENST00000474184.1_1_2:136736721-136740991:-|nuORF	ENST00000474184.1_1_2:136736721-136740991:-|nuORF	ENST00000474184.1_1_2:136736721-136740991:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8007507324219	2	510.777274	1019.53999	0.30199	0.00015425	-0.12605	-6.4385E-05	0.17594	8.9867E-05	510.7769556048856	38.148	0.61735	38.148	37.871	38.488	0					37	21	2	0	0	0	0.24848	1	8021	8021		13.906	0	1	238620			46553	10917	26773	26774	56717	56717					0.031005723004682295
SVRVPSTVT	9	Unmodified	_SVRVPSTVT_					0	0	0			REV__ENST00000487187.1_1_7:1476413-1478653:-|nuORF	REV__ENST00000487187.1_1_7:1476413-1478653:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.27215576171875	2	473.271824	944.529095	0.33301	0.0001576	0.15693	7.4272E-05	0.48994	0.00023188	473.2718371664893	33.673	0.48416	33.673	33.456	33.94	0					36	17	3	0	0	0	0.088443	1	6584	6584		39.95	1.7741	1	354830	+		46554	21560	26774	26775	56718	56718					0.05461169926195453
SVRVTVINPHQ	11	Unmodified	_SVRVTVINPHQ_					0	0	0			REV__ENST00000492390.5_1_1:1636243-1639660:-|nuORF	REV__ENST00000492390.5_1_1:1636243-1639660:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.7952270507812	2	625.354211	1248.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.39	1	105.39	104.89	105.89	0								0	0	0	0.37382	1	27915	27915		2.9952	0.26005	1		+		46555	21400	26775	26776	56719	56719					0.07946982065982411
SVSASFIII	9	Unmodified	_SVSASFIII_					0	0	0			REV__ENST00000412485.1_1_X:13284980-13285373:-|nuORF	REV__ENST00000412485.1_1_X:13284980-13285373:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.2998046875	2	468.773668	935.532783	0.28985	0.00013587	1.5967	0.0007485	1.8866	0.00088437	468.77368080629265	84.267	0.18986	84.267	84.186	84.376	0					10	7	2	0	0	0	0.23783	1	22095	22095		18.135	0	1	124150	+		46556	20782	26776	26777	56720	56720					0.06243839700061926
SVSASRVVK	9	Unmodified	_SVSASRVVK_					0	0	0		ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	ENSG00000107554|ENST00000324109|DNMBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7796936035156	2	466.779816	931.545079	-0.33187	-0.00015491	0.46137	0.00021536	0.1295	6.0447E-05	466.7799782700938	13.855	0.39326	13.751	13.568	13.961	-0.10466					37	13	4	0	0	0	0.10059	1	553	553		38.176	1.6694	1	552960			46557	2132	26777	26778	56721	56721					0.07656876163105153
SVSAVNLPK	9	Unmodified	_SVSAVNLPK_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7690124511719	2	457.768917	913.523281	0.024424	1.1181E-05	0.25743	0.00011784	0.28185	0.00012902	457.7689930243379	34.2	1.0516	34.2	33.865	34.917	0					73	37	3	0	0	0	0.014206	1	6738	6738		72.968	23.035	1	775860			46558	2759	26778	26779	56722	56722					0.06306071414519465
SVSAVNLPK	9	Unmodified	_SVSAVNLPK_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7689514160156	2	457.768917	913.523281	0.15417	7.0575E-05	0.08154	3.7327E-05	0.23571	0.0001079	457.7688623285644	34.089	0.9946	34.155	33.76	34.754	0.06636					74	35	3	0	0	0	0.014206	1	6695	6695		72.968	23.035	1	867250			46559	2759	26778	26779	56723	56723					0.06306071414519465
SVSAVNLPK	9	Unmodified	_SVSAVNLPK_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.76898193359375	2	457.768917	913.523281	0.0014221	6.5099E-07	0.17009	7.7862E-05	0.17151	7.8513E-05	457.7689937107591	34.072	1.027	34.139	33.77	34.797	0.066704					72	36	3	0	0	0	0.014206	1	6684	6684		72.968	31.128	1	906090			46560	2759	26778	26779	56724	56724					0.06306071414519465
SVSDIIRLR	9	Unmodified	_SVSDIIRLR_					0	0	0		ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3;nc|ENSG00000101109|Q13043-2|STK4;ENSG00000101109|ENST00000372806|STK4	ENSG00000104375|ENST00000419617|STK3	ENSG00000104375|ENST00000419617|STK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.8196411132812	2	529.819473	1057.62439	0.66249	0.000351	-0.12407	-6.5737E-05	0.53842	0.00028526	529.8194341363593	45.316	0.59223	45.376	45.142	45.734	0.059834					38	20	3	0	0	0	0.11234	1	10130	10130		51.63	25.362	1	459660			46561	1886	26779	26780	56725	56725					0.09788523117231307
SVSDIIRLR	9	Unmodified	_SVSDIIRLR_					0	0	0		ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3;nc|ENSG00000101109|Q13043-2|STK4;ENSG00000101109|ENST00000372806|STK4	ENSG00000104375|ENST00000419617|STK3	ENSG00000104375|ENST00000419617|STK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	529.819473	1057.62439	0.75872	0.00040199	-0.064492	-3.4169E-05	0.69423	0.00036782	529.8192916044104	45.48	0.56926	45.48	45.291	45.86	0	0.059391	0.00012464	NaN	63.961	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345810			46562	1886	26779	26780							0.09788523117231307
SVSDIIRLR	9	Unmodified	_SVSDIIRLR_					0	0	0		ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3;nc|ENSG00000101109|Q13043-2|STK4;ENSG00000101109|ENST00000372806|STK4	ENSG00000104375|ENST00000419617|STK3	ENSG00000104375|ENST00000419617|STK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	529.819473	1057.62439	0.59032	0.00031276	-0.27061	-0.00014338	0.31971	0.00016939	529.8193921180793	45.342	0.52957	45.407	45.173	45.703	0.065048	-0.014195	-9.3777E-05	NaN	63.961	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	401640			46563	1886	26779	26780							0.09788523117231307
SVSDLAPPR	9	Unmodified	_SVSDLAPPR_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.256103515625	2	471.256174	940.497795	0.27575	0.00012995	0.041536	1.9574E-05	0.31729	0.00014952	471.2561045844664	32.137	1.224	32.137	31.867	33.091	0					87	43	3	0	0	0	0.0024096	5	6116	6066;6116;6149;6197;6249		106.94	68.966	1	1645900			46564	6059	26780	26781	56726;56727;56728;56729;56730	56727					0.025165968920987325
SVSDLAPPR	9	Unmodified	_SVSDLAPPR_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2562561035156	2	471.256174	940.497795	0.43082	0.00020303	-0.093381	-4.4007E-05	0.33744	0.00015902	471.25603089055136	32.073	1.0532	32.115	31.852	32.906	0.042366					78	37	3	0	0	0	0.0037449	5	6092	6049;6092;6126;6176;6226		96.367	65.73	1	1978900			46565	6059	26780	26781	56731;56732;56733;56734;56735	56732					0.025165968920987325
SVSDLAPPR	9	Unmodified	_SVSDLAPPR_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2561950683594	2	471.256174	940.497795	0.25913	0.00012212	0.031919	1.5042E-05	0.29105	0.00013716	471.2560838695032	32.117	1.0347	32.158	31.802	32.836	0.040993					80	36	3	0	0	0	0.003317	5	6086	6033;6086;6128;6176;6225		99.755	61.781	1	1918700			46566	6059	26780	26781	56736;56737;56738;56739;56740	56737					0.025165968920987325
SVSDLFNTK	9	Unmodified	_SVSDLFNTK_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2|p.F1990Lfs*7|1|0.2|ENSG00000054654|chr14:64025137-64025137|T/-|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.761474609375	2	505.761289	1009.50803	0.52781	0.00026695	-0.10115	-5.116E-05	0.42666	0.00021579	505.7612438256876	44.92	1.2532	44.92	44.522	45.776	0					108	45	4	0	0	0	2.2231E-07	2	9991	9991;10031		171.46	111.39	1	10032000			46567	692	26781	26782	56741;56742	56741					0.0036515982667424396
SVSDLFNTK	9	Unmodified	_SVSDLFNTK_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2|p.F1990Lfs*7|1|0.2|ENSG00000054654|chr14:64025137-64025137|T/-|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7615051269531	2	505.761289	1009.50803	0.44153	0.00022331	-0.051316	-2.5954E-05	0.39021	0.00019735	505.761261195061	44.675	1.1058	44.743	44.408	45.514	0.068569					101	39	5	0	0	0	5.7869E-11	2	9914	9914;9961		184.36	115.25	1	10639000			46568	692	26781	26782	56743;56744	56743					0.0036515982667424396
SVSDLFNTK	9	Unmodified	_SVSDLFNTK_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2|p.F1990Lfs*7|1|0.2|ENSG00000054654|chr14:64025137-64025137|T/-|frameshift_variant;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.761474609375	2	505.761289	1009.50803	0.47421	0.00023984	-0.042588	-2.1539E-05	0.43163	0.0002183	505.76124227963277	44.646	1.1083	44.721	44.362	45.471	0.075047					112	40	5	0	0	0	5.7869E-11	3	9892	9846;9892;9934		184.36	121.78	1	9638100			46569	692	26781	26782	56745;56746;56747	56746					0.0036515982667424396
SVSDPVEDK	9	Unmodified	_SVSDPVEDK_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2353210449219	2	488.235104	974.455655	0.23822	0.00011631	0.084683	4.1345E-05	0.3229	0.00015765	488.2350874185332	21.911	0.75802	21.911	21.573	22.331	0					67	27	3	0	0	0	0.11201	2	2976	2976;3023		36.506	17.249	1	461210			46570	587	26782	26783	56748;56749	56748					-0.032594233069403344
SVSDPVEDK	9	Unmodified	_SVSDPVEDK_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.23529052734375	2	488.235104	974.455655	0.29357	0.00014333	0.23627	0.00011535	0.52983	0.00025868	488.23508899307797	22.028	0.86455	21.928	21.557	22.422	-0.10034					77	31	3	0	0	0	0.07944	1	3026	3026		41.956	22.699	1	492360			46571	587	26782	26783	56750	56750					-0.032594233069403344
SVSDPVEDK	9	Unmodified	_SVSDPVEDK_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2350769042969	2	488.235104	974.455655	0.19701	9.6187E-05	0.1299	6.342E-05	0.32691	0.00015961	488.2350627885312	21.955	0.80027	21.906	21.604	22.404	-0.049377					69	28	3	0	0	0	0.11201	2	3000	3000;3044		36.506	21.668	1	531760			46572	587	26782	26783	56751;56752	56751					-0.032594233069403344
SVSDQFYRY	9	Unmodified	_SVSDQFYRY_					0	0	0		ENST00000559249.5_1_14:103802197-103802459:+|nuORF;ENSG00000100664|ENST00000216554|EIF5	ENST00000559249.5_1_14:103802197-103802459:+|nuORF	ENST00000559249.5_1_14:103802197-103802459:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.305908203125	2	582.769645	1163.52474	0.62784	0.00036588	0.20577	0.00011992	0.83361	0.0004858	582.7695303347857	45.671	0.49411	45.671	45.366	45.86	0					36	17	3	0	0	0	0.075068	1	10189	10189		57.249	35.502	1	345510			46573	1622	26783	26784	56753	56753					-0.05048339287372983
SVSDQFYRY	9	Unmodified	_SVSDQFYRY_					0	0	0		ENST00000559249.5_1_14:103802197-103802459:+|nuORF;ENSG00000100664|ENST00000216554|EIF5	ENST00000559249.5_1_14:103802197-103802459:+|nuORF	ENST00000559249.5_1_14:103802197-103802459:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3059692382812	2	582.769645	1163.52474	0.42589	0.0002482	0.93818	0.00054675	1.3641	0.00079494	582.7697838646591	45.173	0.69387	45.248	44.911	45.605	0.075047					53	25	3	0	0	0	0.1335	1	10117	10117		47.594	25.848	1	484700			46574	1622	26783	26784	56754	56754					-0.05048339287372983
SVSDQFYRYK	10	Unmodified	_SVSDQFYRYK_					0	0	0		ENST00000559249.5_1_14:103802197-103802459:+|nuORF;ENSG00000100664|ENST00000216554|EIF5	ENST00000559249.5_1_14:103802197-103802459:+|nuORF	ENST00000559249.5_1_14:103802197-103802459:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.96063232421875	3	431.547177	1291.6197	0.11611	5.0109E-05	-1.3687	-0.00059068	-1.2526	-0.00054057	431.54716395636814	36.792	0.50143	36.792	36.562	37.063	0					50	17	4	0	0	0	0.31969	1	7518	7518		5.7834	3.6974	1	321450			46575	1622	26784	26785	56755	56755					-0.014444058162098372
SVSDQFYRYK	10	Unmodified	_SVSDQFYRYK_					0	0	0		ENST00000559249.5_1_14:103802197-103802459:+|nuORF;ENSG00000100664|ENST00000216554|EIF5	ENST00000559249.5_1_14:103802197-103802459:+|nuORF	ENST00000559249.5_1_14:103802197-103802459:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.9606018066406	3	431.547177	1291.6197	0.081891	3.534E-05	-0.47108	-0.00020329	-0.38919	-0.00016796	431.54718375902485	36.652	0.54605	36.739	36.516	37.062	0.08741					48	19	4	0	0	0	0.31969	1	7473	7473		5.7834	3.3486	1	425770			46576	1622	26784	26785	56756	56756					-0.014444058162098372
SVSDQHKL	8	Unmodified	_SVSDQHKL_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2403564453125	2	457.240524	912.466495	0.029673	1.3568E-05	-0.069092	-3.1592E-05	-0.039419	-1.8024E-05	457.2404373636341	23.625	0.76668	23.553	23.257	24.024	-0.072559					42	26	3	0	0	0	0.41097	1	3502	3502		18.135	1.1927	1	134830	+		46577	19084	26785	26786	56757	56757					0.0067602385800000775
SVSDYSLGW	9	Unmodified	_SVSDYSLGW_					0	0	0		ENST00000453604.6_1_19:11513241-11517469:-|nuORF	ENST00000453604.6_1_19:11513241-11517469:-|nuORF	ENST00000453604.6_1_19:11513241-11517469:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.7734375	2	507.232364	1012.45018	0.33555	0.0001702	3.1218	0.0015835	3.4574	0.0017537	507.2339067277611	23.964	0.54122	23.925	23.681	24.222	-0.038927					30	18	2	0	0	0	0.25706	1	3573	3573		6.7232	0.51738	1	55872			46578	10672	26786	26787	56758	56758					-0.055551020987536504
SVSELSIAEV	10	Unmodified	_SVSELSIAEV_					0	0	0			REV__nc|ENSG00000182923|Q96MT8-4|CEP63	REV__nc|ENSG00000182923|Q96MT8-4|CEP63	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.2567138671875	2	517.274229	1032.53391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.576	1	46.628	46.128	47.128	0.052574								0	0	0	0.33945	1	10505	10505		19.257	3.4098	1		+		46579	23127	26787	26788	56759	56759					0.018940092782941065
SVSERKEKYIM	11	Unmodified	_SVSERKEKYIM_					0	0	0			REV__ENSG00000120137|ENST00000239231|PANK3	REV__ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2431640625	3	457.242988	1368.70714	0.22634	0.00010349	0.36491	0.00016685	0.59125	0.00027035	457.2431012848155	53.207	1.3879	53.197	52.761	54.149	-0.0096054					137	51	4	0	0	0	0.41892	1	12500	12500		8.7518	0.46535	1	2896400	+		46580	15077	26788	26789	56760	56760					0.03753052063075302
SVSHGAPLLK	10	Unmodified	_SVSHGAPLLK_					0	0	0			REV__ENSG00000182768|ENST00000379095|NGRN	REV__ENSG00000182768|ENST00000379095|NGRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.0464782714844	2	504.795466	1007.57638	-0.10563	-5.332E-05	0.043193	2.1804E-05	-0.062434	-3.1516E-05	504.7956045910419	27.831	0.39635	27.831	27.596	27.992	0.0004673					14	13	2	0	0	0	0.31691	1	4713	4713		9.3831	2.66	1	92403	+		46581	18215	26789	26790	56761	56761					0.07289449197173781
SVSHGAPLLK	10	Unmodified	_SVSHGAPLLK_					0	0	0			REV__ENSG00000182768|ENST00000379095|NGRN	REV__ENSG00000182768|ENST00000379095|NGRN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	504.795466	1007.57638	-0.048978	-2.4724E-05	-0.21604	-0.00010906	-0.26502	-0.00013378	504.79561070143734	27.781	0.39663	27.76	27.641	28.038	-0.021412	-0.035512	-0.00016966	NaN	9.3831	15	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72178	+		46582	18215	26789	26790							0.07289449197173781
SVSILALALP	10	Unmodified	_SVSILALALP_					0	0	0			REV__ENST00000496925.5_1_3:184023699-184025408:+|nuORF	REV__ENST00000496925.5_1_3:184023699-184025408:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.74310302734375	2	492.310418	982.606283	0.32351	0.00015927	0.18824	9.267E-05	0.51175	0.00025194	492.31044658355063	62.058	0.38034	62.058	61.86	62.24	0					17	13	2	0	0	0	0.30079	1	15332	15332		20.454	1.1966	1	95363	+		46583	17876	26790	26791	56762	56762					0.11428388142485346
SVSIPSITK	9	Unmodified	_SVSIPSITK_					0	0	0		nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2763671875	2	466.276575	930.538597	-0.070742	-3.2985E-05	-0.1313	-6.1223E-05	-0.20204	-9.4208E-05	466.2763971459104	42.733	1.1161	42.818	42.211	43.327	0.085197					96	40	3	0	0	0	0.048637	2	9344	9250;9344		53.404	5.6553	1	2001500			46584	4545	26791	26792	56763;56764	56764					0.07054938211706485
SVSKLSTPKER	11	Unmodified	_SVSKLSTPKER_					0	0	0		nc|ENSG00000126804|Q9Y2K1-2|ZBTB1;ENSG00000126804|ENST00000683701|ZBTB1	nc|ENSG00000126804|Q9Y2K1-2|ZBTB1	nc|ENSG00000126804|Q9Y2K1-2|ZBTB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2276611328125	3	411.238343	1230.6932	0.19995	8.2227E-05	-0.27746	-0.0001141	-0.077507	-3.1874E-05	411.23836797091127	23.952	0.88607	23.913	23.592	24.478	-0.038927					102	30	6	0	0	0	0.46002	1	3669	3669		3.3557	3.3557	1	472280			46585	3292	26792	26793	56765	56765					0.08708142626255722
SVSKRKEW	8	Unmodified	_SVSKRKEW_					0	0	0			REV__ENST00000281031.4_2_11:77790996-77791257:-|nuORF	REV__ENST00000281031.4_2_11:77790996-77791257:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7711181640625	2	510.285266	1018.55598	-0.15586	-7.9536E-05	2.9277	0.001494	2.7719	0.0014144	510.2869168341523	13.091	0.33759	13.024	12.878	13.215	-0.067495					24	11	3	0	0	0	0.34294	1	363	363		7.2892	1.0834	1	41180	+		46586	19708	26793	26794	56766	56766					0.04744278537373248
SVSKTTLKP	9	Unmodified	_SVSKTTLKP_					0	0	0		ENST00000538223.1_1_12:121766892-121775189:-|nuORF	ENST00000538223.1_1_12:121766892-121775189:-|nuORF	ENST00000538223.1_1_12:121766892-121775189:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.75048828125	2	480.78985	959.565146	-0.021742	-1.0454E-05	-0.99688	-0.00047929	-1.0186	-0.00048974	480.78921356463286	22.662	0.78258	22.662	22.39	23.173	0					62	26	3	0	0	0	0.23749	1	3239	3239		15.248	5.0979	1	255330			46587	11699	26794	26795	56767	56767					0.08374627103034982
SVSLDLPRLS	10	Unmodified	_SVSLDLPRLS_					0	0	0		nc|ENSG00000128052|P35968-2|KDR;KDR|p.L289*|1|0.38|ENSG00000128052|chr4:55113414-55113414|A/-|frameshift_variant;nc|ENSG00000128052|P35968-3|KDR;ENSG00000128052|ENST00000263923|KDR	nc|ENSG00000128052|P35968-2|KDR	nc|ENSG00000128052|P35968-2|KDR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.314697265625	2	543.811313	1085.60807	0.15286	8.3128E-05	2.1355	0.0011613	2.2883	0.0012444	544.3141836757698	12.277	0.70274	12.209	11.999	12.702	-0.06806					34	26	2	0	0	0	0.3641	1	73	73		10.074	3.3508	1	222020			46588	12693	26795	26796	56768	56768					0.06869397160448898
SVSLGAPLAV	10	Unmodified	_SVSLGAPLAV_					0	0	0			REV__ENST00000432176.6_1_7:23053661-23053742:-|nuORF	REV__ENST00000432176.6_1_7:23053661-23053742:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7933044433594	2	457.271293	912.528032	0.16417	7.5068E-05	1.4016	0.00064091	1.5658	0.00071598	457.271338470849	32.721	0.9967	32.777	32.45	33.447	0.055313					58	35	3	0	0	0	0.28434	1	6385	6385		19.257	7.0163	1	206020	+		46589	20957	26796	26797	56769	56769					0.06826955557278325
SVSLLKFLK	9	Unmodified	_SVSLLKFLK_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8342895507812	2	517.83406	1033.65357	0.69987	0.00036242	-0.16754	-8.6756E-05	0.53233	0.00027566	517.8340500997924	48.137	0.47829	48.185	47.994	48.472	0.04752					32	17	2	0	0	0	0.15219	1	11002	11002		30.637	5.2372	1	605880			46590	12678	26797	26798	56770	56770					0.1380866741351383
SVSLLKFLK	9	Unmodified	_SVSLLKFLK_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	517.83406	1033.65357	0.51885	0.00026868	0.002907	1.5053E-06	0.52175	0.00027018	517.8341698042974	48.057	0.47172	48.1	48.011	48.483	0.043324	-0.029778	-1.9778E-05	NaN	30.637	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	668520			46591	12678	26797	26798							0.1380866741351383
SVSLPSVKK	9	Unmodified	_SVSLPSVKK_					0	0	0		nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.792236328125	2	472.792392	943.570232	-0.16418	-7.7625E-05	0.17706	8.3715E-05	0.012881	6.09E-06	472.7923816328677	27.757	1.5682	27.757	26.673	28.241	0					131	54	3	0	0	0	0.0041491	4	4725	4676;4725;4769;4818		93.166	41.536	1	1260900			46592	568	26798	26799	56771;56772;56773;56774	56772					0.0961893096566655
SVSLPSVKK	9	Unmodified	_SVSLPSVKK_					0	0	0		nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7923583984375	2	472.792392	943.570232	-0.1034	-4.8886E-05	0.10112	4.7807E-05	-0.0022812	-1.0786E-06	472.7923671808384	27.73	1.6686	27.708	26.62	28.289	-0.021412					133	58	4	0	0	0	0.0046246	5	4717	4660;4668;4717;4766;4813		89.401	41.652	1	1461400			46593	568	26798	26799	56775;56776;56777;56778;56779	56777					0.0961893096566655
SVSLPSVKK	9	Unmodified	_SVSLPSVKK_					0	0	0		nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	nc|ENSG00000034677|Q9NV58-2|RNF19A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7922058105469	2	472.792392	943.570232	-0.10916	-5.161E-05	0.13907	6.5749E-05	0.029906	1.4139E-05	472.7923829002417	27.749	1.5469	27.738	26.822	28.368	-0.01156					135	54	4	0	0	0	0.0054984	4	4728	4666;4728;4775;4823		86.332	34.702	1	1506000			46594	568	26798	26799	56780;56781;56782;56783	56781					0.0961893096566655
SVSLRSLKSIE	11	Unmodified	_SVSLRSLKSIE_					0	0	0		ENSG00000183530|ENST00000327423|PRR14L;PRR14L|p.G1490Vfs*29|1|0.2|ENSG00000183530|chr22:31713375-31713375|A/-|frameshift_variant;nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L	ENSG00000183530|ENST00000327423|PRR14L	ENSG00000183530|ENST00000327423|PRR14L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9070129394531	3	406.906594	1217.69795	0.17259	7.0227E-05	0.8384	0.00034115	1.011	0.00041138	406.9067665667745	35.968	0.40034	36.055	35.844	36.244	0.08625					35	14	3	0	0	0	0.42246	1	7254	7254		8.2864	0.34103	1	487710			46595	7375	26799	26800	56784	56784					0.09781026769042
SVSNMVHTAK	10	Oxidation (M)	_SVSNM(Oxidation (M))VHTAK_		SVSNM(1)VHTAK		SVSNM(55)VHTAK	0	0	1		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.271484375	2	545.271498	1088.52844	0.13198	7.1967E-05	-0.41926	-0.00022861	-0.28727	-0.00015664	545.2713342747206	13.351	0.67529	13.351	13.227	13.902	0					52	23	4	0	0	0	0.067194	1	401	401		55.249	40.41	1	384490			46596	2681	26800	26801	56785	56785		333			-0.012279927851977845
SVSNMVHTAK	10	Oxidation (M)	_SVSNM(Oxidation (M))VHTAK_		SVSNM(1)VHTAK		SVSNM(50)VHTAK	0	0	1		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2715454101562	2	545.271498	1088.52844	0.24129	0.00013157	-0.092778	-5.0589E-05	0.14851	8.0981E-05	545.271315425787	13.387	0.57946	13.287	13.189	13.768	-0.099291					38	20	2	0	0	0	0.09057	2	426	426;479		50.13	31.757	1	391110			46597	2681	26800	26801	56786;56787	56786		333			-0.012279927851977845
SVSNMVHTAK	10	Oxidation (M)	_SVSNM(Oxidation (M))VHTAK_		SVSNM(1)VHTAK		SVSNM(46)VHTAK	0	0	1		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2715454101562	2	545.271498	1088.52844	0.21865	0.00011923	0.026957	1.4699E-05	0.24561	0.00013392	545.2714045556313	13.424	0.55716	13.356	13.189	13.746	-0.067495					47	19	3	0	0	0	0.10726	1	418	418		46.475	31.227	1	395120			46598	2681	26800	26801	56788	56788		333			-0.012279927851977845
SVSNVVITK	9	Unmodified	_SVSNVVITK_					0	0	0		nc|ENSG00000085832|P42566-2|EPS15;ENSG00000085832|ENST00000371733|EPS15	nc|ENSG00000085832|P42566-2|EPS15	nc|ENSG00000085832|P42566-2|EPS15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7821350097656	2	473.782025	945.549496	0.18152	8.5999E-05	0.14374	6.8102E-05	0.32526	0.0001541	473.78204654841284	28.88	1.5153	28.88	28.548	30.064	0					144	53	5	0	0	0	6.5673E-08	4	5098	5049;5098;5148;5196		177.58	94.148	1	3071500			46599	1266	26801	26802	56789;56790;56791;56792	56790					0.07454340585991304
SVSNVVITK	9	Unmodified	_SVSNVVITK_					0	0	0		nc|ENSG00000085832|P42566-2|EPS15;ENSG00000085832|ENST00000371733|EPS15	nc|ENSG00000085832|P42566-2|EPS15	nc|ENSG00000085832|P42566-2|EPS15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7821044921875	2	473.782025	945.549496	0.19127	9.0622E-05	0.12725	6.0287E-05	0.31852	0.00015091	473.7820334874727	28.832	1.557	28.828	28.57	30.127	-0.0042572					143	53	6	0	0	0	1.1783E-12	4	5084	5043;5084;5130;5231		202.97	102.88	1	3268100			46600	1266	26801	26802	56793;56794;56795;56796	56794					0.07454340585991304
SVSNVVITK	9	Unmodified	_SVSNVVITK_					0	0	0		nc|ENSG00000085832|P42566-2|EPS15;ENSG00000085832|ENST00000371733|EPS15	nc|ENSG00000085832|P42566-2|EPS15	nc|ENSG00000085832|P42566-2|EPS15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7821044921875	2	473.782025	945.549496	0.068333	3.2375E-05	0.23765	0.00011259	0.30598	0.00014497	473.78207824458707	28.823	1.5567	28.824	28.55	30.107	0.0004673					145	54	6	0	0	0	1.1783E-12	4	5086	5035;5086;5133;5181		202.97	99.55	1	3258100			46601	1266	26801	26802	56797;56798;56799;56800	56798					0.07454340585991304
SVSPFLLGR	9	Unmodified	_SVSPFLLGR_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.284912109375	2	488.284734	974.554916	0.48561	0.00023711	-0.33628	-0.0001642	0.14933	7.2914E-05	488.2846171310859	53.541	0.9598	53.541	53.228	54.188	0					90	35	3	0	0	0	0.03069	2	12745	12745;12766		60.074	23.947	1	1241600			46602	8103	26802	26803	56801;56802	56801					0.06662064168483539
SVSPFLLGR	9	Unmodified	_SVSPFLLGR_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2847900390625	2	488.284734	974.554916	0.21631	0.00010562	-0.043226	-2.1107E-05	0.17309	8.4515E-05	488.2847314857574	53.541	1.0446	53.597	53.221	54.265	0.056259					93	39	3	0	0	0	0.023967	2	12726	12726;12762		62.573	18.714	1	1438000			46603	8103	26802	26803	56803;56804	56803					0.06662064168483539
SVSPFLLGR	9	Unmodified	_SVSPFLLGR_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.28485107421875	2	488.284734	974.554916	0.42636	0.00020819	-0.066003	-3.2228E-05	0.36036	0.00017596	488.2847168677615	53.719	1.1797	53.71	53.278	54.458	-0.0096092					91	43	3	0	0	0	0.047483	2	12766	12766;12821		53.833	17.706	1	1373500			46604	8103	26802	26803	56805;56806	56805					0.06662064168483539
SVSPLDRSII	10	Unmodified	_SVSPLDRSII_					0	0	0			REV__ENSG00000254206|ENST00000698511|NPIPB11	REV__ENSG00000254206|ENST00000698511|NPIPB11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.3142700195312	2	543.811313	1085.60807	0.11509	6.2588E-05	2.3999	0.0013051	2.515	0.0013677	544.3144027597813	12.285	0.52524	12.285	12.087	12.612	0					26	19	2	0	0	0	0.36786	1	74	74		9.3831	0	1	237760	+		46605	19233	26803	26804	56807	56807					0.06869397160471635
SVSPQEGHSF	10	Unmodified	_SVSPQEGHSF_					0	0	0			REV__nc|ENSG00000158158|Q6P4Q7-2|CNNM4	REV__nc|ENSG00000158158|Q6P4Q7-2|CNNM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2819213867188	2	537.74617	1073.47779	0.4489	0.0002414	-0.18876	-0.00010151	0.26014	0.00013989	537.7461036859474	33.279	0.54983	33.334	33.063	33.613	0.055309					28	19	2	0	0	0	0.31323	1	6406	6406		15.248	0.8431	1	257210	+		46606	23044	26804	26805	56808	56808					-0.05601198838508026
SVSPRWASRRR	11	Unmodified	_SVSPRWASRRR_					0	0	0			REV__ENST00000531243.2_1_1:40041726-40042359:-|nuORF	REV__ENST00000531243.2_1_1:40041726-40042359:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7480163574219	3	453.256843	1356.7487	-0.034263	-1.553E-05	-0.69678	-0.00031582	-0.73105	-0.00033135	453.2564812320164	15.871	0.59499	15.871	15.557	16.152	0					38	20	3	0	0	0	0.33303	1	1130	1130		2.4348	0.18206	1	57201	+		46607	21115	26805	26806	56809	56809					0.08459413657237747
SVSPRWASRRR	11	Unmodified	_SVSPRWASRRR_					0	0	0			REV__ENST00000531243.2_1_1:40041726-40042359:-|nuORF	REV__ENST00000531243.2_1_1:40041726-40042359:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.748046875	3	453.256843	1356.7487	-0.031226	-1.4153E-05	-0.031363	-1.4216E-05	-0.062589	-2.8369E-05	453.2568132955912	16.057	0.61367	15.943	15.605	16.219	-0.11434					31	20	2	0	0	0	0.33303	1	1164	1164		2.4348	0.97967	1	37743	+		46608	21115	26805	26806	56810	56810					0.08459413657237747
SVSPRWASRRR	11	Unmodified	_SVSPRWASRRR_					0	0	0			REV__ENST00000531243.2_1_1:40041726-40042359:-|nuORF	REV__ENST00000531243.2_1_1:40041726-40042359:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.7480773925781	3	453.256843	1356.7487	0.021968	9.9569E-06	-0.32106	-0.00014552	-0.2991	-0.00013557	453.25668119264225	15.977	0.47892	15.915	15.756	16.235	-0.062534					27	16	2	0	0	0	0.33236	1	1163	1163		4.4062	0.81348	1	55620	+		46609	21115	26805	26806	56811	56811					0.08459413657237747
SVSPVKATQK	10	Unmodified	_SVSPVKATQK_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3;chr12:100626864-100627489|516|10.23|0.52|4.29|+|ENST00000552854|GAS2L3,GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8015747070312	2	522.806031	1043.59751	0.16098	8.4162E-05	-2.0759	-0.0010853	-1.915	-0.0010012	522.805114414223	14.377	0.64223	14.377	14.307	14.949	0					37	22	2	0	0	0	0.16374	1	701	701		37.075	16.66	1	245640			46610	4231	26806	26807	56812	56812					0.07745414506030102
SVSPVKATQK	10	Unmodified	_SVSPVKATQK_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3;chr12:100626864-100627489|516|10.23|0.52|4.29|+|ENST00000552854|GAS2L3,GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.800537109375	2	522.806031	1043.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.449	1	14.344	13.844	14.844	-0.10466								0	0	0	0.16693	1	731	731		43.982	11.196	1				46611	4231	26806	26807	56813	56813					0.07745414506030102
SVSPVKATQK	10	Unmodified	_SVSPVKATQK_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3;chr12:100626864-100627489|516|10.23|0.52|4.29|+|ENST00000552854|GAS2L3,GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8058471679688	2	522.806031	1043.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.472	1	14.368	13.868	14.868	-0.10466								0	0	0	0.1938	1	738	738		40.725	14.457	1				46612	4231	26806	26807	56814	56814					0.07745414506030102
SVSPVKATQK	10	Unmodified	_SVSPVKATQK_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3;chr12:100626864-100627489|516|10.23|0.52|4.29|+|ENST00000552854|GAS2L3,GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8058471679688	2	522.806031	1043.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.466	1	14.4	13.9	14.9	-0.066068								0	0	0	0.1938	1	733	733		40.725	14.457	1				46613	4231	26806	26807	56815	56815					0.07745414506030102
SVSPVVHVR	9	Unmodified	_SVSPVVHVR_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.287841796875	2	490.287808	978.561064	0.29462	0.00014445	0.14473	7.0959E-05	0.43935	0.00021541	490.2876562841319	24.668	0.9262	24.668	24.34	25.267	0					81	31	4	0	0	0	0.016723	3	3837	3784;3837;3891		69.105	36.799	1	797760			46614	4555	26807	26808	56816;56817;56818	56817					0.07092582399991443
SVSPVVHVR	9	Unmodified	_SVSPVVHVR_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.28778076171875	2	490.287808	978.561064	0.27647	0.00013555	-0.31602	-0.00015494	-0.03955	-1.9391E-05	490.2876403440754	24.736	1.0506	24.68	24.315	25.365	-0.055931					66	36	3	0	0	0	0.0059482	3	3854	3803;3854;3907		85.642	53.336	1	937820			46615	4555	26807	26808	56819;56820;56821	56820					0.07092582399991443
SVSPVVHVR	9	Unmodified	_SVSPVVHVR_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2877197265625	2	490.287808	978.561064	0.076632	3.7572E-05	0.054665	2.6802E-05	0.1313	6.4373E-05	490.2876952005188	24.712	1.0926	24.68	24.314	25.406	-0.031408					82	37	4	0	0	0	0.0059482	3	3845	3797;3845;3897		85.642	53.336	1	880560			46616	4555	26807	26808	56822;56823;56824	56823					0.07092582399991443
SVSQPIMVQR	10	Oxidation (M)	_SVSQPIM(Oxidation (M))VQR_		SVSQPIM(1)VQR		SVSQPIM(160)VQR	0	0	1		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.808349609375	2	580.808248	1159.60194	0.13378	7.7701E-05	0.15378	8.9315E-05	0.28756	0.00016702	580.8083184259281	31.145	0.80045	31.145	30.753	31.553	0					91	28	4	0	0	0	1.716E-08	4	5759	5708;5759;5811;5859		159.1	105.27	1	1745400			46617	3799	26808	26809	56825;56826;56827;56828	56826		476			0.028525556572731148
SVSQPIMVQR	10	Oxidation (M)	_SVSQPIM(Oxidation (M))VQR_		SVSQPIM(1)VQR		SVSQPIM(150)VQR	0	0	1		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8084106445312	2	580.808248	1159.60194	0.080901	4.6988E-05	0.20767	0.00012062	0.28858	0.00016761	580.8083631551258	31.112	0.81051	31.14	30.749	31.559	0.027948					92	28	4	0	0	0	1.5574E-05	4	5789	5703;5749;5789;5834		147.24	99.492	1	1834300			46618	3799	26808	26809	56829;56830;56831;56832	56831		476			0.028525556572731148
SVSQPIMVQR	10	Oxidation (M)	_SVSQPIM(Oxidation (M))VQR_		SVSQPIM(1)VQR		SVSQPIM(140)VQR	0	0	1		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8084106445312	2	580.808248	1159.60194	0.20858	0.00012115	-0.0027415	-1.5923E-06	0.20584	0.00011955	580.8082806315127	31.099	0.78773	31.14	30.747	31.535	0.040991					92	28	4	0	0	0	3.3863E-05	4	5735	5690;5735;5784;5833		135.86	84.234	1	1783300			46619	3799	26808	26809	56833;56834;56835;56836	56834		476			0.028525556572731148
SVSQQILLF	9	Unmodified	_SVSQQILLF_					0	0	0		ENST00000367922.7_1_1:162602283-162602376:+|nuORF	ENST00000367922.7_1_1:162602283-162602376:+|nuORF	ENST00000367922.7_1_1:162602283-162602376:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7978515625	2	517.797675	1033.5808	0.63116	0.00032682	-0.62203	-0.00032209	0.0091295	4.7272E-06	517.7973733588207	48.077	0.42738	48.077	47.959	48.386	0					21	14	2	0	0	0	0.27532	1	11013	11013		12.532	1.0368	1	724190			46620	9748	26809	26810	56837	56837					0.06534913620089355
SVSRSPVPEK	10	Unmodified	_SVSRSPVPEK_					0	0	0		ENST00000554465.5_1_14:70237039-70238175:+|nuORF;nc|ENSG00000100650|Q13243-3|SRSF5;ENSG00000100650|ENST00000557154|SRSF5;ENST00000554929.1_1_14:70237619-70238175:+|nuORF	ENST00000554465.5_1_14:70237039-70238175:+|nuORF;ENST00000554929.1_1_14:70237619-70238175:+|nuORF	ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3016357421875	2	543.301113	1084.58767	0.35642	0.00019364	-0.12055	-6.5495E-05	0.23587	0.00012815	543.3011715990201	16.42	0.44492	16.42	16.214	16.659	0					36	15	4	0	0	0	0.38027	1	1318	1318		7.1017	1.3699	1	94423			46621	11833;11839	26810	26811	56838	56838					0.04876226500641678
SVSRVWGRP	9	Unmodified	_SVSRVWGRP_					0	0	0		ENST00000511352.1_1_4:2749267-2757702:-|nuORF	ENST00000511352.1_1_4:2749267-2757702:-|nuORF	ENST00000511352.1_1_4:2749267-2757702:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8065185546875	2	522.290882	1042.56721	0.15622	8.1594E-05	0.42102	0.0002199	0.57725	0.00030149	522.2913098543281	14.563	0.62094	14.563	14.279	14.9	0					62	21	4	0	0	0	0.30623	1	711	711		7.9102	7.9102	1	254500			46622	11384	26811	26812	56839	56839					0.04763100631521411
SVSSDRIQK	9	Unmodified	_SVSSDRIQK_					0	0	0		ENSG00000146278|ENST00000336032|PNRC1;nc|ENSG00000146278|Q12796-2|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2777099609375	2	510.277638	1018.54072	-0.0028916	-1.4755E-06	-0.14542	-7.4204E-05	-0.14831	-7.568E-05	510.27771322046345	13.858	0.85624	13.858	13.567	14.423	0					88	29	5	0	0	0	2.973E-07	3	569	569;618;670		168.54	54.336	1	2197800			46623	4704	26812	26813	56840;56841;56842	56840					0.032193669495200083
SVSSDRIQK	9	Unmodified	_SVSSDRIQK_					0	0	0		ENSG00000146278|ENST00000336032|PNRC1;nc|ENSG00000146278|Q12796-2|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2777099609375	2	510.277638	1018.54072	-0.093937	-4.7934E-05	-0.060076	-3.0655E-05	-0.15401	-7.859E-05	510.2777304547619	13.962	0.91582	13.858	13.538	14.454	-0.10466					95	31	5	0	0	0	4.1496E-11	3	603	603;650;722		189.73	47.652	1	2302400			46624	4704	26812	26813	56843;56844;56845	56843					0.032193669495200083
SVSSDRIQK	9	Unmodified	_SVSSDRIQK_					0	0	0		ENSG00000146278|ENST00000336032|PNRC1;nc|ENSG00000146278|Q12796-2|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	ENSG00000146278|ENST00000336032|PNRC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2776794433594	2	510.277638	1018.54072	-0.10043	-5.1248E-05	-0.018729	-9.5571E-06	-0.11916	-6.0805E-05	510.2777720780724	13.947	0.8217	13.881	13.661	14.483	-0.066068					90	28	5	0	0	0	0.0011116	2	601	601;649		121.35	41.75	1	2576400			46625	4704	26812	26813	56846;56847	56846					0.032193669495200083
SVSSEQVLK	9	Unmodified	_SVSSEQVLK_					0	0	0		ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.76904296875	2	488.769114	975.523675	0.18749	9.1638E-05	-0.027927	-1.365E-05	0.15956	7.7988E-05	488.7689819186327	25.414	0.5301	25.414	25.153	25.683	0					41	17	4	0	0	0	0.064268	1	4043	4043		47.594	3.822	1	271500			46626	1874	26813	26814	56848	56848					0.03493446343713913
SVSSEQVLK	9	Unmodified	_SVSSEQVLK_					0	0	0		ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.76910400390625	2	488.769114	975.523675	0.028728	1.4041E-05	0.068732	3.3594E-05	0.09746	4.7635E-05	488.76905399784164	25.483	0.51682	25.428	25.134	25.65	-0.055931					41	17	3	0	0	0	0.069258	1	4059	4059		45.74	10.808	1	243470			46627	1874	26813	26814	56849	56849					0.03493446343713913
SVSSEQVLK	9	Unmodified	_SVSSEQVLK_					0	0	0		ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7691955566406	2	488.769114	975.523675	-0.0164	-8.016E-06	0.077835	3.8043E-05	0.061434	3.0027E-05	488.76907794052187	25.459	0.58395	25.428	25.181	25.764	-0.031408					58	20	4	0	0	0	0.048637	1	4066	4066		53.404	5.8096	1	307240			46628	1874	26813	26814	56850	56850					0.03493446343713913
SVSSPVKSK	9	Unmodified	_SVSSPVKSK_					0	0	0		MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant;MGA|p.R2396Qfs*8|1|0.14|ENSG00000174197|chr15:41757835-41757835|G/-|frameshift_variant;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;MGA|p.Q992Rfs*2|1|0.24|ENSG00000174197|chr15:41711239-41711239|C/-|frameshift_variant;MGA|p.L263*|1|0.27|ENSG00000174197|chr15:41669678-41669678|G/-|frameshift_variant;MGA|p.A602Vfs*3|1|0.13|ENSG00000174197|chr15:41696814-41696815|-/TTTT|frameshift_variant	MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant	MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.76629638671875	2	459.766374	917.518196	-0.23458	-0.00010785	0.14098	6.4819E-05	-0.093596	-4.3032E-05	459.76635918037385	13.068	0.84043	13	12.819	13.66	-0.067495					77	29	3	0	0	0	0.28225	1	470	470		11.495	1.4208	1	495570			46629	6777	26814	26815	56851	56851					0.056137675519039476
SVSSSSYRR	9	Unmodified	_SVSSSSYRR_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7596435546875	2	514.759612	1027.50467	-0.0077768	-4.0032E-06	0.13618	7.0099E-05	0.1284	6.6096E-05	514.7598586877834	13.504	0.71909	13.504	13.336	14.055	0					81	24	5	0	0	0	4.3881E-05	2	435	435;478		149.91	71.186	1	3506500			46630	537	26815	26816	56852;56853	56852					-0.007980902273402535
SVSSSSYRR	9	Unmodified	_SVSSSSYRR_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7597045898438	2	514.759612	1027.50467	-0.12184	-6.2717E-05	0.28004	0.00014416	0.15821	8.1438E-05	514.7599089137682	13.606	0.77281	13.507	13.337	14.11	-0.099291					83	27	4	0	0	0	0.00078391	2	503	458;503		125.53	56.424	1	3566900			46631	537	26815	26816	56854;56855	56855					-0.007980902273402535
SVSSSSYRR	9	Unmodified	_SVSSSSYRR_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7597045898438	2	514.759612	1027.50467	-0.17621	-9.0704E-05	0.28661	0.00014754	0.11041	5.6832E-05	514.759894055727	13.604	0.67615	13.537	13.359	14.035	-0.067496					81	23	5	0	0	0	4.3881E-05	3	498	455;498;562		149.91	71.186	1	3254300			46632	537	26815	26816	56856;56857;56858	56857					-0.007980902273402535
SVSSVNLQSK	10	Unmodified	_SVSSVNLQSK_					0	0	0			REV__ENSG00000100601|ENST00000216489|ALKBH1	REV__ENSG00000100601|ENST00000216489|ALKBH1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7750854492188	2	524.785296	1047.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.654	1	16.654	16.154	17.154	0								0	0	0	0.34683	1	1392	1392		16.149	4.6544	1		+		46633	14212	26816	26817	56859	56859					0.03416233746702346
SVSTDSIPR	9	Unmodified	_SVSTDSIPR_					0	0	0		ENST00000487389.5_1_3:146246602-146262351:-|nuORF	ENST00000487389.5_1_3:146246602-146262351:-|nuORF	ENST00000487389.5_1_3:146246602-146262351:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7674865722656	2	481.251089	960.487624	0.36946	0.0001778	1.4255	0.00068603	1.795	0.00086383	481.25170050809356	29.645	0.69965	29.645	29.218	29.917	0					39	24	2	0	0	0	0.19686	1	5315	5315		31.268	16.43	1	179320			46634	11118	26817	26818	56860	56860					0.005799891668630153
SVSTDSIPR	9	Unmodified	_SVSTDSIPR_					0	0	0		ENST00000487389.5_1_3:146246602-146262351:-|nuORF	ENST00000487389.5_1_3:146246602-146262351:-|nuORF	ENST00000487389.5_1_3:146246602-146262351:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.76751708984375	2	481.251089	960.487624	0.2793	0.00013441	1.4259	0.00068623	1.7052	0.00082065	481.2517442077631	29.627	0.75791	29.639	29.19	29.948	0.012266					44	25	3	0	0	0	0.16853	1	5290	5290		38.176	18.737	1	190940			46635	11118	26817	26818	56861	56861					0.005799891668630153
SVSTDSIPR	9	Unmodified	_SVSTDSIPR_					0	0	0		ENST00000487389.5_1_3:146246602-146262351:-|nuORF	ENST00000487389.5_1_3:146246602-146262351:-|nuORF	ENST00000487389.5_1_3:146246602-146262351:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.76727294921875	2	481.251089	960.487624	0.060779	2.925E-05	1.7596	0.00084681	1.8204	0.00087606	481.2517374353383	29.593	0.66184	29.607	29.248	29.91	0.013474					44	22	3	0	0	0	0.19686	1	5313	5313		24.991	11.085	1	262720			46636	11118	26817	26818	56862	56862					0.005799891668630153
SVSTFLKKK	9	Unmodified	_SVSTFLKKK_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.7510986328125	2	519.321317	1036.62808	0.18875	9.802E-05	-0.74831	-0.00038861	-0.55956	-0.00029059	519.3211208544445	19.191	0.56925	19.191	18.952	19.521	0					51	19	5	0	0	0	0.25527	1	2155	2155		8.7454	0.58988	1	181410			46637	4063	26818	26819	56863	56863					0.11123192891068356
SVSTHLITK	9	Unmodified	_SVSTHLITK_					0	0	0		nc|ENSG00000177873|Q8N2I2-2|ZNF619;ENST00000494154.6_1_3:40523704-40529729:+|nuORF;ENSG00000177873|ENST00000432264|ZNF619;nc|ENSG00000177873|Q8N2I2-4|ZNF619;nc|ENSG00000177873|Q8N2I2|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.287109375	2	493.287474	984.560395	0.16515	8.1467E-05	-3.6942	-0.0018223	-3.529	-0.0017408	493.2872267833542	22.699	0.72665	22.699	22.446	23.173	0					57	24	3	0	0	0	0.1426	1	3247	3247		32.037	14.925	1	157160			46638	7021	26819	26820	56864	56864					0.06749742960289495
SVSTHLITK	9	Unmodified	_SVSTHLITK_					0	0	0		nc|ENSG00000177873|Q8N2I2-2|ZNF619;ENST00000494154.6_1_3:40523704-40529729:+|nuORF;ENSG00000177873|ENST00000432264|ZNF619;nc|ENSG00000177873|Q8N2I2-4|ZNF619;nc|ENSG00000177873|Q8N2I2|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.2872314453125	2	493.287474	984.560395	0.16764	8.2695E-05	-3.707	-0.0018286	-3.5394	-0.0017459	493.2871848905728	22.839	0.73013	22.752	22.461	23.191	-0.08761					60	25	3	0	0	0	0.063898	2	3302	3267;3302		47.732	26.195	1	183560			46639	7021	26819	26820	56865;56866	56866					0.06749742960289495
SVSTHLITK	9	Unmodified	_SVSTHLITK_					0	0	0		nc|ENSG00000177873|Q8N2I2-2|ZNF619;ENST00000494154.6_1_3:40523704-40529729:+|nuORF;ENSG00000177873|ENST00000432264|ZNF619;nc|ENSG00000177873|Q8N2I2-4|ZNF619;nc|ENSG00000177873|Q8N2I2|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.28778076171875	2	493.287474	984.560395	0.22849	0.00011271	-3.3511	-0.001653	-3.1226	-0.0015403	493.28727412780984	22.833	0.75343	22.788	22.471	23.225	-0.044867					66	26	3	0	0	0	0.073988	1	3296	3296		43.982	24.725	1	173580			46640	7021	26819	26820	56867	56867					0.06749742960289495
SVSTKLISK	9	Unmodified	_SVSTKLISK_					0	0	0		ENSG00000157741|ENST00000473989|UBN2	ENSG00000157741|ENST00000473989|UBN2	ENSG00000157741|ENST00000473989|UBN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7977600097656	2	481.797675	961.580796	0.121	5.8297E-05	0.14532	7.0013E-05	0.26632	0.00012831	481.7977094819364	22.066	0.5117	22.066	21.819	22.331	0					42	18	3	0	0	0	0.05849	1	3042	3042		49.742	17.704	1	295780			46641	5323	26820	26821	56868	56868					0.0984691362009471
SVSTKLISK	9	Unmodified	_SVSTKLISK_					0	0	0		ENSG00000157741|ENST00000473989|UBN2	ENSG00000157741|ENST00000473989|UBN2	ENSG00000157741|ENST00000473989|UBN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.79779052734375	2	481.797675	961.580796	0.19976	9.6244E-05	-0.022572	-1.0875E-05	0.17719	8.5369E-05	481.7976331400058	22.152	0.6159	22.051	21.832	22.448	-0.10034					49	22	3	0	0	0	0.019446	1	3055	3055		64.927	24.688	1	331720			46642	5323	26820	26821	56869	56869					0.0984691362009471
SVSTKLISK	9	Unmodified	_SVSTKLISK_					0	0	0		ENSG00000157741|ENST00000473989|UBN2	ENSG00000157741|ENST00000473989|UBN2	ENSG00000157741|ENST00000473989|UBN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.7977600097656	2	481.797675	961.580796	0.11189	5.3907E-05	0.091025	4.3856E-05	0.20291	9.7763E-05	481.79771050315026	22.11	0.54445	22.061	21.83	22.375	-0.049377					48	19	3	0	0	0	0.0083763	1	3045	3045		81.915	34.321	1	298300			46643	5323	26820	26821	56870	56870					0.0984691362009471
SVSTPLIIK	9	Unmodified	_SVSTPLIIK_					0	0	0		ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.3025207519531	2	479.302593	956.590633	0.43641	0.00020917	-0.16256	-7.7917E-05	0.27384	0.00013125	479.3023780994173	44.42	0.54475	44.488	44.298	44.843	0.068569					30	19	2	0	0	0	0.21447	1	9856	9856		21.537	1.0834	1	421200			46644	548	26821	26822	56871	56871					0.11060101625480456
SVSTPLIIK	9	Unmodified	_SVSTPLIIK_					0	0	0		ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	ENSG00000029639|ENST00000367166|TFB1M	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.3022766113281	2	479.302593	956.590633	0.34615	0.00016591	-0.25337	-0.00012144	0.092776	4.4468E-05	479.3023877974069	44.405	0.54963	44.48	44.285	44.835	0.075047					34	19	3	0	0	0	0.17277	1	9847	9847		27.629	7.1752	1	392930			46645	548	26821	26822	56872	56872					0.11060101625480456
SVSTQQPPK	9	Unmodified	_SVSTQQPPK_					0	0	0		ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2614440917969	2	486.261456	970.50836	-0.034278	-1.6668E-05	-0.21258	-0.00010337	-0.24686	-0.00012004	486.2613743298734	15.153	0.69942	15.153	14.925	15.624	0					67	23	4	0	0	0	0.013404	2	933	933;980		74.2	30.427	1	654000			46646	4627	26822	26823	56873;56874	56873					0.02192579546522211
SVSTQQPPK	9	Unmodified	_SVSTQQPPK_					0	0	0		ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2613525390625	2	486.261456	970.50836	0.044215	2.15E-05	-0.37983	-0.0001847	-0.33562	-0.0001632	486.2613001579376	15.292	0.7909	15.182	14.905	15.696	-0.10981					70	27	4	0	0	0	0.017549	2	966	966;1014		67.838	15.899	1	708830			46647	4627	26822	26823	56875;56876	56875					0.02192579546522211
SVSTQQPPK	9	Unmodified	_SVSTQQPPK_					0	0	0		ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.26141357421875	2	486.261456	970.50836	0.0097696	4.7506E-06	-0.26071	-0.00012677	-0.25094	-0.00012202	486.2613110905242	15.294	0.71251	15.23	14.955	15.668	-0.064413					61	23	4	0	0	0	0.026579	1	968	968		61.602	25.096	1	779160			46648	4627	26822	26823	56877	56877					0.02192579546522211
SVSVRPHL	8	Unmodified	_SVSVRPHL_					0	0	0			REV__ENSG00000185775|ENST00000332857|SPATA31A6	REV__ENSG00000185775|ENST00000332857|SPATA31A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.76177978515625	2	447.761426	893.5083	0.23616	0.00010574	-0.0031169	-1.3956E-06	0.23304	0.00010435	447.7613222134129	30.116	0.73486	30.144	29.762	30.496	0.027946					43	25	2	0	0	0	0.34039	1	5490	5490		15.847	0	1	233640	+		46649	18408	26823	26824	56878	56878					0.057286243371777346
SVTALGFVLYK	11	Unmodified	_SVTALGFVLYK_					0	0	0		nc|ENSG00000189221|P21397-2|MAOA;ENSG00000189221|ENST00000338702|MAOA	nc|ENSG00000189221|P21397-2|MAOA	nc|ENSG00000189221|P21397-2|MAOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.3480834960938	2	599.347532	1196.68051	0.56457	0.00033838	0.088201	5.2863E-05	0.65277	0.00039124	599.3476283282042	68.669	0.63482	68.669	68.462	69.097	0					46	22	3	0	0	0	4.1027E-09	2	17309	17309;17367		151.48	65.148	1	507900			46650	7808	26824	26825	56879;56880	56879					0.09003731234020051
SVTALGFVLYK	11	Unmodified	_SVTALGFVLYK_					0	0	0		nc|ENSG00000189221|P21397-2|MAOA;ENSG00000189221|ENST00000338702|MAOA	nc|ENSG00000189221|P21397-2|MAOA	nc|ENSG00000189221|P21397-2|MAOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.8491821289062	2	599.347532	1196.68051	0.51499	0.00030866	0.12338	7.3947E-05	0.63837	0.0003826	599.3475436796773	68.635	0.53357	68.707	68.484	69.018	0.071938					34	19	2	0	0	0	4.1027E-09	1	17305	17305		151.48	65.148	1	495550			46651	7808	26824	26825	56881	56881					0.09003731234020051
SVTALGFVLYK	11	Unmodified	_SVTALGFVLYK_					0	0	0		nc|ENSG00000189221|P21397-2|MAOA;ENSG00000189221|ENST00000338702|MAOA	nc|ENSG00000189221|P21397-2|MAOA	nc|ENSG00000189221|P21397-2|MAOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.3485717773438	2	599.347532	1196.68051	0.43134	0.00025853	-0.011705	-7.0156E-06	0.41964	0.00025151	599.347624061811	68.7	0.61081	68.681	68.484	69.095	-0.01915					50	21	4	0	0	0	4.1027E-09	1	17304	17304		151.48	65.148	1	536490			46652	7808	26824	26825	56882	56882					0.09003731234020051
SVTALSILQ	9	Unmodified	_SVTALSILQ_					0	0	0		nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP;nc|ENSG00000164053|Q8WXE1-5|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP	nc|ENSG00000164053|Q8WXE1-2|ATRIP	nc|ENSG00000164053|Q8WXE1-2|ATRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.27655029296875	2	466.276575	930.538597	-0.00064709	-3.0172E-07	-0.23702	-0.00011052	-0.23767	-0.00011082	466.27656305009305	40.739	0.6754	40.739	40.55	41.225	0					56	24	3	0	0	0	0.041175	1	8749	8749		56.177	7.8312	1	811500			46653	5775	26825	26826	56883	56883					0.07054938211717854
SVTDKGSFEK	10	Unmodified	_SVTDKGSFEK_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2772827148438	2	549.277303	1096.54005	0.3621	0.00019889	-0.22709	-0.00012473	0.13501	7.4159E-05	549.2770712899601	17.47	0.68117	17.47	17.217	17.898	0					64	23	4	0	0	0	0.29048	1	1650	1650		21.59	3.4438	1	152120			46654	6097	26826	26827	56884	56884					-0.0043547249019866285
SVTDKGSFEK	10	Unmodified	_SVTDKGSFEK_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.27734375	2	549.277303	1096.54005	0.28472	0.00015639	0.11535	6.3357E-05	0.40006	0.00021975	549.2772274926986	17.695	0.98322	17.577	17.259	18.242	-0.11739					76	33	4	0	0	0	0.324	1	1725	1725		17.443	2.6044	1	137080			46655	6097	26826	26827	56885	56885					-0.0043547249019866285
SVTDKGSFEK	10	Unmodified	_SVTDKGSFEK_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.27734375	2	549.277303	1096.54005	0.37882	0.00020808	-0.94073	-0.00051672	-0.56192	-0.00030865	549.2772899200174	17.588	0.69872	17.527	17.33	18.028	-0.060429					68	24	4	0	0	0	0.21589	1	1700	1700		30.703	5.3041	1	145400			46656	6097	26826	26827	56886	56886					-0.0043547249019866285
SVTFERQPAYF	11	Unmodified	_SVTFERQPAYF_					0	0	0		BTBD9|p.S534Y|1|0.19|ENSG00000183826|chr6:38192559-38192559|G/T|missense_variant	BTBD9|p.S534Y|1|0.19|ENSG00000183826|chr6:38192559-38192559|G/T|missense_variant	BTBD9|p.S534Y|1|0.19|ENSG00000183826|chr6:38192559-38192559|G/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7694396972656	3	448.890944	1343.651	-0.023775	-1.0672E-05	-2.466	-0.001107	-2.4898	-0.0011176	448.8901354713061	29.837	0.17584	29.851	29.798	29.974	0.013474					6	5	2	0	0	0	0.33296	1	5385	5385		2.6312	1.4379	1	31044			46657	80	26827	26828	56887	56887					-0.007078327821091079
SVTFRDVTV	9	Unmodified	_SVTFRDVTV_					0	0	0		ENSG00000197951|ENST00000599599|ZNF71	ENSG00000197951|ENST00000599599|ZNF71	ENSG00000197951|ENST00000599599|ZNF71	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.84515380859375	2	512.277106	1022.53966	0.30415	0.00015581	2.7539	0.0014107	3.058	0.0015665	512.2784785225964	51.908	0.43285	51.908	51.536	51.969	0					23	15	2	0	0	0	0.21905	1	12055	12055		16.942	3.8998	1	467540			46658	8017	26828	26829	56888	56888					0.0292915258062294
SVTFYLQNLY	10	Unmodified	_SVTFYLQNLY_					0	0	0		ENSG00000178562|ENST00000324106|CD28;nc|ENSG00000178562|P10747-7|CD28	ENSG00000178562|ENST00000324106|CD28	ENSG00000178562|ENST00000324106|CD28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.21649169921875	3	416.548406	1246.62339	0.031033	1.2927E-05	0.84219	0.00035081	0.87323	0.00036374	416.54860459036087	18.491	0.40195	18.374	18.012	18.414	-0.11739					19	13	2	0	0	0	0.32033	1	1960	1960		0.62683	0.21856	1	25514			46659	7060	26829	26830	56889	56889					0.009942639576593137
SVTGKAESK	9	Unmodified	_SVTGKAESK_					0	0	0			REV__nc|ENSG00000196526|Q8N556|AFAP1	REV__nc|ENSG00000196526|Q8N556|AFAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7480163574219	2	453.748182	905.481811	-0.061207	-2.7772E-05	-0.20609	-9.3512E-05	-0.26729	-0.00012128	453.7480578095234	15.678	0.87743	15.678	15.471	16.349	0					71	30	3	0	0	0	0.23767	1	1130	1130		18.146	1.2041	1	332890	+		46660	18658	26830	26831	56890	56890					0.025288906551850232
SVTGSAVSK	9	Unmodified	_SVTGSAVSK_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.22943115234375	2	418.229625	834.444697	-0.3521	-0.00014726	0.33371	0.00013957	-0.018392	-7.6919E-06	418.2297232066694	14.151	0.94092	14.151	13.932	14.873	0					73	32	3	0	0	0	0.0045319	1	627	627		90.135	18.213	1	2132800			46661	1009	26831	26832	56891	56891					0.020852191094263617
SVTGSAVSK	9	Unmodified	_SVTGSAVSK_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.2295227050781	2	418.229625	834.444697	-0.18288	-7.6488E-05	0.24137	0.00010095	0.05848	2.4458E-05	418.22966843857404	14.217	1.1694	14.113	13.713	14.882	-0.10466					92	40	4	0	0	0	0.0073901	1	647	647		83.429	11.506	1	2397600			46662	1009	26831	26832	56892	56892					0.020852191094263617
SVTGSAVSK	9	Unmodified	_SVTGSAVSK_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2294921875	2	418.229625	834.444697	-0.20244	-8.4665E-05	0.096239	4.025E-05	-0.1062	-4.4415E-05	418.2296641546601	14.211	0.92857	14.145	13.687	14.616	-0.066067					83	32	5	0	0	0	0.0013924	1	646	646		117.76	53.8	1	1880700			46663	1009	26831	26832	56893	56893					0.020852191094263617
SVTIAPLKL	9	Unmodified	_SVTIAPLKL_					0	0	0			REV__ENST00000460773.5_1_X:138813815-138814653:-|nuORF	REV__ENST00000460773.5_1_X:138813815-138814653:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2868347167969	2	471.305136	940.595718	0.65686	0.00030958	-2.3516	-0.0011083	-1.6947	-0.00079873	471.3042588037792	50.178	0.48992	50.223	50.06	50.549	0.044891					28	17	2	0	0	0	0.1854	1	11600	11600		19.257	0	1	394010	+		46664	21207	26832	26833	56894	56894					0.12304405488077919
SVTIAPLKL	9	Unmodified	_SVTIAPLKL_					0	0	0			REV__ENST00000460773.5_1_X:138813815-138814653:-|nuORF	REV__ENST00000460773.5_1_X:138813815-138814653:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.28680419921875	2	471.305136	940.595718	0.71468	0.00033683	-2.74	-0.0012914	-2.0253	-0.00095455	471.3040827400559	50.2	0.42715	50.221	50.038	50.465	0.020691					27	15	2	0	0	0	0.1854	1	11585	11585		25.399	0	1	379970	+		46665	21207	26832	26833	56895	56895					0.12304405488077919
SVTIDYQQK	9	Unmodified	_SVTIDYQQK_					0	0	0			REV__nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	REV__nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2796020507812	2	541.279846	1080.54514	0.32561	0.00017625	-0.32709	-0.00017705	-0.001482	-8.0219E-07	541.2796675436803	16.18	0.59359	16.18	15.981	16.574	0					33	20	2	0	0	0	0.2719	1	1286	1286		13.042	2.9685	1	141210	+		46666	15690	26833	26834	56896	56896					0.008088313724329055
SVTIDYQQK	9	Unmodified	_SVTIDYQQK_					0	0	0			REV__nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	REV__nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2798461914062	2	541.279846	1080.54514	0.29102	0.00015752	0.084288	4.5623E-05	0.3753	0.00020314	541.2798410483255	16.309	0.51644	16.194	15.987	16.503	-0.11434					33	17	2	0	0	0	0.29638	1	1325	1325		9.3831	2.0939	1	140020	+		46667	15690	26833	26834	56897	56897					0.008088313724329055
SVTIDYQQK	9	Unmodified	_SVTIDYQQK_					0	0	0			REV__nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	REV__nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.279846	1080.54514	0.32561	0.00017625	-0.32709	-0.00017705	-0.001482	-8.0219E-07	541.2796675436803	16.18	0.59359	16.18	15.981	16.574	0	0.01005	-0.00016601	NaN	13.042	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141210	+		46668	15690	26833	26834							0.008088313724329055
SVTIDYQQK	9	Unmodified	_SVTIDYQQK_					0	0	0			REV__nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	REV__nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	541.279846	1080.54514	0.29102	0.00015752	0.084288	4.5623E-05	0.3753	0.00020314	541.2798410483255	16.309	0.51644	16.194	15.987	16.503	-0.11434	0.024613	0.00027933	NaN	13.042	33	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140020	+		46669	15690	26833	26834							0.008088313724329055
SVTIDYQQK	9	Unmodified	_SVTIDYQQK_					0	0	0			REV__nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	REV__nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.279846	1080.54514	0.4452	0.00024098	-0.38448	-0.00020811	0.060726	3.287E-05	541.2795970656889	16.198	0.55132	16.135	15.917	16.468	-0.062534	-0.034663	-0.00022814	NaN	13.042	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158310	+		46670	15690	26833	26834							0.008088313724329055
SVTKRGLNV	9	Unmodified	_SVTKRGLNV_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;ENST00000464072.1_1_2:191843483-191848388:-|nuORF	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.2932434082031	2	487.293091	972.571629	0.30745	0.00014982	-1.0324	-0.00050308	-0.72494	-0.00035326	487.2924752989867	80.939	0.89571	80.912	80.475	81.371	-0.026825					81	36	3	0	0	0	0.32371	1	21069	21069		5.2969	0	1	604700			46671	2643	26834	26835	56898	56898					0.08424565054417599
SVTKTALNK	9	Unmodified	_SVTKTALNK_					0	0	0		nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-7|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2873840332031	2	481.287474	960.560395	-0.11603	-5.5844E-05	0.12008	5.7791E-05	0.004046	1.9473E-06	481.2874859888237	14.354	0.44971	14.354	14.055	14.505	0					32	15	3	0	0	0	0.29638	1	714	714		9.3831	3.1773	1	133070			46672	7669	26835	26836	56899	56899					0.07853742960276122
SVTKTALNK	9	Unmodified	_SVTKTALNK_					0	0	0		nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-7|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.28753662109375	2	481.287474	960.560395	-0.066443	-3.1978E-05	0.23808	0.00011459	0.17164	8.2607E-05	481.2876424330264	14.432	0.49142	14.328	14.049	14.54	-0.10466					31	16	3	0	0	0	0.21447	1	746	746		21.537	7.6309	1	121810			46673	7669	26835	26836	56900	56900					0.07853742960276122
SVTKTALNK	9	Unmodified	_SVTKTALNK_					0	0	0		nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1;nc|ENSG00000187164|A0MZ66-7|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	nc|ENSG00000187164|A0MZ66-8|SHTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2872314453125	2	481.287474	960.560395	-0.063332	-3.0481E-05	0.31256	0.00015043	0.24923	0.00011995	481.28769625276414	14.453	0.54642	14.387	14.07	14.616	-0.066068					38	19	3	0	0	0	0.27726	1	740	740		12.241	2.8575	1	119890			46674	7669	26835	26836	56901	56901					0.07853742960276122
SVTQELKGE	9	Unmodified	_SVTQELKGE_					0	0	0			REV__ENSG00000176946|ENST00000407315|THAP4	REV__ENSG00000176946|ENST00000407315|THAP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7489013671875	2	495.758746	989.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.098	1	68.098	67.598	68.598	0								0	0	0	0.19534	1	17136	17136		24.021	1.2843	1		+		46675	17961	26836	26837	56902	56902					0.007768559640453532
SVTQIYHAV	9	Unmodified	_SVTQIYHAV_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8163146972656	2	509.271824	1016.5291	0.18547	9.4452E-05	-0.44503	-0.00022664	-0.25956	-0.00013219	509.27175053482233	39.966	1.0088	39.966	39.595	40.604	0					67	36	4	0	0	0	0.0039377	1	8505	8505		107.19	63.329	1	873950			46676	2840	26837	26838	56903	56903					0.021491699261900976
SVTQIYHAV	9	Unmodified	_SVTQIYHAV_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.81634521484375	2	509.271824	1016.5291	0.39859	0.00020299	-0.44799	-0.00022815	-0.049401	-2.5158E-05	509.271546050737	39.827	0.92257	39.919	39.662	40.585	0.09267					66	32	5	0	0	0	0.00047565	1	8447	8447		131.27	89.173	1	1163100			46677	2840	26837	26838	56904	56904					0.021491699261900976
SVTQIYHAV	9	Unmodified	_SVTQIYHAV_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8162536621094	2	509.271824	1016.5291	0.28269	0.00014397	-0.74354	-0.00037866	-0.46085	-0.0002347	509.2714973522421	39.745	1.0241	39.844	39.539	40.563	0.099403					72	36	4	0	0	0	0.00082776	1	8406	8406		118.89	78.937	1	1117000			46678	2840	26837	26838	56905	56905					0.021491699261900976
SVTQPQKQ	8	Unmodified	_SVTQPQKQ_					0	0	0		ENSG00000053770|ENST00000261558|AP5M1;nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF	ENSG00000053770|ENST00000261558|AP5M1	ENSG00000053770|ENST00000261558|AP5M1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.60015869140625	2	458.248349	914.482145	-0.23755	-0.00010886	-0.16187	-7.4175E-05	-0.39942	-0.00018303	458.24775517146975	13.218	0.4494	13.15	12.993	13.443	-0.067496					25	15	2	0	0	0	0.34167	1	376	376		11.64	0.81637	1	74071			46679	680	26838	26839	56906	56906					0.02148310375048368
SVTQVEKYYK	10	Unmodified	_SVTQVEKYYK_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.58209228515625	3	415.555561	1243.64485	0.096946	4.0286E-05	0.9554	0.00039702	1.0523	0.00043731	415.55600884946523	23.361	0.89494	23.273	22.79	23.685	-0.087608					58	31	3	0	0	0	0.31597	1	3424	3424		8.4443	0	1	180590	+		46680	14758	26839	26840	56907	56907					0.03277648986386339
SVTRHVCRK	9	Unmodified	_SVTRHVCRK_					0	0	0			REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7	REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3158569335938	2	543.303467	1084.59238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.73	1	33.73	33.23	34.23	0								0	0	0	0.21009	1	6575	6575		19.257	1.1106	1		+		46681	23005	26840	26841	56908	56908					0.05346832162422288
SVTVRPTPR	9	Unmodified	_SVTVRPTPR_					0	0	0			REV__nc|ENSG00000185985|Q9H156-2|SLITRK2	REV__nc|ENSG00000185985|Q9H156-2|SLITRK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3316650390625	2	506.79854	1011.58253	0.040542	2.0547E-05	-0.69714	-0.00035331	-0.6566	-0.00033276	506.7980106785491	27.717	0.3942	27.717	27.53	27.924	0					27	13	3	0	0	0	0.25323	1	4695	4695		10.074	2.1638	1	201000	+		46682	18427	26841	26842	56909	56909					0.07719967428704422
SVVARCIF	8	Unmodified	_SVVARCIF_					0	0	0			REV__ENST00000372661.3_X:102611453-102612049:+|nuORF	REV__ENST00000372661.3_X:102611453-102612049:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.76177978515625	2	447.746931	893.479308	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.172	1	30.2	29.7	30.7	0.027946								0	0	0	0.35014	1	5490	5490		14.582	4.3983	1		+		46683	20417	26842	26843	56910	56910					0.02830763716542606
SVVAVVSLLAA	11	Unmodified	_SVVAVVSLLAA_					0	0	0			REV__nc|ENSG00000188517|Q9BXS0-3|COL25A1	REV__nc|ENSG00000188517|Q9BXS0-3|COL25A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2666015625	2	514.82115	1027.62775	0.096684	4.9775E-05	0.079128	4.0737E-05	0.17581	9.0512E-05	514.8214737372059	59.699	0.53141	59.699	59.445	59.977	0					31	18	2	0	0	0	0.30294	1	14541	14541		24.991	3.454	1	779380	+		46684	18554	26843	26844	56911	56911					0.11503773171239118
SVVDEQDR	8	Unmodified	_SVVDEQDR_					0	0	0			REV__ENST00000487496.1_1_1:16265149-16265919:+|nuORF	REV__ENST00000487496.1_1_1:16265149-16265919:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.763916015625	2	474.225071	946.435589	0.029778	1.4121E-05	0.2605	0.00012353	0.29027	0.00013766	474.22507884817315	22.36	0.70225	22.312	21.974	22.676	-0.04797					36	23	2	0	0	0	0.34046	1	3068	3068		14.582	2.0501	1	68439	+		46685	13666	26844	26845	56912	56912					-0.039771742468929006
SVVEDMILK	9	Oxidation (M)	_SVVEDM(Oxidation (M))ILK_		SVVEDM(1)ILK		SVVEDM(110)ILK	0	0	1		ENSG00000163872|ENST00000305135|YEATS2;ENST00000481343.1_1_3:183525829-183527073:+|nuORF;ENST00000472593.1_1_3:183521690-183528368:+|nuORF	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2810668945312	2	525.281	1048.54745	0.35751	0.00018779	1.2431	0.00065298	1.6006	0.00084077	525.280925008181	41.313	0.90638	41.313	40.714	41.62	0					90	33	5	0	0	0	0.0024096	2	8910	8859;8910		106.94	59.191	1	2459900			46686	5747	26845	26846	56913;56914	56914		679			0.025115437858630685
SVVEDMILK	9	Oxidation (M)	_SVVEDM(Oxidation (M))ILK_		SVVEDM(1)ILK		SVVEDM(100)ILK	0	0	1		ENSG00000163872|ENST00000305135|YEATS2;ENST00000481343.1_1_3:183525829-183527073:+|nuORF;ENST00000472593.1_1_3:183521690-183528368:+|nuORF	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2810668945312	2	525.281	1048.54745	0.39308	0.00020648	0.10248	5.3831E-05	0.49556	0.00026031	525.2809136947949	41.193	0.6118	41.283	40.927	41.539	0.090252					59	22	3	0	0	0	0.0028542	2	8869	8822;8869		103.42	59.561	1	2480500			46687	5747	26845	26846	56915;56916	56916		679			0.025115437858630685
SVVEDMILK	9	Oxidation (M)	_SVVEDM(Oxidation (M))ILK_		SVVEDM(1)ILK		SVVEDM(110)ILK	0	0	1		ENSG00000163872|ENST00000305135|YEATS2;ENST00000481343.1_1_3:183525829-183527073:+|nuORF;ENST00000472593.1_1_3:183521690-183528368:+|nuORF	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2811889648438	2	525.281	1048.54745	0.38208	0.0002007	0.10292	5.406E-05	0.48499	0.00025476	525.2809049385407	41.079	0.64782	41.175	40.857	41.505	0.096622					57	23	3	0	0	0	0.0019475	2	8835	8790;8835		110.67	62.926	1	2447400			46688	5747	26845	26846	56917;56918	56918		679			0.025115437858630685
SVVEFTLKNKE	11	Unmodified	_SVVEFTLKNKE_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.90625	3	431.906482	1292.69762	-0.23414	-0.00010113	-0.5686	-0.00024558	-0.80274	-0.00034671	431.9062983491952	40.902	1.0048	40.902	40.55	41.555	0					130	36	5	0	0	0	0.40129	1	8797	8797		11.065	2.3135	1	7008700	+		46689	14115	26846	26847	56919	56919					0.06297607049168619
SVVEFTLKNKE	11	Unmodified	_SVVEFTLKNKE_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.9064025878906	3	431.906482	1292.69762	0.088151	3.8073E-05	-0.89928	-0.0003884	-0.81113	-0.00035033	431.90616277764326	40.646	1.0397	40.738	40.474	41.513	0.09267					137	38	5	0	0	0	0.39698	1	8744	8744		11.631	0.56609	1	8517700	+		46690	14115	26846	26847	56920	56920					0.06297607049168619
SVVEFTLKNKE	11	Unmodified	_SVVEFTLKNKE_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.9064025878906	3	431.906482	1292.69762	-0.10127	-4.3738E-05	-0.78715	-0.00033997	-0.88841	-0.00038371	431.9062057380084	40.62	0.99772	40.719	40.427	41.425	0.099403					127	36	5	0	0	0	0.42246	1	8718	8718		8.2864	2.0521	1	8822900	+		46691	14115	26846	26847	56921	56921					0.06297607049168619
SVVEKKRP	8	Unmodified	_SVVEKKRP_					0	0	0		ENSG00000141642|ENST00000269466|ELAC1	ENSG00000141642|ENST00000269466|ELAC1	ENSG00000141642|ENST00000269466|ELAC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.241455078125	2	471.790184	941.565815	0.17188	8.109E-05	-1.4395	-0.00067914	-1.2676	-0.00059805	471.7893888861801	23.135	0.46671	23.09	22.977	23.444	-0.044867					21	16	2	0	0	0	0.34408	1	3322	3322		2.3027	0	1	52465			46692	4401	26847	26848	56922	56922					0.0926946654275298
SVVEKLILR	9	Unmodified	_SVVEKLILR_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;UGT1A8|p.Y136Ifs*8|1|0.41|ENSG00000242366|chr2:233618110-233618111|-/A|frameshift_variant;UGT1A8|p.F150Pfs*9|1|0.04|ENSG00000242366|chr2:233618154-233618155|-/CCAGAGTG|frameshift_variant;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2822265625	2	528.842416	1055.67028	0.77066	0.00040756	-0.33944	-0.00017951	0.43122	0.00022805	528.8425259580779	44.726	0.54849	44.726	44.493	45.041	0					47	19	3	0	0	0	0.1303	1	9982	9982		42.312	15.089	1	774720			46693	8529;12963;8544;8548	26848	26849	56923	56923					0.14467168299461264
SVVEKLILR	9	Unmodified	_SVVEKLILR_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;UGT1A8|p.Y136Ifs*8|1|0.41|ENSG00000242366|chr2:233618110-233618111|-/A|frameshift_variant;UGT1A8|p.F150Pfs*9|1|0.04|ENSG00000242366|chr2:233618154-233618155|-/CCAGAGTG|frameshift_variant;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2821044921875	2	528.842416	1055.67028	0.5812	0.00030737	-0.26951	-0.00014253	0.3117	0.00016484	528.842494046385	44.579	0.71308	44.648	44.437	45.15	0.068569					52	25	3	0	0	0	0.045138	1	9915	9915		79.427	29.873	1	988370			46694	8529;12963;8544;8548	26848	26849	56924	56924					0.14467168299461264
SVVEKLILR	9	Unmodified	_SVVEKLILR_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;UGT1A8|p.Y136Ifs*8|1|0.41|ENSG00000242366|chr2:233618110-233618111|-/A|frameshift_variant;UGT1A8|p.F150Pfs*9|1|0.04|ENSG00000242366|chr2:233618154-233618155|-/CCAGAGTG|frameshift_variant;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2821044921875	2	528.842416	1055.67028	0.64133	0.00033916	-0.37134	-0.00019638	0.26999	0.00014278	528.8424714183852	44.578	0.84003	44.653	44.418	45.258	0.075047					61	30	3	0	0	0	0.081941	1	9884	9884		55.235	16.62	1	887330			46695	8529;12963;8544;8548	26848	26849	56925	56925					0.14467168299461264
SVVEYLLHH	9	Unmodified	_SVVEYLLHH_					0	0	0		ENSG00000173273|ENST00000310430|TNKS	ENSG00000173273|ENST00000310430|TNKS	ENSG00000173273|ENST00000310430|TNKS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.288330078125	2	548.792924	1095.57129	0.46216	0.00025363	0.45591	0.0002502	0.91807	0.00050383	548.7928832239132	52.454	0.35964	52.454	52.296	52.656	0					16	12	2	0	0	0	0.17611	1	12377	12377		34.102	10.954	1	644160			46696	6712	26849	26850	56926	56926					0.027331453345595946
SVVEYLLHH	9	Unmodified	_SVVEYLLHH_					0	0	0		ENSG00000173273|ENST00000310430|TNKS	ENSG00000173273|ENST00000310430|TNKS	ENSG00000173273|ENST00000310430|TNKS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.8631591796875	2	548.792924	1095.57129	0.55157	0.0003027	-0.10158	-5.5749E-05	0.44999	0.00024695	548.7927775880962	52.361	0.4291	52.412	52.228	52.657	0.050575					23	15	2	0	0	0	0.24311	1	12281	12281		16.942	6.1184	1	597050			46697	6712	26849	26850	56927	56927					0.027331453345595946
SVVEYLLQH	9	Unmodified	_SVVEYLLQH_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2;TNKS2|p.E1150Sfs*3|1|0.23|ENSG00000107854|chr10:91862946-91862946|G/-|frameshift_variant	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7020874023438	2	544.292756	1086.57096	0.28665	0.00015602	-0.11249	-6.1226E-05	0.17416	9.4794E-05	544.7928836590487	61.387	1.6463	61.484	60.608	62.254	0.096985					120	56	4	0	0	0	0.026033	1	15054	15054		63.961	31.655	1	1157700			46698	2152	26850	26851	56928	56928					0.031137256147076187
SVVEYLLQH	9	Unmodified	_SVVEYLLQH_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2;TNKS2|p.E1150Sfs*3|1|0.23|ENSG00000107854|chr10:91862946-91862946|G/-|frameshift_variant	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7020263671875	2	544.292756	1086.57096	0.32979	0.0001795	0.00044467	2.4203E-07	0.33024	0.00017974	544.7926480334216	61.372	0.96207	61.362	61.077	62.039	-0.0094566					61	34	2	0	0	0	0.051692	1	15081	15081		63.961	31.655	1	1297900			46699	2152	26850	26851	56929	56929					0.031137256147076187
SVVGLFLRH	9	Unmodified	_SVVGLFLRH_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000541652.5_1_12:121773337-121785669:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.3060913085938	2	514.306001	1026.59745	-0.00083843	-4.3121E-07	0.17846	9.1784E-05	0.17762	9.1353E-05	514.3058689638017	52.118	0.5344	52.117	51.876	52.411	-0.00080872					47	19	4	0	0	0	0.016723	1	12214	12214		69.105	38.468	1	567520			46700	1343	26851	26852	56930	56930					0.08521459296684952
SVVGLFLRH	9	Unmodified	_SVVGLFLRH_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000541652.5_1_12:121773337-121785669:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	514.306001	1026.59745	0.26785	0.00013776	-0.34625	-0.00017808	-0.078398	-4.0321E-05	514.3057821164304	52.002	0.5654	52.002	51.759	52.324	0	-0.016791	-0.00014018	NaN	69.105	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	510950			46701	1343	26851	26852							0.08521459296684952
SVVGLFLRH	9	Unmodified	_SVVGLFLRH_					0	0	0		nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000541652.5_1_12:121773337-121785669:-|nuORF	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	nc|ENSG00000089053|Q9UJX4-3|ANAPC5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	514.306001	1026.59745	0.27434	0.0001411	-0.4372	-0.00022485	-0.16285	-8.3756E-05	514.3056946571126	51.887	0.52436	51.937	51.758	52.282	0.050575	-0.081776	-0.00023373	NaN	69.105	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469790			46702	1343	26851	26852							0.08521459296684952
SVVKREKL	8	Unmodified	_SVVKREKL_					0	0	0		TRPS1|p.N1148Dfs*8|1|0.11|ENSG00000104447|chr8:115414400-115414427|CAACAGCTGAAAAATGAGGAGGCAGATT/-|frameshift_variant;nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;TRPS1|p.N1276Kfs*5|1|0.11|ENSG00000104447|chr8:115414041-115414042|-/T|frameshift_variant;ENSG00000104447|ENST00000395715|TRPS1	TRPS1|p.N1148Dfs*8|1|0.11|ENSG00000104447|chr8:115414400-115414427|CAACAGCTGAAAAATGAGGAGGCAGATT/-|frameshift_variant	TRPS1|p.N1148Dfs*8|1|0.11|ENSG00000104447|chr8:115414400-115414427|CAACAGCTGAAAAATGAGGAGGCAGATT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2525939941406	2	479.805834	957.597115	-0.098637	-4.7327E-05	0.011083	5.3179E-06	-0.087554	-4.2009E-05	479.80570222634054	28.171	0.53162	28.171	27.935	28.466	0.0004673					33	18	3	0	0	0	0.34294	1	4821	4821		7.2892	2.5332	1	218060			46703	1894	26852	26853	56931	56931					0.11662039576845018
SVVLKFLLS	9	Unmodified	_SVVLKFLLS_					0	0	0		ENST00000225388.8_1_17:27591126-27591243:-|nuORF	ENST00000225388.8_1_17:27591126-27591243:-|nuORF	ENST00000225388.8_1_17:27591126-27591243:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.81060791015625	2	503.320786	1004.62702	0.34397	0.00017313	-0.079311	-3.9919E-05	0.26466	0.00013321	503.3206788133294	68.332	0.82624	68.332	68.124	68.951	0					53	30	3	0	0	0	0.22674	1	17168	17168		22.736	6.8891	1	574390			46704	8843	26853	26854	56932	56932					0.12488978522196703
SVVLKFLLS	9	Unmodified	_SVVLKFLLS_					0	0	0		ENST00000225388.8_1_17:27591126-27591243:-|nuORF	ENST00000225388.8_1_17:27591126-27591243:-|nuORF	ENST00000225388.8_1_17:27591126-27591243:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.8106384277344	2	503.320786	1004.62702	0.25218	0.00012693	-0.033749	-1.6986E-05	0.21843	0.00010994	503.320617391985	68.287	0.8578	68.359	68.106	68.964	0.071938					55	31	3	0	0	0	0.22674	1	17133	17133		22.736	16.013	1	685900			46705	8843	26853	26854	56933	56933					0.12488978522196703
SVVLKFLLS	9	Unmodified	_SVVLKFLLS_					0	0	0		ENST00000225388.8_1_17:27591126-27591243:-|nuORF	ENST00000225388.8_1_17:27591126-27591243:-|nuORF	ENST00000225388.8_1_17:27591126-27591243:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.8105163574219	2	503.320786	1004.62702	0.40284	0.00020276	0.15469	7.7861E-05	0.55753	0.00028062	503.32071687331853	68.372	0.80033	68.353	68.095	68.895	-0.019157					51	28	3	0	0	0	0.22674	1	17159	17159		22.736	6.8891	1	661570			46706	8843	26853	26854	56934	56934					0.12488978522196703
SVVNFVIW	8	Unmodified	_SVVNFVIW_					0	0	0			REV__ENSG00000099822|ENST00000251287|HCN2	REV__ENSG00000099822|ENST00000251287|HCN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7641906738281	2	482.268553	962.522553	-0.10209	-4.9234E-05	-0.0017887	-8.6265E-07	-0.10388	-5.0097E-05	482.268328984213	13.263	0.23701	13.164	13.069	13.306	-0.099291					13	7	2	0	0	0	0.34319	1	346	346		5.7604	0.52976	1	71494	+		46707	14138	26854	26855	56935	56935					0.03979276765460327
SVVNLVDSI	9	Unmodified	_SVVNLVDSI_					0	0	0		nc|ENSG00000114948|O75077-3|ADAM23;nc|ENSG00000114948|O75077-2|ADAM23;ENSG00000114948|ENST00000264377|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	nc|ENSG00000114948|O75077-3|ADAM23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7561340332031	2	473.266207	944.517862	0.084186	3.9843E-05	-2.1482	-0.0010167	-2.064	-0.00097681	473.26624825525164	30.871	0.32477	30.898	30.704	31.029	0.027157					23	11	3	0	0	0	0.22674	1	5687	5687		22.736	3.4793	1	112960			46708	2596	26855	26856	56936	56936					0.04338347832049294
SVVNRLPLS	9	Unmodified	_SVVNRLPLS_					0	0	0		nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENSG00000127946|ENST00000336926|HIP1	nc|ENSG00000127946|O00291-3|HIP1	nc|ENSG00000127946|O00291-3|HIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2875061035156	2	492.795466	983.57638	0.18925	9.326E-05	-0.63674	-0.00031378	-0.44749	-0.00022052	492.7954400016152	23.505	1.0394	23.505	22.904	23.943	0					41	35	2	0	0	0	0.25938	1	3299	3299		4.3292	0	1	68626			46709	3340	26856	26857	56937	56937					0.08393449197183145
SVVPSPKVL	9	Unmodified	_SVVPSPKVL_					0	0	0		ENST00000545422.1_1_12:25593812-25593941:-|nuORF	ENST00000545422.1_1_12:25593812-25593941:-|nuORF	ENST00000545422.1_1_12:25593812-25593941:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.2770690917969	2	463.289485	924.564418	-0.020548	-9.5195E-06	-0.74136	-0.00034346	-0.7619	-0.00035298	463.2891879648177	49.916	0.2865	49.916	49.763	50.05	0					16	10	2	0	0	0	0.24467	1	11529	11529		17.113	0.1706	1	94158			46710	11753	26857	26858	56938	56938					0.09911832453997249
SVVQSGQLK	9	Unmodified	_SVVQSGQLK_					0	0	0		nc|ENSG00000167280|Q8NFI3-2|ENGASE;nc|ENSG00000167280|Q8NFI3-3|ENGASE;ENSG00000167280|ENST00000579016|ENGASE	nc|ENSG00000167280|Q8NFI3-2|ENGASE	nc|ENSG00000167280|Q8NFI3-2|ENGASE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.2721862792969	2	473.271824	944.529095	-0.014678	-6.9467E-06	0.69772	0.00033021	0.68304	0.00032326	473.2722510749949	22.247	0.57783	22.247	22.045	22.622	0					28	19	2	0	0	0	0.029232	1	3096	3096		84.522	32.254	1	242430			46711	6164	26858	26859	56939	56939					0.05461169926184084
SVVQSGQLK	9	Unmodified	_SVVQSGQLK_					0	0	0		nc|ENSG00000167280|Q8NFI3-2|ENGASE;nc|ENSG00000167280|Q8NFI3-3|ENGASE;ENSG00000167280|ENST00000579016|ENGASE	nc|ENSG00000167280|Q8NFI3-2|ENGASE	nc|ENSG00000167280|Q8NFI3-2|ENGASE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.2725524902344	2	473.271824	944.529095	0.11759	5.5654E-05	0.51396	0.00024324	0.63155	0.0002989	473.2721495251988	22.367	0.83394	22.266	21.944	22.777	-0.10034					73	30	4	0	0	0	0.018042	1	3124	3124		67.081	23.099	1	290000			46712	6164	26858	26859	56940	56940					0.05461169926184084
SVVQSGQLK	9	Unmodified	_SVVQSGQLK_					0	0	0		nc|ENSG00000167280|Q8NFI3-2|ENGASE;nc|ENSG00000167280|Q8NFI3-3|ENGASE;ENSG00000167280|ENST00000579016|ENGASE	nc|ENSG00000167280|Q8NFI3-2|ENGASE	nc|ENSG00000167280|Q8NFI3-2|ENGASE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.27239990234375	2	473.271824	944.529095	0.031722	1.5013E-05	0.71652	0.00033911	0.74824	0.00035412	473.27227527523894	22.284	0.804	22.235	21.926	22.73	-0.049377					73	27	4	0	0	0	0.194	1	3113	3113		34.222	12.632	1	268510			46713	6164	26858	26859	56941	56941					0.05461169926184084
SVVRETAA	8	Unmodified	_SVVRETAA_					0	0	0			REV__nc|ENSG00000106018|P41587-2|VIPR2	REV__nc|ENSG00000106018|P41587-2|VIPR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.8642578125	2	416.729792	831.445031	0.11451	4.7721E-05	-3.7458	-0.001561	-3.6313	-0.0015133	416.72864286666623	22.395	0.24032	22.295	22.125	22.366	-0.10034					11	8	2	0	0	0	0.34319	1	3095	3095		0.69038	0	1	30405	+		46714	22930	26859	26860	56942	56942					0.02256638829271651
SVVRSRNL	8	Unmodified	_SVVRSRNL_					0	0	0		ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7778015136719	2	465.777608	929.540663	-0.038226	-1.7805E-05	0.012882	6.0002E-06	-0.025344	-1.1804E-05	465.7775179785788	69.527	2.238	69.593	68.671	70.909	0.06604					122	80	2	0	0	0	0.4419	1	17830	17830		8.5933	0.68312	1	478700			46715	7273	26860	26861	56943	56943					0.07307411740168845
SVVSAALRV	9	Unmodified	_SVVSAALRV_					0	0	0		ENST00000494161.1_1_3:47545928-47555166:-|nuORF;ENST00000296149.8_1_3:47552709-47555223:-|nuORF	ENST00000494161.1_1_3:47545928-47555166:-|nuORF	ENST00000494161.1_1_3:47545928-47555166:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2479553222656	2	451.276909	900.539266	-0.044844	-2.0237E-05	0.61289	0.00027658	0.56805	0.00025635	451.2772384277566	28.553	0.39543	28.554	28.41	28.805	0.00046921					30	13	3	0	0	0	0.24848	1	5042	5042		13.906	0	1	135810			46716	9180	26861	26862	56944	56944					0.08501777651417797
SVVSDILFK	9	Unmodified	_SVVSDILFK_					0	0	0		ENSG00000167202|ENST00000300584|TBC1D2B;nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;nc|ENSG00000167202|Q9UPU7-3|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF	ENSG00000167202|ENST00000300584|TBC1D2B	ENSG00000167202|ENST00000300584|TBC1D2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2923889160156	2	504.292225	1006.5699	0.38584	0.00019457	0.30351	0.00015306	0.68935	0.00034763	504.2924384710829	62.646	1.236	62.646	62.266	63.502	0					117	45	4	0	0	0	0.0045319	1	15437	15437		90.135	50.185	1	7634900			46717	6158	26862	26863	56945	56945					0.06687511245809219
SVVSDILFK	9	Unmodified	_SVVSDILFK_					0	0	0		ENSG00000167202|ENST00000300584|TBC1D2B;nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;nc|ENSG00000167202|Q9UPU7-3|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF	ENSG00000167202|ENST00000300584|TBC1D2B	ENSG00000167202|ENST00000300584|TBC1D2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.29241943359375	2	504.292225	1006.5699	0.39536	0.00019937	0.29739	0.00014997	0.69275	0.00034935	504.29244131753893	62.521	1.2861	62.618	62.254	63.54	0.096989					105	46	4	0	0	0	0.0013683	2	15389	15389;15435		118.07	65.8	1	8075900			46718	6158	26862	26863	56946;56947	56946					0.06687511245809219
SVVSDILFK	9	Unmodified	_SVVSDILFK_					0	0	0		ENSG00000167202|ENST00000300584|TBC1D2B;nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;nc|ENSG00000167202|Q9UPU7-3|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF	ENSG00000167202|ENST00000300584|TBC1D2B	ENSG00000167202|ENST00000300584|TBC1D2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2925109863281	2	504.292225	1006.5699	0.33623	0.00016956	0.3426	0.00017277	0.67883	0.00034233	504.2924736150167	62.623	1.7445	62.614	62.219	63.963	-0.0085564					127	63	4	0	0	0	0.0037449	1	15443	15443		96.367	58.393	1	7424800			46719	6158	26862	26863	56948	56948					0.06687511245809219
SVVSIVIGK	9	Unmodified	_SVVSIVIGK_					0	0	0		nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.27154541015625	2	451.289485	900.564418	0.18522	8.359E-05	-0.41422	-0.00018693	-0.22899	-0.00010334	451.28908678117494	49.875	0.48219	49.875	49.626	50.108	0					34	17	3	0	0	0	0.20881	1	11499	11499		27.629	10.516	1	364280			46720	12714	26863	26864	56949	56949					0.11015832453995245
SVVSIVIGK	9	Unmodified	_SVVSIVIGK_					0	0	0		nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2714538574219	2	451.289485	900.564418	0.24739	0.00011164	-0.87446	-0.00039463	-0.62707	-0.00028299	451.28898606652984	49.803	0.515	49.848	49.645	50.16	0.044891					32	19	2	0	0	0	0.20881	1	11502	11502		27.629	13.723	1	290270			46721	12714	26863	26864	56950	56950					0.11015832453995245
SVVSIVIGK	9	Unmodified	_SVVSIVIGK_					0	0	0		nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	nc|ENSG00000136144|Q8NDN9-2|RCBTB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.271484375	2	451.289485	900.564418	0.24646	0.00011123	-0.4867	-0.00021964	-0.24024	-0.00010842	451.28911266516775	49.826	0.4214	49.846	49.617	50.038	0.020691					24	15	2	0	0	0	0.20881	1	11492	11492		27.629	12.791	1	338720			46722	12714	26863	26864	56951	56951					0.11015832453995245
SVVSLWLV	8	Unmodified	_SVVSLWLV_					0	0	0			REV__ENSG00000169181|ENST00000447459|GSG1L	REV__ENSG00000169181|ENST00000447459|GSG1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.77105712890625	2	451.770929	901.527304	0.36275	0.00016388	-0.098265	-4.4393E-05	0.26449	0.00011949	451.77077900136135	86.587	0.37152	86.587	86.485	86.857	0					24	14	2	0	0	0	0.34092	1	22810	22810		13.508	1.8676	1	115930	+		46723	17502	26864	26865	56952	56952					0.07260160908242597
SVVSRRKA	8	Unmodified	_SVVSRRKA_					0	0	0		ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	ENSG00000152382|ENST00000367874|TADA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.75860595703125	2	451.780151	901.545748	0.17039	7.6978E-05	-0.13316	-6.0159E-05	0.037229	1.6819E-05	451.7799550589035	76.514	0.92776	76.514	76.252	77.179	0					64	33	2	0	0	0	0.34337	1	19657	19657		2.3027	0	1	373380			46724	5017	26865	26866	56953	56953					0.09103715602793727
SVVTNAIKT	9	Unmodified	_SVVTNAIKT_					0	0	0		ENST00000474293.2_1_6:127775237-127796815:-|nuORF	ENST00000474293.2_1_6:127775237-127796815:-|nuORF	ENST00000474293.2_1_6:127775237-127796815:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.283935546875	2	466.7742	931.533846	-0.068156	-3.1814E-05	0.16708	7.7986E-05	0.098919	4.6173E-05	466.7742422450746	24.352	0.68777	24.352	23.917	24.605	0					41	23	2	0	0	0	0.24636	1	3675	3675		11.495	1.4208	1	108030			46725	10921	26866	26867	56954	56954					0.06534054068947626
SVVVLYKKV	9	Unmodified	_SVVVLYKKV_					0	0	0		nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.323974609375	2	517.83406	1033.65357	0.32901	0.00017037	0.65246	0.00033787	0.98146	0.00050824	518.3359934126743	43.814	0.83915	43.814	43.441	44.28	0					39	30	2	0	0	0	0.25066	1	9590	9590		11.64	0	1	145030			46726	4867	26867	26868	56955	56955					0.1380866741351383
SVWELLSLER	10	Unmodified	_SVWELLSLER_					0	0	0			REV__ENST00000398632.3_1_21:42774955-42775423:+|nuORF	REV__ENST00000398632.3_1_21:42774955-42775423:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.5423278808594	3	411.227556	1230.66084	0.0050483	2.076E-06	0.15925	6.5489E-05	0.1643	6.7565E-05	411.22763615416693	17.77	0.81086	17.71	17.414	18.225	-0.060429					56	28	3	0	0	0	0.31926	1	1804	1804		3.0723	0.22898	1	101900	+		46727	20684	26868	26869	56956	56956					0.054733552232846705
SVWFGGRE	8	Unmodified	_SVWFGGRE_					0	0	0		nc|ENSG00000127419|Q9BSA9-2|TMEM175;ENSG00000127419|ENST00000264771|TMEM175	nc|ENSG00000127419|Q9BSA9-2|TMEM175	nc|ENSG00000127419|Q9BSA9-2|TMEM175	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.92047119140625	2	469.229959	936.445365	-0.18805	-8.8237E-05	-0.73523	-0.00034499	-0.92328	-0.00043323	469.2294483627255	23.066	0.52061	23.066	22.815	23.336	0					28	17	2	0	0	0	0.34337	1	3348	3348		5.2307	0.47466	1	93318			46728	3319	26869	26870	56957	56957					-0.025399414508456175
SVWFQRRIPR	10	Unmodified	_SVWFQRRIPR_					0	0	0		ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	ENSG00000161714|ENST00000619929|PLCD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.77764892578125	3	448.926434	1343.75747	0.1994	8.9517E-05	-2.8159	-0.0012642	-2.6165	-0.0011746	448.924883457332	32.946	0.3852	33.001	32.818	33.203	0.054371					18	13	2	0	0	0	0.31994	1	6373	6373		5.4027	0.35519	1	156360			46729	5527	26870	26871	56958	56958					0.09934387293742475
SVWKWLMHK	9	Unmodified	_SVWKWLMHK_					0	0	0			REV__ENSG00000153246|ENST00000283243|PLA2R1	REV__ENSG00000153246|ENST00000283243|PLA2R1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5440368652344	3	405.55495	1213.64302	0.10288	4.1724E-05	0.9991	0.00040519	1.102	0.00044691	405.5555396047935	35.973	0.62729	36.059	35.645	36.272	0.086246					37	22	3	0	0	0	0.25441	1	7239	7239		6.6304	1.9145	1	168820	+		46730	16619	26871	26872	56959	56959					0.04474361487427814
SVWLKRKQRC	10	Unmodified	_SVWLKRKQRC_					0	0	0			REV__ENST00000546661.1_1_12:53910923-53918651:-|nuORF	REV__ENST00000546661.1_1_12:53910923-53918651:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7800598144531	3	435.252041	1302.73429	-0.16918	-7.3637E-05	-0.82685	-0.00035989	-0.99603	-0.00043352	435.25195244552214	30.917	0.57178	30.944	30.669	31.241	0.027157					43	20	3	0	0	0	0.31942	1	5734	5734		3.5871	0.95582	1	217370	+		46731	17592	26872	26873	56960	56960					0.09503625184765951
SVWMFLPLVF	10	Unmodified	_SVWMFLPLVF_					0	0	0		nc|ENSG00000249242|B9EJG8-2|TMEM150C;ENSG00000249242|ENST00000449862|TMEM150C	nc|ENSG00000249242|B9EJG8-2|TMEM150C	nc|ENSG00000249242|B9EJG8-2|TMEM150C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2269592285156	3	413.559589	1237.65694	-0.34876	-0.00014423	1.8845	0.00077935	1.5357	0.00063511	413.5605403390576	14.166	0.31006	14.166	14.055	14.365	0					17	10	2	0	0	0	0.32051	1	648	648		3.8763	0.55669	1	68077			46732	8584	26873	26874	56961	56961					0.047615941958611074
SVWMFLPLVF	10	Unmodified	_SVWMFLPLVF_					0	0	0		nc|ENSG00000249242|B9EJG8-2|TMEM150C;ENSG00000249242|ENST00000449862|TMEM150C	nc|ENSG00000249242|B9EJG8-2|TMEM150C	nc|ENSG00000249242|B9EJG8-2|TMEM150C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2268981933594	3	413.559589	1237.65694	-0.12266	-5.0727E-05	1.6969	0.00070176	1.5742	0.00065103	413.5603978205737	14.238	0.53759	14.172	13.917	14.455	-0.066068					28	18	2	0	0	0	0.32051	1	665	665		3.8763	0.030424	1	49745			46733	8584	26873	26874	56962	56962					0.047615941958611074
SVWRMHLS	8	Unmodified	_SVWRMHLS_					0	0	0			REV__chr11:103391535-103399663|312|10.06|0.06|7.28|+|0|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|77	REV__chr11:103391535-103399663|312|10.06|0.06|7.28|+|0|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|77	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.81646728515625	2	508.260736	1014.50692	0.39141	0.00019894	-3.2588	-0.0016563	-2.8674	-0.0014574	508.761081972848	40.134	0.16988	40.234	40.118	40.288	0.099407					7	5	2	0	0	0	0.34039	1	8504	8504		15.847	1.0089	1	131480	+		46734	13170	26874	26875	56963	56963					0.0002466697678755736
SVYAGGRGPAK	11	Unmodified	_SVYAGGRGPAK_					0	0	0		ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.7880859375	2	531.788173	1061.56179	0.21451	0.00011407	0.0097539	5.187E-06	0.22427	0.00011926	531.7880383374644	15.261	0.61246	15.261	15.012	15.624	0					47	20	3	0	0	0	0.2197	2	961	961;1013		29.437	17.197	1	190160			46735	9183	26875	26876	56964;56965	56964					0.03347377049021816
SVYAGGRGPAK	11	Unmodified	_SVYAGGRGPAK_					0	0	0		ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7882080078125	2	531.788173	1061.56179	0.1577	8.3863E-05	-0.1576	-8.3809E-05	0.00010239	5.4447E-08	531.7879936528249	15.403	0.86026	15.293	15.01	15.871	-0.10981					57	29	3	0	0	0	0.13465	3	1010	1010;1061;1073		37.075	22.669	1	198180			46736	9183	26875	26876	56966;56967;56968	56966					0.03347377049021816
SVYAGGRGPAK	11	Unmodified	_SVYAGGRGPAK_					0	0	0		ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	ENST00000296473.7_3_3:49967084-49967270:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7882690429688	2	531.788173	1061.56179	0.1968	0.00010466	-0.012066	-6.4168E-06	0.18474	9.824E-05	531.7880232355893	15.384	0.50477	15.32	15.1	15.605	-0.064414					41	16	3	0	0	0	0.069058	2	1013	1013;1061		47.732	26.195	1	228970			46737	9183	26875	26876	56969;56970	56969					0.03347377049021816
SVYDALPLTR	10	Unmodified	_SVYDALPLTR_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000531957.1_1_11:108164147-108165800:+|nuORF;ENST00000531525.2_1_11:108160471-108165800:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.299560546875	2	567.811313	1133.60807	0.53375	0.00030307	-0.81765	-0.00046427	-0.2839	-0.0001612	567.8108954580177	54.405	0.95287	54.405	53.884	54.837	0					74	34	4	0	0	0	0.071938	1	12891	12891		66.683	46.268	1	2845900			46738	62	26876	26877	56971	56971					0.04661397160452907
SVYDALPLTR	10	Unmodified	_SVYDALPLTR_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000531957.1_1_11:108164147-108165800:+|nuORF;ENST00000531525.2_1_11:108160471-108165800:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.811279296875	2	567.811313	1133.60807	0.48403	0.00027484	-0.64279	-0.00036498	-0.15876	-9.0146E-05	567.8110131330023	54.506	1.0041	54.49	54.002	55.006	-0.015919					70	35	4	0	0	0	0.0037867	1	12949	12949		98.73	62.224	1	2815700			46739	62	26876	26877	56972	56972					0.04661397160452907
SVYDALPLTR	10	Unmodified	_SVYDALPLTR_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000531957.1_1_11:108164147-108165800:+|nuORF;ENST00000531525.2_1_11:108160471-108165800:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	567.811313	1133.60807	0.62779	0.00035646	-0.85892	-0.0004877	-0.23113	-0.00013124	567.8109259997445	54.372	0.71862	54.435	54.115	54.834	0.063202	-0.0082993	-8.628E-05	NaN	98.73	64	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2781300			46740	62	26876	26877							0.04661397160452907
SVYDALPLTRL	11	Unmodified	_SVYDALPLTRL_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000531957.1_1_11:108164147-108165800:+|nuORF;ENST00000531525.2_1_11:108160471-108165800:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.353515625	2	624.353345	1246.69214	0.341	0.00021291	-0.22385	-0.00013976	0.11715	7.3143E-05	624.3532587884348	70.152	0.92505	70.152	69.732	70.657	0					101	33	4	0	0	0	1.9008E-05	3	17763	17721;17763;17811		115.82	95.407	1	1811300			46741	62	26877	26878	56973;56974;56975	56974					0.0786592825736534
SVYDALPLTRL	11	Unmodified	_SVYDALPLTRL_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000531957.1_1_11:108164147-108165800:+|nuORF;ENST00000531525.2_1_11:108160471-108165800:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.353515625	2	624.353345	1246.69214	0.020999	1.3111E-05	-0.36576	-0.00022836	-0.34476	-0.00021525	624.3533927986832	70.052	1.4161	70.118	69.518	70.934	0.06604					121	50	4	0	0	0	1.587E-06	3	17756	17711;17756;17802		132.22	99.434	1	1855800			46742	62	26877	26878	56976;56977;56978	56977					0.0786592825736534
SVYDALPLTRL	11	Unmodified	_SVYDALPLTRL_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000531957.1_1_11:108164147-108165800:+|nuORF;ENST00000531525.2_1_11:108160471-108165800:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3534545898438	2	624.353345	1246.69214	0.21135	0.00013196	-0.31956	-0.00019952	-0.10821	-6.7564E-05	624.3532868444748	70.167	1.2236	70.145	69.804	71.027	-0.022087					107	43	4	0	0	0	8.5601E-06	3	17765	17718;17765;17810		125.66	99.388	1	1970600			46743	62	26877	26878	56979;56980;56981	56980					0.0786592825736534
SVYDFDRFSR	10	Unmodified	_SVYDFDRFSR_					0	0	0		ENSG00000110975|ENST00000228567|SYT10;SYT10|p.Y402Lfs*9|1|0.03|ENSG00000110975|chr12:33382515-33382516|-/G|frameshift_variant;ENSG00000170743|ENST00000318881|SYT9;ENSG00000213023|ENST00000600079|SYT3	ENSG00000110975|ENST00000228567|SYT10	ENSG00000110975|ENST00000228567|SYT10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8880920410156	3	431.207043	1290.5993	-0.059288	-2.5565E-05	3.3329	0.0014372	3.2736	0.0014116	431.2081289834294	23.413	0.080772	23.368	23.334	23.414	-0.044867					4	2	2	0	0	0	0.32143	1	3444	3444		1.5923	0	1	24909			46744	2340	26878	26879	56982	56982					-0.03437576476017057
SVYDGEEHGR	10	Unmodified	_SVYDGEEHGR_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;EXOC6B|p.F423Lfs*5|1|0.34|ENSG00000144036|chr2:72498522-72498522|A/-|frameshift_variant	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.7523803710938	2	574.751984	1147.48942	0.1442	8.2879E-05	0.96338	0.00055371	1.1076	0.00063659	574.7525103492394	16.369	0.42978	16.255	16.047	16.476	-0.11434					24	14	2	0	0	0	0.39427	1	1335	1335		4.5289	3.1993	1	34258			46745	4560	26879	26880	56983	56983					-0.07843001815172101
SVYDGEEHGR	10	Unmodified	_SVYDGEEHGR_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;EXOC6B|p.F423Lfs*5|1|0.34|ENSG00000144036|chr2:72498522-72498522|A/-|frameshift_variant	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.75244140625	2	574.751984	1147.48942	0.13825	7.9458E-05	0.7925	0.00045549	0.93075	0.00053495	574.7523786506235	16.183	0.34427	16.121	16.038	16.382	-0.062534					22	11	3	0	0	0	0.39427	1	1261	1261		4.5289	3.3355	1	34709			46746	4560	26879	26880	56984	56984					-0.07843001815172101
SVYDGEEHGR	10	Unmodified	_SVYDGEEHGR_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;EXOC6B|p.F423Lfs*5|1|0.34|ENSG00000144036|chr2:72498522-72498522|A/-|frameshift_variant	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	574.751984	1147.48942	0.083027	4.772E-05	0.52419	0.00030128	0.60722	0.000349	574.7523447033685	16.245	0.56616	16.245	16.008	16.574	0	0.038427	-0.0002721	NaN	4.5289	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52928			46747	4560	26879	26880							-0.07843001815172101
SVYDHQGIFK	10	Unmodified	_SVYDHQGIFK_					0	0	0		ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3016967773438	2	597.301113	1192.58767	0.57193	0.00034162	0.052895	3.1594E-05	0.62483	0.00037321	597.3011258642605	36.284	0.58084	36.284	36.093	36.673	0					48	20	3	0	0	0	0.0053513	2	7333	7333;7385		89.609	71.462	1	743420			46748	5098	26880	26881	56985;56986	56985					-0.00091773499343617
SVYDHQGIFK	10	Unmodified	_SVYDHQGIFK_					0	0	0		ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.3013305664062	2	597.301113	1192.58767	0.6544	0.00039088	-0.22004	-0.00013143	0.43436	0.00025945	597.3009648992622	36.19	0.64283	36.273	36.008	36.651	0.082359					42	22	3	0	0	0	0.0037867	2	7297	7297;7344		98.73	77.193	1	803040			46749	5098	26880	26881	56987;56988	56987					-0.00091773499343617
SVYDHQGIFK	10	Unmodified	_SVYDHQGIFK_					0	0	0		ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.3016357421875	2	597.301113	1192.58767	0.68443	0.00040881	-0.23383	-0.00013967	0.4506	0.00026914	597.3009360753333	36.165	0.55201	36.251	36.009	36.561	0.08625					43	19	3	0	0	0	0.018653	2	7282	7282;7350		73.196	55.05	1	926590			46750	5098	26880	26881	56989;56990	56989					-0.00091773499343617
SVYDHQGIFKR	11	Unmodified	_SVYDHQGIFKR_					0	0	0		ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.57025146484375	3	450.570204	1348.68878	0.050771	2.2876E-05	-0.34258	-0.00015436	-0.29181	-0.00013148	450.5702818736815	31.124	0.88601	31.124	30.781	31.667	0					130	31	6	0	0	0	0.0013714	5	5765	5717;5765;5809;5857;5902		91.694	80.629	1	6261700			46751	5098	26881	26882	56991;56992;56993;56994;56995	56992					0.02838678203352174
SVYDHQGIFKR	11	Unmodified	_SVYDHQGIFKR_					0	0	0		ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.5703125	3	450.570204	1348.68878	-0.066851	-3.0121E-05	-0.18745	-8.4459E-05	-0.2543	-0.00011458	450.57031314313207	31.129	1.0302	31.157	30.778	31.809	0.027946					121	36	5	0	0	0	0.0052625	4	5773	5727;5773;5818;5867		79.697	60.553	1	7100200			46752	5098	26881	26882	56996;56997;56998;56999	56997					0.02838678203352174
SVYDHQGIFKR	11	Unmodified	_SVYDHQGIFKR_					0	0	0		ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.5703430175781	3	450.570204	1348.68878	0.12063	5.435E-05	-0.42033	-0.00018939	-0.2997	-0.00013504	450.570218010434	31.047	0.90018	31.074	30.733	31.634	0.027157					113	32	6	0	0	0	0.0016763	4	5752	5707;5752;5799;5847		87.442	72.605	1	6926000			46753	5098	26881	26882	57000;57001;57002;57003	57001					0.02838678203352174
SVYDSVLQK	9	Unmodified	_SVYDSVLQK_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.777099609375	2	519.776939	1037.53933	0.31626	0.00016439	-0.063711	-3.3116E-05	0.25255	0.00013127	519.7768892108168	40.888	0.80542	40.888	40.576	41.382	0					86	29	4	0	0	0	4.8913E-11	1	8763	8763		187.3	118.19	1	6623200			46754	3536	26882	26883	57004	57004					0.022057328607616
SVYDSVLQK	9	Unmodified	_SVYDSVLQK_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7771606445312	2	519.776939	1037.53933	0.49369	0.00025661	-0.17321	-9.0028E-05	0.32049	0.00016658	519.7768280444561	40.639	0.85535	40.732	40.42	41.275	0.092674					88	31	4	0	0	0	1.6536E-07	3	8697	8650;8697;8745		173.69	111.11	1	6847600			46755	3536	26882	26883	57005;57006;57007	57006					0.022057328607616
SVYDSVLQK	9	Unmodified	_SVYDSVLQK_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.777099609375	2	519.776939	1037.53933	0.33621	0.00017475	0.012257	6.3708E-06	0.34847	0.00018112	519.7769214760553	40.597	0.83874	40.696	40.397	41.236	0.099407					79	30	4	0	0	0	1.6536E-07	3	8678	8628;8667;8678		173.69	101.76	1	7048600			46756	3536	26882	26883	57008;57009;57010	57010					0.022057328607616
SVYEKHSF	8	Unmodified	_SVYEKHSF_					0	0	0		nc|ENSG00000140471|Q8NG48-2|LINS1;nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;ENSG00000140471|ENST00000314742|LINS1	nc|ENSG00000140471|Q8NG48-2|LINS1	nc|ENSG00000140471|Q8NG48-2|LINS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.820556640625	2	498.742899	995.471246	0.56254	0.00028056	0.69243	0.00034535	1.255	0.00062591	498.7433462381682	84.897	0.40079	84.884	84.738	85.139	-0.01284					22	16	2	0	0	0	0.34218	1	22296	22296		9.3474	0	1	188220			46757	12728	26883	26884	57011	57011					-0.026670919992284325
SVYGIPDPQFK	11	Unmodified	_SVYGIPDPQFK_					0	0	0		nc|ENSG00000198948|O75121-3|MFAP3L;ENSG00000198948|ENST00000361618|MFAP3L	nc|ENSG00000198948|O75121-3|MFAP3L	nc|ENSG00000198948|O75121-3|MFAP3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.2744750976562	2	625.824421	1249.63429	0.44304	0.00027726	-0.32666	-0.00020443	0.11638	7.2835E-05	625.8242740010703	56.879	0.33511	56.86	56.78	57.115	-0.019077					20	11	2	0	0	0	0.3245	1	13736	13736		17.443	11.251	1	159900			46758	8171	26884	26885	57012	57012					0.01945666331926077
SVYGLELHRDK	11	Unmodified	_SVYGLELHRDK_					0	0	0		SPIN4|p.L167Pfs*2|1|0.05|ENSG00000186767|chrX:63350319-63350320|CA/-|frameshift_variant;SPIN4|p.L167Pfs*82|1|0.06|ENSG00000186767|chrX:63350320-63350321|-/TGGTG|frameshift_variant;ENSG00000186767|ENST00000374884|SPIN4	SPIN4|p.L167Pfs*2|1|0.05|ENSG00000186767|chrX:63350319-63350320|CA/-|frameshift_variant	SPIN4|p.L167Pfs*2|1|0.05|ENSG00000186767|chrX:63350319-63350320|CA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.2530212402344	3	439.570093	1315.68845	-0.30813	-0.00013544	0.26148	0.00011494	-0.046651	-2.0506E-05	439.57023611909204	25.296	0.67263	25.264	24.953	25.626	-0.031408					34	23	2	0	0	0	0.33202	1	3987	3987		5.0475	2.2042	1	85647			46759	7640	26885	26886	57013	57013					0.04323258483486825
SVYGYGVQK	9	Unmodified	_SVYGYGVQK_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2647399902344	2	500.758549	999.502546	0.38964	0.00019512	-0.99835	-0.00049993	-0.60871	-0.00030482	500.75814731336453	30.556	0.92282	30.556	30.309	31.231	0					61	32	4	0	0	0	0.15943	1	5612	5612		39.95	20.693	1	438210			46760	2113	26886	26887	57014	57014					0.002774810348682877
SVYGYGVQK	9	Unmodified	_SVYGYGVQK_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2647399902344	2	500.758549	999.502546	0.37525	0.00018791	-0.6992	-0.00035013	-0.32394	-0.00016222	500.7583069284335	30.567	0.65043	30.595	30.246	30.896	0.027946					51	22	4	0	0	0	0.15943	1	5602	5602		39.95	26.044	1	549570			46761	2113	26886	26887	57015	57015					0.002774810348682877
SVYGYGVQK	9	Unmodified	_SVYGYGVQK_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2646789550781	2	500.758549	999.502546	0.094323	4.7233E-05	-1.1084	-0.00055503	-1.0141	-0.0005078	500.758223029889	30.506	0.44916	30.533	30.335	30.784	0.027157					43	15	4	0	0	0	0.22674	1	5600	5600		22.736	5.6234	1	393640			46762	2113	26886	26887	57016	57016					0.002774810348682877
SVYITLKK	8	Unmodified	_SVYITLKK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.29742431640625	2	476.29731	950.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.59	1	29.603	29.103	30.103	0.012266								0	0	0	0.3293	1	5313	5313		24.021	4.7636	1				46763	4292	26887	26888	57017	57017					0.10280118971036245
SVYITLKK	8	Unmodified	_SVYITLKK_					0	0	0		ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000559475.5_1_15:40329218-40331146:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF	ENSG00000140319|ENST00000267884|SRP14	ENSG00000140319|ENST00000267884|SRP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.2973327636719	2	476.29731	950.580068	0.039234	1.8687E-05	0.017134	8.1609E-06	0.056368	2.6848E-05	476.2973198077355	29.589	0.48995	29.603	29.39	29.88	0.013475					24	16	2	0	0	0	0.31518	1	5325	5325		29.082	9.8246	1	124660			46764	4292	26887	26888	57018	57018					0.10280118971036245
SVYLVVSHF	9	Unmodified	_SVYLVVSHF_					0	0	0			REV__ENST00000534598.5_1_11:124747729-124748095:+|nuORF	REV__ENST00000534598.5_1_11:124747729-124748095:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3054809570312	2	525.784567	1049.55458	0.75507	0.000397	0.15248	8.017E-05	0.90755	0.00047717	525.7845896783506	53.869	0.72725	53.869	53.595	54.322	0					50	26	2	0	0	0	0.21389	1	12882	12882		19.257	0	1	2819500	+		46765	21973	26888	26889	57019	57019					0.031786444485987886
SVYLVVSHF	9	Unmodified	_SVYLVVSHF_					0	0	0			REV__ENST00000534598.5_1_11:124747729-124748095:+|nuORF	REV__ENST00000534598.5_1_11:124747729-124748095:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3056030273438	2	525.784567	1049.55458	0.65643	0.00034514	0.12221	6.4254E-05	0.77864	0.0004094	525.7845934116336	54.042	0.94301	54.026	53.738	54.681	-0.015923					59	33	2	0	0	0	0.1524	1	12990	12990		25.399	0	1	2883600	+		46766	21973	26888	26889	57020	57020					0.031786444485987886
SVYQVIVEEER	11	Unmodified	_SVYQVIVEEER_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7702331542969	3	450.901508	1349.6827	0.56425	0.00025442	4.0065	0.0018065	4.5707	0.002061	450.9030188280092	48.257	0.34321	48.304	48.181	48.524	0.047523					18	12	3	0	0	0	0.3287	1	11069	11069		1.9275	0	1	141190			46767	749	26889	26890	57021	57021					0.02184115181216839
SVYSDFLLY	9	Unmodified	_SVYSDFLLY_					0	0	0		ENSG00000164733|ENST00000353047|CTSB	ENSG00000164733|ENST00000353047|CTSB	ENSG00000164733|ENST00000353047|CTSB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.774169921875	2	553.773865	1105.53318	0.50303	0.00027856	0.50227	0.00027815	1.0053	0.00055671	553.7740188804738	84.56	1.0284	84.547	84.034	85.062	-0.01284					93	42	4	0	0	0	0.088391	1	22138	22138		39.957	15.283	1	452170			46768	5870	26890	26891	57022	57022					-0.015367853707402901
SVYSDFLLYK	10	Unmodified	_SVYSDFLLYK_					0	0	0		ENSG00000164733|ENST00000353047|CTSB	ENSG00000164733|ENST00000353047|CTSB	ENSG00000164733|ENST00000353047|CTSB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.2755737304688	2	617.821347	1233.62814	0.24952	0.00015416	0.50586	0.00031253	0.75538	0.00046669	617.8217611389457	66.812	0.79775	66.812	66.6	67.398	0					73	27	5	0	0	0	0.15401	1	16765	16765		63.227	45.081	1	806890			46769	5870	26891	26892	57023	57023					0.020671481004455927
SVYSDFLLYK	10	Unmodified	_SVYSDFLLYK_					0	0	0		ENSG00000164733|ENST00000353047|CTSB	ENSG00000164733|ENST00000353047|CTSB	ENSG00000164733|ENST00000353047|CTSB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.2753295898438	2	617.821347	1233.62814	0.13402	8.2802E-05	0.56689	0.00035024	0.70092	0.00043304	617.8216772920036	66.657	0.89544	66.741	66.518	67.414	0.083832					70	31	4	0	0	0	0.17942	1	16729	16729		49.527	34.689	1	667420			46770	5870	26891	26892	57024	57024					0.020671481004455927
SVYSDFLLYK	10	Unmodified	_SVYSDFLLYK_					0	0	0		ENSG00000164733|ENST00000353047|CTSB	ENSG00000164733|ENST00000353047|CTSB	ENSG00000164733|ENST00000353047|CTSB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.275634765625	2	617.821347	1233.62814	0.04728	2.9211E-05	0.21673	0.0001339	0.26401	0.00016311	617.8212404217468	66.86	0.9659	66.847	66.46	67.425	-0.013588					83	33	4	0	0	0	0.14128	1	16760	16760		57.249	39.103	1	947290			46771	5870	26891	26892	57025	57025					0.020671481004455927
SVYSETSNMDK	11	Oxidation (M)	_SVYSETSNM(Oxidation (M))DK_		SVYSETSNM(1)DK		SVYSETSNM(46)DK	0	0	1		ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP;GSAP|p.N794Kfs*6|1|0.07|ENSG00000186088|chr7:77311932-77311933|-/GTAGACCC|frameshift_variant;ENSG00000186088|ENST00000257626|GSAP;ENST00000434084.1_1_7:76980937-76984589:-|nuORF	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.7714233398438	2	638.771725	1275.5289	0.22069	0.00014097	0.10615	6.7806E-05	0.32684	0.00020878	638.7718134631302	19.596	0.5829	19.596	19.35	19.933	0					50	20	3	0	0	0	0.074971	1	2270	2270		46.022	33.782	1	160670			46772	7586	26892	26893	57026	57026		837			-0.09784662646643483
SVYSETSNMDK	11	Oxidation (M)	_SVYSETSNM(Oxidation (M))DK_		SVYSETSNM(1)DK		SVYSETSNM(45)DK	0	0	1		ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP;GSAP|p.N794Kfs*6|1|0.07|ENSG00000186088|chr7:77311932-77311933|-/GTAGACCC|frameshift_variant;ENSG00000186088|ENST00000257626|GSAP;ENST00000434084.1_1_7:76980937-76984589:-|nuORF	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.7717895507812	2	638.771725	1275.5289	0.54568	0.00034857	0.016879	1.0782E-05	0.56256	0.00035935	638.7716975432458	19.779	0.63498	19.663	19.433	20.068	-0.11592					48	21	3	0	0	0	0.078698	1	2368	2368		44.945	32.704	1	173950			46773	7586	26892	26893	57027	57027		837			-0.09784662646643483
SVYSETSNMDK	11	Oxidation (M)	_SVYSETSNM(Oxidation (M))DK_		SVYSETSNM(1)DK		SVYSETSNM(49)DK	0	0	1		ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP;GSAP|p.N794Kfs*6|1|0.07|ENSG00000186088|chr7:77311932-77311933|-/GTAGACCC|frameshift_variant;ENSG00000186088|ENST00000257626|GSAP;ENST00000434084.1_1_7:76980937-76984589:-|nuORF	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.7720336914062	2	638.771725	1275.5289	0.6272	0.00040064	-0.025695	-1.6413E-05	0.60151	0.00038423	638.7716171235115	19.678	0.55779	19.623	19.395	19.953	-0.055691					48	19	3	0	0	0	0.066191	1	2292	2292		48.561	36.32	1	166940			46774	7586	26892	26893	57028	57028		837			-0.09784662646643483
SVYSETVDLIK	11	Unmodified	_SVYSETVDLIK_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.3349609375	2	627.334818	1252.65508	0.38486	0.00024144	0.0046834	2.9381E-06	0.38954	0.00024438	627.3347668179869	58.879	0.70983	58.879	58.531	59.241	0					65	24	4	0	0	0	0.007529	1	14270	14270		128.58	102.31	1	1554000			46775	6639	26893	26894	57029	57029					0.03886211920939786
SVYSETVDLIK	11	Unmodified	_SVYSETVDLIK_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.3351440429688	2	627.334818	1252.65508	0.1245	7.8102E-05	0.092835	5.8239E-05	0.21733	0.00013634	627.3348979130334	58.673	0.63123	58.765	58.446	59.077	0.091305					55	21	3	0	0	0	0.0068652	1	14253	14253		132.22	111.81	1	1444500			46776	6639	26893	26894	57030	57030					0.03886211920939786
SVYSETVDLIK	11	Unmodified	_SVYSETVDLIK_					0	0	0		nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1	nc|ENSG00000172493|P51825|AFF1	nc|ENSG00000172493|P51825|AFF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	627.334818	1252.65508	0.30085	0.00018874	0.1382	8.6696E-05	0.43905	0.00027543	627.334851746658	58.991	0.71438	58.977	58.712	59.427	-0.014271	0.10313	6.5912E-05	NaN	132.22	68	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1662700			46777	6639	26893	26894							0.03886211920939786
SVYSPSGPVNR	11	Unmodified	_SVYSPSGPVNR_					0	0	0		nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.795166015625	2	581.796195	1161.57784	0.36282	0.00021109	-0.39531	-0.00022999	-0.03249	-1.8902E-05	581.796017565445	30.288	0.42105	30.316	30.159	30.58	0.027946					22	14	2	0	0	0	0.25774	1	5548	5548		26.021	3.2844	1	97758			46778	7979	26894	26895	57031	57031					0.0035103849527331477
SVYSPSGPVNR	11	Unmodified	_SVYSPSGPVNR_					0	0	0		nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	581.796195	1161.57784	0.37161	0.0002162	0.61201	0.00035607	0.98362	0.00057227	581.7960157303472	30.214	0.4369	30.214	30.088	30.525	0	-0.049133	0.00046778	NaN	26.021	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79291			46779	7979	26894	26895							0.0035103849527331477
SVYSPSGPVNR	11	Unmodified	_SVYSPSGPVNR_					0	0	0		nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	581.796195	1161.57784	-0.0031864	-1.8538E-06	0.31772	0.00018485	0.31453	0.00018299	581.7963521131201	30.231	0.39466	30.259	30.16	30.555	0.027157	-0.0040289	0.00012534	NaN	26.021	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110050			46780	7979	26894	26895							0.0035103849527331477
SVYTSLHT	8	Unmodified	_SVYTSLHT_					0	0	0		ENST00000295888.8_1_4:85593896-85594004:-|nuORF	ENST00000295888.8_1_4:85593896-85594004:-|nuORF	ENST00000295888.8_1_4:85593896-85594004:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.7480163574219	2	454.229625	906.444697	-0.033685	-1.5301E-05	3.522	0.0015998	3.4883	0.0015845	454.2313171810495	15.715	0.20574	15.605	15.517	15.723	-0.10981					9	6	2	0	0	0	0.34337	1	1117	1117		5.2307	0.47466	1	28776			46781	9176	26895	26896	57032	57032					-0.012267808905903621
SVYVLVRQK	9	Unmodified	_SVYVLVRQK_					0	0	0		ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.3322143554688	2	546.332216	1090.64988	0.49056	0.00026801	0.031988	1.7476E-05	0.52254	0.00028548	546.331947196267	30.526	0.69622	30.526	30.282	30.979	0					58	24	3	0	0	0	0.00070271	1	5589	5589		126.57	80.545	1	758920			46782	7982	26896	26897	57033	57033					0.10817997639651367
SVYVLVRQK	9	Unmodified	_SVYVLVRQK_					0	0	0		ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.3321533203125	2	546.332216	1090.64988	0.60933	0.0003329	-0.0079139	-4.3236E-06	0.60142	0.00032858	546.3319316105922	30.51	0.71106	30.538	30.298	31.009	0.027948					62	24	4	0	0	0	9.2305E-05	1	5585	5585		142.08	80.722	1	807980			46783	7982	26896	26897	57034	57034					0.10817997639651367
SVYVLVRQK	9	Unmodified	_SVYVLVRQK_					0	0	0		ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	ENSG00000197601|ENST00000354817|FAR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.3323974609375	2	546.332216	1090.64988	0.32001	0.00017483	0.30281	0.00016544	0.62283	0.00034027	546.3320358147499	30.503	0.80658	30.53	30.25	31.056	0.027157					62	28	4	0	0	0	6.1526E-05	1	5577	5577		147.06	85.702	1	782310			46784	7982	26896	26897	57035	57035					0.10817997639651367
SVYVYKVLK	9	Unmodified	_SVYVYKVLK_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	ENSG00000185130|ENST00000377401|H2BC13;ENSG00000197903|ENST00000356950|H2BC12	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.83154296875	2	549.831517	1097.64848	0.57524	0.00031628	-0.36093	-0.00019845	0.21431	0.00011783	549.8312435881454	37.805	1.0155	37.805	37.503	38.518	0					105	35	5	0	0	0	0.0028542	2	7841	7841;7892		103.42	63.47	1	3587300			46785	7510;8012	26897	26898	57036;57037	57036					0.10356363550886272
SVYVYKVLK	9	Unmodified	_SVYVYKVLK_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	ENSG00000185130|ENST00000377401|H2BC13;ENSG00000197903|ENST00000356950|H2BC12	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.8316040039062	2	549.831517	1097.64848	0.52613	0.00028928	-0.27546	-0.00015146	0.25067	0.00013783	549.8312750271857	37.697	1.1191	37.788	37.501	38.62	0.090881					117	40	5	0	0	0	0.0041491	1	7822	7822		93.166	60.38	1	3731300			46786	7510;8012	26897	26898	57038	57038					0.10356363550886272
SVYVYKVLK	9	Unmodified	_SVYVYKVLK_					0	0	0		ENSG00000185130|ENST00000377401|H2BC13;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000275713|ENST00000619466|H2BC9;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000234289|ENST00000599962|H2BC12L	ENSG00000185130|ENST00000377401|H2BC13;ENSG00000197903|ENST00000356950|H2BC12	ENSG00000185130|ENST00000377401|H2BC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.8316650390625	2	549.831517	1097.64848	0.42257	0.00023234	-0.21177	-0.00011644	0.21079	0.0001159	549.8313224245528	37.651	1.1157	37.749	37.452	38.568	0.097527					111	40	4	0	0	0	0.0028542	2	7787	7787;7838		103.42	63.47	1	3482200			46787	7510;8012	26897	26898	57039;57040	57039					0.10356363550886272
SVYYNEATGGK	11	Unmodified	_SVYYNEATGGK_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;TUBB|p.M233Cfs*14|1|0.3|ENSG00000196230|chr6:30723759-30723766|ATGAGTGG/-|frameshift_variant	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.7808227539062	2	594.78021	1187.54587	0.3832	0.00022792	0.52482	0.00031215	0.90801	0.00054007	594.7805138530551	27.071	0.56997	27.071	26.871	27.441	0					40	19	3	0	0	0	0.32909	1	4534	4534		10.899	7.3025	1	216760			46788	7841	26898	26899	57041	57041					-0.04040373978523348
SVYYNEATGGK	11	Unmodified	_SVYYNEATGGK_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;TUBB|p.M233Cfs*14|1|0.3|ENSG00000196230|chr6:30723759-30723766|ATGAGTGG/-|frameshift_variant	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7802124023438	2	594.78021	1187.54587	0.34091	0.00020277	0.30039	0.00017867	0.6413	0.00038143	594.7802905655668	27.116	0.5442	27.095	26.867	27.411	-0.021412					47	18	3	0	0	0	0.28064	1	4555	4555		23.964	20.02	1	234140			46789	7841	26898	26899	57042	57042					-0.04040373978523348
SVYYNEATGGK	11	Unmodified	_SVYYNEATGGK_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;TUBB|p.M233Cfs*14|1|0.3|ENSG00000196230|chr6:30723759-30723766|ATGAGTGG/-|frameshift_variant	ENSG00000196230|ENST00000327892|TUBB	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.7806396484375	2	594.78021	1187.54587	0.34892	0.00020753	0.42437	0.0002524	0.77328	0.00045993	594.7803786332353	27.125	0.50307	27.114	26.904	27.407	-0.01156					42	17	3	0	0	0	0.20949	1	4556	4556		30.354	24.623	1	234910			46790	7841	26898	26899	57043	57043					-0.04040373978523348
SWAVPEGFLLA	11	Unmodified	_SWAVPEGFLLA_					0	0	0		ENST00000475627.1_1_6:32920134-32920783:-|nuORF	ENST00000475627.1_1_6:32920134-32920783:-|nuORF	ENST00000475627.1_1_6:32920134-32920783:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.31640625	2	595.316232	1188.61791	0.31318	0.00018644	0.57334	0.00034132	0.88652	0.00052776	595.3163715832695	61.62	0.556	61.62	61.389	61.945	0					45	20	3	0	0	0	0.22366	1	15166	15166		29.082	2.8134	1	589000			46791	10938	26899	26900	57044	57044					0.031145851658720858
SWCRASGL	8	Unmodified	_SWCRASGL_					0	0	0		nc|ENSG00000250486|Q96MZ4|FAM218A	nc|ENSG00000250486|Q96MZ4|FAM218A	nc|ENSG00000250486|Q96MZ4|FAM218A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.1982727050781	2	440.210712	878.406871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.291	1	57.377	56.877	57.877	0.085621								0	0	0	0.36336	1	13813	13813		8.5933	0	1				46792	12974	26900	26901	57045	57045					-0.03719570357031898
SWCSHCYCDC	10	Unmodified	_SWCSHCYCDC_					0	0	0			REV__ENST00000471987.1_1_1:207958419-207959036:+|nuORF	REV__ENST00000471987.1_1_1:207958419-207959036:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.6805419921875	2	603.677204	1205.33986	0.014828	8.9511E-06	4.1908	0.0025299	4.2056	0.0025388	603.6807116679817	14.343	0.46406	14.277	14.124	14.588	-0.066067					41	16	4	0	0	0	0.41673	1	692	692		0.40072	0.050084	1	138900	+		46793	20303	26901	26902	57046	57046					-0.25460053016945494
SWCVSVFFPA	10	Unmodified	_SWCVSVFFPA_					0	0	0		ENSG00000212127|ENST00000537503|TAS2R14	ENSG00000212127|ENST00000537503|TAS2R14	ENSG00000212127|ENST00000537503|TAS2R14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7723999023438	2	571.770603	1141.52665	0.21911	0.00012528	1.7723	0.0010133	1.9914	0.0011386	571.7711631668208	80.373	2.5866	80.373	79.495	82.081	0					162	107	3	0	0	0	0.38233	1	20784	20784		6.7232	0.99131	1	475580			46794	8329	26902	26903	57047	57047					-0.03845001803119885
SWEKAFKTSF	10	Unmodified	_SWEKAFKTSF_					0	0	0		nc|ENSG00000147121|Q5JUW0-2|KRBOX4;ENSG00000147121|ENST00000344302|KRBOX4	nc|ENSG00000147121|Q5JUW0-2|KRBOX4	nc|ENSG00000147121|Q5JUW0-2|KRBOX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.8765869140625	3	410.876634	1229.60807	0.18037	7.4109E-05	-0.53391	-0.00021937	-0.35354	-0.00014526	410.87643985651613	66.491	0.97397	66.575	66.274	67.248	0.083824					67	34	4	0	0	0	0.38952	1	16697	16697		5.4027	1.8157	1	546820			46795	4746	26903	26904	57048	57048					0.002453971604609251
SWEYPSGHF	9	Unmodified	_SWEYPSGHF_					0	0	0			REV__nc|ENSG00000189013|Q99706-5|KIR2DL4	REV__nc|ENSG00000189013|Q99706-5|KIR2DL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2379760742188	2	555.237981	1108.46141	0.41061	0.00022799	-0.58369	-0.00032409	-0.17308	-9.6101E-05	555.2376906185038	55.32	0.48326	55.301	55.025	55.508	-0.019077					30	17	2	0	0	0	0.27532	1	13203	13203		12.532	1.0368	1	528780	+		46796	18591	26904	26905	57049	57049					-0.08848280004622211
SWFLYIIF	8	Unmodified	_SWFLYIIF_					0	0	0		ENST00000465475.5_1_3:124802831-124839525:-|nuORF;nc|ENSG00000221955|A0AV02-4|SLC12A8;ENST00000479352.5_1_3:124802736-124844777:-|nuORF;nc|ENSG00000221955|A0AV02-3|SLC12A8;ENSG00000221955|ENST00000469902|SLC12A8;nc|ENSG00000221955|A0AV02-2|SLC12A8	ENST00000465475.5_1_3:124802831-124839525:-|nuORF	ENST00000465475.5_1_3:124802831-124839525:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7920532226562	2	544.794404	1087.57425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.21	1	112.19	111.69	112.69	-0.015625								0	0	0	0.3683	1	29188	29188		6.3541	1.1234	1				46797	8428	26905	26906	57050	57050					0.03397020459374289
SWIDTKNNYPK	11	Unmodified	_SWIDTKNNYPK_					0	0	0			REV__nc|ENSG00000197168|Q6P3R8|NEK5	REV__nc|ENSG00000197168|Q6P3R8|NEK5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2922058105469	3	455.898098	1364.67246	0.30151	0.00013746	0.48542	0.0002213	0.78694	0.00035876	456.2331075068451	40.253	0.19331	40.352	40.26	40.453	0.099407					9	6	2	0	0	0	0.3325	1	8578	8578		4.1166	0	1	96992	+		46798	18717	26906	26907	57051	57051					0.004715522466085531
SWIQVWTLFWE	11	Unmodified	_SWIQVWTLFWE_					0	0	0		ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3101501464844	3	498.918722	1493.73434	0.35352	0.00017638	0.6832	0.00034086	1.0367	0.00051724	499.2529056106555	91.311	1.2295	91.311	91.124	92.353	0					128	88	2	0	0	0	0.33347	1	24283	24283		0.45452	0	1	485470			46799	7603	26907	26908	57052	57052					0.007219036657488687
SWKKTQDESF	10	Unmodified	_SWKKTQDESF_					0	0	0		L1MB1_dup3824|chr10:14797831-14799057:+|9.611679498270464|0.0107134799405193|9.81|524.0|12|2|sense	L1MB1_dup3824|chr10:14797831-14799057:+|9.611679498270464|0.0107134799405193|9.81|524.0|12|2|sense	L1MB1_dup3824|chr10:14797831-14799057:+|9.611679498270464|0.0107134799405193|9.81|524.0|12|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.2035827636719	3	419.203299	1254.58807	0.6064	0.00025421	-0.1255	-5.261E-05	0.4809	0.0002016	419.2032741998733	56.085	1.3553	56.085	55.682	57.038	0					126	49	4	0	0	0	0.3258	1	13427	13427		10.899	3.8619	1	7872100			46800	12446	26908	26909	57053	57053					-0.029043985701491692
SWKKTQDESF	10	Unmodified	_SWKKTQDESF_					0	0	0		L1MB1_dup3824|chr10:14797831-14799057:+|9.611679498270464|0.0107134799405193|9.81|524.0|12|2|sense	L1MB1_dup3824|chr10:14797831-14799057:+|9.611679498270464|0.0107134799405193|9.81|524.0|12|2|sense	L1MB1_dup3824|chr10:14797831-14799057:+|9.611679498270464|0.0107134799405193|9.81|524.0|12|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.2034606933594	3	419.203299	1254.58807	0.62116	0.00026039	-0.12231	-5.1272E-05	0.49886	0.00020912	419.20328645085715	56.029	1.119	56.1	55.675	56.794	0.070885					114	41	4	0	0	0	0.35231	1	13400	13400		7.4771	2.2786	1	8367100			46801	12446	26908	26909	57054	57054					-0.029043985701491692
SWLKICSNDF	10	Unmodified	_SWLKICSNDF_					0	0	0			REV__nc|ENSG00000135801|O75529-2|TAF5L	REV__nc|ENSG00000135801|O75529-2|TAF5L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.8625793457031	3	404.862108	1211.56449	0.10716	4.3385E-05	1.0557	0.0004274	1.1628	0.00047079	404.86261724924884	58.683	0.67136	58.669	58.386	59.058	-0.014267					64	23	4	0	0	0	0.39145	1	14253	14253		5.0475	1.1712	1	456920	+		46802	15764	26909	26910	57055	57055					-0.03282535608332182
SWNGLKTCEI	10	Unmodified	_SWNGLKTCEI_					0	0	0			REV__ENSG00000091583|ENST00000205948|APOH	REV__ENSG00000091583|ENST00000205948|APOH	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7908325195312	2	575.781699	1149.54884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.973	1	75.941	75.441	76.441	-0.031487								0	0	0	0.34683	1	19531	19531		16.149	2.2431	1		+		46803	14067	26910	26911	57056	57056					-0.01994822125357132
SWNNKITIL	9	Unmodified	_SWNNKITIL_					0	0	0		ENST00000423620.6_1_8:95718261-95718693:+|nuORF	ENST00000423620.6_1_8:95718261-95718693:+|nuORF	ENST00000423620.6_1_8:95718261-95718693:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7926635742188	2	544.808574	1087.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.517	1	62.509	62.009	63.009	-0.0085526								0	0	0	0.22377	1	15418	15418		14.838	0.25658	1				46804	10388	26911	26912	57057	57057					0.062297183686723656
SWQQRWRP	8	Unmodified	_SWQQRWRP_					0	0	0			REV__nc|ENSG00000004468|P28907-2|CD38	REV__nc|ENSG00000004468|P28907-2|CD38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2936401367188	2	572.293956	1142.57336	0.063355	3.6258E-05	0.41821	0.00023934	0.48157	0.0002756	572.2942246656602	12.575	0.19622	12.478	12.384	12.58	-0.096607					11	6	2	0	0	0	0.46092	1	193	193		2.0598	0	1	55368	+		46805	13330	26912	26913	57058	57058					0.0077761886302596395
SWQYAEVK	8	Unmodified	_SWQYAEVK_					0	0	0			REV__ENSG00000137055|ENST00000397292|PLAA	REV__ENSG00000137055|ENST00000397292|PLAA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.74322509765625	2	505.750724	1009.4869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.896	1	27.892	27.392	28.392	-0.0042572								0	0	0	0.29891	1	4798	4798		29.082	7.3349	1		+		46806	15842	26913	26914	57059	57059					-0.017468054821961232
SWREPAPRC	9	Unmodified	_SWREPAPRC_					0	0	0		ENST00000264057.6_1_2:234350552-234356938:+|nuORF	ENST00000264057.6_1_2:234350552-234356938:+|nuORF	ENST00000264057.6_1_2:234350552-234356938:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.7816772460938	2	551.26655	1100.51855	1.0051	0.00055407	0.75076	0.00041387	1.7558	0.00096794	551.2669334146187	56.285	0.54739	56.266	56.021	56.568	-0.019077					39	19	3	0	0	0	0.25989	1	13464	13464		14.838	3.7238	1	2521200			46807	9022	26914	26915	57060	57060					-0.02769135999892569
SWREPAPRC	9	Unmodified	_SWREPAPRC_					0	0	0		ENST00000264057.6_1_2:234350552-234356938:+|nuORF	ENST00000264057.6_1_2:234350552-234356938:+|nuORF	ENST00000264057.6_1_2:234350552-234356938:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	551.26655	1100.51855	1.0529	0.00058045	0.60321	0.00033253	1.6561	0.00091298	551.2665891941854	56.131	0.48929	56.131	55.854	56.344	0	-0.039137	-8.0779E-05	NaN	14.838	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1599500			46808	9022	26914	26915							-0.02769135999892569
SWREPAPRC	9	Unmodified	_SWREPAPRC_					0	0	0		ENST00000264057.6_1_2:234350552-234356938:+|nuORF	ENST00000264057.6_1_2:234350552-234356938:+|nuORF	ENST00000264057.6_1_2:234350552-234356938:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	551.26655	1100.51855	1.0051	0.00055407	0.75076	0.00041387	1.7558	0.00096794	551.2669334146187	56.285	0.54739	56.266	56.021	56.568	-0.019077	0.095215	8.1905E-05	NaN	14.838	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2521200			46809	9022	26914	26915							-0.02769135999892569
SWRKISLIWA	10	Unmodified	_SWRKISLIWA_					0	0	0			REV__ENST00000529611.5_1_11:82985776-82989818:-|nuORF	REV__ENST00000529611.5_1_11:82985776-82989818:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.5902099609375	3	420.580152	1258.71863	-0.43229	-0.00018181	-2.354	-0.00099006	-2.7863	-0.0011719	420.9139842782249	28.102	0.25991	28.102	27.981	28.241	0					10	8	2	0	0	0	0.31969	1	4839	4839		5.7834	0.73591	1	35208	+		46810	21997	26915	26916	57061	57061					0.09961661939382793
SWRVQGIPF	9	Unmodified	_SWRVQGIPF_					0	0	0			REV__ENST00000575300.1_1_16:4312060-4322792:-|nuORF	REV__ENST00000575300.1_1_16:4312060-4322792:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.821533203125	2	545.295633	1088.57671	0.61246	0.00033397	-1.6189	-0.00088277	-1.0064	-0.00054879	545.2947514608936	59.378	1.2365	59.47	58.474	59.71	0.091301					77	43	2	0	0	0	0.25066	1	14225	14225		11.64	0.81637	1	705310	+		46811	22441	26916	26917	57062	57062					0.03596868917043139
SWRVQGIPF	9	Unmodified	_SWRVQGIPF_					0	0	0			REV__ENST00000575300.1_1_16:4312060-4322792:-|nuORF	REV__ENST00000575300.1_1_16:4312060-4322792:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.827880859375	2	545.295633	1088.57671	0.69758	0.00038039	-3.3487	-0.001826	-2.6511	-0.0014456	545.2944484099194	71.023	0.57062	70.998	70.773	71.344	-0.024872					29	20	2	0	0	0	0.20651	1	17966	17966		20.454	0	1	317470	+		46812	22441	26916	26917	57063	57063					0.03596868917043139
SWVLVEISL	9	Unmodified	_SWVLVEISL_					0	0	0			REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3032836914062	2	523.30005	1044.58555	0.64154	0.00033572	0.69761	0.00036506	1.3392	0.00070078	523.3003679395734	87.623	1.6623	87.623	86.883	88.545	0					198	80	4	0	0	0	0.29176	1	22983	22983		10.074	2.465	1	2504400	+		46813	23062	26917	26918	57064	57064					0.06503797762843533
SWWALRPCRPQ	11	Unmodified	_SWWALRPCRPQ_					0	0	0		nc|ENSG00000241553|P59998-2|ARPC4;nc|ENSG00000214021|Q9Y4R7-2|TTLL3;ENST00000427220.5_1_3:9860474-9876502:+|nuORF;ENST00000443148.5_1_3:9874920-9876502:+|nuORF;ENST00000496526.5_1_3:9870593-9876502:+|nuORF;nc|ENSG00000214021|Q9Y4R7-6|TTLL3;ENST00000473661.5_1_3:9867594-9876502:+|nuORF	nc|ENSG00000241553|P59998-2|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2445983886719	3	467.239913	1398.69791	-0.086121	-4.0239E-05	-1.4734	-0.00068843	-1.5595	-0.00072867	467.238960860729	25.305	0.8929	25.305	24.93	25.823	0					83	30	4	0	0	0	0.33146	1	3903	3903		6.6235	6.1175	1	497670			46814	12965	26918	26919	57065	57065					0.014507482880389944
SWYNMGLAF	9	Unmodified	_SWYNMGLAF_					0	0	0			REV__ENSG00000072080|ENST00000168148|SPP2	REV__ENSG00000072080|ENST00000168148|SPP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3170776367188	2	544.747127	1087.4797	0.72473	0.0003948	-3.2496	-0.0017702	-2.5249	-0.0013754	544.7453352659907	87.262	0.35602	87.256	87.124	87.48	-0.0056229					25	16	2	0	0	0	0.24739	1	23010	23010		8.5933	0.68312	1	76624	+		46815	13753	26919	26920	57066	57066					-0.06053861354280343
SYAAPSLLRS	10	Unmodified	_SYAAPSLLRS_					0	0	0			REV__ENST00000253233.5_1_12:123717554-123717716:+|nuORF	REV__ENST00000253233.5_1_12:123717554-123717716:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7913208007812	2	532.790381	1063.56621	0.2812	0.00014982	-0.23861	-0.00012713	0.04259	2.2692E-05	532.7902827615607	46.222	1.7997	46.282	46.015	47.815	0.059837					119	66	4	0	0	0	0.23397	1	10573	10573		28.495	0	1	5416100	+		46816	19537	26920	26921	57067	57067					0.036968414719467546
SYADAFQFL	9	Unmodified	_SYADAFQFL_					0	0	0		ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2509155273438	2	531.250557	1060.48656	0.75628	0.00040178	-0.119	-6.3219E-05	0.63728	0.00033856	531.2504388685248	83.967	1.1805	83.967	83.617	84.798	0					123	45	4	0	0	0	6.1879E-11	4	22008	21968;22008;22056;22098		183.04	111.91	1	6005600			46817	8552	26921	26922	57068;57069;57070;57071	57069					-0.04126225202048772
SYADAFQFL	9	Unmodified	_SYADAFQFL_					0	0	0		ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2508544921875	2	531.250557	1060.48656	0.5726	0.00030419	0.011793	6.2649E-06	0.58439	0.00031046	531.2505147111376	83.875	1.2331	83.952	83.594	84.827	0.077095					134	49	4	0	0	0	2.942E-07	5	21928	21883;21928;21973;22020;22070		168.66	107.3	1	5326200			46818	8552	26921	26922	57072;57073;57074;57075;57076	57073					-0.04126225202048772
SYADAFQFL	9	Unmodified	_SYADAFQFL_					0	0	0		ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2509155273438	2	531.250557	1060.48656	0.6868	0.00036486	-0.042904	-2.2793E-05	0.6439	0.00034207	531.2504583051879	83.964	1.1275	83.947	83.607	84.734	-0.016823					144	49	4	0	0	0	6.1879E-11	5	21959	21915;21959;22001;22049;22102		183.04	121.68	1	6322900			46819	8552	26921	26922	57077;57078;57079;57080;57081	57078					-0.04126225202048772
SYADAFQFL	9	Unmodified	_SYADAFQFL_					0	0	0		ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	ENSG00000242732|ENST00000609883|RTL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3187255859375	2	531.250557	1060.48656	0.69305	0.00036818	0.40859	0.00021707	1.1016	0.00058525	531.2513727788502	84.884	0.3763	84.871	84.71	85.087	-0.01284					18	15	2	0	0	0	0.22674	1	22212	22212		22.736	9.6938	1	101160			46820	8552	26921	26922	57082	57082					-0.04126225202048772
SYADNILSF	9	Unmodified	_SYADNILSF_					0	0	0		ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2479248046875	2	515.248015	1028.48148	0.24916	0.00012838	0.15362	7.9151E-05	0.40278	0.00020753	515.247904187993	75.394	1.1508	75.394	75.069	76.22	0					90	41	4	0	0	0	1.5658E-06	1	19393	19393		173.69	51.507	1	1771500			46821	2925	26922	26923	57083	57083					-0.03162529064661612
SYADNILSF	9	Unmodified	_SYADNILSF_					0	0	0		ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2479248046875	2	515.248015	1028.48148	0.28467	0.00014667	0.13684	7.0507E-05	0.42151	0.00021718	515.2479134686076	75.353	1.0318	75.406	75.102	76.134	0.052361					91	37	4	0	0	0	5.5754E-11	2	19361	19317;19361		185.05	50.015	1	1844700			46822	2925	26922	26923	57084;57085	57085					-0.03162529064661612
SYADNILSF	9	Unmodified	_SYADNILSF_					0	0	0		ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	ENSG00000120008|ENST00000263461|WDR11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2479858398438	2	515.248015	1028.48148	0.35374	0.00018227	0.069246	3.5679E-05	0.42299	0.00021794	515.2478603050926	75.433	0.77165	75.402	75.109	75.881	-0.031487					75	28	4	0	0	0	7.3453E-05	1	19386	19386		145.13	34.455	1	1974900			46823	2925	26922	26923	57086	57086					-0.03162529064661612
SYADQMFLL	9	Oxidation (M)	_SYADQM(Oxidation (M))FLL_		SYADQM(1)FLL		SYADQM(180)FLL	0	0	1		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2577514648438	2	552.257525	1102.5005	0.38028	0.00021001	-0.60501	-0.00033412	-0.22473	-0.00012411	552.2578616112352	70.793	2.2153	70.793	70.24	72.456	0					247	79	6	0	0	0	6.1879E-11	9	17899	17856;17899;17949;18000;18043;18088;18138;18193;18246		183.04	130.77	1	37195000			46824	1654	26923	26924	57087;57088;57089;57090;57091;57092;57093;57094;57095	57088		202			-0.04665315765282685
SYADQMFLL	9	Oxidation (M)	_SYADQM(Oxidation (M))FLL_		SYADQM(1)FLL		SYADQM(46)FLL	0	0	1		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.749267578125	2	552.257525	1102.5005	0.16626	9.182E-05	2.7171	0.0015005	2.8834	0.0015924	552.2572170467373	73.869	1.4407	73.869	72.75	74.191	0					89	50	4	0	0	0	0.11018	1	18672	18672		45.74	24.869	1	287130			46825	1654	26923	26924	57096	57096		202			-0.04665315765282685
SYADQMFLL	9	Oxidation (M)	_SYADQM(Oxidation (M))FLL_		SYADQM(1)FLL		SYADQM(160)FLL	0	0	1		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2578125	2	552.257525	1102.5005	0.40567	0.00022404	-0.69275	-0.00038258	-0.28707	-0.00015854	552.2577974059826	70.773	2.6313	70.834	70.299	72.93	0.060776					260	95	6	0	0	0	1.2283E-05	10	17891	17845;17891;17934;17981;18026;18080;18133;18186;18235;18303		155.03	111.17	1	38180000			46826	1654	26923	26924	57097;57098;57099;57100;57101;57102;57103;57104;57105;57106	57098		202			-0.04665315765282685
SYADQMFLL	9	Oxidation (M)	_SYADQM(Oxidation (M))FLL_		SYADQM(1)FLL		SYADQM(180)FLL	0	0	1		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2576904296875	2	552.257525	1102.5005	0.43537	0.00024044	-0.74441	-0.00041111	-0.30904	-0.00017067	552.2577599625823	70.818	2.8046	70.793	70.301	73.105	-0.024864					289	100	6	0	0	0	6.1879E-11	9	17896	17847;17896;17944;17989;18030;18074;18124;18174;18243		183.04	130.77	1	37297000			46827	1654	26923	26924	57107;57108;57109;57110;57111;57112;57113;57114;57115	57108		202			-0.04665315765282685
SYAEIEQTI	9	Unmodified	_SYAEIEQTI_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-7|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2586669921875	2	527.258579	1052.50261	0.47443	0.00025015	-0.15078	-7.9502E-05	0.32365	0.00017065	527.2583340971656	55.403	0.93096	55.403	55.061	55.992	0					83	33	4	0	0	0	5.4053E-05	2	13224	13176;13224		148.27	80.187	1	2131000			46828	4644	26924	26925	57116;57117	57117					-0.021545637557892405
SYAEIEQTI	9	Unmodified	_SYAEIEQTI_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-7|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2586059570312	2	527.258579	1052.50261	0.6573	0.00034657	-0.18226	-9.61E-05	0.47504	0.00025047	527.2582621979552	55.341	0.90305	55.411	55.055	55.958	0.070885					82	33	4	0	0	0	0.00012746	2	13155	13155;13202		136.39	77.713	1	1974000			46829	4644	26924	26925	57118;57119	57118					-0.021545637557892405
SYAEIEQTI	9	Unmodified	_SYAEIEQTI_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-7|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2589111328125	2	527.258579	1052.50261	0.52422	0.0002764	-0.3984	-0.00021006	0.12581	6.6337E-05	527.258245894286	55.555	0.95202	55.535	55.181	56.133	-0.019081					79	34	4	0	0	0	0.00012746	2	13222	13222;13275		136.39	77.713	1	2497400			46830	4644	26924	26925	57120;57121	57120					-0.021545637557892405
SYAHLDDIL	9	Unmodified	_SYAHLDDIL_					0	0	0		nc|ENSG00000130052|Q92502|STARD8;ENSG00000130052|ENST00000374599|STARD8	nc|ENSG00000130052|Q92502|STARD8	nc|ENSG00000130052|Q92502|STARD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.307861328125	2	523.761289	1045.50803	0.67308	0.00035253	-0.4449	-0.00023302	0.22818	0.00011951	524.2616661488364	84.855	0.069733	84.936	84.885	84.954	0.080887					4	2	2	0	0	0	0.2451	1	22253	22253		15.847	3.3156	1	34392			46831	3449	26925	26926	57122	57122					-0.01290840173351171
SYAKCIATIF	10	Unmodified	_SYAKCIATIF_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-6|MON2	REV__nc|ENSG00000061987|Q7Z3U7-6|MON2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.7843017578125	2	558.791535	1115.56852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.384	1	84.384	83.884	84.884	0								0	0	0	0.34994	1	22118	22118		14.838	0.93222	1		+		46832	22890	26926	26927	57123	57123					0.015355538853782491
SYAKLVFMS	9	Unmodified	_SYAKLVFMS_					0	0	0		ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2552490234375	2	523.272978	1044.5314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.575	1	72.629	72.129	73.129	0.053833								0	0	0	0.23367	1	18499	18499		11.64	0	1				46833	4294	26927	26928	57124	57124					0.01091882339642325
SYAKSTQRF	9	Unmodified	_SYAKSTQRF_					0	0	0		ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2802124023438	2	544.28018	1086.54581	0.32042	0.0001744	-0.053276	-2.8997E-05	0.26715	0.0001454	544.2800481107291	18.426	0.76521	18.426	18.158	18.923	0					70	26	4	0	0	0	0.072885	3	1942	1889;1942;1991		44.392	27.45	1	538490			46834	10468	26928	26929	57125;57126;57127	57126					0.005996708121301708
SYAKSTQRF	9	Unmodified	_SYAKSTQRF_					0	0	0		ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2802124023438	2	544.28018	1086.54581	0.39905	0.0002172	-0.042989	-2.3398E-05	0.35606	0.0001938	544.280008814224	18.586	0.73035	18.469	18.215	18.946	-0.11739					72	25	4	0	0	0	0.022205	3	2004	1956;2004;2053		63.227	37.828	1	485970			46835	10468	26928	26929	57128;57129;57130	57129					0.005996708121301708
SYAKSTQRF	9	Unmodified	_SYAKSTQRF_					0	0	0		ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2804565429688	2	544.28018	1086.54581	0.23698	0.00012898	0.050208	2.7327E-05	0.28719	0.00015631	544.2801100492198	18.615	0.61567	18.557	18.313	18.929	-0.058174					57	21	3	0	0	0	0.033439	2	1956	1956;2005		59.052	39.795	1	555140			46836	10468	26928	26929	57131;57132	57131					0.005996708121301708
SYAMQVNQPL	10	Unmodified	_SYAMQVNQPL_					0	0	0		ENST00000540175.1_1_12:20704556-20705942:+|nuORF;ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENST00000540175.1_1_12:20704556-20705942:+|nuORF	ENST00000540175.1_1_12:20704556-20705942:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.843017578125	2	575.781699	1149.54884	0.19999	0.00011515	-0.21632	-0.00012455	-0.016331	-9.4032E-06	576.283037993077	81.338	0.35191	81.338	81.256	81.608	0					17	15	2	0	0	0	0.31745	1	21188	21188		5.2969	0	1	73557			46837	8722	26929	26930	57133	57133					-0.01994822125357132
SYANVQDGF	9	Unmodified	_SYANVQDGF_					0	0	0		ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7222900390625	2	500.722164	999.429775	0.49026	0.00024548	-0.45276	-0.00022671	0.037495	1.8775E-05	500.7218858280915	48.596	0.74865	48.596	48.386	49.135	0					59	26	3	0	0	0	8.0996E-05	2	11121	11121;11171		143.91	85.23	1	1700700			46838	5039	26930	26931	57134;57135	57134					-0.06996272758567557
SYANVQDGF	9	Unmodified	_SYANVQDGF_					0	0	0		ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7225341796875	2	500.722164	999.429775	0.6175	0.0003092	-0.52602	-0.00026339	0.091485	4.5808E-05	500.7218904275652	48.651	0.65276	48.696	48.363	49.016	0.044891					55	23	3	0	0	0	0.00051734	2	11110	11110;11163		128.93	78.077	1	1866200			46839	5039	26930	26931	57136;57137	57136					-0.06996272758567557
SYANVQDGF	9	Unmodified	_SYANVQDGF_					0	0	0		ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7222595214844	2	500.722164	999.429775	0.47972	0.00024021	-0.43499	-0.00021781	0.044735	2.24E-05	500.72191550012235	48.486	0.54559	48.53	48.294	48.839	0.04332					47	19	3	0	0	0	6.549E-06	2	11075	11075;11123		155.95	106.02	1	1669400			46840	5039	26930	26931	57138;57139	57138					-0.06996272758567557
SYANYFIRL	9	Unmodified	_SYANYFIRL_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.8009033203125	2	573.800749	1145.58694	0.3088	0.00017719	-0.0021175	-1.215E-06	0.30669	0.00017598	573.800719275586	66.601	1.0961	66.601	66.183	67.279	0					71	38	3	0	0	0	2.32E-07	2	16672	16672;16725		171.09	121.15	1	839040			46841	1530	26931	26932	57140;57141	57140					0.01997431851600595
SYANYFIRL	9	Unmodified	_SYANYFIRL_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.801025390625	2	573.800749	1145.58694	0.39941	0.00022918	-0.044411	-2.5483E-05	0.355	0.0002037	573.80073558582	66.465	0.93584	66.549	66.192	67.128	0.083832					76	33	3	0	0	0	2.32E-07	2	16615	16615;16674		171.09	117.68	1	810380			46842	1530	26931	26932	57142;57143	57142					0.01997431851600595
SYANYFIRL	9	Unmodified	_SYANYFIRL_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.8010864257812	2	573.800749	1145.58694	0.15109	8.6696E-05	0.24967	0.00014326	0.40076	0.00022996	573.800776935566	66.599	0.96182	66.585	66.222	67.184	-0.013588					76	34	3	0	0	0	2.32E-07	2	16654	16654;16711		171.09	121.15	1	956920			46843	1530	26931	26932	57144;57145	57144					0.01997431851600595
SYAQGFMLL	9	Oxidation (M)	_SYAQGFM(Oxidation (M))LL_		SYAQGFM(1)LL		SYAQGFM(140)LL	0	0	1		nc|ENSG00000142657|P52209-2|PGD;ENSG00000142657|ENST00000270776|PGD	nc|ENSG00000142657|P52209-2|PGD	nc|ENSG00000142657|P52209-2|PGD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2549438476562	2	523.254785	1044.49502	0.57791	0.0003024	0.38266	0.00020023	0.96057	0.00050263	523.2548267598985	72.532	0.77375	72.532	72.215	72.989	0					72	28	4	0	0	0	0.00011048	2	18464	18464;18512		139.14	77.781	1	978160			46844	4457	26932	26933	57146;57147	57146		563			-0.02544994557069913
SYAQGFMLL	9	Oxidation (M)	_SYAQGFM(Oxidation (M))LL_		SYAQGFM(1)LL		SYAQGFM(130)LL	0	0	1		nc|ENSG00000142657|P52209-2|PGD;ENSG00000142657|ENST00000270776|PGD	nc|ENSG00000142657|P52209-2|PGD	nc|ENSG00000142657|P52209-2|PGD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.255126953125	2	523.254785	1044.49502	0.58481	0.000306	0.33682	0.00017624	0.92162	0.00048224	523.2547833463117	72.466	0.78067	72.522	72.17	72.951	0.056572					63	28	3	0	0	0	0.00070271	1	18447	18447		126.57	55.432	1	1005500			46845	4457	26932	26933	57148	57148		563			-0.02544994557069913
SYAQGFMLL	9	Oxidation (M)	_SYAQGFM(Oxidation (M))LL_		SYAQGFM(1)LL		SYAQGFM(140)LL	0	0	1		nc|ENSG00000142657|P52209-2|PGD;ENSG00000142657|ENST00000270776|PGD	nc|ENSG00000142657|P52209-2|PGD	nc|ENSG00000142657|P52209-2|PGD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2550048828125	2	523.254785	1044.49502	0.58367	0.00030541	0.42134	0.00022047	1.005	0.00052588	523.2548430068908	72.601	0.69987	72.572	72.254	72.954	-0.029305					70	24	4	0	0	0	0.00011048	2	18468	18468;18517		139.14	77.781	1	909990			46846	4457	26932	26933	57149;57150	57149		563			-0.02544994557069913
SYARHFLDF	9	Unmodified	_SYARHFLDF_					0	0	0		ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.8265380859375	2	578.282723	1154.55089	0.67156	0.00038835	-1.0627	-0.00061452	-0.39111	-0.00022617	578.2820120893845	50.761	0.35493	50.761	50.623	50.978	0					19	12	2	0	0	0	0.21623	1	11814	11814		21.59	5.743	1	186500			46847	7162	26933	26934	57151	57151					-0.020200253252596667
SYARHFLDF	9	Unmodified	_SYARHFLDF_					0	0	0		ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.8267211914062	2	578.282723	1154.55089	0.69928	0.00040438	-1.287	-0.00074426	-0.58774	-0.00033988	578.2820075961262	50.79	0.32934	50.837	50.656	50.985	0.046574					16	11	2	0	0	0	0.23235	1	11815	11815		21.537	6.6987	1	205290			46848	7162	26933	26934	57152	57152					-0.020200253252596667
SYARHFLDF	9	Unmodified	_SYARHFLDF_					0	0	0		ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	ENSG00000180011|ENST00000322342|PTGR3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	578.282723	1154.55089	0.58322	0.00033727	-0.0773	-4.4701E-05	0.50592	0.00029257	578.2826519049603	50.973	0.416	50.982	50.729	51.145	0.0095673	0.12209	0.001071	NaN	21.59	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194150			46849	7162	26933	26934							-0.020200253252596667
SYATLLHVL	9	Unmodified	_SYATLLHVL_					0	0	0		ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.77471923828125	2	508.792392	1015.57023	0.47837	0.00024339	-0.15862	-8.0704E-05	0.31975	0.00016269	508.79214883691753	66.387	0.30257	66.387	66.211	66.514	0					17	10	2	0	0	0	0.072844	1	16609	16609		44.407	14.182	1	189510			46850	7414	26934	26935	57153	57153					0.06306930965638458
SYATLLHVL	9	Unmodified	_SYATLLHVL_					0	0	0		ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7743835449219	2	508.792392	1015.57023	0.41498	0.00021114	-0.66904	-0.0003404	-0.25406	-0.00012926	508.79190532119003	66.256	0.4352	66.34	66.083	66.518	0.083832					23	15	2	0	0	0	0.072844	1	16565	16565		44.407	14.182	1	220830			46851	7414	26934	26935	57154	57154					0.06306930965638458
SYATLLHVL	9	Unmodified	_SYATLLHVL_					0	0	0		ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7746276855469	2	508.792392	1015.57023	0.27123	0.000138	-0.27099	-0.00013788	0.00023678	1.2047E-07	508.792060767615	66.412	0.39471	66.399	66.091	66.485	-0.013596					21	14	2	0	0	0	0.072844	1	16605	16605		44.407	14.182	1	168640			46852	7414	26934	26935	57155	57155					0.06306930965638458
SYAVGRSVK	9	Unmodified	_SYAVGRSVK_					0	0	0			REV__ENSG00000146426|ENST00000682666|TIAM2	REV__ENSG00000146426|ENST00000682666|TIAM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2801208496094	2	483.771991	965.529429	0.14786	7.153E-05	0.50588	0.00024473	0.65374	0.00031626	483.7721258741442	29.061	0.42107	29.074	28.853	29.274	0.013474					21	15	2	0	0	0	0.25066	1	5203	5203		11.64	2.2929	1	94200	+		46853	16349	26935	26936	57156	57156					0.045285896460427466
SYAVGRSVK	9	Unmodified	_SYAVGRSVK_					0	0	0			REV__ENSG00000146426|ENST00000682666|TIAM2	REV__ENSG00000146426|ENST00000682666|TIAM2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	483.771991	965.529429	0.24314	0.00011763	-0.14336	-6.9352E-05	0.099785	4.8273E-05	483.77172233227236	29.042	0.36061	29.055	28.858	29.218	0.012266	-0.00979	-0.00042661	NaN	11.64	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83474	+		46854	16349	26935	26936							0.045285896460427466
SYAVHITSF	9	Unmodified	_SYAVHITSF_					0	0	0		nc|ENSG00000196371|P22083-2|FUT4;ENSG00000196371|ENST00000358752|FUT4	nc|ENSG00000196371|P22083-2|FUT4	nc|ENSG00000196371|P22083-2|FUT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2854614257812	2	512.758549	1023.50255	0.27428	0.00014064	-0.24713	-0.00012672	0.027155	1.3924E-05	512.758405099172	51.936	0.50935	51.936	51.702	52.211	0					38	18	3	0	0	0	0.11397	1	12193	12193		41.84	20.093	1	533270			46855	7855	26936	26937	57157	57157					-0.008265189651410765
SYAVHITSF	9	Unmodified	_SYAVHITSF_					0	0	0		nc|ENSG00000196371|P22083-2|FUT4;ENSG00000196371|ENST00000358752|FUT4	nc|ENSG00000196371|P22083-2|FUT4	nc|ENSG00000196371|P22083-2|FUT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2855834960938	2	512.758549	1023.50255	0.28345	0.00014534	0.15632	8.0154E-05	0.43977	0.0002255	512.7585306822358	51.866	0.41505	51.917	51.729	52.144	0.050571					35	14	3	0	0	0	0.11397	1	12172	12172		34.402	12.655	1	575780			46856	7855	26936	26937	57158	57158					-0.008265189651410765
SYAVHITSF	9	Unmodified	_SYAVHITSF_					0	0	0		nc|ENSG00000196371|P22083-2|FUT4;ENSG00000196371|ENST00000358752|FUT4	nc|ENSG00000196371|P22083-2|FUT4	nc|ENSG00000196371|P22083-2|FUT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2854614257812	2	512.758549	1023.50255	0.0086888	4.4553E-06	0.20038	0.00010275	0.20907	0.0001072	512.7586531568827	52.094	0.48597	52.093	51.819	52.305	-0.00081253					43	17	3	0	0	0	0.09064	1	12212	12212		47.749	26.002	1	509880			46857	7855	26936	26937	57159	57159					-0.008265189651410765
SYAYILEAF	9	Unmodified	_SYAYILEAF_					0	0	0		SLC7A6|p.T189Hfs*25|1|0.37|ENSG00000103064|chr16:68287781-68287782|-/G|frameshift_variant;ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6	SLC7A6|p.T189Hfs*25|1|0.37|ENSG00000103064|chr16:68287781-68287782|-/G|frameshift_variant	SLC7A6|p.T189Hfs*25|1|0.37|ENSG00000103064|chr16:68287781-68287782|-/G|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7689208984375	2	538.768583	1075.52261	0.68664	0.00036994	0.54689	0.00029465	1.2335	0.00066458	538.7687973275907	85.376	1.3024	85.376	84.823	86.125	0					126	49	4	0	0	0	0.00012782	3	22426	22342;22377;22426		136.33	102.23	1	1457500			46858	1807	26937	26938	57160;57161;57162	57162					-0.012127680251978745
SYAYILEAF	9	Unmodified	_SYAYILEAF_					0	0	0		SLC7A6|p.T189Hfs*25|1|0.37|ENSG00000103064|chr16:68287781-68287782|-/G|frameshift_variant;ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6	SLC7A6|p.T189Hfs*25|1|0.37|ENSG00000103064|chr16:68287781-68287782|-/G|frameshift_variant	SLC7A6|p.T189Hfs*25|1|0.37|ENSG00000103064|chr16:68287781-68287782|-/G|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7694091796875	2	538.768583	1075.52261	0.612	0.00032973	0.71619	0.00038586	1.3282	0.00071559	538.7688977222289	85.275	1.4258	85.356	84.78	86.206	0.080887					139	54	4	0	0	0	0.00033443	2	22346	22346;22394		131.27	100.63	1	1351400			46859	1807	26937	26938	57163;57164	57163					-0.012127680251978745
SYAYILEAF	9	Unmodified	_SYAYILEAF_					0	0	0		SLC7A6|p.T189Hfs*25|1|0.37|ENSG00000103064|chr16:68287781-68287782|-/G|frameshift_variant;ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6	SLC7A6|p.T189Hfs*25|1|0.37|ENSG00000103064|chr16:68287781-68287782|-/G|frameshift_variant	SLC7A6|p.T189Hfs*25|1|0.37|ENSG00000103064|chr16:68287781-68287782|-/G|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7688598632812	2	538.768583	1075.52261	0.72792	0.00039218	0.46014	0.00024791	1.1881	0.00064008	538.768723356489	85.317	1.2897	85.305	84.836	86.125	-0.012833					132	49	4	0	0	0	5.6213E-07	2	22405	22405;22503		158.2	112.18	1	1589000			46860	1807	26937	26938	57165;57166	57165					-0.012127680251978745
SYAYILEAF	9	Unmodified	_SYAYILEAF_					0	0	0		SLC7A6|p.T189Hfs*25|1|0.37|ENSG00000103064|chr16:68287781-68287782|-/G|frameshift_variant;ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6	SLC7A6|p.T189Hfs*25|1|0.37|ENSG00000103064|chr16:68287781-68287782|-/G|frameshift_variant	SLC7A6|p.T189Hfs*25|1|0.37|ENSG00000103064|chr16:68287781-68287782|-/G|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7860717773438	2	538.768583	1075.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.174	1	86.165	85.665	86.665	-0.0090027								0	0	0	0.16039	1	22652	22652		32.305	6.9062	1				46861	1807	26937	26938	57167	57167					-0.012127680251978745
SYAYILEAF	9	Unmodified	_SYAYILEAF_					0	0	0		SLC7A6|p.T189Hfs*25|1|0.37|ENSG00000103064|chr16:68287781-68287782|-/G|frameshift_variant;ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6	SLC7A6|p.T189Hfs*25|1|0.37|ENSG00000103064|chr16:68287781-68287782|-/G|frameshift_variant	SLC7A6|p.T189Hfs*25|1|0.37|ENSG00000103064|chr16:68287781-68287782|-/G|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7861328125	2	538.768583	1075.52261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.354	1	86.345	85.845	86.845	-0.0090027								0	0	0	0.16757	1	22707	22707		30.637	8.8899	1				46862	1807	26937	26938	57168	57168					-0.012127680251978745
SYCDQSRI	8	Unmodified	_SYCDQSRI_					0	0	0			REV__ENST00000413422.4_1_19:44085374-44085893:+|nuORF	REV__ENST00000413422.4_1_19:44085374-44085893:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7849426269531	2	486.216192	970.41783	-0.022222	-1.0805E-05	-2.8492	-0.0013853	-2.8714	-0.0013961	486.2148719969591	14.741	0.33511	14.675	14.483	14.818	-0.066068					18	11	2	0	0	0	0.34367	1	830	830		1.8442	1.2427	1	40934	+		46863	19142	26938	26939	57169	57169					-0.06856212773402603
SYCLDLETE	9	Unmodified	_SYCLDLETE_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.7295532226562	2	536.728797	1071.44304	0.47714	0.00025609	0.14687	7.8831E-05	0.62401	0.00033493	536.7292941011581	58.946	1.3129	58.946	58.531	59.844	0					164	45	5	0	0	0	0.17787	1	14351	14351		26.884	0	1	7074900	+		46864	13399	26939	26940	57170	57170					-0.08982202761512781
SYCLDLETE	9	Unmodified	_SYCLDLETE_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.7294311523438	2	536.728797	1071.44304	0.4101	0.00022011	0.27164	0.0001458	0.68174	0.00036591	536.7293524321088	58.83	1.4579	58.922	58.446	59.904	0.091305					165	51	5	0	0	0	0.14076	2	14251	14251;14298		32.305	0	1	7150000	+		46865	13399	26939	26940	57171;57172	57171					-0.08982202761512781
SYCLDLETE	9	Unmodified	_SYCLDLETE_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7295532226562	2	536.728797	1071.44304	0.58088	0.00031178	0.10618	5.6988E-05	0.68706	0.00036876	536.7292246313925	58.897	1.2135	58.883	58.523	59.736	-0.014267					139	42	5	0	0	0	0.14076	2	14277	14277;14380		32.305	0	1	7248900	+		46866	13399	26939	26940	57173;57174	57173					-0.08982202761512781
SYCNCNVDNK	10	Unmodified	_SYCNCNVDNK_					0	0	0			REV__nc|ENSG00000145934|Q9NT68-2|TENM2	REV__nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.276611328125	2	580.228973	1158.44339	0.33338	0.00019344	-1.2269	-0.00071186	-0.89347	-0.00051842	580.7304193027792	49.715	0.19159	49.715	49.572	49.763	0					8	6	2	0	0	0	0.31958	1	11433	11433		5.2969	0.96765	1	235980	+		46867	16318	26940	26941	57175	57175					-0.12949106313317316
SYCNCNVDNK	10	Unmodified	_SYCNCNVDNK_					0	0	0			REV__nc|ENSG00000145934|Q9NT68-2|TENM2	REV__nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	580.228973	1158.44339	0.21951	0.00012737	-1.503	-0.00087209	-1.2835	-0.00074472	580.7304600299075	49.657	0.36826	49.678	49.457	49.825	0.020691	-0.018548	-7.231E-05	NaN	5.2969	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118760	+		46868	16318	26940	26941							-0.12949106313317316
SYDADNTVTL	10	Unmodified	_SYDADNTVTL_					0	0	0			REV__nc|ENSG00000196792|Q13033-2|STRN3	REV__nc|ENSG00000196792|Q13033-2|STRN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2783813476562	2	549.751118	1097.48768	0.26819	0.00014744	-2.3476	-0.0012906	-2.0795	-0.0011432	549.749843744994	69.845	0.65122	69.845	69.398	70.049	0					31	23	2	0	0	0	0.28569	1	17708	17708		26.268	6.8291	1	122560	+		46869	18687	26941	26942	57176	57176					-0.05716055623815919
SYDADNTVTL	10	Unmodified	_SYDADNTVTL_					0	0	0			REV__nc|ENSG00000196792|Q13033-2|STRN3	REV__nc|ENSG00000196792|Q13033-2|STRN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2783813476562	2	549.751118	1097.48768	0.41357	0.00022736	-2.5157	-0.001383	-2.1021	-0.0011556	549.7496669062393	70.37	0.61977	70.37	69.92	70.54	0					36	22	2	0	0	0	0.28569	1	17708	17708		26.268	6.8291	1	123620	+		46870	18687	26941	26942	57177	57177					-0.05716055623815919
SYDAKHESF	9	Unmodified	_SYDAKHESF_					0	0	0			REV__nc|ENSG00000197641|Q9UIV8-2|SERPINB13	REV__nc|ENSG00000197641|Q9UIV8-2|SERPINB13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2420654296875	2	542.240721	1082.46689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.997	1	83.997	83.497	84.497	0								0	0	0	0.19534	1	21999	21999		24.021	0.23079	1		+		46871	18752	26942	26943	57178	57178					-0.07104601212813577
SYDAKHESF	9	Unmodified	_SYDAKHESF_					0	0	0			REV__nc|ENSG00000197641|Q9UIV8-2|SERPINB13	REV__nc|ENSG00000197641|Q9UIV8-2|SERPINB13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2431030273438	2	542.240721	1082.46689	0.77502	0.00042025	2.7776	0.0015061	3.5526	0.0019264	542.2423857057627	83.965	0.45853	83.949	83.723	84.181	-0.016823					33	20	2	0	0	0	0.18803	2	21974	21974;22026		25.399	1.6095	1	311960	+		46872	18752	26942	26943	57179;57180	57179					-0.07104601212813577
SYDHVELTF	9	Unmodified	_SYDHVELTF_					0	0	0		ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENSG00000132471|ENST00000254806|WBP2;ENST00000592802.1_1_17:73847561-73851408:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000587642.5_1_17:73844624-73847864:-|nuORF	ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2742309570312	2	555.758746	1109.50294	0.43691	0.00024282	0.40783	0.00022665	0.84474	0.00046947	555.7588134248537	57.039	1.0846	57.039	56.713	57.798	0					88	39	3	0	0	0	0.0028127	5	13729	13729;13774;13823;13872;13933		103.75	70.963	1	3274400			46873	3639;12131	26943	26944	57181;57182;57183;57184;57185	57181					-0.04743144035955993
SYDHVELTF	9	Unmodified	_SYDHVELTF_					0	0	0		ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENSG00000132471|ENST00000254806|WBP2;ENST00000592802.1_1_17:73847561-73851408:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000587642.5_1_17:73844624-73847864:-|nuORF	ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2744750976562	2	555.758746	1109.50294	0.34322	0.00019075	0.53115	0.00029519	0.87437	0.00048594	555.7588540649147	56.9	0.75202	56.979	56.678	57.43	0.078674					73	27	3	0	0	0	0.0028127	3	13687	13687;13738;13788		103.75	65.573	1	3214400			46874	3639;12131	26943	26944	57186;57187;57188	57186					-0.04743144035955993
SYDHVELTF	9	Unmodified	_SYDHVELTF_					0	0	0		ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENSG00000132471|ENST00000254806|WBP2;ENST00000592802.1_1_17:73847561-73851408:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000587642.5_1_17:73844624-73847864:-|nuORF	ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF	ENST00000416574.6_1_17:73843478-73851408:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2744140625	2	555.758746	1109.50294	0.19519	0.00010848	0.40487	0.00022501	0.60006	0.00033349	555.7588327001256	57.173	0.76369	57.154	56.865	57.629	-0.019081					69	27	3	0	0	0	0.017391	2	13804	13804;13850		68.081	46.544	1	3570900			46875	3639;12131	26943	26944	57189;57190	57189					-0.04743144035955993
SYDHVIYSL	9	Unmodified	_SYDHVIYSL_					0	0	0		ENSG00000159459|ENST00000290650|UBR1;UBR1|p.S597Vfs*6|1|0.11|ENSG00000159459|chr15:43043276-43043277|-/T|frameshift_variant;nc|ENSG00000159459|Q8IWV7-2|UBR1	ENSG00000159459|ENST00000290650|UBR1	ENSG00000159459|ENST00000290650|UBR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7932739257812	2	548.769114	1095.52368	0.78972	0.00043337	-0.22651	-0.0001243	0.56321	0.00030907	548.7690520335286	54.748	0.42096	54.748	54.496	54.917	0					23	15	2	0	0	0	0.12743	1	12992	12992		37.974	5.6685	1	259320			46876	5410	26944	26945	57191	57191					-0.020265536563101705
SYDPDFNQL	9	Unmodified	_SYDPDFNQL_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;ENST00000467954.5_1_X:48339852-48341236:+|nuORF;ENST00000490202.5_1_X:48339880-48341236:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7404174804688	2	549.740554	1097.46655	0.33432	0.00018379	-0.3538	-0.0001945	-0.019488	-1.0713E-05	549.7403612824063	59.181	0.72577	59.181	58.864	59.59	0					93	25	5	0	0	0	5.7257E-07	2	14385	14337;14385		157.8	107.86	1	2155300			46877	884	26945	26946	57192;57193	57193					-0.0782802093265218
SYDPDFNQL	9	Unmodified	_SYDPDFNQL_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;ENST00000467954.5_1_X:48339852-48341236:+|nuORF;ENST00000490202.5_1_X:48339880-48341236:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7406616210938	2	549.740554	1097.46655	0.47776	0.00026264	-0.50332	-0.00027669	-0.02556	-1.4051E-05	549.7403098655856	59.02	0.75294	59.111	58.764	59.517	0.091301					95	26	5	0	0	0	5.7257E-07	1	14320	14320		157.8	107.86	1	2544800			46878	884	26945	26946	57194	57194					-0.0782802093265218
SYDPDFNQL	9	Unmodified	_SYDPDFNQL_					0	0	0		ENSG00000068438|ENST00000348411|FTSJ1;ENST00000467954.5_1_X:48339852-48341236:+|nuORF;ENST00000490202.5_1_X:48339880-48341236:+|nuORF	ENSG00000068438|ENST00000348411|FTSJ1	ENSG00000068438|ENST00000348411|FTSJ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7406005859375	2	549.740554	1097.46655	0.55011	0.00030242	-0.3979	-0.00021874	0.15221	8.3675E-05	549.7403141978862	59.142	0.6557	59.127	58.86	59.515	-0.014267					85	22	5	0	0	0	7.3453E-05	2	14353	14311;14353		145.13	101.27	1	2492800			46879	884	26945	26946	57195;57196	57196					-0.0782802093265218
SYDPTIENTF	10	Unmodified	_SYDPTIENTF_					0	0	0		ENSG00000106615|ENST00000262187|RHEB	ENSG00000106615|ENST00000262187|RHEB	ENSG00000106615|ENST00000262187|RHEB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.7660522460938	2	593.766768	1185.51898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.425	1	60.425	59.925	60.925	0								0	0	0	0.0602	1	14777	14777		61.602	38.866	1				46880	2088	26946	26947	57197	57197					-0.06635482589740604
SYDPTIENTF	10	Unmodified	_SYDPTIENTF_					0	0	0		ENSG00000106615|ENST00000262187|RHEB	ENSG00000106615|ENST00000262187|RHEB	ENSG00000106615|ENST00000262187|RHEB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.765625	2	593.766768	1185.51898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.313	1	60.408	59.908	60.908	0.095093								0	0	0	0.030387	1	14736	14736		67.081	35.812	1				46881	2088	26946	26947	57198	57198					-0.06635482589740604
SYEDFFSAL	9	Unmodified	_SYEDFFSAL_					0	0	0		ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8147583007812	2	539.740022	1077.46549	0.71255	0.00038459	0.29543	0.00015946	1.008	0.00054405	539.740056938431	86.076	0.60938	86.067	85.673	86.283	-0.0090027					37	22	2	0	0	0	0.24289	1	22591	22591		18.146	11.792	1	117590			46882	5098	26947	26948	57199	57199					-0.07014235301562621
SYEDFFSAL	9	Unmodified	_SYEDFFSAL_					0	0	0		ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	539.740022	1077.46549	0.67174	0.00036256	0.3597	0.00019415	1.0314	0.00055671	539.7401726503275	86.041	0.48439	86.041	85.74	86.224	0	0.020112	6.2711E-05	NaN	18.146	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135440			46883	5098	26947	26948							-0.07014235301562621
SYEDFFSAL	9	Unmodified	_SYEDFFSAL_					0	0	0		ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	ENSG00000153989|ENST00000368494|NUS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	539.740022	1077.46549	0.57765	0.00031178	0.2518	0.0001359	0.82944	0.00044768	539.7399916441602	85.87	0.56677	85.954	85.669	86.235	0.084251	-0.066586	-5.3771E-05	NaN	18.146	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177340			46884	5098	26947	26948							-0.07014235301562621
SYEEICPQREK	11	Unmodified	_SYEEICPQREK_					0	0	0		ENST00000509525.5_1_5:132534789-132560973:-|nuORF;nc|ENSG00000053108|Q6MZW2-3|FSTL4;nc|ENSG00000053108|Q6MZW2-2|FSTL4;FSTL4|p.G790Vfs*6|1|0.28|ENSG00000053108|chr5:133199255-133199255|C/-|frameshift_variant;ENSG00000053108|ENST00000265342|FSTL4	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.28521728515625	3	461.218731	1380.63436	0.099132	4.5722E-05	0.08462	3.9028E-05	0.18375	8.475E-05	461.2188784530536	51.882	0.41374	51.933	51.788	52.202	0.050571					25	14	2	0	0	0	0.3299	1	12123	12123		9.7643	4.5658	1	217090			46885	11359	26948	26949	57200	57200					-0.04072701730387962
SYEEICPQREK	11	Unmodified	_SYEEICPQREK_					0	0	0		ENST00000509525.5_1_5:132534789-132560973:-|nuORF;nc|ENSG00000053108|Q6MZW2-3|FSTL4;nc|ENSG00000053108|Q6MZW2-2|FSTL4;FSTL4|p.G790Vfs*6|1|0.28|ENSG00000053108|chr5:133199255-133199255|C/-|frameshift_variant;ENSG00000053108|ENST00000265342|FSTL4	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	461.218731	1380.63436	-0.016552	-7.6342E-06	0.27604	0.00012732	0.25949	0.00011968	461.55311843348125	51.972	0.36422	51.972	51.759	52.123	0	-0.049934	-0.00023351	NaN	9.7643	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189450			46886	11359	26948	26949							-0.04072701730387962
SYEEICPQREK	11	Unmodified	_SYEEICPQREK_					0	0	0		ENST00000509525.5_1_5:132534789-132560973:-|nuORF;nc|ENSG00000053108|Q6MZW2-3|FSTL4;nc|ENSG00000053108|Q6MZW2-2|FSTL4;FSTL4|p.G790Vfs*6|1|0.28|ENSG00000053108|chr5:133199255-133199255|C/-|frameshift_variant;ENSG00000053108|ENST00000265342|FSTL4	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	ENST00000509525.5_1_5:132534789-132560973:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	461.218731	1380.63436	-0.019389	-8.9424E-06	0.78676	0.00036287	0.76737	0.00035392	461.21893992399555	52.161	0.59309	52.16	51.876	52.469	-0.00081253	0.13868	0.00047314	NaN	9.7643	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232140			46887	11359	26948	26949							-0.04072701730387962
SYEIKHASAP	10	Unmodified	_SYEIKHASAP_					0	0	0			REV__ENSG00000166225|ENST00000549921|FRS2	REV__ENSG00000166225|ENST00000549921|FRS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.26611328125	2	551.780013	1101.54547	0.57388	0.00031666	-4.008	-0.0022115	-3.4341	-0.0018949	551.7783642182588	77.242	0.19047	77.242	77.117	77.308	0					8	6	2	0	0	0	0.30586	1	19927	19927		5.7319	0	1	103700	+		46888	17302	26949	26950	57201	57201					-0.0012374890770843194
SYEKIYNL	8	Unmodified	_SYEKIYNL_					0	0	0		ENSG00000099338|ENST00000409235|CATSPERG;ENST00000471517.5_1_19:38845366-38853372:+|nuORF;ENST00000412458.6_1_19:38845366-38860119:+|nuORF	ENSG00000099338|ENST00000409235|CATSPERG	ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2660522460938	2	515.266207	1028.51786	0.51678	0.00026628	0.054651	2.816E-05	0.57143	0.00029444	515.2660881746174	60.852	0.66866	60.949	60.552	61.221	0.096985					46	23	3	0	0	0	0.30157	1	14926	14926		30.637	6.616	1	886860			46889	1485	26950	26951	57202	57202					0.004743478320506256
SYELRYFQI	9	Unmodified	_SYELRYFQI_					0	0	0		ENST00000480427.1_1_12:125420028-125420310:-|nuORF;ENSG00000116251|ENST00000234875|RPL22	ENST00000480427.1_1_12:125420028-125420310:-|nuORF	ENST00000480427.1_1_12:125420028-125420310:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.8106079101562	2	609.811313	1217.60807	0.41516	0.00025317	-0.85358	-0.00052052	-0.43842	-0.00026735	609.8103985325826	66.754	0.85154	66.754	66.341	67.193	0					55	27	3	0	0	0	0.0073901	1	16739	16739		83.429	54.347	1	302590			46890	2717	26951	26952	57203	57203					0.007973971604542385
SYEYRFLEF	9	Unmodified	_SYEYRFLEF_					0	0	0		ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.2960205078125	2	627.295496	1252.57644	0.39383	0.00024705	-0.10928	-6.8553E-05	0.28455	0.00017849	627.2956355898831	70.329	0.68475	70.329	69.972	70.657	0					54	24	3	0	0	0	0.016571	2	17794	17794;17842		69.338	54.09	1	733520			46891	3558	26952	26953	57204;57205	57204					-0.03974595593467711
SYEYRFLEF	9	Unmodified	_SYEYRFLEF_					0	0	0		ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.2955322265625	2	627.295496	1252.57644	0.092253	5.787E-05	0.40232	0.00025237	0.49457	0.00031024	627.2957934244636	70.334	0.70346	70.395	70.096	70.8	0.061134					64	24	4	0	0	0	0.0066776	2	17804	17804;17854		84.522	58.254	1	623630			46892	3558	26952	26953	57206;57207	57206					-0.03974595593467711
SYEYRFLEF	9	Unmodified	_SYEYRFLEF_					0	0	0		ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	ENSG00000131378|ENST00000334133|RFTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.796875	2	627.295496	1252.57644	0.26488	0.00016616	-0.0097274	-6.1019E-06	0.25515	0.00016005	627.2955961748827	70.422	0.92001	70.397	70.079	70.999	-0.024872					70	32	3	0	0	0	0.0066776	2	17822	17822;17872		84.522	50.965	1	688030			46893	3558	26952	26953	57208;57209	57208					-0.03974595593467711
SYFALQVGK	9	Unmodified	_SYFALQVGK_					0	0	0		ENST00000502587.1_1_4:140587164-140599797:+|nuORF;ENST00000515067.1_1_4:140587191-140608853:+|nuORF;nc|ENSG00000085871|Q99735-2|MGST2;ENSG00000085871|ENST00000265498|MGST2	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.76776123046875	2	506.776742	1011.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.033	1	50.078	49.578	50.578	0.044891								0	0	0	0.10252	1	11572	11572		45.74	18.856	1				46894	1268	26953	26954	57210	57210					0.033623579315758434
SYFALQVGK	9	Unmodified	_SYFALQVGK_					0	0	0		ENST00000502587.1_1_4:140587164-140599797:+|nuORF;ENST00000515067.1_1_4:140587191-140608853:+|nuORF;nc|ENSG00000085871|Q99735-2|MGST2;ENSG00000085871|ENST00000265498|MGST2	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.767822265625	2	506.776742	1011.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.746	1	49.767	49.267	50.267	0.020691								0	0	0	0.17427	1	11475	11475		29.082	4.4077	1				46895	1268	26953	26954	57211	57211					0.033623579315758434
SYFALQVGK	9	Unmodified	_SYFALQVGK_					0	0	0		ENST00000502587.1_1_4:140587164-140599797:+|nuORF;ENST00000515067.1_1_4:140587191-140608853:+|nuORF;nc|ENSG00000085871|Q99735-2|MGST2;ENSG00000085871|ENST00000265498|MGST2	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.76788330078125	2	506.776742	1011.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.912	1	49.933	49.433	50.433	0.020691								0	0	0	0.10252	1	11526	11526		45.74	20.749	1				46896	1268	26953	26954	57212	57212					0.033623579315758434
SYFALQVGK	9	Unmodified	_SYFALQVGK_					0	0	0		ENST00000502587.1_1_4:140587164-140599797:+|nuORF;ENST00000515067.1_1_4:140587191-140608853:+|nuORF;nc|ENSG00000085871|Q99735-2|MGST2;ENSG00000085871|ENST00000265498|MGST2	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	ENST00000502587.1_1_4:140587164-140599797:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.76776123046875	2	506.776742	1011.53893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.066	1	50.086	49.586	50.586	0.020691								0	0	0	0.10252	1	11574	11574		45.74	20.749	1				46897	1268	26953	26954	57213	57213					0.033623579315758434
SYFEYLMFALI	11	Unmodified	_SYFEYLMFALI_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7655334472656	3	466.23343	1395.67846	0.28146	0.00013123	2.2906	0.0010679	2.572	0.0011992	466.2347976667531	53.332	0.41927	53.322	53.192	53.611	-0.0096092					26	15	3	0	0	0	0.32951	1	12546	12546		7.0371	2.6309	1	426100			46898	1179	26954	26955	57214	57214					-0.0035506556605469086
SYFGSFSSL	9	Unmodified	_SYFGSFSSL_					0	0	0		ENSG00000145016|ENST00000296343|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;nc|ENSG00000145016|Q92622-3|RUBCN	ENSG00000145016|ENST00000296343|RUBCN	ENSG00000145016|ENST00000296343|RUBCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7295227050781	2	497.729458	993.444362	0.46709	0.00023249	0.058042	2.8889E-05	0.52513	0.00026137	497.7292397117233	72.983	0.60912	72.983	72.726	73.335	0					47	21	3	0	0	0	0.00033443	1	18644	18644		131.27	93.116	1	364380			46899	4629	26955	26956	57215	57215					-0.052622006104115826
SYFGSFSSL	9	Unmodified	_SYFGSFSSL_					0	0	0		ENSG00000145016|ENST00000296343|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;nc|ENSG00000145016|Q92622-3|RUBCN	ENSG00000145016|ENST00000296343|RUBCN	ENSG00000145016|ENST00000296343|RUBCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7294006347656	2	497.729458	993.444362	0.35743	0.00017791	-0.061068	-3.0395E-05	0.29637	0.00014751	497.7293318185394	72.908	0.71156	72.962	72.707	73.419	0.053833					49	25	3	0	0	0	0.0013036	1	18608	18608		118.89	80.744	1	306030			46900	4629	26955	26956	57216	57216					-0.052622006104115826
SYFGSFSSL	9	Unmodified	_SYFGSFSSL_					0	0	0		ENSG00000145016|ENST00000296343|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;nc|ENSG00000145016|Q92622-3|RUBCN	ENSG00000145016|ENST00000296343|RUBCN	ENSG00000145016|ENST00000296343|RUBCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7764892578125	2	497.729458	993.444362	0.49053	0.00024415	-0.18018	-8.9679E-05	0.31035	0.00015447	497.72927889529376	72.952	0.66463	72.922	72.71	73.374	-0.029305					48	23	3	0	0	0	0.066761	1	18667	18667		65.235	38.351	1	341900			46901	4629	26955	26956	57217	57217					-0.052622006104115826
SYFKRHLLF	9	Unmodified	_SYFKRHLLF_					0	0	0			REV__ENST00000378078.4_1_9:35750334-35750711:+|nuORF	REV__ENST00000378078.4_1_9:35750334-35750711:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.9291687011719	3	404.229231	1209.66586	-0.29001	-0.00011723	-0.71746	-0.00029002	-1.0075	-0.00040725	404.2285175012145	41.24	0.28655	41.24	41.069	41.355	0					12	10	2	0	0	0	0.25843	1	8858	8858		5.7319	0.43497	1	87570	+		46902	20515	26956	26957	57218	57218					0.06941703876555039
SYFLISLSRS	10	Unmodified	_SYFLISLSRS_					0	0	0			REV__ENST00000466900.5_1_3:37035370-37047454:+|nuORF	REV__ENST00000466900.5_1_3:37035370-37047454:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8336791992188	2	586.819138	1171.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.802	1	79.802	79.302	80.302	0								0	0	0	0.3726	1	20711	20711		5.2969	0.066215	1		+		46903	21291	26957	26958	57219	57219					0.04477683677509958
SYFMYCVSLI	10	Unmodified	_SYFMYCVSLI_					0	0	0			REV__ENST00000574382.1_1_17:9460501-9460639:-|nuORF	REV__ENST00000574382.1_1_17:9460501-9460639:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2082214355469	3	409.192578	1224.5559	0.14456	5.9154E-05	1.1539	0.00047218	1.2985	0.00053134	409.1929717968183	30.319	0.72934	30.347	29.992	30.721	0.027946					64	25	4	0	0	0	0.38522	1	5558	5558		6.1918	0	1	256040	+		46904	22429	26958	26959	57220	57220					-0.04739225569142036
SYFPTVPGVYI	11	Unmodified	_SYFPTVPGVYI_					0	0	0		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000477629.1_1_3:58135593-58136214:+|nuORF	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3473510742188	2	621.823889	1241.63323	0.45582	0.00028344	0.36717	0.00022832	0.82299	0.00051176	621.8241312696015	87.482	0.38448	87.482	87.346	87.731	0					30	17	2	0	0	0	0.3826	3	23081	23060;23081;23115		17.113	13.516	1	88029			46905	3941	26959	26960	57221;57222;57223	57222					0.02207451963067797
SYFPTVPGVYI	11	Unmodified	_SYFPTVPGVYI_					0	0	0		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000477629.1_1_3:58135593-58136214:+|nuORF	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3464965820312	2	621.823889	1241.63323	0.14947	9.2941E-05	0.87917	0.00054669	1.0286	0.00063963	621.8243651555204	87.376	0.37752	87.464	87.305	87.682	0.08709					28	17	2	0	0	0	0.4112	2	23038	23038;23043		17.113	17.113	1	111490			46906	3941	26959	26960	57224;57225	57224					0.02207451963067797
SYFPTVPGVYI	11	Unmodified	_SYFPTVPGVYI_					0	0	0		nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000477629.1_1_3:58135593-58136214:+|nuORF	nc|ENSG00000136068|O75369-5|FLNB	nc|ENSG00000136068|O75369-5|FLNB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3472290039062	2	621.823889	1241.63323	0.30633	0.00019048	0.67809	0.00042166	0.98442	0.00061214	621.8240848638483	87.513	0.39297	87.507	87.317	87.71	-0.0056152					32	20	2	0	0	0	0.3826	1	23051	23051		22.736	13.991	1	127640			46907	3941	26959	26960	57226	57226					0.02207451963067797
SYFQQQLTF	9	Unmodified	_SYFQQQLTF_					0	0	0		ENST00000480463.6_1_6:52943619-52957704:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9;ENST00000484812.1_1_6:52945793-52957386:+|nuORF	ENST00000480463.6_1_6:52943619-52957704:+|nuORF	ENST00000480463.6_1_6:52943619-52957704:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3006591796875	2	581.282389	1160.55022	0.30864	0.00017941	-0.11676	-6.7868E-05	0.19188	0.00011154	581.282295904878	70.466	0.61086	70.466	70.157	70.768	0					58	21	4	0	0	0	0.0066776	2	17878	17878;17947		84.522	48.395	1	331210			46908	2414	26960	26961	57227;57228	57227					-0.023628647649729828
SYFQQQLTF	9	Unmodified	_SYFQQQLTF_					0	0	0		ENST00000480463.6_1_6:52943619-52957704:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9;ENST00000484812.1_1_6:52945793-52957386:+|nuORF	ENST00000480463.6_1_6:52943619-52957704:+|nuORF	ENST00000480463.6_1_6:52943619-52957704:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.3004760742188	2	581.282389	1160.55022	0.32128	0.00018675	-0.26608	-0.00015467	0.055197	3.2085E-05	581.2823421715578	70.455	0.56271	70.516	70.237	70.8	0.060783					45	19	4	0	0	0	0.0028032	3	17861	17809;17861;17912		103.82	67.697	1	413160			46909	2414	26960	26961	57229;57230;57231	57230					-0.023628647649729828
SYFQQQLTF	9	Unmodified	_SYFQQQLTF_					0	0	0		ENST00000480463.6_1_6:52943619-52957704:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9;ENST00000484812.1_1_6:52945793-52957386:+|nuORF	ENST00000480463.6_1_6:52943619-52957704:+|nuORF	ENST00000480463.6_1_6:52943619-52957704:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.30078125	2	581.282389	1160.55022	0.36282	0.0002109	-0.31543	-0.00018336	0.047388	2.7546E-05	581.2820003912482	70.557	0.60618	70.532	70.275	70.881	-0.024864					42	21	3	0	0	0	0.0040516	3	17874	17825;17874;17936		93.938	57.811	1	363920			46910	2414	26960	26961	57232;57233;57234	57233					-0.023628647649729828
SYFRLNKDT	9	Unmodified	_SYFRLNKDT_					0	0	0		nc|ENSG00000186628|A1L4K1-2|FSD2;ENSG00000186628|ENST00000334574|FSD2	nc|ENSG00000186628|A1L4K1-2|FSD2	nc|ENSG00000186628|A1L4K1-2|FSD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2940673828125	2	572.293288	1142.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.622	1	12.622	12.122	13.122	0								0	0	0	0.26513	1	181	181		1.4819	0.15237	1				46911	7630	26961	26962	57235	57235					0.006439399836153825
SYFVENGLFL	10	Unmodified	_SYFVENGLFL_					0	0	0		ENST00000487422.1_1_X:154753982-154774937:-|nuORF	ENST00000487422.1_1_X:154753982-154774937:-|nuORF	ENST00000487422.1_1_X:154753982-154774937:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.7677612304688	2	594.800414	1187.58628	0.49893	0.00029677	-0.53668	-0.00031922	-0.037749	-2.2453E-05	595.3014434539998	71.761	0.18738	71.734	71.658	71.845	-0.027275					11	6	2	0	0	0	0.31889	1	18247	18247		6.2058	0	1	232310			46912	11119	26962	26963	57236	57236					-1.4075880926611717E-05
SYFYEGHSF	9	Unmodified	_SYFYEGHSF_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2994995117188	2	568.737814	1135.46108	0.58432	0.00033233	-2.1243	-0.0012082	-1.54	-0.00087587	568.7361368061293	54.617	0.41452	54.617	54.322	54.736	0					18	14	2	0	0	0	0.25066	1	12944	12944		3.9444	0.3479	1	127830	+		46913	19226	26963	26964	57237	57237					-0.10123699724476865
SYGEYRDLF	9	Unmodified	_SYGEYRDLF_					0	0	0		ENSG00000021852|ENST00000371237|C8B	ENSG00000021852|ENST00000371237|C8B	ENSG00000021852|ENST00000371237|C8B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.8085327148438	2	575.264196	1148.51384	0.40838	0.00023493	0.3392	0.00019513	0.74759	0.00043006	575.2641169187134	37.266	0.57254	37.353	37.062	37.634	0.087406					31	20	2	0	0	0	0.2451	1	7629	7629		15.847	5.0233	1	358670			46914	513	26964	26965	57238	57238					-0.0544774166166917
SYGIIRGLQF	10	Unmodified	_SYGIIRGLQF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.7615356445312	2	577.321848	1152.62914	0.33981	0.00019618	0.2079	0.00012003	0.54771	0.00031621	577.3219122290859	66.586	0.56769	66.586	66.341	66.909	0					29	19	2	0	0	0	0.17942	1	16646	16646		57.249	43.343	1	366680			46915	6781	26965	26966	57239	57239					0.05893407259986816
SYGIIRGLQF	10	Unmodified	_SYGIIRGLQF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3224487304688	2	577.321848	1152.62914	0.38922	0.00022471	0.58408	0.0003372	0.9733	0.00056191	577.3219151572289	66.439	0.46358	66.523	66.246	66.71	0.083832					38	16	3	0	0	0	0.0092666	1	16640	16640		83.429	51.123	1	330940			46916	6781	26965	26966	57240	57240					0.05893407259986816
SYGIIRGLQF	10	Unmodified	_SYGIIRGLQF_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.76171875	2	577.321848	1152.62914	0.18392	0.00010618	0.5683	0.00032809	0.75222	0.00043427	577.3218729599994	66.527	0.4884	66.513	66.353	66.842	-0.013596					27	17	2	0	0	0	0.12729	1	16632	16632		69.338	46.602	1	270560			46917	6781	26965	26966	57241	57241					0.05893407259986816
SYGKINILL	9	Unmodified	_SYGKINILL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8077392578125	2	510.808042	1019.60153	-0.078522	-4.011E-05	-0.30547	-0.00015604	-0.38399	-0.00019615	510.8077872375659	60.143	0.70378	60.143	59.844	60.548	0					77	25	5	0	0	0	0.011693	2	14705	14656;14705		76.825	29.23	1	4434700			46918	2426	26966	26967	57242;57243	57243					0.09251503999746546
SYGKINILL	9	Unmodified	_SYGKINILL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8077697753906	2	510.808042	1019.60153	-0.39934	-0.00020399	0.17365	8.8701E-05	-0.22569	-0.00011529	510.80805941033196	60.015	0.84036	60.11	59.828	60.668	0.095089					75	30	4	0	0	0	0.0028542	2	14658	14611;14658		103.42	23.823	1	3955300			46919	2426	26966	26967	57244;57245	57245					0.09251503999746546
SYGKINILL	9	Unmodified	_SYGKINILL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.80767822265625	2	510.808042	1019.60153	0.058351	2.9806E-05	-0.24995	-0.00012768	-0.1916	-9.7872E-05	510.8077846455148	60.103	0.6646	60.092	59.85	60.514	-0.011486					68	23	4	0	0	0	0.011693	3	14691	14640;14691;14739		76.825	21.322	1	3631300			46920	2426	26966	26967	57246;57247;57248	57247					0.09251503999746546
SYGLILSLVF	10	Unmodified	_SYGLILSLVF_					0	0	0			REV__ENST00000472488.5_1_1:160085570-160106822:+|nuORF	REV__ENST00000472488.5_1_1:160085570-160106822:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3054809570312	2	556.323525	1110.6325	0.67877	0.00037762	0.81626	0.0004541	1.495	0.00083172	556.3239943749826	74.719	0.36819	74.719	74.566	74.934	0					17	12	2	0	0	0	0.2892	1	19140	19140		21.747	1.293	1	152710	+		46921	13455	26967	26968	57249	57249					0.08160657314010678
SYGLILSLVF	10	Unmodified	_SYGLILSLVF_					0	0	0			REV__ENST00000472488.5_1_1:160085570-160106822:+|nuORF	REV__ENST00000472488.5_1_1:160085570-160106822:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3056030273438	2	556.323525	1110.6325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.604	1	74.656	74.156	75.156	0.052361								0	0	0	0.33354	1	19119	19119		21.747	1.293	1		+		46922	13455	26967	26968	57250	57250					0.08160657314010678
SYGLILSLVF	10	Unmodified	_SYGLILSLVF_					0	0	0			REV__ENST00000472488.5_1_1:160085570-160106822:+|nuORF	REV__ENST00000472488.5_1_1:160085570-160106822:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.305419921875	2	556.323525	1110.6325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.754	1	74.806	74.306	75.306	0.052361								0	0	0	0.30803	1	19163	19163		26.884	5.137	1		+		46923	13455	26967	26968	57251	57251					0.08160657314010678
SYGPITVYF	9	Unmodified	_SYGPITVYF_					0	0	0		ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3038940429688	2	523.7633	1045.51205	0.60554	0.00031716	0.38843	0.00020344	0.99397	0.00052061	523.7636747127382	79.086	0.43058	79.147	78.922	79.353	0.061417					36	20	3	0	0	0	0.24688	1	20488	20488		14.838	3.198	1	125370			46924	7809	26968	26969	57252	57252					-0.008887506796327216
SYGPITVYF	9	Unmodified	_SYGPITVYF_					0	0	0		ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	ENSG00000189227|ENST00000342683|C15orf61	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3038940429688	2	523.7633	1045.51205	0.70492	0.00036921	0.31228	0.00016356	1.0172	0.00053277	523.7636963864235	79.205	0.50825	79.176	78.935	79.443	-0.028923					35	21	2	0	0	0	0.2451	1	20495	20495		15.847	4.2069	1	165220			46925	7809	26968	26969	57253	57253					-0.008887506796327216
SYGSVFKAI	9	Unmodified	_SYGSVFKAI_					0	0	0		ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3	ENSG00000104375|ENST00000419617|STK3	ENSG00000104375|ENST00000419617|STK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2635803222656	2	486.263468	970.512382	0.3182	0.00015473	-0.11207	-5.4496E-05	0.20612	0.00010023	486.26319411165167	51.552	1.0764	51.552	51.248	52.324	0					100	39	4	0	0	0	0.0010968	2	12021	12021;12083		121.53	79.694	1	5183300			46926	1886	26969	26970	57254;57255	57254					0.025946690402406603
SYGSVFKAI	9	Unmodified	_SYGSVFKAI_					0	0	0		ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3	ENSG00000104375|ENST00000419617|STK3	ENSG00000104375|ENST00000419617|STK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2634582519531	2	486.263468	970.512382	0.2544	0.00012371	-0.0051748	-2.5163E-06	0.24923	0.00012119	486.2632821428427	51.495	1.1381	51.542	51.221	52.359	0.046574					96	41	4	0	0	0	0.0024096	2	12014	12014;12066		106.94	66.983	1	5975200			46927	1886	26969	26970	57256;57257	57256					0.025946690402406603
SYGSVFKAI	9	Unmodified	_SYGSVFKAI_					0	0	0		ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000104375|Q13188-2|STK3	ENSG00000104375|ENST00000419617|STK3	ENSG00000104375|ENST00000419617|STK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.2815856933594	2	486.263468	970.512382	0.22954	0.00011162	0.021883	1.0641E-05	0.25142	0.00012226	486.2632875685141	51.673	1.1325	51.683	51.347	52.48	0.0095673					102	41	4	0	0	0	0.069366	1	12094	12094		45.7	1.2926	1	5260900			46928	1886	26969	26970	57258	57258					0.025946690402406603
SYGVHKAIE	9	Unmodified	_SYGVHKAIE_					0	0	0			REV__GRIA1|p.T577Ifs*5|1|0.02|ENSG00000155511|chr5:153705973-153705974|-/TAGT|frameshift_variant	REV__GRIA1|p.T577Ifs*5|1|0.02|ENSG00000155511|chr5:153705973-153705974|-/TAGT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7900695800781	2	502.263999	1002.51345	0.038134	1.9153E-05	2.45	0.0012305	2.4881	0.0012497	502.26526086895643	14.516	0.34212	14.516	14.249	14.591	0					15	11	2	0	0	0	0.2451	1	693	693		15.847	5.0233	1	46928	+		46929	16701	26970	26971	57259	57259					0.012288834091236822
SYGYQFPGF	9	Unmodified	_SYGYQFPGF_					0	0	0		ENSG00000153944|ENST00000284073|MSI2	ENSG00000153944|ENST00000284073|MSI2	ENSG00000153944|ENST00000284073|MSI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2377319335938	2	533.23745	1064.46035	0.6416	0.00034212	-0.33088	-0.00017644	0.31072	0.00016569	533.2373476297294	75.065	1.0554	75.065	74.765	75.821	0					117	37	5	0	0	0	0.00070271	3	19275	19228;19275;19327		126.57	94.26	1	2555200			46930	5095	26971	26972	57260;57261;57262	57261					-0.06930494373523288
SYGYQFPGF	9	Unmodified	_SYGYQFPGF_					0	0	0		ENSG00000153944|ENST00000284073|MSI2	ENSG00000153944|ENST00000284073|MSI2	ENSG00000153944|ENST00000284073|MSI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2376708984375	2	533.23745	1064.46035	0.37764	0.00020137	-0.0098554	-5.2553E-06	0.36779	0.00019612	533.2375091085146	75.003	1.0781	75.055	74.758	75.836	0.052361					118	39	5	0	0	0	0.0016361	3	19253	19205;19253;19299		114.65	88.381	1	2510300			46931	5095	26971	26972	57263;57264;57265	57264					-0.06930494373523288
SYGYQFPGF	9	Unmodified	_SYGYQFPGF_					0	0	0		ENSG00000153944|ENST00000284073|MSI2	ENSG00000153944|ENST00000284073|MSI2	ENSG00000153944|ENST00000284073|MSI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2377319335938	2	533.23745	1064.46035	0.73931	0.00039423	-0.35052	-0.00018691	0.38879	0.00020732	533.2373056755506	75.114	1.0166	75.083	74.812	75.829	-0.031487					119	37	5	0	0	0	0.0028626	3	19276	19230;19276;19324		103.35	77.954	1	2767800			46932	5095	26971	26972	57266;57267;57268	57267					-0.06930494373523288
SYHELIFDK	9	Unmodified	_SYHELIFDK_					0	0	0			REV__ENST00000557586.1_1_15:20467168-20482152:-|nuORF	REV__ENST00000557586.1_1_15:20467168-20482152:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.293212890625	2	576.290214	1150.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.24	1	113.25	112.75	113.75	0.014824								0	0	0	0.24715	1	29463	29463		7.2892	2.96	1		+		46933	15540	26972	26973	57269	57269					-0.0033857824791994062
SYHGHFIMKIG	11	Unmodified	_SYHGHFIMKIG_					0	0	0			REV__ENST00000449298.1_1_1:247803159-247803258:+|nuORF	REV__ENST00000449298.1_1_1:247803159-247803258:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	645.3267211914062	2	645.326608	1288.63866	0.53373	0.00034443	-0.22194	-0.00014323	0.31179	0.00020121	645.3264389505052	53.262	1.2285	53.262	53.012	54.24	0					123	45	5	0	0	0	0.44523	1	12536	12536		5.2969	0.39987	1	6632800	+		46934	21102	26973	26974	57270	57270					0.0058885227385871985
SYHYECLSL	9	Unmodified	_SYHYECLSL_					0	0	0		ENST00000377630.9_1_20:18445902-18445998:-|nuORF	ENST00000377630.9_1_20:18445902-18445998:-|nuORF	ENST00000377630.9_1_20:18445902-18445998:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2579345703125	2	557.747324	1113.4801	0.42197	0.00023535	-0.56738	-0.00031645	-0.1454	-8.1099E-05	557.7470265072685	58.17	0.80684	58.153	57.606	58.413	-0.0172					49	29	2	0	0	0	0.25066	1	14154	14154		11.64	4.9171	1	534560			46935	9939	26974	26975	57271	57271					-0.07210486425083218
SYIAAISARF	10	Unmodified	_SYIAAISARF_					0	0	0		CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.80029296875	2	549.800749	1097.58694	0.68414	0.00037614	-0.95352	-0.00052424	-0.26937	-0.0001481	549.8001139071949	60.539	0.65547	60.539	60.281	60.936	0					54	21	3	0	0	0	0.0027997	1	14824	14824		104.48	73.216	1	2746900			46936	241	26975	26976	57272	57272					0.04205431851596586
SYIAHLRQL	9	Unmodified	_SYIAHLRQL_					0	0	0		ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.8143310546875	2	550.81419	1099.61383	0.24349	0.00013412	0.37956	0.00020907	0.62305	0.00034319	550.8140662393722	40.911	1.0252	40.911	40.388	41.413	0					91	37	4	0	0	0	0.00014042	2	8783	8733;8783		134.3	0	1	2658900			46937	7080	26976	26977	57273;57274	57274					0.06800540462791105
SYIAHLRQL	9	Unmodified	_SYIAHLRQL_					0	0	0		ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.287353515625	2	550.81419	1099.61383	0.031864	1.7551E-05	0.22274	0.00012269	0.25461	0.00014024	550.8141785190594	39.328	0.4306	39.328	39.189	39.62	0					25	15	2	0	0	0	0.15943	1	8319	8319		39.95	0	1	154860			46938	7080	26976	26977	57275	57275					0.06800540462791105
SYIAHLRQL	9	Unmodified	_SYIAHLRQL_					0	0	0		ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.814208984375	2	550.81419	1099.61383	0.60149	0.00033131	-0.26394	-0.00014538	0.33756	0.00018593	550.8139336389092	40.531	0.90946	40.623	40.228	41.138	0.092674					94	33	4	0	0	0	0.0010463	2	8688	8640;8688		122.18	0	1	3303600			46939	7080	26976	26977	57276;57277	57277					0.06800540462791105
SYIAHLRQL	9	Unmodified	_SYIAHLRQL_					0	0	0		ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.287353515625	2	550.81419	1099.61383	0.2486	0.00013693	0.07661	4.2198E-05	0.32521	0.00017913	550.8144706301464	39.182	0.39182	39.275	39.105	39.497	0.09267					22	13	2	0	0	0	0.17242	1	8278	8278		36.127	0	1	167330			46940	7080	26976	26977	57278	57278					0.06800540462791105
SYIAHLRQL	9	Unmodified	_SYIAHLRQL_					0	0	0		ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.8143310546875	2	550.81419	1099.61383	0.45239	0.00024918	-0.12565	-6.9208E-05	0.32675	0.00017998	550.813987775357	40.516	0.84181	40.615	40.201	41.043	0.099407					83	30	4	0	0	0	0.0042138	2	8613	8613;8661		92.653	0	1	3728700			46941	7080	26976	26977	57279;57280	57279					0.06800540462791105
SYIAHLRQL	9	Unmodified	_SYIAHLRQL_					0	0	0		ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.287353515625	2	550.81419	1099.61383	0.48209	0.00026554	-0.30293	-0.00016686	0.17916	9.8685E-05	550.8140899019595	39.159	0.38301	39.259	39.128	39.511	0.099407					20	13	2	0	0	0	0.15943	1	8260	8260		39.95	0	1	162630			46942	7080	26976	26977	57281	57281					0.06800540462791105
SYIALPLTL	9	Unmodified	_SYIALPLTL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.79833984375	2	495.797143	989.579734	0.55925	0.00027728	-0.12587	-6.2408E-05	0.43338	0.00021487	495.7977034923291	87.935	2.2823	87.935	87.609	89.891	0					352	124	5	0	0	0	4.5012E-11	6	23218	23175;23218;23261;23305;23348;23389		188.58	124.34	1	36262000			46943	1820	26977	26978	57282;57283;57284;57285;57286;57287	57283					0.0845269925117691
SYIALPLTL	9	Unmodified	_SYIALPLTL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7489013671875	2	495.797143	989.579734	0.4009	0.00019876	0.7456	0.00036967	1.1465	0.00056843	495.79713857485024	68.105	0.51976	68.105	67.809	68.329	0					38	18	3	0	0	0	0.090484	1	17136	17136		54.774	18.729	1	272500			46944	1820	26977	26978	57288	57288					0.0845269925117691
SYIALPLTL	9	Unmodified	_SYIALPLTL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7974853515625	2	495.797143	989.579734	0.4718	0.00023392	-0.050829	-2.5201E-05	0.42097	0.00020872	495.797684077404	87.844	2.1954	87.933	87.578	89.773	0.089203					373	116	6	0	0	0	5.6213E-07	7	23126	23085;23126;23170;23215;23257;23306;23352		158.2	112.18	1	30806000			46945	1820	26977	26978	57289;57290;57291;57292;57293;57294;57295	57290					0.0845269925117691
SYIALPLTL	9	Unmodified	_SYIALPLTL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7488098144531	2	495.797143	989.579734	0.46558	0.00023083	0.37349	0.00018517	0.83907	0.00041601	495.79707826232476	68.023	0.4454	68.101	67.864	68.31	0.078041					29	15	2	0	0	0	0.090484	1	17110	17110		54.774	31.625	1	430380			46946	1820	26977	26978	57296	57296					0.0845269925117691
SYIALPLTL	9	Unmodified	_SYIALPLTL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7977294921875	2	495.797143	989.579734	0.44746	0.00022185	-0.0081029	-4.0174E-06	0.43935	0.00021783	495.7976246991667	87.943	2.6348	87.94	87.584	90.219	-0.0028381					375	156	6	0	0	0	1.8535E-07	7	23245	23115;23155;23199;23245;23289;23331;23374		172.91	118.13	1	29090000			46947	1820	26977	26978	57297;57298;57299;57300;57301;57302;57303	57300					0.0845269925117691
SYIALPLTL	9	Unmodified	_SYIALPLTL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7489013671875	2	495.797143	989.579734	0.38951	0.00019312	0.68688	0.00034055	1.0764	0.00053367	495.79720859758834	68.083	0.64285	68.067	67.644	68.287	-0.016296					37	22	2	0	0	0	0.090484	1	17129	17129		54.774	27.89	1	317130			46948	1820	26977	26978	57304	57304					0.0845269925117691
SYIAMDTEF	9	Unmodified	_SYIAMDTEF_					0	0	0		nc|ENSG00000155508|Q9UFF9-3|CNOT8;CNOT8|p.C256Wfs*12|1|0.2|ENSG00000155508|chr5:154875326-154875339|TGTGGGCGGCTCTA/-|frameshift_variant;ENSG00000155508|ENST00000285896|CNOT8	nc|ENSG00000155508|Q9UFF9-3|CNOT8	nc|ENSG00000155508|Q9UFF9-3|CNOT8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.786865234375	2	538.733883	1075.45321	0.59062	0.00031819	2.2558	0.0012153	2.8464	0.0015334	538.7353295393175	83.444	0.38583	83.521	83.352	83.738	0.077095					20	14	2	0	0	0	0.24311	1	21868	21868		16.942	2.3606	1	64402			46949	190	26978	26979	57305	57305					-0.08149595036252322
SYIDAFCII	9	Unmodified	_SYIDAFCII_					0	0	0		ENST00000257836.3_1_11:32852163-32858296:+|nuORF	ENST00000257836.3_1_11:32852163-32858296:+|nuORF	ENST00000257836.3_1_11:32852163-32858296:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7573852539062	2	522.757161	1043.49977	0.46027	0.00024061	-0.26236	-0.00013715	0.19792	0.00010346	522.7570597283737	70.213	0.72456	70.213	69.787	70.512	0					60	26	3	0	0	0	0.20344	1	17770	17770		23.148	2.2772	1	329240			46950	8940	26979	26980	57306	57306					-0.02024110414322422
SYIDAFCII	9	Unmodified	_SYIDAFCII_					0	0	0		ENST00000257836.3_1_11:32852163-32858296:+|nuORF	ENST00000257836.3_1_11:32852163-32858296:+|nuORF	ENST00000257836.3_1_11:32852163-32858296:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.757161	1043.49977	0.45345	0.00023705	-0.078544	-4.106E-05	0.37491	0.00019599	522.7571057676869	70.193	0.74774	70.171	69.804	70.552	-0.022087	-0.038021	0.00010698	NaN	23.148	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373790			46951	8940	26979	26980							-0.02024110414322422
SYIDLLQRF	9	Unmodified	_SYIDLLQRF_					0	0	0		ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.8143310546875	2	577.813856	1153.61316	0.22981	0.00013279	0.27956	0.00016153	0.50937	0.00029432	577.8138960205047	75.278	0.69722	75.278	75.097	75.794	0					62	24	4	0	0	0	0.00078391	2	19329	19329;19377		125.53	95.689	1	579680			46952	3330	26980	26981	57307;57308	57307					0.04249701023104535
SYIDLLQRF	9	Unmodified	_SYIDLLQRF_					0	0	0		ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.81396484375	2	577.813856	1153.61316	0.3743	0.00021628	0.16937	9.7862E-05	0.54367	0.00031414	577.8137702830883	75.259	0.57136	75.311	75.102	75.673	0.052361					56	20	4	0	0	0	4.3881E-05	2	19323	19323;19374		149.91	113.79	1	664910			46953	3330	26980	26981	57309;57310	57309					0.04249701023104535
SYIDLLQRF	9	Unmodified	_SYIDLLQRF_					0	0	0		ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.8140869140625	2	577.813856	1153.61316	0.45252	0.00026147	-0.16074	-9.2876E-05	0.29178	0.0001686	577.8136725831095	75.368	0.60841	75.336	75.109	75.718	-0.031487					64	22	4	0	0	0	4.3881E-05	1	19343	19343		149.91	108.07	1	770330			46954	3330	26980	26981	57311	57311					0.04249701023104535
SYIDVLPEF	9	Unmodified	_SYIDVLPEF_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7742309570312	2	541.773865	1081.53318	0.66824	0.00036203	0.018013	9.7588E-06	0.68625	0.00037179	541.7738568065682	85.904	1.8651	85.904	85.228	87.093	0					181	72	4	0	0	0	1.8535E-07	5	22616	22565;22616;22660;22707;22754		172.91	105.56	1	9315500			46955	2042	26981	26982	57312;57313;57314;57315;57316	57313					-0.004327853707536633
SYIDVLPEF	9	Unmodified	_SYIDVLPEF_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.774169921875	2	541.773865	1081.53318	0.64277	0.00034824	-0.0076388	-4.1385E-06	0.63513	0.0003441	541.7738313779893	85.821	1.3583	85.905	85.367	86.725	0.084251					164	52	4	0	0	0	5.6213E-07	6	22563	22474;22514;22563;22612;22659;22709		158.2	90.859	1	7630000			46956	2042	26981	26982	57317;57318;57319;57320;57321;57322	57319					-0.004327853707536633
SYIDVLPEF	9	Unmodified	_SYIDVLPEF_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.774169921875	2	541.773865	1081.53318	0.74684	0.00040462	-0.090195	-4.8865E-05	0.65664	0.00035575	541.7738250705191	85.929	2.232	85.92	84.818	87.05	-0.0090027					198	86	4	0	0	0	5.6213E-07	5	22552	22552;22594;22639;22687;22733		158.2	93.966	1	9105600			46957	2042	26981	26982	57323;57324;57325;57326;57327	57323					-0.004327853707536633
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7930297851562	2	575.792589	1149.57063	0.27893	0.00016061	0.046322	2.6672E-05	0.32526	0.00018728	575.793517039162	71.477	3.5265	71.477	71.128	74.654	0					447	125	6	0	0	0	1.0901E-16	13	18293	18154;18199;18249;18293;18344;18395;18444;18494;18762;18815;18870;18951;19031		214.14	139.71	1	153450000			46958	5606	26982	26983	57328;57329;57330;57331;57332;57333;57334;57335;57336;57337;57338;57339;57340	57331					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.79296875	2	575.792589	1149.57063	0.29595	0.00017041	-0.01998	-1.1504E-05	0.27597	0.0001589	575.7926007767312	74.953	2.2459	74.953	74.566	76.812	0					171	80	3	0	0	0	0.0042343	7	19215	19215;19328;19406;19460;19508;19681;19734		92.491	63.41	1	953170			46959	5606	26982	26983	57341;57342;57343;57344;57345;57346;57347	57341					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.79248046875	2	575.792589	1149.57063	0.4015	0.00023118	-1.1927	-0.00068672	-0.79116	-0.00045554	575.7924969032447	86.832	2.5044	86.832	85.366	87.87	0					160	104	2	0	0	0	0.22188	1	23039	23039		20.454	9.6541	1	310940			46960	5606	26982	26983	57348	57348					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.2931518554688	2	575.792589	1149.57063	0.22423	0.00012911	-0.95236	-0.00054836	-0.72813	-0.00041925	576.2927703632358	91.268	0.2309	91.268	91.215	91.446	0					28	17	2	0	0	0	0.17787	1	24275	24275		26.884	7.6267	1	129400			46961	5606	26982	26983	57349	57349					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8429565429688	2	575.792589	1149.57063	0.20053	0.00011546	-1.7463	-0.0010055	-1.5458	-0.00089007	575.7921878950443	81.144	0.32307	81.144	80.979	81.302	0					16	13	2	0	0	0	0.2451	1	21147	21147		15.847	10.55	1	112100			46962	5606	26982	26983	57350	57350					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8433227539062	2	575.792589	1149.57063	0.45879	0.00026417	-1.6117	-0.00092801	-1.1529	-0.00066385	576.2926693475773	84.699	1.2288	84.699	84.137	85.366	0					69	46	2	0	0	0	0.21389	1	22069	22069		19.257	11.101	1	303830			46963	5606	26982	26983	57351	57351					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8433227539062	2	575.792589	1149.57063	0.49398	0.00028443	-0.040078	-2.3076E-05	0.45391	0.00026136	575.7931076339488	83.828	0.5784	83.828	83.455	84.033	0					30	22	2	0	0	0	0.24688	1	21839	21839		10.074	1.9184	1	107120			46964	5606	26982	26983	57352	57352					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7924194335938	2	575.792589	1149.57063	0.3479	0.00020032	-0.10685	-6.1523E-05	0.24105	0.0001388	575.7934379854753	71.412	3.594	71.469	71.113	74.707	0.05658					397	128	6	0	0	0	9.0063E-24	13	18096	18096;18145;18191;18197;18245;18288;18329;18371;18411;18459;18505;18922;19068		232.51	161.38	1	161550000			46965	5606	26982	26983	57353;57354;57355;57356;57357;57358;57359;57360;57361;57362;57363;57364;57365	57353					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7930297851562	2	575.792589	1149.57063	0.35142	0.00020235	-0.087017	-5.0103E-05	0.26441	0.00015224	575.7925224586577	74.95	1.9521	75.003	74.236	76.188	0.052368					147	70	3	0	0	0	0.006189	5	19175	19015;19175;19422;19481;19529		85.272	49.186	1	1212900			46966	5606	26982	26983	57366;57367;57368;57369;57370	57367					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7923583984375	2	575.792589	1149.57063	0.52263	0.00030093	-0.92366	-0.00053184	-0.40103	-0.00023091	575.7923512889006	78.753	0.82155	78.811	78.528	79.35	0.058151					48	35	2	0	0	0	0.16283	1	20450	20450		29.082	8.628	1	241020			46967	5606	26982	26983	57371	57371					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7927856445312	2	575.792589	1149.57063	0.40967	0.00023588	-1.0701	-0.00061614	-0.66041	-0.00038026	575.792525175573	86.639	2.3368	86.725	86.054	88.391	0.085495					147	107	2	0	0	0	0.23007	1	23004	23004		19.257	7.0163	1	309840			46968	5606	26982	26983	57372	57372					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.2921142578125	2	575.792589	1149.57063	0.41339	0.00023803	-1.9378	-0.0011158	-1.5244	-0.00087775	576.2922105492244	88.537	1.445	88.626	87.908	89.353	0.089195					91	67	2	0	0	0	0.18803	2	23532	23516;23532		25.399	10.561	1	220280			46969	5606	26982	26983	57373;57374	57374					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.843505859375	2	575.792589	1149.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.828	1	90.919	90.419	91.419	0.090668								0	0	0	0.16757	1	24082	24082		30.637	12.49	1				46970	5606	26982	26983	57375	57375					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7916259765625	2	575.792589	1149.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.4	1	115.38	114.88	115.88	-0.020988								0	0	0	0.24715	1	29930	29930		7.2892	0.18751	1				46971	5606	26982	26983	57376	57376					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8441772460938	2	575.792589	1149.57063	0.35815	0.00020622	-2.4049	-0.0013847	-2.0467	-0.0011785	576.2919557185352	91.182	0.43211	91.273	91.154	91.586	0.090668					52	32	2	0	0	0	0.2322	1	24239	24239		20.454	6.0482	1	459590			46972	5606	26982	26983	57377	57377					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8430786132812	2	575.792589	1149.57063	0.49568	0.00028541	-1.4162	-0.00081543	-0.9205	-0.00053002	575.79225424473	85.557	0.68592	85.639	85.365	86.051	0.082573					42	25	2	0	0	0	0.1939	1	22581	22581		30.637	15.388	1	122130			46973	5606	26982	26983	57378	57378					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8433837890625	2	575.792589	1149.57063	0.5546	0.00031934	-1.1549	-0.000665	-0.60033	-0.00034567	576.2927077908816	84.188	0.56194	84.265	83.998	84.56	0.077095					31	22	2	0	0	0	0.23784	1	22066	22066		13.906	9.15	1	152300			46974	5606	26982	26983	57379	57379					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8432006835938	2	575.792589	1149.57063	0.12517	7.2072E-05	-0.82655	-0.00047592	-0.70138	-0.00040385	576.2935645013432	110.73	0.03878	110.71	110.68	110.72	-0.013939					6	5	2	0	0	0	0.24688	1	28867	28867		14.838	7.7366	1	100500			46975	5606	26982	26983	57380	57380					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7930908203125	2	575.792589	1149.57063	0.33672	0.00019388	0.012794	7.3669E-06	0.34952	0.00020125	575.7934948190853	71.581	3.4042	71.554	71.185	74.589	-0.027275					396	122	6	0	0	0	9.0063E-24	12	18300	18164;18212;18252;18300;18344;18393;18446;18532;18887;18973;19041;19099		232.51	158.09	1	199280000			46976	5606	26982	26983	57381;57382;57383;57384;57385;57386;57387;57388;57389;57390;57391;57392	57384					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7933959960938	2	575.792589	1149.57063	0.44511	0.00025629	-0.2007	-0.00011556	0.24441	0.00014073	575.7924288113526	75.025	2.5425	74.993	74.557	77.1	-0.031487					189	93	3	0	0	0	0.0083926	5	19170	19170;19318;19397;19449;19547		81.89	52.809	1	1103400			46977	5606	26982	26983	57393;57394;57395;57396;57397	57393					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7926025390625	2	575.792589	1149.57063	0.37037	0.00021326	-1.2197	-0.00070231	-0.84936	-0.00048906	576.2927684510015	86.826	2.7026	86.82	85.677	88.379	-0.0056229					191	120	2	0	0	0	0.18803	1	23071	23071		25.399	13.905	1	334720			46978	5606	26982	26983	57398	57398					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2921142578125	2	575.792589	1149.57063	0.4009	0.00023084	-2.5694	-0.0014794	-2.1685	-0.0012486	576.291932201687	91.257	0.63297	91.258	91.152	91.785	0.00046539					66	43	2	0	0	0	0.18803	2	24260	24199;24260		25.399	10.151	1	613920			46979	5606	26982	26983	57399;57400	57400					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7921752929688	2	575.792589	1149.57063	0.18851	0.00010854	-0.97103	-0.00055911	-0.78252	-0.00045057	576.2933139329818	111.73	0.27708	111.75	111.7	111.98	0.0131					49	32	2	0	0	0	0.28674	1	29093	29093		10.824	5.9269	1	78653			46980	5606	26982	26983	57401	57401					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7930297851562	2	575.792589	1149.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.18	1	112.19	111.69	112.69	0.0131								0	0	0	0.2362	1	29201	29201		10.824	0.024421	1				46981	5606	26982	26983	57402	57402					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8433227539062	2	575.792589	1149.57063	0.31997	0.00018423	-1.483	-0.00085391	-1.163	-0.00066968	576.2924366928643	88.572	1.4224	88.569	87.898	89.321	-0.0028381					84	64	2	0	0	0	0.1524	1	23537	23537		32.305	11.891	1	273870			46982	5606	26982	26983	57403	57403					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.843505859375	2	575.792589	1149.57063	0.44627	0.00025696	-0.38419	-0.00022121	0.062085	3.5748E-05	576.2929847509774	83.824	0.80128	83.808	83.246	84.047	-0.016823					50	35	2	0	0	0	0.23784	1	21977	21977		13.906	5.3128	1	327220			46983	5606	26982	26983	57404	57404					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8430786132812	2	575.792589	1149.57063	0.25805	0.00014859	0.45174	0.00026011	0.70979	0.00040869	575.7935345587059	81.742	0.79421	81.718	81.263	82.058	-0.02404					53	33	2	0	0	0	0.2322	1	21240	21240		14.838	6.245	1	172880			46984	5606	26982	26983	57405	57405					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	575.792589	1149.57063	-0.17735	-0.00010212	-0.099208	-5.7123E-05	-0.27656	-0.00015924	576.2940664715375	110.86	0.06398	110.86	110.83	110.89	0	0.074643	0.0003539	NaN	14.838	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85839			46985	5606	26982	26983							0.0018230589485028759
SYIELPAYL	9	Unmodified	_SYIELPAYL_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7841186523438	2	534.784233	1067.55391	0.66309	0.00035461	-0.37597	-0.00020106	0.28712	0.00015354	534.7839278226716	82.766	1.4583	82.766	82.358	83.817	0					146	54	4	0	0	0	1.576E-05	3	21633	21587;21633;21677		154.46	90.227	1	4892600			46986	5577	26983	26984	57406;57407;57408	57407					0.02283805008892159
SYIELPAYL	9	Unmodified	_SYIELPAYL_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7841796875	2	534.784233	1067.55391	0.41611	0.00022253	-0.10005	-5.3508E-05	0.31605	0.00016902	534.7840488468624	82.659	1.3411	82.733	82.353	83.694	0.073097					140	51	5	0	0	0	1.576E-05	4	21583	21535;21583;21631;21680		154.46	90.227	1	5279600			46987	5577	26983	26984	57409;57410;57411;57412	57410					0.02283805008892159
SYIELPAYL	9	Unmodified	_SYIELPAYL_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7844848632812	2	534.784233	1067.55391	0.60739	0.00032482	-0.37455	-0.0002003	0.23284	0.00012452	534.7838518059206	82.764	1.464	82.744	82.369	83.833	-0.020584					170	59	4	0	0	0	1.576E-05	4	21572	21572;21619;21669;21717		154.46	90.227	1	5561500			46988	5577	26983	26984	57413;57414;57415;57416	57413					0.02283805008892159
SYIEVSHGL	9	Unmodified	_SYIEVSHGL_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2;nc|ENSG00000172403|Q9UMS6-5|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.2718200683594	2	502.756007	1003.49746	0.46627	0.00023442	0.44737	0.00022492	0.91363	0.00045934	502.7562321445839	44.707	0.32355	44.776	44.599	44.922	0.068573					24	11	3	0	0	0	0.11461	1	9893	9893		36.127	17.981	1	256600			46989	6632	26984	26985	57417	57417					-0.004148228277585986
SYIEVSHGL	9	Unmodified	_SYIEVSHGL_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2;nc|ENSG00000172403|Q9UMS6-5|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.31304931640625	2	502.756007	1003.49746	0.50398	0.00025338	0.86297	0.00043386	1.367	0.00068724	502.756383833937	44.651	0.57026	44.726	44.531	45.101	0.075047					29	20	2	0	0	0	0.11397	1	9911	9911		41.84	19.103	1	226600			46990	6632	26984	26985	57418	57418					-0.004148228277585986
SYIFFSYF	8	Unmodified	_SYIFFSYF_					0	0	0			REV__Tigger18a_dup645|chr8:104380158-104380805:+|1.292872140011521|0.333793443753661|1.95|513.0|24|3|sense	REV__Tigger18a_dup645|chr8:104380158-104380805:+|1.292872140011521|0.333793443753661|1.95|513.0|24|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2526245117188	2	537.252569	1072.49058	0.11763	6.3195E-05	0.24013	0.00012901	0.35776	0.00019221	537.2526123715057	81.088	0.84346	81.153	80.883	81.726	0.065094					93	41	3	0	0	0	0.23581	2	21110	21110;21156		38.151	38.151	1	545970	+		46991	23335	26985	26986	57419;57420	57419					-0.042761357083463736
SYIFFSYF	8	Unmodified	_SYIFFSYF_					0	0	0			REV__Tigger18a_dup645|chr8:104380158-104380805:+|1.292872140011521|0.333793443753661|1.95|513.0|24|3|sense	REV__Tigger18a_dup645|chr8:104380158-104380805:+|1.292872140011521|0.333793443753661|1.95|513.0|24|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2528076171875	2	537.252569	1072.49058	0.4973	0.00026718	-0.073768	-3.9632E-05	0.42353	0.00022755	537.2524434249221	81.245	0.71658	81.221	80.941	81.658	-0.024048					72	31	3	0	0	0	0.19197	1	21146	21146		44.407	2.3125	1	643540	+		46992	23335	26985	26986	57421	57421					-0.042761357083463736
SYIFQKIS	8	Unmodified	_SYIFQKIS_					0	0	0		ENSG00000162641|ENST00000370001|AKNAD1;nc|ENSG00000162641|Q5T1N1-3|AKNAD1;nc|ENSG00000162641|Q5T1N1-4|AKNAD1;nc|ENSG00000162641|Q5T1N1-2|AKNAD1	ENSG00000162641|ENST00000370001|AKNAD1	ENSG00000162641|ENST00000370001|AKNAD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.81353759765625	2	493.271293	984.528032	0.64498	0.00031815	-0.077865	-3.8409E-05	0.56712	0.00027974	493.2711332003515	54.65	0.72189	54.634	54.361	55.083	-0.015923					60	25	3	0	0	0	0.29634	1	13074	13074		26.884	3.7352	1	2464300			46993	5592	26986	26987	57422	57422					0.035149555572729696
SYIGLPLTL	9	Unmodified	_SYIGLPLTL_					0	0	0		ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000540608.5_1_18:21119776-21166285:-|nuORF	ENSG00000141458|ENST00000269228|NPC1	ENSG00000141458|ENST00000269228|NPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7889709472656	2	488.789318	975.564084	0.36088	0.00017639	-0.30159	-0.00014741	0.059287	2.8979E-05	488.7891579827514	86.836	1.0126	86.923	86.63	87.643	0.08709					61	43	2	0	0	0	0.12743	1	22860	22860		30.637	5.2372	1	657650			46994	4383	26987	26988	57423	57423					0.075324127341446
SYIGLPLTL	9	Unmodified	_SYIGLPLTL_					0	0	0		ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000540608.5_1_18:21119776-21166285:-|nuORF	ENSG00000141458|ENST00000269228|NPC1	ENSG00000141458|ENST00000269228|NPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7892761230469	2	488.789318	975.564084	0.4492	0.00021956	0.12551	6.1348E-05	0.57471	0.00028091	488.7894331554194	87.008	0.9554	87.002	86.505	87.46	-0.0056229					77	39	3	0	0	0	0.10197	1	22886	22886		37.974	5.6685	1	785660			46995	4383	26987	26988	57424	57424					0.075324127341446
SYIHYVFRL	9	Unmodified	_SYIHYVFRL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.E1876Lfs*12|1|0.03|ENSG00000116641|chr1:62476133-62476134|-/GTGCAATTTTGTTTGAGAAAGA|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.8070068359375	2	599.324391	1196.63423	0.66936	0.00040116	0.16446	9.8564E-05	0.83382	0.00049973	599.3242529221098	58.168	0.62225	58.151	57.928	58.55	-0.017197					50	22	3	0	0	0	0.24289	1	14150	14150		18.146	5.1039	1	586200			46996	2734	26988	26989	57425	57425					0.0437771112262908
SYIHYVFRL	9	Unmodified	_SYIHYVFRL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.E1876Lfs*12|1|0.03|ENSG00000116641|chr1:62476133-62476134|-/GTGCAATTTTGTTTGAGAAAGA|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	599.324391	1196.63423	0.48771	0.00029229	0.091305	5.4721E-05	0.57901	0.00034702	599.3242793440858	58.046	0.70304	58.046	57.828	58.531	0	0.03032	-5.8248E-05	NaN	18.146	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402680			46997	2734	26988	26989							0.0437771112262908
SYIHYVFRL	9	Unmodified	_SYIHYVFRL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;DOCK7|p.E1876Lfs*12|1|0.03|ENSG00000116641|chr1:62476133-62476134|-/GTGCAATTTTGTTTGAGAAAGA|frameshift_variant	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	599.324391	1196.63423	0.52963	0.00031742	0.13247	7.9391E-05	0.6621	0.00039681	599.3242548037125	57.765	0.73791	57.851	57.598	58.336	0.085621	-0.16536	-8.9078E-06	NaN	18.146	50	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	486760			46998	2734	26988	26989							0.0437771112262908
SYIIPNVASN	10	Unmodified	_SYIIPNVASN_					0	0	0			REV__S1PR4|p.G325Vfs*30|1|0.09|ENSG00000125910|chr19:3179763-3179766|GCGG/-|frameshift_variant	REV__S1PR4|p.G325Vfs*30|1|0.09|ENSG00000125910|chr19:3179763-3179766|GCGG/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.302734375	2	539.282389	1076.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.69	1	89.781	89.281	90.281	0.090569								0	0	0	0.35421	1	23738	23738		13.042	2.9685	1		+		46999	15291	26989	26990	57426	57426					0.01501135235048423
SYIIPNVASN	10	Unmodified	_SYIIPNVASN_					0	0	0			REV__S1PR4|p.G325Vfs*30|1|0.09|ENSG00000125910|chr19:3179763-3179766|GCGG/-|frameshift_variant	REV__S1PR4|p.G325Vfs*30|1|0.09|ENSG00000125910|chr19:3179763-3179766|GCGG/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.3026733398438	2	539.282389	1076.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.218	1	90.309	89.809	90.809	0.090668								0	0	0	0.35421	1	23899	23899		13.042	2.2185	1		+		47000	15291	26989	26990	57427	57427					0.01501135235048423
SYIIPNVASN	10	Unmodified	_SYIIPNVASN_					0	0	0			REV__S1PR4|p.G325Vfs*30|1|0.09|ENSG00000125910|chr19:3179763-3179766|GCGG/-|frameshift_variant	REV__S1PR4|p.G325Vfs*30|1|0.09|ENSG00000125910|chr19:3179763-3179766|GCGG/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.3026733398438	2	539.282389	1076.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.437	1	90.438	89.938	90.938	0.0003891								0	0	0	0.34209	1	23960	23960		18.146	3.3081	1		+		47001	15291	26989	26990	57428	57428					0.01501135235048423
SYIKQHQKT	9	Unmodified	_SYIKQHQKT_					0	0	0			REV__ENSG00000196652|ENST00000326775|ZKSCAN5	REV__ENSG00000196652|ENST00000326775|ZKSCAN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3267822265625	2	566.809105	1131.60366	0.70336	0.00039867	1.0942	0.00062019	1.7975	0.0010189	566.8097481576337	50.041	1.5238	50.086	49.593	51.117	0.044891					137	56	4	0	0	0	0.22674	1	11799	11799		22.736	10.205	1	6492100	+		47002	18672	26990	26991	57429	57429					0.043119327375507055
SYIKQHQKT	9	Unmodified	_SYIKQHQKT_					0	0	0			REV__ENSG00000196652|ENST00000326775|ZKSCAN5	REV__ENSG00000196652|ENST00000326775|ZKSCAN5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3268432617188	2	566.809105	1131.60366	0.62319	0.00035323	1.3739	0.00077874	1.9971	0.001132	566.8098730145291	50.1	1.5949	50.121	49.511	51.106	0.020691					158	59	4	0	0	0	0.12642	1	11808	11808		34.402	15.145	1	6205200	+		47003	18672	26990	26991	57430	57430					0.043119327375507055
SYILDTLVF	9	Unmodified	_SYILDTLVF_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.79248046875	2	535.792058	1069.56956	0.44945	0.00024081	0.40916	0.00021923	0.85862	0.00046004	535.7921267920412	91.955	0.82173	91.955	91.673	92.495	0					141	56	3	0	0	0	0.0042343	3	24444	24398;24444;24484		92.491	58.389	1	475380			47004	1995	26991	26992	57431;57432;57433	57432					0.03756091525951888
SYILDTLVF	9	Unmodified	_SYILDTLVF_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7922973632812	2	535.792058	1069.56956	0.34054	0.00018246	0.36449	0.00019529	0.70503	0.00037775	535.7922380412889	91.847	0.92514	91.937	91.57	92.495	0.090668					123	56	3	0	0	0	0.0015545	3	24393	24353;24393;24435		115.69	73.597	1	666000			47005	1995	26991	26992	57434;57435;57436	57435					0.03756091525951888
SYILDTLVF	9	Unmodified	_SYILDTLVF_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.79248046875	2	535.792058	1069.56956	0.64091	0.00034339	0.095622	5.1233E-05	0.73653	0.00039463	535.7920198579188	91.937	1.2424	91.938	91.347	92.589	0.00047302					126	59	3	0	0	0	0.0015545	3	24426	24378;24426;24473		115.69	79.565	1	819360			47006	1995	26991	26992	57437;57438;57439	57438					0.03756091525951888
SYILRPVAF	9	Unmodified	_SYILRPVAF_					0	0	0		ENSG00000156222|ENST00000394573|SLC28A1	ENSG00000156222|ENST00000394573|SLC28A1	ENSG00000156222|ENST00000394573|SLC28A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.308837890625	2	533.30821	1064.60187	0.42913	0.00022886	0.90684	0.00048363	1.336	0.00071249	533.308416176478	61.911	3.5626	61.911	61.537	65.1	0					332	131	4	0	0	0	0.0019475	3	15242	15171;15242;15291		110.67	45.542	1	16590000			47007	5225	26992	26993	57440;57441;57442	57441					0.07214923719607214
SYILRPVAF	9	Unmodified	_SYILRPVAF_					0	0	0		ENSG00000156222|ENST00000394573|SLC28A1	ENSG00000156222|ENST00000394573|SLC28A1	ENSG00000156222|ENST00000394573|SLC28A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.30859375	2	533.30821	1064.60187	-0.01438	-7.6691E-06	1.1652	0.00062141	1.1508	0.00061374	533.3086421472041	61.813	2.7668	61.91	61.408	64.174	0.096989					259	100	5	0	0	0	0.003317	3	15160	15129;15160;15206		99.755	47.487	1	17212000			47008	5225	26992	26993	57443;57444;57445	57444					0.07214923719607214
SYILRPVAF	9	Unmodified	_SYILRPVAF_					0	0	0		ENSG00000156222|ENST00000394573|SLC28A1	ENSG00000156222|ENST00000394573|SLC28A1	ENSG00000156222|ENST00000394573|SLC28A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7634887695312	2	533.30821	1064.60187	0.50631	0.00027002	-0.12827	-6.8405E-05	0.37804	0.00020161	533.3083548152568	64.489	0.65201	64.582	64.334	64.986	0.09288					29	23	2	0	0	0	0.17242	1	16000	16000		36.127	15.673	1	115120			47009	5225	26992	26993	57446	57446					0.07214923719607214
SYILRPVAF	9	Unmodified	_SYILRPVAF_					0	0	0		ENSG00000156222|ENST00000394573|SLC28A1	ENSG00000156222|ENST00000394573|SLC28A1	ENSG00000156222|ENST00000394573|SLC28A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3087768554688	2	533.30821	1064.60187	0.24893	0.00013275	0.86809	0.00046296	1.117	0.00059571	533.3084904481067	61.872	2.9906	61.864	61.425	64.416	-0.0085526					236	109	3	0	0	0	0.003317	2	15231	15231;15282		99.755	47.487	1	17448000			47010	5225	26992	26993	57447;57448	57447					0.07214923719607214
SYILRPVAF	9	Unmodified	_SYILRPVAF_					0	0	0		ENSG00000156222|ENST00000394573|SLC28A1	ENSG00000156222|ENST00000394573|SLC28A1	ENSG00000156222|ENST00000394573|SLC28A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7984008789062	2	533.30821	1064.60187	0.64454	0.00034374	-0.01835	-9.7861E-06	0.62619	0.00033395	533.3081202204953	64.328	0.95891	64.319	63.99	64.948	-0.0095291					48	34	2	0	0	0	0.1939	1	15897	15897		30.637	12.49	1	130800			47011	5225	26992	26993	57449	57449					0.07214923719607214
SYILYHLLE	9	Unmodified	_SYILYHLLE_					0	0	0		nc|ENSG00000159267|P50747|HLCS;ENSG00000159267|ENST00000674895|HLCS	nc|ENSG00000159267|P50747|HLCS	nc|ENSG00000159267|P50747|HLCS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7922973632812	2	575.810782	1149.60701	0.34433	0.00019827	-1.2381	-0.00071292	-0.89378	-0.00051465	575.8099213961901	73.162	0.54823	73.133	72.927	73.476	-0.029305					31	19	3	0	0	0	0.25314	1	18767	18767		15.847	0	1	88882			47012	5398	26993	26994	57450	57450					0.038191827915625254
SYIMLNLMP	9	Unmodified	_SYIMLNLMP_					0	0	0			REV__ENSG00000174914|ENST00000642097|OR9G1	REV__ENSG00000174914|ENST00000642097|OR9G1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7899169921875	2	541.274664	1080.53477	0.67577	0.00036578	2.0126	0.0010894	2.6884	0.0014551	541.2755846723257	75.051	0.38543	75.051	74.821	75.206	0					19	13	2	0	0	0	0.25431	1	19209	19209		9.3831	5.0539	1	186710	+		47013	17860	26994	26995	57451	57451					-0.0022719087803579896
SYIMLNLMP	9	Unmodified	_SYIMLNLMP_					0	0	0			REV__ENSG00000174914|ENST00000642097|OR9G1	REV__ENSG00000174914|ENST00000642097|OR9G1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	541.274664	1080.53477	0.52768	0.00028562	0.45866	0.00024826	0.98633	0.00053388	541.2757922365167	74.954	0.43609	75.007	74.782	75.218	0.052368	-0.037548	-0.0016753	NaN	9.3831	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169670	+		47014	17860	26994	26995							-0.0022719087803579896
SYIMLNLMP	9	Unmodified	_SYIMLNLMP_					0	0	0			REV__ENSG00000174914|ENST00000642097|OR9G1	REV__ENSG00000174914|ENST00000642097|OR9G1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.274664	1080.53477	0.85304	0.00046173	2.2684	0.0012278	3.1214	0.0016895	541.2757024465855	75.107	0.33907	75.075	74.868	75.207	-0.031487	0.030883	0.00028383	NaN	9.3831	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174400	+		47015	17860	26994	26995							-0.0022719087803579896
SYINELRTF	9	Unmodified	_SYINELRTF_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7954711914062	2	571.795663	1141.57677	0.34186	0.00019547	-0.59685	-0.00034128	-0.25499	-0.0001458	571.7952828299614	56.945	0.66376	56.945	56.61	57.273	0					51	23	3	0	0	0	0.0031966	1	13701	13701		100.71	58.869	1	674040			47016	1868	26995	26996	57452	57452					0.011648241263856107
SYINELRTF	9	Unmodified	_SYINELRTF_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.7950439453125	2	571.795663	1141.57677	0.47234	0.00027008	-0.9209	-0.00052657	-0.44856	-0.00025649	571.7949714830308	56.736	0.60468	56.815	56.628	57.233	0.078674					35	22	2	0	0	0	0.0014939	1	13648	13648		121.35	71.413	1	782630			47017	1868	26995	26996	57453	57453					0.011648241263856107
SYINELRTF	9	Unmodified	_SYINELRTF_					0	0	0		ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	ENSG00000104133|ENST00000261866|SPG11	ENSG00000104133|ENST00000261866|SPG11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7953491210938	2	571.795663	1141.57677	0.2393	0.00013683	-0.34285	-0.00019604	-0.10356	-5.9213E-05	571.7953356471818	57.11	0.60295	57.091	56.892	57.495	-0.019077					43	21	3	0	0	0	0.003929	1	13773	13773		94.909	56.733	1	759710			47018	1868	26995	26996	57454	57454					0.011648241263856107
SYINPDHLKYF	11	Unmodified	_SYINPDHLKYF_					0	0	0		nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7652282714844	3	466.23471	1395.6823	0.32243	0.00015033	-0.099618	-4.6445E-05	0.22281	0.00010388	466.2346776448919	53.034	0.38731	53.09	52.913	53.3	0.056259					20	13	2	0	0	0	0.33169	1	12534	12534		6.2344	2.0449	1	369720			47019	1116	26996	26997	57455	57455					0.0002874025196888397
SYINYVITM	9	Oxidation (M)	_SYINYVITM(Oxidation (M))_		SYINYVITM(1)		SYINYVITM(140)	0	0	1		NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.L1448*|1|0.12|ENSG00000144426|chr2:203136636-203136636|T/-|frameshift_variant;ENST00000478884.5_1_2:203881095-203927086:+|nuORF	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2734985351562	2	560.273175	1118.5318	0.52289	0.00029296	-2.267	-0.0012701	-1.7441	-0.00097716	560.2731589783893	64.307	1.1869	64.307	63.889	65.076	0					148	43	5	0	0	0	0.00010125	2	16004	15956;16004		140.63	92.884	1	2194300			47020	4584	26997	26998	57456;57457	57457		579			-0.022727427312020154
SYINYVITM	9	Oxidation (M)	_SYINYVITM(Oxidation (M))_		SYINYVITM(1)		SYINYVITM(140)	0	0	1		NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.L1448*|1|0.12|ENSG00000144426|chr2:203136636-203136636|T/-|frameshift_variant;ENST00000478884.5_1_2:203881095-203927086:+|nuORF	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.273681640625	2	560.273175	1118.5318	0.50442	0.00028261	-1.7558	-0.00098374	-1.2514	-0.00070112	560.2732150707927	64.225	1.1681	64.318	63.794	64.962	0.09288					123	42	4	0	0	0	0.00010125	2	15966	15921;15966		140.63	84.456	1	2091800			47021	4584	26997	26998	57458;57459	57459		579			-0.022727427312020154
SYINYVITM	9	Oxidation (M)	_SYINYVITM(Oxidation (M))_		SYINYVITM(1)		SYINYVITM(140)	0	0	1		NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.L1448*|1|0.12|ENSG00000144426|chr2:203136636-203136636|T/-|frameshift_variant;ENST00000478884.5_1_2:203881095-203927086:+|nuORF	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2734375	2	560.273175	1118.5318	0.46057	0.00025804	-1.9235	-0.0010777	-1.463	-0.00081965	560.2732043710241	64.372	1.0678	64.362	63.881	64.948	-0.0095291					102	38	3	0	0	0	0.00010125	2	15999	15954;15999		140.63	92.884	1	1866800			47022	4584	26997	26998	57460;57461	57461		579			-0.022727427312020154
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3029174804688	2	539.302593	1076.59063	0.54032	0.0002914	0.16862	9.0938E-05	0.70894	0.00038233	539.302536886199	90.088	1.5361	90.088	89.41	90.946	0					277	100	4	0	0	0	0.0042138	5	23857	23818;23857;23894;23937;23977		92.653	0	1	2534900			47023	6018	26998	26999	57462;57463;57464;57465;57466	57463					0.0554010162547911
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3026733398438	2	539.302593	1076.59063	0.4495	0.00024242	0.54666	0.00029481	0.99616	0.00053723	539.3025136208632	91.795	1.0303	91.795	91.527	92.557	0					133	74	3	0	0	0	0.063853	3	24384	24346;24384;24424		47.749	0	1	804260			47024	6018	26998	26999	57467;57468;57469	57468					0.0554010162547911
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.3029174804688	2	539.302593	1076.59063	0.49847	0.00026883	0.17505	9.4404E-05	0.67352	0.00036323	539.3025833879618	89.96	1.1561	90.051	89.637	90.793	0.090668					245	90	4	0	0	0	0.0028626	3	23777	23777;23815;23853		103.35	0	1	3667300			47025	6018	26998	26999	57470;57471;57472	57470					0.0554010162547911
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.302734375	2	539.302593	1076.59063	0.44728	0.00024122	0.099079	5.3434E-05	0.54636	0.00029465	539.3024996123039	91.654	0.62263	91.745	91.406	92.029	0.090675					111	43	3	0	0	0	0.063853	4	24362	24275;24317;24362;24403		47.749	0	1	808820			47026	6018	26998	26999	57473;57474;57475;57476	57475					0.0554010162547911
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.3027954101562	2	539.302593	1076.59063	0.64373	0.00034717	0.2029	0.00010942	0.84663	0.00045659	539.3024942711744	90.054	1.3592	90.054	89.568	90.927	0.0003891					300	111	4	0	0	0	0.0023784	5	23876	23746;23801;23839;23876;23917		107.19	0	1	3977400			47027	6018	26998	26999	57477;57478;57479;57480;57481	57480					0.0554010162547911
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.3026123046875	2	539.302593	1076.59063	0.69182	0.0003731	0.42665	0.00023009	1.1185	0.0006032	539.3028389024984	91.814	0.99387	91.815	91.481	92.475	0.00047302					131	68	3	0	0	0	0.014888	5	24397	24316;24356;24397;24444;24490		71.922	0	1	1113600			47028	6018	26998	26999	57482;57483;57484;57485;57486	57484					0.0554010162547911
SYIPSTVFF	9	Unmodified	_SYIPSTVFF_					0	0	0		ENSG00000140830|ENST00000268483|TXNL4B	ENSG00000140830|ENST00000268483|TXNL4B	ENSG00000140830|ENST00000268483|TXNL4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7710571289062	2	530.771126	1059.5277	0.71308	0.00037848	-0.50756	-0.0002694	0.20553	0.00010909	530.7707987184909	83.003	1.6205	83.003	82.287	83.908	0					180	61	4	0	0	0	5.6754E-05	4	21691	21643;21691;21735;21785		147.83	93.058	1	4999000			47029	4337	26999	27000	57487;57488;57489;57490	57488					0.00031535837410956447
SYIPSTVFF	9	Unmodified	_SYIPSTVFF_					0	0	0		ENSG00000140830|ENST00000268483|TXNL4B	ENSG00000140830|ENST00000268483|TXNL4B	ENSG00000140830|ENST00000268483|TXNL4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7709350585938	2	530.771126	1059.5277	0.51075	0.00027109	-0.32331	-0.0001716	0.18744	9.9488E-05	530.7709076006573	82.871	1.4031	82.944	82.546	83.949	0.073097					167	52	4	0	0	0	0.00056175	5	21604	21604;21655;21703;21757;21814		128.37	81.445	1	5300100			47030	4337	26999	27000	57491;57492;57493;57494;57495	57491					0.00031535837410956447
SYIPSTVFF	9	Unmodified	_SYIPSTVFF_					0	0	0		ENSG00000140830|ENST00000268483|TXNL4B	ENSG00000140830|ENST00000268483|TXNL4B	ENSG00000140830|ENST00000268483|TXNL4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7713623046875	2	530.771126	1059.5277	0.64861	0.00034426	-0.40231	-0.00021353	0.2463	0.00013073	530.7708705211979	82.985	1.3151	82.965	82.596	83.911	-0.020584					192	54	4	0	0	0	9.3868E-05	4	21730	21634;21682;21730;21772		141.83	94.906	1	5809700			47031	4337	26999	27000	57496;57497;57498;57499	57498					0.00031535837410956447
SYIPTLSSF	9	Unmodified	_SYIPTLSSF_					0	0	0		ENSG00000179630|ENST00000325686|LACC1	ENSG00000179630|ENST00000325686|LACC1	ENSG00000179630|ENST00000325686|LACC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.8027648925781	2	507.760758	1013.50696	0.043266	2.1969E-05	0.51432	0.00026115	0.55759	0.00028312	507.76094321904907	75.939	0.71756	75.939	75.565	76.283	0					66	25	4	0	0	0	0.24688	1	19437	19437		14.838	0	1	1025200			47032	7135	27000	27001	57500	57500					0.0007494545776580708
SYIPTLSSF	9	Unmodified	_SYIPTLSSF_					0	0	0		ENSG00000179630|ENST00000325686|LACC1	ENSG00000179630|ENST00000325686|LACC1	ENSG00000179630|ENST00000325686|LACC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.760758	1013.50696	0.26831	0.00013624	0.43035	0.00021852	0.69866	0.00035475	507.7607870002617	75.891	0.62785	75.859	75.588	76.216	-0.031487	-0.030192	-5.6733E-05	NaN	20.454	59	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	874650			47033	7135	27000	27001							0.0007494545776580708
SYIQDAFQL	9	Unmodified	_SYIQDAFQL_					0	0	0		ENSG00000055147|ENST00000351797|FAM114A2;ENST00000518946.1_1_5:153372538-153374550:-|nuORF	ENSG00000055147|ENST00000351797|FAM114A2	ENSG00000055147|ENST00000351797|FAM114A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3108520507812	2	542.769114	1083.52368	0.55267	0.00029997	0.029891	1.6224E-05	0.58256	0.0003162	542.7692061606556	74.891	0.43073	74.943	74.671	75.102	0.052361					27	15	2	0	0	0	0.067514	1	19232	19232		69.338	40.851	1	207450			47034	701	27001	27002	57501	57501					-0.014745536562941197
SYIQDAFQL	9	Unmodified	_SYIQDAFQL_					0	0	0		ENSG00000055147|ENST00000351797|FAM114A2;ENST00000518946.1_1_5:153372538-153374550:-|nuORF	ENSG00000055147|ENST00000351797|FAM114A2	ENSG00000055147|ENST00000351797|FAM114A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3108520507812	2	542.769114	1083.52368	0.87825	0.00047669	0.021415	1.1624E-05	0.89966	0.00048831	542.769202486508	74.943	0.53564	74.912	74.7	75.235	-0.031487					31	19	2	0	0	0	0.13946	1	19238	19238		47.732	27.278	1	211580			47035	701	27001	27002	57502	57502					-0.014745536562941197
SYIQRLVQI	9	Unmodified	_SYIQRLVQI_					0	0	0		SAMHD1|p.Y155Mfs*15|1|0.24|ENSG00000101347|chr20:36935075-36935075|A/-|frameshift_variant;nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1	SAMHD1|p.Y155Mfs*15|1|0.24|ENSG00000101347|chr20:36935075-36935075|A/-|frameshift_variant	SAMHD1|p.Y155Mfs*15|1|0.24|ENSG00000101347|chr20:36935075-36935075|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.32958984375	2	560.329673	1118.64479	-0.12702	-7.1172E-05	0.35891	0.00020111	0.23189	0.00012993	560.3296797845857	60.077	0.59427	60.077	59.819	60.413	0					56	21	3	0	0	0	0.001957	2	14691	14646;14691		110.55	58.284	1	3179000			47036	1688	27002	27003	57503;57504	57504					0.09021693777026485
SYIQRLVQI	9	Unmodified	_SYIQRLVQI_					0	0	0		SAMHD1|p.Y155Mfs*15|1|0.24|ENSG00000101347|chr20:36935075-36935075|A/-|frameshift_variant;nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1	SAMHD1|p.Y155Mfs*15|1|0.24|ENSG00000101347|chr20:36935075-36935075|A/-|frameshift_variant	SAMHD1|p.Y155Mfs*15|1|0.24|ENSG00000101347|chr20:36935075-36935075|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3300170898438	2	560.329673	1118.64479	-0.32012	-0.00017937	0.56539	0.00031681	0.24528	0.00013744	560.3297851444694	59.962	0.75963	60.057	59.741	60.501	0.095089					64	27	3	0	0	0	0.0045319	2	14605	14605;14648		90.135	48.179	1	3126600			47037	1688	27002	27003	57505;57506	57505					0.09021693777026485
SYIQRLVQI	9	Unmodified	_SYIQRLVQI_					0	0	0		SAMHD1|p.Y155Mfs*15|1|0.24|ENSG00000101347|chr20:36935075-36935075|A/-|frameshift_variant;nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1	SAMHD1|p.Y155Mfs*15|1|0.24|ENSG00000101347|chr20:36935075-36935075|A/-|frameshift_variant	SAMHD1|p.Y155Mfs*15|1|0.24|ENSG00000101347|chr20:36935075-36935075|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.3298950195312	2	560.329673	1118.64479	0.08006	4.486E-05	0.014847	8.3194E-06	0.094907	5.3179E-05	560.3294833465982	60.069	0.86568	60.058	59.813	60.679	-0.011486					72	30	4	0	0	0	0.001957	2	14638	14638;14703		110.55	52.831	1	2908700			47038	1688	27002	27003	57507;57508	57507					0.09021693777026485
SYIRHWDQ	8	Unmodified	_SYIRHWDQ_					0	0	0		ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-5|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2	ENSG00000168003|ENST00000338663|SLC3A2	ENSG00000168003|ENST00000338663|SLC3A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.7531127929688	2	552.764697	1103.51484	0.54753	0.00030266	1.1787	0.00065154	1.7262	0.0009542	552.765675732657	85.947	1.0229	85.947	85.256	86.279	0					69	38	3	0	0	0	0.28696	3	22578	22578;22587;22649		32.305	14.171	1	790840			47039	6233	27003	27004	57509;57510;57511	57509					-0.03277482502107887
SYIRHWDQ	8	Unmodified	_SYIRHWDQ_					0	0	0		ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-5|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2	ENSG00000168003|ENST00000338663|SLC3A2	ENSG00000168003|ENST00000338663|SLC3A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.7533569335938	2	552.764697	1103.51484	0.50787	0.00028073	1.0346	0.00057189	1.5425	0.00085262	552.7656829077388	85.851	1.0343	85.936	85.542	86.576	0.084251					90	39	4	0	0	0	0.28696	4	22541	22524;22541;22573;22588		32.305	6.0373	1	665730			47040	6233	27003	27004	57512;57513;57514;57515	57513					-0.03277482502107887
SYIRHWDQ	8	Unmodified	_SYIRHWDQ_					0	0	0		ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-5|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2	ENSG00000168003|ENST00000338663|SLC3A2	ENSG00000168003|ENST00000338663|SLC3A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.765869140625	2	552.764697	1103.51484	0.51891	0.00028683	0.93764	0.0005183	1.4566	0.00080513	552.7655428291109	85.944	1.1269	85.935	85.327	86.454	-0.0090027					84	42	3	0	0	0	0.32038	2	22598	22581;22598		28.487	2.2187	1	695310			47041	6233	27003	27004	57516;57517	57517					-0.03277482502107887
SYISRTNQL	9	Unmodified	_SYISRTNQL_					0	0	0		AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2857055664062	2	541.285463	1080.55637	0.79586	0.00043079	0.17123	9.2685E-05	0.96709	0.00052347	541.2854361092451	34.088	0.89035	34.088	33.728	34.618	0					71	27	4	0	0	0	0.0011116	1	6646	6646		121.35	59.744	1	1360600			47042	22	27004	27005	57518	57518					0.01931653466544958
SYISRTNQL	9	Unmodified	_SYISRTNQL_					0	0	0		AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2858276367188	2	541.285463	1080.55637	1.0378	0.00056176	-0.084612	-4.5799E-05	0.95321	0.00051596	541.2852928130695	33.888	0.88967	33.955	33.624	34.513	0.06636					85	31	4	0	0	0	0.0019382	1	6608	6608		110.79	49.191	1	1417500			47043	22	27004	27005	57519	57519					0.01931653466544958
SYISRTNQL	9	Unmodified	_SYISRTNQL_					0	0	0		AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant;ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2857055664062	2	541.285463	1080.55637	0.41694	0.00022568	0.45762	0.0002477	0.87456	0.00047339	541.2855730285472	33.897	0.77647	33.964	33.657	34.434	0.0667					79	27	4	0	0	0	0.0019382	1	6587	6587		110.79	57.389	1	1390200			47044	22	27004	27005	57520	57520					0.01931653466544958
SYITRVGTF	9	Unmodified	_SYITRVGTF_					0	0	0		ENSG00000160401|ENST00000373295|CFAP157	ENSG00000160401|ENST00000373295|CFAP157	ENSG00000160401|ENST00000373295|CFAP157	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3287353515625	2	522.279649	1042.54475	0.60832	0.00031771	1.2568	0.0006564	1.8651	0.00097411	522.2804494235567	88.19	0.78344	88.19	87.951	88.735	0					56	39	2	0	0	0	0.22596	1	23289	23289		21.747	2.3076	1	292370			47045	5463	27005	27006	57521	57521					0.025174564432290936
SYITSVIHD	9	Unmodified	_SYITSVIHD_					0	0	0			REV__ENSG00000179097|ENST00000319595|HTR1F	REV__ENSG00000179097|ENST00000319595|HTR1F	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.781005859375	2	517.761289	1033.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.14	1	84.14	83.64	84.64	0								0	0	0	0.12743	1	22043	22043		39.957	3.9131	1		+		47046	18062	27006	27007	57522	57522					-0.007388401733351202
SYITSVIHD	9	Unmodified	_SYITSVIHD_					0	0	0			REV__ENSG00000179097|ENST00000319595|HTR1F	REV__ENSG00000179097|ENST00000319595|HTR1F	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7805786132812	2	517.761289	1033.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.348	1	84.348	83.848	84.848	0								0	0	0	0.20639	1	22107	22107		20.454	5.6154	1		+		47047	18062	27006	27007	57523	57523					-0.007388401733351202
SYITSVIHD	9	Unmodified	_SYITSVIHD_					0	0	0			REV__ENSG00000179097|ENST00000319595|HTR1F	REV__ENSG00000179097|ENST00000319595|HTR1F	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.781005859375	2	517.761289	1033.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.049	1	84.126	83.626	84.626	0.077095								0	0	0	0.12743	1	22009	22009		39.957	3.9131	1		+		47048	18062	27006	27007	57524	57524					-0.007388401733351202
SYIVFADYI	9	Unmodified	_SYIVFADYI_					0	0	0			REV__nc|ENSG00000136869|O00206-3|TLR4	REV__nc|ENSG00000136869|O00206-3|TLR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3167724609375	2	545.776408	1089.53826	0.62563	0.00034145	0.48949	0.00026715	1.1151	0.00060861	545.7760675250781	82.673	0.51736	82.673	82.513	83.03	0					40	18	3	0	0	0	0.14961	1	21617	21617		41.84	16.44	1	204270	+		47049	15833	27007	27008	57525	57525					-0.002924815081541965
SYIVFADYI	9	Unmodified	_SYIVFADYI_					0	0	0			REV__nc|ENSG00000136869|O00206-3|TLR4	REV__nc|ENSG00000136869|O00206-3|TLR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3167114257812	2	545.776408	1089.53826	0.67382	0.00036776	0.14325	7.818E-05	0.81707	0.00044594	545.7764330973752	82.701	0.57545	82.774	82.452	83.028	0.073097					48	22	3	0	0	0	0.14961	1	21586	21586		34.402	18.555	1	273120	+		47050	15833	27007	27008	57526	57526					-0.002924815081541965
SYIVFADYI	9	Unmodified	_SYIVFADYI_					0	0	0			REV__nc|ENSG00000136869|O00206-3|TLR4	REV__nc|ENSG00000136869|O00206-3|TLR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.7755737304688	2	545.776408	1089.53826	0.72237	0.00039425	-0.37454	-0.00020442	0.34782	0.00018983	545.7756915515142	82.796	0.51127	82.776	82.541	83.053	-0.020584					48	19	3	0	0	0	0.057976	1	21640	21640		49.933	24.534	1	244450	+		47051	15833	27007	27008	57527	57527					-0.002924815081541965
SYIVFADYI	9	Unmodified	_SYIVFADYI_					0	0	0			REV__nc|ENSG00000136869|O00206-3|TLR4	REV__nc|ENSG00000136869|O00206-3|TLR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.316650390625	2	545.776408	1089.53826	0.72237	0.00039425	-0.37454	-0.00020442	0.34782	0.00018983	545.7756915515142	82.796	0.51127	82.776	82.541	83.053	-0.020584					48	19	3	0	0	0	0.14961	1	21620	21620		41.84	16.44	1	244450	+		47052	15833	27007	27008	57528	57528					-0.002924815081541965
SYIYARICI	9	Unmodified	_SYIYARICI_					0	0	0		ENST00000309042.11_1_4:57799202-57799397:+|nuORF	ENST00000309042.11_1_4:57799202-57799397:+|nuORF	ENST00000309042.11_1_4:57799202-57799397:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.3005981445312	2	551.291702	1100.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.824	1	60.815	60.315	61.315	-0.0094566								0	0	0	0.19932	1	14893	14893		22.736	2.2827	1				47053	9300	27008	27009	57529	57529					0.022589736052395892
SYKNGFLNL	9	Unmodified	_SYKNGFLNL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2799682617188	2	528.279649	1054.54475	0.87328	0.00046134	-0.046348	-2.4485E-05	0.82693	0.00043685	528.2794905341517	54.881	0.85576	54.881	54.626	55.482	0					69	31	3	0	0	0	0.00051734	2	13082	13037;13082		128.93	76.664	1	2666900			47054	3533	27009	27010	57530;57531	57531					0.0196545644323578
SYKNGFLNL	9	Unmodified	_SYKNGFLNL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.27978515625	2	528.279649	1054.54475	0.72555	0.00038329	-0.036588	-1.9329E-05	0.68896	0.00036396	528.2795157929977	54.832	0.84877	54.896	54.566	55.415	0.063202					80	31	4	0	0	0	0.0028032	1	13054	13054		103.82	55.478	1	3345000			47055	3533	27009	27010	57532	57532					0.0196545644323578
SYKNGFLNL	9	Unmodified	_SYKNGFLNL_					0	0	0		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2801513671875	2	528.279649	1054.54475	0.75131	0.0003969	0.091927	4.8563E-05	0.84324	0.00044547	528.2795591276101	55.11	0.80396	55.091	54.761	55.565	-0.019077					69	29	3	0	0	0	0.0008224	2	13150	13103;13150		125.04	76.692	1	3385200			47056	3533	27009	27010	57533;57534	57534					0.0196545644323578
SYLAKSSSCNI	11	Unmodified	_SYLAKSSSCNI_					0	0	0			REV__nc|ENSG00000259092|A0A087WSZ9|TRAV30	REV__nc|ENSG00000259092|A0A087WSZ9|TRAV30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.7842407226562	2	586.784438	1171.55432	0.28357	0.00016639	0.31746	0.00018628	0.60103	0.00035267	586.7848101288556	71.434	0.81485	71.49	71.269	72.084	0.056572					46	29	2	0	0	0	0.30708	1	18158	18158		21.59	3.4438	1	1011300	+		47057	23224	27010	27011	57535	57535					-0.02459143333544489
SYLARHQI	8	Unmodified	_SYLARHQI_					0	0	0		nc|ENSG00000167554|Q8N9Z0-2|ZNF610;ENSG00000167554|ENST00000403906|ZNF610	nc|ENSG00000167554|Q8N9Z0-2|ZNF610	nc|ENSG00000167554|Q8N9Z0-2|ZNF610	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7562561035156	2	494.272158	986.529764	0.41393	0.00020459	0.11827	5.8458E-05	0.5322	0.00026305	494.2722737274323	19.755	0.4952	19.639	19.405	19.9	-0.11592					27	16	2	0	0	0	0.344	1	2410	2410		2.5775	0	1	36582			47058	6188	27011	27012	57536	57536					0.03596009365901409
SYLDQELTTF	10	Unmodified	_SYLDQELTTF_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.7385864257812	2	608.790244	1215.56593	0.78786	0.00047964	-1.2914	-0.00078618	-0.50351	-0.00030653	609.2909816683574	74.67	0.44841	74.67	74.537	74.985	0					21	15	2	0	0	0	0.18866	1	19152	19152		75.571	42.785	1	381490			47059	2780	27012	27013	57537	57537					-0.033226230385935196
SYLDQELTTF	10	Unmodified	_SYLDQELTTF_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.7894897460938	2	608.790244	1215.56593	0.39556	0.00024081	-1.1462	-0.00069781	-0.75066	-0.00045699	608.7896213497535	74.666	0.43568	74.719	74.429	74.865	0.052361					25	14	2	0	0	0	0.0082636	1	19117	19117		84.522	58.254	1	308960			47060	2780	27012	27013	57538	57538					-0.033226230385935196
SYLDQELTTF	10	Unmodified	_SYLDQELTTF_					0	0	0		nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	nc|ENSG00000117155|Q9Y2D8-2|SSX2IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.7886962890625	2	608.790244	1215.56593	0.53794	0.00032749	-1.215	-0.00073971	-0.67711	-0.00041221	608.7895471315678	74.677	0.55888	74.645	74.5	75.059	-0.031479					31	19	2	0	0	0	0.016475	1	19145	19145		75.571	42.785	1	396300			47061	2780	27012	27013	57539	57539					-0.033226230385935196
SYLDQVKLQF	10	Unmodified	_SYLDQVKLQF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.83203125	2	620.832246	1239.64994	0.097239	6.0369E-05	0.0094999	5.8979E-06	0.10674	6.6267E-05	620.8319955190387	69.397	0.6646	69.397	69.123	69.787	0					52	23	3	0	0	0	0.030447	1	17518	17518		117.84	101.69	1	945310			47062	6352	27013	27014	57540	57540					0.039699528490018565
SYLDQVKLQF	10	Unmodified	_SYLDQVKLQF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.8323364257812	2	620.832246	1239.64994	0.012269	7.6167E-06	0.31349	0.00019463	0.32576	0.00020224	620.8320963999531	69.397	0.6783	69.463	69.178	69.856	0.06604					54	23	3	0	0	0	0.009863	1	17511	17511		139.78	107	1	621780			47063	6352	27013	27014	57541	57541					0.039699528490018565
SYLDQVKLQF	10	Unmodified	_SYLDQVKLQF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.8321533203125	2	620.832246	1239.64994	0.088125	5.4711E-05	0.097094	6.0279E-05	0.18522	0.00011499	620.8320852403307	69.467	0.65067	69.445	69.181	69.832	-0.022079					63	23	4	0	0	0	0.00042009	1	17570	17570		128.57	90.397	1	896710			47064	6352	27013	27014	57542	57542					0.039699528490018565
SYLDRTEQL	9	Unmodified	_SYLDRTEQL_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.783447265625	2	562.782753	1123.55095	0.26594	0.00014967	0.34523	0.00019429	0.61118	0.00034396	562.7829482543632	43.133	0.65206	43.133	42.842	43.494	0					40	23	2	0	0	0	0.0047555	1	9436	9436		88.364	57.095	1	1210200			47065	810	27014	27015	57543	57543					-0.005880701158957891
SYLDRTEQL	9	Unmodified	_SYLDRTEQL_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.7826538085938	2	562.782753	1123.55095	0.26929	0.00015155	-0.0872	-4.9075E-05	0.18209	0.00010247	562.7827973220205	42.763	0.76383	42.849	42.591	43.355	0.085201					45	27	2	0	0	0	0.0023309	1	9319	9319		107.56	51.386	1	1268900			47066	810	27014	27015	57544	57544					-0.005880701158957891
SYLDRTEQL	9	Unmodified	_SYLDRTEQL_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.7827758789062	2	562.782753	1123.55095	0.073665	4.1457E-05	0.081118	4.5652E-05	0.15478	8.7109E-05	562.7828906332271	42.676	0.59537	42.768	42.527	43.123	0.091362					42	21	2	0	0	0	0.0013864	1	9300	9300		117.84	73.979	1	1171500			47067	810	27014	27015	57545	57545					-0.005880701158957891
SYLDSVHFF	9	Unmodified	_SYLDSVHFF_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7640380859375	2	557.763832	1113.51311	0.37676	0.00021014	-0.05159	-2.8775E-05	0.32517	0.00018137	557.7639016437633	72.066	0.83939	72.066	71.773	72.613	0					70	30	3	0	0	0	0.006189	1	18398	18398		85.272	52.967	1	1276500			47068	1586	27015	27016	57546	57546					-0.03910536310718271
SYLDSVHFF	9	Unmodified	_SYLDSVHFF_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7639770507812	2	557.763832	1113.51311	0.45241	0.00025234	-0.126	-7.028E-05	0.32641	0.00018206	557.7637731315032	71.997	0.65362	72.054	71.783	72.436	0.056572					60	23	3	0	0	0	0.0028127	1	18325	18325		103.75	69.646	1	1250000			47069	1586	27015	27016	57547	57547					-0.03910536310718271
SYLDSVHFF	9	Unmodified	_SYLDSVHFF_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7640991210938	2	557.763832	1113.51311	0.3455	0.00019271	-0.084304	-4.7022E-05	0.26119	0.00014568	557.7637893712847	72.13	0.86678	72.103	71.819	72.686	-0.027267					70	30	4	0	0	0	0.0015545	1	18348	18348		115.69	81.59	1	1395600			47070	1586	27015	27016	57548	57548					-0.03910536310718271
SYLDVKQR	8	Unmodified	_SYLDVKQR_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.29248046875	2	504.777274	1007.53999	0.5909	0.00029828	0.82497	0.00041642	1.4159	0.0007147	504.77905907931716	60.955	0.55741	60.955	60.495	61.052	0					27	19	2	0	0	0	0.34092	1	14883	14883		13.508	0	1	608420			47071	5802	27016	27017	57549	57549					0.036525723004729116
SYLEDTEHI	9	Unmodified	_SYLEDTEHI_					0	0	0		nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;UNC80|p.G758Lfs*13|1|0.04|ENSG00000144406|chr2:209820618-209820619|-/ATTA|frameshift_variant;UNC80|p.G757Vfs*14|1|0.06|ENSG00000144406|chr2:209820617-209820618|-/TCAT|frameshift_variant	nc|ENSG00000144406|Q8N2C7-7|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.2504272460938	2	553.753661	1105.49277	0.48291	0.00026742	-2.3412	-0.0012965	-1.8583	-0.0010291	553.7529564202778	85.793	0.91253	85.877	85.567	86.479	0.084251					59	34	2	0	0	0	0.17787	1	22648	22648		26.884	0	1	765930			47072	4582	27017	27018	57550	57550					-0.055757517611937146
SYLEKQVVTF	10	Unmodified	_SYLEKQVVTF_					0	0	0		ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	ENSG00000018699|ENST00000317907|TTC27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.7840576171875	2	607.326796	1212.63904	0.69398	0.00042147	-3.9453	-0.0023961	-3.2514	-0.0019746	607.3240612770977	54.257	0.65995	54.257	54.076	54.736	0					55	23	3	0	0	0	0.28683	1	12880	12880		28.234	10.791	1	1214400			47073	497	27018	27019	57551	57551					0.04122550474698983
SYLELANTL	9	Unmodified	_SYLELANTL_					0	0	0		ENSG00000171444|ENST00000408903|MCC	ENSG00000171444|ENST00000408903|MCC	ENSG00000171444|ENST00000408903|MCC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2717895507812	2	512.27149	1022.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.532	1	71.532	71.032	72.032	0								0	0	0	0.081574	1	18188	18188		51.415	23.786	1				47074	6540	27019	27020	57552	57552					0.01806330486465413
SYLELANTL	9	Unmodified	_SYLELANTL_					0	0	0		ENSG00000171444|ENST00000408903|MCC	ENSG00000171444|ENST00000408903|MCC	ENSG00000171444|ENST00000408903|MCC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2953491210938	2	512.27149	1022.52843	0.25954	0.00013296	-1.6591	-0.00084989	-1.3995	-0.00071694	512.2712702995967	71.546	0.49305	71.603	71.375	71.868	0.056572					32	17	3	0	0	0	0.22143	1	18116	18116		19.362	4.1135	1	254200			47075	6540	27019	27020	57553	57553					0.01806330486465413
SYLENVDHF	9	Unmodified	_SYLENVDHF_					0	0	0		nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2;CAMTA2|p.V1054Pfs*43|1|0.05|ENSG00000108509|chr17:4969932-4969933|-/GGATGGC|frameshift_variant;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2	nc|ENSG00000108509|O94983-6|CAMTA2	nc|ENSG00000108509|O94983-6|CAMTA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.2565307617188	2	562.256371	1122.49819	0.33984	0.00019107	-0.16167	-9.09E-05	0.17816	0.00010017	562.2561469524014	52.563	0.60561	52.563	52.354	52.96	0					68	21	4	0	0	0	1.6153E-16	3	12368	12319;12368;12409		208.15	175.84	1	3508300			47076	12642	27020	27021	57554;57555;57556	57555					-0.058160281787195345
SYLENVDHF	9	Unmodified	_SYLENVDHF_					0	0	0		nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2;CAMTA2|p.V1054Pfs*43|1|0.05|ENSG00000108509|chr17:4969932-4969933|-/GGATGGC|frameshift_variant;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2	nc|ENSG00000108509|O94983-6|CAMTA2	nc|ENSG00000108509|O94983-6|CAMTA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.256591796875	2	562.256371	1122.49819	0.4494	0.00025268	-0.19809	-0.00011138	0.25131	0.0001413	562.2560839451138	52.496	0.77959	52.547	52.228	53.008	0.050575					79	28	4	0	0	0	3.0646E-11	3	12337	12289;12337;12391		193.29	160.99	1	3134300			47077	12642	27020	27021	57557;57558;57559	57558					-0.058160281787195345
SYLENVDHF	9	Unmodified	_SYLENVDHF_					0	0	0		nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2;CAMTA2|p.V1054Pfs*43|1|0.05|ENSG00000108509|chr17:4969932-4969933|-/GGATGGC|frameshift_variant;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2	nc|ENSG00000108509|O94983-6|CAMTA2	nc|ENSG00000108509|O94983-6|CAMTA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.2564086914062	2	562.256371	1122.49819	0.22019	0.0001238	0.023895	1.3435E-05	0.24408	0.00013724	562.2562159838441	52.721	0.81853	52.72	52.332	53.151	-0.00081253					70	22	4	0	0	0	1.6153E-16	3	12425	12379;12425;12473		208.15	175.84	1	3157000			47078	12642	27020	27021	57560;57561;57562	57561					-0.058160281787195345
SYLEQLREL	9	Unmodified	_SYLEQLREL_					0	0	0			REV__ENSG00000144824|ENST00000431670|PHLDB2	REV__ENSG00000144824|ENST00000431670|PHLDB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7926025390625	2	575.808771	1149.60299	0.24478	0.00014095	2.2058	0.0012701	2.4506	0.0014111	576.3114284380576	73.08	0.39801	73.08	72.909	73.307	0					19	13	2	0	0	0	0.21303	1	18713	18713		21.747	1.293	1	110190	+		47079	16264	27021	27022	57563	57563					0.034170932978668134
SYLEQLREL	9	Unmodified	_SYLEQLREL_					0	0	0			REV__ENSG00000144824|ENST00000431670|PHLDB2	REV__ENSG00000144824|ENST00000431670|PHLDB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7928466796875	2	575.808771	1149.60299	0.24478	0.00014095	2.2058	0.0012701	2.4506	0.0014111	576.3114284380576	73.08	0.39801	73.08	72.909	73.307	0					19	13	2	0	0	0	0.22596	1	18664	18664		21.747	9.2151	1	110190	+		47080	16264	27021	27022	57564	57564					0.034170932978668134
SYLERYQRF	9	Unmodified	_SYLERYQRF_					0	0	0		nc|ENSG00000061938|Q07912|TNK2;nc|ENSG00000061938|Q07912-3|TNK2;ENSG00000061938|ENST00000672887|TNK2;ENST00000420716.2_1_3:195591054-195595875:-|nuORF	nc|ENSG00000061938|Q07912|TNK2	nc|ENSG00000061938|Q07912|TNK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.8963928222656	3	421.21565	1260.62512	0.17062	7.1868E-05	-0.38671	-0.00016289	-0.21609	-9.102E-05	421.2154398820484	40.669	0.41982	40.762	40.585	41.005	0.09267					33	15	3	0	0	0	0.2991	1	8684	8684		8.9762	1.0308	1	285360			47081	763	27022	27023	57565	57565					0.005233177662603339
SYLERYQRF	9	Unmodified	_SYLERYQRF_					0	0	0		nc|ENSG00000061938|Q07912|TNK2;nc|ENSG00000061938|Q07912-3|TNK2;ENSG00000061938|ENST00000672887|TNK2;ENST00000420716.2_1_3:195591054-195595875:-|nuORF	nc|ENSG00000061938|Q07912|TNK2	nc|ENSG00000061938|Q07912|TNK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.9151306152344	3	421.21565	1260.62512	0.039237	1.6527E-05	-0.3899	-0.00016423	-0.35067	-0.00014771	421.2154980100301	40.638	0.48315	40.737	40.479	40.962	0.099407					29	17	2	0	0	0	0.25049	1	8693	8693		13.615	11.116	1	372100			47082	763	27022	27023	57566	57566					0.005233177662603339
SYLESFYHM	9	Oxidation (M)	_SYLESFYHM(Oxidation (M))_		SYLESFYHM(1)		SYLESFYHM(190)	0	0	1		ENST00000515387.1_1_5:96239260-96245469:+|nuORF;ENST00000513084.5_1_5:96237218-96245469:+|nuORF;nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2	ENST00000515387.1_1_5:96239260-96245469:+|nuORF	ENST00000515387.1_1_5:96239260-96245469:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.7534790039062	2	596.752607	1191.49066	0.80209	0.00047865	0.36037	0.00021505	1.1625	0.0006937	596.7528259478523	54.576	0.92988	54.576	54.268	55.198	0					49	33	2	0	0	0	4.6984E-11	2	12947	12947;12991		187.93	168.67	1	4548300			47083	5827	27023	27024	57567;57568	57567		689			-0.09742503770667099
SYLESFYHM	9	Oxidation (M)	_SYLESFYHM(Oxidation (M))_		SYLESFYHM(1)		SYLESFYHM(190)	0	0	1		ENST00000515387.1_1_5:96239260-96245469:+|nuORF;ENST00000513084.5_1_5:96237218-96245469:+|nuORF;nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2	ENST00000515387.1_1_5:96239260-96245469:+|nuORF	ENST00000515387.1_1_5:96239260-96245469:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.7534790039062	2	596.752607	1191.49066	0.77183	0.00046059	0.15817	9.4387E-05	0.93	0.00055498	596.7528468562385	54.476	0.90858	54.539	54.272	55.181	0.063202					60	33	3	0	0	0	4.6984E-11	3	12918	12898;12918;12961		187.93	151.8	1	4866300			47084	5827	27023	27024	57569;57570;57571	57570		689			-0.09742503770667099
SYLESFYHM	9	Oxidation (M)	_SYLESFYHM(Oxidation (M))_		SYLESFYHM(1)		SYLESFYHM(170)	0	0	1		ENST00000515387.1_1_5:96239260-96245469:+|nuORF;ENST00000513084.5_1_5:96237218-96245469:+|nuORF;nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2	ENST00000515387.1_1_5:96239260-96245469:+|nuORF	ENST00000515387.1_1_5:96239260-96245469:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.75341796875	2	596.752607	1191.49066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.751	1	54.735	54.235	55.235	-0.015923								0	0	0	1.5518E-16	1	13017	13017		171.47	123.72	1				47085	5827	27023	27024	57572	57572		689			-0.09742503770667099
SYLESFYHM	9	Oxidation (M)	_SYLESFYHM(Oxidation (M))_		SYLESFYHM(1)		SYLESFYHM(190)	0	0	1		ENST00000515387.1_1_5:96239260-96245469:+|nuORF;ENST00000513084.5_1_5:96237218-96245469:+|nuORF;nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2	ENST00000515387.1_1_5:96239260-96245469:+|nuORF	ENST00000515387.1_1_5:96239260-96245469:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.7533569335938	2	596.752607	1191.49066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.911	1	54.895	54.395	55.395	-0.015923								0	0	0	5.9551E-24	1	13067	13067		187.93	140.18	1				47086	5827	27023	27024	57573	57573		689			-0.09742503770667099
SYLESFYHM	9	Oxidation (M)	_SYLESFYHM(Oxidation (M))_		SYLESFYHM(1)		SYLESFYHM(160)	0	0	1		ENST00000515387.1_1_5:96239260-96245469:+|nuORF;ENST00000513084.5_1_5:96237218-96245469:+|nuORF;nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2	ENST00000515387.1_1_5:96239260-96245469:+|nuORF	ENST00000515387.1_1_5:96239260-96245469:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.7530517578125	2	596.752607	1191.49066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.064	1	55.045	54.545	55.545	-0.019081								0	0	0	5.6091E-12	1	13116	13116		162.95	115.2	1				47087	5827	27023	27024	57574	57574		689			-0.09742503770667099
SYLFDQIGFL	10	Unmodified	_SYLFDQIGFL_					0	0	0			REV__nc|ENSG00000053770|Q9H0R1-2|AP5M1	REV__nc|ENSG00000053770|Q9H0R1-2|AP5M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8084106445312	2	601.808239	1201.60193	0.61854	0.00037224	-0.52405	-0.00031538	0.094496	5.6868E-05	601.8080491298982	74.485	1.4116	74.485	73.632	75.043	0					93	48	3	0	0	0	0.2811	1	19158	19158		22.736	1.1993	1	772990	+		47088	13580	27024	27025	57575	57575					0.009188789289510169
SYLFDQIGFL	10	Unmodified	_SYLFDQIGFL_					0	0	0			REV__nc|ENSG00000053770|Q9H0R1-2|AP5M1	REV__nc|ENSG00000053770|Q9H0R1-2|AP5M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.8090209960938	2	601.808239	1201.60193	0.4712	0.00028357	-0.35532	-0.00021383	0.11589	6.9741E-05	601.8081501541831	74.314	1.6664	74.367	73.578	75.244	0.052361					113	58	3	0	0	0	0.2811	1	19126	19126		22.736	1.1993	1	909440	+		47089	13580	27024	27025	57576	57576					0.009188789289510169
SYLFVRVLT	9	Unmodified	_SYLFVRVLT_					0	0	0			REV__ENSG00000160882|ENST00000292427|CYP11B1	REV__ENSG00000160882|ENST00000292427|CYP11B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3060913085938	2	549.321317	1096.62808	0.27132	0.00014904	-0.045679	-2.5093E-05	0.22564	0.00012395	549.3214070892059	67.136	0.43658	67.12	66.921	67.357	-0.016296					25	14	2	0	0	0	0.28128	1	16873	16873		11.64	0.81637	1	175740	+		47090	16921	27025	27026	57577	57577					0.08363192891079052
SYLGGVLTYL	10	Unmodified	_SYLGGVLTYL_					0	0	0			REV__ENSG00000115665|ENST00000264047|SLC5A7	REV__ENSG00000115665|ENST00000264047|SLC5A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3027954101562	2	543.297507	1084.58046	0.61201	0.0003325	0.045754	2.4858E-05	0.65776	0.00035736	543.298511033032	75.816	0.82047	75.784	75.342	76.163	-0.031487					64	29	3	0	0	0	0.12843	1	19408	19408		41.84	1.8823	1	893930	+		47091	14890	27026	27027	57578	57578					0.041554939002026
SYLHEPAVL	9	Unmodified	_SYLHEPAVL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A;MYO5C|p.T1715Hfs*13|1|0.04|ENSG00000128833|chr15:52193988-52193988|T/-|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;nc|ENSG00000128833|Q9NQX4-2|MYO5C	ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;MYO5C|p.T1715Hfs*13|1|0.04|ENSG00000128833|chr15:52193988-52193988|T/-|frameshift_variant	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.3114624023438	2	514.7742	1027.53385	0.21404	0.00011018	0.31304	0.00016114	0.52708	0.00027133	514.7742944812293	49.352	0.48485	49.397	49.184	49.669	0.044891					41	17	3	0	0	0	0.21905	1	11326	11326		16.942	5.302	1	773170			47092	6167;7973;3394	27027	27028	57579	57579					0.021180540689329064
SYLHEPAVL	9	Unmodified	_SYLHEPAVL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A;MYO5C|p.T1715Hfs*13|1|0.04|ENSG00000128833|chr15:52193988-52193988|T/-|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;nc|ENSG00000128833|Q9NQX4-2|MYO5C	ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;MYO5C|p.T1715Hfs*13|1|0.04|ENSG00000128833|chr15:52193988-52193988|T/-|frameshift_variant	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.3109741210938	2	514.7742	1027.53385	0.069756	3.5909E-05	0.48948	0.00025197	0.55924	0.00028788	514.7743707109904	49.316	0.58291	49.348	49.072	49.655	0.032043					46	20	3	0	0	0	0.24311	1	11295	11295		7.2892	3.3448	1	768800			47093	6167;7973;3394	27027	27028	57580	57580					0.021180540689329064
SYLHEPAVL	9	Unmodified	_SYLHEPAVL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A;MYO5C|p.T1715Hfs*13|1|0.04|ENSG00000128833|chr15:52193988-52193988|T/-|frameshift_variant;ENSG00000128833|ENST00000261839|MYO5C;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;nc|ENSG00000128833|Q9NQX4-2|MYO5C	ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;MYO5C|p.T1715Hfs*13|1|0.04|ENSG00000128833|chr15:52193988-52193988|T/-|frameshift_variant	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	514.7742	1027.53385	0.46753	0.00024067	0.10067	5.1824E-05	0.5682	0.0002925	514.7742529050905	49.331	0.6005	49.331	49.05	49.65	0	-0.02743	-0.00019289	NaN	21.747	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	690530			47094	6167;7973;3394	27027	27028							0.021180540689329064
SYLHEVFEF	9	Unmodified	_SYLHEVFEF_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.2254028320312	2	585.776939	1169.53933	0.33646	0.00019709	-1.3515	-0.00079167	-1.015	-0.00059458	585.7762575380403	67.933	0.45098	67.933	67.673	68.124	0					32	15	3	0	0	0	0.10135	1	17081	17081		52.268	52.268	1	315500			47095	787	27028	27029	57581	57581					-0.038662671392330594
SYLHEVFEF	9	Unmodified	_SYLHEVFEF_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.2252197265625	2	585.776939	1169.53933	0.41371	0.00024234	-1.6164	-0.00094686	-1.2027	-0.00070452	585.7759179793426	67.797	0.51134	67.875	67.657	68.169	0.078041					26	17	2	0	0	0	0.11486	1	17019	17019		48.346	22.947	1	341010			47096	787	27028	27029	57582	57582					-0.038662671392330594
SYLHEVFEF	9	Unmodified	_SYLHEVFEF_					0	0	0		ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.2252807617188	2	585.776939	1169.53933	0.34095	0.00019972	-1.5915	-0.00093229	-1.2506	-0.00073257	585.776114775664	67.944	0.42348	67.928	67.727	68.151	-0.016296					32	14	3	0	0	0	0.090484	1	17057	17057		54.774	33.027	1	365060			47097	787	27028	27029	57583	57583					-0.038662671392330594
SYLHSPPK	8	Unmodified	_SYLHSPPK_					0	0	0			REV__ENSG00000159625|ENST00000360716|DRC7	REV__ENSG00000159625|ENST00000360716|DRC7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2327880859375	2	464.747985	927.481417	-0.034958	-1.6247E-05	2.3386	0.0010868	2.3036	0.0010706	464.74945553175934	17.23	0.49575	17.23	16.981	17.477	0					22	17	2	0	0	0	0.34092	1	1628	1628		13.508	0.97634	1	44852	+		47098	16862	27029	27030	57584	57584					0.014775157260032756
SYLHSPPK	8	Unmodified	_SYLHSPPK_					0	0	0			REV__ENSG00000159625|ENST00000360716|DRC7	REV__ENSG00000159625|ENST00000360716|DRC7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	464.747985	927.481417	-0.18632	-8.6592E-05	3.2183	0.0014957	3.0319	0.0014091	464.7494348701423	17.383	0.51899	17.265	17.026	17.545	-0.11739	0.017433	0.00025346	NaN	13.508	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38683	+		47099	16862	27029	27030							0.014775157260032756
SYLIKAKQIA	10	Unmodified	_SYLIKAKQIA_					0	0	0			REV__ENSG00000102174|ENST00000379374|PHEX	REV__ENSG00000102174|ENST00000379374|PHEX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2431640625	2	567.847699	1133.68084	0.23325	0.00013245	-2.1383	-0.0012142	-1.9051	-0.0010818	568.347658904544	49.873	0.32436	49.873	49.701	50.025	0					18	11	2	0	0	0	0.31847	1	11480	11480		3.5965	2.267	1	108930	+		47100	14308	27030	27031	57585	57585					0.1193515095390012
SYLIKAKQIA	10	Unmodified	_SYLIKAKQIA_					0	0	0			REV__ENSG00000102174|ENST00000379374|PHEX	REV__ENSG00000102174|ENST00000379374|PHEX	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	567.847699	1133.68084	0.21477	0.00012196	-1.4699	-0.00083466	-1.2551	-0.00071271	568.3477291808473	49.733	0.23201	49.754	49.644	49.876	0.020691	-0.059497	0.00063589	NaN	3.5965	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142710	+		47101	14308	27030	27031							0.1193515095390012
SYLIRHQK	8	Unmodified	_SYLIRHQK_					0	0	0		ENSG00000183309|ENST00000526926|ZNF623;nc|ENSG00000183309|O75123|ZNF623	ENSG00000183309|ENST00000526926|ZNF623	ENSG00000183309|ENST00000526926|ZNF623	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8012084960938	2	522.801083	1043.58761	0.35989	0.00018815	-0.49448	-0.00025851	-0.13458	-7.0361E-05	522.8010839110312	30.736	0.7308	30.764	30.523	31.253	0.027946					46	25	3	0	0	0	0.37937	1	5674	5674		21.747	5.8995	1	415170			47102	7358	27031	27032	57586	57586					0.06756271291305893
SYLITSVEL	9	Unmodified	_SYLITSVEL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7816162109375	2	512.78169	1023.54883	0.26264	0.00013468	-0.064391	-3.3019E-05	0.19825	0.00010166	512.7816336124337	75.32	1.1563	75.32	75.012	76.168	0					118	41	4	0	0	0	4.5012E-11	4	19359	19311;19359;19398;19445		188.58	103.22	1	4721500			47103	882	27032	27033	57587;57588;57589;57590	57588					0.0379950114629537
SYLITSVEL	9	Unmodified	_SYLITSVEL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.78173828125	2	512.78169	1023.54883	0.29255	0.00015002	-0.021443	-1.0996E-05	0.27111	0.00013902	512.7816636716552	75.308	1.1636	75.36	75.024	76.188	0.052361					121	42	4	0	0	0	5.6213E-07	4	19336	19293;19336;19387;19438		158.2	83.78	1	4263200			47104	882	27032	27033	57591;57592;57593;57594	57592					0.0379950114629537
SYLITSVEL	9	Unmodified	_SYLITSVEL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7816162109375	2	512.78169	1023.54883	0.37911	0.0001944	-0.15467	-7.9312E-05	0.22444	0.00011509	512.7815851358858	75.397	1.1581	75.366	75.005	76.163	-0.031479					122	42	4	0	0	0	4.0037E-07	4	19361	19316;19361;19411;19460		164.52	93.382	1	3916300			47105	882	27032	27033	57595;57596;57597;57598	57596					0.0379950114629537
SYLIYLACAL	10	Unmodified	_SYLIYLACAL_					0	0	0			REV__nc|ENSG00000133943|Q7Z3D6-5|DGLUCY	REV__nc|ENSG00000133943|Q7Z3D6-5|DGLUCY	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.2880249023438	2	565.301736	1128.58892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.085	1	68.069	67.569	68.569	-0.016296								0	0	0	0.34994	1	17120	17120		14.838	0.93222	1		+		47106	15643	27033	27034	57599	57599					0.029767245451921553
SYLKCYKWVLK	11	Unmodified	_SYLKCYKWVLK_					0	0	0		nc|ENSG00000103599|Q86VS3-4|IQCH;nc|ENSG00000103599|Q86VS3-2|IQCH;ENSG00000103599|ENST00000335894|IQCH	nc|ENSG00000103599|Q86VS3-4|IQCH	nc|ENSG00000103599|Q86VS3-4|IQCH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.8083190917969	3	477.600336	1429.77918	0.086342	4.1237E-05	0.0081127	3.8746E-06	0.094455	4.5112E-05	477.6002977155319	33.447	0.58249	33.514	33.297	33.879	0.066704					47	20	4	0	0	0	0.33303	1	6503	6503		2.4348	0.35082	1	371210			47107	1846	27034	27035	57600	57600					0.0814801120741322
SYLKQLPHF	9	Unmodified	_SYLKQLPHF_					0	0	0		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2431640625	2	566.811116	1131.60768	0.32993	0.00018701	-2.2206	-0.0012586	-1.8906	-0.0010716	566.8099208320868	50.093	1.3563	50.093	49.516	50.872	0					136	49	4	0	0	0	0.035405	1	11480	11480		61.602	30.898	1	5742100			47108	4558	27035	27036	57601	57601					0.04714022231269155
SYLKRYFHI	9	Unmodified	_SYLKRYFHI_					0	0	0			REV__ENST00000474228.1_1_2:65593748-65593868:-|nuORF	REV__ENST00000474228.1_1_2:65593748-65593868:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.56085205078125	3	409.560869	1225.66078	-0.52991	-0.00021703	-0.068303	-2.7974E-05	-0.59822	-0.00024501	409.5608101909316	59.964	1.2347	60.06	59.741	60.976	0.095089					147	44	5	0	0	0	0.31479	1	14574	14574		6.6304	6.6304	1	14516000	+		47109	21392	27036	27037	57602	57602					0.056974000139234704
SYLKRYFHI	9	Unmodified	_SYLKRYFHI_					0	0	0			REV__ENST00000474228.1_1_2:65593748-65593868:-|nuORF	REV__ENST00000474228.1_1_2:65593748-65593868:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	409.560869	1225.66078	-0.42946	-0.00017589	-0.23024	-9.4297E-05	-0.6597	-0.00027019	409.5607429388786	60.121	1.0926	60.121	59.787	60.88	0	0.030616	-0.00012464	NaN	6.6304	138	39	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14812000	+		47110	21392	27036	27037							0.056974000139234704
SYLKRYFHI	9	Unmodified	_SYLKRYFHI_					0	0	0			REV__ENST00000474228.1_1_2:65593748-65593868:-|nuORF	REV__ENST00000474228.1_1_2:65593748-65593868:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	409.560869	1225.66078	-0.52991	-0.00021703	-0.068303	-2.7974E-05	-0.59822	-0.00024501	409.5608101909316	59.964	1.2347	60.06	59.741	60.976	0.095089	-0.030616	7.4329E-05	NaN	6.6304	147	44	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14516000	+		47111	21392	27036	27037							0.056974000139234704
SYLLDYFLF	9	Unmodified	_SYLLDYFLF_					0	0	0		nc|ENSG00000015520|Q9UHC9-2|NPC1L1;ENSG00000015520|ENST00000381160|NPC1L1;nc|ENSG00000015520|Q9UHC9|NPC1L1	nc|ENSG00000015520|Q9UHC9-2|NPC1L1	nc|ENSG00000015520|Q9UHC9-2|NPC1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.2140502929688	2	590.799883	1179.58521	0.84159	0.00049721	-2.6814	-0.0015842	-1.8398	-0.001087	590.7979735245693	77.887	0.26646	77.887	77.796	78.062	0					11	9	2	0	0	0	0.22596	1	20136	20136		21.747	4.8044	1	55138			47112	482	27037	27038	57603	57603					0.0026037804298084666
SYLLDYFLF	9	Unmodified	_SYLLDYFLF_					0	0	0		nc|ENSG00000015520|Q9UHC9-2|NPC1L1;ENSG00000015520|ENST00000381160|NPC1L1;nc|ENSG00000015520|Q9UHC9|NPC1L1	nc|ENSG00000015520|Q9UHC9-2|NPC1L1	nc|ENSG00000015520|Q9UHC9-2|NPC1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.2140502929688	2	590.799883	1179.58521	0.94362	0.00055749	-2.9863	-0.0017643	-2.0427	-0.0012068	590.79777343617	78.074	0.13847	78.044	77.983	78.122	-0.030434					6	4	2	0	0	0	0.24311	1	20172	20172		16.942	2.104	1	58355			47113	482	27037	27038	57604	57604					0.0026037804298084666
SYLLDYFLF	9	Unmodified	_SYLLDYFLF_					0	0	0		nc|ENSG00000015520|Q9UHC9-2|NPC1L1;ENSG00000015520|ENST00000381160|NPC1L1;nc|ENSG00000015520|Q9UHC9|NPC1L1	nc|ENSG00000015520|Q9UHC9-2|NPC1L1	nc|ENSG00000015520|Q9UHC9-2|NPC1L1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	590.799883	1179.58521	0.83291	0.00049208	-1.3306	-0.00078614	-0.49773	-0.00029406	591.3001998466899	77.625	0.10857	77.594	77.542	77.65	-0.031334	-0.14662	0.0014297	NaN	21.747	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57859			47114	482	27037	27038							0.0026037804298084666
SYLLEQEAL	9	Unmodified	_SYLLEQEAL_					0	0	0			REV__MYH3|p.D1709Y|1|0.17|ENSG00000109063|chr17:10631848-10631848|C/A|missense_variant	REV__MYH3|p.D1709Y|1|0.17|ENSG00000109063|chr17:10631848-10631848|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3084106445312	2	533.276772	1064.53899	0.11355	6.0556E-05	1.9414	0.0010353	2.055	0.0010959	533.2771474032983	61.617	0.27656	61.609	61.451	61.728	-0.0085526					14	9	2	0	0	0	0.2322	1	15178	15178		20.454	2.3186	1	156340	+		47115	22869	27038	27039	57605	57605					0.009303131409069465
SYLLMVTVIL	10	Unmodified	_SYLLMVTVIL_					0	0	0		ENST00000452360.6_1_4:942397-950358:+|nuORF;ENST00000506669.1_1_4:946199-949276:+|nuORF;ENST00000515876.5_1_4:941527-949679:+|nuORF;nc|ENSG00000127419|Q9BSA9-2|TMEM175;ENSG00000127419|ENST00000264771|TMEM175	ENST00000452360.6_1_4:942397-950358:+|nuORF;nc|ENSG00000127419|Q9BSA9-2|TMEM175	ENST00000452360.6_1_4:942397-950358:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7928466796875	2	576.340861	1150.66717	0.29629	0.00017076	-2.9087	-0.0016764	-2.6124	-0.0015056	576.3394893533842	73.018	0.39642	73.018	72.855	73.251	0					22	13	2	0	0	0	0.31267	1	18664	18664		14.838	0.93222	1	141960			47116	10656;3319	27039	27040	57606	57606					0.09786157130452011
SYLLNPSYL	9	Unmodified	_SYLLNPSYL_					0	0	0		ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8402099609375	2	535.281857	1068.54916	0.75261	0.00040286	-0.095619	-5.1183E-05	0.65699	0.00035167	535.2817560946103	74.898	0.4927	74.867	74.642	75.135	-0.031487					30	17	2	0	0	0	0.20881	1	19177	19177		27.629	19.719	1	217810			47117	5364	27040	27041	57607	57607					0.01762920866121931
SYLLQSTEL	9	Unmodified	_SYLLQSTEL_					0	0	0		nc|ENSG00000100599|Q8TB24-4|RIN3;ENST00000418924.6_1_14:93042630-93154594:+|nuORF;ENSG00000100599|ENST00000216487|RIN3	nc|ENSG00000100599|Q8TB24-4|RIN3	nc|ENSG00000100599|Q8TB24-4|RIN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.8025512695312	2	527.276772	1052.53899	0.38151	0.00020116	0.32028	0.00016888	0.7018	0.00037004	527.2766874854029	64.924	0.54324	64.924	64.699	65.242	0					53	19	3	0	0	0	0.14646	1	16195	16195		43.772	23.319	1	583010			47118	1611	27041	27042	57608	57608					0.014823131409002599
SYLLQSTEL	9	Unmodified	_SYLLQSTEL_					0	0	0		nc|ENSG00000100599|Q8TB24-4|RIN3;ENST00000418924.6_1_14:93042630-93154594:+|nuORF;ENSG00000100599|ENST00000216487|RIN3	nc|ENSG00000100599|Q8TB24-4|RIN3	nc|ENSG00000100599|Q8TB24-4|RIN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.802734375	2	527.276772	1052.53899	0.42578	0.0002245	0.73655	0.00038837	1.1623	0.00061287	527.276997485498	64.842	0.61064	64.935	64.688	65.299	0.09288					54	22	3	0	0	0	0.08298	1	16126	16126		60.074	25.971	1	596980			47119	1611	27041	27042	57609	57609					0.014823131409002599
SYLLQSTEL	9	Unmodified	_SYLLQSTEL_					0	0	0		nc|ENSG00000100599|Q8TB24-4|RIN3;ENST00000418924.6_1_14:93042630-93154594:+|nuORF;ENSG00000100599|ENST00000216487|RIN3	nc|ENSG00000100599|Q8TB24-4|RIN3	nc|ENSG00000100599|Q8TB24-4|RIN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8024291992188	2	527.276772	1052.53899	0.33241	0.00017527	0.065717	3.4651E-05	0.39813	0.00020993	527.2764772474582	64.968	0.62775	64.957	64.66	65.288	-0.01133					46	22	3	0	0	0	0.18479	1	16125	16125		34.932	12.196	1	623690			47120	1611	27041	27042	57610	57610					0.014823131409002599
SYLLTYLSS	9	Unmodified	_SYLLTYLSS_					0	0	0		ENST00000510336.5_1_5:140021201-140024680:+|nuORF;ENSG00000113119|ENST00000394671|TMCO6;nc|ENSG00000113119|Q96DC7-2|TMCO6;ENST00000511410.5_1_5:140021383-140021704:+|nuORF;ENST00000505086.2_1_5:140019102-140021704:+|nuORF	ENST00000510336.5_1_5:140021201-140024680:+|nuORF;ENST00000505086.2_1_5:140019102-140021704:+|nuORF	ENST00000505086.2_1_5:140019102-140021704:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3035888671875	2	523.773865	1045.53318	0.47882	0.00025079	-0.42182	-0.00022094	0.057001	2.9856E-05	523.7736220962789	75.341	0.75744	75.394	75.131	75.889	0.052361					45	27	2	0	0	0	0.17242	1	19326	19326		36.127	10.728	1	235730			47121	2474;11311	27042	27043	57611	57611					0.012232146292262769
SYLNSFFQL	9	Unmodified	_SYLNSFFQL_					0	0	0		ENSG00000165424|ENST00000372336|ZCCHC24	ENSG00000165424|ENST00000372336|ZCCHC24	ENSG00000165424|ENST00000372336|ZCCHC24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7799072265625	2	559.779482	1117.54441	0.38914	0.00021783	-0.2015	-0.00011279	0.18764	0.00010504	559.77948996262	89.358	0.43218	89.358	89.227	89.659	0					45	24	2	0	0	0	0.067763	1	23669	23669		59.368	36.632	1	130430			47122	5960	27043	27044	57612	57612					-0.009659632766215509
SYLNSFFQL	9	Unmodified	_SYLNSFFQL_					0	0	0		ENSG00000165424|ENST00000372336|ZCCHC24	ENSG00000165424|ENST00000372336|ZCCHC24	ENSG00000165424|ENST00000372336|ZCCHC24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.7796020507812	2	559.779482	1117.54441	0.41885	0.00023447	-0.24106	-0.00013494	0.17779	9.9525E-05	559.7794396233547	89.27	0.43723	89.361	89.187	89.624	0.090569					56	26	3	0	0	0	0.0091837	1	23620	23620		80.676	44.549	1	248130			47123	5960	27043	27044	57613	57613					-0.009659632766215509
SYLNSFFQL	9	Unmodified	_SYLNSFFQL_					0	0	0		ENSG00000165424|ENST00000372336|ZCCHC24	ENSG00000165424|ENST00000372336|ZCCHC24	ENSG00000165424|ENST00000372336|ZCCHC24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.7799682617188	2	559.779482	1117.54441	0.35809	0.00020045	0.089309	4.9993E-05	0.4474	0.00025044	559.779564250337	89.433	0.49042	89.432	89.201	89.691	-0.00080872					56	26	3	0	0	0	0.0032746	1	23648	23648		100.09	47.822	1	210420			47124	5960	27043	27044	57614	57614					-0.009659632766215509
SYLNSVQRL	9	Unmodified	_SYLNSVQRL_					0	0	0		nc|ENSG00000136243|O15504-2|NUP42;ENSG00000136243|ENST00000258742|NUP42	nc|ENSG00000136243|O15504-2|NUP42	nc|ENSG00000136243|O15504-2|NUP42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8194580078125	2	540.29583	1078.57711	0.26778	0.00014468	1.4992	0.00081002	1.767	0.0009547	540.2964641271266	46.271	0.90081	46.271	46.003	46.904	0					62	32	3	0	0	0	0.00028234	1	10390	10390		121.35	83.17	1	1889200			47125	3959	27044	27045	57615	57615					0.04096243846242942
SYLNSVQRL	9	Unmodified	_SYLNSVQRL_					0	0	0		nc|ENSG00000136243|O15504-2|NUP42;ENSG00000136243|ENST00000258742|NUP42	nc|ENSG00000136243|O15504-2|NUP42	nc|ENSG00000136243|O15504-2|NUP42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2967529296875	2	540.29583	1078.57711	0.67467	0.00036452	2.7804	0.0015022	3.455	0.0018667	540.2973141980827	45.986	0.67097	46.051	45.753	46.424	0.065048					47	23	3	0	0	0	6.0404E-05	1	10321	10321		147.24	80.784	1	1678200			47126	3959	27044	27045	57616	57616					0.04096243846242942
SYLNSVQRL	9	Unmodified	_SYLNSVQRL_					0	0	0		nc|ENSG00000136243|O15504-2|NUP42;ENSG00000136243|ENST00000258742|NUP42	nc|ENSG00000136243|O15504-2|NUP42	nc|ENSG00000136243|O15504-2|NUP42	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	540.29583	1078.57711	0.23088	0.00012474	3.2749	0.0017694	3.5058	0.0018942	540.2974615344125	45.935	0.63232	45.995	45.763	46.396	0.059837	-0.11056	0.0010737	NaN	147.24	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1843900			47127	3959	27044	27045							0.04096243846242942
SYLPAANRL	9	Unmodified	_SYLPAANRL_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.77984619140625	2	502.779816	1003.54508	0.57383	0.00028851	-0.26688	-0.00013418	0.30695	0.00015433	502.77954164789617	44.664	0.78892	44.664	44.357	45.146	0					73	28	4	0	0	0	0.069366	3	9940	9888;9893;9940		45.7	20.3	1	1357300			47128	500	27045	27046	57617;57618;57619	57619					0.04344876163088429
SYLPAANRL	9	Unmodified	_SYLPAANRL_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7795715332031	2	502.779816	1003.54508	0.50399	0.0002534	-0.26224	-0.00013185	0.24175	0.00012155	502.7795793550369	44.415	0.9693	44.484	44.093	45.062	0.068569					80	35	4	0	0	0	0.069366	3	9828	9815;9828;9862		45.7	27.352	1	1717200			47129	500	27045	27046	57620;57621;57622	57621					0.04344876163088429
SYLPAANRL	9	Unmodified	_SYLPAANRL_					0	0	0		ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	ENSG00000019505|ENST00000020926|SYT13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.7799377441406	2	502.779816	1003.54508	0.39274	0.00019746	-0.017475	-8.7862E-06	0.37526	0.00018867	502.7797186301947	44.374	0.84443	44.449	44.067	44.911	0.075047					74	30	3	0	0	0	0.069366	2	9844	9794;9844		45.7	24.27	1	1424600			47130	500	27045	27046	57623;57624	57624					0.04344876163088429
SYLPAFKVF	9	Unmodified	_SYLPAFKVF_					0	0	0		ENSG00000163754|ENST00000345003|GYG1;nc|ENSG00000163754|P46976-2|GYG1	ENSG00000163754|ENST00000345003|GYG1	ENSG00000163754|ENST00000345003|GYG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.7992553710938	2	536.29731	1070.58007	0.54115	0.00029022	0.058415	3.1328E-05	0.59956	0.00032154	536.2971203675281	71.651	0.45171	71.651	71.375	71.827	0					39	15	3	0	0	0	0.023967	3	18207	18195;18207;18253		62.573	42.119	1	1154000			47131	5726	27046	27047	57625;57626;57627	57626					0.04760118971034899
SYLPAFKVF	9	Unmodified	_SYLPAFKVF_					0	0	0		ENSG00000163754|ENST00000345003|GYG1;nc|ENSG00000163754|P46976-2|GYG1	ENSG00000163754|ENST00000345003|GYG1	ENSG00000163754|ENST00000345003|GYG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2974243164062	2	536.29731	1070.58007	0.36212	0.0001942	0.48678	0.00026106	0.8489	0.00045526	536.2972837153135	71.595	0.46689	71.652	71.375	71.842	0.056572					46	16	4	0	0	0	0.050251	1	18187	18187		71.922	47.248	1	1125400			47132	5726	27046	27047	57628	57628					0.04760118971034899
SYLPAFKVF	9	Unmodified	_SYLPAFKVF_					0	0	0		ENSG00000163754|ENST00000345003|GYG1;nc|ENSG00000163754|P46976-2|GYG1	ENSG00000163754|ENST00000345003|GYG1	ENSG00000163754|ENST00000345003|GYG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.29638671875	2	536.29731	1070.58007	0.57364	0.00030764	0.12958	6.9491E-05	0.70321	0.00037713	536.2970832478181	71.657	0.53124	71.63	71.341	71.873	-0.027275					45	18	3	0	0	0	0.023967	2	18210	18210;18257		62.573	44.438	1	1177200			47133	5726	27046	27047	57629;57630	57629					0.04760118971034899
SYLPFTEAF	9	Unmodified	_SYLPFTEAF_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7611694335938	2	537.760758	1073.50696	0.73962	0.00039774	-0.46716	-0.00025122	0.27246	0.00014652	537.7607324566	83.218	1.2378	83.218	82.844	84.082	0					161	48	5	0	0	0	1.0405E-16	4	21751	21704;21751;21797;21847		214.7	176.53	1	14382000			47134	5571	27047	27048	57631;57632;57633;57634	57632					-0.026850545422576033
SYLPFTEAF	9	Unmodified	_SYLPFTEAF_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7607421875	2	537.760758	1073.50696	0.5445	0.00029281	-0.21546	-0.00011587	0.32904	0.00017694	537.760854061029	83.124	1.1207	83.197	82.801	83.921	0.073097					164	43	5	0	0	0	1.0405E-16	5	21678	21635;21678;21725;21768;21816		214.7	176.53	1	13838000			47135	5571	27047	27048	57635;57636;57637;57638;57639	57636					-0.026850545422576033
SYLPFTEAF	9	Unmodified	_SYLPFTEAF_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7611694335938	2	537.760758	1073.50696	0.69395	0.00037318	-0.36753	-0.00019764	0.32642	0.00017554	537.7608380818588	83.237	1.0691	83.217	82.842	83.911	-0.020584					173	44	5	0	0	0	1.0405E-16	5	21739	21695;21739;21787;21830;21877		214.7	178.66	1	16926000			47136	5571	27047	27048	57640;57641;57642;57643;57644	57641					-0.026850545422576033
SYLPFTEAF	9	Unmodified	_SYLPFTEAF_					0	0	0		nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7606201171875	2	537.760758	1073.50696	0.71063	0.00038215	-0.91839	-0.00049387	-0.20776	-0.00011172	537.7603838100338	84.148	1.0361	84.131	83.877	84.913	-0.016823					96	43	3	0	0	0	0.0015545	4	22061	21972;22014;22061;22112		115.69	75.125	1	893770			47137	5571	27047	27048	57645;57646;57647;57648	57647					-0.026850545422576033
SYLPHAPPF	9	Unmodified	_SYLPHAPPF_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2395629882812	2	514.763635	1027.51272	0.7438	0.00038288	0.52157	0.00026849	1.2654	0.00065137	514.763830692667	55.88	0.56634	55.88	55.507	56.074	0					31	19	2	0	0	0	0.10111	1	13346	13346		50.855	14.811	1	489620			47138	6527	27048	27049	57649	57649					6.088760096645274E-05
SYLPHAPPF	9	Unmodified	_SYLPHAPPF_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.239501953125	2	514.763635	1027.51272	0.55674	0.00028659	0.31725	0.00016331	0.87398	0.0004499	514.7637822030011	55.746	0.57607	55.816	55.501	56.077	0.070885					45	20	4	0	0	0	0.05508	1	13329	13329		67.344	31.3	1	403080			47139	6527	27048	27049	57650	57650					6.088760096645274E-05
SYLPHAPPF	9	Unmodified	_SYLPHAPPF_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.239990234375	2	514.763635	1027.51272	0.57538	0.00029619	1.2039	0.00061974	1.7793	0.00091592	514.7642631452829	55.862	0.54173	55.842	55.565	56.107	-0.019077					32	19	2	0	0	0	0.072564	1	13357	13357		50.855	14.811	1	378790			47140	6527	27048	27049	57651	57651					6.088760096645274E-05
SYLPISPTF	9	Unmodified	_SYLPISPTF_					0	0	0		nc|ENSG00000089057|Q9UGH3-2|SLC23A2;ENSG00000089057|ENST00000338244|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.771240234375	2	512.771126	1023.5277	0.43267	0.00022186	-0.061427	-3.1498E-05	0.37125	0.00019036	512.7710025392453	76.935	1.0459	76.935	76.559	77.604	0					103	38	4	0	0	0	0.004681	2	19838	19838;19887		88.954	27.596	1	3711200			47141	1344	27049	27050	57652;57653	57652					0.016875358374363714
SYLPISPTF	9	Unmodified	_SYLPISPTF_					0	0	0		nc|ENSG00000089057|Q9UGH3-2|SLC23A2;ENSG00000089057|ENST00000338244|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.771240234375	2	512.771126	1023.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.919	1	76.974	76.474	77.474	0.055412								0	0	0	0.00075361	1	19822	19822		96.111	27.006	1				47142	1344	27049	27050	57654	57654					0.016875358374363714
SYLPISPTF	9	Unmodified	_SYLPISPTF_					0	0	0		nc|ENSG00000089057|Q9UGH3-2|SLC23A2;ENSG00000089057|ENST00000338244|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	nc|ENSG00000089057|Q9UGH3-2|SLC23A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.771240234375	2	512.771126	1023.5277	0.49044	0.00025148	-0.39335	-0.0002017	0.097086	4.9783E-05	512.7709681841014	76.953	1.464	76.922	76.24	77.704	-0.031334					131	53	4	0	0	0	0.0023784	2	19836	19836;19884		107.19	29.038	1	3850900			47143	1344	27049	27050	57655;57656	57655					0.016875358374363714
SYLPLAHMF	9	Oxidation (M)	_SYLPLAHM(Oxidation (M))F_		SYLPLAHM(1)F		SYLPLAHM(120)F	0	0	1		ACSL5|p.V586Ffs*30|1|0.03|ENSG00000197142|chr10:112426275-112426276|-/TTCTTTTCTCACCATATATTTTCAACACCCATGGAACT|frameshift_variant;nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6	ACSL5|p.V586Ffs*30|1|0.03|ENSG00000197142|chr10:112426275-112426276|-/TTCTTTTCTCACCATATATTTTCAACACCCATGGAACT|frameshift_variant	ACSL5|p.V586Ffs*30|1|0.03|ENSG00000197142|chr10:112426275-112426276|-/TTCTTTTCTCACCATATATTTTCAACACCCATGGAACT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7704467773438	2	547.770603	1093.52665	0.41896	0.00022949	0.91424	0.0005008	1.3332	0.00073029	547.7715886767202	57.846	1.3968	57.846	57.435	58.832	0					147	48	5	0	0	0	0.00097449	8	13967	13919;13967;13995;14005;14048;14091;14145;14168		123.1	74.75	1	8619100			47144	6	27050	27051	57657;57658;57659;57660;57661;57662;57663;57664	57658		0			-0.016370018031238942
SYLPLAHMF	9	Oxidation (M)	_SYLPLAHM(Oxidation (M))F_		SYLPLAHM(1)F		SYLPLAHM(140)F	0	0	1		ACSL5|p.V586Ffs*30|1|0.03|ENSG00000197142|chr10:112426275-112426276|-/TTCTTTTCTCACCATATATTTTCAACACCCATGGAACT|frameshift_variant;nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6	ACSL5|p.V586Ffs*30|1|0.03|ENSG00000197142|chr10:112426275-112426276|-/TTCTTTTCTCACCATATATTTTCAACACCCATGGAACT|frameshift_variant	ACSL5|p.V586Ffs*30|1|0.03|ENSG00000197142|chr10:112426275-112426276|-/TTCTTTTCTCACCATATATTTTCAACACCCATGGAACT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7702026367188	2	547.770603	1093.52665	0.55548	0.00030428	0.66941	0.00036668	1.2249	0.00067096	547.7714554189455	57.672	1.4976	57.758	57.372	58.87	0.085621					152	53	5	0	0	0	0.00012008	7	13913	13862;13913;13929;13953;13979;14031;14085		137.59	82.812	1	8726000			47145	6	27050	27051	57665;57666;57667;57668;57669;57670;57671	57666		0			-0.016370018031238942
SYLPLAHMF	9	Oxidation (M)	_SYLPLAHM(Oxidation (M))F_		SYLPLAHM(1)F		SYLPLAHM(110)F	0	0	1		ACSL5|p.V586Ffs*30|1|0.03|ENSG00000197142|chr10:112426275-112426276|-/TTCTTTTCTCACCATATATTTTCAACACCCATGGAACT|frameshift_variant;nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6	ACSL5|p.V586Ffs*30|1|0.03|ENSG00000197142|chr10:112426275-112426276|-/TTCTTTTCTCACCATATATTTTCAACACCCATGGAACT|frameshift_variant	ACSL5|p.V586Ffs*30|1|0.03|ENSG00000197142|chr10:112426275-112426276|-/TTCTTTTCTCACCATATATTTTCAACACCCATGGAACT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7706298828125	2	547.770603	1093.52665	0.56121	0.00030742	0.47758	0.0002616	1.0388	0.00056902	547.771272213919	57.963	1.4153	57.945	57.471	58.887	-0.0172					155	51	4	0	0	0	0.0016131	8	13985	13937;13985;14024;14049;14061;14068;14074;14126		114.94	78.817	1	8322000			47146	6	27050	27051	57672;57673;57674;57675;57676;57677;57678;57679	57673		0			-0.016370018031238942
SYLQAANAL	9	Unmodified	_SYLQAANAL_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.2781677246094	2	475.750724	949.486896	0.53482	0.00025444	-1.4716	-0.00070011	-0.93678	-0.00044567	475.75036376946156	55.003	0.32231	55.066	54.915	55.237	0.063202					16	11	2	0	0	0	0.17263	1	13103	13103		32.037	11.623	1	308600			47147	5669	27051	27052	57680	57680					0.010131945177818125
SYLQRRRPL	9	Unmodified	_SYLQRRRPL_					0	0	0			REV__ENSG00000130226|ENST00000377770|DPP6	REV__ENSG00000130226|ENST00000377770|DPP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.29296875	2	594.851638	1187.68872	0.51693	0.0003075	-1.1422	-0.00067945	-0.62529	-0.00037195	594.8510117791877	29.755	0.41655	29.768	29.532	29.948	0.012266					17	13	2	0	0	0	0.26188	1	5350	5350		1.6526	0.17072	1	66333	+		47148	15443	27052	27053	57681	57681					0.10238722994040472
SYLRESSLL	9	Unmodified	_SYLRESSLL_					0	0	0		nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.8092651367188	2	534.290214	1066.56587	0.623	0.00033286	0.89278	0.00047701	1.5158	0.00080987	534.2905418832084	49.533	0.40741	49.533	49.267	49.675	0					22	14	2	0	0	0	0.1426	1	11389	11389		32.037	8.0169	1	246310			47149	4978	27053	27054	57682	57682					0.03525421752101465
SYLRESSLL	9	Unmodified	_SYLRESSLL_					0	0	0		nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.8092041015625	2	534.290214	1066.56587	0.29912	0.00015982	1.3138	0.00070194	1.6129	0.00086176	534.2907201168975	49.504	0.37914	49.548	49.342	49.721	0.044888					23	13	2	0	0	0	0.21623	1	11393	11393		27.223	9.0883	1	355380			47150	4978	27053	27054	57683	57683					0.03525421752101465
SYLRESSLL	9	Unmodified	_SYLRESSLL_					0	0	0		nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.808837890625	2	534.290214	1066.56587	0.35748	0.000191	1.0302	0.00055044	1.3877	0.00074144	534.2906823023288	49.443	0.41277	49.475	49.268	49.681	0.032043					21	14	2	0	0	0	0.1426	1	11373	11373		32.037	9.3012	1	354910			47151	4978	27053	27054	57684	57684					0.03525421752101465
SYLRFVVKVV	10	Unmodified	_SYLRFVVKVV_					0	0	0		ENST00000358689.8_2_8:23288242-23288569:-|nuORF	ENST00000358689.8_2_8:23288242-23288569:-|nuORF	ENST00000358689.8_2_8:23288242-23288569:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2311096191406	3	403.916653	1208.72813	-0.41557	-0.00016786	-2.8334	-0.0011445	-3.249	-0.0013123	403.915510403965	14.859	0.25912	14.749	14.618	14.877	-0.10981					18	8	3	0	0	0	0.32137	1	827	827		1.7423	0.14999	1	49291			47152	9651	27054	27055	57685	57685					0.13211430224873766
SYLSESLML	9	Unmodified	_SYLSESLML_					0	0	0		ENST00000510921.5_1_5:86688679-86700752:-|nuORF;ENSG00000134480|ENST00000256897|CCNH	ENST00000510921.5_1_5:86688679-86700752:-|nuORF	ENST00000510921.5_1_5:86688679-86700752:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.7552490234375	2	521.759901	1041.50525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.834	1	82.907	82.407	83.407	0.073097								0	0	0	0.14428	1	21634	21634		36.044	9.1605	1				47153	3788	27055	27056	57686	57686					-0.01384431622500415
SYLSLPNNL	9	Unmodified	_SYLSLPNNL_					0	0	0		ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2	ENSG00000024048|ENST00000372901|UBR2	ENSG00000024048|ENST00000372901|UBR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.26220703125	2	510.771657	1019.52876	0.29559	0.00015098	0.87413	0.00044648	1.1697	0.00059746	510.77192406939344	70.554	0.4726	70.615	70.327	70.8	0.060783					25	16	2	0	0	0	0.13748	1	17860	17860		32.786	3.7041	1	173620			47154	529	27056	27057	57687	57687					0.01977750206322071
SYLSRLQYF	9	Unmodified	_SYLSRLQYF_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8059692382812	2	588.806031	1175.59751	0.40754	0.00023996	-1.0623	-0.00062548	-0.65474	-0.00038552	588.8052603907449	62.812	1.0726	62.812	62.316	63.389	0					79	39	3	0	0	0	0.0010968	2	15498	15498;15554		121.53	81.584	1	1837900			47155	4664	27057	27058	57688;57689	57688					0.01673414506035442
SYLSRLQYF	9	Unmodified	_SYLSRLQYF_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	588.806031	1175.59751	0.33094	0.00019486	-0.91316	-0.00053767	-0.58221	-0.00034281	588.8053439760698	62.816	1.0558	62.808	62.353	63.408	-0.0085564	0.0144	0.00010314	NaN	121.53	92	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2040400			47156	4664	27057	27058							0.01673414506035442
SYLSSILRF	9	Unmodified	_SYLSSILRF_					0	0	0		nc|ENSG00000175115|Q6VY07-2|PACS1;ENSG00000175115|ENST00000320580|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF	nc|ENSG00000175115|Q6VY07-2|PACS1	nc|ENSG00000175115|Q6VY07-2|PACS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7623901367188	2	543.303124	1084.5917	0.3317	0.00018022	-0.81357	-0.00044201	-0.48186	-0.0002618	543.3025360115968	75.549	0.33391	75.549	75.315	75.649	0					21	11	2	0	0	0	0.035405	1	19440	19440		70.332	30.382	1	485640			47157	6839	27058	27059	57690	57690					0.05278315994382865
SYLSSILRF	9	Unmodified	_SYLSSILRF_					0	0	0		nc|ENSG00000175115|Q6VY07-2|PACS1;ENSG00000175115|ENST00000320580|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF	nc|ENSG00000175115|Q6VY07-2|PACS1	nc|ENSG00000175115|Q6VY07-2|PACS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8040771484375	2	543.303124	1084.5917	0.58322	0.00031686	-0.58508	-0.00031788	-0.0018623	-1.0118E-06	543.3025382185135	75.466	0.32289	75.519	75.295	75.618	0.052361					25	11	3	0	0	0	0.0037449	1	19382	19382		96.367	48.021	1	461890			47158	6839	27058	27059	57691	57691					0.05278315994382865
SYLSSLSHL	9	Unmodified	_SYLSSLSHL_					0	0	0		ENSG00000058063|ENST00000323116|ATP11B;ENST00000490303.5_1_3:182583321-182631816:+|nuORF	ENSG00000058063|ENST00000323116|ATP11B	ENSG00000058063|ENST00000323116|ATP11B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.75335693359375	2	503.763832	1005.51311	0.34325	0.00017292	-0.50332	-0.00025355	-0.16007	-8.0636E-05	503.7635345310607	57.701	0.40849	57.701	57.495	57.904	0					20	14	2	0	0	0	0.22061	1	13888	13888		24.021	10.115	1	264170			47159	729	27059	27060	57692	57692					0.010574636892783928
SYLSSLSHL	9	Unmodified	_SYLSSLSHL_					0	0	0		ENSG00000058063|ENST00000323116|ATP11B;ENST00000490303.5_1_3:182583321-182631816:+|nuORF	ENSG00000058063|ENST00000323116|ATP11B	ENSG00000058063|ENST00000323116|ATP11B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	503.763832	1005.51311	0.34341	0.000173	-0.11067	-5.5753E-05	0.23274	0.00011725	503.7636920702119	57.449	0.36579	57.534	57.372	57.738	0.085617	-0.083256	0.00016833	NaN	13.042	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296850			47160	729	27059	27060							0.010574636892783928
SYLSVPAYF	9	Unmodified	_SYLSVPAYF_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3035888671875	2	523.7633	1045.51205	0.59122	0.00030966	-2.5466	-0.0013338	-1.9554	-0.0010242	523.7622157229031	76.942	0.53466	76.942	76.693	77.228	0					31	19	2	0	0	0	0.20651	1	19802	19802		20.454	11.106	1	177870			47161	12873	27060	27061	57693	57693					-0.008887506796327216
SYLSVPAYF	9	Unmodified	_SYLSVPAYF_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3034057617188	2	523.7633	1045.51205	0.41697	0.00021839	-3.1132	-0.0016306	-2.6962	-0.0014122	523.761817472902	76.853	0.48178	76.906	76.724	77.206	0.053589					27	16	2	0	0	0	0.20651	1	19816	19816		20.454	11.106	1	177990			47162	12873	27060	27061	57694	57694					-0.008887506796327216
SYLSVPAYF	9	Unmodified	_SYLSVPAYF_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3035278320312	2	523.7633	1045.51205	0.73176	0.00038327	-3.7483	-0.0019632	-3.0165	-0.0015799	523.7617923978702	76.96	0.5308	76.929	76.682	77.213	-0.031334					30	19	2	0	0	0	0.20651	1	19838	19838		26.884	12.302	1	212990			47163	12873	27060	27061	57695	57695					-0.008887506796327216
SYLTSASSL	9	Unmodified	_SYLTSASSL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.73468017578125	2	464.73474	927.454927	0.03813	1.772E-05	-0.024067	-1.1185E-05	0.014063	6.5356E-06	464.73469474488235	52.544	0.69307	52.544	52.267	52.96	0					71	24	4	0	0	0	5.2996E-06	2	12359	12359;12410		156.16	70.799	1	3583000			47164	1896	27061	27062	57696;57697	57696					-0.011702179559961223
SYLTSASSL	9	Unmodified	_SYLTSASSL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7347412109375	2	464.73474	927.454927	0.093987	4.3679E-05	-0.10451	-4.8571E-05	-0.010526	-4.8916E-06	464.7346848568603	52.446	0.78218	52.496	52.202	52.984	0.050571					89	28	4	0	0	0	5.2996E-06	2	12317	12317;12367		156.16	70.799	1	3284300			47165	1896	27061	27062	57698;57699	57698					-0.011702179559961223
SYLTSASSL	9	Unmodified	_SYLTSASSL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.734619140625	2	464.73474	927.454927	0.12443	5.7828E-05	-0.13082	-6.0796E-05	-0.0063862	-2.9679E-06	464.7346571902669	52.682	0.82127	52.681	52.305	53.126	-0.00081253					77	29	4	0	0	0	5.2996E-06	3	12344	12344;12394;12445		156.16	70.799	1	3298100			47166	1896	27061	27062	57700;57701;57702	57700					-0.011702179559961223
SYLVQVYW	8	Unmodified	_SYLVQVYW_					0	0	0		ENSG00000268089|ENST00000598523|GABRQ	ENSG00000268089|ENST00000598523|GABRQ	ENSG00000268089|ENST00000598523|GABRQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8139038085938	2	529.271293	1056.52803	0.7784	0.00041199	0.29218	0.00015464	1.0706	0.00056663	529.2715307592431	74.892	0.4751	74.892	74.731	75.206	0					27	16	3	0	0	0	0.31617	1	19210	19210		26.884	1.4843	1	368990			47167	8684	27062	27063	57703	57703					0.002029555572789832
SYLVQVYW	8	Unmodified	_SYLVQVYW_					0	0	0		ENSG00000268089|ENST00000598523|GABRQ	ENSG00000268089|ENST00000598523|GABRQ	ENSG00000268089|ENST00000598523|GABRQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.81396484375	2	529.271293	1056.52803	0.42552	0.00022521	1.4276	0.00075558	1.8531	0.0009808	529.2716882758778	74.885	0.51124	74.937	74.758	75.269	0.052361					43	18	4	0	0	0	0.29634	1	19223	19223		34.102	8.7031	1	298410			47168	8684	27062	27063	57704	57704					0.002029555572789832
SYLVQVYW	8	Unmodified	_SYLVQVYW_					0	0	0		ENSG00000268089|ENST00000598523|GABRQ	ENSG00000268089|ENST00000598523|GABRQ	ENSG00000268089|ENST00000598523|GABRQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8138427734375	2	529.271293	1056.52803	0.79575	0.00042117	0.23475	0.00012425	1.0305	0.00054542	529.2715111395584	74.993	0.53635	74.962	74.726	75.262	-0.031487					42	19	3	0	0	0	0.32435	1	19180	19180		23.148	1.4018	1	334150			47169	8684	27062	27063	57705	57705					0.002029555572789832
SYLVQYMQF	9	Oxidation (M)	_SYLVQYM(Oxidation (M))QF_		SYLVQYM(1)QF		SYLVQYM(44)QF	0	0	1		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.7952880859375	2	597.778625	1193.5427	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.185	1	66.185	65.685	66.685	0								0	0	0	0.111	1	16552	16552		43.772	11.467	1				47170	322	27063	27064	57706	57706		29			-0.046333403568951326
SYLVQYMQF	9	Oxidation (M)	_SYLVQYM(Oxidation (M))QF_		SYLVQYM(1)QF		SYLVQYM(54)QF	0	0	1		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.7788696289062	2	597.778625	1193.5427	0.6982	0.00041737	-1.9665	-0.0011756	-1.2684	-0.00075819	597.7787797712347	66	0.87743	66.084	65.806	66.684	0.083832					76	31	4	0	0	0	0.10058	1	16481	16481		53.833	35.686	1	283130			47171	322	27063	27064	57707	57707		29			-0.046333403568951326
SYLVQYMQF	9	Oxidation (M)	_SYLVQYM(Oxidation (M))QF_		SYLVQYM(1)QF		SYLVQYM(52)QF	0	0	1		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.7952270507812	2	597.778625	1193.5427	0.43493	0.00025999	-1.1211	-0.00067018	-0.6862	-0.00041019	597.7790549324374	66.083	0.96645	66.07	65.748	66.714	-0.013588					80	34	3	0	0	0	0.05341	2	16578	16529;16578		51.63	20.3	1	326200			47172	322	27063	27064	57708;57709	57709		29			-0.046333403568951326
SYLVRADEI	9	Unmodified	_SYLVRADEI_					0	0	0			REV__CON__A2I7N1	REV__CON__A2I7N1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.30859375	2	533.282389	1064.55022	0.53656	0.00028614	0.67087	0.00035776	1.2074	0.0006439	533.283324884131	62.356	0.58877	62.356	62.022	62.611	0					35	21	2	0	0	0	0.2322	1	15340	15340		20.454	2.3186	1	178950	+	+	47173	13242	27064	27065	57710	57710					0.02053135235018999
SYLYEDTMV	9	Unmodified	_SYLYEDTMV_					0	0	0			REV__ENSG00000153993|ENST00000284136|SEMA3D	REV__ENSG00000153993|ENST00000284136|SEMA3D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.74755859375	2	560.74699	1119.47943	0.483	0.00027084	1.1463	0.00064276	1.6293	0.0009136	560.7472287696871	85.899	0.90155	85.899	85.527	86.429	0					67	33	3	0	0	0	0.17787	1	22622	22622		26.884	5.137	1	626770	+		47174	16643	27065	27066	57711	57711					-0.07553325864796534
SYLYEDTMV	9	Unmodified	_SYLYEDTMV_					0	0	0			REV__ENSG00000153993|ENST00000284136|SEMA3D	REV__ENSG00000153993|ENST00000284136|SEMA3D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.74755859375	2	560.74699	1119.47943	0.48165	0.00027009	1.0098	0.00056626	1.4915	0.00083635	560.747136236464	85.83	0.75147	85.915	85.618	86.369	0.084251					68	27	3	0	0	0	0.25314	1	22608	22608		15.847	1.0089	1	423480	+		47175	16643	27065	27066	57712	57712					-0.07553325864796534
SYLYSPYFG	9	Unmodified	_SYLYSPYFG_					0	0	0		ENST00000371146.5_1_1:62916945-62917257:+|nuORF	ENST00000371146.5_1_1:62916945-62917257:+|nuORF	ENST00000371146.5_1_1:62916945-62917257:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7525634765625	2	548.752933	1095.49131	0.67166	0.00036858	-1.6399	-0.00089989	-0.96822	-0.00053131	548.7521993332	83.218	0.67352	83.218	82.975	83.648	0					56	25	3	0	0	0	0.22188	1	21774	21774		20.454	1.1966	1	704720			47176	9813	27066	27067	57713	57713					-0.05261341059303959
SYLYSPYFG	9	Unmodified	_SYLYSPYFG_					0	0	0		ENST00000371146.5_1_1:62916945-62917257:+|nuORF	ENST00000371146.5_1_1:62916945-62917257:+|nuORF	ENST00000371146.5_1_1:62916945-62917257:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.752197265625	2	548.752933	1095.49131	0.64294	0.00035281	-1.5143	-0.00083096	-0.87133	-0.00047815	548.752152036726	83.1	0.8063	83.173	82.928	83.734	0.073097					69	30	3	0	0	0	0.14076	1	21763	21763		32.305	5.4218	1	703870			47177	9813	27066	27067	57714	57714					-0.05261341059303959
SYLYSPYFG	9	Unmodified	_SYLYSPYFG_					0	0	0		ENST00000371146.5_1_1:62916945-62917257:+|nuORF	ENST00000371146.5_1_1:62916945-62917257:+|nuORF	ENST00000371146.5_1_1:62916945-62917257:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	548.752933	1095.49131	0.67166	0.00036858	-1.6399	-0.00089989	-0.96822	-0.00053131	548.7521993332	83.218	0.67352	83.218	82.975	83.648	0	0.020658	-0.00021419	NaN	32.305	56	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	704720			47178	9813	27066	27067							-0.05261341059303959
SYMATFYEF	9	Oxidation (M)	_SYM(Oxidation (M))ATFYEF_		SYM(1)ATFYEF		SYM(82)ATFYEF	0	0	1		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.7418212890625	2	587.741708	1173.46886	0.38028	0.00022351	0.17889	0.00010514	0.55917	0.00032865	587.7416896730388	70.661	0.69186	70.661	70.378	71.07	0					52	24	3	0	0	0	0.023103	1	17914	17914		81.89	45.384	1	534000			47179	7579	27067	27068	57715	57715		836			-0.1109330851923005
SYMATFYEF	9	Oxidation (M)	_SYM(Oxidation (M))ATFYEF_		SYM(1)ATFYEF		SYM(100)ATFYEF	0	0	1		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.7418212890625	2	587.741708	1173.46886	0.32856	0.00019311	0.15011	8.8225E-05	0.47867	0.00028134	587.7416884903554	70.657	0.58097	70.717	70.406	70.987	0.060783					49	20	4	0	0	0	0.0028127	1	17939	17939		103.75	70.963	1	606520			47180	7579	27067	27068	57716	57716		836			-0.1109330851923005
SYMATFYEF	9	Oxidation (M)	_SYM(Oxidation (M))ATFYEF_		SYM(1)ATFYEF		SYM(92)ATFYEF	0	0	1		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.7418823242188	2	587.741708	1173.46886	0.44289	0.00026031	0.0922	5.419E-05	0.53509	0.0003145	587.741640678226	70.708	0.66943	70.683	70.407	71.077	-0.024872					55	23	3	0	0	0	0.0075874	1	17930	17930		92.491	66.223	1	510720			47181	7579	27067	27068	57717	57717		836			-0.1109330851923005
SYMEEMYFA	9	Unmodified	_SYMEEMYFA_					0	0	0		nc|ENSG00000197444|Q9ULD0-2|OGDHL;ENSG00000197444|ENST00000374103|OGDHL;ENST00000471460.1_1_10:50964809-50966620:-|nuORF	nc|ENSG00000197444|Q9ULD0-2|OGDHL	nc|ENSG00000197444|Q9ULD0-2|OGDHL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8469848632812	2	585.727743	1169.44093	0.32846	0.00019239	-4.0288	-0.0023598	-3.7004	-0.0021674	586.2265693645243	62.81	0.35431	62.906	62.712	63.066	0.095722					16	12	2	0	0	0	0.25526	1	15501	15501		7.9102	3.1541	1	150480			47182	7964	27068	27069	57718	57718					-0.13700954770934004
SYMEEMYFA	9	Unmodified	_SYMEEMYFA_					0	0	0		nc|ENSG00000197444|Q9ULD0-2|OGDHL;ENSG00000197444|ENST00000374103|OGDHL;ENST00000471460.1_1_10:50964809-50966620:-|nuORF	nc|ENSG00000197444|Q9ULD0-2|OGDHL	nc|ENSG00000197444|Q9ULD0-2|OGDHL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.846923828125	2	585.727743	1169.44093	0.28455	0.00016667	-4.3731	-0.0025614	-4.0885	-0.0023948	585.7255852977165	62.938	0.38663	62.929	62.778	63.165	-0.0085526					17	13	2	0	0	0	0.25526	1	15532	15532		7.9102	3.1541	1	184100			47183	7964	27068	27069	57719	57719					-0.13700954770934004
SYMESVVTF	9	Oxidation (M)	_SYM(Oxidation (M))ESVVTF_		SYM(1)ESVVTF		SYM(140)ESVVTF	0	0	1		ENST00000593004.5_1_17:58756818-58797523:+|nuORF;ENST00000591371.5_1_17:58756818-58786882:+|nuORF;ENST00000589916.5_1_17:58756818-58885438:+|nuORF;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7420043945312	2	539.741708	1077.46886	0.32784	0.00017695	0.50672	0.0002735	0.83456	0.00045045	539.7419565409562	59.491	0.87315	59.491	59.133	60.006	0					97	30	5	0	0	0	9.3868E-05	3	14449	14449;14499;14544		141.83	113.34	1	4613000			47184	4370	27069	27070	57720;57721;57722	57720		554			-0.0667730851921533
SYMESVVTF	9	Oxidation (M)	_SYM(Oxidation (M))ESVVTF_		SYM(1)ESVVTF		SYM(140)ESVVTF	0	0	1		ENST00000593004.5_1_17:58756818-58797523:+|nuORF;ENST00000591371.5_1_17:58756818-58786882:+|nuORF;ENST00000589916.5_1_17:58756818-58885438:+|nuORF;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7421264648438	2	539.741708	1077.46886	0.38058	0.00020541	0.52156	0.00028151	0.90214	0.00048692	539.7419194853263	59.321	0.90976	59.412	59.077	59.987	0.091305					97	32	4	0	0	0	9.3868E-05	2	14410	14410;14460		141.83	113.34	1	3986500			47185	4370	27069	27070	57723;57724	57723		554			-0.0667730851921533
SYMESVVTF	9	Oxidation (M)	_SYM(Oxidation (M))ESVVTF_		SYM(1)ESVVTF		SYM(140)ESVVTF	0	0	1		ENST00000593004.5_1_17:58756818-58797523:+|nuORF;ENST00000591371.5_1_17:58756818-58786882:+|nuORF;ENST00000589916.5_1_17:58756818-58885438:+|nuORF;ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	ENST00000593004.5_1_17:58756818-58797523:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7421875	2	539.741708	1077.46886	0.67486	0.00036425	0.29236	0.0001578	0.96722	0.00052205	539.7418388076039	59.503	0.9392	59.491	59.087	60.026	-0.011486					95	32	4	0	0	0	9.3868E-05	3	14482	14437;14482;14533		141.83	113.34	1	4196900			47186	4370	27069	27070	57725;57726;57727	57726		554			-0.0667730851921533
SYMFVDENTF	10	Oxidation (M)	_SYM(Oxidation (M))FVDENTF_		SYM(1)FVDENTF		SYM(210)FVDENTF	0	0	1		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENSG00000212747|ENST00000391440|RTL8B;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000134590|ENST00000257013|RTL8C	ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENSG00000212747|ENST00000391440|RTL8B	ENSG00000212747|ENST00000391440|RTL8B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.7609252929688	2	634.760629	1267.5067	0.39757	0.00025236	-0.019747	-1.2534E-05	0.37782	0.00023983	634.7606195342562	65.553	1.6158	65.553	65.128	66.744	0					179	57	5	0	0	0	2.1034E-20	3	16391	16345;16391;16439		211.85	149.28	1	6272200			47187	11482;3798	27070	27071	57728;57729;57730	57729		474			-0.11634842324406236
SYMFVDENTF	10	Oxidation (M)	_SYM(Oxidation (M))FVDENTF_		SYM(1)FVDENTF		SYM(240)FVDENTF	0	0	1		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENSG00000212747|ENST00000391440|RTL8B;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000134590|ENST00000257013|RTL8C	ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENSG00000212747|ENST00000391440|RTL8B	ENSG00000212747|ENST00000391440|RTL8B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.7609252929688	2	634.760629	1267.5067	0.18703	0.00011872	0.18148	0.00011519	0.3685	0.00023391	634.7607999137037	65.454	1.4126	65.543	65.086	66.499	0.088882					169	51	5	0	0	0	4.408E-29	4	16300	16300;16345;16392;16445		243.33	180.75	1	6377000			47188	11482;3798	27070	27071	57731;57732;57733;57734	57731		474			-0.11634842324406236
SYMFVDENTF	10	Oxidation (M)	_SYM(Oxidation (M))FVDENTF_		SYM(1)FVDENTF		SYM(210)FVDENTF	0	0	1		ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENST00000520964.1_1_X:134185341-134186186:-|nuORF;ENST00000464369.1_1_X:134166413-134167211:+|nuORF;ENST00000495563.5_1_X:134166413-134167211:+|nuORF;ENSG00000212747|ENST00000391440|RTL8B;ENSG00000203950|ENST00000370775|RTL8A;ENSG00000134590|ENST00000257013|RTL8C	ENST00000522309.1_1_X:134185341-134186138:-|nuORF;ENSG00000212747|ENST00000391440|RTL8B	ENSG00000212747|ENST00000391440|RTL8B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.7608642578125	2	634.760629	1267.5067	0.55706	0.0003536	-0.15205	-9.6513E-05	0.40501	0.00025709	634.7605387276194	65.526	1.364	65.515	65.098	66.462	-0.011337					158	49	5	0	0	0	1.7898E-20	5	16335	16264;16335;16386;16431;16477		214.05	151.48	1	6488700			47189	11482;3798	27070	27071	57735;57736;57737;57738;57739	57736		474			-0.11634842324406236
SYMGHFDLL	9	Oxidation (M)	_SYM(Oxidation (M))GHFDLL_		SYM(1)GHFDLL		SYM(210)GHFDLL	0	0	1		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.749755859375	2	549.749867	1097.48518	0.7377	0.00040555	-0.84079	-0.00046223	-0.1031	-5.6676E-05	549.7503294289602	56.382	3.6283	56.382	55.992	59.621	0					377	130	6	0	0	0	1.8572E-16	10	13502	13460;13502;13533;13583;13632;13677;13727;13775;13826;13878		205.38	163.55	1	135770000			47190	6409	27071	27072	57740;57741;57742;57743;57744;57745;57746;57747;57748;57749	57741		750			-0.059661825624516496
SYMGHFDLL	9	Oxidation (M)	_SYM(Oxidation (M))GHFDLL_		SYM(1)GHFDLL		SYM(210)GHFDLL	0	0	1		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7498168945312	2	549.749867	1097.48518	0.91147	0.00050108	-0.99041	-0.00054448	-0.078948	-4.3402E-05	549.7502891410893	56.297	3.0373	56.376	55.997	59.035	0.078674					325	110	6	0	0	0	1.8572E-16	10	13475	13429;13475;13518;13571;13620;13678;13729;13781;13831;13984		205.38	149.21	1	148820000			47191	6409	27071	27072	57750;57751;57752;57753;57754;57755;57756;57757;57758;57759	57751		750			-0.059661825624516496
SYMGHFDLL	9	Oxidation (M)	_SYM(Oxidation (M))GHFDLL_		SYM(1)GHFDLL		SYM(190)GHFDLL	0	0	1		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.75	2	549.749867	1097.48518	1.0724	0.00058954	-1.1198	-0.00061563	-0.047454	-2.6088E-05	549.7501259482493	56.614	3.0013	56.595	56.107	59.108	-0.019077					354	109	7	0	0	0	4.5012E-11	11	13560	13512;13560;13602;13647;13688;13733;13776;13819;13835;13869;13918		188.58	146.74	1	143220000			47192	6409	27071	27072	57760;57761;57762;57763;57764;57765;57766;57767;57768;57769;57770	57761		750			-0.059661825624516496
SYMGHFDLL	9	Oxidation (M)	_SYM(Oxidation (M))GHFDLL_					0	0	1		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.749867	1097.48518	0.31653	0.00017401	-0.62896	-0.00034577	-0.31243	-0.00017176	549.7495534405214	59.88	0.89245	59.869	59.593	60.485	-0.011486	-0.16415	2.931E-05	NaN	48.346	45	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405620			47193	6409	27071	27072				750			-0.059661825624516496
SYMLVNENRF	10	Oxidation (M)	_SYM(Oxidation (M))LVNENRF_		SYM(1)LVNENRF		SYM(210)LVNENRF	0	0	1		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.8037719726562	2	644.803162	1287.59177	0.70667	0.00045566	-0.052692	-3.3976E-05	0.65398	0.00042169	644.8031228646859	47.353	0.83689	47.353	46.961	47.797	0					98	29	4	0	0	0	2.6036000000000002E-20	3	10680	10680;10731;10781		208.35	175.57	1	2746800			47194	7277	27072	27073	57771;57772;57773	57771		808			-0.040520520679592664
SYMLVNENRF	10	Oxidation (M)	_SYM(Oxidation (M))LVNENRF_		SYM(1)LVNENRF		SYM(210)LVNENRF	0	0	1		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.8035888671875	2	644.803162	1287.59177	0.4201	0.00027088	0.33736	0.00021753	0.75746	0.00048841	644.8033109013813	47.23	0.90524	47.283	46.872	47.777	0.052574					99	33	4	0	0	0	2.2349E-20	4	10709	10617;10661;10709;10759		210.93	178.15	1	2974400			47195	7277	27072	27073	57774;57775;57776;57777	57776		808			-0.040520520679592664
SYMLVNENRF	10	Oxidation (M)	_SYM(Oxidation (M))LVNENRF_		SYM(1)LVNENRF		SYM(220)LVNENRF	0	0	1		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	644.8038330078125	2	644.803162	1287.59177	0.99948	0.00064446	-0.40271	-0.00025967	0.59677	0.0003848	644.8028894138723	47.27	0.87949	47.324	46.877	47.757	0.054371					106	31	4	0	0	0	6.230599999999999E-21	4	10642	10642;10688;10737;10789		222.22	193.13	1	3123400			47196	7277	27072	27073	57778;57779;57780;57781	57778		808			-0.040520520679592664
SYMMRAQQL	9	2 Oxidation (M)	_SYM(Oxidation (M))M(Oxidation (M))RAQQL_		SYM(1)M(1)RAQQL		SYM(52)M(52)RAQQL	0	0	2		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2|p.F1990Lfs*7|1|0.2|ENSG00000054654|chr14:64025137-64025137|T/-|frameshift_variant	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.2653198242188	2	580.265358	1158.51616	0.10994	6.3792E-05	-0.013591	-7.8865E-06	0.096344	5.5905E-05	580.2654533202676	25.813	0.84618	25.813	25.504	26.35	0					62	29	3	0	0	0	0.05341	1	4176	4176		51.63	34.688	1	205450			47197	692	27073	27074	57782	57782		84;85			-0.05675352519847365
SYMMRAQQL	9	2 Oxidation (M)	_SYM(Oxidation (M))M(Oxidation (M))RAQQL_		SYM(1)M(1)RAQQL		SYM(53)M(53)RAQQL	0	0	2		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2|p.F1990Lfs*7|1|0.2|ENSG00000054654|chr14:64025137-64025137|T/-|frameshift_variant	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2658081054688	2	580.265358	1158.51616	0.18387	0.0001067	-0.17856	-0.00010361	0.005318	3.0859E-06	580.2653106907413	25.994	0.88493	25.972	25.524	26.409	-0.022236					67	31	3	0	0	0	0.048637	2	4188	4188;4275		53.404	40.872	1	236270			47198	692	27073	27074	57783;57784	57783		84;85			-0.05675352519847365
SYMPTVSHL	9	Oxidation (M)	_SYM(Oxidation (M))PTVSHL_		SYM(1)PTVSHL		SYM(82)PTVSHL	0	0	1		nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.75	2	525.749867	1049.48518	0.4049	0.00021288	-0.18367	-9.6567E-05	0.22123	0.00011631	525.7496959314942	38.234	0.58528	38.234	38.064	38.649	0					37	20	2	0	0	0	0.0083926	1	7955	7955		81.89	55.007	1	843180			47199	6232	27074	27075	57785	57785		735			-0.037581825624556586
SYMPTVSHL	9	Oxidation (M)	_SYM(Oxidation (M))PTVSHL_		SYM(1)PTVSHL		SYM(75)PTVSHL	0	0	1		nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8248291015625	2	525.749867	1049.48518	0.64686	0.00034009	-0.11996	-6.3071E-05	0.5269	0.00027702	525.7498480169945	37.892	0.38514	37.892	37.679	38.064	0					38	13	4	0	0	0	0.040595	1	7866	7866		74.929	48.045	1	894300			47200	6232	27074	27075	57786	57786		735			-0.037581825624556586
SYMPTVSHL	9	Oxidation (M)	_SYM(Oxidation (M))PTVSHL_		SYM(1)PTVSHL		SYM(61)PTVSHL	0	0	1		nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7501220703125	2	525.749867	1049.48518	0.52563	0.00027635	-0.024387	-1.2822E-05	0.50124	0.00026353	525.7498783320394	37.835	0.40782	37.926	37.693	38.101	0.090885					45	14	4	0	0	0	0.027237	1	7848	7848		61.357	35.958	1	816610			47201	6232	27074	27075	57787	57787		735			-0.037581825624556586
SYMPTVSHL	9	Oxidation (M)	_SYM(Oxidation (M))PTVSHL_		SYM(1)PTVSHL		SYM(96)PTVSHL	0	0	1		nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7499389648438	2	525.749867	1049.48518	0.52597	0.00027653	-0.27152	-0.00014275	0.25445	0.00013377	525.7497012119121	38.273	0.63059	38.364	38.072	38.702	0.090881					39	22	2	0	0	0	0.0037552	1	7936	7936		96.285	62.182	1	761120			47202	6232	27074	27075	57788	57788		735			-0.037581825624556586
SYMPTVSHL	9	Oxidation (M)	_SYM(Oxidation (M))PTVSHL_		SYM(1)PTVSHL		SYM(78)PTVSHL	0	0	1		nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7498779296875	2	525.749867	1049.48518	0.47898	0.00025182	-0.30527	-0.00016049	0.17371	9.133E-05	525.7496878487616	38.193	0.69857	38.29	38.007	38.706	0.097527					44	24	2	0	0	0	0.01083	1	7914	7914		78.149	51.266	1	968530			47203	6232	27074	27075	57789	57789		735			-0.037581825624556586
SYMPTVSHL	9	Oxidation (M)	_SYM(Oxidation (M))PTVSHL_		SYM(1)PTVSHL		SYM(78)PTVSHL	0	0	1		nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	nc|ENSG00000168000|Q96G97-3|BSCL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8248291015625	2	525.749867	1049.48518	0.4851	0.00025504	0.15211	7.9971E-05	0.63721	0.00033501	525.749844768444	37.746	0.40828	37.844	37.628	38.037	0.097527					33	14	3	0	0	0	0.030157	1	7779	7779		78.149	44.047	1	776760			47204	6232	27074	27075	57790	57790		735			-0.037581825624556586
SYMPVIDVF	9	Oxidation (M)	_SYM(Oxidation (M))PVIDVF_		SYM(1)PVIDVF		SYM(50)PVIDVF	0	0	1		nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7623901367188	2	543.762443	1085.51033	0.21012	0.00011425	-1.3392	-0.00072821	-1.1291	-0.00061395	543.7614783775929	75.816	1.1096	75.816	75.449	76.559	0					82	39	3	0	0	0	0.057976	2	19440	19440;19513		49.933	29.479	1	681460			47205	6235	27075	27076	57791;57792	57791		736			-0.029001277598808883
SYMPVIDVF	9	Oxidation (M)	_SYM(Oxidation (M))PVIDVF_		SYM(1)PVIDVF		SYM(61)PVIDVF	0	0	1		nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7623901367188	2	543.762443	1085.51033	0.53299	0.00028982	-1.5456	-0.00084046	-1.0127	-0.00055064	543.7613369642247	75.7	0.73443	75.752	75.454	76.188	0.052368					73	26	3	0	0	0	0.027237	2	19417	19417;19501		61.357	31.795	1	694570			47206	6235	27075	27076	57793;57794	57793		736			-0.029001277598808883
SYMPVIDVF	9	Oxidation (M)	_SYM(Oxidation (M))PVIDVF_		SYM(1)PVIDVF		SYM(68)PVIDVF	0	0	1		nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENSG00000168014|ENST00000334126|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	nc|ENSG00000168014|Q4AC94-2|C2CD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.7619018554688	2	543.762443	1085.51033	0.60573	0.00032937	-1.5422	-0.00083859	-0.93648	-0.00050922	543.7613872417694	75.863	0.84685	75.831	75.443	76.29	-0.031487					67	30	3	0	0	0	0.017391	2	19447	19447;19506		68.081	33.978	1	785990			47207	6235	27075	27076	57795;57796	57795		736			-0.029001277598808883
SYMSSSGI	8	Unmodified	_SYMSSSGI_					0	0	0		nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENSG00000065618|ENST00000648076|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	nc|ENSG00000065618|Q9UMD9-2|COL17A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.19476318359375	2	416.181286	830.348019	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.274	1	35.349	34.849	35.849	0.075306								0	0	0	0.36961	1	7046	7046		5.7604	0	1				47208	822	27076	27077	57797	57797					-0.07394091442006356
SYMVKGMAF	9	2 Oxidation (M)	_SYM(Oxidation (M))VKGM(Oxidation (M))AF_		SYM(1)VKGM(1)AF		SYM(44)VKGM(44)AF	0	0	2		nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;IFT172|p.E810Nfs*30|1|0.18|ENSG00000138002|chr2:27461283-27461283|C/-|frameshift_variant;ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172;ENST00000475476.2_1_2:27707060-27712589:-|nuORF;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;IFT172|p.L286Tfs*42|1|0.19|ENSG00000138002|chr2:27480076-27480079|ATAA/-|frameshift_variant	nc|ENSG00000138002|Q9UG01-3|IFT172	nc|ENSG00000138002|Q9UG01-3|IFT172	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2401123046875	2	533.240821	1064.46709	0.38908	0.00020747	-0.34226	-0.00018251	0.046815	2.4964E-05	533.2403675198699	35.494	0.41313	35.574	35.459	35.872	0.080399					19	14	2	0	0	0	0.074552	1	7139	7139		43.772	25.637	1	239580			47209	4104	27077	27078	57798	57798		518;519			-0.06256640808805969
SYMVKGMAF	9	2 Oxidation (M)	_SYM(Oxidation (M))VKGM(Oxidation (M))AF_					0	0	2		nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;IFT172|p.E810Nfs*30|1|0.18|ENSG00000138002|chr2:27461283-27461283|C/-|frameshift_variant;ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172;ENST00000475476.2_1_2:27707060-27712589:-|nuORF;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;IFT172|p.L286Tfs*42|1|0.19|ENSG00000138002|chr2:27480076-27480079|ATAA/-|frameshift_variant	nc|ENSG00000138002|Q9UG01-3|IFT172	nc|ENSG00000138002|Q9UG01-3|IFT172	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	533.240821	1064.46709	0.16103	8.587E-05	0.42452	0.00022637	0.58555	0.00031224	533.2408653139371	35.467	0.4176	35.553	35.426	35.844	0.086246	-0.010512	0.00026578	NaN	43.772	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198370			47210	4104	27077	27078				518;519			-0.06256640808805969
SYMWTINNF	9	Oxidation (M)	_SYM(Oxidation (M))WTINNF_		SYM(1)WTINNF		SYM(130)WTINNF	0	0	1		ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.2605590820312	2	596.260599	1190.50665	0.33929	0.00020231	-0.042733	-2.548E-05	0.29656	0.00017683	596.2605136096521	73.378	0.68948	73.378	73.105	73.795	0					63	24	4	0	0	0	0.00063099	1	18777	18777		126.57	92.463	1	768660			47211	2987	27078	27079	57799	57799		374			-0.08098797533739344
SYMWTINNF	9	Oxidation (M)	_SYM(Oxidation (M))WTINNF_		SYM(1)WTINNF		SYM(100)WTINNF	0	0	1		ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.2606811523438	2	596.260599	1190.50665	0.366	0.00021823	-0.18268	-0.00010893	0.18332	0.00010931	596.2604550185288	73.364	0.65739	73.418	73.091	73.749	0.053841					57	23	3	0	0	0	0.0028542	2	18756	18708;18756		103.42	69.317	1	625080			47212	2987	27078	27079	57800;57801	57801		374			-0.08098797533739344
SYMWTINNF	9	Oxidation (M)	_SYM(Oxidation (M))WTINNF_		SYM(1)WTINNF		SYM(120)WTINNF	0	0	1		ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.260498046875	2	596.260599	1190.50665	0.40955	0.0002442	-0.27148	-0.00016187	0.13807	8.2327E-05	596.2603634254856	73.436	0.64423	73.407	73.126	73.77	-0.029305					59	23	3	0	0	0	0.0013683	1	18776	18776		118.07	87.432	1	695510			47213	2987	27078	27079	57802	57802		374			-0.08098797533739344
SYNDIFDL	8	Unmodified	_SYNDIFDL_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7270812988281	2	493.726915	985.439277	0.82204	0.00040586	-0.16032	-7.9156E-05	0.66171	0.00032671	493.7266281067626	78.155	0.7914	78.155	77.878	78.669	0					61	29	3	0	0	0	0.18275	1	20174	20174		46.021	6.0636	1	714100			47214	8529;12963	27079	27080	57803	57803					-0.05402504473067893
SYNDIFDL	8	Unmodified	_SYNDIFDL_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7268981933594	2	493.726915	985.439277	0.87007	0.00042958	-0.32451	-0.00016022	0.54556	0.00026936	493.7266077048351	78.228	0.9279	78.198	77.87	78.798	-0.030434					73	34	3	0	0	0	0.14491	1	20175	20175		71.134	10.744	1	583490			47215	8529;12963	27079	27080	57804	57804					-0.05402504473067893
SYNDIFDL	8	Unmodified	_SYNDIFDL_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	493.726915	985.439277	0.70604	0.00034859	-0.079819	-3.9409E-05	0.62622	0.00030918	493.726713506788	78.116	0.75632	78.174	77.927	78.683	0.058151	-0.0015234	8.8765E-05	NaN	71.134	57	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	601100			47216	8529;12963	27079	27080							-0.05402504473067893
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2625122070312	2	567.261122	1132.50769	-0.091051	-5.165E-05	0.65021	0.00036884	0.55916	0.00031719	567.2623386389291	98.002	2.3649	98.002	97.634	99.998	0					876	286	6	0	0	0	3.0646E-11	6	26211	26179;26211;26244;26278;26313;26348		193.29	135.82	1	35613000			47217	8529;12963	27080	27081	57805;57806;57807;57808;57809;57810	57806					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2777709960938	2	567.261122	1132.50769	-0.14582	-8.272E-05	-0.2186	-0.000124	-0.36442	-0.00020672	567.2611064087882	112.93	0.46004	112.93	112.62	113.08	0					78	55	2	0	0	0	0.29638	3	29321	29286;29321;29362		9.3831	2.66	1	41056			47218	8529;12963	27080	27081	57811;57812;57813	57812					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2794799804688	2	567.261122	1132.50769	-0.14573	-8.2666E-05	0.1411	8.0039E-05	-0.0046309	-2.6269E-06	567.2611885186689	113.75	0.19794	113.75	113.69	113.88	0					35	24	2	0	0	0	0.29638	1	29553	29553		9.3831	2.66	1	33217			47219	8529;12963	27080	27081	57814	57814					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2789916992188	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.33	1	111.33	110.83	111.83	0								0	0	0	0.24066	1	28961	28961		9.3831	0	1				47220	8529;12963	27080	27081	57815	57815					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2796020507812	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.72	1	111.72	111.22	112.22	0								0	0	0	0.24066	1	29052	29052		9.3831	0	1				47221	8529;12963	27080	27081	57816	57816					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2791137695312	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.01	1	112.01	111.51	112.51	0								0	0	0	0.24066	1	29127	29127		9.3831	0	1				47222	8529;12963	27080	27081	57817	57817					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2784423828125	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.29	1	113.29	112.79	113.79	0								0	0	0	0.22666	1	29426	29426		13.906	0	1				47223	8529;12963	27080	27081	57818	57818					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2793579101562	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.56	1	113.56	113.06	114.06	0								0	0	0	0.2362	1	29494	29494		10.824	0.75	1				47224	8529;12963	27080	27081	57819	57819					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2772827148438	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.06	1	114.06	113.56	114.56	0								0	0	0	0.24066	1	29609	29609		9.3831	0	1				47225	8529;12963	27080	27081	57820	57820					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2775268554688	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.27	1	114.27	113.77	114.77	0								0	0	0	0.22666	1	29650	29650		13.906	0	1				47226	8529;12963	27080	27081	57821	57821					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2801513671875	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.38	1	114.38	113.88	114.88	0								0	0	0	0.24066	1	29678	29678		9.3831	0	1				47227	8529;12963	27080	27081	57822	57822					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2799072265625	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.5	1	114.5	114	115	0								0	0	0	0.2505	1	29705	29705		6.2058	0	1				47228	8529;12963	27080	27081	57823	57823					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2791748046875	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.81	1	114.81	114.31	115.31	0								0	0	0	0.24066	1	29775	29775		9.3831	0	1				47229	8529;12963	27080	27081	57824	57824					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.279541015625	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.13	1	115.13	114.63	115.63	0								0	0	0	0.24066	1	29847	29847		9.3831	0	1				47230	8529;12963	27080	27081	57825	57825					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2788696289062	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.62	1	115.62	115.12	116.12	0								0	0	0	0.24066	1	29959	29959		9.3831	0	1				47231	8529;12963	27080	27081	57826	57826					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2796020507812	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.74	1	115.74	115.24	116.24	0								0	0	0	0.24066	1	29986	29986		9.3831	0	1				47232	8529;12963	27080	27081	57827	57827					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2781372070312	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.17	1	116.17	115.67	116.67	0								0	0	0	0.24066	1	30083	30083		9.3831	0	1				47233	8529;12963	27080	27081	57828	57828					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2789916992188	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.36	1	118.36	117.86	118.86	0								0	0	0	0.2575	1	30577	30577		3.9444	0	1				47234	8529;12963	27080	27081	57829	57829					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.27880859375	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.86	1	119.86	119.36	120.36	0								0	0	0	0.25197	1	30907	30907		5.7319	0	1				47235	8529;12963	27080	27081	57830	57830					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2623291015625	2	567.261122	1132.50769	0.19051	0.00010807	0.32803	0.00018608	0.51854	0.00029415	567.2621922684604	97.922	2.3847	97.983	97.582	99.966	0.061523					999	299	6	0	0	0	2.4752E-08	7	26198	26165;26198;26230;26262;26299;26333;26366		179.17	121.7	1	54284000			47236	8529;12963	27080	27081	57831;57832;57833;57834;57835;57836;57837	57832					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2794189453125	2	567.261122	1132.50769	0.15736	8.9264E-05	-0.51414	-0.00029165	-0.35678	-0.00020239	567.2609480654845	112.97	0.15192	112.96	112.9	113.05	-0.017303					25	17	2	0	0	0	0.27726	1	29392	29392		12.241	4.3305	1	33746			47237	8529;12963	27080	27081	57838	57838					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2799682617188	2	567.261122	1132.50769	0.15731	8.9234E-05	-0.53624	-0.00030419	-0.37894	-0.00021496	567.2608984508518	113.46	0.26289	113.44	113.35	113.61	-0.017303					52	32	2	0	0	0	0.27726	2	29511	29479;29511		12.241	5.5175	1	28752			47238	8529;12963	27080	27081	57839;57840	57840					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.27783203125	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.52	1	111.51	111.01	112.01	-0.013939								0	0	0	0.24066	1	29013	29013		9.3831	0	1				47239	8529;12963	27080	27081	57841	57841					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2780151367188	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.71	1	111.7	111.2	112.2	-0.015625								0	0	0	0.24066	1	29060	29060		9.3831	0	1				47240	8529;12963	27080	27081	57842	57842					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2777709960938	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.33	1	112.32	111.82	112.82	-0.015625								0	0	0	0.22666	1	29221	29221		13.906	0	1				47241	8529;12963	27080	27081	57843	57843					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2786254882812	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.69	1	112.67	112.17	113.17	-0.015625								0	0	0	0.24066	1	29311	29311		9.3831	0	1				47242	8529;12963	27080	27081	57844	57844					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2780151367188	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.91	1	112.9	112.4	113.4	-0.017303								0	0	0	0.24066	1	29361	29361		9.3831	0	1				47243	8529;12963	27080	27081	57845	57845					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.27880859375	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.74	1	113.72	113.22	114.22	-0.017303								0	0	0	0.24066	1	29558	29558		9.3831	0	1				47244	8529;12963	27080	27081	57846	57846					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.280029296875	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.53	1	114.51	114.01	115.01	-0.019096								0	0	0	0.24066	1	29735	29735		9.3831	0	1				47245	8529;12963	27080	27081	57847	57847					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2794189453125	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.91	1	114.89	114.39	115.39	-0.019096								0	0	0	0.24066	1	29815	29815		9.3831	0	1				47246	8529;12963	27080	27081	57848	57848					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2789916992188	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.05	1	115.02	114.52	115.52	-0.020988								0	0	0	0.24066	1	29848	29848		9.3831	0	1				47247	8529;12963	27080	27081	57849	57849					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2803344726562	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.71	1	115.69	115.19	116.19	-0.020988								0	0	0	0.22666	1	29999	29999		13.906	0	1				47248	8529;12963	27080	27081	57850	57850					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.278076171875	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.85	1	115.83	115.33	116.33	-0.020988								0	0	0	0.24066	1	30029	30029		9.3831	0	1				47249	8529;12963	27080	27081	57851	57851					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2794799804688	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.34	1	116.31	115.81	116.81	-0.022781								0	0	0	0.22666	1	30140	30140		13.906	0	1				47250	8529;12963	27080	27081	57852	57852					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2792358398438	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.6	1	116.58	116.08	117.08	-0.022781								0	0	0	0.24066	1	30203	30203		9.3831	0	1				47251	8529;12963	27080	27081	57853	57853					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2794189453125	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.21	1	117.18	116.68	117.68	-0.024147								0	0	0	0.24066	1	30345	30345		9.3831	0	1				47252	8529;12963	27080	27081	57854	57854					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2791137695312	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.15	1	118.13	117.63	118.63	-0.024147								0	0	0	0.24066	1	30555	30555		9.3831	0	1				47253	8529;12963	27080	27081	57855	57855					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2625122070312	2	567.261122	1132.50769	0.24063	0.0001365	0.27174	0.00015415	0.51237	0.00029065	567.2621229701485	98.046	2.4915	98.039	97.629	100.12	-0.0068283					1052	303	6	0	0	0	2.4232E-17	8	26257	26214;26250;26257;26285;26320;26357;26391;26425		223.81	166.34	1	64401000			47254	8529;12963	27080	27081	57856;57857;57858;57859;57860;57861;57862;57863	57858					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2791748046875	2	567.261122	1132.50769	0.2059	0.0001168	-0.40937	-0.00023222	-0.20347	-0.00011542	567.260940424895	113.63	0.35091	113.65	113.51	113.86	0.014824					68	43	2	0	0	0	0.24467	2	29592	29555;29592		17.113	7.039	1	25779			47255	8529;12963	27080	27081	57864;57865	57865					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2799072265625	2	567.261122	1132.50769	0.20597	0.00011684	-0.49553	-0.00028109	-0.28956	-0.00016426	567.2609544211128	113.96	0.36175	113.97	113.83	114.19	0.016708					67	43	2	0	0	0	0.27726	3	29626	29626;29659;29689		12.241	5.5175	1	35330			47256	8529;12963	27080	27081	57866;57867;57868	57866					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.27978515625	2	567.261122	1132.50769	0.20592	0.00011681	-0.61201	-0.00034717	-0.40609	-0.00023036	567.2608627835434	117.63	0.21431	117.66	117.56	117.78	0.023476					38	26	2	0	0	0	0.29638	1	30471	30471		9.3831	2.66	1	17208			47257	8529;12963	27080	27081	57869	57869					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2771606445312	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.65	1	111.66	111.16	112.16	0.01152								0	0	0	0.24066	1	29065	29065		9.3831	0	1				47258	8529;12963	27080	27081	57870	57870					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2781982421875	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.89	1	111.9	111.4	112.4	0.0131								0	0	0	0.24066	1	29127	29127		9.3831	0	1				47259	8529;12963	27080	27081	57871	57871					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.278564453125	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.02	1	112.03	111.53	112.53	0.0131								0	0	0	0.24066	1	29163	29163		9.3831	0	1				47260	8529;12963	27080	27081	57872	57872					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2789916992188	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.15	1	112.16	111.66	112.66	0.0131								0	0	0	0.24066	1	29193	29193		9.3831	0	1				47261	8529;12963	27080	27081	57873	57873					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2789306640625	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.31	1	112.33	111.83	112.83	0.0131								0	0	0	0.24066	1	29235	29235		9.3831	0	1				47262	8529;12963	27080	27081	57874	57874					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2774047851562	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.94	1	112.95	112.45	113.45	0.014824								0	0	0	0.24066	1	29387	29387		9.3831	0	1				47263	8529;12963	27080	27081	57875	57875					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2783813476562	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.21	1	113.22	112.72	113.72	0.014824								0	0	0	0.24066	1	29455	29455		9.3831	0	1				47264	8529;12963	27080	27081	57876	57876					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2781982421875	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.33	1	114.35	113.85	114.85	0.016708								0	0	0	0.22666	1	29733	29733		13.906	0	1				47265	8529;12963	27080	27081	57877	57877					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.279052734375	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.25	1	115.27	114.77	115.77	0.018738								0	0	0	0.24066	1	29946	29946		9.3831	0	1				47266	8529;12963	27080	27081	57878	57878					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2803344726562	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.5	1	115.52	115.02	116.02	0.018738								0	0	0	0.25197	1	29996	29996		5.7319	0	1				47267	8529;12963	27080	27081	57879	57879					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2786254882812	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.58	1	116.6	116.1	117.1	0.020988								0	0	0	0.24066	1	30247	30247		9.3831	0	1				47268	8529;12963	27080	27081	57880	57880					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.278564453125	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.7	1	116.73	116.23	117.23	0.020988								0	0	0	0.24066	1	30274	30274		9.3831	0	1				47269	8529;12963	27080	27081	57881	57881					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2787475585938	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.96	1	116.98	116.48	117.48	0.020988								0	0	0	0.24066	1	30333	30333		9.3831	0	1				47270	8529;12963	27080	27081	57882	57882					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2792358398438	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.4	1	117.43	116.93	117.93	0.023476								0	0	0	0.24066	1	30433	30433		9.3831	0	1				47271	8529;12963	27080	27081	57883	57883					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2799072265625	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.54	1	119.57	119.07	120.07	0.027756								0	0	0	0.2505	1	30914	30914		6.2058	0	1				47272	8529;12963	27080	27081	57884	57884					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2786865234375	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.85	1	119.88	119.38	120.38	0.027756								0	0	0	0.24066	1	30984	30984		9.3831	0	1				47273	8529;12963	27080	27081	57885	57885					-0.05326259893217866
SYNDIFDLF	9	Unmodified	_SYNDIFDLF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.330078125	2	567.261122	1132.50769	0.2059	0.0001168	-0.60404	-0.00034265	-0.39814	-0.00022585	567.260956382252	118.16	0.11549	118.18	118.15	118.27	0.023476					18	14	2	0	0	0	0.26068	1	30604	30604		3.2813	0	1	14678			47274	8529;12963	27080	27081	57886	57886					-0.05326259893217866
SYNDYVREF	9	Unmodified	_SYNDYVREF_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.7674560546875	2	596.767103	1191.51965	0.52635	0.00031411	-0.37543	-0.00022404	0.15092	9.0065E-05	596.7670110307267	51.595	1.025	51.595	51.271	52.296	0					103	37	5	0	0	0	6.8441E-24	1	12050	12050		236.66	187.11	1	6498000			47275	1235	27081	27082	57887	57887					-0.06844643150020602
SYNDYVREF	9	Unmodified	_SYNDYVREF_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.7673950195312	2	596.767103	1191.51965	0.49031	0.0002926	-0.37422	-0.00022332	0.11609	6.9278E-05	596.7670223105212	51.537	0.98416	51.584	51.321	52.305	0.046574					91	35	4	0	0	0	6.8441E-24	1	12051	12051		236.66	190.96	1	6763600			47276	1235	27081	27082	57888	57888					-0.06844643150020602
SYNDYVREF	9	Unmodified	_SYNDYVREF_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.767822265625	2	596.767103	1191.51965	0.27835	0.00016611	-0.256	-0.00015277	0.02235	1.3338E-05	596.7671002554317	51.771	1.0274	51.78	51.452	52.48	0.0095634					106	37	4	0	0	0	6.8441E-24	3	12056	12056;12102;12153		236.66	189.07	1	6844300			47277	1235	27081	27082	57889;57890;57891	57889					-0.06844643150020602
SYNFSKPIF	9	Unmodified	_SYNFSKPIF_					0	0	0			REV__ENST00000492220.1_1_1:150381497-150445807:+|nuORF	REV__ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7818603515625	2	551.782025	1101.5495	1.0441	0.00057609	-1.708	-0.00094244	-0.66393	-0.00036635	551.7807888347988	56.108	0.68436	56.108	55.787	56.471	0					50	24	3	0	0	0	0.10111	1	13421	13421		42.095	0	1	3264800			47278	17038	27082	27083	57892	57892					0.0027834058598728006
SYNFSKPIF	9	Unmodified	_SYNFSKPIF_					0	0	0			REV__ENST00000492220.1_1_1:150381497-150445807:+|nuORF	REV__ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7817993164062	2	551.782025	1101.5495	0.92724	0.00051163	-0.65787	-0.000363	0.26937	0.00014864	551.7809189973244	55.986	0.67383	56.057	55.804	56.477	0.070885					62	24	4	0	0	0	0.1524	1	13405	13405		39.957	11.47	1	3294600			47279	17038	27082	27083	57893	57893					0.0027834058598728006
SYNFSKPIF	9	Unmodified	_SYNFSKPIF_					0	0	0			REV__ENST00000492220.1_1_1:150381497-150445807:+|nuORF	REV__ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.7816772460938	2	551.782025	1101.5495	0.97206	0.00053637	-1.3923	-0.00076827	-0.42028	-0.0002319	551.781189350336	56.243	1.1737	56.224	55.942	57.115	-0.019081					74	42	2	0	0	0	0.18943	1	13464	13464		30.225	3.8835	1	3632800			47280	17038	27082	27083	57894	57894					0.0027834058598728006
SYNKYHNNCYK	11	Unmodified	_SYNKYHNNCYK_					0	0	0		ENSG00000111181|ENST00000684302|SLC6A12;ENST00000545058.5_1_12:304467-308154:-|nuORF	ENSG00000111181|ENST00000684302|SLC6A12	ENSG00000111181|ENST00000684302|SLC6A12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.24786376953125	3	478.547071	1432.61938	0.32449	0.00015528	-0.78476	-0.00037555	-0.46028	-0.00022026	478.5465535620227	33.631	0.98489	33.631	33.119	34.104	0					77	35	3	0	0	0	0.33296	1	6462	6462		2.6312	1.5215	1	166900			47281	2350	27083	27084	57895	57895					-0.07962148807678204
SYNLNYHKL	9	Unmodified	_SYNLNYHKL_					0	0	0		ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	ENSG00000171109|ENST00000471841|MFN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.3695068359375	2	576.29583	1150.57711	0.32462	0.00018708	0.18714	0.00010785	0.51175	0.00029492	576.295935645336	36.396	0.33298	36.396	36.229	36.562	0					15	11	2	0	0	0	0.20167	1	7377	7377		29.082	16.039	1	220430			47282	6513	27084	27085	57896	57896					0.007842438462375867
SYNNFFRMF	9	Oxidation (M)	_SYNNFFRM(Oxidation (M))F_		SYNNFFRM(1)F		SYNNFFRM(170)F	0	0	1		nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000156475|Q00005-3|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A	nc|ENSG00000156475|Q00005-4|PPP2R2B	nc|ENSG00000156475|Q00005-4|PPP2R2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.274169921875	2	621.274041	1240.53353	0.30771	0.00019117	-0.12285	-7.6323E-05	0.18486	0.00011485	621.2740062605338	62.888	1.3894	62.888	62.552	63.941	0					156	50	5	0	0	0	3.6949E-07	3	15515	15515;15561;15613		165.72	165.72	1	6351600			47283	12772	27085	27086	57897;57898;57899	57897		978			-0.07711688922563553
SYNNFFRMF	9	Oxidation (M)	_SYNNFFRM(Oxidation (M))F_		SYNNFFRM(1)F		SYNNFFRM(180)F	0	0	1		nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000156475|Q00005-3|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A	nc|ENSG00000156475|Q00005-4|PPP2R2B	nc|ENSG00000156475|Q00005-4|PPP2R2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.2740478515625	2	621.274041	1240.53353	0.15988	9.9329E-05	0.011274	7.0043E-06	0.17115	0.00010633	621.2741214291094	62.746	1.3059	62.841	62.57	63.876	0.095722					128	46	5	0	0	0	2.4752E-08	4	15473	15473;15517;15559;15609		179.17	165.72	1	6534600			47284	12772	27085	27086	57900;57901;57902;57903	57900		978			-0.07711688922563553
SYNNFFRMF	9	Oxidation (M)	_SYNNFFRM(Oxidation (M))F_		SYNNFFRM(1)F		SYNNFFRM(180)F	0	0	1		nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;ENST00000517754.1_1_8:26221160-26227926:+|nuORF;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000156475|Q00005-3|PPP2R2B;ENSG00000175470|ENST00000455566|PPP2R2D;nc|ENSG00000221914|P63151-2|PPP2R2A	nc|ENSG00000156475|Q00005-4|PPP2R2B	nc|ENSG00000156475|Q00005-4|PPP2R2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.2741088867188	2	621.274041	1240.53353	0.16004	9.9431E-05	-0.0026791	-1.6645E-06	0.15736	9.7767E-05	621.2741142854236	62.937	1.449	62.929	62.514	63.963	-0.0085564					159	52	5	0	0	0	2.4752E-08	5	15505	15505;15549;15597;15641;15695		179.17	157.64	1	7451500			47285	12772	27085	27086	57904;57905;57906;57907;57908	57904		978			-0.07711688922563553
SYNPAENAVLL	11	Unmodified	_SYNPAENAVLL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.8065185546875	2	595.806228	1189.5979	0.70933	0.00042263	-0.16489	-9.824E-05	0.54445	0.00032439	595.8060149405292	65.763	0.80762	65.763	65.431	66.239	0					76	28	4	0	0	0	9.0647E-06	3	16441	16393;16441;16500		125.18	87.006	1	1361400			47286	3034	27086	27087	57909;57910;57911	57910					0.010687894352258809
SYNPAENAVLL	11	Unmodified	_SYNPAENAVLL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.806396484375	2	595.806228	1189.5979	0.54415	0.00032421	-0.15269	-9.0975E-05	0.39146	0.00023323	595.8060961886323	65.633	0.84577	65.722	65.434	66.279	0.088882					81	30	5	0	0	0	9.0647E-06	3	16393	16348;16393;16447		125.18	83.328	1	1454800			47287	3034	27086	27087	57912;57913;57914	57913					0.010687894352258809
SYNPAENAVLL	11	Unmodified	_SYNPAENAVLL_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.8065185546875	2	595.806228	1189.5979	0.56615	0.00033731	-0.045398	-2.7048E-05	0.52075	0.00031026	595.8061313816359	65.741	0.77132	65.729	65.398	66.169	-0.011337					65	27	3	0	0	0	9.0647E-06	2	16418	16418;16478		125.18	93.913	1	1290700			47288	3034	27086	27087	57915;57916	57915					0.010687894352258809
SYNPITHQL	9	Unmodified	_SYNPITHQL_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.7758178710938	2	536.774731	1071.53491	0.45861	0.00024617	0.53532	0.00028735	0.99393	0.00053352	536.7750112161698	41.763	0.6094	41.763	41.504	42.113	0					42	26	2	0	0	0	0.00013073	2	9017	9017;9066		135.86	82.031	1	3558500			47289	5756	27087	27088	57917;57918	57917					0.0020026843783398363
SYNPITHQL	9	Unmodified	_SYNPITHQL_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.7752685546875	2	536.774731	1071.53491	0.26274	0.00014103	0.57638	0.00030939	0.83912	0.00045042	536.7749407777454	41.496	0.40298	41.586	41.273	41.676	0.090248					35	15	3	0	0	0	0.0019382	2	8957	8911;8957		110.79	70.843	1	2555200			47290	5756	27087	27088	57919;57920	57920					0.0020026843783398363
SYNPITHQL	9	Unmodified	_SYNPITHQL_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7750854492188	2	536.774731	1071.53491	0.6153	0.00033028	0.054977	2.951E-05	0.67027	0.00035979	536.7747802491931	41.37	0.53844	41.466	41.177	41.716	0.096626					41	21	3	0	0	0	0.0019382	2	8888	8888;8949		110.79	70.843	1	3139200			47291	5756	27087	27088	57921;57922	57921					0.0020026843783398363
SYNPPASFMH	10	Unmodified	_SYNPPASFMH_					0	0	0		ENSG00000173838|ENST00000311269|MARCHF10	ENSG00000173838|ENST00000311269|MARCHF10	ENSG00000173838|ENST00000311269|MARCHF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.753173828125	2	575.752941	1149.49133	0.24772	0.00014262	1.0135	0.00058354	1.2612	0.00072617	575.7535300508671	74.135	0.47713	74.104	73.91	74.387	-0.030663					33	16	3	0	0	0	0.36786	1	18983	18983		9.3831	2.66	1	602580			47292	6754	27088	27089	57923	57923					-0.07743664330928368
SYNRGDSTF	9	Unmodified	_SYNRGDSTF_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.8035888671875	2	523.73052	1045.44649	0.15376	8.0531E-05	0.085244	4.4645E-05	0.23901	0.00012518	523.7306135017246	25.494	0.37064	25.438	25.25	25.62	-0.055931					17	12	2	0	0	0	0.24636	1	4085	4085		16.149	5.3252	1	102390			47293	6557	27089	27090	57924	57924					-0.07441771872618119
SYNRGDSTF	9	Unmodified	_SYNRGDSTF_					0	0	0		ENSG00000171560|ENST00000403106|FGA;nc|ENSG00000171560|P02671|FGA	ENSG00000171560|ENST00000403106|FGA	ENSG00000171560|ENST00000403106|FGA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	523.73052	1045.44649	0.372	0.00019483	0.30602	0.00016027	0.67802	0.0003551	523.7306480537152	25.458	0.32389	25.458	25.239	25.562	0	0.0022438	0.00011651	NaN	26.268	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75447			47294	6557	27089	27090							-0.07441771872618119
SYNRTFMKL	9	Oxidation (M)	_SYNRTFM(Oxidation (M))KL_		SYNRTFM(1)KL		SYNRTFM(50)KL	0	0	1		ENSG00000111885|ENST00000368468|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.2975463867188	2	588.297516	1174.58048	0.4837	0.00028456	-0.63041	-0.00037087	-0.14671	-8.6309E-05	588.2973779975126	29.981	0.86741	29.981	29.686	30.553	0					84	30	4	0	0	0	0.059067	1	5412	5412		49.527	27.99	1	473570			47295	2400	27090	27091	57925	57925		295			0.00017170628575513547
SYNSHYFRI	9	Unmodified	_SYNSHYFRI_					0	0	0		TLR8|p.T750Rfs*47|1|0.05|ENSG00000101916|chrX:12921288-12921289|-/GAGTAGTTTGTTTC|frameshift_variant;ENSG00000101916|ENST00000218032|TLR8;nc|ENSG00000101916|Q9NR97-2|TLR8	TLR8|p.T750Rfs*47|1|0.05|ENSG00000101916|chrX:12921288-12921289|-/GAGTAGTTTGTTTC|frameshift_variant	TLR8|p.T750Rfs*47|1|0.05|ENSG00000101916|chrX:12921288-12921289|-/GAGTAGTTTGTTTC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2759399414062	2	593.78563	1185.55671	0.47342	0.00028111	0.42131	0.00025017	0.89473	0.00053128	593.7855658574153	40.533	0.29732	40.632	40.453	40.75	0.099403					12	10	2	0	0	0	0.23749	1	8662	8662		15.248	9.0427	1	153510			47296	1729	27091	27092	57926	57926					-0.028649268135723105
SYNYPPVIF	9	Unmodified	_SYNYPPVIF_					0	0	0			REV__nc|ENSG00000099715|Q9BZA8-3|PCDH11Y	REV__nc|ENSG00000099715|Q9BZA8-3|PCDH11Y	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3011474609375	2	550.276575	1098.5386	0.56193	0.00030922	-1.4492	-0.00079743	-0.88722	-0.00048822	550.2760495876993	63.344	0.84089	63.44	63.148	63.989	0.095722					55	29	3	0	0	0	0.21905	1	15720	15720		23.148	2.6948	1	368000	+		47297	14135	27092	27093	57927	57927					-0.006730617883022205
SYNYPPVIF	9	Unmodified	_SYNYPPVIF_					0	0	0			REV__nc|ENSG00000099715|Q9BZA8-3|PCDH11Y	REV__nc|ENSG00000099715|Q9BZA8-3|PCDH11Y	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	550.276575	1098.5386	0.56864	0.00031291	-0.047113	-2.5925E-05	0.52153	0.00028698	550.2762170012455	63.519	0.8333	63.51	63.242	64.075	-0.0085526	0.032893	0.00051397	NaN	23.148	64	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	394360	+		47298	14135	27092	27093							-0.006730617883022205
SYPATITT	8	Unmodified	_SYPATITT_					0	0	0		nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH;ENST00000588559.5_1_19:55705613-55720813:-|nuORF	nc|ENSG00000080031|Q9HD43-3|PTPRH	nc|ENSG00000080031|Q9HD43-3|PTPRH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.2734375	2	427.218726	852.422899	-0.1408	-6.0152E-05	-0.28774	-0.00012293	-0.42854	-0.00018308	427.2184202357579	69.607	0.47847	69.585	69.435	69.913	-0.022087					24	17	2	0	0	0	0.28235	1	17645	17645		23.148	0	1	107900			47299	1148	27093	27094	57928	57928					-0.00921585639150635
SYPCLTPPQR	10	Unmodified	_SYPCLTPPQR_					0	0	0			REV__ENST00000568546.5_3_16:2029772-2030570:+|nuORF	REV__ENST00000568546.5_3_16:2029772-2030570:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.289306640625	2	581.289691	1160.56483	0.32924	0.00019138	-0.67263	-0.00039099	-0.3434	-0.00019961	581.2891711889031	71.458	1.3088	71.458	70.823	72.132	0					111	46	3	0	0	0	0.2811	1	18166	18166		22.736	0	1	2488000	+		47300	22396	27094	27095	57929	57929					-0.009031158884909019
SYPDLLPTF	9	Unmodified	_SYPDLLPTF_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.768798828125	2	526.768583	1051.52261	0.75727	0.00039891	-0.24296	-0.00012798	0.51431	0.00027092	526.768480620879	84.253	1.9948	84.253	83.768	85.763	0					195	78	5	0	0	0	7.827E-05	5	22068	21980;22023;22068;22112;22158		144.35	80.787	1	8220900			47301	4521	27095	27096	57930;57931;57932;57933;57934	57932					-0.0010876802521124773
SYPDLLPTF	9	Unmodified	_SYPDLLPTF_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7688598632812	2	526.768583	1051.52261	0.65776	0.00034649	-0.076424	-4.0258E-05	0.58134	0.00030623	526.7685415228904	84.157	1.9276	84.234	83.762	85.689	0.077095					212	76	5	0	0	0	5.6213E-07	5	21991	21947;21991;22037;22081;22129		158.2	94.64	1	8580700			47302	4521	27095	27096	57935;57936;57937;57938;57939	57936					-0.0010876802521124773
SYPDLLPTF	9	Unmodified	_SYPDLLPTF_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7688598632812	2	526.768583	1051.52261	0.71119	0.00037463	-0.11165	-5.8812E-05	0.59955	0.00031582	526.7685366770796	84.182	2.706	84.165	83.788	86.494	-0.016823					238	109	5	0	0	0	5.6213E-07	5	22047	21961;22002;22047;22092;22134		158.2	94.64	1	9731400			47303	4521	27095	27096	57940;57941;57942;57943;57944	57942					-0.0010876802521124773
SYPDNFLHI	9	Unmodified	_SYPDNFLHI_					0	0	0		nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.2696533203125	2	553.269281	1104.52401	0.39253	0.00021718	0.089316	4.9416E-05	0.48185	0.00026659	553.2694395062999	63.303	1.2817	63.303	62.956	64.238	0					121	46	5	0	0	0	0.011693	3	15678	15629;15678;15728		76.825	49.196	1	6966500			47304	724	27096	27097	57945;57946;57947	57946					-0.02407133936435457
SYPDNFLHI	9	Unmodified	_SYPDNFLHI_					0	0	0		nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.2695922851562	2	553.269281	1104.52401	0.44778	0.00024774	-0.15813	-8.7487E-05	0.28965	0.00016026	553.2694395101151	63.145	1.164	63.241	62.905	64.069	0.095722					128	41	5	0	0	0	0.0032746	5	15584	15584;15633;15684;15728;15752		100.09	67.785	1	7321400			47305	724	27096	27097	57948;57949;57950;57951;57952	57948					-0.02407133936435457
SYPDNFLHI	9	Unmodified	_SYPDNFLHI_					0	0	0		nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	nc|ENSG00000057663|Q9H1Y0-2|ATG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.2694702148438	2	553.269281	1104.52401	0.38714	0.0002142	0.0631	3.4911E-05	0.45024	0.00024911	553.2694046260572	63.292	1.1665	63.284	62.963	64.129	-0.0085564					112	41	5	0	0	0	0.0032746	3	15681	15626;15681;15733		100.09	65.689	1	6675700			47306	724	27096	27097	57953;57954;57955	57954					-0.02407133936435457
SYPDVSAMIL	10	Oxidation (M)	_SYPDVSAM(Oxidation (M))IL_		SYPDVSAM(1)IL		SYPDVSAM(100)IL	0	0	1		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;nc|ENSG00000204427|O95870-2|ABHD16A;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000477016.5_1_6:31656024-31659403:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3052978515625	2	556.270632	1110.52671	0.31848	0.00017716	1.4984	0.00083354	1.8169	0.0010107	556.2711759304524	66.848	0.70836	66.848	66.63	67.338	0					44	24	2	0	0	0	0.011479	1	16786	16786		99.799	69.162	1	761330			47307	8226	27097	27098	57956	57956		890			-0.024130465938014822
SYPDVSAMIL	10	Oxidation (M)	_SYPDVSAM(Oxidation (M))IL_		SYPDVSAM(1)IL		SYPDVSAM(89)IL	0	0	1		ENST00000492084.5_1_6:31654991-31670409:-|nuORF;nc|ENSG00000204427|O95870-2|ABHD16A;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000477016.5_1_6:31656024-31659403:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	ENST00000492084.5_1_6:31654991-31670409:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3054809570312	2	556.270632	1110.52671	0.085028	4.7299E-05	1.8838	0.0010479	1.9688	0.0010952	556.2712924169327	66.924	0.82437	66.91	66.572	67.396	-0.013588					49	28	2	0	0	0	0.018176	1	16787	16787		88.954	66.218	1	888730			47308	8226	27097	27098	57957	57957		890			-0.024130465938014822
SYPFTFEAF	9	Unmodified	_SYPFTFEAF_					0	0	0		nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.7529907226562	2	554.752933	1107.49131	0.52444	0.00029093	0.0034626	1.9209E-06	0.5279	0.00029285	554.7528078013083	85.495	1.3601	85.495	85.125	86.485	0					127	52	4	0	0	0	0.00012782	3	22485	22435;22485;22535		136.33	78.862	1	1149600			47309	434	27098	27099	57958;57959;57960	57959					-0.05813341059274535
SYPFTFEAF	9	Unmodified	_SYPFTFEAF_					0	0	0		nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.7529907226562	2	554.752933	1107.49131	0.48973	0.00027168	-0.021659	-1.2015E-05	0.46807	0.00025966	554.7528437262341	85.398	1.4186	85.478	85.129	86.547	0.080887					135	54	4	0	0	0	0.00094673	3	22387	22387;22438;22487		123.45	73.597	1	1081400			47310	434	27098	27099	57961;57962;57963	57961					-0.05813341059274535
SYPFTFEAF	9	Unmodified	_SYPFTFEAF_					0	0	0		nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	nc|ENSG00000011143|Q9NXB0-2|MKS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.7532348632812	2	554.752933	1107.49131	0.46521	0.00025808	0.11321	6.2805E-05	0.57842	0.00032088	554.7528573472782	85.512	1.3588	85.5	85.139	86.498	-0.01223					129	51	4	0	0	0	0.00012782	3	22413	22413;22460;22510		136.33	43.511	1	1309400			47311	434	27098	27099	57964;57965;57966	57964					-0.05813341059274535
SYPGLCQSPF	10	Unmodified	_SYPGLCQSPF_					0	0	0		ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	ENSG00000167548|ENST00000301067|KMT2D	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7598266601562	2	549.749867	1097.48518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.177	1	78.177	77.677	78.677	0								0	0	0	0.33945	1	20214	20214		19.257	7.0163	1				47312	6186	27099	27100	57967	57967					-0.059661825624516496
SYPGSSYIF	9	Unmodified	_SYPGSSYIF_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;ENST00000460777.1_1_1:6609570-6610501:-|nuORF;ENST00000464665.1_1_1:6609570-6614245:-|nuORF	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8319091796875	2	510.737283	1019.46001	0.57934	0.00029589	-0.59335	-0.00030305	-0.014017	-7.159E-06	510.7370233267428	65.945	0.52304	65.945	65.66	66.183	0					27	18	2	0	0	0	0.090484	1	16475	16475		54.774	16.8	1	232770			47313	5568	27100	27101	57968	57968					-0.04893914093395324
SYPGSSYIF	9	Unmodified	_SYPGSSYIF_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;ENST00000460777.1_1_1:6609570-6610501:-|nuORF;ENST00000464665.1_1_1:6609570-6614245:-|nuORF	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.83209228515625	2	510.737283	1019.46001	0.4856	0.00024802	-0.31419	-0.00016047	0.17141	8.7548E-05	510.7370543000059	65.754	0.5108	65.843	65.628	66.139	0.088882					32	18	2	0	0	0	0.065123	1	16436	16436		64.236	18.215	1	219290			47314	5568	27100	27101	57969	57969					-0.04893914093395324
SYPGSSYIF	9	Unmodified	_SYPGSSYIF_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;ENST00000460777.1_1_1:6609570-6610501:-|nuORF;ENST00000464665.1_1_1:6609570-6614245:-|nuORF	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.8319396972656	2	510.737283	1019.46001	0.38998	0.00019918	-0.095157	-4.86E-05	0.29482	0.00015058	510.73710761624346	65.89	0.47545	65.879	65.641	66.117	-0.011337					30	16	2	0	0	0	0.065123	1	16465	16465		64.236	26.262	1	285600			47315	5568	27100	27101	57970	57970					-0.04893914093395324
SYPKELMKF	9	Unmodified	_SYPKELMKF_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.8157348632812	2	571.79936	1141.58417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.349	1	64.34	63.84	64.84	-0.0095291								0	0	0	0.15265	1	15979	15979		34.102	1.3168	1				47316	7500	27101	27102	57971	57971					0.01903840402451351
SYPKIIEEF	9	Unmodified	_SYPKIIEEF_					0	0	0		nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;FANCD2|p.H550Sfs*5|1|0.06|ENSG00000144554|chr3:10052488-10052489|-/T|frameshift_variant;nc|ENSG00000144554|Q9BXW9-4|FANCD2	nc|ENSG00000144554|Q9BXW9-3|FANCD2	nc|ENSG00000144554|Q9BXW9-3|FANCD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.314697265625	2	563.294965	1124.57538	0.41875	0.00023588	-0.23108	-0.00013016	0.18767	0.00010571	563.2943671622311	60.466	0.29087	60.455	60.223	60.514	-0.011486					15	10	3	0	0	0	0.22674	1	14799	14799		22.736	10.205	1	355590			47317	4592	27102	27103	57972	57972					0.018071900376071426
SYPLNSYEL	9	Unmodified	_SYPLNSYEL_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7225952148438	2	543.261122	1084.50769	0.48487	0.00026341	-1.6569	-0.00090014	-1.1721	-0.00063673	543.2599764469509	63.091	0.43298	63.091	62.956	63.389	0					27	15	2	0	0	0	0.008366	1	15609	15609		83.429	35.083	1	618350			47318	6903	27103	27104	57973	57973					-0.03118259893199138
SYPLNSYEL	9	Unmodified	_SYPLNSYEL_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7225952148438	2	543.261122	1084.50769	0.61329	0.00033318	-1.7809	-0.00096749	-1.1676	-0.00063431	543.2598883492803	62.974	0.45972	63.07	62.905	63.365	0.095722					29	16	2	0	0	0	0.029232	1	15568	15568		84.522	44.565	1	699720			47319	6903	27103	27104	57974	57974					-0.03118259893199138
SYPLNSYEL	9	Unmodified	_SYPLNSYEL_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.7225341796875	2	543.261122	1084.50769	0.58256	0.00031648	-1.8174	-0.00098732	-1.2348	-0.00067084	543.2600461934206	63.111	0.52188	63.103	62.913	63.435	-0.0085526					31	18	2	0	0	0	0.060198	1	15609	15609		71.708	39.402	1	655670			47320	6903	27103	27104	57975	57975					-0.03118259893199138
SYPLWVMPA	9	Unmodified	_SYPLWVMPA_					0	0	0			REV__ENSG00000030066|ENST00000378460|NUP160	REV__ENSG00000030066|ENST00000378460|NUP160	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8063354492188	2	532.267696	1062.52084	0.18536	9.866E-05	-1.7072	-0.00090867	-1.5218	-0.00081001	532.2666878405629	14.369	0.28231	14.369	14.249	14.531	0					11	9	2	0	0	0	0.25988	1	730	730		3.9444	1.6417	1	34272	+		47321	13491	27104	27105	57976	57976					-0.00792100314788513
SYPNVFLVF	9	Unmodified	_SYPNVFLVF_					0	0	0		nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2874755859375	2	543.286943	1084.55933	0.33512	0.00018206	0.72613	0.00039449	1.0612	0.00057656	543.2874876768332	93.942	0.96445	93.942	93.488	94.452	0					203	80	4	0	0	0	0.016723	2	25065	25065;25104		69.105	43.706	1	871080			47322	466	27105	27106	57977;57978	57977					0.020435285913663392
SYPNVFLVF	9	Unmodified	_SYPNVFLVF_					0	0	0		nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2877197265625	2	543.286943	1084.55933	0.50048	0.00027191	0.54851	0.000298	1.049	0.00056991	543.2873620918228	93.817	1.0563	93.903	93.364	94.42	0.086678					221	84	4	0	0	0	0.004681	4	25009	25009;25051;25091;25100		88.954	56.648	1	1243100			47323	466	27105	27106	57979;57980;57981;57982	57979					0.020435285913663392
SYPNVFLVF	9	Unmodified	_SYPNVFLVF_					0	0	0		nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	nc|ENSG00000013503|Q9NW08-2|POLR3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2874145507812	2	543.286943	1084.55933	0.69843	0.00037945	0.52506	0.00028526	1.2235	0.00066471	543.287192325411	93.887	1.3312	93.887	93.372	94.703	-0.00051117					309	105	5	0	0	0	0.0033114	4	25046	25046;25087;25129;25136		99.799	67.493	1	1352400			47324	466	27105	27106	57983;57984;57985;57986	57983					0.020435285913663392
SYPPLSMLFP	10	Unmodified	_SYPPLSMLFP_					0	0	0		ENST00000491442.5_1_1:42313786-42313885:-|nuORF	ENST00000491442.5_1_1:42313786-42313885:-|nuORF	ENST00000491442.5_1_1:42313786-42313885:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2918090820312	2	576.293911	1150.57327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.721	1	90.721	90.221	91.221	0.0003891								0	0	0	0.36126	1	24047	24047		10.074	2.1638	1				47325	11180	27106	27107	57987	57987					0.004004380281457998
SYPRRFSTL	9	Unmodified	_SYPRRFSTL_					0	0	0		ENST00000403825.7_1_7:112090541-112090697:+|nuORF	ENST00000403825.7_1_7:112090541-112090697:+|nuORF	ENST00000403825.7_1_7:112090541-112090697:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8031616210938	2	563.803823	1125.59309	0.43201	0.00024357	0.52246	0.00029456	0.95447	0.00053813	563.8041593037433	33.697	1.5023	33.697	33.365	34.868	0					184	53	5	0	0	0	0.001957	3	6525	6525;6572;6621		110.55	64.532	1	5421500			47326	10209	27107	27108	57988;57989;57990	57988					0.03531950083151969
SYPRRFSTL	9	Unmodified	_SYPRRFSTL_					0	0	0		ENST00000403825.7_1_7:112090541-112090697:+|nuORF	ENST00000403825.7_1_7:112090541-112090697:+|nuORF	ENST00000403825.7_1_7:112090541-112090697:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8037719726562	2	563.803823	1125.59309	0.60768	0.00034261	0.39648	0.00022354	1.0042	0.00056615	563.8040870048274	33.483	1.8747	33.55	33.239	35.114	0.06636					204	67	5	0	0	0	0.0032746	3	6502	6456;6502;6545		100.09	58.251	1	5506000			47327	10209	27107	27108	57991;57992;57993	57992					0.03531950083151969
SYPRRFSTL	9	Unmodified	_SYPRRFSTL_					0	0	0		ENST00000403825.7_1_7:112090541-112090697:+|nuORF	ENST00000403825.7_1_7:112090541-112090697:+|nuORF	ENST00000403825.7_1_7:112090541-112090697:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.8033447265625	2	563.803823	1125.59309	0.077201	4.3526E-05	0.82631	0.00046588	0.90351	0.0005094	563.8043139498016	33.524	1.7772	33.59	33.245	35.022	0.066704					203	63	5	0	0	0	0.0032746	3	6462	6462;6508;6560		100.09	54.07	1	5512200			47328	10209	27107	27108	57994;57995;57996	57994					0.03531950083151969
SYPRRFVGL	9	Unmodified	_SYPRRFVGL_					0	0	0		nc|ENSG00000153086|Q8TDX5-2|ACMSD;ENSG00000153086|ENST00000356140|ACMSD	nc|ENSG00000153086|Q8TDX5-2|ACMSD	nc|ENSG00000153086|Q8TDX5-2|ACMSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7933959960938	2	547.808908	1093.60326	0.58276	0.00031924	-0.24622	-0.00013488	0.33654	0.00018436	547.8088070529504	39.733	0.8979	39.826	39.522	40.42	0.09267					60	31	3	0	0	0	0.25314	2	8368	8368;8417		15.847	1.0089	1	1567600			47329	5059	27108	27109	57997;57998	57997					0.06020557808369631
SYPRRFVGL	9	Unmodified	_SYPRRFVGL_					0	0	0		nc|ENSG00000153086|Q8TDX5-2|ACMSD;ENSG00000153086|ENST00000356140|ACMSD	nc|ENSG00000153086|Q8TDX5-2|ACMSD	nc|ENSG00000153086|Q8TDX5-2|ACMSD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7452392578125	2	547.808908	1093.60326	0.50677	0.00027761	-0.111	-6.0805E-05	0.39577	0.00021681	547.8088760291421	39.683	1.0241	39.783	39.481	40.505	0.099407					80	36	4	0	0	0	0.25417	1	8496	8496		4.756	4.756	1	1751600			47330	5059	27108	27109	57999	57999					0.06020557808369631
SYPSAFSKL	9	Unmodified	_SYPSAFSKL_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2615661621094	2	500.260925	998.507297	0.61792	0.00030912	1.1681	0.00058436	1.786	0.00089349	500.2611964502642	47.997	0.92409	47.997	47.658	48.582	0					72	32	3	0	0	0	0.10763	1	10987	10987		55.235	28.351	1	2513300			47331	6111	27109	27110	58000	58000					0.007983651776157785
SYPSAFSKL	9	Unmodified	_SYPSAFSKL_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2616882324219	2	500.260925	998.507297	0.75211	0.00037625	1.1089	0.00055473	1.861	0.00093098	500.26122685811214	47.975	1.063	48.023	47.51	48.573	0.047523					85	39	3	0	0	0	0.073988	1	10971	10971		43.982	9.8794	1	3127500			47332	6111	27109	27110	58001	58001					0.007983651776157785
SYPSAFSKL	9	Unmodified	_SYPSAFSKL_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2615051269531	2	500.260925	998.507297	0.56558	0.00028294	1.1952	0.00059792	1.7608	0.00088086	500.26128858550123	47.911	0.97325	47.955	47.587	48.56	0.04332					94	36	4	0	0	0	0.10763	1	10951	10951		47.732	13.63	1	2766900			47333	6111	27109	27110	58002	58002					0.007983651776157785
SYPTTTISY	9	Unmodified	_SYPTTTISY_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.3016357421875	2	516.747847	1031.48114	0.39455	0.00020388	0.012907	6.6694E-06	0.40746	0.00021055	516.7477143294913	51.23	0.54253	51.24	50.937	51.48	0.0095673					37	20	3	0	0	0	0.082808	1	11984	11984		58.679	15.711	1	362350			47334	6527	27110	27111	58003	58003					-0.033339487845069016
SYPTTTISY	9	Unmodified	_SYPTTTISY_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	516.747847	1031.48114	0.56685	0.00029292	-0.38356	-0.00019821	0.18329	9.4713E-05	516.7476437490386	51.19	0.48382	51.19	50.922	51.406	0	0.00074692	-0.0002902	NaN	58.679	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251820			47335	6527	27110	27111							-0.033339487845069016
SYPTTTISY	9	Unmodified	_SYPTTTISY_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	516.747847	1031.48114	0.38295	0.00019789	-0.026022	-1.3447E-05	0.35693	0.00018444	516.7478758829399	51.092	0.44567	51.139	50.929	51.375	0.046574	-0.050932	7.9315E-05	NaN	58.679	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244430			47336	6527	27110	27111							-0.033339487845069016
SYPVMEKSL	9	Unmodified	_SYPVMEKSL_					0	0	0		ENST00000480273.5_1_20:62319266-62327135:+|nuORF;nc|ENSG00000258366|Q9NZ71-9|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-2|RTEL1	ENST00000480273.5_1_20:62319266-62327135:+|nuORF	ENST00000480273.5_1_20:62319266-62327135:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3031616210938	2	527.267893	1052.52123	0.46923	0.00024741	-3.0714	-0.0016194	-2.6022	-0.001372	527.2661929423979	67.029	0.62086	67.029	66.717	67.338	0					24	21	2	0	0	0	0.15943	1	16815	16815		39.95	14.55	1	130310			47337	8639	27111	27112	58004	58004					-0.002927253855887102
SYPVPLLSL	9	Unmodified	_SYPVPLLSL_					0	0	0			REV__nc|ENSG00000174842|Q92990-2|GLMN	REV__nc|ENSG00000174842|Q92990-2|GLMN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7890625	2	494.789318	987.564084	0.3298	0.00016318	-0.35031	-0.00017333	-0.020509	-1.0148E-05	494.78909719129814	82.122	0.71608	82.191	81.931	82.647	0.068993					61	29	3	0	0	0	0.17787	1	21474	21474		26.884	0	1	452370	+		47338	17856	27112	27113	58005	58005					0.06980412734139918
SYPYFVIQY	9	Unmodified	_SYPYFVIQY_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.2898559570312	2	590.289682	1178.56481	0.38079	0.00022477	0.13078	7.7198E-05	0.51156	0.00030197	590.2897316888583	79.946	0.65234	79.946	79.714	80.367	0					65	23	4	0	0	0	0.004681	2	20768	20768;20826		88.954	56.168	1	757760			47339	5717	27113	27114	58006;58007	58006					-0.017327926168036356
SYPYFVIQY	9	Unmodified	_SYPYFVIQY_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.2899169921875	2	590.289682	1178.56481	0.37191	0.00021954	0.018181	1.0732E-05	0.39009	0.00023027	590.2897003088428	79.849	0.77231	79.911	79.618	80.391	0.061417					75	28	4	0	0	0	0.004681	2	20732	20732;20781		88.954	56.168	1	909650			47340	5717	27113	27114	58008;58009	58008					-0.017327926168036356
SYPYFVIQY	9	Unmodified	_SYPYFVIQY_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.289794921875	2	590.289682	1178.56481	0.39007	0.00023025	0.0031891	1.8825E-06	0.39326	0.00023213	590.2896570751184	79.994	0.71008	79.965	79.727	80.437	-0.028923					73	24	4	0	0	0	0.0033114	2	20766	20766;20815		99.799	67.013	1	955320			47341	5717	27113	27114	58010;58011	58010					-0.017327926168036356
SYQAVMPHF	9	Oxidation (M)	_SYQAVM(Oxidation (M))PHF_		SYQAVM(1)PHF		SYQAVM(61)PHF	0	0	1		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.28271484375	2	548.250034	1094.48552	0.38057	0.00020865	0.3528	0.00019342	0.73337	0.00040207	548.2501382751603	43.801	0.78293	43.801	43.307	44.09	0					53	28	2	0	0	0	0.047851	1	9577	9577		61.357	39.611	1	427490			47342	7681	27114	27115	58012	58012		847			-0.0579476284260636
SYQAVMPHF	9	Oxidation (M)	_SYQAVM(Oxidation (M))PHF_		SYQAVM(1)PHF		SYQAVM(71)PHF	0	0	1		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2509765625	2	548.250034	1094.48552	0.61304	0.0003361	0.049067	2.6901E-05	0.6621	0.000363	548.2501445982874	43.448	0.74119	43.525	43.1	43.841	0.077518					44	26	3	0	0	0	0.015402	1	9524	9524		71.134	42.647	1	401650			47343	7681	27114	27115	58013	58013		847			-0.0579476284260636
SYQAVMPHF	9	Oxidation (M)	_SYQAVM(Oxidation (M))PHF_		SYQAVM(1)PHF		SYQAVM(71)PHF	0	0	1		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.25048828125	2	548.250034	1094.48552	0.53402	0.00029278	0.36122	0.00019804	0.89525	0.00049082	548.2502080805982	43.57	0.89326	43.654	42.948	43.841	0.083996					68	32	3	0	0	0	0.015402	1	9507	9507		71.134	48.397	1	480590			47344	7681	27114	27115	58014	58014		847			-0.0579476284260636
SYQDFFEAI	9	Unmodified	_SYQDFFEAI_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2533569335938	2	560.253297	1118.49204	0.38781	0.00021727	0.30505	0.0001709	0.69286	0.00038818	560.2532996615049	82.354	0.62655	82.354	82.081	82.708	0					70	22	4	0	0	0	0.0032746	1	21491	21491		100.09	69.454	1	1346800			47345	2821	27115	27116	58015	58015					-0.06246546410238807
SYQDFFEAI	9	Unmodified	_SYQDFFEAI_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.2532958984375	2	560.253297	1118.49204	0.31838	0.00017837	0.29652	0.00016613	0.6149	0.0003445	560.2532683125037	82.284	0.71024	82.353	82.086	82.796	0.068993					84	28	4	0	0	0	0.0023895	2	21456	21456;21501		107.1	69.126	1	1359900			47346	2821	27115	27116	58016;58017	58016					-0.06246546410238807
SYQDFFEAI	9	Unmodified	_SYQDFFEAI_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.25341796875	2	560.253297	1118.49204	0.35217	0.0001973	0.23233	0.00013016	0.58449	0.00032746	560.2532661785795	82.357	0.966	82.337	82.061	83.027	-0.020584					88	37	4	0	0	0	0.0048951	1	21470	21470		87.258	63.238	1	1600400			47347	2821	27115	27116	58018	58018					-0.06246546410238807
SYQKDQFRAEE	11	Unmodified	_SYQKDQFRAEE_					0	0	0			REV__ENSG00000089199|ENST00000378961|CHGB	REV__ENSG00000089199|ENST00000378961|CHGB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7815856933594	3	467.552879	1399.63681	0.12911	6.0365E-05	0.29219	0.00013661	0.4213	0.00019698	467.5531139772712	35.692	0.46981	35.692	35.492	35.962	0					24	16	2	0	0	0	0.33085	1	7150	7150		8.2864	0.85736	1	227180	+		47348	14027	27116	27117	58019	58019					-0.04702530001031846
SYQKDQFRAEE	11	Unmodified	_SYQKDQFRAEE_					0	0	0			REV__ENSG00000089199|ENST00000378961|CHGB	REV__ENSG00000089199|ENST00000378961|CHGB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	467.552879	1399.63681	0.12508	5.8483E-05	-0.026416	-1.2351E-05	0.098667	4.6132E-05	467.55296502902604	35.538	0.43942	35.621	35.488	35.928	0.082359	-0.02216	-0.00020836	NaN	8.2864	24	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261580	+		47349	14027	27116	27117							-0.04702530001031846
SYQKVIELF	9	Unmodified	_SYQKVIELF_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8108520507812	2	563.810782	1125.60701	0.29086	0.00016399	0.00029932	1.6876E-07	0.29116	0.00016416	563.8106818863487	63.023	1.3372	63.023	62.689	64.026	0					130	48	4	0	0	0	5.4053E-05	2	15577	15535;15577		148.27	83.033	1	5071700			47350	6245	27117	27118	58020;58021	58021					0.04923182791549152
SYQKVIELF	9	Unmodified	_SYQKVIELF_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8107299804688	2	563.810782	1125.60701	0.43764	0.00024675	-0.24527	-0.00013829	0.19237	0.00010846	563.8105647018428	62.874	1.4073	62.97	62.712	64.119	0.095722					137	50	5	0	0	0	3.4202E-05	2	15543	15497;15543		151.48	86.245	1	5647200			47351	6245	27117	27118	58022;58023	58023					0.04923182791549152
SYQKVIELF	9	Unmodified	_SYQKVIELF_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.810791015625	2	563.810782	1125.60701	0.2523	0.00014225	-0.023421	-1.3205E-05	0.22888	0.00012905	563.8106950099816	63.034	1.4542	63.025	62.675	64.129	-0.0085526					141	52	4	0	0	0	3.4202E-05	3	15582	15529;15582;15646		151.48	86.245	1	5557900			47352	6245	27117	27118	58024;58025;58026	58025					0.04923182791549152
SYQPTGQCSL	10	Unmodified	_SYQPTGQCSL_					0	0	0			REV__ENST00000353047.10_1_8:11700838-11700958:-|nuORF	REV__ENST00000353047.10_1_8:11700838-11700958:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2435302734375	2	542.242406	1082.47026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.017	1	84.017	83.517	84.517	0								0	0	0	0.32869	1	22005	22005		23.79	4.5328	1		+		47353	20169	27118	27119	58027	58027					-0.06767674430443549
SYQQAGIPVD	10	Unmodified	_SYQQAGIPVD_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8634643554688	2	539.264196	1076.51384	0.8001	0.00043147	2.8562	0.0015402	3.6563	0.0019717	539.2656202161547	74.545	0.4175	74.545	74.313	74.731	0					21	14	2	0	0	0	0.28569	1	19042	19042		26.268	4.5215	1	309510			47354	3715	27119	27120	58028	58028					-0.021357416616410774
SYQQAGIPVD	10	Unmodified	_SYQQAGIPVD_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8633422851562	2	539.264196	1076.51384	0.4122	0.00022229	2.8553	0.0015397	3.2675	0.001762	539.2656728645222	74.436	0.37832	74.489	74.353	74.732	0.052361					17	12	2	0	0	0	0.28569	1	19031	19031		26.268	10.421	1	281520			47355	3715	27119	27120	58029	58029					-0.021357416616410774
SYQQLGTTL	9	Unmodified	_SYQQLGTTL_					0	0	0		ENST00000374151.7_1_10:50363513-50363810:-|nuORF	ENST00000374151.7_1_10:50363513-50363810:-|nuORF	ENST00000374151.7_1_10:50363513-50363810:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7648010253906	2	505.761289	1009.50803	0.33877	0.00017134	4.0877	0.0020674	4.4265	0.0022388	505.7647775963944	68.334	0.9701	68.334	67.842	68.812	0					85	35	4	0	0	0	0.26612	1	17224	17224		13.906	1.6654	1	599110			47356	9888	27120	27121	58030	58030					0.0036515982668561264
SYQQPLSI	8	Unmodified	_SYQQPLSI_					0	0	0		ENSG00000183307|ENST00000331437|TMEM121B;nc|ENSG00000183307|Q9BXQ6-2|TMEM121B	ENSG00000183307|ENST00000331437|TMEM121B	ENSG00000183307|ENST00000331437|TMEM121B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.75531005859375	2	468.245275	934.475997	0.25728	0.00012047	-0.45267	-0.00021196	-0.19538	-9.1488E-05	468.24499920880936	65.754	0.46828	65.754	65.458	65.927	0					25	16	2	0	0	0	0.3671	1	16387	16387		23.148	2.6948	1	132100			47357	7357	27121	27122	58031	58031					0.006137921435311
SYQQQIEI	8	Unmodified	_SYQQQIEI_					0	0	0			REV__nc|ENSG00000115306|Q01082-2|SPTBN1	REV__nc|ENSG00000115306|Q01082-2|SPTBN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7615661621094	2	504.753464	1007.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.669	1	56.669	56.169	57.169	0								0	0	0	0.3229	1	13623	13623		25.399	3.6527	1		+		47358	14873	27122	27123	58032	58032					-0.011071266903741162
SYQRAFNEF	9	Unmodified	_SYQRAFNEF_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.27001953125	2	581.269813	1160.52507	0.38241	0.00022229	0.16391	9.5276E-05	0.54632	0.00031756	581.2697396518774	44.855	0.82987	44.924	44.627	45.456	0.068573					74	29	4	0	0	0	1.3973E-05	1	9950	9950		154.75	114.8	1	2079100			47359	7514	27123	27124	58033	58033					-0.04876919567527693
SYQRAFNEF	9	Unmodified	_SYQRAFNEF_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.2701416015625	2	581.269813	1160.52507	0.4804	0.00027924	0.14058	8.1717E-05	0.62098	0.00036096	581.2697421285606	44.796	0.77927	44.871	44.615	45.394	0.07505					85	28	4	0	0	0	3.4262E-07	1	9942	9942		166.77	133.98	1	1769900			47360	7514	27123	27124	58034	58034					-0.04876919567527693
SYQRAFNEF	9	Unmodified	_SYQRAFNEF_					0	0	0		ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	ENSG00000185215|ENST00000560869|TNFAIP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	581.269813	1160.52507	0.40877	0.00023761	0.15585	9.0592E-05	0.56463	0.0003282	581.2697459855794	45.269	0.95585	45.269	44.961	45.917	0	0.24774	2.8176E-06	NaN	166.77	82	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1570300			47361	7514	27123	27124							-0.04876919567527693
SYQSQINHI	9	Unmodified	_SYQSQINHI_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2691650390625	2	545.269813	1088.52507	-0.97976	-0.00053423	-0.010602	-5.7812E-06	-0.99036	-0.00054001	545.269709818906	34.884	0.65606	34.884	34.646	35.302	0					52	23	3	0	0	0	5.4053E-05	1	6917	6917		148.27	102.57	1	451480			47362	2136	27124	27125	58035	58035					-0.015649195675223382
SYQSQINHI	9	Unmodified	_SYQSQINHI_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.26904296875	2	545.269813	1088.52507	-0.98546	-0.00053734	0.0041725	2.2751E-06	-0.98129	-0.00053507	545.2697159315784	34.795	0.66122	34.87	34.657	35.318	0.075306					48	23	3	0	0	0	0.00078897	1	6902	6902		125.04	79.338	1	442340			47363	2136	27124	27125	58036	58036					-0.015649195675223382
SYQSQINHI	9	Unmodified	_SYQSQINHI_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2691040039062	2	545.269813	1088.52507	-0.27626	-0.00015064	-0.7058	-0.00038485	-0.98206	-0.00053549	545.2693663593134	34.8	0.74678	34.877	34.561	35.308	0.077377					49	26	3	0	0	0	0.0028032	1	6867	6867		103.82	72.555	1	379560			47364	2136	27124	27125	58037	58037					-0.015649195675223382
SYRCPCRFF	9	Unmodified	_SYRCPCRFF_					0	0	0		ENSG00000107562|ENST00000343575|CXCL12;nc|ENSG00000107562|P48061-5|CXCL12;nc|ENSG00000107562|P48061|CXCL12;nc|ENSG00000107562|P48061-6|CXCL12;ENST00000496375.1_1_10:44874083-44881535:-|nuORF;nc|ENSG00000107562|P48061-3|CXCL12;nc|ENSG00000107562|P48061-4|CXCL12;ENST00000488591.1_1_10:44876209-44880453:-|nuORF;nc|ENSG00000107562|P48061-7|CXCL12	ENSG00000107562|ENST00000343575|CXCL12	ENSG00000107562|ENST00000343575|CXCL12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.7650146484375	2	589.765329	1177.5161	0.47006	0.00027723	-0.5203	-0.00030686	-0.050243	-2.9631E-05	589.7648105111488	79.293	1.5726	79.293	78.749	80.322	0					97	61	2	0	0	0	0.17787	2	20526	20526;20580		26.884	4.1474	1	188600			47365	2133	27125	27126	58038;58039	58038					-0.0655530772921793
SYRCPCRFF	9	Unmodified	_SYRCPCRFF_					0	0	0		ENSG00000107562|ENST00000343575|CXCL12;nc|ENSG00000107562|P48061-5|CXCL12;nc|ENSG00000107562|P48061|CXCL12;nc|ENSG00000107562|P48061-6|CXCL12;ENST00000496375.1_1_10:44874083-44881535:-|nuORF;nc|ENSG00000107562|P48061-3|CXCL12;nc|ENSG00000107562|P48061-4|CXCL12;ENST00000488591.1_1_10:44876209-44880453:-|nuORF;nc|ENSG00000107562|P48061-7|CXCL12	ENSG00000107562|ENST00000343575|CXCL12	ENSG00000107562|ENST00000343575|CXCL12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.2565307617188	2	589.765329	1177.5161	0.72847	0.00042963	-0.6664	-0.00039302	0.062074	3.6609E-05	589.7644014648788	78.57	0.96048	78.57	78.12	79.08	0					57	37	2	0	0	0	0.17611	1	20253	20253		34.102	7.2188	1	157130			47366	2133	27125	27126	58040	58040					-0.0655530772921793
SYRCPCRFF	9	Unmodified	_SYRCPCRFF_					0	0	0		ENSG00000107562|ENST00000343575|CXCL12;nc|ENSG00000107562|P48061-5|CXCL12;nc|ENSG00000107562|P48061|CXCL12;nc|ENSG00000107562|P48061-6|CXCL12;ENST00000496375.1_1_10:44874083-44881535:-|nuORF;nc|ENSG00000107562|P48061-3|CXCL12;nc|ENSG00000107562|P48061-4|CXCL12;ENST00000488591.1_1_10:44876209-44880453:-|nuORF;nc|ENSG00000107562|P48061-7|CXCL12	ENSG00000107562|ENST00000343575|CXCL12	ENSG00000107562|ENST00000343575|CXCL12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8463745117188	2	589.765329	1177.5161	-0.016747	-9.8769E-06	-0.042433	-2.5025E-05	-0.05918	-3.4902E-05	589.7640257445245	113.28	0.045242	113.28	113.25	113.3	0					6	5	2	0	0	0	0.26188	1	29419	29419		1.6526	0	1	15656			47367	2133	27125	27126	58041	58041					-0.0655530772921793
SYRCPCRFF	9	Unmodified	_SYRCPCRFF_					0	0	0		ENSG00000107562|ENST00000343575|CXCL12;nc|ENSG00000107562|P48061-5|CXCL12;nc|ENSG00000107562|P48061|CXCL12;nc|ENSG00000107562|P48061-6|CXCL12;ENST00000496375.1_1_10:44874083-44881535:-|nuORF;nc|ENSG00000107562|P48061-3|CXCL12;nc|ENSG00000107562|P48061-4|CXCL12;ENST00000488591.1_1_10:44876209-44880453:-|nuORF;nc|ENSG00000107562|P48061-7|CXCL12	ENSG00000107562|ENST00000343575|CXCL12	ENSG00000107562|ENST00000343575|CXCL12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.7644653320312	2	589.765329	1177.5161	0.36043	0.00021257	-2.6351	-0.0015541	-2.2747	-0.0013415	589.7650341629503	74.704	4.5976	74.756	74.379	78.977	0.052361					405	167	7	0	0	0	0.12846	1	19533	19533		34.102	1.797	1	102200000			47368	2133	27125	27126	58042	58042					-0.0655530772921793
SYRCPCRFF	9	Unmodified	_SYRCPCRFF_					0	0	0		ENSG00000107562|ENST00000343575|CXCL12;nc|ENSG00000107562|P48061-5|CXCL12;nc|ENSG00000107562|P48061|CXCL12;nc|ENSG00000107562|P48061-6|CXCL12;ENST00000496375.1_1_10:44874083-44881535:-|nuORF;nc|ENSG00000107562|P48061-3|CXCL12;nc|ENSG00000107562|P48061-4|CXCL12;ENST00000488591.1_1_10:44876209-44880453:-|nuORF;nc|ENSG00000107562|P48061-7|CXCL12	ENSG00000107562|ENST00000343575|CXCL12	ENSG00000107562|ENST00000343575|CXCL12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.76513671875	2	589.765329	1177.5161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.257	1	79.319	78.819	79.819	0.061417								0	0	0	0.20639	1	20533	20533		20.454	1.1966	1				47369	2133	27125	27126	58043	58043					-0.0655530772921793
SYRDCNLF	8	Unmodified	_SYRDCNLF_					0	0	0			REV__ENSG00000132915|ENST00000255266|PDE6A	REV__ENSG00000132915|ENST00000255266|PDE6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3391418457031	2	509.226559	1016.43857	0.28133	0.00014326	1.7816	0.00090722	2.0629	0.0010505	509.2270509141882	67.179	0.68626	67.179	66.937	67.623	0					65	23	4	0	0	0	0.34185	1	16935	16935		10.183	0.83596	1	765010	+		47370	15595	27126	27127	58044	58044					-0.06899622393757454
SYRDCNLF	8	Unmodified	_SYRDCNLF_					0	0	0			REV__ENSG00000132915|ENST00000255266|PDE6A	REV__ENSG00000132915|ENST00000255266|PDE6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.339111328125	2	509.226559	1016.43857	0.21883	0.00011143	1.7701	0.00090136	1.9889	0.0010128	509.22708384960674	67.088	0.64757	67.166	66.899	67.546	0.078041					64	22	4	0	0	0	0.34185	1	16890	16890		10.183	1.5901	1	951120	+		47371	15595	27126	27127	58045	58045					-0.06899622393757454
SYRDSNRRSHR	11	Unmodified	_SYRDSNRRSHR_					0	0	0		nc|ENSG00000176406|Q9UQ26-4|RIMS2;nc|ENSG00000176406|Q9UQ26-5|RIMS2;nc|ENSG00000176406|Q9UQ26-2|RIMS2;nc|ENSG00000176406|Q9UQ26-3|RIMS2;nc|ENSG00000176406|Q9UQ26-1|RIMS2;nc|ENSG00000176406|Q9UQ26-8|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2;ENSG00000176406|ENST00000696799|RIMS2	nc|ENSG00000176406|Q9UQ26-4|RIMS2	nc|ENSG00000176406|Q9UQ26-4|RIMS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7616882324219	3	478.575011	1432.7032	0.099971	4.7844E-05	-2.4316	-0.0011637	-2.3316	-0.0011159	478.9082160472267	33.633	0.30069	33.699	33.607	33.907	0.066704					14	10	2	0	0	0	0.33122	1	6522	6522		7.0371	4.4058	1	114920			47372	6927	27127	27128	58046	58046					0.00416143404208924
SYRDSYDSY	9	Unmodified	_SYRDSYDSY_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;nc|ENSG00000099622|Q14011-3|CIRBP;ENST00000591097.5_1_19:1271671-1272439:+|nuORF;ENST00000591055.5_1_19:1271297-1272439:+|nuORF;ENST00000593128.5_1_19:1271297-1272439:+|nuORF	nc|ENSG00000099622|Q14011-2|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.2333984375	2	578.233093	1154.45163	0.31427	0.00018172	-0.54442	-0.0003148	-0.23015	-0.00013308	578.2327717152325	31.919	0.56033	31.919	31.719	32.279	0					36	19	3	0	0	0	0.0076724	1	6035	6035		96.936	56.986	1	560320			47373	1491	27128	27129	58047	58047					-0.11941512800649434
SYRDSYDSY	9	Unmodified	_SYRDSYDSY_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;nc|ENSG00000099622|Q14011-3|CIRBP;ENST00000591097.5_1_19:1271671-1272439:+|nuORF;ENST00000591055.5_1_19:1271297-1272439:+|nuORF;ENST00000593128.5_1_19:1271297-1272439:+|nuORF	nc|ENSG00000099622|Q14011-2|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2330322265625	2	578.233093	1154.45163	0.50147	0.00028996	-0.62259	-0.00036	-0.12113	-7.0039E-05	578.2326889883592	31.957	0.53552	31.999	31.795	32.331	0.042366					31	18	2	0	0	0	0.032589	1	6061	6061		59.368	26.583	1	673250			47374	1491	27128	27129	58048	58048					-0.11941512800649434
SYRDSYDSY	9	Unmodified	_SYRDSYDSY_					0	0	0		nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP;nc|ENSG00000099622|Q14011|CIRBP;ENST00000590347.5_1_19:1271297-1272439:+|nuORF;ENST00000590704.5_1_19:1271297-1272439:+|nuORF;nc|ENSG00000099622|Q14011-3|CIRBP;ENST00000591097.5_1_19:1271671-1272439:+|nuORF;ENST00000591055.5_1_19:1271297-1272439:+|nuORF;ENST00000593128.5_1_19:1271297-1272439:+|nuORF	nc|ENSG00000099622|Q14011-2|CIRBP	nc|ENSG00000099622|Q14011-2|CIRBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3242797851562	2	578.233093	1154.45163	0.29795	0.00017229	-0.29954	-0.0001732	-0.0015852	-9.1663E-07	578.2326795855905	31.83	0.5867	31.871	31.647	32.234	0.040991					29	20	2	0	0	0	0.089483	1	5991	5991		59.368	31.74	1	514880			47375	1491	27128	27129	58049	58049					-0.11941512800649434
SYRDSYESY	9	Unmodified	_SYRDSYESY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENSG00000213516|ENST00000652648|RBMXL1	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.2410278320312	2	585.240918	1168.46728	0.55777	0.00032643	0.2309	0.00013513	0.78867	0.00046156	585.2409717430636	32.259	1.0289	32.259	31.982	33.011	0					79	36	4	0	0	0	0.0028032	2	6107	6107;6160		103.82	69.422	1	1124300			47376	4760	27129	27130	58050;58051	58050					-0.11021226283605756
SYRDSYESY	9	Unmodified	_SYRDSYESY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENSG00000213516|ENST00000652648|RBMXL1	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.2415161132812	2	585.240918	1168.46728	0.58532	0.00034255	0.12052	7.053E-05	0.70583	0.00041308	585.2410144510025	32.19	0.7231	32.233	31.968	32.691	0.042366					68	25	4	0	0	0	0.0048951	2	6085	6085;6136		87.258	52.856	1	1492100			47377	4760	27129	27130	58052;58053	58052					-0.11021226283605756
SYRDSYESY	9	Unmodified	_SYRDSYESY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000147274|ENST00000320676|RBMX;ENSG00000213516|ENST00000652648|RBMXL1	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.2411499023438	2	585.240918	1168.46728	0.38112	0.00022305	0.17909	0.00010481	0.56021	0.00032786	585.2410648779208	32.115	0.7804	32.156	31.916	32.696	0.040989					72	27	4	0	0	0	0.0028032	2	6064	6064;6117		103.82	71.038	1	1271900			47378	4760	27129	27130	58054;58055	58054					-0.11021226283605756
SYREDPIVY	9	Unmodified	_SYREDPIVY_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2799682617188	2	571.279846	1140.54514	0.19688	0.00011247	0.28405	0.00016227	0.48093	0.00027475	571.279886778407	42.859	0.81933	42.859	42.543	43.362	0					87	29	5	0	0	0	0.079752	2	9402	9352;9402		41.84	20.693	1	2506700			47379	2042	27130	27131	58056;58057	58057					-0.019511686275791362
SYREDPIVY	9	Unmodified	_SYREDPIVY_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.280029296875	2	571.279846	1140.54514	0.21534	0.00012302	0.099045	5.6582E-05	0.31439	0.0001796	571.2797679849298	42.591	0.78439	42.676	42.378	43.163	0.085197					82	28	4	0	0	0	0.10059	2	9296	9248;9296		38.176	13.391	1	2556700			47380	2042	27130	27131	58058;58059	58059					-0.019511686275791362
SYREDPIVY	9	Unmodified	_SYREDPIVY_					0	0	0		ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-2|MET;nc|ENSG00000105976|P08581-3|MET	ENSG00000105976|ENST00000397752|MET	ENSG00000105976|ENST00000397752|MET	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2802734375	2	571.279846	1140.54514	0.1601	9.146E-05	0.30618	0.00017492	0.46628	0.00026638	571.279966774767	42.461	0.72522	42.552	42.26	42.985	0.091362					79	25	4	0	0	0	0.058995	2	9227	9227;9276		49.554	24.563	1	2545200			47381	2042	27130	27131	58060;58061	58060					-0.019511686275791362
SYRIIYNLF	9	Unmodified	_SYRIIYNLF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8245239257812	2	594.824224	1187.63389	0.53596	0.0003188	0.16225	9.6513E-05	0.69821	0.00041531	594.824291752305	72.119	1.2537	72.119	71.799	73.053	0					110	45	4	0	0	0	0.001957	2	18396	18348;18396		110.55	21.152	1	1704600			47382	5717	27131	27132	58062;58063	58063					0.04758291402731629
SYRIIYNLF	9	Unmodified	_SYRIIYNLF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.824462890625	2	594.824224	1187.63389	0.61497	0.0003658	0.084636	5.0343E-05	0.69961	0.00041614	594.8242090625637	72.09	1.2788	72.146	71.842	73.12	0.05658					122	46	4	0	0	0	0.0032746	2	18326	18326;18374		100.09	16.662	1	1830700			47383	5717	27131	27132	58064;58065	58064					0.04758291402731629
SYRIIYNLF	9	Unmodified	_SYRIIYNLF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8245239257812	2	594.824224	1187.63389	0.50317	0.0002993	0.25506	0.00015171	0.75823	0.00045101	594.824299207646	72.227	0.8948	72.2	71.901	72.795	-0.027275					94	31	4	0	0	0	0.0032746	3	18354	18354;18403;18438		100.09	16.662	1	2021800			47384	5717	27131	27132	58066;58067;58068	58066					0.04758291402731629
SYRKRPRWR	9	Unmodified	_SYRKRPRWR_					0	0	0			REV__ENST00000480451.1_1_22:17639677-17639998:-|nuORF	REV__ENST00000480451.1_1_22:17639677-17639998:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.269287109375	3	435.586412	1303.73741	-0.12393	-5.3984E-05	2.7311	0.0011896	2.6072	0.0011357	435.58839274653064	16.844	0.17292	16.844	16.779	16.952	0					6	5	2	0	0	0	0.25949	1	1445	1445		4.897	0	1	21253	+		47385	21475	27132	27133	58069	58069					0.09768636353783222
SYRLRKDFV	9	Unmodified	_SYRLRKDFV_					0	0	0			REV__ENSG00000166446|ENST00000570137|CDYL2	REV__ENSG00000166446|ENST00000570137|CDYL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.2800903320312	2	592.332747	1182.65094	0.66459	0.00039366	-1.8298	-0.0010839	-1.1653	-0.00069022	592.3315248840651	53.874	0.30143	53.874	53.698	53.999	0					15	10	2	0	0	0	0.25526	1	12709	12709		7.9102	1.7044	1	212820	+		47386	17323	27133	27134	58070	58070					0.06692212008533716
SYSASQFYL	9	Unmodified	_SYSASQFYL_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2659912109375	2	533.248015	1064.48148	0.062602	3.3382E-05	2.019	0.0010766	2.0816	0.00111	533.2486205625586	65.056	0.26071	65.145	65.034	65.295	0.088882					24	9	3	0	0	0	0.12642	1	16185	16185		34.402	8.0604	1	172620			47387	6236	27134	27135	58071	58071					-0.0481852906466429
SYSASQFYL	9	Unmodified	_SYSASQFYL_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2661743164062	2	533.248015	1064.48148	0.13701	7.3061E-05	1.7018	0.0009075	1.8388	0.00098056	533.2487752925787	65.18	0.40054	65.169	65.022	65.422	-0.01133					22	14	2	0	0	0	0.23767	1	16208	16208		18.146	2.8979	1	139430			47388	6236	27134	27135	58072	58072					-0.0481852906466429
SYSDPPLKF	9	Unmodified	_SYSDPPLKF_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3193359375	2	527.266207	1052.51786	0.50127	0.0002643	-0.026221	-1.3826E-05	0.47505	0.00025048	527.2661754624909	51.192	0.57574	51.239	50.985	51.561	0.046574					52	21	3	0	0	0	0.18123	1	11864	11864		34.402	11.253	1	1098200			47389	6389	27135	27136	58073	58073					-0.006296521679587386
SYSDPPLKF	9	Unmodified	_SYSDPPLKF_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3195190429688	2	527.266207	1052.51786	0.61791	0.0003258	-0.036426	-1.9206E-05	0.58149	0.0003066	527.266184921651	51.269	0.51767	51.278	51.016	51.533	0.0095673					51	19	3	0	0	0	0.15943	1	11879	11879		32.786	9.6373	1	1139800			47390	6389	27135	27136	58074	58074					-0.006296521679587386
SYSDPPLKF	9	Unmodified	_SYSDPPLKF_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	527.266207	1052.51786	0.6902	0.00036392	-0.18866	-9.9472E-05	0.50155	0.00026445	527.2661021059672	51.208	0.55804	51.208	50.978	51.536	0	-0.033536	-0.00011614	NaN	32.786	52	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1159300			47391	6389	27135	27136							-0.006296521679587386
SYSGTFHSL	9	Unmodified	_SYSGTFHSL_					0	0	0		ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1	ENSG00000219481|ENST00000430580|NBPF1	ENSG00000219481|ENST00000430580|NBPF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7320861816406	2	499.732532	997.45051	0.052866	2.6419E-05	0.22952	0.0001147	0.28238	0.00014112	499.73266096381406	39.608	0.78437	39.608	39.348	40.132	0					43	28	2	0	0	0	0.10197	1	8377	8377		37.974	16.227	1	312660			47392	8417	27136	27137	58075	58075					-0.0483168237889231
SYSGTFHSL	9	Unmodified	_SYSGTFHSL_					0	0	0		ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1	ENSG00000219481|ENST00000430580|NBPF1	ENSG00000219481|ENST00000430580|NBPF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	499.732532	997.45051	0.24564	0.00012276	0.060242	3.0105E-05	0.30588	0.00015286	499.73249398083436	39.422	0.49912	39.515	39.278	39.777	0.09267	-0.038522	-8.5642E-07	NaN	37.974	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264030			47393	8417	27136	27137							-0.0483168237889231
SYSGTFHSL	9	Unmodified	_SYSGTFHSL_					0	0	0		ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1	ENSG00000219481|ENST00000430580|NBPF1	ENSG00000219481|ENST00000430580|NBPF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	499.732532	997.45051	0.34448	0.00017215	-0.20042	-0.00010015	0.14406	7.1992E-05	499.7323504765145	39.437	0.52547	39.537	39.262	39.788	0.099407	-0.016616	-0.00026138	NaN	37.974	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256830			47394	8417	27136	27137							-0.0483168237889231
SYSHIMALI	9	Oxidation (M)	_SYSHIM(Oxidation (M))ALI_		SYSHIM(1)ALI		SYSHIM(74)ALI	0	0	1		ENST00000489324.1_1_1:155289446-155290397:+|nuORF;nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS	ENST00000489324.1_1_1:155289446-155290397:+|nuORF	ENST00000489324.1_1_1:155289446-155290397:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.76806640625	2	525.76806	1049.52157	0.8494	0.00044659	-0.40817	-0.0002146	0.44122	0.00023198	525.7677921529992	50.465	1.1205	50.465	50.077	51.198	0					100	40	4	0	0	0	0.013258	1	11720	11720		74.423	45.936	1	3030200			47395	5483	27137	27138	58076	58076		659			-0.0012130566574342083
SYSHIMALI	9	Oxidation (M)	_SYSHIM(Oxidation (M))ALI_		SYSHIM(1)ALI		SYSHIM(85)ALI	0	0	1		ENST00000489324.1_1_1:155289446-155290397:+|nuORF;nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS	ENST00000489324.1_1_1:155289446-155290397:+|nuORF	ENST00000489324.1_1_1:155289446-155290397:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7679443359375	2	525.76806	1049.52157	1.0757	0.00056557	-0.7099	-0.00037324	0.36581	0.00019233	525.7676451455043	50.391	1.0598	50.436	50.108	51.167	0.044891					111	38	4	0	0	0	0.0061338	1	11722	11722		85.357	50.955	1	3167400			47396	5483	27137	27138	58077	58077		659			-0.0012130566574342083
SYSHIMALI	9	Oxidation (M)	_SYSHIM(Oxidation (M))ALI_		SYSHIM(1)ALI		SYSHIM(74)ALI	0	0	1		ENST00000489324.1_1_1:155289446-155290397:+|nuORF;nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS	ENST00000489324.1_1_1:155289446-155290397:+|nuORF	ENST00000489324.1_1_1:155289446-155290397:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7680053710938	2	525.76806	1049.52157	1.1474	0.00060325	-0.78374	-0.00041206	0.36364	0.00019119	525.7676273152985	50.449	1.1099	50.47	50.095	51.205	0.020691					112	41	4	0	0	0	0.013258	1	11714	11714		74.423	42.306	1	3223100			47397	5483	27137	27138	58078	58078		659			-0.0012130566574342083
SYSMEHFRW	9	Unmodified	_SYSMEHFRW_					0	0	0		ENSG00000115138|ENST00000395826|POMC	ENSG00000115138|ENST00000395826|POMC	ENSG00000115138|ENST00000395826|POMC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.8114013671875	2	621.771665	1241.52878	0.39533	0.0002458	1.629	0.0010129	2.0243	0.0012587	621.773132509517	64.446	0.50566	64.436	64.128	64.634	-0.0095367					26	18	2	0	0	0	0.25417	1	15985	15985		8.5933	0	1	184540			47398	2609	27138	27139	58079	58079					-0.08232573065311044
SYSMIVNNL	9	Oxidation (M)	_SYSM(Oxidation (M))IVNNL_		SYSM(1)IVNNL		SYSM(200)IVNNL	0	0	1		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP;CACYBP|p.E177Rfs*15|1|0.26|ENSG00000116161|chr1:175008700-175008700|A/-|frameshift_variant;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.75537109375	2	528.755149	1055.49575	0.64836	0.00034282	-0.075046	-3.9681E-05	0.57331	0.00030314	528.7551662989915	56.781	2.1756	56.781	56.212	58.387	0					204	79	5	0	0	0	1.5552E-11	4	13633	13536;13584;13633;13676		198.25	126.33	1	11641000			47399	86	27139	27140	58080;58081;58082;58083	58082		6			-0.029781999080341848
SYSMIVNNL	9	Oxidation (M)	_SYSM(Oxidation (M))IVNNL_		SYSM(1)IVNNL		SYSM(210)IVNNL	0	0	1		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP;CACYBP|p.E177Rfs*15|1|0.26|ENSG00000116161|chr1:175008700-175008700|A/-|frameshift_variant;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7554321289062	2	528.755149	1055.49575	0.67094	0.00035477	-0.0010731	-5.674E-07	0.66987	0.0003542	528.7551828169768	56.499	2.1845	56.577	56.221	58.405	0.078671					202	80	5	0	0	0	1.0663E-16	4	13593	13504;13552;13593;13641		214.41	132.52	1	11338000			47400	86	27139	27140	58084;58085;58086;58087	58086		6			-0.029781999080341848
SYSMIVNNL	9	Oxidation (M)	_SYSM(Oxidation (M))IVNNL_		SYSM(1)IVNNL		SYSM(200)IVNNL	0	0	1		ENST00000469173.1_1_1:174976108-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-3|CACYBP;CACYBP|p.E177Rfs*15|1|0.26|ENSG00000116161|chr1:175008700-175008700|A/-|frameshift_variant;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	ENST00000469173.1_1_1:174976108-174977843:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7554321289062	2	528.755149	1055.49575	0.91094	0.00048167	-0.080329	-4.2474E-05	0.83061	0.00043919	528.7551414023549	56.694	2.1124	56.675	56.352	58.465	-0.019077					183	77	4	0	0	0	1.5552E-11	4	13638	13590;13638;13689;13732		198.25	126.33	1	11560000			47401	86	27139	27140	58088;58089;58090;58091	58089		6			-0.029781999080341848
SYSPLLREF	9	Unmodified	_SYSPLLREF_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.292236328125	2	556.292756	1110.57096	0.38111	0.00021201	-2.158	-0.0012005	-1.7769	-0.00098847	556.2923531045503	58.753	0.62471	58.845	58.586	59.211	0.091301					46	21	3	0	0	0	0.060198	1	14237	14237		71.708	41.071	1	551900			47402	3498	27140	27141	58092	58092					0.02009725614720992
SYSPLLREF	9	Unmodified	_SYSPLLREF_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2925415039062	2	556.292756	1110.57096	0.33597	0.0001869	-1.7517	-0.00097444	-1.4157	-0.00078754	556.2927376611409	58.94	0.84657	58.926	58.523	59.37	-0.014267					54	29	3	0	0	0	0.015027	1	14312	14312		71.708	41.071	1	608510			47403	3498	27140	27141	58093	58093					0.02009725614720992
SYSPLLREF	9	Unmodified	_SYSPLLREF_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	556.292756	1110.57096	0.32274	0.00017954	-2.0127	-0.0011196	-1.6899	-0.00094009	556.292585506792	58.883	0.53275	58.883	58.682	59.215	0	-0.0012355	-1.3963E-05	NaN	71.708	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	660170			47404	3498	27140	27141							0.02009725614720992
SYSPQAFKF	9	Unmodified	_SYSPQAFKF_					0	0	0		nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1	nc|ENSG00000131023|O95835-2|LATS1	nc|ENSG00000131023|O95835-2|LATS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.3110961914062	2	537.766374	1073.5182	0.54464	0.00029289	0.99879	0.00053712	1.5434	0.00083001	537.767132828404	52.631	1.072	52.631	52.239	53.311	0					79	38	4	0	0	0	0.026033	1	12357	12357		82.529	42.572	1	1384600			47405	3537	27141	27142	58094	58094					-0.01562232448100076
SYSPQAFKF	9	Unmodified	_SYSPQAFKF_					0	0	0		nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1	nc|ENSG00000131023|O95835-2|LATS1	nc|ENSG00000131023|O95835-2|LATS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.3110961914062	2	537.766374	1073.5182	0.52538	0.00028253	0.90736	0.00048795	1.4327	0.00077048	537.7670007547672	52.555	0.84521	52.606	52.228	53.073	0.050575					68	30	3	0	0	0	0.044188	1	12386	12386		76.825	36.867	1	1463100			47406	3537	27141	27142	58095	58095					-0.01562232448100076
SYSPQAFKF	9	Unmodified	_SYSPQAFKF_					0	0	0		nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1	nc|ENSG00000131023|O95835-2|LATS1	nc|ENSG00000131023|O95835-2|LATS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.3112182617188	2	537.766374	1073.5182	0.47664	0.00025632	0.3467	0.00018644	0.82334	0.00044277	537.7666020684856	52.854	0.63077	52.854	52.495	53.126	-0.00080872					56	22	3	0	0	0	0.12563	1	12378	12378		47.749	24.6	1	1382600			47407	3537	27141	27142	58096	58096					-0.01562232448100076
SYSPYAFKF	9	Unmodified	_SYSPYAFKF_					0	0	0		LATS2|p.H691Qfs*36|1|0.26|ENSG00000150457|chr13:20983633-20983634|-/T|frameshift_variant;ENSG00000150457|ENST00000382592|LATS2	LATS2|p.H691Qfs*36|1|0.26|ENSG00000150457|chr13:20983633-20983634|-/T|frameshift_variant	LATS2|p.H691Qfs*36|1|0.26|ENSG00000150457|chr13:20983633-20983634|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.28466796875	2	555.26875	1108.52295	0.089409	4.9646E-05	0.72191	0.00040086	0.81132	0.0004505	555.2689204034539	60.345	0.34574	60.345	60.175	60.521	0					22	12	3	0	0	0	0.10197	1	14739	14739		37.974	9.4872	1	257150			47408	4909	27142	27143	58097	58097					-0.026973483053552627
SYSPYAFKF	9	Unmodified	_SYSPYAFKF_					0	0	0		LATS2|p.H691Qfs*36|1|0.26|ENSG00000150457|chr13:20983633-20983634|-/T|frameshift_variant;ENSG00000150457|ENST00000382592|LATS2	LATS2|p.H691Qfs*36|1|0.26|ENSG00000150457|chr13:20983633-20983634|-/T|frameshift_variant	LATS2|p.H691Qfs*36|1|0.26|ENSG00000150457|chr13:20983633-20983634|-/T|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2847290039062	2	555.26875	1108.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.192	1	60.287	59.787	60.787	0.095093								0	0	0	0.13597	1	14699	14699		37.974	1.9298	1				47409	4909	27142	27143	58098	58098					-0.026973483053552627
SYSQSSNLF	9	Unmodified	_SYSQSSNLF_					0	0	0		ENST00000589881.5_1_18:32917198-32917747:-|nuORF;ENSG00000172466|ENST00000261332|ZNF24	ENST00000589881.5_1_18:32917198-32917747:-|nuORF	ENST00000589881.5_1_18:32917198-32917747:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7355346679688	2	516.735271	1031.45599	0.56722	0.0002931	0.072413	3.7418E-05	0.63963	0.00033052	516.7351908495413	50.268	0.76143	50.268	49.976	50.738	0					71	27	4	0	0	0	6.5985E-11	2	11672	11624;11672		181.69	67.042	1	1859700			47410	6636	27143	27144	58099;58100	58100					-0.05848003587107087
SYSQSSNLF	9	Unmodified	_SYSQSSNLF_					0	0	0		ENST00000589881.5_1_18:32917198-32917747:-|nuORF;ENSG00000172466|ENST00000261332|ZNF24	ENST00000589881.5_1_18:32917198-32917747:-|nuORF	ENST00000589881.5_1_18:32917198-32917747:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7352905273438	2	516.735271	1031.45599	0.79561	0.00041112	-0.10519	-5.4356E-05	0.69041	0.00035676	516.7350991761176	50.22	0.86489	50.265	49.981	50.846	0.044891					80	31	4	0	0	0	6.5985E-11	2	11607	11607;11651		181.69	67.042	1	1905600			47411	6636	27143	27144	58101;58102	58101					-0.05848003587107087
SYSQSSNLF	9	Unmodified	_SYSQSSNLF_					0	0	0		ENST00000589881.5_1_18:32917198-32917747:-|nuORF;ENSG00000172466|ENST00000261332|ZNF24	ENST00000589881.5_1_18:32917198-32917747:-|nuORF	ENST00000589881.5_1_18:32917198-32917747:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7355346679688	2	516.735271	1031.45599	0.79036	0.0004084	-0.18927	-9.7803E-05	0.60109	0.0003106	516.7350803116276	50.251	0.90652	50.272	49.939	50.846	0.020691					82	33	3	0	0	0	2.973E-07	2	11656	11609;11656		168.54	53.888	1	1835700			47412	6636	27143	27144	58103;58104	58104					-0.05848003587107087
SYSSIASEF	9	Unmodified	_SYSSIASEF_					0	0	0		ENSG00000166479|ENST00000299608|TMX3;nc|ENSG00000166479|Q96JJ7-2|TMX3	ENSG00000166479|ENST00000299608|TMX3	ENSG00000166479|ENST00000299608|TMX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2870788574219	2	495.724372	989.434192	0.443	0.00021961	0.081886	4.0593E-05	0.52488	0.0002602	495.72437796334015	58.951	0.47161	59.042	58.74	59.211	0.091305					20	16	2	0	0	0	0.19839	1	14319	14319		21.747	0	1	161390			47413	6084	27144	27145	58105	58105					-0.060948083356493044
SYSSIASEF	9	Unmodified	_SYSSIASEF_					0	0	0		ENSG00000166479|ENST00000299608|TMX3;nc|ENSG00000166479|Q96JJ7-2|TMX3	ENSG00000166479|ENST00000299608|TMX3	ENSG00000166479|ENST00000299608|TMX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2872314453125	2	495.724372	989.434192	0.4728	0.00023438	0.1364	6.7616E-05	0.6092	0.000302	495.72437500008647	59.172	0.42302	59.158	58.917	59.34	-0.014267					20	14	2	0	0	0	0.1524	1	14391	14391		25.399	9.5521	1	178800			47414	6084	27144	27145	58106	58106					-0.060948083356493044
SYSSTFHSL	9	Unmodified	_SYSSTFHSL_					0	0	0		nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000266338|ENST00000581897|NBPF15;ENSG00000263956|ENST00000682118|NBPF11;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000268043|ENST00000698835|NBPF12;ENST00000491285.1_1:146215077-146250826:-|nuORF;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271383|ENST00000651566|NBPF19;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14	nc|ENSG00000269713|P0DPF3-2|NBPF9	nc|ENSG00000269713|P0DPF3-2|NBPF9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7380981445312	2	514.737814	1027.46108	0.20279	0.00010438	0.42033	0.00021636	0.62312	0.00032074	514.7379321162449	40.892	0.59179	40.892	40.634	41.225	0					61	21	4	0	0	0	0.082808	1	8750	8750		49.933	24.534	1	810080			47415	8690	27145	27146	58107	58107					-0.05155699724468832
SYSSTFHSL	9	Unmodified	_SYSSTFHSL_					0	0	0		nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000266338|ENST00000581897|NBPF15;ENSG00000263956|ENST00000682118|NBPF11;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000268043|ENST00000698835|NBPF12;ENST00000491285.1_1:146215077-146250826:-|nuORF;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271383|ENST00000651566|NBPF19;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14	nc|ENSG00000269713|P0DPF3-2|NBPF9	nc|ENSG00000269713|P0DPF3-2|NBPF9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7979736328125	2	514.737814	1027.46108	0.42152	0.00021697	-0.01744	-8.977E-06	0.40408	0.000208	514.7377446234269	40.525	0.6359	40.617	40.369	41.005	0.09267					52	23	3	0	0	0	0.057684	1	8649	8649		58.679	38.225	1	978590			47416	8690	27145	27146	58108	58108					-0.05155699724468832
SYSSTFHSL	9	Unmodified	_SYSSTFHSL_					0	0	0		nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000266338|ENST00000581897|NBPF15;ENSG00000263956|ENST00000682118|NBPF11;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000268043|ENST00000698835|NBPF12;ENST00000491285.1_1:146215077-146250826:-|nuORF;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271383|ENST00000651566|NBPF19;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14	nc|ENSG00000269713|P0DPF3-2|NBPF9	nc|ENSG00000269713|P0DPF3-2|NBPF9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7379760742188	2	514.737814	1027.46108	0.29085	0.00014971	0.07915	4.0742E-05	0.37	0.00019046	514.7378471399173	40.463	0.54412	40.563	40.34	40.884	0.099403					48	19	3	0	0	0	0.030157	1	8635	8635		49.933	49.933	1	1154400			47417	8690	27145	27146	58109	58109					-0.05155699724468832
SYSTSLIGLTF	11	Unmodified	_SYSTSLIGLTF_					0	0	0		nc|ENSG00000175606|Q9BUB7-2|TMEM70;ENSG00000175606|ENST00000312184|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8111572265625	2	594.810979	1187.6074	0.68526	0.0004076	0.18569	0.00011045	0.87095	0.00051805	594.8112654288414	84.787	0.69334	84.787	84.376	85.069	0					40	25	2	0	0	0	0.010867	1	22213	22213		67.838	50.725	1	364070			47418	6876	27146	27147	58110	58110					0.021105577207436
SYSTSLIGLTF	11	Unmodified	_SYSTSLIGLTF_					0	0	0		nc|ENSG00000175606|Q9BUB7-2|TMEM70;ENSG00000175606|ENST00000312184|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8113403320312	2	594.810979	1187.6074	0.70875	0.00042157	-0.31895	-0.00018972	0.38979	0.00023185	594.8110313079545	84.664	0.65291	84.745	84.394	85.047	0.080887					42	25	2	0	0	0	0.0034989	3	22187	22187;22236;22244		83.429	55.8	1	428950			47419	6876	27146	27147	58111;58112;58113	58111					0.021105577207436
SYSTSLIGLTF	11	Unmodified	_SYSTSLIGLTF_					0	0	0		nc|ENSG00000175606|Q9BUB7-2|TMEM70;ENSG00000175606|ENST00000312184|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8111572265625	2	594.810979	1187.6074	0.61923	0.00036833	-0.31413	-0.00018685	0.3051	0.00018148	594.8111261998507	84.776	0.67374	84.763	84.465	85.139	-0.01284					47	27	2	0	0	0	0.0047998	2	22214	22167;22214		80.676	53.047	1	392380			47420	6876	27146	27147	58114;58115	58115					0.021105577207436
SYSVLQQSF	9	Unmodified	_SYSVLQQSF_					0	0	0			REV__ENST00000226725.10_1_4:166160001-166184388:+|nuORF	REV__ENST00000226725.10_1_4:166160001-166184388:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.76171875	2	529.761289	1057.50803	0.38577	0.00020436	-0.052534	-2.7831E-05	0.33323	0.00017653	529.7612951612355	42.292	0.74032	42.378	42.121	42.861	0.085197					60	26	3	0	0	0	0.1939	1	9194	9194		24.021	5.8742	1	1281900	+		47421	19441	27147	27148	58116	58116					-0.018428401733444844
SYSVLQQSF	9	Unmodified	_SYSVLQQSF_					0	0	0			REV__ENST00000226725.10_1_4:166160001-166184388:+|nuORF	REV__ENST00000226725.10_1_4:166160001-166184388:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7615356445312	2	529.761289	1057.50803	0.55651	0.00029482	-0.47529	-0.00025179	0.081217	4.3026E-05	529.7612012304083	42.219	0.97428	42.31	41.929	42.903	0.091362					71	34	4	0	0	0	0.082808	1	9146	9146		58.679	14.821	1	1259600	+		47422	19441	27147	27148	58117	58117					-0.018428401733444844
SYSYVDMII	9	Unmodified	_SYSYVDMII_					0	0	0			REV__ENST00000515235.6_1_5:118829562-118961685:+|nuORF	REV__ENST00000515235.6_1_5:118829562-118961685:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.74609375	2	545.759901	1089.50525	0.67678	0.00036936	-2.5962	-0.0014169	-1.9194	-0.0010475	545.7582145966841	71.874	0.3239	71.847	71.793	72.117	-0.027275					13	11	2	0	0	0	0.1669	1	18284	18284		28.487	1.6032	1	243690	+		47423	15639	27148	27149	58118	58118					-0.03592431622496406
SYTALFPQL	9	Unmodified	_SYTALFPQL_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2761840820312	2	520.276575	1038.5386	0.40676	0.00021163	-0.3475	-0.0001808	0.059263	3.0833E-05	520.2763303152608	80.874	3.1032	80.874	80.097	83.2	0					283	126	5	0	0	0	0.12642	1	20893	20893		34.402	3.1334	1	6954600			47424	374	27149	27150	58119	58119					0.020869382117098212
SYTALFPQL	9	Unmodified	_SYTALFPQL_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2757568359375	2	520.276575	1038.5386	0.16067	8.359E-05	-0.083934	-4.3669E-05	0.076731	3.9922E-05	520.2764695008022	80.811	2.8405	80.876	79.339	82.179	0.065094					281	121	5	0	0	0	0.12642	2	20848	20848;20901		34.402	4.0906	1	8036200			47425	374	27149	27150	58120;58121	58120					0.020869382117098212
SYTALFPQL	9	Unmodified	_SYTALFPQL_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2761840820312	2	520.276575	1038.5386	0.37807	0.0001967	-0.40582	-0.00021114	-0.027754	-1.444E-05	520.2762616952652	80.955	4.5903	80.928	79.398	83.988	-0.026825					299	185	3	0	0	0	0.12642	2	20882	20882;20932		34.402	9.4108	1	7051300			47426	374	27149	27150	58122;58123	58122					0.020869382117098212
SYTAVQKKLL	10	Unmodified	_SYTAVQKKLL_					0	0	0			REV__nc|ENSG00000239605|Q8N801-2|STPG4	REV__nc|ENSG00000239605|Q8N801-2|STPG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8441772460938	2	575.845156	1149.67576	0.3573	0.00020575	-2.3512	-0.0013539	-1.9939	-0.0011482	575.8431080000703	91.368	0.35688	91.458	91.229	91.586	0.090668					40	27	2	0	0	0	0.39935	1	24239	24239		3.5965	0.60125	1	172070	+		47427	19162	27150	27151	58124	58124					0.10690847091291289
SYTDQAFFSF	10	Unmodified	_SYTDQAFFSF_					0	0	0		chr3:155829755-155829856|505|14.1|0.8|4.14|-|ENST00000644855|SLC33A1,SLC33A1;ENSG00000169359|ENST00000643144|SLC33A1	chr3:155829755-155829856|505|14.1|0.8|4.14|-|ENST00000644855|SLC33A1,SLC33A1	chr3:155829755-155829856|505|14.1|0.8|4.14|-|ENST00000644855|SLC33A1,SLC33A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.36962890625	2	606.764029	1211.5135	0.27506	0.00016689	0.82497	0.00050056	1.1	0.00066746	606.7641913565595	81.78	0.24744	81.849	81.703	81.95	0.068993					14	10	2	0	0	0	0.31207	1	21315	21315		17.443	2.6044	1	55811			47428	160	27151	27152	58125	58125					-0.08379161381526501
SYTGIIHAF	9	Unmodified	_SYTGIIHAF_					0	0	0		ENSG00000122912|ENST00000609923|SLC25A16	ENSG00000122912|ENST00000609923|SLC25A16	ENSG00000122912|ENST00000609923|SLC25A16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7615661621094	2	504.761092	1007.50763	0.49152	0.0002481	1.3803	0.00069672	1.8718	0.00094483	504.76160126500986	56.542	0.77141	56.542	56.37	57.141	0					52	28	3	0	0	0	0.000573	1	13623	13623		123.1	78.689	1	723250			47429	3078	27152	27153	58126	58126					0.004177848974677545
SYTGIIHAF	9	Unmodified	_SYTGIIHAF_					0	0	0		ENSG00000122912|ENST00000609923|SLC25A16	ENSG00000122912|ENST00000609923|SLC25A16	ENSG00000122912|ENST00000609923|SLC25A16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7616271972656	2	504.761092	1007.50763	0.89829	0.00045342	0.78063	0.00039403	1.6789	0.00084745	504.7612313027129	56.72	0.80171	56.701	56.456	57.257	-0.019077					59	28	3	0	0	0	0.15464	1	13679	13679		38.151	17.698	1	880970			47430	3078	27152	27153	58127	58127					0.004177848974677545
SYTGIIHAF	9	Unmodified	_SYTGIIHAF_					0	0	0		ENSG00000122912|ENST00000609923|SLC25A16	ENSG00000122912|ENST00000609923|SLC25A16	ENSG00000122912|ENST00000609923|SLC25A16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	504.761092	1007.50763	0.65851	0.00033239	1.4851	0.00074961	2.1436	0.001082	504.7616019026988	56.427	0.55209	56.505	56.331	56.883	0.078674	-0.077293	0.00027674	NaN	123.1	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	841080			47431	3078	27152	27153							0.004177848974677545
SYTHIQYLF	9	Unmodified	_SYTHIQYLF_					0	0	0		nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C;SH2D3C|p.L729Sfs*10|1|0.23|ENSG00000095370|chr9:127740273-127740273|G/-|frameshift_variant	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.2927856445312	2	586.292756	1170.57096	0.35423	0.00020768	-1.2256	-0.00071857	-0.87139	-0.00051089	586.2927175541537	62.181	1.2101	62.181	61.537	62.747	0					103	44	4	0	0	0	0.0079761	3	15305	15305;15350;15399		82.529	36.83	1	6627400			47432	1449	27153	27154	58128;58129;58130	58128					-0.007502743853137872
SYTHIQYLF	9	Unmodified	_SYTHIQYLF_					0	0	0		nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C;SH2D3C|p.L729Sfs*10|1|0.23|ENSG00000095370|chr9:127740273-127740273|G/-|frameshift_variant	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.2928466796875	2	586.292756	1170.57096	0.1429	8.3782E-05	-1.6698	-0.00097902	-1.5269	-0.00089523	586.2925718471416	62.114	1.4648	62.211	61.273	62.738	0.096985					136	53	4	0	0	0	0.0079761	3	15325	15278;15325;15380		82.529	38.032	1	7010800			47433	1449	27153	27154	58131;58132;58133	58132					-0.007502743853137872
SYTHIQYLF	9	Unmodified	_SYTHIQYLF_					0	0	0		nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C;SH2D3C|p.L729Sfs*10|1|0.23|ENSG00000095370|chr9:127740273-127740273|G/-|frameshift_variant	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.2929077148438	2	586.292756	1170.57096	0.33637	0.00019721	-1.3373	-0.00078404	-1.0009	-0.00058683	586.2924833756169	62.179	1.3308	62.17	61.4	62.731	-0.0085526					115	48	4	0	0	0	0.0033114	3	15338	15293;15338;15388		99.799	49.866	1	6709000			47434	1449	27153	27154	58134;58135;58136	58135					-0.007502743853137872
SYTKINLRW	9	Unmodified	_SYTKINLRW_					0	0	0		L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|42|1|sense	L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|42|1|sense	L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|42|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.826171875	2	590.827298	1179.64004	0.046155	2.7269E-05	-0.95565	-0.00056462	-0.90949	-0.00053735	590.8267017858274	12.347	0.31027	12.347	12.245	12.555	0					12	9	2	0	0	0	0.35563	1	115	115		0.52476	0	1	31628			47435	12489	27154	27155	58137	58137					0.05740809634266952
SYTKINLRW	9	Unmodified	_SYTKINLRW_					0	0	0		L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|42|1|sense	L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|42|1|sense	L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|42|1|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	590.827298	1179.64004	0.10096	5.9648E-05	-1.1658	-0.00068881	-1.0649	-0.00062916	590.8263254830654	12.353	0.14603	12.256	12.178	12.324	-0.096607	-0.044613	-0.00022593	NaN	0.52476	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33914			47436	12489	27154	27155							0.05740809634266952
SYTLRILRQ	9	Unmodified	_SYTLRILRQ_					0	0	0		nc|ENSG00000162739|Q96DU3-2|SLAMF6;ENSG00000162739|ENST00000368057|SLAMF6	nc|ENSG00000162739|Q96DU3-2|SLAMF6	nc|ENSG00000162739|Q96DU3-2|SLAMF6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3516235351562	2	575.340572	1148.66659	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.845	1	89.845	89.345	90.345	-0.00080872								0	0	0	0.24715	1	23779	23779		7.2892	0.56607	1				47437	5609	27155	27156	58138	58138					0.09820498525596122
SYTNVYRMF	9	Oxidation (M)	_SYTNVYRM(Oxidation (M))F_		SYTNVYRM(1)F		SYTNVYRM(150)F	0	0	1		ENSG00000166840|ENST00000532726|GLYATL1;ENST00000534119.1_1_11:58715222-58723497:+|nuORF;nc|ENSG00000166840|Q969I3-2|GLYATL1	ENSG00000166840|ENST00000532726|GLYATL1	ENSG00000166840|ENST00000532726|GLYATL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.7733764648438	2	598.773874	1195.53319	0.27439	0.0001643	0.038723	2.3187E-05	0.31311	0.00018748	598.7733590650697	46.31	0.78554	46.31	46.003	46.789	0					50	28	2	0	0	0	7.3453E-05	2	10521	10430;10521		145.13	120.14	1	1089800			47438	6119	27156	27157	58139;58140	58140		716			-0.05675108642435589
SYTNVYRMF	9	Oxidation (M)	_SYTNVYRM(Oxidation (M))F_		SYTNVYRM(1)F		SYTNVYRM(120)F	0	0	1		ENSG00000166840|ENST00000532726|GLYATL1;ENST00000534119.1_1_11:58715222-58723497:+|nuORF;nc|ENSG00000166840|Q969I3-2|GLYATL1	ENSG00000166840|ENST00000532726|GLYATL1	ENSG00000166840|ENST00000532726|GLYATL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.775146484375	2	598.773874	1195.53319	0.22549	0.00013502	0.12971	7.767E-05	0.3552	0.00021269	598.773938771995	45.996	0.57664	46.056	45.871	46.448	0.059834					38	20	3	0	0	0	0.0013683	2	10302	10302;10355		118.07	94.048	1	417860			47439	6119	27156	27157	58141;58142	58141		716			-0.05675108642435589
SYTNVYRMF	9	Oxidation (M)	_SYTNVYRM(Oxidation (M))F_		SYTNVYRM(1)F		SYTNVYRM(110)F	0	0	1		ENSG00000166840|ENST00000532726|GLYATL1;ENST00000534119.1_1_11:58715222-58723497:+|nuORF;nc|ENSG00000166840|Q969I3-2|GLYATL1	ENSG00000166840|ENST00000532726|GLYATL1	ENSG00000166840|ENST00000532726|GLYATL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.7739868164062	2	598.773874	1195.53319	0.35542	0.00021281	-0.44281	-0.00026514	-0.087395	-5.233E-05	598.7734637240436	46.181	0.74091	46.246	45.872	46.613	0.065048					50	26	2	0	0	0	0.0024096	3	10338	10291;10338;10473		106.94	82.92	1	707890			47440	6119	27156	27157	58143;58144;58145	58144		716			-0.05675108642435589
SYTNVYRMF	9	Oxidation (M)	_SYTNVYRM(Oxidation (M))F_					0	0	1		ENSG00000166840|ENST00000532726|GLYATL1;ENST00000534119.1_1_11:58715222-58723497:+|nuORF;nc|ENSG00000166840|Q969I3-2|GLYATL1	ENSG00000166840|ENST00000532726|GLYATL1	ENSG00000166840|ENST00000532726|GLYATL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	598.773874	1195.53319	0.46802	0.00028024	-0.73313	-0.00043898	-0.26511	-0.00015874	598.7731608361413	46.25	0.40102	46.309	46.209	46.61	0.059834	0.021187	-0.0003755	NaN	145.13	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	700430			47441	6119	27156	27157				716			-0.05675108642435589
SYTPVGLIQNL	11	Unmodified	_SYTPVGLIQNL_					0	0	0		ENST00000556473.1_1_14:23236245-23237424:+|nuORF;ENST00000483939.6_1_14:23235910-23237424:+|nuORF;ENST00000473744.5_1_14:23235910-23239613:+|nuORF;ENST00000481218.1_1_14:23236498-23239613:+|nuORF;ENST00000495424.5_1_14:23235916-23239613:+|nuORF;nc|ENSG00000155463|Q15070-3|OXA1L;nc|ENSG00000155463|Q15070-2|OXA1L;ENSG00000155463|ENST00000612549|OXA1L	ENST00000556473.1_1_14:23236245-23237424:+|nuORF	ENST00000556473.1_1_14:23236245-23237424:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.8328247070312	2	602.832246	1203.64994	0.67372	0.00040614	-0.27224	-0.00016412	0.40147	0.00024202	602.831964162174	79.153	0.35992	79.153	78.929	79.289	0					29	15	2	0	0	0	0.28258	1	20538	20538		23.79	14.407	1	147060			47442	5176	27157	27158	58146	58146					0.056259528490272714
SYTPVGLIQNL	11	Unmodified	_SYTPVGLIQNL_					0	0	0		ENST00000556473.1_1_14:23236245-23237424:+|nuORF;ENST00000483939.6_1_14:23235910-23237424:+|nuORF;ENST00000473744.5_1_14:23235910-23239613:+|nuORF;ENST00000481218.1_1_14:23236498-23239613:+|nuORF;ENST00000495424.5_1_14:23235916-23239613:+|nuORF;nc|ENSG00000155463|Q15070-3|OXA1L;nc|ENSG00000155463|Q15070-2|OXA1L;ENSG00000155463|ENST00000612549|OXA1L	ENST00000556473.1_1_14:23236245-23237424:+|nuORF	ENST00000556473.1_1_14:23236245-23237424:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	602.832246	1203.64994	0.66952	0.00040361	-0.44904	-0.0002707	0.22048	0.00013291	602.8316963483857	79.068	0.50744	79.13	78.846	79.353	0.061417	-0.019755	-8.0543E-05	NaN	23.79	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162590			47443	5176	27157	27158							0.056259528490272714
SYTPVGLIQNL	11	Unmodified	_SYTPVGLIQNL_					0	0	0		ENST00000556473.1_1_14:23236245-23237424:+|nuORF;ENST00000483939.6_1_14:23235910-23237424:+|nuORF;ENST00000473744.5_1_14:23235910-23239613:+|nuORF;ENST00000481218.1_1_14:23236498-23239613:+|nuORF;ENST00000495424.5_1_14:23235916-23239613:+|nuORF;nc|ENSG00000155463|Q15070-3|OXA1L;nc|ENSG00000155463|Q15070-2|OXA1L;ENSG00000155463|ENST00000612549|OXA1L	ENST00000556473.1_1_14:23236245-23237424:+|nuORF	ENST00000556473.1_1_14:23236245-23237424:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	602.832246	1203.64994	0.60813	0.0003666	-0.60636	-0.00036553	0.0017706	1.0674E-06	602.8315652450616	79.194	0.40882	79.165	78.896	79.305	-0.028923	0.01582	-0.00027022	NaN	23.79	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117790			47444	5176	27157	27158							0.056259528490272714
SYTPVLNQF	9	Unmodified	_SYTPVLNQF_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7719116210938	2	534.771657	1067.52876	0.55986	0.0002994	0.088132	4.713E-05	0.64799	0.00034653	534.7713717715875	64.737	0.89033	64.737	64.483	65.373	0					66	32	3	0	0	0	0.0023784	1	16109	16109		107.19	45.83	1	711810			47445	8109	27158	27159	58147	58147					-0.0023024979368528875
SYTPVLNQF	9	Unmodified	_SYTPVLNQF_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7716064453125	2	534.771657	1067.52876	0.45599	0.00024385	0.071542	3.8259E-05	0.52753	0.00028211	534.7713293488296	64.666	0.8822	64.759	64.445	65.327	0.09288					61	32	3	0	0	0	0.0028626	1	16079	16079		103.35	51.085	1	704490			47446	8109	27158	27159	58148	58148					-0.0023024979368528875
SYTRLFSNF	9	Unmodified	_SYTRLFSNF_					0	0	0		ENST00000490112.1_1_3:33438535-33441732:-|nuORF;ENST00000486388.5_1_3:33438291-33450199:-|nuORF;nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1	ENST00000490112.1_1_3:33438535-33441732:-|nuORF	ENST00000490112.1_1_3:33438535-33441732:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.7814331054688	2	567.782556	1133.55056	-0.10533	-5.9803E-05	-1.5403	-0.00087456	-1.6456	-0.00093437	567.7816842401977	59.937	0.92682	59.937	59.621	60.548	0					80	33	4	0	0	0	0.00013073	1	14602	14602		135.86	77.185	1	4975200			47447	5080	27159	27160	58149	58149					-0.010874450451183293
SYTRLFSNF	9	Unmodified	_SYTRLFSNF_					0	0	0		ENST00000490112.1_1_3:33438535-33441732:-|nuORF;ENST00000486388.5_1_3:33438291-33450199:-|nuORF;nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1	ENST00000490112.1_1_3:33438535-33441732:-|nuORF	ENST00000490112.1_1_3:33438535-33441732:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.7815551757812	2	567.782556	1133.55056	-0.15377	-8.7308E-05	-1.4348	-0.00081467	-1.5886	-0.00090197	567.7817155941501	59.869	1.0001	59.965	59.55	60.55	0.095093					95	36	4	0	0	0	6.0404E-05	1	14555	14555		147.24	88.562	1	4256700			47448	5080	27159	27160	58150	58150					-0.010874450451183293
SYTRLFSNF	9	Unmodified	_SYTRLFSNF_					0	0	0		ENST00000490112.1_1_3:33438535-33441732:-|nuORF;ENST00000486388.5_1_3:33438291-33450199:-|nuORF;nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1	ENST00000490112.1_1_3:33438535-33441732:-|nuORF	ENST00000490112.1_1_3:33438535-33441732:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	567.782556	1133.55056	0.11897	6.7549E-05	-1.433	-0.00081362	-1.314	-0.00074607	567.7817580930398	60.002	0.89187	59.991	59.652	60.544	-0.011482	0.026398	3.9614E-05	NaN	147.24	80	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6454700			47449	5080	27159	27160							-0.010874450451183293
SYTSVKENF	9	Unmodified	_SYTSVKENF_					0	0	0		ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7587280273438	2	537.758746	1073.50294	0.59772	0.00032143	-0.33607	-0.00018072	0.26166	0.00014071	537.7585077438329	35.928	0.69279	35.928	35.665	36.358	0					68	25	4	0	0	0	9.5135E-08	3	7237	7193;7237;7287		176.43	120.25	1	2358000			47450	2443	27160	27161	58151;58152;58153	58152					-0.030871440359533153
SYTSVKENF	9	Unmodified	_SYTSVKENF_					0	0	0		ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7587280273438	2	537.758746	1073.50294	0.49886	0.00026827	-0.15785	-8.4884E-05	0.34101	0.00018338	537.7585644745283	35.799	0.70707	35.882	35.624	36.331	0.082359					71	25	4	0	0	0	9.5135E-08	3	7222	7175;7222;7270		176.43	122.59	1	2321500			47451	2443	27160	27161	58154;58155;58156	58155					-0.030871440359533153
SYTSVKENF	9	Unmodified	_SYTSVKENF_					0	0	0		ENSG00000112584|ENST00000476287|FAM120B;nc|ENSG00000112584|Q96EK7-2|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	ENSG00000112584|ENST00000476287|FAM120B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7587280273438	2	537.758746	1073.50294	0.5865	0.0003154	-0.24742	-0.00013305	0.33909	0.00018235	537.7585470075796	35.761	0.6793	35.847	35.62	36.3	0.086246					68	24	4	0	0	0	4.216E-07	3	7222	7171;7222;7280		163.69	107.51	1	2499600			47452	2443	27160	27161	58157;58158;58159	58158					-0.030871440359533153
SYTTHVSLSFN	11	Unmodified	_SYTTHVSLSFN_					0	0	0			REV__ENST00000354670.8_1_15:40383710-40384025:-|nuORF	REV__ENST00000354670.8_1_15:40383710-40384025:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.3026733398438	2	628.30131	1254.58807	0.83181	0.00052263	-0.58341	-0.00036656	0.2484	0.00015607	628.3012089865009	56.24	0.68513	56.221	55.798	56.483	-0.019081					66	24	4	0	0	0	0.41896	1	13486	13486		8.7454	3.0136	1	1754800	+		47453	20175	27161	27162	58160	58160					-0.02904398570126432
SYTVQHAR	8	Unmodified	_SYTVQHAR_					0	0	0			REV__nc|ENSG00000084734|Q14397|GCKR	REV__nc|ENSG00000084734|Q14397|GCKR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7478942871094	2	481.246141	960.477728	-0.20865	-0.00010041	-0.15278	-7.3525E-05	-0.36143	-0.00017394	481.2461707059327	104.18	0.68884	104.18	103.87	104.56	0					166	91	3	0	0	0	0.34272	1	27615	27615		7.9102	0	1	591280	+		47454	13953	27162	27163	58161	58161					-0.004091540478725619
SYTYLSLGF	9	Unmodified	_SYTYLSLGF_					0	0	0		ENSG00000087086|ENST00000331825|FTL;FTL|p.Q26K|1|0.42|ENSG00000087086|chr19:48965583-48965583|C/A|missense_variant	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7606811523438	2	525.760758	1049.50696	0.48738	0.00025625	-0.29174	-0.00015339	0.19564	0.00010286	525.7604790493095	81.468	0.92909	81.468	81.123	82.052	0					100	38	4	0	0	0	0.0022761	2	21231	21184;21231		108	46.64	1	1356200			47455	1293	27163	27164	58162;58163	58163					-0.015810545422255018
SYTYLSLGF	9	Unmodified	_SYTYLSLGF_					0	0	0		ENSG00000087086|ENST00000331825|FTL;FTL|p.Q26K|1|0.42|ENSG00000087086|chr19:48965583-48965583|C/A|missense_variant	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7606811523438	2	525.760758	1049.50696	0.165	8.6751E-05	0.10424	5.4804E-05	0.26924	0.00014156	525.7606391904571	81.422	0.83085	81.491	81.137	81.968	0.068993					115	40	4	0	0	0	0.0022761	4	21211	21155;21162;21211;21255		108	46.64	1	1222300			47456	1293	27163	27164	58164;58165;58166;58167	58166					-0.015810545422255018
SYTYLSLGF	9	Unmodified	_SYTYLSLGF_					0	0	0		ENSG00000087086|ENST00000331825|FTL;FTL|p.Q26K|1|0.42|ENSG00000087086|chr19:48965583-48965583|C/A|missense_variant	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7608642578125	2	525.760758	1049.50696	0.51358	0.00027002	-0.17503	-9.2022E-05	0.33856	0.000178	525.7604920505275	81.513	0.89658	81.489	81.161	82.058	-0.02404					99	38	4	0	0	0	0.0022761	3	21183	21162;21183;21228		108	46.64	1	1448300			47457	1293	27163	27164	58168;58169;58170	58169					-0.015810545422255018
SYVAGLPRF	9	Unmodified	_SYVAGLPRF_					0	0	0		ENST00000325279.4_1_16:84693236-84695736:+|nuORF;ENSG00000135686|ENST00000564996|KLHL36	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.27691650390625	2	505.276909	1008.53927	0.42347	0.00021397	-0.29446	-0.00014878	0.12902	6.5189E-05	505.27679151532715	57.359	2.3692	57.359	56.398	58.767	0					182	85	4	0	0	0	0.0037772	2	13832	13832;13907		96.111	50.09	1	2249600			47458	3894	27164	27165	58171;58172	58171					0.03533777651421133
SYVAGLPRF	9	Unmodified	_SYVAGLPRF_					0	0	0		ENST00000325279.4_1_16:84693236-84695736:+|nuORF;ENSG00000135686|ENST00000564996|KLHL36	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2771911621094	2	505.276909	1008.53927	0.33148	0.00016749	-0.20513	-0.00010365	0.12636	6.3844E-05	505.27680711850644	57.179	2.3458	57.257	56.543	58.889	0.078674					173	85	3	0	0	0	0.010453	1	13846	13846		78.728	38.771	1	2539500			47459	3894	27164	27165	58173	58173					0.03533777651421133
SYVAGLPRF	9	Unmodified	_SYVAGLPRF_					0	0	0		ENST00000325279.4_1_16:84693236-84695736:+|nuORF;ENSG00000135686|ENST00000564996|KLHL36	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	ENST00000325279.4_1_16:84693236-84695736:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.277099609375	2	505.276909	1008.53927	0.25388	0.00012828	-0.71589	-0.00036172	-0.46201	-0.00023344	505.27688956093976	57.45	1.4385	57.433	56.594	58.033	-0.0172					148	52	5	0	0	0	0.004681	2	13843	13843;13928		88.954	42.933	1	2089900			47460	3894	27164	27165	58174;58175	58174					0.03533777651421133
SYVCVECNFL	10	Unmodified	_SYVCVECNFL_					0	0	0		ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	ENSG00000165156|ENST00000395571|ZHX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3429565429688	2	588.756835	1175.49912	0.49326	0.00029041	0.14822	8.7268E-05	0.64148	0.00037768	588.7565836014026	90.215	0.5155	90.216	90.048	90.563	0.0003891					68	37	2	0	0	0	0.30093	1	23878	23878		21.537	2.28	1	240330			47461	5931	27165	27166	58176	58176					-0.0816127312568824
SYVDEDCDSLA	11	Unmodified	_SYVDEDCDSLA_					0	0	0		ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.1609802246094	3	406.160659	1215.46015	0.21512	8.7374E-05	0.67888	0.00027574	0.89401	0.00036311	406.1609873492227	74.833	0.81406	74.801	74.528	75.342	-0.031487					63	29	3	0	0	0	0.43513	1	19171	19171		6.6235	1.2207	1	815600			47462	5925	27166	27167	58177	58177					-0.13896326946360205
SYVEELVEI	9	Unmodified	_SYVEELVEI_					0	0	0		ENST00000563805.1_1_16:90028494-90030760:+|nuORF;nc|ENSG00000140995|Q6ZN54-4|DEF8;nc|ENSG00000140995|Q6ZN54-6|DEF8;nc|ENSG00000140995|Q6ZN54-3|DEF8;ENSG00000140995|ENST00000563594|DEF8;nc|ENSG00000140995|Q6ZN54|DEF8	ENST00000563805.1_1_16:90028494-90030760:+|nuORF	ENST00000563805.1_1_16:90028494-90030760:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3302612304688	2	540.776605	1079.53866	0.3768	0.00020376	-0.49493	-0.00026765	-0.11813	-6.3883E-05	540.776069180242	76.044	0.35364	76.098	75.862	76.216	0.053413					22	12	3	0	0	0	0.14961	1	19591	19591		34.402	0	1	284580			47463	4350	27167	27168	58178	58178					0.0020689342104560637
SYVEELVEI	9	Unmodified	_SYVEELVEI_					0	0	0		ENST00000563805.1_1_16:90028494-90030760:+|nuORF;nc|ENSG00000140995|Q6ZN54-4|DEF8;nc|ENSG00000140995|Q6ZN54-6|DEF8;nc|ENSG00000140995|Q6ZN54-3|DEF8;ENSG00000140995|ENST00000563594|DEF8;nc|ENSG00000140995|Q6ZN54|DEF8	ENST00000563805.1_1_16:90028494-90030760:+|nuORF	ENST00000563805.1_1_16:90028494-90030760:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3302612304688	2	540.776605	1079.53866	0.54853	0.00029663	-0.49803	-0.00026932	0.0505	2.7309E-05	540.7759682477233	76.161	0.46141	76.13	75.857	76.318	-0.031479					37	16	3	0	0	0	0.18123	1	19562	19562		34.402	13.948	1	232850			47464	4350	27167	27168	58179	58179					0.0020689342104560637
SYVGLVYMF	9	Oxidation (M)	_SYVGLVYM(Oxidation (M))F_		SYVGLVYM(1)F		SYVGLVYM(140)F	0	0	1		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7650756835938	2	547.764986	1093.51542	0.71331	0.00039072	-0.5044	-0.00027629	0.20891	0.00011443	547.7646518790718	78.715	0.95668	78.715	78.358	79.315	0					117	38	4	0	0	0	0.00012008	3	20388	20340;20388;20439		137.59	114.44	1	1728300			47465	2232	27168	27169	58180;58181;58182	58181		274			-0.027598238972814215
SYVGLVYMF	9	Oxidation (M)	_SYVGLVYM(Oxidation (M))F_		SYVGLVYM(1)F		SYVGLVYM(100)F	0	0	1		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7649536132812	2	547.764986	1093.51542	0.74342	0.00040722	-0.36111	-0.0001978	0.38231	0.00020942	547.7646002596165	78.663	1.036	78.721	78.253	79.289	0.058151					123	42	4	0	0	0	0.0030686	3	20317	20317;20364;20412		101.72	84.78	1	1653500			47466	2232	27168	27169	58183;58184;58185	58183		274			-0.027598238972814215
SYVGLVYMF	9	Oxidation (M)	_SYVGLVYM(Oxidation (M))F_		SYVGLVYM(1)F		SYVGLVYM(110)F	0	0	1		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104;ENST00000584246.1_1_17:72773463-72781743:+|nuORF	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7650146484375	2	547.764986	1093.51542	0.85585	0.0004688	-0.43092	-0.00023604	0.42493	0.00023276	547.7645501591005	78.802	1.4021	78.772	78.348	79.75	-0.030434					150	56	4	0	0	0	0.0016131	4	20346	20346;20394;20438;20493		114.94	96.809	1	1662300			47467	2232	27168	27169	58186;58187;58188;58189	58186		274			-0.027598238972814215
SYVHKVPSF	9	Unmodified	_SYVHKVPSF_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2824096679688	2	532.282192	1062.54983	0.58951	0.00031378	-0.21483	-0.00011435	0.37468	0.00019944	532.2819726410434	35.706	0.7345	35.706	35.382	36.117	0					56	26	3	0	0	0	0.022205	1	7168	7168		63.227	32.591	1	513710			47468	3084	27169	27170	58190	58190					0.021057603058579843
SYVHKVPSF	9	Unmodified	_SYVHKVPSF_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.281982421875	2	532.282192	1062.54983	0.42499	0.00022621	-0.39253	-0.00020893	0.03246	1.7278E-05	532.2819144171228	35.565	0.62898	35.647	35.461	36.09	0.082355					34	22	2	0	0	0	0.015027	1	7150	7150		71.708	46.309	1	386720			47469	3084	27169	27170	58191	58191					0.021057603058579843
SYVHKVPSF	9	Unmodified	_SYVHKVPSF_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2820434570312	2	532.282192	1062.54983	0.24904	0.00013256	0.037965	2.0208E-05	0.28701	0.00015277	532.2821622807121	35.553	0.77188	35.639	35.263	36.034	0.086246					45	27	2	0	0	0	0.022205	1	7132	7132		63.227	37.828	1	435800			47470	3084	27169	27170	58192	58192					0.021057603058579843
SYVHLGSGTSE	11	Unmodified	_SYVHLGSGTSE_					0	0	0		ENST00000607031.1_1_1:2318600-2318942:-|nuORF	ENST00000607031.1_1_1:2318600-2318942:-|nuORF	ENST00000607031.1_1_1:2318600-2318942:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.7644653320312	2	568.76456	1135.51457	0.00095616	5.4383E-07	-0.98154	-0.00055827	-0.98059	-0.00055772	568.7640606783021	29.88	1.3209	29.893	29.22	30.541	0.013474					100	45	4	0	0	0	0.36943	1	5335	5335		15.248	4.4246	1	295580			47471	12306	27170	27171	58193	58193					-0.047769470126240776
SYVHYVFRL	9	Unmodified	_SYVHYVFRL_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;DOCK8|p.N1266Ifs*5|1|0.21|ENSG00000107099|chr9:418160-418160|G/-|frameshift_variant	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.2810668945312	2	592.316566	1182.61858	0.67434	0.00039942	0.27545	0.00016316	0.9498	0.00056258	592.3165657428779	53.988	0.43431	53.988	53.834	54.268	0					33	15	3	0	0	0	0.035405	1	12769	12769		79.596	56.86	1	345030			47472	2110	27171	27172	58194	58194					0.034574246055626645
SYVHYVFRL	9	Unmodified	_SYVHYVFRL_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;DOCK8|p.N1266Ifs*5|1|0.21|ENSG00000107099|chr9:418160-418160|G/-|frameshift_variant	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.280517578125	2	592.316566	1182.61858	0.45545	0.00026977	0.35558	0.00021061	0.81103	0.00048038	592.3167964399292	53.981	0.5261	54.037	53.794	54.32	0.056259					40	19	3	0	0	0	0.14646	1	12741	12741		43.772	28.524	1	349410			47473	2110	27171	27172	58195	58195					0.034574246055626645
SYVHYVFRL	9	Unmodified	_SYVHYVFRL_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;DOCK8|p.N1266Ifs*5|1|0.21|ENSG00000107099|chr9:418160-418160|G/-|frameshift_variant	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	592.316566	1182.61858	0.57151	0.00033852	0.36933	0.00021876	0.94085	0.00055728	592.3168488616445	54.293	0.54725	54.278	54.057	54.605	-0.015923	0.17668	4.4994E-05	NaN	79.596	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	594580			47474	2110	27171	27172							0.034574246055626645
SYVIRTTALK	10	Unmodified	_SYVIRTTALK_					0	0	0		ENST00000459872.1_1_6:10557103-10619499:+|nuORF;nc|ENSG00000111846|Q8N0V5-2|GCNT2	ENST00000459872.1_1_6:10557103-10619499:+|nuORF	ENST00000459872.1_1_6:10557103-10619499:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8428344726562	2	576.342781	1150.67101	0.48368	0.00027877	4.0058	0.0023087	4.4895	0.0025875	576.3453617947625	78.89	0.34597	78.89	78.669	79.015	0					19	13	2	0	0	0	0.31847	1	20430	20430		6.7232	3.4419	1	150400			47475	10718	27172	27173	58196	58196					0.10169962948498323
SYVKTIAIL	9	Unmodified	_SYVKTIAIL_					0	0	0		ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.29229736328125	2	504.310418	1006.60628	0.26405	0.00013317	-0.7394	-0.00037289	-0.47535	-0.00023972	504.309770519829	76.386	1.1242	76.386	76.08	77.204	0					51	40	2	0	0	0	0.26879	2	19843	19843;19891		13.508	0	1	170280			47476	435	27173	27174	58197;58198	58197					0.10324388142510088
SYVKTIAIL	9	Unmodified	_SYVKTIAIL_					0	0	0		ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2921142578125	2	504.310418	1006.60628	0.45656	0.00023025	-0.954	-0.00048111	-0.49743	-0.00025086	504.30980753834467	76.442	0.88198	76.411	76.109	76.991	-0.031487					50	32	2	0	0	0	0.26879	1	19823	19823		13.508	1.8676	1	250150			47477	435	27173	27174	58199	58199					0.10324388142510088
SYVKTIAIL	9	Unmodified	_SYVKTIAIL_					0	0	0		ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	ENSG00000011198|ENST00000644371|ABHD5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	504.310418	1006.60628	0.14133	7.1274E-05	-0.43809	-0.00022093	-0.29676	-0.00014966	504.30989173048897	76.342	1.0411	76.396	75.992	77.033	0.053413	-0.0015718	0.00027957	NaN	13.508	53	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155660			47478	435	27173	27174							0.10324388142510088
SYVLRSSLIL	10	Unmodified	_SYVLRSSLIL_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6|DMXL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8428344726562	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.883	1	78.883	78.383	79.383	0								0	0	0	0.36922	1	20430	20430		6.7232	0.99131	1		+		47479	14395	27174	27175	58200	58200					0.10690847091291289
SYVNHLYVI	9	Unmodified	_SYVNHLYVI_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;nc|ENSG00000136237|Q92565-2|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.295166015625	2	554.295299	1106.57605	0.55432	0.00030725	-1.431	-0.00079321	-0.87671	-0.00048596	554.2946114688652	56.483	0.74713	56.483	56.291	57.038	0					40	27	2	0	0	0	0.20626	1	13598	13598		22.736	5.794	1	500630			47480	3956	27175	27176	58201	58201					0.027020294773365094
SYVPKVAGL	9	Unmodified	_SYVPKVAGL_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2738952636719	2	467.273835	932.533118	0.14124	6.6E-05	1.7544	0.0008198	1.8957	0.0008858	467.27377384046906	49.458	0.9999	49.458	49.077	50.077	0					74	36	3	0	0	0	0.10059	2	11359	11359;11407		38.176	20.154	1	808440			47481	3377	27176	27177	58202;58203	58202					0.06415259419895847
SYVPKVAGL	9	Unmodified	_SYVPKVAGL_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2738952636719	2	467.273835	932.533118	0.046578	2.1765E-05	1.684	0.00078689	1.7306	0.00080866	467.2737440014602	49.421	1.0293	49.466	49.184	50.213	0.044891					76	38	3	0	0	0	0.13748	2	11366	11366;11424		32.786	15.176	1	791570			47482	3377	27176	27177	58204;58205	58204					0.06415259419895847
SYVPKVAGL	9	Unmodified	_SYVPKVAGL_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2738037109375	2	467.273835	932.533118	0.11165	5.2169E-05	2.8108	0.0013134	2.9224	0.0013656	467.2737712538256	49.466	1.0909	49.498	49.072	50.163	0.032043					87	39	4	0	0	0	0.13748	2	11399	11348;11399		32.786	14.651	1	780710			47483	3377	27176	27177	58206;58207	58207					0.06415259419895847
SYVQTLVYI	9	Unmodified	_SYVQTLVYI_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2965087890625	2	543.297507	1084.58046	0.18648	0.00010132	-1.1002	-0.00059774	-0.91372	-0.00049642	543.2970424738078	75.79	0.60175	75.79	75.592	76.193	0					38	21	2	0	0	0	0.0073901	1	19477	19477		83.429	35.68	1	966900			47484	8211	27177	27178	58208	58208					0.04155493900248075
SYVQTLVYI	9	Unmodified	_SYVQTLVYI_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2966918945312	2	543.297507	1084.58046	0.52088	0.00028299	-1.1512	-0.00062544	-0.63032	-0.00034245	543.2968436151488	75.702	0.74106	75.754	75.508	76.249	0.052368					62	26	3	0	0	0	0.0073901	2	19446	19446;19497		83.429	32.36	1	933510			47485	8211	27177	27178	58209;58210	58209					0.04155493900248075
SYVQTLVYI	9	Unmodified	_SYVQTLVYI_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2967529296875	2	543.297507	1084.58046	0.61201	0.0003325	0.045754	2.4858E-05	0.65776	0.00035736	543.298511033032	75.816	0.82047	75.784	75.342	76.163	-0.031487					64	29	3	0	0	0	0.0073901	1	19473	19473		83.429	35.68	1	893930			47486	8211	27177	27178	58211	58211					0.04155493900248075
SYVQVTSNF	9	Unmodified	_SYVQVTSNF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.753662109375	2	522.753464	1043.49238	0.5834	0.00030497	0.01135	5.9334E-06	0.59475	0.00031091	522.7534333881534	55.168	0.54253	55.168	54.917	55.46	0					67	19	4	0	0	0	6.0404E-05	2	13136	13136;13184		147.24	66.759	1	4990500			47487	979	27178	27179	58212;58213	58212					-0.027631266903881624
SYVQVTSNF	9	Unmodified	_SYVQVTSNF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7537841796875	2	522.753464	1043.49238	0.67322	0.00035193	-0.025921	-1.355E-05	0.6473	0.00033838	522.7533867024976	55.126	0.57496	55.196	54.898	55.473	0.070885					65	21	4	0	0	0	0.00082904	2	13111	13111;13162		124.95	55.848	1	4513500			47488	979	27178	27179	58214;58215	58214					-0.027631266903881624
SYVQVTSNF	9	Unmodified	_SYVQVTSNF_					0	0	0		ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	ENSG00000072364|ENST00000265343|AFF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7538452148438	2	522.753464	1043.49238	0.53136	0.00027777	0.16436	8.5922E-05	0.69572	0.00036369	522.7534811972622	55.319	0.61321	55.299	55.003	55.616	-0.019081					59	22	3	0	0	0	2.2231E-07	2	13181	13181;13233		171.46	71.665	1	4671200			47489	979	27178	27179	58216;58217	58216					-0.027631266903881624
SYVRSLPFF	9	Unmodified	_SYVRSLPFF_					0	0	0		ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2979736328125	2	558.297842	1114.58113	0.30062	0.00016784	1.202	0.00067107	1.5026	0.00083891	558.2977757190265	68.216	1.2284	68.216	67.809	69.037	0					189	44	6	0	0	0	0.0028542	5	17159	17112;17159;17205;17254;17313		103.42	59.063	1	18259000			47490	6420	27179	27180	58218;58219;58220;58221;58222	58219					0.028423333399587136
SYVRSLPFF	9	Unmodified	_SYVRSLPFF_					0	0	0		ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.297607421875	2	558.297842	1114.58113	0.32783	0.00018303	0.87424	0.00048809	1.2021	0.00067111	558.2977197264045	68.154	1.2762	68.226	67.796	69.072	0.071938					188	46	7	0	0	0	0.0028542	5	17270	17066;17116;17169;17220;17270		103.42	69.317	1	14782000			47491	6420	27179	27180	58223;58224;58225;58226;58227	58227					0.028423333399587136
SYVRSLPFF	9	Unmodified	_SYVRSLPFF_					0	0	0		ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2979736328125	2	558.297842	1114.58113	0.31702	0.00017699	0.69519	0.00038812	1.0122	0.00056512	558.2977982440492	68.262	1.2245	68.243	67.724	68.949	-0.01915					181	43	6	0	0	0	0.0028542	4	17151	17151;17202;17247;17298		103.42	69.317	1	18160000			47492	6420	27179	27180	58228;58229;58230;58231	58228					0.028423333399587136
SYVSFTTKL	9	Unmodified	_SYVSFTTKL_					0	0	0		nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000478122.6_1_12:111052207-111066834:+|nuORF;ENST00000546643.1_1_12:111051980-111066834:+|nuORF;nc|ENSG00000204852|Q2MV58-6|TCTN1;ENST00000397656.8_1_12:111066004-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF	nc|ENSG00000204852|Q2MV58-3|TCTN1	nc|ENSG00000204852|Q2MV58-3|TCTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2710571289062	2	523.281857	1044.54916	0.69471	0.00036353	1.6761	0.00087709	2.3709	0.0012406	523.2826346660329	52.982	0.93053	53.038	52.422	53.353	0.056259					52	33	2	0	0	0	0.20626	1	12508	12508		22.736	7.898	1	604220			47493	8259	27180	27181	58232	58232					0.02866920866131295
SYVSFTTKL	9	Unmodified	_SYVSFTTKL_					0	0	0		nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000478122.6_1_12:111052207-111066834:+|nuORF;ENST00000546643.1_1_12:111051980-111066834:+|nuORF;nc|ENSG00000204852|Q2MV58-6|TCTN1;ENST00000397656.8_1_12:111066004-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF	nc|ENSG00000204852|Q2MV58-3|TCTN1	nc|ENSG00000204852|Q2MV58-3|TCTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2706909179688	2	523.281857	1044.54916	0.5332	0.00027901	-0.045492	-2.3805E-05	0.48771	0.00025521	523.2817894703416	53.259	0.68621	53.249	52.976	53.662	-0.0096054					40	25	2	0	0	0	0.13748	2	12536	12536;12582		32.786	14.639	1	445360			47494	8259	27180	27181	58233;58234	58233					0.02866920866131295
SYVTQSLQL	9	Unmodified	_SYVTQSLQL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3004150390625	2	519.776939	1037.53933	0.14379	7.4741E-05	0.6991	0.00036337	0.84289	0.00043811	519.7776411334047	61.989	0.46635	61.98	61.7	62.167	-0.0085526					27	16	2	0	0	0	0.22143	1	15273	15273		14.405	7.1161	1	365100			47495	692;10077	27181	27182	58235	58235					0.022057328607616
SYVTSPQGFQF	11	Unmodified	_SYVTSPQGFQF_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.7981567382812	2	630.798403	1259.58225	0.38103	0.00024035	0.25241	0.00015922	0.63343	0.00039957	630.7986424921468	68.968	0.55291	68.968	68.76	69.313	0					41	19	3	0	0	0	0.069084	1	17426	17426		64.927	35.086	1	309420			47496	4464	27182	27183	58236	58236					-0.037154970818164657
SYVTSPQGFQF	11	Unmodified	_SYVTSPQGFQF_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.798828125	2	630.798403	1259.58225	0.36402	0.00022963	-0.10677	-6.7349E-05	0.25725	0.00016228	630.7982180415321	68.902	0.48219	68.974	68.781	69.264	0.071938					41	17	3	0	0	0	0.0226	1	17404	17404		73.196	36.69	1	329940			47497	4464	27182	27183	58237	58237					-0.037154970818164657
SYVTSPQGFQF	11	Unmodified	_SYVTSPQGFQF_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	630.798403	1259.58225	0.36541	0.0002305	0.23582	0.00014875	0.60123	0.00037926	630.7982241866852	68.981	0.55721	68.962	68.739	69.296	-0.019157	-0.0059523	0.00015136	NaN	73.196	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301740			47498	4464	27182	27183							-0.037154970818164657
SYVTSVPT	8	Unmodified	_SYVTSVPT_					0	0	0			REV__nc|ENSG00000146755|Q86XT4-2|TRIM50	REV__nc|ENSG00000146755|Q86XT4-2|TRIM50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.2731628417969	2	427.218726	852.422899	-0.23693	-0.00010122	-0.30463	-0.00013014	-0.54156	-0.00023137	427.21847997831924	69.592	0.57754	69.592	69.369	69.946	0					26	20	2	0	0	0	0.28969	1	17655	17655		28.487	1.6032	1	151000	+		47499	16355	27183	27184	58238	58238					-0.00921585639150635
SYVVAMETF	9	Oxidation (M)	_SYVVAM(Oxidation (M))ETF_		SYVVAM(1)ETF		SYVVAM(190)ETF	0	0	1		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.7445068359375	2	531.74425	1061.47395	1.168	0.00062109	-0.54573	-0.00029019	0.62229	0.0003309	531.7438242377916	56.07	1.255	56.07	55.707	56.962	0					96	45	3	0	0	0	4.5012E-11	3	13416	13416;13469;13522		188.58	131.11	1	7379800			47500	259	27184	27185	58239;58240;58241	58239		15			-0.05433004656606499
SYVVAMETF	9	Oxidation (M)	_SYVVAM(Oxidation (M))ETF_		SYVVAM(1)ETF		SYVVAM(190)ETF	0	0	1		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7444458007812	2	531.74425	1061.47395	0.8589	0.00045672	-0.3081	-0.00016383	0.55081	0.00029289	531.7439778640348	55.994	1.1217	56.065	55.727	56.849	0.070885					100	41	3	0	0	0	4.5012E-11	3	13393	13393;13436;13490		188.58	131.11	1	7795600			47501	259	27184	27185	58242;58243;58244	58242		15			-0.05433004656606499
SYVVAMETF	9	Oxidation (M)	_SYVVAM(Oxidation (M))ETF_		SYVVAM(1)ETF		SYVVAM(210)ETF	0	0	1		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7445678710938	2	531.74425	1061.47395	1.0445	0.00055543	-0.34885	-0.0001855	0.6957	0.00036993	531.743988301191	56.198	1.2592	56.179	55.774	57.033	-0.019077					102	45	4	0	0	0	1.8572E-16	2	13451	13451;13501		205.38	147.91	1	7263600			47502	259	27184	27185	58245;58246	58245		15			-0.05433004656606499
SYVVHTNYD	9	Unmodified	_SYVVHTNYD_					0	0	0		ENSG00000106927|ENST00000265132|AMBP;ENST00000540645.5_1_9:116823569-116838999:-|nuORF;CON__P00978	ENSG00000106927|ENST00000265132|AMBP	ENSG00000106927|ENST00000265132|AMBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.30517578125	2	549.248546	1096.48254	0.46652	0.00025623	-3.7473	-0.0020582	-3.2808	-0.001802	549.7487243438151	66.708	0.59825	66.708	66.423	67.022	0					48	20	3	0	0	0	0.22596	1	16676	16676		21.747	1.293	1	138490		+	47503	2107	27185	27186	58247	58247					-0.06184314695769899
SYVVYLVGCLL	11	Unmodified	_SYVVYLVGCLL_					0	0	0			REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF	REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.91412353515625	3	410.226387	1227.65733	0.082226	3.3731E-05	0.068507	2.8104E-05	0.15073	6.1835E-05	410.2263485795064	49.381	0.49585	49.381	49.267	49.763	0					28	17	2	0	0	0	0.33094	1	11481	11481		7.4771	1.2852	1	164080	+		47504	18285	27186	27187	58248	58248					0.0526096912506091
SYVVYLVGCLL	11	Unmodified	_SYVVYLVGCLL_					0	0	0			REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF	REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	410.226387	1227.65733	0.085739	3.5172E-05	-0.17328	-7.1086E-05	-0.087546	-3.5914E-05	410.22648092194896	49.47	0.53835	49.515	49.238	49.776	0.044891	0.060755	-0.00034596	NaN	7.4771	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168300	+		47505	18285	27186	27187							0.0526096912506091
SYVVYLVGCLL	11	Unmodified	_SYVVYLVGCLL_					0	0	0			REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF	REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	410.226387	1227.65733	-0.0049779	-2.0421E-06	0.30282	0.00012423	0.29785	0.00012218	410.22677845661786	49.434	0.60363	49.466	49.209	49.813	0.032043	0.012082	0.00023997	NaN	7.4771	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209980	+		47506	18285	27186	27187							0.0526096912506091
SYVWDHIF	8	Unmodified	_SYVWDHIF_					0	0	0			REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF	REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7537841796875	2	533.753267	1065.49198	0.65599	0.00035014	0.26271	0.00014022	0.9187	0.00049036	533.7532859305087	83.24	1.5316	83.219	82.252	83.784	-0.020576					140	62	4	0	0	0	0.25055	1	21771	21771		36.466	7.9793	1	3293600	+		47507	15363	27187	27188	58249	58249					-0.03814501619604016
SYWFVHFFF	9	Unmodified	_SYWFVHFFF_					0	0	0			REV__ENST00000309042.11_1_4:57799202-57799397:+|nuORF	REV__ENST00000309042.11_1_4:57799202-57799397:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.2417907714844	3	427.202682	1278.58622	-0.28092	-0.00012001	2.0579	0.00087913	1.777	0.00075912	427.2037072541631	30.576	0.30989	30.603	30.394	30.704	0.027157					29	10	4	0	0	0	0.259	1	5595	5595		5.2969	1.1803	1	145440	+		47508	19885	27188	27189	58250	58250					-0.04193362797445843
SYWFVHFFF	9	Unmodified	_SYWFVHFFF_					0	0	0			REV__ENST00000309042.11_1_4:57799202-57799397:+|nuORF	REV__ENST00000309042.11_1_4:57799202-57799397:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	427.202682	1278.58622	-0.026264	-1.122E-05	1.5226	0.00065046	1.4963	0.00063924	427.20345919979155	30.594	0.39	30.594	30.391	30.781	0	-0.0076109	-0.00040133	NaN	5.2969	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144030	+		47509	19885	27188	27189							-0.04193362797445843
SYYAYVVEL	9	Unmodified	_SYYAYVVEL_					0	0	0		nc|ENSG00000180776|Q5W0Z9-4|ZDHHC20;nc|ENSG00000180776|Q5W0Z9-3|ZDHHC20;ENSG00000180776|ENST00000400590|ZDHHC20;nc|ENSG00000180776|Q5W0Z9-2|ZDHHC20	nc|ENSG00000180776|Q5W0Z9-4|ZDHHC20	nc|ENSG00000180776|Q5W0Z9-4|ZDHHC20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.2244873046875	2	553.773865	1105.53318	0.57222	0.00031688	0.44741	0.00024776	1.0196	0.00056464	553.7740149926726	84.563	0.78573	84.563	84.109	84.895	0					65	29	4	0	0	0	0.25622	1	22091	22091		7.2892	3.3448	1	514010			47510	7200	27189	27190	58251	58251					-0.015367853707630275
SYYKDALRF	9	Unmodified	_SYYKDALRF_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;ENST00000527047.5_1_11:237024-247462:+|nuORF;nc|ENSG00000185627|Q9UNM6-2|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7860107421875	2	581.798206	1161.58186	0.45683	0.00026578	-0.22079	-0.00012846	0.23604	0.00013733	581.7978474902619	44.599	0.3792	44.667	44.488	44.867	0.068569					22	13	2	0	0	0	0.17555	1	9867	9867		27.223	10.11	1	352290			47511	7544	27190	27191	58252	58252					0.007531279889917641
SYYKDALRF	9	Unmodified	_SYYKDALRF_					0	0	0		ENSG00000185627|ENST00000532097|PSMD13;ENST00000527047.5_1_11:237024-247462:+|nuORF;nc|ENSG00000185627|Q9UNM6-2|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	ENSG00000185627|ENST00000532097|PSMD13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	581.798206	1161.58186	0.43733	0.00025444	0.32801	0.00019083	0.76533	0.00044527	581.7983391762364	44.974	0.4366	44.974	44.802	45.238	0	0.15364	8.5129E-05	NaN	27.223	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238120			47512	7544	27190	27191							0.007531279889917641
SYYLARLL	8	Unmodified	_SYYLARLL_					0	0	0		ENSG00000179431|ENST00000317811|FJX1	ENSG00000179431|ENST00000317811|FJX1	ENSG00000179431|ENST00000317811|FJX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2371826171875	2	499.78711	997.559667	0.89236	0.00044599	-1.2161	-0.00060777	-0.32369	-0.00016178	500.28804617595637	56.156	0.24531	56.137	55.942	56.187	-0.019077					11	8	2	0	0	0	0.34046	1	13453	13453		14.582	5.2343	1	241540			47513	7124	27191	27192	58253	58253					0.06078948311221666
SYYMIGEQKF	10	Oxidation (M)	_SYYM(Oxidation (M))IGEQKF_		SYYM(1)IGEQKF		SYYM(220)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.2947387695312	2	641.294639	1280.57472	0.38283	0.0002455	-0.30564	-0.000196	0.077186	4.9499E-05	641.2945214430771	49.989	0.56594	49.989	49.701	50.267	0					79	20	5	0	0	0	1.1970000000000001E-20	2	11568	11520;11568		218.2	190.57	1	3272800			47514	6107	27192	27193	58254;58255	58255		715			-0.05433972673745302
SYYMIGEQKF	10	Oxidation (M)	_SYYM(Oxidation (M))IGEQKF_		SYYM(1)IGEQKF		SYYM(250)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.2947998046875	2	641.294639	1280.57472	0.69638	0.00044659	-0.39973	-0.00025635	0.29665	0.00019024	641.2943059337499	49.95	0.57318	49.995	49.695	50.268	0.044891					72	21	4	0	0	0	1.7954E-38	2	11548	11503;11548		251.75	221.04	1	3439900			47515	6107	27192	27193	58256;58257	58257		715			-0.05433972673745302
SYYMIGEQKF	10	Oxidation (M)	_SYYM(Oxidation (M))IGEQKF_		SYYM(1)IGEQKF		SYYM(250)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.294677734375	2	641.294639	1280.57472	0.72457	0.00046466	-0.31324	-0.00020088	0.41133	0.00026378	641.2942994844177	50.001	0.61147	50.022	49.67	50.281	0.020691					69	22	4	0	0	0	1.7954E-38	2	11549	11500;11549		251.75	224.12	1	2990200			47516	6107	27192	27193	58258;58259	58259		715			-0.05433972673745302
SYYTSNTALS	10	Unmodified	_SYYTSNTALS_					0	0	0			REV__ENSG00000146950|ENST00000380913|SHROOM2	REV__ENSG00000146950|ENST00000380913|SHROOM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.2501831054688	2	553.753661	1105.49277	0.53298	0.00029514	-2.3726	-0.0013138	-1.8396	-0.0010187	553.7530118816953	85.933	1.0867	85.933	85.484	86.571	0					67	42	2	0	0	0	0.35231	1	22727	22727		12.241	2.1667	1	796080	+		47517	16366	27193	27194	58260	58260					-0.055757517611937146
SYYYPSGLL	9	Unmodified	_SYYYPSGLL_					0	0	0			REV__nc|ENSG00000196092|Q02548-10|PAX5	REV__nc|ENSG00000196092|Q02548-10|PAX5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8171997070312	2	531.760758	1061.50696	0.7089	0.00037697	-3.3634	-0.0017885	-2.6545	-0.0014115	531.7593278270974	79.157	0.25481	79.129	79.05	79.305	-0.028931					11	9	2	0	0	0	0.25066	1	20486	20486		7.2892	0.56607	1	81930	+		47518	18615	27194	27195	58261	58261					-0.021330545422415526
SYYYPYYCL	9	Unmodified	_SYYYPYYCL_					0	0	0		ENSG00000109705|ENST00000382438|NKX3-2	ENSG00000109705|ENST00000382438|NKX3-2	ENSG00000109705|ENST00000382438|NKX3-2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.568115234375	3	412.175692	1233.50525	0.20769	8.5604E-05	-1.9818	-0.00081687	-1.7742	-0.00073127	412.5092122463923	47.537	0.13775	47.537	47.44	47.578	0					6	4	2	0	0	0	0.26099	1	10798	10798		2.9952	1.9238	1	51973			47519	2267	27195	27196	58262	58262					-0.10216431622507116
TAADTAAQI	9	Unmodified	_TAADTAAQI_					0	0	0		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENST00000494367.1_1_6:29974674-29976922:+|nuORF;ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204525|P10321-2|HLA-C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.5904846191406	2	431.219257	860.423961	0.20372	8.7849E-05	0.60721	0.00026184	0.81093	0.00034969	431.2195389504135	32.449	1.0713	32.504	32.157	33.228	0.055309					87	38	3	0	0	0	0.20167	1	6279	6279		29.082	2.1979	1	1575600			47520	8234;8488;8246	27196	27197	58263	58263					-0.011833712702468802
TAAHVKKLS	9	Unmodified	_TAAHVKKLS_					0	0	0		ENST00000514208.5_1_X:148622629-148627018:+|nuORF	ENST00000514208.5_1_X:148622629-148627018:+|nuORF	ENST00000514208.5_1_X:148622629-148627018:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.3004455566406	2	477.790184	953.565815	0.017552	8.386E-06	-0.068365	-3.2664E-05	-0.050814	-2.4278E-05	477.79014823289776	23.75	0.42882	23.75	23.569	23.998	0					21	14	2	0	0	0	0.2451	1	3598	3598		15.847	2.3393	1	59472			47521	11413	27197	27198	58264	58264					0.08717466542748298
TAAHVKKLS	9	Unmodified	_TAAHVKKLS_					0	0	0		ENST00000514208.5_1_X:148622629-148627018:+|nuORF	ENST00000514208.5_1_X:148622629-148627018:+|nuORF	ENST00000514208.5_1_X:148622629-148627018:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	477.790184	953.565815	0.34216	0.00016348	-0.85553	-0.00040876	-0.51337	-0.00024528	477.78973380501185	23.931	0.34171	23.892	23.651	23.993	-0.038927	0.075717	-0.00052805	NaN	10.824	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68060			47522	11413	27197	27198							0.08717466542748298
TAALNIESK	9	Unmodified	_TAALNIESK_					0	0	0			REV__ENSG00000141579|ENST00000269394|ZNF750	REV__ENSG00000141579|ENST00000269394|ZNF750	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7634582519531	2	473.763832	945.513111	0.058244	2.7594E-05	0.11176	5.2947E-05	0.17	8.0541E-05	473.7638810669846	21.949	0.99347	21.949	21.601	22.594	0					91	35	4	0	0	0	0.12642	1	2939	2939		34.402	0	1	1113700	+		47523	16086	27198	27199	58265	58265					0.03817463689279066
TAALSLSSTY	10	Unmodified	_TAALSLSSTY_					0	0	0		ENSG00000047597|ENST00000378616|XK	ENSG00000047597|ENST00000378616|XK	ENSG00000047597|ENST00000378616|XK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8113098144531	2	507.261122	1012.50769	0.59129	0.00029994	-0.96659	-0.00049031	-0.3753	-0.00019037	507.76251398378713	47.358	0.62916	47.358	47.053	47.682	0					42	22	2	0	0	0	0.28434	1	10707	10707		19.257	9.9096	1	352120			47524	634	27199	27200	58266	58266					0.0019374010679484854
TAALSLSSTY	10	Unmodified	_TAALSLSSTY_					0	0	0		ENSG00000047597|ENST00000378616|XK	ENSG00000047597|ENST00000378616|XK	ENSG00000047597|ENST00000378616|XK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.8113708496094	2	507.261122	1012.50769	0.31293	0.00015873	-0.82421	-0.00041809	-0.51128	-0.00025935	507.7627548957519	47.218	0.68946	47.271	47.038	47.727	0.052574					44	25	2	0	0	0	0.28434	1	10691	10691		25.399	10.818	1	390670			47525	634	27199	27200	58267	58267					0.0019374010679484854
TAALSLSSTY	10	Unmodified	_TAALSLSSTY_					0	0	0		ENSG00000047597|ENST00000378616|XK	ENSG00000047597|ENST00000378616|XK	ENSG00000047597|ENST00000378616|XK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.8113098144531	2	507.261122	1012.50769	0.86677	0.00043968	-1.1607	-0.00058876	-0.29389	-0.00014908	507.7623982357338	47.353	0.60904	47.408	47.093	47.702	0.054375					40	22	2	0	0	0	0.25875	1	10684	10684		25.399	10.561	1	484580			47526	634	27199	27200	58268	58268					0.0019374010679484854
TAALTPWW	8	Unmodified	_TAALTPWW_					0	0	0			REV__ENST00000468062.5_1_11:64569539-64570065:-|nuORF	REV__ENST00000468062.5_1_11:64569539-64570065:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7634582519531	2	473.245078	944.475603	0.10804	5.1128E-05	-0.48826	-0.00023107	-0.38022	-0.00017994	473.24481348887906	21.656	0.32871	21.656	21.517	21.845	0					14	11	2	0	0	0	0.31375	1	2939	2939		26.341	9.399	1	26266	+		47527	21314	27200	27201	58269	58269					0.0011441721431992846
TAALTPWW	8	Unmodified	_TAALTPWW_					0	0	0			REV__ENST00000468062.5_1_11:64569539-64570065:-|nuORF	REV__ENST00000468062.5_1_11:64569539-64570065:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	473.245078	944.475603	0.27908	0.00013208	-0.99643	-0.00047156	-0.71735	-0.00033948	473.2440535281675	21.774	0.18639	21.674	21.557	21.744	-0.10034	0.008698	-0.00042562	NaN	26.341	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29357	+		47528	21314	27200	27201							0.0011441721431992846
TAANQYIL	8	Unmodified	_TAANQYIL_					0	0	0			REV__nc|ENSG00000198911|Q12772-2|SREBF2	REV__nc|ENSG00000198911|Q12772-2|SREBF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.7877197265625	2	447.239993	892.465432	0.3559	0.00015917	-1.4944	-0.00066834	-1.1385	-0.00050917	447.2393343054354	36.038	0.34693	36.038	35.882	36.229	0					19	12	2	0	0	0	0.33993	1	7248	7248		11.64	0.81637	1	84698	+		47529	18888	27201	27202	58270	58270					0.01489809489100935
TAAPGAVHP	9	Unmodified	_TAAPGAVHP_					0	0	0		ENST00000358729.8_1_1:110163725-110168306:+|nuORF	ENST00000358729.8_1_1:110163725-110168306:+|nuORF	ENST00000358729.8_1_1:110163725-110168306:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2324523925781	2	410.719227	819.423902	-0.023065	-9.4733E-06	0.074672	3.0669E-05	0.051606	2.1196E-05	410.7192335684691	26.187	0.70039	26.149	25.902	26.603	-0.038671					50	24	3	0	0	0	0.24739	1	4376	4376		8.5933	0	1	261910			47530	9653	27202	27203	58271	58271					0.006966735204287033
TAAPSSAVAK	10	Unmodified	_TAAPSSAVAK_					0	0	0			REV__nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	REV__nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7506408691406	2	451.750724	901.486896	0.0011064	4.9984E-07	0.059068	2.6684E-05	0.060174	2.7184E-05	451.750655525641	22.491	0.94551	22.491	22.252	23.197	0					72	32	3	0	0	0	0.3001	1	3182	3182		20.415	1.0526	1	355680	+		47531	13833	27203	27204	58272	58272					0.03221194517800541
TAAPSSAVAK	10	Unmodified	_TAAPSSAVAK_					0	0	0			REV__nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	REV__nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7507019042969	2	451.750724	901.486896	-0.0043342	-1.958E-06	-0.025174	-1.1373E-05	-0.029509	-1.3331E-05	451.75066585338016	22.624	0.89283	22.537	22.245	23.138	-0.08761					69	31	3	0	0	0	0.21126	1	3222	3222		31.268	5.869	1	417350	+		47532	13833	27203	27204	58273	58273					0.03221194517800541
TAAPSSAVAK	10	Unmodified	_TAAPSSAVAK_					0	0	0			REV__nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	REV__nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.75067138671875	2	451.750724	901.486896	0.019757	8.9251E-06	-0.11691	-5.2813E-05	-0.09715	-4.3887E-05	451.7506143601039	22.579	0.84619	22.534	22.238	23.084	-0.044865					72	29	3	0	0	0	0.30872	1	3208	3208		19.362	4.9566	1	387030	+		47533	13833	27203	27204	58274	58274					0.03221194517800541
TAAQCLWVYLR	11	Unmodified	_TAAQCLWVYLR_					0	0	0		nc|ENSG00000075399|Q9Y2B5-2|VPS9D1	nc|ENSG00000075399|Q9Y2B5-2|VPS9D1	nc|ENSG00000075399|Q9Y2B5-2|VPS9D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.2772521972656	3	441.900786	1322.68053	-0.17631	-7.7914E-05	-0.94156	-0.00041607	-1.1179	-0.00049399	442.2346326856103	12.467	0.21801	12.467	12.364	12.582	0					9	6	2	0	0	0	0.33346	1	155	155		0.50596	0.23694	1	14300			47534	12587	27204	27205	58275	58275					0.0320940796236755
TAARHKKA	8	Unmodified	_TAARHKKA_					0	0	0			REV__ENSG00000113593|ENST00000261308|PPWD1	REV__ENSG00000113593|ENST00000261308|PPWD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.91009521484375	2	441.767043	881.519533	-0.5402	-0.00023864	0.27796	0.00012279	-0.26224	-0.00011585	441.76713674463053	35.2	0.30017	35.277	35.167	35.467	0.077377					11	10	2	0	0	0	0.34337	1	6986	6986		5.2307	0	1	42442	+		47535	14815	27205	27206	58276	58276					0.07403446431317207
TAARRPVV	8	Unmodified	_TAARRPVV_					0	0	0		ENST00000465508.5_1_1:6695257-6695521:-|nuORF	ENST00000465508.5_1_1:6695257-6695521:-|nuORF	ENST00000465508.5_1_1:6695257-6695521:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.26922607421875	2	435.269419	868.524284	-0.20024	-8.7156E-05	-0.25395	-0.00011053	-0.45418	-0.00019769	435.2692652019156	16.919	1.2524	16.804	16.476	17.729	-0.11434					126	44	4	0	0	0	0.3671	1	1489	1489		23.148	0.41214	1	2575400			47536	10798	27206	27207	58277	58277					0.08476330574092117
TAASEPRPL	9	Unmodified	_TAASEPRPL_					0	0	0		nc|nan|Q9H425-2|C1orf198;nc|nan|Q9H425-3|C1orf198;ENSG00000119280|ENST00000366663|C1orf198	nc|nan|Q9H425-2|C1orf198	nc|nan|Q9H425-2|C1orf198	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.8132629394531	2	471.256174	940.497795	-0.037841	-1.7833E-05	0.48339	0.0002278	0.44555	0.00020997	471.2564275391539	33.289	0.19081	33.289	33.174	33.365	0					9	6	2	0	0	0	0.25066	1	6430	6430		7.2892	0	1	63997			47537	2866	27207	27208	58278	58278					0.025165968920987325
TAASPQPPQPL	11	Unmodified	_TAASPQPPQPL_					0	0	0			REV__ENSG00000221944|ENST00000408957|TIGD1	REV__ENSG00000221944|ENST00000408957|TIGD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.7416381835938	2	553.795663	1105.57677	0.33591	0.00018603	-0.90609	-0.00050179	-0.57018	-0.00031576	553.7952116441794	39.813	0.3857	39.912	39.788	40.173	0.099407					23	13	2	0	0	0	0.31739	1	8446	8446		21.59	3.2171	1	160670	+		47538	19101	27208	27209	58279	58279					0.028208241263882883
TAATTPPPAS	10	Unmodified	_TAATTPPPAS_					0	0	0			REV__nc|ENSG00000126883|P35658-2|NUP214	REV__nc|ENSG00000126883|P35658-2|NUP214	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.23516845703125	2	457.234907	912.455261	0.013602	6.2194E-06	0.76715	0.00035077	0.78076	0.00035699	457.2349245584988	17.864	0.61443	17.864	17.628	18.243	0					54	20	4	0	0	0	0.29589	1	1736	1736		22.736	0	1	149170	+		47539	15326	27209	27210	58280	58280					-0.004467982361461509
TAATTPPPAS	10	Unmodified	_TAATTPPPAS_					0	0	0			REV__nc|ENSG00000126883|P35658-2|NUP214	REV__nc|ENSG00000126883|P35658-2|NUP214	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2349853515625	2	457.234907	912.455261	-0.051659	-2.362E-05	0.52094	0.00023819	0.46929	0.00021457	457.23491016853035	18.019	0.69025	17.96	17.767	18.458	-0.058805					52	24	3	0	0	0	0.3144	1	1790	1790		13.042	0	1	157520	+		47540	15326	27209	27210	58281	58281					-0.004467982361461509
TAAVATRK	8	Unmodified	_TAAVATRK_					0	0	0		ENSG00000188807|ENST00000340381|TMEM201;nc|ENSG00000188807|Q5SNT2-2|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	ENSG00000188807|ENST00000340381|TMEM201	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.91046142578125	2	409.248152	816.481751	-0.082634	-3.3818E-05	-0.35598	-0.00014568	-0.43861	-0.0001795	409.2479726224953	21.737	0.2686	21.737	21.654	21.922	0					13	9	2	0	0	0	0.34337	1	2931	2931		5.2307	0	1	34407			47541	7776	27210	27211	58282	58282					0.06616935445845229
TADIRIEE	8	Unmodified	_TADIRIEE_					0	0	0			REV__ENSG00000100023|ENST00000398831|PPIL2	REV__ENSG00000100023|ENST00000398831|PPIL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7456359863281	2	473.745639	945.476725	0.018448	8.7398E-06	0.14134	6.6959E-05	0.15979	7.5698E-05	473.74561035013784	16.558	0.91294	16.558	16.184	17.097	0					59	31	3	0	0	0	0.1951	1	1376	1376		43.858	8.9262	1	425790	+		47542	14151	27211	27212	58283	58283					0.001805867925554594
TADIRIEE	8	Unmodified	_TADIRIEE_					0	0	0			REV__ENSG00000100023|ENST00000398831|PPIL2	REV__ENSG00000100023|ENST00000398831|PPIL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7458190917969	2	473.745639	945.476725	0.02207	1.0456E-05	0.32026	0.00015172	0.34233	0.00016218	473.7456977509054	16.639	0.91779	16.525	16.166	17.084	-0.11434					71	32	4	0	0	0	0.30157	1	1366	1366		30.637	2.142	1	398320	+		47543	14151	27211	27212	58284	58284					0.001805867925554594
TADLERQL	8	Unmodified	_TADLERQL_					0	0	0			REV__nc|ENSG00000257923|P39880-3|CUX1	REV__nc|ENSG00000257923|P39880-3|CUX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.74591064453125	2	473.253631	944.49271	0.244	0.00011547	-0.35174	-0.00016646	-0.10774	-5.0991E-05	473.2533624972039	16.761	0.72594	16.699	16.351	17.077	-0.062532					54	25	3	0	0	0	0.17761	1	1396	1396		46.921	1.181	1	235090	+		47544	23221	27212	27213	58285	58285					0.018242930294718462
TAEEGLRRYK	10	Unmodified	_TAEEGLRRYK_					0	0	0			REV__ENSG00000027644|ENST00000368195|INSRR	REV__ENSG00000027644|ENST00000368195|INSRR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5643615722656	3	408.222805	1221.64658	0.42911	0.00017517	-0.47606	-0.00019434	-0.046952	-1.9167E-05	408.5561895932753	36.335	0.13279	36.421	36.371	36.503	0.08625					6	4	2	0	0	0	0.31847	1	7375	7375		1.7423	0	1	67111	+		47545	13484	27213	27214	58286	58286					0.044627027949900366
TAEIKRKCRQ	10	Unmodified	_TAEIKRKCRQ_					0	0	0			REV__nc|ENSG00000078674|Q15154-4|PCM1	REV__nc|ENSG00000078674|Q15154-4|PCM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.9151611328125	3	411.567918	1231.68192	0.14558	5.9915E-05	0.0036285	1.4934E-06	0.14921	6.1408E-05	411.5679177940148	49.341	0.7322	49.386	48.989	49.721	0.044891					33	26	2	0	0	0	0.31994	1	11247	11247		3.0723	0	1	122750	+		47546	13859	27214	27215	58287	58287					0.0753504205115405
TAEILSRL	8	Unmodified	_TAEILSRL_					0	0	0		ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	ENSG00000178764|ENST00000314393|ZHX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.5541687011719	2	451.768917	901.523281	0.29423	0.00013292	-0.49728	-0.00022465	-0.20305	-9.1733E-05	451.768681444141	48.756	0.37862	48.756	48.448	48.827	0					16	13	2	0	0	0	0.23527	1	11180	11180		56.177	2.3442	1	459970			47547	7076	27215	27216	58288	58288					0.06858071414524147
TAEKRTYFLPS	11	Unmodified	_TAEKRTYFLPS_					0	0	0		ENST00000547260.5_1_12:49168067-49168277:-|nuORF	ENST00000547260.5_1_12:49168067-49168277:-|nuORF	ENST00000547260.5_1_12:49168067-49168277:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.246337890625	3	438.23471	1311.6823	0.23578	0.00010333	-0.35069	-0.00015368	-0.11491	-5.0358E-05	438.23536029546244	20.885	0.64843	20.832	20.613	21.261	-0.05291					45	22	3	0	0	0	0.47545	1	2757	2757		1.3296	0	1	131190			47548	11765	27216	27217	58289	58289					0.0389274025199029
TAELAEARKE	10	Unmodified	_TAELAEARKE_					0	0	0			REV__ENST00000416321.5_1_12:100646057-100649830:-|nuORF	REV__ENST00000416321.5_1_12:100646057-100649830:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.8246459960938	2	559.296027	1116.5775	-0.027728	-1.5508E-05	0.69847	0.00039065	0.67074	0.00037514	559.2963399332006	18.292	0.47864	18.233	18.031	18.509	-0.058174					21	16	2	0	0	0	0.31958	1	1930	1930		5.2969	0	1	47707	+		47549	17297	27217	27218	58290	58290					0.023876187754240163
TAEPFFEYKI	10	Unmodified	_TAEPFFEYKI_					0	0	0			REV__nc|ENSG00000145868|Q6PIJ6-3|FBXO38	REV__nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.7399597167969	3	415.544773	1243.61249	0.21812	9.0639E-05	0.65594	0.00027257	0.87406	0.00036321	415.54587086163446	21.596	0.31761	21.547	21.316	21.633	-0.049377					14	10	2	0	0	0	0.32033	1	2872	2872		1.7423	0.41263	1	23251	+		47550	16315	27218	27219	58291	58291					0.0004286158336981316
TAEQVLNAECF	11	Unmodified	_TAEQVLNAECF_					0	0	0		nc|ENSG00000196335|Q9BXU1-3|STK31;nc|ENSG00000196335|Q9BXU1-2|STK31;ENSG00000196335|ENST00000355870|STK31	nc|ENSG00000196335|Q9BXU1-3|STK31	nc|ENSG00000196335|Q9BXU1-3|STK31	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5145263671875	3	408.857023	1223.54924	-1.238	-0.00050616	2.5417	0.0010392	1.3038	0.00053305	408.85805507937835	35.038	0.46269	35.038	34.839	35.302	0					23	16	2	0	0	0	0.33037	1	7026	7026		2.084	0	1	133440			47551	7848	27219	27220	58292	58292					-0.05359447196178735
TAERLLEH	8	Unmodified	_TAERLLEH_					0	0	0			REV__ENSG00000142513|ENST00000270593|ACP4	REV__ENSG00000142513|ENST00000270593|ACP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.77423095703125	2	484.761623	967.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.288	1	40.288	39.788	40.788	0								0	0	0	0.22487	1	8578	8578		40.449	14.107	1		+		47552	16122	27220	27221	58293	58293					0.02363999266378869
TAERLLEH	8	Unmodified	_TAERLLEH_					0	0	0			REV__ENSG00000142513|ENST00000270593|ACP4	REV__ENSG00000142513|ENST00000270593|ACP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.7741394042969	2	484.761623	967.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.448	1	40.448	39.948	40.948	0								0	0	0	0.27914	1	8627	8627		32.117	5.7757	1		+		47553	16122	27220	27221	58294	58294					0.02363999266378869
TAEVISQPMEE	11	Unmodified	_TAEVISQPMEE_					0	0	0			REV__ENSG00000105364|ENST00000253099|MRPL4	REV__ENSG00000105364|ENST00000253099|MRPL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2276611328125	3	411.860433	1232.55947	0.097762	4.0264E-05	4.331	0.0017838	4.4288	0.001824	411.86186080393634	24.278	0.34283	24.239	24.049	24.392	-0.038927					15	11	2	0	0	0	0.33175	1	3669	3669		1.0136	0.38675	1	29319	+		47554	14452	27221	27222	58295	58295					-0.047508842616025504
TAEVTFLKQ	9	Unmodified	_TAEVTFLKQ_					0	0	0			REV__nc|ENSG00000161270|O60500-2|NPHS1	REV__nc|ENSG00000161270|O60500-2|NPHS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2792358398438	2	518.787307	1035.56006	0.9914	0.00051432	0.070772	3.6716E-05	1.0622	0.00055104	518.7873184573664	50.449	0.48839	50.469	50.252	50.74	0.020691					27	17	2	0	0	0	0.10197	1	11692	11692		37.974	11.706	1	211580	+		47555	16937	27222	27223	58296	58296					0.04370323240414109
TAEVTFLKQ	9	Unmodified	_TAEVTFLKQ_					0	0	0			REV__nc|ENSG00000161270|O60500-2|NPHS1	REV__nc|ENSG00000161270|O60500-2|NPHS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	518.787307	1035.56006	0.9914	0.00051432	0.070772	3.6716E-05	1.0622	0.00055104	518.7873184573664	50.449	0.48839	50.469	50.252	50.74	0.020691	0.14249	0.00019148	NaN	37.974	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211580	+		47556	16937	27222	27223							0.04370323240414109
TAFENAYLK	9	Unmodified	_TAFENAYLK_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7716674804688	2	528.771657	1055.52876	0.36034	0.00019054	0.20026	0.00010589	0.56061	0.00029643	528.7716794229382	42.719	0.82201	42.719	42.435	43.257	0					69	29	4	0	0	0	0.003673	1	9331	9331		96.936	56.978	1	1056100			47557	62	27223	27224	58297	58297					0.00321750206330762
TAFENAYLK	9	Unmodified	_TAFENAYLK_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7716674804688	2	528.771657	1055.52876	0.3695	0.00019538	-0.45107	-0.00023852	-0.08157	-4.3132E-05	528.7715729600878	42.382	0.91214	42.468	42.009	42.922	0.085201					60	32	3	0	0	0	0.022205	1	9234	9234		63.227	39.207	1	1057900			47558	62	27223	27224	58298	58298					0.00321750206330762
TAFENAYLK	9	Unmodified	_TAFENAYLK_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ATM|p.Q2066Rfs*16|1|0.31|ENSG00000149311|chr11:108316109-108316109|T/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7715454101562	2	528.771657	1055.52876	0.5108	0.0002701	-0.31323	-0.00016563	0.19757	0.00010447	528.7715341757814	42.27	0.78354	42.361	42.095	42.879	0.091362					58	27	3	0	0	0	0.053988	2	9193	9193;9220		51.415	33.269	1	866110			47559	62	27223	27224	58299;58300	58299					0.00321750206330762
TAFHPGRQ	8	Unmodified	_TAFHPGRQ_					0	0	0		AluSx_dup33406|chr5:139541906-139542203:+|1.496873700043059|0.0612481395291933|4.61|519.0|8|2|sense	AluSx_dup33406|chr5:139541906-139542203:+|1.496873700043059|0.0612481395291933|4.61|519.0|8|2|sense	AluSx_dup33406|chr5:139541906-139542203:+|1.496873700043059|0.0612481395291933|4.61|519.0|8|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7665100097656	2	457.235576	912.456599	-0.064289	-2.9395E-05	-1.6962	-0.00077557	-1.7605	-0.00080496	457.234628835292	16.504	0.34069	16.39	16.219	16.56	-0.11434					20	11	2	0	0	0	0.34247	1	1342	1342		8.5933	0	1	33292			47560	37	27224	27225	58301	58301					-0.003131193567128321
TAFNSNRSEAK	11	Unmodified	_TAFNSNRSEAK_					0	0	0			REV__ENST00000417517.1_1_1:43357732-43357957:-|nuORF	REV__ENST00000417517.1_1_1:43357732-43357957:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.22637939453125	3	408.870431	1223.58946	-0.38388	-0.00015696	-1.0905	-0.00044589	-1.4744	-0.00060285	408.86976750208197	25.202	0.42544	25.17	24.922	25.347	-0.03141					20	14	2	0	0	0	0.33094	1	3939	3939		4.7159	0.83959	1	24589	+		47561	20830	27225	27226	58302	58302					-0.013387644813747102
TAFQVAII	8	Unmodified	_TAFQVAII_					0	0	0		ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3;ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.7550964355469	2	431.755278	861.496004	0.05677	2.4511E-05	1.4304	0.00061757	1.4871	0.00064208	431.755161793254	72.819	1.9593	72.79	71.923	73.882	-0.029305					100	70	2	0	0	0	0.28696	1	18634	18634		32.305	0	1	1018100			47562	8599	27226	27227	58303	58303					0.05971587874148554
TAFQVKVK	8	Unmodified	_TAFQVKVK_					0	0	0		ENSG00000018236|ENST00000551295|CNTN1;nc|ENSG00000018236|Q12860-2|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.7582702636719	2	460.781828	919.549102	0.15142	6.977E-05	0.19199	8.8465E-05	0.3434	0.00015823	460.7817548640377	36.095	0.42625	36.095	35.856	36.282	0					32	15	3	0	0	0	0.3366	1	7273	7273		12.532	0	1	334040			47563	492	27227	27228	58304	58304					0.08610965656805547
TAFRNKSMLFK	11	Oxidation (M)	_TAFRNKSM(Oxidation (M))LFK_		TAFRNKSM(1)LFK		TAFRNKSM(57)LFK	0	0	1		ENSG00000183648|ENST00000605997|NDUFB1;nc|ENSG00000183648|O75438-2|NDUFB1	ENSG00000183648|ENST00000605997|NDUFB1	ENSG00000183648|ENST00000605997|NDUFB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.57965087890625	3	453.579823	1357.71764	-0.0024403	-1.1069E-06	-0.22721	-0.00010306	-0.22965	-0.00010416	453.5797150833894	26.008	0.81716	26.008	25.769	26.586	0					66	28	3	0	0	0	0.035355	1	4207	4207		57.477	48.725	1	381430			47564	7385	27228	27229	58305	58305		818			0.05309079508151626
TAFRNKSMLFK	11	Oxidation (M)	_TAFRNKSM(Oxidation (M))LFK_		TAFRNKSM(1)LFK		TAFRNKSM(48)LFK	0	0	1		ENSG00000183648|ENST00000605997|NDUFB1;nc|ENSG00000183648|O75438-2|NDUFB1	ENSG00000183648|ENST00000605997|NDUFB1	ENSG00000183648|ENST00000605997|NDUFB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.5799560546875	3	453.579823	1357.71764	-0.017926	-8.1311E-06	-0.35088	-0.00015915	-0.36881	-0.00016728	453.5797348921564	26.044	0.8252	26.005	25.75	26.575	-0.038671					75	28	4	0	0	0	0.069084	1	4226	4226		47.724	34.868	1	426700			47565	7385	27228	27229	58306	58306		818			0.05309079508151626
TAFRNKSMLFK	11	Oxidation (M)	_TAFRNKSM(Oxidation (M))LFK_		TAFRNKSM(1)LFK		TAFRNKSM(58)LFK	0	0	1		ENSG00000183648|ENST00000605997|NDUFB1;nc|ENSG00000183648|O75438-2|NDUFB1	ENSG00000183648|ENST00000605997|NDUFB1	ENSG00000183648|ENST00000605997|NDUFB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.57977294921875	3	453.579823	1357.71764	0.12869	5.8372E-05	-0.55797	-0.00025308	-0.42928	-0.00019471	453.5796303100094	26.145	0.75439	26.123	25.802	26.556	-0.022238					72	26	4	0	0	0	0.033944	1	4257	4257		57.885	46.819	1	433560			47566	7385	27228	27229	58307	58307		818			0.05309079508151626
TAFRTVEI	8	Unmodified	_TAFRTVEI_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7611999511719	2	468.761092	935.507631	0.20259	9.4965E-05	0.0074347	3.4851E-06	0.21002	9.845E-05	468.76108132944705	44.761	0.66271	44.83	44.599	45.261	0.068569					49	23	3	0	0	0	0.17289	1	9976	9976		47.749	5.6541	1	680450			47567	1822	27229	27230	58308	58308					0.03729784897484478
TAFRTVEI	8	Unmodified	_TAFRTVEI_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7613220214844	2	468.761092	935.507631	0.39433	0.00018485	-0.09794	-4.591E-05	0.29639	0.00013894	468.7609563085703	44.792	0.70085	44.867	44.583	45.284	0.075047					52	25	3	0	0	0	0.1286	1	9956	9956		55.503	13.408	1	589020			47568	1822	27229	27230	58309	58309					0.03729784897484478
TAFRTVEI	8	Unmodified	_TAFRTVEI_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	468.761092	935.507631	0.20877	9.7862E-05	0.044587	2.0901E-05	0.25335	0.00011876	468.7609828210606	44.998	0.7682	44.998	44.684	45.452	0	0.099928	6.8907E-05	NaN	55.503	46	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	459640			47569	1822	27229	27230							0.03729784897484478
TAFSRLILI	9	Unmodified	_TAFSRLILI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3238525390625	2	517.32386	1032.63317	0.38295	0.00019811	0.16768	8.6747E-05	0.55063	0.00028486	517.323939444194	70.769	0.505	70.769	70.484	70.989	0					31	17	2	0	0	0	0.21026	1	17954	17954		28.495	3.0952	1	368470			47570	6781	27230	27231	58310	58310					0.11815496753729349
TAFSRLILI	9	Unmodified	_TAFSRLILI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	517.32386	1032.63317	0.3061	0.00015835	0.25629	0.00013259	0.56239	0.00029094	517.3239945760897	70.66	0.47039	70.721	70.546	71.017	0.060783	-0.034067	0.00011663	NaN	28.495	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338550			47571	6781	27230	27231							0.11815496753729349
TAFSRLILI	9	Unmodified	_TAFSRLILI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	517.32386	1032.63317	0.35025	0.00018119	0.039776	2.0577E-05	0.39002	0.00020177	517.3238674020644	70.8	0.47757	70.775	70.521	70.999	-0.024864	0.019932	-0.00010739	NaN	28.495	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334230			47572	6781	27230	27231							0.11815496753729349
TAFSVARQ	8	Unmodified	_TAFSVARQ_					0	0	0			REV__ENST00000397981.7_1_19:7977316-7977859:+|nuORF	REV__ENST00000397981.7_1_19:7977316-7977859:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.8862609863281	2	440.237784	878.461016	-0.21189	-9.328E-05	0.45569	0.00020061	0.2438	0.00010733	440.23791428494616	13.702	0.54612	13.702	13.509	14.055	0					32	18	3	0	0	0	0.34218	1	499	499		5.2307	0	1	114020	+		47573	20679	27231	27232	58311	58311					0.01692345066192047
TAFTKHPRFW	10	Unmodified	_TAFTKHPRFW_					0	0	0		ENST00000325888.12_1_7:128497387-128498124:+|nuORF	ENST00000325888.12_1_7:128497387-128498124:+|nuORF	ENST00000325888.12_1_7:128497387-128498124:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.888427734375	3	430.896252	1289.66693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.742	1	22.655	22.155	23.155	-0.087608								0	0	0	0.3726	1	3240	3240		2.8433	0.3448	1				47574	9410	27232	27233	58312	58312					0.033679182454534384
TAGLPQQNKVL	11	Unmodified	_TAGLPQQNKVL_					0	0	0			REV__MPP4|p.N441Kfs*2|1|0.06|ENSG00000082126|chr2:201654898-201654899|-/A|frameshift_variant	REV__MPP4|p.N441Kfs*2|1|0.06|ENSG00000082126|chr2:201654898-201654899|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.3406372070312	2	584.837862	1167.66117	0.51711	0.00030243	0.1566	9.1588E-05	0.67372	0.00039402	584.8382402455954	45.634	0.86949	45.699	45.358	46.227	0.065048					91	31	4	0	0	0	0.25499	1	10292	10292		26.268	3.6101	1	2320900	+		47575	13916	27233	27234	58313	58313					0.08404774943142002
TAGTTVQNI	9	Unmodified	_TAGTTVQNI_					0	0	0		ENSG00000175229|ENST00000312006|GAL3ST3	ENSG00000175229|ENST00000312006|GAL3ST3	ENSG00000175229|ENST00000312006|GAL3ST3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2538146972656	2	452.740357	903.46616	-0.12756	-5.7752E-05	3.33	0.0015076	3.2025	0.0014499	452.74074633869543	14.869	0.22176	14.869	14.759	14.981	0					9	7	2	0	0	0	0.25431	1	832	832		9.3831	3.6227	1	20074			47576	6851	27234	27235	58314	58314					0.010566041381480318
TAHLCTAKS	9	Unmodified	_TAHLCTAKS_					0	0	0		nc|ENSG00000141562|Q9UHQ1-4|NARF;nc|ENSG00000141562|Q9UHQ1-3|NARF;ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;ENST00000581795.5_1_17:80426730-80441656:+|nuORF;ENST00000578082.5_1_17:80416679-80436800:+|nuORF;ENST00000577812.5_1_17:80416679-80441656:+|nuORF	nc|ENSG00000141562|Q9UHQ1-4|NARF	nc|ENSG00000141562|Q9UHQ1-4|NARF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.23883056640625	2	466.236927	930.459301	0.0084126	3.9223E-06	0.090137	4.2025E-05	0.098549	4.5947E-05	466.23686699216563	20.197	1.5726	20.197	19.655	21.228	0					133	56	3	0	0	0	0.25112	1	2656	2656		16.149	2.2431	1	1497100			47577	4394	27235	27236	58315	58315					-0.008710320140835393
TAHLPHPEG	9	Unmodified	_TAHLPHPEG_					0	0	0		ENST00000379660.4_1_6:8434627-8435642:-|nuORF	ENST00000379660.4_1_6:8434627-8435642:-|nuORF	ENST00000379660.4_1_6:8434627-8435642:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.76995849609375	2	479.740691	957.466829	-0.12175	-5.8409E-05	0.18492	8.8715E-05	0.063173	3.0307E-05	479.7407158210253	13.625	0.35433	13.526	13.389	13.743	-0.099291					21	12	3	0	0	0	0.26168	1	533	533		1.8442	1.0506	1	36120			47578	9974	27236	27237	58316	58316					-0.013605564221506938
TAHLPHPEG	9	Unmodified	_TAHLPHPEG_					0	0	0		ENST00000379660.4_1_6:8434627-8435642:-|nuORF	ENST00000379660.4_1_6:8434627-8435642:-|nuORF	ENST00000379660.4_1_6:8434627-8435642:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	479.740691	957.466829	-0.15018	-7.2047E-05	0.18503	8.8765E-05	0.034848	1.6718E-05	479.7408110959592	13.506	0.28631	13.506	13.427	13.714	0	-0.01728	7.1939E-06	NaN	1.8442	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42664			47579	9974	27236	27237							-0.013605564221506938
TAHLPHPEG	9	Unmodified	_TAHLPHPEG_					0	0	0		ENST00000379660.4_1_6:8434627-8435642:-|nuORF	ENST00000379660.4_1_6:8434627-8435642:-|nuORF	ENST00000379660.4_1_6:8434627-8435642:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.740691	957.466829	-0.11292	-5.4174E-05	0.15525	7.4479E-05	0.042326	2.0306E-05	479.74078719762576	13.605	0.38496	13.537	13.416	13.801	-0.067496	0.014321	-2.1377E-05	NaN	1.8442	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43075			47580	9974	27236	27237							-0.013605564221506938
TAIALPATQK	10	Unmodified	_TAIALPATQK_					0	0	0			REV__ENSG00000161664|ENST00000293414|ASB16	REV__ENSG00000161664|ENST00000293414|ASB16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.811767578125	2	507.303124	1012.5917	0.3255	0.00016513	0.184	9.3344E-05	0.5095	0.00025847	507.3033089993588	46.952	0.29787	47.005	46.817	47.114	0.052574					16	8	2	0	0	0	0.21126	1	10643	10643		31.268	10.815	1	319120	+		47581	16947	27237	27238	58317	58317					0.0859031599438822
TAIALPATQK	10	Unmodified	_TAIALPATQK_					0	0	0			REV__ENSG00000161664|ENST00000293414|ASB16	REV__ENSG00000161664|ENST00000293414|ASB16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.303124	1012.5917	0.65622	0.0003329	-0.22289	-0.00011307	0.43333	0.00021983	507.80435413180163	47.066	0.21125	47.066	46.873	47.084	0	0.030797	-0.00029927	NaN	31.268	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	364490	+		47582	16947	27237	27238							0.0859031599438822
TAIALPATQK	10	Unmodified	_TAIALPATQK_					0	0	0			REV__ENSG00000161664|ENST00000293414|ASB16	REV__ENSG00000161664|ENST00000293414|ASB16	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	507.303124	1012.5917	0.3255	0.00016513	0.184	9.3344E-05	0.5095	0.00025847	507.3033089993588	46.952	0.29787	47.005	46.817	47.114	0.052574	-0.030797	0.00011356	NaN	31.268	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319120	+		47583	16947	27237	27238							0.0859031599438822
TAIETKVTV	9	Unmodified	_TAIETKVTV_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.281982421875	2	481.281857	960.549162	0.33046	0.00015905	0.090303	4.3461E-05	0.42077	0.00020251	481.28178328831206	36.615	1.2581	36.615	36.358	37.616	0					86	44	4	0	0	0	0.00010651	4	7472	7428;7472;7519;7607		139.78	54.14	1	1908900			47584	2429	27238	27239	58318;58319;58320;58321	58319					0.06730920866141332
TAIETKVTV	9	Unmodified	_TAIETKVTV_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2819519042969	2	481.281857	960.549162	0.37514	0.00018055	-0.011644	-5.6041E-06	0.36349	0.00017494	481.2817509473644	36.53	1.1622	36.613	36.331	37.493	0.082359					96	41	4	0	0	0	0.00054549	3	7440	7398;7440;7492		128.57	49.845	1	1894500			47585	2429	27238	27239	58322;58323;58324	58323					0.06730920866141332
TAIETKVTV	9	Unmodified	_TAIETKVTV_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2819519042969	2	481.281857	960.549162	0.70605	0.00033981	-0.29929	-0.00014404	0.40676	0.00019576	481.28161202685646	36.459	1.0888	36.545	36.3	37.388	0.086246					90	38	4	0	0	0	0.00054549	3	7433	7379;7433;7526		128.57	41.251	1	2104100			47586	2429	27238	27239	58325;58326;58327	58326					0.06730920866141332
TAIFILREEK	10	Unmodified	_TAIFILREEK_					0	0	0		ENST00000357681.9_1_1:203711380-203711470:+|nuORF	ENST00000357681.9_1_1:203711380-203711470:+|nuORF	ENST00000357681.9_1_1:203711380-203711470:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.24005126953125	3	407.239684	1218.69722	0.13054	5.3162E-05	-0.41437	-0.00016875	-0.28382	-0.00011558	407.23946557258836	48.753	0.7163	48.798	48.522	49.238	0.044891					39	25	2	0	0	0	0.36279	1	11171	11171		10.315	0.55098	1	657400			47587	9637	27239	27240	58328	58328					0.09662232119967484
TAIHRNNHLF	10	Unmodified	_TAIHRNNHLF_					0	0	0			REV__ENSG00000163378|ENST00000383701|EOGT	REV__ENSG00000163378|ENST00000383701|EOGT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.2062683105469	3	408.219506	1221.63669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.872	1	25.834	25.334	26.334	-0.038671								0	0	0	0.36787	1	4186	4186		6.6304	2.754	1		+		47588	17049	27240	27241	58329	58329					0.03473559580243091
TAIIQRMYSR	10	Unmodified	_TAIIQRMYSR_					0	0	0		nc|ENSG00000183960|Q96L42-2|KCNH8;ENST00000452398.5_1_3:19388190-19491848:+|nuORF;ENSG00000089558|ENST00000264661|KCNH4;ENSG00000183960|ENST00000328405|KCNH8	nc|ENSG00000183960|Q96L42-2|KCNH8	nc|ENSG00000183960|Q96L42-2|KCNH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2268981933594	3	413.560652	1237.66013	-0.057031	-2.3586E-05	-1.3253	-0.00054808	-1.3823	-0.00057167	413.89423451553745	14.264	0.373	14.159	14.023	14.396	-0.10466					20	12	2	0	0	0	0.31994	1	658	658		5.4027	0	1	59828			47589	1360	27241	27242	58330	58330					0.050802373025589986
TAIITAFIR	9	Unmodified	_TAIITAFIR_					0	0	0		ENST00000473253.5_1_3:174581768-175298945:+|nuORF;ENSG00000177694|ENST00000454872|NAALADL2;ENST00000414826.1_1_3:175177932-175205321:+|nuORF	ENST00000473253.5_1_3:174581768-175298945:+|nuORF	ENST00000473253.5_1_3:174581768-175298945:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.26629638671875	2	503.30821	1004.60187	0.2989	0.00015044	-2.0772	-0.0010455	-1.7783	-0.00089504	503.30652139398717	67.876	0.47777	67.86	67.593	68.071	-0.016296					37	16	3	0	0	0	0.11234	1	17071	17071		51.63	17.527	1	266450			47590	7011	27242	27243	58331	58331					0.09974923719607887
TAILWKPPS	9	Unmodified	_TAILWKPPS_					0	0	0		ENST00000434618.6_1_6:33269471-33269540:-|nuORF	ENST00000434618.6_1_6:33269471-33269540:-|nuORF	ENST00000434618.6_1_6:33269471-33269540:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8116760253906	2	506.794935	1011.57532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.086	1	47.086	46.586	47.586	0								0	0	0	0.17427	1	10664	10664		29.082	3.6823	1				47591	10500	27243	27244	58332	58332					0.06999234828276713
TAIVKQRRKRN	11	Unmodified	_TAIVKQRRKRN_					0	0	0		ENST00000254579.10_1_11:6578653-6578770:+|nuORF	ENST00000254579.10_1_11:6578653-6578770:+|nuORF	ENST00000254579.10_1_11:6578653-6578770:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.27105712890625	3	457.288143	1368.8426	0.52405	0.00023964	0.68434	0.00031294	1.2084	0.00055258	457.2880719736293	37.354	0.55488	37.354	37.124	37.679	0					53	19	4	0	0	0	0.3322	1	7732	7732		2.6312	0.19645	1	733090			47592	8917	27244	27245	58333	58333					0.17293132759550645
TAKEKQDFQL	10	Unmodified	_TAKEKQDFQL_					0	0	0			REV__ENSG00000163820|ENST00000296137|FYCO1	REV__ENSG00000163820|ENST00000296137|FYCO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2148742675781	3	403.215427	1206.62445	-0.084987	-3.4268E-05	-0.98905	-0.0003988	-1.074	-0.00043307	403.2151193522886	34.193	1.0801	34.193	33.617	34.697	0					70	38	3	0	0	0	0.36368	1	6739	6739		10.151	2.2052	1	675520	+		47593	17092	27245	27246	58334	58334					0.029404783265590595
TAKEKQDFQL	10	Unmodified	_TAKEKQDFQL_					0	0	0			REV__ENSG00000163820|ENST00000296137|FYCO1	REV__ENSG00000163820|ENST00000296137|FYCO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.21478271484375	3	403.215427	1206.62445	-0.26117	-0.00010531	-0.84304	-0.00033993	-1.1042	-0.00044523	403.21505014540503	34.006	0.75113	34.072	33.799	34.55	0.0667					67	26	4	0	0	0	0.38284	1	6678	6678		6.6304	0.43853	1	770130	+		47594	17092	27245	27246	58335	58335					0.029404783265590595
TAKGPSLPEL	10	Unmodified	_TAKGPSLPEL_					0	0	0		nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-2|TRIOBP	nc|ENSG00000100106|Q9H2D6-2|TRIOBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.29718017578125	2	506.787307	1011.56006	-0.059749	-3.028E-05	0.41514	0.00021039	0.35539	0.00018011	506.7874390376134	61.68	0.52758	61.672	61.451	61.979	-0.0085526					34	18	3	0	0	0	0.25821	1	15215	15215		34.932	8.6639	1	280010			47595	1534	27246	27247	58336	58336					0.05474323240423473
TAKGVNEKYLV	11	Unmodified	_TAKGVNEKYLV_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.86004638671875	3	407.899439	1220.67649	0.064552	2.6331E-05	3.3304	0.0013585	3.395	0.0013848	407.9005661882074	21.422	0.11532	21.373	21.29	21.405	-0.049377					5	3	2	0	0	0	0.3331	1	2836	2836		2.2527	0.66045	1	7215.4	+		47596	23129	27247	27248	58337	58337					0.07497641740314975
TAKKAFIR	8	Unmodified	_TAKKAFIR_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.22454833984375	2	467.795269	933.575986	-0.30845	-0.00014429	0.81589	0.00038167	0.50744	0.00023738	467.7955967048832	13.436	0.12144	13.436	13.336	13.457	0					6	3	2	0	0	0	0.34437	1	423	423		0.69038	0.088878	1	13263			47597	5756	27248	27249	58338	58338					0.10654074267984015
TAKLPAPSI	9	Unmodified	_TAKLPAPSI_					0	0	0		ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.2734680175781	2	449.273835	896.533118	0.032624	1.4657E-05	-0.28388	-0.00012754	-0.25126	-0.00011288	449.27359445676046	42.698	1.0391	42.698	42.141	43.18	0					94	37	3	0	0	0	3.4202E-05	4	9228	9228;9295;9340;9388		151.48	97.647	1	1695700			47598	618	27249	27250	58339;58340;58341;58342	58339					0.08071259419898524
TAKLPAPSI	9	Unmodified	_TAKLPAPSI_					0	0	0		ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.2737121582031	2	449.273835	896.533118	0.076231	3.4248E-05	-0.3532	-0.00015869	-0.27697	-0.00012444	449.2735667923807	42.613	1.1285	42.698	42.034	43.163	0.085201					94	40	3	0	0	0	4.216E-07	2	9288	9272;9288		163.69	92.553	1	1694700			47599	618	27249	27250	58343;58344	58344					0.08071259419898524
TAKLPAPSI	9	Unmodified	_TAKLPAPSI_					0	0	0		ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.273681640625	2	449.273835	896.533118	0.15571	6.9956E-05	-0.40395	-0.00018148	-0.24824	-0.00011153	449.27352889995916	42.548	1.1663	42.64	41.981	43.147	0.091362					97	41	4	0	0	0	4.216E-07	2	9263	9226;9263		163.69	92.553	1	1826200			47600	618	27249	27250	58345;58346	58346					0.08071259419898524
TAKLTLNSK	9	Unmodified	_TAKLTLNSK_					0	0	0		ENSG00000170419|ENST00000402613|VSTM2A	ENSG00000170419|ENST00000402613|VSTM2A	ENSG00000170419|ENST00000402613|VSTM2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2593994140625	2	488.295299	974.576045	0.17225	8.4106E-05	-0.34545	-0.00016868	-0.17321	-8.4577E-05	488.29516485412944	16.445	0.30716	16.445	16.267	16.574	0					19	10	2	0	0	0	0.24848	1	1334	1334		9.3831	1.473	1	64276			47601	6451	27250	27251	58347	58347					0.08774029477331169
TAKLYRMEEK	10	Unmodified	_TAKLYRMEEK_					0	0	0		ENST00000355819.5_1_12:10205351-10215657:+|nuORF	ENST00000355819.5_1_12:10205351-10215657:+|nuORF	ENST00000355819.5_1_12:10205351-10215657:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.2581481933594	3	423.560429	1267.65946	-0.10878	-4.6074E-05	0.34427	0.00014582	0.23549	9.9744E-05	423.89485670012215	26.811	0.44855	26.789	26.506	26.955	-0.021412					24	15	2	0	0	0	0.31994	1	4478	4478		3.0723	0	1	39108			47602	9613	27251	27252	58348	58348					0.03633397862881793
TAKLYRMEEK	10	Unmodified	_TAKLYRMEEK_					0	0	0		ENST00000355819.5_1_12:10205351-10215657:+|nuORF	ENST00000355819.5_1_12:10205351-10215657:+|nuORF	ENST00000355819.5_1_12:10205351-10215657:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	423.560429	1267.65946	0.14824	6.2788E-05	0.1024	4.3373E-05	0.25064	0.00010616	423.56037517476216	26.8	0.33334	26.789	26.595	26.928	-0.01156	-0.0045358	-0.00011863	NaN	3.0723	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82663			47603	9613	27251	27252							0.03633397862881793
TAKNLWLE	8	Unmodified	_TAKNLWLE_					0	0	0			REV__ENSG00000103365|ENST00000309859|GGA2	REV__ENSG00000103365|ENST00000309859|GGA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7505798339844	2	487.768917	973.523281	0.56712	0.00027662	-2.115	-0.0010316	-1.5479	-0.00075502	487.76994710712296	33.419	0.97272	33.485	32.958	33.93	0.06636					67	34	3	0	0	0	0.30503	1	6497	6497		30.225	1.738	1	169300	+		47604	14371	27252	27253	58349	58349					0.03546071414518792
TAKPDVSAL	9	Unmodified	_TAKPDVSAL_					0	0	0			REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.2532653808594	2	451.2531	900.491647	0.11071	4.9957E-05	0.37412	0.00016882	0.48483	0.00021878	451.2531575748148	59.214	0.51237	59.214	58.996	59.508	0					36	17	3	0	0	0	0.047483	1	14458	14458		53.833	9.9745	1	371280	+		47605	13712	27253	27254	58350	58350					0.03742078660570769
TAKPDVSAL	9	Unmodified	_TAKPDVSAL_					0	0	0			REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.25347900390625	2	451.2531	900.491647	0.1718	7.7527E-05	0.20029	9.038E-05	0.37209	0.00016791	451.25312804439005	59.077	0.61858	59.168	58.928	59.547	0.091305					42	21	3	0	0	0	0.023967	1	14371	14371		62.573	10.304	1	395010	+		47606	13712	27253	27254	58351	58351					0.03742078660570769
TAKPDVSAL	9	Unmodified	_TAKPDVSAL_					0	0	0			REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2531433105469	2	451.2531	900.491647	0.3215	0.00014508	0.15565	7.0238E-05	0.47715	0.00021532	451.25299420875325	59.182	0.51087	59.168	58.977	59.488	-0.014271					42	17	3	0	0	0	0.0083926	1	14407	14407		81.89	10.757	1	425780	+		47607	13712	27253	27254	58352	58352					0.03742078660570769
TAKPDVSAL	9	Unmodified	_TAKPDVSAL_					0	0	0			REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	451.2531	900.491647	0.3215	0.00014508	0.15565	7.0238E-05	0.47715	0.00021532	451.25299420875325	59.182	0.51087	59.168	58.977	59.488	-0.014271	-0.015592	-7.7622E-05	NaN	81.89	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	425780	+		47608	13712	27253	27254							0.03742078660570769
TAKPIPQI	8	Unmodified	_TAKPIPQI_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.2682189941406	2	434.268553	866.522553	-0.042083	-1.8275E-05	-0.56085	-0.00024356	-0.60294	-0.00026184	434.2681520031644	71.681	0.67293	71.681	71.375	72.048	0					42	23	2	0	0	0	0.1951	1	18280	18280		43.858	0	1	382510			47609	1623	27254	27255	58353	58353					0.08395276765475046
TAKPIPQI	8	Unmodified	_TAKPIPQI_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	434.268553	866.522553	0.0030844	1.3395E-06	-0.78315	-0.0003401	-0.78006	-0.00033876	434.26806479544473	71.656	0.74152	71.712	71.402	72.144	0.056572	0.021115	-0.00011582	NaN	43.858	39	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358360			47610	1623	27254	27255							0.08395276765475046
TAKPIPQI	8	Unmodified	_TAKPIPQI_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-2|DICER1	ENSG00000100697|ENST00000343455|DICER1	ENSG00000100697|ENST00000343455|DICER1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	434.268553	866.522553	0.018687	8.1151E-06	-0.61926	-0.00026893	-0.60058	-0.00026081	434.2680834280121	71.708	0.6116	71.68	71.397	72.009	-0.027267	-0.010772	2.6513E-05	NaN	43.858	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484310			47611	1623	27254	27255							0.08395276765475046
TAKSREQWSF	10	Unmodified	_TAKSREQWSF_					0	0	0			REV__ENST00000340149.6_1_11:77929679-77929994:-|nuORF	REV__ENST00000340149.6_1_11:77929679-77929994:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5264892578125	3	413.875405	1238.60439	0.1221	5.0533E-05	3.2076	0.0013275	3.3297	0.0013781	413.8765264548365	25.166	0.53264	25.11	24.748	25.281	-0.055929					23	18	2	0	0	0	0.31629	1	3943	3943		5.7834	1.9071	1	30793	+		47612	20105	27255	27256	58354	58354					-0.00537272613382811
TAKVKSHK	8	Unmodified	_TAKVKSHK_					0	0	0		ENST00000302450.10_1_2:113513811-113513868:-|nuORF	ENST00000302450.10_1_2:113513811-113513868:-|nuORF	ENST00000302450.10_1_2:113513811-113513868:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.77685546875	2	449.777077	897.5396	-0.037391	-1.6817E-05	-0.31853	-0.00014327	-0.35592	-0.00016008	449.77685428778415	18.19	1.2265	18.132	17.819	19.046	-0.058172					99	43	4	0	0	0	0.16948	1	1889	1889		48.346	0.75146	1	1313000			47613	9237	27256	27257	58355	58355					0.08673197371285823
TALAIKFTL	9	Unmodified	_TALAIKFTL_					0	0	0		nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y;ENST00000476359.1_1_Y:16733999-16863586:+|nuORF;nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000165246|ENST00000684976|NLGN4Y;NLGN4X|p.R765Lfs*14|1|0.04|ENSG00000146938|chrX:5892979-5892980|-/AACATAGAAGA|frameshift_variant;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X	nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y	nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2525634765625	2	489.305136	976.595718	0.31001	0.00015169	0.12199	5.9691E-05	0.43201	0.00021138	489.30508614561256	59.092	0.36384	59.183	59.015	59.379	0.091305					20	12	2	0	0	0	0.22596	1	14416	14416		21.747	7.165	1	156750			47614	5940	27257	27258	58356	58356					0.10648405488097978
TALAQIMTI	9	Oxidation (M)	_TALAQIM(Oxidation (M))TI_		TALAQIM(1)TI		TALAQIM(160)TI	0	0	1		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2702331542969	2	489.270435	976.526318	0.1116	5.4602E-05	0.40878	0.0002	0.52038	0.00025461	489.27041353979325	59.609	0.79457	59.609	59.241	60.035	0					65	27	3	0	0	0	5.7257E-07	3	14494	14494;14546;14614		157.8	83.372	1	1263700			47615	1474	27258	27259	58357;58358;58359	58357		184			0.03711578477043531
TALAQIMTI	9	Oxidation (M)	_TALAQIM(Oxidation (M))TI_		TALAQIM(1)TI		TALAQIM(170)TI	0	0	1		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2703552246094	2	489.270435	976.526318	0.17	8.3175E-05	0.16685	8.1637E-05	0.33685	0.00016481	489.2703701763315	59.506	0.74613	59.602	59.215	59.961	0.095093					65	26	3	0	0	0	1.6536E-07	3	14445	14445;14495;14550		173.69	84.783	1	1420800			47616	1474	27258	27259	58360;58361;58362	58360		184			0.03711578477043531
TALAQIMTI	9	Oxidation (M)	_TALAQIM(Oxidation (M))TI_		TALAQIM(1)TI		TALAQIM(190)TI	0	0	1		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2705383300781	2	489.270435	976.526318	0.44036	0.00021546	0.053353	2.6104E-05	0.49371	0.00024156	489.27026481310253	59.621	0.74156	59.609	59.199	59.94	-0.011486					65	25	3	0	0	0	4.8913E-11	3	14522	14475;14522;14571		187.3	87.497	1	1317600			47617	1474	27258	27259	58363;58364;58365	58364		184			0.03711578477043531
TALAVDKL	8	Unmodified	_TALAVDKL_					0	0	0			REV__nc|ENSG00000087589|Q9NQ75-3|CASS4	REV__nc|ENSG00000087589|Q9NQ75-3|CASS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.2381591796875	2	415.752736	829.490919	0.39239	0.00016314	-0.75946	-0.00031575	-0.36707	-0.00015261	415.75240299204665	37.402	0.44577	37.402	37.233	37.679	0					25	15	2	0	0	0	0.29394	1	7711	7711		36.127	0	1	223690	+		47618	13998	27259	27260	58366	58366					0.06935284011524345
TALAWSLEP	9	Unmodified	_TALAWSLEP_					0	0	0		ENST00000333039.2_2_22:39215633-39216080:-|nuORF	ENST00000333039.2_2_22:39215633-39216080:-|nuORF	ENST00000333039.2_2_22:39215633-39216080:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.79754638671875	2	494.260925	986.507297	0.47228	0.00023343	0.46121	0.00022796	0.93349	0.00046139	494.2609815626354	45.412	0.66122	45.477	45.091	45.753	0.065048					49	24	3	0	0	0	0.24913	1	10045	10045		12.532	7.3009	1	607920			47619	9456	27260	27261	58367	58367					0.013503651776204606
TALAWSLEP	9	Unmodified	_TALAWSLEP_					0	0	0		ENST00000333039.2_2_22:39215633-39216080:-|nuORF	ENST00000333039.2_2_22:39215633-39216080:-|nuORF	ENST00000333039.2_2_22:39215633-39216080:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	494.260925	986.507297	0.76105	0.00037616	0.00074967	3.7053E-07	0.7618	0.00037653	494.2608691865062	45.717	0.52092	45.717	45.424	45.945	0	0.16866	-0.00030456	NaN	12.532	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	603730			47620	9456	27260	27261							0.013503651776204606
TALAWSLEP	9	Unmodified	_TALAWSLEP_					0	0	0		ENST00000333039.2_2_22:39215633-39216080:-|nuORF	ENST00000333039.2_2_22:39215633-39216080:-|nuORF	ENST00000333039.2_2_22:39215633-39216080:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	494.260925	986.507297	0.66699	0.00032967	0.57322	0.00028332	1.2402	0.00061298	494.26113928352476	45.391	0.59661	45.451	45.223	45.819	0.059834	-0.097555	0.00026133	NaN	12.532	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	610140			47621	9456	27260	27261							0.013503651776204606
TALGIGSVL	9	Unmodified	_TALGIGSVL_					0	0	0		nc|ENSG00000162437|Q9HCJ3-2|RAVER2;ENSG00000162437|ENST00000294428|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	nc|ENSG00000162437|Q9HCJ3-2|RAVER2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.2382507324219	2	415.752736	829.490919	0.31234	0.00012986	-1.0007	-0.00041604	-0.68836	-0.00028619	415.7523270014678	37.351	0.52103	37.438	37.193	37.714	0.087406					29	18	2	0	0	0	0.1524	1	7691	7691		32.305	3.2239	1	215860			47622	5573	27261	27262	58368	58368					0.06935284011524345
TALKTIQK	8	Unmodified	_TALKTIQK_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2539978027344	2	451.78711	901.559667	-0.11677	-5.2754E-05	0.3762	0.00016996	0.25943	0.00011721	451.78717214853344	14.876	0.42299	14.812	14.646	15.069	-0.064413					25	14	3	0	0	0	0.34294	1	873	873		7.2892	0	1	115740			47623	8100	27262	27263	58369	58369					0.10494948311236385
TALKTLVI	8	Unmodified	_TALKTLVI_					0	0	0		ENSG00000167994|ENST00000394836|RAB3IL1	ENSG00000167994|ENST00000394836|RAB3IL1	ENSG00000167994|ENST00000394836|RAB3IL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.7556457519531	2	429.786579	857.558604	-0.10248	-4.4043E-05	-0.15507	-6.6645E-05	-0.25754	-0.00011069	429.78640773946495	49.652	0.42868	49.673	49.537	49.966	0.020691					30	15	3	0	0	0	0.32937	1	11436	11436		22.736	0	1	158660			47624	6230	27263	27264	58370	58370					0.12412733942323939
TALKVLEI	8	Unmodified	_TALKVLEI_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69747892-69752485:-|nuORF;nc|ENSG00000148634|Q5GLZ8-3|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.7837829589844	2	443.784036	885.553519	0.31951	0.00014179	-0.12288	-5.4532E-05	0.19663	8.7262E-05	443.78389846613237	55.202	0.86964	55.202	54.917	55.787	0					85	31	4	0	0	0	0.026582	2	13196	13146;13196		93.166	28.655	1	2033900			47625	4821	27264	27265	58371;58372	58372					0.10616430079699057
TALKVLEI	8	Unmodified	_TALKVLEI_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69747892-69752485:-|nuORF;nc|ENSG00000148634|Q5GLZ8-3|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.7840576171875	2	443.784036	885.553519	0.39619	0.00017582	-0.19927	-8.8434E-05	0.19691	8.7387E-05	443.78385538798597	55.162	0.93361	55.233	54.971	55.905	0.070885					70	34	3	0	0	0	0.026582	2	13130	13130;13179		93.166	29.596	1	2083900			47626	4821	27264	27265	58373;58374	58373					0.10616430079699057
TALKVLEI	8	Unmodified	_TALKVLEI_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69747892-69752485:-|nuORF;nc|ENSG00000148634|Q5GLZ8-3|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.7840270996094	2	443.784036	885.553519	0.37976	0.00016853	-0.23155	-0.00010276	0.14821	6.5775E-05	443.78383393354517	55.312	0.87686	55.293	54.976	55.853	-0.019081					62	32	3	0	0	0	0.026582	2	13218	13168;13218		93.166	33.092	1	2504800			47627	4821	27264	27265	58375;58376	58376					0.10616430079699057
TALLAPSRLS	10	Unmodified	_TALLAPSRLS_					0	0	0		ENSG00000105131|ENST00000221730|EPHX3	ENSG00000105131|ENST00000221730|EPHX3	ENSG00000105131|ENST00000221730|EPHX3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8107299804688	2	514.808574	1027.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.522	1	62.522	62.022	63.022	0								0	0	0	0.25932	1	15430	15430		32.786	0.4802	1				47628	1948	27265	27266	58377	58377					0.0898971836866167
TALLGVWIYGF	11	Unmodified	_TALLGVWIYGF_					0	0	0		ENSG00000138944|ENST00000381176|SHISAL1	ENSG00000138944|ENST00000381176|SHISAL1	ENSG00000138944|ENST00000381176|SHISAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.86114501953125	3	413.897258	1238.66995	-0.084065	-3.4794E-05	-2.4557	-0.0010164	-2.5398	-0.0010512	413.89605214483294	25.01	0.4501	25.01	24.817	25.267	0					25	15	2	0	0	0	0.33085	1	3926	3926		2.8433	0.10809	1	45407			47629	4204	27266	27267	58378	58378					0.06015748579579849
TALLKEAVELH	11	Unmodified	_TALLKEAVELH_					0	0	0		nc|ENSG00000168026|Q8NDW8-6|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.2062683105469	3	408.571322	1222.69214	-0.19874	-8.1199E-05	0.60727	0.00024811	0.40853	0.00016691	408.57157343552734	25.91	0.37464	25.871	25.694	26.069	-0.038671					22	12	2	0	0	0	0.33085	1	4186	4186		8.2864	2.7631	1	184760			47630	6237	27267	27268	58379	58379					0.08969928257374704
TALLKEAVELH	11	Unmodified	_TALLKEAVELH_					0	0	0		nc|ENSG00000168026|Q8NDW8-6|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	408.571322	1222.69214	-0.083225	-3.4003E-05	0.9104	0.00037196	0.82718	0.00033796	408.5717125603932	25.934	0.38263	25.912	25.722	26.105	-0.022238	0.020454	0.00023245	NaN	8.2864	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175650			47631	6237	27267	27268							0.08969928257374704
TALLPYTHVP	10	Unmodified	_TALLPYTHVP_					0	0	0			REV__ENST00000519177.5_1_8:121583594-121823792:-|nuORF	REV__ENST00000519177.5_1_8:121583594-121823792:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.76806640625	2	556.310949	1110.60735	0.49616	0.00027602	-0.72417	-0.00040286	-0.22801	-0.00012684	556.3103975994122	48.237	0.33688	48.281	48.121	48.458	0.04332					18	12	2	0	0	0	0.31267	1	10962	10962		14.838	1.3304	1	369510	+		47632	17697	27268	27269	58380	58380					0.0564660251143323
TALNHALH	8	Unmodified	_TALNHALH_					0	0	0			REV__ENST00000594496.5_1_19:6414689-6414863:-|nuORF	REV__ENST00000594496.5_1_19:6414689-6414863:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.73760986328125	2	438.737951	875.46135	-0.27893	-0.00012238	0.56917	0.00024972	0.29024	0.00012734	438.73793698682346	13.349	0.40318	13.349	13.227	13.63	0					16	13	2	0	0	0	0.45169	1	414	414		5.2307	0	1	78032	+		47633	22586	27269	27270	58381	58381					0.018637647860373363
TALNHALH	8	Unmodified	_TALNHALH_					0	0	0			REV__ENST00000594496.5_1_19:6414689-6414863:-|nuORF	REV__ENST00000594496.5_1_19:6414689-6414863:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	438.737951	875.46135	-0.27893	-0.00012238	0.56917	0.00024972	0.29024	0.00012734	438.73793698682346	13.349	0.40318	13.349	13.227	13.63	0	0.022436	0.00014982	NaN	5.2307	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78032	+		47634	22586	27269	27270							0.018637647860373363
TALNHALH	8	Unmodified	_TALNHALH_					0	0	0			REV__ENST00000594496.5_1_19:6414689-6414863:-|nuORF	REV__ENST00000594496.5_1_19:6414689-6414863:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	438.737951	875.46135	-0.28968	-0.00012709	0.017437	7.6504E-06	-0.27224	-0.00011944	438.73798563394723	13.397	0.25178	13.298	13.189	13.441	-0.099291	-0.0289	-0.00033432	NaN	5.2307	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69772	+		47635	22586	27269	27270							0.018637647860373363
TALNHALH	8	Unmodified	_TALNHALH_					0	0	0			REV__ENST00000594496.5_1_19:6414689-6414863:-|nuORF	REV__ENST00000594496.5_1_19:6414689-6414863:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	438.737951	875.46135	-0.31095	-0.00013643	0.46894	0.00020574	0.15799	6.9317E-05	438.7380052478047	13.401	0.47061	13.334	13.215	13.686	-0.067496	0.0064646	6.1865E-05	NaN	5.2307	24	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73530	+		47636	22586	27269	27270							0.018637647860373363
TALPASPVAR	10	Unmodified	_TALPASPVAR_					0	0	0		nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C;nc|ENSG00000095370|Q8N5H7-3|SH2D3C;SH2D3C|p.L729Sfs*10|1|0.23|ENSG00000095370|chr9:127740273-127740273|G/-|frameshift_variant	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.29736328125	2	491.787641	981.56073	-0.6234	-0.00030658	-0.20301	-9.984E-05	-0.82642	-0.00040642	491.7875472940042	35.112	0.71486	35.112	34.751	35.466	0					41	25	2	0	0	0	0.34053	1	6964	6964		14.405	0	1	312950			47637	1449	27270	27271	58382	58382					0.06921162680134785
TALQIQPPGS	10	Unmodified	_TALQIQPPGS_					0	0	0		ENSG00000162522|ENST00000401073|KIAA1522;nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3	ENSG00000162522|ENST00000401073|KIAA1522	ENSG00000162522|ENST00000401073|KIAA1522	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2972106933594	2	506.277106	1010.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.925	1	61.925	61.425	62.425	0								0	0	0	0.35421	1	15246	15246		13.042	0.51092	1				47638	5578	27271	27272	58383	58383					0.03481152580627622
TALQQKQVS	9	Unmodified	_TALQQKQVS_					0	0	0		ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A	ENST00000468312.1_1_17:40370167-40384145:-|nuORF	ENST00000468312.1_1_17:40370167-40384145:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7921447753906	2	501.782556	1001.55056	0.25239	0.00012664	-0.16302	-8.1798E-05	0.089372	4.4845E-05	501.7823710756647	22.294	0.39749	22.193	22.074	22.471	-0.10034					24	14	3	0	0	0	0.259	1	3068	3068		5.2969	5.2969	1	54961			47639	6748	27272	27273	58384	58384					0.04984554954910436
TALQQKQVS	9	Unmodified	_TALQQKQVS_					0	0	0		ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A	ENST00000468312.1_1_17:40370167-40384145:-|nuORF	ENST00000468312.1_1_17:40370167-40384145:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	501.782556	1001.55056	0.23521	0.00011803	-0.07573	-3.8E-05	0.15948	8.0027E-05	501.78244676935924	22.258	0.53561	22.258	21.94	22.476	0	0.025467	7.3515E-06	NaN	5.2969	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68341			47640	6748	27272	27273							0.04984554954910436
TALQQKQVS	9	Unmodified	_TALQQKQVS_					0	0	0		ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000173757|ENST00000293328|STAT5B;nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A	ENST00000468312.1_1_17:40370167-40384145:-|nuORF	ENST00000468312.1_1_17:40370167-40384145:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	501.782556	1001.55056	0.13427	6.7375E-05	0.058364	2.9286E-05	0.19263	9.6661E-05	501.78268523254246	22.295	0.51932	22.245	22.005	22.524	-0.049377	0.01322	0.00014192	NaN	5.2969	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64626			47641	6748	27272	27273							0.04984554954910436
TALRGLRTKPF	11	Unmodified	_TALRGLRTKPF_					0	0	0			REV__ENSG00000168263|ENST00000382082|KCNV2	REV__ENSG00000168263|ENST00000382082|KCNV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.5904235839844	3	420.59094	1258.75099	-0.00031313	-1.317E-07	-0.5197	-0.00021858	-0.52001	-0.00021871	420.59042244056474	26.787	0.73721	26.766	26.478	27.215	-0.021412					64	25	4	0	0	0	0.45629	1	4512	4512		3.8459	0.49018	1	239710	+		47642	17448	27273	27274	58385	58385					0.13196449342353844
TALSASMSSL	10	Unmodified	_TALSASMSSL_					0	0	0		nc|ENSG00000146828|Q9BXP2-2|SLC12A9;nc|ENSG00000146828|Q9BXP2-3|SLC12A9;nc|ENSG00000146828|Q9BXP2-4|SLC12A9;ENSG00000146828|ENST00000354161|SLC12A9;ENST00000487651.5_1_7:100457471-100457768:+|nuORF;ENST00000448342.5_1_7:100456529-100458660:+|nuORF;ENST00000475623.1_1_7:100456676-100458183:+|nuORF	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.77423095703125	2	484.241875	966.469197	0.40453	0.00019589	0.45844	0.000222	0.86297	0.00041789	484.2418671996747	40.359	0.85409	40.359	39.968	40.822	0					56	30	3	0	0	0	0.24708	1	8578	8578		29.082	10.935	1	534890			47643	4729	27274	27275	58386	58386					-0.015378887993506396
TALSASMSSL	10	Unmodified	_TALSASMSSL_					0	0	0		nc|ENSG00000146828|Q9BXP2-2|SLC12A9;nc|ENSG00000146828|Q9BXP2-3|SLC12A9;nc|ENSG00000146828|Q9BXP2-4|SLC12A9;ENSG00000146828|ENST00000354161|SLC12A9;ENST00000487651.5_1_7:100457471-100457768:+|nuORF;ENST00000448342.5_1_7:100456529-100458660:+|nuORF;ENST00000475623.1_1_7:100456676-100458183:+|nuORF	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7740783691406	2	484.241875	966.469197	0.4549	0.00022028	0.37673	0.00018243	0.83163	0.00040271	484.2417982098719	40.259	0.82763	40.352	40.051	40.879	0.09267					58	29	3	0	0	0	0.29038	1	8599	8599		18.146	5.9057	1	516100			47644	4729	27274	27275	58387	58387					-0.015378887993506396
TALSASMSSL	10	Unmodified	_TALSASMSSL_					0	0	0		nc|ENSG00000146828|Q9BXP2-2|SLC12A9;nc|ENSG00000146828|Q9BXP2-3|SLC12A9;nc|ENSG00000146828|Q9BXP2-4|SLC12A9;ENSG00000146828|ENST00000354161|SLC12A9;ENST00000487651.5_1_7:100457471-100457768:+|nuORF;ENST00000448342.5_1_7:100456529-100458660:+|nuORF;ENST00000475623.1_1_7:100456676-100458183:+|nuORF	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	nc|ENSG00000146828|Q9BXP2-2|SLC12A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.774169921875	2	484.241875	966.469197	0.4178	0.00020232	0.39348	0.00019054	0.81128	0.00039285	484.24172045688545	40.218	0.7942	40.317	40.09	40.884	0.099407					55	28	3	0	0	0	0.31039	1	8526	8526		18.146	7.3224	1	630010			47645	4729	27274	27275	58388	58388					-0.015378887993506396
TALVWGWWLLF	11	Unmodified	_TALVWGWWLLF_					0	0	0			REV__nc|ENSG00000146276|P24046-2|GABRR1	REV__nc|ENSG00000146276|P24046-2|GABRR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7823181152344	3	464.588536	1390.74378	0.37686	0.00017509	-0.16523	-7.6766E-05	0.21163	9.832E-05	464.5885202373207	44.926	0.31963	45.001	44.723	45.042	0.075047					19	11	2	0	0	0	0.32951	1	9944	9944		4.4062	0	1	158990	+		47646	16340	27275	27276	58389	58389					0.06403716741942844
TALWALLSL	9	Unmodified	_TALWALLSL_					0	0	0			REV__ENST00000584871.5_1_17:80015993-80017016:-|nuORF	REV__ENST00000584871.5_1_17:80015993-80017016:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.30792236328125	2	494.29731	986.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.145	1	66.228	65.728	66.728	0.083832								0	0	0	0.20639	1	16532	16532		20.454	0	1		+		47647	22506	27276	27277	58390	58390					0.08624118971056305
TAMDVVYALK	10	Oxidation (M)	_TAM(Oxidation (M))DVVYALK_		TAM(1)DVVYALK		TAM(140)DVVYALK	0	0	1		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.7942504882812	2	563.794275	1125.574	0.21803	0.00012292	0.11481	6.4729E-05	0.33284	0.00018765	563.7942024693879	43.795	0.54459	43.795	43.545	44.09	0					51	19	3	0	0	0	2.0929E-05	2	9644	9644;9694		143.91	119.89	1	1649100			47648	5353	27277	27278	58391;58392	58391		646			0.016232326772069428
TAMDVVYALK	10	Oxidation (M)	_TAM(Oxidation (M))DVVYALK_		TAM(1)DVVYALK		TAM(110)DVVYALK	0	0	1		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.7939453125	2	563.794275	1125.574	0.41673	0.00023495	-0.20438	-0.00011523	0.21235	0.00011972	563.7939301699321	43.606	0.64871	43.683	43.425	44.074	0.077515					62	23	4	0	0	0	0.0017481	2	9576	9576;9664		110.79	85.802	1	1526700			47649	5353	27277	27278	58393;58394	58393		646			0.016232326772069428
TAMDVVYALK	10	Oxidation (M)	_TAM(Oxidation (M))DVVYALK_		TAM(1)DVVYALK		TAM(130)DVVYALK	0	0	1		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.7936401367188	2	563.794275	1125.574	0.47967	0.00027044	-0.94411	-0.00053228	-0.46444	-0.00026185	563.7935833258226	44.205	0.92802	44.274	43.966	44.894	0.068569					77	34	4	0	0	0	0.00013576	3	9776	9731;9776;9829		132.38	101.74	1	2132400			47650	5353	27277	27278	58395;58396;58397	58396		646			0.016232326772069428
TAMDVVYALK	10	Oxidation (M)	_TAM(Oxidation (M))DVVYALK_		TAM(1)DVVYALK		TAM(120)DVVYALK	0	0	1		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7944946289062	2	563.794275	1125.574	0.3448	0.00019439	-0.14181	-7.9953E-05	0.20298	0.00011444	563.794016065917	43.635	0.55975	43.719	43.41	43.97	0.083996					60	20	4	0	0	0	0.0009599	2	9558	9558;9608		121.35	86.944	1	1863200			47651	5353	27277	27278	58398;58399	58398		646			0.016232326772069428
TAMDVVYALK	10	Oxidation (M)	_TAM(Oxidation (M))DVVYALK_		TAM(1)DVVYALK		TAM(130)DVVYALK	0	0	1		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7936401367188	2	563.794275	1125.574	0.25179	0.00014196	-0.68816	-0.00038798	-0.43637	-0.00024602	563.7936968613361	44.109	0.95256	44.193	43.891	44.844	0.083996					74	34	3	0	0	0	0.00013576	3	9760	9712;9760;9810		132.38	101.74	1	1685000			47652	5353	27277	27278	58400;58401;58402	58401		646			0.016232326772069428
TAMDVVYALK	10	Oxidation (M)	_TAM(Oxidation (M))DVVYALK_					0	0	1		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.794275	1125.574	0.36955	0.00020835	-0.99477	-0.00056085	-0.62523	-0.0003525	563.7935634957396	44.358	0.89672	44.358	44.065	44.961	0	0.083347	-0.00011198	NaN	132.38	73	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2232700			47653	5353	27277	27278				646			0.016232326772069428
TANPERKP	8	Unmodified	_TANPERKP_					0	0	0		ENSG00000104885|ENST00000398665|DOT1L;nc|ENSG00000104885|Q8TEK3-1|DOT1L	ENSG00000104885|ENST00000398665|DOT1L	ENSG00000104885|ENST00000398665|DOT1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.23516845703125	2	456.748516	911.482479	-0.049153	-2.2451E-05	0.20366	9.3022E-05	0.15451	7.0571E-05	456.7485897014355	17.457	1.156	17.34	16.909	18.065	-0.11739					103	40	4	0	0	0	0.41097	1	1791	1791		18.135	3.2967	1	1331400			47654	1931	27278	27279	58403	58403					0.02319730094905026
TANPERKP	8	Unmodified	_TANPERKP_					0	0	0		ENSG00000104885|ENST00000398665|DOT1L;nc|ENSG00000104885|Q8TEK3-1|DOT1L	ENSG00000104885|ENST00000398665|DOT1L	ENSG00000104885|ENST00000398665|DOT1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2349853515625	2	456.748516	911.482479	0.15233	6.9577E-05	0.087494	3.9963E-05	0.23983	0.00010954	456.74849831231575	17.394	1.0569	17.333	16.971	18.028	-0.060429					108	37	4	0	0	0	0.41097	1	1790	1790		18.135	3.2967	1	1298900			47655	1931	27278	27279	58404	58404					0.02319730094905026
TAPDAALTLA	10	Unmodified	_TAPDAALTLA_					0	0	0		nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5;nc|ENSG00000140691|Q96C12-3|ARMC5;nc|ENSG00000140691|Q96C12-4|ARMC5	nc|ENSG00000140691|Q96C12-2|ARMC5	nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2583923339844	2	472.258382	942.502212	0.15841	7.4811E-05	-0.24412	-0.00011529	-0.085711	-4.0478E-05	472.25821527236525	52.583	0.55157	52.583	52.408	52.96	0					39	19	3	0	0	0	0.18562	1	12372	12372		34.402	1.616	1	494680			47656	4329	27279	27280	58405	58405					0.028660613149781966
TAPDAALTLA	10	Unmodified	_TAPDAALTLA_					0	0	0		nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5;nc|ENSG00000140691|Q96C12-3|ARMC5;nc|ENSG00000140691|Q96C12-4|ARMC5	nc|ENSG00000140691|Q96C12-2|ARMC5	nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	472.258382	942.502212	0.34963	0.00016512	-0.12515	-5.9102E-05	0.22448	0.00010601	472.2581493485873	52.639	0.59084	52.689	52.417	53.008	0.050575	0.027982	2.8403E-05	NaN	34.402	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437380			47657	4329	27279	27280							0.028660613149781966
TAPDAALTLA	10	Unmodified	_TAPDAALTLA_					0	0	0		nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5;nc|ENSG00000140691|Q96C12-3|ARMC5;nc|ENSG00000140691|Q96C12-4|ARMC5	nc|ENSG00000140691|Q96C12-2|ARMC5	nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	472.258382	942.502212	0.16919	7.9901E-05	-0.065239	-3.081E-05	0.10395	4.9091E-05	472.25829159685014	52.713	0.59527	52.712	52.469	53.065	-0.00081253	0.05064	8.4989E-05	NaN	34.402	38	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369910			47658	4329	27279	27280							0.028660613149781966
TAPFDVVLR	9	Unmodified	_TAPFDVVLR_					0	0	0			REV__PKD2L1|p.E323D|1|0.26|ENSG00000107593|chr10:100297196-100297196|C/A|missense_variant	REV__PKD2L1|p.E323D|1|0.26|ENSG00000107593|chr10:100297196-100297196|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8105773925781	2	509.290017	1016.56548	0.37188	0.00018939	0.099989	5.0923E-05	0.47186	0.00024032	509.29035685573996	59.049	0.80285	59.035	58.712	59.515	-0.014267					37	27	2	0	0	0	0.22674	1	14341	14341		17.113	0	1	194740	+		47659	23286	27280	27281	58406	58406					0.057860468229023354
TAPLEFLE	8	Unmodified	_TAPLEFLE_					0	0	0			REV__nc|ENSG00000133657|Q9H7F0|ATP13A3	REV__nc|ENSG00000133657|Q9H7F0|ATP13A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7662658691406	2	460.242201	918.469849	-0.25421	-0.000117	-3.6766	-0.0016921	-3.9308	-0.0018091	460.24027634128873	12.848	0.43307	12.781	12.64	13.073	-0.067495					17	14	2	0	0	0	0.34218	1	308	308		9.3474	0	1	31810	+		47660	15630	27281	27282	58407	58407					0.00735273912005141
TAPLHTSV	8	Unmodified	_TAPLHTSV_					0	0	0			REV__ENST00000438676.1_1_6:75994738-75994903:+|nuORF	REV__ENST00000438676.1_1_6:75994738-75994903:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2268981933594	2	413.226885	824.439217	-0.045396	-1.8759E-05	-0.055372	-2.2881E-05	-0.10077	-4.164E-05	413.2268284255644	14.326	1.6797	14.222	13.79	15.469	-0.10466					167	58	4	0	0	0	0.4419	2	658	658;797		8.5933	0	1	1827200	+		47661	21031	27282	27283	58408;58409	58408					0.019975403176090367
TAPPAGAGAL	10	Unmodified	_TAPPAGAGAL_					0	0	0		ENST00000505086.2_1_5:140019102-140021704:+|nuORF	ENST00000505086.2_1_5:140019102-140021704:+|nuORF	ENST00000505086.2_1_5:140019102-140021704:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2267761230469	2	413.226885	824.439217	-0.12112	-5.0052E-05	0.00050691	2.0947E-07	-0.12062	-4.9842E-05	413.22684318770104	14.35	1.6202	14.284	13.802	15.422	-0.066068					175	56	5	0	0	0	0.33268	1	717	717		15.847	3.6065	1	1561400			47662	11311	27283	27284	58410	58410					0.019975403176204054
TAPPARNR	8	Unmodified	_TAPPARNR_					0	0	0		ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7488708496094	2	441.74885	881.483148	-0.15606	-6.894E-05	0.5267	0.00023267	0.37064	0.00016373	441.7490046766438	13.477	0.6785	13.477	13.254	13.932	0					42	23	3	0	0	0	0.32038	1	447	447		28.487	3.0875	1	132790			47663	5665	27284	27285	58411	58411					0.03766569534604969
TAPPARNR	8	Unmodified	_TAPPARNR_					0	0	0		ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.74884033203125	2	441.74885	881.483148	-0.24786	-0.00010949	0.74203	0.00032779	0.49418	0.0002183	441.7489314038975	13.56	0.81103	13.461	13.217	14.028	-0.099291					48	28	2	0	0	0	0.33441	1	466	466		26.884	7.6267	1	119270			47664	5665	27284	27285	58412	58412					0.03766569534604969
TAPPARNR	8	Unmodified	_TAPPARNR_					0	0	0		ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7488098144531	2	441.74885	881.483148	-0.18604	-8.2183E-05	0.58115	0.00025672	0.39511	0.00017454	441.74892522467314	13.605	0.79008	13.537	13.215	14.005	-0.067496					56	27	3	0	0	0	0.30517	1	460	460		30.225	3.3412	1	132750			47665	5665	27284	27285	58413	58413					0.03766569534604969
TAPPGVLKI	9	Unmodified	_TAPPGVLKI_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2845764160156	2	448.284203	894.553853	0.0072908	3.2683E-06	0.50991	0.00022858	0.5172	0.00023185	448.2842703760442	46.339	0.69969	46.339	46.003	46.703	0					50	25	2	0	0	0	0.17277	1	10420	10420		27.629	15.097	1	852100			47666	1991	27285	27286	58414	58414					0.10235849799562402
TAPPGVLKI	9	Unmodified	_TAPPGVLKI_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.28424072265625	2	448.284203	894.553853	0.06189	2.7745E-05	0.37343	0.0001674	0.43532	0.00019515	448.2842012181216	46.218	0.8401	46.278	45.984	46.824	0.059834					65	30	3	0	0	0	0.20626	1	10357	10357		22.736	12.662	1	1028600			47667	1991	27285	27286	58415	58415					0.10235849799562402
TAPPGVLKI	9	Unmodified	_TAPPGVLKI_					0	0	0		ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	ENSG00000105538|ENST00000222145|RASIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.2427673339844	2	448.284203	894.553853	0.16348	7.3284E-05	0.33989	0.00015237	0.50337	0.00022565	448.28422018186535	46.265	0.88687	46.33	45.951	46.838	0.065048					56	31	2	0	0	0	0.22674	1	10422	10422		22.736	14.143	1	1009700			47668	1991	27285	27286	58416	58416					0.10235849799562402
TAPPPYSPSPN	11	Unmodified	_TAPPPYSPSPN_					0	0	0		ENSG00000054965|ENST00000356467|FAM168A;nc|ENSG00000054965|Q92567|FAM168A	ENSG00000054965|ENST00000356467|FAM168A	ENSG00000054965|ENST00000356467|FAM168A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.270751953125	2	564.272021	1126.52949	0.12356	6.9721E-05	-0.39395	-0.0002223	-0.27039	-0.00015258	564.2715816523055	57.297	0.54105	57.28	57.065	57.606	-0.0172					34	19	2	0	0	0	0.24435	1	13829	13829		27.223	5.6863	1	478080			47669	696	27286	27287	58417	58417					-0.02871455144600077
TAPQAEPWGMH	11	Unmodified	_TAPQAEPWGMH_					0	0	0			REV__ENST00000466933.1_1_20:60768535-60768667:+|nuORF	REV__ENST00000466933.1_1_20:60768535-60768667:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5523376464844	3	408.853724	1223.53934	0.0038672	1.5811E-06	-0.23907	-9.7744E-05	-0.2352	-9.6162E-05	408.8535180814527	22.119	0.31529	22.019	21.917	22.233	-0.10034					18	11	2	0	0	0	0.33287	1	3058	3058		1.3296	0.63198	1	37940	+		47670	21292	27287	27288	58418	58418					-0.06348590410902943
TAPSWEAREWS	11	Unmodified	_TAPSWEAREWS_					0	0	0			REV__ENST00000374870.8_1_X:62974345-62974399:-|nuORF	REV__ENST00000374870.8_1_X:62974345-62974399:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.53863525390625	3	440.538681	1318.59421	-0.29965	-0.00013201	0.025967	1.1439E-05	-0.27368	-0.00012057	440.53877589824094	12.19	0.32573	12.122	12.051	12.377	-0.06806					22	12	2	0	0	0	0.47545	1	52	52		1.3296	0	1	74076	+		47671	20468	27288	27289	58419	58419					-0.052338803386419386
TAPVTSIH	8	Unmodified	_TAPVTSIH_					0	0	0		PROSER1|p.R529Gfs*27|1|0.06|ENSG00000120685|chr13:39013667-39013668|-/ACTCC|frameshift_variant;nc|ENSG00000120685|Q86XN7-2|PROSER1;ENSG00000120685|ENST00000352251|PROSER1	PROSER1|p.R529Gfs*27|1|0.06|ENSG00000120685|chr13:39013667-39013668|-/ACTCC|frameshift_variant	PROSER1|p.R529Gfs*27|1|0.06|ENSG00000120685|chr13:39013667-39013668|-/ACTCC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2267150878906	2	413.226885	824.439217	-0.34575	-0.00014287	0.23262	9.6124E-05	-0.11313	-4.6747E-05	413.22693508593534	14.259	1.5973	14.259	13.847	15.445	0					160	55	4	0	0	0	0.42758	2	777	777;830		13.508	0	1	1678900			47672	2955	27289	27290	58420;58421	58420					0.019975403176204054
TAPVTSIH	8	Unmodified	_TAPVTSIH_					0	0	0		PROSER1|p.R529Gfs*27|1|0.06|ENSG00000120685|chr13:39013667-39013668|-/ACTCC|frameshift_variant;nc|ENSG00000120685|Q86XN7-2|PROSER1;ENSG00000120685|ENST00000352251|PROSER1	PROSER1|p.R529Gfs*27|1|0.06|ENSG00000120685|chr13:39013667-39013668|-/ACTCC|frameshift_variant	PROSER1|p.R529Gfs*27|1|0.06|ENSG00000120685|chr13:39013667-39013668|-/ACTCC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.22674560546875	2	413.226885	824.439217	-0.12112	-5.0052E-05	0.00050691	2.0947E-07	-0.12062	-4.9842E-05	413.22684318770104	14.35	1.6202	14.284	13.802	15.422	-0.066068					175	56	5	0	0	0	0.42758	2	766	766;811		13.508	0	1	1561400			47673	2955	27289	27290	58422;58423	58422					0.019975403176204054
TAQDGDKL	8	Unmodified	_TAQDGDKL_					0	0	0		nc|ENSG00000174562|Q9H2R5-5|KLK15	nc|ENSG00000174562|Q9H2R5-5|KLK15	nc|ENSG00000174562|Q9H2R5-5|KLK15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.2581481933594	2	424.211432	846.408311	-0.15906	-6.7475E-05	0.49718	0.00021091	0.33812	0.00014343	424.2116311502723	26.62	0.5633	26.582	26.316	26.879	-0.038671					34	19	2	0	0	0	0.34092	1	4478	4478		13.508	0	1	111110			47674	12845	27290	27291	58424	58424					-0.021036577872905582
TAQDGDKL	8	Unmodified	_TAQDGDKL_					0	0	0		nc|ENSG00000174562|Q9H2R5-5|KLK15	nc|ENSG00000174562|Q9H2R5-5|KLK15	nc|ENSG00000174562|Q9H2R5-5|KLK15	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	424.211432	846.408311	0.13112	5.5623E-05	0.074952	3.1795E-05	0.20607	8.7419E-05	424.2114075725564	26.602	0.59518	26.58	26.298	26.893	-0.022238	-0.0010293	-0.00017254	NaN	13.508	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99846			47675	12845	27290	27291							-0.021036577872905582
TAQEPLFSNK	10	Unmodified	_TAQEPLFSNK_					0	0	0		ENST00000606320.5_1_12:123714929-123715004:-|nuORF	ENST00000606320.5_1_12:123714929-123715004:-|nuORF	ENST00000606320.5_1_12:123714929-123715004:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.296630859375	2	567.793121	1133.57169	0.43418	0.00024652	3.3887	0.0019241	3.8229	0.0021706	567.7930331826835	32.741	0.60915	32.796	32.562	33.171	0.055309					55	21	4	0	0	0	0.0058776	1	6302	6302		87.123	52.722	1	424480			47676	12297	27291	27292	58425	58425					0.010245202637634065
TAQEPLFSNK	10	Unmodified	_TAQEPLFSNK_					0	0	0		ENST00000606320.5_1_12:123714929-123715004:-|nuORF	ENST00000606320.5_1_12:123714929-123715004:-|nuORF	ENST00000606320.5_1_12:123714929-123715004:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.7935180664062	2	567.793121	1133.57169	0.25251	0.00014337	3.1825	0.001807	3.4351	0.0019504	567.7930427360792	32.789	0.56675	32.843	32.553	33.119	0.054375					55	20	3	0	0	0	0.067194	1	6318	6318		55.249	33.712	1	467570			47677	12297	27291	27292	58426	58426					0.010245202637634065
TAQIPGAAP	9	Unmodified	_TAQIPGAAP_					0	0	0		ENST00000236273.8_1_1:25555609-25558980:-|nuORF;ENST00000476231.1_1_1:25558586-25558992:-|nuORF	ENST00000236273.8_1_1:25555609-25558980:-|nuORF	ENST00000236273.8_1_1:25555609-25558980:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2267150878906	2	413.226885	824.439217	-0.12112	-5.0052E-05	0.00050691	2.0947E-07	-0.12062	-4.9842E-05	413.22684318770104	14.35	1.6202	14.284	13.802	15.422	-0.066068					175	56	5	0	0	0	0.28674	1	858	858		10.824	0	1	1561400			47678	8874	27292	27293	58427	58427					0.019975403176090367
TAQLKANLL	9	Unmodified	_TAQLKANLL_					0	0	0			REV__nc|ENSG00000166313|O00213-2|APBB1	REV__nc|ENSG00000166313|O00213-2|APBB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2852783203125	2	486.297842	970.581131	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.647	1	34.647	34.147	35.147	0								0	0	0	0.20639	1	6854	6854		20.454	5.6154	1		+		47679	17306	27293	27294	58428	58428					0.09466333339935318
TAQLKVLEADP	11	Unmodified	_TAQLKVLEADP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.8136596679688	2	592.829703	1183.64485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.665	1	61.762	61.262	62.262	0.096985								0	0	0	0.30959	1	15159	15159		17.113	4.8722	1				47680	5186	27294	27295	58429	58429					0.06037648986375643
TAQLSLTKLRF	11	Unmodified	_TAQLSLTKLRF_					0	0	0			REV__nc|ENSG00000124181|P19174|PLCG1	REV__nc|ENSG00000124181|P19174|PLCG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.2310485839844	3	426.590717	1276.75032	0.058693	2.5038E-05	-0.098353	-4.1956E-05	-0.039659	-1.6918E-05	426.59061382921465	36.421	0.47884	36.504	36.331	36.809	0.082355					38	16	3	0	0	0	0.33263	1	7451	7451		3.8459	2.3908	1	308670	+		47681	15213	27295	27296	58430	58430					0.12301609902624477
TAQLSLTKLRF	11	Unmodified	_TAQLSLTKLRF_					0	0	0			REV__nc|ENSG00000124181|P19174|PLCG1	REV__nc|ENSG00000124181|P19174|PLCG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.231689453125	3	426.590717	1276.75032	0.4047	0.00017264	-0.39106	-0.00016682	0.013641	5.819E-06	426.5904021835779	36.44	0.55878	36.527	36.333	36.892	0.08625					44	19	3	0	0	0	0.33169	1	7445	7445		3.8459	2.2536	1	233120	+		47682	15213	27295	27296	58431	58431					0.12301609902624477
TAQPPLVK	8	Unmodified	_TAQPPLVK_					0	0	0			REV__ENSG00000007545|ENST00000397412|CRAMP1	REV__ENSG00000007545|ENST00000397412|CRAMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.5470886230469	2	427.260728	852.506903	-0.29165	-0.00012461	0.12514	5.3469E-05	-0.16651	-7.1144E-05	427.26065847017964	28.574	0.69849	28.575	28.322	29.02	0.0004673					50	24	3	0	0	0	0.3366	1	4948	4948		7.9102	1.187	1	205130	+		47683	13389	27296	27297	58432	58432					0.07474990248419999
TAQQETLVQ	9	Unmodified	_TAQQETLVQ_					0	0	0			REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5	REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.28240966796875	2	509.264196	1016.51384	0.11815	6.017E-05	1.6311	0.00083067	1.7493	0.00089084	509.26455703316304	22.678	0.25742	22.678	22.533	22.791	0					9	8	2	0	0	0	0.17277	1	3230	3230		27.629	8.3718	1	19620	+		47684	19334	27297	27298	58433	58433					0.006242583383368583
TAQQKYFS	8	Unmodified	_TAQQKYFS_					0	0	0		nc|ENSG00000165186|Q96NR3-2|PTCHD1;ENSG00000165186|ENST00000379361|PTCHD1	nc|ENSG00000165186|Q96NR3-2|PTCHD1	nc|ENSG00000165186|Q96NR3-2|PTCHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2852783203125	2	486.742899	971.471246	-0.52101	-0.0002536	0.72213	0.00035149	0.20112	9.7894E-05	486.74320959840554	34.478	0.4182	34.478	34.306	34.725	0					24	14	2	0	0	0	0.34092	1	6854	6854		8.5933	0	1	163900			47685	5936	27298	27299	58434	58434					-0.01563091999230437
TAQQVGDLTFK	11	Unmodified	_TAQQVGDLTFK_					0	0	0		nc|ENSG00000144061|O15259-3|NPHP1;ENSG00000144061|ENST00000445609|NPHP1;nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1;ENST00000496524.5_1_2:110922048-110962545:-|nuORF	nc|ENSG00000144061|O15259-3|NPHP1	nc|ENSG00000144061|O15259-3|NPHP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.215087890625	3	403.215427	1206.62445	-0.26117	-0.00010531	-0.84304	-0.00033993	-1.1042	-0.00044523	403.21505014540503	34.006	0.75113	34.072	33.799	34.55	0.0667					67	26	4	0	0	0	0.36161	1	6630	6630		16.275	8.3291	1	770130			47686	4564	27299	27300	58435	58435					0.02940478326536322
TAQQVGDLTFK	11	Unmodified	_TAQQVGDLTFK_					0	0	0		nc|ENSG00000144061|O15259-3|NPHP1;ENSG00000144061|ENST00000445609|NPHP1;nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1;ENST00000496524.5_1_2:110922048-110962545:-|nuORF	nc|ENSG00000144061|O15259-3|NPHP1	nc|ENSG00000144061|O15259-3|NPHP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	403.215427	1206.62445	-0.084987	-3.4268E-05	-0.98905	-0.0003988	-1.074	-0.00043307	403.2151193522886	34.193	1.0801	34.193	33.617	34.697	0	0.067919	1.512E-05	NaN	16.275	70	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	675520			47687	4564	27299	27300							0.02940478326536322
TAQQVGDLTFK	11	Unmodified	_TAQQVGDLTFK_					0	0	0		nc|ENSG00000144061|O15259-3|NPHP1;ENSG00000144061|ENST00000445609|NPHP1;nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1;ENST00000496524.5_1_2:110922048-110962545:-|nuORF	nc|ENSG00000144061|O15259-3|NPHP1	nc|ENSG00000144061|O15259-3|NPHP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	403.215427	1206.62445	0.01161	4.6814E-06	-1.1449	-0.00046165	-1.1333	-0.00045697	403.21499398386374	34.044	0.97013	34.11	33.76	34.73	0.06636	-0.014962	-0.00017342	NaN	16.275	70	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	646160			47688	4564	27299	27300							0.02940478326536322
TARGRGDFGA	10	Unmodified	_TARGRGDFGA_					0	0	0		ENST00000424751.2_1_10:42971086-42971329:+|nuORF	ENST00000424751.2_1_10:42971086-42971329:+|nuORF	ENST00000424751.2_1_10:42971086-42971329:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2630920410156	2	504.254497	1006.49444	0.17317	8.7323E-05	-1.6314	-0.00082265	-1.4582	-0.00073532	504.2539330947037	29.263	0.30794	29.277	29.113	29.421	0.013474					15	10	2	0	0	0	0.30978	1	5228	5228		14.405	0	1	63087			47689	10399	27300	27301	58436	58436					-0.008546531619117559
TARKLRSH	8	Unmodified	_TARKLRSH_					0	0	0		ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7740783691406	2	484.79105	967.567546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.355	1	40.447	39.947	40.947	0.09267								0	0	0	0.35985	1	8599	8599		10.183	0.83596	1				47690	7619	27301	27302	58437	58437					0.08246520351372055
TARPQRTLA	9	Unmodified	_TARPQRTLA_					0	0	0			REV__nc|ENSG00000032444|Q8IY17-5|PNPLA6	REV__nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.78814697265625	2	507.296165	1012.57778	0.18339	9.3035E-05	3.4458	0.0017481	3.6292	0.0018411	507.8007580913751	27.234	0.078896	27.223	27.187	27.266	-0.01156					4	2	2	0	0	0	0.25779	1	4591	4591		6.2058	1.8765	1	16671	+		47691	13497	27302	27303	58438	58438					0.07199083285956931
TARRRQQQQLL	11	Unmodified	_TARRRQQQQLL_					0	0	0		ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2270202636719	3	466.607652	1396.80113	0.19713	9.1984E-05	1.1902	0.00055536	1.3873	0.00064735	466.6077734220582	97.697	0.31845	97.69	97.621	97.939	-0.0068207					54	34	3	0	0	0	0.33346	1	26225	26225		0.50596	0.051438	1	103310			47692	2344	27303	27304	58439	58439					0.11859952000236262
TARSGRGRV	9	Unmodified	_TARSGRGRV_					0	0	0			REV__ENSG00000001617|ENST00000002829|SEMA3F	REV__ENSG00000001617|ENST00000002829|SEMA3F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.2794189453125	2	480.278306	958.54206	-0.14758	-7.0878E-05	1.1711	0.00056245	1.0235	0.00049157	480.2796173997166	13.101	0.54837	13.033	12.64	13.189	-0.067496					25	18	2	0	0	0	0.26168	1	344	344		1.8442	1.0506	1	87103	+		47693	13316	27304	27305	58440	58440					0.06113045828954
TARSTKLQ	8	Unmodified	_TARSTKLQ_					0	0	0		KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant;nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.56524658203125	2	452.764166	903.513779	-0.20291	-9.1871E-05	-0.052542	-2.3789E-05	-0.25545	-0.00011566	452.7640719123762	13.507	0.33082	13.44	13.329	13.66	-0.067496					14	11	2	0	0	0	0.34353	1	510	510		4.756	0.42677	1	92826			47694	4033	27305	27306	58441	58441					0.05816303128983691
TARTLRNRQK	10	Unmodified	_TARTLRNRQK_					0	0	0		ENST00000480001.5_1_3:25470222-25636040:+|nuORF	ENST00000480001.5_1_3:25470222-25636040:+|nuORF	ENST00000480001.5_1_3:25470222-25636040:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.2500915527344	3	415.249577	1242.7269	0.41333	0.00017163	1.0221	0.00042441	1.4354	0.00059604	415.24995739738614	35.954	0.85864	36.041	35.645	36.503	0.086246					59	30	3	0	0	0	0.32615	1	7246	7246		17.049	5.4172	1	1005700			47695	10999	27306	27307	58442	58442					0.11524608908689515
TASFAVRK	8	Unmodified	_TASFAVRK_					0	0	0		ENSG00000100347|ENST00000350028|SAMM50;ENST00000474323.5_1_22:44371844-44392260:+|nuORF	ENSG00000100347|ENST00000350028|SAMM50	ENSG00000100347|ENST00000350028|SAMM50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.8862609863281	2	440.255977	878.497401	-0.21305	-9.3798E-05	-0.086523	-3.8092E-05	-0.29958	-0.00013189	440.2559211428574	13.64	0.38986	13.64	13.457	13.847	0					21	13	2	0	0	0	0.34092	1	499	499		8.5933	3.3626	1	15832			47696	1576	27307	27308	58443	58443					0.05329221962904285
TASGVGFILG	10	Unmodified	_TASGVGFILG_					0	0	0		ENSG00000135953|ENST00000258436|MFSD9	ENSG00000135953|ENST00000258436|MFSD9	ENSG00000135953|ENST00000258436|MFSD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.60028076171875	2	461.255643	920.496732	0.29025	0.00013388	0.76577	0.00035322	1.056	0.0004871	461.256284594264	26.85	0.87233	26.838	26.367	27.239	-0.01156					63	30	3	0	0	0	0.27772	1	4461	4461		26.884	2.8631	1	583300			47697	3926	27308	27309	58444	58444					0.03330382523188291
TASIRPCPS	9	Unmodified	_TASIRPCPS_					0	0	0			REV__ENST00000262965.9_1_19:1611426-1611666:-|nuORF	REV__ENST00000262965.9_1_19:1611426-1611666:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.23681640625	2	466.236927	930.459301	0.49734	0.00023188	-0.34445	-0.0001606	0.15289	7.1281E-05	466.23664596044455	20.28	1.4381	20.227	19.738	21.176	-0.05291					129	51	3	0	0	0	0.20626	1	2659	2659		22.736	0.98964	1	1562700	+		47698	19612	27309	27310	58445	58445					-0.008710320140835393
TASLLGNLR	9	Unmodified	_TASLLGNLR_					0	0	0		ENSG00000167992|ENST00000335613|VWCE;ENST00000301770.10_1_11:61034988-61050313:-|nuORF	ENSG00000167992|ENST00000335613|VWCE	ENSG00000167992|ENST00000335613|VWCE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.2535400390625	2	472.779816	943.545079	0.0088067	4.1636E-06	0.34328	0.0001623	0.35209	0.00016646	472.7801219060501	16.599	0.37368	16.599	16.405	16.779	0					21	12	3	0	0	0	0.25066	1	1401	1401		11.64	0	1	81747			47699	6229	27310	27311	58446	58446					0.07104876163100471
TASPKSTQLA	10	Unmodified	_TASPKSTQLA_					0	0	0			REV__ENST00000461261.1_1_3:48453511-48454330:-|nuORF	REV__ENST00000461261.1_1_3:48453511-48454330:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2645263671875	2	502.274564	1002.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.387	1	90.478	89.978	90.978	0.090668								0	0	0	0.36441	1	23948	23948		8.7454	3.0136	1		+		47700	21216	27311	27312	58447	58447					0.03340848718005418
TASQHLPAL	9	Unmodified	_TASQHLPAL_					0	0	0			REV__ENSG00000015133|ENST00000389857|CCDC88C	REV__ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.2583312988281	2	469.258717	936.50288	0.12571	5.8989E-05	-0.077026	-3.6145E-05	0.04868	2.2844E-05	469.2586981065494	44.334	0.54346	44.334	44.09	44.633	0					28	19	2	0	0	0	0.26612	1	9827	9827		13.906	0	1	579080	+		47701	13451	27312	27313	58448	58448					0.03208900754691513
TASQHLPAL	9	Unmodified	_TASQHLPAL_					0	0	0			REV__ENSG00000015133|ENST00000389857|CCDC88C	REV__ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.258544921875	2	469.258717	936.50288	0.21963	0.00010306	-0.27929	-0.00013106	-0.059657	-2.7995E-05	469.2585014565242	44.249	0.46164	44.324	44.122	44.583	0.075047					30	16	2	0	0	0	0.26612	1	9803	9803		13.906	0	1	423980	+		47702	13451	27312	27313	58449	58449					0.03208900754691513
TASRPITL	8	Unmodified	_TASRPITL_					0	0	0		ENST00000596318.1_1_19:49553653-49553959:-|nuORF	ENST00000596318.1_1_19:49553653-49553959:-|nuORF	ENST00000596318.1_1_19:49553653-49553959:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.7557067871094	2	429.75581	857.497067	-0.078737	-3.3838E-05	-0.077071	-3.3122E-05	-0.15581	-6.696E-05	429.7559030766042	49.333	1.6934	49.377	49.073	50.766	0.044891					142	62	5	0	0	0	0.23736	1	11495	11495		37.974	0	1	20502000			47703	12227	27313	27314	58450	58450					0.06261802243045622
TASSLFLHL	9	Unmodified	_TASSLFLHL_					0	0	0			REV__ENSG00000152463|ENST00000378228|OLAH	REV__ENSG00000152463|ENST00000378228|OLAH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.77691650390625	2	494.776742	987.538931	0.5997	0.00029672	-0.24239	-0.00011993	0.35731	0.00017679	494.77656757440616	60.504	0.98033	60.504	60.175	61.155	0					90	35	4	0	0	0	0.0030686	3	14803	14755;14803;14848		101.72	19.858	1	10838000	+		47704	16578	27314	27315	58451;58452;58453	58452					0.0446635793156247
TASSLFLHL	9	Unmodified	_TASSLFLHL_					0	0	0			REV__ENSG00000152463|ENST00000378228|OLAH	REV__ENSG00000152463|ENST00000378228|OLAH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.77655029296875	2	494.776742	987.538931	0.49837	0.00024658	-0.17818	-8.8161E-05	0.32019	0.00015842	494.7765932812497	60.408	0.82829	60.504	60.18	61.008	0.095093					88	29	4	0	0	0	0.0030686	3	14714	14714;14764;14816		101.72	31.006	1	9156700	+		47705	16578	27314	27315	58454;58455;58456	58454					0.0446635793156247
TASSLFLHL	9	Unmodified	_TASSLFLHL_					0	0	0			REV__ENSG00000152463|ENST00000378228|OLAH	REV__ENSG00000152463|ENST00000378228|OLAH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7767333984375	2	494.776742	987.538931	0.61188	0.00030274	-0.25261	-0.00012499	0.35926	0.00017775	494.7765576855694	60.497	0.74711	60.487	60.169	60.917	-0.010452					91	27	4	0	0	0	0.0030686	3	14790	14740;14790;14829		101.72	19.858	1	9844800	+		47706	16578	27314	27315	58457;58458;58459	58458					0.0446635793156247
TASSLLLIL	9	Unmodified	_TASSLLLIL_					0	0	0		nc|ENSG00000131233|P57773-2|GJA9	nc|ENSG00000131233|P57773-2|GJA9	nc|ENSG00000131233|P57773-2|GJA9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2539367675781	2	465.797143	929.579734	0.31905	0.00014861	1.0767	0.00050155	1.3958	0.00065016	465.79749695598326	40.509	0.32635	40.608	40.368	40.694	0.099407					18	11	2	0	0	0	0.25066	1	8583	8583		11.64	0	1	86064			47707	12699	27315	27316	58460	58460					0.1121269925120032
TASSPRNV	8	Unmodified	_TASSPRNV_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.7399597167969	2	416.219591	830.42463	0.28984	0.00012064	-0.33191	-0.00013815	-0.042073	-1.7512E-05	416.2195861306096	21.211	0.62363	21.158	20.947	21.571	-0.052912					31	21	2	0	0	0	0.34247	1	2872	2872		8.5933	3.3626	1	71590	+		47708	18266	27316	27317	58461	58461					0.002634681694871688
TASTATITK	9	Unmodified	_TASTATITK_					0	0	0		nc|ENSG00000152936|Q8N9Z9-2|LMNTD1;nc|ENSG00000152936|Q8N9Z9-3|LMNTD1;nc|ENSG00000152936|Q8N9Z9-4|LMNTD1;nc|ENSG00000152936|Q8N9Z9|LMNTD1;ENSG00000152936|ENST00000458174|LMNTD1	nc|ENSG00000152936|Q8N9Z9-2|LMNTD1	nc|ENSG00000152936|Q8N9Z9-2|LMNTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.76092529296875	2	447.250557	892.486562	0.1882	8.4173E-05	-0.46799	-0.00020931	-0.27979	-0.00012514	447.25021300877756	16.814	0.87622	16.814	16.548	17.424	0					67	30	3	0	0	0	0.29638	1	1519	1519		9.3831	0	1	398150			47709	5046	27317	27318	58462	58462					0.036017747979599335
TASTATITK	9	Unmodified	_TASTATITK_					0	0	0		nc|ENSG00000152936|Q8N9Z9-2|LMNTD1;nc|ENSG00000152936|Q8N9Z9-3|LMNTD1;nc|ENSG00000152936|Q8N9Z9-4|LMNTD1;nc|ENSG00000152936|Q8N9Z9|LMNTD1;ENSG00000152936|ENST00000458174|LMNTD1	nc|ENSG00000152936|Q8N9Z9-2|LMNTD1	nc|ENSG00000152936|Q8N9Z9-2|LMNTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.760986328125	2	447.250557	892.486562	0.30097	0.00013461	-0.49077	-0.0002195	-0.1898	-8.4886E-05	447.2502127431696	16.873	1.0282	16.811	16.558	17.586	-0.062534					87	36	3	0	0	0	0.29638	1	1544	1544		9.3831	0	1	480750			47710	5046	27317	27318	58463	58463					0.036017747979599335
TASTGIAFSF	10	Unmodified	_TASTGIAFSF_					0	0	0			REV__ENST00000377126.3_1_9:73029208-73029247:-|nuORF	REV__ENST00000377126.3_1_9:73029208-73029247:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8187561035156	2	501.250557	1000.48656	0.4259	0.00021348	-0.68277	-0.00034224	-0.25687	-0.00012875	501.25016417938474	43.665	0.26935	43.749	43.522	43.791	0.083996					12	9	2	0	0	0	0.30586	1	9539	9539		9.3831	0	1	160140	+		47711	20501	27318	27319	58464	58464					-0.013662252020367305
TASVLPGLLR	10	Unmodified	_TASVLPGLLR_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;ENST00000564865.5_1_16:2155621-2156021:-|nuORF;ENST00000540075.1_1_16:15226876-15227405:-|nuORF;ENST00000532739.1_1_16:16463294-16464996:+|nuORF;ENST00000561991.5_1_16:2153598-2156273:-|nuORF;ENST00000339303.5_16:18434460-18437593:-|nuORF;ENST00000496574.6_1_16:2155621-2157078:-|nuORF;ENST00000486339.6_1_16:2155757-2157078:-|nuORF;ENST00000415938.7_1_16:2152605-2162466:-|nuORF;ENST00000483731.5_1_16:2153201-2162466:-|nuORF;ENST00000343738.10_1_16:15225462-15227850:-|nuORF	nc|ENSG00000008710|P98161-2|PKD1;ENST00000343738.10_1_16:15225462-15227850:-|nuORF	nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7504272460938	2	513.818941	1025.62333	0.27817	0.00014293	1.8691	0.00096039	2.1473	0.0011033	513.8202935067167	64.902	0.12626	64.902	64.834	64.96	0					6	4	2	0	0	0	0.31039	1	16178	16178		13.042	8.1455	1	65755			47712	401;9545	27319	27320	58465	58465					0.11154308748336916
TATKQLHR	8	Unmodified	_TATKQLHR_					0	0	0		ENSG00000141384|ENST00000269142|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.3003845214844	2	477.777608	953.540663	0.31701	0.00015146	-0.079002	-3.7745E-05	0.23801	0.00011372	477.77736746491433	23.666	0.71787	23.627	23.391	24.108	-0.038927					37	24	2	0	0	0	0.34218	1	3639	3639		9.3474	2.0582	1	97357			47713	4373	27320	27321	58466	58466					0.062034117401822186
TATLWIAVF	9	Unmodified	_TATLWIAVF_					0	0	0		ENST00000526482.1_1_14:92920194-92959969:+|nuORF;nc|ENSG00000140090|Q8NFF2-4|SLC24A4;nc|ENSG00000140090|Q8NFF2-2|SLC24A4;nc|ENSG00000140090|Q8NFF2-3|SLC24A4;ENSG00000140090|ENST00000532405|SLC24A4	ENST00000526482.1_1_14:92920194-92959969:+|nuORF	ENST00000526482.1_1_14:92920194-92959969:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.28973388671875	2	511.289485	1020.56442	0.46714	0.00023884	-1.5214	-0.00077789	-1.0543	-0.00053905	511.28933106463285	88.198	2.5431	88.198	87.463	90.006	0					388	133	6	0	0	0	0.20344	1	23421	23421		23.148	0	1	4904100			47714	4281	27321	27322	58467	58467					0.0549583245398253
TATLWIAVF	9	Unmodified	_TATLWIAVF_					0	0	0		ENST00000526482.1_1_14:92920194-92959969:+|nuORF;nc|ENSG00000140090|Q8NFF2-4|SLC24A4;nc|ENSG00000140090|Q8NFF2-2|SLC24A4;nc|ENSG00000140090|Q8NFF2-3|SLC24A4;ENSG00000140090|ENST00000532405|SLC24A4	ENST00000526482.1_1_14:92920194-92959969:+|nuORF	ENST00000526482.1_1_14:92920194-92959969:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2896728515625	2	511.289485	1020.56442	0.33164	0.00016957	-1.1374	-0.00058152	-0.80571	-0.00041195	511.28939559290933	88.107	2.5639	88.196	87.627	90.191	0.089195					432	148	6	0	0	0	0.20344	1	23361	23361		23.148	0	1	4964000			47715	4281	27321	27322	58468	58468					0.0549583245398253
TATLWIAVF	9	Unmodified	_TATLWIAVF_					0	0	0		ENST00000526482.1_1_14:92920194-92959969:+|nuORF;nc|ENSG00000140090|Q8NFF2-4|SLC24A4;nc|ENSG00000140090|Q8NFF2-2|SLC24A4;nc|ENSG00000140090|Q8NFF2-3|SLC24A4;ENSG00000140090|ENST00000532405|SLC24A4	ENST00000526482.1_1_14:92920194-92959969:+|nuORF	ENST00000526482.1_1_14:92920194-92959969:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.289794921875	2	511.289485	1020.56442	0.31607	0.0001616	-0.98484	-0.00050354	-0.66877	-0.00034194	511.28943265081284	88.222	2.0685	88.219	87.694	89.762	-0.0028381					381	109	6	0	0	0	0.20344	1	23410	23410		23.148	1.4018	1	5633300			47716	4281	27321	27322	58469	58469					0.0549583245398253
TATMHILVV	9	Oxidation (M)	_TATM(Oxidation (M))HILVV_		TATM(1)HILVV		TATM(67)HILVV	0	0	1		ENSG00000164880|ENST00000404767|INTS1;ENST00000468115.1_1_7:1523234-1533501:-|nuORF	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.81878662109375	2	500.778428	999.542302	0.33798	0.00016925	-0.19616	-9.8231E-05	0.14182	7.102E-05	500.77838406052626	43.366	1.3611	43.366	42.678	44.039	0					123	49	4	0	0	0	0.05508	1	9508	9508		67.344	25.249	1	1795800			47717	5889	27322	27323	58470	58470		697			0.04251284713939185
TATMHILVV	9	Oxidation (M)	_TATM(Oxidation (M))HILVV_		TATM(1)HILVV		TATM(67)HILVV	0	0	1		ENSG00000164880|ENST00000404767|INTS1;ENST00000468115.1_1_7:1523234-1533501:-|nuORF	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.81884765625	2	500.778428	999.542302	0.51166	0.00025623	0.15319	7.6717E-05	0.66485	0.00033294	500.7783289827299	43.236	1.0923	43.313	42.883	43.975	0.077515					86	39	3	0	0	0	0.025459	1	9494	9494		67.344	33.241	1	2089700			47718	5889	27322	27323	58471	58471		697			0.04251284713939185
TATMHILVV	9	Oxidation (M)	_TATM(Oxidation (M))HILVV_		TATM(1)HILVV		TATM(48)HILVV	0	0	1		ENSG00000164880|ENST00000404767|INTS1;ENST00000468115.1_1_7:1523234-1533501:-|nuORF	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7785339355469	2	500.778428	999.542302	0.31277	0.00015663	0.41989	0.00021027	0.73266	0.0003669	500.77847086029414	43.19	0.97022	43.274	42.896	43.866	0.083996					83	35	3	0	0	0	0.062246	1	9502	9502		48.346	17.709	1	1872200			47719	5889	27322	27323	58472	58472		697			0.04251284713939185
TATRSRSRKAL	11	Unmodified	_TATRSRSRKAL_					0	0	0			REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L	REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.23211669921875	3	416.249465	1245.72657	0.028847	1.2008E-05	-3.0495	-0.0012694	-3.0207	-0.0012574	416.2486070856198	16.231	0.11937	16.117	16.02	16.139	-0.11434					5	3	2	0	0	0	0.33236	1	1263	1263		4.4062	1.9714	1	10790	+		47720	14150	27323	27324	58473	58473					0.11353189188844226
TATTKLPTK	9	Unmodified	_TATTKLPTK_					0	0	0			REV__ENST00000519806.1_1_8:40532148-40554851:-|nuORF	REV__ENST00000519806.1_1_8:40532148-40554851:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.789794921875	2	480.78985	959.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.314	1	16.199	15.699	16.699	-0.11434								0	0	0	0.25197	1	1292	1292		5.7319	0	1		+		47721	17204	27324	27325	58474	58474					0.08374627103034982
TATVTATAIVT	11	Unmodified	_TATVTATAIVT_					0	0	0		nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-7|AFF2	nc|ENSG00000155966|P51816-2|AFF2	nc|ENSG00000155966|P51816-2|AFF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2669067382812	2	524.797872	1047.58119	0.16368	8.5901E-05	0.61207	0.00032121	0.77576	0.00040712	524.7982317014764	12.934	0.24317	12.934	12.847	13.09	0					19	8	3	0	0	0	0.33324	1	250	250		1.1933	0	1	67577			47722	5209	27325	27326	58475	58475					0.05930288549279794
TAVERFVKWQ	10	Unmodified	_TAVERFVKWQ_					0	0	0			REV__ENST00000505609.5_3_4:77987453-77995993:-|nuORF	REV__ENST00000505609.5_3_4:77987453-77995993:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.8995666503906	3	421.899662	1262.67716	-0.40179	-0.00016951	-0.91264	-0.00038504	-1.3144	-0.00055456	421.89945772848256	12.406	0.20961	12.338	12.253	12.462	-0.06806					15	6	3	0	0	0	0.40262	1	122	122		1.4551	0.82829	1	51538	+		47723	21742	27326	27327	58476	58476					0.056324811800323005
TAVERFVKWQ	10	Unmodified	_TAVERFVKWQ_					0	0	0			REV__ENST00000505609.5_3_4:77987453-77995993:-|nuORF	REV__ENST00000505609.5_3_4:77987453-77995993:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	421.899662	1262.67716	-0.40179	-0.00016951	-0.91264	-0.00038504	-1.3144	-0.00055456	421.89945772848256	12.406	0.20961	12.338	12.253	12.462	-0.06806	-0.0030293	2.0941E-05	NaN	1.4551	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51538	+		47724	21742	27326	27327							0.056324811800323005
TAVESFLTI	9	Unmodified	_TAVESFLTI_					0	0	0		ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7689208984375	2	490.768583	979.522613	0.49635	0.0002436	0.27586	0.00013539	0.77222	0.00037898	490.7685453970897	77.06	1.1816	77.06	76.668	77.85	0					103	43	4	0	0	0	9.3868E-05	2	19880	19832;19880		141.83	67.404	1	2158500			47725	4539	27327	27328	58477;58478	58478					0.03203231974816845
TAVESFLTI	9	Unmodified	_TAVESFLTI_					0	0	0		ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.768798828125	2	490.768583	979.522613	0.39943	0.00019603	0.39891	0.00019577	0.79834	0.0003918	490.7686030286772	76.989	1.2821	77.045	76.642	77.924	0.055412					95	45	3	0	0	0	9.3868E-05	2	19854	19806;19854		141.83	67.404	1	2418700			47726	4539	27327	27328	58479;58480	58480					0.03203231974816845
TAVESFLTI	9	Unmodified	_TAVESFLTI_					0	0	0		ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.76873779296875	2	490.768583	979.522613	0.64565	0.00031686	0.062328	3.0589E-05	0.70798	0.00034745	490.7684540693393	77.069	1.4093	77.037	76.682	78.092	-0.031334					114	51	3	0	0	0	9.3868E-05	2	19880	19831;19880		141.83	67.404	1	2136500			47727	4539	27327	27328	58481;58482	58482					0.03203231974816845
TAVPFVNGVLF	11	Unmodified	_TAVPFVNGVLF_					0	0	0		ENST00000493175.1_1_9:130715879-130742356:-|nuORF;nc|ENSG00000167106|Q5T9C2-2|EEIG1;ENSG00000167106|ENST00000373095|EEIG1	ENST00000493175.1_1_9:130715879-130742356:-|nuORF	ENST00000493175.1_1_9:130715879-130742356:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3264770507812	2	582.326599	1162.63865	0.30057	0.00017503	0.92252	0.00053721	1.2231	0.00071223	582.3271947683108	20.202	0.80919	20.202	19.933	20.742	0					35	29	2	0	0	0	0.47649	1	2526	2526		1.1933	0.59184	1	123870			47728	6148	27328	27329	58483	58483					0.06383175545511222
TAVSSRRTVIR	11	Unmodified	_TAVSSRRTVIR_					0	0	0		ENST00000020945.3_2_8:49832997-49833910:-|nuORF	ENST00000020945.3_2_8:49832997-49833910:-|nuORF	ENST00000020945.3_2_8:49832997-49833910:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.2383117675781	3	415.917716	1244.73132	0.32387	0.0001347	1.9141	0.0007961	2.238	0.0009308	415.91847908617694	37.002	0.68333	37.09	36.841	37.524	0.08741					44	24	3	0	0	0	0.32477	1	7639	7639		6.2344	1.8282	1	192070			47729	8770	27329	27330	58484	58484					0.11874073331591717
TAVSSRRTVIR	11	Unmodified	_TAVSSRRTVIR_					0	0	0		ENST00000020945.3_2_8:49832997-49833910:-|nuORF	ENST00000020945.3_2_8:49832997-49833910:-|nuORF	ENST00000020945.3_2_8:49832997-49833910:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.2383728027344	3	415.917716	1244.73132	0.42816	0.00017808	2.5569	0.0010635	2.9851	0.0012416	415.9184917308588	36.977	0.86146	37.07	36.846	37.707	0.093018					41	31	2	0	0	0	0.32477	1	7620	7620		6.2344	1.8282	1	236360			47730	8770	27329	27330	58485	58485					0.11874073331591717
TAVSTLLVQ	9	Unmodified	_TAVSTLLVQ_					0	0	0			REV__ENSG00000182308|ENST00000333141|DCAF4L1	REV__ENSG00000182308|ENST00000333141|DCAF4L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2765808105469	2	466.276575	930.538597	0.17532	8.1746E-05	-0.2256	-0.00010519	-0.050285	-2.3447E-05	466.2763770325665	40.686	0.49994	40.779	40.531	41.031	0.09267					45	18	3	0	0	0	0.088391	1	8733	8733		39.957	0.0076237	1	905260	+		47731	18188	27330	27331	58486	58486					0.07054938211729223
TAYAHYLL	8	Unmodified	_TAYAHYLL_					0	0	0		ENSG00000164169|ENST00000322396|PRMT9	ENSG00000164169|ENST00000322396|PRMT9	ENSG00000164169|ENST00000322396|PRMT9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.2480163574219	2	476.25036	950.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.665	1	19.549	19.049	20.049	-0.11592								0	0	0	0.35014	1	2305	2305		14.582	2.0501	1				47732	5803	27331	27332	58487	58487					0.00894399868752771
TAYDAFLDAF	10	Unmodified	_TAYDAFLDAF_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2797241210938	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.13	1	118.15	117.65	118.65	0.023476								0	0	0	0.36922	1	30597	30597		6.7232	0.51738	1		+		47733	14898	27332	27333	58488	58488					-0.05326259893195129
TAYGFMQSI	9	Oxidation (M)	_TAYGFM(Oxidation (M))QSI_		TAYGFM(1)QSI		TAYGFM(160)QSI	0	0	1		ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1;ENST00000465624.5_1_3:158537406-158546768:+|nuORF;ENST00000468409.1_1_3:158541222-158542039:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2366943359375	2	517.236593	1032.45863	0.61324	0.00031719	0.033683	1.7422E-05	0.64692	0.00033461	517.2365582113623	54.053	1.0851	54.053	53.595	54.68	0					110	39	5	0	0	0	5.7257E-07	1	12805	12805		157.8	75.905	1	2975400			47734	2846	27333	27334	58489	58489		360			-0.05629871453788837
TAYGFMQSI	9	Oxidation (M)	_TAYGFM(Oxidation (M))QSI_		TAYGFM(1)QSI		TAYGFM(150)QSI	0	0	1		ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1;ENST00000465624.5_1_3:158537406-158546768:+|nuORF;ENST00000468409.1_1_3:158541222-158542039:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.23681640625	2	517.236593	1032.45863	0.32955	0.00017045	0.31721	0.00016407	0.64676	0.00033453	517.2366863586917	54.004	1.0488	54.065	53.616	54.665	0.061153					110	39	4	0	0	0	7.3453E-05	1	12789	12789		145.13	70.201	1	2981100			47735	2846	27333	27334	58490	58490		360			-0.05629871453788837
TAYGFMQSI	9	Oxidation (M)	_TAYGFM(Oxidation (M))QSI_		TAYGFM(1)QSI		TAYGFM(160)QSI	0	0	1		ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1;ENST00000465624.5_1_3:158537406-158546768:+|nuORF;ENST00000468409.1_1_3:158541222-158542039:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2368774414062	2	517.236593	1032.45863	0.42808	0.00022142	0.14381	7.4383E-05	0.57189	0.0002958	517.2366291719558	54.221	1.0567	54.205	53.764	54.821	-0.015919					99	37	4	0	0	0	5.7257E-07	2	12816	12816;12866		157.8	72.523	1	3046100			47736	2846	27333	27334	58491;58492	58491		360			-0.05629871453788837
TAYPQVVVV	9	Unmodified	_TAYPQVVVV_					0	0	0		nc|ENSG00000166532|Q9ULI2-2|RIMKLB;ENST00000408914.2_1_21:37422526-37423618:+|nuORF;ENSG00000166532|ENST00000535829|RIMKLB	nc|ENSG00000166532|Q9ULI2-2|RIMKLB	nc|ENSG00000166532|Q9ULI2-2|RIMKLB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2790832519531	2	488.279118	974.543683	0.1988	9.7071E-05	0.33425	0.00016321	0.53305	0.00026028	488.279211552734	61.87	1.0138	61.87	61.487	62.501	0					114	37	5	0	0	0	0.05341	3	15172	15172;15178;15223		51.63	26.23	1	3063200			47737	6091	27334	27335	58493;58494;58495	58493					0.055392420743373805
TAYPQVVVV	9	Unmodified	_TAYPQVVVV_					0	0	0		nc|ENSG00000166532|Q9ULI2-2|RIMKLB;ENST00000408914.2_1_21:37422526-37423618:+|nuORF;ENSG00000166532|ENST00000535829|RIMKLB	nc|ENSG00000166532|Q9ULI2-2|RIMKLB	nc|ENSG00000166532|Q9ULI2-2|RIMKLB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.279296875	2	488.279118	974.543683	0.021501	1.0498E-05	0.44632	0.00021793	0.46782	0.00022843	488.2792288604023	61.803	1.1698	61.794	61.451	62.621	-0.0085526					119	42	5	0	0	0	0.018449	2	15193	15143;15193		66.457	30.33	1	3239500			47738	6091	27334	27335	58496;58497	58497					0.055392420743373805
TAYPQVVVV	9	Unmodified	_TAYPQVVVV_					0	0	0		nc|ENSG00000166532|Q9ULI2-2|RIMKLB;ENST00000408914.2_1_21:37422526-37423618:+|nuORF;ENSG00000166532|ENST00000535829|RIMKLB	nc|ENSG00000166532|Q9ULI2-2|RIMKLB	nc|ENSG00000166532|Q9ULI2-2|RIMKLB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	488.279118	974.543683	-0.10835	-5.2905E-05	0.56012	0.0002735	0.45177	0.00022059	488.2792888916449	61.746	1.3465	61.843	61.479	62.826	0.096985	0.0069654	0.00011139	NaN	66.457	125	48	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3103400			47739	6091	27334	27335							0.055392420743373805
TAYPSLRLL	9	Unmodified	_TAYPSLRLL_					0	0	0		ENST00000556382.1_1_15:92977594-92988160:+|nuORF;ENSG00000140557|ENST00000268164|ST8SIA2	ENST00000556382.1_1_15:92977594-92988160:+|nuORF	ENST00000556382.1_1_15:92977594-92988160:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3056030273438	2	517.305667	1032.59678	0.12096	6.2574E-05	-0.16517	-8.5443E-05	-0.044207	-2.2869E-05	517.3055666988578	60.328	0.70802	60.423	60.131	60.839	0.095089					56	25	3	0	0	0	0.1335	1	14715	14715		47.594	0	1	2024400			47740	4318	27335	27336	58498	58498					0.08178619856994374
TAYPSLRLL	9	Unmodified	_TAYPSLRLL_					0	0	0		ENST00000556382.1_1_15:92977594-92988160:+|nuORF;ENSG00000140557|ENST00000268164|ST8SIA2	ENST00000556382.1_1_15:92977594-92988160:+|nuORF	ENST00000556382.1_1_15:92977594-92988160:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.3059692382812	2	517.305667	1032.59678	0.39377	0.0002037	-0.055349	-2.8632E-05	0.33842	0.00017507	517.3055279073911	60.454	0.7509	60.442	60.085	60.836	-0.011486					61	27	3	0	0	0	0.13296	1	14741	14741		33.445	0	1	1921500			47741	4318	27335	27336	58499	58499					0.08178619856994374
TAYYALVV	8	Unmodified	_TAYYALVV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.247314453125	2	450.247286	898.48002	0.20538	9.2471E-05	-0.10071	-4.5343E-05	0.10467	4.7127E-05	450.24711330768565	67.858	0.79419	67.858	67.561	68.355	0					67	28	3	0	0	0	0.033363	3	17088	17034;17088;17138		86.121	35.266	1	1147500			47742	6378	27336	27337	58500;58501;58502	58501					0.026718816372408583
TAYYALVV	8	Unmodified	_TAYYALVV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.24725341796875	2	450.247286	898.48002	0.31419	0.00014146	-0.29933	-0.00013477	0.01486	6.6909E-06	450.2470469597522	67.744	0.91887	67.822	67.546	68.465	0.078041					65	32	3	0	0	0	0.033363	3	17051	16998;17051;17102		86.121	41.714	1	1125800			47743	6378	27336	27337	58503;58504;58505	58504					0.026718816372408583
TAYYALVV	8	Unmodified	_TAYYALVV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2472839355469	2	450.247286	898.48002	0.20049	9.027E-05	-0.10627	-4.7846E-05	0.094225	4.2424E-05	450.2471500329887	67.872	0.83885	67.856	67.593	68.432	-0.016296					61	29	3	0	0	0	0.033363	3	17066	17015;17066;17109		86.121	25.732	1	1125100			47744	6378	27336	27337	58506;58507;58508	58507					0.026718816372408583
TCCDTRGVH	9	Unmodified	_TCCDTRGVH_					0	0	0		ENST00000519592.5_1_8:28196280-28196573:+|nuORF	ENST00000519592.5_1_8:28196280-28196573:+|nuORF	ENST00000519592.5_1_8:28196280-28196573:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.959228515625	2	496.207844	990.401134	0.21001	0.00010421	-0.43133	-0.00021403	-0.22133	-0.00010982	496.2078181582379	95.099	0.058968	95.099	95.052	95.111	0					6	4	2	0	0	0	0.25938	1	25377	25377		4.3292	0	1	35593			47745	11460	27337	27338	58509	58509					-0.0944503693100387
TCDHHCHN	8	Unmodified	_TCDHHCHN_					0	0	0		nc|ENSG00000009724|O00187-2|MASP2;ENSG00000009724|ENST00000400897|MASP2	nc|ENSG00000009724|O00187-2|MASP2	nc|ENSG00000009724|O00187-2|MASP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.6689758300781	2	483.668886	965.323218	0.21021	0.00010167	-1.8391	-0.00088949	-1.6288	-0.00078782	483.6686528017613	27.072	1.4312	27.06	26.772	28.203	-0.01156					109	50	4	0	0	0	0.46022	1	4513	4513		2.3027	0.4585	1	986340			47746	409	27338	27339	58510	58510					-0.160830497963957
TCHSGSDESY	10	Unmodified	_TCHSGSDESY_					0	0	0			REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.1946411132812	2	543.195653	1084.37675	0.59504	0.00032322	-1.6579	-0.00090055	-1.0628	-0.00057733	543.1947229181549	82.486	0.42043	82.486	82.287	82.708	0					26	15	2	0	0	0	0.39745	1	21546	21546		3.9444	1.0552	1	109830	+		47747	13140	27339	27340	58511	58511					-0.16206018603520533
TCHSGSDESY	10	Unmodified	_TCHSGSDESY_					0	0	0			REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	543.195653	1084.37675	0.55803	0.00030312	-1.6199	-0.00087992	-1.0619	-0.0005768	543.1948427393737	82.364	0.58563	82.437	82.215	82.801	0.073097	-0.035148	0.00010635	NaN	3.9444	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135930	+		47748	13140	27339	27340							-0.16206018603520533
TCHSGSDESY	10	Unmodified	_TCHSGSDESY_					0	0	0			REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.195653	1084.37675	0.69173	0.00037575	-1.8792	-0.0010208	-1.1875	-0.00064504	543.1946514057208	82.514	0.51575	82.493	82.278	82.793	-0.020584	0.021173	-0.00017538	NaN	3.9444	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121180	+		47749	13140	27339	27340							-0.16206018603520533
TCLRWLCH	8	Unmodified	_TCLRWLCH_					0	0	0		nc|ENSG00000178821|Q8NDY8-2|TMEM52	nc|ENSG00000178821|Q8NDY8-2|TMEM52	nc|ENSG00000178821|Q8NDY8-2|TMEM52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.248779296875	2	516.249314	1030.48408	-0.087703	-4.5277E-05	-1.3271	-0.00068511	-1.4148	-0.00073039	516.2488080485425	14.658	0.52413	14.591	14.32	14.845	-0.066068					51	18	4	0	0	0	0.34434	1	839	839		0.79363	0	1	541680			47750	12861	27340	27341	58512	58512					-0.029946754123557184
TCPKWKAP	8	Unmodified	_TCPKWKAP_					0	0	0		ENSG00000261701|ENST00000540303|HPR;nc|ENSG00000261701|P00739-2|HPR	ENSG00000261701|ENST00000540303|HPR	ENSG00000261701|ENST00000540303|HPR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2369079589844	2	465.746931	929.479308	0.35183	0.00016387	1.6672	0.00077648	2.019	0.00094035	465.74768310540935	19.901	0.38233	19.846	19.652	20.034	-0.055693					18	13	2	0	0	0	0.34218	1	2429	2429		9.3474	0	1	30117			47751	8662	27341	27342	58513	58513					0.011747637165285596
TCSLSCCLRSW	11	Unmodified	_TCSLSCCLRSW_					0	0	0			REV__ENST00000528379.1_1_11:82708357-82746391:-|nuORF	REV__ENST00000528379.1_1_11:82708357-82746391:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.18463134765625	3	420.184088	1257.53043	0.23601	9.9167E-05	0.58035	0.00024386	0.81636	0.00034302	420.5184866407962	46.593	0.62909	46.645	46.326	46.955	0.052574					47	22	3	0	0	0	0.43149	1	10515	10515		3.5927	1.5067	1	801600	+		47752	19574	27342	27343	58514	58514					-0.08803023363225293
TCSTYYIQDF	10	Unmodified	_TCSTYYIQDF_					0	0	0			REV__nc|ENSG00000145794|Q96KG7-2|MEGF10	REV__nc|ENSG00000145794|Q96KG7-2|MEGF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.7627563476562	2	620.763171	1239.51179	0.4498	0.00027922	-0.25733	-0.00015974	0.19247	0.00011948	620.7629150656327	56.593	1.0323	56.593	56.267	57.299	0					84	38	3	0	0	0	0.27059	2	13556	13556;13607		24.021	0	1	1573800	+		47753	16308	27343	27344	58515;58516	58515					-0.09838538461781354
TCSTYYIQDF	10	Unmodified	_TCSTYYIQDF_					0	0	0			REV__nc|ENSG00000145794|Q96KG7-2|MEGF10	REV__nc|ENSG00000145794|Q96KG7-2|MEGF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.7635498046875	2	620.763171	1239.51179	0.44095	0.00027373	-0.27689	-0.00017189	0.16406	0.00010184	620.762912349011	56.467	0.76436	56.546	56.247	57.011	0.078674					71	28	3	0	0	0	0.31867	1	13599	13599		18.146	0	1	1919500	+		47754	16308	27343	27344	58517	58517					-0.09838538461781354
TCSTYYIQDF	10	Unmodified	_TCSTYYIQDF_					0	0	0			REV__nc|ENSG00000145794|Q96KG7-2|MEGF10	REV__nc|ENSG00000145794|Q96KG7-2|MEGF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.7632446289062	2	620.763171	1239.51179	0.67882	0.00042139	-0.52596	-0.0003265	0.15286	9.4889E-05	620.7627805497349	56.766	1.0669	56.747	56.429	57.495	-0.019081					88	38	3	0	0	0	0.24105	3	13656	13608;13656;13708		27.629	27.629	1	1931200	+		47755	16308	27343	27344	58518;58519;58520	58519					-0.09838538461781354
TCWEVPELE	9	Unmodified	_TCWEVPELE_					0	0	0		ENST00000529983.2_1_12:89918135-89918465:-|nuORF	ENST00000529983.2_1_12:89918135-89918465:-|nuORF	ENST00000529983.2_1_12:89918135-89918465:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8107299804688	2	553.247157	1104.47976	0.53227	0.00029448	-1.9734	-0.0010918	-1.4411	-0.0007973	553.2458495251472	36.013	0.40347	36.099	35.869	36.272	0.08625					28	14	3	0	0	0	0.25202	1	7316	7316		10.824	1.4408	1	413050			47756	11611	27344	27345	58521	58521					-0.06829906144912457
TDAARIME	8	Unmodified	_TDAARIME_					0	0	0			REV__ENSG00000178363|ENST00000315238|CALML3	REV__ENSG00000178363|ENST00000315238|CALML3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2564392089844	2	453.72111	905.427666	-0.014056	-6.3774E-06	-0.35562	-0.00016135	-0.36967	-0.00016773	453.72094090454607	22.624	0.74938	22.536	22.296	23.046	-0.087608					40	26	2	0	0	0	0.34247	1	3334	3334		8.5933	0	1	57036	+		47757	18031	27345	27346	58522	58522					-0.02883024768038922
TDCQLWRV	8	Unmodified	_TDCQLWRV_					0	0	0		ENST00000568056.5_1_17:75082901-75095218:+|nuORF;ENST00000569632.1_1_17:75084894-75095218:+|nuORF	ENST00000568056.5_1_17:75082901-75095218:+|nuORF	ENST00000568056.5_1_17:75082901-75095218:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2926330566406	2	510.750201	1019.48585	0.41667	0.00021281	1.2556	0.00064128	1.6722	0.0008541	510.7510117147158	20.953	0.27976	20.9	20.809	21.088	-0.05291					14	9	2	0	0	0	0.34337	1	2727	2727		5.2307	2.6532	1	22442			47758	11996	27346	27347	58523	58523					-0.023113431227557157
TDDPLPVV	8	Unmodified	_TDDPLPVV_					0	0	0		nc|ENSG00000117245|Q9P2E2|KIF17;ENSG00000117245|ENST00000400463|KIF17;ENST00000477167.5_1_1:20991079-21011627:-|nuORF	nc|ENSG00000117245|Q9P2E2|KIF17	nc|ENSG00000117245|Q9P2E2|KIF17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.2266540527344	2	428.226551	854.438549	-0.084742	-3.6289E-05	0.53541	0.00022928	0.45067	0.00019299	428.2267613853088	61.098	1.6358	61.098	60.577	62.213	0					121	60	4	0	0	0	0.33916	1	14970	14970		26.341	0	1	7408900			47759	2785	27347	27348	58524	58524					0.005507008779090938
TDDPLPVV	8	Unmodified	_TDDPLPVV_					0	0	0		nc|ENSG00000117245|Q9P2E2|KIF17;ENSG00000117245|ENST00000400463|KIF17;ENST00000477167.5_1_1:20991079-21011627:-|nuORF	nc|ENSG00000117245|Q9P2E2|KIF17	nc|ENSG00000117245|Q9P2E2|KIF17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2265319824219	2	428.226551	854.438549	-0.017607	-7.5397E-06	0.40435	0.00017315	0.38675	0.00016562	428.22671741573026	61.026	1.5956	61.016	60.546	62.141	-0.0094566					117	58	3	0	0	0	0.33916	1	14961	14961		26.341	0	1	7508300			47760	2785	27347	27348	58525	58525					0.005507008779090938
TDELLVLLE	9	Unmodified	_TDELLVLLE_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3129272460938	2	522.794798	1043.57504	0.22544	0.00011786	1.0197	0.00053311	1.2452	0.00065097	522.795175327495	24.615	0.43311	24.584	24.4	24.833	-0.031408					25	14	2	0	0	0	0.28128	1	3770	3770		11.64	0	1	174490	+		47761	16705;23038	27348	27349	58526	58526					0.05499770317783259
TDEMTSTTVN	10	Unmodified	_TDEMTSTTVN_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7477416992188	2	549.734611	1097.45467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.246	1	37.333	36.833	37.833	0.08741								0	0	0	0.35216	1	7650	7650		13.906	0	1		+		47762	18137	27349	27350	58527	58527					-0.09016005738158128
TDFIKIEEF	9	Unmodified	_TDFIKIEEF_					0	0	0		ENST00000465553.5_1_X:154508114-154563754:-|nuORF;ENSG00000155962|ENST00000369449|CLIC2	ENST00000465553.5_1_X:154508114-154563754:-|nuORF	ENST00000465553.5_1_X:154508114-154563754:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.3106689453125	2	571.292422	1140.57029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.119	1	87.119	86.619	87.619	0								0	0	0	0.24446	1	22958	22958		8.1555	0	1				47763	5208	27350	27351	58528	58528					0.0056288617497557425
TDFLIFDPK	9	Unmodified	_TDFLIFDPK_					0	0	0		nc|ENSG00000173083|Q9Y251-4|HPSE;nc|ENSG00000173083|Q9Y251-3|HPSE;nc|ENSG00000173083|Q9Y251-2|HPSE;HPSE|p.L516Sfs*18|1|0.15|ENSG00000173083|chr4:83295430-83295430|G/-|frameshift_variant;ENSG00000173083|ENST00000311412|HPSE	nc|ENSG00000173083|Q9Y251-4|HPSE	nc|ENSG00000173083|Q9Y251-4|HPSE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3014526367188	2	548.289682	1094.56481	-0.6387	-0.00035019	-3.0161	-0.0016537	-3.6548	-0.0020039	548.2878518756606	34.606	0.4131	34.606	34.362	34.775	0					31	14	3	0	0	0	0.24581	1	6822	6822		16.942	1.0951	1	253120			47764	6690	27351	27352	58529	58529					0.02131207383195033
TDFLIFDPK	9	Unmodified	_TDFLIFDPK_					0	0	0		nc|ENSG00000173083|Q9Y251-4|HPSE;nc|ENSG00000173083|Q9Y251-3|HPSE;nc|ENSG00000173083|Q9Y251-2|HPSE;HPSE|p.L516Sfs*18|1|0.15|ENSG00000173083|chr4:83295430-83295430|G/-|frameshift_variant;ENSG00000173083|ENST00000311412|HPSE	nc|ENSG00000173083|Q9Y251-4|HPSE	nc|ENSG00000173083|Q9Y251-4|HPSE	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.289682	1094.56481	-0.63581	-0.00034861	-2.9572	-0.0016214	-3.593	-0.00197	548.2880011691623	34.508	0.48824	34.583	34.326	34.814	0.075306	0.033167	0.00037459	NaN	16.942	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268100			47765	6690	27351	27352							0.02131207383195033
TDFLIFDPK	9	Unmodified	_TDFLIFDPK_					0	0	0		nc|ENSG00000173083|Q9Y251-4|HPSE;nc|ENSG00000173083|Q9Y251-3|HPSE;nc|ENSG00000173083|Q9Y251-2|HPSE;HPSE|p.L516Sfs*18|1|0.15|ENSG00000173083|chr4:83295430-83295430|G/-|frameshift_variant;ENSG00000173083|ENST00000311412|HPSE	nc|ENSG00000173083|Q9Y251-4|HPSE	nc|ENSG00000173083|Q9Y251-4|HPSE	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	548.289682	1094.56481	0.062218	3.4114E-05	-3.7366	-0.0020487	-3.6744	-0.0020146	548.2876960202483	34.384	0.59439	34.461	34.11	34.704	0.077377	-0.08899	-0.0004801	NaN	16.942	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291290			47766	6690	27351	27352							0.02131207383195033
TDKCRPWTN	9	Unmodified	_TDKCRPWTN_					0	0	0		nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-3|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-5|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-6|TNFRSF11A;ENSG00000141655|ENST00000586569|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-2|TNFRSF11A	nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A	nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8400268554688	2	560.76384	1119.51313	0.52273	0.00029313	0.63363	0.00035532	1.1564	0.00064845	560.7643415442667	44.764	0.65259	44.764	44.522	45.175	0					32	23	2	0	0	0	0.2322	1	9967	9967		14.838	1.7958	1	133740			47767	4402	27352	27353	58530	58530					-0.041848595823466894
TDKIEHRFVFG	11	Unmodified	_TDKIEHRFVFG_					0	0	0			REV__ENSG00000156298|ENST00000378482|TSPAN7	REV__ENSG00000156298|ENST00000378482|TSPAN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7552795410156	3	450.238455	1347.69353	0.34093	0.0001535	-0.11212	-5.0481E-05	0.22881	0.00010302	450.572637954845	53.438	0.38797	53.438	53.286	53.674	0					31	14	3	0	0	0	0.33025	1	12618	12618		9.2438	2.2067	1	526820	+		47768	16741	27353	27354	58531	58531					0.03359562346122402
TDKIEHRFVFG	11	Unmodified	_TDKIEHRFVFG_					0	0	0			REV__ENSG00000156298|ENST00000378482|TSPAN7	REV__ENSG00000156298|ENST00000378482|TSPAN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.7552490234375	3	450.238455	1347.69353	0.3173	0.00014286	-0.12781	-5.7547E-05	0.18949	8.5313E-05	450.23848809738405	53.738	0.44874	53.729	53.507	53.956	-0.0096054					34	16	3	0	0	0	0.32824	1	12653	12653		12.856	5.8189	1	531440	+		47769	16741	27353	27354	58532	58532					0.03359562346122402
TDKLGEYK	8	Unmodified	_TDKLGEYK_					0	0	0		ENSG00000173575|ENST00000394196|CHD2	ENSG00000173575|ENST00000394196|CHD2	ENSG00000173575|ENST00000394196|CHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7599182128906	2	477.250557	952.486562	0.076135	3.6335E-05	-0.57628	-0.00027503	-0.50015	-0.0002387	477.2503347983224	15.875	0.75091	15.812	15.547	16.298	-0.062533					59	25	4	0	0	0	0.44569	1	1226	1226		7.2892	0	1	341320			47770	6730	27354	27355	58533	58533					0.008417747979478918
TDKSFVEK	8	Unmodified	_TDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.25030517578125	2	477.250557	952.486562	-0.041991	-2.004E-05	-0.60765	-0.00029	-0.64964	-0.00031004	477.25033407887014	15.855	0.65138	15.855	15.591	16.242	0					48	22	3	0	0	0	0.055575	2	1177	1177;1208		75.571	20.068	1	311790			47771	1574;1970;3708	27355	27356	58534;58535	58534					0.008417747979592605
TDKSFVEK	8	Unmodified	_TDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.2502136230469	2	477.250557	952.486562	0.043	2.0522E-05	-0.45762	-0.0002184	-0.41462	-0.00019788	477.2503529685219	15.968	0.64185	15.853	15.605	16.247	-0.11434					63	21	4	0	0	0	0.015889	3	1174	1174;1226;1265		107.56	34.595	1	343230			47772	1574;1970;3708	27355	27356	58536;58537;58538	58536					0.008417747979592605
TDKSFVEK	8	Unmodified	_TDKSFVEK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.2503662109375	2	477.250557	952.486562	0.076135	3.6335E-05	-0.57628	-0.00027503	-0.50015	-0.0002387	477.2503347983224	15.875	0.75091	15.812	15.547	16.298	-0.062533					59	25	4	0	0	0	0.023184	1	1187	1187		97.741	33.781	1	341320			47773	1574;1970;3708	27355	27356	58539	58539					0.008417747979592605
TDLGELRRRP	10	Unmodified	_TDLGELRRRP_					0	0	0		nc|ENSG00000080819|P36551-2|CPOX;ENST00000515041.1_1_3:98309425-98312348:-|nuORF;ENSG00000080819|ENST00000647941|CPOX	nc|ENSG00000080819|P36551-2|CPOX	nc|ENSG00000080819|P36551-2|CPOX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8330688476562	2	606.84401	1211.67347	0.55926	0.00033939	1.8402	0.0011167	2.3994	0.0014561	606.8454316763919	47.413	0.37994	47.466	47.271	47.651	0.052574					21	13	2	0	0	0	0.31629	1	10813	10813		10.074	4.3421	1	165780			47774	1166	27356	27357	58540	58540					0.07609811406155131
TDLLVLTHE	9	Unmodified	_TDLLVLTHE_					0	0	0			REV__ENST00000370482.6_1_1:89479706-89486410:-|nuORF	REV__ENST00000370482.6_1_1:89479706-89486410:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2684936523438	2	520.784764	1039.55498	0.34321	0.00017874	-0.36584	-0.00019052	-0.022629	-1.1785E-05	521.2857967514408	32.916	0.13588	32.97	32.877	33.013	0.054371					6	4	2	0	0	0	0.2451	1	6317	6317		15.847	2.8047	1	75148	+		47775	14960	27357	27358	58541	58541					0.03678019377821329
TDNLVIIW	8	Unmodified	_TDNLVIIW_					0	0	0		ENSG00000150627|ENST00000508596|WDR17;nc|ENSG00000150627|Q8IZU2|WDR17	ENSG00000150627|ENST00000508596|WDR17	ENSG00000150627|ENST00000508596|WDR17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.75384521484375	2	487.271293	972.528032	0.098321	4.7909E-05	-3.8358	-0.0018691	-3.7375	-0.0018212	487.26930537970054	15.724	0.42481	15.66	15.517	15.942	-0.064413					23	14	2	0	0	0	0.3439	1	1086	1086		2.8892	0	1	47906			47776	4918	27358	27359	58542	58542					0.04066955557277652
TDQKLEEY	8	Unmodified	_TDQKLEEY_					0	0	0			REV__ENSG00000105398|ENST00000222002|SULT2A1	REV__ENSG00000105398|ENST00000222002|SULT2A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2908935546875	2	513.242929	1024.47131	0.35894	0.00018423	0.28012	0.00014377	0.63906	0.00032799	513.2431984066807	21.667	0.43532	21.567	21.338	21.773	-0.10034					32	15	3	0	0	0	0.34092	1	2919	2919		13.508	0	1	70469	+		47777	14455	27359	27360	58543	58543					-0.03995136789899334
TDRDEIQEQGS	11	Unmodified	_TDRDEIQEQGS_					0	0	0			REV__ENST00000538236.1_1_12:123345166-123345832:+|nuORF	REV__ENST00000538236.1_1_12:123345166-123345832:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	639.2843017578125	2	639.283845	1276.55314	0.42693	0.00027293	-0.59948	-0.00038324	-0.17255	-0.00011031	639.2835335236942	22.919	0.40556	22.874	22.679	23.084	-0.044867					30	14	3	0	0	0	0.46655	1	3273	3273		2.4985	0	1	78870	+		47778	15478	27360	27361	58544	58544					-0.07407686168767214
TDRELKSYSF	10	Unmodified	_TDRELKSYSF_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.89422607421875	3	415.875182	1244.60372	0.23894	9.937E-05	-1.4933	-0.00062105	-1.2544	-0.00052168	415.87405886162236	24.106	0.56924	24.067	23.681	24.25	-0.038927					23	19	2	0	0	0	0.31926	1	3581	3581		3.0723	1.33	1	52016	+		47779	18154	27361	27362	58545	58545					-0.00880112053096127
TDRFAFQL	8	Unmodified	_TDRFAFQL_					0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.25909423828125	2	499.258717	996.50288	0.3498	0.00017464	0.040913	2.0426E-05	0.39071	0.00019506	499.2593247082668	55.403	3.3198	55.403	55.008	58.328	0					295	121	5	0	0	0	0.3474	1	13540	13540		25.399	0	1	73217000			47780	656	27362	27363	58546	58546					0.004489007547249457
TDRFAFQL	8	Unmodified	_TDRFAFQL_					0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2589111328125	2	499.258717	996.50288	0.59054	0.00029483	-0.14228	-7.1036E-05	0.44826	0.0002238	499.2592235829054	55.339	3.2094	55.41	55.028	58.237	0.070885					312	118	5	0	0	0	0.3474	2	13514	13514;13618		25.399	0	1	75175000			47781	656	27362	27363	58547;58548	58547					0.004489007547249457
TDRFAFQL	8	Unmodified	_TDRFAFQL_					0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2587585449219	2	499.258717	996.50288	0.4366	0.00021798	0.15385	7.681E-05	0.59045	0.00029479	499.25932322991264	55.574	3.1721	55.555	55.181	58.353	-0.019077					283	116	5	0	0	0	0.3474	1	13632	13632		25.399	0	1	84053000			47782	656	27362	27363	58549	58549					0.004489007547249457
TDRKPALSCT	10	Unmodified	_TDRKPALSCT_					0	0	0		ENSG00000113749|ENST00000636584|HRH2	ENSG00000113749|ENST00000636584|HRH2	ENSG00000113749|ENST00000636584|HRH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.3197021484375	2	546.279323	1090.54409	0.31455	0.00017183	1.8098	0.00098865	2.1243	0.0011605	546.2802681367102	81.064	0.23732	81.129	81.023	81.261	0.065094					12	11	2	0	0	0	0.31515	1	21082	21082		8.1555	0.24537	1	42307			47783	2529	27363	27364	58550	58550					0.002442937318846816
TDRLAIQF	8	Unmodified	_TDRLAIQF_					0	0	0		ENSG00000182492|ENST00000331595|BGN	ENSG00000182492|ENST00000331595|BGN	ENSG00000182492|ENST00000331595|BGN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7784729003906	2	482.266542	962.51853	0.041848	2.0182E-05	0.45366	0.00021878	0.4955	0.00023896	482.26673808426034	16.909	0.56675	16.795	16.695	17.262	-0.11434					33	20	2	0	0	0	0.45307	1	1503	1503		4.756	2.4533	1	62070			47784	7295	27364	27365	58551	58551					0.03577187271764615
TDRLAIQF	8	Unmodified	_TDRLAIQF_					0	0	0		ENSG00000182492|ENST00000331595|BGN	ENSG00000182492|ENST00000331595|BGN	ENSG00000182492|ENST00000331595|BGN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.77862548828125	2	482.266542	962.51853	0.32905	0.00015869	0.076764	3.7021E-05	0.40582	0.00019571	482.26650365993123	16.893	0.47592	16.83	16.674	17.149	-0.062534					31	17	2	0	0	0	0.44389	1	1481	1481		7.9102	3.1541	1	55688			47785	7295	27364	27365	58552	58552					0.03577187271764615
TDRLAIQF	8	Unmodified	_TDRLAIQF_					0	0	0		ENSG00000182492|ENST00000331595|BGN	ENSG00000182492|ENST00000331595|BGN	ENSG00000182492|ENST00000331595|BGN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	482.266542	962.51853	0.1541	7.4317E-05	0.33923	0.0001636	0.49333	0.00023792	482.2666895120047	16.825	0.5534	16.825	16.689	17.242	0	0.0084467	5.2738E-05	NaN	7.9102	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46235			47786	7295	27364	27365							0.03577187271764615
TDRPVFFLAF	10	Unmodified	_TDRPVFFLAF_					0	0	0			REV__ENST00000369146.7_1_1:149885499-149885547:-|nuORF	REV__ENST00000369146.7_1_1:149885499-149885547:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.8389587402344	3	404.885241	1211.63389	0.13734	5.5606E-05	-2.6725	-0.001082	-2.5351	-0.0010264	405.2183154506783	33.714	0.40739	33.714	33.484	33.891	0					27	14	3	0	0	0	0.32033	1	6501	6501		2.086	0.17963	1	173960	+		47787	20352	27365	27366	58553	58553					0.0365429140276774
TDRRLRPVAK	10	Unmodified	_TDRRLRPVAK_					0	0	0			REV__ENSG00000183760|ENST00000331256|ACP7	REV__ENSG00000183760|ENST00000331256|ACP7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3696899414062	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.49	1	113.49	112.99	113.99	0								0	0	0	0.38206	1	29476	29476		0	0	1		+		47788	18281	27366	27367	58554	58554					0.12890394539795125
TDSCNCDCLTH	11	Unmodified	_TDSCNCDCLTH_					0	0	0			REV__ENST00000548269.1_1_12:53587490-53588125:-|nuORF	REV__ENST00000548269.1_1_12:53587490-53588125:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.0214233398438	2	606.209923	1210.40529	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.668	1	99.719	99.219	100.22	0.050888								0	0	0	0.38114	1	26653	26653		1.3295	0.87119	1		+		47789	15997	27367	27368	58555	58555					-0.19149360290271034
TDSSPSHSK	9	Unmodified	_TDSSPSHSK_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.21722412109375	2	473.217246	944.419939	-0.1823	-8.6269E-05	0.32408	0.00015336	0.14178	6.7092E-05	473.2173004756397	15.082	0.59779	15.082	14.9	15.498	0					32	20	2	0	0	0	0.24289	1	924	924		18.146	1.0335	1	260460	+		47790	15815	27368	27369	58556	58556					-0.05449460763941261
TDSSPSHSK	9	Unmodified	_TDSSPSHSK_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.21722412109375	2	473.217246	944.419939	-0.0075923	-3.5928E-06	0.22644	0.00010716	0.21885	0.00010356	473.2172425307346	15.193	0.50245	15.083	14.905	15.408	-0.10981					30	17	2	0	0	0	0.24289	1	950	950		18.146	1.0335	1	248610	+		47791	15815	27368	27369	58557	58557					-0.05449460763941261
TDSSPSHSK	9	Unmodified	_TDSSPSHSK_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.2023010253906	2	473.217246	944.419939	-0.058938	-2.789E-05	0.27895	0.00013201	0.22002	0.00010412	473.21730634599623	15.209	0.65282	15.144	14.984	15.636	-0.064413					33	21	2	0	0	0	0.24289	1	941	941		18.146	1.0335	1	292770	+		47792	15815	27368	27369	58558	58558					-0.05449460763941261
TDTLRPRESN	10	Unmodified	_TDTLRPRESN_					0	0	0			REV__nc|ENSG00000175354|P17706-3|PTPN2	REV__nc|ENSG00000175354|P17706-3|PTPN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.8231811523438	2	594.802008	1187.58946	0.63827	0.00037964	0.48649	0.00028937	1.1248	0.00066901	594.802488298802	50.956	0.42706	51.003	50.794	51.221	0.046574					22	15	2	0	0	0	0.31143	1	11792	11792		12.241	0	1	288760	+		47793	23095	27369	27370	58559	58559					0.003172355186279674
TDTTAEHYL	9	Unmodified	_TDTTAEHYL_					0	0	0			REV__nc|ENSG00000175606|Q9BUB7-2|TMEM70	REV__nc|ENSG00000175606|Q9BUB7-2|TMEM70	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2923583984375	2	525.740554	1049.46655	0.36098	0.00018978	-0.825	-0.00043374	-0.46403	-0.00024396	525.7397895658487	18.413	0.8182	18.413	18.077	18.895	0					60	28	4	0	0	0	0.25526	1	1995	1995		7.9102	0	1	60557	+		47794	17902	27370	27371	58560	58560					-0.05620020932656189
TDTTAEHYL	9	Unmodified	_TDTTAEHYL_					0	0	0			REV__nc|ENSG00000175606|Q9BUB7-2|TMEM70	REV__nc|ENSG00000175606|Q9BUB7-2|TMEM70	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2923583984375	2	525.740554	1049.46655	0.27882	0.00014659	-1.3281	-0.00069824	-1.0493	-0.00055165	525.7399091505921	18.606	0.80018	18.489	18.117	18.918	-0.11739					36	27	2	0	0	0	0.25526	1	2035	2035		7.9102	0	1	51653	+		47795	17902	27370	27371	58561	58561					-0.05620020932656189
TDTTAEHYL	9	Unmodified	_TDTTAEHYL_					0	0	0			REV__nc|ENSG00000175606|Q9BUB7-2|TMEM70	REV__nc|ENSG00000175606|Q9BUB7-2|TMEM70	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	525.740554	1049.46655	0.1637	8.6064E-05	-1.6253	-0.00085449	-1.4616	-0.00076843	525.7400877759013	18.495	0.72863	18.437	18.145	18.873	-0.058174	-0.0091514	-0.00029926	NaN	7.9102	42	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72388	+		47796	17902	27370	27371							-0.05620020932656189
TDVEREMKTL	10	Unmodified	_TDVEREMKTL_					0	0	0			REV__ENST00000466059.5_1_3:112989541-112990141:+|nuORF	REV__ENST00000466059.5_1_3:112989541-112990141:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.55340576171875	3	407.876306	1220.60709	-0.27671	-0.00011286	-2.5918	-0.0010571	-2.8685	-0.00117	407.8755154832109	31.244	0.39131	31.286	31.183	31.574	0.042364					20	13	2	0	0	0	0.31289	1	5807	5807		12.175	0	1	124140	+		47797	21281	27371	27372	58562	58562					0.005608147292605281
TDWFKLTK	8	Unmodified	_TDWFKLTK_					0	0	0			REV__ENSG00000101146|ENST00000395841|RAE1	REV__ENSG00000101146|ENST00000395841|RAE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2162475585938	2	519.784567	1037.55458	0.35302	0.00018349	-4.3436	-0.0022577	-3.9906	-0.0020742	519.7820305790626	32.644	0.81746	32.698	32.441	33.258	0.054371					41	29	2	0	0	0	0.34272	1	6171	6171		7.9102	0.62092	1	292550	+		47798	14248	27372	27373	58563	58563					0.037306444486148393
TDWGIQYTK	9	Unmodified	_TDWGIQYTK_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7962036132812	2	556.274564	1110.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.98	1	118.95	118.45	119.45	-0.024147								0	0	0	0.264	1	30729	30729		1.8442	0	1		+		47799	14737	27373	27374	58564	58564					-0.016271512820139833
TDWQEWNSTL	10	Unmodified	_TDWQEWNSTL_					0	0	0			REV__ENSG00000164463|ENST00000296953|CREBRF	REV__ENSG00000164463|ENST00000296953|CREBRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.28369140625	2	640.283117	1278.55168	0.22904	0.00014665	0.70929	0.00045414	0.93833	0.0006008	640.2836613805932	61.195	1.011	61.195	60.88	61.891	0					87	37	3	0	0	0	0.24548	2	15038	15038;15094		38.176	10.854	1	1184300	+		47800	17159	27374	27375	58565;58566	58565					-0.07645275466848034
TDWQEWNSTL	10	Unmodified	_TDWQEWNSTL_					0	0	0			REV__ENSG00000164463|ENST00000296953|CREBRF	REV__ENSG00000164463|ENST00000296953|CREBRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.2833862304688	2	640.283117	1278.55168	0.28315	0.00018129	0.64556	0.00041334	0.92871	0.00059464	640.2836095192661	61.198	1.0263	61.295	60.925	61.952	0.096985					89	37	3	0	0	0	0.3036	1	15010	15010		28.495	9.2375	1	1445800	+		47801	17159	27374	27375	58567	58567					-0.07645275466848034
TDWQEWNSTL	10	Unmodified	_TDWQEWNSTL_					0	0	0			REV__ENSG00000164463|ENST00000296953|CREBRF	REV__ENSG00000164463|ENST00000296953|CREBRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.8372802734375	2	640.283117	1278.55168	0.28315	0.00018129	0.64556	0.00041334	0.92871	0.00059464	640.2836095192661	61.198	1.0263	61.295	60.925	61.952	0.096985					89	37	3	0	0	0	0.27979	1	14941	14941		27.629	10.516	1	1445800	+		47802	17159	27374	27375	58568	58568					-0.07645275466848034
TDWQEWNSTL	10	Unmodified	_TDWQEWNSTL_					0	0	0			REV__ENSG00000164463|ENST00000296953|CREBRF	REV__ENSG00000164463|ENST00000296953|CREBRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.2836303710938	2	640.283117	1278.55168	0.34562	0.0002213	0.61968	0.00039677	0.9653	0.00061807	640.2835614745267	61.257	1.0345	61.247	60.944	61.978	-0.0094566					85	37	3	0	0	0	0.24548	1	15072	15072		38.176	14.155	1	1774500	+		47803	17159	27374	27375	58569	58569					-0.07645275466848034
TEAIILVQKAE	11	Unmodified	_TEAIILVQKAE_					0	0	0		ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.329833984375	2	607.853178	1213.6918	0.45859	0.00027876	1.4121	0.00085834	1.8707	0.0011371	607.8539153086468	32.851	0.43241	32.851	32.633	33.065	0					23	14	3	0	0	0	0.33112	1	6322	6322		13.615	13.615	1	169420			47804	8746	27375	27376	58570	58570					0.09350508537522728
TEAPLNPK	8	Unmodified	_TEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ACTG1|p.L104V|1|0.09|ENSG00000184009|chr17:81511956-81511956|G/C|missense_variant;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8420715332031	2	435.239993	868.465432	0.16287	7.0889E-05	-1.4937	-0.00065012	-1.3308	-0.00057923	435.2392559905017	20.789	0.73628	20.736	20.525	21.261	-0.052912					48	25	3	0	0	0	0.32435	1	2636	2636		23.148	0	1	182540			47805	1050;2147	27376	27377	58571	58571					0.025938094890989305
TEAPLNPK	8	Unmodified	_TEAPLNPK_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000567299.1_1_19:9629420-9629708:+|nuORF;ACTG1|p.L104V|1|0.09|ENSG00000184009|chr17:81511956-81511956|G/C|missense_variant;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000163017|ENST00000345517|ACTG2	ENSG00000075624|ENST00000646664|ACTB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	435.239993	868.465432	0.30002	0.00013058	-1.7547	-0.00076371	-1.4547	-0.00063313	435.23899845449245	20.86	0.56987	20.75	20.581	21.15	-0.11003	0.024769	-8.351E-05	NaN	23.148	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195310			47806	1050;2147	27376	27377							0.025938094890989305
TEAVVIEKIT	10	Unmodified	_TEAVVIEKIT_					0	0	0		ENSG00000214595|ENST00000356458|EML6	ENSG00000214595|ENST00000356458|EML6	ENSG00000214595|ENST00000356458|EML6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2835693359375	2	551.821347	1101.62814	0.78433	0.00043281	0.37289	0.00020577	1.1572	0.00063858	551.8210206173471	33.546	0.52371	33.612	33.38	33.904	0.06636					30	18	2	0	0	0	0.31847	1	6550	6550		6.7232	0	1	174090			47807	8386	27377	27378	58572	58572					0.08139148100440252
TEDATSAYIS	10	Unmodified	_TEDATSAYIS_					0	0	0		ENSG00000176244|ENST00000356189|ACBD7	ENSG00000176244|ENST00000356189|ACBD7	ENSG00000176244|ENST00000356189|ACBD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2373657226562	2	529.237844	1056.46113	0.1997	0.00010569	-0.70582	-0.00037355	-0.50613	-0.00026786	529.2374686094555	61.217	0.97099	61.314	60.896	61.867	0.096985					59	35	2	0	0	0	0.34795	2	14961	14961;15132		13.042	3.6593	1	1305700			47808	6912	27378	27379	58573;58574	58573					-0.06483744515139733
TEDLEELDTF	10	Unmodified	_TEDLEELDTF_					0	0	0			REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.8721923828125	2	606.269341	1210.52413	0.44872	0.00027205	-1.4386	-0.00087217	-0.98987	-0.00060013	606.2680435246715	90.138	0.75407	90.139	89.795	90.549	0.0003891					124	59	3	0	0	0	0.32033	1	23881	23881		3.5965	0	1	189870	+		47809	16034	27379	27380	58575	58575					-0.07271223517773251
TEEDYEELIA	10	Unmodified	_TEEDYEELIA_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.2689208984375	2	606.269341	1210.52413	0.28748	0.00017429	-1.3953	-0.00084595	-1.1078	-0.00067165	606.2687225663672	16.607	0.50409	16.493	16.219	16.723	-0.11434					51	17	4	0	0	0	0.40992	1	1433	1433		1.6526	0.85899	1	183200	+		47810	15644	27380	27381	58576	58576					-0.07271223517750514
TEELDEPSLA	10	Unmodified	_TEELDEPSLA_					0	0	0			REV__ENST00000420969.1_1_2:162360026-162361742:-|nuORF	REV__ENST00000420969.1_1_2:162360026-162361742:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2411499023438	2	552.258776	1102.503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.578	1	23.539	23.039	24.039	-0.038927								0	0	0	0.36922	1	3488	3488		6.7232	0.99131	1		+		47811	20860	27381	27382	58577	58577					-0.044151888266014794
TEEQYRIRQ	9	Unmodified	_TEEQYRIRQ_					0	0	0		nc|ENSG00000096093|Q5JVL4-2|EFHC1;nc|ENSG00000096093|Q5JVL4-3|EFHC1;ENSG00000096093|ENST00000371068|EFHC1	nc|ENSG00000096093|Q5JVL4-2|EFHC1	nc|ENSG00000096093|Q5JVL4-2|EFHC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.210693359375	3	408.210676	1221.6102	-0.086019	-3.5114E-05	0.35936	0.00014669	0.27334	0.00011158	408.2107821467117	17.151	0.79448	17.151	16.952	17.746	0					64	27	4	0	0	0	0.31479	1	1552	1552		6.6304	0.76223	1	371000			47812	1465	27382	27383	58578	58578					0.008258258982777988
TEESNSCDEII	11	Unmodified	_TEESNSCDEII_					0	0	0			REV__ENSG00000124486|ENST00000378308|USP9X	REV__ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.2562255859375	2	620.255908	1238.49726	0.19893	0.00012339	0.8083	0.00050135	1.0072	0.00062474	620.2563969771926	59.162	0.61887	59.162	58.941	59.56	0					45	21	3	0	0	0	0.38187	1	14380	14380		13.615	6.5131	1	390470	+		47813	15234	27383	27384	58579	58579					-0.11244655400582815
TEIEFPEK	8	Unmodified	_TEIEFPEK_					0	0	0		nc|ENSG00000197415|Q14D04-2|VEPH1;ENSG00000197415|ENST00000362010|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.76727294921875	2	496.75039	991.486227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.862	1	18.862	18.362	19.362	0								0	0	0	0.37724	1	2060	2060		2.3027	0	1				47814	7961	27384	27385	58580	58580					-0.009856449219000751
TEIELRKRV	9	Unmodified	_TEIELRKRV_					0	0	0		ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3455810546875	2	572.345855	1142.67716	-0.07142	-4.0877E-05	-0.14625	-8.3703E-05	-0.21767	-0.00012458	572.3458302604186	14.482	0.34042	14.482	14.335	14.676	0					17	11	2	0	0	0	0.33508	1	765	765		3.5965	0	1	54524			47815	6012	27385	27386	58581	58581					0.11152481180010909
TEIELRKRV	9	Unmodified	_TEIELRKRV_					0	0	0		ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	572.345855	1142.67716	-0.07142	-4.0877E-05	-0.14625	-8.3703E-05	-0.21767	-0.00012458	572.3458302604186	14.482	0.34042	14.482	14.335	14.676	0	-0.038435	-0.00019676	NaN	3.5965	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54524			47816	6012	27385	27386							0.11152481180010909
TEIELRKRV	9	Unmodified	_TEIELRKRV_					0	0	0		ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	572.345855	1142.67716	0.073165	4.1876E-05	0.12169	6.9651E-05	0.19486	0.00011153	572.3458133593919	14.612	0.25562	14.507	14.368	14.623	-0.10466	-0.013086	0.00010995	NaN	3.5965	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60621			47817	6012	27385	27386							0.11152481180010909
TEIELRKRV	9	Unmodified	_TEIELRKRV_					0	0	0		ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	572.345855	1142.67716	-0.076814	-4.3964E-05	0.2633	0.0001507	0.18649	0.00010673	572.3459673726611	14.638	0.24564	14.572	14.427	14.672	-0.066067	0.051522	0.00027204	NaN	3.5965	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46963			47818	6012	27385	27386							0.11152481180010909
TEIFIHSL	8	Unmodified	_TEIFIHSL_					0	0	0		nc|ENSG00000141506|Q8WYR1-2|PIK3R5;ENST00000578515.5_1_17:8785060-8814811:-|nuORF;ENSG00000141506|ENST00000447110|PIK3R5	nc|ENSG00000141506|Q8WYR1-2|PIK3R5	nc|ENSG00000141506|Q8WYR1-2|PIK3R5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.77716064453125	2	480.263468	958.512382	0.29003	0.00013929	-3.5214	-0.0016912	-3.2314	-0.0015519	480.26200176756436	36.216	0.40009	36.216	35.932	36.332	0					19	14	2	0	0	0	0.34131	1	7341	7341		12.532	0.89125	1	169890			47819	4387	27386	27387	58582	58582					0.031466690402339736
TEILYEFA	8	Unmodified	_TEILYEFA_					0	0	0			REV__nc|ENSG00000136381|P48200-2|IREB2	REV__nc|ENSG00000136381|P48200-2|IREB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.5950927734375	2	493.247483	984.480414	0.49222	0.00024279	-0.30684	-0.00015135	0.18538	9.1437E-05	493.2472710852193	21.143	0.63403	21.143	20.853	21.487	0					32	21	2	0	0	0	0.34319	1	2690	2690		5.7604	0	1	55058	+		47820	15807	27387	27388	58583	58583					-0.012447434335740581
TEKKRLQQHI	10	Unmodified	_TEKKRLQQHI_					0	0	0		nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	nc|ENSG00000105357|Q7Z406|MYH14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.8743286132812	2	640.875311	1279.73607	0.17423	0.00011166	-1.0073	-0.00064556	-0.83308	-0.0005339	640.8746587630847	95.193	0.67382	95.193	94.817	95.491	0					78	60	2	0	0	0	0.41673	1	25484	25484		0.40072	0	1	80577			47821	1970	27388	27389	58584	58584					0.10738957474359268
TEKLALEQQ	9	Unmodified	_TEKLALEQQ_					0	0	0			REV__nc|ENSG00000115419|O94925-3|GLS	REV__nc|ENSG00000115419|O94925-3|GLS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.312255859375	2	530.287671	1058.56079	0.6875	0.00036457	1.1648	0.00061769	1.8523	0.00098226	530.2884784576612	20.038	0.32826	19.982	19.762	20.09	-0.055693					15	11	2	0	0	0	0.24848	1	2391	2391		13.906	0	1	43892	+		47822	22960	27389	27390	58585	58585					0.03385117889456524
TEKVRRWGSL	10	Unmodified	_TEKVRRWGSL_					0	0	0			REV__ENST00000300952.6_1_19:1257468-1257951:+|nuORF	REV__ENST00000300952.6_1_19:1257468-1257951:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2350158691406	3	411.235045	1230.6833	-0.16426	-6.7549E-05	0.0061229	2.5179E-06	-0.15814	-6.5031E-05	411.235014106967	38.271	0.80946	38.271	38.034	38.844	0					73	28	4	0	0	0	0.28078	1	7971	7971		22.775	3.631	1	1511200	+		47823	19816	27390	27391	58586	58586					0.0771899941155425
TEKVRRWGSL	10	Unmodified	_TEKVRRWGSL_					0	0	0			REV__ENST00000300952.6_1_19:1257468-1257951:+|nuORF	REV__ENST00000300952.6_1_19:1257468-1257951:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2349853515625	3	411.235045	1230.6833	0.1038	4.2687E-05	-0.39506	-0.00016246	-0.29125	-0.00011977	411.2348954249342	38.18	0.82943	38.278	37.953	38.782	0.097527					78	29	4	0	0	0	0.28078	2	7912	7912;7955		22.775	3.631	1	1227400	+		47824	19816	27390	27391	58587;58588	58587					0.0771899941155425
TEKVRRWGSL	10	Unmodified	_TEKVRRWGSL_					0	0	0			REV__ENST00000300952.6_1_19:1257468-1257951:+|nuORF	REV__ENST00000300952.6_1_19:1257468-1257951:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	411.235045	1230.6833	0.1038	4.2687E-05	-0.39506	-0.00016246	-0.29125	-0.00011977	411.2348954249342	38.18	0.82943	38.278	37.953	38.782	0.097527	0.0035204	-0.00025474	NaN	22.775	78	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1227400	+		47825	19816	27390	27391							0.0771899941155425
TEKYTGSK	8	Unmodified	_TEKYTGSK_					0	0	0			REV__nc|ENSG00000121931|Q5T3J3-2|LRIF1	REV__nc|ENSG00000121931|Q5T3J3-2|LRIF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7686462402344	2	457.234907	912.455261	-0.21102	-9.6487E-05	1.6283	0.00074452	1.4173	0.00064803	457.235327143974	14.212	0.25172	14.212	14.113	14.365	0					13	8	2	0	0	0	0.34353	1	667	667		4.756	0	1	13001	+		47826	15136	27391	27392	58589	58589					-0.004467982361234135
TELERRYQKA	10	Unmodified	_TELERRYQKA_					0	0	0			REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000151914|Q03001-3|DST	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.3486328125	2	647.349126	1292.6837	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.37	1	104.38	103.88	104.88	0.0011444								0	0	0	0.37664	1	27744	27744		3.5965	0	1		+		47827	23032	27392	27393	58590	58590					0.04906374340748698
TELHRRLKSP	10	Unmodified	_TELHRRLKSP_					0	0	0			REV__ENSG00000236287|ENST00000413761|ZBED5	REV__ENSG00000236287|ENST00000413761|ZBED5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.8609008789062	2	618.862203	1235.70985	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.468	1	93.555	93.055	94.055	0.08667								0	0	0	0.38166	1	24894	24894		1.4819	0	1		+		47828	19149	27393	27394	58591	58591					0.10142688302880742
TELINDRLK	9	Unmodified	_TELINDRLK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;ENST00000475726.5_1_22:36680347-36682008:-|nuORF;ENST00000486218.1_1_22:36680427-36682008:-|nuORF	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.853271484375	2	551.316763	1100.61897	0.50469	0.00027824	-0.032102	-1.7699E-05	0.47258	0.00026054	551.3167865717027	51.297	0.64756	51.307	50.913	51.561	0.0095634					53	24	3	0	0	0	0.22596	1	11908	11908		15.847	1.0089	1	699280			47829	1574	27394	27395	58592	58592					0.07268799534745085
TELINDRLK	9	Unmodified	_TELINDRLK_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;ENST00000475726.5_1_22:36680347-36682008:-|nuORF;ENST00000486218.1_1_22:36680427-36682008:-|nuORF	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	551.316763	1100.61897	0.55383	0.00030534	-0.2393	-0.00013193	0.31453	0.00017341	551.3167358377253	51.248	0.58739	51.248	50.949	51.536	0	-0.036684	-7.1041E-05	NaN	15.847	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	691670			47830	1574	27394	27395							0.07268799534745085
TELSRIKY	8	Unmodified	_TELSRIKY_					0	0	0		ENSG00000119636|ENST00000394009|BBOF1	ENSG00000119636|ENST00000394009|BBOF1	ENSG00000119636|ENST00000394009|BBOF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3006896972656	2	505.287474	1008.5604	-0.027825	-1.4059E-05	-0.066095	-3.3397E-05	-0.09392	-4.7457E-05	505.2878543935333	12.83	0.78844	12.83	12.669	13.457	0					88	27	4	0	0	0	0.46022	1	356	356		2.3027	0	1	4521300			47831	2889	27395	27396	58593	58593					0.056457429602687625
TELSSLPYT	9	Unmodified	_TELSSLPYT_					0	0	0			REV__ENST00000536884.1_1_14:23355236-23355563:+|nuORF	REV__ENST00000536884.1_1_14:23355236-23355563:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.3006286621094	2	505.755672	1009.49679	-0.087808	-4.4409E-05	0.59593	0.00030139	0.50812	0.00025698	505.75570352625897	13.226	0.19876	13.158	13.047	13.245	-0.067496					10	6	2	0	0	0	0.25622	1	371	371		7.2892	1.0834	1	22926	+		47832	22086	27396	27397	58594	58594					-0.00757662267460546
TELTTFSTEVF	11	Unmodified	_TELTTFSTEVF_					0	0	0			REV__CPN2|p.Q421Rfs*18|1|0.11|ENSG00000178772|chr3:194341442-194341442|G/-|frameshift_variant	REV__CPN2|p.Q421Rfs*18|1|0.11|ENSG00000178772|chr3:194341442-194341442|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.8113403320312	2	637.811176	1273.6078	0.66195	0.0004222	0.29519	0.00018828	0.95714	0.00061048	637.8112078305626	85.703	2.1865	85.787	85.001	87.188	0.084251					155	85	2	0	0	0	0.46475	1	22388	22388		2.7352	0	1	480260	+		47833	13284	27397	27398	58595	58595					-0.01806067350048579
TELVHVAT	8	Unmodified	_TELVHVAT_					0	0	0			REV__ENSG00000112234|ENST00000369244|FBXL4	REV__ENSG00000112234|ENST00000369244|FBXL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8824157714844	2	435.239993	868.465432	0.033204	1.4452E-05	-1.8282	-0.0007957	-1.795	-0.00078125	435.2392044898173	20.69	0.68521	20.69	20.423	21.108	0					55	23	3	0	0	0	0.34272	1	2573	2573		7.9102	3.9658	1	160590	+		47834	14764	27398	27399	58596	58596					0.025938094890989305
TENKGKMFI	9	Unmodified	_TENKGKMFI_					0	0	0			REV__ENST00000548390.5_1_12:51442139-51443111:+|nuORF	REV__ENST00000548390.5_1_12:51442139-51443111:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2822875976562	2	534.281334	1066.54812	0.71878	0.00038403	0.47371	0.00025309	1.1925	0.00063712	534.2814653669639	84.734	1.1607	84.734	84.23	85.39	0					50	43	2	0	0	0	0.28674	1	22245	22245		10.824	4.1008	1	306810	+		47835	22187	27399	27400	58597	58597					0.017503832255897578
TENKGKMFI	9	Unmodified	_TENKGKMFI_					0	0	0			REV__ENST00000548390.5_1_12:51442139-51443111:+|nuORF	REV__ENST00000548390.5_1_12:51442139-51443111:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	534.281334	1066.54812	0.71878	0.00038403	0.47371	0.00025309	1.1925	0.00063712	534.2814653669639	84.734	1.1607	84.734	84.23	85.39	0	0	0	NaN	10.824	50	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306810	+		47836	22187	27399	27400							0.017503832255897578
TENNFTMEY	9	Unmodified	_TENNFTMEY_					0	0	0			REV__ENSG00000132383|ENST00000254719|RPA1	REV__ENSG00000132383|ENST00000254719|RPA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2855834960938	2	574.731871	1147.44919	0.30097	0.00017298	-3.0412	-0.0017479	-2.7402	-0.0015749	574.7297311570437	26.877	0.083906	26.855	26.813	26.897	-0.021412					4	2	2	0	0	0	0.26168	1	4487	4487		1.8442	0.36234	1	28150	+		47837	15568	27400	27401	58598	58598					-0.11863684529953389
TEPIVLDSLKQ	11	Unmodified	_TEPIVLDSLKQ_					0	0	0		ENST00000577255.1_1_18:24039580-24056655:-|nuORF;nc|ENSG00000153885|Q96SI1-2|KCTD15;nc|ENSG00000134504|Q719H9|KCTD1;ENSG00000153885|ENST00000683859|KCTD15;ENSG00000134504|ENST00000580059|KCTD1	ENST00000577255.1_1_18:24039580-24056655:-|nuORF	ENST00000577255.1_1_18:24039580-24056655:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.2364196777344	3	414.902849	1241.68672	0.28114	0.00011665	-0.38856	-0.00016121	-0.10741	-4.4566E-05	414.90294800203577	38.638	1.737	38.729	38.011	39.748	0.090881					186	62	4	0	0	0	0.45822	1	8139	8139		3.5927	0.74939	1	2420800			47838	3790	27401	27402	58599	58599					0.07554204674897846
TEPQSPSSSW	10	Unmodified	_TEPQSPSSSW_					0	0	0		ENST00000529805.1_1_11:105867080-105880474:-|nuORF	ENST00000529805.1_1_11:105867080-105880474:-|nuORF	ENST00000529805.1_1_11:105867080-105880474:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.8045654296875	2	553.24346	1104.47237	0.3862	0.00021366	-2.92	-0.0016155	-2.5338	-0.0014018	553.242134842264	23.941	0.51481	23.902	23.651	24.166	-0.038927					21	17	2	0	0	0	0.31926	1	3534	3534		5.7319	0.97584	1	35783			47839	11607	27402	27403	58600	58600					-0.07568922421000934
TEQPATKETS	10	Unmodified	_TEQPATKETS_					0	0	0		ENSG00000111727|ENST00000229330|HCFC2	ENSG00000111727|ENST00000229330|HCFC2	ENSG00000111727|ENST00000229330|HCFC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.7904052734375	2	546.264393	1090.51423	0.20488	0.00011192	3.3021	0.0018038	3.5069	0.0019157	546.2655884860995	13.518	0.12822	13.419	13.337	13.466	-0.099291					10	4	3	0	0	0	0.31794	1	448	448		8.1555	0.54658	1	26500			47840	2386	27403	27404	58601	58601					-0.02740366732473376
TEQYGKTFF	9	Unmodified	_TEQYGKTFF_					0	0	0			REV__nc|ENSG00000131979|P30793-3|GCH1	REV__nc|ENSG00000131979|P30793-3|GCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.306884765625	2	560.769114	1119.52368	0.26002	0.00014581	0.34965	0.00019607	0.60967	0.00034189	561.2710768693997	94.856	0.11636	94.938	94.893	95.009	0.082779					15	10	2	0	0	0	0.25202	1	25314	25314		10.824	6.4947	1	45922	+		47841	15544	27404	27405	58602	58602					-0.0313055365627406
TERMFYEEMTV	11	Unmodified	_TERMFYEEMTV_					0	0	0			REV__ENST00000526700.5_1_16:70530266-70542451:-|nuORF	REV__ENST00000526700.5_1_16:70530266-70542451:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7639465332031	3	479.212589	1434.61594	0.11993	5.7471E-05	-0.0022944	-1.0995E-06	0.11763	5.6372E-05	479.21295900048733	19.274	0.90415	19.158	18.708	19.612	-0.11592					86	31	4	0	0	0	0.33287	1	2095	2095		2.8433	0.4085	1	140890	+		47842	14351	27405	27406	58603	58603					-0.08398579696608977
TERMFYEEMTV	11	Unmodified	_TERMFYEEMTV_					0	0	0			REV__ENST00000526700.5_1_16:70530266-70542451:-|nuORF	REV__ENST00000526700.5_1_16:70530266-70542451:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7638854980469	3	479.212589	1434.61594	0.11941	5.7223E-05	-0.11143	-5.3399E-05	0.0079813	3.8247E-06	479.5471229707611	19.201	0.75022	19.146	18.766	19.516	-0.055693					77	25	4	0	0	0	0.33287	1	2118	2118		2.8433	0.93691	1	165830	+		47843	14351	27405	27406	58604	58604					-0.08398579696608977
TERPVNRFHL	10	Unmodified	_TERPVNRFHL_					0	0	0		ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2	ENSG00000196562|ENST00000688720|SULF2	ENSG00000196562|ENST00000688720|SULF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.56671142578125	3	423.566794	1267.67855	-0.19153	-8.1127E-05	-0.38187	-0.00016175	-0.5734	-0.00024287	423.56655559773066	28.552	0.70039	28.552	28.277	28.978	0					39	24	2	0	0	0	0.37007	1	5008	5008		8.9762	3.1928	1	120770			47844	7880	27406	27407	58605	58605					0.055421152687813446
TESALSYYEF	10	Unmodified	_TESALSYYEF_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.2692260742188	2	605.269144	1208.52373	0.2238	0.00013546	-0.47754	-0.00028904	-0.25374	-0.00015358	605.2688185066368	65.178	0.87939	65.178	64.755	65.634	0					59	31	3	0	0	0	0.27059	1	16232	16232		24.021	6.9077	1	449210			47845	2517	27407	27408	58606	58606					-0.07218598446957003
TESALSYYEF	10	Unmodified	_TESALSYYEF_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.26904296875	2	605.269144	1208.52373	0.2576	0.00015592	-0.40766	-0.00024674	-0.15006	-9.0826E-05	605.2688951848855	65.09	0.75282	65.179	64.876	65.628	0.088882					53	24	3	0	0	0	0.21644	1	16198	16198		30.637	12.49	1	451840			47846	2517	27407	27408	58607	58607					-0.07218598446957003
TESALSYYEF	10	Unmodified	_TESALSYYEF_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.2697143554688	2	605.269144	1208.52373	0.049745	3.0109E-05	0.064742	3.9186E-05	0.11449	6.9295E-05	605.269025992443	65.151	0.64422	65.14	64.86	65.504	-0.011337					43	23	2	0	0	0	0.21644	1	16246	16246		30.637	12.49	1	467720			47847	2517	27407	27408	58608	58608					-0.07218598446957003
TESKCALVTV	10	Unmodified	_TESKCALVTV_					0	0	0		ENST00000482143.5_1_1:46649328-46650297:+|nuORF;ENST00000482928.5_1_1:46646779-46650297:+|nuORF	ENST00000482143.5_1_1:46649328-46650297:+|nuORF	ENST00000482143.5_1_1:46649328-46650297:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2923583984375	2	525.778625	1049.5427	0.32311	0.00016988	3.6703	0.0019297	3.9934	0.0020996	525.7808118865615	18.719	0.67812	18.719	18.479	19.157	0					54	23	3	0	0	0	0.31889	1	1995	1995		6.2058	2.2614	1	55769			47848	11041	27408	27409	58609	58609					0.019906596430928403
TESKCALVTV	10	Unmodified	_TESKCALVTV_					0	0	0		ENST00000482143.5_1_1:46649328-46650297:+|nuORF;ENST00000482928.5_1_1:46646779-46650297:+|nuORF	ENST00000482143.5_1_1:46649328-46650297:+|nuORF	ENST00000482143.5_1_1:46649328-46650297:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2923583984375	2	525.778625	1049.5427	0.28212	0.00014833	4.2163	0.0022168	4.4984	0.0023652	525.7810187823686	18.91	0.64437	18.793	18.531	19.175	-0.11739					41	22	3	0	0	0	0.31889	1	2035	2035		6.2058	3.6283	1	44306			47849	11041	27408	27409	58610	58610					0.019906596430928403
TESKCALVTV	10	Unmodified	_TESKCALVTV_					0	0	0		ENST00000482143.5_1_1:46649328-46650297:+|nuORF;ENST00000482928.5_1_1:46646779-46650297:+|nuORF	ENST00000482143.5_1_1:46649328-46650297:+|nuORF	ENST00000482143.5_1_1:46649328-46650297:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	525.778625	1049.5427	0.20557	0.00010808	4.198	0.0022072	4.4035	0.0023153	525.7809454733647	18.802	0.66066	18.744	18.509	19.17	-0.058174	-0.0078997	0.00018718	NaN	6.2058	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67677			47850	11041	27408	27409							0.019906596430928403
TETLKKKN	8	Unmodified	_TETLKKKN_					0	0	0		nc|ENSG00000116783|Q59H18-4|TNNI3K	nc|ENSG00000116783|Q59H18-4|TNNI3K	nc|ENSG00000116783|Q59H18-4|TNNI3K	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7713928222656	2	481.287474	960.560395	-0.13785	-6.6345E-05	-0.76496	-0.00036816	-0.90281	-0.00043451	481.2871170497682	13.465	0.33997	13.465	13.227	13.567	0					18	11	2	0	0	0	0.344	1	458	458		2.5775	0	1	46049			47851	12668	27409	27410	58611	58611					0.07853742960276122
TETVSTTL	8	Unmodified	_TETVSTTL_					0	0	0		ENSG00000197838|ENST00000330436|CYP2A13;ENSG00000255974|ENST00000301141|CYP2A6;ENSG00000198077|ENST00000301146|CYP2A7	ENSG00000197838|ENST00000330436|CYP2A13	ENSG00000197838|ENST00000330436|CYP2A13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.22784423828125	2	426.221465	850.428378	0.073033	3.1128E-05	-1.1241	-0.00047912	-1.0511	-0.00044799	426.2209678937001	72.394	0.97651	72.367	71.953	72.929	-0.027275					52	34	2	0	0	0	0.31934	1	18483	18483		24.674	0	1	262680			47852	8002	27410	27411	58612	58612					-0.002819068473286279
TEVHSSPVPNR	11	Unmodified	_TEVHSSPVPNR_					0	0	0			REV__ENSG00000204186|ENST00000374423|ZDBF2	REV__ENSG00000204186|ENST00000374423|ZDBF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.2107238769531	3	408.210676	1221.6102	-0.086019	-3.5114E-05	0.35936	0.00014669	0.27334	0.00011158	408.2107821467117	17.151	0.79448	17.151	16.952	17.746	0					64	27	4	0	0	0	0.45422	1	1593	1593		4.1166	1.0444	1	371000	+		47853	18925	27411	27412	58613	58613					0.008258258982777988
TEVISGDTHVV	11	Unmodified	_TEVISGDTHVV_					0	0	0			REV__nc|ENSG00000177030|O75398-5|DEAF1	REV__nc|ENSG00000177030|O75398-5|DEAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3139038085938	2	578.79586	1155.57717	0.35272	0.00020415	0.22345	0.00012933	0.57618	0.00033349	578.7960127324599	28.985	0.65628	28.985	28.729	29.385	0					41	23	3	0	0	0	0.31312	1	5203	5203		16.149	6.766	1	380220	+		47854	17967	27412	27413	58614	58614					0.005601990555533121
TEVRRLIA	8	Unmodified	_TEVRRLIA_					0	0	0			REV__nc|ENSG00000135951|Q9BZW7-2|TSGA10	REV__nc|ENSG00000135951|Q9BZW7-2|TSGA10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.27728271484375	2	479.295633	956.576714	0.14551	6.9742E-05	-0.74166	-0.00035547	-0.59615	-0.00028573	479.2954502917746	23.645	0.57041	23.573	23.396	23.966	-0.072559					37	19	3	0	0	0	0.34337	1	3464	3464		5.2307	0	1	126770	+		47855	15772	27413	27414	58615	58615					0.0966886891702643
TEVYRELT	8	Unmodified	_TEVYRELT_					0	0	0			REV__ENST00000586932.5_1_19:39109833-39116793:+|nuORF	REV__ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2639465332031	2	505.761289	1009.50803	0.33877	0.00017134	4.0877	0.0020674	4.4265	0.0022388	505.7647775963944	68.334	0.9701	68.334	67.842	68.812	0					85	35	4	0	0	0	0.37937	1	17174	17174		21.747	3.6003	1	599110	+		47856	18053	27414	27415	58616	58616					0.0036515982666287528
TEYELVAFG	9	Unmodified	_TEYELVAFG_					0	0	0			REV__nc|ENSG00000161847|Q8IY67-2|RAVER1	REV__nc|ENSG00000161847|Q8IY67-2|RAVER1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7380981445312	2	514.75039	1027.48623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.851	1	40.851	40.351	41.351	0								0	0	0	0.23091	1	8750	8750		12.532	0	1		+		47857	16951	27415	27416	58617	58617					-0.02641644921891384
TEYRTKWESG	10	Unmodified	_TEYRTKWESG_					0	0	0			REV__ENST00000477250.1_1_13:36855391-36871856:-|nuORF	REV__ENST00000477250.1_1_13:36855391-36871856:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.875244140625	3	419.535048	1255.58332	0.020906	8.7707E-06	-1.0774	-0.00045202	-1.0565	-0.00044325	419.86897809242356	31.076	0.43187	31.105	30.921	31.353	0.029598					35	15	3	0	0	0	0.31746	1	5808	5808		7.0371	0.40671	1	220710	+		47858	19187	27416	27417	58618	58618					-0.0342528271289666
TEYSIYVNN	9	Unmodified	_TEYSIYVNN_					0	0	0		ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	ENSG00000042781|ENST00000307340|USH2A	ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8531494140625	2	551.756204	1101.49785	0.47418	0.00026163	-3.9731	-0.0021922	-3.499	-0.0019306	551.7537157978469	51.393	0.23415	51.402	51.194	51.428	0.0095673					11	8	2	0	0	0	0.25066	1	11954	11954		1.6526	0	1	110670			47859	615	27417	27418	58619	58619					-0.0488344789855546
TFAFPRIYLFP	11	Unmodified	_TFAFPRIYLFP_					0	0	0		ENST00000378426.5_2_X:40487439-40487763:-|nuORF	ENST00000378426.5_2_X:40487439-40487763:-|nuORF	ENST00000378426.5_2_X:40487439-40487763:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2584533691406	3	457.920174	1370.73869	0.2803	0.00012835	1.4411	0.00065992	1.7214	0.00078827	457.92087585146646	36.313	0.30511	36.396	36.284	36.59	0.082359					15	10	2	0	0	0	0.33277	1	7345	7345		3.0723	0.22898	1	172040			47860	9958	27418	27419	58620	58620					0.06815412879313953
TFAQRNSL	8	Unmodified	_TFAQRNSL_					0	0	0		nc|ENSG00000125812|Q9H116-4|GZF1;ENSG00000125812|ENST00000338121|GZF1	nc|ENSG00000125812|Q9H116-4|GZF1	nc|ENSG00000125812|Q9H116-4|GZF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.75537109375	2	468.748516	935.482479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.462	1	65.462	64.962	65.962	0								0	0	0	0.29147	1	16331	16331		30.225	1.738	1				47861	3231	27419	27420	58621	58621					0.012157300949070304
TFAVTDELVF	10	Unmodified	_TFAVTDELVF_					0	0	0		ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2930908203125	2	571.292422	1140.57029	0.49161	0.00028086	0.074147	4.236E-05	0.56576	0.00032322	571.2923914245227	84.085	0.7952	84.085	83.817	84.612	0					92	31	4	0	0	0	0.004829	1	22011	22011		92.653	56.526	1	1048800			47862	1736	27420	27421	58622	58622					0.005628861749983116
TFAVTDELVF	10	Unmodified	_TFAVTDELVF_					0	0	0		ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2925415039062	2	571.292422	1140.57029	0.56797	0.00032448	0.027032	1.5443E-05	0.595	0.00033992	571.2923666003593	84.005	0.83076	84.082	83.783	84.614	0.077095					90	33	3	0	0	0	0.0036108	2	21976	21976;22033		99.755	63.628	1	1282400			47863	1736	27420	27421	58623;58624	58623					0.005628861749983116
TFAVTDELVF	10	Unmodified	_TFAVTDELVF_					0	0	0		ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2929077148438	2	571.292422	1140.57029	0.45733	0.00026127	0.23288	0.00013304	0.69021	0.00039431	571.2924398952321	84.049	0.78817	84.033	83.812	84.6	-0.016823					82	34	3	0	0	0	0.004829	3	22060	22008;22060;22111		92.653	60.348	1	1019600			47864	1736	27420	27421	58625;58626;58627	58626					0.005628861749983116
TFCLLHTSV	9	Unmodified	_TFCLLHTSV_					0	0	0			REV__ENST00000468943.1_1_6:24775218-24777534:+|nuORF	REV__ENST00000468943.1_1_6:24775218-24777534:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.27783203125	2	510.762778	1019.511	-0.10637	-5.4329E-05	-2.8785	-0.0014702	-2.9848	-0.0015245	510.7616149658104	13.952	0.25962	13.886	13.747	14.007	-0.066068					14	8	2	0	0	0	0.22596	1	552	552		21.747	0	1	68139	+		47865	21334	27421	27422	58628	58628					0.002027116798103634
TFCRSEYVF	9	Unmodified	_TFCRSEYVF_					0	0	0		ENST00000264033.5_1_11:119149415-119156175:+|nuORF	ENST00000264033.5_1_11:119149415-119156175:+|nuORF	ENST00000264033.5_1_11:119149415-119156175:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7821655273438	2	576.263142	1150.51173	0.37832	0.00021801	0.06046	3.4841E-05	0.43878	0.00025286	576.2630460616083	51.369	0.79852	51.416	50.9	51.699	0.046574					35	29	2	0	0	0	0.24289	1	11962	11962		18.146	4.2403	1	371420			47866	9021	27422	27423	58629	58629					-0.057504936711211485
TFCSLVPLIM	10	Unmodified	_TFCSLVPLIM_					0	0	0			REV__ENSG00000180917|ENST00000434935|CMTR2	REV__ENSG00000180917|ENST00000434935|CMTR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.25634765625	2	562.298139	1122.58172	0.41104	0.00023112	-0.31687	-0.00017817	0.094169	5.2951E-05	562.2981460851852	49.464	0.76573	49.464	49.077	49.843	0					40	27	2	0	0	0	0.30079	1	11423	11423		14.838	2.3067	1	164570	+		47867	18124	27423	27424	58630	58630					0.025336686731179725
TFDLQVSLS	9	Unmodified	_TFDLQVSLS_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7497253417969	2	505.263665	1008.51278	0.32897	0.00016622	0.31898	0.00016117	0.64795	0.00032739	505.26345311440787	75.326	0.52237	75.326	75.043	75.565	0					37	18	3	0	0	0	0.22143	1	19366	19366		24.991	2.2547	1	299010	+		47868	16569	27424	27425	58631	58631					0.008860439694331035
TFDLQVSLS	9	Unmodified	_TFDLQVSLS_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7496032714844	2	505.263665	1008.51278	0.51665	0.00026105	-0.12579	-6.3557E-05	0.39086	0.00019749	505.26335680726703	75.373	0.57758	75.342	75.059	75.637	-0.031487					34	21	2	0	0	0	0.18123	1	19325	19325		27.629	3.6082	1	285030	+		47869	16569	27424	27425	58632	58632					0.008860439694331035
TFDNVLPGK	9	Unmodified	_TFDNVLPGK_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7662658691406	2	495.766374	989.518196	0.53238	0.00026394	-0.90465	-0.0004485	-0.37227	-0.00018456	495.7658605081982	42.047	0.63748	42.132	41.876	42.514	0.085197					38	22	2	0	0	0	0.014206	1	9147	9147		72.968	42.331	1	592870			47870	1820	27425	27426	58633	58633					0.023017675519099612
TFDNVLPGK	9	Unmodified	_TFDNVLPGK_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7662353515625	2	495.766374	989.518196	0.55046	0.0002729	-0.86964	-0.00043114	-0.31918	-0.00015824	495.7658333187177	41.913	0.93643	42.01	41.841	42.778	0.096626					39	32	2	0	0	0	0.0091837	1	9102	9102		80.676	50.039	1	583870			47871	1820	27425	27426	58634	58634					0.023017675519099612
TFDNVLPGK	9	Unmodified	_TFDNVLPGK_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	495.766374	989.518196	0.18168	9.0069E-05	-0.36238	-0.00017965	-0.1807	-8.9585E-05	495.7660112871369	42.176	0.62625	42.176	41.969	42.595	0	0.069793	0.0004462	NaN	80.676	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	588660			47872	1820	27425	27426							0.023017675519099612
TFDPALIRAG	10	Unmodified	_TFDPALIRAG_					0	0	0			REV__ENST00000491018.1_1_9:123921018-123923571:+|nuORF	REV__ENST00000491018.1_1_9:123921018-123923571:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3041381835938	2	530.792924	1059.57129	0.79433	0.00042163	-1.3695	-0.00072694	-0.5752	-0.00030531	530.7924311230969	55.052	0.50154	55.033	54.818	55.319	-0.019081					28	18	3	0	0	0	0.023345	1	13155	13155		68.081	18.412	1	716750	+		47873	21610	27426	27427	58635	58635					0.04389145334562272
TFDPALIRAG	10	Unmodified	_TFDPALIRAG_					0	0	0			REV__ENST00000491018.1_1_9:123921018-123923571:+|nuORF	REV__ENST00000491018.1_1_9:123921018-123923571:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	530.792924	1059.57129	0.90363	0.00047964	-0.40375	-0.00021431	0.49988	0.00026533	530.7928832682718	54.921	0.46796	54.921	54.651	55.119	0	-0.035667	0.00085363	NaN	68.081	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	561960	+		47874	21610	27426	27427							0.04389145334562272
TFDPALIRAG	10	Unmodified	_TFDPALIRAG_					0	0	0			REV__ENST00000491018.1_1_9:123921018-123923571:+|nuORF	REV__ENST00000491018.1_1_9:123921018-123923571:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	530.792924	1059.57129	0.68747	0.00036491	-1.4281	-0.00075802	-0.74062	-0.00039312	530.7919345551206	54.854	0.56635	54.917	54.642	55.209	0.063202	-0.039872	-0.0002338	NaN	68.081	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	505710	+		47875	21610	27426	27427							0.04389145334562272
TFDVLYMDE	9	Unmodified	_TFDVLYMDE_					0	0	0			REV__CCDC174|p.S380Rfs*75|1|0.22|ENSG00000154781|chr3:14670927-14670942|GTCAGATCTCCGGGCT/-|frameshift_variant;REV__ENSG00000154781|ENST00000383794|CCDC174	REV__ENSG00000154781|ENST00000383794|CCDC174	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2792358398438	2	566.74699	1131.47943	0.27844	0.00015781	0.66495	0.00037686	0.9434	0.00053467	566.7469917178225	62.198	0.63939	62.198	61.971	62.611	0					28	23	2	0	0	0	0.2451	1	15348	15348		10.824	0.75	1	388180	+		47876	13141;16677	27427	27428	58636	58636					-0.08105325864789847
TFEELHFEI	9	Unmodified	_TFEELHFEI_					0	0	0		nc|ENSG00000064012|Q14790-3|CASP8;nc|ENSG00000064012|Q14790-2|CASP8;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.2977294921875	2	582.782222	1163.54989	0.28606	0.00016671	-0.68049	-0.00039658	-0.39442	-0.00022986	582.7817139975266	71.424	0.95964	71.481	71.238	72.198	0.056572					75	34	3	0	0	0	0.23007	1	18240	18240		19.257	4.4187	1	1504700			47877	782	27428	27429	58637	58637					-0.025342844847955348
TFEELHFEI	9	Unmodified	_TFEELHFEI_					0	0	0		nc|ENSG00000064012|Q14790-3|CASP8;nc|ENSG00000064012|Q14790-2|CASP8;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	582.782222	1163.54989	0.35498	0.00020687	-0.98437	-0.00057367	-0.62939	-0.0003668	582.7818550549155	71.49	0.84206	71.49	71.262	72.104	0	-0.019238	-0.00022587	NaN	19.257	76	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1167700			47878	782	27428	27429							-0.025342844847955348
TFEELHFEI	9	Unmodified	_TFEELHFEI_					0	0	0		nc|ENSG00000064012|Q14790-3|CASP8;nc|ENSG00000064012|Q14790-2|CASP8;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	582.782222	1163.54989	0.41305	0.00024072	-0.75949	-0.00044262	-0.34644	-0.0002019	582.7816812623672	71.584	0.80203	71.557	71.315	72.117	-0.027275	0.047789	3.6242E-05	NaN	19.257	61	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1609700			47879	782	27428	27429							-0.025342844847955348
TFEQINELLI	10	Unmodified	_TFEQINELLI_					0	0	0		ENSG00000124743|ENST00000370905|KLHL31	ENSG00000124743|ENST00000370905|KLHL31	ENSG00000124743|ENST00000370905|KLHL31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5711975097656	3	407.223811	1218.6496	0.079095	3.2209E-05	1.1816	0.00048116	1.2607	0.00051337	407.55853664214465	39.992	0.68755	40.091	39.844	40.532	0.099407					50	24	3	0	0	0	0.17571	1	8476	8476		35.612	9.3441	1	258290			47880	3177	27429	27430	58638	58638					0.04902533129143194
TFETNDYIF	9	Unmodified	_TFETNDYIF_					0	0	0			REV__ENSG00000122729|ENST00000309951|ACO1	REV__ENSG00000122729|ENST00000309951|ACO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.345703125	2	575.258579	1148.50261	0.36664	0.00021091	1.6621	0.00095614	2.0287	0.001167	575.761072717639	88.498	0.31643	88.498	88.315	88.632	0					22	17	2	0	0	0	0.25706	1	23400	23400		3.5965	1.2938	1	52461	+		47881	15167	27430	27431	58639	58639					-0.06570563755826697
TFETNDYIF	9	Unmodified	_TFETNDYIF_					0	0	0			REV__ENSG00000122729|ENST00000309951|ACO1	REV__ENSG00000122729|ENST00000309951|ACO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8433837890625	2	575.258579	1148.50261	0.31085	0.00017882	1.7141	0.00098603	2.0249	0.0011648	575.2592186074498	88.468	0.4173	88.465	88.192	88.609	-0.0028381					32	20	2	0	0	0	0.2451	1	23286	23286		10.824	3.5347	1	75819	+		47882	15167	27430	27431	58640	58640					-0.06570563755826697
TFGAYAVKETK	11	Unmodified	_TFGAYAVKETK_					0	0	0			REV__ENSG00000124091|ENST00000243913|GCNT7	REV__ENSG00000124091|ENST00000243913|GCNT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.8978576660156	3	405.552039	1213.63429	0.092831	3.7648E-05	1.3472	0.00054637	1.4401	0.00058402	405.552461309751	48.455	0.45531	48.455	48.18	48.636	0					36	15	3	0	0	0	0.30767	2	11089	11089;11099		12.856	5.7542	1	162150	+		47883	15207	27431	27432	58641;58642	58641					0.036016663319287545
TFGAYAVKETK	11	Unmodified	_TFGAYAVKETK_					0	0	0			REV__ENSG00000124091|ENST00000243913|GCNT7	REV__ENSG00000124091|ENST00000243913|GCNT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.8978576660156	3	405.552039	1213.63429	0.15561	6.3109E-05	1.1912	0.00048307	1.3468	0.00054618	405.55228538247985	48.393	0.59977	48.436	48.095	48.695	0.043324					46	22	3	0	0	0	0.30767	1	11062	11062		12.856	6.6641	1	253470	+		47884	15207	27431	27432	58643	58643					0.036016663319287545
TFGAYAVKETK	11	Unmodified	_TFGAYAVKETK_					0	0	0			REV__ENSG00000124091|ENST00000243913|GCNT7	REV__ENSG00000124091|ENST00000243913|GCNT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.89837646484375	3	405.552039	1213.63429	0.15561	6.3109E-05	1.1912	0.00048307	1.3468	0.00054618	405.55228538247985	48.393	0.59977	48.436	48.095	48.695	0.043324					46	22	3	0	0	0	0.32824	1	11115	11115		12.856	4.7004	1	253470	+		47885	15207	27431	27432	58644	58644					0.036016663319287545
TFGCFCAWWF	10	Unmodified	_TFGCFCAWWF_					0	0	0			REV__ENST00000346872.7_2_17:37914536-37914653:-|nuORF	REV__ENST00000346872.7_2_17:37914536-37914653:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.1733703613281	3	423.173629	1266.49906	-0.17895	-7.5727E-05	0.13141	5.5608E-05	-0.047544	-2.0119E-05	423.17361039853415	41.101	0.64471	41.198	40.832	41.477	0.096626					86	23	5	0	0	0	0.39782	1	8779	8779		3.8763	3.8763	1	1479000	+		47886	20154	27432	27433	58645	58645					-0.12353228335041422
TFGESPGRY	9	Unmodified	_TFGESPGRY_					0	0	0			REV__nc|ENSG00000103994|Q9H2Y7|ZNF106	REV__nc|ENSG00000103994|Q9H2Y7|ZNF106	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.8067321777344	2	507.237981	1012.46141	0.25912	0.00013143	0.26662	0.00013524	0.52574	0.00026667	507.238154529588	32.916	0.49311	32.97	32.765	33.258	0.054371					25	17	2	0	0	0	0.25622	1	6386	6386		7.2892	0	1	172260	+		47887	14390	27433	27434	58646	58646					-0.044322800046188604
TFGRRWWFYLF	11	Unmodified	_TFGRRWWFYLF_					0	0	0			REV__ENST00000471075.1_1_3:171371881-171395443:-|nuORF	REV__ENST00000471075.1_1_3:171371881-171395443:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.844970703125	3	526.93834	1577.79319	0.62584	0.00032978	-3.2751	-0.0017258	-2.6493	-0.001396	527.2710633948504	58.472	0.34789	58.472	58.216	58.564	0					16	11	2	0	0	0	0.33122	1	14170	14170		4.4062	1.7749	1	144410	+		47888	21354	27434	27435	58647	58647					0.027404247507547552
TFIDLLVSV	9	Unmodified	_TFIDLLVSV_					0	0	0			REV__ENSG00000184619|ENST00000396267|KRBA2	REV__ENSG00000184619|ENST00000396267|KRBA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2471923828125	2	503.794601	1005.57465	0.64396	0.00032442	-3.1109	-0.0015673	-2.467	-0.0012428	503.79268454087895	32.146	0.55158	32.188	32.053	32.605	0.042366					30	19	2	0	0	0	0.25066	1	6129	6129		7.2892	0	1	169500	+		47889	18326	27435	27436	58648	58648					0.07208395388579447
TFIGARSR	8	Unmodified	_TFIGARSR_					0	0	0			REV__ENST00000530004.5_2_1:51753565-51753826:-|nuORF	REV__ENST00000530004.5_2_1:51753565-51753826:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2480773925781	2	454.259051	906.503549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.305	1	29.305	28.805	29.805	0								0	0	0	0.36336	1	5225	5225		8.5933	0	1		+		47890	22005	27436	27437	58649	58649					0.046557401944255616
TFISAASKF	9	Unmodified	_TFISAASKF_					0	0	0		nc|ENSG00000162976|Q8N755-2|SLC66A3;ENSG00000162976|ENST00000295083|SLC66A3	nc|ENSG00000162976|Q8N755-2|SLC66A3	nc|ENSG00000162976|Q8N755-2|SLC66A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001403808594	2	486.263468	970.512382	0.36125	0.00017566	-0.010579	-5.1443E-06	0.35067	0.00017052	486.26325379413623	48.936	1.0073	48.936	48.721	49.729	0					52	36	2	0	0	0	0.18479	1	11308	11308		28.495	9.2375	1	364630			47891	5637	27437	27438	58650	58650					0.025946690402406603
TFISAASKF	9	Unmodified	_TFISAASKF_					0	0	0		nc|ENSG00000162976|Q8N755-2|SLC66A3;ENSG00000162976|ENST00000295083|SLC66A3	nc|ENSG00000162976|Q8N755-2|SLC66A3	nc|ENSG00000162976|Q8N755-2|SLC66A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2906494140625	2	486.263468	970.512382	0.25634	0.00012465	-0.045537	-2.2143E-05	0.2108	0.00010251	486.26329866723665	49.018	1.2651	49.063	48.768	50.033	0.044891					68	46	3	0	0	0	0.067763	1	11286	11286		59.368	59.368	1	428610			47892	5637	27437	27438	58651	58651					0.025946690402406603
TFISAASKF	9	Unmodified	_TFISAASKF_					0	0	0		nc|ENSG00000162976|Q8N755-2|SLC66A3;ENSG00000162976|ENST00000295083|SLC66A3	nc|ENSG00000162976|Q8N755-2|SLC66A3	nc|ENSG00000162976|Q8N755-2|SLC66A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.95635986328125	2	486.263468	970.512382	0.18268	8.8831E-05	0.15029	7.3078E-05	0.33297	0.00016191	486.26348601742956	48.889	1.4225	48.921	48.602	50.025	0.032047					67	51	2	0	0	0	0.17696	1	11216	11216		36.506	36.506	1	394300			47893	5637	27437	27438	58652	58652					0.025946690402406603
TFITSTTYL	9	Unmodified	_TFITSTTYL_					0	0	0			REV__ENST00000322348.5_1_5:74325336-74325411:-|nuORF	REV__ENST00000322348.5_1_5:74325336-74325411:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2658081054688	2	523.773865	1045.53318	0.60545	0.00031712	2.4637	0.0012904	3.0691	0.0016075	524.7807117595877	53.872	0.38217	53.862	53.794	54.176	-0.0096092					23	13	3	0	0	0	0.25314	1	12743	12743		15.847	2.3393	1	172300	+		47894	19976	27438	27439	58653	58653					0.012232146292035395
TFKELANEF	9	Unmodified	_TFKELANEF_					0	0	0		nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2750244140625	2	549.776939	1097.53933	0.51829	0.00028494	-0.85321	-0.00046908	-0.33493	-0.00018413	550.2773273446345	53.233	0.90781	53.223	52.863	53.771	-0.0096054					44	33	2	0	0	0	0.152	1	12489	12489		43.982	17.098	1	259990			47895	813	27439	27440	58654	58654					-0.005542671392504417
TFKQAKSKI	9	Unmodified	_TFKQAKSKI_					0	0	0		ENST00000517617.1_1_8:68864752-69023167:+|nuORF;nc|ENSG00000046889|Q70Z35-4|PREX2;ENSG00000046889|ENST00000288368|PREX2	ENST00000517617.1_1_8:68864752-69023167:+|nuORF	ENST00000517617.1_1_8:68864752-69023167:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8056030273438	2	525.818941	1049.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.246	1	12.246	11.746	12.746	0								0	0	0	0.26734	1	69	69		0.45834	0	1				47896	11439	27440	27441	58655	58655					0.10050308748327552
TFLPTGLQF	9	Unmodified	_TFLPTGLQF_					0	0	0		ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.279541015625	2	512.279118	1022.54368	0.59021	0.00030235	-0.38957	-0.00019957	0.20064	0.00010278	512.278780685272	83.634	1.4625	83.634	83.2	84.663	0					89	56	2	0	0	0	0.0037449	1	21820	21820		96.367	51.96	1	1542700			47897	1881	27441	27442	58656	58656					0.03331242074318652
TFLPTGLQF	9	Unmodified	_TFLPTGLQF_					0	0	0		ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.279052734375	2	512.279118	1022.54368	0.43743	0.00022408	-0.22038	-0.0001129	0.21704	0.00011119	512.2788580850478	83.551	1.3041	83.628	83.214	84.518	0.077095					98	51	2	0	0	0	0.0041491	1	21931	21931		93.166	67.767	1	1084500			47898	1881	27441	27442	58657	58657					0.03331242074318652
TFLPTGLQF	9	Unmodified	_TFLPTGLQF_					0	0	0		ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2789916992188	2	512.279118	1022.54368	0.43603	0.00022337	-0.19942	-0.00010216	0.23661	0.00012121	512.278890847007	83.663	1.2847	83.646	83.246	84.531	-0.016823					91	55	2	0	0	0	0.00078391	1	21952	21952		125.53	85.572	1	1331300			47899	1881	27441	27442	58658	58658					0.03331242074318652
TFLVSNIDN	9	Unmodified	_TFLVSNIDN_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2792358398438	2	511.761289	1021.50803	0.42092	0.00021541	-3.3639	-0.0017215	-2.9429	-0.0015061	512.2619288669252	83.377	0.23991	83.451	83.325	83.565	0.073959					11	8	2	0	0	0	0.14076	1	21835	21835		32.305	5.4218	1	73855	+		47900	14042	27442	27443	58659	58659					-0.0018684017333043812
TFLVSNIDN	9	Unmodified	_TFLVSNIDN_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	511.761289	1021.50803	0.42092	0.00021541	-3.3639	-0.0017215	-2.9429	-0.0015061	512.2619288669252	83.377	0.23991	83.451	83.325	83.565	0.073959	0	0	NaN	32.305	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73855	+		47901	14042	27442	27443							-0.0018684017333043812
TFLWLKWRV	9	Unmodified	_TFLWLKWRV_					0	0	0		ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.1891174316406	3	416.913243	1247.7179	-0.21817	-9.0959E-05	3.0806	0.0012844	2.8625	0.0011934	417.2491565363691	42.721	0.16464	42.721	42.595	42.76	0					7	5	2	0	0	0	0.26127	1	9290	9290		2.7352	1.4056	1	43985			47902	3315	27443	27444	58660	58660					0.1039486729030159
TFMDRGYVF	9	Unmodified	_TFMDRGYVF_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.303466796875	2	568.265684	1134.51682	-0.027795	-1.5795E-05	-0.63366	-0.00036009	-0.66146	-0.00037588	568.2656783833388	59.917	0.62296	59.917	59.412	60.035	0					30	21	2	0	0	0	0.1939	1	14545	14545		30.637	6.616	1	330650			47903	3917	27444	27445	58661	58661					-0.045061898085123175
TFMDRGYVF	9	Unmodified	_TFMDRGYVF_					0	0	0		nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.3035278320312	2	568.265684	1134.51682	0.0074249	4.2193E-06	-0.42325	-0.00024052	-0.41583	-0.0002363	568.2656550293917	59.747	0.75274	59.842	59.294	60.047	0.095089					38	26	2	0	0	0	0.16284	1	14489	14489		30.637	6.616	1	335990			47904	3917	27444	27445	58662	58662					-0.045061898085123175
TFMPEDMEN	9	Unmodified	_TFMPEDMEN_					0	0	0			REV__nc|ENSG00000105953|Q02218-2|OGDH;REV__nc|ENSG00000197444|Q9ULD0-3|OGDHL	REV__nc|ENSG00000105953|Q02218-2|OGDH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2158813476562	2	557.215	1112.41545	0.70526	0.00039298	0.48671	0.0002712	1.192	0.00066418	557.2153987330641	37.293	0.85763	37.293	37.013	37.871	0					77	30	4	0	0	0	0.33018	1	7640	7640		4.3292	0	1	552130	+		47905	14495;18737	27445	27446	58663	58663					-0.13626429293367437
TFPGAFGELY	10	Unmodified	_TFPGAFGELY_					0	0	0		nc|ENSG00000063660|P35052-2|GPC1;ENST00000469694.5_1_2:241381745-241403123:+|nuORF;ENSG00000063660|ENST00000264039|GPC1	nc|ENSG00000063660|P35052-2|GPC1	nc|ENSG00000063660|P35052-2|GPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7817993164062	2	551.266207	1100.51786	0.9585	0.00052839	1.2506	0.00068939	2.2091	0.0012178	551.7684323353801	56.043	0.46961	56.114	55.88	56.35	0.070885					43	16	4	0	0	0	0.34325	1	13405	13405		13.906	2.2658	1	2200500			47906	778	27446	27447	58664	58664					-0.028376521679547295
TFPKPSFSL	9	Unmodified	_TFPKPSFSL_					0	0	0			REV__nc|ENSG00000080224|Q9UF33|EPHA6	REV__nc|ENSG00000080224|Q9UF33|EPHA6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.84527587890625	2	512.279118	1022.54368	0.050824	2.6036E-05	-1.1513	-0.00058978	-1.1005	-0.00056374	512.2783554976925	51.9	0.42946	51.899	51.631	52.06	-0.00080872					29	15	2	0	0	0	0.21389	1	12118	12118		13.906	3.0821	1	464210	+		47907	13883	27447	27448	58665	58665					0.03331242074330021
TFQDFSHIF	9	Unmodified	_TFQDFSHIF_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;ENST00000496773.1_1_21:11039429-11058260:-|nuORF	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.31591796875	2	571.269281	1140.52401	0.16243	9.2789E-05	-2.1661	-0.0012374	-2.0036	-0.0011446	571.2680966064855	69.725	0.4227	69.703	69.515	69.937	-0.022087					19	15	2	0	0	0	0.23784	1	17565	17565		19.257	4.4187	1	94952			47908	706	27448	27449	58666	58666					-0.04063133936438135
TFQLPLPEL	9	Unmodified	_TFQLPLPEL_					0	0	0		ENST00000599581.5_1_19:52786637-52794448:+|nuORF;ENSG00000196214|ENST00000439461|ZNF766	ENST00000599581.5_1_19:52786637-52794448:+|nuORF	ENST00000599581.5_1_19:52786637-52794448:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3145141601562	2	529.30005	1056.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.11	1	112.11	111.61	112.61	0								0	0	0	0.25858	1	29150	29150		3.5965	0.60125	1				47909	7837	27449	27450	58667	58667					0.059517977628502194
TFQMKFFYI	9	Oxidation (M)	_TFQM(Oxidation (M))KFFYI_		TFQM(1)KFFYI		TFQM(64)KFFYI	0	0	1		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1;ENSG00000174599|ENST00000310754|TRAM1L1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.8074340820312	2	620.807185	1239.59982	0.26857	0.00016673	0.20256	0.00012575	0.47113	0.00029248	620.8070750332686	67.548	1.0604	67.548	66.937	67.997	0					85	36	3	0	0	0	0.020233	2	16964	16915;16964		63.961	42.424	1	399420			47910	858	27450	27451	58668;58669	58669		109			-0.010398730805036394
TFQMKFFYI	9	Oxidation (M)	_TFQM(Oxidation (M))KFFYI_		TFQM(1)KFFYI		TFQM(64)KFFYI	0	0	1		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1;ENSG00000174599|ENST00000310754|TRAM1L1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.8067016601562	2	620.807185	1239.59982	0.12369	7.679E-05	0.084566	5.2499E-05	0.20826	0.00012929	620.806998859375	67.366	0.93162	67.444	67.068	68	0.078049					81	32	3	0	0	0	0.020233	2	16888	16888;16939		63.961	50.054	1	376090			47911	858	27450	27451	58670;58671	58670		109			-0.010398730805036394
TFQMKFFYI	9	Oxidation (M)	_TFQM(Oxidation (M))KFFYI_		TFQM(1)KFFYI		TFQM(77)KFFYI	0	0	1		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1;ENSG00000174599|ENST00000310754|TRAM1L1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.8076171875	2	620.807185	1239.59982	0.089279	5.5425E-05	0.089978	5.5859E-05	0.17926	0.00011128	620.8069606387902	67.515	0.98495	67.499	66.981	67.966	-0.016296					80	33	3	0	0	0	0.011693	3	16968	16918;16968;17018		76.825	54.224	1	343550			47912	858	27450	27451	58672;58673;58674	58673		109			-0.010398730805036394
TFQQMLIWA	9	Unmodified	_TFQQMLIWA_					0	0	0			REV__TRIM6|p.G370Mfs*38|1|0.29|ENSG00000121236|chr11:5610982-5610986|GGGGG/-|frameshift_variant	REV__TRIM6|p.G370Mfs*38|1|0.29|ENSG00000121236|chr11:5610982-5610986|GGGGG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.3186645507812	2	569.291702	1136.56885	0.71459	0.00040681	1.7264	0.00098284	2.441	0.0013896	569.2922131878851	60.645	0.32171	60.635	60.516	60.838	-0.0094566					15	11	2	0	0	0	0.25202	1	14809	14809		10.824	0	1	306140	+		47913	23342	27451	27452	58675	58675					0.0060297360525964905
TFQVLLYT	8	Unmodified	_TFQVLLYT_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.3089599609375	2	492.773668	983.532783	0.078002	3.8437E-05	-3.3448	-0.0016482	-3.2668	-0.0016098	492.7720221418888	25.64	0.13868	25.584	25.539	25.677	-0.055931					5	4	2	0	0	0	0.34198	1	4127	4127		10.824	1.4765	1	48650			47914	6671	27452	27453	58676	58676					0.04035839700043198
TFQYRVWHFVV	11	Unmodified	_TFQYRVWHFVV_					0	0	0		ENSG00000198216|ENST00000367573|CACNA1E;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E	ENSG00000198216|ENST00000367573|CACNA1E	ENSG00000198216|ENST00000367573|CACNA1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2768859863281	3	494.594461	1480.76155	0.38336	0.00018961	0.10333	5.1105E-05	0.48669	0.00024071	494.59464890860045	23.525	0.14333	23.486	23.391	23.534	-0.038927					7	4	2	0	0	0	0.33346	1	3446	3446		0.50596	0	1	43261			47915	8052	27453	27454	58677	58677					0.0404043199678199
TFRDVALEF	9	Unmodified	_TFRDVALEF_					0	0	0		ENSG00000197360|ENST00000357774|ZNF98	ENSG00000197360|ENST00000357774|ZNF98	ENSG00000197360|ENST00000357774|ZNF98	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.238037109375	2	549.284931	1096.55531	0.54422	0.00029893	-0.79734	-0.00043797	-0.25312	-0.00013904	549.2845812987036	55.682	0.33804	55.682	55.482	55.82	0					17	11	2	0	0	0	0.22596	1	13279	13279		15.847	0	1	130560			47916	7956	27454	27455	58678	58678					0.010894390976545765
TFRDVALEF	9	Unmodified	_TFRDVALEF_					0	0	0		ENSG00000197360|ENST00000357774|ZNF98	ENSG00000197360|ENST00000357774|ZNF98	ENSG00000197360|ENST00000357774|ZNF98	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	549.284931	1096.55531	0.71447	0.00039245	-0.70065	-0.00038485	0.013827	7.5952E-06	549.2842452560782	55.62	0.35766	55.691	55.446	55.804	0.070885	0.0043601	6.0903E-05	NaN	15.847	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166220			47917	7956	27454	27455							0.010894390976545765
TFRPERLL	8	Unmodified	_TFRPERLL_					0	0	0		nc|ENSG00000051180|Q06609-3|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-3|RAD51	nc|ENSG00000051180|Q06609-3|RAD51	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7667846679688	2	516.303458	1030.59236	0.33318	0.00017202	0.085034	4.3903E-05	0.41821	0.00021592	516.3035161492027	37.876	0.33253	37.967	37.821	38.153	0.090881					17	11	2	0	0	0	0.34167	1	7840	7840		11.64	11.64	1	137590			47918	667	27455	27456	58679	58679					0.07829155434069435
TFRPKRKFEPG	11	Unmodified	_TFRPKRKFEPG_					0	0	0		ENSG00000120162|ENST00000262244|MOB3B;ENSG00000172081|ENST00000357066|MOB3A	ENSG00000120162|ENST00000262244|MOB3B	ENSG00000120162|ENST00000262244|MOB3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2480773925781	3	454.926211	1361.7568	0.34872	0.00015864	0.030046	1.3669E-05	0.37877	0.00017231	455.26059503478615	29.226	0.40544	29.226	29.035	29.441	0					18	14	2	0	0	0	0.33236	1	5225	5225		4.4062	1.9714	1	91166			47919	2932	27456	27457	58680	58680					0.09039547854035845
TFRRKRPE	8	Unmodified	_TFRRKRPE_					0	0	0		nc|ENSG00000079432|Q96RK0-2|CIC;ENSG00000079432|ENST00000681038|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.6611328125	2	545.317432	1088.62031	0.1722	9.3905E-05	-1.1746	-0.00064053	-1.0024	-0.00054663	545.3164936795789	96.883	0.64349	96.883	96.688	97.331	0					94	61	2	0	0	0	0.34272	1	25918	25918		7.9102	5.6074	1	125390			47920	1134	27457	27458	58681	58681					0.07954478414194455
TFRRKRPE	8	Unmodified	_TFRRKRPE_					0	0	0		nc|ENSG00000079432|Q96RK0-2|CIC;ENSG00000079432|ENST00000681038|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.660888671875	2	545.317432	1088.62031	0.063274	3.4504E-05	-0.85552	-0.00046653	-0.79225	-0.00043203	545.3166056954653	99.689	0.54975	99.689	99.319	99.869	0					114	71	2	0	0	0	0.34272	1	26630	26630		7.9102	2.1497	1	92831			47921	1134	27457	27458	58682	58682					0.07954478414194455
TFRRKRPE	8	Unmodified	_TFRRKRPE_					0	0	0		nc|ENSG00000079432|Q96RK0-2|CIC;ENSG00000079432|ENST00000681038|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.6607666015625	2	545.317432	1088.62031	0.44708	0.0002438	-1.6718	-0.00091164	-1.2247	-0.00066783	545.3161561830593	96.953	0.29202	97.023	96.958	97.25	0.070465					44	29	2	0	0	0	0.34272	1	25942	25942		7.9102	0	1	84640			47922	1134	27457	27458	58683	58683					0.07954478414194455
TFRRKRPE	8	Unmodified	_TFRRKRPE_					0	0	0		nc|ENSG00000079432|Q96RK0-2|CIC;ENSG00000079432|ENST00000681038|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.9954833984375	2	545.317432	1088.62031	0.38471	0.00020979	-1.3354	-0.00072824	-0.95073	-0.00051845	545.3163460965809	99.598	0.41879	99.649	99.329	99.748	0.050896					88	56	2	0	0	0	0.34272	1	26586	26586		7.9102	7.9102	1	146800			47923	1134	27457	27458	58684	58684					0.07954478414194455
TFRSPEEVF	9	Unmodified	_TFRSPEEVF_					0	0	0		ENST00000487855.1_1_2:220145378-220147307:+|nuORF;ENST00000480537.5_1_2:220144555-220146923:+|nuORF;nc|ENSG00000135924|P25686-2|DNAJB2;ENST00000477917.5_1_2:220146297-220148118:+|nuORF;ENSG00000135924|ENST00000336576|DNAJB2	ENST00000487855.1_1_2:220145378-220147307:+|nuORF	ENST00000487855.1_1_2:220145378-220147307:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7587890625	2	556.274564	1110.53457	0.11586	6.4448E-05	-0.13752	-7.6498E-05	-0.021663	-1.205E-05	556.2744008856316	57.335	0.87357	57.318	56.867	57.741	-0.0172					95	31	4	0	0	0	0.27532	1	13735	13735		12.532	0	1	6912800			47924	3921	27458	27459	58685	58685					-0.016271512820139833
TFRVSSPVVV	10	Unmodified	_TFRVSSPVVV_					0	0	0			REV__ENSG00000138375|ENST00000357276|SMARCAL1	REV__ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2803344726562	2	545.816399	1089.61824	0.85232	0.00046521	-1.3026	-0.00071096	-0.45024	-0.00024575	545.8154720099408	54.887	0.48225	54.887	54.526	55.008	0					28	17	2	0	0	0	0.29038	1	13032	13032		24.021	2.2739	1	429930	+		47925	15922	27459	27460	58686	58686					0.07702004885709357
TFRVSSPVVV	10	Unmodified	_TFRVSSPVVV_					0	0	0			REV__ENSG00000138375|ENST00000357276|SMARCAL1	REV__ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.280517578125	2	545.816399	1089.61824	0.88936	0.00048543	-1.5132	-0.00082595	-0.62388	-0.00034053	545.8153591102862	54.83	0.61507	54.894	54.566	55.181	0.063202					29	22	2	0	0	0	0.29038	1	13003	13003		24.021	2.2739	1	489420	+		47926	15922	27459	27460	58687	58687					0.07702004885709357
TFRWRRHHHRL	11	Unmodified	_TFRWRRHHHRL_					0	0	0			REV__nc|ENSG00000177663|Q96F46-2|IL17RA	REV__nc|ENSG00000177663|Q96F46-2|IL17RA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.8002319335938	3	534.631014	1600.87121	0.012911	6.9025E-06	-3.8846	-0.0020768	-3.8717	-0.0020699	534.9632470108073	35.33	0.13544	35.405	35.346	35.481	0.075306					6	4	2	0	0	0	0.33336	1	7047	7047		1.1098	0.65524	1	112030	+		47927	18000	27460	27461	58688	58688					0.09481295179330118
TFRWRRHHHRL	11	Unmodified	_TFRWRRHHHRL_					0	0	0			REV__nc|ENSG00000177663|Q96F46-2|IL17RA	REV__nc|ENSG00000177663|Q96F46-2|IL17RA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	534.631014	1600.87121	-0.12821	-6.8548E-05	-3.7805	-0.0020212	-3.9087	-0.0020897	534.9634695757869	35.366	0.15924	35.443	35.308	35.467	0.077377	0.018895	5.7051E-05	NaN	1.1098	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148950	+		47928	18000	27460	27461							0.09481295179330118
TFRYYAGWAD	10	Unmodified	_TFRYYAGWAD_					0	0	0		nc|ENSG00000128918|O94788-4|ALDH1A2;nc|ENSG00000128918|O94788-2|ALDH1A2;nc|ENSG00000128918|O94788-3|ALDH1A2;ENSG00000128918|ENST00000249750|ALDH1A2	nc|ENSG00000128918|O94788-4|ALDH1A2	nc|ENSG00000128918|O94788-4|ALDH1A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.2828369140625	2	625.285463	1248.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.85	1	114.87	114.37	115.37	0.016708								0	0	0	0.38189	1	29859	29859		1.1933	0.59184	1				47929	3400	27461	27462	58689	58689					-0.057963465334296416
TFSDVEAHF	9	Unmodified	_TFSDVEAHF_					0	0	0		ZNF280C|p.K489Rfs*8|1|0.21|ENSG00000056277|chrX:130220410-130220410|T/-|frameshift_variant;ENSG00000056277|ENST00000370978|ZNF280C	ZNF280C|p.K489Rfs*8|1|0.21|ENSG00000056277|chrX:130220410-130220410|T/-|frameshift_variant	ZNF280C|p.K489Rfs*8|1|0.21|ENSG00000056277|chrX:130220410-130220410|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3024291992188	2	526.737814	1051.46108	0.50847	0.00026783	-0.14568	-7.6734E-05	0.3628	0.0001911	526.7376264559505	49.831	0.66719	49.831	49.6	50.267	0					48	24	3	0	0	0	0.25066	1	11599	11599		7.2892	1.5288	1	366820			47930	712	27462	27463	58690	58690					-0.06259699724478196
TFSDVEAHF	9	Unmodified	_TFSDVEAHF_					0	0	0		ZNF280C|p.K489Rfs*8|1|0.21|ENSG00000056277|chrX:130220410-130220410|T/-|frameshift_variant;ENSG00000056277|ENST00000370978|ZNF280C	ZNF280C|p.K489Rfs*8|1|0.21|ENSG00000056277|chrX:130220410-130220410|T/-|frameshift_variant	ZNF280C|p.K489Rfs*8|1|0.21|ENSG00000056277|chrX:130220410-130220410|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	526.737814	1051.46108	0.55856	0.00029421	-0.44511	-0.00023446	0.11345	5.9758E-05	526.7374370347004	49.847	0.56844	49.892	49.645	50.213	0.044891	0.045391	-7.198E-05	NaN	7.2892	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	482410			47931	712	27462	27463							-0.06259699724478196
TFSDVEAHF	9	Unmodified	_TFSDVEAHF_					0	0	0		ZNF280C|p.K489Rfs*8|1|0.21|ENSG00000056277|chrX:130220410-130220410|T/-|frameshift_variant;ENSG00000056277|ENST00000370978|ZNF280C	ZNF280C|p.K489Rfs*8|1|0.21|ENSG00000056277|chrX:130220410-130220410|T/-|frameshift_variant	ZNF280C|p.K489Rfs*8|1|0.21|ENSG00000056277|chrX:130220410-130220410|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	526.737814	1051.46108	0.64445	0.00033946	-0.45719	-0.00024082	0.18726	9.8638E-05	526.7374763085987	49.797	0.84665	49.817	49.591	50.437	0.020691	-0.029457	-8.4703E-05	NaN	7.2892	45	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353120			47932	712	27462	27463							-0.06259699724478196
TFSDVTFKL	9	Unmodified	_TFSDVTFKL_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2821655273438	2	529.281857	1056.54916	0.48377	0.00025605	0.47639	0.00025215	0.96016	0.0005082	529.2819482294574	62.079	1.0371	62.079	61.652	62.689	0					80	38	3	0	0	0	0.0073901	1	15320	15320		83.429	52.792	1	877430			47933	982	27463	27464	58691	58691					0.02314920866160719
TFSDVTFKL	9	Unmodified	_TFSDVTFKL_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2825317382812	2	529.281857	1056.54916	0.19315	0.00010223	0.84091	0.00044508	1.0341	0.00054731	529.282303017229	62.054	0.9211	62.151	61.817	62.738	0.096985					76	33	3	0	0	0	0.0038965	1	15235	15235		110.55	52.831	1	947690			47934	982	27463	27464	58692	58692					0.02314920866160719
TFSDVTFKL	9	Unmodified	_TFSDVTFKL_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2820434570312	2	529.281857	1056.54916	0.39459	0.00020885	0.34593	0.00018309	0.74052	0.00039194	529.281980500862	62.025	0.86985	62.016	61.7	62.57	-0.0085526					75	31	3	0	0	0	0.0038965	1	15306	15306		100.09	58.135	1	872180			47935	982	27463	27464	58693	58693					0.02314920866160719
TFSGFVTTKV	10	Unmodified	_TFSGFVTTKV_					0	0	0		nc|ENSG00000125037|Q9P0I2-2|EMC3;ENSG00000125037|ENST00000245046|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF	nc|ENSG00000125037|Q9P0I2-2|EMC3	nc|ENSG00000125037|Q9P0I2-2|EMC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.7954711914062	2	543.795132	1085.57571	0.73178	0.00039794	-0.70191	-0.00038169	0.02987	1.6243E-05	543.7947865079776	41.4	1.4402	41.497	41.093	42.533	0.096626					84	54	3	0	0	0	0.36786	1	9032	9032		9.3831	0	1	5539400			47936	3190	27464	27465	58694	58694					0.036346097574551095
TFSLVLGGVFF	11	Unmodified	_TFSLVLGGVFF_					0	0	0		ENST00000463363.1_1_2:85826201-85827045:-|nuORF	ENST00000463363.1_1_2:85826201-85827045:-|nuORF	ENST00000463363.1_1_2:85826201-85827045:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8282470703125	2	593.828975	1185.6434	0.42107	0.00025004	-0.43552	-0.00025862	-0.014452	-8.5817E-06	593.8282747995413	80.705	0.54766	80.705	80.513	81.06	0					37	25	2	0	0	0	0.41411	1	21000	21000		9.3831	1.7742	1	236930			47937	10764	27465	27466	58695	58695					0.058000596882720856
TFSVPRPRL	9	Unmodified	_TFSVPRPRL_					0	0	0			REV__ENST00000554614.2_1_14:73712316-73712565:-|nuORF	REV__ENST00000554614.2_1_14:73712316-73712565:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2794189453125	2	536.816733	1071.61891	0.58772	0.0003155	1.0063	0.00054021	1.594	0.00085571	537.3197802459531	45.079	0.13074	45.079	44.991	45.121	0					6	4	2	0	0	0	0.24311	1	10052	10052		16.942	5.302	1	53683	+		47938	22235	27466	27467	58696	58696					0.08596844325415987
TFSVPRPRL	9	Unmodified	_TFSVPRPRL_					0	0	0			REV__ENST00000554614.2_1_14:73712316-73712565:-|nuORF	REV__ENST00000554614.2_1_14:73712316-73712565:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	536.816733	1071.61891	0.66315	0.00035599	-0.77934	-0.00041836	-0.11618	-6.2368E-05	536.8159641488141	44.872	0.10468	44.947	44.883	44.988	0.07505	-0.06577	-0.00051833	NaN	16.942	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76168	+		47939	22235	27466	27467							0.08596844325415987
TFSVSSHLF	9	Unmodified	_TFSVSSHLF_					0	0	0		ENSG00000143067|ENST00000421812|ZNF697	ENSG00000143067|ENST00000421812|ZNF697	ENSG00000143067|ENST00000421812|ZNF697	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7869873046875	2	512.758549	1023.50255	0.60462	0.00031002	-0.085975	-4.4084E-05	0.51864	0.00026594	512.7577819906836	58.357	0.5947	58.342	58.09	58.684	-0.014271					41	21	4	0	0	0	0.11486	1	14146	14146		48.346	8.3961	1	264150			47940	4477	27467	27468	58697	58697					-0.008265189651410765
TFSVSSHLF	9	Unmodified	_TFSVSSHLF_					0	0	0		ENSG00000143067|ENST00000421812|ZNF697	ENSG00000143067|ENST00000421812|ZNF697	ENSG00000143067|ENST00000421812|ZNF697	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	512.758549	1023.50255	0.40289	0.00020659	0.41724	0.00021394	0.82013	0.00042053	512.7582023264096	58.249	0.54945	58.249	58.075	58.624	0	-0.04682	0.00020078	NaN	48.346	45	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217070			47941	4477	27467	27468							-0.008265189651410765
TFTEVLDSAL	10	Unmodified	_TFTEVLDSAL_					0	0	0		ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7702026367188	2	548.282054	1094.54956	0.54197	0.00029715	-3.304	-0.0018115	-2.762	-0.0015144	548.2799688238463	57.71	0.84177	57.796	57.598	58.44	0.085617					68	30	4	0	0	0	0.28434	1	13913	13913		13.906	0	1	2760600			47942	8181	27468	27469	58698	58698					0.006062957953190562
TFTEVLDSAL	10	Unmodified	_TFTEVLDSAL_					0	0	0		ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	ENSG00000203668|ENST00000366553|CHML	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7721557617188	2	548.282054	1094.54956	0.67546	0.00037035	-2.6933	-0.0014767	-2.0178	-0.0011063	548.280367495168	58.051	0.8875	58.033	57.741	58.628	-0.0172					81	32	4	0	0	0	0.25875	1	14024	14024		25.399	8.457	1	2745000			47943	8181	27468	27469	58699	58699					0.006062957953190562
TFTFSHATF	9	Unmodified	_TFTFSHATF_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.7509155273438	2	529.750724	1057.4869	0.69001	0.00036553	-0.068368	-3.6218E-05	0.62164	0.00032931	529.7504909358913	55.105	1.2026	55.105	54.761	55.963	0					112	43	4	0	0	0	6.7091E-11	4	13135	13091;13135;13185;13235		181.33	130.81	1	6521100			47944	8254	27469	27470	58700;58701;58702;58703	58701					-0.03954805482203483
TFTFSHATF	9	Unmodified	_TFTFSHATF_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.7511596679688	2	529.750724	1057.4869	0.67199	0.00035599	-0.12131	-6.4262E-05	0.55069	0.00029173	529.7504761929456	55.034	1.2903	55.097	54.722	56.013	0.063202					119	47	4	0	0	0	4.5012E-11	4	13120	13069;13120;13170;13225		188.58	127.22	1	6293300			47945	8254	27469	27470	58704;58705;58706;58707	58705					-0.03954805482203483
TFTFSHATF	9	Unmodified	_TFTFSHATF_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7510986328125	2	529.750724	1057.4869	0.5953	0.00031536	0.0211	1.1177E-05	0.6164	0.00032654	529.7505023478143	55.322	1.2903	55.303	54.976	56.267	-0.019081					115	47	4	0	0	0	1.8851E-11	3	13197	13197;13242;13303		197.17	119.02	1	7639400			47946	8254	27469	27470	58708;58709;58710	58708					-0.03954805482203483
TFTKLEPKF	9	Unmodified	_TFTKLEPKF_					0	0	0			REV__ENST00000346085.9_2_6:157098516-157098651:+|nuORF	REV__ENST00000346085.9_2_6:157098516-157098651:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2688598632812	2	555.813325	1109.6121	0.31498	0.00017507	-2.1592	-0.0012001	-1.8442	-0.001025	556.3125436490042	71.028	0.53038	71.088	70.904	71.434	0.060783					26	18	2	0	0	0	0.24688	1	18112	18112		10.074	2.1638	1	436610	+		47947	20150	27470	27471	58711	58711					0.061674866541807205
TFTQKFEQF	9	Unmodified	_TFTQKFEQF_					0	0	0			REV__nc|ENSG00000169876|Q685J3-2|MUC17	REV__nc|ENSG00000169876|Q685J3-2|MUC17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.7744750976562	2	588.290214	1174.56587	0.27486	0.0001617	-1.3732	-0.00080786	-1.0984	-0.00064617	588.2892657310302	69.884	0.42998	69.884	69.673	70.103	0					19	15	2	0	0	0	0.25066	1	17660	17660		7.2892	0	1	132410	+		47948	17546	27471	27472	58712	58712					-0.014425782479065674
TFTQKFEQF	9	Unmodified	_TFTQKFEQF_					0	0	0			REV__nc|ENSG00000169876|Q685J3-2|MUC17	REV__nc|ENSG00000169876|Q685J3-2|MUC17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.816162109375	2	588.290214	1174.56587	0.36962	0.00021744	0.68694	0.00040412	1.0566	0.00062157	588.2894167668408	68.039	0.31781	68.039	67.783	68.101	0					23	10	3	0	0	0	0.24289	1	17107	17107		18.146	1.0335	1	271010	+		47949	17546	27471	27472	58713	58713					-0.014425782479065674
TFTSFHQTLK	10	Unmodified	_TFTSFHQTLK_					0	0	0		nc|ENSG00000049246|P56645|PER3;ENSG00000049246|ENST00000377532|PER3	nc|ENSG00000049246|P56645|PER3	nc|ENSG00000049246|P56645|PER3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.7711791992188	2	605.316763	1208.61897	0.49226	0.00029797	-2.441	-0.0014776	-1.9487	-0.0011796	605.3155130888493	45.555	0.54174	45.62	45.358	45.9	0.065048					40	19	3	0	0	0	0.31143	1	10138	10138		12.241	0	1	406300			47950	648	27472	27473	58714	58714					0.023007995347597898
TFVLFGPLF	9	Unmodified	_TFVLFGPLF_					0	0	0			REV__ENST00000467008.5_1_6:16739520-16739679:-|nuORF	REV__ENST00000467008.5_1_6:16739520-16739679:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2842407226562	2	520.794404	1039.57425	0.53517	0.00027871	0.51889	0.00027024	1.0541	0.00054895	520.7945450681021	76.356	3.3211	76.325	75.184	78.505	-0.031487					196	122	3	0	0	0	0.23775	1	19867	19867		18.135	1.1927	1	1007500	+		47951	21294	27473	27474	58715	58715					0.0560502045937028
TFVLFGPLF	9	Unmodified	_TFVLFGPLF_					0	0	0			REV__ENST00000467008.5_1_6:16739520-16739679:-|nuORF	REV__ENST00000467008.5_1_6:16739520-16739679:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	520.794404	1039.57425	0.40008	0.00020836	0.6807	0.0003545	1.0808	0.00056286	520.7946203154378	76.289	3.0615	76.289	75.449	78.511	0	-0.081369	6.2882E-05	NaN	18.135	192	112	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1419100	+		47952	21294	27473	27474							0.0560502045937028
TFVNQTFNLF	10	Unmodified	_TFVNQTFNLF_					0	0	0			REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6	REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	615.8128662109375	2	615.811313	1229.60807	0.24432	0.00015045	1.7404	0.0010718	1.9847	0.0012222	615.8126787957357	66.727	1.4729	66.727	66.369	67.842	0					118	50	4	0	0	0	0.28877	2	16755	16755;16808		24.991	4.5373	1	2830700	+		47953	17815	27474	27475	58716;58717	58716					0.002453971604609251
TFVPFLGLF	9	Unmodified	_TFVPFLGLF_					0	0	0			REV__ENSG00000109066|ENST00000335464|TMEM104	REV__ENSG00000109066|ENST00000335464|TMEM104	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2846069335938	2	520.794404	1039.57425	0.53517	0.00027871	0.51889	0.00027024	1.0541	0.00054895	520.7945450681021	76.356	3.3211	76.325	75.184	78.505	-0.031487					196	122	3	0	0	0	0.23783	1	20044	20044		18.135	0	1	1007500	+		47954	14625	27475	27476	58718	58718					0.0560502045937028
TFVSYALLPVR	11	Unmodified	_TFVSYALLPVR_					0	0	0		ENSG00000164742|ENST00000297323|ADCY1	ENSG00000164742|ENST00000297323|ADCY1	ENSG00000164742|ENST00000297323|ADCY1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3689575195312	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.09	1	105.09	104.59	105.59	0.0018463								0	0	0	0.37382	1	27867	27867		2.9952	0.26005	1				47955	5872	27476	27477	58719	58719					0.09618822499624002
TFVYMIQPLE	10	Unmodified	_TFVYMIQPLE_					0	0	0		ADAM23|p.E232Q|1|0.03|ENSG00000114948|chr2:206543290-206543290|G/C|missense_variant	ADAM23|p.E232Q|1|0.03|ENSG00000114948|chr2:206543290-206543290|G/C|missense_variant	ADAM23|p.E232Q|1|0.03|ENSG00000114948|chr2:206543290-206543290|G/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.817626953125	2	620.81775	1239.62095	-0.097401	-6.0468E-05	-0.0011287	-7.0071E-07	-0.09853	-6.1169E-05	620.8177754180732	17.39	1.3301	17.273	16.937	18.267	-0.11739					159	46	5	0	0	0	0.3994	1	1752	1752		1.4819	0.41044	1	3614800			47956	8	27477	27478	58720	58720					0.010720922283326217
TFWFPPTPH	9	Unmodified	_TFWFPPTPH_					0	0	0			REV__ENST00000461108.5_1_3:52003444-52003858:-|nuORF	REV__ENST00000461108.5_1_3:52003444-52003858:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7992553710938	2	565.276909	1128.53927	-0.027105	-1.5322E-05	1.8703	0.0010572	1.8431	0.0010419	565.2776980427149	15.235	0.25967	15.171	15.1	15.36	-0.064413					10	8	2	0	0	0	0.31417	1	988	988		6.7232	2.3939	1	45778	+		47957	21212	27478	27479	58721	58721					-0.01986222348591582
TFWIPLMD	8	Unmodified	_TFWIPLMD_					0	0	0			REV__NLGN4X|p.R765Lfs*14|1|0.04|ENSG00000146938|chrX:5892979-5892980|-/AACATAGAAGA|frameshift_variant	REV__NLGN4X|p.R765Lfs*14|1|0.04|ENSG00000146938|chrX:5892979-5892980|-/AACATAGAAGA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2526550292969	2	511.754421	1021.49429	0.25102	0.00012846	1.3471	0.0006894	1.5981	0.00081786	512.2566469200247	92.327	0.69995	92.417	91.824	92.524	0.089195					53	46	2	0	0	0	0.34408	1	24549	24549		2.3027	0.24298	1	74014	+		47958	16365	27479	27480	58722	58722					-0.015597892061236962
TFWIPLMD	8	Unmodified	_TFWIPLMD_					0	0	0			REV__NLGN4X|p.R765Lfs*14|1|0.04|ENSG00000146938|chrX:5892979-5892980|-/AACATAGAAGA|frameshift_variant	REV__NLGN4X|p.R765Lfs*14|1|0.04|ENSG00000146938|chrX:5892979-5892980|-/AACATAGAAGA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	511.754421	1021.49429	0.25302	0.00012948	1.4403	0.00073709	1.6933	0.00086657	512.2564983705272	92.646	0.17122	92.646	92.508	92.679	0	0.1311	0.00014982	NaN	2.3027	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55832	+		47959	16365	27479	27480							-0.015597892061236962
TFWIPLMD	8	Unmodified	_TFWIPLMD_					0	0	0			REV__NLGN4X|p.R765Lfs*14|1|0.04|ENSG00000146938|chrX:5892979-5892980|-/AACATAGAAGA|frameshift_variant	REV__NLGN4X|p.R765Lfs*14|1|0.04|ENSG00000146938|chrX:5892979-5892980|-/AACATAGAAGA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	511.754421	1021.49429	0.3945	0.00020188	1.1871	0.00060751	1.5816	0.0008094	511.7550132087584	92.481	0.48165	92.482	92.232	92.714	0.00046539	-0.033047	-0.00010933	NaN	2.3027	43	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81164	+		47960	16365	27479	27480							-0.015597892061236962
TFYAVNTL	8	Unmodified	_TFYAVNTL_					0	0	0			REV__ENSG00000151012|ENST00000280612|SLC7A11	REV__ENSG00000151012|ENST00000280612|SLC7A11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.27593994140625	2	464.742368	927.470183	0.088802	4.127E-05	0.14634	6.8009E-05	0.23514	0.00010928	464.7423354726541	49.83	0.41459	49.875	49.669	50.084	0.044891					24	15	2	0	0	0	0.34131	1	11514	11514		12.532	0	1	289380	+		47961	16521	27480	27481	58723	58723					0.003546936318684857
TFYAVNTL	8	Unmodified	_TFYAVNTL_					0	0	0			REV__ENSG00000151012|ENST00000280612|SLC7A11	REV__ENSG00000151012|ENST00000280612|SLC7A11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.27630615234375	2	464.742368	927.470183	0.29277	0.00013606	0.41202	0.00019148	0.70479	0.00032755	464.7424642259151	49.906	0.69484	49.927	49.457	50.152	0.020691					41	25	2	0	0	0	0.34131	1	11495	11495		12.532	0	1	295120	+		47962	16521	27480	27481	58724	58724					0.003546936318684857
TFYGPVKK	8	Unmodified	_TFYGPVKK_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;CUL3|p.T583*|1|0.23|ENSG00000036257|chr2:224495927-224495928|-/TA|frameshift_variant;nc|ENSG00000036257|Q13618-3|CUL3;ENST00000487558.1_1_2:225360464-225362517:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3;ENST00000487558.1_1_2:225360464-225362517:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.8003845214844	2	470.268553	938.522553	0.0014982	7.0454E-07	-0.82686	-0.00038885	-0.82536	-0.00038814	470.26836481358123	24.463	0.30042	24.463	24.248	24.548	0					14	9	2	0	0	0	0.34092	1	3740	3740		13.508	8.2772	1	32214			47963	577;11121	27481	27482	58725	58725					0.05083276765469691
TFYILVFV	8	Unmodified	_TFYILVFV_					0	0	0		nc|ENSG00000163870|Q86W33-2|TPRA1;nc|ENSG00000163870|Q86W33-3|TPRA1;ENSG00000163870|ENST00000355552|TPRA1	nc|ENSG00000163870|Q86W33-2|TPRA1	nc|ENSG00000163870|Q86W33-2|TPRA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.63446044921875	2	501.288954	1000.56336	0.26234	0.00013151	2.7491	0.0013781	3.0115	0.0015096	501.28988334866324	93.076	0.19476	93.076	93.001	93.196	0					23	15	2	0	0	0	0.34092	1	24766	24766		4.756	0	1	43632			47964	5746	27482	27483	58726	58726					0.06309618085106194
TFYLIALPF	9	Unmodified	_TFYLIALPF_					0	0	0		ENST00000328902.9_1_7:150324506-150324674:-|nuORF	ENST00000328902.9_1_7:150324506-150324674:-|nuORF	ENST00000328902.9_1_7:150324506-150324674:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8078002929688	2	542.807511	1083.60047	0.38438	0.00020864	0.65225	0.00035405	1.0366	0.00056269	542.8075942277254	76.282	1.8296	76.282	75.154	76.983	0					115	66	3	0	0	0	0.30166	1	19679	19679		8.5933	0.68312	1	417460			47965	9433	27483	27484	58727	58727					0.06201289630848805
TFYLIALPF	9	Unmodified	_TFYLIALPF_					0	0	0		ENST00000328902.9_1_7:150324506-150324674:-|nuORF	ENST00000328902.9_1_7:150324506-150324674:-|nuORF	ENST00000328902.9_1_7:150324506-150324674:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8079223632812	2	542.807511	1083.60047	0.77384	0.00042005	0.16144	8.7628E-05	0.93528	0.00050768	542.807442506029	78.395	3.3081	78.395	77.204	80.513	0					287	127	4	0	0	0	0.32733	1	20865	20865		4.756	0.42677	1	1734500			47966	9433	27483	27484	58728	58728					0.06201289630848805
TFYLIALPF	9	Unmodified	_TFYLIALPF_					0	0	0		ENST00000328902.9_1_7:150324506-150324674:-|nuORF	ENST00000328902.9_1_7:150324506-150324674:-|nuORF	ENST00000328902.9_1_7:150324506-150324674:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8074951171875	2	542.807511	1083.60047	0.93496	0.0005075	-0.0086134	-4.6754E-06	0.92634	0.00050283	542.8073887217688	78.34	3.3554	78.31	77.238	80.594	-0.030434					321	127	4	0	0	0	0.30623	1	20857	20857		7.9102	7.9102	1	1617500			47967	9433	27483	27484	58729	58729					0.06201289630848805
TGAAGVRQGRR	11	Unmodified	_TGAAGVRQGRR_					0	0	0			REV__ENST00000324685.10_1_16:30786352-30786451:+|nuORF	REV__ENST00000324685.10_1_16:30786352-30786451:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8209228515625	2	564.82087	1127.62719	0.2471	0.00013957	0.74269	0.00041949	0.98978	0.00055905	564.8211007283917	80.441	2.0633	80.441	79.495	81.558	0					209	86	3	0	0	0	0.46655	1	20727	20727		2.4985	2.4985	1	2302400	+		47968	19988	27484	27485	58730	58730					0.06847791294762828
TGARRLQK	8	Unmodified	_TGARRLQK_					0	0	0		ENST00000378300.9_1_9:35682437-35682695:-|nuORF	ENST00000378300.9_1_9:35682437-35682695:-|nuORF	ENST00000378300.9_1_9:35682437-35682695:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2855529785156	2	465.2856	928.556647	0.23855	0.00011099	-0.25256	-0.00011751	-0.014009	-6.5184E-06	465.2854501627056	79.855	1.2792	79.826	79.371	80.65	-0.028931					132	46	4	0	0	0	0.46022	1	20834	20834		2.3027	0	1	6764700			47969	9956	27485	27486	58731	58731					0.08951117977073864
TGASLAWVK	9	Unmodified	_TGASLAWVK_					0	0	0			REV__ENST00000493559.1_1_9:123515564-123538496:-|nuORF	REV__ENST00000493559.1_1_9:123515564-123538496:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.75604248046875	2	466.763635	931.512717	-0.089535	-4.1792E-05	1.4942	0.00069743	1.4047	0.00065564	466.76440113450536	22.445	0.65358	22.357	22.166	22.82	-0.087608					34	23	2	0	0	0	0.31417	1	3281	3281		6.7232	0	1	87193	+		47970	15040	27486	27487	58732	58732					0.04422088760088627
TGASLAWVK	9	Unmodified	_TGASLAWVK_					0	0	0			REV__ENST00000493559.1_1_9:123515564-123538496:-|nuORF	REV__ENST00000493559.1_1_9:123515564-123538496:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2563171386719	2	466.763635	931.512717	-0.089535	-4.1792E-05	1.4942	0.00069743	1.4047	0.00065564	466.76440113450536	22.445	0.65358	22.357	22.166	22.82	-0.087608					34	23	2	0	0	0	0.24688	1	3215	3215		14.838	0.93222	1	87193	+		47971	15040	27486	27487	58733	58733					0.04422088760088627
TGAVLPVQL	9	Unmodified	_TGAVLPVQL_					0	0	0			REV__nc|ENSG00000242372|P56537-2|EIF6	REV__nc|ENSG00000242372|P56537-2|EIF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.7657165527344	2	449.273835	896.533118	0.24034	0.00010798	0.21404	9.6161E-05	0.45438	0.00020414	449.27358751803297	62.841	0.73323	62.937	62.712	63.445	0.095722					30	26	2	0	0	0	0.25202	1	15635	15635		10.824	1.4765	1	126050	+		47972	19183	27487	27488	58734	58734					0.08071259419898524
TGDPAVYYDF	10	Unmodified	_TGDPAVYYDF_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2505493164062	2	574.250754	1146.48696	0.16783	9.6374E-05	-0.32952	-0.00018923	-0.1617	-9.2856E-05	574.2503679530096	97.911	0.63573	97.972	97.691	98.327	0.061523					173	75	3	0	0	0	0.29978	1	26195	26195		20.454	0	1	652010	+		47973	13520	27488	27489	58735	58735					-0.08042850272863689
TGDPAVYYDF	10	Unmodified	_TGDPAVYYDF_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.2506713867188	2	574.250754	1146.48696	0.22302	0.00012807	-0.51919	-0.00029815	-0.29617	-0.00017008	574.2504662659993	98.072	0.99652	98.065	97.739	98.736	-0.0068207					198	109	3	0	0	0	0.29978	2	26232	26232;26272		20.454	20.454	1	693860	+		47974	13520	27488	27489	58736;58737	58736					-0.08042850272863689
TGEIKVNNA	9	Unmodified	_TGEIKVNNA_					0	0	0		PCDHA10|p.D305N|1|0.47|ENSG00000250120|chr5:140856961-140856961|G/A|missense_variant	PCDHA10|p.D305N|1|0.47|ENSG00000250120|chr5:140856961-140856961|G/A|missense_variant	PCDHA10|p.D305N|1|0.47|ENSG00000250120|chr5:140856961-140856961|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.2707824707031	2	473.253631	944.49271	0.009411	4.4538E-06	-0.17395	-8.2324E-05	-0.16454	-7.787E-05	473.25348402094403	16.771	0.77851	16.656	16.362	17.14	-0.11434					59	27	3	0	0	0	0.29638	1	1459	1459		9.3831	0	1	239360			47975	13041	27489	27490	58738	58738					0.018242930294604776
TGELISIHK	9	Unmodified	_TGELISIHK_					0	0	0			REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7579040527344	2	499.287474	996.560395	0.25507	0.00012735	0.16292	8.1345E-05	0.41799	0.0002087	499.28746296404324	28.605	0.29034	28.601	28.495	28.785	-0.0042572					14	9	2	0	0	0	0.25706	1	5006	5006		6.7232	0.51738	1	115510	+		47976	15008	27490	27491	58739	58739					0.06197742960284813
TGELRARVP	9	Unmodified	_TGELRARVP_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.30084228515625	2	499.790715	997.566878	0.27394	0.00013691	-0.010402	-5.1986E-06	0.26354	0.00013172	499.7906678150833	22.204	0.77948	22.103	21.944	22.723	-0.10034					65	28	3	0	0	0	0.28674	1	3217	3217		10.824	0	1	269650			47977	6063	27491	27492	58740	58740					0.06799680911649375
TGELRYPK	8	Unmodified	_TGELRYPK_					0	0	0		ENSG00000156414|ENST00000409874|TDRD9;nc|ENSG00000156414|Q8NDG6-2|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.2661437988281	2	482.266542	962.51853	-0.036075	-1.7398E-05	0.3519	0.00016971	0.31583	0.00015231	482.26667966269923	18.33	0.84142	18.271	18.004	18.846	-0.058172					40	29	2	0	0	0	0.45431	1	1887	1887		4.3292	0	1	58209			47978	5234	27492	27493	58741	58741					0.03577187271741877
TGELRYPK	8	Unmodified	_TGELRYPK_					0	0	0		ENSG00000156414|ENST00000409874|TDRD9;nc|ENSG00000156414|Q8NDG6-2|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	ENSG00000156414|ENST00000409874|TDRD9	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	482.266542	962.51853	-0.036075	-1.7398E-05	0.3519	0.00016971	0.31583	0.00015231	482.26667966269923	18.33	0.84142	18.271	18.004	18.846	-0.058172	0.012661	0.00014111	NaN	4.3292	40	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58209			47979	5234	27492	27493							0.03577187271741877
TGFAEGFLK	9	Unmodified	_TGFAEGFLK_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF	nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8004455566406	2	485.255643	968.496732	0.099916	4.8485E-05	0.5699	0.00027655	0.66982	0.00032503	485.2558621503488	52.231	0.37685	52.23	52.034	52.411	-0.00080872					24	13	2	0	0	0	0.23216	1	12233	12233		17.443	6.6187	1	201610			47980	12721	27493	27494	58742	58742					0.011223825231809315
TGFEMRAGFCK	11	Unmodified	_TGFEMRAGFCK_					0	0	0			REV__ENSG00000169299|ENST00000381967|PGM2	REV__ENSG00000169299|ENST00000381967|PGM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.91571044921875	3	416.195093	1245.56345	-0.68582	-0.00028543	0.005544	2.3074E-06	-0.68028	-0.00028313	416.19516847712384	35.16	0.63536	35.238	34.893	35.528	0.077377					57	22	3	0	0	0	0.33025	1	7035	7035		2.084	0	1	495270	+		47981	17509	27494	27495	58743	58743					-0.04951073248867033
TGFGKFAR	8	Unmodified	_TGFGKFAR_					0	0	0		nc|ENSG00000084110|P42357-2|HAL;ENSG00000084110|ENST00000261208|HAL	nc|ENSG00000084110|P42357-2|HAL	nc|ENSG00000084110|P42357-2|HAL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.9153137207031	2	442.24287	882.471186	-0.074194	-3.2812E-05	0.51684	0.00022857	0.44264	0.00019576	442.24285466429745	39.23	0.36079	39.323	39.137	39.497	0.09267					14	12	2	0	0	0	0.34039	1	8230	8230		15.847	7.2539	1	98312			47982	1241	27495	27496	58744	58744					0.025249527914184
TGFMVATFTF	10	Unmodified	_TGFMVATFTF_					0	0	0			REV__ZDHHC7|p.S280Hfs*5|1|0.38|ENSG00000153786|chr16:84976439-84976439|C/-|frameshift_variant	REV__ZDHHC7|p.S280Hfs*5|1|0.38|ENSG00000153786|chr16:84976439-84976439|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.25634765625	2	561.270435	1120.52632	0.4416	0.00024786	4.3498	0.0024414	4.7914	0.0026893	561.2742204955573	49.767	0.74992	49.811	49.593	50.343	0.044891					50	28	3	0	0	0	0.30958	1	11501	11501		19.257	2.3147	1	413940	+		47983	16633	27496	27497	58745	58745					-0.029124215229785477
TGFSSLFLK	9	Unmodified	_TGFSSLFLK_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2792053222656	2	500.279118	998.543683	0.2424	0.00012127	0.24132	0.00012073	0.48372	0.000242	500.2791109599699	61.759	0.93192	61.759	61.437	62.369	0					81	34	4	0	0	0	0.00051734	2	15203	15203;15279		128.93	76.664	1	1177400			47984	5889	27497	27498	58746;58747	58746					0.04435242074328016
TGFSSLFLK	9	Unmodified	_TGFSSLFLK_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.27923583984375	2	500.279118	998.543683	-0.055697	-2.7864E-05	0.6319	0.00031613	0.5762	0.00028826	500.2793377928672	61.661	0.8528	61.758	61.479	62.332	0.096985					82	30	4	0	0	0	0.0010968	2	15166	15166;15221		121.53	69.266	1	1164000			47985	5889	27497	27498	58748;58749	58748					0.04435242074328016
TGFSSLFLK	9	Unmodified	_TGFSSLFLK_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.27923583984375	2	500.279118	998.543683	0.00041	2.0511E-07	0.55946	0.00027988	0.55987	0.00028009	500.27926079415096	61.741	0.79357	61.732	61.425	62.219	-0.0085564					68	28	4	0	0	0	0.00019464	2	15179	15179;15236		133.05	80.784	1	1330400			47986	5889	27497	27498	58750;58751	58750					0.04435242074328016
TGFSYAFPK	9	Unmodified	_TGFSYAFPK_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3;ENST00000581642.1_1_17:80193878-80194172:+|nuORF;ENST00000584781.5_1_17:80193878-80195055:+|nuORF;ENST00000579572.1_1_17:80193878-80195110:+|nuORF	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.2557067871094	2	509.255643	1016.49673	0.76907	0.00039165	-0.0039343	-2.0036E-06	0.76514	0.00038965	509.2555615306959	50.659	0.62315	50.659	50.407	51.03	0					40	22	2	0	0	0	0.0010968	1	11754	11754		121.53	96.135	1	984090			47987	4390	27498	27499	58752	58752					-0.010856174768150595
TGFSYAFPK	9	Unmodified	_TGFSYAFPK_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3;ENST00000581642.1_1_17:80193878-80194172:+|nuORF;ENST00000584781.5_1_17:80193878-80195055:+|nuORF;ENST00000579572.1_1_17:80193878-80195110:+|nuORF	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2555847167969	2	509.255643	1016.49673	0.78097	0.00039771	-0.16254	-8.2775E-05	0.61843	0.00031494	509.2554518479473	50.622	0.69099	50.666	50.318	51.009	0.044891					44	24	2	0	0	0	0.0010968	1	11745	11745		121.53	96.135	1	919690			47988	4390	27498	27499	58753	58753					-0.010856174768150595
TGFSYAFPK	9	Unmodified	_TGFSYAFPK_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3;ENST00000581642.1_1_17:80193878-80194172:+|nuORF;ENST00000584781.5_1_17:80193878-80195055:+|nuORF;ENST00000579572.1_1_17:80193878-80195110:+|nuORF	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.2558288574219	2	509.255643	1016.49673	0.77485	0.0003946	-0.1484	-7.5574E-05	0.62645	0.00031902	509.25545541761875	50.733	0.64205	50.743	50.426	51.068	0.0095634					45	23	2	0	0	0	0.0028542	1	11759	11759		103.42	81.882	1	830250			47989	4390	27498	27499	58754	58754					-0.010856174768150595
TGGGFSHFV	9	Unmodified	_TGGGFSHFV_					0	0	0			REV__ENST00000530835.1_1_11:90015825-90016947:+|nuORF	REV__ENST00000530835.1_1_11:90015825-90016947:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.7165832519531	2	454.716685	907.418816	0.1553	7.0616E-05	-0.1269	-5.7705E-05	0.028395	1.2911E-05	454.7166539329575	80.58	0.67377	80.554	80.265	80.938	-0.026825					38	25	2	0	0	0	0.33018	1	20956	20956		4.3292	0.38484	1	222040	+		47990	15190	27499	27500	58755	58755					-0.03859630342185483
TGGGFSHFV	9	Unmodified	_TGGGFSHFV_					0	0	0			REV__ENST00000530835.1_1_11:90015825-90016947:+|nuORF	REV__ENST00000530835.1_1_11:90015825-90016947:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	454.716685	907.418816	0.046095	2.096E-05	0.686	0.00031194	0.73209	0.0003329	454.7170799026091	80.416	0.64218	80.481	80.264	80.906	0.065094	-0.051326	0.00028661	NaN	4.3292	37	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321420	+		47991	15190	27499	27500							-0.03859630342185483
TGGGFSHFV	9	Unmodified	_TGGGFSHFV_					0	0	0			REV__ENST00000530835.1_1_11:90015825-90016947:+|nuORF	REV__ENST00000530835.1_1_11:90015825-90016947:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	454.716685	907.418816	0.1553	7.0616E-05	-0.1269	-5.7705E-05	0.028395	1.2911E-05	454.7166539329575	80.58	0.67377	80.554	80.265	80.938	-0.026825	0.020939	-0.00045267	NaN	4.3292	38	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222040	+		47992	15190	27499	27500							-0.03859630342185483
TGGIALGSYLL	11	Unmodified	_TGGIALGSYLL_					0	0	0			REV__ENSG00000181656|ENST00000315033|GPR88	REV__ENSG00000181656|ENST00000315033|GPR88	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.311279296875	2	532.802957	1063.59136	0.44812	0.00023876	-0.39621	-0.0002111	0.051903	2.7654E-05	532.8028590915243	52.116	0.54688	52.116	51.836	52.382	0					46	19	3	0	0	0	0.24515	1	12249	12249		32.786	0	1	679750	+		47993	18160	27500	27501	58756	58756					0.062108962745242025
TGGIALGSYLL	11	Unmodified	_TGGIALGSYLL_					0	0	0			REV__ENSG00000181656|ENST00000315033|GPR88	REV__ENSG00000181656|ENST00000315033|GPR88	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.311279296875	2	532.802957	1063.59136	0.37759	0.00020118	-0.25454	-0.00013562	0.12305	6.556E-05	532.8030553183501	52.074	0.77204	52.125	51.565	52.337	0.050571					48	27	3	0	0	0	0.2237	1	12202	12202		38.176	0	1	671460	+		47994	18160	27500	27501	58757	58757					0.062108962745242025
TGGLPRWQLAL	11	Unmodified	_TGGLPRWQLAL_					0	0	0		ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	ENSG00000154174|ENST00000284320|TOMM70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.56817626953125	3	404.568024	1210.68224	-0.16193	-6.551E-05	1.9552	0.00079101	1.7933	0.0007255	404.9032206458922	28.666	0.64319	28.666	28.446	29.089	0					52	22	3	0	0	0	0.41411	1	5016	5016		4.7159	0.30977	1	177250			47995	5109	27501	27502	58758	58758					0.08532785042666546
TGGSHCPSPL	10	Unmodified	_TGGSHCPSPL_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.31298828125	2	478.218734	954.422915	0.26897	0.00012863	0.9945	0.00047559	1.2635	0.00060422	478.2191176555513	70.598	0.54903	70.659	70.406	70.955	0.060783					39	19	3	0	0	0	0.31267	1	17880	17880		14.838	1.3304	1	296160	+		47996	18625	27502	27503	58759	58759					-0.05611908910782404
TGIFLDLMHLK	11	Unmodified	_TGIFLDLMHLK_					0	0	0		ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.3612060546875	2	644.360116	1286.70568	0.61098	0.00039369	0.35205	0.00022685	0.96303	0.00062054	644.3602261000868	85.683	1.6634	85.683	85.04	86.703	0					113	64	3	0	0	0	0.46277	1	22470	22470		2.9952	2.9952	1	379910			47997	7861	27503	27504	58760	58760					0.07379462764970413
TGIFLDLMHLK	11	Unmodified	_TGIFLDLMHLK_					0	0	0		ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.3602905273438	2	644.360116	1286.70568	0.57628	0.00037133	0.34251	0.0002207	0.91878	0.00059203	644.3601280945454	87.68	1.9284	87.68	86.703	88.632	0					172	91	3	0	0	0	0.46277	3	23055	23055;23099;23145		2.9952	2.9952	1	500160			47998	7861	27503	27504	58761;58762;58763	58761					0.07379462764970413
TGIFLDLMHLK	11	Unmodified	_TGIFLDLMHLK_					0	0	0		ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.3592529296875	2	644.360116	1286.70568	0.57381	0.00036974	0.28407	0.00018304	0.85788	0.00055279	644.3602537406899	85.687	1.7793	85.771	85.001	86.781	0.084251					110	68	2	0	0	0	0.46277	1	22574	22574		2.9952	0.49676	1	293540			47999	7861	27503	27504	58764	58764					0.07379462764970413
TGIFLDLMHLK	11	Unmodified	_TGIFLDLMHLK_					0	0	0		ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.3603515625	2	644.360116	1286.70568	0.49541	0.00031922	0.44423	0.00028624	0.93964	0.00060547	644.3603440032442	87.403	2.6057	87.491	86.783	89.389	0.087097					308	124	3	0	0	0	0.46277	1	23300	23300		2.9952	0.26005	1	776620			48000	7861	27503	27504	58765	58765					0.07379462764970413
TGIFLDLMHLK	11	Unmodified	_TGIFLDLMHLK_					0	0	0		ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	644.3613891601562	2	644.360116	1286.70568	0.52284	0.0003369	0.50087	0.00032274	1.0237	0.00065964	644.36035809998	87.457	2.7609	87.451	86.557	89.318	-0.0056229					235	127	4	0	0	0	0.46277	1	22967	22967		2.9952	0.26005	1	900490			48001	7861	27503	27504	58766	58766					0.07379462764970413
TGINLPATQ	9	Unmodified	_TGINLPATQ_					0	0	0		CCDC183|p.M418T|1|0.39|ENSG00000213213|chr9:136806647-136806647|T/C|missense_variant	CCDC183|p.M418T|1|0.39|ENSG00000213213|chr9:136806647-136806647|T/C|missense_variant	CCDC183|p.M418T|1|0.39|ENSG00000213213|chr9:136806647-136806647|T/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.27130126953125	2	457.750724	913.486896	0.10233	4.6842E-05	0.05027	2.3011E-05	0.1526	6.9853E-05	457.7507187346924	52.354	0.5266	52.354	52.074	52.6	0					25	18	2	0	0	0	0.22674	1	12358	12358		12.241	0	1	586420			48002	95	27504	27505	58767	58767					0.026691945178072274
TGINLPATQ	9	Unmodified	_TGINLPATQ_					0	0	0		CCDC183|p.M418T|1|0.39|ENSG00000213213|chr9:136806647-136806647|T/C|missense_variant	CCDC183|p.M418T|1|0.39|ENSG00000213213|chr9:136806647-136806647|T/C|missense_variant	CCDC183|p.M418T|1|0.39|ENSG00000213213|chr9:136806647-136806647|T/C|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	457.750724	913.486896	0.16095	7.3673E-05	0.64874	0.00029696	0.80968	0.00037063	457.7507998546066	52.293	0.51865	52.343	52.06	52.579	0.050575	-0.0054409	0.00030511	NaN	12.241	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	464510			48003	95	27504	27505							0.026691945178072274
TGISDKPR	8	Unmodified	_TGISDKPR_					0	0	0		ENST00000322310.9_1_9:140084384-140084663:+|nuORF	ENST00000322310.9_1_9:140084384-140084663:+|nuORF	ENST00000322310.9_1_9:140084384-140084663:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.8929138183594	2	437.243067	872.47158	-0.18636	-8.1486E-05	-0.010657	-4.6596E-06	-0.19702	-8.6146E-05	437.24307832781966	22.408	0.71773	22.364	22.156	22.873	-0.044867					36	24	2	0	0	0	0.34272	1	3222	3222		7.9102	0	1	94978			48004	9388	27505	27506	58768	58768					0.03024327720618203
TGKEREVLK	9	Unmodified	_TGKEREVLK_					0	0	0			REV__nc|ENSG00000039560|Q9P0K7-4|RAI14	REV__nc|ENSG00000039560|Q9P0K7-4|RAI14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2933349609375	2	530.31148	1058.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.103	1	18.985	18.485	19.485	-0.11739								0	0	0	0.2489	1	2135	2135		6.7232	0	1		+		48005	13523	27506	27507	58769	58769					0.08144816880303551
TGKEREVLK	9	Unmodified	_TGKEREVLK_					0	0	0			REV__nc|ENSG00000039560|Q9P0K7-4|RAI14	REV__nc|ENSG00000039560|Q9P0K7-4|RAI14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3246459960938	2	530.31148	1058.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.331	1	19.215	18.715	19.715	-0.11592								0	0	0	0.25858	1	2204	2204		3.5965	0	1		+		48006	13523	27506	27507	58770	58770					0.08144816880303551
TGKKPHSVL	9	Unmodified	_TGKKPHSVL_					0	0	0			REV__ENST00000525110.1_1_11:45889192-45889438:+|nuORF	REV__ENST00000525110.1_1_11:45889192-45889438:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.3058166503906	2	483.790184	965.565815	0.041437	2.0047E-05	0.38162	0.00018463	0.42306	0.00020467	483.7902497180324	23.548	0.7723	23.548	23.145	23.917	0					53	26	3	0	0	0	0.22674	1	3431	3431		22.736	7.898	1	244360	+		48007	21946	27507	27508	58771	58771					0.08165466542754984
TGKKRRIKIK	10	Unmodified	_TGKKRRIKIK_					0	0	0			REV__ENST00000526019.5_1_6:130372531-130374029:+|nuORF	REV__ENST00000526019.5_1_6:130372531-130374029:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.1863098144531	3	409.950579	1226.82991	-0.3675	-0.00015066	-3.7579	-0.0015406	-4.1254	-0.0016912	409.9491466906972	14.34	0.11614	14.34	14.279	14.395	0					5	3	2	0	0	0	0.32068	1	702	702		3.5871	2.8894	1	7592.9	+		48008	21958	27508	27509	58772	58772					0.2255672136730027
TGLARDTHSFL	11	Unmodified	_TGLARDTHSFL_					0	0	0		ENST00000586659.5_1_19:11275740-11275920:-|nuORF	ENST00000586659.5_1_19:11275740-11275920:-|nuORF	ENST00000586659.5_1_19:11275740-11275920:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.5476989746094	3	406.547288	1216.62004	0.15364	6.2461E-05	0.56199	0.00022847	0.71562	0.00029094	406.5474636437629	33.704	0.94113	33.704	33.365	34.306	0					78	33	3	0	0	0	0.36257	1	6613	6613		9.2438	1.6348	1	827050			48009	12119	27509	27510	58773	58773					0.020390139036408073
TGLGQTQLK	9	Unmodified	_TGLGQTQLK_					0	0	0			REV__ENSG00000086619|ENST00000354619|ERO1B	REV__ENSG00000086619|ENST00000354619|ERO1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.2708435058594	2	473.271824	944.529095	-0.23446	-0.00011096	-1.1715	-0.00055445	-1.406	-0.00066541	473.27104153284273	12.934	0.2163	12.934	12.815	13.031	0					12	7	2	0	0	0	0.33911	1	288	288		2.9952	0	1	60716	+		48010	13978	27510	27511	58774	58774					0.05461169926184084
TGLGQTQLK	9	Unmodified	_TGLGQTQLK_					0	0	0			REV__ENSG00000086619|ENST00000354619|ERO1B	REV__ENSG00000086619|ENST00000354619|ERO1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	473.271824	944.529095	-0.23446	-0.00011096	-1.1715	-0.00055445	-1.406	-0.00066541	473.27104153284273	12.934	0.2163	12.934	12.815	13.031	0	0.0044705	-0.00022279	NaN	2.9952	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60716	+		48011	13978	27510	27511							0.05461169926184084
TGLGQTQLK	9	Unmodified	_TGLGQTQLK_					0	0	0			REV__ENSG00000086619|ENST00000354619|ERO1B	REV__ENSG00000086619|ENST00000354619|ERO1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	473.271824	944.529095	-0.11574	-5.4778E-05	-0.78395	-0.00037102	-0.8997	-0.0004258	473.2714691174295	13.007	0.22802	12.908	12.814	13.042	-0.099291	-0.021819	0.00014407	NaN	2.9952	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67442	+		48012	13978	27510	27511							0.05461169926184084
TGLGQTQLK	9	Unmodified	_TGLGQTQLK_					0	0	0			REV__ENSG00000086619|ENST00000354619|ERO1B	REV__ENSG00000086619|ENST00000354619|ERO1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	473.271824	944.529095	-0.18319	-8.67E-05	-0.53079	-0.00025121	-0.71399	-0.00033791	473.27121709616375	13.014	0.25567	12.947	12.791	13.047	-0.067495	0.017349	0.00038369	NaN	2.9952	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45322	+		48013	13978	27510	27511							0.05461169926184084
TGLGSFRLTL	10	Unmodified	_TGLGSFRLTL_					0	0	0		ENST00000426194.1_1_18:30351015-30353299:+|nuORF	ENST00000426194.1_1_18:30351015-30353299:+|nuORF	ENST00000426194.1_1_18:30351015-30353299:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3005981445312	2	532.808574	1063.60259	0.57663	0.00030724	-0.28802	-0.00015346	0.28861	0.00015378	532.8082323892933	57.068	0.52901	57.049	56.754	57.283	-0.019081					45	18	3	0	0	0	0.24359	1	13693	13693		24.991	1.8425	1	1017300			48014	10418	27511	27512	58775	58775					0.07333718368658992
TGLLHQRFRLL	11	Unmodified	_TGLLHQRFRLL_					0	0	0			REV__ENSG00000130193|ENST00000336138|THEM6	REV__ENSG00000130193|ENST00000336138|THEM6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2712707519531	3	451.941973	1352.80409	0.077378	3.497E-05	2.0968	0.00094762	2.1741	0.00098259	451.943094361007	49.442	1.1481	49.474	48.852	50	0.032043					104	41	4	0	0	0	0.33202	1	11443	11443		5.0475	2.4163	1	468690	+		48015	15442	27512	27513	58776	58776					0.14179827125030897
TGLMSGLTLL	10	Unmodified	_TGLMSGLTLL_					0	0	0			REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	REV__nc|ENSG00000148482|Q504Y0-5|SLC39A12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.80047607421875	2	503.286085	1004.55762	0.32021	0.00016116	-0.54801	-0.00027581	-0.2278	-0.00011465	503.285515355277	51.605	0.98225	51.615	51.246	52.228	0.0095634					64	36	2	0	0	0	0.34795	1	12162	12162		13.042	0.80181	1	846470	+		48016	16426	27513	27514	58777	58777					0.05552151511130887
TGLPDLLV	8	Unmodified	_TGLPDLLV_					0	0	0			REV__ENST00000493642.5_1_7:142991831-143002161:+|nuORF	REV__ENST00000493642.5_1_7:142991831-143002161:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.24737548828125	2	414.247286	826.48002	0.10189	4.2208E-05	1.2206	0.00050564	1.3225	0.00054785	414.24726107984293	64.92	0.76846	64.909	64.551	65.319	-0.01133					51	27	3	0	0	0	0.17761	1	16183	16183		46.921	0	1	438630	+		48017	21642	27514	27515	58778	58778					0.059838816372462134
TGLPWEPLF	9	Unmodified	_TGLPWEPLF_					0	0	0			REV__ENST00000572182.5_1_17:7534050-7536609:+|nuORF	REV__ENST00000572182.5_1_17:7534050-7536609:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7626342773438	2	530.279118	1058.54368	0.62417	0.00033098	-0.12016	-6.3718E-05	0.50401	0.00026727	530.2793240494225	86.735	3.0418	86.729	86.26	89.302	-0.0056229					438	138	6	0	0	0	0.24581	1	23516	23516		16.942	0	1	19506000	+		48018	22420	27515	27516	58779	58779					0.016752420743159746
TGLSAGVIGT	10	Unmodified	_TGLSAGVIGT_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.89300537109375	2	438.245275	874.475997	-0.14009	-6.1394E-05	0.82685	0.00036236	0.68676	0.00030097	438.2461810572042	22.848	1.3227	22.76	22.11	23.433	-0.087608					69	47	3	0	0	0	0.31143	1	3282	3282		17.113	0	1	144180			48019	8296	27516	27517	58780	58780					0.03373792143531773
TGLSHCPP	8	Unmodified	_TGLSHCPP_					0	0	0		nc|ENSG00000130055|Q9HCC8-3|GDPD2	nc|ENSG00000130055|Q9HCC8-3|GDPD2	nc|ENSG00000130055|Q9HCC8-3|GDPD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.20062255859375	2	406.191988	810.369423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.304	1	14.238	13.738	14.738	-0.066068								0	0	0	0.37078	1	684	684		5.2307	0	1				48020	12697	27517	27518	58781	58781					-0.04334661622647218
TGLVLVQF	8	Unmodified	_TGLVLVQF_					0	0	0		ENST00000473875.5_1_1:244724068-244773670:+|nuORF;nc|ENSG00000179397|Q5SY80-3|CATSPERE;nc|ENSG00000179397|Q5SY80-2|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE	ENST00000473875.5_1_1:244724068-244773670:+|nuORF	ENST00000473875.5_1_1:244724068-244773670:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.25189208984375	2	438.763104	875.511654	0.079075	3.4695E-05	-3.8441	-0.0016867	-3.765	-0.001652	438.76152868283197	80.664	0.35571	80.637	80.376	80.731	-0.026825					15	12	2	0	0	0	0.34131	1	20926	20926		12.532	10.229	1	141980			48021	7120	27518	27519	58782	58782					0.06891874391192232
TGLVLVQF	8	Unmodified	_TGLVLVQF_					0	0	0		ENST00000473875.5_1_1:244724068-244773670:+|nuORF;nc|ENSG00000179397|Q5SY80-3|CATSPERE;nc|ENSG00000179397|Q5SY80-2|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE	ENST00000473875.5_1_1:244724068-244773670:+|nuORF	ENST00000473875.5_1_1:244724068-244773670:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	438.763104	875.511654	0.033966	1.4903E-05	-3.4701	-0.0015225	-3.4361	-0.0015076	438.7618582317695	80.506	0.12784	80.506	80.412	80.54	0	-0.065454	0.000166	NaN	12.532	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152890			48022	7120	27518	27519							0.06891874391192232
TGMEGIQMDE	10	Unmodified	_TGMEGIQMDE_					0	0	0		ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7271728515625	2	555.725732	1109.43691	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.766	1	87.763	87.263	88.263	-0.0028381								0	0	0	0.37807	1	23141	23141		2.9952	0.41776	1				48023	3117	27519	27520	58783	58783					-0.11343044264663149
TGNIPTWLT	9	Unmodified	_TGNIPTWLT_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.26904296875	2	501.766374	1001.5182	0.62572	0.00031397	-0.69526	-0.00034886	-0.069536	-3.4891E-05	501.76811586449156	83.636	0.61126	83.636	83.321	83.932	0					34	22	2	0	0	0	0.28674	1	21959	21959		10.824	2.2306	1	188810			48024	5089	27520	27521	58784	58784					0.01749767551905279
TGNKVVNWD	9	Unmodified	_TGNKVVNWD_					0	0	0		NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant;nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.L1448*|1|0.12|ENSG00000144426|chr2:203136636-203136636|T/-|frameshift_variant	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	NBEAL1|p.E2163Dfs*9|1|0.33|ENSG00000144426|chr2:203180493-203180494|GT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7584228515625	2	516.759081	1031.50361	0.022389	1.157E-05	0.36599	0.00018913	0.38838	0.0002007	516.7592528299281	25.39	0.62953	25.334	25.074	25.704	-0.055931					49	21	3	0	0	0	0.2869	1	4132	4132		10.8	0	1	440870			48025	4584	27521	27522	58785	58785					-0.010883045962373217
TGNVQLEYG	9	Unmodified	_TGNVQLEYG_					0	0	0			REV__ENSG00000132535|ENST00000399506|DLG4	REV__ENSG00000132535|ENST00000399506|DLG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7379455566406	2	490.737814	979.461075	0.1603	7.8666E-05	0.12447	6.1082E-05	0.28477	0.00013975	490.7378317849155	22.468	0.77361	22.468	22.222	22.996	0					77	26	4	0	0	0	0.25989	1	3192	3192		14.838	0.93222	1	328430	+		48026	15578	27522	27523	58786	58786					-0.029476997244614722
TGNVQLEYG	9	Unmodified	_TGNVQLEYG_					0	0	0			REV__ENSG00000132535|ENST00000399506|DLG4	REV__ENSG00000132535|ENST00000399506|DLG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.8033447265625	2	490.737814	979.461075	0.1603	7.8666E-05	0.12447	6.1082E-05	0.28477	0.00013975	490.7378317849155	22.468	0.77361	22.468	22.222	22.996	0					77	26	4	0	0	0	0.24688	1	3209	3209		14.838	1.7958	1	328430	+		48027	15578	27522	27523	58787	58787					-0.029476997244614722
TGPFDREHLLS	11	Unmodified	_TGPFDREHLLS_					0	0	0		ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.85302734375	2	636.322576	1270.6306	0.29553	0.00018805	-1.0075	-0.0006411	-0.71198	-0.00045305	636.3219696814298	70.007	0.51366	70.007	69.787	70.301	0					35	18	3	0	0	0	0.32798	1	17713	17713		11.495	0	1	201660			48028	4160	27523	27524	58788	58788					0.006109965580890275
TGPFFRYRTY	10	Unmodified	_TGPFFRYRTY_					0	0	0		nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;ENSG00000125505|ENST00000245615|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.5556640625	3	436.555895	1306.64586	-0.32535	-0.00014203	-1.3937	-0.00060843	-1.7191	-0.00075047	436.555657724596	14.641	0.94691	14.575	14.007	14.954	-0.066068					66	33	3	0	0	0	0.40085	1	823	823		3.3196	0.88486	1	135970			48029	3213	27524	27525	58789	58789					0.004799081459395893
TGPRIGEPL	9	Unmodified	_TGPRIGEPL_					0	0	0			REV__ENSG00000205076|ENST00000378626|LGALS7	REV__ENSG00000205076|ENST00000378626|LGALS7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2666015625	2	470.266542	938.51853	0.032019	1.5058E-05	-0.40774	-0.00019174	-0.37572	-0.00017669	470.26651107795317	29.465	0.68464	29.478	29.166	29.85	0.013475					44	23	3	0	0	0	0.23767	1	5318	5318		18.146	0.011366	1	234560	+		48030	18050	27525	27526	58790	58790					0.0468118727176261
TGPRKNQKLGH	11	Unmodified	_TGPRKNQKLGH_					0	0	0			REV__nc|ENSG00000149201|Q6ZN84-2|CCDC81	REV__nc|ENSG00000149201|Q6ZN84-2|CCDC81	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.890869140625	3	412.570427	1234.68945	-0.37693	-0.00015551	-0.038352	-1.5823E-05	-0.41529	-0.00017134	412.5703444291647	13.191	0.53892	13.191	13.058	13.597	0					35	18	3	0	0	0	0.33287	1	428	428		2.8433	0.4085	1	68651	+		48031	23027	27526	27527	58791	58791					0.08149517643073523
TGPTRFFLF	9	Unmodified	_TGPTRFFLF_					0	0	0		ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF	ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2925415039062	2	543.292559	1084.57057	0.54318	0.00029511	-0.88902	-0.000483	-0.34583	-0.00018789	543.2918931460567	72.027	0.65476	72.027	71.773	72.428	0					43	23	2	0	0	0	0.24636	1	18337	18337		16.149	3.6176	1	417460			48032	470	27527	27528	58792	58792					0.03166350685501129
TGPTRFFLF	9	Unmodified	_TGPTRFFLF_					0	0	0		ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF	ENSG00000013588|ENST00000014914|GPRC5A	ENSG00000013588|ENST00000014914|GPRC5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8047485351562	2	543.292559	1084.57057	0.67246	0.00036534	-0.63428	-0.0003446	0.038181	2.0743E-05	543.2918485201654	71.952	0.7299	72.008	71.757	72.486	0.056572					57	26	3	0	0	0	0.12563	1	18295	18295		47.749	7.7914	1	430800			48033	470	27527	27528	58793	58793					0.03166350685501129
TGQLPPPQP	9	Unmodified	_TGQLPPPQP_					0	0	0			REV__ENSG00000155816|ENST00000319653|FMN2	REV__ENSG00000155816|ENST00000319653|FMN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.23681640625	2	467.753267	933.491981	0.063736	2.9813E-05	-1.2499	-0.00058465	-1.1862	-0.00055483	467.75378169924124	33.812	0.74828	33.879	33.549	34.298	0.066704					49	26	3	0	0	0	0.20626	1	6638	6638		22.736	0.98964	1	332540	+		48034	16714	27528	27529	58794	58794					0.022574983804247495
TGRKRHLMVIL	11	Unmodified	_TGRKRHLMVIL_					0	0	0		ENST00000536708.6_1_17:46058929-46059097:+|nuORF	ENST00000536708.6_1_17:46058929-46059097:+|nuORF	ENST00000536708.6_1_17:46058929-46059097:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.939697265625	3	441.939575	1322.79689	0.092096	4.0701E-05	0.12398	5.479E-05	0.21607	9.549E-05	441.9397146623042	49.469	1.1725	49.501	48.852	50.025	0.032043					137	42	4	0	0	0	0.46554	1	11347	11347		2.6312	0	1	865110			48035	11684	27529	27530	58795	58795					0.14840771252966078
TGSFFPKGEDF	11	Unmodified	_TGSFFPKGEDF_					0	0	0		nc|ENSG00000022267|Q13642|FHL1;nc|ENSG00000022267|Q13642-3|FHL1;nc|ENSG00000022267|Q13642-1|FHL1;ENSG00000022267|ENST00000370683|FHL1;nc|ENSG00000022267|Q13642-4|FHL1	nc|ENSG00000022267|Q13642|FHL1	nc|ENSG00000022267|Q13642|FHL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2276611328125	3	411.192511	1230.5557	0.035486	1.4592E-05	0.062701	2.5782E-05	0.098187	4.0374E-05	411.19237344310693	24.342	0.45821	24.303	24.02	24.478	-0.038927					20	15	2	0	0	0	0.3325	1	3669	3669		4.1166	2.2103	1	33162			48036	12566	27530	27531	58796	58796					-0.050351859731335935
TGSFFPKGEDF	11	Unmodified	_TGSFFPKGEDF_					0	0	0		nc|ENSG00000022267|Q13642|FHL1;nc|ENSG00000022267|Q13642-3|FHL1;nc|ENSG00000022267|Q13642-1|FHL1;ENSG00000022267|ENST00000370683|FHL1;nc|ENSG00000022267|Q13642-4|FHL1	nc|ENSG00000022267|Q13642|FHL1	nc|ENSG00000022267|Q13642|FHL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	411.192511	1230.5557	-0.14052	-5.778E-05	0.90118	0.00037056	0.76066	0.00031278	411.19290427681074	24.156	0.39738	24.156	23.998	24.395	0	-0.094372	-6.3739E-05	NaN	4.1166	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43840			48037	12566	27530	27531							-0.050351859731335935
TGSFFPKGEDF	11	Unmodified	_TGSFFPKGEDF_					0	0	0		nc|ENSG00000022267|Q13642|FHL1;nc|ENSG00000022267|Q13642-3|FHL1;nc|ENSG00000022267|Q13642-1|FHL1;ENSG00000022267|ENST00000370683|FHL1;nc|ENSG00000022267|Q13642-4|FHL1	nc|ENSG00000022267|Q13642|FHL1	nc|ENSG00000022267|Q13642|FHL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.192511	1230.5557	0.17597	7.2356E-05	1.6475	0.00067743	1.8235	0.00074979	411.1930734099647	24.365	0.37955	24.292	24.118	24.498	-0.072559	0.041888	0.00085689	NaN	4.1166	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27832			48038	12566	27530	27531							-0.050351859731335935
TGSLKKDKSKT	11	Unmodified	_TGSLKKDKSKT_					0	0	0			REV__ENST00000530791.5_1_11:65687869-65688903:+|nuORF	REV__ENST00000530791.5_1_11:65687869-65688903:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.318603515625	2	596.848427	1191.6823	0.44711	0.00026686	-1.769	-0.0010558	-1.3218	-0.00078894	597.3478582131718	91.796	0.39946	91.796	91.541	91.94	0					40	26	2	0	0	0	0.33282	1	24428	24428		2.4985	2.0978	1	115390	+		48039	17896	27531	27532	58797	58797					0.09412740251968899
TGSLKKDKSKT	11	Unmodified	_TGSLKKDKSKT_					0	0	0			REV__ENST00000530791.5_1_11:65687869-65688903:+|nuORF	REV__ENST00000530791.5_1_11:65687869-65688903:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.318603515625	2	596.848427	1191.6823	0.4246	0.00025342	-0.81017	-0.00048355	-0.38556	-0.00023012	596.8482041670618	92.081	0.64026	92.081	91.898	92.538	0					66	45	2	0	0	0	0.33282	1	24428	24428		2.4985	1.0166	1	86384	+		48040	17896	27531	27532	58798	58798					0.09412740251968899
TGSQNKRRKP	10	Unmodified	_TGSQNKRRKP_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.8135375976562	2	586.336353	1170.65815	0.48353	0.00028351	-0.36613	-0.00021468	0.1174	6.8834E-05	586.3360980668774	88.482	0.31979	88.482	88.331	88.651	0					22	17	2	0	0	0	0.32072	1	23415	23415		2.9952	0.93549	1	41488	+		48041	15358	27532	27533	58799	58799					0.07964944608988844
TGSRGLTACTV	11	Unmodified	_TGSRGLTACTV_					0	0	0		ENST00000445215.5_1_22:42979956-42980232:-|nuORF	ENST00000445215.5_1_22:42979956-42980232:-|nuORF	ENST00000445215.5_1_22:42979956-42980232:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.8110961914062	2	533.271498	1064.52844	0.97081	0.00051771	-3.5915	-0.0019152	-2.6207	-0.0013975	533.7704901740252	50.49	0.36336	50.535	50.403	50.766	0.044891					13	12	2	0	0	0	0.29118	1	11673	11673		27.629	8.3718	1	97168			48042	10581	27533	27534	58800	58800					-0.0012399278518842038
TGSRGLTACTV	11	Unmodified	_TGSRGLTACTV_					0	0	0		ENST00000445215.5_1_22:42979956-42980232:-|nuORF	ENST00000445215.5_1_22:42979956-42980232:-|nuORF	ENST00000445215.5_1_22:42979956-42980232:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	533.271498	1064.52844	0.92679	0.00049423	-2.5668	-0.0013688	-1.64	-0.00087456	533.2703229735577	50.606	0.22124	50.606	50.433	50.654	0	0.035595	0.00038722	NaN	27.629	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89064			48043	10581	27533	27534							-0.0012399278518842038
TGTDHFVII	9	Unmodified	_TGTDHFVII_					0	0	0		FAM76A|p.P210T|1|0.25|ENSG00000009780|chr1:27755223-27755223|C/A|missense_variant	FAM76A|p.P210T|1|0.25|ENSG00000009780|chr1:27755223-27755223|C/A|missense_variant	FAM76A|p.P210T|1|0.25|ENSG00000009780|chr1:27755223-27755223|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2826232910156	2	501.766374	1001.5182	0.74856	0.0003756	0.33563	0.00016841	1.0842	0.00054401	501.76658294314586	50.536	0.68189	50.536	50.267	50.949	0					35	24	2	0	0	0	0.2451	1	11796	11796		15.847	15.847	1	311090			48044	12341	27534	27535	58801	58801					0.01749767551905279
TGTIIFQV	8	Unmodified	_TGTIIFQV_					0	0	0			REV__nc|ENSG00000100462|O14744-4|PRMT5	REV__nc|ENSG00000100462|O14744-4|PRMT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.27874755859375	2	439.752736	877.490919	-0.23559	-0.0001036	0.29743	0.0001308	0.061845	2.7197E-05	439.7526881122502	61.686	0.50151	61.678	61.477	61.979	-0.0085564					22	17	2	0	0	0	0.34039	1	15187	15187		15.847	0	1	109710	+		48045	14203	27535	27536	58802	58802					0.04727284011528354
TGVAPFRAAI	10	Unmodified	_TGVAPFRAAI_					0	0	0		nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7894592285156	2	501.790184	1001.56581	0.37279	0.00018706	-0.40078	-0.00020111	-0.027993	-1.4047E-05	501.7898883675371	55.475	0.85103	55.475	55.198	56.049	0					88	30	4	0	0	0	0.25219	1	13258	13258		26.268	0	1	2495600			48046	7756	27536	27537	58803	58803					0.06509466542752307
TGVAPFRAAI	10	Unmodified	_TGVAPFRAAI_					0	0	0		nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.79022216796875	2	501.790184	1001.56581	0.56744	0.00028473	-0.60851	-0.00030534	-0.041068	-2.0608E-05	501.78977662636674	55.399	0.88335	55.47	55.164	56.048	0.070885					93	32	4	0	0	0	0.18562	1	13286	13286		34.402	0	1	3069700			48047	7756	27536	27537	58804	58804					0.06509466542752307
TGVESIAANDE	11	Unmodified	_TGVESIAANDE_					0	0	0			REV__ENSG00000204217|ENST00000374580|BMPR2	REV__ENSG00000204217|ENST00000374580|BMPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.2548217773438	2	553.254025	1104.4935	0.23805	0.0001317	0.2481	0.00013726	0.48616	0.00026897	553.2542539491732	31.671	0.35044	31.671	31.45	31.8	0					22	12	2	0	0	0	0.47649	1	5946	5946		1.1933	0	1	527270	+		48048	18927	27537	27538	58805	58805					-0.05456957112141936
TGVKLDPIN	9	Unmodified	_TGVKLDPIN_					0	0	0			REV__ENSG00000155097|ENST00000518738|ATP6V1C1	REV__ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.774169921875	2	478.7742	955.533846	-0.076751	-3.6746E-05	1.0495	0.00050248	0.97277	0.00046574	478.77410369390975	12.902	0.89151	12.803	12.549	13.441	-0.099291					83	30	4	0	0	0	0.27726	1	237	237		12.241	0.74595	1	121400	+		48049	16691	27538	27539	58806	58806					0.0543005406894963
TGVLPERQKLL	11	Unmodified	_TGVLPERQKLL_					0	0	0		ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.5907287597656	3	418.590717	1252.75032	-0.14787	-6.1896E-05	0.46426	0.00019433	0.31639	0.00013244	418.59086766447086	24.069	1.3436	24.069	23.419	24.762	0					111	45	3	0	0	0	0.39802	1	3625	3625		6.2344	0	1	329100			48050	5835	27539	27540	58807	58807					0.13405609902679316
TGVLPERQKLL	11	Unmodified	_TGVLPERQKLL_					0	0	0		ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	418.590717	1252.75032	0.12143	5.083E-05	0.42082	0.00017615	0.54225	0.00022698	418.5907827183477	24.273	1.1965	24.201	23.448	24.645	-0.072559	0.026713	1.0462E-05	NaN	6.2344	108	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328620			48051	5835	27539	27540							0.13405609902679316
TGVLPERQKLL	11	Unmodified	_TGVLPERQKLL_					0	0	0		ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	418.590717	1252.75032	0.050899	2.1306E-05	0.34955	0.00014632	0.40045	0.00016762	418.5908200967258	24.291	1.1659	24.252	23.592	24.758	-0.038927	0.077909	-7.903E-05	NaN	6.2344	118	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	396860			48052	5835	27539	27540							0.13405609902679316
TGVPKKRKKMH	11	Unmodified	_TGVPKKRKKMH_					0	0	0			REV__chr9:87773644-87774140|382|12.9|0.18|6.19|+|1|CTSL3P,CTSL3P|1	REV__chr9:87773644-87774140|382|12.9|0.18|6.19|+|1|CTSL3P,CTSL3P|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.267822265625	3	437.267691	1308.78124	0.17805	7.7857E-05	0.39299	0.00017184	0.57104	0.0002497	437.26784198715296	45.162	1.2523	45.162	44.552	45.805	0					182	45	5	0	0	0	0.46842	1	10149	10149		2.2527	0	1	4340400	+		48053	13223	27540	27541	58808	58808					0.13920484735899663
TGVPKKRKKMH	11	Unmodified	_TGVPKKRKKMH_					0	0	0			REV__chr9:87773644-87774140|382|12.9|0.18|6.19|+|1|CTSL3P,CTSL3P|1	REV__chr9:87773644-87774140|382|12.9|0.18|6.19|+|1|CTSL3P,CTSL3P|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2677917480469	3	437.267691	1308.78124	-0.077082	-3.3705E-05	0.23466	0.00010261	0.15758	6.8904E-05	437.26767811067197	46.2	1.688	46.2	45.64	47.328	0					171	60	4	0	0	0	0.45422	1	10352	10352		4.1166	0.52395	1	7250800	+		48054	13223	27540	27541	58809	58809					0.13920484735899663
TGVPKKRKKMH	11	Unmodified	_TGVPKKRKKMH_					0	0	0			REV__chr9:87773644-87774140|382|12.9|0.18|6.19|+|1|CTSL3P,CTSL3P|1	REV__chr9:87773644-87774140|382|12.9|0.18|6.19|+|1|CTSL3P,CTSL3P|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.26788330078125	3	437.267691	1308.78124	-0.12309	-5.3824E-05	0.34774	0.00015206	0.22465	9.8233E-05	437.26773201521036	45.995	1.6848	46.055	45.565	47.25	0.059834					200	61	5	0	0	0	0.45422	2	10297	10297;10388		4.1166	0.52957	1	7201400	+		48055	13223	27540	27541	58810;58811	58810					0.13920484735899663
TGVPKKRKKMH	11	Unmodified	_TGVPKKRKKMH_					0	0	0			REV__chr9:87773644-87774140|382|12.9|0.18|6.19|+|1|CTSL3P,CTSL3P|1	REV__chr9:87773644-87774140|382|12.9|0.18|6.19|+|1|CTSL3P,CTSL3P|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2680358886719	3	437.267691	1308.78124	0.35583	0.00015559	0.41293	0.00018056	0.76875	0.00033615	437.26780413488876	47.795	1.6112	47.843	47.187	48.799	0.04752					187	59	4	0	0	0	0.44966	1	10958	10958		4.7159	2.8095	1	6899900	+		48056	13223	27540	27541	58812	58812					0.13920484735899663
TGVPKKRKKMH	11	Unmodified	_TGVPKKRKKMH_					0	0	0			REV__chr9:87773644-87774140|382|12.9|0.18|6.19|+|1|CTSL3P,CTSL3P|1	REV__chr9:87773644-87774140|382|12.9|0.18|6.19|+|1|CTSL3P,CTSL3P|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.26788330078125	3	437.267691	1308.78124	0.2896	0.00012663	0.52204	0.00022827	0.81164	0.0003549	437.2678387324393	47.779	1.5644	47.823	47.157	48.721	0.04332					167	58	4	0	0	0	0.45422	2	10882	10882;11127		4.1166	0.52395	1	7942200	+		48057	13223	27540	27541	58813;58814	58813					0.13920484735899663
TGVPVSIAVGG	11	Unmodified	_TGVPVSIAVGG_					0	0	0		ARID2|p.Q1044Pfs*6|1|0.19|ENSG00000189079|chr12:45851254-45851273|AGTCGAATGCAGGAGTTGGT/-|frameshift_variant;ARID2|p.G1274Efs*21|1|0.55|ENSG00000189079|chr12:45851943-45851943|G/-|frameshift_variant;ARID2|p.S1466Rfs*2|1|0.05|ENSG00000189079|chr12:45852521-45852521|T/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.Q1044Pfs*6|1|0.19|ENSG00000189079|chr12:45851254-45851273|AGTCGAATGCAGGAGTTGGT/-|frameshift_variant	ARID2|p.Q1044Pfs*6|1|0.19|ENSG00000189079|chr12:45851254-45851273|AGTCGAATGCAGGAGTTGGT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7742614746094	2	478.7742	955.533846	-0.17075	-8.1751E-05	0.46562	0.00022293	0.29487	0.00014117	478.77410180133387	12.8	1.0982	12.8	12.669	13.767	0					70	38	3	0	0	0	0.39802	1	227	227		11.495	0	1	135970			48058	55	27541	27542	58815	58815					0.05430054068960999
TGVPVSIAVGG	11	Unmodified	_TGVPVSIAVGG_					0	0	0		ARID2|p.Q1044Pfs*6|1|0.19|ENSG00000189079|chr12:45851254-45851273|AGTCGAATGCAGGAGTTGGT/-|frameshift_variant;ARID2|p.G1274Efs*21|1|0.55|ENSG00000189079|chr12:45851943-45851943|G/-|frameshift_variant;ARID2|p.S1466Rfs*2|1|0.05|ENSG00000189079|chr12:45852521-45852521|T/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.Q1044Pfs*6|1|0.19|ENSG00000189079|chr12:45851254-45851273|AGTCGAATGCAGGAGTTGGT/-|frameshift_variant	ARID2|p.Q1044Pfs*6|1|0.19|ENSG00000189079|chr12:45851254-45851273|AGTCGAATGCAGGAGTTGGT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7740783691406	2	478.7742	955.533846	-0.1578	-7.5551E-05	0.61059	0.00029233	0.45279	0.00021678	478.77411213715067	12.852	0.96891	12.785	12.58	13.549	-0.067496					71	33	3	0	0	0	0.39802	1	251	251		11.495	0	1	120570			48059	55	27541	27542	58816	58816					0.05430054068960999
TGWPHPPGCGG	11	Unmodified	_TGWPHPPGCGG_					0	0	0		ENST00000296545.11_1_4:142557787-142557946:+|nuORF;ENST00000320650.8_1_4:142557787-142577401:+|nuORF	ENST00000296545.11_1_4:142557787-142557946:+|nuORF	ENST00000296545.11_1_4:142557787-142557946:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2334594726562	2	533.232176	1064.4498	0.36891	0.00019671	1.2332	0.00065756	1.6021	0.00085427	533.2327850694448	21.979	0.88248	21.929	21.492	22.375	-0.049377					54	31	2	0	0	0	0.46277	1	2989	2989		2.9952	0.93549	1	122440			48060	9185	27542	27543	58817	58817					-0.07984800299595918
TGWVSWLV	8	Unmodified	_TGWVSWLV_					0	0	0		ENST00000412946.6_1_13:45918924-45926043:+|nuORF	ENST00000412946.6_1_13:45918924-45926043:+|nuORF	ENST00000412946.6_1_13:45918924-45926043:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2528381347656	2	474.252903	946.491253	0.49202	0.00023334	-0.53422	-0.00025336	-0.042201	-2.0014E-05	474.25275452257637	78.387	2.11	78.387	77.632	79.742	0					138	82	3	0	0	0	0.4419	1	20341	20341		8.5933	0	1	804700			48061	10282	27543	27544	58818	58818					0.015867037313682886
TGYLNTVTV	9	Unmodified	_TGYLNTVTV_					0	0	0		ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENSG00000204628|ENST00000512805|RACK1	ENST00000514183.5_1_5:180665952-180670713:-|nuORF	ENST00000514183.5_1_5:180665952-180670713:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2583923339844	2	484.258382	966.502212	0.5905	0.00028595	-0.47422	-0.00022965	0.11627	5.6306E-05	484.25834741993805	56.38	2.5756	56.38	56.049	58.624	0					219	93	4	0	0	0	5.5754E-11	6	13654	13464;13508;13549;13601;13654;13708		185.05	81.302	1	58487000			48062	8245	27544	27545	58819;58820;58821;58822;58823;58824	58823					0.017620613150029385
TGYLNTVTV	9	Unmodified	_TGYLNTVTV_					0	0	0		ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENSG00000204628|ENST00000512805|RACK1	ENST00000514183.5_1_5:180665952-180670713:-|nuORF	ENST00000514183.5_1_5:180665952-180670713:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.25885009765625	2	484.258382	966.502212	0.6986	0.0003383	-0.54792	-0.00026533	0.15068	7.297E-05	484.25831085888353	56.293	3.4786	56.372	56.055	59.534	0.078674					278	126	4	0	0	0	2.32E-07	6	13534	13438;13486;13534;13579;13631;13682		171.09	78.595	1	63477000			48063	8245	27544	27545	58825;58826;58827;58828;58829;58830	58827					0.017620613150029385
TGYLNTVTV	9	Unmodified	_TGYLNTVTV_					0	0	0		ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENSG00000204628|ENST00000512805|RACK1	ENST00000514183.5_1_5:180665952-180670713:-|nuORF	ENST00000514183.5_1_5:180665952-180670713:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.2586669921875	2	484.258382	966.502212	0.92777	0.00044928	-0.57803	-0.00027992	0.34974	0.00016936	484.25824336393765	56.417	2.3606	56.398	56.021	58.381	-0.019081					233	86	4	0	0	0	1.6536E-07	7	13519	13474;13519;13569;13620;13673;13728;13846		173.69	81.033	1	66279000			48064	8245	27544	27545	58831;58832;58833;58834;58835;58836;58837	58832					0.017620613150029385
THEDPVIAVF	10	Unmodified	_THEDPVIAVF_					0	0	0		ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8206787109375	2	564.290214	1126.56587	0.24987	0.000141	0.83589	0.00047168	1.0858	0.00061269	564.2901566820326	80.464	2.3327	80.464	79.612	81.944	0					212	97	3	0	0	0	0.31165	1	20774	20774		6.7232	0	1	589090			48065	1811	27545	27546	58838	58838					0.007654217520894235
THIAFVCLF	9	Unmodified	_THIAFVCLF_					0	0	0		ENST00000478241.6_2_12:56229026-56229119:+|nuORF	ENST00000478241.6_2_12:56229026-56229119:+|nuORF	ENST00000478241.6_2_12:56229026-56229119:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2474975585938	2	525.775688	1049.53682	0.34864	0.00018331	2.3321	0.0012262	2.6808	0.0014095	525.7774455940429	31.515	1.0897	31.515	30.81	31.9	0					51	38	2	0	0	0	0.24739	1	6013	6013		4.756	2.1785	1	320190			48066	10971	27546	27547	58839	58839					0.014036059221098185
THIFVDSI	8	Unmodified	_THIFVDSI_					0	0	0			REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7774658203125	2	466.247818	930.481082	-0.076967	-3.5886E-05	-0.71813	-0.00033483	-0.7951	-0.00037071	466.2477767231025	73.285	0.6686	73.285	73.02	73.689	0					64	23	4	0	0	0	0.34092	1	18651	18651		8.5933	0	1	342920	+		48067	23062	27547	27548	58840	58840					0.013060960061352489
THIFVDSI	8	Unmodified	_THIFVDSI_					0	0	0			REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7774963378906	2	466.247818	930.481082	-0.083469	-3.8917E-05	-0.5254	-0.00024497	-0.60887	-0.00028388	466.24789462485865	73.255	0.74461	73.308	72.98	73.725	0.053833					68	26	4	0	0	0	0.34092	1	18630	18630		8.5933	0	1	348270	+		48068	23062	27547	27548	58841	58841					0.013060960061352489
THIFVDSI	8	Unmodified	_THIFVDSI_					0	0	0			REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.777587890625	2	466.247818	930.481082	0.23626	0.00011016	-0.23632	-0.00011018	-5.9738E-05	-2.7853E-08	466.2477141680262	73.356	0.73453	73.327	73.009	73.744	-0.029305					61	26	3	0	0	0	0.34092	1	18659	18659		8.5933	0	1	455190	+		48069	23062	27547	27548	58842	58842					0.013060960061352489
THIHPYFGPPL	11	Unmodified	_THIHPYFGPPL_					0	0	0			REV__nc|ENSG00000146576|Q96N11-2|INTS15	REV__nc|ENSG00000146576|Q96N11-2|INTS15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.52490234375	3	426.892507	1277.65569	-0.29001	-0.0001238	-3.0312	-0.001294	-3.3212	-0.0014178	427.22573570428125	22.744	0.16654	22.744	22.708	22.875	0					6	5	2	0	0	0	0.33347	1	3246	3246		0.45452	0.37117	1	10190	+		48070	16353	27548	27549	58843	58843					0.027970961513574366
THIKKHATL	9	Unmodified	_THIKKHATL_					0	0	0			REV__nc|ENSG00000196247|Q9UII5|ZNF107	REV__nc|ENSG00000196247|Q9UII5|ZNF107	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2476196289062	2	524.816733	1047.61891	0.52835	0.00027729	0.0078388	4.1139E-06	0.53619	0.0002814	524.8166265853458	31.905	0.29121	31.905	31.719	32.01	0					15	9	2	0	0	0	0.25202	1	5966	5966		6.7232	2.3939	1	403710	+		48071	18635	27549	27550	58844	58844					0.09700844325402613
THISIVHRK	9	Unmodified	_THISIVHRK_					0	0	0			REV__nc|ENSG00000147180|Q9Y462|ZNF711	REV__nc|ENSG00000147180|Q9Y462|ZNF711	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.787353515625	2	545.827632	1089.64071	0.32403	0.00017687	-0.47892	-0.00026141	-0.15489	-8.4544E-05	545.8274850615077	24.755	0.29145	24.724	24.571	24.862	-0.031408					15	9	2	0	0	0	0.25066	1	3864	3864		11.64	3.4848	1	46402	+		48072	16377	27550	27551	58845	58845					0.09947649073978937
THITTTTTVTP	11	Unmodified	_THITTTTTVTP_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3040771484375	2	586.81151	1171.60847	0.19089	0.00011202	1.6441	0.00096479	1.835	0.0010768	586.812574717188	18.509	0.31375	18.509	18.332	18.646	0					19	10	2	0	0	0	0.33324	1	1938	1938		1.1933	0	1	50807			48073	12904	27551	27552	58846	58846					0.02952772089656719
THIYLYRYIYI	11	Unmodified	_THIYLYRYIYI_					0	0	0			REV__ENST00000527636.5_3_11:12958765-12958912:+|nuORF	REV__ENST00000527636.5_3_11:12958765-12958912:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7927551269531	3	506.609889	1516.80784	-0.1106	-5.6029E-05	-0.38087	-0.00019295	-0.49146	-0.00024898	506.60967937682494	25.3	0.76004	25.269	24.922	25.682	-0.031408					94	26	5	0	0	0	0.33351	1	3937	3937		0.094841	0	1	850240	+		48074	21979	27552	27553	58847	58847					0.07010452108238496
THKEHRKK	8	Unmodified	_THKEHRKK_					0	0	0			REV__nc|ENSG00000175455|Q49A88-5|CCDC14	REV__nc|ENSG00000175455|Q49A88-5|CCDC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3109130859375	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.04	1	113.03	112.53	113.53	-0.017303								0	0	0	0.37724	1	29394	29394		2.3027	0	1		+		48075	17892	27553	27554	58848	58848					0.07586191897121353
THKLKKTR	8	Unmodified	_THKLKKTR_					0	0	0			REV__ENSG00000212126|ENST00000506868|TAS2R50	REV__ENSG00000212126|ENST00000506868|TAS2R50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.255615234375	2	506.324725	1010.6349	0.069405	3.5141E-05	-0.51943	-0.000263	-0.45003	-0.00022786	506.32437078056523	15.537	0.44564	15.537	15.289	15.734	0					18	14	2	0	0	0	0.34437	1	996	996		0.69038	0	1	27317	+		48076	19028	27554	27555	58849	58849					0.1300055056231031
THKLKKTR	8	Unmodified	_THKLKKTR_					0	0	0			REV__ENSG00000212126|ENST00000506868|TAS2R50	REV__ENSG00000212126|ENST00000506868|TAS2R50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2557067871094	2	506.324725	1010.6349	0.059213	2.9981E-05	-0.27999	-0.00014177	-0.22078	-0.00011179	506.32455496146173	15.514	0.36817	15.45	15.36	15.728	-0.064414					16	11	2	0	0	0	0.34437	1	1036	1036		0.69038	0	1	32870	+		48077	19028	27554	27555	58850	58850					0.1300055056231031
THKTCRIVY	9	Unmodified	_THKTCRIVY_					0	0	0			REV__ENSG00000181789|ENST00000314797|COPG1	REV__ENSG00000181789|ENST00000314797|COPG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.76611328125	2	560.800226	1119.5859	0.11485	6.441E-05	-0.16683	-9.356E-05	-0.051979	-2.915E-05	560.8003423068728	31.451	0.24711	31.493	31.268	31.515	0.042366					14	8	2	0	0	0	0.2451	1	5883	5883		15.847	1.0089	1	630850	+		48078	18165	27555	27556	58851	58851					0.03088894211077786
THLKSIWLC	9	Unmodified	_THLKSIWLC_					0	0	0		ENST00000590519.2_1_19:33149896-33166702:-|nuORF	ENST00000590519.2_1_19:33149896-33166702:-|nuORF	ENST00000590519.2_1_19:33149896-33166702:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.272216796875	2	550.799694	1099.58484	0.45735	0.00025191	2.6354	0.0014516	3.0927	0.0017035	550.8012529232748	21.303	0.37864	21.303	21.138	21.517	0					21	12	2	0	0	0	0.25706	1	2813	2813		6.7232	0	1	36839			48079	12171	27556	27557	58852	58852					0.03902679842167345
THLQLRILE	9	Unmodified	_THLQLRILE_					0	0	0		ENST00000378244.6_1_12:100636296-100649830:-|nuORF	ENST00000378244.6_1_12:100636296-100649830:-|nuORF	ENST00000378244.6_1_12:100636296-100649830:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.758544921875	2	561.835123	1121.65569	0.061411	3.4503E-05	-0.56259	-0.00031608	-0.50118	-0.00028158	561.8351053736415	31.407	0.21812	31.407	31.258	31.476	0					10	7	2	0	0	0	0.24913	1	5883	5883		4.3292	1.0479	1	60793			48080	9954	27557	27558	58853	58853					0.09973096151315985
THLYQRQYF	9	Unmodified	_THLYQRQYF_					0	0	0		ENSG00000162302|ENST00000334205|RPS6KA4;nc|ENSG00000162302|O75676-2|RPS6KA4	ENSG00000162302|ENST00000334205|RPS6KA4	ENSG00000162302|ENST00000334205|RPS6KA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.7746276855469	3	419.212128	1254.61456	0.17424	7.3044E-05	2.0162	0.00084522	2.1905	0.00091827	419.21287282473656	37.254	0.67875	37.341	37.09	37.768	0.08741					36	24	2	0	0	0	0.25871	1	7642	7642		6.1918	5.3275	1	205920			48081	5558	27558	27559	58854	58854					-0.002566648881384026
THMRPYRK	8	Unmodified	_THMRPYRK_					0	0	0		ENSG00000133028|ENST00000255390|SCO1	ENSG00000133028|ENST00000255390|SCO1	ENSG00000133028|ENST00000255390|SCO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7921752929688	2	544.792735	1087.57092	0.066499	3.6228E-05	0.54276	0.00029569	0.60925	0.00033192	545.2952414935061	114.8	0.2462	114.8	114.71	114.95	0					42	30	2	0	0	0	0.46022	1	29752	29752		2.3027	0	1	27395			48082	3687	27559	27560	58855	58855					0.030634471337180003
THMRPYRK	8	Unmodified	_THMRPYRK_					0	0	0		ENSG00000133028|ENST00000255390|SCO1	ENSG00000133028|ENST00000255390|SCO1	ENSG00000133028|ENST00000255390|SCO1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.79248046875	2	544.792735	1087.57092	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.06	1	113.08	112.58	113.58	0.014824								0	0	0	0.37724	1	29419	29419		2.3027	0	1				48083	3687	27559	27560	58856	58856					0.030634471337180003
THMRPYRK	8	Unmodified	_THMRPYRK_					0	0	0		ENSG00000133028|ENST00000255390|SCO1	ENSG00000133028|ENST00000255390|SCO1	ENSG00000133028|ENST00000255390|SCO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7914428710938	2	544.792735	1087.57092	0.55376	0.00030168	0.19616	0.00010686	0.74992	0.00040855	545.294983488736	112.72	0.28927	112.74	112.51	112.8	0.0131					51	33	2	0	0	0	0.34408	1	29343	29343		2.3027	0	1	60720			48084	3687	27559	27560	58857	58857					0.030634471337180003
THPHLELNP	9	Unmodified	_THPHLELNP_					0	0	0		nc|ENSG00000106034|A4D0V7-2|CPED1;ENSG00000106034|ENST00000310396|CPED1	nc|ENSG00000106034|A4D0V7-2|CPED1	nc|ENSG00000106034|A4D0V7-2|CPED1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7579345703125	2	529.274898	1056.53524	0.60894	0.0003223	-0.95495	-0.00050543	-0.34601	-0.00018313	529.2743831488176	21.238	0.36821	21.238	20.942	21.31	0					18	12	2	0	0	0	0.25622	1	2734	2734		7.2892	0	1	35244			48085	2050	27560	27561	58858	58858					0.009236881576953238
THRQAPSL	8	Unmodified	_THRQAPSL_					0	0	0			REV__ENST00000552564.5_1_12:54789939-54790050:-|nuORF	REV__ENST00000552564.5_1_12:54789939-54790050:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2556457519531	2	455.248683	908.482814	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.003	1	49.048	48.548	49.548	0.044891								0	0	0	0.32762	1	11256	11256		24.674	2.9272	1		+		48086	22219	27561	27562	58859	58859					0.02491149814761684
THSRVHRR	8	Unmodified	_THSRVHRR_					0	0	0			REV__ENSG00000196110|ENST00000591998|ZNF699	REV__ENSG00000196110|ENST00000591998|ZNF699	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7567138671875	2	524.797198	1047.57984	0.79632	0.0004179	2.5367	0.0013313	3.3331	0.0017492	524.798616507877	32.166	0.30882	32.208	32.022	32.331	0.042366					15	10	2	0	0	0	0.34218	1	6125	6125		9.3474	0	1	92554	+		48087	18619	27562	27563	58860	58860					0.05795556814427982
THSVATAAQ	9	Unmodified	_THSVATAAQ_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7510986328125	2	443.224874	884.435195	0.042196	1.8702E-05	0.35974	0.00015944	0.40193	0.00017815	443.2249138415179	19.098	0.7948	19.041	18.655	19.45	-0.057419					36	27	2	0	0	0	0.26031	1	2253	2253		3.5965	0.70727	1	44409			48088	7892	27563	27564	58861	58861					-0.01164549176098717
THTGEKPCKCD	11	Unmodified	_THTGEKPCKCD_					0	0	0		nc|ENSG00000154957|P17022-2|ZNF18;ENSG00000154957|ENST00000580306|ZNF18	nc|ENSG00000154957|P17022-2|ZNF18	nc|ENSG00000154957|P17022-2|ZNF18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2237854003906	3	406.846241	1217.51689	-0.37544	-0.00015275	0.068892	2.8028E-05	-0.30655	-0.00012472	407.1804561175173	14.014	0.17632	13.948	13.831	14.007	-0.066068					7	5	2	0	0	0	0.33149	1	574	574		2.4348	0.52841	1	19635			48089	5152	27564	27565	58862	58862					-0.08316557870807628
THWLFGHAL	9	Unmodified	_THWLFGHAL_					0	0	0		nc|ENSG00000142973|P13584|CYP4B1;ENSG00000142973|ENST00000371923|CYP4B1	nc|ENSG00000142973|P13584|CYP4B1	nc|ENSG00000142973|P13584|CYP4B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2821655273438	2	541.282526	1080.5505	0.5447	0.00029483	-2.4446	-0.0013232	-1.8999	-0.0010284	541.2819025998219	23.349	0.52944	23.305	23.084	23.614	-0.044867					58	18	5	0	0	0	0.34536	1	3419	3419		2.0598	0	1	239170			48090	4474	27565	27566	58863	58863					0.013445997455619363
TIAALQANKF	10	Unmodified	_TIAALQANKF_					0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29;nc|ENSG00000137962|Q52LW3-2|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8632202148438	2	538.808574	1075.60259	0.54255	0.00029233	-3.07	-0.0016542	-2.5275	-0.0013618	538.8066418248955	79.307	0.13651	79.369	79.257	79.394	0.061417					8	6	2	0	0	0	0.318	1	20525	20525		7.2892	0.56607	1	43504			48091	4099	27566	27567	58864	58864					0.06781718368642942
TIAEIKNLF	9	Unmodified	_TIAEIKNLF_					0	0	0		ENSG00000099797|ENST00000215567|TECR;ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000601652.5_1_19:14640444-14674077:+|nuORF;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF	ENSG00000099797|ENST00000215567|TECR	ENSG00000099797|ENST00000215567|TECR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.8056030273438	2	524.8055	1047.59645	0.62336	0.00032714	-0.6444	-0.00033818	-0.021037	-1.1041E-05	524.8050523769919	63.481	1.8493	63.481	63.168	65.017	0					146	67	3	0	0	0	9.2305E-05	5	15729	15684;15729;15778;15828;15874		142.08	53.126	1	1813000			48092	1494	27567	27568	58865;58866;58867;58868;58869	58866					0.07455200137110296
TIAEIKNLF	9	Unmodified	_TIAEIKNLF_					0	0	0		ENSG00000099797|ENST00000215567|TECR;ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000601652.5_1_19:14640444-14674077:+|nuORF;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF	ENSG00000099797|ENST00000215567|TECR	ENSG00000099797|ENST00000215567|TECR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8056030273438	2	524.8055	1047.59645	0.58686	0.00030799	-0.51949	-0.00027263	0.067365	3.5354E-05	524.8050900710846	63.364	1.7605	63.46	63.122	64.882	0.095722					146	63	4	0	0	0	0.00045155	4	15683	15683;15727;15772;15823		129.77	51.044	1	1952600			48093	1494	27567	27568	58870;58871;58872;58873	58870					0.07455200137110296
TIAEIKNLF	9	Unmodified	_TIAEIKNLF_					0	0	0		ENSG00000099797|ENST00000215567|TECR;ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000601652.5_1_19:14640444-14674077:+|nuORF;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF	ENSG00000099797|ENST00000215567|TECR	ENSG00000099797|ENST00000215567|TECR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.8055	1047.59645	0.66318	0.00034804	-0.62146	-0.00032614	0.04172	2.1895E-05	524.8050790161875	63.551	1.8137	63.543	63.136	64.949	-0.0085564	0.048489	-2.3076E-05	NaN	142.08	148	65	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1885400			48094	1494	27567	27568							0.07455200137110296
TIAELEPMT	9	Unmodified	_TIAELEPMT_					0	0	0		ENSG00000101842|ENST00000217957|VSIG1;nc|ENSG00000101842|Q86XK7-2|VSIG1	ENSG00000101842|ENST00000217957|VSIG1	ENSG00000101842|ENST00000217957|VSIG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.7510070800781	2	502.752075	1003.4896	0.18143	9.1213E-05	-2.43	-0.0012217	-2.2485	-0.0011305	502.7508270431682	48.91	0.38122	48.942	48.828	49.209	0.032043					21	13	2	0	0	0	0.088391	1	11234	11234		39.957	11.47	1	261330			48095	1723	27568	27569	58874	58874					-0.012007181395460975
TIAELEPMT	9	Unmodified	_TIAELEPMT_					0	0	0		ENSG00000101842|ENST00000217957|VSIG1;nc|ENSG00000101842|Q86XK7-2|VSIG1	ENSG00000101842|ENST00000217957|VSIG1	ENSG00000101842|ENST00000217957|VSIG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	502.752075	1003.4896	0.44307	0.00022275	-2.6092	-0.0013118	-2.1662	-0.001089	502.75068286124656	49.006	0.36236	49.006	48.856	49.218	0	-0.0046077	-7.3692E-05	NaN	39.957	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202810			48096	1723	27568	27569							-0.012007181395460975
TIAELEPMT	9	Unmodified	_TIAELEPMT_					0	0	0		ENSG00000101842|ENST00000217957|VSIG1;nc|ENSG00000101842|Q86XK7-2|VSIG1	ENSG00000101842|ENST00000217957|VSIG1	ENSG00000101842|ENST00000217957|VSIG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	502.752075	1003.4896	0.31501	0.00015837	-2.3877	-0.0012004	-2.0727	-0.0010421	502.7507659588364	49.039	0.52435	49.084	48.935	49.46	0.044891	0.073631	0.00014902	NaN	39.957	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308270			48097	1723	27568	27569							-0.012007181395460975
TIAHIASL	8	Unmodified	_TIAHIASL_					0	0	0		ENST00000496424.2_1_10:78317042-78317165:+|nuORF	ENST00000496424.2_1_10:78317042-78317165:+|nuORF	ENST00000496424.2_1_10:78317042-78317165:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.566650390625	2	413.245078	824.475603	0.083702	3.4589E-05	-0.32916	-0.00013603	-0.24546	-0.00010144	413.24486869946674	27.264	0.79575	27.253	26.879	27.675	-0.011562					69	27	3	0	0	0	0.33245	1	4564	4564		19.439	10.092	1	572050			48098	11234	27569	27570	58875	58875					0.056344172143212745
TIAHIASL	8	Unmodified	_TIAHIASL_					0	0	0		ENST00000496424.2_1_10:78317042-78317165:+|nuORF	ENST00000496424.2_1_10:78317042-78317165:+|nuORF	ENST00000496424.2_1_10:78317042-78317165:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	413.245078	824.475603	-0.1714	-7.083E-05	-0.3294	-0.00013612	-0.5008	-0.00020695	413.24490698484277	27.266	0.86573	27.266	26.897	27.763	0	0.00039746	3.4119E-05	NaN	19.439	74	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	473090			48099	11234	27569	27570							0.056344172143212745
TIANRRSI	8	Unmodified	_TIANRRSI_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.77740478515625	2	465.777608	929.540663	0.14808	6.8973E-05	-0.19059	-8.8772E-05	-0.042506	-1.9798E-05	465.7773889648621	69.509	2.264	69.487	68.595	70.859	-0.022079					157	81	3	0	0	0	0.44389	1	17831	17831		7.9102	0	1	439530	+		48100	18137	27570	27571	58876	58876					0.07307411740168845
TIAPALVSK	9	Unmodified	_TIAPALVSK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;chr1:8874917-8875789|488|27.23|0.78|5.12|-|ENST00000643438|ENO1,ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.28155517578125	2	450.28166	898.548768	0.31874	0.00014352	-0.25603	-0.00011529	0.062713	2.8238E-05	450.2814345120716	35.839	1.2674	35.839	35.547	36.815	0					105	45	4	0	0	0	0.069366	1	7184	7184		45.7	18.816	1	2845000			48101	1028	27571	27572	58877	58877					0.09543545936958253
TIAPALVSK	9	Unmodified	_TIAPALVSK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;chr1:8874917-8875789|488|27.23|0.78|5.12|-|ENST00000643438|ENO1,ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2817077636719	2	450.28166	898.548768	0.26842	0.00012086	-0.176	-7.9248E-05	0.09242	4.1615E-05	450.281465436761	35.703	1.3733	35.786	35.436	36.809	0.082355					102	49	4	0	0	0	0.086462	1	7153	7153		40.239	9.6027	1	2812800			48102	1028	27571	27572	58878	58878					0.09543545936958253
TIAPALVSK	9	Unmodified	_TIAPALVSK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;chr1:8874917-8875789|488|27.23|0.78|5.12|-|ENST00000643438|ENO1,ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2815856933594	2	450.28166	898.548768	0.24729	0.00011135	-0.1594	-7.1776E-05	0.087889	3.9575E-05	450.28148582098623	35.695	1.4667	35.781	35.372	36.839	0.08625					103	52	4	0	0	0	0.1645	1	7175	7175		33.445	15.31	1	2832700			48103	1028	27571	27572	58879	58879					0.09543545936958253
TIATALEYVYK	11	Unmodified	_TIATALEYVYK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.7696533203125	2	636.347729	1270.6809	0.15559	9.9009E-05	-1.5967	-0.0010161	-1.4411	-0.00091707	636.3465291340636	61.514	0.50303	61.514	61.281	61.784	0					36	18	3	0	0	0	0.0058944	1	15113	15113		101.54	83.17	1	398040			48104	3877	27572	27573	58880	58880					0.05639106163221186
TIATALEYVYK	11	Unmodified	_TIATALEYVYK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.7696533203125	2	636.347729	1270.6809	0.19233	0.00012239	-1.2587	-0.00080099	-1.0664	-0.00067859	636.8485665590988	61.395	0.67877	61.492	61.325	62.004	0.096985					37	24	2	0	0	0	0.0028958	1	15093	15093		115.06	88.791	1	392980			48105	3877	27572	27573	58881	58881					0.05639106163221186
TIATALEYVYK	11	Unmodified	_TIATALEYVYK_					0	0	0		ENSG00000135441|ENST00000548925|BLOC1S1;nc|ENSG00000135441|P78537-2|BLOC1S1;ENST00000549147.1_1_12:56113198-56113390:+|nuORF	ENSG00000135441|ENST00000548925|BLOC1S1	ENSG00000135441|ENST00000548925|BLOC1S1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.76953125	2	636.347729	1270.6809	0.29582	0.00018824	-1.6532	-0.001052	-1.3574	-0.0008638	636.3464718313015	61.496	0.60649	61.487	61.271	61.878	-0.0094566					37	21	2	0	0	0	0.00041909	1	15109	15109		125.18	98.913	1	353870			48106	3877	27572	27573	58882	58882					0.05639106163221186
TICSKLAEI	9	Unmodified	_TICSKLAEI_					0	0	0		nc|ENSG00000132950|Q9UJ78-5|ZMYM5;ENST00000382909.5_1_13:20398619-20425669:-|nuORF;ENSG00000132950|ENST00000337963|ZMYM5	nc|ENSG00000132950|Q9UJ78-5|ZMYM5	nc|ENSG00000132950|Q9UJ78-5|ZMYM5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.28704833984375	2	489.270435	976.526318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.174	1	77.23	76.73	77.73	0.055412								0	0	0	0.086509	1	19899	19899		49.933	19.296	1				48107	3679	27573	27574	58883	58883					0.03711578477009425
TIDIYGCGHRI	11	Unmodified	_TIDIYGCGHRI_					0	0	0		ENST00000594012.1_19:22001940-22034716:-|nuORF	ENST00000594012.1_19:22001940-22034716:-|nuORF	ENST00000594012.1_19:22001940-22034716:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3118896484375	2	624.313697	1246.61284	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.602	1	84.59	84.09	85.09	-0.01284								0	0	0	0.37382	1	22174	22174		2.9952	0.26005	1				48108	12213	27574	27575	58884	58884					-0.0006004196841331577
TIDLGVWEL	9	Unmodified	_TIDLGVWEL_					0	0	0			REV__ENST00000448672.1_1_2:136835787-136836042:+|nuORF	REV__ENST00000448672.1_1_2:136835787-136836042:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3004150390625	2	523.281857	1044.54916	0.37992	0.00019881	0.17123	8.96E-05	0.55115	0.00028841	523.2818128030551	74.235	0.37779	74.288	74.176	74.554	0.052361					13	12	2	0	0	0	0.25066	1	19028	19028		11.64	0	1	236640	+		48109	21098	27575	27576	58885	58885					0.028669208661540324
TIEFLCII	8	Unmodified	_TIEFLCII_					0	0	0			REV__ENSG00000007314|ENST00000435607|SCN4A	REV__ENSG00000007314|ENST00000435607|SCN4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.74786376953125	2	476.264622	950.514691	0.067888	3.2333E-05	1.5439	0.00073531	1.6118	0.00076764	476.2663896085976	26.749	0.73566	26.749	26.41	27.146	0					45	25	3	0	0	0	0.34185	1	4355	4355		10.183	0	1	72520	+		48110	13384	27576	27577	58886	58886					0.0374538145367751
TIEFLCII	8	Unmodified	_TIEFLCII_					0	0	0			REV__ENSG00000007314|ENST00000435607|SCN4A	REV__ENSG00000007314|ENST00000435607|SCN4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	476.264622	950.514691	0.20028	9.5387E-05	3.9015	0.0018581	4.1018	0.0019535	476.2663724257573	26.824	0.62221	26.803	26.419	27.041	-0.021412	0.021109	0.00021605	NaN	10.183	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72300	+		48111	13384	27576	27577							0.0374538145367751
TIEFLCII	8	Unmodified	_TIEFLCII_					0	0	0			REV__ENSG00000007314|ENST00000435607|SCN4A	REV__ENSG00000007314|ENST00000435607|SCN4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	476.264622	950.514691	0.37364	0.00017795	3.6996	0.001762	4.0732	0.0019399	476.266301340236	26.805	0.59171	26.793	26.541	27.132	-0.01156	0.0119	2.3712E-05	NaN	10.183	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81664	+		48112	13384	27576	27577							0.0374538145367751
TIEFRFQL	8	Unmodified	_TIEFRFQL_					0	0	0			REV__ENSG00000002746|ENST00000395891|HECW1	REV__ENSG00000002746|ENST00000395891|HECW1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.6986694335938	2	527.290017	1052.56548	0.73642	0.00038831	-0.33174	-0.00017492	0.40468	0.00021338	527.2900385439898	64.152	1.0895	64.152	63.665	64.755	0					87	39	3	0	0	0	0.34046	1	16110	16110		14.582	1.0738	1	488560	+		48113	13320	27577	27578	58887	58887					0.04130046822888289
TIFEGFAK	8	Unmodified	_TIFEGFAK_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;ENST00000495701.1_1_1:3746348-3747783:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.1641540527344	2	456.744911	911.475269	-0.17009	-7.7687E-05	-2.2102	-0.0010095	-2.3803	-0.0010872	456.7430227105384	25.54	0.47305	25.509	25.209	25.682	-0.031408					23	16	3	0	0	0	0.33245	1	4105	4105		13.508	0	1	67769			48114	2712	27578	27579	58888	58888					0.015989974944773166
TIFGKIIRK	9	Unmodified	_TIFGKIIRK_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.3521728515625	2	538.352951	1074.69135	0.42153	0.00022693	-1.0673	-0.00057458	-0.64576	-0.00034764	538.3522699269619	33.01	1.3284	33.01	32.72	34.048	0					120	47	4	0	0	0	0.0028542	3	6361	6311;6361;6413		103.42	51.151	1	2338700			48115	6365	27579	27580	58889;58890;58891	58890					0.15699178398972435
TIFGKIIRK	9	Unmodified	_TIFGKIIRK_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.3529663085938	2	538.352951	1074.69135	0.41744	0.00022473	-1.0701	-0.00057608	-0.65264	-0.00035135	538.3522939311699	32.883	1.3267	32.938	32.645	33.972	0.055313					118	47	4	0	0	0	0.01909	3	6278	6278;6324;6370		65.474	36.392	1	2505400			48116	6365	27579	27580	58892;58893;58894	58892					0.15699178398972435
TIFGKIIRK	9	Unmodified	_TIFGKIIRK_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.3530883789062	2	538.352951	1074.69135	0.46051	0.00024792	-1.0774	-0.00058002	-0.61688	-0.0003321	538.3523030072461	32.925	1.1851	32.979	32.682	33.867	0.054371					100	42	4	0	0	0	0.0041491	3	6286	6286;6314;6357		93.166	49.308	1	2476200			48117	6365	27579	27580	58895;58896;58897	58895					0.15699178398972435
TIFIIKGLRK	10	Unmodified	_TIFIIKGLRK_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.2760009765625	2	594.894983	1187.77541	0.24989	0.00014866	-0.046657	-2.7756E-05	0.20323	0.0001209	594.8948612368312	41.082	0.40507	41.082	40.847	41.252	0					24	14	2	0	0	0	0.31143	1	8793	8793		17.113	13.516	1	160390			48118	8212	27580	27581	58898	58898					0.1890370949586213
TIFIIKGLRK	10	Unmodified	_TIFIIKGLRK_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.2760620117188	2	594.894983	1187.77541	0.54156	0.00032217	0.029183	1.7361E-05	0.57075	0.00033953	594.8948400927886	40.878	0.28321	40.97	40.798	41.082	0.09267					18	10	2	0	0	0	0.28569	1	8724	8724		26.268	22.672	1	157690			48119	8212	27580	27581	58899	58899					0.1890370949586213
TIFIIKGLRK	10	Unmodified	_TIFIIKGLRK_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	594.894983	1187.77541	0.22565	0.00013424	0.16362	9.7334E-05	0.38926	0.00023157	594.8950207605981	40.901	0.37108	40.998	40.722	41.093	0.097263	-0.018915	0.0001312	NaN	26.268	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170260			48120	8212	27580	27581							0.1890370949586213
TIFKEKQI	8	Unmodified	_TIFKEKQI_					0	0	0		nc|ENSG00000105695|P20916-2|MAG;nc|ENSG00000105695|P20916-3|MAG;ENSG00000105695|ENST00000392213|MAG	nc|ENSG00000105695|P20916-2|MAG	nc|ENSG00000105695|P20916-2|MAG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.75347900390625	2	503.800217	1005.58588	0.45439	0.00022892	-0.67556	-0.00034035	-0.22117	-0.00011143	503.79987683321195	57.4	0.46207	57.4	57.116	57.578	0					26	16	3	0	0	0	0.32099	1	13839	13839		25.399	2.663	1	298030			48121	2010	27581	27582	58900	58900					0.08331217482702868
TIFKEKQI	8	Unmodified	_TIFKEKQI_					0	0	0		nc|ENSG00000105695|P20916-2|MAG;nc|ENSG00000105695|P20916-3|MAG;ENSG00000105695|ENST00000392213|MAG	nc|ENSG00000105695|P20916-2|MAG	nc|ENSG00000105695|P20916-2|MAG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.75335693359375	2	503.800217	1005.58588	0.18122	9.1301E-05	-0.20083	-0.00010118	-0.019605	-9.8769E-06	503.80002651296803	57.468	0.49221	57.451	57.197	57.69	-0.017197					31	17	3	0	0	0	0.33661	1	13868	13868		19.257	1.1106	1	318920			48122	2010	27581	27582	58901	58901					0.08331217482702868
TIFLAFWILL	10	Unmodified	_TIFLAFWILL_					0	0	0			REV__ENST00000228741.7_1_12:96660989-96661094:+|nuORF	REV__ENST00000228741.7_1_12:96660989-96661094:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2314147949219	3	412.917882	1235.73182	0.083866	3.463E-05	2.5349	0.0010467	2.6187	0.0010813	412.918476881556	34.14	0.13935	34.207	34.099	34.239	0.066704					6	4	2	0	0	0	0.31942	1	6695	6695		6.1918	0.40842	1	23531	+		48123	19452	27582	27583	58902	58902					0.12338099998760299
TIFLKKRPF	9	Unmodified	_TIFLKKRPF_					0	0	0			REV__ENSG00000115616|ENST00000233969|SLC9A2	REV__ENSG00000115616|ENST00000233969|SLC9A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.6893920898438	2	575.360776	1148.707	0.11915	6.8555E-05	1.1105	0.00063891	1.2296	0.00070747	575.3612998414263	61.947	0.37037	61.947	61.652	62.022	0					21	13	2	0	0	0	0.25417	1	15170	15170		2.0598	0	1	144120	+		48124	14888	27583	27584	58903	58903					0.1385946491602681
TIFLQLRSDIV	11	Unmodified	_TIFLQLRSDIV_					0	0	0			REV__nc|ENSG00000030304|O15146-3|MUSK	REV__nc|ENSG00000030304|O15146-3|MUSK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.2192687988281	3	435.590605	1303.74999	-0.11241	-4.8963E-05	0.081591	3.554E-05	-0.030814	-1.3422E-05	435.59055746029935	52.151	0.49408	52.151	51.86	52.354	0					25	17	2	0	0	0	0.33236	1	12142	12142		4.4062	0.28952	1	145980	+		48125	13493	27584	27585	58904	58904					0.11026190182792561
TIFLQLRSDIV	11	Unmodified	_TIFLQLRSDIV_					0	0	0			REV__nc|ENSG00000030304|O15146-3|MUSK	REV__nc|ENSG00000030304|O15146-3|MUSK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	435.590605	1303.74999	-0.23984	-0.00010447	0.13141	5.7242E-05	-0.10843	-4.7231E-05	435.5906822111047	52.193	0.42916	52.192	51.982	52.411	-0.00081253	0.041421	0.00018546	NaN	4.4062	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266620	+		48126	13493	27584	27585							0.11026190182792561
TIFVKALLS	9	Unmodified	_TIFVKALLS_					0	0	0			REV__ENSG00000187736|ENST00000356853|NHEJ1	REV__ENSG00000187736|ENST00000356853|NHEJ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.31329345703125	2	496.312961	990.611368	0.33009	0.00016383	-3.0764	-0.0015269	-2.7463	-0.001363	496.3127831705593	82.13	0.92476	82.199	81.849	82.774	0.068993					100	38	4	0	0	0	0.27532	1	21394	21394		12.532	0	1	385580	+		48127	18516	27585	27586	58905	58905					0.11568692005130288
TIGAAHIVFN	10	Unmodified	_TIGAAHIVFN_					0	0	0			REV__ENST00000427998.5_1_1:995191-995768:+|nuORF	REV__ENST00000427998.5_1_1:995191-995768:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.3247680664062	2	521.787641	1041.56073	0.64182	0.00033489	0.52055	0.00027162	1.1624	0.00060651	521.7874763694452	66.256	0.61799	66.256	65.927	66.545	0					37	21	2	0	0	0	0.30586	1	16486	16486		19.257	6.2145	1	200890	+		48128	20915	27586	27587	58906	58906					0.04161162680156849
TIGAAHIVFN	10	Unmodified	_TIGAAHIVFN_					0	0	0			REV__ENST00000427998.5_1_1:995191-995768:+|nuORF	REV__ENST00000427998.5_1_1:995191-995768:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	521.787641	1041.56073	0.58268	0.00030404	0.7908	0.00041263	1.3735	0.00071666	521.787587774538	66.112	0.57771	66.196	65.916	66.494	0.083832	-0.020358	0.00021508	NaN	19.257	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194400	+		48129	20915	27586	27587							0.04161162680156849
TIGFFACF	8	Unmodified	_TIGFFACF_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2057189941406	2	453.214932	904.415311	-0.59174	-0.00026818	-0.078706	-3.5671E-05	-0.67044	-0.00030385	453.21479923354474	34.419	0.58038	34.494	34.158	34.739	0.075306					32	20	2	0	0	0	0.43727	1	6786	6786		10.183	0.83596	1	72278			48130	3196	27587	27588	58907	58907					-0.04072016440409243
TIGFFACF	8	Unmodified	_TIGFFACF_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	453.214932	904.415311	-0.59174	-0.00026818	-0.078706	-3.5671E-05	-0.67044	-0.00030385	453.21479923354474	34.419	0.58038	34.494	34.158	34.739	0.075306	0.0645	0.00012915	NaN	10.183	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72278			48131	3196	27587	27588							-0.04072016440409243
TIGHKKGI	8	Unmodified	_TIGHKKGI_					0	0	0			REV__ENST00000436129.2_1_20:60551226-60583162:-|nuORF	REV__ENST00000436129.2_1_20:60551226-60583162:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.273193359375	2	427.266345	852.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.943	1	69.943	69.443	70.443	0								0	0	0	0.32762	1	17701	17701		24.674	12.142	1		+		48132	21002	27588	27589	58908	58908					0.08597812342566158
TIGHKKGI	8	Unmodified	_TIGHKKGI_					0	0	0			REV__ENST00000436129.2_1_20:60551226-60583162:-|nuORF	REV__ENST00000436129.2_1_20:60551226-60583162:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.27325439453125	2	427.266345	852.518136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.136	1	70.114	69.614	70.614	-0.022087								0	0	0	0.32762	1	17746	17746		24.674	5.2349	1		+		48133	21002	27588	27589	58909	58909					0.08597812342566158
TIGRVLDL	8	Unmodified	_TIGRVLDL_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-6|MON2	REV__nc|ENSG00000061987|Q7Z3U7-6|MON2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	444.25091552734375	2	443.77146	885.528367	0.21401	9.4974E-05	-1.1739	-0.00052096	-0.95992	-0.00042598	443.77104157149967	31.244	0.43704	31.285	31.07	31.507	0.040991					26	15	2	0	0	0	0.28969	1	5806	5806		36.044	3.9272	1	131710	+		48134	22890	27589	27590	58910	58910					0.08102375277155716
TIGTHELLS	9	Unmodified	_TIGTHELLS_					0	0	0			REV__ENST00000597347.5_1_3:181408747-181417456:+|nuORF	REV__ENST00000597347.5_1_3:181408747-181417456:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2851867675781	2	485.763832	969.513111	-0.11599	-5.6342E-05	2.811	0.0013655	2.6951	0.0013092	485.76447656674156	13.56	0.30099	13.461	13.362	13.663	-0.099291					19	10	3	0	0	0	0.24581	1	511	511		16.942	0	1	35001	+		48135	22611	27590	27591	58911	58911					0.027134636892810704
TIGTHELLS	9	Unmodified	_TIGTHELLS_					0	0	0			REV__ENST00000597347.5_1_3:181408747-181417456:+|nuORF	REV__ENST00000597347.5_1_3:181408747-181417456:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	485.763832	969.513111	-0.088746	-4.311E-05	1.4139	0.00068681	1.3251	0.0006437	485.76411898182494	13.521	0.17131	13.521	13.396	13.567	0	0.028803	-0.00035721	NaN	16.942	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40662	+		48136	22611	27590	27591							0.027134636892810704
TIGTHELLS	9	Unmodified	_TIGTHELLS_					0	0	0			REV__ENST00000597347.5_1_3:181408747-181417456:+|nuORF	REV__ENST00000597347.5_1_3:181408747-181417456:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	485.763832	969.513111	-0.11599	-5.6342E-05	2.811	0.0013655	2.6951	0.0013092	485.76447656674156	13.56	0.30099	13.461	13.362	13.663	-0.099291	-0.030701	0.0010002	NaN	16.942	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35001	+		48137	22611	27590	27591							0.027134636892810704
TIGTHELLS	9	Unmodified	_TIGTHELLS_					0	0	0			REV__ENST00000597347.5_1_3:181408747-181417456:+|nuORF	REV__ENST00000597347.5_1_3:181408747-181417456:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	485.763832	969.513111	-0.08721	-4.2363E-05	1.6662	0.00080938	1.579	0.00076702	485.76431080686655	13.561	0.24277	13.494	13.388	13.63	-0.067496	0.0018985	-0.00011206	NaN	16.942	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29302	+		48138	22611	27590	27591							0.027134636892810704
TIHHKRAF	8	Unmodified	_TIHHKRAF_					0	0	0			REV__nc|ENSG00000012048|P38398-8|BRCA1	REV__nc|ENSG00000012048|P38398-8|BRCA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.27691650390625	2	505.288143	1008.56173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.473	1	54.457	53.957	54.957	-0.015923								0	0	0	0.35014	1	12931	12931		14.582	1.0738	1		+		48139	13436	27591	27592	58912	58912					0.05779421839702081
TIHIFRVR	8	Unmodified	_TIHIFRVR_					0	0	0		ENSG00000169871|ENST00000306085|TRIM56	ENSG00000169871|ENST00000306085|TRIM56	ENSG00000169871|ENST00000306085|TRIM56	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.6572875976562	2	521.319443	1040.62433	0.90039	0.00046939	-1.5725	-0.00081978	-0.67213	-0.00035039	521.319280417386	50.205	0.72835	50.226	49.876	50.604	0.020695					39	26	2	0	0	0	0.33993	1	11517	11517		7.2892	2.5332	1	331380			48140	6393	27592	27593	58913	58913					0.10564567907886158
TIHILKCIAL	10	Unmodified	_TIHILKCIAL_					0	0	0			REV__THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	REV__THOC2|p.K1449Tfs*6|1|0.35|ENSG00000125676|chrX:123614155-123614156|-/TGGACAGTGG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8458251953125	2	562.846645	1123.67874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.71	1	119.73	119.23	120.23	0.027756								0	0	0	0.38201	1	30951	30951		0.45834	0	1		+		48141	15277	27593	27594	58914	58914					0.12184398944418717
TIHRRKRRRR	10	Unmodified	_TIHRRKRRRR_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.9747619628906	3	478.974893	1433.90285	0.073892	3.5393E-05	-0.19524	-9.3514E-05	-0.12135	-5.8121E-05	478.9747781300967	38.126	1.4738	38.126	37.82	39.294	0					184	52	5	0	0	0	0.41825	3	7886	7886;7975;8018		0.12286	0.12286	1	6824800			48142	12579	27594	27595	58915;58916;58917	58915					0.20325287933292202
TIHRRKRRRR	10	Unmodified	_TIHRRKRRRR_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.9747619628906	3	478.974893	1433.90285	0.027196	1.3026E-05	0.011165	5.348E-06	0.038361	1.8374E-05	478.9747934692172	39.785	1.7716	39.785	39.268	41.039	0					228	64	5	0	0	0	0.41025	4	8351	8351;8395;8446;8497		1.5923	1.5923	1	3638000			48143	12579	27594	27595	58918;58919;58920;58921	58918					0.20325287933292202
TIHRRKRRRR	10	Unmodified	_TIHRRKRRRR_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.974853515625	3	478.974893	1433.90285	0.30891	0.00014796	-0.26431	-0.0001266	0.044595	2.136E-05	478.97468531043614	39.623	1.8006	39.716	39.052	40.852	0.09267					225	64	5	0	0	0	0.40085	3	8303	8303;8401;8445		3.3196	3.3196	1	4354800			48144	12579	27594	27595	58922;58923;58924	58922					0.20325287933292202
TIHRRKRRRR	10	Unmodified	_TIHRRKRRRR_					0	0	0		nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	nc|ENSG00000062650|Q7Z5K2-2|WAPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.97491455078125	3	478.974893	1433.90285	0.2691	0.00012889	-0.24317	-0.00011647	0.025931	1.242E-05	478.9746928110271	39.628	2.138	39.727	39.262	41.4	0.099403					240	77	5	0	0	0	0.41025	4	8305	8305;8353;8402;8451		1.5923	1.5923	1	4645300			48145	12579	27594	27595	58925;58926;58927;58928	58925					0.20325287933292202
TIHWYSLIT	9	Unmodified	_TIHWYSLIT_					0	0	0			REV__ENSG00000182083|ENST00000319423|OR6B2	REV__ENSG00000182083|ENST00000319423|OR6B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2794799804688	2	567.303124	1132.5917	0.51306	0.00029106	-1.1033	-0.00062591	-0.59024	-0.00033484	567.3023286582403	63.689	1.3326	63.784	63.416	64.748	0.095726					115	47	4	0	0	0	0.1524	1	15808	15808		32.305	0	1	1647000	+		48146	18176	27595	27596	58929	58929					0.030703159943641367
TIHWYSLIT	9	Unmodified	_TIHWYSLIT_					0	0	0			REV__ENSG00000182083|ENST00000319423|OR6B2	REV__ENSG00000182083|ENST00000319423|OR6B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2796020507812	2	567.303124	1132.5917	0.45376	0.00025742	-1.0758	-0.00061031	-0.62206	-0.00035289	567.302451527061	63.82	1.6688	63.81	63.023	64.691	-0.0095329					123	60	4	0	0	0	0.1524	1	15838	15838		32.305	0	1	1759200	+		48147	18176	27595	27596	58930	58930					0.030703159943641367
TIIGVLGVP	9	Unmodified	_TIIGVLGVP_					0	0	0			REV__nc|ENSG00000164904|P49419-4|ALDH7A1	REV__nc|ENSG00000164904|P49419-4|ALDH7A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7799377441406	2	434.778754	867.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.168	1	40.261	39.761	40.761	0.09267								0	0	0	0.25499	1	8542	8542		4.756	0	1		+		48148	17186	27596	27597	58931	58931					0.10388447425293634
TIKEEKSI	8	Unmodified	_TIKEEKSI_					0	0	0		nc|ENSG00000100599|Q8TB24-4|RIN3;ENST00000418924.6_1_14:93042630-93154594:+|nuORF;ENSG00000100599|ENST00000216487|RIN3;ENST00000556385.5_1_14:93022207-93081825:+|nuORF	nc|ENSG00000100599|Q8TB24-4|RIN3	nc|ENSG00000100599|Q8TB24-4|RIN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.78204345703125	2	474.274032	946.533512	0.32662	0.00015491	0.11212	5.3175E-05	0.43874	0.00020808	474.27402213159326	29.399	0.46432	29.399	29.169	29.633	0					26	16	3	0	0	0	0.34218	1	5196	5196		9.3474	0	1	136810			48149	1611	27597	27598	58932	58932					0.058106343490862855
TIKEMLRIRRS	11	Unmodified	_TIKEMLRIRRS_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7684558-7685401:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.9711608886719	3	468.281889	1401.82384	0.25755	0.00012061	-0.73502	-0.0003442	-0.47747	-0.00022359	468.2814113891186	43.262	0.60881	43.34	43.127	43.736	0.077518					52	21	3	0	0	0	0.33169	1	9491	9491		6.2344	0	1	750270			48150	1072	27598	27599	58933	58933					0.13899835073470967
TIKLTKNCI	9	Unmodified	_TIKLTKNCI_					0	0	0			REV__nc|ENSG00000143674|Q5TCX8-2|MAP3K21	REV__nc|ENSG00000143674|Q5TCX8-2|MAP3K21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8161010742188	2	517.307352	1032.60015	0.39803	0.0002059	-4.3322	-0.0022411	-3.9342	-0.0020352	517.3046429195527	58.061	1.3384	58.061	57.768	59.107	0					72	46	3	0	0	0	0.12743	1	14191	14191		30.637	0	1	554960	+		48151	16194	27599	27600	58934	58934					0.08515546639341665
TIKNGDVSL	9	Unmodified	_TIKNGDVSL_					0	0	0			REV__ENST00000599335.5_1_19:39959399-39965382:+|nuORF	REV__ENST00000599335.5_1_19:39959399-39965382:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.78204345703125	2	473.763832	945.513111	0.30852	0.00014617	-0.56035	-0.00026547	-0.25183	-0.00011931	473.76368570839304	29.132	0.48909	29.132	28.952	29.441	0					27	17	2	0	0	0	0.25202	1	5196	5196		10.824	0	1	69452	+		48152	18634	27600	27601	58935	58935					0.03817463689279066
TIKPYNVSL	9	Unmodified	_TIKPYNVSL_					0	0	0		ENST00000478839.1_1_1:53683828-53683942:-|nuORF	ENST00000478839.1_1_1:53683828-53683942:-|nuORF	ENST00000478839.1_1_1:53683828-53683942:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.78515625	2	517.797675	1033.5808	0.57011	0.0002952	-1.583	-0.00081969	-1.0129	-0.00052449	517.7973313534487	51.217	0.61356	51.217	50.922	51.536	0					50	22	4	0	0	0	0.24787	1	12011	12011		15.248	7.3383	1	553450			48153	10981	27601	27602	58936	58936					0.06534913620089355
TIKPYNVSL	9	Unmodified	_TIKPYNVSL_					0	0	0		ENST00000478839.1_1_1:53683828-53683942:-|nuORF	ENST00000478839.1_1_1:53683828-53683942:-|nuORF	ENST00000478839.1_1_1:53683828-53683942:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7850952148438	2	517.797675	1033.5808	0.40618	0.00021032	-0.56969	-0.00029498	-0.16351	-8.4665E-05	517.7973996990204	51.196	0.54506	51.205	51.016	51.561	0.0095673					49	20	3	0	0	0	0.2141	1	12022	12022		21.59	0	1	663790			48154	10981	27601	27602	58937	58937					0.06534913620089355
TIKQYYVLC	9	Unmodified	_TIKQYYVLC_					0	0	0		ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B;ENST00000562140.2_1_16:70398455-70404584:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7810668945312	2	565.79936	1129.58417	0.71231	0.00040303	0.75315	0.00042613	1.4655	0.00082916	566.2999077820032	50.597	0.33089	50.597	50.407	50.738	0					25	11	3	0	0	0	0.25066	1	11738	11738		7.2892	0	1	246740			48155	5297	27602	27603	58938	58938					0.024558404024446645
TIKYLRIN	8	Unmodified	_TIKYLRIN_					0	0	0		L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|33|3|sense	L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|33|3|sense	L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|33|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2784423828125	2	510.813659	1019.61277	0.068919	3.5205E-05	0.12476	6.3729E-05	0.19368	9.8934E-05	510.8138390650868	42.954	0.59076	43.045	42.8	43.391	0.091362					41	21	3	0	0	0	0.32435	1	9451	9451		16.942	0	1	468340			48156	12449	27603	27604	58939	58939					0.10374326093881336
TIKYVGHK	8	Unmodified	_TIKYVGHK_					0	0	0		ENST00000585852.5_1_17:43309778-43311670:+|nuORF	ENST00000585852.5_1_17:43309778-43311670:+|nuORF	ENST00000585852.5_1_17:43309778-43311670:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.8830871582031	2	473.279452	944.544351	-0.20557	-9.7293E-05	1.6579	0.00078465	1.4523	0.00068735	473.27982295901006	14.195	0.19299	14.195	14.086	14.279	0					10	6	2	0	0	0	0.34408	1	637	637		2.3027	0	1	35739			48157	12112	27604	27605	58940	58940					0.06986081514037323
TILEMTQILK	10	Oxidation (M)	_TILEM(Oxidation (M))TQILK_		TILEM(1)TQILK		TILEM(82)TQILK	0	0	1		nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENST00000444990.5_1_2:243030866-243058384:+|nuORF;ENST00000456398.5_1_2:243030866-243061155:+|nuORF	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.34423828125	2	603.344132	1204.67371	0.5781	0.00034879	-0.019756	-1.192E-05	0.55834	0.00033687	603.3440564361281	51.54	0.50398	51.54	51.198	51.702	0					26	18	2	0	0	0	0.010655	1	12045	12045		81.915	38.143	1	489210			48158	12748	27605	27606	58941	58941		977			0.07956050291159045
TILEMTQILK	10	Oxidation (M)	_TILEM(Oxidation (M))TQILK_		TILEM(1)TQILK		TILEM(82)TQILK	0	0	1		nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENST00000444990.5_1_2:243030866-243058384:+|nuORF;ENST00000456398.5_1_2:243030866-243061155:+|nuORF	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3438720703125	2	603.344132	1204.67371	0.50518	0.0003048	-0.11094	-6.6934E-05	0.39424	0.00023786	603.3440179385353	51.478	0.50372	51.525	51.221	51.725	0.046574					27	18	2	0	0	0	0.010655	1	12028	12028		81.915	39.96	1	478330			48159	12748	27605	27606	58942	58942		977			0.07956050291159045
TILEMTQILK	10	Oxidation (M)	_TILEM(Oxidation (M))TQILK_		TILEM(1)TQILK		TILEM(100)TQILK	0	0	1		nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENST00000444990.5_1_2:243030866-243058384:+|nuORF;ENST00000456398.5_1_2:243030866-243061155:+|nuORF	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.3438110351562	2	603.344132	1204.67371	0.35435	0.0002138	0.44485	0.00026839	0.7992	0.00048219	603.8459499728399	51.605	0.48206	51.615	51.321	51.803	0.0095634					30	17	2	0	0	0	0.0034473	1	12032	12032		100.71	42.987	1	585740			48160	12748	27605	27606	58943	58943		977			0.07956050291159045
TILFSELHI	9	Unmodified	_TILFSELHI_					0	0	0		ENST00000298573.8_1_12:12629403-12629685:-|nuORF	ENST00000298573.8_1_12:12629403-12629685:-|nuORF	ENST00000298573.8_1_12:12629403-12629685:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2931518554688	2	536.8055	1071.59645	0.48661	0.00026121	0.16116	8.6512E-05	0.64777	0.00034773	536.8055916096096	67.632	0.99049	67.632	67.338	68.329	0					94	35	4	0	0	0	0.18803	1	17144	17144		25.399	4.9457	1	3339100			48161	9209	27606	27607	58944	58944					0.06351200137146407
TILKHLQN	8	Unmodified	_TILKHLQN_					0	0	0		RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;RALGAPB|p.A220Hfs*53|1|0.05|ENSG00000170471|chr20:38499550-38499551|-/CATCTTTG|frameshift_variant	RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant	RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7663879394531	2	483.790184	965.565815	0.42129	0.00020381	-1.2323	-0.00059618	-0.81103	-0.00039237	483.78936702083973	38.696	0.37916	38.794	38.542	38.921	0.097527					20	13	2	0	0	0	0.33245	1	8032	8032		8.5933	0	1	155050			48162	6455	27607	27608	58945	58945					0.08165466542766353
TILNKQKV	8	Unmodified	_TILNKQKV_					0	0	0			REV__ENSG00000164342|ENST00000296795|TLR3	REV__ENSG00000164342|ENST00000296795|TLR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.8211364746094	2	472.300384	942.586216	0.10786	5.0943E-05	-0.25925	-0.00012244	-0.15139	-7.15E-05	472.30027450615904	24.427	0.37086	24.388	24.166	24.537	-0.038927					19	12	2	0	0	0	0.34408	1	3773	3773		2.3027	0	1	36233	+		48163	17152	27608	27609	58946	58946					0.11262637202571568
TILPMSRAF	9	Unmodified	_TILPMSRAF_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.78515625	2	518.28642	1034.55829	0.55103	0.00028559	-0.96115	-0.00049815	-0.41012	-0.00021256	518.7872901213764	51.279	0.64312	51.279	50.949	51.592	0					46	23	3	0	0	0	0.24913	1	12011	12011		12.532	0.89125	1	605970			48164	3159	27609	27610	58947	58947					0.0423899095080742
TILPRQLW	8	Unmodified	_TILPRQLW_					0	0	0			REV__ENST00000558801.1_1_15:84960100-84962592:-|nuORF	REV__ENST00000558801.1_1_15:84960100-84962592:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8087768554688	2	513.808377	1025.6022	0.081742	4.2E-05	0.81919	0.0004209	0.90093	0.0004629	513.8086150378393	42.594	0.26622	42.679	42.514	42.78	0.085197					18	9	2	0	0	0	0.44569	1	9280	9280		7.2892	0	1	2121100	+		48165	22280	27610	27611	58948	58948					0.09042343439477918
TILPRQLW	8	Unmodified	_TILPRQLW_					0	0	0			REV__ENST00000558801.1_1_15:84960100-84962592:-|nuORF	REV__ENST00000558801.1_1_15:84960100-84962592:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.808377	1025.6022	0.014611	7.5075E-06	1.1392	0.00058535	1.1538	0.00059286	513.8085351242696	42.545	0.42869	42.545	42.277	42.706	0	-0.066999	0.00022722	NaN	7.2892	44	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2420600	+		48166	22280	27610	27611							0.09042343439477918
TILPRQLW	8	Unmodified	_TILPRQLW_					0	0	0			REV__ENST00000558801.1_1_15:84960100-84962592:-|nuORF	REV__ENST00000558801.1_1_15:84960100-84962592:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	513.808377	1025.6022	0.081742	4.2E-05	0.81919	0.0004209	0.90093	0.0004629	513.8086150378393	42.594	0.26622	42.679	42.514	42.78	0.085197	0.066999	-0.00010167	NaN	7.2892	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2121100	+		48167	22280	27610	27611							0.09042343439477918
TILRSVPN	8	Unmodified	_TILRSVPN_					0	0	0		ENSG00000198727|ENST00000361789|MT-CYB	ENSG00000198727|ENST00000361789|MT-CYB	ENSG00000198727|ENST00000361789|MT-CYB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.765869140625	2	450.269084	898.523616	0.41055	0.00018486	0.26514	0.00011938	0.67569	0.00030424	450.26983913941683	64.352	1.4988	64.352	63.256	64.755	0					98	54	3	0	0	0	0.33993	1	15675	15675		11.64	3.7301	1	166880			48168	8111	27611	27612	58949	58949					0.07029491134380805
TILSLEIDH	9	Unmodified	_TILSLEIDH_					0	0	0			REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	REV__nc|ENSG00000100359|Q96HU1-2|SGSM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7843017578125	2	520.784764	1039.55498	0.23032	0.00011995	-0.21699	-0.000113	0.013333	6.9434E-06	520.7843363132139	96.717	1.8661	96.788	95.915	97.781	0.070465					529	186	4	0	0	0	0.33018	1	25853	25853		4.3292	0	1	1911100	+		48169	14188	27612	27613	58950	58950					0.036780193777985914
TILTGLLSF	9	Unmodified	_TILTGLLSF_					0	0	0		ENST00000464036.5_1_1:1190585-1197670:-|nuORF;nc|ENSG00000160087|Q8N2K1-2|UBE2J2;ENSG00000160087|ENST00000349431|UBE2J2;nc|ENSG00000160087|Q8N2K1-3|UBE2J2	ENST00000464036.5_1_1:1190585-1197670:-|nuORF	ENST00000464036.5_1_1:1190585-1197670:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.3066101074219	2	482.789318	963.564084	0.39754	0.00019193	0.62751	0.00030296	1.025	0.00049488	482.7895491147148	79.011	0.63878	79.011	78.828	79.467	0					46	26	2	0	0	0	0.25066	1	20429	20429		7.2892	0	1	132350			48170	5436	27613	27614	58951	58951					0.08084412734149282
TILTGLLSF	9	Unmodified	_TILTGLLSF_					0	0	0		ENST00000464036.5_1_1:1190585-1197670:-|nuORF;nc|ENSG00000160087|Q8N2K1-2|UBE2J2;ENSG00000160087|ENST00000349431|UBE2J2;nc|ENSG00000160087|Q8N2K1-3|UBE2J2	ENST00000464036.5_1_1:1190585-1197670:-|nuORF	ENST00000464036.5_1_1:1190585-1197670:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	482.789318	963.564084	0.53025	0.000256	0.59073	0.0002852	1.121	0.0005412	482.78947541804143	79.146	0.89648	79.117	78.799	79.696	-0.028931	0.040689	-4.6028E-05	NaN	7.2892	51	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141720			48171	5436	27613	27614							0.08084412734149282
TIMEEQLVLK	10	Oxidation (M)	_TIM(Oxidation (M))EEQLVLK_		TIM(1)EEQLVLK		TIM(65)EEQLVLK	0	0	1		ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.3340454101562	2	610.333764	1218.65297	0.69247	0.00042264	-0.38274	-0.0002336	0.30974	0.00018904	610.3333659591184	45.66	0.58043	45.66	45.393	45.974	0					33	20	2	0	0	0	0.026238	1	10263	10263		64.927	44.512	1	384810			48172	7003	27614	27615	58952	58952		787			0.05239459911490485
TIMEEQLVLK	10	Oxidation (M)	_TIM(Oxidation (M))EEQLVLK_		TIM(1)EEQLVLK		TIM(71)EEQLVLK	0	0	1		ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.334228515625	2	610.333764	1218.65297	0.56005	0.00034182	-0.051032	-3.1146E-05	0.50902	0.00031067	610.333635493145	45.509	0.53465	45.569	45.336	45.871	0.059837					29	18	2	0	0	0	0.020733	1	10199	10199		70.929	43.3	1	386810			48173	7003	27614	27615	58953	58953		787			0.05239459911490485
TIMEEQLVLK	10	Oxidation (M)	_TIM(Oxidation (M))EEQLVLK_		TIM(1)EEQLVLK		TIM(61)EEQLVLK	0	0	1		ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	ENSG00000177646|ENST00000308982|ACAD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.3333740234375	2	610.333764	1218.65297	0.426	0.00026	-0.18685	-0.00011404	0.23915	0.00014596	610.3336065722705	45.504	0.45348	45.569	45.358	45.811	0.065048					38	16	3	0	0	0	0.041387	1	10202	10202		60.899	26.498	1	443090			48174	7003	27614	27615	58954	58954		787			0.05239459911490485
TIMKTLLFL	9	Unmodified	_TIMKTLLFL_					0	0	0			REV__ENST00000360864.8_1_20:62564729-62564939:+|nuORF	REV__ENST00000360864.8_1_20:62564729-62564939:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.330322265625	2	540.330296	1078.64604	0.19338	0.00010449	0.11059	5.9755E-05	0.30397	0.00016424	540.3304122307428	81.375	1.076	81.444	81.078	82.154	0.068993					181	51	5	0	0	0	0.32733	1	21300	21300		4.756	4.756	1	1439000	+		48175	20269	27615	27616	58955	58955					0.10986191821598368
TIMKTLLFL	9	Unmodified	_TIMKTLLFL_					0	0	0			REV__ENST00000360864.8_1_20:62564729-62564939:+|nuORF	REV__ENST00000360864.8_1_20:62564729-62564939:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3297119140625	2	540.330296	1078.64604	0.74707	0.00040366	-0.41183	-0.00022252	0.33523	0.00018114	540.3301035963427	84.093	0.51366	84.076	83.998	84.512	-0.016823					31	21	2	0	0	0	0.30623	1	22063	22063		7.9102	2.6795	1	284270	+		48176	20269	27615	27616	58956	58956					0.10986191821598368
TIMPIITE	8	Unmodified	_TIMPIITE_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.5675964355469	2	459.254254	916.493955	-0.10698	-4.9129E-05	-0.80537	-0.00036987	-0.91235	-0.000419	459.2542916119972	61.432	1.0593	61.432	61.128	62.187	0					77	39	3	0	0	0	0.33245	1	15284	15284		13.508	0	1	270680			48177	6992	27616	27617	58957	58957					0.032367910740276784
TIMPKDIQLAR	11	Oxidation (M)	_TIM(Oxidation (M))PKDIQLAR_		TIM(1)PKDIQLAR		TIM(120)PKDIQLAR	0	0	1		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.5797424316406	3	434.579712	1300.71731	0.15851	6.8886E-05	-0.47956	-0.00020841	-0.32105	-0.00013952	434.5796694396247	36.98	1.7901	36.98	36.416	38.206	0					183	63	4	0	0	0	1.8383E-05	6	7516	7464;7516;7560;7609;7661;7748		116.41	99.571	1	8105400			48178	3640	27617	27618	58958;58959;58960;58961;58962;58963	58959		460			0.07897659788295641
TIMPKDIQLAR	11	Oxidation (M)	_TIM(Oxidation (M))PKDIQLAR_		TIM(1)PKDIQLAR		TIM(110)PKDIQLAR	0	0	1		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.5799255371094	3	434.579712	1300.71731	0.089906	3.9071E-05	-0.43523	-0.00018914	-0.34532	-0.00015007	434.5797222484995	36.817	2.0029	36.904	36.367	38.37	0.08741					244	72	6	0	0	0	0.00022304	6	7530	7441;7488;7530;7571;7612;7659		107.71	90.872	1	8352800			48179	3640	27617	27618	58964;58965;58966;58967;58968;58969	58966		460			0.07897659788295641
TIMPKDIQLAR	11	Oxidation (M)	_TIM(Oxidation (M))PKDIQLAR_		TIM(1)PKDIQLAR		TIM(110)PKDIQLAR	0	0	1		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;ENST00000593254.1_1_17:73774678-73775846:-|nuORF;ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.5798645019531	3	434.579712	1300.71731	0.26887	0.00011685	-0.60864	-0.0002645	-0.33976	-0.00014765	434.5796481648806	36.86	2.3058	36.953	36.339	38.645	0.093014					237	83	5	0	0	0	0.00022304	5	7512	7428;7472;7512;7555;7602		107.71	90.872	1	8647100			48180	3640	27617	27618	58970;58971;58972;58973;58974	58972		460			0.07897659788295641
TIMRWFRRHKV	11	Unmodified	_TIMRWFRRHKV_					0	0	0		ENSG00000136286|ENST00000258787|MYO1G;ENST00000463516.5_1_7:45003626-45005995:-|nuORF;ENST00000483585.5_1_7:45002340-45005995:-|nuORF	ENSG00000136286|ENST00000258787|MYO1G	ENSG00000136286|ENST00000258787|MYO1G	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8135986328125	3	510.62599	1528.85614	0.66305	0.00033857	2.4444	0.0012482	3.1074	0.0015867	510.9614374173235	50.099	0.23442	50.144	50.033	50.268	0.044891					13	8	2	0	0	0	0.33287	1	11602	11602		2.8433	2.3888	1	91873			48181	3969	27618	27619	58975	58975					0.11286667267131634
TINDIVHVV	9	Unmodified	_TINDIVHVV_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30;ENST00000474183.1_1_3:47889269-47889497:+|nuORF	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7649841308594	2	505.287474	1008.5604	0.62673	0.00031668	-0.042065	-2.1255E-05	0.58466	0.00029542	505.2873954331626	54.551	0.35784	54.551	54.322	54.68	0					17	12	2	0	0	0	0.20881	1	12971	12971		21.537	2.28	1	155910			48182	3611	27619	27620	58976	58976					0.05645742960280131
TINDIVHVV	9	Unmodified	_TINDIVHVV_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30;ENST00000474183.1_1_3:47889269-47889497:+|nuORF	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.76507568359375	2	505.287474	1008.5604	0.57664	0.00029137	0.46989	0.00023743	1.0465	0.0005288	505.28773750619104	54.493	0.39504	54.556	54.382	54.777	0.063202					20	14	2	0	0	0	0.18936	1	12950	12950		32.786	7.3864	1	179750			48183	3611	27619	27620	58977	58977					0.05645742960280131
TINGHNAEV	9	Unmodified	_TINGHNAEV_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.777587890625	2	477.735606	953.456658	0.10651	5.0883E-05	0.47761	0.00022817	0.58412	0.00027905	477.7357544666489	19.929	0.94299	19.929	19.627	20.57	0					74	34	4	0	0	0	0.12563	1	2363	2363		32.786	5.902	1	537110			48184	3053	27620	27621	58978	58978					-0.021931641473884156
TINGHNAEV	9	Unmodified	_TINGHNAEV_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.77752685546875	2	477.735606	953.456658	0.3667	0.00017519	0.064937	3.1023E-05	0.43164	0.00020621	477.73566571042954	20.092	1.0516	19.976	19.642	20.693	-0.11592					81	37	4	0	0	0	0.099099	1	2423	2423		55.503	25.278	1	494670			48185	3053	27620	27621	58979	58979					-0.021931641473884156
TINGHNAEV	9	Unmodified	_TINGHNAEV_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7775573730469	2	477.735606	953.456658	0.47495	0.0002269	-0.091484	-4.3705E-05	0.38346	0.00018319	477.7355675075092	20.043	0.95705	19.987	19.678	20.635	-0.055693					73	34	4	0	0	0	0.089483	1	2403	2403		59.368	24.967	1	568170			48186	3053	27620	27621	58980	58980					-0.021931641473884156
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.55792236328125	3	413.558187	1237.65273	-0.36766	-0.00015205	-0.07094	-2.9338E-05	-0.43861	-0.00018139	413.55819157331354	13.326	0.72878	13.326	13.174	13.902	0					74	25	5	0	0	0	0.258	1	385	385		17.42	12.372	1	726700			48187	3053	27621	27622	58981	58981					0.04341221026493258
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8333129882812	2	619.833643	1237.65273	-0.072075	-4.4675E-05	-0.61305	-0.00037999	-0.68512	-0.00042466	619.8335949425447	13.343	0.39662	13.343	13.2	13.597	0					38	13	4	0	0	0	0.088648	1	395	395		42.068	29.025	1	214940			48188	3053	27621	27622	58982	58982					0.04341221026493258
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8331909179688	2	619.833643	1237.65273	-0.24288	-0.00015055	-0.67248	-0.00041683	-0.91537	-0.00056738	619.8335049564029	13.432	0.35629	13.333	13.217	13.573	-0.099291					39	12	4	0	0	0	0.029474	1	428	428		59.177	43.929	1	210410			48189	3053	27621	27622	58983	58983					0.04341221026493258
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.55816650390625	3	413.558187	1237.65273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.403	1	13.304	12.804	13.804	-0.099291								0	0	0	0.29248	1	416	416		17.42	8.9756	1				48190	3053	27621	27622	58984	58984					0.04341221026493258
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5579833984375	3	413.558187	1237.65273	-0.16812	-6.9526E-05	-0.20817	-8.6091E-05	-0.37629	-0.00015562	413.5581032580682	13.412	0.64046	13.344	13.189	13.829	-0.067496					69	22	5	0	0	0	0.34858	1	410	410		14.825	9.7772	1	777170			48191	3053	27621	27622	58985	58985					0.04341221026493258
TINGHNAEVRK	11	Unmodified	_TINGHNAEVRK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8334350585938	2	619.833643	1237.65273	-0.1849	-0.00011461	-0.73288	-0.00045426	-0.91778	-0.00056887	619.833527740796	13.435	0.44441	13.367	13.215	13.66	-0.067496					37	15	4	0	0	0	0.0096108	1	422	422		70.496	52.122	1	190520			48192	3053	27621	27622	58986	58986					0.04341221026493258
TINLQAREY	9	Unmodified	_TINLQAREY_					0	0	0			REV__Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|96|3|sense	REV__Harlequin-int_dup434|chr17:80408952-80412448:+|1.933741223792221|0.062102870221105|4.96|534.0|96|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.2946166992188	2	554.293288	1106.57202	0.16382	9.0804E-05	-0.29676	-0.00016449	-0.13294	-7.3687E-05	554.2935795271562	23.637	0.28547	23.637	23.448	23.734	0					18	9	3	0	0	0	0.34923	1	3520	3520		1.4819	0	1	43101	+		48193	22725	27622	27623	58987	58987					0.0229993998361806
TINNHRLIL	9	Unmodified	_TINNHRLIL_					0	0	0			REV__ENSG00000139211|ENST00000550413|AMIGO2	REV__ENSG00000139211|ENST00000550413|AMIGO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.328125	2	547.327465	1092.64038	1.0336	0.00056573	0.15233	8.3377E-05	1.186	0.00064911	547.327469001136	50.726	0.84713	50.736	50.298	51.145	0.0095634					61	31	3	0	0	0	0.16283	1	11810	11810		29.082	1.4528	1	561600	+		48194	15976	27623	27624	58988	58988					0.09776229354133648
TINRKSKFYF	10	Unmodified	_TINRKSKFYF_					0	0	0			REV__ENST00000555784.5_1_10:84711250-84718713:+|nuORF	REV__ENST00000555784.5_1_10:84711250-84718713:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7799377441406	3	435.243429	1302.70846	0.054984	2.3931E-05	0.012741	5.5453E-06	0.067725	2.9477E-05	435.2433996221917	39.669	0.73583	39.762	39.548	40.284	0.09267					52	25	3	0	0	0	0.31969	1	8542	8542		5.7834	1.5939	1	287890	+		48195	22251	27624	27625	58989	58989					0.06921054214126343
TINRKSKFYF	10	Unmodified	_TINRKSKFYF_					0	0	0			REV__ENST00000555784.5_1_10:84711250-84718713:+|nuORF	REV__ENST00000555784.5_1_10:84711250-84718713:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	435.243429	1302.70846	-0.26593	-0.00011574	0.29176	0.00012698	0.025828	1.1241E-05	435.2436510715226	39.936	0.51694	39.936	39.644	40.161	0	0.10715	0.00064958	NaN	5.7834	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256650	+		48196	22251	27624	27625							0.06921054214126343
TINTLERTI	9	Unmodified	_TINTLERTI_					0	0	0			REV__nc|ENSG00000134376|P82279-4|CRB1	REV__nc|ENSG00000134376|P82279-4|CRB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3031005859375	2	530.803488	1059.59242	0.12623	6.7002E-05	-1.4636	-0.0007769	-1.3374	-0.00070989	531.3049157731557	60.109	1.0747	60.109	59.533	60.607	0					88	38	4	0	0	0	0.28674	1	14620	14620		10.824	0.64053	1	1870700	+		48197	15672	27625	27626	58990	58990					0.0650111064342127
TIPHTQEAF	9	Unmodified	_TIPHTQEAF_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8167114257812	2	522.261456	1042.50836	0.79635	0.0004159	0.20367	0.00010637	1	0.00052227	522.2617834786508	45.611	0.41154	45.611	45.476	45.888	0					19	14	2	0	0	0	0.25417	1	10193	10193		8.5933	6.749	1	79318			48198	412	27626	27627	58991	58991					-0.011194204534831442
TIPINRKKG	9	Unmodified	_TIPINRKKG_					0	0	0		L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|28|1|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|28|1|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|28|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.824951171875	2	513.824558	1025.63456	0.080571	4.1399E-05	0.57822	0.0002971	0.65879	0.0003385	513.8249970595836	33.236	1.3544	33.291	32.985	34.339	0.054371					105	48	4	0	0	0	0.15219	1	6451	6451		30.637	5.2372	1	4192800			48199	12475	27627	27628	58992	58992					0.12277130842471706
TIPLVPLRKL	10	Unmodified	_TIPLVPLRKL_					0	0	0		ENSG00000185112|ENST00000329759|FAM43A	ENSG00000185112|ENST00000329759|FAM43A	ENSG00000185112|ENST00000329759|FAM43A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3114624023438	2	575.389534	1148.76451	0.467	0.00026871	-0.16784	-9.6574E-05	0.29916	0.00017214	575.389334092992	53.88	0.40735	53.88	53.698	54.105	0					30	14	3	0	0	0	0.31039	1	12732	12732		18.146	1.0335	1	333820			48200	7508	27628	27629	58993	58993					0.19608307121598045
TIPPAKEV	8	Unmodified	_TIPPAKEV_					0	0	0		COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1;ENST00000432943.6_1_8:121160081-121289735:+|nuORF;nc|ENSG00000187955|Q05707-3|COL14A1	COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant	COL14A1|p.G1581Kfs*38|1|0.03|ENSG00000187955|chr8:120332690-120332691|-/AAAAC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.7524719238281	2	427.752736	853.490919	-0.035399	-1.5142E-05	-0.26571	-0.00011366	-0.30111	-0.0001288	427.75249179457063	58.673	0.90467	58.764	58.53	59.434	0.091305					74	31	3	0	0	0	0.37937	1	14312	14312		21.747	0	1	450320			48201	195	27629	27630	58994	58994					0.05831284011514981
TIPSWALSI	9	Unmodified	_TIPSWALSI_					0	0	0			REV__nc|ENSG00000164654|Q9NXC5-2|MIOS	REV__nc|ENSG00000164654|Q9NXC5-2|MIOS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.788818359375	2	494.279118	986.543683	0.37186	0.0001838	0.14282	7.0594E-05	0.51468	0.00025439	494.2793656076692	81.627	1.8104	81.603	81.161	82.971	-0.02404					188	74	5	0	0	0	0.079066	1	21445	21445		42.095	1.646	1	11735000	+		48202	17171	27630	27631	58995	58995					0.049872420743326984
TIPYRPKPA	9	Unmodified	_TIPYRPKPA_					0	0	0		ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3	ENST00000468429.5_1_21:47321003-47359956:+|nuORF	ENST00000468429.5_1_21:47321003-47359956:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2901611328125	2	521.805834	1041.59712	0.56241	0.00029347	0.41678	0.00021748	0.9792	0.00051095	521.806165985603	40.642	0.56502	40.642	40.445	41.01	0					27	20	2	0	0	0	0.24581	1	8718	8718		16.942	0	1	94972			48203	7377	27631	27632	58996	58996					0.0779803957684635
TIQKTTLVV	9	Unmodified	_TIQKTTLVV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7975158691406	2	501.813325	1001.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.947	1	91.947	91.447	92.447	0								0	0	0	0.2362	1	24435	24435		10.824	2.9138	1				48204	5186	27632	27633	58997	58997					0.11135486654177384
TIQLRRCLTR	10	Unmodified	_TIQLRRCLTR_					0	0	0			REV__ENSG00000164830|ENST00000517566|OXR1	REV__ENSG00000164830|ENST00000517566|OXR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.8167114257812	2	630.371881	1258.72921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.053	1	70.031	69.531	70.531	-0.022087								0	0	0	0.37235	1	17722	17722		2.9952	0	1		+		48205	17180	27633	27634	58998	58998					0.11019321322123687
TIQRFERELYL	11	Unmodified	_TIQRFERELYL_					0	0	0			REV__ENSG00000197343|ENST00000252713|ZNF655	REV__ENSG00000197343|ENST00000252713|ZNF655	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2878112792969	3	489.936664	1466.78816	0.26318	0.00012894	-1.3319	-0.00065255	-1.0687	-0.00052361	490.27161036094265	25.08	0.39428	25.08	24.902	25.296	0					17	13	2	0	0	0	0.3333	1	3891	3891		1.3296	0	1	70704	+		48206	18729	27634	27635	58999	58999					0.07344076097479046
TIQSGEQPYK	10	Unmodified	_TIQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.790771484375	2	575.790578	1149.5666	-0.00071008	-4.0886E-07	0.29068	0.00016737	0.28997	0.00016696	575.7907716402918	22.788	1.1475	22.788	22.446	23.593	0					109	39	4	0	0	0	0.0094438	1	3251	3251		112.04	112.04	1	1186000			48207	6289	27635	27636	59000	59000					-0.002197835988681618
TIQSGEQPYK	10	Unmodified	_TIQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7907104492188	2	575.790578	1149.5666	0.12303	7.0837E-05	0.20951	0.00012064	0.33254	0.00019147	575.7906585057425	22.928	1.2275	22.841	22.403	23.631	-0.08761					109	43	4	0	0	0	0.022722	1	3244	3244		68.76	47.223	1	1431800			48208	6289	27635	27636	59001	59001					-0.002197835988681618
TIQSGEQPYK	10	Unmodified	_TIQSGEQPYK_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7908325195312	2	575.790578	1149.5666	0.14108	8.1234E-05	0.19234	0.00011075	0.33343	0.00019198	575.7906728732387	22.958	1.1217	22.913	22.553	23.675	-0.044867					111	39	4	0	0	0	0.0011491	2	3292	3248;3292		118.81	82.307	1	1451800			48209	6289	27635	27636	59002;59003	59003					-0.002197835988681618
TIQSSQMLKL	10	Unmodified	_TIQSSQMLKL_					0	0	0			REV__CNOT11|p.R492Lfs*14|1|0.04|ENSG00000158435|chr2:101269354-101269355|-/T|frameshift_variant	REV__CNOT11|p.R492Lfs*14|1|0.04|ENSG00000158435|chr2:101269354-101269355|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.2699584960938	2	574.820824	1147.62709	0.13896	7.9878E-05	1.0461	0.00060135	1.1851	0.00068122	574.8214902742791	23.034	0.55749	22.946	22.658	23.216	-0.087608					21	19	2	0	0	0	0.31958	1	3347	3347		5.2969	1.3525	1	47934	+		48210	13236	27636	27637	59004	59004					0.05918610459889351
TIRDLLIEV	9	Unmodified	_TIRDLLIEV_					0	0	0			REV__ENSG00000196455|ENST00000356763|PIK3R4	REV__ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.3242797851562	2	536.324057	1070.63356	0.49044	0.00026303	0.13702	7.3487E-05	0.62746	0.00033652	536.324046829916	66.869	1.1412	66.869	66.369	67.51	0					99	39	4	0	0	0	0.14786	1	16816	16816		31.268	0	1	1375100	+		48211	18654	27637	27638	59005	59005					0.10106871682910423
TIRDRSIAI	9	Unmodified	_TIRDRSIAI_					0	0	0			REV__ENST00000575880.1_1_17:4126224-4126446:+|nuORF	REV__ENST00000575880.1_1_17:4126224-4126446:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.8135986328125	2	522.811648	1043.60874	0.61531	0.00032169	3.1866	0.001666	3.8019	0.0019877	522.8130357274163	45.346	0.81055	45.346	44.829	45.64	0					59	29	3	0	0	0	0.12642	1	10162	10162		34.402	1.616	1	734810	+		48212	22447	27638	27639	59006	59006					0.08868236600164892
TIRELFDMPL	10	Unmodified	_TIRELFDMPL_					0	0	0		nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.209716796875	3	412.221525	1233.64274	0.28029	0.00011554	-2.6355	-0.0010864	-2.3552	-0.00097087	412.2205051624347	37.871	0.46482	37.962	37.744	38.209	0.090881					46	16	4	0	0	0	0.34887	1	7885	7885		12.873	4.4283	1	203120			48213	1161	27639	27640	59007	59007					0.03526896976927674
TIRETTEEM	9	Oxidation (M)	_TIRETTEEM(Oxidation (M))_		TIRETTEEM(1)		TIRETTEEM(59)	0	0	1		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.258544921875	2	563.258253	1124.50195	0.25208	0.00014199	0.26114	0.00014709	0.51322	0.00028908	563.2583174652423	17.069	0.7328	17.069	16.895	17.628	0					47	25	3	0	0	0	0.032589	1	1522	1522		59.368	38.915	1	131400			48214	5969	27640	27641	59008	59008		702			-0.055317264671884914
TIRETTEEM	9	Oxidation (M)	_TIRETTEEM(Oxidation (M))_		TIRETTEEM(1)		TIRETTEEM(63)	0	0	1		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.25830078125	2	563.258253	1124.50195	0.31562	0.00017777	0.12761	7.1878E-05	0.44323	0.00024965	563.258261248553	17.18	0.73279	17.12	16.917	17.65	-0.060429					51	25	3	0	0	0	0.022205	1	1547	1547		63.227	39.207	1	118570			48215	5969	27640	27641	59009	59009		702			-0.055317264671884914
TIRHTRKNLV	10	Unmodified	_TIRHTRKNLV_					0	0	0			REV__nc|ENSG00000196182|Q8N2I9-3|STK40	REV__nc|ENSG00000196182|Q8N2I9-3|STK40	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.5665588378906	3	413.254439	1236.74149	0.14846	6.1351E-05	-0.60698	-0.00025084	-0.45852	-0.00018949	413.2540695650885	27.042	0.96015	27.02	26.681	27.641	-0.021412					56	33	3	0	0	0	0.32051	1	4550	4550		3.8763	0.55669	1	249020	+		48216	18627	27641	27642	59010	59010					0.1325868105684549
TIRHTRKNLV	10	Unmodified	_TIRHTRKNLV_					0	0	0			REV__nc|ENSG00000196182|Q8N2I9-3|STK40	REV__nc|ENSG00000196182|Q8N2I9-3|STK40	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	413.254439	1236.74149	-0.10478	-4.3299E-05	-0.37589	-0.00015534	-0.48066	-0.00019864	413.2541942450658	27.084	0.68049	27.084	26.673	27.354	0	0.032156	0.0002338	NaN	1.9064	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235970	+		48217	18627	27641	27642							0.1325868105684549
TIRLCCRLM	9	Unmodified	_TIRLCCRLM_					0	0	0		ENST00000372813.3_1_20:43583733-43583772:-|nuORF	ENST00000372813.3_1_20:43583733-43583772:-|nuORF	ENST00000372813.3_1_20:43583733-43583772:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.8217163085938	2	554.793032	1107.57151	0.58365	0.0003238	-0.39609	-0.00021975	0.18755	0.00010405	555.2942714330273	52.933	0.37601	52.989	52.637	53.013	0.056259					16	13	2	0	0	0	0.2322	1	12354	12354		14.838	3.198	1	396560			48218	9852	27642	27643	59011	59011					0.022027824668839457
TIRPINKKG	9	Unmodified	_TIRPINKKG_					0	0	0			REV__nc|ENSG00000092964|Q16555|DPYSL2;REV__ENST00000519672.1_1_5:146788331-146833150:-|nuORF	REV__nc|ENSG00000092964|Q16555|DPYSL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8251342773438	2	513.824558	1025.63456	0.28728	0.00014761	0.095786	4.9217E-05	0.38306	0.00019683	513.824740209512	33.267	1.2214	33.323	33.002	34.224	0.055309					101	43	4	0	0	0	0.18803	1	6454	6454		25.399	0	1	3811300	+		48219	22905;21875	27643	27644	59012	59012					0.12277130842471706
TIRQYREL	8	Unmodified	_TIRQYREL_					0	0	0		ENST00000508918.5_1_4:16504706-16675844:-|nuORF;nc|ENSG00000169744|O43679-2|LDB2;nc|ENSG00000169744|O43679-3|LDB2;ENSG00000169744|ENST00000304523|LDB2	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	ENST00000508918.5_1_4:16504706-16675844:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7919311523438	2	539.803823	1077.59309	0.45253	0.00024428	1.9425	0.0010486	2.395	0.0012928	539.8048562930597	71.078	0.66324	71.139	70.8	71.463	0.060776					55	23	3	0	0	0	0.4397	1	18076	18076		9.3474	0	1	934060			48220	6382	27644	27645	59013	59013					0.057399500831252226
TIRRRLPF	8	Unmodified	_TIRRRLPF_					0	0	0		ENSG00000186086|ENST00000495380|NBPF6;ENSG00000196427|ENST00000415641|NBPF4;nc|ENSG00000186086|Q5VWK0-2|NBPF6	ENSG00000186086|ENST00000495380|NBPF6	ENSG00000186086|ENST00000495380|NBPF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2640380859375	2	529.832717	1057.65088	0.60157	0.00031873	-1.2587	-0.00066693	-0.65718	-0.0003482	529.8340166097867	68.878	0.3089	68.878	68.616	68.924	0					19	10	3	0	0	0	0.34297	1	17323	17323		6.3541	0	1	88527			48221	7585	27645	27646	59014	59014					0.12436256799219336
TIRYLLEL	8	Unmodified	_TIRYLLEL_					0	0	0			REV__ENST00000558439.5_1_15:51226794-51242057:+|nuORF	REV__ENST00000558439.5_1_15:51226794-51242057:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.8079833984375	2	510.808042	1019.60153	0.47023	0.0002402	-0.62862	-0.0003211	-0.15838	-8.0904E-05	510.80780902586696	64.008	0.59372	63.998	63.745	64.339	-0.0095291					48	21	3	0	0	0	0.16041	1	15900	15900		49.933	6.0747	1	609140	+		48222	13898	27646	27647	59015	59015					0.09251503999746546
TIRYPDPLI	9	Unmodified	_TIRYPDPLI_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENSG00000280969|ENST00000629237|RPS4Y2	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.311279296875	2	544.310949	1086.60735	0.48045	0.00026152	-0.41122	-0.00022383	0.069238	3.7687E-05	544.3110216882325	58.054	1.5285	58.054	57.552	59.081	0					113	53	4	0	0	0	0.015924	1	14050	14050		70.332	26.474	1	1407000			48223	8028	27647	27648	59016	59016					0.06750602511419856
TIRYPDPLI	9	Unmodified	_TIRYPDPLI_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENSG00000280969|ENST00000629237|RPS4Y2	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.311279296875	2	544.310949	1086.60735	0.61598	0.00033529	-0.68326	-0.00037191	-0.067278	-3.662E-05	544.310888817044	57.875	1.0624	57.961	57.518	58.581	0.085621					94	38	4	0	0	0	0.026579	1	13996	13996		61.602	17.744	1	1461800			48224	8028	27647	27648	59017	59017					0.06750602511419856
TIRYPDPLI	9	Unmodified	_TIRYPDPLI_					0	0	0		ENSG00000198034|ENST00000316084|RPS4X;ENSG00000280969|ENST00000629237|RPS4Y2	ENSG00000198034|ENST00000316084|RPS4X	ENSG00000198034|ENST00000316084|RPS4X	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.792724609375	2	544.310949	1086.60735	0.77137	0.00041986	-0.77179	-0.00042009	-0.00042361	-2.3058E-07	544.3107817019983	58.081	1.1362	58.063	57.606	58.743	-0.017197					101	41	4	0	0	0	0.059987	1	14111	14111		70.332	26.474	1	1315900			48225	8028	27647	27648	59018	59018					0.06750602511419856
TISDQEKRTA	10	Unmodified	_TISDQEKRTA_					0	0	0		ENST00000367112.1_2_6:158500311-158517393:+|nuORF;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2	ENST00000367112.1_2_6:158500311-158517393:+|nuORF	ENST00000367112.1_2_6:158500311-158517393:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.7987060546875	2	574.798934	1147.58332	-0.083603	-4.8055E-05	0.22173	0.00012745	0.13813	7.9398E-05	574.7990705440296	14.604	0.55718	14.538	14.261	14.818	-0.066067					42	19	3	0	0	0	0.39009	1	753	753		5.2969	5.2969	1	99568			48226	1107	27648	27649	59019	59019					0.015427172870886352
TISFASLSVPL	11	Unmodified	_TISFASLSVPL_					0	0	0			REV__ENSG00000168890|ENST00000334462|TMEM150A	REV__ENSG00000168890|ENST00000334462|TMEM150A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2794799804688	2	567.823889	1133.63323	0.41591	0.00023616	-2.2237	-0.0012627	-1.8078	-0.0010265	568.324632678691	63.772	0.62569	63.772	63.532	64.158	0					48	22	3	0	0	0	0.29118	1	15818	15818		21.537	0	1	394020	+		48227	17486	27649	27650	59020	59020					0.07175451963030355
TISFASLSVPL	11	Unmodified	_TISFASLSVPL_					0	0	0			REV__ENSG00000168890|ENST00000334462|TMEM150A	REV__ENSG00000168890|ENST00000334462|TMEM150A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	567.823889	1133.63323	0.51002	0.0002896	-2.5122	-0.0014265	-2.0022	-0.0011369	567.8224132348001	63.693	0.58043	63.788	63.539	64.119	0.095722	0.00091267	-0.00020441	NaN	21.537	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	466350	+		48228	17486	27649	27650							0.07175451963030355
TISFERIN	8	Unmodified	_TISFERIN_					0	0	0		ENSG00000084674|ENST00000233242|APOB;APOB|p.G3575Afs*48|1|0.18|ENSG00000084674|chr2:21006144-21006144|C/-|frameshift_variant	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.7487487792969	2	490.263999	978.513445	0.015411	7.5554E-06	0.41694	0.00020441	0.43235	0.00021197	490.26471599828784	14.359	0.23699	14.255	14.185	14.422	-0.10466					10	7	2	0	0	0	0.34408	1	723	723		2.3027	0	1	24012			48229	1244	27650	27651	59021	59021					0.02332883409144415
TISLSLIDI	9	Unmodified	_TISLSLIDI_					0	0	0			REV__nc|ENSG00000285467|P0CG22|DHRS4L1	REV__nc|ENSG00000285467|P0CG22|DHRS4L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7915954589844	2	487.792058	973.569563	0.36061	0.0001759	-0.39649	-0.00019341	-0.035887	-1.7505E-05	487.79170186769744	70.369	1.515	70.344	69.855	71.37	-0.024864					139	54	4	0	0	0	0.25989	1	18062	18062		14.838	0	1	2894000	+		48230	23241	27651	27652	59022	59022					0.08172091525955238
TISPPLQPK	9	Unmodified	_TISPPLQPK_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;DHX29|p.K899Ifs*3|1|0.22|ENSG00000067248|chr5:55273372-55273373|-/TA|frameshift_variant;ENST00000504778.5_1_5:54579003-54603452:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7560119628906	2	490.792392	979.570232	-0.017564	-8.6202E-06	-0.33257	-0.00016322	-0.35013	-0.00017184	490.79228029861633	35.537	0.66495	35.623	35.204	35.869	0.08625					33	23	2	0	0	0	0.1939	1	7138	7138		30.637	7.4881	1	209790			48231	863	27652	27653	59023	59023					0.07962930965652504
TISPTPRVS	9	Unmodified	_TISPTPRVS_					0	0	0		ENST00000607455.1_1_10:31607508-31607900:-|nuORF	ENST00000607455.1_1_10:31607508-31607900:-|nuORF	ENST00000607455.1_1_10:31607508-31607900:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2842102050781	2	479.271824	956.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.622	1	57.622	57.122	58.122	0								0	0	0	0.20639	1	13917	13917		20.454	2.3186	1				48232	12310	27653	27654	59024	59024					0.04909169926202139
TISRQMYSKI	10	Unmodified	_TISRQMYSKI_					0	0	0		ENST00000470043.1_1_10:103789281-103789347:-|nuORF	ENST00000470043.1_1_10:103789281-103789347:-|nuORF	ENST00000470043.1_1_10:103789281-103789347:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.2047424316406	3	409.556907	1225.64889	0.15062	6.1688E-05	-4.0627	-0.0016639	-3.9121	-0.0016022	409.889407735354	37.873	0.19009	37.964	37.821	38.011	0.090881					9	6	2	0	0	0	0.31701	1	7817	7817		7.4771	3.0709	1	112810			48233	10862	27654	27655	59025	59025					0.045094152084402594
TISVKKHLI	9	Unmodified	_TISVKKHLI_					0	0	0			REV__ZNF425|p.N155H|1|0.14|ENSG00000204947|chr7:149105408-149105408|T/G|missense_variant	REV__ZNF425|p.N155H|1|0.14|ENSG00000204947|chr7:149105408-149105408|T/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.771484375	2	519.837134	1037.65972	0.42675	0.00022184	0.069935	3.6355E-05	0.49668	0.00025819	519.8368919619026	62.168	0.52977	62.168	61.971	62.501	0					25	19	2	0	0	0	0.20651	1	15359	15359		14.838	0	1	472230	+		48234	23360	27655	27656	59026	59026					0.1423918564505584
TITKIETFF	9	Unmodified	_TITKIETFF_					0	0	0			REV__ENST00000349305.8_1_6:135239555-135263608:-|nuORF	REV__ENST00000349305.8_1_6:135239555-135263608:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.7952270507812	2	550.305332	1098.59611	0.27751	0.00015271	0.078229	4.305E-05	0.35574	0.00019576	550.305276031685	61.784	0.65244	61.784	61.51	62.162	0					41	23	2	0	0	0	0.18803	1	15238	15238		25.399	1.3787	1	525020	+		48235	15016	27656	27657	59027	59027					0.05075780417291753
TITKNVIF	8	Unmodified	_TITKNVIF_					0	0	0			REV__ENSG00000134757|ENST00000257189|DSG3	REV__ENSG00000134757|ENST00000257189|DSG3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.2672119140625	2	468.28166	934.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.477	1	76.477	75.977	76.977	0								0	0	0	0.36748	1	19696	19696		6.7232	0.36906	1		+		48236	15696	27657	27658	59028	59028					0.07887545936944207
TITKNVIF	8	Unmodified	_TITKNVIF_					0	0	0			REV__ENSG00000134757|ENST00000257189|DSG3	REV__ENSG00000134757|ENST00000257189|DSG3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.26702880859375	2	468.28166	934.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.659	1	76.627	76.127	77.127	-0.031487								0	0	0	0.36486	1	19739	19739		7.9102	0.62092	1		+		48237	15696	27657	27658	59029	59029					0.07887545936944207
TITPIVLYF	9	Unmodified	_TITPIVLYF_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.8130493164062	2	533.812793	1065.61103	0.41307	0.0002205	0.2322	0.00012395	0.64527	0.00034446	533.8126402249682	92.796	0.70332	92.796	92.431	93.135	0					112	54	3	0	0	0	0.029841	3	24698	24647;24698;24739		60.39	24.345	1	192350			48238	6601	27658	27659	59030;59031;59032	59031					0.08085272285279643
TITPIVLYF	9	Unmodified	_TITPIVLYF_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.8128051757812	2	533.812793	1065.61103	0.31058	0.00016579	0.50415	0.00026912	0.81473	0.00043491	533.8127696084645	92.704	0.62535	92.793	92.438	93.063	0.089195					105	46	3	0	0	0	0.010938	2	24630	24630;24672		77.984	27.129	1	191000			48239	6601	27658	27659	59033;59034	59033					0.08085272285279643
TITPIVLYF	9	Unmodified	_TITPIVLYF_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.8128662109375	2	533.812793	1065.61103	0.61192	0.00032665	0.29207	0.00015591	0.90399	0.00048256	533.8126732466988	92.747	0.73476	92.747	92.475	93.21	0.00046539					123	59	3	0	0	0	0.029841	2	24660	24660;24747		60.39	24.345	1	219700			48240	6601	27658	27659	59035;59036	59035					0.08085272285279643
TITVGRLDKS	10	Unmodified	_TITVGRLDKS_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3174438476562	2	545.316763	1088.61897	0.75752	0.00041309	-0.53408	-0.00029124	0.22345	0.00012185	545.3162397254592	92.451	1.0722	92.451	91.883	92.955	0.00046539					161	73	3	0	0	0	0.37751	1	24626	24626		7.609	7.609	1	516240			48241	3273	27659	27660	59037	59037					0.07820799534761136
TITVGRLDKS	10	Unmodified	_TITVGRLDKS_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	545.316763	1088.61897	0.3983	0.0002172	-0.06763	-3.688E-05	0.33067	0.00018032	545.3165459479394	92.471	1.2145	92.471	92.056	93.27	0	-0.018256	0.00021663	NaN	7.609	220	97	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431180			48242	3273	27659	27660							0.07820799534761136
TITVGRLDKS	10	Unmodified	_TITVGRLDKS_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	545.316763	1088.61897	0.58034	0.00031647	-0.34984	-0.00019077	0.2305	0.00012569	545.3164056315165	92.455	1.3611	92.545	91.842	93.203	0.089203	0.055826	-9.1155E-05	NaN	7.609	207	101	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437820			48243	3273	27659	27660							0.07820799534761136
TITVGRLDKS	10	Unmodified	_TITVGRLDKS_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	545.316763	1088.61897	0.75752	0.00041309	-0.53408	-0.00029124	0.22345	0.00012185	545.3162397254592	92.451	1.0722	92.451	91.883	92.955	0.00046539	-0.03757	-0.00029209	NaN	7.609	161	73	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	516240			48244	3273	27659	27660							0.07820799534761136
TITVRTKKD	9	Unmodified	_TITVRTKKD_					0	0	0		CON__Q2UVX4	CON__Q2UVX4	CON__Q2UVX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.31884765625	2	531.319306	1060.62406	0.71923	0.00038214	-0.84017	-0.0004464	-0.12094	-6.4257E-05	531.3187843393094	84.848	1.1329	84.848	84.555	85.688	0					87	43	3	0	0	0	0.33276	2	22420	22420;22471		3.9444	3.9444	1	1153900		+	48245	228	27660	27661	59038;59039	59038					0.0961710339736328
TIVLTPGGIT	10	Unmodified	_TIVLTPGGIT_					0	0	0			REV__nc|ENSG00000157404|P10721-2|KIT	REV__nc|ENSG00000157404|P10721-2|KIT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.27484130859375	2	486.292225	970.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.608	1	30.636	30.136	31.136	0.027946								0	0	0	0.35216	1	5622	5622		13.906	0	1		+		48246	16783	27661	27662	59040	59040					0.08343511245811897
TIVNRGKP	8	Unmodified	_TIVNRGKP_					0	0	0			REV__HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	REV__HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2490234375	2	442.769252	883.52395	0.20709	9.1694E-05	-0.23313	-0.00010322	-0.026033	-1.1527E-05	442.76906776548986	24.116	0.4534	24.077	23.939	24.392	-0.038927					18	15	2	0	0	0	0.32435	1	3682	3682		16.942	0	1	26231	+		48247	14030	27662	27663	59041	59041					0.07752910854230777
TIVNRGKP	8	Unmodified	_TIVNRGKP_					0	0	0			REV__HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	REV__HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	442.769252	883.52395	0.10385	4.5984E-05	-0.46892	-0.00020763	-0.36507	-0.00016164	442.76902344933114	24.047	0.27681	24.047	23.917	24.194	0	-0.045249	-9.891E-05	NaN	16.942	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33135	+		48248	14030	27662	27663							0.07752910854230777
TIVQNKPK	8	Unmodified	_TIVQNKPK_					0	0	0			REV__ENSG00000125124|ENST00000245157|BBS2	REV__ENSG00000125124|ENST00000245157|BBS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.7745056152344	2	464.284734	926.554916	-0.058154	-2.7E-05	0.63513	0.00029488	0.57697	0.00026788	464.28506719111505	40.083	0.39677	40.083	39.886	40.283	0					22	13	2	0	0	0	0.33245	1	8487	8487		13.508	0	1	224150	+		48249	15256	27663	27664	59042	59042					0.08870064168468161
TIVRGNKP	8	Unmodified	_TIVRGNKP_					0	0	0		ENSG00000101349|ENST00000353224|PAK5	ENSG00000101349|ENST00000353224|PAK5	ENSG00000101349|ENST00000353224|PAK5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.25042724609375	2	442.769252	883.52395	0.12185	5.3952E-05	-0.65007	-0.00028783	-0.52822	-0.00023388	442.7690355478905	24.226	0.29887	24.153	23.935	24.234	-0.072559					14	9	2	0	0	0	0.34131	1	3690	3690		12.532	0	1	24280			48250	1689	27664	27665	59043	59043					0.07752910854230777
TIVRTPVIV	9	Unmodified	_TIVRTPVIV_					0	0	0			REV__nc|ENSG00000147650|Q9Y561-2|LRP12	REV__nc|ENSG00000147650|Q9Y561-2|LRP12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.3115539550781	2	499.32386	996.633166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.896	1	44.971	44.471	45.471	0.075047								0	0	0	0.24522	1	9980	9980		7.9102	2.6795	1		+		48251	16399	27665	27666	59044	59044					0.1347149675370929
TIVVFLTAAI	10	Unmodified	_TIVVFLTAAI_					0	0	0			REV__nc|ENSG00000124493|Q14833-3|GRM4	REV__nc|ENSG00000124493|Q14833-3|GRM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3079223632812	2	524.326068	1046.63758	0.64946	0.00034053	-0.94341	-0.00049466	-0.29395	-0.00015413	524.3254442097111	66.059	0.63014	66.142	65.942	66.572	0.083832					55	22	3	0	0	0	0.31867	1	16596	16596		18.146	2.2992	1	1059300	+		48252	15236	27666	27667	59045	59045					0.116129611766155
TIVVKQQSRWF	11	Unmodified	_TIVVKQQSRWF_					0	0	0			REV__ENSG00000165168|ENST00000378588|CYBB	REV__ENSG00000165168|ENST00000378588|CYBB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.27630615234375	3	464.597983	1390.77212	0.46689	0.00021692	-0.42221	-0.00019616	0.04468	2.0758E-05	464.5978994458766	50.007	0.50745	50.028	49.802	50.309	0.020691					30	18	2	0	0	0	0.33263	1	11495	11495		3.8459	2.5163	1	305020	+		48253	17212	27667	27668	59046	59046					0.09236414651218183
TIWNLWTWTK	10	Unmodified	_TIWNLWTWTK_					0	0	0			REV__ENST00000555815.5_1_15:25924490-25961922:-|nuORF	REV__ENST00000555815.5_1_15:25924490-25961922:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2688903808594	3	450.239796	1347.69756	0.29793	0.00013414	-3.5627	-0.0016041	-3.2647	-0.0014699	450.2384280622563	35.95	0.29734	36.032	35.874	36.171	0.082359					15	10	2	0	0	0	0.31746	1	7293	7293		3.5871	0	1	199830	+		48254	19016	27668	27669	59047	59047					0.03761651839818114
TIYENEGFRP	10	Unmodified	_TIYENEGFRP_					0	0	0		ENSG00000107957|ENST00000369774|SH3PXD2A;nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A;nc|ENSG00000107957|Q5TCZ1-3|SH3PXD2A	ENSG00000107957|ENST00000369774|SH3PXD2A	ENSG00000107957|ENST00000369774|SH3PXD2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.850341796875	2	613.296027	1224.5775	0.21639	0.00013271	-0.36221	-0.00022214	-0.14582	-8.9432E-05	613.2959036559475	33.052	0.69415	33.107	32.891	33.585	0.055309					35	24	2	0	0	0	0.32009	1	6472	6472		3.9444	0	1	178640			48255	2157	27669	27670	59048	59048					-0.02580381224561279
TIYKPQTF	8	Unmodified	_TIYKPQTF_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2615661621094	2	499.271293	996.528032	0.59777	0.00029845	0.36189	0.00018068	0.95966	0.00047913	499.27134283071695	48.226	0.79018	48.226	47.959	48.749	0					62	27	3	0	0	0	0.25425	1	10987	10987		36.044	9.1605	1	2421200	+		48256	18625	27670	27671	59049	59049					0.02962955557291025
TIYKPQTF	8	Unmodified	_TIYKPQTF_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2883605957031	2	499.271293	996.528032	0.75777	0.00037833	0.74928	0.0003741	1.5071	0.00075243	499.2713194367433	48.179	0.72408	48.226	47.968	48.693	0.04752					89	26	5	0	0	0	0.13961	1	10955	10955		53.576	13.618	1	2412800	+		48257	18625	27670	27671	59050	59050					0.02962955557291025
TIYRLCKGM	9	Unmodified	_TIYRLCKGM_					0	0	0			REV__ENST00000440353.5_1_2:38177721-38224681:+|nuORF	REV__ENST00000440353.5_1_2:38177721-38224681:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.78564453125	2	542.78573	1083.55691	0.34053	0.00018484	-0.50759	-0.00027551	-0.16706	-9.0677E-05	542.785220874352	16.732	0.36161	16.618	16.362	16.723	-0.11434					23	12	3	0	0	0	0.31038	1	1427	1427		7.2892	1.5574	1	66941	+		48258	21043	27671	27672	59051	59051					0.01847033590411229
TIYSWPYF	8	Unmodified	_TIYSWPYF_					0	0	0			REV__ENST00000260129.5_1_8:56737312-56737378:+|nuORF	REV__ENST00000260129.5_1_8:56737312-56737378:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8634643554688	2	538.758018	1075.50148	0.22624	0.00012189	1.2231	0.00065896	1.4493	0.00078085	538.7585759739761	80.606	1.4331	80.671	80.213	81.646	0.065094					103	64	2	0	0	0	0.34218	1	21186	21186		9.3474	1.4373	1	220150	+		48259	19575	27672	27673	59052	59052					-0.03324733334056873
TKAIRARK	8	Unmodified	_TKAIRARK_					0	0	0			REV__L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|3|1|sense	REV__L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|3|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.29498291015625	2	472.311618	942.608683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.775	1	60.766	60.266	61.266	-0.0094566								0	0	0	0.35663	1	14878	14878		11.64	3.047	1		+		48260	22827	27673	27674	59053	59053					0.13508281390841148
TKALQQMR	8	Unmodified	_TKALQQMR_					0	0	0			REV__nc|ENSG00000126602|Q12931-2|TRAP1	REV__nc|ENSG00000126602|Q12931-2|TRAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.25885009765625	2	488.273844	974.533135	0.15811	7.72E-05	0.52044	0.00025412	0.67855	0.00033132	488.27407657530364	16.318	0.83195	16.318	15.947	16.779	0					67	28	3	0	0	0	0.4419	1	1426	1426		8.5933	0	1	370490	+		48261	15317	27674	27675	59054	59054					0.04484936148253382
TKALQQMR	8	Unmodified	_TKALQQMR_					0	0	0			REV__nc|ENSG00000126602|Q12931-2|TRAP1	REV__nc|ENSG00000126602|Q12931-2|TRAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2589111328125	2	488.273844	974.533135	0.24401	0.00011915	0.5283	0.00025796	0.77232	0.0003771	488.2740859099105	16.376	0.91566	16.314	15.892	16.808	-0.062532					72	31	3	0	0	0	0.4419	1	1448	1448		8.5933	0	1	397620	+		48262	15317	27674	27675	59055	59055					0.04484936148253382
TKASTAHGRRA	11	Unmodified	_TKASTAHGRRA_					0	0	0		FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3222045898438	2	578.320703	1154.62685	0.38905	0.00022499	0.414	0.00023942	0.80304	0.00046442	578.320734328455	82.219	2.6522	82.219	81.302	83.954	0					240	103	3	0	0	0	0.40332	5	21283	21283;21339;21435;21696;21741		10.8	5.2147	1	835630			48263	12345	27675	27676	59056;59057;59058;59059;59060	59056					0.05572371574908175
TKASTAHGRRA	11	Unmodified	_TKASTAHGRRA_					0	0	0		FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.82177734375	2	578.320703	1154.62685	0.082223	4.7551E-05	-0.79599	-0.00046034	-0.71376	-0.00041279	578.3201377193335	80.727	0.88293	80.793	80.575	81.457	0.065102					65	41	2	0	0	0	0.44828	1	20973	20973		4.897	0.56777	1	131550			48264	12345	27675	27676	59061	59061					0.05572371574908175
TKASTAHGRRA	11	Unmodified	_TKASTAHGRRA_					0	0	0		FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.32080078125	2	578.320703	1154.62685	0.31024	0.00017942	0.41252	0.00023857	0.72276	0.00041799	578.3207372612743	82.173	2.3333	82.242	81.461	83.795	0.068985					204	95	3	0	0	0	0.40332	2	21236	21236;21299		10.8	3.6978	1	1075100			48265	12345	27675	27676	59062;59063	59062					0.05572371574908175
TKASTAHGRRA	11	Unmodified	_TKASTAHGRRA_					0	0	0		FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3214721679688	2	578.320703	1154.62685	0.38603	0.00022325	0.4927	0.00028494	0.87872	0.00050818	578.3207795532456	82.408	2.4147	82.387	81.478	83.892	-0.020584					239	99	3	0	0	0	0.42346	2	21450	21450;21737		8.1555	2.4237	1	1098200			48266	12345	27675	27676	59064;59065	59064					0.05572371574908175
TKASTAHGRRA	11	Unmodified	_TKASTAHGRRA_					0	0	0		FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	578.320703	1154.62685	0.27179	0.00015718	-0.37545	-0.00021713	-0.10366	-5.995E-05	578.3200546266141	81.173	0.48278	81.149	80.991	81.474	-0.024513	0.17806	0.00036774	NaN	4.897	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193290			48267	12345	27675	27676							0.05572371574908175
TKAWMETEDTL	11	Unmodified	_TKAWMETEDTL_					0	0	0		nc|ENSG00000165828|Q96NZ9-4|PRAP1;ENSG00000165828|ENST00000433452|PRAP1;nc|ENSG00000165828|Q96NZ9-3|PRAP1	nc|ENSG00000165828|Q96NZ9-4|PRAP1	nc|ENSG00000165828|Q96NZ9-4|PRAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7874450683594	3	442.207832	1323.60167	0.51002	0.00022553	3.9208	0.0017338	4.4308	0.0019593	442.21001233509065	33.783	0.53631	33.783	33.512	34.048	0					34	19	2	0	0	0	0.33146	1	6526	6526		2.2527	0	1	92348			48268	6005	27676	27677	59066	59066					-0.04718908853214998
TKAWMETEDTL	11	Unmodified	_TKAWMETEDTL_					0	0	0		nc|ENSG00000165828|Q96NZ9-4|PRAP1;ENSG00000165828|ENST00000433452|PRAP1;nc|ENSG00000165828|Q96NZ9-3|PRAP1	nc|ENSG00000165828|Q96NZ9-4|PRAP1	nc|ENSG00000165828|Q96NZ9-4|PRAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7875671386719	3	442.207832	1323.60167	0.047243	2.0891E-05	3.815	0.001687	3.8622	0.0017079	442.5429407119531	33.594	0.77398	33.661	33.105	33.879	0.066704					33	27	2	0	0	0	0.3325	1	6478	6478		0.32927	0	1	117950			48269	6005	27676	27677	59067	59067					-0.04718908853214998
TKDEVLYVF	9	Unmodified	_TKDEVLYVF_					0	0	0		nc|ENSG00000138760|Q14108-2|SCARB2;ENSG00000138760|ENST00000264896|SCARB2	nc|ENSG00000138760|Q14108-2|SCARB2	nc|ENSG00000138760|Q14108-2|SCARB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2946166992188	2	557.294965	1112.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.48	1	100.48	99.975	100.98	0								0	0	0	0.22666	1	26847	26847		13.906	3.8321	1				48270	4189	27677	27678	59068	59068					0.02359190037600456
TKDSEMCKF	9	Unmodified	_TKDSEMCKF_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2933959960938	2	544.741185	1087.46782	0.41003	0.00022336	0.31498	0.00017158	0.72501	0.00039494	544.7410971629273	27.382	0.82352	27.37	26.928	27.752	-0.01156					42	28	2	0	0	0	0.26168	1	4582	4582		1.8442	0	1	244910			48271	7361	27678	27679	59069	59069					-0.07241846159763554
TKDSIDKAF	9	Unmodified	_TKDSIDKAF_					0	0	0			REV__L1MC1_dup4818|chr5:157018062-157020331:+|1.2048631609900489|0.0442921674053822|4.77|515.0|75|3|sense	REV__L1MC1_dup4818|chr5:157018062-157020331:+|1.2048631609900489|0.0442921674053822|4.77|515.0|75|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2498168945312	2	512.769114	1023.52368	0.043213	2.2158E-05	1.5645	0.00080222	1.6077	0.00082438	512.7698728761462	15.272	0.42537	15.162	14.982	15.408	-0.10981					23	14	2	0	0	0	0.25706	1	962	962		6.7232	0.96273	1	101860	+		48272	22789	27679	27680	59070	59070					0.012854463437065533
TKEKEYREKQR	11	Unmodified	_TKEKEYREKQR_					0	0	0			REV__UPF3B|p.P455Lfs*3|1|0.09|ENSG00000125351|chrX:119834968-119834969|-/CAAA|frameshift_variant	REV__UPF3B|p.P455Lfs*3|1|0.09|ENSG00000125351|chrX:119834968-119834969|-/CAAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2394104003906	3	498.938956	1493.79504	0.1744	8.7014E-05	0.0076426	3.8132E-06	0.18204	9.0827E-05	499.2731586870152	15.889	0.6601	15.827	15.575	16.235	-0.062533					49	22	3	0	0	0	0.33348	1	1265	1265		0.40827	0	1	123420	+		48273	15259	27680	27681	59071	59071					0.06789388978017996
TKEKEYREKQR	11	Unmodified	_TKEKEYREKQR_					0	0	0			REV__UPF3B|p.P455Lfs*3|1|0.09|ENSG00000125351|chrX:119834968-119834969|-/CAAA|frameshift_variant	REV__UPF3B|p.P455Lfs*3|1|0.09|ENSG00000125351|chrX:119834968-119834969|-/CAAA|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	498.938956	1493.79504	0.17692	8.8273E-05	0.034087	1.7007E-05	0.21101	0.00010528	498.9388995734732	15.855	0.76944	15.855	15.498	16.267	0	0.0052604	3.8655E-05	NaN	1.1098	58	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147590	+		48274	15259	27680	27681							0.06789388978017996
TKEKEYREKQR	11	Unmodified	_TKEKEYREKQR_					0	0	0			REV__UPF3B|p.P455Lfs*3|1|0.09|ENSG00000125351|chrX:119834968-119834969|-/CAAA|frameshift_variant	REV__UPF3B|p.P455Lfs*3|1|0.09|ENSG00000125351|chrX:119834968-119834969|-/CAAA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	498.938956	1493.79504	0.16296	8.1308E-05	-0.030852	-1.5393E-05	0.13211	6.5915E-05	498.9389367045487	15.981	0.64676	15.867	15.544	16.191	-0.11434	0.017187	-5.8546E-05	NaN	1.1098	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125760	+		48275	15259	27680	27681							0.06789388978017996
TKERRRFA	8	Unmodified	_TKERRRFA_					0	0	0			REV__ENST00000392650.7_1_17:71334510-71334729:-|nuORF	REV__ENST00000392650.7_1_17:71334510-71334729:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3109741210938	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.4	1	113.39	112.89	113.89	-0.017303								0	0	0	0.37724	1	29480	29480		2.3027	0	1		+		48276	20594	27681	27682	59072	59072					0.07586191897121353
TKERRRFA	8	Unmodified	_TKERRRFA_					0	0	0			REV__ENST00000392650.7_1_17:71334510-71334729:-|nuORF	REV__ENST00000392650.7_1_17:71334510-71334729:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3110961914062	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.92	1	118.89	118.39	119.39	-0.024147								0	0	0	0.37724	1	30719	30719		2.3027	0	1		+		48277	20594	27681	27682	59073	59073					0.07586191897121353
TKERRRFA	8	Unmodified	_TKERRRFA_					0	0	0			REV__ENST00000392650.7_1_17:71334510-71334729:-|nuORF	REV__ENST00000392650.7_1_17:71334510-71334729:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3117065429688	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.23	1	119.21	118.71	119.71	-0.024147								0	0	0	0.37724	1	30785	30785		2.3027	0	1		+		48278	20594	27681	27682	59074	59074					0.07586191897121353
TKERRRFA	8	Unmodified	_TKERRRFA_					0	0	0			REV__ENST00000392650.7_1_17:71334510-71334729:-|nuORF	REV__ENST00000392650.7_1_17:71334510-71334729:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.311767578125	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114	1	114.02	113.52	114.52	0.016708								0	0	0	0.37724	1	29653	29653		2.3027	0	1		+		48279	20594	27681	27682	59075	59075					0.07586191897121353
TKERRRFA	8	Unmodified	_TKERRRFA_					0	0	0			REV__ENST00000392650.7_1_17:71334510-71334729:-|nuORF	REV__ENST00000392650.7_1_17:71334510-71334729:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3117065429688	2	532.309606	1062.60466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.75	1	114.77	114.27	115.27	0.016708								0	0	0	0.37724	1	29835	29835		2.3027	0	1		+		48280	20594	27681	27682	59076	59076					0.07586191897121353
TKERSELSK	9	Unmodified	_TKERSELSK_					0	0	0		ENST00000492803.1_1_13:73372062-73409389:+|nuORF;ENSG00000083535|ENST00000326291|PIBF1	ENST00000492803.1_1_13:73372062-73409389:+|nuORF	ENST00000492803.1_1_13:73372062-73409389:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7817993164062	2	539.29857	1076.58259	0.70254	0.00037888	1.5419	0.00083152	2.2444	0.0012104	539.2995421530059	50.333	1.065	50.333	49.701	50.766	0					89	38	3	0	0	0	0.17696	1	11680	11680		36.506	8.8774	1	835380			48281	1223	27682	27683	59077	59077					0.04735922638019474
TKERSELSK	9	Unmodified	_TKERSELSK_					0	0	0		ENST00000492803.1_1_13:73372062-73409389:+|nuORF;ENSG00000083535|ENST00000326291|PIBF1	ENST00000492803.1_1_13:73372062-73409389:+|nuORF	ENST00000492803.1_1_13:73372062-73409389:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7819213867188	2	539.29857	1076.58259	0.94479	0.00050953	1.2572	0.000678	2.202	0.0011875	539.2994543081696	50.251	1.177	50.296	49.669	50.846	0.044891					79	43	3	0	0	0	0.1645	1	11682	11682		33.445	10.787	1	748580			48282	1223	27682	27683	59078	59078					0.04735922638019474
TKERSELSK	9	Unmodified	_TKERSELSK_					0	0	0		ENST00000492803.1_1_13:73372062-73409389:+|nuORF;ENSG00000083535|ENST00000326291|PIBF1	ENST00000492803.1_1_13:73372062-73409389:+|nuORF	ENST00000492803.1_1_13:73372062-73409389:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.78173828125	2	539.29857	1076.58259	0.98749	0.00053255	1.2757	0.00068801	2.2632	0.0012206	539.2996403441913	50.299	1.2813	50.32	49.591	50.872	0.020691					105	47	3	0	0	0	0.12056	1	11675	11675		43.982	20.192	1	806170			48283	1223	27682	27683	59079	59079					0.04735922638019474
TKFPFSKH	8	Unmodified	_TKFPFSKH_					0	0	0		ENST00000268058.7_1_15:74337464-74337578:+|nuORF	ENST00000268058.7_1_15:74337464-74337578:+|nuORF	ENST00000268058.7_1_15:74337464-74337578:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7850646972656	2	496.271627	990.528701	0.32337	0.00016048	1.1079	0.00054984	1.4313	0.00071032	496.27188620262535	45.786	0.82006	45.846	45.389	46.209	0.059837					64	28	3	0	0	0	0.32886	1	10177	10177		10.824	0	1	998360			48284	9063	27683	27684	59080	59080					0.03305794996992972
TKFPFSKH	8	Unmodified	_TKFPFSKH_					0	0	0		ENST00000268058.7_1_15:74337464-74337578:+|nuORF	ENST00000268058.7_1_15:74337464-74337578:+|nuORF	ENST00000268058.7_1_15:74337464-74337578:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7850036621094	2	496.271627	990.528701	0.54321	0.00026958	0.16529	8.2031E-05	0.70851	0.00035161	496.2715965026474	45.796	0.86923	45.861	45.384	46.253	0.065048					61	31	4	0	0	0	0.34039	1	10171	10171		10.824	2.2306	1	801830			48285	9063	27683	27684	59081	59081					0.03305794996992972
TKHKPQLF	8	Unmodified	_TKHKPQLF_					0	0	0			REV__ENSG00000099219|ENST00000339450|ERMP1	REV__ENSG00000099219|ENST00000339450|ERMP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.79254150390625	2	499.792727	997.5709	0.60066	0.0003002	-0.43905	-0.00021943	0.16161	8.0771E-05	499.79256309329145	55.166	0.46508	55.166	54.837	55.302	0					28	16	2	0	0	0	0.17761	1	13140	13140		46.921	6.4723	1	669730	+		48286	14124	27684	27685	59082	59082					0.07201770405356456
TKHKPQLF	8	Unmodified	_TKHKPQLF_					0	0	0			REV__ENSG00000099219|ENST00000339450|ERMP1	REV__ENSG00000099219|ENST00000339450|ERMP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7927551269531	2	499.792727	997.5709	0.63996	0.00031985	-0.38273	-0.00019128	0.25724	0.00012857	499.79251601931253	55.055	0.42661	55.118	54.863	55.29	0.063202					25	15	2	0	0	0	0.17761	1	13117	13117		46.921	6.4723	1	662750	+		48287	14124	27684	27685	59083	59083					0.07201770405356456
TKHTDLPVSVF	11	Unmodified	_TKHTDLPVSVF_					0	0	0		ENSG00000168090|ENST00000303904|COPS6;ENST00000468499.5_1_7:99687333-99688626:+|nuORF	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3390502929688	2	622.337695	1242.66084	-0.11978	-7.4546E-05	3.9431	0.0024539	3.8233	0.0023794	622.340107747553	76.435	0.32071	76.488	76.345	76.665	0.053421					18	11	2	0	0	0	0.44351	1	19702	19702		6.6304	2.1015	1	91256			48288	6246	27685	27686	59084	59084					0.0492135522326862
TKHTDLPVSVF	11	Unmodified	_TKHTDLPVSVF_					0	0	0		ENSG00000168090|ENST00000303904|COPS6;ENST00000468499.5_1_7:99687333-99688626:+|nuORF	ENSG00000168090|ENST00000303904|COPS6	ENSG00000168090|ENST00000303904|COPS6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	622.337695	1242.66084	0.32758	0.00020387	3.5803	0.0022282	3.9079	0.0024321	622.3399053238995	76.62	0.36343	76.588	76.346	76.709	-0.031487	0.05007	-0.00014765	NaN	6.6304	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97596			48289	6246	27685	27686							0.0492135522326862
TKIAVLQAHD	10	Unmodified	_TKIAVLQAHD_					0	0	0			REV__ENSG00000185483|ENST00000371079|ROR1	REV__ENSG00000185483|ENST00000371079|ROR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2838134765625	2	548.31148	1094.60841	0.35049	0.00019218	0.14839	8.1361E-05	0.49888	0.00027354	548.3112987661713	22.007	0.39471	22.007	21.795	22.189	0					20	14	2	0	0	0	0.31926	1	3069	3069		5.7319	0.97584	1	105360	+		48290	18383	27686	27687	59085	59085					0.06488816880346349
TKIFQKKKIL	10	Unmodified	_TKIFQKKKIL_					0	0	0		nc|ENSG00000124313|Q5JU85-3|IQSEC2;ENSG00000124313|ENST00000642864|IQSEC2	nc|ENSG00000124313|Q5JU85-3|IQSEC2	nc|ENSG00000124313|Q5JU85-3|IQSEC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.91650390625	2	623.915916	1245.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.22	1	104.22	103.72	104.72	0.0011444								0	0	0	0.38201	1	27704	27704		0.45834	0	1				48291	3153	27687	27688	59086	59086					0.2042026518442981
TKISEAPFL	9	Unmodified	_TKISEAPFL_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.27398681640625	2	503.2844	1004.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.134	1	75.187	74.687	75.687	0.052361								0	0	0	0.21357	1	19281	19281		18.135	4.2289	1				48292	2160	27688	27689	59087	59087					0.0521522472874949
TKKDPSRQA	9	Unmodified	_TKKDPSRQA_					0	0	0			REV__nc|ENSG00000101346|Q9H488-2|POFUT1	REV__nc|ENSG00000101346|Q9H488-2|POFUT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7981567382812	2	515.78563	1029.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.88	1	12.88	12.38	13.38	0								0	0	0	0.22666	1	258	258		13.906	0	1		+		48293	14264	27689	27690	59088	59088					0.04311073186431713
TKKDPSRQA	9	Unmodified	_TKKDPSRQA_					0	0	0			REV__nc|ENSG00000101346|Q9H488-2|POFUT1	REV__nc|ENSG00000101346|Q9H488-2|POFUT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7982177734375	2	515.78563	1029.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.917	1	12.817	12.317	13.317	-0.099291								0	0	0	0.24066	1	271	271		9.3831	0	1		+		48294	14264	27689	27690	59089	59089					0.04311073186431713
TKKKVFLW	8	Unmodified	_TKKKVFLW_					0	0	0		ENST00000323387.5_10:47380981-47400428:+|nuORF;nc|ENSG00000122376|Q86V20|SHLD2;ENSG00000122376|ENST00000298786|SHLD2	ENST00000323387.5_10:47380981-47400428:+|nuORF	ENST00000323387.5_10:47380981-47400428:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.310302734375	2	525.328945	1048.64334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.837	1	96.832	96.332	97.332	-0.0055466								0	0	0	0.36961	1	25907	25907		5.7604	2.4791	1				48295	3040	27690	27691	59090	59090					0.1209610447895102
TKKLFRALST	10	Unmodified	_TKKLFRALST_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.8594360351562	2	582.858598	1163.70264	0.062545	3.6455E-05	1.9885	0.001159	2.051	0.0011954	582.8595266993444	107.44	0.064728	107.43	107.39	107.46	-0.0085754					24	9	3	0	0	0	0.39009	1	28320	28320		5.2969	2.0156	1	2165800	+		48296	14066	27691	27692	59091	59091					0.1273395570244702
TKKMLYDM	8	Unmodified	_TKKMLYDM_					0	0	0		ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7981567382812	2	515.259013	1028.50347	-0.02177	-1.1217E-05	-0.19859	-0.00010233	-0.22036	-0.00011354	515.2587268135737	12.779	0.38907	12.779	12.669	13.058	0					17	13	2	0	0	0	0.34272	1	258	258		7.9102	4.6288	1	92692			48297	4627	27692	27693	59092	59092					-0.009637639121137909
TKKRREDP	8	Unmodified	_TKKRREDP_					0	0	0			REV__ENST00000517635.2_1_7:27161593-27161650:+|nuORF	REV__ENST00000517635.2_1_7:27161593-27161650:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.8140869140625	2	515.293622	1028.57269	-0.036858	-1.8993E-05	0.51364	0.00026468	0.47678	0.00024568	515.293813803638	12.407	0.17292	12.31	12.236	12.409	-0.096607					7	5	2	0	0	0	0.31088	1	120	120		28.487	10.352	1	29806	+		48298	21855	27693	27694	59093	59093					0.05954779423313994
TKKTLYLR	8	Unmodified	_TKKTLYLR_					0	0	0		ENST00000514881.1_1_4:159199390-159199825:+|nuORF	ENST00000514881.1_1_4:159199390-159199825:+|nuORF	ENST00000514881.1_1_4:159199390-159199825:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.28021240234375	2	511.821484	1021.62842	0.15528	7.9476E-05	0.85535	0.00043779	1.0106	0.00051726	511.8218474938501	21.815	0.4602	21.765	21.604	22.064	-0.049377					24	16	2	0	0	0	0.34437	1	3031	3031		0.69038	0	1	74516			48299	11419	27694	27695	59094	59094					0.11846612610941065
TKKTLYLR	8	Unmodified	_TKKTLYLR_					0	0	0		ENST00000514881.1_1_4:159199390-159199825:+|nuORF	ENST00000514881.1_1_4:159199390-159199825:+|nuORF	ENST00000514881.1_1_4:159199390-159199825:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	511.821484	1021.62842	0.28991	0.00014838	0.96735	0.00049511	1.2573	0.00064349	511.821877703702	21.798	0.56042	21.798	21.573	22.133	0	0.0080836	3.7382E-05	NaN	0.69038	24	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63938			48300	11419	27694	27695							0.11846612610941065
TKKTLYLR	8	Unmodified	_TKKTLYLR_					0	0	0		ENST00000514881.1_1_4:159199390-159199825:+|nuORF	ENST00000514881.1_1_4:159199390-159199825:+|nuORF	ENST00000514881.1_1_4:159199390-159199825:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	511.821484	1021.62842	0.29542	0.0001512	0.95829	0.00049047	1.2537	0.00064168	511.8217239648839	21.907	0.59466	21.806	21.584	22.178	-0.10034	0.016542	2.8109E-05	NaN	0.69038	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63388			48301	11419	27694	27695							0.11846612610941065
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8682250976562	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.12	1	113.12	112.62	113.62	0								0	0	0	0.38166	1	29387	29387		1.4819	0	1				48302	5647	27695	27696	59095	59095					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8685302734375	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.94	1	113.94	113.44	114.44	0								0	0	0	0.38166	1	29579	29579		1.4819	0	1				48303	5647	27695	27696	59096	59096					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8685913085938	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.4	1	115.4	114.9	115.9	0								0	0	0	0.38166	1	29909	29909		1.4819	0	1				48304	5647	27695	27696	59097	59097					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8688354492188	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.2	1	116.2	115.7	116.7	0								0	0	0	0.38166	1	30090	30090		1.4819	0	1				48305	5647	27695	27696	59098	59098					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8685913085938	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.83	1	117.83	117.33	118.33	0								0	0	0	0.38166	1	30458	30458		1.4819	0	1				48306	5647	27695	27696	59099	59099					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8688354492188	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.23	1	118.23	117.73	118.73	0								0	0	0	0.38166	1	30548	30548		1.4819	0	1				48307	5647	27695	27696	59100	59100					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8688354492188	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.81	1	118.81	118.31	119.31	0								0	0	0	0.38166	1	30680	30680		1.4819	0	1				48308	5647	27695	27696	59101	59101					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8693237304688	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.61	1	119.61	119.11	120.11	0								0	0	0	0.38166	1	30856	30856		1.4819	0	1				48309	5647	27695	27696	59102	59102					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8684692382812	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.98	1	119.98	119.48	120.48	0								0	0	0	0.38166	1	30933	30933		1.4819	0	1				48310	5647	27695	27696	59103	59103					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8692016601562	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.56	1	113.54	113.04	114.04	-0.017303								0	0	0	0.38166	1	29516	29516		1.4819	0	1				48311	5647	27695	27696	59104	59104					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8687744140625	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.69	1	113.67	113.17	114.17	-0.017303								0	0	0	0.38166	1	29544	29544		1.4819	0	1				48312	5647	27695	27696	59105	59105					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8694458007812	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.39	1	115.37	114.87	115.87	-0.020988								0	0	0	0.38166	1	29927	29927		1.4819	0	1				48313	5647	27695	27696	59106	59106					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8688354492188	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.46	1	116.43	115.93	116.93	-0.022781								0	0	0	0.38166	1	30170	30170		1.4819	0	1				48314	5647	27695	27696	59107	59107					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.86865234375	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.64	1	116.62	116.12	117.12	-0.022781								0	0	0	0.38166	1	30212	30212		1.4819	0	1				48315	5647	27695	27696	59108	59108					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.869384765625	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.76	1	116.73	116.23	117.23	-0.022781								0	0	0	0.38166	1	30237	30237		1.4819	0	1				48316	5647	27695	27696	59109	59109					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8690185546875	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.11	1	117.08	116.58	117.58	-0.022781								0	0	0	0.38166	1	30321	30321		1.4819	0	1				48317	5647	27695	27696	59110	59110					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8688354492188	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.44	1	117.41	116.91	117.91	-0.024147								0	0	0	0.38166	1	30396	30396		1.4819	0	1				48318	5647	27695	27696	59111	59111					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.868408203125	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.89	1	117.87	117.37	118.37	-0.024147								0	0	0	0.38166	1	30500	30500		1.4819	0	1				48319	5647	27695	27696	59112	59112					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.86865234375	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.18	1	118.15	117.65	118.65	-0.024147								0	0	0	0.38166	1	30559	30559		1.4819	0	1				48320	5647	27695	27696	59113	59113					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.868896484375	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.85	1	118.83	118.33	119.33	-0.024147								0	0	0	0.38166	1	30705	30705		1.4819	0	1				48321	5647	27695	27696	59114	59114					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8692016601562	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.18	1	114.2	113.7	114.7	0.016708								0	0	0	0.38166	1	29699	29699		1.4819	0	1				48322	5647	27695	27696	59115	59115					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.869140625	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.52	1	114.54	114.04	115.04	0.016708								0	0	0	0.38166	1	29780	29780		1.4819	0	1				48323	5647	27695	27696	59116	59116					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8684692382812	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.59	1	115.61	115.11	116.11	0.018738								0	0	0	0.38166	1	30020	30020		1.4819	0	1				48324	5647	27695	27696	59117	59117					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.86865234375	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.63	1	115.65	115.15	116.15	0.018738								0	0	0	0.38166	1	30028	30028		1.4819	0	1				48325	5647	27695	27696	59118	59118					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8684692382812	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.18	1	116.2	115.7	116.7	0.020988								0	0	0	0.38166	1	30150	30150		1.4819	0	1				48326	5647	27695	27696	59119	59119					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.869140625	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.1	1	117.12	116.62	117.62	0.020988								0	0	0	0.38166	1	30366	30366		1.4819	0	1				48327	5647	27695	27696	59120	59120					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8684692382812	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.6	1	117.62	117.12	118.12	0.023476								0	0	0	0.38166	1	30477	30477		1.4819	0	1				48328	5647	27695	27696	59121	59121					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8685913085938	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.19	1	119.21	118.71	119.71	0.026253								0	0	0	0.38166	1	30838	30838		1.4819	0	1				48329	5647	27695	27696	59122	59122					0.11231169001871422
TKLKQKFSMK	10	Unmodified	_TKLKQKFSMK_					0	0	0		nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8684692382812	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.35	1	119.38	118.88	119.88	0.027756								0	0	0	0.38166	1	30873	30873		1.4819	0	1				48330	5647	27695	27696	59123	59123					0.11231169001871422
TKMFTLNIRR	10	Unmodified	_TKMFTLNIRR_					0	0	0		nc|ENSG00000122025|P36888-2|FLT3;ENSG00000122025|ENST00000241453|FLT3	nc|ENSG00000122025|P36888-2|FLT3	nc|ENSG00000122025|P36888-2|FLT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.3687133789062	2	640.368807	1278.72306	0.072947	4.6713E-05	-0.11731	-7.512E-05	-0.044361	-2.8407E-05	640.368748171592	12.331	0.46108	12.263	12.118	12.579	-0.06806					44	15	4	0	0	0	0.41673	1	147	147		0.40072	0	1	266530			48331	3027	27696	27697	59124	59124					0.09484803090595051
TKPEKLPKEAV	11	Unmodified	_TKPEKLPKEAV_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3679809570312	2	620.368995	1238.72344	-0.10716	-6.648E-05	3.1469	0.0019522	3.0397	0.0018858	620.3710005744787	99.08	0.055649	99.131	99.087	99.142	0.050888					8	6	2	0	0	0	0.43149	1	26513	26513		7.1017	3.5052	1	94176	+		48332	14510	27697	27698	59125	59125					0.11362501291455374
TKPEKLPKEAV	11	Unmodified	_TKPEKLPKEAV_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.373046875	2	620.368995	1238.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.8	1	98.794	98.294	99.294	-0.006897								0	0	0	0.36839	1	26472	26472		4.1895	1.691	1		+		48333	14510	27697	27698	59126	59126					0.11362501291455374
TKPEKLPKEAV	11	Unmodified	_TKPEKLPKEAV_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3698120117188	2	620.368995	1238.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.92	1	101.92	101.42	102.42	-0.0033646								0	0	0	0.35514	1	27190	27190		7.1017	2.2047	1		+		48334	14510	27697	27698	59127	59127					0.11362501291455374
TKPEKLPKEAV	11	Unmodified	_TKPEKLPKEAV_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	620.368995	1238.72344	-0.12311	-7.6374E-05	4.6344	0.002875	4.5113	0.0027987	620.3720586912345	98.917	0.050797	98.917	98.904	98.955	0	-0.10704	0.00069157	NaN	7.1017	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47028	+		48335	14510	27697	27698							0.11362501291455374
TKPEKLPKEAV	11	Unmodified	_TKPEKLPKEAV_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	620.368995	1238.72344	-0.10716	-6.648E-05	3.1469	0.0019522	3.0397	0.0018858	620.3710005744787	99.08	0.055649	99.131	99.087	99.142	0.050888	0.10704	-0.001154	NaN	7.1017	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94176	+		48336	14510	27697	27698							0.11362501291455374
TKPFQLYLQK	10	Unmodified	_TKPFQLYLQK_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3695068359375	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.94	1	111.95	111.45	112.45	0.0131								0	0	0	0.38187	1	29140	29140		1.3295	0.13619	1				48337	12572	27698	27699	59128	59128					0.09618822499624002
TKPKSLSRE	9	Unmodified	_TKPKSLSRE_					0	0	0			REV__CDAN1|p.S1036Ffs*15|1|0.1|ENSG00000140326|chr15:42726407-42726408|-/AGAGCACGTCCTGTAA|frameshift_variant	REV__CDAN1|p.S1036Ffs*15|1|0.1|ENSG00000140326|chr15:42726407-42726408|-/AGAGCACGTCCTGTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3035278320312	2	523.303655	1044.59276	0.45849	0.00023993	-0.11285	-5.9054E-05	0.34564	0.00018088	523.3034012000127	81.421	1.2615	81.421	80.707	81.968	0					159	57	5	0	0	0	0.3208	1	21149	21149		5.7319	5.7319	1	1515200	+		48338	13144	27699	27700	59129	59129					0.07224530363282611
TKPKSLSRE	9	Unmodified	_TKPKSLSRE_					0	0	0			REV__CDAN1|p.S1036Ffs*15|1|0.1|ENSG00000140326|chr15:42726407-42726408|-/AGAGCACGTCCTGTAA|frameshift_variant	REV__CDAN1|p.S1036Ffs*15|1|0.1|ENSG00000140326|chr15:42726407-42726408|-/AGAGCACGTCCTGTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3035888671875	2	523.303655	1044.59276	0.46126	0.00024138	-0.47186	-0.00024693	-0.010598	-5.546E-06	523.3032748975928	80.872	0.5611	80.845	80.597	81.158	-0.026825					59	22	3	0	0	0	0.3208	1	21112	21112		5.7319	5.7319	1	1098100	+		48339	13144	27699	27700	59130	59130					0.07224530363282611
TKPKSLSRE	9	Unmodified	_TKPKSLSRE_					0	0	0			REV__CDAN1|p.S1036Ffs*15|1|0.1|ENSG00000140326|chr15:42726407-42726408|-/AGAGCACGTCCTGTAA|frameshift_variant	REV__CDAN1|p.S1036Ffs*15|1|0.1|ENSG00000140326|chr15:42726407-42726408|-/AGAGCACGTCCTGTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3036499023438	2	523.303655	1044.59276	0.46593	0.00024382	-0.18092	-9.4674E-05	0.28502	0.00014915	523.3033997985988	81.478	0.93819	81.454	81.045	81.984	-0.02404					126	40	4	0	0	0	0.3208	1	21156	21156		5.7319	5.7319	1	1908300	+		48340	13144	27699	27700	59131	59131					0.07224530363282611
TKPKSPIQNRV	11	Unmodified	_TKPKSPIQNRV_					0	0	0			REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3783569335938	2	634.377686	1266.74082	-0.064473	-4.09E-05	-0.1445	-9.1668E-05	-0.20897	-0.00013257	634.3780256978243	111.46	1.0181	111.46	111.03	112.05	0					188	138	2	0	0	0	0.47649	1	29001	29001		1.1933	0	1	196170	+		48341	13140	27700	27701	59132	59132					0.11811841617122809
TKPKTSKGTK	10	Unmodified	_TKPKTSKGTK_					0	0	0		nc|ENSG00000154767|Q01831-2|XPC;ENSG00000154767|ENST00000285021|XPC	nc|ENSG00000154767|Q01831-2|XPC	nc|ENSG00000154767|Q01831-2|XPC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.3273315429688	2	538.327131	1074.63971	0.50499	0.00027185	0.099134	5.3366E-05	0.60412	0.00032522	538.3270396138154	90.836	1.2838	90.836	90.369	91.653	0					274	98	4	0	0	0	0.38773	1	24125	24125		5.7319	5.7319	1	4782300			48342	5144	27701	27702	59133	59133					0.10537389914406958
TKPKTSKGTK	10	Unmodified	_TKPKTSKGTK_					0	0	0		nc|ENSG00000154767|Q01831-2|XPC;ENSG00000154767|ENST00000285021|XPC	nc|ENSG00000154767|Q01831-2|XPC	nc|ENSG00000154767|Q01831-2|XPC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.3272705078125	2	538.327131	1074.63971	0.44761	0.00024096	0.15019	8.085E-05	0.5978	0.00032181	538.3270859764355	90.661	1.2454	90.752	90.399	91.645	0.090675					259	98	4	0	0	0	0.40262	1	24168	24168		2.9952	2.9952	1	5557500			48343	5144	27701	27702	59134	59134					0.10537389914406958
TKPKTSKGTK	10	Unmodified	_TKPKTSKGTK_					0	0	0		nc|ENSG00000154767|Q01831-2|XPC;ENSG00000154767|ENST00000285021|XPC	nc|ENSG00000154767|Q01831-2|XPC	nc|ENSG00000154767|Q01831-2|XPC	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	538.327131	1074.63971	0.44761	0.00024096	0.15019	8.085E-05	0.5978	0.00032181	538.3270859764355	90.661	1.2454	90.752	90.399	91.645	0.090675	-0.037217	7.8915E-05	NaN	5.7319	259	98	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5557500			48344	5144	27701	27702							0.10537389914406958
TKPLHLVM	8	Unmodified	_TKPLHLVM_					0	0	0			REV__MLH3|p.Q200H|1|0.17|ENSG00000119684|chr14:75049056-75049056|C/G|missense_variant	REV__MLH3|p.Q200H|1|0.17|ENSG00000119684|chr14:75049056-75049056|C/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.77880859375	2	469.778231	937.541908	0.24521	0.00011519	1.213	0.00056983	1.4582	0.00068503	469.7786477026799	82.797	0.76381	82.797	82.534	83.298	0					64	28	3	0	0	0	0.46022	1	21721	21721		2.3027	2.3027	1	1006300	+		48345	22863	27702	27703	59135	59135					0.07063909784733369
TKPLLPSDLRR	11	Unmodified	_TKPLLPSDLRR_					0	0	0		ENSG00000261609|ENST00000648994|GAN	ENSG00000261609|ENST00000648994|GAN	ENSG00000261609|ENST00000648994|GAN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	648.3931274414062	2	648.393336	1294.77212	0.069693	4.5189E-05	-0.026305	-1.7056E-05	0.043388	2.8132E-05	648.3933653466829	98.863	1.1234	98.863	98.462	99.586	0					315	135	4	0	0	0	0.46704	1	26483	26483		2.7352	0	1	483420			48346	8661	27703	27704	59136	59136					0.13652414651210165
TKPLRHQVVEG	11	Unmodified	_TKPLRHQVVEG_					0	0	0		LTR2B_dup251|chr14:22175030-22175511:+|1.0726955723812264|0.0430675614820755|4.64|518.0|28|3|anti-sense	LTR2B_dup251|chr14:22175030-22175511:+|1.0726955723812264|0.0430675614820755|4.64|518.0|28|3|anti-sense	LTR2B_dup251|chr14:22175030-22175511:+|1.0726955723812264|0.0430675614820755|4.64|518.0|28|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.3615112304688	2	632.362036	1262.70952	0.14013	8.8614E-05	-0.45308	-0.00028651	-0.31295	-0.0001979	632.361863657844	98.222	0.51712	98.284	98.003	98.521	0.061516					111	60	2	0	0	0	0.46971	1	26268	26268		4.5289	2.8762	1	767190			48347	12515	27704	27705	59137	59137					0.08867268583026089
TKPLTMQIN	9	Unmodified	_TKPLTMQIN_					0	0	0			REV__nc|ENSG00000116120|Q9NSD9-2|FARSB	REV__nc|ENSG00000116120|Q9NSD9-2|FARSB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3035888671875	2	523.289159	1044.56377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.64	1	90.64	90.14	91.14	0								0	0	0	0.2505	1	24034	24034		6.2058	0	1		+		48348	14910	27705	27706	59138	59138					0.043266697426361134
TKPQKILDLLD	11	Unmodified	_TKPQKILDLLD_					0	0	0			REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3842163085938	2	642.382103	1282.74965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.378	1	96.374	95.874	96.874	-0.0038147								0	0	0	0.37707	1	25773	25773		2.2828	0.63015	1		+		48349	13936	27706	27707	59139	59139					0.11958770462933899
TKPQSIQR	8	Unmodified	_TKPQSIQR_					0	0	0		nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B	nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2773742675781	2	479.277441	956.540328	0.1868	8.9531E-05	0.095213	4.5634E-05	0.28202	0.00013516	479.27736151521805	74.127	3.7807	74.127	72.586	76.367	0					370	134	4	0	0	0	0.45431	1	19454	19454		4.3292	0	1	4891400			48350	4176	27707	27708	59140	59140					0.060319920203255606
TKPRQPQLNAL	11	Unmodified	_TKPRQPQLNAL_					0	0	0			REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3702392578125	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.75	1	100.75	100.25	101.25	0								0	0	0	0.36685	1	26902	26902		4.5289	3.047	1		+		48351	22657	27708	27709	59141	59141					0.10339555100085818
TKPRQPQLNAL	11	Unmodified	_TKPRQPQLNAL_					0	0	0			REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3690795898438	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.86	1	104.86	104.36	105.36	0.0018463								0	0	0	0.36685	1	27825	27825		4.5289	1.2476	1		+		48352	22657	27708	27709	59142	59142					0.10339555100085818
TKPRQPQLNAL	11	Unmodified	_TKPRQPQLNAL_					0	0	0			REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3685302734375	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.92	1	115.94	115.44	116.44	0.018738								0	0	0	0.37707	1	30095	30095		2.2828	0.80087	1		+		48353	22657	27708	27709	59143	59143					0.10339555100085818
TKPRQQLS	8	Unmodified	_TKPRQQLS_					0	0	0		ENST00000597145.5_1_19:4683234-4684926:-|nuORF	ENST00000597145.5_1_19:4683234-4684926:-|nuORF	ENST00000597145.5_1_19:4683234-4684926:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2774658203125	2	479.277441	956.540328	0.1868	8.9531E-05	0.095213	4.5634E-05	0.28202	0.00013516	479.27736151521805	74.127	3.7807	74.127	72.586	76.367	0					370	134	4	0	0	0	0.44569	1	19495	19495		7.2892	0	1	4891400			48354	12232	27709	27710	59144	59144					0.06031992020314192
TKPRQQLS	8	Unmodified	_TKPRQQLS_					0	0	0		ENST00000597145.5_1_19:4683234-4684926:-|nuORF	ENST00000597145.5_1_19:4683234-4684926:-|nuORF	ENST00000597145.5_1_19:4683234-4684926:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2773742675781	2	479.277441	956.540328	0.63198	0.00030289	-0.49857	-0.00023895	0.13341	6.394E-05	479.27702172579126	77.255	1.8602	77.223	76.537	78.397	-0.031334					136	68	4	0	0	0	0.44569	1	19923	19923		7.2892	0	1	896210			48355	12232	27709	27710	59145	59145					0.06031992020314192
TKPTRTSKV	9	Unmodified	_TKPTRTSKV_					0	0	0		nc|ENSG00000104312|O43353-2|RIPK2;ENST00000522965.1_1_8:90770176-90802641:+|nuORF;ENSG00000104312|ENST00000220751|RIPK2	nc|ENSG00000104312|O43353-2|RIPK2	nc|ENSG00000104312|O43353-2|RIPK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3059387207031	2	509.306198	1016.59784	0.40636	0.00020696	-1.144	-0.00058262	-0.73759	-0.00037566	509.3056668015656	82.86	1.3228	82.933	82.546	83.869	0.073097					117	51	3	0	0	0	0.33508	1	21622	21622		3.5965	0	1	804200			48356	1877	27710	27711	59146	59146					0.09020834225896124
TKPTVFLASIT	11	Unmodified	_TKPTVFLASIT_					0	0	0			REV__ENST00000472031.1_1_17:40118826-40125939:+|nuORF	REV__ENST00000472031.1_1_17:40118826-40125939:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3424682617188	2	589.344989	1176.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.8	1	112.78	112.28	113.28	-0.017303								0	0	0	0.37707	1	29334	29334		2.2828	0.80087	1		+		48357	17802	27711	27712	59147	59147					0.09415427371413898
TKPVCVFW	8	Unmodified	_TKPVCVFW_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000440005.6_2_22:18978366-18979498:+|nuORF;ENST00000438934.5_2_22:18979246-18979498:+|nuORF	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.257080078125	2	490.257131	978.499709	0.25497	0.000125	0.29718	0.00014569	0.55214	0.00027069	490.25670168150214	94.22	1.0404	94.307	93.954	94.995	0.08667					227	85	3	0	0	0	0.45169	2	25162	25162;25206		5.2307	0.47466	1	723940			48358	1042	27712	27713	59148;59149	59148					0.009599343763397883
TKPVCVFW	8	Unmodified	_TKPVCVFW_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000440005.6_2_22:18978366-18979498:+|nuORF;ENST00000438934.5_2_22:18979246-18979498:+|nuORF	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2570495605469	2	490.257131	978.499709	0.42355	0.00020765	0.11854	5.8113E-05	0.54208	0.00026576	490.2565965870175	94.359	1.0543	94.357	94.003	95.057	-0.0020142					205	86	3	0	0	0	0.45169	1	25190	25190		5.2307	0.47466	1	671480			48359	1042	27712	27713	59150	59150					0.009599343763397883
TKQERDLSK	9	Unmodified	_TKQERDLSK_					0	0	0			REV__nc|ENSG00000145526|Q13634-2|CDH18	REV__nc|ENSG00000145526|Q13634-2|CDH18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3047485351562	2	552.80402	1103.59349	0.24938	0.00013786	-0.11346	-6.2719E-05	0.13592	7.5137E-05	552.8039428949754	17.973	0.92448	17.973	17.69	18.614	0					100	31	4	0	0	0	0.34923	1	1954	1954		1.4819	0.51963	1	1184500	+		48360	16292	27713	27714	59151	59151					0.04583325012322348
TKQERDLSK	9	Unmodified	_TKQERDLSK_					0	0	0			REV__nc|ENSG00000145526|Q13634-2|CDH18	REV__nc|ENSG00000145526|Q13634-2|CDH18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3057861328125	2	552.80402	1103.59349	0.1882	0.00010404	0.0013061	7.2202E-07	0.18951	0.00010476	552.8039720362557	18.138	0.863	18.021	17.784	18.647	-0.11739					97	29	5	0	0	0	0.34923	1	1991	1991		1.4819	1.4819	1	1294300	+		48361	16292	27713	27714	59152	59152					0.04583325012322348
TKREMIRK	8	Unmodified	_TKREMIRK_					0	0	0		ENST00000507465.1_1_5:32387797-32388629:-|nuORF	ENST00000507465.1_1_5:32387797-32388629:-|nuORF	ENST00000507465.1_1_5:32387797-32388629:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8170166015625	2	531.316043	1060.61753	0.16212	8.6136E-05	0.29461	0.00015653	0.45673	0.00024267	531.3167844582815	99.135	0.49835	99.186	99.011	99.51	0.050888					92	66	2	0	0	0	0.46022	1	26501	26501		2.3027	0	1	117250			48362	11335	27714	27715	59153	59153					0.089648869650091
TKRGSTTT	8	Unmodified	_TKRGSTTT_					0	0	0		ENST00000227266.9_1_11:88027385-88027433:-|nuORF	ENST00000227266.9_1_11:88027385-88027433:-|nuORF	ENST00000227266.9_1_11:88027385-88027433:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2459411621094	2	426.232699	850.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.747	1	77.747	77.247	78.247	0								0	0	0	0.36336	1	20082	20082		8.5933	4.264	1				48363	8849	27715	27716	59154	59154					0.01963737340940952
TKSKKLSR	8	Unmodified	_TKSKKLSR_					0	0	0		ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75	ENSG00000054219|ENST00000263636|LY75	ENSG00000054219|ENST00000263636|LY75	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.3032531738281	2	474.303458	946.592364	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.12	1	23.12	22.62	23.62	0								0	0	0	0.36336	1	3351	3351		8.5933	0	1				48364	684	27716	27717	59155	59155					0.1169315543409084
TKSLCSSWAM	10	Unmodified	_TKSLCSSWAM_					0	0	0			REV__ENST00000434353.6_1_X:148631062-148631386:+|nuORF	REV__ENST00000434353.6_1_X:148631062-148631386:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.277099609375	2	557.257002	1112.49945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.372	1	75.372	74.872	75.872	0								0	0	0	0.35216	1	19362	19362		13.906	4.5229	1		+		48365	20981	27717	27718	59156	59156					-0.05229853405830909
TKSLCSSWAM	10	Unmodified	_TKSLCSSWAM_					0	0	0			REV__ENST00000434353.6_1_X:148631062-148631386:+|nuORF	REV__ENST00000434353.6_1_X:148631062-148631386:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2767333984375	2	557.257002	1112.49945	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.546	1	75.546	75.046	76.046	0								0	0	0	0.35216	1	19415	19415		13.906	0	1		+		48366	20981	27717	27718	59157	59157					-0.05229853405830909
TKSPPPYLG	9	Unmodified	_TKSPPPYLG_					0	0	0			REV__ENSG00000164484|ENST00000296978|TMEM200A	REV__ENSG00000164484|ENST00000296978|TMEM200A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7500305175781	2	480.263468	958.512382	0.32221	0.00015475	3.8906	0.0018685	4.2129	0.0020233	480.2650984676806	20.027	0.13971	19.911	19.812	19.952	-0.11592					6	4	2	0	0	0	0.26117	1	2403	2403		2.3027	0.24298	1	15620	+		48367	17162	27718	27719	59158	59158					0.03146669040222605
TKSRKRGP	8	Unmodified	_TKSRKRGP_					0	0	0			REV__nc|ENSG00000214193|A4FU49|SH3D21	REV__nc|ENSG00000214193|A4FU49|SH3D21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2856140136719	2	465.2856	928.556647	-0.0083411	-3.881E-06	0.00093249	4.3387E-07	-0.0074086	-3.4471E-06	465.2855740229231	79.761	1.1284	79.761	79.441	80.569	0					136	42	4	0	0	0	0.45942	1	20854	20854		2.5775	0	1	6267400	+		48368	19055	27719	27720	59159	59159					0.08951117977085232
TKSWGLLSL	9	Unmodified	_TKSWGLLSL_					0	0	0			REV__ENST00000469415.1_1_13:113748772-113751170:+|nuORF	REV__ENST00000469415.1_1_13:113748772-113751170:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7922058105469	2	502.792392	1003.57023	0.054792	2.7549E-05	1.2017	0.00060418	1.2564	0.00063173	502.7930382434117	81.525	0.45655	81.594	81.417	81.874	0.068993					33	19	2	0	0	0	0.29176	1	21229	21229		10.074	0	1	336340	+		48369	21338	27720	27721	59160	59160					0.06858930965665877
TKTAKVKAV	9	Unmodified	_TKTAKVKAV_					0	0	0			REV__ENSG00000177303|ENST00000321617|CASKIN2	REV__ENSG00000177303|ENST00000321617|CASKIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.2994079589844	2	473.30821	944.601866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.46	1	101.45	100.95	101.95	-0.0054703								0	0	0	0.25858	1	27084	27084		3.5965	0	1		+		48370	17981	27721	27722	59161	59161					0.1273492371960856
TKTLSQLLKL	10	Unmodified	_TKTLSQLLKL_					0	0	0			REV__ENSG00000180113|ENST00000316081|TDRD6	REV__ENSG00000180113|ENST00000316081|TDRD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3021240234375	2	572.868631	1143.72271	0.51927	0.00029747	-0.50461	-0.00028908	0.014657	8.3966E-06	572.868476526965	37.661	0.31367	37.661	37.532	37.846	0					15	10	2	0	0	0	0.31926	1	7786	7786		5.7319	2.4505	1	129230	+		48371	18103	27722	27723	59162	59162					0.15659706642418314
TKTVRHRAL	9	Unmodified	_TKTVRHRAL_					0	0	0			REV__ENSG00000142178|ENST00000270162|SIK1	REV__ENSG00000142178|ENST00000270162|SIK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.333251953125	2	541.333082	1080.65161	0.40647	0.00022004	0.016587	8.9788E-06	0.42306	0.00022902	541.3331398253063	17.762	0.62358	17.762	17.368	17.991	0					34	20	3	0	0	0	0.33508	1	1725	1725		3.5965	0	1	61213	+		48372	16103	27723	27724	59163	59163					0.11451051448261751
TKVEMDNLDNA	11	Unmodified	_TKVEMDNLDNA_					0	0	0		nc|ENSG00000048649|Q96T23-3|RSF1;nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1	nc|ENSG00000048649|Q96T23-3|RSF1	nc|ENSG00000048649|Q96T23-3|RSF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.2922973632812	2	625.290085	1248.56562	-0.18413	-0.00011513	2.8505	0.0017824	2.6664	0.0016673	625.7942753411241	106.57	0.07016	106.56	106.53	106.6	-0.0060425					20	10	3	0	0	0	0.41288	1	28175	28175		9.544	2.2547	1	578520			48373	643	27724	27725	59164	59164					-0.04872366030053854
TKVFAIFFS	9	Unmodified	_TKVFAIFFS_					0	0	0			REV__nc|ENSG00000111729|Q9UMR7-2|CLEC4A	REV__nc|ENSG00000111729|Q9UMR7-2|CLEC4A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2950439453125	2	530.29731	1058.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.76	1	116.76	116.26	117.26	0								0	0	0	0.26334	1	30214	30214		2.0598	0	1		+		48374	22945	27725	27726	59165	59165					0.053121189710282124
TKVLSLIINIL	11	Unmodified	_TKVLSLIINIL_					0	0	0			REV__ENST00000465643.1_1_7:40132349-40134576:+|nuORF	REV__ENST00000465643.1_1_7:40132349-40134576:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.560546875	3	409.607596	1225.80096	-0.10425	-4.2701E-05	-0.30269	-0.00012398	-0.40694	-0.00016668	409.9419430630868	60.067	0.14482	60.055	59.94	60.085	-0.011486					6	4	2	0	0	0	0.33334	1	14665	14665		1.2148	0	1	266910	+		48375	21276	27726	27727	59166	59166					0.19709139227666128
TKWALCIRTF	10	Unmodified	_TKWALCIRTF_					0	0	0			REV__ENSG00000104613|ENST00000397977|INTS10	REV__ENSG00000104613|ENST00000397977|INTS10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.8797912597656	3	413.561993	1237.66415	0.11577	4.7877E-05	-3.2557	-0.0013464	-3.1399	-0.0012986	413.8946672570147	22.933	0.54732	22.888	22.649	23.197	-0.044867					25	19	2	0	0	0	0.31651	1	3241	3241		11.518	3.5725	1	94745	+		48376	14412	27727	27728	59167	59167					0.05482326796277448
TKWHSFKS	8	Unmodified	_TKWHSFKS_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2;TET2|p.K722*|1|0.04|ENSG00000168769|chr4:105236104-105236105|-/T|frameshift_variant;TET2|p.N312Yfs*18|1|0.14|ENSG00000168769|chr4:105234875-105234876|AA/-|frameshift_variant	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.75445556640625	2	510.766709	1019.51886	-0.14153	-7.2289E-05	-0.23592	-0.0001205	-0.37745	-0.00019279	510.7665745098572	13.382	0.58389	13.315	13.162	13.746	-0.067496					48	20	4	0	0	0	0.42642	1	433	433		13.906	0.39817	1	432580			48377	6298	27728	27729	59168	59168					0.00988606991609231
TKYWELIYE	9	Unmodified	_TKYWELIYE_					0	0	0		ENST00000464192.1_1_3:107047282-107047681:-|nuORF;ENST00000546621.5_1_12:56668606-56679804:-|nuORF;CS|p.D371Afs*5|1|0.09|ENSG00000062485|chr12:56273705-56273706|-/G|frameshift_variant;ENSG00000062485|ENST00000351328|CS	ENST00000464192.1_1_3:107047282-107047681:-|nuORF	ENST00000464192.1_1_3:107047282-107047681:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3470458984375	2	622.813522	1243.61249	0.21796	0.00013575	0.12898	8.0329E-05	0.34693	0.00021608	622.8135850092661	85.627	0.61607	85.711	85.567	86.183	0.084251					36	22	3	0	0	0	0.25706	1	22485	22485		6.7232	0.51738	1	162560			48378	243	27729	27730	59169	59169					0.0004286158336981316
TLAAHQQK	8	Unmodified	_TLAAHQQK_					0	0	0		nc|ENSG00000181355|Q8IZS5-4|OFCC1;nc|ENSG00000181355|Q8IZS5-5|OFCC1;ENST00000460066.5_1_6:9769165-9933129:-|nuORF;nc|ENSG00000181355|Q8IZS5-3|OFCC1;nc|ENSG00000181355|Q8IZS5|OFCC1;nc|ENSG00000181355|Q8IZS5-2|OFCC1	nc|ENSG00000181355|Q8IZS5-4|OFCC1	nc|ENSG00000181355|Q8IZS5-4|OFCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.75091552734375	2	448.751059	895.487565	0.46911	0.00021051	-1.0616	-0.00047638	-0.59245	-0.00026586	448.7507399840261	20.914	0.76844	20.804	20.466	21.234	-0.11003					72	26	4	0	0	0	0.37937	1	2710	2710		21.747	4.8044	1	607670			48379	10721	27730	27731	59170	59170					0.035640339575252256
TLAGPLVNVL	10	Unmodified	_TLAGPLVNVL_					0	0	0			REV__ENSG00000111530|ENST00000545606|CAND1	REV__ENSG00000111530|ENST00000545606|CAND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7308654785156	2	498.808042	995.601532	0.64554	0.000322	-3.9919	-0.0019912	-3.3464	-0.0016692	498.80651660721605	47.737	0.45089	47.78	47.373	47.824	0.043324					23	16	2	0	0	0	0.25875	1	10854	10854		25.399	10.561	1	407090	+		48380	14723	27731	27732	59171	59171					0.10355503999744542
TLALAASLLL	10	Unmodified	_TLALAASLLL_					0	0	0			REV__ENST00000434333.1_1_6:31324722-31324935:-|nuORF	REV__ENST00000434333.1_1_6:31324722-31324935:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.3060607910156	2	493.318243	984.621933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.498	1	70.473	69.973	70.973	-0.024872								0	0	0	0.18461	1	17857	17857		41.84	5.7126	1		+		48381	19145	27732	27733	59172	59172					0.12900674659567812
TLAPHTPLV	9	Unmodified	_TLAPHTPLV_					0	0	0			REV__nc|nan|Q8N9H9-2|C1orf127	REV__nc|nan|Q8N9H9-2|C1orf127	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.27130126953125	2	474.779285	947.544017	0.23423	0.00011121	0.19744	9.3742E-05	0.43167	0.00020495	474.77939642975537	48.888	1.0396	48.888	48.448	49.488	0					69	37	3	0	0	0	0.22596	1	11362	11362		21.747	21.747	1	871610	+		48382	17883	27733	27734	59173	59173					0.06814661794180665
TLAQLQLL	8	Unmodified	_TLAQLQLL_					0	0	0			REV__ENST00000473629.6_1_11:124492979-124496722:+|nuORF	REV__ENST00000473629.6_1_11:124492979-124496722:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2814636230469	2	450.28166	898.548768	0.24729	0.00011135	-0.1594	-7.1776E-05	0.087889	3.9575E-05	450.28148582098623	35.695	1.4667	35.781	35.372	36.839	0.08625					103	52	4	0	0	0	0.32038	1	7128	7128		28.487	0	1	2832700	+		48383	16648	27734	27735	59174	59174					0.09543545936958253
TLAQMYNTV	9	Unmodified	_TLAQMYNTV_					0	0	0		ENST00000518292.1_1_5:67586526-67589028:+|nuORF	ENST00000518292.1_1_5:67586526-67589028:+|nuORF	ENST00000518292.1_1_5:67586526-67589028:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.3245239257812	2	520.757692	1039.50083	0.44327	0.00023084	2.2142	0.0011531	2.6575	0.0013839	520.7589909356742	65.967	0.74725	65.954	65.824	66.572	-0.013588					36	26	2	0	0	0	0.2451	1	16475	16475		10.824	0	1	125440			48384	11443	27735	27736	59175	59175					-0.017338960454253538
TLASGPPWFL	10	Unmodified	_TLASGPPWFL_					0	0	0			REV__ENSG00000100888|ENST00000646647|CHD8	REV__ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.792236328125	2	544.792392	1087.57023	0.066578	3.6271E-05	0.93863	0.00051136	1.0052	0.00054763	544.792269290464	114.22	0.2817	114.22	114.01	114.3	0					52	31	2	0	0	0	0.39745	1	29654	29654		3.9444	1.4459	1	28160	+		48385	14234	27736	27737	59176	59176					0.029949309656331025
TLASGPPWFL	10	Unmodified	_TLASGPPWFL_					0	0	0			REV__ENSG00000100888|ENST00000646647|CHD8	REV__ENSG00000100888|ENST00000646647|CHD8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7921142578125	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.79	1	112.79	112.29	113.29	0								0	0	0	0.37581	1	29304	29304		3.9444	1.6417	1		+		48386	14234	27736	27737	59177	59177					0.029949309656331025
TLASGPPWFL	10	Unmodified	_TLASGPPWFL_					0	0	0			REV__ENSG00000100888|ENST00000646647|CHD8	REV__ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7919921875	2	544.792392	1087.57023	0.38225	0.00020824	0.88059	0.00047974	1.2628	0.00068798	545.2951960347643	113.16	1.0616	113.14	113	114.06	-0.017303					179	131	2	0	0	0	0.39745	1	29447	29447		3.9444	1.8846	1	40322	+		48387	14234	27736	27737	59178	59178					0.029949309656331025
TLASGPPWFL	10	Unmodified	_TLASGPPWFL_					0	0	0			REV__ENSG00000100888|ENST00000646647|CHD8	REV__ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7924194335938	2	544.792392	1087.57023	0.38201	0.00020811	0.72685	0.00039598	1.1089	0.0006041	544.7919566272021	115.34	0.54887	115.32	114.93	115.48	-0.020988					103	67	2	0	0	0	0.39745	1	29884	29884		3.9444	0.94915	1	28493	+		48388	14234	27736	27737	59179	59179					0.029949309656331025
TLASGPPWFL	10	Unmodified	_TLASGPPWFL_					0	0	0			REV__ENSG00000100888|ENST00000646647|CHD8	REV__ENSG00000100888|ENST00000646647|CHD8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.793212890625	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113	1	112.99	112.49	113.49	-0.017303								0	0	0	0.37581	1	29382	29382		3.9444	1.4459	1		+		48389	14234	27736	27737	59180	59180					0.029949309656331025
TLASGPPWFL	10	Unmodified	_TLASGPPWFL_					0	0	0			REV__ENSG00000100888|ENST00000646647|CHD8	REV__ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7923583984375	2	544.792392	1087.57023	0.55378	0.0003017	0.8864	0.0004829	1.4402	0.0007846	545.2951546519955	113.95	0.22882	113.96	113.84	114.07	0.016701					39	27	2	0	0	0	0.39745	1	29622	29622		3.9444	1.8846	1	49258	+		48390	14234	27736	27737	59181	59181					0.029949309656331025
TLASGPPWFL	10	Unmodified	_TLASGPPWFL_					0	0	0			REV__ENSG00000100888|ENST00000646647|CHD8	REV__ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7919311523438	2	544.792392	1087.57023	0.55554	0.00030265	1.3217	0.00072006	1.8772	0.0010227	545.2950066741154	116.22	0.49061	116.24	116.15	116.64	0.020996					88	60	2	0	0	0	0.39745	1	30173	30173		3.9444	0.66309	1	116490	+		48391	14234	27736	27737	59182	59182					0.029949309656331025
TLASGPPWFL	10	Unmodified	_TLASGPPWFL_					0	0	0			REV__ENSG00000100888|ENST00000646647|CHD8	REV__ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7918090820312	2	544.792392	1087.57023	0.55338	0.00030148	0.53342	0.00029061	1.0868	0.00059208	544.7917938716707	117.51	0.78748	117.53	117.33	118.12	0.023476					134	97	2	0	0	0	0.39745	1	30449	30449		3.9444	1.2092	1	22069	+		48392	14234	27736	27737	59183	59183					0.029949309656331025
TLATEAPGLI	10	Unmodified	_TLATEAPGLI_					0	0	0		nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1;ENSG00000188021|ENST00000338222|UBQLN2;nc|ENSG00000135018|Q9UMX0-3|UBQLN1	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	nc|ENSG00000135018|Q9UMX0-2|UBQLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7634582519531	2	493.281857	984.549162	0.47048	0.00023208	0.28148	0.00013885	0.75197	0.00037093	493.28168355722147	66.65	0.8741	66.65	66.035	66.909	0					36	30	2	0	0	0	0.31165	1	16587	16587		10.824	0	1	107350			48393	3838	27737	27738	59184	59184					0.056269208661547054
TLAVAAEPR	9	Unmodified	_TLAVAAEPR_					0	0	0			REV__ENST00000367868.3_1_1:167059553-167059736:-|nuORF	REV__ENST00000367868.3_1_1:167059553-167059736:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.7823181152344	2	464.266542	926.51853	0.35935	0.00016683	-0.32793	-0.00015225	0.031418	1.4586E-05	464.266151790698	44.909	0.74804	44.984	44.723	45.471	0.075047					42	27	2	0	0	0	0.079066	1	9944	9944		42.095	2.1449	1	601990	+		48394	20323	27738	27739	59185	59185					0.05233187271744555
TLAVTFLTAI	10	Unmodified	_TLAVTFLTAI_					0	0	0			REV__ENSG00000187080|ENST00000366480|OR2AK2	REV__ENSG00000187080|ENST00000366480|OR2AK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2973022460938	2	525.3157	1048.61685	0.41913	0.00022017	-0.041887	-2.2004E-05	0.37724	0.00019817	525.3156561614667	67.015	0.53509	67.099	66.852	67.387	0.083832					31	18	2	0	0	0	0.2811	2	16876	16876;16883		22.736	3.4793	1	294450	+		48395	18486	27739	27740	59186;59187	59186					0.09448370796917516
TLAVTFLTAI	10	Unmodified	_TLAVTFLTAI_					0	0	0			REV__ENSG00000187080|ENST00000366480|OR2AK2	REV__ENSG00000187080|ENST00000366480|OR2AK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.29736328125	2	525.3157	1048.61685	0.3278	0.0001722	-0.0063231	-3.3216E-06	0.32147	0.00016887	525.3156028253898	67.182	0.47269	67.166	66.921	67.393	-0.016296					26	15	2	0	0	0	0.31867	1	16899	16899		18.146	0	1	357090	+		48396	18486	27739	27740	59188	59188					0.09448370796917516
TLAVTFLTAI	10	Unmodified	_TLAVTFLTAI_					0	0	0			REV__ENSG00000187080|ENST00000366480|OR2AK2	REV__ENSG00000187080|ENST00000366480|OR2AK2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	525.3157	1048.61685	0.47207	0.00024798	-0.18714	-9.831E-05	0.28492	0.00014967	525.315669307674	67.15	0.45903	67.15	66.909	67.368	0	0.011592	-0.00010794	NaN	22.736	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252280	+		48397	18486	27739	27740							0.09448370796917516
TLAVTFLTAI	10	Unmodified	_TLAVTFLTAI_					0	0	0			REV__ENSG00000187080|ENST00000366480|OR2AK2	REV__ENSG00000187080|ENST00000366480|OR2AK2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	525.3157	1048.61685	0.41913	0.00022017	-0.041887	-2.2004E-05	0.37724	0.00019817	525.3156561614667	67.015	0.53509	67.099	66.852	67.387	0.083832	-0.039288	4.4667E-05	NaN	22.736	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294450	+		48398	18486	27739	27740							0.09448370796917516
TLAWLPDPF	9	Unmodified	_TLAWLPDPF_					0	0	0		nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF	nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.31396484375	2	530.279118	1058.54368	0.56786	0.00030112	-0.19216	-0.0001019	0.3757	0.00019923	530.2789008350935	62.576	0.72269	62.576	62.316	63.039	0					52	26	3	0	0	0	0.17611	1	15572	15572		34.102	10.954	1	562990			48399	11542	27740	27741	59189	59189					0.016752420743159746
TLAWLPDPF	9	Unmodified	_TLAWLPDPF_					0	0	0		nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF	nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.8154296875	2	530.279118	1058.54368	0.48029	0.00025469	0.0082602	4.3802E-06	0.48855	0.00025907	530.2790930566767	62.477	0.62954	62.574	62.357	62.986	0.096985					45	22	3	0	0	0	0.19839	1	15528	15528		21.747	4.8044	1	587210			48400	11542	27740	27741	59190	59190					0.016752420743159746
TLAYYLSL	8	Unmodified	_TLAYYLSL_					0	0	0			REV__ENSG00000132975|ENST00000405846|GPR12	REV__ENSG00000132975|ENST00000405846|GPR12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2608947753906	2	472.260394	942.506234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.744	1	41.744	41.244	42.244	0								0	0	0	0.33941	1	9024	9024		19.439	1.304	1		+		48401	15600	27741	27742	59191	59191					0.03268150808708015
TLCMIVLL	8	Unmodified	_TLCMIVLL_					0	0	0			REV__nc|ENSG00000145246|Q9P241-2|ATP10D	REV__nc|ENSG00000145246|Q9P241-2|ATP10D	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2705383300781	2	453.263568	904.512582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.738	1	74.79	74.29	75.29	0.052361								0	0	0	0.31676	1	19158	19158		26.341	0	1		+		48402	16286	27742	27743	59192	59192					0.05650629444221522
TLCRRLLLA	9	Unmodified	_TLCRRLLLA_					0	0	0			REV__RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	REV__RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.830078125	2	529.828786	1057.64302	0.11905	6.3075E-05	2.7625	0.0014636	2.8815	0.0015267	529.8300111564438	12.416	0.42122	12.319	12.072	12.493	-0.096607					18	14	2	0	0	0	0.26251	1	132	132		0.6015	0	1	68217	+		48403	17806	27743	27744	59193	59193					0.11650361487454575
TLCTKLFLI	9	Unmodified	_TLCTKLFLI_					0	0	0		ENST00000561424.5_1_15:45009826-45011035:+|nuORF	ENST00000561424.5_1_15:45009826-45011035:+|nuORF	ENST00000561424.5_1_15:45009826-45011035:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3189697265625	2	526.314646	1050.61474	0.53136	0.00027966	2.4417	0.0012851	2.9731	0.0015648	526.3157360476769	76.266	1.4029	76.234	75.588	76.991	-0.031479					125	51	3	0	0	0	0.18803	1	19538	19538		25.399	0	1	1741400			48404	11912	27744	27745	59194	59194					0.09145618787488274
TLCWSPRAPSL	11	Unmodified	_TLCWSPRAPSL_					0	0	0			REV__ENST00000497908.1_1_3:49843433-49843589:-|nuORF	REV__ENST00000497908.1_1_3:49843433-49843589:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2349853515625	3	410.881502	1229.62268	0.064101	2.6338E-05	1.3338	0.00054802	1.3979	0.00057436	410.8822673986845	38.045	0.31329	38.142	37.953	38.266	0.097527					14	10	2	0	0	0	0.33056	1	7912	7912		5.8681	0	1	64210	+		48405	21689	27745	27746	59195	59195					0.017051460369657434
TLDANSEENVF	11	Unmodified	_TLDANSEENVF_					0	0	0			REV__nc|ENSG00000164707|Q9UKG4|SLC13A4	REV__nc|ENSG00000164707|Q9UKG4|SLC13A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.522216796875	3	413.522697	1237.54626	0.21868	9.0427E-05	-0.78531	-0.00032474	-0.56664	-0.00023432	413.5222820511493	41.145	0.50169	41.236	40.927	41.429	0.090252					43	18	3	0	0	0	0.44088	1	8846	8846		5.8681	5.8681	1	456840	+		48406	23066	27746	27747	59196	59196					-0.06300999049335587
TLDKPPYKF	9	Unmodified	_TLDKPPYKF_					0	0	0			REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L	REV__nc|ENSG00000129691|Q9UBL3-2|ASH2L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.8217163085938	2	554.8055	1107.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.582	1	52.632	52.132	53.132	0.050575								0	0	0	0.21009	1	12354	12354		19.257	2.3147	1		+		48407	15428	27747	27748	59197	59197					0.04695200137120992
TLDLRQQNGTA	11	Unmodified	_TLDLRQQNGTA_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.5257263183594	3	406.214198	1215.62076	-0.24565	-9.9785E-05	0.34422	0.00013983	0.098577	4.0043E-05	406.2142848729237	18.604	0.34727	18.604	18.391	18.738	0					13	11	2	0	0	0	0.33146	1	1923	1923		6.6235	1.2207	1	24407			48408	883	27748	27749	59198	59198					0.021578085527153235
TLDLRQQNGTA	11	Unmodified	_TLDLRQQNGTA_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	406.214198	1215.62076	-0.27864	-0.00011319	7.4042	0.0030077	7.1255	0.0028945	406.2164467909005	19.033	0.085835	18.975	18.901	18.986	-0.058174	0.1853	0.0084591	NaN	6.6235	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26629			48409	883	27748	27749							0.021578085527153235
TLDPQMASNLL	11	Unmodified	_TLDPQMASNLL_					0	0	0			REV__nc|ENSG00000156687|Q6UXZ4-2|UNC5D	REV__nc|ENSG00000156687|Q6UXZ4-2|UNC5D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8087768554688	2	601.807913	1201.60127	0.61854	0.00037224	0.017594	1.0588E-05	0.63614	0.00038283	601.8080491298982	74.485	1.4116	74.485	73.632	75.043	0					93	48	3	0	0	0	0.37585	1	19163	19163		14.405	0.49933	1	772990	+		48410	16755	27749	27750	59199	59199					0.008537162176025959
TLDVAVRR	8	Unmodified	_TLDVAVRR_					0	0	0		ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;ENST00000496235.5_1_22:50685302-50686327:-|nuORF;ENST00000497952.5_1_22:50685106-50686347:-|nuORF;ENST00000454936.5_1_22:50684197-50686327:-|nuORF	ENST00000477814.5_1_22:50684197-50686750:-|nuORF	ENST00000477814.5_1_22:50684197-50686750:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.27978515625	2	465.279983	928.545414	-0.31256	-0.00014543	-0.091077	-4.2376E-05	-0.40364	-0.00018781	465.27993407069346	27.682	0.45887	27.66	27.464	27.923	-0.021412					30	15	3	0	0	0	0.1951	1	4760	4760		43.858	16.975	1	167010			48411	1597	27750	27751	59200	59200					0.07828295882939074
TLDVAVRR	8	Unmodified	_TLDVAVRR_					0	0	0		ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;ENST00000496235.5_1_22:50685302-50686327:-|nuORF;ENST00000497952.5_1_22:50685106-50686347:-|nuORF;ENST00000454936.5_1_22:50684197-50686327:-|nuORF	ENST00000477814.5_1_22:50684197-50686750:-|nuORF	ENST00000477814.5_1_22:50684197-50686750:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.8965148925781	2	465.279983	928.545414	-0.1707	-7.9425E-05	-0.28184	-0.00013114	-0.45255	-0.00021056	465.2798097705975	27.662	0.33816	27.651	27.499	27.837	-0.011562					23	11	3	0	0	0	0.16568	1	4723	4723		58.679	26.373	1	159370			48412	1597	27750	27751	59201	59201					0.07828295882939074
TLDVAVRR	8	Unmodified	_TLDVAVRR_					0	0	0		ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;ENST00000496235.5_1_22:50685302-50686327:-|nuORF;ENST00000497952.5_1_22:50685106-50686347:-|nuORF;ENST00000454936.5_1_22:50684197-50686327:-|nuORF	ENST00000477814.5_1_22:50684197-50686750:-|nuORF	ENST00000477814.5_1_22:50684197-50686750:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	465.279983	928.545414	-0.28738	-0.00013371	-0.20393	-9.4884E-05	-0.49131	-0.0002286	465.27986179780316	27.712	0.4238	27.712	27.53	27.954	0	0.037487	-1.0823E-05	NaN	49.933	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136520			48413	1597	27750	27751							0.07828295882939074
TLDVIAKIF	9	Unmodified	_TLDVIAKIF_					0	0	0			REV__nc|ENSG00000127191|Q12933-4|TRAF2	REV__nc|ENSG00000127191|Q12933-4|TRAF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7994689941406	2	510.310418	1018.60628	0.20483	0.00010452	0.61619	0.00031445	0.82101	0.00041897	510.310767396832	68.496	0.4241	68.568	68.357	68.781	0.071938					28	15	2	0	0	0	0.1939	1	17263	17263		24.021	0	1	324230	+		48414	15332	27751	27752	59202	59202					0.09772388142528143
TLDYESYKF	9	Unmodified	_TLDYESYKF_					0	0	0		nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;nc|ENSG00000157212|Q6ZW49-2|PAXIP1;ENSG00000157212|ENST00000404141|PAXIP1	nc|ENSG00000157212|Q6ZW49-1|PAXIP1	nc|ENSG00000157212|Q6ZW49-1|PAXIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.274658203125	2	583.274229	1164.53391	0.35343	0.00020615	-0.12233	-7.1351E-05	0.2311	0.00013479	583.2738086763159	61.028	1.7181	61.028	60.548	62.266	0					123	63	3	0	0	0	0.18803	1	14973	14973		25.399	0	1	2953300			48415	10703	27752	27753	59203	59203					-0.0417799072172329
TLDYESYKF	9	Unmodified	_TLDYESYKF_					0	0	0		nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;nc|ENSG00000157212|Q6ZW49-2|PAXIP1;ENSG00000157212|ENST00000404141|PAXIP1	nc|ENSG00000157212|Q6ZW49-1|PAXIP1	nc|ENSG00000157212|Q6ZW49-1|PAXIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.2745971679688	2	583.274229	1164.53391	0.23247	0.00013559	0.19816	0.00011558	0.43063	0.00025117	583.2741184492071	60.982	1.6068	61.079	60.726	62.332	0.096985					106	58	3	0	0	0	0.14076	1	14948	14948		32.305	1.6689	1	3481500			48416	10703	27752	27753	59204	59204					-0.0417799072172329
TLDYESYKF	9	Unmodified	_TLDYESYKF_					0	0	0		nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;nc|ENSG00000157212|Q6ZW49-2|PAXIP1;ENSG00000157212|ENST00000404141|PAXIP1	nc|ENSG00000157212|Q6ZW49-1|PAXIP1	nc|ENSG00000157212|Q6ZW49-1|PAXIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.274169921875	2	583.274229	1164.53391	0.31835	0.00018569	0.13412	7.8231E-05	0.45248	0.00026392	583.2741211856263	60.994	1.7536	60.985	60.735	62.489	-0.0094528					107	64	2	0	0	0	0.14076	1	14990	14990		32.305	1.6689	1	3773900			48417	10703	27752	27753	59205	59205					-0.0417799072172329
TLEAKIQVT	9	Unmodified	_TLEAKIQVT_					0	0	0			REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2746276855469	2	501.795132	1001.57571	0.51358	0.00025771	-0.23411	-0.00011747	0.27948	0.00014024	501.7949547161979	40.515	0.45887	40.608	40.42	40.879	0.09267					19	16	2	0	0	0	0.21905	1	8728	8728		23.148	0	1	116680	+		48418	16879	27753	27754	59206	59206					0.07498609757476515
TLEDALHCF	9	Unmodified	_TLEDALHCF_					0	0	0		nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2973022460938	2	524.742042	1047.46953	0.38884	0.00020404	-0.17517	-9.192E-05	0.21367	0.00011212	524.7421098538133	67.506	0.17003	67.49	67.423	67.593	-0.016296					6	5	2	0	0	0	0.24311	1	16944	16944		16.942	1.0951	1	89482			48419	7488	27754	27755	59207	59207					-0.052304690795153874
TLEEFANGAAQ	11	Unmodified	_TLEEFANGAAQ_					0	0	0		ENSG00000184887|ENST00000392554|BTBD6;nc|ENSG00000184887|Q96KE9-1|BTBD6;nc|ENSG00000184887|Q96KE9-2|BTBD6	ENSG00000184887|ENST00000392554|BTBD6	ENSG00000184887|ENST00000392554|BTBD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.372314453125	2	575.772385	1149.53022	0.14655	8.438E-05	-2.6724	-0.0015387	-2.5259	-0.0014543	576.2706629622738	25.217	0.083851	25.161	25.102	25.186	-0.055931					4	2	2	0	0	0	0.3327	1	3990	3990		2.7352	0.67545	1	35030			48420	7479	27755	27756	59208	59208					-0.038566604955803996
TLEESFAAEL	10	Unmodified	_TLEESFAAEL_					0	0	0			REV__ENSG00000171860|ENST00000307637|C3AR1	REV__ENSG00000171860|ENST00000307637|C3AR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.8035888671875	2	555.271687	1108.52882	0.33807	0.00018772	1.3398	0.00074396	1.6779	0.00093168	555.2732396697369	42.957	0.082939	43.042	42.975	43.058	0.085197					4	2	2	0	0	0	0.30079	1	9388	9388		20.454	5.6154	1	111950	+		48421	17672	27756	27757	59209	59209					-0.021102945843495036
TLEKLLDRTSF	11	Unmodified	_TLEKLLDRTSF_					0	0	0			REV__ENST00000492420.5_1_1:33547106-33548651:+|nuORF	REV__ENST00000492420.5_1_1:33547106-33548651:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.5822448730469	3	441.581998	1321.72417	0.15717	6.9404E-05	0.77483	0.00034215	0.932	0.00041156	441.5821941346736	29.658	0.67592	29.671	29.272	29.948	0.012266					49	22	3	0	0	0	0.39244	1	5323	5323		12.228	0.59622	1	205500	+		48422	16139	27757	27758	59210	59210					0.07617295940508484
TLELFEQF	8	Unmodified	_TLELFEQF_					0	0	0			REV__ENSG00000163945|ENST00000389851|UVSSA	REV__ENSG00000163945|ENST00000389851|UVSSA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.3291015625	2	513.760758	1025.50696	0.21953	0.00011279	0.060896	3.1286E-05	0.28043	0.00014407	514.2618895736157	27.19	0.37421	27.19	26.979	27.354	0					16	12	2	0	0	0	0.34337	1	4595	4595		5.2307	0	1	57019	+		48423	17107	27758	27759	59211	59211					-0.00477054542238875
TLELQIILF	9	Unmodified	_TLELQIILF_					0	0	0		ENSG00000149133|ENST00000278409|OR5F1	ENSG00000149133|ENST00000278409|OR5F1	ENSG00000149133|ENST00000278409|OR5F1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3184204101562	2	545.33135	1088.64815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.33	1	119.3	118.8	119.8	-0.024361								0	0	0	0.26334	1	30807	30807		2.0598	0	1				48424	4847	27759	27760	59212	59212					0.10736943831034296
TLELTHLTQLL	11	Unmodified	_TLELTHLTQLL_					0	0	0			REV__ENSG00000189431|ENST00000529419|RASSF10	REV__ENSG00000189431|ENST00000529419|RASSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.3744506835938	2	641.374278	1280.734	0.6368	0.00040843	-0.31042	-0.00019909	0.32638	0.00020933	641.3740660864919	65.833	0.82858	65.833	65.488	66.317	0					76	29	3	0	0	0	0.40332	2	16498	16403;16498		10.8	10.8	1	1907700	+		48425	18608	27760	27761	59213;59214	59214					0.10486483945896907
TLELTHLTQLL	11	Unmodified	_TLELTHLTQLL_					0	0	0			REV__ENSG00000189431|ENST00000529419|RASSF10	REV__ENSG00000189431|ENST00000529419|RASSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.3746948242188	2	641.374278	1280.734	0.65473	0.00041993	-0.19828	-0.00012717	0.45645	0.00029276	641.3740883765579	65.756	0.89973	65.845	65.46	66.359	0.088882					93	32	4	0	0	0	0.42762	1	16477	16477		7.609	7.609	1	1883100	+		48426	18608	27760	27761	59215	59215					0.10486483945896907
TLELTHLTQLL	11	Unmodified	_TLELTHLTQLL_					0	0	0			REV__ENSG00000189431|ENST00000529419|RASSF10	REV__ENSG00000189431|ENST00000529419|RASSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.3745727539062	2	641.374278	1280.734	0.63275	0.00040583	-0.23169	-0.0001486	0.40106	0.00025723	641.3740647108353	65.869	0.80084	65.858	65.504	66.305	-0.011337					85	28	4	0	0	0	0.40332	1	16452	16452		10.8	2.644	1	1594600	+		48427	18608	27760	27761	59216	59216					0.10486483945896907
TLEQGSLQR	9	Unmodified	_TLEQGSLQR_					0	0	0			REV__ENST00000368309.3_1_1:156006093-156006240:-|nuORF	REV__ENST00000368309.3_1_1:156006093-156006240:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.8367309570312	2	516.277638	1030.54072	0.25466	0.00013148	2.6018	0.0013433	2.8565	0.0014747	516.2796285906333	43.257	0.35551	43.341	43.166	43.522	0.083996					20	12	3	0	0	0	0.21905	1	9431	9431		16.942	0	1	207360	+		48428	20333	27761	27762	59217	59217					0.026673669495039576
TLEQLRTSI	9	Unmodified	_TLEQLRTSI_					0	0	0			REV__nc|ENSG00000196712|P21359-2|NF1	REV__nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3031005859375	2	530.803488	1059.59242	0.12623	6.7002E-05	-1.4636	-0.0007769	-1.3374	-0.00070989	531.3049157731557	60.109	1.0747	60.109	59.533	60.607	0					88	38	4	0	0	0	0.15219	1	14676	14676		30.637	0	1	1870700	+		48429	18681	27762	27763	59218	59218					0.06501110643444008
TLEQLRTSI	9	Unmodified	_TLEQLRTSI_					0	0	0			REV__nc|ENSG00000196712|P21359-2|NF1	REV__nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3033447265625	2	530.803488	1059.59242	-0.24349	-0.00012924	0.38832	0.00020612	0.14484	7.6879E-05	531.3052021457119	60.018	1.4568	60.113	59.382	60.839	0.095093					91	52	3	0	0	0	0.22188	1	14578	14578		20.454	0	1	1545700	+		48430	18681	27762	27763	59219	59219					0.06501110643444008
TLEQLRTSI	9	Unmodified	_TLEQLRTSI_					0	0	0			REV__nc|ENSG00000196712|P21359-2|NF1	REV__nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3033447265625	2	530.803488	1059.59242	0.30612	0.00016249	-0.07726	-4.101E-05	0.22886	0.00012148	530.8055068488492	60.088	0.75212	60.076	59.652	60.404	-0.011486					63	26	4	0	0	0	0.17787	1	14625	14625		26.884	0	1	1426600	+		48431	18681	27762	27763	59220	59220					0.06501110643444008
TLERKLWP	8	Unmodified	_TLERKLWP_					0	0	0			REV__nc|ENSG00000197579|Q9NS56-2|TOPORS	REV__nc|ENSG00000197579|Q9NS56-2|TOPORS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.290283203125	2	521.805834	1041.59712	0.51368	0.00026804	0.54929	0.00028662	1.063	0.00055467	521.8062337306845	40.3	0.6241	40.4	40.288	40.912	0.099407					28	22	2	0	0	0	0.41097	1	8616	8616		18.135	2.2878	1	107710	+		48432	18746	27763	27764	59221	59221					0.0779803957684635
TLERVGFLR	9	Unmodified	_TLERVGFLR_					0	0	0		ENST00000404622.5_1_18:61557121-61557187:+|nuORF	ENST00000404622.5_1_18:61557121-61557187:+|nuORF	ENST00000404622.5_1_18:61557121-61557187:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8038940429688	2	545.822015	1089.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.088	1	33.143	32.643	33.643	0.055309								0	0	0	0.22377	1	6379	6379		14.838	1.7958	1				48433	10214	27764	27765	59222	59222					0.08824826979844147
TLESMAEEL	9	Unmodified	_TLESMAEEL_					0	0	0			REV__ENSG00000068724|ENST00000319190|TTC7A	REV__ENSG00000068724|ENST00000319190|TTC7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.73895263671875	2	511.739165	1021.46378	0.14381	7.3594E-05	0.10946	5.6013E-05	0.25327	0.00012961	511.73899693758665	69.567	0.65943	69.567	69.339	69.999	0					52	23	3	0	0	0	0.24311	1	17589	17589		16.942	0	1	535140	+		48434	13704	27765	27766	59223	59223					-0.04609612381818806
TLETSFYKF	9	Unmodified	_TLETSFYKF_					0	0	0			REV__ENSG00000142182|ENST00000628202|DNMT3L	REV__ENSG00000142182|ENST00000628202|DNMT3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2882080078125	2	568.28714	1134.55973	0.45464	0.00025836	-1.3535	-0.00076918	-0.89886	-0.00051081	568.2878714497103	78.948	1.2918	78.948	78.533	79.825	0					139	51	4	0	0	0	0.24913	1	20427	20427		12.532	0	1	1003600	+		48435	16104	27766	27767	59224	59224					-0.0021709647942316224
TLETSFYKF	9	Unmodified	_TLETSFYKF_					0	0	0			REV__ENSG00000142182|ENST00000628202|DNMT3L	REV__ENSG00000142182|ENST00000628202|DNMT3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2882080078125	2	568.28714	1134.55973	0.53529	0.0003042	-2.6639	-0.0015138	-2.1286	-0.0012096	568.2878109101343	78.969	1.3662	78.938	78.552	79.918	-0.030434					147	54	6	0	0	0	0.24913	1	20472	20472		12.532	2.4576	1	992240	+		48436	16104	27766	27767	59225	59225					-0.0021709647942316224
TLFDFQFNF	9	Unmodified	_TLFDFQFNF_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.7647094726562	2	589.779482	1177.54441	0.49178	0.00029004	1.3628	0.00080377	1.8546	0.0010938	589.7801699261125	75.529	0.62138	75.498	75.235	75.857	-0.031487					56	22	3	0	0	0	0.25989	2	19368	19368;19471		14.838	0.93222	1	415360	+		48437	16655	27767	27768	59226;59227	59226					-0.03725963276610855
TLFDFQFNF	9	Unmodified	_TLFDFQFNF_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.7646484375	2	589.779482	1177.54441	0.49178	0.00029004	1.3628	0.00080377	1.8546	0.0010938	589.7801699261125	75.529	0.62138	75.498	75.235	75.857	-0.031487					56	22	3	0	0	0	0.25202	1	19321	19321		6.7232	0	1	415360	+		48438	16655	27767	27768	59228	59228					-0.03725963276610855
TLFHELVLMEL	11	Unmodified	_TLFHELVLMEL_					0	0	0			REV__nc|ENSG00000288393|Q92670|ZNF75CP	REV__nc|ENSG00000288393|Q92670|ZNF75CP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.5992431640625	3	448.91258	1343.71591	0.25121	0.00011277	0.60298	0.00027069	0.8542	0.00038346	448.9128421679448	44.078	0.99505	44.162	43.463	44.458	0.083992					80	36	3	0	0	0	0.33202	1	9599	9599		1.3296	0	1	378590	+		48439	23244	27768	27769	59229	59229					0.05780025699527869
TLFKSKISRK	10	Unmodified	_TLFKSKISRK_					0	0	0		nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2563781738281	3	403.255557	1206.74484	0.080504	3.2464E-05	0.61313	0.00024725	0.69364	0.00027971	403.25609609707027	32.42	0.73357	32.476	32.157	32.891	0.055313					41	26	2	0	0	0	0.38522	1	6214	6214		6.1918	0	1	247810			48440	7467	27769	27770	59230	59230					0.14973931110830563
TLFKSKISRK	10	Unmodified	_TLFKSKISRK_					0	0	0		nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	403.255557	1206.74484	0.13915	5.6114E-05	0.64611	0.00026055	0.78526	0.00031666	403.25601282242604	32.538	0.75999	32.538	32.279	33.039	0	0.0042094	-5.3903E-05	NaN	6.1918	40	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246560			48441	7467	27769	27770							0.14973931110830563
TLFLFVVWQI	10	Unmodified	_TLFLFVVWQI_					0	0	0		ENSG00000174038|ENST00000312292|C9orf131	ENSG00000174038|ENST00000312292|C9orf131	ENSG00000174038|ENST00000312292|C9orf131	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3682861328125	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.54	1	117.57	117.07	118.07	0.023476								0	0	0	0.38201	1	30463	30463		0.45834	0	1				48442	6770	27770	27771	59231	59231					0.10020911993365189
TLFLVGLEF	9	Unmodified	_TLFLVGLEF_					0	0	0		nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3;ENSG00000150403|ENST00000434316|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2305908203125	2	519.797143	1037.57973	0.43354	0.00022535	1.0841	0.00056351	1.5176	0.00078886	520.2997614186652	79.909	0.91401	79.88	79.348	80.262	-0.028931					49	33	2	0	0	0	0.25526	1	20802	20802		7.9102	0.62092	1	214600			48443	4908	27771	27772	59232	59232					0.06244699251192287
TLFLVGLEF	9	Unmodified	_TLFLVGLEF_					0	0	0		nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3;ENSG00000150403|ENST00000434316|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	519.797143	1037.57973	0.45898	0.00023858	1.437	0.00074696	1.896	0.00098554	520.2998844521019	79.719	1.1169	79.719	79.23	80.346	0	-0.012709	0.00026306	NaN	7.9102	50	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112430			48444	4908	27771	27772							0.06244699251192287
TLFLVGLEF	9	Unmodified	_TLFLVGLEF_					0	0	0		nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3;ENSG00000150403|ENST00000434316|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	nc|ENSG00000150403|Q6UWJ1-3|TMCO3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	519.797143	1037.57973	0.41489	0.00021566	0.96689	0.00050259	1.3818	0.00071825	519.7970772427236	79.534	0.90784	79.595	79.273	80.181	0.061409	-0.13609	-0.00022568	NaN	7.9102	47	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142060			48445	4908	27771	27772							0.06244699251192287
TLFNSRPEIKF	11	Unmodified	_TLFNSRPEIKF_					0	0	0			REV__MER101_dup138|chr6:25791995-25792346:+|1.177437938255759|0.3364633945134991|1.81|507.0|5|2|sense	REV__MER101_dup138|chr6:25791995-25792346:+|1.177437938255759|0.3364633945134991|1.81|507.0|5|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7704772949219	3	451.250472	1350.72959	0.49461	0.00022319	-0.085084	-3.8394E-05	0.40952	0.0001848	451.2503733733593	47.768	0.40867	47.816	47.51	47.919	0.047523					35	14	3	0	0	0	0.32951	1	10825	10825		10.315	3.2781	1	1567800	+		48446	22854	27772	27773	59233	59233					0.06825019522966613
TLFNSRPEIKF	11	Unmodified	_TLFNSRPEIKF_					0	0	0			REV__MER101_dup138|chr6:25791995-25792346:+|1.177437938255759|0.3364633945134991|1.81|507.0|5|2|sense	REV__MER101_dup138|chr6:25791995-25792346:+|1.177437938255759|0.3364633945134991|1.81|507.0|5|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7703857421875	3	451.250472	1350.72959	0.45069	0.00020337	0.20827	9.3982E-05	0.65896	0.00029735	451.25055311842385	47.783	0.39804	47.826	47.504	47.902	0.04332					36	14	3	0	0	0	0.32951	1	10800	10800		7.0371	0.40671	1	1321100	+		48447	22854	27772	27773	59234	59234					0.06825019522966613
TLFRKFDF	8	Unmodified	_TLFRKFDF_					0	0	0			REV__ENSG00000011405|ENST00000691414|PIK3C2A	REV__ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2952880859375	2	537.292559	1072.57057	0.50016	0.00026873	0.33702	0.00018108	0.83718	0.00044981	537.2927138702855	67.983	3.077	67.966	66.814	69.891	-0.016296					252	109	5	0	0	0	0.43302	1	17235	17235		11.64	1.4569	1	3195400	+		48448	13430	27773	27774	59235	59235					0.0371835068551718
TLFTLGLDLS	10	Unmodified	_TLFTLGLDLS_					0	0	0		ENSG00000141349|ENST00000269097|G6PC3	ENSG00000141349|ENST00000269097|G6PC3	ENSG00000141349|ENST00000269097|G6PC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.319580078125	2	540.30279	1078.59103	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.917	1	96.917	96.417	97.417	0								0	0	0	0.37044	1	25908	25908		6.2058	0	1				48449	4368	27774	27775	59236	59236					0.05487476554662862
TLFVCLFI	8	Unmodified	_TLFVCLFI_					0	0	0			REV__ENST00000556745.1_1_14:76107286-76108289:+|nuORF	REV__ENST00000556745.1_1_14:76107286-76108289:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7776184082031	2	478.269707	954.524861	0.35266	0.00016867	-0.89836	-0.00042966	-0.5457	-0.00026099	478.2693623576165	19.763	0.39259	19.707	19.485	19.877	-0.055693					18	13	2	0	0	0	0.34046	1	2361	2361		14.582	0	1	43922	+		48450	15053	27775	27776	59237	59237					0.045779891789152316
TLFVNRTLF	9	Unmodified	_TLFVNRTLF_					0	0	0		nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;ENST00000492449.5_1_3:184603882-184769810:+|nuORF	nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7588500976562	2	555.818941	1109.62333	0.44758	0.00024877	-1.0708	-0.00059515	-0.62319	-0.00034638	555.8183477812597	57.111	0.36222	57.111	56.937	57.299	0					18	13	2	0	0	0	0.24311	1	13721	13721		11.64	0	1	170950			48451	5267	27776	27777	59238	59238					0.0729030874831551
TLGERYWWLWM	11	Unmodified	_TLGERYWWLWM_					0	0	0		nc|ENSG00000132554|Q8NE09-2|RGS22;ENST00000520923.5_1_8:101051146-101092499:-|nuORF;nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22	nc|ENSG00000132554|Q8NE09-2|RGS22	nc|ENSG00000132554|Q8NE09-2|RGS22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2529296875	3	514.251707	1539.73329	0.44738	0.00023007	0.18256	9.388E-05	0.62994	0.00032395	514.2523207680778	21.014	0.78076	21.014	20.678	21.459	0					78	26	4	0	0	0	0.48247	1	2704	2704		0.40827	0	1	234990			48452	3648	27777	27778	59239	59239					-0.014986339748020328
TLGGIYKF	8	Unmodified	_TLGGIYKF_					0	0	0		ENSG00000178919|ENST00000375123|FOXE1	ENSG00000178919|ENST00000375123|FOXE1	ENSG00000178919|ENST00000375123|FOXE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7552795410156	2	449.755278	897.496004	0.32991	0.00014838	-0.35497	-0.00015965	-0.025058	-1.127E-05	449.7550530105441	53.353	0.73741	53.353	53.121	53.858	0					58	27	3	0	0	0	0.19197	1	12618	12618		44.407	4.4497	1	1007800			48453	7085	27778	27779	59240	59240					0.04315587874134508
TLGGIYKF	8	Unmodified	_TLGGIYKF_					0	0	0		ENSG00000178919|ENST00000375123|FOXE1	ENSG00000178919|ENST00000375123|FOXE1	ENSG00000178919|ENST00000375123|FOXE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.7552490234375	2	449.755278	897.496004	0.25534	0.00011484	-0.14605	-6.5688E-05	0.10929	4.9152E-05	449.75503674038055	53.327	0.68742	53.383	53.079	53.766	0.056255					56	25	3	0	0	0	0.15515	2	12565	12565;12615		50.855	10.898	1	1054100			48454	7085	27778	27779	59241;59242	59241					0.04315587874134508
TLGGIYKF	8	Unmodified	_TLGGIYKF_					0	0	0		ENSG00000178919|ENST00000375123|FOXE1	ENSG00000178919|ENST00000375123|FOXE1	ENSG00000178919|ENST00000375123|FOXE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.7552490234375	2	449.755278	897.496004	0.31642	0.00014231	-0.30098	-0.00013537	0.015446	6.9469E-06	449.7550466654332	53.595	0.8448	53.586	53.305	54.149	-0.0096054					67	31	3	0	0	0	0.10069	1	12653	12653		60.39	2.9182	1	1092500			48455	7085	27778	27779	59243	59243					0.04315587874134508
TLGHEQFRLK	10	Unmodified	_TLGHEQFRLK_					0	0	0		ENSG00000188585|ENST00000623247|CLEC20A	ENSG00000188585|ENST00000623247|CLEC20A	ENSG00000188585|ENST00000623247|CLEC20A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2315673828125	3	410.231412	1227.67241	-0.45789	-0.00018784	1.1845	0.0004859	0.72658	0.00029806	410.2318107137154	103.19	0.31503	103.19	102.97	103.28	0					48	44	2	0	0	0	0.4022	2	27395	27395;27427		3.0723	0	1	7125700			48456	7758	27779	27780	59244;59245	59244					0.0676759703726475
TLGHEQFRLK	10	Unmodified	_TLGHEQFRLK_					0	0	0		ENSG00000188585|ENST00000623247|CLEC20A	ENSG00000188585|ENST00000623247|CLEC20A	ENSG00000188585|ENST00000623247|CLEC20A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2318115234375	3	410.231412	1227.67241	-0.10162	-4.1686E-05	0.70047	0.00028735	0.59885	0.00024567	410.2317625624956	103.55	0.55281	103.56	103.51	104.07	0.0082626					109	76	2	0	0	0	0.4022	1	27560	27560		3.0723	0	1	4401600			48457	7758	27779	27780	59246	59246					0.0676759703726475
TLGHEQFRLK	10	Unmodified	_TLGHEQFRLK_					0	0	0		ENSG00000188585|ENST00000623247|CLEC20A	ENSG00000188585|ENST00000623247|CLEC20A	ENSG00000188585|ENST00000623247|CLEC20A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	410.231412	1227.67241	-0.099622	-4.0868E-05	0.25451	0.00010441	0.15489	6.3542E-05	410.565814136545	102.9	0.034363	102.92	102.9	102.94	0.016685	-0.13387	-0.00078886	NaN	3.0723	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461120			48458	7758	27779	27780							0.0676759703726475
TLGHLSPIFK	10	Unmodified	_TLGHLSPIFK_					0	0	0		ENST00000296785.7_1_5:72858732-72861025:-|nuORF	ENST00000296785.7_1_5:72858732-72861025:-|nuORF	ENST00000296785.7_1_5:72858732-72861025:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2742919921875	2	556.826766	1111.63898	0.34344	0.00019124	-0.90921	-0.00050627	-0.56576	-0.00031503	556.82630911112	57.423	0.74077	57.509	57.047	57.788	0.085621					33	26	2	0	0	0	0.30586	1	13738	13738		13.906	2.7916	1	291800			48459	9192	27780	27781	59247	59247					0.08762595265397977
TLGHRLER	8	Unmodified	_TLGHRLER_					0	0	0		ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.28314208984375	2	491.283057	980.551562	-0.038215	-1.8774E-05	-0.053262	-2.6167E-05	-0.091477	-4.4941E-05	491.28300094033864	13.563	1.395	13.496	13.302	14.697	-0.067495					130	49	4	0	0	0	0.44569	1	625	625		7.2892	0	1	1313000			48460	3127	27781	27782	59248	59248					0.06050814114462355
TLGKHPGPL	9	Unmodified	_TLGKHPGPL_					0	0	0		ENST00000574928.5_1_16:3188909-3189179:+|nuORF	ENST00000574928.5_1_16:3188909-3189179:+|nuORF	ENST00000574928.5_1_16:3188909-3189179:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.7582702636719	2	460.271627	918.528701	0.17303	7.9641E-05	0.042481	1.9553E-05	0.21551	9.9194E-05	460.271595197109	35.734	0.57695	35.817	35.54	36.117	0.082359					39	20	2	0	0	0	0.18803	1	7234	7234		25.399	0	1	471470			48461	12042	27782	27783	59249	59249					0.06617794996998327
TLGKHPGPL	9	Unmodified	_TLGKHPGPL_					0	0	0		ENST00000574928.5_1_16:3188909-3189179:+|nuORF	ENST00000574928.5_1_16:3188909-3189179:+|nuORF	ENST00000574928.5_1_16:3188909-3189179:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.7582092285156	2	460.271627	918.528701	0.17118	7.8791E-05	0.11524	5.3042E-05	0.28642	0.00013183	460.27171090699625	35.678	0.76284	35.765	35.537	36.3	0.08625					42	27	2	0	0	0	0.18803	1	7228	7228		25.399	2.2509	1	468100			48462	12042	27782	27783	59250	59250					0.06617794996998327
TLGKTQIP	8	Unmodified	_TLGKTQIP_					0	0	0			REV__ENSG00000179477|ENST00000647874|ALOX12B	REV__ENSG00000179477|ENST00000647874|ALOX12B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.92578125	2	429.258185	856.501818	-0.13902	-5.9677E-05	-0.1944	-8.345E-05	-0.33343	-0.00014313	429.2579623177551	24.373	0.41874	24.373	24.22	24.639	0					23	13	2	0	0	0	0.32886	1	3807	3807		10.824	2.9138	1	55653	+		48463	18079	27783	27784	59251	59251					0.0678268638581585
TLGKTQIP	8	Unmodified	_TLGKTQIP_					0	0	0			REV__ENSG00000179477|ENST00000647874|ALOX12B	REV__ENSG00000179477|ENST00000647874|ALOX12B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	429.258185	856.501818	-0.19128	-8.2108E-05	-0.10705	-4.5953E-05	-0.29833	-0.00012806	429.25797227699934	24.418	0.36902	24.379	24.222	24.591	-0.038927	-0.014047	0.00020214	NaN	10.824	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64086	+		48464	18079	27783	27784							0.0678268638581585
TLGLPQQL	8	Unmodified	_TLGLPQQL_					0	0	0			REV__nc|ENSG00000108375|Q68DV7-3|RNF43	REV__nc|ENSG00000108375|Q68DV7-3|RNF43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7799377441406	2	435.258185	868.501818	0.15125	6.5834E-05	-0.88269	-0.0003842	-0.73143	-0.00031836	435.25758273831724	39.825	0.48028	39.918	39.803	40.284	0.092674					26	16	3	0	0	0	0.34092	1	8542	8542		8.5933	1.304	1	244590	+		48465	14590	27784	27785	59252	59252					0.062306863857997996
TLGLPQQL	8	Unmodified	_TLGLPQQL_					0	0	0			REV__nc|ENSG00000108375|Q68DV7-3|RNF43	REV__nc|ENSG00000108375|Q68DV7-3|RNF43	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	435.258185	868.501818	-0.26987	-0.00011746	-0.66865	-0.00029103	-0.93851	-0.0004085	435.2576310522464	39.928	0.43828	39.928	39.723	40.161	0	0.0039459	0.00014937	NaN	8.5933	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181490	+		48466	14590	27784	27785							0.062306863857997996
TLGLPQQL	8	Unmodified	_TLGLPQQL_					0	0	0			REV__nc|ENSG00000108375|Q68DV7-3|RNF43	REV__nc|ENSG00000108375|Q68DV7-3|RNF43	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	435.258185	868.501818	-0.030715	-1.3369E-05	-0.92999	-0.00040479	-0.96071	-0.00041816	435.2575674572289	39.827	0.49778	39.927	39.676	40.173	0.099407	0.0022962	-7.8139E-05	NaN	8.5933	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207510	+		48467	14590	27784	27785							0.062306863857997996
TLGLPTTK	8	Unmodified	_TLGLPTTK_					0	0	0		ENST00000421422.1_2_20:39813596-39813806:-|nuORF	ENST00000421422.1_2_20:39813596-39813806:-|nuORF	ENST00000421422.1_2_20:39813596-39813806:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.5198974609375	2	415.752736	829.490919	0.077412	3.2184E-05	0.22386	9.307E-05	0.30127	0.00012525	415.75272462882236	29.104	0.45518	29.117	28.935	29.39	0.013474					19	16	2	0	0	0	0.34039	1	5182	5182		10.824	0	1	48293			48468	10373	27785	27786	59253	59253					0.06935284011512977
TLGPRFLL	8	Unmodified	_TLGPRFLL_					0	0	0		ENST00000502001.2_1_5:8457745-8460055:+|nuORF	ENST00000502001.2_1_5:8457745-8460055:+|nuORF	ENST00000502001.2_1_5:8457745-8460055:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.784423828125	2	458.78437	915.554188	-0.16973	-7.7868E-05	0.81219	0.00037262	0.64246	0.00029475	458.78437772047306	65.237	0.61713	65.237	65.017	65.634	0					35	21	3	0	0	0	0.32038	1	16291	16291		28.487	10.352	1	207810			48469	11269	27786	27787	59254	59254					0.09303269519432433
TLGPRFLL	8	Unmodified	_TLGPRFLL_					0	0	0		ENST00000502001.2_1_5:8457745-8460055:+|nuORF	ENST00000502001.2_1_5:8457745-8460055:+|nuORF	ENST00000502001.2_1_5:8457745-8460055:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.784423828125	2	458.78437	915.554188	-0.27549	-0.00012639	0.42605	0.00019546	0.15056	6.9074E-05	458.7844436171683	65.155	0.50867	65.243	64.982	65.491	0.088882					30	18	3	0	0	0	0.42077	1	16257	16257		15.847	6.4997	1	362750			48470	11269	27786	27787	59255	59255					0.09303269519432433
TLGPRFLL	8	Unmodified	_TLGPRFLL_					0	0	0		ENST00000502001.2_1_5:8457745-8460055:+|nuORF	ENST00000502001.2_1_5:8457745-8460055:+|nuORF	ENST00000502001.2_1_5:8457745-8460055:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7843933105469	2	458.78437	915.554188	-0.093463	-4.2879E-05	0.51122	0.00023454	0.41776	0.00019166	458.7843031146779	65.241	0.53773	65.23	65.048	65.586	-0.011337					30	19	2	0	0	0	0.37937	1	16273	16273		21.747	3.6117	1	323590			48471	11269	27786	27787	59256	59256					0.09303269519432433
TLHEPGEGLE	10	Unmodified	_TLHEPGEGLE_					0	0	0			REV__ITFG2|p.L174Pfs*15|1|0.19|ENSG00000111203|chr12:2820200-2820200|T/-|frameshift_variant	REV__ITFG2|p.L174Pfs*15|1|0.19|ENSG00000111203|chr12:2820200-2820200|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2639770507812	2	541.261653	1080.50875	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.822	1	94.82	94.32	95.32	-0.0020142								0	0	0	0.37157	1	25309	25309		5.7319	1.4026	1		+		48472	14707	27787	27788	59257	59257					-0.028280455242793323
TLHEVLEKVF	10	Unmodified	_TLHEVLEKVF_					0	0	0		nc|ENSG00000180354|Q8N3F0-3|MTURN;nc|ENSG00000180354|Q8N3F0-2|MTURN;ENSG00000180354|ENST00000324453|MTURN	nc|ENSG00000180354|Q8N3F0-3|MTURN	nc|ENSG00000180354|Q8N3F0-3|MTURN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.84674072265625	3	405.564168	1213.67067	0.027376	1.1103E-05	0.3593	0.00014572	0.38667	0.00015682	405.8989877257063	53.593	0.44194	53.583	53.329	53.771	-0.0096092					35	16	3	0	0	0	0.31969	1	12632	12632		5.7834	5.7834	1	185680			48473	7184	27788	27789	59258	59258					0.07238543228640992
TLHHWQQL	8	Unmodified	_TLHHWQQL_					0	0	0		ENSG00000182606|ENST00000327628|TRAK1;nc|ENSG00000182606|Q9UPV9-2|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2776489257812	2	531.777608	1061.54066	0.56458	0.00030023	-3.5247	-0.0018743	-2.9601	-0.0015741	532.2761527416747	82.267	0.63453	82.245	81.959	82.594	-0.02285					33	24	2	0	0	0	0.20518	1	21478	21478		42.095	2.1372	1	321420			48474	7303	27789	27790	59259	59259					0.012354117401628173
TLHKIKVGL	9	Unmodified	_TLHKIKVGL_					0	0	0		ENST00000538009.5_1_11:72491938-72503953:-|nuORF	ENST00000538009.5_1_11:72491938-72503953:-|nuORF	ENST00000538009.5_1_11:72491938-72503953:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.80108642578125	2	504.831852	1007.64915	0.18229	9.2026E-05	-0.12252	-6.1852E-05	0.059771	3.0174E-05	504.83177623330795	16.261	0.31059	16.261	16.123	16.433	0					20	10	2	0	0	0	0.26168	1	1285	1285		1.8442	0	1	41190			48475	11695	27790	27791	59260	59260					0.14563202990609625
TLHKRRKGQ	9	Unmodified	_TLHKRRKGQ_					0	0	0			REV__ENST00000356352.6_1_10:12071104-12071191:-|nuORF	REV__ENST00000356352.6_1_10:12071104-12071191:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3440551757812	2	562.343981	1122.67341	0.14228	8.0013E-05	-0.26001	-0.00014622	-0.11773	-6.6204E-05	562.3438081930665	111.9	0.22963	111.88	111.77	112	-0.015625					31	24	2	0	0	0	0.35512	1	29115	29115		0.6015	0	1	62142	+		48476	20198	27791	27792	59261	59261					0.11697856196838075
TLHKSRPF	8	Unmodified	_TLHKSRPF_					0	0	0			REV__ENSG00000212122|ENST00000390666|TSSK1B	REV__ENSG00000212122|ENST00000390666|TSSK1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7632751464844	2	493.282526	984.550499	0.28329	0.00013974	-1.3174	-0.00064986	-1.0341	-0.00051012	493.2818863569986	66.678	0.77832	66.664	66.063	66.842	-0.013596					29	28	2	0	0	0	0.33995	1	16588	16588		10.183	0.80027	1	144300	+		48477	19026	27792	27793	59262	59262					0.05760599745565287
TLHRKVFTTK	10	Unmodified	_TLHRKVFTTK_					0	0	0			REV__ENSG00000132341|ENST00000543796|RAN	REV__ENSG00000132341|ENST00000543796|RAN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.55926513671875	3	410.915423	1229.72444	0.062318	2.5608E-05	0.40069	0.00016465	0.46301	0.00019026	410.9154810713792	35.998	0.4839	35.998	35.773	36.256	0					30	17	2	0	0	0	0.31497	1	7263	7263		7.0371	0	1	186150	+		48478	15562	27793	27794	59263	59263					0.11876760451036716
TLHSSFHPF	9	Unmodified	_TLHSSFHPF_					0	0	0		ENST00000451653.5_2_3:42594570-42594726:-|nuORF	ENST00000451653.5_2_3:42594570-42594726:-|nuORF	ENST00000451653.5_2_3:42594570-42594726:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.8194580078125	2	536.764166	1071.51378	0.3928	0.00021084	0.76437	0.00041028	1.1572	0.00062112	536.7644907268915	34.07	0.47549	34.137	34.012	34.487	0.06636					25	16	2	0	0	0	0.21905	1	6684	6684		11.64	0	1	126590			48479	10648	27794	27795	59264	59264					-0.019116968710022775
TLHSSFHPF	9	Unmodified	_TLHSSFHPF_					0	0	0		ENST00000451653.5_2_3:42594570-42594726:-|nuORF	ENST00000451653.5_2_3:42594570-42594726:-|nuORF	ENST00000451653.5_2_3:42594570-42594726:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.8189086914062	2	536.764166	1071.51378	0.34835	0.00018698	1.3993	0.0007511	1.7477	0.00093808	536.7647453827191	34.072	0.44091	34.139	33.939	34.38	0.066704					26	15	2	0	0	0	0.24311	1	6654	6654		11.64	0.81637	1	183220			48480	10648	27794	27795	59265	59265					-0.019116968710022775
TLHTGSLTRR	10	Unmodified	_TLHTGSLTRR_					0	0	0		HERV16-int_dup508|chr4:121323998-121324584:-|1.187224277094717|0.0129401805042467|6.52|520.0|1|1|sense	HERV16-int_dup508|chr4:121323998-121324584:-|1.187224277094717|0.0129401805042467|6.52|520.0|1|1|sense	HERV16-int_dup508|chr4:121323998-121324584:-|1.187224277094717|0.0129401805042467|6.52|520.0|1|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3255615234375	2	571.325454	1140.63635	0.26611	0.00015203	0.0013796	7.8822E-07	0.26749	0.00015282	571.3257784617853	97.017	0.42159	97.011	96.753	97.175	-0.0055466					63	41	3	0	0	0	0.39935	1	25971	25971		3.5965	0.60125	1	145460			48481	12396	27795	27796	59266	59266					0.07166139860419207
TLHTGSLTRR	10	Unmodified	_TLHTGSLTRR_					0	0	0		HERV16-int_dup508|chr4:121323998-121324584:-|1.187224277094717|0.0129401805042467|6.52|520.0|1|1|sense	HERV16-int_dup508|chr4:121323998-121324584:-|1.187224277094717|0.0129401805042467|6.52|520.0|1|1|sense	HERV16-int_dup508|chr4:121323998-121324584:-|1.187224277094717|0.0129401805042467|6.52|520.0|1|1|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	571.325454	1140.63635	0.20663	0.00011806	1.6144	0.00092235	1.821	0.0010404	571.3262714800159	96.99	0.16	97.061	97.004	97.164	0.070457	0.024712	0.00097957	NaN	3.5965	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81615			48482	12396	27795	27796							0.07166139860419207
TLHWLVAFK	9	Unmodified	_TLHWLVAFK_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A;REV__ENST00000493541.1_1_6:83839942-83844118:+|nuORF	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7881469726562	2	557.824027	1113.6335	0.57517	0.00032085	-0.083198	-4.641E-05	0.49198	0.00027444	557.8239266450132	50.373	0.54651	50.373	50.108	50.654	0					39	19	3	0	0	0	0.25323	1	11716	11716		6.2058	0	1	438150	+		48483	13929;21640	27796	27797	59267	59267					0.08122916473553232
TLIAGQKSAR	10	Unmodified	_TLIAGQKSAR_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.82080078125	2	522.811648	1043.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.179	1	90.27	89.77	90.77	0.090668								0	0	0	0.36441	1	23887	23887		8.7454	1.1365	1				48484	1896	27797	27798	59268	59268					0.08868236600164892
TLIDQKIQLFY	11	Unmodified	_TLIDQKIQLFY_					0	0	0			REV__ENSG00000088179|ENST00000263708|PTPN4	REV__ENSG00000088179|ENST00000263708|PTPN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.2625427246094	3	461.262377	1380.7653	-0.008987	-4.1454E-06	0.3296	0.00015203	0.32061	0.00014789	461.262411116705	53.475	0.57034	53.531	53.353	53.923	0.056259					60	21	4	0	0	0	0.46704	1	12632	12632		2.4348	0	1	912130	+		48485	14000	27798	27799	59269	59269					0.09015056980001646
TLIFPLARF	9	Unmodified	_TLIFPLARF_					0	0	0		ENST00000336735.8_1_14:81941264-81941366:-|nuORF	ENST00000336735.8_1_14:81941264-81941366:-|nuORF	ENST00000336735.8_1_14:81941264-81941366:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8632202148438	2	539.326402	1076.63825	0.48933	0.00026391	-0.51018	-0.00027515	-0.020849	-1.1244E-05	539.3258119623387	79.706	0.89709	79.768	79.182	80.079	0.061417					52	36	2	0	0	0	0.25526	1	20525	20525		7.9102	0	1	251850			48486	9489	27799	27800	59270	59270					0.10299800616326138
TLIGLPSQL	9	Unmodified	_TLIGLPSQL_					0	0	0			REV__ENST00000534767.1_1_11:43920467-43920710:+|nuORF	REV__ENST00000534767.1_1_11:43920467-43920710:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2870788574219	2	471.286943	940.559333	0.10439	4.9199E-05	-0.17941	-8.4554E-05	-0.075019	-3.5356E-05	471.2868458085966	71.027	0.69391	71.027	70.768	71.462	0					46	24	3	0	0	0	0.012929	1	18053	18053		74.929	3.7954	1	652640	+		48487	22059	27800	27801	59271	59271					0.0866752859137705
TLIGLPSQL	9	Unmodified	_TLIGLPSQL_					0	0	0			REV__ENST00000534767.1_1_11:43920467-43920710:+|nuORF	REV__ENST00000534767.1_1_11:43920467-43920710:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.28680419921875	2	471.286943	940.559333	0.16077	7.5771E-05	-0.12276	-5.7857E-05	0.03801	1.7914E-05	471.28683514677647	71.002	0.57932	71.062	70.8	71.379	0.060783					41	20	3	0	0	0	0.0037552	1	18016	18016		96.285	21.356	1	667950	+		48488	22059	27800	27801	59272	59272					0.0866752859137705
TLIGLPSQL	9	Unmodified	_TLIGLPSQL_					0	0	0			REV__ENST00000534767.1_1_11:43920467-43920710:+|nuORF	REV__ENST00000534767.1_1_11:43920467-43920710:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2867736816406	2	471.286943	940.559333	0.31694	0.00014937	-0.43887	-0.00020683	-0.12193	-5.7465E-05	471.28672837541893	71.03	0.62448	71.005	70.804	71.429	-0.024872					32	22	2	0	0	0	0.0037552	1	18033	18033		96.285	14.672	1	718110	+		48489	22059	27800	27801	59273	59273					0.0866752859137705
TLIKPIQKI	9	Unmodified	_TLIKPIQKI_					0	0	0		ENST00000327578.9_2_8:17886785-17886869:+|nuORF	ENST00000327578.9_2_8:17886785-17886869:+|nuORF	ENST00000327578.9_2_8:17886785-17886869:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.8057861328125	2	527.35516	1052.69577	0.58696	0.00030954	-0.20243	-0.00010675	0.38452	0.00020278	527.3548874968475	40.275	0.42138	40.275	40.024	40.445	0					20	14	2	0	0	0	0.25202	1	8552	8552		6.7232	0	1	136160			48490	9425	27801	27802	59274	59274					0.17152642821906738
TLILPFFF	8	Unmodified	_TLILPFFF_					0	0	0			REV__ENSG00000198786|ENST00000361567|MT-ND5	REV__ENSG00000198786|ENST00000361567|MT-ND5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7912292480469	2	499.291497	996.568441	0.44583	0.0002226	1.3523	0.0006752	1.7981	0.0008978	499.29223608883166	82.154	1.1823	82.154	81.631	82.813	0					98	44	3	0	0	0	0.32778	1	21479	21479		14.582	14.582	1	2250900	+		48491	18860	27802	27803	59275	59275					0.07001921947710343
TLILVNYIFFK	11	Unmodified	_TLILVNYIFFK_					0	0	0		CON__ENSEMBL:ENSBTAP00000023402	CON__ENSEMBL:ENSBTAP00000023402	CON__ENSEMBL:ENSBTAP00000023402	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.9426574707031	3	457.607596	1369.80096	-0.010626	-4.8623E-06	0.20877	9.5536E-05	0.19815	9.0674E-05	457.60807634851585	93.308	1.1255	93.308	92.614	93.739	0					199	97	3	0	0	0	0.47545	1	24868	24868		1.3296	0	1	310530		+	48492	201	27803	27804	59276	59276					0.13085139227609943
TLINPDIKV	9	Unmodified	_TLINPDIKV_					0	0	0		ENST00000461981.5_1_2:201718031-201721754:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1	ENST00000461981.5_1_2:201718031-201721754:-|nuORF	ENST00000461981.5_1_2:201718031-201721754:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.3025817871094	2	506.8055	1011.59645	0.38675	0.00019601	-3.6091	-0.0018291	-3.2223	-0.0016331	506.8037140819845	40.472	0.99123	40.571	39.844	40.835	0.099403					65	35	2	0	0	0	0.22674	1	8699	8699		22.736	1.1993	1	1532800			48493	465	27804	27805	59277	59277					0.0911120013714708
TLIPIALFS	9	Unmodified	_TLIPIALFS_					0	0	0			REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E	REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.8001403808594	2	487.799686	973.584819	0.3517	0.00017156	0.040151	1.9586E-05	0.39185	0.00019114	487.79968416640315	87.974	0.92278	88.063	87.802	88.724	0.089195					64	45	2	0	0	0	0.2451	1	23168	23168		10.824	0	1	174930	+		48494	23003	27805	27806	59278	59278					0.09697003113797109
TLIQYLQK	8	Unmodified	_TLIQYLQK_					0	0	0			REV__ENSG00000070770|ENST00000262506|CSNK2A2	REV__ENSG00000070770|ENST00000262506|CSNK2A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7534484863281	2	503.800217	1005.58588	0.33224	0.00016738	-0.46055	-0.00023203	-0.12832	-6.4645E-05	503.79987193579495	57.295	0.49433	57.381	57.104	57.598	0.085621					23	17	2	0	0	0	0.31302	1	13799	13799		22.736	2.3217	1	301020	+		48495	13736	27806	27807	59279	59279					0.08331217482714237
TLIRGKIFFL	10	Unmodified	_TLIRGKIFFL_					0	0	0		ENST00000443217.5_1_3:187943241-188123900:+|nuORF	ENST00000443217.5_1_3:187943241-188123900:+|nuORF	ENST00000443217.5_1_3:187943241-188123900:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.2561340332031	3	403.256898	1206.74886	-0.096933	-3.9089E-05	-2.4724	-0.00099701	-2.5693	-0.0010361	403.2561205303018	32.533	0.79175	32.587	32.277	33.069	0.054375					42	28	2	0	0	0	0.38745	1	6221	6221		5.7834	0.73591	1	246750			48496	10566	27807	27808	59280	59280					0.1537602060457175
TLIRGLGH	8	Unmodified	_TLIRGLGH_					0	0	0		ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7799987792969	2	433.763969	865.513385	0.014362	6.2298E-06	0.12009	5.2093E-05	0.13446	5.8322E-05	433.7639698798464	36.506	0.6268	36.506	36.332	36.959	0					39	21	3	0	0	0	0.44569	1	7426	7426		7.2892	0	1	239440			48497	6509	27808	27809	59281	59281					0.07524928199802616
TLIRGLGH	8	Unmodified	_TLIRGLGH_					0	0	0		ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	433.763969	865.513385	0.1215	5.2701E-05	-0.023769	-1.031E-05	0.097728	4.2391E-05	433.7638884843388	36.408	0.58334	36.491	36.308	36.891	0.082359	0.0065012	-3.5739E-06	NaN	7.2892	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225740			48498	6509	27808	27809							0.07524928199802616
TLIRGLGH	8	Unmodified	_TLIRGLGH_					0	0	0		ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	433.763969	865.513385	0.35932	0.00015586	-0.16087	-6.9778E-05	0.19845	8.6082E-05	433.7638017489864	36.369	0.67369	36.455	36.3	36.973	0.08625	-0.028701	-0.00012251	NaN	7.2892	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183990			48499	6509	27808	27809							0.07524928199802616
TLIRLHATL	9	Unmodified	_TLIRLHATL_					0	0	0			REV__ENST00000468492.5_3_10:14572436-14614290:-|nuORF	REV__ENST00000468492.5_3_10:14572436-14614290:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.771484375	2	519.326934	1036.63931	0.28286	0.0001469	0.32126	0.00016684	0.60412	0.00031374	519.3272216917156	61.712	1.1425	61.712	61.254	62.396	0					114	42	5	0	0	0	0.25202	1	15359	15359		3.5965	0	1	2715200	+		48500	21329	27809	27810	59282	59282					0.12246014985248621
TLIRLHATL	9	Unmodified	_TLIRLHATL_					0	0	0			REV__ENST00000468492.5_3_10:14572436-14614290:-|nuORF	REV__ENST00000468492.5_3_10:14572436-14614290:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7716064453125	2	519.326934	1036.63931	-0.0086565	-4.4956E-06	0.33477	0.00017385	0.32611	0.00016936	519.3273765309089	61.696	1.0023	61.687	61.324	62.327	-0.0085564					88	36	5	0	0	0	0.25526	1	15347	15347		1.8442	0	1	2829400	+		48501	21329	27809	27810	59283	59283					0.12246014985248621
TLISRWSF	8	Unmodified	_TLISRWSF_					0	0	0			REV__ENSG00000181450|ENST00000343776|ZNF678	REV__ENSG00000181450|ENST00000343776|ZNF678	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2637634277344	2	505.276909	1008.53927	0.059197	2.9911E-05	-0.82722	-0.00041797	-0.76802	-0.00038806	505.27626698979566	75.853	0.63832	75.853	75.503	76.141	0					49	22	3	0	0	0	0.41097	1	19594	19594		18.135	3.2967	1	164270	+		48502	18148	27810	27811	59284	59284					0.035337776514325014
TLISRWSF	8	Unmodified	_TLISRWSF_					0	0	0			REV__ENSG00000181450|ENST00000343776|ZNF678	REV__ENSG00000181450|ENST00000343776|ZNF678	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.26373291015625	2	505.276909	1008.53927	0.37076	0.00018734	-0.9377	-0.0004738	-0.56694	-0.00028646	505.2764924304291	76.75	0.7004	76.75	76.448	77.149	0					47	25	3	0	0	0	0.31934	1	19745	19745		18.135	1.1927	1	204290	+		48503	18148	27810	27811	59285	59285					0.035337776514325014
TLISRWSF	8	Unmodified	_TLISRWSF_					0	0	0			REV__ENSG00000181450|ENST00000343776|ZNF678	REV__ENSG00000181450|ENST00000343776|ZNF678	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.9747314453125	2	505.276909	1008.53927	-0.085132	-4.3015E-05	0.53949	0.00027259	0.45435	0.00022958	505.2769033001134	105.49	0.080597	105.49	105.45	105.53	0					16	10	2	0	0	0	0.34131	1	27935	27935		7.9102	1.187	1	51987	+		48504	18148	27810	27811	59286	59286					0.035337776514325014
TLITNSFI	8	Unmodified	_TLITNSFI_					0	0	0		ENST00000435030.1_2:149879593-149879722:+|nuORF	ENST00000435030.1_2:149879593-149879722:+|nuORF	ENST00000435030.1_2:149879593-149879722:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.2519226074219	2	454.758018	907.501483	0.080609	3.6658E-05	0.69398	0.00031559	0.77459	0.00035225	454.7581273181855	73.266	0.69307	73.266	73.02	73.713	0					52	24	3	0	0	0	0.34131	1	18645	18645		12.532	0	1	339100			48505	10504	27811	27812	59287	59287					0.044032666659632014
TLITNSFI	8	Unmodified	_TLITNSFI_					0	0	0		ENST00000435030.1_2:149879593-149879722:+|nuORF	ENST00000435030.1_2:149879593-149879722:+|nuORF	ENST00000435030.1_2:149879593-149879722:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	454.758018	907.501483	0.063973	2.9092E-05	0.55733	0.00025345	0.62131	0.00028254	454.75804417154586	73.166	0.71157	73.22	72.843	73.555	0.053833	-0.023204	-5.0533E-05	NaN	18.135	50	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299580			48506	10504	27811	27812							0.044032666659632014
TLIVNTMVFL	10	Unmodified	_TLIVNTMVFL_					0	0	0			REV__ENST00000541187.5_1_12:121647975-121666346:+|nuORF	REV__ENST00000541187.5_1_12:121647975-121666346:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7696533203125	2	575.83066	1149.64677	0.48674	0.00028028	-0.0084032	-4.8388E-06	0.47834	0.00027544	575.8306319935299	47.715	0.636	47.715	47.187	47.823	0					33	22	2	0	0	0	0.30555	1	10696	10696		20.415	1.1575	1	430830	+		48507	15724	27812	27813	59288	59288					0.07792986470644792
TLIYHEDY	8	Unmodified	_TLIYHEDY_					0	0	0			REV__ENST00000526582.1_1_11:90848103-90848802:-|nuORF	REV__ENST00000526582.1_1_11:90848103-90848802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.6989135742188	2	527.248015	1052.48148	0.39534	0.00020844	0.10422	5.4952E-05	0.49956	0.00026339	527.2480384773595	64.841	0.83111	64.934	64.633	65.464	0.09288					47	30	2	0	0	0	0.34046	1	16069	16069		9.3474	0	1	248880	+		48508	21964	27813	27814	59289	59289					-0.042665290646709764
TLIYIQLSTSF	11	Unmodified	_TLIYIQLSTSF_					0	0	0		ENST00000465215.1_1_3:101713409-101713700:+|nuORF	ENST00000465215.1_1_3:101713409-101713700:+|nuORF	ENST00000465215.1_1_3:101713409-101713700:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.7555236816406	3	429.239461	1284.69655	0.061409	2.6359E-05	-1.9772	-0.0008487	-1.9158	-0.00082234	429.5728386703025	39.784	0.50991	39.876	39.69	40.2	0.09267					29	17	2	0	0	0	0.32774	1	8421	8421		13.519	3.7544	1	229180			48509	10791	27814	27815	59290	59290					0.06559392680287601
TLIYIQLSTSF	11	Unmodified	_TLIYIQLSTSF_					0	0	0		ENST00000465215.1_1_3:101713409-101713700:+|nuORF	ENST00000465215.1_1_3:101713409-101713700:+|nuORF	ENST00000465215.1_1_3:101713409-101713700:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	429.239461	1284.69655	-0.04939	-2.12E-05	-2.3255	-0.0009982	-2.3749	-0.0010194	429.23847727973447	39.735	0.38751	39.835	39.622	40.01	0.099407	-0.04509	-0.00029366	NaN	13.519	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126910			48510	10791	27814	27815							0.06559392680287601
TLKATFTTLLQ	11	Unmodified	_TLKATFTTLLQ_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.86376953125	2	618.863546	1235.71254	0.3341	0.00020676	-0.15087	-9.337E-05	0.18323	0.00011339	618.863415794904	53.912	0.91774	53.902	53.611	54.529	-0.0096054					74	32	4	0	0	0	0.41288	1	12741	12741		9.544	2.4423	1	1361600			48511	5256	27815	27816	59291	59291					0.1041109891718861
TLKEKKENIL	10	Unmodified	_TLKEKKENIL_					0	0	0			REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	REV__nc|ENSG00000138182|Q96Q89-4|KIF20B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2178955078125	3	405.915089	1214.72344	-0.10507	-4.2649E-05	-0.1399	-5.6788E-05	-0.24497	-9.9437E-05	405.91493168170257	42.934	0.38378	43.019	42.806	43.19	0.085197					19	13	2	0	0	0	0.31911	1	9348	9348		1.9064	0.31409	1	126080	+		48512	15910	27816	27817	59292	59292					0.12466501291464738
TLKHRDYWHRH	11	Unmodified	_TLKHRDYWHRH_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2489624023438	3	516.935881	1547.78581	0.17577	9.0864E-05	-1.3956	-0.00072142	-1.2198	-0.00063056	516.9350488351023	23.477	0.33494	23.477	23.308	23.643	0					17	11	2	0	0	0	0.33347	1	3447	3447		0.45452	0	1	60390	+		48513	18519	27817	27818	59293	59293					0.033830852030177994
TLKKTTNPA	9	Unmodified	_TLKKTTNPA_					0	0	0		Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|75|3|sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|75|3|sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|75|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2870178222656	2	487.287474	972.560395	-0.028173	-1.3728E-05	-0.41728	-0.00020333	-0.44545	-0.00021706	487.28712046155164	12.747	0.6319	12.647	12.292	12.924	-0.099291					38	21	2	0	0	0	0.25706	1	226	226		6.7232	0	1	106230			48514	12386	27818	27819	59294	59294					0.0730174296027144
TLKNINIK	8	Unmodified	_TLKNINIK_					0	0	0		ENSG00000164659|ENST00000450689|ELAPOR2;nc|ENSG00000164659|A8MWY0-3|ELAPOR2;nc|ENSG00000164659|A8MWY0-2|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.8210754394531	2	472.300384	942.586216	0.020384	9.6272E-06	-0.059944	-2.8312E-05	-0.039561	-1.8685E-05	472.30013029889466	24.316	0.38289	24.316	24.134	24.517	0					18	12	2	0	0	0	0.344	1	3767	3767		2.5775	0	1	43397			48515	5862	27819	27820	59295	59295					0.11262637202548831
TLKPIILN	8	Unmodified	_TLKPIILN_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2690734863281	2	456.299853	910.585153	0.075311	3.4365E-05	2.8586	0.0013044	2.9339	0.0013387	456.30099789785646	40.135	0.31258	40.135	39.914	40.226	0					15	10	2	0	0	0	0.34218	1	8515	8515		9.3474	0	1	93167			48516	2855	27820	27821	59296	59296					0.1262842283366581
TLKQIKGTV	9	Unmodified	_TLKQIKGTV_					0	0	0			REV__nc|ENSG00000127616|P51532-5|SMARCA4	REV__nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.794921875	2	494.313492	986.612431	0.42786	0.0002115	0.018644	9.2162E-06	0.4465	0.00022071	494.31355591160474	51.819	0.32771	51.867	51.786	52.113	0.048023					13	11	2	0	0	0	0.21389	1	12124	12124		19.257	0	1	185340	+		48517	15348	27821	27822	59297	59297					0.11858906374050093
TLKQNHIKV	9	Unmodified	_TLKQNHIKV_					0	0	0		LTR64_dup121|chr6:30372934-30373453:-|1.2445045347204733|0.0001499607713119|13.02|391.0|33|2|anti-sense	LTR64_dup121|chr6:30372934-30373453:-|1.2445045347204733|0.0001499607713119|13.02|391.0|33|2|anti-sense	LTR64_dup121|chr6:30372934-30373453:-|1.2445045347204733|0.0001499607713119|13.02|391.0|33|2|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8318481445312	2	540.82984	1079.64513	0.54433	0.00029439	3.2594	0.0017628	3.8037	0.0020571	540.8325368674184	68.612	2.737	68.612	68.226	70.963	0					296	99	6	0	0	0	0.26612	1	17639	17639		13.906	0.39817	1	81383000			48518	12520	27822	27823	59298	59298					0.10849113496897189
TLKTKPPPKPM	11	Unmodified	_TLKTKPPPKPM_					0	0	0			REV__ENST00000512339.5_1_4:89777138-89859370:-|nuORF	REV__ENST00000512339.5_1_4:89777138-89859370:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8685302734375	2	619.370484	1236.72641	0.11984	7.4222E-05	-1.0492	-0.00064982	-0.92933	-0.0005756	619.3707405203077	91.712	1.9109	91.803	91.166	93.077	0.090675					275	137	3	0	0	0	0.46819	1	24237	24237		2.2828	0.63015	1	768030	+		48519	21816	27823	27824	59299	59299					0.11752053144618912
TLKVRFVAF	9	Unmodified	_TLKVRFVAF_					0	0	0			REV__ENSG00000075568|ENST00000186436|TMEM131	REV__ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3113403320312	2	540.831852	1079.64915	0.56179	0.00030383	0.29063	0.00015718	0.85242	0.00046102	540.8316902854809	89.622	0.43932	89.622	89.392	89.831	0					44	31	2	0	0	0	0.2451	1	23754	23754		15.847	7.2539	1	77269	+		48520	13815	27824	27825	59300	59300					0.11251202990615639
TLKVRFVAF	9	Unmodified	_TLKVRFVAF_					0	0	0			REV__ENSG00000075568|ENST00000186436|TMEM131	REV__ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2639770507812	2	540.831852	1079.64915	0.073993	4.0018E-05	1.4385	0.00077801	1.5125	0.00081802	540.8320759453067	101.46	0.31676	101.46	101.22	101.53	0					51	41	2	0	0	0	0.25938	1	27039	27039		1.8442	0	1	57176	+		48521	13815	27824	27825	59301	59301					0.11251202990615639
TLKVRFVAF	9	Unmodified	_TLKVRFVAF_					0	0	0			REV__ENSG00000075568|ENST00000186436|TMEM131	REV__ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2633666992188	2	540.831852	1079.64915	0.40162	0.00021721	0.076404	4.1322E-05	0.47803	0.00025853	540.8316823572394	94.568	0.13634	94.651	94.596	94.732	0.082779					16	10	2	0	0	0	0.25202	1	25219	25219		10.824	2.9138	1	69165	+		48522	13815	27824	27825	59302	59302					0.11251202990615639
TLKVRFVAF	9	Unmodified	_TLKVRFVAF_					0	0	0			REV__ENSG00000075568|ENST00000186436|TMEM131	REV__ENSG00000075568|ENST00000186436|TMEM131	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	540.831852	1079.64915	0.63478	0.00034331	0.12404	6.7085E-05	0.75882	0.00041039	540.8315778829789	94.591	0.28468	94.589	94.523	94.807	-0.0020142	-0.03088	1.2552E-05	NaN	10.824	40	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123910	+		48523	13815	27824	27825							0.11251202990615639
TLKYLAFK	8	Unmodified	_TLKYLAFK_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.7770080566406	2	492.299853	982.585153	0.37464	0.00018444	-3.294	-0.0016216	-2.9194	-0.0014372	492.2978416556424	38.661	0.29246	38.752	38.594	38.887	0.090881					14	10	2	0	0	0	0.3366	1	8086	8086		12.532	0	1	81187	+		48524	16784	27825	27826	59303	59303					0.09316422833649085
TLLAHFFIKF	10	Unmodified	_TLLAHFFIKF_					0	0	0		nc|ENSG00000183715|Q14982-3|OPCML;ENST00000529038.5_1_11:132290089-133402241:-|nuORF;ENSG00000183715|ENST00000524381|OPCML;nc|ENSG00000183715|Q14982|OPCML;nc|ENSG00000183715|Q14982-4|OPCML	nc|ENSG00000183715|Q14982-3|OPCML	nc|ENSG00000183715|Q14982-3|OPCML	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.8615112304688	2	618.860609	1235.70667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.317	1	94.315	93.815	94.815	-0.0020142								0	0	0	0.3814	1	25153	25153		3.2813	1.7994	1				48525	7392	27826	27827	59304	59304					0.09824045196160114
TLLAWDSSF	9	Unmodified	_TLLAWDSSF_					0	0	0			REV__nc|ENSG00000105339|A2RUS2-2|DENND3	REV__nc|ENSG00000105339|A2RUS2-2|DENND3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.1906127929688	2	520.258382	1038.50221	0.53148	0.00027651	-1.0412	-0.0005417	-0.50973	-0.00026519	520.2582479830098	72.896	0.46827	72.896	72.613	73.081	0					23	16	2	0	0	0	0.24311	1	18546	18546		16.942	0	1	106950	+		48526	14450	27827	27828	59305	59305					-0.015499386850024166
TLLGAKELYQ	10	Unmodified	_TLLGAKELYQ_					0	0	0			REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2848510742188	2	568.321514	1134.62847	-0.099874	-5.676E-05	3.5802	0.0020347	3.4803	0.0019779	568.3237741828193	27.774	0.879	27.762	27.16	28.039	-0.011562					47	30	2	0	0	0	0.31794	1	4703	4703		8.1555	1.4324	1	120390	+		48527	17329	27828	27829	59306	59306					0.06654567820260127
TLLGAKELYQ	10	Unmodified	_TLLGAKELYQ_					0	0	0			REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	568.321514	1134.62847	-0.042629	-2.4227E-05	2.8685	0.0016302	2.8258	0.001606	568.3230504918353	27.77	0.56183	27.77	27.474	28.036	0	0.022225	-0.00029496	NaN	8.1555	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127510	+		48528	17329	27828	27829							0.06654567820260127
TLLGAKELYQ	10	Unmodified	_TLLGAKELYQ_					0	0	0			REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	568.321514	1134.62847	0.037835	2.1502E-05	3.2593	0.0018523	3.2971	0.0018738	568.3230427895468	27.733	0.54266	27.712	27.464	28.006	-0.021412	-0.036311	0.00014925	NaN	8.1555	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125390	+		48529	17329	27828	27829							0.06654567820260127
TLLGNLLVI	9	Unmodified	_TLLGNLLVI_					0	0	0		nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.31268310546875	2	478.312961	954.611368	0.26029	0.0001245	-0.13757	-6.5801E-05	0.12273	5.8701E-05	478.3128396540566	70.761	2.1432	70.822	70.434	72.577	0.060783					153	77	5	0	0	0	0.20626	1	18075	18075		22.736	0	1	7491300			48530	12730	27829	27830	59307	59307					0.13224692005132965
TLLGPPPI	8	Unmodified	_TLLGPPPI_					0	0	0			REV__ENST00000429344.6_1_19:3610667-3611147:-|nuORF	REV__ENST00000429344.6_1_19:3610667-3611147:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.2276611328125	2	404.252372	806.49019	-0.012649	-5.1133E-06	0.37967	0.00015348	0.36703	0.00014837	404.25238676919616	72.222	0.91779	72.222	71.937	72.855	0					54	33	2	0	0	0	0.34092	1	18574	18574		8.5933	0	1	609250	+		48531	20928	27830	27831	59308	59308					0.0792048936248193
TLLHQLLALE	10	Unmodified	_TLLHQLLALE_					0	0	0		ENST00000522002.5_1_8:134060928-134061024:-|nuORF	ENST00000522002.5_1_8:134060928-134061024:-|nuORF	ENST00000522002.5_1_8:134060928-134061024:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8428344726562	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.21	1	119.21	118.71	119.71	0								0	0	0	0.37664	1	30769	30769		3.5965	0	1				48532	11497	27831	27832	59309	59309					0.10690847091291289
TLLIAIWVS	9	Unmodified	_TLLIAIWVS_					0	0	0			REV__ENSG00000257008|ENST00000582579|GPR142	REV__ENSG00000257008|ENST00000582579|GPR142	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3027038574219	2	508.312961	1014.61137	0.35434	0.00018012	-0.92766	-0.00047154	-0.57332	-0.00029143	508.3122762382903	86.762	3.9972	86.849	84.107	88.105	0.087097					259	169	3	0	0	0	0.22188	1	23059	23059		20.454	1.1966	1	1888400	+		48533	19257	27832	27833	59310	59310					0.10464692005143661
TLLLLRPG	8	Unmodified	_TLLLLRPG_					0	0	0			REV__ENST00000392001.6_1_2:238499158-238499395:-|nuORF	REV__ENST00000392001.6_1_2:238499158-238499395:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2490234375	2	441.792195	881.569838	0.2567	0.00011341	-0.24607	-0.00010871	0.010635	4.6983E-06	441.7920165576498	23.943	0.51482	23.904	23.681	24.196	-0.038927					29	17	2	0	0	0	0.34185	1	3682	3682		5.7604	0	1	95869	+		48534	20588	27833	27834	59311	59311					0.12431556036472102
TLLLLRPG	8	Unmodified	_TLLLLRPG_					0	0	0			REV__ENST00000392001.6_1_2:238499158-238499395:-|nuORF	REV__ENST00000392001.6_1_2:238499158-238499395:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	441.792195	881.569838	0.040351	1.7827E-05	-0.037356	-1.6504E-05	0.0029945	1.3229E-06	441.7920709020502	23.855	0.51771	23.855	23.616	24.134	0	-0.022947	3.135E-05	NaN	5.7604	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83389	+		48535	20588	27833	27834							0.12431556036472102
TLLLLRPG	8	Unmodified	_TLLLLRPG_					0	0	0			REV__ENST00000392001.6_1_2:238499158-238499395:-|nuORF	REV__ENST00000392001.6_1_2:238499158-238499395:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	441.792195	881.569838	0.065496	2.8936E-05	0.12051	5.3242E-05	0.18601	8.2178E-05	441.792148337879	23.948	0.56321	23.876	23.588	24.151	-0.072559	-0.0025931	0.00017084	NaN	5.7604	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67352	+		48536	20588	27833	27834							0.12431556036472102
TLLLQHLKRI	10	Unmodified	_TLLLQHLKRI_					0	0	0		ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	ENST00000497453.1_1_1:154524878-154531400:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.209716796875	3	412.271319	1233.79213	0.11587	4.777E-05	2.9618	0.0012211	3.0777	0.0012688	412.60646051486697	37.992	0.28541	38.09	37.981	38.266	0.097527					10	9	2	0	0	0	0.3213	1	7901	7901		1.9064	0	1	42753			48537	5480	27834	27835	59312	59312					0.18458210381845674
TLLLRTPLL	9	Unmodified	_TLLLRTPLL_					0	0	0			REV__ENST00000525250.5_1_11:820874-821186:+|nuORF	REV__ENST00000525250.5_1_11:820874-821186:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3470458984375	2	520.347335	1038.68012	0.48924	0.00025458	-0.7226	-0.000376	-0.23335	-0.00012143	520.3470748730383	71.873	2.2778	71.873	71.55	73.828	0					213	82	5	0	0	0	0.018449	1	18386	18386		66.457	13.053	1	15966000	+		48538	21949	27835	27836	59313	59313					0.1623235630486306
TLLLTWAL	8	Unmodified	_TLLLTWAL_					0	0	0			REV__ENST00000466459.5_1_7:112097053-112108063:+|nuORF	REV__ENST00000466459.5_1_7:112097053-112108063:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7778625488281	2	465.786579	929.558604	0.21841	0.00010173	0.79897	0.00037215	1.0174	0.00047389	465.78688047751405	84.868	0.8357	84.868	84.555	85.39	0					48	31	2	0	0	0	0.42758	1	22218	22218		13.508	0	1	331240	+		48539	13369	27836	27837	59314	59314					0.09100733942329953
TLLLYKLK	8	Unmodified	_TLLLYKLK_					0	0	0			REV__nc|ENSG00000196912|Q8N2N9-4|ANKRD36B	REV__nc|ENSG00000196912|Q8N2N9-4|ANKRD36B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7480773925781	2	496.331153	990.647754	0.23049	0.0001144	0.30938	0.00015355	0.53987	0.00026796	496.33113873257804	67.411	0.57924	67.394	67.148	67.727	-0.016296					33	19	2	0	0	0	0.34247	1	16983	16983		8.5933	0	1	271800	+		48540	18694	27837	27838	59315	59315					0.15205568901842526
TLLMLVIIY	9	Unmodified	_TLLMLVIIY_					0	0	0		ENSG00000181790|ENST00000517894|ADGRB1;ENST00000518820.1_1_8:143561046-143604069:+|nuORF	ENSG00000181790|ENST00000517894|ADGRB1	ENSG00000181790|ENST00000517894|ADGRB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.832763671875	2	539.832672	1077.65079	0.67923	0.00036667	-1.0465	-0.00056492	-0.36725	-0.00019825	539.8324407357493	84.787	1.7078	84.868	84.278	85.986	0.080887					169	66	4	0	0	0	0.32415	1	22291	22291		5.2307	0	1	1033500			48541	7249	27838	27839	59316	59316					0.11507075964368596
TLLNFTVTE	9	Unmodified	_TLLNFTVTE_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3214721679688	2	519.279315	1036.54408	0.35826	0.00018604	0.30702	0.00015943	0.66528	0.00034547	519.2793102403651	57.257	0.58297	57.339	57.044	57.627	0.082111					54	20	4	0	0	0	0.22596	1	13870	13870		10.824	0	1	874110			48542	2033	27839	27840	59317	59317					0.027266170035318282
TLLNRPTDP	9	Unmodified	_TLLNRPTDP_					0	0	0		GGCX|p.D614Wfs*7|1|0.08|ENSG00000115486|chr2:85550970-85550973|GGTC/-|frameshift_variant;ENSG00000115486|ENST00000233838|GGCX;ENST00000496962.1_1_2:85786016-85788551:-|nuORF	GGCX|p.D614Wfs*7|1|0.08|ENSG00000115486|chr2:85550970-85550973|GGTC/-|frameshift_variant	GGCX|p.D614Wfs*7|1|0.08|ENSG00000115486|chr2:85550970-85550973|GGTC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8253173828125	2	513.782556	1025.55056	0.3093	0.00015891	0.60718	0.00031196	0.91648	0.00047087	513.7828930615668	32.676	0.86325	32.732	32.478	33.341	0.055309					55	30	3	0	0	0	0.25066	1	6404	6404		7.2892	0	1	269290			48543	2652	27840	27841	59318	59318					0.03880554954912441
TLLPQPRLV	9	Unmodified	_TLLPQPRLV_					0	0	0			REV__ENST00000329117.9_1_1:156611886-156611988:+|nuORF	REV__ENST00000329117.9_1_1:156611886-156611988:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.321533203125	2	518.829309	1035.64407	0.1678	8.7058E-05	-0.097639	-5.0658E-05	0.070159	3.6401E-05	518.8291274855013	57.58	0.48947	57.562	57.17	57.659	-0.017197					24	17	2	0	0	0	0.24913	1	13913	13913		12.532	1.7076	1	234780	+		48544	20026	27841	27842	59319	59319					0.12766899127996112
TLLQRYVF	8	Unmodified	_TLLQRYVF_					0	0	0			REV__ENST00000593000.1_1_Y:21755200-21755542:+|nuORF	REV__ENST00000593000.1_1_Y:21755200-21755542:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3473510742188	2	520.300384	1038.58622	0.36175	0.00018822	0.2748	0.00014298	0.63654	0.00033119	520.3005725500452	71.053	1.4616	71.114	70.299	71.761	0.060783					72	52	2	0	0	0	0.31934	1	18224	18224		18.135	0	1	629460	+		48545	22577	27842	27843	59320	59320					0.06846637202556849
TLLREKSL	8	Unmodified	_TLLREKSL_					0	0	0			REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7720031738281	2	480.297842	958.581131	0.56873	0.00027316	-0.46388	-0.0002228	0.10485	5.0361E-05	480.29757993326353	50.014	0.48517	50.035	49.85	50.335	0.020691					30	17	2	0	0	0	0.32435	1	11540	11540		16.942	1.0951	1	293960	+		48546	17839	27843	27844	59321	59321					0.10018333339962737
TLLREKSL	8	Unmodified	_TLLREKSL_					0	0	0			REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	480.297842	958.581131	0.20696	9.9404E-05	-0.1884	-9.0489E-05	0.018561	8.915E-06	480.2977207629291	50.047	0.42352	50.047	49.843	50.267	0	-0.0043083	0.00015735	NaN	11.64	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362850	+		48547	17839	27843	27844							0.10018333339962737
TLLREKSL	8	Unmodified	_TLLREKSL_					0	0	0			REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	480.297842	958.581131	0.55476	0.00026645	-0.093257	-4.4791E-05	0.46151	0.00022166	480.29786388759874	50.027	0.52179	50.072	49.85	50.372	0.044891	0.020742	0.00024874	NaN	11.64	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325360	+		48548	17839	27843	27844							0.10018333339962737
TLLRPIAQK	9	Unmodified	_TLLRPIAQK_					0	0	0		Tigger1_dup3125|chr4:68946744-68948416:-|1.16044740011086|0.0637849449006259|4.19|511.0|8|1|sense	Tigger1_dup3125|chr4:68946744-68948416:-|1.16044740011086|0.0637849449006259|4.19|511.0|8|1|sense	Tigger1_dup3125|chr4:68946744-68948416:-|1.16044740011086|0.0637849449006259|4.19|511.0|8|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3472900390625	2	520.334759	1038.65496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.765	1	71.738	71.238	72.238	-0.027275								0	0	0	0.19013	1	18248	18248		25.399	8.457	1				48549	23395	27844	27845	59322	59322					0.13718301502285613
TLLSHPQQR	9	Unmodified	_TLLSHPQQR_					0	0	0		nc|ENSG00000092929|Q70J99-2|UNC13D;ENST00000591563.5_1_17:73836050-73840487:-|nuORF;ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D	nc|ENSG00000092929|Q70J99-2|UNC13D	nc|ENSG00000092929|Q70J99-2|UNC13D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.83203125	2	540.301447	1078.58834	0.48962	0.00026454	-2.2527	-0.0012171	-1.7631	-0.00095261	540.2999762516102	70.391	0.53363	70.452	70.096	70.63	0.060783					25	18	2	0	0	0	0.24289	1	17753	17753		18.146	2.2992	1	158790			48550	1429	27845	27846	59323	59323					0.05219065940377732
TLLSIGLTV	9	Unmodified	_TLLSIGLTV_					0	0	0			REV__ENSG00000100191|ENST00000266086|SLC5A4	REV__ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7894592285156	2	458.789318	915.564084	0.13979	6.4134E-05	0.0051606	2.3676E-06	0.14495	6.6501E-05	458.78930388405195	66.668	0.62552	66.668	66.396	67.022	0					51	21	3	0	0	0	0.027237	1	16707	16707		61.357	0	1	468920	+		48551	14166	27846	27847	59324	59324					0.10292412734133904
TLLSIGLTV	9	Unmodified	_TLLSIGLTV_					0	0	0			REV__ENSG00000100191|ENST00000266086|SLC5A4	REV__ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7892761230469	2	458.789318	915.564084	0.13402	6.1486E-05	0.025113	1.1522E-05	0.15913	7.3008E-05	458.78937400537995	66.564	0.57708	66.648	66.415	66.992	0.083832					49	20	3	0	0	0	0.015402	1	16657	16657		71.134	0	1	492110	+		48552	14166	27846	27847	59325	59325					0.10292412734133904
TLLSIGLTV	9	Unmodified	_TLLSIGLTV_					0	0	0			REV__ENSG00000100191|ENST00000266086|SLC5A4	REV__ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	458.789318	915.564084	0.13979	6.4134E-05	0.0051606	2.3676E-06	0.14495	6.6501E-05	458.78930388405195	66.668	0.62552	66.668	66.396	67.022	0	0.0081424	-1.8662E-05	NaN	71.134	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	468920	+		48553	14166	27846	27847							0.10292412734133904
TLLSIGLTV	9	Unmodified	_TLLSIGLTV_					0	0	0			REV__ENSG00000100191|ENST00000266086|SLC5A4	REV__ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	458.789318	915.564084	0.13402	6.1486E-05	0.025113	1.1522E-05	0.15913	7.3008E-05	458.78937400537995	66.564	0.57708	66.648	66.415	66.992	0.083832	-0.011948	-3.5336E-07	NaN	71.134	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	492110	+		48554	14166	27846	27847							0.10292412734133904
TLLSIGLTV	9	Unmodified	_TLLSIGLTV_					0	0	0			REV__ENSG00000100191|ENST00000266086|SLC5A4	REV__ENSG00000100191|ENST00000266086|SLC5A4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	458.789318	915.564084	0.048115	2.2075E-05	0.051156	2.347E-05	0.099271	4.5545E-05	458.7894392942785	66.677	0.65515	66.664	66.433	67.089	-0.013588	0.0038053	2.3543E-05	NaN	71.134	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	381160	+		48555	14166	27846	27847							0.10292412734133904
TLLSRRPLGH	10	Unmodified	_TLLSRRPLGH_					0	0	0		ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-4|MEI1	ENSG00000167077|ENST00000401548|MEI1	ENSG00000167077|ENST00000401548|MEI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3453369140625	2	575.346189	1148.67783	0.415	0.00023877	-2.6241	-0.0015098	-2.2091	-0.001271	575.3454592594685	88.398	2.6001	88.487	87.352	89.952	0.089195					247	141	4	0	0	0	0.38515	1	23285	23285		6.2058	2.2614	1	1377600			48556	6144	27847	27848	59326	59326					0.10943320619730912
TLLSRVRSS	9	Unmodified	_TLLSRVRSS_					0	0	0		ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8039245605469	2	509.803823	1017.59309	0.2828	0.00014417	0.10423	5.3136E-05	0.38703	0.00019731	509.8038035289292	76.309	3.1155	76.309	75.395	78.511	0					278	114	5	0	0	0	0.29176	1	19776	19776		10.074	10.074	1	9397900			48557	8141	27848	27849	59327	59327					0.08499950083148633
TLLSRVRSS	9	Unmodified	_TLLSRVRSS_					0	0	0		ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8040771484375	2	509.803823	1017.59309	0.22616	0.0001153	0.14385	7.3337E-05	0.37002	0.00018864	509.80383599795044	76.259	3.0687	76.313	75.455	78.523	0.053421					204	110	4	0	0	0	0.28674	2	20181	19753;20181		10.824	10.074	1	8134600			48558	8141	27848	27849	59328;59329	59329					0.08499950083148633
TLLSRVRSS	9	Unmodified	_TLLSRVRSS_					0	0	0		ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.803955078125	2	509.803823	1017.59309	0.44765	0.00022821	0.22145	0.0001129	0.6691	0.00034111	509.8037417538526	76.612	3.1368	76.581	75.342	78.479	-0.031479					358	115	5	0	0	0	0.29176	1	19534	19534		10.074	10.074	1	9050300			48559	8141	27848	27849	59330	59330					0.08499950083148633
TLLSSRVSR	9	Unmodified	_TLLSSRVSR_					0	0	0			REV__ENST00000242351.9_1_7:138794259-138794355:-|nuORF	REV__ENST00000242351.9_1_7:138794259-138794355:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8036804199219	2	509.803823	1017.59309	0.22616	0.0001153	0.14385	7.3337E-05	0.37002	0.00018864	509.80383599795044	76.259	3.0687	76.313	75.455	78.523	0.053421					204	110	4	0	0	0	0.28674	1	20098	20098		10.824	0	1	8134600	+		48560	19494	27849	27850	59331	59331					0.08499950083148633
TLLTLIWLL	9	Unmodified	_TLLTLIWLL_					0	0	0		ENST00000413658.6_1_7:99661853-99662162:-|nuORF	ENST00000413658.6_1_7:99661853-99662162:-|nuORF	ENST00000413658.6_1_7:99661853-99662162:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3006591796875	2	543.352086	1084.68962	0.14928	8.1112E-05	0.69773	0.00037911	0.84701	0.00046023	543.8537667925611	13.865	0.28338	13.865	13.74	14.024	0					21	9	3	0	0	0	0.26145	1	558	558		2.0598	0	1	138020			48561	10291	27850	27851	59332	59332					0.1506612459036205
TLLTNSFPF	9	Unmodified	_TLLTNSFPF_					0	0	0			REV__ENST00000452556.5_1_2:214162070-215102915:+|nuORF	REV__ENST00000452556.5_1_2:214162070-215102915:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3473510742188	2	520.276575	1038.5386	0.3626	0.00018865	-0.42153	-0.00021931	-0.058925	-3.0657E-05	520.2760910269122	71.111	1.0809	71.172	70.928	72.009	0.060776					45	38	2	0	0	0	0.21905	1	18224	18224		11.64	0	1	510640	+		48562	16234	27851	27852	59333	59333					0.020869382117098212
TLLTRAPP	8	Unmodified	_TLLTRAPP_					0	0	0		ENST00000606070.1_1_6:108278833-108279097:+|nuORF	ENST00000606070.1_1_6:108278833-108279097:+|nuORF	ENST00000606070.1_1_6:108278833-108279097:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.7798767089844	2	434.766178	867.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.165	1	40.265	39.765	40.765	0.099407								0	0	0	0.36336	1	8534	8534		8.5933	3.3626	1				48563	12293	27852	27853	59334	59334					0.07874392622704818
TLLVSQRSF	9	Unmodified	_TLLVSQRSF_					0	0	0			REV__ENSG00000164256|ENST00000296682|PRDM9	REV__ENSG00000164256|ENST00000296682|PRDM9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3159790039062	2	525.800749	1049.58694	0.55209	0.00029029	3.1666	0.001665	3.7187	0.0019553	525.8025507682601	62.455	0.3828	62.552	62.383	62.765	0.096985					19	13	2	0	0	0	0.25066	1	15359	15359		11.64	0	1	178870	+		48564	17142	27853	27854	59335	59335					0.06413431851638052
TLLVSQRSF	9	Unmodified	_TLLVSQRSF_					0	0	0			REV__ENSG00000164256|ENST00000296682|PRDM9	REV__ENSG00000164256|ENST00000296682|PRDM9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	525.800749	1049.58694	0.58518	0.00030769	3.3413	0.0017569	3.9265	0.0020645	525.8026872087476	62.614	0.37912	62.614	62.396	62.776	0	0.031036	6.4305E-05	NaN	11.64	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93474	+		48565	17142	27853	27854							0.06413431851638052
TLLVYALAF	9	Unmodified	_TLLVYALAF_					0	0	0			REV__nc|ENSG00000131480|O75106-2|AOC2	REV__nc|ENSG00000131480|O75106-2|AOC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7997131347656	2	505.799686	1009.58482	0.52669	0.0002664	-0.38386	-0.00019415	0.14283	7.2246E-05	505.7996056069444	84.406	1.7833	84.483	84.097	85.881	0.077095					196	69	5	0	0	0	0.30166	1	22356	22356		8.5933	0.68312	1	12101000	+		48566	15520	27854	27855	59336	59336					0.080410031138058
TLLVYLLQL	9	Unmodified	_TLLVYLLQL_					0	0	0			REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8638916015625	2	538.341718	1074.66888	0.62219	0.00033495	0.46395	0.00024977	1.0861	0.00058471	538.3416971172161	78.768	0.37756	78.827	78.605	78.983	0.058151					21	14	2	0	0	0	0.2451	1	20423	20423		15.847	0	1	65631	+		48567	14940	27855	27856	59337	59337					0.13453534210702855
TLMECELN	8	Unmodified	_TLMECELN_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7242126464844	2	476.709353	951.404154	0.25692	0.00012248	-0.96649	-0.00046073	-0.70957	-0.00033826	476.70905783988576	57.106	0.24969	57.184	56.983	57.233	0.078674					11	8	2	0	0	0	0.34046	1	13695	13695		14.582	0	1	104170			48568	2211	27856	27857	59338	59338					-0.07349206596870772
TLMEFMLVGFS	11	Unmodified	_TLMEFMLVGFS_					0	0	0			REV__ENSG00000071242|ENST00000265678|RPS6KA2	REV__ENSG00000071242|ENST00000265678|RPS6KA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.8115844726562	2	637.81161	1273.60867	0.53281	0.00033983	-0.29642	-0.00018906	0.23638	0.00015077	637.8112735276122	85.826	2.0719	85.826	85.098	87.17	0					150	80	2	0	0	0	0.46475	1	22826	22826		2.7352	0	1	396350	+		48569	13743	27857	27858	59339	59339					-0.01719267506337019
TLNILLYEA	9	Unmodified	_TLNILLYEA_					0	0	0		nc|ENSG00000110906|Q9H3F6-2|KCTD10;ENSG00000110906|ENST00000228495|KCTD10;nc|ENSG00000110906|Q9H3F6-3|KCTD10	nc|ENSG00000110906|Q9H3F6-2|KCTD10	nc|ENSG00000110906|Q9H3F6-2|KCTD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3108520507812	2	525.297507	1048.58046	0.35973	0.00018896	0.52291	0.00027468	0.88263	0.00046364	525.2977952480225	73.545	0.78313	73.599	73.335	74.119	0.053833					77	27	5	0	0	0	0.15763	1	18938	18938		29.841	4.8496	1	1964200			48570	2336	27858	27859	59340	59340					0.058114939002507526
TLNKLGKFISI	11	Unmodified	_TLNKLGKFISI_					0	0	0			REV__TLR8|p.T750Rfs*47|1|0.05|ENSG00000101916|chrX:12921288-12921289|-/GAGTAGTTTGTTTC|frameshift_variant	REV__TLR8|p.T750Rfs*47|1|0.05|ENSG00000101916|chrX:12921288-12921289|-/GAGTAGTTTGTTTC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2350158691406	3	411.923696	1232.74926	-0.22514	-9.2741E-05	0.62402	0.00025705	0.39888	0.00016431	411.9240042240348	38.436	0.30189	38.436	38.269	38.571	0					16	10	2	0	0	0	0.3322	1	7971	7971		4.7159	0.83959	1	87743	+		48571	14296	27859	27860	59341	59341					0.14219395533746138
TLNQMLNQ	8	Unmodified	_TLNQMLNQ_					0	0	0			REV__nc|ENSG00000171004|Q96MM7-2|HS6ST2	REV__nc|ENSG00000171004|Q96MM7-2|HS6ST2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.7667236328125	2	481.242209	960.469866	0.040842	1.9655E-05	-0.38625	-0.00018588	-0.34541	-0.00016623	481.2421433403102	25.151	0.90199	25.095	24.748	25.65	-0.055931					37	31	2	0	0	0	0.34131	1	4096	4096		12.532	0	1	47610	+		48572	17613	27860	27861	59342	59342					-0.011950493596486922
TLNQMLNQ	8	Unmodified	_TLNQMLNQ_					0	0	0			REV__nc|ENSG00000171004|Q96MM7-2|HS6ST2	REV__nc|ENSG00000171004|Q96MM7-2|HS6ST2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	481.242209	960.469866	-0.025375	-1.2212E-05	-1.9439	-0.0009355	-1.9693	-0.00094771	481.2413643859673	24.81	0.15324	24.778	24.709	24.862	-0.031408	-0.15839	-0.0011283	NaN	4.3292	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26429	+		48573	17613	27860	27861							-0.011950493596486922
TLPAPRLQG	9	Unmodified	_TLPAPRLQG_					0	0	0			REV__ENST00000606330.1_1_3:11653209-11653269:+|nuORF	REV__ENST00000606330.1_1_3:11653209-11653269:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.77362060546875	2	476.782359	951.550165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.285	1	34.352	33.852	34.852	0.066704								0	0	0	0.22933	1	6738	6738		13.042	0.80181	1		+		48574	22659	27861	27862	59343	59343					0.07245180025699938
TLPARNKLL	9	Unmodified	_TLPARNKLL_					0	0	0		nc|ENSG00000108509|O94983-6|CAMTA2	nc|ENSG00000108509|O94983-6|CAMTA2	nc|ENSG00000108509|O94983-6|CAMTA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.811279296875	2	513.326934	1024.63931	0.18723	9.6109E-05	0.051429	2.64E-05	0.23866	0.00012251	513.3268267378476	31.061	0.49862	31.061	30.862	31.361	0					36	17	3	0	0	0	0.25417	1	5748	5748		8.5933	1.304	1	247940			48575	12642	27862	27863	59344	59344					0.12798014985219197
TLPERQAK	8	Unmodified	_TLPERQAK_					0	0	0			REV__ENSG00000138592|ENST00000307179|USP8	REV__ENSG00000138592|ENST00000307179|USP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2914733886719	2	471.771991	941.529429	0.24265	0.00011447	-0.6844	-0.00032288	-0.44175	-0.00020841	471.77173701250706	29.758	0.39619	29.758	29.521	29.917	0					16	13	2	0	0	0	0.34337	1	5310	5310		5.2307	0	1	41071	+		48576	15932	27863	27864	59345	59345					0.05632589646040742
TLPGLLREQRD	11	Unmodified	_TLPGLLREQRD_					0	0	0		ENST00000585077.1_1_17:80397907-80398237:+|nuORF	ENST00000585077.1_1_17:80397907-80398237:+|nuORF	ENST00000585077.1_1_17:80397907-80398237:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.36572265625	2	649.364776	1296.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.681	1	97.674	97.174	98.174	-0.0068283								0	0	0	0.36137	1	26155	26155		5.7319	2.9967	1				48577	12099	27864	27865	59346	59346					0.07850947374822681
TLPKIVGRTKD	11	Unmodified	_TLPKIVGRTKD_					0	0	0		NCAPG|p.I307Kfs*2|1|0.36|ENSG00000109805|chr4:17817402-17817403|-/AA|frameshift_variant;ENSG00000109805|ENST00000251496|NCAPG	NCAPG|p.I307Kfs*2|1|0.36|ENSG00000109805|chr4:17817402-17817403|-/AA|frameshift_variant	NCAPG|p.I307Kfs*2|1|0.36|ENSG00000109805|chr4:17817402-17817403|-/AA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.27099609375	3	409.918834	1226.73467	-0.41152	-0.00016869	0.83681	0.00034302	0.42529	0.00017433	409.9191022570388	39.325	0.54074	39.325	39.104	39.644	0					33	19	2	0	0	0	0.33085	1	8369	8369		5.5233	0	1	116040			48578	2275	27865	27866	59347	59347					0.13037323385606214
TLPLPRLLS	9	Unmodified	_TLPLPRLLS_					0	0	0			REV__ENST00000595443.5_1_19:39327364-39327562:-|nuORF	REV__ENST00000595443.5_1_19:39327364-39327562:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.80548095703125	2	505.32386	1008.63317	0.039182	1.98E-05	-0.29112	-0.00014711	-0.25193	-0.00012731	505.3236054924033	65.192	0.75217	65.192	64.934	65.686	0					34	26	2	0	0	0	0.25066	1	16185	16185		11.64	0	1	197720	+		48579	22595	27866	27867	59348	59348					0.12919496753693238
TLPLRRKRTV	10	Unmodified	_TLPLRRKRTV_					0	0	0			REV__ENST00000470763.1_1_1:5936963-5940792:-|nuORF	REV__ENST00000470763.1_1_1:5936963-5940792:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.8959655761719	3	413.938451	1238.79352	0.51941	0.000215	-0.19663	-8.1393E-05	0.32278	0.00013361	413.93816292572393	20.585	0.52535	20.532	20.254	20.779	-0.052912					52	18	4	0	0	0	0.32051	1	2610	2610		3.8763	0	1	332990	+		48580	21352	27867	27868	59349	59349					0.1836784447057198
TLPPPSPQL	9	Unmodified	_TLPPPSPQL_					0	0	0			REV__nc|ENSG00000050628|P43115-12|PTGER3	REV__nc|ENSG00000050628|P43115-12|PTGER3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.2717590332031	2	475.271293	948.528032	0.29823	0.00014174	0.060025	2.8528E-05	0.35826	0.00017027	475.2711976657839	49.593	1.3881	49.637	49.073	50.461	0.044891					127	51	3	0	0	0	0.017391	1	11517	11517		68.081	5.508	1	1181900	+		48581	22884	27868	27869	59350	59350					0.05170955557275647
TLPSRVFHPAF	11	Unmodified	_TLPSRVFHPAF_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	635.7653198242188	2	636.348397	1270.68224	0.48188	0.00030664	0.45754	0.00029115	0.93942	0.0005978	636.3486281733493	49.391	0.33375	49.423	49.268	49.602	0.032043					20	11	3	0	0	0	0.33073	1	11394	11394		7.1017	2.9122	1	113100			48582	5990	27869	27870	59351	59351					0.057727850426545047
TLPWDLWT	8	Unmodified	_TLPWDLWT_					0	0	0		nc|ENSG00000078053|P49418-2|AMPH;ENSG00000078053|ENST00000356264|AMPH	nc|ENSG00000078053|P49418-2|AMPH	nc|ENSG00000078053|P49418-2|AMPH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.816162109375	2	516.263468	1030.51238	0.075256	3.8852E-05	-0.20409	-0.00010536	-0.12883	-6.6512E-05	516.262874503996	17.455	0.52464	17.338	17.259	17.784	-0.11739					21	17	2	0	0	0	0.34218	1	1653	1653		9.3474	5.403	1	35019			48583	1101	27870	27871	59352	59352					-0.0016533095979411883
TLPWDLWT	8	Unmodified	_TLPWDLWT_					0	0	0		nc|ENSG00000078053|P49418-2|AMPH;ENSG00000078053|ENST00000356264|AMPH	nc|ENSG00000078053|P49418-2|AMPH	nc|ENSG00000078053|P49418-2|AMPH	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	516.263468	1030.51238	0.31959	0.00016499	0.081837	4.2249E-05	0.40143	0.00020724	516.2629087579138	17.36	0.38242	17.36	17.186	17.568	0	0.011112	0.00043973	NaN	9.3474	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25681			48584	1101	27870	27871							-0.0016533095979411883
TLPWDLWT	8	Unmodified	_TLPWDLWT_					0	0	0		nc|ENSG00000078053|P49418-2|AMPH;ENSG00000078053|ENST00000356264|AMPH	nc|ENSG00000078053|P49418-2|AMPH	nc|ENSG00000078053|P49418-2|AMPH	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	516.263468	1030.51238	0.21217	0.00010953	-0.65416	-0.00033772	-0.44199	-0.00022819	516.2629119252348	17.41	0.40888	17.35	17.241	17.65	-0.060429	0.00065594	-0.00032021	NaN	9.3474	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26772			48585	1101	27870	27871							-0.0016533095979411883
TLQAWPESGF	10	Unmodified	_TLQAWPESGF_					0	0	0		ENST00000268099.13_1_15:75136867-75137176:-|nuORF	ENST00000268099.13_1_15:75136867-75137176:-|nuORF	ENST00000268099.13_1_15:75136867-75137176:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2615966796875	2	568.274564	1134.53457	0.13777	7.829E-05	-0.49986	-0.00028406	-0.36209	-0.00020577	568.2740980735051	46.561	0.41025	46.561	46.35	46.76	0					34	14	3	0	0	0	0.3144	1	10451	10451		8.7454	0	1	897300			48586	9065	27871	27872	59353	59353					-0.0273115128200061
TLQDRRTR	8	Unmodified	_TLQDRRTR_					0	0	0			REV__ENST00000204679.8_1_16:1413113-1413224:+|nuORF	REV__ENST00000204679.8_1_16:1413113-1413224:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.280029296875	2	523.296696	1044.57884	0.66242	0.00034664	-0.31571	-0.00016521	0.34671	0.00018143	523.2968993638898	33.643	0.47178	33.643	33.393	33.865	0					29	16	3	0	0	0	0.20518	1	6574	6574		42.095	3.919	1	255420	+		48587	19399	27872	27873	59354	59354					0.05833297654839953
TLQIQLAK	8	Unmodified	_TLQIQLAK_					0	0	0		nc|ENSG00000198000|Q76FK4-2|NOL8;nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8;ENST00000538215.5_1_9:95082633-95087599:-|nuORF;ENST00000543985.5_1_9:95082633-95087599:-|nuORF	nc|ENSG00000198000|Q76FK4-2|NOL8	nc|ENSG00000198000|Q76FK4-2|NOL8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.16412353515625	2	457.78711	913.559667	-0.069381	-3.1762E-05	-0.67185	-0.00030757	-0.74123	-0.00033933	457.7868998541308	26.102	0.28225	26.063	25.871	26.153	-0.038671					11	9	2	0	0	0	0.33245	1	4280	4280		13.508	0	1	39120			48588	8023	27873	27874	59355	59355					0.09942948311231703
TLQIRQVL	8	Unmodified	_TLQIRQVL_					0	0	0		ENSG00000120328|ENST00000239450|PCDHB12	ENSG00000120328|ENST00000239450|PCDHB12	ENSG00000120328|ENST00000239450|PCDHB12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2556457519531	2	485.805834	969.597115	0.21945	0.00010661	-0.093442	-4.5395E-05	0.12601	6.1217E-05	485.8057588356938	27.169	0.61816	27.158	26.851	27.469	-0.01156					40	21	2	0	0	0	0.31088	1	4630	4630		28.487	5.3384	1	622070			48589	2938	27874	27875	59356	59356					0.11110039576851705
TLQKEKVKGVT	11	Unmodified	_TLQKEKVKGVT_					0	0	0		ENST00000488453.1_1_1:38483328-38489297:+|nuORF;ENSG00000183520|ENST00000373014|UTP11	ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENST00000488453.1_1_1:38483328-38489297:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2350158691406	3	410.918722	1229.73434	-0.13415	-5.5123E-05	-0.25637	-0.00010535	-0.39052	-0.00016047	410.9186877580023	38.266	0.3147	38.266	38.092	38.406	0					15	10	2	0	0	0	0.33122	1	7971	7971		7.0371	0.84524	1	81837			48590	7373	27875	27876	59357	59357					0.12865903665738188
TLQKKPLE	8	Unmodified	_TLQKKPLE_					0	0	0		nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP	nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	nc|ENSG00000283654|A0A1B0GTW7-3|CIROP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2716064453125	2	478.792392	955.570232	0.43812	0.00020977	-0.59776	-0.0002862	-0.15965	-7.6437E-05	478.7921839805588	40.414	0.8588	40.507	39.994	40.852	0.09267					47	30	2	0	0	0	0.34046	1	8714	8714		9.3474	0	1	252250			48591	8763	27876	27877	59358	59358					0.09066930965650499
TLQLLAVR	8	Unmodified	_TLQLLAVR_					0	0	0		SH3TC1|p.R238Sfs*38|1|0.33|ENSG00000125089|chr4:8217041-8217041|G/-|frameshift_variant;ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1;ENST00000512100.5_1_4:8211452-8220050:+|nuORF;ENST00000506360.5_1_4:8207046-8220006:+|nuORF	SH3TC1|p.R238Sfs*38|1|0.33|ENSG00000125089|chr4:8217041-8217041|G/-|frameshift_variant	SH3TC1|p.R238Sfs*38|1|0.33|ENSG00000125089|chr4:8217041-8217041|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7948913574219	2	457.295102	912.575651	0.034123	1.5604E-05	-0.70117	-0.00032064	-0.66705	-0.00030504	457.2951027161086	61.971	1.6803	61.971	61.437	63.117	0					201	62	5	0	0	0	0.37937	1	15165	15165		21.747	2.4897	1	9957200			48592	3191	27877	27878	59359	59359					0.11586654548125352
TLQLLAVR	8	Unmodified	_TLQLLAVR_					0	0	0		SH3TC1|p.R238Sfs*38|1|0.33|ENSG00000125089|chr4:8217041-8217041|G/-|frameshift_variant;ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1;ENST00000512100.5_1_4:8211452-8220050:+|nuORF;ENST00000506360.5_1_4:8207046-8220006:+|nuORF	SH3TC1|p.R238Sfs*38|1|0.33|ENSG00000125089|chr4:8217041-8217041|G/-|frameshift_variant	SH3TC1|p.R238Sfs*38|1|0.33|ENSG00000125089|chr4:8217041-8217041|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7945861816406	2	457.295102	912.575651	-0.22953	-0.00010496	-0.41252	-0.00018864	-0.64205	-0.00029361	457.29522534095975	61.846	1.7385	61.943	61.385	63.123	0.096985					175	63	4	0	0	0	0.37937	1	15140	15140		21.747	1.293	1	9843000			48593	3191	27877	27878	59360	59360					0.11586654548125352
TLQLLAVR	8	Unmodified	_TLQLLAVR_					0	0	0		SH3TC1|p.R238Sfs*38|1|0.33|ENSG00000125089|chr4:8217041-8217041|G/-|frameshift_variant;ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1;ENST00000512100.5_1_4:8211452-8220050:+|nuORF;ENST00000506360.5_1_4:8207046-8220006:+|nuORF	SH3TC1|p.R238Sfs*38|1|0.33|ENSG00000125089|chr4:8217041-8217041|G/-|frameshift_variant	SH3TC1|p.R238Sfs*38|1|0.33|ENSG00000125089|chr4:8217041-8217041|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7948303222656	2	457.295102	912.575651	-0.063295	-2.8944E-05	-0.64231	-0.00029372	-0.7056	-0.00032267	457.29513339968594	61.933	1.4827	61.924	61.377	62.86	-0.0085526					171	54	5	0	0	0	0.32038	1	15154	15154		28.487	8.0332	1	9408700			48594	3191	27877	27878	59361	59361					0.11586654548125352
TLQRESMI	8	Unmodified	_TLQRESMI_					0	0	0			REV__ENSG00000221866|ENST00000321063|PLXNA4	REV__ENSG00000221866|ENST00000321063|PLXNA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.268798828125	2	489.257859	976.501166	0.44556	0.00021799	-3.534	-0.001729	-3.0884	-0.001511	489.25596942913717	36.542	0.67038	36.624	36.331	37.001	0.082359					34	23	2	0	0	0	0.31934	1	7352	7352		18.135	0	1	101710	+		48595	19095	27878	27879	59362	59362					0.011975236744547146
TLQSFSKIQP	10	Unmodified	_TLQSFSKIQP_					0	0	0		ENST00000247295.4_1_9:134135977-134136163:-|nuORF	ENST00000247295.4_1_9:134135977-134136163:-|nuORF	ENST00000247295.4_1_9:134135977-134136163:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.27001953125	2	574.819138	1147.62372	0.14987	8.6151E-05	3.875	0.0022274	4.0249	0.0023136	574.8213328535196	23.082	0.40712	23.037	22.789	23.197	-0.044867					20	14	2	0	0	0	0.31581	1	3342	3342		11.495	2.7493	1	37906			48596	8904	27879	27880	59363	59363					0.055816836775193224
TLQSLTPTV	9	Unmodified	_TLQSLTPTV_					0	0	0			REV__ENSG00000205108|ENST00000378788|FAM205A	REV__ENSG00000205108|ENST00000378788|FAM205A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7555236816406	2	480.274032	958.533512	0.20741	9.9612E-05	-0.60154	-0.0002889	-0.39413	-0.00018929	480.273689371708	52.415	0.28406	52.415	52.239	52.523	0					11	9	2	0	0	0	0.10058	1	12275	12275		38.176	3.7738	1	284030	+		48597	18982	27880	27881	59364	59364					0.052586343490816034
TLQSVSLESL	10	Unmodified	_TLQSVSLESL_					0	0	0			REV__ENST00000425020.6_1_8:17132428-17137812:+|nuORF	REV__ENST00000425020.6_1_8:17132428-17137812:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2954711914062	2	538.795329	1075.5761	0.38212	0.00020589	2.5188	0.0013571	2.9009	0.001563	538.7966862645227	67.28	0.53544	67.358	67.04	67.576	0.078041					27	18	2	0	0	0	0.28434	1	16870	16870		25.399	3.6527	1	283090	+		48598	16724	27881	27882	59365	59365					0.0413398468667765
TLQVLRRLF	9	Unmodified	_TLQVLRRLF_					0	0	0		ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	ENSG00000088035|ENST00000263440|ALG6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.8355712890625	2	573.361308	1144.70806	0.49866	0.00028591	0.28936	0.00016591	0.78802	0.00045182	573.3611960428044	46.874	0.40907	46.874	46.703	47.112	0					20	13	2	0	0	0	0.25417	1	10651	10651		8.5933	1.8701	1	481240			48599	1314	27882	27883	59366	59366					0.14149679284946615
TLQVSVKKV	9	Unmodified	_TLQVSVKKV_					0	0	0			REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	REV__nc|ENSG00000147485|A1KZ92-2|PXDNL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.78466796875	2	501.321317	1000.62808	0.028253	1.4164E-05	0.35783	0.00017939	0.38609	0.00019355	501.3213139111153	35.467	0.49614	35.553	35.372	35.869	0.08625					19	17	2	0	0	0	0.24311	1	7053	7053		16.942	0	1	246550	+		48600	16389	27883	27884	59367	59367					0.1277919289109377
TLQWFDVK	8	Unmodified	_TLQWFDVK_					0	0	0		FBXO11|p.A486Pfs*31|1|0.33|ENSG00000138081|chr2:47823304-47823304|T/-|frameshift_variant	FBXO11|p.A486Pfs*31|1|0.33|ENSG00000138081|chr2:47823304-47823304|T/-|frameshift_variant	FBXO11|p.A486Pfs*31|1|0.33|ENSG00000138081|chr2:47823304-47823304|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7769165039062	2	518.776742	1035.53893	0.30243	0.00015689	0.38634	0.00020043	0.68878	0.00035732	518.7766784703728	69.287	1.5323	69.353	68.8	70.332	0.066048					72	54	2	0	0	0	0.27124	1	17507	17507		34.102	1.797	1	1108500			48601	12342	27884	27885	59368	59368					0.022583579315551106
TLQWFDVK	8	Unmodified	_TLQWFDVK_					0	0	0		FBXO11|p.A486Pfs*31|1|0.33|ENSG00000138081|chr2:47823304-47823304|T/-|frameshift_variant	FBXO11|p.A486Pfs*31|1|0.33|ENSG00000138081|chr2:47823304-47823304|T/-|frameshift_variant	FBXO11|p.A486Pfs*31|1|0.33|ENSG00000138081|chr2:47823304-47823304|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.77685546875	2	518.776742	1035.53893	0.2204	0.00011434	0.75846	0.00039347	0.97886	0.00050781	518.7766967291886	69.349	1.1369	69.326	69.026	70.163	-0.022087					80	40	4	0	0	0	0.27124	1	17536	17536		34.102	1.797	1	1026500			48602	12342	27884	27885	59369	59369					0.022583579315551106
TLQWRFFLL	9	Unmodified	_TLQWRFFLL_					0	0	0		ENST00000328405.6_1_3:19389358-19389454:+|nuORF	ENST00000328405.6_1_3:19389358-19389454:+|nuORF	ENST00000328405.6_1_3:19389358-19389454:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.58837890625	3	408.569365	1222.68626	0.049059	2.0044E-05	-1.3568	-0.00055433	-1.3077	-0.00053429	408.9029490806373	39.563	0.82169	39.663	39.1	39.922	0.099403					63	29	3	0	0	0	0.25756	1	8238	8238		2.086	0	1	177270			48603	9431	27885	27886	59370	59370					0.08382874536368945
TLRDGLIVT	9	Unmodified	_TLRDGLIVT_					0	0	0		ENSG00000214595|ENST00000356458|EML6;nc|ENSG00000214595|Q6ZMW3-2|EML6;ENST00000553320.5_2_14:89087611-89093274:-|nuORF;ENST00000490828.5_1_2:55184973-55193987:+|nuORF;nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5;ENST00000553281.5_1_14:89088194-89171927:-|nuORF	ENSG00000214595|ENST00000356458|EML6;nc|ENSG00000165521|Q05BV3|EML5	ENSG00000214595|ENST00000356458|EML6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2791748046875	2	494.295299	986.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.321	1	82.321	81.821	82.821	0								0	0	0	0.17683	1	21485	21485		28.487	0	1				48604	8386;5971	27886	27887	59371	59371					0.08222029477337855
TLRDIRYLN	9	Unmodified	_TLRDIRYLN_					0	0	0			REV__nc|ENSG00000138802|O95487-2|SEC24B	REV__nc|ENSG00000138802|O95487-2|SEC24B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.6679077148438	2	582.330205	1162.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.15	1	112.13	111.63	112.63	-0.015625								0	0	0	0.2672	1	29173	29173		0.52476	0	1		+		48605	15960	27887	27888	59372	59372					0.071039081459503
TLREEALLK	9	Unmodified	_TLREEALLK_					0	0	0		nc|ENSG00000049883|Q8WV60-2|PTCD2;nc|ENSG00000049883|Q8WV60-3|PTCD2;ENSG00000049883|ENST00000380639|PTCD2	nc|ENSG00000049883|Q8WV60-2|PTCD2	nc|ENSG00000049883|Q8WV60-2|PTCD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.296142578125	2	536.821681	1071.62881	0.28681	0.00015396	-0.77845	-0.00041789	-0.49164	-0.00026392	536.8215320917988	30.693	0.33594	30.72	30.53	30.866	0.027157					19	11	2	0	0	0	0.24993	1	5646	5646		13.042	0	1	237070			48606	658	27888	27889	59373	59373					0.09585987540117458
TLRFRVQRRQR	11	Unmodified	_TLRFRVQRRQR_					0	0	0			REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF	REV__ENST00000491407.1_1_7:100033387-100034048:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.974609375	3	505.974558	1514.90185	0.25614	0.0001296	0.14052	7.1098E-05	0.39666	0.0002007	505.974562452073	105.6	0.87701	105.6	105.29	106.17	0.0031738					384	126	4	0	0	0	0.47545	4	27955	27955;27983;28012;28039		1.3296	1.2564	1	1715600	+		48607	16919	27889	27890	59374;59375;59376;59377	59374					0.16499028773728242
TLRHKLTV	8	Unmodified	_TLRHKLTV_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.2535095214844	2	484.306001	966.597449	0.47875	0.00023186	-0.22247	-0.00010774	0.25627	0.00012412	484.3058305863826	44.674	0.68571	44.674	44.436	45.121	0					40	24	2	0	0	0	0.34131	1	10033	10033		7.9102	0	1	945760			48608	2985	27890	27891	59378	59378					0.11281459296696994
TLRHKLTV	8	Unmodified	_TLRHKLTV_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2535705566406	2	484.306001	966.597449	0.40979	0.00019846	-0.11108	-5.3795E-05	0.29871	0.00014467	484.3058562160309	44.582	0.60142	44.651	44.378	44.979	0.068569					37	21	2	0	0	0	0.34218	1	9941	9941		9.3474	0	1	843260			48609	2985	27890	27891	59379	59379					0.11281459296696994
TLRHKLTV	8	Unmodified	_TLRHKLTV_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.2535400390625	2	484.306001	966.597449	0.42888	0.00020771	-0.21184	-0.0001026	0.21704	0.00010511	484.30583356340213	44.59	0.65372	44.665	44.389	45.042	0.07505					38	23	2	0	0	0	0.3366	1	9928	9928		7.9102	0	1	910800			48610	2985	27890	27891	59380	59380					0.11281459296696994
TLRKPEAL	8	Unmodified	_TLRKPEAL_					0	0	0		nc|ENSG00000121236|Q9C030-3|TRIM6;TRIM6|p.G370Mfs*38|1|0.29|ENSG00000121236|chr11:5610982-5610986|GGGGG/-|frameshift_variant;nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6;ENST00000481603.1_1_11:5626782-5632007:+|nuORF	nc|ENSG00000121236|Q9C030-3|TRIM6	nc|ENSG00000121236|Q9C030-3|TRIM6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.74017333984375	2	464.284734	926.554916	0.078602	3.6494E-05	-0.28734	-0.00013341	-0.20874	-9.6915E-05	464.28453737921154	38.132	0.47201	38.223	38.011	38.483	0.090881					29	16	2	0	0	0	0.33293	1	7892	7892		10.074	0	1	366170			48611	2991	27891	27892	59381	59381					0.08870064168456793
TLRMVLAI	8	Unmodified	_TLRMVLAI_					0	0	0		ENST00000368007.8_1_1:161087910-161088000:+|nuORF;ENST00000479266.5_1_1:161087910-161088985:+|nuORF;ENST00000496768.5_1_1:161087910-161088985:+|nuORF;ENST00000368009.6_1_1:161087910-161088985:+|nuORF	ENST00000368007.8_1_1:161087910-161088000:+|nuORF	ENST00000368007.8_1_1:161087910-161088000:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.27734375	2	458.786056	915.557558	-0.18569	-8.5192E-05	0.46511	0.00021339	0.27942	0.0001282	458.78618135880123	12.605	0.35043	12.508	12.409	12.76	-0.096607					24	11	3	0	0	0	0.34185	1	162	162		10.183	4.423	1	317740			48612	9749	27892	27893	59382	59382					0.09640196301768356
TLRPDANI	8	Unmodified	_TLRPDANI_					0	0	0			REV__ENSG00000146242|ENST00000369750|TPBG	REV__ENSG00000146242|ENST00000369750|TPBG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2633056640625	2	450.250892	898.48723	0.18751	8.4426E-05	0.05098	2.2954E-05	0.23849	0.00010738	450.25081510451025	38.69	0.48731	38.78	38.455	38.942	0.090881					30	17	2	0	0	0	0.35375	1	8132	8132		24.674	5.2349	1	288250	+		48613	16337	27893	27894	59383	59383					0.03392614237657199
TLRPEAKL	8	Unmodified	_TLRPEAKL_					0	0	0			REV__ENSG00000124203|ENST00000371030|ZNF831	REV__ENSG00000124203|ENST00000371030|ZNF831	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.27227783203125	2	464.284734	926.554916	-0.33807	-0.00015696	-0.67267	-0.00031231	-1.0107	-0.00046927	464.2843248658458	13.782	0.36804	13.782	13.687	14.055	0					31	12	4	0	0	0	0.43302	1	528	528		11.64	1.5664	1	280780	+		48614	15220	27894	27895	59384	59384					0.08870064168456793
TLRPTWLS	8	Unmodified	_TLRPTWLS_					0	0	0			REV__ENSG00000186919|ENST00000334586|ZACN	REV__ENSG00000186919|ENST00000334586|ZACN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.76092529296875	2	487.276909	972.539266	0.12344	6.0147E-05	2.0374	0.00099278	2.1608	0.0010529	487.2776255430778	30.654	0.8438	30.681	30.448	31.292	0.027159					40	30	2	0	0	0	0.32435	1	5699	5699		11.64	0	1	153920	+		48615	18480	27895	27896	59385	59385					0.0518977765142381
TLRQAKGR	8	Unmodified	_TLRQAKGR_					0	0	0		ENST00000269214.9_1_18:19164274-19180609:-|nuORF	ENST00000269214.9_1_18:19164274-19180609:-|nuORF	ENST00000269214.9_1_18:19164274-19180609:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2856140136719	2	465.2856	928.556647	0.064692	3.01E-05	0.45458	0.00021151	0.51927	0.00024161	465.2858580799787	82.268	1.1963	82.268	81.586	82.782	0					60	45	2	0	0	0	0.46461	1	21505	21505		0.79363	0	1	353100			48616	9074	27896	27897	59386	59386					0.08951117977085232
TLRQRALFLHV	11	Unmodified	_TLRQRALFLHV_					0	0	0			REV__ENST00000419510.6_1_3:187454417-187454675:-|nuORF	REV__ENST00000419510.6_1_3:187454417-187454675:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.9432373046875	3	451.941973	1352.80409	0.16265	7.3506E-05	2.0296	0.00091725	2.1922	0.00099076	451.9431249177136	49.44	1.3917	49.485	48.768	50.16	0.044891					107	51	3	0	0	0	0.46842	1	11356	11356		2.2527	0.92309	1	520970	+		48617	20844	27897	27898	59387	59387					0.1417982712500816
TLRREVERSKP	11	Unmodified	_TLRREVERSKP_					0	0	0			REV__ENSG00000076513|ENST00000261739|ANKRD13A	REV__ENSG00000076513|ENST00000261739|ANKRD13A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.24249267578125	3	457.600275	1369.779	0.25755	0.00011785	2.3839	0.0010909	2.6414	0.0012087	457.6011657211977	43.627	0.21545	43.711	43.549	43.765	0.083996					12	7	2	0	0	0	0.3299	1	9604	9604		4.1166	1.6818	1	183750	+		48618	13830	27898	27899	59388	59388					0.10889727531775861
TLRTVLLSL	9	Unmodified	_TLRTVLLSL_					0	0	0		ENSG00000078140|ENST00000261427|UBE2K;nc|ENSG00000078140|P61086-3|UBE2K;nc|ENSG00000078140|P61086-2|UBE2K	ENSG00000078140|ENST00000261427|UBE2K	ENSG00000078140|ENST00000261427|UBE2K	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.80096435546875	2	508.329142	1014.64373	0.39148	0.000199	-0.91006	-0.00046261	-0.51858	-0.00026361	508.32864160708857	36.73	0.46328	36.818	36.626	37.09	0.08741					25	16	2	0	0	0	0.22674	1	7467	7467		22.736	3.4793	1	192060			48619	1104	27899	27900	59389	59389					0.1369947940813745
TLSDLRLEF	9	Unmodified	_TLSDLRLEF_					0	0	0			REV__NRAP|p.S1061Mfs*12|1|0.15|ENSG00000197893|chr10:113614843-113614843|C/-|frameshift_variant	REV__NRAP|p.S1061Mfs*12|1|0.15|ENSG00000197893|chr10:113614843-113614843|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.8264770507812	2	547.298039	1092.58152	0.48137	0.00026346	-1.5039	-0.00082308	-1.0225	-0.00055963	547.2974302051946	62.179	1.6407	62.17	61.272	62.913	-0.0085564					94	60	2	0	0	0	0.23235	1	15379	15379		21.537	10.737	1	753970	+		48620	18780	27900	27901	59390	59390					0.038937082691290925
TLSDLRLEF	9	Unmodified	_TLSDLRLEF_					0	0	0			REV__NRAP|p.S1061Mfs*12|1|0.15|ENSG00000197893|chr10:113614843-113614843|C/-|frameshift_variant	REV__NRAP|p.S1061Mfs*12|1|0.15|ENSG00000197893|chr10:113614843-113614843|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	547.298039	1092.58152	0.13749	7.525E-05	-3.1315	-0.0017139	-2.994	-0.0016386	547.7980466422496	61.676	0.51633	61.773	61.408	61.924	0.096989	-0.19876	-0.0013071	NaN	16.149	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193070	+		48621	18780	27900	27901							0.038937082691290925
TLSFHFPF	8	Unmodified	_TLSFHFPF_					0	0	0			REV__ENST00000315579.9_1_12:6603123-6604254:+|nuORF	REV__ENST00000315579.9_1_12:6603123-6604254:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7662353515625	2	498.252903	994.491253	0.49362	0.00024595	1.8006	0.00089718	2.2943	0.0011431	498.25332850019436	63.57	0.63296	63.57	63.256	63.889	0					35	22	3	0	0	0	0.28861	1	15751	15751		32.117	3.9437	1	142280	+		48622	19932	27901	27902	59391	59391					-0.006212962686163337
TLSHRPVWYL	10	Unmodified	_TLSHRPVWYL_					0	0	0		ENST00000396425.7_1_22:42390756-42390969:+|nuORF	ENST00000396425.7_1_22:42390756-42390969:+|nuORF	ENST00000396425.7_1_22:42390756-42390969:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.1792297363281	3	424.568024	1270.68224	0.086378	3.6673E-05	0.17237	7.3183E-05	0.25875	0.00010986	424.5679634207236	49.393	0.75866	49.393	49.164	49.923	0					50	27	3	0	0	0	0.3144	1	11372	11372		7.9454	2.0773	1	356320			48623	10115	27902	27903	59392	59392					0.057727850426545047
TLSHRPVWYL	10	Unmodified	_TLSHRPVWYL_					0	0	0		ENST00000396425.7_1_22:42390756-42390969:+|nuORF	ENST00000396425.7_1_22:42390756-42390969:+|nuORF	ENST00000396425.7_1_22:42390756-42390969:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.1794738769531	3	424.568024	1270.68224	-0.13149	-5.5828E-05	0.072199	3.0653E-05	-0.059295	-2.5175E-05	424.5680398497672	49.431	0.66634	49.476	49.21	49.877	0.044891					49	24	3	0	0	0	0.3144	1	11386	11386		7.9454	2.8979	1	340240			48624	10115	27902	27903	59393	59393					0.057727850426545047
TLSHRPVWYL	10	Unmodified	_TLSHRPVWYL_					0	0	0		ENST00000396425.7_1_22:42390756-42390969:+|nuORF	ENST00000396425.7_1_22:42390756-42390969:+|nuORF	ENST00000396425.7_1_22:42390756-42390969:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.17913818359375	3	424.568024	1270.68224	-0.13968	-5.9303E-05	0.38786	0.00016467	0.24819	0.00010537	424.56815544417793	49.385	0.62747	49.417	49.209	49.837	0.032043					37	22	2	0	0	0	0.3144	1	11439	11439		7.9454	2.162	1	332240			48625	10115	27902	27903	59394	59394					0.057727850426545047
TLSHVEAPLS	10	Unmodified	_TLSHVEAPLS_					0	0	0			REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1	REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.8087768554688	2	527.282389	1052.55022	0.12722	6.7081E-05	-0.3396	-0.00017906	-0.21238	-0.00011198	527.281734430291	28.058	0.46367	28.058	27.814	28.277	0					29	15	3	0	0	0	0.30079	1	4854	4854		20.454	1.1966	1	80265	+		48626	15013	27903	27904	59395	59395					0.026051352350577872
TLSHVEAPLS	10	Unmodified	_TLSHVEAPLS_					0	0	0			REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1	REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8087158203125	2	527.282389	1052.55022	0.13049	6.8804E-05	-0.17576	-9.2677E-05	-0.045274	-2.3872E-05	527.2815011466433	28.103	0.48553	28.099	27.793	28.278	-0.0042572					38	16	3	0	0	0	0.26638	1	4836	4836		30.637	8.8899	1	78595	+		48627	15013	27903	27904	59396	59396					0.026051352350577872
TLSHVEAPLS	10	Unmodified	_TLSHVEAPLS_					0	0	0			REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1	REV__nc|ENSG00000118495|Q9UM63-2|PLAGL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8086547851562	2	527.282389	1052.55022	0.1169	6.164E-05	-0.17244	-9.0925E-05	-0.05554	-2.9285E-05	527.2819109102995	28.053	0.47248	28.053	27.849	28.322	0.0004673					31	16	3	0	0	0	0.27337	1	4833	4833		22.736	4.5899	1	125380	+		48628	15013	27903	27904	59397	59397					0.026051352350577872
TLSIRPWP	8	Unmodified	_TLSIRPWP_					0	0	0			REV__nc|ENSG00000078295|Q08462-2|ADCY2	REV__nc|ENSG00000078295|Q08462-2|ADCY2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.21435546875	2	485.279452	968.544351	0.04591	2.2279E-05	-3.0499	-0.00148	-3.004	-0.0014578	485.2773953596434	28.398	0.57965	28.394	28.14	28.72	-0.0042572					29	20	2	0	0	0	0.34337	1	4907	4907		5.2307	0	1	107570	+		48629	13856	27904	27905	59398	59398					0.05882081514027959
TLSLFYGVN	9	Unmodified	_TLSLFYGVN_					0	0	0		nc|ENSG00000114487|Q86VD1-2|MORC1;ENSG00000114487|ENST00000232603|MORC1	nc|ENSG00000114487|Q86VD1-2|MORC1	nc|ENSG00000114487|Q86VD1-2|MORC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.8009948730469	2	507.26875	1012.52295	0.65934	0.00033446	-0.99906	-0.00050679	-0.33972	-0.00017233	507.77144077277234	36.794	0.10639	36.887	36.818	36.924	0.093018					5	3	2	0	0	0	0.25066	1	7514	7514		11.64	0	1	28266			48630	2569	27905	27906	59399	59399					0.017186516946594566
TLSLNIYQLL	10	Unmodified	_TLSLNIYQLL_					0	0	0			REV__nc|ENSG00000053900|Q9UJX5-2|ANAPC4	REV__nc|ENSG00000053900|Q9UJX5-2|ANAPC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3431396484375	2	589.344989	1176.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.291	1	98.291	97.791	98.791	0								0	0	0	0.37739	1	26296	26296		3.2813	0.28607	1		+		48631	13581	27906	27907	59400	59400					0.09415427371436635
TLSNKWREAL	10	Unmodified	_TLSNKWREAL_					0	0	0			REV__nc|ENSG00000168679|O15374-2|SLC16A4	REV__nc|ENSG00000168679|O15374-2|SLC16A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2178955078125	3	406.559417	1216.65642	-0.16984	-6.9051E-05	2.4974	0.0010153	2.3276	0.00094629	406.56035027176756	42.82	0.37836	42.905	42.704	43.083	0.085197					17	13	2	0	0	0	0.3179	1	9348	9348		3.3196	0.68841	1	179420	+		48632	17473	27907	27908	59401	59401					0.056758908003757824
TLSPHVET	8	Unmodified	_TLSPHVET_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;nc|ENSG00000038427|P13611-2|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.78790283203125	2	442.229625	882.444697	-0.62493	-0.00027636	0.47224	0.00020884	-0.15269	-6.7525E-05	442.22996693100777	34.347	0.30321	34.414	34.264	34.567	0.06636					16	10	2	0	0	0	0.34218	1	6791	6791		5.2307	0	1	52443			48633	591	27908	27909	59402	59402					-0.0012278089055826058
TLSQPVPAK	9	Unmodified	_TLSQPVPAK_					0	0	0		nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.Y241Afs*7|1|0.08|ENSG00000144824|chr3:111884797-111884798|-/GC|frameshift_variant	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.8006896972656	2	470.776742	939.538931	0.0025881	1.2184E-06	0.52058	0.00024508	0.52317	0.0002463	470.7770515500604	24.653	0.37046	24.622	24.426	24.796	-0.03141					20	12	2	0	0	0	0.25706	1	3765	3765		6.7232	1.9672	1	74154			48634	4616	27909	27910	59403	59403					0.0667435793156983
TLSQPVPAK	9	Unmodified	_TLSQPVPAK_					0	0	0		nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.Y241Afs*7|1|0.08|ENSG00000144824|chr3:111884797-111884798|-/GC|frameshift_variant	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	470.776742	939.538931	0.03123	1.4702E-05	0.28933	0.00013621	0.32056	0.00015091	470.7769923502332	24.61	0.39355	24.61	24.423	24.817	0	0.0041169	-6.8263E-05	NaN	10.074	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64264			48635	4616	27909	27910							0.0667435793156983
TLSQPVPAK	9	Unmodified	_TLSQPVPAK_					0	0	0		nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;PHLDB2|p.Y241Afs*7|1|0.08|ENSG00000144824|chr3:111884797-111884798|-/GC|frameshift_variant	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	470.776742	939.538931	0.12412	5.8433E-05	0.32279	0.00015196	0.44691	0.00021039	470.77691511548016	24.641	0.31831	24.585	24.43	24.748	-0.055931	-0.020462	-3.6763E-05	NaN	10.074	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56476			48636	4616	27909	27910							0.0667435793156983
TLSRDGVPLK	10	Unmodified	_TLSRDGVPLK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.286865234375	2	543.319306	1084.62406	0.77356	0.00042029	-1.61	-0.00087474	-0.83642	-0.00045445	543.3184939072605	45.583	0.51861	45.583	45.341	45.86	0					37	18	3	0	0	0	0.31267	1	10274	10274		10.074	0.6908	1	410960			48637	5186	27910	27911	59404	59404					0.08513103397376653
TLSVKRQY	8	Unmodified	_TLSVKRQY_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1;ENSG00000173662|ENST00000333172|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.27301025390625	2	497.787641	993.56073	0.1915	9.5325E-05	0.19548	9.7308E-05	0.38698	0.00019263	497.7877438405932	17.93	0.23683	17.813	17.603	17.84	-0.11739					10	7	2	0	0	0	0.34437	1	1756	1756		0.69038	0	1	16541			48638	6738	27911	27912	59405	59405					0.06369162680141471
TLSVKRQY	8	Unmodified	_TLSVKRQY_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1;ENSG00000173662|ENST00000333172|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	497.787641	993.56073	0.32304	0.00016081	0.31704	0.00015782	0.64008	0.00031862	497.7876334110525	17.681	0.33002	17.681	17.568	17.898	0	-0.065552	9.9743E-05	NaN	0.69038	11	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17716			48639	6738	27911	27912							0.06369162680141471
TLSVPASPR	9	Unmodified	_TLSVPASPR_					0	0	0		nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.56951904296875	2	464.266542	926.51853	-0.17139	-7.957E-05	3.2281	0.0014987	3.0567	0.0014191	464.2659900373264	27.347	0.9445	27.347	26.925	27.87	0					52	32	3	0	0	0	0.25622	1	4766	4766		7.2892	0	1	100970			48640	4616	27912	27913	59406	59406					0.052331872717559236
TLSYRNQTVLL	11	Unmodified	_TLSYRNQTVLL_					0	0	0		L1MC1_dup4818|chr5:157018062-157020331:+|1.2048631609900489|0.0442921674053822|4.77|515.0|37|2|sense	L1MC1_dup4818|chr5:157018062-157020331:+|1.2048631609900489|0.0442921674053822|4.77|515.0|37|2|sense	L1MC1_dup4818|chr5:157018062-157020331:+|1.2048631609900489|0.0442921674053822|4.77|515.0|37|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.8945007324219	3	436.58211	1306.7245	0.055727	2.4329E-05	-2.2976	-0.0010031	-2.2419	-0.00097878	436.91574412681535	52.262	0.3508	52.313	52.228	52.579	0.050575					15	12	2	0	0	0	0.32719	1	12256	12256		10.315	2.8382	1	267750			48641	12456	27913	27914	59407	59407					0.08340715660369824
TLTCLMSLE	9	Unmodified	_TLTCLMSLE_					0	0	0		ENST00000584531.1_1_18:14962171-14965804:+|nuORF	ENST00000584531.1_1_18:14962171-14965804:+|nuORF	ENST00000584531.1_1_18:14962171-14965804:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2337341308594	2	505.748479	1009.4824	0.16703	8.4476E-05	-0.07542	-3.8144E-05	0.091611	4.6332E-05	505.7484416164524	19.245	0.62486	19.129	18.919	19.544	-0.11592					34	21	2	0	0	0	0.33018	1	2211	2211		4.3292	0	1	94112			48642	12095	27914	27915	59408	59408					-0.021957740116249624
TLTCTERIL	9	Unmodified	_TLTCTERIL_					0	0	0			REV__ENST00000357720.8_1_19:13227157-13227549:-|nuORF	REV__ENST00000357720.8_1_19:13227157-13227549:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2747192382812	2	525.286617	1048.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.622	1	69.622	69.122	70.122	0								0	0	0	0.22666	1	17604	17604		13.906	0.86358	1		+		48643	20222	27915	27916	59409	59409					0.03634365880043333
TLTEIVHDS	9	Unmodified	_TLTEIVHDS_					0	0	0			REV__nc|ENSG00000197879|O00159-2|MYO1C	REV__nc|ENSG00000197879|O00159-2|MYO1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2579650878906	2	507.758746	1013.50294	0.040109	2.0366E-05	1.5664	0.00079537	1.6065	0.00081573	507.7593445755206	31.374	0.30613	31.417	31.237	31.543	0.042364					16	10	2	0	0	0	0.25066	1	5846	5846		11.64	2.2929	1	263650	+		48644	18775	27916	27917	59410	59410					-0.003271440359526423
TLTGEEEEE	9	Unmodified	_TLTGEEEEE_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3214111328125	2	518.719484	1035.42441	0.37179	0.00019285	-0.21055	-0.00010921	0.16124	8.3638E-05	518.7190177777416	58.283	0.9575	58.369	58.084	59.041	0.085621					77	33	4	0	0	0	0.25526	1	14064	14064		7.9102	0	1	1079400			48645	8011	27917	27918	59411	59411					-0.09188041131687896
TLTILYILT	9	Unmodified	_TLTILYILT_					0	0	0			REV__ENSG00000197786|ENST00000357377|OR5B17	REV__ENSG00000197786|ENST00000357377|OR5B17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3032836914062	2	525.825901	1049.63725	0.62184	0.00032698	0.67761	0.0003563	1.2994	0.00068328	525.8260890487104	56.624	0.61174	56.703	56.513	57.125	0.078671					34	22	2	0	0	0	0.25526	1	13714	13714		1.8442	0	1	348330	+		48646	18766	27918	27919	59412	59412					0.11441541456747473
TLTILYILT	9	Unmodified	_TLTILYILT_					0	0	0			REV__ENSG00000197786|ENST00000357377|OR5B17	REV__ENSG00000197786|ENST00000357377|OR5B17	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	525.825901	1049.63725	0.60089	0.00031597	0.95121	0.00050017	1.5521	0.00081614	525.8262292904727	56.827	0.50864	56.827	56.555	57.064	0	-0.025004	0.00017564	NaN	1.8442	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384190	+		48647	18766	27918	27919							0.11441541456747473
TLTMPIFTF	9	Unmodified	_TLTMPIFTF_					0	0	0		ENST00000479977.6_1_1:108152551-108231104:-|nuORF	ENST00000479977.6_1_1:108152551-108231104:-|nuORF	ENST00000479977.6_1_1:108152551-108231104:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.3443603515625	2	535.783179	1069.5518	0.51091	0.00027374	-1.8574	-0.00099515	-1.3465	-0.00072141	536.2834744478067	36.188	0.28029	36.27	36.117	36.398	0.082355					21	9	3	0	0	0	0.2451	1	7290	7290		15.847	3.3156	1	263900			48648	10998	27919	27920	59413	59413					0.019810529994401804
TLTNASSLQY	10	Unmodified	_TLTNASSLQY_					0	0	0			REV__ENSG00000283434|ENST00000637986|CSNKA2IP	REV__ENSG00000283434|ENST00000637986|CSNKA2IP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2968139648438	2	549.277303	1096.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.217	1	75.185	74.685	75.685	-0.031487								0	0	0	0.3392	1	19301	19301		19.362	0.10495	1		+		48649	19366	27920	27921	59414	59414					-0.004354724901759255
TLTPELLL	8	Unmodified	_TLTPELLL_					0	0	0		nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2	nc|ENSG00000184178|Q8WU76-2|SCFD2	nc|ENSG00000184178|Q8WU76-2|SCFD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2663269042969	2	450.276044	898.537535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.872	1	42.964	42.464	43.464	0.091362								0	0	0	0.36169	1	9358	9358		9.3474	0	1				48650	7433	27921	27922	59415	59415					0.08420723842812095
TLTRKAVYI	9	Unmodified	_TLTRKAVYI_					0	0	0		CON__Q3KUS7	CON__Q3KUS7	CON__Q3KUS7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2367553710938	2	532.826766	1063.63898	0.15686	8.3582E-05	-0.21794	-0.00011613	-0.061079	-3.2544E-05	532.8265432309859	17.18	0.37508	17.062	16.884	17.259	-0.11739					19	13	2	0	0	0	0.26251	1	1559	1559		0.6015	0	1	31106		+	48651	231	27922	27923	59416	59416					0.1097059526537123
TLTSFRPVL	9	Unmodified	_TLTSFRPVL_					0	0	0			REV__ENST00000233336.6_1_2:113288860-113289121:+|nuORF	REV__ENST00000233336.6_1_2:113288860-113289121:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8161010742188	2	517.305667	1032.59678	0.32966	0.00017054	-1.244	-0.00064355	-0.91438	-0.00047301	517.3046097197165	57.872	1.2093	57.957	57.738	58.947	0.085621					70	43	3	0	0	0	0.14961	1	14155	14155		41.84	14.956	1	616040	+		48652	19472	27923	27924	59417	59417					0.08178619856994374
TLTSFRPVL	9	Unmodified	_TLTSFRPVL_					0	0	0			REV__ENST00000233336.6_1_2:113288860-113289121:+|nuORF	REV__ENST00000233336.6_1_2:113288860-113289121:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8160400390625	2	517.305667	1032.59678	0.49266	0.00025485	-1.019	-0.00052714	-0.52636	-0.00027229	517.3046148170712	58.251	1.1512	58.234	57.793	58.945	-0.0172					67	41	3	0	0	0	0.16284	1	14210	14210		30.637	0	1	540500	+		48653	19472	27923	27924	59418	59418					0.08178619856994374
TLTSSAFLLF	10	Unmodified	_TLTSSAFLLF_					0	0	0		ENST00000490134.1_1_9:108337313-108359001:+|nuORF;FKTN|p.K278Rfs*6|1|0.22|ENSG00000106692|chr9:105615328-105615328|A/-|frameshift_variant;nc|ENSG00000106692|O75072-2|FKTN;ENSG00000106692|ENST00000357998|FKTN	ENST00000490134.1_1_9:108337313-108359001:+|nuORF	ENST00000490134.1_1_9:108337313-108359001:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.8211669921875	2	550.305332	1098.59611	0.54692	0.00030097	0.25408	0.00013982	0.801	0.00044079	550.3051469771794	53.896	0.24219	53.886	53.794	54.036	-0.0096054					11	8	2	0	0	0	0.11922	1	12769	12769		43.858	3.901	1	122040			48654	2096	27924	27925	59419	59419					0.05075780417291753
TLTSSLWLRKL	11	Unmodified	_TLTSSLWLRKL_					0	0	0			REV__ENST00000434353.6_1_X:148631062-148631386:+|nuORF	REV__ENST00000434353.6_1_X:148631062-148631386:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.5461730957031	3	439.934484	1316.78162	0.031285	1.3763E-05	-2.185	-0.00096124	-2.1537	-0.00094748	439.93344803216064	26.736	0.5046	26.697	26.433	26.938	-0.038671					29	17	2	0	0	0	0.33287	1	4465	4465		2.8433	0.21205	1	86345	+		48655	20981	27925	27926	59420	59420					0.13590182936741257
TLTTMAPYL	9	Unmodified	_TLTTMAPYL_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7647399902344	2	505.764986	1009.51542	0.27317	0.00013816	-2.7761	-0.001404	-2.5029	-0.0012659	505.76475492186756	68.252	1.1814	68.324	67.891	69.072	0.071938					112	43	4	0	0	0	0.1669	1	17104	17104		28.487	0.85804	1	720270			48656	7871	27926	27927	59421	59421					0.01104176102717247
TLTVLYMCLFI	11	Unmodified	_TLTVLYMCLFI_					0	0	0			REV__ENSG00000171505|ENST00000304880|OR1N1	REV__ENSG00000171505|ENST00000304880|OR1N1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.2532653808594	3	439.571277	1315.692	0.057316	2.5195E-05	3.0222	0.0013285	3.0795	0.0013537	439.5725162537826	16.427	0.26064	16.365	16.266	16.526	-0.062534					10	8	2	0	0	0	0.33326	1	1341	1341		1.4551	0.67859	1	16223	+		48657	17647	27927	27928	59422	59422					0.04678468941506253
TLTVSQAKGTK	11	Unmodified	_TLTVSQAKGTK_					0	0	0			REV__ENST00000598369.1_1_19:53284464-53284569:-|nuORF	REV__ENST00000598369.1_1_19:53284464-53284569:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.330322265625	2	567.32987	1132.64519	0.39199	0.00022239	-0.35593	-0.00020193	0.036058	2.0457E-05	567.3297854831022	82.276	3.0038	82.276	81.434	84.437	0					554	116	6	0	0	0	0.43149	1	21985	21985		7.1017	0.89594	1	21102000	+		48658	22617	27928	27929	59423	59423					0.08417068706239661
TLTVSQAKGTK	11	Unmodified	_TLTVSQAKGTK_					0	0	0			REV__ENST00000598369.1_1_19:53284464-53284569:-|nuORF	REV__ENST00000598369.1_1_19:53284464-53284569:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.330078125	2	567.32987	1132.64519	0.37678	0.00021376	-0.29089	-0.00016503	0.085891	4.8729E-05	567.3297156430638	82.255	3.9465	82.231	81.019	84.966	-0.02404					641	165	5	0	0	0	0.42762	1	21406	21406		7.609	7.609	1	21005000	+		48659	22617	27928	27929	59424	59424					0.08417068706239661
TLTVYAEL	8	Unmodified	_TLTVYAEL_					0	0	0			REV__ENSG00000156509|ENST00000428847|FBXO43	REV__ENSG00000156509|ENST00000428847|FBXO43	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.2552185058594	2	455.250026	908.485499	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.748	1	48.78	48.28	49.28	0.032043								0	0	0	0.22487	1	11169	11169		40.449	0	1		+		48660	16750	27929	27930	59425	59425					0.027595604290468145
TLTWAVPVSF	10	Unmodified	_TLTWAVPVSF_					0	0	0			REV__ENSG00000128699|ENST00000392349|ORMDL1	REV__ENSG00000128699|ENST00000392349|ORMDL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2642211914062	2	560.8055	1119.59645	0.49551	0.00027788	-3.5788	-0.002007	-3.0833	-0.0017292	561.3037516526798	79.307	1.8602	79.278	78.224	80.084	-0.028931					100	73	2	0	0	0	0.25875	1	20656	20656		19.257	0	1	196150	+		48661	15384	27930	27931	59426	59426					0.04143200137150416
TLTYYRRPW	9	Unmodified	_TLTYYRRPW_					0	0	0		CON__Q3MHN2;ENSG00000113600|ENST00000263408|C9	CON__Q3MHN2	CON__Q3MHN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.3153991699219	3	419.224257	1254.65094	0.15713	6.5873E-05	-0.27999	-0.00011738	-0.12285	-5.1504E-05	419.2240791554212	29.857	0.58381	29.869	29.56	30.143	0.012266					39	19	3	0	0	0	0.26127	1	5445	5445		1.0715	0	1	147420		+	48662	232	27931	27932	59427	59427					0.03380212008551098
TLVAALAERWN	11	Unmodified	_TLVAALAERWN_					0	0	0			REV__nc|ENSG00000138674|O94979-7|SEC31A	REV__nc|ENSG00000138674|O94979-7|SEC31A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3425903320312	2	622.343312	1242.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.04	1	106.05	105.55	106.55	0.0031738								0	0	0	0.37609	1	28093	28093		2.4985	0.84587	1		+		48663	15943	27932	27933	59428	59428					0.0604417731740341
TLVAHGELF	9	Unmodified	_TLVAHGELF_					0	0	0			REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408|CSMD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.78717041015625	2	493.768917	985.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.014	1	53.07	52.57	53.57	0.056255								0	0	0	0.19804	1	12486	12486		23.148	0	1		+		48664	22973	27933	27934	59429	59429					0.0299407141451411
TLVCFVSNLF	10	Unmodified	_TLVCFVSNLF_					0	0	0		ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA	ENST00000477541.1_1_6:32916643-32917850:-|nuORF	ENST00000477541.1_1_6:32916643-32917850:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2891845703125	2	571.79936	1141.58417	0.081903	4.6832E-05	-2.0042	-0.001146	-1.9223	-0.0010992	571.7982767028052	67.255	0.55281	67.239	67.009	67.562	-0.016304					32	18	3	0	0	0	0.31237	1	16802	16802		16.149	2.6412	1	241730			48665	8209	27934	27935	59430	59430					0.01903840402451351
TLVHRFPL	8	Unmodified	_TLVHRFPL_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.K2432Nfs*23|1|0.23|ENSG00000005810|chr13:77140155-77140155|T/-|frameshift_variant;MYCBP2|p.E3042Vfs*11|1|0.09|ENSG00000005810|chr13:77097915-77097916|-/GGGAAGA|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.31622314453125	2	491.795269	981.575986	0.45129	0.00022194	1.3941	0.00068561	1.8454	0.00090755	491.79567135517675	43.014	1.0929	43.099	42.78	43.873	0.085197					67	39	2	0	0	0	0.34131	1	9445	9445		7.9102	0	1	354250			48666	342	27935	27936	59431	59431					0.08446074267999393
TLVIKGLDA	9	Unmodified	_TLVIKGLDA_					0	0	0			REV__nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	REV__nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2856140136719	2	465.286943	928.559333	-0.056261	-2.6177E-05	-2.0174	-0.00093869	-2.0737	-0.00096486	465.286031545851	82.182	1.3944	82.251	81.53	82.924	0.068993					72	58	2	0	0	0	0.34536	1	21446	21446		2.0598	0	1	380520	+		48667	15474	27936	27937	59432	59432					0.09219528591358994
TLVIKGLDA	9	Unmodified	_TLVIKGLDA_					0	0	0			REV__nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	REV__nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	465.286943	928.559333	0.27856	0.00012961	-2.7476	-0.0012784	-2.469	-0.0011488	465.2855930790991	82.247	0.95138	82.223	81.813	82.764	-0.02404	-0.024484	-0.00020999	NaN	2.0598	65	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	470090	+		48668	15474	27936	27937							0.09219528591358994
TLVKDVFAF	9	Unmodified	_TLVKDVFAF_					0	0	0		ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3135375976562	2	520.294768	1038.57498	0.43175	0.00022464	-1.7206	-0.00089524	-1.2889	-0.0006706	520.293534933634	70.153	0.35153	70.153	69.999	70.35	0					19	12	2	0	0	0	0.22596	1	17803	17803		21.747	0	1	142620			48669	4089	27937	27938	59433	59433					0.05723815108422059
TLVKELGLF	9	Unmodified	_TLVKELGLF_					0	0	0			REV__ENSG00000152904|ENST00000282841|GGPS1	REV__ENSG00000152904|ENST00000282841|GGPS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.79986572265625	2	510.310418	1018.60628	0.32301	0.00016484	1.0817	0.00055202	1.4048	0.00071686	510.31096438149575	68.554	0.42509	68.535	68.284	68.709	-0.019157					23	14	2	0	0	0	0.1854	1	17307	17307		25.399	1.3787	1	379510	+		48670	16602	27938	27939	59434	59434					0.09772388142528143
TLVKFHRSR	9	Unmodified	_TLVKFHRSR_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3422241210938	2	572.340907	1142.66726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.05	1	114.05	113.55	114.55	0								0	0	0	0.264	1	29605	29605		1.8442	0	1				48671	4655	27939	27940	59435	59435					0.10163337965332175
TLVKFHRSR	9	Unmodified	_TLVKFHRSR_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.7919921875	2	572.340907	1142.66726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.32	1	116.32	115.82	116.82	0								0	0	0	0.264	1	30118	30118		1.8442	0	1				48672	4655	27939	27940	59436	59436					0.10163337965332175
TLVKFHRSR	9	Unmodified	_TLVKFHRSR_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.7910766601562	2	572.340907	1142.66726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.06	1	116.03	115.53	116.53	-0.022781								0	0	0	0.264	1	30077	30077		1.8442	0	1				48673	4655	27939	27940	59437	59437					0.10163337965332175
TLVLPVNI	8	Unmodified	_TLVLPVNI_					0	0	0		ENSG00000125522|ENST00000684052|NPBWR2	ENSG00000125522|ENST00000684052|NPBWR2	ENSG00000125522|ENST00000684052|NPBWR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7800598144531	2	434.778754	867.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.889	1	38.982	38.482	39.482	0.09267								0	0	0	0.37078	1	8151	8151		5.2307	0	1				48674	3215	27940	27941	59438	59438					0.10388447425293634
TLVNICLN	8	Unmodified	_TLVNICLN_					0	0	0		ENSG00000203995|ENST00000371528|ZYG11A	ENSG00000203995|ENST00000371528|ZYG11A	ENSG00000203995|ENST00000371528|ZYG11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.9150695800781	2	445.244221	888.473888	0.39677	0.00017666	-0.46585	-0.00020742	-0.069086	-3.076E-05	445.24392223101194	21.087	1.0313	21.087	20.622	21.654	0					50	35	2	0	0	0	0.34272	1	2739	2739		7.9102	0	1	395990			48675	8194	27941	27942	59439	59439					0.025190401340410062
TLVNPSDVE	9	Unmodified	_TLVNPSDVE_					0	0	0			REV__ENSG00000171940|ENST00000371471|ZNF217	REV__ENSG00000171940|ENST00000371471|ZNF217	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.8160400390625	2	487.245472	972.476391	0.038472	1.8745E-05	1.7615	0.00085829	1.8	0.00087703	487.24510412910075	28.449	0.11241	28.449	28.36	28.472	0					5	3	2	0	0	0	0.25622	1	4960	4960		7.2892	0	1	23652	+		48676	17680	27942	27943	59440	59440					-0.010948329272764568
TLVTHPILR	9	Unmodified	_TLVTHPILR_					0	0	0			REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF	REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.309814453125	2	525.326934	1048.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.652	1	96.652	96.152	97.152	0								0	0	0	0.26334	1	25830	25830		2.0598	0	1		+		48677	18234	27943	27944	59441	59441					0.11694014985209833
TLVTPRGR	8	Unmodified	_TLVTPRGR_					0	0	0		ENST00000375897.7_1_10:27529373-27529592:-|nuORF	ENST00000375897.7_1_10:27529373-27529592:-|nuORF	ENST00000375897.7_1_10:27529373-27529592:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2752990722656	2	450.274701	898.534849	0.39145	0.00017626	-0.41724	-0.00018787	-0.025788	-1.1612E-05	450.2744348406221	82.801	1.3799	82.801	82.358	83.738	0					151	51	4	0	0	0	0.45169	3	21589	21589;21632;21676		5.2307	0	1	11029000			48678	9915	27944	27945	59442;59443;59444	59442					0.08152313228515595
TLVTPRGR	8	Unmodified	_TLVTPRGR_					0	0	0		ENST00000375897.7_1_10:27529373-27529592:-|nuORF	ENST00000375897.7_1_10:27529373-27529592:-|nuORF	ENST00000375897.7_1_10:27529373-27529592:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2745666503906	2	450.274701	898.534849	0.28532	0.00012847	-0.28611	-0.00012883	-0.00079307	-3.571E-07	450.2744885807236	82.737	1.3467	82.81	82.452	83.799	0.073097					123	52	3	0	0	0	0.45169	3	21582	21582;21629;21677		5.2307	0	1	11782000			48679	9915	27944	27945	59445;59446;59447	59445					0.08152313228515595
TLVTPRGR	8	Unmodified	_TLVTPRGR_					0	0	0		ENST00000375897.7_1_10:27529373-27529592:-|nuORF	ENST00000375897.7_1_10:27529373-27529592:-|nuORF	ENST00000375897.7_1_10:27529373-27529592:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.27447509765625	2	450.274701	898.534849	0.36379	0.0001638	-0.26926	-0.00012124	0.094529	4.2564E-05	450.27447917864663	82.884	1.3226	82.864	82.396	83.719	-0.020584					161	53	5	0	0	0	0.45169	2	21618	21618;21666		5.2307	0	1	12647000			48680	9915	27944	27945	59448;59449	59448					0.08152313228515595
TLVVPPFAL	9	Unmodified	_TLVVPPFAL_					0	0	0			REV__ENST00000445816.5_1_15:44085996-44086706:+|nuORF	REV__ENST00000445816.5_1_15:44085996-44086706:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.785400390625	2	478.794404	955.574254	0.1676	8.0248E-05	0.24947	0.00011944	0.41707	0.00019969	478.794444558141	82.137	0.78187	82.206	81.992	82.774	0.068985					49	31	2	0	0	0	0.155	1	21463	21463		30.225	1.738	1	640560	+		48681	21076	27945	27946	59450	59450					0.09469020459368949
TLVWWWHL	8	Unmodified	_TLVWWWHL_					0	0	0			REV__nc|ENSG00000253649|A0A1B0GVH4|PRSS51	REV__nc|ENSG00000253649|A0A1B0GVH4|PRSS51	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8220825195312	2	570.803094	1139.59164	0.3768	0.00021508	-0.44443	-0.00025368	-0.067631	-3.8604E-05	570.8030312277762	43.73	0.43191	43.807	43.567	43.999	0.077515					24	15	2	0	0	0	0.33916	1	9627	9627		26.341	3.605	1	233050	+		48682	19225	27946	27947	59451	59451					0.027423607850323606
TLWEVLMLC	9	Unmodified	_TLWEVLMLC_					0	0	0		nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	nc|ENSG00000204580|Q08345-2|DDR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.2681884765625	2	554.282489	1106.55042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.042	1	33.042	32.542	33.542	0								0	0	0	0.24522	1	6365	6365		7.9102	0.62092	1				48683	8241	27947	27948	59452	59452					0.0014109563903730304
TLWHPRRQF	9	Unmodified	_TLWHPRRQF_					0	0	0			REV__ENST00000264449.14_2_4:42629066-42658940:-|nuORF	REV__ENST00000264449.14_2_4:42629066-42658940:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5499572753906	3	414.228113	1239.66251	0.45247	0.00018743	2.2149	0.00091748	2.6674	0.0011049	414.2290700157515	20.258	0.14155	20.148	20.046	20.188	-0.11003					5	4	2	0	0	0	0.26145	1	2485	2485		1.0715	0.10919	1	41643	+		48684	19638	27948	27949	59453	59453					0.052264538225244905
TLYASADEMKK	11	Unmodified	_TLYASADEMKK_					0	0	0			REV__nc|ENSG00000134516|Q92608-2|DOCK2	REV__nc|ENSG00000134516|Q92608-2|DOCK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.3292236328125	2	628.813196	1255.61184	0.43587	0.00027408	-1.5473	-0.00097294	-1.1114	-0.00069886	628.8119525344378	52.945	0.46178	52.945	52.6	53.062	0					22	16	2	0	0	0	0.12239	1	12431	12431		38.176	10.547	1	247710	+		48685	15680	27949	27950	59454	59454					-0.005743011279946586
TLYASADEMKK	11	Unmodified	_TLYASADEMKK_					0	0	0			REV__nc|ENSG00000134516|Q92608-2|DOCK2	REV__nc|ENSG00000134516|Q92608-2|DOCK2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	628.813196	1255.61184	0.43587	0.00027408	-1.5473	-0.00097294	-1.1114	-0.00069886	628.8119525344378	52.945	0.46178	52.945	52.6	53.062	0	0	0	NaN	38.176	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247710	+		48686	15680	27949	27950							-0.005743011279946586
TLYEVEELET	10	Unmodified	_TLYEVEELET_					0	0	0		ENST00000559491.1_1_14:24629014-24629779:+|nuORF;nc|ENSG00000092098|Q96EP0-2|RNF31;nc|ENSG00000092098|Q96EP0-3|RNF31;ENSG00000092098|ENST00000324103|RNF31	ENST00000559491.1_1_14:24629014-24629779:+|nuORF	ENST00000559491.1_1_14:24629014-24629779:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.8500366210938	2	613.295359	1224.57616	0.21668	0.00013289	0.67285	0.00041266	0.88954	0.00054555	613.2959362750628	32.838	0.98063	32.838	32.72	33.7	0					54	34	2	0	0	0	0.31267	1	6518	6518		14.838	4.0143	1	214260			48687	1419	27950	27951	59455	59455					-0.02714060104017335
TLYEVEELET	10	Unmodified	_TLYEVEELET_					0	0	0		ENST00000559491.1_1_14:24629014-24629779:+|nuORF;nc|ENSG00000092098|Q96EP0-2|RNF31;nc|ENSG00000092098|Q96EP0-3|RNF31;ENSG00000092098|ENST00000324103|RNF31	ENST00000559491.1_1_14:24629014-24629779:+|nuORF	ENST00000559491.1_1_14:24629014-24629779:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.8507080078125	2	613.295359	1224.57616	0.18306	0.00011227	0.791	0.00048512	0.97406	0.00059739	613.2962118371479	33.105	1.0387	33.16	32.498	33.537	0.054371					52	37	2	0	0	0	0.31629	1	6468	6468		10.074	3.3508	1	220380			48688	1419	27950	27951	59456	59456					-0.02714060104017335
TLYKARMEVWN	11	Unmodified	_TLYKARMEVWN_					0	0	0		nc|ENSG00000136827|O14656-2|TOR1A;ENST00000473084.1_1_9:132584712-132586364:-|nuORF	nc|ENSG00000136827|O14656-2|TOR1A	nc|ENSG00000136827|O14656-2|TOR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.9112243652344	3	470.911462	1409.71256	0.093307	4.394E-05	-0.20176	-9.5012E-05	-0.10845	-5.1073E-05	470.9111655215718	51.723	0.64073	51.723	51.382	52.023	0					37	23	2	0	0	0	0.46002	1	12080	12080		3.3557	0.92094	1	503750			48689	10902	27951	27952	59457	59457					0.024087756455401177
TLYLTIRQ	8	Unmodified	_TLYLTIRQ_					0	0	0			REV__ENSG00000137080|ENST00000380225|IFNA21	REV__ENSG00000137080|ENST00000380225|IFNA21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7545471191406	2	504.297842	1006.58113	0.28648	0.00014447	0.3474	0.0001752	0.63389	0.00031967	504.2979684366028	19.687	0.89531	19.571	19.005	19.9	-0.11592					42	30	2	0	0	0	0.34408	1	2397	2397		2.3027	2.3027	1	52198	+		48690	15845	27952	27953	59458	59458					0.07810333339944009
TLYLTIRQ	8	Unmodified	_TLYLTIRQ_					0	0	0			REV__ENSG00000137080|ENST00000380225|IFNA21	REV__ENSG00000137080|ENST00000380225|IFNA21	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	504.297842	1006.58113	0.32295	0.00016286	0.45369	0.00022879	0.77663	0.00039165	504.29802360203905	19.632	0.82724	19.576	18.989	19.816	-0.055691	0.0025811	5.4259E-05	NaN	2.3027	50	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52052	+		48691	15845	27952	27953							0.07810333339944009
TLYLVVAVAV	10	Unmodified	_TLYLVVAVAV_					0	0	0		ENSG00000261934|ENST00000573521|PCDHGA9;nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9	ENSG00000261934|ENST00000573521|PCDHGA9	ENSG00000261934|ENST00000573521|PCDHGA9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3138427734375	2	524.326068	1046.63758	0.64946	0.00034053	-0.94341	-0.00049466	-0.29395	-0.00015413	524.3254442097111	66.059	0.63014	66.142	65.942	66.572	0.083832					55	22	3	0	0	0	0.31482	1	16451	16451		3.9444	0	1	1059300			48692	8664	27953	27954	59459	59459					0.116129611766155
TLYSAVRPF	9	Unmodified	_TLYSAVRPF_					0	0	0		ENST00000555931.5_1_14:58714534-58727692:+|nuORF;ENST00000553665.5_1_14:58711638-58724717:+|nuORF;PSMA3|p.G133Wfs*13|1|0.31|ENSG00000100567|chr14:58257986-58257987|-/T|frameshift_variant;ENST00000554812.5_1_14:58714534-58734239:+|nuORF;ENST00000555743.1_1_14:58711638-58734239:+|nuORF;nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3	ENST00000555931.5_1_14:58714534-58727692:+|nuORF	ENST00000555931.5_1_14:58714534-58727692:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8117065429688	2	527.290017	1052.56548	0.58565	0.00030881	-0.33561	-0.00017696	0.25004	0.00013184	527.2899498164722	64.077	1.0998	64.169	63.588	64.688	0.09288					85	39	3	0	0	0	0.24311	1	16045	16045		16.942	4.7016	1	434630			48693	1607	27954	27955	59460	59460					0.04130046822888289
TLYVALFLAYF	11	Unmodified	_TLYVALFLAYF_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2345275878906	3	440.912797	1319.71656	-1.2722	-0.00056093	-0.52121	-0.00022981	-1.7934	-0.00079074	440.91271144125	34.588	0.71724	34.664	34.273	34.99	0.075306					44	25	3	0	0	0	0.33064	1	6934	6934		7.9454	2.162	1	161920	+		48694	23016	27955	27956	59461	59461					0.06949188410862916
TLYWRIYR	8	Unmodified	_TLYWRIYR_					0	0	0		nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8137817382812	2	585.824558	1169.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.771	1	98.764	98.264	99.264	-0.006897								0	0	0	0.37724	1	26463	26463		2.3027	0.24298	1				48695	6283	27956	27957	59462	59462					0.05653130842438259
TMFRGSWHRL	10	Unmodified	_TMFRGSWHRL_					0	0	0		ENST00000314891.10_1_15:34654487-34657250:-|nuORF	ENST00000314891.10_1_15:34654487-34657250:-|nuORF	ENST00000314891.10_1_15:34654487-34657250:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.88824462890625	3	430.888991	1289.64514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.083	1	27.071	26.571	27.571	-0.01156								0	0	0	0.37789	1	4546	4546		3.0723	1.8574	1				48696	9348	27957	27958	59463	59463					0.01190790225246019
TMGKIQYTVGD	11	Unmodified	_TMGKIQYTVGD_					0	0	0			REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF;REV__ENSG00000140876|ENST00000268533|NUDT7	REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.54229736328125	3	404.869151	1211.58562	-0.50378	-0.00020397	-1.4908	-0.00060356	-1.9945	-0.00080753	404.86847039033364	13.676	0.17277	13.577	13.466	13.638	-0.099291					7	5	2	0	0	0	0.33175	1	493	493		2.2527	0.51045	1	12198	+		48697	22336;16057	27958	27959	59464	59464					-0.011705702994731837
TMIFILIVICG	11	Unmodified	_TMIFILIVICG_					0	0	0			REV__ENSG00000256797|ENST00000535540|KLRF2	REV__ENSG00000256797|ENST00000535540|KLRF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.87689208984375	3	408.236118	1221.68652	0.20556	8.3918E-05	0.31934	0.00013037	0.52491	0.00021429	408.2362309221946	47.349	0.30491	47.349	47.244	47.549	0					22	10	3	0	0	0	0.3266	1	10775	10775		14.957	1.3423	1	192510	+		48698	19254	27959	27960	59465	59465					0.08454790149698965
TMIFILIVICG	11	Unmodified	_TMIFILIVICG_					0	0	0			REV__ENSG00000256797|ENST00000535540|KLRF2	REV__ENSG00000256797|ENST00000535540|KLRF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.8769226074219	3	408.236118	1221.68652	0.61838	0.00025244	0.44218	0.00018052	1.0606	0.00043296	408.23636602485044	47.377	0.37641	47.432	47.196	47.572	0.054371					15	13	2	0	0	0	0.32344	1	10720	10720		19.626	1.2529	1	197510	+		48699	19254	27959	27960	59466	59466					0.08454790149698965
TMIIFICLFV	10	Unmodified	_TMIIFICLFV_					0	0	0		ENST00000395246.5_1_5:130727872-130728007:+|nuORF	ENST00000395246.5_1_5:130727872-130728007:+|nuORF	ENST00000395246.5_1_5:130727872-130728007:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3340454101562	2	600.331981	1198.64941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.522	1	85.603	85.103	86.103	0.080887								0	0	0	0.37581	1	22461	22461		3.9444	0.3479	1				48700	10084	27960	27961	59467	59467					0.05803118603898838
TMLCLMKLYTK	11	Unmodified	_TMLCLMKLYTK_					0	0	0			REV__ENSG00000172689|ENST00000308287|MS4A10	REV__ENSG00000172689|ENST00000308287|MS4A10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.5611572265625	3	448.907784	1343.70152	0.1585	7.1154E-05	1.7838	0.00080076	1.9423	0.00087191	448.90856543647794	17.692	0.60313	17.631	17.269	17.872	-0.060429					40	20	3	0	0	0	0.33334	1	1681	1681		1.2148	0.588	1	44390	+		48701	17727	27961	27962	59468	59468					0.043419139553861896
TMLGKFYHF	9	Oxidation (M)	_TM(Oxidation (M))LGKFYHF_		TM(1)LGKFYHF		TM(62)LGKFYHF	0	0	1		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.2843017578125	2	580.283877	1158.5532	0.49167	0.00028531	2.4664	0.0014312	2.9581	0.0017165	580.2840408504854	46.796	0.59626	46.796	46.566	47.162	0					53	20	3	0	0	0	0.026579	2	10571	10571;10620		61.602	34.718	1	2088000			48702	5756	27962	27963	59469;59470	59469		683			-0.01973312911809444
TMLGKFYHF	9	Oxidation (M)	_TM(Oxidation (M))LGKFYHF_		TM(1)LGKFYHF		TM(89)LGKFYHF	0	0	1		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.2838134765625	2	580.283877	1158.5532	0.45842	0.00026602	2.7491	0.0015953	3.2076	0.0018613	580.2837385734891	46.606	0.68748	46.659	46.326	47.014	0.052574					62	24	3	0	0	0	0.0046246	2	10463	10463;10512		89.401	62.517	1	1737400			48703	5756	27962	27963	59471;59472	59471		683			-0.01973312911809444
TMLGKFYHF	9	Oxidation (M)	_TM(Oxidation (M))LGKFYHF_		TM(1)LGKFYHF		TM(100)LGKFYHF	0	0	1		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2842407226562	2	580.283877	1158.5532	0.28819	0.00016723	2.5218	0.0014634	2.81	0.0016306	580.2840067988977	46.63	0.92601	46.684	46.383	47.309	0.054371					76	32	3	0	0	0	0.003317	2	10471	10471;10520		99.755	61.781	1	1875100			48704	5756	27962	27963	59473;59474	59473		683			-0.01973312911809444
TMMFTFHKF	9	2 Oxidation (M)	_TM(Oxidation (M))M(Oxidation (M))FTFHKF_		TM(1)M(1)FTFHKF		TM(110)M(110)FTFHKF	0	0	2		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.8525085449219	3	407.852555	1220.53584	-0.16991	-6.9298E-05	0.16057	6.5487E-05	-0.0093426	-3.8104E-06	407.8526265396814	42.799	1.6285	42.799	42.33	43.959	0					183	59	5	0	0	0	0.0018978	2	9357	9307;9357		111.31	92.588	1	3414300			48705	7995	27963	27964	59475;59476	59476		872;873			-0.06560976509103966
TMMFTFHKF	9	2 Oxidation (M)	_TM(Oxidation (M))M(Oxidation (M))FTFHKF_		TM(1)M(1)FTFHKF		TM(97)M(97)FTFHKF	0	0	2		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.2754516601562	2	611.275195	1220.53584	0.21202	0.0001296	0.018406	1.1251E-05	0.23042	0.00014085	611.275232095912	42.803	0.84993	42.803	42.407	43.257	0					73	30	3	0	0	0	0.003673	1	9363	9363		96.936	77.679	1	611930			48706	7995	27963	27964	59477	59477		872;873			-0.06560976509103966
TMMFTFHKF	9	2 Oxidation (M)	_TM(Oxidation (M))M(Oxidation (M))FTFHKF_		TM(1)M(1)FTFHKF		TM(120)M(120)FTFHKF	0	0	2		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.8525085449219	3	407.852555	1220.53584	-0.015353	-6.2617E-06	-0.036936	-1.5064E-05	-0.052289	-2.1326E-05	407.85254496995077	42.383	1.3683	42.468	41.959	43.327	0.085197					148	49	4	0	0	0	0.0010993	3	9132	9132;9171;9216		121.5	102.78	1	3507200			48707	7995	27963	27964	59478;59479;59480	59478		872;873			-0.06560976509103966
TMMFTFHKF	9	2 Oxidation (M)	_TM(Oxidation (M))M(Oxidation (M))FTFHKF_		TM(1)M(1)FTFHKF		TM(86)M(86)FTFHKF	0	0	2		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.2752685546875	2	611.275195	1220.53584	0.29168	0.0001783	0.058107	3.552E-05	0.34979	0.00021382	611.2751591591137	42.415	0.82724	42.5	42.034	42.861	0.085197					69	29	3	0	0	0	0.0054984	1	9241	9241		86.332	70.485	1	711290			48708	7995	27963	27964	59481	59481		872;873			-0.06560976509103966
TMMFTFHKF	9	2 Oxidation (M)	_TM(Oxidation (M))M(Oxidation (M))FTFHKF_		TM(1)M(1)FTFHKF		TM(100)M(100)FTFHKF	0	0	2		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.8525390625	3	407.852555	1220.53584	0.043654	1.7804E-05	-0.1303	-5.3145E-05	-0.08665	-3.5341E-05	407.8525348212305	42.279	1.2951	42.371	41.929	43.224	0.091358					142	46	4	0	0	0	0.0027197	2	9110	9110;9156		104.48	86.111	1	3044800			48709	7995	27963	27964	59482;59483	59482		872;873			-0.06560976509103966
TMMFTFHKF	9	2 Oxidation (M)	_TM(Oxidation (M))M(Oxidation (M))FTFHKF_		TM(1)M(1)FTFHKF		TM(77)M(77)FTFHKF	0	0	2		ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	ENST00000478574.5_1_1:151956596-151958706:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.275390625	2	611.275195	1220.53584	0.30924	0.00018903	-0.0028342	-1.7325E-06	0.3064	0.0001873	611.2751524223805	42.286	0.81919	42.378	41.981	42.8	0.091362					69	28	3	0	0	0	0.011693	3	9211	9142;9211;9228		76.825	66.91	1	681010			48710	7995	27963	27964	59484;59485;59486	59485		872;873			-0.06560976509103966
TMRERRRLKKV	11	Unmodified	_TMRERRRLKKV_					0	0	0		ENSG00000111049|ENST00000228644|MYF5	ENSG00000111049|ENST00000228644|MYF5	ENSG00000111049|ENST00000228644|MYF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.636474609375	3	491.636666	1471.88817	0.4724	0.00023225	-0.63394	-0.00031167	-0.16154	-7.9421E-05	491.63625345681896	57.02	0.61183	57.02	56.823	57.435	0					55	22	4	0	0	0	0.46704	1	13737	13737		2.4348	0	1	828210			48711	2343	27964	27965	59487	59487					0.171100349502467
TNEPSYYIF	9	Unmodified	_TNEPSYYIF_					0	0	0			REV__INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	REV__INPP4B|p.L471*|1|0.37|ENSG00000109452|chr4:142160509-142160509|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2794189453125	2	567.261122	1132.50769	0.1644	9.3258E-05	0.59249	0.0003361	0.75689	0.00042935	567.2612479662158	69.681	0.62036	69.659	69.293	69.913	-0.022087					66	22	4	0	0	0	0.17277	1	17550	17550		27.629	0	1	583000	+		48712	14639	27965	27966	59488	59488					-0.05326259893195129
TNFLIDRNF	9	Unmodified	_TNFLIDRNF_					0	0	0		ENSG00000039987|ENST00000553030|BEST2	ENSG00000039987|ENST00000553030|BEST2	ENSG00000039987|ENST00000553030|BEST2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.8156127929688	2	570.29583	1138.57711	0.47258	0.00026951	-0.97906	-0.00055835	-0.50648	-0.00028884	570.2954512149536	64.256	1.8009	64.256	63.859	65.66	0					109	65	4	0	0	0	0.20626	1	15979	15979		22.736	3.4793	1	2154300			48713	600	27966	27967	59489	59489					0.013362438462309001
TNFRKNFCTL	10	Unmodified	_TNFRKNFCTL_					0	0	0		ENST00000361908.7_1_3:193343950-193353210:+|nuORF	ENST00000361908.7_1_3:193343950-193353210:+|nuORF	ENST00000361908.7_1_3:193343950-193353210:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.574951171875	3	415.213252	1242.61793	-0.26442	-0.00010979	-0.22425	-9.311E-05	-0.48867	-0.0002029	415.2129960185672	27.671	0.6682	27.671	27.146	27.814	0					41	22	3	0	0	0	0.31969	1	4764	4764		5.7834	1.3773	1	174770			48714	9702	27967	27968	59490	59490					0.006322618942249392
TNIQVLTTA	9	Unmodified	_TNIQVLTTA_					0	0	0		ENST00000478698.1_1_10:70101788-70101896:+|nuORF	ENST00000478698.1_1_10:70101788-70101896:+|nuORF	ENST00000478698.1_1_10:70101788-70101896:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7710876464844	2	480.771657	959.528761	0.41633	0.00020016	-1.3204	-0.00063482	-0.90408	-0.00043465	480.7710670532336	40.227	0.49897	40.327	40.118	40.617	0.099407					30	17	2	0	0	0	0.20881	1	8569	8569		21.537	0	1	390320			48715	10977	27968	27969	59491	59491					0.04737750206311375
TNIREFILER	10	Unmodified	_TNIREFILER_					0	0	0		ENST00000356347.3_1_4:247818-248640:+|nuORF	ENST00000356347.3_1_4:247818-248640:+|nuORF	ENST00000356347.3_1_4:247818-248640:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.9600830078125	3	430.910338	1289.70918	-0.90765	-0.00039112	1.217	0.00052442	0.30934	0.0001333	430.9113180283103	35.102	0.35713	35.179	35.06	35.418	0.077377					13	12	2	0	0	0	0.31825	1	7047	7047		9.2438	4.1963	1	133240			48716	9621	27969	27970	59492	59492					0.07591848863171435
TNIRLPTL	8	Unmodified	_TNIRLPTL_					0	0	0			REV__nc|ENSG00000154975|Q9NS85-2|CA10	REV__nc|ENSG00000154975|Q9NS85-2|CA10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.2723083496094	2	464.284734	926.554916	-0.36269	-0.00016839	-0.56491	-0.00026228	-0.9276	-0.00043067	464.2843771798933	13.854	0.33338	13.75	13.658	13.991	-0.10466					25	11	3	0	0	0	0.44569	1	546	546		7.2892	0	1	288410	+		48717	16686	27970	27971	59493	59493					0.08870064168456793
TNKHWLIRQAK	11	Unmodified	_TNKHWLIRQAK_					0	0	0		ENSG00000135677|ENST00000258145|GNS;nc|ENSG00000135677|P15586-2|GNS	ENSG00000135677|ENST00000258145|GNS	ENSG00000135677|ENST00000258145|GNS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.22869873046875	3	465.60536	1393.79425	-0.10004	-4.6578E-05	-0.029912	-1.3927E-05	-0.12995	-6.0505E-05	465.93964410537114	23.571	0.56536	23.498	23.313	23.879	-0.072559					30	19	2	0	0	0	0.33334	1	3605	3605		1.2148	0	1	76511			48718	3892	27971	27972	59494	59494					0.11310639119642474
TNKLRRTFS	9	Unmodified	_TNKLRRTFS_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2888793945312	2	561.822547	1121.63054	0.16157	9.0776E-05	-0.89095	-0.00050056	-0.72938	-0.00040978	561.8223288125736	17.616	0.22234	17.499	17.323	17.545	-0.11739					12	7	2	0	0	0	0.26168	1	1691	1691		1.8442	0	1	22669	+		48719	16705;23038	27972	27973	59495	59495					0.07459041348738538
TNKTHSNKFQ	10	Unmodified	_TNKTHSNKFQ_					0	0	0		nc|ENSG00000132958|Q6XPS3-6|TPTE2;nc|ENSG00000132958|Q6XPS3-4|TPTE2;nc|ENSG00000132958|Q6XPS3-5|TPTE2;nc|ENSG00000132958|Q6XPS3-3|TPTE2;nc|ENSG00000132958|Q6XPS3-2|TPTE2;nc|ENSG00000132958|Q6XPS3-7|TPTE2;ENSG00000132958|ENST00000697147|TPTE2	nc|ENSG00000132958|Q6XPS3-6|TPTE2	nc|ENSG00000132958|Q6XPS3-6|TPTE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	402.2065124511719	3	402.207155	1203.59963	-0.089939	-3.6174E-05	-0.59422	-0.000239	-0.68416	-0.00027517	402.20685966240984	17.28	0.73293	17.22	16.971	17.704	-0.060429					46	25	3	0	0	0	0.31899	1	1589	1589		7.4771	0	1	69605			48720	3682	27973	27974	59496	59496					0.005978432438496384
TNLGAIEVMD	10	Unmodified	_TNLGAIEVMD_					0	0	0			REV__ENSG00000243710|ENST00000372492|CFAP57	REV__ENSG00000243710|ENST00000372492|CFAP57	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.311279296875	2	531.760432	1061.50631	0.39572	0.00021043	2.6261	0.0013964	3.0218	0.0016069	532.2634667859991	51.818	0.4994	51.865	51.726	52.225	0.047733					21	17	2	0	0	0	0.22377	1	12202	12202		36.506	0	1	194090	+		48721	19195	27974	27975	59497	59497					-0.021982172535899736
TNLKQYKPL	9	Unmodified	_TNLKQYKPL_					0	0	0			REV__nc|ENSG00000177182|Q8IUQ0-2|CLVS1	REV__nc|ENSG00000177182|Q8IUQ0-2|CLVS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.8348388671875	2	552.824224	1103.63389	0.45966	0.00025411	-0.35504	-0.00019628	0.10462	5.7834E-05	552.8241145184378	30.398	0.25395	30.426	30.298	30.552	0.027946					12	8	2	0	0	0	0.25779	1	5531	5531		6.2058	2.0163	1	74849	+		48722	17978	27975	27976	59498	59498					0.08622291402753035
TNLKQYKPL	9	Unmodified	_TNLKQYKPL_					0	0	0			REV__nc|ENSG00000177182|Q8IUQ0-2|CLVS1	REV__nc|ENSG00000177182|Q8IUQ0-2|CLVS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	552.824224	1103.63389	0.41615	0.00023006	0.21194	0.00011716	0.62809	0.00034722	552.8242347106418	30.496	0.27051	30.496	30.282	30.553	0	0.034905	0.00013782	NaN	6.2058	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52744	+		48723	17978	27975	27976							0.08622291402753035
TNLLAALHR	9	Unmodified	_TNLLAALHR_					0	0	0		nc|ENSG00000163354|Q5T1A1-2|DCST2;ENSG00000163354|ENST00000368424|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2856140136719	2	504.801083	1007.58761	0.1225	6.1837E-05	-2.0281	-0.0010238	-1.9056	-0.00096195	504.8000024750269	18.782	0.73006	18.665	18.414	19.144	-0.11739					32	25	2	0	0	0	0.26188	1	1990	1990		1.6526	0.85899	1	44022			48724	5668	27976	27977	59499	59499					0.0841227129131994
TNLLAALHR	9	Unmodified	_TNLLAALHR_					0	0	0		nc|ENSG00000163354|Q5T1A1-2|DCST2;ENSG00000163354|ENST00000368424|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	504.801083	1007.58761	0.15216	7.6812E-05	-2.0522	-0.001036	-1.9001	-0.00095916	504.8000188338809	18.649	0.61983	18.649	18.332	18.952	0	-0.033526	1.6819E-07	NaN	1.6526	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45237			48725	5668	27976	27977							0.0841227129131994
TNLLAALHR	9	Unmodified	_TNLLAALHR_					0	0	0		nc|ENSG00000163354|Q5T1A1-2|DCST2;ENSG00000163354|ENST00000368424|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	nc|ENSG00000163354|Q5T1A1-2|DCST2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	504.801083	1007.58761	-0.0092185	-4.6535E-06	-2.1057	-0.001063	-2.1149	-0.0010676	504.8001630281363	18.791	0.53664	18.733	18.509	19.046	-0.058172	0.050748	-5.38E-05	NaN	1.6526	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41116			48726	5668	27976	27977							0.0841227129131994
TNLPEARVQ	9	Unmodified	_TNLPEARVQ_					0	0	0		ENSG00000197587|ENST00000360032|DMBX1;nc|ENSG00000197587|Q8NFW5|DMBX1	ENSG00000197587|ENST00000360032|DMBX1	ENSG00000197587|ENST00000360032|DMBX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7665405273438	2	514.28018	1026.54581	0.22422	0.00011531	3.2025	0.001647	3.4267	0.0017623	514.2816637104614	70.203	0.19939	70.181	70.018	70.217	-0.022087					10	6	2	0	0	0	0.23235	1	17766	17766		21.537	4.5947	1	105390			48727	7980	27977	27978	59500	59500					0.033596708121422125
TNLVEIEL	8	Unmodified	_TNLVEIEL_					0	0	0			REV__ENSG00000100104|ENST00000215917|SRRD	REV__ENSG00000100104|ENST00000215917|SRRD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.76043701171875	2	465.760758	929.506963	-0.05892	-2.7443E-05	0.81706	0.00038055	0.75814	0.00035311	465.7607096635129	30.757	0.80537	30.785	30.552	31.358	0.027946					37	28	2	0	0	0	0.33441	1	5676	5676		26.884	0	1	225890	+		48728	14162	27978	27979	59501	59501					0.039389454577644756
TNLVEIEL	8	Unmodified	_TNLVEIEL_					0	0	0			REV__ENSG00000100104|ENST00000215917|SRRD	REV__ENSG00000100104|ENST00000215917|SRRD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7611999511719	2	465.760758	929.506963	0.012752	5.9394E-06	0.55901	0.00026037	0.57176	0.0002663	465.76077821761726	30.742	0.43966	30.769	30.505	30.945	0.027157					24	15	2	0	0	0	0.33441	2	5665	5665;5682		26.884	0	1	234300	+		48729	14162	27978	27979	59502;59503	59502					0.039389454577644756
TNLVNKDSTR	10	Unmodified	_TNLVNKDSTR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.778564453125	2	574.306926	1146.5993	0.42509	0.00024413	2.4291	0.0013951	2.8542	0.0016392	574.308547337239	48.349	0.35081	48.349	48.205	48.556	0					18	11	2	0	0	0	0.31515	1	11091	11091		12.241	1.4167	1	173890			48730	5186	27979	27980	59504	59504					0.031864235239936534
TNMSLKEVSPV	11	Unmodified	_TNMSLKEVSPV_					0	0	0			REV__ENST00000512558.5_1_5:79729945-79747536:+|nuORF	REV__ENST00000512558.5_1_5:79729945-79747536:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	402.2065124511719	3	402.212918	1203.61692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.306	1	17.246	16.746	17.746	-0.060429								0	0	0	0.34127	1	1589	1589		5.5233	0.80737	1		+		48731	13521	27980	27981	59505	59505					0.023260027346623247
TNPELWQDF	9	Unmodified	_TNPELWQDF_					0	0	0			REV__ENST00000332118.10_1_11:126133397-126133748:-|nuORF	REV__ENST00000332118.10_1_11:126133397-126133748:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.8087158203125	2	575.264196	1148.51384	0.36168	0.00020806	0.28826	0.00016583	0.64994	0.00037389	575.2641706423854	37.217	0.40583	37.31	37.142	37.548	0.093014					24	14	2	0	0	0	0.25202	1	7629	7629		10.824	4.1008	1	260680	+		48732	20047	27981	27982	59506	59506					-0.0544774166166917
TNPFQPAPPA	10	Unmodified	_TNPFQPAPPA_					0	0	0		nc|ENSG00000063245|Q9Y6I3-3|EPN1;ENSG00000063245|ENST00000270460|EPN1;nc|ENSG00000063245|Q9Y6I3-1|EPN1	nc|ENSG00000063245|Q9Y6I3-3|EPN1	nc|ENSG00000063245|Q9Y6I3-3|EPN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7864990234375	2	520.263999	1038.51345	0.8706	0.00045294	0.71207	0.00037047	1.5827	0.00082341	520.2641403150155	50.685	0.70146	50.685	50.407	51.108	0					58	25	3	0	0	0	0.31165	1	11884	11884		10.824	0	1	1339700			48733	775	27982	27983	59507	59507					-0.0042711659086762666
TNPRDEPKKS	10	Unmodified	_TNPRDEPKKS_					0	0	0			REV__nc|ENSG00000055332|P19525-2|EIF2AK2	REV__nc|ENSG00000055332|P19525-2|EIF2AK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3059692382812	2	586.306926	1170.5993	0.083448	4.8926E-05	-0.51379	-0.00030124	-0.43034	-0.00025231	586.3067540752902	17.89	0.75162	17.773	17.515	18.267	-0.11739					68	25	4	0	0	0	0.41085	1	1738	1738		1.4819	0	1	563220	+		48734	13592	27983	27984	59508	59508					0.020824235239842892
TNQCIADIHCN	11	Unmodified	_TNQCIADIHCN_					0	0	0			REV__ENSG00000146197|ENST00000274938|SCUBE3	REV__ENSG00000146197|ENST00000274938|SCUBE3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.8840026855469	3	411.17799	1230.51214	-0.049338	-2.0287E-05	0.15811	6.5013E-05	0.10878	4.4726E-05	411.1781169324494	15.907	0.32526	15.794	15.514	15.839	-0.11335					13	10	2	0	0	0	0.33324	1	1113	1113		0.40827	0	1	17585	+		48735	16333	27984	27985	59509	59509					-0.0938944201357117
TNQKVPTQG	9	Unmodified	_TNQKVPTQG_					0	0	0			REV__nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	REV__nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2870178222656	2	486.759081	971.503609	-0.048969	-2.3836E-05	1.1212	0.00054577	1.0723	0.00052194	486.7594513084596	12.86	0.22606	12.761	12.643	12.869	-0.09929					10	7	2	0	0	0	0.26168	1	226	226		1.8442	0	1	27952	+		48736	13860	27985	27986	59510	59510					0.0167169540377472
TNQPKKHL	8	Unmodified	_TNQPKKHL_					0	0	0		HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|29|2|sense	HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|29|2|sense	HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|29|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.279296875	2	483.279983	964.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.06	1	85.141	84.641	85.641	0.080887								0	0	0	0.37078	1	22319	22319		5.2307	0	1				48737	12399	27986	27987	59511	59511					0.06172295882936396
TNRIYRRSNQW	11	Unmodified	_TNRIYRRSNQW_					0	0	0			REV__ENSG00000231256|ENST00000449302|CFAP97D1	REV__ENSG00000231256|ENST00000449302|CFAP97D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.78125	3	498.595524	1492.76474	0.2678	0.00013353	-1.2918	-0.00064406	-1.024	-0.00051054	498.5951389522448	26.453	0.23566	26.453	26.35	26.586	0					12	7	2	0	0	0	0.3325	1	4350	4350		4.1166	2.787	1	55369	+		48738	19132	27987	27988	59512	59512					0.03807075103509305
TNTIPHEV	8	Unmodified	_TNTIPHEV_					0	0	0		nc|ENSG00000141127|O60256-3|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2;nc|ENSG00000141127|O60256-4|PRPSAP2;ENST00000466106.1_1_17:18831958-18834008:+|nuORF	nc|ENSG00000141127|O60256-3|PRPSAP2	nc|ENSG00000141127|O60256-3|PRPSAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.77734375	2	455.735074	909.455596	0.050344	2.2943E-05	0.31653	0.00014426	0.36688	0.0001672	455.73523726692247	16.224	0.28463	16.161	16.066	16.351	-0.062532					13	9	2	0	0	0	0.34313	1	1317	1317		6.7232	0	1	19092			48739	4357	27988	27989	59513	59513					-0.0027537851627812415
TNTIPHEV	8	Unmodified	_TNTIPHEV_					0	0	0		nc|ENSG00000141127|O60256-3|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2;nc|ENSG00000141127|O60256-4|PRPSAP2;ENST00000466106.1_1_17:18831958-18834008:+|nuORF	nc|ENSG00000141127|O60256-3|PRPSAP2	nc|ENSG00000141127|O60256-3|PRPSAP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	455.735074	909.455596	-0.040879	-1.863E-05	0.79977	0.00036448	0.75889	0.00034585	455.73526135210915	16.266	0.25532	16.151	16.075	16.33	-0.11434	-0.0048585	0.00013814	NaN	6.7232	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23250			48740	4357	27988	27989							-0.0027537851627812415
TNTVFDAK	8	Unmodified	_TNTVFDAK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;HSPA8|p.V139Gfs*50|1|0.11|ENSG00000109971|chr11:123060264-123060265|-/CAGTCTAC|frameshift_variant;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000443628.2_1_X:114011085-114011187:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.8642578125	2	448.229625	894.444697	0.12611	5.6528E-05	-0.22628	-0.00010142	-0.10016	-4.4895E-05	448.2293326959726	22.185	0.45353	22.185	21.966	22.42	0					22	15	2	0	0	0	0.3433	1	3122	3122		6.2058	0	1	82163			48741	2285	27989	27990	59514	59514					-0.006747808905743113
TNTVFDAK	8	Unmodified	_TNTVFDAK_					0	0	0		ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;HSPA8|p.V139Gfs*50|1|0.11|ENSG00000109971|chr11:123060264-123060265|-/CAGTCTAC|frameshift_variant;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000443628.2_1_X:114011085-114011187:-|nuORF	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	448.229625	894.444697	0.051639	2.3146E-05	-0.21153	-9.4815E-05	-0.15989	-7.1669E-05	448.22943904878287	22.224	0.49455	22.174	21.972	22.467	-0.049377	-0.005539	4.4643E-06	NaN	6.2058	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90210			48742	2285	27989	27990							-0.006747808905743113
TNVFENFKL	9	Unmodified	_TNVFENFKL_					0	0	0			REV__nc|ENSG00000188042|P56559|ARL4C	REV__nc|ENSG00000188042|P56559|ARL4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2924194335938	2	556.292756	1110.57096	0.33606	0.00018695	-0.37007	-0.00020587	-0.034006	-1.8917E-05	556.292653536889	55.579	0.73332	55.579	55.174	55.907	0					62	26	3	0	0	0	0.074552	1	13270	13270		43.772	7.6454	1	1288700	+		48743	18538	27990	27991	59515	59515					0.02009725614720992
TNVFENFKL	9	Unmodified	_TNVFENFKL_					0	0	0			REV__nc|ENSG00000188042|P56559|ARL4C	REV__nc|ENSG00000188042|P56559|ARL4C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	556.292756	1110.57096	0.41941	0.00023331	-0.36493	-0.00020301	0.054476	3.0305E-05	556.2925506704886	55.784	0.8311	55.765	55.408	56.239	-0.019077	0.13127	3.8823E-06	NaN	43.772	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	969680	+		48744	18538	27990	27991							0.02009725614720992
TNVRPGTV	8	Unmodified	_TNVRPGTV_					0	0	0		ENSG00000165076|ENST00000350549|PRSS37	ENSG00000165076|ENST00000350549|PRSS37	ENSG00000165076|ENST00000350549|PRSS37	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.2290954589844	2	422.237784	842.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.957	1	54.013	53.513	54.513	0.056255								0	0	0	0.35843	1	12779	12779		10.824	0	1				48745	5921	27991	27992	59516	59516					0.033483450661947245
TNWFTFLLY	9	Unmodified	_TNWFTFLLY_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	402.20794677734375	3	402.206092	1203.59645	-0.11424	-4.5948E-05	2.1725	0.00087379	2.0582	0.00082784	402.20782278919654	17.099	0.45046	17.099	16.867	17.318	0					34	15	4	0	0	0	0.29176	1	1541	1541		6.6304	1.5829	1	93785			48746	2574	27992	27993	59517	59517					0.002792001371517472
TNWFTFLLY	9	Unmodified	_TNWFTFLLY_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	402.2066955566406	3	402.206092	1203.59645	-0.36681	-0.00014753	1.9601	0.00078838	1.5933	0.00064084	402.2072370175043	17.456	0.49253	17.339	17.053	17.545	-0.11739					29	17	2	0	0	0	0.25817	1	1654	1654		6.6304	0.0069188	1	85990			48747	2574	27992	27993	59518	59518					0.002792001371517472
TNYQTGVLE	9	Unmodified	_TNYQTGVLE_					0	0	0		ENST00000461680.1_1_3:51673299-51697433:+|nuORF;ENST00000487093.5_1_3:51669772-51697433:+|nuORF;ENSG00000164080|ENST00000684192|RAD54L2	ENST00000461680.1_1_3:51673299-51697433:+|nuORF	ENST00000461680.1_1_3:51673299-51697433:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2830810546875	2	512.750921	1023.48729	0.071361	3.659E-05	2.2254	0.0011411	2.2967	0.0011776	513.2538568194091	18.914	0.50228	18.797	18.582	19.084	-0.11739					23	17	2	0	0	0	0.25779	1	2156	2156		1.3295	0	1	37245			48748	5784	27993	27994	59519	59519					-0.023514305529943158
TNYQWLCTRLN	11	Unmodified	_TNYQWLCTRLN_					0	0	0		nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD	nc|ENSG00000198947|P11532-4|DMD	nc|ENSG00000198947|P11532-4|DMD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.251220703125	3	471.231083	1410.67142	0.038744	1.8257E-05	-3.3344	-0.0015713	-3.2956	-0.001553	471.22948056963963	24.975	0.13823	24.975	24.872	25.011	0					6	4	2	0	0	0	0.33274	1	3917	3917		3.5927	0.96144	1	30990			48749	8170	27994	27995	59520	59520					-0.01748985393919611
TPAARGPLP	9	Unmodified	_TPAARGPLP_					0	0	0			REV__nc|ENSG00000143772|P27987-2|ITPKB	REV__nc|ENSG00000143772|P27987-2|ITPKB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.7401123046875	2	440.255977	878.497401	0.22549	9.9274E-05	-0.30174	-0.00013284	-0.076254	-3.3571E-05	440.25585593053125	30.069	0.61619	30.069	29.774	30.391	0					30	21	2	0	0	0	0.24311	1	5405	5405		16.942	3.4344	1	103260	+		48750	16198	27995	27996	59521	59521					0.05329221962904285
TPAARGPLP	9	Unmodified	_TPAARGPLP_					0	0	0			REV__nc|ENSG00000143772|P27987-2|ITPKB	REV__nc|ENSG00000143772|P27987-2|ITPKB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	440.255977	878.497401	0.15219	6.7002E-05	-0.25534	-0.00011241	-0.10315	-4.5412E-05	440.25576013779965	30.068	0.592	30.095	29.79	30.382	0.027946	0.011909	-6.1846E-05	NaN	16.942	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111720	+		48751	16198	27995	27996							0.05329221962904285
TPAARGPLP	9	Unmodified	_TPAARGPLP_					0	0	0			REV__nc|ENSG00000143772|P27987-2|ITPKB	REV__nc|ENSG00000143772|P27987-2|ITPKB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	440.255977	878.497401	-0.15428	-6.792E-05	2.8645	0.0012611	2.7102	0.0011932	440.2557889511123	30.06	0.60723	30.087	29.728	30.335	0.027157	0.003118	0.0026852	NaN	16.942	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105960	+		48752	16198	27995	27996							0.05329221962904285
TPAARQLR	8	Unmodified	_TPAARQLR_					0	0	0			REV__ENST00000256257.1_1_8:33424221-33424608:-|nuORF	REV__ENST00000256257.1_1_8:33424221-33424608:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.26434326171875	2	456.772326	911.530098	0.33397	0.00015255	-0.18716	-8.5488E-05	0.14681	6.7061E-05	456.7721809355861	84.914	1.124	84.914	84.186	85.31	0					54	42	2	0	0	0	0.34337	1	22201	22201		2.3027	0	1	414820	+		48753	19553	27996	27997	59522	59522					0.07079429085740685
TPADARIQIL	10	Unmodified	_TPADARIQIL_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-2|NQO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.8059692382812	2	549.319306	1096.62406	0.61878	0.00033991	-0.091535	-5.0282E-05	0.52724	0.00028962	549.3194049892253	51.15	0.50786	51.15	50.922	51.43	0					32	18	2	0	0	0	0.31119	1	11952	11952		13.615	0.5724	1	346790			48754	7215;12869	27997	27998	59523	59523					0.0796110339738334
TPADARIQIL	10	Unmodified	_TPADARIQIL_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-2|NQO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.8059692382812	2	549.319306	1096.62406	0.58111	0.00031922	-0.13408	-7.3654E-05	0.44703	0.00024556	549.3194305663974	51.099	0.47146	51.145	50.957	51.429	0.046574					28	17	2	0	0	0	0.29608	1	11939	11939		19.626	9.552	1	372320			48755	7215;12869	27997	27998	59524	59524					0.0796110339738334
TPADARIQIL	10	Unmodified	_TPADARIQIL_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1	nc|ENSG00000181019|P15559-2|NQO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8057250976562	2	549.319306	1096.62406	0.60884	0.00033445	-0.11757	-6.4584E-05	0.49127	0.00026986	549.3194282896945	51.182	0.56841	51.192	50.937	51.506	0.0095634					38	21	3	0	0	0	0.28645	1	11950	11950		16.566	8.9569	1	354460			48756	7215;12869	27997	27998	59525	59525					0.0796110339738334
TPAEVRQVL	9	Unmodified	_TPAEVRQVL_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8013000488281	2	506.792924	1011.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.093	1	38.093	37.593	38.593	0								0	0	0	0.21571	1	7909	7909		17.443	3.5366	1				48757	1805	27998	27999	59526	59526					0.06597145334569632
TPAEVRQVL	9	Unmodified	_TPAEVRQVL_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.80133056640625	2	506.792924	1011.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.953	1	38.044	37.544	38.544	0.090881								0	0	0	0.20599	1	7866	7866		20.581	3.6386	1				48758	1805	27998	27999	59527	59527					0.06597145334569632
TPAEVRQVL	9	Unmodified	_TPAEVRQVL_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.80181884765625	2	506.792924	1011.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.911	1	38.008	37.508	38.508	0.097527								0	0	0	0.16154	1	7846	7846		32.037	11.584	1				48759	1805	27998	27999	59528	59528					0.06597145334569632
TPAEVRQVL	9	Unmodified	_TPAEVRQVL_					0	0	0		nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	nc|ENSG00000103051|Q9H9E3-3|COG4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.8013000488281	2	506.792924	1011.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.002	1	38.099	37.599	38.599	0.097527								0	0	0	0.21571	1	7873	7873		17.443	4.9111	1				48760	1805	27998	27999	59529	59529					0.06597145334569632
TPAFFAERL	9	Unmodified	_TPAFFAERL_					0	0	0		nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.84521484375	2	526.282192	1050.54983	0.92198	0.00048522	-0.63431	-0.00033383	0.28767	0.00015139	526.2818191104245	58.351	0.30101	58.337	58.169	58.47	-0.014267					14	10	2	0	0	0	0.22179	1	14164	14164		26.021	7.8857	1	150290			48761	3038	27999	28000	59530	59530					0.026577603058512977
TPAFPRSLL	9	Unmodified	_TPAFPRSLL_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2752685546875	2	501.292559	1000.57057	0.43506	0.00021809	-0.4998	-0.00025054	-0.064736	-3.2452E-05	501.29239268588236	58.42	1.0684	58.42	57.986	59.055	0					70	36	2	0	0	0	0.1558	1	14137	14137		41.956	12.874	1	436360			48762	2963	28000	28001	59531	59531					0.07030350685522535
TPAFPRSLL	9	Unmodified	_TPAFPRSLL_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2744140625	2	501.292559	1000.57057	0.38508	0.00019304	-0.91746	-0.00045991	-0.53237	-0.00026687	501.2921358893097	58.123	1.056	58.208	57.891	58.947	0.085621					61	37	2	0	0	0	0.12279	1	14129	14129		34.932	8.6639	1	449080			48763	2963	28000	28001	59532	59532					0.07030350685522535
TPAFPRSLL	9	Unmodified	_TPAFPRSLL_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2748718261719	2	501.292559	1000.57057	0.61975	0.00031068	-0.59344	-0.00029749	0.026312	1.319E-05	501.2924422212907	58.34	1.1287	58.326	57.956	59.084	-0.014271					77	40	2	0	0	0	0.1558	1	14151	14151		41.956	12.874	1	462630			48764	2963	28000	28001	59533	59533					0.07030350685522535
TPAGNFVTL	9	Unmodified	_TPAGNFVTL_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.2470397949219	2	460.247818	918.481082	-0.06836	-3.1463E-05	-0.38963	-0.00017933	-0.45799	-0.00021079	460.2473483348035	60.317	0.54384	60.412	60.18	60.724	0.095093					32	19	2	0	0	0	0.03069	1	14752	14752		60.074	13.153	1	799730			48765	2028	28001	28002	59534	59534					0.01858096006139931
TPAGNFVTL	9	Unmodified	_TPAGNFVTL_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	460.247818	918.481082	0.014774	6.7997E-06	-0.51488	-0.00023697	-0.50011	-0.00023017	460.24744195041865	60.452	0.46003	60.452	60.175	60.635	0	0.025103	4.3943E-05	NaN	60.074	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	691730			48766	2028	28001	28002							0.01858096006139931
TPAGQRRAL	9	Unmodified	_TPAGQRRAL_					0	0	0		ENST00000302850.9_1_19:7293933-7294017:-|nuORF	ENST00000302850.9_1_19:7293933-7294017:-|nuORF	ENST00000302850.9_1_19:7293933-7294017:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.2839660644531	2	485.283057	968.551562	-0.062204	-3.0186E-05	-0.091926	-4.461E-05	-0.15413	-7.4797E-05	485.28374375847096	14.801	1.1493	14.801	14.505	15.654	0					166	39	7	0	0	0	0.0028127	2	854	808;854		103.75	41.636	1	8581300			48767	9241	28002	28003	59535;59536	59536					0.06602814114467037
TPAGQRRAL	9	Unmodified	_TPAGQRRAL_					0	0	0		ENST00000302850.9_1_19:7293933-7294017:-|nuORF	ENST00000302850.9_1_19:7293933-7294017:-|nuORF	ENST00000302850.9_1_19:7293933-7294017:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.2832946777344	2	485.283057	968.551562	0.0011856	5.7534E-07	-0.054415	-2.6407E-05	-0.05323	-2.5831E-05	485.2836869855223	14.904	1.3935	14.795	14.449	15.842	-0.10981					181	48	7	0	0	0	0.0042343	2	847	847;889		92.491	41.636	1	9657800			48768	9241	28002	28003	59537;59538	59537					0.06602814114467037
TPAGQRRAL	9	Unmodified	_TPAGQRRAL_					0	0	0		ENST00000302850.9_1_19:7293933-7294017:-|nuORF	ENST00000302850.9_1_19:7293933-7294017:-|nuORF	ENST00000302850.9_1_19:7293933-7294017:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2837829589844	2	485.283057	968.551562	-0.01556	-7.5509E-06	-0.084252	-4.0886E-05	-0.099811	-4.8437E-05	485.283665284813	14.939	1.18	14.874	14.456	15.636	-0.064413					171	40	7	0	0	0	0.0028127	2	906	856;906		103.75	53.815	1	9030500			48769	9241	28002	28003	59539;59540	59540					0.06602814114467037
TPAGQRRP	8	Unmodified	_TPAGQRRP_					0	0	0		ENST00000589123.5_2_19:3463128-3463455:+|nuORF	ENST00000589123.5_2_19:3463128-3463455:+|nuORF	ENST00000589123.5_2_19:3463128-3463455:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7557067871094	2	441.74885	881.483148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.72	1	20.667	20.167	21.167	-0.05291								0	0	0	0.32762	1	2622	2622		24.674	0	1				48770	12157	28003	28004	59541	59541					0.03766569534604969
TPAHTSHV	8	Unmodified	_TPAHTSHV_					0	0	0			REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	REV__nc|ENSG00000173320|Q9P2F5-2|STOX2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.2155456542969	2	425.214309	848.414065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.725	1	84.725	84.225	85.225	0								0	0	0	0.37664	1	22221	22221		2.5775	0	1		+		48771	17777	28004	28005	59542	59542					-0.016205144849436692
TPAKVQLMLYT	11	Unmodified	_TPAKVQLMLYT_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;LRBA|p.H1830Lfs*7|1|0.13|ENSG00000198589|chr4:150806300-150806300|T/-|frameshift_variant;LRBA|p.N1293Ifs*42|1|0.08|ENSG00000198589|chr4:150850850-150850851|-/ATGTTTATTATGGAAGATGTGTA|frameshift_variant;LRBA|p.L1532Ffs*9|1|0.05|ENSG00000198589|chr4:150831950-150831951|-/TAAAAAAAAAA|frameshift_variant	nc|ENSG00000198589|P50851-2|LRBA;LRBA|p.L1532Ffs*9|1|0.05|ENSG00000198589|chr4:150831950-150831951|-/TAAAAAAAAAA|frameshift_variant	nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.59246826171875	3	422.237175	1263.68969	0.23671	9.995E-05	1.6407	0.00069277	1.8774	0.00079272	422.2383684135272	48.278	0.63245	48.322	48.121	48.754	0.04332					33	23	2	0	0	0	0.329	1	11041	11041		2.6312	0	1	133380			48772	8091;12502	28005	28006	59543	59543					0.06839756528052021
TPAKWQPFYK	10	Unmodified	_TPAKWQPFYK_					0	0	0			REV__ENST00000535551.1_1_11:60971603-60975156:+|nuORF	REV__ENST00000535551.1_1_11:60971603-60975156:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.59234619140625	3	422.560758	1264.66044	0.11538	4.8753E-05	0.28214	0.00011922	0.39752	0.00016798	422.895426159958	48.528	0.22375	48.528	48.358	48.582	0					11	7	2	0	0	0	0.31746	1	11088	11088		3.5871	0	1	230440	+		48773	19128	28006	28007	59544	59544					0.038699802940755035
TPALMPKHP	9	Unmodified	_TPALMPKHP_					0	0	0		nc|ENSG00000152527|Q8IVE3-3|PLEKHH2;PLEKHH2|p.A800Lfs*15|1|0.22|ENSG00000152527|chr2:43712319-43712319|A/-|frameshift_variant;ENST00000405223.6_1_2:43871812-43968195:+|nuORF;PLEKHH2|p.K1185Rfs*29|1|0.31|ENSG00000152527|chr2:43743986-43743986|C/-|frameshift_variant;ENSG00000152527|ENST00000282406|PLEKHH2	nc|ENSG00000152527|Q8IVE3-3|PLEKHH2	nc|ENSG00000152527|Q8IVE3-3|PLEKHH2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2717590332031	2	496.273312	990.532072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.921	1	47.921	47.421	48.421	0								0	0	0	0.13597	1	10922	10922		37.974	3.8716	1				48774	5024	28007	28008	59545	59545					0.03642721779340263
TPAPLHAAAG	10	Unmodified	_TPAPLHAAAG_					0	0	0			REV__ENST00000228468.8_1_12:50471894-50472307:+|nuORF	REV__ENST00000228468.8_1_12:50471894-50472307:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.2322998046875	2	453.245609	904.476666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.532	1	18.474	17.974	18.974	-0.058174								0	0	0	0.35948	1	1959	1959		10.824	0.64053	1		+		48775	19446	28008	28009	59546	59546					0.020606315832196742
TPAPRPAVL	9	Unmodified	_TPAPRPAVL_					0	0	0		ENST00000411466.6_3_16:30709553-30715400:+|nuORF;ENST00000262518.8_1_16:30710550-30715400:+|nuORF	ENST00000411466.6_3_16:30709553-30715400:+|nuORF	ENST00000411466.6_3_16:30709553-30715400:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.59771728515625	2	461.279452	920.544351	-0.60688	-0.00027994	0.15183	7.0034E-05	-0.45505	-0.00020991	461.27945493061833	35.128	0.86024	35.203	34.904	35.764	0.075306					74	30	3	0	0	0	0.082808	1	7074	7074		58.679	6.4105	1	717620			48776	10268	28009	28010	59547	59547					0.08090081514046688
TPAPRPAVL	9	Unmodified	_TPAPRPAVL_					0	0	0		ENST00000411466.6_3_16:30709553-30715400:+|nuORF;ENST00000262518.8_1_16:30710550-30715400:+|nuORF	ENST00000411466.6_3_16:30709553-30715400:+|nuORF	ENST00000411466.6_3_16:30709553-30715400:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.5977783203125	2	461.279452	920.544351	-0.65416	-0.00030175	0.20671	9.5352E-05	-0.44745	-0.0002064	461.2793378590686	35.087	1.1072	35.164	34.866	35.974	0.077377					65	39	3	0	0	0	0.082808	1	7060	7060		49.933	23.049	1	718700			48777	10268	28009	28010	59548	59548					0.08090081514046688
TPAPRPAVL	9	Unmodified	_TPAPRPAVL_					0	0	0		ENST00000411466.6_3_16:30709553-30715400:+|nuORF;ENST00000262518.8_1_16:30710550-30715400:+|nuORF	ENST00000411466.6_3_16:30709553-30715400:+|nuORF	ENST00000411466.6_3_16:30709553-30715400:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	461.279452	920.544351	-0.51367	-0.00023695	-0.19383	-8.9409E-05	-0.7075	-0.00032635	461.27918767817107	35.201	1.1447	35.201	34.868	36.012	0	0.011401	-0.00020539	NaN	58.679	87	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	684840			48778	10268	28009	28010							0.08090081514046688
TPARWGRA	8	Unmodified	_TPARWGRA_					0	0	0		ENST00000398659.8_2_2:3381493-3381556:-|nuORF	ENST00000398659.8_2_2:3381493-3381556:-|nuORF	ENST00000398659.8_2_2:3381493-3381556:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2483215332031	2	457.751393	913.488233	-0.051231	-2.3451E-05	-0.41585	-0.00019035	-0.46708	-0.00021381	457.7510748556948	22.431	0.85605	22.386	22.095	22.951	-0.044867					42	29	2	0	0	0	0.3366	1	3303	3303		18.135	0	1	476580			48779	10169	28010	28011	59549	59549					0.028028733972291775
TPASSRKNL	9	Unmodified	_TPASSRKNL_					0	0	0		nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;NAV2|p.K1850Rfs*16|1|0.05|ENSG00000166833|chr11:20083052-20083053|-/GAGCTCTTTTG|frameshift_variant	nc|ENSG00000166833|Q8IVL1-10|NAV2	nc|ENSG00000166833|Q8IVL1-10|NAV2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.27496337890625	2	487.274898	972.535243	-0.06204	-3.0231E-05	0.14291	6.9634E-05	0.080865	3.9404E-05	487.27496554355184	13.475	0.62897	13.475	13.058	13.687	0					51	21	3	0	0	0	0.052436	1	443	443		74.2	47.316	1	242290			48780	12820	28011	28012	59550	59550					0.047876881577167296
TPASSRKNL	9	Unmodified	_TPASSRKNL_					0	0	0		nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;NAV2|p.K1850Rfs*16|1|0.05|ENSG00000166833|chr11:20083052-20083053|-/GAGCTCTTTTG|frameshift_variant	nc|ENSG00000166833|Q8IVL1-10|NAV2	nc|ENSG00000166833|Q8IVL1-10|NAV2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2749328613281	2	487.274898	972.535243	-0.085787	-4.1802E-05	0.27413	0.00013358	0.18835	9.1777E-05	487.27504147722647	13.553	0.59473	13.454	13.069	13.663	-0.099291					40	20	3	0	0	0	0.12329	1	463	463		49.554	49.554	1	227400			48781	12820	28011	28012	59551	59551					0.047876881577167296
TPASSRKNL	9	Unmodified	_TPASSRKNL_					0	0	0		nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;NAV2|p.K1850Rfs*16|1|0.05|ENSG00000166833|chr11:20083052-20083053|-/GAGCTCTTTTG|frameshift_variant	nc|ENSG00000166833|Q8IVL1-10|NAV2	nc|ENSG00000166833|Q8IVL1-10|NAV2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.2748718261719	2	487.274898	972.535243	-0.079302	-3.8642E-05	0.02297	1.1193E-05	-0.056332	-2.7449E-05	487.27494502096783	13.567	0.69289	13.499	12.993	13.686	-0.067495					50	24	3	0	0	0	0.20381	1	466	466		29.841	17.309	1	248900			48782	12820	28011	28012	59552	59552					0.047876881577167296
TPATWFLNL	9	Unmodified	_TPATWFLNL_					0	0	0		chr5:122070163-122070494|109|24.27|0.11|7.78|-|2|None,LOX|2	chr5:122070163-122070494|109|24.27|0.11|7.78|-|2|None,LOX|2	chr5:122070163-122070494|109|24.27|0.11|7.78|-|2|None,LOX|2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3032836914062	2	531.784567	1061.55458	0.58424	0.00031069	-3.8325	-0.0020381	-3.2482	-0.0017274	532.2826331314184	62.448	0.21414	62.448	62.396	62.611	0					12	7	2	0	0	0	0.2322	1	15408	15408		14.838	0	1	130490			48783	166	28012	28013	59553	59553					0.026266444486054752
TPCWKIAPNNE	11	Unmodified	_TPCWKIAPNNE_					0	0	0			REV__ANKIB1|p.Q1077Sfs*7|1|0.09|ENSG00000001629|chr7:92398907-92398908|-/TCTGACC|frameshift_variant	REV__ANKIB1|p.Q1077Sfs*7|1|0.09|ENSG00000001629|chr7:92398907-92398908|-/TCTGACC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.54461669921875	3	424.872895	1271.59686	-0.16325	-6.9358E-05	-0.53176	-0.00022593	-0.695	-0.00029529	424.87243005348245	25.865	0.83749	25.843	25.635	26.472	-0.022236					52	29	3	0	0	0	0.33326	1	4293	4293		1.4551	0.49284	1	203090	+		48784	13104	28013	28014	59554	59554					-0.028077482053049607
TPDAMKAAMAL	11	2 Oxidation (M)	_TPDAM(Oxidation (M))KAAM(Oxidation (M))AL_		TPDAM(1)KAAM(1)AL		TPDAM(140)KAAM(140)AL	0	0	2		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.2760009765625	2	576.275392	1150.53623	-0.043354	-2.4984E-05	-0.0048986	-2.8229E-06	-0.048253	-2.7807E-05	576.2755661007782	34.289	1.1352	34.289	33.808	34.943	0					122	40	4	0	0	0	5.9792E-06	1	6666	6666		139.38	113.98	1	1428500			48785	1293	28014	28015	59555	59555		160;161			-0.03301601579914859
TPDAMKAAMAL	11	2 Oxidation (M)	_TPDAM(Oxidation (M))KAAM(Oxidation (M))AL_		TPDAM(1)KAAM(1)AL		TPDAM(100)KAAM(100)AL	0	0	2		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3694458007812	2	576.275392	1150.53623	0.15507	8.9362E-05	-0.19872	-0.00011452	-0.043651	-2.5155E-05	576.275368265008	34.154	1.3005	34.22	33.733	35.034	0.06636					131	46	4	0	0	0	6.7459E-06	1	6622	6622		104.48	85.227	1	1302700			48786	1293	28014	28015	59556	59556		160;161			-0.03301601579914859
TPDAMKAAMAL	11	2 Oxidation (M)	_TPDAM(Oxidation (M))KAAM(Oxidation (M))AL_		TPDAM(1)KAAM(1)AL		TPDAM(81)KAAM(81)AL	0	0	2		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2759399414062	2	576.275392	1150.53623	0.022939	1.3219E-05	-0.12389	-7.1397E-05	-0.10096	-5.8178E-05	576.275485127046	34.118	1.3107	34.184	33.711	35.022	0.066704					134	46	4	0	0	0	0.004696	1	6602	6602		80.896	63.783	1	1463900			48787	1293	28014	28015	59557	59557		160;161			-0.03301601579914859
TPDKKASRHI	10	Unmodified	_TPDKKASRHI_					0	0	0		ENST00000494346.1_1_2:198436734-198482697:-|nuORF;ENSG00000162944|ENST00000295049|RFTN2	ENST00000494346.1_1_2:198436734-198482697:-|nuORF	ENST00000494346.1_1_2:198436734-198482697:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3694458007812	2	576.827829	1151.64111	0.1694	9.7715E-05	0.26322	0.00015183	0.43262	0.00024955	576.8282073845448	34.213	0.42141	34.279	34.04	34.461	0.06636					25	14	2	0	0	0	0.3156	1	6715	6715		3.5965	0	1	170260			48788	5632	28015	28016	59558	59558					0.07135024003196122
TPDRLEQHR	9	Unmodified	_TPDRLEQHR_					0	0	0			REV__nc|ENSG00000142794|Q9H094-3|NBPF3	REV__nc|ENSG00000142794|Q9H094-3|NBPF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.369384765625	2	576.299436	1150.58432	-0.014433	-8.3177E-06	-0.62171	-0.00035829	-0.63614	-0.00036661	576.2990722910697	34.194	0.23126	34.26	34.203	34.435	0.06636					10	7	2	0	0	0	0.25526	1	6766	6766		4.3292	4.3292	1	70770	+		48789	16136	28016	28017	59559	59559					0.015049764466539273
TPDTGRILSKL	11	Unmodified	_TPDTGRILSKL_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000159352|P55036-2|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.8512573242188	2	600.85097	1199.68739	0.72718	0.00043693	-0.23531	-0.00014139	0.49187	0.00029554	600.8508010788357	44.71	0.93245	44.71	44.383	45.315	0					102	33	4	0	0	0	1.4035E-12	2	9929	9929;9977		160.81	72.445	1	4431500			48790	5402	28017	28018	59560;59561	59560					0.0955304411461384
TPDTGRILSKL	11	Unmodified	_TPDTGRILSKL_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000159352|P55036-2|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.8511962890625	2	600.85097	1199.68739	0.68981	0.00041447	-0.21355	-0.00012831	0.47626	0.00028616	600.8507884397114	44.455	1.0122	44.523	44.249	45.261	0.068569					110	36	4	0	0	0	1.4035E-12	4	9852	9808;9852;9896;9944		160.81	92.97	1	5546000			48791	5402	28017	28018	59562;59563;59564;59565	59563					0.0955304411461384
TPDTGRILSKL	11	Unmodified	_TPDTGRILSKL_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000159352|P55036-2|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8511352539062	2	600.85097	1199.68739	0.46218	0.0002777	0.0021211	1.2744E-06	0.4643	0.00027897	600.8509432685468	44.368	1.1662	44.443	44.174	45.34	0.07505					121	42	4	0	0	0	1.4035E-12	2	9832	9832;9878		160.81	83.76	1	4234300			48792	5402	28017	28018	59566;59567	59566					0.0955304411461384
TPDTSYQW	8	Unmodified	_TPDTSYQW_					0	0	0		ENSG00000242221|ENST00000406487|PSG2	ENSG00000242221|ENST00000406487|PSG2	ENSG00000242221|ENST00000406487|PSG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.8194274902344	2	499.216714	996.418876	0.66652	0.00033274	-0.25183	-0.00012572	0.41469	0.00020702	499.21683644093787	32.501	0.16666	32.501	32.415	32.582	0					7	5	2	0	0	0	0.34218	1	6223	6223		5.2307	0	1	41053			48793	8542	28018	28019	59568	59568					-0.07947675132857057
TPEDRRPTL	9	Unmodified	_TPEDRRPTL_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.791015625	2	542.790912	1083.56727	0.36508	0.00019816	-0.059311	-3.2193E-05	0.30577	0.00016597	542.7908297110469	24.071	1.2875	24.071	23.419	24.706	0					123	43	4	0	0	0	6.0404E-05	5	3640	3552;3597;3640;3682;3738		147.24	84.668	1	1677000			48794	1129	28019	28020	59569;59570;59571;59572;59573	59571					0.02883055840857196
TPEDRRPTL	9	Unmodified	_TPEDRRPTL_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.791015625	2	542.790912	1083.56727	0.53082	0.00028812	-0.2126	-0.00011539	0.31822	0.00017273	542.7907594723582	24.275	1.3978	24.203	23.474	24.872	-0.072559					139	47	4	0	0	0	0.00013073	6	3703	3568;3612;3656;3703;3750;3801		135.86	90.124	1	1709100			48795	1129	28019	28020	59574;59575;59576;59577;59578;59579	59577					0.02883055840857196
TPEDRRPTL	9	Unmodified	_TPEDRRPTL_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.791015625	2	542.790912	1083.56727	0.53196	0.00028874	-0.21262	-0.00011541	0.31934	0.00017333	542.7907538670556	24.286	1.4642	24.247	23.45	24.914	-0.038927					125	50	4	0	0	0	0.00013073	6	3708	3566;3616;3666;3708;3751;3800		135.86	82.031	1	1689700			48796	1129	28019	28020	59580;59581;59582;59583;59584;59585	59583					0.02883055840857196
TPELLRIAK	9	Unmodified	_TPELLRIAK_					0	0	0		CON__REFSEQ:XP_585019	CON__REFSEQ:XP_585019	CON__REFSEQ:XP_585019	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7669677734375	2	520.826766	1039.63898	0.69075	0.00035976	-0.49833	-0.00025954	0.19242	0.00010022	520.8264227540864	32.464	0.53045	32.464	32.307	32.837	0					23	18	2	0	0	0	0.25066	1	6273	6273		7.2892	0	1	128860		+	48797	240	28020	28021	59586	59586					0.12074595265357857
TPFDGGFMAGL	11	Unmodified	_TPFDGGFMAGL_					0	0	0			REV__ENSG00000168301|ENST00000404589|KCTD6	REV__ENSG00000168301|ENST00000404589|KCTD6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7467651367188	2	556.757692	1111.50083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.646	1	15.582	15.082	16.082	-0.064413								0	0	0	0.37382	1	1088	1088		2.9952	1.151	1		+		48798	17450	28021	28022	59587	59587					-0.05045896045385234
TPFGGRLLVL	10	Unmodified	_TPFGGRLLVL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.8300170898438	2	536.829309	1071.64407	0.52851	0.00028372	0.32276	0.00017327	0.85127	0.00045699	536.82938627942	68.926	1.1165	68.926	68.616	69.732	0					101	39	4	0	0	0	0.020018	3	17354	17354;17396;17444		71.708	42.626	1	3161900			48799	739	28022	28023	59588;59589;59590	59588					0.11110899127993434
TPFGGRLLVL	10	Unmodified	_TPFGGRLLVL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.8296508789062	2	536.829309	1071.64407	0.4681	0.00025129	0.43364	0.00023279	0.90174	0.00048408	536.8294278243559	68.874	1.185	68.946	68.618	69.803	0.071938					106	42	4	0	0	0	0.020018	4	17374	17330;17374;17425;17476		71.708	41.071	1	3276900			48800	739	28022	28023	59591;59592;59593;59594	59592					0.11110899127993434
TPFGGRLLVL	10	Unmodified	_TPFGGRLLVL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.82958984375	2	536.829309	1071.64407	0.49038	0.00026325	0.4123	0.00022133	0.90267	0.00048458	536.8294171578226	68.962	1.2364	68.943	68.598	69.835	-0.019157					103	44	4	0	0	0	0.020018	3	17399	17352;17399;17446		71.708	42.626	1	3144800			48801	739	28022	28023	59595;59596;59597	59596					0.11110899127993434
TPFPILALT	9	Unmodified	_TPFPILALT_					0	0	0			REV__ENST00000430246.6_1_14:21730999-21731299:-|nuORF	REV__ENST00000430246.6_1_14:21730999-21731299:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2565002441406	2	486.791861	971.569169	0.11629	5.661E-05	-3.1794	-0.0015477	-3.0631	-0.0014911	486.79032710736925	31.157	0.443	31.157	30.918	31.361	0					22	15	2	0	0	0	0.24311	1	5735	5735		7.2892	3.3448	1	125370	+		48802	20940	28023	28024	59598	59598					0.0822471659673738
TPFSHKTTL	9	Unmodified	_TPFSHKTTL_					0	0	0		NOXRED1|p.Q321Hfs*17|1|0.05|ENSG00000165555|chr14:77394724-77394748|GAGAACAGGACTACTTGAGAGATGC/-|frameshift_variant	NOXRED1|p.Q321Hfs*17|1|0.05|ENSG00000165555|chr14:77394724-77394748|GAGAACAGGACTACTTGAGAGATGC/-|frameshift_variant	NOXRED1|p.Q321Hfs*17|1|0.05|ENSG00000165555|chr14:77394724-77394748|GAGAACAGGACTACTTGAGAGATGC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.26708984375	2	516.279649	1030.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.204	1	24.131	23.631	24.631	-0.072559								0	0	0	0.24715	1	3682	3682		7.2892	0.56607	1				48803	13033	28024	28025	59599	59599					0.030694564432451443
TPFYPSTKF	9	Unmodified	_TPFYPSTKF_					0	0	0			REV__nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	REV__nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7918701171875	2	544.276575	1086.5386	0.57586	0.00031343	-0.095093	-5.1757E-05	0.48077	0.00026167	544.2753218387022	76.922	0.27485	76.978	76.785	77.06	0.05542					14	9	3	0	0	0	0.25202	1	19799	19799		10.824	2.2306	1	89888	+		48804	13887	28025	28026	59600	59600					-0.0012106178828616976
TPFYRKTK	8	Unmodified	_TPFYRKTK_					0	0	0			REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.766845703125	2	520.798009	1039.58147	0.4089	0.00021296	-0.39875	-0.00020767	0.010158	5.2904E-06	520.7977132861486	32.761	0.38795	32.816	32.675	33.063	0.055309					18	13	2	0	0	0	0.34131	1	6243	6243		12.532	12.532	1	89667	+		48805	22880	28026	28027	59601	59601					0.06325753059786621
TPGAKRTTL	9	Unmodified	_TPGAKRTTL_					0	0	0			REV__ENST00000473476.5_1_2:25016007-25016331:+|nuORF	REV__ENST00000473476.5_1_2:25016007-25016331:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.767333984375	2	472.779816	943.545079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.338	1	86.422	85.922	86.922	0.084251								0	0	0	0.25197	1	22711	22711		5.7319	0	1		+		48806	21382	28027	28028	59602	59602					0.07104876163089102
TPGAQEGKK	9	Unmodified	_TPGAQEGKK_					0	0	0		ENST00000382938.3_1_15:29363239-29394119:+|nuORF;ENST00000559814.5_1_15:29346087-29400775:+|nuORF;nc|ENSG00000034053|Q99767-2|APBA2;ENSG00000034053|ENST00000683413|APBA2	ENST00000382938.3_1_15:29363239-29394119:+|nuORF	ENST00000382938.3_1_15:29363239-29394119:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.75872802734375	2	458.248349	914.482145	0.029034	1.3305E-05	-0.075663	-3.4673E-05	-0.04663	-2.1368E-05	458.2482331941353	22.798	0.75197	22.753	22.553	23.305	-0.044867					55	26	4	0	0	0	0.13748	1	3207	3207		32.786	4.2988	1	256520			48807	565	28028	28029	59603	59603					0.021483103750597365
TPGLSSGAHPV	11	Unmodified	_TPGLSSGAHPV_					0	0	0		ENST00000433411.7_1_17:18062924-18082138:+|nuORF	ENST00000433411.7_1_17:18062924-18082138:+|nuORF	ENST00000433411.7_1_17:18062924-18082138:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.226806640625	2	511.766906	1021.51926	0.033137	1.6958E-05	0.60099	0.00030756	0.63412	0.00032452	511.7678685556811	17.99	0.45912	17.929	17.766	18.225	-0.060431					39	16	3	0	0	0	0.29118	1	1872	1872		27.629	6.0918	1	64272			48808	10490	28029	28030	59604	59604					0.009359819208157205
TPGLWARRN	9	Unmodified	_TPGLWARRN_					0	0	0		ENST00000331728.8_2_22:31674601-31674808:+|nuORF	ENST00000331728.8_2_22:31674601-31674808:+|nuORF	ENST00000331728.8_2_22:31674601-31674808:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8140869140625	2	535.796332	1069.57811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.359	1	52.41	51.91	52.91	0.050575								0	0	0	0.22065	1	12285	12285		15.847	0	1				48809	9446	28030	28031	59605	59605					0.04610503005801547
TPGTSRPLS	9	Unmodified	_TPGTSRPLS_					0	0	0		nc|ENSG00000144868|Q6UXF1-2|TMEM108;ENST00000511388.1_1_3:133098579-133114827:+|nuORF;ENSG00000144868|ENST00000321871|TMEM108	nc|ENSG00000144868|Q6UXF1-2|TMEM108	nc|ENSG00000144868|Q6UXF1-2|TMEM108	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7586364746094	2	458.248349	914.482145	-0.096331	-4.4143E-05	0.078654	3.6043E-05	-0.017677	-8.1003E-06	458.2483345751085	22.805	0.68078	22.717	22.484	23.165	-0.087608					51	23	3	0	0	0	0.088443	1	3242	3242		39.95	1.335	1	246240			48810	4621	28031	28032	59606	59606					0.021483103750597365
TPHLRNLAV	9	Unmodified	_TPHLRNLAV_					0	0	0		nc|ENSG00000180822|Q5JS54-3|PSMG4;ENSG00000180822|ENST00000438998|PSMG4;nc|ENSG00000180822|Q5JS54-2|PSMG4	nc|ENSG00000180822|Q5JS54-3|PSMG4	nc|ENSG00000180822|Q5JS54-3|PSMG4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.8002014160156	2	510.801083	1019.58761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.403	1	34.481	33.981	34.981	0.077377								0	0	0	0.24066	1	6774	6774		9.3831	0.035688	1				48811	7206	28032	28033	59607	59607					0.07860271291315257
TPHMEGQHSTD	11	Unmodified	_TPHMEGQHSTD_					0	0	0			REV__ENST00000293350.8_1_19:49973727-49973844:+|nuORF	REV__ENST00000293350.8_1_19:49973727-49973844:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.2564086914062	2	620.256576	1238.4986	0.19893	0.00012339	-0.26981	-0.00016735	-0.070883	-4.3966E-05	620.2563969771926	59.162	0.61887	59.162	58.941	59.56	0					45	21	3	0	0	0	0.43149	1	14430	14430		7.1017	0.89594	1	390470	+		48812	19765	28033	28034	59608	59608					-0.11110976521149496
TPHMEGQHSTD	11	Unmodified	_TPHMEGQHSTD_					0	0	0			REV__ENST00000293350.8_1_19:49973727-49973844:+|nuORF	REV__ENST00000293350.8_1_19:49973727-49973844:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.2568359375	2	620.256576	1238.4986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.775	1	58.775	58.275	59.275	0								0	0	0	0.3255	1	14269	14269		13.615	0.5724	1		+		48813	19765	28033	28034	59609	59609					-0.11110976521149496
TPHMEGQHSTD	11	Unmodified	_TPHMEGQHSTD_					0	0	0			REV__ENST00000293350.8_1_19:49973727-49973844:+|nuORF	REV__ENST00000293350.8_1_19:49973727-49973844:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.2560424804688	2	620.256576	1238.4986	0.12308	7.6342E-05	0.50784	0.00031499	0.63092	0.00039133	620.2563915100668	59.073	1.0139	59.164	58.474	59.488	0.091301					56	35	3	0	0	0	0.43149	1	14363	14363		7.1017	0.47135	1	411090	+		48814	19765	28033	28034	59610	59610					-0.11110976521149496
TPHMEGQHSTD	11	Unmodified	_TPHMEGQHSTD_					0	0	0			REV__ENST00000293350.8_1_19:49973727-49973844:+|nuORF	REV__ENST00000293350.8_1_19:49973727-49973844:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.2556762695312	2	620.256576	1238.4986	0.36177	0.00022439	-1.1159	-0.00069215	-0.75414	-0.00046776	620.2560508062825	58.73	0.45115	58.716	58.496	58.947	-0.014267					33	15	3	0	0	0	0.3429	1	14254	14254		18.373	4.467	1	451340	+		48815	19765	28033	28034	59611	59611					-0.11110976521149496
TPHMEGQHSTD	11	Unmodified	_TPHMEGQHSTD_					0	0	0			REV__ENST00000293350.8_1_19:49973727-49973844:+|nuORF	REV__ENST00000293350.8_1_19:49973727-49973844:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.2564697265625	2	620.256576	1238.4986	0.31269	0.00019395	-0.30637	-0.00019003	0.0063166	3.9179E-06	620.2563430602737	59.155	0.57053	59.14	58.917	59.488	-0.014267					28	19	2	0	0	0	0.33073	1	14405	14405		7.1017	4.6032	1	430600	+		48816	19765	28033	28034	59612	59612					-0.11110976521149496
TPHMEGQHSTD	11	Unmodified	_TPHMEGQHSTD_					0	0	0			REV__ENST00000293350.8_1_19:49973727-49973844:+|nuORF	REV__ENST00000293350.8_1_19:49973727-49973844:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	620.256576	1238.4986	0.19893	0.00012339	-0.26981	-0.00016735	-0.070883	-4.3966E-05	620.2563969771926	59.162	0.61887	59.162	58.941	59.56	0	0.0063774	-0.00035479	NaN	7.1017	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390470	+		48817	19765	28033	28034							-0.11110976521149496
TPHMEGQHSTD	11	Unmodified	_TPHMEGQHSTD_					0	0	0			REV__ENST00000293350.8_1_19:49973727-49973844:+|nuORF	REV__ENST00000293350.8_1_19:49973727-49973844:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	620.256576	1238.4986	0.12308	7.6342E-05	0.50784	0.00031499	0.63092	0.00039133	620.2563915100668	59.073	1.0139	59.164	58.474	59.488	0.091301	0.0085685	0.00060989	NaN	7.1017	56	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411090	+		48818	19765	28033	28034							-0.11110976521149496
TPHSSGTR	8	Unmodified	_TPHSSGTR_					0	0	0		ENST00000578846.5_1_17:80017806-80018124:-|nuORF	ENST00000578846.5_1_17:80017806-80018124:-|nuORF	ENST00000578846.5_1_17:80017806-80018124:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7580871582031	2	421.709391	841.404229	-0.37617	-0.00015863	0.13119	5.5324E-05	-0.24498	-0.00010331	421.709352028199	13.514	0.34867	13.514	13.365	13.714	0					24	11	3	0	0	0	0.34337	1	470	470		5.2307	0	1	126730			48819	12066	28034	28035	59613	59613					-0.022817024903133643
TPIERIPYL	9	Unmodified	_TPIERIPYL_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.7736206054688	2	551.318774	1100.623	0.088861	4.8991E-05	-0.55531	-0.00030615	-0.46645	-0.00025716	551.3181048530829	60.348	0.43001	60.348	60.065	60.495	0					36	15	3	0	0	0	0.075068	1	14709	14709		57.249	24.944	1	586270			48820	4906	28035	28036	59614	59614					0.07670889028440797
TPIERIPYL	9	Unmodified	_TPIERIPYL_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.3171997070312	2	551.318774	1100.623	-0.18455	-0.00010175	-0.32568	-0.00017955	-0.51023	-0.0002813	551.3183060483505	60.122	0.54361	60.217	59.932	60.475	0.095093					40	19	3	0	0	0	0.038291	1	14666	14666		57.249	34.513	1	658130			48821	4906	28035	28036	59615	59615					0.07670889028440797
TPIERIPYL	9	Unmodified	_TPIERIPYL_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.774169921875	2	551.318774	1100.623	0.26483	0.000146	-0.69805	-0.00038485	-0.43322	-0.00023884	551.3181126760549	60.348	0.54537	60.337	59.94	60.485	-0.011486					36	19	3	0	0	0	0.12329	1	14728	14728		41.956	20.209	1	551970			48822	4906	28035	28036	59616	59616					0.07670889028440797
TPIIFGLML	9	Unmodified	_TPIIFGLML_					0	0	0			REV__ENST00000294161.10_1_11:62496007-62496118:+|nuORF	REV__ENST00000294161.10_1_11:62496007-62496118:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.2775573730469	2	502.796089	1003.57763	0.12035	6.0511E-05	-0.83807	-0.00042138	-0.71773	-0.00036087	502.7958720599978	23.199	1.0666	23.199	22.763	23.829	0					64	36	4	0	0	0	0.26145	1	3557	3557		2.0598	0	1	248880	+		48823	19771	28036	28037	59617	59617					0.07597947241731617
TPIIFGLML	9	Unmodified	_TPIIFGLML_					0	0	0			REV__ENST00000294161.10_1_11:62496007-62496118:+|nuORF	REV__ENST00000294161.10_1_11:62496007-62496118:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	502.796089	1003.57763	0.30585	0.00015378	-0.52367	-0.0002633	-0.21782	-0.00010952	502.79585040860417	23.278	0.46659	23.233	23.033	23.5	-0.044867	0.033062	-0.00020757	NaN	4.3292	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238200	+		48824	19771	28036	28037							0.07597947241731617
TPIINVKELLL	11	Unmodified	_TPIINVKELLL_					0	0	0			REV__ENST00000513820.1_1_5:118463535-118463700:-|nuORF	REV__ENST00000513820.1_1_5:118463535-118463700:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.3800048828125	2	626.897389	1251.78022	0.13759	8.6256E-05	-3.2571	-0.0020418	-3.1195	-0.0019556	626.8959197442783	103.64	0.043427	103.64	103.6	103.65	-0.0011139					8	6	2	0	0	0	0.42346	1	27555	27555		8.1555	0	1	8624500	+		48825	21830	28037	28038	59618	59618					0.16440548848004255
TPILKVADFG	10	Unmodified	_TPILKVADFG_					0	0	0		ENSG00000125834|ENST00000381482|STK35	ENSG00000125834|ENST00000381482|STK35	ENSG00000125834|ENST00000381482|STK35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2852172851562	2	530.8055	1059.59645	0.39231	0.00020824	-0.11633	-6.1749E-05	0.27598	0.00014649	530.8055105115351	49.509	0.6781	49.541	49.209	49.887	0.032043					30	24	2	0	0	0	0.31267	1	11364	11364		14.838	8.6325	1	142300			48826	3237	28038	28039	59619	59619					0.06903200137116983
TPILKVADFG	10	Unmodified	_TPILKVADFG_					0	0	0		ENSG00000125834|ENST00000381482|STK35	ENSG00000125834|ENST00000381482|STK35	ENSG00000125834|ENST00000381482|STK35	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	530.8055	1059.59645	0.59519	0.00031593	0.059468	3.1566E-05	0.65465	0.00034749	530.8056897489597	49.602	0.35498	49.602	49.408	49.763	0	0.03044	8.9132E-05	NaN	14.838	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170070			48827	3237	28038	28039							0.06903200137116983
TPISRLVAL	9	Unmodified	_TPISRLVAL_					0	0	0		ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.32080078125	2	485.30821	968.601866	0.36244	0.0001759	0.56382	0.00027363	0.92626	0.00044952	485.3084621892473	57.098	0.83944	57.098	56.713	57.552	0					71	30	3	0	0	0	0.059067	1	13800	13800		49.527	9.5775	1	1393900			48828	7029	28039	28040	59620	59620					0.11630923719621933
TPISRLVAL	9	Unmodified	_TPISRLVAL_					0	0	0		ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.3209228515625	2	485.30821	968.601866	0.25717	0.00012481	0.69916	0.00033931	0.95632	0.00046411	485.3085454386998	56.988	0.69276	57.066	56.704	57.397	0.078674					60	25	3	0	0	0	0.059067	1	13770	13770		49.527	9.5775	1	1256600			48829	7029	28039	28040	59621	59621					0.11630923719621933
TPISRLVAL	9	Unmodified	_TPISRLVAL_					0	0	0		ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	ENSG00000177981|ENST00000317697|ASB8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	485.30821	968.601866	0.25731	0.00012488	0.70756	0.00034338	0.96487	0.00046826	485.3085416573005	57.158	0.74325	57.139	56.809	57.553	-0.019077					59	26	3	0	0	0	0.2422	1	13874	13874		14.405	0	1	1362000			48830	7029	28039	28040	59622	59622					0.11630923719621933
TPITFPLL	8	Unmodified	_TPITFPLL_					0	0	0			REV__ENSG00000174898|ENST00000381624|CATSPERD	REV__ENSG00000174898|ENST00000381624|CATSPERD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.9326477050781	2	451.273304	900.532055	0.35783	0.00016148	-0.59358	-0.00026787	-0.23575	-0.00010639	451.27217487135306	91.369	0.15853	91.37	91.323	91.481	0.00046539					12	8	2	0	0	0	0.32778	1	24277	24277		5.2307	0	1	97210	+		48831	17859	28040	28041	59623	59623					0.07781045051001456
TPIYKIDQQVF	11	Unmodified	_TPIYKIDQQVF_					0	0	0			REV__ENSG00000023445|ENST00000263464|BIRC3	REV__ENSG00000023445|ENST00000263464|BIRC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.57025146484375	3	451.246727	1350.71835	0.012819	5.7844E-06	-2.4299	-0.0010965	-2.417	-0.0010907	451.5798857721604	31.227	0.68855	31.227	30.838	31.526	0					56	24	4	0	0	0	0.32787	1	5765	5765		10.527	1.4599	1	323370	+		48832	13471	28041	28042	59624	59624					0.05702197428831823
TPKAALSSRA	10	Unmodified	_TPKAALSSRA_					0	0	0		ENSG00000134369|ENST00000685211|NAV1	ENSG00000134369|ENST00000685211|NAV1	ENSG00000134369|ENST00000685211|NAV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.7985534667969	2	501.290548	1000.56654	0.54966	0.00027554	3.6201	0.0018147	4.1698	0.0020903	501.2902445775435	84.53	0.67497	84.517	84.302	84.977	-0.01284					37	26	2	0	0	0	0.30555	1	22098	22098		20.415	1.1575	1	118290			48833	3779	28042	28043	59625	59625					0.06628261191792717
TPKAWLRA	8	Unmodified	_TPKAWLRA_					0	0	0		ENST00000367876.8_1_1:166819614-166821841:+|nuORF	ENST00000367876.8_1_1:166819614-166821841:+|nuORF	ENST00000367876.8_1_1:166819614-166821841:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7793884277344	2	471.779619	941.544686	-0.16589	-7.8262E-05	0.19118	9.0196E-05	0.025294	1.1933E-05	471.7794370021119	13.18	0.6494	13.08	12.894	13.544	-0.099291					31	22	2	0	0	0	0.45307	1	353	353		4.756	2.4533	1	107150			48834	9747	28043	28044	59626	59626					0.07157501233893981
TPKDLLPVLML	11	Unmodified	_TPKDLLPVLML_					0	0	0		ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	ENSG00000104237|ENST00000220676|RP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.3732299804688	2	620.372692	1238.73083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.118	1	97.112	96.612	97.612	-0.0055466								0	0	0	0.36685	1	25991	25991		4.5289	1.2476	1				48835	1873	28044	28045	59627	59627					0.12101517567521114
TPKEKAQAL	9	Unmodified	_TPKEKAQAL_					0	0	0		ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67	ENSG00000148773|ENST00000368654|MKI67	ENSG00000148773|ENST00000368654|MKI67	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.67401123046875	2	493.287474	984.560395	0.1678	8.2775E-05	0.3295	0.00016254	0.4973	0.00024531	493.2876538203667	15.148	0.40638	15.038	14.905	15.312	-0.10982					28	14	3	0	0	0	0.24688	1	941	941		14.838	0	1	226700			48836	4828	28045	28046	59628	59628					0.06749742960278127
TPKEKNKL	8	Unmodified	_TPKEKNKL_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168;CCDC168|p.K6712Vfs*24|1|0.16|ENSG00000175820|chr13:102730542-102730564|CTGAAAGAACTTGAGTATCTTTC/-|frameshift_variant;CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2899169921875	2	479.290017	956.565481	-0.075417	-3.6147E-05	-0.0013878	-6.6515E-07	-0.076805	-3.6812E-05	479.2899475661976	18.472	0.89968	18.414	18.059	18.958	-0.058174					76	31	4	0	0	0	0.44734	1	1999	1999		6.7232	0.99131	1	941330			48837	6886	28046	28047	59629	59629					0.0854604682289164
TPKGILFFL	9	Unmodified	_TPKGILFFL_					0	0	0		nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1;nc|ENSG00000101187|Q96BD0-2|SLCO4A1;nc|ENSG00000101187|Q96BD0-3|SLCO4A1	nc|ENSG00000101187|Q96BD0-4|SLCO4A1	nc|ENSG00000101187|Q96BD0-4|SLCO4A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3172607421875	2	518.315503	1034.61645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.203	1	74.173	73.673	74.673	-0.030655								0	0	0	0.23367	1	18990	18990		11.64	3.7301	1				48838	1672	28047	28048	59630	59630					0.10052995867749814
TPKGQLLVLD	10	Unmodified	_TPKGQLLVLD_					0	0	0		ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.336181640625	2	542.324057	1082.63356	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.274	1	96.351	95.851	96.851	0.077408								0	0	0	0.3726	1	25733	25733		5.2969	2.3016	1				48839	2874	28048	28049	59631	59631					0.09554871682894372
TPKIYILLCAM	11	Unmodified	_TPKIYILLCAM_					0	0	0			REV__ENSG00000172461|ENST00000302103|FUT9	REV__ENSG00000172461|ENST00000302103|FUT9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3692016601562	2	633.353445	1264.69234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.527	1	84.607	84.107	85.107	0.080887								0	0	0	0.33831	1	22156	22156		10.8	3.6978	1		+		48840	17713	28049	28050	59632	59632					0.07057888661370271
TPKKAKPIERQ	11	Unmodified	_TPKKAKPIERQ_					0	0	0			REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	648.3932495117188	2	648.393336	1294.77212	0.069693	4.5189E-05	-0.026305	-1.7056E-05	0.043388	2.8132E-05	648.3933653466829	98.863	1.1234	98.863	98.462	99.586	0					315	135	4	0	0	0	0.47633	1	26516	26516		1.1933	0	1	483420	+		48841	18518	28050	28051	59633	59633					0.13652414651210165
TPKKGRSIT	9	Unmodified	_TPKKGRSIT_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.30126953125	2	494.300916	986.587279	0.57272	0.0002831	0.084994	4.2013E-05	0.65772	0.00032511	494.30093072190726	86.96	1.3173	86.96	86.571	87.888	0					179	57	4	0	0	0	0.29638	3	22863	22863;23000;23043		9.3831	9.3831	1	8166000	+		48842	14196	28051	28052	59634;59635;59636	59634					0.09344851571461277
TPKKGRSIT	9	Unmodified	_TPKKGRSIT_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.3012390136719	2	494.300916	986.587279	0.46114	0.00022794	0.27587	0.00013636	0.73701	0.0003643	494.3009964772224	86.927	1.3022	87.014	86.554	87.856	0.087097					180	59	4	0	0	0	0.29638	1	23000	23000		9.3831	2.66	1	7757700	+		48843	14196	28051	28052	59637	59637					0.09344851571461277
TPKKGRSIT	9	Unmodified	_TPKKGRSIT_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.3011169433594	2	494.300916	986.587279	0.49061	0.00024251	0.24918	0.00012317	0.73978	0.00036568	494.300972210608	86.967	1.2777	86.961	86.557	87.835	-0.0056152					168	58	4	0	0	0	0.29638	3	22842	22842;22971;23018		9.3831	9.3831	1	7059700	+		48844	14196	28051	28052	59638;59639;59640	59638					0.09344851571461277
TPKKKGETI	9	Unmodified	_TPKKKGETI_					0	0	0			REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.6343078613281	2	501.303124	1000.5917	0.28662	0.00014368	1.6941	0.00084926	1.9807	0.00099294	501.3042789332715	93.827	0.36412	93.913	93.682	94.046	0.08667					40	28	2	0	0	0	0.24993	1	24964	24964		13.042	1.4022	1	108860	+		48845	16022	28052	28053	59641	59641					0.09142315994370165
TPKKLGNSL	9	Unmodified	_TPKKLGNSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2899169921875	2	479.290017	956.565481	0.038197	1.8307E-05	-0.080151	-3.8416E-05	-0.041954	-2.0108E-05	479.2899029989785	18.318	0.96545	18.318	17.898	18.864	0					84	33	4	0	0	0	0.0040516	3	1906	1858;1906;1950		93.938	32.336	1	789310			48846	4052;11723	28053	28054	59642;59643;59644	59643					0.0854604682289164
TPKKLGNSL	9	Unmodified	_TPKKLGNSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2898864746094	2	479.290017	956.565481	0.058928	2.8244E-05	-0.12143	-5.82E-05	-0.062501	-2.9956E-05	479.28987969874873	18.42	0.85294	18.303	18.065	18.918	-0.11739					80	29	4	0	0	0	0.0032746	3	1954	1905;1954;2005		100.09	32.01	1	727260			48847	4052;11723	28053	28054	59645;59646;59647	59646					0.0854604682289164
TPKKLGNSL	9	Unmodified	_TPKKLGNSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2899169921875	2	479.290017	956.565481	-0.075417	-3.6147E-05	-0.0013878	-6.6515E-07	-0.076805	-3.6812E-05	479.2899475661976	18.472	0.89968	18.414	18.059	18.958	-0.058174					76	31	4	0	0	0	0.001957	1	1944	1944		110.55	35.624	1	941330			48848	4052;11723	28053	28054	59648	59648					0.0854604682289164
TPKKSIGK	8	Unmodified	_TPKKSIGK_					0	0	0			REV__L1M5_dup24793|chr7:135244558-135245275:-|1.2017468508099545|0.0705357099877845|4.09|518.0|18|3|sense	REV__L1M5_dup24793|chr7:135244558-135245275:-|1.2017468508099545|0.0705357099877845|4.09|518.0|18|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.548828125	2	429.774003	857.533452	-0.25652	-0.00011024	-0.25985	-0.00011168	-0.51637	-0.00022192	429.77383762747127	16.859	0.40822	16.745	16.56	16.968	-0.11434					20	14	2	0	0	0	0.34092	1	1413	1413		8.5933	0	1	41402	+		48849	22780	28054	28055	59649	59649					0.09898679139746491
TPKKSIGK	8	Unmodified	_TPKKSIGK_					0	0	0			REV__L1M5_dup24793|chr7:135244558-135245275:-|1.2017468508099545|0.0705357099877845|4.09|518.0|18|3|sense	REV__L1M5_dup24793|chr7:135244558-135245275:-|1.2017468508099545|0.0705357099877845|4.09|518.0|18|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.5490417480469	2	429.774003	857.533452	-0.029069	-1.2493E-05	-0.53712	-0.00023084	-0.56619	-0.00024333	429.7737245489739	16.798	0.38833	16.735	16.526	16.915	-0.062534					19	13	2	0	0	0	0.34092	1	1413	1413		4.756	0	1	57691	+		48850	22780	28054	28055	59650	59650					0.09898679139746491
TPKLLFYPSL	10	Unmodified	_TPKLLFYPSL_					0	0	0			REV__HEATR1|p.A110T|1|0.12|ENSG00000119285|chr1:236603191-236603191|C/T|missense_variant	REV__HEATR1|p.A110T|1|0.12|ENSG00000119285|chr1:236603191-236603191|C/T|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8453979492188	2	589.844625	1177.6747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.71	1	116.73	116.23	117.23	0.020988								0	0	0	0.38166	1	30276	30276		1.4819	0	1		+		48851	22736	28055	28056	59651	59651					0.09296632722384857
TPKLRSTRLR	10	Unmodified	_TPKLRSTRLR_					0	0	0		nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.3847045898438	2	614.385845	1226.75714	0.2672	0.00016416	-1.8542	-0.0011392	-1.587	-0.00097505	614.3844264884223	90.475	0.36667	90.475	90.402	90.769	0					41	27	2	0	0	0	0.38773	1	23981	23981		5.7319	0.83484	1	338380			48852	1161	28056	28057	59652	59652					0.15282967573875794
TPKNQCNSHC	10	Unmodified	_TPKNQCNSHC_					0	0	0			REV__ENSG00000129534|ENST00000310806|MIS18BP1	REV__ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.2373657226562	2	566.237132	1130.45971	0.13115	7.4263E-05	-0.088829	-5.0298E-05	0.042322	2.3964E-05	566.2372387877348	14.866	0.53415	14.756	14.587	15.121	-0.10981					49	18	5	0	0	0	0.33104	1	865	865		16.149	1.3108	1	412970	+		48853	15420	28057	28058	59653	59653					-0.10029980356534907
TPKNQCNSHC	10	Unmodified	_TPKNQCNSHC_					0	0	0			REV__ENSG00000129534|ENST00000310806|MIS18BP1	REV__ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.2371826171875	2	566.237132	1130.45971	-0.046223	-2.6173E-05	-0.14935	-8.4569E-05	-0.19558	-0.00011074	566.2372734818888	14.926	0.60119	14.861	14.646	15.247	-0.064413					51	20	4	0	0	0	0.35637	1	866	866		11.495	0.67078	1	396800	+		48854	15420	28057	28058	59654	59654					-0.10029980356534907
TPKNQRGL	8	Unmodified	_TPKNQRGL_					0	0	0		ENST00000566196.5_1_16:8896110-8896212:+|nuORF	ENST00000566196.5_1_16:8896110-8896212:+|nuORF	ENST00000566196.5_1_16:8896110-8896212:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2642517089844	2	457.264333	912.514114	0.16498	7.5439E-05	0.035946	1.6437E-05	0.20093	9.1876E-05	457.26424841953207	71.499	1.9033	71.499	70.847	72.75	0					207	68	4	0	0	0	0.44734	2	18278	18050;18278		6.7232	0.38484	1	2529800			48855	11976	28058	28059	59655;59656	59656					0.054357228488470355
TPKNQRGL	8	Unmodified	_TPKNQRGL_					0	0	0		ENST00000566196.5_1_16:8896110-8896212:+|nuORF	ENST00000566196.5_1_16:8896110-8896212:+|nuORF	ENST00000566196.5_1_16:8896110-8896212:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.26373291015625	2	457.264333	912.514114	0.20539	9.3919E-05	-0.038011	-1.7381E-05	0.16738	7.6538E-05	457.26422440151435	71.455	1.9166	71.511	70.875	72.792	0.056572					223	69	4	0	0	0	0.44389	4	18031	18031;18081;18130;18470		7.9102	1.4925	1	2592300			48856	11976	28058	28059	59657;59658;59659;59660	59657					0.054357228488470355
TPKNQRGL	8	Unmodified	_TPKNQRGL_					0	0	0		ENST00000566196.5_1_16:8896110-8896212:+|nuORF	ENST00000566196.5_1_16:8896110-8896212:+|nuORF	ENST00000566196.5_1_16:8896110-8896212:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2640380859375	2	457.264333	912.514114	0.25545	0.00011681	-0.030079	-1.3754E-05	0.22537	0.00010306	457.264237516888	71.611	2.0764	71.584	70.663	72.74	-0.027275					256	74	5	0	0	0	0.44389	1	18044	18044		7.9102	1.187	1	2893400			48857	11976	28058	28059	59661	59661					0.054357228488470355
TPKNRSGHVK	10	Unmodified	_TPKNRSGHVK_					0	0	0			REV__ENSG00000171094|ENST00000389048|ALK	REV__ENSG00000171094|ENST00000389048|ALK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3224487304688	2	562.320171	1122.62579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.354	1	93.353	92.853	93.853	-0.00051117								0	0	0	0.37807	1	24857	24857		2.9952	0	1		+		48858	17618	28059	28060	59662	59662					0.06938157205991047
TPKNTKQKT	9	Unmodified	_TPKNTKQKT_					0	0	0			REV__PRKCH|p.T601Lfs*9|1|0.28|ENSG00000027075|chr14:61547781-61547781|G/-|frameshift_variant	REV__PRKCH|p.T601Lfs*9|1|0.28|ENSG00000027075|chr14:61547781-61547781|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3037109375	2	523.303655	1044.59276	0.35197	0.00018419	-0.31839	-0.00016661	0.033581	1.7573E-05	523.3033075822935	76.328	1.651	76.381	75.944	77.595	0.053413					205	58	5	0	0	0	0.33508	1	19627	19627		3.5965	0	1	2738400	+		48859	13483	28060	28061	59663	59663					0.07224530363282611
TPKNTSVSL	9	Unmodified	_TPKNTSVSL_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7637939453125	2	473.763832	945.513111	0.049346	2.3379E-05	0.13224	6.2649E-05	0.18158	8.6027E-05	473.7638278548894	26.931	0.91574	26.931	26.673	27.589	0					73	31	4	0	0	0	0.01909	1	4475	4475		65.474	19.734	1	929440			48860	12721	28061	28062	59664	59664					0.03817463689279066
TPKNTSVSL	9	Unmodified	_TPKNTSVSL_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7639465332031	2	473.763832	945.513111	0.13947	6.6078E-05	0.082089	3.8891E-05	0.22156	0.00010497	473.76381208448277	26.962	0.90603	26.94	26.681	27.587	-0.021412					70	31	4	0	0	0	0.01909	2	4536	4483;4536		65.474	9.2966	1	933970			48861	12721	28061	28062	59665;59666	59666					0.03817463689279066
TPKNTSVSL	9	Unmodified	_TPKNTSVSL_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7640075683594	2	473.763832	945.513111	0.2738	0.00012972	-0.029287	-1.3875E-05	0.24451	0.00011584	473.7637482090411	26.973	0.81826	26.961	26.681	27.499	-0.01156					72	28	4	0	0	0	0.023171	2	4526	4480;4526		62.869	14.789	1	938610			48862	12721	28061	28062	59667;59668	59668					0.03817463689279066
TPKPLIRRQ	9	Unmodified	_TPKPLIRRQ_					0	0	0			REV__ENST00000426405.1_1_X:73629614-73629932:+|nuORF	REV__ENST00000426405.1_1_X:73629614-73629932:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.9956665039062	2	554.851107	1107.68766	0.24971	0.00013855	-0.95945	-0.00053235	-0.70974	-0.0003938	554.8503233547171	98.031	0.031357	98.024	98.004	98.035	-0.0068283					4	2	2	0	0	0	0.25988	1	26252	26252		3.9444	0.3479	1	112460	+		48863	17673	28062	28063	59669	59669					0.13812508625142073
TPKPLRRQ	8	Unmodified	_TPKPLRRQ_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.31011962890625	2	498.309075	994.603597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.223	1	94.223	93.723	94.723	0								0	0	0	0.37183	1	25123	25123		4.756	0	1				48864	1472	28063	28064	59670	59670					0.1060797752822964
TPKPPSQAL	9	Unmodified	_TPKPPSQAL_					0	0	0		nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1;PLCB1|p.L966Ffs*11|1|0.05|ENSG00000182621|chr20:8765325-8765326|-/CTTA|frameshift_variant	nc|ENSG00000182621|Q9NQ66-2|PLCB1	nc|ENSG00000182621|Q9NQ66-2|PLCB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.5649108886719	2	469.768917	937.523281	0.16049	7.5395E-05	-0.31925	-0.00014997	-0.15875	-7.4578E-05	469.76869175905375	30.101	0.73293	30.101	29.686	30.418	0					38	25	2	0	0	0	0.2422	1	5450	5450		19.362	5.4559	1	195520			48865	7304	28064	28065	59671	59671					0.05202071414510101
TPKPPSQAL	9	Unmodified	_TPKPPSQAL_					0	0	0		nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1;PLCB1|p.L966Ffs*11|1|0.05|ENSG00000182621|chr20:8765325-8765326|-/CTTA|frameshift_variant	nc|ENSG00000182621|Q9NQ66-2|PLCB1	nc|ENSG00000182621|Q9NQ66-2|PLCB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.27679443359375	2	469.768917	937.523281	0.18564	8.7207E-05	-0.37631	-0.00017678	-0.19067	-8.9572E-05	469.76862433281156	30.134	0.82202	30.162	29.701	30.523	0.027946					47	28	2	0	0	0	0.23749	1	5523	5523		20.415	1.1575	1	167830			48866	7304	28064	28065	59672	59672					0.05202071414510101
TPKPPSQAL	9	Unmodified	_TPKPPSQAL_					0	0	0		nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1;PLCB1|p.L966Ffs*11|1|0.05|ENSG00000182621|chr20:8765325-8765326|-/CTTA|frameshift_variant	nc|ENSG00000182621|Q9NQ66-2|PLCB1	nc|ENSG00000182621|Q9NQ66-2|PLCB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.5649108886719	2	469.768917	937.523281	-0.082736	-3.8867E-05	-0.53181	-0.00024983	-0.61455	-0.00028869	469.7687168428925	30.119	0.6629	30.146	29.759	30.422	0.027157					36	22	2	0	0	0	0.24924	1	5431	5431		14.405	3.5815	1	185880			48867	7304	28064	28065	59673	59673					0.05202071414510101
TPKRAVKFF	9	Unmodified	_TPKRAVKFF_					0	0	0		nc|ENSG00000183032|Q9BQT8-2|SLC25A21;ENSG00000183032|ENST00000331299|SLC25A21	nc|ENSG00000183032|Q9BQT8-2|SLC25A21	nc|ENSG00000183032|Q9BQT8-2|SLC25A21	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.3322143554688	2	547.329476	1092.6444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.984	1	93.983	93.483	94.483	-0.00051117								0	0	0	0.24715	1	25049	25049		7.2892	2.5332	1				48868	7340	28065	28066	59674	59674					0.10178318847852097
TPKRLRLQ	8	Unmodified	_TPKRLRLQ_					0	0	0			REV__ENST00000521025.1_1_8:22472145-22472547:-|nuORF	REV__ENST00000521025.1_1_8:22472145-22472547:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2556457519531	2	506.324725	1010.6349	0.085059	4.3068E-05	-0.20592	-0.00010426	-0.12086	-6.1192E-05	506.3244099663359	15.599	0.43767	15.489	15.285	15.723	-0.10981					20	14	2	0	0	0	0.34437	1	1041	1041		0.69038	0	1	26066	+		48869	21895	28066	28067	59675	59675					0.1300055056229894
TPKSVRIHYPK	11	Unmodified	_TPKSVRIHYPK_					0	0	0			REV__ENSG00000117593|ENST00000649689|DARS2	REV__ENSG00000117593|ENST00000649689|DARS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.9102478027344	3	442.594461	1324.76155	-1.2858	-0.00056908	0.41431	0.00018337	-0.87146	-0.0003857	442.59454423599	34.873	0.41891	34.948	34.763	35.182	0.075306					24	14	3	0	0	0	0.33169	1	6986	6986		0.29564	0	1	88041	+		48870	14978	28067	28068	59676	59676					0.11216431996786014
TPKWKIFVHK	10	Unmodified	_TPKWKIFVHK_					0	0	0			REV__ENST00000326793.10_2_3:194999577-194999712:-|nuORF	REV__ENST00000326793.10_2_3:194999577-194999712:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.3844604492188	2	642.384783	1282.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.81	1	94.81	94.31	95.31	0								0	0	0	0.38166	1	25298	25298		1.4819	0	1		+		48871	20005	28068	28069	59677	59677					0.1249453883606293
TPKWLVGI	8	Unmodified	_TPKWLVGI_					0	0	0			REV__nc|ENSG00000165271|Q9H6R4-4|NOL6	REV__nc|ENSG00000165271|Q9H6R4-4|NOL6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2641906738281	2	457.278921	912.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.694	1	84.681	84.181	85.181	-0.01284								0	0	0	0.35663	1	22202	22202		11.64	3.047	1		+		48872	17222	28069	28070	59678	59678					0.08351867145142933
TPKWRMVKL	9	Unmodified	_TPKWRMVKL_					0	0	0			REV__ENST00000492807.6_1_6:146480699-146625814:+|nuORF	REV__ENST00000492807.6_1_6:146480699-146625814:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.8446655273438	2	579.844436	1157.67432	0.28942	0.00016782	0.24479	0.00014194	0.53422	0.00030976	579.8443354772405	92.514	0.68198	92.603	92.23	92.912	0.089195					80	50	2	0	0	0	0.34681	1	24526	24526		1.8442	0	1	282530	+		48873	21626	28070	28071	59679	59679					0.10178934521536576
TPLASFTTV	9	Unmodified	_TPLASFTTV_					0	0	0		ENSG00000112983|ENST00000254900|BRD8;BRD8|p.D891Tfs*22|1|0.26|ENSG00000112983|chr5:138152667-138152667|C/-|frameshift_variant;nc|ENSG00000112983|Q9H0E9-2|BRD8	ENSG00000112983|ENST00000254900|BRD8	ENSG00000112983|ENST00000254900|BRD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7556457519531	2	468.755475	935.496398	0.16292	7.637E-05	0.14663	6.8733E-05	0.30955	0.0001451	468.7554246665123	62.954	0.70378	62.945	62.705	63.408	-0.0085526					54	25	4	0	0	0	0.074331	1	15589	15589		61.357	13.012	1	876050			48874	2468	28071	28072	59680	59680					0.02606962803326951
TPLASFTTV	9	Unmodified	_TPLASFTTV_					0	0	0		ENSG00000112983|ENST00000254900|BRD8;BRD8|p.D891Tfs*22|1|0.26|ENSG00000112983|chr5:138152667-138152667|C/-|frameshift_variant;nc|ENSG00000112983|Q9H0E9-2|BRD8	ENSG00000112983|ENST00000254900|BRD8	ENSG00000112983|ENST00000254900|BRD8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	468.755475	935.496398	0.1584	7.4249E-05	0.15409	7.2231E-05	0.31249	0.00014648	468.75547273633475	62.879	0.56843	62.975	62.688	63.256	0.095722	0.0059897	-3.9236E-05	NaN	52.268	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	844670			48875	2468	28071	28072							0.02606962803326951
TPLFGVVEQM	10	Unmodified	_TPLFGVVEQM_					0	0	0		ENSG00000186190|ENST00000375494|BPIFB3	ENSG00000186190|ENST00000375494|BPIFB3	ENSG00000186190|ENST00000375494|BPIFB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.75244140625	2	560.788992	1119.56343	0.40403	0.00022658	-3.8604	-0.0021649	-3.4563	-0.0019383	560.7870750891987	19.953	0.51921	19.837	19.579	20.098	-0.11592					23	17	2	0	0	0	0.32072	1	2386	2386		2.9952	0.69251	1	31216			48876	7600	28072	28073	59681	59681					0.008432500227854689
TPLGERSV	8	Unmodified	_TPLGERSV_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.548828125	2	429.737617	857.460681	-0.26275	-0.00011291	-0.76555	-0.00032898	-1.0283	-0.0004419	429.73762161968364	16.067	0.91945	15.953	15.692	16.611	-0.11434					40	31	2	0	0	0	0.34046	1	1413	1413		5.2307	0	1	67279			48877	3583	28073	28074	59682	59682					0.026249253463333844
TPLKKFLLK	9	Unmodified	_TPLKKFLLK_					0	0	0		ACSL5|p.V586Ffs*30|1|0.03|ENSG00000197142|chr10:112426275-112426276|-/TTCTTTTCTCACCATATATTTTCAACACCCATGGAACT|frameshift_variant;nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5	ACSL5|p.V586Ffs*30|1|0.03|ENSG00000197142|chr10:112426275-112426276|-/TTCTTTTCTCACCATATATTTTCAACACCCATGGAACT|frameshift_variant	ACSL5|p.V586Ffs*30|1|0.03|ENSG00000197142|chr10:112426275-112426276|-/TTCTTTTCTCACCATATATTTTCAACACCCATGGAACT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7958984375	2	544.365527	1086.7165	0.70601	0.00038432	-0.16763	-9.1253E-05	0.53837	0.00029307	544.3651179034432	36.682	0.46592	36.77	36.566	37.032	0.087406					22	16	2	0	0	0	0.25879	1	7464	7464		4.756	1.1595	1	122470			48878	6	28074	28075	59683	59683					0.1766123320155657
TPLKKTKAL	9	Unmodified	_TPLKKTKAL_					0	0	0		ENSG00000135677|ENST00000258145|GNS	ENSG00000135677|ENST00000258145|GNS	ENSG00000135677|ENST00000258145|GNS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2591552734375	2	500.331685	998.648816	0.069442	3.4744E-05	0.20701	0.00010357	0.27645	0.00013832	500.3318268399952	15	0.30889	15	14.845	15.154	0					14	10	2	0	0	0	0.259	1	889	889		5.2969	2.0156	1	60945			48879	3892	28075	28076	59684	59684					0.1494378327075765
TPLQFELCHRK	11	Unmodified	_TPLQFELCHRK_					0	0	0		ENST00000413704.5_1_3:9487316-9517772:+|nuORF;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;ENSG00000168137|ENST00000402198|SETD5	ENST00000413704.5_1_3:9487316-9517772:+|nuORF	ENST00000413704.5_1_3:9487316-9517772:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.27105712890625	3	457.911573	1370.71289	0.51353	0.00023515	-0.10237	-4.6875E-05	0.41116	0.00018828	458.24611865203946	37.482	0.27324	37.482	37.314	37.587	0					12	9	2	0	0	0	0.33236	1	7732	7732		4.4062	1.5629	1	80871			48880	6249	28076	28077	59685	59685					0.0423619536534261
TPLQFELCHRK	11	Unmodified	_TPLQFELCHRK_					0	0	0		ENST00000413704.5_1_3:9487316-9517772:+|nuORF;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;ENSG00000168137|ENST00000402198|SETD5	ENST00000413704.5_1_3:9487316-9517772:+|nuORF	ENST00000413704.5_1_3:9487316-9517772:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	457.911573	1370.71289	0.18725	8.5744E-05	-0.11412	-5.2257E-05	0.073131	3.3487E-05	457.91119332153954	37.376	0.27317	37.463	37.332	37.605	0.08741	0.0050286	-6.7698E-06	NaN	4.4062	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100250			48881	6249	28076	28077							0.0423619536534261
TPLQLRKK	8	Unmodified	_TPLQLRKK_					0	0	0		ENST00000564398.5_1_1:25598999-25633293:+|nuORF;ENST00000527187.5_1_1:25712128-25747316:-|nuORF	ENST00000564398.5_1_1:25598999-25633293:+|nuORF	ENST00000564398.5_1_1:25598999-25633293:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.6737976074219	2	492.321651	982.62875	0.15706	7.7326E-05	-0.088632	-4.3635E-05	0.068433	3.3691E-05	492.3214997217408	15.806	0.2324	15.696	15.61	15.842	-0.10981					13	7	2	0	0	0	0.34437	1	1151	1151		0.69038	0	1	15498			48882	11567	28077	28078	59686	59686					0.13674032330789032
TPLRTMLKNF	10	Unmodified	_TPLRTMLKNF_					0	0	0		Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|3|1|sense	Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|3|1|sense	Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|3|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.2630615234375	3	407.565514	1219.67471	0.14121	5.7553E-05	-3.2058	-0.0013066	-3.0646	-0.001249	407.56449305896933	32.575	0.27935	32.575	32.44	32.72	0					16	9	3	0	0	0	0.3179	1	6184	6184		3.3196	0	1	89351			48883	12353	28078	28079	59687	59687					0.07366309450708286
TPLRVSLV	8	Unmodified	_TPLRVSLV_					0	0	0		ENST00000545991.1_1_12:132626393-132626546:-|nuORF;ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF;ENSG00000185163|ENST00000397333|DDX51	ENST00000545991.1_1_12:132626393-132626546:-|nuORF	ENST00000545991.1_1_12:132626393-132626546:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7818908691406	2	442.781828	883.549102	0.31125	0.00013782	-0.13406	-5.9358E-05	0.1772	7.8459E-05	442.7817065196772	48.772	0.46601	48.772	48.556	49.022	0					22	16	2	0	0	0	0.093768	1	11198	11198		61.602	30.334	1	409260			48884	7513	28079	28080	59688	59688					0.10266965656796856
TPLRVSLV	8	Unmodified	_TPLRVSLV_					0	0	0		ENST00000545991.1_1_12:132626393-132626546:-|nuORF;ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF;ENSG00000185163|ENST00000397333|DDX51	ENST00000545991.1_1_12:132626393-132626546:-|nuORF	ENST00000545991.1_1_12:132626393-132626546:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	442.781828	883.549102	0.30874	0.0001367	0.059742	2.6452E-05	0.36848	0.00016316	442.7817887679319	48.74	0.50399	48.785	48.598	49.102	0.044891	-0.0012361	0.00011011	NaN	61.602	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326400			48885	7513	28079	28080							0.10266965656796856
TPLRVSLV	8	Unmodified	_TPLRVSLV_					0	0	0		ENST00000545991.1_1_12:132626393-132626546:-|nuORF;ENST00000546058.1_1_12:132626393-132626917:-|nuORF;ENST00000329073.8_1_12:132625785-132627411:-|nuORF;ENSG00000185163|ENST00000397333|DDX51	ENST00000545991.1_1_12:132626393-132626546:-|nuORF	ENST00000545991.1_1_12:132626393-132626546:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	442.781828	883.549102	0.20727	9.1777E-05	-0.069424	-3.074E-05	0.13785	6.1037E-05	442.78175813592264	48.77	0.378	48.802	48.576	48.954	0.032043	0.015855	-4.2694E-06	NaN	61.602	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356920			48886	7513	28079	28080							0.10266965656796856
TPLTSFLGWF	10	Unmodified	_TPLTSFLGWF_					0	0	0			REV__ENST00000368006.7_1_1:161091681-161091891:-|nuORF	REV__ENST00000368006.7_1_1:161091681-161091891:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.2413940429688	2	584.8055	1167.59645	0.55276	0.00032326	-1.1603	-0.00067856	-0.60756	-0.00035531	584.804760239046	31.974	0.49699	32.016	31.968	32.465	0.042366					40	17	3	0	0	0	0.31847	1	6136	6136		6.7232	0	1	237810	+		48887	20325	28080	28081	59689	59689					0.019352001371316874
TPLWSPYP	8	Unmodified	_TPLWSPYP_					0	0	0		ENST00000588321.1_1_19:11453493-11456176:-|nuORF	ENST00000588321.1_1_19:11453493-11456176:-|nuORF	ENST00000588321.1_1_19:11453493-11456176:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7439880371094	2	480.744911	959.475269	0.12455	5.9878E-05	-1.564	-0.00075189	-1.4395	-0.00069201	480.74415336496446	17.684	0.57363	17.684	17.477	18.051	0					30	18	2	0	0	0	0.34337	1	1730	1730		5.2307	0.47466	1	69835			48888	12144	28081	28082	59690	59690					-0.00609002505530043
TPMFREYSL	9	Oxidation (M)	_TPM(Oxidation (M))FREYSL_		TPM(1)FREYSL		TPM(48)FREYSL	0	0	1		ENST00000557433.5_1_12:57625333-57628141:+|nuORF;nc|ENSG00000182199|P34897-3|SHMT2;nc|ENSG00000182199|P34897-2|SHMT2;ENSG00000182199|ENST00000328923|SHMT2;ENST00000556825.5_1_12:57623475-57628141:+|nuORF;ENST00000557348.5_1_12:57623887-57628141:+|nuORF;ENST00000554467.5_1_12:57627324-57627898:+|nuORF;ENST00000553837.5_1_12:57625333-57628141:+|nuORF;ENST00000555774.5_1_12:57624752-57628141:+|nuORF	ENST00000557433.5_1_12:57625333-57628141:+|nuORF	ENST00000557433.5_1_12:57625333-57628141:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2763671875	2	580.276249	1158.53795	0.18178	0.00010548	0.043689	2.5352E-05	0.22547	0.00013083	580.2764464772122	49.482	0.85857	49.514	48.954	49.813	0.032043					56	30	3	0	0	0	0.063898	1	11339	11339		47.732	11.605	1	509790			48889	7278	28082	28083	59691	59691		809			-0.03498224499639946
TPMGPGRTV	9	Oxidation (M)	_TPM(Oxidation (M))GPGRTV_		TPM(1)GPGRTV		TPM(110)GPGRTV	0	0	1		ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENSG00000116977|ENST00000366584|LGALS8	ENSG00000116977|ENST00000366584|LGALS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.23681640625	2	466.236927	930.459301	0.0084126	3.9223E-06	0.090137	4.2025E-05	0.098549	4.5947E-05	466.23686699216563	20.197	1.5726	20.197	19.655	21.228	0					133	56	3	0	0	0	0.0016724	5	2490	2399;2443;2490;2530;2577		114.19	60.354	1	1497100			48890	2765	28083	28084	59692;59693;59694;59695;59696	59694		350			-0.008710320140608019
TPMGPGRTV	9	Oxidation (M)	_TPM(Oxidation (M))GPGRTV_		TPM(1)GPGRTV		TPM(110)GPGRTV	0	0	1		ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENSG00000116977|ENST00000366584|LGALS8	ENSG00000116977|ENST00000366584|LGALS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2370300292969	2	466.236927	930.459301	0.2405	0.00011213	-0.061344	-2.8601E-05	0.17916	8.353E-05	466.2367776864219	20.479	1.4707	20.369	19.764	21.234	-0.11003					131	52	3	0	0	0	0.0016724	3	2510	2510;2562;2606		114.19	56.464	1	1586200			48891	2765	28083	28084	59697;59698;59699	59697		350			-0.008710320140608019
TPMGPGRTV	9	Oxidation (M)	_TPM(Oxidation (M))GPGRTV_		TPM(1)GPGRTV		TPM(110)GPGRTV	0	0	1		ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENSG00000116977|ENST00000366584|LGALS8	ENSG00000116977|ENST00000366584|LGALS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.23687744140625	2	466.236927	930.459301	0.49734	0.00023188	-0.34445	-0.0001606	0.15289	7.1281E-05	466.23664596044455	20.28	1.4381	20.227	19.738	21.176	-0.05291					129	51	3	0	0	0	0.0016724	4	2522	2429;2477;2522;2568		114.19	68.487	1	1562700			48892	2765	28083	28084	59700;59701;59702;59703	59702		350			-0.008710320140608019
TPNEERNVM	9	Oxidation (M)	_TPNEERNVM(Oxidation (M))_		TPNEERNVM(1)		TPNEERNVM(72)	0	0	1		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.2509765625	2	553.250763	1104.48697	0.08455	4.6777E-05	0.087028	4.8148E-05	0.17158	9.4926E-05	553.2507938316872	15.618	0.75918	15.554	15.333	16.092	-0.064414					56	25	4	0	0	0	0.015027	1	1068	1068		71.708	48.972	1	266610			48893	7453	28084	28085	59704	59704		825			-0.06109173544518853
TPNKETAGL	9	Unmodified	_TPNKETAGL_					0	0	0		nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	nc|ENSG00000122786|Q05682-4|CALD1	nc|ENSG00000122786|Q05682-4|CALD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7475891113281	2	465.748182	929.481811	0.030625	1.4263E-05	0.24579	0.00011448	0.27642	0.00012874	465.7481983515331	21.603	0.81944	21.603	21	21.819	0					70	28	4	0	0	0	0.022205	2	2889	2889;2905		63.227	23.278	1	259880			48894	3071	28085	28086	59705;59706	59705					0.014248906552097651
TPNKETAGL	9	Unmodified	_TPNKETAGL_					0	0	0		nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	nc|ENSG00000122786|Q05682-4|CALD1	nc|ENSG00000122786|Q05682-4|CALD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7490234375	2	465.748182	929.481811	0.1417	6.5997E-05	0.26031	0.00012124	0.40201	0.00018723	465.74816779860015	21.684	0.73137	21.584	21.073	21.804	-0.10034					67	25	4	0	0	0	0.022205	2	2916	2873;2916		63.227	25.052	1	332510			48895	3071	28085	28086	59707;59708	59708					0.014248906552097651
TPNKETAGL	9	Unmodified	_TPNKETAGL_					0	0	0		nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	nc|ENSG00000122786|Q05682-4|CALD1	nc|ENSG00000122786|Q05682-4|CALD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.74884033203125	2	465.748182	929.481811	0.20336	9.4714E-05	0.3206	0.00014932	0.52396	0.00024403	465.74824891628833	21.596	0.73819	21.546	21.036	21.774	-0.049377					65	25	4	0	0	0	0.027957	1	2895	2895		61.09	22.914	1	332000			48896	3071	28085	28086	59709	59709					0.014248906552097651
TPNLFQESIPF	11	Unmodified	_TPNLFQESIPF_					0	0	0		ENST00000582270.5_1_17:56598597-56598741:-|nuORF	ENST00000582270.5_1_17:56598597-56598741:-|nuORF	ENST00000582270.5_1_17:56598597-56598741:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.91650390625	3	431.555561	1291.64485	0.1447	6.2446E-05	1.9379	0.00083633	2.0826	0.00089878	431.55612715181945	32.116	0.70971	32.116	31.982	32.692	0					45	25	2	0	0	0	0.33182	1	6091	6091		5.4027	1.2132	1	247420			48897	12087	28086	28087	59710	59710					0.010696489863676106
TPNLFQESIPF	11	Unmodified	_TPNLFQESIPF_					0	0	0		ENST00000582270.5_1_17:56598597-56598741:-|nuORF	ENST00000582270.5_1_17:56598597-56598741:-|nuORF	ENST00000582270.5_1_17:56598597-56598741:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	431.555561	1291.64485	0.25359	0.00010944	2.1192	0.00091454	2.3728	0.001024	431.55620652936545	32.158	0.86489	32.201	31.768	32.632	0.042366	0.042367	0.00011161	NaN	5.4027	46	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342670			48898	12087	28086	28087							0.010696489863676106
TPNSLLNAL	9	Unmodified	_TPNSLLNAL_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.7663269042969	2	471.766374	941.518196	0.086159	4.0647E-05	-0.30358	-0.00014322	-0.21742	-0.00010257	471.7661728139343	67.582	0.60175	67.582	67.309	67.911	0					44	20	3	0	0	0	0.088443	1	17019	17019		39.95	0	1	446910			48899	3074	28087	28088	59711	59711					0.04509767551905952
TPNSLLNAL	9	Unmodified	_TPNSLLNAL_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.76605224609375	2	471.766374	941.518196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.614	1	67.692	67.192	68.192	0.078041								0	0	0	0.12746	1	16980	16980		39.95	0	1				48900	3074	28087	28088	59712	59712					0.04509767551905952
TPNSLLNAL	9	Unmodified	_TPNSLLNAL_					0	0	0		nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	nc|ENSG00000122870|Q9H694-2|BICC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.76641845703125	2	471.766374	941.518196	0.1327	6.2603E-05	-0.35435	-0.00016717	-0.22165	-0.00010457	471.76613165576674	67.618	0.5795	67.601	67.292	67.871	-0.016296					33	19	2	0	0	0	0.063853	1	16950	16950		47.749	0	1	317600			48901	3074	28087	28088	59713	59713					0.04509767551905952
TPNTKRFKK	9	Unmodified	_TPNTKRFKK_					0	0	0		ENSG00000122512|ENST00000265849|PMS2	ENSG00000122512|ENST00000265849|PMS2	ENSG00000122512|ENST00000265849|PMS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3360595703125	2	560.33529	1118.65603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.286	1	98.286	97.786	98.786	0								0	0	0	0.25631	1	26294	26294		4.3292	0	1				48902	3047	28088	28089	59714	59714					0.10144515871184012
TPPHWAAYD	9	Unmodified	_TPPHWAAYD_					0	0	0		ENST00000536140.5_1_12:6939022-6940400:+|nuORF;nc|ENSG00000110811|Q8IVL6-2|P3H3;ENSG00000110811|ENST00000290510|P3H3	ENST00000536140.5_1_12:6939022-6940400:+|nuORF	ENST00000536140.5_1_12:6939022-6940400:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8137817382812	2	529.240524	1056.46649	0.8601	0.0004552	1.8988	0.0010049	2.7589	0.0014601	529.2412901400165	77.299	0.3016	77.267	77.154	77.456	-0.031334					15	10	2	0	0	0	0.25066	1	19937	19937		11.64	1.4569	1	98862			48903	2331	28089	28090	59715	59715					-0.059479761420107025
TPPHWAAYD	9	Unmodified	_TPPHWAAYD_					0	0	0		ENST00000536140.5_1_12:6939022-6940400:+|nuORF;nc|ENSG00000110811|Q8IVL6-2|P3H3;ENSG00000110811|ENST00000290510|P3H3	ENST00000536140.5_1_12:6939022-6940400:+|nuORF	ENST00000536140.5_1_12:6939022-6940400:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	529.240524	1056.46649	0.73857	0.00039088	2.637	0.0013956	3.3756	0.0017865	529.241649774613	77.278	0.32177	77.278	77.149	77.47	0	-0.0030958	4.9408E-05	NaN	11.64	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119290			48904	2331	28089	28090							-0.059479761420107025
TPPPPPPTSL	10	Unmodified	_TPPPPPPTSL_					0	0	0		nc|ENSG00000159363|Q9NQ11-2|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7652893066406	2	502.276575	1002.5386	0.7132	0.00035822	-1.8048	-0.0009065	-1.0916	-0.00054828	502.27539279869484	36.294	0.28867	36.38	36.272	36.561	0.08625					12	9	2	0	0	0	0.255	1	7358	7358		21.537	4.9711	1	156200			48905	12785	28090	28091	59716	59716					0.03742938211712499
TPPRLWATFLS	11	Unmodified	_TPPRLWATFLS_					0	0	0			REV__nc|ENSG00000185332|Q8N8V8|TMEM105	REV__nc|ENSG00000185332|Q8N8V8|TMEM105	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.5488586425781	3	430.239796	1287.69756	-0.15665	-6.7397E-05	3.35	0.0014413	3.1933	0.0013739	430.2410701749782	16.736	0.35081	16.736	16.574	16.925	0					15	11	2	0	0	0	0.32774	1	1374	1374		6.6235	0	1	141590	+		48906	23137	28091	28092	59717	59717					0.06521651839852893
TPPVVLRL	8	Unmodified	_TPPVVLRL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.79217529296875	2	447.792195	893.569838	0.54049	0.00024203	-0.48702	-0.00021808	0.053478	2.3947E-05	447.7919032306139	54.45	0.75527	54.45	54.188	54.943	0					68	27	3	0	0	0	0.027083	3	12962	12916;12962;13012		92.491	40.223	1	2151400			48907	7226	28092	28093	59718;59719;59720	59719					0.1187955603646742
TPPVVLRL	8	Unmodified	_TPPVVLRL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.7924499511719	2	447.792195	893.569838	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.987	1	54.987	54.487	55.487	0								0	0	0	0.34492	1	13097	13097		16.942	0	1				48908	7226	28092	28093	59721	59721					0.1187955603646742
TPPVVLRL	8	Unmodified	_TPPVVLRL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.79205322265625	2	447.792195	893.569838	0.44331	0.00019851	-0.35275	-0.00015796	0.090561	4.0552E-05	447.7919252965546	54.415	0.8847	54.478	54.192	55.077	0.063202					81	32	4	0	0	0	0.063256	4	12888	12888;12937;12985;13029		71.922	29.828	1	2281300			48909	7226	28092	28093	59722;59723;59724;59725	59722					0.1187955603646742
TPPVVLRL	8	Unmodified	_TPPVVLRL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000434232.1_1_7:36858782-36858980:+|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.79205322265625	2	447.792195	893.569838	0.49112	0.00021992	-0.42678	-0.00019111	0.064331	2.8807E-05	447.79193677043213	54.522	1.0145	54.506	54.17	55.184	-0.015923					79	36	4	0	0	0	0.04227	3	12960	12910;12960;13008		81.89	38.032	1	2478000			48910	7226	28092	28093	59726;59727;59728	59727					0.1187955603646742
TPQGFRSTL	9	Unmodified	_TPQGFRSTL_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.76947021484375	2	503.769448	1005.52434	0.44885	0.00022612	-0.094973	-4.7844E-05	0.35388	0.00017827	503.76956376302473	35.804	0.70921	35.804	35.547	36.256	0					50	25	3	0	0	0	0.023171	1	7200	7200		62.869	33.787	1	368160			48911	4135	28093	28094	59729	59729					0.021802857834245515
TPQGFRSTL	9	Unmodified	_TPQGFRSTL_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.7700500488281	2	503.769448	1005.52434	0.2889	0.00014554	0.053159	2.678E-05	0.34206	0.00017232	503.7698400210037	35.614	0.66562	35.7	35.504	36.17	0.08625					50	23	3	0	0	0	0.043711	1	7195	7195		55.235	19.108	1	416470			48912	4135	28093	28094	59730	59730					0.021802857834245515
TPQGFRSTL	9	Unmodified	_TPQGFRSTL_					0	0	0		ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	ENSG00000138303|ENST00000672957|ASCC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	503.769448	1005.52434	0.3933	0.00019813	-0.14839	-7.4756E-05	0.24491	0.00012338	503.76945816429173	35.671	0.65681	35.753	35.461	36.117	0.082359	0.00067452	-7.5574E-05	NaN	62.869	44	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523010			48913	4135	28093	28094							0.021802857834245515
TPQKPTTI	8	Unmodified	_TPQKPTTI_					0	0	0		nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55	nc|ENSG00000196352|P08174-6|CD55	nc|ENSG00000196352|P08174-6|CD55	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.71807861328125	2	443.255643	884.496732	0.44314	0.00019643	-0.89148	-0.00039515	-0.44833	-0.00019873	443.25516850614645	20.928	0.56783	20.818	20.466	21.034	-0.11003					23	19	2	0	0	0	0.34247	1	2617	2617		8.5933	0	1	33983			48914	12896	28094	28095	59731	59731					0.049863825231796
TPQPVAERT	9	Unmodified	_TPQPVAERT_					0	0	0			REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.31353759765625	2	499.766906	997.519259	0.15477	7.7351E-05	-1.1887	-0.00059406	-1.0339	-0.00051671	499.76615085021353	25.227	0.59389	25.172	24.888	25.482	-0.055931					28	20	2	0	0	0	0.24688	1	3920	3920		14.838	3.198	1	81297	+		48915	23106	28095	28096	59732	59732					0.020399819208023473
TPQSNRPVM	9	Oxidation (M)	_TPQSNRPVM(Oxidation (M))_		TPQSNRPVM(1)		TPQSNRPVM(140)	0	0	1		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.L681Sfs*33|1|0.27|ENSG00000181222|chr17:7501098-7501098|C/-|frameshift_variant;nc|ENSG00000181222|P24928-2|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2584228515625	2	523.258391	1044.50223	0.17655	9.2379E-05	-0.037594	-1.9672E-05	0.13895	7.2708E-05	523.258402750946	14.643	1.3999	14.643	14.191	15.591	0					117	48	4	0	0	0	0.00012108	3	794	744;794;846		137.42	75.975	1	1298100			48916	7227	28096	28097	59733;59734;59735	59734		805			-0.018242619566535723
TPQSNRPVM	9	Oxidation (M)	_TPQSNRPVM(Oxidation (M))_		TPQSNRPVM(1)		TPQSNRPVM(150)	0	0	1		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.L681Sfs*33|1|0.27|ENSG00000181222|chr17:7501098-7501098|C/-|frameshift_variant;nc|ENSG00000181222|P24928-2|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2584838867188	2	523.258391	1044.50223	0.17608	9.2135E-05	1.569	0.000821	1.7451	0.00091313	523.2584597692785	14.754	1.2573	14.649	14.212	15.469	-0.10466					149	43	7	0	0	0	4.3881E-05	4	829	783;829;871;916		149.91	79.582	1	1573200			48917	7227	28096	28097	59736;59737;59738;59739	59737		805			-0.018242619566535723
TPQSNRPVM	9	Oxidation (M)	_TPQSNRPVM(Oxidation (M))_		TPQSNRPVM(1)		TPQSNRPVM(150)	0	0	1		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A;POLR2A|p.L681Sfs*33|1|0.27|ENSG00000181222|chr17:7501098-7501098|C/-|frameshift_variant;nc|ENSG00000181222|P24928-2|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2584838867188	2	523.258391	1044.50223	0.14735	7.7104E-05	1.4472	0.00075726	1.5945	0.00083436	523.2584525995617	14.788	1.2493	14.724	14.208	15.457	-0.064414					143	43	6	0	0	0	4.3881E-05	4	827	779;827;872;918		149.91	79.582	1	1399600			48918	7227	28096	28097	59740;59741;59742;59743	59741		805			-0.018242619566535723
TPRAAACLLL	10	Unmodified	_TPRAAACLLL_					0	0	0		ENST00000334801.7_1_11:118768023-118768290:-|nuORF	ENST00000334801.7_1_11:118768023-118768290:-|nuORF	ENST00000334801.7_1_11:118768023-118768290:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7981567382812	2	514.799694	1027.58484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.654	1	57.637	57.137	58.137	-0.0172								0	0	0	0.34454	1	13921	13921		17.113	0.1706	1				48919	9473	28097	28098	59744	59744					0.07214679842149962
TPRAPAPRKT	10	Unmodified	_TPRAPAPRKT_					0	0	0			REV__ENST00000417536.5_1_22:38046171-38052013:+|nuORF	REV__ENST00000417536.5_1_22:38046171-38052013:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.8255004882812	2	547.825089	1093.63563	0.55899	0.00030623	-0.3425	-0.00018763	0.21649	0.0001186	547.8248851252444	29.528	0.97922	29.54	29.025	30.004	0.012266					71	33	3	0	0	0	0.36015	1	5264	5264		10.8	0.72558	1	554470	+		48920	14158	28098	28099	59745	59745					0.0925534521136342
TPRARAQL	8	Unmodified	_TPRARAQL_					0	0	0		ENST00000606895.1_1_17:62206992-62207148:-|nuORF	ENST00000606895.1_1_17:62206992-62207148:-|nuORF	ENST00000606895.1_1_17:62206992-62207148:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.264404296875	2	456.772326	911.530098	0.36883	0.00016847	-0.31415	-0.00014349	0.054678	2.4975E-05	456.7721735181043	84.889	0.80777	84.876	84.516	85.323	-0.01284					56	32	2	0	0	0	0.34272	1	22157	22157		4.3292	4.3292	1	334850			48921	12303	28099	28100	59746	59746					0.07079429085752054
TPRARAQL	8	Unmodified	_TPRARAQL_					0	0	0		ENST00000606895.1_1_17:62206992-62207148:-|nuORF	ENST00000606895.1_1_17:62206992-62207148:-|nuORF	ENST00000606895.1_1_17:62206992-62207148:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	456.772326	911.530098	0.37393	0.0001708	-0.10042	-4.587E-05	0.27351	0.00012493	456.77222488556407	84.789	0.99228	84.87	84.422	85.414	0.080879	-0.017027	7.8619E-05	NaN	4.3292	52	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285340			48922	12303	28099	28100							0.07079429085752054
TPRATLITF	9	Unmodified	_TPRATLITF_					0	0	0		IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2978515625	2	510.297842	1018.58113	0.57863	0.00029527	0.13291	6.7823E-05	0.71153	0.00036309	510.2978881511191	54.227	0.78984	54.227	53.946	54.736	0					75	28	3	0	0	0	0.058995	1	12857	12857		49.554	7.7147	1	3252500			48923	7927	28100	28101	59747	59747					0.07258333339950696
TPRATLITF	9	Unmodified	_TPRATLITF_					0	0	0		IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2983703613281	2	510.297842	1018.58113	0.45687	0.00023314	0.27748	0.0001416	0.73435	0.00037474	510.2979933695387	54.173	0.84724	54.236	53.987	54.834	0.063202					84	31	4	0	0	0	0.01909	1	12838	12838		65.474	2.901	1	2905300			48924	7927	28100	28101	59748	59748					0.07258333339950696
TPRDYFFAL	9	Unmodified	_TPRDYFFAL_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.2881469726562	2	565.287474	1128.5604	0.2613	0.00014771	1.0474	0.00059207	1.3087	0.00073978	565.2879367804326	68.076	0.75764	68.076	67.783	68.541	0					47	27	2	0	0	0	0.13748	1	17126	17126		32.786	7.3864	1	941090			48925	1655	28101	28102	59749	59749					0.001257429602674165
TPRDYFFAL	9	Unmodified	_TPRDYFFAL_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.287841796875	2	565.287474	1128.5604	0.43518	0.000246	0.85711	0.00048451	1.2923	0.00073052	565.2877842099707	67.968	0.77235	68.046	67.77	68.543	0.078041					50	27	2	0	0	0	0.088443	1	17101	17101		39.95	14.55	1	981750			48926	1655	28101	28102	59750	59750					0.001257429602674165
TPRDYFFAL	9	Unmodified	_TPRDYFFAL_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.2880249023438	2	565.287474	1128.5604	0.30279	0.00017116	0.85709	0.0004845	1.1599	0.00065566	565.2878659050349	68.164	0.7652	68.145	67.782	68.547	-0.01915					47	26	2	0	0	0	0.18936	1	17120	17120		32.786	7.3864	1	1103600			48927	1655	28101	28102	59751	59751					0.001257429602674165
TPRDYFFAL	9	Unmodified	_TPRDYFFAL_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	565.287474	1128.5604	0.2613	0.00014771	1.0474	0.00059207	1.3087	0.00073978	565.2879367804326	68.076	0.75764	68.076	67.783	68.541	0	-0.013409	0.00014929	NaN	39.95	47	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	941090			48928	1655	28101	28102							0.001257429602674165
TPRDYFFAL	9	Unmodified	_TPRDYFFAL_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	565.287474	1128.5604	0.43518	0.000246	0.85711	0.00048451	1.2923	0.00073052	565.2877842099707	67.968	0.77235	68.046	67.77	68.543	0.078041	-0.042638	-6.5831E-05	NaN	39.95	50	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	981750			48929	1655	28101	28102							0.001257429602674165
TPRGLTHTALI	11	Unmodified	_TPRGLTHTALI_					0	0	0		ENST00000543510.1_1_11:61559928-61560030:-|nuORF	ENST00000543510.1_1_11:61559928-61560030:-|nuORF	ENST00000543510.1_1_11:61559928-61560030:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.7628784179688	2	590.345855	1178.67716	0.38247	0.00022579	-0.47998	-0.00028335	-0.097507	-5.7563E-05	590.3456892795296	81.338	0.69388	81.314	80.992	81.685	-0.02404					60	30	3	0	0	0	0.33149	1	21079	21079		5.2969	0	1	436760			48930	11743	28102	28103	59752	59752					0.09496481180008232
TPRGTLLAF	9	Unmodified	_TPRGTLLAF_					0	0	0		ENST00000495807.1_1_6:31829758-31830565:-|nuORF;ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000495807.1_1_6:31829758-31830565:-|nuORF	ENST00000495807.1_1_6:31829758-31830565:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.28485107421875	2	488.284734	974.554916	0.48561	0.00023711	-0.33628	-0.0001642	0.14933	7.2914E-05	488.2846171310859	53.541	0.9598	53.541	53.228	54.188	0					90	35	3	0	0	0	0.13748	1	12646	12646		32.786	4.2988	1	1241600			48931	8221	28103	28104	59753	59753					0.06662064168483539
TPRGTLLAF	9	Unmodified	_TPRGTLLAF_					0	0	0		ENST00000495807.1_1_6:31829758-31830565:-|nuORF;ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000495807.1_1_6:31829758-31830565:-|nuORF	ENST00000495807.1_1_6:31829758-31830565:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.28515625	2	488.284734	974.554916	0.21631	0.00010562	-0.043226	-2.1107E-05	0.17309	8.4515E-05	488.2847314857574	53.541	1.0446	53.597	53.221	54.265	0.056259					93	39	3	0	0	0	0.16283	1	12631	12631		29.082	0.59474	1	1438000			48932	8221	28103	28104	59754	59754					0.06662064168483539
TPRGTLLAF	9	Unmodified	_TPRGTLLAF_					0	0	0		ENST00000495807.1_1_6:31829758-31830565:-|nuORF;ENST00000480384.1_1_6:31828203-31830565:-|nuORF;ENSG00000204386|ENST00000375631|NEU1	ENST00000495807.1_1_6:31829758-31830565:-|nuORF	ENST00000495807.1_1_6:31829758-31830565:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2851867675781	2	488.284734	974.554916	0.42636	0.00020819	-0.066003	-3.2228E-05	0.36036	0.00017596	488.2847168677615	53.719	1.1797	53.71	53.278	54.458	-0.0096092					91	43	3	0	0	0	0.11461	2	12670	12670;12718		36.127	7.6402	1	1373500			48933	8221	28103	28104	59755;59756	59755					0.06662064168483539
TPRHIIVRF	9	Unmodified	_TPRHIIVRF_					0	0	0		L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|135|3|sense;L1P2_dup354|chr3:177908608-177914071:+|1.579459827711941|0.1324791782257567|3.58|528.0|116|3|sense;L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|120|3|sense;nc|ENSG1000|Q9UN81|L1_ORF1;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|7|1|sense;L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|7|1|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|135|3|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|135|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.845947265625	2	569.845825	1137.6771	0.27982	0.00015945	0.57179	0.00032583	0.85161	0.00048528	569.8461424296413	32.803	0.72903	32.803	32.556	33.285	0					54	25	3	0	0	0	0.10812	1	6320	6320		37.075	23.169	1	443310			48934	12480	28104	28105	59757	59757					0.11376525970695184
TPRHIIVRF	9	Unmodified	_TPRHIIVRF_					0	0	0		L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|135|3|sense;L1P2_dup354|chr3:177908608-177914071:+|1.579459827711941|0.1324791782257567|3.58|528.0|116|3|sense;L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|120|3|sense;nc|ENSG1000|Q9UN81|L1_ORF1;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|7|1|sense;L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|7|1|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|135|3|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|135|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.8460693359375	2	569.845825	1137.6771	0.43836	0.0002498	0.12988	7.4012E-05	0.56824	0.00032381	569.8458598821298	32.672	0.69439	32.727	32.534	33.228	0.055309					43	24	2	0	0	0	0.069258	1	6282	6282		45.74	31.834	1	517220			48935	12480	28104	28105	59758	59758					0.11376525970695184
TPRHIIVRF	9	Unmodified	_TPRHIIVRF_					0	0	0		L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|135|3|sense;L1P2_dup354|chr3:177908608-177914071:+|1.579459827711941|0.1324791782257567|3.58|528.0|116|3|sense;L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|120|3|sense;nc|ENSG1000|Q9UN81|L1_ORF1;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|7|1|sense;L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|7|1|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|135|3|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|135|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.8461303710938	2	569.845825	1137.6771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.747	1	32.801	32.301	33.301	0.054371								0	0	0	0.12621	1	6270	6270		40.239	26.333	1				48936	12480	28104	28105	59759	59759					0.11376525970695184
TPRIGPKVSL	10	Unmodified	_TPRIGPKVSL_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.33203125	2	534.332216	1066.64988	0.41267	0.0002205	-0.013609	-7.2718E-06	0.39906	0.00021323	534.3321610657837	38.027	0.47739	38.125	37.871	38.348	0.097527					29	16	2	0	0	0	0.324	1	7908	7908		17.443	2.6044	1	310390			48937	591	28105	28106	59760	59760					0.11921997639660731
TPRIGPKVSL	10	Unmodified	_TPRIGPKVSL_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	534.332216	1066.64988	0.48055	0.00025677	-0.36226	-0.00019357	0.11828	6.3202E-05	534.3319297357898	38.152	0.53922	38.152	37.895	38.434	0	0.015847	-0.00030419	NaN	17.443	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239470			48938	591	28105	28106							0.11921997639660731
TPRIGPKVSL	10	Unmodified	_TPRIGPKVSL_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	534.332216	1066.64988	0.39263	0.00020979	0.08406	4.4916E-05	0.47669	0.00025471	534.3322219464502	38.04	0.44076	38.131	37.959	38.399	0.090881	-0.0047421	0.00017278	NaN	17.443	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298980			48939	591	28105	28106							0.11921997639660731
TPRIPSRLL	9	Unmodified	_TPRIPSRLL_					0	0	0		ENST00000510359.1_1_5:106716958-106724204:-|nuORF;ENSG00000184349|ENST00000333274|EFNA5	ENST00000510359.1_1_5:106716958-106724204:-|nuORF	ENST00000510359.1_1_5:106716958-106724204:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8324584960938	2	526.832383	1051.65021	0.31723	0.00016713	-0.2013	-0.00010605	0.11594	6.108E-05	526.8322805342216	42.634	1.1967	42.719	42.378	43.575	0.085201					101	43	4	0	0	0	0.15763	1	9298	9298		29.841	12.728	1	1537400			48940	7446	28106	28107	59761	59761					0.12645417359499334
TPRIPSRLL	9	Unmodified	_TPRIPSRLL_					0	0	0		ENST00000510359.1_1_5:106716958-106724204:-|nuORF;ENSG00000184349|ENST00000333274|EFNA5	ENST00000510359.1_1_5:106716958-106724204:-|nuORF	ENST00000510359.1_1_5:106716958-106724204:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8324584960938	2	526.832383	1051.65021	0.38105	0.00020075	-0.28028	-0.00014766	0.10077	5.309E-05	526.8322431702684	42.58	1.1573	42.672	42.26	43.417	0.091358					107	41	4	0	0	0	0.23612	1	9290	9290		18.373	3.1246	1	1459200			48941	7446	28106	28107	59762	59762					0.12645417359499334
TPRKDFTQL	9	Unmodified	_TPRKDFTQL_					0	0	0		ENSG00000156711|ENST00000211287|MAPK13	ENSG00000156711|ENST00000211287|MAPK13	ENSG00000156711|ENST00000211287|MAPK13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3034057617188	2	553.303655	1104.59276	0.43379	0.00024002	-0.36098	-0.00019973	0.072815	4.0289E-05	553.3033889109117	28.973	0.68418	28.973	28.729	29.413	0					53	24	3	0	0	0	0.16039	1	5108	5108		42.312	16.292	1	615300			48942	5252	28107	28108	59763	59763					0.04464530363270569
TPRKDFTQL	9	Unmodified	_TPRKDFTQL_					0	0	0		ENSG00000156711|ENST00000211287|MAPK13	ENSG00000156711|ENST00000211287|MAPK13	ENSG00000156711|ENST00000211287|MAPK13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3224487304688	2	553.303655	1104.59276	0.3484	0.00019277	-0.47295	-0.00026168	-0.12455	-6.8913E-05	553.3033990579247	28.928	0.71397	28.923	28.658	29.372	-0.0042572					54	24	3	0	0	0	0.14306	1	5093	5093		45.74	11.338	1	717010			48943	5252	28107	28108	59764	59764					0.04464530363270569
TPRKDFTQL	9	Unmodified	_TPRKDFTQL_					0	0	0		ENSG00000156711|ENST00000211287|MAPK13	ENSG00000156711|ENST00000211287|MAPK13	ENSG00000156711|ENST00000211287|MAPK13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3037109375	2	553.303655	1104.59276	0.16521	9.1413E-05	-0.21008	-0.00011624	-0.044869	-2.4826E-05	553.3034833435813	28.909	0.65486	28.921	28.673	29.328	0.012049					59	23	3	0	0	0	0.16039	1	5096	5096		42.312	19.576	1	562090			48944	5252	28107	28108	59765	59765					0.04464530363270569
TPRLKTKYNI	10	Unmodified	_TPRLKTKYNI_					0	0	0		ENSG00000113205|ENST00000231130|PCDHB3	ENSG00000113205|ENST00000231130|PCDHB3	ENSG00000113205|ENST00000231130|PCDHB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.22088623046875	3	411.915312	1232.72411	0.12054	4.9653E-05	0.77747	0.00032025	0.89801	0.00036991	411.9152141717863	39.431	0.33544	39.524	39.442	39.777	0.09267					16	11	2	0	0	0	0.31651	1	8312	8312		11.518	2.1348	1	121190			48945	2479	28108	28109	59766	59766					0.11705340731191427
TPRLPARLI	9	Unmodified	_TPRLPARLI_					0	0	0		ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.78759765625	2	518.834926	1035.6553	0.37056	0.00019226	-0.37606	-0.00019511	-0.0054992	-2.8532E-06	518.8347484003342	44.118	0.58883	44.118	43.819	44.408	0					51	21	3	0	0	0	0.18936	1	9737	9737		32.786	14.639	1	780020			48946	811	28109	28110	59767	59767					0.13889721222130902
TPRLPARLI	9	Unmodified	_TPRLPARLI_					0	0	0		ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.8345336914062	2	518.834926	1035.6553	0.37157	0.00019278	-0.38589	-0.00020021	-0.014319	-7.4293E-06	518.8347477263704	44.052	0.7065	44.129	43.79	44.497	0.077515					54	26	3	0	0	0	0.07432	1	9712	9712		43.858	28.011	1	987280			48947	811	28109	28110	59768	59768					0.13889721222130902
TPRLPARLI	9	Unmodified	_TPRLPARLI_					0	0	0		ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.835205078125	2	518.834926	1035.6553	0.29712	0.00015416	-0.28969	-0.0001503	0.0074321	3.856E-06	518.8347945055145	43.982	0.66201	44.066	43.736	44.398	0.083992					65	24	4	0	0	0	0.13748	1	9702	9702		32.786	14.639	1	1074300			48948	811	28109	28110	59769	59769					0.13889721222130902
TPRLPQRNL	9	Unmodified	_TPRLPQRNL_					0	0	0		nc|ENSG00000115935|O43516-2|WIPF1;ENSG00000115935|ENST00000679041|WIPF1;nc|ENSG00000115935|O43516-3|WIPF1	nc|ENSG00000115935|O43516-2|WIPF1	nc|ENSG00000115935|O43516-2|WIPF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.824951171875	2	547.825089	1093.63563	0.60508	0.00033148	-0.42447	-0.00023254	0.18061	9.8943E-05	547.8248394817508	29.604	0.97422	29.604	29.089	30.064	0					75	34	3	0	0	0	0.22061	1	5288	5288		24.021	3.5669	1	499850			48949	2687	28110	28111	59770	59770					0.0925534521136342
TPRLPQRNL	9	Unmodified	_TPRLPQRNL_					0	0	0		nc|ENSG00000115935|O43516-2|WIPF1;ENSG00000115935|ENST00000679041|WIPF1;nc|ENSG00000115935|O43516-3|WIPF1	nc|ENSG00000115935|O43516-2|WIPF1	nc|ENSG00000115935|O43516-2|WIPF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8251953125	2	547.825089	1093.63563	0.3031	0.00016605	-0.011555	-6.3299E-06	0.29155	0.00015972	547.8249877618465	29.597	0.83412	29.611	29.14	29.974	0.013474					62	28	3	0	0	0	0.22674	1	5279	5279		22.736	3.4793	1	625070			48950	2687	28110	28111	59771	59771					0.0925534521136342
TPRLPQRNLSL	11	Unmodified	_TPRLPQRNLSL_					0	0	0		nc|ENSG00000115935|O43516-2|WIPF1;ENSG00000115935|ENST00000679041|WIPF1;nc|ENSG00000115935|O43516-3|WIPF1	nc|ENSG00000115935|O43516-2|WIPF1	nc|ENSG00000115935|O43516-2|WIPF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.2577209472656	3	432.257849	1293.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.625	1	41.625	41.125	42.125	0								0	0	0	0.32297	1	8987	8987		14.171	1.9431	1				48951	2687	28111	28112	59772	59772					0.11659243991425683
TPRLPQRNLSL	11	Unmodified	_TPRLPQRNLSL_					0	0	0		nc|ENSG00000115935|O43516-2|WIPF1;ENSG00000115935|ENST00000679041|WIPF1;nc|ENSG00000115935|O43516-3|WIPF1	nc|ENSG00000115935|O43516-2|WIPF1	nc|ENSG00000115935|O43516-2|WIPF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.2575988769531	3	432.257849	1293.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.791	1	41.791	41.291	42.291	0								0	0	0	0.18908	1	9039	9039		34.674	14.687	1				48952	2687	28111	28112	59773	59773					0.11659243991425683
TPRLPQRNLSL	11	Unmodified	_TPRLPQRNLSL_					0	0	0		nc|ENSG00000115935|O43516-2|WIPF1;ENSG00000115935|ENST00000679041|WIPF1;nc|ENSG00000115935|O43516-3|WIPF1	nc|ENSG00000115935|O43516-2|WIPF1	nc|ENSG00000115935|O43516-2|WIPF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.25775146484375	3	432.257849	1293.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.472	1	41.563	41.063	42.063	0.090252								0	0	0	0.2353	1	8943	8943		29.291	13.753	1				48953	2687	28111	28112	59774	59774					0.11659243991425683
TPRLPQRNLSL	11	Unmodified	_TPRLPQRNLSL_					0	0	0		nc|ENSG00000115935|O43516-2|WIPF1;ENSG00000115935|ENST00000679041|WIPF1;nc|ENSG00000115935|O43516-3|WIPF1	nc|ENSG00000115935|O43516-2|WIPF1	nc|ENSG00000115935|O43516-2|WIPF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.25750732421875	3	432.257849	1293.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.384	1	41.48	40.98	41.98	0.096626								0	0	0	0.27721	1	8907	8907		24.229	12.001	1				48954	2687	28111	28112	59775	59775					0.11659243991425683
TPRNPNSAILL	11	Unmodified	_TPRNPNSAILL_					0	0	0		nc|ENSG00000147642|Q9NX95-5|SYBU;nc|ENSG00000147642|Q9NX95-2|SYBU;nc|ENSG00000147642|Q9NX95-4|SYBU;nc|ENSG00000147642|Q9NX95-3|SYBU;ENSG00000147642|ENST00000276646|SYBU	nc|ENSG00000147642|Q9NX95-5|SYBU	nc|ENSG00000147642|Q9NX95-5|SYBU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.3434448242188	2	598.343312	1194.67207	0.56672	0.00033909	0.2231	0.00013349	0.78982	0.00047258	598.3433430337976	45.105	0.51484	45.105	44.909	45.424	0					41	18	3	0	0	0	0.1269	1	10070	10070		37.771	15.035	1	486630			48955	4776	28112	28113	59776	59776					0.08252177317444875
TPRNPNSAILL	11	Unmodified	_TPRNPNSAILL_					0	0	0		nc|ENSG00000147642|Q9NX95-5|SYBU;nc|ENSG00000147642|Q9NX95-2|SYBU;nc|ENSG00000147642|Q9NX95-4|SYBU;nc|ENSG00000147642|Q9NX95-3|SYBU;ENSG00000147642|ENST00000276646|SYBU	nc|ENSG00000147642|Q9NX95-5|SYBU	nc|ENSG00000147642|Q9NX95-5|SYBU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.3435668945312	2	598.343312	1194.67207	0.60102	0.00035961	0.24118	0.00014431	0.8422	0.00050392	598.3432947293464	45.007	0.55257	45.075	44.817	45.37	0.068573					46	19	3	0	0	0	0.2331	1	10021	10021		28.234	5.0852	1	666580			48956	4776	28112	28113	59777	59777					0.08252177317444875
TPRNPNSAILL	11	Unmodified	_TPRNPNSAILL_					0	0	0		nc|ENSG00000147642|Q9NX95-5|SYBU;nc|ENSG00000147642|Q9NX95-2|SYBU;nc|ENSG00000147642|Q9NX95-4|SYBU;nc|ENSG00000147642|Q9NX95-3|SYBU;ENSG00000147642|ENST00000276646|SYBU	nc|ENSG00000147642|Q9NX95-5|SYBU	nc|ENSG00000147642|Q9NX95-5|SYBU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.343505859375	2	598.343312	1194.67207	0.5321	0.00031838	0.37388	0.00022371	0.90598	0.00054209	598.343344520096	45.034	0.53294	45.109	44.835	45.368	0.07505					46	19	3	0	0	0	0.32895	1	10039	10039		19.626	2.6837	1	530360			48957	4776	28112	28113	59778	59778					0.08252177317444875
TPRPDTLSTI	10	Unmodified	_TPRPDTLSTI_					0	0	0		nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1	nc|ENSG00000187908|Q9UGM3-5|DMBT1	nc|ENSG00000187908|Q9UGM3-5|DMBT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2720947265625	2	550.800946	1099.58734	0.60154	0.00033133	0.28341	0.0001561	0.88495	0.00048743	550.8010474621404	21.456	0.30975	21.355	21.188	21.498	-0.10034					18	10	2	0	0	0	0.31515	1	2855	2855		12.241	2.1667	1	56224			48958	7718	28113	28114	59779	59779					0.04152806780825813
TPRPGSAESAL	11	Unmodified	_TPRPGSAESAL_					0	0	0		nc|ENSG00000099904|Q9ULC8-2|ZDHHC8;ENSG00000099904|ENST00000334554|ZDHHC8;nc|ENSG00000099904|Q9ULC8-3|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.28271484375	2	543.28292	1084.55129	0.63949	0.00034742	-0.48721	-0.0002647	0.15228	8.2728E-05	543.2826034916801	29.669	0.47733	29.669	29.355	29.833	0					25	16	2	0	0	0	0.3429	1	5350	5350		18.373	2.224	1	223310			48959	1503	28114	28115	59780	59780					0.012393496039521779
TPRPGSAESAL	11	Unmodified	_TPRPGSAESAL_					0	0	0		nc|ENSG00000099904|Q9ULC8-2|ZDHHC8;ENSG00000099904|ENST00000334554|ZDHHC8;nc|ENSG00000099904|Q9ULC8-3|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.282958984375	2	543.28292	1084.55129	0.59505	0.00032328	-0.37579	-0.00020416	0.21926	0.00011912	543.2828347801255	29.586	0.55607	29.598	29.361	29.917	0.012266					38	18	3	0	0	0	0.25774	1	5321	5321		26.021	6.6588	1	150630			48960	1503	28114	28115	59781	59781					0.012393496039521779
TPRPTAAEL	9	Unmodified	_TPRPTAAEL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000547667.5_1_12:56531318-56532071:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2641296386719	2	478.263999	954.513445	-0.034415	-1.6459E-05	0.3682	0.0001761	0.33378	0.00015964	478.2640752987577	31.318	0.71205	31.318	31.007	31.719	0					76	25	5	0	0	0	0.0013924	3	5847	5803;5847;5894		117.76	38.164	1	2144700			48961	4253	28115	28116	59782;59783;59784	59783					0.03436883409131042
TPRPTAAEL	9	Unmodified	_TPRPTAAEL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000547667.5_1_12:56531318-56532071:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2640380859375	2	478.263999	954.513445	-0.029894	-1.4297E-05	0.24742	0.00011833	0.21753	0.00010404	478.26405136459374	31.286	0.77168	31.328	30.996	31.768	0.042366					63	27	4	0	0	0	0.0041491	3	5838	5792;5838;5887		93.166	22.834	1	2247500			48962	4253	28115	28116	59785;59786;59787	59786					0.03436883409131042
TPRPTAAEL	9	Unmodified	_TPRPTAAEL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000547667.5_1_12:56531318-56532071:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.26409912109375	2	478.263999	954.513445	0.20654	9.8778E-05	0.069889	3.3425E-05	0.27642	0.0001322	478.26402005465366	31.256	0.81341	31.297	30.988	31.802	0.040991					72	29	4	0	0	0	0.0013924	2	5822	5778;5822		117.76	38.164	1	2060000			48963	4253	28115	28116	59788;59789	59789					0.03436883409131042
TPRRPFEKSRL	11	Unmodified	_TPRRPFEKSRL_					0	0	0		ENSG00000170889|ENST00000302907|RPS9;ENST00000460761.1_1_19:54705052-54705521:+|nuORF	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.9377746582031	3	462.936999	1385.78917	0.016404	7.5939E-06	0.30088	0.00013929	0.31728	0.00014688	462.93749606055593	20.195	2.1442	20.195	19.796	21.94	0					278	77	6	0	0	0	0.021361	4	2523	2424;2473;2523;2565		61.523	41.907	1	17227000			48964	6489	28116	28117	59790;59791;59792;59793	59792					0.1117033525702027
TPRRPFEKSRL	11	Unmodified	_TPRRPFEKSRL_					0	0	0		ENSG00000170889|ENST00000302907|RPS9;ENST00000460761.1_1_19:54705052-54705521:+|nuORF	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.937744140625	3	462.936999	1385.78917	0.26159	0.0001211	0.067509	3.1252E-05	0.3291	0.00015235	462.93737436224944	20.501	2.4229	20.391	19.958	22.381	-0.11003					273	87	6	0	0	0	0.021361	5	2596	2502;2551;2596;2639;2683		61.523	42.66	1	16786000			48965	6489	28116	28117	59794;59795;59796;59797;59798	59796					0.1117033525702027
TPRRPFEKSRL	11	Unmodified	_TPRRPFEKSRL_					0	0	0		ENSG00000170889|ENST00000302907|RPS9;ENST00000460761.1_1_19:54705052-54705521:+|nuORF	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.9372863769531	3	462.936999	1385.78917	0.48839	0.00022609	-0.24774	-0.00011469	0.24065	0.00011141	462.93725247538913	20.352	2.3238	20.299	19.906	22.23	-0.052912					271	83	5	0	0	0	0.051754	5	2461	2461;2507;2553;2603;2653		52.735	34.395	1	15609000			48966	6489	28116	28117	59799;59800;59801;59802;59803	59799					0.1117033525702027
TPRSGEGTVL	10	Unmodified	_TPRSGEGTVL_					0	0	0		nc|ENSG00000048162|Q9Y3C1-3|NOP16	nc|ENSG00000048162|Q9Y3C1-3|NOP16	nc|ENSG00000048162|Q9Y3C1-3|NOP16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.5709533691406	2	508.772188	1015.52982	0.15145	7.7053E-05	-0.067011	-3.4093E-05	0.084438	4.296E-05	508.7720463550203	25.794	0.77632	25.794	25.384	26.161	0					63	26	3	0	0	0	0.27655	1	4165	4165		30.703	11.446	1	564400			48967	12571	28117	28118	59804	59804					0.022679645752418764
TPRSGEGTVL	10	Unmodified	_TPRSGEGTVL_					0	0	0		nc|ENSG00000048162|Q9Y3C1-3|NOP16	nc|ENSG00000048162|Q9Y3C1-3|NOP16	nc|ENSG00000048162|Q9Y3C1-3|NOP16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.772188	1015.52982	0.11485	5.8432E-05	-0.2373	-0.00012073	-0.12245	-6.2301E-05	508.77199459215507	25.84	0.74569	25.817	25.552	26.298	-0.022236	0.015188	-0.00013018	NaN	30.703	62	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	606620			48968	12571	28117	28118							0.022679645752418764
TPRSPTSAF	9	Unmodified	_TPRSPTSAF_					0	0	0		ENST00000413800.5_1_7:99764329-99764836:-|nuORF;nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF	ENST00000413800.5_1_7:99764329-99764836:-|nuORF	ENST00000413800.5_1_7:99764329-99764836:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.24847412109375	2	482.248349	962.482145	0.0014917	7.1937E-07	0.6295	0.00030358	0.63099	0.0003043	482.24855323320014	31.41	0.68807	31.41	30.948	31.636	0					42	24	2	0	0	0	0.029232	1	5848	5848		75.571	23.941	1	693750			48969	10295	28118	28119	59805	59805					-0.0005968962495899177
TPRSPTSAF	9	Unmodified	_TPRSPTSAF_					0	0	0		ENST00000413800.5_1_7:99764329-99764836:-|nuORF;nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF	ENST00000413800.5_1_7:99764329-99764836:-|nuORF	ENST00000413800.5_1_7:99764329-99764836:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.24847412109375	2	482.248349	962.482145	-0.0095445	-4.6028E-06	0.48828	0.00023547	0.47874	0.00023087	482.24851121811713	31.384	0.65605	31.426	30.996	31.652	0.042366					43	23	2	0	0	0	0.081941	1	5831	5831		63.227	23.278	1	626590			48970	10295	28118	28119	59806	59806					-0.0005968962495899177
TPRSPTSAF	9	Unmodified	_TPRSPTSAF_					0	0	0		ENST00000413800.5_1_7:99764329-99764836:-|nuORF;nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF	ENST00000413800.5_1_7:99764329-99764836:-|nuORF	ENST00000413800.5_1_7:99764329-99764836:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.2484130859375	2	482.248349	962.482145	0.23697	0.00011428	0.99539	0.00048003	1.2324	0.0005943	482.2488160701318	31.3	1.0743	31.341	30.933	32.007	0.040991					57	38	2	0	0	0	0.074421	1	5823	5823		67.081	23.308	1	628190			48971	10295	28118	28119	59807	59807					-0.0005968962495899177
TPRSTVGVAVL	11	Unmodified	_TPRSTVGVAVL_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.32763671875	2	550.327131	1098.63971	0.60229	0.00033146	0.88657	0.0004879	1.4889	0.00081936	550.3273796164857	44.554	0.8402	44.554	44.306	45.146	0					78	30	4	0	0	0	0.074971	1	9857	9857		46.022	12.577	1	3114400			48972	2273	28119	28120	59808	59808					0.09433389914420331
TPRSTVGVAVL	11	Unmodified	_TPRSTVGVAVL_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.327392578125	2	550.327131	1098.63971	0.63994	0.00035218	0.2373	0.00013059	0.87724	0.00048277	550.3271039271706	44.491	0.73634	44.559	44.298	45.034	0.068573					72	26	4	0	0	0	0.036631	2	9871	9871;9916		57.108	14.272	1	3430700			48973	2273	28119	28120	59809;59810	59809					0.09433389914420331
TPRSTVGVAVL	11	Unmodified	_TPRSTVGVAVL_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3273315429688	2	550.327131	1098.63971	0.5291	0.00029118	0.25104	0.00013815	0.78014	0.00042933	550.327116394438	44.467	0.75704	44.542	44.285	45.042	0.07505					82	27	4	0	0	0	0.012242	3	9850	9850;9858;9902		64.927	18.904	1	3373600			48974	2273	28119	28120	59811;59812;59813	59811					0.09433389914420331
TPRSYVGVTL	10	Unmodified	_TPRSYVGVTL_					0	0	0		ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.8058471679688	2	546.806031	1091.59751	0.70329	0.00038456	-0.53965	-0.00029508	0.16364	8.948E-05	546.8055460470443	47.47	0.55748	47.47	47.187	47.745	0					32	19	2	0	0	0	0.14624	1	10785	10785		39.213	14.222	1	948470			48975	3912	28120	28121	59814	59814					0.05537414506034111
TPRSYVGVTL	10	Unmodified	_TPRSYVGVTL_					0	0	0		ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	ENSG00000135845|ENST00000344529|PIGC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.805908203125	2	546.806031	1091.59751	1.054	0.00057635	-1.1697	-0.0006396	-0.11567	-6.3249E-05	546.8053533086692	47.439	0.71934	47.483	47.026	47.746	0.04332					38	26	2	0	0	0	0.14624	1	10755	10755		39.213	14.222	1	979590			48976	3912	28120	28121	59815	59815					0.05537414506034111
TPRTNNIEL	9	Unmodified	_TPRTNNIEL_					0	0	0		nc|ENSG00000064102|Q9NVM9-2|INTS13;ENSG00000064102|ENST00000261191|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2855834960938	2	529.285463	1056.55637	-0.33758	-0.00017867	0.58669	0.00031053	0.24911	0.00013185	529.2857288776926	34.502	0.56237	34.502	34.277	34.839	0					45	19	3	0	0	0	0.086462	1	6792	6792		40.239	10.399	1	688620			48977	784	28121	28122	59816	59816					0.030356534665543222
TPRTNNIEL	9	Unmodified	_TPRTNNIEL_					0	0	0		nc|ENSG00000064102|Q9NVM9-2|INTS13;ENSG00000064102|ENST00000261191|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2852172851562	2	529.285463	1056.55637	-0.51892	-0.00027466	0.64763	0.00034278	0.12871	6.8122E-05	529.2857319421653	34.428	0.66192	34.504	34.212	34.874	0.075306					52	23	3	0	0	0	0.15763	1	6751	6751		29.841	6.0508	1	719200			48978	784	28121	28122	59817	59817					0.030356534665543222
TPRTNNIEL	9	Unmodified	_TPRTNNIEL_					0	0	0		nc|ENSG00000064102|Q9NVM9-2|INTS13;ENSG00000064102|ENST00000261191|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2857055664062	2	529.285463	1056.55637	0.086062	4.5552E-05	0.18919	0.00010014	0.27525	0.00014569	529.2854765722508	34.379	0.70233	34.454	34.162	34.865	0.075794					53	24	3	0	0	0	0.073988	2	6739	6739;6801		43.982	10.537	1	652000			48979	784	28121	28122	59818;59819	59818					0.030356534665543222
TPRTYSHIL	9	Unmodified	_TPRTYSHIL_					0	0	0			REV__nc|ENSG00000105287|Q9BZL6-2|PRKD2	REV__nc|ENSG00000105287|Q9BZL6-2|PRKD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.298095703125	2	544.298373	1086.58219	0.62839	0.00034203	-0.26631	-0.00014495	0.36208	0.00019708	544.2980816950324	43.933	1.2316	44.01	43.155	44.387	0.077518					106	45	3	0	0	0	0.22215	1	9544	9544		20.415	2.9719	1	1185600	+		48980	14448	28122	28123	59820	59820					0.04236547708865146
TPRTYSHIL	9	Unmodified	_TPRTYSHIL_					0	0	0			REV__nc|ENSG00000105287|Q9BZL6-2|PRKD2	REV__nc|ENSG00000105287|Q9BZL6-2|PRKD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2980346679688	2	544.298373	1086.58219	0.63634	0.00034636	-0.24961	-0.00013586	0.38673	0.00021049	544.2980877684935	43.801	1.2053	43.885	43.166	44.371	0.083996					102	44	3	0	0	0	0.17277	1	9549	9549		27.629	0	1	1296100	+		48981	14448	28122	28123	59821	59821					0.04236547708865146
TPRVPDNSL	9	Unmodified	_TPRVPDNSL_					0	0	0		nc|ENSG00000109079|Q13829-2|TNFAIP1;ENSG00000109079|ENST00000226225|TNFAIP1	nc|ENSG00000109079|Q13829-2|TNFAIP1	nc|ENSG00000109079|Q13829-2|TNFAIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7668762207031	2	499.766906	997.519259	-0.43575	-0.00021777	0.45254	0.00022616	0.01679	8.3911E-06	499.7670820141905	34.496	0.81387	34.496	34.22	35.033	0					63	28	3	0	0	0	0.00054549	2	6789	6789;6833		128.57	62.116	1	1510600			48982	2233	28123	28124	59822;59823	59822					0.020399819208023473
TPRVPDNSL	9	Unmodified	_TPRVPDNSL_					0	0	0		nc|ENSG00000109079|Q13829-2|TNFAIP1;ENSG00000109079|ENST00000226225|TNFAIP1	nc|ENSG00000109079|Q13829-2|TNFAIP1	nc|ENSG00000109079|Q13829-2|TNFAIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.76678466796875	2	499.766906	997.519259	-0.53317	-0.00026646	0.53582	0.00026779	0.0026475	1.3231E-06	499.7671096386799	34.387	0.94193	34.454	34.121	35.063	0.067734					73	33	3	0	0	0	8.5298E-05	2	6749	6749;6799		143.21	76.757	1	1366000			48983	2233	28123	28124	59824;59825	59824					0.020399819208023473
TPRVPDNSL	9	Unmodified	_TPRVPDNSL_					0	0	0		nc|ENSG00000109079|Q13829-2|TNFAIP1;ENSG00000109079|ENST00000226225|TNFAIP1	nc|ENSG00000109079|Q13829-2|TNFAIP1	nc|ENSG00000109079|Q13829-2|TNFAIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7669982910156	2	499.766906	997.519259	-0.054594	-2.7285E-05	0.090203	4.508E-05	0.035608	1.7796E-05	499.7668889787153	34.353	0.89468	34.421	34.128	35.023	0.067612					70	31	3	0	0	0	1.3973E-05	2	6789	6736;6789		154.75	88.296	1	1489800			48984	2233	28123	28124	59826;59827	59827					0.020399819208023473
TPSASRKSL	9	Unmodified	_TPSASRKSL_					0	0	0		ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	ENSG00000095319|ENST00000372577|NUP188	ENSG00000095319|ENST00000372577|NUP188	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7691955566406	2	473.769448	945.524344	-0.046212	-2.1894E-05	-0.36544	-0.00017313	-0.41165	-0.00019503	473.7692154157154	15.388	0.417	15.323	15.128	15.545	-0.064413					24	13	2	0	0	0	0.24247	1	1021	1021		17.443	8.6972	1	171360			48985	1448	28124	28125	59828	59828					0.049402857834252245
TPSDGRPEL	9	Unmodified	_TPSDGRPEL_					0	0	0		ENSG00000125733|ENST00000313244|TRIP10;nc|ENSG00000125733|Q15642-5|TRIP10;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7591247558594	2	486.243264	970.471974	-0.029398	-1.4295E-05	-0.39751	-0.00019329	-0.42691	-0.00020758	486.24313032563396	28.144	0.50782	28.139	27.851	28.359	-0.0042572					32	17	3	0	0	0	0.19905	1	4858	4858		23.79	5.6434	1	132160			48986	3227	28125	28126	59829	59829					-0.01444297350190027
TPSDGRPEL	9	Unmodified	_TPSDGRPEL_					0	0	0		ENSG00000125733|ENST00000313244|TRIP10;nc|ENSG00000125733|Q15642-5|TRIP10;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	486.243264	970.471974	-0.12285	-5.9734E-05	-0.18437	-8.9647E-05	-0.30721	-0.00014938	486.2431055424701	28.124	0.54869	28.124	27.87	28.418	0	0.00075331	4.3688E-05	NaN	23.79	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116810			48987	3227	28125	28126							-0.01444297350190027
TPSEPHPVL	9	Unmodified	_TPSEPHPVL_					0	0	0		ENSG00000198492|ENST00000373812|YTHDF2;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENST00000604759.1_1_14:39684672-39685536:+|nuORF	ENSG00000198492|ENST00000373812|YTHDF2	ENSG00000198492|ENST00000373812|YTHDF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.75836181640625	2	488.758549	975.502546	0.41264	0.00020168	-0.22546	-0.0001102	0.18718	9.1485E-05	488.75833427122626	35.936	0.61348	35.936	35.719	36.332	0					51	22	3	0	0	0	0.0014051	3	7232	7232;7278;7298		117.6	77.641	1	1170200			48988	8080	28126	28127	59830;59831;59832	59830					0.013814810348435458
TPSEPHPVL	9	Unmodified	_TPSEPHPVL_					0	0	0		ENSG00000198492|ENST00000373812|YTHDF2;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENST00000604759.1_1_14:39684672-39685536:+|nuORF	ENSG00000198492|ENST00000373812|YTHDF2	ENSG00000198492|ENST00000373812|YTHDF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.75823974609375	2	488.758549	975.502546	0.40895	0.00019988	-0.33866	-0.00016552	0.070289	3.4355E-05	488.75838640262685	35.79	0.65156	35.873	35.71	36.362	0.082355					53	23	3	0	0	0	0.00010798	2	7199	7199;7246		139.54	82.073	1	1230900			48989	8080	28126	28127	59833;59834	59833					0.013814810348435458
TPSEPHPVL	9	Unmodified	_TPSEPHPVL_					0	0	0		ENSG00000198492|ENST00000373812|YTHDF2;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENST00000604759.1_1_14:39684672-39685536:+|nuORF	ENSG00000198492|ENST00000373812|YTHDF2	ENSG00000198492|ENST00000373812|YTHDF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.75823974609375	2	488.758549	975.502546	0.41798	0.00020429	-0.40982	-0.0002003	0.0081636	3.9901E-06	488.7583217276954	35.807	0.5736	35.893	35.671	36.244	0.08625					38	20	2	0	0	0	0.00010798	3	7183	7183;7229;7274		139.54	99.587	1	1193400			48990	8080	28126	28127	59835;59836;59837	59835					0.013814810348435458
TPSERITSL	9	Unmodified	_TPSERITSL_					0	0	0		ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	ENSG00000104142|ENST00000220509|VPS18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7651062011719	2	502.274564	1002.53457	0.44209	0.00022205	1.2065	0.00060598	1.6486	0.00082803	502.27514064075257	36.454	0.34118	36.454	36.332	36.673	0					20	11	2	0	0	0	0.19208	1	7404	7404		33.445	33.445	1	147450			48991	1869	28127	28128	59838	59838					0.033408487179940494
TPSFLPTH	8	Unmodified	_TPSFLPTH_					0	0	0		ENST00000484302.3_1_17:46675596-46681926:-|nuORF	ENST00000484302.3_1_17:46675596-46681926:-|nuORF	ENST00000484302.3_1_17:46675596-46681926:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2869873046875	2	450.23471	898.454868	0.50365	0.00022676	-1.2954	-0.00058323	-0.79174	-0.00035647	450.23385138365137	55.752	0.61808	55.752	55.431	56.049	0					28	21	2	0	0	0	0.34218	1	13255	13255		9.3474	0	1	309090			48992	11073	28128	28129	59839	59839					0.001578268346634104
TPSFLPTH	8	Unmodified	_TPSFLPTH_					0	0	0		ENST00000484302.3_1_17:46675596-46681926:-|nuORF	ENST00000484302.3_1_17:46675596-46681926:-|nuORF	ENST00000484302.3_1_17:46675596-46681926:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	450.23471	898.454868	0.50361	0.00022674	-0.83267	-0.0003749	-0.32906	-0.00014815	450.23413804256273	55.664	0.39737	55.735	55.592	55.989	0.070885	-0.0083365	0.00015646	NaN	9.3474	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197990			48993	11073	28128	28129							0.001578268346634104
TPSGSREGSL	10	Unmodified	_TPSGSREGSL_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7461242675781	2	495.74617	989.477788	0.29738	0.00014742	-0.19837	-9.834E-05	0.099011	4.9084E-05	495.7460454202168	18.055	1.0702	18.055	17.719	18.79	0					72	36	3	0	0	0	0.25422	2	1782	1782;1836		26.021	4.4837	1	233540			48994	586	28129	28130	59840;59841	59840					-0.01737198838520726
TPSGSREGSL	10	Unmodified	_TPSGSREGSL_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7464294433594	2	495.74617	989.477788	0.21671	0.00010743	-0.20546	-0.00010186	0.011251	5.5774E-06	495.7460331737395	18.194	1.1247	18.076	17.489	18.614	-0.11739					77	38	3	0	0	0	0.16374	1	1847	1847		37.075	3.6297	1	268190			48995	586	28129	28130	59842	59842					-0.01737198838520726
TPSGSREGSL	10	Unmodified	_TPSGSREGSL_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.74609375	2	495.74617	989.477788	0.096093	4.7638E-05	-0.1298	-6.4348E-05	-0.033706	-1.671E-05	495.74608309756974	18.233	1.1801	18.174	17.474	18.654	-0.058174					75	41	3	0	0	0	0.18709	2	1909	1851;1909		34.222	11.485	1	271480			48996	586	28129	28130	59843;59844	59844					-0.01737198838520726
TPSHVASL	8	Unmodified	_TPSHVASL_					0	0	0			REV__nc|ENSG00000161847|Q8IY67-2|RAVER1	REV__nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.908203125	2	406.21906	810.423567	-0.34024	-0.00013821	-0.037104	-1.5072E-05	-0.37734	-0.00015328	406.2187758273067	30.304	0.62428	30.331	30.109	30.733	0.027157					36	21	2	0	0	0	0.33245	1	5610	5610		19.439	0	1	167800	+		48997	16951	28130	28131	59845	59845					0.0107725380055399
TPSHVASL	8	Unmodified	_TPSHVASL_					0	0	0			REV__nc|ENSG00000161847|Q8IY67-2|RAVER1	REV__nc|ENSG00000161847|Q8IY67-2|RAVER1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	406.21906	810.423567	-0.00029251	-1.1882E-07	-0.78469	-0.00031876	-0.78498	-0.00031887	406.21849229898277	30.38	0.58986	30.408	30.131	30.721	0.027948	0.055917	-0.00035838	NaN	8.5933	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161520	+		48998	16951	28130	28131							0.0107725380055399
TPSLLWACV	9	Unmodified	_TPSLLWACV_					0	0	0		ENST00000489884.5_1_7:150777299-150777671:-|nuORF	ENST00000489884.5_1_7:150777299-150777671:-|nuORF	ENST00000489884.5_1_7:150777299-150777671:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2678527832031	2	495.259871	988.505189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.275	1	35.352	34.852	35.852	0.077377								0	0	0	0.083439	1	7039	7039		50.855	6.448	1				48999	11154	28131	28132	59846	59846					0.010476131681457446
TPSLVKSTSQL	11	Unmodified	_TPSLVKSTSQL_					0	0	0		ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.829833984375	2	580.829703	1159.64485	0.28297	0.00016436	-0.0086488	-5.0235E-06	0.27432	0.00015933	580.8297248235804	40.776	1.1636	40.776	40.307	41.471	0					144	42	5	0	0	0	4.5169E-34	6	8705	8661;8705;8746;8790;8844;8924		227.14	173.82	1	8527400			49000	3870	28132	28133	59847;59848;59849;59850;59851;59852	59848					0.07141648986407745
TPSLVKSTSQL	11	Unmodified	_TPSLVKSTSQL_					0	0	0		ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8298950195312	2	580.829703	1159.64485	0.44838	0.00026043	-0.10068	-5.8476E-05	0.34771	0.00020196	580.8296488414337	40.597	1.2044	40.69	40.254	41.459	0.09267					143	44	5	0	0	0	4.5169E-34	5	8695	8609;8654;8695;8746;8794		227.14	173.82	1	8696700			49001	3870	28132	28133	59853;59854;59855;59856;59857	59855					0.07141648986407745
TPSLVKSTSQL	11	Unmodified	_TPSLVKSTSQL_					0	0	0		ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8298950195312	2	580.829703	1159.64485	0.33061	0.00019203	0.0032241	1.8727E-06	0.33384	0.0001939	580.8297284594457	40.553	1.1133	40.653	40.26	41.373	0.099407					133	40	5	0	0	0	4.5169E-34	5	8646	8601;8646;8688;8740;8791		227.14	173.82	1	9699000			49002	3870	28132	28133	59858;59859;59860;59861;59862	59859					0.07141648986407745
TPSLVWVL	8	Unmodified	_TPSLVWVL_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7696228027344	2	457.770929	913.527304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.082	1	84.082	83.582	84.582	0								0	0	0	0.35014	1	22025	22025		14.582	0	1				49003	1722	28133	28134	59863	59863					0.06708160908226546
TPSPTRYSL	9	Unmodified	_TPSPTRYSL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.23504638671875	2	511.269281	1020.52401	0.57955	0.00029631	-0.5178	-0.00026474	0.061749	3.157E-05	511.26898810357574	36.954	0.55962	36.954	36.673	37.233	0					34	19	2	0	0	0	0.082647	1	7567	7567		45.74	7.5643	1	413830			49004	5064	28134	28135	59864	59864					0.0145686606357458
TPSPTRYSL	9	Unmodified	_TPSPTRYSL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.23504638671875	2	511.269281	1020.52401	0.36876	0.00018854	-0.10045	-5.1358E-05	0.26831	0.00013718	511.2692255118478	36.841	0.81527	36.928	36.626	37.442	0.08741					43	29	2	0	0	0	0.19888	1	7481	7481		20.581	0	1	414590			49005	5064	28134	28135	59865	59865					0.0145686606357458
TPSPTRYSL	9	Unmodified	_TPSPTRYSL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.23516845703125	2	511.269281	1020.52401	0.57717	0.00029509	-0.55986	-0.00028624	0.017305	8.8476E-06	511.2689685565862	36.781	0.73596	36.874	36.687	37.423	0.093014					42	26	2	0	0	0	0.14306	1	7521	7521		38.615	6.5773	1	434200			49006	5064	28134	28135	59866	59866					0.0145686606357458
TPSQRDTV	8	Unmodified	_TPSQRDTV_					0	0	0		ENSG00000100889|ENST00000216780|PCK2;nc|ENSG00000100889|Q16822-2|PCK2;ENST00000558674.5_1_14:24566116-24567637:+|nuORF;ENST00000561050.5_1_14:24566116-24568822:+|nuORF	ENSG00000100889|ENST00000216780|PCK2	ENSG00000100889|ENST00000216780|PCK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2322998046875	2	452.230156	902.445759	-0.010366	-4.6879E-06	-0.3381	-0.0001529	-0.34846	-0.00015759	452.2300374562723	18.751	0.85126	18.634	18.038	18.89	-0.11739					95	29	5	0	0	0	0.45169	1	1963	1963		5.2307	0	1	439340			49007	1641	28135	28136	59867	59867					-0.009365665216705565
TPSRLPGL	8	Unmodified	_TPSRLPGL_					0	0	0		ENST00000336273.7_1_8:98656448-98656532:+|nuORF	ENST00000336273.7_1_8:98656448-98656532:+|nuORF	ENST00000336273.7_1_8:98656448-98656532:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.7445983886719	2	420.750527	839.486502	0.24668	0.00010379	0.73369	0.0003087	0.98037	0.00041249	420.7508119435074	55.73	0.48498	55.73	55.507	55.992	0					24	16	2	0	0	0	0.28696	1	13283	13283		32.305	2.0807	1	299870			49008	9486	28136	28137	59868	59868					0.06033819588606093
TPSSGPTRTS	10	Unmodified	_TPSSGPTRTS_					0	0	0		ENST00000407464.6_1_22:21799320-21799374:+|nuORF	ENST00000407464.6_1_22:21799320-21799374:+|nuORF	ENST00000407464.6_1_22:21799320-21799374:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7461242675781	2	495.74617	989.477788	0.21671	0.00010743	-0.20546	-0.00010186	0.011251	5.5774E-06	495.7460331737395	18.194	1.1247	18.076	17.489	18.614	-0.11739					77	38	3	0	0	0	0.33594	1	1948	1948		15.248	0	1	268190			49009	10231	28137	28138	59869	59869					-0.01737198838520726
TPSSRPASL	9	Unmodified	_TPSSRPASL_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2481994628906	2	458.248349	914.482145	-0.12667	-5.8044E-05	0.3227	0.00014788	0.19603	8.9832E-05	458.2484320597995	22.68	0.60111	22.68	22.476	23.077	0					47	20	3	0	0	0	0.069258	3	3215	3193;3215;3260		45.74	7.9931	1	231720			49010	4168	28138	28139	59870;59871;59872	59871					0.021483103750369992
TPSSRPASL	9	Unmodified	_TPSSRPASL_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.2482604980469	2	458.248349	914.482145	-0.096331	-4.4143E-05	0.078654	3.6043E-05	-0.017677	-8.1003E-06	458.2483345751085	22.805	0.68078	22.717	22.484	23.165	-0.087608					51	23	3	0	0	0	0.09758	2	3250	3250;3310		38.615	11.382	1	246240			49011	4168	28138	28139	59873;59874	59873					0.021483103750369992
TPSSRPASL	9	Unmodified	_TPSSRPASL_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2481689453125	2	458.248349	914.482145	0.029034	1.3305E-05	-0.075663	-3.4673E-05	-0.04663	-2.1368E-05	458.2482331941353	22.798	0.75197	22.753	22.553	23.305	-0.044867					55	26	4	0	0	0	0.086462	1	3245	3245		40.239	8.9709	1	256520			49012	4168	28138	28139	59875	59875					0.021483103750369992
TPSSSNSTSKL	11	Unmodified	_TPSSSNSTSKL_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.7775268554688	2	554.777667	1107.54078	0.27227	0.00015105	-0.68895	-0.00038222	-0.41669	-0.00023117	554.7774646714151	17.584	0.56239	17.584	17.368	17.93	0					29	18	2	0	0	0	0.33902	1	1663	1663		18.721	7.8973	1	78065			49013	1009	28139	28140	59876	59876					-0.008686778411401974
TPSSSNSTSKL	11	Unmodified	_TPSSSNSTSKL_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.7779541015625	2	554.777667	1107.54078	0.1322	7.3344E-05	-0.54927	-0.00030472	-0.41707	-0.00023138	554.7775310902954	17.786	0.48179	17.668	17.414	17.896	-0.11739					29	16	2	0	0	0	0.38765	1	1734	1734		12.856	3.312	1	101740			49014	1009	28139	28140	59877	59877					-0.008686778411401974
TPSSSNSTSKL	11	Unmodified	_TPSSSNSTSKL_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.7775268554688	2	554.777667	1107.54078	0.16477	9.1413E-05	-0.69675	-0.00038654	-0.53197	-0.00029513	554.7773880856139	17.731	0.58824	17.671	17.414	18.002	-0.060429					33	20	2	0	0	0	0.39785	1	1720	1720		11.518	0.69395	1	91802			49015	1009	28139	28140	59878	59878					-0.008686778411401974
TPSSSRLEL	9	Unmodified	_TPSSSRLEL_					0	0	0		AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1	AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant	AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.26788330078125	2	495.266739	988.518924	-0.33493	-0.00016588	1.222	0.00060522	0.88708	0.00043934	495.267539253437	35.358	0.73687	35.358	34.868	35.604	0					67	26	3	0	0	0	0.0066776	1	7048	7048		84.522	20.562	1	484970			49016	41	28140	28141	59879	59879					0.024205622009503713
TPSSSRLEL	9	Unmodified	_TPSSSRLEL_					0	0	0		AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1	AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant	AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.26715087890625	2	495.266739	988.518924	-0.32873	-0.00016281	0.89045	0.00044101	0.56173	0.00027821	495.26737649060703	35.243	0.6591	35.318	34.874	35.533	0.075306					53	23	3	0	0	0	0.010888	2	7058	7005;7058		78.06	20.339	1	578100			49017	41	28140	28141	59880;59881	59881					0.024205622009503713
TPSSSRLEL	9	Unmodified	_TPSSSRLEL_					0	0	0		AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1	AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant	AMBRA1|p.P1002Rfs*17|1|0.19|ENSG00000110497|chr11:46418023-46418024|AG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2668762207031	2	495.266739	988.518924	-0.53685	-0.00026589	0.92939	0.00046029	0.39253	0.00019441	495.26749109648694	35.205	0.69107	35.282	34.837	35.528	0.077377					64	24	3	0	0	0	0.073988	1	6983	6983		43.982	2.0263	1	491230			49018	41	28140	28141	59882	59882					0.024205622009503713
TPSSVRKQL	9	Unmodified	_TPSSVRKQL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7672119140625	2	508.298373	1014.58219	0.088041	4.4751E-05	-0.059487	-3.0237E-05	0.028554	1.4514E-05	508.2983232617932	17.463	0.55723	17.346	17.137	17.694	-0.11739					45	19	3	0	0	0	0.25346	1	1632	1632		10.8	5.0677	1	87417			49019	3572	28141	28142	59883	59883					0.07548547708859132
TPSSVRKQL	9	Unmodified	_TPSSVRKQL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.298373	1014.58219	0.26313	0.00013375	-0.42975	-0.00021844	-0.16662	-8.4692E-05	508.2982135477941	17.377	0.60081	17.316	17.103	17.704	-0.060431	0.00021925	-0.00010128	NaN	14.405	52	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88257			49020	3572	28141	28142							0.07548547708859132
TPSVVIKL	8	Unmodified	_TPSVVIKL_					0	0	0		ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.778564453125	2	428.778754	855.542954	0.077317	3.3152E-05	-0.0032755	-1.4045E-06	0.074042	3.1747E-05	428.7786718315477	65.607	1.2522	65.607	65.293	66.545	0					108	44	4	0	0	0	0.23736	1	16520	16520		37.974	0	1	3866000			49021	8750	28142	28143	59884	59884					0.1094044742526421
TPSVVIKL	8	Unmodified	_TPSVVIKL_					0	0	0		ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.7785949707031	2	428.778754	855.542954	0.076644	3.2863E-05	-0.0074973	-3.2147E-06	0.069147	2.9649E-05	428.77867985223725	65.606	1.174	65.595	65.288	66.462	-0.011337					106	42	4	0	0	0	0.1951	1	16479	16479		43.858	0	1	3856100			49022	8750	28142	28143	59885	59885					0.1094044742526421
TPSYCDESLF	10	Unmodified	_TPSYCDESLF_					0	0	0		nc|ENSG00000139405|Q96K30-2|RITA1;ENSG00000139405|ENST00000548278|RITA1;nc|ENSG00000139405|Q96K30-3|RITA1	nc|ENSG00000139405|Q96K30-2|RITA1	nc|ENSG00000139405|Q96K30-2|RITA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.2897338867188	2	581.242072	1160.46959	0.32386	0.00018824	-3.4781	-0.0020216	-3.1542	-0.0018334	581.240631876128	71.285	0.21927	71.285	71.183	71.402	0					11	7	2	0	0	0	0.31267	1	18114	18114		14.838	4.0143	1	150160			49023	4235	28143	28144	59886	59886					-0.10422513870184957
TPTHMPTI	8	Oxidation (M)	_TPTHM(Oxidation (M))PTI_		TPTHM(1)PTI		TPTHM(85)PTI	0	0	1		ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.1641845703125	2	457.226028	912.437503	0.042523	1.9443E-05	-0.029939	-1.3689E-05	0.012584	5.7539E-06	457.2257761733141	24.524	0.93254	24.524	23.998	24.93	0					55	31	3	0	0	0	0.062079	1	3754	3754		85.357	51.254	1	195890			49024	705	28144	28145	59887	59887		89			-0.02221836762635121
TPTLASTTR	9	Unmodified	_TPTLASTTR_					0	0	0			REV__ENST00000569978.1_1_16:29819442-29819613:+|nuORF	REV__ENST00000569978.1_1_16:29819442-29819613:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.75372314453125	2	474.261456	946.50836	-0.016249	-7.7062E-06	0.28694	0.00013608	0.27069	0.00012838	474.26168636650965	15.543	0.2716	15.479	15.333	15.605	-0.064413					11	8	2	0	0	0	0.29176	1	1050	1050		10.074	1.4806	1	30092	+		49025	22408	28145	28146	59888	59888					0.032965795465202063
TPTNINVSN	9	Unmodified	_TPTNINVSN_					0	0	0		ENSG00000166750|ENST00000299977|SLFN5;nc|ENSG00000166750|Q08AF3-2|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2560119628906	2	480.243264	958.471974	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.883	1	70.883	70.383	71.383	0								0	0	0	0.22933	1	17988	17988		13.042	2.2185	1				49026	6109	28146	28147	59889	59889					-0.008922973501967135
TPTQSERE	8	Unmodified	_TPTQSERE_					0	0	0		nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;nc|ENSG00000038427|P13611-2|VCAN	nc|ENSG00000038427|P13611-5|VCAN	nc|ENSG00000038427|P13611-5|VCAN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.745361328125	2	474.225071	946.435589	-0.13404	-6.3567E-05	0.23289	0.00011044	0.098845	4.6875E-05	474.22507346663775	18.727	0.1716	18.669	18.509	18.681	-0.058174					7	5	2	0	0	0	0.34408	1	2015	2015		2.3027	0	1	23577			49027	591	28147	28148	59890	59890					-0.039771742468929006
TPTVLHGI	8	Unmodified	_TPTVLHGI_					0	0	0		ENSG00000121270|ENST00000356608|ABCC11;nc|ENSG00000121270|Q96J66-2|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.7747802734375	2	419.245078	836.475603	0.19979	8.3759E-05	0.38117	0.0001598	0.58095	0.00024356	419.2451654679567	36.972	0.37884	37.059	36.815	37.193	0.08741					18	13	2	0	0	0	0.34092	1	7539	7539		4.756	0	1	101640			49028	2992	28148	28149	59891	59891					0.050824172143165924
TPVAGSQSL	9	Unmodified	_TPVAGSQSL_					0	0	0		ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENST00000574593.1_1_16:2817540-2819884:+|nuORF	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8882751464844	2	430.229625	858.444697	-0.31802	-0.00013682	0.17834	7.6728E-05	-0.13968	-6.0094E-05	430.22955667223664	34.281	0.67665	34.281	34.048	34.725	0					41	23	3	0	0	0	0.1854	1	6726	6726		25.399	4.9457	1	426800			49029	6227	28149	28150	59892	59892					0.009812191094397349
TPVFVPMVSF	10	Unmodified	_TPVFVPMVSF_					0	0	0			REV__ATMIN|p.L555*|1|0.32|ENSG00000166454|chr16:81044162-81044169|TAAATCAA/-|frameshift_variant	REV__ATMIN|p.L555*|1|0.32|ENSG00000166454|chr16:81044162-81044169|TAAATCAA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.8135375976562	2	562.296453	1122.57835	0.47678	0.00026809	2.1014	0.0011816	2.5782	0.0014497	562.2968796818925	85.287	0.1535	85.274	85.196	85.35	-0.01284					7	5	2	0	0	0	0.31358	1	22377	22377		5.7319	0	1	51299	+		49030	13118	28150	28151	59893	59893					0.021967418907706815
TPVNLSVHSYF	11	Unmodified	_TPVNLSVHSYF_					0	0	0		nc|ENSG00000213047|Q6P3S1-3|DENND1B;nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B	nc|ENSG00000213047|Q6P3S1-3|DENND1B	nc|ENSG00000213047|Q6P3S1-3|DENND1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.26824951171875	3	421.883789	1262.62954	0.42884	0.00018092	-1.3441	-0.00056704	-0.91522	-0.00038612	422.21717311684773	36.783	0.65645	36.876	36.486	37.142	0.093014					47	23	3	0	0	0	0.33056	1	7564	7564		8.7518	1.7147	1	192900			49031	12940	28151	28152	59894	59894					0.008727821891852727
TPVRLPSI	8	Unmodified	_TPVRLPSI_					0	0	0		ENST00000472045.1_1_5:131819645-131819816:-|nuORF;ENSG00000125347|ENST00000245414|IRF1	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7742004394531	2	441.774003	881.533452	0.49888	0.00022039	-0.36852	-0.0001628	0.13037	5.7592E-05	441.7740235111346	51.001	2.4552	51.001	49.953	52.408	0					243	90	4	0	0	0	0.00055232	7	11926	11656;11779;11826;11874;11926;11976;12024		149.91	45.933	1	16418000			49032	3197	28152	28153	59895;59896;59897;59898;59899;59900;59901	59899					0.08794679139748496
TPVRLPSI	8	Unmodified	_TPVRLPSI_					0	0	0		ENST00000472045.1_1_5:131819645-131819816:-|nuORF;ENSG00000125347|ENST00000245414|IRF1	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.774169921875	2	441.774003	881.533452	0.3676	0.00016239	-0.24787	-0.0001095	0.11973	5.2893E-05	441.774061105707	50.957	2.3169	51.004	49.933	52.25	0.046574					234	85	4	0	0	0	0.0015176	7	11904	11657;11771;11810;11855;11904;12010;12062		137.42	37.669	1	16962000			49033	3197	28152	28153	59902;59903;59904;59905;59906;59907;59908	59906					0.08794679139748496
TPVRLPSI	8	Unmodified	_TPVRLPSI_					0	0	0		ENST00000472045.1_1_5:131819645-131819816:-|nuORF;ENSG00000125347|ENST00000245414|IRF1	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7740478515625	2	441.774003	881.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.712	1	50.722	50.222	51.222	0.0095634								0	0	0	2.1011E-05	1	11772	11772		125.53	25.774	1				49034	3197	28152	28153	59909	59909					0.08794679139748496
TPVRLPSI	8	Unmodified	_TPVRLPSI_					0	0	0		ENST00000472045.1_1_5:131819645-131819816:-|nuORF;ENSG00000125347|ENST00000245414|IRF1	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.77410888671875	2	441.774003	881.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.864	1	50.874	50.374	51.374	0.0095634								0	0	0	2.1011E-05	1	11819	11819		125.53	45.933	1				49035	3197	28152	28153	59910	59910					0.08794679139748496
TPVRLPSI	8	Unmodified	_TPVRLPSI_					0	0	0		ENST00000472045.1_1_5:131819645-131819816:-|nuORF;ENSG00000125347|ENST00000245414|IRF1	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7744445800781	2	441.774003	881.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.021	1	51.03	50.53	51.53	0.0095634								0	0	0	2.1011E-05	1	11867	11867		125.53	36.128	1				49036	3197	28152	28153	59911	59911					0.08794679139748496
TPVRLPSI	8	Unmodified	_TPVRLPSI_					0	0	0		ENST00000472045.1_1_5:131819645-131819816:-|nuORF;ENSG00000125347|ENST00000245414|IRF1	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7742004394531	2	441.774003	881.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.171	1	51.181	50.681	51.681	0.0095634								0	0	0	4.56E-06	1	11913	11913		137.42	37.669	1				49037	3197	28152	28153	59912	59912					0.08794679139748496
TPVRLPSI	8	Unmodified	_TPVRLPSI_					0	0	0		ENST00000472045.1_1_5:131819645-131819816:-|nuORF;ENSG00000125347|ENST00000245414|IRF1	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7740478515625	2	441.774003	881.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.329	1	51.338	50.838	51.838	0.0095634								0	0	0	0.0034852	1	11961	11961		106.94	24.411	1				49038	3197	28152	28153	59913	59913					0.08794679139748496
TPVRLPSI	8	Unmodified	_TPVRLPSI_					0	0	0		ENST00000472045.1_1_5:131819645-131819816:-|nuORF;ENSG00000125347|ENST00000245414|IRF1	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7740783691406	2	441.774003	881.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.498	1	51.507	51.007	52.007	0.0095634								0	0	0	0.0069431	1	12013	12013		96.367	28.286	1				49039	3197	28152	28153	59914	59914					0.08794679139748496
TPVRLPSI	8	Unmodified	_TPVRLPSI_					0	0	0		ENST00000472045.1_1_5:131819645-131819816:-|nuORF;ENSG00000125347|ENST00000245414|IRF1	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	ENST00000472045.1_1_5:131819645-131819816:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7745056152344	2	441.774003	881.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.719	1	51.728	51.228	52.228	0.0095634								0	0	0	0.065376	1	12082	12082		67.838	17.905	1				49040	3197	28152	28153	59915	59915					0.08794679139748496
TPVSYPLEL	9	Unmodified	_TPVSYPLEL_					0	0	0		nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7765808105469	2	509.776408	1017.53826	0.32495	0.00016565	0.20676	0.0001054	0.53171	0.00027105	509.7764067310672	70.157	0.94938	70.157	69.59	70.54	0					71	34	3	0	0	0	0.07432	1	17755	17755		43.858	11.553	1	552760			49041	12858	28153	28154	59916	59916					0.0301951849183979
TPVSYPLEL	9	Unmodified	_TPVSYPLEL_					0	0	0		nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7765808105469	2	509.776408	1017.53826	0.25883	0.00013194	0.38772	0.00019765	0.64655	0.0003296	509.7764434708362	70.17	0.86736	70.236	69.856	70.723	0.06604					65	30	3	0	0	0	0.051692	1	17744	17744		52.268	12.311	1	577610			49042	12858	28153	28154	59917	59917					0.0301951849183979
TPVSYPLEL	9	Unmodified	_TPVSYPLEL_					0	0	0		nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	nc|ENSG00000178104|Q5VU43-13|PDE4DIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.77655029296875	2	509.776408	1017.53826	0.28527	0.00014542	0.23357	0.00011907	0.51884	0.00026449	509.7764559655372	70.179	0.91827	70.157	69.858	70.776	-0.022087					61	32	3	0	0	0	0.051692	1	17757	17757		52.268	12.311	1	574930			49043	12858	28153	28154	59918	59918					0.0301951849183979
TPVTPAPVPPF	11	Unmodified	_TPVTPAPVPPF_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.8136596679688	2	561.813325	1121.6121	0.49382	0.00027744	-0.37867	-0.00021274	0.11515	6.4695E-05	561.8132084580287	85.224	0.56908	85.224	85.04	85.609	0					38	21	3	0	0	0	0.37965	1	22388	22388		13.906	0.86358	1	363280			49044	7854	28154	28155	59919	59919					0.05615486654187407
TPYGRPANI	9	Unmodified	_TPYGRPANI_					0	0	0		DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;DENND4A|p.L560Ffs*9|1|0.16|ENSG00000174485|chr15:65717887-65717905|AAATGCCTCTTGGATTTCC/-|frameshift_variant;ENST00000568515.1_1_15:66007788-66048788:-|nuORF	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.78265380859375	2	494.764166	987.513779	0.4409	0.00021814	0.63757	0.00031544	1.0785	0.00053359	494.7644810712312	31.84	0.86419	31.84	31.636	32.5	0					56	30	3	0	0	0	0.13643	1	6059	6059		38.176	16.429	1	1021100			49045	261	28155	28156	59920	59920					0.019523031289850223
TPYGRPANI	9	Unmodified	_TPYGRPANI_					0	0	0		DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;DENND4A|p.L560Ffs*9|1|0.16|ENSG00000174485|chr15:65717887-65717905|AAATGCCTCTTGGATTTCC/-|frameshift_variant;ENST00000568515.1_1_15:66007788-66048788:-|nuORF	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7825622558594	2	494.764166	987.513779	0.48992	0.00024239	0.72187	0.00035716	1.2118	0.00059955	494.7646242261039	31.801	0.78353	31.843	31.624	32.408	0.042364					44	27	3	0	0	0	0.18123	1	6040	6040		27.629	5.8822	1	1547900			49046	261	28155	28156	59921	59921					0.019523031289850223
TPYGRPANI	9	Unmodified	_TPYGRPANI_					0	0	0		DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;DENND4A|p.L560Ffs*9|1|0.16|ENSG00000174485|chr15:65717887-65717905|AAATGCCTCTTGGATTTCC/-|frameshift_variant;ENST00000568515.1_1_15:66007788-66048788:-|nuORF	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	DENND4A|p.E1652Kfs*2|1|0.33|ENSG00000174485|chr15:65667603-65667604|TC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7824401855469	2	494.764166	987.513779	0.38328	0.00018964	0.72752	0.00035995	1.1108	0.00054958	494.7645245373184	31.75	0.7913	31.791	31.559	32.351	0.040991					48	27	2	0	0	0	0.19083	2	6023	6023;6079		24.991	3.6474	1	1081200			49047	261	28155	28156	59922;59923	59922					0.019523031289850223
TPYNSRTV	8	Unmodified	_TPYNSRTV_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.23931884765625	2	469.240524	936.466495	0.13893	6.519E-05	-1.5915	-0.0007468	-1.4526	-0.00068161	469.2398032347913	21.225	0.66057	21.225	20.912	21.573	0					41	22	2	0	0	0	0.3398	1	2736	2736		26.268	7.0112	1	203970			49048	3560	28156	28157	59924	59924					-0.00427976141986619
TPYNSRTV	8	Unmodified	_TPYNSRTV_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	469.240524	936.466495	0.30029	0.00014091	-1.4042	-0.00065893	-1.1039	-0.00051802	469.2402187312067	21.381	0.81703	21.28	20.818	21.635	-0.10034	0.027986	0.00015221	NaN	26.268	51	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252000			49049	3560	28156	28157							-0.00427976141986619
TPYPYYPKV	9	Unmodified	_TPYPYYPKV_					0	0	0		ENSG00000178175|ENST00000318442|ZNF366	ENSG00000178175|ENST00000318442|ZNF366	ENSG00000178175|ENST00000318442|ZNF366	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8038330078125	2	564.292225	1126.5699	0.40445	0.00022823	0.13323	7.5179E-05	0.53768	0.00030341	564.2922967608023	48.672	0.64531	48.672	48.238	48.883	0					52	22	3	0	0	0	0.037019	2	11156	11156;11204		57.722	34.986	1	668930			49050	7041	28157	28158	59925;59926	59925					0.011675112457851355
TPYPYYPKV	9	Unmodified	_TPYPYYPKV_					0	0	0		ENSG00000178175|ENST00000318442|ZNF366	ENSG00000178175|ENST00000318442|ZNF366	ENSG00000178175|ENST00000318442|ZNF366	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.8024291992188	2	564.292225	1126.5699	0.67517	0.00038099	-0.58358	-0.00032931	0.091592	5.1685E-05	564.2920844733621	48.66	0.53913	48.705	48.312	48.851	0.044891					46	19	3	0	0	0	0.09064	1	11155	11155		56.177	30.778	1	356940			49051	7041	28157	28158	59927	59927					0.011675112457851355
TPYPYYPKV	9	Unmodified	_TPYPYYPKV_					0	0	0		ENSG00000178175|ENST00000318442|ZNF366	ENSG00000178175|ENST00000318442|ZNF366	ENSG00000178175|ENST00000318442|ZNF366	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.2933349609375	2	564.292225	1126.5699	0.36158	0.00020404	0.31541	0.00017799	0.677	0.00038203	564.7937467430557	48.571	0.69641	48.603	48.258	48.954	0.032043					43	25	2	0	0	0	0.067563	1	11159	11159		66.457	52.551	1	566710			49052	7041	28157	28158	59928	59928					0.011675112457851355
TPYQKALLT	9	Unmodified	_TPYQKALLT_					0	0	0		ENSG00000153822|ENST00000392671|KCNJ16	ENSG00000153822|ENST00000392671|KCNJ16	ENSG00000153822|ENST00000392671|KCNJ16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.2838745117188	2	517.797675	1033.5808	0.10086	5.2224E-05	-1.4937	-0.00077346	-1.3929	-0.00072123	517.7978954190207	81.755	1.2906	81.824	80.863	82.154	0.068993					79	61	2	0	0	0	0.24289	1	21011	21011		13.042	0	1	325230			49053	5088	28158	28159	59929	59929					0.06534913620089355
TPYQSKWTI	9	Unmodified	_TPYQSKWTI_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.293701171875	2	562.292756	1122.57096	0.51985	0.00029231	-0.35454	-0.00019936	0.16531	9.2951E-05	562.2923712674224	48.17	0.51594	48.17	48.012	48.528	0					25	17	2	0	0	0	0.0040516	1	11015	11015		93.938	61.152	1	492330			49054	3628	28159	28160	59930	59930					0.014577256147049411
TPYQSKWTI	9	Unmodified	_TPYQSKWTI_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	562.292756	1122.57096	0.75382	0.00042387	-0.56999	-0.0003205	0.18382	0.00010336	562.2921921527889	48.067	0.47766	48.114	48.022	48.5	0.047523	-0.0029303	-0.00022813	NaN	93.938	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405910			49055	3628	28159	28160							0.014577256147049411
TPYQSKWTI	9	Unmodified	_TPYQSKWTI_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	562.292756	1122.57096	0.49216	0.00027674	-0.1617	-9.0923E-05	0.33046	0.00018581	562.2925812486749	48.024	0.54626	48.067	47.987	48.533	0.043324	-0.050068	0.00023103	NaN	93.938	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	473470			49056	3628	28159	28160							0.014577256147049411
TPYYLSPEI	9	Unmodified	_TPYYLSPEI_					0	0	0		NEK1|p.I1230Ffs*16|1|0.31|ENSG00000137601|chr4:169400300-169400300|T/-|frameshift_variant;ENST00000509912.5_1_4:170476851-170520268:-|nuORF;nc|ENSG00000137601|Q96PY6-5|NEK1;nc|ENSG00000137601|Q96PY6-4|NEK1;nc|ENSG00000137601|Q96PY6-2|NEK1;nc|ENSG00000137601|Q96PY6-6|NEK1;nc|ENSG00000137601|Q96PY6|NEK1;ENSG00000137601|ENST00000507142|NEK1;nc|ENSG00000197168|Q6P3R8|NEK5;ENSG00000197168|ENST00000684899|NEK5	NEK1|p.I1230Ffs*16|1|0.31|ENSG00000137601|chr4:169400300-169400300|T/-|frameshift_variant	NEK1|p.I1230Ffs*16|1|0.31|ENSG00000137601|chr4:169400300-169400300|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7739868164062	2	541.773865	1081.53318	0.48248	0.00026139	-0.1318	-7.1405E-05	0.35068	0.00018999	541.7737177269355	67.743	0.66547	67.743	67.536	68.202	0					38	23	2	0	0	0	0.027237	2	17068	17017;17068		61.357	26.956	1	1199100			49057	13030	28160	28161	59931;59932	59932					-0.004327853707536633
TPYYLSPEI	9	Unmodified	_TPYYLSPEI_					0	0	0		NEK1|p.I1230Ffs*16|1|0.31|ENSG00000137601|chr4:169400300-169400300|T/-|frameshift_variant;ENST00000509912.5_1_4:170476851-170520268:-|nuORF;nc|ENSG00000137601|Q96PY6-5|NEK1;nc|ENSG00000137601|Q96PY6-4|NEK1;nc|ENSG00000137601|Q96PY6-2|NEK1;nc|ENSG00000137601|Q96PY6-6|NEK1;nc|ENSG00000137601|Q96PY6|NEK1;ENSG00000137601|ENST00000507142|NEK1;nc|ENSG00000197168|Q6P3R8|NEK5;ENSG00000197168|ENST00000684899|NEK5	NEK1|p.I1230Ffs*16|1|0.31|ENSG00000137601|chr4:169400300-169400300|T/-|frameshift_variant	NEK1|p.I1230Ffs*16|1|0.31|ENSG00000137601|chr4:169400300-169400300|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7737426757812	2	541.773865	1081.53318	0.65744	0.00035619	-0.40851	-0.00022132	0.24894	0.00013487	541.7736068705561	67.612	0.68114	67.69	67.488	68.169	0.078041					38	23	2	0	0	0	0.01083	2	16985	16985;17030		78.149	32.128	1	989990			49058	13030	28160	28161	59933;59934	59933					-0.004327853707536633
TPYYLSPEI	9	Unmodified	_TPYYLSPEI_					0	0	0		NEK1|p.I1230Ffs*16|1|0.31|ENSG00000137601|chr4:169400300-169400300|T/-|frameshift_variant;ENST00000509912.5_1_4:170476851-170520268:-|nuORF;nc|ENSG00000137601|Q96PY6-5|NEK1;nc|ENSG00000137601|Q96PY6-4|NEK1;nc|ENSG00000137601|Q96PY6-2|NEK1;nc|ENSG00000137601|Q96PY6-6|NEK1;nc|ENSG00000137601|Q96PY6|NEK1;ENSG00000137601|ENST00000507142|NEK1;nc|ENSG00000197168|Q6P3R8|NEK5;ENSG00000197168|ENST00000684899|NEK5	NEK1|p.I1230Ffs*16|1|0.31|ENSG00000137601|chr4:169400300-169400300|T/-|frameshift_variant	NEK1|p.I1230Ffs*16|1|0.31|ENSG00000137601|chr4:169400300-169400300|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7739868164062	2	541.773865	1081.53318	0.50696	0.00027466	-0.15032	-8.1442E-05	0.35663	0.00019321	541.7736367386691	67.74	0.58969	67.724	67.534	68.124	-0.016296					37	20	2	0	0	0	0.034444	1	17024	17024		58.679	18.721	1	1098200			49059	13030	28160	28161	59935	59935					-0.004327853707536633
TQAETIVSALT	11	Unmodified	_TQAETIVSALT_					0	0	0		ENST00000526631.1_1_11:82985654-82997015:-|nuORF;nc|ENSG00000137500|Q9GZT6-2|CCDC90B;ENSG00000137500|ENST00000529689|CCDC90B	ENST00000526631.1_1_11:82985654-82997015:-|nuORF	ENST00000526631.1_1_11:82985654-82997015:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.7933349609375	2	567.306061	1132.59757	0.50784	0.0002881	0.31944	0.00018122	0.82728	0.00046932	567.3061824675335	32.351	1.1387	32.351	32.064	33.202	0					103	40	4	0	0	0	0.40332	1	6333	6333		10.8	0.72558	1	2015200			49060	4053	28161	28162	59936	59936					0.03657369715392633
TQARLAPL	8	Unmodified	_TQARLAPL_					0	0	0			REV__nc|ENSG00000167483|Q86XR2-6|NIBAN3	REV__nc|ENSG00000167483|Q86XR2-6|NIBAN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7799987792969	2	435.263802	868.513051	0.044771	1.9487E-05	-0.16346	-7.1149E-05	-0.11869	-5.1662E-05	435.2635773965634	36.61	0.70692	36.61	36.332	37.039	0					39	24	2	0	0	0	0.27906	1	7426	7426		34.402	9.4108	1	677350	+		49061	17385	28162	28163	59937	59937					0.07353508479945958
TQATIYVHK	9	Unmodified	_TQATIYVHK_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2555541992188	2	530.792924	1059.57129	0.58364	0.00030979	-0.62174	-0.00033001	-0.038101	-2.0224E-05	530.7926448339108	21.22	0.52046	21.22	21.052	21.573	0					26	17	2	0	0	0	0.2524	1	2801	2801		11.495	3.8858	1	72688			49062	1387	28163	28164	59938	59938					0.04389145334562272
TQATIYVHK	9	Unmodified	_TQATIYVHK_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2554931640625	2	530.792924	1059.57129	0.56063	0.00029758	-0.51368	-0.00027266	0.04695	2.4921E-05	530.79283759679	21.402	0.45632	21.302	21.101	21.557	-0.10034					24	15	2	0	0	0	0.25527	1	2852	2852		8.7454	0	1	70296			49063	1387	28163	28164	59939	59939					0.04389145334562272
TQCFNFIRVL	10	Unmodified	_TQCFNFIRVL_					0	0	0		ENST00000487358.5_1_1:156126263-156128465:+|nuORF;ENST00000470306.5_1_1:156126086-156128580:+|nuORF;ENSG00000196189|ENST00000368285|SEMA4A	ENST00000487358.5_1_1:156126263-156128465:+|nuORF	ENST00000487358.5_1_1:156126263-156128465:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.2366027832031	3	414.221748	1239.64341	0.42432	0.00017576	1.6592	0.00068729	2.0836	0.00086306	414.222710409505	38.843	0.50328	38.942	38.652	39.155	0.099403					41	17	4	0	0	0	0.36698	1	8115	8115		9.544	2.0669	1	470890			49064	7835	28164	28165	59940	59940					0.033177364166022016
TQCFNFIRVL	10	Unmodified	_TQCFNFIRVL_					0	0	0		ENST00000487358.5_1_1:156126263-156128465:+|nuORF;ENST00000470306.5_1_1:156126086-156128580:+|nuORF;ENSG00000196189|ENST00000368285|SEMA4A	ENST00000487358.5_1_1:156126263-156128465:+|nuORF	ENST00000487358.5_1_1:156126263-156128465:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	414.221748	1239.64341	-0.41764	-0.000173	2.8665	0.0011874	2.4488	0.0010144	414.2229672116763	38.91	0.51068	38.91	38.679	39.189	0	-0.032968	0.00032038	NaN	9.544	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353400			49065	7835	28164	28165							0.033177364166022016
TQCFNFIRVL	10	Unmodified	_TQCFNFIRVL_					0	0	0		ENST00000487358.5_1_1:156126263-156128465:+|nuORF;ENST00000470306.5_1_1:156126086-156128580:+|nuORF;ENSG00000196189|ENST00000368285|SEMA4A	ENST00000487358.5_1_1:156126263-156128465:+|nuORF	ENST00000487358.5_1_1:156126263-156128465:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	414.221748	1239.64341	0.236	9.7756E-05	2.6095	0.0010809	2.8455	0.0011787	414.2228374811561	38.883	0.46618	38.976	38.704	39.17	0.09267	0.033278	1.0267E-06	NaN	9.544	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475450			49066	7835	28164	28165							0.033177364166022016
TQEELTPFF	9	Unmodified	_TQEELTPFF_					0	0	0		CON__P81644	CON__P81644	CON__P81644	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.77294921875	2	556.268947	1110.52334	0.0032096	1.7854E-06	-0.34911	-0.0001942	-0.3459	-0.00019241	556.2693466412331	14.422	0.28242	14.422	14.279	14.561	0					21	9	3	0	0	0	0.26188	1	706	706		1.6526	0	1	23511		+	49067	220	28165	28166	59941	59941					-0.02749973376126036
TQEENLVSP	9	Unmodified	_TQEENLVSP_					0	0	0			REV__ENST00000582356.5_1_17:7123904-7124179:+|nuORF	REV__ENST00000582356.5_1_17:7123904-7124179:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8163146972656	2	508.748379	1015.4822	0.25828	0.0001314	1.6537	0.0008413	1.9119	0.0009727	508.74940292674427	40.2	0.58429	40.2	39.723	40.307	0					30	20	2	0	0	0	0.23784	1	8505	8505		19.257	0	1	230820	+		49068	13763	28166	28167	59942	59942					-0.0249173441561652
TQEENLVSP	9	Unmodified	_TQEENLVSP_					0	0	0			REV__ENST00000582356.5_1_17:7123904-7124179:+|nuORF	REV__ENST00000582356.5_1_17:7123904-7124179:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8162536621094	2	508.748379	1015.4822	0.31457	0.00016004	2.1151	0.0010761	2.4297	0.0012361	508.7493321833963	39.864	0.57872	39.964	39.622	40.201	0.099407					31	20	2	0	0	0	0.23784	1	8406	8406		19.257	0	1	250260	+		49069	13763	28166	28167	59943	59943					-0.0249173441561652
TQEKNPLPSK	10	Unmodified	_TQEKNPLPSK_					0	0	0		ENST00000402089.4_1_4:91760056-91760137:-|nuORF;ENSG00000205542|ENST00000451311|TMSB4X	ENST00000402089.4_1_4:91760056-91760137:-|nuORF	ENST00000402089.4_1_4:91760056-91760137:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.3142700195312	2	571.31422	1140.61389	0.18888	0.00010791	-0.14665	-8.3781E-05	0.042238	2.4131E-05	571.3141983403465	17.615	1.8043	17.615	16.81	18.614	0					203	62	5	0	0	0	1.198E-28	8	1665	1526;1568;1615;1665;1711;1756;1807;1859		232.21	156.64	1	2597100			49070	8294	28167	28168	59944;59945;59946;59947;59948;59949;59950;59951	59947					0.0492049567212689
TQEKNPLPSK	10	Unmodified	_TQEKNPLPSK_					0	0	0		ENST00000402089.4_1_4:91760056-91760137:-|nuORF;ENSG00000205542|ENST00000451311|TMSB4X	ENST00000402089.4_1_4:91760056-91760137:-|nuORF	ENST00000402089.4_1_4:91760056-91760137:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.3143920898438	2	571.31422	1140.61389	0.1665	9.5123E-05	-0.050469	-2.8834E-05	0.11603	6.629E-05	571.3142445667814	17.812	1.5859	17.695	16.884	18.47	-0.11739					191	55	5	0	0	0	1.4494E-20	8	1769	1578;1629;1673;1722;1769;1811;1857;1911		216.43	153.2	1	2816200			49071	8294	28167	28168	59952;59953;59954;59955;59956;59957;59958;59959	59956					0.0492049567212689
TQEKNPLPSK	10	Unmodified	_TQEKNPLPSK_					0	0	0		ENST00000402089.4_1_4:91760056-91760137:-|nuORF;ENSG00000205542|ENST00000451311|TMSB4X	ENST00000402089.4_1_4:91760056-91760137:-|nuORF	ENST00000402089.4_1_4:91760056-91760137:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3142700195312	2	571.31422	1140.61389	0.14803	8.457E-05	-0.044621	-2.5493E-05	0.10341	5.9077E-05	571.3142365777004	17.723	1.8986	17.663	16.836	18.735	-0.060429					213	67	5	0	0	0	1.198E-28	9	1680	1549;1594;1636;1680;1724;1766;1814;1858;1912		232.21	158.01	1	2506300			49072	8294	28167	28168	59960;59961;59962;59963;59964;59965;59966;59967;59968	59963					0.0492049567212689
TQEKNTLPTK	10	Unmodified	_TQEKNTLPTK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752;ENST00000415070.1_1_2:236791008-236791086:-|nuORF	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3197631835938	2	580.319502	1158.62445	-0.022576	-1.3101E-05	0.5593	0.00032457	0.53672	0.00031147	580.3198542025115	14.802	0.58191	14.737	14.402	14.984	-0.064414					37	20	3	0	0	0	0.30656	1	833	833		19.626	8.1312	1	77669		+	49073	567	28168	28169	59969	59969					0.051484783265550504
TQEKNTLPTK	10	Unmodified	_TQEKNTLPTK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752;ENST00000415070.1_1_2:236791008-236791086:-|nuORF	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	580.319502	1158.62445	-0.029067	-1.6868E-05	0.4511	0.00026178	0.42204	0.00024492	580.3195988541363	14.641	0.47825	14.641	14.395	14.873	0	-0.05065	7.8753E-06	NaN	19.626	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68448		+	49074	567	28168	28169							0.051484783265550504
TQEKNTLPTK	10	Unmodified	_TQEKNTLPTK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752;ENST00000415070.1_1_2:236791008-236791086:-|nuORF	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	580.319502	1158.62445	0.042665	2.4759E-05	0.29724	0.0001725	0.33991	0.00019725	580.3197127113849	14.807	0.48808	14.697	14.417	14.905	-0.10981	0.0053043	-0.0001707	NaN	19.626	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83207		+	49075	567	28168	28169							0.051484783265550504
TQEYKEKL	8	Unmodified	_TQEYKEKL_					0	0	0		ENSG00000204599|ENST00000396551|TRIM39;nc|ENSG00000204599|Q9HCM9|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7919921875	2	519.776939	1037.53933	0.10379	5.3946E-05	0.51898	0.00026975	0.62276	0.0003237	519.7771850153589	31.129	0.68916	31.158	30.897	31.586	0.028296					69	24	4	0	0	0	0.41758	1	5735	5735		16.942	2.104	1	2671900			49076	8243	28169	28170	59970	59970					0.022057328607616
TQFKKDKEEN	10	Unmodified	_TQFKKDKEEN_					0	0	0			REV__ENST00000322734.2_1_3:44635666-44635717:+|nuORF	REV__ENST00000322734.2_1_3:44635666-44635717:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3172607421875	2	633.819867	1265.62518	0.21758	0.00013791	1.5428	0.00097784	1.7604	0.0011157	633.8217815287009	61.829	0.90126	61.82	61.451	62.353	-0.0085564					81	32	4	0	0	0	0.35231	1	15138	15138		12.241	0.74595	1	1069100	+		49077	19979	28170	28171	59971	59971					0.00299272975621534
TQFNYHRKK	9	Unmodified	_TQFNYHRKK_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A;SMC1A|p.K734Nfs*8|1|0.31|ENSG00000072501|chrX:53403888-53403888|T/-|frameshift_variant	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.8874206542969	3	407.887756	1220.64144	-0.39998	-0.00016315	0.034309	1.3994E-05	-0.36567	-0.00014915	407.8875947657028	13.512	0.56639	13.512	13.336	13.902	0					38	19	3	0	0	0	0.2953	1	456	456		9.544	0	1	186290			49078	983	28171	28172	59972	59972					0.03994443723013319
TQFNYHRKK	9	Unmodified	_TQFNYHRKK_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A;SMC1A|p.K734Nfs*8|1|0.31|ENSG00000072501|chrX:53403888-53403888|T/-|frameshift_variant	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.8874206542969	3	407.887756	1220.64144	-0.35578	-0.00014512	-0.2128	-8.68E-05	-0.56858	-0.00023192	407.8875718605178	13.588	0.57274	13.489	13.306	13.878	-0.099291					59	20	5	0	0	0	0.27303	1	481	481		12.873	5.3955	1	192470			49079	983	28171	28172	59973	59973					0.03994443723013319
TQFNYHRKK	9	Unmodified	_TQFNYHRKK_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A;SMC1A|p.K734Nfs*8|1|0.31|ENSG00000072501|chrX:53403888-53403888|T/-|frameshift_variant	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.8873596191406	3	407.887756	1220.64144	-0.35959	-0.00014667	0.10186	4.1549E-05	-0.25772	-0.00010512	407.88761064259	13.62	0.67336	13.553	13.302	13.976	-0.067496					47	23	3	0	0	0	0.31772	1	477	477		6.1918	0	1	188540			49080	983	28171	28172	59974	59974					0.03994443723013319
TQFNYHRKK	9	Unmodified	_TQFNYHRKK_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A;SMC1A|p.K734Nfs*8|1|0.31|ENSG00000072501|chrX:53403888-53403888|T/-|frameshift_variant	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	407.887756	1220.64144	-0.39998	-0.00016315	0.034309	1.3994E-05	-0.36567	-0.00014915	407.8875947657028	13.512	0.56639	13.512	13.336	13.902	0	-0.0060597	6.471E-05	NaN	12.873	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186290			49081	983	28171	28172							0.03994443723013319
TQFTIRARELQ	11	Unmodified	_TQFTIRARELQ_					0	0	0		nc|ENSG00000164675|Q8NA54-2|IQUB;ENSG00000164675|ENST00000324698|IQUB	nc|ENSG00000164675|Q8NA54-2|IQUB	nc|ENSG00000164675|Q8NA54-2|IQUB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.9487609863281	3	454.921126	1361.74155	0.20082	9.1356E-05	-2.3289	-0.0010595	-2.1281	-0.00096813	454.92005434553465	37.386	0.24893	37.479	37.275	37.524	0.093018					9	8	2	0	0	0	0.33326	1	7642	7642		1.4551	0.94916	1	73706			49082	5864	28172	28173	59975	59975					0.07514636266182606
TQFWDPLE	8	Unmodified	_TQFWDPLE_					0	0	0			REV__nc|ENSG00000119139|Q9UDY2-5|TJP2	REV__nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3174438476562	2	518.242732	1034.47091	0.5522	0.00028617	3.7196	0.0019276	4.2718	0.0022138	518.2464616038842	78.629	0.20609	78.687	78.58	78.787	0.058151					15	7	3	0	0	0	0.34247	1	20367	20367		8.5933	0	1	67980	+		49083	15030	28173	28174	59976	59976					-0.044945117190763995
TQGGARTPTIQ	11	Unmodified	_TQGGARTPTIQ_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7612915039062	2	565.301644	1128.58874	0.37399	0.00021142	-1.3054	-0.00073796	-0.93143	-0.00052654	565.3017854493252	68.732	0.22958	68.732	68.643	68.872	0					13	7	2	0	0	0	0.32231	1	17334	17334		19.362	1.2156	1	82097	+		49084	18293	28174	28175	59977	59977					0.02958440869565493
TQHALWTL	8	Unmodified	_TQHALWTL_					0	0	0			REV__ENST00000307114.11_1_6:43589029-43589137:-|nuORF	REV__ENST00000307114.11_1_6:43589029-43589137:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80035400390625	2	485.261259	968.507966	0.61275	0.00029734	-0.61716	-0.00029948	-0.0044126	-2.1413E-06	485.26101800214855	54.852	0.57148	54.852	54.626	55.198	0					33	20	2	0	0	0	0.31617	1	13093	13093		20.454	1.0917	1	491520	+		49085	19865	28175	28176	59978	59978					0.022452046173157214
TQHALWTL	8	Unmodified	_TQHALWTL_					0	0	0			REV__ENST00000307114.11_1_6:43589029-43589137:-|nuORF	REV__ENST00000307114.11_1_6:43589029-43589137:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7895812988281	2	485.261259	968.507966	0.54532	0.00026462	-0.37791	-0.00018338	0.16742	8.1241E-05	485.2609073430766	54.813	0.82741	54.876	54.41	55.237	0.063202					39	30	3	0	0	0	0.31617	1	13067	13067		20.454	1.0917	1	510460	+		49086	19865	28175	28176	59979	59979					0.022452046173157214
TQIATKWKLIW	11	Unmodified	_TQIATKWKLIW_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN;REV__UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant	REV__ENSG00000152818|ENST00000367545|UTRN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2835693359375	3	463.274729	1386.80236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.552	1	91.642	91.142	92.142	0.090668								0	0	0	0.36872	1	24306	24306		4.1166	1.4854	1		+		49087	16599;23352	28176	28177	59980	59980					0.12442773316411149
TQIDSPLNGK	10	Unmodified	_TQIDSPLNGK_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.7857055664062	2	536.785296	1071.55604	0.7511	0.00040318	0.025894	1.3899E-05	0.77699	0.00041708	536.7853864994768	32.368	0.68204	32.368	32.038	32.72	0					45	24	2	0	0	0	0.16364	1	6133	6133		55.249	25.408	1	646970			49088	5601	28177	28178	59981	59981					0.02312233746692982
TQIDSPLNGK	10	Unmodified	_TQIDSPLNGK_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.7854614257812	2	536.785296	1071.55604	0.69035	0.00037057	0.11263	6.0459E-05	0.80298	0.00043103	536.7854002760425	32.246	0.66934	32.302	32.035	32.704	0.055313					42	23	2	0	0	0	0.020733	1	6103	6103		70.929	34.422	1	621880			49089	5601	28177	28178	59982	59982					0.02312233746692982
TQIDSPLNGK	10	Unmodified	_TQIDSPLNGK_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-2|VCAM1;chr1:100724890-100732418|492|13.31|0.53|4.66|+|ENST00000370115|VCAM1,VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7855224609375	2	536.785296	1071.55604	0.51725	0.00027765	0.15211	8.165E-05	0.66936	0.0003593	536.7854350692464	32.304	0.66517	32.359	32.045	32.71	0.054371					44	23	2	0	0	0	0.032393	1	6102	6102		62.869	15.274	1	694350			49090	5601	28177	28178	59983	59983					0.02312233746692982
TQIDSPLSGK	10	Unmodified	_TQIDSPLSGK_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-3|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.279541015625	2	523.279846	1044.54514	0.6265	0.00032783	-0.62087	-0.00032489	0.0056237	2.9427E-06	523.2794742594718	33.58	1.1876	33.58	33.119	34.306	0					123	42	4	0	0	0	0.0014295	1	6483	6483		115.06	54.985	1	3507100			49091	5601	28178	28179	59984	59984					0.02464831372435583
TQIDSPLSGK	10	Unmodified	_TQIDSPLSGK_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-3|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2802734375	2	523.279846	1044.54514	0.69257	0.00036241	-0.46909	-0.00024547	0.22348	0.00011694	523.279569265123	33.445	1.5739	33.511	33.074	34.648	0.06636					143	56	4	0	0	0	0.00014312	1	6536	6536		135.72	66.614	1	3618800			49092	5601	28178	28179	59985	59985					0.02464831372435583
TQIDSPLSGK	10	Unmodified	_TQIDSPLSGK_					0	0	0		ENSG00000162692|ENST00000294728|VCAM1;nc|ENSG00000162692|P19320-3|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	ENSG00000162692|ENST00000294728|VCAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.280029296875	2	523.279846	1044.54514	0.29483	0.00015428	-0.19456	-0.00010181	0.10027	5.2469E-05	523.2797660528498	33.448	1.0183	33.515	33.081	34.099	0.0667					127	36	5	0	0	0	0.017207	1	6425	6425		74.772	34.822	1	3716600			49093	5601	28178	28179	59986	59986					0.02464831372435583
TQIGGLLDTK	10	Unmodified	_TQIGGLLDTK_					0	0	0		nc|ENSG00000105737|Q16478-2|GRIK5;ENSG00000105737|ENST00000593562|GRIK5;ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000149403|ENST00000527524|GRIK4	nc|ENSG00000105737|Q16478-2|GRIK5;ENST00000533291.5_1_11:120531027-120833419:+|nuORF	ENST00000533291.5_1_11:120531027-120833419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.279541015625	2	523.298039	1044.58152	0.66242	0.00034664	-2.8815	-0.0015079	-2.2191	-0.0011612	523.2968993638898	33.643	0.47178	33.643	33.393	33.865	0					29	16	3	0	0	0	0.13784	1	6530	6530		40.239	6.1368	1	255420			49094	4863;2019	28179	28180	59987	59987					0.061017082691250835
TQIGGLLDTK	10	Unmodified	_TQIGGLLDTK_					0	0	0		nc|ENSG00000105737|Q16478-2|GRIK5;ENSG00000105737|ENST00000593562|GRIK5;ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000149403|ENST00000527524|GRIK4	nc|ENSG00000105737|Q16478-2|GRIK5;ENST00000533291.5_1_11:120531027-120833419:+|nuORF	ENST00000533291.5_1_11:120531027-120833419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2799072265625	2	523.298039	1044.58152	0.77291	0.00040446	-2.175	-0.0011382	-1.4021	-0.00073371	523.29706602863	33.552	0.57944	33.618	33.295	33.875	0.06636					35	20	3	0	0	0	0.10215	1	6493	6493		47.594	12.662	1	286870			49095	4863;2019	28179	28180	59988	59988					0.061017082691250835
TQIGGLLDTK	10	Unmodified	_TQIGGLLDTK_					0	0	0		nc|ENSG00000105737|Q16478-2|GRIK5;ENSG00000105737|ENST00000593562|GRIK5;ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000149403|ENST00000527524|GRIK4	nc|ENSG00000105737|Q16478-2|GRIK5;ENST00000533291.5_1_11:120531027-120833419:+|nuORF	ENST00000533291.5_1_11:120531027-120833419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2794799804688	2	523.298039	1044.58152	0.28353	0.00014837	-3.0759	-0.0016096	-2.7923	-0.0014612	523.2964815577035	33.486	0.52679	33.553	33.297	33.824	0.066704					29	18	2	0	0	0	0.13784	1	6476	6476		40.239	0	1	281700			49096	4863;2019	28179	28180	59989	59989					0.061017082691250835
TQILAMVNQ	9	Unmodified	_TQILAMVNQ_					0	0	0		nc|ENSG00000151208|Q8TDM6-4|DLG5;ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-2|DLG5	nc|ENSG00000151208|Q8TDM6-4|DLG5	nc|ENSG00000151208|Q8TDM6-4|DLG5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.27288818359375	2	509.273509	1016.53247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.38	1	113.38	112.88	113.88	0								0	0	0	0.264	1	29450	29450		1.8442	0.19162	1				49097	4944	28180	28181	59990	59990					0.024860967085487573
TQIQNKPEK	9	Unmodified	_TQIQNKPEK_					0	0	0		nc|ENSG00000073711|Q06190-2|PPP2R3A	nc|ENSG00000073711|Q06190-2|PPP2R3A	nc|ENSG00000073711|Q06190-2|PPP2R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3014526367188	2	543.301113	1084.58767	0.54259	0.00029479	-0.16349	-8.8822E-05	0.3791	0.00020597	543.3010161474567	16.519	0.46827	16.457	16.205	16.674	-0.062534					35	15	4	0	0	0	0.33911	1	1329	1329		2.9952	0	1	95293			49098	12585	28181	28182	59991	59991					0.04876226500641678
TQKELWLQ	8	Unmodified	_TQKELWLQ_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7755126953125	2	523.287474	1044.5604	0.41119	0.00021517	2.2528	0.0011789	2.664	0.001394	523.2887849419969	27.049	0.56309	27.049	26.644	27.207	0					25	19	2	0	0	0	0.34247	1	4484	4484		8.5933	0	1	62919	+		49099	15891	28182	28183	59992	59992					0.03989742960266085
TQKHMEINL	9	Unmodified	_TQKHMEINL_					0	0	0			REV__nc|ENSG00000140332|Q04726-2|TLE3	REV__nc|ENSG00000140332|Q04726-2|TLE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2894897460938	2	557.289691	1112.56483	0.33753	0.0001881	-0.68819	-0.00038352	-0.35067	-0.00019542	557.2893231571436	70.745	0.78036	70.721	70.407	71.188	-0.024864					96	27	5	0	0	0	0.24467	1	17956	17956		17.113	17.113	1	2917700	+		49100	16029	28183	28184	59993	59993					0.013048841115278265
TQKHMEINL	9	Unmodified	_TQKHMEINL_					0	0	0			REV__nc|ENSG00000140332|Q04726-2|TLE3	REV__nc|ENSG00000140332|Q04726-2|TLE3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	557.289691	1112.56483	0.32613	0.00018175	-0.44248	-0.00024659	-0.11635	-6.4839E-05	557.2894054625406	70.661	0.80513	70.661	70.378	71.183	0	-0.044469	0.00024347	NaN	17.113	88	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2493000	+		49101	16029	28183	28184							0.013048841115278265
TQKKKAERQF	10	Unmodified	_TQKKKAERQF_					0	0	0		ENSG00000261739|ENST00000562295|GOLGA8S;ENSG00000153684|ENST00000526619|GOLGA8F;ENSG00000183629|ENST00000525590|GOLGA8G	ENSG00000261739|ENST00000562295|GOLGA8S	ENSG00000261739|ENST00000562295|GOLGA8S	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.3619384765625	2	632.362036	1262.70952	0.58	0.00036677	-0.93103	-0.00058875	-0.35102	-0.00022197	632.3612483903657	91.054	0.62966	91.054	90.823	91.452	0.00046539					116	42	3	0	0	0	0.411	1	24214	24214		2.9952	1.8019	1	5275100			49102	8663	28184	28185	59994	59994					0.08867268583003352
TQKRRIRLS	9	Unmodified	_TQKRRIRLS_					0	0	0			REV__ENST00000550144.1_1_12:58221318-58223298:-|nuORF	REV__ENST00000550144.1_1_12:58221318-58223298:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.8250732421875	2	579.364913	1156.71527	-0.099273	-5.7516E-05	0.0070497	4.0844E-06	-0.092224	-5.3431E-05	579.364866938789	13.628	0.24277	13.561	13.388	13.63	-0.067496					14	8	2	0	0	0	0.26262	1	473	473		0.45834	0	1	52228	+		49103	22183	28185	28186	59995	59995					0.14318411885369642
TQKRRIRLS	9	Unmodified	_TQKRRIRLS_					0	0	0			REV__ENST00000550144.1_1_12:58221318-58223298:-|nuORF	REV__ENST00000550144.1_1_12:58221318-58223298:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	579.364913	1156.71527	-0.069439	-4.0231E-05	-0.0359	-2.0799E-05	-0.10534	-6.103E-05	579.364952540435	13.497	0.20123	13.497	13.396	13.597	0	-0.012004	-5.4815E-05	NaN	0.45834	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75367	+		49104	22183	28185	28186							0.14318411885369642
TQKRRIRLS	9	Unmodified	_TQKRRIRLS_					0	0	0			REV__ENST00000550144.1_1_12:58221318-58223298:-|nuORF	REV__ENST00000550144.1_1_12:58221318-58223298:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	579.364913	1156.71527	-0.051777	-2.9998E-05	0.059139	3.4263E-05	0.0073622	4.2654E-06	579.3650068250129	13.569	0.27103	13.47	13.337	13.608	-0.099291	-0.039208	5.531E-05	NaN	0.45834	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52723	+		49105	22183	28185	28186							0.14318411885369642
TQLAEWQP	8	Unmodified	_TQLAEWQP_					0	0	0			REV__ENSG00000179813|ENST00000313851|FAM216B	REV__ENSG00000179813|ENST00000313851|FAM216B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.28533935546875	2	486.742899	971.471246	-0.61238	-0.00029807	0.8984	0.00043729	0.28602	0.00013922	486.7434090203133	34.426	0.46552	34.502	34.273	34.739	0.075306					36	16	3	0	0	0	0.32886	1	6775	6775		21.747	1.293	1	238310	+		49106	18092	28186	28187	59996	59996					-0.015630919992418058
TQLAEWQP	8	Unmodified	_TQLAEWQP_					0	0	0			REV__ENSG00000179813|ENST00000313851|FAM216B	REV__ENSG00000179813|ENST00000313851|FAM216B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2856750488281	2	486.742899	971.471246	-0.086487	-4.2097E-05	0.36251	0.00017645	0.27602	0.00013435	486.74305697207427	34.281	0.56488	34.347	34.153	34.718	0.066704					30	19	2	0	0	0	0.32886	1	6718	6718		21.747	3.6117	1	151750	+		49107	18092	28186	28187	59997	59997					-0.015630919992418058
TQLDRIWI	8	Unmodified	_TQLDRIWI_					0	0	0			REV__ENST00000589200.2_3_19:1997432-2013830:-|nuORF	REV__ENST00000589200.2_3_19:1997432-2013830:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2797241210938	2	522.795466	1043.57638	0.32432	0.00016955	0.14504	7.5826E-05	0.46936	0.00024538	522.7955131128809	33.163	0.5316	33.163	32.895	33.426	0					40	18	3	0	0	0	0.37937	1	6471	6471		21.747	2.4897	1	433330	+		49108	22549	28187	28188	59998	59998					0.056334491971938405
TQLLKNDLT	9	Unmodified	_TQLLKNDLT_					0	0	0			REV__nc|ENSG00000124207|P55060-4|CSE1L	REV__nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2800903320312	2	523.298039	1044.58152	0.28353	0.00014837	-3.0759	-0.0016096	-2.7923	-0.0014612	523.2964815577035	33.486	0.52679	33.553	33.297	33.824	0.066704					29	18	2	0	0	0	0.12846	1	6526	6526		34.102	4.2619	1	281700	+		49109	15221	28188	28189	59999	59999					0.061017082691250835
TQLQERKRRR	10	Unmodified	_TQLQERKRRR_					0	0	0		ENSG00000127993|ENST00000265732|RBM48;nc|ENSG00000127993|Q5RL73-2|RBM48	ENSG00000127993|ENST00000265732|RBM48	ENSG00000127993|ENST00000265732|RBM48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.6080627441406	3	457.607764	1369.80146	-0.010626	-4.8623E-06	-0.1573	-7.1982E-05	-0.16793	-7.6845E-05	457.60807634851585	93.308	1.1255	93.308	92.614	93.739	0					199	97	3	0	0	0	0.4155	1	24918	24918		0.62683	0.12087	1	310530			49110	3344	28189	28190	60000	60000					0.1313537172004544
TQNLVMSS	8	Unmodified	_TQNLVMSS_					0	0	0		nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236;ENST00000543926.6_1_18:74647944-74680292:+|nuORF	nc|ENSG00000130856|Q9UL36|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.6083984375	2	440.21566	878.416767	0.16153	7.1107E-05	1.6328	0.00071877	1.7943	0.00078987	440.2167556150666	88.332	0.25124	88.421	88.269	88.52	0.089195					22	10	3	0	0	0	0.34272	1	23332	23332		7.9102	0	1	83519			49111	3526	28190	28191	60001	60001					-0.027304271423076898
TQPDLLASL	9	Unmodified	_TQPDLLASL_					0	0	0		ENST00000560197.5_1_15:39160624-39178953:-|nuORF	ENST00000560197.5_1_15:39160624-39178953:-|nuORF	ENST00000560197.5_1_15:39160624-39178953:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.27734375	2	479.266207	956.517862	0.55392	0.00026547	0.469	0.00022477	1.0229	0.00049025	479.2676563761806	77.502	0.6155	77.557	77.15	77.766	0.05542					41	21	3	0	0	0	0.29176	1	19962	19962		10.074	0	1	136090			49112	11893	28191	28192	60002	60002					0.03786347832055981
TQPERIRYIL	10	Unmodified	_TQPERIRYIL_					0	0	0			REV__ENSG00000111404|ENST00000538724|RERGL	REV__ENSG00000111404|ENST00000538724|RERGL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.2646789550781	3	430.250583	1287.72992	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.036	1	80.036	79.536	80.536	0								0	0	0	0.37581	1	20783	20783		1.9064	0.69154	1		+		49113	14721	28192	28193	60003	60003					0.09756439242846682
TQPGGKFAFF	10	Unmodified	_TQPGGKFAFF_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2825927734375	2	550.282192	1098.54983	0.49269	0.00027112	0.41929	0.00023073	0.91198	0.00050185	550.282367574202	58.279	0.87297	58.364	57.97	58.843	0.085617					54	28	2	0	0	0	0.2005	1	14114	14114		43.982	11.676	1	1803000			49114	1820	28193	28194	60004	60004					0.004497603058325694
TQPGGKFAFF	10	Unmodified	_TQPGGKFAFF_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2823486328125	2	550.282192	1098.54983	0.7453	0.00041012	-0.16651	-9.163E-05	0.57879	0.0003185	550.2820526939073	58.504	1.0235	58.49	58.09	59.113	-0.014267					67	36	2	0	0	0	0.20925	1	14220	14220		35.612	10.213	1	2412900			49115	1820	28193	28194	60005	60005					0.004497603058325694
TQQAKAKPQ	9	Unmodified	_TQQAKAKPQ_					0	0	0			REV__nc|ENSG00000161649|Q6UXG3-4|CD300LG	REV__nc|ENSG00000161649|Q6UXG3-4|CD300LG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.295654296875	2	500.282723	998.550893	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.177	1	16.063	15.563	16.563	-0.11434								0	0	0	0.22377	1	1251	1251		14.838	0.93222	1		+		49116	16946	28194	28195	60006	60006					0.05155974674744357
TQQRHQSVLNL	11	Unmodified	_TQQRHQSVLNL_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.9091491699219	3	441.909109	1322.7055	0.42024	0.00018571	-0.64805	-0.00028638	-0.22781	-0.00010067	441.9088705550325	32.407	0.78939	32.462	32.157	32.946	0.055309					60	28	4	0	0	0	0.32912	1	6169	6169		11.631	5.397	1	608470	+		49117	14066	28195	28196	60007	60007					0.057051790893410725
TQQRHQSVLNL	11	Unmodified	_TQQRHQSVLNL_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.9090881347656	3	441.909109	1322.7055	0.22865	0.00010104	-0.21433	-9.4716E-05	0.014318	6.3275E-06	441.90898600628634	32.38	0.70981	32.435	32.167	32.877	0.054375					62	25	4	0	0	0	0.39698	1	6167	6167		11.631	11.631	1	761720	+		49118	14066	28195	28196	60008	60008					0.057051790893410725
TQQRHQSVLNL	11	Unmodified	_TQQRHQSVLNL_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	441.909109	1322.7055	0.45139	0.00019947	-0.61633	-0.00027236	-0.16494	-7.2888E-05	441.9088782295781	32.47	0.53221	32.47	32.279	32.811	0	0.014297	-0.00018326	NaN	11.631	57	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	573980	+		49119	14066	28195	28196							0.057051790893410725
TQQRHQSVLNL	11	Unmodified	_TQQRHQSVLNL_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	441.909109	1322.7055	0.22865	0.00010104	-0.21433	-9.4716E-05	0.014318	6.3275E-06	441.90898600628634	32.38	0.70981	32.435	32.167	32.877	0.054375	-0.020741	0.00034968	NaN	11.631	62	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	761720	+		49120	14066	28195	28196							0.057051790893410725
TQRGALFLLF	10	Unmodified	_TQRGALFLLF_					0	0	0		ENST00000481988.1_1_X:99901319-99905990:+|nuORF;ENSG00000102359|ENST00000373004|SRPX2	ENST00000481988.1_1_X:99901319-99905990:+|nuORF	ENST00000481988.1_1_X:99901319-99905990:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3401489257812	2	583.340041	1164.66553	0.41722	0.00024338	-0.071783	-4.1874E-05	0.34544	0.00020151	583.3399293857971	79.177	0.54423	79.238	78.971	79.516	0.061417					58	25	3	0	0	0	0.15113	1	20483	20483		38.615	4.5123	1	270050			49121	1764	28196	28197	60009	60009					0.0897828415670574
TQRGALFLLF	10	Unmodified	_TQRGALFLLF_					0	0	0		ENST00000481988.1_1_X:99901319-99905990:+|nuORF;ENSG00000102359|ENST00000373004|SRPX2	ENST00000481988.1_1_X:99901319-99905990:+|nuORF	ENST00000481988.1_1_X:99901319-99905990:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	583.340041	1164.66553	0.54332	0.00031694	-0.30722	-0.00017922	0.2361	0.00013772	583.3397285912431	79.25	0.56029	79.221	78.983	79.544	-0.028931	0.0029827	-0.00013364	NaN	38.615	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323770			49122	1764	28196	28197							0.0897828415670574
TQRKPPDR	8	Unmodified	_TQRKPPDR_					0	0	0		nc|ENSG00000144354|Q9BWT1-4|CDCA7	nc|ENSG00000144354|Q9BWT1-4|CDCA7	nc|ENSG00000144354|Q9BWT1-4|CDCA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2511901855469	2	499.280515	996.546476	0.25565	0.00012764	-0.46595	-0.00023264	-0.2103	-0.000105	499.2803225569347	27.282	0.40043	27.282	27.007	27.408	0					32	13	3	0	0	0	0.34272	1	4643	4643		7.9102	0.62092	1	155880			49123	12736	28197	28198	60010	60010					0.048065102518421554
TQRKPPDR	8	Unmodified	_TQRKPPDR_					0	0	0		nc|ENSG00000144354|Q9BWT1-4|CDCA7	nc|ENSG00000144354|Q9BWT1-4|CDCA7	nc|ENSG00000144354|Q9BWT1-4|CDCA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2511901855469	2	499.280515	996.546476	0.20095	0.00010033	0.49783	0.00024856	0.69878	0.00034889	499.28085903502944	27.235	0.39633	27.213	27.015	27.411	-0.021412					32	13	3	0	0	0	0.34272	1	4656	4656		7.9102	4.3137	1	211040			49124	12736	28197	28198	60011	60011					0.048065102518421554
TQRKPPDR	8	Unmodified	_TQRKPPDR_					0	0	0		nc|ENSG00000144354|Q9BWT1-4|CDCA7	nc|ENSG00000144354|Q9BWT1-4|CDCA7	nc|ENSG00000144354|Q9BWT1-4|CDCA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2511901855469	2	499.280515	996.546476	0.21987	0.00010978	-0.0018728	-9.3506E-07	0.218	0.00010884	499.28041318915496	27.285	0.36505	27.274	27.042	27.407	-0.01156					22	12	2	0	0	0	0.34039	1	4645	4645		15.847	2.3393	1	182460			49125	12736	28197	28198	60012	60012					0.048065102518421554
TQRPRKKRPS	10	Unmodified	_TQRPRKKRPS_					0	0	0			REV__nc|ENSG00000107447|P04053-2|DNTT	REV__nc|ENSG00000107447|P04053-2|DNTT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.8842163085938	2	627.381094	1252.74764	0.16814	0.00010549	1.0046	0.00063025	1.1727	0.00073573	627.3814718290594	103.16	0.78476	103.16	102.83	103.62	-0.0011063					293	111	4	0	0	0	0.38773	1	27432	27432		5.7319	0	1	32106000	+		49126	14553	28198	28199	60013	60013					0.13137199288371448
TQRPRKKRPS	10	Unmodified	_TQRPRKKRPS_					0	0	0			REV__nc|ENSG00000107447|P04053-2|DNTT	REV__nc|ENSG00000107447|P04053-2|DNTT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.3822021484375	2	627.381094	1252.74764	0.16944	0.00010631	0.77217	0.00048445	0.94162	0.00059075	627.3813308128422	103.75	1.1892	103.75	103.52	104.71	-0.0011139					513	166	4	0	0	0	0.38773	3	27616	27616;27649;27691		5.7319	0	1	31067000	+		49127	14553	28198	28199	60014;60015;60016	60014					0.13137199288371448
TQRQEKSP	8	Unmodified	_TQRQEKSP_					0	0	0			REV__nc|ENSG00000152670|Q9NQI0-3|DDX4	REV__nc|ENSG00000152670|Q9NQI0-3|DDX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7646179199219	2	487.256705	972.498858	0.17065	8.3151E-05	0.16811	8.1912E-05	0.33876	0.00016506	487.2566771574303	17.965	0.44528	17.965	17.771	18.216	0					27	14	2	0	0	0	0.34419	1	1771	1771		1.8442	0	1	89500	+		49128	16591	28199	28200	60017	60017					0.011508112609931231
TQRSYFLRI	9	Unmodified	_TQRSYFLRI_					0	0	0			REV__ENST00000330387.10_1_7:137564531-137564783:-|nuORF	REV__ENST00000330387.10_1_7:137564531-137564783:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.80126953125	2	592.332747	1182.65094	0.51284	0.00030377	-0.09993	-5.9192E-05	0.41291	0.00024458	592.332729584952	45.112	0.51691	45.112	44.935	45.452	0					29	18	2	0	0	0	0.24787	1	10050	10050		15.248	3.7538	1	388730	+		49129	20036	28200	28201	60018	60018					0.06692212008556453
TQRSYFLRI	9	Unmodified	_TQRSYFLRI_					0	0	0			REV__ENST00000330387.10_1_7:137564531-137564783:-|nuORF	REV__ENST00000330387.10_1_7:137564531-137564783:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.8012084960938	2	592.332747	1182.65094	0.49948	0.00029586	-0.28961	-0.00017154	0.20987	0.00012431	592.3328069081301	44.852	0.52218	44.92	44.682	45.204	0.068569					33	18	3	0	0	0	0.24787	1	9962	9962		15.248	2.206	1	482060	+		49130	20036	28200	28201	60019	60019					0.06692212008556453
TQSATFTSFPG	11	Unmodified	_TQSATFTSFPG_					0	0	0			REV__ADGRG4|p.L1919F|1|0.32|ENSG00000156920|chrX:136349463-136349463|G/C|missense_variant	REV__ADGRG4|p.L1919F|1|0.32|ENSG00000156920|chrX:136349463-136349463|G/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2693481445312	2	572.269478	1142.5244	0.37216	0.00021297	-0.9908	-0.00056701	-0.61864	-0.00035403	572.2688986923171	57.183	0.52882	57.183	56.937	57.466	0					44	19	3	0	0	0	0.27304	1	13781	13781		26.268	1.2772	1	605140	+		49131	13085	28201	28202	60020	60020					-0.041157590072543826
TQSATFTSFPG	11	Unmodified	_TQSATFTSFPG_					0	0	0			REV__ADGRG4|p.L1919F|1|0.32|ENSG00000156920|chrX:136349463-136349463|G/C|missense_variant	REV__ADGRG4|p.L1919F|1|0.32|ENSG00000156920|chrX:136349463-136349463|G/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2695922851562	2	572.269478	1142.5244	0.36454	0.00020862	-0.93917	-0.00053746	-0.57463	-0.00032884	572.268883707531	57.023	0.47909	57.101	56.857	57.336	0.078671					31	17	2	0	0	0	0.32017	1	13757	13757		20.415	1.0526	1	597570	+		49132	13085	28201	28202	60021	60021					-0.041157590072543826
TQSATFTSFPG	11	Unmodified	_TQSATFTSFPG_					0	0	0			REV__ADGRG4|p.L1919F|1|0.32|ENSG00000156920|chrX:136349463-136349463|G/C|missense_variant	REV__ADGRG4|p.L1919F|1|0.32|ENSG00000156920|chrX:136349463-136349463|G/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.3060302734375	2	572.269478	1142.5244	0.36454	0.00020862	-0.93917	-0.00053746	-0.57463	-0.00032884	572.268883707531	57.023	0.47909	57.101	56.857	57.336	0.078671					31	17	2	0	0	0	0.32477	1	13772	13772		16.149	0	1	597570	+		49133	13085	28201	28202	60022	60022					-0.041157590072543826
TQSEIIAYWL	10	Unmodified	_TQSEIIAYWL_					0	0	0			REV__ENSG00000167325|ENST00000300738|RRM1	REV__ENSG00000167325|ENST00000300738|RRM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.8873596191406	3	408.548406	1222.62339	-0.32961	-0.00013466	0.54983	0.00022463	0.22022	8.9971E-05	408.5486457855547	13.73	0.36659	13.664	13.494	13.861	-0.066067					15	12	2	0	0	0	0.32162	1	477	477		0.77653	0	1	17285	+		49134	17377	28202	28203	60023	60023					0.02098263957668678
TQSLRQQIFSV	11	Unmodified	_TQSLRQQIFSV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.5556640625	3	436.241976	1305.7041	-0.3338	-0.00014562	-0.30548	-0.00013326	-0.63928	-0.00027888	436.24170032892334	14.74	0.49911	14.674	14.455	14.954	-0.066068					19	17	2	0	0	0	0.3331	1	823	823		2.2527	0	1	23151	+		49135	16705;23038	28203	28204	60024	60024					0.06347545000539867
TQSLRQQIFSV	11	Unmodified	_TQSLRQQIFSV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	436.241976	1305.7041	-0.24881	-0.00010854	-0.50227	-0.00021911	-0.75108	-0.00032765	436.5760500432833	14.715	0.20155	14.61	14.54	14.742	-0.10466	-0.031922	-6.1433E-05	NaN	2.2527	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28362	+		49136	16705;23038	28203	28204							0.06347545000539867
TQSLVKKHK	9	Unmodified	_TQSLVKKHK_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;SPTBN1|p.E1055Gfs*20|1|0.19|ENSG00000115306|chr2:54631208-54631224|GAGAGGCCTCCCTGGGA/-|frameshift_variant	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.3197631835938	2	534.82984	1067.64513	0.44748	0.00023933	2.4227	0.0012957	2.8702	0.0015351	534.8316480197267	27.084	0.63741	27.072	26.681	27.318	-0.011562					53	22	3	0	0	0	0.24848	1	4611	4611		13.906	0.86358	1	340120			49137	2631	28204	28205	60025	60025					0.11401113496890503
TQSSALAKHLR	11	Unmodified	_TQSSALAKHLR_					0	0	0		ENSG00000196605|ENST00000397902|ZNF846	ENSG00000196605|ENST00000397902|ZNF846	ENSG00000196605|ENST00000397902|ZNF846	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.36962890625	2	606.346386	1210.67822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.642	1	94.64	94.14	95.14	-0.0020142								0	0	0	0.36517	1	25253	25253		4.897	0	1				49138	7885	28205	28206	60026	60026					0.0813069554892536
TQSTPFTGPF	10	Unmodified	_TQSTPFTGPF_					0	0	0		ENSG00000164142|ENST00000435205|FHIP1A	ENSG00000164142|ENST00000435205|FHIP1A	ENSG00000164142|ENST00000435205|FHIP1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3345947265625	2	541.761289	1081.50803	-0.81894	-0.00044367	0.49702	0.00026927	-0.32192	-0.00017441	541.7614957060208	34.996	0.4975	35.072	34.763	35.261	0.075306					29	17	2	0	0	0	0.32033	1	6883	6883		3.5965	0	1	165820			49139	5799	28206	28207	60027	60027					-0.029468401733083738
TQSWFSSKLF	10	Unmodified	_TQSWFSSKLF_					0	0	0			REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	REV__ENST00000541225.5_1_17:66883094-66937097:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.87652587890625	3	410.876634	1229.60807	0.18037	7.4109E-05	-0.53391	-0.00021937	-0.35354	-0.00014526	410.87643985651613	66.491	0.97397	66.575	66.274	67.248	0.083824					67	34	4	0	0	0	0.36698	1	16639	16639		9.544	1.0997	1	546820	+		49140	16070	28207	28208	60028	60028					0.002453971604609251
TQTKLEMLF	9	Unmodified	_TQTKLEMLF_					0	0	0		nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	nc|ENSG00000160695|Q9H270|VPS11	nc|ENSG00000160695|Q9H270|VPS11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8170166015625	2	555.796817	1109.57908	0.19954	0.00011091	-1.1657	-0.00064791	-0.96618	-0.000537	556.2970340494799	99.576	0.14238	99.569	99.49	99.632	-0.006897					25	16	2	0	0	0	0.30166	1	26673	26673		8.5933	1.304	1	55896			49141	5477	28208	28209	60029	60029					0.028675365398157737
TQTLVREYF	9	Unmodified	_TQTLVREYF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.8038330078125	2	578.803488	1155.59242	0.3386	0.00019598	0.7094	0.0004106	1.048	0.00060658	578.8037355836989	51.767	0.35655	51.813	51.595	51.951	0.046574					32	12	3	0	0	0	0.0016481	1	12116	12116		114.5	70.638	1	990200			49142	8613	28209	28210	60030	60030					0.020851106434292888
TQTRGLWA	8	Unmodified	_TQTRGLWA_					0	0	0			REV__SPTBN2|p.S1719Pfs*11|1|0.21|ENSG00000173898|chr11:66692572-66692572|G/-|frameshift_variant	REV__SPTBN2|p.S1719Pfs*11|1|0.21|ENSG00000173898|chr11:66692572-66692572|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2266540527344	2	466.751059	931.487565	-0.054661	-2.5513E-05	0.17465	8.1519E-05	0.11999	5.6006E-05	466.75096267131056	18.944	0.39645	18.886	18.681	19.077	-0.058174					19	13	2	0	0	0	0.34434	1	2134	2134		0.79363	0	1	30642	+		49143	17811	28210	28211	60031	60031					0.01908033957522548
TQTYGPAYYA	10	Unmodified	_TQTYGPAYYA_					0	0	0			REV__nc|ENSG00000156735|O95429-2|BAG4	REV__nc|ENSG00000156735|O95429-2|BAG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2794799804688	2	567.758746	1133.50294	0.41426	0.0002352	0.46049	0.00026145	0.87475	0.00049665	567.7592184432773	63.785	0.57355	63.785	63.532	64.105	0					54	20	4	0	0	0	0.29589	1	15818	15818		22.736	2.3217	1	736130	+		49144	16757	28211	28212	60032	60032					-0.0584714403594262
TQTYGPAYYA	10	Unmodified	_TQTYGPAYYA_					0	0	0			REV__nc|ENSG00000156735|O95429-2|BAG4	REV__nc|ENSG00000156735|O95429-2|BAG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2794799804688	2	567.758746	1133.50294	0.50972	0.0002894	0.54588	0.00030993	1.0556	0.00059933	567.7592671117205	63.672	0.72394	63.767	63.539	64.263	0.095722					62	25	4	0	0	0	0.30586	1	15808	15808		19.257	2.1441	1	705330	+		49145	16757	28211	28212	60033	60033					-0.0584714403594262
TQTYGPAYYA	10	Unmodified	_TQTYGPAYYA_					0	0	0			REV__nc|ENSG00000156735|O95429-2|BAG4	REV__nc|ENSG00000156735|O95429-2|BAG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.279296875	2	567.758746	1133.50294	0.45631	0.00025907	0.63366	0.00035977	1.09	0.00061884	567.7593338533078	63.774	0.75353	63.764	63.477	64.231	-0.0095291					60	26	4	0	0	0	0.30586	1	15885	15885		19.257	13.96	1	692470	+		49146	16757	28211	28212	60034	60034					-0.0584714403594262
TQVDAVLVSN	10	Unmodified	_TQVDAVLVSN_					0	0	0			REV__ENST00000333235.3_1_Y:27624438-27626982:+|nuORF	REV__ENST00000333235.3_1_Y:27624438-27626982:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2728271484375	2	523.279846	1044.54514	0.69257	0.00036241	-0.46909	-0.00024547	0.22348	0.00011694	523.279569265123	33.445	1.5739	33.511	33.074	34.648	0.06636					143	56	4	0	0	0	0.25219	1	6618	6618		26.268	1.2772	1	3618800	+		49147	20055	28212	28213	60035	60035					0.02464831372435583
TQWILEEIES	10	Unmodified	_TQWILEEIES_					0	0	0		nc|ENSG00000005436|P16383-2|GCFC2;ENSG00000005436|ENST00000321027|GCFC2;ENST00000486016.1_1_2:75917741-75921519:-|nuORF	nc|ENSG00000005436|P16383-2|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.3123779296875	2	624.311343	1246.60813	0.5626	0.00035124	0.86409	0.00053946	1.4267	0.0008907	624.3118711076511	84.851	0.79637	84.851	84.405	85.202	0					50	29	2	0	0	0	0.40992	1	22215	22215		1.6526	0.17072	1	199140			49148	334	28213	28214	60036	60036					-0.005306476301939256
TQWILEEIES	10	Unmodified	_TQWILEEIES_					0	0	0		nc|ENSG00000005436|P16383-2|GCFC2;ENSG00000005436|ENST00000321027|GCFC2;ENST00000486016.1_1_2:75917741-75921519:-|nuORF	nc|ENSG00000005436|P16383-2|GCFC2	nc|ENSG00000005436|P16383-2|GCFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3129272460938	2	624.311343	1246.60813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.86	1	84.847	84.347	85.347	-0.01284								0	0	0	0.37739	1	22251	22251		3.2813	0	1				49149	334	28213	28214	60037	60037					-0.005306476301939256
TRAQLLDYK	9	Unmodified	_TRAQLLDYK_					0	0	0		chr4:110542887-110548176|215|80.39|0.53|7.23|+|1|ENPEP,ENPEP|3	chr4:110542887-110548176|215|80.39|0.53|7.23|+|1|ENPEP,ENPEP|3	chr4:110542887-110548176|215|80.39|0.53|7.23|+|1|ENPEP,ENPEP|3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3010864257812	2	554.31148	1106.60841	-0.15805	-8.761E-05	0.45505	0.00025224	0.297	0.00016463	554.311956307678	12.718	0.18583	12.651	12.548	12.734	-0.067496					11	5	3	0	0	0	0.34809	1	216	216		1.6526	0.96225	1	23795			49150	161	28214	28215	60038	60038					0.05936816880330298
TRAQLLDYK	9	Unmodified	_TRAQLLDYK_					0	0	0		chr4:110542887-110548176|215|80.39|0.53|7.23|+|1|ENPEP,ENPEP|3	chr4:110542887-110548176|215|80.39|0.53|7.23|+|1|ENPEP,ENPEP|3	chr4:110542887-110548176|215|80.39|0.53|7.23|+|1|ENPEP,ENPEP|3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	554.31148	1106.60841	-0.021385	-1.1854E-05	-0.51488	-0.0002854	-0.53627	-0.00029726	554.3112681892919	12.695	0.20295	12.695	12.612	12.815	0	0.036896	-0.00047082	NaN	1.6526	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16447			49151	161	28214	28215							0.05936816880330298
TRAQLLDYK	9	Unmodified	_TRAQLLDYK_					0	0	0		chr4:110542887-110548176|215|80.39|0.53|7.23|+|1|ENPEP,ENPEP|3	chr4:110542887-110548176|215|80.39|0.53|7.23|+|1|ENPEP,ENPEP|3	chr4:110542887-110548176|215|80.39|0.53|7.23|+|1|ENPEP,ENPEP|3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	554.31148	1106.60841	0.027576	1.5285E-05	0.11933	6.6147E-05	0.14691	8.1433E-05	554.31213523677	12.729	0.15093	12.63	12.549	12.7	-0.099291	-0.028983	0.00023228	NaN	1.6526	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29850			49152	161	28214	28215							0.05936816880330298
TRARQKGL	8	Unmodified	_TRARQKGL_					0	0	0		ENST00000375199.7_1_1:19570195-19571411:-|nuORF	ENST00000375199.7_1_1:19570195-19571411:-|nuORF	ENST00000375199.7_1_1:19570195-19571411:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.28558349609375	2	465.2856	928.556647	0.034668	1.613E-05	-0.018845	-8.7682E-06	0.015823	7.3622E-06	465.2855521975359	79.782	1.1898	79.843	79.353	80.543	0.061417					134	45	5	0	0	0	0.44734	1	20813	20813		6.7232	6.7232	1	5421200			49153	9908	28215	28216	60039	60039					0.08951117977085232
TRARQKGLW	9	Unmodified	_TRARQKGLW_					0	0	0		ENST00000375199.7_1_1:19570195-19571411:-|nuORF	ENST00000375199.7_1_1:19570195-19571411:-|nuORF	ENST00000375199.7_1_1:19570195-19571411:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3247680664062	2	558.325257	1114.63596	0.36624	0.00020448	-0.53361	-0.00029793	-0.16736	-9.3444E-05	558.3246429415933	89.975	0.79398	89.975	89.69	90.484	0					163	66	3	0	0	0	0.33508	1	23908	23908		3.5965	0.31518	1	381520			49154	9908	28216	28217	60040	60040					0.08322764931222082
TRAVELCF	8	Unmodified	_TRAVELCF_					0	0	0			REV__IPO4|p.N256T|1|0.34|ENSG00000196497|chr14:24186781-24186781|T/G|missense_variant	REV__IPO4|p.N256T|1|0.34|ENSG00000196497|chr14:24186781-24186781|T/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.56488037109375	2	469.741845	937.469137	0.16505	7.7531E-05	-0.96163	-0.00045172	-0.79658	-0.00037419	469.7414744626208	29.682	0.44773	29.694	29.469	29.917	0.012266					21	14	2	0	0	0	0.34272	1	5368	5368		7.9102	3.5809	1	46054	+		49155	22769	28217	28218	60041	60041					-0.0020984400869110686
TREERTEGEL	10	Unmodified	_TREERTEGEL_					0	0	0			REV__nc|ENSG00000102024|P13797-3|PLS3	REV__nc|ENSG00000102024|P13797-3|PLS3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.2794189453125	2	610.299298	1218.58404	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.718	1	67.718	67.218	68.218	0								0	0	0	0.36126	1	17020	17020		10.074	1.9184	1		+		49156	14301	28218	28219	60042	60042					-0.01650488063864941
TREKIQAA	8	Unmodified	_TREKIQAA_					0	0	0		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.27392578125	2	458.764166	915.513779	-0.27693	-0.00012704	-0.014522	-6.6621E-06	-0.29145	-0.00013371	458.7640076186402	12.524	0.14931	12.524	12.433	12.582	0					6	4	2	0	0	0	0.46491	1	139	139		0.69038	0	1	13008			49157	7574	28219	28220	60043	60043					0.052643031289903774
TREMPLYFR	9	Unmodified	_TREMPLYFR_					0	0	0		ENST00000265631.9_1_7:95749828-95750029:-|nuORF	ENST00000265631.9_1_7:95749828-95750029:-|nuORF	ENST00000265631.9_1_7:95749828-95750029:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2637023925781	3	404.877981	1211.61211	-0.12033	-4.8719E-05	-2.3638	-0.00095704	-2.4841	-0.0010058	404.87657577725304	42.482	0.48765	42.573	42.23	42.717	0.091362					22	16	2	0	0	0	0.2603	1	9259	9259		2.086	1.4592	1	108230			49158	9049	28220	28221	60044	60044					0.01477163382537583
TREQPNPII	9	Unmodified	_TREQPNPII_					0	0	0			REV__HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	REV__HSP90AB1|p.R449Pfs*5|1|0.33|ENSG00000096384|chr6:44251765-44251766|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7946166992188	2	534.29583	1066.57711	0.75432	0.00040303	-1.7398	-0.00092959	-0.98552	-0.00052656	534.2946636037434	83.73	1.1328	83.73	82.9	84.033	0					61	44	2	0	0	0	0.24848	1	21903	21903		13.906	2.2658	1	460900	+		49159	14112	28221	28222	60045	60045					0.04648243846236255
TRERRQKRP	9	Unmodified	_TRERRQKRP_					0	0	0			REV__nc|ENSG00000165588|P32243|OTX2	REV__nc|ENSG00000165588|P32243|OTX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2107238769531	3	409.577805	1225.71158	-0.17225	-7.055E-05	0.99716	0.00040841	0.8249	0.00033786	409.578797990756	18.15	0.40032	18.15	17.898	18.299	0					28	13	3	0	0	0	0.26257	1	1786	1786		0.77653	0.14971	1	21616	+		49160	14454	28222	28223	60046	60046					0.10775742111491127
TRFQIQRCA	9	Unmodified	_TRFQIQRCA_					0	0	0		nc|ENSG00000183032|Q9BQT8-2|SLC25A21;ENSG00000183032|ENST00000331299|SLC25A21	nc|ENSG00000183032|Q9BQT8-2|SLC25A21	nc|ENSG00000183032|Q9BQT8-2|SLC25A21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7955322265625	2	561.795475	1121.5764	0.15448	8.6786E-05	0.42012	0.00023602	0.5746	0.00032281	561.7957968868445	61.19	3.6328	61.19	60.88	64.513	0					396	134	6	0	0	0	0.18803	1	15861	15861		25.399	25.399	1	65648000			49161	7340	28223	28224	60047	60047					0.020471259255373297
TRGEPRKTT	9	Unmodified	_TRGEPRKTT_					0	0	0			REV__ENST00000523006.1_1_7:139218986-139219103:+|nuORF	REV__ENST00000523006.1_1_7:139218986-139219103:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3034057617188	2	523.291079	1044.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.48	1	114.46	113.96	114.96	-0.019096								0	0	0	0.264	1	29724	29724		1.8442	0	1		+		49162	21923	28224	28225	60048	60048					0.04710475560705163
TRGGSKSD	8	Unmodified	_TRGGSKSD_					0	0	0			REV__ENSG00000231274|ENST00000612221|SBK3	REV__ENSG00000231274|ENST00000612221|SBK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2522888183594	2	404.201399	806.388245	-0.023005	-9.2985E-06	-0.36297	-0.00014671	-0.38597	-0.00015601	404.2011673309608	72.214	0.52705	72.187	71.901	72.428	-0.027267					30	18	3	0	0	0	0.34337	1	18388	18388		5.2307	5.2307	1	107150	+		49163	19133	28225	28226	60049	60049					-0.022694087272384422
TRGRRIKYLRI	11	Unmodified	_TRGRRIKYLRI_					0	0	0			REV__ENSG00000168216|ENST00000649934|LMBRD1	REV__ENSG00000168216|ENST00000649934|LMBRD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.97100830078125	3	477.972155	1430.89463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.39	1	106.39	105.89	106.89	0								0	0	0	0.3674	1	28122	28122		4.4062	1.7749	1		+		49164	17446	28226	28227	60050	60050					0.1964229617331057
TRHLLVKA	8	Unmodified	_TRHLLVKA_					0	0	0			REV__ENST00000464362.5_1_22:26862186-26867208:-|nuORF	REV__ENST00000464362.5_1_22:26862186-26867208:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.5647888183594	2	469.300719	936.586885	-0.018321	-8.5981E-06	0.50879	0.00023877	0.49046	0.00023018	469.3009245739504	29.699	0.4358	29.712	29.507	29.943	0.013474					22	14	2	0	0	0	0.34294	1	5375	5375		7.2892	2.5332	1	91925	+		49165	14160	28227	28228	60051	60051					0.11605476642273516
TRHRRTRRQ	9	Unmodified	_TRHRRTRRQ_					0	0	0			REV__ENSG00000063515|ENST00000086933|GSC2	REV__ENSG00000063515|ENST00000086933|GSC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8719482421875	2	633.87176	1265.72897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.8	1	116.83	116.33	117.33	0.020988								0	0	0	0.2672	1	30296	30296		0.52476	0	1		+		49166	13641	28228	28229	60052	60052					0.10673082437165249
TRHRRTRRQ	9	Unmodified	_TRHRRTRRQ_					0	0	0			REV__ENSG00000063515|ENST00000086933|GSC2	REV__ENSG00000063515|ENST00000086933|GSC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8727416992188	2	633.87176	1265.72897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.57	1	118.6	118.1	119.1	0.026253								0	0	0	0.2672	1	30702	30702		0.52476	0.12405	1		+		49167	13641	28228	28229	60053	60053					0.10673082437165249
TRIEKQTKH	9	Unmodified	_TRIEKQTKH_					0	0	0		ENST00000476142.1_1_3:56651192-56651654:+|nuORF;nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66	ENST00000476142.1_1_3:56651192-56651654:+|nuORF	ENST00000476142.1_1_3:56651192-56651654:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8281860351562	2	570.827829	1139.64111	-0.11143	-6.3608E-05	0.10218	5.8329E-05	-0.0092476	-5.2788E-06	570.827924571357	12.511	0.24819	12.511	12.364	12.612	0					11	7	2	0	0	0	0.3208	1	147	147		5.7319	0	1	46567			49168	7187	28229	28230	60054	60054					0.07687024003189435
TRIEKQTKH	9	Unmodified	_TRIEKQTKH_					0	0	0		ENST00000476142.1_1_3:56651192-56651654:+|nuORF;nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66	ENST00000476142.1_1_3:56651192-56651654:+|nuORF	ENST00000476142.1_1_3:56651192-56651654:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	570.827829	1139.64111	0.074944	4.278E-05	0.062657	3.5766E-05	0.1376	7.8546E-05	570.827852302554	12.483	0.31546	12.387	12.236	12.552	-0.096607	-0.061642	2.3382E-05	NaN	5.7319	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50430			49169	7187	28229	28230							0.07687024003189435
TRIEQGLF	8	Unmodified	_TRIEQGLF_					0	0	0			REV__ENSG00000158158|ENST00000377075|CNNM4	REV__ENSG00000158158|ENST00000377075|CNNM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.77825927734375	2	482.266542	962.51853	0.1541	7.4317E-05	0.33923	0.0001636	0.49333	0.00023792	482.2666895120047	16.825	0.5534	16.825	16.689	17.242	0					28	18	2	0	0	0	0.45942	1	1474	1474		2.5775	0	1	46235	+		49170	16804	28230	28231	60055	60055					0.03577187271764615
TRIVIIVKIIL	11	Unmodified	_TRIVIIVKIIL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|75|2|sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|75|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.9554443359375	2	640.955041	1279.89553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.519	1	17.519	17.019	18.019	0								0	0	0	0.3823	1	1654	1654		0	0	1		+		49171	22721	28231	28232	60056	60056					0.26677697769673614
TRIVIIVKIIL	11	Unmodified	_TRIVIIVKIIL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|75|2|sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|75|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.9557495117188	2	640.955041	1279.89553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.365	1	17.305	16.805	17.805	-0.060429								0	0	0	0.3823	1	1607	1607		0	0	1		+		49172	22721	28231	28232	60057	60057					0.26677697769673614
TRKDRLLK	8	Unmodified	_TRKDRLLK_					0	0	0		ENST00000549425.5_2_12:112443810-112443885:-|nuORF	ENST00000549425.5_2_12:112443810-112443885:-|nuORF	ENST00000549425.5_2_12:112443810-112443885:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.771484375	2	515.330008	1028.64546	0.17885	9.2166E-05	-0.15173	-7.8193E-05	0.027116	1.3973E-05	515.3297926191121	16.609	0.23192	16.546	16.414	16.646	-0.062534					12	7	2	0	0	0	0.34272	1	1345	1345		7.9102	0	1	38181			49173	11787	28232	28233	60058	60058					0.1322853321673847
TRKKENVV	8	Unmodified	_TRKKENVV_					0	0	0			REV__ENSG00000132424|ENST00000369239|PNISR	REV__ENSG00000132424|ENST00000369239|PNISR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.29217529296875	2	487.293091	972.571629	0.30745	0.00014982	-1.0324	-0.00050308	-0.72494	-0.00035326	487.2924752989867	80.939	0.89571	80.912	80.475	81.371	-0.026825					81	36	3	0	0	0	0.4396	1	21141	21141		9.3831	1.473	1	604700	+		49174	15570	28233	28234	60059	60059					0.08424565054417599
TRKNLQEP	8	Unmodified	_TRKNLQEP_					0	0	0		ENSG00000135824|ENST00000515211|RGS8;nc|ENSG00000135824|P57771-2|RGS8	ENSG00000135824|ENST00000515211|RGS8	ENSG00000135824|ENST00000515211|RGS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.29510498046875	2	493.274898	984.535243	0.55382	0.00027319	-0.35472	-0.00017497	0.19911	9.8214E-05	493.2746145991124	29.614	0.5045	29.614	29.413	29.917	0					35	17	3	0	0	0	0.43043	1	5308	5308		12.532	0.89125	1	208210			49175	3908	28234	28235	60060	60060					0.042356881577120475
TRKRIRYRFRR	11	Unmodified	_TRKRIRYRFRR_					0	0	0		ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2689208984375	3	536.665836	1606.97568	0.88421	0.00047453	2.1164	0.0011358	3.0006	0.0016103	536.6669967171342	50.833	0.20909	50.833	50.713	50.922	0					10	7	2	0	0	0	0.33352	1	11781	11781		0	0	1	115200			49176	1470	28235	28236	60061	60061					0.1964699693601233
TRKTKNKENQ	10	Unmodified	_TRKTKNKENQ_					0	0	0			REV__ENSG00000203867|ENST00000369519|RBM20	REV__ENSG00000203867|ENST00000369519|RBM20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.23492431640625	3	416.233592	1245.67895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.13	1	103.13	102.63	103.63	0								0	0	0	0.37157	1	27410	27410		3.0723	0.81953	1		+		49177	18908	28236	28237	60062	60062					0.06593490197974461
TRKTKNKENQ	10	Unmodified	_TRKTKNKENQ_					0	0	0			REV__ENSG00000203867|ENST00000369519|RBM20	REV__ENSG00000203867|ENST00000369519|RBM20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.5696105957031	3	416.233592	1245.67895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.15	1	103.15	102.65	103.65	0								0	0	0	0.37157	1	27414	27414		3.0723	0	1		+		49178	18908	28236	28237	60063	60063					0.06593490197974461
TRKTKNKENQ	10	Unmodified	_TRKTKNKENQ_					0	0	0			REV__ENSG00000203867|ENST00000369519|RBM20	REV__ENSG00000203867|ENST00000369519|RBM20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.23486328125	3	416.233592	1245.67895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.69	1	103.7	103.2	104.2	0.0082703								0	0	0	0.37807	1	27551	27551		1.4551	0.34536	1		+		49179	18908	28236	28237	60064	60064					0.06593490197974461
TRKTKNKENQ	10	Unmodified	_TRKTKNKENQ_					0	0	0			REV__ENSG00000203867|ENST00000369519|RBM20	REV__ENSG00000203867|ENST00000369519|RBM20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.2351379394531	3	416.233592	1245.67895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.85	1	103.85	103.35	104.35	-0.0011139								0	0	0	0.37807	1	27608	27608		1.4551	0.34536	1		+		49180	18908	28236	28237	60065	60065					0.06593490197974461
TRLILFVLL	9	Unmodified	_TRLILFVLL_					0	0	0		nc|ENSG00000136758|Q96TA2|YME1L1;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF	nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2|YME1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7962036132812	2	544.365527	1086.7165	0.63679	0.00034665	-0.31421	-0.00017104	0.32258	0.0001756	544.3650944030903	36.696	0.39525	36.696	36.59	36.985	0					18	13	2	0	0	0	0.25706	1	7454	7454		3.5965	0	1	125760			49181	12721	28237	28238	60066	60066					0.1766123320155657
TRLLLCPAPPL	11	Unmodified	_TRLLLCPAPPL_					0	0	0			REV__ENST00000461325.1_1_3:52550214-52551339:+|nuORF	REV__ENST00000461325.1_1_3:52550214-52551339:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3590087890625	2	597.357376	1192.7002	0.5263	0.00031439	0.94113	0.00056219	1.4674	0.00087658	597.3585424498953	90.185	1.4279	90.185	89.495	90.923	0					313	115	4	0	0	0	0.42346	4	23912	23832;23870;23912;23953		8.1555	2.4237	1	1038300	+		49182	21218	28238	28239	60067;60068;60069;60070	60069					0.11155783973140387
TRLLLCPAPPL	11	Unmodified	_TRLLLCPAPPL_					0	0	0			REV__ENST00000461325.1_1_3:52550214-52551339:+|nuORF	REV__ENST00000461325.1_1_3:52550214-52551339:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.359130859375	2	597.357376	1192.7002	0.51945	0.0003103	0.56717	0.0003388	1.0866	0.0006491	597.3586078268477	90.167	1.2978	90.167	89.63	90.927	0.0003891					299	105	4	0	0	0	0.42346	2	23863	23863;23909		8.1555	4.2111	1	970830	+		49183	21218	28238	28239	60071;60072	60071					0.11155783973140387
TRLPKGAVLY	10	Unmodified	_TRLPKGAVLY_					0	0	0		ENSG00000108826|ENST00000225969|MRPL27	ENSG00000108826|ENST00000225969|MRPL27	ENSG00000108826|ENST00000225969|MRPL27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.34033203125	2	559.340041	1116.66553	0.1097	6.1359E-05	-0.028148	-1.5744E-05	0.081551	4.5615E-05	559.3398285745812	31.132	0.3571	31.161	30.926	31.283	0.029716					22	12	3	0	0	0	0.38027	1	5794	5794		7.1017	0	1	169820			49184	2217	28239	28240	60073	60073					0.11186284156724469
TRLPLLQQL	9	Unmodified	_TRLPLLQQL_					0	0	0			REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7698974609375	2	541.340041	1080.66553	0.60563	0.00032785	1.0631	0.0005755	1.6687	0.00090335	541.3409183305278	58.462	0.41119	58.462	58.328	58.739	0					15	13	2	0	0	0	0.25431	1	14201	14201		9.3831	0	1	178030	+		49185	21751	28240	28241	60074	60074					0.12842284156727146
TRLPLLQQL	9	Unmodified	_TRLPLLQQL_					0	0	0			REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	REV__ENST00000506539.5_1_5:65018131-65088776:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7696533203125	2	541.340041	1080.66553	0.54077	0.00029274	0.51642	0.00027956	1.0572	0.0005723	541.3404769974264	58.33	0.21783	58.416	58.336	58.554	0.085617					9	7	2	0	0	0	0.259	1	14136	14136		5.2969	0	1	113320	+		49186	21751	28240	28241	60075	60075					0.12842284156727146
TRLRLIRHYVE	11	Unmodified	_TRLRLIRHYVE_					0	0	0		ENSG00000178409|ENST00000369042|BEND3	ENSG00000178409|ENST00000369042|BEND3	ENSG00000178409|ENST00000369042|BEND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.95635986328125	3	485.956282	1454.84702	0.1837	8.927E-05	-0.1021	-4.9617E-05	0.081597	3.9653E-05	485.9562235042846	48.889	0.8626	48.921	48.632	49.494	0.032043					75	30	4	0	0	0	0.46842	1	11216	11216		2.2527	0	1	1721200			49187	7055	28241	28242	60076	60076					0.13778597182476915
TRLWWPRGKWP	11	Unmodified	_TRLWWPRGKWP_					0	0	0			REV__nc|ENSG00000142303|Q9H324|ADAMTS10	REV__nc|ENSG00000142303|Q9H324|ADAMTS10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7403259277344	3	494.942084	1481.80442	0.33752	0.00016705	0.88455	0.0004378	1.2221	0.00060485	494.9426438523661	26.92	0.96837	26.92	26.44	27.408	0					74	33	3	0	0	0	0.33347	1	4399	4399		0.45452	0.45452	1	425420	+		49188	16113	28242	28243	60077	60077					0.08279246844881527
TRLYALWPRP	10	Unmodified	_TRLYALWPRP_					0	0	0			REV__chr8:143596980-143597348|150|24.79|0.58|5.41|-|2|None,EEF1D|1	REV__chr8:143596980-143597348|150|24.79|0.58|5.41|-|2|None,EEF1D|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.6067199707031	3	424.911902	1271.71388	-0.037153	-1.5787E-05	-3.2671	-0.0013882	-3.3043	-0.001404	424.9105435421628	38.007	0.44408	38.098	37.983	38.427	0.090881					18	15	2	0	0	0	0.31899	1	7925	7925		7.4771	0	1	72700	+		49189	13222	28243	28244	60078	60078					0.08888777796596514
TRLYLKQKAT	10	Unmodified	_TRLYLKQKAT_					0	0	0			REV__ENSG00000244414|ENST00000320493|CFHR1	REV__ENSG00000244414|ENST00000320493|CFHR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.3558959960938	2	611.36933	1220.72411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.792	1	82.865	82.365	83.365	0.073097								0	0	0	0.37157	1	21621	21621		5.7319	0	1		+		49190	19201	28244	28245	60079	60079					0.12257340731162003
TRMVSPASLR	10	Unmodified	_TRMVSPASLR_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8250732421875	2	559.310958	1116.60736	0.17906	0.00010015	1.0247	0.00057311	1.2037	0.00067326	559.3115465893042	18.347	0.64304	18.347	17.835	18.479	0					35	21	2	0	0	0	0.39227	1	1860	1860		4.897	0.95262	1	48822			49191	2422	28245	28246	60080	60080					0.053722792397593366
TRMVSPASLR	10	Unmodified	_TRMVSPASLR_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.8246459960938	2	559.310958	1116.60736	-0.021453	-1.1999E-05	-0.27161	-0.00015192	-0.29307	-0.00016392	559.3105974174935	18.381	0.45192	18.323	17.98	18.432	-0.058174					28	15	2	0	0	0	0.39227	1	1930	1930		4.897	1.3005	1	47704			49192	2422	28245	28246	60081	60081					0.053722792397593366
TRNDYVMMY	9	2 Oxidation (M)	_TRNDYVM(Oxidation (M))M(Oxidation (M))Y_		TRNDYVM(1)M(1)Y		TRNDYVM(130)M(130)Y	0	0	2		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.7550048828125	2	612.754824	1223.49509	0.26536	0.0001626	-0.138	-8.4558E-05	0.12737	7.8045E-05	612.7548960864995	31.841	1.0799	31.841	31.502	32.582	0					96	38	4	0	0	0	0.00078391	3	5991	5944;5991;6042		125.53	103.78	1	2283900			49193	6334	28246	28247	60082;60083;60084	60083		745;746			-0.10771362619357205
TRNDYVMMY	9	2 Oxidation (M)	_TRNDYVM(Oxidation (M))M(Oxidation (M))Y_		TRNDYVM(1)M(1)Y		TRNDYVM(110)M(110)Y	0	0	2		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.754638671875	2	612.754824	1223.49509	0.32203	0.00019733	-0.1082	-6.6301E-05	0.21383	0.00013103	612.7548696713258	31.792	0.95033	31.834	31.543	32.493	0.042366					84	33	4	0	0	0	0.0016712	3	5940	5940;5987;6033		114.2	94.945	1	2828900			49194	6334	28246	28247	60085;60086;60087	60085		745;746			-0.10771362619357205
TRNDYVMMY	9	2 Oxidation (M)	_TRNDYVM(Oxidation (M))M(Oxidation (M))Y_		TRNDYVM(1)M(1)Y		TRNDYVM(100)M(100)Y	0	0	2		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.7551879882812	2	612.754824	1223.49509	0.26501	0.00016238	-0.07748	-4.7476E-05	0.18752	0.00011491	612.7550138178123	31.766	1.1697	31.807	31.447	32.616	0.040989					103	41	4	0	0	0	0.0028542	2	5924	5924;5978		103.42	86.307	1	2301900			49195	6334	28246	28247	60088;60089	60088		745;746			-0.10771362619357205
TRNKAFRA	8	Unmodified	_TRNKAFRA_					0	0	0		ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.2680969238281	2	482.277775	962.540997	-0.13491	-6.5066E-05	-1.7896	-0.00086311	-1.9246	-0.00092817	482.276821138365	13.14	0.24966	13.14	12.977	13.227	0					17	8	3	0	0	0	0.46022	1	361	361		2.3027	0	1	44318			49196	8040	28247	28248	60090	60090					0.05822831460022826
TRNKILYR	8	Unmodified	_TRNKILYR_					0	0	0		L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|73|2|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|73|2|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|73|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2732543945312	2	532.322183	1062.62981	0.55027	0.00029292	0.020522	1.0924E-05	0.57079	0.00030385	532.8236037451956	20.396	0.24743	20.286	20.132	20.379	-0.11003					12	9	2	0	0	0	0.34438	1	2496	2496		0.6015	0	1	182030			49197	12482	28248	28249	60091	60091					0.101002466996988
TRPHSLAPF	9	Unmodified	_TRPHSLAPF_					0	0	0		ENST00000397615.6_1_11:504844-504979:-|nuORF	ENST00000397615.6_1_11:504844-504979:-|nuORF	ENST00000397615.6_1_11:504844-504979:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2922973632812	2	513.279983	1024.54541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.926	1	63.022	62.522	63.522	0.095722								0	0	0	0.21726	1	15547	15547		16.942	1.0951	1				49198	10142	28249	28250	60092	60092					0.03412295882935723
TRPPVRLV	8	Unmodified	_TRPPVRLV_					0	0	0		ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.56488037109375	2	469.300719	936.586885	0.15301	7.1809E-05	0.13929	6.5371E-05	0.29231	0.00013718	469.3007155085513	29.667	0.47898	29.68	29.469	29.948	0.012266					19	15	2	0	0	0	0.34294	1	5368	5368		7.2892	0	1	82437			49199	4317	28250	28251	60093	60093					0.11605476642273516
TRPVVEGSL	9	Unmodified	_TRPVVEGSL_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.9747009277344	2	479.271824	956.529095	0.2627	0.0001259	-0.25866	-0.00012397	0.0040379	1.9352E-06	479.2716533264495	38.238	0.58445	38.335	38.093	38.678	0.097527					33	20	2	0	0	0	0.22596	1	7931	7931		10.824	0	1	249430			49200	2211	28251	28252	60094	60094					0.04909169926202139
TRQAVDQAPPL	11	Unmodified	_TRQAVDQAPPL_					0	0	0		ENST00000303391.10_2_X:153295339-153295543:-|nuORF	ENST00000303391.10_2_X:153295339-153295543:-|nuORF	ENST00000303391.10_2_X:153295339-153295543:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3265380859375	2	598.325119	1194.63569	0.42158	0.00025224	-0.29861	-0.00017867	0.12297	7.3574E-05	598.3251513417945	96.554	0.5172	96.548	96.27	96.788	-0.0055466					99	51	3	0	0	0	0.46655	1	25819	25819		2.4985	0.41248	1	128450			49201	9247	28252	28253	60095	60095					0.046153004207099
TRQHIILM	8	Unmodified	_TRQHIILM_					0	0	0			REV__ENSG00000256087|ENST00000221315|ZNF432	REV__ENSG00000256087|ENST00000221315|ZNF432	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8165588378906	2	506.292037	1010.56952	-0.037895	-1.9186E-05	-0.26715	-0.00013525	-0.30504	-0.00015444	506.29195058312735	12.278	0.19303	12.278	12.171	12.364	0					11	6	2	0	0	0	0.34434	1	52	52		0.79363	0	1	27446	+		49202	19249	28253	28254	60096	60096					0.06465813044974311
TRQKLLFML	9	Unmodified	_TRQKLLFML_					0	0	0		ENST00000502850.5_1_4:77053774-77066720:-|nuORF	ENST00000502850.5_1_4:77053774-77066720:-|nuORF	ENST00000502850.5_1_4:77053774-77066720:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3455810546875	2	575.344269	1148.67399	0.36616	0.00021067	1.5097	0.00086857	1.8758	0.0010792	575.3454640549686	88.497	1.7325	88.497	87.398	89.131	0					189	84	4	0	0	0	0.34681	1	23499	23499		1.8442	0	1	1263200			49203	11282	28254	28255	60097	60097					0.105595148016846
TRQPTVISH	9	Unmodified	_TRQPTVISH_					0	0	0		BARX2|p.G230Yfs*31|1|0.08|ENSG00000043039|chr11:129451249-129451250|-/TATAACCTCAC|frameshift_variant;ENSG00000043039|ENST00000281437|BARX2	BARX2|p.G230Yfs*31|1|0.08|ENSG00000043039|chr11:129451249-129451250|-/TATAACCTCAC|frameshift_variant	BARX2|p.G230Yfs*31|1|0.08|ENSG00000043039|chr11:129451249-129451250|-/TATAACCTCAC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.322021484375	2	519.788173	1037.56179	0.057597	2.9938E-05	0.033535	1.7431E-05	0.091132	4.7369E-05	519.7885319730764	12.347	0.71475	12.347	12.1	12.815	0					69	25	4	0	0	0	0.25988	1	236	236		3.9444	1.6417	1	647460			49204	70	28255	28256	60098	60098					0.0445137704903118
TRQPYAIK	8	Unmodified	_TRQPYAIK_					0	0	0		PSKH1|p.K255Afs*2|1|0.11|ENSG00000159792|chr16:67909511-67909512|-/GCAT|frameshift_variant;ENSG00000159792|ENST00000291041|PSKH1	PSKH1|p.K255Afs*2|1|0.11|ENSG00000159792|chr16:67909511-67909512|-/GCAT|frameshift_variant	PSKH1|p.K255Afs*2|1|0.11|ENSG00000159792|chr16:67909511-67909512|-/GCAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7660217285156	2	488.782359	975.550165	0.64546	0.00031549	-1.3234	-0.00064685	-0.67792	-0.00033136	488.7818303457772	32.219	0.38138	32.275	32.097	32.478	0.055309					22	13	2	0	0	0	0.42642	1	6144	6144		13.906	1.3745	1	208090			49205	5424	28256	28257	60099	60099					0.06141180025701942
TRQSNIFK	8	Unmodified	_TRQSNIFK_					0	0	0		ENSG00000154007|ENST00000284142|ASB17	ENSG00000154007|ENST00000284142|ASB17	ENSG00000154007|ENST00000284142|ASB17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7903137207031	2	497.277441	992.540328	0.00059697	2.9686E-07	0.51497	0.00025608	0.51556	0.00025638	497.27768364224477	18.655	0.47043	18.597	18.458	18.929	-0.058174					29	16	2	0	0	0	0.34388	1	2017	2017		1.4819	0	1	59126			49206	5100	28257	28258	60100	60100					0.04375992020322883
TRREDKRQK	9	Unmodified	_TRREDKRQK_					0	0	0			REV__nc|ENSG00000104442|Q9NVT9-2|ARMC1	REV__nc|ENSG00000104442|Q9NVT9-2|ARMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8470458984375	2	608.847084	1215.67962	0.50749	0.00030899	-0.12153	-7.3996E-05	0.38596	0.00023499	608.8470185079906	84.018	2.8329	84.001	83.288	86.121	-0.016823					302	115	3	0	0	0	0.33508	1	21883	21883		3.5965	3.5965	1	2678900	+		49207	22925	28258	28259	60101	60101					0.08040329637697141
TRRELRRREV	10	Unmodified	_TRRELRRREV_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.60833740234375	3	457.607764	1369.80146	0.24866	0.00011379	0.47265	0.00021629	0.72131	0.00033008	457.6080920837398	88.025	1.3975	88.025	86.966	88.364	0					151	66	3	0	0	0	0.4046	1	23235	23235		2.6312	0.19645	1	1244500	+		49208	15601	28259	28260	60102	60102					0.1313537172004544
TRRRLRAET	9	Unmodified	_TRRRLRAET_					0	0	0			REV__ENSG00000088812|ENST00000262919|ATRN	REV__ENSG00000088812|ENST00000262919|ATRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8447875976562	2	579.844345	1157.67414	0.44308	0.00025692	0.2727	0.00015812	0.71577	0.00041504	579.8442528514283	92.459	0.68902	92.459	92.205	92.894	0.00046539					96	48	3	0	0	0	0.34681	1	24638	24638		1.8442	0	1	414130	+		49209	14012	28260	28261	60103	60103					0.10160650845887176
TRRRPFWKRRK	11	Unmodified	_TRRRPFWKRRK_					0	0	0		nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.6588745117188	3	529.658681	1585.95422	0.47218	0.00025009	-0.15967	-8.4571E-05	0.31251	0.00016552	529.9928210127653	35.562	0.44618	35.562	35.354	35.8	0					34	15	3	0	0	0	0.48558	1	7138	7138		0	0	1	976820			49210	12666	28261	28262	60104	60104					0.18467611907317405
TRRRPFWKRRK	11	Unmodified	_TRRRPFWKRRK_					0	0	0		nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	529.658681	1585.95422	0.47218	0.00025009	-0.15967	-8.4571E-05	0.31251	0.00016552	529.9928210127653	35.562	0.44618	35.562	35.354	35.8	0	-0.013957	-8.738E-06	NaN	0	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	976820			49211	12666	28261	28262							0.18467611907317405
TRRRPFWKRRK	11	Unmodified	_TRRRPFWKRRK_					0	0	0		nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	529.658681	1585.95422	0.36921	0.00019555	-0.25339	-0.00013421	0.11582	6.1345E-05	529.6584327926876	35.498	0.50126	35.579	35.294	35.796	0.081314	0.0028657	-0.00015765	NaN	0	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1003400			49212	12666	28261	28262							0.18467611907317405
TRRRRELEG	9	Unmodified	_TRRRRELEG_					0	0	0			REV__nc|ENSG00000110844|Q6NWY9-3|PRPF40B	REV__nc|ENSG00000110844|Q6NWY9-3|PRPF40B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8338623046875	2	586.833977	1171.6534	0.28065	0.0001647	0.15006	8.8058E-05	0.43071	0.00025275	586.8338136975857	82.166	2.7659	82.235	81.4	84.166	0.068993					315	113	4	0	0	0	0.33276	1	21639	21639		3.9444	0.3479	1	1932100	+		49213	14685	28262	28263	60105	60105					0.07444060466241353
TRRRRRGPSP	10	Unmodified	_TRRRRRGPSP_					0	0	0			REV__ENSG00000156466|ENST00000287020|GDF6	REV__ENSG00000156466|ENST00000287020|GDF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5819396972656	3	413.581549	1237.72282	0.38402	0.00015882	0.11777	4.8706E-05	0.50178	0.00020753	413.58176939965705	86.111	4.0629	86.196	83.932	87.995	0.084251					387	170	3	0	0	0	0.41085	1	22507	22507		0.62683	0	1	985690	+		49214	16747	28263	28264	60106	60106					0.1134656420565534
TRRRYYRHSLL	11	Unmodified	_TRRRYYRHSLL_					0	0	0		nc|ENSG00000170222|Q3LIE5-3|ADPRM;ENSG00000170222|ENST00000379774|ADPRM	nc|ENSG00000170222|Q3LIE5-3|ADPRM	nc|ENSG00000170222|Q3LIE5-3|ADPRM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3009033203125	3	507.623414	1519.84841	0.9389	0.00047661	1.0805	0.00054848	2.0194	0.0010251	507.6238964676283	47.254	0.45395	47.309	47.037	47.491	0.054375					27	16	2	0	0	0	0.33334	1	10632	10632		1.2148	1.2148	1	378160			49215	6432	28264	28265	60107	60107					0.10928231271213917
TRRSRRRGPP	10	Unmodified	_TRRSRRRGPP_					0	0	0		ENST00000311806.7_1_3:38207121-38207184:+|nuORF	ENST00000311806.7_1_3:38207121-38207184:+|nuORF	ENST00000311806.7_1_3:38207121-38207184:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5818176269531	3	413.581549	1237.72282	0.391	0.00016171	0.30076	0.00012439	0.69176	0.0002861	413.5817780102486	86.097	3.4873	86.088	84.794	88.281	-0.0090027					334	151	4	0	0	0	0.40262	1	22597	22597		1.4551	1.4551	1	1135900			49216	9317	28265	28266	60108	60108					0.11346564205632603
TRRSRRRGPP	10	Unmodified	_TRRSRRRGPP_					0	0	0		ENST00000311806.7_1_3:38207121-38207184:+|nuORF	ENST00000311806.7_1_3:38207121-38207184:+|nuORF	ENST00000311806.7_1_3:38207121-38207184:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8685302734375	2	619.868686	1237.72282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.822	1	90.822	90.322	91.322	0.0003891								0	0	0	0.37739	1	24078	24078		3.2813	2.088	1				49217	9317	28265	28266	60109	60109					0.11346564205632603
TRRYSLTI	8	Unmodified	_TRRYSLTI_					0	0	0			REV__L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|67|2|sense	REV__L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|67|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2928466796875	2	505.293091	1008.57163	0.49092	0.00024806	-1.719	-0.0008686	-1.2281	-0.00062054	505.29251818480225	87.042	0.54341	87.042	86.755	87.299	0					32	21	2	0	0	0	0.43302	1	22949	22949		11.64	1.5664	1	316990	+		49218	22808	28266	28267	60110	60110					0.06768565054414921
TRSKSKHELK	10	Unmodified	_TRSKSKHELK_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.P928Sfs*28|1|0.33|ENSG00000164889|chr7:151074281-151074282|-/T|frameshift_variant	nc|ENSG00000164889|P04920-2|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.23797607421875	3	405.238566	1212.69387	0.098258	3.9818E-05	-0.90605	-0.00036717	-0.8078	-0.00032735	405.2385629257088	21.231	2.0552	21.121	20.581	22.636	-0.11003					204	73	5	0	0	0	0.39145	1	3022	3022		5.0475	0.51865	1	10249000			49219	5891	28267	28268	60111	60111					0.09602982065962351
TRSSTLTLH	9	Unmodified	_TRSSTLTLH_					0	0	0		ENSG00000106261|ENST00000324306|ZKSCAN1	ENSG00000106261|ENST00000324306|ZKSCAN1	ENSG00000106261|ENST00000324306|ZKSCAN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.28009033203125	2	508.28018	1014.54581	0.21415	0.00010885	-0.12967	-6.5907E-05	0.084484	4.2942E-05	508.2801016425764	19.49	0.75308	19.375	19.116	19.869	-0.11592					64	25	4	0	0	0	0.20626	1	2227	2227		22.736	0	1	279140			49220	2064	28268	28269	60112	60112					0.03911670812135526
TRTKDKYRVV	10	Unmodified	_TRTKDKYRVV_					0	0	0		nc|ENSG00000113722|P47902-2|CDX1;ENSG00000113722|ENST00000231656|CDX1;ENSG00000165556|ENST00000381020|CDX2	nc|ENSG00000113722|P47902-2|CDX1	nc|ENSG00000113722|P47902-2|CDX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3692626953125	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.227	1	12.131	11.631	12.631	-0.096607								0	0	0	0.38203	1	66	66		0.35063	0	1				49221	2526	28269	28270	60113	60113					0.10339555100040343
TRTKQKTL	8	Unmodified	_TRTKQKTL_					0	0	0			REV__nc|ENSG00000126583|P05129-2|PRKCG	REV__nc|ENSG00000126583|P05129-2|PRKCG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7897033691406	2	488.300916	974.587279	0.43917	0.00021445	0.89515	0.0004371	1.3343	0.00065155	488.3013262990334	87.22	0.67421	87.215	86.747	87.421	-0.0056229					42	28	2	0	0	0	0.43302	1	22931	22931		11.64	11.64	1	160280	+		49222	15316	28270	28271	60114	60114					0.09896851571477328
TRTPNQTP	8	Unmodified	_TRTPNQTP_					0	0	0			REV__Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|31|1|sense	REV__Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|31|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2665710449219	2	457.738148	913.461744	-0.082485	-3.7757E-05	-0.2151	-9.846E-05	-0.29759	-0.00013622	457.7380341377837	18.95	0.56998	18.892	18.654	19.224	-0.058174					31	19	2	0	0	0	0.34272	1	2170	2170		7.9102	0	1	34085	+		49223	22734	28271	28272	60115	60115					0.0015513971522977954
TRTTGGGPPA	10	Unmodified	_TRTTGGGPPA_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2662353515625	2	457.738148	913.461744	-0.10287	-4.7087E-05	-0.11411	-5.2232E-05	-0.21698	-9.9319E-05	457.73791471903735	18.885	0.44993	18.885	18.646	19.095	0					24	15	2	0	0	0	0.32033	1	2090	2090		3.5965	0.31518	1	45816	+		49224	13129	28272	28273	60116	60116					0.0015513971524114822
TRTVIYEIP	9	Unmodified	_TRTVIYEIP_					0	0	0		ENSG00000197461|ENST00000402802|PDGFA;nc|ENSG00000197461|P04085|PDGFA;ENST00000482462.1_1_7:540672-552294:-|nuORF	ENSG00000197461|ENST00000402802|PDGFA	ENSG00000197461|ENST00000402802|PDGFA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.7875366210938	2	546.308406	1090.60226	0.40561	0.00022159	-0.10982	-5.9998E-05	0.29578	0.00016159	546.3083930335754	24.577	0.51079	24.577	24.279	24.79	0					34	16	3	0	0	0	0.25843	1	3855	3855		5.7319	0	1	72127			49225	7966	28273	28274	60117	60117					0.06058298648804339
TRTVRVKLLL	10	Unmodified	_TRTVRVKLLL_					0	0	0		ENST00000228506.7_1_12:121137175-121137400:+|nuORF	ENST00000228506.7_1_12:121137175-121137400:+|nuORF	ENST00000228506.7_1_12:121137175-121137400:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.903076171875	2	599.90334	1197.79213	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.85	1	118.85	118.35	119.35	0								0	0	0	0.38202	1	30688	30688		0.40072	0	1				49226	8852	28274	28275	60118	60118					0.20114210381848352
TRVINVAK	8	Unmodified	_TRVINVAK_					0	0	0		ENST00000335117.8_1_19:20308384-20308627:+|nuORF	ENST00000335117.8_1_19:20308384-20308627:+|nuORF	ENST00000335117.8_1_19:20308384-20308627:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7847595214844	2	450.784902	899.55525	0.10123	4.5634E-05	-0.16692	-7.5244E-05	-0.065685	-2.961E-05	450.78470017393073	19.787	0.5659	19.787	19.547	20.113	0					45	20	3	0	0	0	0.1951	1	2319	2319		43.858	1.9027	1	196190			49227	9475	28275	28276	60119	60119					0.10145483888322815
TRVKAVRIL	9	Unmodified	_TRVKAVRIL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;TXNIP|p.E37G|1|0.35|ENSG00000265972|chr1:145996157-145996157|T/C|missense_variant	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3200073242188	2	528.356025	1054.6975	0.38178	0.00020171	0.29048	0.00015348	0.67226	0.00035519	528.3561207271163	26.756	0.47712	26.725	26.554	27.031	-0.031212					28	16	2	0	0	0	0.24993	1	4484	4484		13.042	6.3193	1	124970			49228	8673	28276	28277	60120	60120					0.17233696630501072
TRVKAVRIL	9	Unmodified	_TRVKAVRIL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;TXNIP|p.E37G|1|0.35|ENSG00000265972|chr1:145996157-145996157|T/C|missense_variant	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3200073242188	2	528.356025	1054.6975	0.63268	0.00033428	0.11758	6.2127E-05	0.75026	0.00039641	528.3560286775273	26.821	0.44691	26.809	26.567	27.014	-0.011562					30	15	3	0	0	0	0.24848	1	4491	4491		13.906	3.0821	1	147740			49229	8673	28276	28277	60121	60121					0.17233696630501072
TRYTLLFD	8	Unmodified	_TRYTLLFD_					0	0	0			REV__ENSG00000109756|ENST00000691494|RAPGEF2;REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7756958007812	2	514.7742	1027.53385	0.24659	0.00012694	2.2803	0.0011738	2.5269	0.0013008	514.775272220374	21.999	0.40965	21.898	21.716	22.125	-0.10034					23	14	3	0	0	0	0.45169	1	3063	3063		5.2307	0	1	96628	+		49230	23047;14651	28277	28278	60122	60122					0.021180540689556437
TSAFMPVLK	9	Oxidation (M)	_TSAFM(Oxidation (M))PVLK_		TSAFM(1)PVLK		TSAFM(76)PVLK	0	0	1		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A;ENST00000505479.1_1_4:83740229-83742267:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8212890625	2	505.272978	1008.5314	0.15755	7.9607E-05	-0.82831	-0.00041852	-0.67075	-0.00033891	505.2722402980659	41.063	1.0305	41.063	40.473	41.504	0					87	37	4	0	0	0	0.016005	1	8774	8774		75.761	31.354	1	1138100			49231	4177	28278	28279	60123	60123		536			0.027478823396563712
TSAFMPVLK	9	Oxidation (M)	_TSAFM(Oxidation (M))PVLK_		TSAFM(1)PVLK		TSAFM(93)PVLK	0	0	1		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A;ENST00000505479.1_1_4:83740229-83742267:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2725830078125	2	505.272978	1008.5314	0.3311	0.00016729	-1.3511	-0.00068265	-1.02	-0.00051536	505.27192878195024	40.907	0.71186	41	40.693	41.405	0.09267					68	26	3	0	0	0	0.0080395	1	8811	8811		92.653	44.307	1	1043700			49232	4177	28278	28279	60124	60124		536			0.027478823396563712
TSAFMPVLK	9	Oxidation (M)	_TSAFM(Oxidation (M))PVLK_		TSAFM(1)PVLK		TSAFM(86)PVLK	0	0	1		nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A;ENST00000505479.1_1_4:83740229-83742267:-|nuORF	nc|ENSG00000138674|O94979-6|SEC31A	nc|ENSG00000138674|O94979-6|SEC31A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2729187011719	2	505.272978	1008.5314	0.1234	6.2351E-05	-0.90554	-0.00045755	-0.78214	-0.0003952	505.2724677159121	40.897	0.67504	40.994	40.639	41.314	0.097572					70	24	4	0	0	0	0.016005	1	8778	8778		85.642	32.066	1	1212500			49233	4177	28278	28279	60125	60125		536			0.027478823396563712
TSAGHLAPFP	10	Unmodified	_TSAGHLAPFP_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.76617431640625	2	499.258717	996.50288	0.50629	0.00025277	-0.5481	-0.00027364	-0.041808	-2.0873E-05	499.25831670552196	63.726	0.24893	63.822	63.681	63.93	0.095722					11	8	2	0	0	0	0.31165	1	15767	15767		15.847	1.2655	1	70027	+		49234	19116	28279	28280	60126	60126					0.0044890075471357704
TSAGPQAILA	10	Unmodified	_TSAGPQAILA_					0	0	0		chr19:6586405-6586581|130|62.98|0.04|10.47|-|1|TE_info:AluJr,AluJr_dup76409,Alu,SINE,donor,+,6586581,6586803|CD70,None|5;chr19:6586405-6590841|363|25.29|0.07|8.58|-|1|CD70,CD70|1	chr19:6586405-6586581|130|62.98|0.04|10.47|-|1|TE_info:AluJr,AluJr_dup76409,Alu,SINE,donor,+,6586581,6586803|CD70,None|5	chr19:6586405-6586581|130|62.98|0.04|10.47|-|1|TE_info:AluJr,AluJr_dup76409,Alu,SINE,donor,+,6586581,6586803|CD70,None|5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2401123046875	2	464.758549	927.502546	0.29912	0.00013902	-0.39341	-0.00018284	-0.094292	-4.3823E-05	464.75826182406223	20.892	0.62576	20.782	20.553	21.178	-0.11003					34	21	2	0	0	0	0.31847	1	2763	2763		6.7232	0.51738	1	75886			49235	146	28280	28281	60127	60127					0.035894810348509054
TSALAFYAQ	9	Unmodified	_TSALAFYAQ_					0	0	0			REV__WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant	REV__WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2633056640625	2	486.245275	970.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.614	1	51.661	51.161	52.161	0.046574								0	0	0	0.19804	1	12058	12058		23.148	2.6948	1		+		49236	17090	28281	28282	60128	60128					-0.010422078564715775
TSALAFYAQ	9	Unmodified	_TSALAFYAQ_					0	0	0			REV__WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant	REV__WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.26348876953125	2	486.245275	970.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.67	1	51.679	51.179	52.179	0.0095634								0	0	0	0.19804	1	12067	12067		23.148	1.4018	1		+		49237	17090	28281	28282	60129	60129					-0.010422078564715775
TSALALLGKP	10	Unmodified	_TSALALLGKP_					0	0	0			REV__ENST00000404251.1_1_7:72856149-72856371:-|nuORF	REV__ENST00000404251.1_1_7:72856149-72856371:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.800537109375	2	485.800217	969.585882	0.21844	0.00010612	0.16951	8.2348E-05	0.38795	0.00018847	485.80030114811484	81.039	1.1409	81.039	80.513	81.653	0					92	51	2	0	0	0	0.14021	1	20960	20960		39.95	0	1	227560	+		49238	20726	28282	28283	60130	60130					0.09987217482728283
TSALASPRG	9	Unmodified	_TSALASPRG_					0	0	0		ENST00000359928.8_1_15:74315686-74326819:+|nuORF	ENST00000359928.8_1_15:74315686-74326819:+|nuORF	ENST00000359928.8_1_15:74315686-74326819:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8881530761719	2	430.235242	858.45593	-0.022448	-9.658E-06	0.31832	0.00013695	0.29587	0.00012729	430.2352992739513	20.441	0.73455	20.441	20.207	20.942	0					43	25	2	0	0	0	0.16284	1	2591	2591		37.974	1.847	1	304340			49239	9671	28283	28284	60131	60131					0.021040412035858935
TSALASPRG	9	Unmodified	_TSALASPRG_					0	0	0		ENST00000359928.8_1_15:74315686-74326819:+|nuORF	ENST00000359928.8_1_15:74315686-74326819:+|nuORF	ENST00000359928.8_1_15:74315686-74326819:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	430.235242	858.45593	0.21308	9.1673E-05	-0.31618	-0.00013603	-0.1031	-4.4359E-05	430.23522502963493	20.657	0.84608	20.547	20.188	21.034	-0.11003	0.064581	-0.00044097	NaN	37.974	51	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304470			49240	9671	28283	28284							0.021040412035858935
TSALASPRG	9	Unmodified	_TSALASPRG_					0	0	0		ENST00000359928.8_1_15:74315686-74326819:+|nuORF	ENST00000359928.8_1_15:74315686-74326819:+|nuORF	ENST00000359928.8_1_15:74315686-74326819:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	430.235242	858.45593	0.22219	9.5593E-05	0.12834	5.5216E-05	0.35053	0.00015081	430.2352008305578	20.512	0.92884	20.459	20.275	21.204	-0.05291	-0.023215	-5.8477E-05	NaN	37.974	47	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311070			49241	9671	28283	28284							0.021040412035858935
TSALILLAPA	10	Unmodified	_TSALILLAPA_					0	0	0			REV__ENSG00000166368|ENST00000299459|OR2D2	REV__ENSG00000166368|ENST00000299459|OR2D2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2922058105469	2	485.302593	968.590633	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.673	1	82.652	82.152	83.152	-0.020584								0	0	0	0.33661	1	21577	21577		20.454	0	1		+		49242	17314	28284	28285	60132	60132					0.10508101625475774
TSALLPAIAN	10	Unmodified	_TSALLPAIAN_					0	0	0		nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1	nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1	nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	485.782025	969.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.711	1	77.679	77.179	78.179	-0.031334								0	0	0	0.32028	1	20056	20056		25.399	2.663	1				49243	12827	28285	28286	60133	60133					0.0635034058598194
TSALLPAIAN	10	Unmodified	_TSALLPAIAN_					0	0	0		nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1	nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1	nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80029296875	2	485.782025	969.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.584	1	78.553	78.053	79.053	-0.030434								0	0	0	0.32028	1	20323	20323		25.399	2.663	1				49244	12827	28285	28286	60134	60134					0.0635034058598194
TSALLVCHK	9	Unmodified	_TSALLVCHK_					0	0	0			REV__ENST00000430580.6_1_1:16935030-16935177:-|nuORF	REV__ENST00000430580.6_1_1:16935030-16935177:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.267822265625	2	486.27077	970.526987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.439	1	88.528	88.028	89.028	0.089195								0	0	0	0.21726	1	23356	23356		16.942	6.1184	1		+		49245	20948	28286	28287	60135	60135					0.0405441791673411
TSALLVCHK	9	Unmodified	_TSALLVCHK_					0	0	0			REV__ENST00000430580.6_1_1:16935030-16935177:-|nuORF	REV__ENST00000430580.6_1_1:16935030-16935177:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.26812744140625	2	486.27077	970.526987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.599	1	88.688	88.188	89.188	0.089195								0	0	0	0.19804	1	23403	23403		23.148	5.0021	1		+		49246	20948	28286	28287	60136	60136					0.0405441791673411
TSALLVCHK	9	Unmodified	_TSALLVCHK_					0	0	0			REV__ENST00000430580.6_1_1:16935030-16935177:-|nuORF	REV__ENST00000430580.6_1_1:16935030-16935177:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.26873779296875	2	486.27077	970.526987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.48	1	88.477	87.977	88.977	-0.0028381								0	0	0	0.19804	1	23362	23362		23.148	8.5667	1		+		49247	20948	28286	28287	60137	60137					0.0405441791673411
TSALLVCHK	9	Unmodified	_TSALLVCHK_					0	0	0			REV__ENST00000430580.6_1_1:16935030-16935177:-|nuORF	REV__ENST00000430580.6_1_1:16935030-16935177:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2679443359375	2	486.27077	970.526987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.62	1	88.617	88.117	89.117	-0.0028381								0	0	0	0.19804	1	23405	23405		23.148	8.5667	1		+		49248	20948	28286	28287	60138	60138					0.0405441791673411
TSALLVCHK	9	Unmodified	_TSALLVCHK_					0	0	0			REV__ENST00000430580.6_1_1:16935030-16935177:-|nuORF	REV__ENST00000430580.6_1_1:16935030-16935177:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2682800292969	2	486.27077	970.526987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.643	1	88.64	88.14	89.14	-0.0028381								0	0	0	0.21726	1	23412	23412		16.942	7.5949	1		+		49249	20948	28286	28287	60139	60139					0.0405441791673411
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80059814453125	2	485.800217	969.585882	0.20037	9.734E-05	-0.10387	-5.0462E-05	0.096496	4.6878E-05	485.8010064681291	41.673	8.1454	41.673	40.96	49.105	0					650	301	6	0	0	0	1.7377E-16	36	8893	8853;8893;8936;8976;9016;9063;9103;9149;9191;9241;9289;9333;9385;9433;9476;9516;9716;9766;9816;9865;9919;9968;10019;10231;10277;10329;10585;10694;10744;10797;10847;10853;10907;10997;11053;11120		206.75	131.82	1	1549999999.9999998			49250	4787	28287	28288	60140;60141;60142;60143;60144;60145;60146;60147;60148;60149;60150;60151;60152;60153;60154;60155;60156;60157;60158;60159;60160;60161;60162;60163;60164;60165;60166;60167;60168;60169;60170;60171;60172;60173;60174;60175	60141					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001708984375	2	485.800217	969.585882	0.29743	0.00014449	0.33209	0.00016133	0.62952	0.00030582	485.800346843098	49.756	1.1435	49.756	48.995	50.138	0					77	41	2	0	0	0	0.014206	1	11355	11355		72.968	33.018	1	4058300			49251	4787	28287	28288	60176	60176					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8006591796875	2	485.800217	969.585882	0.57038	0.00027709	-0.15978	-7.7622E-05	0.41059	0.00019947	485.80012696758996	50.415	1.4586	50.415	50.077	51.536	0					181	53	6	0	0	0	0.015924	1	11831	11831		70.332	30.382	1	5411200			49252	4787	28287	28288	60177	60177					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001708984375	2	485.800217	969.585882	0.37107	0.00018026	-0.23484	-0.00011408	0.13623	6.6181E-05	485.8000570857257	51.846	4.4994	51.846	51.382	55.882	0					265	165	2	0	0	0	0.0054984	5	12329	12329;12447;12566;12814;12859		86.332	49.514	1	1231900			49253	4787	28287	28288	60178;60179;60180;60181;60182	60178					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.800217	969.585882	0.32832	0.0001595	-0.26062	-0.00012661	0.0677	3.2888E-05	485.80005622319413	55.675	5.5969	55.675	54.708	60.305	0					352	202	2	0	0	0	0.0019475	8	14244	13874;13922;14032;14244;14476;14548;14611;14663		110.67	62.926	1	832840			49254	4787	28287	28288	60183;60184;60185;60186;60187;60188;60189;60190	60186					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80010986328125	2	485.800217	969.585882	0.42351	0.00020574	-0.32504	-0.0001579	0.098466	4.7835E-05	485.80001467227913	60.944	0.84182	60.944	60.15	60.992	0					51	30	2	0	0	0	0.079752	2	14808	14808;14921		41.84	1.8899	1	1028700			49255	4787	28287	28288	60191;60192	60191					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001708984375	2	485.800217	969.585882	0.20296	9.8599E-05	-0.041062	-1.9948E-05	0.1619	7.8651E-05	485.80017784793364	61.377	2.3486	61.377	60.992	63.34	0					153	87	2	0	0	0	0.010453	2	15104	14996;15104		78.728	42.601	1	1123800			49256	4787	28287	28288	60193;60194	60194					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8003845214844	2	485.800217	969.585882	0.24377	0.00011842	0.096891	4.707E-05	0.34066	0.00016549	485.8002001880254	72.295	3.0926	72.295	71.098	74.191	0					173	110	2	0	0	0	0.023967	3	18529	18529;18656;18705		62.573	20.733	1	603010			49257	4787	28287	28288	60195;60196;60197	60195					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8011779785156	2	485.800217	969.585882	0.21844	0.00010612	0.16951	8.2348E-05	0.38795	0.00018847	485.80030114811484	81.039	1.1409	81.039	80.513	81.653	0					92	51	2	0	0	0	0.041175	3	20993	20993;21134;21179		56.177	14.337	1	227560			49258	4787	28287	28288	60198;60199;60200	60198					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.800217	969.585882	0.28495	0.00013843	0.99241	0.00048211	1.2774	0.00062054	485.8005522662736	82.292	1.2527	82.292	81.455	82.708	0					83	47	2	0	0	0	0.051692	2	21331	21227;21331		52.268	16.141	1	342420			49259	4787	28287	28288	60201;60202	60202					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001403808594	2	485.800217	969.585882	0.45445	0.00022077	-0.064819	-3.1489E-05	0.38963	0.00018928	485.8002240563065	85.126	1.9958	85.126	84.256	86.251	0					110	75	2	0	0	0	0.057976	1	22450	22450		49.933	13.806	1	262240			49260	4787	28287	28288	60203	60203					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80133056640625	2	485.800217	969.585882	0.34457	0.00016739	0.46991	0.00022828	0.81447	0.00039567	485.80041654184794	89.14	1.3417	89.14	88.514	89.856	0					112	73	2	0	0	0	0.051692	3	23590	23537;23590;23653		52.268	16.141	1	193450			49261	4787	28287	28288	60204;60205;60206	60205					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80023193359375	2	485.800217	969.585882	-0.10342	-5.024E-05	1.6365	0.00079502	1.5331	0.00074478	485.80029216840467	98.165	0.467	98.165	97.794	98.261	0					75	53	2	0	0	0	0.15219	1	26228	26228		30.637	7.9003	1	149500			49262	4787	28287	28288	60207	60207					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002624511719	2	485.800217	969.585882	-0.16025	-7.7849E-05	2.8744	0.0013964	2.7142	0.0013185	485.8003399937869	101.66	0.69766	101.66	101.42	102.12	0					167	93	2	0	0	0	0.18803	1	27053	27053		25.399	2.663	1	122250			49263	4787	28287	28288	60208	60208					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.792	1	63.792	63.292	64.292	0								0	0	0	0.031491	1	15820	15820		66.457	26.507	1				49264	4787	28287	28288	60209	60209					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8004455566406	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.946	1	63.946	63.446	64.446	0								0	0	0	0.013058	1	15867	15867		75.761	35.811	1				49265	4787	28287	28288	60210	60210					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.115	1	64.115	63.615	64.615	0								0	0	0	0.039802	1	15919	15919		63.961	24.011	1				49266	4787	28287	28288	60211	60211					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8000183105469	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.298	1	64.298	63.798	64.798	0								0	0	0	0.060574	1	15975	15975		57.722	17.772	1				49267	4787	28287	28288	60212	60212					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.458	1	64.458	63.958	64.958	0								0	0	0	0.022673	1	16024	16024		69.105	32.978	1				49268	4787	28287	28288	60213	60213					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.626	1	64.626	64.126	65.126	0								0	0	0	0.065718	1	16075	16075		56.177	20.05	1				49269	4787	28287	28288	60214	60214					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.353	1	65.353	64.853	65.853	0								0	0	0	0.035558	1	16299	16299		65.235	29.108	1				49270	4787	28287	28288	60215	60215					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.852	1	65.852	65.352	66.352	0								0	0	0	0.052743	1	16450	16450		60.074	18.234	1				49271	4787	28287	28288	60216	60216					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8000793457031	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.635	1	66.635	66.135	67.135	0								0	0	0	0.013058	1	16689	16689		75.761	24.131	1				49272	4787	28287	28288	60217	60217					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80035400390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.033	1	67.033	66.533	67.533	0								0	0	0	0.052743	1	16811	16811		60.074	18.234	1				49273	4787	28287	28288	60218	60218					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7998352050781	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.251	1	67.251	66.751	67.751	0								0	0	0	0.039802	1	16877	16877		63.961	18.261	1				49274	4787	28287	28288	60219	60219					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8004150390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.43	1	67.43	66.93	67.93	0								0	0	0	0.044423	1	16932	16932		62.573	20.733	1				49275	4787	28287	28288	60220	60220					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80023193359375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.6	1	67.6	67.1	68.1	0								0	0	0	0.015595	1	16984	16984		71.922	30.083	1				49276	4787	28287	28288	60221	60221					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.164	1	68.164	67.664	68.664	0								0	0	0	0.022673	1	17156	17156		69.105	32.978	1				49277	4787	28287	28288	60222	60222					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.79986572265625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.626	1	69.626	69.126	70.126	0								0	0	0	0.035558	1	17605	17605		65.235	23.395	1				49278	4787	28287	28288	60223	60223					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8003845214844	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.989	1	77.989	77.489	78.489	0								0	0	0	0.073524	1	20156	20156		53.833	13.883	1				49279	4787	28287	28288	60224	60224					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8005065917969	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.371	1	78.371	77.871	78.871	0								0	0	0	0.086509	1	20273	20273		49.933	13.806	1				49280	4787	28287	28288	60225	60225					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80035400390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.54	1	78.54	78.04	79.04	0								0	0	0	0.044423	1	20325	20325		62.573	26.446	1				49281	4787	28287	28288	60226	60226					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8003845214844	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.707	1	78.707	78.207	79.207	0								0	0	0	0.035558	1	20376	20376		65.235	29.108	1				49282	4787	28287	28288	60227	60227					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.783	1	79.783	79.283	80.283	0								0	0	0	0.12743	1	20705	20705		39.957	3.8303	1				49283	4787	28287	28288	60228	60228					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7998046875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.046	1	80.046	79.546	80.546	0								0	0	0	0.11063	1	20786	20786		43.858	7.7313	1				49284	4787	28287	28288	60229	60229					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7999572753906	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.553	1	80.553	80.053	81.053	0								0	0	0	0.11932	1	20942	20942		41.84	0	1				49285	4787	28287	28288	60230	60230					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8003234863281	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.218	1	88.218	87.718	88.718	0								0	0	0	0.14393	1	23294	23294		36.127	7.0454	1				49286	4787	28287	28288	60231	60231					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80023193359375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.268	1	88.268	87.768	88.768	0								0	0	0	0.11932	1	23310	23310		41.84	12.758	1				49287	4787	28287	28288	60232	60232					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80035400390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.38	1	88.38	87.88	88.88	0								0	0	0	0.13597	1	23344	23344		37.974	8.8924	1				49288	4787	28287	28288	60233	60233					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8004150390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.772	1	95.772	95.272	96.272	0								0	0	0	0.19013	1	25571	25571		25.399	7.253	1				49289	4787	28287	28288	60234	60234					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.947	1	95.947	95.447	96.447	0								0	0	0	0.14393	1	25622	25622		36.127	7.0454	1				49290	4787	28287	28288	60235	60235					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80035400390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.297	1	96.297	95.797	96.797	0								0	0	0	0.16039	1	25725	25725		32.305	3.2239	1				49291	4787	28287	28288	60236	60236					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.528	1	96.528	96.028	97.028	0								0	0	0	0.16039	1	25794	25794		32.305	3.2239	1				49292	4787	28287	28288	60237	60237					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.800537109375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.554	1	96.554	96.054	97.054	0								0	0	0	0.11063	1	25802	25802		43.858	7.7313	1				49293	4787	28287	28288	60238	60238					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.805	1	96.805	96.305	97.305	0								0	0	0	0.19013	1	25876	25876		25.399	2.663	1				49294	4787	28287	28288	60239	60239					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.878	1	96.878	96.378	97.378	0								0	0	0	0.16039	1	25896	25896		32.305	3.2239	1				49295	4787	28287	28288	60240	60240					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8003845214844	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.467	1	99.467	98.967	99.967	0								0	0	0	0.11063	1	26608	26608		43.858	7.7313	1				49296	4787	28287	28288	60241	60241					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.61	1	111.61	111.11	112.11	0								0	0	0	0.17427	1	29022	29022		29.082	6.3453	1				49297	4787	28287	28288	60242	60242					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001403808594	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.29	1	112.29	111.79	112.79	0								0	0	0	0.21009	1	29193	29193		19.257	2.1441	1				49298	4787	28287	28288	60243	60243					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.43	1	112.43	111.93	112.93	0								0	0	0	0.19013	1	29225	29225		25.399	2.663	1				49299	4787	28287	28288	60244	60244					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.6	1	112.6	112.1	113.1	0								0	0	0	0.19013	1	29262	29262		25.399	2.663	1				49300	4787	28287	28288	60245	60245					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8005676269531	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.38	1	113.38	112.88	113.88	0								0	0	0	0.19013	1	29448	29448		25.399	2.663	1				49301	4787	28287	28288	60246	60246					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8009033203125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.48	1	113.48	112.98	113.98	0								0	0	0	0.19013	1	29474	29474		25.399	2.663	1				49302	4787	28287	28288	60247	60247					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8004150390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.72	1	113.72	113.22	114.22	0								0	0	0	0.21009	1	29531	29531		19.257	2.1441	1				49303	4787	28287	28288	60248	60248					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.84	1	113.84	113.34	114.34	0								0	0	0	0.21009	1	29559	29559		19.257	2.1441	1				49304	4787	28287	28288	60249	60249					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.97	1	113.97	113.47	114.47	0								0	0	0	0.21009	1	29585	29585		19.257	2.1441	1				49305	4787	28287	28288	60250	60250					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.800048828125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.16	1	114.16	113.66	114.66	0								0	0	0	0.19013	1	29626	29626		25.399	2.663	1				49306	4787	28287	28288	60251	60251					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.41	1	114.41	113.91	114.91	0								0	0	0	0.2575	1	29684	29684		3.9444	0.66309	1				49307	4787	28287	28288	60252	60252					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8000183105469	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.56	1	114.56	114.06	115.06	0								0	0	0	0.19013	1	29717	29717		25.399	2.663	1				49308	4787	28287	28288	60253	60253					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.87	1	114.87	114.37	115.37	0								0	0	0	0.20639	1	29786	29786		20.454	2.3073	1				49309	4787	28287	28288	60254	60254					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001403808594	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.1	1	115.1	114.6	115.6	0								0	0	0	0.21009	1	29838	29838		19.257	2.1441	1				49310	4787	28287	28288	60255	60255					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8000793457031	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.49	1	115.49	114.99	115.99	0								0	0	0	0.2362	1	29929	29929		10.824	1.4408	1				49311	4787	28287	28288	60256	60256					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8004150390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.69	1	115.69	115.19	116.19	0								0	0	0	0.19013	1	29975	29975		25.399	2.663	1				49312	4787	28287	28288	60257	60257					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7998352050781	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.79	1	115.79	115.29	116.29	0								0	0	0	0.19013	1	29998	29998		25.399	2.663	1				49313	4787	28287	28288	60258	60258					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7998962402344	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.45	1	116.45	115.95	116.95	0								0	0	0	0.16757	1	30149	30149		30.637	7.9003	1				49314	4787	28287	28288	60259	60259					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80035400390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.66	1	116.66	116.16	117.16	0								0	0	0	0.23852	1	30193	30193		10.074	1.3285	1				49315	4787	28287	28288	60260	60260					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001403808594	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.81	1	116.81	116.31	117.31	0								0	0	0	0.2362	1	30228	30228		10.824	1.4408	1				49316	4787	28287	28288	60261	60261					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001403808594	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.95	1	116.95	116.45	117.45	0								0	0	0	0.19013	1	30264	30264		25.399	2.663	1				49317	4787	28287	28288	60262	60262					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8005676269531	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.03	1	117.03	116.53	117.53	0								0	0	0	0.23852	1	30281	30281		10.074	1.3285	1				49318	4787	28287	28288	60263	60263					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.15	1	117.15	116.65	117.65	0								0	0	0	0.19013	1	30307	30307		25.399	2.663	1				49319	4787	28287	28288	60264	60264					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7995300292969	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.37	1	117.37	116.87	117.87	0								0	0	0	0.19013	1	30355	30355		25.399	2.663	1				49320	4787	28287	28288	60265	60265					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7997131347656	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.49	1	117.49	116.99	117.99	0								0	0	0	0.22377	1	30385	30385		14.838	1.7958	1				49321	4787	28287	28288	60266	60266					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.79998779296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.73	1	117.73	117.23	118.23	0								0	0	0	0.2489	1	30435	30435		6.7232	0.99131	1				49322	4787	28287	28288	60267	60267					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.87	1	117.87	117.37	118.37	0								0	0	0	0.22666	1	30468	30468		13.906	1.6654	1				49323	4787	28287	28288	60268	60268					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.2	1	118.2	117.7	118.7	0								0	0	0	0.2362	1	30542	30542		10.824	1.4408	1				49324	4787	28287	28288	60269	60269					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.36	1	118.36	117.86	118.86	0								0	0	0	0.22377	1	30578	30578		14.838	1.7958	1				49325	4787	28287	28288	60270	60270					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.49	1	118.49	117.99	118.99	0								0	0	0	0.22377	1	30605	30605		14.838	1.7958	1				49326	4787	28287	28288	60271	60271					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.800048828125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.5	1	118.5	118	119	0								0	0	0	0.22377	1	30608	30608		14.838	1.7958	1				49327	4787	28287	28288	60272	60272					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7998046875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.64	1	118.64	118.14	119.14	0								0	0	0	0.22377	1	30639	30639		14.838	1.7958	1				49328	4787	28287	28288	60273	60273					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.8	1	118.8	118.3	119.3	0								0	0	0	0.19013	1	30678	30678		25.399	2.663	1				49329	4787	28287	28288	60274	60274					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8000793457031	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.97	1	118.97	118.47	119.47	0								0	0	0	0.22377	1	30715	30715		14.838	1.7958	1				49330	4787	28287	28288	60275	60275					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.1	1	119.1	118.6	119.6	0								0	0	0	0.21009	1	30745	30745		19.257	2.1441	1				49331	4787	28287	28288	60276	60276					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8009948730469	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.14	1	119.14	118.64	119.64	0								0	0	0	0.16039	1	30753	30753		32.305	3.2239	1				49332	4787	28287	28288	60277	60277					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001403808594	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.29	1	119.29	118.79	119.79	0								0	0	0	0.2489	1	30786	30786		6.7232	0.99131	1				49333	4787	28287	28288	60278	60278					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.42	1	119.42	118.92	119.92	0								0	0	0	0.23852	1	30814	30814		10.074	1.3285	1				49334	4787	28287	28288	60279	60279					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8000793457031	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.56	1	119.56	119.06	120.06	0								0	0	0	0.23852	1	30845	30845		10.074	1.3285	1				49335	4787	28287	28288	60280	60280					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.72	1	119.72	119.22	120.22	0								0	0	0	0.19013	1	30877	30877		25.399	2.663	1				49336	4787	28287	28288	60281	60281					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.85	1	119.85	119.35	120.35	0								0	0	0	0.21009	1	30904	30904		19.257	2.1441	1				49337	4787	28287	28288	60282	60282					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.79998779296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120	1	120	119.5	120.5	-0.0017853								0	0	0	0.19013	1	30940	30940		25.399	2.663	1				49338	4787	28287	28288	60283	60283					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80023193359375	2	485.800217	969.585882	0.42194	0.00020498	-0.092108	-4.4746E-05	0.32983	0.00016023	485.8000481189301	86.624	1.2879	86.624	86.175	87.463	0					80	53	2	0	0	0	0.13898	1	22787	22787		36.127	1.7253	1	255530			49339	4787	28287	28288	60284	60284					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.2918395996094	2	485.800217	969.585882	0.50286	0.00024429	0.85661	0.00041614	1.3595	0.00066043	485.80041049509794	83.312	1.4116	83.312	82.844	84.256	0					91	55	2	0	0	0	0.11397	1	21744	21744		49.933	13.806	1	224320			49340	4787	28287	28288	60285	60285					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8006286621094	2	485.800217	969.585882	0.23441	0.00011388	-0.024353	-1.1831E-05	0.21005	0.00010204	485.80107403560237	41.56	6.2849	41.65	41.079	47.364	0.090248					569	234	6	0	0	0	1.7377E-16	30	8897	8855;8897;8941;8982;9022;9071;9112;9153;9198;9244;9285;9334;9377;9426;9476;9493;9636;9689;9737;9782;9832;9881;9932;10115;10160;10205;10257;10554;10669;10719		206.75	131.82	1	1582499999.9999998			49341	4787	28287	28288	60286;60287;60288;60289;60290;60291;60292;60293;60294;60295;60296;60297;60298;60299;60300;60301;60302;60303;60304;60305;60306;60307;60308;60309;60310;60311;60312;60313;60314;60315	60287					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.800537109375	2	485.800217	969.585882	0.53749	0.00026111	-0.30528	-0.0001483	0.23221	0.00011281	485.8000192074532	47.902	1.9195	47.95	47.321	49.241	0.047523					99	70	2	0	0	0	0.00045155	9	10931	10793;10845;10851;10931;10981;11029;11080;11128;11177		129.77	78.119	1	2728600			49342	4787	28287	28288	60316;60317;60318;60319;60320;60321;60322;60323;60324	60319					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80029296875	2	485.800217	969.585882	0.27642	0.00013428	0.37512	0.00018223	0.65154	0.00031652	485.80035713442777	49.73	0.9497	49.775	49.21	50.16	0.044891					68	35	2	0	0	0	0.0054984	2	11334	11334;11382		86.332	42.559	1	4276100			49343	4787	28287	28288	60325;60326	60325					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80029296875	2	485.800217	969.585882	0.16229	7.8842E-05	0.058541	2.8439E-05	0.22083	0.00010728	485.80022813834887	61.054	2.5594	61.15	60.67	63.229	0.096985					156	93	2	0	0	0	0.0083926	4	15092	14913;14963;15031;15092		81.89	45.763	1	1596700			49344	4787	28287	28288	60327;60328;60329;60330	60330					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8003845214844	2	485.800217	969.585882	0.33439	0.00016245	-0.40206	-0.00019532	-0.067661	-3.287E-05	485.8001284183311	79.562	5.9065	79.623	76.297	82.203	0.061417					336	238	2	0	0	0	0.041175	5	21120	20245;20728;20944;21120;21166		56.177	20.05	1	391350			49345	4787	28287	28288	60331;60332;60333;60334;60335	60334					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8004455566406	2	485.800217	969.585882	0.42096	0.0002045	-0.058259	-2.8302E-05	0.3627	0.0001762	485.80021083568704	84.815	2.791	84.896	83.957	86.748	0.080887					153	109	2	0	0	0	0.057976	1	22580	22580		49.933	13.806	1	355210			49346	4787	28287	28288	60336	60336					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8006896972656	2	485.800217	969.585882	0.31512	0.00015309	0.079634	3.8686E-05	0.39476	0.00019177	485.8002620605005	87.77	2.4103	87.859	86.756	89.166	0.089203					170	112	2	0	0	0	0.057976	9	23180	22890;23129;23180;23224;23295;23329;23474;23498;23507		49.933	13.806	1	250290			49347	4787	28287	28288	60337;60338;60339;60340;60341;60342;60343;60344;60345	60339					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8004455566406	2	485.800217	969.585882	0.11508	5.5906E-05	0.80583	0.00039147	0.92091	0.00044738	485.80027370182773	96.007	1.3291	96.085	95.752	97.081	0.077408					172	123	2	0	0	0	0.07432	6	25604	25604;25771;25782;25820;25842;25874		43.858	8.8924	1	221280			49348	4787	28287	28288	60346;60347;60348;60349;60350;60351	60346					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002014160156	2	485.800217	969.585882	0.085015	4.13E-05	0.84153	0.00040881	0.92654	0.00045011	485.80021712060284	97.182	0.7085	97.252	97.055	97.763	0.070465					122	75	2	0	0	0	0.11461	1	26007	26007		36.127	7.0454	1	163440			49349	4787	28287	28288	60352	60352					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.472	1	52.523	52.023	53.023	0.050575								0	0	0	0.018587	1	12320	12320		70.332	30.382	1				49350	4787	28287	28288	60353	60353					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8004455566406	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.833	1	52.884	52.384	53.384	0.050575								0	0	0	0.0040423	1	12431	12431		89.401	49.451	1				49351	4787	28287	28288	60354	60354					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.226	1	53.283	52.783	53.783	0.056255								0	0	0	0.031491	1	12551	12551		66.457	30.33	1				49352	4787	28287	28288	60355	60355					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.79998779296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.978	1	54.034	53.534	54.534	0.056255								0	0	0	0.014903	1	12785	12785		72.968	33.018	1				49353	4787	28287	28288	60356	60356					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80047607421875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.188	1	54.251	53.751	54.751	0.063202								0	0	0	0.0085839	1	12850	12850		82.529	46.402	1				49354	4787	28287	28288	60357	60357					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80023193359375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.346	1	54.409	53.909	54.909	0.063202								0	0	0	0.011096	1	12899	12899		78.728	48.092	1				49355	4787	28287	28288	60358	60358					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.762	1	57.847	57.347	58.347	0.085621								0	0	0	0.010523	1	13958	13958		79.596	39.647	1				49356	4787	28287	28288	60359	60359					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001403808594	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.918	1	58.003	57.503	58.503	0.085621								0	0	0	0.0085839	1	14007	14007		82.529	34.781	1				49357	4787	28287	28288	60360	60360					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80035400390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.473	1	58.565	58.065	59.065	0.091301								0	0	0	0.006527	1	14175	14175		85.642	43.802	1				49358	4787	28287	28288	60361	60361					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.59	1	58.682	58.182	59.182	0.091301								0	0	0	0.0018926	1	14210	14210		92.653	44.905	1				49359	4787	28287	28288	60362	60362					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8003845214844	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.346	1	59.437	58.937	59.937	0.091301								0	0	0	0.00062564	1	14439	14439		99.755	59.806	1				49360	4787	28287	28288	60363	60363					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80047607421875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.372	1	59.463	58.963	59.963	0.091301								0	0	0	0.011096	1	14447	14447		78.728	42.601	1				49361	4787	28287	28288	60364	60364					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.538	1	59.633	59.133	60.133	0.095093								0	0	0	0.00075361	1	14498	14498		96.111	59.984	1				49362	4787	28287	28288	60365	60365					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.765	1	59.86	59.36	60.36	0.095093								0	0	0	0.022673	1	14568	14568		69.105	32.978	1				49363	4787	28287	28288	60366	60366					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7997131347656	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.932	1	60.027	59.527	60.527	0.095093								0	0	0	0.093871	1	14618	14618		47.749	11.622	1				49364	4787	28287	28288	60367	60367					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.79998779296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.079	1	60.175	59.675	60.675	0.095093								0	0	0	0.022673	1	14664	14664		69.105	32.978	1				49365	4787	28287	28288	60368	60368					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.388	1	60.483	59.983	60.983	0.095093								0	0	0	0.086509	1	14760	14760		49.933	13.806	1				49366	4787	28287	28288	60369	60369					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.833	1	63.925	63.425	64.425	0.09288								0	0	0	0.022673	1	15825	15825		69.105	32.978	1				49367	4787	28287	28288	60370	60370					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.999	1	64.092	63.592	64.592	0.09288								0	0	0	0.022673	1	15876	15876		69.105	32.978	1				49368	4787	28287	28288	60371	60371					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.213	1	64.306	63.806	64.806	0.09288								0	0	0	0.035558	1	15942	15942		65.235	29.108	1				49369	4787	28287	28288	60372	60372					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.383	1	64.475	63.975	64.975	0.09288								0	0	0	0.00075361	1	15993	15993		96.111	58.137	1				49370	4787	28287	28288	60373	60373					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80035400390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.546	1	64.639	64.139	65.139	0.09288								0	0	0	0.00075361	1	16043	16043		96.111	58.137	1				49371	4787	28287	28288	60374	60374					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.24	1	65.329	64.829	65.829	0.088882								0	0	0	0.044423	1	16255	16255		62.573	26.446	1				49372	4787	28287	28288	60375	60375					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8004455566406	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.436	1	65.525	65.025	66.025	0.088882								0	0	0	0.011096	1	16315	16315		78.728	30.979	1				49373	4787	28287	28288	60376	60376					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8003845214844	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.649	1	65.738	65.238	66.238	0.088882								0	0	0	0.052743	1	16380	16380		60.074	23.947	1				49374	4787	28287	28288	60377	60377					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.816	1	65.905	65.405	66.405	0.088882								0	0	0	0.093871	1	16431	16431		47.749	0	1				49375	4787	28287	28288	60378	60378					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001403808594	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.491	1	66.575	66.075	67.075	0.083832								0	0	0	0.044423	1	16638	16638		62.573	14.824	1				49376	4787	28287	28288	60379	60379					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.875	1	66.959	66.459	67.459	0.083832								0	0	0	0.065718	1	16754	16754		56.177	14.337	1				49377	4787	28287	28288	60380	60380					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7999572753906	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.108	1	67.186	66.686	67.686	0.078041								0	0	0	0.014903	1	16825	16825		72.968	27.268	1				49378	4787	28287	28288	60381	60381					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001403808594	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.281	1	67.359	66.859	67.859	0.078041								0	0	0	0.010523	1	16878	16878		79.596	33.897	1				49379	4787	28287	28288	60382	60382					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8005065917969	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.437	1	67.515	67.015	68.015	0.078041								0	0	0	0.022673	1	16926	16926		69.105	27.265	1				49380	4787	28287	28288	60383	60383					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.904	1	67.982	67.482	68.482	0.078041								0	0	0	0.073524	1	17068	17068		53.833	17.706	1				49381	4787	28287	28288	60384	60384					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.800537109375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.15	1	68.223	67.723	68.723	0.072731								0	0	0	0.039802	1	17146	17146		63.961	25.785	1				49382	4787	28287	28288	60385	60385					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.149	1	73.203	72.703	73.703	0.053833								0	0	0	0.035558	1	18673	18673		65.235	17.486	1				49383	4787	28287	28288	60386	60386					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.801025390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.059	1	89.15	88.65	89.65	0.090569								0	0	0	0.14393	1	23544	23544		36.127	7.0454	1				49384	4787	28287	28288	60387	60387					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8005676269531	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.163	1	89.254	88.754	89.754	0.090569								0	0	0	0.10131	1	23576	23576		46.021	9.8939	1				49385	4787	28287	28288	60388	60388					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8009338378906	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.91	1	111.89	111.39	112.39	-0.015625								0	0	0	0.19013	1	29114	29114		25.399	2.663	1				49386	4787	28287	28288	60389	60389					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80023193359375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.43	1	112.41	111.91	112.91	-0.015625								0	0	0	0.19013	1	29244	29244		25.399	2.663	1				49387	4787	28287	28288	60390	60390					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.79986572265625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.64	1	112.62	112.12	113.12	-0.015625								0	0	0	0.21009	1	29295	29295		19.257	2.1441	1				49388	4787	28287	28288	60391	60391					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8000183105469	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.92	1	112.9	112.4	113.4	-0.017303								0	0	0	0.19013	1	29363	29363		25.399	2.663	1				49389	4787	28287	28288	60392	60392					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.33	1	113.31	112.81	113.81	-0.017303								0	0	0	0.21009	1	29463	29463		19.257	2.1441	1				49390	4787	28287	28288	60393	60393					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.800537109375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.49	1	113.48	112.98	113.98	-0.017303								0	0	0	0.19013	1	29500	29500		25.399	2.663	1				49391	4787	28287	28288	60394	60394					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7999267578125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.75	1	113.73	113.23	114.23	-0.017303								0	0	0	0.21009	1	29560	29560		19.257	2.1441	1				49392	4787	28287	28288	60395	60395					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.79998779296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.88	1	113.86	113.36	114.36	-0.019096								0	0	0	0.22377	1	29589	29589		14.838	1.7958	1				49393	4787	28287	28288	60396	60396					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.14	1	114.12	113.62	114.62	-0.019096								0	0	0	0.20639	1	29651	29651		20.454	2.3073	1				49394	4787	28287	28288	60397	60397					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001403808594	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.29	1	114.27	113.77	114.77	-0.019096								0	0	0	0.22377	1	29685	29685		14.838	1.7958	1				49395	4787	28287	28288	60398	60398					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.800048828125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.44	1	114.42	113.92	114.92	-0.019096								0	0	0	0.21009	1	29713	29713		19.257	2.1441	1				49396	4787	28287	28288	60399	60399					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001403808594	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.58	1	114.56	114.06	115.06	-0.019096								0	0	0	0.2489	1	29743	29743		6.7232	0.99131	1				49397	4787	28287	28288	60400	60400					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7998046875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.71	1	114.69	114.19	115.19	-0.019096								0	0	0	0.22377	1	29771	29771		14.838	1.7958	1				49398	4787	28287	28288	60401	60401					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7999267578125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.89	1	114.87	114.37	115.37	-0.019096								0	0	0	0.16039	1	29811	29811		32.305	3.2239	1				49399	4787	28287	28288	60402	60402					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.92	1	114.9	114.4	115.4	-0.019096								0	0	0	0.2362	1	29816	29816		10.824	0	1				49400	4787	28287	28288	60403	60403					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.05	1	115.03	114.53	115.53	-0.020988								0	0	0	0.14393	1	29850	29850		36.127	7.0454	1				49401	4787	28287	28288	60404	60404					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7998046875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.17	1	115.15	114.65	115.65	-0.020988								0	0	0	0.16039	1	29873	29873		32.305	3.2239	1				49402	4787	28287	28288	60405	60405					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.3	1	115.28	114.78	115.78	-0.020988								0	0	0	0.22377	1	29906	29906		14.838	1.7958	1				49403	4787	28287	28288	60406	60406					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8003234863281	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.43	1	115.4	114.9	115.9	-0.020988								0	0	0	0.19013	1	29935	29935		25.399	2.663	1				49404	4787	28287	28288	60407	60407					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7999572753906	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.56	1	115.54	115.04	116.04	-0.020988								0	0	0	0.16039	1	29965	29965		32.305	3.2239	1				49405	4787	28287	28288	60408	60408					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80047607421875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.69	1	115.67	115.17	116.17	-0.020988								0	0	0	0.17427	1	29993	29993		29.082	6.3453	1				49406	4787	28287	28288	60409	60409					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.800537109375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.88	1	115.86	115.36	116.36	-0.020988								0	0	0	0.2489	1	30036	30036		6.7232	0.99131	1				49407	4787	28287	28288	60410	60410					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001403808594	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.92	1	115.9	115.4	116.4	-0.020988								0	0	0	0.19013	1	30044	30044		25.399	2.663	1				49408	4787	28287	28288	60411	60411					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.01	1	115.99	115.49	116.49	-0.020988								0	0	0	0.22377	1	30066	30066		14.838	1.7958	1				49409	4787	28287	28288	60412	60412					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.800537109375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.26	1	116.24	115.74	116.74	-0.022781								0	0	0	0.21009	1	30122	30122		19.257	2.1441	1				49410	4787	28287	28288	60413	60413					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8004150390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.42	1	116.39	115.89	116.89	-0.022781								0	0	0	0.16039	1	30159	30159		32.305	3.2239	1				49411	4787	28287	28288	60414	60414					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.56	1	116.54	116.04	117.04	-0.022781								0	0	0	0.22377	1	30192	30192		14.838	1.7958	1				49412	4787	28287	28288	60415	60415					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.84	1	116.82	116.32	117.32	-0.022781								0	0	0	0.2489	1	30258	30258		6.7232	0.99131	1				49413	4787	28287	28288	60416	60416					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8005065917969	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.95	1	116.93	116.43	117.43	-0.022781								0	0	0	0.21353	1	30285	30285		18.146	5.1039	1				49414	4787	28287	28288	60417	60417					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80035400390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.97	1	116.95	116.45	117.45	-0.022781								0	0	0	0.19932	1	30291	30291		22.736	5.6234	1				49415	4787	28287	28288	60418	60418					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.1	1	117.07	116.57	117.57	-0.022781								0	0	0	0.22377	1	30318	30318		14.838	1.7958	1				49416	4787	28287	28288	60419	60419					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.19	1	117.17	116.67	117.67	-0.024147								0	0	0	0.21009	1	30341	30341		19.257	2.1441	1				49417	4787	28287	28288	60420	60420					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.27	1	117.24	116.74	117.74	-0.024147								0	0	0	0.2362	1	30359	30359		10.824	1.4408	1				49418	4787	28287	28288	60421	60421					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.41	1	117.38	116.88	117.88	-0.024147								0	0	0	0.23852	1	30389	30389		10.074	1.3285	1				49419	4787	28287	28288	60422	60422					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001403808594	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.48	1	117.45	116.95	117.95	-0.024147								0	0	0	0.22377	1	30406	30406		14.838	1.7958	1				49420	4787	28287	28288	60423	60423					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.79974365234375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.58	1	117.56	117.06	118.06	-0.024147								0	0	0	0.20639	1	30428	30428		20.454	2.3073	1				49421	4787	28287	28288	60424	60424					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.87	1	117.84	117.34	118.34	-0.024147								0	0	0	0.17427	1	30493	30493		29.082	6.3453	1				49422	4787	28287	28288	60425	60425					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.800048828125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118	1	117.97	117.47	118.47	-0.024147								0	0	0	0.21353	1	30521	30521		18.146	1.0335	1				49423	4787	28287	28288	60426	60426					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8000793457031	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.24	1	118.22	117.72	118.72	-0.024147								0	0	0	0.16039	1	30573	30573		32.305	3.2239	1				49424	4787	28287	28288	60427	60427					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8000793457031	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.37	1	118.35	117.85	118.85	-0.024147								0	0	0	0.23852	1	30600	30600		10.074	1.3285	1				49425	4787	28287	28288	60428	60428					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.58	1	118.56	118.06	119.06	-0.024147								0	0	0	0.2505	1	30648	30648		6.2058	2.6093	1				49426	4787	28287	28288	60429	60429					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7999572753906	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.72	1	118.7	118.2	119.2	-0.024147								0	0	0	0.16039	1	30677	30677		32.305	3.2239	1				49427	4787	28287	28288	60430	60430					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7999267578125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.87	1	118.85	118.35	119.35	-0.024147								0	0	0	0.16039	1	30710	30710		32.305	3.2239	1				49428	4787	28287	28288	60431	60431					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7999267578125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.01	1	118.99	118.49	119.49	-0.024147								0	0	0	0.2575	1	30738	30738		3.9444	0.66309	1				49429	4787	28287	28288	60432	60432					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7996826171875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.03	1	119.01	118.51	119.51	-0.024147								0	0	0	0.2362	1	30744	30744		10.824	1.4408	1				49430	4787	28287	28288	60433	60433					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8003234863281	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.16	1	119.13	118.63	119.63	-0.024147								0	0	0	0.21009	1	30770	30770		19.257	2.1441	1				49431	4787	28287	28288	60434	60434					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7999267578125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.25	1	119.23	118.73	119.73	-0.024147								0	0	0	0.21009	1	30790	30790		19.257	2.1441	1				49432	4787	28287	28288	60435	60435					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.38	1	119.36	118.86	119.86	-0.024361								0	0	0	0.20639	1	30820	30820		20.454	2.3073	1				49433	4787	28287	28288	60436	60436					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.79986572265625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.39	1	119.37	118.87	119.87	-0.024361								0	0	0	0.23852	1	30822	30822		10.074	1.3285	1				49434	4787	28287	28288	60437	60437					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.54	1	119.51	119.01	120.01	-0.024361								0	0	0	0.21009	1	30858	30858		19.257	2.1441	1				49435	4787	28287	28288	60438	60438					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8013610839844	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.84	1	119.82	119.32	120.32	-0.024361								0	0	0	0.19013	1	30924	30924		25.399	2.663	1				49436	4787	28287	28288	60439	60439					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8000183105469	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.88	1	119.86	119.36	120.36	-0.024361								0	0	0	0.24715	1	30934	30934		7.2892	1.0834	1				49437	4787	28287	28288	60440	60440					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.7843322753906	2	485.800217	969.585882	0.21667	0.00010526	-0.060285	-2.9286E-05	0.15639	7.5972E-05	485.80011704361965	74.306	2.7344	74.358	73.553	76.288	0.052368					148	97	2	0	0	0	0.11397	1	19586	19586		49.933	20.851	1	604080			49438	4787	28287	28288	60441	60441					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.2921142578125	2	485.800217	969.585882	0.41227	0.00020028	0.99041	0.00048114	1.4027	0.00068142	485.80052004174445	83.468	1.105	83.545	82.848	83.953	0.077095					93	42	3	0	0	0	0.13898	1	21651	21651		36.127	7.0454	1	218970			49439	4787	28287	28288	60442	60442					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.2921142578125	2	485.800217	969.585882	0.23917	0.00011619	1.695	0.00082345	1.9342	0.00093964	485.8009118969878	82.342	0.69131	82.415	82.109	82.801	0.073097					50	27	3	0	0	0	0.17242	1	21555	21555		36.127	7.0454	1	298210			49440	4787	28287	28288	60443	60443					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2923583984375	2	485.800217	969.585882	0.54044	0.00026255	-0.26874	-0.00013055	0.2717	0.00013199	485.8009602270782	41.511	6.7053	41.607	40.803	47.508	0.096622					555	248	5	0	0	0	1.5552E-11	30	9467	8827;8868;8918;8961;9007;9054;9104;9153;9197;9239;9279;9322;9372;9420;9467;9618;9668;9719;9771;9819;9867;9908;10109;10156;10204;10256;10310;10565;10662;10714		198.25	126.33	1	1785199999.9999998			49441	4787	28287	28288	60444;60445;60446;60447;60448;60449;60450;60451;60452;60453;60454;60455;60456;60457;60458;60459;60460;60461;60462;60463;60464;60465;60466;60467;60468;60469;60470;60471;60472;60473	60458					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	485.800217	969.585882	0.46078	0.00022385	-0.17299	-8.4039E-05	0.28779	0.00013981	485.80003876121265	47.947	1.6287	47.99	47.455	49.084	0.04332					117	60	3	0	0	0	9.2305E-05	9	11060	10794;10839;10852;10901;10955;11003;11060;11106;11153		142.08	85.903	1	1892500			49442	4787	28287	28288	60474;60475;60476;60477;60478;60479;60480;60481;60482	60480					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	485.800217	969.585882	0.27266	0.00013246	0.36835	0.00017894	0.64101	0.0003114	485.80035687869616	49.694	1.209	49.714	48.943	50.152	0.020691					81	43	2	0	0	0	0.0024096	2	11333	11333;11381		106.94	59.191	1	4227900			49443	4787	28287	28288	60483;60484	60483					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	485.800217	969.585882	0.46999	0.00022832	-0.15138	-7.3541E-05	0.31861	0.00015478	485.80006939464187	57.356	2.5141	57.339	56.43	58.945	-0.0172					177	91	2	0	0	0	0.0037449	4	14234	13874;13978;14055;14234		96.367	48.618	1	685410			49444	4787	28287	28288	60485;60486;60487;60488	60488					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80047607421875	2	485.800217	969.585882	0.38117	0.00018517	-0.25951	-0.00012607	0.12166	5.9102E-05	485.80005608027966	60.673	2.1328	60.664	58.811	60.944	-0.0094566					151	76	3	0	0	0	0.0059482	5	14523	14423;14523;14572;14626;14706		85.642	49.514	1	1385600			49445	4787	28287	28288	60489;60490;60491;60492;60493	60490					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002624511719	2	485.800217	969.585882	0.19639	9.5405E-05	-0.083742	-4.0682E-05	0.11264	5.4723E-05	485.80019159003797	61.137	2.5599	61.128	60.944	63.503	-0.0094566					179	94	2	0	0	0	0.0016361	3	15111	14985;15044;15111		114.65	72.809	1	973990			49446	4787	28287	28288	60494;60495;60496	60496					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	485.800217	969.585882	0.35036	0.0001702	0.0068683	3.3366E-06	0.35722	0.00017354	485.8000877829389	73.546	1.9022	73.516	72.254	74.156	-0.029381					140	68	3	0	0	0	0.023967	1	18694	18694		62.573	20.733	1	537190			49447	4787	28287	28288	60497	60497					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80047607421875	2	485.800217	969.585882	0.44653	0.00021693	0.21366	0.0001038	0.66019	0.00032072	485.80026011455755	86.523	1.8765	86.514	85.559	87.436	-0.0090027					138	74	2	0	0	0	0.063853	1	22530	22530		47.749	11.622	1	230740			49448	4787	28287	28288	60498	60498					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8001403808594	2	485.800217	969.585882	0.3803	0.00018475	-0.0012753	-6.1953E-07	0.37903	0.00018413	485.8002046971747	87.582	1.7054	87.577	87.421	89.127	-0.0056229					134	82	2	0	0	0	0.041175	3	23241	23241;23284;23335		56.177	20.05	1	243160			49449	4787	28287	28288	60499;60500;60501	60499					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80029296875	2	485.800217	969.585882	0.27851	0.0001353	0.93431	0.00045389	1.2128	0.00058919	485.8001252933696	97.967	0.18013	97.96	97.879	98.059	-0.0068207					32	18	2	0	0	0	0.23007	1	26240	26240		19.257	2.1441	1	176310			49450	4787	28287	28288	60502	60502					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80035400390625	2	485.800217	969.585882	0.23884	0.00011603	1.8639	0.00090546	2.1027	0.0010215	485.8001951745314	99.503	0.50017	99.496	99.16	99.66	-0.006897					115	63	2	0	0	0	0.14076	2	26650	26621;26650		32.305	3.2239	1	165600			49451	4787	28287	28288	60503;60504	60504					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003845214844	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.611	1	52.61	52.11	53.11	-0.00080872								0	0	0	0.010523	1	12355	12355		79.596	39.647	1				49452	4787	28287	28288	60505	60505					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8004150390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.858	1	52.857	52.357	53.357	-0.00080872								0	0	0	0.0060707	1	12431	12431		86.332	46.382	1				49453	4787	28287	28288	60506	60506					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.069	1	53.059	52.559	53.559	-0.0096054								0	0	0	0.013058	1	12496	12496		75.761	39.634	1				49454	4787	28287	28288	60507	60507					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.047	1	54.031	53.531	54.531	-0.015923								0	0	0	0.00062564	1	12801	12801		99.755	59.806	1				49455	4787	28287	28288	60508	60508					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.228	1	54.212	53.712	54.712	-0.015923								0	0	0	0.047655	1	12857	12857		61.602	25.475	1				49456	4787	28287	28288	60509	60509					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8000793457031	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.808	1	63.799	63.299	64.299	-0.0095329								0	0	0	0.014903	1	15814	15814		72.968	33.018	1				49457	4787	28287	28288	60510	60510					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.982	1	63.972	63.472	64.472	-0.0095329								0	0	0	0.039802	1	15867	15867		63.961	24.011	1				49458	4787	28287	28288	60511	60511					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.195	1	64.185	63.685	64.685	-0.0095291								0	0	0	0.073524	1	15931	15931		53.833	17.706	1				49459	4787	28287	28288	60512	60512					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80023193359375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.408	1	64.399	63.899	64.899	-0.0095291								0	0	0	0.00075361	1	15997	15997		96.111	58.137	1				49460	4787	28287	28288	60513	60513					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.565	1	64.555	64.055	65.055	-0.0095291								0	0	0	0.044423	1	16045	16045		62.573	26.446	1				49461	4787	28287	28288	60514	60514					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8005676269531	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.768	1	64.758	64.258	65.258	-0.0095291								0	0	0	0.035558	1	16107	16107		65.235	27.261	1				49462	4787	28287	28288	60515	60515					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.800048828125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.304	1	65.293	64.793	65.793	-0.011337								0	0	0	0.0040423	1	16272	16272		89.401	49.451	1				49463	4787	28287	28288	60516	60516					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.463	1	65.452	64.952	65.952	-0.011337								0	0	0	0.044423	1	16321	16321		62.573	26.446	1				49464	4787	28287	28288	60517	60517					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80035400390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.715	1	65.704	65.204	66.204	-0.011337								0	0	0	0.052743	1	16398	16398		60.074	23.947	1				49465	4787	28287	28288	60518	60518					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.561	1	66.547	66.047	67.047	-0.013588								0	0	0	0.031491	1	16656	16656		66.457	20.757	1				49466	4787	28287	28288	60519	60519					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80035400390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.006	1	66.992	66.492	67.492	-0.013588								0	0	0	0.014903	1	16790	16790		72.968	27.268	1				49467	4787	28287	28288	60520	60520					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.055	1	67.038	66.538	67.538	-0.016296								0	0	0	0.015595	1	16805	16805		71.922	21.989	1				49468	4787	28287	28288	60521	60521					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7999572753906	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.238	1	67.222	66.722	67.722	-0.016296								0	0	0	0.039802	1	16861	16861		63.961	18.261	1				49469	4787	28287	28288	60522	60522					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.421	1	67.405	66.905	67.905	-0.016296								0	0	0	0.044423	1	16917	16917		62.573	26.446	1				49470	4787	28287	28288	60523	60523					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80023193359375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.571	1	67.555	67.055	68.055	-0.016296								0	0	0	0.073524	1	16962	16962		53.833	13.883	1				49471	4787	28287	28288	60524	60524					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80023193359375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.123	1	68.104	67.604	68.604	-0.018768								0	0	0	0.039802	1	17132	17132		63.961	24.011	1				49472	4787	28287	28288	60525	60525					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003845214844	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.506	1	71.478	70.978	71.978	-0.027275								0	0	0	0.078733	1	18168	18168		52.268	4.5197	1				49473	4787	28287	28288	60526	60526					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.545	1	88.542	88.042	89.042	-0.0028381								0	0	0	0.086509	1	23382	23382		49.933	13.806	1				49474	4787	28287	28288	60527	60527					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80108642578125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.144	1	89.144	88.644	89.644	-0.00080872								0	0	0	0.093871	1	23564	23564		47.749	7.799	1				49475	4787	28287	28288	60528	60528					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8004150390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.286	1	89.285	88.785	89.785	-0.00080872								0	0	0	0.11932	1	23608	23608		41.84	5.7126	1				49476	4787	28287	28288	60529	60529					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8004150390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.703	1	95.699	95.199	96.199	-0.0038147								0	0	0	0.16039	1	25572	25572		32.305	3.2239	1				49477	4787	28287	28288	60530	60530					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8004150390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.342	1	96.338	95.838	96.838	-0.0038147								0	0	0	0.14393	1	25762	25762		36.127	7.0454	1				49478	4787	28287	28288	60531	60531					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80035400390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.599	1	96.593	96.093	97.093	-0.0055466								0	0	0	0.086509	1	25837	25837		49.933	13.806	1				49479	4787	28287	28288	60532	60532					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.615	1	96.609	96.109	97.109	-0.0055466								0	0	0	0.14393	1	25841	25841		36.127	7.0454	1				49480	4787	28287	28288	60533	60533					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8000183105469	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.127	1	97.121	96.621	97.621	-0.0055466								0	0	0	0.11063	1	25994	25994		43.858	7.7313	1				49481	4787	28287	28288	60534	60534					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.79998779296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.9	1	111.92	111.42	112.42	0.0131								0	0	0	0.12746	1	29132	29132		39.95	17.213	1				49482	4787	28287	28288	60535	60535					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003845214844	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.25	1	112.26	111.76	112.76	0.0131								0	0	0	0.12743	1	29219	29219		39.957	3.8303	1				49483	4787	28287	28288	60536	60536					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.38	1	112.39	111.89	112.89	0.0131								0	0	0	0.19013	1	29249	29249		25.399	2.663	1				49484	4787	28287	28288	60537	60537					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80023193359375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.41	1	112.42	111.92	112.92	0.0131								0	0	0	0.23852	1	29258	29258		10.074	1.3285	1				49485	4787	28287	28288	60538	60538					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8000793457031	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.48	1	112.49	111.99	112.99	0.0131								0	0	0	0.19013	1	29275	29275		25.399	2.663	1				49486	4787	28287	28288	60539	60539					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002014160156	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.54	1	112.55	112.05	113.05	0.0131								0	0	0	0.22377	1	29287	29287		14.838	1.7958	1				49487	4787	28287	28288	60540	60540					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7999572753906	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.83	1	112.85	112.35	113.35	0.014824								0	0	0	0.16039	1	29359	29359		32.305	3.2239	1				49488	4787	28287	28288	60541	60541					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80023193359375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.12	1	113.13	112.63	113.63	0.014824								0	0	0	0.078733	1	29434	29434		52.268	16.141	1				49489	4787	28287	28288	60542	60542					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8000793457031	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.26	1	113.28	112.78	113.78	0.014824								0	0	0	0.21009	1	29470	29470		19.257	2.1441	1				49490	4787	28287	28288	60543	60543					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7999267578125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.42	1	113.43	112.93	113.93	0.014824								0	0	0	0.21009	1	29508	29508		19.257	2.1441	1				49491	4787	28287	28288	60544	60544					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80078125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.44	1	113.46	112.96	113.96	0.014824								0	0	0	0.19013	1	29516	29516		25.399	2.663	1				49492	4787	28287	28288	60545	60545					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8006896972656	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.46	1	113.47	112.97	113.97	0.014824								0	0	0	0.21009	1	29519	29519		19.257	2.1441	1				49493	4787	28287	28288	60546	60546					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80035400390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.63	1	113.65	113.15	114.15	0.014824								0	0	0	0.22377	1	29563	29563		14.838	1.7958	1				49494	4787	28287	28288	60547	60547					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7998962402344	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.84	1	113.85	113.35	114.35	0.01519								0	0	0	0.16039	1	29613	29613		32.305	3.2239	1				49495	4787	28287	28288	60548	60548					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.91	1	113.93	113.43	114.43	0.016708								0	0	0	0.13597	1	29632	29632		37.974	8.8924	1				49496	4787	28287	28288	60549	60549					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.800537109375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.92	1	113.93	113.43	114.43	0.016708								0	0	0	0.16039	1	29634	29634		32.305	3.2239	1				49497	4787	28287	28288	60550	60550					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.800537109375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.01	1	114.03	113.53	114.53	0.016708								0	0	0	0.21009	1	29656	29656		19.257	2.1441	1				49498	4787	28287	28288	60551	60551					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.15	1	114.17	113.67	114.67	0.016708								0	0	0	0.21009	1	29690	29690		19.257	2.1441	1				49499	4787	28287	28288	60552	60552					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7996520996094	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.29	1	114.3	113.8	114.8	0.016708								0	0	0	0.19013	1	29722	29722		25.399	2.663	1				49500	4787	28287	28288	60553	60553					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8000793457031	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.44	1	114.46	113.96	114.96	0.016708								0	0	0	0.19013	1	29760	29760		25.399	2.663	1				49501	4787	28287	28288	60554	60554					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80035400390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.55	1	114.57	114.07	115.07	0.016708								0	0	0	0.22377	1	29788	29788		14.838	1.7958	1				49502	4787	28287	28288	60555	60555					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003845214844	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.63	1	114.65	114.15	115.15	0.016708								0	0	0	0.19932	1	29806	29806		22.736	5.6234	1				49503	4787	28287	28288	60556	60556					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.75	1	114.76	114.26	115.26	0.016708								0	0	0	0.21009	1	29834	29834		19.257	2.1441	1				49504	4787	28287	28288	60557	60557					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.88	1	114.89	114.39	115.39	0.016708								0	0	0	0.19013	1	29864	29864		25.399	2.663	1				49505	4787	28287	28288	60558	60558					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.89	1	114.91	114.41	115.41	0.016708								0	0	0	0.19013	1	29868	29868		25.399	2.663	1				49506	4787	28287	28288	60559	60559					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7996826171875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.04	1	115.06	114.56	115.56	0.018738								0	0	0	0.21009	1	29901	29901		19.257	2.1441	1				49507	4787	28287	28288	60560	60560					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8001403808594	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.06	1	115.08	114.58	115.58	0.018738								0	0	0	0.16757	1	29907	29907		30.637	7.9003	1				49508	4787	28287	28288	60561	60561					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003845214844	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.19	1	115.21	114.71	115.71	0.018738								0	0	0	0.19013	1	29932	29932		25.399	2.663	1				49509	4787	28287	28288	60562	60562					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.33	1	115.35	114.85	115.85	0.018738								0	0	0	0.21009	1	29962	29962		19.257	2.1441	1				49510	4787	28287	28288	60563	60563					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.800048828125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.54	1	115.56	115.06	116.06	0.018738								0	0	0	0.21009	1	30006	30006		19.257	2.1441	1				49511	4787	28287	28288	60564	60564					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7997741699219	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.67	1	115.69	115.19	116.19	0.018738								0	0	0	0.22377	1	30038	30038		14.838	1.7958	1				49512	4787	28287	28288	60565	60565					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80059814453125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.79	1	115.81	115.31	116.31	0.018738								0	0	0	0.20639	1	30067	30067		20.454	2.3073	1				49513	4787	28287	28288	60566	60566					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7998352050781	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.82	1	115.84	115.34	116.34	0.018738								0	0	0	0.20639	1	30076	30076		20.454	2.3073	1				49514	4787	28287	28288	60567	60567					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.01	1	116.03	115.53	116.53	0.018738								0	0	0	0.2489	1	30112	30112		6.7232	0.99131	1				49515	4787	28287	28288	60568	60568					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.51	1	116.53	116.03	117.03	0.020988								0	0	0	0.23852	1	30229	30229		10.074	1.3285	1				49516	4787	28287	28288	60569	60569					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.64	1	116.67	116.17	117.17	0.020988								0	0	0	0.19534	1	30260	30260		24.021	5.8742	1				49517	4787	28287	28288	60570	60570					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.83	1	116.85	116.35	117.35	0.020988								0	0	0	0.19013	1	30303	30303		25.399	2.663	1				49518	4787	28287	28288	60571	60571					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8000183105469	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.12	1	117.15	116.65	117.65	0.023476								0	0	0	0.23852	1	30372	30372		10.074	1.3285	1				49519	4787	28287	28288	60572	60572					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8001708984375	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.24	1	117.27	116.77	117.77	0.023476								0	0	0	0.22666	1	30399	30399		13.906	1.6654	1				49520	4787	28287	28288	60573	60573					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.38	1	117.4	116.9	117.9	0.023476								0	0	0	0.2489	1	30427	30427		6.7232	0.99131	1				49521	4787	28287	28288	60574	60574					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8006591796875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.53	1	117.55	117.05	118.05	0.023476								0	0	0	0.22377	1	30459	30459		14.838	1.7958	1				49522	4787	28287	28288	60575	60575					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002624511719	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.56	1	117.58	117.08	118.08	0.023476								0	0	0	0.16039	1	30468	30468		32.305	3.2239	1				49523	4787	28287	28288	60576	60576					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8004455566406	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.74	1	117.77	117.27	118.27	0.023476								0	0	0	0.21009	1	30512	30512		19.257	2.1441	1				49524	4787	28287	28288	60577	60577					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8005065917969	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.9	1	117.92	117.42	118.42	0.023476								0	0	0	0.23852	1	30547	30547		10.074	1.3285	1				49525	4787	28287	28288	60578	60578					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.03	1	118.06	117.56	118.56	0.023476								0	0	0	0.19013	1	30578	30578		25.399	2.663	1				49526	4787	28287	28288	60579	60579					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.2	1	118.23	117.73	118.73	0.026253								0	0	0	0.21009	1	30614	30614		19.257	2.1441	1				49527	4787	28287	28288	60580	60580					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80029296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.32	1	118.35	117.85	118.85	0.026253								0	0	0	0.16039	1	30643	30643		32.305	3.2239	1				49528	4787	28287	28288	60581	60581					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7999267578125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.46	1	118.49	117.99	118.99	0.026253								0	0	0	0.16039	1	30675	30675		32.305	3.2239	1				49529	4787	28287	28288	60582	60582					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7999572753906	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.74	1	118.77	118.27	119.27	0.026253								0	0	0	0.22377	1	30738	30738		14.838	1.7958	1				49530	4787	28287	28288	60583	60583					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.800048828125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.87	1	118.9	118.4	119.4	0.026253								0	0	0	0.16757	1	30767	30767		30.637	7.9003	1				49531	4787	28287	28288	60584	60584					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8004455566406	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.01	1	119.04	118.54	119.54	0.026253								0	0	0	0.2575	1	30799	30799		3.9444	0.66309	1				49532	4787	28287	28288	60585	60585					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.79998779296875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.14	1	119.16	118.66	119.66	0.026253								0	0	0	0.22377	1	30827	30827		14.838	1.7958	1				49533	4787	28287	28288	60586	60586					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8006591796875	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.3	1	119.33	118.83	119.83	0.027756								0	0	0	0.2575	1	30862	30862		3.9444	0.66309	1				49534	4787	28287	28288	60587	60587					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80035400390625	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.46	1	119.49	118.99	119.99	0.027756								0	0	0	0.21009	1	30898	30898		19.257	2.1441	1				49535	4787	28287	28288	60588	60588					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80010986328125	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.49	1	119.52	119.02	120.02	0.027756								0	0	0	0.22377	1	30904	30904		14.838	1.7958	1				49536	4787	28287	28288	60589	60589					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7997741699219	2	485.800217	969.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.59	1	119.62	119.12	120.12	0.027756								0	0	0	0.19013	1	30926	30926		25.399	2.663	1				49537	4787	28287	28288	60590	60590					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2654113769531	2	485.800217	969.585882	0.84711	0.00041153	-0.99392	-0.00048284	-0.14681	-7.1319E-05	485.79959507314726	56.247	0.67889	56.227	55.75	56.429	-0.019077					43	24	2	0	0	0	0.12743	1	13394	13394		37.974	0	1	907900			49538	4787	28287	28288	60591	60591					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2848205566406	2	485.800217	969.585882	0.36472	0.00017718	-0.0049375	-2.3986E-06	0.35979	0.00017478	485.80016831774975	74.311	0.55415	74.28	74.032	74.586	-0.030655					26	19	2	0	0	0	0.11397	1	19093	19093		49.933	13.806	1	574750			49539	4787	28287	28288	60592	60592					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2921142578125	2	485.800217	969.585882	0.49138	0.00023871	0.81601	0.00039642	1.3074	0.00063513	485.80037469371354	83.678	1.5093	83.661	82.872	84.381	-0.016823					95	64	2	0	0	0	0.13898	1	21676	21676		43.858	7.7313	1	300740			49540	4787	28287	28288	60593	60593					0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	485.800217	969.585882	0.068934	3.3488E-05	1.3685	0.00066483	1.4375	0.00069832	485.8001879749566	97.833	0.41478	97.894	97.691	98.106	0.061516	-0.11233	-9.5512E-06	NaN	30.637	78	50	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157730			49541	4787	28287	28288							0.09987217482716915
TSALPIIQK	9	Unmodified	_TSALPIIQK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	485.800217	969.585882	0.031226	1.517E-05	2.6718	0.001298	2.7031	0.0013131	485.80030177941114	101.7	0.49968	101.73	101.39	101.89	0.027214	0.033748	-0.00011673	NaN	25.399	117	66	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128760			49542	4787	28287	28288							0.09987217482716915
TSALPLSAVL	10	Unmodified	_TSALPLSAVL_					0	0	0			REV__ENST00000354725.7_1_7:127292278-127292377:+|nuORF	REV__ENST00000354725.7_1_7:127292278-127292377:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2922668457031	2	486.292225	970.569897	0.22879	0.00011126	-0.14943	-7.2669E-05	0.079354	3.8589E-05	486.29241846367705	43.528	1.7052	43.528	43.034	44.739	0					185	62	5	0	0	0	0.0036033	1	9657	9657		99.799	20.203	1	20231000	+		49543	20176	28288	28289	60594	60594					0.08343511245811897
TSALPLSAVL	10	Unmodified	_TSALPLSAVL_					0	0	0			REV__ENST00000354725.7_1_7:127292278-127292377:+|nuORF	REV__ENST00000354725.7_1_7:127292278-127292377:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2923278808594	2	486.292225	970.569897	0.37906	0.00018433	-0.17067	-8.2995E-05	0.20839	0.00010134	486.29248047108206	43.422	1.6992	43.499	43.075	44.774	0.077515					172	62	5	0	0	0	0.0036033	1	9620	9620		99.799	6.6331	1	21436000	+		49544	20176	28288	28289	60595	60595					0.08343511245811897
TSAPKGSVLQ	10	Unmodified	_TSAPKGSVLQ_					0	0	0		ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0-3|SCARB1;nc|ENSG00000073060|Q8WTV0-4|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF	ENSG00000073060|ENST00000261693|SCARB1	ENSG00000073060|ENST00000261693|SCARB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7909240722656	2	494.277106	986.53966	0.39838	0.00019691	0.15408	7.6157E-05	0.55246	0.00027307	494.2768843165395	23.589	0.79555	23.55	23.143	23.939	-0.038927					62	27	3	0	0	0	0.3641	1	3421	3421		10.074	0.6908	1	451890			49545	996	28289	28290	60596	60596					0.045851525806369864
TSAPLRQLL	9	Unmodified	_TSAPLRQLL_					0	0	0		ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.80364990234375	2	499.803291	997.59203	0.62293	0.00031134	-0.042351	-2.1167E-05	0.58058	0.00029017	499.8031889335499	45.394	0.7655	45.454	44.998	45.763	0.059834					63	26	4	0	0	0	0.068501	1	10113	10113		46.021	3.7085	1	1052000			49546	6967	28290	28291	60597	60597					0.09313735714226823
TSAPRTPLK	9	Unmodified	_TSAPRTPLK_					0	0	0			REV__nc|ENSG00000204843|Q14203-3|DCTN1	REV__nc|ENSG00000204843|Q14203-3|DCTN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001403808594	2	485.787641	969.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.171	1	49.171	48.671	49.671	0								0	0	0	0.21726	1	11308	11308		16.942	1.0951	1		+		49547	23170	28291	28292	60598	60598					0.07473162680139467
TSAPRTPLK	9	Unmodified	_TSAPRTPLK_					0	0	0			REV__nc|ENSG00000204843|Q14203-3|DCTN1	REV__nc|ENSG00000204843|Q14203-3|DCTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8001403808594	2	485.787641	969.56073	0.62808	0.00030511	1.0765	0.00052296	1.7046	0.00082807	485.7896625324251	60.545	0.44654	60.642	60.503	60.949	0.096985					29	15	3	0	0	0	0.12642	1	14861	14861		34.402	5.3201	1	186200	+		49548	23170	28291	28292	60599	60599					0.07473162680139467
TSAPTTGNAI	10	Unmodified	_TSAPTTGNAI_					0	0	0			REV__ENSG00000111249|ENST00000261726|CUX2	REV__ENSG00000111249|ENST00000261726|CUX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7376708984375	2	466.737814	931.461075	0.65657	0.00030645	-0.4459	-0.00020812	0.21067	9.8328E-05	466.7374855776664	36.519	0.51799	36.606	36.4	36.918	0.08625					41	18	3	0	0	0	0.073661	1	7429	7429		53.833	0	1	452540	+		49549	14712	28292	28293	60600	60600					-0.0073969972447684995
TSAQAMHEP	9	Unmodified	_TSAQAMHEP_					0	0	0			REV__ENSG00000139800|ENST00000267294|ZIC5	REV__ENSG00000139800|ENST00000267294|ZIC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.3051452636719	2	486.216192	970.41783	0.021852	1.0625E-05	-0.25033	-0.00012171	-0.22848	-0.00011109	486.2167904044948	65.503	1.3993	65.592	64.769	66.169	0.088882					65	51	3	0	0	0	0.24913	1	16443	16443		12.532	0	1	190770	+		49550	16007	28293	28294	60601	60601					-0.06856212773402603
TSAQLKRPA	9	Unmodified	_TSAQLKRPA_					0	0	0			REV__ENSG00000204161|ENST00000374153|TMEM273	REV__ENSG00000204161|ENST00000374153|TMEM273	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002014160156	2	486.285266	970.555979	0.25579	0.00012439	0.60622	0.0002948	0.86201	0.00041918	486.28492467314953	79.879	1.0997	79.879	79.441	80.54	0					109	41	4	0	0	0	0.24913	1	20836	20836		12.532	0.89125	1	346870	+		49551	18920	28294	28295	60602	60602					0.06952278537369239
TSAQLKRPA	9	Unmodified	_TSAQLKRPA_					0	0	0			REV__ENSG00000204161|ENST00000374153|TMEM273	REV__ENSG00000204161|ENST00000374153|TMEM273	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.28497314453125	2	486.285266	970.555979	0.25092	0.00012202	-0.96495	-0.00046924	-0.71403	-0.00034722	486.2848646129866	79.791	0.79876	79.852	79.618	80.417	0.061409					53	29	2	0	0	0	0.27532	1	20806	20806		12.532	1.7076	1	222860	+		49552	18920	28294	28295	60603	60603					0.06952278537369239
TSAQLKRPA	9	Unmodified	_TSAQLKRPA_					0	0	0			REV__ENSG00000204161|ENST00000374153|TMEM273	REV__ENSG00000204161|ENST00000374153|TMEM273	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8000793457031	2	486.285266	970.555979	0.82651	0.00040192	-0.89366	-0.00043457	-0.067152	-3.2655E-05	486.2846881580295	78.174	0.50037	78.143	77.87	78.37	-0.030434					32	18	2	0	0	0	0.24913	1	20217	20217		12.532	0	1	142140	+		49553	18920	28294	28295	60604	60604					0.06952278537369239
TSARRAEPR	9	Unmodified	_TSARRAEPR_					0	0	0		ENST00000155926.8_1_2:12857592-12857697:+|nuORF	ENST00000155926.8_1_2:12857592-12857697:+|nuORF	ENST00000155926.8_1_2:12857592-12857697:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8187866210938	2	522.288871	1042.56319	0.2557	0.00013355	-2.832	-0.0014791	-2.5763	-0.0013456	522.2868229859284	39.37	0.6022	39.462	39.201	39.803	0.09267					42	21	3	0	0	0	0.24913	1	8377	8377		12.532	0	1	259030			49554	8780	28295	28296	60605	60605					0.043610111378029615
TSARRAEPR	9	Unmodified	_TSARRAEPR_					0	0	0		ENST00000155926.8_1_2:12857592-12857697:+|nuORF	ENST00000155926.8_1_2:12857592-12857697:+|nuORF	ENST00000155926.8_1_2:12857592-12857697:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	522.288871	1042.56319	0.11479	5.9951E-05	-1.8266	-0.00095401	-1.7118	-0.00089406	522.2871555637347	39.398	0.71106	39.398	39.04	39.751	0	-0.014463	0.00074819	NaN	12.532	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279850			49555	8780	28295	28296							0.043610111378029615
TSARRAEPR	9	Unmodified	_TSARRAEPR_					0	0	0		ENST00000155926.8_1_2:12857592-12857697:+|nuORF	ENST00000155926.8_1_2:12857592-12857697:+|nuORF	ENST00000155926.8_1_2:12857592-12857697:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.288871	1042.56319	0.48175	0.00025161	-2.9405	-0.0015358	-2.4588	-0.0012842	522.2868046842638	39.278	0.49474	39.377	39.155	39.65	0.099407	-0.035458	-0.00041538	NaN	12.532	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300230			49556	8780	28295	28296							0.043610111378029615
TSATRRKK	8	Unmodified	_TSATRRKK_					0	0	0		nc|ENSG00000168228|Q9H5U6-3|ZCCHC4;ENSG00000168228|ENST00000302874|ZCCHC4	nc|ENSG00000168228|Q9H5U6-3|ZCCHC4	nc|ENSG00000168228|Q9H5U6-3|ZCCHC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.29058837890625	2	474.290882	946.567212	0.33668	0.00015968	-0.14524	-6.8886E-05	0.19144	9.0798E-05	474.2907060436796	71.591	1.9657	71.563	70.854	72.82	-0.027275					229	70	4	0	0	0	0.45942	1	18043	18043		2.5775	0	1	2573300			49557	6256	28296	28297	60606	60606					0.09179100631513393
TSATTNLKCS	10	Unmodified	_TSATTNLKCS_					0	0	0		ENSG00000084674|ENST00000233242|APOB;APOB|p.G3575Afs*48|1|0.18|ENSG00000084674|chr2:21006144-21006144|C/-|frameshift_variant	ENSG00000084674|ENST00000233242|APOB	ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.293212890625	2	513.250231	1024.48591	0.41762	0.00021435	3.6803	0.0018889	4.0979	0.0021033	513.2523149237953	64.312	0.32407	64.405	64.284	64.608	0.09288					17	11	2	0	0	0	0.28434	1	16033	16033		25.399	3.6527	1	136870			49558	1244	28297	28298	60607	60607					-0.02535387913417253
TSATVKVQGV	10	Unmodified	_TSATVKVQGV_					0	0	0		nc|ENSG00000160145|O60229-6|KALRN;nc|ENSG00000160145|O60229-4|KALRN;nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN	nc|ENSG00000160145|O60229-6|KALRN	nc|ENSG00000160145|O60229-6|KALRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7769470214844	2	495.284931	988.55531	0.84739	0.0004197	3.5177	0.0017423	4.3651	0.002162	495.28663464139436	60.576	0.31668	60.673	60.579	60.896	0.096985					15	10	2	0	0	0	0.23542	1	14816	14816		32.786	0	1	162440			49559	5439	28298	28299	60608	60608					0.06057439097673978
TSAVPLRIL	9	Unmodified	_TSAVPLRIL_					0	0	0		ENSG00000169122|ENST00000519262|FAM110B	ENSG00000169122|ENST00000519262|FAM110B	ENSG00000169122|ENST00000519262|FAM110B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8002014160156	2	485.30821	968.601866	0.25401	0.00012327	-0.13336	-6.4722E-05	0.12064	5.8549E-05	485.30805256704326	59.079	0.75752	59.17	58.677	59.434	0.091301					45	26	2	0	0	0	0.18803	1	14269	14269		25.399	3.6527	1	221250			49560	6328	28299	28300	60609	60609					0.11630923719621933
TSCLTTSTR	9	Unmodified	_TSCLTTSTR_					0	0	0		ENST00000242480.3_1_10:64575680-64575746:-|nuORF	ENST00000242480.3_1_10:64575680-64575746:-|nuORF	ENST00000242480.3_1_10:64575680-64575746:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2262878417969	2	485.237124	968.459695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.793	1	24.762	24.262	25.262	-0.031408								0	0	0	0.25631	1	3856	3856		4.3292	0.38484	1				49561	8889	28300	28301	60610	60610					-0.025796570849024647
TSCSSYQQTF	10	Unmodified	_TSCSSYQQTF_					0	0	0			REV__nc|ENSG00000290445|Q5T2Q4|CCNYL2	REV__nc|ENSG00000290445|Q5T2Q4|CCNYL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7925415039062	2	576.237321	1150.46009	0.41985	0.00024193	-1.909	-0.0011001	-1.4892	-0.00085813	576.7377352291662	75.474	0.42828	75.442	75.184	75.612	-0.031479					25	15	2	0	0	0	0.31629	1	19318	19318		10.074	1.4806	1	115590	+		49562	23248	28301	28302	60611	60611					-0.10912282155686626
TSDLHLFNVC	10	Unmodified	_TSDLHLFNVC_					0	0	0		ENST00000486734.5_1_2:220072724-220073377:+|nuORF	ENST00000486734.5_1_2:220072724-220073377:+|nuORF	ENST00000486734.5_1_2:220072724-220073377:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.775634765625	2	574.773874	1147.53319	0.12491	7.1796E-05	3.1789	0.0018272	3.3038	0.0018989	574.7754933904333	24.397	0.57183	24.358	24.02	24.591	-0.038927					37	19	3	0	0	0	0.37454	1	3764	3764		8.1555	1.4324	1	186610			49563	11105	28302	28303	60612	60612					-0.03467108642394123
TSDLWTQAK	9	Unmodified	_TSDLWTQAK_					0	0	0			REV__ENST00000543042.5_1_11:72091398-72145518:-|nuORF	REV__ENST00000543042.5_1_11:72091398-72145518:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.266845703125	2	525.266739	1048.51892	0.39213	0.00020597	-0.14735	-7.7399E-05	0.24478	0.00012857	525.266565714974	27.221	0.52229	27.221	27.007	27.53	0					32	17	2	0	0	0	0.23007	1	4598	4598		19.257	1.1106	1	174000	+		49564	22143	28303	28304	60613	60613					-0.00339437799038933
TSDLWTQAK	9	Unmodified	_TSDLWTQAK_					0	0	0			REV__ENST00000543042.5_1_11:72091398-72145518:-|nuORF	REV__ENST00000543042.5_1_11:72091398-72145518:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.266357421875	2	525.266739	1048.51892	0.39448	0.00020721	-0.24867	-0.00013062	0.14582	7.6592E-05	525.2666038683017	27.227	0.57055	27.216	26.984	27.555	-0.011562					30	19	2	0	0	0	0.18803	1	4583	4583		25.399	2.663	1	181630	+		49565	22143	28303	28304	60614	60614					-0.00339437799038933
TSDLWTQAK	9	Unmodified	_TSDLWTQAK_					0	0	0			REV__ENST00000543042.5_1_11:72091398-72145518:-|nuORF	REV__ENST00000543042.5_1_11:72091398-72145518:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	525.266739	1048.51892	0.39213	0.00020597	-0.14735	-7.7399E-05	0.24478	0.00012857	525.266565714974	27.221	0.52229	27.221	27.007	27.53	0	0.0026215	3.888E-05	NaN	25.399	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174000	+		49566	22143	28303	28304							-0.00339437799038933
TSDLWTQAK	9	Unmodified	_TSDLWTQAK_					0	0	0			REV__ENST00000543042.5_1_11:72091398-72145518:-|nuORF	REV__ENST00000543042.5_1_11:72091398-72145518:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	525.266739	1048.51892	0.29973	0.00015744	-0.15206	-7.9871E-05	0.14767	7.7566E-05	525.2665929688022	27.24	0.50807	27.218	26.985	27.493	-0.02141	-2.9862E-05	3.3935E-05	NaN	25.399	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170110	+		49567	22143	28303	28304							-0.00339437799038933
TSDLWTQAK	9	Unmodified	_TSDLWTQAK_					0	0	0			REV__ENST00000543042.5_1_11:72091398-72145518:-|nuORF	REV__ENST00000543042.5_1_11:72091398-72145518:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	525.266739	1048.51892	0.39448	0.00020721	-0.24867	-0.00013062	0.14582	7.6592E-05	525.2666038683017	27.227	0.57055	27.216	26.984	27.555	-0.011562	-0.0025917	-6.7556E-05	NaN	25.399	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181630	+		49568	22143	28303	28304							-0.00339437799038933
TSDPSIQFLQ	10	Unmodified	_TSDPSIQFLQ_					0	0	0			REV__ENST00000530908.5_1_21:37444388-37445177:+|nuORF	REV__ENST00000530908.5_1_21:37444388-37445177:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.28515625	2	568.285128	1134.5557	0.33387	0.00018973	1.1263	0.00064007	1.4602	0.00082981	568.2856385109188	31.974	0.83513	31.974	31.694	32.529	0					58	29	3	0	0	0	0.19345	1	6036	6036		33.445	2.7415	1	812320	+		49569	22014	28304	28305	60615	60615					-0.006191859731416116
TSDPSIQFLQ	10	Unmodified	_TSDPSIQFLQ_					0	0	0			REV__ENST00000530908.5_1_21:37444388-37445177:+|nuORF	REV__ENST00000530908.5_1_21:37444388-37445177:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.7548828125	2	568.285128	1134.5557	0.28865	0.00016404	1.1594	0.00065885	1.448	0.00082289	568.2857763661193	31.859	0.6214	31.9	31.672	32.293	0.040991					40	21	2	0	0	0	0.31642	1	5947	5947		10.8	0.64894	1	811750	+		49570	22014	28304	28305	60616	60616					-0.006191859731416116
TSDQEKRLLHQ	11	Unmodified	_TSDQEKRLLHQ_					0	0	0		ENST00000530060.5_1_11:8132247-8149890:-|nuORF;ENST00000524799.5_1_11:8132247-8159930:-|nuORF;nc|ENSG00000166405|Q7Z5B4-5|RIC3;ENSG00000166405|ENST00000309737|RIC3	ENST00000530060.5_1_11:8132247-8149890:-|nuORF	ENST00000530060.5_1_11:8132247-8149890:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2477722167969	3	452.240635	1353.70008	-0.065667	-2.9697E-05	-0.85227	-0.00038543	-0.91794	-0.00041513	452.2405019132199	25.458	0.51507	25.402	24.999	25.514	-0.055931					25	16	2	0	0	0	0.33122	1	4092	4092		4.4062	3.1913	1	155760			49571	6074	28305	28306	60617	60617					0.03737455506848164
TSEDGDHFSDV	11	Unmodified	_TSEDGDHFSDV_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2468566894531	3	403.494918	1207.46293	0.02138	8.6266E-06	0.18144	7.3208E-05	0.20281	8.1835E-05	403.49503151707114	33.569	0.63188	33.569	33.259	33.891	0					45	22	3	0	0	0	0.329	1	6533	6533		2.6312	0	1	276740			49572	5988	28306	28307	60618	60618					-0.13250735497172172
TSEDGDHFSDV	11	Unmodified	_TSEDGDHFSDV_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.581298828125	3	403.494918	1207.46293	0.0089503	3.6114E-06	0.31237	0.00012604	0.32132	0.00012965	403.4951396795998	33.392	0.49403	33.458	33.239	33.733	0.06636					38	17	3	0	0	0	0.32951	1	6500	6500		2.4348	0	1	210720			49573	5988	28306	28307	60619	60619					-0.13250735497172172
TSEHFPFL	8	Unmodified	_TSEHFPFL_					0	0	0		ENST00000519256.5_1_5:170585477-170669877:+|nuORF;ENST00000389118.8_1_5:170395310-170711609:+|nuORF;ENST00000522533.5_1_5:170395310-170725859:+|nuORF;ENST00000519949.5_1_5:170395310-170725859:+|nuORF;ENSG00000204764|ENST00000523189|RANBP17;ENST00000520864.5_1_5:170395310-170632776:+|nuORF	ENST00000519256.5_1_5:170585477-170669877:+|nuORF	ENST00000519256.5_1_5:170585477-170669877:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.7790832519531	2	489.239993	976.465432	0.39406	0.00019279	2.6511	0.001297	3.0451	0.0014898	489.2410649330236	72.423	0.76239	72.423	71.963	72.726	0					42	27	2	0	0	0	0.33245	1	18412	18412		19.439	5.9311	1	177120			49574	8255	28307	28308	60620	60620					-0.023741905108977335
TSEIYLAR	8	Unmodified	_TSEIYLAR_					0	0	0			REV__ENST00000498116.1_1_4:15732587-15732905:-|nuORF	REV__ENST00000498116.1_1_4:15732587-15732905:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.23492431640625	2	476.758549	951.502546	-0.12674	-6.0426E-05	-0.05506	-2.625E-05	-0.1818	-8.6676E-05	476.75804940867044	15.279	0.34077	15.279	15.072	15.413	0					24	11	3	0	0	0	0.31375	1	925	925		26.341	0	1	45727	+		49575	21372	28308	28309	60621	60621					0.024854810348415413
TSEKLSSANI	10	Unmodified	_TSEKLSSANI_					0	0	0		ENST00000483189.1_1_13:111893629-111928079:+|nuORF;nc|ENSG00000102606|Q14155-6|ARHGEF7;nc|ENSG00000102606|Q14155-1|ARHGEF7;nc|ENSG00000102606|Q14155-5|ARHGEF7;nc|ENSG00000102606|Q14155-2|ARHGEF7;nc|ENSG00000102606|Q14155-3|ARHGEF7;nc|ENSG00000102606|Q14155|ARHGEF7;ENSG00000102606|ENST00000646102|ARHGEF7	ENST00000483189.1_1_13:111893629-111928079:+|nuORF	ENST00000483189.1_1_13:111893629-111928079:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7588500976562	2	525.277303	1048.54005	0.36203	0.00019016	-2.2066	-0.0011591	-1.8445	-0.0009689	525.7749154413691	19.404	0.67599	19.288	18.838	19.514	-0.11592					49	23	3	0	0	0	0.34325	1	2271	2271		13.906	1.3745	1	78420			49576	1774	28309	28310	60622	60622					0.01772527509797328
TSEKMTTYK	9	Unmodified	_TSEKMTTYK_					0	0	0		ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7825317382812	2	544.768257	1087.52196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.498	1	21.498	20.998	21.998	0								0	0	0	0.25858	1	2859	2859		3.5965	0.31518	1				49577	4421	28310	28311	60623	60623					-0.018299307365623463
TSEKYILH	8	Unmodified	_TSEKYILH_					0	0	0		ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.69012451171875	2	495.766374	989.518196	0.54095	0.00026818	-0.044562	-2.2092E-05	0.49638	0.00024609	495.766508862436	60.472	0.56403	60.472	60.228	60.792	0					37	20	2	0	0	0	0.3225	1	14746	14746		22.453	6.6055	1	833600			49578	5588	28311	28312	60624	60624					0.023017675519099612
TSEKYILH	8	Unmodified	_TSEKYILH_					0	0	0		ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	495.766374	989.518196	0.36328	0.0001801	0.28939	0.00014347	0.65266	0.00032357	495.7667837271534	60.35	0.59461	60.445	60.211	60.805	0.095089	-0.008523	0.00030184	NaN	22.453	38	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	675170			49579	5588	28311	28312							0.023017675519099612
TSEKYILH	8	Unmodified	_TSEKYILH_					0	0	0		ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	495.766374	989.518196	0.47638	0.00023617	-0.056081	-2.7803E-05	0.4203	0.00020837	495.7663749821382	60.454	0.58895	60.443	60.168	60.757	-0.011486	-0.010328	-4.0702E-05	NaN	22.453	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1051600			49580	5588	28311	28312							0.023017675519099612
TSELMTLR	8	Unmodified	_TSELMTLR_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.E627Rfs*75|1|0.16|ENSG00000197555|chr14:71650395-71650395|G/-|frameshift_variant	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.23492431640625	2	475.75241	949.490267	-0.15088	-7.1781E-05	0.62707	0.00029833	0.47619	0.00022655	475.7531452863058	15.017	0.42179	15.017	14.759	15.181	0					20	14	2	0	0	0	0.31375	1	925	925		26.341	0	1	59004			49581	7974	28312	28313	60625	60625					0.013501213001745782
TSELMTLR	8	Unmodified	_TSELMTLR_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;SIPA1L1|p.E627Rfs*75|1|0.16|ENSG00000197555|chr14:71650395-71650395|G/-|frameshift_variant	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	475.75241	949.490267	-0.057848	-2.7521E-05	4.1163	0.0019583	4.0584	0.0019308	475.7547431105115	15.038	0.16992	14.974	14.871	15.041	-0.064413	-0.02182	0.0020262	NaN	26.341	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29877			49582	7974	28312	28313							0.013501213001745782
TSELSSLSGA	10	Unmodified	_TSELSSLSGA_					0	0	0			REV__ENSG00000150394|ENST00000577390|CDH8	REV__ENSG00000150394|ENST00000577390|CDH8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.23492431640625	2	476.235104	950.455655	-0.1401	-6.6721E-05	0.22824	0.00010869	0.088135	4.1973E-05	476.23510157469804	15.077	0.83435	15.077	14.9	15.734	0					40	28	3	0	0	0	0.11081	1	925	925		45.7	1.9272	1	156790	+		49583	16495	28313	28314	60626	60626					-0.021554233069309703
TSERMTSLFI	10	Unmodified	_TSERMTSLFI_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8;DNAH8|p.E1942Vfs*36|1|0.06|ENSG00000124721|chr6:38864037-38864038|-/TGATAAAGAGAGGTTTAATTATTTGTAT|frameshift_variant	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.802734375	2	592.802631	1183.59071	0.36337	0.00021541	-0.38669	-0.00022923	-0.023323	-1.3826E-05	592.8022604584721	74.115	2.4996	74.167	73.008	75.508	0.052368					233	89	3	0	0	0	0.3258	1	19002	19002		17.113	17.113	1	1313800			49584	3175	28314	28315	60627	60627					0.00625733563151698
TSERMTSLFI	10	Unmodified	_TSERMTSLFI_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8;DNAH8|p.E1942Vfs*36|1|0.06|ENSG00000124721|chr6:38864037-38864038|-/TGATAAAGAGAGGTTTAATTATTTGTAT|frameshift_variant	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.8024291992188	2	592.802631	1183.59071	0.45822	0.00027163	-0.49852	-0.00029552	-0.040297	-2.3888E-05	592.8022078575605	74.159	2.7132	74.129	72.9	75.613	-0.030655					245	98	3	0	0	0	0.3258	1	19239	19239		17.113	17.113	1	1775400			49585	3175	28314	28315	60628	60628					0.00625733563151698
TSEVDSELL	9	Unmodified	_TSEVDSELL_					0	0	0			REV__ENST00000467009.1_1_1:155754962-155791309:-|nuORF	REV__ENST00000467009.1_1_1:155754962-155791309:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.30419921875	2	496.742762	991.470971	0.74095	0.00036806	0.7928	0.00039382	1.5337	0.00076188	496.7428796911133	74.797	0.46887	74.797	74.6	75.069	0					22	16	2	0	0	0	0.2451	1	19190	19190		15.847	0	1	302790	+		49586	14926	28315	28316	60629	60629					-0.025105565097419458
TSEVNKEFP	9	Unmodified	_TSEVNKEFP_					0	0	0			REV__ENSG00000204822|ENST00000258105|MRPL53	REV__ENSG00000204822|ENST00000258105|MRPL53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7588500976562	2	525.758746	1049.50294	0.38932	0.00020469	-0.050667	-2.6638E-05	0.33866	0.00017805	525.758712450045	19.554	2.1427	19.554	18.71	20.853	0					175	77	4	0	0	0	0.14076	3	2397	2397;2444;2508		32.305	0	1	2208600	+		49587	18965	28316	28317	60630;60631;60632	60630					-0.019831440359666885
TSEVNKEFP	9	Unmodified	_TSEVNKEFP_					0	0	0			REV__ENSG00000204822|ENST00000258105|MRPL53	REV__ENSG00000204822|ENST00000258105|MRPL53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7589721679688	2	525.758746	1049.50294	0.4998	0.00026277	-0.16976	-8.9255E-05	0.33003	0.00017352	525.7586768252038	19.76	2.0681	19.644	18.762	20.83	-0.11592					211	73	6	0	0	0	0.23007	3	2494	2494;2547;2602		19.257	0	1	2550200	+		49588	18965	28316	28317	60633;60634;60635	60633					-0.019831440359666885
TSEVNKEFP	9	Unmodified	_TSEVNKEFP_					0	0	0			REV__ENSG00000204822|ENST00000258105|MRPL53	REV__ENSG00000204822|ENST00000258105|MRPL53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7587890625	2	525.758746	1049.50294	0.60796	0.00031964	-0.27247	-0.00014326	0.33549	0.00017639	525.7586050180925	19.697	1.9523	19.641	18.931	20.883	-0.055693					194	69	5	0	0	0	0.18803	4	2428	2428;2480;2524;2580		25.399	0	1	2513500	+		49589	18965	28316	28317	60636;60637;60638;60639	60636					-0.019831440359666885
TSFINEYLK	9	Unmodified	_TSFINEYLK_					0	0	0		nc|ENSG00000136527|P62995-2|TRA2B	nc|ENSG00000136527|P62995-2|TRA2B	nc|ENSG00000136527|P62995-2|TRA2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7923583984375	2	557.792589	1113.57063	0.25224	0.0001407	0.73146	0.000408	0.9837	0.0005487	557.7928971020453	55.37	0.82013	55.37	55.061	55.882	0					64	29	3	0	0	0	0.0048951	2	13199	13199;13251		87.258	52.326	1	1353500			49590	12717	28317	28318	60640;60641	60640					0.018383058948302278
TSFINEYLK	9	Unmodified	_TSFINEYLK_					0	0	0		nc|ENSG00000136527|P62995-2|TRA2B	nc|ENSG00000136527|P62995-2|TRA2B	nc|ENSG00000136527|P62995-2|TRA2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.792724609375	2	557.792589	1113.57063	0.5452	0.00030411	0.51336	0.00028635	1.0586	0.00059046	557.7927599637118	55.314	0.74332	55.385	55.085	55.828	0.070885					60	27	3	0	0	0	0.0019382	2	13172	13172;13218		110.79	65.093	1	1419200			49591	12717	28317	28318	60642;60643	60642					0.018383058948302278
TSFINEYLK	9	Unmodified	_TSFINEYLK_					0	0	0		nc|ENSG00000136527|P62995-2|TRA2B	nc|ENSG00000136527|P62995-2|TRA2B	nc|ENSG00000136527|P62995-2|TRA2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7926025390625	2	557.792589	1113.57063	0.31004	0.00017294	0.74842	0.00041746	1.0585	0.0005904	557.7930181266919	55.579	0.78812	55.559	55.29	56.078	-0.019077					66	28	4	0	0	0	0.0048951	2	13252	13252;13304		87.258	49.083	1	1887400			49592	12717	28317	28318	60644;60645	60644					0.018383058948302278
TSFLSLFPK	9	Unmodified	_TSFLSLFPK_					0	0	0		nc|ENSG00000159788|O14924-5|RGS12;nc|ENSG00000159788|O14924-7|RGS12;nc|ENSG00000159788|O14924-6|RGS12	nc|ENSG00000159788|O14924-5|RGS12	nc|ENSG00000159788|O14924-5|RGS12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.313720703125	2	520.294768	1038.57498	0.35265	0.00018348	-0.63041	-0.000328	-0.27776	-0.00014452	520.7958390048404	70.157	0.41977	70.223	70.051	70.471	0.066048					22	14	2	0	0	0	0.19686	1	17779	17779		31.268	10.815	1	104720			49593	12786	28318	28319	60646	60646					0.05723815108422059
TSFSFQKEK	9	Unmodified	_TSFSFQKEK_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.282470703125	2	551.282389	1100.55022	0.28163	0.00015526	0.31256	0.00017231	0.59419	0.00032757	551.2823977391745	25.272	0.49894	25.272	25.064	25.562	0					37	16	3	0	0	0	0.19888	1	4010	4010		32.037	12.676	1	194270			49594	2882	28319	28320	60647	60647					0.003971352350617963
TSFSFQKEK	9	Unmodified	_TSFSFQKEK_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.282470703125	2	551.282389	1100.55022	0.1711	9.4323E-05	0.40644	0.00022406	0.57754	0.00031839	551.282536394032	25.394	0.57486	25.338	25.102	25.677	-0.055929					40	19	3	0	0	0	0.22179	1	4029	4029		26.021	11.615	1	220930			49595	2882	28319	28320	60648	60648					0.003971352350617963
TSFSFQKEK	9	Unmodified	_TSFSFQKEK_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.2826538085938	2	551.282389	1100.55022	0.0055264	3.0466E-06	0.47796	0.00026349	0.48348	0.00026654	551.2826265236924	25.348	0.52753	25.316	25.072	25.599	-0.03141					33	18	2	0	0	0	0.032589	3	4023	4009;4023;4075		59.368	38.954	1	243060			49596	2882	28319	28320	60649;60650;60651	60650					0.003971352350617963
TSFVAYKVG	9	Unmodified	_TSFVAYKVG_					0	0	0			REV__ENSG00000174607|ENST00000310836|UGT8	REV__ENSG00000174607|ENST00000310836|UGT8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8002014160156	2	486.263468	970.512382	0.65539	0.00031869	-1.3624	-0.00066248	-0.70701	-0.00034379	486.2625191878007	77.827	0.64349	77.827	77.526	78.169	0					35	23	2	0	0	0	0.24913	1	20205	20205		7.9102	0	1	278670	+		49597	17844	28320	28321	60652	60652					0.025946690402406603
TSFVAYKVG	9	Unmodified	_TSFVAYKVG_					0	0	0			REV__ENSG00000174607|ENST00000310836|UGT8	REV__ENSG00000174607|ENST00000310836|UGT8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80029296875	2	486.263468	970.512382	0.80788	0.00039284	-1.5079	-0.00073325	-0.70005	-0.00034041	486.2624420405024	77.836	0.52137	77.804	77.599	78.121	-0.031334					37	18	3	0	0	0	0.24913	1	20164	20164		12.532	0	1	403240	+		49598	17844	28320	28321	60653	60653					0.025946690402406603
TSGITFHIL	9	Unmodified	_TSGITFHIL_					0	0	0		ENST00000491061.1_1_7:151815642-151815978:+|nuORF	ENST00000491061.1_1_7:151815642-151815978:+|nuORF	ENST00000491061.1_1_7:151815642-151815978:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7767028808594	2	494.776742	987.538931	0.5997	0.00029672	-0.24239	-0.00011993	0.35731	0.00017679	494.77656757440616	60.504	0.98033	60.504	60.175	61.155	0					90	35	4	0	0	0	0.021303	1	14919	14919		63.563	9.9873	1	10838000			49599	11172	28321	28322	60654	60654					0.0446635793156247
TSGITFHIL	9	Unmodified	_TSGITFHIL_					0	0	0		ENST00000491061.1_1_7:151815642-151815978:+|nuORF	ENST00000491061.1_1_7:151815642-151815978:+|nuORF	ENST00000491061.1_1_7:151815642-151815978:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7764892578125	2	494.776742	987.538931	0.49837	0.00024658	-0.17818	-8.8161E-05	0.32019	0.00015842	494.7765932812497	60.408	0.82829	60.504	60.18	61.008	0.095093					88	29	4	0	0	0	0.021303	1	14890	14890		63.563	16.642	1	9156700			49600	11172	28321	28322	60655	60655					0.0446635793156247
TSGITFHIL	9	Unmodified	_TSGITFHIL_					0	0	0		ENST00000491061.1_1_7:151815642-151815978:+|nuORF	ENST00000491061.1_1_7:151815642-151815978:+|nuORF	ENST00000491061.1_1_7:151815642-151815978:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.3030090332031	2	494.776742	987.538931	0.61188	0.00030274	-0.25261	-0.00012499	0.35926	0.00017775	494.7765576855694	60.497	0.74711	60.487	60.169	60.917	-0.010452					91	27	4	0	0	0	0.089551	1	14910	14910		53.576	0	1	9844800			49601	11172	28321	28322	60656	60656					0.0446635793156247
TSGRRFNK	8	Unmodified	_TSGRRFNK_					0	0	0			REV__nc|ENSG00000139220|O75334-6|PPFIA2	REV__nc|ENSG00000139220|O75334-6|PPFIA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.66888427734375	2	483.267407	964.520262	0.15546	7.5128E-05	-3.6216	-0.0017502	-3.4661	-0.001675	483.2655597671201	33.296	0.28339	33.362	33.132	33.415	0.0667					11	9	2	0	0	0	0.34131	1	6383	6383		7.9102	0.62092	1	86813	+		49602	15977	28322	28323	60657	60657					0.036582410803816856
TSGSGGCPPA	10	Unmodified	_TSGSGGCPPA_					0	0	0		ENSG00000176399|ENST00000325870|DMRTA1	ENSG00000176399|ENST00000325870|DMRTA1	ENSG00000176399|ENST00000325870|DMRTA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.1890869140625	2	417.176535	832.338517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.445	1	43.523	43.023	44.023	0.077515								0	0	0	0.36787	1	9542	9542		7.2892	1.5288	1				49603	6926	28323	28324	60658	60658					-0.08435859727546813
TSGSPATPLK	10	Unmodified	_TSGSPATPLK_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7638854980469	2	479.763832	957.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.823	1	21.722	21.222	22.222	-0.10034								0	0	0	0.34683	1	2960	2960		16.149	3.9084	1				49604	1088	28324	28325	60659	60659					0.03265463689297121
TSGSPATPLK	10	Unmodified	_TSGSPATPLK_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7641296386719	2	479.763832	957.513111	0.20413	9.7935E-05	-0.39943	-0.00019163	-0.1953	-9.3697E-05	479.7639562580561	21.75	0.4708	21.701	21.435	21.905	-0.049377					22	16	2	0	0	0	0.21126	1	2950	2950		31.268	15.119	1	95669			49605	1088	28324	28325	60660	60660					0.03265463689297121
TSHASLTSL	9	Unmodified	_TSHASLTSL_					0	0	0			REV__ENSG00000230178|ENST00000456475|OR4F3	REV__ENSG00000230178|ENST00000456475|OR4F3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.9343566894531	2	458.740357	915.46616	0.27064	0.00012415	0.10695	4.9063E-05	0.37759	0.00017322	458.7403658474764	44.628	0.48824	44.697	44.463	44.952	0.068569					27	17	2	0	0	0	0.1854	1	9912	9912		25.399	0	1	209200	+		49606	17930	28325	28326	60661	60661					0.005046041381433497
TSHNRIAMIIL	11	Unmodified	_TSHNRIAMIIL_					0	0	0			REV__ENSG00000184933|ENST00000641196|OR6A2	REV__ENSG00000184933|ENST00000641196|OR6A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.5824890136719	3	423.576302	1267.70708	0.21197	8.9784E-05	-1.607	-0.00068068	-1.395	-0.0005909	423.5757723067319	37.753	0.18	37.753	37.587	37.767	0					6	5	2	0	0	0	0.3322	1	7776	7776		4.7159	2.0847	1	60877	+		49607	18340	28326	28327	60662	60662					0.08393096853728821
TSHPQELKV	9	Unmodified	_TSHPQELKV_					0	0	0		ENST00000460696.1_1_1:5925137-5925323:-|nuORF	ENST00000460696.1_1_1:5925137-5925323:-|nuORF	ENST00000460696.1_1_1:5925137-5925323:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.766845703125	2	519.782556	1037.55056	0.51259	0.00026643	0.13564	7.0506E-05	0.64823	0.00033694	519.7827595080801	32.604	0.44029	32.659	32.45	32.891	0.055309					37	15	3	0	0	0	0.23767	1	6243	6243		18.146	2.2992	1	370350			49608	10735	28327	28328	60663	60663					0.0332855495489639
TSHPQELKV	9	Unmodified	_TSHPQELKV_					0	0	0		ENST00000460696.1_1_1:5925137-5925323:-|nuORF	ENST00000460696.1_1_1:5925137-5925323:-|nuORF	ENST00000460696.1_1_1:5925137-5925323:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	519.782556	1037.55056	0.53275	0.00027691	0.61892	0.0003217	1.1517	0.00059862	519.7828745631159	32.708	0.42582	32.708	32.529	32.955	0	0.019686	0.00032247	NaN	18.146	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403350			49609	10735	28327	28328							0.0332855495489639
TSIAALTLI	9	Unmodified	_TSIAALTLI_					0	0	0		nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	nc|ENSG00000017260|P98194-4|ATP2C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.24188232421875	2	451.781493	901.548434	-0.017832	-8.0563E-06	0.89913	0.00040621	0.88129	0.00039815	451.78205961015294	34.25	0.81078	34.25	33.94	34.751	0					44	28	2	0	0	0	0.2451	1	6811	6811		15.847	1.0089	1	287900			49610	487	28328	28329	60664	60664					0.09372126217078858
TSIANLPKL	9	Unmodified	_TSIANLPKL_					0	0	0		ENSG00000139223|ENST00000266594|ANP32D;ENST00000495420.5_1_15:69079601-69113141:-|nuORF;ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A	ENSG00000139223|ENST00000266594|ANP32D	ENSG00000139223|ENST00000266594|ANP32D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7923889160156	2	478.792392	955.570232	0.25051	0.00011994	0.18401	8.8103E-05	0.43452	0.00020804	478.79241973078734	53.028	0.73005	53.028	52.656	53.386	0					43	26	2	0	0	0	0.0037449	1	12495	12495		96.367	54.527	1	881400			49611	4221	28329	28330	60665	60665					0.0906693096563913
TSIANLPKL	9	Unmodified	_TSIANLPKL_					0	0	0		ENSG00000139223|ENST00000266594|ANP32D;ENST00000495420.5_1_15:69079601-69113141:-|nuORF;ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A	ENSG00000139223|ENST00000266594|ANP32D	ENSG00000139223|ENST00000266594|ANP32D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7925109863281	2	478.792392	955.570232	0.52822	0.00025291	-0.24312	-0.00011641	0.2851	0.0001365	478.79219015336287	53.005	0.76706	53.061	52.637	53.404	0.056255					48	27	2	0	0	0	0.014206	1	12478	12478		72.968	38.566	1	774980			49612	4221	28329	28330	60666	60666					0.0906693096563913
TSIANLPKL	9	Unmodified	_TSIANLPKL_					0	0	0		ENSG00000139223|ENST00000266594|ANP32D;ENST00000495420.5_1_15:69079601-69113141:-|nuORF;ENST00000483551.6_1_15:69072422-69081590:-|nuORF;ENSG00000140350|ENST00000465139|ANP32A	ENSG00000139223|ENST00000266594|ANP32D	ENSG00000139223|ENST00000266594|ANP32D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7925720214844	2	478.792392	955.570232	0.30757	0.00014726	0.10451	5.0037E-05	0.41208	0.0001973	478.79232995195247	53.158	0.71937	53.148	52.708	53.427	-0.0096054					43	26	2	0	0	0	0.020233	1	12490	12490		63.961	34.879	1	738390			49613	4221	28329	28330	60667	60667					0.0906693096563913
TSIAPLLEK	9	Unmodified	_TSIAPLLEK_					0	0	0		ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.29278564453125	2	486.292225	970.569897	0.22879	0.00011126	-0.14943	-7.2669E-05	0.079354	3.8589E-05	486.29241846367705	43.528	1.7052	43.528	43.034	44.739	0					185	62	5	0	0	0	0.0010968	2	9565	9565;9613		121.53	21.735	1	20231000			49614	3345	28330	28331	60668;60669	60668					0.08343511245811897
TSIAPLLEK	9	Unmodified	_TSIAPLLEK_					0	0	0		ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2926330566406	2	486.292225	970.569897	0.37906	0.00018433	-0.17067	-8.2995E-05	0.20839	0.00010134	486.29248047108206	43.422	1.6992	43.499	43.075	44.774	0.077515					172	62	5	0	0	0	0.00051734	2	9579	9534;9579		128.93	10.754	1	21436000			49615	3345	28330	28331	60670;60671	60671					0.08343511245811897
TSIAPLLEK	9	Unmodified	_TSIAPLLEK_					0	0	0		ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2930603027344	2	486.292225	970.569897	0.35499	0.00017263	-0.045405	-2.208E-05	0.30958	0.00015055	486.2925642130872	43.366	1.78	43.45	42.978	44.758	0.083996					182	65	5	0	0	0	0.001957	3	9509	9509;9552;9602		110.55	21.599	1	21561000			49616	3345	28330	28331	60672;60673;60674	60672					0.08343511245811897
TSIAPLLEK	9	Unmodified	_TSIAPLLEK_					0	0	0		ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.26348876953125	2	486.292225	970.569897	0.4943	0.00024037	-1.7452	-0.0008487	-1.2509	-0.00060832	486.291469382241	44.772	0.18826	44.847	44.723	44.911	0.075047					10	6	2	0	0	0	0.17611	1	9960	9960		26.884	1.4843	1	123620			49617	3345	28330	28331	60675	60675					0.08343511245811897
TSIAQLKVV	9	Unmodified	_TSIAQLKVV_					0	0	0		ENSG00000123349|ENST00000334478|PFDN5;ENST00000550069.1_1_12:53689351-53689733:+|nuORF;nc|ENSG00000123349|Q99471-2|PFDN5;ENST00000551223.5_1_12:53689351-53690320:+|nuORF	ENSG00000123349|ENST00000334478|PFDN5	ENSG00000123349|ENST00000334478|PFDN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.27734375	2	479.800217	957.585882	0.43581	0.0002091	-0.037074	-1.7788E-05	0.39873	0.00019131	479.80031529397417	47.688	0.30426	47.688	47.519	47.823	0					15	10	2	0	0	0	0.18123	1	10858	10858		34.402	9.0024	1	213680			49618	3099	28331	28332	60676	60676					0.10539217482710228
TSIILIALK	9	Unmodified	_TSIILIALK_					0	0	0			REV__ENST00000370050.9_1_6:75965595-75965643:-|nuORF	REV__ENST00000370050.9_1_6:75965595-75965643:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.30535888671875	2	486.328611	970.642668	0.12525	6.0914E-05	-1.9528	-0.00094972	-1.8276	-0.0008888	486.32747534624167	69.244	0.22607	69.244	69.201	69.428	0					11	7	2	0	0	0	0.25526	1	17497	17497		4.3292	0	1	130100	+		49619	20371	28332	28333	60677	60677					0.15617265039225003
TSILKRQK	8	Unmodified	_TSILKRQK_					0	0	0		ENSG00000110925|ENST00000228515|CSRNP2	ENSG00000110925|ENST00000228515|CSRNP2	ENSG00000110925|ENST00000228515|CSRNP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.958984375	2	487.311284	972.608014	0.28245	0.00013764	-2.1295	-0.0010377	-1.847	-0.00090007	487.31024695179417	91.491	0.21524	91.581	91.52	91.736	0.090675					19	16	2	0	0	0	0.34337	1	24268	24268		0.6015	0.076735	1	80434			49620	2339	28333	28334	60678	60678					0.12061441951129837
TSILLQYLA	9	Unmodified	_TSILLQYLA_					0	0	0		ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-4|CLCN2;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.8271789550781	2	511.30005	1020.58555	0.43083	0.00022028	-2.9295	-0.0014979	-2.4987	-0.0012776	511.29989712398947	49.553	0.72952	49.553	49.164	49.894	0					60	26	4	0	0	0	0.11486	1	11432	11432		39.957	1.9833	1	410830			49621	2589	28334	28335	60679	60679					0.07607797762841528
TSILLQYLA	9	Unmodified	_TSILLQYLA_					0	0	0		ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-4|CLCN2;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.8273010253906	2	511.30005	1020.58555	0.23347	0.00011937	-3.0151	-0.0015416	-2.7816	-0.0014222	511.2999290630426	49.519	0.66646	49.564	49.238	49.905	0.044891					45	22	3	0	0	0	0.1524	1	11401	11401		39.957	1.7818	1	414020			49622	2589	28334	28335	60680	60680					0.07607797762841528
TSILLQYLA	9	Unmodified	_TSILLQYLA_					0	0	0		ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-4|CLCN2;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.8272705078125	2	511.30005	1020.58555	0.14451	7.3887E-05	-1.9952	-0.0010201	-1.8507	-0.00094624	511.3002058761793	49.51	0.62078	49.543	49.24	49.861	0.032043					45	20	3	0	0	0	0.11486	1	11380	11380		48.346	12.219	1	331870			49623	2589	28334	28335	60681	60681					0.07607797762841528
TSILQVVFTGL	11	Unmodified	_TSILQVVFTGL_					0	0	0			REV__nc|ENSG00000070961|P20020-6|ATP2B1	REV__nc|ENSG00000070961|P20020-6|ATP2B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3432006835938	2	589.344989	1176.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.558	1	81.534	81.034	82.034	-0.02404								0	0	0	0.35034	1	21232	21232		8.1555	2.4237	1		+		49624	22895	28335	28336	60682	60682					0.09415427371436635
TSILQVVFTGL	11	Unmodified	_TSILQVVFTGL_					0	0	0			REV__nc|ENSG00000070961|P20020-6|ATP2B1	REV__nc|ENSG00000070961|P20020-6|ATP2B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3430786132812	2	589.344989	1176.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.704	1	81.68	81.18	82.18	-0.02404								0	0	0	0.35034	1	21277	21277		8.1555	2.4237	1		+		49625	22895	28335	28336	60683	60683					0.09415427371436635
TSILRRLKHF	10	Unmodified	_TSILRRLKHF_					0	0	0		nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-8|SYNE1;ENST00000460912.6_1_6:152443573-152489284:-|nuORF;nc|ENSG00000131018|Q8NF91-9|SYNE1;nc|ENSG00000131018|Q8NF91-3|SYNE1;nc|ENSG00000131018|Q8NF91-11|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.5824890136719	3	424.262935	1269.76697	0.10158	4.3096E-05	2.3717	0.0010062	2.4733	0.0010493	424.2637132644481	37.849	0.56162	37.849	37.587	38.149	0					29	19	3	0	0	0	0.32051	1	7776	7776		1.9064	0.69154	1	144490			49626	3536	28336	28337	60684	60684					0.14288155579242812
TSIPIVFH	8	Unmodified	_TSIPIVFH_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ABCA10|p.S690Qfs*2|1|0.25|ENSG00000154263|chr17:69190421-69190421|A/-|frameshift_variant;nc|ENSG00000154263|Q8WWZ4-5|ABCA10;nc|ENSG00000154263|Q8WWZ4-4|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7933044433594	2	457.260728	912.506903	0.5156	0.00023576	-1.1008	-0.00050334	-0.58517	-0.00026757	457.25986023910065	33.573	0.85749	33.64	33.154	34.012	0.06636					54	30	3	0	0	0	0.32778	1	6385	6385		14.582	0	1	345930			49627	5117	28337	28338	60685	60685					0.04714990248419326
TSIPSIESMLS	11	Unmodified	_TSIPSIESMLS_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.7802124023438	2	582.794472	1163.57439	0.093874	5.4709E-05	-3.1246	-0.001821	-3.0307	-0.0017663	583.2948286610451	22.681	0.35871	22.593	22.352	22.711	-0.08761					14	12	2	0	0	0	0.42346	1	3243	3243		8.1555	0.67846	1	38758	+		49628	16073	28338	28339	60686	60686					-0.0008539239358924533
TSIPSIESMLS	11	Unmodified	_TSIPSIESMLS_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	582.794472	1163.57439	0.11648	6.7882E-05	-5.325	-0.0031034	-5.2085	-0.0030355	582.7912695404923	22.59	0.11711	22.59	22.505	22.622	0	-0.0015309	-0.00081845	NaN	8.1555	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22472	+		49629	16073	28338	28339							-0.0008539239358924533
TSIPSIESMLS	11	Unmodified	_TSIPSIESMLS_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	582.794472	1163.57439	0.093874	5.4709E-05	-3.1246	-0.001821	-3.0307	-0.0017663	583.2948286610451	22.681	0.35871	22.593	22.352	22.711	-0.08761	0.0015309	0.0017464	NaN	8.1555	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38758	+		49630	16073	28338	28339							-0.0008539239358924533
TSIRPDIL	8	Unmodified	_TSIRPDIL_					0	0	0		ENST00000562158.1_1_3:108895753-108896005:-|nuORF	ENST00000562158.1_1_3:108895753-108896005:-|nuORF	ENST00000562158.1_1_3:108895753-108896005:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2769775390625	2	457.768917	913.523281	0.30479	0.00013952	-0.17503	-8.0125E-05	0.12975	5.9397E-05	457.7688030376468	42.101	0.54456	42.192	41.896	42.441	0.091362					32	18	2	0	0	0	0.30503	1	9135	9135		23.148	2.6948	1	518290			49631	11919	28339	28340	60687	60687					0.06306071414530834
TSISRLNRHR	10	Unmodified	_TSISRLNRHR_					0	0	0		ENSG00000169131|ENST00000335815|ZNF354A;ENSG00000178338|ENST00000322434|ZNF354B	ENSG00000169131|ENST00000335815|ZNF354A	ENSG00000169131|ENST00000335815|ZNF354A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.9150695800781	3	413.90581	1238.6956	0.24756	0.00010246	0.40079	0.00016589	0.64835	0.00026835	414.2400125105926	32.477	0.38497	32.477	32.307	32.692	0					22	13	2	0	0	0	0.34325	1	6250	6250		8.4443	1.8209	1	110080			49632	6330	28340	28341	60688	60688					0.08580035874592795
TSKAIKAPHDF	11	Unmodified	_TSKAIKAPHDF_					0	0	0			REV__ENSG00000129315|ENST00000261900|CCNT1	REV__ENSG00000129315|ENST00000261900|CCNT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5437927246094	3	405.555784	1213.64552	0.026596	1.0786E-05	-1.19	-0.00048262	-1.1634	-0.00047183	405.55504951601114	35.987	0.4364	36.069	35.823	36.259	0.082359					20	15	2	0	0	0	0.33169	1	7231	7231		3.8459	0	1	244660	+		49633	15410	28341	28342	60689	60689					0.047244884260635445
TSKGKKMVDFV	11	Unmodified	_TSKGKKMVDFV_					0	0	0			REV__ENST00000486374.5_1_10:24873343-24884978:-|nuORF	REV__ENST00000486374.5_1_10:24873343-24884978:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.21185302734375	3	413.897041	1238.66929	0.10735	4.4432E-05	2.7445	0.001136	2.8519	0.0011804	413.897946151559	33.953	0.33117	34.02	33.907	34.239	0.066704					14	11	2	0	0	0	0.33149	1	6688	6688		4.4062	0	1	82666	+		49634	13110	28342	28343	60690	60690					0.05950585868231428
TSKGRQIRIVI	11	Unmodified	_TSKGRQIRIVI_					0	0	0			REV__ENSG00000144820|ENST00000273352|ADGRG7	REV__ENSG00000144820|ENST00000273352|ADGRG7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2698974609375	3	424.269978	1269.7881	0.017566	7.4529E-06	-0.24262	-0.00010294	-0.22505	-9.5483E-05	424.2697917746733	28.906	1.1927	28.906	28.64	29.833	0					114	42	4	0	0	0	0.4112	1	5142	5142		9.7643	0	1	1277400	+		49635	16262	28343	28344	60691	60691					0.1640012088810181
TSKGRQIRIVI	11	Unmodified	_TSKGRQIRIVI_					0	0	0			REV__ENSG00000144820|ENST00000273352|ADGRG7	REV__ENSG00000144820|ENST00000273352|ADGRG7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.26971435546875	3	424.269978	1269.7881	-0.1698	-7.204E-05	-0.11909	-5.0526E-05	-0.28889	-0.00012257	424.2698892612522	29.012	1.0746	29.026	28.699	29.773	0.013474					99	37	4	0	0	0	0.4112	1	5105	5105		9.7643	0	1	1427100	+		49636	16262	28343	28344	60692	60692					0.1640012088810181
TSKHLWKL	8	Unmodified	_TSKHLWKL_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.34979248046875	2	506.800552	1011.58655	0.22429	0.00011367	0.9272	0.00046991	1.1515	0.00058358	506.8012282633644	41.443	0.77327	41.533	40.902	41.676	0.090252					74	29	4	0	0	0	0.34218	1	8819	8819		9.3474	0.75416	1	1477700	+		49637	15815	28344	28345	60693	60693					0.08122056922411502
TSKILVSIN	9	Unmodified	_TSKILVSIN_					0	0	0			REV__ENST00000296161.8_1_3:122287663-122287708:+|nuORF	REV__ENST00000296161.8_1_3:122287663-122287708:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2870788574219	2	487.797675	973.580796	0.17927	8.7449E-05	-1.8285	-0.00089192	-1.6492	-0.00080447	487.79678406030575	38.299	0.59035	38.299	38.007	38.597	0					32	20	2	0	0	0	0.23767	1	7917	7917		18.146	3.3081	1	434830	+		49638	19788	28345	28346	60694	60694					0.09294913620090028
TSKISAEYIK	10	Unmodified	_TSKISAEYIK_					0	0	0			REV__nc|ENSG00000032219|P29374-3|ARID4A	REV__nc|ENSG00000032219|P29374-3|ARID4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3192138671875	2	570.318971	1138.62339	0.11735	6.6926E-05	0.40459	0.00023075	0.52194	0.00029767	570.3187854908017	45.976	0.68441	46.035	45.763	46.448	0.059837					47	24	3	0	0	0	0.23397	1	10294	10294		28.495	4.6934	1	785900	+		49639	13496	28346	28347	60695	60695					0.05962263957644609
TSKKKLFQ	8	Unmodified	_TSKKKLFQ_					0	0	0		ENST00000354752.5_1_9:99922575-99942308:-|nuORF;ENSG00000180071|ENST00000399703|ANKRD18A;nc|ENSG00000230453|A2A2Z9|ANKRD18B;ENSG00000230453|ENST00000684830|ANKRD18B	ENST00000354752.5_1_9:99922575-99942308:-|nuORF	ENST00000354752.5_1_9:99922575-99942308:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.7499084472656	2	490.300384	978.586216	0.0075757	3.7144E-06	-1.9794	-0.00097049	-1.9718	-0.00096678	490.29962450097577	14.337	0.80822	14.232	13.873	14.681	-0.10466					36	27	2	0	0	0	0.344	1	773	773		2.5775	0	1	44995			49640	7164	28347	28348	60696	60696					0.0960663720256889
TSKPPFHEL	9	Unmodified	_TSKPPFHEL_					0	0	0		nc|ENSG00000180815|Q6ZN16-2|MAP3K15;nc|ENSG00000180815|Q6ZN16-3|MAP3K15;ENST00000518578.5_1_X:19378869-19431499:-|nuORF;ENSG00000180815|ENST00000338883|MAP3K15;MAP3K15|p.E1259*|1|0.27|ENSG00000180815|chrX:19361498-19361499|-/A|frameshift_variant	nc|ENSG00000180815|Q6ZN16-2|MAP3K15	nc|ENSG00000180815|Q6ZN16-2|MAP3K15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2762451171875	2	528.279649	1054.54475	0.47265	0.00024969	0.84062	0.00044408	1.3133	0.00069377	528.2799479564914	46.93	0.72364	46.983	46.737	47.461	0.05257					65	26	3	0	0	0	0.11461	1	10540	10540		36.127	3.8215	1	3459500			49641	7203	28348	28349	60697	60697					0.0196545644323578
TSKQHRLKKI	10	Unmodified	_TSKQHRLKKI_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.21185302734375	3	413.594573	1237.76189	0.052118	2.1556E-05	2.7376	0.0011323	2.7897	0.0011538	413.5957034000853	34.057	0.69562	34.124	33.907	34.603	0.066704					29	24	2	0	0	0	0.32009	1	6688	6688		1.9064	0	1	66675			49642	8424	28349	28350	60698	60698					0.1525185171665271
TSKVLTAKG	9	Unmodified	_TSKVLTAKG_					0	0	0			REV__ENSG00000170248|ENST00000307296|PDCD6IP	REV__ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.24798583984375	2	452.776742	903.538931	0.055114	2.4954E-05	1.2395	0.00056123	1.2946	0.00058619	452.7772557313884	25.47	0.56312	25.47	25.12	25.683	0					29	18	2	0	0	0	0.24913	1	4070	4070		12.532	0.89125	1	80934	+		49643	17567	28350	28351	60699	60699					0.0833035793154977
TSKVQVAV	8	Unmodified	_TSKVQVAV_					0	0	0		ENST00000469653.5_1_9:91977319-91982044:-|nuORF;ENST00000492386.5_1_9:91977319-91992066:-|nuORF;nc|ENSG00000187764|Q92854-2|SEMA4D	ENST00000469653.5_1_9:91977319-91982044:-|nuORF	ENST00000469653.5_1_9:91977319-91982044:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.2278747558594	2	416.25036	830.486168	0.071182	2.963E-05	-0.70958	-0.00029536	-0.6384	-0.00026573	416.2499637436684	30.113	0.72952	30.113	29.718	30.448	0					54	25	3	0	0	0	0.3433	1	5415	5415		6.2058	0.47393	1	394470			49644	10858	28351	28352	60700	60700					0.06414399868754117
TSKVQVAV	8	Unmodified	_TSKVQVAV_					0	0	0		ENST00000469653.5_1_9:91977319-91982044:-|nuORF;ENST00000492386.5_1_9:91977319-91992066:-|nuORF;nc|ENSG00000187764|Q92854-2|SEMA4D	ENST00000469653.5_1_9:91977319-91982044:-|nuORF	ENST00000469653.5_1_9:91977319-91982044:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	416.25036	830.486168	-0.10899	-4.5367E-05	-0.54251	-0.00022582	-0.6515	-0.00027119	416.2500142313436	30.138	0.68896	30.166	29.787	30.476	0.027157	0.021083	0.00014823	NaN	10.074	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	407240			49645	10858	28351	28352							0.06414399868754117
TSKVVLNIE	9	Unmodified	_TSKVVLNIE_					0	0	0			REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.28839111328125	2	501.795132	1001.57571	0.27712	0.00013906	0.29215	0.0001466	0.56927	0.00028566	501.7952345306422	16.419	0.90493	16.357	16.038	16.943	-0.062532					78	31	4	0	0	0	0.33276	1	1296	1296		3.9444	0.3479	1	517500	+		49646	17329	28352	28353	60701	60701					0.07498609757465147
TSLADRIIT	9	Unmodified	_TSLADRIIT_					0	0	0			REV__nc|ENSG00000144283|Q99569-2|PKP4	REV__nc|ENSG00000144283|Q99569-2|PKP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7724304199219	2	495.284931	988.55531	0.1554	7.6968E-05	-3.2293	-0.0015994	-3.0739	-0.0015225	495.28340600446705	14.814	0.34512	14.704	14.56	14.905	-0.10981					27	11	3	0	0	0	0.25123	1	830	830		12.241	6.4802	1	91926	+		49647	16224	28353	28354	60702	60702					0.060574390976512404
TSLALKLWI	9	Unmodified	_TSLALKLWI_					0	0	0			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.81884765625	2	522.826235	1043.63792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.767	1	39.767	39.267	40.267	0								0	0	0	0.21726	1	8420	8420		16.942	4.4107	1		+		49648	17006	28354	28355	60703	60703					0.11784380896460789
TSLALKLWI	9	Unmodified	_TSLALKLWI_					0	0	0			REV__ENSG00000162753|ENST00000367714|SLC9C2	REV__ENSG00000162753|ENST00000367714|SLC9C2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8187866210938	2	522.826235	1043.63792	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.615	1	39.715	39.215	40.215	0.099407								0	0	0	0.21726	1	8366	8366		16.942	3.0362	1		+		49649	17006	28354	28355	60704	60704					0.11784380896460789
TSLALLGTVVA	11	Unmodified	_TSLALLGTVVA_					0	0	0			REV__nc|ENSG00000105677|Q9BVK8-2|TMEM147	REV__nc|ENSG00000105677|Q9BVK8-2|TMEM147	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.81884765625	2	522.818607	1043.62266	0.20188	0.00010555	0.0056837	2.9715E-06	0.20756	0.00010852	522.8186152958366	39.745	0.79667	39.745	39.43	40.226	0					64	28	3	0	0	0	0.28452	1	8420	8420		29.082	0	1	655110	+		49650	14479	28355	28356	60705	60705					0.10259469308630287
TSLARPKVTH	10	Unmodified	_TSLARPKVTH_					0	0	0			REV__ENSG00000171421|ENST00000505059|MRPL36	REV__ENSG00000171421|ENST00000505059|MRPL36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2952880859375	2	555.324922	1108.63529	0.43018	0.00023889	-0.94001	-0.00052201	-0.50983	-0.00028312	555.3242310403115	44.867	0.53707	44.942	44.697	45.234	0.075047					30	19	2	0	0	0	0.31358	1	10060	10060		9.3831	2.66	1	396480	+		49651	17634	28356	28357	60706	60706					0.08531925491524817
TSLDKFYRK	9	Unmodified	_TSLDKFYRK_					0	0	0		MAP2K3|p.H188Tfs*4|1|0.25|ENSG00000034152|chr17:21303227-21303227|C/-|frameshift_variant;nc|ENSG00000034152|P46734-2|MAP2K3;ENSG00000034152|ENST00000342679|MAP2K3;nc|ENSG00000034152|P46734-3|MAP2K3	MAP2K3|p.H188Tfs*4|1|0.25|ENSG00000034152|chr17:21303227-21303227|C/-|frameshift_variant	MAP2K3|p.H188Tfs*4|1|0.25|ENSG00000034152|chr17:21303227-21303227|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.31982421875	2	579.319306	1156.62406	0.20178	0.0001169	0.74019	0.0004288	0.94197	0.0005457	579.3193496779418	26.418	0.51354	26.379	26.178	26.692	-0.038671					26	17	2	0	0	0	0.22935	1	4359	4359		19.362	6.3195	1	192830			49652	566	28357	28358	60707	60707					0.05201103397348561
TSLDKFYRK	9	Unmodified	_TSLDKFYRK_					0	0	0		MAP2K3|p.H188Tfs*4|1|0.25|ENSG00000034152|chr17:21303227-21303227|C/-|frameshift_variant;nc|ENSG00000034152|P46734-2|MAP2K3;ENSG00000034152|ENST00000342679|MAP2K3;nc|ENSG00000034152|P46734-3|MAP2K3	MAP2K3|p.H188Tfs*4|1|0.25|ENSG00000034152|chr17:21303227-21303227|C/-|frameshift_variant	MAP2K3|p.H188Tfs*4|1|0.25|ENSG00000034152|chr17:21303227-21303227|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.3195190429688	2	579.319306	1156.62406	0.40325	0.00023361	0.60397	0.00034989	1.0072	0.0005835	579.3194067515155	26.497	0.40372	26.475	26.266	26.67	-0.022238					30	13	3	0	0	0	0.25714	1	4373	4373		15.248	5.1746	1	145240			49653	566	28357	28358	60708	60708					0.05201103397348561
TSLELFLL	8	Unmodified	_TSLELFLL_					0	0	0			REV__ENST00000509525.5_1_5:132534789-132560973:-|nuORF	REV__ENST00000509525.5_1_5:132534789-132560973:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2366027832031	2	468.276044	934.537535	0.70091	0.00032822	-3.4268	-0.0016047	-2.7259	-0.0012765	468.2743810993842	33.903	0.3059	33.97	33.814	34.12	0.06636					17	10	2	0	0	0	0.3366	1	6655	6655		18.135	0	1	169610	+		49654	13575	28358	28359	60709	60709					0.06764723842809417
TSLELFLL	8	Unmodified	_TSLELFLL_					0	0	0			REV__ENST00000509525.5_1_5:132534789-132560973:-|nuORF	REV__ENST00000509525.5_1_5:132534789-132560973:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.23681640625	2	468.276044	934.537535	0.076753	3.5942E-05	-3.1364	-0.0014687	-3.0596	-0.0014327	468.2746396305298	33.877	0.32794	33.944	33.799	34.127	0.066704					18	11	2	0	0	0	0.3366	1	6638	6638		18.135	0	1	147340	+		49655	13575	28358	28359	60710	60710					0.06764723842809417
TSLHILKLGF	10	Unmodified	_TSLHILKLGF_					0	0	0		ENST00000397728.7_1_21:47609133-47609427:-|nuORF	ENST00000397728.7_1_21:47609133-47609427:-|nuORF	ENST00000397728.7_1_21:47609133-47609427:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.7584228515625	2	564.842416	1127.67028	0.32914	0.00018591	2.6582	0.0015015	2.9873	0.0016874	564.8441677732837	63.476	0.30715	63.476	63.225	63.532	0					15	10	2	0	0	0	0.30586	1	15694	15694		13.906	9.9617	1	144000			49656	10144	28359	28360	60711	60711					0.11155168299455909
TSLHILKLGF	10	Unmodified	_TSLHILKLGF_					0	0	0		ENST00000397728.7_1_21:47609133-47609427:-|nuORF	ENST00000397728.7_1_21:47609133-47609427:-|nuORF	ENST00000397728.7_1_21:47609133-47609427:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.300048828125	2	564.842416	1127.67028	0.47529	0.00026846	2.8294	0.0015982	3.3047	0.0018666	564.8439774148484	63.33	0.2828	63.425	63.228	63.511	0.095722					16	9	2	0	0	0	0.31165	1	15615	15615		10.824	6.8795	1	143550			49657	10144	28359	28360	60712	60712					0.11155168299455909
TSLHLRGE	8	Unmodified	_TSLHLRGE_					0	0	0		ENST00000273067.4_1_2:217236562-217236706:-|nuORF	ENST00000273067.4_1_2:217236562-217236706:-|nuORF	ENST00000273067.4_1_2:217236562-217236706:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7486877441406	2	456.748516	911.482479	0.012882	5.884E-06	0.034024	1.554E-05	0.046906	2.1424E-05	456.74837973298236	19.235	2.0863	19.18	18.033	20.119	-0.055693					143	73	2	0	0	0	0.44734	1	2255	2255		6.7232	0	1	141660			49658	9093	28360	28361	60713	60713					0.02319730094905026
TSLILDTMAL	10	Unmodified	_TSLILDTMAL_					0	0	0			REV__ENSG00000181616|ENST00000322653|OR52H1	REV__ENSG00000181616|ENST00000322653|OR52H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8294067382812	2	539.29665	1076.57875	0.45525	0.00024551	1.4817	0.00079909	1.937	0.0010446	539.7980495027887	66.602	0.56355	66.588	66.278	66.842	-0.013596					38	20	2	0	0	0	0.26638	1	16657	16657		24.021	0	1	262080	+		49659	18157	28361	28362	60714	60714					0.04352116819973162
TSLILKLFV	9	Unmodified	_TSLILKLFV_					0	0	0			REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3258666992188	2	517.336436	1032.65832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.68	1	105.68	105.18	106.18	0								0	0	0	0.2575	1	27975	27975		3.9444	0	1		+		49660	23068	28362	28363	60715	60715					0.1432955155628406
TSLIPVPFP	9	Unmodified	_TSLIPVPFP_					0	0	0			REV__ENST00000525974.5_1_16:66583481-66583592:-|nuORF	REV__ENST00000525974.5_1_16:66583481-66583592:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.2920837402344	2	485.784036	969.553519	0.40491	0.0001967	0.45801	0.00022249	0.86292	0.00041919	485.7844290671772	83.388	0.59634	83.463	83.081	83.677	0.075569					34	21	2	0	0	0	0.24913	1	21699	21699		12.532	2.3482	1	152680	+		49661	21956	28363	28364	60716	60716					0.06752430079700389
TSLIPVPFP	9	Unmodified	_TSLIPVPFP_					0	0	0			REV__ENST00000525974.5_1_16:66583481-66583592:-|nuORF	REV__ENST00000525974.5_1_16:66583481-66583592:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2921142578125	2	485.784036	969.553519	0.49075	0.0002384	0.19864	9.6496E-05	0.68939	0.00033489	485.78433902367243	83.341	0.84605	83.32	83.027	83.873	-0.020584					49	35	2	0	0	0	0.23783	1	21752	21752		18.135	18.135	1	118960	+		49662	21956	28363	28364	60717	60717					0.06752430079700389
TSLKSSMWMG	10	Unmodified	_TSLKSSMWMG_					0	0	0		ENST00000505061.5_1_15:42105116-42107966:+|nuORF	ENST00000505061.5_1_15:42105116-42107966:+|nuORF	ENST00000505061.5_1_15:42105116-42107966:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.6444702148438	2	564.264827	1126.5151	0.095818	5.4067E-05	2.3223	0.0013104	2.4181	0.0013645	564.2658605187155	14.694	0.25877	14.589	14.422	14.681	-0.10466					10	8	2	0	0	0	0.31889	1	812	812		6.2058	1.8765	1	19391			49663	11309	28364	28365	60718	60718					-0.04309566888764493
TSLLGYFPNK	10	Unmodified	_TSLLGYFPNK_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.2960815429688	2	570.308406	1138.60226	0.26726	0.00015242	0.16263	9.275E-05	0.4299	0.00024517	570.3085669823395	57.654	0.67062	57.654	57.376	58.046	0					41	23	2	0	0	0	0.010092	2	13941	13941;13992		82.529	51.261	1	1325700			49664	2508	28365	28366	60719;60720	60719					0.038502986487856106
TSLLGYFPNK	10	Unmodified	_TSLLGYFPNK_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3085327148438	2	570.308406	1138.60226	0.38727	0.00022086	-0.98908	-0.00056408	-0.60182	-0.00034322	570.3084459455957	57.418	0.70496	57.504	57.24	57.945	0.085617					67	25	4	0	0	0	0.0059239	1	13863	13863		89.401	66.664	1	1746400			49665	2508	28365	28366	60721	60721					0.038502986487856106
TSLLGYFPNK	10	Unmodified	_TSLLGYFPNK_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.30859375	2	570.308406	1138.60226	0.15539	8.8618E-05	0.30316	0.0001729	0.45855	0.00026151	570.3085880582811	57.743	0.64404	57.725	57.416	58.06	-0.0172					54	23	3	0	0	0	0.0023784	4	13938	13938;13986;13994;14042		106.94	63.168	1	1374600			49666	2508	28365	28366	60722;60723;60724;60725	60722					0.038502986487856106
TSLLISRTAK	10	Unmodified	_TSLLISRTAK_					0	0	0			REV__ENST00000543621.6_3_10:101637047-101639587:-|nuORF	REV__ENST00000543621.6_3_10:101637047-101639587:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.335205078125	2	545.334956	1088.65536	0.10989	5.9929E-05	0.2111	0.00011512	0.32099	0.00017505	545.3347297740145	98.231	1.1824	98.231	97.794	98.976	0					245	137	3	0	0	0	0.38773	1	26246	26246		5.7319	5.7319	1	514710	+		49667	22149	28366	28367	60726	60726					0.11457676431473374
TSLLISRTAK	10	Unmodified	_TSLLISRTAK_					0	0	0			REV__ENST00000543621.6_3_10:101637047-101639587:-|nuORF	REV__ENST00000543621.6_3_10:101637047-101639587:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3348388671875	2	545.334956	1088.65536	0.41598	0.00022685	-0.2043	-0.00011141	0.21168	0.00011544	545.3345741888315	98.041	0.99688	98.102	97.736	98.733	0.061516					157	118	2	0	0	0	0.38773	2	26188	26188;26281		5.7319	5.7319	1	517170	+		49668	22149	28366	28367	60727;60728	60727					0.11457676431473374
TSLLISRTAK	10	Unmodified	_TSLLISRTAK_					0	0	0			REV__ENST00000543621.6_3_10:101637047-101639587:-|nuORF	REV__ENST00000543621.6_3_10:101637047-101639587:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3349609375	2	545.334956	1088.65536	0.58207	0.00031742	-0.39247	-0.00021403	0.1896	0.0001034	545.3345270242748	98.121	0.84117	98.114	97.844	98.685	-0.0068283					159	93	2	0	0	0	0.38773	1	26300	26300		5.7319	5.7319	1	611650	+		49669	22149	28366	28367	60729	60729					0.11457676431473374
TSLLLHLHFL	10	Unmodified	_TSLLLHLHFL_					0	0	0			REV__ENST00000596335.5_1_19:17384980-17387315:+|nuORF	REV__ENST00000596335.5_1_19:17384980-17387315:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8744506835938	2	597.355691	1192.69683	0.069049	4.1247E-05	1.6851	0.0010066	1.7542	0.0010479	597.856689977937	101.25	0.56844	101.25	100.93	101.5	0					173	78	3	0	0	0	0.32033	1	27037	27037		3.5965	0	1	143450	+		49670	22600	28367	28368	60730	60730					0.10818857190793096
TSLLRTSLSIS	11	Unmodified	_TSLLRTSLSIS_					0	0	0		nc|ENSG00000100150|O75140-5|DEPDC5	nc|ENSG00000100150|O75140-5|DEPDC5	nc|ENSG00000100150|O75140-5|DEPDC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.34326171875	2	589.342978	1176.6714	0.62675	0.00036937	-0.013766	-8.113E-06	0.61298	0.00036125	589.3429934702074	84.189	3.0513	84.189	83.2	86.251	0					514	117	5	0	0	0	0.42762	1	22509	22509		7.609	7.609	1	20500000			49671	12611	28368	28369	60731	60731					0.09013337877718186
TSLPSFVTK	9	Unmodified	_TSLPSFVTK_					0	0	0		ENSG00000188647|ENST00000340434|PTAR1;ENST00000467511.1_1_9:72346973-72349163:-|nuORF	ENSG00000188647|ENST00000340434|PTAR1	ENSG00000188647|ENST00000340434|PTAR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2763671875	2	490.276575	978.538597	0.093891	4.6033E-05	-0.86704	-0.00042509	-0.77315	-0.00037906	490.2763059634112	46.406	0.75972	46.406	46.029	46.789	0					59	27	3	0	0	0	0.048637	1	10461	10461		53.404	5.6553	1	1180600			49672	7764	28369	28370	60732	60732					0.04846938211721863
TSLPSFVTK	9	Unmodified	_TSLPSFVTK_					0	0	0		ENSG00000188647|ENST00000340434|PTAR1;ENST00000467511.1_1_9:72346973-72349163:-|nuORF	ENSG00000188647|ENST00000340434|PTAR1	ENSG00000188647|ENST00000340434|PTAR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2762451171875	2	490.276575	978.538597	0.29242	0.00014336	-1.5481	-0.00075902	-1.2557	-0.00061566	490.2762028159766	46.285	0.87284	46.345	45.951	46.824	0.059834					66	31	3	0	0	0	0.053988	1	10448	10448		51.415	7.5569	1	1265000			49673	7764	28369	28370	60733	60733					0.04846938211721863
TSLPSFVTK	9	Unmodified	_TSLPSFVTK_					0	0	0		ENSG00000188647|ENST00000340434|PTAR1;ENST00000467511.1_1_9:72346973-72349163:-|nuORF	ENSG00000188647|ENST00000340434|PTAR1	ENSG00000188647|ENST00000340434|PTAR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2761535644531	2	490.276575	978.538597	0.18738	9.187E-05	-1.8457	-0.00090489	-1.6583	-0.00081302	490.27621350025976	46.296	0.9427	46.361	45.976	46.919	0.065048					74	33	4	0	0	0	0.026579	1	10440	10440		61.602	9.3336	1	1293400			49674	7764	28369	28370	60734	60734					0.04846938211721863
TSLQFPQGVQK	11	Unmodified	_TSLQFPQGVQK_					0	0	0			REV__ENST00000511044.1_1_5:141242715-141245657:-|nuORF	REV__ENST00000511044.1_1_5:141242715-141245657:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.55926513671875	3	411.559305	1231.65609	0.065775	2.707E-05	-0.4722	-0.00019434	-0.40642	-0.00016727	411.5593489676228	36.049	1.9049	36.049	35.52	37.424	0					188	68	5	0	0	0	0.11813	2	7263	7263;7309		38.559	0.98074	1	15538000	+		49675	21803	28370	28371	60735;60736	60735					0.04952471080514442
TSLQFPQGVQK	11	Unmodified	_TSLQFPQGVQK_					0	0	0			REV__ENST00000511044.1_1_5:141242715-141245657:-|nuORF	REV__ENST00000511044.1_1_5:141242715-141245657:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5594482421875	3	411.559305	1231.65609	0.33587	0.00013823	-0.68695	-0.00028272	-0.35108	-0.00014449	411.5592875969908	35.92	1.9217	36.006	35.671	37.592	0.086246					186	69	5	0	0	0	0.1843	1	7256	7256		32.616	0.98074	1	16899000	+		49676	21803	28370	28371	60737	60737					0.04952471080514442
TSLQWNLFT	9	Unmodified	_TSLQWNLFT_					0	0	0			REV__ENST00000336665.9_1_2:237033049-237033157:+|nuORF	REV__ENST00000336665.9_1_2:237033049-237033157:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2953491210938	2	555.284931	1108.55531	0.58823	0.00032664	-0.62155	-0.00034514	-0.033318	-1.8501E-05	555.2847280238757	45.401	0.53681	45.461	45.166	45.703	0.059834					24	18	2	0	0	0	0.21905	1	10061	10061		16.942	16.942	1	328310	+		49677	20075	28371	28372	60738	60738					0.0053743909768400044
TSLREPLAK	9	Unmodified	_TSLREPLAK_					0	0	0		ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7595520019531	2	507.800749	1013.58694	0.27894	0.00014165	-0.3626	-0.00018413	-0.083656	-4.2481E-05	507.80055814772993	24.529	0.82845	24.456	23.935	24.763	-0.072559					56	27	3	0	0	0	0.23749	1	3733	3733		20.415	4.2654	1	176260			49678	1004	28372	28373	60739	60739					0.08069431851606623
TSLRLESFTSL	11	Unmodified	_TSLRLESFTSL_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.5626220703125	3	418.562715	1252.66632	0.1444	6.0441E-05	-0.21661	-9.0664E-05	-0.072205	-3.0222E-05	418.5625743611638	29.538	0.45015	29.538	29.324	29.774	0					35	15	3	0	0	0	0.40332	1	5311	5311		8.7518	3.5533	1	351470			49679	8733	28373	28374	60740	60740					0.050090340150973134
TSLRLESFTSL	11	Unmodified	_TSLRLESFTSL_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	418.562715	1252.66632	0.16762	7.0158E-05	-0.30885	-0.00012927	-0.14124	-5.9116E-05	418.56253815371093	29.454	0.5016	29.466	29.272	29.774	0.012264	-0.033626	-9.2432E-05	NaN	8.7518	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275930			49680	8733	28373	28374							0.050090340150973134
TSLRLESFTSL	11	Unmodified	_TSLRLESFTSL_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	418.562715	1252.66632	-0.068	-2.8462E-05	-0.022668	-9.488E-06	-0.090668	-3.795E-05	418.5626044509933	29.482	0.52396	29.495	29.3	29.824	0.013475	-0.004268	0.00026693	NaN	8.7518	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274260			49681	8733	28373	28374							0.050090340150973134
TSLRSLFLTTD	11	Unmodified	_TSLRSLFLTTD_					0	0	0			REV__nc|ENSG00000101191|Q9BTC0-1|DIDO1	REV__nc|ENSG00000101191|Q9BTC0-1|DIDO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.8971252441406	3	418.562715	1252.66632	0.16762	7.0158E-05	-0.30885	-0.00012927	-0.14124	-5.9116E-05	418.56253815371093	29.454	0.5016	29.466	29.272	29.774	0.012264					40	16	3	0	0	0	0.40332	1	5282	5282		5.8681	0	1	275930	+		49682	14253	28374	28375	60741	60741					0.05009034015074576
TSLSGPRVY	9	Unmodified	_TSLSGPRVY_					0	0	0			REV__nc|ENSG00000183621|Q7Z4V0-3|ZNF438	REV__nc|ENSG00000183621|Q7Z4V0-3|ZNF438	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2764892578125	2	490.263999	978.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.587	1	46.587	46.087	47.087	0								0	0	0	0.20639	1	10510	10510		20.454	1.0146	1		+		49683	18273	28375	28376	60742	60742					0.02332883409144415
TSLTQFWSHLA	11	Unmodified	_TSLTQFWSHLA_					0	0	0			REV__ENST00000447721.6_1_12:57881873-57905922:+|nuORF	REV__ENST00000447721.6_1_12:57881873-57905922:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8881530761719	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.611	1	20.611	20.111	21.111	0								0	0	0	0.34766	1	2591	2591		4.4062	0	1		+		49684	17355	28376	28377	60743	60743					0.007201845634881465
TSMKAPSLR	9	Unmodified	_TSMKAPSLR_					0	0	0			REV__ENSG00000153347|ENST00000283357|FAM81B	REV__ENSG00000153347|ENST00000283357|FAM81B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2939453125	2	495.773677	989.5328	0.64601	0.00032028	4.3242	0.0021438	4.9703	0.0024641	495.7757434197353	21.179	0.59753	21.069	20.836	21.434	-0.11003					28	20	2	0	0	0	0.24471	1	2775	2775		17.113	4.5813	1	91300	+		49685	16626	28377	28378	60744	60744					0.03761516428403411
TSMKAPSLR	9	Unmodified	_TSMKAPSLR_					0	0	0			REV__ENSG00000153347|ENST00000283357|FAM81B	REV__ENSG00000153347|ENST00000283357|FAM81B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	495.773677	989.5328	0.54366	0.00026953	4.4437	0.0022031	4.9873	0.0024726	495.77604454527625	20.968	0.62566	20.968	20.742	21.368	0	-0.0469	0.00011383	NaN	17.113	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70415	+		49686	16626	28377	28378							0.03761516428403411
TSMTRVIEV	9	Oxidation (M)	_TSM(Oxidation (M))TRVIEV_		TSM(1)TRVIEV		TSM(55)TRVIEV	0	0	1		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.27587890625	2	526.276249	1050.53795	0.75143	0.00039546	-0.35297	-0.00018576	0.39847	0.0002097	526.2759870264767	33.715	0.85071	33.715	33.426	34.277	0					68	30	3	0	0	0	0.043711	1	6544	6544		55.235	21.132	1	694670			49687	5753	28378	28379	60745	60745		681			0.014697755003453494
TSMTRVIEV	9	Oxidation (M)	_TSM(Oxidation (M))TRVIEV_		TSM(1)TRVIEV		TSM(65)TRVIEV	0	0	1		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2763061523438	2	526.276249	1050.53795	0.87882	0.0004625	-0.55312	-0.0002911	0.32569	0.0001714	526.276023716539	33.578	0.8231	33.645	33.38	34.203	0.06636					68	29	4	0	0	0	0.019446	1	6507	6507		64.927	30.824	1	843200			49688	5753	28378	28379	60746	60746		681			0.014697755003453494
TSMTRVIEV	9	Oxidation (M)	_TSM(Oxidation (M))TRVIEV_		TSM(1)TRVIEV		TSM(81)TRVIEV	0	0	1		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.2764282226562	2	526.276249	1050.53795	0.34136	0.00017965	0.35984	0.00018937	0.7012	0.00036902	526.2763493803939	33.563	0.71382	33.629	33.358	34.071	0.066704					58	25	3	0	0	0	0.0091837	2	6506	6506;6549		80.676	46.574	1	905350			49689	5753	28378	28379	60747;60748	60747		681			0.014697755003453494
TSNPVTTTK	9	Unmodified	_TSNPVTTTK_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7535705566406	2	474.753464	947.492375	-0.12497	-5.9332E-05	0.39169	0.00018595	0.26671	0.00012662	474.7536135851479	15.504	0.60601	15.504	15.1	15.706	0					46	20	3	0	0	0	0.24247	1	1018	1018		17.443	5.8023	1	150110			49690	5669	28379	28380	60749	60749					0.016528733096151882
TSNPVTTTK	9	Unmodified	_TSNPVTTTK_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.75372314453125	2	474.753464	947.492375	-0.014518	-6.8923E-06	0.17456	8.2871E-05	0.16004	7.5979E-05	474.75344399885296	15.57	0.54206	15.505	15.186	15.728	-0.064413					47	17	4	0	0	0	0.24584	1	1050	1050		17.443	5.8023	1	163440			49691	5669	28379	28380	60750	60750					0.016528733096151882
TSNRRPFA	8	Unmodified	_TSNRRPFA_					0	0	0			REV__ENST00000336418.8_1_15:90432313-90437221:-|nuORF	REV__ENST00000336418.8_1_15:90432313-90437221:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.75372314453125	2	474.754133	947.493713	0.036126	1.7151E-05	-1.6212	-0.00076965	-1.585	-0.0007525	474.75326372712146	15.582	0.6601	15.472	15.093	15.753	-0.10981					52	22	3	0	0	0	0.43302	1	1063	1063		11.64	0.14559	1	148750	+		49692	20071	28380	28381	60751	60751					0.017865521890371383
TSNYEQDQK	9	Unmodified	_TSNYEQDQK_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-2|FN1	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7467651367188	2	556.746367	1111.47818	0.024314	1.3537E-05	0.37679	0.00020978	0.40111	0.00022332	556.7467959853823	15.163	1.0734	15.163	14.819	15.892	0					104	37	5	0	0	0	0.31763	1	1008	1008		6.2058	0	1	910350			49693	2642	28381	28382	60752	60752					-0.07309823909326951
TSPASCMFER	10	Unmodified	_TSPASCMFER_					0	0	0		ENST00000567216.5_1_16:587614-588244:+|nuORF	ENST00000567216.5_1_16:587614-588244:+|nuORF	ENST00000567216.5_1_16:587614-588244:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.744384765625	2	564.744259	1127.47396	-0.062371	-3.5224E-05	-0.017697	-9.9945E-06	-0.080069	-4.5218E-05	564.744381647218	13.538	0.43117	13.538	13.336	13.767	0					28	14	3	0	0	0	0.34325	1	464	464		13.906	5.1606	1	117460			49694	11992	28382	28383	60753	60753					-0.08467327928224222
TSPKALVI	8	Unmodified	_TSPKALVI_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.9031066894531	2	414.763104	827.511654	0.31693	0.00013145	-0.4403	-0.00018262	-0.12337	-5.1168E-05	414.7628531736015	38.547	0.70292	38.638	38.373	39.076	0.090881					57	25	3	0	0	0	0.30241	1	8039	8039		32.305	3.8186	1	981880			49695	5054	28383	28384	60754	60754					0.09099874391165486
TSPKALVI	8	Unmodified	_TSPKALVI_					0	0	0		ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	ENSG00000153046|ENST00000397588|CDYL	ENSG00000153046|ENST00000397588|CDYL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	414.763104	827.511654	0.33913	0.00014066	-0.54976	-0.00022802	-0.21063	-8.7361E-05	414.76282850861264	38.554	0.72377	38.651	38.348	39.072	0.097527	0.0067344	-4.6179E-05	NaN	39.957	59	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	987710			49696	5054	28383	28384							0.09099874391165486
TSPLGNARL	9	Unmodified	_TSPLGNARL_					0	0	0		ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.27423095703125	2	464.764166	927.513779	-0.33099	-0.00015383	-0.047926	-2.2274E-05	-0.37892	-0.00017611	464.76414768317255	14.254	0.39316	14.254	14.055	14.448	0					25	13	2	0	0	0	0.31038	1	630	630		7.2892	2.0586	1	113660			49697	2588	28384	28385	60755	60755					0.047123031289856954
TSPLIRQLS	9	Unmodified	_TSPLIRQLS_					0	0	0		Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|134|1|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|134|1|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|134|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2665100097656	2	507.800749	1013.58694	0.36799	0.00018687	-0.65078	-0.00033047	-0.28279	-0.0001436	507.8003909305	26.417	0.93102	26.394	26.043	26.974	-0.022238					87	32	4	0	0	0	0.25202	1	4443	4443		10.824	1.4408	1	1355700			49698	12358	28385	28386	60756	60756					0.08069431851606623
TSPLRIVAL	9	Unmodified	_TSPLRIVAL_					0	0	0		nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1-3|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-6|PCDH15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.32086181640625	2	485.30821	968.601866	0.36244	0.0001759	0.56382	0.00027363	0.92626	0.00044952	485.3084621892473	57.098	0.83944	57.098	56.713	57.552	0					71	30	3	0	0	0	0.17277	1	13851	13851		27.629	0.40557	1	1393900			49699	4905;12756	28386	28387	60757	60757					0.11630923719621933
TSPLSLCSF	9	Unmodified	_TSPLSLCSF_					0	0	0			REV__chr7:102584338-102686033|145|14.07|0.0|20.42|-|2|TE_info:AluSg,AluSg_dup14918,Alu,SINE,donor,+,102686033,102686175|RASA4,None|2	REV__chr7:102584338-102686033|145|14.07|0.0|20.42|-|2|TE_info:AluSg,AluSg_dup14918,Alu,SINE,donor,+,102686033,102686175|RASA4,None|2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7502136230469	2	477.733686	953.452819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.655	1	77.624	77.124	78.124	-0.031334								0	0	0	0.19804	1	20039	20039		23.148	0	1		+		49700	13214	28387	28388	60758	60758					-0.02576969965457465
TSPLSLQV	8	Unmodified	_TSPLSLQV_					0	0	0			REV__ENST00000607652.5_1_1:150230352-150235277:+|nuORF	REV__ENST00000607652.5_1_1:150230352-150235277:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.7421569824219	2	422.742368	843.470183	-0.079789	-3.373E-05	-0.076923	-3.2518E-05	-0.15671	-6.6249E-05	422.74226992477895	75.317	0.89125	75.317	75.012	75.903	0					84	31	4	0	0	0	0.077335	2	19422	19422;19438		65.235	0	1	2578200	+		49701	15007	28388	28389	60759;60760	60759					0.042186936318557855
TSPLSLQV	8	Unmodified	_TSPLSLQV_					0	0	0			REV__ENST00000607652.5_1_1:150230352-150235277:+|nuORF	REV__ENST00000607652.5_1_1:150230352-150235277:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.7422180175781	2	422.742368	843.470183	0.0086942	3.6754E-06	-0.13435	-5.6794E-05	-0.12565	-5.3118E-05	422.742246381117	75.308	0.91663	75.36	74.998	75.915	0.052361					94	33	4	0	0	0	0.12475	2	19414	19414;19431		56.177	0	1	2230400	+		49702	15007	28388	28389	60761;60762	60761					0.042186936318557855
TSPLSLQV	8	Unmodified	_TSPLSLQV_					0	0	0			REV__ENST00000607652.5_1_1:150230352-150235277:+|nuORF	REV__ENST00000607652.5_1_1:150230352-150235277:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.7422180175781	2	422.742368	843.470183	0.19132	8.0881E-05	-0.3345	-0.00014141	-0.14318	-6.0528E-05	422.7421519404206	75.371	0.84949	75.339	75.031	75.881	-0.031479					86	31	4	0	0	0	0.035151	1	19412	19412		85.272	0	1	2397300	+		49703	15007	28388	28389	60763	60763					0.042186936318557855
TSPPPLMLR	9	Unmodified	_TSPPPLMLR_					0	0	0			REV__ENSG00000006283|ENST00000359106|CACNA1G	REV__ENSG00000006283|ENST00000359106|CACNA1G	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7747802734375	2	506.28642	1010.55829	0.27591	0.00013969	1.6941	0.00085769	1.97	0.00099738	506.287705731306	17.517	0.17249	17.457	17.358	17.53	-0.060429					7	5	2	0	0	0	0.25938	1	1648	1648		4.3292	0	1	13644	+		49704	13357	28389	28390	60764	60764					0.053429909508281526
TSQINKLEQVL	11	Unmodified	_TSQINKLEQVL_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.9141540527344	3	424.910115	1271.70852	0.0084878	3.6066E-06	1.4026	0.00059597	1.4111	0.00059957	424.9112902477372	32.766	3.2112	32.766	32.171	35.382	0					358	115	6	0	0	0	0.39244	1	6145	6145		12.228	0.052842	1	41338000	+		49705	19021	28390	28391	60765	60765					0.08353009423444746
TSQLRQNHIK	10	Unmodified	_TSQLRQNHIK_					0	0	0		nc|ENSG00000103154|Q7Z6G3-2|NECAB2;ENSG00000103154|ENST00000305202|NECAB2	nc|ENSG00000103154|Q7Z6G3-2|NECAB2	nc|ENSG00000103154|Q7Z6G3-2|NECAB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.21099853515625	3	408.898432	1223.67347	-0.17875	-7.3089E-05	-0.4171	-0.00017055	-0.59585	-0.00024364	408.8982300034099	18.133	0.66331	18.075	17.846	18.509	-0.058174					36	23	3	0	0	0	0.31994	1	1940	1940		5.4027	0	1	141120			49706	1813	28391	28392	60766	60766					0.07057811406161818
TSQMGRPG	8	Unmodified	_TSQMGRPG_					0	0	0		SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|39|1|anti-sense	SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|39|1|anti-sense	SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|39|1|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.1891784667969	2	417.200344	832.386136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.581	1	43.581	43.081	44.081	0								0	0	0	0.36336	1	9586	9586		8.5933	0	1				49707	23385	28392	28393	60767	60767					-0.036761607366884164
TSQRAVNR	8	Unmodified	_TSQRAVNR_					0	0	0		ENST00000371080.5_1_1:64608291-64608357:+|nuORF	ENST00000371080.5_1_1:64608291-64608357:+|nuORF	ENST00000371080.5_1_1:64608291-64608357:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2639465332031	2	466.25704	930.499526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.071	1	17.954	17.454	18.454	-0.11739								0	0	0	0.32762	1	1823	1823		24.674	0	1				49708	9809	28393	28394	60768	60768					0.03149650700709117
TSQRFLENG	9	Unmodified	_TSQRFLENG_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7589721679688	2	526.261988	1050.50942	0.54043	0.00028441	-3.0462	-0.0016031	-2.5058	-0.0013187	526.2605918400996	20.289	0.52966	20.289	20.18	20.709	0					27	18	2	0	0	0	0.25323	1	2508	2508		10.074	2.1638	1	90857			49709	2038	28394	28395	60769	60769					-0.013812060845793894
TSQRLLILI	9	Unmodified	_TSQRLLILI_					0	0	0			REV__nc|ENSG00000173226|Q15051-3|IQCB1	REV__nc|ENSG00000173226|Q15051-3|IQCB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8424682617188	2	528.842416	1055.67028	0.40055	0.00021183	-0.028758	-1.5209E-05	0.37179	0.00019662	528.8422408159462	46.182	0.70596	46.182	45.86	46.566	0					54	25	3	0	0	0	0.15219	1	10416	10416		30.637	6.8468	1	1193700	+		49710	17771	28395	28396	60770	60770					0.14467168299484
TSRHTPAQRY	10	Unmodified	_TSRHTPAQRY_					0	0	0			REV__ENST00000378347.2_1_16:89006201-89006603:+|nuORF	REV__ENST00000378347.2_1_16:89006201-89006603:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.8789367675781	3	406.210899	1215.61087	-0.40134	-0.00016303	2.2989	0.00093384	1.8976	0.00077081	406.21281461131	13.947	0.11816	13.881	13.831	13.949	-0.066068					5	3	2	0	0	0	0.31745	1	578	578		5.0475	0.64137	1	7327.5	+		49711	20518	28396	28397	60771	60771					0.01168665337991115
TSRMPTGR	8	Unmodified	_TSRMPTGR_					0	0	0			REV__ENST00000590803.5_1_16:4747031-4751860:-|nuORF	REV__ENST00000590803.5_1_16:4747031-4751860:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7480163574219	2	453.234719	904.454884	0.039514	1.7909E-05	3.158	0.0014313	3.1976	0.0014492	453.2380397340975	19.744	0.66062	19.744	19.325	19.986	0					54	23	3	0	0	0	0.34353	1	2334	2334		4.756	0	1	57484	+		49712	22556	28397	28398	60772	60772					-0.0011649643697637657
TSRRPGRTRW	10	Unmodified	_TSRRPGRTRW_					0	0	0			REV__ENST00000393902.3_X:151936155-151936361:-|nuORF	REV__ENST00000393902.3_X:151936155-151936361:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.855712890625	2	636.855244	1271.69593	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.633	1	94.631	94.131	95.131	-0.0020142								0	0	0	0.37664	1	25250	25250		3.5965	0	1		+		49713	20613	28398	28399	60773	60773					0.07095455594458144
TSRRPPQL	8	Unmodified	_TSRRPPQL_					0	0	0		nc|ENSG00000178031|Q8N6G6-4|ADAMTSL1;ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ENSG00000178031|ENST00000380548|ADAMTSL1	nc|ENSG00000178031|Q8N6G6-4|ADAMTSL1	nc|ENSG00000178031|Q8N6G6-4|ADAMTSL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2638244628906	2	477.777608	953.540663	0.085489	4.0845E-05	0.50262	0.00024014	0.58811	0.00028098	477.77813376968646	17.758	0.50202	17.758	17.598	18.1	0					23	16	2	0	0	0	0.34247	1	1685	1685		8.5933	0	1	45845			49714	7033	28399	28400	60774	60774					0.0620341174017085
TSRTWKRPSI	10	Unmodified	_TSRTWKRPSI_					0	0	0		ENST00000591843.1_1_19:13255226-13260604:-|nuORF	ENST00000591843.1_1_19:13255226-13260604:-|nuORF	ENST00000591843.1_1_19:13255226-13260604:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2349853515625	3	411.235045	1230.6833	-0.16426	-6.7549E-05	0.0061229	2.5179E-06	-0.15814	-6.5031E-05	411.235014106967	38.271	0.80946	38.271	38.034	38.844	0					73	28	4	0	0	0	0.35961	1	8031	8031		10.899	10.899	1	1511200			49715	12190	28400	28401	60775	60775					0.0771899941155425
TSSCQSLEH	9	Unmodified	_TSSCQSLEH_					0	0	0		nc|ENSG00000143469|Q8NB59-2|SYT14;nc|ENSG00000143469|Q8NB59-3|SYT14;nc|ENSG00000143469|Q8NB59|SYT14;ENSG00000143469|ENST00000367019|SYT14;nc|ENSG00000143469|Q8NB59-5|SYT14;nc|ENSG00000143469|Q8NB59-7|SYT14	nc|ENSG00000143469|Q8NB59-2|SYT14	nc|ENSG00000143469|Q8NB59-2|SYT14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2515563964844	2	496.211106	990.407659	0.3113	0.00015447	0.29903	0.00014838	0.61033	0.00030285	496.2110027463086	24.134	0.74723	24.134	23.857	24.605	0					32	25	2	0	0	0	0.25938	1	3723	3723		4.3292	1.7518	1	36053			49716	4517	28401	28402	60776	60776					-0.08792820498638321
TSSCQSLEH	9	Unmodified	_TSSCQSLEH_					0	0	0		nc|ENSG00000143469|Q8NB59-2|SYT14;nc|ENSG00000143469|Q8NB59-3|SYT14;nc|ENSG00000143469|Q8NB59|SYT14;ENSG00000143469|ENST00000367019|SYT14;nc|ENSG00000143469|Q8NB59-5|SYT14;nc|ENSG00000143469|Q8NB59-7|SYT14	nc|ENSG00000143469|Q8NB59-2|SYT14	nc|ENSG00000143469|Q8NB59-2|SYT14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.26507568359375	2	496.211106	990.407659	0.40603	0.00020148	-0.21262	-0.00010551	0.19341	9.5972E-05	496.2109200496298	24.156	0.55796	24.084	23.997	24.555	-0.072559					29	18	2	0	0	0	0.25202	1	3669	3669		10.824	6.0679	1	33918			49717	4517	28401	28402	60777	60777					-0.08792820498638321
TSSGSKDK	8	Unmodified	_TSSGSKDK_					0	0	0		ENSG00000171444|ENST00000408903|MCC;nc|ENSG00000171444|P23508|MCC	ENSG00000171444|ENST00000408903|MCC	ENSG00000171444|ENST00000408903|MCC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.23828125	2	405.203607	808.392661	-0.030469	-1.2346E-05	0.37002	0.00014993	0.33955	0.00013759	405.2029965174766	21.344	0.2626	21.344	21.282	21.545	0					8	8	2	0	0	0	0.34294	1	2798	2798		7.2892	1.5288	1	22508			49718	6540	28402	28403	60778	60778					-0.019199443043362407
TSSHNQLLL	9	Unmodified	_TSSHNQLLL_					0	0	0		nc|ENSG00000157211|Q5VXM1-1|CDCP2;ENSG00000157211|ENST00000530059|CDCP2	nc|ENSG00000157211|Q5VXM1-1|CDCP2	nc|ENSG00000157211|Q5VXM1-1|CDCP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7747497558594	2	506.774731	1011.53491	0.29713	0.00015058	-0.19611	-9.9385E-05	0.10102	5.1192E-05	506.7746196274244	17.271	0.61382	17.271	17.014	17.628	0					49	21	3	0	0	0	0.26031	1	1625	1625		3.5965	0.31518	1	225630			49719	5289	28403	28404	60779	60779					0.029602684378687627
TSSLTPLQQ	9	Unmodified	_TSSLTPLQQ_					0	0	0			REV__ENST00000307741.10_1_19:2813607-2814732:+|nuORF	REV__ENST00000307741.10_1_19:2813607-2814732:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.721923828125	2	487.761289	973.508025	0.26022	0.00012693	0.58027	0.00028303	0.84049	0.00040996	487.7615281611141	22.094	0.67816	21.994	21.744	22.422	-0.10034					37	24	2	0	0	0	0.24848	1	3075	3075		13.906	0	1	198330	+		49720	19872	28404	28405	60780	60780					0.02021159826665553
TSSPSILTL	9	Unmodified	_TSSPSILTL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.76080322265625	2	459.760758	917.506963	0.22214	0.00010213	-0.3845	-0.00017678	-0.16236	-7.4647E-05	459.76063348855627	65.486	0.65961	65.475	65.201	65.861	-0.011337					51	23	3	0	0	0	0.0085732	1	16347	16347		81.613	17.377	1	590320			49721	1820	28405	28406	60781	60781					0.04490945457757789
TSSSKITIPK	10	Unmodified	_TSSSKITIPK_					0	0	0		nc|ENSG00000144837|Q53H76-3|PLA1A;ENSG00000144837|ENST00000273371|PLA1A;nc|ENSG00000144837|Q53H76-4|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.313720703125	2	531.313689	1060.61282	0.37593	0.00019974	-0.09705	-5.1564E-05	0.27888	0.00014817	531.3135163023044	23.857	0.88564	23.857	23.569	24.454	0					90	30	4	0	0	0	0.29131	1	3566	3566		28.181	15.309	1	171440			49722	12739	28406	28407	60782	60782					0.0849428130322849
TSSSKITIPK	10	Unmodified	_TSSSKITIPK_					0	0	0		nc|ENSG00000144837|Q53H76-3|PLA1A;ENSG00000144837|ENST00000273371|PLA1A;nc|ENSG00000144837|Q53H76-4|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3135375976562	2	531.313689	1060.61282	0.33822	0.0001797	-0.042584	-2.2626E-05	0.29563	0.00015707	531.3136047651965	24.048	0.93941	23.976	23.53	24.47	-0.072559					89	31	4	0	0	0	0.30815	1	3602	3602		21.799	11.649	1	182330			49723	12739	28406	28407	60783	60783					0.0849428130322849
TSSSKITIPK	10	Unmodified	_TSSSKITIPK_					0	0	0		nc|ENSG00000144837|Q53H76-3|PLA1A;ENSG00000144837|ENST00000273371|PLA1A;nc|ENSG00000144837|Q53H76-4|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3137817382812	2	531.313689	1060.61282	0.50515	0.00026839	-0.24277	-0.00012899	0.26238	0.00013941	531.3135857562526	23.984	0.82635	23.945	23.651	24.478	-0.038927					71	28	3	0	0	0	0.25441	1	3582	3582		25.997	12.383	1	173840			49724	12739	28406	28407	60784	60784					0.0849428130322849
TSSSLVKKKKK	11	Unmodified	_TSSSLVKKKKK_					0	0	0			REV__ENST00000282964.5_1_21:21112145-21112373:+|nuORF	REV__ENST00000282964.5_1_21:21112145-21112373:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.55926513671875	3	411.934484	1232.78162	0.062376	2.5695E-05	1.491	0.00061421	1.5534	0.00063991	411.934975252577	36.162	0.50163	36.162	35.856	36.358	0					23	18	2	0	0	0	0.33094	1	7263	7263		4.7159	0.18705	1	163570	+		49725	19720	28407	28408	60785	60785					0.17454182936717189
TSSSRAVVV	9	Unmodified	_TSSSRAVVV_					0	0	0		ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8	ENST00000546583.5_1_12:53291214-53294602:-|nuORF	ENST00000546583.5_1_12:53291214-53294602:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.2560729980469	2	453.256174	904.497795	0.16896	7.6581E-05	-0.71443	-0.00032382	-0.54548	-0.00024724	453.25586338633343	22.049	0.65704	21.949	21.682	22.34	-0.10034					41	23	2	0	0	0	0.25112	1	3010	3010		16.149	1.3108	1	216770		+	49726	204	28408	28409	60786	60786					0.0417259689210141
TSSSRAVVV	9	Unmodified	_TSSSRAVVV_					0	0	0		ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8	ENST00000546583.5_1_12:53291214-53294602:-|nuORF	ENST00000546583.5_1_12:53291214-53294602:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.2562255859375	2	453.256174	904.497795	0.050551	2.2912E-05	-0.49881	-0.00022609	-0.44826	-0.00020318	453.2559735253483	21.952	0.70943	21.902	21.633	22.343	-0.049377					43	25	2	0	0	0	0.21447	1	3003	3003		21.537	1.0834	1	221890		+	49727	204	28408	28409	60787	60787					0.0417259689210141
TSSSRAVVV	9	Unmodified	_TSSSRAVVV_					0	0	0		ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8	ENST00000546583.5_1_12:53291214-53294602:-|nuORF	ENST00000546583.5_1_12:53291214-53294602:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	453.256174	904.497795	0.16896	7.6581E-05	-0.71443	-0.00032382	-0.54548	-0.00024724	453.25586338633343	22.049	0.65704	21.949	21.682	22.34	-0.10034	0.019341	-0.00020164	NaN	21.537	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216770		+	49728	204	28408	28409							0.0417259689210141
TSSTKNIIVSK	11	Unmodified	_TSSTKNIIVSK_					0	0	0			REV__nc|ENSG00000172995|Q9UBL0-4|ARPP21	REV__nc|ENSG00000172995|Q9UBL0-4|ARPP21	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3436889648438	2	589.342978	1176.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.18	1	116.2	115.7	116.7	0.020988								0	0	0	0.3823	1	30149	30149		0	0	1		+		49729	17755	28409	28410	60788	60788					0.09013337877672711
TSSTKNIIVSK	11	Unmodified	_TSSTKNIIVSK_					0	0	0			REV__nc|ENSG00000172995|Q9UBL0-4|ARPP21	REV__nc|ENSG00000172995|Q9UBL0-4|ARPP21	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3445434570312	2	589.342978	1176.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.5	1	119.52	119.02	120.02	0.027756								0	0	0	0.3823	1	30905	30905		0	0	1		+		49730	17755	28409	28410	60789	60789					0.09013337877672711
TSSTKNIIVSK	11	Unmodified	_TSSTKNIIVSK_					0	0	0			REV__nc|ENSG00000172995|Q9UBL0-4|ARPP21	REV__nc|ENSG00000172995|Q9UBL0-4|ARPP21	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3424072265625	2	589.342978	1176.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.95	1	119.97	119.47	120.47	0.027756								0	0	0	0.3823	1	31005	31005		0	0	1		+		49731	17755	28409	28410	60790	60790					0.09013337877672711
TSSVMLLIL	9	Unmodified	_TSSVMLLIL_					0	0	0		ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	ENSG00000100191|ENST00000266086|SLC5A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7215270996094	2	488.791004	975.567454	0.39598	0.00019355	-1.1692	-0.00057151	-0.77324	-0.00037795	488.79082854137107	88.775	0.7972	88.772	88.445	89.243	-0.0028381					45	33	2	0	0	0	0.19839	1	23457	23457		28.487	0	1	171830			49732	1542	28410	28411	60791	60791					0.0786933951650326
TSSVQAFSK	9	Unmodified	_TSSVQAFSK_					0	0	0		nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.263916015625	2	477.748182	953.481811	0.089618	4.2815E-05	0.092145	4.4022E-05	0.18176	8.6837E-05	477.7483808363323	17.9	0.6647	17.84	17.588	18.253	-0.060429					30	23	2	0	0	0	0.25066	1	1725	1725		11.64	0	1	27996			49733	2870	28411	28412	60792	60792					0.0032089065518903226
TSSWDRPNK	9	Unmodified	_TSSWDRPNK_					0	0	0		MER57F_dup142|chr6:29552528-29552933:-|2.228969328304216|0.0722232426967899|4.95|535.0|10|2|sense	MER57F_dup142|chr6:29552528-29552933:-|2.228969328304216|0.0722232426967899|4.95|535.0|10|2|sense	MER57F_dup142|chr6:29552528-29552933:-|2.228969328304216|0.0722232426967899|4.95|535.0|10|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.767333984375	2	545.767437	1089.52032	0.26446	0.00014433	-0.39878	-0.00021764	-0.13432	-7.3306E-05	545.7672646075588	14.629	0.69289	14.563	14.289	14.982	-0.066068					51	24	3	0	0	0	0.33719	1	807	807		3.2813	0.28607	1	135220			49734	12537	28412	28413	60793	60793					-0.020858037102925664
TSSWRTLGQ	9	Unmodified	_TSSWRTLGQ_					0	0	0		KCNAB2|p.A324Pfs*69|1|0.67|ENSG00000069424|chr1:6097309-6097309|G/-|frameshift_variant	KCNAB2|p.A324Pfs*69|1|0.67|ENSG00000069424|chr1:6097309-6097309|G/-|frameshift_variant	KCNAB2|p.A324Pfs*69|1|0.67|ENSG00000069424|chr1:6097309-6097309|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2786865234375	2	518.26453	1034.51451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.524	1	26.486	25.986	26.986	-0.038671								0	0	0	0.19013	1	4382	4382		25.399	0	1				49735	12431	28413	28414	60794	60794					-0.0013690222197055846
TSTDVSLKI	9	Unmodified	_TSTDVSLKI_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.27178955078125	2	482.27149	962.528426	0.33891	0.00016345	0.48312	0.00023299	0.82203	0.00039644	482.2716136400765	43.495	0.73304	43.573	43.291	44.024	0.077515					63	26	3	0	0	0	0.0032746	1	9592	9592		100.09	43.914	1	2446100			49736	3377	28414	28415	60795	60795					0.04566330486466086
TSTDVSLKI	9	Unmodified	_TSTDVSLKI_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.271728515625	2	482.27149	962.528426	0.36666	0.00017683	0.45141	0.0002177	0.81807	0.00039453	482.2716132952499	43.477	0.67554	43.561	43.268	43.944	0.083996					63	24	3	0	0	0	0.001957	1	9573	9573		110.55	41.448	1	2467800			49737	3377	28414	28415	60796	60796					0.04566330486466086
TSTDVSLKI	9	Unmodified	_TSTDVSLKI_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	482.27149	962.528426	0.16453	7.935E-05	0.70194	0.00033852	0.86647	0.00041787	482.2717154062293	43.664	0.81388	43.664	43.362	44.176	0	0.065184	0.00016532	NaN	110.55	65	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2427800			49738	3377	28414	28415							0.04566330486466086
TSTGKNLLV	9	Unmodified	_TSTGKNLLV_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000441022.1_1_1:225591007-225592250:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7742004394531	2	466.7742	931.533846	0.09084	4.2402E-05	-0.18922	-8.8323E-05	-0.09838	-4.5921E-05	466.77400799124104	31.988	0.56578	31.988	31.772	32.338	0					33	19	2	0	0	0	0.13748	1	6067	6067		32.786	3.7041	1	451990			49739	4550	28415	28416	60797	60797					0.06534054068958994
TSTGKNLLV	9	Unmodified	_TSTGKNLLV_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000441022.1_1_1:225591007-225592250:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7740478515625	2	466.7742	931.533846	0.183	8.5418E-05	0.024419	1.1398E-05	0.20742	9.6816E-05	466.774063813956	31.855	0.67267	31.898	31.709	32.382	0.042364					34	23	2	0	0	0	0.088443	1	6010	6010		39.95	3.8227	1	614360			49740	4550	28415	28416	60798	60798					0.06534054068958994
TSTITRFRE	9	Unmodified	_TSTITRFRE_					0	0	0			REV__nc|ENSG00000111737|Q15286-2|RAB35	REV__nc|ENSG00000111737|Q15286-2|RAB35	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7969360351562	2	555.798737	1109.58292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.76	1	113.76	113.26	114.26	0								0	0	0	0.26513	1	29541	29541		1.4819	1.1313	1		+		49741	14735	28416	28417	60799	60799					0.03251342357907561
TSTKLNGIV	9	Unmodified	_TSTKLNGIV_					0	0	0		ENST00000413593.5_2_7:66386836-66386953:+|nuORF	ENST00000413593.5_2_7:66386836-66386953:+|nuORF	ENST00000413593.5_2_7:66386836-66386953:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.774169921875	2	466.7742	931.533846	0.23611	0.00011021	-0.083948	-3.9185E-05	0.15216	7.1026E-05	466.7739023533339	31.899	0.65483	31.94	31.722	32.377	0.040991					36	22	2	0	0	0	0.20626	1	6050	6050		22.736	0	1	516050			49742	10290	28417	28418	60800	60800					0.06534054068958994
TSTSLPRPR	9	Unmodified	_TSTSLPRPR_					0	0	0		nc|ENSG00000095370|Q8N5H7-6|SH2D3C;nc|ENSG00000095370|Q8N5H7-5|SH2D3C;nc|ENSG00000095370|Q8N5H7-2|SH2D3C;nc|ENSG00000095370|Q8N5H7-4|SH2D3C;ENSG00000095370|ENST00000314830|SH2D3C;nc|ENSG00000095370|Q8N5H7-3|SH2D3C;SH2D3C|p.L729Sfs*10|1|0.23|ENSG00000095370|chr9:127740273-127740273|G/-|frameshift_variant	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	nc|ENSG00000095370|Q8N5H7-6|SH2D3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3075256347656	2	507.788173	1013.56179	-0.0031228	-1.5857E-06	0.33238	0.00016878	0.32926	0.00016719	507.78831071053975	13.884	0.62005	13.884	13.687	14.307	0					51	21	4	0	0	0	0.31417	1	668	668		6.7232	0	1	454850			49743	1449	28418	28419	60801	60801					0.05555377049051913
TSTSLSRLK	9	Unmodified	_TSTSLSRLK_					0	0	0		ENST00000585825.1_1_17:58888238-58888406:+|nuORF	ENST00000585825.1_1_17:58888238-58888406:+|nuORF	ENST00000585825.1_1_17:58888238-58888406:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.30975341796875	2	496.790381	991.566209	0.60567	0.00030089	1.4722	0.00073138	2.0779	0.0010323	496.7911621399605	41.48	1.1585	41.577	41.259	42.418	0.096626					80	44	2	0	0	0	0.088443	4	9035	8937;8996;9035;9048		39.95	39.95	1	4793600			49744	12111	28419	28420	60802;60803;60804;60805	60804					0.0700884147195211
TSTTVPKAL	9	Unmodified	_TSTTVPKAL_					0	0	0		nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7403869628906	2	459.26875	916.522947	0.12309	5.6533E-05	-1.255	-0.00057639	-1.1319	-0.00051986	459.2701056372036	16.516	0.1706	16.453	16.324	16.495	-0.062534					7	5	2	0	0	0	0.26168	1	1330	1330		1.8442	0	1	15496			49745	12986	28420	28421	60806	60806					0.061346516946514384
TSVAKVVRV	9	Unmodified	_TSVAKVVRV_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.80572509765625	2	479.805834	957.597115	0.38654	0.00018547	-0.20971	-0.00010062	0.17683	8.4845E-05	479.8056651810443	26.846	0.53553	26.834	26.625	27.16	-0.011562					35	18	3	0	0	0	0.12642	1	4481	4481		34.402	9.0024	1	172180			49746	6014	28421	28422	60807	60807					0.11662039576845018
TSVAKVVRV	9	Unmodified	_TSVAKVVRV_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	479.805834	957.597115	0.10792	5.1779E-05	0.11604	5.5679E-05	0.22396	0.00010746	479.80579481678717	26.839	0.59383	26.839	26.644	27.237	0	0.0079431	0.00021466	NaN	34.402	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106150			49747	6014	28421	28422							0.11662039576845018
TSVAKVVRV	9	Unmodified	_TSVAKVVRV_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.805834	957.597115	0.20059	9.6245E-05	-0.096098	-4.6108E-05	0.10449	5.0137E-05	479.8057045111673	26.842	0.53788	26.821	26.62	27.158	-0.021412	-0.010894	1.1089E-05	NaN	34.402	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135730			49748	6014	28421	28422							0.11662039576845018
TSVCVPFEKLK	11	Unmodified	_TSVCVPFEKLK_					0	0	0			REV__ENST00000400706.3_1_12:87289-88257:+|nuORF	REV__ENST00000400706.3_1_12:87289-88257:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2579040527344	3	417.565291	1249.67404	0.23878	9.9706E-05	-0.93586	-0.00039078	-0.69708	-0.00029108	417.8988629504004	26.938	0.44501	26.927	26.625	27.07	-0.01156					18	15	2	0	0	0	0.33073	1	4520	4520		3.5927	1.6652	1	35090	+		49749	20704	28422	28423	60808	60808					0.05919470010985606
TSVFAHAT	8	Unmodified	_TSVFAHAT_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.225341796875	2	417.211235	832.407917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.035	1	71.01	70.51	71.51	-0.024872								0	0	0	0.35466	1	18022	18022		12.532	3.1841	1		+		49750	17534	28423	28424	60809	60809					-0.014990327164809969
TSVGAYHYMLE	11	Unmodified	_TSVGAYHYMLE_					0	0	0		ENSG00000145721|ENST00000274382|LIX1	ENSG00000145721|ENST00000274382|LIX1	ENSG00000145721|ENST00000274382|LIX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.5824890136719	3	424.197268	1269.56997	0.18269	7.7495E-05	-0.42202	-0.00017902	-0.23933	-0.00010152	424.1970170242491	37.758	0.74906	37.758	37.369	38.118	0					59	23	4	0	0	0	0.3299	1	7776	7776		9.7643	5.3581	1	635500			49751	4667	28424	28425	60810	60810					-0.05402856816522217
TSVGAYHYMLE	11	Unmodified	_TSVGAYHYMLE_					0	0	0		ENSG00000145721|ENST00000274382|LIX1	ENSG00000145721|ENST00000274382|LIX1	ENSG00000145721|ENST00000274382|LIX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.1972351074219	3	424.197268	1269.56997	-0.032843	-1.3932E-05	-0.23692	-0.0001005	-0.26977	-0.00011443	424.1971181956785	37.625	0.95836	37.713	37.358	38.316	0.087406					72	34	4	0	0	0	0.35571	1	7754	7754		17.049	4.1926	1	824080			49752	4667	28424	28425	60811	60811					-0.05402856816522217
TSVGAYHYMLE	11	Unmodified	_TSVGAYHYMLE_					0	0	0		ENSG00000145721|ENST00000274382|LIX1	ENSG00000145721|ENST00000274382|LIX1	ENSG00000145721|ENST00000274382|LIX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.19732666015625	3	424.197268	1269.56997	-0.027022	-1.1463E-05	0.016963	7.1958E-06	-0.010059	-4.267E-06	424.19719135007455	37.555	0.66566	37.648	37.423	38.089	0.093014					62	24	4	0	0	0	0.31508	1	7732	7732		20.871	7.3525	1	580270			49753	4667	28424	28425	60812	60812					-0.05402856816522217
TSVGYAIFK	9	Unmodified	_TSVGYAIFK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000492740.5_1_2:203130664-203139913:+|nuORF;ENST00000472050.5_1_2:203130664-203149064:+|nuORF;ENST00000488403.5_1_2:203130664-203149205:+|nuORF;ENST00000467734.5_1_2:203130664-203142690:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.2716064453125	2	493.271293	984.528032	0.7536	0.00037173	-0.72421	-0.00035723	0.029393	1.4499E-05	493.2706633970875	48.403	0.83249	48.45	47.994	48.826	0.04752					60	30	3	0	0	0	0.0079761	1	11072	11072		82.529	42.572	1	699430			49754	697	28425	28426	60813	60813					0.035149555572729696
TSVGYAIFK	9	Unmodified	_TSVGYAIFK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000492740.5_1_2:203130664-203139913:+|nuORF;ENST00000472050.5_1_2:203130664-203149064:+|nuORF;ENST00000488403.5_1_2:203130664-203149205:+|nuORF;ENST00000467734.5_1_2:203130664-203142690:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.271293	984.528032	0.55638	0.00027444	-0.056357	-2.7799E-05	0.50002	0.00024664	493.27120899818925	48.43	0.59009	48.43	48.131	48.721	0	0.010661	0.00010431	NaN	82.529	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	867890			49755	697	28425	28426							0.035149555572729696
TSVGYAIFK	9	Unmodified	_TSVGYAIFK_					0	0	0		ENSG00000055044|ENST00000264279|NOP58;ENST00000492740.5_1_2:203130664-203139913:+|nuORF;ENST00000472050.5_1_2:203130664-203149064:+|nuORF;ENST00000488403.5_1_2:203130664-203149205:+|nuORF;ENST00000467734.5_1_2:203130664-203142690:+|nuORF	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.271293	984.528032	0.57718	0.00028471	-0.14153	-6.9814E-05	0.43565	0.00021489	493.27100816244354	48.335	0.65646	48.379	48.065	48.721	0.04332	-0.041091	2.0282E-05	NaN	82.529	46	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	848630			49756	697	28425	28426							0.035149555572729696
TSVIISWQPPY	11	Unmodified	_TSVIISWQPPY_					0	0	0		USH2A|p.T2648Yfs*13|1|0.13|ENSG00000042781|chr1:215888708-215888709|-/G|frameshift_variant	USH2A|p.T2648Yfs*13|1|0.13|ENSG00000042781|chr1:215888708-215888709|-/G|frameshift_variant	USH2A|p.T2648Yfs*13|1|0.13|ENSG00000042781|chr1:215888708-215888709|-/G|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.911376953125	3	430.895806	1289.66559	0.082639	3.5609E-05	3.0196	0.0013011	3.1022	0.0013367	430.8969976739737	37.916	0.53156	37.916	37.56	38.092	0					32	18	2	0	0	0	0.37585	1	7856	7856		8.2864	0.44039	1	199240			49757	23409	28426	28427	60814	60814					0.032342393660655944
TSVKKLRNKLS	11	Unmodified	_TSVKKLRNKLS_					0	0	0			REV__ENST00000491650.5_1_9:126219181-126371720:-|nuORF	REV__ENST00000491650.5_1_9:126219181-126371720:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.77410888671875	3	425.269866	1272.78777	-1.5579	-0.00066253	0.25234	0.00010731	-1.3056	-0.00055521	425.2701032674635	34.808	0.29682	34.808	34.646	34.943	0					15	10	2	0	0	0	0.33303	1	6891	6891		2.4348	0.50728	1	126130	+		49758	15044	28427	28428	60815	60815					0.16228701168279258
TSVKYFLL	8	Unmodified	_TSVKYFLL_					0	0	0			REV__RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	REV__RYR2|p.M4809Qfs*5|1|0.04|ENSG00000198626|chr1:237809025-237809026|-/CCAGGTAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8004150390625	2	485.784036	969.553519	0.32171	0.00015628	-1.2702	-0.00061704	-0.94848	-0.00046076	485.78332665940366	88.762	0.56796	88.851	88.574	89.142	0.089195					42	23	3	0	0	0	0.41758	1	23435	23435		16.942	0	1	226190	+		49759	18840	28428	28429	60816	60816					0.06752430079700389
TSVLSKKLRW	10	Unmodified	_TSVLSKKLRW_					0	0	0			REV__nc|ENSG00000100150|O75140-2|DEPDC5	REV__nc|ENSG00000100150|O75140-2|DEPDC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.5837097167969	3	406.583674	1216.72919	-0.48115	-0.00019563	1.1525	0.00046858	0.67133	0.00027295	406.5841177808658	103.66	0.30725	103.66	103.61	103.92	0					51	43	2	0	0	0	0.41085	1	27558	27558		0.62683	0.12087	1	3992800	+		49760	14165	28429	28430	60817	60817					0.1294964459377752
TSVPVQRVT	9	Unmodified	_TSVPVQRVT_					0	0	0			REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2261047363281	2	493.785099	985.555644	0.32194	0.00015897	-1.4388	-0.00071044	-1.1168	-0.00055147	493.784540140503	41.926	0.28565	41.926	41.799	42.085	0					14	10	2	0	0	0	0.24289	1	9118	9118		8.7454	5.4641	1	673430	+		49761	17571	28430	28431	60818	60818					0.06228858817530636
TSVRRCSYLK	10	Unmodified	_TSVRRCSYLK_					0	0	0		ENST00000482704.1_1_2:96692637-96693504:-|nuORF;ENST00000471757.5_1_2:96691131-96693504:-|nuORF;ENST00000486463.5_1_2:96687909-96693504:-|nuORF	ENST00000482704.1_1_2:96692637-96693504:-|nuORF	ENST00000482704.1_1_2:96692637-96693504:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.22161865234375	3	404.888768	1211.64448	0.11493	4.6536E-05	1.2578	0.00050926	1.3727	0.00055579	404.88958211914417	20.109	0.65601	20.053	19.571	20.227	-0.055693					28	23	2	0	0	0	0.32033	1	2413	2413		1.7423	0.14999	1	61387			49762	10880	28431	28432	60819	60819					0.047119507855313714
TSWALPLPS	9	Unmodified	_TSWALPLPS_					0	0	0		ENST00000595531.5_1_2:105883140-105883392:-|nuORF	ENST00000595531.5_1_2:105883140-105883392:-|nuORF	ENST00000595531.5_1_2:105883140-105883392:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8003234863281	2	486.263468	970.512382	0.63452	0.00030854	-1.4149	-0.00068802	-0.78039	-0.00037947	486.26245899042243	77.768	0.59548	77.823	77.541	78.137	0.05542					43	21	3	0	0	0	0.24913	1	20142	20142		7.9102	0	1	238860			49763	12223	28432	28433	60820	60820					0.025946690402406603
TSWWSYYIF	9	Unmodified	_TSWWSYYIF_					0	0	0		nc|ENSG00000211804|A0A1B0GX56|TRDV1	nc|ENSG00000211804|A0A1B0GX56|TRDV1	nc|ENSG00000211804|A0A1B0GX56|TRDV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.8563842773438	2	626.787307	1251.56006	0.83501	0.00052338	-3.5307	-0.002213	-2.6957	-0.0016896	626.7867708531794	50.47	0.776	50.49	50.226	51.002	0.020695					56	28	3	0	0	0	0.25526	1	11659	11659		7.9102	0	1	293520			49764	12931	28433	28434	60821	60821					-0.05565676759579219
TSYFLFVMVIT	11	Unmodified	_TSYFLFVMVIT_					0	0	0		ENSG00000106609|ENST00000341567|TMEM248	ENSG00000106609|ENST00000341567|TMEM248	ENSG00000106609|ENST00000341567|TMEM248	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.90155029296875	3	440.901792	1319.68355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.676	1	15.611	15.111	16.111	-0.064413								0	0	0	0.38134	1	1097	1097		1.1098	0	1				49765	2087	28434	28435	60822	60822					0.03649238296566182
TSYFLLVV	8	Unmodified	_TSYFLLVV_					0	0	0			REV__ENSG00000168124|ENST00000304646|OR1F1	REV__ENSG00000168124|ENST00000304646|OR1F1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2472229003906	2	471.270761	940.52697	-0.07499	-3.5341E-05	3.0109	0.0014189	2.9359	0.0013836	471.2723684240745	34.198	0.97444	34.265	33.907	34.882	0.066704					53	34	2	0	0	0	0.34218	1	6803	6803		5.2307	0	1	144210	+		49766	17442	28435	28436	60823	60823					0.0543274118839463
TSYLKMRVVF	10	Unmodified	_TSYLKMRVVF_					0	0	0		ENSG00000112246|ENST00000369208|SIM1	ENSG00000112246|ENST00000369208|SIM1	ENSG00000112246|ENST00000369208|SIM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3475341796875	2	622.347009	1242.67946	0.27701	0.0001724	0.29614	0.0001843	0.57315	0.0003567	622.3470469691697	83.887	1.7177	83.964	83.214	84.931	0.077095					110	67	2	0	0	0	0.40106	1	21995	21995		3.2813	0	1	338500			49767	2425	28436	28437	60824	60824					0.0678319359346915
TSYPDPILLMK	11	Oxidation (M)	_TSYPDPILLM(Oxidation (M))K_		TSYPDPILLM(1)K		TSYPDPILLM(95)K	0	0	1		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.3427734375	2	647.341589	1292.66863	0.7268	0.00047049	-0.42915	-0.00027781	0.29765	0.00019268	647.3414204675919	54.985	0.83126	54.985	54.651	55.482	0					62	30	3	0	0	0	0.0011409	2	13087	13087;13141		94.909	78.76	1	1018800			49768	3012	28437	28438	60825;60826	60825		375			0.03399746428522121
TSYPDPILLMK	11	Oxidation (M)	_TSYPDPILLM(Oxidation (M))K_		TSYPDPILLM(1)K		TSYPDPILLM(120)K	0	0	1		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.34130859375	2	647.341589	1292.66863	0.66075	0.00042773	-0.34781	-0.00022515	0.31294	0.00020258	647.3415157246004	54.956	0.83277	55.019	54.694	55.527	0.063206					62	30	3	0	0	0	1.6866E-05	2	13105	13057;13105		117.84	96.301	1	893080			49769	3012	28437	28438	60827;60828	60828		375			0.03399746428522121
TSYPDPILLMK	11	Oxidation (M)	_TSYPDPILLM(Oxidation (M))K_		TSYPDPILLM(1)K		TSYPDPILLM(100)K	0	0	1		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.3421630859375	2	647.341589	1292.66863	0.61724	0.00039956	-0.13279	-8.5963E-05	0.48444	0.0003136	647.3415121872875	55.116	0.85579	55.097	54.652	55.508	-0.019081					66	31	3	0	0	0	0.00072509	2	13128	13128;13188		100.71	79.172	1	1102200			49770	3012	28437	28438	60829;60830	60829		375			0.03399746428522121
TSYPHPLPK	9	Unmodified	_TSYPHPLPK_					0	0	0		ENST00000382291.7_1_20:334405-334570:+|nuORF	ENST00000382291.7_1_20:334405-334570:+|nuORF	ENST00000382291.7_1_20:334405-334570:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2677612304688	2	520.282192	1038.54983	0.35567	0.00018505	-1.2815	-0.00066675	-0.92586	-0.00048171	520.7842405490296	32.838	0.30294	32.893	32.73	33.033	0.055309					13	10	2	0	0	0	0.30623	1	6328	6328		7.9102	0	1	137060			49771	10006	28438	28439	60831	60831					0.03209760305844611
TSYPLNIFIP	10	Unmodified	_TSYPLNIFIP_					0	0	0			REV__CDH23|p.N2695Kfs*9|1|0.17|ENSG00000107736|chr10:71805868-71805868|C/-|frameshift_variant	REV__CDH23|p.N2695Kfs*9|1|0.17|ENSG00000107736|chr10:71805868-71805868|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.8186645507812	2	582.818607	1163.62266	0.33511	0.00019531	0.20434	0.00011909	0.53945	0.0003144	582.8185676422431	90.626	0.64239	90.626	90.292	90.934	0					109	50	3	0	0	0	0.19885	2	24063	23973;24063		32.786	8.7651	1	436500	+		49772	13145	28439	28440	60832;60833	60833					0.047394693086062034
TSYPLNIFIP	10	Unmodified	_TSYPLNIFIP_					0	0	0			REV__CDH23|p.N2695Kfs*9|1|0.17|ENSG00000107736|chr10:71805868-71805868|C/-|frameshift_variant	REV__CDH23|p.N2695Kfs*9|1|0.17|ENSG00000107736|chr10:71805868-71805868|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.8192138671875	2	582.818607	1163.62266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.947	1	90.947	90.447	91.447	0								0	0	0	0.30188	1	24129	24129		27.629	3.6082	1		+		49773	13145	28439	28440	60834	60834					0.047394693086062034
TSYPLNIFIP	10	Unmodified	_TSYPLNIFIP_					0	0	0			REV__CDH23|p.N2695Kfs*9|1|0.17|ENSG00000107736|chr10:71805868-71805868|C/-|frameshift_variant	REV__CDH23|p.N2695Kfs*9|1|0.17|ENSG00000107736|chr10:71805868-71805868|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.818603515625	2	582.818607	1163.62266	0.31994	0.00018647	0.38909	0.00022677	0.70903	0.00041324	582.8184901259099	90.456	0.65448	90.546	90.225	90.879	0.090668					125	50	3	0	0	0	0.12843	3	23922	23922;23965;24013		41.84	8.7651	1	441170	+		49774	13145	28439	28440	60835;60836;60837	60835					0.047394693086062034
TSYPLNIFIP	10	Unmodified	_TSYPLNIFIP_					0	0	0			REV__CDH23|p.N2695Kfs*9|1|0.17|ENSG00000107736|chr10:71805868-71805868|C/-|frameshift_variant	REV__CDH23|p.N2695Kfs*9|1|0.17|ENSG00000107736|chr10:71805868-71805868|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.8190307617188	2	582.818607	1163.62266	0.45326	0.00026417	0.33251	0.00019379	0.78577	0.00045796	582.8185487473985	90.567	0.65044	90.567	90.287	90.937	0.00039673					117	48	3	0	0	0	0.19885	1	23951	23951		32.786	2.1491	1	435430	+		49775	13145	28439	28440	60838	60838					0.047394693086062034
TTAAEYVKSRL	11	Unmodified	_TTAAEYVKSRL_					0	0	0		nc|ENSG00000163590|Q5SGD2-3|PPM1L	nc|ENSG00000163590|Q5SGD2-3|PPM1L	nc|ENSG00000163590|Q5SGD2-3|PPM1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8404541015625	2	619.840602	1237.66665	-0.074489	-4.6171E-05	0.49832	0.00030888	0.42383	0.00026271	619.8408442254573	39.507	0.72831	39.507	39.268	39.996	0					62	26	3	0	0	0	0.33432	1	8311	8311		29.841	3.5724	1	701400			49776	12798	28440	28441	60839	60839					0.057324537349586535
TTADLQKQLYL	11	Unmodified	_TTADLQKQLYL_					0	0	0			REV__GCC2|p.V1325Sfs*7|1|0.29|ENSG00000135968|chr2:108487741-108487741|G/-|frameshift_variant	REV__GCC2|p.V1325Sfs*7|1|0.29|ENSG00000135968|chr2:108487741-108487741|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	647.3186645507812	2	647.356085	1292.69762	0.30599	0.00019809	0.014159	9.1658E-06	0.32015	0.00020725	647.3560362060186	40.614	0.94613	40.714	40.427	41.373	0.099407					106	34	5	0	0	0	0.32787	1	8618	8618		17.443	17.443	1	5396100	+		49777	15775	28441	28442	60840	60840					0.06297607049214093
TTAPPAVLGY	10	Unmodified	_TTAPPAVLGY_					0	0	0			REV__ENST00000489039.1_1_20:36948541-36950068:+|nuORF	REV__ENST00000489039.1_1_20:36948541-36950068:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2547302246094	2	495.26875	988.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.505	1	33.572	33.072	34.072	0.066704								0	0	0	0.35948	1	6501	6501		10.824	0.64053	1		+		49778	14270	28442	28443	60841	60841					0.028226516946688207
TTAQLQVQK	9	Unmodified	_TTAQLQVQK_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.79046630859375	2	508.790381	1015.56621	0.14129	7.1889E-05	0.14768	7.5137E-05	0.28897	0.00014703	508.79038901170037	22.513	0.48462	22.513	22.331	22.815	0					33	16	3	0	0	0	0.20381	1	3185	3185		29.841	16.798	1	98633			49779	3332;12691	28443	28444	60842	60842					0.059048414719427456
TTAQLQVQK	9	Unmodified	_TTAQLQVQK_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.79046630859375	2	508.790381	1015.56621	0.10196	5.1876E-05	-0.17469	-8.888E-05	-0.072729	-3.7004E-05	508.79023813439517	22.672	0.4989	22.584	22.321	22.82	-0.087608					35	17	3	0	0	0	0.12056	1	3201	3201		51.415	27.395	1	124090			49780	3332;12691	28443	28444	60843	60843					0.059048414719427456
TTAVFRIAK	9	Unmodified	_TTAVFRIAK_					0	0	0		L1PA4_dup1160|chr2:91782775-91784994:+|2.5253371533198647|0.3095922205464006|3.03|525.0|65|3|sense	L1PA4_dup1160|chr2:91782775-91784994:+|2.5253371533198647|0.3095922205464006|3.03|525.0|65|3|sense	L1PA4_dup1160|chr2:91782775-91784994:+|2.5253371533198647|0.3095922205464006|3.03|525.0|65|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7656555175781	2	503.805834	1005.59712	0.13147	6.6236E-05	0.87425	0.00044045	1.0057	0.00050669	503.8065197860621	23.221	0.38767	23.134	22.937	23.325	-0.087608					19	13	2	0	0	0	0.25202	1	3375	3375		6.7232	0	1	46138			49781	12479	28444	28445	60844	60844					0.09454039576849027
TTDRYIQQK	9	Unmodified	_TTDRYIQQK_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.80419921875	2	576.80402	1151.59349	-0.01204	-6.9446E-06	0.17279	9.9665E-05	0.16075	9.2721E-05	576.8041244205084	15.504	0.63491	15.504	15.257	15.892	0					54	21	3	0	0	0	0.23612	1	1043	1043		18.373	3.5348	1	193930			49782	4869	28445	28446	60845	60845					0.02375325012326357
TTDRYIQQK	9	Unmodified	_TTDRYIQQK_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8042602539062	2	576.80402	1151.59349	0.12271	7.0778E-05	0.058198	3.3569E-05	0.18091	0.00010435	576.8040672655974	15.611	0.5572	15.502	15.285	15.842	-0.10981					50	18	4	0	0	0	0.19905	1	1069	1069		23.79	9.8837	1	199270			49783	4869	28445	28446	60846	60846					0.02375325012326357
TTDRYIQQK	9	Unmodified	_TTDRYIQQK_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8040771484375	2	576.80402	1151.59349	0.0093036	5.3663E-06	0.21451	0.00012373	0.22381	0.00012909	576.8041519953318	15.566	0.53066	15.502	15.333	15.864	-0.064413					42	17	3	0	0	0	0.32638	1	1107	1107		4.897	2.6142	1	248990			49784	4869	28445	28446	60847	60847					0.02375325012326357
TTDSGPYFEK	10	Unmodified	_TTDSGPYFEK_					0	0	0		nc|ENSG00000100354|Q9UPQ9-2|TNRC6B;nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;ENSG00000100354|ENST00000454349|TNRC6B	nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2655639648438	2	572.761486	1143.50842	0.35779	0.00020493	-0.30736	-0.00017604	0.050431	2.8885E-05	572.7612644321389	30.004	0.39082	30.004	29.75	30.141	0					25	13	3	0	0	0	0.31696	1	5436	5436		10.151	2.5416	1	171460			49785	1579	28446	28447	60848	60848					-0.057594652441366634
TTEGRNALIHK	11	Unmodified	_TTEGRNALIHK_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.898193359375	3	413.898321	1238.67313	-0.23843	-9.8688E-05	0.4704	0.0001947	0.23196	9.6009E-05	413.8984824294487	15.776	0.74277	15.776	15.471	16.214	0					47	25	2	0	0	0	0.19715	1	1121	1121		31.462	8.4462	1	642170			49786	3909	28447	28448	60849	60849					0.06334391686323215
TTEGRNALIHK	11	Unmodified	_TTEGRNALIHK_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.8983154296875	3	413.898321	1238.67313	0.083257	3.446E-05	-3.6846	-0.001525	-3.6013	-0.0014906	413.89835830420145	15.866	0.87221	15.757	15.436	16.308	-0.10982					128	29	6	0	0	0	0.076423	2	1161	1161;1207		45.603	12.986	1	596990			49787	3909	28447	28448	60850;60851	60850					0.06334391686323215
TTEGRNALIHK	11	Unmodified	_TTEGRNALIHK_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.8982849121094	3	413.898321	1238.67313	0.040408	1.6725E-05	-3.3953	-0.0014053	-3.3548	-0.0013886	413.8983580755907	15.786	0.80658	15.722	15.457	16.264	-0.064414					111	27	6	0	0	0	0.10862	2	1137	1137;1180		39.413	22.847	1	788460			49788	3909	28447	28448	60852;60853	60852					0.06334391686323215
TTFLLLIPF	9	Unmodified	_TTFLLLIPF_					0	0	0			REV__nc|ENSG00000154719|Q9NYK5-2|MRPL39	REV__nc|ENSG00000154719|Q9NYK5-2|MRPL39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2820434570312	2	532.823161	1063.63177	0.26594	0.0001417	-2.3212	-0.0012368	-2.0553	-0.0010951	532.8220121709497	35.563	0.42209	35.649	35.476	35.898	0.086246					19	14	2	0	0	0	0.25879	1	7132	7132		4.756	1.7608	1	181320	+		49789	23036	28448	28449	60854	60854					0.10249862664932152
TTFPESHLR	9	Unmodified	_TTFPESHLR_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;IFI16|p.F441Sfs*13|1|0.06|ENSG00000163565|chr1:159032683-159032684|-/CGGGTTTGTTTTTTTCTTTATC|frameshift_variant;nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.6875610351562	2	544.28018	1086.54581	0.31455	0.0001712	-0.34056	-0.00018536	-0.026016	-1.416E-05	544.2798654026642	28.557	0.61426	28.557	28.31	28.924	0					40	21	3	0	0	0	0.2422	1	4992	4992		19.362	8.538	1	266120			49790	5702	28449	28450	60855	60855					0.005996708121301708
TTFPESHLR	9	Unmodified	_TTFPESHLR_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;IFI16|p.F441Sfs*13|1|0.06|ENSG00000163565|chr1:159032683-159032684|-/CGGGTTTGTTTTTTTCTTTATC|frameshift_variant;nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.6876831054688	2	544.28018	1086.54581	0.43835	0.00023859	-0.72319	-0.00039362	-0.28484	-0.00015503	544.2797815467377	28.483	0.62209	28.478	28.306	28.928	-0.0042572					39	21	3	0	0	0	0.19686	1	4993	4993		31.268	17.362	1	304280			49791	5702	28449	28450	60856	60856					0.005996708121301708
TTFPESHLR	9	Unmodified	_TTFPESHLR_					0	0	0		nc|ENSG00000163565|Q16666-8|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;IFI16|p.F441Sfs*13|1|0.06|ENSG00000163565|chr1:159032683-159032684|-/CGGGTTTGTTTTTTTCTTTATC|frameshift_variant;nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-8|IFI16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.6876220703125	2	544.28018	1086.54581	0.33944	0.00018475	-0.57925	-0.00031527	-0.23981	-0.00013053	544.2799488293913	28.544	0.60013	28.545	28.294	28.894	0.0004673					50	20	4	0	0	0	0.22143	1	4989	4989		24.991	14.167	1	266990			49792	5702	28449	28450	60857	60857					0.005996708121301708
TTGEPATPK	9	Unmodified	_TTGEPATPK_					0	0	0		nc|ENSG00000005302|Q8N5Y2-4|MSL3;nc|ENSG00000005302|Q8N5Y2-6|MSL3;nc|ENSG00000005302|Q8N5Y2-5|MSL3;nc|ENSG00000005302|Q8N5Y2-2|MSL3;nc|ENSG00000005302|Q8N5Y2-3|MSL3;ENSG00000005302|ENST00000312196|MSL3	nc|ENSG00000005302|Q8N5Y2-4|MSL3	nc|ENSG00000005302|Q8N5Y2-4|MSL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.23480224609375	2	451.234907	900.455261	-0.089148	-4.0227E-05	-0.051331	-2.3162E-05	-0.14048	-6.3389E-05	451.23477132420965	15.262	1.158	15.262	14.789	15.947	0					65	40	3	0	0	0	0.11201	2	968	968;1017		36.506	14.76	1	291740			49793	332	28450	28451	60858;60859	60858					0.001052017638585312
TTGEPATPK	9	Unmodified	_TTGEPATPK_					0	0	0		nc|ENSG00000005302|Q8N5Y2-4|MSL3;nc|ENSG00000005302|Q8N5Y2-6|MSL3;nc|ENSG00000005302|Q8N5Y2-5|MSL3;nc|ENSG00000005302|Q8N5Y2-2|MSL3;nc|ENSG00000005302|Q8N5Y2-3|MSL3;ENSG00000005302|ENST00000312196|MSL3	nc|ENSG00000005302|Q8N5Y2-4|MSL3	nc|ENSG00000005302|Q8N5Y2-4|MSL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2347717285156	2	451.234907	900.455261	-0.037698	-1.7011E-05	0.14441	6.5162E-05	0.10671	4.8151E-05	451.2348283986719	15.416	0.9687	15.307	14.93	15.899	-0.10981					68	33	3	0	0	0	0.020233	2	1009	1009;1059		63.961	27.833	1	275940			49794	332	28450	28451	60860;60861	60860					0.001052017638585312
TTGEPATPK	9	Unmodified	_TTGEPATPK_					0	0	0		nc|ENSG00000005302|Q8N5Y2-4|MSL3;nc|ENSG00000005302|Q8N5Y2-6|MSL3;nc|ENSG00000005302|Q8N5Y2-5|MSL3;nc|ENSG00000005302|Q8N5Y2-2|MSL3;nc|ENSG00000005302|Q8N5Y2-3|MSL3;ENSG00000005302|ENST00000312196|MSL3	nc|ENSG00000005302|Q8N5Y2-4|MSL3	nc|ENSG00000005302|Q8N5Y2-4|MSL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2347412109375	2	451.234907	900.455261	-0.075841	-3.4222E-05	0.028778	1.2986E-05	-0.047063	-2.1236E-05	451.23480041021895	15.389	0.99128	15.324	15.013	16.004	-0.064413					60	33	3	0	0	0	0.11201	2	1009	1009;1059		36.506	19.393	1	302820			49795	332	28450	28451	60862;60863	60862					0.001052017638585312
TTGHLIYK	8	Unmodified	_TTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.76397705078125	2	466.763635	931.512717	-0.17368	-8.1066E-05	0.30423	0.000142	0.13055	6.0935E-05	466.763721816889	23.433	0.74908	23.433	23.224	23.973	0					39	25	2	0	0	0	0.027083	2	3426	3426;3478		92.491	52.534	1	240600			49796	5239	28451	28452	60864;60865	60864					0.04422088760088627
TTGHLIYK	8	Unmodified	_TTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.76373291015625	2	466.763635	931.512717	-0.073565	-3.4337E-05	0.14978	6.9912E-05	0.076215	3.5574E-05	466.7636471933991	23.552	0.67754	23.479	23.257	23.935	-0.072559					43	23	2	0	0	0	0.04227	1	3462	3462		81.89	41.933	1	230670			49797	5239	28451	28452	60866	60866					0.04422088760088627
TTGHLIYK	8	Unmodified	_TTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.76348876953125	2	466.763635	931.512717	0.24254	0.00011321	-0.18871	-8.8085E-05	0.053826	2.5124E-05	466.76349023229176	23.565	0.76419	23.526	23.255	24.02	-0.038927					41	26	2	0	0	0	0.12959	1	3463	3463		74.929	42.624	1	255480			49798	5239	28451	28452	60867	60867					0.04422088760088627
TTGRQSRGA	9	Unmodified	_TTGRQSRGA_					0	0	0		ENST00000378827.4_1_20:6748685-6748922:+|nuORF	ENST00000378827.4_1_20:6748685-6748922:+|nuORF	ENST00000378827.4_1_20:6748685-6748922:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7637939453125	2	467.246672	932.478791	-0.15074	-7.0431E-05	0.5232	0.00024446	0.37246	0.00017403	467.24668655387524	23.515	1.1942	23.515	23.173	24.367	0					55	41	2	0	0	0	0.31038	1	3502	3502		7.2892	7.2892	1	122820			49799	9963	28452	28453	60868	60868					0.009850603210566078
TTHITKTVK	9	Unmodified	_TTHITKTVK_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;ENST00000452150.6_1_6:131179278-131188835:-|nuORF;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3	nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2588500976562	2	514.808574	1027.60259	-0.227	-0.00011686	-1.562	-0.00080413	-1.789	-0.000921	514.8080345249834	12.847	0.14877	12.779	12.702	12.851	-0.067496					8	4	2	0	0	0	0.25689	1	253	253		7.609	2.3121	1	48590			49800	1142;1200	28453	28454	60869	60869					0.0898971836866167
TTHLELNEL	9	Unmodified	_TTHLELNEL_					0	0	0			REV__ENSG00000122376|ENST00000298786|SHLD2	REV__ENSG00000122376|ENST00000298786|SHLD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.798583984375	2	535.279846	1068.54514	0.48931	0.00026192	-1.6665	-0.00089206	-1.1772	-0.00063014	535.2787877846926	55.379	0.56702	55.36	55.129	55.696	-0.019081					39	20	3	0	0	0	0.18803	1	13182	13182		25.399	2.2509	1	588320	+		49801	15155	28454	28455	60870	60870					0.013608313724262189
TTHLHCMV	8	Unmodified	_TTHLHCMV_					0	0	0		ENST00000268613.14_1_16:82660697-82673015:+|nuORF	ENST00000268613.14_1_16:82660697-82673015:+|nuORF	ENST00000268613.14_1_16:82660697-82673015:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.8006896972656	2	471.220223	940.425892	0.073327	3.4553E-05	0.77248	0.00036401	0.84581	0.00039856	471.22083565642066	24.482	0.085665	24.443	24.392	24.478	-0.038927					4	2	2	0	0	0	0.344	1	3765	3765		2.5775	0	1	17046			49802	9068	28455	28456	60871	60871					-0.046703570576255515
TTHQAIHTGEK	11	Unmodified	_TTHQAIHTGEK_					0	0	0		ENSG00000197497|ENST00000396424|ZNF665	ENSG00000197497|ENST00000396424|ZNF665	ENSG00000197497|ENST00000396424|ZNF665	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.54522705078125	3	408.210676	1221.6102	-0.17118	-6.9879E-05	0.53669	0.00021908	0.36551	0.00014921	408.2109425021793	17.405	0.87342	17.287	16.993	17.866	-0.11739					73	30	4	0	0	0	0.32905	1	1649	1649		8.2864	3.2389	1	440050			49803	7969	28456	28457	60872	60872					0.008258258982550615
TTIAEPRRHED	11	Unmodified	_TTIAEPRRHED_					0	0	0			REV__ENSG00000175727|ENST00000319080|MLXIP	REV__ENSG00000175727|ENST00000319080|MLXIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.2585754394531	3	442.224985	1323.65313	0.19264	8.5191E-05	-1.1715	-0.00051805	-0.97883	-0.00043286	442.22441371450867	20.26	0.6349	20.26	19.96	20.594	0					38	23	2	0	0	0	0.33146	1	2419	2419		4.1166	0	1	111500	+		49804	17906	28457	28458	60873	60873					0.004245959557010792
TTIAVEVKK	9	Unmodified	_TTIAVEVKK_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2771911621094	2	494.8055	987.596446	0.30171	0.00014929	-0.27622	-0.00013668	0.025491	1.2613E-05	494.80519251010355	23.672	0.42509	23.6	23.396	23.821	-0.072559					21	14	2	0	0	0	0.25527	1	3516	3516		8.7454	1.4562	1	73547			49805	2669	28458	28459	60874	60874					0.10215200137145075
TTIEGHVVK	9	Unmodified	_TTIEGHVVK_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1	ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.27947998046875	2	492.279649	982.544745	0.34635	0.0001705	-0.017547	-8.638E-06	0.3288	0.00016186	492.27924246685194	21.621	0.87947	21.572	20.951	21.83	-0.049377					69	30	3	0	0	0	0.14786	1	2880	2880		31.268	5.869	1	201780			49806	4991;2695	28459	28460	60875	60875					0.05277456443252504
TTIEIIQN	8	Unmodified	_TTIEIIQN_					0	0	0		L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|12|1|sense	L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|12|1|sense	L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|12|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.8049011230469	2	466.258382	930.502212	-0.064536	-3.0091E-05	-0.51834	-0.00024168	-0.58288	-0.00027177	466.25792502118077	62.024	0.82367	62.024	61.389	62.213	0					54	30	3	0	0	0	0.33988	1	15185	15185		18.146	8.7989	1	391360			49807	12466	28460	28461	60876	60876					0.03418061315005616
TTIEIIQN	8	Unmodified	_TTIEIIQN_					0	0	0		L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|12|1|sense	L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|12|1|sense	L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|12|1|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	466.258382	930.502212	-0.32882	-0.00015331	-0.77686	-0.00036222	-1.1057	-0.00051553	466.2580160330104	61.885	0.52541	61.982	61.729	62.254	0.096985	-0.0086352	-4.6201E-05	NaN	18.146	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377390			49808	12466	28460	28461							0.03418061315005616
TTIEIIQN	8	Unmodified	_TTIEIIQN_					0	0	0		L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|12|1|sense	L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|12|1|sense	L1MEc_dup6794|chr6:25851076-25853406:-|2.4754799080055183|0.2216738180985241|3.48|518.0|12|1|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	466.258382	930.502212	0.021024	9.8028E-06	-0.85994	-0.00040095	-0.83891	-0.00039115	466.2579566809787	61.974	1.2457	61.965	61.4	62.646	-0.0085564	-0.024774	-0.00012367	NaN	18.146	71	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379200			49809	12466	28460	28461							0.03418061315005616
TTIHQQAQSLN	11	Unmodified	_TTIHQQAQSLN_					0	0	0			REV__HIPK2|p.G1125Afs*22|1|0.19|ENSG00000064393|chr7:139573150-139573150|C/-|frameshift_variant	REV__HIPK2|p.G1125Afs*22|1|0.19|ENSG00000064393|chr7:139573150-139573150|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.8175048828125	2	620.817658	1239.62076	0.25928	0.00016096	-0.15294	-9.4949E-05	0.10633	6.6014E-05	620.8176002581661	17.168	1.1818	17.168	16.895	18.077	0					132	40	5	0	0	0	0.46842	1	1687	1687		4.897	4.897	1	4116300	+		49810	13644	28461	28462	60877	60877					0.010538085527286967
TTILHKKRSR	10	Unmodified	_TTILHKKRSR_					0	0	0			REV__nc|ENSG00000244005|Q9Y697-2|NFS1	REV__nc|ENSG00000244005|Q9Y697-2|NFS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.56292724609375	3	413.926322	1238.75714	-0.26977	-0.00011167	0.0061233	2.5346E-06	-0.26365	-0.00010913	413.9260349145055	15.568	0.23477	15.568	15.471	15.706	0					10	7	2	0	0	0	0.32165	1	1086	1086		0.69767	0.07084	1	12442	+		49811	19197	28462	28463	60878	60878					0.1473096757388248
TTIQRKYF	8	Unmodified	_TTIQRKYF_					0	0	0		ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3160400390625	2	528.795466	1055.57638	0.5713	0.0003021	-0.11866	-6.2744E-05	0.45264	0.00023936	528.7961021110574	36.326	0.36627	36.408	36.284	36.651	0.082359					22	12	3	0	0	0	0.32778	1	7390	7390		14.582	0	1	396660			49812	721	28463	28464	60879	60879					0.0508144919717779
TTISAEKVKKK	11	Unmodified	_TTISAEKVKKK_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.F1622Lfs*17|1|0.09|ENSG00000120800|chr12:101346566-101346567|-/TTTAGTATCGTATTCTC|frameshift_variant	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.23602294921875	3	411.590605	1231.74999	-0.39116	-0.000161	-0.46503	-0.0001914	-0.85619	-0.0003524	411.590322493423	12.855	0.20101	12.855	12.724	12.925	0					18	6	4	0	0	0	0.33334	1	239	239		1.2148	0.588	1	52720			49813	2965	28464	28465	60880	60880					0.14338190182797916
TTISTHLR	8	Unmodified	_TTISTHLR_					0	0	0		ENSG00000163288|ENST00000295454|GABRB1;GABRB1|p.K304Sfs*3|1|0.2|ENSG00000163288|chr4:47406756-47406757|AA/-|frameshift_variant	ENSG00000163288|ENST00000295454|GABRB1	ENSG00000163288|ENST00000295454|GABRB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.25811767578125	2	464.764166	927.513779	-0.16564	-7.6982E-05	-0.13952	-6.4846E-05	-0.30516	-0.00014183	464.76418306336205	25.634	0.62432	25.634	25.384	26.009	0					57	21	4	0	0	0	0.42446	1	4173	4173		14.582	3.7578	1	670670			49814	5661	28465	28466	60881	60881					0.04712303128997064
TTISTHLR	8	Unmodified	_TTISTHLR_					0	0	0		ENSG00000163288|ENST00000295454|GABRB1;GABRB1|p.K304Sfs*3|1|0.2|ENSG00000163288|chr4:47406756-47406757|AA/-|frameshift_variant	ENSG00000163288|ENST00000295454|GABRB1	ENSG00000163288|ENST00000295454|GABRB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	464.764166	927.513779	-0.046035	-2.1396E-05	-0.32965	-0.00015321	-0.37568	-0.0001746	464.764016703066	25.688	0.56893	25.666	25.444	26.013	-0.022236	0.015951	-5.8633E-05	NaN	14.582	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	743350			49815	5661	28465	28466							0.04712303128997064
TTKASRKR	8	Unmodified	_TTKASRKR_					0	0	0		KIF2B|p.K657Rfs*3|1|0.2|ENSG00000141200|chr17:53825000-53825000|A/-|frameshift_variant;ENSG00000141200|ENST00000268919|KIF2B	KIF2B|p.K657Rfs*3|1|0.2|ENSG00000141200|chr17:53825000-53825000|A/-|frameshift_variant	KIF2B|p.K657Rfs*3|1|0.2|ENSG00000141200|chr17:53825000-53825000|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.29083251953125	2	474.290882	946.567212	0.19114	9.0657E-05	0.032174	1.526E-05	0.22332	0.00010592	474.2907796338292	71.479	1.8231	71.479	70.873	72.696	0					207	65	4	0	0	0	0.44569	1	18267	18267		7.2892	7.2892	1	2291700			49816	4358	28466	28467	60882	60882					0.09179100631513393
TTKASRKR	8	Unmodified	_TTKASRKR_					0	0	0		KIF2B|p.K657Rfs*3|1|0.2|ENSG00000141200|chr17:53825000-53825000|A/-|frameshift_variant;ENSG00000141200|ENST00000268919|KIF2B	KIF2B|p.K657Rfs*3|1|0.2|ENSG00000141200|chr17:53825000-53825000|A/-|frameshift_variant	KIF2B|p.K657Rfs*3|1|0.2|ENSG00000141200|chr17:53825000-53825000|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2908935546875	2	474.290882	946.567212	0.33668	0.00015968	-0.14524	-6.8886E-05	0.19144	9.0798E-05	474.2907060436796	71.591	1.9657	71.563	70.854	72.82	-0.027275					229	70	4	0	0	0	0.45544	1	18240	18240		3.9444	3.9444	1	2573300			49817	4358	28466	28467	60883	60883					0.09179100631513393
TTKKKLEVL	9	Unmodified	_TTKKKLEVL_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;nc|ENSG00000111679|P29350-2|PTPN6;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6;ENST00000539029.5_1_12:7068505-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.24609375	2	530.342249	1058.66995	0.40793	0.00021634	-0.16842	-8.9322E-05	0.23951	0.00012702	530.3417404470933	22.114	0.33821	22.114	21.94	22.278	0					16	11	2	0	0	0	0.25879	1	3057	3057		4.756	0	1	67579			49818	10317	28467	28468	60884	60884					0.14295748579615974
TTKKKLEVL	9	Unmodified	_TTKKKLEVL_					0	0	0		ENST00000416215.6_1_12:7061038-7070080:+|nuORF;nc|ENSG00000111679|P29350-2|PTPN6;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6;ENST00000539029.5_1_12:7068505-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	ENST00000416215.6_1_12:7061038-7070080:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7470703125	2	530.342249	1058.66995	0.30285	0.00016061	0.013073	6.9329E-06	0.31592	0.00016755	530.3420914797201	22.284	0.70608	22.183	22.017	22.723	-0.10034					31	25	2	0	0	0	0.25879	1	3122	3122		4.756	0	1	50410			49819	10317	28467	28468	60885	60885					0.14295748579615974
TTKKLSTLQSA	11	Unmodified	_TTKKLSTLQSA_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.I1184Yfs*28|1|0.26|ENSG00000118058|chr11:118478180-118478181|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3414916992188	2	589.342978	1176.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.48	1	118.48	117.98	118.98	0								0	0	0	0.3823	1	30602	30602		0	0	1				49820	2814	28468	28469	60886	60886					0.09013337877718186
TTKKLSTLQSA	11	Unmodified	_TTKKLSTLQSA_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.I1184Yfs*28|1|0.26|ENSG00000118058|chr11:118478180-118478181|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3411254882812	2	589.342978	1176.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.65	1	118.65	118.15	119.15	0								0	0	0	0.3823	1	30641	30641		0	0	1				49821	2814	28468	28469	60887	60887					0.09013337877718186
TTKKLSTLQSA	11	Unmodified	_TTKKLSTLQSA_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.I1184Yfs*28|1|0.26|ENSG00000118058|chr11:118478180-118478181|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3424072265625	2	589.342978	1176.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.15	1	119.15	118.65	119.65	0								0	0	0	0.3823	1	30757	30757		0	0	1				49822	2814	28468	28469	60888	60888					0.09013337877718186
TTKKLSTLQSA	11	Unmodified	_TTKKLSTLQSA_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.I1184Yfs*28|1|0.26|ENSG00000118058|chr11:118478180-118478181|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.343505859375	2	589.342978	1176.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.43	1	119.43	118.93	119.93	0								0	0	0	0.3823	1	30815	30815		0	0	1				49823	2814	28468	28469	60889	60889					0.09013337877718186
TTKKLSTLQSA	11	Unmodified	_TTKKLSTLQSA_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.I1184Yfs*28|1|0.26|ENSG00000118058|chr11:118478180-118478181|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3441772460938	2	589.342978	1176.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.94	1	115.92	115.42	116.42	-0.020988								0	0	0	0.3823	1	30050	30050		0	0	1				49824	2814	28468	28469	60890	60890					0.09013337877718186
TTKKLSTLQSA	11	Unmodified	_TTKKLSTLQSA_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.I1184Yfs*28|1|0.26|ENSG00000118058|chr11:118478180-118478181|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.34326171875	2	589.342978	1176.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.8	1	116.77	116.27	117.27	-0.022781								0	0	0	0.3823	1	30248	30248		0	0	1				49825	2814	28468	28469	60891	60891					0.09013337877718186
TTKKPPLAQK	10	Unmodified	_TTKKPPLAQK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;ENST00000538236.1_1_12:123345767-123346160:+|nuORF	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3450927734375	2	556.345323	1110.67609	-0.030925	-1.7205E-05	-0.4521	-0.00025152	-0.48302	-0.00026873	556.3450599242545	12.98	0.3587	12.98	12.815	13.174	0					26	12	4	0	0	0	0.31958	1	295	295		5.2969	0.39987	1	118110			49826	3515	28469	28470	60892	60892					0.12518266811139256
TTKKPPLAQK	10	Unmodified	_TTKKPPLAQK_					0	0	0		ENSG00000130787|ENST00000253083|HIP1R;ENST00000538236.1_1_12:123345767-123346160:+|nuORF	ENSG00000130787|ENST00000253083|HIP1R	ENSG00000130787|ENST00000253083|HIP1R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8307495117188	2	556.345323	1110.67609	-0.0033579	-1.8682E-06	-0.23756	-0.00013217	-0.24092	-0.00013404	556.34516240749	13.038	0.3433	12.939	12.785	13.129	-0.099291					28	11	4	0	0	0	0.32088	1	294	294		2.7352	1.2533	1	105640			49827	3515	28469	28470	60893	60893					0.12518266811139256
TTKKRTLRKN	10	Unmodified	_TTKKRTLRKN_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2;ENSG00000182541|ENST00000331728|LIMK2;ENST00000482270.5_1_22:31668491-31671520:+|nuORF	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.389404296875	2	623.391128	1244.7677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.97	1	102.98	102.48	103.48	0.016685								0	0	0	0.38166	1	27378	27378		1.4819	0	1				49828	12873	28470	28471	60894	60894					0.1551095022834943
TTKKRTLRKN	10	Unmodified	_TTKKRTLRKN_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2;ENSG00000182541|ENST00000331728|LIMK2;ENST00000482270.5_1_22:31668491-31671520:+|nuORF	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.3900146484375	2	623.391128	1244.7677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.09	1	103.1	102.6	103.6	0.0082703								0	0	0	0.38166	1	27410	27410		1.4819	0	1				49829	12873	28470	28471	60895	60895					0.1551095022834943
TTKKRTLRKN	10	Unmodified	_TTKKRTLRKN_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2;ENSG00000182541|ENST00000331728|LIMK2;ENST00000482270.5_1_22:31668491-31671520:+|nuORF	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.3899536132812	2	623.391128	1244.7677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.5	1	103.51	103.01	104.01	0.0082703								0	0	0	0.38166	1	27506	27506		1.4819	0	1				49830	12873	28470	28471	60896	60896					0.1551095022834943
TTKKRTLRKN	10	Unmodified	_TTKKRTLRKN_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2;ENSG00000182541|ENST00000331728|LIMK2;ENST00000482270.5_1_22:31668491-31671520:+|nuORF	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.7232666015625	2	623.391128	1244.7677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.34	1	103.34	102.84	103.84	-0.0011139								0	0	0	0.38166	1	27496	27496		1.4819	0	1				49831	12873	28470	28471	60897	60897					0.1551095022834943
TTKKRTLRKN	10	Unmodified	_TTKKRTLRKN_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2;ENSG00000182541|ENST00000331728|LIMK2;ENST00000482270.5_1_22:31668491-31671520:+|nuORF	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.3897705078125	2	623.391128	1244.7677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.36	1	103.36	102.86	103.86	-0.0011139								0	0	0	0.38166	1	27500	27500		1.4819	0	1				49832	12873	28470	28471	60898	60898					0.1551095022834943
TTKLPRVLS	9	Unmodified	_TTKLPRVLS_					0	0	0		nc|ENSG00000214050|Q8IX29-2|FBXO16;ENSG00000214050|ENST00000380254|FBXO16;ENST00000517436.5_1_8:28309874-28347735:-|nuORF	nc|ENSG00000214050|Q8IX29-2|FBXO16	nc|ENSG00000214050|Q8IX29-2|FBXO16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2579650878906	2	507.818941	1013.62333	0.22161	0.00011254	0.34899	0.00017722	0.5706	0.00028976	507.8192950676776	31.704	0.47643	31.704	31.423	31.9	0					25	16	2	0	0	0	0.22596	1	5969	5969		15.847	0	1	400230			49833	8376	28471	28472	60899	60899					0.1170630874833023
TTKMERNQSR	10	Unmodified	_TTKMERNQSR_					0	0	0		L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|119|3|sense	L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|119|3|sense	L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|119|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.22943115234375	3	417.547182	1249.61972	-0.35057	-0.00014638	3.3291	0.0013901	2.9785	0.0012437	417.54868114227565	14.162	0.3728	14.162	13.992	14.365	0					20	12	2	0	0	0	0.32015	1	627	627		5.0475	0.3316	1	65354			49834	12486	28472	28473	60900	60900					0.004892709121349981
TTKMRKYRQLV	11	Unmodified	_TTKMRKYRQLV_					0	0	0		chr6:166929791-166934091|245|24.13|0.73|5.05|-|1|RNASET2,RNASET2|2	chr6:166929791-166934091|245|24.13|0.73|5.05|-|1|RNASET2,RNASET2|2	chr6:166929791-166934091|245|24.13|0.73|5.05|-|1|RNASET2,RNASET2|2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.6127014160156	3	475.278256	1422.81294	0.51455	0.00024456	0.034249	1.6278E-05	0.5488	0.00026083	475.2781617466958	55.072	1.1242	55.14	54.727	55.851	0.067966					136	41	4	0	0	0	0.47633	1	13056	13056		1.2148	0	1	2548900			49835	172	28473	28474	60901	60901					0.1184443269919484
TTLAFKPIKK	10	Unmodified	_TTLAFKPIKK_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2855834960938	2	573.865892	1145.71723	0.27893	0.00016007	0.48245	0.00027686	0.76138	0.00043693	573.8658657395506	26.916	0.20218	26.895	26.813	27.015	-0.021412					9	6	2	0	0	0	0.32072	1	4487	4487		1.1933	0.88631	1	49920			49836	3587	28474	28475	60902	60902					0.15020027850596307
TTLAFPPV	8	Unmodified	_TTLAFPPV_					0	0	0		ENST00000445816.5_1_15:44085996-44086706:+|nuORF;nc|ENSG00000140264|P84101-3|SERF2;nc|ENSG00000140264|P84101-2|SERF2	ENST00000445816.5_1_15:44085996-44086706:+|nuORF	ENST00000445816.5_1_15:44085996-44086706:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5818786621094	2	423.242004	844.469455	0.10524	4.4544E-05	0.44685	0.00018913	0.5521	0.00023367	423.2421789598523	89.524	0.40506	89.523	89.306	89.711	-0.00080872					46	29	2	0	0	0	0.34247	1	23669	23669		2.0598	0	1	191460			49837	10589	28475	28476	60903	60903					0.04099898982804007
TTLCSAWLL	9	Unmodified	_TTLCSAWLL_					0	0	0		nc|ENSG00000112541|A8K010|LINC00473;ENST00000455853.1_1_6:166353685-166401023:-|nuORF	nc|ENSG00000112541|A8K010|LINC00473	nc|ENSG00000112541|A8K010|LINC00473	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.274169921875	2	504.265153	1006.51575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.296	1	43.38	42.88	43.88	0.083996								0	0	0	0.20238	1	9487	9487		21.747	2.3076	1				49838	10692	28476	28477	60904	60904					0.012755958225966424
TTLDQRSL	8	Unmodified	_TTLDQRSL_					0	0	0			REV__nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	REV__nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2535705566406	2	467.253631	932.49271	-0.13607	-6.3581E-05	-0.029903	-1.3972E-05	-0.16598	-7.7554E-05	467.2535335932033	26.092	0.76293	26.092	25.823	26.586	0					58	26	4	0	0	0	0.25425	1	4215	4215		36.044	1.1121	1	880950	+		49839	15474	28477	28478	60905	60905					0.023762930294765283
TTLFVYIS	8	Unmodified	_TTLFVYIS_					0	0	0		ENST00000269080.6_1_17:66937053-66938107:-|nuORF	ENST00000269080.6_1_17:66937053-66938107:-|nuORF	ENST00000269080.6_1_17:66937053-66938107:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2765197753906	2	472.260394	942.506234	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.118	1	31.118	30.618	31.618	0								0	0	0	0.36169	1	5777	5777		9.3474	0.75416	1				49840	9071	28478	28479	60906	60906					0.03268150808708015
TTLGHAVLK	9	Unmodified	_TTLGHAVLK_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.284912109375	2	470.284734	938.554916	-0.11334	-5.3304E-05	0.52557	0.00024717	0.41223	0.00019387	470.28469039173575	23.494	0.57176	23.494	23.197	23.769	0					41	19	3	0	0	0	0.11234	1	3461	3461		51.63	22.548	1	175090			49841	4268	28479	28480	60907	60907					0.08318064168474848
TTLGHAVLK	9	Unmodified	_TTLGHAVLK_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2846984863281	2	470.284734	938.554916	0.017731	8.3386E-06	0.44634	0.00020991	0.46407	0.00021825	470.28460495056083	23.593	0.57664	23.52	23.18	23.756	-0.072559					42	20	3	0	0	0	0.11234	1	3498	3498		51.63	22.548	1	176570			49842	4268	28479	28480	60908	60908					0.08318064168474848
TTLGHAVLK	9	Unmodified	_TTLGHAVLK_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2848205566406	2	470.284734	938.554916	0.26629	0.00012523	0.075646	3.5575E-05	0.34194	0.00016081	470.2845487456985	23.568	0.48033	23.529	23.339	23.82	-0.038927					42	16	3	0	0	0	0.13643	1	3498	3498		45.7	16.618	1	158530			49843	4268	28479	28480	60909	60909					0.08318064168474848
TTLGPLNQP	9	Unmodified	_TTLGPLNQP_					0	0	0		ENST00000590758.3_1_17:42883048-42908178:-|nuORF	ENST00000590758.3_1_17:42883048-42908178:-|nuORF	ENST00000590758.3_1_17:42883048-42908178:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.284912109375	2	470.758549	939.502546	-0.13117	-6.1751E-05	0.35002	0.00016478	0.21885	0.00010302	470.75850179576287	23.377	0.5729	23.377	22.996	23.569	0					32	19	2	0	0	0	0.2451	1	3461	3461		15.847	0	1	72424			49844	12176	28480	28481	60910	60910					0.03037481034857592
TTLGPLNQP	9	Unmodified	_TTLGPLNQP_					0	0	0		ENST00000590758.3_1_17:42883048-42908178:-|nuORF	ENST00000590758.3_1_17:42883048-42908178:-|nuORF	ENST00000590758.3_1_17:42883048-42908178:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2846984863281	2	470.758549	939.502546	0.0019199	9.0379E-07	0.01596	7.5132E-06	0.01788	8.417E-06	470.75859299465765	23.458	0.69211	23.371	22.993	23.685	-0.087608					38	24	2	0	0	0	0.2451	1	3498	3498		15.847	0	1	87782			49845	12176	28480	28481	60911	60911					0.03037481034857592
TTLLCLWK	8	Unmodified	_TTLLCLWK_					0	0	0		nc|ENSG00000080824|P07900-2|HSP90AA1	nc|ENSG00000080824|P07900-2|HSP90AA1	nc|ENSG00000080824|P07900-2|HSP90AA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.268798828125	2	489.278063	976.541574	0.46295	0.00022651	1.3464	0.00065878	1.8094	0.0008853	489.2785741165055	36.223	0.93763	36.305	36.09	37.027	0.082359					46	33	2	0	0	0	0.26527	1	7352	7352		36.044	0	1	359600			49846	12596	28481	28482	60912	60912					0.05236490064874033
TTLPPPLFSK	10	Unmodified	_TTLPPPLFSK_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;nc|ENSG00000174227|Q5H8A4-4|PIGG;ENST00000502311.1_1_4:493115-495466:+|nuORF	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.8211059570312	2	550.82115	1099.62775	0.60516	0.00033333	-0.16286	-8.9706E-05	0.4423	0.00024363	550.8207651108368	53.972	2.0696	53.972	52.767	54.837	0					154	76	3	0	0	0	0.25219	1	12715	12715		26.268	0	1	752940			49847	6780	28482	28483	60913	60913					0.08191773171233763
TTLPPPLFSK	10	Unmodified	_TTLPPPLFSK_					0	0	0		nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;nc|ENSG00000174227|Q5H8A4-4|PIGG;ENST00000502311.1_1_4:493115-495466:+|nuORF	nc|ENSG00000174227|Q5H8A4-3|PIGG	nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.8211669921875	2	550.82115	1099.62775	0.53134	0.00029267	0.12991	7.1557E-05	0.66125	0.00036423	550.8209062069598	53.876	2.1932	53.866	52.737	54.931	-0.0096054					174	80	3	0	0	0	0.24727	1	12769	12769		32.037	1.4009	1	767990			49848	6780	28482	28483	60914	60914					0.08191773171233763
TTLQRDML	8	Unmodified	_TTLQRDML_					0	0	0		ENST00000426910.1_1_X:134568027-134569581:+|nuORF	ENST00000426910.1_1_X:134568027-134569581:+|nuORF	ENST00000426910.1_1_X:134568027-134569581:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.26898193359375	2	489.257859	976.501166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.258	1	36.258	35.758	36.758	0								0	0	0	0.34229	1	7347	7347		18.135	0	1				49849	10426	28483	28484	60915	60915					0.011975236744547146
TTLREDSKRD	10	Unmodified	_TTLREDSKRD_					0	0	0			REV__ENST00000435191.1_1_3:48223039-48223213:+|nuORF	REV__ENST00000435191.1_1_3:48223039-48223213:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.21087646484375	3	407.545836	1219.61568	-0.20901	-8.5181E-05	1.4365	0.00058546	1.2275	0.00050028	407.546331934752	17.259	0.40468	17.141	16.884	17.289	-0.11739					18	14	2	0	0	0	0.32082	1	1604	1604		3.3196	0	1	34732	+		49850	20992	28484	28485	60916	60916					0.014655046900998059
TTLRKAFLAQS	11	Unmodified	_TTLRKAFLAQS_					0	0	0		nc|nan|Q3SXR2|C3orf36	nc|nan|Q3SXR2|C3orf36	nc|nan|Q3SXR2|C3orf36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.3583984375	2	618.358962	1234.70337	0.24025	0.00014856	-0.57962	-0.00035842	-0.33937	-0.00020986	618.3586828612711	91.173	0.4992	91.173	90.995	91.494	0					79	36	3	0	0	0	0.46655	1	24235	24235		2.4985	1.0166	1	947290			49851	13026	28485	28486	60917	60917					0.0954075035151618
TTLRKAFLAQS	11	Unmodified	_TTLRKAFLAQS_					0	0	0		nc|nan|Q3SXR2|C3orf36	nc|nan|Q3SXR2|C3orf36	nc|nan|Q3SXR2|C3orf36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.3584594726562	2	618.358962	1234.70337	0.15364	9.5004E-05	-0.40372	-0.00024965	-0.25009	-0.00015464	618.3588326001435	91.131	0.50365	91.222	90.983	91.487	0.090668					82	36	3	0	0	0	0.44828	1	24194	24194		4.897	1.3005	1	1156200			49852	13026	28485	28486	60918	60918					0.0954075035151618
TTLRKAFLAQS	11	Unmodified	_TTLRKAFLAQS_					0	0	0		nc|nan|Q3SXR2|C3orf36	nc|nan|Q3SXR2|C3orf36	nc|nan|Q3SXR2|C3orf36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.3587036132812	2	618.358962	1234.70337	0.36006	0.00022265	-0.82014	-0.00050714	-0.46007	-0.00028449	618.3586519414322	91.181	0.53757	91.181	90.995	91.533	0.00046539					83	35	3	0	0	0	0.44828	2	24225	24178;24225		4.897	1.3005	1	1637800			49853	13026	28485	28486	60919;60920	60920					0.0954075035151618
TTLRKKKKG	9	Unmodified	_TTLRKKKKG_					0	0	0		nc|ENSG00000157119|Q2TBA0-2|KLHL40;ENSG00000157119|ENST00000287777|KLHL40	nc|ENSG00000157119|Q2TBA0-2|KLHL40	nc|ENSG00000157119|Q2TBA0-2|KLHL40	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3538818359375	2	530.353483	1058.69241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.69	1	113.67	113.17	114.17	-0.017303								0	0	0	0.26829	1	29545	29545		0	0	1				49854	5282	28486	28487	60921	60921					0.16541392767908292
TTLSSIRSK	9	Unmodified	_TTLSSIRSK_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.F753Sfs*5|1|0.07|ENSG00000173193|chr3:122700811-122700812|-/C|frameshift_variant	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7901306152344	2	496.790381	991.566209	0.23294	0.00011572	-0.0064967	-3.2275E-06	0.22645	0.0001125	496.7901798309059	18.61	0.59486	18.61	18.269	18.864	0					40	20	3	0	0	0	0.21447	1	1972	1972		21.537	3.3906	1	75638			49855	6700	28487	28488	60922	60922					0.07008841471963478
TTLSSIRSK	9	Unmodified	_TTLSSIRSK_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.F753Sfs*5|1|0.07|ENSG00000173193|chr3:122700811-122700812|-/C|frameshift_variant	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7904357910156	2	496.790381	991.566209	0.21008	0.00010436	0.79803	0.00039645	1.0081	0.00050082	496.7909437052784	18.678	0.79192	18.561	18.184	18.975	-0.11739					38	27	2	0	0	0	0.15173	1	2013	2013		30.703	6.9137	1	104560			49856	6700	28487	28488	60923	60923					0.07008841471963478
TTLSSIRSK	9	Unmodified	_TTLSSIRSK_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;PARP14|p.F753Sfs*5|1|0.07|ENSG00000173193|chr3:122700811-122700812|-/C|frameshift_variant	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7903137207031	2	496.790381	991.566209	-0.0012208	-6.065E-07	0.89025	0.00044227	0.88903	0.00044166	496.7910867680024	18.658	0.64544	18.6	18.255	18.901	-0.058172					43	22	3	0	0	0	0.22215	1	2017	2017		20.415	3.3016	1	112710			49857	6700	28487	28488	60924	60924					0.07008841471963478
TTLSTFVALF	10	Unmodified	_TTLSTFVALF_					0	0	0		nc|ENSG00000211898|P01880|IGHD	nc|ENSG00000211898|P01880|IGHD	nc|ENSG00000211898|P01880|IGHD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.8212890625	2	550.305332	1098.59611	0.33203	0.00018272	1.6657	0.00091665	1.9978	0.0010994	550.3044922206584	53.709	0.13014	53.765	53.714	53.845	0.056255					8	4	3	0	0	0	0.21644	1	12723	12723		30.637	6.616	1	126790			49858	12935	28488	28489	60925	60925					0.05075780417269016
TTLSTLVML	9	Unmodified	_TTLSTLVML_					0	0	0			REV__ENST00000414276.6_1_1:150238017-150238101:-|nuORF	REV__ENST00000414276.6_1_1:150238017-150238101:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2694091796875	2	489.780636	977.546719	0.41769	0.00020457	0.442	0.00021648	0.85968	0.00042106	489.7809994380541	36.271	0.26514	36.271	36.093	36.358	0					12	9	2	0	0	0	0.25066	1	7298	7298		7.2892	0	1	162360	+		49859	20798	28489	28490	60926	60926					0.05704749136839382
TTLTHSSAL	9	Unmodified	_TTLTHSSAL_					0	0	0		ENST00000504528.2_1_4:113747508-113747850:+|nuORF	ENST00000504528.2_1_4:113747508-113747850:+|nuORF	ENST00000504528.2_1_4:113747508-113747850:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7478942871094	2	465.748182	929.481811	0.030625	1.4263E-05	0.24579	0.00011448	0.27642	0.00012874	465.7481983515331	21.603	0.81944	21.603	21	21.819	0					70	28	4	0	0	0	0.17787	1	2837	2837		26.884	1.8927	1	259880			49860	11300	28490	28491	60927	60927					0.014248906551870277
TTLTHSSAL	9	Unmodified	_TTLTHSSAL_					0	0	0		ENST00000504528.2_1_4:113747508-113747850:+|nuORF	ENST00000504528.2_1_4:113747508-113747850:+|nuORF	ENST00000504528.2_1_4:113747508-113747850:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.747802734375	2	465.748182	929.481811	0.20336	9.4714E-05	0.3206	0.00014932	0.52396	0.00024403	465.74824891628833	21.596	0.73819	21.546	21.036	21.774	-0.049377					65	25	4	0	0	0	0.17787	1	2846	2846		26.884	2.8631	1	332000			49861	11300	28490	28491	60928	60928					0.014248906551870277
TTLTSVKIFTK	11	Unmodified	_TTLTSVKIFTK_					0	0	0			REV__ZNF208|p.W1096Cfs*4|1|0.15|ENSG00000160321|chr19:21971733-21971746|TAAGGTTTGAGGAC/-|frameshift_variant	REV__ZNF208|p.W1096Cfs*4|1|0.15|ENSG00000160321|chr19:21971733-21971746|TAAGGTTTGAGGAC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3734741210938	2	619.871371	1237.72819	-0.037362	-2.316E-05	-2.2291	-0.0013818	-2.2665	-0.0014049	619.8693202261267	96.923	0.42683	96.993	96.715	97.142	0.070465					65	40	2	0	0	0	0.46277	1	25901	25901		2.9952	1.5133	1	143400	+		49862	16897	28491	28492	60929	60929					0.11883385434225602
TTLTSVKIFTK	11	Unmodified	_TTLTSVKIFTK_					0	0	0			REV__ZNF208|p.W1096Cfs*4|1|0.15|ENSG00000160321|chr19:21971733-21971746|TAAGGTTTGAGGAC/-|frameshift_variant	REV__ZNF208|p.W1096Cfs*4|1|0.15|ENSG00000160321|chr19:21971733-21971746|TAAGGTTTGAGGAC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3734741210938	2	619.871371	1237.72819	-0.037362	-2.316E-05	-2.2291	-0.0013818	-2.2665	-0.0014049	619.8693202261267	96.923	0.42683	96.993	96.715	97.142	0.070465					65	40	2	0	0	0	0.33255	1	25901	25901		2.9952	1.5133	1	143400	+		49863	16897	28491	28492	60930	60930					0.11883385434225602
TTLVNTNSK	9	Unmodified	_TTLVNTNSK_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2747802734375	2	489.266739	976.518924	0.12457	6.0947E-05	-2.1205	-0.0010375	-1.996	-0.00097656	489.26568215070347	18.847	0.30577	18.73	18.556	18.862	-0.11739					17	10	2	0	0	0	0.23612	1	2075	2075		18.373	3.1246	1	26720			49864	620	28492	28493	60931	60931					0.029725622009550534
TTNDIVISK	9	Unmodified	_TTNDIVISK_					0	0	0		ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.254150390625	2	495.776939	989.539325	-0.012801	-6.3466E-06	0.32439	0.00016082	0.31159	0.00015448	495.7776863339843	28.108	0.70081	28.109	27.879	28.58	0.0004673					29	24	2	0	0	0	0.2061	1	4853	4853		31.636	20.141	1	339460			49865	2475	28493	28494	60932	60932					0.0441373286076896
TTNGGILTV	9	Unmodified	_TTNGGILTV_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2453918457031	2	438.245275	874.475997	0.35495	0.00015556	0.17643	7.7319E-05	0.53138	0.00023287	438.24523411099995	50.809	0.95758	50.856	50.522	51.479	0.046577					82	35	4	0	0	0	0.0018995	2	11833	11786;11833		111.29	29.674	1	2534100			49866	3029	28494	28495	60933;60934	60934					0.033737921435204044
TTNGGILTV	9	Unmodified	_TTNGGILTV_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.2452087402344	2	438.245275	874.475997	0.43729	0.00019164	-0.0013047	-5.7177E-07	0.43598	0.00019107	438.24514628280156	50.865	0.91672	50.874	50.511	51.428	0.0095634					93	34	4	0	0	0	0.0023784	2	11783	11783;11840		107.19	21.83	1	2653500			49867	3029	28494	28495	60935;60936	60935					0.033737921435204044
TTPEEILEKL	10	Unmodified	_TTPEEILEKL_					0	0	0		ENSG00000169609|ENST00000304177|C15orf40	ENSG00000169609|ENST00000304177|C15orf40	ENSG00000169609|ENST00000304177|C15orf40	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.823974609375	2	586.824086	1171.63362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.22	1	104.22	103.72	104.72	0.0011444								0	0	0	0.37044	1	27702	27702		6.2058	0	1				49868	6369	28495	28496	60937	60937					0.05466826892256904
TTPKYQLF	8	Unmodified	_TTPKYQLF_					0	0	0			REV__ENST00000482777.5_1_12:111890539-111890719:-|nuORF	REV__ENST00000482777.5_1_12:111890539-111890719:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.755615234375	2	499.271293	996.528032	0.37664	0.00018805	-0.27182	-0.00013571	0.10482	5.2333E-05	499.2712391967384	70.79	0.387	70.85	70.63	71.017	0.060783					22	13	2	0	0	0	0.33293	1	17940	17940		20.454	0	1	151580	+		49869	21507	28496	28497	60938	60938					0.02962955557291025
TTPLRLTVQ	9	Unmodified	_TTPLRLTVQ_					0	0	0			REV__ENST00000536130.1_1_12:123718068-123718410:+|nuORF	REV__ENST00000536130.1_1_12:123718068-123718410:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.813720703125	2	514.808574	1027.60259	-0.069098	-3.5572E-05	-1.4643	-0.00075382	-1.5334	-0.0007894	514.8078347889543	12.847	0.29144	12.748	12.578	12.869	-0.099291					7	5	2	0	0	0	0.34809	1	238	238		1.6526	0	1	41298	+		49870	22078	28497	28498	60939	60939					0.08989718368638933
TTPSGGWETT	10	Unmodified	_TTPSGGWETT_					0	0	0		ENST00000217131.5_1_20:57572688-57576600:-|nuORF	ENST00000217131.5_1_20:57572688-57576600:-|nuORF	ENST00000217131.5_1_20:57572688-57576600:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3169555664062	2	518.732729	1035.4509	0.36229	0.00018793	-1.8271	-0.00094779	-1.4648	-0.00075986	518.7317730702412	79.745	0.43184	79.807	79.568	80	0.061417					22	15	2	0	0	0	0.31358	1	20683	20683		13.906	7.7003	1	102490			49871	8822	28498	28499	60940	60940					-0.06540307449722604
TTQDPLSNK	9	Unmodified	_TTQDPLSNK_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;REV3L|p.N1558Kfs*2|1|0.35|ENSG00000009413|chr6:111373681-111373682|-/T|frameshift_variant	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2740173339844	2	502.256371	1002.49819	0.44957	0.0002258	-0.39796	-0.00019988	0.051604	2.5918E-05	502.2563225989537	21.119	0.92278	21.119	20.678	21.601	0					59	31	3	0	0	0	0.24247	1	2729	2729		17.443	1.5955	1	129650			49872	407	28499	28500	60941	60941					-0.0029602817870681974
TTQDPLSNK	9	Unmodified	_TTQDPLSNK_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;REV3L|p.N1558Kfs*2|1|0.35|ENSG00000009413|chr6:111373681-111373682|-/T|frameshift_variant	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2561340332031	2	502.256371	1002.49819	0.53284	0.00026762	-0.75778	-0.0003806	-0.22493	-0.00011297	502.2561611663951	21.318	0.81155	21.208	20.836	21.648	-0.11003					58	28	3	0	0	0	0.053988	1	2819	2819		51.415	1.8609	1	140760			49873	407	28499	28500	60942	60942					-0.0029602817870681974
TTQDPLSNK	9	Unmodified	_TTQDPLSNK_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;REV3L|p.N1558Kfs*2|1|0.35|ENSG00000009413|chr6:111373681-111373682|-/T|frameshift_variant	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2740783691406	2	502.256371	1002.49819	0.42739	0.00021466	-0.37141	-0.00018654	0.055985	2.8119E-05	502.2562538592004	21.187	0.82118	21.135	20.809	21.63	-0.05291					48	28	2	0	0	0	0.22179	1	2758	2758		26.021	9.8716	1	137250			49874	407	28499	28500	60943	60943					-0.0029602817870681974
TTQEITQLF	9	Unmodified	_TTQEITQLF_					0	0	0		nc|ENSG00000124222|O14662-6|STX16;nc|ENSG00000124222|O14662-2|STX16;nc|ENSG00000124222|O14662-4|STX16;nc|ENSG00000124222|O14662-5|STX16;ENSG00000124222|ENST00000371141|STX16	nc|ENSG00000124222|O14662-6|STX16	nc|ENSG00000124222|O14662-6|STX16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7830200195312	2	540.782222	1079.54989	0.4703	0.00025433	0.88526	0.00047873	1.3556	0.00073306	540.7824777777587	68.138	0.52556	68.138	67.911	68.436	0					46	19	3	0	0	0	0.07944	1	17210	17210		41.956	1.9982	1	605540			49875	3146	28500	28501	60944	60944					0.013297155151803963
TTQIKIKKP	9	Unmodified	_TTQIKIKKP_					0	0	0		ENSG00000167104|ENST00000349552|BPIFB6	ENSG00000167104|ENST00000349552|BPIFB6	ENSG00000167104|ENST00000349552|BPIFB6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3161010742188	2	528.842416	1055.67028	0.9227	0.00048796	-0.85674	-0.00045308	0.065964	3.4885E-05	528.8418777620054	36.675	0.49449	36.768	36.486	36.98	0.093014					31	17	2	0	0	0	0.25622	1	7437	7437		7.2892	2.5332	1	248940			49876	6147	28501	28502	60945	60945					0.14467168299461264
TTQIKIKKP	9	Unmodified	_TTQIKIKKP_					0	0	0		ENSG00000167104|ENST00000349552|BPIFB6	ENSG00000167104|ENST00000349552|BPIFB6	ENSG00000167104|ENST00000349552|BPIFB6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	528.842416	1055.67028	0.53897	0.00028503	-0.27995	-0.00014805	0.25903	0.00013698	528.8421477148889	36.615	0.51634	36.703	36.464	36.98	0.08741	-0.027349	0.00028686	NaN	3.9444	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242600			49877	6147	28501	28502							0.14467168299461264
TTQLRSRY	8	Unmodified	_TTQLRSRY_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7872314453125	2	512.780348	1023.54614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.497	1	47.54	47.04	48.04	0.04332								0	0	0	0.16508	1	10780	10780		49.933	9.9833	1				49878	1234	28502	28503	60946	60946					0.03531090531987502
TTQLSLSFK	9	Unmodified	_TTQLSLSFK_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.787353515625	2	512.787307	1023.56006	0.57758	0.00029617	-0.32203	-0.00016513	0.25555	0.00013104	512.786980320732	47.694	0.88865	47.694	47.38	48.268	0					63	31	4	0	0	0	8.7117E-05	2	10826	10826;10874		142.92	91.289	1	3124100			49879	8125	28503	28504	60947;60948	60947					0.04922323240418791
TTQLSLSFK	9	Unmodified	_TTQLSLSFK_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7874755859375	2	512.787307	1023.56006	0.51705	0.00026514	-0.36796	-0.00018869	0.14909	7.6451E-05	512.7869993808287	47.618	0.64894	47.666	47.4	48.049	0.04752					62	23	4	0	0	0	8.7117E-05	2	10832	10789;10832		142.92	89.086	1	3371200			49880	8125	28503	28504	60949;60950	60950					0.04922323240418791
TTQLSLSFK	9	Unmodified	_TTQLSLSFK_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7874755859375	2	512.787307	1023.56006	0.53306	0.00027335	-0.41127	-0.0002109	0.12179	6.2453E-05	512.7869957071939	47.598	0.55311	47.641	47.349	47.902	0.04332					57	20	4	0	0	0	0.0013573	1	10835	10835		118.21	58.136	1	3478100			49881	8125	28503	28504	60951	60951					0.04922323240418791
TTQVVGILK	9	Unmodified	_TTQVVGILK_					0	0	0		ENSG00000198898|ENST00000361183|CAPZA2;ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7877197265625	2	479.800217	957.585882	0.31107	0.00014925	-2.0918	-0.0010036	-1.7807	-0.00085437	479.7990229972409	40.607	0.34898	40.607	40.526	40.875	0					19	12	2	0	0	0	0.21447	2	8689	8689;8740		21.537	6.6987	1	198010			49882	8154	28504	28505	60952;60953	60952					0.10539217482710228
TTQVVGILK	9	Unmodified	_TTQVVGILK_					0	0	0		ENSG00000198898|ENST00000361183|CAPZA2;ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.78778076171875	2	479.800217	957.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.507	1	40.6	40.1	41.1	0.09267								0	0	0	0.20303	1	8646	8646		21.537	6.6987	1				49883	8154	28504	28505	60954	60954					0.10539217482710228
TTQVVGILK	9	Unmodified	_TTQVVGILK_					0	0	0		ENSG00000198898|ENST00000361183|CAPZA2;ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7877197265625	2	479.800217	957.585882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.7	1	40.793	40.293	41.293	0.09267								0	0	0	0.21673	1	8705	8705		17.113	2.2746	1				49884	8154	28504	28505	60955	60955					0.10539217482710228
TTQVVGILK	9	Unmodified	_TTQVVGILK_					0	0	0		ENSG00000198898|ENST00000361183|CAPZA2;ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7877197265625	2	479.800217	957.585882	0.30629	0.00014696	-1.8414	-0.0008835	-1.5351	-0.00073654	479.7992184244446	40.522	0.3787	40.621	40.505	40.884	0.099407					19	13	2	0	0	0	0.24467	1	8631	8631		17.113	2.2746	1	199570			49885	8154	28504	28505	60956	60956					0.10539217482710228
TTREVELPL	9	Unmodified	_TTREVELPL_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3126831054688	2	529.298039	1056.58152	0.50793	0.00026884	0.10686	5.6559E-05	0.61478	0.0003254	529.2982103760947	96.85	1.8671	96.845	96.169	98.036	-0.0055466					254	191	2	0	0	0	0.25779	1	25851	25851		3.2813	0	1	494340			49886	1420	28505	28506	60957	60957					0.055497082691545074
TTRIKITE	8	Unmodified	_TTRIKITE_					0	0	0		ENST00000602358.5_1_10:22614634-22615561:+|nuORF;ENST00000456675.2_1_10:22615378-22616584:+|nuORF;ENST00000602523.1_1_10:22610509-22615561:+|nuORF;ENSG00000168283|ENST00000376663|BMI1;ENSG00000277258|ENST00000620225|PCGF2	ENST00000602358.5_1_10:22614634-22615561:+|nuORF	ENST00000602358.5_1_10:22614634-22615561:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7716064453125	2	481.287474	960.560395	-0.1186	-5.7079E-05	-0.99407	-0.00047844	-1.1127	-0.00053551	481.2871104185654	13.511	0.23798	13.412	13.306	13.544	-0.099291					15	8	2	0	0	0	0.34353	1	472	472		4.756	0	1	49309			49887	6264	28506	28507	60958	60958					0.07853742960264753
TTRKNVYN	8	Unmodified	_TTRKNVYN_					0	0	0			REV__CTSB|p.N38T|1|0.17|ENSG00000164733|chr8:11853342-11853342|T/G|missense_variant	REV__CTSB|p.N38T|1|0.17|ENSG00000164733|chr8:11853342-11853342|T/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2662048339844	2	498.267073	994.519593	0.18397	9.1668E-05	-0.23113	-0.00011516	-0.047153	-2.3495E-05	498.26683518516546	17.527	0.6945	17.41	16.937	17.631	-0.11739					44	24	2	0	0	0	0.45942	1	1591	1591		2.5775	0	1	177720	+		49888	13289	28507	28508	60959	60959					0.022114016406590054
TTRLPVTDIS	10	Unmodified	_TTRLPVTDIS_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2411499023438	2	551.808771	1101.60299	0.3832	0.00021145	2.9454	0.0016253	3.3286	0.0018367	551.8100096606204	23.385	1.0444	23.341	23.084	24.129	-0.044867					39	36	2	0	0	0	0.32033	1	3488	3488		3.5965	0.31518	1	55009			49889	4632	28508	28509	60960	60960					0.05625093297862804
TTRSHTSLI	9	Unmodified	_TTRSHTSLI_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7797546386719	2	508.28018	1014.54581	0.10499	5.3365E-05	1.1518	0.00058542	1.2567	0.00063878	508.28245892449485	30.758	1.0961	30.785	30.309	31.405	0.027157					104	39	4	0	0	0	0.19747	1	5689	5689		24.021	3.606	1	556720	+		49890	18266	28509	28510	60961	60961					0.03911670812158263
TTRVPTPRP	9	Unmodified	_TTRVPTPRP_					0	0	0		ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2312622070312	2	512.79854	1023.58253	-0.0030668	-1.5727E-06	-0.36477	-0.00018706	-0.36784	-0.00018863	512.7981492850361	13.857	0.2486	13.857	13.714	13.962	0					15	8	2	0	0	0	0.26168	1	575	575		1.8442	0	1	43987			49891	4722	28510	28511	60962	60962					0.0716796742869974
TTRVPTPRP	9	Unmodified	_TTRVPTPRP_					0	0	0		ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	512.79854	1023.58253	-0.1203	-6.1691E-05	-0.1229	-6.3023E-05	-0.2432	-0.00012471	512.7983816843264	13.918	0.27507	13.813	13.658	13.933	-0.10466	-0.027834	0.00031174	NaN	1.8442	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34196			49892	4722	28510	28511							0.0716796742869974
TTRVPTPRP	9	Unmodified	_TTRVPTPRP_					0	0	0		ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	ENSG00000146700|ENST00000275560|SSC4D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	512.79854	1023.58253	-0.13589	-6.9682E-05	-0.89069	-0.00045674	-1.0266	-0.00052643	512.7982344057409	13.918	0.23307	13.852	13.716	13.949	-0.066067	0.011151	-0.0004757	NaN	1.8442	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23962			49893	4722	28510	28511							0.0716796742869974
TTSDSILLK	9	Unmodified	_TTSDSILLK_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP;ENST00000475896.5_1_3:100583650-100712249:-|nuORF	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2687683105469	2	489.279315	976.544076	0.67687	0.00033118	-1.3317	-0.0006516	-0.65488	-0.00032042	489.2785677684304	36.21	0.96876	36.296	36.085	37.053	0.08625					52	34	2	0	0	0	0.15943	1	7329	7329		32.786	4.2988	1	365810			49894	5110	28511	28512	60963	60963					0.0548661700354387
TTSDVPANYK	10	Unmodified	_TTSDVPANYK_					0	0	0		ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8035888671875	2	548.269478	1094.5244	0.58175	0.00031895	-0.11688	-6.4079E-05	0.46487	0.00025487	548.2693170455549	23.778	0.40308	23.74	23.562	23.965	-0.038927					30	13	3	0	0	0	0.30555	1	3551	3551		20.415	5.1661	1	99225			49895	816	28512	28513	60964	60964					-0.019077590072583916
TTSDVPANYK	10	Unmodified	_TTSDVPANYK_					0	0	0		ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	548.269478	1094.5244	0.26178	0.00014353	0.22611	0.00012397	0.48789	0.0002675	548.2694723277151	23.641	0.46861	23.641	23.448	23.917	0	-0.046844	0.00016285	NaN	20.415	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100930			49896	816	28512	28513							-0.019077590072583916
TTSDVPANYK	10	Unmodified	_TTSDVPANYK_					0	0	0		ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.269478	1094.5244	0.42943	0.00023544	0.044416	2.4352E-05	0.47385	0.0002598	548.2693837432199	23.755	0.46068	23.682	23.474	23.935	-0.072559	-0.0053425	-3.6383E-05	NaN	20.415	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104600			49897	816	28512	28513							-0.019077590072583916
TTSGPPIYF	9	Unmodified	_TTSGPPIYF_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.26727294921875	2	491.74765	981.480748	0.30496	0.00014997	-0.049017	-2.4104E-05	0.25595	0.00012586	491.7475214093408	21.731	0.58267	21.682	21.344	21.926	-0.049377					29	20	2	0	0	0	0.21905	1	2921	2921		16.942	6.1184	1	148240	+		49898	18808	28513	28514	60965	60965					-0.010733237137174001
TTSGPVLGSL	10	Unmodified	_TTSGPVLGSL_					0	0	0			REV__ENST00000584883.1_1_18:24179506-24179722:+|nuORF	REV__ENST00000584883.1_1_18:24179506-24179722:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2582702636719	2	466.258382	930.502212	-0.094817	-4.4209E-05	-0.27196	-0.00012681	-0.36678	-0.00017101	466.2582295372151	25.554	1.4567	25.522	24.89	26.347	-0.031408					133	51	4	0	0	0	0.080806	1	4029	4029		52.268	2.3353	1	2369700	+		49899	13228	28514	28515	60966	60966					0.034180613149942474
TTSIPLRL	8	Unmodified	_TTSIPLRL_					0	0	0		ENSG00000161036|ENST00000292616|LRWD1;ENST00000473880.5_1_7:102109277-102110330:+|nuORF	ENSG00000161036|ENST00000292616|LRWD1	ENSG00000161036|ENST00000292616|LRWD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7793884277344	2	450.779285	899.544017	0.18436	8.3108E-05	1.4154	0.00063802	1.5997	0.00072113	450.7798640168618	51.784	0.7311	51.784	51.565	52.296	0					58	26	3	0	0	0	0.20518	1	12154	12154		42.095	3.9434	1	491110			49900	5506	28515	28516	60967	60967					0.09022661794188025
TTSIPLRL	8	Unmodified	_TTSIPLRL_					0	0	0		ENSG00000161036|ENST00000292616|LRWD1;ENST00000473880.5_1_7:102109277-102110330:+|nuORF	ENSG00000161036|ENST00000292616|LRWD1	ENSG00000161036|ENST00000292616|LRWD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7793884277344	2	450.779285	899.544017	0.19479	8.7809E-05	1.4244	0.00064207	1.6192	0.00072988	450.77989764863065	51.703	0.74459	51.75	51.561	52.305	0.046574					54	26	3	0	0	0	0.10069	1	12099	12099		60.39	0	1	569380			49901	5506	28515	28516	60968	60968					0.09022661794188025
TTSIPLRL	8	Unmodified	_TTSIPLRL_					0	0	0		ENSG00000161036|ENST00000292616|LRWD1;ENST00000473880.5_1_7:102109277-102110330:+|nuORF	ENSG00000161036|ENST00000292616|LRWD1	ENSG00000161036|ENST00000292616|LRWD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.77960205078125	2	450.779285	899.544017	0.063964	2.8834E-05	1.5666	0.00070617	1.6305	0.000735	450.7800196947326	51.81	0.75605	51.809	51.576	52.332	-0.00080872					47	27	2	0	0	0	0.10069	1	12089	12089		60.39	0	1	628160			49902	5506	28515	28516	60969	60969					0.09022661794188025
TTSIPSTPK	9	Unmodified	_TTSIPSTPK_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.25811767578125	2	466.258382	930.502212	-0.12425	-5.7935E-05	-0.29664	-0.00013831	-0.42089	-0.00019625	466.25821612241566	25.519	1.2853	25.519	24.986	26.271	0					117	44	4	0	0	0	0.014888	3	4103	4016;4059;4103		71.922	6.6873	1	2079500			49903	5110	28516	28517	60970;60971;60972	60972					0.03418061315005616
TTSIPSTPK	9	Unmodified	_TTSIPSTPK_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.25823974609375	2	466.258382	930.502212	-0.24212	-0.00011289	-0.10927	-5.095E-05	-0.35139	-0.00016384	466.25830770640505	25.579	1.2716	25.523	24.946	26.218	-0.055931					108	44	4	0	0	0	0.0045319	1	4083	4083		90.135	11.407	1	2280200			49904	5110	28516	28517	60973	60973					0.03418061315005616
TTSIPSTPK	9	Unmodified	_TTSIPSTPK_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2581481933594	2	466.258382	930.502212	-0.094817	-4.4209E-05	-0.27196	-0.00012681	-0.36678	-0.00017101	466.2582295372151	25.554	1.4567	25.522	24.89	26.347	-0.031408					133	51	4	0	0	0	0.011693	2	4115	4072;4115		76.825	7.7593	1	2369700			49905	5110	28516	28517	60974;60975	60975					0.03418061315005616
TTSLPGVLGS	10	Unmodified	_TTSLPGVLGS_					0	0	0			REV__OR2A4|p.I213T|1|0.22|ENSG00000180658|chr6:131700764-131700764|A/G|missense_variant	REV__OR2A4|p.I213T|1|0.22|ENSG00000180658|chr6:131700764-131700764|A/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.25823974609375	2	466.258382	930.502212	-0.24212	-0.00011289	-0.10927	-5.095E-05	-0.35139	-0.00016384	466.25830770640505	25.579	1.2716	25.523	24.946	26.218	-0.055931					108	44	4	0	0	0	0.023345	1	4034	4034		68.081	5.508	1	2280200	+		49906	23280	28517	28518	60976	60976					0.034180613150283534
TTSMHSGS	8	Unmodified	_TTSMHSGS_					0	0	0			REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF	REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.1700439453125	2	404.16871	806.322867	-0.27936	-0.00011291	2.3508	0.0009501	2.0714	0.00083719	404.1701406933889	69.758	0.69392	69.824	69.548	70.242	0.06604					62	24	3	0	0	0	0.45942	1	17622	17622		2.5775	0	1	496350	+		49907	22422	28518	28519	60977	60977					-0.0880414624457444
TTSMHSGS	8	Unmodified	_TTSMHSGS_					0	0	0			REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF	REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	404.16871	806.322867	-0.20281	-8.197E-05	3.8677	0.0015632	3.6649	0.0014812	404.1700914945389	69.765	0.76237	69.765	69.511	70.273	0	-0.037234	0.00025486	NaN	2.5775	52	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469080	+		49908	22422	28518	28519							-0.0880414624457444
TTSMHSGS	8	Unmodified	_TTSMHSGS_					0	0	0			REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF	REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	404.16871	806.322867	-0.27936	-0.00011291	2.3508	0.0009501	2.0714	0.00083719	404.1701406933889	69.758	0.69392	69.824	69.548	70.242	0.06604	0.021185	-0.00097133	NaN	2.5775	62	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	496350	+		49909	22422	28518	28519							-0.0880414624457444
TTSMHSGS	8	Unmodified	_TTSMHSGS_					0	0	0			REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF	REV__ENST00000572844.1_1_17:7399627-7399921:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	404.16871	806.322867	-0.16813	-6.7953E-05	3.5148	0.0014206	3.3466	0.0013526	404.17005890651063	69.841	0.98459	69.818	69.539	70.524	-0.022087	0.016048	-3.0432E-05	NaN	2.5775	54	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	627930	+		49910	22422	28518	28519							-0.0880414624457444
TTSRVLKV	8	Unmodified	_TTSRVLKV_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2846984863281	2	452.284734	902.554916	0.27107	0.0001226	-0.26364	-0.00011924	0.0074292	3.3601E-06	452.28450775060963	20.666	1.3681	20.666	20.285	21.654	0					106	47	4	0	0	0	0.080297	4	2617	2570;2617;2661;2710		63.961	29.559	1	942360			49911	6239;6750	28519	28520	60978;60979;60980;60981	60979					0.09974064168477526
TTSRVLKV	8	Unmodified	_TTSRVLKV_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2846374511719	2	452.284734	902.554916	0.46604	0.00021078	-0.39982	-0.00018083	0.066224	2.9952E-05	452.2844393061131	20.834	1.1901	20.724	20.435	21.625	-0.11003					92	41	3	0	0	0	0.13814	3	2632	2632;2719;2801		53.833	11.993	1	1054200			49912	6239;6750	28519	28520	60982;60983;60984	60982					0.09974064168477526
TTSRVLKV	8	Unmodified	_TTSRVLKV_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.28466796875	2	452.284734	902.554916	0.40414	0.00018279	-0.41484	-0.00018763	-0.010701	-4.84E-06	452.2844295940957	20.748	1.2706	20.695	20.387	21.658	-0.05291					98	44	3	0	0	0	0.18459	3	2597	2597;2670;2717		45.7	12.362	1	991850			49913	6239;6750	28519	28520	60985;60986;60987	60985					0.09974064168477526
TTSSHHHLSPL	11	Unmodified	_TTSSHHHLSPL_					0	0	0		nc|ENSG00000174332|Q8NBF1|GLIS1;ENSG00000174332|ENST00000628545|GLIS1	nc|ENSG00000174332|Q8NBF1|GLIS1	nc|ENSG00000174332|Q8NBF1|GLIS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.908203125	3	406.207155	1215.59963	-0.069581	-2.8264E-05	-1.9869	-0.00080708	-2.0564	-0.00083534	406.2065010370621	30.524	0.83571	30.524	30.309	31.144	0					42	29	2	0	0	0	0.32951	1	5626	5626		4.4062	0	1	89991			49914	6788	28520	28521	60988	60988					0.0004584324385632499
TTSVITIVK	9	Unmodified	_TTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.3008728027344	2	481.30005	960.585547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.479	1	41.479	40.979	41.979	0								0	0	0	0.026891	1	8942	8942		67.838	29.663	1				49915	8084	28521	28522	60989	60989					0.1036779776285357
TTSVITIVK	9	Unmodified	_TTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.301025390625	2	481.30005	960.585547	0.34418	0.00016565	1.5617	0.00075166	1.9059	0.00091731	481.3009252542925	41.361	0.29746	41.458	41.259	41.557	0.096626					18	10	2	0	0	0	0.038291	1	8897	8897		57.249	22.317	1	1241200			49916	8084	28521	28522	60990	60990					0.1036779776285357
TTSVITIVK	9	Unmodified	_TTSVITIVK_					0	0	0		ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	ENSG00000198517|ENST00000343242|MAFK	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	481.30005	960.585547	0.12503	6.0177E-05	1.8096	0.00087096	1.9346	0.00093114	481.30088354573417	41.445	0.28847	41.535	41.299	41.587	0.090248	0.038929	7.8269E-05	NaN	57.249	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1230000			49917	8084	28521	28522							0.1036779776285357
TTTGHLIYK	9	Unmodified	_TTTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2877197265625	2	517.287474	1032.5604	0.21851	0.00011303	-0.29047	-0.00015025	-0.071959	-3.7223E-05	517.287359827487	22.349	1.1559	22.349	22.017	23.173	0					134	39	5	0	0	0	0.00014042	3	3154	3108;3154;3199		134.3	92.456	1	3920500			49918	5239	28522	28523	60991;60992;60993	60992					0.04541742960304873
TTTGHLIYK	9	Unmodified	_TTTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.287353515625	2	517.287474	1032.5604	0.15925	8.2378E-05	-0.27363	-0.00014155	-0.11438	-5.9168E-05	517.2873673295068	22.438	1.1847	22.351	22.057	23.242	-0.087608					145	42	5	0	0	0	0.00014042	3	3145	3145;3186;3228		134.3	92.456	1	3537000			49919	5239	28522	28523	60994;60995;60996	60994					0.04541742960304873
TTTGHLIYK	9	Unmodified	_TTTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2876586914062	2	517.287474	1032.5604	0.066481	3.439E-05	-0.17144	-8.8686E-05	-0.10496	-5.4297E-05	517.2874342547117	22.462	1.7498	22.417	22.009	23.759	-0.044867					170	61	5	0	0	0	0.0010463	3	3181	3133;3181;3227		122.18	84.205	1	3734000			49920	5239	28522	28523	60997;60998;60999	60998					0.04541742960304873
TTTGVDPVAK	10	Unmodified	_TTTGVDPVAK_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7691955566406	2	494.769114	987.523675	0.17713	8.764E-05	-0.48073	-0.00023785	-0.3036	-0.00015021	494.76870099651865	23.071	0.85381	23.071	22.763	23.616	0					63	29	4	0	0	0	0.13784	2	3320	3320;3368		40.239	16.219	1	369910			49921	977;10095	28523	28524	61000;61001	61000					0.02941446343709231
TTTGVDPVAK	10	Unmodified	_TTTGVDPVAK_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7691650390625	2	494.769114	987.523675	0.21973	0.00010871	-0.60028	-0.000297	-0.38055	-0.00018829	494.7685353451248	23.165	0.83722	23.078	22.82	23.657	-0.087608					61	29	4	0	0	0	0.038178	2	3356	3356;3400		61.602	30.334	1	359880			49922	977;10095	28523	28524	61002;61003	61002					0.02941446343709231
TTTGVDPVAK	10	Unmodified	_TTTGVDPVAK_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7691955566406	2	494.769114	987.523675	0.30122	0.00014904	-0.15486	-7.6619E-05	0.14636	7.2416E-05	494.76899400576195	23.147	0.62647	23.102	22.817	23.444	-0.044867					55	22	3	0	0	0	0.19345	2	3337	3337;3387		33.445	14.181	1	380660			49923	977;10095	28523	28524	61004;61005	61004					0.02941446343709231
TTTTTHITK	9	Unmodified	_TTTTTHITK_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;ENST00000452150.6_1_6:131179278-131188835:-|nuORF;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3	nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.27471923828125	2	502.274564	1002.53457	0.0052731	2.6485E-06	0.20849	0.00010472	0.21376	0.00010737	502.27452883064444	13.133	0.33388	13.133	13.031	13.365	0					34	11	4	0	0	0	0.17263	1	337	337		38.615	8.7742	1	262930			49924	1142;1200	28524	28525	61006	61006					0.03340848718005418
TTTTTHITK	9	Unmodified	_TTTTTHITK_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;ENST00000452150.6_1_6:131179278-131188835:-|nuORF;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3	nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2746276855469	2	502.274564	1002.53457	-0.0060954	-3.0616E-06	0.24618	0.00012365	0.24008	0.00012059	502.27459219365204	13.213	0.53924	13.114	12.953	13.492	-0.099291					38	18	4	0	0	0	0.25346	1	351	351		10.8	4.0763	1	260200			49925	1142;1200	28524	28525	61007	61007					0.03340848718005418
TTTTTHITK	9	Unmodified	_TTTTTHITK_					0	0	0		nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2;ENST00000368126.2_1_6:131179278-131186801:-|nuORF;ENST00000452150.6_1_6:131179278-131188835:-|nuORF;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3	nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3	nc|ENSG00000079819|O43491-3|EPB41L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.27459716796875	2	502.274564	1002.53457	-0.068952	-3.4633E-05	-0.29404	-0.00014769	-0.363	-0.00018232	502.2745338858935	13.189	0.55581	13.121	12.993	13.549	-0.067496					37	19	3	0	0	0	0.064268	1	353	353		47.594	14.809	1	218100			49926	1142;1200	28524	28525	61008	61008					0.03340848718005418
TTTVPQETL	9	Unmodified	_TTTVPQETL_					0	0	0			REV__nc|ENSG00000159140|P18583-6|SON	REV__nc|ENSG00000159140|P18583-6|SON	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7769470214844	2	495.261122	988.507691	0.46716	0.00023137	-1.1094	-0.00054945	-0.64224	-0.00031808	495.2598693971395	38.375	0.43618	38.465	38.294	38.73	0.090885					28	15	3	0	0	0	0.21303	1	8044	8044		21.747	2.3076	1	125750	+		49927	16837	28525	28526	61009	61009					0.0129774010682695
TTTWMGTRAPA	11	Unmodified	_TTTWMGTRAPA_					0	0	0		ENST00000530791.5_1_11:65687869-65688903:+|nuORF	ENST00000530791.5_1_11:65687869-65688903:+|nuORF	ENST00000530791.5_1_11:65687869-65688903:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.299560546875	2	596.792598	1191.57064	0.44932	0.00026815	0.59749	0.00035658	1.0468	0.00062472	596.7926446102947	58.987	0.82138	58.987	58.739	59.56	0					63	28	4	0	0	0	0.3239	1	14465	14465		17.113	4.5813	1	1083800			49928	11620	28526	28527	61010	61010					-0.017480173767808083
TTVDIFHKK	9	Unmodified	_TTVDIFHKK_					0	0	0		ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.8096923828125	2	544.808574	1087.60259	0.39052	0.00021276	0.78377	0.00042701	1.1743	0.00063976	544.8087604681314	24.259	0.58028	24.259	24.058	24.639	0					41	19	3	0	0	0	0.19083	1	3732	3732		24.991	21.047	1	136510			49929	5354	28527	28528	61011	61011					0.06229718368649628
TTVDIFHKK	9	Unmodified	_TTVDIFHKK_					0	0	0		ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.80908203125	2	544.808574	1087.60259	0.4815	0.00026233	0.69917	0.00038091	1.1807	0.00064324	544.8088350154629	24.418	0.59225	24.379	24.081	24.674	-0.038927					31	20	2	0	0	0	0.1558	1	3756	3756		41.956	23.809	1	164250			49930	5354	28527	28528	61012	61012					0.06229718368649628
TTVDIFHKK	9	Unmodified	_TTVDIFHKK_					0	0	0		ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.808574	1087.60259	0.6098	0.00033222	1.0831	0.00059008	1.6929	0.0009223	544.8089322516048	24.438	0.64705	24.366	23.997	24.645	-0.072559	0.031149	0.00026158	NaN	41.956	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147060			49931	5354	28527	28528							0.06229718368649628
TTVDTKITH	9	Unmodified	_TTVDTKITH_					0	0	0		ENSG00000123908|ENST00000220592|AGO2	ENSG00000123908|ENST00000220592|AGO2	ENSG00000123908|ENST00000220592|AGO2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.2821960449219	2	508.274564	1014.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.589	1	30.589	30.089	31.089	0								0	0	0	0.19013	1	5616	5616		25.399	2.663	1				49932	3125	28528	28529	61013	61013					0.027888487179893673
TTVELANK	8	Unmodified	_TTVELANK_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.25689697265625	2	438.245275	874.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.967	1	32.967	32.467	33.467	0								0	0	0	0.36169	1	6342	6342		9.3474	0	1				49933	2654	28529	28530	61014	61014					0.033737921435204044
TTVGVDGSLYK	11	Unmodified	_TTVGVDGSLYK_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3007202148438	2	570.300778	1138.587	-0.11276	-6.4308E-05	0.78098	0.00044539	0.66822	0.00038109	570.3008827863139	39.263	0.57186	39.263	39.073	39.644	0					36	20	2	0	0	0	0.27043	2	8303	8303;8309		24.882	13.387	1	221000			49934	5241	28530	28531	61015;61016	61015					0.023253870609551086
TTVGVDGSLYK	11	Unmodified	_TTVGVDGSLYK_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7845458984375	2	570.300778	1138.587	0.17809	0.00010157	0.097426	5.5562E-05	0.27552	0.00015713	570.3006238583569	39.144	0.44553	39.237	39.052	39.497	0.09267					29	15	3	0	0	0	0.012242	1	8254	8254		64.927	38.659	1	352820			49935	5241	28530	28531	61017	61017					0.023253870609551086
TTVGVDGSLYK	11	Unmodified	_TTVGVDGSLYK_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000494253.1_1_10:71098016-71144300:+|nuORF	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.2997436523438	2	570.300778	1138.587	0.35186	0.00020067	-0.52494	-0.00029937	-0.17308	-9.8705E-05	570.30022991762	39.089	0.46458	39.189	39.046	39.511	0.099407					27	16	2	0	0	0	0.062849	2	8230	8230;8261		49.527	24.128	1	360640			49936	5241	28530	28531	61018;61019	61018					0.023253870609551086
TTVITLPHVI	10	Unmodified	_TTVITLPHVI_					0	0	0		ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENST00000506426.1_1_4:184626141-184627956:+|nuORF	ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.332275390625	2	547.334424	1092.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.317	1	89.317	88.817	89.817	0								0	0	0	0.37581	1	23630	23630		3.9444	0	1				49937	6282	28531	28532	61020	61020					0.11167462062553568
TTVKEVAEM	9	Unmodified	_TTVKEVAEM_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2573547363281	2	504.257525	1006.5005	0.20846	0.00010512	-0.25547	-0.00012882	-0.04701	-2.3705E-05	504.25753778303266	26.478	0.98274	26.439	26.069	27.052	-0.038671					59	34	3	0	0	0	0.25714	1	4419	4419		15.248	2.206	1	323580			49938	8656	28532	28533	61021	61021					-0.0024931576525659693
TTVKGVIK	8	Unmodified	_TTVKGVIK_					0	0	0		nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;ENST00000481260.1_1_9:134504569-134518759:-|nuORF	nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.7423095703125	2	423.276378	844.538203	-0.075089	-3.1783E-05	-3.2383	-0.0013707	-3.3134	-0.0014025	423.2749688945797	75.702	0.29938	75.754	75.508	75.807	0.052368					12	10	2	0	0	0	0.34434	1	19431	19431		0.79363	0	1	55164			49939	2119	28533	28534	61022	61022					0.10971563282510033
TTVKGVIK	8	Unmodified	_TTVKGVIK_					0	0	0		nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;ENST00000481260.1_1_9:134504569-134518759:-|nuORF	nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	423.276378	844.538203	0.048536	2.0544E-05	-2.9935	-0.0012671	-2.945	-0.0012466	423.2750185538395	75.755	0.215	75.723	75.588	75.803	-0.031487	-0.015386	2.6789E-05	NaN	0.79363	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62743			49940	2119	28533	28534							0.10971563282510033
TTVLISPIS	9	Unmodified	_TTVLISPIS_					0	0	0		nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.V4399Sfs*3|1|0.23|ENSG00000169876|chr7:101053074-101053074|G/-|frameshift_variant;ENSG00000169876|ENST00000306151|MUC17	nc|ENSG00000169876|Q685J3-2|MUC17	nc|ENSG00000169876|Q685J3-2|MUC17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2582702636719	2	465.778951	929.543348	-0.22547	-0.00010502	1.6411	0.00076441	1.4157	0.00065939	465.77954860342976	25.187	0.33469	25.156	25.072	25.406	-0.03141					15	11	2	0	0	0	0.21905	1	4029	4029		23.148	0	1	34281			49941	6394	28534	28535	61023	61023					0.07575822354476713
TTVPEFFLR	9	Unmodified	_TTVPEFFLR_					0	0	0			REV__nc|ENSG00000154359|Q17RB8-2|LONRF1	REV__nc|ENSG00000154359|Q17RB8-2|LONRF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2577514648438	2	555.303124	1108.5917	0.38241	0.00021235	4.3602	0.0024212	4.7426	0.0026336	555.8079723106317	45.093	0.11126	45.168	45.072	45.183	0.075047					5	3	2	0	0	0	0.1939	1	10030	10030		30.637	3.7529	1	88698	+		49942	16664	28535	28536	61024	61024					0.04174315994373501
TTVPHVFSK	9	Unmodified	_TTVPHVFSK_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.281982421875	2	508.282192	1014.54983	0.28395	0.00014433	-2.8321	-0.0014395	-2.5482	-0.0012952	508.2823077350554	30.823	1.3589	30.823	30.194	31.553	0					112	48	3	0	0	0	0.053988	1	5664	5664		51.415	22.928	1	526740			49943	1445	28536	28537	61025	61025					0.04313760305853975
TTVPHVFSK	9	Unmodified	_TTVPHVFSK_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2822570800781	2	508.282192	1014.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.667	1	30.695	30.195	31.195	0.027946								0	0	0	0.034764	1	5640	5640		65.474	27.5	1				49944	1445	28536	28537	61026	61026					0.04313760305853975
TTVPHVFSK	9	Unmodified	_TTVPHVFSK_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2824401855469	2	508.282192	1014.54983	0.10499	5.3365E-05	-2.8054	-0.001426	-2.7005	-0.0013726	508.28245892449485	30.758	1.0961	30.785	30.309	31.405	0.027157					104	39	4	0	0	0	0.064268	1	5663	5663		47.594	19.108	1	556720			49945	1445	28536	28537	61027	61027					0.04313760305853975
TTVRKLQSYL	10	Unmodified	_TTVRKLQSYL_					0	0	0		ENST00000488705.1_1_9:20346443-20382387:-|nuORF;nc|ENSG00000171843|P42568-2|MLLT3;ENSG00000171843|ENST00000380338|MLLT3	ENST00000488705.1_1_9:20346443-20382387:-|nuORF	ENST00000488705.1_1_9:20346443-20382387:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.89520263671875	3	403.571434	1207.69247	-0.31622	-0.00012762	-0.20309	-8.1963E-05	-0.51932	-0.00020958	403.57133514889574	23.467	0.41002	23.379	23.138	23.548	-0.08761					33	14	3	0	0	0	0.3994	1	3454	3454		3.5871	0.85186	1	82679			49946	6584	28537	28538	61028	61028					0.09693347977236044
TTVTVRVK	8	Unmodified	_TTVTVRVK_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2841491699219	2	452.284734	902.554916	0.40414	0.00018279	-0.41484	-0.00018763	-0.010701	-4.84E-06	452.2844295940957	20.748	1.2706	20.695	20.387	21.658	-0.05291					98	44	3	0	0	0	0.44569	1	2766	2766		7.2892	0	1	991850			49947	4508	28538	28539	61029	61029					0.09974064168466157
TTVVAQLK	8	Unmodified	_TTVVAQLK_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8882751464844	2	430.26601	858.517468	-0.0067663	-2.9113E-06	-0.3846	-0.00016548	-0.39137	-0.00016839	430.2658647664971	29.717	0.44778	29.729	29.5	29.948	0.012266					23	14	2	0	0	0	0.32886	1	5389	5389		6.7232	0	1	101530			49948	1887	28539	28540	61030	61030					0.08254972902841473
TTVVITRN	8	Unmodified	_TTVVITRN_					0	0	0			REV__nc|ENSG00000125675|P42263|GRIA3	REV__nc|ENSG00000125675|P42263|GRIA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.59881591796875	2	452.266542	902.51853	-0.17666	-7.9897E-05	-0.76933	-0.00034794	-0.94599	-0.00042784	452.266319166955	12.494	0.17949	12.494	12.433	12.612	0					8	5	2	0	0	0	0.34437	1	142	142		0.69038	0	1	9732.7	+		49949	15276	28540	28541	61031	61031					0.06337187271753919
TTVVTTKSA	9	Unmodified	_TTVVTTKSA_					0	0	0		CON__P05784	CON__P05784	CON__P05784	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.25872802734375	2	454.258382	906.502212	0.0040292	1.8303E-06	-0.14066	-6.3898E-05	-0.13663	-6.2067E-05	454.2581778503261	17.892	0.43835	17.832	17.618	18.056	-0.060429					26	15	2	0	0	0	0.31763	1	1780	1780		6.2058	0	1	53693		+	49950	213	28541	28542	61032	61032					0.04522061314992243
TTVVTTKSA	9	Unmodified	_TTVVTTKSA_					0	0	0		CON__P05784	CON__P05784	CON__P05784	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	454.258382	906.502212	0.075696	3.4385E-05	-0.028666	-1.3022E-05	0.047029	2.1364E-05	454.2582472589007	17.792	0.48222	17.792	17.568	18.051	0	-0.0063627	9.1717E-05	NaN	6.2058	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49960		+	49951	213	28541	28542							0.04522061314992243
TTWAWFPSV	9	Unmodified	_TTWAWFPSV_					0	0	0		ENST00000466102.1_1_7:98248987-98249296:+|nuORF	ENST00000466102.1_1_7:98248987-98249296:+|nuORF	ENST00000466102.1_1_7:98248987-98249296:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.809326171875	2	547.768917	1093.52328	0.63467	0.00034765	-2.894	-0.0015853	-2.2594	-0.0012376	548.2688135626291	34.133	0.16895	34.2	34.066	34.235	0.06636					9	5	2	0	0	0	0.25938	1	6667	6667		4.3292	0	1	95084			49952	10807	28542	28543	61033	61033					-0.019739285854939226
TTWISTLLL	9	Unmodified	_TTWISTLLL_					0	0	0			REV__ENSG00000133800|ENST00000256178|LYVE1	REV__ENSG00000133800|ENST00000256178|LYVE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3074340820312	2	524.307875	1046.6012	0.69102	0.00036231	-0.92379	-0.00048435	-0.23277	-0.00012204	524.3070568101958	84.775	1.0751	84.856	84.205	85.28	0.080879					98	42	3	0	0	0	0.12846	1	22203	22203		34.102	6.4736	1	344020	+		49953	15637	28543	28544	61034	61034					0.07976084279903262
TTWISTLLL	9	Unmodified	_TTWISTLLL_					0	0	0			REV__ENSG00000133800|ENST00000256178|LYVE1	REV__ENSG00000133800|ENST00000256178|LYVE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.3079833984375	2	524.307875	1046.6012	0.70284	0.0003685	-1.1074	-0.00058062	-0.40456	-0.00021211	524.3069215926464	84.825	1.029	84.812	84.138	85.167	-0.01284					87	42	3	0	0	0	0.12846	1	22236	22236		34.102	1.797	1	415130	+		49954	15637	28543	28544	61035	61035					0.07976084279903262
TTWISTLLL	9	Unmodified	_TTWISTLLL_					0	0	0			REV__ENSG00000133800|ENST00000256178|LYVE1	REV__ENSG00000133800|ENST00000256178|LYVE1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	524.307875	1046.6012	0.72711	0.00038123	-0.82008	-0.00042998	-0.092968	-4.8744E-05	524.3069592156684	84.812	1.4048	84.812	84.057	85.462	0	-0.014609	0.00014207	NaN	34.102	88	53	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389030	+		49955	15637	28543	28544							0.07976084279903262
TTWISTLLL	9	Unmodified	_TTWISTLLL_					0	0	0			REV__ENSG00000133800|ENST00000256178|LYVE1	REV__ENSG00000133800|ENST00000256178|LYVE1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	524.307875	1046.6012	0.69102	0.00036231	-0.92379	-0.00048435	-0.23277	-0.00012204	524.3070568101958	84.775	1.0751	84.856	84.205	85.28	0.080879	0.028991	3.3324E-05	NaN	34.102	98	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344020	+		49956	15637	28543	28544							0.07976084279903262
TTWISTLLL	9	Unmodified	_TTWISTLLL_					0	0	0			REV__ENSG00000133800|ENST00000256178|LYVE1	REV__ENSG00000133800|ENST00000256178|LYVE1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.307875	1046.6012	0.70284	0.0003685	-1.1074	-0.00058062	-0.40456	-0.00021211	524.3069215926464	84.825	1.029	84.812	84.138	85.167	-0.01284	-0.014383	-0.00015921	NaN	34.102	87	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415130	+		49957	15637	28543	28544							0.07976084279903262
TTYEMVEGDQA	11	Unmodified	_TTYEMVEGDQA_					0	0	0			REV__ENST00000495037.1_1_3:66430689-66454678:-|nuORF	REV__ENST00000495037.1_1_3:66430689-66454678:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.56292724609375	3	415.176421	1242.50743	-0.28391	-0.00011787	2.1999	0.00091334	1.916	0.00079547	415.17737186258586	15.489	0.3971	15.489	15.257	15.654	0					28	12	3	0	0	0	0.33318	1	1086	1086		0.45452	0	1	20885	+		49958	16260	28544	28545	61036	61036					-0.10412047675345093
TTYPNTYIF	9	Unmodified	_TTYPNTYIF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2708740234375	2	560.27149	1118.52843	0.21405	0.00011993	-0.39312	-0.00022025	-0.17907	-0.00010033	560.2710364736373	67.796	0.79356	67.779	67.357	68.151	-0.016296					54	27	3	0	0	0	0.18123	1	16999	16999		34.402	2.0962	1	579280			49959	1654	28545	28546	61037	61037					-0.02609669513526569
TTYSKKGKSQG	11	Unmodified	_TTYSKKGKSQG_					0	0	0			REV__ENST00000416382.6_1_10:11373873-11374074:+|nuORF	REV__ENST00000416382.6_1_10:11373873-11374074:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.3034057617188	2	592.817127	1183.6197	0.15284	9.0604E-05	0.79564	0.00047167	0.94847	0.00056227	592.8175802498255	40.942	0.40252	41.038	40.857	41.259	0.096626					19	14	2	0	0	0	0.329	1	8731	8731		9.3831	3.1773	1	248920	+		49960	20817	28546	28547	61038	61038					0.035235941837981954
TTYSKKGKSQG	11	Unmodified	_TTYSKKGKSQG_					0	0	0			REV__ENST00000416382.6_1_10:11373873-11374074:+|nuORF	REV__ENST00000416382.6_1_10:11373873-11374074:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	592.817127	1183.6197	0.2286	0.00013552	0.62276	0.00036918	0.85136	0.0005047	593.3187808949207	41.232	0.29493	41.232	41.01	41.305	0	0.10129	-0.00012774	NaN	9.3831	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160180	+		49961	20817	28546	28547							0.035235941837981954
TTYSKQSVN	9	Unmodified	_TTYSKQSVN_					0	0	0			REV__ENSG00000115616|ENST00000233969|SLC9A2	REV__ENSG00000115616|ENST00000233969|SLC9A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.741455078125	2	514.256371	1026.49819	0.32971	0.00016956	1.388	0.0007138	1.7177	0.00088336	514.2571195282334	67.787	0.46169	67.787	67.561	68.022	0					21	15	2	0	0	0	0.18803	1	17005	17005		25.399	2.2509	1	150300	+		49962	14888	28547	28548	61039	61039					-0.014000281787048152
TTYTFRVK	8	Unmodified	_TTYTFRVK_					0	0	0		nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;ENSG00000169851|ENST00000695919|PCDH7	nc|ENSG00000169851|O60245|PCDH7	nc|ENSG00000169851|O60245|PCDH7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.77978515625	2	508.282192	1014.54983	0.10499	5.3365E-05	-2.8054	-0.001426	-2.7005	-0.0013726	508.28245892449485	30.758	1.0961	30.785	30.309	31.405	0.027157					104	39	4	0	0	0	0.42371	1	5738	5738		14.838	3.3436	1	556720			49963	6391	28548	28549	61040	61040					0.04313760305853975
TTYYPSPLNK	10	Unmodified	_TTYYPSPLNK_					0	0	0		chr3:122912234-122912843|501|15.29|0.24|6.01|-|ENST00000195173|SEMA5B,SEMA5B;chr3:122913424-122913537|482|10.41|0.17|5.91|-|ENST00000648990|SEMA5B,SEMA5B;nc|ENSG00000082684|Q9P283-3|SEMA5B;ENSG00000082684|ENST00000357599|SEMA5B;nc|ENSG00000082684|Q9P283-4|SEMA5B	chr3:122912234-122912843|501|15.29|0.24|6.01|-|ENST00000195173|SEMA5B,SEMA5B	chr3:122912234-122912843|501|15.29|0.24|6.01|-|ENST00000195173|SEMA5B,SEMA5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.3035888671875	2	592.303321	1182.59209	0.49371	0.00029243	0.38385	0.00022735	0.87756	0.00051978	592.3034381770348	40.887	0.60815	40.98	40.637	41.246	0.09267					48	22	3	0	0	0	0.067258	1	8772	8772		55.235	31.445	1	428670			49964	158	28549	28550	61041	61041					0.008096909235746352
TTYYPSPLNK	10	Unmodified	_TTYYPSPLNK_					0	0	0		chr3:122912234-122912843|501|15.29|0.24|6.01|-|ENST00000195173|SEMA5B,SEMA5B;chr3:122913424-122913537|482|10.41|0.17|5.91|-|ENST00000648990|SEMA5B,SEMA5B;nc|ENSG00000082684|Q9P283-3|SEMA5B;ENSG00000082684|ENST00000357599|SEMA5B;nc|ENSG00000082684|Q9P283-4|SEMA5B	chr3:122912234-122912843|501|15.29|0.24|6.01|-|ENST00000195173|SEMA5B,SEMA5B	chr3:122912234-122912843|501|15.29|0.24|6.01|-|ENST00000195173|SEMA5B,SEMA5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.3034057617188	2	592.303321	1182.59209	0.25182	0.00014915	0.21856	0.00012945	0.47038	0.00027861	592.303349847291	40.773	0.56039	40.873	40.563	41.123	0.099407					44	20	3	0	0	0	0.12729	1	8731	8731		69.338	52.225	1	551130			49965	158	28549	28550	61042	61042					0.008096909235746352
TTYYPSPLNK	10	Unmodified	_TTYYPSPLNK_					0	0	0		chr3:122912234-122912843|501|15.29|0.24|6.01|-|ENST00000195173|SEMA5B,SEMA5B;chr3:122913424-122913537|482|10.41|0.17|5.91|-|ENST00000648990|SEMA5B,SEMA5B;nc|ENSG00000082684|Q9P283-3|SEMA5B;ENSG00000082684|ENST00000357599|SEMA5B;nc|ENSG00000082684|Q9P283-4|SEMA5B	chr3:122912234-122912843|501|15.29|0.24|6.01|-|ENST00000195173|SEMA5B,SEMA5B	chr3:122912234-122912843|501|15.29|0.24|6.01|-|ENST00000195173|SEMA5B,SEMA5B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	592.303321	1182.59209	0.22137	0.00013112	0.48231	0.00028567	0.70368	0.00041679	592.3033383660389	41.084	0.61501	41.084	40.74	41.355	0	0.1053	0.00014616	NaN	55.235	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	503680			49966	158	28549	28550							0.008096909235746352
TVAAPNSAL	9	Unmodified	_TVAAPNSAL_					0	0	0		ENSG00000134830|ENST00000595464|C5AR2	ENSG00000134830|ENST00000595464|C5AR2	ENSG00000134830|ENST00000595464|C5AR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.57489013671875	2	422.232168	842.449782	-0.049572	-2.0931E-05	-1.2147	-0.0005129	-1.2643	-0.00053383	422.2314318158646	19.3	0.85699	19.245	18.989	19.846	-0.055691					42	29	2	0	0	0	0.25066	1	2184	2184		11.64	1.4569	1	65169			49967	3818	28550	28551	61043	61043					0.022255229720371972
TVADSFLLWLR	11	Unmodified	_TVADSFLLWLR_					0	0	0			REV__nc|ENSG00000204634|O95759-2|TBC1D8	REV__nc|ENSG00000204634|O95759-2|TBC1D8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.8863525390625	3	440.915201	1319.72377	-0.20856	-9.1956E-05	-1.3745	-0.00060604	-1.5831	-0.000698	440.91457839666526	13.83	0.47979	13.764	13.469	13.949	-0.066068					21	16	2	0	0	0	0.3322	1	534	534		4.7159	2.0847	1	47733	+		49968	18957	28551	28552	61044	61044					0.07669921011324732
TVAHPIVTV	9	Unmodified	_TVAHPIVTV_					0	0	0			REV__nc|ENSG00000076344|O94810-3|RGS11	REV__nc|ENSG00000076344|O94810-3|RGS11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7611999511719	2	468.779285	935.544017	0.24248	0.00011367	0.0028273	1.3254E-06	0.24531	0.000115	468.7792657259863	44.593	0.54858	44.661	44.513	45.062	0.068569					23	19	2	0	0	0	0.2451	1	9976	9976		15.847	0	1	244860	+		49969	13827	28552	28553	61045	61045					0.07366661794196716
TVAHPIVTV	9	Unmodified	_TVAHPIVTV_					0	0	0			REV__nc|ENSG00000076344|O94810-3|RGS11	REV__nc|ENSG00000076344|O94810-3|RGS11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	468.779285	935.544017	0.28838	0.00013519	0.55871	0.00026191	0.84709	0.0003971	468.77958703085494	44.625	0.49942	44.625	44.462	44.961	0	-0.017994	0.0004125	NaN	15.847	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210890	+		49970	13827	28552	28553							0.07366661794196716
TVAKKFQR	8	Unmodified	_TVAKKFQR_					0	0	0			REV__ENST00000449943.5_1_11:64897669-64899838:-|nuORF	REV__ENST00000449943.5_1_11:64897669-64899838:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.77130126953125	2	489.298176	976.581799	0.24353	0.00011916	0.09945	4.8661E-05	0.34298	0.00016782	489.29829849604425	19.488	0.49914	19.433	19.017	19.516	-0.055693					30	16	3	0	0	0	0.34437	1	2160	2160		0.69038	0.69038	1	36871	+		49971	16970	28553	28554	61046	61046					0.09257172779666689
TVAKSHLLF	9	Unmodified	_TVAKSHLLF_					0	0	0			REV__ENST00000560597.1_1_15:65748048-65748153:-|nuORF	REV__ENST00000560597.1_1_15:65748048-65748153:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.312744140625	2	508.300384	1014.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.194	1	87.194	86.694	87.694	0								0	0	0	0.22789	1	22981	22981		13.508	0	1		+		49972	20640	28554	28555	61047	61047					0.07950637202566213
TVALLWLLC	9	Unmodified	_TVALLWLLC_					0	0	0			REV__ENSG00000177363|ENST00000317449|LRRN4CL	REV__ENSG00000177363|ENST00000317449|LRRN4CL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2691040039062	2	516.301539	1030.58852	0.21091	0.0001089	-2.4939	-0.0012876	-2.283	-0.0011787	516.3004806121115	52.812	0.29559	52.812	52.717	53.013	-0.00080872					13	10	2	0	0	0	0.24739	1	12434	12434		13.508	0	1	109070	+		49973	17985	28555	28556	61048	61048					0.07445349616023123
TVALSALAPF	10	Unmodified	_TVALSALAPF_					0	0	0			REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF	REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2823791503906	2	495.286943	988.559333	0.42728	0.00021163	2.7263	0.0013503	3.1536	0.0015619	495.28668844865183	47.004	0.58873	47.056	46.79	47.379	0.052574					36	21	3	0	0	0	0.29978	1	10665	10665		20.454	0	1	549530	+		49974	17359	28556	28557	61049	61049					0.0645952859136969
TVALSALAPF	10	Unmodified	_TVALSALAPF_					0	0	0			REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF	REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	495.286943	988.559333	0.74408	0.00036853	-0.12848	-6.3635E-05	0.6156	0.0003049	495.28645714771994	47.023	0.28891	47.023	46.873	47.162	0	-0.0070142	-0.00021263	NaN	20.454	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	589990	+		49975	17359	28556	28557							0.0645952859136969
TVALSALAPF	10	Unmodified	_TVALSALAPF_					0	0	0			REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF	REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	495.286943	988.559333	0.42728	0.00021163	2.7263	0.0013503	3.1536	0.0015619	495.28668844865183	47.004	0.58873	47.056	46.79	47.379	0.052574	0.026685	0.0026152	NaN	20.454	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	549530	+		49976	17359	28556	28557							0.0645952859136969
TVALSALAPF	10	Unmodified	_TVALSALAPF_					0	0	0			REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF	REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	495.286943	988.559333	0.83638	0.00041425	-0.42591	-0.00021095	0.41047	0.0002033	495.28589559460255	46.956	0.37825	47.01	46.877	47.256	0.054371	-0.01967	-0.00050726	NaN	20.454	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403250	+		49977	17359	28556	28557							0.0645952859136969
TVAQITQRF	9	Unmodified	_TVAQITQRF_					0	0	0		ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F	ENST00000484704.5_1_6:29691969-29693843:+|nuORF	ENST00000484704.5_1_6:29691969-29693843:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.298583984375	2	532.298373	1062.58219	0.3199	0.00017028	0.8556	0.00045543	1.1755	0.00062572	532.2983465850921	42.536	0.74055	42.628	42.354	43.095	0.091362					49	26	2	0	0	0	0.0031966	1	9293	9293		100.71	51.154	1	502960			49978	8249	28557	28558	61050	61050					0.05340547708851773
TVARGRLM	8	Unmodified	_TVARGRLM_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2540283203125	2	452.263279	902.512005	-0.12655	-5.7233E-05	2.4893	0.0011258	2.3628	0.0010686	452.2642668073086	14.645	0.31371	14.645	14.505	14.819	0					17	10	2	0	0	0	0.45169	1	778	778		5.2307	0	1	67337	+		49979	23156	28558	28559	61051	61051					0.05684970839399739
TVASSFFTR	9	Unmodified	_TVASSFFTR_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.27685546875	2	508.263999	1014.51345	0.56091	0.00028509	3.0763	0.0015636	3.6372	0.0018487	508.26692098716416	47.728	0.44451	47.771	47.43	47.875	0.043324					35	16	3	0	0	0	0.11517	1	10833	10833		36.044	3.7387	1	731240	+		49980	19344	28559	28560	61052	61052					0.006768834091417375
TVASVVWVF	9	Unmodified	_TVASVVWVF_					0	0	0			REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2805480957031	2	504.28166	1006.54877	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.223	1	86.214	85.714	86.714	-0.0090027								0	0	0	0.23091	1	22667	22667		12.532	0.89125	1		+		49981	17648	28560	28561	61053	61053					0.04575545936961589
TVATFILQK	9	Unmodified	_TVATFILQK_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8075256347656	2	510.808042	1019.60153	0.33195	0.00016956	-0.46208	-0.00023603	-0.13013	-6.6471E-05	510.80762912760844	49.821	0.3234	49.821	49.6	49.923	0					23	11	3	0	0	0	0.037019	1	11524	11524		57.722	9.9733	1	427450			49982	4595	28561	28562	61054	61054					0.09251503999757915
TVATFILQK	9	Unmodified	_TVATFILQK_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.80804443359375	2	510.808042	1019.60153	0.27136	0.00013861	-0.57385	-0.00029313	-0.30249	-0.00015452	510.80759821355895	49.765	0.3652	49.81	49.566	49.932	0.044891					27	13	3	0	0	0	0.018449	1	11496	11496		66.457	10.28	1	500270			49983	4595	28561	28562	61055	61055					0.09251503999757915
TVATFILQK	9	Unmodified	_TVATFILQK_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.8078308105469	2	510.808042	1019.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.831	1	49.851	49.351	50.351	0.020691								0	0	0	0.039802	1	11501	11501		63.961	10.128	1				49984	4595	28561	28562	61056	61056					0.09251503999757915
TVATGVQLR	9	Unmodified	_TVATGVQLR_					0	0	0			REV__ENST00000570734.1_2_17:80696358-80706928:+|nuORF	REV__ENST00000570734.1_2_17:80696358-80706928:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.2682189941406	2	472.779816	943.545079	0.15253	7.2113E-05	0.16673	7.8825E-05	0.31926	0.00015094	472.77985017673353	19.625	0.83532	19.509	18.977	19.812	-0.11592					39	28	2	0	0	0	0.26031	1	2140	2140		3.5965	0.31518	1	65494	+		49985	22414	28562	28563	61057	61057					0.07104876163100471
TVATGVQLR	9	Unmodified	_TVATGVQLR_					0	0	0			REV__ENST00000570734.1_2_17:80696358-80706928:+|nuORF	REV__ENST00000570734.1_2_17:80696358-80706928:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	472.779816	943.545079	0.22436	0.00010607	0.1521	7.1912E-05	0.37646	0.00017798	472.7798232221845	19.577	0.59052	19.521	19.144	19.735	-0.055693	0.0060498	-8.6882E-06	NaN	3.5965	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57628	+		49986	22414	28562	28563							0.07104876163100471
TVAVDKFTV	9	Unmodified	_TVAVDKFTV_					0	0	0			REV__ENST00000595560.1_1_19:58067392-58071050:-|nuORF	REV__ENST00000595560.1_1_19:58067392-58071050:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7981872558594	2	490.276575	978.538597	0.47612	0.00023343	-0.42422	-0.00020799	0.051899	2.5445E-05	490.276208288426	44.328	0.50587	44.396	44.093	44.599	0.068569					32	18	3	0	0	0	0.22674	1	9864	9864		22.736	2.2827	1	376150	+		49987	19222	28563	28564	61058	61058					0.04846938211721863
TVAVPIRQ	8	Unmodified	_TVAVPIRQ_					0	0	0		ENST00000378470.5_2_10:14562876-14563080:-|nuORF	REV__ENST00000428076.1_1_13:19956755-19957193:+|nuORF	REV__ENST00000428076.1_1_13:19956755-19957193:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.2841796875	2	442.271627	882.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.025	1	43.025	42.525	43.525	0								0	0	0	0.32762	1	9416	9416		24.674	5.2349	1				49988	20916	28564	28565	61059	61059					0.08273794996989636
TVAVPIRQ	8	Unmodified	_TVAVPIRQ_					0	0	0		ENST00000378470.5_2_10:14562876-14563080:-|nuORF	REV__ENST00000428076.1_1_13:19956755-19957193:+|nuORF	REV__ENST00000428076.1_1_13:19956755-19957193:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.28424072265625	2	442.271627	882.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.17	1	43.17	42.67	43.67	0								0	0	0	0.32762	1	9460	9460		24.674	5.2349	1				49989	20916	28564	28565	61060	61060					0.08273794996989636
TVAVPIRQ	8	Unmodified	_TVAVPIRQ_					0	0	0		ENST00000378470.5_2_10:14562876-14563080:-|nuORF	REV__ENST00000428076.1_1_13:19956755-19957193:+|nuORF	REV__ENST00000428076.1_1_13:19956755-19957193:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.2841491699219	2	442.271627	882.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.917	1	43.002	42.502	43.502	0.085197								0	0	0	0.32762	1	9380	9380		24.674	1.5255	1				49990	20916	28564	28565	61061	61061					0.08273794996989636
TVAVPIRQ	8	Unmodified	_TVAVPIRQ_					0	0	0		ENST00000378470.5_2_10:14562876-14563080:-|nuORF	REV__ENST00000428076.1_1_13:19956755-19957193:+|nuORF	REV__ENST00000428076.1_1_13:19956755-19957193:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2840270996094	2	442.271627	882.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.813	1	42.905	42.405	43.405	0.091362								0	0	0	0.32762	1	9340	9340		24.674	1.5255	1				49991	20916	28564	28565	61062	61062					0.08273794996989636
TVAVPLVGK	9	Unmodified	_TVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.28399658203125	2	442.284203	882.553853	0.18015	7.9677E-05	-0.063401	-2.8041E-05	0.11675	5.1635E-05	442.28407173272393	43.084	1.4375	43.084	42.678	44.115	0					128	52	4	0	0	0	0.13898	1	9368	9368		43.858	18.459	1	4933400			49992	4020	28565	28566	61063	61063					0.10787849799567084
TVAVPLVGK	9	Unmodified	_TVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.28424072265625	2	442.284203	882.553853	0.21795	9.6397E-05	-0.057386	-2.5381E-05	0.16057	7.1017E-05	442.2840668703801	43.048	1.325	43.133	42.731	44.056	0.085197					128	48	4	0	0	0	0.079752	1	9437	9437		41.84	16.44	1	5050300			49993	4020	28565	28566	61064	61064					0.10787849799567084
TVAVPLVGK	9	Unmodified	_TVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2842102050781	2	442.284203	882.553853	0.072472	3.2053E-05	0.040942	1.8108E-05	0.11341	5.0161E-05	442.284113780612	42.972	1.3397	43.063	42.663	44.002	0.091362					134	49	4	0	0	0	0.041175	1	9388	9388		56.177	23.872	1	5372000			49994	4020	28565	28566	61065	61065					0.10787849799567084
TVAVPLVGKL	10	Unmodified	_TVAVPLVGKL_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.8264465332031	2	498.826235	995.637917	0.22552	0.0001125	0.18929	9.4422E-05	0.41481	0.00020692	498.8262397028315	61.245	1.8156	61.245	60.764	62.58	0					162	67	4	0	0	0	0.00094584	4	15034	14986;15034;15086;15136		121.53	81.584	1	5571200			49995	4020	28566	28567	61066;61067;61068;61069	61067					0.13992380896468148
TVAVPLVGKL	10	Unmodified	_TVAVPLVGKL_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.82635498046875	2	498.826235	995.637917	0.18475	9.2158E-05	0.18431	9.1939E-05	0.36906	0.0001841	498.8262569496032	61.166	1.8345	61.263	60.579	62.414	0.096985					156	66	4	0	0	0	0.00094584	4	15018	14924;14969;15018;15068		121.53	81.584	1	6358700			49996	4020	28566	28567	61070;61071;61072;61073	61072					0.13992380896468148
TVAVPLVGKL	10	Unmodified	_TVAVPLVGKL_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.8265380859375	2	498.826235	995.637917	0.20251	0.00010102	0.16988	8.4743E-05	0.3724	0.00018576	498.82626581442634	61.204	1.8679	61.195	60.572	62.44	-0.0094566					149	68	3	0	0	0	0.0014935	4	14989	14943;14989;15041;15091		114.2	77.767	1	6473000			49997	4020	28566	28567	61074;61075;61076;61077	61075					0.13992380896468148
TVAVVLLLIC	10	Unmodified	_TVAVVLLLIC_					0	0	0			REV__nc|ENSG00000225997|P0C604|OR4A8	REV__nc|ENSG00000225997|P0C604|OR4A8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2471313476562	2	522.330296	1042.64604	0.1451	7.5788E-05	-3.8144	-0.0019924	-3.6693	-0.0019166	522.3286221218173	65.22	0.29764	65.22	65.047	65.345	0					14	10	2	0	0	0	0.31165	1	16257	16257		10.824	2.2306	1	85652	+		49998	23199	28567	28568	61078	61078					0.12642191821623783
TVCQFITATEM	11	Unmodified	_TVCQFITATEM_					0	0	0		nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant;nc|ENSG00000157106|Q96Q15-4|SMG1	nc|ENSG00000157106|Q96Q15-3|SMG1	nc|ENSG00000157106|Q96Q15-3|SMG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5036926269531	3	415.194758	1242.56245	0.09472	3.9327E-05	-0.46856	-0.00019454	-0.37384	-0.00015522	415.1948509191804	44.336	0.92622	44.336	44.065	44.991	0					37	33	2	0	0	0	0.33025	1	9792	9792		9.2438	2.6134	1	245010			49999	5279	28568	28569	61079	61079					-0.04913332408432325
TVCVLERQ	8	Unmodified	_TVCVLERQ_					0	0	0		ENST00000476571.1_1_6:124443035-124712010:+|nuORF;nc|ENSG00000188580|Q5VXU1-3|NKAIN2	ENST00000476571.1_1_6:124443035-124712010:+|nuORF	ENST00000476571.1_1_6:124443035-124712010:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7822265625	2	474.252577	946.490601	0.055132	2.6146E-05	-3.1089	-0.0014744	-3.0537	-0.0014482	474.25126655157464	29.474	0.57428	29.488	29.14	29.714	0.013474					26	19	2	0	0	0	0.32886	1	5233	5233		21.747	2.4897	1	102440			50000	10947	28569	28570	61080	61080					0.015215410200198676
TVDDLRSWLW	10	Unmodified	_TVDDLRSWLW_					0	0	0			REV__ENST00000295324.3_1_2:37873900-37898677:-|nuORF	REV__ENST00000295324.3_1_2:37873900-37898677:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8880615234375	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.607	1	28.607	28.107	29.107	0								0	0	0	0.3808	1	5012	5012		0.77653	0.14971	1		+		50001	19778	28570	28571	61081	61081					0.0072018456346540916
TVDEGGRAPL	10	Unmodified	_TVDEGGRAPL_					0	0	0		ENSG00000138759|ENST00000512123|FRAS1;nc|ENSG00000138759|Q86XX4|FRAS1;nc|ENSG00000138759|Q86XX4-5|FRAS1	ENSG00000138759|ENST00000512123|FRAS1	ENSG00000138759|ENST00000512123|FRAS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3187255859375	2	507.764363	1013.51417	0.47858	0.000243	-0.57436	-0.00029164	-0.095787	-4.8637E-05	507.76380629438665	64.592	1.4192	64.592	63.771	65.19	0					106	51	3	0	0	0	0.255	1	15857	15857		34.402	2.0962	1	624040			50002	4188	28571	28572	61082	61082					0.00795678058204885
TVDEKNYTK	9	Unmodified	_TVDEKNYTK_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7780151367188	2	549.277303	1096.54005	0.087559	4.8094E-05	0.30015	0.00016487	0.38771	0.00021296	549.2780978794254	14.05	0.85346	14.05	13.822	14.676	0					78	29	4	0	0	0	0.0027197	1	616	616		104.48	44.41	1	2920800			50003	7299	28572	28573	61083	61083					-0.0043547249019866285
TVDEKNYTK	9	Unmodified	_TVDEKNYTK_					0	0	0		nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	nc|ENSG00000182551|Q9BV57-2|ADI1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.277303	1096.54005	0.11185	6.1439E-05	0.19218	0.00010556	0.30403	0.000167	549.2781752746064	14.141	0.83967	14.075	13.889	14.729	-0.066067	0.0065893	-5.0236E-05	NaN	104.48	96	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2863800			50004	7299	28572	28573							-0.0043547249019866285
TVDGRVVEPK	10	Unmodified	_TVDGRVVEPK_					0	0	0		ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENST00000441603.1_1_11:5593122-5593311:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3088989257812	2	550.308938	1098.60332	0.36596	0.00020139	-0.17868	-9.8327E-05	0.18728	0.00010306	550.3087316041809	24.843	0.63385	24.843	24.548	25.182	0					43	21	3	0	0	0	0.26354	1	3859	3859		24.882	0	1	208810			50005	10556	28573	28574	61084	61084					0.05796513017708094
TVDGRVVEPK	10	Unmodified	_TVDGRVVEPK_					0	0	0		ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENST00000441603.1_1_11:5593122-5593311:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3089599609375	2	550.308938	1098.60332	0.35542	0.00019559	-0.14764	-8.1246E-05	0.20779	0.00011435	550.3088046979494	24.89	0.50217	24.834	24.6	25.102	-0.055931					38	17	3	0	0	0	0.24437	1	3875	3875		27.223	0	1	215590			50006	10556	28573	28574	61085	61085					0.05796513017708094
TVDGRVVEPK	10	Unmodified	_TVDGRVVEPK_					0	0	0		ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENST00000441603.1_1_11:5593122-5593311:-|nuORF	ENST00000441603.1_1_11:5593122-5593311:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3088989257812	2	550.308938	1098.60332	0.11946	6.5742E-05	0.1973	0.00010858	0.31677	0.00017432	550.3089458983891	24.815	0.52723	24.784	24.571	25.098	-0.031408					40	17	3	0	0	0	0.36368	1	3851	3851		10.151	0	1	258010			50007	10556	28573	28574	61086	61086					0.05796513017708094
TVDMQKGRY	9	Unmodified	_TVDMQKGRY_					0	0	0		ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7877807617188	2	549.274041	1096.53353	0.14344	7.8786E-05	4.1241	0.0022653	4.2676	0.0023441	549.7774347424282	14.91	0.22534	14.845	14.73	14.955	-0.064414					18	7	3	0	0	0	0.25779	1	846	846		6.2058	0.47393	1	29722			50008	1085	28574	28575	61087	61087					-0.01087688922552843
TVDMVMKLSIF	11	Unmodified	_TVDMVMKLSIF_					0	0	0			REV__ENST00000303575.8_1_14:75601016-75601088:-|nuORF	REV__ENST00000303575.8_1_14:75601016-75601088:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.9295654296875	3	428.562782	1282.66652	-0.21352	-9.1506E-05	1.1883	0.00050928	0.97483	0.00041777	428.5632086259395	33.175	0.27807	33.175	32.955	33.233	0					12	9	2	0	0	0	0.32719	1	6356	6356		10.315	2.8382	1	134570	+		50009	19840	28575	28576	61088	61088					0.036489944190861934
TVDPKYHPK	9	Unmodified	_TVDPKYHPK_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7937622070312	2	542.792924	1083.57129	0.20201	0.00010965	1.438	0.00078056	1.64	0.00089021	542.7935712768016	14.165	0.40011	14.06	13.873	14.273	-0.10466					30	13	3	0	0	0	0.11201	1	659	659		36.506	13.77	1	220890			50010	2669	28576	28577	61089	61089					0.032851453345756454
TVDPKYHPK	9	Unmodified	_TVDPKYHPK_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.85205078125	2	542.792924	1083.57129	0.2317	0.00012577	0.96842	0.00052565	1.2001	0.00065142	542.7933802064964	14.135	0.43165	14.069	13.889	14.32	-0.066068					29	14	3	0	0	0	0.26031	1	605	605		3.5965	1.2938	1	145940			50011	2669	28576	28577	61090	61090					0.032851453345756454
TVDPKYHPK	9	Unmodified	_TVDPKYHPK_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	542.792924	1083.57129	0.15559	8.4454E-05	1.2252	0.00066503	1.3808	0.00074948	542.7935927569669	14.057	0.51784	14.057	13.847	14.365	0	-0.005027	3.5108E-05	NaN	36.506	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164660			50012	2669	28576	28577							0.032851453345756454
TVDQHLQF	8	Unmodified	_TVDQHLQF_					0	0	0		nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2;TET2|p.K722*|1|0.04|ENSG00000168769|chr4:105236104-105236105|-/T|frameshift_variant	nc|ENSG00000168769|Q6N021-2|TET2	nc|ENSG00000168769|Q6N021-2|TET2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.29510498046875	2	494.248349	986.482145	0.59068	0.00029194	-2.8958	-0.0014312	-2.3051	-0.0011393	494.24663128535025	29.429	0.24954	29.429	29.355	29.605	0					14	8	2	0	0	0	0.33245	1	5308	5308		19.439	4.8573	1	64003			50013	6298	28577	28578	61091	61091					-0.011636896249569872
TVEAQQNSI	9	Unmodified	_TVEAQQNSI_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP;REV__nc|ENSG00000178104|Q5VU43-13|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.24853515625	2	495.248546	988.482539	0.59516	0.00029475	-0.65363	-0.00032371	-0.05847	-2.8957E-05	495.24821374782124	20.743	0.5863	20.69	20.418	21.005	-0.052912					38	20	2	0	0	0	0.24848	1	2608	2608		13.906	0.86358	1	204400	+		50014	18016;23108	28578	28579	61092	61092					-0.012163146957504978
TVEEYLEPEVF	11	Unmodified	_TVEEYLEPEVF_					0	0	0			REV__ENSG00000070019|ENST00000261170|GUCY2C	REV__ENSG00000070019|ENST00000261170|GUCY2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.21868896484375	3	452.218614	1353.63401	0.32132	0.00014531	-0.10347	-4.679E-05	0.21785	9.8518E-05	452.21857076681346	40.346	0.742	40.445	40.118	40.86	0.099403					97	26	5	0	0	0	0.44966	2	8649	8559;8649		4.7159	4.7159	1	3364900	+		50015	13718	28579	28580	61093;61094	61094					-0.028657981785727316
TVEFKNVSF	9	Unmodified	_TVEFKNVSF_					0	0	0		ENSG00000004846|ENST00000404938|ABCB5;ABCB5|p.H1135Ifs*17|1|0.26|ENSG00000004846|chr7:20745411-20745411|C/-|frameshift_variant;ENST00000477094.5_1_7:20686955-20691273:+|nuORF	ENSG00000004846|ENST00000404938|ABCB5	ENSG00000004846|ENST00000404938|ABCB5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7796630859375	2	535.779482	1069.54441	0.16784	8.9928E-05	-0.77475	-0.0004151	-0.60691	-0.00032517	536.2802732391755	76.258	0.70103	76.312	76.189	76.89	0.053413					76	24	4	0	0	0	0.15219	1	19738	19738		30.637	0.41173	1	2849300			50016	1	28580	28581	61095	61095					0.0124203672337444
TVEFYQRL	8	Unmodified	_TVEFYQRL_					0	0	0		ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7279052734375	2	528.279649	1054.54475	0.73868	0.00039023	-2.704	-0.0014284	-1.9653	-0.0010382	528.2786869817619	52.932	0.30963	52.988	52.883	53.193	0.056259					15	10	2	0	0	0	0.3366	1	12464	12464		12.532	0	1	280010			50017	1315	28581	28582	61096	61096					0.0196545644323578
TVEMIKVAF	9	Unmodified	_TVEMIKVAF_					0	0	0			REV__ENST00000483578.1_1_16:30759640-30762664:+|nuORF	REV__ENST00000483578.1_1_16:30759640-30762664:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.7750854492188	2	519.288628	1036.5627	0.52486	0.00027256	-0.35879	-0.00018632	0.16607	8.624E-05	519.2883194071495	35.749	0.3261	35.749	35.635	35.962	0					16	11	2	0	0	0	0.25811	1	7225	7225		2.3027	0	1	157590	+		50018	16761	28582	28583	61097	61097					0.045884553737323586
TVEPRLLVA	9	Unmodified	_TVEPRLLVA_					0	0	0		nc|ENSG00000125744|O75298-2|RTN2	nc|ENSG00000125744|O75298-2|RTN2	nc|ENSG00000125744|O75298-2|RTN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2956237792969	2	499.305667	996.596781	0.3628	0.00018115	0.45492	0.00022714	0.81772	0.00040829	499.30622521441165	47.244	0.90524	47.297	46.872	47.777	0.052574					69	33	3	0	0	0	0.16283	1	10685	10685		29.082	1.4528	1	1265800			50019	12686	28583	28584	61098	61098					0.09834619856997051
TVESRVAEV	9	Unmodified	_TVESRVAEV_					0	0	0		ENSG00000186130|ENST00000373659|ZBTB6	ENSG00000186130|ENST00000373659|ZBTB6	ENSG00000186130|ENST00000373659|ZBTB6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2671203613281	2	495.266739	988.518924	-0.32873	-0.00016281	0.89045	0.00044101	0.56173	0.00027821	495.26737649060703	35.243	0.6591	35.318	34.874	35.533	0.075306					53	23	3	0	0	0	0.16283	1	6954	6954		29.082	0.58707	1	578100			50020	7593	28584	28585	61099	61099					0.024205622009503713
TVESTNLLLEK	11	Unmodified	_TVESTNLLLEK_					0	0	0			REV__ENST00000533453.5_1_6:117824949-117853459:+|nuORF	REV__ENST00000533453.5_1_6:117824949-117853459:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.22821044921875	3	416.234487	1245.68163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.79	1	103.8	103.3	104.3	0.0082703								0	0	0	0.36517	1	27578	27578		2.2527	0	1		+		50021	17160	28585	28586	61100	61100					0.06861900812282329
TVEYVTIRLR	10	Unmodified	_TVEYVTIRLR_					0	0	0			REV__ENST00000302937.8_1_19:54694186-54695312:+|nuORF	REV__ENST00000302937.8_1_19:54694186-54695312:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.2471008300781	3	417.24695	1248.71902	0.046868	1.9555E-05	0.83174	0.00034704	0.8786	0.00036659	417.24724523897055	28.531	0.53391	28.527	28.333	28.867	-0.0042572					43	18	3	0	0	0	0.38745	1	5015	5015		5.7834	1.0675	1	165030	+		50022	19834	28586	28587	61101	61101					0.10461036868559859
TVEYVTIRLR	10	Unmodified	_TVEYVTIRLR_					0	0	0			REV__ENST00000302937.8_1_19:54694186-54695312:+|nuORF	REV__ENST00000302937.8_1_19:54694186-54695312:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	417.24695	1248.71902	-0.1861	-7.7651E-05	1.3097	0.00054645	1.1235	0.0004688	417.24738651056964	28.588	0.51175	28.588	28.333	28.845	0	0.018391	0.00038771	NaN	5.7834	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144530	+		50023	19834	28586	28587							0.10461036868559859
TVEYVTIRLR	10	Unmodified	_TVEYVTIRLR_					0	0	0			REV__ENST00000302937.8_1_19:54694186-54695312:+|nuORF	REV__ENST00000302937.8_1_19:54694186-54695312:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	417.24695	1248.71902	0.046868	1.9555E-05	0.83174	0.00034704	0.8786	0.00036659	417.24724523897055	28.531	0.53391	28.527	28.333	28.867	-0.0042572	-0.042653	-0.00021052	NaN	5.7834	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165030	+		50024	19834	28586	28587							0.10461036868559859
TVEYVTIRLR	10	Unmodified	_TVEYVTIRLR_					0	0	0			REV__ENST00000302937.8_1_19:54694186-54695312:+|nuORF	REV__ENST00000302937.8_1_19:54694186-54695312:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	417.24695	1248.71902	-0.064448	-2.6891E-05	0.65416	0.00027294	0.58971	0.00024605	417.581878485173	28.594	0.88054	28.594	28.38	29.261	0.0004673	0.024262	-0.0004328	NaN	5.7834	55	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184510	+		50025	19834	28586	28587							0.10461036868559859
TVFAPKLFN	9	Unmodified	_TVFAPKLFN_					0	0	0			REV__ENSG00000146263|ENST00000683635|MMS22L	REV__ENSG00000146263|ENST00000683635|MMS22L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7510986328125	2	518.794935	1035.57532	0.49363	0.00025609	-3.6655	-0.0019016	-3.1718	-0.0016455	518.7928630843113	39.888	0.32144	39.98	39.83	40.151	0.09267					13	10	2	0	0	0	0.24688	1	8452	8452		14.838	2.3067	1	121280	+		50026	16339	28587	28588	61102	61102					0.058952348282673483
TVFDAKRLIGR	11	Unmodified	_TVFDAKRLIGR_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;HSPA8|p.V139Gfs*50|1|0.11|ENSG00000109971|chr11:123060264-123060265|-/CAGTCTAC|frameshift_variant;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000173110|ENST00000309758|HSPA6;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;nc|ENSG00000225217|P48741|HSPA7;ENSG00000204390|ENST00000375654|HSPA1L;ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5;ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L;ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.9225769042969	3	425.922578	1274.7459	-0.27755	-0.00011822	0.023471	9.9968E-06	-0.25408	-0.00010822	425.9226282550102	42.607	1.4039	42.607	42.277	43.681	0					165	51	5	0	0	0	0.011338	3	9291	9247;9291;9342		66.84	48.5	1	7864100			50027	2285;623;8222;10560	28588	28589	61103;61104;61105	61104					0.11952145479745013
TVFDAKRLIGR	11	Unmodified	_TVFDAKRLIGR_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;HSPA8|p.V139Gfs*50|1|0.11|ENSG00000109971|chr11:123060264-123060265|-/CAGTCTAC|frameshift_variant;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000173110|ENST00000309758|HSPA6;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;nc|ENSG00000225217|P48741|HSPA7;ENSG00000204390|ENST00000375654|HSPA1L;ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5;ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L;ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.380615234375	2	638.380229	1274.7459	0.11666	7.4475E-05	0.4535	0.0002895	0.57016	0.00036398	638.3804060329362	42.653	0.59937	42.653	42.383	42.982	0					55	21	4	0	0	0	0.0079105	1	9279	9279		88.364	61.14	1	623610			50028	2285;623;8222;10560	28588	28589	61106	61106					0.11952145479745013
TVFDAKRLIGR	11	Unmodified	_TVFDAKRLIGR_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;HSPA8|p.V139Gfs*50|1|0.11|ENSG00000109971|chr11:123060264-123060265|-/CAGTCTAC|frameshift_variant;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000173110|ENST00000309758|HSPA6;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;nc|ENSG00000225217|P48741|HSPA7;ENSG00000204390|ENST00000375654|HSPA1L;ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5;ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L;ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.9224853515625	3	425.922578	1274.7459	-0.11784	-5.0189E-05	-0.35945	-0.0001531	-0.47729	-0.00020329	425.9224439234024	42.332	1.5987	42.417	42.093	43.691	0.085201					159	57	5	0	0	0	0.0096821	3	9214	9170;9214;9262		70.345	47.329	1	8746200			50029	2285;623;8222;10560	28588	28589	61107;61108;61109	61108					0.11952145479745013
TVFDAKRLIGR	11	Unmodified	_TVFDAKRLIGR_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;HSPA8|p.V139Gfs*50|1|0.11|ENSG00000109971|chr11:123060264-123060265|-/CAGTCTAC|frameshift_variant;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000173110|ENST00000309758|HSPA6;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;nc|ENSG00000225217|P48741|HSPA7;ENSG00000204390|ENST00000375654|HSPA1L;ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5;ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L;ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.3802490234375	2	638.380229	1274.7459	0.50011	0.00031926	-0.11032	-7.0426E-05	0.38979	0.00024883	638.3801706923691	42.342	0.65379	42.428	42.18	42.834	0.085197					51	23	3	0	0	0	0.073872	1	9242	9242		62.869	46.303	1	802860			50030	2285;623;8222;10560	28588	28589	61110	61110					0.11952145479745013
TVFDAKRLIGR	11	Unmodified	_TVFDAKRLIGR_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;HSPA8|p.V139Gfs*50|1|0.11|ENSG00000109971|chr11:123060264-123060265|-/CAGTCTAC|frameshift_variant;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000173110|ENST00000309758|HSPA6;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;nc|ENSG00000225217|P48741|HSPA7;ENSG00000204390|ENST00000375654|HSPA1L;ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5;ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L;ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3805541992188	2	638.380229	1274.7459	0.61114	0.00039014	-0.15156	-9.6755E-05	0.45957	0.00029338	638.380042165651	42.253	0.56618	42.344	42.124	42.691	0.091358					44	19	3	0	0	0	0.0024118	1	9162	9162		101.54	74.32	1	777780			50031	2285;623;8222;10560	28588	28589	61111	61111					0.11952145479745013
TVFDAKRLIGR	11	Unmodified	_TVFDAKRLIGR_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;HSPA8|p.V139Gfs*50|1|0.11|ENSG00000109971|chr11:123060264-123060265|-/CAGTCTAC|frameshift_variant;nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000173110|ENST00000309758|HSPA6;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;nc|ENSG00000225217|P48741|HSPA7;ENSG00000204390|ENST00000375654|HSPA1L;ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5;ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L;ENST00000442006.2_1_1:39174637-39175513:+|nuORF	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.9225158691406	3	425.922578	1274.7459	-0.0091327	-3.8898E-06	-0.52619	-0.00022412	-0.53533	-0.00022801	425.92237437882767	42.246	1.5981	42.337	42.067	43.665	0.091362					172	57	5	0	0	0	0.0095972	3	9173	9173;9216;9266		70.524	47.509	1	8182300			50032	2285;623;8222;10560	28588	28589	61112;61113;61114	61112					0.11952145479745013
TVFDPDLL	8	Unmodified	_TVFDPDLL_					0	0	0			REV__MER4B_dup527|chr6:122787132-122787728:-|2.108215958663084|0.3086731057714426|2.77|542.0|36|3|anti-sense	REV__MER4B_dup527|chr6:122787132-122787728:-|2.108215958663084|0.3086731057714426|2.77|542.0|36|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.2933044433594	2	460.242201	918.469849	0.17124	7.8812E-05	-0.41145	-0.00018937	-0.24021	-0.00011055	460.2419705357328	82.6	0.65354	82.673	82.452	83.106	0.073097					40	25	2	0	0	0	0.34131	1	21519	21519		4.3292	4.3292	1	312960	+		50033	22860	28589	28590	61115	61115					0.0073527391199377234
TVFEDLNFPF	10	Unmodified	_TVFEDLNFPF_					0	0	0			REV__nc|ENSG00000075292|Q14966-5|ZNF638	REV__nc|ENSG00000075292|Q14966-5|ZNF638	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9059143066406	3	410.201007	1227.58119	-0.15763	-6.4661E-05	-1.8638	-0.00076455	-2.0215	-0.00082921	410.53460669999674	31.236	0.51904	31.279	30.996	31.515	0.042366					27	18	2	0	0	0	0.3183	1	5824	5824		5.4027	1.8157	1	69990	+		50034	13807	28590	28591	61116	61116					-0.023497114507335937
TVFEIKTREKK	11	Unmodified	_TVFEIKTREKK_					0	0	0			REV__ENST00000583329.5_1_17:73699767-73702598:+|nuORF	REV__ENST00000583329.5_1_17:73699767-73702598:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.7720031738281	3	460.273276	1377.798	-0.21648	-9.9641E-05	-4.2253	-0.0019448	-4.4418	-0.0020444	460.27154674863635	14.456	0.32997	14.351	14.159	14.489	-0.10466					16	10	2	0	0	0	0.3331	1	757	757		2.2527	0.92309	1	48922	+		50035	16941	28591	28592	61117	61117					0.12421264102840723
TVFENLINK	9	Unmodified	_TVFENLINK_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6;ENST00000557256.2_1_14:21191020-21191104:-|nuORF	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.802001953125	2	539.300581	1076.58661	0.46494	0.00025074	-0.32931	-0.0001776	0.13563	7.3144E-05	539.3005578228285	51.973	1.0116	52.024	51.351	52.363	0.050571					84	36	3	0	0	0	0.12279	1	12108	12108		34.932	5.8505	1	1503500			50036	6334	28592	28593	61118	61118					0.05138012131760661
TVFGFGGFMQR	11	Unmodified	_TVFGFGGFMQR_					0	0	0			REV__nc|ENSG00000100320|O43251-3|RBFOX2	REV__nc|ENSG00000100320|O43251-3|RBFOX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5196228027344	3	416.206098	1245.59646	0.23854	9.928E-05	2.3149	0.00096347	2.5534	0.0010628	416.5413230296932	29.036	0.16053	29.048	28.974	29.134	0.012266					6	5	2	0	0	0	0.33146	1	5149	5149		4.1166	0.79699	1	61830	+		50037	22910	28593	28594	61119	61119					-0.01651123134502086
TVFLIPFTF	9	Unmodified	_TVFLIPFTF_					0	0	0		ENST00000465210.1_1_6:108202247-108202352:-|nuORF	ENST00000465210.1_1_6:108202247-108202352:-|nuORF	ENST00000465210.1_1_6:108202247-108202352:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8079223632812	2	542.807511	1083.60047	0.75743	0.00041114	0.28766	0.00015615	1.0451	0.00056728	542.8075322403537	78.36	2.9728	78.419	77.513	80.486	0.058159					343	116	4	0	0	0	0.25314	3	20470	20086;20470;20514		15.847	3.3156	1	1386000			50038	10790	28594	28595	61120;61121;61122	61121					0.06201289630848805
TVFLIPFTF	9	Unmodified	_TVFLIPFTF_					0	0	0		ENST00000465210.1_1_6:108202247-108202352:-|nuORF	ENST00000465210.1_1_6:108202247-108202352:-|nuORF	ENST00000465210.1_1_6:108202247-108202352:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.807861328125	2	542.807511	1083.60047	0.93496	0.0005075	-0.0086134	-4.6754E-06	0.92634	0.00050283	542.8073887217688	78.34	3.3554	78.31	77.238	80.594	-0.030434					321	127	4	0	0	0	0.28128	1	20395	20395		11.64	3.047	1	1617500			50039	10790	28594	28595	61123	61123					0.06201289630848805
TVFLSPDWLSS	11	Unmodified	_TVFLSPDWLSS_					0	0	0		nc|ENSG00000187266|P19235-2|EPOR	nc|ENSG00000187266|P19235-2|EPOR	nc|ENSG00000187266|P19235-2|EPOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.910400390625	3	417.880044	1250.6183	-0.060256	-2.518E-05	0.19461	8.1325E-05	0.13436	5.6145E-05	417.8800097225037	15.045	0.69903	14.935	14.737	15.436	-0.10981					57	24	4	0	0	0	0.33236	1	940	940		4.4062	0.56024	1	224000			50040	12887	28595	28596	61124	61124					0.0030196009504379617
TVFLSTWNK	9	Unmodified	_TVFLSTWNK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3536987304688	2	548.295299	1094.57605	0.51378	0.00028171	-0.58034	-0.0003182	-0.06656	-3.6494E-05	548.2952079246177	51.556	0.40458	51.556	51.271	51.676	0					23	14	2	0	0	0	0.23749	1	12026	12026		20.415	11.669	1	433450			50041	6752	28596	28597	61125	61125					0.032540294773070855
TVFQQTNQR	9	Unmodified	_TVFQQTNQR_					0	0	0			REV__ENSG00000169180|ENST00000304658|XPO6	REV__ENSG00000169180|ENST00000304658|XPO6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.288330078125	2	561.288537	1120.56252	0.26791	0.00015037	-0.24314	-0.00013647	0.024769	1.3903E-05	561.2883435229594	17.158	0.70295	17.158	16.895	17.598	0					61	24	3	0	0	0	0.25612	1	1533	1533		8.1555	1.9497	1	385480	+		50042	17501	28597	28598	61126	61126					0.007061716981070276
TVFRLSRAR	9	Unmodified	_TVFRLSRAR_					0	0	0			REV__ENST00000534448.5_1_11:47269480-47270343:-|nuORF	REV__ENST00000534448.5_1_11:47269480-47270343:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.2944946289062	2	553.333082	1104.65161	0.33273	0.00018411	-1.0532	-0.00058277	-0.72046	-0.00039866	553.3323315326245	67.291	0.6743	67.369	67.04	67.715	0.078041					53	23	3	0	0	0	0.25202	1	16833	16833		10.824	10.824	1	676900	+		50043	15686	28598	28599	61127	61127					0.10347051448275124
TVFRLSRAR	9	Unmodified	_TVFRLSRAR_					0	0	0			REV__ENST00000534448.5_1_11:47269480-47270343:-|nuORF	REV__ENST00000534448.5_1_11:47269480-47270343:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.333082	1104.65161	0.32326	0.00017887	-1.0112	-0.00055952	-0.68792	-0.00038065	553.3324932629034	67.397	0.53814	67.397	67.135	67.673	0	0.02026	9.2587E-05	NaN	10.824	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	512180	+		50044	15686	28598	28599							0.10347051448275124
TVFRLSRAR	9	Unmodified	_TVFRLSRAR_					0	0	0			REV__ENST00000534448.5_1_11:47269480-47270343:-|nuORF	REV__ENST00000534448.5_1_11:47269480-47270343:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	553.333082	1104.65161	0.17377	9.6152E-05	-1.2602	-0.00069731	-1.0864	-0.00060116	553.3323093947254	67.381	0.55824	67.365	67.086	67.644	-0.016296	-0.011893	-0.00018299	NaN	10.824	42	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	518240	+		50045	15686	28598	28599							0.10347051448275124
TVFVQPLDLVK	11	Unmodified	_TVFVQPLDLVK_					0	0	0		ENST00000574710.1_1_17:4841038-4842521:-|nuORF;ENSG00000108528|ENST00000225665|SLC25A11	ENST00000574710.1_1_17:4841038-4842521:-|nuORF	ENST00000574710.1_1_17:4841038-4842521:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.8739013671875	2	629.873914	1257.73327	0.36572	0.00023036	-0.47313	-0.00029801	-0.10741	-6.7655E-05	629.8738936627676	67.847	0.40038	67.847	67.647	68.048	0					27	13	3	0	0	0	0.1269	2	17062	17062;17073		37.771	23.366	1	279520			50046	2192	28599	28600	61128;61129	61128					0.11471689296831755
TVFVQPLDLVK	11	Unmodified	_TVFVQPLDLVK_					0	0	0		ENST00000574710.1_1_17:4841038-4842521:-|nuORF;ENSG00000108528|ENST00000225665|SLC25A11	ENST00000574710.1_1_17:4841038-4842521:-|nuORF	ENST00000574710.1_1_17:4841038-4842521:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.8272094726562	2	629.873914	1257.73327	0.36462	0.00022966	-0.57522	-0.00036232	-0.2106	-0.00013265	629.8735763364753	67.665	0.62228	67.743	67.546	68.169	0.078041					32	21	3	0	0	0	0.32061	1	17065	17065		21.799	9.5588	1	206830			50047	2192	28599	28600	61130	61130					0.11471689296831755
TVFVQPLDLVK	11	Unmodified	_TVFVQPLDLVK_					0	0	0		ENST00000574710.1_1_17:4841038-4842521:-|nuORF;ENSG00000108528|ENST00000225665|SLC25A11	ENST00000574710.1_1_17:4841038-4842521:-|nuORF	ENST00000574710.1_1_17:4841038-4842521:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.8739624023438	2	629.873914	1257.73327	0.28155	0.00017734	-0.49429	-0.00031134	-0.21274	-0.000134	630.3746822362232	67.78	0.45493	67.764	67.562	68.017	-0.016296					28	15	3	0	0	0	0.20863	1	17063	17063		30.431	13.319	1	247220			50048	2192	28599	28600	61131	61131					0.11471689296831755
TVGAPHTWPHI	11	Unmodified	_TVGAPHTWPHI_					0	0	0		ENSG00000080986|ENST00000261597|NDC80;ENST00000574567.1_1_18:2578953-2579046:+|nuORF	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.2434387207031	3	405.88049	1214.61964	-0.09655	-3.9188E-05	0.0047132	1.913E-06	-0.091837	-3.7275E-05	405.8802987550027	44.018	0.34886	44.102	44.049	44.398	0.083996					16	12	2	0	0	0	0.29118	1	9728	9728		12.856	5.247	1	341060			50049	1172	28600	28601	61132	61132					0.02091638974457055
TVGELLSKSP	10	Unmodified	_TVGELLSKSP_					0	0	0			REV__ENSG00000187860|ENST00000338306|CCDC157	REV__ENSG00000187860|ENST00000338306|CCDC157	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2960205078125	2	515.792589	1029.57063	-0.078589	-4.0536E-05	-0.92531	-0.00047727	-1.0039	-0.0005178	515.7926632607098	30.334	0.47991	30.361	30.189	30.669	0.027157					25	16	2	0	0	0	0.31143	1	5617	5617		17.113	0.96379	1	238640	+		50050	18528	28601	28602	61133	61133					0.05702305894874371
TVGETISVTF	10	Unmodified	_TVGETISVTF_					0	0	0			REV__ENSG00000168824|ENST00000621129|NSG1	REV__ENSG00000168824|ENST00000621129|NSG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2984619140625	2	527.276772	1052.53899	0.55909	0.0002948	-0.47788	-0.00025197	0.081218	4.2824E-05	527.2771478772436	66.688	0.97162	66.688	66.396	67.368	0					111	33	6	0	0	0	0.30958	1	16759	16759		19.257	4.4187	1	975720	+		50051	17481	28602	28603	61134	61134					0.014823131409002599
TVGFDHSNSTR	11	Unmodified	_TVGFDHSNSTR_					0	0	0			REV__ENST00000567980.5_1_16:81819579-81955027:+|nuORF	REV__ENST00000567980.5_1_16:81819579-81955027:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.9190673828125	3	407.526664	1219.55816	0.035974	1.466E-05	-1.5954	-0.00065015	-1.5594	-0.00063549	407.52587032732123	29.937	0.67098	29.949	29.417	30.088	0.012266					30	22	2	0	0	0	0.33175	1	5267	5267		2.2527	0.51045	1	63457	+		50052	22386	28603	28604	61135	61135					-0.042833375154714304
TVGFTPRAP	9	Unmodified	_TVGFTPRAP_					0	0	0		ENST00000166139.8_1_19:682916-683111:+|nuORF	ENST00000166139.8_1_19:682916-683111:+|nuORF	ENST00000166139.8_1_19:682916-683111:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.79241943359375	2	473.261259	944.507966	0.13503	6.3907E-05	0.41958	0.00019857	0.55462	0.00026248	473.26141391818584	34.165	0.53045	34.165	33.969	34.5	0					26	18	2	0	0	0	0.21389	1	6716	6716		19.257	2.3147	1	159380			50053	8785	28604	28605	61136	61136					0.033492046173250856
TVGGFLPF	8	Unmodified	_TVGGFLPF_					0	0	0		ENSG00000100926|ENST00000261789|TM9SF1;nc|ENSG00000100926|O15321-2|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	ENSG00000100926|ENST00000261789|TM9SF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.2508239746094	2	419.228897	836.44324	0.044198	1.8529E-05	-4.2908	-0.0017988	-4.2466	-0.0017803	419.2273509229938	26.591	0.36905	26.552	26.402	26.771	-0.038671					16	12	2	0	0	0	0.34185	1	4393	4393		10.183	0	1	57506			50054	1646	28605	28606	61137	61137					0.018476298113341727
TVGIDFREK	9	Unmodified	_TVGIDFREK_					0	0	0		ENST00000586594.1_1_18:52544816-52555250:+|nuORF;nc|ENSG00000069974|P51159-2|RAB27A;ENSG00000041353|ENST00000262094|RAB27B;ENSG00000069974|ENST00000336787|RAB27A	ENST00000586594.1_1_18:52544816-52555250:+|nuORF	ENST00000586594.1_1_18:52544816-52555250:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2652587890625	2	532.790381	1063.56621	0.016067	8.5603E-06	0.33594	0.00017898	0.352	0.00018754	532.7905203949363	27.912	0.48223	27.908	27.684	28.167	-0.0042572					26	16	2	0	0	0	0.25938	1	4790	4790		4.3292	0	1	115980			50055	604	28606	28607	61138	61138					0.036968414719467546
TVGIRWVGL	9	Unmodified	_TVGIRWVGL_					0	0	0			REV__ENST00000542977.5_2_11:71740313-71752021:-|nuORF	REV__ENST00000542977.5_2_11:71740313-71752021:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2904968261719	2	500.800552	999.58655	0.41941	0.00021004	-0.27597	-0.0001382	0.14345	7.1838E-05	501.30330202166044	88.545	0.82112	88.634	88.073	88.894	0.089195					52	37	2	0	0	0	0.25202	1	23444	23444		10.824	1.4408	1	207600	+		50056	22142	28607	28608	61139	61139					0.08674056922416185
TVGIRWVGL	9	Unmodified	_TVGIRWVGL_					0	0	0			REV__ENST00000542977.5_2_11:71740313-71752021:-|nuORF	REV__ENST00000542977.5_2_11:71740313-71752021:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.290771484375	2	500.800552	999.58655	0.43377	0.00021723	-2.218	-0.0011108	-1.7842	-0.00089355	500.7984331411603	89.231	0.83432	89.23	88.78	89.614	-0.00080872					79	40	3	0	0	0	0.25202	1	23475	23475		10.824	1.4408	1	277570	+		50057	22142	28607	28608	61140	61140					0.08674056922416185
TVGKNGSSFQK	11	Unmodified	_TVGKNGSSFQK_					0	0	0		ENSG00000176473|ENST00000402312|WDR25	ENSG00000176473|ENST00000402312|WDR25	ENSG00000176473|ENST00000402312|WDR25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.8040161132812	2	576.80402	1151.59349	0.12271	7.0778E-05	0.058198	3.3569E-05	0.18091	0.00010435	576.8040672655974	15.611	0.5572	15.502	15.285	15.842	-0.10981					50	18	4	0	0	0	0.45108	1	1121	1121		4.5289	0	1	199270			50058	6931	28608	28609	61141	61141					0.023753250123490943
TVGLPHQLK	9	Unmodified	_TVGLPHQLK_					0	0	0			REV__nc|ENSG00000196865|Q8NBF2-2|NHLRC2	REV__nc|ENSG00000196865|Q8NBF2-2|NHLRC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.3081970214844	2	496.798009	991.581465	0.19941	9.9066E-05	-1.9233	-0.00095551	-1.7239	-0.00085644	496.79815611448953	31.31	0.54669	31.31	31.007	31.553	0					40	19	3	0	0	0	0.23235	1	5804	5804		21.537	0	1	176840	+		50059	18690	28609	28610	61142	61142					0.08533753059805349
TVGSFLLSAI	10	Unmodified	_TVGSFLLSAI_					0	0	0		ENST00000575944.1_1_17:1519839-1531078:-|nuORF;nc|ENSG00000167703|Q8N370-2|SLC43A2;ENST00000572135.5_1_17:1488956-1531469:-|nuORF;ENSG00000167703|ENST00000301335|SLC43A2;nc|ENSG00000167703|Q8N370-3|SLC43A2	ENST00000575944.1_1_17:1519839-1531078:-|nuORF	ENST00000575944.1_1_17:1519839-1531078:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.3194274902344	2	504.292225	1006.5699	0.09105	4.5916E-05	2.5136	0.0012676	2.6047	0.0013135	504.29406005753	80.822	0.71764	80.887	80.678	81.396	0.065094					49	34	2	0	0	0	0.15562	1	21050	21050		58.679	0	1	290100			50060	6202	28610	28611	61143	61143					0.06687511245809219
TVGSFLLSAI	10	Unmodified	_TVGSFLLSAI_					0	0	0		ENST00000575944.1_1_17:1519839-1531078:-|nuORF;nc|ENSG00000167703|Q8N370-2|SLC43A2;ENST00000572135.5_1_17:1488956-1531469:-|nuORF;ENSG00000167703|ENST00000301335|SLC43A2;nc|ENSG00000167703|Q8N370-3|SLC43A2	ENST00000575944.1_1_17:1519839-1531078:-|nuORF	ENST00000575944.1_1_17:1519839-1531078:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.3194885253906	2	504.292225	1006.5699	0.32878	0.0001658	1.4749	0.00074378	1.8037	0.00090958	504.29364819455986	81.024	0.58925	80.997	80.759	81.348	-0.026825					36	24	2	0	0	0	0.15562	1	21076	21076		41.84	0	1	204960			50061	6202	28610	28611	61144	61144					0.06687511245809219
TVGVASLLPPP	11	Unmodified	_TVGVASLLPPP_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2659912109375	2	525.813325	1049.6121	0.45309	0.00023824	-0.53085	-0.00027913	-0.077764	-4.0889E-05	525.812753278496	41.896	0.37243	41.896	41.741	42.113	0					18	15	2	0	0	0	0.31824	1	9047	9047		13.906	3.0821	1	828880			50062	3971	28611	28612	61145	61145					0.08927486654192762
TVGVASLLPPP	11	Unmodified	_TVGVASLLPPP_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	525.813325	1049.6121	0.66259	0.0003484	-0.029146	-1.5325E-05	0.63345	0.00033308	525.8130296637747	42.073	0.37337	42.165	41.981	42.354	0.091362	0.1341	0.000282	NaN	13.906	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192720			50063	3971	28611	28612							0.08927486654192762
TVGYEVQIK	9	Unmodified	_TVGYEVQIK_					0	0	0			REV__ENSG00000011405|ENST00000691414|PIK3C2A	REV__ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2794799804688	2	518.787307	1035.56006	0.75743	0.00039295	0.37828	0.00019625	1.1357	0.00058919	518.7874277393522	50.431	0.38768	50.431	50.267	50.654	0					21	13	2	0	0	0	0.12743	1	11648	11648		24.021	0	1	215000	+		50064	13430	28612	28613	61146	61146					0.04370323240414109
TVHAKQRRN	9	Unmodified	_TVHAKQRRN_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7963256835938	2	555.317963	1108.62137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.87	1	114.87	114.37	115.37	0								0	0	0	0.26513	1	29787	29787		1.4819	0.79152	1		+		50065	13586	28613	28614	61147	61147					0.07140692783082159
TVHAKQRRN	9	Unmodified	_TVHAKQRRN_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3171997070312	2	555.317963	1108.62137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.2	1	116.18	115.68	116.68	-0.022781								0	0	0	0.26513	1	30108	30108		1.4819	0	1		+		50066	13586	28613	28614	61148	61148					0.07140692783082159
TVHCATAEHYM	11	Unmodified	_TVHCATAEHYM_					0	0	0			REV__nc|ENSG00000115464|Q70CQ2-2|USP34	REV__nc|ENSG00000115464|Q70CQ2-2|USP34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.89239501953125	3	421.514602	1261.52198	-0.11269	-4.7502E-05	0.84184	0.00035485	0.72915	0.00030735	421.51493282692763	26.332	0.83983	26.294	26.069	26.909	-0.03867					41	29	2	0	0	0	0.33238	1	4355	4355		1.3296	0	1	291710	+		50067	14879	28614	28615	61149	61149					-0.09832254008188102
TVHNIIVGK	9	Unmodified	_TVHNIIVGK_					0	0	0		nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;ENSG00000110048|ENST00000263847|OSBP	nc|ENSG00000184792|Q969R2-5|OSBP2	nc|ENSG00000184792|Q969R2-5|OSBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.79791259765625	2	490.798009	979.581465	0.17657	8.6663E-05	0.033867	1.6622E-05	0.21044	0.00010328	490.7979964847367	23.673	0.7209	23.673	23.308	24.029	0					42	24	2	0	0	0	0.13748	1	3497	3497		32.786	8.7651	1	132680			50068	7473	28615	28616	61150	61150					0.09085753059798662
TVHNIIVGK	9	Unmodified	_TVHNIIVGK_					0	0	0		nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;ENSG00000110048|ENST00000263847|OSBP	nc|ENSG00000184792|Q969R2-5|OSBP2	nc|ENSG00000184792|Q969R2-5|OSBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7976379394531	2	490.798009	979.581465	0.25103	0.00012321	-0.25707	-0.00012617	-0.0060428	-2.9658E-06	490.79793675154826	23.732	0.85435	23.659	23.231	24.085	-0.072559					47	29	2	0	0	0	0.19747	1	3529	3529		24.021	8.1734	1	123260			50069	7473	28615	28616	61151	61151					0.09085753059798662
TVHNIIVGK	9	Unmodified	_TVHNIIVGK_					0	0	0		nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;ENSG00000110048|ENST00000263847|OSBP	nc|ENSG00000184792|Q969R2-5|OSBP2	nc|ENSG00000184792|Q969R2-5|OSBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7982482910156	2	490.798009	979.581465	0.4058	0.00019917	-0.31235	-0.0001533	0.093449	4.5865E-05	490.7978064591865	23.789	0.76992	23.75	23.311	24.081	-0.038927					46	26	2	0	0	0	0.13296	1	3550	3550		33.445	11.908	1	176320			50070	7473	28615	28616	61152	61152					0.09085753059798662
TVHRLGKTI	9	Unmodified	_TVHRLGKTI_					0	0	0			REV__nc|ENSG00000112186|P40123-2|CAP2	REV__nc|ENSG00000112186|P40123-2|CAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7207641601562	2	512.816733	1023.61891	0.90539	0.0004643	2.9451	0.0015103	3.8505	0.0019746	513.3208421669834	55.904	0.28941	55.904	55.732	56.021	0					26	9	4	0	0	0	0.24688	1	13348	13348		10.074	8.2297	1	188640	+		50071	14762	28616	28617	61153	61153					0.10804844325411977
TVIAELQQF	9	Unmodified	_TVIAELQQF_					0	0	0		nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO;ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF	nc|ENSG00000165282|Q8TEQ8-2|PIGO	nc|ENSG00000165282|Q8TEQ8-2|PIGO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8001708984375	2	524.787307	1047.56006	0.59254	0.00031096	0.31601	0.00016584	0.90855	0.0004768	524.7874996688537	71.862	0.32318	71.835	71.658	71.981	-0.027275					20	11	2	0	0	0	0.1669	1	18309	18309		28.487	5.3384	1	246800			50072	5946	28617	28618	61154	61154					0.038183232404207956
TVIAELQQF	9	Unmodified	_TVIAELQQF_					0	0	0		nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO;ENST00000465745.6_1_9:35090240-35092764:-|nuORF;ENST00000474436.1_1_9:35090976-35092764:-|nuORF	nc|ENSG00000165282|Q8TEQ8-2|PIGO	nc|ENSG00000165282|Q8TEQ8-2|PIGO	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	524.787307	1047.56006	0.5702	0.00029923	0.32474	0.00017042	0.89493	0.00046965	524.7873628688952	71.813	0.29953	71.813	71.664	71.963	0	-0.010548	6.396E-06	NaN	28.487	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216560			50073	5946	28617	28618							0.038183232404207956
TVIDGSPLMMI	11	Unmodified	_TVIDGSPLMMI_					0	0	0		ENST00000482929.6_1_1:35925981-35940435:-|nuORF	ENST00000482929.6_1_1:35925981-35940435:-|nuORF	ENST00000482929.6_1_1:35925981-35940435:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.8065185546875	2	588.803785	1175.59302	0.30757	0.0001811	2.0681	0.0012177	2.3757	0.0013988	588.8056912474707	59.816	0.51635	59.804	59.569	60.085	-0.011486					28	17	2	0	0	0	0.22366	1	14591	14591		29.082	5.061	1	485640			50074	11055	28618	28619	61155	61155					0.012244459766179716
TVIFPGLPL	9	Unmodified	_TVIFPGLPL_					0	0	0		nc|ENSG00000100116|O75600-2|GCAT	nc|ENSG00000100116|O75600-2|GCAT	nc|ENSG00000100116|O75600-2|GCAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2270812988281	2	478.794404	955.574254	0.43515	0.00020835	-0.50999	-0.00024418	-0.07484	-3.5833E-05	478.7940947250549	83.126	0.47368	83.105	82.868	83.342	-0.020584					31	18	2	0	0	0	0.24311	1	21703	21703		16.942	16.942	1	250020			50075	12610	28619	28620	61156	61156					0.09469020459391686
TVIGIPIAK	9	Unmodified	_TVIGIPIAK_					0	0	0			REV__ENSG00000003989|ENST00000494857|SLC7A2	REV__ENSG00000003989|ENST00000494857|SLC7A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.28546142578125	2	456.299853	910.585153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.946	1	28.959	28.459	29.459	0.013474								0	0	0	0.22065	1	5112	5112		15.847	0	1		+		50076	13328	28620	28621	61157	61157					0.1262842283365444
TVIGWLPSTF	10	Unmodified	_TVIGWLPSTF_					0	0	0		ENST00000359079.8_1_4:108814533-108816604:+|nuORF;ENST00000394684.8_1_4:108779692-108816604:+|nuORF;ENST00000506462.5_1_4:108745790-108816604:+|nuORF	ENST00000359079.8_1_4:108814533-108816604:+|nuORF	ENST00000359079.8_1_4:108814533-108816604:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3402709960938	2	560.8055	1119.59645	0.20426	0.00011455	1.0615	0.00059531	1.2658	0.00070986	561.3077763629129	92.916	0.11873	92.916	92.882	93.001	0					19	10	2	0	0	0	0.31691	1	24730	24730		9.3831	3.6513	1	42330			50077	9659	28621	28622	61158	61158					0.04143200137127678
TVIGWLPSTF	10	Unmodified	_TVIGWLPSTF_					0	0	0		ENST00000359079.8_1_4:108814533-108816604:+|nuORF;ENST00000394684.8_1_4:108779692-108816604:+|nuORF;ENST00000506462.5_1_4:108745790-108816604:+|nuORF	ENST00000359079.8_1_4:108814533-108816604:+|nuORF	ENST00000359079.8_1_4:108814533-108816604:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3411865234375	2	560.8055	1119.59645	0.24386	0.00013676	1.6179	0.00090734	1.8618	0.0010441	560.8054669275313	92.126	0.25163	92.126	92.056	92.307	0					25	18	2	0	0	0	0.31629	1	24524	24524		10.074	0.6908	1	40879			50078	9659	28621	28622	61159	61159					0.04143200137127678
TVIGWLPSTF	10	Unmodified	_TVIGWLPSTF_					0	0	0		ENST00000359079.8_1_4:108814533-108816604:+|nuORF;ENST00000394684.8_1_4:108779692-108816604:+|nuORF;ENST00000506462.5_1_4:108745790-108816604:+|nuORF	ENST00000359079.8_1_4:108814533-108816604:+|nuORF	ENST00000359079.8_1_4:108814533-108816604:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.3244018554688	2	560.8055	1119.59645	0.48578	0.00027243	0.72435	0.00040622	1.2101	0.00067865	561.3073392711074	76.666	1.1365	76.635	76.346	77.482	-0.031487					65	41	2	0	0	0	0.31039	1	19849	19849		13.042	0	1	312090			50079	9659	28621	28622	61160	61160					0.04143200137127678
TVIGWLPSTF	10	Unmodified	_TVIGWLPSTF_					0	0	0		ENST00000359079.8_1_4:108814533-108816604:+|nuORF;ENST00000394684.8_1_4:108779692-108816604:+|nuORF;ENST00000506462.5_1_4:108745790-108816604:+|nuORF	ENST00000359079.8_1_4:108814533-108816604:+|nuORF	ENST00000359079.8_1_4:108814533-108816604:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.8055	1119.59645	0.34052	0.00019097	1.3484	0.0007562	1.6889	0.00094717	561.3082985025939	92.179	0.097305	92.268	92.214	92.311	0.089195	0.039811	-0.00019839	NaN	10.074	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44686			50080	9659	28621	28622							0.04143200137127678
TVIHFNNPK	9	Unmodified	_TVIHFNNPK_					0	0	0		nc|ENSG00000134717|Q96K17-2|BTF3L4;ENST00000418879.1_1_6:137865036-137865375:-|nuORF;ENSG00000134717|ENST00000313334|BTF3L4;nc|ENSG00000145741|P20290-2|BTF3;BTF3|p.S201*|1|0.34|ENSG00000145741|chr5:73505219-73505222|CCAA/-|frameshift_variant;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000134717|Q96K17-2|BTF3L4	nc|ENSG00000134717|Q96K17-2|BTF3L4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2827758789062	2	535.293091	1068.57163	0.19367	0.00010367	-0.39615	-0.00021206	-0.20248	-0.00010838	535.2929549717156	27.741	0.89748	27.741	27.38	28.277	0					70	30	3	0	0	0	0.12642	1	4753	4753		34.402	16.255	1	478270			50081	81	28622	28623	61161	61161					0.04008565054414248
TVIHFNNPK	9	Unmodified	_TVIHFNNPK_					0	0	0		nc|ENSG00000134717|Q96K17-2|BTF3L4;ENST00000418879.1_1_6:137865036-137865375:-|nuORF;ENSG00000134717|ENST00000313334|BTF3L4;nc|ENSG00000145741|P20290-2|BTF3;BTF3|p.S201*|1|0.34|ENSG00000145741|chr5:73505219-73505222|CCAA/-|frameshift_variant;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000134717|Q96K17-2|BTF3L4	nc|ENSG00000134717|Q96K17-2|BTF3L4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.28271484375	2	535.293091	1068.57163	0.0014437	7.7282E-07	-0.1464	-7.837E-05	-0.14496	-7.7597E-05	535.2931200099312	27.728	0.81873	27.707	27.411	28.23	-0.021412					63	28	3	0	0	0	0.12642	1	4757	4757		34.402	16.255	1	557320			50082	81	28622	28623	61162	61162					0.04008565054414248
TVIHFNNPK	9	Unmodified	_TVIHFNNPK_					0	0	0		nc|ENSG00000134717|Q96K17-2|BTF3L4;ENST00000418879.1_1_6:137865036-137865375:-|nuORF;ENSG00000134717|ENST00000313334|BTF3L4;nc|ENSG00000145741|P20290-2|BTF3;BTF3|p.S201*|1|0.34|ENSG00000145741|chr5:73505219-73505222|CCAA/-|frameshift_variant;ENSG00000145741|ENST00000380591|BTF3	nc|ENSG00000134717|Q96K17-2|BTF3L4	nc|ENSG00000134717|Q96K17-2|BTF3L4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2827758789062	2	535.293091	1068.57163	0.081711	4.3739E-05	0.037204	1.9915E-05	0.11891	6.3654E-05	535.2930635379378	27.701	0.85741	27.69	27.318	28.176	-0.011562					60	29	3	0	0	0	0.2719	1	4758	4758		13.042	6.3193	1	466170			50083	81	28622	28623	61163	61163					0.04008565054414248
TVIHNYQISGL	11	Unmodified	_TVIHNYQISGL_					0	0	0		nc|ENSG00000140471|Q8NG48-2|LINS1	nc|ENSG00000140471|Q8NG48-2|LINS1	nc|ENSG00000140471|Q8NG48-2|LINS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.91778564453125	3	415.559305	1243.65609	0.24286	0.00010092	-0.2449	-0.00010177	-0.0020365	-8.4628E-07	415.55905323368006	35.473	0.35496	35.548	35.377	35.732	0.075306					23	12	2	0	0	0	0.33064	1	7131	7131		1.3296	0	1	369470			50084	12728	28623	28624	61164	61164					0.04400471080521129
TVIHVKAHF	9	Unmodified	_TVIHVKAHF_					0	0	0		nc|ENSG00000072415|Q8N3R9-2|PALS1;ENSG00000072415|ENST00000261681|PALS1	nc|ENSG00000072415|Q8N3R9-2|PALS1	nc|ENSG00000072415|Q8N3R9-2|PALS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7579345703125	2	526.306001	1050.59745	0.59278	0.00031199	2.8431	0.0014963	3.4359	0.0018083	526.8088169845455	39.197	0.49243	39.296	39.046	39.539	0.099407					42	17	3	0	0	0	0.25706	1	8162	8162		6.7232	0.96273	1	424400			50085	981	28624	28625	61165	61165					0.07417459296698325
TVILGKKTEVK	11	Unmodified	_TVILGKKTEVK_					0	0	0		nc|ENSG00000182253|O15061-2|SYNM;ENSG00000182253|ENST00000336292|SYNM	nc|ENSG00000182253|O15061-2|SYNM	nc|ENSG00000182253|O15061-2|SYNM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.2178955078125	3	405.927218	1214.75982	-0.098091	-3.9818E-05	-0.0086456	-3.5095E-06	-0.10674	-4.3327E-05	405.92712737815066	43.255	0.51081	43.255	43.008	43.519	0					28	18	2	0	0	0	0.33056	1	9486	9486		5.8681	0.084707	1	187180			50086	7284	28625	28626	61166	61166					0.16103378188176976
TVILLPYVSK	10	Unmodified	_TVILLPYVSK_					0	0	0		ENST00000452360.6_1_4:942397-950358:+|nuORF;ENST00000506669.1_1_4:946199-949276:+|nuORF;ENST00000515876.5_1_4:941527-949679:+|nuORF;nc|ENSG00000127419|Q9BSA9-2|TMEM175;ENSG00000127419|ENST00000264771|TMEM175	ENST00000452360.6_1_4:942397-950358:+|nuORF;nc|ENSG00000127419|Q9BSA9-2|TMEM175	ENST00000452360.6_1_4:942397-950358:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2794799804688	2	566.85245	1131.69035	0.44021	0.00024953	-0.3601	-0.00020412	0.080105	4.5408E-05	566.8523477912106	62.841	0.7989	62.936	62.712	63.511	0.095722					59	28	3	0	0	0	0.23628	1	15518	15518		42.312	5.8063	1	464840			50087	10656;3319	28626	28627	61167	61167					0.1297691923941784
TVILLPYVSK	10	Unmodified	_TVILLPYVSK_					0	0	0		ENST00000452360.6_1_4:942397-950358:+|nuORF;ENST00000506669.1_1_4:946199-949276:+|nuORF;ENST00000515876.5_1_4:941527-949679:+|nuORF;nc|ENSG00000127419|Q9BSA9-2|TMEM175;ENSG00000127419|ENST00000264771|TMEM175	ENST00000452360.6_1_4:942397-950358:+|nuORF;nc|ENSG00000127419|Q9BSA9-2|TMEM175	ENST00000452360.6_1_4:942397-950358:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2793579101562	2	566.85245	1131.69035	0.2289	0.00012975	-0.086574	-4.9075E-05	0.14232	8.0676E-05	566.8525187794583	62.985	0.86135	62.976	62.675	63.537	-0.0085526					51	31	2	0	0	0	0.24727	1	15534	15534		38.615	2.1085	1	428620			50088	10656;3319	28626	28627	61168	61168					0.1297691923941784
TVIMHPQLCL	10	Unmodified	_TVIMHPQLCL_					0	0	0		ENSG00000196242|ENST00000641802|OR2C3	ENSG00000196242|ENST00000641802|OR2C3	ENSG00000196242|ENST00000641802|OR2C3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3687744140625	2	577.806662	1153.59877	0.21384	0.00012356	2.2851	0.0013204	2.499	0.0014439	577.808128812506	69.101	0.49799	69.101	68.841	69.339	0					33	17	3	0	0	0	0.31358	1	17498	17498		13.906	3.0821	1	261280			50089	7844	28627	28628	61169	61169					0.028115892789401187
TVIQDYNY	8	Unmodified	_TVIQDYNY_					0	0	0		nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-3|MEN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.3016662597656	2	508.24019	1014.46583	0.67804	0.00034461	1.2802	0.00065065	1.9582	0.00099525	508.24087578594896	47.989	0.63252	48.036	47.968	48.601	0.047523					36	23	2	0	0	0	0.3366	1	11097	11097		12.532	0.89125	1	440260			50090	3738	28628	28629	61170	61170					-0.04082815581716659
TVIQDYNY	8	Unmodified	_TVIQDYNY_					0	0	0		nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-3|MEN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.24019	1014.46583	0.51544	0.00026197	1.5506	0.00078809	2.0661	0.0010501	508.24089283434205	48.061	0.532	48.105	47.926	48.458	0.04332	0.0057107	0.00011327	NaN	12.532	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	441640			50091	3738	28628	28629							-0.04082815581716659
TVIRARVSGDF	11	Unmodified	_TVIRARVSGDF_					0	0	0			REV__ENST00000461347.5_1_2:232319904-232323320:-|nuORF	REV__ENST00000461347.5_1_2:232319904-232323320:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5534362792969	3	407.56305	1219.66732	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.36	1	31.401	30.901	31.901	0.040991								0	0	0	0.34539	1	5846	5846		9.2438	0.79947	1		+		50092	14859	28629	28630	61171	61171					0.06627293174665283
TVIRDVEQQFK	11	Unmodified	_TVIRDVEQQFK_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.91741943359375	3	454.917381	1361.73031	0.11397	5.1846E-05	-0.1148	-5.2223E-05	-0.00082883	-3.7705E-07	454.9173512393949	44.135	0.84002	44.135	43.819	44.659	0					70	30	4	0	0	0	0.0061529	1	9749	9749		77.813	48.532	1	1121300			50093	1056	28630	28631	61172	61172					0.06391814172002341
TVIRDVEQQFK	11	Unmodified	_TVIRDVEQQFK_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.9172668457031	3	454.917381	1361.73031	0.25704	0.00011693	-0.41343	-0.00018808	-0.15639	-7.1144E-05	454.9172517657319	43.577	0.79032	43.654	43.234	44.024	0.077515					72	28	4	0	0	0	0.078494	2	9556	9556;9616		45.004	32.776	1	1276100			50094	1056	28630	28631	61173;61174	61173					0.06391814172002341
TVIRDVEQQFK	11	Unmodified	_TVIRDVEQQFK_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.9173583984375	3	454.917381	1361.73031	0.23465	0.00010675	-0.40848	-0.00018582	-0.17382	-7.9076E-05	454.91731980091396	43.562	0.74892	43.646	43.327	44.075	0.083992					76	27	4	0	0	0	0.098551	2	9582	9531;9582		40.317	32.888	1	1189100			50095	1056	28630	28631	61175;61176	61176					0.06391814172002341
TVIRDVEQQFK	11	Unmodified	_TVIRDVEQQFK_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	454.917381	1361.73031	0.38887	0.0001769	-3.129	-0.0014234	-2.7401	-0.0012465	455.2490821395026	44.446	0.13516	44.515	44.463	44.599	0.068569	0.18997	-0.0041029	NaN	77.813	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45377			50096	1056	28630	28631							0.06391814172002341
TVIRDVEQQFK	11	Unmodified	_TVIRDVEQQFK_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	454.917381	1361.73031	0.12014	5.4653E-05	-2.4711	-0.0011241	-2.3509	-0.0010695	455.250310454209	43.202	0.14251	43.286	43.241	43.384	0.083996	-0.18425	-0.0027834	NaN	45.004	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67835			50097	1056	28630	28631							0.06391814172002341
TVIRGWKL	8	Unmodified	_TVIRGWKL_					0	0	0		ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	ENSG00000140443|ENST00000650285|IGF1R	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.7898254394531	2	486.803094	971.591636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.446	1	57.429	56.929	57.929	-0.0172								0	0	0	0.34734	1	13857	13857		15.847	1.0089	1				50098	4302	28631	28632	61177	61177					0.10470360785029698
TVIRGWNII	9	Unmodified	_TVIRGWNII_					0	0	0			REV__nc|ENSG00000140379|Q16548-2|BCL2A1	REV__nc|ENSG00000140379|Q16548-2|BCL2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.3193969726562	2	536.319109	1070.62366	0.3964	0.00021259	-0.49143	-0.00026356	-0.095034	-5.0969E-05	536.3189686467446	35.617	0.66562	35.703	35.504	36.17	0.08625					48	23	3	0	0	0	0.18803	1	7166	7166		25.399	25.399	1	464950	+		50099	16030	28632	28633	61178	61178					0.09117728468186215
TVIRGWNII	9	Unmodified	_TVIRGWNII_					0	0	0			REV__nc|ENSG00000140379|Q16548-2|BCL2A1	REV__nc|ENSG00000140379|Q16548-2|BCL2A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	536.319109	1070.62366	0.60431	0.0003241	-1.22	-0.00065433	-0.61572	-0.00033022	536.3187506245324	35.787	0.73501	35.787	35.547	36.282	0	0.042644	-0.00075666	NaN	25.399	53	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351390	+		50100	16030	28632	28633							0.09117728468186215
TVIRGWNII	9	Unmodified	_TVIRGWNII_					0	0	0			REV__nc|ENSG00000140379|Q16548-2|BCL2A1	REV__nc|ENSG00000140379|Q16548-2|BCL2A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	536.319109	1070.62366	0.43007	0.00023066	-0.30997	-0.00016624	0.1201	6.4415E-05	536.3190139955767	35.661	0.43813	35.743	35.57	36.008	0.082355	-0.0015391	0.00021951	NaN	25.399	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387050	+		50101	16030	28632	28633							0.09117728468186215
TVIRGWNII	9	Unmodified	_TVIRGWNII_					0	0	0			REV__nc|ENSG00000140379|Q16548-2|BCL2A1	REV__nc|ENSG00000140379|Q16548-2|BCL2A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	536.319109	1070.62366	0.3964	0.00021259	-0.49143	-0.00026356	-0.095034	-5.0969E-05	536.3189686467446	35.617	0.66562	35.703	35.504	36.17	0.08625	-0.041105	2.4865E-05	NaN	25.399	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	464950	+		50102	16030	28632	28633							0.09117728468186215
TVIRQRYLNLF	11	Unmodified	_TVIRQRYLNLF_					0	0	0		ENSG00000079313|ENST00000170168|REXO1	ENSG00000079313|ENST00000170168|REXO1	ENSG00000079313|ENST00000170168|REXO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.94561767578125	3	474.945383	1421.81432	0.31994	0.00015196	-0.062999	-2.9921E-05	0.25694	0.00012203	474.9451714204123	42.202	0.53049	42.287	42.034	42.565	0.085197					37	18	3	0	0	0	0.43198	1	9162	9162		7.0371	0.41363	1	518540			50103	1130	28633	28634	61179	61179					0.1202839005959504
TVIRQRYLNLF	11	Unmodified	_TVIRQRYLNLF_					0	0	0		ENSG00000079313|ENST00000170168|REXO1	ENSG00000079313|ENST00000170168|REXO1	ENSG00000079313|ENST00000170168|REXO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.9454040527344	3	474.945383	1421.81432	0.35495	0.00016858	-0.058867	-2.7958E-05	0.29608	0.00014062	474.94531830040023	42.151	0.49045	42.242	42.037	42.527	0.091362					39	16	4	0	0	0	0.43198	1	9151	9151		7.0371	0.80273	1	554680			50104	1130	28633	28634	61180	61180					0.1202839005959504
TVIRQRYLNLF	11	Unmodified	_TVIRQRYLNLF_					0	0	0		ENSG00000079313|ENST00000170168|REXO1	ENSG00000079313|ENST00000170168|REXO1	ENSG00000079313|ENST00000170168|REXO1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	474.945383	1421.81432	-0.14829	-7.0427E-05	0.30111	0.00014301	0.15282	7.2583E-05	475.2798409766901	42.561	0.48531	42.561	42.33	42.816	0	0.19776	0.00031798	NaN	7.0371	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	522270			50105	1130	28633	28634							0.1202839005959504
TVIRTSPS	8	Unmodified	_TVIRTSPS_					0	0	0		ENSG00000111087|ENST00000228682|GLI1;nc|ENSG00000111087|P08151-2|GLI1	ENSG00000111087|ENST00000228682|GLI1	ENSG00000111087|ENST00000228682|GLI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.2353210449219	2	430.745442	859.476331	-0.24212	-0.00010429	0.22899	9.8636E-05	-0.013128	-5.6548E-06	430.7455817278656	17.506	0.4829	17.389	17.18	17.663	-0.11739					29	16	3	0	0	0	0.34247	1	1715	1715		8.5933	0	1	79272			50106	2348	28634	28635	61181	61181					0.04097211863393113
TVIRTSPS	8	Unmodified	_TVIRTSPS_					0	0	0		ENSG00000111087|ENST00000228682|GLI1;nc|ENSG00000111087|P08151-2|GLI1	ENSG00000111087|ENST00000228682|GLI1	ENSG00000111087|ENST00000228682|GLI1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	430.745442	859.476331	-0.076655	-3.3019E-05	0.45053	0.00019407	0.37388	0.00016105	430.7456684885032	17.421	0.43854	17.36	17.211	17.65	-0.060431	0.016309	6.5071E-05	NaN	4.756	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94795			50107	2348	28634	28635							0.04097211863393113
TVISAVGTIVK	11	Unmodified	_TVISAVGTIVK_					0	0	0		ENST00000583329.5_1_17:73699767-73702598:+|nuORF;ENST00000578756.5_1_17:73699860-73702598:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP;ENST00000579005.1_1_17:73702284-73702598:+|nuORF;ENST00000584557.1_1_17:73702349-73702598:+|nuORF;ENST00000580322.5_1_17:73702024-73702598:+|nuORF;ENST00000293208.13_1_17:73701692-73702598:+|nuORF	ENST00000583329.5_1_17:73699767-73702598:+|nuORF	ENST00000583329.5_1_17:73699767-73702598:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.3399658203125	2	544.339707	1086.66486	0.42481	0.00023124	-0.051422	-2.7991E-05	0.37339	0.00020325	544.3395388616204	51.912	0.68066	51.912	51.702	52.382	0					72	24	4	0	0	0	9.0647E-06	1	12128	12128		125.18	69.678	1	1955100			50108	5515	28635	28636	61182	61182					0.1249944471701383
TVISAVGTIVK	11	Unmodified	_TVISAVGTIVK_					0	0	0		ENST00000583329.5_1_17:73699767-73702598:+|nuORF;ENST00000578756.5_1_17:73699860-73702598:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP;ENST00000579005.1_1_17:73702284-73702598:+|nuORF;ENST00000584557.1_1_17:73702349-73702598:+|nuORF;ENST00000580322.5_1_17:73702024-73702598:+|nuORF;ENST00000293208.13_1_17:73701692-73702598:+|nuORF	ENST00000583329.5_1_17:73699767-73702598:+|nuORF	ENST00000583329.5_1_17:73699767-73702598:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3399047851562	2	544.339707	1086.66486	0.61365	0.00033403	-0.40753	-0.00022184	0.20611	0.0001122	544.339392873	51.869	0.68645	51.92	51.676	52.363	0.050571					72	24	4	0	0	0	0.00041909	1	12129	12129		115.06	67.465	1	2092400			50109	5515	28635	28636	61183	61183					0.1249944471701383
TVISAVGTIVK	11	Unmodified	_TVISAVGTIVK_					0	0	0		ENST00000583329.5_1_17:73699767-73702598:+|nuORF;ENST00000578756.5_1_17:73699860-73702598:+|nuORF;ENST00000580601.5_1_17:73689468-73702598:+|nuORF;nc|ENSG00000161526|Q9UHR5-2|SAP30BP;ENSG00000161526|ENST00000584667|SAP30BP;ENST00000579005.1_1_17:73702284-73702598:+|nuORF;ENST00000584557.1_1_17:73702349-73702598:+|nuORF;ENST00000580322.5_1_17:73702024-73702598:+|nuORF;ENST00000293208.13_1_17:73701692-73702598:+|nuORF	ENST00000583329.5_1_17:73699767-73702598:+|nuORF	ENST00000583329.5_1_17:73699767-73702598:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3400268554688	2	544.339707	1086.66486	0.39271	0.00021377	-0.073751	-4.0145E-05	0.31896	0.00017362	544.3395185221166	52.002	0.78532	52.001	51.71	52.495	-0.00080872					77	28	4	0	0	0	9.0647E-06	1	12141	12141		125.18	75.627	1	2082800			50110	5515	28635	28636	61184	61184					0.1249944471701383
TVITTRRPT	9	Unmodified	_TVITTRRPT_					0	0	0		ENST00000585403.5_1_17:40719643-40721531:+|nuORF	ENST00000585403.5_1_17:40719643-40721531:+|nuORF	ENST00000585403.5_1_17:40719643-40721531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8116455078125	2	522.811648	1043.60874	0.61325	0.00032061	0.13107	6.8525E-05	0.74432	0.00038914	522.8115432472217	86.166	1.1709	86.157	85.791	86.962	-0.0090027					113	45	4	0	0	0	0.31763	1	22741	22741		6.2058	0	1	1821100			50111	12103	28636	28637	61185	61185					0.08868236600187629
TVKAILTL	8	Unmodified	_TVKAILTL_					0	0	0			REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.25048828125	2	429.786579	857.558604	-0.070566	-3.0328E-05	-0.40358	-0.00017345	-0.47414	-0.00020378	429.7863863531977	49.707	0.44101	49.752	49.566	50.007	0.044888					25	16	2	0	0	0	0.32435	1	11542	11542		16.942	4.4107	1	246570	+		50112	15829	28637	28638	61186	61186					0.12412733942323939
TVKEITGLS	9	Unmodified	_TVKEITGLS_					0	0	0		nc|ENSG00000146648|P00533-2|EGFR	nc|ENSG00000146648|P00533-2|EGFR	nc|ENSG00000146648|P00533-2|EGFR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.75048828125	2	474.274032	946.533512	0.028772	1.3646E-05	1.8098	0.00085833	1.8386	0.00087198	474.2748697851694	24.116	0.56559	24.116	23.829	24.395	0					32	19	2	0	0	0	0.2451	1	3594	3594		15.847	1.0089	1	77552			50113	12745	28638	28639	61187	61187					0.058106343490862855
TVKHVPAF	8	Unmodified	_TVKHVPAF_					0	0	0			REV__nc|ENSG00000130779|P30622-2|CLIP1	REV__nc|ENSG00000130779|P30622-2|CLIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7803955078125	2	449.760895	897.507237	-0.78827	-0.00035453	-2.2302	-0.001003	-3.0184	-0.0013576	449.7592107922079	34.557	0.30671	34.557	34.418	34.725	0					15	10	2	0	0	0	0.34185	1	6864	6864		10.183	0.83596	1	57405	+		50114	15476	28639	28640	61188	61188					0.05438409968269298
TVKMKSTVF	9	Unmodified	_TVKMKSTVF_					0	0	0		AKAP9|p.S915T|1|0.4|ENSG00000127914|chr7:92002660-92002660|T/A|missense_variant	AKAP9|p.S915T|1|0.4|ENSG00000127914|chr7:92002660-92002660|T/A|missense_variant	AKAP9|p.S915T|1|0.4|ENSG00000127914|chr7:92002660-92002660|T/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2847290039062	2	520.794078	1039.5736	0.5377	0.00028003	0.8339	0.00043429	1.3716	0.00071432	520.7944822893722	79.442	0.75349	79.413	79.079	79.833	-0.028923					47	29	2	0	0	0	0.25314	1	20567	20567		15.847	5.6638	1	163630			50115	25	28640	28641	61189	61189					0.05539857748021859
TVKMKSTVF	9	Unmodified	_TVKMKSTVF_					0	0	0		AKAP9|p.S915T|1|0.4|ENSG00000127914|chr7:92002660-92002660|T/A|missense_variant	AKAP9|p.S915T|1|0.4|ENSG00000127914|chr7:92002660-92002660|T/A|missense_variant	AKAP9|p.S915T|1|0.4|ENSG00000127914|chr7:92002660-92002660|T/A|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	520.794078	1039.5736	0.48403	0.00025208	1.205	0.00062755	1.689	0.00087963	520.794733318926	79.336	0.5752	79.397	79.12	79.695	0.061417	-0.0079523	0.00022095	NaN	15.847	44	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127690			50116	25	28640	28641							0.05539857748021859
TVKPRVRLHFV	11	Unmodified	_TVKPRVRLHFV_					0	0	0		ENST00000520623.5_1_8:27348689-27396319:+|nuORF;nc|ENSG00000120915|P34913-3|EPHX2;nc|ENSG00000120915|P34913-2|EPHX2;ENSG00000120915|ENST00000521400|EPHX2	ENST00000520623.5_1_8:27348689-27396319:+|nuORF	ENST00000520623.5_1_8:27348689-27396319:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7763977050781	3	451.282218	1350.82482	0.47209	0.00021304	1.7928	0.00080907	2.2649	0.0010221	451.2828041281479	58.131	0.65221	58.113	57.953	58.605	-0.0172					30	23	2	0	0	0	0.33064	1	14112	14112		5.0475	0.64137	1	185780			50117	2975	28641	28642	61190	61190					0.16344417504683406
TVKRNRTGP	9	Unmodified	_TVKRNRTGP_					0	0	0			REV__nc|ENSG00000139910|P51513-5|NOVA1	REV__nc|ENSG00000139910|P51513-5|NOVA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.575439453125	2	514.801614	1027.58868	0.059718	3.0743E-05	0.2983	0.00015357	0.35802	0.00018431	514.8017093005225	18.898	0.21146	18.781	18.678	18.89	-0.11739					11	7	2	0	0	0	0.26168	1	2048	2048		1.8442	1.8442	1	37656	+		50118	16012	28642	28643	61191	61191					0.0759848566024175
TVKTDVCRM	9	Unmodified	_TVKTDVCRM_					0	0	0		ENST00000296885.7_1_6:88117749-88144792:+|nuORF;ENSG00000272514|ENST00000369562|CFAP206;ENST00000489338.6_1_6:88125312-88173965:+|nuORF	ENST00000296885.7_1_6:88117749-88144792:+|nuORF	ENST00000296885.7_1_6:88117749-88144792:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3123168945312	2	526.764994	1051.51544	0.12269	6.463E-05	-0.52922	-0.00027878	-0.40653	-0.00021414	526.7650260824673	13.552	0.29851	13.484	13.388	13.686	-0.067496					12	10	2	0	0	0	0.25622	1	501	501		7.2892	0	1	26757			50119	8702	28643	28644	61192	61192					-0.008261471689138489
TVKTDVCRM	9	Unmodified	_TVKTDVCRM_					0	0	0		ENST00000296885.7_1_6:88117749-88144792:+|nuORF;ENSG00000272514|ENST00000369562|CFAP206;ENST00000489338.6_1_6:88125312-88173965:+|nuORF	ENST00000296885.7_1_6:88117749-88144792:+|nuORF	ENST00000296885.7_1_6:88117749-88144792:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	526.764994	1051.51544	0.17681	9.3139E-05	-1.1419	-0.00060152	-0.9651	-0.00050838	526.7643465063501	13.464	0.1132	13.464	13.396	13.509	0	-0.01032	-0.00023661	NaN	7.2892	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29221			50120	8702	28643	28644							-0.008261471689138489
TVKTHLLY	8	Unmodified	_TVKTHLLY_					0	0	0			REV__ENST00000368457.2_1_1:154930519-154930597:-|nuORF	REV__ENST00000368457.2_1_1:154930519-154930597:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2974548339844	2	487.78711	973.559667	0.59417	0.00028983	-1.2484	-0.00060896	-0.65425	-0.00031913	487.7869154779118	58.222	0.54032	58.205	57.901	58.442	-0.0172					34	19	2	0	0	0	0.33993	1	14128	14128		16.942	7.3983	1	393920	+		50121	20342	28644	28645	61193	61193					0.07182948311242399
TVKYLNVSF	9	Unmodified	_TVKYLNVSF_					0	0	0			REV__ENSG00000100347|ENST00000350028|SAMM50	REV__ENSG00000100347|ENST00000350028|SAMM50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7976684570312	2	535.797675	1069.5808	0.42061	0.00022536	-0.47943	-0.00025688	-0.058821	-3.1516E-05	535.7973866442312	41.202	0.38309	41.299	41.065	41.448	0.096626					23	13	3	0	0	0	0.18123	1	8864	8864		27.629	7.2143	1	437370	+		50122	14185	28645	28646	61194	61194					0.04878913620086678
TVKYLNVSF	9	Unmodified	_TVKYLNVSF_					0	0	0			REV__ENSG00000100347|ENST00000350028|SAMM50	REV__ENSG00000100347|ENST00000350028|SAMM50	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	535.797675	1069.5808	0.2121	0.00011365	-0.19789	-0.00010603	0.014213	7.6155E-06	535.7976009508204	41.317	0.32349	41.407	41.188	41.511	0.090252	0.054407	0.00021481	NaN	27.629	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	510520	+		50123	14185	28645	28646							0.04878913620086678
TVLAVAAAAPV	11	Unmodified	_TVLAVAAAAPV_					0	0	0		ENST00000339007.3_1_19:18508247-18508385:-|nuORF	ENST00000339007.3_1_19:18508247-18508385:-|nuORF	ENST00000339007.3_1_19:18508247-18508385:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7527770996094	2	491.800217	981.585882	0.50486	0.00024829	-3.515	-0.0017287	-3.0101	-0.0014804	491.7983347693475	45.033	0.9577	45.033	44.436	45.393	0					58	34	3	0	0	0	0.33085	1	9860	9860		6.2058	0	1	261800			50124	9507	28646	28647	61195	61195					0.09435217482689495
TVLAVAAAAPV	11	Unmodified	_TVLAVAAAAPV_					0	0	0		ENST00000339007.3_1_19:18508247-18508385:-|nuORF	ENST00000339007.3_1_19:18508247-18508385:-|nuORF	ENST00000339007.3_1_19:18508247-18508385:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	491.800217	981.585882	0.45565	0.00022409	-1.2368	-0.00060824	-0.78111	-0.00038415	491.79960495248054	44.939	0.53063	45.008	44.867	45.397	0.068573	-0.026011	0.00062181	NaN	13.906	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233050			50125	9507	28646	28647							0.09435217482689495
TVLAVAAAAPV	11	Unmodified	_TVLAVAAAAPV_					0	0	0		ENST00000339007.3_1_19:18508247-18508385:-|nuORF	ENST00000339007.3_1_19:18508247-18508385:-|nuORF	ENST00000339007.3_1_19:18508247-18508385:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.800217	981.585882	0.49505	0.00024347	-2.0015	-0.00098432	-1.5064	-0.00074086	491.79889473701974	44.985	0.78112	45.06	44.531	45.312	0.075047	0.026094	-0.00013036	NaN	13.906	43	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263100			50126	9507	28646	28647							0.09435217482689495
TVLCDLLLL	9	Unmodified	_TVLCDLLLL_					0	0	0		ENST00000572418.1_1_17:3801110-3806945:-|nuORF;ENSG00000108405|ENST00000225538|P2RX1	ENST00000572418.1_1_17:3801110-3806945:-|nuORF	ENST00000572418.1_1_17:3801110-3806945:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7972106933594	2	501.798829	1001.5831	0.50456	0.00025319	-2.5981	-0.0013037	-2.0936	-0.0010506	501.7967715702857	91.932	0.80289	91.932	91.502	92.305	0.00046539					73	52	2	0	0	0	0.17787	1	24467	24467		26.884	0	1	392170			50127	2184	28647	28648	61196	61196					0.08237626033542256
TVLDRLLPF	9	Unmodified	_TVLDRLLPF_					0	0	0			REV__ENST00000392097.4_1_1:169455486-169455657:+|nuORF	REV__ENST00000392097.4_1_1:169455486-169455657:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.29296875	2	537.321317	1072.62808	0.36089	0.00019391	-0.37746	-0.00020282	-0.016572	-8.9047E-06	537.3210348953417	68.144	0.35631	68.219	68.08	68.436	0.07415					20	12	2	0	0	0	0.2322	1	17109	17109		14.838	0	1	147770	+		50128	20590	28648	28649	61197	61197					0.09467192891065679
TVLEEACPLL	10	Unmodified	_TVLEEACPLL_					0	0	0		ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2870483398438	2	544.288825	1086.5631	0.47941	0.00026094	-1.7759	-0.00096658	-1.2964	-0.00070564	544.2879978667818	45.836	1.7513	45.896	44.783	46.534	0.059837					126	62	3	0	0	0	0.2291	1	10129	10129		32.305	0	1	6183400			50129	8650	28649	28650	61198	61198					0.023278303029201197
TVLEPARII	9	Unmodified	_TVLEPARII_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7647399902344	2	506.313492	1010.61243	0.46182	0.00023383	-0.36955	-0.00018711	0.092273	4.6719E-05	506.3133388695985	67.751	0.48427	67.829	67.628	68.112	0.078041					25	16	2	0	0	0	0.24848	1	17104	17104		9.3831	0	1	250430			50130	5186	28650	28651	61199	61199					0.1075490637402936
TVLEYFIKF	9	Unmodified	_TVLEYFIKF_					0	0	0		nc|ENSG00000180776|Q5W0Z9-4|ZDHHC20;nc|ENSG00000180776|Q5W0Z9-3|ZDHHC20;ENSG00000180776|ENST00000400590|ZDHHC20	nc|ENSG00000180776|Q5W0Z9-4|ZDHHC20	nc|ENSG00000180776|Q5W0Z9-4|ZDHHC20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.30615234375	2	580.323525	1158.6325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.807	1	99.807	99.307	100.31	0								0	0	0	0.23091	1	26690	26690		12.532	3.9383	1				50131	7200	28651	28652	61200	61200					0.05952657313991949
TVLFCGAVIMW	11	Unmodified	_TVLFCGAVIMW_					0	0	0			REV__ENSG00000152779|ENST00000371790|SLC16A12	REV__ENSG00000152779|ENST00000371790|SLC16A12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.88018798828125	3	413.880334	1238.61917	-0.028712	-1.1883E-05	-0.28553	-0.00011818	-0.31424	-0.00013006	413.88029509689017	15.476	0.90659	15.411	15.186	16.092	-0.064413					71	30	4	0	0	0	0.44713	1	1084	1084		5.0475	5.0475	1	543240	+		50132	16595	28652	28653	61201	61201					0.009407599387259324
TVLFNLHSRS	10	Unmodified	_TVLFNLHSRS_					0	0	0			REV__ENST00000373316.4_1_X:77381443-77381596:+|nuORF	REV__ENST00000373316.4_1_X:77381443-77381596:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.3272705078125	2	587.32238	1172.63021	0.12239	7.188E-05	-0.34696	-0.00020378	-0.22458	-0.0001319	587.3223576902681	59.671	0.7626	59.671	59.412	60.175	0					60	26	3	0	0	0	0.33594	2	14507	14507;14639		15.248	0	1	2432300	+		50133	20435	28653	28654	61202;61203	61202					0.05079621628897257
TVLGNSTFY	9	Unmodified	_TVLGNSTFY_					0	0	0			REV__ENSG00000197102|ENST00000360184|DYNC1H1	REV__ENSG00000197102|ENST00000360184|DYNC1H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.6343994140625	2	501.250557	1000.48656	0.27718	0.00013894	-3.0866	-0.0015471	-2.8094	-0.0014082	501.2490946991616	94.127	0.20284	94.213	94.127	94.33	0.08667					24	14	2	0	0	0	0.25323	1	25086	25086		10.074	2.1638	1	111130	+		50134	13306	28654	28655	61204	61204					-0.013662252020480992
TVLGPIVLL	9	Unmodified	_TVLGPIVLL_					0	0	0			REV__VWC2L|p.E65Rfs*28|1|0.06|ENSG00000174453|chr2:214414379-214414380|-/C|frameshift_variant	REV__VWC2L|p.E65Rfs*28|1|0.06|ENSG00000174453|chr2:214414379-214414380|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.28369140625	2	462.810054	923.605554	0.064105	2.9669E-05	0.31743	0.00014691	0.38154	0.00017658	462.8101588183481	91.15	0.16418	91.241	91.154	91.318	0.090668					10	9	2	0	0	0	0.25066	1	24159	24159		3.9444	0	1	138620	+		50135	17834	28655	28656	61205	61205					0.14069593493468346
TVLGRETIL	9	Unmodified	_TVLGRETIL_					0	0	0		nc|ENSG00000128052|P35968-2|KDR	nc|ENSG00000128052|P35968-2|KDR	nc|ENSG00000128052|P35968-2|KDR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2906494140625	2	501.303124	1000.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.997	1	77.997	77.497	78.497	0								0	0	0	0.21971	1	20159	20159		16.149	2.2431	1				50136	12693	28656	28657	61206	61206					0.09142315994370165
TVLGRETIL	9	Unmodified	_TVLGRETIL_					0	0	0		nc|ENSG00000128052|P35968-2|KDR	nc|ENSG00000128052|P35968-2|KDR	nc|ENSG00000128052|P35968-2|KDR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.290771484375	2	501.303124	1000.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.986	1	77.955	77.455	78.455	-0.030434								0	0	0	0.2489	1	20139	20139		6.7232	0.51738	1				50137	12693	28656	28657	61207	61207					0.09142315994370165
TVLGRNLSK	9	Unmodified	_TVLGRNLSK_					0	0	0		nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000561014.1_1_15:49531438-49610381:+|nuORF;ENST00000560119.5_1_15:49527865-49611209:+|nuORF	nc|ENSG00000156958|Q01415-2|GALK2	nc|ENSG00000156958|Q01415-2|GALK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.3011169433594	2	494.300916	986.587279	0.46114	0.00022794	0.27587	0.00013636	0.73701	0.0003643	494.3009964772224	86.927	1.3022	87.014	86.554	87.856	0.087097					180	59	4	0	0	0	0.30064	1	22821	22821		8.7454	2.0222	1	7757700			50138	5268	28657	28658	61208	61208					0.09344851571472645
TVLGYFIGR	9	Unmodified	_TVLGYFIGR_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2924194335938	2	513.292559	1024.57057	0.3423	0.0001757	-0.24332	-0.00012489	0.098987	5.0809E-05	513.2922887689168	62.878	1.0856	62.878	62.58	63.665	0					113	39	4	0	0	0	0.00070271	2	15531	15531;15582		126.57	80.545	1	2188500			50139	2058	28658	28659	61209;61210	61209					0.05926350685513171
TVLGYFIGR	9	Unmodified	_TVLGYFIGR_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2922973632812	2	513.292559	1024.57057	0.32108	0.00016481	-0.44283	-0.0002273	-0.12175	-6.2493E-05	513.2922699226888	62.727	0.96667	62.822	62.544	63.511	0.095722					84	34	3	0	0	0	0.00070271	1	15495	15495		126.57	92.164	1	2106500			50140	2058	28658	28659	61211	61211					0.05926350685513171
TVLGYFIGR	9	Unmodified	_TVLGYFIGR_					0	0	0		ENSG00000106105|ENST00000389266|GARS1;ENST00000478124.5_1_7:30634537-30662079:+|nuORF;nc|ENSG00000106105|P41250-2|GARS1	ENSG00000106105|ENST00000389266|GARS1	ENSG00000106105|ENST00000389266|GARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2924194335938	2	513.292559	1024.57057	0.17717	9.0939E-05	-0.11193	-5.7451E-05	0.065242	3.3488E-05	513.2923248390932	62.951	0.88888	62.942	62.57	63.459	-0.0085526					102	32	4	0	0	0	0.0010463	1	15564	15564		122.18	73.833	1	2116200			50141	2058	28658	28659	61212	61212					0.05926350685513171
TVLHHGPAP	9	Unmodified	_TVLHHGPAP_					0	0	0			REV__ENST00000552565.5_1_12:113753225-113756937:-|nuORF	REV__ENST00000552565.5_1_12:113753225-113756937:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.76611328125	2	464.753601	927.49265	0.29468	0.00013695	-0.41412	-0.00019246	-0.11944	-5.551E-05	464.7532460413429	26.858	0.86628	26.846	26.541	27.407	-0.011562					75	30	3	0	0	0	0.29662	1	4567	4567		9.3474	1.4373	1	894100	+		50142	22220	28659	28660	61213	61213					0.026003378201380656
TVLHILLY	8	Unmodified	_TVLHILLY_					0	0	0		ENST00000398316.7_1_13:49705333-49705405:+|nuORF	ENST00000398316.7_1_13:49705333-49705405:+|nuORF	ENST00000398316.7_1_13:49705333-49705405:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80029296875	2	486.299853	970.585153	0.039543	1.923E-05	1.701	0.00082718	1.7405	0.00084641	486.300406994574	117.14	0.061356	117.11	117.07	117.13	-0.024147					6	5	2	0	0	0	0.34437	1	30318	30318		0.69038	0	1	14175			50143	10159	28660	28661	61214	61214					0.09868422833665136
TVLHISRIL	9	Unmodified	_TVLHISRIL_					0	0	0			REV__nc|ENSG00000170471|Q86X10-2|RALGAPB	REV__nc|ENSG00000170471|Q86X10-2|RALGAPB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7846069335938	2	526.334759	1050.65496	0.41675	0.00021935	-0.52282	-0.00027518	-0.10607	-5.5829E-05	526.3344301919071	55.485	0.45709	55.485	55.274	55.732	0					25	16	2	0	0	0	0.25622	1	13328	13328		7.2892	3.3448	1	354600	+		50144	17581	28661	28662	61215	61215					0.13166301502269562
TVLKTKYDK	9	Unmodified	_TVLKTKYDK_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2478637695312	2	548.324057	1094.63356	0.38858	0.00021307	0.13786	7.559E-05	0.52643	0.00028866	548.3240803104391	17.423	0.32675	17.423	17.272	17.598	0					21	11	2	0	0	0	0.25843	1	1641	1641		5.7319	0	1	63560			50145	6792	28662	28663	61216	61216					0.09002871682878322
TVLLICEQV	9	Unmodified	_TVLLICEQV_					0	0	0			REV__nc|ENSG00000116584|Q92974-3|ARHGEF2;REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	REV__nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8105163574219	2	509.286085	1016.55762	0.54884	0.00027951	0.844	0.00042984	1.3928	0.00070935	509.78753583882377	64.478	0.32574	64.478	64.238	64.563	0					20	11	3	0	0	0	0.20167	1	15966	15966		22.736	3.4793	1	95245	+		50146	14927;14426	28663	28664	61217	61217					0.050001515111148365
TVLLQVALL	9	Unmodified	_TVLLQVALL_					0	0	0			REV__ENSG00000235098|ENST00000537107|ANKRD65	REV__ENSG00000235098|ENST00000537107|ANKRD65	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003234863281	2	485.320786	968.627018	0.43357	0.00021042	-0.40618	-0.00019713	0.027393	1.3295E-05	485.3204930661699	72.927	0.66733	72.898	72.542	73.209	-0.029305					37	23	2	0	0	0	0.25066	1	18694	18694		11.64	0	1	103110	+		50147	19147	28664	28665	61218	61218					0.14144978522176643
TVLPAARS	8	Unmodified	_TVLPAARS_					0	0	0			REV__ENSG00000137073|ENST00000379238|UBAP2	REV__ENSG00000137073|ENST00000379238|UBAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5530090332031	2	407.742702	813.470852	0.073044	2.9783E-05	-0.23085	-9.4126E-05	-0.1578	-6.4343E-05	407.74259984778723	16.983	0.54226	16.923	16.756	17.298	-0.060429					25	19	2	0	0	0	0.34353	1	1444	1444		4.756	0	1	84459	+		50148	15843	28665	28666	61219	61219					0.05665533071567097
TVLPLTNGR	9	Unmodified	_TVLPLTNGR_					0	0	0			REV__ENST00000461968.5_1_10:35468072-35495891:+|nuORF	REV__ENST00000461968.5_1_10:35468072-35495891:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.77471923828125	2	485.787641	969.56073	0.10857	5.2742E-05	0.02702	1.3126E-05	0.13559	6.5868E-05	485.7876446883599	19.689	0.80286	19.689	19.183	19.986	0					48	28	2	0	0	0	0.25938	1	2169	2169		4.3292	0	1	75177	+		50149	21229	28666	28667	61220	61220					0.07473162680139467
TVLQSHMLPP	10	Unmodified	_TVLQSHMLPP_					0	0	0		ENST00000496521.2_1_9:18795428-18796577:+|nuORF	ENST00000496521.2_1_9:18795428-18796577:+|nuORF	ENST00000496521.2_1_9:18795428-18796577:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3116455078125	2	561.802434	1121.59032	-0.12108	-6.8023E-05	-3.5388	-0.0019881	-3.6598	-0.0020561	561.7992848731991	13.509	0.35702	13.441	13.329	13.686	-0.067495					28	12	3	0	0	0	0.31986	1	447	447		4.897	0.95262	1	44574			50150	11237	28667	28668	61221	61221					0.0343835863395725
TVLRERRFG	9	Unmodified	_TVLRERRFG_					0	0	0		ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2613525390625	2	567.330539	1132.64652	0.25202	0.00014298	-1.6581	-0.00094069	-1.4061	-0.00079772	567.3295775376324	97.769	0.38804	97.763	97.526	97.914	-0.0068207					91	43	3	0	0	0	0.25202	1	26180	26180		6.7232	0	1	159280			50151	4241	28668	28669	61222	61222					0.08550747585650242
TVLRERRFG	9	Unmodified	_TVLRERRFG_					0	0	0		ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	567.330539	1132.64652	-0.067361	-3.8216E-05	-0.85816	-0.00048686	-0.92552	-0.00052508	567.3297780985405	97.714	0.39099	97.714	97.452	97.843	0	0.021688	0.00023077	NaN	6.7232	69	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142890			50152	4241	28668	28669							0.08550747585650242
TVLRLLID	8	Unmodified	_TVLRLLID_					0	0	0			REV__ENST00000294728.6_1_1:101185471-101186103:+|nuORF	REV__ENST00000294728.6_1_1:101185471-101186103:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2196350097656	2	471.80276	941.590967	-0.091472	-4.3157E-05	0.42728	0.00020159	0.33581	0.00015843	471.80299279403516	19.455	0.30639	19.455	19.267	19.574	0					16	10	2	0	0	0	0.34218	1	2201	2201		9.3474	0	1	30683	+		50153	19773	28669	28670	61223	61223					0.11783521345330428
TVLSIASHQ	9	Unmodified	_TVLSIASHQ_					0	0	0		ENSG00000278870|ENST00000623849|OR51G1	ENSG00000278870|ENST00000623849|OR51G1	ENSG00000278870|ENST00000623849|OR51G1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.281494140625	2	478.263999	954.513445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.509	1	30.537	30.037	31.037	0.027946								0	0	0	0.23367	1	5592	5592		11.64	0	1				50154	8748	28670	28671	61224	61224					0.034368834091424105
TVLTFVYHD	9	Unmodified	_TVLTFVYHD_					0	0	0			REV__NLRP8|p.N923Kfs*2|1|0.22|ENSG00000179709|chr19:55976190-55976191|-/A|frameshift_variant	REV__NLRP8|p.N923Kfs*2|1|0.22|ENSG00000179709|chr19:55976190-55976191|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.3169555664062	2	547.779482	1093.54441	0.32154	0.00017613	0.16333	8.947E-05	0.48487	0.0002656	547.7797008258603	65.084	0.77978	65.084	64.539	65.319	0					38	28	2	0	0	0	0.24688	1	16286	16286		14.838	3.198	1	140260	+		50155	18089	28671	28672	61225	61225					0.0013803672338781325
TVLTHSDEI	9	Unmodified	_TVLTHSDEI_					0	0	0			REV__ENST00000488222.5_1_7:45142883-45145249:-|nuORF	REV__ENST00000488222.5_1_7:45142883-45145249:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2840270996094	2	507.758746	1013.50294	0.28266	0.00014352	-2.1261	-0.0010796	-1.8435	-0.00093604	508.2582501181876	69.243	0.91666	69.309	68.776	69.692	0.066048					43	32	2	0	0	0	0.23784	1	17579	17579		19.257	4.6753	1	367470	+		50156	15802	28672	28673	61226	61226					-0.00327144035964011
TVLTRSKR	8	Unmodified	_TVLTRSKR_					0	0	0		nc|ENSG00000165304|Q14680-3|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK	nc|ENSG00000165304|Q14680-3|MELK	nc|ENSG00000165304|Q14680-3|MELK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.80120849609375	2	480.801083	959.587613	0.41065	0.00019744	-0.02617	-1.2583E-05	0.38448	0.00018486	480.8010393458865	84.963	1.9591	84.963	84.47	86.429	0					241	74	6	0	0	0	0.4419	3	22280	22280;22326;22375		8.5933	0	1	13323000			50157	5948	28673	28674	61227;61228;61229	61227					0.10620271291327299
TVLTRSKR	8	Unmodified	_TVLTRSKR_					0	0	0		nc|ENSG00000165304|Q14680-3|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK	nc|ENSG00000165304|Q14680-3|MELK	nc|ENSG00000165304|Q14680-3|MELK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.8012390136719	2	480.801083	959.587613	0.46042	0.00022137	-0.15054	-7.2379E-05	0.30988	0.00014899	480.80098463877744	84.858	1.8905	84.939	84.422	86.312	0.080879					254	72	6	0	0	0	0.4419	3	22247	22247;22288;22328		8.5933	0	1	12069000			50158	5948	28673	28674	61230;61231;61232	61230					0.10620271291327299
TVLTRSKR	8	Unmodified	_TVLTRSKR_					0	0	0		nc|ENSG00000165304|Q14680-3|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;nc|ENSG00000165304|Q14680-6|MELK;ENSG00000165304|ENST00000298048|MELK	nc|ENSG00000165304|Q14680-3|MELK	nc|ENSG00000165304|Q14680-3|MELK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.80108642578125	2	480.801083	959.587613	0.48179	0.00023164	-0.14265	-6.8588E-05	0.33913	0.00016305	480.80100077167305	84.966	1.74	84.953	84.385	86.125	-0.01284					228	67	6	0	0	0	0.4419	1	22261	22261		8.5933	0	1	15007000			50159	5948	28673	28674	61233	61233					0.10620271291327299
TVLTRSVRS	9	Unmodified	_TVLTRSVRS_					0	0	0			REV__ENST00000528173.5_1_11:46390827-46391010:+|nuORF	REV__ENST00000528173.5_1_11:46390827-46391010:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8041687011719	2	509.803823	1017.59309	0.42826	0.00021833	-0.17311	-8.8252E-05	0.25515	0.00013008	509.8036382599112	74.281	2.861	74.281	72.534	75.395	0					173	101	3	0	0	0	0.29638	1	18730	18730		9.3831	9.3831	1	1842200	+		50160	21983	28674	28675	61234	61234					0.08499950083137264
TVLTTMDEM	9	Unmodified	_TVLTTMDEM_					0	0	0			REV__ENST00000514325.1_1_4:83277653-83277776:-|nuORF	REV__ENST00000514325.1_1_4:83277653-83277776:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7562255859375	2	520.735568	1039.45658	0.41017	0.00021359	0.066792	3.4781E-05	0.47697	0.00024837	520.7357815017333	81.598	1.1131	81.598	80.997	82.11	0					71	25	4	0	0	0	0.21905	1	21271	21271		16.942	5.302	1	621950	+		50161	19924	28675	28676	61235	61235					-0.06156668253902353
TVLVFTVTLK	10	Unmodified	_TVLVFTVTLK_					0	0	0		ENST00000460773.5_1_X:138814597-138879340:-|nuORF;nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C	ENST00000460773.5_1_X:138814597-138879340:-|nuORF	ENST00000460773.5_1_X:138814597-138879340:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.7661743164062	2	560.85245	1119.69035	0.83166	0.00046644	-2.1101	-0.0011835	-1.2785	-0.00071703	560.8512003940034	33.68	0.41973	33.746	33.51	33.93	0.06636					23	14	2	0	0	0	0.30079	1	6513	6513		20.454	6.5476	1	166190			50162	1733	28676	28677	61236	61236					0.13528919239411152
TVLVFTVTLK	10	Unmodified	_TVLVFTVTLK_					0	0	0		ENST00000460773.5_1_X:138814597-138879340:-|nuORF;nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C	ENST00000460773.5_1_X:138814597-138879340:-|nuORF	ENST00000460773.5_1_X:138814597-138879340:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.85245	1119.69035	0.62192	0.00034881	-1.7901	-0.001004	-1.1682	-0.00065519	560.8514504332744	33.811	0.35112	33.811	33.646	33.997	0	0.065051	-0.00023217	NaN	14.838	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128220			50163	1733	28676	28677							0.13528919239411152
TVLVLLASTT	10	Unmodified	_TVLVLLASTT_					0	0	0		ENSG00000184995|ENST00000448696|IFNE	ENSG00000184995|ENST00000448696|IFNE	ENSG00000184995|ENST00000448696|IFNE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8038024902344	2	509.313158	1016.61176	0.36294	0.00018485	-1.8647	-0.00094972	-1.5018	-0.00076487	509.3121684718507	89.192	0.70926	89.191	88.78	89.489	-0.00080872					48	27	2	0	0	0	0.38515	1	23530	23530		6.2058	0	1	168170			50164	7492	28677	28678	61237	61237					0.10412066934327413
TVLVLWRLVP	10	Unmodified	_TVLVLWRLVP_					0	0	0		ENST00000380138.3_1_5:83476291-83680146:-|nuORF	ENST00000380138.3_1_5:83476291-83680146:-|nuORF	ENST00000380138.3_1_5:83476291-83680146:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.382568359375	2	598.381709	1194.74886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.759	1	35.845	35.345	36.345	0.08625								0	0	0	0.37739	1	7187	7187		3.2813	0.28607	1				50165	9980	28678	28679	61238	61238					0.15928020604542326
TVLVLWRLVP	10	Unmodified	_TVLVLWRLVP_					0	0	0		ENST00000380138.3_1_5:83476291-83680146:-|nuORF	ENST00000380138.3_1_5:83476291-83680146:-|nuORF	ENST00000380138.3_1_5:83476291-83680146:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3829345703125	2	598.381709	1194.74886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.961	1	36.047	35.547	36.547	0.08625								0	0	0	0.37739	1	7249	7249		3.2813	0.28607	1				50166	9980	28678	28679	61239	61239					0.15928020604542326
TVLVSRQSF	9	Unmodified	_TVLVSRQSF_					0	0	0			REV__ENSG00000205903|ENST00000382252|ZNF316	REV__ENSG00000205903|ENST00000382252|ZNF316	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.324462890625	2	518.792924	1035.57129	-0.65429	-0.00033944	-0.61149	-0.00031724	-1.2658	-0.00065668	518.7923232598407	35.035	0.63799	35.113	34.78	35.418	0.077377					35	22	2	0	0	0	0.24311	1	7016	7016		16.942	3.0362	1	139030	+		50167	19008	28679	28680	61240	61240					0.05493145334571636
TVLWGVTVV	9	Unmodified	_TVLWGVTVV_					0	0	0			REV__ENST00000493232.5_1_7:2580815-2581753:-|nuORF	REV__ENST00000493232.5_1_7:2580815-2581753:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.8008117675781	2	487.289485	972.564418	0.5109	0.00024895	2.49	0.0012133	3.0009	0.0014623	487.29112695015795	84.018	0.17042	84.002	83.877	84.047	-0.016823					11	8	2	0	0	0	0.25314	1	21992	21992		15.847	1.0089	1	174830	+		50168	21635	28680	28681	61241	61241					0.07703832454001258
TVLYPSQLP	9	Unmodified	_TVLYPSQLP_					0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.810546875	2	509.2844	1016.55425	0.45797	0.00023324	2.5877	0.0013179	3.0457	0.0015511	509.78762214210184	63.726	1.1187	63.718	63.435	64.553	-0.0085564					59	40	3	0	0	0	0.22061	1	15916	15916		24.021	0	1	330600	+		50169	15645	28681	28682	61242	61242					0.04663224728756177
TVLYRLQF	8	Unmodified	_TVLYRLQF_					0	0	0		ENST00000404372.1_1_6:151256177-151256594:+|nuORF;ENSG00000122644|ENST00000651779|ARL4A	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	ENST00000404372.1_1_6:151256177-151256594:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3004150390625	2	520.300384	1038.58622	0.10827	5.6332E-05	-0.57046	-0.00029681	-0.46219	-0.00024048	520.3004328128483	61.446	2.5451	61.436	61.077	63.622	-0.0094566					317	93	9	0	0	0	0.32038	1	15273	15273		28.487	5.7506	1	51092000			50170	3057	28682	28683	61243	61243					0.06846637202556849
TVMDLLLEY	9	Oxidation (M)	_TVM(Oxidation (M))DLLLEY_		TVM(1)DLLLEY		TVM(44)DLLLEY	0	0	1		ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7808837890625	2	556.780833	1111.54711	0.33971	0.00018914	-0.23519	-0.00013095	0.10452	5.8197E-05	556.7807562934399	76.668	0.81235	76.668	76.367	77.179	0					64	29	3	0	0	0	0.07432	1	19789	19789		43.858	9.7559	1	479670			50171	3845	28683	28684	61244	61244		481			-0.004198759339942626
TVMDLLLEY	9	Oxidation (M)	_TVM(Oxidation (M))DLLLEY_		TVM(1)DLLLEY		TVM(55)DLLLEY	0	0	1		ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2680053710938	2	556.780833	1111.54711	0.6767	0.00037677	-0.3471	-0.00019326	0.32959	0.00018351	556.7808793261839	77.672	1.1532	77.672	77.149	78.302	0					82	42	3	0	0	0	0.044952	2	20057	20057;20105		54.774	12.679	1	391240			50172	3845	28683	28684	61245;61246	61245		481			-0.004198759339942626
TVMDLLLEY	9	Oxidation (M)	_TVM(Oxidation (M))DLLLEY_		TVM(1)DLLLEY		TVM(55)DLLLEY	0	0	1		ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7807006835938	2	556.780833	1111.54711	0.18823	0.0001048	-0.29696	-0.00016534	-0.10873	-6.054E-05	556.7807376459849	76.705	0.83411	76.758	76.371	77.206	0.053413					61	29	3	0	0	0	0.044952	1	19759	19759		54.774	12.679	1	433250			50173	3845	28683	28684	61247	61247		481			-0.004198759339942626
TVMDLLLEY	9	Oxidation (M)	_TVM(Oxidation (M))DLLLEY_		TVM(1)DLLLEY		TVM(46)DLLLEY	0	0	1		ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2681884765625	2	556.780833	1111.54711	0.68183	0.00037963	-0.17161	-9.5549E-05	0.51022	0.00028408	556.780823909306	77.663	0.84758	77.719	77.208	78.055	0.05542					69	30	3	0	0	0	0.068501	1	20078	20078		46.021	11.919	1	455820			50174	3845	28683	28684	61248	61248		481			-0.004198759339942626
TVMDLLLEY	9	Oxidation (M)	_TVM(Oxidation (M))DLLLEY_		TVM(1)DLLLEY		TVM(55)DLLLEY	0	0	1		ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7806396484375	2	556.780833	1111.54711	0.45814	0.00025508	-0.45043	-0.00025079	0.0077085	4.2919E-06	556.7806508364989	76.73	0.73346	76.698	76.452	77.186	-0.031479					62	26	3	0	0	0	0.044952	1	19771	19771		54.774	12.679	1	506980			50175	3845	28683	28684	61249	61249		481			-0.004198759339942626
TVMDLLLEY	9	Oxidation (M)	_TVM(Oxidation (M))DLLLEY_		TVM(1)DLLLEY		TVM(55)DLLLEY	0	0	1		ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	ENSG00000135114|ENST00000257570|OASL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2681884765625	2	556.780833	1111.54711	0.72423	0.00040324	-0.15421	-8.5863E-05	0.57002	0.00031738	556.780778259443	77.711	1.1497	77.679	77.125	78.275	-0.031334					74	41	3	0	0	0	0.044952	2	20098	20048;20098		54.774	12.679	1	467460			50176	3845	28683	28684	61250;61251	61251		481			-0.004198759339942626
TVMELVKI	8	Unmodified	_TVMELVKI_					0	0	0		ENST00000522558.1_1_8:71553109-71556351:-|nuORF;ENSG00000147592|ENST00000276590|LACTB2	ENST00000522558.1_1_8:71553109-71556351:-|nuORF	ENST00000522558.1_1_8:71553109-71556351:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.23748779296875	2	466.777896	931.54124	0.34403	0.00016059	1.4726	0.00068737	1.8166	0.00084795	466.7781965250413	54.031	0.16366	54.015	53.949	54.113	-0.015923					6	5	2	0	0	0	0.30241	1	12780	12780		25.399	14.575	1	42691			50177	4774	28684	28685	61252	61252					0.07273070345024735
TVMELVKIIYK	11	Oxidation (M)	_TVM(Oxidation (M))ELVKIIYK_		TVM(1)ELVKIIYK		TVM(150)ELVKIIYK	0	0	1		ENST00000522558.1_1_8:71553109-71556351:-|nuORF;ENSG00000147592|ENST00000276590|LACTB2	ENST00000522558.1_1_8:71553109-71556351:-|nuORF	ENST00000522558.1_1_8:71553109-71556351:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.60028076171875	3	451.600113	1351.77851	0.73392	0.00033144	-0.47749	-0.00021564	0.25643	0.0001158	451.59989177760514	56.297	2.0431	56.278	55.671	57.714	-0.019077					241	74	4	0	0	0	7.1646E-09	8	13493	13397;13445;13493;13535;13592;13644;13694;13746		147.42	138.18	1	7849800			50178	4774	28685	28686	61253;61254;61255;61256;61257;61258;61259;61260	61255		594			0.11669171767744047
TVMELVKIIYK	11	Oxidation (M)	_TVM(Oxidation (M))ELVKIIYK_					0	0	1		ENST00000522558.1_1_8:71553109-71556351:-|nuORF;ENSG00000147592|ENST00000276590|LACTB2	ENST00000522558.1_1_8:71553109-71556351:-|nuORF	ENST00000522558.1_1_8:71553109-71556351:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	451.600113	1351.77851	0.65672	0.00029658	-0.48674	-0.00021981	0.16998	7.6764E-05	451.59986030627715	56.139	2.8744	56.139	55.594	58.468	0	-0.043	-8.9334E-05	NaN	147.42	285	104	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6160200			50179	4774	28685	28686				594			0.11669171767744047
TVMELVKIIYK	11	Oxidation (M)	_TVM(Oxidation (M))ELVKIIYK_					0	0	1		ENST00000522558.1_1_8:71553109-71556351:-|nuORF;ENSG00000147592|ENST00000276590|LACTB2	ENST00000522558.1_1_8:71553109-71556351:-|nuORF	ENST00000522558.1_1_8:71553109-71556351:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	451.600113	1351.77851	0.58476	0.00026408	-0.34823	-0.00015726	0.23653	0.00010682	451.59990158556263	56.058	3.1271	56.129	55.592	58.719	0.070889	-0.053102	9.8317E-05	NaN	147.42	321	114	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6676200			50180	4774	28685	28686				594			0.11669171767744047
TVMIIVAISP	10	Unmodified	_TVMIIVAISP_					0	0	0		nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2;nc|ENSG00000056972|O43734-3|TRAF3IP2	nc|ENSG00000056972|O43734-5|TRAF3IP2	nc|ENSG00000056972|O43734-5|TRAF3IP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.3287353515625	2	522.312103	1042.60965	0.48554	0.0002536	0.14775	7.717E-05	0.63328	0.00033077	522.3125948093957	89.223	0.50249	89.314	89.073	89.576	0.090561					43	26	2	0	0	0	0.31889	1	23521	23521		6.2058	1.4498	1	159910			50181	715	28686	28687	61261	61261					0.0900531492486607
TVMKEELEKR	10	Unmodified	_TVMKEELEKR_					0	0	0			REV__MYH2|p.D1767Mfs*4|1|0.19|ENSG00000125414|chr17:10523762-10523762|A/-|frameshift_variant;REV__ENSG00000109061|ENST00000226207|MYH1	REV__MYH2|p.D1767Mfs*4|1|0.19|ENSG00000125414|chr17:10523762-10523762|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5640869140625	3	421.56395	1261.67002	0.095336	4.019E-05	0.12124	5.1112E-05	0.21658	9.1302E-05	421.56407262858266	23.554	0.54477	23.515	23.364	23.909	-0.038927					38	18	3	0	0	0	0.37007	1	3505	3505		8.9762	0	1	134670	+		50182	15265;14623	28687	28688	61262	61262					0.049653805172965804
TVMKEELEKR	10	Unmodified	_TVMKEELEKR_					0	0	0			REV__MYH2|p.D1767Mfs*4|1|0.19|ENSG00000125414|chr17:10523762-10523762|A/-|frameshift_variant;REV__ENSG00000109061|ENST00000226207|MYH1	REV__MYH2|p.D1767Mfs*4|1|0.19|ENSG00000125414|chr17:10523762-10523762|A/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	421.56395	1261.67002	0.095336	4.019E-05	0.12124	5.1112E-05	0.21658	9.1302E-05	421.56407262858266	23.554	0.54477	23.515	23.364	23.909	-0.038927	0.029099	-0.00034473	NaN	8.9762	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134670	+		50183	15265;14623	28687	28688							0.049653805172965804
TVMKILEKP	9	Unmodified	_TVMKILEKP_					0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3038330078125	2	529.817553	1057.62055	0.61493	0.0003258	-0.568	-0.00030094	0.04693	2.4864E-05	529.81712709049	40.351	0.41187	40.451	40.368	40.78	0.099407					16	14	2	0	0	0	0.24913	1	8632	8632		1.8442	0	1	85451	+		50184	16557	28688	28689	61263	61263					0.09404717299162257
TVMQLRNEL	9	Oxidation (M)	_TVM(Oxidation (M))QLRNEL_		TVM(1)QLRNEL		TVM(71)QLRNEL	0	0	1		nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2;nc|ENSG00000166833|Q8IVL1-7|NAV2	nc|ENSG00000166833|Q8IVL1-10|NAV2	nc|ENSG00000166833|Q8IVL1-10|NAV2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.294921875	2	560.294973	1118.57539	0.18576	0.00010408	-0.33186	-0.00018594	-0.14609	-8.1856E-05	560.2948092264002	38.264	1.0044	38.264	37.926	38.931	0					66	35	3	0	0	0	0.045138	1	7957	7957		70.929	26.947	1	505860			50185	12820	28689	28690	61264	61264		982			0.020848667659493003
TVMQLRNEL	9	Oxidation (M)	_TVM(Oxidation (M))QLRNEL_		TVM(1)QLRNEL		TVM(59)QLRNEL	0	0	1		nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2;nc|ENSG00000166833|Q8IVL1-7|NAV2	nc|ENSG00000166833|Q8IVL1-10|NAV2	nc|ENSG00000166833|Q8IVL1-10|NAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.2948608398438	2	560.294973	1118.57539	0.4063	0.00022765	-0.85048	-0.00047652	-0.44418	-0.00024887	560.294488343264	38.169	1.1149	38.26	37.772	38.887	0.090881					76	40	3	0	0	0	0.033439	1	7967	7967		59.052	27.784	1	511030			50186	12820	28689	28690	61265	61265		982			0.020848667659493003
TVMQLRNEL	9	Oxidation (M)	_TVM(Oxidation (M))QLRNEL_		TVM(1)QLRNEL		TVM(63)QLRNEL	0	0	1		nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-5|NAV2;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2;nc|ENSG00000166833|Q8IVL1-6|NAV2;nc|ENSG00000166833|Q8IVL1-7|NAV2	nc|ENSG00000166833|Q8IVL1-10|NAV2	nc|ENSG00000166833|Q8IVL1-10|NAV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.295166015625	2	560.294973	1118.57539	0.22965	0.00012867	-0.34629	-0.00019402	-0.11663	-6.5349E-05	560.2948584600484	38.057	0.94062	38.155	37.927	38.867	0.097527					62	33	3	0	0	0	0.023171	1	7917	7917		62.869	27.937	1	425330			50187	12820	28689	28690	61266	61266		982			0.020848667659493003
TVMTMTAMYYK	11	Unmodified	_TVMTMTAMYYK_					0	0	0			REV__ENSG00000129749|ENST00000250699|CHRNA10	REV__ENSG00000129749|ENST00000250699|CHRNA10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.2539367675781	3	447.20801	1338.6022	0.41539	0.00018576	2.277	0.0010183	2.6924	0.0012041	447.2092572965009	32.017	0.44758	32.059	31.909	32.357	0.042366					21	15	2	0	0	0	0.30782	1	6084	6084		12.228	0.59622	1	277410	+		50188	15430	28690	28691	61267	61267					-0.05355528729364778
TVMTMTAMYYK	11	Unmodified	_TVMTMTAMYYK_					0	0	0			REV__ENSG00000129749|ENST00000250699|CHRNA10	REV__ENSG00000129749|ENST00000250699|CHRNA10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.2538757324219	3	447.20801	1338.6022	0.29587	0.00013231	2.6298	0.0011761	2.9257	0.0013084	447.20927837781636	32.017	0.37395	32.058	31.949	32.323	0.040989					21	12	2	0	0	0	0.30782	1	6085	6085		16.275	4.6432	1	218850	+		50189	15430	28690	28691	61268	61268					-0.05355528729364778
TVNEIVLKV	9	Unmodified	_TVNEIVLKV_					0	0	0		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.8135070800781	2	507.813325	1013.6121	0.090064	4.5736E-05	0.11288	5.7324E-05	0.20295	0.00010306	507.8132734448262	52.176	1.0372	52.175	51.602	52.639	-0.00081253					96	37	5	0	0	0	0.038291	1	12263	12263		57.249	20.743	1	1202000			50190	2882	28691	28692	61269	61269					0.10583486654184071
TVNGSELHIED	11	Unmodified	_TVNGSELHIED_					0	0	0			REV__nc|ENSG00000127603|O94854-4|MACF1	REV__nc|ENSG00000127603|O94854-4|MACF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.5667724609375	3	405.194692	1212.56225	-0.057956	-2.3484E-05	3.85	0.00156	3.792	0.0015365	405.1955137852358	29.886	0.25804	29.899	29.774	30.032	0.012266					17	8	3	0	0	0	0.32996	1	5381	5381		4.1166	0.52957	1	38314	+		50191	22984	28692	28693	61270	61270					-0.03553292812443942
TVNLQTDLQ	9	Unmodified	_TVNLQTDLQ_					0	0	0			REV__ENST00000589493.1_1_17:40967924-40970674:-|nuORF	REV__ENST00000589493.1_1_17:40967924-40970674:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2904663085938	2	516.272021	1030.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.936	1	29.948	29.448	30.448	0.012266								0	0	0	0.13597	1	5418	5418		37.974	0	1		+		50192	15315	28693	28694	61271	61271					0.01544544855391905
TVNPPAPY	8	Unmodified	_TVNPPAPY_					0	0	0			REV__nc|ENSG00000283703|P0DP72|VSIG10L2	REV__nc|ENSG00000283703|P0DP72|VSIG10L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.2382507324219	2	429.721436	857.428318	0.0062587	2.6895E-06	-0.078051	-3.354E-05	-0.071793	-3.0851E-05	429.7212845268539	37.703	0.76468	37.794	37.555	38.32	0.090881					54	27	3	0	0	0	0.3366	1	7875	7875		18.135	1.1927	1	457240	+		50193	19370	28694	28695	61272	61272					-0.006098620566717727
TVNPQFVQK	9	Unmodified	_TVNPQFVQK_					0	0	0		ENSG00000141030|ENST00000268717|COPS3;nc|ENSG00000141030|Q9UNS2-2|COPS3;ENST00000486032.1_1_17:17150414-17150880:-|nuORF	ENSG00000141030|ENST00000268717|COPS3	ENSG00000141030|ENST00000268717|COPS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7930908203125	2	530.792924	1059.57129	0.59967	0.0003183	-0.26635	-0.00014138	0.33331	0.00017692	530.7927168119045	30.114	0.87382	30.114	29.801	30.674	0					67	30	3	0	0	0	0.19686	1	5504	5504		31.268	11.829	1	755390			50194	4354	28695	28696	61273	61273					0.04389145334562272
TVNPQFVQK	9	Unmodified	_TVNPQFVQK_					0	0	0		ENSG00000141030|ENST00000268717|COPS3;nc|ENSG00000141030|Q9UNS2-2|COPS3;ENST00000486032.1_1_17:17150414-17150880:-|nuORF	ENSG00000141030|ENST00000268717|COPS3	ENSG00000141030|ENST00000268717|COPS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.792724609375	2	530.792924	1059.57129	0.44945	0.00023857	-0.32055	-0.00017015	0.1289	6.8419E-05	530.7927514224308	30.119	0.73627	30.147	29.873	30.61	0.027948					57	25	3	0	0	0	0.018449	1	5476	5476		66.457	18.708	1	742240			50195	4354	28695	28696	61274	61274					0.04389145334562272
TVNPQFVQK	9	Unmodified	_TVNPQFVQK_					0	0	0		ENSG00000141030|ENST00000268717|COPS3;nc|ENSG00000141030|Q9UNS2-2|COPS3;ENST00000486032.1_1_17:17150414-17150880:-|nuORF	ENSG00000141030|ENST00000268717|COPS3	ENSG00000141030|ENST00000268717|COPS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3211059570312	2	530.792924	1059.57129	0.1854	9.8408E-05	0.058715	3.1166E-05	0.24411	0.00012957	530.7928897252657	30.073	0.89544	30.1	29.838	30.733	0.027157					65	30	3	0	0	0	0.23784	1	5519	5519		19.257	4.4187	1	797520			50196	4354	28695	28696	61275	61275					0.04389145334562272
TVNQTREV	8	Unmodified	_TVNQTREV_					0	0	0			REV__nc|ENSG00000173826|Q9H252-3|KCNH6	REV__nc|ENSG00000173826|Q9H252-3|KCNH6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2749938964844	2	473.751256	945.487959	-0.035026	-1.6594E-05	-0.35204	-0.00016678	-0.38707	-0.00018337	473.75097587889644	25.676	0.27701	25.654	25.47	25.747	-0.022238					11	9	2	0	0	0	0.34367	1	4111	4111		4.3292	0.73274	1	33935	+		50197	17807	28696	28697	61276	61276					0.013034088867129867
TVNSKALEI	9	Unmodified	_TVNSKALEI_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.77923583984375	2	487.779482	973.544411	0.68144	0.00033239	-1.4271	-0.00069613	-0.74571	-0.00036374	487.7790547668401	37.351	1.051	37.351	37.013	38.064	0					77	37	4	0	0	0	0.0010993	2	7659	7659;7703		121.5	49.951	1	3049400			50198	5596	28697	28698	61277;61278	61277					0.05658036723355053
TVNSKALEI	9	Unmodified	_TVNSKALEI_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7791442871094	2	487.779482	973.544411	0.34751	0.00016951	-1.1383	-0.00055523	-0.79076	-0.00038572	487.77919061031326	37.236	1.1734	37.323	36.95	38.124	0.08741					86	42	4	0	0	0	0.0013864	2	7630	7630;7680		117.84	47.489	1	2942800			50199	5596	28697	28698	61279;61280	61279					0.05658036723355053
TVNSKALEI	9	Unmodified	_TVNSKALEI_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7795104980469	2	487.779482	973.544411	0.43765	0.00021347	-1.0535	-0.00051388	-0.61586	-0.0003004	487.7791882056425	37.183	1.0797	37.276	36.98	38.06	0.093014					78	39	4	0	0	0	0.0010993	2	7658	7610;7658		121.5	44.679	1	3086600			50200	5596	28697	28698	61281;61282	61282					0.05658036723355053
TVNSPAIYK	9	Unmodified	_TVNSPAIYK_					0	0	0		ENST00000488453.1_1_1:38483328-38489297:+|nuORF;ENSG00000183520|ENST00000373014|UTP11	ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENST00000488453.1_1_1:38483328-38489297:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7742919921875	2	496.7742	991.533846	0.58529	0.00029076	0.050301	2.4988E-05	0.63559	0.00031574	496.7741913705137	29.512	0.54988	29.512	29.169	29.718	0					49	19	4	0	0	0	0.026579	2	5281	5281;5325		61.602	33.973	1	484270			50201	7373	28698	28699	61283;61284	61283					0.037740540689469526
TVNSPAIYK	9	Unmodified	_TVNSPAIYK_					0	0	0		ENST00000488453.1_1_1:38483328-38489297:+|nuORF;ENSG00000183520|ENST00000373014|UTP11	ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENST00000488453.1_1_1:38483328-38489297:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.77435302734375	2	496.7742	991.533846	0.42544	0.00021135	0.34419	0.00017098	0.76963	0.00038233	496.7742437313439	29.422	0.51917	29.434	29.134	29.654	0.012266					46	17	3	0	0	0	0.11018	1	5252	5252		45.74	18.111	1	505150			50202	7373	28698	28699	61285	61285					0.037740540689469526
TVNSPAIYK	9	Unmodified	_TVNSPAIYK_					0	0	0		ENST00000488453.1_1_1:38483328-38489297:+|nuORF;ENSG00000183520|ENST00000373014|UTP11	ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENST00000488453.1_1_1:38483328-38489297:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7742614746094	2	496.7742	991.533846	0.16615	8.2537E-05	0.51478	0.00025573	0.68092	0.00033826	496.7743606963388	29.469	0.51846	29.482	29.166	29.684	0.013475					43	17	3	0	0	0	0.22061	1	5276	5276		24.021	0	1	490340			50203	7373	28698	28699	61286	61286					0.037740540689469526
TVNVFTTK	8	Unmodified	_TVNVFTTK_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.9148254394531	2	455.255643	908.496732	0.16144	7.3497E-05	-0.22152	-0.00010085	-0.060083	-2.7353E-05	455.25546910891484	38.788	0.82524	38.88	38.401	39.226	0.092674					51	29	3	0	0	0	0.31302	1	8122	8122		17.113	0	1	324520	+		50204	18610	28699	28700	61287	61287					0.038823825231816045
TVNVVGFMAAT	11	Unmodified	_TVNVVGFMAAT_					0	0	0			REV__nc|ENSG00000146216|Q5TCY1-2|TTBK1	REV__nc|ENSG00000146216|Q5TCY1-2|TTBK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2704467773438	2	555.286617	1108.55868	0.36082	0.00020036	-0.50638	-0.00028119	-0.14556	-8.0829E-05	555.2862117377291	32.697	0.88184	32.753	32.618	33.499	0.055309					35	31	2	0	0	0	0.36943	1	6380	6380		15.248	0.41021	1	106900	+		50205	16334	28700	28701	61288	61288					0.00874365880008554
TVPAAREEIA	10	Unmodified	_TVPAAREEIA_					0	0	0		nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF;ENST00000481494.2_1_2:210818830-210819139:+|nuORF	nc|ENSG00000144406|Q8N2C7-7|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3111572265625	2	528.787838	1055.56112	0.70233	0.00037138	-0.46419	-0.00024546	0.23813	0.00012592	528.7874469285434	29.271	0.61854	29.271	28.873	29.492	0					55	22	4	0	0	0	0.30555	1	5275	5275		20.415	0	1	444800			50206	4582	28701	28702	61289	61289					0.03556537609347288
TVPALAFH	8	Unmodified	_TVPALAFH_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.6114807128906	2	428.239796	854.465038	0.13347	5.7158E-05	0.080352	3.441E-05	0.21382	9.1568E-05	428.239798224917	44.811	0.29186	44.886	44.78	45.072	0.075047					12	10	2	0	0	0	0.34185	1	9963	9963		10.183	0	1	108860	+		50207	17310	28702	28703	61290	61290					0.03198434559908492
TVPDEFNL	8	Unmodified	_TVPDEFNL_					0	0	0			REV__ENSG00000148331|ENST00000277458|ASB6	REV__ENSG00000148331|ENST00000277458|ASB6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7148742675781	2	467.729458	933.444362	-0.12038	-5.6306E-05	0.12845	6.0081E-05	0.0080705	3.7748E-06	467.72960034407487	18.268	0.43011	18.15	17.957	18.387	-0.11739					23	14	2	0	0	0	0.4419	1	1916	1916		8.5933	0	1	60951	+		50208	16419	28703	28704	61291	61291					-0.025022006104222783
TVPDEFNL	8	Unmodified	_TVPDEFNL_					0	0	0			REV__ENSG00000148331|ENST00000277458|ASB6	REV__ENSG00000148331|ENST00000277458|ASB6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	467.729458	933.444362	-0.12038	-5.6306E-05	0.12845	6.0081E-05	0.0080705	3.7748E-06	467.72960034407487	18.268	0.43011	18.15	17.957	18.387	-0.11739	0.0013426	3.8102E-05	NaN	8.5933	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60951	+		50209	16419	28703	28704							-0.025022006104222783
TVPDPCARWDC	11	Unmodified	_TVPDPCARWDC_					0	0	0		ENST00000591884.2_1_19:19887416-19887605:+|nuORF	ENST00000591884.2_1_19:19887416-19887605:+|nuORF	ENST00000591884.2_1_19:19887416-19887605:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5149230957031	3	421.514602	1261.52198	-0.17457	-7.3582E-05	0.81976	0.00034554	0.64519	0.00027196	421.514933070357	26.267	0.74664	26.267	26.042	26.789	0					43	25	2	0	0	0	0.33149	1	4319	4319		0.36667	0	1	286880			50210	12191	28704	28705	61292	61292					-0.09832254008188102
TVPHFISKN	9	Unmodified	_TVPHFISKN_					0	0	0			REV__ENSG00000205495|ENST00000380370|OR52J3	REV__ENSG00000205495|ENST00000380370|OR52J3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.78759765625	2	521.787641	1041.56073	0.47259	0.00024659	-0.65579	-0.00034218	-0.18321	-9.5594E-05	521.787097952981	23.819	0.77243	23.78	23.534	24.306	-0.038927					40	26	2	0	0	0	0.26612	1	3575	3575		13.906	13.906	1	94593	+		50211	18993	28705	28706	61293	61293					0.04161162680134112
TVPITPEID	9	Unmodified	_TVPITPEID_					0	0	0			REV__nc|ENSG00000107959|Q5JRX3-3|PITRM1	REV__nc|ENSG00000107959|Q5JRX3-3|PITRM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.3240966796875	2	492.76604	983.517527	-0.044531	-2.1943E-05	2.5857	0.0012741	2.5411	0.0012522	492.76532475059804	61.64	0.58163	61.737	61.507	62.089	0.096989					30	20	2	0	0	0	0.24311	1	15216	15216		11.64	2.2929	1	121780	+		50212	14577	28706	28707	61294	61294					0.025109281121785898
TVPLLEVI	8	Unmodified	_TVPLLEVI_					0	0	0		nc|ENSG00000177398|Q5DID0-3|UMODL1;ENSG00000177398|ENST00000408910|UMODL1;nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1	nc|ENSG00000177398|Q5DID0-3|UMODL1	nc|ENSG00000177398|Q5DID0-3|UMODL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.78662109375	2	442.278586	882.54262	-0.038764	-1.7145E-05	0.073547	3.2528E-05	0.034783	1.5384E-05	442.2785328388539	73.63	0.37309	73.63	73.392	73.766	0					23	13	2	0	0	0	0.34046	1	18841	18841		14.582	0	1	187640			50213	6984	28707	28708	61295	61295					0.09665027705432294
TVPLPPLASL	10	Unmodified	_TVPLPPLASL_					0	0	0			REV__ENST00000445498.5_1_10:11936426-11936693:-|nuORF	REV__ENST00000445498.5_1_10:11936426-11936693:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.3194885253906	2	504.310418	1006.60628	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.045	1	81.018	80.518	81.518	-0.026825								0	0	0	0.35216	1	21076	21076		13.906	2.2658	1		+		50214	21075	28708	28709	61296	61296					0.10324388142510088
TVPLRARA	8	Unmodified	_TVPLRARA_					0	0	0			REV__nc|ENSG00000128284|O95236-3|APOL3	REV__nc|ENSG00000128284|O95236-3|APOL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.9004211425781	2	442.277244	882.539935	-0.16247	-7.1857E-05	0.56011	0.00024772	0.39764	0.00017587	442.2773869310216	12.447	0.30861	12.447	12.303	12.612	0					19	9	3	0	0	0	0.34408	1	172	172		2.3027	0	1	49117	+		50215	15368	28709	28710	61297	61297					0.09396617091124426
TVPLRARA	8	Unmodified	_TVPLRARA_					0	0	0			REV__nc|ENSG00000128284|O95236-3|APOL3	REV__nc|ENSG00000128284|O95236-3|APOL3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	442.277244	882.539935	-0.15472	-6.843E-05	0.46964	0.00020771	0.31491	0.00013928	442.2775773732984	12.434	0.2569	12.337	12.206	12.463	-0.096607	-0.054184	-4.588E-05	NaN	2.3027	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55308	+		50216	15368	28709	28710							0.09396617091124426
TVPLRARA	8	Unmodified	_TVPLRARA_					0	0	0			REV__nc|ENSG00000128284|O95236-3|APOL3	REV__nc|ENSG00000128284|O95236-3|APOL3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	442.277244	882.539935	-0.22852	-0.00010107	0.47695	0.00021094	0.24843	0.00010987	442.2775883289701	12.458	0.35369	12.39	12.226	12.579	-0.06806	-0.0011605	-3.9413E-05	NaN	2.3027	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63388	+		50217	15368	28709	28710							0.09396617091124426
TVPNIEIVDK	10	Unmodified	_TVPNIEIVDK_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.2960205078125	2	564.318971	1126.62339	0.32456	0.00018315	-0.46766	-0.00026391	-0.1431	-8.0756E-05	564.3184869283483	42.236	0.37487	42.327	42.124	42.499	0.091362					19	12	2	0	0	0	0.31629	1	9125	9125		10.074	0	1	109430	+		50218	13977	28710	28711	61298	61298					0.0651426395766066
TVPQWART	8	Unmodified	_TVPQWART_					0	0	0			REV__nc|ENSG00000182557|Q6ZMD2-2|SPNS3	REV__nc|ENSG00000182557|Q6ZMD2-2|SPNS3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.777099609375	2	479.758884	957.503215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.092	1	36.178	35.678	36.678	0.08625								0	0	0	0.34229	1	7289	7289		18.135	0	1		+		50219	18202	28711	28712	61299	61299					0.022763204745501753
TVPRFHLPA	9	Unmodified	_TVPRFHLPA_					0	0	0		ENST00000265348.7_1_6:43018856-43019003:-|nuORF	ENST00000265348.7_1_6:43018856-43019003:-|nuORF	ENST00000265348.7_1_6:43018856-43019003:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.769287109375	2	519.298176	1036.5818	0.12488	6.4848E-05	-1.8411	-0.00095608	-1.7162	-0.00089123	519.2975793202969	42.518	0.70257	42.518	42.306	43.008	0					60	25	4	0	0	0	0.24311	1	9382	9382		11.64	5.9084	1	1166300			50220	9046	28712	28713	61300	61300					0.06497172779654647
TVPRFHLPA	9	Unmodified	_TVPRFHLPA_					0	0	0		ENST00000265348.7_1_6:43018856-43019003:-|nuORF	ENST00000265348.7_1_6:43018856-43019003:-|nuORF	ENST00000265348.7_1_6:43018856-43019003:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	519.298176	1036.5818	0.27601	0.00014333	-1.6058	-0.00083391	-1.3298	-0.00069058	519.2973643200935	42.41	0.71278	42.495	42.238	42.951	0.085197	0.02226	8.5321E-05	NaN	11.64	56	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1169200			50221	9046	28712	28713							0.06497172779654647
TVPRFHLPA	9	Unmodified	_TVPRFHLPA_					0	0	0		ENST00000265348.7_1_6:43018856-43019003:-|nuORF	ENST00000265348.7_1_6:43018856-43019003:-|nuORF	ENST00000265348.7_1_6:43018856-43019003:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	519.298176	1036.5818	0.33952	0.00017631	-1.8716	-0.00097193	-1.5321	-0.00079562	519.2973795953394	42.313	0.67597	42.404	42.151	42.827	0.091358	-0.068165	-0.00019071	NaN	11.64	57	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1206700			50222	9046	28712	28713							0.06497172779654647
TVPRVFIGK	9	Unmodified	_TVPRVFIGK_					0	0	0		ENSG00000173221|ENST00000237858|GLRX	ENSG00000173221|ENST00000237858|GLRX	ENSG00000173221|ENST00000237858|GLRX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.30230712890625	2	508.816202	1015.61785	0.27309	0.00013896	-0.16291	-8.2892E-05	0.11018	5.6063E-05	508.81618847733586	43.696	0.24636	43.696	43.602	43.849	0					10	8	2	0	0	0	0.25706	1	9628	9628		6.7232	4.4204	1	133150			50223	6703	28713	28714	61301	61301					0.11066629956508223
TVPSSFYDLCI	11	Unmodified	_TVPSSFYDLCI_					0	0	0			REV__ENSG00000184108|ENST00000332517|TRIML1	REV__ENSG00000184108|ENST00000332517|TRIML1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.54119873046875	3	415.533768	1243.57948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.891	1	31.934	31.434	32.434	0.042364								0	0	0	0.33515	1	6014	6014		6.2344	0	1		+		50224	18301	28714	28715	61302	61302					-0.03257088530972396
TVPTPFSQN	9	Unmodified	_TVPTPFSQN_					0	0	0			REV__RCBTB2|p.Y299F|1|0.3|ENSG00000136161|chr13:48510659-48510659|T/A|missense_variant	REV__RCBTB2|p.Y299F|1|0.3|ENSG00000136161|chr13:48510659-48510659|T/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2870788574219	2	495.748182	989.481811	0.39083	0.00019375	0.12839	6.365E-05	0.51922	0.0002574	495.74835156281785	58.973	0.70018	58.973	58.712	59.412	0					52	24	3	0	0	0	0.21905	1	14305	14305		23.148	8.3102	1	432950	+		50225	23297	28715	28716	61303	61303					-0.013351093448022766
TVPTPFSQN	9	Unmodified	_TVPTPFSQN_					0	0	0			REV__RCBTB2|p.Y299F|1|0.3|ENSG00000136161|chr13:48510659-48510659|T/A|missense_variant	REV__RCBTB2|p.Y299F|1|0.3|ENSG00000136161|chr13:48510659-48510659|T/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.28717041015625	2	495.748182	989.481811	0.44978	0.00022298	0.09689	4.8033E-05	0.54667	0.00027101	495.74822829362085	58.821	0.53024	58.912	58.708	59.238	0.091301					42	18	3	0	0	0	0.21905	1	14267	14267		23.148	7.3012	1	394780	+		50226	23297	28715	28716	61304	61304					-0.013351093448022766
TVPTPFSQN	9	Unmodified	_TVPTPFSQN_					0	0	0			REV__RCBTB2|p.Y299F|1|0.3|ENSG00000136161|chr13:48510659-48510659|T/A|missense_variant	REV__RCBTB2|p.Y299F|1|0.3|ENSG00000136161|chr13:48510659-48510659|T/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.28729248046875	2	495.748182	989.481811	0.44021	0.00021823	0.35024	0.00017363	0.79045	0.00039186	495.7482990228129	58.981	0.56332	58.967	58.746	59.309	-0.014271					44	19	3	0	0	0	0.21905	1	14337	14337		23.148	11.508	1	464150	+		50227	23297	28715	28716	61305	61305					-0.013351093448022766
TVPVFLMIV	9	Unmodified	_TVPVFLMIV_					0	0	0			REV__nc|ENSG00000080815|P49768-3|PSEN1;REV__nc|ENSG00000288674|P49810-2|PSEN2	REV__nc|ENSG00000288674|P49810-2|PSEN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.803955078125	2	509.803914	1017.59328	0.34568	0.00017623	-0.031972	-1.6299E-05	0.31371	0.00015993	509.8038641981164	88.79	1.6177	88.787	88.192	89.809	-0.0028381					150	87	3	0	0	0	0.31038	1	23485	23485		7.2892	7.2892	1	688350	+		50228	13894;16202	28716	28717	61306	61306					0.08518233758775295
TVPVQPSR	8	Unmodified	_TVPVQPSR_					0	0	0			REV__nc|ENSG00000184381|O60733-2|PLA2G6	REV__nc|ENSG00000184381|O60733-2|PLA2G6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.737548828125	2	442.253434	882.492316	0.28418	0.00012568	-1.6403	-0.00072544	-1.3561	-0.00059976	442.2526254943446	21.242	0.49062	21.242	21.026	21.517	0					35	16	3	0	0	0	0.34247	1	2779	2779		8.5933	0	1	76507	+		50229	18316	28717	28718	61307	61307					0.046369181002773985
TVQDLTKG	8	Unmodified	_TVQDLTKG_					0	0	0			REV__ENSG00000102981|ENST00000458121|PARD6A	REV__ENSG00000102981|ENST00000458121|PARD6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8885192871094	2	431.23745	860.460347	-0.20616	-8.8904E-05	0.76203	0.00032862	0.55587	0.00023971	431.23773595654313	29.167	0.83818	29.18	28.907	29.745	0.013474					52	29	3	0	0	0	0.34294	1	5242	5242		7.2892	0	1	297610	+		50230	14345	28718	28719	61308	61308					0.024535056264767263
TVQDPLMELK	10	Oxidation (M)	_TVQDPLM(Oxidation (M))ELK_		TVQDPLM(1)ELK		TVQDPLM(59)ELK	0	0	1		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.31005859375	2	595.310289	1188.60602	0.65469	0.00038974	-0.43139	-0.00025681	0.2233	0.00013293	595.3099402576718	48.402	0.64443	48.402	48.077	48.721	0					36	22	2	0	0	0	0.049822	1	11080	11080		59.052	26.267	1	577370			50231	273	28719	28720	61309	61309		17			0.019266003603434
TVQDPLMELK	10	Oxidation (M)	_TVQDPLM(Oxidation (M))ELK_		TVQDPLM(1)ELK		TVQDPLM(44)ELK	0	0	1		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.3101806640625	2	595.310289	1188.60602	0.85429	0.00050857	-0.77865	-0.00046354	0.075637	4.5027E-05	595.3097556258526	48.396	0.66962	48.444	48.101	48.771	0.04752					49	24	3	0	0	0	0.11678	1	11122	11122		44.392	22.855	1	572750			50232	273	28719	28720	61310	61310		17			0.019266003603434
TVQDPLMELK	10	Oxidation (M)	_TVQDPLM(Oxidation (M))ELK_					0	0	1		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	595.310289	1188.60602	0.6342	0.00037755	-0.38241	-0.00022765	0.2518	0.0001499	595.3099790788668	48.309	0.63411	48.352	48.037	48.672	0.04332	-0.046988	0.00017766	NaN	59.052	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	601640			50233	273	28719	28720				17			0.019266003603434
TVQEHLIEK	9	Unmodified	_TVQEHLIEK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3308715820312	2	548.803488	1095.59242	0.41167	0.00022593	-0.4415	-0.0002423	-0.029833	-1.6372E-05	548.8032084837101	23.746	0.5845	23.673	23.501	24.085	-0.072559					38	19	3	0	0	0	0.25527	1	3513	3513		8.7454	0.58988	1	126380			50234	1211	28720	28721	61311	61311					0.04845110643418593
TVQEHLIEK	9	Unmodified	_TVQEHLIEK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8035888671875	2	548.803488	1095.59242	0.55984	0.00030724	-0.43387	-0.00023811	0.12597	6.913E-05	548.8033113522328	23.802	0.51685	23.764	23.476	23.993	-0.038927					34	17	3	0	0	0	0.077073	1	3551	3551		42.835	10.798	1	117190			50235	1211	28720	28721	61312	61312					0.04845110643418593
TVQEHLIEK	9	Unmodified	_TVQEHLIEK_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	548.803488	1095.59242	0.25382	0.0001393	0.028937	1.5881E-05	0.28276	0.00015518	548.803482696413	23.681	0.43888	23.681	23.448	23.887	0	-0.024961	0.00032763	NaN	42.835	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119090			50236	1211	28720	28721							0.04845110643418593
TVQILLPK	8	Unmodified	_TVQILLPK_					0	0	0		ENST00000204566.6_1_15:65255658-65255769:-|nuORF	ENST00000204566.6_1_15:65255658-65255769:-|nuORF	ENST00000204566.6_1_15:65255658-65255769:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.9026794433594	2	456.299853	910.585153	0.30743	0.00014028	2.8786	0.0013135	3.1861	0.0014538	456.30124745788095	36.079	0.19757	36.161	36.062	36.259	0.082359					10	6	2	0	0	0	0.34039	1	7298	7298		10.824	0	1	105550			50237	8800	28721	28722	61313	61313					0.12628422833643071
TVQKINAYF	9	Unmodified	_TVQKINAYF_					0	0	0		ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.81201171875	2	542.295299	1082.57605	0.087029	4.7195E-05	-0.050936	-2.7622E-05	0.036093	1.9573E-05	542.2951559097579	38.957	0.41684	38.957	38.623	39.04	0					21	14	2	0	0	0	0.24311	1	8088	8088		11.64	0	1	297140			50238	9649	28722	28723	61314	61314					0.03806029477323136
TVQKPFLRL	9	Unmodified	_TVQKPFLRL_					0	0	0		nc|ENSG00000166153|Q8N2C3|DEPDC4;ENSG00000166153|ENST00000550587|DEPDC4	nc|ENSG00000166153|Q8N2C3|DEPDC4	nc|ENSG00000166153|Q8N2C3|DEPDC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8271484375	2	551.342584	1100.67061	0.15397	8.4889E-05	-0.25971	-0.00014319	-0.10575	-5.8303E-05	551.3426595196737	22.793	0.46408	22.793	22.505	22.969	0					27	15	2	0	0	0	0.33276	1	3228	3228		3.9444	0	1	65714			50239	6035	28723	28724	61315	61315					0.12430588019310562
TVQLLVTVL	9	Unmodified	_TVQLLVTVL_					0	0	0		nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000081842|Q9UN73-2|PCDHA6;nc|ENSG00000081842|Q9UN73-3|PCDHA6;ENSG00000081842|ENST00000529310|PCDHA6	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.3057861328125	2	493.318243	984.621933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.442	1	70.442	69.942	70.942	0								0	0	0	0.13597	1	17854	17854		37.974	0	1				50240	8264	28724	28725	61316	61316					0.12900674659545075
TVQLLVTVL	9	Unmodified	_TVQLLVTVL_					0	0	0		nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000081842|Q9UN73-2|PCDHA6;nc|ENSG00000081842|Q9UN73-3|PCDHA6;ENSG00000081842|ENST00000529310|PCDHA6	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8	nc|ENSG00000204962|Q9Y5H6-2|PCDHA8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.30584716796875	2	493.318243	984.621933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.401	1	70.462	69.962	70.962	0.060783								0	0	0	0.16757	1	17834	17834		30.637	0	1				50241	8264	28724	28725	61317	61317					0.12900674659545075
TVQPHIISF	9	Unmodified	_TVQPHIISF_					0	0	0			REV__nc|ENSG00000293412|O75343|GUCY1B2	REV__nc|ENSG00000293412|O75343|GUCY1B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.8096923828125	2	521.290017	1040.56548	0.50875	0.00026521	-0.5177	-0.00026987	-0.0089525	-4.6669E-06	521.2897930387392	64.716	0.39097	64.706	64.471	64.862	-0.0095291					20	13	2	0	0	0	0.22596	1	16087	16087		21.747	7.165	1	111620	+		50242	23261	28725	28726	61318	61318					0.0468204682290434
TVQQLGLKF	9	Unmodified	_TVQQLGLKF_					0	0	0			REV__ENST00000419462.1_1_8:102381113-102381542:+|nuORF	REV__ENST00000419462.1_1_8:102381113-102381542:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3057861328125	2	517.305667	1032.59678	0.3849	0.00019911	-0.12415	-6.4221E-05	0.26076	0.00013489	517.3056223851987	60.425	0.66595	60.425	60.126	60.792	0					59	24	3	0	0	0	0.068501	1	14749	14749		46.021	2.2486	1	1977000	+		50243	20843	28726	28727	61319	61319					0.08178619856994374
TVQRKEKDFQ	10	Unmodified	_TVQRKEKDFQ_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	639.8439331054688	2	639.843676	1277.6728	0.33906	0.00021694	-0.15787	-0.00010101	0.18118	0.00011593	639.8437105149088	91.805	0.4585	91.805	91.597	92.056	0					62	28	3	0	0	0	0.38773	1	24411	24411		5.7319	0	1	400040			50244	6167	28727	28728	61320	61320					0.04506971966452511
TVQRNILDF	9	Unmodified	_TVQRNILDF_					0	0	0		ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3040771484375	2	553.303655	1104.59276	0.13093	7.2442E-05	0.6544	0.00036208	0.78533	0.00043453	553.3040953612506	15.02	0.47456	14.91	14.618	15.093	-0.10981					41	16	3	0	0	0	0.29638	1	945	945		9.3831	0	1	154710			50245	6597	28728	28729	61321	61321					0.04464530363270569
TVQRQWMYL	9	Unmodified	_TVQRQWMYL_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;ENST00000574518.1_1_17:7674005-7689702:+|nuORF	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.22637939453125	3	408.877981	1223.61211	-0.086133	-3.5218E-05	0.010978	4.4887E-06	-0.075155	-3.0729E-05	408.8782168562297	24.459	0.2867	24.42	24.25	24.537	-0.038927					14	9	2	0	0	0	0.26127	1	3778	3778		1.0715	0	1	29844			50246	7418	28729	28730	61322	61322					0.009251633825442696
TVQSRAILF	9	Unmodified	_TVQSRAILF_					0	0	0			REV__ENST00000489369.5_1_9:676972-732786:+|nuORF	REV__ENST00000489369.5_1_9:676972-732786:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7798461914062	2	517.803291	1033.59203	0.36107	0.00018697	0.18898	9.7855E-05	0.55006	0.00028482	517.803365363185	58.947	0.67281	58.933	58.523	59.196	-0.014267					32	23	2	0	0	0	0.1939	1	14360	14360		24.021	2.2739	1	1531500	+		50247	21588	28730	28731	61323	61323					0.07657735714224145
TVQVYIITK	9	Unmodified	_TVQVYIITK_					0	0	0		ENST00000479512.5_1_3:50387244-50387426:-|nuORF;ENST00000487632.5_1_3:50386870-50387426:-|nuORF;ENSG00000114388|ENST00000232501|NPRL2	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7904052734375	2	532.82115	1063.62775	0.27185	0.00014485	-0.43296	-0.00023069	-0.16111	-8.5845E-05	532.820871679639	46.398	0.94218	46.398	46.111	47.053	0					55	33	2	0	0	0	0.0080483	1	10502	10502		80.896	27.492	1	3151900			50248	2562	28731	28732	61324	61324					0.09847773171213703
TVQVYIITK	9	Unmodified	_TVQVYIITK_					0	0	0		ENST00000479512.5_1_3:50387244-50387426:-|nuORF;ENST00000487632.5_1_3:50386870-50387426:-|nuORF;ENSG00000114388|ENST00000232501|NPRL2	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.8209228515625	2	532.82115	1063.62775	0.38858	0.00020704	-0.4083	-0.00021755	-0.019721	-1.0508E-05	532.8209133047011	46.34	0.94537	46.399	46.15	47.096	0.059834					63	34	2	0	0	0	0.0018404	2	10445	10445;10492		112.04	50.439	1	3062300			50249	2562	28731	28732	61325;61326	61325					0.09847773171213703
TVQVYIITK	9	Unmodified	_TVQVYIITK_					0	0	0		ENST00000479512.5_1_3:50387244-50387426:-|nuORF;ENST00000487632.5_1_3:50386870-50387426:-|nuORF;ENSG00000114388|ENST00000232501|NPRL2	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	ENST00000479512.5_1_3:50387244-50387426:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8209838867188	2	532.82115	1063.62775	0.31886	0.00016989	-0.17696	-9.4289E-05	0.1419	7.5605E-05	532.821021973847	46.38	0.97784	46.434	46.06	47.037	0.054375					68	34	3	0	0	0	0.0041134	2	10443	10443;10498		93.448	40.044	1	2632000			50250	2562	28731	28732	61327;61328	61327					0.09847773171213703
TVQYSVAQY	9	Unmodified	_TVQYSVAQY_					0	0	0			REV__ENST00000413474.5_1_3:195711124-195712546:-|nuORF	REV__ENST00000413474.5_1_3:195711124-195712546:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.761474609375	2	529.761289	1057.50803	0.22757	0.00012056	-0.44502	-0.00023576	-0.21745	-0.0001152	529.7613547283114	42.537	0.78106	42.537	42.306	43.087	0					76	28	4	0	0	0	0.16284	1	9259	9259		30.637	1.555	1	1381700	+		50251	20793	28732	28733	61329	61329					-0.018428401733444844
TVQYSVAQY	9	Unmodified	_TVQYSVAQY_					0	0	0			REV__ENST00000413474.5_1_3:195711124-195712546:-|nuORF	REV__ENST00000413474.5_1_3:195711124-195712546:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.7615966796875	2	529.761289	1057.50803	0.38577	0.00020436	-0.052534	-2.7831E-05	0.33323	0.00017653	529.7612951612355	42.292	0.74032	42.378	42.121	42.861	0.085197					60	26	3	0	0	0	0.079752	1	9267	9267		41.84	13.353	1	1281900	+		50252	20793	28732	28733	61330	61330					-0.018428401733444844
TVRADKKVY	9	Unmodified	_TVRADKKVY_					0	0	0		ENST00000552801.6_1_12:112370435-112371703:-|nuORF	ENST00000552801.6_1_12:112370435-112371703:-|nuORF	ENST00000552801.6_1_12:112370435-112371703:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.29931640625	2	540.314023	1078.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.377	1	36.377	35.877	36.877	0								0	0	0	0.22377	1	7384	7384		14.838	2.3067	1				50253	11813	28733	28734	61331	61331					0.07733120742932442
TVRAPDTWNPF	11	Unmodified	_TVRAPDTWNPF_					0	0	0			REV__ENST00000456318.5_2_3:184079592-184080900:+|nuORF	REV__ENST00000456318.5_2_3:184079592-184080900:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.218994140625	3	435.219172	1302.63569	-0.086446	-3.7623E-05	0.21886	9.5251E-05	0.13241	5.7628E-05	435.219158006583	51.779	0.64609	51.779	51.565	52.211	0					63	23	3	0	0	0	0.37764	2	12096	12096;12142		14.171	4.4065	1	1176800	+		50254	21171	28734	28735	61332;61333	61332					-0.003526995793208698
TVRAPDTWNPF	11	Unmodified	_TVRAPDTWNPF_					0	0	0			REV__ENST00000456318.5_2_3:184079592-184080900:+|nuORF	REV__ENST00000456318.5_2_3:184079592-184080900:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2191162109375	3	435.219172	1302.63569	-0.25384	-0.00011048	0.2982	0.00012978	0.044355	1.9304E-05	435.2192638924103	51.995	1.0548	51.994	51.523	52.578	-0.00080872					74	27	3	0	0	0	0.39244	1	12158	12158		12.228	2.4633	1	1066000	+		50255	21171	28734	28735	61334	61334					-0.003526995793208698
TVRAPDTWNPF	11	Unmodified	_TVRAPDTWNPF_					0	0	0			REV__ENST00000456318.5_2_3:184079592-184080900:+|nuORF	REV__ENST00000456318.5_2_3:184079592-184080900:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	435.219172	1302.63569	-0.086446	-3.7623E-05	0.21886	9.5251E-05	0.13241	5.7628E-05	435.219158006583	51.779	0.64609	51.779	51.565	52.211	0	-0.077321	4.7999E-05	NaN	14.171	63	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1176800	+		50256	21171	28734	28735							-0.003526995793208698
TVRDLLGIKHL	11	Unmodified	_TVRDLLGIKHL_					0	0	0			REV__ENST00000582678.5_1_17:61557143-61562826:+|nuORF	REV__ENST00000582678.5_1_17:61557143-61562826:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2044982910156	3	422.262712	1263.76631	-0.27905	-0.00011783	-0.34789	-0.0001469	-0.62695	-0.00026474	422.26251170539956	30.186	0.39645	30.213	30.052	30.448	0.027157					20	13	2	0	0	0	0.33189	1	5460	5460		5.8681	3.9618	1	101660	+		50257	16863	28735	28736	61335	61335					0.14497316139545546
TVRERKPLIN	10	Unmodified	_TVRERKPLIN_					0	0	0			REV__ENST00000312655.8_1_17:57474537-57474684:+|nuORF	REV__ENST00000312655.8_1_17:57474537-57474684:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.250732421875	3	409.250695	1224.73025	-0.24642	-0.00010085	0.084394	3.4538E-05	-0.16202	-6.6309E-05	409.25072828135177	14.792	0.73095	14.727	14.485	15.216	-0.064413					62	25	4	0	0	0	0.40085	1	829	829		3.3196	0	1	296440	+		50258	19913	28736	28737	61336	61336					0.1268785896272675
TVRFSFQLGFL	11	Unmodified	_TVRFSFQLGFL_					0	0	0		ENST00000497043.5_1_X:153056345-153059781:-|nuORF	ENST00000497043.5_1_X:153056345-153059781:-|nuORF	ENST00000497043.5_1_X:153056345-153059781:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2232360839844	3	438.911679	1313.71321	-0.12562	-5.5137E-05	-2.1944	-0.00096317	-2.3201	-0.0010183	438.9108523471001	18.15	0.42479	18.033	17.726	18.151	-0.11739					22	14	2	0	0	0	0.33296	1	1880	1880		2.6312	1.669	1	28312			50259	11243	28737	28738	61337	61337					0.0688993835688052
TVRIAELVES	10	Unmodified	_TVRIAELVES_					0	0	0			REV__ENSG00000099812|ENST00000215582|MISP	REV__ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.81689453125	2	558.816596	1115.61864	0.40963	0.00022891	-0.41626	-0.00023261	-0.0066272	-3.7034E-06	558.8163496495373	19.972	0.73888	19.856	19.514	20.253	-0.11592					75	25	4	0	0	0	0.37133	1	2478	2478		8.7454	0	1	663680	+		50260	14136	28738	28739	61338	61338					0.06545379814906482
TVRKGHIKK	9	Unmodified	_TVRKGHIKK_					0	0	0			REV__ENSG00000204186|ENST00000374423|ZDBF2	REV__ENSG00000204186|ENST00000374423|ZDBF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2998657226562	2	533.845825	1065.6771	0.34888	0.00018625	-0.29626	-0.00015816	0.052621	2.8092E-05	533.8456379411487	24.389	0.55628	24.316	24.055	24.612	-0.072559					37	18	3	0	0	0	0.26145	1	3804	3804		2.0598	2.0598	1	116900	+		50261	18925	28739	28740	61339	61339					0.1468852597070054
TVRKNYRMVL	10	Unmodified	_TVRKNYRMVL_					0	0	0		ENSG00000128655|ENST00000286063|PDE11A;ENST00000497003.5_1_2:178552959-178791632:-|nuORF;nc|ENSG00000128655|Q9HCR9-3|PDE11A;nc|ENSG00000128655|Q9HCR9-2|PDE11A;nc|ENSG00000128655|Q9HCR9-4|PDE11A	ENSG00000128655|ENST00000286063|PDE11A	ENSG00000128655|ENST00000286063|PDE11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.3687133789062	2	640.368807	1278.72306	0.014447	9.2513E-06	-0.33151	-0.00021229	-0.31706	-0.00020304	640.3687091632379	12.303	0.46974	12.303	12.171	12.641	0					36	15	4	0	0	0	0.41701	1	126	126		0.35063	0	1	261230			50262	3385	28740	28741	61340	61340					0.09484803090617788
TVRLYPPH	8	Unmodified	_TVRLYPPH_					0	0	0			REV__ENST00000592811.5_1_19:45973189-45973720:+|nuORF	REV__ENST00000592811.5_1_19:45973189-45973720:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2972106933594	2	491.777077	981.5396	-1.1184	-0.00054999	0.87573	0.00043067	-0.24265	-0.00011933	491.7772435003899	34.906	0.52037	34.981	34.631	35.151	0.075306					27	18	2	0	0	0	0.34185	1	6882	6882		10.183	0	1	125970	+		50263	22576	28741	28742	61341	61341					0.04809197371275786
TVRSPNSPF	9	Unmodified	_TVRSPNSPF_					0	0	0		nc|ENSG00000133083|O15075-4|DCLK1;ENSG00000133083|ENST00000360631|DCLK1	nc|ENSG00000133083|O15075-4|DCLK1	nc|ENSG00000133083|O15075-4|DCLK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.76177978515625	2	502.761623	1003.50869	0.23834	0.00011983	0.23145	0.00011636	0.46979	0.00023619	502.7618653325954	33.247	0.77761	33.247	32.811	33.589	0					52	27	3	0	0	0	0.13296	1	6474	6474		33.445	16.503	1	237080			50264	3692	28742	28743	61342	61342					0.007079992663761914
TVRSPNSPF	9	Unmodified	_TVRSPNSPF_					0	0	0		nc|ENSG00000133083|O15075-4|DCLK1;ENSG00000133083|ENST00000360631|DCLK1	nc|ENSG00000133083|O15075-4|DCLK1	nc|ENSG00000133083|O15075-4|DCLK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	502.761623	1003.50869	0.28614	0.00014386	0.031625	1.59E-05	0.31776	0.00015976	502.76158907692934	33.142	0.79894	33.197	32.814	33.613	0.055309	-0.013867	-0.00012459	NaN	33.445	47	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198250			50265	3692	28742	28743							0.007079992663761914
TVRSPNSPF	9	Unmodified	_TVRSPNSPF_					0	0	0		nc|ENSG00000133083|O15075-4|DCLK1;ENSG00000133083|ENST00000360631|DCLK1	nc|ENSG00000133083|O15075-4|DCLK1	nc|ENSG00000133083|O15075-4|DCLK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	502.761623	1003.50869	0.23098	0.00011613	0.21458	0.00010788	0.44556	0.00022401	502.7618458137322	33.135	0.71738	33.19	32.877	33.594	0.054371	-0.021585	5.9376E-05	NaN	33.445	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322380			50266	3692	28742	28743							0.007079992663761914
TVRSTSKVRK	10	Unmodified	_TVRSTSKVRK_					0	0	0		ENST00000494833.1_1_22:50214627-50216774:-|nuORF;nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1	ENST00000494833.1_1_22:50214627-50216774:-|nuORF	ENST00000494833.1_1_22:50214627-50216774:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7838134765625	2	581.356754	1160.69895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.49	1	101.52	101.02	102.02	0.027206								0	0	0	0.38166	1	27071	27071		1.4819	0	1				50267	1594	28743	28744	61343	61343					0.12503285928596597
TVRYEEGKQK	10	Unmodified	_TVRYEEGKQK_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5725402832031	3	413.222693	1236.64625	-0.14757	-6.0979E-05	-0.69871	-0.00028872	-0.84628	-0.0003497	413.2223568843866	28.19	0.81561	28.191	27.764	28.58	0.0004673					63	28	3	0	0	0	0.31994	1	4981	4981		5.4027	1.81	1	552540	+		50268	13129	28744	28745	61344	61344					0.037392830751286965
TVSADPVVK	9	Unmodified	_TVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.26080322265625	2	458.260925	914.507297	-0.010688	-4.8978E-06	-0.33069	-0.00015154	-0.34138	-0.00015644	458.2606366889052	25.29	0.81058	25.29	24.93	25.741	0					75	27	5	0	0	0	0.018449	1	4026	4026		66.457	20.757	1	1047900			50269	3938	28745	28746	61345	61345					0.04662365177614447
TVSADPVVK	9	Unmodified	_TVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.26092529296875	2	458.260925	914.507297	-0.11579	-5.3063E-05	-0.058451	-2.6786E-05	-0.17424	-7.9849E-05	458.26076907143664	25.345	0.9371	25.29	24.888	25.826	-0.055931					76	32	4	0	0	0	0.018449	1	4040	4040		66.457	20.757	1	1149200			50270	3938	28745	28746	61346	61346					0.04662365177614447
TVSADPVVK	9	Unmodified	_TVSADPVVK_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2607421875	2	458.260925	914.507297	-0.23234	-0.00010647	-0.15034	-6.8895E-05	-0.38269	-0.00017537	458.2606982017935	25.304	0.98265	25.272	24.953	25.936	-0.03141					83	34	4	0	0	0	0.014206	2	4028	3983;4028		72.968	21.338	1	1152200			50271	3938	28745	28746	61347;61348	61348					0.04662365177614447
TVSEVIQGLLK	11	Unmodified	_TVSEVIQGLLK_					0	0	0		nc|ENSG00000266094|Q8WWW0-2|RASSF5;nc|ENSG00000266094|Q8WWW0-3|RASSF5;ENSG00000266094|ENST00000579436|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8560791015625	2	593.855721	1185.69689	0.51896	0.00030819	-0.16641	-9.8821E-05	0.35255	0.00020936	593.8556407711192	68.764	0.99412	68.764	68.491	69.485	0					74	35	3	0	0	0	1.056E-08	2	17317	17317;17364		142.92	87.684	1	805620			50272	8676	28746	28747	61349;61350	61349					0.11146812400124873
TVSEVIQGLLK	11	Unmodified	_TVSEVIQGLLK_					0	0	0		nc|ENSG00000266094|Q8WWW0-2|RASSF5;nc|ENSG00000266094|Q8WWW0-3|RASSF5;ENSG00000266094|ENST00000579436|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.85595703125	2	593.855721	1185.69689	0.49069	0.0002914	-0.24531	-0.00014568	0.24538	0.00014572	593.8555896334868	68.681	0.93774	68.753	68.434	69.372	0.071938					83	34	3	0	0	0	2.1743E-09	2	17296	17296;17346		154.04	106.3	1	924390			50273	8676	28746	28747	61351;61352	61351					0.11146812400124873
TVSEVIQGLLK	11	Unmodified	_TVSEVIQGLLK_					0	0	0		nc|ENSG00000266094|Q8WWW0-2|RASSF5;nc|ENSG00000266094|Q8WWW0-3|RASSF5;ENSG00000266094|ENST00000579436|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	nc|ENSG00000266094|Q8WWW0-2|RASSF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.85595703125	2	593.855721	1185.69689	0.43093	0.00025591	-0.12064	-7.1643E-05	0.31029	0.00018427	593.8556784902144	68.748	0.92265	68.729	68.484	69.407	-0.019157					77	32	3	0	0	0	1.056E-08	3	17320	17320;17368;17439		142.92	87.684	1	703830			50274	8676	28746	28747	61353;61354;61355	61353					0.11146812400124873
TVSFSTHPLL	10	Unmodified	_TVSFSTHPLL_					0	0	0		ENST00000356300.8_1_14:24047776-24047998:-|nuORF	ENST00000356300.8_1_14:24047776-24047998:-|nuORF	ENST00000356300.8_1_14:24047776-24047998:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2646484375	2	551.300581	1100.58661	0.60336	0.00033263	0.73511	0.00040527	1.3385	0.0007379	551.3010012702425	44.418	0.54216	44.486	44.223	44.765	0.068569					33	19	2	0	0	0	0.30079	1	9785	9785		10.074	0	1	577400			50275	9619	28747	28748	61356	61356					0.04034012131774034
TVSFVLSSLA	10	Unmodified	_TVSFVLSSLA_					0	0	0			REV__ENST00000507439.5_1_4:17488646-17488742:-|nuORF	REV__ENST00000507439.5_1_4:17488646-17488742:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.788818359375	2	512.289682	1022.56481	0.35767	0.00018323	0.23611	0.00012096	0.59378	0.00030419	512.2898955569401	54.024	0.64457	54.008	53.525	54.17	-0.015923					33	23	2	0	0	0	0.30586	1	12761	12761		19.257	3.4098	1	303790	+		50276	21759	28748	28749	61357	61357					0.05443207383200388
TVSGKLTVSV	10	Unmodified	_TVSGKLTVSV_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7846374511719	2	495.795132	989.575711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.221	1	45.289	44.789	45.789	0.068569								0	0	0	0.32814	1	10085	10085		24.021	2.2739	1		+		50277	19330	28749	28750	61358	61358					0.0805060975745846
TVSMETSEKSK	11	Unmodified	_TVSMETSEKSK_					0	0	0		nc|ENSG00000110841|Q86W92-3|PPFIBP1;nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-3|PPFIBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2086181640625	3	409.535949	1225.58602	0.11899	4.8732E-05	1.023	0.00041894	1.142	0.00046767	409.8705038706507	29.39	0.75794	29.403	29.218	29.976	0.012266					40	25	2	0	0	0	0.33119	1	5410	5410		2.6312	0	1	155920			50278	2332	28750	28751	61359	61359					-0.017751953702600076
TVSPIPFFNK	10	Unmodified	_TVSPIPFFNK_					0	0	0		nc|ENSG00000116675|O75061-3|DNAJC6;nc|ENSG00000116675|O75061-4|DNAJC6;nc|ENSG00000116675|O75061|DNAJC6;ENSG00000116675|ENST00000371069|DNAJC6	nc|ENSG00000116675|O75061-3|DNAJC6	nc|ENSG00000116675|O75061-3|DNAJC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3182373046875	2	575.318774	1148.623	0.2545	0.00014642	-0.22064	-0.00012694	0.033862	1.9481E-05	575.3186627051982	63.182	0.81464	63.182	62.881	63.695	0					61	29	3	0	0	0	0.19885	1	15637	15637		32.786	2.1491	1	418730			50279	2737	28751	28752	61360	61360					0.054628890284675435
TVSPRKEDPG	10	Unmodified	_TVSPRKEDPG_					0	0	0		ENSG00000169258|ENST00000303991|GPRIN1;nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2349243164062	2	543.28292	1084.55129	0.42693	0.00023194	-0.24731	-0.00013436	0.17962	9.7585E-05	543.2809376660585	19.251	0.81031	19.135	18.919	19.729	-0.11592					69	27	5	0	0	0	0.3156	1	2198	2198		10.824	4.6181	1	249100			50280	6345	28752	28753	61361	61361					0.012393496039294405
TVSPRKEDPG	10	Unmodified	_TVSPRKEDPG_					0	0	0		ENSG00000169258|ENST00000303991|GPRIN1;nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	ENSG00000169258|ENST00000303991|GPRIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2344360351562	2	543.28292	1084.55129	0.43908	0.00023854	-0.19793	-0.00010753	0.24115	0.00013101	543.2808973557359	19.174	0.69238	19.118	18.903	19.595	-0.055693					59	23	5	0	0	0	0.3156	1	2233	2233		10.824	0	1	253270			50281	6345	28752	28753	61362	61362					0.012393496039294405
TVSTRYLHV	9	Unmodified	_TVSTRYLHV_					0	0	0		ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;RBPJ|p.E392Rfs*41|1|0.05|ENSG00000168214|chr4:26430508-26430509|-/A|frameshift_variant;RBPJ|p.E392Afs*42|1|0.05|ENSG00000168214|chr4:26430509-26430510|-/CTAA|frameshift_variant;nc|ENSG00000168214|Q06330-2|RBPJ;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;ENST00000506903.1_1_4:26422193-26426401:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	ENST00000514380.5_1_4:26322378-26431729:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.297119140625	2	538.298373	1074.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.645	1	34.721	34.221	35.221	0.075306								0	0	0	0.17427	1	6854	6854		29.082	3.6823	1				50282	6254	28753	28754	61363	61363					0.04788547708835722
TVSVALHLF	9	Unmodified	_TVSVALHLF_					0	0	0		nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4;nc|ENSG00000022567|Q5BKX6-3|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4	nc|ENSG00000022567|Q5BKX6-2|SLC45A4	nc|ENSG00000022567|Q5BKX6-2|SLC45A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.296630859375	2	493.78711	985.559667	0.42327	0.00020901	-0.3523	-0.00017396	0.070971	3.5044E-05	493.78731692737864	47.315	0.48266	47.368	47.168	47.651	0.052574					29	17	2	0	0	0	0.23775	1	10771	10771		18.135	5.6034	1	362720			50283	516	28754	28755	61364	61364					0.06630948311237717
TVSVALHLF	9	Unmodified	_TVSVALHLF_					0	0	0		nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4;nc|ENSG00000022567|Q5BKX6-3|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4	nc|ENSG00000022567|Q5BKX6-2|SLC45A4	nc|ENSG00000022567|Q5BKX6-2|SLC45A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7872314453125	2	493.78711	985.559667	0.91125	0.00044996	-0.93541	-0.00046189	-0.024165	-1.1932E-05	493.78708606277206	47.327	0.58461	47.382	47.117	47.702	0.054371					36	21	2	0	0	0	0.23775	2	10742	10742;10772		18.135	1.9859	1	403490			50284	516	28754	28755	61365;61366	61365					0.06630948311237717
TVSVSKKEKNR	11	Unmodified	_TVSVSKKEKNR_					0	0	0		ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	ENSG00000087365|ENST00000322535|SF3B2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.37451171875	2	638.372601	1274.73065	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.732	1	96.727	96.227	97.227	-0.0055466								0	0	0	0.37382	1	25876	25876		2.9952	0.49676	1				50285	1306	28755	28756	61367	61367					0.10427233891891774
TVTAQILLK	9	Unmodified	_TVTAQILLK_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K;ENST00000514461.1_1_4:116964948-116965134:-|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.81573486328125	2	493.815867	985.617182	0.27235	0.00013449	-0.24757	-0.00012226	0.024777	1.2235E-05	493.81565576017016	46.536	1.4654	46.536	46.168	47.634	0					117	52	4	0	0	0	0.00024732	2	10493	10445;10493		132.38	48.656	1	6908800			50286	7093	28756	28757	61368;61369	61369					0.12379790516820321
TVTAQILLK	9	Unmodified	_TVTAQILLK_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K;ENST00000514461.1_1_4:116964948-116965134:-|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.8157958984375	2	493.815867	985.617182	0.49779	0.00024582	-0.62758	-0.00030991	-0.1298	-6.4095E-05	493.81560704529363	46.48	1.5757	46.533	46.202	47.777	0.052574					168	58	6	0	0	0	8.0996E-05	2	10469	10420;10469		143.91	49.85	1	7794100			50287	7093	28756	28757	61370;61371	61371					0.12379790516820321
TVTAQILLK	9	Unmodified	_TVTAQILLK_					0	0	0		ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K;ENSG00000178982|ENST00000248342|EIF3K;ENST00000514461.1_1_4:116964948-116965134:-|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	ENST00000586932.5_1_19:39109833-39116793:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.8157958984375	2	493.815867	985.617182	0.25254	0.00012471	-0.40017	-0.00019761	-0.14763	-7.29E-05	493.8157221802228	46.497	1.4315	46.551	46.217	47.648	0.054371					152	51	5	0	0	0	0.00024732	2	10430	10430;10477		132.38	49.85	1	7415000			50288	7093	28756	28757	61372;61373	61372					0.12379790516820321
TVTDRYIF	8	Unmodified	_TVTDRYIF_					0	0	0		nc|ENSG00000155324|Q96HH9-5|GRAMD2B;nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-2|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B;ENST00000504859.5_1_5:125807941-125819298:+|nuORF	nc|ENSG00000155324|Q96HH9-5|GRAMD2B	nc|ENSG00000155324|Q96HH9-5|GRAMD2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.8208312988281	2	507.766374	1013.5182	0.23835	0.00012102	-0.084479	-4.2895E-05	0.15387	7.8129E-05	508.2678028625898	60.402	0.43536	60.39	60.108	60.544	-0.011486					24	15	2	0	0	0	0.30503	1	14680	14680		30.225	0	1	274750			50289	5170	28757	28758	61374	61374					0.011977675518892283
TVTDRYIF	8	Unmodified	_TVTDRYIF_					0	0	0		nc|ENSG00000155324|Q96HH9-5|GRAMD2B;nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-2|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B;ENST00000504859.5_1_5:125807941-125819298:+|nuORF	nc|ENSG00000155324|Q96HH9-5|GRAMD2B	nc|ENSG00000155324|Q96HH9-5|GRAMD2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	507.766374	1013.5182	-0.1771	-8.9924E-05	-0.052016	-2.6412E-05	-0.22911	-0.00011634	507.7663412318821	60.218	0.44621	60.313	60.131	60.577	0.095093	-0.041343	5.4033E-05	NaN	16.942	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285550			50290	5170	28757	28758							0.011977675518892283
TVTEVLLKY	9	Unmodified	_TVTEVLLKY_					0	0	0		nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF;ENST00000551901.5_1_16:21823661-21831677:-|nuORF;ENST00000566038.1_1_16:29086353-29102074:+|nuORF;nc|ENSG00000085721|Q9NYV6-2|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3	nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000427965.6_1_16:29086353-29124388:+|nuORF	ENST00000427965.6_1_16:29086353-29124388:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3132934570312	2	533.313158	1064.61176	0.53365	0.0002846	-0.18264	-9.7405E-05	0.35101	0.0001872	533.3130622741982	55.547	0.80293	55.547	55.246	56.049	0					66	28	3	0	0	0	0.0079761	1	13278	13278		82.529	50.224	1	1700500			50291	11950;1262	28758	28759	61375	61375					0.08204066934331422
TVTEVLLKY	9	Unmodified	_TVTEVLLKY_					0	0	0		nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF;ENST00000551901.5_1_16:21823661-21831677:-|nuORF;ENST00000566038.1_1_16:29086353-29102074:+|nuORF;nc|ENSG00000085721|Q9NYV6-2|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3	nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000427965.6_1_16:29086353-29124388:+|nuORF	ENST00000427965.6_1_16:29086353-29124388:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3134155273438	2	533.313158	1064.61176	0.57882	0.00030869	-0.32878	-0.00017534	0.25004	0.00013335	533.3130328943365	55.491	1.107	55.561	55.055	56.162	0.070885					85	40	3	0	0	0	0.014206	1	13271	13271		72.968	40.662	1	1756800			50292	11950;1262	28758	28759	61376	61376					0.08204066934331422
TVTEVLLKY	9	Unmodified	_TVTEVLLKY_					0	0	0		nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF;ENST00000551901.5_1_16:21823661-21831677:-|nuORF;ENST00000566038.1_1_16:29086353-29102074:+|nuORF;nc|ENSG00000085721|Q9NYV6-2|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3	nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000427965.6_1_16:29086353-29124388:+|nuORF	ENST00000427965.6_1_16:29086353-29124388:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3134155273438	2	533.313158	1064.61176	0.6138	0.00032735	-0.15393	-8.2095E-05	0.45987	0.00024525	533.313054438518	55.638	0.78046	55.619	55.379	56.159	-0.019077					70	28	3	0	0	0	0.014206	1	13302	13302		72.968	34.994	1	1646200			50293	11950;1262	28758	28759	61377	61377					0.08204066934331422
TVTFSVSTK	9	Unmodified	_TVTFSVSTK_					0	0	0			REV__ENST00000493605.1_1_1:63999785-63999890:+|nuORF	REV__ENST00000493605.1_1_1:63999785-63999890:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.2662353515625	2	485.266207	968.517862	0.60575	0.00029395	-0.40798	-0.00019798	0.19777	9.597E-05	485.26606024612556	37.23	1.8973	37.23	36.673	38.571	0					184	67	5	0	0	0	0.19747	1	7745	7745		24.021	1.2843	1	13799000	+		50294	18912	28759	28760	61378	61378					0.03234347832062667
TVTFSVSTK	9	Unmodified	_TVTFSVSTK_					0	0	0			REV__ENST00000493605.1_1_1:63999785-63999890:+|nuORF	REV__ENST00000493605.1_1_1:63999785-63999890:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.2662048339844	2	485.266207	968.517862	0.31086	0.00015085	-0.080871	-3.9244E-05	0.22999	0.0001116	485.2662150711078	37.097	2.5192	37.184	36.207	38.726	0.08741					229	91	5	0	0	0	0.17277	2	7549	7549;7699		27.629	10.516	1	14525000	+		50295	18912	28759	28760	61379;61380	61379					0.03234347832062667
TVTFSVSTK	9	Unmodified	_TVTFSVSTK_					0	0	0			REV__ENST00000493605.1_1_1:63999785-63999890:+|nuORF	REV__ENST00000493605.1_1_1:63999785-63999890:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2663269042969	2	485.266207	968.517862	0.46657	0.00022641	-0.21771	-0.00010565	0.24885	0.00012076	485.2661424210842	37.088	2.2077	37.181	36.279	38.486	0.093014					200	79	5	0	0	0	0.088443	1	7647	7647		39.95	1.7741	1	15537000	+		50296	18912	28759	28760	61381	61381					0.03234347832062667
TVTINYSSVQ	10	Unmodified	_TVTINYSSVQ_					0	0	0			REV__nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10	REV__nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.296875	2	556.285128	1110.5557	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.23	1	101.22	100.72	101.72	-0.0054703								0	0	0	0.36441	1	27030	27030		8.7454	0	1		+		50297	19230	28760	28761	61382	61382					0.0048481402686775255
TVTIPLIKM	9	Unmodified	_TVTIPLIKM_					0	0	0			REV__ENST00000540872.5_1_10:46242054-46245556:+|nuORF	REV__ENST00000540872.5_1_10:46242054-46245556:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3009033203125	2	508.314646	1014.61474	0.91788	0.00046657	-1.374	-0.00069844	-0.45615	-0.00023187	508.3138779114131	47.125	0.25317	47.179	46.972	47.225	0.054371					13	8	2	0	0	0	0.28128	1	10632	10632		11.64	0	1	448880	+		50298	22121	28761	28762	61383	61383					0.10801618787490952
TVTLLSVEMT	10	Unmodified	_TVTLLSVEMT_					0	0	0		nc|ENSG00000135127|Q6ZP65|BICDL1	nc|ENSG00000135127|Q6ZP65|BICDL1	nc|ENSG00000135127|Q6ZP65|BICDL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.9439086914062	2	547.294107	1092.57366	0.67046	0.00036694	2.5805	0.0014123	3.2509	0.0017792	547.297171738302	53.811	0.50786	53.811	53.568	54.076	0					37	18	3	0	0	0	0.31358	1	12735	12735		13.906	0.29118	1	221780			50299	12712	28762	28763	61384	61384					0.03107812957364331
TVTLMKPSSF	10	Unmodified	_TVTLMKPSSF_					0	0	0		ENSG00000121621|ENST00000263181|KIF18A	ENSG00000121621|ENST00000263181|KIF18A	ENSG00000121621|ENST00000263181|KIF18A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8170166015625	2	555.796817	1109.57908	-0.088152	-4.8994E-05	-1.0712	-0.00059538	-1.1594	-0.00064437	556.297358946429	99.47	0.24797	99.47	99.254	99.502	0					45	31	2	0	0	0	0.31889	1	26561	26561		3.2813	1.2216	1	64922			50300	3000	28763	28764	61385	61385					0.028675365398157737
TVTLPPEL	8	Unmodified	_TVTLPPEL_					0	0	0		ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	ENSG00000142327|ENST00000270357|RNPEPL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2514343261719	2	435.252569	868.490584	0.035693	1.5536E-05	-0.97161	-0.00042289	-0.93591	-0.00040736	435.2523013353534	70.83	3.8097	70.805	70.106	73.916	-0.024864					337	137	5	0	0	0	0.30517	1	17844	17844		30.225	0	1	9181200			50301	4437	28764	28765	61386	61386					0.05107864291653641
TVTLSTKQ	8	Unmodified	_TVTLSTKQ_					0	0	0		nc|ENSG00000214558|P0DQW0|ZC3H11C;ENSG00000215817|ENST00000651890|ZC3H11B;ENSG00000058673|ENST00000367210|ZC3H11A	nc|ENSG00000214558|P0DQW0|ZC3H11C	nc|ENSG00000214558|P0DQW0|ZC3H11C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.2530517578125	2	439.2531	876.491647	-0.03477	-1.5273E-05	0.39182	0.00017211	0.35705	0.00015683	439.2531993610808	16.429	0.5357	16.429	16.184	16.72	0					51	18	4	0	0	0	0.42371	1	1359	1359		14.838	0	1	257900			50302	736	28765	28766	61387	61387					0.048460786605687645
TVTLVVPVPA	10	Unmodified	_TVTLVVPVPA_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3101806640625	2	498.310418	994.606283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.29	1	91.29	90.79	91.79	0								0	0	0	0.37739	1	24236	24236		3.2813	0	1		+		50303	17310	28766	28767	61388	61388					0.1087638814251477
TVTLVVTH	8	Unmodified	_TVTLVVTH_					0	0	0			REV__ENSG00000131187|ENST00000253496|F12	REV__ENSG00000131187|ENST00000253496|F12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.25079345703125	2	435.258185	868.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.67	1	69.648	69.148	70.148	-0.022087								0	0	0	0.37183	1	17605	17605		4.756	0.42677	1		+		50304	15503	28767	28768	61389	61389					0.062306863857997996
TVTNLVGHT	9	Unmodified	_TVTNLVGHT_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;ENST00000509957.5_1_5:37142364-37158376:-|nuORF	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2463684082031	2	471.256174	940.497795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.844	1	34.844	34.344	35.344	0								0	0	0	0.18374	1	6914	6914		26.884	3.7352	1				50305	7983	28768	28769	61390	61390					0.025165968920987325
TVTSEPLTV	9	Unmodified	_TVTSEPLTV_					0	0	0			REV__ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	REV__ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2469482421875	2	473.758215	945.501877	0.078443	3.7163E-05	1.2116	0.00057402	1.2901	0.00061118	473.75853525429903	24.942	0.75291	24.942	24.575	25.328	0					47	25	3	0	0	0	0.10197	1	3939	3939		37.974	5.6685	1	231240	+		50306	16360	28769	28770	61391	61391					0.02694641595144276
TVTSEPLTV	9	Unmodified	_TVTSEPLTV_					0	0	0			REV__ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	REV__ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7588195800781	2	473.758215	945.501877	0.075068	3.5564E-05	1.2645	0.00059908	1.3396	0.00063464	473.75843859871947	25.084	0.76509	25.028	24.6	25.365	-0.055931					46	26	3	0	0	0	0.10197	2	3934	3934;3961		37.974	3.8716	1	209130	+		50307	16360	28769	28770	61392;61393	61392					0.02694641595144276
TVTSEPLTV	9	Unmodified	_TVTSEPLTV_					0	0	0			REV__ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	REV__ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	473.758215	945.501877	0.075068	3.5564E-05	1.2645	0.00059908	1.3396	0.00063464	473.75843859871947	25.084	0.76509	25.028	24.6	25.365	-0.055931	0.043138	-0.0002587	NaN	37.974	46	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209130	+		50308	16360	28769	28770							0.02694641595144276
TVTSPCPEPV	10	Unmodified	_TVTSPCPEPV_					0	0	0			REV__ENSG00000169474|ENST00000368762|SPRR1A	REV__ENSG00000169474|ENST00000368762|SPRR1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.27197265625	2	515.2497	1028.48485	0.58534	0.0003016	0.32807	0.00016904	0.91341	0.00047063	515.2498259033686	48.018	0.53387	48.018	47.797	48.331	0					23	18	2	0	0	0	0.31267	1	10885	10885		14.838	0.93222	1	746900	+		50309	17516	28770	28771	61394	61394					-0.028256022823143212
TVTSPCPEPV	10	Unmodified	_TVTSPCPEPV_					0	0	0			REV__ENSG00000169474|ENST00000368762|SPRR1A	REV__ENSG00000169474|ENST00000368762|SPRR1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	515.2497	1028.48485	0.64672	0.00033322	0.15736	8.1081E-05	0.80408	0.0004143	515.2497514577689	48.015	0.39541	48.062	47.919	48.314	0.04752	0.030618	9.7026E-06	NaN	19.257	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	757300	+		50310	17516	28770	28771							-0.028256022823143212
TVTSPCPEPV	10	Unmodified	_TVTSPCPEPV_					0	0	0			REV__ENSG00000169474|ENST00000368762|SPRR1A	REV__ENSG00000169474|ENST00000368762|SPRR1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	515.2497	1028.48485	0.4227	0.00021779	0.051945	2.6765E-05	0.47464	0.00024456	515.24969794778	47.971	0.41871	48.015	47.875	48.294	0.043324	-0.017079	-9.8929E-05	NaN	19.257	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1089400	+		50311	17516	28770	28771							-0.028256022823143212
TVTSYVFLK	9	Unmodified	_TVTSYVFLK_					0	0	0		ENST00000417678.5_1_2:220079697-220081182:-|nuORF;ENST00000446716.5_1_2:220075515-220081188:-|nuORF;nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6	ENST00000417678.5_1_2:220079697-220081182:-|nuORF	ENST00000417678.5_1_2:220079697-220081182:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3003540039062	2	529.30005	1056.58555	0.46444	0.00024583	0.2218	0.0001174	0.68624	0.00036322	529.30006389709	52.044	1.497	52.044	51.676	53.173	0					78	53	2	0	0	0	0.067563	1	12165	12165		57.722	42.884	1	2104600			50312	2668	28771	28772	61395	61395					0.059517977628502194
TVTSYVFLK	9	Unmodified	_TVTSYVFLK_					0	0	0		ENST00000417678.5_1_2:220079697-220081182:-|nuORF;ENST00000446716.5_1_2:220075515-220081188:-|nuORF;nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6	ENST00000417678.5_1_2:220079697-220081182:-|nuORF	ENST00000417678.5_1_2:220079697-220081182:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3001708984375	2	529.30005	1056.58555	0.43648	0.00023103	0.36802	0.0001948	0.8045	0.00042582	529.3000934671444	51.97	0.92395	52.021	51.758	52.682	0.050575					81	33	4	0	0	0	0.016005	1	12153	12153		75.761	50.362	1	2389200			50313	2668	28771	28772	61396	61396					0.059517977628502194
TVTSYVFLK	9	Unmodified	_TVTSYVFLK_					0	0	0		ENST00000417678.5_1_2:220079697-220081182:-|nuORF;ENST00000446716.5_1_2:220075515-220081188:-|nuORF;nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6	ENST00000417678.5_1_2:220079697-220081182:-|nuORF	ENST00000417678.5_1_2:220079697-220081182:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3004150390625	2	529.30005	1056.58555	0.28953	0.00015325	0.47824	0.00025313	0.76777	0.00040638	529.3001499666241	52.102	0.95321	52.101	51.793	52.746	-0.00080872					88	34	4	0	0	0	0.042824	1	12241	12241		66.457	41.057	1	2321300			50314	2668	28771	28772	61397	61397					0.059517977628502194
TVTTLNRVN	9	Unmodified	_TVTTLNRVN_					0	0	0			REV__nc|ENSG00000136826|O43474-6|KLF4	REV__nc|ENSG00000136826|O43474-6|KLF4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3009033203125	2	509.288005	1016.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.714	1	32.77	32.27	33.27	0.055309								0	0	0	0.16039	1	6265	6265		32.305	11.852	1		+		50315	23002	28772	28773	61398	61398					0.05383957329183886
TVTTVILEV	9	Unmodified	_TVTTVILEV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7921142578125	2	487.792058	973.569563	0.3035	0.00014804	-0.28194	-0.00013753	0.021558	1.0516E-05	487.7917474693384	70.336	1.48	70.336	69.895	71.375	0					136	53	4	0	0	0	0.00056175	6	17874	17810;17825;17874;17921;18040;18058		128.37	15.772	1	3089500			50316	2862	28773	28774	61399;61400;61401;61402;61403;61404	61401					0.08172091525955238
TVTTVILEV	9	Unmodified	_TVTTVILEV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7921142578125	2	487.792058	973.569563	0.30278	0.0001477	-0.2469	-0.00012043	0.055889	2.7262E-05	487.79179063285517	70.296	1.2805	70.362	69.967	71.248	0.06604					115	45	4	0	0	0	0.0015545	5	17832	17785;17832;17884;17941;18058		115.69	15.321	1	3071200			50317	2862	28773	28774	61405;61406;61407;61408;61409	61406					0.08172091525955238
TVTTVILEV	9	Unmodified	_TVTTVILEV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7918395996094	2	487.792058	973.569563	0.36061	0.0001759	-0.39649	-0.00019341	-0.035887	-1.7505E-05	487.79170186769744	70.369	1.515	70.344	69.855	71.37	-0.024864					139	54	4	0	0	0	0.00056175	4	17796	17796;17803;17908;17960		128.37	15.772	1	2894000			50318	2862	28773	28774	61410;61411;61412;61413	61410					0.08172091525955238
TVTVQMMLV	9	Unmodified	_TVTVQMMLV_					0	0	0			REV__ENSG00000106460|ENST00000396668|TMEM106B	REV__ENSG00000106460|ENST00000396668|TMEM106B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.29034423828125	2	511.274664	1020.53477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.9	1	112.92	112.42	113.42	0.014824								0	0	0	0.26258	1	29377	29377		2.3027	0	1		+		50319	14522	28774	28775	61414	61414					0.025328091220103488
TVVAEEGGEA	10	Unmodified	_TVVAEEGGEA_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2270812988281	2	481.227279	960.440005	0.13099	6.3036E-05	0.30398	0.00014628	0.43497	0.00020932	481.2273265004391	46.218	0.89732	46.278	45.9	46.798	0.059834					56	32	2	0	0	0	0.2811	1	10422	10422		22.736	3.4793	1	1547500			50320	5124	28775	28776	61415	61415					-0.04179709823995381
TVVATFVRYN	10	Unmodified	_TVVATFVRYN_					0	0	0		ENSG00000113262|ENST00000517717|GRM6;GRM6|p.P689Lfs*24|1|0.27|ENSG00000113262|chr5:178986188-178986188|G/-|frameshift_variant	ENSG00000113262|ENST00000517717|GRM6	ENSG00000113262|ENST00000517717|GRM6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.2720947265625	2	585.319306	1168.62406	0.34173	0.00020002	-1.8212	-0.001066	-1.4795	-0.00086595	585.3182833091537	32.803	0.51611	32.857	32.553	33.069	0.054371					30	18	2	0	0	0	0.31958	1	6196	6196		5.2969	0	1	205140			50321	2483	28776	28777	61416	61416					0.04649103397377985
TVVCTYNGVD	10	Unmodified	_TVVCTYNGVD_					0	0	0			REV__ENST00000438282.6_1_3:2613181-3030164:+|nuORF	REV__ENST00000438282.6_1_3:2613181-3030164:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2828369140625	2	535.744782	1069.47501	0.083845	4.492E-05	0.39087	0.00020941	0.47472	0.00025433	535.7449812670679	27.536	0.39927	27.514	27.242	27.641	-0.021412					19	13	2	0	0	0	0.31847	1	4710	4710		6.7232	0.51738	1	94118	+		50322	16247	28777	28778	61417	61417					-0.056947902877027445
TVVEEQEQ	8	Unmodified	_TVVEEQEQ_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2273864746094	2	481.227279	960.440005	-0.071001	-3.4167E-05	0.070931	3.4134E-05	-7.0021E-05	-3.3696E-08	481.2274258127918	46.317	0.75679	46.317	46.003	46.76	0					68	27	5	0	0	0	0.42642	1	10419	10419		13.906	0.39817	1	1876400			50323	12859	28778	28779	61418	61418					-0.04179709823995381
TVVEPAPLK	9	Unmodified	_TVVEPAPLK_					0	0	0		nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB;PI4KB|p.Y159Tfs*40|1|0.39|ENSG00000143393|chr1:151316008-151316008|G/-|frameshift_variant	nc|ENSG00000143393|Q9UBF8-2|PI4KB	nc|ENSG00000143393|Q9UBF8-2|PI4KB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.28662109375	2	477.286943	952.559333	0.42731	0.00020395	-0.12226	-5.8351E-05	0.30506	0.0001456	477.28665791824653	46.632	0.54709	46.684	46.467	47.014	0.052574					35	19	3	0	0	0	0.18803	1	10591	10591		25.399	0	1	544190			50324	4512	28779	28780	61419	61419					0.08115528591360999
TVVEPAPLK	9	Unmodified	_TVVEPAPLK_					0	0	0		nc|ENSG00000143393|Q9UBF8-2|PI4KB;ENSG00000143393|ENST00000368873|PI4KB;PI4KB|p.Y159Tfs*40|1|0.39|ENSG00000143393|chr1:151316008-151316008|G/-|frameshift_variant	nc|ENSG00000143393|Q9UBF8-2|PI4KB	nc|ENSG00000143393|Q9UBF8-2|PI4KB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	477.286943	952.559333	0.29609	0.00014132	0.084295	4.0233E-05	0.38038	0.00018155	477.2867210062914	46.666	0.59779	46.72	46.44	47.037	0.054375	-0.0092415	0.00029868	NaN	25.399	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	580220			50325	4512	28779	28780							0.08115528591360999
TVVEQKIAF	9	Unmodified	_TVVEQKIAF_					0	0	0			REV__nc|ENSG00000134954|P14921-5|ETS1	REV__nc|ENSG00000134954|P14921-5|ETS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7850341796875	2	517.797675	1033.5808	0.38435	0.00019901	-1.2693	-0.00065723	-0.88493	-0.00045821	517.7972973035398	51.158	0.54304	51.205	50.985	51.528	0.046577					50	20	4	0	0	0	0.22596	1	12003	12003		21.747	0	1	653310	+		50326	15712	28780	28781	61420	61420					0.06534913620089355
TVVFNGNLL	9	Unmodified	_TVVFNGNLL_					0	0	0			REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	REV__nc|ENSG00000163638|Q9P2N4-2|ADAMTS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2705078125	2	488.776742	975.538931	0.39741	0.00019424	0.35429	0.00017317	0.7517	0.00036741	488.77671014852274	37.95	0.58834	37.95	37.707	38.295	0					32	20	2	0	0	0	0.1939	1	7926	7926		24.021	0	1	303170	+		50327	17075	28781	28782	61421	61421					0.05018357931567152
TVVKLQPG	8	Unmodified	_TVVKLQPG_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;ENST00000494058.5_1_6:31934804-31935971:+|nuORF;ENST00000461915.5_1_6:31934795-31936203:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.5144348144531	2	421.260728	840.506903	-0.1186	-4.9961E-05	0.59725	0.0002516	0.47865	0.00020164	421.26052995572024	26.253	0.44969	26.214	26.069	26.519	-0.038671					29	15	3	0	0	0	0.34092	1	4334	4334		13.508	0	1	99210			50328	8219	28782	28783	61422	61422					0.0802699024843605
TVVRMLLVA	9	Unmodified	_TVVRMLLVA_					0	0	0			REV__TAPT1|p.I414M|1|0.27|ENSG00000169762|chr4:16170724-16170724|G/C|missense_variant	REV__TAPT1|p.I414M|1|0.27|ENSG00000169762|chr4:16170724-16170724|G/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2769775390625	2	501.312438	1000.61032	0.37399	0.00018749	-2.3776	-0.0011919	-2.0037	-0.0010045	501.81305149523865	70.62	0.14349	70.62	70.54	70.683	0					5	4	2	0	0	0	0.21905	1	17913	17913		16.942	6.1184	1	31334	+		50329	23320	28783	28784	61423	61423					0.11004154364582064
TVVRNGTLP	9	Unmodified	_TVVRNGTLP_					0	0	0			REV__ENSG00000092470|ENST00000263795|WDR76	REV__ENSG00000092470|ENST00000263795|WDR76	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.9747619628906	2	478.779816	955.545079	0.20418	9.7757E-05	0.25629	0.00012271	0.46047	0.00022046	478.7798695683634	38.03	0.81179	38.03	37.707	38.518	0					54	28	3	0	0	0	0.20167	1	7886	7886		22.736	0	1	651410	+		50330	14083	28784	28785	61424	61424					0.0655287616308442
TVVRSRFTAAL	11	Unmodified	_TVVRSRFTAAL_					0	0	0		ENST00000588124.1_1_19:9435006-9443770:+|nuORF	ENST00000588124.1_1_19:9435006-9443770:+|nuORF	ENST00000588124.1_1_19:9435006-9443770:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.57464599609375	3	407.575178	1219.70371	-0.029951	-1.2207E-05	-0.66193	-0.00026979	-0.69189	-0.000282	407.57469183590223	38.226	0.53804	38.324	37.927	38.465	0.09753					63	18	4	0	0	0	0.33189	1	7959	7959		11.631	1.3161	1	749920			50331	12138	28785	28786	61425	61425					0.10264170071377521
TVVRSRFTAAL	11	Unmodified	_TVVRSRFTAAL_					0	0	0		ENST00000588124.1_1_19:9435006-9443770:+|nuORF	ENST00000588124.1_1_19:9435006-9443770:+|nuORF	ENST00000588124.1_1_19:9435006-9443770:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	407.575178	1219.70371	-0.029951	-1.2207E-05	-0.66193	-0.00026979	-0.69189	-0.000282	407.57469183590223	38.226	0.53804	38.324	37.927	38.465	0.09753	0.014197	3.4349E-05	NaN	11.631	63	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	749920			50332	12138	28785	28786							0.10264170071377521
TVVSDVELPPW	11	Unmodified	_TVVSDVELPPW_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5522766113281	3	414.551928	1240.63395	-0.22276	-9.2347E-05	0.62648	0.00025971	0.40371	0.00016736	414.5522620668666	15.892	0.76788	15.892	15.528	16.295	0					89	26	5	0	0	0	0.47545	1	1205	1205		1.3296	0.1363	1	488680			50333	8091	28786	28787	61426	61426					0.02326246612074101
TVVSVSRV	8	Unmodified	_TVVSVSRV_					0	0	0			REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.55810546875	2	423.75581	845.497067	-0.3851	-0.00016319	0.132	5.5936E-05	-0.25309	-0.00010725	423.7558099318302	13.321	0.3101	13.321	13.227	13.537	0					21	10	3	0	0	0	0.34353	1	425	425		4.756	0	1	180140	+		50334	16085	28787	28788	61427	61427					0.06813802243050304
TVVTIHATL	9	Unmodified	_TVVTIHATL_					0	0	0			REV__ENSG00000169488|ENST00000305051|OR4K15	REV__ENSG00000169488|ENST00000305051|OR4K15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2638244628906	2	477.784567	953.554582	0.21772	0.00010402	0.13968	6.6737E-05	0.3574	0.00017076	477.78461601472935	31.489	0.66075	31.53	30.959	31.62	0.040991					34	23	3	0	0	0	0.2322	1	5778	5778		20.454	3.3407	1	190470	+		50335	17518	28788	28789	61428	61428					0.07594644448602139
TVVVTEITL	9	Unmodified	_TVVVTEITL_					0	0	0		ENST00000460311.1_1_2:150443601-150444208:-|nuORF	ENST00000460311.1_1_2:150443601-150444208:-|nuORF	ENST00000460311.1_1_2:150443601-150444208:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7997131347656	2	487.792058	973.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.078	1	97.072	96.572	97.572	-0.0055466								0	0	0	0.20238	1	25979	25979		21.747	0	1				50336	10725	28789	28790	61429	61429					0.08172091525932501
TVVVTEITL	9	Unmodified	_TVVVTEITL_					0	0	0		ENST00000460311.1_1_2:150443601-150444208:-|nuORF	ENST00000460311.1_1_2:150443601-150444208:-|nuORF	ENST00000460311.1_1_2:150443601-150444208:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7999572753906	2	487.792058	973.569563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.59	1	114.61	114.11	115.11	0.016708								0	0	0	0.2489	1	29797	29797		6.7232	0	1				50337	10725	28789	28790	61430	61430					0.08172091525932501
TVWDAKASH	9	Unmodified	_TVWDAKASH_					0	0	0		ENST00000263253.8_1_22:41573696-41573927:+|nuORF	ENST00000263253.8_1_22:41573696-41573927:+|nuORF	ENST00000263253.8_1_22:41573696-41573927:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7884521484375	2	507.753798	1013.49304	-0.088036	-4.4701E-05	-2.3802	-0.0012086	-2.4683	-0.0012533	507.7526641324416	13.846	0.5095	13.741	13.513	14.023	-0.10466					27	17	2	0	0	0	0.25988	1	582	582		3.9444	0.3479	1	40234			50338	9002	28790	28791	61431	61431					-0.013162872506768508
TVWKPRPV	8	Unmodified	_TVWKPRPV_					0	0	0		ENST00000552109.5_1_12:42554393-42631425:-|nuORF	ENST00000552109.5_1_12:42554393-42631425:-|nuORF	ENST00000552109.5_1_12:42554393-42631425:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.253662109375	2	491.795269	981.575986	0.32486	0.00015976	-0.4745	-0.00023336	-0.14965	-7.3596E-05	491.7949936634546	17.23	0.90666	17.23	16.839	17.746	0					47	31	2	0	0	0	0.34337	1	1524	1524		5.2307	0	1	46257			50339	11808	28791	28792	61432	61432					0.08446074267988024
TVWKRLFRK	9	Unmodified	_TVWKRLFRK_					0	0	0		nc|ENSG00000146755|Q86XT4-2|TRIM50;ENSG00000146755|ENST00000333149|TRIM50	nc|ENSG00000146755|Q86XT4-2|TRIM50	nc|ENSG00000146755|Q86XT4-2|TRIM50	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2348937988281	3	411.924142	1232.7506	0.18882	7.7778E-05	-0.87376	-0.00035992	-0.68494	-0.00028214	412.25801677697785	38.343	0.47563	38.441	38.202	38.678	0.097527					20	16	2	0	0	0	0.25949	1	7955	7955		0.96228	0	1	123650			50340	4726	28792	28793	61433	61433					0.1435307441315672
TVWRHMSALL	10	Unmodified	_TVWRHMSALL_					0	0	0		ENST00000438568.6_1_1:150479567-150479729:+|nuORF	ENST00000438568.6_1_1:150479567-150479729:+|nuORF	ENST00000438568.6_1_1:150479567-150479729:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.22186279296875	3	405.221859	1212.64375	0.15677	6.3527E-05	-0.074074	-3.0016E-05	0.082698	3.3511E-05	405.22181435781727	44.648	0.68436	44.648	44.357	45.041	0					43	24	2	0	0	0	0.34325	1	9952	9952		8.4443	1.3426	1	920410			50341	10538	28793	28794	61434	61434					0.045931561364795925
TVWYSVFSKL	10	Unmodified	_TVWYSVFSKL_					0	0	0		ENST00000481203.1_1_3:100463662-100466999:+|nuORF	ENST00000481203.1_1_3:100463662-100466999:+|nuORF	ENST00000481203.1_1_3:100463662-100466999:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.9306335449219	3	410.557013	1228.64921	-0.18302	-7.514E-05	-1.6154	-0.00066319	-1.7984	-0.00073833	410.55704818582944	30.408	0.13935	30.435	30.309	30.448	0.027157					6	4	2	0	0	0	0.31889	1	5547	5547		1.5923	0	1	19819			50342	11025	28794	28795	61435	61435					0.04403158199943391
TVYAGLFLR	9	Unmodified	_TVYAGLFLR_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7579956054688	2	520.300384	1038.58622	0.029672	1.5439E-05	0.38431	0.00019996	0.41399	0.0002154	520.3004190685627	60.018	0.60299	60.018	59.728	60.331	0					42	21	3	0	0	0	0.15943	1	14643	14643		39.95	20.693	1	464410			50343	5202	28795	28796	61436	61436					0.06846637202556849
TVYAGLFLR	9	Unmodified	_TVYAGLFLR_					0	0	0		ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	ENSG00000155897|ENST00000286355|ADCY8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7581176757812	2	520.300384	1038.58622	0.21934	0.00011412	0.052446	2.7288E-05	0.27179	0.00014141	520.3003776079739	59.947	0.58697	59.936	59.763	60.35	-0.011486					29	20	2	0	0	0	0.18123	1	14613	14613		34.402	15.145	1	553510			50344	5202	28795	28796	61437	61437					0.06846637202556849
TVYALPTI	8	Unmodified	_TVYALPTI_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.2550354003906	2	439.255111	876.49567	0.0077533	3.4057E-06	-0.10236	-4.4961E-05	-0.094604	-4.1555E-05	439.25497738201085	69.904	0.92097	69.904	69.485	70.406	0					71	33	3	0	0	0	0.050494	2	17666	17666;17719		77.984	7.2688	1	559510			50345	2364	28796	28797	61438;61439	61438					0.05248168154275845
TVYALPTI	8	Unmodified	_TVYALPTI_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.2549743652344	2	439.255111	876.49567	-0.018206	-7.9971E-06	-0.013386	-5.8797E-06	-0.031592	-1.3877E-05	439.25499164855984	69.84	1.0034	69.906	69.548	70.552	0.066048					71	35	3	0	0	0	0.050494	2	17677	17677;17727		77.984	7.2688	1	517830			50346	2364	28796	28797	61440;61441	61440					0.05248168154275845
TVYALPTI	8	Unmodified	_TVYALPTI_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.25494384765625	2	439.255111	876.49567	0.070927	3.1155E-05	-0.11876	-5.2165E-05	-0.04783	-2.101E-05	439.25494875274984	69.938	1.0509	69.915	69.591	70.642	-0.022087					71	37	3	0	0	0	0.034972	3	17694	17647;17694;17772		85.357	7.4677	1	535430			50347	2364	28796	28797	61442;61443;61444	61443					0.05248168154275845
TVYCKSTEF	9	Unmodified	_TVYCKSTEF_					0	0	0			REV__ENST00000553854.1_1_14:82127981-82128125:+|nuORF	REV__ENST00000553854.1_1_14:82127981-82128125:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.266845703125	2	539.2497	1076.48485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.198	1	68.198	67.698	68.698	0								0	0	0	0.15265	1	17167	17167		34.102	9.4286	1		+		50348	22228	28797	28798	61445	61445					-0.05033602282310312
TVYEEMMAK	9	2 Oxidation (M)	_TVYEEM(Oxidation (M))M(Oxidation (M))AK_		TVYEEM(1)M(1)AK		TVYEEM(58)M(58)AK	0	0	2		ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2462768554688	2	567.2463	1132.47805	0.080367	4.5588E-05	-0.16047	-9.1026E-05	-0.080103	-4.5438E-05	567.2462357873768	18.666	0.93568	18.666	18.332	19.267	0					101	32	4	0	0	0	0.037019	2	2037	1990;2037		57.722	38.465	1	634440			50349	4601	28798	28799	61446;61447	61447		581;582			-0.0828928322516731
TVYEEMMAK	9	2 Oxidation (M)	_TVYEEM(Oxidation (M))M(Oxidation (M))AK_		TVYEEM(1)M(1)AK		TVYEEM(60)M(60)AK	0	0	2		ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2463989257812	2	567.2463	1132.47805	0.19096	0.00010832	-0.30476	-0.00017287	-0.1138	-6.4553E-05	567.2461938379032	18.768	1.0423	18.651	18.267	19.309	-0.11739					103	36	4	0	0	0	0.03069	2	2073	2030;2073		60.074	44.227	1	542330			50350	4601	28798	28799	61448;61449	61449		581;582			-0.0828928322516731
TVYEEMMAK	9	2 Oxidation (M)	_TVYEEM(Oxidation (M))M(Oxidation (M))AK_		TVYEEM(1)M(1)AK		TVYEEM(76)M(76)AK	0	0	2		ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	ENSG00000144659|ENST00000650617|SLC25A38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2462158203125	2	567.2463	1132.47805	-0.06412	-3.6372E-05	-0.13132	-7.4489E-05	-0.19544	-0.00011086	567.2463257588188	18.742	1.1098	18.684	18.372	19.482	-0.058174					99	38	4	0	0	0	0.012386	2	2011	2011;2053		75.761	54.014	1	657600			50351	4601	28798	28799	61450;61451	61450		581;582			-0.0828928322516731
TVYEGPFASR	10	Unmodified	_TVYEGPFASR_					0	0	0		ENSG00000213341|ENST00000370397|CHUK;CHUK|p.W511Gfs*46|1|0.28|ENSG00000213341|chr10:100202126-100202126|A/-|frameshift_variant	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8326416015625	2	563.780013	1125.54547	0.21096	0.00011893	-0.15617	-8.8047E-05	0.054784	3.0886E-05	563.7797303220121	42.926	1.0579	42.926	42.33	43.388	0					70	38	2	0	0	0	0.28683	1	9393	9393		22.775	11.951	1	560800			50352	8340	28799	28800	61452	61452					-0.012277489077177961
TVYEGPFASR	10	Unmodified	_TVYEGPFASR_					0	0	0		ENSG00000213341|ENST00000370397|CHUK;CHUK|p.W511Gfs*46|1|0.28|ENSG00000213341|chr10:100202126-100202126|A/-|frameshift_variant	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.83251953125	2	563.780013	1125.54547	0.25853	0.00014575	-0.36539	-0.000206	-0.10687	-6.0249E-05	563.7797083684179	42.585	0.98604	42.671	42.121	43.107	0.085197					72	35	3	0	0	0	0.26647	1	9367	9367		28.234	13.395	1	579150			50353	8340	28799	28800	61453	61453					-0.012277489077177961
TVYEGPFASR	10	Unmodified	_TVYEGPFASR_					0	0	0		ENSG00000213341|ENST00000370397|CHUK;CHUK|p.W511Gfs*46|1|0.28|ENSG00000213341|chr10:100202126-100202126|A/-|frameshift_variant	ENSG00000213341|ENST00000370397|CHUK	ENSG00000213341|ENST00000370397|CHUK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.832763671875	2	563.780013	1125.54547	0.17519	9.8769E-05	-0.1678	-9.4601E-05	0.0073938	4.1685E-06	563.779670074976	42.557	1.0561	42.649	42.067	43.123	0.091362					67	37	3	0	0	0	0.28683	1	9333	9333		28.234	28.234	1	599540			50354	8340	28799	28800	61454	61454					-0.012277489077177961
TVYGKGVYFAR	11	Unmodified	_TVYGKGVYFAR_					0	0	0		ENSG00000178685|ENST00000313028|PARP10;ENST00000526007.5_1_8:145051654-145057989:-|nuORF	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.9273986816406	3	420.896029	1259.66626	0.072979	3.0716E-05	-0.50677	-0.0002133	-0.43379	-0.00018258	420.89582017228355	36.562	0.6268	36.562	36.332	36.959	0					44	21	3	0	0	0	0.33025	1	7440	7440		9.2438	4.3468	1	320230			50355	7068	28800	28801	61455	61455					0.046810788057428
TVYGKGVYFAR	11	Unmodified	_TVYGKGVYFAR_					0	0	0		ENSG00000178685|ENST00000313028|PARP10;ENST00000526007.5_1_8:145051654-145057989:-|nuORF	ENSG00000178685|ENST00000313028|PARP10	ENSG00000178685|ENST00000313028|PARP10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.92724609375	3	420.896029	1259.66626	0.49886	0.00020997	-0.7534	-0.0003171	-0.25454	-0.00010714	420.8957911744278	36.426	0.53947	36.512	36.3	36.839	0.08625					43	18	4	0	0	0	0.33056	1	7418	7418		8.7518	2.1214	1	322280			50356	7068	28800	28801	61456	61456					0.046810788057428
TVYIGQLGF	9	Unmodified	_TVYIGQLGF_					0	0	0			REV__ENSG00000156162|ENST00000414645|DPY19L4	REV__ENSG00000156162|ENST00000414645|DPY19L4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7822570800781	2	499.271293	996.528032	0.39568	0.00019755	0.6837	0.00034135	1.0794	0.0005389	499.2719004666189	75.764	0.41316	75.732	75.443	75.857	-0.031487					21	14	2	0	0	0	0.25417	1	19381	19381		2.0598	0	1	155340	+		50357	16733	28801	28802	61457	61457					0.029629555573023936
TVYIRFWR	8	Unmodified	_TVYIRFWR_					0	0	0		ENST00000472912.5_1_10:75609023-75633197:-|nuORF	ENST00000472912.5_1_10:75609023-75633197:-|nuORF	ENST00000472912.5_1_10:75609023-75633197:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2347412109375	2	570.819276	1139.624	0.51317	0.00029293	-0.85684	-0.0004891	-0.34367	-0.00019617	570.818512790646	36.378	0.31332	36.461	36.308	36.621	0.082359					15	10	2	0	0	0	0.34131	1	7376	7376		7.9102	0	1	121780			50358	10900	28802	28803	61458	61458					0.05977148188026149
TVYIRFWRVL	10	Unmodified	_TVYIRFWRVL_					0	0	0		ENST00000472912.5_1_10:75609023-75633197:-|nuORF	ENST00000472912.5_1_10:75609023-75633197:-|nuORF	ENST00000472912.5_1_10:75609023-75633197:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7581787109375	3	451.599435	1351.77648	-0.14713	-6.6442E-05	2.0358	0.00091935	1.8886	0.00085291	451.93479519566483	61.923	0.19717	62.02	61.978	62.175	0.096985					9	6	2	0	0	0	0.32082	1	15240	15240		3.3196	0.47636	1	93388			50359	10900	28803	28804	61459	61459					0.114659238647846
TVYIYREHF	9	Unmodified	_TVYIYREHF_					0	0	0		ENST00000379638.8_1_5:112214131-112214335:-|nuORF	ENST00000379638.8_1_5:112214131-112214335:-|nuORF	ENST00000379638.8_1_5:112214131-112214335:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5875549316406	3	409.876746	1226.60841	-0.98782	-0.00040488	-0.12108	-4.9627E-05	-1.1089	-0.00045451	409.8781076694582	34.555	0.11819	34.555	34.5	34.618	0					5	3	2	0	0	0	0.25949	1	6829	6829		4.897	0.70751	1	19931			50360	9972	28804	28805	61460	61460					0.0041681688030621444
TVYLPLSTI	9	Unmodified	_TVYLPLSTI_					0	0	0		nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	nc|ENSG00000189056|P78509-3|RELN	nc|ENSG00000189056|P78509-3|RELN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2809753417969	2	503.794601	1005.57465	0.39939	0.00020121	-0.23443	-0.00011811	0.16496	8.3106E-05	503.7943430502296	82.235	0.52023	82.235	81.968	82.489	0					27	18	2	0	0	0	0.17787	1	21450	21450		26.884	0	1	215330			50361	7797	28805	28806	61461	61461					0.07208395388579447
TVYLPLSTI	9	Unmodified	_TVYLPLSTI_					0	0	0		nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	nc|ENSG00000189056|P78509-3|RELN	nc|ENSG00000189056|P78509-3|RELN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	503.794601	1005.57465	0.37683	0.00018985	-2.0396	-0.0010275	-1.6628	-0.0008377	503.79377946889736	82.496	0.50371	82.569	82.452	82.956	0.073097	0.24195	-0.0012355	NaN	26.884	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139360			50362	7797	28805	28806							0.07208395388579447
TVYLPLSTI	9	Unmodified	_TVYLPLSTI_					0	0	0		nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	nc|ENSG00000189056|P78509-3|RELN	nc|ENSG00000189056|P78509-3|RELN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	503.794601	1005.57465	0.4211	0.00021215	-0.91596	-0.00046145	-0.49485	-0.0002493	503.7939765162583	82.201	1.0985	82.177	82.004	83.103	-0.02404	-0.14993	-0.00010332	NaN	26.884	58	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	410930			50363	7797	28805	28806							0.07208395388579447
TVYNRLSLL	9	Unmodified	_TVYNRLSLL_					0	0	0		ENST00000528145.5_1_11:46666897-46677909:+|nuORF;ENST00000534610.5_1_11:46665841-46681092:+|nuORF;nc|ENSG00000175224|O75143-4|ATG13;nc|ENSG00000175224|O75143-3|ATG13;nc|ENSG00000175224|O75143-2|ATG13;nc|ENSG00000175224|O75143|ATG13;ENSG00000175224|ENST00000683050|ATG13	ENST00000528145.5_1_11:46666897-46677909:+|nuORF	ENST00000528145.5_1_11:46666897-46677909:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2981567382812	2	539.816399	1077.61824	0.3269	0.00017647	0.16978	9.1652E-05	0.49669	0.00026812	539.8165886198948	61.65	0.68873	61.65	61.307	61.996	0					68	25	4	0	0	0	0.0082143	1	15192	15192		78.149	0	1	2221500			50364	6850	28806	28807	61462	61462					0.08254004885725408
TVYNRLSLL	9	Unmodified	_TVYNRLSLL_					0	0	0		ENST00000528145.5_1_11:46666897-46677909:+|nuORF;ENST00000534610.5_1_11:46665841-46681092:+|nuORF;nc|ENSG00000175224|O75143-4|ATG13;nc|ENSG00000175224|O75143-3|ATG13;nc|ENSG00000175224|O75143-2|ATG13;nc|ENSG00000175224|O75143|ATG13;ENSG00000175224|ENST00000683050|ATG13	ENST00000528145.5_1_11:46666897-46677909:+|nuORF	ENST00000528145.5_1_11:46666897-46677909:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2981567382812	2	539.816399	1077.61824	0.067302	3.6331E-05	0.34893	0.00018836	0.41623	0.00022469	539.8167642743721	61.555	0.64529	61.652	61.385	62.03	0.096985					61	23	4	0	0	0	0.01083	1	15165	15165		78.149	5.1815	1	2700200			50365	6850	28806	28807	61463	61463					0.08254004885725408
TVYNVFFAR	9	Unmodified	_TVYNVFFAR_					0	0	0		ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.7962646484375	2	558.795466	1115.57638	0.41421	0.00023146	0.23901	0.00013356	0.65322	0.00036502	558.7954729401972	59.415	0.31632	59.403	59.173	59.489	-0.012386					19	10	2	0	0	0	0.015027	1	14461	14461		71.708	51.254	1	193010			50366	2756	28807	28808	61464	61464					0.023214491971884854
TVYNVFFAR	9	Unmodified	_TVYNVFFAR_					0	0	0		ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	558.795466	1115.57638	0.17355	9.6977E-05	0.32131	0.00017954	0.49485	0.00027652	558.7952858824241	59.497	0.4323	59.497	59.188	59.621	0	0.099699	-6.7966E-05	NaN	71.708	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193100			50367	2756	28807	28808							0.023214491971884854
TVYNVFFAR	9	Unmodified	_TVYNVFFAR_					0	0	0		ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	ENSG00000116830|ENST00000369466|TTF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	558.795466	1115.57638	0.31929	0.00017842	0.76878	0.00042959	1.0881	0.00060801	558.79556024574	59.2	0.3867	59.291	59.101	59.488	0.091305	-0.10559	0.00043213	NaN	71.708	20	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162650			50368	2756	28807	28808							0.023214491971884854
TVYRELQK	8	Unmodified	_TVYRELQK_					0	0	0		ENSG00000087586|ENST00000395915|AURKA	ENSG00000087586|ENST00000395915|AURKA	ENSG00000087586|ENST00000395915|AURKA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7786865234375	2	518.792924	1035.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.502	1	37.589	37.089	38.089	0.08741								0	0	0	0.35466	1	7728	7728		12.532	0.89125	1				50369	1310	28808	28809	61465	61465					0.05493145334571636
TVYSLLDTL	9	Unmodified	_TVYSLLDTL_					0	0	0		ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	ENSG00000100744|ENST00000555181|GSKIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7711181640625	2	512.78169	1023.54883	0.24526	0.00012577	0.65543	0.00033609	0.9007	0.00046186	512.782194112225	76.383	0.83012	76.383	76.049	76.879	0					50	29	2	0	0	0	0.22188	1	19788	19788		20.454	3.5113	1	405350			50370	1627	28809	28810	61466	61466					0.0379950114629537
TVYTTLIDVTK	11	Unmodified	_TVYTTLIDVTK_					0	0	0		nc|ENSG00000104763|Q13510-2|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-3|ASAH1	nc|ENSG00000104763|Q13510-2|ASAH1	nc|ENSG00000104763|Q13510-2|ASAH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.3534545898438	2	627.353011	1252.69147	0.49091	0.00030798	-0.025264	-1.585E-05	0.46565	0.00029213	627.3528765411056	58.478	0.58924	58.478	58.243	58.832	0					46	19	3	0	0	0	0.00022304	3	14161	14161;14218;14270		135.87	135.87	1	1022300			50371	1913	28810	28811	61467;61468;61469	61467					0.07523088817652024
TVYTTLIDVTK	11	Unmodified	_TVYTTLIDVTK_					0	0	0		nc|ENSG00000104763|Q13510-2|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-3|ASAH1	nc|ENSG00000104763|Q13510-2|ASAH1	nc|ENSG00000104763|Q13510-2|ASAH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.353759765625	2	627.353011	1252.69147	0.10067	6.3155E-05	0.32231	0.0002022	0.42298	0.00026536	627.3531907873395	58.264	0.64991	58.35	58.084	58.734	0.085621					52	22	3	0	0	0	0.00082477	2	14091	14091;14140		125.66	102.92	1	1157400			50372	1913	28810	28811	61470;61471	61470					0.07523088817652024
TVYTTLIDVTK	11	Unmodified	_TVYTTLIDVTK_					0	0	0		nc|ENSG00000104763|Q13510-2|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-3|ASAH1	nc|ENSG00000104763|Q13510-2|ASAH1	nc|ENSG00000104763|Q13510-2|ASAH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.3536987304688	2	627.353011	1252.69147	0.57283	0.00035937	-0.3	-0.00018821	0.27283	0.00017116	627.352836039048	58.494	0.60936	58.48	58.25	58.86	-0.014267					48	21	3	0	0	0	0.00082477	2	14173	14173;14237		125.66	125.66	1	1374800			50373	1913	28810	28811	61472;61473	61472					0.07523088817652024
TVYWEKRRK	9	Unmodified	_TVYWEKRRK_					0	0	0		ENSG00000268480|ENST00000691075|NFILZ	ENSG00000268480|ENST00000691075|NFILZ	ENSG00000268480|ENST00000691075|NFILZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.7058410644531	3	422.57529	1264.70404	-0.98205	-0.00041499	1.1936	0.0005044	0.21158	8.9407E-05	422.57582403898823	34.441	0.16228	34.516	34.414	34.576	0.075306					10	5	3	0	0	0	0.25612	1	6789	6789		8.1555	3.108	1	44947			50374	8686	28811	28812	61474	61474					0.08227589791226819
TWFLLDSIL	9	Unmodified	_TWFLLDSIL_					0	0	0		nc|ENSG00000273777|Q6UY09-2|CEACAM20;nc|ENSG00000273777|Q6UY09-5|CEACAM20;ENSG00000273777|ENST00000614924|CEACAM20;nc|ENSG00000273777|Q6UY09-4|CEACAM20;nc|ENSG00000273777|Q6UY09-3|CEACAM20	nc|ENSG00000273777|Q6UY09-2|CEACAM20	nc|ENSG00000273777|Q6UY09-2|CEACAM20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8297729492188	2	554.307875	1106.6012	0.42041	0.00023304	1.7347	0.00096154	2.1551	0.0011946	554.3089044859082	92.98	0.39767	92.981	92.804	93.201	0.00046539					64	37	2	0	0	0	0.25066	1	24785	24785		11.64	1.5664	1	192150			50375	8709	28812	28813	61475	61475					0.05216084279913957
TWFRDEKIQ	9	Unmodified	_TWFRDEKIQ_					0	0	0			REV__ENSG00000181004|ENST00000314218|BBS12	REV__ENSG00000181004|ENST00000314218|BBS12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.8359375	2	611.814387	1221.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.951	1	24.951	24.451	25.451	0								0	0	0	0.25054	1	3905	3905		2.9952	1.8019	1		+		50376	18129	28813	28814	61476	61476					0.012279153919962482
TWFTAAGFIHL	11	Unmodified	_TWFTAAGFIHL_					0	0	0		ENSG00000215262|ENST00000399881|KCNU1	ENSG00000215262|ENST00000399881|KCNU1	ENSG00000215262|ENST00000399881|KCNU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.7996215820312	2	632.329673	1262.64479	0.57731	0.00036505	2.1007	0.0013283	2.678	0.0016934	632.3307653580991	53.114	0.437	53.171	52.942	53.379	0.056259					20	15	2	0	0	0	0.33037	1	12546	12546		7.609	0	1	220900			50377	8405	28814	28815	61477	61477					0.023976937770612494
TWGLWLWNIK	10	Unmodified	_TWGLWLWNIK_					0	0	0			REV__ENST00000560010.1_1_15:96833853-96870526:-|nuORF	REV__ENST00000560010.1_1_15:96833853-96870526:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2340393066406	3	439.576519	1315.70773	-0.11863	-5.2146E-05	-0.81837	-0.00035973	-0.93699	-0.00041188	439.5764178325424	17.147	0.72108	17.029	16.746	17.467	-0.11739					64	25	4	0	0	0	0.32051	1	1650	1650		3.8763	1.2451	1	135790	+		50378	21711	28815	28816	61478	61478					0.06250259565081251
TWGLWLWNIK	10	Unmodified	_TWGLWLWNIK_					0	0	0			REV__ENST00000560010.1_1_15:96833853-96870526:-|nuORF	REV__ENST00000560010.1_1_15:96833853-96870526:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.23406982421875	3	439.576519	1315.70773	0.17387	7.6428E-05	-1.0519	-0.00046239	-0.87803	-0.00038596	439.5762377950807	17.052	0.83216	16.992	16.756	17.588	-0.060429					69	29	4	0	0	0	0.32051	1	1664	1664		3.8763	0.55669	1	128230	+		50379	21711	28815	28816	61479	61479					0.06250259565081251
TWIIHRTY	8	Unmodified	_TWIIHRTY_					0	0	0		ENST00000368990.7_2_10:124152762-124159877:+|nuORF	ENST00000368990.7_2_10:124152762-124159877:+|nuORF	ENST00000368990.7_2_10:124152762-124159877:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3118286132812	2	545.295633	1088.57671	0.25779	0.00014057	-1.3684	-0.00074621	-1.1107	-0.00060564	545.2954747600377	15.863	0.61802	15.863	15.624	16.242	0					35	21	4	0	0	0	0.34353	1	1096	1096		4.756	0.42677	1	72688			50380	9774	28816	28817	61480	61480					0.03596868917043139
TWNLTWIM	8	Unmodified	_TWNLTWIM_					0	0	0		ENSG00000171094|ENST00000389048|ALK;ALK|p.K767Rfs*23|1|0.33|ENSG00000171094|chr2:29239735-29239735|T/-|frameshift_variant	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3209838867188	2	532.76532	1063.51609	0.2457	0.0001309	-1.4482	-0.00077157	-1.2025	-0.00064066	532.7633381446833	61.037	0.20554	61.134	61.093	61.299	0.096985					10	7	2	0	0	0	0.3366	1	14978	14978		18.135	2.3668	1	435170			50381	6509	28817	28818	61481	61481					-0.013129844575814786
TWQRYLPL	8	Unmodified	_TWQRYLPL_					0	0	0			REV__nc|ENSG00000285188|Q08493-2|PDE4C	REV__nc|ENSG00000285188|Q08493-2|PDE4C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7960815429688	2	538.798009	1075.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.29	1	113.31	112.81	113.81	0.014824								0	0	0	0.37724	1	29479	29479		2.3027	0.24298	1		+		50382	14473	28818	28819	61482	61482					0.046697530598066805
TWRLRTCRRTW	11	Unmodified	_TWRLRTCRRTW_					0	0	0			REV__ENST00000557420.1_1_15:93588805-93616230:-|nuORF	REV__ENST00000557420.1_1_15:93588805-93616230:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.76385498046875	3	512.277249	1533.80992	-0.035467	-1.8169E-05	3.1601	0.0016189	3.1247	0.0016007	512.6139020880627	12.275	0.19651	12.275	12.135	12.332	0					9	7	2	0	0	0	0.33334	1	40	40		1.2148	1.12	1	9442.8	+		50383	22270	28819	28820	61483	61483					0.0643660236503365
TWRLRTCRRTW	11	Unmodified	_TWRLRTCRRTW_					0	0	0			REV__ENST00000557420.1_1_15:93588805-93616230:-|nuORF	REV__ENST00000557420.1_1_15:93588805-93616230:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	512.277249	1533.80992	-0.21082	-0.000108	2.6769	0.0013713	2.4661	0.0012633	512.2783138752075	12.319	0.14591	12.251	12.167	12.313	-0.06806	-0.012451	-0.00022235	NaN	1.2148	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11238	+		50384	22270	28819	28820							0.0643660236503365
TWRRTTKA	8	Unmodified	_TWRRTTKA_					0	0	0			REV__ENST00000563630.5_2_16:2051172-2051695:-|nuORF	REV__ENST00000563630.5_2_16:2051172-2051695:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.3059387207031	2	510.290882	1018.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.68	1	118.7	118.2	119.2	0.026253								0	0	0	0.37825	1	30723	30723		1.8442	1.0506	1		+		50385	22333	28820	28821	61484	61484					0.058671006315080376
TWSVPILV	8	Unmodified	_TWSVPILV_					0	0	0			REV__ENSG00000156282|ENST00000286808|CLDN17	REV__ENSG00000156282|ENST00000286808|CLDN17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.77081298828125	2	457.770929	913.527304	0.31615	0.00014472	0.88908	0.00040699	1.2052	0.00055172	457.77098268169004	84.736	2.9578	84.736	83.427	86.385	0					175	113	2	0	0	0	0.33916	4	22403	22150;22252;22403;22449		26.341	5.4701	1	567380	+		50386	16740	28821	28822	61485;61486;61487;61488	61487					0.06708160908237915
TWSVPILV	8	Unmodified	_TWSVPILV_					0	0	0			REV__ENSG00000156282|ENST00000286808|CLDN17	REV__ENSG00000156282|ENST00000286808|CLDN17	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.77044677734375	2	457.770929	913.527304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.228	1	84.228	83.728	84.728	0								0	0	0	0.31676	1	22070	22070		26.341	0	1		+		50387	16740	28821	28822	61489	61489					0.06708160908237915
TWSVPILV	8	Unmodified	_TWSVPILV_					0	0	0			REV__ENSG00000156282|ENST00000286808|CLDN17	REV__ENSG00000156282|ENST00000286808|CLDN17	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7710266113281	2	457.770929	913.527304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.377	1	84.377	83.877	84.877	0								0	0	0	0.31676	1	22116	22116		26.341	0	1		+		50388	16740	28821	28822	61490	61490					0.06708160908237915
TWSVPILV	8	Unmodified	_TWSVPILV_					0	0	0			REV__ENSG00000156282|ENST00000286808|CLDN17	REV__ENSG00000156282|ENST00000286808|CLDN17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.770263671875	2	457.770929	913.527304	0.3664	0.00016773	0.51209	0.00023442	0.87849	0.00040215	457.77069776290426	84.176	3.8803	84.159	83.187	87.067	-0.016823					197	157	2	0	0	0	0.33916	3	22023	21955;22023;22128		26.341	0	1	524570	+		50389	16740	28821	28822	61491;61492;61493	61492					0.06708160908237915
TWTEVSYTF	9	Unmodified	_TWTEVSYTF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.260986328125	2	567.261122	1132.50769	0.30244	0.00017156	0.40489	0.00022968	0.70733	0.00040124	567.2613086434023	71.302	1.7871	71.302	70.963	72.75	0					171	64	4	0	0	0	3.327E-09	6	18122	18033;18075;18122;18172;18481;18528		180.01	118.65	1	4377800			50390	2735	28822	28823	61494;61495;61496;61497;61498;61499	61496					-0.05326259893195129
TWTEVSYTF	9	Unmodified	_TWTEVSYTF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2793579101562	2	567.261122	1132.50769	0.37068	0.00021027	1.6393	0.00092991	2.01	0.0011402	567.2621369669374	72.807	0.26342	72.807	72.726	72.989	0					17	9	2	0	0	0	0.18803	1	18575	18575		25.399	3.6527	1	84878			50391	2735	28822	28823	61500	61500					-0.05326259893195129
TWTEVSYTF	9	Unmodified	_TWTEVSYTF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2608642578125	2	567.261122	1132.50769	0.38074	0.00021598	0.36534	0.00020724	0.74608	0.00042322	567.2612293743039	71.258	1.8907	71.319	70.987	72.878	0.060783					181	68	4	0	0	0	5.2996E-06	6	18097	18028;18046;18097;18147;18472;18534		156.16	94.798	1	4520100			50392	2735	28822	28823	61501;61502;61503;61504;61505;61506	61503					-0.05326259893195129
TWTEVSYTF	9	Unmodified	_TWTEVSYTF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2611083984375	2	567.261122	1132.50769	0.35452	0.00020111	0.48576	0.00027556	0.84028	0.00047666	567.2613242137569	71.371	1.6896	71.345	71.023	72.713	-0.026306					163	60	5	0	0	0	3.327E-09	4	18116	18071;18116;18165;18501		180.01	118.65	1	4706600			50393	2735	28822	28823	61507;61508;61509;61510	61508					-0.05326259893195129
TWTPSALKF	9	Unmodified	_TWTPSALKF_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	nc|ENSG00000142173|P12110-2|COL6A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.78466796875	2	525.784567	1049.55458	0.399	0.00020979	-1.3419	-0.00070557	-0.94294	-0.00049578	525.7841864504074	61.738	0.88142	61.738	61.487	62.369	0					47	32	2	0	0	0	0.016723	1	15212	15212		69.105	14.331	1	506110			50394	4426;12731	28823	28824	61511	61511					0.031786444485987886
TWTPSALKF	9	Unmodified	_TWTPSALKF_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	nc|ENSG00000142173|P12110-2|COL6A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7847290039062	2	525.784567	1049.55458	0.059317	3.1188E-05	-0.67757	-0.00035625	-0.61825	-0.00032507	525.7844070150443	61.696	0.9015	61.793	61.455	62.357	0.096985					45	32	2	0	0	0	0.03069	2	15193	15193;15254		60.074	14.053	1	445210			50395	4426;12731	28823	28824	61512;61513	61512					0.031786444485987886
TWTPSALKF	9	Unmodified	_TWTPSALKF_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	nc|ENSG00000142173|P12110-2|COL6A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8367919921875	2	525.784567	1049.55458	0.1915	0.00010069	-1.0586	-0.00055658	-0.86706	-0.00045589	525.7843378827083	61.773	0.82455	61.764	61.425	62.25	-0.0085526					43	29	2	0	0	0	0.13898	1	15120	15120		36.127	2.0246	1	464780			50396	4426;12731	28823	28824	61514	61514					0.031786444485987886
TWTSHIRAPF	10	Unmodified	_TWTSHIRAPF_					0	0	0			REV__ENST00000533603.5_1_11:75283222-75283375:+|nuORF	REV__ENST00000533603.5_1_11:75283222-75283375:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.8468627929688	2	608.317097	1214.61964	0.65207	0.00039667	-0.80642	-0.00049056	-0.15435	-9.3895E-05	608.3164165288011	84.287	0.46401	84.287	83.973	84.437	0					33	18	3	0	0	0	0.31691	1	22113	22113		5.7319	2.7366	1	575260	+		50397	22044	28824	28825	61515	61515					0.02091638974457055
TWVPQGSAPSW	11	Unmodified	_TWVPQGSAPSW_					0	0	0			REV__ENST00000382477.6_1_19:1230139-1233502:-|nuORF	REV__ENST00000382477.6_1_19:1230139-1233502:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.5365295410156	3	405.864617	1214.57202	-0.38723	-0.00015716	0.1709	6.9364E-05	-0.21633	-8.78E-05	406.1989925823379	42.417	0.53548	42.417	42.251	42.786	0					40	19	4	0	0	0	0.33119	1	9181	9181		2.6312	0.72486	1	470790	+		50398	20572	28825	28826	61516	61516					-0.026680600163899726
TWVPQGSAPSW	11	Unmodified	_TWVPQGSAPSW_					0	0	0			REV__ENST00000382477.6_1_19:1230139-1233502:-|nuORF	REV__ENST00000382477.6_1_19:1230139-1233502:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	405.864617	1214.57202	0.060413	2.4519E-05	-0.6166	-0.00025025	-0.55618	-0.00022573	405.8641742679341	42.046	0.45053	42.131	41.983	42.434	0.085201	-0.080896	-0.00052735	NaN	4.1166	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375270	+		50399	20572	28825	28826							-0.026680600163899726
TWVPQGSAPSW	11	Unmodified	_TWVPQGSAPSW_					0	0	0			REV__ENST00000382477.6_1_19:1230139-1233502:-|nuORF	REV__ENST00000382477.6_1_19:1230139-1233502:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.864617	1214.57202	0.11924	4.8396E-05	-0.65562	-0.00026609	-0.53637	-0.00021769	405.86424920901817	41.996	0.3949	42.088	41.929	42.324	0.091358	-0.12413	-0.00057486	NaN	4.1166	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270300	+		50400	20572	28825	28826							-0.026680600163899726
TWVSFVPLL	9	Unmodified	_TWVSFVPLL_					0	0	0		ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3192138671875	2	531.305136	1060.59572	0.60293	0.00032034	0.38052	0.00020217	0.98346	0.00052251	531.3050452051087	84.356	1.0015	84.434	84.123	85.125	0.077095					112	39	5	0	0	0	0.28674	1	22242	22242		10.824	0	1	405020			50401	6406	28826	28827	61517	61517					0.06784405488087941
TYACRLASHCL	11	Unmodified	_TYACRLASHCL_					0	0	0		ENSG00000128310|ENST00000249041|GALR3	ENSG00000128310|ENST00000249041|GALR3	ENSG00000128310|ENST00000249041|GALR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.81103515625	2	619.29445	1236.57435	0.53565	0.00033173	0.56617	0.00035063	1.1018	0.00068236	619.2952199457853	55.036	0.71419	55.02	54.55	55.264	-0.015923					34	26	2	0	0	0	0.329	1	13075	13075		9.3831	0	1	569770			50402	3362	28827	28828	61518	61518					-0.03447670874584219
TYAEISQAF	9	Unmodified	_TYAEISQAF_					0	0	0		nc|ENSG00000109667|Q9NRM0-2|SLC2A9;ENSG00000109667|ENST00000264784|SLC2A9;ENST00000512342.5_1_4:9800851-9889242:-|nuORF;ENST00000503280.5_1_4:9800851-9909967:-|nuORF;ENST00000503803.5_1_4:9781600-9889242:-|nuORF	nc|ENSG00000109667|Q9NRM0-2|SLC2A9	nc|ENSG00000109667|Q9NRM0-2|SLC2A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2481079101562	2	515.248015	1028.48148	0.24546	0.00012647	0.70417	0.00036282	0.94964	0.0004893	515.2481934295729	59.274	0.64342	59.274	58.917	59.56	0					49	22	3	0	0	0	0.015027	2	14407	14407;14493		71.708	37.306	1	604530			50403	2263	28828	28829	61519;61520	61519					-0.03162529064661612
TYAEISQAF	9	Unmodified	_TYAEISQAF_					0	0	0		nc|ENSG00000109667|Q9NRM0-2|SLC2A9;ENSG00000109667|ENST00000264784|SLC2A9;ENST00000512342.5_1_4:9800851-9889242:-|nuORF;ENST00000503280.5_1_4:9800851-9909967:-|nuORF;ENST00000503803.5_1_4:9781600-9889242:-|nuORF	nc|ENSG00000109667|Q9NRM0-2|SLC2A9	nc|ENSG00000109667|Q9NRM0-2|SLC2A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2659301757812	2	515.248015	1028.48148	0.33027	0.00017017	0.2464	0.00012696	0.57667	0.00029713	515.2479996298638	59.313	0.59832	59.298	58.917	59.515	-0.014267					36	20	2	0	0	0	0.18208	1	14487	14487		26.268	4.5215	1	634280			50404	2263	28828	28829	61521	61521					-0.03162529064661612
TYAEISQAF	9	Unmodified	_TYAEISQAF_					0	0	0		nc|ENSG00000109667|Q9NRM0-2|SLC2A9;ENSG00000109667|ENST00000264784|SLC2A9;ENST00000512342.5_1_4:9800851-9889242:-|nuORF;ENST00000503280.5_1_4:9800851-9909967:-|nuORF;ENST00000503803.5_1_4:9781600-9889242:-|nuORF	nc|ENSG00000109667|Q9NRM0-2|SLC2A9	nc|ENSG00000109667|Q9NRM0-2|SLC2A9	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	515.248015	1028.48148	0.33027	0.00017017	0.2464	0.00012696	0.57667	0.00029713	515.2479996298638	59.313	0.59832	59.298	58.917	59.515	-0.014267	0.011965	-0.00024866	NaN	71.708	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	634280			50405	2263	28828	28829							-0.03162529064661612
TYAEKLHRL	9	Unmodified	_TYAEKLHRL_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.L1332Qfs*9|1|0.18|ENSG00000151914|chr6:56628119-56628129|GTAGTACTTCA/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;DST|p.L898Pfs*11|1|0.03|ENSG00000151914|chr6:56634936-56634937|-/CAAATTGAGGT|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.81982421875	2	565.819473	1129.62439	0.20053	0.00011346	0.40176	0.00022732	0.60229	0.00034079	565.8196584822402	25.124	0.87134	25.124	24.843	25.714	0					40	29	2	0	0	0	0.010888	2	3987	3931;3987		78.06	53.07	1	478440			50406	273;12761	28829	28830	61522;61523	61523					0.06476523117225952
TYAEKLHRL	9	Unmodified	_TYAEKLHRL_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.L1332Qfs*9|1|0.18|ENSG00000151914|chr6:56628119-56628129|GTAGTACTTCA/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;DST|p.L898Pfs*11|1|0.03|ENSG00000151914|chr6:56634936-56634937|-/CAAATTGAGGT|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.820068359375	2	565.819473	1129.62439	0.15916	9.0053E-05	-2.4522	-0.0013875	-2.293	-0.0012974	565.8196068347745	25.281	0.78876	25.225	24.888	25.677	-0.055931					78	25	4	0	0	0	0.0083763	3	3962	3962;4016;4067		81.915	59.257	1	524260			50407	273;12761	28829	28830	61524;61525;61526	61524					0.06476523117225952
TYAEKLHRL	9	Unmodified	_TYAEKLHRL_					0	0	0		DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.V3868Mfs*36|1|0.21|ENSG00000151914|chr6:56515641-56515653|AGTTCTTCAGTAC/-|frameshift_variant;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.L2377Sfs*24|1|0.05|ENSG00000151914|chr6:56568573-56568574|-/TATCTCAAGAAATTACAAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.L1332Qfs*9|1|0.18|ENSG00000151914|chr6:56628119-56628129|GTAGTACTTCA/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;DST|p.L898Pfs*11|1|0.03|ENSG00000151914|chr6:56634936-56634937|-/CAAATTGAGGT|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	DST|p.I5232Sfs*5|1|0.18|ENSG00000151914|chr6:56470139-56470139|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.820068359375	2	565.819473	1129.62439	-0.14241	-8.0581E-05	-2.272	-0.0012855	-2.4144	-0.0013661	565.8197339668975	25.308	0.79132	25.276	24.922	25.713	-0.03141					92	27	5	0	0	0	0.010888	3	3950	3950;3997;4040		78.06	57.646	1	432910			50408	273;12761	28829	28830	61527;61528;61529	61527					0.06476523117225952
TYAELMQTL	9	Oxidation (M)	_TYAELM(Oxidation (M))QTL_		TYAELM(1)QTL		TYAELM(96)QTL	0	0	1		ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7843017578125	2	543.262807	1084.51106	0.79759	0.0004333	-0.51023	-0.00027719	0.28736	0.00015611	543.2623631553832	54.736	1.0549	54.736	54.405	55.46	0					60	38	3	0	0	0	0.0045335	1	12981	12981		96.367	67.285	1	545840			50409	1372	28830	28831	61530	61530		172			-0.027813331108291095
TYAELMQTL	9	Oxidation (M)	_TYAELM(Oxidation (M))QTL_		TYAELM(1)QTL		TYAELM(100)QTL	0	0	1		ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3001098632812	2	543.262807	1084.51106	0.83829	0.00045541	-0.7857	-0.00042684	0.05259	2.857E-05	543.2623830403384	54.927	1.1748	54.99	54.41	55.584	0.063202					64	43	3	0	0	0	0.0066897	1	13062	13062		100.09	71.009	1	727980			50410	1372	28830	28831	61531	61531		172			-0.027813331108291095
TYAELMQTL	9	Oxidation (M)	_TYAELM(Oxidation (M))QTL_		TYAELM(1)QTL		TYAELM(68)QTL	0	0	1		ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	ENST00000496641.1_1_7:140710217-140710433:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3001708984375	2	543.262807	1084.51106	0.88171	0.000479	-0.39891	-0.00021671	0.48281	0.00026229	543.2623689948376	54.959	1.0991	54.943	54.55	55.649	-0.015923					61	40	3	0	0	0	0.067763	1	13093	13093		67.838	57.764	1	956970			50411	1372	28830	28831	61532	61532		172			-0.027813331108291095
TYAKQYEEF	9	Unmodified	_TYAKQYEEF_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3214721679688	2	589.771854	1177.52915	0.40379	0.00023814	0.72872	0.00042978	1.1325	0.00066792	589.7719810940426	38.512	0.46127	38.603	38.399	38.861	0.090881					32	16	3	0	0	0	0.23693	1	8011	8011		21.59	12.845	1	242280			50412	2412	28831	28832	61533	61533					-0.05250874864486832
TYAKQYEEF	9	Unmodified	_TYAKQYEEF_					0	0	0		ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3	ENSG00000112118|ENST00000596288|MCM3	ENSG00000112118|ENST00000596288|MCM3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	589.771854	1177.52915	0.10729	6.3279E-05	0.42191	0.00024883	0.5292	0.00031211	589.7719085321957	38.607	0.46869	38.607	38.347	38.816	0	0.0064845	5.3208E-05	NaN	21.59	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193640			50413	2412	28831	28832							-0.05250874864486832
TYALVYTPSGD	11	Unmodified	_TYALVYTPSGD_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.7852172851562	2	593.784961	1185.55537	0.49852	0.00029601	0.81602	0.00048454	1.3145	0.00078056	593.7853230764388	82.154	1.3926	82.154	81.558	82.95	0					100	52	3	0	0	0	0.44523	1	21310	21310		5.2969	1.7004	1	601150	+		50414	17534	28832	28833	61534	61534					-0.029986056930056293
TYAMITYFL	9	Unmodified	_TYAMITYFL_					0	0	0			REV__nc|ENSG00000146039|Q9Y2C5-4|SLC17A4	REV__nc|ENSG00000146039|Q9Y2C5-4|SLC17A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2888793945312	2	561.780636	1121.54672	0.16304	9.1593E-05	-0.49632	-0.00027882	-0.33328	-0.00018723	561.7802163173592	17.827	0.32466	17.709	17.515	17.84	-0.11739					16	10	2	0	0	0	0.26145	1	1691	1691		2.0598	0	1	44765	+		50415	13212	28833	28834	61535	61535					-0.009192508631713281
TYAPETMMF	9	2 Oxidation (M)	_TYAPETM(Oxidation (M))M(Oxidation (M))F_		TYAPETM(1)M(1)F		TYAPETM(85)M(85)F	0	0	2		ENSG00000172572|ENST00000359062|PDE3A;ENST00000544307.1_1_12:20725060-20833202:+|nuORF	ENSG00000172572|ENST00000359062|PDE3A	ENSG00000172572|ENST00000359062|PDE3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7279663085938	2	561.727743	1121.44093	0.54161	0.00030424	-0.40804	-0.00022921	0.13356	7.5027E-05	561.7275211711595	47.793	0.85379	47.793	47.302	48.156	0					54	30	3	0	0	0	0.0061338	1	10911	10911		85.357	60.683	1	750330			50416	6648	28834	28835	61536	61536		764;765			-0.11492954770938013
TYAPETMMF	9	2 Oxidation (M)	_TYAPETM(Oxidation (M))M(Oxidation (M))F_		TYAPETM(1)M(1)F		TYAPETM(120)M(120)F	0	0	2		ENSG00000172572|ENST00000359062|PDE3A;ENST00000544307.1_1_12:20725060-20833202:+|nuORF	ENSG00000172572|ENST00000359062|PDE3A	ENSG00000172572|ENST00000359062|PDE3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7278442382812	2	561.727743	1121.44093	0.58852	0.00033059	-0.18329	-0.00010296	0.40523	0.00022763	561.7275839595432	47.702	0.54507	47.75	47.321	47.866	0.04752					33	19	2	0	0	0	0.0014051	1	10870	10870		117.6	99.464	1	863620			50417	6648	28834	28835	61537	61537		764;765			-0.11492954770938013
TYAPETMMF	9	2 Oxidation (M)	_TYAPETM(Oxidation (M))M(Oxidation (M))F_					0	0	2		ENSG00000172572|ENST00000359062|PDE3A;ENST00000544307.1_1_12:20725060-20833202:+|nuORF	ENSG00000172572|ENST00000359062|PDE3A	ENSG00000172572|ENST00000359062|PDE3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	561.727743	1121.44093	0.61328	0.00034449	-0.61305	-0.00034437	0.00022257	1.2502E-07	561.7275553014385	47.625	0.76474	47.669	47.273	48.037	0.04332	-0.068573	-0.00024326	NaN	117.6	57	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565570			50418	6648	28834	28835				764;765			-0.11492954770938013
TYAPLFSLPSF	11	Unmodified	_TYAPLFSLPSF_					0	0	0		nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	nc|ENSG00000157106|Q96Q15-3|SMG1	nc|ENSG00000157106|Q96Q15-3|SMG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.8248291015625	2	621.823889	1241.63323	0.022214	1.3813E-05	-0.061025	-3.7947E-05	-0.038811	-2.4133E-05	621.8238691353162	96.569	0.24819	96.569	96.448	96.696	0					35	22	2	0	0	0	0.3013	2	25786	25786;25831		33.445	18.196	1	82315			50419	5279	28835	28836	61538;61539	61538					0.022074519630450595
TYAPLFSLPSF	11	Unmodified	_TYAPLFSLPSF_					0	0	0		nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	nc|ENSG00000157106|Q96Q15-3|SMG1	nc|ENSG00000157106|Q96Q15-3|SMG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.7554321289062	2	621.823889	1241.63323	-0.050997	-3.1711E-05	0.57746	0.00035908	0.52647	0.00032737	622.3258518255459	96.4	0.34876	96.477	96.391	96.739	0.077415					49	35	2	0	0	0	0.32531	1	25790	25790		28.495	13.246	1	79892			50420	5279	28835	28836	61540	61540					0.022074519630450595
TYAPLFSLPSF	11	Unmodified	_TYAPLFSLPSF_					0	0	0		nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1;SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	nc|ENSG00000157106|Q96Q15-3|SMG1	nc|ENSG00000157106|Q96Q15-3|SMG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3251342773438	2	621.823889	1241.63323	0.22779	0.00014165	0.050429	3.1358E-05	0.27822	0.00017301	621.8238858485046	96.579	0.41117	96.574	96.366	96.777	-0.0055466					68	41	2	0	0	0	0.25663	1	25798	25798		38.615	25.572	1	136480			50421	5279	28835	28836	61541	61541					0.022074519630450595
TYAQRTQLF	9	Unmodified	_TYAQRTQLF_					0	0	0		ENSG00000128585|ENST00000352689|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.2954711914062	2	564.29583	1126.57711	0.04113	2.3209E-05	-0.021751	-1.2274E-05	0.019379	1.0936E-05	564.2955762892003	42.562	1.0012	42.562	42.306	43.307	0					89	36	3	0	0	0	0.00024732	2	9263	9263;9309		132.38	81.338	1	1712600			50422	3375	28836	28837	61542;61543	61542					0.018882438462242135
TYAQRTQLF	9	Unmodified	_TYAQRTQLF_					0	0	0		ENSG00000128585|ENST00000352689|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.2957763671875	2	564.29583	1126.57711	0.38535	0.00021745	-0.50427	-0.00028456	-0.11892	-6.7108E-05	564.2954348187749	42.292	0.96851	42.377	42.034	43.003	0.085201					90	32	4	0	0	0	0.0019382	2	9160	9160;9208		110.79	63.198	1	1706600			50423	3375	28836	28837	61544;61545	61544					0.018882438462242135
TYAQRTQLF	9	Unmodified	_TYAQRTQLF_					0	0	0		ENSG00000128585|ENST00000352689|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	ENSG00000128585|ENST00000352689|MKLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.2955932617188	2	564.29583	1126.57711	0.33148	0.00018705	-0.38284	-0.00021603	-0.051353	-2.8978E-05	564.2955087463492	42.191	0.8958	42.282	42.007	42.903	0.091362					84	31	4	0	0	0	0.00051734	2	9177	9125;9177		128.93	73.43	1	1978900			50424	3375	28836	28837	61546;61547	61547					0.018882438462242135
TYARLAQLL	9	Unmodified	_TYARLAQLL_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.787841796875	2	524.811116	1047.60768	0.43348	0.0002275	0.48306	0.00025351	0.91654	0.00048101	524.8112950936592	59.195	0.75684	59.195	58.864	59.621	0					45	26	2	0	0	0	0.20381	1	14331	14331		29.841	11.694	1	411820			50425	6600	28837	28838	61548	61548					0.08578022231267823
TYARLAQLL	9	Unmodified	_TYARLAQLL_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7877197265625	2	524.811116	1047.60768	0.61478	0.00032265	-0.78752	-0.0004133	-0.17274	-9.0654E-05	524.8100641188472	59.162	1.0772	59.148	58.917	59.994	-0.014267					59	37	3	0	0	0	0.17696	1	14399	14399		36.506	3.7205	1	378600			50426	6600	28837	28838	61549	61549					0.08578022231267823
TYAYFRLT	8	Unmodified	_TYAYFRLT_					0	0	0			REV__ENSG00000181381|ENST00000682922|DDX60L	REV__ENSG00000181381|ENST00000682922|DDX60L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7488403320312	2	517.768917	1033.52328	0.62341	0.00032278	-2.5066	-0.0012978	-1.8832	-0.00097504	517.7677318784098	36.878	0.5079	36.878	36.644	37.152	0					24	17	2	0	0	0	0.34198	1	7579	7579		6.7232	0	1	110860	+		50427	18145	28838	28839	61550	61550					0.007860714144953818
TYAYFRLT	8	Unmodified	_TYAYFRLT_					0	0	0			REV__ENSG00000181381|ENST00000682922|DDX60L	REV__ENSG00000181381|ENST00000682922|DDX60L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.748779296875	2	517.768917	1033.52328	0.64401	0.00033345	-1.3156	-0.00068117	-0.67157	-0.00034772	517.7680853518372	36.781	0.51237	36.874	36.602	37.114	0.093014					22	18	2	0	0	0	0.34198	1	7522	7522		10.824	0	1	118740	+		50428	18145	28838	28839	61551	61551					0.007860714144953818
TYCFNASAYCK	11	Unmodified	_TYCFNASAYCK_					0	0	0		ENST00000528086.5_1_11:35160721-35231518:+|nuORF	ENST00000528086.5_1_11:35160721-35231518:+|nuORF	ENST00000528086.5_1_11:35160721-35231518:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	635.76513671875	2	635.765191	1269.51583	0.50773	0.00032279	-0.50239	-0.0003194	0.0053392	3.3945E-06	635.7650153687373	49.549	0.97462	49.594	49.293	50.268	0.044891					99	36	4	0	0	0	0.36943	1	11498	11498		15.248	3.0737	1	2040900			50429	11580	28839	28840	61552	61552					-0.10814772239723425
TYCFNASAYCK	11	Unmodified	_TYCFNASAYCK_					0	0	0		ENST00000528086.5_1_11:35160721-35231518:+|nuORF	ENST00000528086.5_1_11:35160721-35231518:+|nuORF	ENST00000528086.5_1_11:35160721-35231518:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	635.7653198242188	2	635.765191	1269.51583	0.50147	0.00031882	-0.57349	-0.0003646	-0.072017	-4.5786E-05	635.7649957065265	49.422	1.0333	49.454	49.18	50.213	0.032043					103	37	4	0	0	0	0.40332	1	11496	11496		10.8	0.72558	1	1839700			50430	11580	28839	28840	61553	61553					-0.10814772239723425
TYCIIMVLL	9	Unmodified	_TYCIIMVLL_					0	0	0			REV__ENSG00000163823|ENST00000296140|CCR1	REV__ENSG00000163823|ENST00000296140|CCR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.27978515625	2	534.795232	1067.57591	0.59531	0.00031837	-0.36018	-0.00019262	0.23513	0.00012575	534.795351767557	52.921	0.47955	52.977	52.687	53.167	0.056187					26	16	2	0	0	0	0.25066	1	12488	12488		11.64	0	1	279350	+		50431	17093	28840	28841	61554	61554					0.04482570161462718
TYCIIMVLL	9	Unmodified	_TYCIIMVLL_					0	0	0			REV__ENSG00000163823|ENST00000296140|CCR1	REV__ENSG00000163823|ENST00000296140|CCR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2796630859375	2	534.795232	1067.57591	0.50793	0.00027164	-0.39827	-0.00021299	0.10966	5.8644E-05	534.795225433096	53.134	0.38406	53.125	52.863	53.247	-0.0096054					19	13	2	0	0	0	0.24311	1	12554	12554		7.2892	0	1	389210	+		50432	17093	28840	28841	61555	61555					0.04482570161462718
TYCINNGALY	10	Unmodified	_TYCINNGALY_					0	0	0		ENST00000450755.1_1_X:122696050-122696458:+|nuORF	ENST00000450755.1_1_X:122696050-122696458:+|nuORF	ENST00000450755.1_1_X:122696050-122696458:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.2613525390625	2	566.260599	1130.50665	0.32246	0.0001826	1.404	0.00079505	1.7265	0.00097764	566.2615321082368	21.341	0.56773	21.292	21.036	21.604	-0.049377					43	19	3	0	0	0	0.32009	1	2787	2787		3.9444	0	1	127810			50433	10641	28841	28842	61556	61556					-0.05338797533727302
TYDAVLRYIY	10	Unmodified	_TYDAVLRYIY_					0	0	0			REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF	REV__ENST00000461680.1_1_3:51673299-51697433:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.8143310546875	2	638.832246	1275.64994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.891	1	53.948	53.448	54.448	0.056255								0	0	0	0.33945	1	12758	12758		19.257	4.8516	1		+		50434	17125	28842	28843	61557	61557					0.02313952848999179
TYDEIFYTL	9	Unmodified	_TYDEIFYTL_					0	0	0		ENST00000484846.1_1_11:64621807-64623066:-|nuORF;ENSG00000110047|ENST00000320631|EHD1	ENST00000484846.1_1_11:64621807-64623066:-|nuORF	ENST00000484846.1_1_11:64621807-64623066:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.77734375	2	582.776605	1163.53866	0.09509	5.5416E-05	0.68523	0.00039934	0.78032	0.00045475	582.7768400516685	81.789	0.74899	81.858	81.6	82.349	0.068993					68	31	3	0	0	0	0.11461	1	21449	21449		36.127	27.971	1	595060			50435	2291	28843	28844	61558	61558					-0.03657106578953062
TYDEIFYTL	9	Unmodified	_TYDEIFYTL_					0	0	0		ENST00000484846.1_1_11:64621807-64623066:-|nuORF;ENSG00000110047|ENST00000320631|EHD1	ENST00000484846.1_1_11:64621807-64623066:-|nuORF	ENST00000484846.1_1_11:64621807-64623066:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	582.776605	1163.53866	0.30897	0.00018006	0.62125	0.00036205	0.93022	0.00054211	582.7768961076179	81.834	0.65366	81.834	81.608	82.262	0	-0.03022	-7.5875E-05	NaN	36.127	62	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	496940			50436	2291	28843	28844							-0.03657106578953062
TYDEIFYTL	9	Unmodified	_TYDEIFYTL_					0	0	0		ENST00000484846.1_1_11:64621807-64623066:-|nuORF;ENSG00000110047|ENST00000320631|EHD1	ENST00000484846.1_1_11:64621807-64623066:-|nuORF	ENST00000484846.1_1_11:64621807-64623066:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	582.776605	1163.53866	0.35641	0.00020771	0.71189	0.00041487	1.0683	0.00062258	582.7770134794029	81.924	0.63344	81.9	81.615	82.249	-0.02404	0.035787	2.9765E-05	NaN	36.127	57	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	556680			50437	2291	28843	28844							-0.03657106578953062
TYDFLYLYLLS	11	Unmodified	_TYDFLYLYLLS_					0	0	0			REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.9114990234375	3	470.911233	1409.71187	0.16011	7.5399E-05	0.29232	0.00013765	0.45243	0.00021305	470.91142168782744	51.62	0.52699	51.667	51.454	51.981	0.046574					41	18	3	0	0	0	0.46704	1	12089	12089		2.4348	0.18206	1	486060	+		50438	14373	28844	28845	61559	61559					0.023402594775006946
TYDGNHDTF	9	Unmodified	_TYDGNHDTF_					0	0	0		ENST00000599084.1_1_19:48892794-48894615:-|nuORF;ENSG00000105438|ENST00000330720|KDELR1;nc|ENSG00000105438|P24390-2|KDELR1;ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2	ENST00000599084.1_1_19:48892794-48894615:-|nuORF;ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.2147827148438	2	535.214703	1068.41485	0.13081	7.0014E-05	0.22371	0.00011973	0.35452	0.00018975	535.214679932432	27.983	0.50967	27.983	27.732	28.241	0					39	17	3	0	0	0	0.18208	1	4838	4838		26.268	10.421	1	229330			50439	1980;3958	28845	28846	61560	61560					-0.11661764626569493
TYDGNHDTF	9	Unmodified	_TYDGNHDTF_					0	0	0		ENST00000599084.1_1_19:48892794-48894615:-|nuORF;ENSG00000105438|ENST00000330720|KDELR1;nc|ENSG00000105438|P24390-2|KDELR1;ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2	ENST00000599084.1_1_19:48892794-48894615:-|nuORF;ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	535.214703	1068.41485	-0.0027486	-1.4711E-06	0.22707	0.00012153	0.22432	0.00012006	535.2147959314062	27.937	0.53643	27.933	27.711	28.247	-0.0042553	-0.0087045	-7.7384E-07	NaN	26.268	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222570			50440	1980;3958	28845	28846							-0.11661764626569493
TYDGNHDTF	9	Unmodified	_TYDGNHDTF_					0	0	0		ENST00000599084.1_1_19:48892794-48894615:-|nuORF;ENSG00000105438|ENST00000330720|KDELR1;nc|ENSG00000105438|P24390-2|KDELR1;ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2	ENST00000599084.1_1_19:48892794-48894615:-|nuORF;ENSG00000136240|ENST00000258739|KDELR2	ENSG00000136240|ENST00000258739|KDELR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	535.214703	1068.41485	0.047109	2.5213E-05	0.23125	0.00012377	0.27836	0.00014898	535.2147138504093	27.908	0.5284	27.909	27.739	28.268	0.0004673	-0.032804	3.6974E-06	NaN	26.268	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221280			50441	1980;3958	28845	28846							-0.11661764626569493
TYDIEEEDE	9	Unmodified	_TYDIEEEDE_					0	0	0			REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7725830078125	2	571.722224	1141.42989	0.2999	0.00017146	-0.75386	-0.000431	-0.45396	-0.00025954	571.7216850937577	79.574	0.55915	79.574	79.338	79.897	0					49	21	4	0	0	0	0.25938	1	20733	20733		4.3292	0.73274	1	423420	+		50442	14184	28846	28847	61561	61561					-0.1351636233989666
TYDKGYQF	8	Unmodified	_TYDKGYQF_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.23504638671875	2	511.234907	1020.45526	0.50891	0.00026017	-0.19455	-9.9459E-05	0.31436	0.00016071	511.2347984031331	36.706	1.6767	36.706	36.358	38.034	0					179	59	5	0	0	0	6.5311E-06	5	7481	7434;7481;7523;7567;7740		166.45	118.1	1	7615100			50443	4216	28847	28848	61562;61563;61564;61565;61566	61563					-0.05414798236131446
TYDKGYQF	8	Unmodified	_TYDKGYQF_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.23504638671875	2	511.234907	1020.45526	0.388	0.00019836	-0.093531	-4.7817E-05	0.29447	0.00015054	511.23484030224313	36.55	1.762	36.632	36.331	38.093	0.082359					188	63	5	0	0	0	6.5311E-06	3	7438	7393;7438;7481		166.45	118.1	1	8711200			50444	4216	28847	28848	61567;61568;61569	61568					-0.05414798236131446
TYDKGYQF	8	Unmodified	_TYDKGYQF_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	511.234907	1020.45526	0.64328	0.00032887	-0.32631	-0.00016682	0.31697	0.00016205	511.2347318894409	36.596	1.9764	36.689	36.339	38.316	0.093018	0.013135	-0.00010927	NaN	166.45	185	71	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7876800			50445	4216	28847	28848							-0.05414798236131446
TYDNVHQQF	9	Unmodified	_TYDNVHQQF_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.2598876953125	2	576.259445	1150.50434	0.12272	7.0721E-05	0.35148	0.00020254	0.4742	0.00027326	576.2597836196338	33.127	2.0859	33.127	32.782	34.868	0					223	74	5	0	0	0	9.9647E-43	7	6377	6328;6377;6420;6470;6516;6642;6666		275.79	172.04	1	12566000			50446	4169	28848	28849	61570;61571;61572;61573;61574;61575;61576	61571					-0.06489509947186889
TYDNVHQQF	9	Unmodified	_TYDNVHQQF_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.2598876953125	2	576.259445	1150.50434	0.29944	0.00017255	0.082885	4.7763E-05	0.38232	0.00022032	576.2596418522199	32.962	2.0389	33.017	32.704	34.743	0.055309					213	73	5	0	0	0	1.1647E-32	7	6375	6287;6333;6375;6420;6471;6558;6611		257.82	154.07	1	13591000			50447	4169	28848	28849	61577;61578;61579;61580;61581;61582;61583	61579					-0.06489509947186889
TYDNVHQQF	9	Unmodified	_TYDNVHQQF_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2598876953125	2	576.259445	1150.50434	0.17016	9.8055E-05	0.31761	0.00018302	0.48776	0.00028108	576.2597886585454	33.021	1.9145	33.076	32.791	34.706	0.054371					202	68	5	0	0	0	1.1647E-32	5	6349	6301;6349;6399;6454;6550		257.82	154.07	1	15838000			50448	4169	28848	28849	61584;61585;61586;61587;61588	61585					-0.06489509947186889
TYDPYDREL	9	Unmodified	_TYDPYDREL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.2682495117188	2	586.266936	1170.51932	0.43256	0.0002536	1.5366	0.00090086	1.9692	0.0011545	586.2679367456597	70.694	0.72231	70.669	70.437	71.159	-0.024872					50	25	3	0	0	0	0.12642	1	17926	17926		34.402	4.1769	1	531460			50449	12810	28849	28850	61589	61589					-0.05912062869856527
TYDRRTNIT	9	Unmodified	_TYDRRTNIT_					0	0	0		ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.266357421875	2	570.293819	1138.57309	0.40664	0.0002319	-0.98006	-0.00055892	-0.57342	-0.00032702	570.2929783022965	90.499	1.1175	90.59	89.804	90.921	0.090675					118	86	3	0	0	0	0.25526	1	23930	23930		7.9102	0.62092	1	200480			50450	8670	28850	28851	61590	61590					0.009341543525124507
TYDRVESLF	9	Unmodified	_TYDRVESLF_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7451171875	2	565.279846	1128.54514	0.91068	0.00051479	-0.48673	-0.00027514	0.42396	0.00023965	565.2796646305414	56.395	0.83673	56.376	56.107	56.944	-0.019077					44	30	2	0	0	0	0.17696	1	13617	13617		36.506	17.249	1	805480			50451	4955	28851	28852	61591	61591					-0.013991686275630855
TYDRVESLF	9	Unmodified	_TYDRVESLF_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	565.279846	1128.54514	0.8981	0.00050768	-0.61196	-0.00034593	0.28614	0.00016175	565.7807593493991	56.024	0.84219	56.095	55.854	56.696	0.070885	-0.14013	-7.6851E-05	NaN	36.506	43	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	908590			50452	4955	28851	28852							-0.013991686275630855
TYDSVTDKF	9	Unmodified	_TYDSVTDKF_					0	0	0		nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34;ENST00000463046.5_1_2:61463458-61483580:-|nuORF	nc|ENSG00000115464|Q70CQ2-2|USP34	nc|ENSG00000115464|Q70CQ2-2|USP34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2511596679688	2	538.250754	1074.48696	0.35324	0.00019013	0.19491	0.00010491	0.54816	0.00029505	538.2507673000694	41.466	0.962	41.466	40.634	41.596	0					56	35	3	0	0	0	0.0044119	1	8958	8958		91.085	52.909	1	1987300			50453	2650	28852	28853	61592	61592					-0.047308502728583335
TYDSVTDKF	9	Unmodified	_TYDSVTDKF_					0	0	0		nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34;ENST00000463046.5_1_2:61463458-61483580:-|nuORF	nc|ENSG00000115464|Q70CQ2-2|USP34	nc|ENSG00000115464|Q70CQ2-2|USP34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2987670898438	2	538.250754	1074.48696	0.37932	0.00020417	0.40531	0.00021816	0.78464	0.00042233	538.2508501573257	41.115	1.0369	41.205	40.445	41.482	0.090248					75	38	3	0	0	0	0.00028234	1	8826	8826		143.91	98.21	1	1591800			50454	2650	28852	28853	61593	61593					-0.047308502728583335
TYDSVTDKF	9	Unmodified	_TYDSVTDKF_					0	0	0		nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;nc|ENSG00000115464|Q70CQ2-3|USP34;ENST00000463046.5_1_2:61463458-61483580:-|nuORF	nc|ENSG00000115464|Q70CQ2-2|USP34	nc|ENSG00000115464|Q70CQ2-2|USP34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2508544921875	2	538.250754	1074.48696	0.31704	0.00017065	0.47694	0.00025671	0.79398	0.00042736	538.2508860201481	40.989	1.0828	41.086	40.365	41.448	0.096626					78	39	3	0	0	0	4.9907E-06	1	8765	8765		143.91	98.21	1	1783300			50455	2650	28852	28853	61594	61594					-0.047308502728583335
TYDWSKNFE	9	Unmodified	_TYDWSKNFE_					0	0	0			REV__nc|ENSG00000168502|Q9Y4B5|MTCL1	REV__nc|ENSG00000168502|Q9Y4B5|MTCL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7333984375	2	595.261653	1188.50875	0.37038	0.00022047	2.2346	0.0013302	2.605	0.0015506	595.7641072849809	76.712	0.44067	76.765	76.592	77.033	0.053421					24	15	3	0	0	0	0.25526	1	19819	19819		7.9102	2.6133	1	123350	+		50456	17465	28853	28854	61595	61595					-0.07796045524264628
TYDWSKNFE	9	Unmodified	_TYDWSKNFE_					0	0	0			REV__nc|ENSG00000168502|Q9Y4B5|MTCL1	REV__nc|ENSG00000168502|Q9Y4B5|MTCL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	595.261653	1188.50875	0.63422	0.00037753	1.5754	0.00093779	2.2096	0.0013153	595.7640715060959	76.814	0.59299	76.782	76.452	77.045	-0.03138	0.0085384	-0.00035117	NaN	7.9102	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140340	+		50457	17465	28853	28854							-0.07796045524264628
TYDYNFHSF	9	Unmodified	_TYDYNFHSF_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.2490234375	2	597.248546	1192.48254	0.72737	0.00043442	0.47945	0.00028635	1.2068	0.00072077	597.2486203771548	54.065	1.1428	54.065	53.749	54.891	0					146	41	6	0	0	0	8.5057E-24	4	12822	12775;12822;12864;12915		233.47	195.5	1	9702800			50458	2730	28854	28855	61596;61597;61598;61599	61597					-0.10600314695761881
TYDYNFHSF	9	Unmodified	_TYDYNFHSF_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.2490234375	2	597.248546	1192.48254	0.57726	0.00034477	0.33812	0.00020194	0.91538	0.00054671	597.2487031219374	53.996	0.86887	54.055	53.743	54.612	0.058708					112	32	5	0	0	0	7.3424E-17	3	12797	12748;12797;12846		218.2	192.8	1	10036000			50459	2730	28854	28855	61600;61601;61602	61601					-0.10600314695761881
TYDYNFHSF	9	Unmodified	_TYDYNFHSF_					0	0	0		nc|ENSG00000116539|Q9NR48|ASH1L;ENSG00000116539|ENST00000392403|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.2490844726562	2	597.248546	1192.48254	0.63493	0.00037921	1.6845	0.0010061	2.3195	0.0013853	597.2499374587542	54.417	1.2354	54.401	54.057	55.293	-0.015923					148	44	5	0	0	0	8.5057E-24	3	12938	12887;12938;12984		233.47	161.55	1	10549000			50460	2730	28854	28855	61603;61604;61605	61604					-0.10600314695761881
TYEAQFFGF	9	Unmodified	_TYEAQFFGF_					0	0	0		ENSG00000167842|ENST00000611091|MIS12	ENSG00000167842|ENST00000611091|MIS12	ENSG00000167842|ENST00000611091|MIS12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.250732421875	2	555.250557	1108.48656	0.31326	0.00017394	0.16729	9.289E-05	0.48055	0.00026683	555.250557810265	81.799	1.1089	81.799	81.204	82.313	0					137	44	5	0	0	0	5.6213E-07	4	21323	21274;21323;21369;21421		158.2	109.86	1	2091200			50461	6216	28855	28856	61606;61607;61608;61609	61607					-0.06334225202044763
TYEAQFFGF	9	Unmodified	_TYEAQFFGF_					0	0	0		ENSG00000167842|ENST00000611091|MIS12	ENSG00000167842|ENST00000611091|MIS12	ENSG00000167842|ENST00000611091|MIS12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2506713867188	2	555.250557	1108.48656	0.1058	5.8747E-05	0.25836	0.00014345	0.36416	0.0002022	555.2506493787606	81.693	1.1797	81.762	81.417	82.597	0.068993					139	50	4	0	0	0	1.8535E-07	3	21292	21247;21292;21333		172.91	115.44	1	2237000			50462	6216	28855	28856	61610;61611;61612	61611					-0.06334225202044763
TYEAQFFGF	9	Unmodified	_TYEAQFFGF_					0	0	0		ENSG00000167842|ENST00000611091|MIS12	ENSG00000167842|ENST00000611091|MIS12	ENSG00000167842|ENST00000611091|MIS12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2506103515625	2	555.250557	1108.48656	0.28175	0.00015644	0.074555	4.1396E-05	0.3563	0.00019784	555.2505388729112	81.795	1.2188	81.771	81.374	82.593	-0.02404					127	50	4	0	0	0	4.1361E-11	3	21310	21264;21310;21351		189.78	132.3	1	2510700			50463	6216	28855	28856	61613;61614;61615	61614					-0.06334225202044763
TYEELARAY	9	Unmodified	_TYEELARAY_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1;ENSG00000171587|ENST00000400454|DSCAM	nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000171587|ENST00000400454|DSCAM	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.8162841796875	2	558.272021	1114.52949	0.19479	0.00010874	0.61968	0.00034595	0.81446	0.00045469	558.2719132238165	40.68	0.53881	40.779	40.397	40.936	0.099407					39	19	4	0	0	0	0.25202	1	8656	8656		10.824	1.4765	1	249520			50464	6961;6559	28856	28857	61616	61616					-0.02319455144629501
TYEEVDELY	9	Unmodified	_TYEEVDELY_					0	0	0		MYL12B|p.D136Y|1|0.41|ENSG00000118680|chr18:3277824-3277824|G/T|missense_variant	MYL12B|p.D136Y|1|0.41|ENSG00000118680|chr18:3277824-3277824|G/T|missense_variant	MYL12B|p.D136Y|1|0.41|ENSG00000118680|chr18:3277824-3277824|G/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.2875366210938	2	580.753327	1159.4921	0.33153	0.00019254	-1.8154	-0.0010543	-1.4839	-0.00086177	580.7512987695106	74.972	0.29847	75.024	74.946	75.244	0.052361					15	10	2	0	0	0	0.24739	1	19222	19222		13.508	0	1	124270			50465	12550	28857	28858	61617	61617					-0.08126591200880284
TYEFAEDYTYF	11	Unmodified	_TYEFAEDYTYF_					0	0	0		ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2342834472656	3	483.534602	1447.58198	0.34019	0.0001645	0.26574	0.00012849	0.60593	0.00029299	483.8693264392584	44.391	0.086849	44.466	44.389	44.475	0.075047					4	2	2	0	0	0	0.33287	1	9828	9828		1.3296	0	1	35526			50466	1282	28858	28859	61618	61618					-0.1239096159233668
TYEFDSVGTF	10	Unmodified	_TYEFDSVGTF_					0	0	0			REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.2739868164062	2	583.256037	1164.49752	0.13722	8.0036E-05	0.031602	1.8432E-05	0.16882	9.8468E-05	583.2560625184135	61.224	0.57079	61.224	61.052	61.623	0					35	21	2	0	0	0	0.21644	1	15025	15025		30.637	4.3684	1	478180	+		50467	16176	28859	28860	61619	61619					-0.07814867618412791
TYEFDSVGTF	10	Unmodified	_TYEFDSVGTF_					0	0	0			REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.2745971679688	2	583.256037	1164.49752	0.03357	1.958E-05	0.14838	8.6542E-05	0.18195	0.00010612	583.2559512964302	61.2	0.45178	61.297	61.14	61.592	0.096985					27	16	2	0	0	0	0.21644	2	14999	14999;15081		30.637	5.2372	1	475320	+		50468	16176	28859	28860	61620;61621	61620					-0.07814867618412791
TYEFDSVGTF	10	Unmodified	_TYEFDSVGTF_					0	0	0			REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.275146484375	2	583.256037	1164.49752	0.15031	8.7672E-05	0.12002	7.0005E-05	0.27034	0.00015768	583.2560569981118	61.278	0.56675	61.269	61.046	61.612	-0.0094566					29	20	2	0	0	0	0.15638	1	15053	15053		37.974	12.575	1	561420	+		50469	16176	28859	28860	61622	61622					-0.07814867618412791
TYEFDSVGTF	10	Unmodified	_TYEFDSVGTF_					0	0	0			REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	583.256037	1164.49752	0.03357	1.958E-05	0.14838	8.6542E-05	0.18195	0.00010612	583.2559512964302	61.2	0.45178	61.297	61.14	61.592	0.096985	0.034087	3.78E-05	NaN	37.974	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475320	+		50470	16176	28859	28860							-0.07814867618412791
TYEFLQEHF	9	Unmodified	_TYEFLQEHF_					0	0	0		nc|ENSG00000155287|Q96A46-3|SLC25A28;nc|ENSG00000155287|Q96A46-2|SLC25A28;ENSG00000155287|ENST00000370495|SLC25A28	nc|ENSG00000155287|Q96A46-3|SLC25A28	nc|ENSG00000155287|Q96A46-3|SLC25A28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.8628845214844	3	405.188989	1212.54514	-0.062801	-2.5446E-05	-0.0013489	-5.4655E-07	-0.06415	-2.5993E-05	405.5229917860247	58.459	0.19386	58.55	58.418	58.612	0.091305					8	6	2	0	0	0	0.25992	1	14167	14167		4.5289	4.389	1	82397			50471	5166	28860	28861	61623	61623					-0.05263168627584491
TYEGIFKTL	9	Unmodified	_TYEGIFKTL_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.V1010Cfs*42|1|0.18|ENSG00000168488|chr16:28836062-28836062|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000561539.1_1_16:28836974-28837213:+|nuORF;ENST00000566080.1_1_16:28837054-28837213:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.7828979492188	2	536.289682	1070.56481	0.36548	0.000196	1.2039	0.00064565	1.5694	0.00084165	536.2900926910964	59.428	1.0701	59.428	58.8	59.87	0					63	37	4	0	0	0	0.0028032	1	14484	14484		103.82	77.555	1	1139900			50472	64	28861	28862	61624	61624					0.0323520738318166
TYEGIFKTL	9	Unmodified	_TYEGIFKTL_					0	0	0		nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;ATXN2L|p.V1010Cfs*42|1|0.18|ENSG00000168488|chr16:28836062-28836062|G/-|frameshift_variant;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000561539.1_1_16:28836974-28837213:+|nuORF;ENST00000566080.1_1_16:28837054-28837213:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	nc|ENSG00000168488|Q8WWM7-6|ATXN2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2901611328125	2	536.289682	1070.56481	0.31594	0.00016943	1.0066	0.00053981	1.3225	0.00070925	536.2901093863838	59.246	0.83691	59.338	59.015	59.852	0.091305					45	29	3	0	0	0	0.00047355	1	14401	14401		125.04	92.732	1	1511800			50473	64	28861	28862	61625	61625					0.0323520738318166
TYEIGIVRQ	9	Unmodified	_TYEIGIVRQ_					0	0	0		nc|ENSG00000133657|Q9H7F0-2|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3;ATP13A3|p.T754Ifs*18|1|0.35|ENSG00000133657|chr3:194431877-194431878|-/TCAA|frameshift_variant	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	nc|ENSG00000133657|Q9H7F0-2|ATP13A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2667236328125	2	539.798206	1077.58186	0.4718	0.00025468	0.59328	0.00032025	1.0651	0.00057493	539.7987719542498	68.151	0.46483	68.223	67.97	68.435	0.072632					23	16	2	0	0	0	0.24688	1	17129	17129		14.838	2.5976	1	198160			50474	3721	28862	28863	61626	61626					0.0461712798901317
TYEKFFGLL	9	Unmodified	_TYEKFFGLL_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.301025390625	2	559.30005	1116.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.952	1	73.922	73.422	74.422	-0.030655								0	0	0	0.074952	1	18912	18912		53.404	30.668	1				50475	5690	28863	28864	61627	61627					0.031917977628836525
TYERGTYYF	9	Unmodified	_TYERGTYYF_					0	0	0		nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.2722778320312	2	600.272021	1198.52949	0.48105	0.00028876	-0.19447	-0.00011673	0.28659	0.00017203	600.2718432562458	46.075	0.49009	46.075	45.86	46.35	0					40	17	3	0	0	0	0.032589	1	10346	10346		59.368	45.462	1	637980			50476	2370	28864	28865	61628	61628					-0.061834551446281694
TYERGTYYF	9	Unmodified	_TYERGTYYF_					0	0	0		nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.2719116210938	2	600.272021	1198.52949	0.50414	0.00030262	-0.25182	-0.00015116	0.25232	0.00015146	600.2719830439743	45.668	0.73344	45.727	45.475	46.209	0.059837					52	25	3	0	0	0	0.026579	2	10252	10200;10252		61.602	43.229	1	814100			50477	2370	28864	28865	61629;61630	61630					-0.061834551446281694
TYERGTYYF	9	Unmodified	_TYERGTYYF_					0	0	0		nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	nc|ENSG00000111596|Q9NZN8-3|CNOT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.2723999023438	2	600.272021	1198.52949	0.55142	0.000331	0.029475	1.7693E-05	0.58089	0.00034869	600.2719590228509	45.643	0.74047	45.708	45.487	46.227	0.065048					44	26	2	0	0	0	0.04299	2	10200	10200;10285		55.503	38.39	1	548360			50478	2370	28864	28865	61631;61632	61631					-0.061834551446281694
TYESIFSHF	9	Unmodified	_TYESIFSHF_					0	0	0		ENST00000530761.5_1_11:117857521-117870353:+|nuORF;ENSG00000110324|ENST00000227752|IL10RA	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7613525390625	2	565.761289	1129.50803	0.096338	5.4504E-05	0.19993	0.00011311	0.29626	0.00016761	565.7613361015233	64.971	0.98711	64.971	64.647	65.634	0					101	35	4	0	0	0	3.1560000000000002E-24	3	16205	16140;16155;16205		243.74	154.31	1	2346700			50479	2304	28865	28866	61633;61634;61635	61635					-0.05154840173327102
TYESIFSHF	9	Unmodified	_TYESIFSHF_					0	0	0		ENST00000530761.5_1_11:117857521-117870353:+|nuORF;ENSG00000110324|ENST00000227752|IL10RA	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.7614135742188	2	565.761289	1129.50803	0.29968	0.00016955	-0.042915	-2.4279E-05	0.25676	0.00014527	565.761155359316	64.896	1.3691	64.985	64.604	65.973	0.088882					116	50	4	0	0	0	2.6052E-17	2	16132	16132;16180		223.6	134.18	1	2235800			50480	2304	28865	28866	61636;61637	61636					-0.05154840173327102
TYESIFSHF	9	Unmodified	_TYESIFSHF_					0	0	0		ENST00000530761.5_1_11:117857521-117870353:+|nuORF;ENSG00000110324|ENST00000227752|IL10RA	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.761474609375	2	565.761289	1129.50803	0.051899	2.9362E-05	0.26382	0.00014926	0.31572	0.00017862	565.7613506836707	64.951	1.1438	64.939	64.606	65.75	-0.011337					114	41	4	0	0	0	3.1560000000000002E-24	4	16157	16122;16157;16204;16227		243.74	154.31	1	3085200			50481	2304	28865	28866	61638;61639;61640;61641	61639					-0.05154840173327102
TYEVTLSVI	9	Unmodified	_TYEVTLSVI_					0	0	0		nc|ENSG00000107736|Q9H251-9|CDH23;nc|ENSG00000107736|Q9H251-7|CDH23;CDH23|p.N2695Kfs*9|1|0.17|ENSG00000107736|chr10:71805868-71805868|C/-|frameshift_variant;nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23	nc|ENSG00000107736|Q9H251-9|CDH23	nc|ENSG00000107736|Q9H251-9|CDH23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7814331054688	2	512.78169	1023.54883	0.41547	0.00021305	-0.20266	-0.00010392	0.21281	0.00010913	512.7815539850823	85.766	1.0062	85.757	85.38	86.386	-0.0090027					93	37	3	0	0	0	0.0085732	1	22486	22486		81.613	10.479	1	981540			50482	103	28866	28867	61642	61642					0.0379950114629537
TYFAELEFP	9	Unmodified	_TYFAELEFP_					0	0	0			REV__ENSG00000164070|ENST00000296464|HSPA4L	REV__ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.76708984375	2	558.76604	1115.51753	0.3195	0.00017853	3.3898	0.0018941	3.7093	0.0020727	558.7673118313771	49.65	0.51825	49.695	49.489	50.007	0.044891					39	19	3	0	0	0	0.20344	1	11470	11470		23.148	1.4018	1	626250	+		50483	17122	28867	28868	61643	61643					-0.03561071887793332
TYFAELEFP	9	Unmodified	_TYFAELEFP_					0	0	0			REV__ENSG00000164070|ENST00000296464|HSPA4L	REV__ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	558.76604	1115.51753	0.34691	0.00019384	3.2785	0.0018319	3.6254	0.0020258	558.7672702217681	49.698	0.56634	49.698	49.434	50.001	0	-0.0014326	-2.7776E-05	NaN	23.148	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443550	+		50484	17122	28867	28868							-0.03561071887793332
TYFAELEFP	9	Unmodified	_TYFAELEFP_					0	0	0			REV__ENSG00000164070|ENST00000296464|HSPA4L	REV__ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	558.76604	1115.51753	0.20881	0.00011667	3.2553	0.001819	3.4641	0.0019356	558.7674215241661	49.685	0.50605	49.706	49.483	49.989	0.020691	0.006049	-5.3683E-05	NaN	23.148	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	636410	+		50485	17122	28867	28868							-0.03561071887793332
TYFDIGVYLS	10	Unmodified	_TYFDIGVYLS_					0	0	0			REV__ENST00000419827.2_1_7:10491071-10492091:+|nuORF	REV__ENST00000419827.2_1_7:10491071-10492091:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.7556762695312	2	589.292422	1176.57029	0.5666	0.00033389	-2.0419	-0.0012033	-1.4753	-0.00086938	589.2903619576384	56.617	0.10447	56.696	56.652	56.756	0.078674					5	3	2	0	0	0	0.3156	1	13602	13602		10.824	2.2306	1	103040	+		50486	20845	28868	28869	61644	61644					-0.01093113825004366
TYFDKNYNL	9	Unmodified	_TYFDKNYNL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.2800903320312	2	589.279846	1176.54514	0.48842	0.00028782	-0.0095495	-5.6273E-06	0.47887	0.00028219	589.2798080679032	48.991	1.3892	48.991	48.749	50.138	0					127	50	4	0	0	0	2.973E-07	3	11276	11229;11276;11322		168.54	105.96	1	4770800			50487	2734	28869	28870	61645;61646;61647	61646					-0.03607168627581814
TYFDKNYNL	9	Unmodified	_TYFDKNYNL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.2800903320312	2	589.279846	1176.54514	0.33732	0.00019878	0.30845	0.00018176	0.64577	0.00038054	589.2798866317268	49.071	0.99946	49.116	48.851	49.85	0.044891					122	36	6	0	0	0	2.973E-07	3	11290	11238;11290;11339		168.54	96.615	1	4798000			50488	2734	28869	28870	61648;61649;61650	61649					-0.03607168627581814
TYFDKNYNL	9	Unmodified	_TYFDKNYNL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.2800903320312	2	589.279846	1176.54514	0.23526	0.00013864	0.18414	0.00010851	0.4194	0.00024715	589.2799681656558	48.928	1.0773	48.96	48.71	49.787	0.032043					120	38	5	0	0	0	6.549E-06	3	11249	11197;11249;11300		155.95	93.381	1	4339500			50489	2734	28869	28870	61651;61652;61653	61652					-0.03607168627581814
TYFDNIVAI	9	Unmodified	_TYFDNIVAI_					0	0	0		nc|ENSG00000112541|Q9Y233-1|PDE10A;nc|ENSG00000112541|Q9Y233-2|PDE10A;ENSG00000112541|ENST00000539869|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3201293945312	2	528.274032	1054.53351	0.54747	0.00028922	-0.13438	-7.0991E-05	0.41309	0.00021822	528.2736862651556	79.721	0.65628	79.721	79.441	80.097	0					36	16	3	0	0	0	0.15943	1	20672	20672		39.95	14.55	1	160180			50490	2441	28870	28871	61654	61654					0.008426343491009902
TYFDNIVAI	9	Unmodified	_TYFDNIVAI_					0	0	0		nc|ENSG00000112541|Q9Y233-1|PDE10A;nc|ENSG00000112541|Q9Y233-2|PDE10A;ENSG00000112541|ENST00000539869|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8135986328125	2	528.274032	1054.53351	0.48688	0.00025721	-0.11915	-6.2943E-05	0.36773	0.00019426	528.2738114742557	79.619	0.59445	79.68	79.353	79.947	0.061417					41	21	3	0	0	0	0.17242	1	20651	20651		36.127	7.6402	1	176120			50491	2441	28870	28871	61655	61655					0.008426343491009902
TYFDNIVAI	9	Unmodified	_TYFDNIVAI_					0	0	0		nc|ENSG00000112541|Q9Y233-1|PDE10A;nc|ENSG00000112541|Q9Y233-2|PDE10A;ENSG00000112541|ENST00000539869|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	nc|ENSG00000112541|Q9Y233-1|PDE10A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.818359375	2	528.274032	1054.53351	0.57299	0.00030269	-0.657	-0.00034708	-0.08401	-4.438E-05	528.2733527696233	79.759	0.47642	79.73	79.471	79.947	-0.028923					36	17	3	0	0	0	0.13898	1	20675	20675		43.858	3.901	1	189570			50492	2441	28870	28871	61656	61656					0.008426343491009902
TYFEDPLTF	9	Unmodified	_TYFEDPLTF_					0	0	0		CYP46A1|p.N412K|1|0.3|ENSG00000036530|chr14:99725450-99725450|C/A|missense_variant;nc|ENSG00000036530|Q9Y6A2-3|CYP46A1;nc|ENSG00000036530|Q9Y6A2-2|CYP46A1;ENSG00000036530|ENST00000261835|CYP46A1	CYP46A1|p.N412K|1|0.3|ENSG00000036530|chr14:99725450-99725450|C/A|missense_variant	CYP46A1|p.N412K|1|0.3|ENSG00000036530|chr14:99725450-99725450|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.330078125	2	566.763497	1131.51244	0.32956	0.00018679	0.94101	0.00053333	1.2706	0.00072012	566.7639257049871	82.242	0.49427	82.218	81.831	82.325	-0.02404					32	18	2	0	0	0	0.16284	1	21406	21406		30.637	19.813	1	1437200			50493	255	28871	28872	61657	61657					-0.04805375750447638
TYFEKNFNL	9	Unmodified	_TYFEKNFNL_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.2903442382812	2	588.290214	1174.56587	0.99204	0.00058361	2.2366	0.0013158	3.2286	0.0018994	588.2898565575081	55.938	1.2293	55.938	55.594	56.823	0					118	44	6	0	0	0	0.0016724	2	13397	13356;13397		114.19	60.354	1	5371600			50494	2110	28872	28873	61658;61659	61659					-0.0144257824788383
TYFEKNFNL	9	Unmodified	_TYFEKNFNL_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.2904663085938	2	588.290214	1174.56587	0.75579	0.00044462	2.2383	0.0013168	2.9941	0.0017614	588.2899670026118	55.87	1.2024	55.941	55.592	56.794	0.070889					128	44	5	0	0	0	0.0011116	2	13372	13325;13372		121.35	67.513	1	5754300			50495	2110	28872	28873	61660;61661	61661					-0.0144257824788383
TYFEKNFNL	9	Unmodified	_TYFEKNFNL_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.2905883789062	2	588.290214	1174.56587	0.9364	0.00055088	2.3835	0.0014022	3.3199	0.0019531	588.2899964363133	56.188	1.2656	56.169	55.824	57.09	-0.019081					135	45	6	0	0	0	0.0011116	2	13452	13403;13452		121.35	67.513	1	7925400			50496	2110	28872	28873	61662;61663	61663					-0.0144257824788383
TYFFTAVLI	9	Unmodified	_TYFFTAVLI_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.797119140625	2	537.797143	1073.57973	0.28158	0.00015143	-1.7811	-0.00095787	-1.4995	-0.00080643	537.797299282431	95.231	1.1055	95.231	94.623	95.728	0					221	103	3	0	0	0	0.015402	1	25416	25416		71.134	31.184	1	205440			50497	451	28873	28874	61664	61664					0.04588699251212347
TYFFTAVLI	9	Unmodified	_TYFFTAVLI_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7974243164062	2	537.797143	1073.57973	0.30349	0.00016322	-1.2863	-0.00069176	-0.98279	-0.00052854	537.7973517398958	95.058	1.0373	95.141	94.669	95.707	0.082779					180	91	3	0	0	0	0.0022761	1	25365	25365		108	54.164	1	270680			50498	451	28873	28874	61665	61665					0.04588699251212347
TYFFTAVLI	9	Unmodified	_TYFFTAVLI_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7974243164062	2	537.797143	1073.57973	0.57582	0.00030968	-1.3812	-0.00074278	-0.80533	-0.0004331	537.7971526936807	95.183	1.0752	95.181	94.745	95.82	-0.0020142					184	99	4	0	0	0	0.0085732	2	25424	25424;25463		81.613	43.462	1	281790			50499	451	28873	28874	61666;61667	61666					0.04588699251212347
TYFKRHKR	8	Unmodified	_TYFKRHKR_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.7637939453125	2	568.327799	1134.64105	0.43924	0.00024964	-1.2112	-0.00068835	-0.77195	-0.00043872	568.3270558401956	30.142	0.67879	30.17	29.901	30.58	0.027946					36	21	2	0	0	0	0.34353	1	5428	5428		4.756	2.1785	1	220450	+		50500	19094	28874	28875	61668	61668					0.07911068793850973
TYFLIVCLLF	10	Unmodified	_TYFLIVCLLF_					0	0	0			REV__ENSG00000203756|ENST00000368143|TMEM244	REV__ENSG00000203756|ENST00000368143|TMEM244	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.3214721679688	2	616.343403	1230.67225	0.30314	0.00018684	1.236	0.00076182	1.5392	0.00094866	616.3438622903509	46.48	0.65833	46.532	46.326	46.984	0.052574					51	23	3	0	0	0	0.28434	1	10539	10539		19.257	1.1106	1	1094100	+		50501	18907	28875	28876	61669	61669					0.0661446099306886
TYFRETDALF	10	Unmodified	_TYFRETDALF_					0	0	0			REV__ENSG00000055130|ENST00000325222|CUL1	REV__ENSG00000055130|ENST00000325222|CUL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.3245849609375	2	631.806228	1261.5979	0.30073	0.00019	0.26881	0.00016984	0.56954	0.00035984	631.8061900545143	66.687	0.48999	66.673	66.433	66.923	-0.013588					44	17	4	0	0	0	0.31867	1	16717	16717		18.146	3.3081	1	330690	+		50502	13590	28876	28877	61670	61670					-0.022432105647794742
TYFRETDALF	10	Unmodified	_TYFRETDALF_					0	0	0			REV__ENSG00000055130|ENST00000325222|CUL1	REV__ENSG00000055130|ENST00000325222|CUL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	631.806228	1261.5979	0.33145	0.00020941	1.0204	0.00064468	1.3518	0.00085409	632.3089168634118	66.533	0.47179	66.616	66.354	66.826	0.083832	-0.028337	0.00067064	NaN	18.146	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203790	+		50503	13590	28876	28877							-0.022432105647794742
TYFRFQEEI	9	Unmodified	_TYFRFQEEI_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.801025390625	2	616.800946	1231.58734	0.15396	9.4963E-05	0.18116	0.00011174	0.33512	0.0002067	616.8009579876516	59.111	1.1585	59.111	58.739	59.897	0					117	40	5	0	0	0	1.3973E-05	4	14384	14335;14384;14436;14503		154.75	102.48	1	3217900			50504	3012	28877	28878	61671;61672;61673;61674	61672					-0.019191932191688466
TYFRFQEEI	9	Unmodified	_TYFRFQEEI_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.8009643554688	2	616.800946	1231.58734	0.17298	0.00010669	0.17985	0.00011093	0.35283	0.00021763	616.8009536853197	58.908	1.1178	58.999	58.677	59.795	0.091301					115	39	4	0	0	0	3.4262E-07	3	14328	14279;14328;14379		166.77	114.5	1	3447300			50505	3012	28877	28878	61675;61676;61677	61676					-0.019191932191688466
TYFRFQEEI	9	Unmodified	_TYFRFQEEI_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.801025390625	2	616.800946	1231.58734	0.32538	0.00020069	0.058315	3.5969E-05	0.38369	0.00023666	616.8008637631618	59.148	1.192	59.134	58.831	60.023	-0.014267					118	41	5	0	0	0	3.4202E-05	3	14345	14345;14394;14440		151.48	99.211	1	4405400			50506	3012	28877	28878	61678;61679;61680	61678					-0.019191932191688466
TYFRSKVKL	9	Unmodified	_TYFRSKVKL_					0	0	0		ENST00000487863.5_1_19:53056575-53056806:+|nuORF	ENST00000487863.5_1_19:53056575-53056806:+|nuORF	ENST00000487863.5_1_19:53056575-53056806:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2799072265625	2	571.340041	1140.66553	0.30569	0.00017466	-3.6943	-0.0021107	-3.3886	-0.001936	571.3376679753874	52.733	0.29893	52.733	52.55	52.849	0					18	10	2	0	0	0	0.25526	1	12429	12429		7.9102	0	1	208230			50507	11126	28878	28879	61681	61681					0.10082284156715104
TYFRTTELF	9	Unmodified	_TYFRTTELF_					0	0	0		ENST00000432293.2_1_7:35942780-35943926:+|nuORF	ENST00000432293.2_1_7:35942780-35943926:+|nuORF	ENST00000432293.2_1_7:35942780-35943926:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.7554931640625	2	589.298039	1176.58152	0.86125	0.00050753	1.5315	0.00090251	2.3928	0.00141	589.2998544817646	56.28	0.15666	56.28	56.241	56.398	0					8	5	2	0	0	0	0.19839	1	13518	13518		28.487	14.581	1	463950			50508	10479	28879	28880	61682	61682					0.00029708269130424014
TYFSAPGVMNF	11	Oxidation (M)	_TYFSAPGVM(Oxidation (M))NF_		TYFSAPGVM(1)NF		TYFSAPGVM(62)NF	0	0	1		ENSG00000108349|ENST00000264645|CASC3	ENSG00000108349|ENST00000264645|CASC3	ENSG00000108349|ENST00000264645|CASC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.281494140625	2	625.281531	1248.54851	-0.009191	-5.747E-06	0.49076	0.00030686	0.48157	0.00030111	625.2816003627033	68.442	0.94032	68.513	68.078	69.018	0.071938					53	34	2	0	0	0	0.021087	1	17165	17165		61.602	41.187	1	168640			50509	2177	28880	28881	61683	61683		267			-0.0658224184521714
TYFSTPLLL	9	Unmodified	_TYFSTPLLL_					0	0	0		nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF	nc|ENSG00000146701|P40926-2|MDH2	nc|ENSG00000146701|P40926-2|MDH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7947998046875	2	527.794601	1053.57465	0.69371	0.00036614	-0.3762	-0.00019856	0.31751	0.00016758	527.7944417082797	86.172	1.5194	86.172	85.846	87.366	0					153	60	4	0	0	0	0.0011817	5	22680	22635;22680;22730;22769;22814		120.45	32.128	1	3592200			50510	4723	28881	28882	61684;61685;61686;61687;61688	61685					0.05000395388583456
TYFSTPLLL	9	Unmodified	_TYFSTPLLL_					0	0	0		nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF	nc|ENSG00000146701|P40926-2|MDH2	nc|ENSG00000146701|P40926-2|MDH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7947387695312	2	527.794601	1053.57465	0.53088	0.0002802	-0.21335	-0.0001126	0.31753	0.00016759	527.794506865917	86.064	1.9917	86.148	85.836	87.827	0.084251					173	85	5	0	0	0	0.0017972	5	22641	22596;22641;22684;22728;22775		112.59	30.107	1	3510400			50511	4723	28881	28882	61689;61690;61691;61692;61693	61690					0.05000395388583456
TYFSTPLLL	9	Unmodified	_TYFSTPLLL_					0	0	0		nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF	nc|ENSG00000146701|P40926-2|MDH2	nc|ENSG00000146701|P40926-2|MDH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7947998046875	2	527.794601	1053.57465	0.66747	0.00035229	-0.2941	-0.00015522	0.37338	0.00019707	527.7944561913341	86.163	1.4918	86.154	85.822	87.314	-0.0090027					144	59	4	0	0	0	0.0017972	5	22664	22616;22664;22710;22754;22804		112.59	26.384	1	3425500			50512	4723	28881	28882	61694;61695;61696;61697;61698	61695					0.05000395388583456
TYFTSGETF	9	Unmodified	_TYFTSGETF_					0	0	0		PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant;PCLO|p.G2496Afs*27|1|0.04|ENSG00000186472|chr7:82953466-82953467|-/CTTAAATTTAGTGACTTCAG|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO	PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant	PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.844970703125	2	526.732197	1051.44984	0.6263	0.00032989	0.20823	0.00010968	0.83452	0.00043957	526.7322342352834	58.581	0.35175	58.581	58.387	58.739	0					20	11	2	0	0	0	0.10135	1	14170	14170		43.858	9.671	1	248870			50513	7621	28882	28883	61699	61699					-0.07382521818612986
TYFTSGETF	9	Unmodified	_TYFTSGETF_					0	0	0		PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant;PCLO|p.G2496Afs*27|1|0.04|ENSG00000186472|chr7:82953466-82953467|-/CTTAAATTTAGTGACTTCAG|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO	PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant	PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8453979492188	2	526.732197	1051.44984	0.49605	0.00026129	0.5423	0.00028565	1.0384	0.00054693	526.7323175613665	58.319	0.59301	58.404	58.222	58.815	0.085621					27	20	2	0	0	0	0.047851	1	14159	14159		61.357	35.016	1	203850			50514	7621	28882	28883	61700	61700					-0.07382521818612986
TYFTSGETF	9	Unmodified	_TYFTSGETF_					0	0	0		PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant;PCLO|p.G2496Afs*27|1|0.04|ENSG00000186472|chr7:82953466-82953467|-/CTTAAATTTAGTGACTTCAG|frameshift_variant;nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO	PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant	PCLO|p.L2497Hfs*9|1|0.05|ENSG00000186472|chr7:82953465-82953466|-/ATGA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	526.732197	1051.44984	0.73863	0.00038906	0.059056	3.1107E-05	0.79768	0.00042017	526.7322677084265	58.641	0.38991	58.627	58.47	58.86	-0.014267	0.089551	-0.00016383	NaN	52.268	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248520			50515	7621	28882	28883							-0.07382521818612986
TYFVSLLKDVS	11	Unmodified	_TYFVSLLKDVS_					0	0	0			REV__ENSG00000169484|ENST00000641793|OR4K14	REV__ENSG00000169484|ENST00000641793|OR4K14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	635.7655639648438	2	636.347729	1270.6809	0.48107	0.00030613	1.3009	0.00082783	1.782	0.001134	636.3485783709235	49.411	0.30777	49.411	49.292	49.6	0					17	10	2	0	0	0	0.32996	1	11419	11419		8.1555	0	1	172450	+		50516	17517	28883	28884	61701	61701					0.05639106163243923
TYFVVAVLELL	11	Unmodified	_TYFVVAVLELL_					0	0	0		ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT	ENSG00000165102|ENST00000379644|HGSNAT	ENSG00000165102|ENST00000379644|HGSNAT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8723754882812	2	633.87084	1265.72713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.11	1	119.14	118.64	119.64	0.026253								0	0	0	0.38203	1	30820	30820		0.30703	0	1				50517	5924	28884	28885	61702	61702					0.10489171065364644
TYFYFVQQ	8	Unmodified	_TYFYFVQQ_					0	0	0		ENST00000477858.1_1_6:46967961-46969328:-|nuORF	ENST00000477858.1_1_6:46967961-46969328:-|nuORF	ENST00000477858.1_1_6:46967961-46969328:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3356323242188	2	548.260925	1094.5073	0.3067	0.00016815	-3.0437	-0.0016687	-2.737	-0.0015006	548.2582175593964	22.293	0.31433	22.293	22.076	22.39	0					15	10	2	0	0	0	0.34131	1	3080	3080		12.532	1.7076	1	54942			50518	10963	28885	28886	61703	61703					-0.036176348223762034
TYFYFVQQ	8	Unmodified	_TYFYFVQQ_					0	0	0		ENST00000477858.1_1_6:46967961-46969328:-|nuORF	ENST00000477858.1_1_6:46967961-46969328:-|nuORF	ENST00000477858.1_1_6:46967961-46969328:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3356323242188	2	548.260925	1094.5073	0.29712	0.0001629	-2.6209	-0.0014369	-2.3237	-0.001274	548.2587677520935	22.255	0.34008	22.206	22.064	22.404	-0.049377					16	11	2	0	0	0	0.34367	1	3107	3107		4.3292	0.73274	1	41224			50519	10963	28885	28886	61704	61704					-0.036176348223762034
TYFYRPKT	8	Unmodified	_TYFYRPKT_					0	0	0			REV__ENST00000379095.4_1_15:90818360-90818948:+|nuORF	REV__ENST00000379095.4_1_15:90818360-90818948:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.298583984375	2	538.282192	1074.54983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.2	1	41.297	40.797	41.797	0.096626								0	0	0	0.35663	1	8851	8851		11.64	0.52583	1		+		50520	20526	28886	28887	61705	61705					0.01553760305864671
TYGAFLQKF	9	Unmodified	_TYGAFLQKF_					0	0	0		nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000465252.5_1_17:74079731-74080394:-|nuORF;ENST00000467586.5_1_17:74079731-74084011:-|nuORF	nc|ENSG00000182473|Q9UPT5-2|EXOC7;ENST00000467586.5_1_17:74079731-74084011:-|nuORF	nc|ENSG00000182473|Q9UPT5-2|EXOC7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.784912109375	2	537.784567	1073.55458	0.45487	0.00024462	-0.39675	-0.00021336	0.058127	3.126E-05	537.7845606843921	58.653	0.84567	58.744	58.393	59.238	0.091305					84	29	4	0	0	0	0.00011048	1	14188	14188		139.14	106.83	1	1499900			50521	7293;10824	28887	28888	61706	61706					0.02074644448634899
TYGAFLQKF	9	Unmodified	_TYGAFLQKF_					0	0	0		nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000465252.5_1_17:74079731-74080394:-|nuORF;ENST00000467586.5_1_17:74079731-74084011:-|nuORF	nc|ENSG00000182473|Q9UPT5-2|EXOC7;ENST00000467586.5_1_17:74079731-74084011:-|nuORF	nc|ENSG00000182473|Q9UPT5-2|EXOC7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	537.784567	1073.55458	0.50085	0.00026935	-0.55363	-0.00029773	-0.052779	-2.8384E-05	537.7845545897632	58.834	0.88652	58.834	58.439	59.326	0	-0.0077195	-5.569E-05	NaN	139.14	73	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1409000			50522	7293;10824	28887	28888							0.02074644448634899
TYGAFLQKF	9	Unmodified	_TYGAFLQKF_					0	0	0		nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000465252.5_1_17:74079731-74080394:-|nuORF;ENST00000467586.5_1_17:74079731-74084011:-|nuORF	nc|ENSG00000182473|Q9UPT5-2|EXOC7;ENST00000467586.5_1_17:74079731-74084011:-|nuORF	nc|ENSG00000182473|Q9UPT5-2|EXOC7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	537.784567	1073.55458	0.58758	0.00031599	-0.55366	-0.00029775	0.033921	1.8242E-05	537.7844883870227	58.961	0.81286	58.947	58.583	59.396	-0.014271	0.10494	-5.5719E-05	NaN	139.14	75	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1655300			50523	7293;10824	28887	28888							0.02074644448634899
TYGAKSDIIY	10	Unmodified	_TYGAKSDIIY_					0	0	0		nc|ENSG00000171105|P06213-2|INSR;ENSG00000171105|ENST00000302850|INSR	nc|ENSG00000171105|P06213-2|INSR	nc|ENSG00000171105|P06213-2|INSR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.3118896484375	2	565.790047	1129.56554	0.50093	0.00028342	0.77663	0.00043941	1.2776	0.00072283	565.7903198803851	48.356	0.29123	48.399	48.191	48.483	0.04332					13	10	2	0	0	0	0.3144	1	11000	11000		8.7454	0.58988	1	117220			50524	6512	28888	28889	61707	61707					0.005940020322668715
TYGAKSDIIY	10	Unmodified	_TYGAKSDIIY_					0	0	0		nc|ENSG00000171105|P06213-2|INSR;ENSG00000171105|ENST00000302850|INSR	nc|ENSG00000171105|P06213-2|INSR	nc|ENSG00000171105|P06213-2|INSR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	565.790047	1129.56554	0.75924	0.00042957	-0.43078	-0.00024373	0.32846	0.00018584	565.789524863835	48.356	0.3157	48.403	48.285	48.601	0.04752	0.014977	-0.001177	NaN	12.241	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163080			50525	6512	28888	28889							0.005940020322668715
TYGDAGLTYTF	11	Unmodified	_TYGDAGLTYTF_					0	0	0		ENSG00000189046|ENST00000429722|ALKBH2	ENSG00000189046|ENST00000429722|ALKBH2	ENSG00000189046|ENST00000429722|ALKBH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.7775268554688	2	604.777136	1207.53972	0.51387	0.00031078	0.41086	0.00024848	0.92473	0.00055926	604.7773873626099	68.408	0.88931	68.408	68.178	69.067	0					81	32	4	0	0	0	1.0468E-12	3	17281	17201;17232;17281		165.72	140.84	1	1187900			50526	7795	28889	28890	61708;61709;61710	61710					-0.05574892210051985
TYGDAGLTYTF	11	Unmodified	_TYGDAGLTYTF_					0	0	0		ENSG00000189046|ENST00000429722|ALKBH2	ENSG00000189046|ENST00000429722|ALKBH2	ENSG00000189046|ENST00000429722|ALKBH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.7777099609375	2	604.777136	1207.53972	0.44656	0.00027007	0.36862	0.00022293	0.81518	0.000493	604.7774655237288	68.345	0.74615	68.417	68.134	68.88	0.071938					68	27	3	0	0	0	6.9943E-14	3	17204	17188;17204;17254		179.17	154.29	1	1091100			50527	7795	28889	28890	61711;61712;61713	61712					-0.05574892210051985
TYGDAGLTYTF	11	Unmodified	_TYGDAGLTYTF_					0	0	0		ENSG00000189046|ENST00000429722|ALKBH2	ENSG00000189046|ENST00000429722|ALKBH2	ENSG00000189046|ENST00000429722|ALKBH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.7774658203125	2	604.777136	1207.53972	0.41454	0.0002507	0.478	0.00028908	0.89254	0.00053979	604.7775177185573	68.439	0.69815	68.42	68.197	68.895	-0.019157					56	24	3	0	0	0	1.4121E-12	2	17278	17230;17278		160.69	135.81	1	1191100			50528	7795	28889	28890	61714;61715	61715					-0.05574892210051985
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2803955078125	2	567.279315	1132.54408	0.31226	0.00017714	-0.34876	-0.00019785	-0.036509	-2.0711E-05	567.2800535449461	61.029	6.1114	61.029	60.548	66.659	0					818	224	8	0	0	0	1.6536E-07	32	14915	14869;14915;14959;15009;15058;15108;15158;15207;15249;15301;15348;15397;15444;15486;15529;15578;15627;15680;15730;15777;15818;15864;15916;15963;16012;16089;16298;16348;16399;16447;16497;16540		173.69	121.42	1	476840000			50529	4958	28890	28891	61716;61717;61718;61719;61720;61721;61722;61723;61724;61725;61726;61727;61728;61729;61730;61731;61732;61733;61734;61735;61736;61737;61738;61739;61740;61741;61742;61743;61744;61745;61746;61747	61717					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2799682617188	2	567.279315	1132.54408	0.2438	0.0001383	0.3125	0.00017728	0.5563	0.00031558	567.2794021429688	67.497	3.8808	67.497	66.659	70.54	0					211	140	2	0	0	0	0.0010968	3	17031	16981;17031;17079		121.53	66.761	1	947810			50530	4958	28890	28891	61748;61749;61750	61749					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2787475585938	2	567.279315	1132.54408	0.31765	0.0001802	-0.33526	-0.00019018	-0.017603	-9.9858E-06	567.2790104623291	74.27	2.7714	74.27	73.105	75.877	0					141	97	2	0	0	0	0.0024096	4	18928	18928;18980;19030;19056		106.94	60.919	1	643630			50531	4958	28890	28891	61751;61752;61753;61754	61751					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2794799804688	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.68	1	109.68	109.18	110.18	0								0	0	0	0.18053	1	28681	28681		27.629	11.782	1				50532	4958	28890	28891	61755	61755					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2779541015625	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.64	1	110.64	110.14	111.14	0								0	0	0	0.073524	1	28841	28841		53.833	26.949	1				50533	4958	28890	28891	61756	61756					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2788696289062	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.45	1	111.45	110.95	111.95	0								0	0	0	0.18053	1	28984	28984		27.629	7.1752	1				50534	4958	28890	28891	61757	61757					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2785034179688	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.57	1	111.57	111.07	112.07	0								0	0	0	0.094536	1	29012	29012		47.594	20.711	1				50535	4958	28890	28891	61758	61758					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2765502929688	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.79	1	114.79	114.29	115.29	0								0	0	0	0.24066	1	29769	29769		9.3831	2.66	1				50536	4958	28890	28891	61759	61759					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2799682617188	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.57	1	117.57	117.07	118.07	0								0	0	0	0.19932	1	30399	30399		22.736	7.898	1				50537	4958	28890	28891	61760	61760					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2796630859375	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.84	1	117.84	117.34	118.34	0								0	0	0	0.21673	1	30460	30460		17.113	6.289	1				50538	4958	28890	28891	61761	61761					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2793579101562	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.15	1	119.15	118.65	119.65	0								0	0	0	0.22666	1	30755	30755		13.906	3.0821	1				50539	4958	28890	28891	61762	61762					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.279296875	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.59	1	119.59	119.09	120.09	0								0	0	0	0.22666	1	30851	30851		13.906	3.0821	1				50540	4958	28890	28891	61763	61763					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3294677734375	2	567.279315	1132.54408	0.28524	0.00016181	1.6982	0.00096334	1.9834	0.0011252	567.280377721558	82.152	1.1305	82.152	81.28	82.41	0					69	45	2	0	0	0	0.12329	1	21232	21232		41.956	21.502	1	372580			50541	4958	28890	28891	61764	61764					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3298950195312	2	567.279315	1132.54408	0.45996	0.00026093	0.94948	0.00053862	1.4094	0.00079955	567.2797147060869	77.485	4.6307	77.485	77.09	81.72	0					295	186	2	0	0	0	0.12329	1	20606	20606		49.554	22.671	1	1264400			50542	4958	28890	28891	61765	61765					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2801513671875	2	567.279315	1132.54408	0.35103	0.00019913	-0.2924	-0.00016587	0.058624	3.3256E-05	567.2800746839515	60.93	6.5658	61.027	60.079	66.644	0.096985					846	240	8	0	0	0	4.984E-07	34	14882	14882;14899;14944;14994;15045;15095;15146;15188;15229;15275;15324;15373;15423;15472;15518;15567;15617;15665;15710;15715;15760;15808;15857;15907;15948;15998;16048;16099;16206;16253;16303;16312;16353;16401		160.69	108.42	1	532600000			50543	4958	28890	28891	61766;61767;61768;61769;61770;61771;61772;61773;61774;61775;61776;61777;61778;61779;61780;61781;61782;61783;61784;61785;61786;61787;61788;61789;61790;61791;61792;61793;61794;61795;61796;61797;61798;61799	61766					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.280029296875	2	567.279315	1132.54408	0.37857	0.00021476	0.19745	0.00011201	0.57603	0.00032677	567.2791993179758	67.454	4.7206	67.532	66.594	71.315	0.078041					361	169	3	0	0	0	0.0010968	6	16995	16946;16995;17054;17486;17931;17984		121.53	66.761	1	1120600			50544	4958	28890	28891	61800;61801;61802;61803;61804;61805	61801					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2794189453125	2	567.279315	1132.54408	0.27118	0.00015384	0.52173	0.00029597	0.79292	0.00044981	567.2794091178288	73.905	1.2077	73.957	73.116	74.324	0.052368					69	42	2	0	0	0	0.001957	2	18914	18914;18963		110.55	64.532	1	597700			50545	4958	28890	28891	61806;61807	61806					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.280029296875	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.75	1	110.74	110.24	111.24	-0.013939								0	0	0	0.11932	1	28873	28873		41.84	18.691	1				50546	4958	28890	28891	61808	61808					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2794189453125	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.42	1	111.4	110.9	111.9	-0.013939								0	0	0	0.12621	1	28991	28991		40.239	19.786	1				50547	4958	28890	28891	61809	61809					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2796020507812	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.61	1	117.58	117.08	118.08	-0.024147								0	0	0	0.22666	1	30433	30433		13.906	3.0821	1				50548	4958	28890	28891	61810	61810					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2786865234375	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.57	1	118.54	118.04	119.04	-0.024147								0	0	0	0.24066	1	30643	30643		9.3831	2.66	1				50549	4958	28890	28891	61811	61811					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.27880859375	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.69	1	118.67	118.17	119.17	-0.024147								0	0	0	0.24066	1	30670	30670		9.3831	2.66	1				50550	4958	28890	28891	61812	61812					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2783203125	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.99	1	119.97	119.47	120.47	-0.026039								0	0	0	0.2505	1	30960	30960		6.2058	2.2614	1				50551	4958	28890	28891	61813	61813					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2799072265625	2	567.279315	1132.54408	0.27549	0.00015628	-0.17502	-9.9285E-05	0.10047	5.6994E-05	567.2801322471357	61.013	6.3139	61.003	60.38	66.694	-0.0094566					800	231	4	0	0	0	1.6536E-07	30	15200	14921;14970;15017;15065;15113;15159;15200;15246;15288;15336;15385;15434;15484;15534;15584;15631;15682;15732;15788;15838;15885;15926;15980;16032;16076;16279;16328;16381;16425;16470		173.69	108.42	1	664420000			50552	4958	28890	28891	61814;61815;61816;61817;61818;61819;61820;61821;61822;61823;61824;61825;61826;61827;61828;61829;61830;61831;61832;61833;61834;61835;61836;61837;61838;61839;61840;61841;61842;61843	61820					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2800903320312	2	567.279315	1132.54408	0.21323	0.00012096	0.41993	0.00023822	0.63316	0.00035918	567.279317237032	67.576	4.7213	67.56	66.631	71.352	-0.016304					264	169	3	0	0	0	0.00019464	5	17007	17007;17055;17106;17939;17981		133.05	78.279	1	1095700			50553	4958	28890	28891	61844;61845;61846;61847;61848	61844					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2791137695312	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.868	1	73.837	73.337	74.337	-0.030655								0	0	0	2.5218E-06	1	18886	18886		118.07	63.295	1				50554	4958	28890	28891	61849	61849					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.279052734375	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.034	1	74.003	73.503	74.503	-0.030655								0	0	0	0.0040423	1	18937	18937		89.401	34.627	1				50555	4958	28890	28891	61850	61850					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.278564453125	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.185	1	74.154	73.654	74.654	-0.030655								0	0	0	0.00037335	1	18984	18984		106.94	60.919	1				50556	4958	28890	28891	61851	61851					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2796020507812	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.334	1	74.303	73.803	74.803	-0.030655								0	0	0	0.0040423	1	19030	19030		89.401	43.38	1				50557	4958	28890	28891	61852	61852					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.278076171875	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.98	1	109.99	109.49	110.49	0.0099411								0	0	0	0.055092	1	28767	28767		59.368	28.732	1				50558	4958	28890	28891	61853	61853					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2781982421875	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.41	1	111.42	110.92	111.92	0.01152								0	0	0	0.15832	1	29013	29013		32.786	12.332	1				50559	4958	28890	28891	61854	61854					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2788696289062	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.47	1	112.48	111.98	112.98	0.0131								0	0	0	0.24066	1	29272	29272		9.3831	2.66	1				50560	4958	28890	28891	61855	61855					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.279541015625	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.75	1	115.77	115.27	116.27	0.018738								0	0	0	0.20303	1	30058	30058		21.537	10.713	1				50561	4958	28890	28891	61856	61856					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2791137695312	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.24	1	116.26	115.76	116.76	0.020988								0	0	0	0.20303	1	30165	30165		21.537	7.6309	1				50562	4958	28890	28891	61857	61857					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.27978515625	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.41	1	119.44	118.94	119.94	0.027756								0	0	0	0.2505	1	30885	30885		6.2058	0.97511	1				50563	4958	28890	28891	61858	61858					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2794799804688	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.98	1	120.01	119.51	120.51	0.027756								0	0	0	0.22933	1	31016	31016		13.042	6.3193	1				50564	4958	28890	28891	61859	61859					-0.016893829964601537
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3297119140625	2	567.279315	1132.54408	0.53177	0.00030166	0.90924	0.00051579	1.441	0.00081745	567.279685473991	77.501	6.5094	77.469	76.049	82.558	-0.031334					325	253	2	0	0	0	0.067563	1	20528	20528		66.457	20.436	1	1436100			50565	4958	28890	28891	61860	61860					-0.016893829964601537
TYGGSWKF	8	Unmodified	_TYGGSWKF_					0	0	0		nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-3|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.78192138671875	2	473.226885	944.439217	0.41734	0.0001975	0.47437	0.00022449	0.89171	0.00042198	473.2271222314638	48.389	0.4015	48.433	48.294	48.695	0.043324					22	14	3	0	0	0	0.34039	1	11068	11068		15.847	3.3156	1	226610			50566	4712	28891	28892	61861	61861					-0.035224596823809406
TYGKPVTF	8	Unmodified	_TYGKPVTF_					0	0	0		ENST00000560910.5_1_15:102186874-102192564:-|nuORF;ENST00000559024.5_1_15:102186874-102192564:-|nuORF;nc|ENSG00000184277|Q9BRN9-2|TM2D3;ENSG00000184277|ENST00000333202|TM2D3	ENST00000560910.5_1_15:102186874-102192564:-|nuORF	ENST00000560910.5_1_15:102186874-102192564:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7933044433594	2	456.744911	911.475269	0.24316	0.00011106	-0.14134	-6.4557E-05	0.10181	4.6503E-05	456.74465317800104	36.875	0.62264	36.962	36.682	37.305	0.08741					34	22	2	0	0	0	0.32537	1	7560	7560		24.021	8.1734	1	190740			50567	7443	28892	28893	61862	61862					0.015989974944773166
TYGLAAAVF	9	Unmodified	_TYGLAAAVF_					0	0	0		nc|ENSG00000111275|P05091-2|ALDH2;ENST00000548536.1_1_12:112213467-112247376:+|nuORF;ENSG00000111275|ENST00000261733|ALDH2	nc|ENSG00000111275|P05091-2|ALDH2	nc|ENSG00000111275|P05091-2|ALDH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.79327392578125	2	456.744911	911.475269	0.45682	0.00020865	-0.25789	-0.00011779	0.19893	9.0859E-05	456.74462492153066	36.892	0.53748	36.985	36.764	37.302	0.093014					32	19	2	0	0	0	0.23783	1	7557	7557		18.135	0	1	200460			50568	2359	28893	28894	61863	61863					0.01598997494465948
TYGPITVTI	9	Unmodified	_TYGPITVTI_					0	0	0		ENSG00000172543|ENST00000307886|CTSW	ENSG00000172543|ENST00000307886|CTSW	ENSG00000172543|ENST00000307886|CTSW	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7847900390625	2	482.771126	963.527698	0.27717	0.00013381	0.3748	0.00018094	0.65197	0.00031475	482.7711142863172	68.964	1.0221	68.945	68.572	69.594	-0.019157					76	36	4	0	0	0	0.051692	1	17423	17423		52.268	6.2474	1	1154000			50569	6645	28894	28895	61864	61864					0.04447535837448413
TYGPITVTI	9	Unmodified	_TYGPITVTI_					0	0	0		ENSG00000172543|ENST00000307886|CTSW	ENSG00000172543|ENST00000307886|CTSW	ENSG00000172543|ENST00000307886|CTSW	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	482.771126	963.527698	0.24739	0.00011943	0.2266	0.00010939	0.47399	0.00022883	482.77119844821067	68.895	0.86923	68.895	68.616	69.485	0	-0.013871	-7.4284E-07	NaN	52.268	57	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1134400			50570	6645	28894	28895							0.04447535837448413
TYGPITVTI	9	Unmodified	_TYGPITVTI_					0	0	0		ENSG00000172543|ENST00000307886|CTSW	ENSG00000172543|ENST00000307886|CTSW	ENSG00000172543|ENST00000307886|CTSW	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	482.771126	963.527698	0.33286	0.00016069	0.1206	5.8224E-05	0.45346	0.00021892	482.7711410308416	68.815	0.87523	68.887	68.618	69.493	0.071938	-0.022286	-0.00010308	NaN	52.268	55	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1259000			50571	6645	28894	28895							0.04447535837448413
TYGPSFPAF	9	Unmodified	_TYGPSFPAF_					0	0	0		RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB	RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant	RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7346496582031	2	493.734543	985.454533	0.48871	0.0002413	0.017716	8.7469E-06	0.50643	0.00025004	493.734445188618	72.608	1.1729	72.608	72.295	73.468	0					126	42	4	0	0	0	0.0022761	3	18533	18486;18533;18580		108	75.88	1	2367100			50572	6455	28895	28896	61865;61866;61867	61866					-0.03877592885191916
TYGPSFPAF	9	Unmodified	_TYGPSFPAF_					0	0	0		RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB	RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant	RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7347412109375	2	493.734543	985.454533	0.48779	0.00024084	0.013989	6.9069E-06	0.50178	0.00024774	493.734435784812	72.56	1.3334	72.614	72.3	73.633	0.053833					132	48	4	0	0	0	0.0022761	3	18504	18461;18504;18545		108	75.88	1	2370700			50573	6455	28895	28896	61868;61869;61870	61869					-0.03877592885191916
TYGPSFPAF	9	Unmodified	_TYGPSFPAF_					0	0	0		RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB	RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant	RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.73480224609375	2	493.734543	985.454533	0.48825	0.00024107	0.038043	1.8783E-05	0.52629	0.00025985	493.7344411253171	72.684	1.2252	72.655	72.332	73.557	-0.029305					119	43	4	0	0	0	0.0017972	3	18485	18485;18531;18573		112.59	72.145	1	2400000			50574	6455	28895	28896	61871;61872;61873	61871					-0.03877592885191916
TYGVSFFLV	9	Unmodified	_TYGVSFFLV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2;TLN2|p.I2353Mfs*42|1|0.13|ENSG00000171914|chr15:62833559-62833559|T/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7738037109375	2	516.773668	1031.53278	0.38716	0.00020007	0.06236	3.2226E-05	0.44952	0.0002323	516.7736487716045	90.66	0.60629	90.66	90.369	90.976	0					113	47	3	0	0	0	0.013258	3	24057	24012;24057;24096		74.423	23.568	1	409340			50575	4024;6595	28896	28897	61874;61875;61876	61875					0.018278397000358382
TYGVSFFLV	9	Unmodified	_TYGVSFFLV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2;TLN2|p.I2353Mfs*42|1|0.13|ENSG00000171914|chr15:62833559-62833559|T/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7739868164062	2	516.773668	1031.53278	0.32261	0.00016672	0.21829	0.00011281	0.5409	0.00027953	516.7736967942013	90.506	0.55224	90.596	90.357	90.909	0.090668					106	44	3	0	0	0	0.037693	3	24000	23961;24000;24039		57.471	15.377	1	420150			50576	4024;6595	28896	28897	61877;61878;61879	61878					0.018278397000358382
TYGVSFFLV	9	Unmodified	_TYGVSFFLV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2;TLN2|p.I2353Mfs*42|1|0.13|ENSG00000171914|chr15:62833559-62833559|T/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7739868164062	2	516.773668	1031.53278	0.38577	0.00019936	0.072317	3.7371E-05	0.45809	0.00023673	516.7737036368912	90.664	0.6167	90.665	90.368	90.984	0.00039673					100	47	3	0	0	0	0.017871	3	23982	23982;24026;24069		67.344	16.489	1	424070			50577	4024;6595	28896	28897	61880;61881;61882	61880					0.018278397000358382
TYGYYRENS	9	Unmodified	_TYGYYRENS_					0	0	0			REV__nc|ENSG00000012223|P02788-2|LTF	REV__nc|ENSG00000012223|P02788-2|LTF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3697509765625	2	576.751453	1151.48835	0.42533	0.00024531	0.023044	1.3291E-05	0.44838	0.0002586	576.7513509317695	35.743	0.49207	35.826	35.598	36.09	0.082355					30	17	2	0	0	0	0.25202	1	7182	7182		10.824	2.9138	1	194390	+	+	50578	13259	28897	28898	61883	61883					-0.0813321618406917
TYHGVFVNI	9	Unmodified	_TYHGVFVNI_					0	0	0		ENST00000492514.1_1_21:38610748-38639601:-|nuORF;ENST00000475009.1_1_21:38610748-38639643:-|nuORF;ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;nc|ENSG00000157538|O14972-2|VPS26C;ENSG00000157538|ENST00000309117|VPS26C	ENST00000492514.1_1_21:38610748-38639601:-|nuORF	ENST00000492514.1_1_21:38610748-38639601:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.8056030273438	2	525.274367	1048.53418	0.4152	0.0002181	0.27169	0.00014271	0.68689	0.00036081	525.2745086646868	55.422	0.50931	55.422	55.198	55.707	0					28	18	2	0	0	0	0.23784	1	13247	13247		13.906	0	1	348160			50579	5312	28898	28899	61884	61884					0.01185473788791569
TYHIKNYII	9	Unmodified	_TYHIKNYII_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3057861328125	2	582.824224	1163.63389	0.66967	0.0003903	-0.1301	-7.5823E-05	0.53957	0.00031448	582.8242440608119	45.792	0.38371	45.792	45.476	45.86	0					21	13	2	0	0	0	0.21447	1	10232	10232		21.537	4.5947	1	274510			50580	1632	28899	28900	61885	61885					0.058622914027409934
TYHIKNYII	9	Unmodified	_TYHIKNYII_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3058471679688	2	582.824224	1163.63389	0.55046	0.00032082	0.065115	3.7951E-05	0.61558	0.00035877	582.8242250950016	45.401	0.51099	45.461	45.223	45.734	0.059834					28	17	2	0	0	0	0.17277	2	10108	10108;10163		27.629	9.8967	1	270790			50581	1632	28899	28900	61886;61887	61886					0.058622914027409934
TYHIKNYII	9	Unmodified	_TYHIKNYII_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3059692382812	2	582.824224	1163.63389	0.43661	0.00025446	0.21886	0.00012756	0.65547	0.00038202	582.8242943128824	45.377	0.45452	45.442	45.248	45.703	0.065048					32	16	2	0	0	0	0.15763	2	10117	10117;10167		29.841	12.898	1	196080			50582	1632	28899	28900	61888;61889	61888					0.058622914027409934
TYHKCCCDN	9	Unmodified	_TYHKCCCDN_					0	0	0			REV__ENSG00000127311|ENST00000247815|HELB	REV__ENSG00000127311|ENST00000247815|HELB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.6939697265625	2	543.693712	1085.37287	0.59481	0.0003234	0.086057	4.6789E-05	0.68087	0.00037019	543.6938810087271	22.047	0.84019	21.947	21.443	22.284	-0.10034					77	30	4	0	0	0	0.34809	2	2928	2928;3028		1.6526	0.96225	1	258920	+		50583	15334	28900	28901	61890;61891	61890					-0.1664010290260194
TYHKCCCDN	9	Unmodified	_TYHKCCCDN_					0	0	0			REV__ENSG00000127311|ENST00000247815|HELB	REV__ENSG00000127311|ENST00000247815|HELB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.6942138671875	2	543.693712	1085.37287	0.49072	0.0002668	0.42861	0.00023303	0.91933	0.00049984	543.6939260133754	21.999	0.96963	21.95	21.435	22.404	-0.049377					60	34	2	0	0	0	0.34809	2	2905	2905;3052		1.6526	0.96225	1	204440	+		50584	15334	28900	28901	61892;61893	61892					-0.1664010290260194
TYHPGVPVF	9	Unmodified	_TYHPGVPVF_					0	0	0		ENST00000533739.1_1_11:89951170-89956122:-|nuORF;ENST00000533724.5_1_11:89947115-89956122:-|nuORF;ENST00000581139.1_1_18:2946096-2946618:-|nuORF;nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1	ENST00000533739.1_1_11:89951170-89956122:-|nuORF	ENST00000533739.1_1_11:89951170-89956122:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.76361083984375	2	508.763635	1015.51272	0.28514	0.00014507	0.099378	5.056E-05	0.38452	0.00019563	508.7637683368285	51.856	0.8163	51.856	51.508	52.324	0					65	27	3	0	0	0	0.010938	1	12150	12150		77.984	43.882	1	1435800			50585	2300	28901	28902	61894	61894					0.0055808876010132735
TYHPGVPVF	9	Unmodified	_TYHPGVPVF_					0	0	0		ENST00000533739.1_1_11:89951170-89956122:-|nuORF;ENST00000533724.5_1_11:89947115-89956122:-|nuORF;ENST00000581139.1_1_18:2946096-2946618:-|nuORF;nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1	ENST00000533739.1_1_11:89951170-89956122:-|nuORF	ENST00000533739.1_1_11:89951170-89956122:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7637634277344	2	508.763635	1015.51272	0.30597	0.00015566	0.057236	2.912E-05	0.3632	0.00018478	508.76380247954876	51.822	0.77204	51.87	51.563	52.335	0.04837					61	26	3	0	0	0	0.010938	2	12137	12137;12190		77.984	51.101	1	1283700			50586	2300	28901	28902	61895;61896	61895					0.0055808876010132735
TYHPGVPVF	9	Unmodified	_TYHPGVPVF_					0	0	0		ENST00000533739.1_1_11:89951170-89956122:-|nuORF;ENST00000533724.5_1_11:89947115-89956122:-|nuORF;ENST00000581139.1_1_18:2946096-2946618:-|nuORF;nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1	ENST00000533739.1_1_11:89951170-89956122:-|nuORF	ENST00000533739.1_1_11:89951170-89956122:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.76397705078125	2	508.763635	1015.51272	0.072512	3.6892E-05	0.33936	0.00017265	0.41187	0.00020954	508.76386479883996	51.931	0.97555	51.93	51.602	52.578	-0.00081253					72	33	3	0	0	0	0.0084096	2	12169	12169;12238		81.864	53.377	1	1171900			50587	2300	28901	28902	61897;61898	61897					0.0055808876010132735
TYHQCTCQV	9	Unmodified	_TYHQCTCQV_					0	0	0			REV__ENSG00000162194|ENST00000354588|LBHD1	REV__ENSG00000162194|ENST00000354588|LBHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3060913085938	2	541.723326	1081.4321	0.24993	0.00013539	-1.2121	-0.00065661	-0.96214	-0.00052121	541.7225124267927	59.681	0.62638	59.681	59.38	60.006	0					70	21	5	0	0	0	0.25202	1	14550	14550		6.7232	1.9672	1	1611400	+		50588	16966	28902	28903	61899	61899					-0.10535883616762476
TYIDEMWY	8	Unmodified	_TYIDEMWY_					0	0	0			REV__ENST00000559272.1_1_15:79756054-79760723:+|nuORF	REV__ENST00000559272.1_1_15:79756054-79760723:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.7353515625	2	560.736425	1119.4583	0.32998	0.00018503	-1.4073	-0.0007891	-1.0773	-0.00060407	560.7353352086044	70.145	0.52956	70.211	69.91	70.439	0.06604					48	18	4	0	0	0	0.4397	1	17767	17767		9.3474	2.9933	1	350600	+		50589	17512	28903	28904	61900	61900					-0.09665291173632795
TYIDKSTQL	9	Unmodified	_TYIDKSTQL_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.781982421875	2	534.782222	1067.54989	0.59993	0.00032083	-0.57401	-0.00030697	0.025917	1.386E-05	534.7819564772175	35.982	0.64058	35.982	35.745	36.385	0					51	23	3	0	0	0	0.038672	1	7258	7258		57.108	20.601	1	546830			50590	2920	28904	28905	61901	61901					0.01881715515196447
TYIDKSTQL	9	Unmodified	_TYIDKSTQL_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7820434570312	2	534.782222	1067.54989	0.44093	0.0002358	-0.45043	-0.00024088	-0.0094998	-5.0803E-06	534.7819266043383	35.88	0.57442	35.962	35.71	36.284	0.082359					42	20	3	0	0	0	0.0083763	1	7239	7239		81.915	38.143	1	591740			50591	2920	28904	28905	61902	61902					0.01881715515196447
TYIDKSTQL	9	Unmodified	_TYIDKSTQL_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.781982421875	2	534.782222	1067.54989	0.6137	0.0003282	-1.4349	-0.00076738	-0.82124	-0.00043918	534.7818966689243	35.914	0.66201	36	35.671	36.333	0.086246					56	23	3	0	0	0	0.019446	1	7217	7217		64.927	26.751	1	555330			50592	2920	28904	28905	61903	61903					0.01881715515196447
TYIESASEL	9	Unmodified	_TYIESASEL_					0	0	0		chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14;ENST00000486564.5_1_2:31133891-31178528:-|nuORF;GALNT14|p.K297Nfs*27|1|0.28|ENSG00000158089|chr2:30942244-30942244|C/-|frameshift_variant	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.745361328125	2	506.745305	1011.47606	0.37342	0.00018923	-0.030127	-1.5267E-05	0.3433	0.00017396	506.7451726258944	51.581	0.99556	51.581	51.271	52.267	0					91	36	3	0	0	0	4.3382E-05	1	12041	12041		149.99	95.221	1	4300000			50593	149	28905	28906	61904	61904					-0.029222526471244237
TYIESASEL	9	Unmodified	_TYIESASEL_					0	0	0		chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14;ENST00000486564.5_1_2:31133891-31178528:-|nuORF;GALNT14|p.K297Nfs*27|1|0.28|ENSG00000158089|chr2:30942244-30942244|C/-|frameshift_variant	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7453918457031	2	506.745305	1011.47606	0.29131	0.00014762	0.12696	6.4336E-05	0.41827	0.00021196	506.745219717527	51.523	0.98416	51.57	51.321	52.305	0.046577					90	35	4	0	0	0	0.0037552	1	12036	12036		96.285	54.19	1	3711000			50594	149	28905	28906	61905	61905					-0.029222526471244237
TYIESASEL	9	Unmodified	_TYIESASEL_					0	0	0		chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14;nc|ENSG00000158089|Q96FL9-2|GALNT14;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14;nc|ENSG00000158089|Q96FL9-3|GALNT14;ENST00000486564.5_1_2:31133891-31178528:-|nuORF;GALNT14|p.K297Nfs*27|1|0.28|ENSG00000158089|chr2:30942244-30942244|C/-|frameshift_variant	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	chr2:30958464-30992838|511|13.05|0.31|5.42|-|ENST00000430167|GALNT14,GALNT14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7454528808594	2	506.745305	1011.47606	0.22198	0.00011249	0.15207	7.7062E-05	0.37405	0.00018955	506.74526783336063	51.61	0.96975	51.619	51.373	52.343	0.0095634					109	35	4	0	0	0	0.00094673	1	12070	12070		123.45	81.356	1	3272900			50595	149	28905	28906	61906	61906					-0.029222526471244237
TYIGQGYII	9	Unmodified	_TYIGQGYII_					0	0	0		ENSG00000141756|ENST00000321562|FKBP10;ENST00000489591.5_1_17:39969413-39975983:+|nuORF;nc|ENSG00000141756|Q96AY3-2|FKBP10	ENSG00000141756|ENST00000321562|FKBP10	ENSG00000141756|ENST00000321562|FKBP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2770385742188	2	514.276575	1026.5386	0.38026	0.00019556	0.75739	0.00038951	1.1376	0.00058507	514.2767509937925	68.755	0.87798	68.755	68.491	69.369	0					76	31	3	0	0	0	0.0037772	1	17335	17335		96.111	49.19	1	704920			50596	4411	28906	28907	61907	61907					0.026389382117031346
TYIGQGYII	9	Unmodified	_TYIGQGYII_					0	0	0		ENSG00000141756|ENST00000321562|FKBP10;ENST00000489591.5_1_17:39969413-39975983:+|nuORF;nc|ENSG00000141756|Q96AY3-2|FKBP10	ENSG00000141756|ENST00000321562|FKBP10	ENSG00000141756|ENST00000321562|FKBP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2769165039062	2	514.276575	1026.5386	0.28594	0.00014705	0.58172	0.00029916	0.86766	0.00044622	514.2767220296862	68.672	1.0697	68.744	68.484	69.554	0.071938					76	38	3	0	0	0	0.0059482	1	17318	17318		85.642	38.721	1	688610			50597	4411	28906	28907	61908	61908					0.026389382117031346
TYIGQGYII	9	Unmodified	_TYIGQGYII_					0	0	0		ENSG00000141756|ENST00000321562|FKBP10;ENST00000489591.5_1_17:39969413-39975983:+|nuORF;nc|ENSG00000141756|Q96AY3-2|FKBP10	ENSG00000141756|ENST00000321562|FKBP10	ENSG00000141756|ENST00000321562|FKBP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2765502929688	2	514.276575	1026.5386	0.22628	0.00011637	0.61865	0.00031816	0.84493	0.00043453	514.2766570448008	68.717	1.0888	68.698	68.429	69.518	-0.01915					87	38	3	0	0	0	0.0059482	1	17317	17317		85.642	38.721	1	720480			50598	4411	28906	28907	61909	61909					0.026389382117031346
TYIHALDNGLF	11	Unmodified	_TYIHALDNGLF_					0	0	0		ENST00000278882.8_1_20:29623184-29624050:+|nuORF;ENST00000514482.1_1_4:190862182-190882061:+|nuORF;ENSG00000109536|ENST00000226798|FRG1	ENST00000278882.8_1_20:29623184-29624050:+|nuORF	ENST00000278882.8_1_20:29623184-29624050:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.3234252929688	2	632.322045	1262.62954	0.40171	0.00025401	0.69436	0.00043906	1.0961	0.00069307	632.3231700867674	66.72	0.6227	66.72	66.453	67.076	0					49	21	3	0	0	0	0.21933	1	16752	16752		64.927	38.659	1	432790			50599	2258	28907	28908	61910	61910					0.008727821891625354
TYIHALDNGLF	11	Unmodified	_TYIHALDNGLF_					0	0	0		ENST00000278882.8_1_20:29623184-29624050:+|nuORF;ENST00000514482.1_1_4:190862182-190882061:+|nuORF;ENSG00000109536|ENST00000226798|FRG1	ENST00000278882.8_1_20:29623184-29624050:+|nuORF	ENST00000278882.8_1_20:29623184-29624050:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.3245849609375	2	632.322045	1262.62954	0.3034	0.00019184	0.99968	0.00063212	1.3031	0.00082397	632.8235948857864	66.677	0.74524	66.663	66.406	67.151	-0.013596					59	26	3	0	0	0	0.24511	1	16717	16717		57.204	42.366	1	449100			50600	2258	28907	28908	61911	61911					0.008727821891625354
TYIHALDNGLF	11	Unmodified	_TYIHALDNGLF_					0	0	0		ENST00000278882.8_1_20:29623184-29624050:+|nuORF;ENST00000514482.1_1_4:190862182-190882061:+|nuORF;ENSG00000109536|ENST00000226798|FRG1	ENST00000278882.8_1_20:29623184-29624050:+|nuORF	ENST00000278882.8_1_20:29623184-29624050:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	632.322045	1262.62954	0.35183	0.00022247	0.63288	0.00040018	0.98471	0.00062266	632.3228586599639	66.58	0.83408	66.664	66.354	67.188	0.083832	-0.018384	-0.00016196	NaN	64.927	62	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339780			50601	2258	28907	28908							0.008727821891625354
TYIKFINLF	9	Unmodified	_TYIKFINLF_					0	0	0		ENST00000597774.5_1_19:50303271-50309027:+|nuORF;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1	ENST00000597774.5_1_19:50303271-50309027:+|nuORF	ENST00000597774.5_1_19:50303271-50309027:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.316162109375	2	579.831517	1157.64848	0.40839	0.0002368	0.30843	0.00017884	0.71682	0.00041563	579.831346736295	79.291	1.7368	79.291	78.328	80.064	0					117	68	3	0	0	0	0.25706	1	20663	20663		6.7232	3.1267	1	354800			50602	7919	28908	28909	61912	61912					0.0759636355087423
TYIKFINLF	9	Unmodified	_TYIKFINLF_					0	0	0		ENST00000597774.5_1_19:50303271-50309027:+|nuORF;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1	ENST00000597774.5_1_19:50303271-50309027:+|nuORF	ENST00000597774.5_1_19:50303271-50309027:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.3153076171875	2	579.831517	1157.64848	0.44535	0.00025823	0.55983	0.00032461	1.0052	0.00058284	580.333459662254	79.224	1.9775	79.286	77.822	79.8	0.061409					135	79	3	0	0	0	0.24688	1	20643	20643		10.074	8.0142	1	357370			50603	7919	28908	28909	61913	61913					0.0759636355087423
TYIKFINLF	9	Unmodified	_TYIKFINLF_					0	0	0		ENST00000597774.5_1_19:50303271-50309027:+|nuORF;ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1	ENST00000597774.5_1_19:50303271-50309027:+|nuORF	ENST00000597774.5_1_19:50303271-50309027:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8308715820312	2	579.831517	1157.64848	0.44513	0.0002581	0.24433	0.00014167	0.68945	0.00039977	579.8312810869685	79.356	1.4991	79.327	79.003	80.502	-0.028923					98	55	3	0	0	0	0.074552	1	20644	20644		43.772	29.866	1	344950			50604	7919	28908	28909	61914	61914					0.0759636355087423
TYIKFVNLF	9	Unmodified	_TYIKFVNLF_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.8238525390625	2	572.823692	1143.63283	0.21117	0.00012096	0.10476	6.0009E-05	0.31593	0.00018097	573.3252089423368	75.316	0.64211	75.316	75.069	75.711	0					51	22	3	0	0	0	0.04299	1	19373	19373		55.503	28.619	1	403670			50605	7339	28909	28910	61915	61915					0.0667607703385329
TYIKFVNLF	9	Unmodified	_TYIKFVNLF_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.8237915039062	2	572.823692	1143.63283	0.39689	0.00022735	-0.34236	-0.00019611	0.054529	3.1236E-05	572.8232946612567	75.25	0.73122	75.302	75.076	75.807	0.052368					60	26	3	0	0	0	0.0079761	1	19332	19332		82.529	42.572	1	384250			50606	7339	28909	28910	61916	61916					0.0667607703385329
TYIKFVNLF	9	Unmodified	_TYIKFVNLF_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.823486328125	2	572.823692	1143.63283	0.4132	0.00023669	-0.421	-0.00024116	-0.0078027	-4.4696E-06	572.8231884357798	75.348	0.66727	75.316	75.109	75.777	-0.031479					59	24	3	0	0	0	0.017549	1	19356	19356		67.838	37.998	1	586540			50607	7339	28909	28910	61917	61917					0.0667607703385329
TYIKSPPFF	9	Unmodified	_TYIKSPPFF_					0	0	0		ENSG00000122729|ENST00000309951|ACO1	ENSG00000122729|ENST00000309951|ACO1	ENSG00000122729|ENST00000309951|ACO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2944946289062	2	550.294768	1098.57498	0.23635	0.00013006	-0.46236	-0.00025443	-0.226	-0.00012437	550.2944678385178	61.499	1.4813	61.499	61.155	62.637	0					99	55	2	0	0	0	0.016571	1	15135	15135		69.338	42.455	1	2448600			50608	3066	28910	28911	61918	61918					0.029638151084100173
TYIKSPPFF	9	Unmodified	_TYIKSPPFF_					0	0	0		ENSG00000122729|ENST00000309951|ACO1	ENSG00000122729|ENST00000309951|ACO1	ENSG00000122729|ENST00000309951|ACO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2945556640625	2	550.294768	1098.57498	0.10822	5.955E-05	-0.86406	-0.00047549	-0.75584	-0.00041594	550.2945067979247	61.406	1.378	61.503	61.194	62.572	0.096985					189	50	6	0	0	0	0.015924	1	15056	15056		70.332	36.23	1	3159800			50609	3066	28910	28911	61919	61919					0.029638151084100173
TYIKSPPFF	9	Unmodified	_TYIKSPPFF_					0	0	0		ENSG00000122729|ENST00000309951|ACO1	ENSG00000122729|ENST00000309951|ACO1	ENSG00000122729|ENST00000309951|ACO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.7965087890625	2	550.294768	1098.57498	0.14696	8.0874E-05	-0.49681	-0.00027339	-0.34984	-0.00019252	550.2944489663106	61.502	1.1896	61.493	61.162	62.352	-0.0094566					82	43	2	0	0	0	0.010888	1	15078	15078		78.06	43.958	1	2858200			50610	3066	28910	28911	61920	61920					0.029638151084100173
TYINPFVSF	9	Unmodified	_TYINPFVSF_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2769165039062	2	544.276575	1086.5386	0.68981	0.00037545	-0.15346	-8.3523E-05	0.53636	0.00029193	544.2763430655715	84.874	1.7267	84.874	84.497	86.224	0					172	65	4	0	0	0	0.00012746	7	22265	22203;22219;22265;22311;22360;22413;22513		136.39	103.82	1	3095900			50611	2517	28911	28912	61921;61922;61923;61924;61925;61926;61927	61923					-0.0012106178828616976
TYINPFVSF	9	Unmodified	_TYINPFVSF_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.27685546875	2	544.276575	1086.5386	0.80285	0.00043697	-0.30153	-0.00016412	0.50132	0.00027286	544.2762202503653	84.783	2.1515	84.864	84.422	86.573	0.080879					195	83	4	0	0	0	0.0008224	6	22230	22184;22230;22275;22323;22371;22417		125.04	92.732	1	2720000			50612	2517	28911	28912	61928;61929;61930;61931;61932;61933	61929					-0.0012106178828616976
TYINPFVSF	9	Unmodified	_TYINPFVSF_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2767944335938	2	544.276575	1086.5386	0.81237	0.00044215	-0.21776	-0.00011852	0.59461	0.00032363	544.276283733063	84.878	2.0556	84.865	84.302	86.358	-0.01284					188	79	4	0	0	0	5.4053E-05	7	22246	22189;22204;22246;22290;22339;22388;22437		148.27	148.27	1	3080600			50613	2517	28911	28912	61934;61935;61936;61937;61938;61939;61940	61936					-0.0012106178828616976
TYIPGTQITF	10	Unmodified	_TYIPGTQITF_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.7999877929688	2	570.800414	1139.58628	0.12705	7.2523E-05	-0.66265	-0.00037824	-0.5356	-0.00030572	570.7999083456506	75.42	0.69863	75.42	75.178	75.877	0					65	24	4	0	0	0	0.29613	1	19439	19439		23.79	8.9515	1	717310			50614	4353	28912	28913	61941	61941					0.022065924119033298
TYIPGTQITF	10	Unmodified	_TYIPGTQITF_					0	0	0		ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF	ENSG00000141027|ENST00000268712|NCOR1	ENSG00000141027|ENST00000268712|NCOR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7999877929688	2	570.800414	1139.58628	0.39547	0.00022574	-0.8657	-0.00049414	-0.47023	-0.00026841	570.7997974124598	75.391	0.64876	75.443	75.187	75.836	0.052361					64	23	4	0	0	0	0.20497	1	19376	19376		32.037	18.995	1	789710			50615	4353	28912	28913	61942	61942					0.022065924119033298
TYIPPLLVAF	10	Unmodified	_TYIPPLLVAF_					0	0	0		ENSG00000205084|ENST00000258173|TMEM231;ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF	ENSG00000205084|ENST00000258173|TMEM231	ENSG00000205084|ENST00000258173|TMEM231	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2615966796875	2	567.333893	1132.65323	0.16719	9.4854E-05	-0.59382	-0.00033689	-0.42663	-0.00024204	567.3335838584721	98.775	1.3358	98.826	98.427	99.763	0.050888					424	174	4	0	0	0	0.24708	1	26366	26366		36.127	21.289	1	936070			50616	8270	28913	28914	61943	61943					0.09221247693653822
TYIPPLLVAF	10	Unmodified	_TYIPPLLVAF_					0	0	0		ENSG00000205084|ENST00000258173|TMEM231;ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF	ENSG00000205084|ENST00000258173|TMEM231	ENSG00000205084|ENST00000258173|TMEM231	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2614135742188	2	567.333893	1132.65323	0.21612	0.00012262	-0.39998	-0.00022692	-0.18386	-0.00010431	567.3336902422416	98.844	1.0006	98.837	98.449	99.449	-0.006897					323	122	3	0	0	0	0.27337	1	26425	26425		29.082	14.243	1	858860			50617	8270	28913	28914	61944	61944					0.09221247693653822
TYIPSTQNPAF	11	Unmodified	_TYIPSTQNPAF_					0	0	0		nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1	nc|ENSG00000153064|Q8NDB2-4|BANK1	nc|ENSG00000153064|Q8NDB2-4|BANK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.2556762695312	2	619.806228	1237.5979	0.27995	0.00017351	-0.11022	-6.8318E-05	0.16972	0.0001052	619.8057644596843	58.802	0.31852	58.788	58.712	59.031	-0.014271					15	10	2	0	0	0	0.32875	1	14254	14254		20.581	11.836	1	146970			50618	5056	28914	28915	61945	61945					-0.011392105647928474
TYIPSTQNPAF	11	Unmodified	_TYIPSTQNPAF_					0	0	0		nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1	nc|ENSG00000153064|Q8NDB2-4|BANK1	nc|ENSG00000153064|Q8NDB2-4|BANK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	619.806228	1237.5979	0.17681	0.00010959	0.16429	0.00010183	0.3411	0.00021141	619.8061288600654	58.652	0.37135	58.744	58.612	58.983	0.091301	-0.022122	5.9751E-05	NaN	20.581	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170640			50619	5056	28914	28915							-0.011392105647928474
TYIPVPAKI	9	Unmodified	_TYIPVPAKI_					0	0	0		ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.305419921875	2	501.305136	1000.59572	0.61943	0.00031053	0.13339	6.6871E-05	0.75283	0.0003774	501.30522779813805	54.26	1.4147	54.26	53.806	55.221	0					107	49	3	0	0	0	0.040595	1	12890	12890		74.929	67.019	1	6385400			50620	399	28915	28916	61946	61946					0.09544405488077246
TYIPVPAKI	9	Unmodified	_TYIPVPAKI_					0	0	0		ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.3053894042969	2	501.305136	1000.59572	0.5542	0.00027782	0.18925	9.4874E-05	0.74346	0.0003727	501.3052787498235	54.202	1.3039	54.265	53.801	55.105	0.063202					112	47	3	0	0	0	0.010453	1	12862	12862		78.728	63.89	1	6735000			50621	399	28915	28916	61947	61947					0.09544405488077246
TYIPVPAKI	9	Unmodified	_TYIPVPAKI_					0	0	0		ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.30535888671875	2	501.305136	1000.59572	0.5253	0.00026334	0.26719	0.00013394	0.79249	0.00039728	501.3053311221488	54.288	1.1465	54.272	53.833	54.98	-0.015919					96	38	3	0	0	0	0.082808	1	12893	12893		49.933	44.702	1	7792600			50622	399	28915	28916	61948	61948					0.09544405488077246
TYIQDAFQL	9	Unmodified	_TYIQDAFQL_					0	0	0		ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1	ENST00000508737.1_1_4:38930819-38945175:+|nuORF	ENST00000508737.1_1_4:38930819-38945175:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2977294921875	2	549.776939	1097.53933	0.65667	0.00036102	-0.2693	-0.00014806	0.38737	0.00021296	549.7769795319085	74.491	0.93632	74.491	73.998	74.934	0					82	31	4	0	0	0	0.052436	1	19063	19063		65.474	21.701	1	1561300			50623	7991	28916	28917	61949	61949					-0.005542671392504417
TYIQDAFQL	9	Unmodified	_TYIQDAFQL_					0	0	0		ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1	ENST00000508737.1_1_4:38930819-38945175:+|nuORF	ENST00000508737.1_1_4:38930819-38945175:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7774658203125	2	549.776939	1097.53933	0.42377	0.00023298	-0.22971	-0.00012629	0.19407	0.00010669	549.7771488712361	74.423	1.637	74.475	73.28	74.917	0.052361					98	57	3	0	0	0	0.050251	1	19086	19086		71.922	31.965	1	1330100			50624	7991	28916	28917	61950	61950					-0.005542671392504417
TYIQDAFQL	9	Unmodified	_TYIQDAFQL_					0	0	0		ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1	ENST00000508737.1_1_4:38930819-38945175:+|nuORF	ENST00000508737.1_1_4:38930819-38945175:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2976684570312	2	549.776939	1097.53933	0.58421	0.00032118	-0.30673	-0.00016863	0.27747	0.00015255	549.7769739667241	74.463	1.2052	74.432	73.855	75.06	-0.030663					83	42	3	0	0	0	0.0033458	1	19051	19051		99.755	48.125	1	1363400			50625	7991	28916	28917	61951	61951					-0.005542671392504417
TYIQKIFRM	9	Oxidation (M)	_TYIQKIFRM(Oxidation (M))_		TYIQKIFRM(1)		TYIQKIFRM(100)	0	0	1		ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3;ENSG00000087008|ENST00000356406|ACOX3	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.89007568359375	3	405.889998	1214.64816	-0.12305	-4.9946E-05	0.32148	0.00013049	0.19843	8.0539E-05	405.89006797482546	43.802	1.5468	43.802	43.414	44.961	0					129	56	5	0	0	0	0.0027197	3	9648	9601;9648;9691		104.48	87.918	1	4685000			50626	1291	28917	28918	61952;61953;61954	61953		159			0.04942620559381794
TYIQKIFRM	9	Oxidation (M)	_TYIQKIFRM(Oxidation (M))_		TYIQKIFRM(1)		TYIQKIFRM(100)	0	0	1		ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3;ENSG00000087008|ENST00000356406|ACOX3	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.3317260742188	2	608.331359	1214.64816	0.35211	0.0002142	0.34405	0.0002093	0.69616	0.0004235	608.3313968011988	43.776	0.91649	43.776	43.441	44.357	0					89	33	4	0	0	0	0.0032746	3	9650	9603;9650;9701		100.09	76.07	1	2208100			50627	1291	28917	28918	61955;61956;61957	61956		159			0.04942620559381794
TYIQKIFRM	9	Oxidation (M)	_TYIQKIFRM(Oxidation (M))_		TYIQKIFRM(1)		TYIQKIFRM(77)	0	0	1		ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3;ENSG00000087008|ENST00000356406|ACOX3	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.8899841308594	3	405.889998	1214.64816	0.041184	1.6716E-05	0.014629	5.9378E-06	0.055813	2.2654E-05	405.8899663442448	43.404	1.1081	43.481	43.1	44.208	0.077515					136	40	5	0	0	0	0.011547	3	9536	9490;9536;9590		77.049	64.874	1	4845500			50628	1291	28917	28918	61958;61959;61960	61959		159			0.04942620559381794
TYIQKIFRM	9	Oxidation (M)	_TYIQKIFRM(Oxidation (M))_		TYIQKIFRM(1)		TYIQKIFRM(130)	0	0	1		ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3;ENSG00000087008|ENST00000356406|ACOX3	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.331787109375	2	608.331359	1214.64816	0.54367	0.00033073	0.15101	9.1864E-05	0.69468	0.00042259	608.3313083003903	43.409	0.89697	43.486	43.127	44.024	0.077515					92	32	4	0	0	0	0.00019464	3	9498	9498;9547;9600		133.05	109.03	1	2285800			50629	1291	28917	28918	61961;61962;61963	61961		159			0.04942620559381794
TYIQKIFRM	9	Oxidation (M)	_TYIQKIFRM(Oxidation (M))_		TYIQKIFRM(1)		TYIQKIFRM(91)	0	0	1		ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3;ENSG00000087008|ENST00000356406|ACOX3	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.8899841308594	3	405.889998	1214.64816	0.013277	5.3892E-06	0.04423	1.7953E-05	0.057508	2.3342E-05	405.88997200088966	43.412	1.0952	43.496	43.088	44.183	0.083992					128	40	5	0	0	0	0.0044119	3	9519	9472;9519;9571		91.085	69.495	1	4336600			50630	1291	28917	28918	61964;61965;61966	61965		159			0.04942620559381794
TYIQKIFRM	9	Oxidation (M)	_TYIQKIFRM(Oxidation (M))_		TYIQKIFRM(1)		TYIQKIFRM(110)	0	0	1		ENST00000510365.5_1_4:8376552-8417570:-|nuORF;nc|ENSG00000087008|O15254-2|ACOX3;ENSG00000087008|ENST00000356406|ACOX3	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.3316650390625	2	608.331359	1214.64816	0.37217	0.0002264	0.42149	0.00025641	0.79366	0.00048281	608.3314235559707	43.455	0.9094	43.539	43.166	44.075	0.083996					97	33	4	0	0	0	0.001957	3	9528	9481;9528;9581		110.55	90.099	1	2098400			50631	1291	28917	28918	61967;61968;61969	61968		159			0.04942620559381794
TYIQNFRFF	9	Unmodified	_TYIQNFRFF_					0	0	0		nc|ENSG00000204084|P32019-4|INPP5B;nc|ENSG00000204084|P32019-3|INPP5B;INPP5B|p.S858Ifs*17|1|0.05|ENSG00000204084|chr1:37866513-37866514|-/TATTGTAT|frameshift_variant;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B	nc|ENSG00000204084|P32019-4|INPP5B	nc|ENSG00000204084|P32019-4|INPP5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.3229370117188	2	618.314023	1234.61349	0.28894	0.00017866	-2.1563	-0.0013332	-1.8673	-0.0011546	618.3124343990116	71.556	0.75644	71.556	71.375	72.132	0					29	16	2	0	0	0	0.22061	1	18350	18350		24.021	9.1823	1	504320			50632	12906	28918	28919	61970	61970					0.005571207429284186
TYIQNFRFF	9	Unmodified	_TYIQNFRFF_					0	0	0		nc|ENSG00000204084|P32019-4|INPP5B;nc|ENSG00000204084|P32019-3|INPP5B;INPP5B|p.S858Ifs*17|1|0.05|ENSG00000204084|chr1:37866513-37866514|-/TATTGTAT|frameshift_variant;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B	nc|ENSG00000204084|P32019-4|INPP5B	nc|ENSG00000204084|P32019-4|INPP5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.3132934570312	2	618.314023	1234.61349	0.13071	8.0821E-05	-1.524	-0.00094231	-1.3933	-0.00086148	618.3124572242107	71.472	0.43741	71.528	71.375	71.812	0.056572					40	15	3	0	0	0	0.0028626	1	18189	18189		103.35	70.568	1	630660			50633	12906	28918	28919	61971	61971					0.005571207429284186
TYIQNFRFF	9	Unmodified	_TYIQNFRFF_					0	0	0		nc|ENSG00000204084|P32019-4|INPP5B;nc|ENSG00000204084|P32019-3|INPP5B;INPP5B|p.S858Ifs*17|1|0.05|ENSG00000204084|chr1:37866513-37866514|-/TATTGTAT|frameshift_variant;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B	nc|ENSG00000204084|P32019-4|INPP5B	nc|ENSG00000204084|P32019-4|INPP5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.3145141601562	2	618.314023	1234.61349	0.30247	0.00018702	-1.7719	-0.0010956	-1.4694	-0.00090856	618.3125644967073	71.632	0.66489	71.605	71.452	72.117	-0.027267					46	23	3	0	0	0	0.0019475	3	18232	18224;18232;18281		110.67	77.23	1	815550			50634	12906	28918	28919	61972;61973;61974	61973					0.005571207429284186
TYIRKYIL	8	Unmodified	_TYIRKYIL_					0	0	0		nc|ENSG00000173698|Q8IZP9-10|ADGRG2;nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2	nc|ENSG00000173698|Q8IZP9-10|ADGRG2	nc|ENSG00000173698|Q8IZP9-10|ADGRG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.2525634765625	2	535.32386	1068.63317	0.71544	0.00038299	-3.3847	-0.0018119	-2.6693	-0.0014289	535.3215083759685	36.089	0.26334	36.175	36.009	36.272	0.086246					12	9	2	0	0	0	0.28969	1	7279	7279		21.747	5.5975	1	129710			50635	6742	28919	28920	61975	61975					0.10159496753703934
TYIRLYGRKF	10	Unmodified	_TYIRLYGRKF_					0	0	0		ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.5872802734375	3	439.587307	1315.74009	-0.18301	-8.0449E-05	-0.12012	-5.2802E-05	-0.30313	-0.00013325	439.5871201623719	39.689	0.77219	39.689	39.454	40.226	0					69	27	3	0	0	0	0.25441	2	8392	8392;8440		25.997	20.214	1	550370			50636	891	28920	28921	61976;61977	61976					0.09485046968052302
TYIRLYGRKF	10	Unmodified	_TYIRLYGRKF_					0	0	0		ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.5871887207031	3	439.587307	1315.74009	0.014113	6.2041E-06	-0.28713	-0.00012622	-0.27302	-0.00012001	439.58712833066335	39.536	0.66452	39.629	39.278	39.943	0.09267					65	23	4	0	0	0	0.25441	2	8327	8327;8376		25.997	17.021	1	544290			50637	891	28920	28921	61978;61979	61978					0.09485046968052302
TYIRLYGRKF	10	Unmodified	_TYIRLYGRKF_					0	0	0		ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.5872802734375	3	439.587307	1315.74009	0.097099	4.2683E-05	-0.16765	-7.3699E-05	-0.070556	-3.1015E-05	439.58708222275567	39.571	0.72152	39.671	39.396	40.118	0.099403					54	25	3	0	0	0	0.1693	2	8336	8336;8400		36.395	27.419	1	675720			50638	891	28920	28921	61980;61981	61980					0.09485046968052302
TYISAIRERF	10	Unmodified	_TYISAIRERF_					0	0	0		ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.3434448242188	2	628.343312	1254.67207	0.45742	0.00028741	-0.25487	-0.00016015	0.20254	0.00012727	628.3432874618728	48.799	0.52851	48.799	48.636	49.164	0					25	18	2	0	0	0	0.12628	1	11197	11197		42.312	27.064	1	454970			50639	5553	28921	28922	61982	61982					0.05492177317387359
TYISAIRERF	10	Unmodified	_TYISAIRERF_					0	0	0		ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.2312927246094	3	419.2313	1254.67207	0.22318	9.3565E-05	-0.13413	-5.6232E-05	0.089051	3.7333E-05	419.23134667765606	48.841	0.79538	48.886	48.522	49.317	0.044891					57	28	3	0	0	0	0.27248	2	11222	11172;11222		21.799	10.901	1	1231200			50640	5553	28921	28922	61983;61984	61984					0.05492177317387359
TYISAIRERF	10	Unmodified	_TYISAIRERF_					0	0	0		ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	628.3430786132812	2	628.343312	1254.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.951	1	48.996	48.496	49.496	0.044891								0	0	0	0.34155	1	11240	11240		18.373	3.1246	1				50641	5553	28921	28922	61985	61985					0.05492177317387359
TYISAIRERF	10	Unmodified	_TYISAIRERF_					0	0	0		ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.2314453125	3	419.2313	1254.67207	0.12407	5.2014E-05	0.032922	1.3802E-05	0.15699	6.5816E-05	419.2313289925456	48.7	0.64938	48.732	48.447	49.096	0.032043					54	23	3	0	0	0	0.25422	1	11148	11148		23.016	12.117	1	1132000			50642	5553	28921	28922	61986	61986					0.05492177317387359
TYISAIRERF	10	Unmodified	_TYISAIRERF_					0	0	0		ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.3440551757812	2	628.343312	1254.67207	0.25937	0.00016298	0.10157	6.3822E-05	0.36095	0.0002268	628.3433702303473	48.735	0.45701	48.767	48.497	48.954	0.032043					23	16	2	0	0	0	0.18709	1	11158	11158		34.222	23.422	1	419130			50643	5553	28921	28922	61987	61987					0.05492177317387359
TYISAIRERF	10	Unmodified	_TYISAIRERF_					0	0	0		ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.8829345703125	3	419.2313	1254.67207	0.12286	5.1506E-05	-0.7195	-0.00030164	-0.59664	-0.00025013	419.2308518356061	40.548	0.32819	40.647	40.532	40.86	0.099407					13	11	2	0	0	0	0.31942	1	8668	8668		6.1918	0.40842	1	115010			50644	5553	28921	28922	61988	61988					0.05492177317387359
TYISAIRERF	10	Unmodified	_TYISAIRERF_					0	0	0		ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	419.2313	1254.67207	0.055866	2.3421E-05	0.0046947	1.9682E-06	0.06056	2.5389E-05	419.2313375087361	48.822	0.82227	48.822	48.528	49.351	0	0.0086453	3.4547E-05	NaN	23.016	65	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1098500			50645	5553	28921	28922							0.05492177317387359
TYISKTIAL	9	Unmodified	_TYISKTIAL_					0	0	0		nc|ENSG00000283632|Q2M3D2|EXOC3L2;ENSG00000283632|ENST00000413988|EXOC3L2	nc|ENSG00000283632|Q2M3D2|EXOC3L2	nc|ENSG00000283632|Q2M3D2|EXOC3L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2771301269531	2	505.30005	1008.58555	0.44293	0.00022381	-0.40333	-0.0002038	0.039604	2.0012E-05	505.29977589721574	49.132	0.63251	49.132	48.883	49.516	0					45	22	3	0	0	0	0.18479	1	11336	11336		34.932	8.6639	1	700820			50646	8762	28922	28923	61989	61989					0.0815979776284621
TYISKTIAL	9	Unmodified	_TYISKTIAL_					0	0	0		nc|ENSG00000283632|Q2M3D2|EXOC3L2;ENSG00000283632|ENST00000413988|EXOC3L2	nc|ENSG00000283632|Q2M3D2|EXOC3L2	nc|ENSG00000283632|Q2M3D2|EXOC3L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.27716064453125	2	505.30005	1008.58555	0.27454	0.00013873	-0.40555	-0.00020493	-0.13101	-6.62E-05	505.2998024331784	49.196	0.83965	49.241	48.961	49.801	0.044891					59	30	3	0	0	0	0.1335	1	11312	11312		47.594	14.809	1	650820			50647	8762	28922	28923	61990	61990					0.0815979776284621
TYISKTIAL	9	Unmodified	_TYISKTIAL_					0	0	0		nc|ENSG00000283632|Q2M3D2|EXOC3L2;ENSG00000283632|ENST00000413988|EXOC3L2	nc|ENSG00000283632|Q2M3D2|EXOC3L2	nc|ENSG00000283632|Q2M3D2|EXOC3L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2771301269531	2	505.30005	1008.58555	0.16574	8.3751E-05	-0.25683	-0.00012978	-0.091089	-4.6027E-05	505.2999303320138	49.103	0.90852	49.135	48.904	49.813	0.032043					56	32	3	0	0	0	0.21026	1	11309	11309		28.495	8.08	1	756620			50648	8762	28922	28923	61991	61991					0.0815979776284621
TYISTIGIDF	10	Unmodified	_TYISTIGIDF_					0	0	0		ENST00000462680.5_1_1:153955993-153958658:-|nuORF;ENSG00000143545|ENST00000368575|RAB13	ENST00000462680.5_1_1:153955993-153958658:-|nuORF	ENST00000462680.5_1_1:153955993-153958658:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8206787109375	2	565.292422	1128.57029	0.23998	0.00013566	-0.64559	-0.00036494	-0.40561	-0.00022929	565.2918707676524	81.454	0.49493	81.454	81.204	81.699	0					36	21	2	0	0	0	0.29038	1	21226	21226		24.021	5.6475	1	135470			50649	4527	28923	28924	61992	61992					0.01114886174991625
TYISTIGIDF	10	Unmodified	_TYISTIGIDF_					0	0	0		ENST00000462680.5_1_1:153955993-153958658:-|nuORF;ENSG00000143545|ENST00000368575|RAB13	ENST00000462680.5_1_1:153955993-153958658:-|nuORF	ENST00000462680.5_1_1:153955993-153958658:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.820556640625	2	565.292422	1128.57029	0.082643	4.6717E-05	1.1249	0.00063588	1.2075	0.00068259	565.2919549699884	81.41	0.584	81.479	81.213	81.797	0.068993					64	28	3	0	0	0	0.31143	1	21184	21184		12.241	8.2963	1	210760			50650	4527	28923	28924	61993	61993					0.01114886174991625
TYISTIGIDF	10	Unmodified	_TYISTIGIDF_					0	0	0		ENST00000462680.5_1_1:153955993-153958658:-|nuORF;ENSG00000143545|ENST00000368575|RAB13	ENST00000462680.5_1_1:153955993-153958658:-|nuORF	ENST00000462680.5_1_1:153955993-153958658:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.8206787109375	2	565.292422	1128.57029	0.27076	0.00015306	1.3724	0.00077582	1.6432	0.00092888	565.2917964916281	81.425	1.0189	81.401	81.091	82.11	-0.02404					103	43	4	0	0	0	0.27979	1	21213	21213		21.537	14.814	1	258220			50651	4527	28923	28924	61994	61994					0.01114886174991625
TYISWKEEL	9	Unmodified	_TYISWKEEL_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.7985229492188	2	584.797872	1167.58119	0.41872	0.00024487	0.13287	7.7703E-05	0.5516	0.00032257	584.7980642315335	56.769	0.79439	56.769	56.555	57.35	0					72	29	4	0	0	0	0.013404	2	13648	13648;13699		74.2	37.693	1	833350			50652	3405	28924	28925	61995;61996	61995					0.004102885493011854
TYISWKEEL	9	Unmodified	_TYISWKEEL_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.79833984375	2	584.797872	1167.58119	0.41839	0.00024468	0.45355	0.00026524	0.87195	0.00050991	584.7981984001448	56.658	0.74711	56.736	56.513	57.261	0.078671					62	27	3	0	0	0	0.086462	2	13664	13639;13664		40.239	19.825	1	814540			50653	3405	28924	28925	61997;61998	61998					0.004102885493011854
TYISWKEEL	9	Unmodified	_TYISWKEEL_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.798583984375	2	584.797872	1167.58119	0.45556	0.00026641	0.45477	0.00026595	0.91033	0.00053236	584.7982158246837	57.045	0.68729	57.025	56.754	57.441	-0.019081					54	24	3	0	0	0	0.04299	2	13722	13722;13789		55.503	29.235	1	793000			50654	3405	28924	28925	61999;62000	61999					0.004102885493011854
TYITDAYYNI	10	Unmodified	_TYITDAYYNI_					0	0	0			REV__ENSG00000197241|ENST00000400906|SLC2A7	REV__ENSG00000197241|ENST00000400906|SLC2A7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.79248046875	2	618.792786	1235.57102	0.46945	0.00029049	-0.39035	-0.00024154	0.079097	4.8945E-05	618.7924416445612	64.462	0.62237	64.462	64.212	64.834	0					50	22	3	0	0	0	0.24335	1	16017	16017		39.95	7.164	1	566170	+		50655	18721	28925	28926	62001	62001					-0.037343191759418914
TYITDAYYNI	10	Unmodified	_TYITDAYYNI_					0	0	0			REV__ENSG00000197241|ENST00000400906|SLC2A7	REV__ENSG00000197241|ENST00000400906|SLC2A7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.7919921875	2	618.792786	1235.57102	0.29104	0.00018009	-0.37544	-0.00023232	-0.084405	-5.2229E-05	618.7924703652044	64.334	0.65538	64.427	64.142	64.798	0.09288					55	23	3	0	0	0	0.24335	1	15979	15979		39.95	7.164	1	606600	+		50656	18721	28925	28926	62002	62002					-0.037343191759418914
TYITRHHAL	9	Unmodified	_TYITRHHAL_					0	0	0			REV__ENSG00000264717|ENST00000576178|NPY4R2	REV__ENSG00000264717|ENST00000576178|NPY4R2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.78076171875	2	556.30399	1110.59343	0.50746	0.0002823	-2.3165	-0.0012887	-1.809	-0.0010064	556.802415448409	76.951	0.13139	76.92	76.829	76.96	-0.031334					6	4	2	0	0	0	0.24289	1	19824	19824		13.042	0	1	144240	+		50657	18921	28926	28927	62003	62003					0.04255369802990572
TYITSVSRL	9	Unmodified	_TYITSVSRL_					0	0	0		nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2925415039062	2	520.292756	1038.57096	0.17583	9.1481E-05	-0.45259	-0.00023548	-0.27677	-0.000144	520.2924963264384	46.37	1.1328	46.37	46.055	47.187	0					117	40	4	0	0	0	8.0996E-05	4	10450	10450;10492;10544;10598		143.91	90.076	1	15840000			50658	5880	28927	28928	62004;62005;62006;62007	62004					0.053217256147036096
TYITSVSRL	9	Unmodified	_TYITSVSRL_					0	0	0		nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2926635742188	2	520.292756	1038.57096	0.22201	0.00011551	-0.42803	-0.0002227	-0.20601	-0.00010719	520.2925428720843	46.164	1.3001	46.224	45.926	47.226	0.059834					131	47	4	0	0	0	6.549E-06	5	10368	10368;10416;10470;10520;10575		155.95	104.32	1	16254000			50659	5880	28927	28928	62008;62009;62010;62011;62012	62008					0.053217256147036096
TYITSVSRL	9	Unmodified	_TYITSVSRL_					0	0	0		nc|ENSG00000164823|Q9Y236|OSGIN2;ENSG00000164823|ENST00000451899|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	nc|ENSG00000164823|Q9Y236|OSGIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2924194335938	2	520.292756	1038.57096	0.32344	0.00016828	-0.56267	-0.00029275	-0.23923	-0.00012447	520.2924827973933	46.182	1.3413	46.247	45.925	47.266	0.065048					142	47	5	0	0	0	2.973E-07	6	10407	10322;10365;10407;10452;10499;10549		168.54	108.46	1	15037000			50660	5880	28927	28928	62013;62014;62015;62016;62017;62018	62015					0.053217256147036096
TYIYIYIYI	9	Unmodified	_TYIYIYIYI_					0	0	0			REV__L1PB1_dup3128|chr4:69113520-69114297:-|1.5247760769272896|0.0367122813862255|5.38|530.0|15|2|sense	REV__L1PB1_dup3128|chr4:69113520-69114297:-|1.5247760769272896|0.0367122813862255|5.38|530.0|15|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.58380126953125	3	408.889881	1223.64781	0.073014	2.9855E-05	2.3736	0.00097053	2.4466	0.0010004	408.89118103968497	49.152	0.49339	49.152	48.995	49.488	0					31	17	2	0	0	0	0.25612	1	11290	11290		8.1555	2.3721	1	138400	+		50661	22828	28928	28929	62019	62019					0.04493524111194347
TYIYIYIYI	9	Unmodified	_TYIYIYIYI_					0	0	0			REV__L1PB1_dup3128|chr4:69113520-69114297:-|1.5247760769272896|0.0367122813862255|5.38|530.0|15|2|sense	REV__L1PB1_dup3128|chr4:69113520-69114297:-|1.5247760769272896|0.0367122813862255|5.38|530.0|15|2|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	408.889881	1223.64781	-0.10965	-4.4833E-05	3.0377	0.0012421	2.9281	0.0011973	409.2256780310585	49.143	0.45737	49.175	48.983	49.441	0.032043	-0.036644	0.00059109	NaN	8.1555	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129920	+		50662	22828	28928	28929							0.04493524111194347
TYKAFNTFI	9	Unmodified	_TYKAFNTFI_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L;ENST00000511268.6_1_5:1320729-1323921:-|nuORF;ENST00000506641.5_1_5:1318486-1326363:-|nuORF	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7900390625	2	552.78985	1103.56515	0.33962	0.00018774	0.081253	4.4916E-05	0.42087	0.00023265	552.7898169442068	57.764	0.83172	57.764	57.466	58.298	0					85	29	4	0	0	0	0.0031966	3	13981	13929;13981;14029		100.71	54.841	1	3763800			50663	654	28929	28930	62020;62021;62022	62021					0.01750627103047009
TYKAFNTFI	9	Unmodified	_TYKAFNTFI_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L;ENST00000511268.6_1_5:1320729-1323921:-|nuORF;ENST00000506641.5_1_5:1318486-1326363:-|nuORF	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7900390625	2	552.78985	1103.56515	0.40703	0.000225	0.10236	5.6581E-05	0.50938	0.00028158	552.7898071697324	57.57	0.68056	57.656	57.372	58.053	0.085621					65	24	3	0	0	0	0.0023895	3	13905	13856;13905;13956		107.1	63.241	1	4014400			50664	654	28929	28930	62023;62024;62025	62024					0.01750627103047009
TYKAFNTFI	9	Unmodified	_TYKAFNTFI_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L;ENST00000511268.6_1_5:1320729-1323921:-|nuORF;ENST00000506641.5_1_5:1318486-1326363:-|nuORF	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7899169921875	2	552.78985	1103.56515	0.37867	0.00020933	-0.13178	-7.2846E-05	0.24689	0.00013648	552.78977886863	57.935	1.0993	57.917	57.582	58.681	-0.0172					95	40	4	0	0	0	0.0011116	3	14011	13964;14011;14062		121.35	69.078	1	3816100			50665	654	28929	28930	62026;62027;62028	62027					0.01750627103047009
TYKALNTFI	9	Unmodified	_TYKALNTFI_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7979125976562	2	535.797675	1069.5808	0.79365	0.00042524	0.033459	1.7927E-05	0.82711	0.00044317	535.7975714840536	54.474	0.75528	54.474	54.136	54.891	0					60	27	3	0	0	0	0.0023309	1	12968	12968		107.56	44.991	1	2092700			50666	1924	28930	28931	62029	62029					0.04878913620086678
TYKALNTFI	9	Unmodified	_TYKALNTFI_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7979125976562	2	535.797675	1069.5808	0.60981	0.00032674	0.30735	0.00016468	0.91716	0.00049141	535.7977272926107	54.424	0.67067	54.487	54.192	54.863	0.063206					56	24	3	0	0	0	0.0023309	1	12930	12930		107.56	44.991	1	2232000			50667	1924	28930	28931	62030	62030					0.04878913620086678
TYKALNTFI	9	Unmodified	_TYKALNTFI_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7980346679688	2	535.797675	1069.5808	0.77867	0.00041721	0.038815	2.0797E-05	0.81749	0.00043801	535.7975807587444	54.694	0.61828	54.678	54.361	54.98	-0.015923					46	21	3	0	0	0	0.0035713	1	13036	13036		97.741	43.908	1	2452200			50668	1924	28930	28931	62031	62031					0.04878913620086678
TYKDYVDLF	9	Unmodified	_TYKDYVDLF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.28466796875	2	582.284597	1162.55464	0.28197	0.00016419	-0.12185	-7.0951E-05	0.16012	9.3234E-05	582.2845041974206	64.85	1.0065	64.85	64.539	65.545	0					104	36	4	0	0	0	0.0024096	2	16146	16096;16146		106.94	62.117	1	2066200			50669	8602	28931	28932	62032;62033	62033					-0.02013400342048044
TYKDYVDLF	9	Unmodified	_TYKDYVDLF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.2846069335938	2	582.284597	1162.55464	0.33228	0.00019348	-0.47948	-0.0002792	-0.1472	-8.5714E-05	582.2844483350272	64.756	1.1536	64.849	64.554	65.708	0.09288					123	42	6	0	0	0	0.001957	2	16115	16068;16115		110.55	58.284	1	2079100			50670	8602	28931	28932	62034;62035	62035					-0.02013400342048044
TYKDYVDLF	9	Unmodified	_TYKDYVDLF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.2846069335938	2	582.284597	1162.55464	0.22217	0.00012936	-0.37565	-0.00021873	-0.15348	-8.9369E-05	582.2844979121305	64.851	1.2534	64.84	64.521	65.775	-0.010979					142	45	6	0	0	0	0.001957	2	16148	16098;16148		110.55	58.284	1	2626200			50671	8602	28931	28932	62036;62037	62037					-0.02013400342048044
TYKFLTPYL	9	Unmodified	_TYKFLTPYL_					0	0	0		ENSG00000197557|ENST00000355689|TTC30A	ENSG00000197557|ENST00000355689|TTC30A	ENSG00000197557|ENST00000355689|TTC30A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.3143920898438	2	573.3157	1144.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.727	1	67.711	67.211	68.211	-0.016296								0	0	0	0.093871	1	17010	17010		47.749	27.334	1				50672	7975	28932	28933	62038	62038					0.05032370796948271
TYKGLEEVLV	10	Unmodified	_TYKGLEEVLV_					0	0	0			REV__ENST00000237841.5_1_12:3948629-3949796:+|nuORF	REV__ENST00000237841.5_1_12:3948629-3949796:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.2694702148438	2	575.821347	1149.62814	0.47492	0.00027347	0.63224	0.00036406	1.1072	0.00063752	575.821888448098	48.026	0.44353	48.069	47.987	48.43	0.04332					27	16	2	0	0	0	0.31629	1	11032	11032		10.074	0.6908	1	404470	+		50673	19483	28933	28934	62039	62039					0.05931148100421524
TYKNFFYLI	9	Unmodified	_TYKNFFYLI_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.820556640625	2	604.82115	1207.62775	0.36717	0.00022207	-1.0433	-0.00063103	-0.67617	-0.00040896	605.3222855137575	76.278	0.83723	76.278	75.996	76.833	0					65	29	3	0	0	0	0.12279	2	19671	19671;19755		34.932	14.518	1	407580			50674	441	28934	28935	62040;62041	62040					0.032237731712484674
TYKNFFYLI	9	Unmodified	_TYKNFFYLI_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.8206787109375	2	604.82115	1207.62775	0.3449	0.0002086	-0.75183	-0.00045472	-0.40693	-0.00024612	604.8206166395586	76.25	0.86975	76.304	76.02	76.89	0.053421					63	30	3	0	0	0	0.07944	3	19651	19651;19701;19782		41.956	20.419	1	411980			50675	441	28934	28935	62042;62043;62044	62042					0.032237731712484674
TYKNFFYLI	9	Unmodified	_TYKNFFYLI_					0	0	0		ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.8206176757812	2	604.82115	1207.62775	0.4209	0.00025457	-1.0475	-0.00063353	-0.62657	-0.00037896	604.8204691420524	76.309	0.80893	76.277	76.02	76.828	-0.031487					70	29	3	0	0	0	0.037019	2	19688	19688;19779		57.722	29.227	1	600530			50676	441	28934	28935	62045;62046	62045					0.032237731712484674
TYKPHFLN	8	Unmodified	_TYKPHFLN_					0	0	0			REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF	REV__ENST00000494000.1_1_3:172048292-172052928:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2856750488281	2	510.269084	1018.52362	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.45	1	37.537	37.037	38.037	0.08741								0	0	0	0.35466	1	7712	7712		12.532	0.89125	1		+		50677	13812	28935	28936	62047	62047					0.015094911343680906
TYKQLVAGNSP	11	Unmodified	_TYKQLVAGNSP_					0	0	0		nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	nc|ENSG00000124541|Q96EU6-2|RRP36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3427734375	2	589.31422	1176.61389	0.60627	0.00035728	-2.6132	-0.00154	-2.0069	-0.0011827	589.3125533995408	83.045	0.22515	83.045	82.975	83.2	0					10	8	2	0	0	0	0.32855	1	21753	21753		10.8	2.0541	1	96623			50678	3163	28936	28937	62048	62048					0.0326449567214695
TYKQVVDLI	9	Unmodified	_TYKQVVDLI_					0	0	0		ENSG00000115165|ENST00000264192|CYTIP;nc|ENSG00000115165|O60759-2|CYTIP	ENSG00000115165|ENST00000264192|CYTIP	ENSG00000115165|ENST00000264192|CYTIP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8108520507812	2	539.810782	1077.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.331	1	56.312	55.812	56.812	-0.019081								0	0	0	0.15213	1	13509	13509		34.222	10.432	1				50679	2612	28937	28938	62049	62049					0.07131182791590618
TYKVISNEF	9	Unmodified	_TYKVISNEF_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.7850341796875	2	550.784764	1099.55498	0.39093	0.00021532	-0.23565	-0.0001298	0.15528	8.5524E-05	550.7845660714321	46.038	1.9381	46.038	45.72	47.658	0					154	69	4	0	0	0	1.6305E-32	4	10342	10300;10342;10386;10437		251.75	169.86	1	8117500			50680	2544	28938	28939	62050;62051;62052;62053	62051					0.009180193778092871
TYKVISNEF	9	Unmodified	_TYKVISNEF_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.7848510742188	2	550.784764	1099.55498	0.30208	0.00016638	-0.12701	-6.9954E-05	0.17507	9.6427E-05	550.784612044594	45.837	1.5184	45.896	45.361	46.879	0.059837					160	54	5	0	0	0	1.597E-16	4	10271	10221;10271;10319;10373		208.35	145.78	1	8888100			50681	2544	28938	28939	62054;62055;62056;62057	62055					0.009180193778092871
TYKVISNEF	9	Unmodified	_TYKVISNEF_					0	0	0		nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF	nc|ENSG00000114062|Q05086-2|UBE3A	nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.7848510742188	2	550.784764	1099.55498	0.56234	0.00030973	-0.39525	-0.0002177	0.16709	9.2033E-05	550.7844476212961	45.797	2.1724	45.862	45.461	47.633	0.065048					188	78	5	0	0	0	3.8218E-17	3	10266	10215;10266;10320		222.22	150.29	1	9250900			50682	2544	28938	28939	62058;62059;62060	62059					0.009180193778092871
TYLDIPLVI	9	Unmodified	_TYLDIPLVI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47;USP47|p.D513Gfs*5|1|0.03|ENSG00000170242|chr11:11929524-11929525|-/GAGAAGGAAA|frameshift_variant	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.8104248046875	2	523.810251	1045.60595	0.30187	0.00015812	0.34221	0.00017925	0.64408	0.00033738	523.8102727620873	94.897	1.1337	94.897	94.564	95.698	0					234	107	3	0	0	0	0.0041925	3	25311	25271;25311;25349		92.822	64.335	1	1167900			50683	6433	28939	28940	62061;62062;62063	62062					0.08496968422650752
TYLDIPLVI	9	Unmodified	_TYLDIPLVI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47;USP47|p.D513Gfs*5|1|0.03|ENSG00000170242|chr11:11929524-11929525|-/GAGAAGGAAA|frameshift_variant	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.8104248046875	2	523.810251	1045.60595	0.35694	0.00018697	0.28281	0.00014814	0.63976	0.00033511	523.810220987448	94.769	1.2498	94.852	94.556	95.806	0.082779					238	111	3	0	0	0	0.0032391	5	25290	25244;25250;25290;25327;25368		100.37	64.327	1	1934400			50684	6433	28939	28940	62064;62065;62066;62067;62068	62066					0.08496968422650752
TYLDIPLVI	9	Unmodified	_TYLDIPLVI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47;USP47|p.D513Gfs*5|1|0.03|ENSG00000170242|chr11:11929524-11929525|-/GAGAAGGAAA|frameshift_variant	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.8103637695312	2	523.810251	1045.60595	0.55284	0.00028959	0.060819	3.1858E-05	0.61366	0.00032144	523.8101145749711	94.85	1.0567	94.848	94.541	95.598	-0.0020142					236	99	3	0	0	0	0.0017972	4	25315	25277;25315;25357;25397		112.59	76.549	1	1495300			50685	6433	28939	28940	62069;62070;62071;62072	62070					0.08496968422650752
TYLDKIKKF	9	Unmodified	_TYLDKIKKF_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3424682617188	2	578.342249	1154.66995	0.052822	3.0549E-05	0.21885	0.00012657	0.27167	0.00015712	578.3423123521826	39.889	0.66312	39.889	39.595	40.259	0					58	23	4	0	0	0	0.0044119	2	8432	8432;8481		91.085	72.938	1	578210			50686	692	28940	28941	62073;62074	62073					0.09879748579601255
TYLDKIKKF	9	Unmodified	_TYLDKIKKF_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.8432006835938	2	578.342249	1154.66995	0.33991	0.00019658	-0.077224	-4.4662E-05	0.26268	0.00015192	578.3421558969268	39.646	0.60897	39.739	39.442	40.051	0.09267					48	21	3	0	0	0	0.0031966	2	8381	8381;8431		100.71	70.072	1	566710			50687	692	28940	28941	62075;62076	62075					0.09879748579601255
TYLDKIKKF	9	Unmodified	_TYLDKIKKF_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.342529296875	2	578.342249	1154.66995	0.25483	0.00014738	-0.048767	-2.8204E-05	0.20606	0.00011918	578.3422351112511	39.667	0.55128	39.766	39.511	40.062	0.099407					48	19	3	0	0	0	0.0031966	2	8356	8356;8408		100.71	77.679	1	687370			50688	692	28940	28941	62077;62078	62077					0.09879748579601255
TYLDKVENI	9	Unmodified	_TYLDKVENI_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1;IFIT1|p.D345Cfs*2|1|0.12|ENSG00000185745|chr10:89403304-89403305|-/TTGTG|frameshift_variant	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2697143554688	2	547.790047	1093.56554	0.42862	0.00023479	-0.79239	-0.00043406	-0.36377	-0.00019927	547.789954042705	49.846	0.83899	49.846	49.542	50.381	0					55	30	3	0	0	0	0.097101	1	11534	11534		57.249	24.944	1	1281500			50689	7555	28941	28942	62079	62079					0.022500020322468117
TYLDKVENI	9	Unmodified	_TYLDKVENI_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1;IFIT1|p.D345Cfs*2|1|0.12|ENSG00000185745|chr10:89403304-89403305|-/TTGTG|frameshift_variant	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.269775390625	2	547.790047	1093.56554	0.61866	0.0003389	-0.9024	-0.00049433	-0.28374	-0.00015543	547.7898510563082	49.831	0.67163	49.875	49.621	50.292	0.044891					55	25	3	0	0	0	0.097101	1	11540	11540		57.249	29.62	1	1480300			50690	7555	28941	28942	62080	62080					0.022500020322468117
TYLDKVENI	9	Unmodified	_TYLDKVENI_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1;IFIT1|p.D345Cfs*2|1|0.12|ENSG00000185745|chr10:89403304-89403305|-/TTGTG|frameshift_variant	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.269775390625	2	547.790047	1093.56554	0.59561	0.00032627	-0.87007	-0.00047662	-0.27446	-0.00015035	547.7899110949838	49.813	0.71808	49.834	49.563	50.281	0.020691					54	26	3	0	0	0	0.097101	1	11527	11527		57.249	31.85	1	1218500			50691	7555	28941	28942	62081	62081					0.022500020322468117
TYLDNGVVF	9	Unmodified	_TYLDNGVVF_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2581176757812	2	514.258382	1026.50221	0.18136	9.3266E-05	-0.3033	-0.00015597	-0.12194	-6.2709E-05	514.2582943081624	69.349	1.2329	69.349	68.951	70.183	0					168	44	6	0	0	0	0.0079761	3	17461	17461;17550;17595		82.529	42.684	1	3317200			50692	259	28942	28943	62082;62083;62084	62082					-0.009979386849863658
TYLDNGVVF	9	Unmodified	_TYLDNGVVF_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2583618164062	2	514.258382	1026.50221	0.20927	0.00010762	-0.47642	-0.00024501	-0.26715	-0.00013739	514.2583006527047	69.261	1.2563	69.327	68.958	70.214	0.066048					158	44	5	0	0	0	0.0042138	1	17535	17535		92.653	44.307	1	2745900			50693	259	28942	28943	62085	62085					-0.009979386849863658
TYLDNGVVF	9	Unmodified	_TYLDNGVVF_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2581787109375	2	514.258382	1026.50221	0.11503	5.9153E-05	0.15897	8.1751E-05	0.27399	0.0001409	514.258319301229	69.361	1.3249	69.339	68.892	70.217	-0.022087					117	47	3	0	0	0	0.0042138	2	17553	17553;17606		92.653	44.307	1	3102100			50694	259	28942	28943	62086;62087	62086					-0.009979386849863658
TYLDQVKIRF	10	Unmodified	_TYLDQVKIRF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant;nc|ENSG00000127511|O75182-3|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.2433776855469	3	428.243317	1281.70812	-0.0073183	-3.134E-06	0.01141	4.8861E-06	0.0040914	1.7521E-06	428.2431563255694	58.742	0.72027	58.742	58.468	59.188	0					66	24	3	0	0	0	0.12791	1	14243	14243		30.431	20.667	1	1152800			50695	3324	28943	28944	62088	62088					0.0785363449426768
TYLDQVKIRF	10	Unmodified	_TYLDQVKIRF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant;nc|ENSG00000127511|O75182-3|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.24310302734375	3	428.243317	1281.70812	-0.011956	-5.12E-06	0.28214	0.00012082	0.27018	0.0001157	428.2431624286784	58.519	0.65438	58.61	58.393	59.047	0.091305					61	22	4	0	0	0	0.16839	1	14183	14183		25.997	18.96	1	816020			50696	3324	28943	28944	62089	62089					0.0785363449426768
TYLDQVKIRF	10	Unmodified	_TYLDQVKIRF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant;nc|ENSG00000127511|O75182-3|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.7524719238281	3	428.243317	1281.70812	-0.04981	-2.1331E-05	2.8253	0.0012099	2.7755	0.0011886	428.57953528861907	59.013	0.11083	59.105	59.015	59.126	0.091301					5	3	2	0	0	0	0.31889	1	14312	14312		5.7834	3.1522	1	126170			50697	3324	28943	28944	62090	62090					0.0785363449426768
TYLDQVKIRF	10	Unmodified	_TYLDQVKIRF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant;nc|ENSG00000127511|O75182-3|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.24334716796875	3	428.243317	1281.70812	0.065875	2.821E-05	0.060797	2.6036E-05	0.12667	5.4246E-05	428.24313395212346	58.802	0.64296	58.787	58.553	59.196	-0.014267					62	22	4	0	0	0	0.13784	2	14263	14263;14313		29.281	22.244	1	1204000			50698	3324	28943	28944	62091;62092	62091					0.0785363449426768
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.829345703125	2	539.828975	1077.6434	0.57835	0.00031221	0.055955	3.0206E-05	0.6343	0.00034242	539.8288979650864	44.367	1.3589	44.367	43.932	45.291	0					155	49	4	0	0	0	0.00024732	6	9814	9769;9814;9862;9907;9961;10012		132.38	58.773	1	12781000			50699	7691	28944	28945	62093;62094;62095;62096;62097;62098	62094					0.10768059688280118
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.829345703125	2	539.828975	1077.6434	0.55051	0.00029718	0.12298	6.6386E-05	0.67349	0.00036357	539.828949089749	44.11	1.3429	44.188	43.841	45.184	0.077515					156	49	4	0	0	0	8.0996E-05	6	9733	9690;9733;9780;9821;9872;9926		143.91	54.508	1	13442000			50700	7691	28944	28945	62099;62100;62101;62102;62103;62104	62100					0.10768059688280118
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8292236328125	2	539.828975	1077.6434	0.52312	0.0002824	0.098689	5.3275E-05	0.62181	0.00033567	539.8289244538619	44.058	1.3505	44.142	43.815	45.166	0.083996					165	49	4	0	0	0	8.0996E-05	5	9724	9676;9724;9769;9820;9871		143.91	58.268	1	13095000			50701	7691	28944	28945	62105;62106;62107;62108;62109	62106					0.10768059688280118
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7986450195312	2	539.828975	1077.6434	0.67938	0.00036675	-0.43465	-0.00023463	0.24474	0.00013212	539.8283875327437	45.499	0.31631	45.564	45.436	45.753	0.065048					17	11	2	0	0	0	0.24289	1	10165	10165		13.042	0	1	140650			50702	7691	28944	28945	62110	62110					0.10768059688280118
TYLEKAVEV	9	Unmodified	_TYLEKAVEV_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000527389.2_1_11:108198407-108199966:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2875366210938	2	526.28714	1050.55973	0.68845	0.00036232	0.085785	4.5147E-05	0.77423	0.00040747	526.2869623229658	44.946	1.0099	44.946	44.684	45.694	0					77	36	3	0	0	0	0.0048951	2	9993	9993;10020		87.258	27.184	1	1298400			50703	62	28945	28946	62111;62112	62111					0.03646903520575506
TYLEKAVEV	9	Unmodified	_TYLEKAVEV_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000527389.2_1_11:108198407-108199966:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.287353515625	2	526.28714	1050.55973	0.57406	0.00030212	-0.35373	-0.00018617	0.22033	0.00011595	526.2869336180248	44.737	1.0313	44.806	44.513	45.545	0.068569					74	36	5	0	0	0	0.0044119	1	9919	9919		91.085	33.363	1	1539100			50704	62	28945	28946	62113	62113					0.03646903520575506
TYLEKAVEV	9	Unmodified	_TYLEKAVEV_					0	0	0		ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant;ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000527389.2_1_11:108198407-108199966:+|nuORF	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.2874145507812	2	526.28714	1050.55973	0.68002	0.00035789	-0.3924	-0.00020652	0.28762	0.00015137	526.2868663774728	44.714	1.1554	44.789	44.502	45.657	0.075047					101	42	4	0	0	0	0.014058	2	9922	9922;9968		73.196	23.642	1	1575800			50705	62	28945	28946	62114;62115	62114					0.03646903520575506
TYLEKFQNL	9	Unmodified	_TYLEKFQNL_					0	0	0		ENSG00000103351|ENST00000576634|CLUAP1;nc|ENSG00000103351|Q96AJ1-2|CLUAP1;ENST00000572632.1_1_16:3569992-3580585:+|nuORF	ENSG00000103351|ENST00000576634|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3057861328125	2	578.305864	1154.59717	0.50388	0.0002914	-0.46866	-0.00027103	0.035226	2.0371E-05	578.3053997524581	54.116	0.57152	54.116	53.834	54.405	0					47	20	3	0	0	0	0.0023895	2	12817	12817;12868		107.1	49.378	1	572380			50706	1830	28946	28947	62116;62117	62116					0.026059947862222543
TYLEKFQNL	9	Unmodified	_TYLEKFQNL_					0	0	0		ENSG00000103351|ENST00000576634|CLUAP1;nc|ENSG00000103351|Q96AJ1-2|CLUAP1;ENST00000572632.1_1_16:3569992-3580585:+|nuORF	ENSG00000103351|ENST00000576634|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3052978515625	2	578.305864	1154.59717	0.40937	0.00023674	-0.44226	-0.00025576	-0.032893	-1.9022E-05	578.3054068882675	54.016	0.65935	54.079	53.852	54.511	0.063202					56	24	3	0	0	0	0.0013924	1	12787	12787		117.76	51.304	1	723980			50707	1830	28946	28947	62118	62118					0.026059947862222543
TYLEKFQNL	9	Unmodified	_TYLEKFQNL_					0	0	0		ENSG00000103351|ENST00000576634|CLUAP1;nc|ENSG00000103351|Q96AJ1-2|CLUAP1;ENST00000572632.1_1_16:3569992-3580585:+|nuORF	ENSG00000103351|ENST00000576634|CLUAP1	ENSG00000103351|ENST00000576634|CLUAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3058471679688	2	578.305864	1154.59717	0.47543	0.00027494	-0.43875	-0.00025373	0.03668	2.1212E-05	578.3053779425654	54.445	0.62041	54.429	54.113	54.734	-0.015923					52	21	3	0	0	0	0.0013924	1	12914	12914		117.76	51.304	1	701510			50708	1830	28946	28947	62119	62119					0.026059947862222543
TYLENKKE	8	Unmodified	_TYLENKKE_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2827758789062	2	512.769114	1023.52368	0.12272	6.2929E-05	-0.82837	-0.00042476	-0.70565	-0.00036183	512.768469130046	18.883	0.89659	18.883	18.535	19.431	0					41	31	2	0	0	0	0.34272	1	2048	2048		7.9102	1.187	1	48452	+		50709	19088	28947	28948	62120	62120					0.01285446343717922
TYLEVINTV	9	Unmodified	_TYLEVINTV_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2872314453125	2	526.28714	1050.55973	0.56786	0.00029885	0.035315	1.8586E-05	0.60317	0.00031744	526.2866611331169	68.529	0.89816	68.529	68.275	69.174	0					74	32	3	0	0	0	0.0045319	1	17282	17282		90.135	24.9	1	524040			50710	4544	28948	28949	62121	62121					0.03646903520575506
TYLEVINTV	9	Unmodified	_TYLEVINTV_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2872314453125	2	526.28714	1050.55973	0.42241	0.00022231	0.21075	0.00011092	0.63316	0.00033323	526.2867560373002	68.439	0.94035	68.511	68.271	69.211	0.071938					77	34	3	0	0	0	0.0008224	1	17262	17262		125.04	46.31	1	588560			50711	4544	28948	28949	62122	62122					0.03646903520575506
TYLEVINTV	9	Unmodified	_TYLEVINTV_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.2870483398438	2	526.28714	1050.55973	0.56476	0.00029723	0.079967	4.2086E-05	0.64473	0.00033931	526.2867147709254	68.582	0.87141	68.563	68.284	69.155	-0.01915					62	30	3	0	0	0	0.00012746	1	17285	17285		136.39	57.664	1	550790			50712	4544	28948	28949	62123	62123					0.03646903520575506
TYLHCQRRLWR	11	Unmodified	_TYLHCQRRLWR_					0	0	0		ENST00000544855.5_1_4:140222009-140222060:-|nuORF	ENST00000544855.5_1_4:140222009-140222060:-|nuORF	ENST00000544855.5_1_4:140222009-140222060:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.9089660644531	3	511.273616	1530.79902	0.2202	0.00011258	2.7028	0.0013819	2.923	0.0014945	511.274703319477	31.658	0.55867	31.658	31.423	31.982	0					28	19	2	0	0	0	0.33334	1	6029	6029		0.40827	0.32491	1	240150			50713	11749	28949	28950	62124	62124					0.054851999907441495
TYLHCQRRLWR	11	Unmodified	_TYLHCQRRLWR_					0	0	0		ENST00000544855.5_1_4:140222009-140222060:-|nuORF	ENST00000544855.5_1_4:140222009-140222060:-|nuORF	ENST00000544855.5_1_4:140222009-140222060:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	511.273616	1530.79902	0.12886	6.5883E-05	2.9077	0.0014866	3.0366	0.0015525	511.27496026929214	31.506	0.33745	31.548	31.399	31.737	0.042366	-0.054768	8.7487E-05	NaN	0.40827	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354350			50714	11749	28949	28950							0.054851999907441495
TYLHHVGWF	9	Unmodified	_TYLHHVGWF_					0	0	0		HERPUD1|p.M300T|1|0.33|ENSG00000051108|chr16:56940239-56940239|T/C|missense_variant	HERPUD1|p.M300T|1|0.33|ENSG00000051108|chr16:56940239-56940239|T/C|missense_variant	HERPUD1|p.M300T|1|0.33|ENSG00000051108|chr16:56940239-56940239|T/C|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.2861938476562	2	580.287808	1158.56106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.875	1	80.875	80.375	81.375	0								0	0	0	0.25631	1	21042	21042		4.3292	0.73274	1				50715	12395	28950	28951	62125	62125					-0.01187417600021945
TYLHHVGWF	9	Unmodified	_TYLHHVGWF_					0	0	0		HERPUD1|p.M300T|1|0.33|ENSG00000051108|chr16:56940239-56940239|T/C|missense_variant	HERPUD1|p.M300T|1|0.33|ENSG00000051108|chr16:56940239-56940239|T/C|missense_variant	HERPUD1|p.M300T|1|0.33|ENSG00000051108|chr16:56940239-56940239|T/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.2885131835938	2	580.287808	1158.56106	0.29144	0.00016912	0.21425	0.00012433	0.50569	0.00029345	580.2877249499413	74.661	1.3175	74.713	73.977	75.295	0.052361					122	46	4	0	0	0	0.24581	1	18928	18928		16.942	16.942	1	3335100			50716	12395	28950	28951	62126	62126					-0.01187417600021945
TYLHWDMASL	10	Unmodified	_TYLHWDMASL_					0	0	0			REV__ENSG00000115649|ENST00000360507|CNPPD1	REV__ENSG00000115649|ENST00000360507|CNPPD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.1806945800781	3	412.862108	1235.56449	-0.1105	-4.5622E-05	-3.1266	-0.0012909	-3.2371	-0.0013365	412.86095205648917	27.098	0.48282	27.098	26.871	27.354	0					20	16	2	0	0	0	0.31746	1	4560	4560		9.544	0	1	54788	+		50717	14889	28951	28952	62127	62127					-0.04386535608318809
TYLITQVIF	9	Unmodified	_TYLITQVIF_					0	0	0			REV__ENSG00000256870|ENST00000536262|SLC5A8	REV__ENSG00000256870|ENST00000536262|SLC5A8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2615966796875	2	549.3157	1096.61685	0.41609	0.00022857	-3.4853	-0.0019145	-3.0692	-0.001686	549.3133256061458	75.888	0.45937	75.941	75.73	76.189	0.053413					23	16	2	0	0	0	0.22596	1	19454	19454		21.747	4.8044	1	234260	+		50718	19256	28952	28953	62128	62128					0.07240370796921525
TYLITQVIF	9	Unmodified	_TYLITQVIF_					0	0	0			REV__ENSG00000256870|ENST00000536262|SLC5A8	REV__ENSG00000256870|ENST00000536262|SLC5A8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	549.3157	1096.61685	0.1356	7.4487E-05	-3.4838	-0.0019137	-3.3482	-0.0018392	549.3133250375945	75.953	0.43004	75.953	75.711	76.141	0	0.0067017	-6.0579E-05	NaN	21.747	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182170	+		50719	19256	28952	28953							0.07240370796921525
TYLITQVIF	9	Unmodified	_TYLITQVIF_					0	0	0			REV__ENSG00000256870|ENST00000536262|SLC5A8	REV__ENSG00000256870|ENST00000536262|SLC5A8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.3157	1096.61685	0.42261	0.00023215	-3.3878	-0.001861	-2.9652	-0.0016288	549.3135525113237	75.976	0.30013	75.944	75.777	76.077	-0.031487	-0.001854	4.4875E-05	NaN	21.747	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257090	+		50720	19256	28952	28953							0.07240370796921525
TYLIVTSLL	9	Unmodified	_TYLIVTSLL_					0	0	0		nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1;nc|ENSG00000170540|Q15041-3|ARL6IP1	nc|ENSG00000170540|Q15041-2|ARL6IP1	nc|ENSG00000170540|Q15041-2|ARL6IP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.810791015625	2	511.810251	1021.60595	0.33299	0.00017043	1.0702	0.00054772	1.4032	0.00071815	511.8102566081762	89.394	0.79891	89.484	89.122	89.921	0.090569					76	53	3	0	0	0	0.07432	1	23663	23663		43.858	11.553	1	144150			50721	6462	28953	28954	62129	62129					0.09600968422682854
TYLIVTSLL	9	Unmodified	_TYLIVTSLL_					0	0	0		nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1;nc|ENSG00000170540|Q15041-3|ARL6IP1	nc|ENSG00000170540|Q15041-2|ARL6IP1	nc|ENSG00000170540|Q15041-2|ARL6IP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	511.810251	1021.60595	0.41002	0.00020985	0.63881	0.00032695	1.0488	0.0005368	511.8101703465633	89.556	0.88005	89.556	89.072	89.952	0	0.015964	-3.9901E-05	NaN	43.858	76	55	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93143			50722	6462	28953	28954							0.09600968422682854
TYLIVTSLL	9	Unmodified	_TYLIVTSLL_					0	0	0		nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1;nc|ENSG00000170540|Q15041-3|ARL6IP1	nc|ENSG00000170540|Q15041-2|ARL6IP1	nc|ENSG00000170540|Q15041-2|ARL6IP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	511.810251	1021.60595	0.34136	0.00017471	0.48561	0.00024854	0.82697	0.00042325	511.81015129675677	89.581	0.64578	89.58	89.306	89.952	-0.00080872	0.039724	-0.00019673	NaN	43.858	62	51	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162670			50723	6462	28953	28954							0.09600968422682854
TYLKENMK	8	Unmodified	_TYLKENMK_					0	0	0			REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.8091430664062	2	513.76806	1025.52157	0.60643	0.00031156	-0.89176	-0.00045816	-0.28533	-0.0001466	513.7675998983617	44.728	0.16541	44.728	44.605	44.771	0					6	5	2	0	0	0	0.34272	1	9912	9912		7.9102	3.0131	1	122190	+		50724	13936	28954	28955	62130	62130					0.00982694334243206
TYLKENMK	8	Unmodified	_TYLKENMK_					0	0	0			REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	513.76806	1025.52157	0.34564	0.00017758	-1.3869	-0.00071252	-1.0412	-0.00053494	513.7674179122071	44.889	0.29519	44.957	44.711	45.006	0.068573	0.1148	-0.00046344	NaN	7.9102	11	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109740	+		50725	13936	28954	28955							0.00982694334243206
TYLLCLILK	9	Unmodified	_TYLLCLILK_					0	0	0		ENST00000394123.7_1_5:151184442-151184631:+|nuORF	ENST00000394123.7_1_5:151184442-151184631:+|nuORF	ENST00000394123.7_1_5:151184442-151184631:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3303833007812	2	540.330296	1078.64604	0.38978	0.00021061	-0.13774	-7.4424E-05	0.25205	0.00013619	540.330084290818	76.449	1.7327	76.502	75.862	77.595	0.053413					184	61	4	0	0	0	0.31038	1	19835	19835		7.2892	7.2892	1	2242700			50726	10063	28955	28956	62131	62131					0.1098619182157563
TYLLSVYRL	9	Unmodified	_TYLLSVYRL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;ENST00000484220.1_1_22:21119034-21147510:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3265991210938	2	564.326599	1126.63865	0.2381	0.00013437	0.17504	9.8779E-05	0.41314	0.00023315	564.3265089846416	67.061	1.0149	67.061	66.717	67.732	0					94	35	4	0	0	0	0.044188	1	16876	16876		76.825	49.196	1	1038400			50727	8538	28956	28957	62132	62132					0.08039175545513899
TYLLSVYRL	9	Unmodified	_TYLLSVYRL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;ENST00000484220.1_1_22:21119034-21147510:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3268432617188	2	564.326599	1126.63865	0.3366	0.00018995	-0.08652	-4.8825E-05	0.25008	0.00014113	564.3264854649515	66.964	1.072	67.047	66.767	67.839	0.083832					82	37	3	0	0	0	0.057684	1	16788	16788		58.679	47.855	1	990490			50728	8538	28956	28957	62133	62133					0.08039175545513899
TYLLSVYRL	9	Unmodified	_TYLLSVYRL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;ENST00000484220.1_1_22:21119034-21147510:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.3265380859375	2	564.326599	1126.63865	0.082841	4.675E-05	0.18865	0.00010646	0.27149	0.00015321	564.3266481677759	67.1	1.1787	67.084	66.762	67.941	-0.016296					80	40	3	0	0	0	0.10135	1	16872	16872		36.127	13.391	1	1156400			50729	8538	28956	28957	62134	62134					0.08039175545513899
TYLMLANHL	9	Oxidation (M)	_TYLM(Oxidation (M))LANHL_		TYLM(1)LANHL		TYLM(220)LANHL	0	0	1		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.28173828125	2	546.281334	1090.54812	0.73992	0.0004042	-1.6082	-0.00087852	-0.86827	-0.00047432	546.2805927893352	54.464	1.887	54.464	54.105	55.992	0					158	68	5	0	0	0	3.2167E-17	5	12941	12897;12941;12983;13032;13286		222.91	164.23	1	17432000			50730	2568	28957	28958	62135;62136;62137;62138;62139	62136		320			0.006463832255803936
TYLMLANHL	9	Oxidation (M)	_TYLM(Oxidation (M))LANHL_		TYLM(1)LANHL		TYLM(210)LANHL	0	0	1		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.2811279296875	2	546.281334	1090.54812	0.83188	0.00045444	-1.603	-0.00087571	-0.77115	-0.00042127	546.2805947486041	54.365	3.6233	54.428	54.142	57.766	0.063202					254	134	4	0	0	0	1.8227E-16	5	12904	12854;12904;12953;13003;13048		205.78	148.31	1	18991000			50731	2568	28957	28958	62140;62141;62142;62143;62144	62141		320			0.006463832255803936
TYLMLANHL	9	Oxidation (M)	_TYLM(Oxidation (M))LANHL_					0	0	1		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	546.281334	1090.54812	0.85115	0.00046497	-1.6057	-0.00087718	-0.75458	-0.00041221	546.2805345550877	54.686	1.9387	54.67	54.251	56.19	-0.015923	0.14935	-7.6633E-08	NaN	222.91	171	70	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19803000			50732	2568	28957	28958				320			0.006463832255803936
TYLNSLNNAI	10	Unmodified	_TYLNSLNNAI_					0	0	0		nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;ENST00000487109.5_1_9:139906084-139911410:-|nuORF	nc|ENSG00000107331|Q9BZC7|ABCA2	nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3032836914062	2	561.793121	1121.57169	0.36262	0.00020372	2.2334	0.0012547	2.596	0.0014584	561.7942404608217	65.531	0.37803	65.52	65.372	65.75	-0.011337					21	13	2	0	0	0	0.30555	1	16313	16313		20.415	8.7742	1	102260			50733	2121	28958	28959	62145	62145					0.015765202637339826
TYLNWLVRM	9	Oxidation (M)	_TYLNWLVRM(Oxidation (M))_		TYLNWLVRM(1)		TYLNWLVRM(48)	0	0	1		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.7699584960938	2	606.315709	1210.61686	0.69672	0.00042243	-0.28149	-0.00017067	0.41523	0.00025176	606.3155022743819	66.114	0.44534	66.114	65.871	66.317	0					23	15	2	0	0	0	0.1335	1	16489	16489		47.594	30.481	1	142240			50734	1819	28959	28960	62146	62146		220			0.019980475252850738
TYLNWLVRM	9	Oxidation (M)	_TYLNWLVRM(Oxidation (M))_		TYLNWLVRM(1)		TYLNWLVRM(83)	0	0	1		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.770263671875	2	606.315709	1210.61686	0.78142	0.00047379	-0.23312	-0.00014135	0.5483	0.00033244	606.31532316943	65.951	0.32774	66.039	65.811	66.139	0.088303					16	11	2	0	0	0	0.027994	1	16435	16435		83.429	66.316	1	166480			50735	1819	28959	28960	62147	62147		220			0.019980475252850738
TYLNYVVHL	9	Unmodified	_TYLNYVVHL_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.3030395507812	2	561.303124	1120.5917	0.11852	6.6526E-05	-0.15868	-8.9069E-05	-0.04016	-2.2542E-05	561.303022836427	65.299	0.82404	65.299	65.047	65.871	0					65	29	3	0	0	0	0.0051609	1	16328	16328		92.653	58.252	1	1371700			50736	7792	28960	28961	62148	62148					0.036223159943801875
TYLNYVVHL	9	Unmodified	_TYLNYVVHL_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3031005859375	2	561.303124	1120.5917	-0.0064432	-3.6166E-06	-0.090279	-5.0674E-05	-0.096722	-5.429E-05	561.3031453913941	65.174	1.1623	65.263	65.006	66.169	0.088875					76	42	3	0	0	0	0.00027177	1	16262	16262		126.57	82.708	1	1792600			50737	7792	28960	28961	62149	62149					0.036223159943801875
TYLNYVVHL	9	Unmodified	_TYLNYVVHL_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3226928710938	2	561.303124	1120.5917	0.066225	3.7172E-05	-0.10874	-6.1035E-05	-0.042514	-2.3863E-05	561.3030838719362	65.069	1.2027	65.057	64.69	65.892	-0.011337					92	43	4	0	0	0	0.0037772	2	16329	16290;16329		96.111	67.029	1	2325800			50738	7792	28960	28961	62150;62151	62151					0.036223159943801875
TYLPAGQSVLL	11	Unmodified	_TYLPAGQSVLL_					0	0	0		nc|ENSG00000167085|P35232-2|PHB1;ENSG00000167085|ENST00000300408|PHB1	nc|ENSG00000167085|P35232-2|PHB1	nc|ENSG00000167085|P35232-2|PHB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.2894287109375	2	581.329339	1160.64412	0.34386	0.0001999	-1.3283	-0.00077216	-0.98441	-0.00057227	581.3283334569606	71.638	0.8364	71.638	71.431	72.267	0					65	29	3	0	0	0	0.2115	1	18220	18220		46.475	24.938	1	639160			50739	6145	28961	28962	62152	62152					0.07022854337355966
TYLPAGQSVLL	11	Unmodified	_TYLPAGQSVLL_					0	0	0		nc|ENSG00000167085|P35232-2|PHB1;ENSG00000167085|ENST00000300408|PHB1	nc|ENSG00000167085|P35232-2|PHB1	nc|ENSG00000167085|P35232-2|PHB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.8303833007812	2	581.329339	1160.64412	0.31812	0.00018493	-1.0043	-0.00058385	-0.68622	-0.00039892	581.3284686117432	71.62	0.71152	71.677	71.459	72.17	0.056572					60	25	3	0	0	0	0.091141	1	18254	18254		41.347	19.81	1	599010			50740	6145	28961	28962	62153	62153					0.07022854337355966
TYLPAGQSVLL	11	Unmodified	_TYLPAGQSVLL_					0	0	0		nc|ENSG00000167085|P35232-2|PHB1;ENSG00000167085|ENST00000300408|PHB1	nc|ENSG00000167085|P35232-2|PHB1	nc|ENSG00000167085|P35232-2|PHB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	581.329339	1160.64412	0.39588	0.00023014	-1.494	-0.0008685	-1.0981	-0.00063836	581.3283335989746	71.651	0.82925	71.623	71.426	72.256	-0.027275	-0.022621	-0.00022035	NaN	41.347	62	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	655410			50741	6145	28961	28962							0.07022854337355966
TYLPALFTT	9	Unmodified	_TYLPALFTT_					0	0	0		nc|ENSG00000181722|Q9HC78-2|ZBTB20;ENSG00000181722|ENST00000675478|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	nc|ENSG00000181722|Q9HC78-2|ZBTB20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7684936523438	2	513.778951	1025.54335	0.15011	7.7121E-05	-1.1868	-0.00060977	-1.0367	-0.00053265	513.7782710867522	73.946	0.74782	73.915	73.61	74.358	-0.030655					56	26	3	0	0	0	0.22188	1	18915	18915		20.454	4.6064	1	993830			50742	7244	28962	28963	62154	62154					0.03159822354473363
TYLPAPEGLKF	11	Unmodified	_TYLPAPEGLKF_					0	0	0		nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC	nc|ENSG00000041982|P24821-4|TNC	nc|ENSG00000041982|P24821-4|TNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.3375244140625	2	618.337164	1234.65977	0.19941	0.0001233	0.11582	7.1614E-05	0.31523	0.00019492	618.3371725355036	65.405	0.96764	65.405	65.1	66.068	0					99	34	4	0	0	0	0.016706	3	16282	16282;16326;16402		62.869	49.254	1	1813400			50743	608	28963	28964	62155;62156;62157	62155					0.05183140854364865
TYLPAPEGLKF	11	Unmodified	_TYLPAPEGLKF_					0	0	0		nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC;nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC	nc|ENSG00000041982|P24821-4|TNC	nc|ENSG00000041982|P24821-4|TNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.33740234375	2	618.337164	1234.65977	0.15279	9.4476E-05	0.19013	0.00011756	0.34292	0.00021204	618.3371818145608	65.416	0.9951	65.404	65.098	66.093	-0.011337					100	35	4	0	0	0	0.0094061	4	16327	16270;16280;16327;16382		70.929	56.523	1	2035100			50744	608	28963	28964	62158;62159;62160;62161	62160					0.05183140854364865
TYLPEAFME	9	Unmodified	_TYLPEAFME_					0	0	0		PTPDC1|p.R743Kfs*9|1|0.72|ENSG00000158079|chr9:94107900-94107901|-/A|frameshift_variant;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1;nc|ENSG00000158079|A2A3K4|PTPDC1	PTPDC1|p.R743Kfs*9|1|0.72|ENSG00000158079|chr9:94107900-94107901|-/A|frameshift_variant	PTPDC1|p.R743Kfs*9|1|0.72|ENSG00000158079|chr9:94107900-94107901|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2946166992188	2	550.752075	1099.4896	0.20579	0.00011334	0.051288	2.8247E-05	0.25708	0.00014159	550.7520138176322	62.08	0.78121	62.177	61.79	62.572	0.096985					43	28	2	0	0	0	0.24311	1	15192	15192		16.942	4.4107	1	214510			50745	5338	28964	28965	62162	62162					-0.05616718139549448
TYLPPNVKA	9	Unmodified	_TYLPPNVKA_					0	0	0			REV__nc|ENSG00000196372|Q8WXK3-2|ASB13	REV__nc|ENSG00000196372|Q8WXK3-2|ASB13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.30535888671875	2	501.784567	1001.55458	0.55847	0.00028023	-2.9693	-0.0014899	-2.4108	-0.0012097	501.7830508134835	54.535	0.24345	54.52	54.361	54.605	-0.015923					9	7	2	0	0	0	0.22596	1	12953	12953		15.847	0	1	66970	+		50746	18644	28965	28966	62163	62163					0.05386644448606148
TYLPQSYLI	9	Unmodified	_TYLPQSYLI_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.297607421875	2	549.297507	1096.58046	0.43867	0.00024096	0.03781	2.0769E-05	0.47648	0.00026173	549.2974347386007	74.129	1.8262	74.129	73.766	75.592	0					179	63	5	0	0	0	0.0016712	3	18968	18968;19017;19187		114.2	61.933	1	9148900			50747	3949	28966	28967	62164;62165;62166	62164					0.03603493900232024
TYLPQSYLI	9	Unmodified	_TYLPQSYLI_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2977294921875	2	549.297507	1096.58046	0.4206	0.00023103	0.0085393	4.6906E-06	0.42914	0.00023573	549.2974667538417	74.049	1.5754	74.102	73.747	75.323	0.052361					185	55	4	0	0	0	0.0016712	2	18943	18943;18987		114.2	52.844	1	11005000			50748	3949	28966	28967	62167;62168	62167					0.03603493900232024
TYLPQSYLI	9	Unmodified	_TYLPQSYLI_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2615966796875	2	549.297507	1096.58046	0.48429	0.00026602	-2.3256	-0.0012775	-1.8414	-0.0010115	549.2965418974375	75.506	0.64609	75.558	75.269	75.915	0.052361					59	23	4	0	0	0	0.18936	1	19454	19454		32.786	11.039	1	163890			50749	3949	28966	28967	62169	62169					0.03603493900232024
TYLPQSYLI	9	Unmodified	_TYLPQSYLI_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2976684570312	2	549.297507	1096.58046	0.49041	0.00026938	-0.030902	-1.6974E-05	0.45951	0.00025241	549.297405814612	74.16	2.0351	74.129	73.768	75.804	-0.030655					184	73	4	0	0	0	0.0016712	3	18959	18959;19007;19161		114.2	64.269	1	10327000			50750	3949	28966	28967	62170;62171;62172	62170					0.03603493900232024
TYLPQTYII	9	Unmodified	_TYLPQTYII_					0	0	0		nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.305419921875	2	556.305332	1110.59611	0.58878	0.00032754	-0.51518	-0.0002866	0.073608	4.0949E-05	556.3051628648801	74.518	1.7848	74.518	74.066	75.85	0					190	62	5	0	0	0	0.0010968	4	19091	19044;19053;19091;19244		121.53	75.513	1	6275600			50751	3919	28967	28968	62173;62174;62175;62176	62175					0.045237804172757023
TYLPQTYII	9	Unmodified	_TYLPQTYII_					0	0	0		nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3052368164062	2	556.305332	1110.59611	0.30046	0.00016715	-0.29674	-0.00016508	0.0037231	2.0712E-06	556.305329750293	74.435	1.8003	74.487	74.007	75.807	0.052361					194	64	4	0	0	0	0.0010968	3	19072	19024;19072;19215		121.53	75.513	1	6811200			50752	3919	28967	28968	62177;62178;62179	62178					0.045237804172757023
TYLPQTYII	9	Unmodified	_TYLPQTYII_					0	0	0		nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C;ENSG00000135916|ENST00000326427|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3054809570312	2	556.305332	1110.59611	0.42859	0.00023843	-0.45425	-0.0002527	-0.025666	-1.4278E-05	556.3052557081971	74.579	1.7978	74.548	74.032	75.83	-0.030655					193	65	4	0	0	0	0.0010968	4	19104	19003;19053;19104;19237		121.53	75.513	1	6841500			50753	3919	28967	28968	62180;62181;62182;62183	62182					0.045237804172757023
TYLPQVPLP	9	Unmodified	_TYLPQVPLP_					0	0	0		nc|ENSG00000206199|A6NFN9|ANKUB1;ENSG00000206199|ENST00000446160|ANKUB1	nc|ENSG00000206199|A6NFN9|ANKUB1	nc|ENSG00000206199|A6NFN9|ANKUB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2848510742188	2	514.294768	1026.57498	0.79607	0.00040941	1.7109	0.00087989	2.5069	0.0012893	514.2943609795326	56.248	0.61173	56.248	56.101	56.713	0					50	22	4	0	0	0	0.23007	1	13528	13528		19.257	1.122	1	571950			50754	8317	28968	28969	62184	62184					0.06275815108415372
TYLPQVPLP	9	Unmodified	_TYLPQVPLP_					0	0	0		nc|ENSG00000206199|A6NFN9|ANKUB1;ENSG00000206199|ENST00000446160|ANKUB1	nc|ENSG00000206199|A6NFN9|ANKUB1	nc|ENSG00000206199|A6NFN9|ANKUB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	514.294768	1026.57498	0.87257	0.00044876	-0.5332	-0.00027422	0.33937	0.00017454	514.2941614683002	56.4	0.37926	56.381	56.213	56.592	-0.019081	0.066505	-0.00053254	NaN	19.257	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	542090			50755	8317	28968	28969							0.06275815108415372
TYLPQVSHYRF	11	Unmodified	_TYLPQVSHYRF_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;EXOC6B|p.F423Lfs*5|1|0.34|ENSG00000144036|chr2:72498522-72498522|A/-|frameshift_variant	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.9415283203125	3	470.910338	1409.70918	0.041114	1.9361E-05	0.82167	0.00038693	0.86278	0.00040629	470.910801160205	51.894	0.64312	51.893	51.631	52.274	-0.00080872					53	23	3	0	0	0	0.33085	1	12058	12058		8.2864	5.8516	1	431560			50756	4560	28969	28970	62185	62185					0.02071848863147352
TYLPTFETTI	10	Unmodified	_TYLPTFETTI_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8292236328125	2	593.305529	1184.59651	0.44201	0.00026225	0.23376	0.00013869	0.67577	0.00040094	593.3056751499389	76.57	0.99746	76.57	76.31	77.308	0					45	36	2	0	0	0	0.018978	1	19725	19725		89.401	49.451	1	524980			50757	5119	28970	28971	62186	62186					0.011591553464768367
TYLPTFETTI	10	Unmodified	_TYLPTFETTI_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8292846679688	2	593.305529	1184.59651	0.26986	0.00016011	0.54545	0.00032362	0.81531	0.00048373	593.3058344271042	76.524	0.82891	76.577	76.289	77.118	0.053413					46	29	2	0	0	0	0.050435	1	19713	19713		82.529	46.402	1	577150			50758	5119	28970	28971	62187	62187					0.011591553464768367
TYLPTNASLSF	11	Unmodified	_TYLPTNASLSF_					0	0	0		nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;nc|ENSG00000141736|P04626-6|ERBB2;ERBB2|p.N388Qfs*14|1|0.33|ENSG00000141736|chr17:39715296-39715297|-/C|frameshift_variant;ENST00000584908.5_1_17:37856482-37868536:+|nuORF	nc|ENSG00000141736|P04626-5|ERBB2	nc|ENSG00000141736|P04626-5|ERBB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.3092041015625	2	607.308603	1212.60265	0.57863	0.00035141	1.1483	0.00069736	1.7269	0.0010488	607.309367446582	72.64	0.41081	72.694	72.326	72.737	0.053833					18	14	2	0	0	0	0.00039266	1	18517	18517		105.35	63.033	1	405780			50759	4408	28971	28972	62188	62188					0.004856735779867449
TYLPTSPLL	9	Unmodified	_TYLPTSPLL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.78704833984375	2	502.786776	1003.559	0.2064	0.00010377	-0.16249	-8.1696E-05	0.04391	2.2078E-05	502.7867206497442	73.918	2.634	73.918	73.105	75.739	0					224	92	5	0	0	0	5.2996E-06	4	18915	18915;18969;19018;19301		156.16	59.081	1	11824000			50760	1112	28972	28973	62189;62190;62191;62192	62189					0.057361088715197184
TYLPTSPLL	9	Unmodified	_TYLPTSPLL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.786865234375	2	502.786776	1003.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.054	1	74.107	73.607	74.607	0.052361								0	0	0	1.2556E-10	1	18950	18950		141.83	44.752	1				50761	1112	28972	28973	62193	62193					0.057361088715197184
TYLPTSPLL	9	Unmodified	_TYLPTSPLL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.786865234375	2	502.786776	1003.559	0.29146	0.00014654	-0.2596	-0.00013052	0.031861	1.6019E-05	502.78667972968697	73.942	2.6497	73.911	73.18	75.83	-0.030655					240	96	4	0	0	0	3.327E-09	4	18922	18922;18968;19019;19293		180.01	79.638	1	12304000			50762	1112	28972	28973	62194;62195;62196;62197	62194					0.057361088715197184
TYLQALPYF	9	Unmodified	_TYLQALPYF_					0	0	0		nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;ENST00000478866.5_1_1:161172175-161179984:+|nuORF	nc|ENSG00000158864|O75306-2|NDUFS2	nc|ENSG00000158864|O75306-2|NDUFS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.7843017578125	2	558.292225	1114.5699	0.55225	0.00030832	-0.82727	-0.00046186	-0.27503	-0.00015354	558.2913558407897	84.243	0.58122	84.243	83.973	84.555	0					27	22	2	0	0	0	0.18803	1	22064	22064		25.399	1.3787	1	130870			50763	5378	28973	28974	62198	62198					0.01719511245778449
TYLQDESQL	9	Unmodified	_TYLQDESQL_					0	0	0			REV__ENSG00000136014|ENST00000258499|USP44	REV__ENSG00000136014|ENST00000258499|USP44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3536987304688	2	548.761486	1095.50842	0.35337	0.00019392	-1.0518	-0.00057719	-0.69844	-0.00038328	548.7606166813665	52.062	0.34447	52.062	51.836	52.18	0					20	12	2	0	0	0	0.21538	1	12169	12169		26.268	11.863	1	272180	+		50764	15780	28974	28975	62199	62199					-0.035514652441406724
TYLQDESQL	9	Unmodified	_TYLQDESQL_					0	0	0			REV__ENSG00000136014|ENST00000258499|USP44	REV__ENSG00000136014|ENST00000258499|USP44	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.761486	1095.50842	0.52375	0.00028742	-0.34116	-0.00018721	0.1826	0.0001002	548.7606491092213	51.938	0.43616	51.989	51.846	52.282	0.050575	-0.068799	7.4193E-05	NaN	26.268	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178800	+		50765	15780	28974	28975							-0.035514652441406724
TYLRAGPTVT	10	Unmodified	_TYLRAGPTVT_					0	0	0			REV__ENSG00000187492|ENST00000412678|CDHR4	REV__ENSG00000187492|ENST00000412678|CDHR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.31396484375	2	539.798206	1077.58186	0.60879	0.00032863	-1.3115	-0.00070796	-0.70274	-0.00037934	539.7981949404959	46.553	0.72614	46.606	46.388	47.114	0.052574					47	26	3	0	0	0	0.29589	1	10633	10633		17.113	0	1	714080	+		50766	18505	28975	28976	62200	62200					0.0461712798901317
TYLRKIPRF	9	Unmodified	_TYLRKIPRF_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000485727.5_1_3:123675165-123675318:-|nuORF;ENST00000438440.2_1_3:123674869-123680035:-|nuORF;nc|ENSG00000175455|Q49A88-6|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3621826171875	2	597.361308	1192.70806	0.45255	0.00027034	0.55185	0.00032965	1.0044	0.00059999	597.3614350683819	38.147	0.86401	38.147	37.707	38.571	0					67	30	3	0	0	0	0.069366	1	7947	7947		45.7	34.876	1	502420			50767	6864	28976	28977	62201	62201					0.11941679284927886
TYLRKIPRF	9	Unmodified	_TYLRKIPRF_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000485727.5_1_3:123675165-123675318:-|nuORF;ENST00000438440.2_1_3:123674869-123680035:-|nuORF;nc|ENSG00000175455|Q49A88-6|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.3616333007812	2	597.361308	1192.70806	0.556	0.00033213	0.39632	0.00023674	0.95231	0.00056888	597.361328274632	38.071	0.90095	38.162	37.693	38.594	0.090881					70	32	3	0	0	0	0.047483	1	7917	7917		53.833	37.986	1	493040			50768	6864	28976	28977	62202	62202					0.11941679284927886
TYLRKIPRF	9	Unmodified	_TYLRKIPRF_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000485727.5_1_3:123675165-123675318:-|nuORF;ENST00000438440.2_1_3:123674869-123680035:-|nuORF;nc|ENSG00000175455|Q49A88-6|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.36181640625	2	597.361308	1192.70806	0.35489	0.000212	0.53644	0.00032045	0.89133	0.00053245	597.3614681443687	38.01	0.96417	38.107	37.578	38.542	0.097527					68	34	3	0	0	0	0.063853	1	7907	7907		47.749	31.902	1	538340			50769	6864	28976	28977	62203	62203					0.11941679284927886
TYLSIIHSL	9	Unmodified	_TYLSIIHSL_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.307861328125	2	523.797675	1045.5808	0.69474	0.0003639	-1.5402	-0.00080674	-0.84543	-0.00044283	523.7973750649186	66.127	0.7587	66.127	65.871	66.63	0					60	26	3	0	0	0	0.079752	1	16651	16651		41.84	5.7126	1	531460			50770	3688	28977	28978	62204	62204					0.05982913620096042
TYLSIIHSL	9	Unmodified	_TYLSIIHSL_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3138427734375	2	523.797675	1045.5808	0.67984	0.0003561	-1.4376	-0.00075303	-0.75779	-0.00039693	523.7974067332474	66.004	0.65941	66.088	65.834	66.494	0.083832					57	23	3	0	0	0	0.00033443	1	16451	16451		131.27	34.983	1	563360			50771	3688	28977	28978	62205	62205					0.05982913620096042
TYLSIIHSL	9	Unmodified	_TYLSIIHSL_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3056640625	2	523.797675	1045.5808	0.53296	0.00027916	-1.2253	-0.00064181	-0.69234	-0.00036265	523.7974914896134	66.107	0.77504	66.093	65.859	66.634	-0.013588					66	27	3	0	0	0	0.0026202	1	16518	16518		111.29	26.015	1	601570			50772	3688	28977	28978	62206	62206					0.05982913620096042
TYLTSIPSL	9	Unmodified	_TYLTSIPSL_					0	0	0		nc|ENSG00000126217|O15068-4|MCF2L;nc|ENSG00000126217|O15068-3|MCF2L;nc|ENSG00000126217|O15068-2|MCF2L;nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L	nc|ENSG00000126217|O15068-4|MCF2L	nc|ENSG00000126217|O15068-4|MCF2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7763366699219	2	497.776408	993.538263	0.34585	0.00017215	-0.045014	-2.2407E-05	0.30083	0.00014975	497.776280041361	73.159	0.94653	73.159	72.881	73.828	0					63	33	2	0	0	0	0.00094673	2	18721	18675;18721		123.45	75.105	1	801860			50773	3261	28978	28979	62207;62208	62208					0.04123518491860523
TYLTSIPSL	9	Unmodified	_TYLTSIPSL_					0	0	0		nc|ENSG00000126217|O15068-4|MCF2L;nc|ENSG00000126217|O15068-3|MCF2L;nc|ENSG00000126217|O15068-2|MCF2L;nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L	nc|ENSG00000126217|O15068-4|MCF2L	nc|ENSG00000126217|O15068-4|MCF2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7763366699219	2	497.776408	993.538263	0.28369	0.00014121	-0.013659	-6.799E-06	0.27003	0.00013441	497.77627741111024	73.159	1.013	73.213	72.814	73.827	0.053833					66	36	2	0	0	0	0.0033114	2	18647	18647;18697		99.799	59.842	1	737250			50774	3261	28978	28979	62209;62210	62209					0.04123518491860523
TYLTSIPSL	9	Unmodified	_TYLTSIPSL_					0	0	0		nc|ENSG00000126217|O15068-4|MCF2L;nc|ENSG00000126217|O15068-3|MCF2L;nc|ENSG00000126217|O15068-2|MCF2L;nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L	nc|ENSG00000126217|O15068-4|MCF2L	nc|ENSG00000126217|O15068-4|MCF2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7764892578125	2	497.776408	993.538263	0.41557	0.00020686	-0.12036	-5.9912E-05	0.29522	0.00014695	497.77620978452023	73.28	0.81973	73.251	72.873	73.693	-0.029297					56	29	2	0	0	0	0.0018995	2	18667	18667;18719		111.29	71.33	1	769590			50775	3261	28978	28979	62211;62212	62211					0.04123518491860523
TYLVAFVIC	9	Carbamidomethyl (C)	_TYLVAFVIC(Carbamidomethyl (C))_	TYLVAFVIC(1)		TYLVAFVIC(54)		0	1	0		ENSG00000172901|ENST00000357872|LVRN;LVRN|p.N429Mfs*16|1|0.1|ENSG00000172901|chr5:115993766-115993767|AT/-|frameshift_variant;nc|ENSG00000172901|Q6Q4G3-2|LVRN	ENSG00000172901|ENST00000357872|LVRN	ENSG00000172901|ENST00000357872|LVRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2883911132812	2	543.288628	1084.5627	0.54164	0.00029427	-0.58325	-0.00031687	-0.041609	-2.2606E-05	543.2881729401403	49.642	1.0227	49.642	49.218	50.241	0					89	37	4	0	0	0	0.048175	1	11431	11431		53.576	15.424	1	1339200			50776	6672	28979	28980	62213	62213	6				0.023804553737363676
TYLVAFVIC	9	Carbamidomethyl (C)	_TYLVAFVIC(Carbamidomethyl (C))_	TYLVAFVIC(1)		TYLVAFVIC(47)		0	1	0		ENSG00000172901|ENST00000357872|LVRN;LVRN|p.N429Mfs*16|1|0.1|ENSG00000172901|chr5:115993766-115993767|AT/-|frameshift_variant;nc|ENSG00000172901|Q6Q4G3-2|LVRN	ENSG00000172901|ENST00000357872|LVRN	ENSG00000172901|ENST00000357872|LVRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.288330078125	2	543.288628	1084.5627	0.56851	0.00030887	-0.54831	-0.00029789	0.020205	1.0977E-05	543.28811579622	49.58	1.188	49.625	49.184	50.372	0.044891					93	44	4	0	0	0	0.06608	1	11422	11422		46.921	8.7697	1	1562300			50777	6672	28979	28980	62214	62214	6				0.023804553737363676
TYLVAFVIC	9	Carbamidomethyl (C)	_TYLVAFVIC(Carbamidomethyl (C))_	TYLVAFVIC(1)		TYLVAFVIC(64)		0	1	0		ENSG00000172901|ENST00000357872|LVRN;LVRN|p.N429Mfs*16|1|0.1|ENSG00000172901|chr5:115993766-115993767|AT/-|frameshift_variant;nc|ENSG00000172901|Q6Q4G3-2|LVRN	ENSG00000172901|ENST00000357872|LVRN	ENSG00000172901|ENST00000357872|LVRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2886962890625	2	543.288628	1084.5627	0.55125	0.00029949	-0.36588	-0.00019878	0.18537	0.00010071	543.2882934239954	49.605	1.051	49.628	49.286	50.337	0.02293					78	38	3	0	0	0	0.021303	1	11412	11412		63.563	25.412	1	1551600			50778	6672	28979	28980	62215	62215	6				0.023804553737363676
TYLVDMQRF	9	Oxidation (M)	_TYLVDM(Oxidation (M))QRF_		TYLVDM(1)QRF		TYLVDM(73)QRF	0	0	1		ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7899780273438	2	594.789524	1187.56449	0.52778	0.00031392	0.2824	0.00016797	0.81018	0.00048189	594.7894863633404	47.392	0.45825	47.445	47.192	47.651	0.052574					30	16	2	0	0	0	0.014206	1	10781	10781		72.968	53.711	1	502260			50779	7181	28980	28981	62216	62216		801			-0.021785356083455554
TYLVDMQRF	9	Oxidation (M)	_TYLVDM(Oxidation (M))QRF_					0	0	1		ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	594.789524	1187.56449	0.71668	0.00042627	0.010501	6.2462E-06	0.72718	0.00043252	594.7895595480546	47.431	0.46888	47.431	47.214	47.682	0	0.0015177	-5.743E-05	NaN	72.968	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455260			50780	7181	28980	28981				801			-0.021785356083455554
TYLVDMQRF	9	Oxidation (M)	_TYLVDM(Oxidation (M))QRF_					0	0	1		ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	ENSG00000180340|ENST00000315323|FZD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	594.789524	1187.56449	0.93427	0.00055569	-0.34068	-0.00020263	0.59359	0.00035306	594.7892221562705	47.358	0.56104	47.412	47.196	47.757	0.054375	-0.017013	-0.00047519	NaN	72.968	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	588620			50781	7181	28980	28981				801			-0.021785356083455554
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2792358398438	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.33	1	112.33	111.83	112.83	0								0	0	0	0.2575	1	29201	29201		3.9444	0.3479	1		+		50782	13298	28981	28982	62217	62217					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2804565429688	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.47	1	115.47	114.97	115.97	0								0	0	0	0.2362	1	29925	29925		10.824	1.4408	1		+		50783	13298	28981	28982	62218	62218					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2792358398438	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.3	1	117.3	116.8	117.8	0								0	0	0	0.2489	1	30338	30338		6.7232	2.3939	1		+		50784	13298	28981	28982	62219	62219					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2791137695312	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.17	1	118.17	117.67	118.67	0								0	0	0	0.2575	1	30535	30535		3.9444	0.3479	1		+		50785	13298	28981	28982	62220	62220					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2781982421875	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.74	1	118.74	118.24	119.24	0								0	0	0	0.2575	1	30662	30662		3.9444	0.3479	1		+		50786	13298	28981	28982	62221	62221					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2799682617188	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.51	1	112.49	111.99	112.99	-0.015625								0	0	0	0.2575	1	29266	29266		3.9444	0.3479	1		+		50787	13298	28981	28982	62222	62222					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2774658203125	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.86	1	113.84	113.34	114.34	-0.017616								0	0	0	0.2575	1	29584	29584		3.9444	0.3479	1		+		50788	13298	28981	28982	62223	62223					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.27978515625	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.14	1	114.12	113.62	114.62	-0.019096								0	0	0	0.2575	1	29650	29650		3.9444	0.3479	1		+		50789	13298	28981	28982	62224	62224					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.278564453125	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.48	1	116.45	115.95	116.95	-0.022781								0	0	0	0.2575	1	30174	30174		3.9444	0.3479	1		+		50790	13298	28981	28982	62225	62225					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2796630859375	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.72	1	116.7	116.2	117.2	-0.022781								0	0	0	0.2575	1	30229	30229		3.9444	0.3479	1		+		50791	13298	28981	28982	62226	62226					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2794799804688	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.08	1	117.06	116.56	117.56	-0.022781								0	0	0	0.25631	1	30314	30314		4.3292	0.38484	1		+		50792	13298	28981	28982	62227	62227					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2792358398438	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.01	1	118.98	118.48	119.48	-0.024147								0	0	0	0.2575	1	30737	30737		3.9444	0.3479	1		+		50793	13298	28981	28982	62228	62228					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2789306640625	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.15	1	119.13	118.63	119.63	-0.024147								0	0	0	0.2575	1	30769	30769		3.9444	0.3479	1		+		50794	13298	28981	28982	62229	62229					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.278564453125	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.42	1	119.4	118.9	119.9	-0.024361								0	0	0	0.2575	1	30830	30830		3.9444	0.3479	1		+		50795	13298	28981	28982	62230	62230					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2800903320312	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.98	1	111.99	111.49	112.49	0.0131								0	0	0	0.2362	1	29152	29152		10.824	1.4408	1		+		50796	13298	28981	28982	62231	62231					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2794189453125	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116	1	116.02	115.52	116.52	0.018738								0	0	0	0.2575	1	30111	30111		3.9444	0.3479	1		+		50797	13298	28981	28982	62232	62232					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2802734375	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.53	1	116.55	116.05	117.05	0.020988								0	0	0	0.2575	1	30235	30235		3.9444	0.3479	1		+		50798	13298	28981	28982	62233	62233					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2783813476562	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.84	1	116.86	116.36	117.36	0.020988								0	0	0	0.2362	1	30305	30305		10.824	1.4408	1		+		50799	13298	28981	28982	62234	62234					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2791748046875	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.89	1	118.92	118.42	119.42	0.026253								0	0	0	0.2575	1	30772	30772		3.9444	1.6417	1		+		50800	13298	28981	28982	62235	62235					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2782592773438	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.29	1	119.32	118.82	119.82	0.027756								0	0	0	0.2489	1	30860	30860		6.7232	2.7788	1		+		50801	13298	28981	28982	62236	62236					-0.049893331108251004
TYLYQSVME	9	Unmodified	_TYLYQSVME_					0	0	0			REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	REV__DIAPH1|p.A1052Lfs*8|1|0.21|ENSG00000131504|chr5:141527693-141527693|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2808837890625	2	567.262807	1132.51106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.82	1	119.85	119.35	120.35	0.027756								0	0	0	0.2575	1	30977	30977		3.9444	0.3479	1		+		50802	13298	28981	28982	62237	62237					-0.049893331108251004
TYLYRVQRL	9	Unmodified	_TYLYRVQRL_					0	0	0		ENSG00000125823|ENST00000347397|CSTL1	ENSG00000125823|ENST00000347397|CSTL1	ENSG00000125823|ENST00000347397|CSTL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3702392578125	2	606.348397	1210.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.27	1	117.27	116.77	117.77	0								0	0	0	0.2672	1	30333	30333		0.52476	0	1				50803	3234	28982	28983	62238	62238					0.08532785042666546
TYMDRVFKQF	10	Oxidation (M)	_TYM(Oxidation (M))DRVFKQF_		TYM(1)DRVFKQF		TYM(82)DRVFKQF	0	0	1		ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.88861083984375	3	450.888546	1349.64381	0.13821	6.2316E-05	-0.15116	-6.8158E-05	-0.012956	-5.8417E-06	450.8885196451843	43.848	0.62098	43.848	43.494	44.115	0					66	22	4	0	0	0	0.010169	2	9687	9637;9687		82.445	70.218	1	1006800			50804	5347	28983	28984	62239;62240	62240		645			-0.017028886541766042
TYMDRVFKQF	10	Oxidation (M)	_TYM(Oxidation (M))DRVFKQF_		TYM(1)DRVFKQF		TYM(68)DRVFKQF	0	0	1		ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.8883972167969	3	450.888546	1349.64381	0.060354	2.7213E-05	-0.21345	-9.6244E-05	-0.1531	-6.9031E-05	450.88841935465655	42.752	0.5167	42.837	42.618	43.135	0.085197					34	18	2	0	0	0	0.023019	1	9321	9321		68.436	54.265	1	880790			50805	5347	28983	28984	62241	62241		645			-0.017028886541766042
TYMDRVFKQF	10	Oxidation (M)	_TYM(Oxidation (M))DRVFKQF_		TYM(1)DRVFKQF		TYM(78)DRVFKQF	0	0	1		ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.8885498046875	3	450.888546	1349.64381	0.31635	0.00014264	-0.11679	-5.266E-05	0.19956	8.9978E-05	450.88838779961145	43.39	0.82008	43.468	43.1	43.92	0.077515					66	29	3	0	0	0	0.01414	2	9511	9511;9555		78.116	61.067	1	984100			50806	5347	28983	28984	62242;62243	62242		645			-0.017028886541766042
TYMDRVFKQF	10	Oxidation (M)	_TYM(Oxidation (M))DRVFKQF_		TYM(1)DRVFKQF		TYM(72)DRVFKQF	0	0	1		ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.888427734375	3	450.888546	1349.64381	0.01762	7.9444E-06	-0.12695	-5.7242E-05	-0.10933	-4.9297E-05	450.8884103636309	42.663	0.67039	42.754	42.527	43.198	0.091362					44	24	2	0	0	0	0.019496	1	9303	9303		72.276	59.42	1	931890			50807	5347	28983	28984	62244	62244		645			-0.017028886541766042
TYMDRVFKQF	10	Oxidation (M)	_TYM(Oxidation (M))DRVFKQF_		TYM(1)DRVFKQF		TYM(80)DRVFKQF	0	0	1		ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	ENSG00000158201|ENST00000289119|ABHD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.22320556640625	3	450.888546	1349.64381	0.26737	0.00012055	-0.075976	-3.4256E-05	0.19139	8.6297E-05	451.22292024653495	43.377	0.80399	43.461	43.14	43.944	0.083996					70	29	4	0	0	0	0.012192	2	9497	9497;9548		80.24	63.191	1	1222600			50808	5347	28983	28984	62245;62246	62245		645			-0.017028886541766042
TYMEEERNF	9	Unmodified	_TYMEEERNF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.24346923828125	3	406.841372	1217.50229	-0.088568	-3.6033E-05	0.15411	6.2698E-05	0.065541	2.6665E-05	406.8414134248485	44.227	0.37194	44.227	43.985	44.357	0					26	13	3	0	0	0	0.259	1	9773	9773		2.7352	0	1	296450			50809	6468	28984	28985	62247	62247					-0.09776306747312447
TYMEEERNF	9	Unmodified	_TYMEEERNF_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.2434387207031	3	406.841372	1217.50229	-0.040083	-1.6307E-05	0.28396	0.00011553	0.24388	9.922E-05	406.84146831502136	43.813	0.50121	43.891	43.654	44.155	0.077518					32	18	3	0	0	0	0.259	1	9696	9696		2.7352	0.82882	1	294800			50810	6468	28984	28985	62248	62248					-0.09776306747312447
TYMETYVYF	9	Oxidation (M)	_TYM(Oxidation (M))ETYVYF_		TYM(1)ETYVYF		TYM(120)ETYVYF	0	0	1		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.7626342773438	2	616.76264	1231.51073	0.2344	0.00014457	-0.11773	-7.2614E-05	0.11666	7.1953E-05	616.7625879069399	68.422	1.8217	68.422	68.074	69.895	0					169	66	4	0	0	0	0.0011817	7	17229	17182;17229;17272;17325;17377;17427;17494		120.45	98.913	1	6747000			50811	469	28985	28986	62249;62250;62251;62252;62253;62254;62255	62250		51			-0.09576752830685109
TYMETYVYF	9	Oxidation (M)	_TYM(Oxidation (M))ETYVYF_		TYM(1)ETYVYF		TYM(120)ETYVYF	0	0	1		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.7626953125	2	616.76264	1231.51073	0.09641	5.9462E-05	-0.070863	-4.3706E-05	0.025547	1.5756E-05	616.7626147120566	68.321	1.4765	68.393	68.016	69.493	0.071938					176	53	5	0	0	0	0.0011817	5	17200	17150;17200;17250;17295;17344		120.45	100.37	1	6559600			50812	469	28985	28986	62256;62257;62258;62259;62260	62257		51			-0.09576752830685109
TYMETYVYF	9	Oxidation (M)	_TYM(Oxidation (M))ETYVYF_		TYM(1)ETYVYF		TYM(120)ETYVYF	0	0	1		ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.7626953125	2	616.76264	1231.51073	0.27706	0.00017088	-0.225	-0.00013877	0.052055	3.2105E-05	616.7625134935406	68.422	1.636	68.403	68.04	69.676	-0.01915					171	58	4	0	0	0	0.0011817	6	17267	17176;17219;17267;17316;17366;17419		120.45	98.913	1	6297600			50813	469	28985	28986	62261;62262;62263;62264;62265;62266	62263		51			-0.09576752830685109
TYMKDLYQL	9	Oxidation (M)	_TYM(Oxidation (M))KDLYQL_		TYM(1)KDLYQL		TYM(180)KDLYQL	0	0	1		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.7916259765625	2	595.791732	1189.56891	0.38174	0.00022744	-0.7514	-0.00044768	-0.36966	-0.00022024	595.7916178777956	46.591	1.7381	46.591	46.111	47.849	0					220	62	6	0	0	0	5.7869E-11	10	10458	10413;10458;10501;10541;10584;10634;10642;10685;10746;10800		184.36	105.63	1	16474000			50814	4707	28986	28987	62267;62268;62269;62270;62271;62272;62273;62274;62275;62276	62268		590			-0.018290711854206165
TYMKDLYQL	9	Oxidation (M)	_TYM(Oxidation (M))KDLYQL_		TYM(1)KDLYQL		TYM(170)KDLYQL	0	0	1		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.7916259765625	2	595.791732	1189.56891	0.45644	0.00027194	-0.77322	-0.00046068	-0.31679	-0.00018874	595.7915067224785	46.307	1.9474	46.367	45.9	47.848	0.059834					222	71	5	0	0	0	2.2231E-07	10	10427	10331;10377;10427;10468;10517;10560;10605;10653;10701;10753		171.46	102.36	1	18209000			50815	4707	28986	28987	62277;62278;62279;62280;62281;62282;62283;62284;62285;62286	62279		590			-0.018290711854206165
TYMKDLYQL	9	Oxidation (M)	_TYM(Oxidation (M))KDLYQL_		TYM(1)KDLYQL		TYM(170)KDLYQL	0	0	1		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.7915649414062	2	595.791732	1189.56891	0.34093	0.00020312	-0.75294	-0.0004486	-0.41202	-0.00024548	595.7915569716293	46.374	1.9717	46.428	45.889	47.861	0.054375					246	71	6	0	0	0	2.2231E-07	9	10374	10327;10374;10426;10476;10525;10568;10611;10660;10708		171.46	92.736	1	17196000			50816	4707	28986	28987	62287;62288;62289;62290;62291;62292;62293;62294;62295	62288		590			-0.018290711854206165
TYMKEILRF	9	Oxidation (M)	_TYM(Oxidation (M))KEILRF_		TYM(1)KEILRF		TYM(63)KEILRF	0	0	1		ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.2178649902344	3	406.218003	1215.63218	-0.097728	-3.9699E-05	-0.15716	-6.3839E-05	-0.25488	-0.00010354	406.21793845253626	43.349	0.81017	43.349	42.871	43.681	0					81	29	3	0	0	0	0.023171	2	9536	9486;9536		62.869	31.925	1	1553200			50817	2911	28987	28988	62296;62297	62297		364			0.03298914322476776
TYMKEILRF	9	Oxidation (M)	_TYM(Oxidation (M))KEILRF_		TYM(1)KEILRF		TYM(79)KEILRF	0	0	1		ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.21795654296875	3	406.218003	1215.63218	-0.028478	-1.1568E-05	-0.25246	-0.00010255	-0.28093	-0.00011412	406.217936322149	43	0.8437	43.085	42.565	43.408	0.085197					84	30	4	0	0	0	0.01053	3	9400	9348;9400;9447		78.61	35.775	1	1488300			50818	2911	28987	28988	62298;62299;62300	62299		364			0.03298914322476776
TYMKEILRF	9	Oxidation (M)	_TYM(Oxidation (M))KEILRF_		TYM(1)KEILRF		TYM(83)KEILRF	0	0	1		ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.2178649902344	3	406.218003	1215.63218	-0.21977	-8.9273E-05	-0.051595	-2.0959E-05	-0.27136	-0.00011023	406.2179771748677	42.95	0.78349	43.041	42.607	43.391	0.091362					88	28	4	0	0	0	0.0074885	3	9391	9341;9391;9439		83.278	34.101	1	1293500			50819	2911	28987	28988	62301;62302;62303	62302		364			0.03298914322476776
TYMKEILRF	9	Oxidation (M)	_TYM(Oxidation (M))KEILRF_		TYM(1)KEILRF		TYM(59)KEILRF	0	0	1		ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8238525390625	2	608.823366	1215.63218	0.11051	6.7279E-05	0.096525	5.8767E-05	0.20703	0.00012605	608.823410585527	42.931	0.72643	43.022	42.607	43.334	0.091362					61	26	3	0	0	0	0.033439	1	9369	9369		59.052	31.829	1	537770			50820	2911	28987	28988	62304	62304		364			0.03298914322476776
TYMKEILRF	9	Oxidation (M)	_TYM(Oxidation (M))KEILRF_					0	0	1		ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	608.823366	1215.63218	0.37123	0.00022602	-0.11693	-7.119E-05	0.2543	0.00015483	608.8233598529175	43.336	0.72819	43.336	42.902	43.63	0	0.17125	-7.0533E-05	NaN	59.052	66	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484140			50821	2911	28987	28988				364			0.03298914322476776
TYMKEILRF	9	Oxidation (M)	_TYM(Oxidation (M))KEILRF_					0	0	1		ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	ENSG00000119899|ENST00000355773|SLC17A5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	608.823366	1215.63218	0.43489	0.00026477	-0.14052	-8.5549E-05	0.29437	0.00017922	608.8232922142274	43.051	0.67841	43.136	42.676	43.355	0.085197	-0.028426	-9.9251E-05	NaN	59.052	45	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	613470			50822	2911	28987	28988				364			0.03298914322476776
TYNDMATLFF	10	Oxidation (M)	_TYNDM(Oxidation (M))ATLFF_		TYNDM(1)ATLFF		TYNDM(40)ATLFF	0	0	1		nc|ENSG00000011021|P51797-6|CLCN6;ENSG00000011021|ENST00000346436|CLCN6;nc|ENSG00000011021|P51797-5|CLCN6	nc|ENSG00000011021|P51797-6|CLCN6	nc|ENSG00000011021|P51797-6|CLCN6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.773681640625	2	619.773539	1237.53253	0.38247	0.00023704	-0.34961	-0.00021668	0.032854	2.0362E-05	619.7736287592743	76.711	0.67264	76.679	76.318	76.991	-0.031479					33	24	2	0	0	0	0.13784	1	19758	19758		40.239	12.066	1	276370			50823	431	28988	28989	62305	62305		45			-0.07673948082151583
TYNESFYV	8	Unmodified	_TYNESFYV_					0	0	0			REV__ENSG00000179387|ENST00000323570|ELMOD2	REV__ENSG00000179387|ENST00000323570|ELMOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.3115234375	2	511.726915	1021.43928	0.32429	0.00016595	-0.49549	-0.00025356	-0.17121	-8.7611E-05	511.7266259722686	38.046	0.46995	38.137	37.877	38.347	0.090881					24	16	2	0	0	0	0.34092	1	7850	7850		13.508	0	1	97205	+		50824	18072	28989	28990	62306	62306					-0.07058504473036464
TYNESFYV	8	Unmodified	_TYNESFYV_					0	0	0			REV__ENSG00000179387|ENST00000323570|ELMOD2	REV__ENSG00000179387|ENST00000323570|ELMOD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	511.726915	1021.43928	0.29188	0.00014936	-0.93557	-0.00047875	-0.64369	-0.00032939	511.72652400334806	38.136	0.36377	38.136	37.956	38.32	0	-0.00060961	-0.00022035	NaN	13.508	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140880	+		50825	18072	28989	28990							-0.07058504473036464
TYNFRSPF	8	Unmodified	_TYNFRSPF_					0	0	0			REV__ENST00000311117.7_1_7:104746436-104747131:+|nuORF	REV__ENST00000311117.7_1_7:104746436-104747131:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.8185424804688	2	516.250892	1030.48723	0.20467	0.00010566	-0.1297	-6.6956E-05	0.074972	3.8704E-05	516.2508915769256	42.404	1.0909	42.489	42.18	43.271	0.085201					102	39	3	0	0	0	0.34218	1	9383	9383		9.3474	1.7385	1	1580200	+		50826	19897	28990	28991	62307	62307					-0.026793857623488293
TYNIFAITF	9	Unmodified	_TYNIFAITF_					0	0	0		ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	ENSG00000024048|ENST00000372901|UBR2	ENSG00000024048|ENST00000372901|UBR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3209838867188	2	545.2844	1088.55425	0.33108	0.00018053	-0.15225	-8.3022E-05	0.17883	9.7511E-05	545.2842815326915	93.944	0.39876	93.944	93.725	94.123	0					45	27	2	0	0	0	0.17263	1	25033	25033		38.615	22.768	1	97229			50827	529	28991	28992	62308	62308					0.013512247287280843
TYNIFAITF	9	Unmodified	_TYNIFAITF_					0	0	0		ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	ENSG00000024048|ENST00000372901|UBR2	ENSG00000024048|ENST00000372901|UBR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3209228515625	2	545.2844	1088.55425	0.54187	0.00029547	0.012151	6.626E-06	0.55402	0.0003021	545.2844675393918	93.766	0.51308	93.853	93.662	94.175	0.08667					65	39	2	0	0	0	0.19686	1	24987	24987		31.268	16.43	1	157960			50828	529	28991	28992	62309	62309					0.013512247287280843
TYNIFAITF	9	Unmodified	_TYNIFAITF_					0	0	0		ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	ENSG00000024048|ENST00000372901|UBR2	ENSG00000024048|ENST00000372901|UBR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3211059570312	2	545.2844	1088.55425	0.71569	0.00039025	-0.46475	-0.00025342	0.25094	0.00013683	545.2841033869745	93.834	0.56097	93.834	93.676	94.237	-0.00051117					66	37	2	0	0	0	0.18479	1	25037	25037		34.932	8.0484	1	152400			50829	529	28991	28992	62310	62310					0.013512247287280843
TYNIHLHALF	10	Unmodified	_TYNIHLHALF_					0	0	0		ENST00000460547.6_1_6:43480300-43480648:-|nuORF;ENSG00000137207|ENST00000372422|YIPF3	ENST00000460547.6_1_6:43480300-43480648:-|nuORF	ENST00000460547.6_1_6:43480300-43480648:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.60797119140625	3	410.220624	1227.64004	0.030676	1.2584E-05	-0.33282	-0.00013653	-0.30214	-0.00012395	410.22041274519603	56.773	0.37842	56.773	56.633	57.012	0					21	13	2	0	0	0	0.31876	1	13691	13691		7.1017	0	1	145750			50830	4034	28992	28993	62311	62311					0.035328096342709614
TYNIHLHALF	10	Unmodified	_TYNIHLHALF_					0	0	0		ENST00000460547.6_1_6:43480300-43480648:-|nuORF;ENSG00000137207|ENST00000372422|YIPF3	ENST00000460547.6_1_6:43480300-43480648:-|nuORF	ENST00000460547.6_1_6:43480300-43480648:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	410.220624	1227.64004	0.30056	0.0001233	-1.0905	-0.00044733	-0.7899	-0.00032403	410.22013174060265	56.714	0.33944	56.792	56.543	56.883	0.078674	-0.040095	-0.0004551	NaN	7.1017	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162650			50831	4034	28992	28993							0.035328096342709614
TYNIHLHALF	10	Unmodified	_TYNIHLHALF_					0	0	0		ENST00000460547.6_1_6:43480300-43480648:-|nuORF;ENSG00000137207|ENST00000372422|YIPF3	ENST00000460547.6_1_6:43480300-43480648:-|nuORF	ENST00000460547.6_1_6:43480300-43480648:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	410.220624	1227.64004	0.30913	0.00012681	-0.74592	-0.00030599	-0.43679	-0.00017918	410.22046069288564	56.952	0.47732	56.932	56.78	57.257	-0.019081	0.099892	-3.1099E-05	NaN	7.1017	23	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197920			50832	4034	28992	28993							0.035328096342709614
TYNITPTQV	9	Unmodified	_TYNITPTQV_					0	0	0			REV__ENSG00000103066|ENST00000219345|PLA2G15	REV__ENSG00000103066|ENST00000219345|PLA2G15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2953491210938	2	518.769114	1035.52368	0.39547	0.00020516	0.51845	0.00026896	0.91392	0.00047412	518.7694490272996	62.999	0.42008	62.999	62.747	63.168	0					24	15	2	0	0	0	0.22674	1	15593	15593		22.736	0.078198	1	504340	+		50833	14353	28993	28994	62312	62312					0.007334463437018712
TYNKHINISF	10	Unmodified	_TYNKHINISF_					0	0	0		ENSG00000173451|ENST00000308086|THAP2	ENSG00000173451|ENST00000308086|THAP2	ENSG00000173451|ENST00000308086|THAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.8835754394531	3	412.8839	1235.62987	-0.14099	-5.8212E-05	0.46687	0.00019276	0.32588	0.00013455	412.8838429529325	41.992	0.51919	41.992	41.786	42.306	0					37	19	3	0	0	0	0.31867	1	9116	9116		11.518	1.7536	1	961900			50834	6723	28994	28995	62313	62313					0.02148201909017189
TYNKHINISF	10	Unmodified	_TYNKHINISF_					0	0	0		ENSG00000173451|ENST00000308086|THAP2	ENSG00000173451|ENST00000308086|THAP2	ENSG00000173451|ENST00000308086|THAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.8511352539062	2	618.822212	1235.62987	0.11833	7.3223E-05	0.098763	6.1117E-05	0.21709	0.00013434	618.8222460751831	41.963	0.24087	41.963	41.9	42.141	0					12	7	2	0	0	0	0.25899	1	9120	9120		51.488	33.115	1	411430			50835	6723	28994	28995	62314	62314					0.02148201909017189
TYNKHINISF	10	Unmodified	_TYNKHINISF_					0	0	0		ENSG00000173451|ENST00000308086|THAP2	ENSG00000173451|ENST00000308086|THAP2	ENSG00000173451|ENST00000308086|THAP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	412.8839	1235.62987	-0.14099	-5.8212E-05	0.46687	0.00019276	0.32588	0.00013455	412.8838429529325	41.992	0.51919	41.992	41.786	42.306	0	-0.057275	-5.9966E-05	NaN	11.518	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	961900			50836	6723	28994	28995							0.02148201909017189
TYNKHINISF	10	Unmodified	_TYNKHINISF_					0	0	0		ENSG00000173451|ENST00000308086|THAP2	ENSG00000173451|ENST00000308086|THAP2	ENSG00000173451|ENST00000308086|THAP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	412.8839	1235.62987	0.41149	0.0001699	2.8252	0.0011665	3.2367	0.0013364	413.21843460876437	42.021	0.17086	42.106	42.009	42.18	0.085197	0.057275	0.0028612	NaN	11.518	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170970			50837	6723	28994	28995							0.02148201909017189
TYNKVLHFF	9	Unmodified	_TYNKVLHFF_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.8111572265625	2	584.811116	1167.60768	0.3606	0.00021088	0.44404	0.00025968	0.80464	0.00047056	584.8113036672289	52.413	0.83706	52.413	52.123	52.96	0					77	29	3	0	0	0	9.2305E-05	5	12302	12302;12353;12369;12419;12471		142.08	70.346	1	1310000			50838	4929	28995	28996	62315;62316;62317;62318;62319	62315					0.030580222312892147
TYNKVLHFF	9	Unmodified	_TYNKVLHFF_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.830810546875	2	584.811116	1167.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.122	1	53.122	52.622	53.622	0								0	0	0	0.17427	1	12522	12522		29.082	10.708	1				50839	4929	28995	28996	62320	62320					0.030580222312892147
TYNKVLHFF	9	Unmodified	_TYNKVLHFF_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.8111572265625	2	584.811116	1167.60768	0.32321	0.00018901	0.52502	0.00030704	0.84822	0.00049605	584.8113670698233	52.304	0.89757	52.355	52.009	52.907	0.050575					81	32	3	0	0	0	0.00045155	3	12295	12295;12344;12395		129.77	91.158	1	1665300			50840	4929	28995	28996	62321;62322;62323	62321					0.030580222312892147
TYNKVLHFF	9	Unmodified	_TYNKVLHFF_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8114013671875	2	584.811116	1167.60768	0.26142	0.00015288	0.63298	0.00037018	0.89441	0.00052306	584.811377688423	52.597	0.90095	52.596	52.274	53.175	-0.00080872					81	32	3	0	0	0	0.00045155	4	12374	12374;12396;12440;12485		129.77	87.817	1	1461200			50841	4929	28995	28996	62324;62325;62326;62327	62324					0.030580222312892147
TYNKVLHFF	9	Unmodified	_TYNKVLHFF_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8309326171875	2	584.811116	1167.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.365	1	53.356	52.856	53.856	-0.0096054								0	0	0	0.15136	1	12589	12589		34.402	19.153	1				50842	4929	28995	28996	62328	62328					0.030580222312892147
TYNMVLNLL	9	Oxidation (M)	_TYNM(Oxidation (M))VLNLL_		TYNM(1)VLNLL		TYNM(150)VLNLL	0	0	1		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7890014648438	2	548.788992	1095.56343	0.58004	0.00031832	-0.5369	-0.00029465	0.043135	2.3672E-05	548.7888012573175	77.154	1.0746	77.154	76.617	77.691	0					109	39	6	0	0	0	2.8439E-05	1	19908	19908		152.41	70.522	1	4284300			50843	594	28996	28997	62329	62329		71			0.019472500227720957
TYNMVLNLL	9	Oxidation (M)	_TYNM(Oxidation (M))VLNLL_		TYNM(1)VLNLL		TYNM(150)VLNLL	0	0	1		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7894287109375	2	548.788992	1095.56343	0.74732	0.00041012	-0.3686	-0.00020228	0.37872	0.00020784	548.788776034427	77.562	2.0577	77.562	77.308	79.366	0					186	79	4	0	0	0	2.8439E-05	4	20004	19955;20004;20043;20089		152.41	59.921	1	3877800			50844	594	28996	28997	62330;62331;62332;62333	62331		71			0.019472500227720957
TYNMVLNLL	9	Oxidation (M)	_TYNM(Oxidation (M))VLNLL_		TYNM(1)VLNLL		TYNM(130)VLNLL	0	0	1		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7891235351562	2	548.788992	1095.56343	0.56601	0.00031062	-0.40414	-0.00022179	0.16187	8.8833E-05	548.7888209554812	77.051	0.55553	77.106	76.758	77.314	0.055412					88	19	6	0	0	0	0.00014042	1	19881	19881		134.3	52.405	1	4339800			50845	594	28996	28997	62334	62334		71			0.019472500227720957
TYNMVLNLL	9	Oxidation (M)	_TYNM(Oxidation (M))VLNLL_		TYNM(1)VLNLL		TYNM(170)VLNLL	0	0	1		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7893676757812	2	548.788992	1095.56343	0.81622	0.00044793	-0.48818	-0.00026791	0.32805	0.00018003	548.7887180770321	77.44	2.1138	77.496	77.233	79.347	0.055412					180	82	4	0	0	0	3.5085E-07	4	19974	19930;19974;20016;20060		166.45	73.956	1	4493800			50846	594	28996	28997	62335;62336;62337;62338	62336		71			0.019472500227720957
TYNMVLNLL	9	Oxidation (M)	_TYNM(Oxidation (M))VLNLL_		TYNM(1)VLNLL		TYNM(170)VLNLL	0	0	1		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7890014648438	2	548.788992	1095.56343	0.79213	0.00043471	-0.62124	-0.00034093	0.17089	9.3782E-05	548.788677786612	77.138	1.0348	77.107	76.777	77.812	-0.031334					106	37	5	0	0	0	3.5085E-07	2	19905	19854;19905		166.45	73.956	1	4265200			50847	594	28996	28997	62339;62340	62340		71			0.019472500227720957
TYNMVLNLL	9	Oxidation (M)	_TYNM(Oxidation (M))VLNLL_		TYNM(1)VLNLL		TYNM(180)VLNLL	0	0	1		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7891235351562	2	548.788992	1095.56343	0.92587	0.0005081	-0.59752	-0.00032791	0.32835	0.00018019	548.7886335654885	77.586	2.0299	77.555	77.316	79.346	-0.031334					159	78	4	0	0	0	6.7091E-11	3	19952	19952;20002;20045		181.33	88.836	1	3997000			50848	594	28996	28997	62341;62342;62343	62341		71			0.019472500227720957
TYNNTEPAVF	10	Unmodified	_TYNNTEPAVF_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.2711791992188	2	578.269478	1154.5244	0.31966	0.00018485	2.2425	0.0012968	2.5622	0.0014816	578.27077725846	61.021	0.72338	61.021	60.738	61.461	0					45	26	2	0	0	0	0.24105	1	15002	15002		27.629	0	1	1661300	+		50849	17609	28997	28998	62344	62344					-0.046677590072249586
TYNNTEPAVF	10	Unmodified	_TYNNTEPAVF_					0	0	0			REV__ENSG00000170927|ENST00000371117|PKHD1	REV__ENSG00000170927|ENST00000371117|PKHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2716064453125	2	578.269478	1154.5244	0.30909	0.00017874	1.8697	0.0010812	2.1788	0.0012599	578.2705910558211	60.907	1.0894	61.004	60.752	61.841	0.096989					65	39	2	0	0	0	0.12843	2	14960	14960;15015		41.84	2.2295	1	2155300	+		50850	17609	28997	28998	62345;62346	62345					-0.046677590072249586
TYNPAFSRL	9	Unmodified	_TYNPAFSRL_					0	0	0		ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7775268554688	2	534.777274	1067.53999	0.155	8.2889E-05	-0.15951	-8.5302E-05	-0.0045117	-2.4128E-06	534.7774232842573	45.843	0.61661	45.903	45.619	46.236	0.059837					41	21	3	0	0	0	0.033439	1	10267	10267		59.052	32.169	1	908110			50851	4713	28998	28999	62347	62347					0.008925723004722386
TYNPAFSRL	9	Unmodified	_TYNPAFSRL_					0	0	0		ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.77783203125	2	534.777274	1067.53999	0.6414	0.000343	-0.15741	-8.418E-05	0.48399	0.00025883	534.7770775818572	45.835	0.63221	45.9	45.647	46.279	0.065048					47	22	3	0	0	0	0.018302	1	10278	10278		66.683	42.662	1	922390			50852	4713	28998	28999	62348	62348					0.008925723004722386
TYNPAFSRL	9	Unmodified	_TYNPAFSRL_					0	0	0		ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	ENSG00000146433|ENST00000684151|TMEM181	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	534.777274	1067.53999	0.47812	0.00025569	0.0030311	1.621E-06	0.48115	0.00025731	534.7771674889989	46.12	0.51788	46.12	45.832	46.35	0	0.14577	0.00011655	NaN	66.683	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	853140			50853	4713	28998	28999							0.008925723004722386
TYNQISESF	9	Unmodified	_TYNQISESF_					0	0	0			REV__ENSG00000197299|ENST00000355112|BLM	REV__ENSG00000197299|ENST00000355112|BLM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.3473510742188	2	544.748379	1087.4822	0.91502	0.00049846	0.0017459	9.511E-07	0.91677	0.00049941	544.7480372561707	50.652	0.75735	50.652	50.191	50.949	0					75	27	4	0	0	0	0.23784	1	11695	11695		19.257	7.6167	1	1005300	+		50854	18725	28999	29000	62349	62349					-0.05803734415599138
TYNYPVHYF	9	Unmodified	_TYNYPVHYF_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.2780151367188	2	602.277106	1202.53966	0.82281	0.00049556	0.6763	0.00040732	1.4991	0.00090288	602.2774881252897	54.695	1.6951	54.695	54.24	55.935	0					119	61	2	0	0	0	3.2167E-17	1	13008	13008		222.91	182.95	1	17549000			50855	2454	29000	29001	62350	62350					-0.053508474193904476
TYNYPVHYF	9	Unmodified	_TYNYPVHYF_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.278076171875	2	602.277106	1202.53966	0.79671	0.00047984	0.74719	0.00045001	1.5439	0.00092985	602.2775284470143	54.598	1.6785	54.661	54.246	55.925	0.063202					120	62	2	0	0	0	3.2167E-17	1	12976	12976		222.91	182.95	1	16978000			50856	2454	29000	29001	62351	62351					-0.053508474193904476
TYNYPVHYF	9	Unmodified	_TYNYPVHYF_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.30615234375	2	602.277106	1202.53966	0.69251	0.00041708	0.5782	0.00034824	1.2707	0.00076532	602.2774096761565	54.998	1.6458	54.982	54.49	56.136	-0.015923					111	60	2	0	0	0	0.11486	1	13436	13436		48.346	48.346	1	20120000			50857	2454	29000	29001	62352	62352					-0.053508474193904476
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.761962890625	2	517.761289	1033.50803	1.0144	0.00052524	1.1123	0.0005759	2.1267	0.0011011	517.7616615397599	55.979	0.7956	55.979	55.628	56.423	0					61	28	3	0	0	0	7.3453E-05	2	13361	13361;13408		145.13	105.18	1	3343900			50858	2082	29001	29002	62353;62354	62353					-0.007388401733351202
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3242797851562	2	517.761289	1033.50803	0.50523	0.00026159	1.8909	0.00097902	2.3961	0.0012406	518.2646089025898	56.607	0.34863	56.607	56.423	56.772	0					15	12	2	0	0	0	0.20381	1	13596	13596		23.79	12.966	1	236160			50859	2082	29001	29002	62355	62355					-0.007388401733351202
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7620239257812	2	517.761289	1033.50803	0.74752	0.00038704	1.2725	0.00065883	2.02	0.0010459	517.7617324619133	55.905	0.91942	55.976	55.675	56.595	0.070885					68	33	3	0	0	0	0.00012108	2	13346	13346;13394		137.42	95.078	1	3649600			50860	2082	29001	29002	62356;62357	62356					-0.007388401733351202
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.76220703125	2	517.761289	1033.50803	0.82533	0.00042732	0.85297	0.00044164	1.6783	0.00086896	517.7614904768753	56.061	0.84785	56.042	55.798	56.646	-0.019077					67	30	3	0	0	0	7.3453E-05	2	13446	13398;13446		145.13	99.109	1	2722500			50861	2082	29001	29002	62358;62359	62359					-0.007388401733351202
TYPCRTHTY	9	Unmodified	_TYPCRTHTY_					0	0	0			REV__ENST00000589503.1_1_19:41938138-41938741:-|nuORF	REV__ENST00000589503.1_1_19:41938138-41938741:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7999267578125	2	571.258391	1140.50223	0.31519	0.00018005	2.6092	0.0014905	2.9244	0.0016706	571.2595020743751	75.716	0.24182	75.768	75.701	75.943	0.052361					13	8	2	0	0	0	0.25622	1	19440	19440		7.2892	1.5288	1	141000	+		50862	22552	29002	29003	62360	62360					-0.06240261956645554
TYPDVNNSI	9	Unmodified	_TYPDVNNSI_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.7431945800781	2	511.743096	1021.47164	0.62019	0.00031738	-0.24469	-0.00012522	0.3755	0.00019216	511.7429360760484	46.935	1.1238	46.935	46.648	47.771	0					83	39	4	0	0	0	0.00010125	2	10581	10581;10633		140.63	82.447	1	2846000			50863	3079	29003	29004	62361;62362	62361					-0.03823717070042676
TYPDVNNSI	9	Unmodified	_TYPDVNNSI_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.7434387207031	2	511.743096	1021.47164	0.34199	0.00017501	0.3644	0.00018648	0.70639	0.00036149	511.7431486321285	46.864	0.9924	46.916	46.578	47.57	0.052574					84	36	3	0	0	0	0.00019464	2	10603	10555;10603		133.05	83.119	1	2812600			50864	3079	29003	29004	62363;62364	62364					-0.03823717070042676
TYPDVNNSI	9	Unmodified	_TYPDVNNSI_					0	0	0		nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	nc|ENSG00000122958|O75436-2|VPS26A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.74334716796875	2	511.743096	1021.47164	0.58997	0.00030191	-0.078486	-4.0164E-05	0.51148	0.00026175	511.7430175543779	46.907	1.0203	46.961	46.602	47.622	0.054371					97	36	4	0	0	0	0.00024732	3	10557	10557;10610;10693		132.38	76.203	1	2338700			50865	3079	29003	29004	62365;62366;62367	62365					-0.03823717070042676
TYPEGAPLSDL	11	Unmodified	_TYPEGAPLSDL_					0	0	0		nc|ENSG00000115525|Q9UNP4-2|ST3GAL5;nc|ENSG00000115525|Q9UNP4-3|ST3GAL5;ENSG00000115525|ENST00000638572|ST3GAL5	nc|ENSG00000115525|Q9UNP4-2|ST3GAL5	nc|ENSG00000115525|Q9UNP4-2|ST3GAL5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.7850341796875	2	581.784961	1161.55537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.847	1	59.847	59.347	60.347	0								0	0	0	0.284	1	14598	14598		22.736	0	1				50866	2655	29004	29005	62368	62368					-0.01894605692996265
TYPEGAPLSDL	11	Unmodified	_TYPEGAPLSDL_					0	0	0		nc|ENSG00000115525|Q9UNP4-2|ST3GAL5;nc|ENSG00000115525|Q9UNP4-3|ST3GAL5;ENSG00000115525|ENST00000638572|ST3GAL5	nc|ENSG00000115525|Q9UNP4-2|ST3GAL5	nc|ENSG00000115525|Q9UNP4-2|ST3GAL5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.785400390625	2	581.784961	1161.55537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.59	1	59.685	59.185	60.185	0.095093								0	0	0	0.24958	1	14514	14514		27.629	4.8925	1				50867	2655	29004	29005	62369	62369					-0.01894605692996265
TYPEGAPLSDL	11	Unmodified	_TYPEGAPLSDL_					0	0	0		nc|ENSG00000115525|Q9UNP4-2|ST3GAL5;nc|ENSG00000115525|Q9UNP4-3|ST3GAL5;ENSG00000115525|ENST00000638572|ST3GAL5	nc|ENSG00000115525|Q9UNP4-2|ST3GAL5	nc|ENSG00000115525|Q9UNP4-2|ST3GAL5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.7852172851562	2	581.784961	1161.55537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.732	1	59.72	59.22	60.22	-0.011486								0	0	0	0.24958	1	14555	14555		27.629	4.8925	1				50868	2655	29004	29005	62370	62370					-0.01894605692996265
TYPELKVTF	9	Unmodified	_TYPELKVTF_					0	0	0		ENST00000560515.1_1_15:59693458-59694001:-|nuORF	ENST00000560515.1_1_15:59693458-59694001:-|nuORF	ENST00000560515.1_1_15:59693458-59694001:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3159790039062	2	549.297507	1096.58046	0.64175	0.00035251	0.49928	0.00027426	1.141	0.00062677	549.297940430848	64.147	0.54205	64.239	64.066	64.608	0.09288					31	19	2	0	0	0	0.25989	1	15960	15960		14.838	0.25658	1	86423			50869	11898	29005	29006	62371	62371					0.03603493900232024
TYPELKVTF	9	Unmodified	_TYPELKVTF_					0	0	0		ENST00000560515.1_1_15:59693458-59694001:-|nuORF	ENST00000560515.1_1_15:59693458-59694001:-|nuORF	ENST00000560515.1_1_15:59693458-59694001:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3150634765625	2	549.297507	1096.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.914	1	64.007	63.507	64.507	0.092884								0	0	0	0.19013	1	15850	15850		25.399	0	1				50870	11898	29005	29006	62372	62372					0.03603493900232024
TYPENWRAF	9	Unmodified	_TYPENWRAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.280517578125	2	592.28018	1182.54581	0.34433	0.00020394	0.056916	3.371E-05	0.40124	0.00023765	592.2800788106492	53.613	0.99479	53.67	53.325	54.32	0.056255					87	37	3	0	0	0	0.22935	2	12741	12680;12741		19.362	6.3195	1	650810			50871	8613	29006	29007	62373;62374	62374					-0.03816329187861811
TYPENWRAF	9	Unmodified	_TYPENWRAF_					0	0	0		ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	ENSG00000254772|ENST00000329251|EEF1G	ENSG00000254772|ENST00000329251|EEF1G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.2802124023438	2	592.28018	1182.54581	0.53037	0.00031413	-0.37914	-0.00022456	0.15123	8.9571E-05	592.279856641889	53.99	1.0259	53.974	53.579	54.605	-0.015923					77	36	3	0	0	0	0.21447	1	12804	12804		21.537	6.6987	1	482550			50872	8613	29006	29007	62375	62375					-0.03816329187861811
TYPEVLKEF	9	Unmodified	_TYPEVLKEF_					0	0	0		ENSG00000178074|ENST00000319974|C2orf69	ENSG00000178074|ENST00000319974|C2orf69	ENSG00000178074|ENST00000319974|C2orf69	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.353515625	2	563.294965	1124.57538	0.25926	0.00014604	-0.97355	-0.0005484	-0.71429	-0.00040235	563.2951518668075	59.061	0.84865	59.061	58.531	59.38	0					40	29	2	0	0	0	0.18479	1	14357	14357		28.495	15.963	1	131600			50873	7035	29007	29008	62376	62376					0.018071900376071426
TYPEVLKEF	9	Unmodified	_TYPEVLKEF_					0	0	0		ENSG00000178074|ENST00000319974|C2orf69	ENSG00000178074|ENST00000319974|C2orf69	ENSG00000178074|ENST00000319974|C2orf69	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.353271484375	2	563.294965	1124.57538	0.42322	0.0002384	-1.7484	-0.00098486	-1.3252	-0.00074646	563.7948813212419	58.8	0.57338	58.891	58.474	59.047	0.091301					26	19	2	0	0	0	0.2422	1	14301	14301		19.362	6.3195	1	134760			50874	7035	29007	29008	62377	62377					0.018071900376071426
TYPHKTER	8	Unmodified	_TYPHKTER_					0	0	0			REV__ENST00000506951.5_1_4:20711306-20720453:+|nuORF	REV__ENST00000506951.5_1_4:20711306-20720453:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7688598632812	2	516.267073	1030.51959	0.2331	0.00012034	0.57604	0.00029739	0.80914	0.00041773	516.7691764831296	24.033	0.72396	24.033	23.643	24.367	0					45	24	2	0	0	0	0.34378	1	3656	3656		3.9444	0	1	130890	+		50875	17039	29008	29009	62378	62378					0.005554016406676965
TYPLIFASI	9	Unmodified	_TYPLIFASI_					0	0	0		ENST00000566072.1_1_15:55611475-55617022:+|nuORF;ENSG00000069943|ENST00000164305|PIGB	ENST00000566072.1_1_15:55611475-55617022:+|nuORF	ENST00000566072.1_1_15:55611475-55617022:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2684326171875	2	512.789318	1023.56408	0.39118	0.00020059	-1.684	-0.00086356	-1.2929	-0.00066297	512.790453316534	89.939	0.10719	89.939	89.856	89.963	0					10	7	2	0	0	0	0.25622	1	23816	23816		7.2892	2.0586	1	20006			50876	912	29009	29010	62379	62379					0.05324412734148609
TYPLRPGPQ	9	Unmodified	_TYPLRPGPQ_					0	0	0		ENST00000497039.1_1_2:65298581-65300050:+|nuORF;nc|ENSG00000011523|Q76N32-2|CEP68;ENSG00000011523|ENST00000377990|CEP68	ENST00000497039.1_1_2:65298581-65300050:+|nuORF	ENST00000497039.1_1_2:65298581-65300050:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3084716796875	2	514.779816	1027.54508	0.15405	7.9302E-05	3.4998	0.0018016	3.6538	0.0018809	514.7811607173721	73.813	0.17851	73.865	73.771	73.95	0.052361					7	5	2	0	0	0	0.2322	1	18850	18850		20.454	2.3186	1	133470			50877	446	29010	29011	62380	62380					0.03240876163090434
TYPNECVLCF	10	Unmodified	_TYPNECVLCF_					0	0	0		ENSG00000164266|ENST00000296695|SPINK1	ENSG00000164266|ENST00000296695|SPINK1	ENSG00000164266|ENST00000296695|SPINK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.3164672851562	2	594.756835	1187.49912	0.11945	7.1041E-05	3.2336	0.0019232	3.3531	0.0019943	594.758818167195	61.414	0.32111	61.511	61.408	61.729	0.096985					16	11	2	0	0	0	0.31143	1	15116	15116		17.113	4.0704	1	185670			50878	5819	29011	29012	62381	62381					-0.08713273125681553
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2793579101562	2	567.261122	1132.50769	-0.14582	-8.272E-05	-0.2186	-0.000124	-0.36442	-0.00020672	567.2611064087882	112.93	0.46004	112.93	112.62	113.08	0					78	55	2	0	0	0	0.31417	1	29314	29314		6.7232	0.99131	1	41056			50879	1654	29012	29013	62382	62382					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2789306640625	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.21	1	112.21	111.71	112.71	0								0	0	0	0.2489	1	29175	29175		6.7232	0	1				50880	1654	29012	29013	62383	62383					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2789306640625	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.45	1	112.45	111.95	112.95	0								0	0	0	0.2489	1	29230	29230		6.7232	0	1				50881	1654	29012	29013	62384	62384					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2788696289062	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.42	1	113.42	112.92	113.92	0								0	0	0	0.2489	1	29459	29459		6.7232	0	1				50882	1654	29012	29013	62385	62385					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.279541015625	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.96	1	113.96	113.46	114.46	0								0	0	0	0.2489	1	29583	29583		6.7232	0	1				50883	1654	29012	29013	62386	62386					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2794189453125	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.24	1	114.24	113.74	114.74	0								0	0	0	0.2489	1	29643	29643		6.7232	0	1				50884	1654	29012	29013	62387	62387					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2791748046875	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.67	1	114.67	114.17	115.17	0								0	0	0	0.2489	1	29740	29740		6.7232	0	1				50885	1654	29012	29013	62388	62388					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2796630859375	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.57	1	116.57	116.07	117.07	0								0	0	0	0.2489	1	30172	30172		6.7232	0	1				50886	1654	29012	29013	62389	62389					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2796630859375	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.73	1	116.73	116.23	117.23	0								0	0	0	0.2489	1	30206	30206		6.7232	0	1				50887	1654	29012	29013	62390	62390					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2769775390625	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.96	1	117.96	117.46	118.46	0								0	0	0	0.2489	1	30489	30489		6.7232	0	1				50888	1654	29012	29013	62391	62391					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2783203125	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.03	1	119.03	118.53	119.53	0								0	0	0	0.2489	1	30730	30730		6.7232	0	1				50889	1654	29012	29013	62392	62392					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.279296875	2	567.261122	1132.50769	0.15737	8.9271E-05	-0.45062	-0.00025562	-0.29325	-0.00016635	567.260922648305	114.06	0.20803	114.04	113.9	114.11	-0.019096					39	25	2	0	0	0	0.33276	1	29616	29616		3.9444	0.66309	1	27151			50890	1654	29012	29013	62393	62393					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2792358398438	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.2	1	113.18	112.68	113.68	-0.017303								0	0	0	0.2489	1	29427	29427		6.7232	0	1				50891	1654	29012	29013	62394	62394					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2774047851562	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.61	1	113.6	113.1	114.1	-0.017303								0	0	0	0.2489	1	29529	29529		6.7232	0	1				50892	1654	29012	29013	62395	62395					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2786254882812	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.21	1	115.18	114.68	115.68	-0.020988								0	0	0	0.2489	1	29882	29882		6.7232	0	1				50893	1654	29012	29013	62396	62396					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2800903320312	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.29	1	115.27	114.77	115.77	-0.020988								0	0	0	0.2489	1	29903	29903		6.7232	0	1				50894	1654	29012	29013	62397	62397					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2794189453125	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.44	1	115.42	114.92	115.92	-0.020988								0	0	0	0.2489	1	29939	29939		6.7232	0	1				50895	1654	29012	29013	62398	62398					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2771606445312	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.68	1	115.66	115.16	116.16	-0.020988								0	0	0	0.2489	1	29991	29991		6.7232	0	1				50896	1654	29012	29013	62399	62399					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2796630859375	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.99	1	115.97	115.47	116.47	-0.020988								0	0	0	0.2489	1	30063	30063		6.7232	0	1				50897	1654	29012	29013	62400	62400					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2786865234375	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.03	1	118	117.5	118.5	-0.024147								0	0	0	0.2489	1	30527	30527		6.7232	0	1				50898	1654	29012	29013	62401	62401					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.280517578125	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.55	1	119.52	119.02	120.02	-0.024361								0	0	0	0.2489	1	30860	30860		6.7232	0	1				50899	1654	29012	29013	62402	62402					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2772827148438	2	567.261122	1132.50769	0.20597	0.00011684	-0.49553	-0.00028109	-0.28956	-0.00016426	567.2609544211128	113.96	0.36175	113.97	113.83	114.19	0.016708					67	43	2	0	0	0	0.33276	1	29620	29620		3.9444	0.66309	1	35330			50900	1654	29012	29013	62403	62403					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2794189453125	2	567.261122	1132.50769	0.20593	0.00011682	-0.56909	-0.00032282	-0.36316	-0.00020601	567.2609453470121	116.39	0.14481	116.42	116.32	116.46	0.020988					29	18	2	0	0	0	0.31417	1	30206	30206		6.7232	0.99131	1	22461			50901	1654	29012	29013	62404	62404					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2787475585938	2	567.261122	1132.50769	0.20592	0.00011681	-0.61201	-0.00034717	-0.40609	-0.00023036	567.2608627835434	117.63	0.21431	117.66	117.56	117.78	0.023476					38	26	2	0	0	0	0.31417	1	30510	30510		6.7232	0.99131	1	17208			50902	1654	29012	29013	62405	62405					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2785034179688	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.56	1	114.58	114.08	115.08	0.016708								0	0	0	0.2489	1	29791	29791		6.7232	0	1				50903	1654	29012	29013	62406	62406					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2787475585938	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.72	1	114.73	114.23	115.23	0.016708								0	0	0	0.2489	1	29828	29828		6.7232	0	1				50904	1654	29012	29013	62407	62407					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.279541015625	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.62	1	115.64	115.14	116.14	0.018738								0	0	0	0.2489	1	30025	30025		6.7232	0	1				50905	1654	29012	29013	62408	62408					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2797241210938	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.88	1	115.9	115.4	116.4	0.018738								0	0	0	0.2489	1	30087	30087		6.7232	0	1				50906	1654	29012	29013	62409	62409					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2800903320312	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.11	1	117.13	116.63	117.63	0.021553								0	0	0	0.2489	1	30369	30369		6.7232	0	1				50907	1654	29012	29013	62410	62410					-0.05326259893195129
TYPNTYIFD	9	Unmodified	_TYPNTYIFD_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.279052734375	2	567.261122	1132.50769	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.62	1	118.65	118.15	119.15	0.026253								0	0	0	0.2489	1	30712	30712		6.7232	0	1				50908	1654	29012	29013	62411	62411					-0.05326259893195129
TYPNYLPLY	9	Unmodified	_TYPNYLPLY_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2;ENST00000482393.1_1_13:103309549-103320211:+|nuORF;ENST00000466153.5_1_13:103307300-103330663:+|nuORF	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.289306640625	2	572.289682	1142.56481	0.38391	0.00021971	-0.1355	-7.7543E-05	0.24841	0.00014216	572.2895238783572	75.021	1.079	75.073	74.782	75.861	0.052361					64	39	2	0	0	0	0.051692	1	19257	19257		52.268	33.011	1	269340			50909	3826	29013	29014	62412	62412					-0.0007679261680095806
TYPNYLPLY	9	Unmodified	_TYPNYLPLY_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2;ENST00000482393.1_1_13:103309549-103320211:+|nuORF;ENST00000466153.5_1_13:103307300-103330663:+|nuORF	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.792236328125	2	572.289682	1142.56481	0.48088	0.0002752	-0.16246	-9.2976E-05	0.31842	0.00018223	572.2894713611603	75.08	1.1015	75.048	74.755	75.857	-0.031479					72	40	2	0	0	0	0.16283	1	19256	19256		29.082	9.8246	1	307220			50910	3826	29013	29014	62413	62413					-0.0007679261680095806
TYPPHQWV	8	Unmodified	_TYPPHQWV_					0	0	0		ENST00000450728.1_1_2:200334820-200335477:+|nuORF	ENST00000450728.1_1_2:200334820-200335477:+|nuORF	ENST00000450728.1_1_2:200334820-200335477:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2924194335938	2	514.253434	1026.49232	-0.20954	-0.00010776	-0.024656	-1.2679E-05	-0.2342	-0.00012044	514.2533120838552	12.95	0.42612	12.883	12.763	13.189	-0.067496					25	14	2	0	0	0	0.34414	1	303	303		0.52476	0	1	50821			50911	10640	29014	29015	62414	62414					-0.019870818997105744
TYPPSYNLTF	10	Unmodified	_TYPPSYNLTF_					0	0	0		ST14|p.G638Afs*124|1|0.24|ENSG00000149418|chr11:130200054-130200054|G/-|frameshift_variant;ENSG00000149418|ENST00000278742|ST14;ENST00000524718.5_1_11:130059967-130066600:+|nuORF	ST14|p.G638Afs*124|1|0.24|ENSG00000149418|chr11:130200054-130200054|G/-|frameshift_variant	ST14|p.G638Afs*124|1|0.24|ENSG00000149418|chr11:130200054-130200054|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.8117065429688	2	601.790047	1201.56554	0.40201	0.00024193	1.5697	0.00094462	1.9717	0.0011865	601.790399287905	69.774	1.8176	69.774	68.951	70.768	0					168	65	3	0	0	0	0.31681	1	17654	17654		18.373	4.467	1	309430			50912	23381	29015	29016	62415	62415					-0.027179979677839583
TYPQHHLQ	8	Unmodified	_TYPQHHLQ_					0	0	0		ENST00000269033.7_1_17:28011643-28257046:-|nuORF	ENST00000269033.7_1_17:28011643-28257046:-|nuORF	ENST00000269033.7_1_17:28011643-28257046:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.27099609375	2	512.253966	1022.49338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.685	1	96.685	96.185	97.185	0								0	0	0	0.36009	1	25840	25840		10.074	2.7847	1				50913	9070	29016	29017	62416	62416					-0.01696867530813506
TYPQLEGFKF	10	Unmodified	_TYPQLEGFKF_					0	0	0		nc|ENSG00000128815|Q6ZS81-2|WDFY4;nc|ENSG00000128815|Q6ZS81-3|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4	nc|ENSG00000128815|Q6ZS81-2|WDFY4	nc|ENSG00000128815|Q6ZS81-2|WDFY4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	615.3140258789062	2	615.313689	1228.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.898	1	66.982	66.482	67.482	0.083832								0	0	0	0.0032193	1	16761	16761		85.764	58.881	1				50914	3392	29017	29018	62417	62417					0.007662813032311533
TYPQTPLHL	9	Unmodified	_TYPQTPLHL_					0	0	0		ENSG00000132109|ENST00000254436|TRIM21;nc|ENSG00000132109|P19474-2|TRIM21	ENSG00000132109|ENST00000254436|TRIM21	ENSG00000132109|ENST00000254436|TRIM21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7772216796875	2	535.287474	1068.5604	0.31916	0.00017084	0.23908	0.00012797	0.55824	0.00029882	535.2877608637452	51.455	0.42827	51.502	51.296	51.725	0.046577					32	15	3	0	0	0	0.25202	1	11970	11970		10.824	5.5933	1	453730			50915	3609	29018	29019	62418	62418					0.028857429603021956
TYPSPDIFLVI	11	Unmodified	_TYPSPDIFLVI_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3683471679688	2	632.844822	1263.67509	0.011138	7.0487E-06	1.1058	0.0006998	1.1169	0.00070685	632.8451643438959	97.855	0.34386	97.855	97.656	98	0					61	38	2	0	0	0	0.36257	1	26161	26161		16.149	7.4037	1	65144			50916	3453	29019	29020	62419	62419					0.05380007651547203
TYPSPDIFLVI	11	Unmodified	_TYPSPDIFLVI_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3695068359375	2	632.844822	1263.67509	0.17857	0.000113	0.66704	0.00042213	0.84561	0.00053514	632.8450350426477	97.879	0.21393	97.941	97.766	97.98	0.061516					34	25	2	0	0	0	0.33056	1	26163	26163		15.248	9.9516	1	83670			50917	3453	29019	29020	62420	62420					0.05380007651547203
TYPSPDIFLVI	11	Unmodified	_TYPSPDIFLVI_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3687744140625	2	632.844822	1263.67509	0.4407	0.0002789	0.41699	0.00026389	0.8577	0.00054279	633.3469484327505	97.852	0.34906	97.845	97.648	97.997	-0.0068207					54	38	2	0	0	0	0.19931	2	26169	26169;26230		31.268	21.194	1	125500			50918	3453	29019	29020	62421;62422	62421					0.05380007651547203
TYPVFLKQVV	10	Unmodified	_TYPVFLKQVV_					0	0	0			REV__CHM|p.M554Kfs*5|1|0.05|ENSG00000188419|chrX:85873161-85873162|-/GTAGTACCATT|frameshift_variant	REV__CHM|p.M554Kfs*5|1|0.05|ENSG00000188419|chrX:85873161-85873162|-/GTAGTACCATT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.2850341796875	2	597.350074	1192.6856	0.44039	0.00026307	0.11969	7.1498E-05	0.56009	0.00033457	597.350000887814	55.288	0.57051	55.288	55.088	55.658	0					32	20	2	0	0	0	0.31629	1	13276	13276		6.2058	6.2058	1	564300	+		50919	13149	29020	29021	62423	62423					0.09696035096658306
TYPVFLKQVV	10	Unmodified	_TYPVFLKQVV_					0	0	0			REV__CHM|p.M554Kfs*5|1|0.05|ENSG00000188419|chrX:85873161-85873162|-/GTAGTACCATT|frameshift_variant	REV__CHM|p.M554Kfs*5|1|0.05|ENSG00000188419|chrX:85873161-85873162|-/GTAGTACCATT|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	597.350074	1192.6856	0.72119	0.0004308	0.0088099	5.2626E-06	0.73	0.00043607	597.3500099443877	55.254	0.59056	55.325	55.055	55.646	0.070889	-0.042914	-0.00023147	NaN	6.2058	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402670	+		50920	13149	29020	29021							0.09696035096658306
TYPVQEYFL	9	Unmodified	_TYPVQEYFL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.K592Rfs*19|1|0.3|ENSG00000135829|chr1:182874910-182874910|A/-|frameshift_variant;ENST00000436565.2_1_13:77560670-77561054:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.2512817382812	2	580.28714	1158.55973	0.21629	0.00012551	0.45599	0.00026461	0.67228	0.00039012	580.2867895579742	76.896	0.75486	76.951	76.453	77.208	0.055412					46	26	2	0	0	0	0.22674	1	19740	19740		22.736	4.6013	1	111090			50921	3909	29021	29022	62424	62424					-0.013210964794325264
TYPVQEYFL	9	Unmodified	_TYPVQEYFL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.K592Rfs*19|1|0.3|ENSG00000135829|chr1:182874910-182874910|A/-|frameshift_variant;ENST00000436565.2_1_13:77560670-77561054:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	580.28714	1158.55973	0.29986	0.000174	-0.17065	-9.9024E-05	0.12921	7.4979E-05	580.2865045822921	76.796	1.1835	76.796	75.996	77.179	0	-0.076936	-0.00032291	NaN	22.736	53	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132310			50922	3909	29021	29022							-0.013210964794325264
TYPVQEYFL	9	Unmodified	_TYPVQEYFL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;DHX9|p.K592Rfs*19|1|0.3|ENSG00000135829|chr1:182874910-182874910|A/-|frameshift_variant;ENST00000436565.2_1_13:77560670-77561054:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	580.28714	1158.55973	0.50545	0.00029331	0.078618	4.5621E-05	0.58407	0.00033893	580.2866221007548	76.904	1.0558	76.872	76.29	77.346	-0.031334	-0.00095711	-3.3626E-05	NaN	22.736	59	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114010			50923	3909	29021	29022							-0.013210964794325264
TYQDIFRDF	9	Unmodified	_TYQDIFRDF_					0	0	0		ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF	ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.7850341796875	2	602.785296	1203.55604	0.48361	0.00029151	-1.7562	-0.0010586	-1.2726	-0.00076709	602.7831950550374	68.204	0.84406	68.204	67.942	68.786	0					54	31	3	0	0	0	0.0074885	1	17173	17173		83.278	55.649	1	728320			50924	2556	29022	29023	62425	62425					-0.037597662533016774
TYQDIFRDF	9	Unmodified	_TYQDIFRDF_					0	0	0		ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF	ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.7855224609375	2	602.785296	1203.55604	0.49066	0.00029576	-2.7107	-0.001634	-2.2201	-0.0013382	602.7833363042906	68.083	0.9109	68.161	67.925	68.836	0.078041					66	33	3	0	0	0	0.037639	1	17123	17123		83.278	35.529	1	599300			50925	2556	29022	29023	62426	62426					-0.037597662533016774
TYQDIFRDF	9	Unmodified	_TYQDIFRDF_					0	0	0		ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF	ENSG00000114331|ENST00000326793|ACAP2	ENSG00000114331|ENST00000326793|ACAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.7858276367188	2	602.785296	1203.55604	0.42143	0.00025403	-1.9339	-0.0011657	-1.5125	-0.00091172	602.7838442824075	68.26	0.80062	68.241	67.938	68.739	-0.01915					62	28	3	0	0	0	0.0071872	1	17208	17208		101.54	59.704	1	849540			50926	2556	29022	29023	62427	62427					-0.037597662533016774
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.269775390625	2	548.269478	1094.5244	0.49375	0.00027071	-0.11135	-6.105E-05	0.3824	0.00020966	548.2695729766459	49.64	2.3223	49.64	49.243	51.565	0					237	85	5	0	0	0	3.4262E-07	7	11436	11387;11436;11485;11534;11582;11630;11757		166.77	97.664	1	19134000			50927	7227	29023	29024	62428;62429;62430;62431;62432;62433;62434	62429					-0.019077590072356543
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3536987304688	2	548.269478	1094.5244	0.41661	0.00022841	-0.90834	-0.00049802	-0.49174	-0.0002696	548.7701626133934	51.867	0.843	51.867	51.481	52.324	0					56	30	3	0	0	0	0.15943	1	12169	12169		32.786	13.424	1	383840			50928	7227	29023	29024	62435	62435					-0.019077590072356543
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2698974609375	2	548.269478	1094.5244	0.54568	0.00029918	-0.20408	-0.00011189	0.3416	0.00018729	548.2695211938334	49.608	2.0014	49.653	49.293	51.295	0.044888					229	74	5	0	0	0	3.361E-11	8	11441	11394;11441;11490;11540;11591;11640;11690;11750		192.32	113.59	1	21329000			50929	7227	29023	29024	62436;62437;62438;62439;62440;62441;62442;62443	62437					-0.019077590072356543
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.2698974609375	2	548.269478	1094.5244	0.50192	0.00027519	-0.11178	-6.1285E-05	0.39014	0.0002139	548.2695278543586	49.647	2.3148	49.668	49.257	51.572	0.020691					250	86	4	0	0	0	3.361E-11	8	11425	11379;11425;11474;11527;11576;11622;11670;11753		192.32	109.79	1	18541000			50930	7227	29023	29024	62444;62445;62446;62447;62448;62449;62450;62451	62445					-0.019077590072356543
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		nc|ENSG00000181222|P24928|POLR2A;ENSG00000181222|ENST00000674977|POLR2A	nc|ENSG00000181222|P24928|POLR2A	nc|ENSG00000181222|P24928|POLR2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8059692382812	2	548.269478	1094.5244	0.32243	0.00017678	-1.66	-0.00091012	-1.3375	-0.00073334	548.2699799072935	51.774	0.59084	51.784	51.561	52.151	0.0095673					49	21	4	0	0	0	0.13643	1	12188	12188		38.176	20.029	1	250320			50931	7227	29023	29024	62452	62452					-0.019077590072356543
TYQEVAQKF	9	Unmodified	_TYQEVAQKF_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2827758789062	2	557.282389	1112.55022	-0.034867	-1.9431E-05	0.22791	0.00012701	0.19304	0.00010758	557.2827600234515	38.742	3.0343	38.742	38.347	41.382	0					334	110	5	0	0	0	1.2902E-16	8	8083	8037;8083;8126;8169;8213;8257;8448;8500		211.85	149.28	1	21659000			50932	1435	29024	29025	62453;62454;62455;62456;62457;62458;62459;62460	62454					-0.001548647649542545
TYQEVAQKF	9	Unmodified	_TYQEVAQKF_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2831420898438	2	557.282389	1112.55022	0.31113	0.00017339	-0.10989	-6.1239E-05	0.20125	0.00011215	557.2826131645255	38.651	3.1361	38.742	38.347	41.483	0.090881					339	114	6	0	0	0	4.0835E-24	8	8095	8009;8054;8095;8144;8194;8375;8429;8476		241.96	170.04	1	26003000			50933	1435	29024	29025	62461;62462;62463;62464;62465;62466;62467;62468	62463					-0.001548647649542545
TYQEVAQKF	9	Unmodified	_TYQEVAQKF_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2827758789062	2	557.282389	1112.55022	0.38269	0.00021327	-0.17992	-0.00010027	0.20277	0.000113	557.2825399665079	38.672	2.8884	38.77	38.32	41.209	0.097527					354	104	5	0	0	0	2.1822000000000003E-19	6	8120	7995;8037;8079;8120;8167;8414		226.55	155.42	1	24807000			50934	1435	29024	29025	62469;62470;62471;62472;62473;62474	62472					-0.001548647649542545
TYQNDIALI	9	Unmodified	_TYQNDIALI_					0	0	0		ENSG00000205403|ENST00000394634|CFI;CON__Q32PI4	ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7774047851562	2	525.776939	1049.53933	0.25996	0.00013668	0.48641	0.00025574	0.74637	0.00039242	525.7771462860053	65.121	1.0138	65.121	64.807	65.821	0					92	36	3	0	0	0	0.0098873	3	16258	16207;16258;16308		79.596	22.125	1	1944300		+	50935	8287	29025	29026	62475;62476;62477	62476					0.016537328607682866
TYQNDIALI	9	Unmodified	_TYQNDIALI_					0	0	0		ENSG00000205403|ENST00000394634|CFI;CON__Q32PI4	ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.77685546875	2	525.776939	1049.53933	0.22771	0.00011973	0.53835	0.00028305	0.76606	0.00040278	525.7771341817876	65.054	1.2071	65.143	64.794	66.001	0.088882					104	44	3	0	0	0	0.014206	2	16167	16167;16263		72.968	14.289	1	2233500		+	50936	8287	29025	29026	62478;62479	62478					0.016537328607682866
TYQNDIALI	9	Unmodified	_TYQNDIALI_					0	0	0		ENSG00000205403|ENST00000394634|CFI;CON__Q32PI4	ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7774047851562	2	525.776939	1049.53933	0.21512	0.0001131	0.49838	0.00026204	0.7135	0.00037514	525.7771767818373	65.122	0.94306	65.11	64.78	65.723	-0.011337					91	34	3	0	0	0	0.0098873	3	16236	16190;16236;16309		79.596	22.125	1	2132900		+	50937	8287	29025	29026	62480;62481;62482	62481					0.016537328607682866
TYQNHSTE	8	Unmodified	_TYQNHSTE_					0	0	0		nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;LRP8|p.L926Pfs*37|1|0.1|ENSG00000157193|chr1:53249457-53249458|-/AGAAGAAAAATGG|frameshift_variant;ENSG00000157193|ENST00000306052|LRP8	nc|ENSG00000157193|Q14114-4|LRP8	nc|ENSG00000157193|Q14114-4|LRP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.3367004394531	2	490.209421	978.404288	0.52678	0.00025823	-1.7046	-0.0008356	-1.1778	-0.00057737	490.2087661825701	75.318	0.79733	75.286	75.031	75.829	-0.031487					86	29	4	0	0	0	0.34272	1	19482	19482		7.9102	5.3327	1	1989000			50938	5288	29026	29027	62483	62483					-0.08577747280992298
TYQQLFYLL	9	Unmodified	_TYQQLFYLL_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.3397827148438	2	594.818607	1187.62266	0.44413	0.00026418	-0.039761	-2.365E-05	0.40437	0.00024053	594.8187167463844	92.739	0.42433	92.828	92.608	93.032	0.089195					58	33	2	0	0	0	0.25843	1	24609	24609		5.7319	1.7875	1	119110			50939	4664	29027	29028	62484	62484					0.036354693086195766
TYQQLFYLL	9	Unmodified	_TYQQLFYLL_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	594.818607	1187.62266	0.37533	0.00022325	0.39918	0.00023744	0.77451	0.00046069	594.8186454624293	92.858	0.50772	92.858	92.679	93.187	0	0.03025	0.00038213	NaN	5.7319	55	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81633			50940	4664	29027	29028							0.036354693086195766
TYQQLFYLL	9	Unmodified	_TYQQLFYLL_					0	0	0		nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENSG00000145703|ENST00000274364|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	594.818607	1187.62266	0.55069	0.00032756	0.011473	6.8241E-06	0.56216	0.00033438	594.8186234816666	92.798	0.47418	92.798	92.643	93.117	0.00046539	-0.030013	-7.9102E-05	NaN	5.7319	62	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159810			50941	4664	29027	29028							0.036354693086195766
TYQRLYYQ	8	Unmodified	_TYQRLYYQ_					0	0	0			REV__ENST00000426776.5_1_12:46123676-46169876:+|nuORF	REV__ENST00000426776.5_1_12:46123676-46169876:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2794189453125	2	567.782556	1133.55056	0.15547	8.8271E-05	2.3351	0.0013258	2.4906	0.0014141	567.7815344710764	118.03	2.9976	118	116.98	119.97	-0.024147					676	377	2	0	0	0	0.34247	1	30345	30345		8.5933	2.3875	1	38197	+		50942	20907	29028	29029	62485	62485					-0.01087445045095592
TYQRWQFTL	9	Unmodified	_TYQRWQFTL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.2743530273438	2	621.81693	1241.61931	0.30145	0.00018744	-0.74559	-0.00046362	-0.44414	-0.00027617	621.8159881770208	62.993	0.56713	62.993	62.747	63.315	0					47	20	3	0	0	0	0.23622	1	15613	15613		23.79	12.966	1	523330			50943	6781	29029	29030	62486	62486					0.008162192546024016
TYQRWQFTL	9	Unmodified	_TYQRWQFTL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.2742309570312	2	621.81693	1241.61931	0.16762	0.00010423	-1.4187	-0.00088216	-1.2511	-0.00077793	621.8154098581077	63.072	0.62678	63.064	62.832	63.459	-0.0085526					35	22	2	0	0	0	0.2467	1	15597	15597		18.373	5.3306	1	355830			50944	6781	29029	29030	62487	62487					0.008162192546024016
TYQSITERI	9	Unmodified	_TYQSITERI_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7929077148438	2	555.793121	1109.57169	0.037109	2.0625E-05	0.4129	0.00022949	0.45001	0.00025011	555.7933156156773	42.354	0.86925	42.354	42.085	42.954	0					52	31	3	0	0	0	0.094714	1	9238	9238		59.052	22.546	1	569880			50945	3575	29030	29031	62488	62488					0.021285202637500333
TYQSITERI	9	Unmodified	_TYQSITERI_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7930297851562	2	555.793121	1109.57169	0.43864	0.0002438	-0.43524	-0.00024191	0.0034018	1.8907E-06	555.7928563743703	41.898	0.68502	41.988	41.807	42.492	0.090252					48	24	3	0	0	0	0.021777	1	9109	9109		79.427	31.833	1	886950			50946	3575	29030	29031	62489	62489					0.021285202637500333
TYQVLAVTF	9	Unmodified	_TYQVLAVTF_					0	0	0		ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40;ENST00000474025.1_1_1:31744094-31762265:-|nuORF;ENST00000489853.1_1_1:31732921-31754364:-|nuORF	ENSG00000060688|ENST00000263694|SNRNP40	ENSG00000060688|ENST00000263694|SNRNP40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2850341796875	2	521.2844	1040.55425	0.68857	0.00035894	-0.45082	-0.00023501	0.23775	0.00012393	521.2844258656562	77.23	3.3993	77.23	76.725	80.124	0					366	130	5	0	0	0	4.3881E-05	4	19973	19879;19921;19973;20021		149.91	57.423	1	23301000			50947	750	29031	29032	62490;62491;62492;62493	62492					0.035592247287468126
TYQVLAVTF	9	Unmodified	_TYQVLAVTF_					0	0	0		ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40;ENST00000474025.1_1_1:31744094-31762265:-|nuORF;ENST00000489853.1_1_1:31732921-31754364:-|nuORF	ENSG00000060688|ENST00000263694|SNRNP40	ENSG00000060688|ENST00000263694|SNRNP40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2850341796875	2	521.2844	1040.55425	0.58808	0.00030656	-0.3086	-0.00016087	0.27948	0.00014569	521.2844800448258	77.189	3.7671	77.245	76.541	80.308	0.05542					402	144	5	0	0	0	5.7257E-07	5	19940	19853;19897;19940;19991;20032		157.8	50.608	1	21560000			50948	750	29031	29032	62494;62495;62496;62497;62498	62496					0.035592247287468126
TYQVLAVTF	9	Unmodified	_TYQVLAVTF_					0	0	0		ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40;ENST00000474025.1_1_1:31744094-31762265:-|nuORF;ENST00000489853.1_1_1:31732921-31754364:-|nuORF	ENSG00000060688|ENST00000263694|SNRNP40	ENSG00000060688|ENST00000263694|SNRNP40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2847290039062	2	521.2844	1040.55425	0.77184	0.00040235	-0.55565	-0.00028965	0.2162	0.0001127	521.2843461213388	77.267	3.6169	77.236	76.754	80.371	-0.031334					387	136	5	0	0	0	7.3453E-05	3	20001	19911;19959;20001		145.13	55.534	1	22754000			50949	750	29031	29032	62499;62500;62501	62501					0.035592247287468126
TYRFSESSER	10	Unmodified	_TYRFSESSER_					0	0	0		ENSG00000135338|ENST00000369846|LCA5	ENSG00000135338|ENST00000369846|LCA5	ENSG00000135338|ENST00000369846|LCA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.23809814453125	3	421.198436	1260.57348	0.13466	5.672E-05	-0.084161	-3.5448E-05	0.050503	2.1272E-05	421.1985580694506	33.609	0.93488	33.609	33.285	34.22	0					82	33	4	0	0	0	0.32034	1	6527	6527		2.6312	0	1	430480			50950	3864	29032	29033	62502	62502					-0.04638470718282406
TYRGVRYI	8	Unmodified	_TYRGVRYI_					0	0	0		ENSG00000180316|ENST00000636260|PNPLA1;nc|ENSG00000180316|Q8N8W4|PNPLA1;nc|ENSG00000180316|Q8N8W4-2|PNPLA1	ENSG00000180316|ENST00000636260|PNPLA1	ENSG00000180316|ENST00000636260|PNPLA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8092651367188	2	514.287808	1026.56106	0.15969	8.2124E-05	0.749	0.0003852	0.90869	0.00046733	514.2880057227196	45.708	0.42184	45.768	45.677	46.098	0.059837					22	14	2	0	0	0	0.34218	1	10321	10321		9.3474	6.0661	1	646420			50951	7178	29033	29034	62503	62503					0.048845823999727145
TYRICLVP	8	Unmodified	_TYRICLVP_					0	0	0		ENSG00000185070|ENST00000330753|FLRT2	ENSG00000185070|ENST00000330753|FLRT2	ENSG00000185070|ENST00000330753|FLRT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.23406982421875	2	482.767863	963.521173	0.4029	0.00019451	-0.73999	-0.00035724	-0.33709	-0.00016274	482.7675352630565	44.645	1.3373	44.645	44.383	45.72	0					93	48	2	0	0	0	0.32778	1	9884	9884		20.871	10.047	1	614480			50952	7505	29034	29035	62504	62504					0.03795319405060127
TYRIHPILF	9	Unmodified	_TYRIHPILF_					0	0	0			REV__ENSG00000108839|ENST00000251535|ALOX12	REV__ENSG00000108839|ENST00000251535|ALOX12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.2875366210938	2	580.334759	1158.65496	0.3358	0.00019488	0.20618	0.00011965	0.54198	0.00031453	580.3347054410102	75.144	0.86444	75.196	74.971	75.836	0.052361					39	31	2	0	0	0	0.25066	1	19222	19222		11.64	2.2929	1	165120	+		50953	14611	29035	29036	62505	62505					0.08198301502284266
TYRIHPILF	9	Unmodified	_TYRIHPILF_					0	0	0			REV__ENSG00000108839|ENST00000251535|ALOX12	REV__ENSG00000108839|ENST00000251535|ALOX12	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	580.334759	1158.65496	0.41236	0.00023931	-0.6722	-0.0003901	-0.25985	-0.0001508	580.3343657748075	75.615	0.49012	75.583	75.286	75.777	-0.031479	0.19369	-0.00037443	NaN	11.64	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107320	+		50954	14611	29035	29036							0.08198301502284266
TYRKMFLY	8	Unmodified	_TYRKMFLY_					0	0	0			REV__ENSG00000075429|ENST00000533854|CACNG5	REV__ENSG00000075429|ENST00000533854|CACNG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.8134765625	2	561.294245	1120.57394	0.53667	0.00030123	-3.7833	-0.0021235	-3.2466	-0.0018223	561.7944065984136	85.211	0.41154	85.292	85.203	85.615	0.080879					21	15	2	0	0	0	0.34337	1	22364	22364		5.2307	0.90143	1	81034	+		50955	13813	29036	29037	62506	62506					0.0184727746786848
TYRLFAVVY	9	Unmodified	_TYRLFAVVY_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10;ENST00000548656.2_1_14:19411434-19411701:-|nuORF	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.3135986328125	2	566.313492	1130.61243	0.085166	4.8231E-05	0.13803	7.8169E-05	0.2232	0.0001264	566.313563827255	66.976	1.1567	66.962	66.603	67.759	-0.013588					110	40	4	0	0	0	0.026033	1	16752	16752		82.529	54.042	1	1620700			50956	1815	29037	29038	62507	62507					0.052349063740621204
TYRLFAVVY	9	Unmodified	_TYRLFAVVY_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10;ENST00000548656.2_1_14:19411434-19411701:-|nuORF	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	566.313492	1130.61243	0.25263	0.00014307	-0.096129	-5.4439E-05	0.1565	8.8629E-05	566.3134220828674	66.865	1.1319	66.865	66.6	67.732	0	-0.026398	-6.0914E-05	NaN	82.529	121	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1532500			50957	1815	29037	29038							0.052349063740621204
TYRLFAVVY	9	Unmodified	_TYRLFAVVY_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10;ENST00000548656.2_1_14:19411434-19411701:-|nuORF	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	566.313492	1130.61243	0.35965	0.00020368	-0.15625	-8.8486E-05	0.2034	0.00011519	566.3133588107031	66.764	1.2672	66.848	66.572	67.839	0.083832	-0.044173	-0.00012901	NaN	82.529	128	44	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1825400			50958	1815	29037	29038							0.052349063740621204
TYRMSEFCSF	10	Unmodified	_TYRMSEFCSF_					0	0	0		Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|114|1|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|114|1|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|114|1|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.1792297363281	3	424.17922	1269.51583	0.051058	2.1658E-05	-0.46049	-0.00019533	-0.40943	-0.00017367	424.1791703059555	49.531	1.4366	49.531	48.97	50.407	0					166	52	5	0	0	0	0.31867	4	11372	11372;11429;11476;11523		15.739	4.4808	1	2775000			50959	12381	29038	29039	62508;62509;62510;62511	62508					-0.10814772239723425
TYRMSEFCSF	10	Unmodified	_TYRMSEFCSF_					0	0	0		Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|114|1|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|114|1|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|114|1|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.1791687011719	3	424.17922	1269.51583	-0.096798	-4.106E-05	-0.31558	-0.00013386	-0.41238	-0.00017492	424.1792075281006	49.511	1.3874	49.556	49.045	50.433	0.044891					147	51	4	0	0	0	0.24105	3	11427	11386;11427;11479		18.721	4.4808	1	3119200			50960	12381	29038	29039	62512;62513;62514	62513					-0.10814772239723425
TYRMSEFCSF	10	Unmodified	_TYRMSEFCSF_					0	0	0		Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|114|1|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|114|1|anti-sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|114|1|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.1793212890625	3	424.17922	1269.51583	-0.08905	-3.7773E-05	-0.21077	-8.9406E-05	-0.29983	-0.00012718	424.17924825380084	49.447	1.461	49.48	49.045	50.506	0.032043					151	53	4	0	0	0	0.31867	3	11335	11335;11387;11493		15.739	8.7015	1	3024300			50961	12381	29038	29039	62515;62516;62517	62515					-0.10814772239723425
TYRNVMEQF	9	Oxidation (M)	_TYRNVM(Oxidation (M))EQF_		TYRNVM(1)EQF		TYRNVM(67)EQF	0	0	1		ENST00000462558.5_1_7:97937677-98030347:-|nuORF;ENSG00000006453|ENST00000005260|BAIAP2L1	ENST00000462558.5_1_7:97937677-98030347:-|nuORF	ENST00000462558.5_1_7:97937677-98030347:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.2772216796875	2	602.27678	1202.53901	0.078148	4.7067E-05	0.15985	9.6275E-05	0.238	0.00014334	602.2767654771401	35.415	0.3191	35.415	35.2	35.52	0					22	11	3	0	0	0	0.018042	1	7091	7091		67.081	37.999	1	318850			50962	358	29039	29040	62518	62518		32			-0.054160101307388686
TYRNVMEQF	9	Oxidation (M)	_TYRNVM(Oxidation (M))EQF_					0	0	1		ENST00000462558.5_1_7:97937677-98030347:-|nuORF;ENSG00000006453|ENST00000005260|BAIAP2L1	ENST00000462558.5_1_7:97937677-98030347:-|nuORF	ENST00000462558.5_1_7:97937677-98030347:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	602.27678	1202.53901	0.21399	0.00012888	-0.048239	-2.9053E-05	0.16575	9.9829E-05	602.2767580546782	35.399	0.356	35.475	35.234	35.59	0.075306	0.054282	-0.00021178	NaN	67.081	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310040			50963	358	29039	29040				32			-0.054160101307388686
TYRNVMEQF	9	Oxidation (M)	_TYRNVM(Oxidation (M))EQF_					0	0	1		ENST00000462558.5_1_7:97937677-98030347:-|nuORF;ENSG00000006453|ENST00000005260|BAIAP2L1	ENST00000462558.5_1_7:97937677-98030347:-|nuORF	ENST00000462558.5_1_7:97937677-98030347:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	602.27678	1202.53901	-0.30798	-0.00018549	0.31669	0.00019074	0.0087126	5.2474E-06	602.276932939917	35.294	0.39211	35.372	35.167	35.559	0.077377	-0.048845	0.0002278	NaN	67.081	26	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322290			50964	358	29039	29040				32			-0.054160101307388686
TYRPLNDVHI	10	Unmodified	_TYRPLNDVHI_					0	0	0		ENST00000463866.1_1_2:201736120-201746236:-|nuORF;ENSG00000240344|ENST00000392283|PPIL3;nc|ENSG00000240344|Q9H2H8-2|PPIL3	ENST00000463866.1_1_2:201736120-201746236:-|nuORF	ENST00000463866.1_1_2:201736120-201746236:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.9007873535156	3	409.887533	1226.64077	-0.078585	-3.2211E-05	1.0264	0.00042071	0.94782	0.0003885	410.22227422030045	43.446	0.56225	43.446	43.257	43.819	0					41	20	3	0	0	0	0.12628	1	9542	9542		31.462	15.313	1	495350			50965	8520	29040	29041	62519	62519					0.036516042833454776
TYRPLNDVHI	10	Unmodified	_TYRPLNDVHI_					0	0	0		ENST00000463866.1_1_2:201736120-201746236:-|nuORF;ENSG00000240344|ENST00000392283|PPIL3;nc|ENSG00000240344|Q9H2H8-2|PPIL3	ENST00000463866.1_1_2:201736120-201746236:-|nuORF	ENST00000463866.1_1_2:201736120-201746236:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.9010314941406	3	409.887533	1226.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.995	1	43.08	42.58	43.58	0.085197								0	0	0	0.236	1	9404	9404		26.121	13.248	1				50966	8520	29040	29041	62520	62520					0.036516042833454776
TYRPLNDVHI	10	Unmodified	_TYRPLNDVHI_					0	0	0		ENST00000463866.1_1_2:201736120-201746236:-|nuORF;ENSG00000240344|ENST00000392283|PPIL3;nc|ENSG00000240344|Q9H2H8-2|PPIL3	ENST00000463866.1_1_2:201736120-201746236:-|nuORF	ENST00000463866.1_1_2:201736120-201746236:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.90069580078125	3	409.887533	1226.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.164	1	43.248	42.748	43.748	0.083996								0	0	0	0.21122	1	9447	9447		33.821	20.949	1				50967	8520	29040	29041	62521	62521					0.036516042833454776
TYRRMLEQL	9	Unmodified	_TYRRMLEQL_					0	0	0		ENSG00000118407|ENST00000237172|FILIP1;nc|ENSG00000118407|Q7Z7B0-2|FILIP1	ENSG00000118407|ENST00000237172|FILIP1	ENSG00000118407|ENST00000237172|FILIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.5650939941406	3	403.885135	1208.63358	-0.53957	-0.00021792	-0.16974	-6.8555E-05	-0.70931	-0.00028648	403.88524446039054	35.42	0.80122	35.495	34.963	35.764	0.075306					42	28	2	0	0	0	0.25817	1	6992	6992		6.6304	0.84694	1	271180			50968	2825	29041	29042	62522	62522					0.03760548411264608
TYSAGPLDEPL	11	Unmodified	_TYSAGPLDEPL_					0	0	0			REV__ENSG00000166106|ENST00000299164|ADAMTS15	REV__ENSG00000166106|ENST00000299164|ADAMTS15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7854614257812	2	581.784961	1161.55537	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.758	1	59.854	59.354	60.354	0.095093								0	0	0	0.28946	1	14566	14566		21.537	2.175	1		+		50969	17292	29042	29043	62523	62523					-0.018946056930190025
TYSCLATNEL	10	Carbamidomethyl (C)	_TYSC(Carbamidomethyl (C))LATNEL_	TYSC(1)LATNEL		TYSC(46)LATNEL		0	1	0		ENSG00000129009|ENST00000249842|ISLR	ENSG00000129009|ENST00000249842|ISLR	ENSG00000129009|ENST00000249842|ISLR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.26806640625	2	586.268621	1170.52269	0.28918	0.00016954	-0.99337	-0.00058238	-0.70419	-0.00041284	586.2678410675813	70.608	0.61033	70.669	70.434	71.044	0.060783					40	21	2	0	0	0	0.11081	1	17908	17908		45.7	17.213	1	537990			50970	3406	29043	29044	62524	62524	4				-0.055751360874864986
TYSGLFCVTI	10	Unmodified	_TYSGLFCVTI_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;nc|ENSG00000078814|A7E2Y1-2|MYH7B;MYH7B|p.C565Sfs*80|1|0.19|ENSG00000078814|chr20:34988242-34988251|TGCATCGACC/-|frameshift_variant;ENSG00000078814|ENST00000262873|MYH7B;nc|ENSG00000078814|A7E2Y1|MYH7B	ENSG00000144821|ENST00000693548|MYH15;ENSG00000078814|ENST00000262873|MYH7B	ENSG00000144821|ENST00000693548|MYH15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2982788085938	2	552.275718	1102.53688	0.34574	0.00019094	-1.4963	-0.00082637	-1.1506	-0.00063543	552.2750009954314	75.827	0.50877	75.881	75.567	76.076	0.053421					36	18	3	0	0	0	0.23848	1	19551	19551		37.974	5.6685	1	269740			50971	4615;1120	29044	29045	62525	62525					-0.010284388685477097
TYSHGNYLF	9	Unmodified	_TYSHGNYLF_					0	0	0		ENSG00000124333|ENST00000286448|VAMP7;nc|ENSG00000292366|P51809-2|VAMP7	ENSG00000124333|ENST00000286448|VAMP7	ENSG00000124333|ENST00000286448|VAMP7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8345947265625	2	551.253631	1100.49271	0.69078	0.00038079	0.76339	0.00042082	1.4542	0.00080161	551.2541773235147	46.943	0.48361	46.943	46.76	47.244	0					31	16	3	0	0	0	0.20881	1	10588	10588		27.629	8.1898	1	603420			50972	3154	29045	29046	62526	62526					-0.053517069705321774
TYSHGNYLF	9	Unmodified	_TYSHGNYLF_					0	0	0		ENSG00000124333|ENST00000286448|VAMP7;nc|ENSG00000292366|P51809-2|VAMP7	ENSG00000124333|ENST00000286448|VAMP7	ENSG00000124333|ENST00000286448|VAMP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2538452148438	2	551.253631	1100.49271	0.61219	0.00033747	0.65114	0.00035894	1.2633	0.00069641	551.2539320102743	46.651	0.42842	46.704	46.527	46.955	0.052574					26	15	2	0	0	0	0.17277	1	10556	10556		27.629	11.782	1	657040			50973	3154	29045	29046	62527	62527					-0.053517069705321774
TYSHGNYLF	9	Unmodified	_TYSHGNYLF_					0	0	0		ENSG00000124333|ENST00000286448|VAMP7;nc|ENSG00000292366|P51809-2|VAMP7	ENSG00000124333|ENST00000286448|VAMP7	ENSG00000124333|ENST00000286448|VAMP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.255126953125	2	551.253631	1100.49271	0.51502	0.00028391	0.49272	0.00027161	1.0077	0.00055552	551.2540151733031	46.738	0.73925	46.792	46.516	47.256	0.054371					43	25	3	0	0	0	0.15219	1	10604	10604		30.637	12.502	1	505820			50974	3154	29045	29046	62528	62528					-0.053517069705321774
TYSHQQVI	8	Unmodified	_TYSHQQVI_					0	0	0		nc|ENSG00000049323|Q14766-3|LTBP1;nc|ENSG00000049323|Q14766-2|LTBP1;nc|ENSG00000049323|Q14766-5|LTBP1;ENSG00000049323|ENST00000404816|LTBP1;nc|ENSG00000049323|Q14766-4|LTBP1	nc|ENSG00000049323|Q14766-3|LTBP1	nc|ENSG00000049323|Q14766-3|LTBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7769470214844	2	488.248349	974.482145	0.43616	0.00021296	-0.49544	-0.0002419	-0.059274	-2.8941E-05	488.2482264600663	36.385	0.3676	36.468	36.362	36.729	0.082355					17	12	2	0	0	0	0.28969	1	7410	7410		36.044	3.7387	1	149940			50975	649	29046	29047	62529	62529					-0.006116896249409365
TYSIGFLRF	9	Unmodified	_TYSIGFLRF_					0	0	0		ENST00000474416.1_1_22:38622784-38627359:-|nuORF;ENST00000468535.5_1_7:1589488-1590526:-|nuORF;ENST00000474813.5_1_7:1589488-1595099:-|nuORF;ENST00000436674.5_1_22:38617478-38642853:-|nuORF;ENSG00000198792|ENST00000361906|TMEM184B;ENSG00000164855|ENST00000297477|TMEM184A	ENST00000474416.1_1_22:38622784-38627359:-|nuORF	ENST00000474416.1_1_22:38622784-38627359:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2984619140625	2	552.297842	1102.58113	0.11364	6.2762E-05	0.47454	0.00026209	0.58818	0.00032485	552.2980225610672	75.99	0.59882	75.99	75.739	76.338	0					48	21	3	0	0	0	0.0010463	2	19589	19532;19589		122.18	86.052	1	567210			50976	5886	29047	29048	62530;62531	62531					0.03394333339952027
TYSIGFLRF	9	Unmodified	_TYSIGFLRF_					0	0	0		ENST00000474416.1_1_22:38622784-38627359:-|nuORF;ENST00000468535.5_1_7:1589488-1590526:-|nuORF;ENST00000474813.5_1_7:1589488-1595099:-|nuORF;ENST00000436674.5_1_22:38617478-38642853:-|nuORF;ENSG00000198792|ENST00000361906|TMEM184B;ENSG00000164855|ENST00000297477|TMEM184A	ENST00000474416.1_1_22:38622784-38627359:-|nuORF	ENST00000474416.1_1_22:38622784-38627359:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2981567382812	2	552.297842	1102.58113	0.30426	0.00016804	0.50716	0.00028011	0.81143	0.00044815	552.2980060712978	75.975	0.75638	76.028	75.756	76.512	0.053413					48	26	3	0	0	0	0.00014042	1	19502	19502		134.3	92.201	1	729590			50977	5886	29047	29048	62532	62532					0.03394333339952027
TYSIGFLRF	9	Unmodified	_TYSIGFLRF_					0	0	0		ENST00000474416.1_1_22:38622784-38627359:-|nuORF;ENST00000468535.5_1_7:1589488-1590526:-|nuORF;ENST00000474813.5_1_7:1589488-1595099:-|nuORF;ENST00000436674.5_1_22:38617478-38642853:-|nuORF;ENSG00000198792|ENST00000361906|TMEM184B;ENSG00000164855|ENST00000297477|TMEM184A	ENST00000474416.1_1_22:38622784-38627359:-|nuORF	ENST00000474416.1_1_22:38622784-38627359:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2977905273438	2	552.297842	1102.58113	0.32646	0.00018031	0.29207	0.00016131	0.61853	0.00034161	552.2978306605991	75.975	0.65533	75.944	75.69	76.346	-0.031487					54	23	3	0	0	0	0.0016361	2	19520	19520;19574		114.65	80.547	1	648940			50978	5886	29047	29048	62533;62534	62533					0.03394333339952027
TYSIMIQKI	9	Oxidation (M)	_TYSIM(Oxidation (M))IQKI_		TYSIM(1)IQKI		TYSIM(110)IQKI	0	0	1		nc|ENSG00000111199|Q9HBA0-6|TRPV4;nc|ENSG00000111199|Q9HBA0-2|TRPV4;nc|ENSG00000111199|Q9HBA0-4|TRPV4;nc|ENSG00000111199|Q9HBA0-5|TRPV4;nc|ENSG00000111199|Q9HBA0-3|TRPV4;ENSG00000111199|ENST00000261740|TRPV4;chr12:109814827-109832318|405|12.71|0.6|4.42|-|ENST00000675670|TRPV4,TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.8046875	2	556.804642	1111.59473	0.43975	0.00024486	0.18433	0.00010264	0.62408	0.00034749	556.8047834699502	51.372	0.56731	51.372	51.108	51.676	0					50	20	3	0	0	0	0.0019475	1	12018	12018		110.67	51.996	1	636670			50979	130	29048	29049	62535	62535		10			0.04339823056852765
TYSIMIQKI	9	Oxidation (M)	_TYSIM(Oxidation (M))IQKI_		TYSIM(1)IQKI		TYSIM(83)IQKI	0	0	1		nc|ENSG00000111199|Q9HBA0-6|TRPV4;nc|ENSG00000111199|Q9HBA0-2|TRPV4;nc|ENSG00000111199|Q9HBA0-4|TRPV4;nc|ENSG00000111199|Q9HBA0-5|TRPV4;nc|ENSG00000111199|Q9HBA0-3|TRPV4;ENSG00000111199|ENST00000261740|TRPV4;chr12:109814827-109832318|405|12.71|0.6|4.42|-|ENST00000675670|TRPV4,TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8048095703125	2	556.804642	1111.59473	0.33264	0.00018521	0.19215	0.00010699	0.52478	0.0002922	556.804761800042	51.372	0.4761	51.419	51.196	51.672	0.046574					39	17	3	0	0	0	0.0079761	1	11996	11996		82.529	32.596	1	908730			50980	130	29048	29049	62536	62536		10			0.04339823056852765
TYSIMIQKI	9	Oxidation (M)	_TYSIM(Oxidation (M))IQKI_		TYSIM(1)IQKI		TYSIM(100)IQKI	0	0	1		nc|ENSG00000111199|Q9HBA0-6|TRPV4;nc|ENSG00000111199|Q9HBA0-2|TRPV4;nc|ENSG00000111199|Q9HBA0-4|TRPV4;nc|ENSG00000111199|Q9HBA0-5|TRPV4;nc|ENSG00000111199|Q9HBA0-3|TRPV4;ENSG00000111199|ENST00000261740|TRPV4;chr12:109814827-109832318|405|12.71|0.6|4.42|-|ENST00000675670|TRPV4,TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.8048095703125	2	556.804642	1111.59473	0.29376	0.00016356	0.5318	0.00029611	0.82556	0.00045967	556.8049216634961	51.494	0.63519	51.504	51.194	51.829	0.0095673					53	23	3	0	0	0	0.003317	1	12024	12024		99.755	57.916	1	657590			50981	130	29048	29049	62537	62537		10			0.04339823056852765
TYSISIYSP	9	Unmodified	_TYSISIYSP_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2711181640625	2	515.758215	1029.50188	0.069829	3.6015E-05	0.59477	0.00030676	0.6646	0.00034277	515.7584506708063	18.274	0.69098	18.157	17.84	18.531	-0.11739					56	23	4	0	0	0	0.31417	1	1818	1818		6.7232	0.96273	1	274410			50982	7251	29049	29050	62538	62538					-0.011693584048316552
TYSLEPGING	10	Unmodified	_TYSLEPGING_					0	0	0			REV__ENSG00000156395|ENST00000369701|SORCS3	REV__ENSG00000156395|ENST00000369701|SORCS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.77734375	2	525.758746	1049.50294	0.1998	0.00010504	0.15771	8.292E-05	0.35751	0.00018796	525.7589335685858	65.044	0.12985	65.133	65.06	65.19	0.088882					5	4	2	0	0	0	0.34325	1	16212	16212		13.906	0	1	117500	+		50983	16744	29050	29051	62539	62539					-0.01983144035943951
TYSNSAFQYF	10	Unmodified	_TYSNSAFQYF_					0	0	0		nc|ENSG00000211794|A0A0B4J271|TRAV12-3	nc|ENSG00000211794|A0A0B4J271|TRAV12-3	nc|ENSG00000211794|A0A0B4J271|TRAV12-3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.26953125	2	614.269478	1226.5244	0.31419	0.000193	-0.030852	-1.8952E-05	0.28334	0.00017405	614.2693239146897	68.659	0.48829	68.659	68.436	68.924	0					44	17	3	0	0	0	0.0012219	1	17297	17297		117.84	91.569	1	737620			50984	12930	29051	29052	62540	62540					-0.07979759007230314
TYSNSAFQYF	10	Unmodified	_TYSNSAFQYF_					0	0	0		nc|ENSG00000211794|A0A0B4J271|TRAV12-3	nc|ENSG00000211794|A0A0B4J271|TRAV12-3	nc|ENSG00000211794|A0A0B4J271|TRAV12-3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	613.8142700195312	2	614.269478	1226.5244	0.22222	0.0001365	-0.020588	-1.2646E-05	0.20163	0.00012385	614.2693681594616	68.605	0.52994	68.677	68.434	68.964	0.071938					46	19	3	0	0	0	0.15401	1	17303	17303		63.227	35.054	1	690030			50985	12930	29051	29052	62541	62541					-0.07979759007230314
TYSNSAFQYF	10	Unmodified	_TYSNSAFQYF_					0	0	0		nc|ENSG00000211794|A0A0B4J271|TRAV12-3	nc|ENSG00000211794|A0A0B4J271|TRAV12-3	nc|ENSG00000211794|A0A0B4J271|TRAV12-3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	613.81396484375	2	614.269478	1226.5244	0.2842	0.00017458	-0.21705	-0.00013333	0.067156	4.1252E-05	614.2693125005338	68.745	0.51703	68.726	68.458	68.975	-0.019157					41	18	3	0	0	0	0.18888	1	17335	17335		55.235	35.978	1	743270			50986	12930	29051	29052	62542	62542					-0.07979759007230314
TYSPALNKMF	10	Oxidation (M)	_TYSPALNKM(Oxidation (M))F_		TYSPALNKM(1)F		TYSPALNKM(210)F	0	0	1		nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;nc|ENSG00000141510|P04637-4|TP53;ENSG00000141510|ENST00000269305|TP53;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.H178Qfs*3|1|0.17|ENSG00000141510|chr17:7675078-7675079|-/T|frameshift_variant	nc|ENSG00000141510|P04637-5|TP53	nc|ENSG00000141510|P04637-5|TP53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.2921752929688	2	594.291899	1186.56925	0.41264	0.00024523	0.11356	6.7487E-05	0.52619	0.00031271	594.2919723792486	43.849	1.5225	43.849	43.307	44.829	0					202	55	6	0	0	0	2.6334E-20	4	9571	9571;9614;9656;9708		208.15	164.29	1	8167900			50987	4388	29052	29053	62543;62544;62545;62546	62543		556			-0.016576514655525898
TYSPALNKMF	10	Oxidation (M)	_TYSPALNKM(Oxidation (M))F_		TYSPALNKM(1)F		TYSPALNKM(230)F	0	0	1		nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;nc|ENSG00000141510|P04637-4|TP53;ENSG00000141510|ENST00000269305|TP53;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.H178Qfs*3|1|0.17|ENSG00000141510|chr17:7675078-7675079|-/T|frameshift_variant	nc|ENSG00000141510|P04637-5|TP53	nc|ENSG00000141510|P04637-5|TP53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.2921142578125	2	594.291899	1186.56925	0.56374	0.00033503	-0.16087	-9.5606E-05	0.40287	0.00023942	594.2918213709096	43.569	2.1572	43.646	42.914	45.071	0.077515					241	79	6	0	0	0	1.1870999999999999E-28	4	9570	9479;9527;9570;9619		232.37	182.44	1	8470300			50988	4388	29052	29053	62547;62548;62549;62550	62549		556			-0.016576514655525898
TYSPALNKMF	10	Oxidation (M)	_TYSPALNKM(Oxidation (M))F_		TYSPALNKM(1)F		TYSPALNKM(220)F	0	0	1		nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;nc|ENSG00000141510|P04637-4|TP53;ENSG00000141510|ENST00000269305|TP53;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.H178Qfs*3|1|0.17|ENSG00000141510|chr17:7675078-7675079|-/T|frameshift_variant	nc|ENSG00000141510|P04637-5|TP53	nc|ENSG00000141510|P04637-5|TP53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2921752929688	2	594.291899	1186.56925	0.46692	0.00027749	0.030565	1.8165E-05	0.49749	0.00029565	594.2918624391764	43.6	2.3642	43.684	43.115	45.48	0.083992					173	87	3	0	0	0	1.4303E-20	5	9562	9469;9518;9562;9611;9662		216.57	174.61	1	8730700			50989	4388	29052	29053	62551;62552;62553;62554;62555	62553		556			-0.016576514655525898
TYSVLVTLS	9	Unmodified	_TYSVLVTLS_					0	0	0			REV__ENSG00000196119|ENST00000284287|OR8A1	REV__ENSG00000196119|ENST00000284287|OR8A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7872009277344	2	491.776408	981.538263	-1.1184	-0.00054999	2.2355	0.0010994	1.1171	0.00054937	491.7772435003899	34.906	0.52037	34.981	34.631	35.151	0.075306					27	18	2	0	0	0	0.28128	1	6956	6956		11.64	0	1	125970	+		50990	18621	29053	29054	62556	62556					0.04675518491887942
TYSVSFPMF	9	Oxidation (M)	_TYSVSFPM(Oxidation (M))F_		TYSVSFPM(1)F		TYSVSFPM(150)F	0	0	1		ENST00000459779.1_1_1:53068081-53072661:+|nuORF;ENSG00000116157|ENST00000361314|GPX7	ENST00000459779.1_1_1:53068081-53072661:+|nuORF	ENST00000459779.1_1_1:53068081-53072661:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7468872070312	2	547.746793	1093.47903	0.41636	0.00022806	0.20849	0.0001142	0.62485	0.00034226	547.7467696679342	76.713	0.86669	76.713	76.193	77.06	0					99	31	4	0	0	0	1.576E-05	3	19719	19670;19719;19767		154.46	122.35	1	1244400			50991	2709	29054	29055	62557;62558;62559	62558		338			-0.06396700793970922
TYSVSFPMF	9	Oxidation (M)	_TYSVSFPM(Oxidation (M))F_		TYSVSFPM(1)F		TYSVSFPM(150)F	0	0	1		ENST00000459779.1_1_1:53068081-53072661:+|nuORF;ENSG00000116157|ENST00000361314|GPX7	ENST00000459779.1_1_1:53068081-53072661:+|nuORF	ENST00000459779.1_1_1:53068081-53072661:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7470092773438	2	547.746793	1093.47903	0.36379	0.00019927	0.29934	0.00016396	0.66313	0.00036323	547.7468183479227	76.631	0.92657	76.685	76.161	77.088	0.053413					98	32	4	0	0	0	1.576E-05	4	19684	19637;19684;19729;19772		154.46	124.24	1	1226300			50992	2709	29054	29055	62560;62561;62562;62563	62561		338			-0.06396700793970922
TYSVSFPMF	9	Oxidation (M)	_TYSVSFPM(Oxidation (M))F_		TYSVSFPM(1)F		TYSVSFPM(150)F	0	0	1		ENST00000459779.1_1_1:53068081-53072661:+|nuORF;ENSG00000116157|ENST00000361314|GPX7	ENST00000459779.1_1_1:53068081-53072661:+|nuORF	ENST00000459779.1_1_1:53068081-53072661:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7470092773438	2	547.746793	1093.47903	0.67474	0.00036959	-0.12653	-6.9305E-05	0.54821	0.00030028	547.7466526322711	76.756	0.90801	76.724	76.137	77.045	-0.031487					110	33	4	0	0	0	1.576E-05	3	19769	19670;19720;19769		154.46	122.35	1	1415800			50993	2709	29054	29055	62564;62565;62566	62566		338			-0.06396700793970922
TYTDKLFKF	9	Unmodified	_TYTDKLFKF_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3118896484375	2	581.810782	1161.60701	0.41917	0.00024388	0.37874	0.00022036	0.79791	0.00046423	581.8115018771339	53.299	3.0612	53.299	52.96	56.021	0					274	112	5	0	0	0	2.973E-07	9	12526	12526;12576;12625;12674;12722;12773;12824;12873;13180		168.54	118.6	1	64878000			50994	1455	29055	29056	62567;62568;62569;62570;62571;62572;62573;62574;62575	62567					0.03267182791569212
TYTDKLFKF	9	Unmodified	_TYTDKLFKF_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.8106079101562	2	581.810782	1161.60701	0.36462	0.00021214	0.3876	0.00022551	0.75221	0.00043765	581.8114241067782	53.281	2.1836	53.338	52.942	55.126	0.056255					240	81	5	0	0	0	2.973E-07	9	12510	12510;12553;12602;12650;12698;12747;12799;12849;12901		168.54	118.85	1	64390000			50995	1455	29055	29056	62576;62577;62578;62579;62580;62581;62582;62583;62584	62576					0.03267182791569212
TYTDKLFKF	9	Unmodified	_TYTDKLFKF_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.2666015625	2	581.810782	1161.60701	-0.25618	-0.00014905	-0.20954	-0.00012191	-0.46573	-0.00027096	581.8105514125916	60.292	0.34547	60.388	60.077	60.422	0.095093					16	12	2	0	0	0	0.21389	1	14679	14679		25.399	10.561	1	216490			50996	1455	29055	29056	62585	62585					0.03267182791569212
TYTDKLFKF	9	Unmodified	_TYTDKLFKF_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.8116455078125	2	581.810782	1161.60701	0.40986	0.00023846	0.45314	0.00026364	0.863	0.0005021	581.8115060647777	53.577	3.0048	53.567	53.192	56.196	-0.0096092					273	110	5	0	0	0	6.5985E-11	12	12772	12583;12634;12681;12721;12772;12815;12867;12917;12969;13026;13194;13414		181.69	131.76	1	65945000			50997	1455	29055	29056	62586;62587;62588;62589;62590;62591;62592;62593;62594;62595;62596;62597	62590					0.03267182791569212
TYTDLLSVI	9	Unmodified	_TYTDLLSVI_					0	0	0		ENST00000526447.1_1_11:67274830-67275269:-|nuORF;ENSG00000167797|ENST00000301488|CDK2AP2;ENST00000525402.5_1_11:67274418-67275269:-|nuORF	ENST00000526447.1_1_11:67274830-67275269:-|nuORF	ENST00000526447.1_1_11:67274830-67275269:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7817993164062	2	512.78169	1023.54883	0.51768	0.00026546	-0.29152	-0.00014949	0.22616	0.00011597	512.7814634228796	85.747	1.2646	85.747	85.282	86.546	0					114	49	4	0	0	0	0.0085732	1	22550	22550		81.613	0	1	1155400			50998	6212	29056	29057	62598	62598					0.0379950114629537
TYTDLLSVI	9	Unmodified	_TYTDLLSVI_					0	0	0		ENST00000526447.1_1_11:67274830-67275269:-|nuORF;ENSG00000167797|ENST00000301488|CDK2AP2;ENST00000525402.5_1_11:67274418-67275269:-|nuORF	ENST00000526447.1_1_11:67274830-67275269:-|nuORF	ENST00000526447.1_1_11:67274830-67275269:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.78173828125	2	512.78169	1023.54883	0.39967	0.00020494	-0.20575	-0.0001055	0.19392	9.9437E-05	512.7815086482377	85.599	1.2656	85.683	85.311	86.576	0.084251					117	48	4	0	0	0	0.015402	1	22506	22506		71.134	0	1	1090100			50999	6212	29056	29057	62599	62599					0.0379950114629537
TYTDLLSVI	9	Unmodified	_TYTDLLSVI_					0	0	0		ENST00000526447.1_1_11:67274830-67275269:-|nuORF;ENSG00000167797|ENST00000301488|CDK2AP2;ENST00000525402.5_1_11:67274418-67275269:-|nuORF	ENST00000526447.1_1_11:67274830-67275269:-|nuORF	ENST00000526447.1_1_11:67274830-67275269:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.78173828125	2	512.78169	1023.54883	0.41547	0.00021305	-0.20266	-0.00010392	0.21281	0.00010913	512.7815539850823	85.766	1.0062	85.757	85.38	86.386	-0.0090027					93	37	3	0	0	0	0.0037552	1	22537	22537		96.285	3.4626	1	981540			51000	6212	29056	29057	62600	62600					0.0379950114629537
TYTDRVFFL	9	Unmodified	_TYTDRVFFL_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.300537109375	2	581.300581	1160.58661	0.28661	0.00016661	-0.2164	-0.00012579	0.070214	4.0815E-05	581.300668562985	67.996	1.8947	67.996	67.561	69.455	0					254	68	6	0	0	0	5.7257E-07	9	17181	17039;17085;17133;17181;17230;17278;17333;17385;17466		157.8	108.24	1	28950000			51001	7882	29057	29058	62601;62602;62603;62604;62605;62606;62607;62608;62609	62604					0.012740121317847297
TYTDRVFFL	9	Unmodified	_TYTDRVFFL_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.3009643554688	2	581.300581	1160.58661	0.38073	0.00022132	-0.37329	-0.00021699	0.0074378	4.3236E-06	581.3005961283975	67.911	1.8955	67.989	67.576	69.471	0.078041					250	68	5	0	0	0	0.00019464	10	17048	17002;17048;17096;17141;17184;17233;17286;17329;17381;17488		133.05	85.458	1	28339000			51002	7882	29057	29058	62610;62611;62612;62613;62614;62615;62616;62617;62618;62619	62611					0.012740121317847297
TYTDRVFFL	9	Unmodified	_TYTDRVFFL_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.3009643554688	2	581.300581	1160.58661	0.32206	0.00018722	-0.32196	-0.00018716	0.00010247	5.9564E-08	581.3006491804466	68.012	1.8499	67.996	67.618	69.468	-0.016296					252	65	6	0	0	0	0.00019464	9	17086	17034;17086;17134;17186;17239;17282;17336;17384;17532		133.05	91.097	1	31526000			51003	7882	29057	29058	62620;62621;62622;62623;62624;62625;62626;62627;62628	62621					0.012740121317847297
TYTDVTPRQF	10	Unmodified	_TYTDVTPRQF_					0	0	0		ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.303955078125	2	614.303852	1226.59315	0.17527	0.00010767	0.45841	0.00028161	0.63368	0.00038927	614.3039900014597	43.836	1.1664	43.836	43.467	44.633	0					99	42	4	0	0	0	1.5636E-08	2	9676	9627;9676		184.36	144.41	1	3055100			51004	1238	29058	29059	62629;62630	62630					-0.011080947075242875
TYTDVTPRQF	10	Unmodified	_TYTDVTPRQF_					0	0	0		ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	614.3037719726562	2	614.303852	1226.59315	0.27055	0.0001662	0.12572	7.7231E-05	0.39627	0.00024343	614.3039060544463	43.626	1.1255	43.704	43.291	44.417	0.077518					93	41	3	0	0	0	3.6545E-09	1	9566	9566		200.32	148.69	1	3037300			51005	1238	29058	29059	62631	62631					-0.011080947075242875
TYTDVTPRQF	10	Unmodified	_TYTDVTPRQF_					0	0	0		ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	614.3041381835938	2	614.303852	1226.59315	0.31178	0.00019153	0.21436	0.00013168	0.52614	0.00032321	614.3039046856528	43.595	0.74892	43.679	43.327	44.075	0.083996					83	27	4	0	0	0	0.00035921	1	9547	9547		159.1	126.32	1	3283700			51006	1238	29058	29059	62632	62632					-0.011080947075242875
TYTEVVTEF	9	Unmodified	_TYTEVVTEF_					0	0	0		nc|ENSG00000106624|Q8IUX7-2|AEBP1;ENSG00000106624|ENST00000223357|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7611083984375	2	544.760955	1087.50736	0.47907	0.00026098	0.22205	0.00012096	0.70112	0.00038194	544.7609255598919	63.106	0.61122	63.106	62.832	63.443	0					53	22	3	0	0	0	0.14076	1	15602	15602		32.305	11.852	1	599000			51007	2090	29059	29060	62633	62633					-0.03289679613044427
TYTEVVTEF	9	Unmodified	_TYTEVVTEF_					0	0	0		nc|ENSG00000106624|Q8IUX7-2|AEBP1;ENSG00000106624|ENST00000223357|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7929077148438	2	544.760955	1087.50736	0.65795	0.00035843	0.2511	0.00013679	0.90905	0.00049522	544.7610575422456	62.937	0.71304	63.033	62.764	63.477	0.095722					55	25	3	0	0	0	0.1524	1	15530	15530		39.957	24.11	1	568450			51008	2090	29059	29060	62634	62634					-0.03289679613044427
TYTEVVTEF	9	Unmodified	_TYTEVVTEF_					0	0	0		nc|ENSG00000106624|Q8IUX7-2|AEBP1;ENSG00000106624|ENST00000223357|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7610473632812	2	544.760955	1087.50736	0.58751	0.00032005	0.069412	3.7813E-05	0.65693	0.00035787	544.7609152347017	63.058	0.67395	63.049	62.804	63.478	-0.0085526					49	24	3	0	0	0	0.14076	1	15578	15578		32.305	10.559	1	488490			51009	2090	29059	29060	62635	62635					-0.03289679613044427
TYTLRVFEL	9	Unmodified	_TYTLRVFEL_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.3161010742188	2	571.316232	1140.61791	0.060825	3.475E-05	-0.27888	-0.00015933	-0.21806	-0.00012458	571.3158077449972	69.492	1.0346	69.492	69.097	70.131	0					69	37	3	0	0	0	0.0040516	2	17551	17551;17602		93.938	59.536	1	955790			51010	1178	29060	29061	62636;62637	62636					0.053225851658453394
TYTLRVFEL	9	Unmodified	_TYTLRVFEL_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.31591796875	2	571.316232	1140.61791	0.24949	0.00014254	1.2502	0.00071425	1.4997	0.00085679	571.3175812508514	69.495	1.0369	69.561	69.123	70.16	0.066048					78	36	3	0	0	0	0.0048951	1	17548	17548		87.258	50.752	1	994090			51011	1178	29060	29061	62638	62638					0.053225851658453394
TYTLRVFEL	9	Unmodified	_TYTLRVFEL_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.31591796875	2	571.316232	1140.61791	0.15299	8.7408E-05	-0.25123	-0.00014353	-0.098235	-5.6123E-05	571.3155397224143	69.567	1.2185	69.544	69.059	70.277	-0.022087					92	43	3	0	0	0	0.003673	2	17565	17565;17613		96.936	62.534	1	865340			51012	1178	29060	29061	62639;62640	62639					0.053225851658453394
TYTMILNLL	9	Oxidation (M)	_TYTM(Oxidation (M))ILNLL_		TYTM(1)ILNLL		TYTM(89)ILNLL	0	0	1		ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2991333007812	2	549.299193	1096.58383	0.63688	0.00034984	-0.23602	-0.00012965	0.40086	0.00022019	549.2989804216329	86.112	1.2856	86.103	85.484	86.77	-0.0090103					108	48	3	0	0	0	0.004681	1	22542	22542		88.954	45.096	1	413240			51013	8219	29061	29062	62641	62641		889			0.03940420682579315
TYTMILNLL	9	Oxidation (M)	_TYTM(Oxidation (M))ILNLL_					0	0	1		ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	549.299193	1096.58383	0.58433	0.00032097	-0.25541	-0.0001403	0.32892	0.00018068	549.2989051421378	86.078	0.93342	86.162	85.888	86.821	0.084251	0.029496	-1.2328E-05	NaN	88.954	64	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417910			51014	8219	29061	29062				889			0.03940420682579315
TYTQDFNKF	9	Unmodified	_TYTQDFNKF_					0	0	0		nc|ENSG00000110680|P01258-2|CALCA;ENSG00000110680|ENST00000331587|CALCA	nc|ENSG00000110680|P01258-2|CALCA	nc|ENSG00000110680|P01258-2|CALCA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.2723388671875	2	582.272021	1162.52949	0.37471	0.00021818	-1.9773	-0.0011513	-1.6026	-0.00093315	582.2712213337383	53.032	0.49118	53.032	52.767	53.259	0					39	17	3	0	0	0	0.20344	1	12515	12515		23.148	9.5336	1	683030			51015	2321	29062	29063	62642	62642					-0.04527455144625492
TYTQDFNKF	9	Unmodified	_TYTQDFNKF_					0	0	0		nc|ENSG00000110680|P01258-2|CALCA;ENSG00000110680|ENST00000331587|CALCA	nc|ENSG00000110680|P01258-2|CALCA	nc|ENSG00000110680|P01258-2|CALCA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.2716064453125	2	582.272021	1162.52949	0.58873	0.0003428	-2.1807	-0.0012697	-1.5919	-0.00092695	582.2712502083971	52.986	0.42073	53.042	52.8	53.221	0.056255					24	14	2	0	0	0	0.155	1	12490	12490		30.225	12.09	1	578950			51016	2321	29062	29063	62643	62643					-0.04527455144625492
TYTRHGYIF	9	Unmodified	_TYTRHGYIF_					0	0	0		ENST00000474309.1_1_10:99204625-99205587:-|nuORF;ENST00000489158.1_1_10:99205437-99205742:-|nuORF;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENSG00000171311|ENST00000370902|EXOSC1	ENST00000474309.1_1_10:99204625-99205587:-|nuORF	ENST00000474309.1_1_10:99204625-99205587:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.2908325195312	2	579.290548	1156.56654	0.41466	0.00024021	-1.3762	-0.00079721	-0.96153	-0.00055701	579.2903557178397	37.239	0.5128	37.332	37.086	37.599	0.093014					34	18	3	0	0	0	0.14646	1	7617	7617		43.772	24.515	1	353870			51017	6535	29063	29064	62644	62644					-0.005477388081999379
TYTSNLVRL	9	Unmodified	_TYTSNLVRL_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7988891601562	2	533.798206	1065.58186	0.607	0.00032402	1.1689	0.00062397	1.7759	0.00094799	533.7987935102987	49.082	1.1553	49.082	48.798	49.953	0					100	41	4	0	0	0	2.4074E-11	2	11294	11247;11294		195.45	127.37	1	4569600			51018	2705	29064	29065	62645;62646	62646					0.051691279890064834
TYTSNLVRL	9	Unmodified	_TYTSNLVRL_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7879638671875	2	533.798206	1065.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.867	1	49.867	49.367	50.367	0								0	0	0	0.19932	1	11521	11521		22.736	8.8302	1				51019	2705	29064	29065	62647	62647					0.051691279890064834
TYTSNLVRL	9	Unmodified	_TYTSNLVRL_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7879638671875	2	533.798206	1065.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.833	1	49.878	49.378	50.378	0.044891								0	0	0	0.19932	1	11510	11510		22.736	9.2284	1				51020	2705	29064	29065	62648	62648					0.051691279890064834
TYTSNLVRL	9	Unmodified	_TYTSNLVRL_					0	0	0		ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF	ENSG00000116138|ENST00000375847|DNAJC16	ENSG00000116138|ENST00000375847|DNAJC16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7880859375	2	533.798206	1065.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.824	1	49.844	49.344	50.344	0.020691								0	0	0	0.19932	1	11499	11499		22.736	8.1546	1				51021	2705	29064	29065	62649	62649					0.051691279890064834
TYTSPPPQF	9	Unmodified	_TYTSPPPQF_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2852783203125	2	519.250557	1036.48656	0.51069	0.00026518	-0.76016	-0.00039471	-0.24947	-0.00012954	519.2503154223408	48.822	1.017	48.822	48.417	49.434	0					55	36	2	0	0	0	0.1939	1	11346	11346		30.637	14.789	1	305000			51022	2038	29065	29066	62650	62650					-0.03022225202039408
TYTSPPPQF	9	Unmodified	_TYTSPPPQF_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2850952148438	2	519.250557	1036.48656	0.4472	0.00023221	-0.68725	-0.00035685	-0.24005	-0.00012464	519.2502844478194	48.891	1.0967	48.936	48.47	49.566	0.044888					56	39	2	0	0	0	0.15943	1	11350	11350		39.95	24.103	1	379000			51023	2038	29065	29066	62651	62651					-0.03022225202039408
TYTSPPPQF	9	Unmodified	_TYTSPPPQF_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2852172851562	2	519.250557	1036.48656	0.26695	0.00013861	-0.2014	-0.00010458	0.065546	3.4035E-05	519.2503384380503	48.801	1.135	48.833	48.387	49.522	0.032043					62	40	2	0	0	0	0.15943	1	11305	11305		39.95	21.815	1	505180			51024	2038	29065	29066	62652	62652					-0.03022225202039408
TYTSYLDKF	9	Unmodified	_TYTSYLDKF_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.276611328125	2	569.276772	1136.53899	0.75084	0.00042744	-0.64651	-0.00036804	0.10433	5.9392E-05	569.2764021622082	55.821	0.67639	55.821	55.564	56.241	0					49	23	3	0	0	0	0.001957	2	13386	13334;13386		110.55	68.713	1	1243500			51025	913	29066	29067	62653;62654	62654					-0.023816868590984086
TYTSYLDKF	9	Unmodified	_TYTSYLDKF_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.27685546875	2	569.276772	1136.53899	0.7208	0.00041033	-0.55164	-0.00031403	0.16916	9.63E-05	569.2764798296831	55.734	0.68676	55.804	55.501	56.187	0.070885					58	24	3	0	0	0	0.0028032	2	13320	13320;13377		103.82	65.689	1	1373000			51026	913	29066	29067	62655;62656	62655					-0.023816868590984086
TYTSYLDKF	9	Unmodified	_TYTSYLDKF_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.2772827148438	2	569.276772	1136.53899	0.79835	0.00045448	-0.3669	-0.00020887	0.43145	0.00024561	569.2764676388138	56.187	0.70612	56.167	55.75	56.456	-0.019077					54	25	3	0	0	0	0.00047355	1	13429	13429		125.04	71.205	1	1354800			51027	913	29066	29067	62657	62657					-0.023816868590984086
TYTVNFGDF	9	Unmodified	_TYTVNFGDF_					0	0	0		nc|ENSG00000106624|Q8IUX7-2|AEBP1;ENSG00000106624|ENST00000223357|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	nc|ENSG00000106624|Q8IUX7-2|AEBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.768798828125	2	532.24019	1062.46583	0.61706	0.00032842	-1.2199	-0.00064926	-0.6028	-0.00032083	532.2393232191541	72.841	0.6492	72.811	72.304	72.954	-0.029305					29	22	2	0	0	0	0.23235	1	18552	18552		21.537	7.6309	1	169550			51028	2090	29067	29068	62658	62658					-0.06290815581701281
TYVAEPDDEI	10	Unmodified	_TYVAEPDDEI_					0	0	0			REV__nc|ENSG00000135333|Q15375-2|EPHA7	REV__nc|ENSG00000135333|Q15375-2|EPHA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7928466796875	2	576.258776	1150.503	0.3384	0.00019501	1.0097	0.00058184	1.3481	0.00077685	576.2593940444002	72.772	0.59926	72.772	72.534	73.133	0					43	21	3	0	0	0	0.30586	1	18664	18664		19.257	2.3147	1	241330	+		51029	15733	29068	29069	62659	62659					-0.06623188826620208
TYVDPNHFKL	10	Unmodified	_TYVDPNHFKL_					0	0	0			REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	617.3179321289062	2	617.316763	1232.61897	0.4053	0.0002502	-0.10044	-6.2006E-05	0.30486	0.00018819	617.3166811395776	55.698	0.4475	55.698	55.46	55.907	0					26	15	2	0	0	0	0.3001	1	13352	13352		20.415	3.8487	1	259610	+		51030	16081	29069	29070	62660	62660					0.011967995347504257
TYVDPNHFKL	10	Unmodified	_TYVDPNHFKL_					0	0	0			REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	617.316763	1232.61897	0.4053	0.0002502	-0.10044	-6.2006E-05	0.30486	0.00018819	617.3166811395776	55.698	0.4475	55.698	55.46	55.907	0	-0.039073	0.00037481	NaN	20.415	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259610	+		51031	16081	29069	29070							0.011967995347504257
TYVDPNHFKL	10	Unmodified	_TYVDPNHFKL_					0	0	0			REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	617.316763	1232.61897	0.3893	0.00024032	-0.41452	-0.00025589	-0.025222	-1.557E-05	617.3164325627494	55.574	0.45869	55.645	55.446	55.905	0.070885	-0.092382	-1.2959E-05	NaN	20.415	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378280	+		51032	16081	29069	29070							0.011967995347504257
TYVDPNHFKL	10	Unmodified	_TYVDPNHFKL_					0	0	0			REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	617.316763	1232.61897	0.59923	0.00036991	-0.4805	-0.00029662	0.11872	7.329E-05	617.3163673980404	55.887	0.51348	55.868	55.646	56.159	-0.019077	0.13146	-9.4426E-05	NaN	20.415	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487350	+		51033	16081	29069	29070							0.011967995347504257
TYVEHYPL	8	Unmodified	_TYVEHYPL_					0	0	0			REV__ENSG00000011028|ENST00000303375|MRC2	REV__ENSG00000011028|ENST00000303375|MRC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2542419433594	2	511.2531	1020.49165	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.85	1	116.82	116.32	117.32	-0.022781								0	0	0	0.37078	1	30259	30259		5.2307	0	1		+		51034	13423	29070	29071	62661	62661					-0.01777921339430577
TYVENLRLL	9	Unmodified	_TYVENLRLL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2|p.F1990Lfs*7|1|0.2|ENSG00000054654|chr14:64025137-64025137|T/-|frameshift_variant;SYNE2|p.Q817Kfs*12|1|0.39|ENSG00000054654|chr14:63990544-63990544|T/-|frameshift_variant	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.821533203125	2	560.821681	1119.62881	0.54134	0.0003036	-2.7689	-0.0015529	-2.2276	-0.0012493	560.8213368929842	60.809	2.2051	60.809	60.035	62.24	0					321	81	5	0	0	0	6.6756E-10	1	14833	14833		173.69	101.76	1	13214000			51035	692	29071	29072	62662	62662					0.07377987540144204
TYVENLRLL	9	Unmodified	_TYVENLRLL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2|p.F1990Lfs*7|1|0.2|ENSG00000054654|chr14:64025137-64025137|T/-|frameshift_variant;SYNE2|p.Q817Kfs*12|1|0.39|ENSG00000054654|chr14:63990544-63990544|T/-|frameshift_variant	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8212890625	2	560.821681	1119.62881	0.55905	0.00031353	-2.8966	-0.0016245	-2.3375	-0.0013109	560.8211169506212	60.725	2.3652	60.822	60.049	62.414	0.096985					342	86	5	0	0	0	6.6756E-10	1	14839	14839		187.3	105.41	1	14703000			51036	692	29071	29072	62663	62663					0.07377987540144204
TYVENLRLL	9	Unmodified	_TYVENLRLL_					0	0	0		nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000054654|ENST00000555002|SYNE2;SYNE2|p.F1990Lfs*7|1|0.2|ENSG00000054654|chr14:64025137-64025137|T/-|frameshift_variant;SYNE2|p.Q817Kfs*12|1|0.39|ENSG00000054654|chr14:63990544-63990544|T/-|frameshift_variant	nc|ENSG00000054654|Q8WXH0|SYNE2	nc|ENSG00000054654|Q8WXH0|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8212280273438	2	560.821681	1119.62881	0.51269	0.00028753	-3.0275	-0.0016979	-2.5148	-0.0014103	560.8211742486935	60.806	2.3528	60.797	59.999	62.352	-0.0094566					325	86	5	0	0	0	1.6536E-07	1	14865	14865		173.69	101.76	1	13659000			51037	692	29071	29072	62664	62664					0.07377987540144204
TYVEVWNDF	9	Unmodified	_TYVEVWNDF_					0	0	0		ENSG00000198858|ENST00000361574|R3HDM4	ENSG00000198858|ENST00000361574|R3HDM4	ENSG00000198858|ENST00000361574|R3HDM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.315185546875	2	586.766571	1171.51859	0.71806	0.00042134	0.56457	0.00033127	1.2826	0.00075261	587.2684141987264	77.723	0.48438	77.723	77.47	77.955	0					29	17	2	0	0	0	0.2524	1	20039	20039		7.609	1.8771	1	116030			51038	8144	29072	29073	62665	62665					-0.06030857518908306
TYVHQVERDD	10	Unmodified	_TYVHQVERDD_					0	0	0			REV__ENST00000544151.1_1_12:21807353-21810687:-|nuORF	REV__ENST00000544151.1_1_12:21807353-21810687:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.1983947753906	3	421.198436	1260.57348	0.26756	0.0001127	-0.0907	-3.8203E-05	0.17686	7.4494E-05	421.1984989429741	33.413	1.0476	33.479	33.128	34.176	0.06636					90	37	4	0	0	0	0.35637	1	6467	6467		7.0371	1.9896	1	535500	+		51039	22153	29073	29074	62666	62666					-0.04638470718282406
TYVHQVERDD	10	Unmodified	_TYVHQVERDD_					0	0	0			REV__ENST00000544151.1_1_12:21807353-21810687:-|nuORF	REV__ENST00000544151.1_1_12:21807353-21810687:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.1985168457031	3	421.198436	1260.57348	-0.10519	-4.4307E-05	0.44083	0.00018568	0.33564	0.00014137	421.1987021462051	33.359	1.4086	33.425	33.055	34.463	0.066704					97	50	4	0	0	0	0.37133	1	6456	6456		5.0475	0	1	484300	+		51040	22153	29073	29074	62667	62667					-0.04638470718282406
TYVKEIEVW	9	Unmodified	_TYVKEIEVW_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2875366210938	2	583.808239	1165.60193	0.29106	0.00016992	0.83809	0.00048928	1.1291	0.0006592	583.8092056416215	57.371	0.81314	57.456	57.184	57.997	0.085617					43	29	3	0	0	0	0.13946	1	13812	13812		47.732	29.586	1	1307300			51041	6752	29074	29075	62668	62668					0.025748789289536944
TYVNAMKNPP	10	Unmodified	_TYVNAMKNPP_					0	0	0			REV__ENSG00000103740|ENST00000258873|ACSBG1	REV__ENSG00000103740|ENST00000258873|ACSBG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2777709960938	2	567.784241	1133.55393	-0.14795	-8.4001E-05	-0.49894	-0.00028329	-0.64689	-0.00036729	567.7817328969293	112.36	8.4071	112.36	111.6	120	0					1906	1050	2	0	0	0	0.32054	1	29321	29321		3.2813	0.97858	1	74388	+		51042	14384	29075	29076	62669	62669					-0.0075051826272556355
TYVNAMKNPP	10	Unmodified	_TYVNAMKNPP_					0	0	0			REV__ENSG00000103740|ENST00000258873|ACSBG1	REV__ENSG00000103740|ENST00000258873|ACSBG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.7823486328125	2	567.784241	1133.55393	0.20436	0.00011603	0.60008	0.00034072	0.80444	0.00045675	568.2880176070058	111.65	8.6121	111.66	111.4	120.01	0.01152					2009	1062	2	0	0	0	0.38515	1	30138	30138		6.2058	2.2614	1	181370	+		51043	14384	29075	29076	62670	62670					-0.0075051826272556355
TYVNEVTEHS	10	Unmodified	_TYVNEVTEHS_					0	0	0		ENST00000591330.5_1_17:40855746-40879722:-|nuORF;ENST00000415827.6_2_17:40874925-40879722:-|nuORF;ENST00000428826.6_1_17:40874925-40879722:-|nuORF	ENST00000591330.5_1_17:40855746-40879722:-|nuORF	ENST00000591330.5_1_17:40855746-40879722:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.7706298828125	2	589.769842	1177.52513	0.45764	0.0002699	0.28712	0.00016933	0.74476	0.00043923	589.7700526956465	62.447	0.72298	62.447	62.084	62.807	0					58	26	3	0	0	0	0.28569	1	15433	15433		20.415	0	1	600570			51044	12180	29076	29077	62671	62671					-0.05652964358182544
TYVNEVTEHS	10	Unmodified	_TYVNEVTEHS_					0	0	0		ENST00000591330.5_1_17:40855746-40879722:-|nuORF;ENST00000415827.6_2_17:40874925-40879722:-|nuORF;ENST00000428826.6_1_17:40874925-40879722:-|nuORF	ENST00000591330.5_1_17:40855746-40879722:-|nuORF	ENST00000591330.5_1_17:40855746-40879722:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.7704467773438	2	589.769842	1177.52513	0.37989	0.00022405	0.31159	0.00018377	0.69148	0.00040782	589.770099120553	62.338	0.73705	62.435	62.089	62.826	0.096985					61	26	3	0	0	0	0.30978	1	15370	15370		19.362	4.7802	1	589930			51045	12180	29076	29077	62672	62672					-0.05652964358182544
TYVNEVTEHS	10	Unmodified	_TYVNEVTEHS_					0	0	0		ENST00000591330.5_1_17:40855746-40879722:-|nuORF;ENST00000415827.6_2_17:40874925-40879722:-|nuORF;ENST00000428826.6_1_17:40874925-40879722:-|nuORF	ENST00000591330.5_1_17:40855746-40879722:-|nuORF	ENST00000591330.5_1_17:40855746-40879722:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.7705078125	2	589.769842	1177.52513	0.42826	0.00025257	0.56259	0.0003318	0.99085	0.00058437	589.7701521564072	62.4	0.69118	62.392	62.04	62.731	-0.0085526					62	25	3	0	0	0	0.34053	1	15383	15383		14.405	0	1	573900			51046	12180	29076	29077	62673	62673					-0.05652964358182544
TYVPSLHQEL	10	Unmodified	_TYVPSLHQEL_					0	0	0		ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000491382.1_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8294067382812	2	593.808771	1185.60299	0.78392	0.0004655	2.9255	0.0017372	3.7094	0.0022027	593.8100972396353	77.593	0.32729	77.593	77.444	77.771	0					16	11	2	0	0	0	0.30872	1	20017	20017		19.362	0.10495	1	86985			51047	11178	29077	29078	62674	62674					0.017610932978868732
TYVPTVFEN	9	Unmodified	_TYVPTVFEN_					0	0	0		RND1|p.N189Hfs*7|1|0.05|ENSG00000172602|chr12:48858131-48858132|-/CATTATGTGA|frameshift_variant;ENSG00000172602|ENST00000309739|RND1	RND1|p.N189Hfs*7|1|0.05|ENSG00000172602|chr12:48858131-48858132|-/CATTATGTGA|frameshift_variant	RND1|p.N189Hfs*7|1|0.05|ENSG00000172602|chr12:48858131-48858132|-/CATTATGTGA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7714233398438	2	535.263665	1068.51278	0.33097	0.00017716	-0.44582	-0.00023863	-0.11484	-6.1472E-05	535.263206493427	42.945	0.40995	43.03	42.78	43.19	0.085197					19	14	2	0	0	0	0.13748	1	9384	9384		32.786	6.5175	1	224240			51048	6651	29078	29079	62675	62675					-0.018739560305675695
TYVPTVFEN	9	Unmodified	_TYVPTVFEN_					0	0	0		RND1|p.N189Hfs*7|1|0.05|ENSG00000172602|chr12:48858131-48858132|-/CATTATGTGA|frameshift_variant;ENSG00000172602|ENST00000309739|RND1	RND1|p.N189Hfs*7|1|0.05|ENSG00000172602|chr12:48858131-48858132|-/CATTATGTGA|frameshift_variant	RND1|p.N189Hfs*7|1|0.05|ENSG00000172602|chr12:48858131-48858132|-/CATTATGTGA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	535.263665	1068.51278	0.47229	0.0002528	-0.4286	-0.00022941	0.043697	2.3389E-05	535.2637376426535	43.309	0.2707	43.309	43.062	43.333	0	0.13963	1.143E-05	NaN	32.786	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175810			51049	6651	29078	29079							-0.018739560305675695
TYVRWYTQL	9	Unmodified	_TYVRWYTQL_					0	0	0		nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1;ENST00000482889.1_1_1:109472820-109486481:-|nuORF	nc|ENSG00000121940|Q96S66-2|CLCC1	nc|ENSG00000121940|Q96S66-2|CLCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	615.318359375	2	615.319306	1228.62406	-0.11944	-7.3492E-05	-0.92592	-0.00056974	-1.0454	-0.00064323	615.3186861254154	59.906	0.38544	59.906	59.65	60.035	0					27	13	3	0	0	0	0.014058	1	14624	14624		73.196	45.973	1	419640			51050	3023	29079	29080	62676	62676					0.018891033973659432
TYVRWYTQL	9	Unmodified	_TYVRWYTQL_					0	0	0		nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1;ENST00000482889.1_1_1:109472820-109486481:-|nuORF	nc|ENSG00000121940|Q96S66-2|CLCC1	nc|ENSG00000121940|Q96S66-2|CLCC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	615.319306	1228.62406	-0.23751	-0.00014615	-1.3541	-0.00083318	-1.5916	-0.00097932	615.3192315596019	59.722	0.47313	59.817	59.604	60.077	0.095093	-0.066049	-0.00039815	NaN	73.196	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331630			51051	3023	29079	29080							0.018891033973659432
TYVRWYTQL	9	Unmodified	_TYVRWYTQL_					0	0	0		nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1;ENST00000482889.1_1_1:109472820-109486481:-|nuORF	nc|ENSG00000121940|Q96S66-2|CLCC1	nc|ENSG00000121940|Q96S66-2|CLCC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	615.319306	1228.62406	0.11376	6.9998E-05	-0.86226	-0.00053056	-0.7485	-0.00046057	615.3189792297792	59.937	0.40222	59.926	59.683	60.085	-0.011486	0.042929	0.00020708	NaN	73.196	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	408220			51052	3023	29079	29080							0.018891033973659432
TYVSFNPALI	10	Unmodified	_TYVSFNPALI_					0	0	0			REV__L1ME4b_dup13373|chr10:89414050-89414243:+|1.3618504320252345|0.3959250418855294|1.78|540.0|8|3|sense	REV__L1ME4b_dup13373|chr10:89414050-89414243:+|1.3618504320252345|0.3959250418855294|1.78|540.0|8|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.7527465820312	2	562.802957	1123.59136	0.29319	0.00016501	-0.4076	-0.0002294	-0.1144	-6.4387E-05	562.8028935796142	70.17	0.30164	70.17	70.023	70.325	0					14	10	2	0	0	0	0.31629	1	17733	17733		10.074	0	1	75196	+		51053	22798	29080	29081	62677	62677					0.03450896274512161
TYVSFPLEL	9	Unmodified	_TYVSFPLEL_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7843627929688	2	534.784233	1067.55391	0.66961	0.00035809	-0.5672	-0.00030333	0.1024	5.4764E-05	534.783862566457	86.533	1.2486	86.533	86.149	87.398	0					152	51	5	0	0	0	5.6213E-07	2	22781	22735;22781		158.2	100.73	1	2861400			51054	3157	29081	29082	62678;62679	62679					0.02283805008892159
TYVSFPLEL	9	Unmodified	_TYVSFPLEL_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7843627929688	2	534.784233	1067.55391	0.39792	0.0002128	-0.42457	-0.00022706	-0.026658	-1.4256E-05	534.7839797882137	86.441	1.2947	86.525	86.053	87.347	0.084251					148	52	4	0	0	0	1.8535E-07	3	22727	22687;22727;22771		172.91	124.56	1	3049000			51055	3157	29081	29082	62680;62681;62682	62681					0.02283805008892159
TYVSFPLEL	9	Unmodified	_TYVSFPLEL_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7843627929688	2	534.784233	1067.55391	0.61397	0.00032834	-0.62001	-0.00033157	-0.0060412	-3.2307E-06	534.7838303825198	86.542	1.6919	86.533	86.08	87.772	-0.0090027					185	73	4	0	0	0	5.6213E-07	2	22720	22720;22769		158.2	116.11	1	2963700			51056	3157	29081	29082	62683;62684	62683					0.02283805008892159
TYVSGMLRF	9	Oxidation (M)	_TYVSGM(Oxidation (M))LRF_		TYVSGM(1)LRF		TYVSGM(160)LRF	0	0	1		ENST00000550385.1_1_12:102090725-102108674:+|nuORF;nc|ENSG00000111666|Q8WUD6-2|CHPT1;CHPT1|p.Q325Kfs*13|1|0.47|ENSG00000111666|chr12:101723753-101723753|T/-|frameshift_variant;ENSG00000111666|ENST00000229266|CHPT1	ENST00000550385.1_1_12:102090725-102108674:+|nuORF	ENST00000550385.1_1_12:102090725-102108674:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2737426757812	2	545.273509	1088.53247	0.4953	0.00027007	-0.07662	-4.1779E-05	0.41868	0.00022829	545.2732138581836	49.943	1.2185	49.943	49.6	50.818	0					138	44	5	0	0	0	5.7257E-07	4	11498	11498;11547;11607;11665		157.8	109.45	1	5270200			51057	108	29082	29083	62685;62686;62687;62688	62685		7			-0.008259032914338604
TYVSGMLRF	9	Oxidation (M)	_TYVSGM(Oxidation (M))LRF_		TYVSGM(1)LRF		TYVSGM(160)LRF	0	0	1		ENST00000550385.1_1_12:102090725-102108674:+|nuORF;nc|ENSG00000111666|Q8WUD6-2|CHPT1;CHPT1|p.Q325Kfs*13|1|0.47|ENSG00000111666|chr12:101723753-101723753|T/-|frameshift_variant;ENSG00000111666|ENST00000229266|CHPT1	ENST00000550385.1_1_12:102090725-102108674:+|nuORF	ENST00000550385.1_1_12:102090725-102108674:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2735595703125	2	545.273509	1088.53247	0.80514	0.00043902	-0.46747	-0.0002549	0.33766	0.00018412	545.2730575074199	49.911	1.25	49.956	49.621	50.871	0.044888					143	46	5	0	0	0	5.7257E-07	3	11534	11482;11534;11580		157.8	109.45	1	5664100			51058	108	29082	29083	62689;62690;62691	62690		7			-0.008259032914338604
TYVSGMLRF	9	Oxidation (M)	_TYVSGM(Oxidation (M))LRF_		TYVSGM(1)LRF		TYVSGM(160)LRF	0	0	1		ENST00000550385.1_1_12:102090725-102108674:+|nuORF;nc|ENSG00000111666|Q8WUD6-2|CHPT1;CHPT1|p.Q325Kfs*13|1|0.47|ENSG00000111666|chr12:101723753-101723753|T/-|frameshift_variant;ENSG00000111666|ENST00000229266|CHPT1	ENST00000550385.1_1_12:102090725-102108674:+|nuORF	ENST00000550385.1_1_12:102090725-102108674:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2736206054688	2	545.273509	1088.53247	0.82252	0.0004485	-0.54721	-0.00029838	0.27531	0.00015012	545.2730580435289	49.933	1.335	49.954	49.563	50.898	0.020691					154	49	5	0	0	0	5.7257E-07	4	11528	11479;11528;11575;11625		157.8	109.45	1	5318800			51059	108	29082	29083	62692;62693;62694;62695	62693		7			-0.008259032914338604
TYVSGTLRF	9	Unmodified	_TYVSGTLRF_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2802734375	2	522.279649	1042.54475	0.85795	0.00044809	-0.1929	-0.00010075	0.66505	0.00034734	522.2797088709502	50.535	1.5361	50.535	50.166	51.702	0					170	56	4	0	0	0	1.6536E-07	4	11728	11678;11728;11778;11939		173.69	108.45	1	21366000			51060	3767	29083	29084	62696;62697;62698;62699	62697					0.02517456443251831
TYVSGTLRF	9	Unmodified	_TYVSGTLRF_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2802734375	2	522.279649	1042.54475	0.97227	0.00050779	-0.34766	-0.00018158	0.6246	0.00032622	522.2796293142628	50.492	1.5384	50.537	50.185	51.723	0.044891					171	56	4	0	0	0	4.984E-07	4	11712	11670;11712;11761;11811		160.69	108.42	1	19754000			51061	3767	29083	29084	62700;62701;62702;62703	62701					0.02517456443251831
TYVSGTLRF	9	Unmodified	_TYVSGTLRF_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2802124023438	2	522.279649	1042.54475	0.99875	0.00052163	-0.39972	-0.00020877	0.59903	0.00031286	522.2796078341205	50.565	1.6439	50.585	50.226	51.87	0.020691					179	61	4	0	0	0	4.8913E-11	5	11723	11673;11723;11771;11820;11964		187.3	116.16	1	19247000			51062	3767	29083	29084	62704;62705;62706;62707;62708	62705					0.02517456443251831
TYVSWAIAYL	10	Unmodified	_TYVSWAIAYL_					0	0	0		ENST00000520709.5_1_8:92007907-92052988:-|nuORF;ENSG00000155099|ENST00000285419|PIP4P2	ENST00000520709.5_1_8:92007907-92052988:-|nuORF	ENST00000520709.5_1_8:92007907-92052988:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8290405273438	2	593.810782	1185.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.629	1	77.598	77.098	78.098	-0.031334								0	0	0	0.32028	1	20031	20031		25.399	0	1				51063	5160	29084	29085	62709	62709					0.02163182791559848
TYVTEVREL	9	Unmodified	_TYVTEVREL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2955322265625	2	555.295496	1108.57644	0.15088	8.3786E-05	3.0487	0.0016929	3.1996	0.0017767	555.7992868362905	46.241	0.75836	46.241	45.945	46.703	0					55	27	3	0	0	0	0.089483	1	10375	10375		59.368	24.967	1	1063200			51064	3288	29085	29086	62710	62710					0.026494044065202615
TYVTEVREL	9	Unmodified	_TYVTEVREL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8002319335938	2	555.295496	1108.57644	0.13924	7.7322E-05	3.5953	0.0019964	3.7345	0.0020738	555.7990282173796	46.039	0.88682	46.099	45.647	46.534	0.059834					66	31	4	0	0	0	0.12765	1	10375	10375		34.222	13.807	1	2018100			51065	3288	29085	29086	62711	62711					0.026494044065202615
TYVTEVREL	9	Unmodified	_TYVTEVREL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.80029296875	2	555.295496	1108.57644	0.45237	0.0002512	-0.19155	-0.00010637	0.26082	0.00014483	555.2952552696327	45.854	0.68285	45.919	45.57	46.253	0.065048					38	24	3	0	0	0	0.23216	1	10372	10372		17.443	5.202	1	916150			51066	3288	29085	29086	62712	62712					0.026494044065202615
TYVTILPEL	9	Unmodified	_TYVTILPEL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.8001708984375	2	524.799883	1047.58521	0.70469	0.00036982	-0.097579	-5.121E-05	0.60711	0.00031861	524.799748387595	82.816	1.4958	82.816	82.436	83.932	0					168	56	4	0	0	0	5.6213E-07	7	21661	21661;21709;21757;21819;21867;21905;21939		158.2	87.069	1	5464300			51067	2548	29086	29087	62713;62714;62715;62716;62717;62718;62719	62713					0.06332378042998243
TYVTILPEL	9	Unmodified	_TYVTILPEL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8001708984375	2	524.799883	1047.58521	0.57847	0.00030358	0.13212	6.9337E-05	0.71059	0.00037292	524.799866602153	82.752	1.4421	82.826	82.452	83.894	0.073097					176	56	4	0	0	0	5.6213E-07	6	21630	21630;21679;21728;21778;21829;21882		158.2	87.069	1	4939300			51068	2548	29086	29087	62720;62721;62722;62723;62724;62725	62720					0.06332378042998243
TYVTILPEL	9	Unmodified	_TYVTILPEL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF;nc|ENSG00000114127|Q8IZH2-3|XRN1	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8001098632812	2	524.799883	1047.58521	0.65819	0.00034542	-0.0092978	-4.8795E-06	0.64889	0.00034054	524.7998070500831	82.887	1.4423	82.866	82.45	83.892	-0.020584					174	59	4	0	0	0	7.827E-05	7	21651	21651;21701;21749;21809;21859;21910;21937		144.35	73.217	1	4866300			51069	2548	29086	29087	62726;62727;62728;62729;62730;62731;62732	62726					0.06332378042998243
TYVTLPLHRI	10	Unmodified	_TYVTLPLHRI_					0	0	0		ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930;ENST00000483374.1_1_22:45593059-45593908:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.1925048828125	3	404.908157	1211.70264	-0.079416	-3.2156E-05	-0.7837	-0.00031733	-0.86312	-0.00034948	404.9077540320192	50.018	0.34716	50.018	49.894	50.241	0					16	12	2	0	0	0	0.28108	1	11586	11586		15.538	8.915	1	240180			51070	1581	29087	29088	62733	62733					0.10525955702473766
TYVTLPLHRI	10	Unmodified	_TYVTLPLHRI_					0	0	0		ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930;ENST00000483374.1_1_22:45593059-45593908:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.1925354003906	3	404.908157	1211.70264	0.16609	6.7253E-05	0.30477	0.0001234	0.47086	0.00019066	404.9079222039155	50.083	0.41749	50.128	49.85	50.268	0.044891					25	15	3	0	0	0	0.30555	1	11598	11598		22.775	13.799	1	154090			51071	1581	29087	29088	62734	62734					0.10525955702473766
TYVTLPLHRI	10	Unmodified	_TYVTLPLHRI_					0	0	0		ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930;ENST00000483374.1_1_22:45593059-45593908:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.1925048828125	3	404.908157	1211.70264	0.15898	6.4372E-05	-0.63069	-0.00025537	-0.47171	-0.000191	404.9077903544022	49.979	0.40189	49.999	49.85	50.252	0.020691					17	14	2	0	0	0	0.29613	1	11578	11578		12.228	6.0357	1	157880			51072	1581	29087	29088	62735	62735					0.10525955702473766
TYVWEFDSR	9	Unmodified	_TYVWEFDSR_					0	0	0			REV__ENSG00000168350|ENST00000305631|DEGS2	REV__ENSG00000168350|ENST00000305631|DEGS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3067626953125	2	601.77747	1201.54039	0.79911	0.00048089	-0.013576	-8.1698E-06	0.78554	0.00047272	601.778023574841	56.635	0.78889	56.616	56.326	57.115	-0.019077					38	28	2	0	0	0	0.25622	1	13536	13536		7.2892	0	1	456960	+		51073	17452	29088	29089	62736	62736					-0.05232052770338669
TYVWEFDSR	9	Unmodified	_TYVWEFDSR_					0	0	0			REV__ENSG00000168350|ENST00000305631|DEGS2	REV__ENSG00000168350|ENST00000305631|DEGS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	601.77747	1201.54039	0.74731	0.00044971	-0.28437	-0.00017113	0.46293	0.00027858	601.7782411601279	56.49	0.99305	56.569	56.437	57.43	0.078671	-0.050029	-0.00053733	NaN	7.2892	59	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395900	+		51074	17452	29088	29089							-0.05232052770338669
TYVWHATER	9	Unmodified	_TYVWHATER_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.7843627929688	2	581.78563	1161.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.897	1	59.885	59.385	60.385	-0.011486								0	0	0	0.19932	1	14606	14606		22.736	0	1				51075	8114	29089	29090	62737	62737					-0.017609268135629463
TYVWWSRH	8	Unmodified	_TYVWWSRH_					0	0	0			REV__nc|ENSG00000186153|Q9NZC7-2|WWOX	REV__nc|ENSG00000186153|Q9NZC7-2|WWOX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.290771484375	2	567.777608	1133.54066	0.15492	8.7962E-05	2.5751	0.0014621	2.73	0.00155	567.7817353751643	80.832	0.98239	80.897	80.52	81.503	0.065102					67	45	3	0	0	0	0.34131	1	20922	20922		12.532	3.7861	1	275480	+		51076	18432	29090	29091	62738	62738					-0.020765882598198004
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.27734375	2	575.276772	1148.53899	0.24721	0.00014222	0.1963	0.00011293	0.44352	0.00025514	575.2769438433975	70.65	2.6947	70.65	70.24	72.935	0					203	95	5	0	0	0	9.0795E-24	6	17861	17861;17908;17958;18010;18061;18112		232.37	232.37	1	10687000			51077	3012	29091	29092	62739;62740;62741;62742;62743;62744	62739					-0.02933686859091722
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7926635742188	2	575.276772	1148.53899	0.039013	2.2443E-05	0.99821	0.00057424	1.0372	0.00059669	575.2770215203385	73.519	0.26878	73.519	73.363	73.632	0					11	9	2	0	0	0	0.1645	1	18815	18815		40.239	24.09	1	53722			51078	3012	29091	29092	62745	62745					-0.02933686859091722
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.2769775390625	2	575.276772	1148.53899	0.36293	0.00020878	0.061412	3.5329E-05	0.42434	0.00024411	575.2768864027936	70.613	2.6883	70.674	70.299	72.987	0.060783					201	97	5	0	0	0	9.0795E-24	6	17882	17837;17882;17926;17966;18014;18066		232.37	232.37	1	11682000			51079	3012	29091	29092	62746;62747;62748;62749;62750;62751	62747					-0.02933686859091722
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7922973632812	2	575.276772	1148.53899	0.24061	0.00013842	-1.4737	-0.00084781	-1.2331	-0.0007094	575.2774243656665	73.169	0.49078	73.223	72.981	73.471	0.053841					44	17	4	0	0	0	0.032589	3	18749	18645;18698;18749		59.368	27.063	1	95972			51080	3012	29091	29092	62752;62753;62754	62754					-0.02933686859091722
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.2769165039062	2	575.276772	1148.53899	0.32164	0.00018503	0.13753	7.9119E-05	0.45917	0.00026415	575.2769006108081	70.691	2.9126	70.666	70.301	73.213	-0.024872					213	104	5	0	0	0	3.5809E-25	6	17965	17864;17913;17965;18016;18078;18123		249.11	249.11	1	10158000			51081	3012	29091	29092	62755;62756;62757;62758;62759;62760	62757					-0.02933686859091722
TYWAVSEEL	9	Unmodified	_TYWAVSEEL_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;ENST00000602190.1_1_19:50164877-50165571:-|nuORF;nc|ENSG00000126456|Q14653-4|IRF3	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.234130859375	2	549.261122	1096.50769	0.43915	0.00024121	2.2459	0.0012336	2.6851	0.0014748	549.262389389643	62.229	0.82861	62.229	61.86	62.689	0					45	30	2	0	0	0	0.20651	1	15251	15251		26.884	9.7708	1	196530			51082	3272	29092	29093	62761	62761					-0.03670259893192451
TYWAVSEEL	9	Unmodified	_TYWAVSEEL_					0	0	0		ENSG00000126456|ENST00000377139|IRF3;ENST00000602190.1_1_19:50164877-50165571:-|nuORF;nc|ENSG00000126456|Q14653-4|IRF3	ENSG00000126456|ENST00000377139|IRF3	ENSG00000126456|ENST00000377139|IRF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2341918945312	2	549.261122	1096.50769	0.41678	0.00022892	2.3412	0.0012859	2.758	0.0015148	549.2622257454937	62.169	0.82186	62.266	61.867	62.689	0.096985					39	29	2	0	0	0	0.20651	1	15247	15247		26.884	12.045	1	179320			51083	3272	29092	29093	62762	62762					-0.03670259893192451
TYWYHKVH	8	Unmodified	_TYWYHKVH_					0	0	0			REV__nc|ENSG00000153233|Q15256-3|PTPRR	REV__nc|ENSG00000153233|Q15256-3|PTPRR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2789916992188	2	567.279983	1132.54541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.57	1	112.57	112.07	113.07	0								0	0	0	0.36336	1	29255	29255		8.5933	1.304	1		+		51084	16616	29093	29094	62763	62763					-0.015557041170495722
TYYAVDALAF	10	Unmodified	_TYYAVDALAF_					0	0	0			REV__nc|ENSG00000099331|Q13459-2|MYO9B	REV__nc|ENSG00000099331|Q13459-2|MYO9B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2798461914062	2	567.279315	1132.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.01	1	118.03	117.53	118.53	0.023476								0	0	0	0.37044	1	30570	30570		6.2058	0.47393	1		+		51085	14129	29094	29095	62764	62764					-0.01689382996482891
TYYLYRAW	8	Unmodified	_TYYLYRAW_					0	0	0			REV__ENSG00000108344|ENST00000264639|PSMD3	REV__ENSG00000108344|ENST00000264639|PSMD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8468627929688	2	568.282192	1134.54983	0.48522	0.00027574	3.6139	0.0020537	4.0991	0.0023294	568.2850253950284	69.07	0.40733	69.142	68.83	69.237	0.071938					20	14	2	0	0	0	0.33993	1	17423	17423		16.942	1.0951	1	158980	+		51086	14587	29095	29096	62765	62765					-0.012062396941701081
TYYNPAQQQ	9	Unmodified	_TYYNPAQQQ_					0	0	0		ENSG00000108349|ENST00000264645|CASC3;ENST00000394114.2_1_17:38325525-38325871:+|nuORF	ENSG00000108349|ENST00000264645|CASC3	ENSG00000108349|ENST00000264645|CASC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2767333984375	2	556.753995	1111.49344	0.3982	0.0002217	0.30649	0.00017064	0.70469	0.00039234	556.7522747359487	75.463	0.21601	75.432	75.342	75.558	-0.031487					11	7	2	0	0	0	0.25323	1	19363	19363		10.074	1.3285	1	82445			51087	2177	29096	29097	62766	62766					-0.05784912321473712
TYYYNNRTL	9	Unmodified	_TYYYNNRTL_					0	0	0		nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1;ENST00000507175.5_1_5:145826912-145859658:+|nuORF;ENST00000513298.5_1_5:145838810-145849312:+|nuORF	nc|ENSG00000113649|O14776-2|TCERG1	nc|ENSG00000113649|O14776-2|TCERG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.1961975097656	3	403.196256	1206.56694	-0.19397	-7.8209E-05	-0.45613	-0.00018391	-0.6501	-0.00026212	403.1964825295804	24.628	0.57381	24.572	24.315	24.888	-0.055931					48	19	4	0	0	0	0.25526	1	3814	3814		4.897	0.18109	1	166260			51088	2521	29097	29098	62767	62767					-0.028083638790121768
VAAAAIPVVSF	11	Unmodified	_VAAAAIPVVSF_					0	0	0			REV__CON__P01030	REV__CON__P01030	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3056640625	2	522.808042	1043.60153	0.58386	0.00030525	1.3719	0.00071721	1.9557	0.0010225	522.8093492822801	65.664	0.88072	65.653	65.372	66.253	-0.011337					58	31	3	0	0	0	0.20276	1	16518	16518		41.84	20.303	1	1145100	+	+	51089	13243	29098	29099	62768	62768					0.08147503999748551
VAAAPKGKEK	10	Unmodified	_VAAAPKGKEK_					0	0	0		nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2	nc|ENSG00000143322|P42684-4|ABL2	nc|ENSG00000143322|P42684-4|ABL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.8037414550781	2	499.803291	997.59203	0.64177	0.00032076	0.60617	0.00030296	1.2479	0.00062372	499.8033551724339	20.489	0.68801	20.436	20.229	20.917	-0.05291					38	24	2	0	0	0	0.38515	1	2625	2625		6.2058	1.8765	1	205650			51090	4500	29099	29100	62769	62769					0.09313735714238192
VAAARRRP	8	Unmodified	_VAAARRRP_					0	0	0		ENST00000533444.1_1_8:145149952-145150036:+|nuORF	ENST00000533444.1_1_8:145149952-145150036:+|nuORF	ENST00000533444.1_1_8:145149952-145150036:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.7509765625	2	448.780485	895.546417	0.33111	0.0001486	0.72295	0.00032445	1.0541	0.00047304	448.78074493318087	21.119	1.0356	21.119	20.395	21.431	0					81	35	4	0	0	0	0.34319	1	2599	2599		5.7604	0	1	254060			51091	11649	29100	29101	62770	62770					0.09446555042518412
VAADAVASLLI	11	Unmodified	_VAADAVASLLI_					0	0	0		nc|ENSG00000126264|Q9UBK5-2|HCST;ENSG00000126264|ENST00000246551|HCST	nc|ENSG00000126264|Q9UBK5-2|HCST	nc|ENSG00000126264|Q9UBK5-2|HCST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.81103515625	2	521.810782	1041.60701	0.57505	0.00030007	-0.069986	-3.6519E-05	0.50506	0.00026355	521.8107063582452	82.494	0.61208	82.494	82.262	82.874	0					53	22	3	0	0	0	0.0084424	2	21523	21523;21580		72.968	25.219	1	406760			51092	3266	29101	29102	62771;62772	62771					0.08787182791570558
VAADAVASLLI	11	Unmodified	_VAADAVASLLI_					0	0	0		nc|ENSG00000126264|Q9UBK5-2|HCST;ENSG00000126264|ENST00000246551|HCST	nc|ENSG00000126264|Q9UBK5-2|HCST	nc|ENSG00000126264|Q9UBK5-2|HCST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.81103515625	2	521.810782	1041.60701	0.4062	0.00021196	0.080206	4.1852E-05	0.48641	0.00025381	521.8107474077824	82.396	0.58289	82.47	82.24	82.823	0.073097					50	23	3	0	0	0	0.0084424	2	21521	21473;21521		72.968	24.632	1	418340			51093	3266	29101	29102	62773;62774	62774					0.08787182791570558
VAADAVASLLI	11	Unmodified	_VAADAVASLLI_					0	0	0		nc|ENSG00000126264|Q9UBK5-2|HCST;ENSG00000126264|ENST00000246551|HCST	nc|ENSG00000126264|Q9UBK5-2|HCST	nc|ENSG00000126264|Q9UBK5-2|HCST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.8112182617188	2	521.810782	1041.60701	0.51983	0.00027125	-0.048897	-2.5515E-05	0.47093	0.00024574	521.8106238945709	82.525	0.53992	82.504	82.278	82.818	-0.020584					46	21	3	0	0	0	0.00531	2	21532	21532;21585		79.596	39.357	1	412380			51094	3266	29101	29102	62775;62776	62775					0.08787182791570558
VAAEKSFNK	9	Unmodified	_VAAEKSFNK_					0	0	0		ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2716979980469	2	497.271824	992.529095	0.091113	4.5308E-05	-0.25382	-0.00012622	-0.16271	-8.091E-05	497.2716545143685	14.698	0.50231	14.698	14.478	14.981	0					42	17	4	0	0	0	0.035405	1	811	811		79.596	24.823	1	274840			51095	1283	29102	29103	62777	62777					0.03253169926188093
VAAEKSFNK	9	Unmodified	_VAAEKSFNK_					0	0	0		ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.2716369628906	2	497.271824	992.529095	0.13711	6.818E-05	-0.27066	-0.00013459	-0.13355	-6.6411E-05	497.2716991480972	14.834	0.50569	14.724	14.449	14.955	-0.10981					39	17	4	0	0	0	0.0037772	1	852	852		96.111	33.538	1	340500			51096	1283	29102	29103	62778	62778					0.03253169926188093
VAAEKSFNK	9	Unmodified	_VAAEKSFNK_					0	0	0		ENST00000520132.1_1_5:150071315-150073858:-|nuORF;nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	ENST00000520132.1_1_5:150071315-150073858:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2716369628906	2	497.271824	992.529095	0.044702	2.2229E-05	-0.17171	-8.5384E-05	-0.127	-6.3155E-05	497.2716952526034	14.879	0.50199	14.815	14.511	15.013	-0.064413					38	17	3	0	0	0	0.0073901	1	859	859		83.429	35.834	1	324820			51097	1283	29102	29103	62779	62779					0.03253169926188093
VAAELKSN	8	Unmodified	_VAAELKSN_					0	0	0			REV__nc|ENSG00000290966|A6NCN2|KRT87P	REV__nc|ENSG00000290966|A6NCN2|KRT87P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.2325439453125	2	416.232168	830.449782	-0.11231	-4.6748E-05	-0.58625	-0.00024402	-0.69856	-0.00029077	416.2323621141716	14.989	0.39766	14.924	14.76	15.158	-0.064413					21	13	3	0	0	0	0.40115	1	902	902		19.257	2.1441	1	85232	+	+	51098	13248	29103	29104	62780	62780					0.027775229720418793
VAAEPPPSTV	10	Unmodified	_VAAEPPPSTV_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENST00000493587.1_1_8:100883622-100887891:+|nuORF	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.8324279785156	2	484.258382	966.502212	0.11645	5.6394E-05	-0.23294	-0.0001128	-0.11648	-5.6408E-05	484.25814646139185	39.409	0.49915	39.502	39.251	39.75	0.09267					30	17	2	0	0	0	0.2504	1	8277	8277		20.454	0	1	332310			51099	3647	29104	29105	62781	62781					0.017620613150029385
VAAFQREL	8	Unmodified	_VAAFQREL_					0	0	0		ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.5736083984375	2	467.261259	932.507966	-0.035576	-1.6623E-05	-2.2675	-0.0010595	-2.3031	-0.0010761	467.2577674968477	19.399	0.37214	19.283	19.116	19.488	-0.11592					15	12	2	0	0	0	0.32886	1	2232	2232		21.747	2.4897	1	33191			51100	2594	29105	29106	62782	62782					0.03901204617318399
VAAHPLPGL	9	Unmodified	_VAAHPLPGL_					0	0	0			REV__ENST00000477241.1_1_2:239037864-239040370:+|nuORF	REV__ENST00000477241.1_1_2:239037864-239040370:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.7734069824219	2	437.760895	873.507237	-0.23406	-0.00010246	0.13433	5.8804E-05	-0.099727	-4.3657E-05	437.7608068472349	61.446	0.62487	61.437	61.22	61.845	-0.0094566					50	22	3	0	0	0	0.11279	1	15052	15052		45.75	0	1	637330	+		51101	16239	29106	29107	62783	62783					0.06542409968267293
VAAILQGVYK	10	Unmodified	_VAAILQGVYK_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2925415039062	2	531.321317	1060.62808	0.58909	0.00031299	-0.038266	-2.0332E-05	0.55082	0.00029266	531.321443074838	48.804	0.52844	48.804	48.606	49.135	0					41	18	3	0	0	0	0.081544	1	11182	11182		75.761	51.74	1	857630			51102	2358	29107	29108	62784	62784					0.1001919289108173
VAAILQGVYK	10	Unmodified	_VAAILQGVYK_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2930297851562	2	531.321317	1060.62808	0.47863	0.00025431	0.284	0.0001509	0.76264	0.0004052	531.3217188361621	48.865	0.63281	48.909	48.66	49.293	0.044891					39	22	2	0	0	0	0.010072	1	11210	11210		82.529	63.272	1	1065300			51103	2358	29107	29108	62785	62785					0.1001919289108173
VAAILQGVYK	10	Unmodified	_VAAILQGVYK_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2930908203125	2	531.321317	1060.62808	0.42065	0.0002235	0.50951	0.00027071	0.93016	0.00049421	531.3215885223258	48.838	0.51857	48.87	48.602	49.121	0.032043					37	18	3	0	0	0	0.018176	1	11182	11182		69.105	45.084	1	937960			51104	2358	29107	29108	62786	62786					0.1001919289108173
VAAIRTLL	8	Unmodified	_VAAIRTLL_					0	0	0		ENST00000543940.1_1_12:124114818-124118191:-|nuORF;ENST00000452159.6_1_12:124114706-124118224:-|nuORF;nc|ENSG00000111361|Q14232-2|EIF2B1;ENSG00000111361|ENST00000424014|EIF2B1	ENST00000543940.1_1_12:124114818-124118191:-|nuORF	ENST00000543940.1_1_12:124114818-124118191:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.23773193359375	2	428.78437	855.554188	-0.18045	-7.7374E-05	0.68697	0.00029456	0.50652	0.00021719	428.7845636534775	22.395	0.59826	22.294	22.074	22.672	-0.10034					34	21	2	0	0	0	0.34297	1	3081	3081		6.3541	0	1	95181			51105	11747	29108	29109	62787	62787					0.12063269519433106
VAAIRTLL	8	Unmodified	_VAAIRTLL_					0	0	0		ENST00000543940.1_1_12:124114818-124118191:-|nuORF;ENST00000452159.6_1_12:124114706-124118224:-|nuORF;nc|ENSG00000111361|Q14232-2|EIF2B1;ENSG00000111361|ENST00000424014|EIF2B1	ENST00000543940.1_1_12:124114818-124118191:-|nuORF	ENST00000543940.1_1_12:124114818-124118191:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	428.78437	855.554188	-0.20347	-8.7245E-05	0.66738	0.00028616	0.46391	0.00019892	428.7845787632102	22.24	0.48727	22.24	22.076	22.563	0	-0.030618	-1.54E-06	NaN	6.3541	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73801			51106	11747	29108	29109							0.12063269519433106
VAAIRTLL	8	Unmodified	_VAAIRTLL_					0	0	0		ENST00000543940.1_1_12:124114818-124118191:-|nuORF;ENST00000452159.6_1_12:124114706-124118224:-|nuORF;nc|ENSG00000111361|Q14232-2|EIF2B1;ENSG00000111361|ENST00000424014|EIF2B1	ENST00000543940.1_1_12:124114818-124118191:-|nuORF	ENST00000543940.1_1_12:124114818-124118191:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	428.78437	855.554188	-0.26461	-0.00011346	0.65591	0.00028124	0.3913	0.00016778	428.7845767493986	22.328	0.52315	22.278	22.151	22.674	-0.049377	0.0073748	-1.1378E-05	NaN	6.3541	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92966			51107	11747	29108	29109							0.12063269519433106
VAAIVLASSI	10	Unmodified	_VAAIVLASSI_					0	0	0			REV__ENST00000574801.5_1_17:80822167-80863832:+|nuORF	REV__ENST00000574801.5_1_17:80822167-80863832:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7019958496094	2	472.294768	942.574983	0.54673	0.00025822	-0.70854	-0.00033464	-0.16181	-7.6422E-05	472.294253216621	50.762	0.37822	50.762	50.518	50.896	0					17	13	2	0	0	0	0.25875	1	11820	11820		13.906	0	1	144420	+		51108	16083	29109	29110	62788	62788					0.10139815108414041
VAAIVLASSI	10	Unmodified	_VAAIVLASSI_					0	0	0			REV__ENST00000574801.5_1_17:80822167-80863832:+|nuORF	REV__ENST00000574801.5_1_17:80822167-80863832:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.701904296875	2	472.294768	942.574983	0.60108	0.00028389	-0.77923	-0.00036802	-0.17814	-8.4135E-05	472.2943694408822	50.713	0.35379	50.758	50.602	50.956	0.045273					19	12	2	0	0	0	0.26638	1	11794	11794		24.021	0	1	175160	+		51109	16083	29109	29110	62789	62789					0.10139815108414041
VAAKITATI	9	Unmodified	_VAAKITATI_					0	0	0		ENSG00000012983|ENST00000682126|MAP4K5	ENSG00000012983|ENST00000682126|MAP4K5	ENSG00000012983|ENST00000682126|MAP4K5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	444.2386474609375	2	444.28166	886.548768	0.23714	0.00010536	-0.23899	-0.00010618	-0.001853	-8.2325E-07	444.2814341611842	38.136	0.61978	38.136	37.926	38.546	0					42	21	3	0	0	0	0.16853	1	7884	7884		38.176	11.292	1	444930			51110	458	29110	29111	62790	62790					0.10095545936940198
VAAKITATI	9	Unmodified	_VAAKITATI_					0	0	0		ENSG00000012983|ENST00000682126|MAP4K5	ENSG00000012983|ENST00000682126|MAP4K5	ENSG00000012983|ENST00000682126|MAP4K5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	444.2386779785156	2	444.28166	886.548768	0.22731	0.00010099	-0.24505	-0.00010887	-0.017738	-7.8807E-06	444.28144025741426	38.055	0.52435	38.146	37.959	38.483	0.090881					46	18	3	0	0	0	0.24471	1	7854	7854		17.113	2.2746	1	478700			51111	458	29110	29111	62791	62791					0.10095545936940198
VAAKRLLFRE	10	Unmodified	_VAAKRLLFRE_					0	0	0		nc|ENSG00000197321|O95425-2|SVIL;SVIL|p.L2113Dfs*17|1|0.07|ENSG00000197321|chr10:29462341-29462342|AG/-|frameshift_variant;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-2|SVIL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.340576171875	2	601.87204	1201.72953	0.52854	0.00031812	-0.72197	-0.00043453	-0.19343	-0.00011642	601.8716046781813	51.199	0.38218	51.209	50.991	51.373	0.0095634					16	14	2	0	0	0	0.31847	1	11903	11903		6.7232	0.51738	1	173090			51112	7952	29111	29112	62792	62792					0.1367306431363886
VAAKYGKL	8	Unmodified	_VAAKYGKL_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.V1315Cfs*8|1|0.35|ENSG00000151150|chr10:60084733-60084734|-/A|frameshift_variant;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;ANK3|p.E1076Afs*7|1|0.3|ENSG00000151150|chr10:60106005-60106006|TT/-|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.7525329589844	2	425.263271	848.511988	-0.093615	-3.9811E-05	-0.20825	-8.8563E-05	-0.30187	-0.00012837	425.26331416910784	59.003	1.7593	59.003	58.654	60.413	0					186	62	6	0	0	0	0.4419	1	14300	14300		8.5933	2.8329	1	9301000			51113	4941	29112	29113	62793	62793					0.08167294111046886
VAALFDRRGPL	11	Unmodified	_VAALFDRRGPL_					0	0	0			REV__ENST00000468960.2_1_7:98630555-98645380:+|nuORF	REV__ENST00000468960.2_1_7:98630555-98645380:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5717468261719	3	405.571657	1213.69314	0.027848	1.1294E-05	0.021099	8.5573E-06	0.048947	1.9852E-05	405.57164948632345	32.686	1.0467	32.742	32.182	33.228	0.055309					97	37	3	0	0	0	0.40256	1	6330	6330		10.899	3.0529	1	1220300	+		51114	20271	29113	29114	62794	62794					0.09484187416956047
VAALIFQL	8	Unmodified	_VAALIFQL_					0	0	0			REV__nc|ENSG00000137100|O75935-3|DCTN3	REV__nc|ENSG00000137100|O75935-3|DCTN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.7609558105469	2	437.773471	873.53239	-0.14665	-6.42E-05	0.051585	2.2583E-05	-0.095067	-4.1618E-05	437.77336349107884	61.16	0.5268	61.257	61.065	61.592	0.096985					31	19	3	0	0	0	0.421	1	15064	15064		15.768	0	1	689790	+		51115	23004	29114	29115	62795	62795					0.09056464770844741
VAALMARRKSE	11	Unmodified	_VAALMARRKSE_					0	0	0			REV__nc|ENSG00000142733|O95382-2|MAP3K6	REV__nc|ENSG00000142733|O95382-2|MAP3K6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2364807128906	3	411.236168	1230.68668	-0.28959	-0.00011909	0.54358	0.00022354	0.25399	0.00010445	411.23641712436205	12.813	0.52164	12.746	12.64	13.162	-0.067496					34	17	3	0	0	0	0.41411	1	244	244		4.7159	0	1	190540	+		51116	16135	29115	29116	62796	62796					0.08055926193924279
VAALQRAKQDL	11	Unmodified	_VAALQRAKQDL_					0	0	0		ENST00000556193.2_1_14:44010398-44010665:-|nuORF	ENST00000556193.2_1_14:44010398-44010665:-|nuORF	ENST00000556193.2_1_14:44010398-44010665:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8568725585938	2	606.856586	1211.69862	0.20815	0.00012632	0.54318	0.00032963	0.75132	0.00045595	606.8568419371256	16.176	0.40719	16.113	15.943	16.351	-0.062534					28	13	3	0	0	0	0.45367	1	1262	1262		4.1895	0	1	57924			51117	11853	29116	29117	62797	62797					0.10123866208755317
VAAPKVVE	8	Unmodified	_VAAPKVVE_					0	0	0			REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.78515625	2	406.747453	811.480354	-0.15752	-6.4072E-05	0.47268	0.00019226	0.31516	0.00012819	406.7475136942473	26.389	0.92852	26.35	26.069	26.998	-0.038671					70	32	3	0	0	0	0.27344	1	4336	4336		42.095	3.9434	1	691490	+		51118	18518	29117	29118	62798	62798					0.06707301357084816
VAAPLVRRT	9	Unmodified	_VAAPLVRRT_					0	0	0			REV__ENST00000529277.5_1_11:44587227-44639835:+|nuORF	REV__ENST00000529277.5_1_11:44587227-44639835:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2535400390625	2	491.811451	981.608348	-0.10815	-5.3191E-05	0.75369	0.00037067	0.64554	0.00031748	491.81169214639203	27.867	0.1148	27.867	27.764	27.879	0.0004673					5	3	2	0	0	0	0.25811	1	4776	4776		5.2307	0	1	20260	+		51119	19442	29118	29119	62799	62799					0.11680861670993181
VAAPLYLK	8	Unmodified	_VAAPLYLK_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.76104736328125	2	437.773471	873.53239	-0.15154	-6.6342E-05	0.10555	4.6209E-05	-0.04599	-2.0133E-05	437.7733658581705	61.258	0.48534	61.258	61.052	61.537	0					31	18	2	0	0	0	0.43455	1	15110	15110		11.114	0.93107	1	589660			51120	4855	29119	29120	62800	62800					0.09056464770833372
VAAPLYLK	8	Unmodified	_VAAPLYLK_					0	0	0		ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF	ENSG00000149262|ENST00000534064|INTS4	ENSG00000149262|ENST00000534064|INTS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.76092529296875	2	437.773471	873.53239	-0.10987	-4.81E-05	-0.034852	-1.5257E-05	-0.14473	-6.3357E-05	437.7734301505058	61.251	0.50632	61.242	61.046	61.552	-0.0094566					31	18	2	0	0	0	0.41716	1	15094	15094		17.087	2.5049	1	605820			51121	4855	29119	29120	62801	62801					0.09056464770833372
VAAPQINRNL	10	Unmodified	_VAAPQINRNL_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2;ENST00000549974.5_1_12:105593149-105601775:-|nuORF;ENST00000549573.5_1_12:105591633-105601793:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7876586914062	2	548.317097	1094.61964	0.20333	0.00011149	-0.52671	-0.0002888	-0.32338	-0.00017732	548.3167522360051	15.189	0.34648	15.125	15.013	15.36	-0.064414					18	11	2	0	0	0	0.32054	1	962	962		3.2813	0.28607	1	65700			51122	3937	29120	29121	62802	62802					0.07611638974458401
VAAQRQRYEQ	10	Unmodified	_VAAQRQRYEQ_					0	0	0		nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2;ENST00000487486.5_1_22:30188501-30200764:-|nuORF	nc|ENSG00000100325|Q9H1I8-3|ASCC2	nc|ENSG00000100325|Q9H1I8-3|ASCC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.2325439453125	3	416.886304	1247.63708	-0.12182	-5.0787E-05	-0.33225	-0.00013851	-0.45408	-0.0001893	416.8860821489763	15.118	0.65918	15.053	14.646	15.305	-0.064414					56	22	3	0	0	0	0.3198	1	902	902		2.086	0	1	264250			51123	1570	29121	29122	62803	62803					0.023169345094629534
VAAQRQRYEQ	10	Unmodified	_VAAQRQRYEQ_					0	0	0		nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2;ENST00000487486.5_1_22:30188501-30200764:-|nuORF	nc|ENSG00000100325|Q9H1I8-3|ASCC2	nc|ENSG00000100325|Q9H1I8-3|ASCC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	416.886304	1247.63708	-0.021527	-8.9744E-06	-0.50709	-0.0002114	-0.52862	-0.00022037	416.8860343211161	15.048	0.66845	14.938	14.535	15.204	-0.10982	-0.045108	-0.00038732	NaN	2.086	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161910			51124	1570	29121	29122							0.023169345094629534
VAARPRLLG	9	Unmodified	_VAARPRLLG_					0	0	0		ENST00000523828.5_1_17:78389306-78389548:+|nuORF	ENST00000523828.5_1_17:78389306-78389548:+|nuORF	ENST00000523828.5_1_17:78389306-78389548:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.8066711425781	2	476.806168	951.597784	0.29594	0.0001411	0.055038	2.6242E-05	0.35098	0.00016735	476.80618564742525	29.689	0.53479	29.701	29.469	30.004	0.012266					29	17	2	0	0	0	0.23783	1	5342	5342		12.532	0	1	215640			51125	11515	29122	29123	62804	62804					0.12004879016569703
VAARRSQQF	9	Unmodified	_VAARRSQQF_					0	0	0			REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3170166015625	2	531.793789	1061.57303	0.42442	0.0002257	3.3543	0.0017838	3.7788	0.0020095	531.7962961246659	32.977	0.40966	33.031	32.765	33.175	0.054375					21	14	2	0	0	0	0.25706	1	6293	6293		6.7232	1.9672	1	129460	+		51126	14599	29123	29124	62805	62805					0.04470199143179343
VAARRSQQF	9	Unmodified	_VAARRSQQF_					0	0	0			REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.793789	1061.57303	0.37539	0.00019963	3.3637	0.0017888	3.7391	0.0019885	531.7963190557708	33.174	0.422	33.174	32.837	33.259	0	0.10946	-0.00014236	NaN	9.3831	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87823	+		51127	14599	29123	29124							0.04470199143179343
VAARRSQQF	9	Unmodified	_VAARRSQQF_					0	0	0			REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	531.793789	1061.57303	0.34243	0.0001821	3.611	0.0019203	3.9535	0.0021024	531.7962145186691	32.934	0.38502	32.989	32.786	33.171	0.055309	-0.075729	0.00012063	NaN	9.3831	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151780	+		51128	14599	29123	29124							0.04470199143179343
VAASLVREF	9	Unmodified	_VAASLVREF_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2662658691406	2	496.282192	990.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.997	1	44.997	44.497	45.497	0								0	0	0	0.1612	1	10021	10021		32.117	0	1				51129	2059	29124	29125	62806	62806					0.05417760305851971
VAASLVREF	9	Unmodified	_VAASLVREF_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2662353515625	2	496.282192	990.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.774	1	44.843	44.343	45.343	0.068569								0	0	0	0.19325	1	9949	9949		24.674	0	1				51130	2059	29124	29125	62807	62807					0.05417760305851971
VAASVVVPA	9	Unmodified	_VAASVVVPA_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.1747741699219	2	406.747453	811.480354	-0.19669	-8.0003E-05	0.51842	0.00021087	0.32173	0.00013086	406.7475285563573	26.367	1.1003	26.367	26.106	27.207	0					73	38	3	0	0	0	0.1659	1	4378	4378		36.044	5.8194	1	698630	+		51131	13402	29125	29126	62808	62808					0.06707301357084816
VAATSGGGRP	10	Unmodified	_VAATSGGGRP_					0	0	0		ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;nc|ENSG00000204842|Q99700-2|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;ENST00000549455.1_1_12:111963110-112036838:-|nuORF	ENSG00000204842|ENST00000673436|ATXN2	ENSG00000204842|ENST00000673436|ATXN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.5556335449219	2	436.732866	871.451179	-0.23068	-0.00010074	0.15561	6.7962E-05	-0.075061	-3.2782E-05	436.732869807711	14.801	0.44416	14.691	14.51	14.955	-0.10981					26	15	2	0	0	0	0.32123	1	789	789		1.6526	0.85899	1	366340			51132	8257	29126	29127	62809	62809					0.010311570608109832
VAAVRQRV	8	Unmodified	_VAAVRQRV_					0	0	0		nc|ENSG00000172508|A5YM72|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1	nc|ENSG00000172508|A5YM72|CARNS1	nc|ENSG00000172508|A5YM72|CARNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.7822570800781	2	449.782693	897.550834	-0.13731	-6.1761E-05	-0.66043	-0.00029705	-0.79774	-0.00035881	449.78228823498364	12.814	0.63669	12.715	12.46	13.097	-0.099291					53	21	4	0	0	0	0.45307	1	245	245		4.756	0.81161	1	119080			51133	6642	29127	29128	62810	62810					0.09796019465420613
VAAVRQRV	8	Unmodified	_VAAVRQRV_					0	0	0		nc|ENSG00000172508|A5YM72|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1	nc|ENSG00000172508|A5YM72|CARNS1	nc|ENSG00000172508|A5YM72|CARNS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	449.782693	897.550834	-0.13875	-6.2409E-05	-0.87761	-0.00039474	-1.0164	-0.00045714	449.7822934628538	12.784	0.41759	12.784	12.641	13.058	0	0.033829	-3.9589E-05	NaN	4.756	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106160			51134	6642	29127	29128							0.09796019465420613
VAAVRQRV	8	Unmodified	_VAAVRQRV_					0	0	0		nc|ENSG00000172508|A5YM72|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1	nc|ENSG00000172508|A5YM72|CARNS1	nc|ENSG00000172508|A5YM72|CARNS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	449.782693	897.550834	-0.20892	-9.3969E-05	-0.93138	-0.00041892	-1.1403	-0.00051289	449.7822136015833	12.819	0.55884	12.752	12.434	12.993	-0.067496	0.0013476	-8.7957E-05	NaN	4.756	36	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99024			51135	6642	29127	29128							0.09796019465420613
VACGRGKK	8	Unmodified	_VACGRGKK_					0	0	0		ENST00000505061.5_1_15:42105116-42107966:+|nuORF;nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000502292.5_1_15:42105116-42105356:+|nuORF;nc|ENSG00000137802|O60336-3|MAPKBP1	ENST00000505061.5_1_15:42105116-42107966:+|nuORF	ENST00000505061.5_1_15:42105116-42107966:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2504577636719	2	409.736897	817.459241	-0.35533	-0.00014559	2.6674	0.0010929	2.312	0.00094733	409.73927490500694	14.861	0.11121	14.861	14.789	14.9	0					6	3	2	0	0	0	0.34437	1	833	833		0.69038	0	1	5925.8			51136	11309	29128	29129	62811	62811					0.04321012776586031
VACLAIFV	8	Unmodified	_VACLAIFV_					0	0	0		ENSG00000213088|ENST00000368122|ACKR1;nc|ENSG00000213088|Q16570-2|ACKR1	ENSG00000213088|ENST00000368122|ACKR1	ENSG00000213088|ENST00000368122|ACKR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.9276123046875	2	418.24095	834.467346	0.50694	0.00021202	-0.025482	-1.0658E-05	0.48146	0.00020136	418.24108570792197	55.913	0.89339	55.913	55.374	56.267	0					42	31	2	0	0	0	0.34297	1	13322	13322		2.8892	0	1	1303000			51137	8333	29129	29130	62812	62812					0.043491469733453414
VADAIRRDRFE	11	Unmodified	_VADAIRRDRFE_					0	0	0		ENSG00000185220|ENST00000329291|PGBD2	ENSG00000185220|ENST00000329291|PGBD2	ENSG00000185220|ENST00000329291|PGBD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.2793273925781	3	449.909109	1346.7055	0.063355	2.8504E-05	1.1504	0.00051758	1.2138	0.00054608	449.91077760411804	26.256	0.50987	26.256	25.9	26.41	0					24	17	2	0	0	0	0.33094	1	4295	4295		7.4771	0	1	55932			51138	7515	29130	29131	62813	62813					0.04601179089308971
VADIKKLKS	9	Unmodified	_VADIKKLKS_					0	0	0		nc|ENSG00000100206|Q14565-2|DMC1;ENSG00000100206|ENST00000216024|DMC1	nc|ENSG00000100206|Q14565-2|DMC1	nc|ENSG00000100206|Q14565-2|DMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.3212585449219	2	501.321317	1000.62808	0.28872	0.00014474	0.13598	6.8171E-05	0.4247	0.00021291	501.3213371679463	16.508	0.44023	16.445	16.205	16.646	-0.062534					32	14	3	0	0	0	0.23767	1	1371	1371		18.146	1.9972	1	121600			51139	1545	29131	29132	62814	62814					0.12779192891082403
VADKGAPNSI	10	Unmodified	_VADKGAPNSI_					0	0	0			REV__nc|ENSG00000184313|Q68CQ1-4|MROH7	REV__nc|ENSG00000184313|Q68CQ1-4|MROH7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2746887207031	2	486.261456	970.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.658	1	30.658	30.158	31.158	0								0	0	0	0.33404	1	5637	5637		21.537	1.0834	1		+		51140	18311	29132	29133	62815	62815					0.021925795465108422
VADKVKSAP	9	Unmodified	_VADKVKSAP_					0	0	0			REV__ENSG00000145220|ENST00000343470|LYAR	REV__ENSG00000145220|ENST00000343470|LYAR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2584533691406	2	457.768917	913.523281	0.27044	0.0001238	-0.52944	-0.00024236	-0.259	-0.00011856	457.7686914949891	36.395	0.45429	36.478	36.331	36.785	0.082355					31	15	3	0	0	0	0.24913	1	7345	7345		12.532	3.1841	1	237660	+		51141	16285	29133	29134	62816	62816					0.06306071414519465
VADNAYVLI	9	Unmodified	_VADNAYVLI_					0	0	0			REV__BMP3|p.A248V|1|0.3|ENSG00000152785|chr4:81046164-81046164|C/T|missense_variant	REV__BMP3|p.A248V|1|0.3|ENSG00000152785|chr4:81046164-81046164|C/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.6866455078125	2	489.26875	976.522947	0.36764	0.00017987	0.30551	0.00014948	0.67315	0.00032935	489.26895294459376	66.673	0.88319	66.673	66.396	67.279	0					45	30	2	0	0	0	0.23784	1	16699	16699		19.257	5.3509	1	402400	+		51142	13128	29134	29135	62817	62817					0.03374651694673503
VADNAYVLI	9	Unmodified	_VADNAYVLI_					0	0	0			REV__BMP3|p.A248V|1|0.3|ENSG00000152785|chr4:81046164-81046164|C/T|missense_variant	REV__BMP3|p.A248V|1|0.3|ENSG00000152785|chr4:81046164-81046164|C/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.6864929199219	2	489.26875	976.522947	0.33544	0.00016412	0.57367	0.00028068	0.9091	0.0004448	489.2690371971639	66.561	0.7735	66.645	66.327	67.1	0.083824					52	27	3	0	0	0	0.20167	1	16648	16648		29.082	1.4528	1	350310	+		51143	13128	29134	29135	62818	62818					0.03374651694673503
VADNAYVLI	9	Unmodified	_VADNAYVLI_					0	0	0			REV__BMP3|p.A248V|1|0.3|ENSG00000152785|chr4:81046164-81046164|C/T|missense_variant	REV__BMP3|p.A248V|1|0.3|ENSG00000152785|chr4:81046164-81046164|C/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.68658447265625	2	489.26875	976.522947	0.20963	0.00010256	0.40135	0.00019637	0.61098	0.00029893	489.2689590846102	66.656	0.73859	66.643	66.379	67.118	-0.013588					40	26	2	0	0	0	0.20167	1	16672	16672		29.082	6.3453	1	384330	+		51144	13128	29134	29135	62819	62819					0.03374651694673503
VADPETRTV	9	Unmodified	_VADPETRTV_					0	0	0		nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF;ENSG00000039650|ENST00000322344|PNKP;ENST00000595792.1_1_19:50369586-50370764:-|nuORF;ENST00000594661.5_1_19:50367579-50369988:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000594661.5_1_19:50367579-50369988:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2589416503906	2	494.258914	986.503274	0.29887	0.00014772	0.0010129	5.0062E-07	0.29988	0.00014822	494.2589473478596	24.123	0.75536	24.123	23.699	24.454	0					57	25	3	0	0	0	0.15763	1	3628	3628		29.841	5.82	1	198510			51145	599;12217	29135	29136	62820	62820					0.009482756839020112
VADPETRTV	9	Unmodified	_VADPETRTV_					0	0	0		nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF;ENSG00000039650|ENST00000322344|PNKP;ENST00000595792.1_1_19:50369586-50370764:-|nuORF;ENST00000594661.5_1_19:50367579-50369988:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000594661.5_1_19:50367579-50369988:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.25927734375	2	494.258914	986.503274	0.40052	0.00019796	-0.24157	-0.0001194	0.15896	7.8565E-05	494.25883115354753	24.296	0.79077	24.224	23.821	24.612	-0.072559					61	26	4	0	0	0	0.12279	2	3679	3679;3732		34.932	12.985	1	275750			51146	599;12217	29135	29136	62821;62822	62821					0.009482756839020112
VADPETRTV	9	Unmodified	_VADPETRTV_					0	0	0		nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF;ENSG00000039650|ENST00000322344|PNKP;ENST00000595792.1_1_19:50369586-50370764:-|nuORF;ENST00000594661.5_1_19:50367579-50369988:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000594661.5_1_19:50367579-50369988:-|nuORF	nc|ENSG00000039650|Q96T60-2|PNKP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2591857910156	2	494.258914	986.503274	0.30197	0.00014925	0.24929	0.00012321	0.55126	0.00027247	494.2589553285124	24.267	0.85369	24.228	23.848	24.702	-0.038927					57	29	3	0	0	0	0.1426	1	3687	3687		32.037	7.0465	1	236250			51147	599;12217	29135	29136	62823	62823					0.009482756839020112
VADVLPVL	8	Unmodified	_VADVLPVL_					0	0	0		ENST00000273064.10_1_2:219433379-219433487:+|nuORF	ENST00000273064.10_1_2:219433379-219433487:+|nuORF	ENST00000273064.10_1_2:219433379-219433487:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2582092285156	2	413.257654	824.500755	0.33015	0.00013644	0.59618	0.00024637	0.92632	0.00038281	413.25793546234286	88.322	0.69894	88.411	88.052	88.751	0.089195					99	31	4	0	0	0	0.2157	1	23344	23344		40.449	0	1	720370			51148	9092	29136	29137	62824	62824					0.08148472016898722
VADVLPVL	8	Unmodified	_VADVLPVL_					0	0	0		ENST00000273064.10_1_2:219433379-219433487:+|nuORF	ENST00000273064.10_1_2:219433379-219433487:+|nuORF	ENST00000273064.10_1_2:219433379-219433487:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	413.257654	824.500755	0.11115	4.5933E-05	0.7714	0.00031879	0.88255	0.00036472	413.25794933174194	88.378	0.71912	88.378	88.049	88.768	0	0.0010458	0.00014773	NaN	40.449	89	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462070			51149	9092	29136	29137							0.08148472016898722
VAECDLVY	8	Unmodified	_VAECDLVY_					0	0	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.26922607421875	2	456.212586	910.410619	0.39299	0.00017929	-3.004	-0.0013704	-2.611	-0.0011912	456.211085047803	40.205	0.42275	40.297	40.051	40.474	0.09267					21	14	2	0	0	0	0.34185	1	8507	8507		10.183	0	1	154060			51150	3689	29137	29138	62825	62825					-0.04816945373852377
VAEEELLR	8	Unmodified	_VAEEELLR_					0	0	0			REV__ENSG00000162779|ENST00000367618|AXDND1	REV__ENSG00000162779|ENST00000367618|AXDND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7501220703125	2	479.763832	957.513111	-0.015546	-7.4584E-06	0.0024624	1.1814E-06	-0.013084	-6.277E-06	479.7638903767552	18.846	1.5103	18.846	18.535	20.045	0					145	53	5	0	0	0	0.4419	1	2199	2199		8.5933	0	1	3393400	+		51151	17010	29138	29139	62826	62826					0.03265463689297121
VAEERFRLEFF	11	Unmodified	_VAEERFRLEFF_					0	0	0		ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2262878417969	3	481.585743	1441.7354	0.1593	7.6715E-05	0.49048	0.00023621	0.64978	0.00031292	481.5860239266156	43.71	0.46375	43.71	43.414	43.878	0					29	16	2	0	0	0	0.33277	1	9567	9567		3.0723	0.22898	1	188860			51152	5503	29139	29140	62827	62827					0.03220118034641928
VAEFVPVL	8	Unmodified	_VAEFVPVL_					0	0	0			REV__nc|ENSG00000163694|A0AV96-2|RBM47	REV__nc|ENSG00000163694|A0AV96-2|RBM47	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2371826171875	2	437.257654	872.500755	0.40789	0.00017835	0.063047	2.7568E-05	0.47094	0.00020592	437.25773323913586	77.842	0.68217	77.897	77.541	78.223	0.055412					39	24	3	0	0	0	0.33995	1	20028	20028		5.7604	0	1	213950	+		51153	17082	29140	29141	62828	62828					0.05940472016891363
VAEFVPVL	8	Unmodified	_VAEFVPVL_					0	0	0			REV__nc|ENSG00000163694|A0AV96-2|RBM47	REV__nc|ENSG00000163694|A0AV96-2|RBM47	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	437.257654	872.500755	0.53906	0.00023571	-0.4343	-0.0001899	0.10475	4.5804E-05	437.25751176544094	77.895	0.62569	77.864	77.573	78.199	-0.031036	-0.013605	-0.00030811	NaN	5.7604	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225300	+		51154	17082	29140	29141							0.05940472016891363
VAEGSRVY	8	Unmodified	_VAEGSRVY_					0	0	0		nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-2|PALLD;ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-6|PALLD	nc|ENSG00000129116|Q8WX93-5|PALLD	nc|ENSG00000129116|Q8WX93-5|PALLD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.29998779296875	2	440.729792	879.445031	-0.010557	-4.6527E-06	0.0030728	1.3543E-06	-0.007484	-3.2984E-06	440.72973843471374	28.626	0.61831	28.626	28.36	28.978	0					32	21	2	0	0	0	0.3408	1	5118	5118		10.074	2.7847	1	126160			51155	12695	29141	29142	62829	62829					0.000486388292756601
VAEKPADH	8	Unmodified	_VAEKPADH_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.L2576Sfs*7|1|0.05|ENSG00000164309|chr5:79736491-79736492|-/C|frameshift_variant;CMYA5|p.L2576Kfs*8|1|0.05|ENSG00000164309|chr5:79736490-79736491|-/AAGC|frameshift_variant	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.2321472167969	2	433.721967	865.429381	-0.27711	-0.00012019	-0.02123	-9.208E-06	-0.29834	-0.0001294	433.72181233408065	22.478	0.55113	22.433	22.266	22.817	-0.044867					22	18	2	0	0	0	0.34337	1	3260	3260		5.2307	0.47466	1	40937			51156	5828	29142	29143	62830	62830					-0.00871647687768018
VAELQKTL	8	Unmodified	_VAELQKTL_					0	0	0			REV__ENST00000555196.5_1_14:74417278-74423148:+|nuORF	REV__ENST00000555196.5_1_14:74417278-74423148:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.5541687011719	2	451.271293	900.528032	0.29644	0.00013377	1.1339	0.0005117	1.4303	0.00064547	451.2717821882987	48.894	0.81881	48.894	48.448	49.267	0					44	29	2	0	0	0	0.23494	1	11180	11180		37.974	0	1	826710	+		51157	15057	29143	29144	62831	62831					0.07378955557271638
VAELQKTL	8	Unmodified	_VAELQKTL_					0	0	0			REV__ENST00000555196.5_1_14:74417278-74423148:+|nuORF	REV__ENST00000555196.5_1_14:74417278-74423148:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	451.271293	900.528032	0.1058	4.7747E-05	1.3763	0.00062107	1.4821	0.00066882	451.2717902386118	48.835	0.82839	48.867	48.497	49.326	0.032043	-0.060875	0.00013342	NaN	37.974	43	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	894040	+		51158	15057	29143	29144							0.07378955557271638
VAELVGYRVT	10	Unmodified	_VAELVGYRVT_					0	0	0		ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8140869140625	2	553.813856	1105.61316	0.3425	0.00018968	0.3836	0.00021244	0.72611	0.00040213	553.8139945455957	20.227	0.91977	20.227	19.933	20.853	0					83	33	4	0	0	0	0.41168	1	2604	2604		1.3295	0	1	1034500			51159	4173	29144	29145	62832	62832					0.06457701023077789
VAEQIRAK	8	Unmodified	_VAEQIRAK_					0	0	0			REV__nc|ENSG00000132182|Q8TEM1-2|NUP210	REV__nc|ENSG00000132182|Q8TEM1-2|NUP210	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.1640930175781	2	457.774534	913.534515	0.18075	8.2743E-05	0.62128	0.0002844	0.80203	0.00036715	457.7749757642905	26.285	0.27631	26.262	26.105	26.381	-0.022236					21	9	3	0	0	0	0.3366	1	4281	4281		18.135	0	1	101570	+		51160	15551	29145	29146	62833	62833					0.07428893508665624
VAERGAAKVP	10	Unmodified	_VAERGAAKVP_					0	0	0			REV__THE1-int_dup204|chr19:6582810-6583003:-|2.301127010833396|0.0156202008557334|7.2|516.0|6|3|sense	REV__THE1-int_dup204|chr19:6582810-6583003:-|2.301127010833396|0.0156202008557334|7.2|516.0|6|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.29315185546875	2	499.293091	996.571629	0.25486	0.00012725	-0.22251	-0.0001111	0.032351	1.6153E-05	499.29283065635434	17.839	0.9048	17.779	17.18	18.084	-0.060429					52	31	2	0	0	0	0.34325	1	1739	1739		13.906	1.6654	1	76854	+		51161	23322	29146	29147	62834	62834					0.07320565054419603
VAFDAVLRFAE	11	Unmodified	_VAFDAVLRFAE_					0	0	0		nc|ENSG00000234616|O75564|JRK;ENSG00000234616|ENST00000612905|JRK	nc|ENSG00000234616|O75564|JRK	nc|ENSG00000234616|O75564|JRK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.223876953125	3	413.224034	1236.65027	0.018028	7.4497E-06	-0.14983	-6.1915E-05	-0.1318	-5.4465E-05	413.22389872664513	68.924	0.84225	68.924	68.643	69.485	0					69	29	4	0	0	0	0.21521	1	17413	17413		19.144	0	1	669700			51162	8487	29147	29148	62835	62835					0.04141372568847146
VAFDAVLRFAE	11	Unmodified	_VAFDAVLRFAE_					0	0	0		nc|ENSG00000234616|O75564|JRK;ENSG00000234616|ENST00000612905|JRK	nc|ENSG00000234616|O75564|JRK	nc|ENSG00000234616|O75564|JRK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.22393798828125	3	413.224034	1236.65027	0.21587	8.9203E-05	-0.29816	-0.00012321	-0.082291	-3.4005E-05	413.2238929973504	68.927	0.83963	68.908	68.652	69.492	-0.019157					88	29	4	0	0	0	0.15851	1	17408	17408		23.016	4.2944	1	1944600			51163	8487	29147	29148	62836	62836					0.04141372568847146
VAFLGTLLPL	10	Unmodified	_VAFLGTLLPL_					0	0	0			REV__ENSG00000163472|ENST00000405535|TMEM79	REV__ENSG00000163472|ENST00000405535|TMEM79	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3279418945312	2	522.328611	1042.64267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.229	1	91.229	90.729	91.729	0								0	0	0	0.34994	1	24218	24218		14.838	0	1		+		51164	17055	29148	29149	62837	62837					0.12305265039231017
VAFPESINLAK	11	Unmodified	_VAFPESINLAK_					0	0	0			REV__ENSG00000031081|ENST00000264245|ARHGAP31	REV__ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.835693359375	2	594.834788	1187.65502	0.7181	0.00042715	0.72339	0.0004303	1.4415	0.00085745	594.8350346244761	54.706	0.64053	54.69	54.31	54.95	-0.015923					50	22	3	0	0	0	0.082028	1	12994	12994		43.982	10.537	1	1191300	+		51165	13494	29149	29150	62838	62838					0.06870256711590628
VAFPESINLAK	11	Unmodified	_VAFPESINLAK_					0	0	0			REV__ENSG00000031081|ENST00000264245|ARHGAP31	REV__ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	594.834788	1187.65502	0.81105	0.00048244	0.22507	0.00013388	1.0361	0.00061632	594.8347898565128	54.645	0.60284	54.645	54.405	55.008	0	-0.028988	-0.00012721	NaN	43.982	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1152600	+		51166	13494	29149	29150							0.06870256711590628
VAFPESINLAK	11	Unmodified	_VAFPESINLAK_					0	0	0			REV__ENSG00000031081|ENST00000264245|ARHGAP31	REV__ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	594.834788	1187.65502	0.76365	0.00045425	0.2747	0.0001634	1.0384	0.00061765	594.8348730716291	54.623	0.55507	54.687	54.434	54.989	0.063206	0.012689	-6.8164E-05	NaN	43.982	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1029600	+		51167	13494	29149	29150							0.06870256711590628
VAFPESINLAK	11	Unmodified	_VAFPESINLAK_					0	0	0			REV__ENSG00000031081|ENST00000264245|ARHGAP31	REV__ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	594.834788	1187.65502	0.7181	0.00042715	0.72339	0.0004303	1.4415	0.00085745	594.8350346244761	54.706	0.64053	54.69	54.31	54.95	-0.015923	0.016299	0.00046563	NaN	43.982	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1191300	+		51168	13494	29149	29150							0.06870256711590628
VAFSQVLTI	9	Unmodified	_VAFSQVLTI_					0	0	0		ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2869873046875	2	489.286943	976.559333	0.54623	0.00026726	-0.055821	-2.7313E-05	0.49041	0.00023995	489.28685243121174	77.313	1.1327	77.313	77.011	78.144	0					94	41	4	0	0	0	5.5754E-11	2	19924	19924;19976		185.05	84.679	1	2361300			51169	1942	29150	29151	62839;62840	62839					0.07011528591374372
VAFSQVLTI	9	Unmodified	_VAFSQVLTI_					0	0	0		ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2872314453125	2	489.286943	976.559333	0.50793	0.00024853	-0.027368	-1.3391E-05	0.48057	0.00023513	489.28685054875024	77.237	1.1024	77.292	77.01	78.112	0.05542					103	39	4	0	0	0	2.32E-07	1	19951	19951		171.09	70.715	1	2327000			51170	1942	29150	29151	62841	62841					0.07011528591374372
VAFSQVLTI	9	Unmodified	_VAFSQVLTI_					0	0	0		ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.287109375	2	489.286943	976.559333	0.6958	0.00034045	-0.21645	-0.00010591	0.47935	0.00023454	489.28675622646927	77.318	1.101	77.287	76.991	78.092	-0.031334					85	39	4	0	0	0	2.32E-07	1	19922	19922		171.09	82.132	1	2430000			51171	1942	29150	29151	62842	62842					0.07011528591374372
VAFVLALGAF	10	Unmodified	_VAFVLALGAF_					0	0	0		nc|ENSG00000110881|P78348-3|ASIC1	nc|ENSG00000110881|P78348-3|ASIC1	nc|ENSG00000110881|P78348-3|ASIC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.77569580078125	2	504.299853	1006.58515	0.41677	0.00021018	-0.79109	-0.00039895	-0.37432	-0.00018877	504.3003621874458	72.006	0.96621	71.979	71.63	72.596	-0.027275					65	34	3	0	0	0	0.25344	1	18424	18424		24.674	6.5389	1	328850			51172	12647	29151	29152	62843	62843					0.0821242283365109
VAFWELLT	8	Unmodified	_VAFWELLT_					0	0	0		ENSG00000185156|ENST00000329805|MFSD6L	ENSG00000185156|ENST00000329805|MFSD6L	ENSG00000185156|ENST00000329805|MFSD6L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.28704833984375	2	489.768386	977.522219	0.17579	8.6097E-05	0.58691	0.00028745	0.76271	0.00037355	489.7684316566457	76.235	1.2913	76.289	76.189	77.48	0.053421					73	45	2	0	0	0	0.32778	1	19899	19899		20.871	1.6142	1	608630			51173	7511	29152	29153	62844	62844					0.032558570455989866
VAFYLAGVPPL	11	Unmodified	_VAFYLAGVPPL_					0	0	0		ENSG00000112394|ENST00000368851|SLC16A10	ENSG00000112394|ENST00000368851|SLC16A10	ENSG00000112394|ENST00000368851|SLC16A10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.8316040039062	2	573.831517	1145.64848	0.40634	0.00023317	-0.59639	-0.00034222	-0.19004	-0.00010905	573.8309632161339	86.872	0.99264	86.872	86.354	87.346	0					69	40	2	0	0	0	0.43437	1	22905	22905		6.7232	0.51738	1	222790			51174	2435	29153	29154	62845	62845					0.08148363550890281
VAGAVWVLV	9	Unmodified	_VAGAVWVLV_					0	0	0		ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	ENSG00000175591|ENST00000393597|P2RY2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.26409912109375	2	457.278921	912.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.148	1	75.2	74.7	75.7	0.052361								0	0	0	0.22457	1	19285	19285		14.582	0	1				51175	6874	29154	29155	62846	62846					0.08351867145131564
VAGFKQMYKK	10	Unmodified	_VAGFKQMYKK_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3342895507812	2	600.333901	1198.65325	0.70395	0.0004226	0.49544	0.00029743	1.1994	0.00072003	600.3340324848331	84.504	1.742	84.504	84.163	85.905	0					135	66	3	0	0	0	0.39935	2	22293	22293;22418		3.5965	0.31518	1	1184300	+		51176	18154	29155	29156	62847;62848	62847					0.06186924421990625
VAGFKQMYKK	10	Unmodified	_VAGFKQMYKK_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3344116210938	2	600.333901	1198.65325	0.71064	0.00042662	0.58222	0.00034953	1.2929	0.00077615	600.3340446435084	83.86	2.8022	83.937	83.243	86.045	0.077095					275	109	3	0	0	0	0.39935	3	21826	21826;22310;22397		3.5965	0	1	1104800	+		51177	18154	29155	29156	62849;62850;62851	62849					0.06186924421990625
VAGFKQMYKK	10	Unmodified	_VAGFKQMYKK_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3351440429688	2	600.333901	1198.65325	0.46962	0.00028193	1.0274	0.00061679	1.497	0.00089872	600.3346338446844	82.233	2.1935	82.209	81.045	83.239	-0.02404					129	90	2	0	0	0	0.39935	1	21507	21507		3.5965	0	1	430490	+		51178	18154	29155	29156	62852	62852					0.06186924421990625
VAGKRQPL	8	Unmodified	_VAGKRQPL_					0	0	0			REV__ENSG00000145331|ENST00000394876|TRMT10A	REV__ENSG00000145331|ENST00000394876|TRMT10A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.2321472167969	2	434.771794	867.529036	-0.18268	-7.9423E-05	-1.9953	-0.00086752	-2.178	-0.00094694	434.7711702407599	22.879	0.58032	22.834	22.616	23.197	-0.044867					32	20	2	0	0	0	0.3439	1	3260	3260		2.8892	0	1	35137	+		51179	16287	29156	29157	62853	62853					0.08997214716828239
VAGNALLLYS	10	Unmodified	_VAGNALLLYS_					0	0	0		ENST00000484268.1_1_7:48352666-48443694:+|nuORF	ENST00000484268.1_1_7:48352666-48443694:+|nuORF	ENST00000484268.1_1_7:48352666-48443694:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.8081970214844	2	510.78985	1019.56515	0.40548	0.00020711	1.7124	0.00087468	2.1179	0.0010818	511.291719340277	53.047	0.71802	53.047	52.824	53.542	0					69	26	4	0	0	0	0.2811	1	12619	12619		22.736	2.2827	1	1568600			51180	11072	29157	29158	62854	62854					0.05614627103057046
VAGPREALS	9	Unmodified	_VAGPREALS_					0	0	0		nc|ENSG00000103199|O60304-2|ZNF500;ENSG00000103199|ENST00000219478|ZNF500	nc|ENSG00000103199|O60304-2|ZNF500	nc|ENSG00000103199|O60304-2|ZNF500	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.88861083984375	2	450.250892	898.48723	0.1436	6.4657E-05	-1.4444	-0.00065035	-1.3008	-0.00058569	450.2502255570534	43.886	0.27207	43.886	43.767	44.039	0					12	9	2	0	0	0	0.25526	1	9687	9687		7.9102	0	1	85441			51181	1818	29158	29159	62855	62855					0.03392614237657199
VAGPRKGPL	9	Unmodified	_VAGPRKGPL_					0	0	0		nc|ENSG00000122678|Q9NP87-2|POLM;ENSG00000122678|ENST00000242248|POLM;nc|ENSG00000122678|Q9NP87-3|POLM	nc|ENSG00000122678|Q9NP87-2|POLM	nc|ENSG00000122678|Q9NP87-2|POLM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.2636413574219	2	447.779619	893.544686	-0.013042	-5.8398E-06	-1.0967	-0.00049108	-1.1097	-0.00049691	447.7789353333991	18.716	0.61928	18.599	18.242	18.862	-0.11739					38	21	3	0	0	0	0.24739	1	2029	2029		13.508	0	1	70396			51182	3059	29159	29160	62856	62856					0.09365501233889972
VAGPSRRGPF	10	Unmodified	_VAGPSRRGPF_					0	0	0			REV__ENST00000599538.5_1_19:50528609-50528858:-|nuORF	REV__ENST00000599538.5_1_19:50528609-50528858:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2832641601562	2	522.290882	1042.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.549	1	54.613	54.113	55.113	0.063202								0	0	0	0.33945	1	12963	12963		19.257	1.1106	1		+		51183	22625	29160	29161	62857	62857					0.04763100631521411
VAGRLLPADE	10	Unmodified	_VAGRLLPADE_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3167724609375	2	520.790381	1039.56621	0.32283	0.00016813	2.1287	0.0011086	2.4515	0.0012767	520.7925387509442	59.345	0.48753	59.345	59.162	59.65	0					21	16	2	0	0	0	0.31358	1	14411	14411		5.7319	1.4026	1	155670	+		51184	14358	29161	29162	62858	62858					0.048008414719333814
VAGVHKSI	8	Unmodified	_VAGVHKSI_					0	0	0			REV__ENST00000429403.5_1_3:5213836-5214358:+|nuORF	REV__ENST00000429403.5_1_3:5213836-5214358:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.908203125	2	405.745245	809.475937	-0.36064	-0.00014633	-0.13373	-5.4258E-05	-0.49437	-0.00020059	405.7452538143992	30.183	0.80509	30.21	29.864	30.669	0.027157					50	27	3	0	0	0	0.34092	1	5610	5610		13.508	4.9146	1	124480	+		51185	20930	29162	29163	62859	62859					0.06357836934171246
VAGVHKSI	8	Unmodified	_VAGVHKSI_					0	0	0			REV__ENST00000429403.5_1_3:5213836-5214358:+|nuORF	REV__ENST00000429403.5_1_3:5213836-5214358:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	405.745245	809.475937	0.0055328	2.2449E-06	-0.012671	-5.1413E-06	-0.0071384	-2.8964E-06	405.7451322692238	30.157	0.70133	30.157	29.917	30.619	0	-0.056036	6.8857E-05	NaN	4.756	37	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157870	+		51186	20930	29162	29163							0.06357836934171246
VAGVHKSI	8	Unmodified	_VAGVHKSI_					0	0	0			REV__ENST00000429403.5_1_3:5213836-5214358:+|nuORF	REV__ENST00000429403.5_1_3:5213836-5214358:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	405.745245	809.475937	-0.0237	-9.616E-06	-0.17895	-7.2606E-05	-0.20264	-8.2222E-05	405.7451208336831	30.244	0.73621	30.272	29.901	30.638	0.027946	0.058685	-6.6072E-05	NaN	4.756	36	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191300	+		51187	20930	29162	29163							0.06357836934171246
VAGVIRRL	8	Unmodified	_VAGVIRRL_					0	0	0		ENSG00000076242|ENST00000231790|MLH1;MLH1|p.I501Nfs*10|1|0.49|ENSG00000076242|chr3:37028873-37028874|-/TAACCTCA|frameshift_variant	ENSG00000076242|ENST00000231790|MLH1	ENSG00000076242|ENST00000231790|MLH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.9089050292969	2	442.295436	882.57632	0.42139	0.00018638	0.32877	0.00014541	0.75016	0.00033179	442.2956097243944	32.579	0.35833	32.579	32.391	32.749	0					25	12	3	0	0	0	0.34147	1	6188	6188		11.114	0	1	196630			51188	1060	29163	29164	62860	62860					0.13033493987848033
VAGVTVVLL	9	Unmodified	_VAGVTVVLL_					0	0	0			REV__ENST00000306862.6_1_5:43515092-43515200:-|nuORF	REV__ENST00000306862.6_1_5:43515092-43515200:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.2508239746094	2	435.786579	869.558604	-0.24574	-0.00010709	0.2253	9.8183E-05	-0.020439	-8.9069E-06	435.78666057912346	69.441	0.58592	69.441	69.229	69.815	0					34	20	2	0	0	0	0.21137	1	17532	17532		24.674	0	1	300510	+		51189	19862	29164	29165	62861	62861					0.11860733942330626
VAHGDEAGLP	10	Unmodified	_VAHGDEAGLP_					0	0	0		ENST00000429656.1_1_6:29910340-29910628:-|nuORF	ENST00000429656.1_1_6:29910340-29910628:-|nuORF	ENST00000429656.1_1_6:29910340-29910628:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.255126953125	2	483.237981	964.461409	0.26853	0.00012976	0.098228	4.7468E-05	0.36676	0.00017723	483.2375981196363	23.406	0.58567	23.361	23.06	23.645	-0.044867					30	20	3	0	0	0	0.37587	1	3450	3450		7.9102	0	1	54695			51190	10455	29165	29166	62862	62862					-0.022242800046228695
VAHLALQI	8	Unmodified	_VAHLALQI_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.7686462402344	2	432.76872	863.522887	-0.13206	-5.7152E-05	0.51563	0.00022315	0.38357	0.000166	432.76873738326714	51.916	0.67585	51.916	51.648	52.324	0					57	24	3	0	0	0	0.16192	1	12143	12143		49.669	0	1	871020			51191	1828	29166	29167	62863	62863					0.08566696485331704
VAHPGFYAV	9	Unmodified	_VAHPGFYAV_					0	0	0		nc|ENSG00000278023|Q8NG50-9|RDM1;nc|ENSG00000278023|Q8NG50-4|RDM1;nc|ENSG00000278023|Q8NG50-8|RDM1;nc|ENSG00000278023|Q8NG50-3|RDM1;nc|ENSG00000278023|Q8NG50-11|RDM1;nc|ENSG00000278023|Q8NG50-10|RDM1;nc|ENSG00000278023|Q8NG50-6|RDM1;nc|ENSG00000278023|Q8NG50-12|RDM1;nc|ENSG00000278023|Q8NG50-5|RDM1;nc|ENSG00000278023|Q8NG50-2|RDM1;ENSG00000278023|ENST00000620284|RDM1	nc|ENSG00000278023|Q8NG50-9|RDM1	nc|ENSG00000278023|Q8NG50-9|RDM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7500305175781	2	480.750527	959.486502	0.19358	9.3063E-05	-0.69862	-0.00033586	-0.50504	-0.0002428	480.7501059129329	19.518	0.81114	19.402	19.116	19.927	-0.11592					71	27	3	0	0	0	0.34374	1	2403	2403		2.3027	0	1	291880			51192	8737	29167	29168	62864	62864					0.00513819588604747
VAHQQLIQI	9	Unmodified	_VAHQQLIQI_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3087158203125	2	525.308741	1048.60293	0.72388	0.00038026	-0.4474	-0.00023502	0.27648	0.00014524	525.3083989925382	45.979	0.60398	45.979	45.694	46.298	0					36	21	2	0	0	0	0.027237	1	10331	10331		61.357	9.0891	1	1017300			51193	259	29168	29169	62865	62865					0.08057138088520333
VAHQQLIQI	9	Unmodified	_VAHQQLIQI_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.308837890625	2	525.308741	1048.60293	0.36398	0.0001912	0.1735	9.114E-05	0.53748	0.00028234	525.3087585817769	45.767	0.58477	45.827	45.565	46.15	0.059837					35	20	2	0	0	0	0.013258	1	10245	10245		74.423	3.2892	1	1115000			51194	259	29168	29169	62866	62866					0.08057138088520333
VAHQQLIQI	9	Unmodified	_VAHQQLIQI_					0	0	0		DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant;ENSG00000167986|ENST00000301764|DDB1	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	DDB1|p.W1047Cfs*15|1|0.04|ENSG00000167986|chr11:61302331-61302332|-/AGAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.30908203125	2	525.308741	1048.60293	0.71046	0.00037321	-0.33534	-0.00017616	0.37512	0.00019706	525.308419463876	45.789	0.60497	45.854	45.595	46.2	0.065048					36	21	2	0	0	0	0.1524	1	10240	10240		39.957	14.558	1	1006000			51195	259	29168	29169	62867	62867					0.08057138088520333
VAHQSFRI	8	Unmodified	_VAHQSFRI_					0	0	0			REV__ENSG00000177807|ENST00000644903|KCNJ10	REV__ENSG00000177807|ENST00000644903|KCNJ10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7398986816406	2	479.266876	956.519199	0.59749	0.00028636	-0.40876	-0.00019591	0.18873	9.045E-05	479.26780245222443	78.85	0.19907	78.819	78.715	78.914	-0.030426					12	7	2	0	0	0	0.34131	1	20399	20399		12.532	0	1	36511	+		51196	18004	29169	29170	62868	62868					0.03920026711466562
VAHRCRLNKQ	10	Unmodified	_VAHRCRLNKQ_					0	0	0			REV__ENST00000489350.5_1_3:156547118-156638402:+|nuORF	REV__ENST00000489350.5_1_3:156547118-156638402:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5698547363281	3	408.896257	1223.66694	-0.24916	-0.00010188	-4.3798	-0.0017909	-4.629	-0.0018928	408.8938291605195	25.66	0.16344	25.606	25.515	25.679	-0.054308					6	5	2	0	0	0	0.32051	1	4112	4112		1.9064	0.71303	1	41320	+		51197	21587	29170	29171	62869	62869					0.06405594973807638
VAHSLSLL	8	Unmodified	_VAHSLSLL_					0	0	0		ENST00000299427.10_2_11:6635118-6635532:-|nuORF	ENST00000299427.10_2_11:6635118-6635532:-|nuORF	ENST00000299427.10_2_11:6635118-6635532:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2529296875	2	420.252903	838.491253	0.12106	5.0875E-05	-0.18773	-7.8896E-05	-0.066676	-2.8021E-05	420.25270208680973	57.889	0.99854	57.871	57.606	58.605	-0.0172					82	36	3	0	0	0	0.2705	1	13954	13954		34.187	0	1	2411100			51198	9213	29171	29172	62870	62870					0.06554703731376321
VAHVVQGP	8	Unmodified	_VAHVVQGP_					0	0	0			REV__ENST00000263270.10_1_19:47349331-47354039:-|nuORF	REV__ENST00000263270.10_1_19:47349331-47354039:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2563781738281	2	403.729595	805.444637	0.16504	6.6632E-05	0.29883	0.00012065	0.46387	0.00018728	403.7296213282853	32.316	0.54862	32.371	32.097	32.645	0.055309					42	19	3	0	0	0	0.34319	1	6214	6214		2.5775	0	1	442840	+		51199	19618	29172	29173	62871	62871					0.03413263900097263
VAHYTGLYFDE	11	Unmodified	_VAHYTGLYFDE_					0	0	0			REV__ENSG00000188991|ENST00000344941|SLC15A5	REV__ENSG00000188991|ENST00000344941|SLC15A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.88409423828125	3	438.871549	1313.59282	0.14971	6.5706E-05	-0.86069	-0.00037773	-0.71097	-0.00031202	438.8713883799121	30.281	0.6176	30.281	29.97	30.587	0					46	21	3	0	0	0	0.28246	3	5521	5472;5521;5572		23.801	16.324	1	330390	+		51200	18587	29173	29174	62872;62873;62874	62873					-0.0514351442741372
VAHYTGLYFDE	11	Unmodified	_VAHYTGLYFDE_					0	0	0			REV__ENSG00000188991|ENST00000344941|SLC15A5	REV__ENSG00000188991|ENST00000344941|SLC15A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.8838806152344	3	438.871549	1313.59282	0.13594	5.966E-05	-1.1353	-0.00049824	-0.99933	-0.00043858	438.87141609795077	30.276	0.70155	30.304	29.964	30.665	0.027946					54	24	3	0	0	0	0.28246	3	5500	5454;5500;5550		23.801	14.257	1	327440	+		51201	18587	29173	29174	62875;62876;62877	62876					-0.0514351442741372
VAHYTGLYFDE	11	Unmodified	_VAHYTGLYFDE_					0	0	0			REV__ENSG00000188991|ENST00000344941|SLC15A5	REV__ENSG00000188991|ENST00000344941|SLC15A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.8841552734375	3	438.871549	1313.59282	-0.21811	-9.5724E-05	-1.5287	-0.00067088	-1.7468	-0.00076661	438.87138603606144	30.228	0.68179	30.255	29.987	30.669	0.027157					63	23	4	0	0	0	0.33902	2	5515	5515;5558		18.721	10.566	1	294040	+		51202	18587	29173	29174	62878;62879	62878					-0.0514351442741372
VAHYTGLYFDE	11	Unmodified	_VAHYTGLYFDE_					0	0	0			REV__ENSG00000188991|ENST00000344941|SLC15A5	REV__ENSG00000188991|ENST00000344941|SLC15A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.88421630859375	3	438.871549	1313.59282	-0.21811	-9.5724E-05	-1.5287	-0.00067088	-1.7468	-0.00076661	438.87138603606144	30.228	0.68179	30.255	29.987	30.669	0.027157					63	23	4	0	0	0	0.3322	1	5612	5612		4.7159	1.1289	1	294040	+		51203	18587	29173	29174	62880	62880					-0.0514351442741372
VAHYTGLYFDE	11	Unmodified	_VAHYTGLYFDE_					0	0	0			REV__ENSG00000188991|ENST00000344941|SLC15A5	REV__ENSG00000188991|ENST00000344941|SLC15A5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	438.871549	1313.59282	0.14971	6.5706E-05	-0.86069	-0.00037773	-0.71097	-0.00031202	438.8713883799121	30.281	0.6176	30.281	29.97	30.587	0	0.0014021	0.00026181	NaN	23.801	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330390	+		51204	18587	29173	29174							-0.0514351442741372
VAHYTGLYFDE	11	Unmodified	_VAHYTGLYFDE_					0	0	0			REV__ENSG00000188991|ENST00000344941|SLC15A5	REV__ENSG00000188991|ENST00000344941|SLC15A5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	438.871549	1313.59282	0.13594	5.966E-05	-1.1353	-0.00049824	-0.99933	-0.00043858	438.87141609795077	30.276	0.70155	30.304	29.964	30.665	0.027946	0.023514	-9.9717E-05	NaN	23.801	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327440	+		51205	18587	29173	29174							-0.0514351442741372
VAIGLSRNL	9	Unmodified	_VAIGLSRNL_					0	0	0			REV__ENSG00000179023|ENST00000400664|KLHDC7A	REV__ENSG00000179023|ENST00000400664|KLHDC7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7718505859375	2	471.790184	941.565815	-0.019758	-9.3219E-06	-1.286	-0.0006067	-1.3057	-0.00061602	471.7895712538843	23.143	0.47175	23.056	22.853	23.325	-0.08761					28	16	2	0	0	0	0.25938	1	3406	3406		1.8442	0	1	56545	+		51206	18057	29174	29175	62881	62881					0.0926946654275298
VAIGLSRNL	9	Unmodified	_VAIGLSRNL_					0	0	0			REV__ENSG00000179023|ENST00000400664|KLHDC7A	REV__ENSG00000179023|ENST00000400664|KLHDC7A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	471.790184	941.565815	-0.14909	-7.0337E-05	-0.49379	-0.00023297	-0.64288	-0.0003033	471.78997541279324	23.052	0.37871	23.052	22.845	23.224	0	-0.013755	0.00048075	NaN	1.8442	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48966	+		51207	18057	29174	29175							0.0926946654275298
VAIKMKLF	8	Unmodified	_VAIKMKLF_					0	0	0			REV__CCDC146|p.E688V|1|0.23|ENSG00000135205|chr7:77282700-77282700|A/T|missense_variant	REV__CCDC146|p.E688V|1|0.23|ENSG00000135205|chr7:77282700-77282700|A/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.7784423828125	2	475.298799	948.583045	0.48659	0.00023128	0.11881	5.6469E-05	0.6054	0.00028775	475.2988100155438	77.613	0.86228	77.613	77.228	78.09	0					48	31	2	0	0	0	0.34297	1	19957	19957		6.3541	0	1	144480	+		51208	13139	29175	29176	62882	62882					0.10669670824211153
VAIKMKLF	8	Unmodified	_VAIKMKLF_					0	0	0			REV__CCDC146|p.E688V|1|0.23|ENSG00000135205|chr7:77282700-77282700|A/T|missense_variant	REV__CCDC146|p.E688V|1|0.23|ENSG00000135205|chr7:77282700-77282700|A/T|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	475.298799	948.583045	0.59521	0.0002829	-0.13736	-6.5288E-05	0.45785	0.00021761	475.2987319620148	77.608	0.7659	77.663	77.346	78.112	0.055412	0.025065	-9.3439E-05	NaN	6.3541	39	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145700	+		51209	13139	29175	29176							0.10669670824211153
VAILADPPH	9	Unmodified	_VAILADPPH_					0	0	0			REV__nc|ENSG00000010438|P35030-4|PRSS3	REV__nc|ENSG00000010438|P35030-4|PRSS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.57281494140625	2	466.763635	931.512717	0.21743	0.00010149	-2.8087	-0.001311	-2.5913	-0.0012095	466.76384105410204	74.933	0.55682	74.933	74.679	75.235	0					26	19	2	0	0	0	0.24739	1	19291	19291		13.508	0.97634	1	122030	+		51210	22876	29176	29177	62883	62883					0.04422088760088627
VAILPAYIS	9	Unmodified	_VAILPAYIS_					0	0	0			REV__ENSG00000107518|ENST00000355044|ATRNL1	REV__ENSG00000107518|ENST00000355044|ATRNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.26507568359375	2	473.784036	945.553519	-0.18798	-8.9061E-05	-4.0596	-0.0019234	-4.2475	-0.0020124	473.7819223276188	34.459	0.27885	34.536	34.308	34.587	0.077377					11	9	2	0	0	0	0.19839	1	6735	6735		28.487	0	1	67203	+		51211	14554	29177	29178	62884	62884					0.07856430079709753
VAIPRFHM	8	Unmodified	_VAIPRFHM_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.290771484375	2	485.768197	969.521842	0.31203	0.00015158	3.1934	0.0015513	3.5055	0.0017028	485.7699282301631	20.505	0.56744	20.505	20.285	20.853	0					30	19	3	0	0	0	0.33245	1	2567	2567		19.439	0.18201	1	130560			51212	2311	29178	29179	62885	62885					0.035861588447801296
VAISECHTL	9	Unmodified	_VAISECHTL_					0	0	0		ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7611083984375	2	486.744585	971.474617	0.30528	0.00014859	0.42972	0.00020916	0.735	0.00035776	486.74469404596886	30.517	0.52598	30.517	30.255	30.781	0					33	18	2	0	0	0	0.21905	1	5645	5645		23.148	9.6405	1	292230			51213	5364	29179	29180	62886	62886					-0.012261652168717774
VAISELLGML	10	Unmodified	_VAISELLGML_					0	0	0			REV__ENSG00000181045|ENST00000361193|SLC26A11	REV__ENSG00000181045|ENST00000361193|SLC26A11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3040161132812	2	523.301736	1044.58892	0.6565	0.00034355	3.1317	0.0016388	3.7882	0.0019824	523.3033941198248	84.283	0.48891	84.36	84.097	84.586	0.077095					25	19	2	0	0	0	0.31847	1	22042	22042		6.7232	0	1	121780	+		51214	18134	29180	29181	62887	62887					0.06840724545236299
VAISMATLPTV	11	Unmodified	_VAISMATLPTV_					0	0	0		ENSG00000187918|ENST00000641930|OR51I2	ENSG00000187918|ENST00000641930|OR51I2	ENSG00000187918|ENST00000641930|OR51I2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.809814453125	2	551.812467	1101.61038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.374	1	23.374	22.874	23.874	0								0	0	0	0.38126	1	3428	3428		1.1933	0.39971	1				51215	7719	29181	29182	62888	62888					0.06364109573928545
VAKAVTQAL	9	Unmodified	_VAKAVTQAL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.2690734863281	2	450.779285	899.544017	0.3201	0.00014429	-1.6481	-0.00074291	-1.328	-0.00059862	450.7786488626004	29.985	0.41991	29.985	29.774	30.194	0					37	14	4	0	0	0	0.060198	1	5419	5419		71.708	20.078	1	754630			51216	4024	29182	29183	62889	62889					0.09022661794165288
VAKAVTQAL	9	Unmodified	_VAKAVTQAL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.77923583984375	2	450.779285	899.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.906	1	29.918	29.418	30.418	0.012266								0	0	0	0.0001189	1	5409	5409		114.19	27.855	1				51217	4024	29182	29183	62890	62890					0.09022661794165288
VAKGRHGRTN	10	Unmodified	_VAKGRHGRTN_					0	0	0			REV__nc|ENSG00000166532|Q9ULI2-2|RIMKLB	REV__nc|ENSG00000166532|Q9ULI2-2|RIMKLB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2540283203125	2	548.310138	1094.60572	0.47763	0.00026189	2.2315	0.0012236	2.7092	0.0014855	548.3111777407937	22.13	0.42831	22.029	21.804	22.233	-0.10034					21	15	2	0	0	0	0.32072	1	3003	3003		1.1933	0	1	102520	+		51218	17328	29183	29184	62891	62891					0.06220406266038481
VAKNIVAKRRS	11	Unmodified	_VAKNIVAKRRS_					0	0	0		nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	nc|ENSG00000107731|Q8IZJ1-2|UNC5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.5977478027344	3	414.598206	1240.77279	0.29452	0.00012211	-0.82692	-0.00034284	-0.53241	-0.00022073	414.59754110781347	95.765	2.2052	95.761	94.49	96.695	-0.0038223					369	209	3	0	0	0	0.42762	1	25589	25589		3.8459	0	1	1304900			51219	2141	29184	29185	62892	62892					0.16203254090919472
VAKSNRRV	8	Unmodified	_VAKSNRRV_					0	0	0			REV__ENST00000541967.1_1_12:49349986-49350821:-|nuORF	REV__ENST00000541967.1_1_12:49349986-49350821:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2856750488281	2	465.2856	928.556647	0.064692	3.01E-05	0.45458	0.00021151	0.51927	0.00024161	465.2858580799787	82.268	1.1963	82.268	81.586	82.782	0					60	45	2	0	0	0	0.46022	1	21449	21449		2.3027	0	1	353100	+		51220	22133	29185	29186	62893	62893					0.08951117977085232
VAKTAREQYVF	11	Unmodified	_VAKTAREQYVF_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2677917480469	3	437.906705	1310.69829	0.097677	4.2774E-05	2.5869	0.0011328	2.6845	0.0011756	438.24237763157686	46.091	0.38963	46.091	45.832	46.222	0					18	13	2	0	0	0	0.33094	1	10303	10303		2.6312	1.1761	1	205350	+		51221	18808	29186	29187	62894	62894					0.05536446488895308
VAKTHNGF	8	Unmodified	_VAKTHNGF_					0	0	0			REV__ENSG00000115275|ENST00000448666|MOGS	REV__ENSG00000115275|ENST00000448666|MOGS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2676696777344	2	437.232502	872.450451	0.20607	9.0102E-05	1.5728	0.00068769	1.7789	0.00077779	437.2332239669641	45.215	1.479	45.284	44.513	45.992	0.068569					73	52	3	0	0	0	0.34046	1	10189	10189		9.3474	4.1168	1	436740	+		51222	14871	29187	29188	62895	62895					0.009123624117592044
VAKTHNGF	8	Unmodified	_VAKTHNGF_					0	0	0			REV__ENSG00000115275|ENST00000448666|MOGS	REV__ENSG00000115275|ENST00000448666|MOGS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	437.232502	872.450451	0.15544	6.7965E-05	1.7559	0.00076773	1.9113	0.00083569	437.23324961360913	45.269	1.6001	45.334	44.408	46.008	0.065048	0.025167	5.3718E-05	NaN	9.3474	84	58	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420360	+		51223	14871	29187	29188							0.009123624117592044
VAKVMFAIL	9	Unmodified	_VAKVMFAIL_					0	0	0			REV__ENST00000296885.7_1_6:88117749-88144792:+|nuORF	REV__ENST00000296885.7_1_6:88117749-88144792:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3040771484375	2	496.304081	990.59361	0.356	0.00017669	-0.097131	-4.8207E-05	0.25887	0.00012848	496.303888308668	73.998	3.3109	74.051	73.17	76.481	0.052361					303	118	4	0	0	0	0.32415	1	19445	19445		5.2307	5.2307	1	3943000	+		51224	19317	29188	29189	62896	62896					0.09793653478641318
VALARALFI	9	Unmodified	_VALARALFI_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.3133239746094	2	487.313295	972.612037	0.34857	0.00016986	-0.066042	-3.2183E-05	0.28253	0.00013768	487.3131876662152	65.693	0.51344	65.782	65.46	65.973	0.088882					37	18	3	0	0	0	0.07432	1	16397	16397		43.858	9.7559	1	387060			51225	557	29189	29190	62897	62897					0.12463531444836917
VALARALFI	9	Unmodified	_VALARALFI_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	487.313295	972.612037	0.52086	0.00025382	-0.25592	-0.00012471	0.26495	0.00012911	487.31309507379456	65.771	0.43697	65.771	65.518	65.955	0	0.0015264	-0.00010377	NaN	43.858	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353500			51226	557	29189	29190							0.12463531444836917
VALARALFI	9	Unmodified	_VALARALFI_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	487.313295	972.612037	0.46626	0.00022721	-0.13139	-6.4027E-05	0.33487	0.00016319	487.3131584660583	65.767	0.65367	65.756	65.348	66.002	-0.011337	-0.013987	1.7598E-05	NaN	43.858	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393130			51227	557	29189	29190							0.12463531444836917
VALEHFVLV	9	Unmodified	_VALEHFVLV_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8026733398438	2	513.80276	1025.59097	0.33319	0.00017119	-0.50482	-0.00025938	-0.17163	-8.8185E-05	513.8022864528356	66.334	1.2954	66.417	65.86	67.156	0.083832					102	46	4	0	0	0	0.16284	1	16599	16599		37.974	11.09	1	675050			51228	2998	29190	29191	62898	62898					0.0791952134532039
VALEHFVLV	9	Unmodified	_VALEHFVLV_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8028564453125	2	513.80276	1025.59097	0.16607	8.5328E-05	-0.45547	-0.00023402	-0.28939	-0.00014869	513.8024289971988	66.459	0.77875	66.445	66.091	66.869	-0.013588					73	28	4	0	0	0	0.1524	1	16615	16615		39.957	13.074	1	580900			51229	2998	29190	29191	62899	62899					0.0791952134532039
VALGVFMTI	9	Oxidation (M)	_VALGVFM(Oxidation (M))TI_		VALGVFM(1)TI		VALGVFM(150)TI	0	0	1		GAL3ST4|p.L216Pfs*106|1|0.19|ENSG00000197093|chr7:100160739-100160742|GGCA/-|frameshift_variant;ENSG00000197093|ENST00000360039|GAL3ST4	GAL3ST4|p.L216Pfs*106|1|0.19|ENSG00000197093|chr7:100160739-100160742|GGCA/-|frameshift_variant	GAL3ST4|p.L216Pfs*106|1|0.19|ENSG00000197093|chr7:100160739-100160742|GGCA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7703552246094	2	483.770071	965.52559	0.42042	0.00020339	0.16166	7.8206E-05	0.58208	0.00028159	483.7700079008852	77.195	1.1727	77.195	76.782	77.955	0					123	43	4	0	0	0	2.3185E-05	3	19881	19881;19929;19982		153.26	99.687	1	3369700			51230	7928	29191	29192	62900;62901;62902	62900		868			0.04144783827973697
VALGVFMTI	9	Oxidation (M)	_VALGVFM(Oxidation (M))TI_		VALGVFM(1)TI		VALGVFM(150)TI	0	0	1		GAL3ST4|p.L216Pfs*106|1|0.19|ENSG00000197093|chr7:100160739-100160742|GGCA/-|frameshift_variant;ENSG00000197093|ENST00000360039|GAL3ST4	GAL3ST4|p.L216Pfs*106|1|0.19|ENSG00000197093|chr7:100160739-100160742|GGCA/-|frameshift_variant	GAL3ST4|p.L216Pfs*106|1|0.19|ENSG00000197093|chr7:100160739-100160742|GGCA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7701416015625	2	483.770071	965.52559	0.37537	0.00018159	0.17855	8.6379E-05	0.55393	0.00026797	483.77004097972343	77.112	1.6268	77.168	76.785	78.412	0.05542					153	58	4	0	0	0	2.3185E-05	4	19894	19845;19894;19946;19997		153.26	99.687	1	2748600			51231	7928	29191	29192	62903;62904;62905;62906	62904		868			0.04144783827973697
VALGVFMTI	9	Oxidation (M)	_VALGVFM(Oxidation (M))TI_		VALGVFM(1)TI		VALGVFM(150)TI	0	0	1		GAL3ST4|p.L216Pfs*106|1|0.19|ENSG00000197093|chr7:100160739-100160742|GGCA/-|frameshift_variant;ENSG00000197093|ENST00000360039|GAL3ST4	GAL3ST4|p.L216Pfs*106|1|0.19|ENSG00000197093|chr7:100160739-100160742|GGCA/-|frameshift_variant	GAL3ST4|p.L216Pfs*106|1|0.19|ENSG00000197093|chr7:100160739-100160742|GGCA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.770263671875	2	483.770071	965.52559	0.62673	0.00030319	0.015712	7.6012E-06	0.64245	0.0003108	483.7699203084829	77.231	1.7503	77.199	76.37	78.121	-0.031334					141	63	4	0	0	0	2.3185E-05	3	19920	19869;19920;19975		153.26	99.687	1	2740300			51232	7928	29191	29192	62907;62908;62909	62908		868			0.04144783827973697
VALHFSLLQLP	11	Unmodified	_VALHFSLLQLP_					0	0	0			REV__ENSG00000131459|ENST00000253778|GFPT2	REV__ENSG00000131459|ENST00000253778|GFPT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.266357421875	3	413.248291	1236.72304	0.056689	2.3426E-05	0.75067	0.00031021	0.80735	0.00033364	413.58185452145864	16.759	0.21894	16.645	16.476	16.695	-0.11434					12	7	2	0	0	0	0.33202	1	1401	1401		5.0475	0.64137	1	15020	+		51233	15514	29192	29193	62910	62910					0.11415126362294359
VALHTPPP	8	Unmodified	_VALHTPPP_					0	0	0		ENST00000559664.5_1_15:34629408-34629573:-|nuORF	ENST00000559664.5_1_15:34629408-34629573:-|nuORF	ENST00000559664.5_1_15:34629408-34629573:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.5627746582031	2	416.239796	830.465038	-0.21911	-9.1202E-05	0.024697	1.028E-05	-0.19441	-8.0922E-05	416.2396163350577	23.45	0.41909	23.45	23.25	23.669	0					19	14	2	0	0	0	0.34185	1	3482	3482		10.183	3.8293	1	21777			51234	11887	29193	29194	62911	62911					0.04302434559906487
VALKNRVL	8	Unmodified	_VALKNRVL_					0	0	0			REV__ENSG00000138075|ENST00000405322|ABCG5	REV__ENSG00000138075|ENST00000405322|ABCG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7933044433594	2	456.803094	911.591636	0.47931	0.00021895	-0.16492	-7.5337E-05	0.31439	0.00014362	456.80306005975945	33.863	0.2438	33.863	33.753	33.997	0					13	8	2	0	0	0	0.4419	1	6596	6596		8.5933	0	1	59268	+		51235	15899	29194	29195	62912	62912					0.1323036078503037
VALKNRVL	8	Unmodified	_VALKNRVL_					0	0	0			REV__ENSG00000138075|ENST00000405322|ABCG5	REV__ENSG00000138075|ENST00000405322|ABCG5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	456.803094	911.591636	0.47931	0.00021895	-0.16492	-7.5337E-05	0.31439	0.00014362	456.80306005975945	33.863	0.2438	33.863	33.753	33.997	0	0.014603	-0.00025062	NaN	8.5933	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59268	+		51236	15899	29194	29195							0.1323036078503037
VALKNRVL	8	Unmodified	_VALKNRVL_					0	0	0			REV__ENSG00000138075|ENST00000405322|ABCG5	REV__ENSG00000138075|ENST00000405322|ABCG5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	456.803094	911.591636	0.011446	5.2288E-06	0.33548	0.00015325	0.34693	0.00015848	456.8032605813903	33.767	0.28341	33.834	33.711	33.995	0.066704	-0.014603	0.00020655	NaN	8.5933	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109640	+		51237	15899	29194	29195							0.1323036078503037
VALPGEVIK	9	Unmodified	_VALPGEVIK_					0	0	0		ENST00000521905.1_1_8:96281101-96622903:+|nuORF	ENST00000521905.1_1_8:96281101-96622903:+|nuORF	ENST00000521905.1_1_8:96281101-96622903:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.8006591796875	2	463.289485	924.564418	0.36274	0.00016805	-0.36826	-0.00017061	-0.0055211	-2.5579E-06	463.28918758478756	37.598	0.36507	37.598	37.342	37.707	0					20	12	2	0	0	0	0.23007	1	7749	7749		19.257	3.4098	1	171250			51238	11495	29195	29196	62913	62913					0.0991183245398588
VALPGEVIK	9	Unmodified	_VALPGEVIK_					0	0	0		ENST00000521905.1_1_8:96281101-96622903:+|nuORF	ENST00000521905.1_1_8:96281101-96622903:+|nuORF	ENST00000521905.1_1_8:96281101-96622903:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.8006591796875	2	463.289485	924.564418	0.09512	4.4068E-05	-0.12466	-5.7753E-05	-0.029539	-1.3685E-05	463.28935660978783	37.534	0.43304	37.621	37.384	37.817	0.08741					27	15	2	0	0	0	0.23007	1	7719	7719		19.257	3.4098	1	156040			51239	11495	29195	29196	62914	62914					0.0991183245398588
VALPGEVIK	9	Unmodified	_VALPGEVIK_					0	0	0		ENST00000521905.1_1_8:96281101-96622903:+|nuORF	ENST00000521905.1_1_8:96281101-96622903:+|nuORF	ENST00000521905.1_1_8:96281101-96622903:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.8007507324219	2	463.289485	924.564418	0.20921	9.6923E-05	-0.097397	-4.5123E-05	0.11181	5.1799E-05	463.2893535293485	37.449	0.45253	37.542	37.363	37.816	0.093014					28	16	2	0	0	0	0.23767	1	7701	7701		18.146	3.3081	1	171170			51240	11495	29195	29196	62915	62915					0.0991183245398588
VALPNKRVL	9	Unmodified	_VALPNKRVL_					0	0	0			REV__ENSG00000101323|ENST00000378789|HAO1	REV__ENSG00000101323|ENST00000378789|HAO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.292724609375	2	505.329476	1008.6444	0.4002	0.00020224	-0.13868	-7.0078E-05	0.26153	0.00013216	505.329395223489	36.822	0.62264	36.909	36.682	37.305	0.08741					50	22	3	0	0	0	0.24311	1	7600	7600		11.64	3.7301	1	928090	+		51241	14262	29196	29197	62916	62916					0.14042318847839397
VALPVFLVI	9	Unmodified	_VALPVFLVI_					0	0	0		nc|ENSG00000127022|P27824-2|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-2|CANX	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8207092285156	2	485.820421	969.62629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.74	1	103.74	103.24	104.24	0								0	0	0	0.17818	1	27553	27553		28.173	0	1				51242	3303	29197	29198	62917	62917					0.14026183873124864
VALPVFLVI	9	Unmodified	_VALPVFLVI_					0	0	0		nc|ENSG00000127022|P27824-2|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-2|CANX	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.82073974609375	2	485.820421	969.62629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.9	1	103.9	103.4	104.4	0								0	0	0	0.14247	1	27592	27592		36.466	8.2929	1				51243	3303	29197	29198	62918	62918					0.14026183873124864
VALPVFLVI	9	Unmodified	_VALPVFLVI_					0	0	0		nc|ENSG00000127022|P27824-2|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-2|CANX	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8207702636719	2	485.820421	969.62629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.75	1	103.76	103.26	104.26	0.0082703								0	0	0	0.14247	1	27568	27568		36.466	8.2929	1				51244	3303	29197	29198	62919	62919					0.14026183873124864
VALPVLMNI	9	Oxidation (M)	_VALPVLM(Oxidation (M))NI_		VALPVLM(1)NI		VALPVLM(54)NI	0	0	1		nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B;ENST00000507937.1_1_5:177574516-177575030:+|nuORF	nc|ENSG00000145916|Q96G75-2|RMND5B	nc|ENSG00000145916|Q96G75-2|RMND5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.78173828125	2	493.291171	984.567789	0.83284	0.00041083	-0.96222	-0.00047465	-0.12937	-6.3818E-05	493.2908325626079	77.7	0.65709	77.669	77.404	78.061	-0.031334					39	23	2	0	0	0	0.048175	1	20032	20032		53.576	28.902	1	131280			51245	4680	29198	29199	62920	62920		588			0.07488759236366604
VALPVYLLI	9	Unmodified	_VALPVYLLI_					0	0	0		nc|ENSG00000185808|P57054-3|PIGP;ENSG00000185808|ENST00000360525|PIGP;nc|ENSG00000185808|P57054|PIGP	nc|ENSG00000185808|P57054-3|PIGP	nc|ENSG00000185808|P57054-3|PIGP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.82574462890625	2	500.825704	999.636855	-0.044927	-2.25E-05	0.33445	0.0001675	0.28953	0.000145	500.82580036679536	99.854	0.59886	99.854	99.614	100.21	0					163	78	3	0	0	0	0.041522	3	26677	26677;26686;26705		56.048	19.582	1	397050			51246	7558	29199	29200	62921;62922;62923	62921					0.13702166527559712
VALPVYLLI	9	Unmodified	_VALPVYLLI_					0	0	0		nc|ENSG00000185808|P57054-3|PIGP;ENSG00000185808|ENST00000360525|PIGP;nc|ENSG00000185808|P57054|PIGP	nc|ENSG00000185808|P57054-3|PIGP	nc|ENSG00000185808|P57054-3|PIGP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8258056640625	2	500.825704	999.636855	0.13291	6.6566E-05	0.088416	4.4281E-05	0.22133	0.00011085	500.82568489942264	99.747	0.58627	99.786	99.511	100.1	0.038994					175	75	3	0	0	0	0.017826	3	26672	26640;26648;26672		67.413	21.663	1	449240			51247	7558	29199	29200	62924;62925;62926	62926					0.13702166527559712
VALPVYLLI	9	Unmodified	_VALPVYLLI_					0	0	0		nc|ENSG00000185808|P57054-3|PIGP;ENSG00000185808|ENST00000360525|PIGP;nc|ENSG00000185808|P57054|PIGP	nc|ENSG00000185808|P57054-3|PIGP	nc|ENSG00000185808|P57054-3|PIGP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.82586669921875	2	500.825704	999.636855	0.28601	0.00014324	-0.083492	-4.1815E-05	0.20252	0.00010143	500.82562712855446	99.872	0.57641	99.865	99.64	100.22	-0.006897					170	78	3	0	0	0	0.041522	2	26726	26726;26739		56.048	19.582	1	448780			51248	7558	29199	29200	62927;62928	62927					0.13702166527559712
VALPVYLLI	9	Unmodified	_VALPVYLLI_					0	0	0		nc|ENSG00000185808|P57054-3|PIGP;ENSG00000185808|ENST00000360525|PIGP;nc|ENSG00000185808|P57054|PIGP	nc|ENSG00000185808|P57054-3|PIGP	nc|ENSG00000185808|P57054-3|PIGP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	500.825704	999.636855	0.13375	6.6987E-05	-0.76734	-0.0003843	-0.63359	-0.00031732	500.82556293245773	99.466	0.020996	99.517	99.502	99.523	0.050888	-0.16849	-0.0010891	NaN	56.048	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22385			51249	7558	29199	29200							0.13702166527559712
VALQQALNN	9	Unmodified	_VALQQALNN_					0	0	0			REV__CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant	REV__CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2884826660156	2	485.769448	969.524344	-0.10701	-5.1984E-05	-2.1839	-0.0010609	-2.2909	-0.0011128	485.7695940890119	13.226	0.39438	13.159	12.993	13.388	-0.067496					23	13	3	0	0	0	0.25988	1	357	357		3.9444	1.3669	1	37511	+		51250	13290	29200	29201	62929	62929					0.03836285783427229
VALQQALNN	9	Unmodified	_VALQQALNN_					0	0	0			REV__CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant	REV__CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	485.769448	969.524344	-0.092923	-4.5139E-05	-1.6928	-0.00082233	-1.7858	-0.00086747	485.76965776598377	13.18	0.33388	13.18	13.031	13.365	0	0.0064343	-0.001329	NaN	3.9444	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45985	+		51251	13290	29200	29201							0.03836285783427229
VALQWPIR	8	Unmodified	_VALQWPIR_					0	0	0			REV__ENST00000526535.1_1_11:111233912-111234038:-|nuORF	REV__ENST00000526535.1_1_11:111233912-111234038:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.79522705078125	2	491.795269	981.575986	0.50681	0.00024925	-0.070514	-3.4679E-05	0.4363	0.00021457	491.7950751550695	41.414	1.4084	41.511	41.259	42.668	0.096626					104	53	3	0	0	0	0.42446	2	9027	8974;9027		14.582	4.3983	1	20710000	+		51252	21962	29201	29202	62930;62931	62931					0.08446074267988024
VALRVPSI	8	Unmodified	_VALRVPSI_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;RNF145|p.L221Nfs*39|1|0.29|ENSG00000145860|chr5:159174119-159174120|-/GGACATT|frameshift_variant	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.77630615234375	2	427.776545	853.538538	0.18705	8.0016E-05	-0.36785	-0.00015736	-0.1808	-7.734E-05	427.7762903224434	54.241	1.2199	54.241	53.516	54.736	0					99	44	3	0	0	0	0.011048	2	12828	12828;12872		115.69	7.695	1	1084400			51253	4675	29202	29203	62932;62933	62932					0.10590983002373378
VALRVPSI	8	Unmodified	_VALRVPSI_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;RNF145|p.L221Nfs*39|1|0.29|ENSG00000145860|chr5:159174119-159174120|-/GGACATT|frameshift_variant	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.77642822265625	2	427.776545	853.538538	0.072261	3.0912E-05	-0.2172	-9.2912E-05	-0.14494	-6.2E-05	427.77636696430653	54.27	1.1301	54.333	53.592	54.722	0.063206					95	42	3	0	0	0	0.011048	2	12794	12794;12881		115.69	7.695	1	886640			51254	4675	29202	29203	62934;62935	62934					0.10590983002373378
VALRVPSI	8	Unmodified	_VALRVPSI_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;RNF145|p.L221Nfs*39|1|0.29|ENSG00000145860|chr5:159174119-159174120|-/GGACATT|frameshift_variant	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.7763977050781	2	427.776545	853.538538	0.13407	5.7352E-05	-0.22157	-9.4782E-05	-0.087498	-3.743E-05	427.77634700845664	54.32	1.1906	54.304	53.63	54.821	-0.015923					87	42	3	0	0	0	0.011048	2	12878	12829;12878		115.69	7.695	1	1274300			51255	4675	29202	29203	62936;62937	62937					0.10590983002373378
VALSAYYL	8	Unmodified	_VALSAYYL_					0	0	0		GNAI2|p.D232Y|1|0.29|ENSG00000114353|chr3:50256823-50256823|G/T|missense_variant	GNAI2|p.D232Y|1|0.29|ENSG00000114353|chr3:50256823-50256823|G/T|missense_variant	GNAI2|p.D232Y|1|0.29|ENSG00000114353|chr3:50256823-50256823|G/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2472839355469	2	450.247286	898.48002	0.31419	0.00014146	-0.29933	-0.00013477	0.01486	6.6909E-06	450.2470469597522	67.744	0.91887	67.822	67.546	68.465	0.078041					65	32	3	0	0	0	0.42446	1	17155	17155		14.582	4.3983	1	1125800			51256	12349	29203	29204	62938	62938					0.026718816372408583
VALSDLDVSPL	11	Unmodified	_VALSDLDVSPL_					0	0	0			REV__ENST00000481771.5_1_1:155179042-155180448:+|nuORF	REV__ENST00000481771.5_1_1:155179042-155180448:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.810546875	2	564.810979	1127.6074	-0.13577	-7.6687E-05	-0.025822	-1.4584E-05	-0.1616	-9.1271E-05	564.8106463410081	101.35	1.5746	101.35	100.8	102.38	0					669	218	4	0	0	0	0.46277	1	27033	27033		2.9952	0	1	791600	+		51257	17765	29204	29205	62939	62939					0.048705577207556416
VALSDLDVSPL	11	Unmodified	_VALSDLDVSPL_					0	0	0			REV__ENST00000481771.5_1_1:155179042-155180448:+|nuORF	REV__ENST00000481771.5_1_1:155179042-155180448:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	564.810979	1127.6074	-0.13577	-7.6687E-05	-0.025822	-1.4584E-05	-0.1616	-9.1271E-05	564.8106463410081	101.35	1.5746	101.35	100.8	102.38	0	0.088853	0.00035805	NaN	2.9952	669	218	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	791600	+		51258	17765	29204	29205							0.048705577207556416
VALSDLDVSPL	11	Unmodified	_VALSDLDVSPL_					0	0	0			REV__ENST00000481771.5_1_1:155179042-155180448:+|nuORF	REV__ENST00000481771.5_1_1:155179042-155180448:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.810979	1127.6074	0.15915	8.9891E-05	-0.3515	-0.00019853	-0.19235	-0.00010864	564.8105009083934	101.18	1.6958	101.2	100.56	102.26	0.027214	-0.052673	-9.8455E-06	NaN	2.9952	590	235	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1153300	+		51259	17765	29204	29205							0.048705577207556416
VALSDLDVSPL	11	Unmodified	_VALSDLDVSPL_					0	0	0			REV__ENST00000481771.5_1_1:155179042-155180448:+|nuORF	REV__ENST00000481771.5_1_1:155179042-155180448:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	564.810979	1127.6074	0.21074	0.00011903	-0.42881	-0.0002422	-0.21807	-0.00012317	564.8104715020186	101.23	1.6821	101.22	100.68	102.36	-0.0054779	-0.03618	-9.7179E-05	NaN	2.9952	540	237	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1271100	+		51260	17765	29204	29205							0.048705577207556416
VALSIRER	8	Unmodified	_VALSIRER_					0	0	0		ENST00000561081.5_1_15:71185020-71185149:+|nuORF	ENST00000561081.5_1_15:71185020-71185149:+|nuORF	ENST00000561081.5_1_15:71185020-71185149:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.287109375	2	472.287808	942.561064	0.44252	0.000209	-0.9204	-0.00043469	-0.47788	-0.0002257	472.2871160681627	84.969	2.3886	84.956	84.516	86.904	-0.012833					207	93	4	0	0	0	0.44569	1	22277	22277		7.2892	0	1	10825000			51261	11907	29205	29206	62940	62940					0.0874858239999412
VALSIRER	8	Unmodified	_VALSIRER_					0	0	0		ENST00000561081.5_1_15:71185020-71185149:+|nuORF	ENST00000561081.5_1_15:71185020-71185149:+|nuORF	ENST00000561081.5_1_15:71185020-71185149:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	472.287808	942.561064	0.31406	0.00014833	-0.97585	-0.00046088	-0.66179	-0.00031256	472.2870496322931	84.954	1.922	84.954	84.584	86.506	0	-0.0084949	-6.6023E-05	NaN	7.2892	155	74	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9110500			51262	11907	29205	29206							0.0874858239999412
VALSIRER	8	Unmodified	_VALSIRER_					0	0	0		ENST00000561081.5_1_15:71185020-71185149:+|nuORF	ENST00000561081.5_1_15:71185020-71185149:+|nuORF	ENST00000561081.5_1_15:71185020-71185149:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	472.287808	942.561064	0.40263	0.00019016	-0.86193	-0.00040708	-0.4593	-0.00021692	472.2871541306637	84.897	2.017	84.978	84.501	86.518	0.080879	0.01521	4.159E-05	NaN	7.2892	194	78	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9516300			51263	11907	29205	29206							0.0874858239999412
VALSPQFVYLN	11	Unmodified	_VALSPQFVYLN_					0	0	0			REV__ENST00000491074.5_1_2:183605037-183619453:+|nuORF	REV__ENST00000491074.5_1_2:183605037-183619453:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.8432006835938	2	625.842613	1249.67067	-0.33755	-0.00021125	1.2287	0.00076898	0.89116	0.00055773	625.8434330327993	65.106	0.56433	65.195	64.982	65.547	0.088875					49	20	3	0	0	0	0.37255	1	16232	16232		18.373	0	1	800490	+		51264	13839	29206	29207	62941	62941					0.055825432286837895
VALSPQFVYLN	11	Unmodified	_VALSPQFVYLN_					0	0	0			REV__ENST00000491074.5_1_2:183605037-183619453:+|nuORF	REV__ENST00000491074.5_1_2:183605037-183619453:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.84326171875	2	625.842613	1249.67067	-0.092743	-5.8043E-05	1.152	0.00072096	1.0592	0.00066292	625.843473209925	65.252	0.59012	65.241	65.022	65.612	-0.011337					48	21	3	0	0	0	0.28064	1	16245	16245		29.841	0	1	729310	+		51265	13839	29206	29207	62942	62942					0.055825432286837895
VALVIFWQAKF	11	Unmodified	_VALVIFWQAKF_					0	0	0			REV__ENSG00000213694|ENST00000358157|S1PR3	REV__ENSG00000213694|ENST00000358157|S1PR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2602233886719	3	441.26042	1320.75943	0.79229	0.0003496	-0.97377	-0.00042969	-0.18148	-8.0081E-05	441.2599196725915	56.314	0.70464	56.294	55.942	56.646	-0.019081					59	25	3	0	0	0	0.40701	1	13473	13473		10.315	2.8382	1	1223500	+		51266	19042	29207	29208	62943	62943					0.11188003258962453
VALWGRGL	8	Unmodified	_VALWGRGL_					0	0	0			REV__ENST00000426882.5_1_6:30294190-30294325:-|nuORF	REV__ENST00000426882.5_1_6:30294190-30294325:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.2471923828125	2	436.261062	870.507572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.847	1	34.923	34.423	35.423	0.075306								0	0	0	0.35779	1	6916	6916		11.114	0	1		+		51267	20908	29208	29209	62944	62944					0.06713829688146689
VAMRLMECTAC	11	Unmodified	_VAMRLMECTAC_					0	0	0		SACS|p.V4560L|1|0.04|ENSG00000151835|chr13:23330198-23330198|C/G|missense_variant	SACS|p.V4560L|1|0.04|ENSG00000151835|chr13:23330198-23330198|C/G|missense_variant	SACS|p.V4560L|1|0.04|ENSG00000151835|chr13:23330198-23330198|C/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5698547363281	3	409.84994	1226.52799	-0.20621	-8.4515E-05	4.4343	0.0018174	4.2281	0.0017329	409.850159077258	25.64	0.10972	25.584	25.482	25.592	-0.055931					5	3	2	0	0	0	0.33255	1	4112	4112		0.40827	0	1	12037			51268	23372	29209	29210	62945	62945					-0.07621195092519883
VANLLKSAF	9	Unmodified	_VANLLKSAF_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.24847412109375	2	481.78711	961.559667	-0.03237	-1.5595E-05	0.48802	0.00023512	0.45565	0.00021953	481.7871783852436	31.338	0.36512	31.381	31.209	31.574	0.042366					22	12	2	0	0	0	0.24739	1	5831	5831		8.5933	0	1	154140			51269	1211	29210	29211	62946	62946					0.07734948311235712
VANLLKSAF	9	Unmodified	_VANLLKSAF_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.2483215332031	2	481.78711	961.559667	0.22486	0.00010834	0.66789	0.00032178	0.89275	0.00043012	481.78724544876775	31.332	0.43695	31.373	31.042	31.479	0.040991					22	15	2	0	0	0	0.25811	1	5771	5771		5.2307	0	1	144730			51270	1211	29210	29211	62947	62947					0.07734948311235712
VANPDEQAW	9	Unmodified	_VANPDEQAW_					0	0	0			REV__nc|ENSG00000261236|Q14137-2|BOP1	REV__nc|ENSG00000261236|Q14137-2|BOP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.77783203125	2	515.235439	1028.45632	0.51387	0.00026476	-2.1204	-0.0010925	-1.6065	-0.00082773	515.2341906767501	86.273	0.31262	86.273	86.013	86.326	0					17	11	2	0	0	0	0.25526	1	22637	22637		4.3292	2.485	1	116390	+		51271	19283	29211	29212	62948	62948					-0.05676583867216323
VANRFHLRLEN	11	Unmodified	_VANRFHLRLEN_					0	0	0		nc|ENSG00000069702|Q03167-2|TGFBR3;ENSG00000069702|ENST00000212355|TGFBR3;ENST00000532540.5_1_1:92149298-92327033:-|nuORF	nc|ENSG00000069702|Q03167-2|TGFBR3	nc|ENSG00000069702|Q03167-2|TGFBR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.26422119140625	3	456.921349	1367.74222	0.39168	0.00017897	0.2331	0.00010651	0.62478	0.00028548	456.9212942921807	75.274	0.79734	75.242	74.951	75.749	-0.031479					74	29	4	0	0	0	0.43513	1	19247	19247		6.6235	1.9075	1	508760			51272	910	29212	29213	62949	62949					0.07305475705879871
VANSSLPLR	9	Unmodified	_VANSSLPLR_					0	0	0			REV__nc|ENSG00000127946|O00291-3|HIP1	REV__nc|ENSG00000127946|O00291-3|HIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.3025207519531	2	478.779816	955.545079	0.44514	0.00021312	0.20869	9.9914E-05	0.65383	0.00031304	478.78009308703867	44.487	0.40829	44.556	44.274	44.682	0.068569					17	14	2	0	0	0	0.24688	1	9856	9856		14.838	0	1	202810	+		51273	15355	29213	29214	62950	62950					0.06552876163095789
VANWTKDAQCL	11	Unmodified	_VANWTKDAQCL_					0	0	0			REV__nc|ENSG00000117308|Q14376-2|GALE	REV__nc|ENSG00000117308|Q14376-2|GALE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.87225341796875	3	416.872895	1247.59686	-1.1679	-0.00048687	-0.38224	-0.00015934	-1.5501	-0.00064621	416.8727102036832	34.907	0.9592	34.982	34.47	35.429	0.075302					54	34	2	0	0	0	0.26921	1	6938	6938		15.538	0	1	532450	+		51274	14964	29214	29215	62951	62951					-0.01703748205318334
VAPALHLL	8	Unmodified	_VAPALHLL_					0	0	0			REV__ENST00000327381.6_1_8:56015788-56270288:+|nuORF	REV__ENST00000327381.6_1_8:56015788-56270288:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.18896484375	2	417.265813	832.517074	0.25175	0.00010505	0.010833	4.5204E-06	0.26258	0.00010957	417.26565487534447	45.554	0.68338	45.554	45.291	45.974	0					62	24	4	0	0	0	0.31651	1	10296	10296		24.21	0	1	2103900	+		51275	20008	29215	29216	62952	62952					0.09411597973667085
VAPDGRLLG	9	Unmodified	_VAPDGRLLG_					0	0	0		ENSG00000128011|ENST00000248668|LRFN1	ENSG00000128011|ENST00000248668|LRFN1	ENSG00000128011|ENST00000248668|LRFN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.26116943359375	2	449.261259	896.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.859	1	41.859	41.359	42.359	0								0	0	0	0.22065	1	9060	9060		15.847	0	1				51276	3347	29216	29217	62953	62953					0.05557204617332445
VAPEKDRHPHL	11	Unmodified	_VAPEKDRHPHL_					0	0	0		ENST00000493306.1_1_9:110249379-110249688:-|nuORF	ENST00000493306.1_1_9:110249379-110249688:-|nuORF	ENST00000493306.1_1_9:110249379-110249688:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.9128723144531	3	433.570316	1297.68912	-0.39479	-0.00017117	0.29341	0.00012722	-0.10137	-4.3952E-05	433.57049455290644	14.885	0.58929	14.885	14.591	15.181	0					42	20	3	0	0	0	0.42346	1	864	864		4.1166	0	1	148320			51277	11200	29217	29218	62954	62954					0.05218097923216192
VAPKNKTGL	9	Unmodified	_VAPKNKTGL_					0	0	0			REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.77447509765625	2	464.284734	926.554916	0.22222	0.00010317	0.17843	8.2841E-05	0.40065	0.00018601	464.2847588891425	39.992	0.3427	40.084	39.858	40.2	0.09267					19	11	2	0	0	0	0.20651	1	8451	8451		14.838	0	1	280840	+		51278	14328	29218	29219	62955	62955					0.08870064168456793
VAPKPAVPP	9	Unmodified	_VAPKPAVPP_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2799987792969	2	438.271096	874.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.175	1	80.175	79.675	80.675	0								0	0	0	0.25631	1	20825	20825		4.3292	0	1		+		51279	17710	29219	29220	62956	62956					0.08535580628085881
VAPKPAVPP	9	Unmodified	_VAPKPAVPP_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2799987792969	2	438.271096	874.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.141	1	80.206	79.706	80.706	0.065094								0	0	0	0.24522	1	20803	20803		7.9102	0	1		+		51280	17710	29219	29220	62957	62957					0.08535580628085881
VAPKPAVPP	9	Unmodified	_VAPKPAVPP_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.2800598144531	2	438.271096	874.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.203	1	80.176	79.676	80.676	-0.026825								0	0	0	0.25631	1	20818	20818		4.3292	0	1		+		51281	17710	29219	29220	62958	62958					0.08535580628085881
VAPLPPLK	8	Unmodified	_VAPLPPLK_					0	0	0			REV__nc|ENSG00000124214|O95793-2|STAU1	REV__nc|ENSG00000124214|O95793-2|STAU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.8762512207031	2	417.776014	833.537475	0.027277	1.1396E-05	0.33624	0.00014047	0.36352	0.00015187	417.77604428273514	26.309	0.13642	26.271	26.153	26.29	-0.038671					5	4	2	0	0	0	0.34319	1	4314	4314		5.7604	0	1	31182	+		51282	15223	29220	29221	62959	62959					0.11404768633462936
VAPMIWNEISL	11	Unmodified	_VAPMIWNEISL_					0	0	0			REV__ENST00000511208.2_1_5:31534421-31538621:+|nuORF	REV__ENST00000511208.2_1_5:31534421-31538621:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.8934631347656	3	424.893408	1271.65839	-0.16111	-6.8453E-05	0.24824	0.00010548	0.087137	3.7024E-05	424.8933896139509	19.518	0.89531	19.402	19.005	19.9	-0.11592					91	30	4	0	0	0	0.37585	1	2325	2325		11.631	3.3449	1	395310	+		51283	13918	29221	29222	62960	62960					0.03343183493984725
VAPMIWNEISL	11	Unmodified	_VAPMIWNEISL_					0	0	0			REV__ENST00000511208.2_1_5:31534421-31538621:+|nuORF	REV__ENST00000511208.2_1_5:31534421-31538621:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.8933410644531	3	424.893408	1271.65839	-0.070767	-3.0068E-05	0.021058	8.9475E-06	-0.049709	-2.1121E-05	424.89334749267186	19.443	1.017	19.387	19.017	20.034	-0.055693					100	35	4	0	0	0	0.26921	1	2227	2227		15.538	0	1	476760	+		51284	13918	29221	29222	62961	62961					0.03343183493984725
VAPNVQRI	8	Unmodified	_VAPNVQRI_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF;nc|ENSG00000163694|A0AV96-2|RBM47	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.76910400390625	2	448.769252	895.52395	0.22272	9.995E-05	-0.32104	-0.00014407	-0.098315	-4.4121E-05	448.7689788783763	29.813	0.47229	29.825	29.56	30.032	0.012266					26	15	2	0	0	0	0.45169	1	5401	5401		5.2307	0.47466	1	137530			51285	5722	29222	29223	62962	62962					0.07200910854237463
VAPNVQRI	8	Unmodified	_VAPNVQRI_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF;nc|ENSG00000163694|A0AV96-2|RBM47	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7694396972656	2	448.769252	895.52395	-0.018326	-8.2243E-06	-0.067638	-3.0354E-05	-0.085964	-3.8578E-05	448.7692551792825	29.88	0.41614	29.893	29.653	30.069	0.013474					23	13	2	0	0	0	0.45169	1	5385	5385		5.2307	0.90143	1	136280			51286	5722	29222	29223	62963	62963					0.07200910854237463
VAPPVWVW	8	Unmodified	_VAPPVWVW_					0	0	0			REV__ENST00000174618.4_1_17:2289113-2289266:-|nuORF	REV__ENST00000174618.4_1_17:2289113-2289266:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.8210754394531	2	477.265813	952.517074	0.29413	0.00014038	0.095109	4.5392E-05	0.38924	0.00018577	477.26596210028436	29.024	0.42832	29.024	28.845	29.273	0					34	15	3	0	0	0	0.31651	1	5135	5135		17.087	17.087	1	215970	+		51287	19388	29223	29224	62964	62964					0.038915979736543704
VAPPVWVW	8	Unmodified	_VAPPVWVW_					0	0	0			REV__ENST00000174618.4_1_17:2289113-2289266:-|nuORF	REV__ENST00000174618.4_1_17:2289113-2289266:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.8211669921875	2	477.265813	952.517074	0.24331	0.00011613	0.2318	0.00011063	0.47512	0.00022676	477.26587635812587	29.018	0.7419	29.03	28.675	29.417	0.012266					42	25	2	0	0	0	0.31651	1	5127	5127		24.21	6.0636	1	221720	+		51288	19388	29223	29224	62965	62965					0.038915979736543704
VAPPVWVW	8	Unmodified	_VAPPVWVW_					0	0	0			REV__ENST00000174618.4_1_17:2289113-2289266:-|nuORF	REV__ENST00000174618.4_1_17:2289113-2289266:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.8211669921875	2	477.265813	952.517074	0.10795	5.1521E-05	0.013388	6.3895E-06	0.12134	5.791E-05	477.26590224588756	29.044	0.68167	29.058	28.619	29.3	0.013474					37	24	2	0	0	0	0.33618	1	5120	5120		17.087	4.555	1	236920	+		51289	19388	29223	29224	62966	62966					0.038915979736543704
VAPRVSAVSL	10	Unmodified	_VAPRVSAVSL_					0	0	0			REV__ENSG00000117448|ENST00000351829|AKR1A1	REV__ENSG00000117448|ENST00000351829|AKR1A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2728271484375	2	499.803291	997.59203	0.32361	0.00016174	-0.21872	-0.00010932	0.1049	5.2427E-05	499.80321039039865	42.296	0.79202	42.382	42.211	43.003	0.085197					73	28	4	0	0	0	0.28569	1	9179	9179		26.268	0	1	575690	+		51290	14968	29224	29225	62967	62967					0.09313735714226823
VAPVPQSFLGP	11	Unmodified	_VAPVPQSFLGP_					0	0	0			REV__nc|ENSG00000166886|Q15742-2|NAB2	REV__nc|ENSG00000166886|Q15742-2|NAB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3013916015625	2	556.310949	1110.60735	0.047329	2.633E-05	1.7677	0.0009834	1.815	0.0010097	556.3120274423457	61.233	1.0814	61.33	61.093	62.175	0.096989					106	39	3	0	0	0	0.25499	1	15209	15209		26.268	5.8145	1	1845000	+		51291	17345	29225	29226	62968	62968					0.0564660251143323
VAQAYYARDAL	11	Unmodified	_VAQAYYARDAL_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.9150695800781	3	414.215539	1239.62479	0.003486	1.444E-06	-1.4419	-0.00059725	-1.4384	-0.00059581	414.2150807911924	32.776	0.83598	32.776	32.5	33.336	0					59	29	3	0	0	0	0.32396	1	6250	6250		19.987	3.421	1	396530			51292	12694	29226	29227	62969	62969					0.014558980464244087
VAQAYYARDAL	11	Unmodified	_VAQAYYARDAL_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.91497802734375	3	414.215539	1239.62479	0.24099	9.9823E-05	-1.9545	-0.00080958	-1.7135	-0.00070976	414.2149181369159	32.698	0.89445	32.752	32.39	33.285	0.054371					46	32	2	0	0	0	0.32625	1	6268	6268		16.275	0	1	478260			51293	12694	29226	29227	62970	62970					0.014558980464244087
VAQEQHYNIL	10	Unmodified	_VAQEQHYNIL_					0	0	0			REV__AGL|p.I817Nfs*3|1|0.24|ENSG00000162688|chr1:99884350-99884351|-/A|frameshift_variant	REV__AGL|p.I817Nfs*3|1|0.24|ENSG00000162688|chr1:99884350-99884351|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.57171630859375	3	405.543655	1213.60914	-0.12971	-5.2602E-05	-1.0544	-0.0004276	-1.1841	-0.00048021	405.54318485992724	32.993	0.55044	33.048	32.765	33.316	0.054371					33	19	2	0	0	0	0.318	1	6261	6261		3.8763	0	1	167650	+		51294	13089	29227	29228	62971	62971					0.01087611529374044
VAQHRALA	8	Unmodified	_VAQHRALA_					0	0	0			REV__ENSG00000205903|ENST00000382252|ZNF316	REV__ENSG00000205903|ENST00000382252|ZNF316	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.2499084472656	2	433.253769	864.492984	-0.045518	-1.9721E-05	-0.040331	-1.7474E-05	-0.085849	-3.7194E-05	433.2537399093447	24.18	0.74144	24.107	23.756	24.498	-0.072559					61	24	3	0	0	0	0.45015	1	3590	3590		5.7604	0	1	484890	+		51295	19008	29228	29229	62972	62972					0.05531757539972659
VAQILLPA	8	Unmodified	_VAQILLPA_					0	0	0			REV__ENST00000591635.5_1_18:34124550-34298500:+|nuORF	REV__ENST00000591635.5_1_18:34124550-34298500:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.76708984375	2	412.765646	823.516739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.526	1	31.569	31.069	32.069	0.042364								0	0	0	0.37595	1	5902	5902		2.8892	0	1		+		51296	15701	29229	29230	62973	62973					0.0979217825380374
VAQKNYFNI	9	Unmodified	_VAQKNYFNI_					0	0	0		nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7932739257812	2	548.792924	1095.57129	0.71272	0.00039114	-0.28324	-0.00015544	0.42948	0.0002357	548.792896294341	46.988	1.3108	46.988	46.487	47.797	0					127	46	4	0	0	0	0.00094673	1	10617	10617		123.45	71.182	1	3240800			51297	12748	29230	29231	62974	62974					0.027331453345595946
VAQKNYFNI	9	Unmodified	_VAQKNYFNI_					0	0	0		nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7931518554688	2	548.792924	1095.57129	0.62263	0.00034169	-0.26944	-0.00014787	0.35318	0.00019382	548.7929305169524	46.751	1.3693	46.804	46.358	47.727	0.05257					123	50	4	0	0	0	7.827E-05	2	10547	10529;10547		144.35	89.577	1	3479500			51298	12748	29230	29231	62975;62976	62976					0.027331453345595946
VAQKNYFNI	9	Unmodified	_VAQKNYFNI_					0	0	0		nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	nc|ENSG00000147364|Q8TCJ0-3|FBXO25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7936401367188	2	548.792924	1095.57129	0.70987	0.00038957	-0.36984	-0.00020297	0.34003	0.0001866	548.7928607732556	46.785	1.2624	46.84	46.44	47.702	0.054371					123	45	4	0	0	0	7.827E-05	2	10580	10531;10580		144.35	82.993	1	3083400			51299	12748	29230	29231	62977;62978	62978					0.027331453345595946
VAQLVFCLFVF	11	Unmodified	_VAQLVFCLFVF_					0	0	0		ENST00000480146.1_1_4:186535903-186536357:-|nuORF	ENST00000480146.1_1_4:186535903-186536357:-|nuORF	ENST00000480146.1_1_4:186535903-186536357:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.755615234375	3	429.238627	1284.69405	-0.20988	-9.0087E-05	4.9924E-05	2.1429E-08	-0.20983	-9.0066E-05	429.23863334298784	39.929	0.5312	39.929	39.695	40.226	0					30	18	2	0	0	0	0.33094	1	8517	8517		4.7159	0	1	181570			51300	11001	29231	29232	62979	62979					0.06309265741583658
VAQPLGRSL	9	Unmodified	_VAQPLGRSL_					0	0	0		ENSG00000182810|ENST00000332395|DDX28	ENSG00000182810|ENST00000332395|DDX28	ENSG00000182810|ENST00000332395|DDX28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.7821960449219	2	470.782359	939.550165	0.17345	8.1657E-05	0.25687	0.00012093	0.43032	0.00020259	470.7822708084417	36.306	0.41035	36.306	36.037	36.447	0					21	14	2	0	0	0	0.24311	1	7388	7388		7.2892	0	1	310620			51301	7321	29232	29233	62980	62980					0.07797180025715988
VAQPLGRSL	9	Unmodified	_VAQPLGRSL_					0	0	0		ENSG00000182810|ENST00000332395|DDX28	ENSG00000182810|ENST00000332395|DDX28	ENSG00000182810|ENST00000332395|DDX28	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	470.782359	939.550165	0.30484	0.00014351	-0.3723	-0.00017527	-0.067459	-3.1759E-05	470.78221481961486	36.155	0.45053	36.238	36.008	36.458	0.082359	-0.034116	-7.0071E-05	NaN	7.2892	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333630			51302	7321	29232	29233							0.07797180025715988
VAQPQGIQL	9	Unmodified	_VAQPQGIQL_					0	0	0		nc|ENSG00000102804|Q15714-3|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	nc|ENSG00000102804|Q15714-3|TSC22D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.8028564453125	2	477.274367	952.53418	0.44263	0.00021126	0.097881	4.6716E-05	0.54051	0.00025797	477.27443464603886	45.591	0.46632	45.591	45.366	45.832	0					26	16	2	0	0	0	0.19839	1	10172	10172		21.747	0	1	245280			51303	1785	29233	29234	62981	62981					0.05601473788817657
VAQRDPIIAK	10	Unmodified	_VAQRDPIIAK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2759399414062	2	555.835123	1109.65569	0.22267	0.00012377	-0.67413	-0.00037471	-0.45146	-0.00025094	555.8348106347785	22.141	0.42391	22.141	21.966	22.39	0					18	14	2	0	0	0	0.36368	2	3038	3038;3071		10.151	4.4187	1	63014			51304	8602	29234	29235	62982;62983	62982					0.10525096151332036
VAQRDPIIAK	10	Unmodified	_VAQRDPIIAK_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8355102539062	2	555.835123	1109.65569	0.073311	4.0749E-05	0.59638	0.00033149	0.66969	0.00037224	555.8352843304061	22.159	0.39524	22.11	21.948	22.343	-0.049377					18	13	2	0	0	0	0.38284	1	3063	3063		6.6304	2.4409	1	48300			51305	8602	29234	29235	62984	62984					0.10525096151332036
VAQTPVLAAK	10	Unmodified	_VAQTPVLAAK_					0	0	0			REV__nc|ENSG00000163520|P98095|FBLN2	REV__nc|ENSG00000163520|P98095|FBLN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.305908203125	2	499.305667	996.596781	-0.0039826	-1.9885E-06	0.23733	0.0001185	0.23335	0.00011651	499.30572254485025	39.039	0.61205	39.039	38.79	39.402	0					40	21	2	0	0	0	0.31867	1	8176	8176		18.146	0	1	1210100	+		51306	17063	29235	29236	62985	62985					0.09834619856985682
VAQTPVLAAK	10	Unmodified	_VAQTPVLAAK_					0	0	0			REV__nc|ENSG00000163520|P98095|FBLN2	REV__nc|ENSG00000163520|P98095|FBLN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3058776855469	2	499.305667	996.596781	0.24141	0.00012054	-0.0082475	-4.118E-06	0.23316	0.00011642	499.3056068760681	38.966	0.6872	39.059	38.81	39.497	0.09267					44	24	2	0	0	0	0.34795	1	8209	8209		13.042	0	1	902470	+		51307	17063	29235	29236	62986	62986					0.09834619856985682
VAQTPVLAAK	10	Unmodified	_VAQTPVLAAK_					0	0	0			REV__nc|ENSG00000163520|P98095|FBLN2	REV__nc|ENSG00000163520|P98095|FBLN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.3055725097656	2	499.305667	996.596781	0.51294	0.00025612	-0.29508	-0.00014733	0.21787	0.00010878	499.3054095808235	38.921	0.68872	39.02	38.735	39.424	0.099407					43	24	2	0	0	0	0.30872	1	8128	8128		19.362	0	1	1049500	+		51308	17063	29235	29236	62987	62987					0.09834619856985682
VAQTPVLAAK	10	Unmodified	_VAQTPVLAAK_					0	0	0			REV__nc|ENSG00000163520|P98095|FBLN2	REV__nc|ENSG00000163520|P98095|FBLN2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	499.305667	996.596781	0.51294	0.00025612	-0.29508	-0.00014733	0.21787	0.00010878	499.3054095808235	38.921	0.68872	39.02	38.735	39.424	0.099407	-0.019283	-0.00026142	NaN	19.362	43	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1049500	+		51309	17063	29235	29236							0.09834619856985682
VARAEKDLLE	10	Unmodified	_VARAEKDLLE_					0	0	0		nc|ENSG00000128487|Q5M775-2|SPECC1;SPECC1|p.S912Cfs*5|1|0.13|ENSG00000128487|chr17:20257503-20257504|-/TGCAAACATATAT|frameshift_variant;ENSG00000128487|ENST00000395527|SPECC1;nc|ENSG00000128487|Q5M775-5|SPECC1;nc|ENSG00000128487|Q5M775-3|SPECC1;nc|ENSG00000128487|Q5M775-4|SPECC1	nc|ENSG00000128487|Q5M775-2|SPECC1	nc|ENSG00000128487|Q5M775-2|SPECC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3082885742188	2	572.322045	1142.62954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.481	1	76.481	75.981	76.981	0								0	0	0	0.3367	1	19697	19697		20.415	1.1575	1				51310	3369	29236	29237	62988	62988					0.06392782189186619
VAREAALGA	9	Unmodified	_VAREAALGA_					0	0	0		nc|ENSG00000138029|P55084-2|HADHB;ENSG00000138029|ENST00000317799|HADHB	nc|ENSG00000138029|P55084-2|HADHB	nc|ENSG00000138029|P55084-2|HADHB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.9259033203125	2	429.245609	856.476666	-0.10567	-4.5358E-05	-0.25504	-0.00010947	-0.36071	-0.00015483	429.24519401463425	24.847	0.5028	24.847	24.736	25.239	0					29	17	2	0	0	0	0.25291	1	3853	3853		5.2307	0	1	160720			51311	4105	29237	29238	62989	62989					0.04268631583215665
VARKLSRPL	9	Unmodified	_VARKLSRPL_					0	0	0		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3400268554688	2	520.340375	1038.6662	0.20697	0.00010769	-0.48397	-0.00025183	-0.277	-0.00014414	520.3400633464825	19.169	0.72556	19.113	18.819	19.544	-0.055691					58	24	3	0	0	0	0.24471	1	2167	2167		17.113	3.2068	1	368900			51312	6107	29238	29239	62990	62990					0.14841123596397665
VARKLSRPL	9	Unmodified	_VARKLSRPL_					0	0	0		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	520.340375	1038.6662	0.211	0.00010979	-0.61412	-0.00031955	-0.40312	-0.00020976	520.3400018260694	19.049	0.80902	19.049	18.738	19.547	0	-0.026083	-6.7715E-05	NaN	17.113	71	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358950			51313	6107	29238	29239							0.14841123596397665
VARKLSRPL	9	Unmodified	_VARKLSRPL_					0	0	0		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	520.340375	1038.6662	0.22333	0.00011621	-0.57028	-0.00029674	-0.34696	-0.00018054	520.3400249785408	19.179	0.79338	19.064	18.785	19.579	-0.11592	-0.011641	-2.2096E-05	NaN	17.113	66	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345100			51314	6107	29238	29239							0.14841123596397665
VARLKRPREL	10	Unmodified	_VARLKRPREL_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2657470703125	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.142	1	30.17	29.67	30.67	0.027157								0	0	0	0.38023	1	5476	5476		2.086	0	1		+		51315	18016	29239	29240	62991	62991					0.1689555795353499
VARPLSTAL	9	Unmodified	_VARPLSTAL_					0	0	0		ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.8008117675781	2	464.284734	926.554916	-0.082177	-3.8153E-05	0.055768	2.5892E-05	-0.026408	-1.2261E-05	464.2848704092612	38.229	0.56411	38.229	38.007	38.571	0					39	19	3	0	0	0	0.21538	1	7956	7956		20.415	4.5674	1	329350			51316	314	29240	29241	62992	62992					0.08870064168456793
VARQCHEC	8	Unmodified	_VARQCHEC_					0	0	0			REV__ENSG00000178233|ENST00000451188|TMEM151B	REV__ENSG00000178233|ENST00000451188|TMEM151B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.2708435058594	2	473.205104	944.395655	-0.23765	-0.00011246	0.10528	4.9818E-05	-0.13237	-6.2639E-05	473.20520552163657	12.786	0.30346	12.786	12.699	13.003	0					14	10	2	0	0	0	0.34437	1	288	288		0.69038	0	1	33184	+		51317	18025	29241	29242	62993	62993					-0.07876715722818517
VARQCHEC	8	Unmodified	_VARQCHEC_					0	0	0			REV__ENSG00000178233|ENST00000451188|TMEM151B	REV__ENSG00000178233|ENST00000451188|TMEM151B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	473.205104	944.395655	-0.10587	-5.0097E-05	0.38025	0.00017994	0.27438	0.00012984	473.20521576729953	12.804	0.31323	12.705	12.611	12.924	-0.099291	-0.051781	8.4689E-05	NaN	0.69038	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52819	+		51318	18025	29241	29242							-0.07876715722818517
VARQCHEC	8	Unmodified	_VARQCHEC_					0	0	0			REV__ENSG00000178233|ENST00000451188|TMEM151B	REV__ENSG00000178233|ENST00000451188|TMEM151B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	473.205104	944.395655	-0.19336	-9.1499E-05	0.40214	0.00019029	0.20877	9.8793E-05	473.2052163089834	12.847	0.32265	12.779	12.671	12.993	-0.067496	0.02245	0.0001054	NaN	0.69038	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48431	+		51319	18025	29241	29242							-0.07876715722818517
VARRVLQAL	9	Unmodified	_VARRVLQAL_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.3326416015625	2	513.33255	1024.65055	0.16409	8.4232E-05	0.59027	0.00030301	0.75436	0.00038724	513.3329377910707	33.186	0.41961	33.186	32.865	33.285	0					42	14	4	0	0	0	0.0022761	2	6373	6373;6437		108	46.64	1	1927300			51320	1972	29242	29243	62994;62995	62994					0.13920837079353987
VARRVLQAL	9	Unmodified	_VARRVLQAL_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.332763671875	2	513.33255	1024.65055	0.14844	7.6198E-05	0.58224	0.00029888	0.73068	0.00037508	513.3328863046503	33.079	0.44079	33.134	32.814	33.255	0.055309					34	15	3	0	0	0	0.0082143	1	6343	6343		78.149	23.376	1	1929300			51321	1972	29242	29243	62996	62996					0.13920837079353987
VARRVLQAL	9	Unmodified	_VARRVLQAL_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.3328857421875	2	513.33255	1024.65055	0.11614	5.9617E-05	-2.9362	-0.0015072	-2.82	-0.0014476	513.3297116349719	33.107	1.1045	33.162	32.85	33.954	0.054375					64	39	4	0	0	0	0.0046874	1	6347	6347		88.904	34.13	1	1775500			51322	1972	29242	29243	62997	62997					0.13920837079353987
VARRWRRRQGG	11	Unmodified	_VARRWRRRQGG_					0	0	0			REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.608154296875	3	466.608098	1396.80247	0.056339	2.6288E-05	0.035601	1.6612E-05	0.09194	4.29E-05	466.6080710282967	90.432	2.7151	90.432	88.651	91.366	0					604	185	4	0	0	0	0.48212	1	23612	23612		0.45452	0.45452	1	3457100	+		51323	20310	29243	29244	62998	62998					0.11993630879624106
VARRWRRRQGG	11	Unmodified	_VARRWRRRQGG_					0	0	0			REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	REV__ENST00000367330.5_1_1:201123337-201123409:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.6078796386719	3	466.608098	1396.80247	0.28642	0.00013365	-0.21966	-0.0001025	0.066764	3.1153E-05	466.60789985121824	94.764	0.8222	94.762	94.439	95.261	-0.0020142					183	72	3	0	0	0	0.48247	1	25280	25280		0.40827	0.40827	1	328430	+		51324	20310	29243	29244	62999	62999					0.11993630879624106
VARSAKGR	8	Unmodified	_VARSAKGR_					0	0	0		nc|nan|Q8IYJ2|C10orf67;ENSG00000179133|ENST00000636213|C10orf67	nc|nan|Q8IYJ2|C10orf67	nc|nan|Q8IYJ2|C10orf67	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.2280578613281	2	422.759218	843.503883	0.57052	0.00024119	1.7783	0.00075178	2.3488	0.00099298	422.76019371081173	50.235	0.18517	50.256	50.202	50.387	0.020691					9	6	2	0	0	0	0.34218	1	11641	11641		2.3027	0	1	82965			51325	7105	29244	29245	63000	63000					0.07587159914282893
VARSGPGAGL	10	Unmodified	_VARSGPGAGL_					0	0	0			REV__ENST00000472045.1_1_5:131819943-131820240:-|nuORF	REV__ENST00000472045.1_1_5:131819943-131820240:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7692565917969	2	442.751059	883.487565	0.16202	7.1736E-05	-0.0011728	-5.1926E-07	0.16085	7.1217E-05	442.75105712347	17.567	0.32205	17.567	17.368	17.69	0					15	10	2	0	0	0	0.31794	1	1660	1660		8.1555	0.8663	1	21187	+		51326	21364	29245	29246	63001	63001					0.0411603395750717
VARTTLKVT	9	Unmodified	_VARTTLKVT_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.25433349609375	2	494.811116	987.60768	0.5295	0.000262	-0.62584	-0.00030967	-0.096338	-4.7669E-05	494.8107551701754	33.299	0.41387	33.354	33.199	33.613	0.055309					21	14	2	0	0	0	0.23235	1	6464	6464		11.495	0	1	98848			51327	5186	29246	29247	63002	63002					0.11338022231268496
VARVLRQLA	9	Unmodified	_VARVLRQLA_					0	0	0			REV__ENST00000382952.7_2_4:1205816-1205999:-|nuORF	REV__ENST00000382952.7_2_4:1205816-1205999:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.3330078125	2	513.33255	1024.65055	0.16409	8.4232E-05	0.59027	0.00030301	0.75436	0.00038724	513.3329377910707	33.186	0.41961	33.186	32.865	33.285	0					42	14	4	0	0	0	0.12846	1	6422	6422		34.102	0	1	1927300	+		51328	20575	29247	29248	63003	63003					0.13920837079353987
VARVLRQLA	9	Unmodified	_VARVLRQLA_					0	0	0			REV__ENST00000382952.7_2_4:1205816-1205999:-|nuORF	REV__ENST00000382952.7_2_4:1205816-1205999:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8253173828125	2	513.33255	1024.65055	0.14844	7.6198E-05	0.58224	0.00029888	0.73068	0.00037508	513.3328863046503	33.079	0.44079	33.134	32.814	33.255	0.055309					34	15	3	0	0	0	0.12846	1	6404	6404		34.102	0	1	1929300	+		51329	20575	29247	29248	63004	63004					0.13920837079353987
VARVLRQLA	9	Unmodified	_VARVLRQLA_					0	0	0			REV__ENST00000382952.7_2_4:1205816-1205999:-|nuORF	REV__ENST00000382952.7_2_4:1205816-1205999:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8251953125	2	513.33255	1024.65055	0.11614	5.9617E-05	-2.9362	-0.0015072	-2.82	-0.0014476	513.3297116349719	33.107	1.1045	33.162	32.85	33.954	0.054375					64	39	4	0	0	0	0.12846	1	6401	6401		34.102	0	1	1775500	+		51330	20575	29247	29248	63005	63005					0.13920837079353987
VARYVGVDSDF	11	Unmodified	_VARYVGVDSDF_					0	0	0			REV__ENST00000487676.1_1_6:32632488-32634384:-|nuORF	REV__ENST00000487676.1_1_6:32632488-32634384:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.55230712890625	3	409.87166	1226.59315	0.20922	8.5752E-05	-2.3297	-0.00095489	-2.1205	-0.00086914	410.20478937639126	44.474	0.50194	44.549	44.333	44.835	0.075047					32	17	3	0	0	0	0.40701	1	9865	9865		10.315	0.16466	1	192280	+		51331	18069	29248	29249	63006	63006					-0.011080947075242875
VARYVRDVRF	10	Unmodified	_VARYVRDVRF_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.2481689453125	3	427.578923	1279.71494	0.12553	5.3673E-05	-1.1878	-0.00050786	-1.0622	-0.00045419	427.5782971551886	26.719	0.55891	26.701	26.476	27.035	-0.018019					36	19	3	0	0	0	0.31942	1	4490	4490		6.1918	2.3155	1	187030	+		51332	18755	29249	29250	63007	63007					0.08626992165477532
VASEVMRYNY	10	Unmodified	_VASEVMRYNY_					0	0	0			REV__ENSG00000151461|ENST00000357604|UPF2	REV__ENSG00000151461|ENST00000357604|UPF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.884033203125	3	411.197379	1230.57031	-0.11152	-4.5855E-05	-2.4594	-0.0010113	-2.5709	-0.0010572	411.5302945198709	20.043	0.4725	20.043	19.6	20.073	0					24	16	2	0	0	0	0.32051	1	2364	2364		3.8763	2.1341	1	78490	+		51333	16541	29250	29251	63008	63008					-0.03575437096628775
VASEYDKQ	8	Unmodified	_VASEYDKQ_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7872009277344	2	470.224539	938.434526	0.23109	0.00010867	-0.00047148	-2.217E-07	0.23062	0.00010844	470.22456584899027	54.065	0.47697	54.128	53.876	54.353	0.063202					23	17	2	0	0	0	0.34046	1	12772	12772		9.3474	0	1	252980			51334	342	29251	29252	63009	63009					-0.03715388615808024
VASGVNYLSL	10	Unmodified	_VASGVNYLSL_					0	0	0		HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|335|2|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|335|2|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|335|2|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.76953125	2	511.779482	1021.54441	0.054796	2.8043E-05	1.2757	0.00065289	1.3305	0.00068093	511.78137882980536	16.216	0.74514	16.102	15.866	16.611	-0.11434					96	25	5	0	0	0	0.37133	1	1330	1330		8.7454	0.83525	1	647380			51335	12417	29252	29253	63010	63010					0.034500367233818
VASHRQTRMEQ	11	Unmodified	_VASHRQTRMEQ_					0	0	0			REV__PTPN12|p.F450Lfs*7|1|0.28|ENSG00000127947|chr7:77627026-77627026|T/-|frameshift_variant	REV__PTPN12|p.F450Lfs*7|1|0.28|ENSG00000127947|chr7:77627026-77627026|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.2350769042969	3	448.226332	1341.65717	-0.012846	-5.7577E-06	-0.62387	-0.00027963	-0.63671	-0.00028539	448.56108691325903	18.683	0.31875	18.566	18.387	18.706	-0.11739					13	10	2	0	0	0	0.46554	1	2043	2043		2.6312	1.039	1	29655	+		51336	15356	29253	29254	63011	63011					3.6217777505953563E-06
VASKHSKAT	9	Unmodified	_VASKHSKAT_					0	0	0			REV__ENST00000511535.1_1_4:5823489-5889136:-|nuORF	REV__ENST00000511535.1_1_4:5823489-5889136:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2561340332031	2	464.764166	927.513779	0.28419	0.00013208	-0.57128	-0.00026551	-0.28709	-0.00013343	464.7637886237111	26.521	0.71896	26.499	26.043	26.762	-0.022236					44	24	2	0	0	0	0.16283	1	4327	4327		29.082	0	1	150320	+		51337	13766	29254	29255	63012	63012					0.047123031289856954
VASLGLVLHL	10	Unmodified	_VASLGLVLHL_					0	0	0			REV__ENSG00000117400|ENST00000372470|MPL	REV__ENSG00000117400|ENST00000372470|MPL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.7392578125	2	511.32386	1020.63317	0.15834	8.0962E-05	0.13376	6.8396E-05	0.2921	0.00014936	511.3237607365308	69.818	0.4158	69.884	69.717	70.133	0.06604					17	14	2	0	0	0	0.30586	1	17624	17624		13.906	0	1	81773	+		51338	14966	29255	29256	63013	63013					0.12367496753699925
VASLPRRD	8	Unmodified	_VASLPRRD_					0	0	0		SALL1|p.G1140Wfs*35|1|0.22|ENSG00000103449|chr16:51138804-51138805|-/A|frameshift_variant;ENSG00000103449|ENST00000251020|SALL1;SALL1|p.Q507Hfs*10|1|0.08|ENSG00000103449|chr16:51140701-51140702|-/AAGA|frameshift_variant;ENST00000562674.1_1_16:51177212-51185152:-|nuORF	SALL1|p.G1140Wfs*35|1|0.22|ENSG00000103449|chr16:51138804-51138805|-/A|frameshift_variant	SALL1|p.G1140Wfs*35|1|0.22|ENSG00000103449|chr16:51138804-51138805|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.264404296875	2	457.264333	912.514114	0.25545	0.00011681	-0.030079	-1.3754E-05	0.22537	0.00010306	457.264237516888	71.611	2.0764	71.584	70.663	72.74	-0.027275					256	74	5	0	0	0	0.4419	1	18183	18183		8.5933	0	1	2893400			51339	1835	29256	29257	63014	63014					0.054357228488470355
VASLRPRP	8	Unmodified	_VASLRPRP_					0	0	0		ENST00000599167.5_1_19:50000650-50000725:+|nuORF	ENST00000599167.5_1_19:50000650-50000725:+|nuORF	ENST00000599167.5_1_19:50000650-50000725:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.59930419921875	2	448.277244	894.539935	0.19777	8.8655E-05	-0.19071	-8.549E-05	0.0070615	3.1655E-06	448.27706718300226	20.119	0.60291	20.119	19.768	20.371	0					31	22	2	0	0	0	0.34319	1	2512	2512		5.7604	0	1	133130			51340	12238	29257	29258	63015	63015					0.08844617091131113
VASLRPRP	8	Unmodified	_VASLRPRP_					0	0	0		ENST00000599167.5_1_19:50000650-50000725:+|nuORF	ENST00000599167.5_1_19:50000650-50000725:+|nuORF	ENST00000599167.5_1_19:50000650-50000725:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.26483154296875	2	448.277244	894.539935	0.50216	0.0002251	-0.5059	-0.00022679	-0.0037489	-1.6805E-06	448.27693673214486	20.149	0.67987	20.093	19.816	20.496	-0.055693					38	24	3	0	0	0	0.45015	1	2547	2547		5.7604	0	1	104480			51341	12238	29257	29258	63016	63016					0.08844617091131113
VASNSGECL	9	Unmodified	_VASNSGECL_					0	0	0			REV__nc|ENSG00000103342|P15170-2|GSPT1	REV__nc|ENSG00000103342|P15170-2|GSPT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.242431640625	2	440.197467	878.380382	0.19764	8.7002E-05	-0.65065	-0.00028641	-0.453	-0.00019941	440.1970098713665	23.807	0.79798	23.768	23.283	24.081	-0.038927					46	27	2	0	0	0	0.25526	1	3414	3414		7.9102	1.5561	1	114410	+		51342	14367	29258	29259	63017	63017					-0.06367304039019928
VASPPPKI	8	Unmodified	_VASPPPKI_					0	0	0			REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.23846435546875	2	404.749996	807.485439	-0.11755	-4.758E-05	-0.11926	-4.8271E-05	-0.23681	-9.585E-05	404.7499358399346	21.62	0.46004	21.571	21.344	21.804	-0.049377					22	15	2	0	0	0	0.45015	1	2878	2878		5.7604	0	1	62443	+		51343	13891	29259	29260	63018	63018					0.07399605219711702
VASRSLRTL	9	Unmodified	_VASRSLRTL_					0	0	0		ENST00000398637.9_1_12:46582428-46582674:-|nuORF	ENST00000398637.9_1_12:46582428-46582674:-|nuORF	ENST00000398637.9_1_12:46582428-46582674:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.8153076171875	2	501.806365	1001.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.359	1	91.36	90.86	91.86	0.00046539								0	0	0	0.23367	1	24247	24247		11.64	0.52583	1				51344	10168	29260	29261	63019	63019					0.09744253945768833
VATAAICILL	10	Unmodified	_VATAAICILL_					0	0	0		ENSG00000189280|ENST00000338513|GJB5	ENSG00000189280|ENST00000338513|GJB5	ENSG00000189280|ENST00000338513|GJB5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7724914550781	2	494.298996	986.583439	0.094247	4.6586E-05	3.9301	0.0019427	4.0244	0.0019892	494.3012558526356	14.453	0.27706	14.348	14.212	14.489	-0.10466					15	8	2	0	0	0	0.32033	1	749	749		3.5965	1.7523	1	47923			51345	7810	29261	29262	63020	63020					0.08961045753392227
VATAKDTYNKK	11	Unmodified	_VATAKDTYNKK_					0	0	0		nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.266357421875	3	413.562827	1237.66665	0.06957	2.8772E-05	1.4678	0.00060704	1.5374	0.00063581	413.89781379919293	16.566	0.47623	16.452	16.219	16.695	-0.11434					28	16	2	0	0	0	0.33149	1	1401	1401		2.4348	0.52841	1	67743			51346	8082	29262	29263	63021	63021					0.05732453734913179
VATAKDTYNKK	11	Unmodified	_VATAKDTYNKK_					0	0	0		nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	413.562827	1237.66665	-0.16004	-6.6185E-05	-0.30811	-0.00012742	-0.46815	-0.00019361	413.56346798819834	16.364	0.62706	16.364	16.093	16.72	0	-0.042009	-0.0014349	NaN	2.4348	38	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53952			51347	8082	29262	29263							0.05732453734913179
VATAKDTYNKK	11	Unmodified	_VATAKDTYNKK_					0	0	0		nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	413.562827	1237.66665	0.16794	6.9454E-05	0.37975	0.00015705	0.5477	0.00022651	413.89819006721876	16.465	0.38068	16.402	16.177	16.558	-0.062534	-0.0036339	-0.00058146	NaN	2.4348	36	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50263			51348	8082	29262	29263							0.05732453734913179
VATDAPLRK	9	Unmodified	_VATDAPLRK_					0	0	0		nc|ENSG00000081913|O60346-2|PHLPP1;ENSG00000081913|ENST00000262719|PHLPP1	nc|ENSG00000081913|O60346-2|PHLPP1	nc|ENSG00000081913|O60346-2|PHLPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.77734375	2	485.787641	969.56073	0.28079	0.0001364	-0.20164	-9.7956E-05	0.079146	3.8448E-05	485.7874874896921	19.846	0.74842	19.73	19.433	20.182	-0.11592					47	25	3	0	0	0	0.30623	1	2335	2335		7.9102	0	1	76080			51349	1190	29263	29264	63022	63022					0.07473162680128098
VATDQEQVIFQ	11	Unmodified	_VATDQEQVIFQ_					0	0	0			REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171	REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.53167724609375	3	426.550587	1276.62993	-0.21106	-9.0026E-05	-0.97653	-0.00041654	-1.1876	-0.00050656	426.55029381537264	23.75	0.099863	23.75	23.669	23.769	0					4	2	2	0	0	0	0.33277	1	3535	3535		3.0723	0.44103	1	20040	+		51350	17199	29264	29265	63023	63023					0.0026815711837571143
VATHVPLI	8	Unmodified	_VATHVPLI_					0	0	0		ENSG00000010404|ENST00000340855|IDS	ENSG00000010404|ENST00000340855|IDS	ENSG00000010404|ENST00000340855|IDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.2633056640625	2	425.263271	848.511988	-0.093615	-3.9811E-05	-0.20825	-8.8563E-05	-0.30187	-0.00012837	425.26331416910784	59.003	1.7593	59.003	58.654	60.413	0					186	62	6	0	0	0	0.10409	4	14361	14267;14361;14400;14450		59.795	0	1	9301000			51351	424	29265	29266	63024;63025;63026;63027	63025					0.08167294111046886
VATHVPLI	8	Unmodified	_VATHVPLI_					0	0	0		ENSG00000010404|ENST00000340855|IDS	ENSG00000010404|ENST00000340855|IDS	ENSG00000010404|ENST00000340855|IDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.2633056640625	2	425.263271	848.511988	-0.07413	-3.1525E-05	-0.18169	-7.7268E-05	-0.25582	-0.00010879	425.263318741529	58.837	1.5132	58.928	58.56	60.073	0.091301					175	53	6	0	0	0	0.20019	1	14411	14411		42.968	0	1	9340600			51352	424	29265	29266	63028	63028					0.08167294111046886
VATHVPLI	8	Unmodified	_VATHVPLI_					0	0	0		ENSG00000010404|ENST00000340855|IDS	ENSG00000010404|ENST00000340855|IDS	ENSG00000010404|ENST00000340855|IDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.2633056640625	2	425.263271	848.511988	0.049806	2.1181E-05	-0.32032	-0.00013622	-0.27051	-0.00011504	425.26326659554667	58.939	1.6376	58.925	58.583	60.22	-0.014267					160	57	5	0	0	0	0.14465	3	14344	14344;14387;14439		52.693	0	1	9273300			51353	424	29265	29266	63029;63030;63031	63029					0.08167294111046886
VATIKNFKAQI	11	Unmodified	_VATIKNFKAQI_					0	0	0			REV__ENSG00000103540|ENST00000694978|CCP110	REV__ENSG00000103540|ENST00000694978|CCP110	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.8838806152344	3	411.583562	1231.72886	0.32595	0.00013415	0.72246	0.00029735	1.0484	0.00043151	411.58379949619325	20.313	0.3705	20.203	19.906	20.277	-0.11003					25	13	2	0	0	0	0.33287	1	2434	2434		1.3296	0	1	104010	+		51354	14379	29266	29267	63032	63032					0.12226224873938918
VATKPLYV	8	Unmodified	_VATKPLYV_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;PABPC3|p.S464Lfs*77|1|0.19|ENSG00000151846|chr13:25097587-25097587|T/-|frameshift_variant	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.63592529296875	2	445.770929	889.527304	0.37049	0.00016515	-0.071804	-3.2008E-05	0.29869	0.00013315	445.7707744964297	36.121	0.60371	36.121	35.932	36.536	0					30	21	2	0	0	0	0.23494	1	7327	7327		54.774	8.7526	1	369270			51355	938	29267	29268	63033	63033					0.07812160908224541
VATKPLYV	8	Unmodified	_VATKPLYV_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;PABPC3|p.S464Lfs*77|1|0.19|ENSG00000151846|chr13:25097587-25097587|T/-|frameshift_variant	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.6358947753906	2	445.770929	889.527304	0.31563	0.0001407	-0.077756	-3.4661E-05	0.23787	0.00010604	445.7706572552214	36.077	0.61242	36.159	35.874	36.486	0.082359					37	21	3	0	0	0	0.2564	1	7285	7285		39.957	7.6518	1	409470			51356	938	29267	29268	63034	63034					0.07812160908224541
VATKPLYV	8	Unmodified	_VATKPLYV_					0	0	0		nc|ENSG00000070756|P11940-2|PABPC1;ENSG00000070756|ENST00000318607|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;PABPC3|p.S464Lfs*77|1|0.19|ENSG00000151846|chr13:25097587-25097587|T/-|frameshift_variant	nc|ENSG00000070756|P11940-2|PABPC1	nc|ENSG00000070756|P11940-2|PABPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.6358642578125	2	445.770929	889.527304	0.49505	0.00022068	-0.2359	-0.00010516	0.25914	0.00011552	445.7706288927781	36.004	0.60704	36.091	35.844	36.451	0.08625					41	21	3	0	0	0	0.28088	1	7286	7286		32.305	6.9062	1	413180			51357	938	29267	29268	63035	63035					0.07812160908224541
VATQRKPK	8	Unmodified	_VATQRKPK_					0	0	0			REV__nc|ENSG00000155966|P51816-2|AFF2	REV__nc|ENSG00000155966|P51816-2|AFF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7767028808594	2	464.290351	926.566149	-0.052516	-2.4383E-05	0.16714	7.7602E-05	0.11463	5.3219E-05	464.2903477418898	24.933	0.27667	24.933	24.843	25.12	0					11	9	2	0	0	0	0.33916	1	3904	3904		26.341	0.94196	1	33005	+		51358	16722	29268	29269	63036	63036					0.0999288626261432
VATRKPGI	8	Unmodified	_VATRKPGI_					0	0	0			REV__nc|ENSG00000087111|Q96S52-2|PIGS	REV__nc|ENSG00000087111|Q96S52-2|PIGS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2664489746094	2	421.266345	840.518136	-0.18011	-7.5874E-05	0.79576	0.00033523	0.61565	0.00025935	421.26651216962694	16.495	1.3079	16.381	16.11	17.417	-0.11434					105	46	5	0	0	0	0.28969	1	1358	1358		36.044	1.8569	1	961260	+		51359	13987	29269	29270	63037	63037					0.09149812342559471
VATRLKKLHVK	11	Unmodified	_VATRLKKLHVK_					0	0	0		ENST00000366919.6_1_6:161538088-161538208:+|nuORF	ENST00000366919.6_1_6:161538088-161538208:+|nuORF	ENST00000366919.6_1_6:161538088-161538208:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.9606018066406	3	431.622351	1291.84522	0.39054	0.00016857	-1.135	-0.00048989	-0.74446	-0.00032132	431.95619452815595	36.401	0.28293	36.487	36.424	36.707	0.08625					14	9	2	0	0	0	0.33236	1	7439	7439		4.4062	0.81909	1	114230			51360	9717	29270	29271	63038	63038					0.2109758816447993
VATSVKLDK	9	Unmodified	_VATSVKLDK_					0	0	0			REV__nc|ENSG00000173692|Q99460-2|PSMD1	REV__nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2646484375	2	480.78985	959.565146	0.094539	4.5454E-05	0.198	9.5196E-05	0.29254	0.00014065	480.78987431455664	42.536	0.45699	42.621	42.434	42.891	0.085201					27	16	2	0	0	0	0.22061	1	9307	9307		24.021	1.2843	1	354580	+		51361	23089	29271	29272	63039	63039					0.08374627103057719
VATSVKLDK	9	Unmodified	_VATSVKLDK_					0	0	0			REV__nc|ENSG00000173692|Q99460-2|PSMD1	REV__nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2650146484375	2	480.78985	959.565146	0.20055	9.6423E-05	-0.21783	-0.00010473	-0.017279	-8.3075E-06	480.78964481680487	42.44	0.44582	42.531	42.354	42.8	0.091362					26	15	2	0	0	0	0.1939	1	9270	9270		24.021	5.8742	1	380410	+		51362	23089	29271	29272	63040	63040					0.08374627103057719
VATSVKLDK	9	Unmodified	_VATSVKLDK_					0	0	0			REV__nc|ENSG00000173692|Q99460-2|PSMD1	REV__nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	480.78985	959.565146	0.030016	1.4431E-05	-0.08329	-4.0045E-05	-0.053274	-2.5614E-05	480.78971566340545	42.664	0.54428	42.664	42.49	43.034	0	0.058744	-5.1785E-05	NaN	24.021	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380720	+		51363	23089	29271	29272							0.08374627103057719
VATTKENVS	9	Unmodified	_VATTKENVS_					0	0	0		nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	nc|ENSG00000196632|Q9BYP7-3|WNK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.7721252441406	2	474.753464	947.492375	0.089128	4.2314E-05	0.34401	0.00016332	0.43313	0.00020563	474.7536376971983	15.998	0.62094	15.936	15.73	16.351	-0.062534					45	21	3	0	0	0	0.2322	1	1186	1186		20.454	0	1	150160			51364	7889	29272	29273	63041	63041					0.01652873309626557
VATWMLPDSA	10	Unmodified	_VATWMLPDSA_					0	0	0			REV__ENSG00000186452|ENST00000398458|TMPRSS12	REV__ENSG00000186452|ENST00000398458|TMPRSS12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.7659301757812	2	545.765517	1089.51648	0.51936	0.00028345	0.3247	0.00017721	0.84406	0.00046066	545.7657277091124	17.604	0.37816	17.543	17.358	17.736	-0.060429					18	12	2	0	0	0	0.40106	1	1693	1693		3.2813	1.2216	1	48296	+		51365	18448	29273	29274	63042	63042					-0.02469609528361616
VATYKISYETI	11	Unmodified	_VATYKISYETI_					0	0	0			REV__nc|ENSG00000153707|P23468-2|PTPRD	REV__nc|ENSG00000153707|P23468-2|PTPRD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.7556457519531	3	429.899216	1286.67582	0.091607	3.9382E-05	0.81648	0.00035101	0.90809	0.00039039	429.89944289702765	40.311	0.61159	40.311	40.05	40.662	0					50	21	3	0	0	0	0.32951	1	8673	8673		7.0371	0	1	651650	+		51366	16632	29274	29275	63043	63043					0.04394802300612355
VAVAGLLTV	9	Unmodified	_VAVAGLLTV_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000491494.1_1_3:184025740-184026364:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2593994140625	2	421.770929	841.527304	0.034567	1.4579E-05	0.93933	0.00039618	0.9739	0.00041076	421.7707518328205	72.202	0.97853	72.202	71.718	72.696	0					55	35	2	0	0	0	0.19839	1	18431	18431		28.487	11.545	1	302770			51367	6843	29275	29276	63044	63044					0.10020160908220532
VAVAGLLTV	9	Unmodified	_VAVAGLLTV_					0	0	0		nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2;ENST00000491494.1_1_3:184025740-184026364:+|nuORF	nc|ENSG00000175166|Q13200-2|PSMD2	nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2593078613281	2	421.770929	841.527304	0.15629	6.5919E-05	0.86211	0.00036361	1.0184	0.00042953	421.77060528629767	72.172	1.2481	72.228	71.568	72.816	0.056572					66	45	2	0	0	0	0.14099	1	18359	18359		42.095	13.608	1	247230			51368	6843	29275	29276	63045	63045					0.10020160908220532
VAVAMSVAGLK	11	Unmodified	_VAVAMSVAGLK_					0	0	0		ENST00000492099.1_1_15:84116018-84234026:+|nuORF	ENST00000492099.1_1_15:84116018-84234026:+|nuORF	ENST00000492099.1_1_15:84116018-84234026:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2855834960938	2	523.307352	1044.60015	0.1447	7.5725E-05	-2.2398	-0.0011721	-2.0951	-0.0010964	523.3060323079173	30.298	0.39636	30.325	30.109	30.505	0.027157					27	13	3	0	0	0	0.31791	1	5546	5546		20.415	1.0526	1	191750			51369	11190	29276	29277	63046	63046					0.07963546639325614
VAVCHSMNPP	10	Unmodified	_VAVCHSMNPP_					0	0	0		ENST00000510554.1_2_17:48556455-48556545:+|nuORF	ENST00000510554.1_2_17:48556455-48556545:+|nuORF	ENST00000510554.1_2_17:48556455-48556545:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7462158203125	2	527.744062	1053.47357	0.28549	0.00015067	2.3089	0.0012185	2.5944	0.0013692	527.7457221861118	23.314	0.68887	23.314	22.791	23.48	0					50	23	3	0	0	0	0.36786	1	3411	3411		9.3831	0.035688	1	108160			51370	11373	29277	29278	63047	63047					-0.05102702857425356
VAVDEGAHTEG	11	Unmodified	_VAVDEGAHTEG_					0	0	0			REV__ENSG00000163286|ENST00000295453|ALPG	REV__ENSG00000163286|ENST00000295453|ALPG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.7514038085938	2	542.74891	1083.48327	0.36478	0.00019798	2.3904	0.0012974	2.7552	0.0014954	542.7502461871217	22.463	0.32183	22.418	22.294	22.616	-0.044867					22	10	3	0	0	0	0.34542	1	3168	3168		18.146	2.2992	1	157320	+		51371	17045	29278	29279	63048	63048					-0.055135200467020695
VAVDEGAHTEG	11	Unmodified	_VAVDEGAHTEG_					0	0	0			REV__ENSG00000163286|ENST00000295453|ALPG	REV__ENSG00000163286|ENST00000295453|ALPG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2850341796875	2	542.74891	1083.48327	0.36478	0.00019798	2.3904	0.0012974	2.7552	0.0014954	542.7502461871217	22.463	0.32183	22.418	22.294	22.616	-0.044867					22	10	3	0	0	0	0.32667	1	3175	3175		13.042	2.2185	1	157320	+		51372	17045	29278	29279	63049	63049					-0.055135200467020695
VAVDRAVRSPR	11	Unmodified	_VAVDRAVRSPR_					0	0	0			REV__ENSG00000071553|ENST00000369762|ATP6AP1	REV__ENSG00000071553|ENST00000369762|ATP6AP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.55242919921875	3	409.242311	1224.7051	-0.14394	-5.8908E-05	-0.2774	-0.00011352	-0.42134	-0.00017243	409.24222430299295	22.318	0.70225	22.269	21.972	22.674	-0.049377					55	23	3	0	0	0	0.33094	1	3088	3088		1.2148	0	1	211060	+		51373	13746	29279	29280	63050	63050					0.10173804160126565
VAVDVAVPK	9	Unmodified	_VAVDVAVPK_					0	0	0		ENST00000567696.1_1_16:777422-777680:+|nuORF;ENST00000569143.1_1_16:777422-777998:+|nuORF;ENST00000561750.1_1_16:777422-778482:+|nuORF;nc|ENSG00000103253|Q6PII5-3|HAGHL;nc|ENSG00000103253|Q6PII5-4|HAGHL;ENSG00000103253|ENST00000389703|HAGHL;nc|ENSG00000103253|Q6PII5|HAGHL	ENST00000567696.1_1_16:777422-777680:+|nuORF	ENST00000567696.1_1_16:777422-777680:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.2735595703125	2	449.273835	896.533118	-0.021859	-9.8208E-06	-0.70726	-0.00031775	-0.72912	-0.00032757	449.273439337121	39.816	0.63838	39.816	39.669	40.307	0					42	22	3	0	0	0	0.026579	1	8450	8450		61.602	27.2	1	410630			51374	1823	29280	29281	63051	63051					0.08071259419898524
VAVEERSLT	9	Unmodified	_VAVEERSLT_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;ENST00000505907.1_1_4:6621578-6622043:+|nuORF	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7953796386719	2	502.274564	1002.53457	0.25994	0.00013056	1.1903	0.00059785	1.4502	0.00072841	502.2752312113825	16.358	0.37407	16.296	16.094	16.468	-0.062534					18	12	2	0	0	0	0.25622	1	1335	1335		7.2892	0	1	33388			51375	460	29281	29282	63052	63052					0.033408487179940494
VAVERLLKNQ	10	Unmodified	_VAVERLLKNQ_					0	0	0			REV__ENSG00000136866|ENST00000374227|ZFP37	REV__ENSG00000136866|ENST00000374227|ZFP37	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8094482421875	2	585.35368	1168.69281	-0.052176	-3.0541E-05	-0.12159	-7.1174E-05	-0.17377	-0.00010172	585.3538245294741	28.006	0.34143	28.002	27.851	28.193	-0.0042572					23	11	3	0	0	0	0.32088	1	4874	4874		2.7352	0.67545	1	131890	+		51376	15832	29282	29283	63053	63053					0.11520767697106749
VAVHFRLYFF	10	Unmodified	_VAVHFRLYFF_					0	0	0		ENST00000469535.5_1_1:207934598-207940656:+|nuORF	ENST00000469535.5_1_1:207934598-207940656:+|nuORF	ENST00000469535.5_1_1:207934598-207940656:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.553955078125	3	433.572998	1297.69716	-0.17336	-7.5162E-05	0.84347	0.00036571	0.67011	0.00029054	433.57328185684247	27.206	0.70532	27.185	26.788	27.493	-0.02141					40	24	2	0	0	0	0.31942	1	4637	4637		3.5871	0	1	373280			51377	10857	29283	29284	63054	63054					0.060222769106530905
VAVKEKEKDT	10	Unmodified	_VAVKEKEKDT_					0	0	0			REV__nc|ENSG00000067798|Q8IVL0-3|NAV3	REV__nc|ENSG00000067798|Q8IVL0-3|NAV3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.7607421875	2	573.821878	1145.6292	0.41731	0.00023946	-1.9791	-0.0011356	-1.5617	-0.00089616	573.8207551243204	44.72	0.59805	44.795	44.531	45.129	0.075047					46	21	3	0	0	0	0.31581	1	9949	9949		11.495	11.495	1	434710	+		51378	13694	29284	29285	63055	63055					0.062213624693413294
VAVKRLLRECF	11	Unmodified	_VAVKRLLRECF_					0	0	0		ENSG00000134398|ENST00000256797|ERN2;ENST00000562562.1_1_16:23706236-23712034:-|nuORF	ENSG00000134398|ENST00000256797|ERN2	ENSG00000134398|ENST00000256797|ERN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.6358642578125	3	445.263947	1332.77001	0.17838	7.9426E-05	-0.25904	-0.00011534	-0.080656	-3.5913E-05	445.26395491737503	33.185	0.60607	33.24	32.931	33.537	0.054371					35	21	3	0	0	0	0.3333	1	6482	6482		0.45452	0	1	114890			51379	3782	29285	29286	63056	63056					0.11693662641778246
VAVKRVNRKR	10	Unmodified	_VAVKRVNRKR_					0	0	0		ENSG00000169418|ENST00000368680|NPR1	ENSG00000169418|ENST00000368680|NPR1	ENSG00000169418|ENST00000368680|NPR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.58746337890625	3	409.270312	1224.78911	-0.31203	-0.0001277	2.7438	0.001123	2.4318	0.00099527	409.27237521855875	34.364	0.11152	34.436	34.356	34.468	0.071186					5	3	2	0	0	0	0.3213	1	6764	6764		1.9064	0	1	24585			51380	6356	29286	29287	63057	63057					0.1857038004768583
VAVKSTVK	8	Unmodified	_VAVKSTVK_					0	0	0			REV__ENST00000505338.1_1_12:40224056-40229511:-|nuORF	REV__ENST00000505338.1_1_12:40224056-40229511:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.91448974609375	2	416.268553	830.522553	0.14715	6.1254E-05	0.78106	0.00032513	0.92821	0.00038639	416.26872582883306	16.506	0.17566	16.443	16.351	16.526	-0.062532					7	5	2	0	0	0	0.3439	1	1327	1327		0.79363	0	1	19456	+		51381	21740	29287	29288	63058	63058					0.10051276765477724
VAVKTKTPV	9	Unmodified	_VAVKTKTPV_					0	0	0			REV__ENSG00000119147|ENST00000238044|ECRG4	REV__ENSG00000119147|ENST00000238044|ECRG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2198181152344	2	471.80276	941.590967	0.13438	6.34E-05	0.55552	0.0002621	0.6899	0.0003255	471.80324472537393	19.632	0.38894	19.516	19.311	19.7	-0.11592					18	12	2	0	0	0	0.25779	1	2288	2288		6.2058	0	1	24215	+		51382	15031	29288	29289	63059	63059					0.11783521345341796
VAVKVLKV	8	Unmodified	_VAVKVLKV_					0	0	0		ENSG00000078061|ENST00000377045|ARAF	ENSG00000078061|ENST00000377045|ARAF	ENSG00000078061|ENST00000377045|ARAF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2502136230469	2	428.304939	854.595324	-0.1134	-4.8569E-05	-0.62626	-0.00026823	-0.73965	-0.0003168	428.30435595366924	33.044	0.24397	33.099	32.931	33.175	0.054371					11	8	2	0	0	0	0.3366	1	6351	6351		7.9102	0	1	91281			51383	1102	29289	29290	63060	63060					0.16221030558904204
VAVMLRLP	8	Unmodified	_VAVMLRLP_					0	0	0		ENST00000558686.5_1_15:102506217-102512799:+|nuORF	ENST00000558686.5_1_15:102506217-102512799:+|nuORF	ENST00000558686.5_1_15:102506217-102512799:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7803955078125	2	449.780773	897.546994	-1.0415	-0.00046844	-0.768	-0.00034543	-1.8095	-0.00081387	449.7803838028226	34.815	1.3562	34.815	34.5	35.856	0					92	48	3	0	0	0	0.45851	1	6864	6864		2.8892	0	1	1025200			51384	11879	29290	29291	63061	63061					0.09412213647328826
VAVQRWAR	8	Unmodified	_VAVQRWAR_					0	0	0		ENSG00000015532|ENST00000017003|XYLT2	ENSG00000015532|ENST00000017003|XYLT2	ENSG00000015532|ENST00000017003|XYLT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.80364990234375	2	493.288143	984.561733	0.10576	5.217E-05	1.0004	0.00049348	1.1061	0.00054565	493.2884266364391	31.329	0.33238	31.371	31.183	31.515	0.042364					15	11	2	0	0	0	0.42758	1	5863	5863		13.508	0.46542	1	112040			51385	483	29291	29292	63062	63062					0.06883421839700077
VAVTLRLRGV	10	Unmodified	_VAVTLRLRGV_					0	0	0		ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000514698.5_1_4:980866-997838:+|nuORF	ENST00000514698.5_1_4:980866-997838:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3365478515625	2	542.353483	1082.69241	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.998	1	96.993	96.493	97.493	-0.0055466								0	0	0	0.38166	1	25955	25955		1.4819	0.95714	1				51386	3318	29292	29293	63063	63063					0.1543739276787619
VAVTQNSI	8	Unmodified	_VAVTQNSI_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.5423583984375	2	416.232168	830.449782	-0.11231	-4.6748E-05	-0.58625	-0.00024402	-0.69856	-0.00029077	416.2323621141716	14.989	0.39766	14.924	14.76	15.158	-0.064413					21	13	3	0	0	0	0.34337	1	960	960		2.3027	0	1	85232	+		51387	16188	29293	29294	63064	63064					0.027775229720305106
VAVTRSRK	8	Unmodified	_VAVTRSRK_					0	0	0		ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.7879333496094	2	458.787976	915.561398	0.26526	0.0001217	-0.26386	-0.00012106	0.0013996	6.4213E-07	458.7878395448706	82.791	1.7459	82.791	82.287	84.033	0					234	67	5	0	0	0	0.4419	2	21623	21623;21762		8.5933	0	1	15662000			51388	7272	29294	29295	63065;63066	63065					0.10024002119848774
VAVTRSRK	8	Unmodified	_VAVTRSRK_					0	0	0		ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7879943847656	2	458.787976	915.561398	0.22068	0.00010125	-0.17923	-8.2229E-05	0.041454	1.9019E-05	458.7878887504455	82.75	1.58	82.823	82.314	83.894	0.073097					251	62	6	0	0	0	0.4419	4	21726	21726;21770;21821;21854		8.5933	0	1	13279000			51389	7272	29294	29295	63067;63068;63069;63070	63067					0.10024002119848774
VAVTRSRK	8	Unmodified	_VAVTRSRK_					0	0	0		ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7879943847656	2	458.787976	915.561398	0.31638	0.00014515	-0.2765	-0.00012686	0.039877	1.8295E-05	458.78785949589906	82.889	1.6537	82.869	82.278	83.931	-0.020576					267	68	6	0	0	0	0.4419	3	21561	21561;21740;21842		8.5933	0	1	16732000			51390	7272	29294	29295	63071;63072;63073	63071					0.10024002119848774
VAVVRPLG	8	Unmodified	_VAVVRPLG_					0	0	0			REV__ENST00000359333.7_1_7:142982057-142982309:+|nuORF	REV__ENST00000359333.7_1_7:142982057-142982309:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.8978576660156	2	405.763438	809.512323	0.17833	7.2359E-05	0.3236	0.0001313	0.50193	0.00020366	405.7634678235407	48.023	0.80891	48.023	47.797	48.606	0					65	28	3	0	0	0	0.32778	1	11089	11089		9.3474	0	1	3785500	+		51391	20242	29295	29296	63074	63074					0.09994713830906221
VAVWGIGTPG	10	Unmodified	_VAVWGIGTPG_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.3081970214844	2	478.763635	955.512717	0.53831	0.00025772	-0.94798	-0.00045386	-0.40967	-0.00019613	478.7633582702549	20.744	0.57264	20.634	20.435	21.007	-0.11003					39	19	3	0	0	0	0.31267	1	2704	2704		14.838	3.198	1	119460			51392	7048	29296	29297	63075	63075					0.033180887601020004
VAWHLLHESLF	11	Unmodified	_VAWHLLHESLF_					0	0	0		nc|ENSG00000102054|Q16576-2|RBBP7;ENSG00000102054|ENST00000380087|RBBP7;ENST00000486166.1_1_X:16871803-16876886:-|nuORF	nc|ENSG00000102054|Q16576-2|RBBP7	nc|ENSG00000102054|Q16576-2|RBBP7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.61865234375	3	451.243429	1350.70846	0.60346	0.00027231	2.6062	0.001176	3.2097	0.0014483	451.24468445847435	33.915	0.32404	33.915	33.78	34.104	0					15	11	2	0	0	0	0.33202	1	6682	6682		5.0475	0.3316	1	60881			51393	1742	29297	29298	63076	63076					0.04713054214107615
VAWLSRAEWD	10	Unmodified	_VAWLSRAEWD_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.884033203125	3	411.540134	1231.59857	-0.10944	-4.5038E-05	4.2889	0.0017651	4.1795	0.00172	411.54038032284524	19.957	0.19332	19.957	19.822	20.016	0					9	6	3	0	0	0	0.31847	1	2364	2364		3.5871	0	1	15967			51394	288	29298	29299	63077	63077					-0.00796371125056794
VAWLSRAEWD	10	Unmodified	_VAWLSRAEWD_					0	0	0		nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-3|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	nc|ENSG00000001497|Q9Y4W2-2|LAS1L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.540134	1231.59857	0.21829	8.9835E-05	0.30973	0.00012747	0.52802	0.0002173	411.54077272076495	19.834	0.408	19.718	19.544	19.952	-0.11592	-0.11939	-0.00067164	NaN	3.5871	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27291			51395	288	29298	29299							-0.00796371125056794
VAYAWTIS	8	Unmodified	_VAYAWTIS_					0	0	0		ENST00000567535.5_1_15:75287957-75305364:+|nuORF	ENST00000567535.5_1_15:75287957-75305364:+|nuORF	ENST00000567535.5_1_15:75287957-75305364:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.258544921875	2	455.737086	909.459619	-0.22215	-0.00010124	-3.5594	-0.0016222	-3.7816	-0.0017234	455.7352465928825	28.135	0.27915	28.136	27.963	28.242	0.0004673					14	9	2	0	0	0	0.34046	1	4855	4855		14.582	0	1	50903			51396	11994	29299	29300	63078	63078					0.0012671097742895654
VAYGKRGY	8	Unmodified	_VAYGKRGY_					0	0	0			REV__ENST00000395850.7_1_11:33730260-33730368:-|nuORF	REV__ENST00000395850.7_1_11:33730260-33730368:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2825622558594	2	457.248152	912.481751	0.016728	7.6491E-06	0.0058097	2.6565E-06	0.022538	1.0306E-05	457.24800199681886	29.052	1.0153	29.066	28.699	29.714	0.013474					66	35	3	0	0	0	0.34046	1	5189	5189		14.582	0	1	330570	+		51397	20644	29300	29301	63079	63079					0.02200935445853247
VAYGRALLQ	9	Unmodified	_VAYGRALLQ_					0	0	0			REV__ENSG00000147383|ENST00000370274|NSDHL	REV__ENSG00000147383|ENST00000370274|NSDHL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2203369140625	2	495.790184	989.565815	0.58765	0.00029135	-0.90903	-0.00045069	-0.32138	-0.00015934	495.78977717178367	52.66	0.73629	52.711	52.337	53.073	0.050571					89	26	5	0	0	0	0.17611	1	12353	12353		20.454	0	1	1028500	+		51398	16384	29301	29302	63080	63080					0.0706146654274562
VAYIQFSCFAK	11	Unmodified	_VAYIQFSCFAK_					0	0	0			REV__ENSG00000101439|ENST00000376925|CST3	REV__ENSG00000101439|ENST00000376925|CST3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.5316162109375	3	426.218003	1275.63218	-0.22315	-9.5112E-05	-0.18787	-8.0076E-05	-0.41103	-0.00017519	426.2199217088139	23.533	0.92666	23.461	23.008	23.935	-0.072559					55	32	3	0	0	0	0.33094	1	3523	3523		7.4771	1.2852	1	54443	+		51399	14272	29302	29303	63081	63081					0.005389143224874715
VAYLALRI	8	Unmodified	_VAYLALRI_					0	0	0		ENSG00000149084|ENST00000278353|HSD17B12;nc|ENSG00000149084|Q53GQ0-2|HSD17B12	ENSG00000149084|ENST00000278353|HSD17B12	ENSG00000149084|ENST00000278353|HSD17B12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.79217529296875	2	459.792195	917.569838	-0.18625	-8.5638E-05	0.13409	6.1654E-05	-0.052162	-2.3984E-05	459.79219201888077	61.635	0.52758	61.626	61.451	61.979	-0.0085526					42	18	3	0	0	0	0.065797	1	15146	15146		70.716	23.795	1	406060			51400	4841	29303	29304	63082	63082					0.10775556036446687
VAYLALRI	8	Unmodified	_VAYLALRI_					0	0	0		ENSG00000149084|ENST00000278353|HSD17B12;nc|ENSG00000149084|Q53GQ0-2|HSD17B12	ENSG00000149084|ENST00000278353|HSD17B12	ENSG00000149084|ENST00000278353|HSD17B12	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	459.792195	917.569838	-0.08376	-3.8512E-05	-0.052945	-2.4344E-05	-0.13671	-6.2856E-05	459.792134336926	61.716	0.50838	61.716	61.437	61.945	0	0.054225	-0.00021108	NaN	70.716	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438810			51401	4841	29303	29304							0.10775556036446687
VAYLALRI	8	Unmodified	_VAYLALRI_					0	0	0		ENSG00000149084|ENST00000278353|HSD17B12;nc|ENSG00000149084|Q53GQ0-2|HSD17B12	ENSG00000149084|ENST00000278353|HSD17B12	ENSG00000149084|ENST00000278353|HSD17B12	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	459.792195	917.569838	-0.30193	-0.00013883	0.33652	0.00015473	0.034589	1.5904E-05	459.79235190392484	61.546	0.52234	61.643	61.429	61.952	0.096989	-0.018818	0.00014706	NaN	70.716	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362920			51402	4841	29303	29304							0.10775556036446687
VAYPLAGLHL	10	Unmodified	_VAYPLAGLHL_					0	0	0			REV__ENSG00000165934|ENST00000298875|CPSF2	REV__ENSG00000165934|ENST00000298875|CPSF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.8713989257812	2	527.30821	1052.60187	0.56416	0.00029749	-0.87862	-0.00046331	-0.31446	-0.00016582	527.3079864468781	62.379	0.639	62.379	62.022	62.661	0					34	23	2	0	0	0	0.28208	1	15418	15418		18.135	0	1	258110	+		51403	17280	29304	29305	63083	63083					0.07766923719623264
VAYRLADQHR	10	Unmodified	_VAYRLADQHR_					0	0	0		ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79828255-79829731:-|nuORF	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5785827636719	3	410.223028	1227.64725	-0.24203	-9.9288E-05	-4.0053	-0.0016431	-4.2473	-0.0017423	410.2217541511997	27.455	0.40856	27.455	27.207	27.615	0					18	13	2	0	0	0	0.31942	1	4704	4704		0.62683	0	1	36417			51404	5405	29305	29306	63084	63084					0.04253542234687302
VCEADKESPLE	11	Unmodified	_VCEADKESPLE_					0	0	0			REV__ENST00000313863.10_2_17:56283353-56285296:-|nuORF	REV__ENST00000313863.10_2_17:56283353-56285296:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.279541015625	2	610.279186	1218.54382	0.48757	0.00029756	-0.10205	-6.2281E-05	0.38552	0.00023528	610.279037034143	67.573	0.59618	67.651	67.488	68.084	0.078041					41	20	3	0	0	0	0.42346	1	17025	17025		8.1555	0.54658	1	411520	+		51405	19923	29306	29307	63085	63085					-0.05671170778668966
VCEDLDHCEF	10	Unmodified	_VCEDLDHCEF_					0	0	0			REV__FBN3|p.V2412Afs*75|1|0.21|ENSG00000142449|chr19:8081458-8081459|GA/-|frameshift_variant	REV__FBN3|p.V2412Afs*75|1|0.21|ENSG00000142449|chr19:8081458-8081459|GA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.21551513671875	3	403.823213	1208.44781	-0.078144	-3.1557E-05	2.0577	0.00083094	1.9795	0.00079938	403.824009718979	21.638	0.42659	21.638	21.368	21.795	0					21	14	2	0	0	0	0.32162	1	2921	2921		0.77653	0.078866	1	48731	+		51406	16116	29307	29308	63086	63086					-0.14807641890388368
VCEIRLSL	8	Unmodified	_VCEIRLSL_					0	0	0		ENST00000609106.5_1_7:124569519-124569627:-|nuORF	ENST00000609106.5_1_7:124569519-124569627:-|nuORF	ENST00000609106.5_1_7:124569519-124569627:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7652893066406	2	466.76532	931.516088	0.18597	8.6802E-05	0.15341	7.1607E-05	0.33938	0.00015841	466.7652785935458	53.53	0.76459	53.53	53.286	54.05	0					67	28	3	0	0	0	0.27047	1	12667	12667		38.176	0	1	1368200			51407	12320	29308	29309	63087	63087					0.04759015542447287
VCFLKVLIG	9	Unmodified	_VCFLKVLIG_					0	0	0			REV__ENST00000483778.5_1_2:242593961-242598937:+|nuORF	REV__ENST00000483778.5_1_2:242593961-242598937:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3039855957031	2	496.304081	990.59361	0.49758	0.00024695	-0.065097	-3.2308E-05	0.43249	0.00021464	496.30394012061043	72.202	1.7999	72.258	71.43	73.23	0.056572					180	65	3	0	0	0	0.34374	1	18518	18518		2.3027	0	1	1122500	+		51408	21523	29309	29310	63088	63088					0.09793653478629949
VCFVKRNR	8	Unmodified	_VCFVKRNR_					0	0	0		ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1	ENSG00000134121|ENST00000256509|CHL1	ENSG00000134121|ENST00000256509|CHL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2920227050781	2	511.289828	1020.5651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.078	1	12.078	11.578	12.578	0								0	0	0	0.37992	1	19	19		0.79363	0.10326	1				51409	3757	29310	29311	63089	63089					0.05564348622056059
VCHHNWLL	8	Unmodified	_VCHHNWLL_					0	0	0		nc|ENSG00000163947|Q9NR81-3|ARHGEF3	nc|ENSG00000163947|Q9NR81-3|ARHGEF3	nc|ENSG00000163947|Q9NR81-3|ARHGEF3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.25457763671875	2	511.255454	1020.49636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.89	1	119.86	119.36	120.36	-0.024361								0	0	0	0.37664	1	30935	30935		2.5775	0.27475	1				51410	12801	29311	29312	63090	63090					-0.013073156776499673
VCKKRFTRR	9	Unmodified	_VCKKRFTRR_					0	0	0		ENSG00000173275|ENST00000339249|ZNF449	ENSG00000173275|ENST00000339249|ZNF449	ENSG00000173275|ENST00000339249|ZNF449	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.3580322265625	2	597.356034	1192.69751	0.34401	0.0002055	1.1148	0.00066594	1.4588	0.00087144	597.3580115867703	100.35	1.162	100.35	99.952	101.11	-0.0069046					379	163	3	0	0	0	0.34681	1	26896	26896		1.8442	0.36234	1	368970			51411	6713	29312	29313	63091	63091					0.10887373358855257
VCLLILTLF	9	Unmodified	_VCLLILTLF_					0	0	0			REV__nc|ENSG00000214128|A2RRL7-2|TMEM213	REV__nc|ENSG00000214128|A2RRL7-2|TMEM213	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8073120117188	2	517.819564	1033.62458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.783	1	37.881	37.381	38.381	0.097527								0	0	0	0.23367	1	7807	7807		11.64	2.2929	1		+		51412	19054	29313	29314	63092	63092					0.10910806792867334
VCLRWVLVTAG	11	Unmodified	_VCLRWVLVTAG_					0	0	0		nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	nc|ENSG00000135476|Q14674-2|ESPL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8475341796875	2	608.847176	1215.6798	0.50749	0.00030899	-0.27175	-0.00016546	0.23574	0.00014353	608.8470185079906	84.018	2.8329	84.001	83.288	86.121	-0.016823					302	115	3	0	0	0	0.44828	1	22007	22007		4.897	4.897	1	2678900			51413	3879	29314	29315	63093	63093					0.08058613313346541
VCLVQPFGVLV	11	Unmodified	_VCLVQPFGVLV_					0	0	0			REV__nc|ENSG00000074755|O43149-2|ZZEF1	REV__nc|ENSG00000074755|O43149-2|ZZEF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.82275390625	2	587.338652	1172.66275	0.01209	7.1009E-06	1.6101	0.00094566	1.6222	0.00095276	587.3396878897156	13.154	0.19617	13.154	12.977	13.174	0					11	6	2	0	0	0	0.33318	1	312	312		1.3295	0	1	16405	+		51414	13793	29315	29316	63094	63094					0.08332692707540446
VCPVLWCSSML	11	Unmodified	_VCPVLWCSSML_					0	0	0			REV__ENST00000325147.13_1_11:205001-205193:-|nuORF	REV__ENST00000325147.13_1_11:205001-205193:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.8108520507812	2	619.29253	1236.57051	0.63857	0.00039546	3.247	0.0020108	3.8855	0.0024063	619.2945539821029	54.793	0.57148	54.793	54.626	55.198	0					27	20	2	0	0	0	0.32736	1	13050	13050		12.241	1.4167	1	279930	+		51415	19995	29316	29317	63095	63095					-0.038314766926532684
VCQHPQCWATI	11	Unmodified	_VCQHPQCWATI_					0	0	0		ENSG00000157653|ENST00000374165|C9orf43	ENSG00000157653|ENST00000374165|C9orf43	ENSG00000157653|ENST00000374165|C9orf43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.22833251953125	3	429.198726	1284.57435	0.62424	0.00026792	2.1738	0.00093299	2.798	0.0012009	429.19955062563974	47.181	0.40247	47.235	47.064	47.466	0.054375					28	14	3	0	0	0	0.33169	1	10661	10661		6.2344	3.6031	1	543540			51416	5319	29317	29318	63096	63096					-0.0565567087458021
VCQHPQCWATI	11	Unmodified	_VCQHPQCWATI_					0	0	0		ENSG00000157653|ENST00000374165|C9orf43	ENSG00000157653|ENST00000374165|C9orf43	ENSG00000157653|ENST00000374165|C9orf43	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	429.198726	1284.57435	-0.10351	-4.4427E-05	3.3349	0.0014313	3.2314	0.0013869	429.2000458179447	47.135	0.53025	47.187	47.014	47.544	0.052574	-0.01808	0.00049293	NaN	3.8459	44	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356930			51417	5319	29317	29318							-0.0565567087458021
VCQRYEMGAPC	11	Unmodified	_VCQRYEMGAPC_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.8750915527344	3	419.512204	1255.51478	0.12722	5.3369E-05	-1.7932	-0.00075228	-1.666	-0.00069891	419.51156875384777	30.624	0.33952	30.652	30.439	30.778	0.027946					21	11	2	0	0	0	0.33094	1	5614	5614		7.4771	0.43998	1	144870	+		51418	14684	29318	29319	63097	63097					-0.10275309880262284
VCRHLGRDWRW	11	Unmodified	_VCRHLGRDWRW_					0	0	0		nc|ENSG00000168397|Q9Y4P1-6|ATG4B;ENSG00000168397|ENST00000404914|ATG4B;nc|ENSG00000168397|Q9Y4P1-2|ATG4B;ENST00000483778.5_1_2:242577129-242598587:+|nuORF;ENST00000465399.5_1_2:242577129-242594780:+|nuORF;ENST00000475195.5_1_2:242577129-242594181:+|nuORF;nc|ENSG00000168397|Q9Y4P1-4|ATG4B;ENST00000482507.5_1_2:242592964-242610957:+|nuORF;ENST00000494465.5_1_2:242592964-242606150:+|nuORF;ENST00000493618.5_1_2:242577129-242598937:+|nuORF;nc|ENSG00000168397|Q9Y4P1-3|ATG4B	nc|ENSG00000168397|Q9Y4P1-6|ATG4B	nc|ENSG00000168397|Q9Y4P1-6|ATG4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2553405761719	3	495.254445	1482.7415	0.55648	0.0002756	0.020918	1.036E-05	0.57739	0.00028596	495.2548177410804	33.484	1.2982	33.551	32.656	33.955	0.06636					130	46	4	0	0	0	0.46704	1	6415	6415		2.4348	0	1	740010			51419	6272	29319	29320	63098	63098					0.019443577851916416
VCTKHKSKKD	10	Unmodified	_VCTKHKSKKD_					0	0	0			REV__ENST00000564233.5_1_16:30017553-30018576:-|nuORF	REV__ENST00000564233.5_1_16:30017553-30018576:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.3256225585938	2	587.324065	1172.63358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.94	1	103.95	103.45	104.45	0.0082703								0	0	0	0.37664	1	27617	27617		3.5965	0.31518	1		+		51420	16487	29320	29321	63099	63099					0.05416548411244548
VCTKKLGK	8	Unmodified	_VCTKKLGK_					0	0	0			REV__ENSG00000106125|ENST00000265299|MINDY4	REV__ENSG00000106125|ENST00000265299|MINDY4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.77008056640625	2	438.770406	875.526258	0.20497	8.9936E-05	-0.72216	-0.00031686	-0.51719	-0.00022693	438.7699338588922	29.055	0.81409	29.055	28.845	29.659	0					63	29	3	0	0	0	0.45015	1	5175	5175		5.7604	5.7604	1	996210	+		51421	14511	29321	29322	63100	63100					0.08351623267674313
VCWKGRSKF	9	Unmodified	_VCWKGRSKF_					0	0	0			REV__nc|ENSG00000095485|Q69YN2-2|CWF19L1	REV__nc|ENSG00000095485|Q69YN2-2|CWF19L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.79638671875	2	555.797486	1109.58042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.75	1	113.74	113.24	114.24	-0.017303								0	0	0	0.2646	1	29561	29561		1.6526	0	1		+		51422	14101	29322	29323	63101	63101					0.030012154192490925
VDAEMEGRSVF	11	Unmodified	_VDAEMEGRSVF_					0	0	0			REV__nc|ENSG00000108852|Q14168-5|MPP2	REV__nc|ENSG00000108852|Q14168-5|MPP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.26605224609375	3	413.860656	1238.56014	0.22037	9.1201E-05	2.048	0.0008476	2.2684	0.0009388	414.1959885905422	23.338	0.44019	23.294	23.06	23.5	-0.044867					36	15	3	0	0	0	0.33119	1	3465	3465		2.6312	0.88896	1	37780	+		51423	14614	29323	29324	63102	63102					-0.04960044821905285
VDAEQNLAYP	10	Unmodified	_VDAEQNLAYP_					0	0	0			REV__nc|ENSG00000105991|P49639-3|HOXA1	REV__nc|ENSG00000105991|P49639-3|HOXA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2698974609375	2	560.269478	1118.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.632	1	91.632	91.132	92.132	0								0	0	0	0.37664	1	24339	24339		3.5965	0	1		+		51424	14498	29324	29325	63103	63103					-0.030117590072450184
VDAYQKVS	8	Unmodified	_VDAYQKVS_					0	0	0			REV__nc|ENSG00000165119|P61978-3|HNRNPK	REV__nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.578857421875	2	455.23745	908.460347	0.0086052	3.9174E-06	0.43967	0.00020015	0.44827	0.00020407	455.23745224683296	23.907	0.89388	23.907	23.419	24.312	0					36	30	2	0	0	0	0.34408	1	3470	3470		2.3027	0	1	124080	+		51425	17208	29325	29326	63104	63104					0.0024550562648073537
VDAYQKVS	8	Unmodified	_VDAYQKVS_					0	0	0			REV__nc|ENSG00000165119|P61978-3|HNRNPK	REV__nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	455.23745	908.460347	0.14073	6.4067E-05	-0.081576	-3.7137E-05	0.059157	2.693E-05	455.2372949825057	24.089	0.77276	24.017	23.614	24.387	-0.072559	0.037037	-0.00011868	NaN	2.3027	37	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111250	+		51426	17208	29325	29326							0.0024550562648073537
VDAYQKVS	8	Unmodified	_VDAYQKVS_					0	0	0			REV__nc|ENSG00000165119|P61978-3|HNRNPK	REV__nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	455.23745	908.460347	0.17387	7.915E-05	-0.22867	-0.0001041	-0.054805	-2.4949E-05	455.2373942195456	24.054	0.57079	24.015	23.765	24.336	-0.038927	0.035501	-0.00025261	NaN	2.3027	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127700	+		51427	17208	29325	29326							0.0024550562648073537
VDDSEKDIL	9	Unmodified	_VDDSEKDIL_					0	0	0			REV__nc|ENSG00000148835|Q15542-2|TAF5	REV__nc|ENSG00000148835|Q15542-2|TAF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.25634765625	2	517.256037	1032.49752	0.45907	0.00023745	0.72674	0.00037591	1.1858	0.00061337	517.2563333648992	46.688	1.1365	46.743	46.355	47.491	0.054375					91	40	3	0	0	0	0.29176	1	10572	10572		10.074	0	1	1424300	+		51428	16439	29326	29327	63105	63105					-0.017428676184181313
VDELAIKR	8	Unmodified	_VDELAIKR_					0	0	0			REV__ENSG00000101654|ENST00000383314|RNMT	REV__ENSG00000101654|ENST00000383314|RNMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7979736328125	2	472.282192	942.549831	-0.035832	-1.6923E-05	-2.2097	-0.0010436	-2.2455	-0.0010605	472.28125467797827	25.602	0.67725	25.602	25.091	25.769	0					30	22	2	0	0	0	0.3366	1	4019	4019		12.532	0	1	164440	+		51429	14282	29327	29328	63106	63106					0.0762576030585933
VDFTFNKF	8	Unmodified	_VDFTFNKF_					0	0	0		ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	ENSG00000082781|ENST00000296181|ITGB5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8105773925781	2	509.255643	1016.49673	0.36675	0.00018677	-0.021261	-1.0827E-05	0.34549	0.00017594	509.255498538951	58.812	0.72485	58.798	58.553	59.278	-0.014267					62	25	4	0	0	0	0.34092	1	14341	14341		8.5933	0	1	1239900			51430	1209	29328	29329	63107	63107					-0.010856174768150595
VDGLLHQLTLQ	11	Unmodified	_VDGLLHQLTLQ_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;ENST00000393966.1_1_16:67315041-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8770141601562	2	618.85097	1235.68739	0.70113	0.00043389	3.9143	0.0024223	4.6154	0.0028562	618.8529394223013	77.951	0.39909	77.951	77.796	78.195	0					34	14	4	0	0	0	0.37585	1	20155	20155		14.405	0.79051	1	141060			51431	7829	29329	29330	63108	63108					0.07897044114611163
VDGLLHQLTLQ	11	Unmodified	_VDGLLHQLTLQ_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;ENST00000393966.1_1_16:67315041-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	618.85097	1235.68739	0.47953	0.00029676	2.9509	0.0018262	3.4304	0.0021229	618.8528074942604	77.881	0.3692	77.936	77.792	78.161	0.05542	-0.013647	-7.2768E-05	NaN	14.405	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167400			51432	7829	29329	29330							0.07897044114611163
VDGLLHQLTLQ	11	Unmodified	_VDGLLHQLTLQ_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;ENST00000393966.1_1_16:67315041-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	618.85097	1235.68739	0.75677	0.00046833	2.8268	0.0017493	3.5835	0.0022177	618.8528100410986	77.992	0.38666	77.962	77.759	78.146	-0.030434	0.0122	-0.0002264	NaN	14.405	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177200			51433	7829	29329	29330							0.07897044114611163
VDHQGRRGGGA	11	Unmodified	_VDHQGRRGGGA_					0	0	0		ENST00000592604.5_1_19:11145672-11145717:+|nuORF	ENST00000592604.5_1_19:11145672-11145717:+|nuORF	ENST00000592604.5_1_19:11145672-11145717:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2799072265625	2	555.281577	1108.5486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.51	1	114.51	114.01	115.01	0								0	0	0	0.38137	1	29708	29708		1.0715	0.27783	1				51434	12198	29330	29331	63109	63109					-0.001330610103195795
VDIAIFQL	8	Unmodified	_VDIAIFQL_					0	0	0		nc|ENSG00000106305|Q13155-2|AIMP2;ENSG00000106305|ENST00000223029|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.6276550292969	2	459.768386	917.522219	0.013973	6.4245E-06	-0.15992	-7.3525E-05	-0.14594	-6.7101E-05	459.7683850723991	94.573	0.51939	94.656	94.416	94.936	0.082779					65	41	2	0	0	0	0.34198	1	25271	25271		10.824	0	1	142680			51435	2070	29331	29332	63110	63110					0.060158570455996596
VDIAIFQL	8	Unmodified	_VDIAIFQL_					0	0	0		nc|ENSG00000106305|Q13155-2|AIMP2;ENSG00000106305|ENST00000223029|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	459.768386	917.522219	-0.11369	-5.2271E-05	-0.02277	-1.0469E-05	-0.13646	-6.274E-05	459.768381082927	94.689	0.53371	94.689	94.463	94.997	0	-0.0884	8.0388E-05	NaN	10.824	75	47	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83782			51436	2070	29331	29332							0.060158570455996596
VDIAIFQL	8	Unmodified	_VDIAIFQL_					0	0	0		nc|ENSG00000106305|Q13155-2|AIMP2;ENSG00000106305|ENST00000223029|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	nc|ENSG00000106305|Q13155-2|AIMP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	459.768386	917.522219	0.24821	0.00011412	-0.97357	-0.00044762	-0.72536	-0.0003335	459.7678896154817	94.99	0.066742	94.988	94.948	95.015	-0.0020142	0.20994	-0.00079391	NaN	10.824	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43433			51437	2070	29331	29332							0.060158570455996596
VDIEHLSVT	9	Unmodified	_VDIEHLSVT_					0	0	0			REV__nc|ENSG00000183207|Q9Y230-2|RUVBL2	REV__nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.22845458984375	2	506.769114	1011.52368	0.7069	0.00035823	1.5813	0.00080133	2.2882	0.0011596	506.7700514563655	78.288	0.81941	78.288	78.033	78.852	0					39	30	2	0	0	0	0.25202	1	20306	20306		10.824	0.75	1	100630	+		51438	18245	29332	29333	63111	63111					0.01837446343722604
VDIKDLFY	8	Unmodified	_VDIKDLFY_					0	0	0			REV__ENST00000487981.5_1_20:57478601-57484479:+|nuORF	REV__ENST00000487981.5_1_20:57478601-57484479:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2286071777344	2	506.771126	1011.5277	0.58283	0.00029536	-1.7594	-0.00089161	-1.1766	-0.00059625	506.7700660405663	78.093	0.65332	78.151	78.03	78.683	0.058151					32	23	2	0	0	0	0.33661	1	20235	20235		19.257	2.3147	1	94394	+		51439	13996	29333	29334	63112	63112					0.02239535837418316
VDKKETEVTRW	11	Unmodified	_VDKKETEVTRW_					0	0	0		nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4	nc|ENSG00000108389|Q9NYA4|MTMR4	nc|ENSG00000108389|Q9NYA4|MTMR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.8009033203125	3	464.249019	1389.72523	0.34224	0.00015888	-0.060607	-2.8137E-05	0.28163	0.00013075	464.24886624692215	38.681	1.2131	38.779	38.378	39.591	0.097527					100	43	5	0	0	0	0.33296	1	8236	8236		1.2148	0	1	3377200			51440	2183	29334	29335	63113	63113					0.045955103094229344
VDKNGRLVY	9	Unmodified	_VDKNGRLVY_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8161010742188	2	532.298373	1062.58219	0.47985	0.00025542	-3.4545	-0.0018388	-2.9747	-0.0015834	532.2944582302013	85.893	0.82516	85.977	85.592	86.417	0.084251					48	30	3	0	0	0	0.25323	1	22534	22534		10.074	1.4806	1	112270			51441	976	29335	29336	63114	63114					0.05340547708851773
VDKNGRLVY	9	Unmodified	_VDKNGRLVY_					0	0	0		ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	ENSG00000072274|ENST00000360110|TFRC	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	532.298373	1062.58219	0.68804	0.00036624	-7.1255	-0.0037929	-6.4375	-0.0034266	532.2944287055839	86.077	0.53664	86.077	85.688	86.224	0	0.059669	-0.00018164	NaN	10.074	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102700			51442	976	29335	29336							0.05340547708851773
VDLAKRTL	8	Unmodified	_VDLAKRTL_					0	0	0		ENSG00000164609|ENST00000297151|SLU7	ENSG00000164609|ENST00000297151|SLU7	ENSG00000164609|ENST00000297151|SLU7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2992858886719	2	458.284734	914.554916	-0.22189	-0.00010169	0.47913	0.00021958	0.25724	0.00011789	458.2835810164548	97.262	0.12625	97.262	97.193	97.32	0					16	10	2	0	0	0	0.41758	1	26013	26013		16.942	3.4344	1	23408			51443	5855	29336	29337	63115	63115					0.09422064168484212
VDLILKESR	9	Unmodified	_VDLILKESR_					0	0	0			REV__ENSG00000122483|ENST00000690025|CCDC18	REV__ENSG00000122483|ENST00000690025|CCDC18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2777099609375	2	536.821681	1071.62881	0.62185	0.00033382	-0.022844	-1.2263E-05	0.59901	0.00032156	536.821554284423	40.632	0.45729	40.632	40.445	40.902	0					42	16	3	0	0	0	0.24993	1	8761	8761		8.7454	0.58988	1	363850	+		51444	15159	29337	29338	63116	63116					0.09585987540140195
VDLKLKVP	8	Unmodified	_VDLKLKVP_					0	0	0			REV__ENST00000534553.5_1_11:61722629-61730618:+|nuORF	REV__ENST00000534553.5_1_11:61722629-61730618:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2870178222656	2	456.299853	910.585153	0.10868	4.959E-05	2.8147	0.0012843	2.9234	0.0013339	456.30103952322617	37.988	0.72158	38.085	37.796	38.517	0.097527					39	25	2	0	0	0	0.44569	1	7935	7935		7.2892	0.56607	1	156010	+		51445	22053	29338	29339	63117	63117					0.1262842283365444
VDLLWEAF	8	Unmodified	_VDLLWEAF_					0	0	0			REV__nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	REV__nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.75787353515625	2	496.758018	991.501483	-0.0048375	-2.4031E-06	-0.095336	-4.7359E-05	-0.10017	-4.9762E-05	496.7579109781	106.46	0.12553	106.46	106.4	106.53	0					34	19	2	0	0	0	0.38703	2	28137	28137;28141		20.871	1.4322	1	2315500	+		51446	16540	29339	29340	63118;63119	63118					0.005392666659531642
VDLLWEAF	8	Unmodified	_VDLLWEAF_					0	0	0			REV__nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	REV__nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7579345703125	2	496.758018	991.501483	0.30324	0.00015064	-0.15382	-7.6413E-05	0.14942	7.4223E-05	496.757857088	106.47	0.10049	106.48	106.42	106.53	0.0050583					35	15	3	0	0	0	0.38703	2	28181	28181;28183		20.871	1.4322	1	2311000	+		51447	16540	29339	29340	63120;63121	63120					0.005392666659531642
VDLRPREV	8	Unmodified	_VDLRPREV_					0	0	0		ENST00000455575.1_1_7:86848849-86849557:-|nuORF	ENST00000455575.1_1_7:86848849-86849557:-|nuORF	ENST00000455575.1_1_7:86848849-86849557:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7537536621094	2	492.285266	982.555979	0.67749	0.00033352	2.7893	0.0013731	3.4668	0.0017067	492.2859765840053	37.55	0.67104	37.55	37.285	37.956	0					42	23	3	0	0	0	0.34272	1	7665	7665		7.9102	0	1	162700			51448	10688	29340	29341	63122	63122					0.06400278537375925
VDLRPREV	8	Unmodified	_VDLRPREV_					0	0	0		ENST00000455575.1_1_7:86848849-86849557:-|nuORF	ENST00000455575.1_1_7:86848849-86849557:-|nuORF	ENST00000455575.1_1_7:86848849-86849557:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	492.285266	982.555979	0.424	0.00020873	0.90985	0.00044791	1.3339	0.00065664	492.28548843837353	37.444	0.62585	37.532	37.305	37.93	0.087406	-0.0092199	-0.00034422	NaN	7.9102	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146110			51449	10688	29340	29341							0.06400278537375925
VDNILYIY	8	Unmodified	_VDNILYIY_					0	0	0			REV__LTR102_Mam_dup160|chr6:31178333-31178586:-|1.6740034964844457|0.4104768247937383|2.03|541.0|1|1|sense	REV__LTR102_Mam_dup160|chr6:31178333-31178586:-|1.6740034964844457|0.4104768247937383|2.03|541.0|1|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2284240722656	2	506.771126	1011.5277	0.79909	0.00040496	-2.3249	-0.0011782	-1.5258	-0.00077326	506.76986141516517	78.28	0.44618	78.25	78.034	78.48	-0.030426					25	16	2	0	0	0	0.34092	1	20298	20298		13.508	0	1	141380	+		51450	22838	29341	29342	63123	63123					0.022395358374069474
VDNLIKHTV	9	Unmodified	_VDNLIKHTV_					0	0	0		ENSG00000165730|ENST00000298596|STOX1	ENSG00000165730|ENST00000298596|STOX1	ENSG00000165730|ENST00000298596|STOX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3325805664062	2	519.800749	1037.58694	0.50734	0.00026372	0.39408	0.00020484	0.90142	0.00046856	519.8008831596966	36.277	0.88171	36.359	35.928	36.809	0.082355					55	31	2	0	0	0	0.25779	1	7476	7476		6.2058	0.97511	1	574540			51451	5997	29342	29343	63124	63124					0.06965431851608628
VDNSNFAPR	9	Unmodified	_VDNSNFAPR_					0	0	0		ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.248779296875	2	510.24888	1018.48321	0.21547	0.00010995	-0.28222	-0.000144	-0.066746	-3.4057E-05	510.2485192043268	24.079	0.62503	24.079	23.829	24.454	0					28	21	2	0	0	0	0.28674	1	3658	3658		10.824	2.9138	1	61143			51452	1837	29343	29344	63125	63125					-0.02529475256051228
VDNSNFAPR	9	Unmodified	_VDNSNFAPR_					0	0	0		ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	510.24888	1018.48321	0.26875	0.00013713	-0.059035	-3.0123E-05	0.20971	0.000107	510.2486072511852	24.247	0.56464	24.174	23.879	24.443	-0.072559	0.03369	0.00014005	NaN	10.824	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66813			51453	1837	29343	29344							-0.02529475256051228
VDNSNFAPR	9	Unmodified	_VDNSNFAPR_					0	0	0		ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	510.24888	1018.48321	0.21433	0.00010936	-0.34113	-0.00017406	-0.1268	-6.47E-05	510.2483882260006	24.206	0.5408	24.167	23.878	24.418	-0.038927	0.027102	-0.00014783	NaN	10.824	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58447			51454	1837	29343	29344							-0.02529475256051228
VDPRRGRSI	9	Unmodified	_VDPRRGRSI_					0	0	0			REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7279052734375	2	528.307064	1054.59957	0.64347	0.00033995	0.91493	0.00048336	1.5584	0.00082331	528.3074777363809	52.794	0.52685	52.845	52.579	53.106	0.050571					31	18	3	0	0	0	0.24848	1	12464	12464		9.3831	9.3831	1	338870	+		51455	16464	29344	29345	63126	63126					0.07445888034521886
VDPTSIPLGL	10	Unmodified	_VDPTSIPLGL_					0	0	0			REV__ENSG00000233757|ENST00000425953|ZNF892	REV__ENSG00000233757|ENST00000425953|ZNF892	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7587585449219	2	506.289682	1010.56481	0.4239	0.00021462	1.1958	0.0006054	1.6197	0.00082002	506.290208062876	45.124	0.64902	45.124	44.909	45.558	0					40	23	2	0	0	0	0.26638	1	10058	10058		30.637	11.38	1	381080	+		51456	19140	29345	29346	63127	63127					0.059952073831937014
VDQPIVKT	8	Unmodified	_VDQPIVKT_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF;ENST00000586276.5_1_17:42937766-42940268:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7609558105469	2	450.263468	898.512382	0.16689	7.5146E-05	-1.1626	-0.00052348	-0.99572	-0.00044833	450.26342398181816	23.145	1.2258	23.1	22.817	24.043	-0.044867					95	43	3	0	0	0	0.37937	1	3475	3475		21.747	0	1	1932000			51457	2224	29346	29347	63128	63128					0.05906669040234647
VDRATIDLC	9	Unmodified	_VDRATIDLC_					0	0	0			REV__ENST00000560942.2_3_15:69726998-69727352:-|nuORF	REV__ENST00000560942.2_3_15:69726998-69727352:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2556457519531	2	503.255317	1004.49608	0.45759	0.00023029	0.09432	4.7467E-05	0.55191	0.00027775	503.2553689068214	57.028	0.77257	57.009	56.78	57.553	-0.019077					38	27	2	0	0	0	0.079752	1	13719	13719		41.84	9.5341	1	700440	+		51458	22300	29347	29348	63129	63129					-0.005987801881815358
VDRERPRVLV	10	Unmodified	_VDRERPRVLV_					0	0	0			REV__ENST00000489430.1_1_1:228296601-228296928:-|nuORF	REV__ENST00000489430.1_1_1:228296601-228296928:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8206176757812	2	619.870028	1237.7255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.354	1	12.286	11.786	12.786	-0.06806								0	0	0	0.38202	1	101	101		0.40072	0	1		+		51459	21592	29348	29349	63130	63130					0.11614974819917734
VDRPQRFETA	10	Unmodified	_VDRPQRFETA_					0	0	0		ENST00000584265.1_1_17:60749371-60749413:+|nuORF	ENST00000584265.1_1_17:60749371-60749413:+|nuORF	ENST00000584265.1_1_17:60749371-60749413:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.8796691894531	3	406.879038	1217.61528	-0.39775	-0.00016184	0.38456	0.00015647	-0.013184	-5.3644E-06	406.87925109530494	13.89	0.6768	13.89	13.63	14.307	0					82	23	5	0	0	0	0.37823	2	541	541;588		7.4771	2.4295	1	647340			51460	12093	29349	29350	63131;63132	63131					0.015181297608933164
VDRPQRFETA	10	Unmodified	_VDRPQRFETA_					0	0	0		ENST00000584265.1_1_17:60749371-60749413:+|nuORF	ENST00000584265.1_1_17:60749371-60749413:+|nuORF	ENST00000584265.1_1_17:60749371-60749413:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.8789978027344	3	406.879038	1217.61528	-0.37276	-0.00015167	0.4642	0.00018887	0.091442	3.7206E-05	406.8791531315489	13.964	0.82301	13.898	13.632	14.455	-0.066068					77	28	5	0	0	0	0.38952	1	621	621		5.4027	0	1	752600			51461	12093	29349	29350	63133	63133					0.015181297608933164
VDSFHDGDEST	11	Unmodified	_VDSFHDGDEST_					0	0	0			REV__nc|ENSG00000165671|Q96L73-2|NSD1	REV__nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.3673095703125	2	604.738739	1207.46293	0.59127	0.00035756	0.2022	0.00012228	0.79346	0.00047984	604.7387213289481	33.519	0.33451	33.519	33.393	33.728	0					15	11	2	0	0	0	0.33324	1	6486	6486		1.1933	0	1	100720	+		51462	17252	29350	29351	63134	63134					-0.1325073549719491
VDSFLPHRKL	10	Unmodified	_VDSFLPHRKL_					0	0	0			REV__nc|ENSG00000120539|Q96GX5-2|MASTL	REV__nc|ENSG00000120539|Q96GX5-2|MASTL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3707275390625	2	606.348397	1210.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.92	1	115.92	115.42	116.42	0								0	0	0	0.38202	1	30029	30029		0.40072	0	1		+		51463	15086	29351	29352	63135	63135					0.08532785042666546
VDSHRRQL	8	Unmodified	_VDSHRRQL_					0	0	0			REV__nc|ENSG00000256977|P0CW19-2|LIMS3	REV__nc|ENSG00000256977|P0CW19-2|LIMS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7783203125	2	505.778139	1009.54173	0.28156	0.00014241	0.21006	0.00010624	0.49163	0.00024865	505.7781135288874	21.799	0.78622	21.799	21.517	22.303	0					67	28	3	0	0	0	0.34353	1	3070	3070		4.756	4.756	1	300490	+		51464	19253	29352	29353	63136	63136					0.037336261090899825
VDSKIIPFNI	10	Unmodified	_VDSKIIPFNI_					0	0	0		ENSG00000077616|ENST00000534061|NAALAD2	ENSG00000077616|ENST00000534061|NAALAD2	ENSG00000077616|ENST00000534061|NAALAD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.3306274414062	2	573.331882	1144.64921	0.32721	0.0001876	-1.8477	-0.0010593	-1.5204	-0.00087172	573.3307536854752	23.825	0.51532	23.786	23.534	24.049	-0.038927					32	17	3	0	0	0	0.37751	1	3558	3558		7.609	1.4032	1	82476			51465	1096	29353	29354	63137	63137					0.0826715819994206
VDSKIIPFNI	10	Unmodified	_VDSKIIPFNI_					0	0	0		ENSG00000077616|ENST00000534061|NAALAD2	ENSG00000077616|ENST00000534061|NAALAD2	ENSG00000077616|ENST00000534061|NAALAD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	573.331882	1144.64921	0.063487	3.6399E-05	-2.0566	-0.0011791	-1.9932	-0.0011427	573.3306767254196	23.565	0.49496	23.565	23.362	23.857	0	-0.10058	-1.3432E-05	NaN	7.609	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91814			51466	1096	29353	29354							0.0826715819994206
VDSKIIPFNI	10	Unmodified	_VDSKIIPFNI_					0	0	0		ENSG00000077616|ENST00000534061|NAALAD2	ENSG00000077616|ENST00000534061|NAALAD2	ENSG00000077616|ENST00000534061|NAALAD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	573.331882	1144.64921	0.2626	0.00015056	-2.1876	-0.0012542	-1.925	-0.0011036	573.3305120265367	23.719	0.60178	23.646	23.396	23.997	-0.072559	-0.019573	-0.00016357	NaN	7.609	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102710			51467	1096	29353	29354							0.0826715819994206
VDTYTLHRR	9	Unmodified	_VDTYTLHRR_					0	0	0		ENST00000530047.5_1_8:145584671-145584875:+|nuORF	ENST00000530047.5_1_8:145584671-145584875:+|nuORF	ENST00000530047.5_1_8:145584671-145584875:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8129272460938	2	580.812179	1159.60981	0.24985	0.00014511	-0.22173	-0.00012878	0.028115	1.633E-05	580.8119314256722	17.036	0.61278	17.036	16.839	17.452	0					50	21	4	0	0	0	0.34809	1	1584	1584		1.6526	0.17072	1	258930			51468	11612	29354	29355	63138	63138					0.03638450969083351
VDVELLRI	8	Unmodified	_VDVELLRI_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.77606201171875	2	478.792392	955.570232	0.34634	0.00016583	2.6626	0.0012748	3.009	0.0014407	478.7944292616831	82.296	0.91382	82.275	82.061	82.975	-0.020584					89	35	4	0	0	0	0.41758	1	21645	21645		16.942	0	1	825250	+		51469	16075	29355	29356	63139	63139					0.09066930965661868
VDVPVDQV	8	Unmodified	_VDVPVDQV_					0	0	0			REV__nc|ENSG00000090061|O75909-2|CCNK	REV__nc|ENSG00000090061|O75909-2|CCNK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.576171875	2	435.732	869.449448	-0.00048722	-2.123E-07	-0.33144	-0.00014442	-0.33193	-0.00014463	435.7318435843997	38.269	1.8916	38.367	37.503	39.394	0.097527					106	68	2	0	0	0	0.3366	1	7854	7854		7.9102	0	1	267710	+		51470	14038	29356	29357	63140	63140					0.009501032521939123
VDVRPTLVLVE	11	Unmodified	_VDVRPTLVLVE_					0	0	0		ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	ENSG00000115020|ENST00000264380|PIKFYVE	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.371826171875	2	620.368995	1238.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.543	1	98.536	98.036	99.036	-0.0068283								0	0	0	0.37609	1	26405	26405		2.4985	0.21571	1				51471	2602	29357	29358	63141	63141					0.11362501291455374
VDVSKNFDTE	10	Unmodified	_VDVSKNFDTE_					0	0	0			REV__SRCIN1|p.F860V|1|0.31|ENSG00000277363|chr17:38552035-38552035|A/C|missense_variant	REV__SRCIN1|p.F860V|1|0.31|ENSG00000277363|chr17:38552035-38552035|A/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.2719116210938	2	577.272218	1152.52988	0.25243	0.00014572	0.62146	0.00035875	0.87389	0.00050447	577.2727408515377	21.589	1.136	21.589	21.254	22.39	0					130	40	5	0	0	0	0.41085	1	3073	3073		1.4819	0	1	2765200	+		51472	23309	29358	29359	63142	63142					-0.04028080215448426
VDVSKNFDTE	10	Unmodified	_VDVSKNFDTE_					0	0	0			REV__SRCIN1|p.F860V|1|0.31|ENSG00000277363|chr17:38552035-38552035|A/C|missense_variant	REV__SRCIN1|p.F860V|1|0.31|ENSG00000277363|chr17:38552035-38552035|A/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.2722778320312	2	577.272218	1152.52988	0.22829	0.00013179	0.65373	0.00037738	0.88202	0.00050917	577.27274855414	21.614	1.4904	21.564	21.265	22.755	-0.049377					144	52	5	0	0	0	0.41085	1	3099	3099		1.4819	0	1	3067500	+		51473	23309	29358	29359	63143	63143					-0.04028080215448426
VDWQVCSL	8	Unmodified	_VDWQVCSL_					0	0	0			REV__ENST00000481677.1_1_1:160808287-160808924:-|nuORF	REV__ENST00000481677.1_1_1:160808287-160808924:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.91259765625	2	475.226028	948.437503	0.2702	0.00012841	0.83945	0.00039893	1.1096	0.00052733	475.22654549704555	20.965	0.6008	20.965	20.709	21.31	0					29	20	2	0	0	0	0.34367	1	2703	2703		4.3292	0	1	74617	+		51474	21492	29359	29360	63144	63144					-0.038778367626377985
VDYLSLKQA	9	Unmodified	_VDYLSLKQA_					0	0	0			REV__ENST00000416277.5_1_2:98795767-98809363:+|nuORF	REV__ENST00000416277.5_1_2:98795767-98809363:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2793579101562	2	518.787307	1035.56006	0.27904	0.00014476	0.10618	5.5083E-05	0.38522	0.00019985	518.7874645582583	93.559	0.47694	93.646	93.353	93.83	0.08667					42	37	2	0	0	0	0.22596	1	24857	24857		21.747	0	1	106420	+		51475	17471	29360	29361	63145	63145					0.04370323240414109
VEAALKMV	8	Oxidation (M)	_VEAALKM(Oxidation (M))V_		VEAALKM(1)V		VEAALKM(52)V	0	0	1		ENST00000490895.5_1_2:131100487-131100517:+|nuORF	ENST00000490895.5_1_2:131100487-131100517:+|nuORF	ENST00000490895.5_1_2:131100487-131100517:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.7464599609375	2	438.746596	875.478639	0.12659	5.5541E-05	-0.39113	-0.00017161	-0.26455	-0.00011607	438.7463870801906	37.916	1.1461	38.007	37.638	38.784	0.090881					93	41	4	0	0	0	0.14707	1	7845	7845		52.268	7.8613	1	1544500			51476	11168	29361	29362	63146	63146		951			0.03591924276827285
VEACCMHCS	9	Unmodified	_VEACCMHCS_					0	0	0		ENST00000507668.6_1_5:79438544-79438895:-|nuORF	ENST00000507668.6_1_5:79438544-79438895:-|nuORF	ENST00000507668.6_1_5:79438544-79438895:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.253662109375	2	491.666108	981.317664	0.32667	0.00016061	-0.35325	-0.00017368	-0.026577	-1.3067E-05	491.66591628375284	17.341	0.61382	17.341	17.014	17.628	0					31	21	2	0	0	0	0.26251	1	1524	1524		0.6015	0	1	41006			51477	11339	29362	29363	63147	63147					-0.17374232694726288
VEACCMHCS	9	Unmodified	_VEACCMHCS_					0	0	0		ENST00000507668.6_1_5:79438544-79438895:-|nuORF	ENST00000507668.6_1_5:79438544-79438895:-|nuORF	ENST00000507668.6_1_5:79438544-79438895:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	491.666108	981.317664	0.15613	7.6766E-05	0.26249	0.00012906	0.41863	0.00020582	491.66614401171944	17.525	0.61348	17.407	17.081	17.694	-0.11739	0.053048	0.0002988	NaN	0.6015	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44547			51478	11339	29362	29363							-0.17374232694726288
VEACCMHCS	9	Unmodified	_VEACCMHCS_					0	0	0		ENST00000507668.6_1_5:79438544-79438895:-|nuORF	ENST00000507668.6_1_5:79438544-79438895:-|nuORF	ENST00000507668.6_1_5:79438544-79438895:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.666108	981.317664	0.33199	0.00016323	-0.13908	-6.8382E-05	0.19291	9.4847E-05	491.6659504044502	17.375	0.67837	17.315	17.026	17.704	-0.060429	-0.039472	-9.6085E-05	NaN	0.6015	32	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57716			51479	11339	29362	29363							-0.17374232694726288
VEAGLGAKQLC	11	Unmodified	_VEAGLGAKQLC_					0	0	0			REV__PTPRB|p.V139Sfs*68|1|0.21|ENSG00000127329|chr12:70596239-70596239|T/-|frameshift_variant	REV__PTPRB|p.V139Sfs*68|1|0.21|ENSG00000127329|chr12:70596239-70596239|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7918701171875	2	544.792066	1087.56958	0.38166	0.00020793	1.1894	0.00064796	1.571	0.00085588	544.7919209096173	119.16	0.73373	119.14	118.9	119.63	-0.024155					132	91	2	0	0	0	0.46277	1	30839	30839		2.9952	0	1	17232	+		51480	15337	29363	29364	63148	63148					0.02929768254307419
VEAKRIFK	8	Unmodified	_VEAKRIFK_					0	0	0		ENSG00000145384|ENST00000274024|FABP2	ENSG00000145384|ENST00000274024|FABP2	ENSG00000145384|ENST00000274024|FABP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2672119140625	2	495.808377	989.6022	-0.64608	-0.00032033	0.16982	8.4198E-05	-0.47626	-0.00023613	495.808335908107	35.053	0.32592	35.128	34.963	35.288	0.075306					14	11	2	0	0	0	0.3408	1	7005	7005		10.074	0	1	116120			51481	4645	29364	29365	63149	63149					0.10698343439469227
VEAKRIFK	8	Unmodified	_VEAKRIFK_					0	0	0		ENSG00000145384|ENST00000274024|FABP2	ENSG00000145384|ENST00000274024|FABP2	ENSG00000145384|ENST00000274024|FABP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.26611328125	2	495.808377	989.6022	-0.69586	-0.00034501	0.41253	0.00020454	-0.28333	-0.00014048	495.8083067591962	35.002	0.30807	35.079	34.975	35.283	0.077377					17	10	2	0	0	0	0.3408	1	6935	6935		10.074	0	1	76394			51482	4645	29364	29365	63150	63150					0.10698343439469227
VEALLQQSQ	9	Unmodified	_VEALLQQSQ_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.27984619140625	2	508.274564	1014.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.52	1	90.611	90.111	91.111	0.090668								0	0	0	0.24522	1	23988	23988		7.9102	0.62092	1		+		51483	15219	29365	29366	63151	63151					0.02788848718000736
VEARLPQPR	9	Unmodified	_VEARLPQPR_					0	0	0			REV__ENST00000524583.5_1_4:190862046-190863069:+|nuORF	REV__ENST00000524583.5_1_4:190862046-190863069:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.829833984375	2	533.311815	1064.60908	0.40376	0.00021533	-0.12769	-6.81E-05	0.27607	0.00014723	533.3117297649459	16.629	0.69218	16.629	16.377	17.069	0					60	23	4	0	0	0	0.33276	1	1364	1364		3.9444	0	1	1107800	+		51484	21942	29366	29367	63152	63152					0.07935656320023554
VEAVVYHHPP	10	Unmodified	_VEAVVYHHPP_					0	0	0		ENST00000273130.8_1_3:32568382-32570003:-|nuORF	ENST00000273130.8_1_3:32568382-32570003:-|nuORF	ENST00000273130.8_1_3:32568382-32570003:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.7607421875	2	574.298373	1146.58219	0.43047	0.00024722	-0.1478	-8.4879E-05	0.28268	0.00016234	574.2985108350902	44.781	0.45879	44.856	44.643	45.101	0.075047					27	16	2	0	0	0	0.31051	1	9993	9993		16.942	1.0951	1	340960			51485	9094	29367	29368	63153	63153					0.014765477088531043
VEAYQQCY	8	Unmodified	_VEAYQQCY_					0	0	0			REV__ENSG00000104412|ENST00000220853|EMC2	REV__ENSG00000104412|ENST00000220853|EMC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2751159667969	2	502.213117	1002.41168	0.35893	0.00018026	-1.7991	-0.00090352	-1.4402	-0.00072327	502.2122553719191	24.415	0.26077	24.342	24.267	24.527	-0.072557					11	8	2	0	0	0	0.34437	1	3726	3726		0.69038	0	1	43453	+		51486	14408	29368	29369	63154	63154					-0.08942731004935922
VECEDDLIFAC	11	Unmodified	_VECEDDLIFAC_					0	0	0		ENST00000519677.1_1_5:78296041-78296494:-|nuORF	ENST00000519677.1_1_5:78296041-78296494:-|nuORF	ENST00000519677.1_1_5:78296041-78296494:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.8751525878906	3	419.510635	1255.51008	-0.11568	-4.8528E-05	1.5886	0.00066645	1.473	0.00061792	419.5116262030997	30.635	0.41627	30.662	30.394	30.81	0.027157					21	14	2	0	0	0	0.33122	1	5590	5590		7.0371	0.41363	1	110890			51487	11462	29369	29370	63155	63155					-0.10745915542042894
VECQELRH	8	Unmodified	_VECQELRH_					0	0	0			REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7645263671875	2	507.245283	1012.47601	0.077704	3.9415E-05	-0.38591	-0.00019575	-0.30821	-0.00015634	507.24504891348613	15.385	0.25886	15.275	15.121	15.38	-0.10981					11	8	2	0	0	0	0.34167	1	988	988		11.64	0	1	94769	+		51488	18296	29370	29371	63156	63156					-0.029725311281254108
VECQELRH	8	Unmodified	_VECQELRH_					0	0	0			REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	REV__ENST00000460658.5_1_22:31484094-31491444:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.76422119140625	2	507.245283	1012.47601	0.01127	5.7168E-06	-0.15187	-7.7034E-05	-0.1406	-7.1317E-05	507.24516185395544	15.408	0.23837	15.343	15.186	15.424	-0.064413					10	7	2	0	0	0	0.34167	1	1001	1001		11.64	2.2929	1	115980	+		51489	18296	29370	29371	63157	63157					-0.029725311281254108
VECSSVCVCLV	11	Unmodified	_VECSSVCVCLV_					0	0	0		ENST00000354366.7_1_14:90741326-90741632:-|nuORF	ENST00000354366.7_1_14:90741326-90741632:-|nuORF	ENST00000354366.7_1_14:90741326-90741632:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7568359375	2	570.75852	1139.50249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.286	1	74.339	73.839	74.839	0.052361								0	0	0	0.32811	1	19021	19021		13.042	2.9685	1				51490	9594	29371	29372	63158	63158					-0.06168346343315534
VEDARRFRKL	10	Unmodified	_VEDARRFRKL_					0	0	0			REV__EZH2|p.T386Lfs*44|1|0.06|ENSG00000106462|chr7:148817946-148817947|-/ATAAAGACCAGAGTTATCTCAAGAATGTGTAG|frameshift_variant	REV__EZH2|p.T386Lfs*44|1|0.06|ENSG00000106462|chr7:148817946-148817947|-/ATAAAGACCAGAGTTATCTCAAGAATGTGTAG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.90045166015625	3	430.586077	1288.7364	-0.4539	-0.00019544	-1.1112	-0.00047846	-1.5651	-0.0006739	430.5856477762809	28.052	0.50202	28.053	27.82	28.322	0.00046921					40	17	3	0	0	0	0.3179	1	4814	4814		5.7834	5.7834	1	159870	+		51491	22682	29372	29373	63159	63159					0.10358377194211243
VEDARRFRKL	10	Unmodified	_VEDARRFRKL_					0	0	0			REV__EZH2|p.T386Lfs*44|1|0.06|ENSG00000106462|chr7:148817946-148817947|-/ATAAAGACCAGAGTTATCTCAAGAATGTGTAG|frameshift_variant	REV__EZH2|p.T386Lfs*44|1|0.06|ENSG00000106462|chr7:148817946-148817947|-/ATAAAGACCAGAGTTATCTCAAGAATGTGTAG|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	430.586077	1288.7364	-0.35193	-0.00015154	-1.1779	-0.0005072	-1.5299	-0.00065874	430.58555875916295	28.043	0.45427	28.039	27.851	28.306	-0.0042572	-0.039763	-4.4885E-05	NaN	5.7834	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162910	+		51492	22682	29372	29373							0.10358377194211243
VEDFRRTV	8	Unmodified	_VEDFRRTV_					0	0	0		CON__Q32PJ2	CON__Q32PJ2	CON__Q32PJ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2755432128906	2	511.274898	1020.53524	0.38737	0.00019805	0.094979	4.856E-05	0.48235	0.00024661	511.2747800424002	20.49	0.92864	20.49	20.18	21.108	0					122	32	5	0	0	0	0.44569	1	2681	2681		7.2892	0	1	1126500		+	51493	230	29373	29374	63160	63160					0.0257968815770937
VEDLKARY	8	Unmodified	_VEDLKARY_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.27337646484375	2	497.271824	992.529095	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.853	1	89.944	89.444	90.444	0.090569								0	0	0	0.37183	1	23787	23787		4.756	0	1				51494	7873	29374	29375	63161	63161					0.032531699261767244
VEDNEKDLV	9	Unmodified	_VEDNEKDLV_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000159352|P55036-2|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7621459960938	2	530.761486	1059.50842	0.6064	0.00032186	0.39495	0.00020963	1.0014	0.00053148	530.7617067092917	89.177	1.326	89.177	88.487	89.813	0					160	70	4	0	0	0	0.2719	1	23530	23530		13.042	1.4022	1	1001800			51495	5402	29375	29376	63162	63162					-0.01895465244137995
VEDNEKDLV	9	Unmodified	_VEDNEKDLV_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000159352|P55036-2|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7619018554688	2	530.761486	1059.50842	0.45983	0.00024406	0.5356	0.00028428	0.99543	0.00052834	530.7617943009262	89.029	0.94514	89.119	88.809	89.754	0.090561					109	52	3	0	0	0	0.11397	1	23527	23527		49.933	8.0934	1	858520			51496	5402	29375	29376	63163	63163					-0.01895465244137995
VEDNEKDLV	9	Unmodified	_VEDNEKDLV_					0	0	0		ENSG00000159352|ENST00000368884|PSMD4;nc|ENSG00000159352|P55036-2|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	ENSG00000159352|ENST00000368884|PSMD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7619018554688	2	530.761486	1059.50842	0.57498	0.00030518	0.43187	0.00022922	1.0069	0.0005344	530.7617694196376	89.16	1.297	89.159	88.478	89.775	-0.00080872					158	60	4	0	0	0	0.11397	1	23561	23561		49.933	8.0934	1	1018000			51497	5402	29375	29376	63164	63164					-0.01895465244137995
VEEKPIGAKEI	11	Unmodified	_VEEKPIGAKEI_					0	0	0			REV__ENST00000524833.5_1_11:107992333-108005114:+|nuORF	REV__ENST00000524833.5_1_11:107992333-108005114:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2243957519531	3	404.899328	1211.67615	-0.12876	-5.2135E-05	2.3935	0.00096914	2.2648	0.00091701	404.900593521765	17.524	0.34183	17.524	17.318	17.66	0					16	11	2	0	0	0	0.32996	1	1642	1642		4.1166	2.3744	1	13861	+		51498	13803	29376	29377	63165	63165					0.07878222020485737
VEEQEKVKEAL	11	Unmodified	_VEEQEKVKEAL_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.78009033203125	3	434.569759	1300.68745	-0.10618	-4.6144E-05	3.804	0.0016531	3.6978	0.001607	434.5719467126458	28.688	0.68191	28.683	28.411	29.093	-0.0042572					54	23	3	0	0	0	0.3299	1	5023	5023		9.7643	3.5299	1	414460			51499	5124	29377	29378	63166	63166					0.04912999323960321
VEEYLRDVVCQ	11	Unmodified	_VEEYLRDVVCQ_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2542419433594	3	451.555344	1351.6442	-0.12249	-5.531E-05	-0.03628	-1.6382E-05	-0.15877	-7.1692E-05	451.5554104318014	14.402	0.37046	14.402	14.221	14.591	0					18	12	2	0	0	0	0.33169	1	690	690		3.8459	0	1	25105			51500	4931	29378	29379	63167	63167					-0.01755513724992852
VEEYLRDVVCQ	11	Unmodified	_VEEYLRDVVCQ_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2542724609375	3	451.555344	1351.6442	-0.11492	-5.1893E-05	-0.4415	-0.00019936	-0.55642	-0.00025125	451.55525654693065	14.582	0.23262	14.478	14.308	14.54	-0.10466					12	7	2	0	0	0	0.33236	1	726	726		1.1098	0	1	23632			51501	4931	29378	29379	63168	63168					-0.01755513724992852
VEEYLRDVVCQ	11	Unmodified	_VEEYLRDVVCQ_					0	0	0		nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ITPR1|p.Y1487Sfs*6|1|0.36|ENSG00000150995|chr3:4699863-4699866|GTAT/-|frameshift_variant	nc|ENSG00000150995|Q14643-4|ITPR1	nc|ENSG00000150995|Q14643-4|ITPR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.25372314453125	3	451.555344	1351.6442	-0.12761	-5.7623E-05	-0.20478	-9.2468E-05	-0.33239	-0.00015009	451.55542506283433	14.526	0.29556	14.46	14.32	14.616	-0.066068					14	10	2	0	0	0	0.33303	1	764	764		1.1098	0	1	28543			51502	4931	29378	29379	63169	63169					-0.01755513724992852
VEFKKSFTDD	10	Unmodified	_VEFKKSFTDD_					0	0	0			REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1	REV__nc|ENSG00000065882|Q86TI0-2|TBC1D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.2806396484375	2	608.298236	1214.58192	0.48006	0.00029202	0.34198	0.00020803	0.82204	0.00050005	608.2985394163898	52.422	0.76183	52.472	52.06	52.822	0.050571					40	27	2	0	0	0	0.35231	1	12407	12407		12.241	0.60036	1	360570	+		51503	13671	29379	29380	63170	63170					-0.01678916801665764
VEFNCSESFTM	11	Unmodified	_VEFNCSESFTM_					0	0	0		ENSG00000000971|ENST00000367429|CFH;nc|ENSG00000000971|P08603|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENSG00000000971|ENST00000367429|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.2377014160156	3	431.842385	1292.50532	0.10746	4.6404E-05	-1.6686	-0.00072058	-1.5612	-0.00067418	431.84169660549395	29.435	0.41534	29.435	29.244	29.659	0					21	14	2	0	0	0	0.33334	1	5207	5207		0.40827	0	1	49555			51504	286;10810	29380	29381	63171	63171					-0.129227996848158
VEFSLCLLF	9	Unmodified	_VEFSLCLLF_					0	0	0		nc|ENSG00000134955|Q8TED4-3|SLC37A2;ENST00000526405.5_1_11:124933263-124955028:+|nuORF;ENSG00000134955|ENST00000403796|SLC37A2;nc|ENSG00000134955|Q8TED4-2|SLC37A2	nc|ENSG00000134955|Q8TED4-3|SLC37A2	nc|ENSG00000134955|Q8TED4-3|SLC37A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7731323242188	2	535.783179	1069.5518	0.4758	0.00025493	-2.8641	-0.0015345	-2.3883	-0.0012796	535.7824166652891	80.145	0.89793	80.118	79.806	80.704	-0.026825					58	31	3	0	0	0	0.24581	1	20782	20782		16.942	1.0951	1	281180			51505	3832	29381	29382	63172	63172					0.019810529994401804
VEFYSRRIF	9	Unmodified	_VEFYSRRIF_					0	0	0			REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.9154052734375	3	406.220624	1215.64004	-0.88444	-0.00035928	1.3391	0.00054398	0.45468	0.0001847	406.2214937878977	34.483	0.39031	34.483	34.306	34.697	0					21	13	2	0	0	0	0.25431	1	6759	6759		5.7319	1.8555	1	105560	+		51506	13393	29382	29383	63173	63173					0.04084809634264275
VEGIRLLL	8	Unmodified	_VEGIRLLL_					0	0	0			REV__ENST00000520794.1_1_5:179290450-179293075:-|nuORF	REV__ENST00000520794.1_1_5:179290450-179293075:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2769470214844	2	456.797478	911.580402	0.19412	8.8675E-05	-0.45611	-0.00020835	-0.26198	-0.00011967	456.7974215209936	58.487	0.41924	58.578	58.257	58.677	0.091301					19	14	2	0	0	0	0.28969	1	14124	14124		28.487	0	1	162390	+		51507	18720	29383	29384	63174	63174					0.1210753869090695
VEGYKRCMDK	10	Unmodified	_VEGYKRCMDK_					0	0	0			REV__ENSG00000099381|ENST00000262519|SETD1A	REV__ENSG00000099381|ENST00000262519|SETD1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.5329284667969	3	410.198614	1227.57401	-0.089855	-3.6858E-05	-1.1758	-0.00048231	-1.2656	-0.00051916	410.1980506440369	16.06	0.44774	15.945	15.718	16.166	-0.11434					31	14	3	0	0	0	0.39227	1	1222	1222		2.6312	0	1	57964	+		51508	14134	29384	29385	63175	63175					-0.030670905944361948
VEHFVHQI	8	Unmodified	_VEHFVHQI_					0	0	0		ENSG00000115602|ENST00000233954|IL1RL1	ENSG00000115602|ENST00000233954|IL1RL1	ENSG00000115602|ENST00000233954|IL1RL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7648010253906	2	504.766709	1007.51886	0.19429	9.8072E-05	-2.8657	-0.0014465	-2.6714	-0.0013484	504.7655106101872	22.249	0.8495	22.249	21.996	22.845	0					40	29	2	0	0	0	0.3671	1	3099	3099		23.148	1.6114	1	138630			51509	2663	29385	29386	63176	63176					0.015406069916139131
VEHILCTKP	9	Unmodified	_VEHILCTKP_					0	0	0		ENST00000574867.5_1_17:5292093-5322970:-|nuORF;NUP88|p.E694Vfs*31|1|0.04|ENSG00000108559|chr17:5386789-5386790|-/AGTA|frameshift_variant;ENSG00000108559|ENST00000573584|NUP88	ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENST00000574867.5_1_17:5292093-5322970:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2680053710938	2	520.283877	1038.5532	0.36494	0.00018987	-1.3221	-0.00068788	-0.95719	-0.00049801	520.786020519097	32.981	0.20004	32.981	32.865	33.065	0					9	6	2	0	0	0	0.25526	1	6366	6366		7.9102	0	1	67641			51510	2194	29386	29387	63177	63177					0.03546687088191902
VEHYKKAPIF	10	Unmodified	_VEHYKKAPIF_					0	0	0		ENSG00000158092|ENST00000481752|NCK1;nc|ENSG00000158092|P16333-2|NCK1;ENSG00000071051|ENST00000233154|NCK2	ENSG00000158092|ENST00000481752|NCK1;ENSG00000071051|ENST00000233154|NCK2	ENSG00000158092|ENST00000481752|NCK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2172546386719	3	411.232641	1230.67609	0.086135	3.5421E-05	0.085652	3.5223E-05	0.17179	7.0644E-05	411.2326523041901	46.751	0.84421	46.751	46.458	47.302	0					67	29	3	0	0	0	0.31039	1	10624	10624		11.518	3.0736	1	2700400			51511	5339;948	29387	29388	63178	63178					0.06998266811115172
VEIITYRR	8	Unmodified	_VEIITYRR_					0	0	0		CON__Q61726	CON__Q61726	CON__Q61726	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.31005859375	2	525.308741	1048.60293	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.579	1	98.579	98.079	99.079	0								0	0	0	0.37183	1	26379	26379		4.756	0.81161	1			+	51512	237	29388	29389	63179	63179					0.08057138088497595
VEISYIQVKEE	11	Unmodified	_VEISYIQVKEE_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.757568359375	3	446.238009	1335.6922	0.32801	0.00014637	1.8462	0.00082383	2.1742	0.0009702	446.23914024307186	37.37	0.94225	37.463	37.06	38.002	0.093018					87	34	4	0	0	0	0.33169	1	7750	7750		3.8459	0.52627	1	662560	+		51513	18610	29389	29390	63180	63180					0.037778834667278716
VEISYIQVKEE	11	Unmodified	_VEISYIQVKEE_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	446.238009	1335.6922	0.62221	0.00027766	1.4902	0.00066497	2.1124	0.00094263	446.2389919921929	37.496	0.94168	37.496	37.093	38.034	0	0.007008	-0.00054201	NaN	3.8459	82	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	779740	+		51514	18610	29389	29390							0.037778834667278716
VEISYIQVKEE	11	Unmodified	_VEISYIQVKEE_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	446.238009	1335.6922	0.23317	0.00010405	2.1335	0.00095206	2.3667	0.0010561	446.23910803502673	37.42	1.0358	37.508	37.032	38.068	0.08741	0.018843	0.00031924	NaN	3.8459	91	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	749840	+		51515	18610	29389	29390							0.037778834667278716
VEKAVSSAAGP	11	Unmodified	_VEKAVSSAAGP_					0	0	0		ENSG00000105278|ENST00000262961|ZFR2	ENSG00000105278|ENST00000262961|ZFR2	ENSG00000105278|ENST00000262961|ZFR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2751159667969	2	508.274564	1014.53457	0.58853	0.00029913	0.039995	2.0328E-05	0.62852	0.00031946	508.27449909568463	20.239	0.59216	20.186	19.933	20.525	-0.05291					36	21	2	0	0	0	0.29518	1	2513	2513		22.658	0	1	159900			51516	1961	29390	29391	63181	63181					0.02788848718000736
VEKDCWEE	8	Unmodified	_VEKDCWEE_					0	0	0		ENSG00000099910|ENST00000328879|KLHL22;nc|ENSG00000099910|Q53GT1-3|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	ENSG00000099910|ENST00000328879|KLHL22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.287109375	2	519.215857	1036.41716	0.37513	0.00019477	1.6256	0.00084403	2.0007	0.0010388	519.2165413482785	64.765	0.47129	64.755	64.552	65.024	-0.0095291					25	16	2	0	0	0	0.34247	1	16060	16060		8.5933	0	1	190560			51517	1504	29391	29392	63182	63182					-0.09959052213116593
VEKDPELGF	9	Unmodified	_VEKDPELGF_					0	0	0		ENST00000505822.1_1_5:65370974-65372269:+|nuORF;nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN	ENST00000505822.1_1_5:65370974-65372269:+|nuORF	ENST00000505822.1_1_5:65370974-65372269:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3182983398438	2	517.263665	1032.51278	0.37726	0.00019514	-0.93648	-0.00048441	-0.55922	-0.00028926	517.2643880206333	73.04	0.82566	73.04	72.726	73.551	0					49	29	2	0	0	0	0.25417	1	18592	18592		4.756	0	1	61923			51518	2463	29392	29393	63183	63183					-0.00217956030564892
VEKEKAKIL	9	Unmodified	_VEKEKAKIL_					0	0	0			REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.300537109375	2	529.334424	1056.6543	0.43461	0.00023005	-0.21572	-0.00011419	0.21888	0.00011586	529.334161538199	52.225	0.40488	52.275	52.06	52.465	0.050575					24	14	2	0	0	0	0.24993	1	12204	12204		8.7454	0	1	302400	+		51519	15495	29393	29394	63184	63184					0.12823462062578983
VEKERDFRKI	10	Unmodified	_VEKERDFRKI_					0	0	0		nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;ENST00000399586.2_1_X:74960734-74966719:-|nuORF;ENSG00000182670|ENST00000418766|TTC3	nc|ENSG00000182670|P53804-3|TTC3	nc|ENSG00000182670|P53804-3|TTC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.54620361328125	3	440.585854	1318.73573	0.035077	1.5454E-05	-0.34391	-0.00015152	-0.30884	-0.00013607	440.5856217690202	26.673	0.54694	26.673	26.35	26.897	0					40	18	3	0	0	0	0.3179	1	4456	4456		8.9762	0.53194	1	117360			51520	7309	29394	29395	63185	63185					0.089115377545113
VEKHDKGV	8	Unmodified	_VEKHDKGV_					0	0	0			REV__ENSG00000138315|ENST00000334011|OIT3	REV__ENSG00000138315|ENST00000334011|OIT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2649841308594	2	456.250892	910.48723	-0.78644	-0.00035881	0.18651	8.5095E-05	-0.59993	-0.00027372	456.2509209143431	34.811	0.51988	34.889	34.675	35.195	0.077377					30	18	2	0	0	0	0.43302	1	6858	6858		11.64	0	1	357620	+		51521	15917	29395	29396	63186	63186					0.02840614237675254
VEKIDISPVL	10	Unmodified	_VEKIDISPVL_					0	0	0		nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11	nc|ENSG00000020922|P49959-2|MRE11	nc|ENSG00000020922|P49959-2|MRE11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.818359375	2	556.831714	1111.64888	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.774	1	46.826	46.326	47.326	0.052574								0	0	0	0.34454	1	10566	10566		17.113	2.2746	1				51522	506	29396	29397	63187	63187					0.09751738480099448
VEKILAEVLPQ	11	Unmodified	_VEKILAEVLPQ_					0	0	0		nc|ENSG00000006534|P43353-2|ALDH3B1;ENSG00000006534|ENST00000342456|ALDH3B1	nc|ENSG00000006534|P43353-2|ALDH3B1	nc|ENSG00000006534|P43353-2|ALDH3B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.886962890625	2	619.871371	1237.72819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.84	1	102.85	102.35	103.35	0.016685								0	0	0	0.35514	1	27345	27345		7.1017	2.2047	1				51523	360	29397	29398	63188	63188					0.11883385434225602
VEKILAEVLPQ	11	Unmodified	_VEKILAEVLPQ_					0	0	0		nc|ENSG00000006534|P43353-2|ALDH3B1;ENSG00000006534|ENST00000342456|ALDH3B1	nc|ENSG00000006534|P43353-2|ALDH3B1	nc|ENSG00000006534|P43353-2|ALDH3B1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.86962890625	2	619.871371	1237.72819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.66	1	116.68	116.18	117.18	0.020988								0	0	0	0.37609	1	30264	30264		2.4985	1.0166	1				51524	360	29397	29398	63189	63189					0.11883385434225602
VEKKILINISP	11	Unmodified	_VEKKILINISP_					0	0	0			REV__Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|109|3|sense	REV__Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|109|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.3809204101562	2	627.395013	1252.77547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.33	1	103.33	102.83	103.83	0								0	0	0	0.37382	1	27458	27458		2.9952	0	1		+		51525	22731	29398	29399	63190	63190					0.15919664705234027
VEKKKLGT	8	Unmodified	_VEKKKLGT_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7872619628906	2	451.78711	901.559667	-0.11785	-5.3244E-05	0.41944	0.0001895	0.30159	0.00013626	451.7872530008694	14.769	0.3019	14.769	14.623	14.925	0					23	10	3	0	0	0	0.46022	1	851	851		2.3027	0	1	113010			51526	5124	29399	29400	63191	63191					0.10494948311247754
VEKLFSPH	8	Unmodified	_VEKLFSPH_					0	0	0			REV__ENSG00000121741|ENST00000610343|ZMYM2	REV__ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.75323486328125	2	478.763635	955.512717	0.20608	9.8661E-05	0.34957	0.00016736	0.55565	0.00026602	478.76364641802235	58.805	0.81598	58.805	58.564	59.38	0					61	28	3	0	0	0	0.37937	1	14344	14344		21.747	0	1	1073300	+		51527	15129	29400	29401	63192	63192					0.03318088760090632
VEKNEYSSR	9	Unmodified	_VEKNEYSSR_					0	0	0			REV__nc|ENSG00000177354|Q711Q0-3|CEFIP	REV__nc|ENSG00000177354|Q711Q0-3|CEFIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.8179931640625	2	556.272552	1110.53055	0.67884	0.00037762	2.881	0.0016026	3.5598	0.0019802	556.7757549870339	46.883	0.65126	46.937	46.709	47.36	0.054371					32	22	2	0	0	0	0.21389	1	10566	10566		25.399	0.40835	1	358410	+		51528	17984	29401	29402	63193	63193					-0.020292407757096953
VEKNLEETKRL	11	Unmodified	_VEKNLEETKRL_					0	0	0			REV__CON__Q9Z2K1	REV__CON__Q9Z2K1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.25799560546875	3	453.592786	1357.75653	0.033021	1.4978E-05	-1.0232	-0.0004641	-0.99014	-0.00044912	453.592304344946	26.333	0.5036	26.294	25.985	26.489	-0.038671					29	17	2	0	0	0	0.33334	1	4357	4357		1.2148	0	1	72210	+	+	51529	13270	29402	29403	63194	63194					0.09196083343499595
VEKREPITP	9	Unmodified	_VEKREPITP_					0	0	0			REV__nc|ENSG00000105176|O94763-3|URI1	REV__nc|ENSG00000105176|O94763-3|URI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7719116210938	2	534.806031	1067.59751	0.38068	0.00020359	-1.6466	-0.00088062	-1.2659	-0.00067703	534.8059508992031	43.668	0.89695	43.746	43.05	43.947	0.077515					54	32	3	0	0	0	0.1939	1	9623	9623		13.042	2.9685	1	388670	+		51530	22927	29403	29404	63195	63195					0.06641414506043475
VEKTQPGYPD	10	Unmodified	_VEKTQPGYPD_					0	0	0			REV__nc|ENSG00000186416|O15226|NKRF	REV__nc|ENSG00000186416|O15226|NKRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2615966796875	2	567.277303	1132.54005	-0.11953	-6.7808E-05	-0.15022	-8.5219E-05	-0.26976	-0.00015303	567.2768989768273	98.747	0.56101	98.747	98.343	98.904	0					83	64	2	0	0	0	0.31691	1	26348	26348		9.3831	2.0939	1	416840	+		51531	18446	29404	29405	63196	63196					-0.020914724902013404
VEKTQPGYPD	10	Unmodified	_VEKTQPGYPD_					0	0	0			REV__nc|ENSG00000186416|O15226|NKRF	REV__nc|ENSG00000186416|O15226|NKRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2614135742188	2	567.277303	1132.54005	0.22169	0.00012576	-0.51457	-0.0002919	-0.29288	-0.00016614	567.2766520623484	98.796	0.48288	98.789	98.484	98.967	-0.006897					84	55	2	0	0	0	0.31691	1	26425	26425		9.3831	0	1	570830	+		51532	18446	29404	29405	63197	63197					-0.020914724902013404
VELILIQVFHL	11	Unmodified	_VELILIQVFHL_					0	0	0			REV__nc|ENSG00000274150|A8MWK0|FADS2B	REV__nc|ENSG00000274150|A8MWK0|FADS2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.93975830078125	3	441.939346	1322.79621	0.30257	0.00013372	0.28311	0.00012512	0.58568	0.00025884	441.9395402285558	49.404	1.1797	49.404	48.773	49.953	0					142	42	5	0	0	0	0.46554	1	11392	11392		2.6312	0.37851	1	806890	+		51533	23234	29405	29406	63198	63198					0.14772255084903918
VELILIQVFHL	11	Unmodified	_VELILIQVFHL_					0	0	0			REV__nc|ENSG00000274150|A8MWK0|FADS2B	REV__nc|ENSG00000274150|A8MWK0|FADS2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.9396057128906	3	441.939346	1322.79621	0.099137	4.3812E-05	0.58971	0.00026062	0.68885	0.00030443	441.93969129806726	49.453	1.0459	49.498	48.935	49.981	0.044891					115	38	4	0	0	0	0.46554	2	11363	11363;11417		2.6312	0.19645	1	901720	+		51534	23234	29405	29406	63199;63200	63199					0.14772255084903918
VELKKTKG	8	Unmodified	_VELKKTKG_					0	0	0			REV__nc|ENSG00000211693|A0A075B6L2|TRGV11	REV__nc|ENSG00000211693|A0A075B6L2|TRGV11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.73809814453125	2	451.78711	901.559667	-0.019343	-8.7388E-06	-0.087247	-3.9417E-05	-0.10659	-4.8156E-05	451.7869863609502	17.615	0.48903	17.497	17.323	17.812	-0.11739					30	16	3	0	0	0	0.34434	1	1633	1633		0.79363	0	1	82493	+		51535	23178	29406	29407	63201	63201					0.10494948311225016
VELKKTKG	8	Unmodified	_VELKKTKG_					0	0	0			REV__nc|ENSG00000211693|A0A075B6L2|TRGV11	REV__nc|ENSG00000211693|A0A075B6L2|TRGV11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	451.78711	901.559667	0.13863	6.2633E-05	-0.54518	-0.00024631	-0.40655	-0.00018367	451.7868240669922	17.514	0.50603	17.514	17.296	17.802	0	-0.016677	-0.00014478	NaN	0.79363	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79388	+		51536	23178	29406	29407							0.10494948311225016
VELKKTKG	8	Unmodified	_VELKKTKG_					0	0	0			REV__nc|ENSG00000211693|A0A075B6L2|TRGV11	REV__nc|ENSG00000211693|A0A075B6L2|TRGV11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	451.78711	901.559667	0.11463	5.179E-05	-0.42738	-0.00019308	-0.31274	-0.00014129	451.78683706907475	17.641	0.54066	17.58	17.384	17.925	-0.060429	0.049793	-3.8337E-05	NaN	0.79363	28	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77672	+		51537	23178	29406	29407							0.10494948311225016
VELLKQVR	8	Unmodified	_VELLKQVR_					0	0	0		ENSG00000187715|ENST00000405109|KBTBD12	ENSG00000187715|ENST00000405109|KBTBD12	ENSG00000187715|ENST00000405109|KBTBD12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.2391052246094	2	492.813659	983.612765	0.43201	0.0002129	-1.2012	-0.00059196	-0.76918	-0.00037906	492.8128844779388	30.017	0.22989	30.029	29.886	30.116	0.012266					10	7	2	0	0	0	0.34353	1	5456	5456		4.756	0	1	37113			51538	7702	29407	29408	63202	63202					0.12030326093895383
VELQRIHRAP	10	Unmodified	_VELQRIHRAP_					0	0	0		ENST00000576406.5_1_17:1665378-1673212:+|nuORF	ENST00000576406.5_1_17:1665378-1673212:+|nuORF	ENST00000576406.5_1_17:1665378-1673212:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5644836425781	3	406.907039	1217.69929	0.099635	4.0542E-05	-0.43216	-0.00017585	-0.33253	-0.00013531	406.9067057570131	35.982	0.4879	36.064	35.874	36.362	0.082359					42	17	4	0	0	0	0.38745	1	7287	7287		5.7834	0.48655	1	499760			51539	12050	29408	29409	63203	63203					0.09914705648452582
VELRRQVP	8	Unmodified	_VELRRQVP_					0	0	0			REV__nc|ENSG00000177354|Q711Q0-3|CEFIP	REV__nc|ENSG00000177354|Q711Q0-3|CEFIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.8033752441406	2	498.801083	995.587613	0.32316	0.00016119	-0.25173	-0.00012556	0.071426	3.5627E-05	498.80116062076354	24.097	1.6602	24.058	23.651	25.312	-0.038927					145	57	3	0	0	0	0.3671	1	3589	3589		23.148	1.4018	1	5275900	+		51540	17984	29409	29410	63204	63204					0.08964271291324621
VELVPGVMTF	10	Unmodified	_VELVPGVMTF_					0	0	0			REV__ENST00000376736.5_1_9:79007377-79007449:-|nuORF	REV__ENST00000376736.5_1_9:79007377-79007449:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.80615234375	2	546.293911	1090.57327	0.71496	0.00039058	1.8111	0.00098937	2.526	0.0013799	546.7981231406794	65.766	0.32582	65.766	65.545	65.871	0					16	11	2	0	0	0	0.31358	1	16376	16376		9.3831	0	1	258480	+		51541	20493	29410	29411	63205	63205					0.031604380281578415
VEMDSSSF	8	Unmodified	_VEMDSSSF_					0	0	0		ENSG00000177125|ENST00000319119|ZBTB34	ENSG00000177125|ENST00000319119|ZBTB34	ENSG00000177125|ENST00000319119|ZBTB34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.76434326171875	2	451.184026	900.353498	0.40515	0.0001828	0.41571	0.00018756	0.82085	0.00037035	451.1842054123088	66.261	0.52441	66.261	65.899	66.423	0					28	18	2	0	0	0	0.34046	1	16516	16516		5.2307	0	1	179030			51542	6964	29411	29412	63206	63206					-0.10066412650201073
VEMDSSSF	8	Unmodified	_VEMDSSSF_					0	0	0		ENSG00000177125|ENST00000319119|ZBTB34	ENSG00000177125|ENST00000319119|ZBTB34	ENSG00000177125|ENST00000319119|ZBTB34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7646179199219	2	451.184026	900.353498	0.26581	0.00011993	0.43988	0.00019847	0.70569	0.0003184	451.18417694838774	66.128	0.60895	66.115	65.824	66.433	-0.013596					26	21	2	0	0	0	0.34046	1	16462	16462		14.582	5.2343	1	223910			51543	6964	29411	29412	63207	63207					-0.10066412650201073
VEMIKLHKQL	10	Unmodified	_VEMIKLHKQL_					0	0	0		RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L	RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant	RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8697509765625	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.495	1	99.495	98.995	99.995	0								0	0	0	0.37664	1	26615	26615		3.5965	0.60125	1				51544	1839	29412	29413	63208	63208					0.11231169001871422
VEMIKLHKQL	10	Unmodified	_VEMIKLHKQL_					0	0	0		RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L	RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant	RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8692016601562	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.507	1	99.507	99.007	100.01	0								0	0	0	0.37044	1	26619	26619		6.2058	2.2614	1				51545	1839	29412	29413	63209	63209					0.11231169001871422
VEMIKLHKQL	10	Unmodified	_VEMIKLHKQL_					0	0	0		RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L	RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant	RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8682250976562	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.01	1	102.01	101.51	102.51	0								0	0	0	0.37664	1	27177	27177		3.5965	0	1				51546	1839	29412	29413	63210	63210					0.11231169001871422
VEMIKLHKQL	10	Unmodified	_VEMIKLHKQL_					0	0	0		RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L	RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant	RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8694458007812	2	619.868108	1237.72166	-0.10282	-6.3733E-05	2.7355	0.0016956	2.6326	0.0016319	619.8695002051464	100.62	0.13066	100.66	100.6	100.73	0.039001					23	17	2	0	0	0	0.40106	1	26887	26887		3.2813	0.78282	1	121160			51547	1839	29412	29413	63211	63211					0.11231169001871422
VEMIKLHKQL	10	Unmodified	_VEMIKLHKQL_					0	0	0		RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L	RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant	RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.868408203125	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.952	1	96.946	96.446	97.446	-0.0055466								0	0	0	0.37807	1	25940	25940		2.9952	0.26005	1				51548	1839	29412	29413	63212	63212					0.11231169001871422
VEMIKLHKQL	10	Unmodified	_VEMIKLHKQL_					0	0	0		RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant;nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L	RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant	RPGRIP1L|p.V276A|1|0.23|ENSG00000103494|chr16:53675072-53675072|A/G|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8692016601562	2	619.868108	1237.72166	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.46	1	100.45	99.952	100.95	-0.006897								0	0	0	0.37664	1	26875	26875		3.5965	0.60125	1				51549	1839	29412	29413	63213	63213					0.11231169001871422
VENIQFSCFEE	11	Unmodified	_VENIQFSCFEE_					0	0	0			REV__ENSG00000170367|ENST00000304710|CST5	REV__ENSG00000170367|ENST00000304710|CST5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.8641662597656	3	448.864066	1343.57037	-0.01822	-8.1784E-06	0.50162	0.00022516	0.4834	0.00021698	448.86430965173065	22.89	0.71688	22.89	22.533	23.25	0					69	24	5	0	0	0	0.47786	1	3284	3284		1.0136	0.31591	1	184950	+		51550	17575	29413	29414	63214	63214					-0.08767481887298345
VENQVYCPF	9	Unmodified	_VENQVYCPF_					0	0	0			REV__ENSG00000147324|ENST00000276282|MFHAS1	REV__ENSG00000147324|ENST00000276282|MFHAS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7628784179688	2	549.749867	1097.48518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.157	1	81.157	80.657	81.657	0								0	0	0	0.23091	1	21127	21127		12.532	1.7076	1		+		51551	16383	29414	29415	63215	63215					-0.059661825624516496
VENQYQLL	8	Unmodified	_VENQYQLL_					0	0	0		ENSG00000166130|ENST00000299157|IKBIP;nc|ENSG00000166130|Q70UQ0|IKBIP	ENSG00000166130|ENST00000299157|IKBIP	ENSG00000166130|ENST00000299157|IKBIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.263671875	2	503.763832	1005.51311	0.35398	0.00017832	0.50168	0.00025273	0.85566	0.00043105	503.7640069579966	64.853	0.94589	64.853	64.513	65.458	0					68	34	3	0	0	0	0.32435	1	16260	16260		23.148	0	1	1976700			51552	6030	29415	29416	63216	63216					0.010574636892783928
VEPATYPRA	9	Unmodified	_VEPATYPRA_					0	0	0			REV__nc|ENSG00000155754|Q53TS8-1|C2CD6	REV__nc|ENSG00000155754|Q53TS8-1|C2CD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.7980651855469	2	502.263999	1002.51345	-0.24612	-0.00012362	-1.9714	-0.00099014	-2.2175	-0.0011138	502.26499873750066	34.534	0.41702	34.611	34.363	34.78	0.077377					31	14	3	0	0	0	0.25323	1	6775	6775		10.074	3.3508	1	141980	+		51553	16710	29416	29417	63217	63217					0.012288834091236822
VEPEKKISVPI	11	Unmodified	_VEPEKKISVPI_					0	0	0			REV__ENSG00000065613|ENST00000369755|SLK	REV__ENSG00000065613|ENST00000369755|SLK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8690185546875	2	619.871371	1237.72819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.19	1	100.18	99.679	100.68	-0.006897								0	0	0	0.36685	1	26811	26811		4.5289	0.93237	1		+		51554	13668	29417	29418	63218	63218					0.11883385434225602
VEPEKTLAF	9	Unmodified	_VEPEKTLAF_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.8023071289062	2	517.281857	1032.54916	0.34164	0.00017672	-0.49979	-0.00025853	-0.15816	-8.1811E-05	517.7811126035875	88.501	0.50195	88.498	88.426	88.928	-0.0028458					28	21	2	0	0	0	0.2322	1	23377	23377		20.454	5.6154	1	65495			51555	6689	29418	29419	63219	63219					0.03418920866147346
VEPGVIVL	8	Unmodified	_VEPGVIVL_					0	0	0			REV__ENST00000413816.6_3_12:129383828-129431963:+|nuORF	REV__ENST00000413816.6_3_12:129383828-129431963:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2575378417969	2	413.257654	824.500755	-0.035438	-1.4645E-05	0.074614	3.0835E-05	0.039176	1.619E-05	413.2575869817443	66.845	1.1875	66.845	66.545	67.732	0					116	41	4	0	0	0	0.065483	2	16804	16718;16804		70.865	0	1	4634100	+		51556	16563	29419	29420	63220;63221	63221					0.08148472016898722
VEPHLCLIF	9	Unmodified	_VEPHLCLIF_					0	0	0			REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF	REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.8180541992188	2	535.788795	1069.56304	0.6134	0.00032865	-2.9551	-0.0015833	-2.3417	-0.0012547	535.7871836356031	88.774	0.56761	88.774	88.563	89.131	0					39	24	2	0	0	0	0.25417	1	23549	23549		8.5933	0	1	82848	+		51557	21342	29420	29421	63222	63222					0.031038750935749704
VEPMNMDDIF	10	Unmodified	_VEPMNMDDIF_					0	0	0			REV__ENSG00000007174|ENST00000262442|DNAH9;REV__ENSG00000105877|ENST00000409508|DNAH11;REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.75927734375	2	605.759575	1209.5046	0.84079	0.00050932	-0.59359	-0.00035957	0.24721	0.00014975	605.7593235170829	74.725	0.78056	74.725	74.481	75.262	0					54	27	3	0	0	0	0.35267	1	19151	19151		9.3831	0	1	1291600	+		51558	18519;13381;14493	29421	29422	63223	63223					-0.0917759433386891
VEPMNMDDIF	10	Unmodified	_VEPMNMDDIF_					0	0	0			REV__ENSG00000007174|ENST00000262442|DNAH9;REV__ENSG00000105877|ENST00000409508|DNAH11;REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3558349609375	2	605.759575	1209.5046	0.84079	0.00050932	-0.59359	-0.00035957	0.24721	0.00014975	605.7593235170829	74.725	0.78056	74.725	74.481	75.262	0					54	27	3	0	0	0	0.3183	1	19278	19278		13.906	7.1829	1	1291600	+		51559	18519;13381;14493	29421	29422	63224	63224					-0.0917759433386891
VEQIWRDIED	10	Unmodified	_VEQIWRDIED_					0	0	0		nc|ENSG00000170703|Q8N841-2|TTLL6;ENST00000376681.7_1_17:46840236-46881289:-|nuORF;nc|ENSG00000170703|Q8N841-3|TTLL6;ENSG00000170703|ENST00000393382|TTLL6	nc|ENSG00000170703|Q8N841-2|TTLL6	nc|ENSG00000170703|Q8N841-2|TTLL6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8821716308594	3	434.882337	1301.62518	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.64	1	111.65	111.15	112.15	0.01152								0	0	0	0.38197	1	29064	29064		0.69767	0.07084	1				51560	6473	29422	29423	63225	63225					-0.01356727024403881
VERALCSVCV	10	Unmodified	_VERALCSVCV_					0	0	0		ENST00000437626.5_1_21:46645735-46645816:+|nuORF	ENST00000437626.5_1_21:46645735-46645816:+|nuORF	ENST00000437626.5_1_21:46645735-46645816:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2904052734375	2	539.772819	1077.53109	0.47745	0.00025771	-0.018901	-1.0202E-05	0.45855	0.00024751	539.772910659199	52.235	0.40732	52.285	52.009	52.417	0.050575					24	14	2	0	0	0	0.29613	1	12245	12245		23.79	17.436	1	376350			51561	10532	29423	29424	63226	63226					-0.004578606518634842
VERGRGLL	8	Unmodified	_VERGRGLL_					0	0	0		ENST00000587411.5_1_19:5921137-5924855:-|nuORF;ENST00000586344.5_1_19:5917623-5933521:-|nuORF;nc|ENSG00000031823|Q9H6Z4-3|RANBP3;ENST00000592771.5_1_19:5917623-5941693:-|nuORF;nc|ENSG00000031823|Q9H6Z4-2|RANBP3;ENSG00000031823|ENST00000340578|RANBP3	ENST00000587411.5_1_19:5921137-5924855:-|nuORF	ENST00000587411.5_1_19:5921137-5924855:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2698669433594	2	450.274701	898.534849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.518	1	83.595	83.095	84.095	0.077095								0	0	0	0.37724	1	21844	21844		2.3027	0	1				51562	553	29424	29425	63227	63227					0.08152313228526964
VERHVKRR	8	Unmodified	_VERHVKRR_					0	0	0			REV__nc|nan|Q5JPI3-2|C3orf38	REV__nc|nan|Q5JPI3-2|C3orf38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3300170898438	2	540.330873	1078.64719	0.54838	0.00029631	-1.1049	-0.00059699	-0.55648	-0.00030069	540.8317293690573	89.291	0.52621	89.382	89.122	89.648	0.090569					71	31	3	0	0	0	0.45169	1	23565	23565		5.2307	0	1	117650	+		51563	18056	29425	29426	63228	63228					0.1110158702535955
VERHVKRR	8	Unmodified	_VERHVKRR_					0	0	0			REV__nc|nan|Q5JPI3-2|C3orf38	REV__nc|nan|Q5JPI3-2|C3orf38	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3301391601562	2	540.330873	1078.64719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.249	1	89.248	88.748	89.748	-0.00080872								0	0	0	0.37078	1	23596	23596		5.2307	0	1		+		51564	18056	29425	29426	63229	63229					0.1110158702535955
VERIGLTDREL	11	Unmodified	_VERIGLTDREL_					0	0	0			REV__ENST00000587225.1_1_19:1989877-1990887:-|nuORF	REV__ENST00000587225.1_1_19:1989877-1990887:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7803649902344	3	434.245498	1299.71466	0.29312	0.00012728	-4.372	-0.0018985	-4.0789	-0.0017712	434.2420523436069	34.04	0.64053	34.106	33.704	34.344	0.066357					38	22	3	0	0	0	0.3325	1	6665	6665		2.2527	0.79761	1	128720	+		51565	15614	29426	29427	63230	63230					0.07679527654977392
VERKRCVH	8	Unmodified	_VERKRCVH_					0	0	0		nc|ENSG00000137204|Q9Y694-3|SLC22A7	nc|ENSG00000137204|Q9Y694-3|SLC22A7	nc|ENSG00000137204|Q9Y694-3|SLC22A7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8374633789062	2	513.78491	1025.55527	-0.12944	-6.6505E-05	0.19304	9.9183E-05	0.063601	3.2677E-05	513.7849293839952	61.821	1.1229	61.918	61.615	62.738	0.096989					121	40	5	0	0	0	0.33245	1	15120	15120		19.439	19.439	1	6553900			51566	12722	29427	29428	63231	63231					0.04351160616670313
VERKRCVH	8	Unmodified	_VERKRCVH_					0	0	0		nc|ENSG00000137204|Q9Y694-3|SLC22A7	nc|ENSG00000137204|Q9Y694-3|SLC22A7	nc|ENSG00000137204|Q9Y694-3|SLC22A7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	513.78491	1025.55527	-0.019038	-9.7812E-06	0.050062	2.5721E-05	0.031024	1.594E-05	513.7848417387052	61.913	1.2253	61.905	61.553	62.778	-0.0085526	-0.0066721	-8.7941E-05	NaN	19.439	121	44	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6864900			51567	12722	29427	29428							0.04351160616670313
VERNITKPE	9	Unmodified	_VERNITKPE_					0	0	0		ENST00000561483.5_1_15:84323016-84694242:+|nuORF;nc|ENSG00000156218|P82987-2|ADAMTSL3;ENSG00000156218|ENST00000286744|ADAMTSL3	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	ENST00000561483.5_1_15:84323016-84694242:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3010864257812	2	543.301113	1084.58767	0.35093	0.00019066	-0.0024773	-1.3459E-06	0.34845	0.00018931	543.30088935914	16.579	0.44829	16.464	16.219	16.667	-0.11434					26	15	2	0	0	0	0.29176	1	1375	1375		10.074	0	1	113700			51568	5224	29428	29429	63232	63232					0.04876226500641678
VERRRTRPRA	10	Unmodified	_VERRRTRPRA_					0	0	0		ENST00000525768.5_1_11:65628193-65628496:+|nuORF;ENST00000308110.8_1_11:65628088-65628496:+|nuORF	ENST00000525768.5_1_11:65628193-65628496:+|nuORF	ENST00000525768.5_1_11:65628193-65628496:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5560302734375	3	432.928837	1295.76468	-0.19636	-8.501E-05	0.82549	0.00035738	0.62913	0.00027237	432.929732561274	33.944	0.27552	34.011	33.824	34.099	0.066704					11	9	2	0	0	0	0.32051	1	6646	6646		1.9064	0.57673	1	57006			51569	9284	29429	29430	63233	63233					0.12863119894177544
VERTVKEVL	9	Unmodified	_VERTVKEVL_					0	0	0		ENSG00000143256|ENST00000368010|PFDN2	ENSG00000143256|ENST00000368010|PFDN2	ENSG00000143256|ENST00000368010|PFDN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.277587890625	2	536.821681	1071.62881	0.6234	0.00033465	-0.12456	-6.6869E-05	0.49884	0.00026779	536.8216140164399	40.417	0.40657	40.516	40.288	40.694	0.099407					29	14	3	0	0	0	0.23235	1	8651	8651		16.149	2.2431	1	482050			51570	4495	29430	29431	63234	63234					0.09585987540140195
VESDIHGLHK	10	Unmodified	_VESDIHGLHK_					0	0	0		ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENST00000577198.5_1_17:26603697-26633156:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.7991943359375	2	567.798737	1133.58292	0.087674	4.9781E-05	0.15699	8.914E-05	0.24467	0.00013892	567.7987411982732	16.106	0.47976	16.106	15.816	16.295	0					37	16	3	0	0	0	0.35231	1	1232	1232		12.241	6.5088	1	92980			51571	12052	29431	29432	63235	63235					0.02147342357875459
VESDIHGLHK	10	Unmodified	_VESDIHGLHK_					0	0	0		ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENST00000577198.5_1_17:26603697-26633156:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.798828125	2	567.798737	1133.58292	0.16648	9.4527E-05	-0.24011	-0.00013633	-0.073628	-4.1806E-05	567.7986146683568	16.225	0.40942	16.111	15.894	16.304	-0.11434					33	13	3	0	0	0	0.35637	1	1264	1264		11.495	6.7387	1	92299			51572	12052	29431	29432	63236	63236					0.02147342357875459
VESDIHGLHK	10	Unmodified	_VESDIHGLHK_					0	0	0		ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENST00000577198.5_1_17:26603697-26633156:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	567.798737	1133.58292	0.13189	7.4888E-05	-0.066106	-3.7535E-05	0.065786	3.7353E-05	567.798686914043	16.125	0.49011	16.062	15.808	16.298	-0.062534	-0.031071	2.7047E-05	NaN	12.241	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108730			51573	12052	29431	29432							0.02147342357875459
VESELVAEYI	10	Unmodified	_VESELVAEYI_					0	0	0		ENST00000531641.1_1_11:76237526-76255878:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	ENST00000531641.1_1_11:76237526-76255878:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2933349609375	2	576.295162	1150.57577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.87	1	116.89	116.39	117.39	0.020988								0	0	0	0.37664	1	30313	30313		3.5965	1.2938	1				51574	5366	29432	29433	63237	63237					0.006505649668270053
VETLERSL	8	Unmodified	_VETLERSL_					0	0	0		ENSG00000261739|ENST00000562295|GOLGA8S;nc|ENSG00000181984|A6NN73|GOLGA8CP;ENST00000446144.2_1_15:20773467-20778061:+|nuORF	ENSG00000261739|ENST00000562295|GOLGA8S	ENSG00000261739|ENST00000562295|GOLGA8S	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.74578857421875	2	473.763832	945.513111	0.17245	8.1701E-05	-0.0549	-2.601E-05	0.11755	5.5691E-05	473.7634492029993	16.402	0.32102	16.339	16.205	16.526	-0.062534					18	10	2	0	0	0	0.34272	1	1349	1349		7.9102	0	1	48448			51575	8663	29433	29434	63238	63238					0.03817463689279066
VEVAGVVPV	9	Unmodified	_VEVAGVVPV_					0	0	0			REV__ENST00000397809.9_1_12:94853375-94853438:-|nuORF	REV__ENST00000397809.9_1_12:94853375-94853438:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.25225830078125	2	434.760561	867.506569	-0.057082	-2.4817E-05	-0.54055	-0.00023501	-0.59763	-0.00025983	434.7604739850603	71.208	0.9002	71.208	70.873	71.773	0					55	31	3	0	0	0	0.10075	1	18124	18124		38.151	0.17718	1	1235700	+		51576	20676	29434	29435	63239	63239					0.06751570528570028
VEVEGLPV	8	Unmodified	_VEVEGLPV_					0	0	0		nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.9273681640625	2	421.236919	840.459284	0.1644	6.925E-05	1.6382	0.00069008	1.8026	0.00075933	421.2374978928826	36.509	0.32645	36.592	36.458	36.785	0.082355					13	11	2	0	0	0	0.34218	1	7405	7405		5.2307	0	1	102310			51577	12769	29435	29436	63240	63240					0.03267291257589022
VEVGGPTPNPF	11	Unmodified	_VEVGGPTPNPF_					0	0	0		nc|ENSG00000131759|P10276-2|RARA	nc|ENSG00000131759|P10276-2|RARA	nc|ENSG00000131759|P10276-2|RARA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.295166015625	2	557.282389	1112.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.226	1	94.225	93.725	94.725	-0.00051117								0	0	0	0.34476	1	25124	25124		9.3831	1.473	1				51578	12700	29436	29437	63241	63241					-0.001548647649542545
VEVKRPRGVS	10	Unmodified	_VEVKRPRGVS_					0	0	0		nc|ENSG00000130175|P14314-2|PRKCSH;nc|ENSG00000130175|P14314|PRKCSH;ENSG00000130175|ENST00000677123|PRKCSH	nc|ENSG00000130175|P14314-2|PRKCSH	nc|ENSG00000130175|P14314-2|PRKCSH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8383178710938	2	563.838197	1125.66184	0.11346	6.3974E-05	0.73151	0.00041246	0.84498	0.00047643	563.8380151379907	31.16	0.69081	31.16	30.862	31.553	0					59	24	5	0	0	0	0.37133	1	5814	5814		8.7454	0.58988	1	293790			51579	3455	29437	29438	63242	63242					0.10403614382857995
VEVQGAVLNM	10	Unmodified	_VEVQGAVLNM_					0	0	0		ENST00000469388.1_1_X:47489042-47489273:-|nuORF;ENST00000480317.1_1_X:47487885-47489273:-|nuORF;ENST00000485991.5_1_X:47488810-47489273:-|nuORF	ENST00000469388.1_1_X:47489042-47489273:-|nuORF	ENST00000469388.1_1_X:47489042-47489273:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.296142578125	2	530.278792	1058.54303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.515	1	94.515	94.015	95.015	0								0	0	0	0.36441	1	25210	25210		8.7454	2.0222	1				51580	10855	29438	29439	63243	63243					0.016100793629675536
VEVSITKLI	9	Unmodified	_VEVSITKLI_					0	0	0			REV__FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	REV__FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2574157714844	2	501.3157	1000.61685	0.147	7.3691E-05	-0.17786	-8.9166E-05	-0.030869	-1.5475E-05	501.3154894234535	66.931	0.38596	66.918	66.765	67.151	-0.013588					20	13	2	0	0	0	0.25323	1	16721	16721		10.074	0	1	159110	+		51581	17194	29439	29440	63244	63244					0.11656370796947613
VEWGEMEL	8	Unmodified	_VEWGEMEL_					0	0	0			REV__ENST00000460594.5_1_1:6714320-6761860:-|nuORF	REV__ENST00000460594.5_1_1:6714320-6761860:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7236022949219	2	496.723318	991.432083	0.80429	0.00039951	0.21578	0.00010718	1.0201	0.00050669	496.7233333692873	77.769	0.58829	77.769	77.555	78.144	0					53	21	3	0	0	0	0.42758	1	20097	20097		13.508	13.508	1	478300	+		51582	13391	29440	29441	63245	63245					-0.06397560345112652
VEWLPAPFL	9	Unmodified	_VEWLPAPFL_					0	0	0		ENST00000553264.5_1_14:104177568-104178091:-|nuORF	ENST00000553264.5_1_14:104177568-104178091:-|nuORF	ENST00000553264.5_1_14:104177568-104178091:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.3263549804688	2	536.29731	1070.58007	0.67824	0.00036374	-1.6251	-0.00087155	-0.94687	-0.00050781	536.2959522393826	85.956	0.64175	85.956	85.637	86.279	0					45	23	3	0	0	0	0.2451	1	22588	22588		10.824	2.9138	1	131050			51583	11817	29441	29442	63246	63246					0.04760118971034899
VEWLPAPFL	9	Unmodified	_VEWLPAPFL_					0	0	0		ENST00000553264.5_1_14:104177568-104178091:-|nuORF	ENST00000553264.5_1_14:104177568-104178091:-|nuORF	ENST00000553264.5_1_14:104177568-104178091:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.3260498046875	2	536.29731	1070.58007	0.6633	0.00035573	-1.8715	-0.0010037	-1.2082	-0.00064795	536.296157177106	85.893	0.45451	85.884	85.699	86.154	-0.0090027					30	16	2	0	0	0	0.2451	1	22541	22541		15.847	2.3393	1	134970			51584	11817	29441	29442	63247	63247					0.04760118971034899
VEWSSVTL	8	Unmodified	_VEWSSVTL_					0	0	0			REV__ENST00000599417.1_1_19:39888611-39888992:+|nuORF	REV__ENST00000599417.1_1_19:39888611-39888992:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.2474670410156	2	460.739825	919.465098	0.1375	6.335E-05	-0.70719	-0.00032583	-0.56969	-0.00026248	460.7399254571876	62.949	0.72632	63.045	62.663	63.39	0.095722					54	26	3	0	0	0	0.1971	1	15555	15555		60.39	5.616	1	498990	+		51585	22624	29442	29443	63248	63248					0.002143897692462815
VEWSSVTL	8	Unmodified	_VEWSSVTL_					0	0	0			REV__ENST00000599417.1_1_19:39888611-39888992:+|nuORF	REV__ENST00000599417.1_1_19:39888611-39888992:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.2474365234375	2	460.739825	919.465098	0.14155	6.5219E-05	-0.35428	-0.00016323	-0.21273	-9.8011E-05	460.73990730241286	63.068	0.5926	63.059	62.675	63.268	-0.0085526					51	21	3	0	0	0	0.28235	1	15570	15570		38.151	0	1	547030	+		51586	22624	29442	29443	63249	63249					0.002143897692462815
VEYAVLRNI	9	Unmodified	_VEYAVLRNI_					0	0	0		nc|ENSG00000169402|B2RC85-2|RSPH10B2;ENSG00000169402|ENST00000404077|RSPH10B2;ENSG00000155026|ENST00000404406|RSPH10B	nc|ENSG00000169402|B2RC85-2|RSPH10B2	nc|ENSG00000169402|B2RC85-2|RSPH10B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.266845703125	2	538.808574	1075.60259	0.53495	0.00028824	0.17835	9.6097E-05	0.7133	0.00038433	538.8087032001564	68.102	0.36127	68.085	67.838	68.2	-0.016296					19	12	2	0	0	0	0.24688	1	17154	17154		14.838	0	1	177530			51587	5154	29443	29444	63250	63250					0.06781718368665679
VEYEIRVLL	9	Unmodified	_VEYEIRVLL_					0	0	0		PTPRT|p.V1257Efs*16|1|0.18|ENSG00000196090|chr20:42098484-42098497|CCAGAAGTCTGCCA/-|frameshift_variant;ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	PTPRT|p.V1257Efs*16|1|0.18|ENSG00000196090|chr20:42098484-42098497|CCAGAAGTCTGCCA/-|frameshift_variant	PTPRT|p.V1257Efs*16|1|0.18|ENSG00000196090|chr20:42098484-42098497|CCAGAAGTCTGCCA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2785034179688	2	567.331882	1132.64921	-0.14632	-8.3014E-05	-2.6235	-0.0014884	-2.7698	-0.0015714	567.3300507871381	111.55	0.067642	111.55	111.52	111.59	0					18	9	3	0	0	0	0.25879	1	29012	29012		2.0598	0	1	104150			51588	7821	29444	29445	63251	63251					0.0881915819995811
VEYFGANGECC	11	Unmodified	_VEYFGANGECC_					0	0	0			REV__ENST00000477016.5_1_6:31656024-31659403:-|nuORF	REV__ENST00000477016.5_1_6:31656024-31659403:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.7920532226562	2	596.225899	1190.43724	0.61287	0.00036541	2.7362	0.0016314	3.349	0.0019968	596.2275456158932	46.789	0.16508	46.789	46.648	46.813	0					7	5	2	0	0	0	0.33149	1	10541	10541		5.2969	3.6443	1	195720	+		51589	18942	29445	29446	63252	63252					-0.1503562454479379
VEYKLNRFTER	11	Unmodified	_VEYKLNRFTER_					0	0	0			REV__ENSG00000164305|ENST00000308394|CASP3	REV__ENSG00000164305|ENST00000308394|CASP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.26519775390625	3	485.596531	1453.76776	0.35157	0.00017072	-0.21481	-0.00010431	0.13677	6.6414E-05	486.2648588244903	35.837	0.69285	35.919	35.54	36.233	0.082359					52	24	3	0	0	0	0.45822	1	7192	7192		3.5927	0.96144	1	609090	+		51590	17146	29446	29447	63253	63253					0.059029054376196655
VEYLLDRELRF	11	Unmodified	_VEYLLDRELRF_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;ENST00000512928.1_1_5:137708527-137717285:+|nuORF	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.30322265625	3	484.933031	1451.77726	-0.080373	-3.8976E-05	-0.32467	-0.00015744	-0.40505	-0.00019642	485.2668469304394	65.048	0.55815	65.137	64.933	65.491	0.088882					34	20	2	0	0	0	0.33094	1	16164	16164		7.4771	6.3673	1	292750			51591	2963	29447	29448	63254	63254					0.06944673723182859
VEYLLDRELRF	11	Unmodified	_VEYLLDRELRF_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;ENST00000512928.1_1_5:137708527-137717285:+|nuORF	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	484.933031	1451.77726	-0.06012	-2.9154E-05	-0.30891	-0.0001498	-0.36903	-0.00017896	484.93324068699377	65.202	0.52999	65.202	64.988	65.518	0	0.018405	0.00028979	NaN	4.7159	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217540			51592	2963	29447	29448							0.06944673723182859
VEYLLDRELRF	11	Unmodified	_VEYLLDRELRF_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;ENST00000512928.1_1_5:137708527-137717285:+|nuORF	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	484.933031	1451.77726	-0.0074584	-3.6168E-06	-0.86903	-0.00042142	-0.87649	-0.00042504	485.26659986067324	65.223	0.53191	65.211	64.972	65.504	-0.011337	0.027955	-0.00052507	NaN	4.7159	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240150			51593	2963	29447	29448							0.06944673723182859
VEYLTREKVR	10	Unmodified	_VEYLTREKVR_					0	0	0		ENST00000246024.6_1_20:7960815-7961187:-|nuORF	ENST00000246024.6_1_20:7960815-7961187:-|nuORF	ENST00000246024.6_1_20:7960815-7961187:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.2274475097656	3	431.582221	1291.72483	-0.24452	-0.00010553	-1.6271	-0.00070222	-1.8716	-0.00080775	431.58163983105663	22.642	0.38076	22.597	22.409	22.789	-0.044867					19	12	2	0	0	0	0.31994	1	3151	3151		3.0723	1.6171	1	48746			51594	8901	29448	29449	63255	63255					0.0906413538018569
VFAAGEET	8	Unmodified	_VFAAGEET_					0	0	0		nc|ENSG00000035928|P35251|RFC1;ENSG00000035928|ENST00000349703|RFC1	nc|ENSG00000035928|P35251|RFC1	nc|ENSG00000035928|P35251|RFC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2678527832031	2	412.195251	822.375948	-0.22669	-9.3442E-05	0.78466	0.00032343	0.55797	0.00022999	412.19566769178346	75.626	1.0146	75.626	75.154	76.168	0					47	36	2	0	0	0	0.34297	1	19587	19587		6.3541	0.59368	1	168120			51595	576	29449	29450	63256	63256					-0.04234445190286351
VFAALEARSL	10	Unmodified	_VFAALEARSL_					0	0	0		ENST00000450390.6_1_1:1189931-1190276:-|nuORF	ENST00000450390.6_1_1:1189931-1190276:-|nuORF	ENST00000450390.6_1_1:1189931-1190276:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2769165039062	2	538.808574	1075.60259	0.47875	0.00025796	0.31737	0.000171	0.79613	0.00042896	538.8089411627458	68.05	0.46931	68.05	67.732	68.202	0					21	16	2	0	0	0	0.29519	1	17053	17053		15.847	3.3156	1	139530			51596	10638	29450	29451	63257	63257					0.06781718368642942
VFAAPHRG	8	Unmodified	_VFAAPHRG_					0	0	0		nc|ENSG00000156313|Q92834-5|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;ENSG00000156313|ENST00000645032|RPGR	nc|ENSG00000156313|Q92834-5|RPGR	nc|ENSG00000156313|Q92834-5|RPGR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.2643127441406	2	427.735212	853.455871	-0.10012	-4.2826E-05	-0.81528	-0.00034873	-0.91541	-0.00039155	427.7346894671198	47.193	0.64118	47.246	46.984	47.626	0.052574					37	23	2	0	0	0	0.34297	1	10806	10806		2.8892	0	1	244880			51597	5232	29451	29452	63258	63258					0.023280859942246934
VFAGVFNTF	9	Unmodified	_VFAGVFNTF_					0	0	0		ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2584533691406	2	501.258185	1000.50182	0.33426	0.00016755	0.42698	0.00021403	0.76124	0.00038158	501.2582924482892	80	2.4328	80	79.411	81.844	0					300	101	5	0	0	0	6.7091E-11	2	20763	20763;20808		181.33	110.19	1	7669000			51598	3160	29452	29453	63259;63260	63259					0.0015868638580514016
VFAGVFNTF	9	Unmodified	_VFAGVFNTF_					0	0	0		ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7983093261719	2	501.258185	1000.50182	0.37645	0.0001887	-0.34825	-0.00017456	0.028207	1.4139E-05	501.2579845409792	82.051	0.70506	82.051	81.608	82.313	0					36	26	2	0	0	0	0.23784	1	21332	21332		13.906	0	1	151650			51599	3160	29452	29453	63261	63261					0.0015868638580514016
VFAGVFNTF	9	Unmodified	_VFAGVFNTF_					0	0	0		ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2585754394531	2	501.258185	1000.50182	0.30535	0.00015306	0.42832	0.0002147	0.73367	0.00036776	501.25831536732636	79.913	2.5558	79.975	79.335	81.891	0.061417					294	108	5	0	0	0	6.7091E-11	5	20737	20737;20785;20835;20886;21056		181.33	110.19	1	7985900			51600	3160	29452	29453	63262;63263;63264;63265;63266	63262					0.0015868638580514016
VFAGVFNTF	9	Unmodified	_VFAGVFNTF_					0	0	0		ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.25799560546875	2	501.258185	1000.50182	0.31917	0.00015998	-0.16111	-8.0759E-05	0.15805	7.9226E-05	501.25797113683745	82.115	0.9159	82.184	81.95	82.866	0.068993					54	37	2	0	0	0	0.23007	1	21383	21383		19.257	5.3509	1	147710			51601	3160	29452	29453	63267	63267					0.0015868638580514016
VFAGVFNTF	9	Unmodified	_VFAGVFNTF_					0	0	0		ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2680358886719	2	501.258185	1000.50182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.499	1	83.576	83.076	84.076	0.077095								0	0	0	0.22065	1	21838	21838		15.847	0	1				51602	3160	29452	29453	63268	63268					0.0015868638580514016
VFAGVFNTF	9	Unmodified	_VFAGVFNTF_					0	0	0		ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.25848388671875	2	501.258185	1000.50182	0.34412	0.00017249	0.42563	0.00021335	0.76975	0.00038584	501.25826827263126	80.093	3.1164	80.066	79.571	82.688	-0.027252					334	123	5	0	0	0	1.8851E-11	3	20771	20723;20771;20824		197.17	115.55	1	8437700			51603	3160	29452	29453	63269;63270;63271	63270					0.0015868638580514016
VFAKEKKNRI	10	Unmodified	_VFAKEKKNRI_					0	0	0		ENST00000258761.7_2_7:16745756-16745879:+|nuORF	ENST00000258761.7_2_7:16745756-16745879:+|nuORF	ENST00000258761.7_2_7:16745756-16745879:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.91162109375	3	411.587307	1231.74009	-0.50637	-0.00020842	-1.8895	-0.0007777	-2.3959	-0.00098612	411.5865897034071	34.545	0.36285	34.622	34.474	34.837	0.077377					19	12	2	0	0	0	0.31746	1	6799	6799		6.1918	0	1	81751			51604	8947	29453	29454	63272	63272					0.13349046968096445
VFALDPVL	8	Unmodified	_VFALDPVL_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2578430175781	2	437.257654	872.500755	0.075331	3.2939E-05	0.49137	0.00021486	0.5667	0.00024779	437.25773924413824	72.964	0.82566	72.964	72.726	73.551	0					55	29	3	0	0	0	0.39956	1	18634	18634		19.439	0	1	365720			51605	8733	29454	29455	63273	63273					0.05940472016891363
VFALDPVL	8	Unmodified	_VFALDPVL_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.25762939453125	2	437.257654	872.500755	0.0090018	3.9361E-06	0.34928	0.00015273	0.35828	0.00015666	437.2577738654138	72.887	1.0701	72.941	72.655	73.725	0.053841					53	38	2	0	0	0	0.34092	1	18623	18623		13.508	0	1	372420			51606	8733	29454	29455	63274	63274					0.05940472016891363
VFALDPVL	8	Unmodified	_VFALDPVL_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2579650878906	2	437.257654	872.500755	0.16281	7.1192E-05	0.17271	7.5517E-05	0.33552	0.00014671	437.2577503072344	73.011	0.63185	72.982	72.684	73.315	-0.029297					50	22	3	0	0	0	0.42758	1	18623	18623		13.508	0	1	366680			51607	8733	29454	29455	63275	63275					0.05940472016891363
VFALHHYKP	9	Unmodified	_VFALHHYKP_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;SMC4|p.N1243Mfs*5|1|0.2|ENSG00000113810|chr3:160433665-160433665|A/-|frameshift_variant;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.318603515625	2	556.306001	1110.59745	0.24242	0.00013486	-0.21593	-0.00012013	0.026485	1.4734E-05	556.3061127883777	16.78	0.5197	16.78	16.521	17.041	0					34	17	3	0	0	0	0.34536	1	1494	1494		2.0598	0.57785	1	95369			51608	2532	29455	29456	63276	63276					0.04657459296709021
VFALTDFVI	9	Unmodified	_VFALTDFVI_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-2|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.3034057617188	2	512.789318	1023.56408	0.030471	1.5625E-05	1.1948	0.0006127	1.2253	0.00062833	512.789766513538	80.98	0.73007	81.045	80.748	81.478	0.065094					43	35	2	0	0	0	0.24739	1	21028	21028		13.508	0.97634	1	85195			51609	2646	29456	29457	63277	63277					0.05324412734148609
VFAMKILLY	9	Unmodified	_VFAMKILLY_					0	0	0			REV__ENST00000519875.1_1_8:21997445-21997756:-|nuORF	REV__ENST00000519875.1_1_8:21997445-21997756:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7739868164062	2	549.325014	1096.63547	0.31423	0.00017261	-0.079226	-4.3521E-05	0.235	0.00012909	549.3248632588846	29.154	0.47359	29.167	29.033	29.507	0.013474					25	16	2	0	0	0	0.25879	1	5170	5170		4.756	1.1595	1	109440	+		51610	21877	29457	29458	63278	63278					0.09102209167190267
VFAPYPSHF	9	Unmodified	_VFAPYPSHF_					0	0	0		ENSG00000166927|ENST00000300184|MS4A7	ENSG00000166927|ENST00000300184|MS4A7	ENSG00000166927|ENST00000300184|MS4A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7822265625	2	532.763635	1063.51272	0.72925	0.00038852	0.043406	2.3125E-05	0.77266	0.00041165	532.7635623175256	54.604	0.6489	54.588	54.251	54.9	-0.015923					48	22	3	0	0	0	0.11517	1	12961	12961		36.044	7.5574	1	1535600			51611	6131	29458	29459	63279	63279					-0.016499112399060323
VFAPYPSHF	9	Unmodified	_VFAPYPSHF_					0	0	0		ENSG00000166927|ENST00000300184|MS4A7	ENSG00000166927|ENST00000300184|MS4A7	ENSG00000166927|ENST00000300184|MS4A7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	532.763635	1063.51272	0.77812	0.00041456	0.0086314	4.5985E-06	0.78675	0.00041915	532.7636561072661	54.424	0.67487	54.424	54.162	54.837	0	-0.064439	-7.8E-05	NaN	36.044	44	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1505700			51612	6131	29458	29459							-0.016499112399060323
VFAPYPSHF	9	Unmodified	_VFAPYPSHF_					0	0	0		ENSG00000166927|ENST00000300184|MS4A7	ENSG00000166927|ENST00000300184|MS4A7	ENSG00000166927|ENST00000300184|MS4A7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	532.763635	1063.51272	0.61226	0.00032619	0.16951	9.031E-05	0.78177	0.0004165	532.7637697735818	54.389	0.66618	54.452	54.168	54.834	0.063206	-0.035721	9.3422E-05	NaN	36.044	45	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1413500			51613	6131	29458	29459							-0.016499112399060323
VFCPLRYL	8	Unmodified	_VFCPLRYL_					0	0	0			REV__ENSG00000197121|ENST00000354764|PGAP1	REV__ENSG00000197121|ENST00000354764|PGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.7783508300781	2	505.778231	1009.54191	0.22059	0.00011157	0.13627	6.8924E-05	0.35686	0.00018049	505.7782281907513	21.875	0.97644	21.826	21.52	22.496	-0.049377					88	34	4	0	0	0	0.45015	1	2953	2953		5.7604	1.4312	1	424640	+		51614	18711	29459	29460	63280	63280					0.037519097847280136
VFCSGARF	8	Unmodified	_VFCSGARF_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.71563720703125	2	443.71563	885.416708	0.18931	8.3998E-05	0.13756	6.1039E-05	0.32687	0.00014504	443.7155735952803	31.744	1.4712	31.744	31.394	32.865	0					103	52	3	0	0	0	0.33441	1	5957	5957		26.884	0.54238	1	6615500	+		51615	18751	29460	29461	63281	63281					-0.03058382351639466
VFCSGARF	8	Unmodified	_VFCSGARF_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.71551513671875	2	443.71563	885.416708	0.29895	0.00013265	0.02813	1.2482E-05	0.32708	0.00014513	443.7155021479725	31.868	1.53	31.909	31.772	33.302	0.040989					111	54	3	0	0	0	0.33441	1	6021	6021		26.884	0.54238	1	6508100	+		51616	18751	29460	29461	63282	63282					-0.03058382351639466
VFDAGYLEF	9	Unmodified	_VFDAGYLEF_					0	0	0			REV__ENST00000427220.5_1_3:9860474-9876502:+|nuORF	REV__ENST00000427220.5_1_3:9860474-9876502:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3316040039062	2	530.752933	1059.49131	0.40426	0.00021456	-1.7919	-0.00095106	-1.3876	-0.0007365	530.7518079923328	73.381	0.47046	73.381	73.133	73.604	0					28	16	2	0	0	0	0.24311	1	18768	18768		16.942	3.0362	1	135140	+		51617	19053	29461	29462	63283	63283					-0.03605341059278544
VFDAGYLEF	9	Unmodified	_VFDAGYLEF_					0	0	0			REV__ENST00000427220.5_1_3:9860474-9876502:+|nuORF	REV__ENST00000427220.5_1_3:9860474-9876502:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3316650390625	2	530.752933	1059.49131	0.50804	0.00026964	-2.0865	-0.0011074	-1.5784	-0.00083776	530.7516832728908	73.37	0.56748	73.34	73.126	73.693	-0.029305					30	20	2	0	0	0	0.24311	1	18774	18774		16.942	2.3606	1	179230	+		51618	19053	29461	29462	63284	63284					-0.03605341059278544
VFDLLGIPLY	10	Unmodified	_VFDLLGIPLY_					0	0	0		nc|ENSG00000143409|Q8N5J2-2|MINDY1;nc|ENSG00000143409|Q8N5J2-4|MINDY1;ENSG00000143409|ENST00000683666|MINDY1;nc|ENSG00000143409|Q8N5J2-3|MINDY1	nc|ENSG00000143409|Q8N5J2-2|MINDY1	nc|ENSG00000143409|Q8N5J2-2|MINDY1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.7254028320312	2	575.33135	1148.64815	0.36429	0.00020959	0.12213	7.0265E-05	0.48642	0.00027985	575.3313751407861	49.397	0.54823	49.397	49.077	49.626	0					27	19	2	0	0	0	0.31482	1	11422	11422		11.64	2.2572	1	116100			51619	4513	29462	29463	63285	63285					0.07976943831044991
VFDLPFCF	8	Unmodified	_VFDLPFCF_					0	0	0			REV__nc|ENSG00000291085|Q9H0A3|TMEM191A	REV__nc|ENSG00000291085|Q9H0A3|TMEM191A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.23553466796875	2	494.235864	986.457176	0.19167	9.473E-05	-0.69632	-0.00034415	-0.50465	-0.00024942	494.2354108603501	15.992	0.4726	15.878	15.718	16.191	-0.11434					22	15	2	0	0	0	0.45015	1	1210	1210		5.7604	0	1	58660	+		51620	23256	29463	29464	63286	63286					-0.03659460751896404
VFDPALNLF	9	Unmodified	_VFDPALNLF_					0	0	0		ENSG00000151148|ENST00000342494|UBE3B;ENST00000538070.1_1_12:109958991-109971866:+|nuORF;ENST00000449510.6_1_12:109955755-109964222:+|nuORF	ENSG00000151148|ENST00000342494|UBE3B	ENSG00000151148|ENST00000342494|UBE3B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2894897460938	2	518.279118	1034.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.364	1	87.364	86.864	87.864	0								0	0	0	0.19932	1	23033	23033		22.736	0.98964	1				51621	4940	29464	29465	63287	63287					0.027792420743026014
VFDPALNLF	9	Unmodified	_VFDPALNLF_					0	0	0		ENSG00000151148|ENST00000342494|UBE3B;ENST00000538070.1_1_12:109958991-109971866:+|nuORF;ENST00000449510.6_1_12:109955755-109964222:+|nuORF	ENSG00000151148|ENST00000342494|UBE3B	ENSG00000151148|ENST00000342494|UBE3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.28955078125	2	518.279118	1034.54368	0.37843	0.00019613	0.79498	0.00041202	1.1734	0.00060816	518.2795429865223	87.189	0.36217	87.276	87.191	87.553	0.08709					20	16	2	0	0	0	0.20626	1	22995	22995		22.736	6.8891	1	89485			51622	4940	29464	29465	63288	63288					0.027792420743026014
VFDPKVFTF	9	Unmodified	_VFDPKVFTF_					0	0	0		ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	ENSG00000112297|ENST00000633556|CRYBG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2769775390625	2	550.294768	1098.57498	0.33834	0.00018618	2.8894	0.00159	3.2277	0.0017762	550.29660076831	73.539	0.35947	73.592	73.389	73.749	0.053833					16	12	2	0	0	0	0.23749	1	18775	18775		20.415	2.2682	1	108790			51623	2429	29465	29466	63289	63289					0.029638151084100173
VFDQTCVDF	9	Unmodified	_VFDQTCVDF_					0	0	0		R3HCC1L|p.F415Vfs*15|1|0.33|ENSG00000166024|chr10:98209352-98209353|-/A|frameshift_variant;nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L;ENSG00000166024|ENST00000298999|R3HCC1L;nc|ENSG00000166024|Q7Z5L2|R3HCC1L	R3HCC1L|p.F415Vfs*15|1|0.33|ENSG00000166024|chr10:98209352-98209353|-/A|frameshift_variant	R3HCC1L|p.F415Vfs*15|1|0.33|ENSG00000166024|chr10:98209352-98209353|-/A|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.232666015625	2	537.23405	1072.45355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.896	1	97.896	97.396	98.396	0								0	0	0	0.19013	1	26187	26187		25.399	1.3787	1				51624	6022	29466	29467	63290	63290					-0.07978175316407032
VFDQTCVDF	9	Unmodified	_VFDQTCVDF_					0	0	0		R3HCC1L|p.F415Vfs*15|1|0.33|ENSG00000166024|chr10:98209352-98209353|-/A|frameshift_variant;nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L;ENSG00000166024|ENST00000298999|R3HCC1L;nc|ENSG00000166024|Q7Z5L2|R3HCC1L	R3HCC1L|p.F415Vfs*15|1|0.33|ENSG00000166024|chr10:98209352-98209353|-/A|frameshift_variant	R3HCC1L|p.F415Vfs*15|1|0.33|ENSG00000166024|chr10:98209352-98209353|-/A|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2330932617188	2	537.23405	1072.45355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.031	1	98.031	97.531	98.531	0								0	0	0	0.23852	1	26223	26223		10.074	0.6908	1				51625	6022	29466	29467	63291	63291					-0.07978175316407032
VFDRRWDRFRF	11	Unmodified	_VFDRRWDRFRF_					0	0	0		ENST00000474433.5_1_7:105254161-105283525:-|nuORF;nc|ENSG00000146776|Q9ULK2-3|ATXN7L1;ENSG00000146776|ENST00000419735|ATXN7L1	ENST00000474433.5_1_7:105254161-105283525:-|nuORF	ENST00000474433.5_1_7:105254161-105283525:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3134155273438	3	533.947898	1598.82186	0.53863	0.0002876	-0.69359	-0.00037034	-0.15496	-8.2739E-05	534.2819639449687	55.399	0.69173	55.47	55.188	55.88	0.070885					73	25	4	0	0	0	0.33326	1	13271	13271		1.4551	1.0469	1	1867600			51626	4727	29467	29468	63292	63292					0.046405423798660195
VFDRRWDRFRF	11	Unmodified	_VFDRRWDRFRF_					0	0	0		ENST00000474433.5_1_7:105254161-105283525:-|nuORF;nc|ENSG00000146776|Q9ULK2-3|ATXN7L1;ENSG00000146776|ENST00000419735|ATXN7L1	ENST00000474433.5_1_7:105254161-105283525:-|nuORF	ENST00000474433.5_1_7:105254161-105283525:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3134155273438	3	533.947898	1598.82186	0.57887	0.00030908	-0.83884	-0.0004479	-0.25997	-0.00013881	534.281819382222	55.646	0.75792	55.627	55.349	56.107	-0.019081					70	27	4	0	0	0	0.33326	1	13302	13302		1.4551	0.24029	1	1649700			51627	4727	29467	29468	63293	63293					0.046405423798660195
VFDTAIAHLF	10	Unmodified	_VFDTAIAHLF_					0	0	0		ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3034057617188	2	567.303124	1132.5917	0.39248	0.00022266	0.5022	0.0002849	0.89468	0.00050756	567.3032313719	74.901	0.56346	74.953	74.732	75.295	0.052361					48	20	3	0	0	0	1.2425E-06	1	19216	19216		156.16	101.38	1	620130			51628	7247	29468	29469	63294	63294					0.030703159943413993
VFDTAIAHLF	10	Unmodified	_VFDTAIAHLF_					0	0	0		ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	567.303124	1132.5917	0.52206	0.00029616	0.58295	0.00033071	1.105	0.00062687	567.3033681011794	74.926	0.50286	74.926	74.703	75.206	0	-0.01173	0.00010884	NaN	156.16	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	549540			51629	7247	29468	29469							0.030703159943413993
VFDTAIAHLF	10	Unmodified	_VFDTAIAHLF_					0	0	0		ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	567.303124	1132.5917	0.56165	0.00031863	0.41108	0.00023321	0.97273	0.00055183	567.3032799165553	74.966	0.58694	74.935	74.7	75.286	-0.031487	-0.0034385	-8.6171E-05	NaN	156.16	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	645240			51630	7247	29468	29469							0.030703159943413993
VFDVLYSE	8	Unmodified	_VFDVLYSE_					0	0	0		nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1;ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1	nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7828063964844	2	486.239658	970.464763	-0.077277	-3.7575E-05	1.2424	0.00060412	1.1652	0.00056654	486.24011027002007	13.131	0.37657	13.032	12.841	13.217	-0.099291					18	12	2	0	0	0	0.34247	1	381	381		8.5933	0	1	20969			51631	12560	29469	29470	63295	63295					-0.021650299506063675
VFDVLYSE	8	Unmodified	_VFDVLYSE_					0	0	0		nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1;ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1	nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	486.239658	970.464763	-0.091633	-4.4555E-05	0.89831	0.00043679	0.80667	0.00039224	486.24013173457024	13.049	0.32845	13.049	12.925	13.254	0	0.018948	-0.0001296	NaN	8.5933	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32105			51632	12560	29469	29470							-0.021650299506063675
VFDVLYSE	8	Unmodified	_VFDVLYSE_					0	0	0		nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1;ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1	nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	486.239658	970.464763	-0.11624	-5.652E-05	0.83514	0.00040608	0.7189	0.00034956	486.24018622129876	13.077	0.229	13.01	12.905	13.134	-0.067496	-0.020608	-0.00019102	NaN	8.5933	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25260			51633	12560	29469	29470							-0.021650299506063675
VFDYQLYF	8	Unmodified	_VFDYQLYF_					0	0	0		ENST00000520623.5_1_8:27348689-27396319:+|nuORF;nc|ENSG00000120915|P34913-3|EPHX2;nc|ENSG00000120915|P34913-2|EPHX2;ENSG00000120915|ENST00000521400|EPHX2	ENST00000520623.5_1_8:27348689-27396319:+|nuORF	ENST00000520623.5_1_8:27348689-27396319:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.291015625	2	547.7633	1093.51205	0.2023	0.00011081	0.15409	8.4403E-05	0.35639	0.00019522	547.7638761630118	13.04	0.14176	12.941	12.869	13.011	-0.099291					7	4	2	0	0	0	0.34437	1	289	289		0.69038	0	1	29955			51634	2975	29470	29471	63296	63296					-0.030967506796287125
VFDYQLYF	8	Unmodified	_VFDYQLYF_					0	0	0		ENST00000520623.5_1_8:27348689-27396319:+|nuORF;nc|ENSG00000120915|P34913-3|EPHX2;nc|ENSG00000120915|P34913-2|EPHX2;ENSG00000120915|ENST00000521400|EPHX2	ENST00000520623.5_1_8:27348689-27396319:+|nuORF	ENST00000520623.5_1_8:27348689-27396319:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	547.7633	1093.51205	0.085913	4.706E-05	-0.63229	-0.00034635	-0.54638	-0.00029929	548.2642215369691	12.977	0.13264	12.977	12.925	13.058	0	0.018132	-0.000414	NaN	0.69038	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21467			51635	2975	29470	29471							-0.030967506796287125
VFEEAFFKF	9	Unmodified	_VFEEAFFKF_					0	0	0		ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.29248046875	2	582.292225	1162.5699	0.30261	0.00017621	0.01434	8.3502E-06	0.31695	0.00018456	582.2922214252642	76.025	0.89912	75.993	75.391	76.29	-0.031487					53	32	2	0	0	0	0.21303	1	19541	19541		21.747	0	1	394440			51636	2594	29471	29472	63297	63297					-0.004884887541948046
VFEEAFFKF	9	Unmodified	_VFEEAFFKF_					0	0	0		ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	582.292225	1162.5699	0.039543	2.3026E-05	0.54997	0.00032024	0.58951	0.00034327	582.2925625434461	75.954	0.71756	75.954	75.565	76.283	0	-0.01189	0.0003505	NaN	21.747	44	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330460			51637	2594	29471	29472							-0.004884887541948046
VFEEAFFKF	9	Unmodified	_VFEEAFFKF_					0	0	0		ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	582.292225	1162.5699	0.21252	0.00012375	0.094388	5.4961E-05	0.30691	0.00017871	582.2922465121385	75.897	0.70697	75.951	75.509	76.216	0.053413	-0.015374	-0.00018006	NaN	21.747	50	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233740			51638	2594	29471	29472							-0.004884887541948046
VFERRHVI	8	Unmodified	_VFERRHVI_					0	0	0		ENST00000483923.5_1_10:100150731-100167745:-|nuORF;ENSG00000119943|ENST00000370575|PYROXD2	ENST00000483923.5_1_10:100150731-100167745:-|nuORF	ENST00000483923.5_1_10:100150731-100167745:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3297119140625	2	528.309075	1054.6036	0.47236	0.00024955	1.9519	0.0010312	2.4242	0.0012807	528.3078563504856	43	0.71025	43.086	42.78	43.49	0.085197					60	25	3	0	0	0	0.42758	1	9483	9483		13.508	1.8676	1	461910			51639	2917	29472	29473	63298	63298					0.07847977528217598
VFERRHVI	8	Unmodified	_VFERRHVI_					0	0	0		ENST00000483923.5_1_10:100150731-100167745:-|nuORF;ENSG00000119943|ENST00000370575|PYROXD2	ENST00000483923.5_1_10:100150731-100167745:-|nuORF	ENST00000483923.5_1_10:100150731-100167745:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	528.309075	1054.6036	0.49296	0.00026043	-0.58861	-0.00031097	-0.095648	-5.0532E-05	528.307629230282	42.996	0.49708	42.996	42.76	43.257	0	-0.0079856	-0.00088248	NaN	13.508	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	490330			51640	2917	29472	29473							0.07847977528217598
VFERRHVI	8	Unmodified	_VFERRHVI_					0	0	0		ENST00000483923.5_1_10:100150731-100167745:-|nuORF;ENSG00000119943|ENST00000370575|PYROXD2	ENST00000483923.5_1_10:100150731-100167745:-|nuORF	ENST00000483923.5_1_10:100150731-100167745:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.309075	1054.6036	0.30029	0.00015865	-0.27521	-0.0001454	0.025077	1.3248E-05	528.3078461740118	42.839	0.56165	42.93	42.772	43.334	0.091362	-0.073623	-0.00055135	NaN	13.508	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411950			51641	2917	29472	29473							0.07847977528217598
VFETIIHSY	9	Unmodified	_VFETIIHSY_					0	0	0		ENSG00000105122|ENST00000343625|RASAL3;nc|ENSG00000105122|Q86YV0-2|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.7708129882812	2	554.787307	1107.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.681	1	65.681	65.181	66.181	0								0	0	0	0.18374	1	16398	16398		26.884	0	1				51642	1946	29473	29474	63299	63299					0.010583232404542287
VFETTYAMI	9	Unmodified	_VFETTYAMI_					0	0	0			REV__ENSG00000183873|ENST00000423572|SCN5A	REV__ENSG00000183873|ENST00000423572|SCN5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7613525390625	2	537.762443	1073.51033	0.45843	0.00024653	-1.4159	-0.00076142	-0.95747	-0.00051489	537.761244640302	82.575	0.71579	82.648	82.24	82.956	0.073097					42	15	3	0	0	0	0.22883	1	21556	21556		19.439	1.304	1	595940	+		51643	18291	29474	29475	63300	63300					-0.02348127759887575
VFETTYAMI	9	Unmodified	_VFETTYAMI_					0	0	0			REV__ENSG00000183873|ENST00000423572|SCN5A	REV__ENSG00000183873|ENST00000423572|SCN5A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	537.762443	1073.51033	0.62872	0.0003381	-2.2138	-0.0011905	-1.5851	-0.00085238	537.7611167831257	82.712	0.41791	82.691	82.45	82.868	-0.020584	0.018807	-0.00023276	NaN	19.439	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	610220	+		51644	18291	29474	29475							-0.02348127759887575
VFEWETPVVC	10	Unmodified	_VFEWETPVVC_					0	0	0		IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.52679443359375	3	403.526725	1207.55835	-0.015708	-6.3388E-06	0.57182	0.00023074	0.55611	0.00022441	403.5268839333007	74.197	1.6809	74.197	73.497	75.178	0					110	58	2	0	0	0	0.3641	1	19105	19105		5.7834	0	1	871690			51645	7927	29475	29476	63301	63301					-0.03713053839828717
VFEYLVSGF	9	Unmodified	_VFEYLVSGF_					0	0	0			REV__ENST00000497497.1_1_10:119013719-119036774:+|nuORF	REV__ENST00000497497.1_1_10:119013719-119036774:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7620849609375	2	530.771126	1059.5277	0.60267	0.00031988	0.35395	0.00018787	0.95662	0.00050775	530.7712194733764	89.23	0.63783	89.23	89.007	89.645	0					43	33	2	0	0	0	0.24581	1	23665	23665		16.942	0	1	256870	+		51646	17250	29476	29477	63302	63302					0.00031535837410956447
VFFAALLW	8	Unmodified	_VFFAALLW_					0	0	0		ENST00000377658.8_1_1:6651099-6651537:-|nuORF	ENST00000377658.8_1_1:6651099-6651537:-|nuORF	ENST00000377658.8_1_1:6651099-6651537:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.26715087890625	2	483.776014	965.537475	-0.16105	-7.7913E-05	3.4199	0.0016544	3.2588	0.0015765	483.7779460116095	12.394	0.20962	12.326	12.167	12.377	-0.06806					8	6	2	0	0	0	0.34434	1	99	99		0.79363	0	1	16651			51647	9940	29477	29478	63303	63303					0.05332768633468277
VFFEVSPVSF	10	Unmodified	_VFFEVSPVSF_					0	0	0		ENSG00000087263|ENST00000566157|OGFOD1;nc|ENSG00000087263|Q8N543-2|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.2977905273438	2	579.297507	1156.58046	0.40314	0.00023354	0.054599	3.1629E-05	0.45773	0.00026516	579.2975702382191	88.48	1.1898	88.48	88.22	89.41	0					158	57	5	0	0	0	0.0072369	4	23393	23351;23393;23440;23531		85.642	62.905	1	1079800			51648	1301	29478	29479	63304;63305;63306;63307	63305					0.0084349390024272
VFFEVSPVSF	10	Unmodified	_VFFEVSPVSF_					0	0	0		ENSG00000087263|ENST00000566157|OGFOD1;nc|ENSG00000087263|Q8N543-2|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.2978515625	2	579.297507	1156.58046	0.38106	0.00022075	0.10435	6.0452E-05	0.48541	0.0002812	579.2975475513975	88.384	1.0571	88.473	88.19	89.248	0.089203					112	45	4	0	0	0	0.0042359	4	23351	23308;23351;23397;23441		96.111	70.712	1	1328300			51649	1301	29478	29479	63308;63309;63310;63311	63309					0.0084349390024272
VFFEVSPVSF	10	Unmodified	_VFFEVSPVSF_					0	0	0		ENSG00000087263|ENST00000566157|OGFOD1;nc|ENSG00000087263|Q8N543-2|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.2977294921875	2	579.297507	1156.58046	0.35655	0.00020655	0.13609	7.8839E-05	0.49265	0.00028539	579.2976283393534	88.515	1.3571	88.512	88.224	89.581	-0.0028381					148	62	5	0	0	0	0.001143	3	23373	23373;23420;23469		118.89	86.589	1	1481000			51650	1301	29478	29479	63312;63313;63314	63312					0.0084349390024272
VFFFFFVF	8	Unmodified	_VFFFFFVF_					0	0	0		ENST00000477089.1_1_15:43789699-43802854:-|nuORF	ENST00000477089.1_1_15:43789699-43802854:-|nuORF	ENST00000477089.1_1_15:43789699-43802854:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2776489257812	2	550.286214	1098.55788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.18	1	80.153	79.653	80.653	-0.026825								0	0	0	0.34461	1	20811	20811		17.087	0	1				51651	10953	29479	29480	63315	63315					0.012539392932694682
VFFFTSRSD	9	Unmodified	_VFFFTSRSD_					0	0	0		ENST00000487777.5_1_2:207631381-207653673:+|nuORF	ENST00000487777.5_1_2:207631381-207653673:+|nuORF	ENST00000487777.5_1_2:207631381-207653673:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7718505859375	2	553.269281	1104.52401	0.52836	0.00029232	1.0654	0.00058945	1.5937	0.00088177	553.2698641213232	51.254	1.3881	51.254	50.686	52.074	0					127	51	3	0	0	0	0.2451	1	11853	11853		15.847	12.251	1	1387000			51652	11124	29480	29481	63316	63316					-0.024071339364127198
VFFGQFSEL	9	Unmodified	_VFFGQFSEL_					0	0	0			REV__nc|ENSG00000263715|P34998-5|CRHR1	REV__nc|ENSG00000263715|P34998-5|CRHR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.829345703125	2	537.26875	1072.52295	0.76666	0.0004119	-0.21804	-0.00011715	0.54862	0.00029476	537.2686587883596	58.248	0.89418	58.231	57.848	58.743	-0.0172					55	32	2	0	0	0	0.2451	1	14019	14019		15.847	3.3156	1	273240	+		51653	15075	29481	29482	63317	63317					-0.010413483053298478
VFFGWLPIHG	10	Unmodified	_VFFGWLPIHG_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|436|3|anti-sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|436|3|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8338623046875	2	586.816202	1171.61785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.419	1	81.419	80.919	81.919	0								0	0	0	0.3664	1	21208	21208		7.9102	0	1		+		51654	22756	29482	29483	63318	63318					0.03890629956504199
VFFIFFFVFFN	11	Unmodified	_VFFIFFFVFFN_					0	0	0			REV__ENST00000472397.5_1_1:155226487-155230214:-|nuORF	REV__ENST00000472397.5_1_1:155226487-155230214:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.24700927734375	3	491.925037	1472.75328	0.3701	0.00018206	-1.142	-0.0005618	-0.77194	-0.00037974	491.9244615540358	24.482	0.52298	24.409	24.151	24.674	-0.072557					43	17	3	0	0	0	0.33296	1	3743	3743		2.6312	0.72486	1	209860	+		51655	14925	29483	29484	63319	63319					0.03581485027461895
VFFINEEAK	9	Unmodified	_VFFINEEAK_					0	0	0		nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-7|PLEKHA5;ENST00000539256.5_1_12:19282733-19418734:+|nuORF	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7877807617188	2	548.787307	1095.56006	0.16394	8.9969E-05	0.3944	0.00021644	0.55834	0.00030641	548.7876615263168	14.813	0.308	14.748	14.618	14.926	-0.064413					25	10	3	0	0	0	0.25526	1	846	846		4.3292	0	1	381260			51656	671	29484	29485	63320	63320					0.016103232404248047
VFFINEEAK	9	Unmodified	_VFFINEEAK_					0	0	0		nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-7|PLEKHA5;ENST00000539256.5_1_12:19282733-19418734:+|nuORF	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	548.787307	1095.56006	0.11034	6.0555E-05	0.31481	0.00017276	0.42515	0.00023332	548.7876620701318	14.639	0.34027	14.639	14.505	14.845	0	-0.050667	-0.00014653	NaN	4.3292	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	430050			51657	671	29484	29485							0.016103232404248047
VFFINEEAK	9	Unmodified	_VFFINEEAK_					0	0	0		nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-7|PLEKHA5;ENST00000539256.5_1_12:19282733-19418734:+|nuORF	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.787307	1095.56006	0.2376	0.00013039	0.53452	0.00029334	0.77212	0.00042373	548.7876186023481	14.79	0.28716	14.682	14.562	14.849	-0.10802	-0.0077102	9.4626E-05	NaN	4.3292	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	444520			51658	671	29484	29485							0.016103232404248047
VFFISCDCLCV	11	Unmodified	_VFFISCDCLCV_					0	0	0		ENST00000554465.5_1_14:70237039-70238175:+|nuORF	ENST00000554465.5_1_14:70237039-70238175:+|nuORF	ENST00000554465.5_1_14:70237039-70238175:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.3347778320312	2	624.776713	1247.53887	0.11974	7.481E-05	0.54703	0.00034177	0.66676	0.00041658	624.7770706114837	86.489	1.2212	86.574	85.939	87.16	0.084251					96	48	3	0	0	0	0.3259	1	22743	22743		13.906	5.1606	1	176840			51659	11833	29485	29486	63321	63321					-0.07499469446588591
VFFLDITF	8	Unmodified	_VFFLDITF_					0	0	0		ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000182247|ENST00000396703|UBE2E2;ENSG00000170035|ENST00000410062|UBE2E3;ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000411687.1_1_X:14262689-14263010:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2580261230469	2	501.270761	1000.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.211	1	81.187	80.687	81.687	-0.02404								0	0	0	0.35985	1	21127	21127		10.183	3.8293	1				51660	6418;11213	29486	29487	63322	63322					0.02672741188382588
VFFLQHNTL	9	Unmodified	_VFFLQHNTL_					0	0	0			REV__nc|ENSG00000145194|P0DPD6-3|ECE2	REV__nc|ENSG00000145194|P0DPD6-3|ECE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2734375	2	559.803291	1117.59203	0.41785	0.00023391	0.071706	4.0141E-05	0.48956	0.00027406	559.8031907971465	64.576	0.5799	64.567	64.315	64.895	-0.0095367					53	20	3	0	0	0	0.2451	1	15999	15999		15.847	0	1	391340	+		51661	16281	29487	29488	63323	63323					0.03793735714248214
VFFNFRRRPWF	11	Unmodified	_VFFNFRRRPWF_					0	0	0			REV__ENSG00000167646|ENST00000524407|DNAAF3	REV__ENSG00000167646|ENST00000524407|DNAAF3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8182983398438	3	524.6176	1570.83097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.069	1	11.973	11.473	12.473	-0.096607								0	0	0	0.3819	1	19	19		0.45452	0.35968	1		+		51662	17398	29488	29489	63324	63324					0.0683893573620935
VFFPRPFSI	9	Unmodified	_VFFPRPFSI_					0	0	0		ENST00000395111.7_1_19:3452656-3462859:+|nuORF	ENST00000395111.7_1_19:3452656-3462859:+|nuORF	ENST00000395111.7_1_19:3452656-3462859:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3109130859375	2	555.310752	1108.60695	0.20191	0.00011212	0.035019	1.9447E-05	0.23693	0.00013157	555.3107958139782	73.489	0.84914	73.543	72.948	73.797	0.053841					76	30	4	0	0	0	0.20881	1	18798	18798		27.629	3.6082	1	320070			51663	10083	29489	29490	63325	63325					0.056992275822494776
VFFPRPFSI	9	Unmodified	_VFFPRPFSI_					0	0	0		ENST00000395111.7_1_19:3452656-3462859:+|nuORF	ENST00000395111.7_1_19:3452656-3462859:+|nuORF	ENST00000395111.7_1_19:3452656-3462859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3107299804688	2	555.310752	1108.60695	0.21601	0.00011995	0.10752	5.9705E-05	0.32353	0.00017966	555.812608501212	73.582	0.78305	73.551	73.072	73.855	-0.030655					75	28	4	0	0	0	0.17277	1	18827	18827		27.629	3.6082	1	357510			51664	10083	29489	29490	63326	63326					0.056992275822494776
VFFPRPFSI	9	Unmodified	_VFFPRPFSI_					0	0	0		ENST00000395111.7_1_19:3452656-3462859:+|nuORF	ENST00000395111.7_1_19:3452656-3462859:+|nuORF	ENST00000395111.7_1_19:3452656-3462859:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	555.310752	1108.60695	0.13894	7.7157E-05	0.30945	0.00017184	0.44839	0.000249	555.3109085927259	73.531	0.88599	73.531	72.909	73.795	0	-0.010661	0.00019747	NaN	27.629	64	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302810			51665	10083	29489	29490							0.056992275822494776
VFFRRQEL	8	Unmodified	_VFFRRQEL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.Y1107Ifs*12|1|0.29|ENSG00000175054|chr3:142547763-142547763|A/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.8096313476562	2	547.808908	1093.60326	0.66965	0.00036684	0.20862	0.00011429	0.87827	0.00048112	547.8089121743285	34.049	1.0219	34.049	33.753	34.775	0					91	36	4	0	0	0	0.25425	2	6637	6637;6731		36.044	1.5255	1	1312200			51666	6835	29490	29491	63327;63328	63327					0.06020557808369631
VFFRRQEL	8	Unmodified	_VFFRRQEL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.Y1107Ifs*12|1|0.29|ENSG00000175054|chr3:142547763-142547763|A/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.809326171875	2	547.808908	1093.60326	1.0008	0.00054824	-0.13948	-7.6408E-05	0.8613	0.00047183	547.8087452646537	33.852	0.94371	33.919	33.624	34.567	0.06636					101	33	4	0	0	0	0.19197	1	6667	6667		44.407	14.182	1	1349500			51667	6835	29490	29491	63329	63329					0.06020557808369631
VFFRRQEL	8	Unmodified	_VFFRRQEL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.Y1107Ifs*12|1|0.29|ENSG00000175054|chr3:142547763-142547763|A/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8097534179688	2	547.808908	1093.60326	0.36965	0.0002025	0.45744	0.00025059	0.82709	0.00045309	547.809034015349	33.851	0.83036	33.918	33.633	34.463	0.0667					91	29	4	0	0	0	0.25425	1	6564	6564		36.044	1.1121	1	1422100			51668	6835	29490	29491	63330	63330					0.06020557808369631
VFFVEFLT	8	Unmodified	_VFFVEFLT_					0	0	0		ENSG00000189181|ENST00000342623|OR14I1	ENSG00000189181|ENST00000342623|OR14I1	ENSG00000189181|ENST00000342623|OR14I1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.258544921875	2	501.270761	1000.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.439	1	80.439	79.939	80.939	0								0	0	0	0.35985	1	20907	20907		10.183	0	1				51669	7806	29491	29492	63331	63331					0.026727411883712193
VFFVEFLT	8	Unmodified	_VFFVEFLT_					0	0	0		ENSG00000189181|ENST00000342623|OR14I1	ENSG00000189181|ENST00000342623|OR14I1	ENSG00000189181|ENST00000342623|OR14I1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2580871582031	2	501.270761	1000.52697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.471	1	81.447	80.947	81.947	-0.02404								0	0	0	0.35985	1	21205	21205		10.183	0.80027	1				51670	7806	29491	29492	63332	63332					0.026727411883712193
VFFVSKRH	8	Unmodified	_VFFVSKRH_					0	0	0			REV__nc|ENSG00000167716|Q562E7-2|WDR81	REV__nc|ENSG00000167716|Q562E7-2|WDR81	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.3056640625	2	510.292894	1018.57123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.74	1	115.74	115.24	116.24	0								0	0	0	0.37992	1	29984	29984		0.79363	0	1		+		51671	17407	29492	29493	63333	63333					0.06269190125237856
VFFVSKRH	8	Unmodified	_VFFVSKRH_					0	0	0			REV__nc|ENSG00000167716|Q562E7-2|WDR81	REV__nc|ENSG00000167716|Q562E7-2|WDR81	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.3056335449219	2	510.292894	1018.57123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.98	1	112.96	112.46	113.46	-0.017303								0	0	0	0.37992	1	29376	29376		0.79363	0	1		+		51672	17407	29492	29493	63334	63334					0.06269190125237856
VFFVSKRH	8	Unmodified	_VFFVSKRH_					0	0	0			REV__nc|ENSG00000167716|Q562E7-2|WDR81	REV__nc|ENSG00000167716|Q562E7-2|WDR81	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.3059387207031	2	510.292894	1018.57123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.59	1	115.57	115.07	116.07	-0.020988								0	0	0	0.37992	1	29973	29973		0.79363	0	1		+		51673	17407	29492	29493	63335	63335					0.06269190125237856
VFFVSKRH	8	Unmodified	_VFFVSKRH_					0	0	0			REV__nc|ENSG00000167716|Q562E7-2|WDR81	REV__nc|ENSG00000167716|Q562E7-2|WDR81	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.3056640625	2	510.292894	1018.57123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.44	1	116.42	115.92	116.92	-0.022781								0	0	0	0.37992	1	30166	30166		0.79363	0	1		+		51674	17407	29492	29493	63336	63336					0.06269190125237856
VFFVSKRH	8	Unmodified	_VFFVSKRH_					0	0	0			REV__nc|ENSG00000167716|Q562E7-2|WDR81	REV__nc|ENSG00000167716|Q562E7-2|WDR81	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.3062438964844	2	510.292894	1018.57123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.81	1	118.79	118.29	119.29	-0.024147								0	0	0	0.37992	1	30696	30696		0.79363	0	1		+		51675	17407	29492	29493	63337	63337					0.06269190125237856
VFFVSKRH	8	Unmodified	_VFFVSKRH_					0	0	0			REV__nc|ENSG00000167716|Q562E7-2|WDR81	REV__nc|ENSG00000167716|Q562E7-2|WDR81	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.30615234375	2	510.292894	1018.57123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.57	1	114.58	114.08	115.08	0.016708								0	0	0	0.37992	1	29792	29792		0.79363	0	1		+		51676	17407	29492	29493	63338	63338					0.06269190125237856
VFFVSKRH	8	Unmodified	_VFFVSKRH_					0	0	0			REV__nc|ENSG00000167716|Q562E7-2|WDR81	REV__nc|ENSG00000167716|Q562E7-2|WDR81	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.3055725097656	2	510.292894	1018.57123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.7	1	114.71	114.21	115.21	0.016708								0	0	0	0.37992	1	29823	29823		0.79363	0	1		+		51677	17407	29492	29493	63339	63339					0.06269190125237856
VFFVSKRH	8	Unmodified	_VFFVSKRH_					0	0	0			REV__nc|ENSG00000167716|Q562E7-2|WDR81	REV__nc|ENSG00000167716|Q562E7-2|WDR81	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.3061218261719	2	510.292894	1018.57123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.91	1	118.94	118.44	119.44	0.026253								0	0	0	0.37992	1	30777	30777		0.79363	0	1		+		51678	17407	29492	29493	63340	63340					0.06269190125237856
VFGALLFMTGI	11	Unmodified	_VFGALLFMTGI_					0	0	0			REV__ENSG00000177283|ENST00000374694|FZD8	REV__ENSG00000177283|ENST00000374694|FZD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3128662109375	2	584.825378	1167.6362	0.19365	0.00011325	-1.6195	-0.00094713	-1.4259	-0.00083388	584.8245591808065	23.907	0.35114	23.907	23.734	24.085	0					16	11	2	0	0	0	0.33255	1	3538	3538		2.9952	0	1	92484	+		51679	17979	29493	29494	63341	63341					0.059090038162139535
VFGALLFMTGI	11	Unmodified	_VFGALLFMTGI_					0	0	0			REV__ENSG00000177283|ENST00000374694|FZD8	REV__ENSG00000177283|ENST00000374694|FZD8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	584.825378	1167.6362	0.22192	0.00012978	-1.442	-0.00084329	-1.22	-0.00071351	584.8243295517965	24.09	0.35847	24.018	23.821	24.179	-0.072559	0.055417	0.000184	NaN	2.9952	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99299	+		51680	17979	29493	29494							0.059090038162139535
VFGCTLQVTQ	10	Unmodified	_VFGCTLQVTQ_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2698974609375	2	548.278792	1094.54303	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.433	1	50.433	49.933	50.933	0								0	0	0	0.28989	1	11696	11696		29.082	8.628	1				51681	6503	29494	29495	63342	63342					-0.00045920637035123946
VFGGSPLF	8	Unmodified	_VFGGSPLF_					0	0	0			REV__ENST00000564621.1_1_15:74754385-74771599:+|nuORF	REV__ENST00000564621.1_1_15:74754385-74771599:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2095031738281	2	412.221072	822.42759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.221	1	45.296	44.796	45.796	0.075047								0	0	0	0.3683	1	10079	10079		6.3541	0	1		+		51682	22343	29495	29496	63343	63343					0.009273432942904947
VFGIVESGVLV	11	Unmodified	_VFGIVESGVLV_					0	0	0		nc|ENSG00000290649|Q8NH63|OR51H1	nc|ENSG00000290649|Q8NH63|OR51H1	nc|ENSG00000290649|Q8NH63|OR51H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2921752929688	2	559.826432	1117.63831	0.035213	1.9713E-05	0.59163	0.00033121	0.62685	0.00035093	559.826422114264	61.327	0.70251	61.424	61.194	61.896	0.096985					45	25	2	0	0	0	0.3259	1	15001	15001		13.906	0	1	598770			51683	13010	29496	29497	63344	63344					0.08419755825661923
VFGKSAYLF	9	Unmodified	_VFGKSAYLF_					0	0	0		ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2816772460938	2	516.28166	1030.54877	0.29842	0.00015407	-0.033176	-1.7128E-05	0.26524	0.00013694	516.2814628136625	57.87	0.54121	57.956	57.738	58.279	0.085621					32	19	2	0	0	0	0.11201	1	14006	14006		36.506	10.165	1	692710			51684	5985	29497	29498	63345	63345					0.03471545936940856
VFGQPYTAVL	10	Unmodified	_VFGQPYTAVL_					0	0	0			REV__ENSG00000186526|ENST00000612078|CYP4F8	REV__ENSG00000186526|ENST00000612078|CYP4F8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7978515625	2	547.797675	1093.5808	0.51804	0.00028378	1.341	0.00073462	1.8591	0.0010184	547.797572998752	76.854	1.0833	76.854	76.283	77.366	0					94	39	5	0	0	0	0.19885	1	19809	19809		32.786	1.5173	1	1373400	+		51685	18452	29498	29499	63346	63346					0.03774913620077314
VFGQPYTAVL	10	Unmodified	_VFGQPYTAVL_					0	0	0			REV__ENSG00000186526|ENST00000612078|CYP4F8	REV__ENSG00000186526|ENST00000612078|CYP4F8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7979736328125	2	547.797675	1093.5808	0.7701	0.00042186	0.19199	0.00010517	0.9621	0.00052704	547.797470319828	76.954	1.0875	76.923	76.395	77.482	-0.031334					74	39	3	0	0	0	0.14021	1	19814	19814		39.95	7.164	1	1338300	+		51686	18452	29498	29499	63347	63347					0.03774913620077314
VFGWLPHL	8	Unmodified	_VFGWLPHL_					0	0	0			REV__nc|ENSG00000175785|Q86XR5-2|PRIMA1	REV__nc|ENSG00000175785|Q86XR5-2|PRIMA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.73992919921875	2	484.771263	967.527973	0.2346	0.00011373	-1.415	-0.00068595	-1.1804	-0.00057222	484.7698336163601	67.734	0.348	67.718	67.593	67.941	-0.016304					16	11	2	0	0	0	0.34297	1	16976	16976		6.3541	0	1	84960	+		51687	17909	29499	29500	63348	63348					0.04291000347939189
VFGYHGYTF	9	Unmodified	_VFGYHGYTF_					0	0	0		nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.7536010742188	2	545.753267	1089.49198	0.71134	0.00038822	0.18008	9.8277E-05	0.89142	0.0004865	545.7532500096354	59.201	0.78359	59.187	58.977	59.76	-0.014267					59	27	3	0	0	0	0.072564	1	14403	14403		42.095	42.095	1	1084800			51688	4433	29500	29501	63349	63349					-0.049185016195679054
VFGYHGYTF	9	Unmodified	_VFGYHGYTF_					0	0	0		nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	545.753267	1089.49198	0.39817	0.0002173	0.13636	7.442E-05	0.53453	0.00029172	545.7532687217837	59.147	0.83839	59.147	58.864	59.702	0	0.040652	1.3343E-05	NaN	67.344	64	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	739700			51689	4433	29500	29501							-0.049185016195679054
VFGYHGYTF	9	Unmodified	_VFGYHGYTF_					0	0	0		nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	545.753267	1089.49198	0.60925	0.0003325	0.02589	1.4129E-05	0.63514	0.00034663	545.75311146118	58.893	0.67001	58.984	58.764	59.434	0.091301	-0.12175	-0.00010724	NaN	67.344	59	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	757090			51690	4433	29500	29501							-0.049185016195679054
VFHPCKCLII	10	Unmodified	_VFHPCKCLII_					0	0	0			REV__ENST00000409609.5_1_2:189158809-189158926:+|nuORF	REV__ENST00000409609.5_1_2:189158809-189158926:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8342895507812	2	586.819573	1171.62459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.406	1	81.382	80.882	81.882	-0.02404								0	0	0	0.3664	1	21185	21185		7.9102	2.1783	1		+		51691	20764	29501	29502	63350	63350					0.045644835212215185
VFHPRQELI	9	Unmodified	_VFHPRQELI_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.8220825195312	2	569.822015	1137.62948	0.47276	0.00026939	-0.30604	-0.00017439	0.16672	9.5002E-05	569.8218435648546	37.721	0.64113	37.721	37.477	38.118	0					50	22	3	0	0	0	0.020233	1	7811	7811		63.961	41.224	1	576780			51692	3034	29502	29503	63351	63351					0.06616826979848156
VFHPRQELI	9	Unmodified	_VFHPRQELI_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.7656860351562	2	569.822015	1137.62948	0.42661	0.00024309	-0.1663	-9.4762E-05	0.26031	0.00014833	569.8219231674004	37.657	0.73953	37.747	37.36	38.1	0.089649					54	26	3	0	0	0	0.12329	1	7790	7790		49.554	26.818	1	629730			51693	3034	29502	29503	63352	63352					0.06616826979848156
VFHPRQELI	9	Unmodified	_VFHPRQELI_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.822021484375	2	569.822015	1137.62948	0.24657	0.0001405	-0.25686	-0.00014637	-0.010287	-5.8615E-06	569.8218353855493	37.574	0.55485	37.667	37.448	38.002	0.093018					45	20	3	0	0	0	0.058995	1	7759	7759		49.554	26.818	1	653960			51694	3034	29502	29503	63353	63353					0.06616826979848156
VFHPSQDLVF	10	Unmodified	_VFHPSQDLVF_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.806396484375	2	594.806031	1187.59751	0.36931	0.00021967	0.25713	0.00015294	0.62643	0.00037261	594.8061215988735	59.202	0.92965	59.202	58.968	59.897	0					78	32	4	0	0	0	0.22295	2	14406	14406;14454		29.841	5.82	1	1484400			51695	2298	29503	29504	63354;63355	63354					0.011214145060193914
VFHPSQDLVF	10	Unmodified	_VFHPSQDLVF_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7936401367188	2	594.806031	1187.59751	0.46716	0.00027787	0.24021	0.00014288	0.70737	0.00042075	594.806041198242	59.026	0.97506	59.118	58.849	59.824	0.091305					79	34	4	0	0	0	0.16839	2	14337	14337;14387		36.506	18.36	1	1343900			51696	2298	29503	29504	63356;63357	63356					0.011214145060193914
VFHSKLPVIE	10	Unmodified	_VFHSKLPVIE_					0	0	0			REV__ENST00000476846.1_7:111503332-111846439:-|nuORF	REV__ENST00000476846.1_7:111503332-111846439:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2886962890625	2	584.839874	1167.66519	0.35242	0.00020611	-0.74673	-0.00043672	-0.39432	-0.00023061	584.8395727379925	57.663	0.61153	57.663	57.435	58.046	0					29	21	2	0	0	0	0.30079	1	13916	13916		14.838	0	1	1268200	+		51697	21428	29504	29505	63358	63358					0.08806864436860451
VFHSKLPVIE	10	Unmodified	_VFHSKLPVIE_					0	0	0			REV__ENST00000476846.1_7:111503332-111846439:-|nuORF	REV__ENST00000476846.1_7:111503332-111846439:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.28857421875	2	584.839874	1167.66519	0.28653	0.00016757	-0.20149	-0.00011784	0.085043	4.9737E-05	584.8399701612292	57.433	0.5715	57.519	57.294	57.865	0.085621					37	20	3	0	0	0	0.31267	1	13860	13860		14.838	0	1	1248300	+		51698	21428	29504	29505	63359	63359					0.08806864436860451
VFHSSLQSI	9	Unmodified	_VFHSSLQSI_					0	0	0		nc|ENSG00000157326|Q9BTZ2-7|DHRS4	nc|ENSG00000157326|Q9BTZ2-7|DHRS4	nc|ENSG00000157326|Q9BTZ2-7|DHRS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8105773925781	2	509.271824	1016.5291	0.39458	0.00020095	-0.70358	-0.00035831	-0.309	-0.00015737	509.2722901772814	59.395	0.59808	59.381	58.889	59.488	-0.014267					36	20	2	0	0	0	0.2451	1	14341	14341		15.847	6.4997	1	152760			51699	12774	29505	29506	63360	63360					0.021491699262014663
VFHSSLQSI	9	Unmodified	_VFHSSLQSI_					0	0	0		nc|ENSG00000157326|Q9BTZ2-7|DHRS4	nc|ENSG00000157326|Q9BTZ2-7|DHRS4	nc|ENSG00000157326|Q9BTZ2-7|DHRS4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	509.271824	1016.5291	0.2432	0.00012386	0.95905	0.00048842	1.2023	0.00061228	509.2731602721897	59.16	0.47422	59.251	59.126	59.6	0.091301	-0.065003	0.00092282	NaN	15.847	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150510			51700	12774	29505	29506							0.021491699262014663
VFHTDVERWQW	11	Unmodified	_VFHTDVERWQW_					0	0	0		ENST00000512845.5_1_4:121737455-121843799:-|nuORF	ENST00000512845.5_1_4:121737455-121843799:-|nuORF	ENST00000512845.5_1_4:121737455-121843799:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.27471923828125	3	501.577359	1501.71025	0.13056	6.5486E-05	0.29399	0.00014746	0.42455	0.00021295	501.5774058514675	18.124	0.40305	18.066	17.768	18.171	-0.058174					31	14	3	0	0	0	0.33351	1	1759	1759		0.094841	0	1	57585			51701	11399	29506	29507	63361	63361					-0.020539367679248244
VFHVLLID	8	Unmodified	_VFHVLLID_					0	0	0		ENSG00000141756|ENST00000321562|FKBP10;ENST00000489591.5_1_17:39969413-39975983:+|nuORF	ENSG00000141756|ENST00000321562|FKBP10	ENSG00000141756|ENST00000321562|FKBP10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2640380859375	2	478.284203	954.553853	0.20379	9.7468E-05	0.50597	0.000242	0.70976	0.00033947	478.28450407609034	68.491	0.48204	68.491	68.226	68.708	0					27	17	2	0	0	0	0.34218	1	17194	17194		9.3474	0.75416	1	313540			51702	4411	29507	29508	63362	63362					0.07475849799584466
VFIAEVPII	9	Unmodified	_VFIAEVPII_					0	0	0		ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C;ENST00000564626.1_1_16:57496717-57497127:+|nuORF	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8073425292969	2	500.807511	999.600469	0.51521	0.00025802	-0.39428	-0.00019746	0.12093	6.0563E-05	500.80718629572505	87.884	0.56077	87.884	87.643	88.204	0					39	26	2	0	0	0	0.17787	1	23213	23213		26.884	9.9414	1	257900			51703	1798	29508	29509	63363	63363					0.10065289630870211
VFIAEVPII	9	Unmodified	_VFIAEVPII_					0	0	0		ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C;ENST00000564626.1_1_16:57496717-57497127:+|nuORF	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.80694580078125	2	500.807511	999.600469	0.41679	0.00020873	-1.2631	-0.00063256	-0.8463	-0.00042383	500.8071835013478	87.728	0.69085	87.816	87.553	88.244	0.08709					55	38	2	0	0	0	0.1669	1	23156	23156		28.487	11.545	1	255110			51704	1798	29508	29509	63364	63364					0.10065289630870211
VFIAEVPII	9	Unmodified	_VFIAEVPII_					0	0	0		ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C;ENST00000564626.1_1_16:57496717-57497127:+|nuORF	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	ENST00000567982.5_1_16:57496627-57503684:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8072509765625	2	500.807511	999.600469	0.43198	0.00021634	-0.63564	-0.00031833	-0.20366	-0.00010199	500.8071957171811	87.862	0.55632	87.859	87.619	88.176	-0.0028381					46	29	2	0	0	0	0.24581	1	23197	23197		16.942	9.0321	1	250010			51705	1798	29508	29509	63365	63365					0.10065289630870211
VFIAQGYTL	9	Unmodified	_VFIAQGYTL_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3;TMTC3|p.N621Sfs*8|1|0.03|ENSG00000139324|chr12:88192757-88192758|-/TCGAA|frameshift_variant;TMTC3|p.S557Tfs*2|1|0.32|ENSG00000139324|chr12:88190586-88190586|G/-|frameshift_variant	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.8416442871094	2	506.279118	1010.54368	0.26006	0.00013166	-1.0349	-0.00052393	-0.7748	-0.00039226	506.2784984611066	68.462	0.93726	68.533	68.163	69.1	0.071938					45	34	2	0	0	0	0.057684	1	17280	17280		58.679	40.544	1	347220			51706	4229	29509	29510	63366	63366					0.03883242074334703
VFIAQGYTL	9	Unmodified	_VFIAQGYTL_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3;TMTC3|p.N621Sfs*8|1|0.03|ENSG00000139324|chr12:88192757-88192758|-/TCGAA|frameshift_variant;TMTC3|p.S557Tfs*2|1|0.32|ENSG00000139324|chr12:88190586-88190586|G/-|frameshift_variant	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.26300048828125	2	506.279118	1010.54368	0.35765	0.00018107	-0.83048	-0.00042045	-0.47283	-0.00023938	506.27895911538087	68.55	0.95772	68.531	68.284	69.242	-0.01915					49	32	2	0	0	0	0.057976	1	17243	17243		49.933	24.534	1	316060			51707	4229	29509	29510	63367	63367					0.03883242074334703
VFIDKQTNL	9	Unmodified	_VFIDKQTNL_					0	0	0		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.30078125	2	539.300581	1076.58661	0.2476	0.00013353	0.52923	0.00028542	0.77683	0.00041895	539.3006614024982	42.599	1.2174	42.599	42.277	43.494	0					97	44	5	0	0	0	0.00078391	2	9274	9274;9325		125.53	65.856	1	5590200			51708	645	29510	29511	63368;63369	63368					0.05138012131760661
VFIDKQTNL	9	Unmodified	_VFIDKQTNL_					0	0	0		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.30078125	2	539.300581	1076.58661	0.362	0.00019523	0.49186	0.00026526	0.85386	0.00046049	539.3005616449625	42.44	1.0688	42.526	42.121	43.19	0.085197					100	38	4	0	0	0	0.0016712	2	9206	9206;9254		114.2	65.856	1	5874800			51709	645	29510	29511	63370;63371	63370					0.05138012131760661
VFIDKQTNL	9	Unmodified	_VFIDKQTNL_					0	0	0		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.30078125	2	539.300581	1076.58661	0.5138	0.00027709	0.51368	0.00027703	1.0275	0.00055412	539.3004955436875	42.345	1.3504	42.437	42.067	43.417	0.091362					106	48	4	0	0	0	0.0016712	2	9185	9185;9234		114.2	65.856	1	5588200			51710	645	29510	29511	63372;63373	63372					0.05138012131760661
VFIELLLIH	9	Unmodified	_VFIELLLIH_					0	0	0			REV__ENSG00000137462|ENST00000642700|TLR2	REV__ENSG00000137462|ENST00000642700|TLR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7872924804688	2	548.841885	1095.66922	0.62275	0.00034179	0.65222	0.00035797	1.275	0.00069976	548.8422415449344	72.529	0.38023	72.583	72.434	72.814	0.053833					22	13	2	0	0	0	0.20279	1	18454	18454		26.341	11.936	1	131180	+		51711	15860	29511	29512	63374	63374					0.12520953930561518
VFIENAPIQ	9	Unmodified	_VFIENAPIQ_					0	0	0			REV__ENSG00000082497|ENST00000367012|SERTAD4	REV__ENSG00000082497|ENST00000367012|SERTAD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.8001098632812	2	515.782025	1029.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.702	1	57.788	57.288	58.288	0.085621								0	0	0	0.17427	1	13939	13939		29.082	0	1		+		51712	13922	29512	29513	63375	63375					0.035903405860153725
VFIEQPTPF	9	Unmodified	_VFIEQPTPF_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	nc|ENSG00000152952|O00469|PLOD2;ENSG00000083444|ENST00000196061|PLOD1	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7852172851562	2	539.2844	1076.55425	0.47416	0.00025571	0.61359	0.0003309	1.0877	0.0005866	539.2847153923814	70.119	0.70998	70.119	69.895	70.605	0					37	25	2	0	0	0	0.11397	1	17743	17743		49.933	32.991	1	382930			51713	5048;1220	29513	29514	63376	63376					0.01903224728744135
VFIEQPTPF	9	Unmodified	_VFIEQPTPF_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	nc|ENSG00000152952|O00469|PLOD2;ENSG00000083444|ENST00000196061|PLOD1	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2843017578125	2	539.2844	1076.55425	0.4062	0.00021906	1.2594	0.00067917	1.6656	0.00089822	539.2852323260693	70.024	1.0779	70.091	69.856	70.934	0.06604					48	38	2	0	0	0	0.082647	1	17769	17769		53.404	35.258	1	300270			51714	5048;1220	29513	29514	63377	63377					0.01903224728744135
VFIEQPTPF	9	Unmodified	_VFIEQPTPF_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	nc|ENSG00000152952|O00469|PLOD2;ENSG00000083444|ENST00000196061|PLOD1	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.2843627929688	2	539.2844	1076.55425	0.53864	0.00029048	0.86979	0.00046907	1.4084	0.00075955	539.2848507387729	70.133	0.66585	70.111	69.886	70.552	-0.022087					53	23	3	0	0	0	0.10058	1	17781	17781		45.7	26.443	1	318940			51715	5048;1220	29513	29514	63378	63378					0.01903224728744135
VFIFKGNQF	9	Unmodified	_VFIFKGNQF_					0	0	0		ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.31298828125	2	550.300384	1098.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.511	1	76.511	76.011	77.011	0								0	0	0	0.20238	1	19706	19706		21.747	3.6003	1				51716	4900	29514	29515	63379	63379					0.040866372025675446
VFIGNLNTL	9	Unmodified	_VFIGNLNTL_					0	0	0		ENST00000556181.1_1_14:58987979-58988105:+|nuORF;HNRNPCL2|p.I183Nfs*2|1|0.21|ENSG00000275774|chr1:13115853-13115854|-/T|frameshift_variant;nc|ENSG00000092199|P07910-3|HNRNPC;HNRNPC|p.D258Rfs*2|1|0.38|ENSG00000092199|chr14:21211471-21211472|-/T|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC	ENST00000556181.1_1_14:58987979-58988105:+|nuORF	ENST00000556181.1_1_14:58987979-58988105:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7856750488281	2	495.784567	989.554582	0.4596	0.00022786	0.13852	6.8675E-05	0.59812	0.00029654	495.7846505363017	71.541	0.61872	71.541	71.292	71.911	0					36	21	2	0	0	0	0.0018995	1	18186	18186		111.29	46.052	1	481460			51717	1421	29515	29516	63380	63380					0.05938644448622199
VFIGNLNTL	9	Unmodified	_VFIGNLNTL_					0	0	0		ENST00000556181.1_1_14:58987979-58988105:+|nuORF;HNRNPCL2|p.I183Nfs*2|1|0.21|ENSG00000275774|chr1:13115853-13115854|-/T|frameshift_variant;nc|ENSG00000092199|P07910-3|HNRNPC;HNRNPC|p.D258Rfs*2|1|0.38|ENSG00000092199|chr14:21211471-21211472|-/T|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC	ENST00000556181.1_1_14:58987979-58988105:+|nuORF	ENST00000556181.1_1_14:58987979-58988105:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.78485107421875	2	495.784567	989.554582	0.40671	0.00020164	0.26313	0.00013046	0.66983	0.00033209	495.7848020232835	71.475	0.85074	71.531	71.293	72.144	0.05658					36	30	2	0	0	0	0.0018995	1	18165	18165		111.29	46.052	1	562160			51718	1421	29515	29516	63381	63381					0.05938644448622199
VFIGNLNTL	9	Unmodified	_VFIGNLNTL_					0	0	0		ENST00000556181.1_1_14:58987979-58988105:+|nuORF;HNRNPCL2|p.I183Nfs*2|1|0.21|ENSG00000275774|chr1:13115853-13115854|-/T|frameshift_variant;nc|ENSG00000092199|P07910-3|HNRNPC;HNRNPC|p.D258Rfs*2|1|0.38|ENSG00000092199|chr14:21211471-21211472|-/T|frameshift_variant;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC	ENST00000556181.1_1_14:58987979-58988105:+|nuORF	ENST00000556181.1_1_14:58987979-58988105:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7842102050781	2	495.784567	989.554582	0.45661	0.00022638	0.32255	0.00015992	0.77917	0.0003863	495.7846013372898	71.528	0.72096	71.501	71.288	72.009	-0.027275					31	25	2	0	0	0	0.0033114	1	18199	18199		99.799	43.622	1	541460			51719	1421	29515	29516	63382	63382					0.05938644448622199
VFIGTGHLL	9	Unmodified	_VFIGTGHLL_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7818908691406	2	478.781828	955.549102	0.25226	0.00012078	0.62713	0.00030026	0.87938	0.00042103	478.7818058610659	57.475	1.7755	57.475	57.116	58.891	0					151	62	5	0	0	0	4.6753E-07	3	13867	13814;13867;14033		161.89	72.468	1	6127300			51720	7784;12506	29516	29517	63383;63384;63385	63384					0.06954965656814238
VFIGTGHLL	9	Unmodified	_VFIGTGHLL_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7820739746094	2	478.781828	955.549102	0.26819	0.0001284	0.57988	0.00027764	0.84807	0.00040604	478.78179147873334	57.352	1.7946	57.437	57.075	58.87	0.085621					160	64	4	0	0	0	4.6753E-07	6	13826	13775;13826;13868;13890;13965;14023		161.89	72.468	1	6994100			51721	7784;12506	29516	29517	63386;63387;63388;63389;63390;63391	63387					0.06954965656814238
VFIGTGHLL	9	Unmodified	_VFIGTGHLL_					0	0	0		ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2;LRRK2|p.I1533Sfs*15|1|0.16|ENSG00000188906|chr12:40314027-40314027|A/-|frameshift_variant	ENSG00000188906|ENST00000298910|LRRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7819519042969	2	478.781828	955.549102	0.13921	6.6653E-05	0.77972	0.00037331	0.91893	0.00043997	478.7818409444972	57.522	1.5089	57.505	57.144	58.653	-0.0172					150	55	5	0	0	0	2.3185E-05	3	13866	13823;13866;13909		153.26	71.398	1	6514000			51722	7784;12506	29516	29517	63392;63393;63394	63393					0.06954965656814238
VFIHDQKLF	9	Unmodified	_VFIHDQKLF_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.778564453125	2	573.818941	1145.62333	0.45731	0.00026241	0.067523	3.8746E-05	0.52483	0.00030116	573.8188791110616	48.182	0.65263	48.182	48.012	48.665	0					41	22	2	0	0	0	0.1303	1	11091	11091		49.527	21.898	1	699310			51723	8655	29517	29518	63395	63395					0.05634308748312833
VFIHDQKLF	9	Unmodified	_VFIHDQKLF_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.7784423828125	2	573.818941	1145.62333	0.73745	0.00042316	-0.37057	-0.00021264	0.36688	0.00021053	573.8185755305751	48.113	0.77688	48.161	47.968	48.745	0.04752					61	28	3	0	0	0	0.0090577	1	11051	11051		89.401	45.542	1	610190			51724	8655	29517	29518	63396	63396					0.05634308748312833
VFIHDQKLF	9	Unmodified	_VFIHDQKLF_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	573.818941	1145.62333	0.47645	0.0002734	0.14961	8.585E-05	0.62606	0.00035925	573.8188864941943	48.124	0.65652	48.168	47.987	48.643	0.043324	-0.0023708	0.00024958	NaN	79.596	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	798400			51725	8655	29517	29518							0.05634308748312833
VFIKLIQCFK	10	Unmodified	_VFIKLIQCFK_					0	0	0			REV__ENST00000480931.1_1_3:128580492-128584319:-|nuORF	REV__ENST00000480931.1_1_3:128580492-128584319:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8687133789062	2	619.87012	1237.72569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.67	1	114.67	114.17	115.17	0								0	0	0	0.38126	1	29741	29741		1.6526	0	1		+		51726	21481	29518	29519	63397	63397					0.11633258495567134
VFIPQRSLV	9	Unmodified	_VFIPQRSLV_					0	0	0		ENST00000462139.1_1_1:247462914-247463100:-|nuORF	ENST00000462139.1_1_1:247462914-247463100:-|nuORF	ENST00000462139.1_1_1:247462914-247463100:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7510986328125	2	529.821484	1057.62842	0.80689	0.00042751	-0.006646	-3.5212E-06	0.80025	0.00042399	529.821109390111	55.031	0.64149	55.015	54.796	55.437	-0.015919					42	23	3	0	0	0	0.25811	1	13197	13197		5.2307	0	1	1155300			51727	10754	29519	29520	63398	63398					0.10190612610927019
VFIRGGEEF	9	Unmodified	_VFIRGGEEF_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2722778320312	2	527.271824	1052.5291	0.34779	0.00018338	-0.31478	-0.00016598	0.033001	1.7401E-05	527.2716506541977	46.209	1.0501	46.209	45.974	47.024	0					58	37	2	0	0	0	0.0063009	1	10370	10370		99.755	55.897	1	2175000			51728	6752	29520	29521	63399	63399					0.0049316992619878874
VFIRGGEEF	9	Unmodified	_VFIRGGEEF_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.271728515625	2	527.271824	1052.5291	0.19389	0.00010223	0.067171	3.5418E-05	0.26106	0.00013765	527.2717796793994	45.97	0.7983	46.03	45.763	46.562	0.059837					50	28	2	0	0	0	0.0028626	2	10351	10300;10351		103.35	71.048	1	2041300			51729	6752	29520	29521	63400;63401	63401					0.0049316992619878874
VFIRGGEEF	9	Unmodified	_VFIRGGEEF_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2720947265625	2	527.271824	1052.5291	0.57241	0.00030181	-0.39852	-0.00021013	0.17389	9.1687E-05	527.2715853290591	45.974	0.99708	46.039	45.782	46.779	0.065048					57	35	2	0	0	0	0.0010463	2	10335	10284;10335		122.18	84.205	1	1989600			51730	6752	29520	29521	63402;63403	63403					0.0049316992619878874
VFISSSLNTF	10	Unmodified	_VFISSSLNTF_					0	0	0		ENST00000481742.1_1_19:36606435-36607215:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3630981445312	2	557.792589	1113.57063	0.36816	0.00020535	0.18206	0.00010155	0.55022	0.00030691	557.7924493496474	71.801	1.0628	71.801	71.55	72.613	0					77	38	3	0	0	0	4.6363E-10	1	18284	18284		171.46	106.23	1	1195500			51731	1959	29521	29522	63404	63404					0.01838305894852965
VFISSSLNTF	10	Unmodified	_VFISSSLNTF_					0	0	0		ENST00000481742.1_1_19:36606435-36607215:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3629760742188	2	557.792589	1113.57063	0.38543	0.00021499	0.2889	0.00016114	0.67432	0.00037613	557.792668064467	71.747	1.1729	71.803	71.459	72.632	0.05658					80	42	3	0	0	0	4.6363E-10	1	18273	18273		184.36	109.43	1	1257800			51732	1959	29521	29522	63405	63405					0.01838305894852965
VFISSSLNTF	10	Unmodified	_VFISSSLNTF_					0	0	0		ENST00000481742.1_1_19:36606435-36607215:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3632202148438	2	557.792589	1113.57063	0.34702	0.00019357	0.69689	0.00038872	1.0439	0.00058228	557.7928452460083	71.859	1.2871	71.832	71.341	72.629	-0.027275					100	45	4	0	0	0	4.6363E-10	1	18250	18250		171.46	105.01	1	1378600			51733	1959	29521	29522	63406	63406					0.01838305894852965
VFKDTMEGF	9	Unmodified	_VFKDTMEGF_					0	0	0			REV__ABCB4|p.F739Hfs*12|1|0.05|ENSG00000005471|chr7:87422222-87422223|-/TTCTTACAGTG|frameshift_variant	REV__ABCB4|p.F739Hfs*12|1|0.05|ENSG00000005471|chr7:87422222-87422223|-/TTCTTACAGTG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2693481445312	2	537.252243	1072.48993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.035	1	51.035	50.535	51.535	0								0	0	0	0.24077	1	11879	11879		9.3474	0.75416	1		+		51734	13064	29522	29523	63407	63407					-0.043412984196947946
VFKHAYLVE	9	Unmodified	_VFKHAYLVE_					0	0	0			REV__nc|ENSG00000188827|Q8IY92-2|SLX4	REV__nc|ENSG00000188827|Q8IY92-2|SLX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3193969726562	2	553.305667	1104.59678	0.39455	0.00021831	-2.4342	-0.0013468	-2.0396	-0.0011285	553.3039701894704	46.984	0.99701	47.037	46.629	47.626	0.052574					72	36	3	0	0	0	0.16283	1	10623	10623		29.082	8.628	1	1251600	+		51735	18575	29523	29524	63408	63408					0.048666198569890184
VFKIFWHC	8	Unmodified	_VFKIFWHC_					0	0	0			REV__ENST00000451333.1_1_2:71037932-71038202:-|nuORF	REV__ENST00000451333.1_1_2:71037932-71038202:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7987060546875	2	540.278398	1078.54224	0.82917	0.00044798	4.415	0.0023853	5.2442	0.0028333	540.2815123546042	45.856	0.44546	45.856	45.64	46.085	0					21	15	2	0	0	0	0.34185	1	10275	10275		10.183	0.10947	1	147780	+		51736	21117	29524	29525	63409	63409					0.0061132950459068525
VFKPIVEKFGF	11	Unmodified	_VFKPIVEKFGF_					0	0	0		ENSG00000137996|ENST00000370128|RTCA;nc|ENSG00000137996|O00442-2|RTCA	ENSG00000137996|ENST00000370128|RTCA	ENSG00000137996|ENST00000370128|RTCA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.24530029296875	3	437.588425	1309.74344	0.28718	0.00012567	-0.042027	-1.8391E-05	0.24515	0.00010728	437.58830460356506	51.072	0.4043	51.072	50.818	51.222	0					26	14	2	0	0	0	0.33236	1	11818	11818		4.4062	4.4062	1	277350			51737	4103	29525	29526	63410	63410					0.10096297022073486
VFKPIVEKFGF	11	Unmodified	_VFKPIVEKFGF_					0	0	0		ENSG00000137996|ENST00000370128|RTCA;nc|ENSG00000137996|O00442-2|RTCA	ENSG00000137996|ENST00000370128|RTCA	ENSG00000137996|ENST00000370128|RTCA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.2453308105469	3	437.588425	1309.74344	0.19183	8.3943E-05	-0.71464	-0.00031272	-0.52281	-0.00022878	437.5882382037421	51.167	0.48889	51.177	50.913	51.402	0.0095634					36	18	3	0	0	0	0.33236	1	11840	11840		4.4062	3.0765	1	271770			51738	4103	29525	29526	63411	63411					0.10096297022073486
VFKRKFHYF	9	Unmodified	_VFKRKFHYF_					0	0	0		ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22311488-22316996:-|nuORF	ENST00000444502.5_1_22:22313806-22324763:-|nuORF	ENST00000444502.5_1_22:22313806-22324763:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.56298828125	3	424.573109	1270.6975	-0.20199	-8.5758E-05	-0.47536	-0.00020183	-0.67735	-0.00028758	424.5728803574854	31.562	0.64482	31.604	31.296	31.941	0.042366					27	22	2	0	0	0	0.2524	1	5966	5966		7.609	5.1105	1	393530			51739	1524	29526	29527	63412	63412					0.07297696630507744
VFKRKFHYF	9	Unmodified	_VFKRKFHYF_					0	0	0		ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22311488-22316996:-|nuORF	ENST00000444502.5_1_22:22313806-22324763:-|nuORF	ENST00000444502.5_1_22:22313806-22324763:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	424.573109	1270.6975	-0.24573	-0.00010433	0.067803	2.8787E-05	-0.17792	-7.5542E-05	424.5731911195698	31.499	0.46473	31.499	31.202	31.667	0	-0.039294	0.00032823	NaN	7.609	46	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327620			51740	1524	29526	29527							0.07297696630507744
VFKRKFHYF	9	Unmodified	_VFKRKFHYF_					0	0	0		ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22311488-22316996:-|nuORF	ENST00000444502.5_1_22:22313806-22324763:-|nuORF	ENST00000444502.5_1_22:22313806-22324763:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	424.573109	1270.6975	-0.047126	-2.0009E-05	-0.18872	-8.0127E-05	-0.23585	-0.00010014	424.5730669068124	31.47	0.49312	31.511	31.255	31.748	0.040991	-0.026814	1.4868E-06	NaN	7.609	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365900			51741	1524	29526	29527							0.07297696630507744
VFKSKNKI	8	Unmodified	_VFKSKNKI_					0	0	0		nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;ENSG00000134779|ENST00000334295|TPGS2	nc|ENSG00000134779|Q68CL5-1|TPGS2	nc|ENSG00000134779|Q68CL5-1|TPGS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.29681396484375	2	482.302927	962.591301	0.61767	0.0002979	0.1436	6.9261E-05	0.76127	0.00036716	482.3029465235265	50.816	0.65352	50.816	50.544	51.198	0					69	23	4	0	0	0	0.25582	1	11913	11913		49.933	11.959	1	2117800			51742	3813	29527	29528	63413	63413					0.10850941065177722
VFKSKNKI	8	Unmodified	_VFKSKNKI_					0	0	0		nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;ENSG00000134779|ENST00000334295|TPGS2	nc|ENSG00000134779|Q68CL5-1|TPGS2	nc|ENSG00000134779|Q68CL5-1|TPGS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.30364990234375	2	482.302927	962.591301	0.57685	0.00027822	0.22328	0.00010769	0.80013	0.0003859	482.30291329079876	50.791	0.56708	50.837	50.551	51.118	0.046574					64	20	4	0	0	0	0.18275	1	11868	11868		46.021	7.8454	1	2507500			51743	3813	29527	29528	63414	63414					0.10850941065177722
VFKTTLNEF	9	Unmodified	_VFKTTLNEF_					0	0	0		ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.238037109375	2	549.795132	1097.57571	0.34478	0.00018956	1.6313	0.00089691	1.9761	0.0010865	549.796035369496	55.537	0.17611	55.537	55.482	55.658	0					8	5	2	0	0	0	0.24739	1	13279	13279		13.508	0	1	100700			51744	1720	29528	29529	63415	63415					0.03082609757461796
VFKTTLNEF	9	Unmodified	_VFKTTLNEF_					0	0	0		ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2854614257812	2	549.795132	1097.57571	0.61996	0.00034085	2.0722	0.0011393	2.6922	0.0014802	549.7963297753173	50.995	0.37133	51.042	50.9	51.271	0.046574					29	13	3	0	0	0	0.1303	1	11846	11846		49.527	22.644	1	499030			51745	1720	29528	29529	63416	63416					0.03082609757461796
VFKVTIMF	8	Unmodified	_VFKVTIMF_					0	0	0			REV__ENST00000591563.5_1_17:73828844-73835996:-|nuORF	REV__ENST00000591563.5_1_17:73828844-73835996:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.7825927734375	2	492.782982	983.55141	6.1147E-05	3.0132E-08	-0.023371	-1.1517E-05	-0.02331	-1.1487E-05	492.78295695721886	14.119	0.45632	14.053	13.917	14.373	-0.066068					28	15	2	0	0	0	0.46491	1	713	713		0.69038	0	1	149250	+		51746	14087	29529	29530	63417	63417					0.058976780702664655
VFLCIHIVLR	10	Unmodified	_VFLCIHIVLR_					0	0	0		nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52;ENST00000493379.1_1_6:33232539-33235000:-|nuORF	nc|ENSG00000223501|Q8N1B4-2|VPS52	nc|ENSG00000223501|Q8N1B4-2|VPS52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.57025146484375	3	404.914366	1211.72127	-0.42072	-0.00017036	3.7987	0.0015381	3.378	0.0013678	404.916013687085	12.4	0.50834	12.304	12.072	12.58	-0.096607					21	17	2	0	0	0	0.32165	1	190	190		0.69767	0	1	18868			51747	8435	29530	29531	63418	63418					0.12387794072651559
VFLEFWKRRR	10	Unmodified	_VFLEFWKRRR_					0	0	0		nc|ENSG00000151572|Q32M45-3|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4;ENSG00000151572|ENST00000392977|ANO4;chr12:100740105-100901646|299|10.57|0.2|5.71|+|ENST00000644049|ANO4,ANO4;chr12:100733857-100739854|321|10.37|0.22|5.55|+|ENST00000644049|ANO4,ANO4;nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3	nc|ENSG00000151572|Q32M45-3|ANO4;nc|ENSG00000134343|Q9BYT9-2|ANO3	nc|ENSG00000151572|Q32M45-3|ANO4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.61370849609375	3	479.613967	1435.82007	0.28571	0.00013703	-0.83973	-0.00040275	-0.55402	-0.00026572	479.6136039565623	58.24	0.5401	58.325	58.162	58.702	0.085621					28	18	2	0	0	0	0.3994	1	14118	14118		3.5871	0.74377	1	547020			51748	129;3777	29531	29532	63419	63419					0.1195953336191451
VFLFSKLMVW	10	Unmodified	_VFLFSKLMVW_					0	0	0		HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|261|1|anti-sense;HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|259|1|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|261|1|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|261|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2062072753906	3	423.906989	1268.69914	-1.519	-0.00064393	-0.31196	-0.00013224	-1.831	-0.00077617	423.90699278284154	34.9	0.61771	34.9	34.5	35.118	0					34	21	3	0	0	0	0.3213	1	6952	6952		1.9064	0.1641	1	190550			51749	12410	29532	29533	63420	63420					0.07553569604260701
VFLIGNVMV	9	Unmodified	_VFLIGNVMV_					0	0	0			REV__ENSG00000168961|ENST00000395473|LGALS9	REV__ENSG00000168961|ENST00000395473|LGALS9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3041687011719	2	496.285889	990.557224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.652	1	71.709	71.209	72.209	0.056572								0	0	0	0.22789	1	18218	18218		13.508	0	1		+		51750	17492	29533	29534	63421	63421					0.0615677658192908
VFLKAGASF	9	Unmodified	_VFLKAGASF_					0	0	0		ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.2686462402344	2	470.268553	938.522553	0.15992	7.5205E-05	0.2489	0.00011705	0.40882	0.00019225	470.26857124436424	48.874	1.3173	48.874	48.636	49.953	0					107	47	3	0	0	0	0.00045155	2	11191	11191;11237		129.77	68.415	1	4377900			51751	9771	29534	29535	63422;63423	63422					0.05083276765469691
VFLKAGASF	9	Unmodified	_VFLKAGASF_					0	0	0		ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.2686767578125	2	470.268553	938.522553	0.20365	9.5768E-05	-0.96228	-0.00045253	-0.75864	-0.00035676	470.2685323883375	48.913	1.378	48.958	48.629	50.007	0.044888					130	50	5	0	0	0	0.00045155	3	11202	11202;11252;11375		129.77	68.415	1	3629000			51752	9771	29534	29535	63424;63425;63426	63424					0.05083276765469691
VFLKAGASF	9	Unmodified	_VFLKAGASF_					0	0	0		ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2686462402344	2	470.268553	938.522553	0.13286	6.2478E-05	-0.51219	-0.00024087	-0.37933	-0.00017839	470.2685827274103	48.829	1.4241	48.861	48.576	50	0.032043					129	51	4	0	0	0	9.2305E-05	2	11181	11181;11228		142.08	80.722	1	3853900			51753	9771	29534	29535	63427;63428	63427					0.05083276765469691
VFLLQPYSQ	9	Unmodified	_VFLLQPYSQ_					0	0	0		ENST00000463038.1_1_3:132241830-132242644:+|nuORF	ENST00000463038.1_1_3:132241830-132242644:+|nuORF	ENST00000463038.1_1_3:132241830-132242644:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3460693359375	2	547.797675	1093.5808	0.75878	0.00041566	-2.7374	-0.0014995	-1.9786	-0.0010839	547.7976883540549	84.625	0.48218	84.706	84.472	84.954	0.080887					36	18	3	0	0	0	0.23784	1	22251	22251		19.257	3.4098	1	88487			51754	10760	29535	29536	63429	63429					0.03774913620077314
VFLLSQHL	8	Unmodified	_VFLLSQHL_					0	0	0		ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.33099365234375	2	478.781828	955.549102	-0.062407	-2.9879E-05	1.2018	0.00057542	1.1394	0.00054554	478.78214837494284	59.759	0.25868	59.759	59.56	59.819	0					9	8	2	0	0	0	0.3366	1	14573	14573		18.135	0	1	83849			51755	6857	29536	29537	63430	63430					0.06954965656814238
VFLLSQHL	8	Unmodified	_VFLLSQHL_					0	0	0		ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	478.781828	955.549102	0.050973	2.4405E-05	-2.4642	-0.0011798	-2.4132	-0.0011554	478.7819217420645	59.606	0.16339	59.702	59.578	59.741	0.095093	-0.028691	-0.0031938	NaN	18.135	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113140			51756	6857	29536	29537							0.06954965656814238
VFLMLDLVI	9	Unmodified	_VFLMLDLVI_					0	0	0			REV__ENST00000490674.1_1_2:113416436-113416796:+|nuORF	REV__ENST00000490674.1_1_2:113416436-113416796:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.817138671875	2	531.817021	1061.61949	0.47258	0.00025133	0.001627	8.6526E-07	0.47421	0.00025219	531.8168777030975	80.84	0.58231	80.84	80.54	81.123	0					75	27	3	0	0	0	0.32733	1	21097	21097		4.756	4.756	1	953740	+		51757	21604	29537	29538	63431	63431					0.09114502930242452
VFLMLDLVI	9	Unmodified	_VFLMLDLVI_					0	0	0			REV__ENST00000490674.1_1_2:113416436-113416796:+|nuORF	REV__ENST00000490674.1_1_2:113416436-113416796:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8171997070312	2	531.817021	1061.61949	0.17826	9.4804E-05	0.32196	0.00017123	0.50023	0.00026603	531.817060472402	80.778	0.61263	80.843	80.52	81.133	0.065094					65	25	3	0	0	0	0.32733	1	21070	21070		4.756	4.756	1	963810	+		51758	21604	29537	29538	63432	63432					0.09114502930242452
VFLMLDLVI	9	Unmodified	_VFLMLDLVI_					0	0	0			REV__ENST00000490674.1_1_2:113416436-113416796:+|nuORF	REV__ENST00000490674.1_1_2:113416436-113416796:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	531.817021	1061.61949	0.48018	0.00025537	-0.03823	-2.0331E-05	0.44195	0.00023503	531.8168785458518	80.851	0.62946	80.824	80.573	81.202	-0.026817	-0.011199	-0.0001216	NaN	4.756	67	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1209900	+		51759	21604	29537	29538							0.09114502930242452
VFLNRAKAVFF	11	Unmodified	_VFLNRAKAVFF_					0	0	0		ENST00000478451.1_1_7:23312974-23313840:+|nuORF;ENST00000463011.5_1_7:23312740-23313840:+|nuORF;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	ENST00000478451.1_1_7:23312974-23313840:+|nuORF	ENST00000478451.1_1_7:23312974-23313840:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.923828125	3	437.923919	1310.74993	0.058251	2.551E-05	-0.38815	-0.00016998	-0.3299	-0.00014447	437.92376290899927	57.146	0.44695	57.225	56.983	57.43	0.078674					43	15	4	0	0	0	0.20863	1	13763	13763		30.431	18.257	1	532840			51760	3955	29538	29539	63433	63433					0.10698234973438048
VFLNRAKAVFF	11	Unmodified	_VFLNRAKAVFF_					0	0	0		ENST00000478451.1_1_7:23312974-23313840:+|nuORF;ENST00000463011.5_1_7:23312740-23313840:+|nuORF;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	ENST00000478451.1_1_7:23312974-23313840:+|nuORF	ENST00000478451.1_1_7:23312974-23313840:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	437.923919	1310.74993	0.16383	7.1744E-05	-0.25661	-0.00011238	-0.092786	-4.0633E-05	437.92374357642694	57.265	0.48686	57.265	57.038	57.525	0	-0.034041	2.1297E-05	NaN	30.431	46	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378550			51761	3955	29538	29539							0.10698234973438048
VFLNRAKAVFF	11	Unmodified	_VFLNRAKAVFF_					0	0	0		ENST00000478451.1_1_7:23312974-23313840:+|nuORF;ENST00000463011.5_1_7:23312740-23313840:+|nuORF;ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	ENST00000478451.1_1_7:23312974-23313840:+|nuORF	ENST00000478451.1_1_7:23312974-23313840:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	437.923919	1310.74993	-0.096411	-4.2221E-05	-0.11111	-4.8656E-05	-0.20752	-9.0877E-05	437.92384638221597	57.425	0.62301	57.408	57.144	57.767	-0.0172	0.10862	0.00021246	NaN	30.431	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431610			51762	3955	29538	29539							0.10698234973438048
VFLPDNGAFF	10	Unmodified	_VFLPDNGAFF_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B;ENSG00000165548|ENST00000298351|TMEM63C	nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000165548|ENST00000298351|TMEM63C	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.781982421875	2	563.782025	1125.5495	0.49116	0.00027691	-0.33016	-0.00018614	0.161	9.077E-05	563.7819461294072	84.995	1.0425	84.995	84.72	85.763	0					89	40	3	0	0	0	0.0047411	2	22291	22291;22340		93.166	57.039	1	1243600			51763	4035;5976	29539	29540	63434;63435	63434					-0.008256594139993467
VFLPDNGAFF	10	Unmodified	_VFLPDNGAFF_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B;ENSG00000165548|ENST00000298351|TMEM63C	nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000165548|ENST00000298351|TMEM63C	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.7819213867188	2	563.782025	1125.5495	0.58771	0.00033134	-0.52253	-0.00029459	0.065185	3.675E-05	563.7818754255338	84.866	1.0225	84.947	84.7	85.722	0.080879					98	39	4	0	0	0	0.0072369	3	22250	22250;22299;22347		85.642	49.514	1	1341800			51764	4035;5976	29539	29540	63436;63437;63438	63436					-0.008256594139993467
VFLPDNGAFF	10	Unmodified	_VFLPDNGAFF_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B;ENSG00000165548|ENST00000298351|TMEM63C	nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000165548|ENST00000298351|TMEM63C	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7820434570312	2	563.782025	1125.5495	0.47712	0.00026899	-0.32274	-0.00018195	0.15439	8.704E-05	563.7819139936881	84.963	1.0717	84.951	84.683	85.754	-0.01284					107	41	4	0	0	0	0.0029823	2	22274	22274;22326		103.42	67.292	1	1278300			51765	4035;5976	29539	29540	63439;63440	63439					-0.008256594139993467
VFLPDQGAFF	10	Unmodified	_VFLPDQGAFF_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.7899169921875	2	570.78985	1139.56515	0.46264	0.00026407	0.31356	0.00017898	0.7762	0.00044305	570.7899394946718	84.891	1.2933	84.891	84.612	85.905	0					129	49	4	0	0	0	0.0012047	3	22290	22244;22290;22341		118.07	78.111	1	1997300			51766	7834	29540	29541	63441;63442;63443	63442					0.0009462710304433131
VFLPDQGAFF	10	Unmodified	_VFLPDQGAFF_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7899780273438	2	570.78985	1139.56515	0.58252	0.0003325	0.055565	3.1716E-05	0.63809	0.00036421	570.7898493652917	84.805	1.5878	84.886	84.618	86.206	0.080887					169	60	5	0	0	0	0.0012047	2	22256	22210;22256		118.07	78.111	1	1899800			51767	7834	29540	29541	63444;63445	63445					0.0009462710304433131
VFLPDQGAFF	10	Unmodified	_VFLPDQGAFF_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.7898559570312	2	570.78985	1139.56515	0.46284	0.00026418	0.15883	9.0656E-05	0.62167	0.00035484	570.7899181585987	84.92	1.5191	84.907	84.557	86.076	-0.01284					158	58	4	0	0	0	0.0003305	3	22272	22227;22272;22317		129.77	89.815	1	1974800			51768	7834	29540	29541	63446;63447;63448	63447					0.0009462710304433131
VFLPSEAPCP	10	Unmodified	_VFLPSEAPCP_					0	0	0		ENSG00000160796|ENST00000450053|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	ENSG00000160796|ENST00000450053|NBEAL2	ENSG00000160796|ENST00000450053|NBEAL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.8270263671875	2	530.26261	1058.51067	0.15221	8.0709E-05	-2.9811	-0.0015808	-2.8289	-0.0015001	530.2613484629376	12.74	0.28495	12.74	12.641	12.925	0					13	9	2	0	0	0	0.32123	1	220	220		1.6526	0.17072	1	15082			51769	5489	29541	29542	63449	63449					-0.016247080400489722
VFLPSTPGL	9	Unmodified	_VFLPSTPGL_					0	0	0		nc|ENSG00000158604|Q7Z7H5-3|TMED4;ENSG00000158604|ENST00000457408|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-3|TMED4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.777587890625	2	465.768386	929.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.577	1	70.552	70.052	71.052	-0.024872								0	0	0	0.21726	1	17881	17881		16.942	0	1				51770	5363	29542	29543	63450	63450					0.05463857045606346
VFLQNDAF	8	Unmodified	_VFLQNDAF_					0	0	0			REV__ENST00000493581.1_1_9:33442831-33443074:-|nuORF	REV__ENST00000493581.1_1_9:33442831-33443074:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.27655029296875	2	477.239993	952.465432	0.6389	0.00030491	-0.29511	-0.00014084	0.34379	0.00016407	477.23995086081453	60.658	0.31752	60.755	60.608	60.925	0.096989					14	10	2	0	0	0	0.33618	1	14859	14859		17.087	17.087	1	98768	+		51771	17223	29543	29544	63451	63451					-0.012701905109111067
VFLQNHVR	8	Unmodified	_VFLQNHVR_					0	0	0		nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF	nc|ENSG00000157212|Q6ZW49-1|PAXIP1	nc|ENSG00000157212|Q6ZW49-1|PAXIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.81646728515625	2	506.787976	1011.5614	-0.14291	-7.2427E-05	3.0351	0.0015381	2.8922	0.0014657	507.29041839121226	12.167	0.10777	12.099	12.032	12.14	-0.06806					7	5	2	0	0	0	0.34408	1	45	45		2.3027	0.24298	1	10406			51772	10703	29544	29545	63452	63452					0.05608002119845423
VFLRAINKF	9	Unmodified	_VFLRAINKF_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000522994.1_1_5:169412837-169427133:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3193359375	2	554.337301	1106.66005	0.64065	0.00035513	-0.49121	-0.0002723	0.14943	8.2837E-05	554.336821011332	47.138	0.39149	47.138	46.961	47.352	0					27	13	3	0	0	0	0.082808	1	10687	10687		49.933	34.086	1	457090			51773	3792	29545	29546	63453	63453					0.11098605364873038
VFLRAINKF	9	Unmodified	_VFLRAINKF_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000522994.1_1_5:169412837-169427133:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3193969726562	2	554.337301	1106.66005	0.31597	0.00017515	-0.36404	-0.0002018	-0.048071	-2.6648E-05	554.3370094403882	47.093	0.55941	47.145	46.984	47.544	0.052574					36	20	2	0	0	0	0.19839	1	10623	10623		10.824	2.2306	1	523450			51774	3792	29545	29546	63454	63454					0.11098605364873038
VFLRAINKF	9	Unmodified	_VFLRAINKF_					0	0	0		ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000522994.1_1_5:169412837-169427133:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3194580078125	2	554.337301	1106.66005	0.91458	0.00050699	-0.7931	-0.00043964	0.12149	6.7344E-05	554.3368442054465	47.092	0.4125	47.147	46.972	47.384	0.054371					27	14	2	0	0	0	0.081926	1	10641	10641		39.957	32.668	1	502070			51775	3792	29545	29546	63455	63455					0.11098605364873038
VFLRRSRQ	8	Unmodified	_VFLRRSRQ_					0	0	0		nc|ENSG00000149761|Q9BRQ3-2|NUDT22;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;ENST00000422364.2_1_11:63994043-63994784:+|nuORF;nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22	nc|ENSG00000149761|Q9BRQ3-2|NUDT22	nc|ENSG00000149761|Q9BRQ3-2|NUDT22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3033447265625	2	531.319974	1060.6254	0.61604	0.00032732	1.0599	0.00056313	1.6759	0.00089045	531.3202865683357	55.673	0.38139	55.744	55.422	55.804	0.070885					20	13	2	0	0	0	0.4397	1	13234	13234		9.3474	0.75416	1	213170			51776	4891	29546	29547	63456	63456					0.09750782276796599
VFLSCGLISK	10	Unmodified	_VFLSCGLISK_					0	0	0		ENST00000535011.6_1_7:128410370-128410973:+|nuORF	ENST00000535011.6_1_7:128410370-128410973:+|nuORF	ENST00000535011.6_1_7:128410370-128410973:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7883911132812	2	533.801903	1065.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.164	1	50.164	49.664	50.664	0								0	0	0	0.21484	1	11613	11613		38.176	5.3899	1				51777	11668	29547	29548	63457	63457					0.05908144265072224
VFLSCGLISK	10	Unmodified	_VFLSCGLISK_					0	0	0		ENST00000535011.6_1_7:128410370-128410973:+|nuORF	ENST00000535011.6_1_7:128410370-128410973:+|nuORF	ENST00000535011.6_1_7:128410370-128410973:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.8109741210938	2	533.801903	1065.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.207	1	50.207	49.707	50.707	0								0	0	0	0.10248	1	11627	11627		53.833	21.527	1				51778	11668	29547	29548	63458	63458					0.05908144265072224
VFLSCGLISK	10	Unmodified	_VFLSCGLISK_					0	0	0		ENST00000535011.6_1_7:128410370-128410973:+|nuORF	ENST00000535011.6_1_7:128410370-128410973:+|nuORF	ENST00000535011.6_1_7:128410370-128410973:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7881469726562	2	533.801903	1065.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.41	1	50.41	49.91	50.91	0								0	0	0	0.15275	1	11689	11689		45.7	13.394	1				51779	11668	29547	29548	63459	63459					0.05908144265072224
VFLSCGLISK	10	Unmodified	_VFLSCGLISK_					0	0	0		ENST00000535011.6_1_7:128410370-128410973:+|nuORF	ENST00000535011.6_1_7:128410370-128410973:+|nuORF	ENST00000535011.6_1_7:128410370-128410973:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7882080078125	2	533.801903	1065.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.127	1	50.147	49.647	50.647	0.020691								0	0	0	0.21484	1	11593	11593		38.176	12.776	1				51780	11668	29547	29548	63460	63460					0.05908144265072224
VFLSCGLISK	10	Unmodified	_VFLSCGLISK_					0	0	0		ENST00000535011.6_1_7:128410370-128410973:+|nuORF	ENST00000535011.6_1_7:128410370-128410973:+|nuORF	ENST00000535011.6_1_7:128410370-128410973:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.8108520507812	2	533.801903	1065.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.199	1	50.22	49.72	50.72	0.020691								0	0	0	0.21484	1	11615	11615		38.176	11.292	1				51781	11668	29547	29548	63461	63461					0.05908144265072224
VFLSCGLISK	10	Unmodified	_VFLSCGLISK_					0	0	0		ENST00000535011.6_1_7:128410370-128410973:+|nuORF	ENST00000535011.6_1_7:128410370-128410973:+|nuORF	ENST00000535011.6_1_7:128410370-128410973:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7880249023438	2	533.801903	1065.58925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.484	1	50.504	50.004	51.004	0.020691								0	0	0	0.31311	1	11702	11702		26.268	0.86883	1				51782	11668	29547	29548	63462	63462					0.05908144265072224
VFLSPTLQS	9	Unmodified	_VFLSPTLQS_					0	0	0			REV__ENST00000540306.5_2_17:41603965-41604127:+|nuORF	REV__ENST00000540306.5_2_17:41603965-41604127:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7840881347656	2	496.276575	990.538597	0.57126	0.0002835	0.68966	0.00034226	1.2609	0.00062577	496.27637494360044	85.148	2.2588	85.136	84.267	86.525	-0.01284					309	88	7	0	0	0	0.28674	1	22266	22266		10.824	1.4765	1	6441000	+		51783	22111	29548	29549	63463	63463					0.04294938211717181
VFLSQLKLPA	10	Unmodified	_VFLSQLKLPA_					0	0	0		ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.8162841796875	2	558.344792	1114.67503	0.30518	0.0001704	-0.58986	-0.00032935	-0.28468	-0.00015895	558.344323349301	40.564	0.16264	40.664	40.532	40.694	0.099407					6	5	2	0	0	0	0.3144	1	8656	8656		8.7454	0	1	69146			51784	1199	29549	29550	63464	63464					0.12228052442242188
VFLTHCNWIF	10	Unmodified	_VFLTHCNWIF_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.2642822265625	3	427.214593	1278.62195	0.35206	0.0001504	2.309	0.00098644	2.6611	0.0011368	427.21550067595206	47.465	0.23599	47.508	47.455	47.691	0.04332					13	8	2	0	0	0	0.3183	1	10802	10802		8.4443	4.2548	1	241780			51785	8310	29550	29551	63465	63465					-0.006216486121047637
VFLVKEHPDPG	11	Unmodified	_VFLVKEHPDPG_					0	0	0		ENST00000524263.5_1_8:37968258-37975025:+|nuORF;nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L	ENST00000524263.5_1_8:37968258-37975025:+|nuORF	ENST00000524263.5_1_8:37968258-37975025:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.53656005859375	3	413.224034	1236.65027	0.40726	0.00016829	-0.10708	-4.4247E-05	0.30018	0.00012404	413.22404522860387	44.666	1.2577	44.735	44.199	45.456	0.068569					96	45	4	0	0	0	0.33122	1	10069	10069		2.4348	1.22	1	1095800			51786	3438	29551	29552	63466	63466					0.04141372568847146
VFLVQNILN	9	Unmodified	_VFLVQNILN_					0	0	0			REV__ENST00000574998.5_1_16:14186646-14234409:+|nuORF	REV__ENST00000574998.5_1_16:14186646-14234409:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7979736328125	2	530.313492	1058.61243	0.69217	0.00036707	-1.0073	-0.0005342	-0.31516	-0.00016713	530.3131237849259	64.362	0.12846	64.353	64.26	64.389	-0.0095291					6	4	2	0	0	0	0.24311	1	15987	15987		16.942	6.1184	1	49631	+		51787	22440	29552	29553	63467	63467					0.08546906374067476
VFLWAMLSI	9	Unmodified	_VFLWAMLSI_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3013305664062	2	540.301539	1078.58852	0.41403	0.0002237	-1.011	-0.00054625	-0.59697	-0.00032255	540.3008766290833	27.011	0.36542	27.011	26.841	27.207	0					26	12	3	0	0	0	0.30623	1	4535	4535		7.9102	0.3012	1	96548			51788	1828	29553	29554	63468	63468					0.052373496160271316
VFLWAMLSI	9	Unmodified	_VFLWAMLSI_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	540.301539	1078.58852	0.37007	0.00019995	-0.78191	-0.00042247	-0.41183	-0.00022251	540.3011380901308	26.993	0.4275	26.972	26.788	27.215	-0.021412	-0.042727	0.00010798	NaN	7.9102	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137700			51789	1828	29553	29554							0.052373496160271316
VFLWAMLSI	9	Unmodified	_VFLWAMLSI_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	540.301539	1078.58852	0.5442	0.00029403	-0.80176	-0.00043319	-0.25756	-0.00013916	540.3010386311731	27.073	0.38797	27.061	26.851	27.239	-0.011562	0.046503	8.653E-05	NaN	7.9102	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100840			51790	1828	29553	29554							0.052373496160271316
VFLYNSKLF	9	Unmodified	_VFLYNSKLF_					0	0	0			REV__nc|ENSG00000152670|Q9NQI0-3|DDX4	REV__nc|ENSG00000152670|Q9NQI0-3|DDX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.8159790039062	2	565.815867	1129.61718	0.49065	0.00027762	-0.34973	-0.00019788	0.14092	7.9736E-05	565.8156498403963	84.775	0.99007	84.775	84.376	85.366	0					84	36	3	0	0	0	0.2616	1	22282	22282		14.582	0	1	1345500	+		51791	16591	29554	29555	63469	63469					0.05755790516809611
VFLYYGTTMG	10	Unmodified	_VFLYYGTTMG_					0	0	0		ENSG00000172150|ENST00000381951|OR1A2	ENSG00000172150|ENST00000381951|OR1A2	ENSG00000172150|ENST00000381951|OR1A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8431396484375	2	576.275718	1150.53688	0.46011	0.00026515	1.8298	0.0010545	2.2899	0.0013196	576.2766740504677	84.776	0.50522	84.763	84.493	84.998	-0.012833					39	20	3	0	0	0	0.31482	1	22297	22297		7.2892	0	1	207260			51792	6605	29555	29556	63470	63470					-0.03236438868566438
VFMHWNFF	8	Unmodified	_VFMHWNFF_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3204956054688	2	564.260205	1126.50586	0.23187	0.00013083	3.0576	0.0017253	3.2894	0.0018561	564.2615662210171	62.082	0.2173	62.082	61.945	62.162	0					12	7	2	0	0	0	0.33995	1	15318	15318		5.7604	0	1	87404	+		51793	16263	29556	29557	63471	63471					-0.05233547392140281
VFMKVVKP	8	Unmodified	_VFMKVVKP_					0	0	0		nc|ENSG00000148655|Q9H2I8|LRMDA;ENST00000593699.5_1_10:77643188-78317043:+|nuORF;ENSG00000148655|ENST00000611255|LRMDA	nc|ENSG00000148655|Q9H2I8|LRMDA	nc|ENSG00000148655|Q9H2I8|LRMDA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.29083251953125	2	474.290974	946.567395	0.19114	9.0657E-05	-0.16066	-7.6201E-05	0.03048	1.4457E-05	474.2907796338292	71.479	1.8231	71.479	70.873	72.696	0					207	65	4	0	0	0	0.45015	1	18362	18362		5.7604	5.7604	1	2291700			51794	4822	29557	29558	63472	63472					0.09197384307162793
VFMPHGLGHFL	11	Oxidation (M)	_VFM(Oxidation (M))PHGLGHFL_		VFM(1)PHGLGHFL		VFM(40)PHGLGHFL	0	0	1		nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD;nc|ENSG00000124299|P12955-3|PEPD	nc|ENSG00000124299|P12955-2|PEPD	nc|ENSG00000124299|P12955-2|PEPD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.218017578125	3	424.218226	1269.63285	0.14115	5.9878E-05	-0.63402	-0.00026896	-0.49287	-0.00020908	424.21787796611676	54.381	0.98819	54.444	53.902	54.89	0.063206					92	36	4	0	0	0	0.099415	1	12902	12902		40.239	22.376	1	1054300			51795	3151	29558	29559	63473	63473		390			0.008817537622007876
VFMPHGLGHFL	11	Oxidation (M)	_VFM(Oxidation (M))PHGLGHFL_		VFM(1)PHGLGHFL		VFM(48)PHGLGHFL	0	0	1		nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD;nc|ENSG00000124299|P12955-3|PEPD	nc|ENSG00000124299|P12955-2|PEPD	nc|ENSG00000124299|P12955-2|PEPD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.21795654296875	3	424.218226	1269.63285	0.25036	0.00010621	-0.82744	-0.00035101	-0.57708	-0.00024481	424.217761605203	54.665	1.4839	54.649	53.809	55.293	-0.015923					104	53	4	0	0	0	0.069534	2	12970	12970;13018		47.594	31.029	1	1275400			51796	3151	29558	29559	63474;63475	63474		390			0.008817537622007876
VFMSCSSDWTV	11	Unmodified	_VFMSCSSDWTV_					0	0	0		ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7510986328125	3	421.179108	1260.5155	-0.047065	-1.9823E-05	0.27137	0.0001143	0.22431	9.4474E-05	421.1790574335656	79.861	0.50451	79.861	79.592	80.097	0					27	18	2	0	0	0	0.33122	1	20721	20721		4.4062	3.1913	1	199620			51797	3067	29559	29560	63476	63476					-0.10434191959598138
VFMSCSSDWTV	11	Unmodified	_VFMSCSSDWTV_					0	0	0		ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.75128173828125	3	421.179108	1260.5155	0.066769	2.8122E-05	0.5054	0.00021287	0.57217	0.00024099	421.51361030416564	79.75	0.45726	79.811	79.594	80.051	0.061409					20	16	2	0	0	0	0.33236	1	20742	20742		2.4348	1.808	1	265270			51798	3067	29559	29560	63477	63477					-0.10434191959598138
VFNDVRLLL	9	Unmodified	_VFNDVRLLL_					0	0	0		ENSG00000198898|ENST00000361183|CAPZA2;ENST00000485542.5_1_1:113162466-113192092:+|nuORF;ENST00000476936.5_1_1:113162466-113209756:+|nuORF;ENST00000464669.1_1_7:116502674-116546397:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3474731445312	2	544.826766	1087.63898	0.69451	0.00037839	-1.2551	-0.00068381	-0.56059	-0.00030543	545.3275475008578	71.704	0.85765	71.677	71.57	72.428	-0.027267					59	30	3	0	0	0	0.24289	1	18440	18440		13.042	5.1323	1	150130			51799	8154	29560	29561	63478	63478					0.09866595265384603
VFNFLELFY	9	Unmodified	_VFNFLELFY_					0	0	0			REV__ENST00000502503.1_1_5:93410379-93447342:-|nuORF	REV__ENST00000502503.1_1_5:93410379-93447342:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.3428344726562	2	596.307875	1190.6012	0.49662	0.00029614	-1.7483	-0.0010425	-1.2517	-0.0007464	596.8075614100827	67.354	0.13374	67.432	67.354	67.488	0.078041					6	4	2	0	0	0	0.25526	1	16917	16917		7.9102	0	1	79443	+		51800	21717	29561	29562	63479	63479					0.013520842798925514
VFNQIIYSQ	9	Unmodified	_VFNQIIYSQ_					0	0	0			REV__ENST00000489245.5_1_3:183211997-183273441:-|nuORF	REV__ENST00000489245.5_1_3:183211997-183273441:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2928466796875	2	556.292756	1110.57096	-0.071616	-3.9839E-05	1.0267	0.00057114	0.95507	0.0005313	556.2931213230914	14.579	0.35001	14.513	14.349	14.699	-0.066068					18	12	2	0	0	0	0.33276	1	784	784		3.9444	0.3479	1	65859	+		51801	17724	29562	29563	63480	63480					0.02009725614720992
VFNQIIYSQ	9	Unmodified	_VFNQIIYSQ_					0	0	0			REV__ENST00000489245.5_1_3:183211997-183273441:-|nuORF	REV__ENST00000489245.5_1_3:183211997-183273441:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	556.292756	1110.57096	0.034604	1.925E-05	0.61294	0.00034097	0.64754	0.00036022	556.2928901904313	14.564	0.3733	14.459	14.308	14.681	-0.10466	-0.0052075	-1.9867E-05	NaN	3.9444	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57949	+		51802	17724	29562	29563							0.02009725614720992
VFNQIIYSQ	9	Unmodified	_VFNQIIYSQ_					0	0	0			REV__ENST00000489245.5_1_3:183211997-183273441:-|nuORF	REV__ENST00000489245.5_1_3:183211997-183273441:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	556.292756	1110.57096	-0.071616	-3.9839E-05	1.0267	0.00057114	0.95507	0.0005313	556.2931213230914	14.579	0.35001	14.513	14.349	14.699	-0.066068	0.048464	0.00044046	NaN	3.9444	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65859	+		51803	17724	29562	29563							0.02009725614720992
VFPAGLANV	9	Unmodified	_VFPAGLANV_					0	0	0		ALDH16A1|p.V722E|1|0.67|ENSG00000161618|chr19:49468904-49468904|T/A|missense_variant;ENST00000594549.1_1_19:49971616-49973721:+|nuORF;ENST00000599652.5_1_19:49969097-49972327:+|nuORF;nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENSG00000161618|ENST00000293350|ALDH16A1	ALDH16A1|p.V722E|1|0.67|ENSG00000161618|chr19:49468904-49468904|T/A|missense_variant	ALDH16A1|p.V722E|1|0.67|ENSG00000161618|chr19:49468904-49468904|T/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.765869140625	2	444.252903	886.491253	0.45321	0.00020134	1.1152	0.00049542	1.5684	0.00069676	444.25355867611853	65.769	0.50446	65.758	65.53	66.034	-0.011337					35	17	3	0	0	0	0.1659	1	16441	16441		36.044	5.8194	1	235300			51804	27	29563	29564	63481	63481					0.043467037313689616
VFPCKIKI	8	Unmodified	_VFPCKIKI_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2908630371094	2	474.290974	946.567395	0.33668	0.00015968	-0.33808	-0.00016035	-0.0013973	-6.6274E-07	474.2907060436796	71.591	1.9657	71.563	70.854	72.82	-0.027275					229	70	4	0	0	0	0.45851	1	18387	18387		2.8892	0	1	2573300			51805	5355	29564	29565	63482	63482					0.09197384307140055
VFPDDMPTL	9	Oxidation (M)	_VFPDDM(Oxidation (M))PTL_		VFPDDM(1)PTL		VFPDDM(44)PTL	0	0	1		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.I1184Yfs*28|1|0.26|ENSG00000118058|chr11:118478180-118478181|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.74462890625	2	525.74425	1049.47395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.573	1	59.573	59.073	60.073	0								0	0	0	0.11063	1	14513	14513		43.858	25.723	1				51806	2814	29565	29566	63483	63483		356			-0.04881004656613186
VFPDDMPTL	9	Oxidation (M)	_VFPDDM(Oxidation (M))PTL_		VFPDDM(1)PTL		VFPDDM(61)PTL	0	0	1		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.I1184Yfs*28|1|0.26|ENSG00000118058|chr11:118478180-118478181|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.744384765625	2	525.74425	1049.47395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.038	1	60.038	59.538	60.538	0								0	0	0	0.048469	1	14657	14657		61.357	38.209	1				51807	2814	29565	29566	63484	63484		356			-0.04881004656613186
VFPDDMPTL	9	Oxidation (M)	_VFPDDM(Oxidation (M))PTL_		VFPDDM(1)PTL		VFPDDM(85)PTL	0	0	1		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.I1184Yfs*28|1|0.26|ENSG00000118058|chr11:118478180-118478181|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7440185546875	2	525.74425	1049.47395	0.073341	3.8559E-05	0.17604	9.2554E-05	0.24938	0.00013111	525.7442871011232	60.008	1.7855	60.103	59.081	60.866	0.095089					97	64	2	0	0	0	0.006189	2	14667	14591;14667		85.272	51.17	1	488320			51808	2814	29565	29566	63485;63486	63486		356			-0.04881004656613186
VFPDDMPTL	9	Oxidation (M)	_VFPDDM(Oxidation (M))PTL_		VFPDDM(1)PTL		VFPDDM(59)PTL	0	0	1		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.I1184Yfs*28|1|0.26|ENSG00000118058|chr11:118478180-118478181|-/T|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7439575195312	2	525.74425	1049.47395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.16	1	60.149	59.649	60.649	-0.011486								0	0	0	0.057388	1	14688	14688		58.679	31.795	1				51809	2814	29565	29566	63487	63487		356			-0.04881004656613186
VFPDKEVML	9	Unmodified	_VFPDKEVML_					0	0	0		ENSG00000104823|ENST00000221418|ECH1;ENST00000601333.1_1_19:39306255-39306727:-|nuORF	ENSG00000104823|ENST00000221418|ECH1	ENSG00000104823|ENST00000221418|ECH1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3009033203125	2	539.286085	1076.55762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.99	1	43.99	43.49	44.49	0								0	0	0	0.20953	1	9711	9711		19.439	3.5918	1				51810	1920	29566	29567	63488	63488					0.022401515111141634
VFPDKGYSF	9	Unmodified	_VFPDKGYSF_					0	0	0		ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000482876.5_1_2:70442329-70444102:-|nuORF	ENST00000482876.5_1_2:70442329-70444102:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2611694335938	2	530.260925	1058.5073	0.82885	0.00043951	-0.17232	-9.1374E-05	0.65654	0.00034814	530.2608309869217	50.661	2.8438	50.661	49.953	52.797	0					306	104	5	0	0	0	0.0040516	6	11759	11661;11710;11759;11802;11850;11900		93.938	47.917	1	10736000			51811	2695	29567	29568	63489;63490;63491;63492;63493;63494	63491					-0.019616348223962632
VFPDKGYSF	9	Unmodified	_VFPDKGYSF_					0	0	0		ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000482876.5_1_2:70442329-70444102:-|nuORF	ENST00000482876.5_1_2:70442329-70444102:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2611083984375	2	530.260925	1058.5073	0.78189	0.00041461	-0.15567	-8.2545E-05	0.62622	0.00033206	530.2608350674723	50.566	3.1269	50.611	49.905	53.032	0.044891					314	115	5	0	0	0	0.0073901	6	11728	11636;11685;11728;11778;11827;11878		83.429	49.027	1	10120000			51812	2695	29567	29568	63495;63496;63497;63498;63499;63500	63497					-0.019616348223962632
VFPDKGYSF	9	Unmodified	_VFPDKGYSF_					0	0	0		ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000482876.5_1_2:70442329-70444102:-|nuORF	ENST00000482876.5_1_2:70442329-70444102:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2313842773438	2	530.260925	1058.5073	0.41858	0.00022195	2.2621	0.0011995	2.6807	0.0014215	530.2625170116974	70.408	0.44691	70.469	70.127	70.574	0.060783					22	15	2	0	0	0	0.2451	1	17838	17838		15.847	2.3393	1	187910			51813	2695	29567	29568	63501	63501					-0.019616348223962632
VFPDKGYSF	9	Unmodified	_VFPDKGYSF_					0	0	0		ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF	ENST00000482876.5_1_2:70442329-70444102:-|nuORF	ENST00000482876.5_1_2:70442329-70444102:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.260986328125	2	530.260925	1058.5073	0.8779	0.00046552	-0.21845	-0.00011583	0.65945	0.00034968	530.2607919369082	50.672	3.7119	50.693	49.825	53.537	0.020691					376	138	5	0	0	0	0.0045319	7	11739	11604;11648;11695;11739;11788;11835;11883		90.135	50.178	1	9668800			51814	2695	29567	29568	63502;63503;63504;63505;63506;63507;63508	63505					-0.019616348223962632
VFPEKGYSF	9	Unmodified	_VFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2693481445312	2	537.26875	1072.52295	0.59636	0.0003204	-0.14534	-7.8085E-05	0.45102	0.00024232	537.2688301468658	49.638	5.9422	49.638	48.636	54.578	0					572	218	5	0	0	0	0.0028032	11	11444	11260;11311;11361;11401;11444;11496;11546;11593;11634;11734;11781		103.82	71.518	1	21056000			51815	4991	29568	29569	63509;63510;63511;63512;63513;63514;63515;63516;63517;63518;63519	63513					-0.010413483053298478
VFPEKGYSF	9	Unmodified	_VFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2689208984375	2	537.26875	1072.52295	0.50542	0.00027155	-0.050694	-2.7237E-05	0.45473	0.00024431	537.2688996191606	49.566	5.3544	49.611	48.69	54.044	0.044891					527	198	5	0	0	0	0.0040516	13	11564	11282;11329;11378;11420;11468;11516;11564;11611;11721;11730;11782;11883;12016		93.938	61.633	1	24904000			51816	4991	29568	29569	63520;63521;63522;63523;63524;63525;63526;63527;63528;63529;63530;63531;63532	63526					-0.010413483053298478
VFPEKGYSF	9	Unmodified	_VFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2694091796875	2	537.26875	1072.52295	0.57713	0.00031007	-0.099962	-5.3706E-05	0.47717	0.00025637	537.2688561844116	49.457	4.527	49.489	48.632	53.159	0.032043					533	167	5	0	0	0	0.0032746	11	11385	11247;11298;11342;11385;11434;11483;11533;11582;11629;11773;11824		100.09	67.785	1	20801000			51817	4991	29568	29569	63533;63534;63535;63536;63537;63538;63539;63540;63541;63542;63543	63536					-0.010413483053298478
VFPERSFV	8	Unmodified	_VFPERSFV_					0	0	0			REV__nc|ENSG00000167968|Q92874-2|DNASE1L2	REV__nc|ENSG00000167968|Q92874-2|DNASE1L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2632751464844	2	490.763635	979.512717	0.5997	0.00029431	0.28912	0.00014189	0.88882	0.0004362	490.76320877491645	78.707	0.89956	78.707	78.389	79.289	0					45	36	2	0	0	0	0.34319	1	20393	20393		5.7604	0	1	143030	+		51818	17423	29569	29570	63544	63544					0.02214088760104005
VFPFLKMVL	9	Unmodified	_VFPFLKMVL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7738647460938	2	547.327556	1092.64056	1.0336	0.00056573	-0.014769	-8.0836E-06	1.0189	0.00055765	547.327469001136	50.726	0.84713	50.736	50.298	51.145	0.0095634					61	31	3	0	0	0	0.25417	1	11849	11849		8.5933	1.304	1	561600			51819	1349	29570	29571	63545	63545					0.09794513029783047
VFPGTNLVF	9	Unmodified	_VFPGTNLVF_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2735900878906	2	497.273835	992.533118	0.39981	0.00019882	-0.45035	-0.00022395	-0.050534	-2.5129E-05	497.27320093940983	79.847	1.248	79.847	79.164	80.412	0					85	47	3	0	0	0	0.13748	2	20821	20760;20821		32.786	3.6823	1	313760			51820	899	29571	29572	63546;63547	63547					0.03655259419895174
VFPGTNLVF	9	Unmodified	_VFPGTNLVF_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.27362060546875	2	497.273835	992.533118	0.40607	0.00020193	-0.12866	-6.398E-05	0.27741	0.00013795	497.27339354232726	79.839	1.0068	79.9	79.335	80.342	0.061409					80	38	3	0	0	0	0.088443	1	20717	20717		39.95	3.8227	1	301890			51821	899	29571	29572	63548	63548					0.03655259419895174
VFPGTNLVF	9	Unmodified	_VFPGTNLVF_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2740783691406	2	497.273835	992.533118	0.39359	0.00019572	-0.33842	-0.00016829	0.055176	2.7438E-05	497.273481021663	79.865	1.1247	79.836	79.348	80.473	-0.028931					70	40	3	0	0	0	0.11461	1	20784	20784		36.127	3.8215	1	253840			51822	899	29571	29572	63549	63549					0.03655259419895174
VFPGTNLVF	9	Unmodified	_VFPGTNLVF_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	497.273835	992.533118	0.39359	0.00019572	-0.33842	-0.00016829	0.055176	2.7438E-05	497.273481021663	79.865	1.1247	79.836	79.348	80.473	-0.028931	-0.025206	-1.9287E-05	NaN	39.95	70	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253840			51823	899	29571	29572							0.03655259419895174
VFPKPLITRF	10	Unmodified	_VFPKPLITRF_					0	0	0		ENSG00000099250|ENST00000374867|NRP1;nc|ENSG00000099250|O14786-3|NRP1;nc|ENSG00000099250|O14786-2|NRP1	ENSG00000099250|ENST00000374867|NRP1	ENSG00000099250|ENST00000374867|NRP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.5847473144531	3	406.585015	1216.73321	0.23059	9.3753E-05	-0.43811	-0.00017813	-0.20753	-8.4377E-05	406.58474693705017	54.525	0.6512	54.525	54.24	54.891	0					58	23	4	0	0	0	0.23397	1	12935	12935		19.987	11.543	1	758420			51824	1479	29572	29573	63550	63550					0.1335173408749597
VFPKPLITRF	10	Unmodified	_VFPKPLITRF_					0	0	0		ENSG00000099250|ENST00000374867|NRP1;nc|ENSG00000099250|O14786-3|NRP1;nc|ENSG00000099250|O14786-2|NRP1	ENSG00000099250|ENST00000374867|NRP1	ENSG00000099250|ENST00000374867|NRP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	406.585015	1216.73321	0.22354	9.0889E-05	-0.45575	-0.0001853	-0.2322	-9.441E-05	406.584716325144	54.458	0.67183	54.522	54.218	54.89	0.063202	-0.020651	-5.2058E-05	NaN	19.987	60	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	854980			51825	1479	29572	29573							0.1335173408749597
VFPKPLITRF	10	Unmodified	_VFPKPLITRF_					0	0	0		ENSG00000099250|ENST00000374867|NRP1;nc|ENSG00000099250|O14786-3|NRP1;nc|ENSG00000099250|O14786-2|NRP1	ENSG00000099250|ENST00000374867|NRP1	ENSG00000099250|ENST00000374867|NRP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	406.585015	1216.73321	0.25571	0.00010397	-0.32201	-0.00013093	-0.066306	-2.6959E-05	406.58477006244516	54.596	0.61828	54.581	54.361	54.98	-0.015923	0.038286	0.00011106	NaN	19.987	58	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	820990			51826	1479	29572	29573							0.1335173408749597
VFPLLSSL	8	Unmodified	_VFPLLSSL_					0	0	0			REV__ENSG00000011114|ENST00000334746|BTBD7	REV__ENSG00000011114|ENST00000334746|BTBD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2653503417969	2	438.265479	874.516405	0.017946	7.8651E-06	-0.12259	-5.3725E-05	-0.10464	-4.586E-05	438.26526223783327	81.018	0.6797	81.018	80.733	81.412	0					90	33	3	0	0	0	0.10409	1	21090	21090		59.795	3.2539	1	1184600	+		51827	13425	29573	29574	63551	63551					0.0741275853396246
VFPRLHNVLF	10	Unmodified	_VFPRLHNVLF_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5764465332031	3	414.576631	1240.70806	-0.44683	-0.00018524	-0.26492	-0.00010983	-0.71175	-0.00029507	414.57654264522995	60.146	0.54352	60.146	59.87	60.413	0					49	19	3	0	0	0	0.20278	1	14677	14677		27.223	14.996	1	902320			51828	3901	29574	29575	63552	63552					0.09733679284931895
VFPRLHNVLF	10	Unmodified	_VFPRLHNVLF_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.91064453125	3	414.576631	1240.70806	-0.3601	-0.00014929	-0.26653	-0.0001105	-0.62663	-0.00025979	414.5765709421157	59.965	0.68125	60.06	59.714	60.395	0.095093					61	24	3	0	0	0	0.21644	2	14608	14608;14676		20.581	6.3066	1	1303000			51829	3901	29574	29575	63553;63554	63553					0.09733679284931895
VFPRLHNVLF	10	Unmodified	_VFPRLHNVLF_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.57647705078125	3	414.576631	1240.70806	0.055984	2.321E-05	-0.6502	-0.00026956	-0.59422	-0.00024635	414.57640570622596	60.057	0.6408	60.046	59.763	60.404	-0.011486					57	22	3	0	0	0	0.30958	1	14662	14662		16.566	7.8141	1	655680			51830	3901	29574	29575	63555	63555					0.09733679284931895
VFPRLHNVLF	10	Unmodified	_VFPRLHNVLF_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.361328125	2	621.361308	1240.70806	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.121	1	60.109	59.609	60.609	-0.011486								0	0	0	0.24599	1	14676	14676		34.402	19.153	1				51831	3901	29574	29575	63556	63556					0.09733679284931895
VFPSMPIKLQL	11	Oxidation (M)	_VFPSM(Oxidation (M))PIKLQL_		VFPSM(1)PIKLQL		VFPSM(42)PIKLQL	0	0	1		ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.8699951171875	2	644.870317	1287.72608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.411	1	67.489	66.989	67.989	0.078041								0	0	0	0.12347	1	16918	16918		42.312	28.698	1				51832	3399	29575	29576	63557	63557		427			0.09372633424777632
VFPSPLPNI	9	Unmodified	_VFPSPLPNI_					0	0	0		SALL1|p.G1140Wfs*35|1|0.22|ENSG00000103449|chr16:51138804-51138805|-/A|frameshift_variant;ENSG00000103449|ENST00000251020|SALL1;SALL1|p.Q507Hfs*10|1|0.08|ENSG00000103449|chr16:51140701-51140702|-/AAGA|frameshift_variant;nc|ENSG00000103449|Q9NSC2-2|SALL1;ENST00000438101.1_1_X:49431298-49432372:-|nuORF	SALL1|p.G1140Wfs*35|1|0.22|ENSG00000103449|chr16:51138804-51138805|-/A|frameshift_variant;ENST00000438101.1_1_X:49431298-49432372:-|nuORF	SALL1|p.G1140Wfs*35|1|0.22|ENSG00000103449|chr16:51138804-51138805|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2814025878906	2	492.28166	982.548768	0.32305	0.00015903	-0.98041	-0.00048264	-0.65736	-0.00032361	492.2808822456424	76.618	1.4684	76.618	75.649	77.117	0					84	53	3	0	0	0	0.057976	1	19721	19721		49.933	26.785	1	372600			51833	1835;10536	29576	29577	63558	63558					0.05679545936936847
VFPSPLPNI	9	Unmodified	_VFPSPLPNI_					0	0	0		SALL1|p.G1140Wfs*35|1|0.22|ENSG00000103449|chr16:51138804-51138805|-/A|frameshift_variant;ENSG00000103449|ENST00000251020|SALL1;SALL1|p.Q507Hfs*10|1|0.08|ENSG00000103449|chr16:51140701-51140702|-/AAGA|frameshift_variant;nc|ENSG00000103449|Q9NSC2-2|SALL1;ENST00000438101.1_1_X:49431298-49432372:-|nuORF	SALL1|p.G1140Wfs*35|1|0.22|ENSG00000103449|chr16:51138804-51138805|-/A|frameshift_variant;ENST00000438101.1_1_X:49431298-49432372:-|nuORF	SALL1|p.G1140Wfs*35|1|0.22|ENSG00000103449|chr16:51138804-51138805|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2811584472656	2	492.28166	982.548768	0.19364	9.5324E-05	-0.92862	-0.00045714	-0.73498	-0.00036182	492.2809489067385	76.547	0.71924	76.6	76.289	77.008	0.053413					54	25	3	0	0	0	0.057976	1	19693	19693		49.933	25.259	1	412160			51834	1835;10536	29576	29577	63559	63559					0.05679545936936847
VFPSPLPNI	9	Unmodified	_VFPSPLPNI_					0	0	0		SALL1|p.G1140Wfs*35|1|0.22|ENSG00000103449|chr16:51138804-51138805|-/A|frameshift_variant;ENSG00000103449|ENST00000251020|SALL1;SALL1|p.Q507Hfs*10|1|0.08|ENSG00000103449|chr16:51140701-51140702|-/AAGA|frameshift_variant;nc|ENSG00000103449|Q9NSC2-2|SALL1;ENST00000438101.1_1_X:49431298-49432372:-|nuORF	SALL1|p.G1140Wfs*35|1|0.22|ENSG00000103449|chr16:51138804-51138805|-/A|frameshift_variant;ENST00000438101.1_1_X:49431298-49432372:-|nuORF	SALL1|p.G1140Wfs*35|1|0.22|ENSG00000103449|chr16:51138804-51138805|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2812194824219	2	492.28166	982.548768	0.52143	0.00025669	-1.0912	-0.00053717	-0.56975	-0.00028048	492.2809118895201	76.715	1.0999	76.684	76.137	77.237	-0.031479					72	40	3	0	0	0	0.050251	1	19729	19729		71.922	39.617	1	409240			51835	1835;10536	29576	29577	63560	63560					0.05679545936936847
VFPTRTARF	9	Unmodified	_VFPTRTARF_					0	0	0		ENSG00000213339|ENST00000250237|QTRT1	ENSG00000213339|ENST00000250237|QTRT1	ENSG00000213339|ENST00000250237|QTRT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.809326171875	2	547.808908	1093.60326	0.66965	0.00036684	0.20862	0.00011429	0.87827	0.00048112	547.8089121743285	34.049	1.0219	34.049	33.753	34.775	0					91	36	4	0	0	0	0.069258	1	6685	6685		45.74	9.6957	1	1312200			51836	8339	29577	29578	63561	63561					0.060205578083468936
VFPTRTARF	9	Unmodified	_VFPTRTARF_					0	0	0		ENSG00000213339|ENST00000250237|QTRT1	ENSG00000213339|ENST00000250237|QTRT1	ENSG00000213339|ENST00000250237|QTRT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.8093872070312	2	547.808908	1093.60326	1.0008	0.00054824	-0.13948	-7.6408E-05	0.8613	0.00047183	547.8087452646537	33.852	0.94371	33.919	33.624	34.567	0.06636					101	33	4	0	0	0	0.058995	1	6621	6621		49.554	13.51	1	1349500			51837	8339	29577	29578	63562	63562					0.060205578083468936
VFPTRTARF	9	Unmodified	_VFPTRTARF_					0	0	0		ENSG00000213339|ENST00000250237|QTRT1	ENSG00000213339|ENST00000250237|QTRT1	ENSG00000213339|ENST00000250237|QTRT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8094482421875	2	547.808908	1093.60326	0.36965	0.0002025	0.45744	0.00025059	0.82709	0.00045309	547.809034015349	33.851	0.83036	33.918	33.633	34.463	0.0667					91	29	4	0	0	0	0.058995	2	6611	6611;6660		49.554	13.51	1	1422100			51838	8339	29577	29578	63563;63564	63563					0.060205578083468936
VFQDENTPF	9	Unmodified	_VFQDENTPF_					0	0	0		ENSG00000076864|ENST00000374765|RAP1GAP;nc|ENSG00000076864|P47736-2|RAP1GAP;nc|ENSG00000076864|P47736-3|RAP1GAP;nc|ENSG00000076864|P47736-4|RAP1GAP	ENSG00000076864|ENST00000374765|RAP1GAP	ENSG00000076864|ENST00000374765|RAP1GAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.307861328125	2	548.750921	1095.48729	0.6926	0.00038007	-0.52065	-0.0002857	0.17196	9.4361E-05	548.7504647908376	84.273	0.13129	84.256	84.221	84.352	-0.016823					7	5	2	0	0	0	0.2451	1	22096	22096		15.847	3.3156	1	115470			51839	1071	29578	29579	63565	63565					-0.05663430552999671
VFQDRQYQI	9	Unmodified	_VFQDRQYQI_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620-3|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000158290|Q13620|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.806640625	2	598.806562	1195.59857	0.46054	0.00027577	0.20014	0.00011985	0.66068	0.00039562	598.8066149064974	43.181	0.67424	43.181	42.871	43.545	0					60	24	4	0	0	0	0.0011116	1	9445	9445		121.35	76.939	1	972130			51840	5350;4268	29579	29580	63566	63566					0.008596288749458836
VFQDRQYQI	9	Unmodified	_VFQDRQYQI_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620-3|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000158290|Q13620|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	598.806562	1195.59857	0.42605	0.00025512	0.046076	2.7591E-05	0.47213	0.00028271	598.8064682733053	42.814	0.54207	42.899	42.648	43.19	0.085197	-0.060977	-0.00010072	NaN	121.35	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	996500			51841	5350;4268	29579	29580							0.008596288749458836
VFQDRQYQI	9	Unmodified	_VFQDRQYQI_					0	0	0		nc|ENSG00000158290|Q13620|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620-3|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000158290|Q13620|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000158290|Q13620|CUL4B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	598.806562	1195.59857	0.17906	0.00010722	0.14514	8.6911E-05	0.3242	0.00019413	598.8067088210694	42.709	0.61936	42.8	42.554	43.173	0.091362	-0.16016	1.7921E-05	NaN	121.35	54	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1014900			51842	5350;4268	29579	29580							0.008596288749458836
VFQEAANLF	9	Unmodified	_VFQEAANLF_					0	0	0		ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36;ENST00000480709.1_1_2:219554611-219557045:+|nuORF	ENSG00000163482|ENST00000295709|STK36	ENSG00000163482|ENST00000295709|STK36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.768310546875	2	519.766374	1037.5182	0.60241	0.00031311	1.1514	0.00059846	1.7538	0.00091157	519.767779404432	86.131	0.67065	86.131	85.876	86.546	0					50	26	3	0	0	0	0.023967	2	22642	22642;22695		62.573	20.733	1	412140			51843	5687	29580	29581	63567;63568	63567					0.0009376755187986419
VFQEAANLF	9	Unmodified	_VFQEAANLF_					0	0	0		ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36;ENST00000480709.1_1_2:219554611-219557045:+|nuORF	ENSG00000163482|ENST00000295709|STK36	ENSG00000163482|ENST00000295709|STK36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7678833007812	2	519.766374	1037.5182	0.46028	0.00023924	1.4842	0.00077142	1.9444	0.0010107	519.7676921666639	86.043	0.6873	86.127	85.863	86.551	0.084251					47	26	3	0	0	0	0.034444	1	22631	22631		58.679	12.979	1	494380			51844	5687	29580	29581	63569	63569					0.0009376755187986419
VFQEAANLF	9	Unmodified	_VFQEAANLF_					0	0	0		ENSG00000163482|ENST00000295709|STK36;nc|ENSG00000163482|Q9NRP7-2|STK36;ENST00000480709.1_1_2:219554611-219557045:+|nuORF	ENSG00000163482|ENST00000295709|STK36	ENSG00000163482|ENST00000295709|STK36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.767578125	2	519.766374	1037.5182	0.51805	0.00026927	1.2326	0.00064065	1.7506	0.00090992	519.7675836416964	86.13	0.63524	86.121	85.918	86.554	-0.0090027					49	24	3	0	0	0	0.051692	1	22681	22681		52.268	14.117	1	474120			51845	5687	29580	29581	63570	63570					0.0009376755187986419
VFQEALYLL	9	Unmodified	_VFQEALYLL_					0	0	0			REV__CON__P07224	REV__CON__P07224	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3078002929688	2	548.307875	1094.6012	0.42168	0.00023121	0.058916	3.2304E-05	0.48059	0.00026351	548.3079120047651	82.025	2.7322	82.093	81.65	84.382	0.068993					325	110	5	0	0	0	0.12642	1	21813	21813		34.402	3.7652	1	16639000	+	+	51846	13254	29581	29582	63571	63571					0.05768084279884533
VFQEALYLL	9	Unmodified	_VFQEALYLL_					0	0	0			REV__CON__P07224	REV__CON__P07224	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3080444335938	2	548.307875	1094.6012	0.57053	0.00031282	0.00064981	3.563E-07	0.57118	0.00031318	548.3078822551057	82.121	2.2046	82.097	81.743	83.947	-0.02404					290	90	4	0	0	0	0.051692	2	21653	21653;21705		52.268	8.4101	1	15913000	+	+	51847	13254	29581	29582	63572;63573	63572					0.05768084279884533
VFQEALYLL	9	Unmodified	_VFQEALYLL_					0	0	0			REV__CON__P07224	REV__CON__P07224	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.307861328125	2	548.307875	1094.6012	0.70987	0.00038923	-0.68229	-0.0003741	0.027586	1.5126E-05	548.3073493455245	84.187	1.5218	84.17	83.955	85.476	-0.016823					105	62	2	0	0	0	0.20881	1	22096	22096		27.629	10.516	1	381170	+	+	51848	13254	29581	29582	63574	63574					0.05768084279884533
VFQKIIML	8	Unmodified	_VFQKIIML_					0	0	0			REV__ENST00000368865.8_1_10:124923375-124923471:+|nuORF	REV__ENST00000368865.8_1_10:124923375-124923471:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.3041076660156	2	496.304081	990.59361	0.356	0.00017669	-0.097131	-4.8207E-05	0.25887	0.00012848	496.303888308668	73.998	3.3109	74.051	73.17	76.481	0.052361					303	118	4	0	0	0	0.45942	1	19097	19097		2.5775	0	1	3943000	+		51849	20349	29582	29583	63575	63575					0.09793653478641318
VFQKKSKDD	9	Unmodified	_VFQKKSKDD_					0	0	0			REV__ENSG00000085433|ENST00000369962|WDR47	REV__ENSG00000085433|ENST00000369962|WDR47	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.8218383789062	2	547.795663	1093.57677	0.38518	0.000211	2.0778	0.0011382	2.463	0.0013492	548.2969968474522	70.098	0.57053	70.098	69.703	70.273	0					32	20	2	0	0	0	0.21389	1	17692	17692		25.399	3.6527	1	116340	+		51850	13959	29583	29584	63576	63576					0.03372824126381602
VFQKKSKDD	9	Unmodified	_VFQKKSKDD_					0	0	0			REV__ENSG00000085433|ENST00000369962|WDR47	REV__ENSG00000085433|ENST00000369962|WDR47	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7650146484375	2	547.795663	1093.57677	0.72077	0.00039484	0.81314	0.00044544	1.5339	0.00084027	547.7971516521438	78.935	0.9713	78.993	78.283	79.254	0.058151					52	39	2	0	0	0	0.23784	1	20364	20364		19.257	1.1106	1	106550	+		51851	13959	29583	29584	63577	63577					0.03372824126381602
VFQLLRMR	8	Unmodified	_VFQLLRMR_					0	0	0			REV__nc|ENSG00000289720|Q96J02-3|ITCH;REV__nc|ENSG00000123124|Q9H0M0-6|WWP1	REV__nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8172607421875	2	531.815679	1061.6168	0.08187	4.354E-05	1.401	0.00074508	1.4829	0.00078862	531.8169976703119	81.396	1.1136	81.465	81.097	82.211	0.068985					184	52	6	0	0	0	0.45015	1	21114	21114		5.7604	0	1	1960300	+		51852	13861;15179	29584	29585	63578	63578					0.08846092315957321
VFQLRNKAM	9	Unmodified	_VFQLRNKAM_					0	0	0			REV__nc|ENSG00000146166|Q5TDP6-2|LGSN	REV__nc|ENSG00000146166|Q5TDP6-2|LGSN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2583618164062	2	553.810593	1105.60663	0.66159	0.0003664	-1.6076	-0.00089029	-0.94597	-0.00052389	553.8105417708083	77.364	0.35821	77.333	77.045	77.404	-0.031334					14	12	2	0	0	0	0.25202	1	19889	19889		6.7232	2.3939	1	90704	+		51853	16332	29585	29586	63579	63579					0.05805484590700871
VFQPKSLEF	9	Unmodified	_VFQPKSLEF_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7981567382812	2	547.797675	1093.5808	0.53242	0.00029166	-0.35401	-0.00019393	0.17841	9.7732E-05	547.7980800314615	55.21	3.0927	55.21	54.811	57.904	0					325	113	6	0	0	0	5.4053E-05	8	13144	13099;13144;13193;13243;13295;13344;13390;13844		148.27	90.797	1	101510000			51854	2100	29586	29587	63580;63581;63582;63583;63584;63585;63586;63587	63581					0.03774913620100051
VFQPKSLEF	9	Unmodified	_VFQPKSLEF_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3133544921875	2	547.797675	1093.5808	0.4856	0.00026601	0.52086	0.00028533	1.0065	0.00055134	547.7975744968578	58.723	1.7191	58.723	57.634	59.353	0					126	60	4	0	0	0	0.034444	1	14299	14299		58.679	18.721	1	956340			51855	2100	29586	29587	63588	63588					0.03774913620100051
VFQPKSLEF	9	Unmodified	_VFQPKSLEF_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.779541015625	2	547.797675	1093.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.465	1	80.465	79.965	80.965	0								0	0	0	0.22933	1	20915	20915		13.042	0.80181	1				51856	2100	29586	29587	63589	63589					0.03774913620100051
VFQPKSLEF	9	Unmodified	_VFQPKSLEF_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.8342895507812	2	547.797675	1093.5808	0.40544	0.0002221	-3.4529	-0.0018915	-3.0475	-0.0016694	548.2961056812649	69.019	0.86329	69.019	68.592	69.455	0					54	30	3	0	0	0	0.24289	1	17319	17319		18.146	3.3081	1	298110			51857	2100	29586	29587	63590	63590					0.03774913620100051
VFQPKSLEF	9	Unmodified	_VFQPKSLEF_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.332275390625	2	547.797675	1093.5808	0.51771	0.0002836	-2.6286	-0.00144	-2.1109	-0.0011564	547.7982321272608	89.51	0.44547	89.51	89.253	89.698	0					36	26	2	0	0	0	0.25202	1	23630	23630		10.824	2.2306	1	48092			51858	2100	29586	29587	63591	63591					0.03774913620100051
VFQPKSLEF	9	Unmodified	_VFQPKSLEF_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.3169555664062	2	547.797675	1093.5808	0.41709	0.00022848	-1.7956	-0.00098365	-1.3786	-0.00075517	547.7977868948861	65.275	1.5808	65.275	64.079	65.66	0					113	57	2	0	0	0	0.20881	1	16286	16286		27.629	4.4804	1	358820			51859	2100	29586	29587	63592	63592					0.03774913620100051
VFQPKSLEF	9	Unmodified	_VFQPKSLEF_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7468872070312	2	547.797675	1093.5808	0.51804	0.00028378	1.341	0.00073462	1.8591	0.0010184	547.797572998752	76.854	1.0833	76.854	76.283	77.366	0					94	39	5	0	0	0	0.24289	1	19767	19767		18.146	1.0335	1	1373400			51860	2100	29586	29587	63593	63593					0.03774913620100051
VFQPKSLEF	9	Unmodified	_VFQPKSLEF_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7982788085938	2	547.797675	1093.5808	0.77656	0.0004254	-0.56629	-0.00031021	0.21027	0.00011518	547.7979411184083	55.131	2.9611	55.202	54.812	57.773	0.070885					310	109	5	0	0	0	4.984E-07	7	13119	13074;13119;13167;13214;13260;13304;13804		160.69	95.455	1	102540000			51861	2100	29586	29587	63594;63595;63596;63597;63598;63599;63600	63595					0.03774913620100051
VFQPKSLEF	9	Unmodified	_VFQPKSLEF_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7973022460938	2	547.797675	1093.5808	0.56189	0.0003078	0.25596	0.00014021	0.81785	0.00044801	547.797657407968	58.467	1.8545	58.558	57.72	59.574	0.091301					134	66	4	0	0	0	0.069366	2	14150	14150;14246		45.7	15.063	1	1014400			51862	2100	29586	29587	63601;63602	63601					0.03774913620100051
VFQPKSLEF	9	Unmodified	_VFQPKSLEF_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7796630859375	2	547.797675	1093.5808	0.43878	0.00024036	-3.1303	-0.0017148	-2.6915	-0.0014744	547.7970258887862	80.31	0.27986	80.375	80.241	80.52	0.065102					16	10	2	0	0	0	0.23235	1	20827	20827		21.537	2.28	1	114680			51863	2100	29586	29587	63603	63603					0.03774913620100051
VFQPKSLEF	9	Unmodified	_VFQPKSLEF_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.8342895507812	2	547.797675	1093.5808	0.5759	0.00031548	-3.0497	-0.0016706	-2.4738	-0.0013551	548.2958616002059	68.693	0.92867	68.765	68.536	69.465	0.071938					45	33	2	0	0	0	0.20881	1	17347	17347		27.629	7.1752	1	187930			51864	2100	29586	29587	63604	63604					0.03774913620100051
VFQPKSLEF	9	Unmodified	_VFQPKSLEF_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.798095703125	2	547.797675	1093.5808	0.59614	0.00032656	-0.37884	-0.00020753	0.21731	0.00011904	547.7980953369529	55.371	2.8167	55.352	54.897	57.714	-0.019077					304	103	6	0	0	0	5.4053E-05	7	13178	13130;13178;13225;13274;13323;13373;13477		148.27	88.046	1	112170000			51865	2100	29586	29587	63605;63606;63607;63608;63609;63610;63611	63606					0.03774913620100051
VFQPKSLEF	9	Unmodified	_VFQPKSLEF_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7647094726562	2	547.797675	1093.5808	0.62182	0.00034063	-1.8313	-0.0010032	-1.2095	-0.00066257	547.7973423608555	73.009	1.8991	72.98	71.871	73.77	-0.029305					114	68	3	0	0	0	0.1939	1	18656	18656		30.637	1.555	1	279760			51866	2100	29586	29587	63612	63612					0.03774913620100051
VFQPKSLEF	9	Unmodified	_VFQPKSLEF_					0	0	0		nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	nc|ENSG00000106772|Q8WUY3-4|PRUNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7470092773438	2	547.797675	1093.5808	0.7701	0.00042186	0.19199	0.00010517	0.9621	0.00052704	547.797470319828	76.954	1.0875	76.923	76.395	77.482	-0.031334					74	39	3	0	0	0	0.24289	1	19769	19769		18.146	1.0335	1	1338300			51867	2100	29586	29587	63613	63613					0.03774913620100051
VFQQLENIL	9	Unmodified	_VFQQLENIL_					0	0	0		nc|ENSG00000184719|Q5VYX0-2|RNLS;ENSG00000184719|ENST00000331772|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8165893554688	2	552.308406	1102.60226	0.40683	0.00022469	0.14929	8.2456E-05	0.55612	0.00030715	552.3065960595459	56.959	0.53578	57.038	56.829	57.365	0.078674					28	19	2	0	0	0	0.24311	1	13803	13803		16.942	6.1184	1	167910			51868	7469	29587	29588	63614	63614					0.055062986488110255
VFQQLENIL	9	Unmodified	_VFQQLENIL_					0	0	0		nc|ENSG00000184719|Q5VYX0-2|RNLS;ENSG00000184719|ENST00000331772|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	nc|ENSG00000184719|Q5VYX0-2|RNLS	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	552.308406	1102.60226	0.49329	0.00027245	1.1449	0.00063234	1.6382	0.00090479	552.3070946882677	57.124	0.41262	57.124	56.937	57.35	0	0.043118	0.00055786	NaN	16.942	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193460			51869	7469	29587	29588							0.055062986488110255
VFQQSSRGEN	10	Unmodified	_VFQQSSRGEN_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8430786132812	2	576.275626	1150.5367	0.45878	0.00026439	1.8535	0.0010681	2.3122	0.0013325	576.2768449147885	84.79	0.60049	84.79	84.497	85.098	0					42	22	3	0	0	0	0.31581	1	22258	22258		2.2828	0	1	244560			51870	2548	29588	29589	63615	63615					-0.03254722544170363
VFQQYVEF	8	Unmodified	_VFQQYVEF_					0	0	0			REV__nc|ENSG00000003137|Q9NR63-2|CYP26B1	REV__nc|ENSG00000003137|Q9NR63-2|CYP26B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2796020507812	2	530.260925	1058.5073	0.34762	0.00018433	-0.4236	-0.00022462	-0.075981	-4.029E-05	530.2608205174454	67.428	0.16058	67.411	67.262	67.423	-0.016296					6	4	2	0	0	0	0.42758	1	16916	16916		13.508	0.97634	1	69263	+		51871	13323	29589	29590	63616	63616					-0.019616348223962632
VFQRLVIT	8	Unmodified	_VFQRLVIT_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2853088378906	2	488.302927	974.591301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.13	1	114.13	113.63	114.63	0								0	0	0	0.37183	1	29621	29621		4.756	0	1				51872	3321	29590	29591	63617	63617					0.10298941065184408
VFQRLVIT	8	Unmodified	_VFQRLVIT_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2854309082031	2	488.302927	974.591301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.58	1	116.58	116.08	117.08	0								0	0	0	0.37724	1	30173	30173		2.3027	0	1				51873	3321	29590	29591	63618	63618					0.10298941065184408
VFQRLVIT	8	Unmodified	_VFQRLVIT_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.28533935546875	2	488.302927	974.591301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.84	1	116.84	116.34	117.34	0								0	0	0	0.37724	1	30236	30236		2.3027	0	1				51874	3321	29590	29591	63619	63619					0.10298941065184408
VFQRLVIT	8	Unmodified	_VFQRLVIT_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.8000793457031	2	488.302927	974.591301	0.53676	0.0002621	-2.3173	-0.0011315	-1.7805	-0.00086944	488.3017109851486	84.278	0.63672	84.278	84.109	84.746	0					41	23	3	0	0	0	0.3366	1	22168	22168		12.532	0	1	271350			51875	3321	29590	29591	63620	63620					0.10298941065184408
VFQRLVIT	8	Unmodified	_VFQRLVIT_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.28515625	2	488.302927	974.591301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.6	1	113.58	113.08	114.08	-0.017303								0	0	0	0.37724	1	29525	29525		2.3027	0	1				51876	3321	29590	29591	63621	63621					0.10298941065184408
VFQRLVIT	8	Unmodified	_VFQRLVIT_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2854919433594	2	488.302927	974.591301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.49	1	116.51	116.01	117.01	0.020988								0	0	0	0.37724	1	30223	30223		2.3027	0	1				51877	3321	29590	29591	63622	63622					0.10298941065184408
VFQRLVIT	8	Unmodified	_VFQRLVIT_					0	0	0		UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	UBR4|p.Q4684Hfs*5|1|0.26|ENSG00000127481|chr1:19093351-19093372|TGCATTCTGGGTGATCCCCTTC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2853698730469	2	488.302927	974.591301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.99	1	117.01	116.51	117.51	0.020988								0	0	0	0.37724	1	30341	30341		2.3027	0	1				51878	3321	29590	29591	63623	63623					0.10298941065184408
VFQSKNAW	8	Unmodified	_VFQSKNAW_					0	0	0		ENST00000534639.1_1_11:43284362-43284860:-|nuORF	ENST00000534639.1_1_11:43284362-43284860:-|nuORF	ENST00000534639.1_1_11:43284362-43284860:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.30108642578125	2	490.253434	978.492316	0.34134	0.00016734	-0.73338	-0.00035954	-0.39203	-0.0001922	490.25270975096794	55.52	0.34169	55.501	55.408	55.75	-0.019081					18	12	2	0	0	0	0.28769	1	13269	13269		37.974	3.8716	1	176030			51879	11662	29591	29592	63624	63624					0.002209181002854166
VFQSKNAW	8	Unmodified	_VFQSKNAW_					0	0	0		ENST00000534639.1_1_11:43284362-43284860:-|nuORF	ENST00000534639.1_1_11:43284362-43284860:-|nuORF	ENST00000534639.1_1_11:43284362-43284860:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	490.253434	978.492316	0.54585	0.0002676	-0.74624	-0.00036585	-0.20039	-9.8242E-05	490.2526086040325	55.231	0.37067	55.302	55.164	55.535	0.070885	-0.099508	-5.2574E-06	NaN	37.974	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205690			51880	11662	29591	29592							0.002209181002854166
VFQVQAMNS	9	Unmodified	_VFQVQAMNS_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2492065429688	2	512.250034	1022.48552	0.30138	0.00015438	-1.2598	-0.00064531	-0.95839	-0.00049093	512.2491954684448	80.012	0.55219	80.012	79.77	80.322	0					50	19	3	0	0	0	0.13748	1	20777	20777		32.786	2.1491	1	416910			51881	4458	29592	29593	63625	63625					-0.024827628425896364
VFQVQAMNS	9	Unmodified	_VFQVQAMNS_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2492065429688	2	512.250034	1022.48552	0.23395	0.00011984	-1.0823	-0.00055439	-0.84832	-0.00043455	512.2492394526738	80.053	0.69719	80.024	79.776	80.473	-0.028931					53	23	3	0	0	0	0.13748	1	20777	20777		32.786	5.902	1	452970			51882	4458	29592	29593	63626	63626					-0.024827628425896364
VFQVQAMNS	9	Unmodified	_VFQVQAMNS_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	512.250034	1022.48552	0.30138	0.00015438	-1.2598	-0.00064531	-0.95839	-0.00049093	512.2491954684448	80.012	0.55219	80.012	79.77	80.322	0	0.0012336	3.7896E-05	NaN	32.786	50	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	416910			51883	4458	29592	29593							-0.024827628425896364
VFQVQAMNS	9	Unmodified	_VFQVQAMNS_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	512.250034	1022.48552	0.24216	0.00012405	-1.5231	-0.0007802	-1.2809	-0.00065615	512.2492083828972	79.935	0.71382	79.997	79.749	80.463	0.061409	-0.014434	-0.00023187	NaN	32.786	74	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	468720			51884	4458	29592	29593							-0.024827628425896364
VFQVQAMNS	9	Unmodified	_VFQVQAMNS_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	512.250034	1022.48552	0.23395	0.00011984	-1.0823	-0.00055439	-0.84832	-0.00043455	512.2492394526738	80.053	0.69719	80.024	79.776	80.473	-0.028931	0.0132	0.00021974	NaN	32.786	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	452970			51885	4458	29592	29593							-0.024827628425896364
VFRAGSCF	8	Unmodified	_VFRAGSCF_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.7155456542969	2	443.71563	885.416708	0.25852	0.00011471	0.094516	4.1938E-05	0.35303	0.00015665	443.71552306084135	31.882	2.14	31.924	31.347	33.487	0.042364					125	76	3	0	0	0	0.37937	1	6091	6091		21.747	0	1	8664300			51886	7983	29593	29594	63627	63627					-0.03058382351639466
VFRAGSCF	8	Unmodified	_VFRAGSCF_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.71563720703125	2	443.71563	885.416708	0.29895	0.00013265	0.02813	1.2482E-05	0.32708	0.00014513	443.7155021479725	31.868	1.53	31.909	31.772	33.302	0.040989					111	54	3	0	0	0	0.37937	2	5976	5976;6074		21.747	0	1	6508100			51887	7983	29593	29594	63628;63629	63628					-0.03058382351639466
VFRKTILS	8	Unmodified	_VFRKTILS_					0	0	0		ENST00000416538.5_1_2:136511667-136511706:+|nuORF	ENST00000416538.5_1_2:136511667-136511706:+|nuORF	ENST00000416538.5_1_2:136511667-136511706:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.3033752441406	2	482.302927	962.591301	0.70796	0.00034145	0.13036	6.2874E-05	0.83832	0.00040432	482.30286207280335	50.804	0.69268	50.813	50.402	51.094	0.0095634					78	25	4	0	0	0	0.27124	1	11852	11852		34.102	5.6156	1	2573400			51888	10319	29594	29595	63630	63630					0.10850941065200459
VFRLQFDEF	9	Unmodified	_VFRLQFDEF_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.8060913085938	2	600.806031	1199.59751	0.54035	0.00032464	0.94042	0.00056501	1.4808	0.00088966	600.8059186086671	71.644	1.8978	71.644	71.183	73.081	0					276	68	6	0	0	0	2.4752E-08	3	18203	18203;18252;18314		179.17	125.77	1	3484500			51889	989	29595	29596	63631;63632;63633	63631					0.005694145060488154
VFRLQFDEF	9	Unmodified	_VFRLQFDEF_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.8059692382812	2	600.806031	1199.59751	0.53084	0.00031893	0.93165	0.00055974	1.4625	0.00087868	600.8059104074641	71.586	2.0277	71.643	71.04	73.068	0.056572					261	73	6	0	0	0	2.4752E-08	3	18172	18172;18214;18267		179.17	137.22	1	4156400			51890	989	29595	29596	63634;63635;63636	63634					0.005694145060488154
VFRLQFDEF	9	Unmodified	_VFRLQFDEF_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8062744140625	2	600.806031	1199.59751	0.46535	0.00027958	0.89549	0.00053801	1.3608	0.0008176	600.8059824047092	71.712	2.0009	71.684	71.074	73.075	-0.027275					287	71	6	0	0	0	2.4752E-08	3	18213	18213;18254;18304		179.17	117.57	1	5216000			51891	989	29595	29596	63637;63638;63639	63637					0.005694145060488154
VFRLTVRNA	9	Unmodified	_VFRLTVRNA_					0	0	0		ENST00000531325.5_1_1:85403252-85462600:-|nuORF;ENSG00000153898|ENST00000370608|MCOLN2	ENST00000531325.5_1_1:85403252-85462600:-|nuORF	ENST00000531325.5_1_1:85403252-85462600:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7531127929688	2	538.322183	1074.62981	0.42816	0.00023049	-2.2678	-0.0012208	-1.8396	-0.00099031	538.3221882052185	69.293	0.083511	69.271	69.209	69.293	-0.022079					4	2	2	0	0	0	0.24913	1	17483	17483		12.532	0.89125	1	45724			51892	5091	29596	29597	63640	63640					0.09548246699705487
VFRQILLRT	9	Unmodified	_VFRQILLRT_					0	0	0			REV__ENST00000416579.5_1_2:73200539-73298852:-|nuORF	REV__ENST00000416579.5_1_2:73200539-73298852:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.83544921875	2	573.361308	1144.70806	0.42468	0.00024349	0.17654	0.00010122	0.60122	0.00034472	573.3612705370831	46.789	0.48478	46.844	46.657	47.142	0.054375					27	16	3	0	0	0	0.25202	1	10650	10650		10.824	4.1008	1	416350	+		51893	16218	29597	29598	63641	63641					0.14149679284946615
VFSDKGDYF	9	Unmodified	_VFSDKGDYF_					0	0	0		ENSG00000141469|ENST00000321925|SLC14A1;nc|ENSG00000141469|Q13336-2|SLC14A1	ENSG00000141469|ENST00000321925|SLC14A1	ENSG00000141469|ENST00000321925|SLC14A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7926025390625	2	539.248015	1076.48148	0.49905	0.00026911	0.016995	9.1646E-06	0.51604	0.00027828	539.247748759452	70.979	0.47378	70.979	70.683	71.157	0					25	16	2	0	0	0	0.18123	1	17994	17994		27.629	0	1	411250			51894	4384	29598	29599	63642	63642					-0.053705290646803405
VFSFERWNL	9	Unmodified	_VFSFERWNL_					0	0	0			REV__nc|ENSG00000115107|Q658P3-4|STEAP3	REV__nc|ENSG00000115107|Q658P3-4|STEAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.7454223632812	2	599.306198	1196.59784	0.52974	0.00031748	-0.80484	-0.00048234	-0.2751	-0.00016487	599.3053644398626	68.148	0.28709	68.222	68.018	68.305	0.073166					13	9	2	0	0	0	0.25202	1	17143	17143		10.824	6.0679	1	149030	+		51895	14862	29599	29600	63643	63643					0.007408342259168421
VFSFILVTT	9	Unmodified	_VFSFILVTT_					0	0	0		ENSG00000104760|ENST00000427924|FGL1	ENSG00000104760|ENST00000427924|FGL1	ENSG00000104760|ENST00000427924|FGL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7586669921875	2	513.797143	1025.57973	-0.029701	-1.526E-05	0.52121	0.0002678	0.49151	0.00025254	513.7974763602277	25.65	0.83312	25.594	25.219	26.052	-0.055931					37	28	2	0	0	0	0.25988	1	4142	4142		3.9444	1.6417	1	92713			51896	1912	29600	29601	63644	63644					0.06796699251208338
VFSLSTLPPR	10	Unmodified	_VFSLSTLPPR_					0	0	0			REV__ENST00000393614.8_1_1:110527389-110528040:+|nuORF	REV__ENST00000393614.8_1_1:110527389-110528040:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3631591796875	2	558.824224	1115.63389	0.36299	0.00020285	-0.83163	-0.00046473	-0.46864	-0.00026189	559.3250273487571	71.692	0.1879	71.748	71.68	71.868	0.056572					8	6	2	0	0	0	0.30079	1	18226	18226		20.454	3.5113	1	68465	+		51897	20609	29601	29602	63645	63645					0.08070291402736984
VFSLSVMAFD	10	Unmodified	_VFSLSVMAFD_					0	0	0		ENSG00000172742|ENST00000641962|OR4D9	ENSG00000172742|ENST00000641962|OR4D9	ENSG00000172742|ENST00000641962|OR4D9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3632202148438	2	558.275718	1114.53688	0.34423	0.00019217	-0.13026	-7.2722E-05	0.21397	0.00011945	558.2759563435402	72.053	0.79575	72.026	71.602	72.398	-0.027275					55	28	3	0	0	0	0.31165	1	18250	18250		15.847	1.0089	1	511060			51898	6659	29602	29603	63646	63646					-0.01580438868541023
VFSTDAGFHF	10	Unmodified	_VFSTDAGFHF_					0	0	0		ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	ENSG00000150093|ENST00000302278|ITGB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.3208618164062	2	564.261456	1126.50836	0.14696	8.2922E-05	1.5844	0.00089402	1.7314	0.00097694	564.262694019387	62.1	0.21156	62.092	61.955	62.167	-0.0085564					10	7	2	0	0	0	0.31267	1	15313	15313		14.838	4.7643	1	111550			51899	4903	29603	29604	63647	63647					-0.049834204534590754
VFSTVVIHF	9	Unmodified	_VFSTVVIHF_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2971801757812	2	524.794935	1047.57532	0.4972	0.00026093	0.75057	0.0003939	1.2478	0.00065482	525.2969370786893	67.466	0.92136	67.466	67.076	67.997	0					77	31	3	0	0	0	0.00010798	5	16920	16920;16979;17018;17023;17040		139.54	99.587	1	4060000			51900	2476	29604	29605	63648;63649;63650;63651;63652	63648					0.05343234828274035
VFSTVVIHF	9	Unmodified	_VFSTVVIHF_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7952880859375	2	524.794935	1047.57532	0.48	0.0002519	0.8366	0.00043904	1.3166	0.00069094	525.2969288284472	67.343	0.87762	67.421	67.122	68	0.078041					79	30	3	0	0	0	1.576E-05	2	16933	16933;16996		154.46	114.51	1	4259000			51901	2476	29604	29605	63653;63654	63653					0.05343234828274035
VFSTVVIHF	9	Unmodified	_VFSTVVIHF_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.29736328125	2	524.794935	1047.57532	0.38804	0.00020364	0.98616	0.00051753	1.3742	0.00072117	525.2970005650244	67.436	0.75587	67.42	67.115	67.871	-0.016296					70	25	3	0	0	0	0.00010798	4	16913	16913;16944;16989;17028		139.54	99.587	1	3867000			51902	2476	29604	29605	63655;63656;63657;63658	63655					0.05343234828274035
VFSVDSFRLL	10	Unmodified	_VFSVDSFRLL_					0	0	0			REV__ENST00000393066.7_1_17:57168694-57181751:-|nuORF	REV__ENST00000393066.7_1_17:57168694-57181751:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.2633056640625	2	591.829506	1181.64446	0.43982	0.0002603	-0.50889	-0.00030118	-0.069072	-4.0879E-05	591.8291007402097	68.336	1.5562	68.336	67.842	69.398	0					81	56	2	0	0	0	0.3144	1	17193	17193		13.042	2.2185	1	279310	+		51903	20601	29605	29606	63659	63659					0.060902740572146286
VFSWVYNIF	9	Unmodified	_VFSWVYNIF_					0	0	0			REV__ENST00000263969.9_1_3:179104222-179104291:+|nuORF	REV__ENST00000263969.9_1_3:179104222-179104291:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.2900390625	2	587.800217	1173.58588	0.66759	0.00039241	-3.625	-0.0021308	-2.9574	-0.0017384	587.7978760634674	55.828	0.48962	55.809	55.588	56.078	-0.019081					26	17	2	0	0	0	0.20651	1	13403	13403		20.454	0	1	570780	+		51904	19629	29606	29607	63660	63660					0.0060321748269416275
VFSYDKVQTT	10	Unmodified	_VFSYDKVQTT_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.302001953125	2	594.300778	1186.587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.24	1	104.24	103.74	104.74	0.0018463								0	0	0	0.37044	1	27691	27691		6.2058	0.9089	1		+		51905	17073	29607	29608	63661	63661					0.001173870609363803
VFSYGKDPF	9	Unmodified	_VFSYGKDPF_					0	0	0			REV__ENST00000477415.5_1_2:70443338-70451751:-|nuORF	REV__ENST00000477415.5_1_2:70443338-70451751:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.26123046875	2	530.260925	1058.5073	0.82885	0.00043951	-0.17232	-9.1374E-05	0.65654	0.00034814	530.2608309869217	50.661	2.8438	50.661	49.953	52.797	0					306	104	5	0	0	0	0.11461	1	11609	11609		36.127	4.0895	1	10736000	+		51906	14906	29608	29609	63662	63662					-0.019616348223962632
VFSYGKDPF	9	Unmodified	_VFSYGKDPF_					0	0	0			REV__ENST00000477415.5_1_2:70443338-70451751:-|nuORF	REV__ENST00000477415.5_1_2:70443338-70451751:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2608032226562	2	530.260925	1058.5073	0.78189	0.00041461	-0.15567	-8.2545E-05	0.62622	0.00033206	530.2608350674723	50.566	3.1269	50.611	49.905	53.032	0.044891					314	115	5	0	0	0	0.07432	1	11593	11593		43.858	1.9027	1	10120000	+		51907	14906	29608	29609	63663	63663					-0.019616348223962632
VFSYGKDPF	9	Unmodified	_VFSYGKDPF_					0	0	0			REV__ENST00000477415.5_1_2:70443338-70451751:-|nuORF	REV__ENST00000477415.5_1_2:70443338-70451751:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2962646484375	2	530.260925	1058.5073	0.0045222	2.398E-06	0.97092	0.00051484	0.97544	0.00051724	530.2613907936301	60.284	0.4193	60.379	60.131	60.55	0.095093					25	15	2	0	0	0	0.23784	1	14755	14755		19.257	4.6753	1	525380	+		51908	14906	29608	29609	63664	63664					-0.019616348223962632
VFSYGKEPF	9	Unmodified	_VFSYGKEPF_					0	0	0			REV__ENST00000497671.5_1_10:121335179-121339984:-|nuORF	REV__ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.25244140625	2	537.26875	1072.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.042	1	81.042	80.542	81.542	0								0	0	0	0.14428	1	21092	21092		36.044	7.5574	1		+		51909	16562	29609	29610	63665	63665					-0.010413483053298478
VFSYGKEPF	9	Unmodified	_VFSYGKEPF_					0	0	0			REV__ENST00000497671.5_1_10:121335179-121339984:-|nuORF	REV__ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2526245117188	2	537.26875	1072.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.206	1	81.206	80.706	81.706	0								0	0	0	0.19804	1	21142	21142		23.148	1.4018	1		+		51910	16562	29609	29610	63666	63666					-0.010413483053298478
VFSYGKEPF	9	Unmodified	_VFSYGKEPF_					0	0	0			REV__ENST00000497671.5_1_10:121335179-121339984:-|nuORF	REV__ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2529296875	2	537.26875	1072.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.38	1	81.38	80.88	81.88	0								0	0	0	0.21726	1	21196	21196		16.942	0	1		+		51911	16562	29609	29610	63667	63667					-0.010413483053298478
VFSYGKEPF	9	Unmodified	_VFSYGKEPF_					0	0	0			REV__ENST00000497671.5_1_10:121335179-121339984:-|nuORF	REV__ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2680053710938	2	537.26875	1072.52295	0.57713	0.00031007	-0.099962	-5.3706E-05	0.47717	0.00025637	537.2688561844116	49.457	4.527	49.489	48.632	53.159	0.032043					533	167	5	0	0	0	0.22188	1	11170	11170		20.454	2.3073	1	20801000	+		51912	16562	29609	29610	63668	63668					-0.010413483053298478
VFTDGDLG	8	Unmodified	_VFTDGDLG_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2679748535156	2	412.195251	822.375948	0.26187	0.00010794	-3.6855	-0.0015191	-3.4236	-0.0014112	412.1954700663889	75.644	0.80785	75.612	75.184	75.992	-0.031487					72	29	4	0	0	0	0.34297	1	19521	19521		6.3541	0	1	231620			51913	3625	29610	29611	63669	63669					-0.042344451902749825
VFTDPKQIF	9	Unmodified	_VFTDPKQIF_					0	0	0		ENSG00000123610|ENST00000243347|TNFAIP6	ENSG00000123610|ENST00000243347|TNFAIP6	ENSG00000123610|ENST00000243347|TNFAIP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3079223632812	2	547.797675	1093.5808	0.64647	0.00035413	-2.9933	-0.0016397	-2.3469	-0.0012856	547.7975514000503	82.695	0.93646	82.769	82.627	83.564	0.073097					42	35	2	0	0	0	0.18803	1	21665	21665		25.399	8.457	1	119300			51914	3118	29611	29612	63670	63670					0.03774913620077314
VFTDPKQIF	9	Unmodified	_VFTDPKQIF_					0	0	0		ENSG00000123610|ENST00000243347|TNFAIP6	ENSG00000123610|ENST00000243347|TNFAIP6	ENSG00000123610|ENST00000243347|TNFAIP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.345947265625	2	547.797675	1093.5808	0.73124	0.00040057	-4.0348	-0.0022102	-3.3035	-0.0018097	548.29476881791	85.183	0.65368	85.264	84.935	85.589	0.080887					32	25	2	0	0	0	0.23784	1	22302	22302		19.257	1.1106	1	112800			51915	3118	29611	29612	63671	63671					0.03774913620077314
VFTDPKQIF	9	Unmodified	_VFTDPKQIF_					0	0	0		ENSG00000123610|ENST00000243347|TNFAIP6	ENSG00000123610|ENST00000243347|TNFAIP6	ENSG00000123610|ENST00000243347|TNFAIP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.78076171875	2	547.797675	1093.5808	0.55172	0.00030223	-2.6676	-0.0014613	-2.1158	-0.0011591	548.2964948534984	67.213	1.6698	67.291	66.899	68.569	0.078041					111	59	3	0	0	0	0.23784	1	16969	16969		19.257	1.1106	1	210550			51916	3118	29611	29612	63672	63672					0.03774913620077314
VFTDPKQIF	9	Unmodified	_VFTDPKQIF_					0	0	0		ENSG00000123610|ENST00000243347|TNFAIP6	ENSG00000123610|ENST00000243347|TNFAIP6	ENSG00000123610|ENST00000243347|TNFAIP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8341674804688	2	547.797675	1093.5808	0.53334	0.00029216	-1.7987	-0.00098535	-1.2654	-0.00069319	547.7981238167512	68.524	1.313	68.505	68.068	69.381	-0.019157					68	46	2	0	0	0	0.1854	1	17369	17369		32.305	8.2849	1	183980			51917	3118	29611	29612	63673	63673					0.03774913620077314
VFTDPKQIF	9	Unmodified	_VFTDPKQIF_					0	0	0		ENSG00000123610|ENST00000243347|TNFAIP6	ENSG00000123610|ENST00000243347|TNFAIP6	ENSG00000123610|ENST00000243347|TNFAIP6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	547.797675	1093.5808	0.43735	0.00023958	-1.2121	-0.00066401	-0.77479	-0.00042443	548.2966989007883	68.42	0.54439	68.42	68.048	68.592	0	-0.042662	0.00042364	NaN	32.305	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207350			51918	3118	29611	29612							0.03774913620077314
VFTDPKQIF	9	Unmodified	_VFTDPKQIF_					0	0	0		ENSG00000123610|ENST00000243347|TNFAIP6	ENSG00000123610|ENST00000243347|TNFAIP6	ENSG00000123610|ENST00000243347|TNFAIP6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	547.797675	1093.5808	0.37799	0.00020706	-1.5751	-0.00086285	-1.1971	-0.00065579	548.296888068949	67.146	1.3817	67.13	66.403	67.785	-0.016296	-0.08082	0.00074363	NaN	19.257	82	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313270			51919	3118	29611	29612							0.03774913620077314
VFTEVANLF	9	Unmodified	_VFTEVANLF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant;nc|ENSG00000127511|O75182-3|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2766723632812	2	520.276575	1038.5386	0.40676	0.00021163	-0.3475	-0.0001808	0.059263	3.0833E-05	520.2763303152608	80.874	3.1032	80.874	80.097	83.2	0					283	126	5	0	0	0	3.2167E-17	5	21082	20997;21044;21082;21130;21176		222.91	137.63	1	6954600			51920	3324	29612	29613	63674;63675;63676;63677;63678	63676					0.020869382116870838
VFTEVANLF	9	Unmodified	_VFTEVANLF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant;nc|ENSG00000127511|O75182-3|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2758178710938	2	520.276575	1038.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.328	1	84.328	83.828	84.828	0								0	0	0	0.21353	1	22101	22101		18.146	3.3081	1				51921	3324	29612	29613	63679	63679					0.020869382116870838
VFTEVANLF	9	Unmodified	_VFTEVANLF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant;nc|ENSG00000127511|O75182-3|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2767333984375	2	520.276575	1038.5386	0.16067	8.359E-05	-0.083934	-4.3669E-05	0.076731	3.9922E-05	520.2764695008022	80.811	2.8405	80.876	79.339	82.179	0.065094					281	121	5	0	0	0	3.2167E-17	5	21035	20950;20992;21035;21076;21117		222.91	137.63	1	8036200			51922	3324	29612	29613	63680;63681;63682;63683;63684	63682					0.020869382116870838
VFTEVANLF	9	Unmodified	_VFTEVANLF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant;nc|ENSG00000127511|O75182-3|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2758178710938	2	520.276575	1038.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.31	1	83.383	82.883	83.883	0.073097								0	0	0	0.15832	1	21781	21781		32.786	8.7651	1				51923	3324	29612	29613	63685	63685					0.020869382116870838
VFTEVANLF	9	Unmodified	_VFTEVANLF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant;nc|ENSG00000127511|O75182-3|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2765502929688	2	520.276575	1038.5386	0.37807	0.0001967	-0.40582	-0.00021114	-0.027754	-1.444E-05	520.2762616952652	80.955	4.5903	80.928	79.398	83.988	-0.026825					299	185	3	0	0	0	3.2167E-17	7	21026	20977;21026;21072;21118;21166;21371;21837		222.91	137.63	1	7051300			51924	3324	29612	29613	63686;63687;63688;63689;63690;63691;63692	63687					0.020869382116870838
VFTEVANLF	9	Unmodified	_VFTEVANLF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.P553Rfs*19|1|0.19|ENSG00000127511|chr19:16865585-16865585|C/-|frameshift_variant;nc|ENSG00000127511|O75182-3|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2753295898438	2	520.276575	1038.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.095	1	84.078	83.578	84.578	-0.016823								0	0	0	0.14393	1	22017	22017		36.127	9.2434	1				51925	3324	29612	29613	63693	63693					0.020869382116870838
VFTEVGEGVTF	11	Unmodified	_VFTEVGEGVTF_					0	0	0		nc|ENSG00000086200|Q9UI26-2|IPO11;ENSG00000086200|ENST00000325324|IPO11;ENST00000507640.1_1_5:61778930-61779155:+|nuORF	nc|ENSG00000086200|Q9UI26-2|IPO11	nc|ENSG00000086200|Q9UI26-2|IPO11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.7454833984375	2	592.795329	1183.5761	0.39683	0.00023524	-1.4715	-0.00087229	-1.0747	-0.00063705	592.7926316261107	69.924	0.83935	69.924	69.566	70.406	0					72	30	4	0	0	0	0.28652	1	17710	17710		29.841	10.402	1	276600			51926	1278	29613	29614	63694	63694					-0.00834015313330383
VFTEVGEGVTF	11	Unmodified	_VFTEVGEGVTF_					0	0	0		nc|ENSG00000086200|Q9UI26-2|IPO11;ENSG00000086200|ENST00000325324|IPO11;ENST00000507640.1_1_5:61778930-61779155:+|nuORF	nc|ENSG00000086200|Q9UI26-2|IPO11	nc|ENSG00000086200|Q9UI26-2|IPO11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.7454223632812	2	592.795329	1183.5761	0.36972	0.00021917	-1.2022	-0.00071268	-0.83251	-0.00049351	592.7928853415434	69.951	0.58102	70.017	69.692	70.273	0.066048					55	20	4	0	0	0	0.32231	1	17693	17693		14.405	3.6059	1	313630			51927	1278	29613	29614	63695	63695					-0.00834015313330383
VFTFNIKDI	9	Unmodified	_VFTFNIKDI_					0	0	0		nc|ENSG00000175471|Q6DN14-5|MCTP1;nc|ENSG00000175471|Q6DN14-4|MCTP1;nc|ENSG00000175471|Q6DN14-3|MCTP1;nc|ENSG00000175471|Q6DN14-2|MCTP1;ENSG00000175471|ENST00000515393|MCTP1;MCTP1|p.V707Lfs*18|1|0.29|ENSG00000175471|chr5:94871336-94871336|T/-|frameshift_variant	nc|ENSG00000175471|Q6DN14-5|MCTP1	nc|ENSG00000175471|Q6DN14-5|MCTP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2792358398438	2	548.8055	1095.59645	0.37746	0.00020715	-1.3167	-0.00072259	-0.93919	-0.00051543	549.3060073385353	73.476	0.41348	73.53	73.335	73.749	0.053833					18	14	2	0	0	0	0.25066	1	18836	18836		11.64	0	1	97325			51928	6866	29614	29615	63696	63696					0.05247200137114305
VFTFNIKDI	9	Unmodified	_VFTFNIKDI_					0	0	0		nc|ENSG00000175471|Q6DN14-5|MCTP1;nc|ENSG00000175471|Q6DN14-4|MCTP1;nc|ENSG00000175471|Q6DN14-3|MCTP1;nc|ENSG00000175471|Q6DN14-2|MCTP1;ENSG00000175471|ENST00000515393|MCTP1;MCTP1|p.V707Lfs*18|1|0.29|ENSG00000175471|chr5:94871336-94871336|T/-|frameshift_variant	nc|ENSG00000175471|Q6DN14-5|MCTP1	nc|ENSG00000175471|Q6DN14-5|MCTP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	548.8055	1095.59645	0.27078	0.0001486	0.313	0.00017178	0.58378	0.00032038	548.8055523658379	73.463	0.38686	73.463	73.191	73.578	0	-0.03382	0.00076982	NaN	11.64	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137060			51929	6866	29614	29615							0.05247200137114305
VFTGVAIVHCS	11	Unmodified	_VFTGVAIVHCS_					0	0	0		nc|ENSG00000292339|O95671-3|ASMTL;nc|ENSG00000292339|O95671-2|ASMTL;ENSG00000169093|ENST00000381317|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	nc|ENSG00000292339|O95671-3|ASMTL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.279052734375	2	566.794609	1131.57467	0.21081	0.00011949	3.5544	0.0020146	3.7652	0.0021341	566.7961895776834	69.57	0.30869	69.636	69.518	69.826	0.066048					13	10	2	0	0	0	0.29118	1	17550	17550		27.629	11.782	1	81113			51930	6327	29615	29616	63697	63697					0.014140721169269455
VFTKSPYQEF	10	Unmodified	_VFTKSPYQEF_					0	0	0		ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.3110961914062	2	623.311146	1244.60774	0.58156	0.00036249	-0.18623	-0.00011608	0.39533	0.00024641	623.3110330021559	47.88	0.41045	47.88	47.634	48.044	0					22	14	2	0	0	0	3.4096E-05	1	10894	10894		135.72	93.763	1	947510			51931	4348	29616	29617	63698	63698					-0.0047802255940041505
VFTKSPYQEF	10	Unmodified	_VFTKSPYQEF_					0	0	0		ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.3111572265625	2	623.311146	1244.60774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.732	1	47.78	47.28	48.28	0.047523								0	0	0	1.6996E-05	1	10862	10862		101.54	65.931	1				51932	4348	29616	29617	63699	63699					-0.0047802255940041505
VFTKSPYQEF	10	Unmodified	_VFTKSPYQEF_					0	0	0		ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	ENST00000529806.5_1_16:2012098-2012518:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.3109741210938	2	623.311146	1244.60774	0.42035	0.00026201	-0.20542	-0.00012804	0.21493	0.00013397	623.3110151914146	47.839	0.36978	47.882	47.587	47.957	0.043324					16	13	2	0	0	0	0.00067342	1	10862	10862		125.18	93.913	1	1108000			51933	4348	29616	29617	63700	63700					-0.0047802255940041505
VFTLKPLEF	9	Unmodified	_VFTLKPLEF_					0	0	0		ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA	ENST00000477541.1_1_6:32916643-32917850:-|nuORF	ENST00000477541.1_1_6:32916643-32917850:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.3186645507812	2	547.318243	1092.62193	0.49361	0.00027016	-0.1251	-6.847E-05	0.36851	0.00020169	547.3180271708133	71.646	1.2634	71.646	71.375	72.639	0					90	45	3	0	0	0	0.14646	1	18218	18218		43.772	16.889	1	2115000			51934	8209	29617	29618	63701	63701					0.07932674659582517
VFTLKPLEF	9	Unmodified	_VFTLKPLEF_					0	0	0		ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA	ENST00000477541.1_1_6:32916643-32917850:-|nuORF	ENST00000477541.1_1_6:32916643-32917850:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.3185424804688	2	547.318243	1092.62193	0.56046	0.00030675	-0.083125	-4.5496E-05	0.47734	0.00026126	547.3180701116263	71.581	1.0872	71.638	71.375	72.462	0.056572					89	39	3	0	0	0	0.14646	1	18195	18195		36.506	14.76	1	2464800			51935	8209	29617	29618	63702	63702					0.07932674659582517
VFTLKPLEF	9	Unmodified	_VFTLKPLEF_					0	0	0		ENST00000477541.1_1_6:32916643-32917850:-|nuORF;nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA	ENST00000477541.1_1_6:32916643-32917850:-|nuORF	ENST00000477541.1_1_6:32916643-32917850:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.3184814453125	2	547.318243	1092.62193	0.62193	0.00034039	-0.23006	-0.00012592	0.39187	0.00021448	547.3179695391283	71.672	1.15	71.645	71.368	72.518	-0.027275					92	40	3	0	0	0	0.14646	1	18220	18220		43.772	16.889	1	2348500			51936	8209	29617	29618	63703	63703					0.07932674659582517
VFTLTLQAGLS	11	Unmodified	_VFTLTLQAGLS_					0	0	0		ENST00000514708.5_1_4:1309356-1332271:+|nuORF;ENST00000515766.1_1_4:1326530-1330951:+|nuORF;ENST00000503162.1_1_4:1326530-1332954:+|nuORF;ENST00000512289.5_1_4:1323768-1332954:+|nuORF;ENST00000506530.5_1_4:1326530-1332660:+|nuORF;nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA	ENST00000514708.5_1_4:1309356-1332271:+|nuORF;nc|ENSG00000090316|Q7L5Y9-3|MAEA	ENST00000514708.5_1_4:1309356-1332271:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.725341796875	2	575.329339	1148.64412	0.31393	0.00018061	3.0317	0.0017442	3.3456	0.0019248	575.3310897750397	49.336	0.5607	49.381	49.16	49.721	0.044891					28	20	2	0	0	0	0.32557	1	11432	11432		15.248	1.6336	1	155690			51937	11417;1373	29618	29619	63704	63704					0.0757485433734928
VFTPVVQRI	9	Unmodified	_VFTPVVQRI_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2613525390625	2	529.821484	1057.62842	0.83763	0.0004438	-0.20085	-0.00010641	0.63679	0.00033738	529.8213816216789	50.966	0.61329	50.966	50.713	51.327	0					57	22	3	0	0	0	0.11234	1	11850	11850		51.63	28.481	1	932860			51938	5086	29619	29620	63705	63705					0.10190612610949756
VFTPVVQRI	9	Unmodified	_VFTPVVQRI_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2613525390625	2	529.821484	1057.62842	0.61028	0.00032334	0.061738	3.271E-05	0.67202	0.00035605	529.8215640958038	50.924	0.63447	50.971	50.713	51.347	0.046574					57	23	3	0	0	0	0.11234	1	11827	11827		51.63	28.481	1	900130			51939	5086	29619	29620	63706	63706					0.10190612610949756
VFTPVVQRI	9	Unmodified	_VFTPVVQRI_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2612915039062	2	529.821484	1057.62842	0.77442	0.0004103	-0.14742	-7.8105E-05	0.627	0.0003322	529.8214500797162	50.953	0.673	50.963	50.729	51.402	0.0095634					67	25	3	0	0	0	0.14646	1	11835	11835		43.772	20.624	1	800100			51940	5086	29619	29620	63707	63707					0.10190612610949756
VFTPYSAAFLL	11	Unmodified	_VFTPYSAAFLL_					0	0	0		ENST00000473610.5_1_7:150648470-150652738:-|nuORF;nc|ENSG00000173826|Q9H252-3|KCNH6;nc|ENSG00000055118|Q12809-6|KCNH2;ENST00000461280.1_1_7:150646989-150652738:-|nuORF;nc|ENSG00000055118|Q12809-2|KCNH2;nc|ENSG00000055118|Q12809-5|KCNH2;nc|ENSG00000173826|Q9H252-2|KCNH6;ENSG00000173826|ENST00000314672|KCNH6;nc|ENSG00000173826|Q9H252-1|KCNH6;nc|ENSG00000055118|Q12809-7|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2	ENST00000473610.5_1_7:150648470-150652738:-|nuORF	ENST00000473610.5_1_7:150648470-150652738:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	615.3362426757812	2	614.834257	1227.65396	0.1124	6.9109E-05	0.24758	0.00015222	0.35998	0.00022133	614.8342405199969	93.161	0.8699	93.161	92.869	93.739	0					149	78	3	0	0	0	0.0057203	1	24804	24804		78.728	52.46	1	236900			51941	699	29620	29621	63708	63708					0.04924042342713619
VFTPYSAAFLL	11	Unmodified	_VFTPYSAAFLL_					0	0	0		ENST00000473610.5_1_7:150648470-150652738:-|nuORF;nc|ENSG00000173826|Q9H252-3|KCNH6;nc|ENSG00000055118|Q12809-6|KCNH2;ENST00000461280.1_1_7:150646989-150652738:-|nuORF;nc|ENSG00000055118|Q12809-2|KCNH2;nc|ENSG00000055118|Q12809-5|KCNH2;nc|ENSG00000173826|Q9H252-2|KCNH6;ENSG00000173826|ENST00000314672|KCNH6;nc|ENSG00000173826|Q9H252-1|KCNH6;nc|ENSG00000055118|Q12809-7|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2	ENST00000473610.5_1_7:150648470-150652738:-|nuORF	ENST00000473610.5_1_7:150648470-150652738:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	614.834257	1227.65396	0.15914	9.7842E-05	0.11189	6.8794E-05	0.27103	0.00016664	614.8342003891817	93.04	0.69492	93.129	92.832	93.527	0.089195	-0.020025	-6.2323E-06	NaN	78.728	140	64	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333560			51942	699	29620	29621							0.04924042342713619
VFTPYSAAFLL	11	Unmodified	_VFTPYSAAFLL_					0	0	0		ENST00000473610.5_1_7:150648470-150652738:-|nuORF;nc|ENSG00000173826|Q9H252-3|KCNH6;nc|ENSG00000055118|Q12809-6|KCNH2;ENST00000461280.1_1_7:150646989-150652738:-|nuORF;nc|ENSG00000055118|Q12809-2|KCNH2;nc|ENSG00000055118|Q12809-5|KCNH2;nc|ENSG00000173826|Q9H252-2|KCNH6;ENSG00000173826|ENST00000314672|KCNH6;nc|ENSG00000173826|Q9H252-1|KCNH6;nc|ENSG00000055118|Q12809-7|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2	ENST00000473610.5_1_7:150648470-150652738:-|nuORF	ENST00000473610.5_1_7:150648470-150652738:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	614.834257	1227.65396	0.36163	0.00022235	-0.053332	-3.279E-05	0.3083	0.00018955	614.834071620047	93.158	0.58251	93.158	92.893	93.476	-0.00051117	0.0084182	-0.0002094	NaN	78.728	134	58	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373400			51943	699	29620	29621							0.04924042342713619
VFTRLIPVL	9	Unmodified	_VFTRLIPVL_					0	0	0			REV__nc|ENSG00000076555|O00763-3|ACACB	REV__nc|ENSG00000076555|O00763-3|ACACB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8135986328125	2	529.342052	1056.66955	0.45308	0.00023984	-0.090595	-4.7956E-05	0.36249	0.00019188	529.3421254795792	79.718	0.3232	79.779	79.594	79.917	0.061409					17	11	2	0	0	0	0.24848	1	20651	20651		13.906	0	1	85236	+		51944	13831	29621	29622	63709	63709					0.14348373650409485
VFTRMDPSL	9	Unmodified	_VFTRMDPSL_					0	0	0			REV__ENST00000465153.1_1_3:179128349-179131337:-|nuORF	REV__ENST00000465153.1_1_3:179128349-179131337:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.818603515625	2	533.273509	1064.53247	0.61053	0.00032558	-0.60602	-0.00032318	0.0045064	2.4032E-06	533.2731337215721	45.5	0.16184	45.565	45.461	45.623	0.065048					6	5	2	0	0	0	0.2451	1	10145	10145		15.847	3.6065	1	97836	+		51945	14835	29622	29623	63710	63710					0.00278096708530029
VFTRVSSFL	9	Unmodified	_VFTRVSSFL_					0	0	0		ENST00000552252.1_1_14:25042845-25044048:-|nuORF;ENSG00000100448|ENST00000216336|CTSG	ENST00000552252.1_1_14:25042845-25044048:-|nuORF	ENST00000552252.1_1_14:25042845-25044048:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.8164672851562	2	528.297842	1054.58113	0.8938	0.00047219	-0.95181	-0.00050284	-0.058008	-3.0646E-05	528.2975877298469	58.465	0.4622	58.451	58.25	58.712	-0.014267					25	16	2	0	0	0	0.20167	1	14207	14207		22.736	9.6938	1	276880			51946	1599	29623	29624	63711	63711					0.05602333339948018
VFTRVSSFL	9	Unmodified	_VFTRVSSFL_					0	0	0		ENST00000552252.1_1_14:25042845-25044048:-|nuORF;ENSG00000100448|ENST00000216336|CTSG	ENST00000552252.1_1_14:25042845-25044048:-|nuORF	ENST00000552252.1_1_14:25042845-25044048:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	528.297842	1054.58113	0.60859	0.00032152	-0.59248	-0.00031301	0.016105	8.5084E-06	528.7987486877811	58.387	0.49528	58.387	58.1	58.595	0	-0.031803	0.00012918	NaN	22.736	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210730			51947	1599	29623	29624							0.05602333339948018
VFTTILIPY	9	Unmodified	_VFTTILIPY_					0	0	0		nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.291748046875	2	533.812793	1065.61103	0.31131	0.00016618	-2.7321	-0.0014584	-2.4208	-0.0012922	533.8114401391877	42.178	0.22537	42.178	41.996	42.221	0					11	7	2	0	0	0	0.25291	1	9152	9152		5.2307	0.47466	1	282040			51948	7425	29624	29625	63712	63712					0.0808527228530238
VFTTILIPY	9	Unmodified	_VFTTILIPY_					0	0	0		nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2921142578125	2	533.812793	1065.61103	0.73323	0.00039141	-2.6596	-0.0014197	-1.9264	-0.0010283	533.810940798965	41.788	0.28249	41.885	41.79	42.072	0.096622					10	9	2	0	0	0	0.25291	1	9070	9070		9.3474	2.6243	1	286940			51949	7425	29624	29625	63713	63713					0.0808527228530238
VFTVTIVCIHF	11	Unmodified	_VFTVTIVCIHF_					0	0	0		ENSG00000102195|ENST00000218316|GPR50	ENSG00000102195|ENST00000218316|GPR50	ENSG00000102195|ENST00000218316|GPR50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.2401123046875	3	426.902015	1277.68422	0.048656	2.0771E-05	-0.036412	-1.5544E-05	0.012244	5.2269E-06	426.90202143763076	51.471	1.0994	51.471	51.081	52.18	0					88	40	4	0	0	0	0.38623	1	11904	11904		7.0371	0	1	1305700			51950	1753	29625	29626	63714	63714					0.05648077736236701
VFTWAMQVLK	10	Unmodified	_VFTWAMQVLK_					0	0	0			REV__nc|ENSG00000090061|O75909-2|CCNK	REV__nc|ENSG00000090061|O75909-2|CCNK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.8360595703125	2	611.836277	1221.658	0.21077	0.00012896	-0.32958	-0.00020165	-0.11881	-7.2693E-05	611.8361127251105	25.3	0.44294	25.3	25.12	25.562	0					25	14	2	0	0	0	0.36279	1	4000	4000		11.495	2.7493	1	202820	+		51951	14038	29626	29627	63715	63715					0.056038085647742264
VFTYVGALF	9	Unmodified	_VFTYVGALF_					0	0	0		nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.77642822265625	2	508.776211	1015.53787	0.50773	0.00025832	0.086957	4.4242E-05	0.59469	0.00030256	508.77615763297143	86.112	2.051	86.112	85.714	87.765	0					219	84	6	0	0	0	2.4965E-07	6	22651	22602;22651;22697;22744;22792;22840		170.4	106.83	1	6797100			51952	2633	29627	29628	63716;63717;63718;63719;63720;63721	63717					0.030721435626787752
VFTYVGALF	9	Unmodified	_VFTYVGALF_					0	0	0		nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7763977050781	2	508.776211	1015.53787	0.38316	0.00019494	0.14026	7.1363E-05	0.52343	0.00026631	508.77620297836495	86.04	1.935	86.124	85.726	87.661	0.084251					217	79	5	0	0	0	2.4965E-07	5	22620	22571;22620;22666;22707;22759		170.4	103.05	1	6080300			51953	2633	29627	29628	63722;63723;63724;63725;63726	63723					0.030721435626787752
VFTYVGALF	9	Unmodified	_VFTYVGALF_					0	0	0		nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	nc|ENSG00000115310|Q9NQC3-3|RTN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.77642822265625	2	508.776211	1015.53787	0.4431	0.00022544	0.073562	3.7427E-05	0.51666	0.00026286	508.7761777711509	86.131	2.1069	86.122	85.699	87.806	-0.0090027					239	89	5	0	0	0	2.4965E-07	6	22631	22583;22631;22671;22717;22762;22816		170.4	106.83	1	6539100			51954	2633	29627	29628	63727;63728;63729;63730;63731;63732	63728					0.030721435626787752
VFVDSVPEF	9	Unmodified	_VFVDSVPEF_					0	0	0		ENST00000520983.5_1_8:28651295-28747426:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9	ENST00000520983.5_1_8:28651295-28747426:-|nuORF	ENST00000520983.5_1_8:28651295-28747426:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7611083984375	2	519.760758	1037.50696	0.30259	0.00015728	0.48857	0.00025394	0.79116	0.00041121	519.7608644926578	73.338	0.98285	73.338	72.961	73.944	0					91	34	4	0	0	0	2.2223E-07	2	18752	18703;18752		171.47	120.61	1	2749700			51955	1876	29628	29629	63733;63734	63734					-0.010290545422321884
VFVDSVPEF	9	Unmodified	_VFVDSVPEF_					0	0	0		ENST00000520983.5_1_8:28651295-28747426:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9	ENST00000520983.5_1_8:28651295-28747426:-|nuORF	ENST00000520983.5_1_8:28651295-28747426:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7610473632812	2	519.760758	1037.50696	0.36233	0.00018832	0.46318	0.00024074	0.82551	0.00042907	519.7608122056891	73.42	0.84026	73.391	73.042	73.882	-0.029305					92	30	4	0	0	0	5.2996E-06	2	18758	18712;18758		156.16	105.3	1	2766600			51956	1876	29628	29629	63735;63736	63736					-0.010290545422321884
VFVDSVPEF	9	Unmodified	_VFVDSVPEF_					0	0	0		ENST00000520983.5_1_8:28651295-28747426:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9	ENST00000520983.5_1_8:28651295-28747426:-|nuORF	ENST00000520983.5_1_8:28651295-28747426:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	519.760758	1037.50696	0.22898	0.00011902	0.57907	0.00030098	0.80806	0.00042	519.7609093024528	73.313	0.82359	73.367	73.037	73.861	0.053833	0.0014319	5.6771E-05	NaN	171.47	89	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2805200			51957	1876	29628	29629							-0.010290545422321884
VFVFLRLF	8	Unmodified	_VFVFLRLF_					0	0	0			REV__ENST00000403263.5_1_2:206863772-206864039:-|nuORF	REV__ENST00000403263.5_1_2:206863772-206864039:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3006591796875	2	520.818213	1039.62187	0.52334	0.00027256	-2.9604	-0.0015418	-2.4371	-0.0012693	521.3194143629509	63.946	0.43512	64.039	63.873	64.309	0.092884					23	15	2	0	0	0	0.34046	1	15841	15841		14.582	2.0501	1	295820	+		51958	20720	29629	29630	63737	63737					0.10364719450217308
VFVFRALLL	9	Unmodified	_VFVFRALLL_					0	0	0		VANGL1|p.D228Efs*66|1|0.06|ENSG00000173218|chr1:115664139-115664140|-/AAAAAAG|frameshift_variant;nc|ENSG00000173218|Q8TAA9-2|VANGL1;ENSG00000173218|ENST00000355485|VANGL1	VANGL1|p.D228Efs*66|1|0.06|ENSG00000173218|chr1:115664139-115664140|-/AAAAAAG|frameshift_variant	VANGL1|p.D228Efs*66|1|0.06|ENSG00000173218|chr1:115664139-115664140|-/AAAAAAG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8033447265625	2	539.344595	1076.67464	0.63315	0.00034148	-0.25521	-0.00013765	0.37794	0.00020384	539.3443813017202	53.177	0.44388	53.234	53.013	53.457	0.056255					22	15	2	0	0	0	0.25417	1	12593	12593		2.0598	0	1	256780			51959	6702	29630	29631	63738	63738					0.13936677513038376
VFVHVPNVL	9	Unmodified	_VFVHVPNVL_					0	0	0		nc|ENSG00000176383|Q9C0J1-2|B3GNT4;ENSG00000176383|ENST00000324189|B3GNT4	nc|ENSG00000176383|Q9C0J1-2|B3GNT4	nc|ENSG00000176383|Q9C0J1-2|B3GNT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.30322265625	2	512.302927	1022.5913	0.2334	0.00011957	-0.1821	-9.329E-05	0.051298	2.628E-05	512.302996076599	80.93	0.48299	80.904	80.652	81.135	-0.026825					33	19	2	0	0	0	0.26879	1	21040	21040		13.508	0	1	229440			51960	6922	29631	29632	63739	63739					0.08090941065177049
VFVKEPTEF	9	Unmodified	_VFVKEPTEF_					0	0	0			REV__nc|ENSG00000105287|Q9BZL6-2|PRKD2	REV__nc|ENSG00000105287|Q9BZL6-2|PRKD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7710571289062	2	548.289682	1094.56481	0.45564	0.00024983	-0.38828	-0.00021289	0.067364	3.6935E-05	548.2892781233394	57.625	0.42166	57.625	57.376	57.798	0					32	14	3	0	0	0	0.14961	1	13919	13919		41.84	11.615	1	1344600	+		51961	14448	29632	29633	63740	63740					0.02131207383195033
VFVKEPTEF	9	Unmodified	_VFVKEPTEF_					0	0	0			REV__nc|ENSG00000105287|Q9BZL6-2|PRKD2	REV__nc|ENSG00000105287|Q9BZL6-2|PRKD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.770751953125	2	548.289682	1094.56481	0.53622	0.00029401	-0.63724	-0.00034939	-0.10101	-5.5385E-05	548.2890859102987	57.422	0.36827	57.507	57.318	57.686	0.085621					27	12	3	0	0	0	0.18123	1	13862	13862		34.402	11.253	1	1593800	+		51962	14448	29632	29633	63741	63741					0.02131207383195033
VFVKEPTEF	9	Unmodified	_VFVKEPTEF_					0	0	0			REV__nc|ENSG00000105287|Q9BZL6-2|PRKD2	REV__nc|ENSG00000105287|Q9BZL6-2|PRKD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.770751953125	2	548.289682	1094.56481	0.36904	0.00020234	-0.13719	-7.5221E-05	0.23184	0.00012712	548.2894447977967	57.695	0.40285	57.678	57.471	57.874	-0.0172					32	14	3	0	0	0	0.20881	1	13937	13937		27.629	4.4804	1	1639100	+		51963	14448	29632	29633	63742	63742					0.02131207383195033
VFVKTPRGTT	10	Unmodified	_VFVKTPRGTT_					0	0	0			REV__ENSG00000139618|ENST00000380152|BRCA2	REV__ENSG00000139618|ENST00000380152|BRCA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3324584960938	2	553.321848	1104.62914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.59	1	86.59	86.09	87.09	0								0	0	0	0.3629	1	22797	22797		9.3831	2.66	1		+		51964	15994	29633	29634	63743	63743					0.08101407260005544
VFVMRSTCSDL	11	Unmodified	_VFVMRSTCSDL_					0	0	0			REV__ENST00000306376.9_1_3:185764220-185764328:-|nuORF	REV__ENST00000306376.9_1_3:185764220-185764328:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.31549072265625	3	419.870386	1256.58933	-0.23172	-9.7291E-05	1.0276	0.00043147	0.79591	0.00033418	419.8709273916644	23.424	0.62698	23.424	23.173	23.8	0					41	21	3	0	0	0	0.33277	1	3525	3525		1.4551	0	1	115870	+		51965	19860	29634	29635	63744	63744					-0.02870223797253857
VFVNTHHIL	9	Unmodified	_VFVNTHHIL_					0	0	0		nc|ENSG00000170340|Q9NY97-2|B3GNT2;ENSG00000170340|ENST00000301998|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	nc|ENSG00000170340|Q9NY97-2|B3GNT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3141479492188	2	540.303458	1078.59236	0.6371	0.00034423	0.56584	0.00030572	1.2029	0.00064995	540.3036925978696	40.35	0.28049	40.35	40.193	40.473	0					12	9	2	0	0	0	0.16283	1	8582	8582		29.082	8.2104	1	163560			51966	6445	29635	29636	63745	63745					0.05621155434096181
VFVPWHQF	8	Unmodified	_VFVPWHQF_					0	0	0			REV__nc|ENSG00000114544|Q96GZ6-6|SLC41A3	REV__nc|ENSG00000114544|Q96GZ6-6|SLC41A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.313720703125	2	530.27417	1058.53379	0.50171	0.00026605	0.014807	7.8519E-06	0.51652	0.0002739	530.2740866903963	63.188	0.30155	63.18	63.024	63.325	-0.0085526					15	10	2	0	0	0	0.34046	1	15623	15623		5.2307	0	1	166730	+		51967	14838	29636	29637	63746	63746					0.006860988595917661
VFVPWHQIT	9	Unmodified	_VFVPWHQIT_					0	0	0			REV__nc|ENSG00000114544|Q96GZ6-7|SLC41A3	REV__nc|ENSG00000114544|Q96GZ6-7|SLC41A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.820068359375	2	563.805834	1125.59712	0.27027	0.00015238	-1.5931	-0.00089822	-1.3229	-0.00074584	563.8046309246198	27.021	0.4275	27	26.788	27.215	-0.021412					21	14	2	0	0	0	0.31763	1	4501	4501		6.2058	0	1	59205	+		51968	22954	29637	29638	63747	63747					0.03934039576847681
VFVRLEGGTL	10	Unmodified	_VFVRLEGGTL_					0	0	0		ENSG00000136478|ENST00000584379|TEX2;nc|ENSG00000136478|Q8IWB9-2|TEX2	ENSG00000136478|ENST00000584379|TEX2	ENSG00000136478|ENST00000584379|TEX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.2760009765625	2	545.816399	1089.61824	0.40602	0.00022161	1.3504	0.00073705	1.7564	0.00095866	545.8173029287076	67.222	0.68684	67.206	66.736	67.423	-0.016296					43	23	3	0	0	0	0.24708	1	16768	16768		22.736	0	1	425530			51969	3976	29638	29639	63748	63748					0.07702004885732094
VFVRRHLL	8	Unmodified	_VFVRRHLL_					0	0	0			REV__ENSG00000148734|ENST00000277942|NPFFR1	REV__ENSG00000148734|ENST00000277942|NPFFR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.30078125	2	520.329811	1038.64507	0.44857	0.00023341	-2.106	-0.0010958	-1.6574	-0.00086239	520.3290632999883	63.145	1.6496	63.241	62.253	63.902	0.095726					116	59	4	0	0	0	0.34046	1	15792	15792		14.582	0	1	2490500	+		51970	16433	29639	29640	63749	63749					0.12729158287561404
VFVVDSAAF	9	Unmodified	_VFVVDSAAF_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7503662109375	2	477.750193	953.485833	0.14257	6.8114E-05	0.31849	0.00015216	0.46106	0.00022027	477.75027686785995	70.027	1.1428	70.027	69.76	70.902	0					89	41	3	0	0	0	6.8028E-05	2	17746	17697;17746		146.01	85.618	1	1441400			51971	4620	29640	29641	63750;63751	63751					0.007229801489074816
VFVVDSAAF	9	Unmodified	_VFVVDSAAF_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.7502746582031	2	477.750193	953.485833	0.2027	9.684E-05	0.19958	9.5351E-05	0.40228	0.00019219	477.7502324546625	69.996	1.0081	70.062	69.741	70.749	0.06604					85	35	3	0	0	0	6.8028E-05	2	17683	17683;17731		146.01	85.618	1	1560600			51972	4620	29640	29641	63752;63753	63752					0.007229801489074816
VFVVDSAAF	9	Unmodified	_VFVVDSAAF_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7500915527344	2	477.750193	953.485833	0.26025	0.00012433	0.11259	5.379E-05	0.37284	0.00017812	477.7501813404901	70.067	1.1603	70.045	69.755	70.915	-0.022087					98	41	4	0	0	0	6.8028E-05	2	17696	17696;17742		146.01	85.618	1	1481800			51973	4620	29640	29641	63754;63755	63754					0.007229801489074816
VFVWEPMI	8	Unmodified	_VFVWEPMI_					0	0	0			REV__ENSG00000143195|ENST00000271417|ILDR2	REV__ENSG00000143195|ENST00000271417|ILDR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.7645568847656	2	510.764789	1019.51502	0.07173	3.6637E-05	-0.68786	-0.00035134	-0.61613	-0.0003147	510.76431587025303	17.393	0.72262	17.275	16.909	17.631	-0.11739					62	25	3	0	0	0	0.45169	1	1630	1630		5.2307	0.90143	1	203500	+		51974	16156	29641	29642	63756	63756					0.006048011735515502
VFWGFALLI	9	Unmodified	_VFWGFALLI_					0	0	0			REV__ENST00000575300.1_1_16:4312060-4322792:-|nuORF	REV__ENST00000575300.1_1_16:4312060-4322792:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7823486328125	2	533.310221	1064.60589	0.46896	0.0002501	-0.33961	-0.00018112	0.12935	6.8981E-05	533.3098953280868	54.084	0.45199	54.147	53.93	54.382	0.063206					25	16	2	0	0	0	0.24542	1	12879	12879		14.582	3.4672	1	411770	+		51975	22441	29642	29643	63757	63757					0.07617013213325663
VFWLKKWHR	9	Unmodified	_VFWLKKWHR_					0	0	0			REV__nc|ENSG00000154783|Q6ZNL6-2|FGD5	REV__nc|ENSG00000154783|Q6ZNL6-2|FGD5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.91943359375	3	433.92062	1298.74003	-0.4762	-0.00020663	-1.5675	-0.00068017	-2.0437	-0.0008868	433.91986430112917	28.106	0.54869	28.106	27.87	28.418	0					44	18	4	0	0	0	0.35116	1	4841	4841		1.1933	0.49568	1	277180	+		51976	16678	29643	29644	63758	63758					0.1026109175872989
VFWNIQIM	8	Unmodified	_VFWNIQIM_					0	0	0			REV__ENST00000261716.7_1_17:27872631-27872679:+|nuORF	REV__ENST00000261716.7_1_17:27872631-27872679:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3084716796875	2	525.775688	1049.53682	0.64271	0.00033792	2.038	0.0010715	2.6807	0.0014095	525.7769326156281	72.67	0.76894	72.64	72.332	73.101	-0.029305					45	26	3	0	0	0	0.34046	1	18657	18657		14.582	3.4672	1	410200	+		51977	19601	29644	29645	63759	63759					0.014036059221098185
VFWRKRWAYRQ	11	Unmodified	_VFWRKRWAYRQ_					0	0	0			REV__nc|ENSG00000160219|Q8WWW8-3|GAB3	REV__nc|ENSG00000160219|Q8WWW8-3|GAB3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.6298217773438	3	532.628388	1594.86333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.98	1	111.96	111.46	112.46	-0.015625								0	0	0	0.38222	1	29129	29129		0.094841	0	1		+		51978	16891	29645	29646	63760	63760					0.08969723139216512
VFWVYYTY	8	Unmodified	_VFWVYYTY_					0	0	0			REV__ENSG00000164414|ENST00000369552|SLC35A1	REV__ENSG00000164414|ENST00000369552|SLC35A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8095703125	2	570.773668	1139.53278	-0.17512	-9.9952E-05	-1.1829	-0.00067517	-1.358	-0.00077513	570.7733071640913	12.887	0.20733	12.819	12.671	12.878	-0.067496					10	6	2	0	0	0	0.34437	1	261	261		0.69038	0	1	18800	+		51979	17157	29646	29647	63761	63761					-0.03140160299949457
VFYADKYTCQ	10	Unmodified	_VFYADKYTCQ_					0	0	0		ENSG00000152749|ENST00000376958|GPR180	ENSG00000152749|ENST00000376958|GPR180	ENSG00000152749|ENST00000376958|GPR180	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.2822875976562	2	619.281531	1236.54851	0.14573	9.0246E-05	0.38452	0.00023812	0.53025	0.00032837	619.2817586373188	79.774	0.55968	79.836	79.594	80.154	0.061417					40	20	3	0	0	0	0.36786	2	20693	20693;20700		9.3831	3.1773	1	207330			51980	5037	29647	29648	63762;63763	63762					-0.0603024184520109
VFYDKLPSFE	10	Unmodified	_VFYDKLPSFE_					0	0	0		nc|ENSG00000118473|Q9BQI5-5|SGIP1	nc|ENSG00000118473|Q9BQI5-5|SGIP1	nc|ENSG00000118473|Q9BQI5-5|SGIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.2830810546875	2	622.813522	1243.61249	0.25673	0.0001599	-0.87934	-0.00054767	-0.62261	-0.00038777	623.3144932177054	79.802	0.48814	79.774	79.544	80.032	-0.028931					30	17	3	0	0	0	0.3198	1	20707	20707		4.3292	0	1	134040			51981	12677	29648	29649	63764	63764					0.0004286158336981316
VFYFGNGW	8	Unmodified	_VFYFGNGW_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2;ENST00000521571.6_1_11:61607769-61608033:+|nuORF	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2926940917969	2	495.229428	988.444303	0.36437	0.00018045	-0.076359	-3.7815E-05	0.28801	0.00014263	495.2290895964285	26.271	0.33657	26.249	26.073	26.409	-0.022236					16	11	2	0	0	0	0.34147	1	4267	4267		6.3541	0	1	33818			51982	3816	29649	29650	63765	63765					-0.05038155819761414
VFYGIFAIGL	10	Unmodified	_VFYGIFAIGL_					0	0	0			REV__ENSG00000159527|ENST00000683862|PGLYRP3	REV__ENSG00000159527|ENST00000683862|PGLYRP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.832275390625	2	550.312961	1098.61137	0.13044	7.178E-05	3.3779	0.0018589	3.5083	0.0019307	550.3153862347034	13.044	0.2564	12.945	12.841	13.097	-0.099291					11	8	2	0	0	0	0.31745	1	338	338		7.9102	2.1783	1	15127	+		51983	16858	29650	29651	63766	63766					0.06600692005144992
VFYKLRKR	8	Unmodified	_VFYKLRKR_					0	0	0		ENSG00000128594|ENST00000249363|LRRC4	ENSG00000128594|ENST00000249363|LRRC4	ENSG00000128594|ENST00000249363|LRRC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7962036132812	2	555.350743	1108.68693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.14	1	113.13	112.63	113.63	-0.017303								0	0	0	0.37664	1	29415	29415		2.5775	0.51773	1				51984	3378	29651	29652	63767	63767					0.13693713976067556
VFYKLRKR	8	Unmodified	_VFYKLRKR_					0	0	0		ENSG00000128594|ENST00000249363|LRRC4	ENSG00000128594|ENST00000249363|LRRC4	ENSG00000128594|ENST00000249363|LRRC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.796142578125	2	555.350743	1108.68693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.3	1	113.32	112.82	113.82	0.014824								0	0	0	0.37664	1	29482	29482		2.5775	0.51773	1				51985	3378	29651	29652	63768	63768					0.13693713976067556
VFYLWTTAQF	10	Unmodified	_VFYLWTTAQF_					0	0	0			REV__ENST00000305352.6_1_1:101706579-101706750:+|nuORF	REV__ENST00000305352.6_1_1:101706579-101706750:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.7750549316406	3	425.88513	1274.63356	0.33058	0.00014079	2.6526	0.0011297	2.9831	0.0012705	425.88644039509234	33.903	0.4159	33.97	33.875	34.29	0.06636					24	14	2	0	0	0	0.32068	1	6646	6646		1.7423	1.1791	1	121820	+		51986	19850	29652	29653	63769	63769					0.00722871682864934
VFYPNSNKF	9	Unmodified	_VFYPNSNKF_					0	0	0		ENSG00000160345|ENST00000429260|PIERCE1	ENSG00000160345|ENST00000429260|PIERCE1	ENSG00000160345|ENST00000429260|PIERCE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3505249023438	2	558.279649	1114.54475	0.24391	0.00013617	1.1771	0.00065716	1.421	0.00079333	558.7819074698157	43.834	0.57376	43.834	43.602	44.176	0					31	20	2	0	0	0	0.18123	1	9660	9660		34.402	12.655	1	339190			51987	5460	29653	29654	63770	63770					-0.007945435567535242
VFYPNSNKF	9	Unmodified	_VFYPNSNKF_					0	0	0		ENSG00000160345|ENST00000429260|PIERCE1	ENSG00000160345|ENST00000429260|PIERCE1	ENSG00000160345|ENST00000429260|PIERCE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3504638671875	2	558.279649	1114.54475	0.42258	0.00023592	0.515	0.00028751	0.93758	0.00052343	558.7814815761856	43.491	0.57276	43.568	43.347	43.92	0.077518					31	20	2	0	0	0	0.1939	1	9553	9553		30.637	19.813	1	331940			51988	5460	29653	29654	63771	63771					-0.007945435567535242
VFYPNSNKF	9	Unmodified	_VFYPNSNKF_					0	0	0		ENSG00000160345|ENST00000429260|PIERCE1	ENSG00000160345|ENST00000429260|PIERCE1	ENSG00000160345|ENST00000429260|PIERCE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.350341796875	2	558.279649	1114.54475	0.33954	0.00018956	0.64558	0.00036041	0.98512	0.00054997	558.2797577562247	43.662	0.64303	43.746	43.327	43.97	0.083996					34	23	2	0	0	0	0.11397	1	9541	9541		49.933	24.534	1	276920			51989	5460	29653	29654	63772	63772					-0.007945435567535242
VFYPPNGVIPF	11	Unmodified	_VFYPPNGVIPF_					0	0	0		ENST00000502873.5_1_4:26585743-26755545:+|nuORF;ENSG00000109680|ENST00000264866|TBC1D19;nc|ENSG00000109680|Q8N5T2-2|TBC1D19	ENST00000502873.5_1_4:26585743-26755545:+|nuORF	ENST00000502873.5_1_4:26585743-26755545:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.3353881835938	2	625.334424	1248.6543	0.53834	0.00033664	0.86044	0.00053806	1.3988	0.0008747	625.3346291902315	86.406	1.453	86.406	85.763	87.216	0					115	56	3	0	0	0	0.14521	2	22801	22801;22851		36.127	23.886	1	425790			51990	2265	29654	29655	63773;63774	63773					0.039914620625495445
VFYPPNGVIPF	11	Unmodified	_VFYPPNGVIPF_					0	0	0		ENST00000502873.5_1_4:26585743-26755545:+|nuORF;ENSG00000109680|ENST00000264866|TBC1D19;nc|ENSG00000109680|Q8N5T2-2|TBC1D19	ENST00000502873.5_1_4:26585743-26755545:+|nuORF	ENST00000502873.5_1_4:26585743-26755545:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.8374633789062	2	625.334424	1248.6543	0.34436	0.00021534	0.87219	0.00054541	1.2166	0.00076075	625.3347137935964	86.419	1.5998	86.41	85.758	87.358	-0.0090103					123	63	3	0	0	0	0.053368	2	22756	22756;22840		52.268	35.155	1	369350			51991	2265	29654	29655	63775;63776	63775					0.039914620625495445
VFYPYPQYF	9	Unmodified	_VFYPYPQYF_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.292236328125	2	612.292225	1222.5699	0.27962	0.00017121	-0.23917	-0.00014644	0.04045	2.4767E-05	612.292061307019	79.851	1.9262	79.851	79.467	81.393	0					248	80	6	0	0	0	0.00097449	9	20698	20698;20745;20788;20830;20875;20925;20978;21025;21137		123.1	92.687	1	10930000			51992	1814	29655	29656	63777;63778;63779;63780;63781;63782;63783;63784;63785	63777					-0.032484887542068464
VFYPYPQYF	9	Unmodified	_VFYPYPQYF_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.2926635742188	2	612.292225	1222.5699	0.29117	0.00017828	-0.13978	-8.5584E-05	0.15139	9.2695E-05	612.2918421922296	81.64	1.286	81.64	81.393	82.679	0					63	49	2	0	0	0	0.1669	1	21242	21242		28.487	21.764	1	129830			51993	1814	29655	29656	63786	63786					-0.032484887542068464
VFYPYPQYF	9	Unmodified	_VFYPYPQYF_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.2926025390625	2	612.292225	1222.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.924	1	81.924	81.424	82.424	0								0	0	0	0.15265	1	21362	21362		34.102	27.379	1				51994	1814	29655	29656	63787	63787					-0.032484887542068464
VFYPYPQYF	9	Unmodified	_VFYPYPQYF_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.2919311523438	2	612.292225	1222.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.394	1	82.394	81.894	82.894	0								0	0	0	0.20238	1	21508	21508		21.747	14.457	1				51995	1814	29655	29656	63788	63788					-0.032484887542068464
VFYPYPQYF	9	Unmodified	_VFYPYPQYF_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.2924194335938	2	612.292225	1222.5699	0.28786	0.00017626	-0.26081	-0.00015969	0.027048	1.6561E-05	612.2920639380118	79.781	2.1652	79.843	79.394	81.559	0.061417					267	91	6	0	0	0	0.00012008	11	20669	20669;20713;20753;20802;20855;20902;20908;20958;21006;21057;21111		137.59	96.828	1	12543000			51996	1814	29655	29656	63789;63790;63791;63792;63793;63794;63795;63796;63797;63798;63799	63789					-0.032484887542068464
VFYPYPQYF	9	Unmodified	_VFYPYPQYF_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.2923583984375	2	612.292225	1222.5699	0.28415	0.00017398	-0.22232	-0.00013613	0.061829	3.7857E-05	612.2920763739158	79.888	2.0652	79.859	79.471	81.536	-0.028923					259	80	6	0	0	0	2.3185E-05	11	20746	20701;20746;20787;20833;20879;20927;20980;20987;21032;21085;21134		153.26	117.22	1	12056000			51997	1814	29655	29656	63800;63801;63802;63803;63804;63805;63806;63807;63808;63809;63810	63801					-0.032484887542068464
VFYPYPQYF	9	Unmodified	_VFYPYPQYF_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.29248046875	2	612.292225	1222.5699	0.29795	0.00018243	0.18789	0.00011504	0.48584	0.00029748	612.7941103994043	82.058	0.59591	82.034	81.541	82.137	-0.024048					33	24	2	0	0	0	0.12846	1	21331	21331		34.102	19.264	1	182650			51998	1814	29655	29656	63811	63811					-0.032484887542068464
VFYPYPQYF	9	Unmodified	_VFYPYPQYF_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.3554077148438	2	612.292225	1222.5699	0.36313	0.00022234	0.34392	0.00021058	0.70704	0.00043292	612.7941620476146	82.361	0.57137	82.34	82.196	82.768	-0.020576					33	22	2	0	0	0	0.19839	1	21582	21582		28.487	21.764	1	136150			51999	1814	29655	29656	63812	63812					-0.032484887542068464
VFYPYPQYF	9	Unmodified	_VFYPYPQYF_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	612.292225	1222.5699	0.079617	4.8749E-05	0.094603	5.7925E-05	0.17422	0.00010667	612.2919056324596	81.778	0.50266	81.847	81.566	82.069	0.068993	0.0066547	9.2808E-05	NaN	34.102	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153510			52000	1814	29655	29656							-0.032484887542068464
VFYPYPQYF	9	Unmodified	_VFYPYPQYF_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	612.292225	1222.5699	0.27784	0.00017012	-0.055872	-3.421E-05	0.22196	0.00013591	612.2922567251129	82.163	0.76074	82.232	82.105	82.866	0.068993	-0.053905	-0.000231	NaN	28.487	43	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162520			52001	1814	29655	29656							-0.032484887542068464
VFYTMITSML	10	Unmodified	_VFYTMITSML_					0	0	0		ENSG00000258817|ENST00000555099|OR4C13	ENSG00000258817|ENST00000555099|OR4C13	ENSG00000258817|ENST00000555099|OR4C13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.2999877929688	2	603.300878	1204.5872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.078	1	81.051	80.551	81.551	-0.026825								0	0	0	0.35421	1	21086	21086		13.042	0.80181	1				52002	8644	29656	29657	63813	63813					-0.006906525350814263
VGAAPRTR	8	Unmodified	_VGAAPRTR_					0	0	0			REV__ENST00000590830.5_1_19:1578341-1584901:-|nuORF	REV__ENST00000590830.5_1_19:1578341-1584901:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.90582275390625	2	414.245944	826.477334	-0.33043	-0.00013688	0.4699	0.00019465	0.13947	5.7774E-05	414.24606020297824	14.696	0.39324	14.696	14.531	14.925	0					30	13	3	0	0	0	0.3439	1	863	863		2.8892	0.31174	1	198810	+		52003	22558	29657	29658	63814	63814					0.057154710229383454
VGAGAGGG	8	Unmodified	_VGAGAGGG_					0	0	0		ENST00000537025.6_1_17:66032291-66032333:+|nuORF;ENSG00000116954|ENST00000373001|RRAGC	REV__nc|ENSG00000161681|Q9Y566-3|SHANK1;ENSG00000116954|ENST00000373001|RRAGC	REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3171997070312	1	545.267801	544.260525	0.44483	0.00024255	0.47753	0.00026038	0.92236	0.00050293	545.2686310158208	80.252	0.16985	80.252	80.124	80.294	0					8	5	2	0	0	0	0.34445	1	20841	20841		0	0	1	169440			52004	16948;2763	29658	29659	63815	63815					-0.02983504530607206
VGALLVYDIA	10	Unmodified	_VGALLVYDIA_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8157958984375	2	517.30005	1032.58555	0.12182	6.3015E-05	-4.3067	-0.0022279	-4.1849	-0.0021649	517.2969972351578	49.259	0.77357	49.291	48.801	49.574	0.032047					44	27	2	0	0	0	0.33268	1	11191	11191		15.847	3.3156	1	462890			52005	1852	29659	29660	63816	63816					0.07055797762859584
VGALLVYDIA	10	Unmodified	_VGALLVYDIA_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	517.30005	1032.58555	0.50251	0.00025995	-6.2639	-0.0032403	-5.7614	-0.0029804	517.29679183487	49.241	0.67982	49.241	48.97	49.65	0	-0.030018	-9.8291E-05	NaN	15.847	40	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	394200			52006	1852	29659	29660							0.07055797762859584
VGALLVYDIA	10	Unmodified	_VGALLVYDIA_					0	0	0		nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B	nc|ENSG00000103769|P62491-2|RAB11A	nc|ENSG00000103769|P62491-2|RAB11A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	517.30005	1032.58555	0.26249	0.00013578	-5.9789	-0.0030929	-5.7164	-0.0029571	517.2968632575079	49.235	0.62376	49.28	49.045	49.669	0.044891	0.0096949	0.00019658	NaN	15.847	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	543220			52007	1852	29659	29660							0.07055797762859584
VGALTHLL	8	Unmodified	_VGALTHLL_					0	0	0		nc|ENSG00000140691|Q96C12-2|ARMC5;ENSG00000140691|ENST00000268314|ARMC5;nc|ENSG00000140691|Q96C12-3|ARMC5;ENST00000457010.6_2_16:31477148-31477304:+|nuORF	nc|ENSG00000140691|Q96C12-2|ARMC5	nc|ENSG00000140691|Q96C12-2|ARMC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5786437988281	2	412.255446	822.496338	-0.04747	-1.957E-05	0.40647	0.00016757	0.359	0.000148	412.25536587406435	29.59	0.55242	29.603	29.421	29.974	0.013475					39	18	3	0	0	0	0.32778	1	5360	5360		20.871	0	1	194270			52008	4329	29660	29661	63817	63817					0.0779900759400789
VGAPLYRL	8	Unmodified	_VGAPLYRL_					0	0	0			REV__ENST00000586813.5_1_17:27071228-27075044:+|nuORF	REV__ENST00000586813.5_1_17:27071228-27075044:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	444.91656494140625	2	444.76872	887.522887	0.33627	0.00014956	0.3868	0.00017204	0.72307	0.0003216	444.7687903650104	55.22	0.75756	55.22	54.974	55.732	0					64	27	4	0	0	0	0.34046	1	13298	13298		9.3474	0	1	1431600	+		52009	22523	29661	29662	63818	63818					0.07462696485333709
VGAPLYRL	8	Unmodified	_VGAPLYRL_					0	0	0			REV__ENST00000586813.5_1_17:27071228-27075044:+|nuORF	REV__ENST00000586813.5_1_17:27071228-27075044:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	444.91650390625	2	444.76872	887.522887	0.41111	0.00018285	0.17408	7.7426E-05	0.58519	0.00026027	444.7687815326294	55.174	0.70445	55.244	54.971	55.675	0.070885					59	25	3	0	0	0	0.32778	1	13270	13270		14.582	4.5078	1	1394800	+		52010	22523	29661	29662	63819	63819					0.07462696485333709
VGAPNKKK	8	Unmodified	_VGAPNKKK_					0	0	0			REV__ENST00000433510.2_1_17:46713876-46724046:-|nuORF	REV__ENST00000433510.2_1_17:46713876-46724046:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2561950683594	2	421.266345	840.518136	-0.2604	-0.0001097	-0.1299	-5.4721E-05	-0.3903	-0.00016442	421.2662243972817	15.718	0.4191	15.718	15.528	15.947	0					32	14	3	0	0	0	0.42758	1	1178	1178		13.508	1.8676	1	102310	+		52011	20970	29662	29663	63820	63820					0.09149812342559471
VGAPNKKK	8	Unmodified	_VGAPNKKK_					0	0	0			REV__ENST00000433510.2_1_17:46713876-46724046:-|nuORF	REV__ENST00000433510.2_1_17:46713876-46724046:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2561950683594	2	421.266345	840.518136	-0.18384	-7.7445E-05	-0.15179	-6.3945E-05	-0.33563	-0.00014139	421.2661381164426	15.849	0.40635	15.739	15.549	15.955	-0.10981					27	13	3	0	0	0	0.42758	1	1214	1214		13.508	4.1604	1	123590	+		52012	20970	29662	29663	63821	63821					0.09149812342559471
VGAPSLYL	8	Unmodified	_VGAPSLYL_					0	0	0			REV__nc|ENSG00000185053|Q96LD1|SGCZ	REV__nc|ENSG00000185053|Q96LD1|SGCZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.8840026855469	2	410.234179	818.453805	-0.091004	-3.7333E-05	4.3699	0.0017927	4.2789	0.0017554	410.23819548045475	15.733	0.17914	15.623	15.517	15.696	-0.10981					6	5	2	0	0	0	0.3439	1	1113	1113		2.8892	0	1	3693.3	+		52013	18351	29663	29664	63822	63822					0.03731612465753642
VGARIYHTI	9	Unmodified	_VGARIYHTI_					0	0	0		ENSG00000008394|ENST00000396210|MGST1;ENST00000539708.5_1_12:16513351-16516972:+|nuORF	ENSG00000008394|ENST00000396210|MGST1	ENSG00000008394|ENST00000396210|MGST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2957153320312	2	515.295633	1028.57671	0.30183	0.00015553	0.17305	8.9174E-05	0.47488	0.0002447	515.2956617502916	30.741	1.0278	30.741	30.448	31.476	0					83	36	3	0	0	0	0.0033114	2	5680	5636;5680		99.799	55.392	1	2898200			52014	396	29664	29665	63823;63824	63824					0.06356868917032443
VGARIYHTI	9	Unmodified	_VGARIYHTI_					0	0	0		ENSG00000008394|ENST00000396210|MGST1;ENST00000539708.5_1_12:16513351-16516972:+|nuORF	ENSG00000008394|ENST00000396210|MGST1	ENSG00000008394|ENST00000396210|MGST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2957763671875	2	515.295633	1028.57671	0.17308	8.9187E-05	0.38027	0.00019595	0.55335	0.00028514	515.2957724990188	30.74	1.119	30.767	30.409	31.528	0.027946					85	39	3	0	0	0	0.0083926	3	5682	5631;5682;5738		81.89	41.933	1	2978400			52015	396	29664	29665	63825;63826;63827	63826					0.06356868917032443
VGARIYHTI	9	Unmodified	_VGARIYHTI_					0	0	0		ENSG00000008394|ENST00000396210|MGST1;ENST00000539708.5_1_12:16513351-16516972:+|nuORF	ENSG00000008394|ENST00000396210|MGST1	ENSG00000008394|ENST00000396210|MGST1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2957763671875	2	515.295633	1028.57671	0.031395	1.6178E-05	0.45186	0.00023284	0.48325	0.00024902	515.2958054296683	30.74	1.0715	30.767	30.422	31.493	0.027157					86	38	3	0	0	0	0.0033114	2	5659	5659;5705		99.799	46.223	1	2856600			52016	396	29664	29665	63828;63829	63828					0.06356868917032443
VGARTSKF	8	Unmodified	_VGARTSKF_					0	0	0			REV__ENST00000477586.5_1_1:111742445-111742715:-|nuORF	REV__ENST00000477586.5_1_1:111742445-111742715:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.8908386230469	2	433.248152	864.481751	-0.26109	-0.00011312	1.8592	0.00080548	1.5981	0.00069236	433.2489069575966	29.459	0.52533	29.472	29.22	29.745	0.013474					21	17	2	0	0	0	0.34218	1	5328	5328		5.2307	0	1	76289	+		52017	21437	29665	29666	63830	63830					0.04408935445849238
VGATSGIYLQQ	11	Unmodified	_VGATSGIYLQQ_					0	0	0			REV__ENSG00000075213|ENST00000265362|SEMA3A	REV__ENSG00000075213|ENST00000265362|SEMA3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.7881469726562	2	568.800946	1135.58734	-0.033764	-1.9205E-05	2.496	0.0014197	2.4622	0.0014005	568.8022886104837	15.286	0.28179	15.286	15.1	15.382	0					11	9	2	0	0	0	0.44523	1	941	941		5.2969	0	1	19060	+		52018	13802	29666	29667	63831	63831					0.02496806780800398
VGAVGHKAA	9	Unmodified	_VGAVGHKAA_					0	0	0			REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	REV__nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.9068603515625	2	405.235045	808.455536	-0.22851	-9.2601E-05	0.54393	0.00022042	0.31542	0.00012782	405.23503687088356	16.029	0.56796	15.967	15.756	16.324	-0.062534					31	19	2	0	0	0	0.24311	1	1241	1241		16.942	5.302	1	96683	+		52019	23077	29667	29668	63832	63832					0.04364666274364026
VGAVGRQR	8	Unmodified	_VGAVGRQR_					0	0	0		ENST00000586748.5_1_19:11039095-11039324:-|nuORF	ENST00000586748.5_1_19:11039095-11039324:-|nuORF	ENST00000586748.5_1_19:11039095-11039324:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.75115966796875	2	421.751393	841.488233	0.061567	2.5966E-05	-0.28613	-0.00012068	-0.22456	-9.4709E-05	421.75117908864166	79.917	0.85283	79.888	79.62	80.473	-0.028923					68	29	3	0	0	0	0.4419	1	20722	20722		8.5933	0	1	703900			52020	12122	29668	29669	63833	63833					0.061148733972345326
VGCAARRRPA	10	Unmodified	_VGCAARRRPA_					0	0	0		ENSG00000183734|ENST00000331289|ASCL2	ENSG00000183734|ENST00000331289|ASCL2	ENSG00000183734|ENST00000331289|ASCL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3198852539062	2	528.795809	1055.57707	0.42759	0.00022611	-0.4199	-0.00022204	0.0076866	4.0646E-06	528.7955233872351	27.158	0.36015	27.146	26.958	27.318	-0.011562					22	12	2	0	0	0	0.31847	1	4545	4545		6.7232	0	1	96052			52021	7395	29669	29670	63834	63834					0.0514996536523995
VGDAQWTLS	9	Unmodified	_VGDAQWTLS_					0	0	0			REV__ENST00000278935.7_2_11:117283083-117283290:+|nuORF	REV__ENST00000278935.7_2_11:117283083-117283290:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.24896240234375	2	488.740357	975.46616	0.39849	0.00019476	-0.30022	-0.00014673	0.098272	4.8029E-05	488.7400768624246	79.421	0.68684	79.421	79.164	79.851	0					50	26	3	0	0	0	0.25323	1	20695	20695		10.074	2.1638	1	252980	+		52022	19704	29670	29671	63835	63835					-0.022553958618573233
VGDAQWTLS	9	Unmodified	_VGDAQWTLS_					0	0	0			REV__ENST00000278935.7_2_11:117283083-117283290:+|nuORF	REV__ENST00000278935.7_2_11:117283083-117283290:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	488.740357	975.46616	0.47772	0.00023348	-0.68719	-0.00033586	-0.20947	-0.00010238	488.73992185868764	79.41	0.72554	79.381	78.97	79.696	-0.028923	-0.037191	-0.00020217	NaN	10.074	45	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190990	+		52023	19704	29670	29671							-0.022553958618573233
VGDKMKLHYGL	11	Unmodified	_VGDKMKLHYGL_					0	0	0			REV__nc|ENSG00000116748|P23109-2|AMPD1	REV__nc|ENSG00000116748|P23109-2|AMPD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5641174316406	3	420.897152	1259.66963	-0.21131	-8.894E-05	0.22313	9.3917E-05	0.011824	4.9768E-06	420.89720581540683	23.628	0.37867	23.628	23.39	23.769	0					21	12	2	0	0	0	0.3325	1	3454	3454		2.2527	0	1	53954	+		52024	14936	29671	29672	63836	63836					0.050180055881355656
VGDKTTATDI	10	Unmodified	_VGDKTTATDI_					0	0	0		ENSG00000134259|ENST00000369512|NGF	ENSG00000134259|ENST00000369512|NGF	ENSG00000134259|ENST00000369512|NGF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.7646484375	2	510.764029	1019.5135	0.28564	0.0001459	0.56079	0.00028643	0.84643	0.00043233	510.7641847090629	17.309	0.84521	17.248	16.859	17.704	-0.060429					70	29	3	0	0	0	0.40403	1	1633	1633		2.7352	0	1	214060			52025	3769	29672	29673	63837	63837					0.004528386184802002
VGDKYLLIYEF	11	Unmodified	_VGDKYLLIYEF_					0	0	0			REV__nc|ENSG00000086289|Q9UM22-3|EPDR1	REV__nc|ENSG00000086289|Q9UM22-3|EPDR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.7684326171875	3	453.911345	1358.7122	-0.12212	-5.5432E-05	0.7651	0.00034729	0.64298	0.00029186	454.24616680157993	65.047	0.36845	65.035	64.833	65.201	-0.011337					26	13	3	0	0	0	0.33146	1	16160	16160		4.1166	2.9018	1	180870	+		52026	13976	29673	29674	63838	63838					0.04719679197341975
VGDNRVVL	8	Unmodified	_VGDNRVVL_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.2533874511719	2	436.253434	870.492316	-0.18656	-8.1389E-05	0.43176	0.00018836	0.2452	0.00010697	436.2535093523861	26.091	1.0513	26.091	25.846	26.897	0					69	36	4	0	0	0	0.21687	1	4243	4243		57.471	1.2943	1	516120			52027	2811	29674	29675	63839	63839					0.051889181002820806
VGEEGSHL	8	Unmodified	_VGEEGSHL_					0	0	0			REV__ENST00000445430.5_1_3:195412816-195412894:+|nuORF	REV__ENST00000445430.5_1_3:195412816-195412894:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8974304199219	2	414.198325	826.382096	-0.11596	-4.8031E-05	-1.1217	-0.00046461	-1.2377	-0.00051264	414.1977568940309	18.526	0.077335	18.468	18.432	18.509	-0.058174					4	2	2	0	0	0	0.34297	1	1961	1961		2.8892	0	1	8294.5	+		52028	21074	29675	29676	63840	63840					-0.03803926958767079
VGELVFFWYL	10	Unmodified	_VGELVFFWYL_					0	0	0			REV__ENSG00000135973|ENST00000258456|GPR45	REV__ENSG00000135973|ENST00000258456|GPR45	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.89306640625	3	424.893625	1271.65905	-0.16111	-6.8453E-05	-0.2632	-0.00011183	-0.42431	-0.00018029	424.8933896139509	19.518	0.89531	19.402	19.005	19.9	-0.11592					91	30	4	0	0	0	0.36002	1	2218	2218		6.1918	0.40842	1	395310	+		52029	15776	29676	29677	63841	63841					0.03408346205333146
VGEPWIRRVT	10	Unmodified	_VGEPWIRRVT_					0	0	0		ENST00000263083.10_1_17:1946628-1946688:+|nuORF	ENST00000263083.10_1_17:1946628-1946688:+|nuORF	ENST00000263083.10_1_17:1946628-1946688:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.21966552734375	3	404.899773	1211.67749	-0.3651	-0.00014783	4.063	0.0016451	3.6979	0.0014973	404.90163057241074	28.516	0.16974	28.517	28.38	28.55	0.0004673					8	5	2	0	0	0	0.31926	1	4976	4976		1.4551	0	1	60727			52030	8996	29677	29678	63842	63842					0.08011900899896318
VGERLPAV	8	Unmodified	_VGERLPAV_					0	0	0			REV__nc|ENSG00000171617|O14682-2|ENC1	REV__nc|ENSG00000171617|O14682-2|ENC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.7450866699219	2	420.750527	839.486502	0.35198	0.00014809	1.2833	0.00053995	1.6353	0.00068804	420.75106368724147	55.664	0.48642	55.735	55.446	55.932	0.070885					27	17	2	0	0	0	0.33293	1	13228	13228		20.454	1.1966	1	243340	+		52031	17657	29678	29679	63843	63843					0.06033819588606093
VGESGLRN	8	Unmodified	_VGESGLRN_					0	0	0			REV__RPS6KA6|p.G625Sfs*19|1|0.06|ENSG00000072133|chrX:84096292-84096293|-/ATATGTAAGTGTTTTGA|frameshift_variant	REV__RPS6KA6|p.G625Sfs*19|1|0.06|ENSG00000072133|chrX:84096292-84096293|-/ATATGTAAGTGTTTTGA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.56219482421875	2	416.219591	830.42463	0.44075	0.00018345	-1.0664	-0.00044385	-0.62563	-0.0002604	416.2191393832018	21.237	0.59451	21.127	20.979	21.574	-0.11003					30	20	2	0	0	0	0.34247	1	2826	2826		8.5933	0	1	75595	+		52032	13755	29679	29680	63844	63844					0.002634681694758001
VGESGLRN	8	Unmodified	_VGESGLRN_					0	0	0			REV__RPS6KA6|p.G625Sfs*19|1|0.06|ENSG00000072133|chrX:84096292-84096293|-/ATATGTAAGTGTTTTGA|frameshift_variant	REV__RPS6KA6|p.G625Sfs*19|1|0.06|ENSG00000072133|chrX:84096292-84096293|-/ATATGTAAGTGTTTTGA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	416.219591	830.42463	0.075279	3.1333E-05	-0.66257	-0.00027578	-0.58729	-0.00024444	416.2195269063331	21.162	0.66212	21.162	20.883	21.545	0	0.013056	2.5009E-05	NaN	8.5933	39	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40586	+		52033	13755	29679	29680							0.002634681694758001
VGESHKSKYIP	11	Unmodified	_VGESHKSKYIP_					0	0	0			REV__ENST00000556666.5_1_14:88883017-88904763:+|nuORF	REV__ENST00000556666.5_1_14:88883017-88904763:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.8981018066406	3	415.559305	1243.65609	-0.16627	-6.9093E-05	-0.81554	-0.00033891	-0.98181	-0.000408	415.8935416900749	18.305	0.43601	18.305	18.127	18.563	0					23	14	2	0	0	0	0.33122	1	1853	1853		7.0371	0.41363	1	36370	+		52034	13532	29680	29681	63845	63845					0.04400471080521129
VGEVFIGFGK	10	Unmodified	_VGEVFIGFGK_					0	0	0			REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2847290039062	2	526.792392	1051.57023	0.65734	0.00034628	-0.6935	-0.00036533	-0.036161	-1.9049E-05	526.7919391391224	65.74	0.75036	65.729	65.53	66.28	-0.011337					37	26	2	0	0	0	0.35231	1	16487	16487		12.241	0.60036	1	352320	+		52035	23047	29681	29682	63846	63846					0.046509309656585174
VGEVLEQFI	9	Unmodified	_VGEVLEQFI_					0	0	0			REV__nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	REV__nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3184204101562	2	517.281857	1032.54916	0.27086	0.00014011	0.65826	0.00034051	0.92912	0.00048062	517.2821459223942	72.954	0.4348	73.008	72.765	73.2	0.053833					27	15	2	0	0	0	0.25323	1	18591	18591		6.2058	0	1	184980	+		52036	13975	29682	29683	63847	63847					0.03418920866147346
VGEVLEQFI	9	Unmodified	_VGEVLEQFI_					0	0	0			REV__nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	REV__nc|ENSG00000086232|Q9BQI3-2|EIF2AK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.3182373046875	2	517.281857	1032.54916	0.40769	0.00021089	1.924	0.00099524	2.3317	0.0012061	517.2821520473369	72.891	0.69348	72.862	72.516	73.209	-0.029305					37	24	2	0	0	0	0.2451	1	18563	18563		15.847	4.2069	1	221190	+		52037	13975	29682	29683	63848	63848					0.03418920866147346
VGEVQESPTFK	11	Unmodified	_VGEVQESPTFK_					0	0	0			REV__ENSG00000160161|ENST00000291495|CILP2	REV__ENSG00000160161|ENST00000291495|CILP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5438232421875	3	407.543432	1219.60847	-0.10374	-4.2277E-05	0.68576	0.00027948	0.58202	0.0002372	407.54381153789905	24.743	1.3473	24.743	24.367	25.714	0					174	45	6	0	0	0	0.35173	3	3862	3817;3862;3878		17.572	3.2085	1	2506400	+		52038	16881	29683	29684	63849;63850;63851	63850					0.007447720896607279
VGEVQESPTFK	11	Unmodified	_VGEVQESPTFK_					0	0	0			REV__ENSG00000160161|ENST00000291495|CILP2	REV__ENSG00000160161|ENST00000291495|CILP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5437316894531	3	407.543432	1219.60847	-0.10374	-4.2277E-05	0.68576	0.00027948	0.58202	0.0002372	407.54381153789905	24.743	1.3473	24.743	24.367	25.714	0					174	45	6	0	0	0	0.32466	1	3817	3817		14.838	1.3192	1	2506400	+		52039	16881	29683	29684	63852	63852					0.007447720896607279
VGFASYLL	8	Unmodified	_VGFASYLL_					0	0	0			REV__nc|ENSG00000204152|Q5SRD1-2|TIMM23B	REV__nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2508544921875	2	435.242004	868.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.44	1	69.506	69.006	70.006	0.066048								0	0	0	0.3683	1	17544	17544		6.3541	0.59368	1		+		52040	18036	29684	29685	63853	63853					0.029958989827946425
VGFGLSAR	8	Unmodified	_VGFGLSAR_					0	0	0			REV__ENST00000219400.7_1_16:81040410-81040575:-|nuORF	REV__ENST00000219400.7_1_16:81040410-81040575:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.2561340332031	2	403.729595	805.444637	-0.087555	-3.5348E-05	-0.066345	-2.6785E-05	-0.1539	-6.2134E-05	403.7296805643279	32.31	0.60314	32.365	32.136	32.739	0.054375					50	21	4	0	0	0	0.34167	1	6221	6221		7.2892	0	1	433730	+		52041	19419	29685	29686	63854	63854					0.034132639000858944
VGFKLHLLE	9	Unmodified	_VGFKLHLLE_					0	0	0			REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3167114257812	2	528.316035	1054.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.55	1	119.55	119.05	120.05	0								0	0	0	0.26334	1	30841	30841		2.0598	0.21551	1		+		52042	15008	29686	29687	63855	63855					0.09239210236682993
VGFKLHLLE	9	Unmodified	_VGFKLHLLE_					0	0	0			REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3170166015625	2	528.316035	1054.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.62	1	117.59	117.09	118.09	-0.024147								0	0	0	0.26334	1	30436	30436		2.0598	0.21551	1		+		52043	15008	29686	29687	63856	63856					0.09239210236682993
VGFKLHLLE	9	Unmodified	_VGFKLHLLE_					0	0	0			REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.316650390625	2	528.316035	1054.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.92	1	118.95	118.45	119.45	0.026253								0	0	0	0.26334	1	30781	30781		2.0598	0.21551	1		+		52044	15008	29686	29687	63857	63857					0.09239210236682993
VGFLAGPF	8	Unmodified	_VGFLAGPF_					0	0	0		ENST00000560962.5_1_15:63892664-63892859:-|nuORF	ENST00000560962.5_1_15:63892664-63892859:-|nuORF	ENST00000560962.5_1_15:63892664-63892859:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2157287597656	2	404.223614	806.432676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.557	1	29.569	29.069	30.069	0.012266								0	0	0	0.35779	1	5304	5304		11.114	0.93107	1				52045	11906	29687	29688	63858	63858					0.021716471568993256
VGFPMPRP	8	Unmodified	_VGFPMPRP_					0	0	0		ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	ENSG00000253958|ENST00000519106|CLDN23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7848815917969	2	450.741648	899.468743	0.097893	4.4125E-05	1.1785	0.00053119	1.2764	0.00057532	450.74208589338144	19.413	0.81088	19.297	19.058	19.869	-0.11592					46	27	2	0	0	0	0.344	1	2370	2370		2.5775	0.51773	1	183360			52046	8607	29688	29689	63859	63859					0.014987810621050812
VGFQSTRT	8	Unmodified	_VGFQSTRT_					0	0	0			REV__nc|ENSG00000143437|P27540-2|ARNT	REV__nc|ENSG00000143437|P27540-2|ARNT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.561279296875	2	448.235242	894.45593	0.15219	6.8215E-05	0.75861	0.00034004	0.9108	0.00040825	448.2356768400849	17.864	0.15245	17.864	17.746	17.898	0					6	4	2	0	0	0	0.34434	1	1747	1747		0.79363	0	1	11535	+		52047	16179	29689	29690	63860	63860					0.00448041203583216
VGFTDYLPLRV	11	Unmodified	_VGFTDYLPLRV_					0	0	0		ENSG00000181785|ENST00000641320|OR5AS1	ENSG00000181785|ENST00000641320|OR5AS1	ENSG00000181785|ENST00000641320|OR5AS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.2401123046875	3	427.239684	1278.69722	0.24742	0.00010571	0.14185	6.0604E-05	0.38927	0.00016631	427.2397433694279	51.046	0.43379	51.046	50.738	51.172	0					32	15	3	0	0	0	0.33122	1	11904	11904		7.0371	0	1	360710			52048	7246	29690	29691	63861	63861					0.06902232119955443
VGFTDYLPLRV	11	Unmodified	_VGFTDYLPLRV_					0	0	0		ENSG00000181785|ENST00000641320|OR5AS1	ENSG00000181785|ENST00000641320|OR5AS1	ENSG00000181785|ENST00000641320|OR5AS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	427.239684	1278.69722	0.089875	3.8398E-05	-0.12452	-5.3201E-05	-0.034648	-1.4803E-05	427.2393978281139	51.015	0.45148	51.062	50.794	51.245	0.046574	-0.02743	-0.00044977	NaN	12.228	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303540			52049	7246	29690	29691							0.06902232119955443
VGFTDYLPLRV	11	Unmodified	_VGFTDYLPLRV_					0	0	0		ENSG00000181785|ENST00000641320|OR5AS1	ENSG00000181785|ENST00000641320|OR5AS1	ENSG00000181785|ENST00000641320|OR5AS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	427.239684	1278.69722	0.17204	7.3501E-05	0.36967	0.00015794	0.54171	0.00023144	427.23966300224834	51.151	0.46542	51.16	50.807	51.272	0.0095673	0.070981	0.00018365	NaN	12.228	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261990			52050	7246	29690	29691							0.06902232119955443
VGGAEIVLI	9	Unmodified	_VGGAEIVLI_					0	0	0		ENST00000311956.8_1_11:46699560-46699605:-|nuORF	ENST00000311956.8_1_11:46699560-46699605:-|nuORF	ENST00000311956.8_1_11:46699560-46699605:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.76806640625	2	435.768386	869.522219	-0.068499	-2.985E-05	-0.39738	-0.00017317	-0.46588	-0.00020302	435.76812954780974	66.914	0.56266	66.914	66.63	67.193	0					51	19	3	0	0	0	0.24581	1	16750	16750		16.942	0	1	1162300			52051	9318	29691	29692	63862	63862					0.08223857045607019
VGGAGGGA	8	Unmodified	_VGGAGGGA_					0	0	0		ENST00000422989.5_1_19:44096586-44096790:-|nuORF	REV__ENSG00000162415|ENST00000359600|ZSWIM5	REV__ENSG00000162415|ENST00000359600|ZSWIM5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7752685546875	1	545.267801	544.260525	0.572	0.00031189	-0.45842	-0.00024996	0.11358	6.1931E-05	545.2681401958693	80.003	0.23401	80.064	79.975	80.209	0.061417					12	8	2	0	0	0	0.34434	1	20746	20746		0.79363	0	1	156160			52052	16981	29692	29693	63863	63863					-0.029835045306185748
VGGAGGGA	8	Unmodified	_VGGAGGGA_					0	0	0		ENST00000422989.5_1_19:44096586-44096790:-|nuORF	REV__ENSG00000162415|ENST00000359600|ZSWIM5	REV__ENSG00000162415|ENST00000359600|ZSWIM5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7750854492188	1	545.267801	544.260525	0.60522	0.00033001	-0.13697	-7.4684E-05	0.46826	0.00025533	545.2684154739409	80.049	0.39846	80.02	79.947	80.346	-0.028923					22	13	2	0	0	0	0.34434	1	20763	20763		0.79363	0	1	248520			52053	16981	29692	29693	63864	63864					-0.029835045306185748
VGGEVKKICLY	11	Unmodified	_VGGEVKKICLY_					0	0	0		ENST00000493656.1_1_6:37427445-37429528:+|nuORF	ENST00000493656.1_1_6:37427445-37429528:+|nuORF	ENST00000493656.1_1_6:37427445-37429528:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.56964111328125	3	403.56177	1207.66348	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.637	1	15.527	15.027	16.027	-0.10981								0	0	0	0.37109	1	1089	1089		1.4551	0	1				52054	11204	29693	29694	63865	63865					0.06795487356589547
VGGGGGAG	8	Unmodified	_VGGGGGAG_					0	0	0		ENST00000343376.8_1_19:10421250-10426607:-|nuORF	ENST00000343376.8_1_19:10421250-10426607:-|nuORF	ENST00000343376.8_1_19:10421250-10426607:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7606811523438	1	531.252151	530.244875	0.61593	0.00032721	3.3037	0.0017551	3.9197	0.0020823	531.2509099044994	40.039	0.15592	40.132	40.02	40.176	0.09267					6	4	2	0	0	0	0.34445	1	8470	8470		0	0	1	67592			52055	9544	29694	29695	63866	63866					-0.03903791047662253
VGGHLRPGIVQ	11	Unmodified	_VGGHLRPGIVQ_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.8323974609375	2	566.832914	1131.65128	0.028496	1.6153E-05	-0.3001	-0.00017011	-0.2716	-0.00015395	566.8327579527127	22.853	0.69859	22.853	22.446	23.145	0					36	23	2	0	0	0	0.41896	1	3270	3270		8.7454	3.0136	1	99428			52056	4464	29695	29696	63867	63867					0.0907163172842047
VGGHLRPGIVQ	11	Unmodified	_VGGHLRPGIVQ_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.8323974609375	2	566.832914	1131.65128	0.15603	8.8442E-05	-0.40611	-0.0002302	-0.25008	-0.00014176	566.832524779806	22.932	0.6528	22.845	22.512	23.165	-0.087608					37	22	2	0	0	0	0.41896	1	3294	3294		8.7454	3.0136	1	90768			52057	4464	29695	29696	63868	63868					0.0907163172842047
VGGIKANF	8	Unmodified	_VGGIKANF_					0	0	0			REV__nc|ENSG00000099139|Q92824-2|PCSK5	REV__nc|ENSG00000099139|Q92824-2|PCSK5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2206115722656	2	403.231971	804.449388	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.779	1	45.779	45.279	46.279	0								0	0	0	0.3683	1	10260	10260		6.3541	0	1		+		52058	14121	29696	29697	63869	63869					0.03934148042844754
VGGIWWFF	8	Unmodified	_VGGIWWFF_					0	0	0		nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;nc|ENSG00000164418|Q13002-2|GRIK2;ENST00000487395.1_1_6:102376237-102441071:+|nuORF;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000171189|P39086|GRIK1;ENSG00000171189|ENST00000327783|GRIK1	nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000171189|P39086-2|GRIK1	nc|ENSG00000164418|Q13002-4|GRIK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.77337646484375	2	506.257988	1010.50142	0.036323	1.8389E-05	1.2766	0.00064631	1.313	0.0006647	506.25900484139123	81.529	1.0934	81.598	81.195	82.289	0.068993					81	50	3	0	0	0	0.34147	1	21430	21430		11.114	1.7313	1	264750			52059	5843;6521	29697	29698	63870	63870					-0.003406885433946627
VGGLFSEMRRG	11	Unmodified	_VGGLFSEMRRG_					0	0	0			REV__nc|ENSG00000211780|A0A075B6T7|TRAV6	REV__nc|ENSG00000211780|A0A075B6T7|TRAV6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.56085205078125	3	403.545002	1207.61318	-0.039595	-1.5978E-05	-1.0253	-0.00041374	-1.0649	-0.00042972	403.8803644709393	23.789	0.14197	23.75	23.651	23.793	-0.038927					6	4	2	0	0	0	0.33238	1	3554	3554		1.3296	0	1	28006	+		52060	23182	29698	29699	63871	63871					0.01767377751434651
VGGLRQRG	8	Unmodified	_VGGLRQRG_					0	0	0			REV__ENST00000528927.5_1_11:418373-431830:-|nuORF	REV__ENST00000528927.5_1_11:418373-431830:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.75115966796875	2	421.751393	841.488233	-0.011083	-4.6743E-06	0.062758	2.6468E-05	0.051674	2.1794E-05	421.751316250971	68.105	2.9382	68.088	66.631	69.569	-0.016716					195	104	2	0	0	0	0.45169	2	17099	17099;17156		5.2307	0.47466	1	488640	+		52061	18355	29699	29700	63872;63873	63872					0.061148733972345326
VGGPDPYL	8	Unmodified	_VGGPDPYL_					0	0	0		ENSG00000134698|ENST00000373210|AGO4	ENSG00000134698|ENST00000373210|AGO4	ENSG00000134698|ENST00000373210|AGO4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.2166442871094	2	409.208161	816.401769	-0.059129	-2.4196E-05	-1.6742	-0.00068509	-1.7333	-0.00070928	409.2085241255827	27.326	0.51472	27.315	26.984	27.499	-0.01156					25	17	3	0	0	0	0.44842	1	4554	4554		6.3541	0.59368	1	40304			52062	3802	29700	29701	63874	63874					-0.013775509480069559
VGGQLTFTI	9	Unmodified	_VGGQLTFTI_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7713317871094	2	468.263468	934.512382	0.0091876	4.3022E-06	0.020868	9.7718E-06	0.030056	1.4074E-05	468.2634238737703	39.527	0.52693	39.62	39.36	39.887	0.09267					26	18	2	0	0	0	0.1524	1	8318	8318		32.305	0	1	237570			52063	7881	29701	29702	63875	63875					0.04250669040231969
VGGRNKLK	8	Unmodified	_VGGRNKLK_					0	0	0		ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2	ENSG00000109756|ENST00000691494|RAPGEF2	ENSG00000109756|ENST00000691494|RAPGEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.5793151855469	2	436.277244	870.539935	-0.04489	-1.9584E-05	0.19485	8.501E-05	0.14996	6.5426E-05	436.27729585231475	22.295	0.36624	22.195	21.917	22.284	-0.10034					15	13	2	0	0	0	0.3439	1	3123	3123		2.8892	0	1	34818			52064	2269	29702	29703	63876	63876					0.09948617091140477
VGGRQRGI	8	Unmodified	_VGGRQRGI_					0	0	0			REV__ENST00000557815.1_1_15:70350845-70351103:-|nuORF	REV__ENST00000557815.1_1_15:70350845-70351103:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5009765625	2	421.751393	841.488233	-0.29629	-0.00012496	1.0837	0.00045706	0.78744	0.0003321	421.75166437014843	14.307	0.22487	14.241	14.124	14.349	-0.066068					12	7	2	0	0	0	0.34434	1	680	680		0.79363	0	1	18658	+		52065	22272	29703	29704	63877	63877					0.06114873397245901
VGGWLLCL	8	Unmodified	_VGGWLLCL_					0	0	0		nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;ENST00000438961.1_1_7:766900-790557:+|nuORF	nc|ENSG00000164818|Q86Y56-2|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8876037597656	2	430.738574	859.462595	-1.325	-0.00057074	-4.222	-0.0018186	-5.547	-0.0023893	430.7369966532495	34.544	0.24266	34.619	34.47	34.713	0.075306					10	8	2	0	0	0	0.34297	1	6844	6844		6.3541	0.59368	1	40021			52066	5879	29704	29705	63878	63878					0.027242628305771177
VGHAHVSYPRS	11	Unmodified	_VGHAHVSYPRS_					0	0	0			REV__HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	REV__HEPH|p.L959Gfs*4|1|0.05|ENSG00000089472|chrX:66256307-66256308|TC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.49700927734375	3	403.875628	1208.60505	-0.040829	-1.649E-05	4.3662	0.0017634	4.3253	0.0017469	403.87727154558524	36.024	0.27113	36.106	35.9	36.171	0.082355					11	9	2	0	0	0	0.33236	1	7289	7289		2.4348	1.2414	1	70319	+		52067	14030	29705	29706	63879	63879					0.00909566826317132
VGHDEISRCSL	11	Unmodified	_VGHDEISRCSL_					0	0	0		ENSG00000145241|ENST00000273853|CENPC;ENST00000510189.5_1_4:68359569-68411187:-|nuORF	ENSG00000145241|ENST00000273853|CENPC	ENSG00000145241|ENST00000273853|CENPC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.5418395996094	3	405.8644	1214.57137	-0.090371	-3.6678E-05	-0.021087	-8.5585E-06	-0.11146	-4.5237E-05	405.8641242173116	21.699	0.1098	21.699	21.654	21.763	0					5	3	2	0	0	0	0.33085	1	2932	2932		5.0475	0	1	24653			52068	4638	29706	29707	63880	63880					-0.027332227277156562
VGHEQVDL	8	Unmodified	_VGHEQVDL_					0	0	0		ENSG00000101680|ENST00000389658|LAMA1;ENST00000579014.5_1_18:6942080-7042306:-|nuORF	ENSG00000101680|ENST00000389658|LAMA1	ENSG00000101680|ENST00000389658|LAMA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7875671386719	2	448.727249	895.439946	0.26711	0.00011986	-0.12027	-5.3968E-05	0.14684	6.5893E-05	448.72723727870437	21.739	0.44011	21.638	21.364	21.804	-0.10034					25	15	2	0	0	0	0.34272	1	2954	2954		7.9102	0	1	51668			52069	1716	29707	29708	63881	63881					-0.011956650333331709
VGHHASSI	8	Unmodified	_VGHHASSI_					0	0	0		ENSG00000108387|ENST00000672673|SEPTIN4;nc|ENSG00000108387|O43236-8|SEPTIN4	ENSG00000108387|ENST00000672673|SEPTIN4	ENSG00000108387|ENST00000672673|SEPTIN4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.22161865234375	2	404.209027	806.403501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.035	1	19.979	19.479	20.479	-0.055693								0	0	0	0.36961	1	2413	2413		5.7604	2.8712	1				52070	2182	29708	29709	63882	63882					-0.007444971393738342
VGHKQVVALIR	11	Unmodified	_VGHKQVVALIR_					0	0	0		ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3;ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.55328369140625	3	407.259302	1218.75608	-0.21978	-8.9506E-05	-0.24348	-9.9159E-05	-0.46325	-0.00018866	407.25919878480516	17.242	0.57652	17.125	16.746	17.323	-0.11739					34	20	2	0	0	0	0.33346	1	1468	1468		0.50596	0.34663	1	46318			52071	8599	29709	29710	63883	63883					0.1554475320497204
VGHKQVVALIR	11	Unmodified	_VGHKQVVALIR_					0	0	0		ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3;ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	407.259302	1218.75608	-0.10461	-4.2605E-05	-0.17632	-7.1808E-05	-0.28093	-0.00011441	407.25923689735225	17.042	0.48664	17.042	16.81	17.296	0	-0.046334	8.3313E-05	NaN	0.50596	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49944			52072	8599	29709	29710							0.1554475320497204
VGHKQVVALIR	11	Unmodified	_VGHKQVVALIR_					0	0	0		ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3;ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	407.259302	1218.75608	0.063554	2.5883E-05	-0.29416	-0.0001198	-0.2306	-9.3915E-05	407.2591344231867	17.158	0.63009	17.097	16.784	17.414	-0.060429	0.0093906	-6.0657E-05	NaN	0.50596	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57726			52073	8599	29709	29710							0.1554475320497204
VGHLHRANSEK	11	Unmodified	_VGHLHRANSEK_					0	0	0		ENST00000429411.5_1_22:26868313-26868355:-|nuORF	ENST00000429411.5_1_22:26868313-26868355:-|nuORF	ENST00000429411.5_1_22:26868313-26868355:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.1829833984375	3	416.558299	1246.65307	-0.13219	-5.5065E-05	-2.5644	-0.0010682	-2.6965	-0.0011233	416.5574447459727	24.861	0.80415	24.83	24.515	25.319	-0.031408					46	27	3	0	0	0	0.33146	1	3880	3880		6.6235	2.7471	1	72697			52074	10451	29710	29711	63884	63884					0.039606407463679716
VGHLSTSL	8	Unmodified	_VGHLSTSL_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.5691223144531	2	407.226885	812.439217	-0.17728	-7.2194E-05	-0.040342	-1.6428E-05	-0.21762	-8.8622E-05	407.2267367931571	15.885	1.0688	15.823	15.426	16.495	-0.062534					66	36	2	0	0	0	0.34319	1	1074	1074		5.7604	0.52976	1	104600			52075	717	29711	29712	63885	63885					0.025495403176250875
VGHPDPAL	8	Unmodified	_VGHPDPAL_					0	0	0		ENSG00000084092|ENST00000264230|NOA1	ENSG00000084092|ENST00000264230|NOA1	ENSG00000084092|ENST00000264230|NOA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.2217102050781	2	403.213778	804.413003	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.698	1	17.698	17.198	18.198	0								0	0	0	0.3683	1	1708	1708		6.3541	0	1				52076	1239	29712	29713	63886	63886					0.0029727114614388483
VGHRRKERPDA	11	Unmodified	_VGHRRKERPDA_					0	0	0		ENST00000493001.1_1_2:224759053-224760271:-|nuORF	ENST00000493001.1_1_2:224759053-224760271:-|nuORF	ENST00000493001.1_1_2:224759053-224760271:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.76617431640625	3	440.912964	1319.71706	-0.24761	-0.00010917	-2.1232	-0.00093613	-2.3708	-0.0010453	440.9117461676656	13.387	0.7067	13.287	12.785	13.492	-0.099291					25	24	2	0	0	0	0.33348	1	313	313		0.40827	0.24894	1	26255			52077	11196	29713	29714	63887	63887					0.06999420903321152
VGHVRPLTQ	9	Unmodified	_VGHVRPLTQ_					0	0	0			REV__ENST00000264956.10_2_4:5813500-5814718:+|nuORF	REV__ENST00000264956.10_2_4:5813500-5814718:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.8058166503906	2	503.793258	1005.57196	0.18361	9.2501E-05	0.33775	0.00017016	0.52136	0.00026266	503.7932671594475	26.166	0.80442	26.166	25.925	26.729	0					54	27	3	0	0	0	0.25989	1	4369	4369		14.838	3.198	1	560020	+		52078	19643	29714	29715	63888	63888					0.06939984774271579
VGHVRPLTQ	9	Unmodified	_VGHVRPLTQ_					0	0	0			REV__ENST00000264956.10_2_4:5813500-5814718:+|nuORF	REV__ENST00000264956.10_2_4:5813500-5814718:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.80596923828125	2	503.793258	1005.57196	0.14829	7.4706E-05	0.21041	0.000106	0.3587	0.00018071	503.7932204428919	26.146	0.64443	26.108	25.902	26.547	-0.038671					53	22	3	0	0	0	0.25989	1	4329	4329		14.838	0	1	588090	+		52079	19643	29714	29715	63889	63889					0.06939984774271579
VGIAQLASKF	10	Unmodified	_VGIAQLASKF_					0	0	0			REV__nc|ENSG00000107902|Q9H008-2|LHPP	REV__nc|ENSG00000107902|Q9H008-2|LHPP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3056030273438	2	517.305667	1032.59678	0.5424	0.00028058	-1.8648	-0.00096466	-1.3224	-0.00068408	517.3053505992054	40.594	0.67707	40.594	40.283	40.96	0					88	24	5	0	0	0	0.11922	1	8682	8682		43.858	0	1	845430	+		52080	14572	29715	29716	63890	63890					0.08178619856971636
VGIAQLASKF	10	Unmodified	_VGIAQLASKF_					0	0	0			REV__nc|ENSG00000107902|Q9H008-2|LHPP	REV__nc|ENSG00000107902|Q9H008-2|LHPP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.3056640625	2	517.305667	1032.59678	0.51265	0.00026519	-0.44794	-0.00023172	0.064703	3.3471E-05	517.3053919360046	40.286	0.62802	40.379	40.09	40.718	0.09267					54	22	3	0	0	0	0.11922	1	8616	8616		43.858	11.553	1	1244400	+		52081	14572	29715	29716	63891	63891					0.08178619856971636
VGIAQLASKF	10	Unmodified	_VGIAQLASKF_					0	0	0			REV__nc|ENSG00000107902|Q9H008-2|LHPP	REV__nc|ENSG00000107902|Q9H008-2|LHPP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.3056640625	2	517.305667	1032.59678	0.41782	0.00021614	-1.3001	-0.00067253	-0.88224	-0.00045639	517.3054197356751	40.264	0.66053	40.364	40.09	40.75	0.099407					85	23	5	0	0	0	0.11922	1	8593	8593		43.858	1.7637	1	1435800	+		52082	14572	29715	29716	63892	63892					0.08178619856971636
VGIAQLASKF	10	Unmodified	_VGIAQLASKF_					0	0	0			REV__nc|ENSG00000107902|Q9H008-2|LHPP	REV__nc|ENSG00000107902|Q9H008-2|LHPP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	517.305667	1032.59678	0.5424	0.00028058	-1.8648	-0.00096466	-1.3224	-0.00068408	517.3053505992054	40.594	0.67707	40.594	40.283	40.96	0	0.14842	-0.0013556	NaN	43.858	88	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	845430	+		52083	14572	29715	29716							0.08178619856971636
VGIAQLASKF	10	Unmodified	_VGIAQLASKF_					0	0	0			REV__nc|ENSG00000107902|Q9H008-2|LHPP	REV__nc|ENSG00000107902|Q9H008-2|LHPP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	517.305667	1032.59678	0.51265	0.00026519	-0.44794	-0.00023172	0.064703	3.3471E-05	517.3053919360046	40.286	0.62802	40.379	40.09	40.718	0.09267	-0.06666	0.00011024	NaN	43.858	54	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1244400	+		52084	14572	29715	29716							0.08178619856971636
VGIAQLASKF	10	Unmodified	_VGIAQLASKF_					0	0	0			REV__nc|ENSG00000107902|Q9H008-2|LHPP	REV__nc|ENSG00000107902|Q9H008-2|LHPP	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	517.305667	1032.59678	0.41782	0.00021614	-1.3001	-0.00067253	-0.88224	-0.00045639	517.3054197356751	40.264	0.66053	40.364	40.09	40.75	0.099407	-0.081756	-0.00077137	NaN	43.858	85	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1435800	+		52085	14572	29715	29716							0.08178619856971636
VGIFGALMK	9	Unmodified	_VGIFGALMK_					0	0	0			REV__ENSG00000279051|ENST00000302622|OR6Q1	REV__ENSG00000279051|ENST00000302622|OR6Q1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7715148925781	2	468.272781	934.531009	0.22002	0.00010303	0.29822	0.00013965	0.51823	0.00024267	468.27289261524714	39.441	0.58176	39.541	39.262	39.844	0.099407					28	20	2	0	0	0	0.24913	1	8306	8306		12.532	2.3482	1	217110	+		52086	19352	29716	29717	63893	63893					0.06112507410443868
VGIKTRQMLFR	11	Unmodified	_VGIKTRQMLFR_					0	0	0		ENST00000471770.5_1_7:123181126-123181177:-|nuORF	ENST00000471770.5_1_7:123181126-123181177:-|nuORF	ENST00000471770.5_1_7:123181126-123181177:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.88861083984375	3	450.26758	1347.78091	0.16356	7.3644E-05	-2.0639	-0.00092928	-1.9003	-0.00085564	450.6007874410056	43.684	0.16294	43.684	43.63	43.793	0					6	5	2	0	0	0	0.3325	1	9637	9637		1.0136	0	1	102730			52087	10881	29717	29718	63894	63894					0.12093065016051696
VGILWTVFVLL	11	Unmodified	_VGILWTVFVLL_					0	0	0			REV__ENSG00000188000|ENST00000641288|OR7D2	REV__ENSG00000188000|ENST00000641288|OR7D2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.8889465332031	3	420.59692	1258.76893	-0.28334	-0.00011917	-0.83133	-0.00034965	-1.1147	-0.00046883	420.596603072298	13.905	0.40497	13.839	13.632	14.037	-0.066068					15	8	3	0	0	0	0.33347	1	615	615		0.45452	0	1	47179	+		52088	18534	29718	29719	63895	63895					0.14989771544514952
VGILWTVFVLL	11	Unmodified	_VGILWTVFVLL_					0	0	0			REV__ENSG00000188000|ENST00000641288|OR7D2	REV__ENSG00000188000|ENST00000641288|OR7D2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	420.59692	1258.76893	-0.36584	-0.00015387	-0.50513	-0.00021246	-0.87097	-0.00036633	420.5966898626818	13.868	0.25189	13.868	13.74	13.992	0	0.019058	0.00016226	NaN	0.45452	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35670	+		52089	18534	29718	29719							0.14989771544514952
VGILWTVFVLL	11	Unmodified	_VGILWTVFVLL_					0	0	0			REV__ENSG00000188000|ENST00000641288|OR7D2	REV__ENSG00000188000|ENST00000641288|OR7D2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	420.59692	1258.76893	-0.31993	-0.00013456	-1.1421	-0.00048036	-1.462	-0.00061492	420.5967097036424	13.945	0.27835	13.84	13.713	13.991	-0.10466	-0.0091347	-0.00064146	NaN	0.45452	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22100	+		52090	18534	29718	29719							0.14989771544514952
VGIPEVVQPI	10	Unmodified	_VGIPEVVQPI_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8246459960938	2	525.813325	1049.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.865	1	37.963	37.463	38.463	0.097527								0	0	0	0.32365	1	7832	7832		24.991	11.085	1		+		52091	19094	29719	29720	63896	63896					0.08927486654192762
VGKALAPW	8	Unmodified	_VGKALAPW_					0	0	0		ENST00000541627.2_1_12:133201285-133201883:-|nuORF;ENST00000534922.5_1_12:133201238-133201883:-|nuORF	ENST00000541627.2_1_12:133201285-133201883:-|nuORF	ENST00000541627.2_1_12:133201285-133201883:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.8948669433594	2	421.250163	840.485774	-0.35764	-0.00015066	-4.1991	-0.0017689	-4.5567	-0.0019195	421.2477133450781	13.053	0.45442	12.986	12.791	13.245	-0.067496					38	15	3	0	0	0	0.3439	1	277	277		2.8892	0.31174	1	59283			52092	11666	29720	29721	63897	63897					0.05915024939554314
VGKEAGRAP	9	Unmodified	_VGKEAGRAP_					0	0	0		ENST00000460436.6_2_X:129267368-129270026:-|nuORF	ENST00000460436.6_2_X:129267368-129270026:-|nuORF	ENST00000460436.6_2_X:129267368-129270026:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7690124511719	2	442.751059	883.487565	0.14433	6.3903E-05	-0.14741	-6.5264E-05	-0.0030745	-1.3612E-06	442.75122766800706	17.615	0.34845	17.554	17.444	17.792	-0.060429					14	11	2	0	0	0	0.25938	1	1704	1704		4.3292	0	1	29044			52093	10728	29721	29722	63898	63898					0.0411603395750717
VGKEKIGH	8	Unmodified	_VGKEKIGH_					0	0	0			REV__ENSG00000050327|ENST00000056217|ARHGEF5	REV__ENSG00000050327|ENST00000056217|ARHGEF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.5711975097656	2	434.255977	866.497401	-0.12376	-5.3744E-05	-0.17067	-7.4113E-05	-0.29443	-0.00012786	434.25603307411797	19.452	0.3439	19.336	19.031	19.375	-0.11592					15	11	2	0	0	0	0.34408	1	2223	2223		0.6015	0.076735	1	20515	+		52094	13562	29722	29723	63899	63899					0.05881221962897598
VGKETWLPRSH	11	Unmodified	_VGKETWLPRSH_					0	0	0		nc|ENSG00000198373|O00308-3|WWP2;nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2	nc|ENSG00000198373|O00308-3|WWP2	nc|ENSG00000198373|O00308-3|WWP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.5871887207031	3	437.238566	1308.69387	-0.094576	-4.1352E-05	-3.2932	-0.0014399	-3.3878	-0.0014813	437.2373011796181	16.64	0.51149	16.64	16.267	16.779	0					27	17	3	0	0	0	0.33346	1	1288	1288		0.50596	0.09769	1	42746			52095	8065	29723	29724	63900	63900					0.05186982065970369
VGKETWLPRSH	11	Unmodified	_VGKETWLPRSH_					0	0	0		nc|ENSG00000198373|O00308-3|WWP2;nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2	nc|ENSG00000198373|O00308-3|WWP2	nc|ENSG00000198373|O00308-3|WWP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	437.238566	1308.69387	-0.16824	-7.3563E-05	-3.544	-0.0015496	-3.7122	-0.0016231	437.2369327075567	16.815	0.44175	16.701	16.362	16.803	-0.11434	0.030469	-0.00015049	NaN	0.50596	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58490			52096	8065	29723	29724							0.05186982065970369
VGKRLLQAKDV	11	Unmodified	_VGKRLLQAKDV_					0	0	0			REV__ENSG00000105398|ENST00000222002|SULT2A1	REV__ENSG00000105398|ENST00000222002|SULT2A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.8912048339844	3	409.590828	1225.75066	-0.2682	-0.00010985	0.17781	7.2829E-05	-0.090393	-3.7024E-05	409.5908684254639	13.433	0.39693	13.334	13.069	13.466	-0.099291					22	13	2	0	0	0	0.33326	1	372	372		1.4551	0	1	43509	+		52097	14455	29724	29725	63901	63901					0.14681029622511232
VGKRPPTS	8	Unmodified	_VGKRPPTS_					0	0	0		ENST00000297469.3_1_7:1126844-1131054:+|nuORF	ENST00000297469.3_1_7:1126844-1131054:+|nuORF	ENST00000297469.3_1_7:1126844-1131054:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.8948059082031	2	421.248152	840.481751	-0.38556	-0.00016242	-0.35792	-0.00015077	-0.74347	-0.00031319	421.24784946787634	12.995	0.46742	12.995	12.815	13.282	0					25	16	2	0	0	0	0.344	1	268	268		2.5775	0	1	54899			52098	9199	29725	29726	63902	63902					0.055129354458472335
VGKVGLIQA	9	Unmodified	_VGKVGLIQA_					0	0	0		ENSG00000213901|ENST00000409878|SLC23A3;nc|ENSG00000213901|Q6PIS1-5|SLC23A3	ENSG00000213901|ENST00000409878|SLC23A3	ENSG00000213901|ENST00000409878|SLC23A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.7750244140625	2	442.781828	883.549102	-0.076359	-3.381E-05	0.6558	0.00029038	0.57944	0.00025657	442.78198781984224	15.221	0.53059	15.111	14.905	15.436	-0.10981					40	18	3	0	0	0	0.21905	1	907	907		23.148	1.4018	1	255010			52099	8367	29726	29727	63903	63903					0.10266965656796856
VGKVGLIQA	9	Unmodified	_VGKVGLIQA_					0	0	0		ENSG00000213901|ENST00000409878|SLC23A3;nc|ENSG00000213901|Q6PIS1-5|SLC23A3	ENSG00000213901|ENST00000409878|SLC23A3	ENSG00000213901|ENST00000409878|SLC23A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.77496337890625	2	442.781828	883.549102	-0.061009	-2.7014E-05	0.85352	0.00037792	0.79251	0.00035091	442.782038755425	15.212	0.5614	15.148	14.984	15.545	-0.064414					38	18	3	0	0	0	0.21905	1	913	913		16.942	0	1	225270			52100	8367	29726	29727	63904	63904					0.10266965656796856
VGKVGLIQA	9	Unmodified	_VGKVGLIQA_					0	0	0		ENSG00000213901|ENST00000409878|SLC23A3;nc|ENSG00000213901|Q6PIS1-5|SLC23A3	ENSG00000213901|ENST00000409878|SLC23A3	ENSG00000213901|ENST00000409878|SLC23A3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	442.781828	883.549102	-0.075723	-3.3529E-05	0.86834	0.00038449	0.79262	0.00035096	442.78203795240466	15.101	0.60286	15.101	14.925	15.528	0	-0.019278	8.5726E-05	NaN	23.148	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251270			52101	8367	29726	29727							0.10266965656796856
VGKYWVMK	8	Unmodified	_VGKYWVMK_					0	0	0			REV__ENSG00000172244|ENST00000306862|C5orf34	REV__ENSG00000172244|ENST00000306862|C5orf34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7783203125	2	505.778231	1009.54191	0.28156	0.00014241	0.029231	1.4785E-05	0.3108	0.00015719	505.7781135288874	21.799	0.78622	21.799	21.517	22.303	0					67	28	3	0	0	0	0.45169	1	2950	2950		5.2307	5.2307	1	300490	+		52102	17702	29727	29728	63905	63905					0.03751909784716645
VGLAAYELF	9	Unmodified	_VGLAAYELF_					0	0	0		nc|ENSG00000086200|Q9UI26-2|IPO11;ENSG00000086200|ENST00000325324|IPO11	nc|ENSG00000086200|Q9UI26-2|IPO11	nc|ENSG00000086200|Q9UI26-2|IPO11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.28125	2	491.765843	981.517133	0.3641	0.00017905	-1.1469	-0.00056399	-0.78277	-0.00038494	491.7654303045276	76.688	0.40454	76.688	76.474	76.879	0					22	14	2	0	0	0	0.055495	1	19771	19771		50.855	0	1	142360			52103	1278	29728	29729	63906	63906					0.025635531829948377
VGLAAYELF	9	Unmodified	_VGLAAYELF_					0	0	0		nc|ENSG00000086200|Q9UI26-2|IPO11;ENSG00000086200|ENST00000325324|IPO11	nc|ENSG00000086200|Q9UI26-2|IPO11	nc|ENSG00000086200|Q9UI26-2|IPO11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2811584472656	2	491.765843	981.517133	0.19251	9.467E-05	-0.8119	-0.00039927	-0.61939	-0.0003046	491.76555044391824	76.677	0.37785	76.73	76.512	76.89	0.053413					24	13	2	0	0	0	0.055495	1	19750	19750		50.855	0	1	126300			52104	1278	29728	29729	63907	63907					0.025635531829948377
VGLAAYELF	9	Unmodified	_VGLAAYELF_					0	0	0		nc|ENSG00000086200|Q9UI26-2|IPO11;ENSG00000086200|ENST00000325324|IPO11	nc|ENSG00000086200|Q9UI26-2|IPO11	nc|ENSG00000086200|Q9UI26-2|IPO11	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.765843	981.517133	0.52588	0.00025861	-2.1943	-0.0010791	-1.6684	-0.00082045	491.76534121128736	76.729	0.45416	76.697	76.422	76.877	-0.031487	-0.0080075	-0.00093902	NaN	50.855	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128670			52105	1278	29728	29729							0.025635531829948377
VGLAEHAAT	9	Unmodified	_VGLAEHAAT_					0	0	0		ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8821716308594	2	434.729792	867.445031	-0.3423	-0.00014881	-0.4443	-0.00019315	-0.7866	-0.00034196	434.72949614331867	15.47	0.568	15.406	15.1	15.668	-0.064413					24	18	2	0	0	0	0.26117	1	1085	1085		2.3027	0	1	46024			52106	7113	29729	29730	63908	63908					0.006006388292689735
VGLDLLSL	8	Unmodified	_VGLDLLSL_					0	0	0			REV__ENST00000311922.3_1_8:126448920-126449082:+|nuORF	REV__ENST00000311922.3_1_8:126448920-126449082:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.734130859375	2	415.255111	828.49567	-0.74262	-0.00030838	3.5579	0.0014774	2.8153	0.0011691	415.2553216323831	34.827	0.28086	34.904	34.78	35.06	0.077377					16	9	3	0	0	0	0.34319	1	6949	6949		2.5775	0	1	54809	+		52107	14274	29730	29731	63909	63909					0.07456168154294573
VGLGARVF	8	Unmodified	_VGLGARVF_					0	0	0		ENST00000376980.7_1_10:22292584-22292623:-|nuORF	ENST00000376980.7_1_10:22292584-22292623:-|nuORF	ENST00000376980.7_1_10:22292584-22292623:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.2244873046875	2	409.747788	817.481023	0.31521	0.00012916	0.52248	0.00021408	0.83769	0.00034324	409.74772311737854	47.592	0.15653	47.64	47.539	47.695	0.047523					7	5	2	0	0	0	0.34297	1	10823	10823		6.3541	0	1	87234			52108	9927	29731	29732	63910	63910					0.06498140796804819
VGLGGRER	8	Unmodified	_VGLGGRER_					0	0	0			REV__ENST00000420343.1_1_5:156569472-156569760:-|nuORF	REV__ENST00000420343.1_1_5:156569472-156569760:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.7092590332031	2	422.243401	842.472249	-0.36948	-0.00015601	0.38843	0.00016401	0.018954	8.0034E-06	422.2435209983558	13.338	0.53461	13.239	13.129	13.663	-0.09929					39	18	3	0	0	0	0.34185	1	482	482		5.7604	0	1	162320	+		52109	20852	29732	29733	63911	63911					0.044711671603295144
VGLGGRER	8	Unmodified	_VGLGGRER_					0	0	0			REV__ENST00000420343.1_1_5:156569472-156569760:-|nuORF	REV__ENST00000420343.1_1_5:156569472-156569760:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7092590332031	2	422.243401	842.472249	-0.36082	-0.00015236	0.29475	0.00012446	-0.066073	-2.7899E-05	422.24350453645803	13.355	0.52405	13.287	13.162	13.686	-0.067496					37	18	3	0	0	0	0.33995	1	493	493		15.768	0	1	186410	+		52110	20852	29732	29733	63912	63912					0.044711671603295144
VGLGRKRSSRS	11	Unmodified	_VGLGRKRSSRS_					0	0	0		ENST00000353703.8_2_20:43514450-43530178:+|nuORF;ENST00000428262.1_3_20:43514450-43516249:+|nuORF;ENST00000372839.7_2_20:43514450-43530188:+|nuORF	ENST00000353703.8_2_20:43514450-43530178:+|nuORF	ENST00000353703.8_2_20:43514450-43530178:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.8576049804688	2	601.857452	1201.70035	0.46856	0.000282	0.4855	0.0002922	0.95406	0.00057421	601.8574658214237	94.177	0.62511	94.177	93.908	94.534	-0.00051117					94	46	3	0	0	0	0.46277	1	25110	25110		2.9952	0.26005	1	353080			52111	9585	29733	29734	63913	63913					0.10756920017365701
VGLHIKAV	8	Unmodified	_VGLHIKAV_					0	0	0		ENST00000463634.6_1_6:4041126-4056780:+|nuORF;ENSG00000112739|ENST00000337659|PRPF4B;ENST00000466185.1_1_6:4052221-4056689:+|nuORF	ENST00000463634.6_1_6:4041126-4056780:+|nuORF	ENST00000463634.6_1_6:4041126-4056780:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.23382568359375	2	418.771263	835.527973	-1.3522	-0.00056625	0.30529	0.00012785	-1.0469	-0.00043841	418.77126999648453	34.807	0.99198	34.807	34.5	35.492	0					78	35	3	0	0	0	0.3439	1	6819	6819		2.8892	0.31174	1	511790			52112	2457	29734	29735	63914	63914					0.10363000347945217
VGLHTRPVRLL	11	Unmodified	_VGLHTRPVRLL_					0	0	0			REV__ENST00000268699.8_3_16:90109761-90110142:+|nuORF	REV__ENST00000268699.8_3_16:90109761-90110142:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.93463134765625	3	420.934818	1259.78262	0.25409	0.00010695	-0.068056	-2.8647E-05	0.18603	7.8307E-05	420.93473861684106	31.945	1.2506	31.987	31.683	32.934	0.042366					117	44	3	0	0	0	0.43198	1	6100	6100		7.0371	0	1	1068100	+		52113	19668	29735	29736	63915	63915					0.1631244209631859
VGLKNLSV	8	Unmodified	_VGLKNLSV_					0	0	0		ENSG00000134250|ENST00000256646|NOTCH2;NOTCH2|p.T2295Yfs*19|1|0.25|ENSG00000134250|chr1:119915839-119915840|-/TATA|frameshift_variant	ENSG00000134250|ENST00000256646|NOTCH2	ENSG00000134250|ENST00000256646|NOTCH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.9065856933594	2	415.260728	828.506903	-0.041843	-1.7376E-05	0.068536	2.846E-05	0.026693	1.1084E-05	415.26073151187586	40.809	0.51995	40.809	40.576	41.096	0					34	18	2	0	0	0	0.26527	1	8690	8690		36.044	1.9418	1	417730			52114	3766	29736	29737	63916	63916					0.08578990248429363
VGLKNLSV	8	Unmodified	_VGLKNLSV_					0	0	0		ENSG00000134250|ENST00000256646|NOTCH2;NOTCH2|p.T2295Yfs*19|1|0.25|ENSG00000134250|chr1:119915839-119915840|-/TATA|frameshift_variant	ENSG00000134250|ENST00000256646|NOTCH2	ENSG00000134250|ENST00000256646|NOTCH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.9066162109375	2	415.260728	828.506903	0.41488	0.00017228	-0.50797	-0.00021094	-0.093084	-3.8654E-05	415.2605185708069	40.649	0.55724	40.741	40.474	41.031	0.09267					45	20	3	0	0	0	0.23297	1	8664	8664		44.407	2.3125	1	378660			52115	3766	29736	29737	63917	63917					0.08578990248429363
VGLKNLSV	8	Unmodified	_VGLKNLSV_					0	0	0		ENSG00000134250|ENST00000256646|NOTCH2;NOTCH2|p.T2295Yfs*19|1|0.25|ENSG00000134250|chr1:119915839-119915840|-/TATA|frameshift_variant	ENSG00000134250|ENST00000256646|NOTCH2	ENSG00000134250|ENST00000256646|NOTCH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.90655517578125	2	415.260728	828.506903	0.20093	8.3438E-05	-0.30147	-0.00012519	-0.10054	-4.175E-05	415.26060780730273	40.619	0.53878	40.719	40.479	41.018	0.099407					45	19	3	0	0	0	0.26527	1	8633	8633		28.487	3.0875	1	404730			52116	3766	29736	29737	63918	63918					0.08578990248429363
VGLLLTNSYKF	11	Unmodified	_VGLLLTNSYKF_					0	0	0		nc|ENSG00000185737|P56975-3|NRG3	nc|ENSG00000185737|P56975-3|NRG3	nc|ENSG00000185737|P56975-3|NRG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5905456542969	3	418.907934	1253.70197	-0.30271	-0.00012681	-0.2426	-0.00010163	-0.54531	-0.00022844	418.90820239458907	25.137	0.1335	25.105	25.021	25.154	-0.03141					8	4	2	0	0	0	0.33296	1	3971	3971		2.6312	0.54523	1	27594			52117	12880	29737	29738	63919	63919					0.08527116262735035
VGLLSAAPL	9	Unmodified	_VGLLSAAPL_					0	0	0			REV__ENST00000553077.5_1_16:68156243-68156372:+|nuORF	REV__ENST00000553077.5_1_16:68156243-68156372:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.7514343261719	2	420.763104	839.511654	0.040639	1.7099E-05	-0.19367	-8.149E-05	-0.15303	-6.439E-05	420.7630099637824	67.35	0.98148	67.428	66.82	67.802	0.078041					75	34	3	0	0	0	0.30166	1	16955	16955		8.5933	0	1	608600	+		52118	22222	29738	29739	63920	63920					0.08547874391160803
VGLNERPL	8	Unmodified	_VGLNERPL_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.8644104003906	2	449.261259	896.507966	0.13221	5.9399E-05	-0.18114	-8.1381E-05	-0.048929	-2.1982E-05	449.26111295105704	22.103	0.42037	22.002	21.888	22.308	-0.10034					24	15	2	0	0	0	0.34337	1	3130	3130		5.2307	0	1	49943	+		52119	18080	29739	29740	63921	63921					0.055572046173210765
VGLNVFLEK	9	Unmodified	_VGLNVFLEK_					0	0	0		ENST00000512790.5_1_5:112197073-112227301:+|nuORF;nc|ENSG00000153037|P09132-2|SRP19;ENSG00000153037|ENST00000505459|SRP19	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8003234863281	2	509.800217	1017.58588	0.41506	0.0002116	-0.87958	-0.00044841	-0.46452	-0.00023681	509.8000675724092	58.389	1.3939	58.389	57.768	59.162	0					117	48	4	0	0	0	8.0996E-05	2	14172	14124;14172		143.91	77.452	1	3596700			52120	5052	29740	29741	63922;63923	63923					0.07779217482709555
VGLNVFLEK	9	Unmodified	_VGLNVFLEK_					0	0	0		ENST00000512790.5_1_5:112197073-112227301:+|nuORF;nc|ENSG00000153037|P09132-2|SRP19;ENSG00000153037|ENST00000505459|SRP19	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8003845214844	2	509.800217	1017.58588	0.30943	0.00015775	-0.85502	-0.00043589	-0.5456	-0.00027814	509.8001391878856	58.228	1.5463	58.313	57.686	59.233	0.085621					135	55	4	0	0	0	8.0996E-05	2	14121	14081;14121		143.91	77.452	1	3602700			52121	5052	29740	29741	63924;63925	63925					0.07779217482709555
VGLNVFLEK	9	Unmodified	_VGLNVFLEK_					0	0	0		ENST00000512790.5_1_5:112197073-112227301:+|nuORF;nc|ENSG00000153037|P09132-2|SRP19;ENSG00000153037|ENST00000505459|SRP19	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	ENST00000512790.5_1_5:112197073-112227301:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8003234863281	2	509.800217	1017.58588	0.62124	0.00031671	-1.0227	-0.00052139	-0.40151	-0.00020469	509.7999282234243	58.422	1.2347	58.407	57.796	59.031	-0.014267					121	44	4	0	0	0	8.0996E-05	2	14176	14127;14176		143.91	77.452	1	3170100			52122	5052	29740	29741	63926;63927	63927					0.07779217482709555
VGLPHACL	8	Unmodified	_VGLPHACL_					0	0	0			REV__ENSG00000072858|ENST00000264852|SIDT1	REV__ENSG00000072858|ENST00000264852|SIDT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.88037109375	2	405.220549	808.426544	-0.1454	-5.8918E-05	-0.46097	-0.00018679	-0.60637	-0.00024571	405.2192151313384	24.446	0.15025	24.446	24.367	24.517	0					6	4	2	0	0	0	0.3439	1	3742	3742		2.8892	0	1	11917	+		52123	13768	29741	29742	63928	63928					0.014668056537288976
VGLREGQG	8	Unmodified	_VGLREGQG_					0	0	0			REV__nc|ENSG00000103197|P49815-7|TSC2	REV__nc|ENSG00000103197|P49815-7|TSC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.222900390625	2	408.222134	814.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.536	1	58.536	58.036	59.036	0								0	0	0	0.36961	1	14196	14196		5.7604	0	1		+		52124	14358	29742	29743	63929	63929					0.015077720321073684
VGLRSDKV	8	Unmodified	_VGLRSDKV_					0	0	0		ENST00000590384.1_1_17:76247421-76250413:-|nuORF	ENST00000590384.1_1_17:76247421-76250413:-|nuORF	ENST00000590384.1_1_17:76247421-76250413:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2608337402344	2	437.261259	872.507966	-0.17087	-7.4716E-05	-0.30646	-0.000134	-0.47733	-0.00020872	437.2610793461448	16.057	0.40001	16.057	15.867	16.267	0					21	13	2	0	0	0	0.45431	1	1233	1233		4.3292	2.0265	1	52971			52125	12168	29743	29744	63930	63930					0.0666120461733044
VGLTYYLKVLA	11	Unmodified	_VGLTYYLKVLA_					0	0	0			REV__ENST00000508722.5_1_5:34839321-34867279:+|nuORF	REV__ENST00000508722.5_1_5:34839321-34867279:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8695068359375	2	620.371007	1238.72746	0.36418	0.00022593	0.53859	0.00033413	0.90278	0.00056006	620.3715609404884	92.262	0.28947	92.262	92.219	92.509	0.00046539					27	22	2	0	0	0	0.32996	1	24514	24514		8.1555	0	1	105160	+		52126	19003	29744	29745	63931	63931					0.1176459078519656
VGLVHTLIFIT	11	Unmodified	_VGLVHTLIFIT_					0	0	0			REV__ENSG00000127603|ENST00000564288|MACF1	REV__ENSG00000127603|ENST00000564288|MACF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8724975585938	2	606.871174	1211.72779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.37	1	117.39	116.89	117.89	0.023476								0	0	0	0.38203	1	30424	30424		0.30703	0	1		+		52127	15347	29745	29746	63932	63932					0.13040010505051214
VGLVHTLIFIT	11	Unmodified	_VGLVHTLIFIT_					0	0	0			REV__ENSG00000127603|ENST00000564288|MACF1	REV__ENSG00000127603|ENST00000564288|MACF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8722534179688	2	606.871174	1211.72779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.83	1	118.85	118.35	119.35	0.026253								0	0	0	0.38203	1	30758	30758		0.30703	0	1		+		52128	15347	29745	29746	63933	63933					0.13040010505051214
VGLVLQEL	8	Unmodified	_VGLVLQEL_					0	0	0		ENSG00000181523|ENST00000326317|SGSH;ENST00000575282.5_1_17:78185753-78186503:-|nuORF;ENST00000570923.1_1_17:78185753-78194107:-|nuORF	ENSG00000181523|ENST00000326317|SGSH	ENSG00000181523|ENST00000326317|SGSH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2512512207031	2	435.768386	869.522219	0.054932	2.3938E-05	-0.66821	-0.00029118	-0.61328	-0.00026725	435.76812754958763	71.993	0.73178	71.966	71.602	72.334	-0.027275					41	26	2	0	0	0	0.30241	1	18313	18313		32.305	0	1	222030			52129	7238	29746	29747	63934	63934					0.08223857045607019
VGLYWIQIIL	10	Unmodified	_VGLYWIQIIL_					0	0	0		ENST00000342374.4_1_20:43129912-43132561:-|nuORF	ENST00000342374.4_1_20:43129912-43132561:-|nuORF	ENST00000342374.4_1_20:43129912-43132561:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.8961181640625	3	406.58127	1216.72198	0.40726	0.00016558	3.7572	0.0015276	4.1645	0.0016932	406.9165898730376	36.389	0.45763	36.475	36.3	36.757	0.08625					25	15	3	0	0	0	0.32033	1	7450	7450		2.086	0	1	70088			52130	9530	29747	29748	63935	63935					0.1222891199336118
VGMLVLNK	8	Unmodified	_VGMLVLNK_					0	0	0			REV__ENSG00000182179|ENST00000333486|UBA7	REV__ENSG00000182179|ENST00000333486|UBA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.89471435546875	2	437.264956	872.515359	0.070615	3.0878E-05	1.0964	0.00047941	1.167	0.00051029	437.26528197460317	19.822	0.52255	19.706	19.488	20.01	-0.11592					25	17	2	0	0	0	0.34337	1	2373	2373		5.2307	2.3415	1	25214	+		52131	18181	29748	29749	63936	63936					0.07400220893384812
VGMVPLNL	8	Unmodified	_VGMVPLNL_					0	0	0			REV__DENND6B|p.A244*|1|0.13|ENSG00000205593|chr22:50315741-50315742|GC/-|frameshift_variant	REV__DENND6B|p.A244*|1|0.13|ENSG00000205593|chr22:50315741-50315742|GC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.75128173828125	2	421.743857	841.47316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.402	1	66.402	65.902	66.902	0								0	0	0	0.36169	1	16618	16618		9.3474	0	1		+		52132	13295	29749	29750	63937	63937					0.04608245485007956
VGMVPLNL	8	Unmodified	_VGMVPLNL_					0	0	0			REV__DENND6B|p.A244*|1|0.13|ENSG00000205593|chr22:50315741-50315742|GC/-|frameshift_variant	REV__DENND6B|p.A244*|1|0.13|ENSG00000205593|chr22:50315741-50315742|GC/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.7511901855469	2	421.743857	841.47316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.678	1	66.762	66.262	67.262	0.083832								0	0	0	0.33625	1	16695	16695		20.871	1.4322	1		+		52133	13295	29749	29750	63938	63938					0.04608245485007956
VGNDGGTVL	9	Unmodified	_VGNDGGTVL_					0	0	0			REV__nc|ENSG00000172915|Q8NFP9|NBEA	REV__nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.52044677734375	2	416.213975	830.413397	0.31461	0.00013094	4.0827	0.0016993	4.3974	0.0018302	416.215411588839	49.814	0.36488	49.858	49.695	50.06	0.044891					15	13	2	0	0	0	0.22596	1	11535	11535		15.847	5.6638	1	94675	+		52134	17746	29750	29751	63939	63939					-0.008593539246589899
VGNLFATL	8	Unmodified	_VGNLFATL_					0	0	0			REV__ENSG00000169006|ENST00000306928|NTSR2	REV__ENSG00000169006|ENST00000306928|NTSR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.92230224609375	2	417.739628	833.464704	-0.37762	-0.00015775	0.54625	0.00022819	0.16863	7.0443E-05	417.73972846993183	39.46	0.53696	39.46	39.294	39.831	0					30	19	2	0	0	0	0.34131	1	8370	8370		12.532	0	1	232660	+		52135	17493	29751	29752	63940	63940					0.04131014840049829
VGNLKAHL	8	Unmodified	_VGNLKAHL_					0	0	0		ENST00000472658.1_1_1:16270204-16270420:-|nuORF;ENST00000487785.1_1_1:16270204-16270866:-|nuORF;nc|ENSG00000116809|Q13105-3|ZBTB17;ENSG00000116809|ENST00000375743|ZBTB17;nc|ENSG00000116809|Q13105-2|ZBTB17	ENST00000472658.1_1_1:16270204-16270420:-|nuORF	ENST00000472658.1_1_1:16270204-16270420:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.7747802734375	2	426.25852	850.502486	0.039622	1.6889E-05	0.28352	0.00012085	0.32315	0.00013774	426.2586056766508	34.068	0.60934	34.135	33.904	34.513	0.06636					40	21	2	0	0	0	0.34185	1	6769	6769		5.7604	0	1	196290			52136	2753	29752	29753	63941	63941					0.07125525825506429
VGNPLVKR	8	Unmodified	_VGNPLVKR_					0	0	0		ENST00000435989.6_1_19:58385349-58385952:-|nuORF	ENST00000435989.6_1_19:58385349-58385952:-|nuORF	ENST00000435989.6_1_19:58385349-58385952:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.57403564453125	2	441.779619	881.544686	-0.12756	-5.6351E-05	0.75856	0.00033512	0.631	0.00027876	441.7800180382029	14.786	0.27709	14.786	14.623	14.9	0					15	9	2	0	0	0	0.344	1	820	820		2.5775	0.27475	1	17014			52137	10515	29753	29754	63942	63942					0.09917501233894654
VGNRHGLLV	9	Unmodified	_VGNRHGLLV_					0	0	0		ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7879943847656	2	482.787976	963.561398	-0.047368	-2.2869E-05	0.70937	0.00034248	0.662	0.00031961	482.78792071832515	27.622	0.82697	27.622	27.354	28.181	0					72	28	4	0	0	0	0.10197	1	4707	4707		37.974	19.839	1	671220			52138	8545	29754	29755	63943	63943					0.07816002119841414
VGNRHGLLV	9	Unmodified	_VGNRHGLLV_					0	0	0		ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7879638671875	2	482.787976	963.561398	-0.063127	-3.0477E-05	0.73109	0.00035296	0.66796	0.00032248	482.78792613146214	27.62	0.99539	27.598	27.321	28.316	-0.021412					80	34	4	0	0	0	0.062246	2	4704	4704;4754		48.346	22.005	1	630310			52139	8545	29754	29755	63944;63945	63944					0.07816002119841414
VGNRHGLLV	9	Unmodified	_VGNRHGLLV_					0	0	0		ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7879943847656	2	482.787976	963.561398	-0.063327	-3.0573E-05	0.74544	0.00035989	0.68211	0.00032931	482.78788351938385	27.645	0.74749	27.634	27.344	28.092	-0.01156					69	25	4	0	0	0	0.088391	2	4695	4695;4745		39.957	23.015	1	647180			52140	8545	29754	29755	63946;63947	63946					0.07816002119841414
VGNSAMSR	8	Unmodified	_VGNSAMSR_					0	0	0			REV__ENST00000515408.5_1_5:112351033-112351294:+|nuORF	REV__ENST00000515408.5_1_5:112351033-112351294:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.1994934082031	2	411.200344	820.386136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.212	1	59.303	58.803	59.803	0.091301								0	0	0	0.37078	1	14398	14398		5.2307	0.90143	1		+		52141	21842	29755	29756	63948	63948					-0.03124160736695103
VGNSAMSR	8	Unmodified	_VGNSAMSR_					0	0	0			REV__ENST00000515408.5_1_5:112351033-112351294:+|nuORF	REV__ENST00000515408.5_1_5:112351033-112351294:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2011413574219	2	411.200344	820.386136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.638	1	83.715	83.215	84.215	0.077095								0	0	0	0.37277	1	21881	21881		4.3292	0.73274	1		+		52142	21842	29755	29756	63949	63949					-0.03124160736695103
VGNSAMSR	8	Unmodified	_VGNSAMSR_					0	0	0			REV__ENST00000515408.5_1_5:112351033-112351294:+|nuORF	REV__ENST00000515408.5_1_5:112351033-112351294:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2020568847656	2	411.200344	820.386136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.056	1	84.133	83.633	84.633	0.077095								0	0	0	0.37277	1	22011	22011		4.3292	0.73274	1		+		52143	21842	29755	29756	63950	63950					-0.03124160736695103
VGNSAQKE	8	Unmodified	_VGNSAQKE_					0	0	0			REV__ENSG00000166825|ENST00000300060|ANPEP	REV__ENSG00000166825|ENST00000300060|ANPEP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.220458984375	2	416.711599	831.408646	-0.25386	-0.00010579	-1.4688	-0.00061208	-1.7227	-0.00071787	416.71126497709275	15.711	0.25821	15.711	15.557	15.816	0					11	8	2	0	0	0	0.34408	1	1123	1123		2.3027	0.24298	1	18084	+		52144	17343	29756	29757	63951	63951					-0.01380238067429218
VGNSAQKE	8	Unmodified	_VGNSAQKE_					0	0	0			REV__ENSG00000166825|ENST00000300060|ANPEP	REV__ENSG00000166825|ENST00000300060|ANPEP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	416.711599	831.408646	0.0016129	6.7212E-07	-3.6404	-0.001517	-3.6388	-0.0015163	416.7112597260107	15.835	0.17599	15.725	15.61	15.786	-0.10981	0.0071388	-0.0016601	NaN	2.3027	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16188	+		52145	17343	29756	29757							-0.01380238067429218
VGPASHDK	8	Unmodified	_VGPASHDK_					0	0	0			REV__ENSG00000159337|ENST00000290472|PLA2G4D	REV__ENSG00000159337|ENST00000290472|PLA2G4D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.23834228515625	2	405.70886	809.403166	0.089026	3.6118E-05	3.4046	0.0013813	3.4936	0.0014174	405.7099428750439	21.361	0.23215	21.26	21.16	21.392	-0.10034					10	7	2	0	0	0	0.34319	1	2831	2831		5.7604	0	1	26981	+		52146	16846	29757	29758	63952	63952					-0.00915916859241861
VGPELVLSV	9	Unmodified	_VGPELVLSV_					0	0	0			REV__ENST00000588598.5_1_19:1881968-1882184:-|nuORF	REV__ENST00000588598.5_1_19:1881968-1882184:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7738342285156	2	456.773668	911.532783	0.060926	2.7829E-05	-0.67984	-0.00031053	-0.61892	-0.00028271	456.7737135511081	69.994	0.67366	69.994	69.732	70.406	0					56	24	4	0	0	0	0.14076	1	17741	17741		32.305	0	1	673880	+		52147	22546	29758	29759	63953	63953					0.07347839700059922
VGPELVLSV	9	Unmodified	_VGPELVLSV_					0	0	0			REV__ENST00000588598.5_1_19:1881968-1882184:-|nuORF	REV__ENST00000588598.5_1_19:1881968-1882184:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.77374267578125	2	456.773668	911.532783	0.055845	2.5509E-05	-1.7773	-0.00081184	-1.7215	-0.00078633	456.77367455075574	69.889	0.86655	69.955	69.518	70.384	0.066048					91	30	4	0	0	0	0.068501	1	17682	17682		46.021	0	1	607980	+		52148	22546	29758	29759	63954	63954					0.07347839700059922
VGPELVLSV	9	Unmodified	_VGPELVLSV_					0	0	0			REV__ENST00000588598.5_1_19:1881968-1882184:-|nuORF	REV__ENST00000588598.5_1_19:1881968-1882184:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7735900878906	2	456.773668	911.532783	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.964	1	69.942	69.442	70.442	-0.022087								0	0	0	0.13597	1	17695	17695		37.974	0	1		+		52149	22546	29758	29759	63955	63955					0.07347839700059922
VGPFGDIL	8	Unmodified	_VGPFGDIL_					0	0	0			REV__nc|ENSG00000177182|Q8IUQ0-2|CLVS1	REV__nc|ENSG00000177182|Q8IUQ0-2|CLVS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5606994628906	2	409.226354	816.438155	0.55602	0.00022754	-4.4829	-0.0018345	-3.9269	-0.001607	409.2256425700618	60.597	0.17244	60.694	60.579	60.752	0.096989					8	5	2	0	0	0	0.34185	1	14806	14806		10.183	2.2732	1	81624	+		52150	17978	29759	29760	63956	63956					0.022593259487166506
VGPGAGRVP	9	Unmodified	_VGPGAGRVP_					0	0	0			REV__ENST00000583454.1_1_17:73512940-73513526:+|nuORF	REV__ENST00000583454.1_1_17:73512940-73513526:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.9067077636719	2	405.235045	808.455536	-0.26822	-0.00010869	0.59059	0.00023933	0.32237	0.00013064	405.23514319019375	15.922	0.5612	15.922	15.734	16.295	0					35	19	2	0	0	0	0.24913	1	1239	1239		12.532	0.89125	1	73554	+		52151	22498	29760	29761	63957	63957					0.04364666274364026
VGPGTRGSV	9	Unmodified	_VGPGTRGSV_					0	0	0		ENST00000599939.1_1_19:7991716-7991851:-|nuORF	ENST00000599939.1_1_19:7991716-7991851:-|nuORF	ENST00000599939.1_1_19:7991716-7991851:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.5505676269531	2	415.229959	828.445365	0.15286	6.347E-05	0.27539	0.00011435	0.42825	0.00017782	415.230053176285	19.315	0.77359	19.199	18.838	19.612	-0.11592					49	26	2	0	0	0	0.20167	1	2210	2210		22.736	0	1	177630			52152	12245	29761	29762	63958	63958					0.024280585491396778
VGPGTRGSV	9	Unmodified	_VGPGTRGSV_					0	0	0		ENST00000599939.1_1_19:7991716-7991851:-|nuORF	ENST00000599939.1_1_19:7991716-7991851:-|nuORF	ENST00000599939.1_1_19:7991716-7991851:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.5506591796875	2	415.229959	828.445365	0.10964	4.5524E-05	0.12178	5.0565E-05	0.23141	9.609E-05	415.2300904340485	19.248	1.0867	19.193	18.791	19.877	-0.055693					68	37	3	0	0	0	0.24993	1	2185	2185		13.042	2.2185	1	206890			52153	12245	29761	29762	63959	63959					0.024280585491396778
VGPHLLSL	8	Unmodified	_VGPHLLSL_					0	0	0			REV__ENSG00000119138|ENST00000377126|KLF9	REV__ENSG00000119138|ENST00000377126|KLF9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.1874694824219	2	418.255446	834.496338	0.21271	8.8968E-05	-0.053061	-2.2193E-05	0.15965	6.6775E-05	418.25530904541165	53.993	0.57152	53.993	53.834	54.405	0					25	20	2	0	0	0	0.29134	1	12770	12770		19.439	0	1	234450	+		52154	15029	29762	29763	63960	63960					0.07247007594003207
VGPHLLSL	8	Unmodified	_VGPHLLSL_					0	0	0			REV__ENSG00000119138|ENST00000377126|KLF9	REV__ENSG00000119138|ENST00000377126|KLF9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.187744140625	2	418.255446	834.496338	0.28986	0.00012123	-0.45293	-0.00018944	-0.16308	-6.8208E-05	418.2552562522863	54.121	0.39083	54.105	53.919	54.31	-0.015923					18	13	2	0	0	0	0.29134	1	12795	12795		34.187	0	1	183180	+		52155	15029	29762	29763	63961	63961					0.07247007594003207
VGPHLLSL	8	Unmodified	_VGPHLLSL_					0	0	0			REV__ENSG00000119138|ENST00000377126|KLF9	REV__ENSG00000119138|ENST00000377126|KLF9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	418.255446	834.496338	0.21827	9.1292E-05	-0.31443	-0.00013151	-0.096165	-4.0222E-05	418.25527391819037	53.95	0.50143	54.006	53.845	54.346	0.056255	-0.028707	4.1093E-05	NaN	19.439	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192470	+		52156	15029	29762	29763							0.07247007594003207
VGPIFPPIHLA	11	Unmodified	_VGPIFPPIHLA_					0	0	0			REV__ENSG00000106341|ENST00000342032|PPP1R17	REV__ENSG00000106341|ENST00000342032|PPP1R17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8455200195312	2	580.844959	1159.67537	0.35905	0.00020855	0.60293	0.00035021	0.96198	0.00055876	580.8453070884026	87.274	0.63342	87.361	87.065	87.698	0.08709					80	28	4	0	0	0	0.43437	1	23052	23052		6.7232	0	1	527510	+		52157	14516	29763	29764	63962	63962					0.10191472162091486
VGPLHGSLGK	10	Unmodified	_VGPLHGSLGK_					0	0	0			REV__nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	REV__nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7823791503906	2	482.782359	963.550165	0.14258	6.8834E-05	0.21686	0.00010469	0.35943	0.00017353	482.7823895866176	26.911	0.47743	26.911	26.729	27.207	0					26	16	2	0	0	0	0.12843	1	4495	4495		41.84	4.765	1	109250	+		52158	17271	29764	29765	63963	63963					0.06693180025706624
VGPLHGSLGK	10	Unmodified	_VGPLHGSLGK_					0	0	0			REV__nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	REV__nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	482.782359	963.550165	0.14258	6.8834E-05	0.21686	0.00010469	0.35943	0.00017353	482.7823895866176	26.911	0.47743	26.911	26.729	27.207	0	-0.0078285	0.00017157	NaN	41.84	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109250	+		52159	17271	29764	29765							0.06693180025706624
VGPLHGSLGK	10	Unmodified	_VGPLHGSLGK_					0	0	0			REV__nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	REV__nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	482.782359	963.550165	0.31765	0.00015336	-0.22438	-0.00010833	0.093272	4.503E-05	482.7820720221762	26.955	0.60351	26.943	26.741	27.344	-0.01156	0.024222	-0.00025448	NaN	41.84	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142690	+		52160	17271	29764	29765							0.06693180025706624
VGPLHSSL	8	Unmodified	_VGPLHSSL_					0	0	0		ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.908203125	2	405.229428	808.444303	-0.3517	-0.00014252	1.3985	0.0005667	1.0468	0.00042418	405.22982858775106	30.417	0.35723	30.444	30.281	30.638	0.027157					16	12	2	0	0	0	0.34046	1	5610	5610		14.582	0	1	67961			52161	4811	29765	29766	63964	63964					0.03241844180240605
VGPLRKGR	8	Unmodified	_VGPLRKGR_					0	0	0			REV__ENSG00000127804|ENST00000263092|METTL16	REV__ENSG00000127804|ENST00000263092|METTL16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7488098144531	2	441.785236	881.555919	-0.18899	-8.3493E-05	0.38265	0.00016905	0.19366	8.5557E-05	441.7853519114401	13.605	0.35834	13.537	13.388	13.746	-0.067496					18	12	2	0	0	0	0.34408	1	460	460		2.3027	0	1	46039	+		52162	15350	29766	29767	63965	63965					0.11040323328040813
VGPPAARAA	9	Unmodified	_VGPPAARAA_					0	0	0		ENSG00000008300|ENST00000164024|CELSR3;nc|ENSG00000008300|Q9NYQ7-2|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	ENSG00000008300|ENST00000164024|CELSR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.90667724609375	2	405.235045	808.455536	-0.32298	-0.00013088	0.59228	0.00024001	0.2693	0.00010913	405.2351171143669	16.045	0.5853	15.931	15.718	16.304	-0.11434					29	19	2	0	0	0	0.25066	1	1274	1274		11.64	0	1	84894			52163	393	29767	29768	63966	63966					0.04364666274364026
VGPPFKRYY	9	Unmodified	_VGPPFKRYY_					0	0	0			REV__ENSG00000173769|ENST00000309765|TOPAZ1	REV__ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8200073242188	2	563.805834	1125.59712	0.20813	0.00011735	-2.5318	-0.0014274	-2.3237	-0.0013101	563.8046905316379	27.022	0.36542	27.022	26.841	27.207	0					19	12	2	0	0	0	0.30623	1	4501	4501		7.9102	2.6133	1	56799	+		52164	17801	29768	29769	63967	63967					0.03934039576847681
VGPPVTLGR	9	Unmodified	_VGPPVTLGR_					0	0	0		ENST00000375897.7_1_10:27529730-27529778:-|nuORF	ENST00000375897.7_1_10:27529730-27529778:-|nuORF	ENST00000375897.7_1_10:27529730-27529778:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.27154541015625	2	448.271627	894.528701	-0.023937	-1.073E-05	-0.35057	-0.00015715	-0.37451	-0.00016788	448.27146096521363	35.484	0.69198	35.57	35.317	36.009	0.08625					38	24	3	0	0	0	0.24311	1	7113	7113		7.2892	0	1	451220			52165	9916	29769	29770	63968	63968					0.07721794997007692
VGPRPLGR	8	Unmodified	_VGPRPLGR_					0	0	0		ENST00000415717.5_1_2:219602521-219602662:+|nuORF	ENST00000415717.5_1_2:219602521-219602662:+|nuORF	ENST00000415717.5_1_2:219602521-219602662:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.2567443847656	2	426.264136	850.51372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.107	1	42.198	41.698	42.698	0.091362								0	0	0	0.35251	1	9130	9130		13.508	0	1				52166	10314	29770	29771	63969	63969					0.08248347919652588
VGPRTSTL	8	Unmodified	_VGPRTSTL_					0	0	0		ENST00000518816.5_1_8:21924386-21926775:+|nuORF	ENST00000518816.5_1_8:21924386-21926775:+|nuORF	ENST00000518816.5_1_8:21924386-21926775:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.7399597167969	2	415.74016	829.465767	0.24382	0.00010137	-0.69065	-0.00028713	-0.44682	-0.00018576	415.7395897716039	21.371	0.99113	21.322	20.89	21.881	-0.049377					81	34	4	0	0	0	0.27124	1	2872	2872		34.102	3.4659	1	366240			52167	11449	29771	29772	63970	63970					0.044212292089468974
VGPRTSTL	8	Unmodified	_VGPRTSTL_					0	0	0		ENST00000518816.5_1_8:21924386-21926775:+|nuORF	ENST00000518816.5_1_8:21924386-21926775:+|nuORF	ENST00000518816.5_1_8:21924386-21926775:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	415.74016	829.465767	0.3966	0.00016488	-1.7847	-0.00074199	-1.3881	-0.0005771	415.73955290009815	21.456	0.84259	21.356	21.101	21.943	-0.10034	0.026682	-0.00030776	NaN	34.102	61	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352250			52168	11449	29771	29772							0.044212292089468974
VGPSVAPPK	9	Unmodified	_VGPSVAPPK_					0	0	0			REV__nc|ENSG00000055208|Q9NYJ8-2|TAB2	REV__nc|ENSG00000055208|Q9NYJ8-2|TAB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.860595703125	2	426.252903	850.491253	-0.12073	-5.1461E-05	-0.23489	-0.00010012	-0.35561	-0.00015158	426.2527528423671	24.467	0.51069	24.467	24.162	24.673	0					21	16	2	0	0	0	0.25526	1	3783	3783		1.8442	0	1	34561	+		52169	13591	29772	29773	63971	63971					0.06002703731371639
VGPTGGGKTT	10	Unmodified	_VGPTGGGKTT_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;DNAH6|p.R2893Pfs*33|1|0.06|ENSG00000115423|chr2:84705697-84705698|-/CTTATCATATTCTAAAA|frameshift_variant;nc|ENSG00000115423|Q9C0G6-4|DNAH6;nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.5870361328125	2	437.735074	873.455596	-0.049316	-2.1587E-05	0.17094	7.4826E-05	0.12162	5.3239E-05	437.73507763570956	16.313	0.31608	16.25	16.066	16.382	-0.062532					16	10	3	0	0	0	0.32132	1	1287	1287		1.4819	0	1	26008			52170	12881;7561;2646	29773	29774	63972	63972					0.01380621483701816
VGQAAIRGL	9	Unmodified	_VGQAAIRGL_					0	0	0		ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL	ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.5690612792969	2	442.769252	883.52395	0.18892	8.3647E-05	0.29982	0.00013275	0.48873	0.0002164	442.769211693883	16.549	0.35175	16.487	16.266	16.617	-0.062532					15	11	2	0	0	0	0.25879	1	1326	1326		4.756	0	1	19779			52171	573	29774	29775	63973	63973					0.07752910854230777
VGQLGKPL	8	Unmodified	_VGQLGKPL_					0	0	0			REV__ENST00000590830.5_1_19:1578341-1584901:-|nuORF	REV__ENST00000590830.5_1_19:1578341-1584901:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.8962097167969	2	406.255446	810.496338	0.041827	1.6992E-05	-0.30167	-0.00012255	-0.25984	-0.00010556	406.25523771119936	36.714	0.24557	36.801	36.734	36.98	0.08741					11	8	2	0	0	0	0.34319	1	7485	7485		5.7604	0	1	47016	+		52172	22558	29775	29776	63974	63974					0.08351007593978466
VGQLQARL	8	Unmodified	_VGQLQARL_					0	0	0			REV__ENSG00000167548|ENST00000301067|KMT2D	REV__ENSG00000167548|ENST00000301067|KMT2D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.56890869140625	2	442.769252	883.52395	0.053499	2.3688E-05	-0.034832	-1.5422E-05	0.018667	8.2652E-06	442.76901894200756	16.148	0.31474	16.148	15.981	16.295	0					13	10	2	0	0	0	0.344	1	1257	1257		2.5775	0	1	15210	+		52173	17391	29776	29777	63975	63975					0.0775291085420804
VGQMRVKSNVK	11	Unmodified	_VGQMRVKSNVK_					0	0	0		ENST00000378308.6_2_X:41003853-41007670:+|nuORF	ENST00000378308.6_2_X:41003853-41007670:+|nuORF	ENST00000378308.6_2_X:41003853-41007670:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.90777587890625	3	415.908052	1244.70233	0.49492	0.00020584	-0.1976	-8.2182E-05	0.29732	0.00012366	415.9079258741227	33.51	1.8274	33.576	32.489	34.317	0.06636					173	65	3	0	0	0	0.40332	1	6455	6455		5.8681	0.084707	1	1278500			52174	9957	29777	29778	63976	63976					0.0897621271094522
VGQQLASL	8	Unmodified	_VGQQLASL_					0	0	0			REV__ENST00000251472.8_1_19:12977554-12978292:+|nuORF	REV__ENST00000251472.8_1_19:12977554-12978292:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.5595703125	2	408.23471	814.454868	-0.26786	-0.00010935	0.40775	0.00016646	0.13989	5.7108E-05	408.23476889239305	23.322	0.69245	23.322	23.077	23.769	0					47	23	3	0	0	0	0.34337	1	3537	3537		5.2307	0	1	379940	+		52175	19525	29778	29779	63977	63977					0.04021826834662079
VGQQLASL	8	Unmodified	_VGQQLASL_					0	0	0			REV__ENST00000251472.8_1_19:12977554-12978292:+|nuORF	REV__ENST00000251472.8_1_19:12977554-12978292:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	408.23471	814.454868	-0.12411	-5.0667E-05	0.39542	0.00016143	0.27131	0.00011076	408.2347164368979	23.378	0.7915	23.29	23.046	23.837	-0.08761	-0.033093	1.9082E-05	NaN	5.2307	41	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417700	+		52176	19525	29778	29779							0.04021826834662079
VGQQLASL	8	Unmodified	_VGQQLASL_					0	0	0			REV__ENST00000251472.8_1_19:12977554-12978292:+|nuORF	REV__ENST00000251472.8_1_19:12977554-12978292:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	408.23471	814.454868	0.032442	1.3244E-05	0.28553	0.00011656	0.31797	0.00012981	408.2346542143969	23.402	0.76252	23.358	23.109	23.872	-0.044867	0.03414	-7.0645E-05	NaN	5.2307	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415040	+		52177	19525	29778	29779							0.04021826834662079
VGQREQTRDAL	11	Unmodified	_VGQREQTRDAL_					0	0	0		TMEM253|p.A212D|1|0.12|ENSG00000232070|chr14:21103239-21103239|C/A|missense_variant	TMEM253|p.A212D|1|0.12|ENSG00000232070|chr14:21103239-21103239|C/A|missense_variant	TMEM253|p.A212D|1|0.12|ENSG00000232070|chr14:21103239-21103239|C/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8934326171875	3	424.893347	1271.65821	-0.24829	-0.0001055	0.18186	7.7271E-05	-0.066433	-2.8227E-05	424.893426376151	19.312	0.8988	19.312	18.923	19.822	0					73	31	3	0	0	0	0.39234	1	2267	2267		6.6235	0.43161	1	429810			52178	23399	29779	29780	63978	63978					0.03324899818335325
VGQRLSDHPDV	11	Unmodified	_VGQRLSDHPDV_					0	0	0		nc|ENSG00000144908|O75891-2|ALDH1L1;ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1;ENST00000393431.6_1_3:125831719-125854422:-|nuORF	nc|ENSG00000144908|O75891-2|ALDH1L1	nc|ENSG00000144908|O75891-2|ALDH1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.2109069824219	3	408.210676	1221.6102	0.061747	2.5206E-05	0.12664	5.1695E-05	0.18838	7.6901E-05	408.2107495088683	17.301	0.84875	17.24	16.887	17.736	-0.060429					71	29	3	0	0	0	0.46392	1	1622	1622		2.8433	0.56051	1	356170			52179	4622	29780	29781	63979	63979					0.008258258982550615
VGQRWRQVQW	10	Unmodified	_VGQRWRQVQW_					0	0	0		ENST00000461007.6_1_X:155252382-155252984:+|nuORF	ENST00000461007.6_1_X:155252382-155252984:+|nuORF	ENST00000461007.6_1_X:155252382-155252984:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.561279296875	3	448.242422	1341.70544	0.13211	5.9216E-05	0.81648	0.00036598	0.94859	0.0004252	448.24298601714065	18.025	0.46667	18.025	17.802	18.269	0					21	15	2	0	0	0	0.32165	1	1747	1747		0.69767	0.19171	1	34091			52180	10739	29781	29782	63980	63980					0.04825223879970508
VGQVELLL	8	Unmodified	_VGQVELLL_					0	0	0			REV__ENST00000464060.5_1_3:65438903-66023983:-|nuORF	REV__ENST00000464060.5_1_3:65438903-66023983:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.7684631347656	2	435.768386	869.522219	-0.21861	-9.5263E-05	-0.31663	-0.00013798	-0.53524	-0.00023324	435.7681377756292	66.955	0.57924	66.941	66.634	67.213	-0.013588					52	20	3	0	0	0	0.33441	1	16731	16731		26.884	0	1	1166800	+		52181	16532	29782	29783	63981	63981					0.08223857045629757
VGRAFARA	8	Unmodified	_VGRAFARA_					0	0	0		nc|ENSG00000262246|P57737-3|CORO7;ENSG00000217930|ENST00000318059|PAM16;ENST00000573236.5_1_16:4390322-4393442:-|nuORF;ENST00000575636.5_1_16:4391662-4400938:-|nuORF;ENST00000573614.5_1_16:4391662-4401262:-|nuORF;ENST00000571819.1_1_16:4391662-4393546:-|nuORF	nc|ENSG00000262246|P57737-3|CORO7	nc|ENSG00000262246|P57737-3|CORO7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.0814514160156	2	424.248486	846.48242	-0.40531	-0.00017195	-1.5069	-0.00063928	-1.9122	-0.00081124	424.247692210095	25.004	0.46827	24.972	24.796	25.265	-0.031408					23	15	2	0	0	0	0.34337	1	3871	3871		5.2307	2.3415	1	48417			52182	12987	29783	29784	63982	63982					0.05303774885544499
VGREAVVL	8	Unmodified	_VGREAVVL_					0	0	0		ENST00000333602.10_1_3:195635568-195635940:-|nuORF	ENST00000333602.10_1_3:195635568-195635940:-|nuORF	ENST00000333602.10_1_3:195635568-195635940:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.26824951171875	2	421.758352	841.502152	0.38619	0.00016288	-0.3151	-0.0001329	0.071085	2.9981E-05	421.7581346031824	36.864	0.61458	36.957	36.661	37.275	0.093018					41	22	3	0	0	0	0.31934	1	7564	7564		24.674	0	1	415550			52183	9460	29784	29785	63983	63983					0.07506106105654453
VGREGGFRLQF	11	Unmodified	_VGREGGFRLQF_					0	0	0		ENST00000397261.7_1_3:9848328-9848454:+|nuORF	ENST00000397261.7_1_3:9848328-9848454:+|nuORF	ENST00000397261.7_1_3:9848328-9848454:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.8948059082031	3	422.563161	1264.66765	-0.39541	-0.00016709	0.12615	5.3305E-05	-0.26927	-0.00011378	422.56306679170325	12.686	0.44776	12.686	12.555	13.003	0					20	15	2	0	0	0	0.33105	1	268	268		3.3557	1.7634	1	26115			52184	10134	29785	29786	63984	63984					0.045907128945145814
VGREKVSK	8	Unmodified	_VGREKVSK_					0	0	0			REV__ENSG00000163781|ENST00000260810|TOPBP1	REV__ENSG00000163781|ENST00000260810|TOPBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2347106933594	2	451.774534	901.534515	-0.036048	-1.6286E-05	-1.047	-0.00047301	-1.0831	-0.0004893	451.7740982132467	15.625	0.32798	15.516	15.312	15.64	-0.10982					17	10	2	0	0	0	0.34367	1	1059	1059		4.3292	0	1	34821	+		52185	17087	29786	29787	63985	63985					0.07980893508658937
VGRFGGRG	8	Unmodified	_VGRFGGRG_					0	0	0		nc|ENSG00000110171|O75382-4|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3;nc|ENSG00000110171|O75382-3|TRIM3;ENST00000530724.1_1_11:6471537-6472266:-|nuORF	nc|ENSG00000110171|O75382-4|TRIM3	nc|ENSG00000110171|O75382-4|TRIM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.1724853515625	2	403.225011	804.435469	-0.49772	-0.00020069	-3.6554	-0.001474	-4.1532	-0.0016747	403.22286985918936	18.589	0.14171	18.531	18.458	18.6	-0.058174					7	4	2	0	0	0	0.34319	1	1970	1970		5.7604	3.1829	1	14321			52186	2299	29787	29788	63986	63986					0.02542915334436202
VGRFKSHKER	10	Unmodified	_VGRFKSHKER_					0	0	0		ENSG00000186288|ENST00000373519|PABPC1L2A;ENSG00000184388|ENST00000373521|PABPC1L2B	ENSG00000186288|ENST00000373519|PABPC1L2A	ENSG00000186288|ENST00000373519|PABPC1L2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.7340393066406	3	415.238789	1242.69454	-0.68998	-0.00028651	-3.4161	-0.0014185	-4.1061	-0.001705	415.23731992236264	35.063	0.52049	35.138	34.933	35.454	0.075306					38	18	3	0	0	0	0.31651	1	6967	6967		7.9454	0	1	181850			52187	7451	29788	29789	63987	63987					0.08289821505695727
VGRGGGGA	8	Unmodified	_VGRGGGGA_					0	0	0		nc|nan|Q9H3H3|C11orf68;ENSG00000175573|ENST00000438576|C11orf68	REV__ENST00000356016.7_1_10:98592747-98593206:+|nuORF	REV__ENST00000356016.7_1_10:98592747-98593206:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8602294921875	1	630.331799	629.324522	0.61004	0.00038453	-0.20208	-0.00012738	0.40795	0.00025715	630.3328264700992	83.276	0.6662	83.276	82.813	83.479	0					36	25	2	0	0	0	0.34445	1	21728	21728		0	0	1	139180			52188	20196	29789	29790	63988	63988					-0.004967243736814453
VGRGGGGG	8	Unmodified	_VGRGGGGG_					0	0	0			REV__ENST00000323061.5_1_4:89618468-89618519:-|nuORF	REV__ENST00000323061.5_1_4:89618468-89618519:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	615.8387451171875	1	616.316148	615.308872	0.39057	0.00024071	-3.5626	-0.0021957	-3.172	-0.001955	616.3099197683514	53.636	0.10512	53.636	53.568	53.674	0					5	3	2	0	0	0	0.34437	1	12663	12663		0.69038	0	1	61249	+		52189	19980	29790	29791	63989	63989					-0.014170108907137546
VGRGSPPR	8	Unmodified	_VGRGSPPR_					0	0	0			REV__ENST00000423701.6_1_3:42610473-42623377:-|nuORF	REV__ENST00000423701.6_1_3:42610473-42623377:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2381286621094	2	413.238119	824.461684	0.15901	6.5707E-05	-0.014559	-6.0164E-06	0.14445	5.9691E-05	413.2381052916761	66.464	1.5716	66.45	65.824	67.396	-0.013588					96	55	3	0	0	0	0.45431	1	16540	16540		4.3292	0	1	540660	+		52190	20884	29791	29792	63990	63990					0.04243184505889985
VGRHQERRGLG	11	Unmodified	_VGRHQERRGLG_					0	0	0		ENST00000505764.5_1_4:156680186-156693798:+|nuORF	ENST00000505764.5_1_4:156680186-156693798:+|nuORF	ENST00000505764.5_1_4:156680186-156693798:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.9190368652344	3	422.23756	1263.69085	0.046588	1.9671E-05	0.20057	8.469E-05	0.24716	0.00010436	422.23702356836554	37.405	0.62066	37.498	37.302	37.922	0.093014					29	22	2	0	0	0	0.32798	1	7763	7763		6.2344	1.1868	1	109710			52191	11319	29792	29793	63991	63991					0.0695515173183594
VGRKEEIKEK	10	Unmodified	_VGRKEEIKEK_					0	0	0			REV__ENSG00000134001|ENST00000256383|EIF2S1	REV__ENSG00000134001|ENST00000256383|EIF2S1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.22454833984375	3	405.906705	1214.69829	-0.21647	-8.7867E-05	4.2909	0.0017417	4.0745	0.0016539	406.2431411914153	19.207	0.32214	19.151	18.931	19.253	-0.055693					12	10	2	0	0	0	0.32137	1	2149	2149		1.7423	0.41263	1	12631	+		52192	15648	29793	29794	63992	63992					0.0995244648888729
VGRKVTRP	8	Unmodified	_VGRKVTRP_					0	0	0			REV__ENST00000519857.5_1_8:38089361-38095786:+|nuORF	REV__ENST00000519857.5_1_8:38089361-38095786:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7777404785156	2	456.790518	911.566484	-0.2299	-0.00010502	0.1287	5.879E-05	-0.1012	-4.6228E-05	456.7904028849351	13.13	0.25113	13.13	13.031	13.282	0					12	8	2	0	0	0	0.34437	1	371	371		0.69038	0	1	18040	+		52193	13968	29794	29795	63993	63993					0.10716305982464291
VGRKVTRP	8	Unmodified	_VGRKVTRP_					0	0	0			REV__ENST00000519857.5_1_8:38089361-38095786:+|nuORF	REV__ENST00000519857.5_1_8:38089361-38095786:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	456.790518	911.566484	-0.24854	-0.00011353	0.06497	2.9678E-05	-0.18357	-8.3851E-05	456.78999523065517	13.184	0.22386	13.117	13.022	13.245	-0.067496	-0.0064667	-4.036E-05	NaN	0.69038	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16606	+		52194	13968	29794	29795							0.10716305982464291
VGRLGPRP	8	Unmodified	_VGRLGPRP_					0	0	0			REV__ENSG00000007047|ENST00000262891|MARK4	REV__ENSG00000007047|ENST00000262891|MARK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.2643737792969	2	426.264136	850.51372	-0.28319	-0.00012072	1.0689	0.00045562	0.78568	0.00033491	426.2646419573266	17.196	1.2132	17.079	16.418	17.631	-0.11739					104	43	4	0	0	0	0.41097	1	1542	1542		18.135	4.6271	1	641670	+		52195	13379	29795	29796	63994	63994					0.08248347919652588
VGRNSVLVK	9	Unmodified	_VGRNSVLVK_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.29071044921875	2	486.303458	970.592364	-0.034944	-1.6993E-05	-0.016763	-8.1518E-06	-0.051707	-2.5145E-05	486.30346941718597	12.521	0.43607	12.424	12.295	12.731	-0.096607					20	14	2	0	0	0	0.26145	1	208	208		2.0598	0	1	44539	+		52196	14131	29796	29797	63995	63995					0.10589155434081476
VGRNSVLVK	9	Unmodified	_VGRNSVLVK_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	486.303458	970.592364	-0.1014	-4.9309E-05	-0.1239	-6.0255E-05	-0.2253	-0.00010956	486.3034567695135	12.484	0.27671	12.484	12.364	12.641	0	0.029926	-9.1198E-05	NaN	2.0598	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49545	+		52197	14131	29796	29797							0.10589155434081476
VGRNSVLVK	9	Unmodified	_VGRNSVLVK_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	486.303458	970.592364	-0.14632	-7.1157E-05	0.21546	0.00010478	0.069137	3.3621E-05	486.3035510343716	12.523	0.26648	12.455	12.313	12.579	-0.06806	0.00027387	0.00023887	NaN	2.0598	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53562	+		52198	14131	29796	29797							0.10589155434081476
VGRPQPGL	8	Unmodified	_VGRPQPGL_					0	0	0			REV__ENST00000581192.1_1_18:72261063-72265606:-|nuORF	REV__ENST00000581192.1_1_18:72261063-72265606:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.5433044433594	2	412.24287	822.471186	-0.091535	-3.7735E-05	-0.47349	-0.00019519	-0.56503	-0.00023293	412.2427042771184	28.709	0.61694	28.709	28.418	29.035	0					33	21	3	0	0	0	0.34218	1	5127	5127		9.3474	3.587	1	145240	+		52199	22483	29797	29798	63996	63996					0.05284952791430442
VGRPQPGL	8	Unmodified	_VGRPQPGL_					0	0	0			REV__ENST00000581192.1_1_18:72261063-72265606:-|nuORF	REV__ENST00000581192.1_1_18:72261063-72265606:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	412.24287	822.471186	0.11621	4.7907E-05	-0.35363	-0.00014578	-0.23742	-9.7873E-05	412.24258583463126	28.752	0.46255	28.748	28.495	28.957	-0.0042572	0.0063769	-3.289E-05	NaN	9.3474	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142880	+		52200	22483	29797	29798							0.05284952791430442
VGRPQPGL	8	Unmodified	_VGRPQPGL_					0	0	0			REV__ENST00000581192.1_1_18:72261063-72265606:-|nuORF	REV__ENST00000581192.1_1_18:72261063-72265606:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	412.24287	822.471186	-0.038857	-1.6018E-05	0.041998	1.7313E-05	0.0031407	1.2947E-06	412.24264677570096	28.768	0.42239	28.768	28.524	28.946	0.0004673	0.026347	0.0002933	NaN	9.3474	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119220	+		52201	22483	29797	29798							0.05284952791430442
VGRPRHQV	8	Unmodified	_VGRPRHQV_					0	0	0		ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000482085.1_1_10:90708534-90712518:-|nuORF	ENST00000477812.1_1_7:5569027-5569288:-|nuORF	ENST00000477812.1_1_7:5569027-5569288:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.778564453125	2	474.777942	947.541332	0.32458	0.0001541	1.0491	0.00049807	1.3737	0.00065218	474.7785341644521	77.182	0.65391	77.182	76.902	77.555	0					47	23	3	0	0	0	0.35375	1	19892	19892		24.674	24.674	1	324740			52202	10962	29798	29799	63997	63997					0.06546251179895535
VGRRAPPN	8	Unmodified	_VGRRAPPN_					0	0	0			REV__ENST00000585111.1_1_17:62503346-62503505:-|nuORF	REV__ENST00000585111.1_1_17:62503346-62503505:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.885009765625	2	433.751393	865.488233	-0.42189	-0.000183	0.12695	5.5064E-05	-0.29495	-0.00012793	433.75135496383695	13.822	0.79926	13.822	13.365	14.164	0					39	27	2	0	0	0	0.344	1	632	632		0.69038	0	1	88966	+		52203	22507	29799	29800	63998	63998					0.050108733972138
VGRRNYRFF	9	Unmodified	_VGRRNYRFF_					0	0	0		nc|ENSG00000204160|Q9NUE0-2|ZDHHC18;ENSG00000204160|ENST00000374142|ZDHHC18	nc|ENSG00000204160|Q9NUE0-2|ZDHHC18	nc|ENSG00000204160|Q9NUE0-2|ZDHHC18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.9083251953125	3	405.55623	1213.64686	-0.024933	-1.0112E-05	2.3538	0.00095458	2.3288	0.00094447	405.55908177846015	30.251	0.78513	30.279	29.964	30.749	0.027946					65	27	4	0	0	0	0.26099	1	5650	5650		2.9952	0	1	125730			52204	8200	29800	29801	63999	63999					0.04858167305496863
VGRRNYRFF	9	Unmodified	_VGRRNYRFF_					0	0	0		nc|ENSG00000204160|Q9NUE0-2|ZDHHC18;ENSG00000204160|ENST00000374142|ZDHHC18	nc|ENSG00000204160|Q9NUE0-2|ZDHHC18	nc|ENSG00000204160|Q9NUE0-2|ZDHHC18	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	405.55623	1213.64686	0.0014906	6.0451E-07	1.5863	0.00064333	1.5878	0.00064393	405.5590839702041	30.245	0.64882	30.245	29.97	30.619	0	-0.016819	-0.00051083	NaN	2.9952	59	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225370			52205	8200	29800	29801							0.04858167305496863
VGRTAEGPL	9	Unmodified	_VGRTAEGPL_					0	0	0			REV__TRAPPC12|p.R321Q|1|0.35|ENSG00000171853|chr2:3388585-3388585|G/A|missense_variant	REV__TRAPPC12|p.R321Q|1|0.35|ENSG00000171853|chr2:3388585-3388585|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.5700988769531	2	450.250892	898.48723	0.020259	9.1216E-06	-0.012569	-5.659E-06	0.0076903	3.4626E-06	450.2507727533696	30.874	0.34228	30.902	30.749	31.091	0.027948					15	11	2	0	0	0	0.22596	1	5727	5727		21.747	0.20967	1	85998	+		52206	17671	29801	29802	64000	64000					0.03392614237657199
VGRTKDVK	8	Unmodified	_VGRTKDVK_					0	0	0		NCAPG|p.I307Kfs*2|1|0.36|ENSG00000109805|chr4:17817402-17817403|-/AA|frameshift_variant;ENSG00000109805|ENST00000251496|NCAPG	NCAPG|p.I307Kfs*2|1|0.36|ENSG00000109805|chr4:17817402-17817403|-/AA|frameshift_variant	NCAPG|p.I307Kfs*2|1|0.36|ENSG00000109805|chr4:17817402-17817403|-/AA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.2347106933594	2	451.774534	901.534515	-0.061847	-2.7941E-05	-1.0651	-0.00048121	-1.127	-0.00050915	451.7738906154044	15.596	0.32963	15.532	15.275	15.605	-0.064413					14	10	2	0	0	0	0.34367	1	1059	1059		4.3292	0	1	33009			52207	2275	29802	29803	64001	64001					0.07980893508647569
VGRVETGVLK	10	Unmodified	_VGRVETGVLK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000436459.2_1_9:135895553-135896258:+|nuORF	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3217163085938	2	529.321848	1056.62914	0.22864	0.00012102	-0.66302	-0.00035095	-0.43438	-0.00022993	529.3213762698866	28.341	0.66567	28.341	28.094	28.76	0					50	22	3	0	0	0	0.13784	2	4933	4933;4986		40.239	3.733	1	768000			52208	5239	29803	29804	64002;64003	64002					0.10309407260001535
VGRVETGVLK	10	Unmodified	_VGRVETGVLK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000436459.2_1_9:135895553-135896258:+|nuORF	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.3216552734375	2	529.321848	1056.62914	0.19012	0.00010063	-0.51351	-0.00027181	-0.32339	-0.00017118	529.3214944533678	28.294	0.66519	28.29	28.055	28.72	-0.0042572					53	23	3	0	0	0	0.24437	1	4965	4965		27.223	8.8501	1	744900			52209	5239	29803	29804	64004	64004					0.10309407260001535
VGRVETGVLK	10	Unmodified	_VGRVETGVLK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000436459.2_1_9:135895553-135896258:+|nuORF	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.321533203125	2	529.321848	1056.62914	0.17208	9.1085E-05	-0.52277	-0.00027671	-0.35069	-0.00018563	529.3214533295428	28.283	0.72308	28.284	27.992	28.715	0.0004673					62	25	4	0	0	0	0.10215	2	4904	4904;4959		47.594	5.7548	1	626350			52210	5239	29803	29804	64005;64006	64005					0.10309407260001535
VGRVIFGL	8	Unmodified	_VGRVIFGL_					0	0	0		ENST00000561048.1_1_15:64452264-64455191:-|nuORF;ENSG00000166794|ENST00000300026|PPIB	ENST00000561048.1_1_15:64452264-64455191:-|nuORF	ENST00000561048.1_1_15:64452264-64455191:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8882751464844	2	430.771263	859.527973	0.28107	0.00012108	1.1507	0.00049567	1.4317	0.00061675	430.7713730333481	33.917	0.82265	33.917	33.484	34.306	0					64	29	3	0	0	0	0.3439	1	6726	6726		2.8892	2.0956	1	512420			52211	6113	29804	29805	64007	64007					0.0925900034795859
VGRVIFGL	8	Unmodified	_VGRVIFGL_					0	0	0		ENST00000561048.1_1_15:64452264-64455191:-|nuORF;ENSG00000166794|ENST00000300026|PPIB	ENST00000561048.1_1_15:64452264-64455191:-|nuORF	ENST00000561048.1_1_15:64452264-64455191:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	430.771263	859.527973	0.51268	0.00022085	0.85427	0.00036799	1.3669	0.00058884	430.77130174678496	33.806	0.85432	33.873	33.38	34.235	0.06636	-0.0047071	-0.00030699	NaN	2.8892	71	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	482240			52212	6113	29804	29805							0.0925900034795859
VGRVIFGL	8	Unmodified	_VGRVIFGL_					0	0	0		ENST00000561048.1_1_15:64452264-64455191:-|nuORF;ENSG00000166794|ENST00000300026|PPIB	ENST00000561048.1_1_15:64452264-64455191:-|nuORF	ENST00000561048.1_1_15:64452264-64455191:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	430.771263	859.527973	-0.20653	-8.8968E-05	1.7676	0.00076144	1.5611	0.00067247	430.7716004706121	33.776	0.85148	33.843	33.387	34.239	0.0667	-0.034695	0.0004799	NaN	2.8892	65	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462570			52213	6113	29804	29805							0.0925900034795859
VGRVPISR	8	Unmodified	_VGRVPISR_					0	0	0			REV__nc|nan|Q8N5N4-2|C3orf22	REV__nc|nan|Q8N5N4-2|C3orf22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.2775573730469	2	442.277244	882.539935	-0.15472	-6.843E-05	0.46964	0.00020771	0.31491	0.00013928	442.2775773732984	12.434	0.2569	12.337	12.206	12.463	-0.096607					20	8	3	0	0	0	0.46461	1	155	155		0.79363	0	1	55308	+		52214	23269	29805	29806	64008	64008					0.09396617091135795
VGRVPLQL	8	Unmodified	_VGRVPLQL_					0	0	0		nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH	nc|ENSG00000102780|Q86XP1-5|DGKH	nc|ENSG00000102780|Q86XP1-5|DGKH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.2823486328125	2	441.281995	880.549437	0.40731	0.00017974	0.0082576	3.6439E-06	0.41557	0.00018338	441.28196371757826	54.033	0.46205	54.033	53.806	54.268	0					32	16	3	0	0	0	0.19197	1	12819	12819		44.407	0	1	402190			52215	1780	29806	29807	64009	64009					0.10438385376664883
VGRVPLQL	8	Unmodified	_VGRVPLQL_					0	0	0		nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH	nc|ENSG00000102780|Q86XP1-5|DGKH	nc|ENSG00000102780|Q86XP1-5|DGKH	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	441.281995	880.549437	0.32817	0.00014481	0.39165	0.00017283	0.71982	0.00031764	441.28222184862807	54.096	0.52189	54.08	53.893	54.415	-0.015919	0.023535	0.00019754	NaN	44.407	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331390			52216	1780	29806	29807							0.10438385376664883
VGSDSGRIVI	10	Unmodified	_VGSDSGRIVI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.D368Mfs*46|1|0.34|ENSG00000189091|chr16:70541700-70541701|-/AT|frameshift_variant;nc|ENSG00000189091|Q15393-2|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2740783691406	2	501.782556	1001.55056	0.40392	0.00020268	-0.77822	-0.0003905	-0.37431	-0.00018782	501.7821860130983	21.371	0.56605	21.321	21.008	21.574	-0.049377					43	18	3	0	0	0	0.31629	1	2758	2758		10.074	1.3285	1	137020			52217	7801	29807	29808	64010	64010					0.04984554954910436
VGSEAEKL	8	Unmodified	_VGSEAEKL_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.87237548828125	2	416.724175	831.433798	-0.46377	-0.00019326	-1.0765	-0.00044861	-1.5403	-0.00064187	416.72367896820055	34.543	0.53069	34.62	34.444	34.975	0.077377					35	18	3	0	0	0	0.34272	1	6924	6924		7.9102	5.3327	1	203670	+		52218	14196	29808	29809	64011	64011					0.011338167351482298
VGSFVKGRR	9	Unmodified	_VGSFVKGRR_					0	0	0			REV__ENST00000441741.5_1_1:39987992-39988118:-|nuORF	REV__ENST00000441741.5_1_1:39987992-39988118:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.30133056640625	2	503.30125	1004.58795	0.26084	0.00013128	-0.089471	-4.5031E-05	0.17137	8.625E-05	503.30116813551143	17.796	0.65118	17.796	17.537	18.188	0					41	21	2	0	0	0	0.21447	1	1768	1768		21.537	2.28	1	425500	+		52219	21053	29809	29810	64012	64012					0.08583691011187966
VGSHRSSI	8	Unmodified	_VGSHRSSI_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;ENST00000433355.6_1_6:146231577-146267398:-|nuORF	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2431335449219	2	421.727584	841.440614	-0.33699	-0.00014212	-0.59135	-0.00024939	-0.92834	-0.00039151	421.72712132292634	15.094	0.25586	15.094	14.925	15.181	0					12	8	2	0	0	0	0.34408	1	896	896		2.3027	2.3027	1	29898			52220	4711	29810	29811	64013	64013					0.013551744063761362
VGSICVFLRHI	11	Unmodified	_VGSICVFLRHI_					0	0	0			REV__nc|ENSG00000159733|Q9HCC9-5|ZFYVE28	REV__nc|ENSG00000159733|Q9HCC9-5|ZFYVE28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.734130859375	3	415.237509	1242.6907	-0.76389	-0.00031719	-0.14631	-6.0753E-05	-0.9102	-0.00037795	415.23764092537454	35.055	0.52493	35.132	34.893	35.418	0.077381					31	18	2	0	0	0	0.33085	1	6949	6949		5.5233	0.80737	1	186860	+		52221	16866	29811	29812	64014	64014					0.07906015687649415
VGSKHQLL	8	Unmodified	_VGSKHQLL_					0	0	0		ENST00000409535.6_1_3:51675821-51677903:+|nuORF	ENST00000409535.6_1_3:51675821-51677903:+|nuORF	ENST00000409535.6_1_3:51675821-51677903:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.6239013671875	2	441.263802	880.513051	-0.10418	-4.597E-05	0.077435	3.4169E-05	-0.026742	-1.18E-05	441.2639150462182	27.376	0.3058	27.355	27.188	27.493	-0.02141					12	10	2	0	0	0	0.34218	1	4673	4673		5.2307	0.47466	1	68191			52222	10250	29812	29813	64015	64015					0.06801508479941276
VGSLKLSAI	9	Unmodified	_VGSLKLSAI_					0	0	0			REV__Harlequin-int_dup21|chr1:46331236-46332068:-|3.510540639652003|0.0357277356843712|6.62|497.0|44|2|anti-sense	REV__Harlequin-int_dup21|chr1:46331236-46332068:-|3.510540639652003|0.0357277356843712|6.62|497.0|44|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	444.8909912109375	2	444.28166	886.548768	0.47089	0.00020921	-0.53602	-0.00023814	-0.06513	-2.8936E-05	444.281370018826	44.78	0.48658	44.855	44.643	45.129	0.075047					27	17	2	0	0	0	0.25938	1	10025	10025		4.3292	0	1	259790	+		52223	22709	29813	29814	64016	64016					0.10095545936940198
VGSLLRLI	8	Unmodified	_VGSLLRLI_					0	0	0			REV__ENSG00000108506|ENST00000251334|INTS2	REV__ENSG00000108506|ENST00000251334|INTS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.77410888671875	2	435.792195	869.569838	0.019327	8.4224E-06	-0.18526	-8.0733E-05	-0.16593	-7.2311E-05	435.79212377295715	56.984	0.48182	57.062	56.829	57.311	0.078671					28	17	2	0	0	0	0.26527	1	13665	13665		44.407	6.2558	1	245720	+		52224	14598	29814	29815	64017	64017					0.12983556036476784
VGSLLRLI	8	Unmodified	_VGSLLRLI_					0	0	0			REV__ENSG00000108506|ENST00000251334|INTS2	REV__ENSG00000108506|ENST00000251334|INTS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	435.792195	869.569838	-0.037537	-1.6358E-05	-0.20905	-9.1103E-05	-0.24659	-0.00010746	435.7920458671807	57.122	0.52106	57.103	56.92	57.441	-0.019081	0.053507	5.2509E-05	NaN	44.407	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243630	+		52225	14598	29814	29815							0.12983556036476784
VGSLSFYQFQ	10	Unmodified	_VGSLSFYQFQ_					0	0	0			REV__ENST00000219204.7_1_16:57286366-57286663:+|nuORF	REV__ENST00000219204.7_1_16:57286366-57286663:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.75537109375	2	588.290214	1174.56587	0.36097	0.00021235	-1.9759	-0.0011624	-1.615	-0.00095007	588.2900320610474	56.857	0.44689	56.936	56.756	57.203	0.078674					28	16	2	0	0	0	0.30586	1	13655	13655		19.257	0	1	246480	+		52226	19416	29815	29816	64018	64018					-0.014425782479065674
VGSPGARSV	9	Unmodified	_VGSPGARSV_					0	0	0		ENST00000572652.5_1_17:78194749-78195028:+|nuORF	ENST00000572652.5_1_17:78194749-78195028:+|nuORF	ENST00000572652.5_1_17:78194749-78195028:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5505065917969	2	415.229959	828.445365	-0.24186	-0.00010043	0.61744	0.00025638	0.37558	0.00015595	415.23016659874105	19.151	0.78589	19.151	18.814	19.6	0					51	27	2	0	0	0	0.25202	1	2166	2166		10.824	1.4765	1	165240			52227	12029	29816	29817	64019	64019					0.024280585491396778
VGSPKSRP	8	Unmodified	_VGSPKSRP_					0	0	0		ENST00000592298.5_1_19:9434932-9435064:+|nuORF	ENST00000592298.5_1_19:9434932-9435064:+|nuORF	ENST00000592298.5_1_19:9434932-9435064:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.88006591796875	2	414.240327	826.466101	0.15907	6.5893E-05	-0.086615	-3.588E-05	0.072453	3.0013E-05	414.240231989598	23.101	0.46492	23.056	22.76	23.225	-0.044867					27	16	2	0	0	0	0.34337	1	3289	3289		5.2307	0	1	39197			52228	12195	29817	29818	64020	64020					0.045926489288035555
VGSRDSSK	8	Unmodified	_VGSRDSSK_					0	0	0		ENSG00000130479|ENST00000324096|MAP1S;nc|ENSG00000130479|Q66K74-2|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	ENSG00000130479|ENST00000324096|MAP1S	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.5603332519531	2	418.217049	834.419545	-0.3817	-0.00015963	-0.75605	-0.00031619	-1.1378	-0.00047583	418.2167093952948	12.877	0.13734	12.877	12.815	12.952	0					6	4	2	0	0	0	0.34408	1	263	263		2.3027	0	1	7950.5			52229	3478	29818	29819	64021	64021					-0.004288356931397175
VGSSHETFTVF	11	Unmodified	_VGSSHETFTVF_					0	0	0			REV__ENST00000471490.1_1_21:45539071-45541135:+|nuORF	REV__ENST00000471490.1_1_21:45539071-45541135:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.5651550292969	3	404.196144	1209.5666	-1.58	-0.00063861	0.57705	0.00023324	-1.0029	-0.00040537	404.19652508866346	34.893	1.0129	34.968	34.496	35.509	0.075306					107	36	4	0	0	0	0.33064	1	6943	6943		7.9454	3.4165	1	996490	+		52230	19180	29819	29820	64022	64022					-0.02979783598857466
VGSSPDGSL	9	Unmodified	_VGSSPDGSL_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5364990234375	2	409.698158	817.381762	0.027042	1.1079E-05	-0.44097	-0.00018067	-0.41393	-0.00016959	409.69807474462107	28.814	0.51672	28.81	28.519	29.036	-0.0042572					29	17	3	0	0	0	0.1659	1	5032	5032		15.847	0	1	182230	+		52231	14895	29820	29821	64023	64023					-0.03423346678619055
VGSSPTLKN	9	Unmodified	_VGSSPTLKN_					0	0	0		ENSG00000109586|ENST00000265000|GALNT7	ENSG00000109586|ENST00000265000|GALNT7	ENSG00000109586|ENST00000265000|GALNT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7688293457031	2	451.750724	901.486896	-0.0043342	-1.958E-06	-0.025174	-1.1373E-05	-0.029509	-1.3331E-05	451.75066585338016	22.624	0.89283	22.537	22.245	23.138	-0.08761					69	31	3	0	0	0	0.25988	1	3265	3265		3.9444	0.3479	1	417350			52232	2260	29821	29822	64024	64024					0.03221194517800541
VGSTSENITQK	11	Unmodified	_VGSTSENITQK_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.2988891601562	2	582.298767	1162.58298	0.14114	8.2185E-05	0.22858	0.0001331	0.36972	0.00021529	582.2988929270674	19.525	0.50191	19.525	19.294	19.796	0					36	17	3	0	0	0	0.44443	1	2291	2291		5.4027	2.6675	1	86115			52233	852	29822	29823	64025	64025					0.00819297567227295
VGSTSENITQK	11	Unmodified	_VGSTSENITQK_					0	0	0		nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.29931640625	2	582.298767	1162.58298	0.35524	0.00020686	-0.21908	-0.00012757	0.13616	7.9284E-05	582.2985989325589	19.617	0.65049	19.561	19.253	19.904	-0.055693					44	22	4	0	0	0	0.39244	2	2275	2275;2325		12.228	5.1259	1	99374			52234	852	29822	29823	64026;64027	64026					0.00819297567227295
VGSYAENQ	8	Unmodified	_VGSYAENQ_					0	0	0		CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant;ENSG00000176102|ENST00000323959|CSTF3	CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	CSTF3|p.V609Cfs*11|1|0.18|ENSG00000176102|chr11:33085960-33085960|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.23779296875	2	434.195782	866.377011	-0.1807	-7.8459E-05	0.40953	0.00017781	0.22883	9.9355E-05	434.1958053227972	26.789	0.56299	26.789	26.528	27.091	0					38	19	3	0	0	0	0.34167	1	4466	4466		7.2892	0	1	165570			52235	246	29823	29824	64028	64028					-0.06152230821385274
VGTESETE	8	Unmodified	_VGTESETE_					0	0	0			REV__ENST00000451653.5_2_3:42591058-42591214:-|nuORF	REV__ENST00000451653.5_2_3:42591058-42591214:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.1851806640625	2	426.18508	850.355607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.171	1	23.084	22.584	23.584	-0.087608								0	0	0	0.37595	1	3370	3370		2.8892	0	1		+		52236	21122	29824	29825	64029	64029					-0.07555660640741735
VGTIEKVK	8	Unmodified	_VGTIEKVK_					0	0	0		ENSG00000187021|ENST00000358834|PNLIPRP1	ENSG00000187021|ENST00000358834|PNLIPRP1	ENSG00000187021|ENST00000358834|PNLIPRP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.5871887207031	2	437.273835	872.533118	-0.11721	-5.1254E-05	0.52875	0.00023121	0.41153	0.00017995	437.2741731242791	16.331	0.47479	16.331	16.184	16.659	0					26	16	2	0	0	0	0.34434	1	1288	1288		0.79363	0	1	25499			52237	7660	29825	29826	64030	64030					0.09175259419907889
VGTIQTRPG	9	Unmodified	_VGTIQTRPG_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;FAT4|p.I3381Kfs*8|1|0.06|ENSG00000196159|chr4:125451157-125451158|-/AACACTTCTCCAACAATAG|frameshift_variant;FAT4|p.I1879Nfs*5|1|0.29|ENSG00000196159|chr4:125408509-125408510|-/ATTT|frameshift_variant	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.7639465332031	2	464.764166	927.513779	-0.10157	-4.7204E-05	-0.16701	-7.762E-05	-0.26857	-0.00012482	464.763986720181	26.529	0.65059	26.491	26.069	26.72	-0.038671					41	22	2	0	0	0	0.23007	1	4394	4394		19.257	0	1	158960			52238	7830	29826	29827	64031	64031					0.047123031289856954
VGTKLPNS	8	Unmodified	_VGTKLPNS_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.2106628417969	2	408.23471	814.454868	-0.15976	-6.5221E-05	1.2356	0.00050443	1.0759	0.00043921	408.2353111404154	18.56	0.79681	18.443	18.065	18.862	-0.11739					51	27	3	0	0	0	0.34337	1	1926	1926		5.2307	0	1	101280			52239	530	29827	29828	64032	64032					0.040218268346734476
VGTKQQSI	8	Unmodified	_VGTKQQSI_					0	0	0			REV__ENST00000598502.5_1_19:49671539-49686431:+|nuORF	REV__ENST00000598502.5_1_19:49671539-49686431:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.2351989746094	2	430.745442	859.476331	-0.10733	-4.6234E-05	0.58162	0.00025053	0.47428	0.00020429	430.74569227297025	17.282	0.38242	17.282	17.186	17.568	0					31	13	3	0	0	0	0.34337	1	1666	1666		5.2307	0	1	67500	+		52240	15462	29828	29829	64033	64033					0.04097211863393113
VGTKSTQK	8	Unmodified	_VGTKSTQK_					0	0	0			REV__ENSG00000103888|ENST00000394685|CEMIP	REV__ENSG00000103888|ENST00000394685|CEMIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.2688293457031	2	424.745442	847.476331	-0.34348	-0.00014589	-3.3756	-0.0014338	-3.719	-0.0015796	424.7442557250442	15.093	0.10952	15.093	15.044	15.154	0					5	3	2	0	0	0	0.34434	1	910	910		0.79363	0	1	19383	+		52241	14386	29829	29830	64034	64034					0.04649211863375058
VGTKVKLP	8	Unmodified	_VGTKVKLP_					0	0	0		nc|ENSG00000163645|Q7L0X2-3|ERICH6;nc|ENSG00000163645|Q7L0X2-2|ERICH6;ENSG00000163645|ENST00000295910|ERICH6	nc|ENSG00000163645|Q7L0X2-3|ERICH6	nc|ENSG00000163645|Q7L0X2-3|ERICH6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.585693359375	2	421.278921	840.543289	-0.37639	-0.00015857	-0.19625	-8.2677E-05	-0.57265	-0.00024124	421.2787593615269	25.2	0.32638	25.168	25.021	25.347	-0.031408					17	11	2	0	0	0	0.3439	1	3960	3960		2.8892	2.0956	1	30273			52242	5715	29830	29831	64035	64035					0.11663867145136919
VGTLSDLTL	9	Unmodified	_VGTLSDLTL_					0	0	0		B4GALT5|p.Q206Lfs*7|1|0.09|ENSG00000158470|chr20:49640655-49640656|-/AAATCTGAAA|frameshift_variant	B4GALT5|p.Q206Lfs*7|1|0.09|ENSG00000158470|chr20:49640655-49640656|-/AAATCTGAAA|frameshift_variant	B4GALT5|p.Q206Lfs*7|1|0.09|ENSG00000158470|chr20:49640655-49640656|-/AAATCTGAAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7605895996094	2	459.760758	917.506963	0.13695	6.2966E-05	-0.16679	-7.6683E-05	-0.029836	-1.3717E-05	459.7606594181332	65.568	0.65686	65.568	65.242	65.899	0					56	23	3	0	0	0	0.037153	1	16342	16342		64.236	0	1	602080			52243	66	29831	29832	64036	64036					0.04490945457757789
VGTLSDLTL	9	Unmodified	_VGTLSDLTL_					0	0	0		B4GALT5|p.Q206Lfs*7|1|0.09|ENSG00000158470|chr20:49640655-49640656|-/AAATCTGAAA|frameshift_variant	B4GALT5|p.Q206Lfs*7|1|0.09|ENSG00000158470|chr20:49640655-49640656|-/AAATCTGAAA|frameshift_variant	B4GALT5|p.Q206Lfs*7|1|0.09|ENSG00000158470|chr20:49640655-49640656|-/AAATCTGAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.7608337402344	2	459.760758	917.506963	-0.16373	-7.5274E-05	0.16673	7.6655E-05	0.0030035	1.3809E-06	459.7608039660624	65.482	0.75689	65.571	65.216	65.973	0.088882					56	27	3	0	0	0	0.019896	1	16326	16326		64.236	0	1	450800			52244	66	29831	29832	64037	64037					0.04490945457757789
VGTQQFYPISF	11	Unmodified	_VGTQQFYPISF_					0	0	0			REV__nc|ENSG00000079739|P36871-3|PGM1	REV__nc|ENSG00000079739|P36871-3|PGM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.91888427734375	3	429.552039	1285.63429	-0.26443	-0.00011359	-0.73341	-0.00031504	-0.99784	-0.00042862	429.8866425435255	27.367	0.13973	27.346	27.242	27.382	-0.021412					5	4	2	0	0	0	0.33277	1	4627	4627		3.0723	0	1	14453	+		52245	13876	29832	29833	64038	64038					0.002896663319461368
VGTSWGETKRL	11	Unmodified	_VGTSWGETKRL_					0	0	0			REV__ENST00000586136.5_1_19:30097284-30104129:+|nuORF	REV__ENST00000586136.5_1_19:30097284-30104129:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.89813232421875	3	411.891055	1232.65134	-0.1661	-6.8413E-05	-0.33628	-0.00013851	-0.50237	-0.00020692	411.8908433245579	13.535	0.77789	13.436	13.189	13.967	-0.099291					63	27	4	0	0	0	0.44088	1	556	556		5.8681	1.462	1	392110	+		52246	22515	29833	29834	64039	64039					0.044315869377669515
VGTTSGPVR	9	Unmodified	_VGTTSGPVR_					0	0	0		ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000076356|ENST00000367033|PLXNA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.89288330078125	2	437.243067	872.47158	-0.1109	-4.8491E-05	0.20502	8.9642E-05	0.094113	4.115E-05	437.24314007757755	22.528	0.65195	22.44	22.138	22.79	-0.08761					36	23	2	0	0	0	0.24688	1	3174	3174		14.838	0	1	87622			52247	1063	29834	29835	64040	64040					0.03024327720618203
VGTTTKKL	8	Unmodified	_VGTTTKKL_					0	0	0			REV__nc|ENSG00000197647|Q8N7K0-2|ZNF433	REV__nc|ENSG00000197647|Q8N7K0-2|ZNF433	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.0815124511719	2	424.26601	846.517468	-0.28509	-0.00012096	1.5798	0.00067024	1.2947	0.00054928	424.2665622543432	18.008	0.37046	17.891	17.694	18.065	-0.11739					20	12	2	0	0	0	0.34434	1	1816	1816		0.79363	0.79363	1	51633	+		52248	18754	29835	29836	64041	64041					0.08806972902857524
VGTTTKKL	8	Unmodified	_VGTTTKKL_					0	0	0			REV__nc|ENSG00000197647|Q8N7K0-2|ZNF433	REV__nc|ENSG00000197647|Q8N7K0-2|ZNF433	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	424.26601	846.517468	-0.12335	-5.2335E-05	1.5412	0.00065386	1.4178	0.00060153	424.2666610453603	17.758	0.4228	17.758	17.537	17.96	0	-0.091863	-2.1287E-05	NaN	0.79363	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57133	+		52249	18754	29835	29836							0.08806972902857524
VGTTTKKL	8	Unmodified	_VGTTTKKL_					0	0	0			REV__nc|ENSG00000197647|Q8N7K0-2|ZNF433	REV__nc|ENSG00000197647|Q8N7K0-2|ZNF433	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	424.26601	846.517468	-0.18974	-8.0501E-05	1.5945	0.0006765	1.4048	0.000596	424.26659704802415	17.96	0.3803	17.9	17.676	18.056	-0.060431	0.050523	2.3985E-05	NaN	0.79363	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46084	+		52250	18754	29835	29836							0.08806972902857524
VGTTVLRKI	9	Unmodified	_VGTTVLRKI_					0	0	0			REV__nc|ENSG00000189060|P07305-2|H1-0	REV__nc|ENSG00000189060|P07305-2|H1-0	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.24847412109375	2	493.821484	985.628415	-0.52251	-0.00025803	0.68569	0.00033861	0.16319	8.0584E-05	493.821781285449	34.534	0.50328	34.534	34.336	34.839	0					39	17	3	0	0	0	0.24311	1	6823	6823		11.64	0	1	316750	+		52251	18595	29836	29837	64042	64042					0.13502612610943743
VGTTVLRKI	9	Unmodified	_VGTTVLRKI_					0	0	0			REV__nc|ENSG00000189060|P07305-2|H1-0	REV__nc|ENSG00000189060|P07305-2|H1-0	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2483215332031	2	493.821484	985.628415	-0.61271	-0.00030257	0.68496	0.00033825	0.07225	3.5678E-05	493.8217204656389	34.404	0.48822	34.478	34.299	34.787	0.074471					35	17	3	0	0	0	0.2322	1	6776	6776		20.454	4.6064	1	332930	+		52252	18595	29836	29837	64043	64043					0.13502612610943743
VGVAHFLLQRK	11	Unmodified	_VGVAHFLLQRK_					0	0	0		nc|ENSG00000144711|Q6DN90-2|IQSEC1;nc|ENSG00000144711|Q6DN90|IQSEC1;ENSG00000144711|ENST00000613206|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.2701721191406	3	423.259302	1266.75608	0.0056344	2.3848E-06	-0.16323	-6.9087E-05	-0.15759	-6.6702E-05	423.25918994532924	21.775	1.2995	21.675	20.933	22.233	-0.10034					84	46	3	0	0	0	0.46392	1	3073	3073		2.8433	1.101	1	252940			52253	4604	29837	29838	64044	64044					0.1333675320495331
VGVAHFLLQRK	11	Unmodified	_VGVAHFLLQRK_					0	0	0		nc|ENSG00000144711|Q6DN90-2|IQSEC1;nc|ENSG00000144711|Q6DN90|IQSEC1;ENSG00000144711|ENST00000613206|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.2701110839844	3	423.259302	1266.75608	-0.063637	-2.6935E-05	0.011696	4.9506E-06	-0.051941	-2.1984E-05	423.25927267095017	21.736	1.3172	21.687	21.179	22.496	-0.049377					86	46	4	0	0	0	0.46554	1	3039	3039		2.6312	0.19645	1	257540			52254	4604	29837	29838	64045	64045					0.1333675320495331
VGVAQRHI	8	Unmodified	_VGVAQRHI_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.88238525390625	2	440.261594	878.508634	-0.20723	-9.1238E-05	-0.17435	-7.676E-05	-0.38159	-0.000168	440.2615460462376	14.007	0.18272	14.007	13.872	14.055	0					8	5	2	0	0	0	0.34434	1	591	591		0.79363	0	1	21139			52255	5669	29838	29839	64046	64046					0.06452044057027706
VGVAQRHI	8	Unmodified	_VGVAQRHI_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.88226318359375	2	440.261594	878.508634	-0.21495	-9.4633E-05	-0.066854	-2.9433E-05	-0.2818	-0.00012407	440.2615365246	14.071	0.18079	14.005	13.889	14.07	-0.066068					8	5	2	0	0	0	0.34434	1	613	613		0.79363	0	1	30399			52256	5669	29838	29839	64047	64047					0.06452044057027706
VGVAQRRG	8	Unmodified	_VGVAQRRG_					0	0	0			REV__ENSG00000282936|ENST00000634965|unknown	REV__ENSG00000282936|ENST00000634965|unknown	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7510986328125	2	421.751393	841.488233	-0.011083	-4.6743E-06	0.062758	2.6468E-05	0.051674	2.1794E-05	421.751316250971	68.105	2.9382	68.088	66.631	69.569	-0.016716					195	104	2	0	0	0	0.45942	1	17225	17225		2.5775	0	1	488640	+		52257	19364	29839	29840	64048	64048					0.061148733972345326
VGVARRPD	8	Unmodified	_VGVARRPD_					0	0	0			REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.25115966796875	2	435.251226	868.487899	-0.13187	-5.7398E-05	-0.032972	-1.4351E-05	-0.16484	-7.1749E-05	435.25105337760704	69.122	2.4265	69.122	67.783	70.209	0					208	88	3	0	0	0	0.46022	2	17336	17336;17383		2.3027	0	1	1167900	+		52258	14569	29840	29841	64049;64050	64049					0.048394536773685104
VGVARRPD	8	Unmodified	_VGVARRPD_					0	0	0			REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2511901855469	2	435.251226	868.487899	-0.019216	-8.3639E-06	-0.2246	-9.7757E-05	-0.24382	-0.00010612	435.25100893215125	68.817	1.8957	68.889	68.383	70.279	0.071938					127	68	2	0	0	0	0.45169	1	17341	17341		5.2307	0	1	1228300	+		52259	14569	29840	29841	64051	64051					0.048394536773685104
VGVARRPD	8	Unmodified	_VGVARRPD_					0	0	0			REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	REV__nc|ENSG00000107864|Q8NE35-2|CPEB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2511901855469	2	435.251226	868.487899	-0.084475	-3.6768E-05	-0.094405	-4.109E-05	-0.17888	-7.7858E-05	435.2510260076979	69.19	1.906	69.171	68.344	70.25	-0.019524					190	68	3	0	0	0	0.45169	1	17400	17400		5.2307	0	1	1262500	+		52260	14569	29840	29841	64052	64052					0.048394536773685104
VGVHLLGQ	8	Unmodified	_VGVHLLGQ_					0	0	0			REV__ENST00000326474.4_2_3:159944631-159944829:+|nuORF	REV__ENST00000326474.4_2_3:159944631-159944829:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.52911376953125	2	411.745245	821.475937	-0.00075122	-3.0931E-07	-0.41004	-0.00016883	-0.41079	-0.00016914	411.74515781204013	18.7	0.43929	18.582	18.295	18.734	-0.11739					21	14	2	0	0	0	0.34319	1	2040	2040		2.5775	0	1	39759	+		52261	20003	29841	29842	64053	64053					0.05805836934189301
VGVILKKV	8	Unmodified	_VGVILKKV_					0	0	0			REV__ENST00000420064.1_1_3:193296708-193296948:-|nuORF	REV__ENST00000420064.1_1_3:193296708-193296948:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.20574951171875	2	428.304939	854.595324	-0.17309	-7.4137E-05	3.8496	0.0016488	3.6765	0.0015747	428.3060223860257	16.238	0.50941	16.176	15.756	16.266	-0.062534					25	17	2	0	0	0	0.34434	1	1146	1146		0.79363	0	1	28631	+		52262	20850	29842	29843	64054	64054					0.16221030558892835
VGVIPNLI	8	Unmodified	_VGVIPNLI_					0	0	0		ENSG00000134007|ENST00000256389|ADAM20	ENSG00000134007|ENST00000256389|ADAM20	ENSG00000134007|ENST00000256389|ADAM20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.209716796875	2	412.765646	823.516739	0.20235	8.3524E-05	0.058727	2.424E-05	0.26108	0.00010776	412.76650929065005	38.212	0.9127	38.309	37.981	38.893	0.097527					46	32	2	0	0	0	0.34319	1	7901	7901		5.7604	0	1	118740			52263	3746	29843	29844	64055	64055					0.09792178253815109
VGVKEGLYKIL	11	Unmodified	_VGVKEGLYKIL_					0	0	0			REV__ENSG00000173545|ENST00000308683|ZNF622	REV__ENSG00000173545|ENST00000308683|ZNF622	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.9067687988281	3	406.920063	1217.73836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.209	1	36.209	35.709	36.709	0								0	0	0	0.35732	1	7332	7332		6.6235	1.2207	1		+		52264	17787	29844	29845	64056	64056					0.13819993159472688
VGVKTDVVT	9	Unmodified	_VGVKTDVVT_					0	0	0		ENSG00000101638|ENST00000315087|ST8SIA5;nc|ENSG00000101638|O15466-2|ST8SIA5	ENSG00000101638|ENST00000315087|ST8SIA5	ENSG00000101638|ENST00000315087|ST8SIA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7560729980469	2	459.26875	916.522947	-0.013168	-6.0476E-06	-0.23827	-0.00010943	-0.25143	-0.00011548	459.26899617866866	33.075	0.3912	33.075	32.811	33.202	0					20	13	2	0	0	0	0.26612	1	6350	6350		13.906	2.2658	1	88122			52265	1713	29845	29846	64057	64057					0.06134651694674176
VGVLKKRLF	9	Unmodified	_VGVLKKRLF_					0	0	0			REV__ENST00000370500.9_1_1:89323107-89325618:-|nuORF	REV__ENST00000370500.9_1_1:89323107-89325618:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3541870117188	2	530.355494	1058.69644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.39	1	112.39	111.89	112.89	0								0	0	0	0.26704	1	29214	29214		0.6015	0	1		+		52266	20380	29846	29847	64058	64058					0.16943482261581266
VGVLLFLA	8	Unmodified	_VGVLLFLA_					0	0	0			REV__ENSG00000111897|ENST00000339697|SERINC1	REV__ENSG00000111897|ENST00000339697|SERINC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9145202636719	2	416.270564	830.526576	0.025934	1.0796E-05	-3.925	-0.0016339	-3.899	-0.0016231	416.2687240830706	16.459	0.17278	16.345	16.304	16.476	-0.11434					6	5	2	0	0	0	0.3439	1	1359	1359		2.8892	0	1	17575	+		52267	14744	29847	29848	64059	64059					0.10453366259173436
VGVLVFTQFWF	11	Unmodified	_VGVLVFTQFWF_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.5611572265625	3	448.244658	1341.71214	0.0029027	1.3011E-06	-3.3921	-0.0015205	-3.3892	-0.0015192	448.24344267035167	18.175	0.54502	18.117	17.768	18.313	-0.058172					25	19	2	0	0	0	0.33334	1	1799	1799		1.2148	0.20126	1	26769			52268	6741	29848	29849	64060	64060					0.05495723987951351
VGVPRRTA	8	Unmodified	_VGVPRRTA_					0	0	0		ENST00000206595.10_1_14:31028388-31028445:+|nuORF	ENST00000206595.10_1_14:31028388-31028445:+|nuORF	ENST00000206595.10_1_14:31028388-31028445:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.26153564453125	2	428.261594	854.508634	-0.20979	-8.9845E-05	0.16087	6.8896E-05	-0.048916	-2.0949E-05	428.2616366316765	80.491	1.9251	80.556	80.157	82.082	0.065094					155	85	2	0	0	0	0.45169	3	20838	20838;21019;21084		5.2307	0	1	14228000			52269	8803	29849	29850	64061;64062;64063	64061					0.0755604405703707
VGVPTRAR	8	Unmodified	_VGVPTRAR_					0	0	0		ENST00000436072.6_1_7:37955747-37956332:-|nuORF	ENST00000436072.6_1_7:37955747-37956332:-|nuORF	ENST00000436072.6_1_7:37955747-37956332:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.2616271972656	2	428.261594	854.508634	-0.093055	-3.9852E-05	-0.71231	-0.00030506	-0.80537	-0.00034491	428.2615507169743	80.529	2.0429	80.529	79.981	82.024	0					263	86	5	0	0	0	0.45169	4	20871	20871;20921;21055;21096		5.2307	0	1	13058000			52270	10517	29850	29851	64064;64065;64066;64067	64064					0.07556044057025701
VGVPTRAR	8	Unmodified	_VGVPTRAR_					0	0	0		ENST00000436072.6_1_7:37955747-37956332:-|nuORF	ENST00000436072.6_1_7:37955747-37956332:-|nuORF	ENST00000436072.6_1_7:37955747-37956332:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2616882324219	2	428.261594	854.508634	-0.044126	-1.8897E-05	-0.2452	-0.00010501	-0.28933	-0.00012391	428.26149196599977	80.59	2.1301	80.563	80.06	82.19	-0.026825					150	85	2	0	0	0	0.45169	4	20862	20862;21012;21058;21103		5.2307	0	1	14387000			52271	10517	29850	29851	64068;64069;64070;64071	64068					0.07556044057025701
VGVRPNLL	8	Unmodified	_VGVRPNLL_					0	0	0		ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	ENSG00000131781|ENST00000254090|FMO5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.2741394042969	2	434.27417	866.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.854	1	39.954	39.454	40.454	0.099407								0	0	0	0.33941	1	8439	8439		19.439	1.304	1				52272	3591	29851	29852	64072	64072					0.09518098859598467
VGVSTLQI	8	Unmodified	_VGVSTLQI_					0	0	0			REV__ENSG00000135577|ENST00000258042|NMBR	REV__ENSG00000135577|ENST00000258042|NMBR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.7524719238281	2	408.744911	815.475269	-0.0067129	-2.7438E-06	-0.4319	-0.00017653	-0.43861	-0.00017928	408.7446649995364	63.365	0.33656	63.365	63.195	63.532	0					17	11	2	0	0	0	0.19197	1	15724	15724		44.407	6.2558	1	128080	+		52273	15749	29852	29853	64073	64073					0.060149974944692985
VGVSTLQI	8	Unmodified	_VGVSTLQI_					0	0	0			REV__ENSG00000135577|ENST00000258042|NMBR	REV__ENSG00000135577|ENST00000258042|NMBR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	408.744911	815.475269	-0.0067129	-2.7438E-06	-0.4319	-0.00017653	-0.43861	-0.00017928	408.7446649995364	63.365	0.33656	63.365	63.195	63.532	0	-0.0013345	-0.00010867	NaN	44.407	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128080	+		52274	15749	29852	29853							0.060149974944692985
VGVSTLQI	8	Unmodified	_VGVSTLQI_					0	0	0			REV__ENSG00000135577|ENST00000258042|NMBR	REV__ENSG00000135577|ENST00000258042|NMBR	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	408.744911	815.475269	0.14415	5.892E-05	-0.19475	-7.9604E-05	-0.050604	-2.0684E-05	408.7446680636928	63.272	0.44327	63.368	63.148	63.591	0.095722	0.0013345	8.5192E-05	NaN	44.407	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125810	+		52275	15749	29852	29853							0.060149974944692985
VGVTINVL	8	Unmodified	_VGVTINVL_					0	0	0		nc|ENSG00000156453|Q08174|PCDH1;ENST00000511044.1_1_5:141242715-141245657:-|nuORF;ENSG00000156453|ENST00000287008|PCDH1	nc|ENSG00000156453|Q08174|PCDH1	nc|ENSG00000156453|Q08174|PCDH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5534362792969	2	407.755278	813.496004	-0.19695	-8.0309E-05	-2.7999	-0.0011417	-2.9969	-0.001222	407.75548388987	31.131	0.16564	31.131	30.979	31.144	0					6	5	2	0	0	0	0.3439	1	5760	5760		2.8892	0	1	36753			52276	12771	29853	29854	64074	64074					0.08179587874133176
VGVVDTRK	8	Unmodified	_VGVVDTRK_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.5870361328125	2	437.261259	872.507966	-0.10581	-4.6265E-05	-0.48626	-0.00021262	-0.59206	-0.00025889	437.2609199229837	16.133	0.43204	16.071	15.866	16.298	-0.062534					22	14	2	0	0	0	0.34434	1	1287	1287		0.79363	0	1	51106			52277	2120	29854	29855	64075	64075					0.06661204617319072
VGVVDTRK	8	Unmodified	_VGVVDTRK_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	437.261259	872.507966	-0.17061	-7.4602E-05	-0.12443	-5.4407E-05	-0.29504	-0.00012901	437.2611513673748	16.163	0.32489	16.049	15.866	16.191	-0.11434	-0.010086	0.00014931	NaN	0.79363	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46804			52278	2120	29854	29855							0.06661204617319072
VGVVFVLL	8	Unmodified	_VGVVFVLL_					0	0	0			REV__F2RL2|p.L344Ffs*5|1|0.03|ENSG00000164220|chr5:76617678-76617679|-/C|frameshift_variant	REV__F2RL2|p.L344Ffs*5|1|0.03|ENSG00000164220|chr5:76617678-76617679|-/C|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.8768310546875	2	423.278389	844.542226	-0.083711	-3.5433E-05	0.53115	0.00022482	0.44743	0.00018939	423.27851325793625	42.829	0.51385	42.915	42.676	43.19	0.085197					24	18	2	0	0	0	0.3439	1	9294	9294		2.8892	0	1	125550	+		52279	17139	29855	29856	64076	64076					0.11373652776239851
VGVVVYVAP	9	Unmodified	_VGVVVYVAP_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000504793.1_1_4:169337857-169343051:-|nuORF	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7799072265625	2	451.770929	901.527304	0.41397	0.00018702	-0.41138	-0.00018585	0.0025958	1.1727E-06	451.77060741180077	76.812	0.78487	76.78	76.452	77.237	-0.031387					66	28	3	0	0	0	0.25291	1	19697	19697		5.2307	0.47466	1	675780			52280	7232	29856	29857	64077	64077					0.07260160908231228
VGWMYTRFW	9	Unmodified	_VGWMYTRFW_					0	0	0			REV__ENST00000532395.5_1_17:72947667-72950470:-|nuORF	REV__ENST00000532395.5_1_17:72947667-72950470:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.1829528808594	3	415.867305	1244.58008	-0.10118	-4.2076E-05	0.28073	0.00011675	0.17955	7.467E-05	416.20103629719307	25.145	0.17505	25.145	25.064	25.239	0					8	5	2	0	0	0	0.26117	1	3964	3964		1.1933	0.41681	1	16421	+		52281	17416	29857	29858	64078	64078					-0.03242204300613594
VGWWDQFKR	9	Unmodified	_VGWWDQFKR_					0	0	0		ENST00000586275.1_1_19:10563984-10570204:+|nuORF;nc|ENSG00000065989|P27815-4|PDE4A	ENST00000586275.1_1_19:10563984-10570204:+|nuORF	ENST00000586275.1_1_19:10563984-10570204:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.5565490722656	3	407.876969	1220.60908	0.1107	4.515E-05	2.8656	0.0011688	2.9763	0.001214	407.8779619638789	21.224	0.65328	21.171	20.917	21.571	-0.05291					32	22	2	0	0	0	0.26117	1	2874	2874		1.1933	0.73882	1	57189			52282	12115	29858	29859	64079	64079					0.007596563200195305
VGYIDEPCVEL	11	Unmodified	_VGYIDEPCVEL_					0	0	0			REV__ENSG00000142102|ENST00000409548|PGGHG	REV__ENSG00000142102|ENST00000409548|PGGHG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2116394042969	3	412.865407	1235.57439	-0.065657	-2.7108E-05	0.5413	0.00022348	0.47564	0.00019637	412.8655971677262	34.165	0.34109	34.232	34.12	34.461	0.06636					14	11	2	0	0	0	0.44192	1	6753	6753		2.6312	0	1	76351	+		52283	16101	29859	29860	64080	64080					-0.033973923935946004
VGYLVRLV	8	Unmodified	_VGYLVRLV_					0	0	0		ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7922668457031	2	459.792195	917.569838	0.17188	7.903E-05	0.041448	1.9057E-05	0.21333	9.8087E-05	459.79217919238266	58.541	0.78108	58.541	58.243	59.024	0					53	26	3	0	0	0	0.10069	2	14177	14177;14235		60.39	22.238	1	890810			52284	6975	29860	29861	64081;64082	64081					0.10775556036458056
VGYLVRLV	8	Unmodified	_VGYLVRLV_					0	0	0		ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.79229736328125	2	459.792195	917.569838	0.14006	6.4401E-05	0.14347	6.5964E-05	0.28353	0.00013036	459.7921796128229	58.394	0.73364	58.485	58.168	58.902	0.091301					60	25	3	0	0	0	0.10069	2	14126	14126;14173		60.39	22.238	1	859630			52285	6975	29860	29861	64083;64084	64083					0.10775556036458056
VGYLVRLV	8	Unmodified	_VGYLVRLV_					0	0	0		ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	ENSG00000177283|ENST00000374694|FZD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7920227050781	2	459.792195	917.569838	0.49736	0.00022868	-0.30162	-0.00013868	0.19573	8.9997E-05	459.79197197764864	58.529	0.69836	58.515	58.278	58.977	-0.014267					51	24	3	0	0	0	0.10069	1	14200	14200		60.39	22.238	1	861530			52286	6975	29860	29861	64085	64085					0.10775556036458056
VGYMLLLVVCL	11	Unmodified	_VGYMLLLVVCL_					0	0	0		ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.54522705078125	3	408.236118	1221.68652	0.096429	3.9366E-05	-2.6207	-0.0010699	-2.5243	-0.0010305	408.2349455756698	30.454	0.64722	30.482	30.131	30.778	0.027946					44	22	3	0	0	0	0.31739	1	5565	5565		21.59	6.633	1	134920			52287	7757	29861	29862	64086	64086					0.08454790149721703
VGYMLLLVVCL	11	Unmodified	_VGYMLLLVVCL_					0	0	0		ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	408.236118	1221.68652	0.00058655	2.3945E-07	-2.736	-0.001117	-2.7355	-0.0011167	408.2350716324714	30.345	0.63838	30.345	30.088	30.727	0	-0.073713	-0.0003379	NaN	21.59	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112250			52288	7757	29861	29862							0.08454790149721703
VGYMLLLVVCL	11	Unmodified	_VGYMLLLVVCL_					0	0	0		ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	408.236118	1221.68652	-0.262	-0.00010696	-2.2139	-0.00090378	-2.4759	-0.0010107	408.23531167089396	30.402	0.54399	30.429	30.189	30.733	0.027157	0.010491	0.00030161	NaN	21.59	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142460			52289	7757	29861	29862							0.08454790149721703
VGYRAVGP	8	Unmodified	_VGYRAVGP_					0	0	0			REV__ENST00000468504.5_1_9:116152961-116155869:-|nuORF	REV__ENST00000468504.5_1_9:116152961-116155869:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5318298339844	2	409.729595	817.444637	-0.21695	-8.8892E-05	0.67542	0.00027674	0.45846	0.00018785	409.7298301153538	14.386	0.40639	14.282	14.159	14.565	-0.10466					21	13	2	0	0	0	0.3439	1	697	697		2.8892	0	1	46929	+		52290	16417	29862	29863	64087	64087					0.02861263900092581
VGYRAVGP	8	Unmodified	_VGYRAVGP_					0	0	0			REV__ENST00000468504.5_1_9:116152961-116155869:-|nuORF	REV__ENST00000468504.5_1_9:116152961-116155869:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.27960205078125	2	409.729595	817.444637	-0.25254	-0.00010347	0.69201	0.00028354	0.43947	0.00018007	409.72985492091624	14.394	0.40639	14.328	14.181	14.588	-0.066068					24	14	2	0	0	0	0.3439	1	675	675		2.8892	0	1	51920	+		52291	16417	29862	29863	64088	64088					0.02861263900092581
VGYSTLFF	8	Unmodified	_VGYSTLFF_					0	0	0			REV__ENST00000543124.1_1_12:133624462-133624816:+|nuORF	REV__ENST00000543124.1_1_12:133624462-133624816:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2390441894531	2	467.239461	932.46437	-0.33291	-0.00015555	-0.013971	-6.5277E-06	-0.34688	-0.00016208	467.23929251135974	28.049	0.83663	28.049	27.441	28.277	0					43	28	2	0	0	0	0.4397	1	4824	4824		9.3474	1.4373	1	140290	+		52292	22145	29863	29864	64089	64089					-0.004564048797988107
VGYSTLFF	8	Unmodified	_VGYSTLFF_					0	0	0			REV__ENST00000543124.1_1_12:133624462-133624816:+|nuORF	REV__ENST00000543124.1_1_12:133624462-133624816:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	467.239461	932.46437	-0.33291	-0.00015555	-0.013971	-6.5277E-06	-0.34688	-0.00016208	467.23929251135974	28.049	0.83663	28.049	27.441	28.277	0	0.091313	0.00015016	NaN	9.3474	43	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140290	+		52293	22145	29863	29864							-0.004564048797988107
VGYSTLFF	8	Unmodified	_VGYSTLFF_					0	0	0			REV__ENST00000543124.1_1_12:133624462-133624816:+|nuORF	REV__ENST00000543124.1_1_12:133624462-133624816:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	467.239461	932.46437	-0.26405	-0.00012337	-0.18135	-8.4735E-05	-0.4454	-0.00020811	467.2393035860277	27.958	0.75518	27.954	27.604	28.359	-0.0042572	-0.0039673	-6.2589E-06	NaN	9.3474	44	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128250	+		52294	22145	29863	29864							-0.004564048797988107
VGYVVPNR	8	Unmodified	_VGYVVPNR_					0	0	0			REV__ENSG00000153993|ENST00000284136|SEMA3D	REV__ENSG00000153993|ENST00000284136|SEMA3D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.5986633300781	2	452.255977	902.497401	-0.12192	-5.5138E-05	-4.234	-0.0019148	-4.3559	-0.00197	452.2538077159357	12.638	0.3203	12.538	12.353	12.673	-0.099291					16	10	2	0	0	0	0.3439	1	140	140		2.8892	2.2877	1	16834	+		52295	16643	29864	29865	64090	64090					0.04225221962906289
VHADRNTFHRF	11	Unmodified	_VHADRNTFHRF_					0	0	0		ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2;ENSG00000116337|ENST00000528667|AMPD2	ENST00000526301.5_1_1:110162158-110172443:+|nuORF	ENST00000526301.5_1_1:110162158-110172443:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2372741699219	3	467.237448	1398.69051	-0.2142	-0.00010008	-0.26288	-0.00012283	-0.47709	-0.00022291	467.23735542551066	23.097	0.74001	23.097	22.708	23.448	0					67	25	4	0	0	0	0.33432	2	3322	3322;3378		19.144	19.144	1	316270			52296	2722	29865	29866	64091;64092	64091					0.00711732011973254
VHADRNTFHRF	11	Unmodified	_VHADRNTFHRF_					0	0	0		ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2;ENSG00000116337|ENST00000528667|AMPD2	ENST00000526301.5_1_1:110162158-110172443:+|nuORF	ENST00000526301.5_1_1:110162158-110172443:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2371520996094	3	467.237448	1398.69051	-0.1318	-6.1581E-05	-0.25361	-0.00011849	-0.3854	-0.00018008	467.23737877265967	23.152	0.72505	23.064	22.79	23.515	-0.087608					67	25	4	0	0	0	0.3013	1	3350	3350		22.109	15.485	1	330200			52297	2722	29865	29866	64093	64093					0.00711732011973254
VHADRNTFHRF	11	Unmodified	_VHADRNTFHRF_					0	0	0		ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2;ENSG00000116337|ENST00000528667|AMPD2	ENST00000526301.5_1_1:110162158-110172443:+|nuORF	ENST00000526301.5_1_1:110162158-110172443:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.237060546875	3	467.237448	1398.69051	0.1628	7.6067E-05	-0.51829	-0.00024216	-0.35549	-0.0001661	467.23721182439544	23.181	1.0049	23.136	22.898	23.903	-0.044867					85	35	4	0	0	0	0.34327	2	3355	3355;3405		18.34	11.716	1	337480			52298	2722	29865	29866	64094;64095	64094					0.00711732011973254
VHAGRQTFHRF	11	Unmodified	_VHAGRQTFHRF_					0	0	0		ENST00000534047.5_1_11:10503676-10517278:+|nuORF;nc|ENSG00000133805|Q01432-6|AMPD3;nc|ENSG00000133805|Q01432-3|AMPD3;ENSG00000133805|ENST00000396553|AMPD3;nc|ENSG00000133805|Q01432-5|AMPD3;nc|ENSG00000133805|Q01432-4|AMPD3	ENST00000534047.5_1_11:10503676-10517278:+|nuORF	ENST00000534047.5_1_11:10503676-10517278:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.25018310546875	3	452.574172	1354.70069	0.42196	0.00019097	-0.45053	-0.0002039	-0.028572	-1.2931E-05	452.57396739155445	20.105	0.27138	20.049	19.877	20.149	-0.055693					15	9	2	0	0	0	0.46842	1	2439	2439		2.2527	0.16876	1	83831			52299	3730	29866	29867	64096	64096					0.03752339737184229
VHAKHLNKI	9	Unmodified	_VHAKHLNKI_					0	0	0		ENST00000474240.1_1_6:127637576-127637633:-|nuORF;ENST00000454859.7_1_6:127635969-127637633:-|nuORF	ENST00000474240.1_1_6:127637576-127637633:-|nuORF	ENST00000474240.1_1_6:127637576-127637633:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.324951171875	2	530.324725	1058.6349	0.40117	0.00021275	-0.080907	-4.2907E-05	0.32027	0.00016984	530.3245198123499	19.327	0.82721	19.271	18.961	19.788	-0.055693					59	28	3	0	0	0	0.33276	1	2247	2247		3.9444	1.6417	1	162690			52300	10683	29867	29868	64097	64097					0.10792550562314318
VHAKYFLTYLF	11	Unmodified	_VHAKYFLTYLF_					0	0	0			REV__ENSG00000090402|ENST00000264382|SI	REV__ENSG00000090402|ENST00000264382|SI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.76373291015625	3	467.923696	1400.74926	0.29963	0.0001402	1.022	0.00047821	1.3216	0.00061841	467.92442750193595	23.872	0.34171	23.833	23.651	23.993	-0.038927					14	11	2	0	0	0	0.33296	1	3600	3600		2.6312	0	1	86631	+		52301	14042	29868	29869	64098	64098					0.064913955337488
VHAVIANVDF	10	Unmodified	_VHAVIANVDF_					0	0	0			REV__ENSG00000087301|ENST00000281741|TXNDC16	REV__ENSG00000087301|ENST00000281741|TXNDC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3092651367188	2	542.792924	1083.57129	1.1795	0.00064022	-0.86901	-0.00047169	0.31049	0.00016853	542.7923406734565	50.357	0.76281	50.402	50.136	50.898	0.044891					52	27	4	0	0	0	0.31395	1	11806	11806		7.9102	0	1	517790	+		52302	13994	29869	29870	64099	64099					0.032851453345756454
VHAVRRPKE	9	Unmodified	_VHAVRRPKE_					0	0	0			REV__ENST00000440735.2_2_13:111642507-111642792:+|nuORF	REV__ENST00000440735.2_2_13:111642507-111642792:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.3279418945312	2	546.325257	1090.63596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.91	1	114.92	114.42	115.42	0.016708								0	0	0	0.264	1	29871	29871		1.8442	0	1		+		52303	21046	29870	29871	64100	64100					0.09426764931231446
VHAVRTVPH	9	Unmodified	_VHAVRTVPH_					0	0	0		ENST00000462880.1_1_1:153631216-153631939:+|nuORF	ENST00000462880.1_1_1:153631216-153631939:+|nuORF	ENST00000462880.1_1_1:153631216-153631939:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2839660644531	2	508.293425	1014.5723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.489	1	38.587	38.087	39.087	0.097527								0	0	0	0.22666	1	8022	8022		13.906	4.5229	1				52304	10759	29871	29872	64101	64101					0.06559404494134924
VHCLGFGPG	9	Unmodified	_VHCLGFGPG_					0	0	0		ENST00000521795.1_1_8:120865268-120868035:-|nuORF;ENSG00000136982|ENST00000313655|DSCC1	ENST00000521795.1_1_8:120865268-120868035:-|nuORF	ENST00000521795.1_1_8:120865268-120868035:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.71563720703125	2	443.71563	885.416708	0.25852	0.00011471	0.094516	4.1938E-05	0.35303	0.00015665	443.71552306084135	31.882	2.14	31.924	31.347	33.487	0.042364					125	76	3	0	0	0	0.21902	1	5910	5910		20.871	1.4322	1	8664300			52305	4019	29872	29873	64102	64102					-0.03058382351639466
VHCWAASL	8	Unmodified	_VHCWAASL_					0	0	0			REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF	REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.7156066894531	2	443.71563	885.416708	0.18931	8.3998E-05	0.13756	6.1039E-05	0.32687	0.00014504	443.7155735952803	31.744	1.4712	31.744	31.394	32.865	0					103	52	3	0	0	0	0.33916	1	5916	5916		26.341	4.5946	1	6615500	+		52306	22336	29873	29874	64103	64103					-0.030583823516622033
VHCWAASL	8	Unmodified	_VHCWAASL_					0	0	0			REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF	REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.71563720703125	2	443.71563	885.416708	0.25852	0.00011471	0.094516	4.1938E-05	0.35303	0.00015665	443.71552306084135	31.882	2.14	31.924	31.347	33.487	0.042364					125	76	3	0	0	0	0.33916	1	6004	6004		26.341	4.5946	1	8664300	+		52307	22336	29873	29874	64104	64104					-0.030583823516622033
VHDRYKAARI	10	Unmodified	_VHDRYKAARI_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.536376953125	3	410.235156	1227.68364	-0.42199	-0.00017311	-1.6622	-0.00068191	-2.0842	-0.00085502	410.2343818927246	28.156	0.65701	28.156	27.789	28.446	0					41	22	3	0	0	0	0.31651	1	4895	4895		11.518	7.9308	1	105740	+		52308	18836	29874	29875	64105	64105					0.0789041913139954
VHDRYKAARI	10	Unmodified	_VHDRYKAARI_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5364685058594	3	410.235156	1227.68364	-0.17767	-7.2886E-05	-2.2355	-0.00091709	-2.4132	-0.00098998	410.2342358760107	28.192	0.72911	28.187	27.604	28.333	-0.0042572					44	25	3	0	0	0	0.31867	1	4895	4895		5.0475	0	1	147970	+		52309	18836	29874	29875	64106	64106					0.0789041913139954
VHDRYKAARI	10	Unmodified	_VHDRYKAARI_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5364685058594	3	410.235156	1227.68364	-0.28526	-0.00011703	-1.9785	-0.00081165	-2.2638	-0.00092867	410.23435877227877	28.145	0.58224	28.145	27.739	28.322	0.0004673					44	20	3	0	0	0	0.31651	1	4887	4887		7.9454	3.7559	1	118340	+		52310	18836	29874	29875	64107	64107					0.0789041913139954
VHDTYDWVY	9	Unmodified	_VHDTYDWVY_					0	0	0			REV__nc|ENSG00000151092|Q96IV0-3|NGLY1	REV__nc|ENSG00000151092|Q96IV0-3|NGLY1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.8023071289062	2	599.264196	1196.51384	0.66233	0.00039691	-3.2271	-0.0019339	-2.5648	-0.001537	599.2625326021072	72.453	0.5433	72.51	72.273	72.816	0.056572					35	19	3	0	0	0	0.24311	1	18478	18478		16.942	10.219	1	157090	+		52311	16525	29875	29876	64108	64108					-0.07655741661665161
VHDVLDLYL	9	Unmodified	_VHDVLDLYL_					0	0	0		ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3091430664062	2	543.795132	1085.57571	0.92405	0.0005025	0.10577	5.7519E-05	1.0298	0.00056001	544.2967635304447	50.775	0.3808	50.821	50.656	51.037	0.046577					18	13	2	0	0	0	0.24913	1	11858	11858		12.532	0	1	128610			52312	5238	29876	29877	64109	64109					0.036346097574551095
VHFGKKDF	8	Unmodified	_VHFGKKDF_					0	0	0			REV__nc|ENSG00000073737|Q9BPW9-4|DHRS9	REV__nc|ENSG00000073737|Q9BPW9-4|DHRS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.26397705078125	2	489.263802	976.513051	0.37799	0.00018494	-0.19237	-9.4119E-05	0.18562	9.0818E-05	489.26386784368503	52.751	1.6469	52.751	52.267	53.914	0					183	60	5	0	0	0	0.29634	1	12466	12466		34.102	7.2188	1	24440000	+		52313	22897	29877	29878	64110	64110					0.023855084799379256
VHFGKKDF	8	Unmodified	_VHFGKKDF_					0	0	0			REV__nc|ENSG00000073737|Q9BPW9-4|DHRS9	REV__nc|ENSG00000073737|Q9BPW9-4|DHRS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2640075683594	2	489.263802	976.513051	0.31309	0.00015318	-0.026242	-1.2839E-05	0.28685	0.00014034	489.2639170266812	52.862	1.8545	52.861	52.245	54.1	-0.001236					209	68	6	0	0	0	0.29634	1	12511	12511		34.102	3.8776	1	22454000	+		52314	22897	29877	29878	64111	64111					0.023855084799379256
VHFLSAGLP	9	Unmodified	_VHFLSAGLP_					0	0	0		ENST00000257177.8_1_1:52889499-52889643:-|nuORF;ENST00000527941.5_3_1:52875172-52889607:-|nuORF	ENST00000257177.8_1_1:52889499-52889643:-|nuORF	ENST00000257177.8_1_1:52889499-52889643:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.256103515625	2	470.766178	939.517802	0.32404	0.00015255	-3.701	-0.0017423	-3.3769	-0.0015897	470.76381860756265	32.362	0.60058	32.362	32.091	32.692	0					33	21	2	0	0	0	0.23783	1	6116	6116		18.135	0	1	136120			52315	8935	29878	29879	64112	64112					0.04562392622710831
VHFMCLSDF	9	Unmodified	_VHFMCLSDF_					0	0	0		ENST00000525141.1_11:93211864-93211963:-|nuORF	ENST00000525141.1_11:93211864-93211963:-|nuORF	ENST00000525141.1_11:93211864-93211963:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7715454101562	2	549.740988	1097.46742	0.64667	0.0003555	-0.64451	-0.00035431	0.002166	1.1907E-06	549.7412250686943	83.224	1.0612	83.224	82.62	83.681	0					69	39	3	0	0	0	0.18943	1	21809	21809		23.148	2.6948	1	449260			52316	11533	29879	29880	64113	64113					-0.07741221088963357
VHFPLWCLI	9	Unmodified	_VHFPLWCLI_					0	0	0			REV__ENSG00000121853|ENST00000241256|GHSR	REV__ENSG00000121853|ENST00000241256|GHSR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8212890625	2	564.307155	1126.59976	0.24579	0.0001387	1.5371	0.00086739	1.7829	0.0010061	564.3081450266134	81.579	0.45914	81.579	81.338	81.797	0					29	19	2	0	0	0	0.25291	1	21314	21314		9.3474	0	1	208510	+		52317	15132	29880	29881	64114	64114					0.04152171710143193
VHFSLSLK	8	Unmodified	_VHFSLSLK_					0	0	0		ENST00000448359.1_1_2:111134476-111134518:-|nuORF	ENST00000448359.1_1_2:111134476-111134518:-|nuORF	ENST00000448359.1_1_2:111134476-111134518:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.78851318359375	2	465.774003	929.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.506	1	50.551	50.051	51.051	0.044891								0	0	0	0.34492	1	11716	11716		16.942	0	1				52318	10616	29881	29882	64115	64115					0.06586679139763874
VHGAPGVW	8	Unmodified	_VHGAPGVW_					0	0	0			REV__ENST00000533050.5_2_11:126081309-126081687:+|nuORF	REV__ENST00000533050.5_2_11:126081309-126081687:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2240295410156	2	411.716488	821.418422	-0.034341	-1.4139E-05	0.087487	3.602E-05	0.053146	2.1881E-05	411.716446965612	31.944	0.77692	31.944	31.502	32.279	0					36	27	2	0	0	0	0.34297	1	6025	6025		6.3541	0	1	275790	+		52319	22039	29882	29883	64116	64116					0.0005699472861806498
VHGAPGVW	8	Unmodified	_VHGAPGVW_					0	0	0			REV__ENST00000533050.5_2_11:126081309-126081687:+|nuORF	REV__ENST00000533050.5_2_11:126081309-126081687:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	411.716488	821.418422	0.36141	0.0001488	-0.69306	-0.00028534	-0.33165	-0.00013655	411.7163121957639	31.911	0.47971	31.953	31.768	32.247	0.042364	0.0043054	-0.00053027	NaN	6.3541	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213470	+		52320	22039	29882	29883							0.0005699472861806498
VHGERTPGP	9	Unmodified	_VHGERTPGP_					0	0	0		ENST00000472036.1_1_10:101648624-101648672:-|nuORF	ENST00000472036.1_1_10:101648624-101648672:-|nuORF	ENST00000472036.1_1_10:101648624-101648672:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7563781738281	2	475.246141	948.477728	-0.017443	-8.2899E-06	-1.5132	-0.00071914	-1.5306	-0.00072743	475.2453543171331	14.678	0.16563	14.574	14.516	14.681	-0.10466					7	5	2	0	0	0	0.33018	1	799	799		4.3292	1.44	1	16059			52321	10886	29883	29884	64117	64117					0.0014284595213212015
VHGLLHLS	8	Unmodified	_VHGLLHLS_					0	0	0			REV__ENST00000448373.6_1_19:37068211-37068289:+|nuORF	REV__ENST00000448373.6_1_19:37068211-37068289:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2729797363281	2	438.25852	874.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.895	1	98.946	98.446	99.446	0.050888								0	0	0	0.36961	1	26474	26474		5.7604	0	1		+		52322	21094	29884	29885	64118	64118					0.06021525825531171
VHGWPGSF	8	Unmodified	_VHGWPGSF_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.715576171875	2	443.713945	885.413337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.893	1	31.893	31.393	32.393	0								0	0	0	0.26566	1	6014	6014		34.187	7.8461	1				52323	4551	29885	29886	64119	64119					-0.03395309134009494
VHGWPGSF	8	Unmodified	_VHGWPGSF_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.7156066894531	2	443.713945	885.413337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.058	1	32.058	31.558	32.558	0								0	0	0	0.20846	1	6065	6065		42.968	8.7807	1				52324	4551	29885	29886	64120	64120					-0.03395309134009494
VHGWPGSF	8	Unmodified	_VHGWPGSF_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.7156066894531	2	443.713945	885.413337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.221	1	32.221	31.721	32.721	0								0	0	0	0.20846	1	6115	6115		42.968	8.7807	1				52325	4551	29885	29886	64121	64121					-0.03395309134009494
VHHSQPQPFAG	11	Unmodified	_VHHSQPQPFAG_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.2984008789062	2	602.796529	1203.5785	0.57158	0.00034455	4.0523	0.0024427	4.6239	0.0027873	602.7989481122	82.545	0.37081	82.618	82.473	82.844	0.073097					24	14	2	0	0	0	0.33175	1	21573	21573		4.897	3.4151	1	118000			52326	3910	29886	29887	64122	64122					-0.0151412206500936
VHKHESTIV	9	Unmodified	_VHKHESTIV_					0	0	0		ENSG00000162641|ENST00000370001|AKNAD1;nc|ENSG00000162641|Q5T1N1-3|AKNAD1;nc|ENSG00000162641|Q5T1N1-4|AKNAD1;ENST00000472781.2_1_1:109380150-109385886:-|nuORF	ENSG00000162641|ENST00000370001|AKNAD1	ENSG00000162641|ENST00000370001|AKNAD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7747192382812	2	525.290548	1048.56654	0.27397	0.00014391	-1.2204	-0.00064107	-0.94643	-0.00049715	525.2898562789193	17.107	0.36458	16.989	16.772	17.137	-0.11739					15	12	2	0	0	0	0.25811	1	1524	1524		5.2307	1.6342	1	24796			52327	5592	29887	29888	64123	64123					0.044202611917853574
VHKTTRDK	8	Unmodified	_VHKTTRDK_					0	0	0		ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.7825622558594	2	492.78289	983.551228	0.056153	2.7671E-05	-0.18677	-9.2038E-05	-0.13062	-6.4367E-05	492.78284474123745	14.091	0.52092	14.091	13.902	14.423	0					31	17	3	0	0	0	0.46155	1	652	652		1.8442	0	1	144280			52328	7051	29888	29889	64124	64124					0.05879394394617066
VHKVSAGHTPL	11	Unmodified	_VHKVSAGHTPL_					0	0	0		ENSG00000205678|ENST00000381210|TECRL	ENSG00000205678|ENST00000381210|TECRL	ENSG00000205678|ENST00000381210|TECRL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.3239135742188	2	573.324922	1144.63529	-0.17119	-9.8146E-05	-0.55153	-0.00031621	-0.72272	-0.00041435	573.324683131359	101.35	1.269	101.35	100.8	102.07	0					264	173	2	0	0	0	0.46277	1	27047	27047		2.9952	0.93549	1	217570			52329	8299	29889	29890	64125	64125					0.06875925491522139
VHLAYLRA	8	Unmodified	_VHLAYLRA_					0	0	0		ABCC6|p.R987Lfs*25|1|0.2|ENSG00000091262|chr16:16169681-16169681|C/-|frameshift_variant;ABCC6|p.R1418Gfs*46|1|0.12|ENSG00000091262|chr16:16150729-16150729|G/-|frameshift_variant;ENSG00000091262|ENST00000205557|ABCC6;ENST00000456970.6_1_16:16251574-16267200:-|nuORF	ABCC6|p.R987Lfs*25|1|0.2|ENSG00000091262|chr16:16169681-16169681|C/-|frameshift_variant	ABCC6|p.R987Lfs*25|1|0.2|ENSG00000091262|chr16:16169681-16169681|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.7795715332031	2	471.779619	941.544686	-0.25244	-0.0001191	0.41491	0.00019575	0.16246	7.6648E-05	471.77959955025824	13.105	0.58354	13.105	12.925	13.509	0					29	20	2	0	0	0	0.45015	1	331	331		5.7604	1.0044	1	104430			52330	2	29890	29891	64126	64126					0.07157501233893981
VHLCWSAA	8	Unmodified	_VHLCWSAA_					0	0	0			REV__ENSG00000105255|ENST00000221856|FSD1	REV__ENSG00000105255|ENST00000221856|FSD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.7156982421875	2	443.71563	885.416708	0.25852	0.00011471	0.094516	4.1938E-05	0.35303	0.00015665	443.71552306084135	31.882	2.14	31.924	31.347	33.487	0.042364					125	76	3	0	0	0	0.33916	2	5961	5961;6047		26.341	4.5946	1	8664300	+		52331	14444	29891	29892	64127;64128	64127					-0.030583823516622033
VHLCWSAA	8	Unmodified	_VHLCWSAA_					0	0	0			REV__ENSG00000105255|ENST00000221856|FSD1	REV__ENSG00000105255|ENST00000221856|FSD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.7156677246094	2	443.71563	885.416708	0.25953	0.00011516	0.053085	2.3555E-05	0.31261	0.00013871	443.7155588136802	31.578	0.43886	31.619	31.334	31.772	0.040991					42	15	3	0	0	0	0.33916	2	5885	5885;5927		26.341	0	1	7670800	+		52332	14444	29891	29892	64129;64130	64129					-0.030583823516622033
VHLKKSGYVF	10	Unmodified	_VHLKKSGYVF_					0	0	0		ENSG00000164659|ENST00000450689|ELAPOR2;nc|ENSG00000164659|A8MWY0-3|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3427124023438	2	589.340041	1176.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.796	1	94.879	94.379	95.379	0.082779								0	0	0	0.36441	1	25297	25297		8.7454	3.0136	1				52333	5862	29892	29893	64131	64131					0.0842628415668969
VHLKKSGYVF	10	Unmodified	_VHLKKSGYVF_					0	0	0		ENSG00000164659|ENST00000450689|ELAPOR2;nc|ENSG00000164659|A8MWY0-3|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	ENSG00000164659|ENST00000450689|ELAPOR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3433227539062	2	589.340041	1176.66553	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.914	1	94.997	94.497	95.497	0.082779								0	0	0	0.3726	1	25333	25333		5.2969	1.7004	1				52334	5862	29892	29893	64132	64132					0.0842628415668969
VHLKMVWKLL	10	Unmodified	_VHLKMVWKLL_					0	0	0		ENST00000342992.10_3_2:179481608-179481719:-|nuORF	ENST00000342992.10_3_2:179481608-179481719:-|nuORF	ENST00000342992.10_3_2:179481608-179481719:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.57489013671875	3	422.930016	1265.76822	-0.08073	-3.4143E-05	-0.38478	-0.00016274	-0.46551	-0.00019688	422.9298209725608	19.585	0.8335	19.469	19.177	20.01	-0.11592					60	28	3	0	0	0	0.31911	1	2208	2208		6.6304	0.84694	1	97773			52335	9536	29893	29894	64133	64133					0.14596653623812017
VHLLVLSGFL	10	Unmodified	_VHLLVLSGFL_					0	0	0		chr19:11345415-11345559|398|85.25|0.0|23.02|-|2|TMEM205,None|1	chr19:11345415-11345559|398|85.25|0.0|23.02|-|2|TMEM205,None|1	chr19:11345415-11345559|398|85.25|0.0|23.02|-|2|TMEM205,None|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.315185546875	2	549.33951	1096.66447	0.61427	0.00033744	-1.2759	-0.00070088	-0.66159	-0.00036344	549.3392138204367	63.622	0.31996	63.718	63.477	63.797	0.095722					18	10	2	0	0	0	0.30586	1	15762	15762		19.257	9.8739	1	126380			52336	142	29894	29895	64134	64134					0.12000069787814027
VHLVPGNPPS	10	Unmodified	_VHLVPGNPPS_					0	0	0		ENSG00000166959|ENST00000300226|MS4A8	ENSG00000166959|ENST00000300226|MS4A8	ENSG00000166959|ENST00000300226|MS4A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.79046630859375	2	508.779816	1015.54508	0.18682	9.5051E-05	0.43652	0.00022209	0.62334	0.00031714	508.7801039783915	22.322	0.54351	22.322	22.105	22.649	0					22	18	2	0	0	0	0.36786	1	3185	3185		9.3831	0	1	93565			52337	6134	29895	29896	64135	64135					0.03792876163083747
VHLVPGNPPS	10	Unmodified	_VHLVPGNPPS_					0	0	0		ENSG00000166959|ENST00000300226|MS4A8	ENSG00000166959|ENST00000300226|MS4A8	ENSG00000166959|ENST00000300226|MS4A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7906799316406	2	508.779816	1015.54508	0.057015	2.9008E-05	0.82394	0.0004192	0.88096	0.00044821	508.78027844369984	22.414	0.57925	22.369	22.156	22.735	-0.044867					29	19	3	0	0	0	0.3641	1	3193	3193		10.074	2.1638	1	47596			52338	6134	29895	29896	64136	64136					0.03792876163083747
VHLWYVAA	8	Unmodified	_VHLWYVAA_					0	0	0			REV__ENST00000399932.7_1_16:315646-315760:+|nuORF	REV__ENST00000399932.7_1_16:315646-315760:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.75921630859375	2	479.760895	957.507237	-0.048025	-2.3041E-05	-0.72627	-0.00034844	-0.7743	-0.00037148	479.7604610258278	15.603	0.711	15.603	15.382	16.093	0					49	24	3	0	0	0	0.34434	1	1172	1172		0.79363	0	1	104280	+		52339	20697	29896	29897	64137	64137					0.026784099682686247
VHMYLLIF	8	Unmodified	_VHMYLLIF_					0	0	0		ENSG00000144848|ENST00000283290|ATG3;ENST00000494571.1_1_3:112251548-112253195:-|nuORF	ENSG00000144848|ENST00000283290|ATG3	ENSG00000144848|ENST00000283290|ATG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3243408203125	2	518.288431	1034.56231	-0.87176	-0.00045182	1.9037	0.00098666	1.0319	0.00053483	518.2886545270993	35.047	0.63473	35.047	34.805	35.439	0					33	22	3	0	0	0	0.31651	1	6919	6919		17.087	0	1	242000			52340	4618	29897	29898	64138	64138					0.046410804445486065
VHNWSGQR	8	Unmodified	_VHNWSGQR_					0	0	0			REV__ENST00000478824.1_1_17:46783758-46784010:+|nuORF	REV__ENST00000478824.1_1_17:46783758-46784010:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8010559082031	2	492.243932	982.473312	0.396	0.00019493	-2.1687	-0.0010675	-1.7727	-0.0008726	492.2416482700686	29.505	0.14285	29.517	29.389	29.532	0.012266					6	4	2	0	0	0	0.34319	1	5254	5254		2.5775	0.27475	1	51443	+		52341	21459	29898	29899	64139	64139					-0.018626184707613902
VHPLKKYPV	9	Unmodified	_VHPLKKYPV_					0	0	0		ENSG00000105855|ENST00000222573|ITGB8;nc|ENSG00000105855|P26012-2|ITGB8;ENST00000477859.1_1_7:20406589-20418951:+|nuORF	ENSG00000105855|ENST00000222573|ITGB8	ENSG00000105855|ENST00000222573|ITGB8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.263916015625	2	540.831852	1079.64915	0.26726	0.00014454	1.397	0.00075555	1.6643	0.00090009	540.8319301743926	100.24	0.29213	100.28	100.21	100.5	0.038994					49	38	2	0	0	0	0.25938	1	26785	26785		4.3292	2.0265	1	87296			52342	2030	29899	29900	64140	64140					0.11251202990592901
VHPLKKYPV	9	Unmodified	_VHPLKKYPV_					0	0	0		ENSG00000105855|ENST00000222573|ITGB8;nc|ENSG00000105855|P26012-2|ITGB8;ENST00000477859.1_1_7:20406589-20418951:+|nuORF	ENSG00000105855|ENST00000222573|ITGB8	ENSG00000105855|ENST00000222573|ITGB8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	540.831852	1079.64915	0.49345	0.00026688	0.86997	0.00047051	1.3634	0.00073738	540.8317030868569	100.28	0.13927	100.28	100.23	100.37	-0.006897	-0.0028224	-0.00032156	NaN	4.3292	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94182			52343	2030	29899	29900							0.11251202990592901
VHPMRRNVPA	10	Unmodified	_VHPMRRNVPA_					0	0	0			REV__ENSG00000174373|ENST00000680220|RALGAPA1	REV__ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.8245849609375	2	588.824566	1175.63458	0.58919	0.00034693	-0.38751	-0.00022817	0.20168	0.00011876	588.8242006322487	20.781	0.64387	20.728	20.418	21.062	-0.052912					41	22	2	0	0	0	0.40992	1	2643	2643		1.6526	0.17072	1	124760	+		52344	17829	29900	29901	64141	64141					0.05378807570832578
VHPMRRNVPA	10	Unmodified	_VHPMRRNVPA_					0	0	0			REV__ENSG00000174373|ENST00000680220|RALGAPA1	REV__ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	588.824566	1175.63458	0.58919	0.00034693	-0.38751	-0.00022817	0.20168	0.00011876	588.8242006322487	20.781	0.64387	20.728	20.418	21.062	-0.052912	-0.020029	-0.00016037	NaN	1.6526	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124760	+		52345	17829	29900	29901							0.05378807570832578
VHPPHYFF	8	Unmodified	_VHPPHYFF_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7955932617188	2	522.25852	1042.50249	0.2371	0.00012383	0.11915	6.2227E-05	0.35625	0.00018605	522.258400098939	46.339	0.5129	46.339	45.945	46.458	0					24	18	2	0	0	0	0.33618	1	10465	10465		17.087	10.363	1	261290			52346	2311	29901	29902	64142	64142					-0.017064741744889034
VHPPHYFF	8	Unmodified	_VHPPHYFF_					0	0	0		nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENSG00000110429|ENST00000265651|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	nc|ENSG00000110429|Q9UK99-3|FBXO3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.25852	1042.50249	0.50433	0.00026339	-1.0069	-0.00052586	-0.50256	-0.00026247	522.258195340683	46.089	0.46446	46.154	45.872	46.336	0.065048	-0.092702	-0.00082041	NaN	24.21	26	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197480			52347	2311	29901	29902							-0.017064741744889034
VHPPPTTTY	9	Unmodified	_VHPPPTTTY_					0	0	0		nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT	nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-6|PIGT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7587890625	2	506.758549	1011.50255	0.4911	0.00024887	-0.72374	-0.00036676	-0.23264	-0.00011789	506.7584287477294	29.198	1.3003	29.198	28.699	29.999	0					84	46	3	0	0	0	0.044952	2	5194	5194;5243		54.774	18.729	1	295180			52348	3133	29902	29903	64143;64144	64143					-0.0027451896517050045
VHPPPTTTY	9	Unmodified	_VHPPPTTTY_					0	0	0		nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT	nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-6|PIGT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.75927734375	2	506.758549	1011.50255	0.3058	0.00015496	-0.51922	-0.00026312	-0.21343	-0.00010816	506.75858614858515	29.137	1.0888	29.149	28.769	29.858	0.012266					85	37	3	0	0	0	0.062246	2	5148	5148;5199		48.346	12.302	1	301490			52349	3133	29902	29903	64145;64146	64145					-0.0027451896517050045
VHPPPTTTY	9	Unmodified	_VHPPPTTTY_					0	0	0		nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT	nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-6|PIGT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7584533691406	2	506.758549	1011.50255	0.1454	7.3685E-05	-0.44397	-0.00022499	-0.29857	-0.0001513	506.7586289070765	29.213	1.0972	29.226	28.648	29.745	0.013474					81	38	3	0	0	0	0.062246	2	5192	5145;5192		48.346	12.302	1	288950			52350	3133	29902	29903	64147;64148	64148					-0.0027451896517050045
VHPQFYII	8	Unmodified	_VHPQFYII_					0	0	0		nc|ENSG00000095917|Q9BZJ3-2|TPSD1;ENSG00000095917|ENST00000211076|TPSD1	nc|ENSG00000095917|Q9BZJ3-2|TPSD1	nc|ENSG00000095917|Q9BZJ3-2|TPSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2896728515625	2	508.781828	1015.5491	0.15596	7.9349E-05	-3.0755	-0.0015648	-2.9195	-0.0014854	508.7802918437477	22.446	0.49191	22.358	22.166	22.658	-0.08761					25	17	2	0	0	0	0.34185	1	3132	3132		10.183	0	1	57241			52351	1459	29903	29904	64149	64149					0.04194965656813565
VHQRNNMNF	9	Unmodified	_VHQRNNMNF_					0	0	0			REV__SNX10|p.S135Lfs*17|1|0.33|ENSG00000086300|chr7:26371910-26371910|T/-|frameshift_variant	REV__SNX10|p.S135Lfs*17|1|0.33|ENSG00000086300|chr7:26371910-26371910|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.2879638671875	2	580.274906	1158.53526	0.63485	0.00036839	0.80215	0.00046547	1.437	0.00083385	580.2752656055585	74.633	0.60732	74.633	74.405	75.012	0					58	21	4	0	0	0	0.28128	1	19245	19245		11.64	11.64	1	984780	+		52352	13218	29904	29905	64150	64150					-0.037666351139250764
VHRHRFARV	9	Unmodified	_VHRHRFARV_					0	0	0			REV__ENST00000258962.4_1_17:56084436-56084706:-|nuORF	REV__ENST00000258962.4_1_17:56084436-56084706:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3423461914062	2	589.344315	1176.67408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.87	1	114.86	114.36	115.36	-0.019096								0	0	0	0.2672	1	29808	29808		0.52476	0	1		+		52353	19570	29905	29906	64151	64151					0.09280695636539349
VHRHRFARV	9	Unmodified	_VHRHRFARV_					0	0	0			REV__ENST00000258962.4_1_17:56084436-56084706:-|nuORF	REV__ENST00000258962.4_1_17:56084436-56084706:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.344482421875	2	589.344315	1176.67408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.25	1	115.27	114.77	115.77	0.018738								0	0	0	0.2672	1	29944	29944		0.52476	0.066424	1		+		52354	19570	29905	29906	64152	64152					0.09280695636539349
VHRIKSMF	8	Unmodified	_VHRIKSMF_					0	0	0		ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	ENSG00000108819|ENST00000612501|PPP1R9B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.80352783203125	2	509.286754	1016.55896	0.24424	0.00012439	-3.9682	-0.0020209	-3.7239	-0.0018965	509.2844563845978	37.786	1.0423	37.884	37.335	38.378	0.097527					54	37	2	0	0	0	0.34046	1	7958	7958		9.3474	0	1	300800			52355	2215	29906	29907	64153	64153					0.051338303905367866
VHRPRLRP	8	Unmodified	_VHRPRLRP_					0	0	0		ENST00000293190.9_1_17:72838445-72839279:-|nuORF	ENST00000293190.9_1_17:72838445-72839279:-|nuORF	ENST00000293190.9_1_17:72838445-72839279:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2777709960938	2	515.822684	1029.63082	-0.1436	-7.4072E-05	-0.89729	-0.00046284	-1.0409	-0.00053692	515.8216450955032	13.85	0.17313	13.784	13.716	13.889	-0.066068					7	5	2	0	0	0	0.34434	1	542	542		0.79363	0	1	14839			52356	9165	29907	29908	64154	64154					0.1171850585926677
VHRQKLLEK	9	Unmodified	_VHRQKLLEK_					0	0	0		ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1;ENST00000461624.1_1_1:158592769-158604434:-|nuORF	ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.37158203125	2	575.85639	1149.69823	0.27194	0.0001566	0.10391	5.9835E-05	0.37585	0.00021644	575.8562814011402	35.443	0.55525	35.519	35.261	35.816	0.075306					32	19	2	0	0	0	0.3208	1	7130	7130		5.7319	0	1	513880			52357	5700	29908	29909	64155	64155					0.1293649127956087
VHRQKLLEK	9	Unmodified	_VHRQKLLEK_					0	0	0		ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1;ENST00000461624.1_1_1:158592769-158604434:-|nuORF	ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3711547851562	2	575.85639	1149.69823	-0.16823	-9.6878E-05	0.62987	0.00036272	0.46164	0.00026584	575.8566413395669	35.478	0.55526	35.564	35.263	35.818	0.08625					31	19	2	0	0	0	0.3208	1	7135	7135		5.7319	0	1	495460			52358	5700	29908	29909	64156	64156					0.1293649127956087
VHRWEEEPF	9	Unmodified	_VHRWEEEPF_					0	0	0			REV__ENST00000473646.5_1_7:99214596-99221826:+|nuORF	REV__ENST00000473646.5_1_7:99214596-99221826:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.53143310546875	3	410.196367	1227.56727	0.13315	5.4619E-05	4.1015	0.0016824	4.2347	0.001737	410.5314475458163	29.22	0.37258	29.22	28.952	29.324	0					28	13	3	0	0	0	0.24848	1	5217	5217		5.7319	0	1	102260	+		52359	18703	29909	29910	64157	64157					-0.03740944159153514
VHSEEALFLL	10	Unmodified	_VHSEEALFLL_					0	0	0		ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000525495.6_2_17:45219385-45266538:-|nuORF	ENSG00000004897|ENST00000066544|CDC27	ENSG00000004897|ENST00000066544|CDC27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.713134765625	2	579.313689	1156.61282	0.28128	0.00016295	-0.5256	-0.00030449	-0.24432	-0.00014154	579.3135162069848	70.701	0.33495	70.701	70.512	70.847	0					19	11	2	0	0	0	0.31165	1	17918	17918		10.824	0	1	144800			52360	319	29910	29911	64158	64158					0.040782813032365084
VHSEYDWY	8	Unmodified	_VHSEYDWY_					0	0	0			REV__ENSG00000254598|ENST00000528848|CSNK2A3	REV__ENSG00000254598|ENST00000528848|CSNK2A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3050537109375	2	549.729989	1097.44543	0.25001	0.00013744	-3.2523	-0.0017879	-3.0023	-0.0016504	549.7263776127674	67.038	0.47722	67.022	66.814	67.292	-0.016296					26	16	2	0	0	0	0.32778	1	16743	16743		14.582	2.0501	1	218100	+		52361	14259	29911	29912	64159	64159					-0.09939986241511178
VHSNDHVLVF	10	Unmodified	_VHSNDHVLVF_					0	0	0			REV__ENSG00000141449|ENST00000424526|GREB1L	REV__ENSG00000141449|ENST00000424526|GREB1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.8154907226562	2	583.80128	1165.58801	0.18963	0.00011071	0.2962	0.00017292	0.48584	0.00028363	583.8013704071411	33.026	0.5294	33.081	32.84	33.369	0.055309					43	18	3	0	0	0	0.31691	1	6339	6339		9.3831	0	1	403900	+		52362	16075	29912	29913	64160	64160					0.011836462205337739
VHSSLLTI	8	Unmodified	_VHSSLLTI_					0	0	0		nc|ENSG00000161270|O60500-2|NPHS1;ENSG00000161270|ENST00000378910|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	nc|ENSG00000161270|O60500-2|NPHS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2512512207031	2	435.258185	868.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.983	1	71.956	71.456	72.456	-0.027275								0	0	0	0.29147	1	18313	18313		30.225	0	1				52363	5512	29913	29914	64161	64161					0.06230686385822537
VHSSLSAGEK	10	Unmodified	_VHSSLSAGEK_					0	0	0		ENSG00000105122|ENST00000343625|RASAL3;nc|ENSG00000105122|Q86YV0-2|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.27978515625	2	507.764363	1013.51417	-0.011892	-6.0384E-06	-0.61463	-0.00031209	-0.62652	-0.00031812	507.76420302645295	14.495	0.52038	14.39	14.131	14.651	-0.10466					37	17	3	0	0	0	0.35231	1	776	776		12.241	0.60036	1	153000			52364	1946	29914	29915	64162	64162					0.00795678058204885
VHSSLSAGEK	10	Unmodified	_VHSSLSAGEK_					0	0	0		ENSG00000105122|ENST00000343625|RASAL3;nc|ENSG00000105122|Q86YV0-2|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2800598144531	2	507.764363	1013.51417	-0.041987	-2.1319E-05	-0.42493	-0.00021576	-0.46692	-0.00023708	507.7641676471281	14.479	0.38496	14.413	14.231	14.616	-0.066068					34	13	3	0	0	0	0.33104	1	726	726		16.149	4.5088	1	167080			52365	1946	29914	29915	64163	64163					0.00795678058204885
VHTAEIITL	9	Unmodified	_VHTAEIITL_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7904357910156	2	498.78985	995.565146	0.70803	0.00035316	-0.11983	-5.9771E-05	0.5882	0.00029339	498.7900302665531	77.519	0.99028	77.575	77.233	78.223	0.055412					60	35	3	0	0	0	0.044952	1	20027	20027		54.774	0	1	218690	+		52366	16347	29915	29916	64164	64164					0.06718627103043673
VHTFDRGCEGL	11	Unmodified	_VHTFDRGCEGL_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2240295410156	3	411.860878	1232.56081	-0.0054354	-2.2386E-06	-0.033067	-1.3619E-05	-0.038502	-1.5858E-05	411.86093896161924	31.938	0.15265	31.938	31.8	31.953	0					6	4	2	0	0	0	0.32843	1	6025	6025		5.0475	0.3316	1	181730	+		52367	15255	29916	29917	64165	64165					-0.04617205382191969
VHTGSLLL	8	Unmodified	_VHTGSLLL_					0	0	0			REV__nc|ENSG00000070961|P20020-6|ATP2B1	REV__nc|ENSG00000070961|P20020-6|ATP2B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.25274658203125	2	420.252903	838.491253	0.093112	3.913E-05	-0.27723	-0.00011651	-0.18412	-7.7377E-05	420.25265134020407	57.715	0.94972	57.8	57.518	58.468	0.085617					88	34	4	0	0	0	0.2157	1	13915	13915		40.449	0	1	2251500	+		52368	22895	29917	29918	64166	64166					0.06554703731376321
VHVKQKLY	8	Unmodified	_VHVKQKLY_					0	0	0		ENSG00000205090|ENST00000378733|TMEM240	ENSG00000205090|ENST00000378733|TMEM240	ENSG00000205090|ENST00000378733|TMEM240	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7884521484375	2	507.808377	1013.6022	-0.072163	-3.6645E-05	-3.4502	-0.001752	-3.5223	-0.0017887	507.8060325926183	14.057	0.17829	13.952	13.845	14.023	-0.10466					14	5	4	0	0	0	0.3439	1	582	582		2.8892	2.1988	1	39365			52369	8272	29918	29919	64167	64167					0.09594343439459863
VHVRDAVL	8	Unmodified	_VHVRDAVL_					0	0	0		ENST00000316586.8_1_2:242434694-242435003:-|nuORF	ENST00000316586.8_1_2:242434694-242435003:-|nuORF	ENST00000316586.8_1_2:242434694-242435003:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2669372558594	2	454.769252	907.52395	0.23603	0.00010734	-1.2226	-0.000556	-0.98656	-0.00044866	454.76872901785754	86.971	0.57782	87.058	86.81	87.387	0.087097					31	24	2	0	0	0	0.34218	1	22884	22884		9.3474	1.4373	1	297330			52370	9357	29919	29920	64168	64168					0.06648910854232781
VHVTELKHT	9	Unmodified	_VHVTELKHT_					0	0	0		nc|ENSG00000178803|P86434|ADORA2A-AS1	nc|ENSG00000178803|P86434|ADORA2A-AS1	nc|ENSG00000178803|P86434|ADORA2A-AS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.81396484375	2	532.298373	1062.58219	0.16547	8.8079E-05	0.056113	2.9869E-05	0.22158	0.00011795	532.8016723874983	17.936	0.45468	17.819	17.663	18.117	-0.11739					34	15	4	0	0	0	0.32415	1	1805	1805		5.2307	0	1	75906			52371	12860	29920	29921	64169	64169					0.05340547708851773
VHVTELKHT	9	Unmodified	_VHVTELKHT_					0	0	0		nc|ENSG00000178803|P86434|ADORA2A-AS1	nc|ENSG00000178803|P86434|ADORA2A-AS1	nc|ENSG00000178803|P86434|ADORA2A-AS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3350219726562	2	532.298373	1062.58219	0.29198	0.00015542	-1.0132	-0.00053932	-0.72121	-0.0003839	532.294489149124	17.968	0.43291	17.907	17.736	18.169	-0.060431					39	15	3	0	0	0	0.25811	1	1803	1803		5.2307	0	1	83834			52372	12860	29920	29921	64170	64170					0.05340547708851773
VHVTERPAR	9	Unmodified	_VHVTERPAR_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;ENST00000506603.5_1_5:79058805-79095436:+|nuORF	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.8145141601562	2	532.801614	1063.58868	0.41889	0.00022319	-0.063996	-3.4097E-05	0.3549	0.00018909	532.8016545138124	17.793	0.36292	17.793	17.628	17.991	0					18	11	2	0	0	0	0.27532	1	1770	1770		12.532	0	1	50526			52373	5828	29921	29922	64171	64171					0.059424856602163345
VHWQTLLF	8	Unmodified	_VHWQTLLF_					0	0	0		ENST00000343823.10_2_8:37986318-37986411:+|nuORF	ENST00000343823.10_2_8:37986318-37986411:+|nuORF	ENST00000343823.10_2_8:37986318-37986411:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.7388305664062	2	522.287277	1042.56	0.55817	0.00029153	-0.49823	-0.00026022	0.059944	3.1308E-05	522.2871195090479	45.981	0.63377	46.046	45.675	46.309	0.065048					35	22	2	0	0	0	0.34218	1	10234	10234		9.3474	0	1	618540			52374	9548	29922	29923	64172	64172					0.04042368031082333
VHYIDFNK	8	Unmodified	_VHYIDFNK_					0	0	0		ENST00000532042.5_1_11:65479717-65480742:+|nuORF;ENST00000527544.5_1_11:65480238-65482390:+|nuORF;nc|ENSG00000172977|Q92993-2|KAT5;nc|ENSG00000172977|Q92993-4|KAT5;nc|ENSG00000172977|Q92993|KAT5;ENSG00000172977|ENST00000341318|KAT5	ENST00000532042.5_1_11:65479717-65480742:+|nuORF	ENST00000532042.5_1_11:65479717-65480742:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2954711914062	2	518.266542	1034.51853	0.45543	0.00023604	1.3665	0.00070821	1.8219	0.00094425	518.2673776635228	63.771	0.4121	63.866	63.681	64.093	0.0951					23	14	2	0	0	0	0.34039	1	15782	15782		15.847	1.2655	1	188120			52375	6682	29923	29924	64173	64173					0.0026518727172515355
VHYLPEFL	8	Unmodified	_VHYLPEFL_					0	0	0			REV__ENSG00000175264|ENST00000308064|CHST1	REV__ENSG00000175264|ENST00000308064|CHST1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.2738952636719	2	509.273835	1016.53312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.61	1	116.63	116.13	117.13	0.020988								0	0	0	0.37595	1	30253	30253		2.8892	0	1		+		52376	17884	29924	29925	64174	64174					0.025512594198971783
VHYLWKKW	8	Unmodified	_VHYLWKKW_					0	0	0		ENSG00000232113|ENST00000417563|TEX50	ENSG00000232113|ENST00000417563|TEX50	ENSG00000232113|ENST00000417563|TEX50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3251953125	2	580.324194	1158.63383	0.16218	9.412E-05	3.9278	0.0022794	4.0899	0.0023735	580.8284645560626	18.13	0.55204	18.13	17.898	18.451	0					45	18	4	0	0	0	0.45942	1	1890	1890		2.5775	0.29471	1	149450			52377	8474	29925	29926	64175	64175					0.060863361934025306
VHYLWKKW	8	Unmodified	_VHYLWKKW_					0	0	0		ENSG00000232113|ENST00000417563|TEX50	ENSG00000232113|ENST00000417563|TEX50	ENSG00000232113|ENST00000417563|TEX50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.324951171875	2	580.324194	1158.63383	0.11246	6.5266E-05	3.2654	0.001895	3.3779	0.0019603	580.3250024871854	18.289	0.54225	18.172	17.928	18.47	-0.11739					41	18	3	0	0	0	0.45942	1	1935	1935		2.5775	0.92486	1	133080			52378	8474	29925	29926	64176	64176					0.060863361934025306
VIAADGSKLF	10	Unmodified	_VIAADGSKLF_					0	0	0			REV__ENST00000447052.1_1_21:24762753-24763314:+|nuORF	REV__ENST00000447052.1_1_21:24762753-24763314:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.7817077636719	2	510.78985	1019.56515	0.30292	0.00015473	-0.20808	-0.00010629	0.094842	4.8444E-05	510.7897786837194	81.71	0.57401	81.71	81.478	82.052	0					59	22	4	0	0	0	0.29978	1	21292	21292		20.454	2.3186	1	547980	+		52379	21086	29926	29927	64177	64177					0.05614627103057046
VIAADGSKLF	10	Unmodified	_VIAADGSKLF_					0	0	0			REV__ENST00000447052.1_1_21:24762753-24763314:+|nuORF	REV__ENST00000447052.1_1_21:24762753-24763314:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.7818603515625	2	510.78985	1019.56515	0.26663	0.00013619	-0.2463	-0.00012581	0.020335	1.0387E-05	510.78981505482454	81.775	0.63351	81.751	81.395	82.028	-0.02404					67	27	4	0	0	0	0.33817	1	21243	21243		14.838	0.93222	1	664850	+		52380	21086	29926	29927	64178	64178					0.05614627103057046
VIAAVFIVLK	10	Unmodified	_VIAAVFIVLK_					0	0	0		nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF;nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;ENST00000553508.5_1_14:71413601-71435877:+|nuORF	nc|ENSG00000100731|Q96RV3-2|PCNX1	nc|ENSG00000100731|Q96RV3-2|PCNX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.8599853515625	2	536.860078	1071.7056	0.59574	0.00031983	-0.13979	-7.5049E-05	0.45594	0.00024478	536.8600706196167	53.656	2.951	53.646	53.192	56.143	-0.0096092					266	108	5	0	0	0	0.2892	1	12971	12971		21.747	1.293	1	27898000			52381	1625	29927	29928	64179	64179					0.17261830827260383
VIADHLKPF	9	Unmodified	_VIADHLKPF_					0	0	0			REV__nc|ENSG00000087470|O00429-4|DNM1L	REV__nc|ENSG00000087470|O00429-4|DNM1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3135375976562	2	520.300384	1038.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.276	1	70.276	69.776	70.776	0								0	0	0	0.17683	1	17803	17803		28.487	1.6032	1		+		52382	13997	29928	29929	64180	64180					0.06846637202556849
VIADSSDQPI	10	Unmodified	_VIADSSDQPI_					0	0	0			REV__nc|ENSG00000145979|Q9P0N9-3|TBC1D7	REV__nc|ENSG00000145979|Q9P0N9-3|TBC1D7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3322143554688	2	522.764029	1043.5135	0.091488	4.7827E-05	1.2366	0.00064644	1.3281	0.00069427	522.7646216156801	28.226	0.44748	28.226	27.963	28.41	0.0004673					30	15	3	0	0	0	0.3156	1	4864	4864		10.824	0.75	1	250100	+		52383	16320	29929	29930	64181	64181					-0.006511613815291639
VIADVQLVT	9	Unmodified	_VIADVQLVT_					0	0	0		nc|ENSG00000214050|Q8IX29-2|FBXO16;ENSG00000214050|ENST00000380254|FBXO16;ENST00000520481.1_1_8:28304597-28321161:-|nuORF	nc|ENSG00000214050|Q8IX29-2|FBXO16	nc|ENSG00000214050|Q8IX29-2|FBXO16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.29766845703125	2	479.2844	956.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.215	1	63.215	62.715	63.715	0								0	0	0	0.21673	1	15643	15643		17.113	0	1				52384	8376	29930	29931	64182	64182					0.07423224728779587
VIADVQLVT	9	Unmodified	_VIADVQLVT_					0	0	0		nc|ENSG00000214050|Q8IX29-2|FBXO16;ENSG00000214050|ENST00000380254|FBXO16;ENST00000520481.1_1_8:28304597-28321161:-|nuORF	nc|ENSG00000214050|Q8IX29-2|FBXO16	nc|ENSG00000214050|Q8IX29-2|FBXO16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2976379394531	2	479.2844	956.554247	0.31476	0.00015086	0.13766	6.5978E-05	0.45241	0.00021683	479.2843757828972	62.757	0.68387	62.852	62.544	63.228	0.095722					52	24	3	0	0	0	0.17787	1	15600	15600		26.884	1.4843	1	775300			52385	8376	29930	29931	64183	64183					0.07423224728779587
VIADVQLVT	9	Unmodified	_VIADVQLVT_					0	0	0		nc|ENSG00000214050|Q8IX29-2|FBXO16;ENSG00000214050|ENST00000380254|FBXO16;ENST00000520481.1_1_8:28304597-28321161:-|nuORF	nc|ENSG00000214050|Q8IX29-2|FBXO16	nc|ENSG00000214050|Q8IX29-2|FBXO16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2975158691406	2	479.2844	956.554247	0.22025	0.00010556	0.072198	3.4603E-05	0.29245	0.00014017	479.2843337578549	62.825	0.64713	62.816	62.57	63.217	-0.0085564					53	23	4	0	0	0	0.17787	1	15633	15633		26.884	6.43	1	802750			52386	8376	29930	29931	64184	64184					0.07423224728779587
VIAESVVKK	9	Unmodified	_VIAESVVKK_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.80828857421875	2	486.808042	971.601532	0.20391	9.9264E-05	0.3673	0.0001788	0.57121	0.00027807	486.8081304168429	21.924	0.48993	21.875	21.548	22.038	-0.049377					33	17	2	0	0	0	0.04299	1	2974	2974		55.503	16.888	1	507900			52387	2432	29931	29932	64185	64185					0.11459503999765275
VIAFIMKIT	9	Unmodified	_VIAFIMKIT_					0	0	0			REV__ENSG00000186867|ENST00000394427|QRFPR	REV__ENSG00000186867|ENST00000394427|QRFPR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3173828125	2	518.317189	1034.61982	0.40032	0.0002075	0.024215	1.2551E-05	0.42454	0.00022005	518.3171293624647	76.325	3.1646	76.325	75.369	78.533	0					457	116	5	0	0	0	0.32733	1	20122	20122		4.756	4.756	1	8466300	+		52388	18476	29932	29933	64186	64186					0.10389922650119843
VIAIVEVRSFF	11	Unmodified	_VIAIVEVRSFF_					0	0	0		ENST00000512260.5_2_5:175603743-175612170:-|nuORF	ENST00000512260.5_2_5:175603743-175612170:-|nuORF	ENST00000512260.5_2_5:175603743-175612170:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.752685546875	3	427.251813	1278.73361	0.19232	8.217E-05	0.48687	0.00020802	0.67919	0.00029019	427.2520097155117	64.238	0.24032	64.238	64.13	64.37	0					10	8	2	0	0	0	0.33182	1	15930	15930		3.0723	0	1	70522			52389	11393	29933	29934	64187	64187					0.10539109016690418
VIALMLDEF	9	Unmodified	_VIALMLDEF_					0	0	0			REV__ANXA3|p.L240M|1|0.12|ENSG00000138772|chr4:78597402-78597402|C/A|missense_variant	REV__ANXA3|p.L240M|1|0.12|ENSG00000138772|chr4:78597402-78597402|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.361083984375	2	525.780636	1049.54672	0.29733	0.00015633	-4.0211	-0.0021142	-3.7238	-0.0019579	525.7788761435069	28.501	0.21827	28.501	28.36	28.578	0					12	7	2	0	0	0	0.23147	1	4970	4970		8.5933	0.68312	1	73111	+		52390	13106	29934	29935	64188	64188					0.023927491368112896
VIAPKMLIN	9	Unmodified	_VIAPKMLIN_					0	0	0		ENSG00000172487|ENST00000533152|OR8J1	ENSG00000172487|ENST00000533152|OR8J1	ENSG00000172487|ENST00000533152|OR8J1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8074035644531	2	499.806988	997.599423	0.26186	0.00013088	0.13622	6.8085E-05	0.39808	0.00019896	499.80726080476256	69.219	0.75208	69.219	68.951	69.703	0					53	26	3	0	0	0	0.32415	1	17512	17512		5.2307	0	1	491370			52391	6638	29935	29936	64189	64189					0.10052751990303932
VIASGVVPLL	10	Unmodified	_VIASGVVPLL_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7817687988281	2	484.312961	966.611368	0.2731	0.00013226	0.21503	0.00010414	0.48812	0.0002364	484.31306993036435	55.412	0.35549	55.393	55.261	55.616	-0.019077					21	12	2	0	0	0	0.31165	1	13217	13217		15.847	5.7733	1	242160			52392	4655	29936	29937	64190	64190					0.12672692005139652
VIASGVVPLL	10	Unmodified	_VIASGVVPLL_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	484.312961	966.611368	0.098633	4.7769E-05	0.60369	0.00029238	0.70233	0.00034015	484.31329600869975	55.495	0.4612	55.495	55.246	55.707	0	0.026708	0.00027908	NaN	15.847	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275480			52393	4655	29936	29937							0.12672692005139652
VIASGVVPLL	10	Unmodified	_VIASGVVPLL_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	484.312961	966.611368	0.43101	0.00020875	0.21384	0.00010356	0.64485	0.00031231	484.31304289208055	55.446	0.37814	55.517	55.297	55.675	0.070885	0.048762	-9.8542E-05	NaN	15.847	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302760			52394	4655	29936	29937							0.12672692005139652
VIASHPLL	8	Unmodified	_VIASHPLL_					0	0	0		ENST00000394660.6_1_15:81605811-81605907:+|nuORF	ENST00000394660.6_1_15:81605811-81605907:+|nuORF	ENST00000394660.6_1_15:81605811-81605907:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.2631530761719	2	425.263271	848.511988	-0.093615	-3.9811E-05	-0.20825	-8.8563E-05	-0.30187	-0.00012837	425.26331416910784	59.003	1.7593	59.003	58.654	60.413	0					186	62	6	0	0	0	0.33916	1	14502	14502		26.341	0	1	9301000			52395	10075	29937	29938	64191	64191					0.08167294111046886
VIASHPLL	8	Unmodified	_VIASHPLL_					0	0	0		ENST00000394660.6_1_15:81605811-81605907:+|nuORF	ENST00000394660.6_1_15:81605811-81605907:+|nuORF	ENST00000394660.6_1_15:81605811-81605907:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.2632751464844	2	425.263271	848.511988	0.049806	2.1181E-05	-0.32032	-0.00013622	-0.27051	-0.00011504	425.26326659554667	58.939	1.6376	58.925	58.583	60.22	-0.014267					160	57	5	0	0	0	0.2705	2	14252	14252;14490		34.187	0	1	9273300			52396	10075	29937	29938	64192;64193	64192					0.08167294111046886
VICFKHFC	8	Unmodified	_VICFKHFC_					0	0	0		ENST00000560753.1_1_15:78640187-78640316:+|nuORF	ENST00000560753.1_1_15:78640187-78640316:+|nuORF	ENST00000560753.1_1_15:78640187-78640316:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8206787109375	2	498.743334	995.472114	0.59524	0.00029687	-0.29427	-0.00014676	0.30097	0.00015011	498.74342800411085	84.912	0.49976	84.993	84.78	85.28	0.080887					25	19	2	0	0	0	0.34297	1	22276	22276		6.3541	0	1	141370			52397	11902	29938	29939	64194	64194					-0.025802921555396097
VIDGPQITI	9	Unmodified	_VIDGPQITI_					0	0	0			REV__nc|ENSG00000205726|Q15811-9|ITSN1	REV__nc|ENSG00000205726|Q15811-9|ITSN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2763977050781	2	478.276575	954.538597	0.072493	3.4671E-05	-0.32369	-0.00015481	-0.2512	-0.00012014	478.2763633006084	64.915	1.0706	64.915	64.563	65.634	0					115	38	5	0	0	0	0.07432	1	16223	16223		43.858	0	1	1481100	+	+	52398	23174	29939	29940	64195	64195					0.0595093821170849
VIDMLLIYKA	10	Unmodified	_VIDMLLIYKA_					0	0	0			REV__ENST00000477081.1_1_17:59477759-59482423:+|nuORF	REV__ENST00000477081.1_1_17:59477759-59482423:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.8458251953125	2	589.84631	1177.67807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.59	1	114.61	114.11	115.11	0.016708								0	0	0	0.38166	1	29798	29798		1.4819	0.8804	1		+		52399	15110	29940	29941	64196	64196					0.09633559504732148
VIDRWDIT	8	Unmodified	_VIDRWDIT_					0	0	0			REV__ENST00000546884.1_1_12:56474084-56480451:+|nuORF	REV__ENST00000546884.1_1_12:56474084-56480451:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8288269042969	2	509.271824	1016.5291	0.40117	0.0002043	-0.1801	-9.1719E-05	0.22107	0.00011258	509.27159223699834	45.039	0.45076	45.108	44.894	45.345	0.068569					28	15	3	0	0	0	0.3366	1	9973	9973		7.9102	0	1	214750	+		52400	13663	29941	29942	64197	64197					0.02149169926178729
VIDVDHFF	8	Unmodified	_VIDVDHFF_					0	0	0		ENSG00000151881|ENST00000397080|TMEM267	ENSG00000151881|ENST00000397080|TMEM267	ENSG00000151881|ENST00000397080|TMEM267	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3039855957031	2	496.247818	990.481082	0.50476	0.00025048	-0.14812	-7.3506E-05	0.35663	0.00017698	496.24757827091094	86.76	0.35595	86.754	86.58	86.936	-0.0056229					19	13	2	0	0	0	0.34272	1	22838	22838		7.9102	3.1541	1	138840			52401	4989	29942	29943	64198	64198					-0.014539039938540554
VIDVTFPSV	9	Unmodified	_VIDVTFPSV_					0	0	0		nc|ENSG00000145029|Q9BSH3-2|NICN1;ENST00000497742.6_1_3:49462781-49466699:-|nuORF;ENST00000422593.5_1_3:49462567-49466699:-|nuORF;ENSG00000145029|ENST00000273598|NICN1	nc|ENSG00000145029|Q9BSH3-2|NICN1	nc|ENSG00000145029|Q9BSH3-2|NICN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2323913574219	2	488.771126	975.527698	0.45544	0.00022261	-2.8392	-0.0013877	-2.3838	-0.0011651	488.7708816294638	73.083	0.47147	73.054	72.738	73.209	-0.029305					22	16	2	0	0	0	0.24688	1	18663	18663		14.838	4.7643	1	116890			52402	4630	29943	29944	64199	64199					0.03895535837443731
VIEAAETPF	9	Unmodified	_VIEAAETPF_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.3418273925781	2	488.752933	975.491313	0.47392	0.00023163	-0.89271	-0.00043632	-0.41879	-0.00020469	488.7525243114461	65.786	0.66508	65.775	65.478	66.143	-0.011337					39	23	2	0	0	0	0.21137	1	16366	16366		24.674	1.5255	1	327840			52403	7882	29944	29945	64200	64200					0.0025865894070875584
VIEAKNSFI	9	Unmodified	_VIEAKNSFI_					0	0	0			REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.7812805175781	2	510.78985	1019.56515	0.30292	0.00015473	-0.20808	-0.00010629	0.094842	4.8444E-05	510.7897786837194	81.71	0.57401	81.71	81.478	82.052	0					59	22	4	0	0	0	0.25989	1	21250	21250		14.838	0	1	547980	+		52404	19113	29945	29946	64201	64201					0.056146271030456774
VIEAVPRPT	9	Unmodified	_VIEAVPRPT_					0	0	0			REV__ENSG00000107018|ENST00000223862|RLN1	REV__ENSG00000107018|ENST00000223862|RLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7828063964844	2	491.290017	980.565481	0.21511	0.00010568	0.008433	4.143E-06	0.22354	0.00010982	491.2898329999925	26.276	1.2521	26.276	25.955	27.207	0					71	43	2	0	0	0	0.28128	1	4371	4371		11.64	0.14559	1	287260	+		52405	14541	29946	29947	64202	64202					0.07442046822893644
VIEAVPRPT	9	Unmodified	_VIEAVPRPT_					0	0	0			REV__ENSG00000107018|ENST00000223862|RLN1	REV__ENSG00000107018|ENST00000223862|RLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.78271484375	2	491.290017	980.565481	0.20172	9.9105E-05	-0.13967	-6.862E-05	0.062051	3.0485E-05	491.2898320077672	26.223	1.0971	26.184	25.871	26.968	-0.038671					56	38	2	0	0	0	0.28128	2	4377	4377;4383		11.64	0.14559	1	317580	+		52406	14541	29946	29947	64203;64204	64203					0.07442046822893644
VIEAVPRPT	9	Unmodified	_VIEAVPRPT_					0	0	0			REV__ENSG00000107018|ENST00000223862|RLN1	REV__ENSG00000107018|ENST00000223862|RLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.7828063964844	2	491.290017	980.565481	0.3591	0.00017642	-0.2538	-0.00012469	0.10529	5.173E-05	491.2897730806143	26.283	1.1671	26.261	25.923	27.09	-0.022238					59	41	2	0	0	0	0.28128	1	4379	4379		11.64	0.81637	1	370870	+		52407	14541	29946	29947	64205	64205					0.07442046822893644
VIEDFSRHKI	10	Unmodified	_VIEDFSRHKI_					0	0	0		ENST00000054666.10_1_1:7831420-7833566:+|nuORF	ENST00000054666.10_1_1:7831420-7833566:+|nuORF	ENST00000054666.10_1_1:7831420-7833566:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.34375	2	622.343312	1242.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.279	1	93.365	92.865	93.865	0.08667								0	0	0	0.38126	1	24835	24835		1.6526	0	1				52408	8771	29947	29948	64206	64206					0.06044177317426147
VIEHRLPF	8	Unmodified	_VIEHRLPF_					0	0	0			REV__ENSG00000127580|ENST00000293883|WDR24	REV__ENSG00000127580|ENST00000293883|WDR24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.3135681152344	2	505.792727	1009.5709	0.32321	0.00016348	0.5273	0.0002667	0.85051	0.00043018	505.7927436152637	57.392	0.42015	57.478	57.294	57.714	0.085621					20	14	2	0	0	0	0.33995	1	13832	13832		15.768	1.8622	1	407660	+		52409	15346	29948	29949	64207	64207					0.06649770405363142
VIEKPLDKF	9	Unmodified	_VIEKPLDKF_					0	0	0		ENSG00000131437|ENST00000403231|KIF3A	ENSG00000131437|ENST00000403231|KIF3A	ENSG00000131437|ENST00000403231|KIF3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7916870117188	2	544.82115	1087.62775	0.96371	0.00052505	-0.19162	-0.0001044	0.77209	0.00042065	544.8211758164855	60.735	0.17041	60.832	60.698	60.868	0.096985					7	5	2	0	0	0	0.24311	1	14842	14842		11.64	1.5664	1	141440			52410	3565	29949	29950	64208	64208					0.08743773171227076
VIELNGMVVE	10	Unmodified	_VIELNGMVVE_					0	0	0			REV__ENST00000546884.1_1_12:56474084-56480451:+|nuORF	REV__ENST00000546884.1_1_12:56474084-56480451:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8220825195312	2	551.794275	1101.574	0.17298	9.5451E-05	-2.053	-0.0011328	-1.88	-0.0010374	551.7926786269161	31.262	0.15917	31.262	31.202	31.361	0					8	5	2	0	0	0	0.32054	1	5823	5823		3.2813	0.97858	1	49834	+		52411	13663	29950	29951	64209	64209					0.02727232677216307
VIERFPTIGQ	10	Unmodified	_VIERFPTIGQ_					0	0	0		ENSG00000158169|ENST00000289081|FANCC	ENSG00000158169|ENST00000289081|FANCC	ENSG00000158169|ENST00000289081|FANCC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8303833007812	2	580.327131	1158.63971	0.0081984	4.7577E-06	-1.327	-0.00077007	-1.3188	-0.00076531	580.3251437089202	18.303	0.45375	18.245	18.004	18.458	-0.058174					41	15	4	0	0	0	0.39227	1	1870	1870		4.897	0	1	153620			52412	5346	29951	29952	64210	64210					0.0667338991440829
VIEVRSNPRPV	11	Unmodified	_VIEVRSNPRPV_					0	0	0			REV__NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	REV__NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3694458007812	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.156	1	94.156	93.656	94.656	0								0	0	0	0.36517	1	25102	25102		4.897	0	1		+		52413	18894	29952	29953	64211	64211					0.1033955510006308
VIEWGGCVHLL	11	Unmodified	_VIEWGGCVHLL_					0	0	0			REV__ENST00000402010.6_1_11:63676765-63677272:+|nuORF	REV__ENST00000402010.6_1_11:63676765-63677272:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.2238464355469	3	409.218115	1224.63251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.145	1	48.189	47.689	48.689	0.04332								0	0	0	0.34161	1	10984	10984		5.0475	0	1		+		52414	20712	29953	29954	64212	64212					0.029183340423514892
VIFDETLQK	9	Unmodified	_VIFDETLQK_					0	0	0		nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2;ENST00000465667.6_1_22:30218318-30228314:-|nuORF;ENST00000458594.5_1_22:30197094-30223519:-|nuORF	nc|ENSG00000100325|Q9H1I8-3|ASCC2	nc|ENSG00000100325|Q9H1I8-3|ASCC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.7664184570312	2	546.800414	1091.58628	0.5854	0.0003201	-1.906	-0.0010422	-1.3206	-0.00072211	546.7988974258919	46.001	0.3343	46.001	45.86	46.194	0					19	11	2	0	0	0	0.14646	1	10337	10337		36.506	0.37917	1	490630			52415	1570	29954	29955	64213	64213					0.04414592411899321
VIFEGFFAH	9	Unmodified	_VIFEGFFAH_					0	0	0		ENST00000493388.5_1_6:30594710-30608409:+|nuORF;ENST00000468713.5_1_6:30594689-30613691:+|nuORF;nc|ENSG00000137343|Q5SQI0-7|ATAT1;nc|ENSG00000137343|Q5SQI0-6|ATAT1;nc|ENSG00000137343|Q5SQI0-5|ATAT1;nc|ENSG00000137343|Q5SQI0-4|ATAT1;nc|ENSG00000137343|Q5SQI0-3|ATAT1;ENSG00000137343|ENST00000330083|ATAT1;nc|ENSG00000137343|Q5SQI0|ATAT1;ENST00000462304.5_1_6:30596186-30613691:+|nuORF	ENST00000493388.5_1_6:30594710-30608409:+|nuORF	ENST00000493388.5_1_6:30594710-30608409:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2799682617188	2	533.77146	1065.52837	0.52239	0.00027884	-0.3607	-0.00019253	0.16169	8.6307E-05	533.7714515537987	70.443	0.95596	70.418	70.015	70.971	-0.024864					43	33	2	0	0	0	0.089551	1	17818	17818		36.044	29.321	1	1059100			52416	4043	29955	29956	64214	64214					-0.0017762472286904085
VIFFLPWQK	9	Unmodified	_VIFFLPWQK_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3443603515625	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.09	1	114.08	113.58	114.58	-0.019096								0	0	0	0.26704	1	29639	29639		0.6015	0.076735	1				52417	2611	29956	29957	64215	64215					0.08828373650385402
VIFGHSALDI	10	Unmodified	_VIFGHSALDI_					0	0	0			REV__ENSG00000146070|ENST00000274793|PLA2G7	REV__ENSG00000146070|ENST00000274793|PLA2G7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.326171875	2	536.295299	1070.57605	0.47832	0.00025652	1.7133	0.00091886	2.1917	0.0011754	536.295974705482	85.954	0.64687	86.038	85.669	86.315	0.084251					36	23	2	0	0	0	0.31691	1	22482	22482		9.3831	1.473	1	144040	+		52418	16326	29957	29958	64216	64216					0.043580294773164496
VIFILNLNKL	10	Unmodified	_VIFILNLNKL_					0	0	0			REV__ENSG00000139579|ENST00000267023|NABP2	REV__ENSG00000139579|ENST00000267023|NABP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2924194335938	2	593.881542	1185.74853	0.55795	0.00033136	-0.26819	-0.00015927	0.28976	0.00017209	593.8809064795443	54.213	0.22166	54.197	54.002	54.224	-0.015923					9	7	2	0	0	0	0.31629	1	12828	12828		10.074	0	1	85400	+		52419	15992	29958	29959	64217	64217					0.16308600884713087
VIFITAEGLL	10	Unmodified	_VIFITAEGLL_					0	0	0			REV__ENSG00000125741|ENST00000263275|OPA3	REV__ENSG00000125741|ENST00000263275|OPA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2603759765625	2	538.323525	1074.6325	0.55965	0.00030127	-0.71696	-0.00038595	-0.15731	-8.4684E-05	538.3231628014802	72.154	0.37759	72.211	71.977	72.355	0.056572					22	13	2	0	0	0	0.31165	1	18386	18386		15.847	2.3393	1	172130	+		52420	15282	29959	29960	64218	64218					0.09816657313990618
VIFKDFVNK	9	Unmodified	_VIFKDFVNK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3215942382812	2	555.321317	1108.62808	0.27398	0.00015215	0.24577	0.00013648	0.51975	0.00028863	555.321349371745	42.354	0.795	42.439	42.18	42.975	0.085197					68	28	4	0	0	0	0.0016724	2	9202	9202;9247		114.19	60.354	1	1569100			52421	6752	29960	29961	64219;64220	64219					0.07811192891063001
VIFKDFVNK	9	Unmodified	_VIFKDFVNK_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3217163085938	2	555.321317	1108.62808	0.27691	0.00015377	0.3419	0.00018987	0.61881	0.00034364	555.321450646891	42.256	0.91963	42.348	42.095	43.015	0.091362					79	32	4	0	0	0	0.0016724	2	9208	9161;9208		114.19	51.614	1	1599200			52422	6752	29960	29961	64221;64222	64222					0.07811192891063001
VIFLLTSLK	9	Unmodified	_VIFLLTSLK_					0	0	0		ENST00000523638.5_1_19:37016107-37016215:-|nuORF	ENST00000523638.5_1_19:37016107-37016215:-|nuORF	ENST00000523638.5_1_19:37016107-37016215:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3238525390625	2	517.336436	1032.65832	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.773	1	70.773	70.273	71.273	0								0	0	0	0.20977	1	17954	17954		19.362	7.7216	1				52423	11514	29961	29962	64223	64223					0.1432955155628406
VIFLNTRRK	9	Unmodified	_VIFLNTRRK_					0	0	0		nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF	nc|ENSG00000156976|Q14240-2|EIF4A2	nc|ENSG00000156976|Q14240-2|EIF4A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.8587646484375	2	573.858932	1145.70331	0.20277	0.00011636	-0.019036	-1.0924E-05	0.18374	0.00010544	573.8589324807471	24.739	0.53167	24.739	24.454	24.986	0					31	17	2	0	0	0	0.28674	1	3850	3850		10.824	0	1	139480			52424	5273	29962	29963	64224	64224					0.13628795142176386
VIFLNTRRK	9	Unmodified	_VIFLNTRRK_					0	0	0		nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF	nc|ENSG00000156976|Q14240-2|EIF4A2	nc|ENSG00000156976|Q14240-2|EIF4A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.8590698242188	2	573.858932	1145.70331	0.27191	0.00015604	-0.15536	-8.9155E-05	0.11654	6.688E-05	573.8587901122876	24.825	0.64569	24.769	24.514	25.16	-0.055931					34	22	2	0	0	0	0.31417	1	3874	3874		6.7232	0	1	162890			52425	5273	29962	29963	64225	64225					0.13628795142176386
VIFLNTRRK	9	Unmodified	_VIFLNTRRK_					0	0	0		nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF	nc|ENSG00000156976|Q14240-2|EIF4A2	nc|ENSG00000156976|Q14240-2|EIF4A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.859130859375	2	573.858932	1145.70331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.75	1	24.719	24.219	25.219	-0.031408								0	0	0	0.2362	1	3843	3843		10.824	0	1				52426	5273	29962	29963	64226	64226					0.13628795142176386
VIFLNTRRK	9	Unmodified	_VIFLNTRRK_					0	0	0		nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF	nc|ENSG00000156976|Q14240-2|EIF4A2	nc|ENSG00000156976|Q14240-2|EIF4A2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	573.858932	1145.70331	0.27191	0.00015604	-0.15536	-8.9155E-05	0.11654	6.688E-05	573.8587901122876	24.825	0.64569	24.769	24.514	25.16	-0.055931	0.015049	-8.3922E-05	NaN	10.824	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162890			52427	5273	29962	29963							0.13628795142176386
VIFTGGVGK	9	Unmodified	_VIFTGGVGK_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1;ENST00000473474.5_1_1:111715860-111726929:+|nuORF	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.2608337402344	2	439.260728	876.506903	0.18528	8.1386E-05	0.54125	0.00023775	0.72653	0.00031914	439.2608581095662	36.128	0.81708	36.128	35.907	36.724	0					67	29	3	0	0	0	0.014206	3	7328	7280;7328;7379		72.968	26.947	1	1922300			52428	3767	29963	29964	64227;64228;64229	64228					0.06370990248433372
VIFTGGVGK	9	Unmodified	_VIFTGGVGK_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1;ENST00000473474.5_1_1:111715860-111726929:+|nuORF	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.2610168457031	2	439.260728	876.506903	0.21885	9.6134E-05	0.60245	0.00026463	0.82131	0.00036077	439.26088417176896	36.048	0.66308	36.131	35.874	36.537	0.082355					62	23	4	0	0	0	0.012386	2	7302	7253;7302		75.761	31.354	1	1697000			52429	3767	29963	29964	64230;64231	64231					0.06370990248433372
VIFTGGVGK	9	Unmodified	_VIFTGGVGK_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1;ENST00000473474.5_1_1:111715860-111726929:+|nuORF	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.2608947753906	2	439.260728	876.506903	0.32965	0.0001448	0.41539	0.00018247	0.74505	0.00032727	439.2608139245423	36.036	0.7266	36.122	35.869	36.595	0.086246					62	25	4	0	0	0	0.012386	3	7285	7238;7285;7338		75.761	31.354	1	1999300			52430	3767	29963	29964	64232;64233;64234	64233					0.06370990248433372
VIFVRRKT	8	Unmodified	_VIFVRRKT_					0	0	0			REV__ENST00000495274.1_1_21:45742848-45745285:+|nuORF	REV__ENST00000495274.1_1_21:45742848-45745285:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.253662109375	2	509.829643	1017.64473	0.26466	0.00013493	3.7399	0.0019067	4.0046	0.0020417	509.8293532724581	44.006	1.4532	44.09	43.765	45.218	0.083992					138	53	5	0	0	0	0.34131	1	9939	9939		1.8442	0	1	718480	+		52431	16096	29964	29965	64235	64235					0.13661738567691373
VIGHPVPWQI	10	Unmodified	_VIGHPVPWQI_					0	0	0		ENST00000518389.1_3_8:33346078-33346272:+|nuORF	ENST00000518389.1_3_8:33346078-33346272:+|nuORF	ENST00000518389.1_3_8:33346078-33346272:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.3272094726562	2	573.326934	1144.63931	0.51343	0.00029437	-0.38453	-0.00022046	0.12891	7.3905E-05	573.3268644983171	58.172	0.69889	58.154	57.821	58.52	-0.0172					64	25	3	0	0	0	0.29978	1	14130	14130		20.454	3.3407	1	866030			52432	11445	29965	29966	64236	64236					0.07278014985217851
VIGRLDIYI	9	Unmodified	_VIGRLDIYI_					0	0	0			REV__ENSG00000114491|ENST00000232607|UMPS	REV__ENSG00000114491|ENST00000232607|UMPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3343505859375	2	531.321317	1060.62808	0.43634	0.00023184	0.33129	0.00017602	0.76763	0.00040786	531.3213962031247	68.763	1.0086	68.835	68.484	69.493	0.071938					99	36	4	0	0	0	0.14076	1	17438	17438		32.305	9.5692	1	3176300	+		52433	14836	29966	29967	64237	64237					0.1001919289108173
VIGTGRPLL	9	Unmodified	_VIGTGRPLL_					0	0	0			REV__nc|ENSG00000087470|O00429-4|DNM1L	REV__nc|ENSG00000087470|O00429-4|DNM1L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.29510498046875	2	463.295102	924.575651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.004	1	56.075	55.575	56.575	0.070885								0	0	0	0.12743	1	13411	13411		39.957	7.6518	1		+		52434	13997	29967	29968	64238	64238					0.11034654548143408
VIGTWSLRN	9	Unmodified	_VIGTWSLRN_					0	0	0		ENSG00000136929|ENST00000616898|HEMGN	ENSG00000136929|ENST00000616898|HEMGN	ENSG00000136929|ENST00000616898|HEMGN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3038940429688	2	523.293091	1044.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.533	1	90.623	90.123	91.123	0.090668								0	0	0	0.2489	1	23992	23992		6.7232	0	1				52435	4013	29968	29969	64239	64239					0.05112565054423612
VIGVTGLVV	9	Unmodified	_VIGVTGLVV_					0	0	0			REV__ENSG00000185559|ENST00000341267|DLK1	REV__ENSG00000185559|ENST00000341267|DLK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.7785949707031	2	428.778754	855.542954	0.31971	0.00013708	-0.49852	-0.00021375	-0.17881	-7.6671E-05	428.7784674990695	78.709	0.75636	78.679	78.37	79.127	-0.030434					63	30	3	0	0	0	0.155	1	20370	20370		30.225	1.738	1	480940	+		52436	18390	29969	29970	64240	64240					0.10940447425286948
VIGVTGLVV	9	Unmodified	_VIGVTGLVV_					0	0	0			REV__ENSG00000185559|ENST00000341267|DLK1	REV__ENSG00000185559|ENST00000341267|DLK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	428.778754	855.542954	0.16219	6.9544E-05	-0.37429	-0.00016049	-0.2121	-9.0944E-05	428.7784909360081	78.622	0.7235	78.68	78.414	79.138	0.058151	0.0020822	0.00011716	NaN	30.225	56	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449610	+		52437	18390	29969	29970							0.10940447425286948
VIGVTGLVV	9	Unmodified	_VIGVTGLVV_					0	0	0			REV__ENSG00000185559|ENST00000341267|DLK1	REV__ENSG00000185559|ENST00000341267|DLK1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	428.778754	855.542954	0.31971	0.00013708	-0.49852	-0.00021375	-0.17881	-7.6671E-05	428.7784674990695	78.709	0.75636	78.679	78.37	79.127	-0.030434	0.00053058	1.0629E-05	NaN	30.225	63	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	480940	+		52438	18390	29969	29970							0.10940447425286948
VIHANPQR	8	Unmodified	_VIHANPQR_					0	0	0		ENST00000346872.7_2_17:37921598-37921754:-|nuORF	ENST00000346872.7_2_17:37921598-37921754:-|nuORF	ENST00000346872.7_2_17:37921598-37921754:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7895812988281	2	467.764501	933.514448	0.19204	8.9831E-05	-1.2408	-0.00058042	-1.0488	-0.00049059	467.7636743206531	20.159	0.34124	20.043	19.84	20.182	-0.11592					19	11	2	0	0	0	0.34337	1	2408	2408		5.2307	0	1	50046			52439	9565	29970	29971	64241	64241					0.04503142568705698
VIHITSGEAI	10	Unmodified	_VIHITSGEAI_					0	0	0		ENSG00000121270|ENST00000356608|ABCC11;nc|ENSG00000121270|Q96J66-2|ABCC11;ENST00000567385.5_1_16:48244807-48265838:-|nuORF	ENSG00000121270|ENST00000356608|ABCC11	ENSG00000121270|ENST00000356608|ABCC11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2785034179688	2	520.292756	1038.57096	0.22201	0.00011551	-0.42803	-0.0002227	-0.20601	-0.00010719	520.2925428720843	46.164	1.3001	46.224	45.926	47.226	0.059834					131	47	4	0	0	0	0.14015	1	10675	10675		39.957	1.3426	1	16254000			52440	2992	29971	29972	64242	64242					0.053217256147036096
VIHPGSTT	8	Unmodified	_VIHPGSTT_					0	0	0		ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.88885498046875	2	406.21906	810.423567	-0.13736	-5.5799E-05	1.9431	0.00078933	1.8058	0.00073353	406.2200301448542	17.89	1.3658	17.829	16.887	18.253	-0.060429					66	48	3	0	0	0	0.34297	1	1884	1884		6.3541	0.59368	1	63139			52441	2534	29972	29973	64243	64243					0.0107725380055399
VIHPGSTT	8	Unmodified	_VIHPGSTT_					0	0	0		ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	ENSG00000113812|ENST00000335754|ACTR8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	406.21906	810.423567	-0.26376	-0.00010714	1.0012	0.0004067	0.73742	0.00029955	406.2194962769623	17.797	0.84677	17.679	17.111	17.957	-0.11739	-0.0096887	-0.00026871	NaN	6.3541	45	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53149			52442	2534	29972	29973							0.0107725380055399
VIIAKKSLA	9	Unmodified	_VIIAKKSLA_					0	0	0		chr5:157035040-157037247|179|16.51|0.02|9.89|-|2|None,HAVCR1|1	chr5:157035040-157037247|179|16.51|0.02|9.89|-|2|None,HAVCR1|1	chr5:157035040-157037247|179|16.51|0.02|9.89|-|2|None,HAVCR1|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.8210754394531	2	471.820953	941.627353	0.029246	1.3799E-05	0.023835	1.1246E-05	0.053081	2.5045E-05	471.82084472020495	24.434	0.59652	24.434	24.194	24.79	0					35	19	3	0	0	0	0.30459	1	3767	3767		8.1555	0	1	108500			52443	168	29973	29974	64244	64244					0.15420398242042666
VIIAKKSLA	9	Unmodified	_VIIAKKSLA_					0	0	0		chr5:157035040-157037247|179|16.51|0.02|9.89|-|2|None,HAVCR1|1	chr5:157035040-157037247|179|16.51|0.02|9.89|-|2|None,HAVCR1|1	chr5:157035040-157037247|179|16.51|0.02|9.89|-|2|None,HAVCR1|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.8211364746094	2	471.820953	941.627353	0.060902	2.8735E-05	0.14801	6.9835E-05	0.20891	9.857E-05	471.82090337623816	24.52	0.39525	24.481	24.278	24.674	-0.038927					24	13	2	0	0	0	0.24467	1	3773	3773		17.113	0	1	110990			52444	168	29973	29974	64245	64245					0.15420398242042666
VIIKKLPVT	9	Unmodified	_VIIKKLPVT_					0	0	0			REV__nc|ENSG00000090487|Q9NZD8-2|SPG21	REV__nc|ENSG00000090487|Q9NZD8-2|SPG21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.277099609375	2	505.852253	1009.68995	0.88251	0.00044642	-0.79066	-0.00039996	0.091856	4.6465E-05	505.8518442603356	50.565	0.27789	50.61	50.461	50.739	0.044891					12	9	2	0	0	0	0.25526	1	11705	11705		1.8442	0	1	93527	+		52445	14043	29974	29975	64246	64246					0.18549544310224064
VIILEENSTPK	11	Unmodified	_VIILEENSTPK_					0	0	0		ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.9029541015625	3	414.902849	1241.68672	0.33937	0.0001408	-0.38147	-0.00015827	-0.042104	-1.7469E-05	414.9029769354514	38.632	1.777	38.729	37.871	39.648	0.097527					205	63	5	0	0	0	0.45202	1	7979	7979		4.4062	4.4062	1	2496000			52446	5396	29975	29976	64247	64247					0.07554204674897846
VIIMAYTTEF	10	Unmodified	_VIIMAYTTEF_					0	0	0		ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A	ENSG00000183873|ENST00000423572|SCN5A	ENSG00000183873|ENST00000423572|SCN5A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.3036499023438	2	594.304475	1186.5944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.034	1	85.021	84.521	85.521	-0.01284								0	0	0	0.36922	1	22305	22305		6.7232	0.51738	1				52447	7417	29976	29977	64248	64248					0.008564033369793833
VIIPAKPPV	9	Unmodified	_VIIPAKPPV_					0	0	0		nc|ENSG00000153066|Q6PKC3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3-3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	nc|ENSG00000153066|Q6PKC3|TXNDC11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.7779541015625	2	467.310221	932.605889	0.28522	0.00013328	-0.016828	-7.8638E-06	0.26839	0.00012542	467.3101234338581	53.324	0.074516	53.315	53.278	53.353	-0.0096054					4	2	2	0	0	0	0.21137	1	12588	12588		18.135	0	1	121300			52448	5057	29977	29978	64249	64249					0.13689013213320322
VIIPTAPL	8	Unmodified	_VIIPTAPL_					0	0	0		ENST00000540555.1_1_11:18503050-18505548:-|nuORF;nc|ENSG00000074319|Q99816-2|TSG101;ENSG00000074319|ENST00000251968|TSG101	ENST00000540555.1_1_11:18503050-18505548:-|nuORF	ENST00000540555.1_1_11:18503050-18505548:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2677917480469	2	412.268022	822.521491	0.21275	8.7711E-05	-0.073737	-3.0399E-05	0.13902	5.7311E-05	412.26782285519516	70.997	1.5871	71.058	70.69	72.277	0.060783					98	57	3	0	0	0	0.38703	1	18176	18176		20.871	0	1	4036500			52449	1018	29978	29979	64250	64250					0.103130623965626
VIIRADQRKL	10	Unmodified	_VIIRADQRKL_					0	0	0			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.370361328125	2	606.382771	1210.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.955	1	81.02	80.52	81.52	0.065094								0	0	0	0.37355	1	21055	21055		4.897	1.9018	1		+		52450	18958	29979	29980	64251	64251					0.15404449342349835
VIKASFSK	8	Unmodified	_VIKASFSK_					0	0	0			REV__ENSG00000198915|ENST00000395810|RASGEF1A	REV__ENSG00000198915|ENST00000395810|RASGEF1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.7498779296875	2	440.268553	878.522553	0.14375	6.3287E-05	-0.80375	-0.00035386	-0.66	-0.00029058	440.2682699432228	62.868	0.35049	62.868	62.661	63.011	0					14	12	2	0	0	0	0.31088	1	15518	15518		28.487	2.1456	1	93735	+		52451	18889	29980	29981	64252	64252					0.07843276765470364
VIKATLWAP	9	Unmodified	_VIKATLWAP_					0	0	0		ENST00000246657.2_1_17:38710282-38710393:-|nuORF	ENST00000246657.2_1_17:38710282-38710393:-|nuORF	ENST00000246657.2_1_17:38710282-38710393:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7852783203125	2	499.805303	997.596052	0.36919	0.00018452	1.2297	0.00061463	1.5989	0.00079915	499.8056111849838	49.764	0.46768	49.809	49.489	49.957	0.044891					38	17	3	0	0	0	0.21538	1	11525	11525		20.415	0	1	649760			52452	8902	29981	29982	64253	64253					0.09715825207933904
VIKATLWAP	9	Unmodified	_VIKATLWAP_					0	0	0		ENST00000246657.2_1_17:38710282-38710393:-|nuORF	ENST00000246657.2_1_17:38710282-38710393:-|nuORF	ENST00000246657.2_1_17:38710282-38710393:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7855224609375	2	499.805303	997.596052	0.3303	0.00016508	1.2982	0.00064886	1.6285	0.00081394	499.80581358538376	49.827	0.40242	49.847	49.537	49.939	0.020691					35	14	3	0	0	0	0.20167	1	11515	11515		12.241	0	1	498760			52453	8902	29981	29982	64254	64254					0.09715825207933904
VIKEKPQLVF	10	Unmodified	_VIKEKPQLVF_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	400.9149169921875	3	400.916541	1199.72779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.28	1	103.28	102.78	103.78	0.0082703								0	0	0	0.38104	1	27453	27453		1.7423	0.41263	1		+		52454	13679	29982	29983	64255	64255					0.1359201050502179
VIKHEHLF	8	Unmodified	_VIKHEHLF_					0	0	0			REV__ENSG00000123143|ENST00000242783|PKN1	REV__ENSG00000123143|ENST00000242783|PKN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.78167724609375	2	511.792727	1021.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.664	1	81.733	81.233	82.233	0.068993								0	0	0	0.35779	1	21273	21273		11.114	1.767	1		+		52455	15181	29983	29984	64256	64256					0.0609777040535846
VIKHHQRP	8	Unmodified	_VIKHHQRP_					0	0	0		nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1;QSER1|p.S508Hfs*30|1|0.17|ENSG00000060749|chr11:32933166-32933166|A/-|frameshift_variant;QSER1|p.L1093Tfs*33|1|0.07|ENSG00000060749|chr11:32934920-32934921|-/AACTCTT|frameshift_variant	nc|ENSG00000060749|Q2KHR3|QSER1	nc|ENSG00000060749|Q2KHR3|QSER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.8013916015625	2	507.801417	1013.58828	0.080184	4.0718E-05	0.19544	9.9243E-05	0.27562	0.00013996	507.80160216660914	16.151	0.44774	16.037	15.718	16.166	-0.11434					22	14	2	0	0	0	0.45169	1	1256	1256		5.2307	0.90143	1	47700			52456	753	29984	29985	64257	64257					0.08203110731028573
VIKHHQRP	8	Unmodified	_VIKHHQRP_					0	0	0		nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1;QSER1|p.S508Hfs*30|1|0.17|ENSG00000060749|chr11:32933166-32933166|A/-|frameshift_variant;QSER1|p.L1093Tfs*33|1|0.07|ENSG00000060749|chr11:32934920-32934921|-/AACTCTT|frameshift_variant	nc|ENSG00000060749|Q2KHR3|QSER1	nc|ENSG00000060749|Q2KHR3|QSER1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	507.801417	1013.58828	0.14118	7.1692E-05	-0.089557	-4.5477E-05	0.051624	2.6215E-05	507.80159003833523	15.997	0.64251	15.997	15.734	16.377	0	-0.043123	2.8764E-05	NaN	5.2307	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46061			52457	753	29984	29985							0.08203110731028573
VIKHHQRP	8	Unmodified	_VIKHHQRP_					0	0	0		nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1;QSER1|p.S508Hfs*30|1|0.17|ENSG00000060749|chr11:32933166-32933166|A/-|frameshift_variant;QSER1|p.L1093Tfs*33|1|0.07|ENSG00000060749|chr11:32934920-32934921|-/AACTCTT|frameshift_variant	nc|ENSG00000060749|Q2KHR3|QSER1	nc|ENSG00000060749|Q2KHR3|QSER1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.801417	1013.58828	0.14868	7.5499E-05	-0.39545	-0.00020081	-0.24678	-0.00012531	507.80144276895464	16.148	0.44903	16.086	15.756	16.205	-0.062534	0.046088	-0.00028191	NaN	5.2307	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34644			52458	753	29984	29985							0.08203110731028573
VIKHQNQQ	8	Unmodified	_VIKHQNQQ_					0	0	0			REV__nc|ENSG00000215695|Q92681|RSC1A1	REV__nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7748107910156	2	497.775065	993.535577	0.38411	0.0001912	-0.64655	-0.00032183	-0.26244	-0.00013064	497.7746506027163	22.019	0.32435	21.919	21.773	22.097	-0.10034					15	11	2	0	0	0	0.45307	1	3038	3038		4.756	2.9118	1	59402	+		52459	23191	29985	29986	64258	64258					0.038551078775640235
VIKHQNQQ	8	Unmodified	_VIKHQNQQ_					0	0	0			REV__nc|ENSG00000215695|Q92681|RSC1A1	REV__nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	497.775065	993.535577	0.32211	0.00016034	-0.60538	-0.00030135	-0.28327	-0.000141	497.7748505042307	21.992	0.34046	21.992	21.819	22.16	0	0.036507	2.0944E-05	NaN	4.756	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76723	+		52460	23191	29985	29986							0.038551078775640235
VIKKWNTP	8	Unmodified	_VIKKWNTP_					0	0	0			REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8030700683594	2	493.295102	984.575651	0.39843	0.00019655	1.9059	0.00094019	2.3044	0.0011367	493.29593399347044	43.791	0.69299	43.868	43.515	44.208	0.077515					39	25	2	0	0	0	0.33245	1	9584	9584		19.439	1.2926	1	287390	+		52461	23193	29986	29987	64259	64259					0.08274654548119997
VIKLEEQKE	9	Unmodified	_VIKLEEQKE_					0	0	0			REV__nc|ENSG00000138778|Q02224-3|CENPE	REV__nc|ENSG00000138778|Q02224-3|CENPE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.2960205078125	2	558.318971	1114.62339	0.42187	0.00023554	1.4538	0.00081167	1.8756	0.0010472	558.3196871175522	35.821	0.52133	35.904	35.54	36.062	0.082355					39	18	3	0	0	0	0.25202	1	7256	7256		10.824	0	1	209750	+		52462	15957	29987	29988	64260	64260					0.0706626395767671
VIKNPDVHQLV	11	Unmodified	_VIKNPDVHQLV_					0	0	0			REV__ENSG00000178997|ENST00000458580|EXD1	REV__ENSG00000178997|ENST00000458580|EXD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.77093505859375	3	421.24695	1260.71902	0.28404	0.00011965	0.87392	0.00036814	1.158	0.00048779	421.2464887539684	54.848	1.4943	54.848	54.188	55.682	0					92	54	4	0	0	0	0.32824	1	12942	12942		6.2344	0	1	1142700	+		52463	18054	29988	29989	64261	64261					0.09909036868543808
VIKNPDVHQLV	11	Unmodified	_VIKNPDVHQLV_					0	0	0			REV__ENSG00000178997|ENST00000458580|EXD1	REV__ENSG00000178997|ENST00000458580|EXD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.77081298828125	3	421.24695	1260.71902	0.31282	0.00013177	0.89329	0.00037629	1.2061	0.00050807	421.24647874843623	54.768	1.628	54.831	54.218	55.846	0.063202					93	60	4	0	0	0	0.32824	1	12915	12915		9.2438	4.1963	1	1131400	+		52464	18054	29988	29989	64262	64262					0.09909036868543808
VIKPMFVI	8	Unmodified	_VIKPMFVI_					0	0	0		ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF	ENSG00000106346|ENST00000306177|USP42	ENSG00000106346|ENST00000306177|USP42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.2529296875	2	473.793349	945.572146	0.42909	0.0002033	-0.3503	-0.00016597	0.078798	3.7334E-05	473.792965123002	78.69	0.96764	78.748	78.47	79.437	0.058151					95	41	4	0	0	0	0.3439	1	20283	20283		2.8892	2.8892	1	609190			52465	2073	29989	29990	64263	64263					0.09718268449910283
VIKQLNVIK	9	Unmodified	_VIKQLNVIK_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3189697265625	2	527.852784	1053.69102	1.0539	0.00055632	-0.87994	-0.00046448	0.17399	9.184E-05	527.8522683432456	50.402	0.71053	50.447	50.16	50.871	0.044891					70	25	5	0	0	0	0.25202	1	11774	11774		6.7232	0	1	566660	+		52466	15354	29990	29991	64264	64264					0.1663175867913651
VIKRAVINQ	9	Unmodified	_VIKRAVINQ_					0	0	0			REV__ENSG00000181072|ENST00000680005|CHRM2	REV__ENSG00000181072|ENST00000680005|CHRM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2985229492188	2	520.832383	1039.65021	-0.30579	-0.00015927	-1.0495	-0.00054663	-1.3553	-0.0007059	520.8317755986662	34.624	0.69791	34.701	34.39	35.088	0.077377					39	24	2	0	0	0	0.25938	1	6770	6770		4.3292	0	1	464230	+		52467	18135	29991	29992	64265	64265					0.13197417359492647
VIKRDQQKIKV	11	Unmodified	_VIKRDQQKIKV_					0	0	0		nc|ENSG00000165115|Q86VH2-4|KIF27	nc|ENSG00000165115|Q86VH2-4|KIF27	nc|ENSG00000165115|Q86VH2-4|KIF27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7684326171875	3	452.289149	1353.84562	-0.24257	-0.00010971	-0.45097	-0.00020397	-0.69354	-0.00031368	452.2888932891783	12.801	0.52173	12.734	12.58	13.102	-0.067495					39	17	4	0	0	0	0.33346	1	291	291		0.50596	0.41111	1	287150			52468	12811	29992	29993	64266	64266					0.18284963093674378
VIKVTMEDQR	10	Unmodified	_VIKVTMEDQR_					0	0	0			REV__ENSG00000157353|ENST00000288078|FCSK	REV__ENSG00000157353|ENST00000288078|FCSK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.9008483886719	3	406.888546	1217.64381	-0.17151	-6.9786E-05	0.24809	0.00010095	0.076581	3.116E-05	406.8889824325737	17.958	1.1901	17.958	17.424	18.614	0					116	40	5	0	0	0	0.40756	1	1671	1671		2.086	0	1	379940	+		52469	16780	29993	29994	64267	64267					0.04369111345818055
VILESIFLK	9	Unmodified	_VILESIFLK_					0	0	0		ENST00000464567.1_1_X:100629364-100630272:-|nuORF;ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK	ENST00000464567.1_1_X:100629364-100630272:-|nuORF	ENST00000464567.1_1_X:100629364-100630272:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3340454101562	2	531.333893	1060.65323	0.45918	0.00024398	0.41169	0.00021874	0.87087	0.00046272	531.3342786884443	69.093	0.77652	69.093	68.841	69.618	0					55	27	3	0	0	0	0.074552	1	17437	17437		43.772	9.3707	1	501540			52470	427	29994	29995	64268	64268					0.12533247693659177
VILESIFLK	9	Unmodified	_VILESIFLK_					0	0	0		ENST00000464567.1_1_X:100629364-100630272:-|nuORF;ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK	ENST00000464567.1_1_X:100629364-100630272:-|nuORF	ENST00000464567.1_1_X:100629364-100630272:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3214721679688	2	531.333893	1060.65323	0.45704	0.00024284	0.39989	0.00021248	0.85693	0.00045532	531.3342078461056	69.025	0.89261	69.097	68.854	69.747	0.071938					59	31	3	0	0	0	0.09064	1	17392	17392		39.95	15.929	1	448770			52471	427	29994	29995	64269	64269					0.12533247693659177
VILESIFLK	9	Unmodified	_VILESIFLK_					0	0	0		ENST00000464567.1_1_X:100629364-100630272:-|nuORF;ENSG00000010671|ENST00000308731|BTK;nc|ENSG00000010671|Q06187-2|BTK	ENST00000464567.1_1_X:100629364-100630272:-|nuORF	ENST00000464567.1_1_X:100629364-100630272:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3341674804688	2	531.333893	1060.65323	0.43672	0.00023205	0.60574	0.00032185	1.0425	0.0005539	531.3343310451513	69.102	0.93948	69.082	68.843	69.782	-0.01915					62	33	3	0	0	0	0.069366	1	17464	17464		45.7	9.5726	1	469090			52472	427	29994	29995	64270	64270					0.12533247693659177
VILEVMHE	8	Unmodified	_VILEVMHE_					0	0	0			REV__nc|ENSG00000284922|Q8WZ04-2|TOMT	REV__nc|ENSG00000284922|Q8WZ04-2|TOMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.788330078125	2	485.257328	968.500103	0.36267	0.00017599	-2.8941	-0.0014044	-2.5314	-0.0012284	485.2567745158887	35.927	0.10786	36.01	35.954	36.062	0.082355					5	3	2	0	0	0	0.34185	1	7229	7229		10.183	5.4274	1	51204	+		52473	23240	29995	29996	64271	64271					0.014593093055509598
VILLACAGFK	10	Unmodified	_VILLACAGFK_					0	0	0			REV__Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|14|1|sense	REV__Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|14|1|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.799560546875	2	517.806988	1033.59942	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.111	1	34.178	33.678	34.678	0.066704								0	0	0	0.33354	1	6685	6685		21.747	2.4897	1		+		52474	22726	29996	29997	64272	64272					0.08396751990289886
VILLFCGSAVL	11	Unmodified	_VILLFCGSAVL_					0	0	0			REV__ENSG00000236981|ENST00000375024|OR10G9	REV__ENSG00000236981|ENST00000375024|OR10G9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2774047851562	2	567.833203	1133.65185	0.15543	8.8256E-05	-1.9017	-0.0010799	-1.7463	-0.0009916	567.8320720831231	113.59	0.22174	113.57	113.47	113.69	-0.017311					34	26	2	0	0	0	0.33255	1	29529	29529		2.9952	0	1	23611	+		52475	19153	29997	29998	64273	64273					0.09037290333230885
VILLPQPPK	9	Unmodified	_VILLPQPPK_					0	0	0		nc|ENSG00000050628|P43115-12|PTGER3;chr7:102584338-102586955|344|12.1|0.0|20.21|-|1|TE_info:AluSg,AluSg_dup14912,Alu,SINE,donor,+,102586955,102587097|RASA4,None|3;chr7:102584338-102686033|145|14.07|0.0|20.42|-|1|TE_info:AluSg,AluSg_dup14918,Alu,SINE,donor,+,102686033,102686175|RASA4,None|3;ENST00000573538.5_2_16:67974380-67976796:-|nuORF;ENST00000499522.6_1_8:104178449-104258641:-|nuORF;ENST00000602743.1_1_17:13801940-13972716:-|nuORF	nc|ENSG00000050628|P43115-12|PTGER3	nc|ENSG00000050628|P43115-12|PTGER3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.82916259765625	2	502.828778	1003.643	0.41362	0.00020798	0.15737	7.9129E-05	0.57098	0.00028711	502.828766025352	51.579	1.921	51.579	50.433	52.354	0					176	70	4	0	0	0	0.079752	2	12008	11958;12008		41.84	10.954	1	3796600			52476	12573	29998	29999	64274;64275	64275					0.14132684759078984
VILLPQPPK	9	Unmodified	_VILLPQPPK_					0	0	0		nc|ENSG00000050628|P43115-12|PTGER3;chr7:102584338-102586955|344|12.1|0.0|20.21|-|1|TE_info:AluSg,AluSg_dup14912,Alu,SINE,donor,+,102586955,102587097|RASA4,None|3;chr7:102584338-102686033|145|14.07|0.0|20.42|-|1|TE_info:AluSg,AluSg_dup14918,Alu,SINE,donor,+,102686033,102686175|RASA4,None|3;ENST00000573538.5_2_16:67974380-67976796:-|nuORF;ENST00000499522.6_1_8:104178449-104258641:-|nuORF;ENST00000602743.1_1_17:13801940-13972716:-|nuORF	nc|ENSG00000050628|P43115-12|PTGER3	nc|ENSG00000050628|P43115-12|PTGER3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.82891845703125	2	502.828778	1003.643	0.33857	0.00017024	0.28036	0.00014097	0.61892	0.00031121	502.8288175607578	51.584	1.6965	51.631	50.741	52.437	0.046577					152	62	4	0	0	0	0.07432	1	11979	11979		43.858	13.222	1	4101000			52477	12573	29998	29999	64276	64276					0.14132684759078984
VILLPQPPK	9	Unmodified	_VILLPQPPK_					0	0	0		nc|ENSG00000050628|P43115-12|PTGER3;chr7:102584338-102586955|344|12.1|0.0|20.21|-|1|TE_info:AluSg,AluSg_dup14912,Alu,SINE,donor,+,102586955,102587097|RASA4,None|3;chr7:102584338-102686033|145|14.07|0.0|20.42|-|1|TE_info:AluSg,AluSg_dup14918,Alu,SINE,donor,+,102686033,102686175|RASA4,None|3;ENST00000573538.5_2_16:67974380-67976796:-|nuORF;ENST00000499522.6_1_8:104178449-104258641:-|nuORF;ENST00000602743.1_1_17:13801940-13972716:-|nuORF	nc|ENSG00000050628|P43115-12|PTGER3	nc|ENSG00000050628|P43115-12|PTGER3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.8289489746094	2	502.828778	1003.643	0.28316	0.00014238	0.34564	0.0001738	0.62879	0.00031618	502.82884370391037	51.738	2.0794	51.747	50.426	52.506	0.0095634					162	77	3	0	0	0	0.10197	2	11965	11965;12016		37.974	9.4872	1	3839000			52478	12573	29998	29999	64277;64278	64277					0.14132684759078984
VILMFVTTV	9	Unmodified	_VILMFVTTV_					0	0	0			REV__ENST00000563092.1_1_16:66587325-66599911:+|nuORF	REV__ENST00000563092.1_1_16:66587325-66599911:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.279541015625	2	511.801371	1021.58819	0.34933	0.00017879	-0.94012	-0.00048115	-0.59078	-0.00030236	512.302582567556	63.197	0.98992	63.197	62.807	63.797	0					82	36	4	0	0	0	0.22596	1	15695	15695		1.4819	0	1	705530	+		52479	19086	29999	30000	64279	64279					0.07825929896148409
VILPAEPRG	9	Unmodified	_VILPAEPRG_					0	0	0			REV__ENST00000511885.6_1_4:2230963-2243443:-|nuORF	REV__ENST00000511885.6_1_4:2230963-2243443:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.2854309082031	2	476.284734	950.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.77	1	102.77	102.27	103.27	0								0	0	0	0.25631	1	27320	27320		4.3292	0	1		+		52480	21753	30000	30001	64280	64280					0.07766064168470166
VILPPLSPYFK	11	Unmodified	_VILPPLSPYFK_					0	0	0		ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.381591796875	2	637.381374	1272.7482	0.27533	0.00017549	0.16772	0.0001069	0.44305	0.00028239	637.3813410879485	73.254	0.77654	73.254	72.961	73.738	0					81	27	4	0	0	0	0.1175	3	18727	18679;18727;18770		38.615	20.468	1	1118300			52481	6494	30001	30002	64281;64282;64283	64282					0.12273181164823654
VILPPLSPYFK	11	Unmodified	_VILPPLSPYFK_					0	0	0		ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.3815307617188	2	637.381374	1272.7482	0.42653	0.00027186	0.061529	3.9218E-05	0.48806	0.00031108	637.3812386909785	73.206	0.81672	73.26	72.98	73.797	0.053833					83	29	4	0	0	0	0.1175	3	18703	18656;18703;18757		38.615	14.594	1	1474300			52482	6494	30001	30002	64284;64285;64286	64285					0.12273181164823654
VILPPLSPYFK	11	Unmodified	_VILPPLSPYFK_					0	0	0		ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	ENSG00000170906|ENST00000485876|NDUFA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.3814697265625	2	637.381374	1272.7482	0.63581	0.00040526	-0.098577	-6.2831E-05	0.53724	0.00034243	637.3811818937882	73.312	0.79015	73.283	72.98	73.77	-0.029305					87	28	4	0	0	0	0.15851	4	18681	18681;18726;18777;18828		34.932	10.911	1	1263600			52483	6494	30001	30002	64287;64288;64289;64290	64287					0.12273181164823654
VILRDLFHF	9	Unmodified	_VILRDLFHF_					0	0	0		LAMC1|p.C916Vfs*123|1|0.4|ENSG00000135862|chr1:183125494-183125494|C/-|frameshift_variant	LAMC1|p.C916Vfs*123|1|0.4|ENSG00000135862|chr1:183125494-183125494|C/-|frameshift_variant	LAMC1|p.C916Vfs*123|1|0.4|ENSG00000135862|chr1:183125494-183125494|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3351440429688	2	580.334759	1158.65496	0.48551	0.00028176	-0.32812	-0.00019042	0.15739	9.1341E-05	580.3352388400133	58.691	2.7441	58.676	58.169	60.913	-0.014267					295	98	6	0	0	0	0.11461	2	14309	14309;14449		36.127	5.4905	1	61730000			52484	12501	30002	30003	64291;64292	64291					0.08198301502284266
VILTELLNALT	11	Unmodified	_VILTELLNALT_					0	0	0			REV__nc|ENSG00000109163|P30968-2|GNRHR	REV__nc|ENSG00000109163|P30968-2|GNRHR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	400.5804748535156	3	400.579706	1198.71729	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.63	1	103.64	103.14	104.14	0.0082703								0	0	0	0.37382	1	27538	27538		1.2148	0	1		+		52485	14632	30003	30004	64293	64293					0.1258798305993878
VIMFLKQIW	9	Unmodified	_VIMFLKQIW_					0	0	0		nc|ENSG00000134343|Q9BYT9-2|ANO3;ENSG00000134343|ENST00000256737|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	nc|ENSG00000134343|Q9BYT9-2|ANO3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.343017578125	2	589.343738	1176.67292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.28	1	113.3	112.8	113.8	0.014824								0	0	0	0.26704	1	29476	29476		0.6015	0	1				52486	3777	30004	30005	64294	64294					0.0916530043275543
VIMMPFQF	8	Unmodified	_VIMMPFQF_					0	0	0		ENSG00000080573|ENST00000264828|COL5A3;COL5A3|p.P1369Hfs*25|1|0.28|ENSG00000080573|chr19:9969395-9969396|-/GT|frameshift_variant	ENSG00000080573|ENST00000264828|COL5A3	ENSG00000080573|ENST00000264828|COL5A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.28436279296875	2	506.753367	1011.49218	0.13403	6.7922E-05	1.6966	0.00085973	1.8306	0.00092766	506.75428416688385	52.413	0.45876	52.412	52.09	52.548	-0.00080872					28	16	2	0	0	0	0.32778	1	12231	12231		9.3474	0	1	286190			52487	1160	30005	30006	64295	64295					-0.013105412155823615
VIMNSLITK	9	Oxidation (M)	_VIM(Oxidation (M))NSLITK_		VIM(1)NSLITK		VIM(120)NSLITK	0	0	1		nc|ENSG00000122203|Q96A73-2|KIAA1191;ENSG00000122203|ENST00000298569|KIAA1191	nc|ENSG00000122203|Q96A73-2|KIAA1191	nc|ENSG00000122203|Q96A73-2|KIAA1191	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7996215820312	2	517.79936	1033.58417	0.53842	0.00027879	0.61143	0.0003166	1.1498	0.00059539	517.7994604423421	34.15	0.6349	34.15	33.865	34.5	0					47	22	3	0	0	0	0.00072704	1	6688	6688		117.84	28.884	1	634110			52488	3033	30006	30007	64296	64296		379			0.06871840402436646
VIMNSLITK	9	Oxidation (M)	_VIM(Oxidation (M))NSLITK_		VIM(1)NSLITK		VIM(110)NSLITK	0	0	1		nc|ENSG00000122203|Q96A73-2|KIAA1191;ENSG00000122203|ENST00000298569|KIAA1191	nc|ENSG00000122203|Q96A73-2|KIAA1191	nc|ENSG00000122203|Q96A73-2|KIAA1191	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7996826171875	2	517.79936	1033.58417	0.56751	0.00029386	0.29291	0.00015167	0.86042	0.00044553	517.7993613038158	34.001	0.72744	34.068	33.786	34.513	0.06636					55	25	3	0	0	0	0.0036476	1	6650	6650		114.5	35.769	1	615260			52489	3033	30006	30007	64297	64297		379			0.06871840402436646
VINAAFMLL	9	Oxidation (M)	_VINAAFM(Oxidation (M))LL_		VINAAFM(1)LL		VINAAFM(85)LL	0	0	1		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF;nc|ENSG00000065609|O60641-3|SNAP91;SNAP91|p.G675Vfs*11|1|0.41|ENSG00000065609|chr6:83582347-83582347|C/-|frameshift_variant;nc|ENSG00000065609|O60641-4|SNAP91;ENSG00000065609|ENST00000369694|SNAP91	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2828674316406	2	504.283346	1006.55214	0.3564	0.00017973	-0.45112	-0.00022749	-0.094719	-4.7765E-05	504.2829102847853	79.72	1.0054	79.72	79.289	80.294	0					109	37	4	0	0	0	0.0061338	3	20769	20631;20769;20805		85.357	29.193	1	1997300			52490	1009	30007	30008	64298;64299;64300	64299		123			0.0491247271930888
VINAAFMLL	9	Oxidation (M)	_VINAAFM(Oxidation (M))LL_		VINAAFM(1)LL		VINAAFM(74)LL	0	0	1		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF;nc|ENSG00000065609|O60641-3|SNAP91;SNAP91|p.G675Vfs*11|1|0.41|ENSG00000065609|chr6:83582347-83582347|C/-|frameshift_variant;nc|ENSG00000065609|O60641-4|SNAP91;ENSG00000065609|ENST00000369694|SNAP91	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2830505371094	2	504.283346	1006.55214	0.36224	0.00018267	-0.54588	-0.00027528	-0.18363	-9.2603E-05	504.2829006787284	79.652	1.2156	79.714	79.273	80.489	0.061417					113	47	4	0	0	0	0.013258	1	20735	20735		74.423	26.077	1	2314000			52491	1009	30007	30008	64301	64301		123			0.0491247271930888
VINAAFMLL	9	Oxidation (M)	_VINAAFM(Oxidation (M))LL_		VINAAFM(1)LL		VINAAFM(140)LL	0	0	1		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-4|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF;nc|ENSG00000065609|O60641-3|SNAP91;SNAP91|p.G675Vfs*11|1|0.41|ENSG00000065609|chr6:83582347-83582347|C/-|frameshift_variant;nc|ENSG00000065609|O60641-4|SNAP91;ENSG00000065609|ENST00000369694|SNAP91	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2833251953125	2	504.283346	1006.55214	0.39574	0.00019957	-0.49282	-0.00024852	-0.097075	-4.8953E-05	504.2828857015745	79.722	1.1098	79.693	79.327	80.437	-0.028923					102	40	4	0	0	0	0.00012008	4	20712	20655;20712;20758;20790		137.59	29.193	1	2039800			52492	1009	30007	30008	64302;64303;64304;64305	64303		123			0.0491247271930888
VINGRTKAMVA	11	Unmodified	_VINGRTKAMVA_					0	0	0		nc|ENSG00000269858|Q96KS0-2|EGLN2;ENSG00000269858|ENST00000303961|EGLN2	nc|ENSG00000269858|Q96KS0-2|EGLN2	nc|ENSG00000269858|Q96KS0-2|EGLN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3338012695312	2	580.334433	1158.65431	0.34253	0.00019878	0.42151	0.00024462	0.76405	0.0004434	580.3353113866086	58.497	2.9197	58.589	58.168	61.088	0.091301					309	104	6	0	0	0	0.39234	1	14597	14597		12.241	0	1	53172000			52493	8694	30008	30009	64306	64306					0.08133138790913108
VINKEYKI	8	Unmodified	_VINKEYKI_					0	0	0		ENST00000502424.1_1_5:14797477-14798464:-|nuORF	ENST00000502424.1_1_5:14797477-14798464:-|nuORF	ENST00000502424.1_1_5:14797477-14798464:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.8004455566406	2	503.800217	1005.58588	0.31669	0.00015955	0.11174	5.6293E-05	0.42843	0.00021584	503.8001060906428	51.796	0.73073	51.796	51.536	52.267	0					62	26	3	0	0	0	0.32886	1	12141	12141		21.747	3.6117	1	1386500			52494	11274	30009	30010	64307	64307					0.08331217482702868
VINKKQLQL	9	Unmodified	_VINKKQLQL_					0	0	0		NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant;nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1;ENST00000470316.5_1_7:151049232-151057334:+|nuORF	NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant	NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.3482055664062	2	542.347866	1082.68118	0.67985	0.00036871	-0.17587	-9.5384E-05	0.50397	0.00027333	542.3476713773425	29.317	0.71128	29.317	29.089	29.801	0					58	25	3	0	0	0	0.0033114	2	5231	5231;5283		99.799	41.12	1	494400			52495	462	30010	30011	64308;64309	64308					0.14314570673764138
VINKKQLQL	9	Unmodified	_VINKKQLQL_					0	0	0		NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant;nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1;ENST00000470316.5_1_7:151049232-151057334:+|nuORF	NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant	NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.34814453125	2	542.347866	1082.68118	0.55376	0.00030033	0.042118	2.2843E-05	0.59587	0.00032317	542.3478270098796	29.285	0.72126	29.298	29.053	29.774	0.012266					55	24	3	0	0	0	0.0028127	2	5206	5206;5259		103.75	46.277	1	483110			52496	462	30010	30011	64310;64311	64310					0.14314570673764138
VINKKQLQL	9	Unmodified	_VINKKQLQL_					0	0	0		NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant;nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENSG00000013374|ENST00000568733|NUB1;ENST00000470316.5_1_7:151049232-151057334:+|nuORF	NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant	NUB1|p.R215Sfs*9|1|0.03|ENSG00000013374|chr7:151355922-151355923|-/TCCATTTTCTATGTTAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3482055664062	2	542.347866	1082.68118	0.40101	0.00021749	0.2196	0.0001191	0.62061	0.00033659	542.347915266439	29.333	0.73705	29.347	29.113	29.85	0.013475					56	25	4	0	0	0	0.00056175	2	5225	5225;5280		128.37	61.022	1	558970			52497	462	30010	30011	64312;64313	64312					0.14314570673764138
VINPKGERR	9	Unmodified	_VINPKGERR_					0	0	0		nc|ENSG00000078295|Q08462-2|ADCY2;ENSG00000078295|ENST00000338316|ADCY2	nc|ENSG00000078295|Q08462-2|ADCY2	nc|ENSG00000078295|Q08462-2|ADCY2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.8082885742188	2	534.817264	1067.61998	0.48183	0.00025769	1.0181	0.00054449	1.4999	0.00080218	534.8180989896426	62.213	0.9544	62.204	62.008	62.963	-0.0085526					53	35	2	0	0	0	0.25622	1	15512	15512		1.6526	0	1	187010			52498	1108	30011	30012	64314	64314					0.08887058694313055
VINRLTNQ	8	Unmodified	_VINRLTNQ_					0	0	0			REV__ENSG00000142556|ENST00000270649|ZNF614	REV__ENSG00000142556|ENST00000270649|ZNF614	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2773742675781	2	479.277441	956.540328	0.25052	0.00012007	-0.092943	-4.4546E-05	0.15758	7.5525E-05	479.27726181960276	71.971	1.9573	71.971	71.233	73.191	0					154	70	3	0	0	0	0.4419	1	18379	18379		8.5933	0	1	959500	+		52499	16126	30012	30013	64315	64315					0.06031992020302823
VINRLTNQ	8	Unmodified	_VINRLTNQ_					0	0	0			REV__ENSG00000142556|ENST00000270649|ZNF614	REV__ENSG00000142556|ENST00000270649|ZNF614	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2774658203125	2	479.277441	956.540328	0.32241	0.00015452	-0.065257	-3.1276E-05	0.25715	0.00012325	479.2772482615654	71.811	1.9108	71.867	71.319	73.23	0.056572					209	69	4	0	0	0	0.45307	1	18357	18357		4.756	0	1	952830	+		52500	16126	30012	30013	64316	64316					0.06031992020302823
VINRLTNQ	8	Unmodified	_VINRLTNQ_					0	0	0			REV__ENSG00000142556|ENST00000270649|ZNF614	REV__ENSG00000142556|ENST00000270649|ZNF614	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2773742675781	2	479.277441	956.540328	0.39285	0.00018828	-0.28276	-0.00013552	0.11009	5.2763E-05	479.2772159021679	75.409	1.3658	75.378	75.005	76.37	-0.031487					98	50	2	0	0	0	0.4419	1	19436	19436		8.5933	0	1	2627700	+		52501	16126	30012	30013	64317	64317					0.06031992020302823
VINRSPHYLL	10	Unmodified	_VINRSPHYLL_					0	0	0		nc|ENSG00000144278|Q8IUC8-2|GALNT13;ENSG00000144278|ENST00000392825|GALNT13;nc|ENSG00000144278|Q8IUC8-3|GALNT13	nc|ENSG00000144278|Q8IUC8-2|GALNT13	nc|ENSG00000144278|Q8IUC8-2|GALNT13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.36962890625	2	606.348397	1210.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.55	1	110.55	110.05	111.05	0								0	0	0	0.38126	1	28825	28825		1.6526	0.32309	1				52502	4571	30013	30014	64318	64318					0.08532785042666546
VINRSPHYLL	10	Unmodified	_VINRSPHYLL_					0	0	0		nc|ENSG00000144278|Q8IUC8-2|GALNT13;ENSG00000144278|ENST00000392825|GALNT13;nc|ENSG00000144278|Q8IUC8-3|GALNT13	nc|ENSG00000144278|Q8IUC8-2|GALNT13	nc|ENSG00000144278|Q8IUC8-2|GALNT13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3701782226562	2	606.348397	1210.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.82	1	108.83	108.33	109.33	0.0083618								0	0	0	0.37581	1	28577	28577		3.9444	1.8846	1				52503	4571	30013	30014	64319	64319					0.08532785042666546
VINYLWVFVI	10	Unmodified	_VINYLWVFVI_					0	0	0			REV__ENSG00000175893|ENST00000380916|ZDHHC21	REV__ENSG00000175893|ENST00000380916|ZDHHC21	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.369384765625	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.51	1	112.51	112.01	113.01	0								0	0	0	0.38202	1	29244	29244		0.40072	0	1		+		52504	17912	30014	30015	64320	64320					0.10020911993365189
VINYLWVFVI	10	Unmodified	_VINYLWVFVI_					0	0	0			REV__ENSG00000175893|ENST00000380916|ZDHHC21	REV__ENSG00000175893|ENST00000380916|ZDHHC21	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3689575195312	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.39	1	114.4	113.9	114.9	0.016708								0	0	0	0.38202	1	29746	29746		0.40072	0	1		+		52505	17912	30014	30015	64321	64321					0.10020911993365189
VIPDSPIT	8	Unmodified	_VIPDSPIT_					0	0	0		nc|ENSG00000101773|Q99708-3|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.9273986816406	2	421.236919	840.459284	0.083364	3.5116E-05	1.4333	0.00060378	1.5167	0.00063889	421.237765221082	36.595	0.42827	36.595	36.447	36.875	0					25	14	3	0	0	0	0.34046	1	7440	7440		5.2307	0.47466	1	92703			52506	12623	30015	30016	64322	64322					0.032672912575776536
VIPLNKETEKI	11	Unmodified	_VIPLNKETEKI_					0	0	0		ENST00000377027.1_1_9:74533369-74587755:+|nuORF;ENSG00000155621|ENST00000334731|C9orf85	ENST00000377027.1_1_9:74533369-74587755:+|nuORF	ENST00000377027.1_1_9:74533369-74587755:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3838500976562	2	642.382103	1282.74965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.47	1	101.46	100.96	101.96	-0.0054703								0	0	0	0.36839	1	27087	27087		4.1895	1.1943	1				52507	5184	30016	30017	64323	64323					0.11958770462911161
VIPQVMVK	8	Unmodified	_VIPQVMVK_					0	0	0			REV__ENST00000483099.5_1_1:203830787-203830865:+|nuORF	REV__ENST00000483099.5_1_1:203830787-203830865:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.608154296875	2	457.280606	912.546659	0.18012	8.2363E-05	1.7508	0.00080062	1.9309	0.00088299	457.2806737839874	90.846	1.8609	90.936	89.122	90.983	0.090668					169	136	2	0	0	0	0.34247	1	24027	24027		8.5933	0	1	312070	+		52508	21516	30017	30018	64324	64324					0.08688793927490224
VIPQVMVK	8	Unmodified	_VIPQVMVK_					0	0	0			REV__ENST00000483099.5_1_1:203830787-203830865:+|nuORF	REV__ENST00000483099.5_1_1:203830787-203830865:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.6081848144531	2	457.280606	912.546659	0.28841	0.00013189	1.4971	0.00068457	1.7855	0.00081646	457.28067886274766	90.803	1.8481	90.803	89.161	91.009	0.00039673					177	140	2	0	0	0	0.34247	1	24067	24067		8.5933	0	1	377860	+		52509	21516	30017	30018	64325	64325					0.08688793927490224
VIPSAAAPI	9	Unmodified	_VIPSAAAPI_					0	0	0		ENSG00000104901|ENST00000221498|DKKL1	ENSG00000104901|ENST00000221498|DKKL1	ENSG00000104901|ENST00000221498|DKKL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.7551574707031	2	419.755278	837.496004	0.010315	4.3297E-06	0.81397	0.00034167	0.82429	0.000346	419.75506483175	62.683	0.77618	62.683	62.341	63.117	0					43	28	2	0	0	0	0.20344	1	15492	15492		23.148	0	1	221890			52510	1933	30018	30019	64326	64326					0.07075587874123812
VIPSAAAPI	9	Unmodified	_VIPSAAAPI_					0	0	0		ENSG00000104901|ENST00000221498|DKKL1	ENSG00000104901|ENST00000221498|DKKL1	ENSG00000104901|ENST00000221498|DKKL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	419.755278	837.496004	0.16729	7.0221E-05	0.91178	0.00038273	1.0791	0.00045295	419.7551032957617	62.57	0.62598	62.667	62.442	63.068	0.096985	-0.010682	-5.3832E-05	NaN	23.148	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228200			52511	1933	30018	30019							0.07075587874123812
VIPSAAAPI	9	Unmodified	_VIPSAAAPI_					0	0	0		ENSG00000104901|ENST00000221498|DKKL1	ENSG00000104901|ENST00000221498|DKKL1	ENSG00000104901|ENST00000221498|DKKL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	419.755278	837.496004	0.10349	4.3441E-05	1.2347	0.00051828	1.3382	0.00056172	419.75507659072224	62.692	1.0709	62.683	62.094	63.165	-0.0085526	0.005305	0.00021728	NaN	23.148	54	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172880			52512	1933	30018	30019							0.07075587874123812
VIPSGIIKTI	10	Unmodified	_VIPSGIIKTI_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-2|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7926025390625	2	520.839342	1039.66413	0.3212	0.00016729	-3.2516	-0.0016935	-2.9304	-0.0015263	520.8389758768095	73.389	0.49825	73.389	73.163	73.661	0					27	17	2	0	0	0	0.31267	1	18795	18795		14.838	3.198	1	94835			52513	5305	30019	30020	64327	64327					0.14588650067935305
VIPVRIHTI	9	Unmodified	_VIPVRIHTI_					0	0	0		ENSG00000151224|ENST00000372213|MAT1A	ENSG00000151224|ENST00000372213|MAT1A	ENSG00000151224|ENST00000372213|MAT1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.3194580078125	2	524.337301	1046.66005	0.39548	0.00020736	-0.17008	-8.9179E-05	0.2254	0.00011818	524.3369809871483	43.097	0.68321	43.181	42.92	43.604	0.083996					62	24	4	0	0	0	0.057976	1	9461	9461		49.933	0	1	1286700			52514	4945	30020	30021	64328	64328					0.1385860536488508
VIQDPVPQF	9	Unmodified	_VIQDPVPQF_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;nc|ENSG00000075275|Q9NYQ6-2|CELSR1;CELSR1|p.N1011Tfs*72|1|0.23|ENSG00000075275|chr22:46534139-46534139|T/-|frameshift_variant	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.657470703125	2	521.782025	1041.5495	0.36348	0.00018966	-0.22999	-0.00012001	0.13349	6.9652E-05	521.7822975031943	49.476	0.55714	49.521	49.293	49.85	0.044888					29	20	2	0	0	0	0.24311	1	11381	11381		7.2892	0	1	838020			52515	1042	30021	30022	64329	64329					0.030383405859765844
VIQKHQTI	8	Unmodified	_VIQKHQTI_					0	0	0			REV__nc|ENSG00000087087|Q9BXP5-5|SRRT	REV__nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.766357421875	2	483.790184	965.565815	-0.15606	-7.5499E-05	-1.328	-0.00064248	-1.4841	-0.00071798	483.7895541183502	38.807	0.38464	38.807	38.546	38.931	0					24	13	3	0	0	0	0.34131	1	8119	8119		12.532	0	1	110200	+		52516	13986	30022	30023	64330	64330					0.08165466542754984
VIQKHQTI	8	Unmodified	_VIQKHQTI_					0	0	0			REV__nc|ENSG00000087087|Q9BXP5-5|SRRT	REV__nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.76629638671875	2	483.790184	965.565815	0.21476	0.0001039	-1.6814	-0.00081345	-1.4666	-0.00070955	483.7895860967567	38.719	0.3546	38.81	38.647	39.001	0.090881					18	12	2	0	0	0	0.3366	1	8090	8090		18.135	5.6034	1	123560	+		52517	13986	30022	30023	64331	64331					0.08165466542754984
VIQKLAAKY	9	Unmodified	_VIQKLAAKY_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF;ENST00000533635.5_1_11:6587803-6591461:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7353515625	2	517.32386	1032.63317	0.26938	0.00013936	-0.57094	-0.00029536	-0.30156	-0.00015601	517.3233155606886	48.992	2.2254	49.024	48.632	50.857	0.032043					99	81	2	0	0	0	0.24913	1	11609	11609		12.532	0.89125	1	319530			52518	7128	30023	30024	64332	64332					0.11815496753706611
VIQKRSVN	8	Unmodified	_VIQKRSVN_					0	0	0		ENST00000351004.7_1_7:79818413-79818518:+|nuORF	ENST00000351004.7_1_7:79818413-79818518:+|nuORF	ENST00000351004.7_1_7:79818413-79818518:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2749938964844	2	472.287808	942.561064	0.44252	0.000209	-0.9204	-0.00043469	-0.47788	-0.0002257	472.2871160681627	84.969	2.3886	84.956	84.516	86.904	-0.012833					207	93	4	0	0	0	0.46022	1	22706	22706		2.3027	0	1	10825000			52519	9576	30024	30025	64333	64333					0.0874858239999412
VIRDWLLN	8	Unmodified	_VIRDWLLN_					0	0	0		nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF	nc|ENSG00000152223|Q9HCE0-2|EPG5	nc|ENSG00000152223|Q9HCE0-2|EPG5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7982788085938	2	514.798009	1027.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.406	1	57.492	56.992	57.992	0.085621								0	0	0	0.34229	1	13847	13847		18.135	0	1				52520	5007	30025	30026	64334	64334					0.06877753059802671
VIRKTIHESKG	11	Unmodified	_VIRKTIHESKG_					0	0	0		ENSG00000187753|ENST00000339137|C9orf153	ENSG00000187753|ENST00000339137|C9orf153	ENSG00000187753|ENST00000339137|C9orf153	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3777465820312	2	634.377686	1266.74082	-0.065487	-4.1543E-05	0.0098966	6.2782E-06	-0.05559	-3.5265E-05	634.377935476657	103.22	0.64703	103.22	102.87	103.51	0					264	93	4	0	0	0	0.44192	3	27386	27386;27419;27449		5.7319	0.83484	1	46142000			52521	7706	30026	30027	64335;64336;64337	64335					0.11811841617122809
VIRKTIHESKG	11	Unmodified	_VIRKTIHESKG_					0	0	0		ENSG00000187753|ENST00000339137|C9orf153	ENSG00000187753|ENST00000339137|C9orf153	ENSG00000187753|ENST00000339137|C9orf153	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3784790039062	2	634.377686	1266.74082	-0.065239	-4.1386E-05	-0.10892	-6.9098E-05	-0.17416	-0.00011048	634.3778659788805	103.61	1.2562	103.61	103.51	104.77	0					365	174	4	0	0	0	0.44192	2	27503	27503;27532		5.7319	0.83484	1	44719000			52522	7706	30026	30027	64338;64339	64338					0.11811841617122809
VIRKTIHESKG	11	Unmodified	_VIRKTIHESKG_					0	0	0		ENSG00000187753|ENST00000339137|C9orf153	ENSG00000187753|ENST00000339137|C9orf153	ENSG00000187753|ENST00000339137|C9orf153	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3778076171875	2	634.377686	1266.74082	0.22787	0.00014455	-0.18084	-0.00011472	0.047024	2.9831E-05	634.3777797867066	103.27	1.9164	103.27	102.78	104.7	0.0082703					426	271	3	0	0	0	0.44192	3	27442	27442;27498;27527		5.7319	2.1354	1	38547000			52523	7706	30026	30027	64340;64341;64342	64340					0.11811841617122809
VIRNYSLLL	9	Unmodified	_VIRNYSLLL_					0	0	0			REV__nc|ENSG00000239732|Q9NR96-2|TLR9	REV__nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8345336914062	2	545.834591	1089.65463	0.75575	0.00041252	-0.23597	-0.0001288	0.51979	0.00028372	545.8341513684668	64.537	0.59944	64.63	64.363	64.962	0.09288					48	21	3	0	0	0	0.18123	1	16061	16061		34.402	3.1334	1	664320	+		52524	19164	30027	30028	64343	64343					0.11338881782421595
VIRVGHKA	8	Unmodified	_VIRVGHKA_					0	0	0			REV__nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8	REV__nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.2895202636719	2	440.279786	878.54502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.664	1	27.643	27.143	28.143	-0.021412								0	0	0	0.37078	1	4728	4728		5.2307	0	1		+		52525	19228	30028	30029	64344	64344					0.10088920953751312
VIRVHMSD	8	Unmodified	_VIRVHMSD_					0	0	0		nc|ENSG00000173166|Q70E73-5|RAPH1;nc|ENSG00000173166|Q70E73-2|RAPH1;nc|ENSG00000173166|Q70E73-8|RAPH1;nc|ENSG00000173166|Q70E73-7|RAPH1;nc|ENSG00000173166|Q70E73-4|RAPH1;nc|ENSG00000173166|Q70E73-3|RAPH1;nc|ENSG00000173166|Q70E73-9|RAPH1;nc|ENSG00000173166|Q70E73-6|RAPH1;ENSG00000173166|ENST00000319170|RAPH1	nc|ENSG00000173166|Q70E73-5|RAPH1	nc|ENSG00000173166|Q70E73-5|RAPH1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7369384765625	2	478.752744	955.490935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.534	1	79.595	79.095	80.095	0.061417								0	0	0	0.35985	1	20618	20618		10.183	0	1				52526	6697	30029	30030	64345	64345					0.011409607398718435
VIRVYRAI	8	Unmodified	_VIRVYRAI_					0	0	0			REV__ENSG00000174469|ENST00000361727|CNTNAP2	REV__ENSG00000174469|ENST00000361727|CNTNAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7664489746094	2	495.316369	988.618185	0.5852	0.00028986	0.50504	0.00025015	1.0902	0.00054001	495.3164783557729	48.741	1.151	48.786	48.47	49.621	0.044888					77	41	3	0	0	0	0.34337	1	11430	11430		2.3027	0	1	1159300	+		52527	17836	30030	30031	64346	64346					0.12342049676362876
VISAPPLPLR	10	Unmodified	_VISAPPLPLR_					0	0	0		ENST00000284320.5_1_3:100119782-100120241:-|nuORF	ENST00000284320.5_1_3:100119782-100120241:-|nuORF	ENST00000284320.5_1_3:100119782-100120241:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8370361328125	2	531.837134	1061.65972	0.73355	0.00039013	-0.26631	-0.00014163	0.46724	0.0002485	531.8368812364447	55.122	0.47777	55.103	54.842	55.319	-0.019081					21	17	2	0	0	0	0.15473	1	13143	13143		38.176	20.029	1	411620			52528	9138	30031	30032	64347	64347					0.1313518564502374
VISAPPLPLR	10	Unmodified	_VISAPPLPLR_					0	0	0		ENST00000284320.5_1_3:100119782-100120241:-|nuORF	ENST00000284320.5_1_3:100119782-100120241:-|nuORF	ENST00000284320.5_1_3:100119782-100120241:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.837134	1061.65972	0.66809	0.00035532	-0.52631	-0.00027991	0.14179	7.5407E-05	531.8368605675143	55.229	0.45669	55.229	54.974	55.431	0	0.063191	-0.00012671	NaN	38.176	26	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270570			52529	9138	30031	30032							0.1313518564502374
VISDADKNPNF	11	Unmodified	_VISDADKNPNF_					0	0	0			REV__ENSG00000198822|ENST00000361669|GRM3	REV__ENSG00000198822|ENST00000361669|GRM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.20361328125	3	407.203299	1218.58807	-0.14649	-5.9653E-05	0.72276	0.00029431	0.57627	0.00023466	407.2037065356985	17.753	0.97103	17.753	17.272	18.243	0					90	33	4	0	0	0	0.30475	1	1705	1705		21.799	11.484	1	649810	+		52530	18868	30032	30033	64348	64348					-0.012483985701464917
VISDADKNPNF	11	Unmodified	_VISDADKNPNF_					0	0	0			REV__ENSG00000198822|ENST00000361669|GRM3	REV__ENSG00000198822|ENST00000361669|GRM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.20367431640625	3	407.203299	1218.58807	-0.2125	-8.6532E-05	0.74021	0.00030142	0.52771	0.00021489	407.20378097608074	17.954	1.1516	17.837	17.289	18.44	-0.11739					101	39	5	0	0	0	0.38765	1	1802	1802		12.856	3.312	1	727020	+		52531	18868	30032	30033	64349	64349					-0.012483985701464917
VISDADKNPNF	11	Unmodified	_VISDADKNPNF_					0	0	0			REV__ENSG00000198822|ENST00000361669|GRM3	REV__ENSG00000198822|ENST00000361669|GRM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.2037658691406	3	407.203299	1218.58807	-0.2125	-8.6532E-05	0.74021	0.00030142	0.52771	0.00021489	407.20378097608074	17.954	1.1516	17.837	17.289	18.44	-0.11739					101	39	5	0	0	0	0.32563	1	1753	1753		17.049	7.8048	1	727020	+		52532	18868	30032	30033	64350	64350					-0.012483985701464917
VISDADKNPNF	11	Unmodified	_VISDADKNPNF_					0	0	0			REV__ENSG00000198822|ENST00000361669|GRM3	REV__ENSG00000198822|ENST00000361669|GRM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2034912109375	3	407.203299	1218.58807	-0.17942	-7.3059E-05	0.90259	0.00036754	0.72317	0.00029448	407.20377003682256	17.918	1.0719	17.857	17.298	18.37	-0.060429					97	37	4	0	0	0	0.32824	1	1746	1746		12.856	4.4116	1	702370	+		52533	18868	30032	30033	64351	64351					-0.012483985701464917
VISEHLGL	8	Unmodified	_VISEHLGL_					0	0	0		nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-11|ANK1;ENST00000524227.5_1_8:41525962-41555361:-|nuORF	nc|ENSG00000029534|P16157-14|ANK1	nc|ENSG00000029534|P16157-14|ANK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.5674743652344	2	434.25036	866.486168	0.023701	1.0292E-05	-0.70888	-0.00030783	-0.68518	-0.00029754	434.2499665713289	49.536	0.73286	49.536	49.135	49.868	0					33	26	2	0	0	0	0.34218	1	11370	11370		9.3474	0	1	136980			52534	547	30033	30034	64352	64352					0.04758399868762808
VISEHLGL	8	Unmodified	_VISEHLGL_					0	0	0		nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-8|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-11|ANK1;ENST00000524227.5_1_8:41525962-41555361:-|nuORF	nc|ENSG00000029534|P16157-14|ANK1	nc|ENSG00000029534|P16157-14|ANK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.5675048828125	2	434.25036	866.486168	-0.046949	-2.0388E-05	-0.45007	-0.00019544	-0.49702	-0.00021583	434.2500828530948	49.517	0.69246	49.562	49.184	49.877	0.044891					37	25	2	0	0	0	0.34092	1	11392	11392		8.5933	0	1	142560			52535	547	30033	30034	64353	64353					0.04758399868762808
VISPDEHSCLL	11	Unmodified	_VISPDEHSCLL_					0	0	0			REV__ENSG00000117501|ENST00000367759|MROH9	REV__ENSG00000117501|ENST00000367759|MROH9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2276306152344	3	404.869151	1211.58562	-0.0053143	-2.1516E-06	-1.9051	-0.00077133	-1.9105	-0.00077349	404.8683697941672	45.216	0.35042	45.216	45.015	45.366	0					20	12	2	0	0	0	0.3259	1	10067	10067		7.4771	0.85361	1	158820	+		52536	14973	30034	30035	64354	64354					-0.011705702994731837
VISYSYIL	8	Unmodified	_VISYSYIL_					0	0	0			REV__ENSG00000187492|ENST00000412678|CDHR4	REV__ENSG00000187492|ENST00000412678|CDHR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.27752685546875	2	479.268219	956.521884	0.49517	0.00023732	-4.1896	-0.0020079	-3.6944	-0.0017706	479.26742895089507	77.469	0.77731	77.469	77.228	78.005	0					49	28	3	0	0	0	0.30517	1	20001	20001		30.225	0	1	125010	+		52537	18505	30035	30036	64355	64355					0.04188437325751693
VISYSYIL	8	Unmodified	_VISYSYIL_					0	0	0			REV__ENSG00000187492|ENST00000412678|CDHR4	REV__ENSG00000187492|ENST00000412678|CDHR4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2773132324219	2	479.268219	956.521884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.494	1	77.463	76.963	77.963	-0.031334								0	0	0	0.23984	1	19990	19990		38.151	0	1		+		52538	18505	30035	30036	64356	64356					0.04188437325751693
VITEPHADI	9	Unmodified	_VITEPHADI_					0	0	0			REV__nc|ENSG00000100605|Q13572-2|ITPK1	REV__nc|ENSG00000100605|Q13572-2|ITPK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7876892089844	2	497.763832	993.513111	0.53171	0.00026466	-1.5125	-0.00075285	-0.98075	-0.00048818	497.76387285159853	36.396	0.1636	36.479	36.398	36.561	0.082359					8	5	2	0	0	0	0.25417	1	7400	7400		8.5933	3.8373	1	63420	+		52539	14213	30036	30037	64357	64357					0.01609463689283075
VITIGIPFP	9	Unmodified	_VITIGIPFP_					0	0	0		nc|ENSG00000136492|Q9BX63-2|BRIP1;ENSG00000136492|ENST00000259008|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	nc|ENSG00000136492|Q9BX63-2|BRIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7856140136719	2	478.794404	955.574254	0.2444	0.00011702	0.21575	0.0001033	0.46015	0.00022032	478.7943984069381	82.172	0.65495	82.172	82.024	82.679	0					42	23	2	0	0	0	0.19839	1	21467	21467		21.747	0	1	676220			52540	3978	30037	30038	64358	64358					0.09469020459380317
VITLLNELKRR	11	Unmodified	_VITLLNELKRR_					0	0	0		ENST00000469559.5_1_3:38167054-38167382:-|nuORF;ENST00000469600.1_1_3:38164540-38167382:-|nuORF;ENST00000411549.5_1_3:38164540-38167863:-|nuORF;nc|ENSG00000060971|P09110-2|ACAA1;ENSG00000060971|ENST00000333167|ACAA1	ENST00000469559.5_1_3:38167054-38167382:-|nuORF	ENST00000469559.5_1_3:38167054-38167382:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.76861572265625	3	452.289149	1353.84562	-0.17317	-7.8323E-05	-0.51011	-0.00023072	-0.68328	-0.00030904	452.288888509479	12.75	0.44611	12.75	12.612	13.058	0					42	15	4	0	0	0	0.33351	1	276	276		0.094841	0	1	285960			52541	755	30038	30039	64359	64359					0.1828496309365164
VITPEDLLFL	10	Unmodified	_VITPEDLLFL_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8023071289062	2	580.33409	1158.65363	0.22799	0.00013231	0.11089	6.4354E-05	0.33888	0.00019666	580.3339413373134	64.855	1.4486	64.855	64.212	65.66	0					77	52	2	0	0	0	0.31358	1	16008	16008		13.906	5.9959	1	205480			52542	7845	30039	30040	64360	64360					0.08064622622850948
VITPVLLHF	9	Unmodified	_VITPVLLHF_					0	0	0		nc|ENSG00000175606|Q9BUB7-2|TMEM70;ENSG00000175606|ENST00000312184|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.8211059570312	2	519.820953	1037.62735	0.4668	0.00024265	0.050505	2.6254E-05	0.51731	0.00026891	519.8209306644171	73.03	1.3626	73.03	72.667	74.029	0					120	48	4	0	0	0	4.7555E-07	3	18640	18593;18640;18684		161.58	110.73	1	2595900			52543	6876	30040	30041	64361;64362;64363	64362					0.11004398242016578
VITPVLLHF	9	Unmodified	_VITPVLLHF_					0	0	0		nc|ENSG00000175606|Q9BUB7-2|TMEM70;ENSG00000175606|ENST00000312184|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.8211059570312	2	519.820953	1037.62735	0.31219	0.00016229	0.14011	7.2831E-05	0.4523	0.00023512	519.8209703407879	72.984	1.0899	73.038	72.707	73.797	0.053841					115	39	4	0	0	0	7.6375E-05	3	18621	18573;18621;18671		144.66	97.736	1	2602600			52544	6876	30040	30041	64364;64365;64366	64365					0.11004398242016578
VITPVLLHF	9	Unmodified	_VITPVLLHF_					0	0	0		nc|ENSG00000175606|Q9BUB7-2|TMEM70;ENSG00000175606|ENST00000312184|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.821044921875	2	519.820953	1037.62735	0.47058	0.00024462	-0.035273	-1.8336E-05	0.43531	0.00022628	519.8208844938276	73.05	1.1727	73.02	72.684	73.856	-0.029305					119	42	5	0	0	0	4.7555E-07	2	18630	18630;18675		161.58	110.73	1	2528100			52545	6876	30040	30041	64367;64368	64367					0.11004398242016578
VITRPLATF	9	Unmodified	_VITRPLATF_					0	0	0		ENSG00000122375|ENST00000241891|OPN4;nc|ENSG00000122375|Q9UHM6-2|OPN4	ENSG00000122375|ENST00000241891|OPN4	ENSG00000122375|ENST00000241891|OPN4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7763977050781	2	509.30821	1016.60187	0.57975	0.00029527	-0.76014	-0.00038715	-0.18039	-9.1875E-05	509.3079630694162	54.812	0.66844	54.876	54.54	55.209	0.063202					51	24	3	0	0	0	0.22596	1	13040	13040		21.747	0	1	1074000			52546	3039	30041	30042	64369	64369					0.09422923719603205
VITTISLGNLF	11	Unmodified	_VITTISLGNLF_					0	0	0			REV__ENSG00000177483|ENST00000316997|RBM44	REV__ENSG00000177483|ENST00000316997|RBM44	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.34130859375	2	589.344989	1176.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.89	1	115.91	115.41	116.41	0.018738								0	0	0	0.38114	1	30089	30089		1.3295	0	1		+		52547	17993	30042	30043	64370	64370					0.09415427371436635
VITTRRPT	8	Unmodified	_VITTRRPT_					0	0	0		ENST00000585403.5_1_17:40719643-40721531:+|nuORF	ENST00000585403.5_1_17:40719643-40721531:+|nuORF	ENST00000585403.5_1_17:40719643-40721531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.28662109375	2	472.287808	942.561064	0.31406	0.00014833	-0.97585	-0.00046088	-0.66179	-0.00031256	472.2870496322931	84.954	1.922	84.954	84.584	86.506	0					155	74	3	0	0	0	0.45307	3	22287	22287;22336;22385		4.756	0	1	9110500			52548	12103	30043	30044	64371;64372;64373	64371					0.08748582399982752
VITTRRPT	8	Unmodified	_VITTRRPT_					0	0	0		ENST00000585403.5_1_17:40719643-40721531:+|nuORF	ENST00000585403.5_1_17:40719643-40721531:+|nuORF	ENST00000585403.5_1_17:40719643-40721531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2866516113281	2	472.287808	942.561064	0.40263	0.00019016	-0.86193	-0.00040708	-0.4593	-0.00021692	472.2871541306637	84.897	2.017	84.978	84.501	86.518	0.080879					194	78	4	0	0	0	0.45307	3	22255	22255;22306;22353		4.756	0	1	9516300			52549	12103	30043	30044	64374;64375;64376	64374					0.08748582399982752
VITTRRPT	8	Unmodified	_VITTRRPT_					0	0	0		ENST00000585403.5_1_17:40719643-40721531:+|nuORF	ENST00000585403.5_1_17:40719643-40721531:+|nuORF	ENST00000585403.5_1_17:40719643-40721531:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2877502441406	2	472.287808	942.561064	0.44252	0.000209	-0.9204	-0.00043469	-0.47788	-0.0002257	472.2871160681627	84.969	2.3886	84.956	84.516	86.904	-0.012833					207	93	4	0	0	0	0.45307	2	22323	22323;22372		4.756	0	1	10825000			52550	12103	30043	30044	64377;64378	64377					0.08748582399982752
VIVAVVNVT	9	Unmodified	_VIVAVVNVT_					0	0	0			REV__nc|ENSG00000058668|P23634-5|ATP2B4;REV__nc|ENSG00000157087|Q01814-4|ATP2B2;REV__nc|ENSG00000067842|Q16720-6|ATP2B3;REV__nc|ENSG00000070961|P20020-6|ATP2B1	REV__nc|ENSG00000070961|P20020-6|ATP2B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7505798339844	2	457.289485	912.564418	0.3886	0.0001777	-0.091049	-4.1636E-05	0.29755	0.00013606	457.2893739720109	47.318	0.76051	47.318	46.873	47.634	0					53	26	3	0	0	0	0.24311	1	10789	10789		11.64	2.2929	1	661130	+		52551	22895;13609;16770;22892	30044	30045	64379	64379					0.10463832454001931
VIVKAKFF	8	Unmodified	_VIVKAKFF_					0	0	0		ENSG00000166441|ENST00000314138|RPL27A	ENSG00000166441|ENST00000314138|RPL27A	ENSG00000166441|ENST00000314138|RPL27A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7693176269531	2	476.304939	950.595324	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.008	1	74.008	73.508	74.508	0								0	0	0	0.37078	1	18944	18944		5.2307	2.9279	1				52552	6079	30045	30046	64380	64380					0.11805030558889484
VIVLEPKIL	9	Unmodified	_VIVLEPKIL_					0	0	0			REV__ENSG00000164743|ENST00000297324|C8orf48	REV__ENSG00000164743|ENST00000297324|C8orf48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.3444213867188	2	512.344261	1022.67397	0.31142	0.00015955	-0.14231	-7.291E-05	0.16912	8.6645E-05	512.3441088973588	68.191	0.3318	68.191	67.997	68.329	0					21	12	2	0	0	0	0.18803	1	17177	17177		25.399	1.3787	1	233580	+		52553	17178	30046	30047	64381	64381					0.16353838073314364
VIVLEPKIL	9	Unmodified	_VIVLEPKIL_					0	0	0			REV__ENSG00000164743|ENST00000297324|C8orf48	REV__ENSG00000164743|ENST00000297324|C8orf48	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2896728515625	2	512.344261	1022.67397	0.27204	0.00013938	-0.3076	-0.00015759	-0.035556	-1.8217E-05	512.343987017501	68.117	0.43875	68.195	67.975	68.414	0.078041					23	15	2	0	0	0	0.2451	1	17191	17191		15.847	3.3156	1	233510	+		52554	17178	30046	30047	64382	64382					0.16353838073314364
VIVLEPKIL	9	Unmodified	_VIVLEPKIL_					0	0	0			REV__ENSG00000164743|ENST00000297324|C8orf48	REV__ENSG00000164743|ENST00000297324|C8orf48	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.344482421875	2	512.344261	1022.67397	0.27685	0.00014184	-0.064039	-3.281E-05	0.21281	0.00010903	512.3442175864697	68.203	0.4069	68.184	67.938	68.345	-0.019157					22	14	2	0	0	0	0.18803	1	17168	17168		25.399	4.9457	1	221290	+		52555	17178	30046	30047	64383	64383					0.16353838073314364
VIVLEPKIL	9	Unmodified	_VIVLEPKIL_					0	0	0			REV__ENSG00000164743|ENST00000297324|C8orf48	REV__ENSG00000164743|ENST00000297324|C8orf48	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	512.344261	1022.67397	0.31142	0.00015955	-0.14231	-7.291E-05	0.16912	8.6645E-05	512.3441088973588	68.191	0.3318	68.191	67.997	68.329	0	0.0010291	-2.4242E-05	NaN	25.399	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233580	+		52556	17178	30046	30047							0.16353838073314364
VIVLEPKIL	9	Unmodified	_VIVLEPKIL_					0	0	0			REV__ENSG00000164743|ENST00000297324|C8orf48	REV__ENSG00000164743|ENST00000297324|C8orf48	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	512.344261	1022.67397	0.27685	0.00014184	-0.064039	-3.281E-05	0.21281	0.00010903	512.3442175864697	68.203	0.4069	68.184	67.938	68.345	-0.019157	-0.0061201	5.5957E-05	NaN	25.399	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221290	+		52557	17178	30046	30047							0.16353838073314364
VIVRRQLDGR	10	Unmodified	_VIVRRQLDGR_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.370849609375	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.65	1	109.65	109.15	110.15	0								0	0	0	0.38198	1	28675	28675		1.4819	0.15237	1				52558	6532	30047	30048	64384	64384					0.12890394539772387
VIVRRQLDGR	10	Unmodified	_VIVRRQLDGR_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3694458007812	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.29	1	110.29	109.79	110.79	0								0	0	0	0.38198	1	28782	28782		1.4819	0.95714	1				52559	6532	30047	30048	64385	64385					0.12890394539772387
VIVRRQLDGR	10	Unmodified	_VIVRRQLDGR_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3696899414062	2	606.370195	1210.72584	0.54971	0.00033333	-0.35687	-0.00021639	0.19284	0.00011693	606.3698124394905	86.859	2.3907	86.946	86.728	89.119	0.08709					235	111	4	0	0	0	0.4155	2	23302	23302;23418		1.4819	1.4819	1	1359800			52560	6532	30047	30048	64386;64387	64386					0.12890394539772387
VIVRRQLDGR	10	Unmodified	_VIVRRQLDGR_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3705444335938	2	606.370195	1210.72584	0.33067	0.00020051	-0.54869	-0.00033271	-0.21802	-0.0001322	606.3698808908536	97.439	0.50807	97.433	97.221	97.729	-0.0055466					73	53	2	0	0	0	0.4155	1	26099	26099		1.4819	0.95714	1	159730			52561	6532	30047	30048	64388	64388					0.12890394539772387
VIVRRQLDGR	10	Unmodified	_VIVRRQLDGR_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3700561523438	2	606.370195	1210.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.074	1	98.068	97.568	98.568	-0.0068283								0	0	0	0.38198	1	26267	26267		1.4819	0.8804	1				52562	6532	30047	30048	64389	64389					0.12890394539772387
VIVRRQLDGR	10	Unmodified	_VIVRRQLDGR_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	606.370195	1210.72584	0.32707	0.00019833	-0.95055	-0.00057638	-0.62347	-0.00037805	606.3695965963348	97.256	0.37353	97.327	97.196	97.569	0.070465	-0.053369	-0.00031172	NaN	1.4819	62	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159330			52563	6532	30047	30048							0.12890394539772387
VIVSITYY	8	Unmodified	_VIVSITYY_					0	0	0			REV__nc|ENSG00000140090|Q8NFF2-2|SLC24A4	REV__nc|ENSG00000140090|Q8NFF2-2|SLC24A4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.277099609375	2	479.268219	956.521884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.303	1	73.356	72.856	73.856	0.053833								0	0	0	0.36336	1	18720	18720		8.5933	0.68312	1		+		52564	16020	30048	30049	64390	64390					0.04188437325751693
VIWCVLPIF	9	Unmodified	_VIWCVLPIF_					0	0	0			REV__nc|ENSG00000162711|Q96P20-3|NLRP3	REV__nc|ENSG00000162711|Q96P20-3|NLRP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7916870117188	2	545.311906	1088.60926	0.64169	0.00034992	1.8689	0.0010191	2.5106	0.001369	545.3126548546609	60.421	0.3166	60.409	60.198	60.514	-0.011486					20	11	2	0	0	0	0.19319	1	14791	14791		20.871	0	1	794110	+		52565	17003	30049	30050	64391	64391					0.06849939995686327
VIWPQLIQ	8	Unmodified	_VIWPQLIQ_					0	0	0			REV__ENST00000495329.1_1_2:202488980-202490962:-|nuORF	REV__ENST00000495329.1_1_2:202488980-202490962:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.82049560546875	2	498.797478	995.580402	0.58527	0.00029193	0.64913	0.00032379	1.2344	0.00061572	498.7977748053392	85.377	0.28233	85.377	85.202	85.484	0					13	10	2	0	0	0	0.33245	1	22399	22399		19.439	1.304	1	142370	+		52566	16711	30050	30051	64392	64392					0.08243538690908281
VIWPQLIQ	8	Unmodified	_VIWPQLIQ_					0	0	0			REV__ENST00000495329.1_1_2:202488980-202490962:-|nuORF	REV__ENST00000495329.1_1_2:202488980-202490962:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.8204345703125	2	498.797478	995.580402	0.56275	0.0002807	1.6033	0.00079974	2.1661	0.0010804	498.79849427601215	85.319	0.20586	85.307	85.245	85.451	-0.01284					9	7	2	0	0	0	0.34092	1	22395	22395		13.508	0.97634	1	103060	+		52567	16711	30050	30051	64393	64393					0.08243538690908281
VIWWKNLQIIW	11	Unmodified	_VIWWKNLQIIW_					0	0	0		ENST00000519759.1_1_5:156649807-156665140:+|nuORF;ENST00000422843.7_1_5:156638304-156665140:+|nuORF	ENST00000519759.1_1_5:156649807-156665140:+|nuORF	ENST00000519759.1_1_5:156649807-156665140:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8186950683594	3	500.29049	1497.84964	0.52381	0.00026206	-3.4576	-0.0017298	-2.9338	-0.0014677	500.28629616698413	43.27	0.50151	43.347	43.182	43.684	0.077515					41	17	3	0	0	0	0.33287	1	9540	9540		1.3296	0	1	289730			52568	10384	30051	30052	64394	64394					0.12063052587427592
VIYCVDIIFWY	11	Unmodified	_VIYCVDIIFWY_					0	0	0		ENST00000560801.5_2_15:31320559-31354823:-|nuORF;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1	ENST00000560801.5_2_15:31320559-31354823:-|nuORF	ENST00000560801.5_2_15:31320559-31354823:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.5762939453125	3	478.577308	1432.7101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.924	1	61.021	60.521	61.521	0.096985								0	0	0	0.37452	1	14925	14925		2.8433	0.21205	1				52569	3759	30052	30053	64395	64395					0.011049271878619038
VIYEEESRH	9	Unmodified	_VIYEEESRH_					0	0	0		nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2	nc|ENSG00000119042|Q9UPW6-2|SATB2	nc|ENSG00000119042|Q9UPW6-2|SATB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8026123046875	2	581.280377	1160.5462	0.5215	0.00030314	3.1216	0.0018145	3.6431	0.0021177	581.2816106383196	64.217	0.53559	64.208	64.045	64.58	-0.0095367					30	19	3	0	0	0	0.24913	1	16012	16012		12.532	0.89125	1	329210			52570	2858	30053	30054	64396	64396					-0.027649542586686948
VIYESAVIL	9	Unmodified	_VIYESAVIL_					0	0	0			REV__ENST00000587410.1_1_18:77132833-77134205:+|nuORF	REV__ENST00000587410.1_1_18:77132833-77134205:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.79486083984375	2	503.794601	1005.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.261	1	81.261	80.761	81.761	0								0	0	0	0.14428	1	21159	21159		36.044	1.9418	1		+		52571	22534	30054	30055	64397	64397					0.07208395388579447
VIYFNAGAI	9	Unmodified	_VIYFNAGAI_					0	0	0			REV__nc|ENSG00000198682|O95340|PAPSS2	REV__nc|ENSG00000198682|O95340|PAPSS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.80853271484375	2	484.26601	966.517468	0.47756	0.00023127	-0.13158	-6.3722E-05	0.34598	0.00016754	484.2658658473965	47.767	0.35706	47.767	47.44	47.797	0					25	12	3	0	0	0	0.24542	1	10773	10773		14.582	9.8257	1	361430	+		52572	18844	30055	30056	64398	64398					0.03286972902856178
VIYLFTVL	8	Unmodified	_VIYLFTVL_					0	0	0		OR8I2|p.F33V|1|0.12|ENSG00000172154|chr11:56093404-56093404|T/G|missense_variant	OR8I2|p.F33V|1|0.12|ENSG00000172154|chr11:56093404-56093404|T/G|missense_variant	OR8I2|p.F33V|1|0.12|ENSG00000172154|chr11:56093404-56093404|T/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.80853271484375	2	484.296779	966.579005	0.48743	0.00023606	4.3488	0.0021061	4.8362	0.0023422	484.30022824101894	47.562	0.71135	47.562	47.112	47.823	0					66	25	3	0	0	0	0.30749	1	10773	10773		28.173	0	1	859700			52573	13039	30056	30057	64399	64399					0.09437904602134495
VIYRRKKVHHP	11	Unmodified	_VIYRRKKVHHP_					0	0	0		ENST00000562413.2_1_6:147124559-147124826:-|nuORF;ENST00000560671.5_1_15:34440831-34455877:-|nuORF;ENST00000540594.5_1_15:34439399-34502250:-|nuORF;ENSG00000134152|ENST00000256544|KATNBL1	ENST00000562413.2_1_6:147124559-147124826:-|nuORF	ENST00000562413.2_1_6:147124559-147124826:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.9593200683594	3	478.293117	1431.85752	0.37194	0.0001779	0.30974	0.00014815	0.68168	0.00032604	478.29307980585696	93.667	0.73569	93.667	93.513	94.248	-0.00051117					76	51	2	0	0	0	0.33287	1	24935	24935		0.45452	0.45452	1	245570			52574	3758	30057	30058	64400	64400					0.15886624627546553
VIYSMGKDVF	10	Unmodified	_VIYSMGKDVF_					0	0	0			REV__nc|ENSG00000111696|Q86UY8-2|NT5DC3	REV__nc|ENSG00000111696|Q86UY8-2|NT5DC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.813720703125	2	579.796817	1157.57908	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.759	1	89.85	89.35	90.35	0.090569								0	0	0	0.35542	1	23758	23758		12.532	0	1		+		52575	14733	30058	30059	64401	64401					0.006595365398425201
VIYYLVVL	8	Unmodified	_VIYYLVVL_					0	0	0			REV__ENST00000524311.1_1_X:148850572-148853026:+|nuORF	REV__ENST00000524311.1_1_X:148850572-148853026:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.79608154296875	2	491.304604	980.594655	0.17253	8.4767E-05	4.4335	0.0021782	4.606	0.0022629	491.3085034067492	40.999	0.32951	40.999	40.796	41.125	0					15	11	2	0	0	0	0.34147	1	8805	8805		6.3541	4.7015	1	116090	+		52576	19120	30059	30060	64402	64402					0.1035819111920091
VKAARATRG	9	Unmodified	_VKAARATRG_					0	0	0			REV__ENST00000601772.1_1_19:19035054-19035967:+|nuORF	REV__ENST00000601772.1_1_19:19035054-19035967:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2857666015625	2	465.2856	928.556647	-0.0083411	-3.881E-06	0.00093249	4.3387E-07	-0.0074086	-3.4471E-06	465.2855740229231	79.761	1.1284	79.761	79.441	80.569	0					136	42	4	0	0	0	0.28674	1	20802	20802		10.824	0	1	6267400	+		52577	22636	30060	30061	64403	64403					0.08951117977085232
VKAEEVTKDK	10	Unmodified	_VKAEEVTKDK_					0	0	0			REV__ENST00000496841.5_1_2:128393248-128394989:+|nuORF	REV__ENST00000496841.5_1_2:128393248-128394989:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.3216552734375	2	573.821878	1145.6292	-0.17364	-9.9638E-05	-1.0466	-0.00060054	-1.2202	-0.00070017	574.3227684893552	111.5	0.26604	111.5	111.4	111.67	0					43	35	2	0	0	0	0.40262	1	29003	29003		2.9952	0.93549	1	143880	+		52578	17558	30061	30062	64404	64404					0.062213624693413294
VKAFPFTNK	9	Unmodified	_VKAFPFTNK_					0	0	0		ENSG00000133800|ENST00000256178|LYVE1	ENSG00000133800|ENST00000256178|LYVE1	ENSG00000133800|ENST00000256178|LYVE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7694702148438	2	526.300384	1050.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.77	1	117.79	117.29	118.29	0.023476								0	0	0	0.264	1	30517	30517		1.8442	1.0506	1				52579	3729	30062	30063	64405	64405					0.06294637202563536
VKAMDPHLVK	10	Unmodified	_VKAMDPHLVK_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3262939453125	2	569.326076	1136.6376	0.45111	0.00025683	-0.84238	-0.00047959	-0.39127	-0.00022276	569.3257121745477	36.978	0.7351	37.065	36.706	37.442	0.087406					59	26	3	0	0	0	0.36368	1	7608	7608		10.151	1.995	1	539540	+		52580	18449	30063	30064	64406	64406					0.07474637904965675
VKARHEFTEF	10	Unmodified	_VKARHEFTEF_					0	0	0		ENSG00000072315|ENST00000262839|TRPC5	ENSG00000072315|ENST00000262839|TRPC5	ENSG00000072315|ENST00000262839|TRPC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.2698364257812	2	632.327662	1262.64077	0.68357	0.00043224	-0.18552	-0.00011731	0.49805	0.00031493	632.3276719034081	41.828	0.25758	41.925	41.814	42.072	0.096622					15	8	2	0	0	0	0.31629	1	9037	9037		10.074	0	1	332820			52581	978	30064	30065	64407	64407					0.019956042833200627
VKASRAETK	9	Unmodified	_VKASRAETK_					0	0	0			REV__ENST00000360338.3_1_19:57791954-57802067:+|nuORF	REV__ENST00000360338.3_1_19:57791954-57802067:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7771301269531	2	495.290548	988.566543	0.13442	6.6575E-05	0.25286	0.00012524	0.38728	0.00019181	495.2906903281892	15.316	0.23261	15.316	15.181	15.413	0					10	7	2	0	0	0	0.33911	1	982	982		2.9952	0.69251	1	16276	+		52582	20252	30065	30066	64408	64408					0.07180261191808768
VKCHDRTSNP	10	Unmodified	_VKCHDRTSNP_					0	0	0			REV__ENSG00000163961|ENST00000318037|RNF168	REV__ENSG00000163961|ENST00000318037|RNF168	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.321044921875	2	578.780022	1155.54549	0.39509	0.00022867	-2.9033	-0.0016803	-2.5082	-0.0014517	578.7784039052372	82.702	0.2442	82.681	82.475	82.719	-0.020584					14	9	2	0	0	0	0.31323	1	21589	21589		7.1017	1.8048	1	121190	+		52583	17111	30066	30067	64409	64409					-0.026060721793555786
VKCQLRTL	8	Unmodified	_VKCQLRTL_					0	0	0		ENST00000260130.8_1_8:59494761-59494824:+|nuORF	ENST00000260130.8_1_8:59494761-59494824:+|nuORF	ENST00000260130.8_1_8:59494761-59494824:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7867431640625	2	480.786587	959.558621	-0.14759	-7.0957E-05	0.93799	0.00045097	0.7904	0.00038001	480.78695743458155	13.137	0.36938	13.137	13.058	13.427	0					24	12	4	0	0	0	0.34437	1	347	347		0.69038	0	1	84682			52584	8956	30067	30068	64410	64410					0.0772241067069217
VKDNYIPVIK	10	Unmodified	_VKDNYIPVIK_					0	0	0		ENSG00000164292|ENST00000379982|RHOBTB3;ENST00000504949.1_1_5:95067575-95091515:+|nuORF	ENSG00000164292|ENST00000379982|RHOBTB3	ENSG00000164292|ENST00000379982|RHOBTB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.3165893554688	2	594.852981	1187.69141	0.4365	0.00025966	0.27553	0.0001639	0.71203	0.00042355	594.853489896025	40.546	0.30034	40.645	40.505	40.806	0.099407					11	10	2	0	0	0	0.30555	1	8642	8642		20.415	0	1	147660			52585	5820	30068	30069	64411	64411					0.10507133608302865
VKDRLEQLRC	10	Unmodified	_VKDRLEQLRC_					0	0	0		IFIT1|p.S13R|1|0.19|ENSG00000185745|chr10:89402314-89402314|T/A|missense_variant	IFIT1|p.S13R|1|0.19|ENSG00000185745|chr10:89402314-89402314|T/A|missense_variant	IFIT1|p.S13R|1|0.19|ENSG00000185745|chr10:89402314-89402314|T/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.346923828125	2	630.348071	1258.68159	-0.04817	-3.0364E-05	0.52835	0.00033305	0.48018	0.00030268	630.8497731512255	106.77	0.52075	106.77	106.51	107.03	0					222	80	4	0	0	0	0.39935	1	28214	28214		3.5965	0	1	1742200			52586	12427	30069	30070	64412	64412					0.06259622331299397
VKEIGDTTKP	10	Unmodified	_VKEIGDTTKP_					0	0	0		ENSG00000125900|ENST00000381623|SIRPD;ENST00000453770.1_1_20:1514156-1534896:-|nuORF	ENSG00000125900|ENST00000381623|SIRPD	ENSG00000125900|ENST00000381623|SIRPD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7691650390625	2	544.303321	1086.59209	0.78907	0.00042949	0.80303	0.00043709	1.5921	0.00086658	544.3039052751503	21.303	0.37523	21.193	21.007	21.383	-0.11003					26	12	3	0	0	0	0.32072	1	2800	2800		2.9952	0.26005	1	78173			52587	3245	30070	30071	64413	64413					0.0522569092354388
VKEIGDTTKP	10	Unmodified	_VKEIGDTTKP_					0	0	0		ENSG00000125900|ENST00000381623|SIRPD;ENST00000453770.1_1_20:1514156-1534896:-|nuORF	ENSG00000125900|ENST00000381623|SIRPD	ENSG00000125900|ENST00000381623|SIRPD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.7691650390625	2	544.303321	1086.59209	0.69165	0.00037647	1.5573	0.00084765	2.249	0.0012241	544.3040999855457	21.246	0.39325	21.194	20.977	21.37	-0.05291					24	13	2	0	0	0	0.32139	1	2767	2767		1.3295	0	1	77911			52588	3245	30070	30071	64414	64414					0.0522569092354388
VKEKRHRSE	9	Unmodified	_VKEKRHRSE_					0	0	0		ENST00000500682.1_1_12:10532336-10532429:+|nuORF	ENST00000500682.1_1_12:10532336-10532429:+|nuORF	ENST00000500682.1_1_12:10532336-10532429:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.79833984375	2	584.830903	1167.64725	0.36512	0.00021353	1.3525	0.00079097	1.7176	0.0010045	584.8314010662699	56.816	0.90355	56.894	56.462	57.365	0.078674					52	33	2	0	0	0	0.25202	1	13664	13664		10.824	5.0921	1	279840			52589	11266	30071	30072	64415	64415					0.07013542234722081
VKELFEGIL	9	Unmodified	_VKELFEGIL_					0	0	0			REV__ENSG00000101654|ENST00000383314|RNMT	REV__ENSG00000101654|ENST00000383314|RNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.307861328125	2	524.307875	1046.6012	0.69102	0.00036231	-0.92379	-0.00048435	-0.23277	-0.00012204	524.3070568101958	84.775	1.0751	84.856	84.205	85.28	0.080879					98	42	3	0	0	0	0.14076	1	22253	22253		32.305	0	1	344020	+		52590	14282	30072	30073	64416	64416					0.07976084279903262
VKENKSPVC	9	Unmodified	_VKENKSPVC_					0	0	0		ENST00000155926.8_1_2:12881435-12881483:+|nuORF	ENST00000155926.8_1_2:12881435-12881483:+|nuORF	ENST00000155926.8_1_2:12881435-12881483:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.78900146484375	2	502.265684	1002.51682	0.00075939	3.8141E-07	0.34282	0.00017219	0.34358	0.00017257	502.26585415024505	12.925	0.41726	12.925	12.783	13.2	0					25	14	3	0	0	0	0.25431	1	329	329		9.3831	1.473	1	44656			52591	8781	30073	30074	64417	64417					0.015658101914937106
VKESSQHSI	9	Unmodified	_VKESSQHSI_					0	0	0		ZNF233|p.D432Sfs*2|1|0.06|ENSG00000159915|chr19:44273952-44273953|-/CTCA|frameshift_variant;ENSG00000159915|ENST00000683810|ZNF233	ZNF233|p.D432Sfs*2|1|0.06|ENSG00000159915|chr19:44273952-44273953|-/CTCA|frameshift_variant	ZNF233|p.D432Sfs*2|1|0.06|ENSG00000159915|chr19:44273952-44273953|-/CTCA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.7635498046875	2	507.764363	1013.51417	0.38324	0.00019459	-0.40667	-0.00020649	-0.02343	-1.1897E-05	507.76393557092877	64.563	1.6024	64.553	63.822	65.424	-0.0095291					111	58	3	0	0	0	0.17277	1	16014	16014		27.629	3.6082	1	596860			52592	5428	30074	30075	64418	64418					0.00795678058204885
VKESSQHSI	9	Unmodified	_VKESSQHSI_					0	0	0		ZNF233|p.D432Sfs*2|1|0.06|ENSG00000159915|chr19:44273952-44273953|-/CTCA|frameshift_variant;ENSG00000159915|ENST00000683810|ZNF233	ZNF233|p.D432Sfs*2|1|0.06|ENSG00000159915|chr19:44273952-44273953|-/CTCA|frameshift_variant	ZNF233|p.D432Sfs*2|1|0.06|ENSG00000159915|chr19:44273952-44273953|-/CTCA|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	507.764363	1013.51417	0.38324	0.00019459	-0.40667	-0.00020649	-0.02343	-1.1897E-05	507.76393557092877	64.563	1.6024	64.553	63.822	65.424	-0.0095291	-0.01937	8.1397E-05	NaN	27.629	111	58	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	596860			52593	5428	30074	30075							0.00795678058204885
VKFCKPLI	8	Unmodified	_VKFCKPLI_					0	0	0		ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.29144287109375	2	474.290974	946.567395	0.16878	8.005E-05	0.56215	0.00026662	0.73093	0.00034668	474.291165182131	69.428	1.6835	69.494	69.012	70.696	0.066048					111	59	2	0	0	0	0.45942	1	17504	17504		2.5775	2.5775	1	415290			52594	7158	30075	30076	64419	64419					0.09197384307140055
VKFCKPLI	8	Unmodified	_VKFCKPLI_					0	0	0		ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	ENSG00000179941|ENST00000650064|BBS10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2911682128906	2	474.290974	946.567395	0.18643	8.8424E-05	0.61375	0.0002911	0.80019	0.00037952	474.29113245327596	69.404	1.941	69.382	68.918	70.859	-0.022087					106	69	2	0	0	0	0.45942	1	17523	17523		2.5775	2.5775	1	404040			52595	7158	30075	30076	64420	64420					0.09197384307140055
VKGFLLHQFC	10	Unmodified	_VKGFLLHQFC_					0	0	0			REV__nc|ENSG00000012048|P38398-8|BRCA1	REV__nc|ENSG00000012048|P38398-8|BRCA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.3203735351562	2	596.320794	1190.62703	0.507	0.00030233	-1.2131	-0.00072338	-0.70608	-0.00042105	596.3204848230685	29.102	1.592	29.115	28.831	30.423	0.012264					156	55	6	0	0	0	0.40106	1	5386	5386		3.2813	0.54611	1	7683200	+		52596	13436	30076	30077	64421	64421					0.0393465525053216
VKGGKRNWL	9	Unmodified	_VKGGKRNWL_					0	0	0			REV__SVA_D_dup1229|chr17:30522805-30524227:+|1.3285429955376928|0.476847412502663|1.48|542.0|31|3|sense	REV__SVA_D_dup1229|chr17:30522805-30524227:+|1.3285429955376928|0.476847412502663|1.48|542.0|31|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3052368164062	2	529.3169	1056.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.7	1	111.71	111.21	112.21	0.0131								0	0	0	0.24715	1	29077	29077		7.2892	2.5332	1		+		52597	23315	30077	30078	64422	64422					0.09320264045254589
VKGNTKNEVW	10	Unmodified	_VKGNTKNEVW_					0	0	0			REV__ENSG00000206072|ENST00000544088|SERPINB11	REV__ENSG00000206072|ENST00000544088|SERPINB11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.3639526367188	2	587.814387	1173.61422	0.4495	0.00026422	1.4947	0.00087858	1.9442	0.0011428	587.8160369901366	21.385	0.79162	21.336	20.783	21.574	-0.049377					40	27	2	0	0	0	0.32072	1	2664	2664		2.9952	1.151	1	61599	+		52598	19014	30078	30079	64423	64423					0.034359153920149765
VKGRIKRKH	9	Unmodified	_VKGRIKRKH_					0	0	0			REV__ENST00000430298.6_1_19:12222347-12224207:+|nuORF	REV__ENST00000430298.6_1_19:12222347-12224207:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7958984375	2	561.372541	1120.73053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.09	1	119.11	118.61	119.61	0.026253								0	0	0	0.26829	1	30815	30815		0	0	1		+		52599	20943	30079	30080	64424	64424					0.1749932347322556
VKGVNLKQQLL	11	Unmodified	_VKGVNLKQQLL_					0	0	0			REV__nc|ENSG00000108840|Q9UQL6-2|HDAC5	REV__nc|ENSG00000108840|Q9UQL6-2|HDAC5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.93255615234375	3	413.930962	1238.77106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.801	1	39.801	39.301	40.301	0								0	0	0	0.38124	1	8430	8430		1.2148	0.10508	1		+		52600	14612	30080	30081	64425	64425					0.161222002823024
VKHMPPPP	8	Unmodified	_VKHMPPPP_					0	0	0			REV__ENST00000231461.9_1_5:100238801-100238969:-|nuORF	REV__ENST00000231461.9_1_5:100238801-100238969:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7870178222656	2	451.749473	901.484393	-0.014302	-6.4611E-06	3.0102	0.0013598	2.9959	0.0013534	451.7508338687221	18.301	0.3723	18.184	17.985	18.358	-0.11739					21	12	2	0	0	0	0.34319	1	1902	1902		5.7604	1.0044	1	30612	+		52601	19466	30081	30082	64426	64426					0.029710675791534413
VKIIDPIHLYA	11	Unmodified	_VKIIDPIHLYA_					0	0	0			REV__nc|ENSG00000173599|P11498-2|PC	REV__nc|ENSG00000173599|P11498-2|PC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.61090087890625	3	427.923696	1280.74926	0.0039828	1.7043E-06	0.34227	0.00014646	0.34625	0.00014817	427.923586376766	46.04	0.60451	46.105	45.872	46.476	0.065048					52	21	4	0	0	0	0.32477	1	10408	10408		3.8459	0.25323	1	1804000	+		52602	23088	30082	30083	64427	64427					0.12011395533772884
VKINPVQQSRP	11	Unmodified	_VKINPVQQSRP_					0	0	0		ENSG00000164463|ENST00000296953|CREBRF;nc|ENSG00000164463|Q8IUR6-3|CREBRF;nc|ENSG00000164463|Q8IUR6-2|CREBRF;ENST00000520464.1_1_5:172507634-172535847:+|nuORF	ENSG00000164463|ENST00000296953|CREBRF	ENSG00000164463|ENST00000296953|CREBRF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.369140625	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.89	1	102.89	102.39	103.39	0								0	0	0	0.37382	1	27345	27345		2.9952	0	1				52603	5846	30083	30084	64428	64428					0.1033955510006308
VKKCIQKMTV	10	Unmodified	_VKKCIQKMTV_					0	0	0			REV__ENSG00000124795|ENST00000652689|DEK	REV__ENSG00000124795|ENST00000652689|DEK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3426513671875	2	589.343412	1176.67227	0.38006	0.00022399	-1.3382	-0.00078867	-0.95815	-0.00056468	589.342652505271	91.157	0.79114	91.157	90.946	91.737	0					75	58	2	0	0	0	0.40403	1	24134	24134		2.7352	2.7352	1	403980	+		52604	15251	30084	30085	64429	64429					0.09100137721384272
VKKCIQKMTV	10	Unmodified	_VKKCIQKMTV_					0	0	0			REV__ENSG00000124795|ENST00000652689|DEK	REV__ENSG00000124795|ENST00000652689|DEK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8446044921875	2	589.343412	1176.67227	0.34019	0.00020049	-1.0207	-0.00060155	-0.68052	-0.00040106	589.3427954654742	91.93	1.249	91.93	91.419	92.668	0					142	91	2	0	0	0	0.40403	2	24328	24328;24499		2.7352	2.7352	1	202860	+		52605	15251	30084	30085	64430;64431	64430					0.09100137721384272
VKKCIQKMTV	10	Unmodified	_VKKCIQKMTV_					0	0	0			REV__ENSG00000124795|ENST00000652689|DEK	REV__ENSG00000124795|ENST00000652689|DEK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3434448242188	2	589.343412	1176.67227	0.062049	3.6568E-05	-0.1095	-6.4536E-05	-0.047456	-2.7968E-05	589.3433082742267	97.484	0.85527	97.484	97.135	97.991	0					153	89	2	0	0	0	0.40403	1	26034	26034		2.7352	0.43246	1	132520	+		52606	15251	30084	30085	64432	64432					0.09100137721384272
VKKCIQKMTV	10	Unmodified	_VKKCIQKMTV_					0	0	0			REV__ENSG00000124795|ENST00000652689|DEK	REV__ENSG00000124795|ENST00000652689|DEK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3417358398438	2	589.343412	1176.67227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.21	1	114.21	113.71	114.71	0								0	0	0	0.38187	1	29639	29639		1.3295	0.63916	1		+		52607	15251	30084	30085	64433	64433					0.09100137721384272
VKKCIQKMTV	10	Unmodified	_VKKCIQKMTV_					0	0	0			REV__ENSG00000124795|ENST00000652689|DEK	REV__ENSG00000124795|ENST00000652689|DEK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.343505859375	2	589.343412	1176.67227	0.4139	0.00024393	-0.37697	-0.00022217	0.036925	2.1761E-05	589.3430806272279	89.027	1.5197	89.117	88.456	89.976	0.090561					161	85	2	0	0	0	0.40403	1	23700	23700		2.7352	2.7352	1	325530	+		52608	15251	30084	30085	64434	64434					0.09100137721384272
VKKCIQKMTV	10	Unmodified	_VKKCIQKMTV_					0	0	0			REV__ENSG00000124795|ENST00000652689|DEK	REV__ENSG00000124795|ENST00000652689|DEK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3426513671875	2	589.343412	1176.67227	0.44721	0.00026356	-0.89616	-0.00052815	-0.44895	-0.00026459	589.3427153651412	94.865	0.90755	94.863	94.683	95.59	-0.0020142					142	83	2	0	0	0	0.40403	3	25298	25298;25340;25452		2.7352	2.7352	1	161130	+		52609	15251	30084	30085	64435;64436;64437	64435					0.09100137721384272
VKKELEQWTLL	11	Unmodified	_VKKELEQWTLL_					0	0	0			REV__nc|ENSG00000126107|Q5T447-2|HECTD3	REV__nc|ENSG00000126107|Q5T447-2|HECTD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.9379577636719	3	462.937894	1385.79185	0.26511	0.00012273	-0.14335	-6.6362E-05	0.12176	5.6366E-05	462.9378452058637	48.716	1.3841	48.76	48.156	49.54	0.044891					143	50	4	0	0	0	0.46842	1	11145	11145		2.2527	0	1	5238100	+		52610	15300	30085	30086	64438	64438					0.114387458713054
VKKELEQWTLL	11	Unmodified	_VKKELEQWTLL_					0	0	0			REV__nc|ENSG00000126107|Q5T447-2|HECTD3	REV__nc|ENSG00000126107|Q5T447-2|HECTD3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	462.937894	1385.79185	0.13235	6.1269E-05	-0.06342	-2.936E-05	0.068928	3.1909E-05	462.93787492437497	48.701	1.4112	48.701	48.077	49.488	0	-0.015694	3.264E-05	NaN	2.2527	130	50	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5150700	+		52611	15300	30085	30086							0.114387458713054
VKKELEQWTLL	11	Unmodified	_VKKELEQWTLL_					0	0	0			REV__nc|ENSG00000126107|Q5T447-2|HECTD3	REV__nc|ENSG00000126107|Q5T447-2|HECTD3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	462.937894	1385.79185	0.24256	0.00011229	-0.082106	-3.801E-05	0.16045	7.4278E-05	462.93787920471493	48.658	1.4989	48.69	48.156	49.655	0.032043	-0.027562	6.6882E-06	NaN	2.2527	145	54	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5164500	+		52612	15300	30085	30086							0.114387458713054
VKKRRDEEQL	10	Unmodified	_VKKRRDEEQL_					0	0	0			REV__ENST00000514191.5_1_14:73404686-73407184:+|nuORF	REV__ENST00000514191.5_1_14:73404686-73407184:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.8728332519531	3	434.249242	1299.7259	0.0066554	2.8901E-06	2.5219	0.0010951	2.5286	0.001098	434.2502428247154	36.114	0.34942	36.114	35.907	36.256	0					20	12	2	0	0	0	0.31899	1	7335	7335		7.4771	1.2852	1	121260	+		52613	21832	30086	30087	64439	64439					0.08802349749134919
VKKRRNIVTF	10	Unmodified	_VKKRRNIVTF_					0	0	0			REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1	REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.9347839355469	3	420.934818	1259.78262	0.11081	4.6643E-05	0.049567	2.0865E-05	0.16038	6.7508E-05	420.9347882456033	32.013	1.4507	32.013	31.694	33.145	0					126	51	3	0	0	0	0.3994	1	6081	6081		3.5871	0.26742	1	1018700	+		52614	18113	30087	30088	64440	64440					0.1631244209631859
VKKRRNIVTF	10	Unmodified	_VKKRRNIVTF_					0	0	0			REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1	REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.9349670410156	3	420.934818	1259.78262	0.25409	0.00010695	-0.068056	-2.8647E-05	0.18603	7.8307E-05	420.93473861684106	31.945	1.2506	31.987	31.683	32.934	0.042366					117	44	3	0	0	0	0.38522	1	6052	6052		6.1918	2.3155	1	1068100	+		52615	18113	30087	30088	64441	64441					0.1631244209631859
VKKRRNIVTF	10	Unmodified	_VKKRRNIVTF_					0	0	0			REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1	REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.9347839355469	3	420.934818	1259.78262	0.096683	4.0697E-05	0.075754	3.1887E-05	0.17244	7.2585E-05	420.93478346432465	31.966	1.3836	32.007	31.672	33.055	0.040991					132	49	4	0	0	0	0.38522	1	6056	6056		6.1918	2.3155	1	1055400	+		52616	18113	30087	30088	64442	64442					0.1631244209631859
VKKTRHQRHHR	11	Unmodified	_VKKTRHQRHHR_					0	0	0		ENSG00000189377|ENST00000601181|CXCL17	ENSG00000189377|ENST00000601181|CXCL17	ENSG00000189377|ENST00000601181|CXCL17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2663879394531	3	494.95902	1481.85523	0.31938	0.00015808	0.17565	8.6939E-05	0.49503	0.00024502	495.29288955959265	16.687	0.34298	16.687	16.377	16.72	0					14	11	2	0	0	0	0.33351	1	1361	1361		0.094841	0	1	139370			52617	7816	30088	30089	64443	64443					0.13357588942449183
VKLDKLIEF	9	Unmodified	_VKLDKLIEF_					0	0	0			REV__TLR5|p.T310I|1|0.31|ENSG00000187554|chr1:223112103-223112103|G/A|missense_variant	REV__TLR5|p.T310I|1|0.31|ENSG00000187554|chr1:223112103-223112103|G/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.8544921875	2	552.8368	1103.65905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.121	1	55.192	54.692	55.692	0.070885								0	0	0	0.20303	1	13138	13138		21.537	4.4241	1		+		52618	23338	30089	30090	64444	64444					0.11136346205330483
VKLFWRELK	9	Unmodified	_VKLFWRELK_					0	0	0		ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9184875488281	3	406.916764	1217.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.15	1	104.15	103.65	104.65	0.0011444								0	0	0	0.264	1	27685	27685		0.96228	0.26461	1				52619	3899	30090	30091	64445	64445					0.12830849944725742
VKLISVKKWCL	11	Unmodified	_VKLISVKKWCL_					0	0	0			REV__nc|ENSG00000186314|Q8N945|PRELID2	REV__nc|ENSG00000186314|Q8N945|PRELID2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.6082763671875	3	439.608943	1315.805	0.26713	0.00011743	-0.82662	-0.00036339	-0.55949	-0.00024596	439.60842874252523	87.056	0.59904	87.056	86.571	87.17	0					63	22	4	0	0	0	0.48173	1	22881	22881		0.50596	0	1	1168500	+		52620	23138	30091	30092	64446	64446					0.15972905449734753
VKLKQQLKQN	10	Unmodified	_VKLKQQLKQN_					0	0	0			REV__ENST00000435712.1_1_10:131904549-131906742:+|nuORF;REV__CTAGE1|p.A429Sfs*3|1|0.31|ENSG00000212710|chr18:22416527-22416528|-/T|frameshift_variant	REV__CTAGE1|p.A429Sfs*3|1|0.31|ENSG00000212710|chr18:22416527-22416528|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.8912048339844	3	409.590828	1225.75066	-0.31237	-0.00012794	0.32319	0.00013238	0.01082	4.432E-06	409.59078859404684	13.412	0.81483	13.344	12.734	13.549	-0.067496					26	14	3	0	0	0	0.32167	1	360	360		0.62683	0.12087	1	40781	+		52621	20999;13288	30092	30093	64447	64447					0.14681029622511232
VKLKRYWMS	9	Unmodified	_VKLKRYWMS_					0	0	0			REV__ENSG00000198883|ENST00000535214|PNMA5	REV__ENSG00000198883|ENST00000535214|PNMA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.72467041015625	3	404.230355	1209.66923	-0.40094	-0.00016207	-0.44315	-0.00017914	-0.84409	-0.00034121	404.56448286895755	14.385	0.42846	14.385	14.221	14.649	0					32	14	3	0	0	0	0.26228	1	664	664		1.1933	0.68739	1	46731	+		52622	18882	30093	30094	64448	64448					0.0727863065890233
VKLLRSQKD	9	Unmodified	_VKLLRSQKD_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.25634765625	2	543.835123	1085.65569	0.15695	8.5357E-05	0.6784	0.00036894	0.83536	0.0004543	543.8353591415257	14.209	0.30913	14.209	14.086	14.395	0					21	10	3	0	0	0	0.26262	1	704	704		0.45834	0	1	84193			52623	6111	30094	30095	64449	64449					0.11629096151318663
VKLLRSQKD	9	Unmodified	_VKLLRSQKD_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.835123	1085.65569	0.25446	0.00013839	0.40993	0.00022293	0.6644	0.00036132	543.8352294344978	14.281	0.30249	14.215	14.098	14.4	-0.066068	0.0097189	-0.00022757	NaN	0.45834	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89145			52624	6111	30094	30095							0.11629096151318663
VKLPKGKRKKK	11	Unmodified	_VKLPKGKRKKK_					0	0	0		ENST00000465851.1_1_2:196545249-196581758:+|nuORF;ENSG00000196950|ENST00000359634|SLC39A10	ENST00000465851.1_1_2:196545249-196581758:+|nuORF	ENST00000465851.1_1_2:196545249-196581758:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.310791015625	3	437.309996	1308.90816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.5	1	112.48	111.98	112.98	-0.015625								0	0	0	0.38222	1	29263	29263		0.094841	0.094841	1				52625	7917	30095	30096	64450	64450					0.26606153952525347
VKLSGWRWRG	10	Unmodified	_VKLSGWRWRG_					0	0	0		nc|ENSG00000172508|A5YM72|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1;nc|ENSG00000172508|A5YM72-4|CARNS1	nc|ENSG00000172508|A5YM72|CARNS1	nc|ENSG00000172508|A5YM72|CARNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.8284301757812	2	622.854181	1243.69381	-0.19798	-0.00012331	-0.18512	-0.0001153	-0.38309	-0.00023861	623.3557120745271	12.204	0.14108	12.107	12.037	12.178	-0.096607					8	5	2	0	0	0	0.41892	1	65	65		0	0	1	19887			52626	6642	30096	30097	64451	64451					0.08171026856621211
VKLSKYWLFV	10	Unmodified	_VKLSKYWLFV_					0	0	0			REV__ENST00000396193.5_2_7:31792725-31792857:-|nuORF	REV__ENST00000396193.5_2_7:31792725-31792857:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8831787109375	2	641.881542	1281.74853	0.63609	0.00040829	0.95289	0.00061164	1.589	0.0010199	641.8824013892053	91.359	0.592	91.359	91.193	91.785	0.00046539					72	39	3	0	0	0	0.41085	1	24291	24291		1.4819	0	1	278010	+		52627	20651	30097	30098	64452	64452					0.1189260088467563
VKLVKVAV	8	Unmodified	_VKLVKVAV_					0	0	0			REV__ENSG00000078061|ENST00000377045|ARAF	REV__ENSG00000078061|ENST00000377045|ARAF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.2502746582031	2	428.304939	854.595324	-0.21382	-9.1581E-05	-0.30346	-0.00012997	-0.51728	-0.00022155	428.30462956832366	33.14	0.33871	33.14	32.895	33.233	0					13	11	2	0	0	0	0.34092	1	6387	6387		8.5933	3.3626	1	81696	+		52628	13850	30098	30099	64453	64453					0.16221030558892835
VKLVKVAV	8	Unmodified	_VKLVKVAV_					0	0	0			REV__ENSG00000078061|ENST00000377045|ARAF	REV__ENSG00000078061|ENST00000377045|ARAF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.25030517578125	2	428.304939	854.595324	-0.16958	-7.2633E-05	-1.3304	-0.00056981	-1.5	-0.00064245	428.304333380352	33.045	0.22449	33.1	32.946	33.171	0.055309					11	7	2	0	0	0	0.34092	1	6360	6360		13.508	4.1604	1	95044	+		52629	13850	30098	30099	64454	64454					0.16221030558892835
VKMILLIIPSF	11	Unmodified	_VKMILLIIPSF_					0	0	0		ENST00000446120.6_1_1:95323025-95330375:+|nuORF	ENST00000446120.6_1_1:95323025-95330375:+|nuORF	ENST00000446120.6_1_1:95323025-95330375:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.77398681640625	3	425.269927	1272.78795	-1.8116	-0.00077041	0.34574	0.00014703	-1.4658	-0.00062338	425.27020074086136	34.686	0.32878	34.761	34.604	34.933	0.075306					20	11	2	0	0	0	0.3333	1	6857	6857		1.3296	0.96297	1	135990			52630	10591	30099	30100	64455	64455					0.1624698484390592
VKMKVPKP	8	Unmodified	_VKMKVPKP_					0	0	0			REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.2718200683594	2	463.796423	925.578294	-0.31026	-0.0001439	1.6663	0.00077284	1.3561	0.00062895	463.79688835705116	14.542	0.16791	14.542	14.423	14.591	0					7	5	2	0	0	0	0.34437	1	747	747		0.69038	0	1	17413	+		52631	13891	30100	30101	64456	64456					0.11252786681427551
VKMKVPKP	8	Unmodified	_VKMKVPKP_					0	0	0			REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	463.796423	925.578294	-0.25103	-0.00011643	1.7447	0.00080918	1.4937	0.00069275	463.79719095730337	14.668	0.16919	14.563	14.454	14.623	-0.10466	0.010777	9.7557E-06	NaN	0.69038	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19596	+		52632	13891	30100	30101							0.11252786681427551
VKNDDNHIAQI	11	Unmodified	_VKNDDNHIAQI_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8248291015625	2	633.825483	1265.63641	-0.062238	-3.9448E-05	-0.17883	-0.00011335	-0.24107	-0.0001528	633.8252199477857	100.16	0.6366	100.16	99.827	100.46	0					174	83	3	0	0	0	0.43842	1	26752	26752		6.1918	0.89496	1	234360	+		52633	13754	30101	30102	64457	64457					0.01422095069756324
VKNHHVPEQ	9	Unmodified	_VKNHHVPEQ_					0	0	0		ENSG00000071991|ENST00000262150|CDH19;nc|ENSG00000071991|Q9H159-2|CDH19;CDH19|p.E543Dfs*10|1|0.02|ENSG00000071991|chr18:66509194-66509195|-/CA|frameshift_variant	ENSG00000071991|ENST00000262150|CDH19	ENSG00000071991|ENST00000262150|CDH19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3328247070312	2	544.285797	1086.55704	0.17691	9.6289E-05	0.62795	0.00034178	0.80486	0.00043807	544.2861594147288	12.923	0.11352	12.856	12.791	12.905	-0.067496					6	3	2	0	0	0	0.26168	1	258	258		1.8442	1.3859	1	22188			52634	966	30102	30103	64458	64458					0.01722492906287698
VKPAERRRRN	10	Unmodified	_VKPAERRRRN_					0	0	0			REV__ENSG00000244731|ENST00000428956|C4A;REV__ENST00000478388.1_1_6:31999390-31999952:+|nuORF	REV__ENSG00000244731|ENST00000428956|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.88330078125	2	641.384168	1280.75378	0.27296	0.00017507	-0.3106	-0.00019921	-0.037638	-2.4141E-05	641.3849818814257	93.344	1.7735	93.344	92.641	94.415	0					355	148	3	0	0	0	0.41168	2	25005	25005;25021		1.3295	0.92882	1	570220	+		52635	19110;21450	30103	30104	64459;64460	64459					0.12463717519881357
VKPQVRLPF	9	Unmodified	_VKPQVRLPF_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A;ENST00000583079.1_1_17:18023566-18025792:+|nuORF	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.807861328125	2	542.337301	1082.66005	0.64164	0.00034798	2.3678	0.0012841	3.0094	0.0016321	542.8414986494485	79.751	0.31696	79.722	79.544	79.861	-0.028931					14	11	2	0	0	0	0.25811	1	20625	20625		5.2307	0	1	99413			52636	1405	30104	30105	64461	64461					0.12202605364882402
VKPTGKHK	8	Unmodified	_VKPTGKHK_					0	0	0			REV__ENSG00000156509|ENST00000428847|FBXO43	REV__ENSG00000156509|ENST00000428847|FBXO43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.23480224609375	2	447.779619	893.544686	-0.10833	-4.8506E-05	-1.1628	-0.00052067	-1.2711	-0.00056918	447.7788594936643	18.728	0.55953	18.67	18.341	18.901	-0.058174					29	19	2	0	0	0	0.34367	1	2020	2020		4.3292	2.0265	1	51022	+		52637	16750	30105	30106	64462	64462					0.09365501233889972
VKQKVEHI	8	Unmodified	_VKQKVEHI_					0	0	0		ENST00000498078.1_1_13:41303510-41323454:-|nuORF;ENSG00000102738|ENST00000323563|MRPS31	ENST00000498078.1_1_13:41303510-41323454:-|nuORF	ENST00000498078.1_1_13:41303510-41323454:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.31927490234375	2	490.798009	979.581465	-0.088136	-4.3257E-05	-0.30693	-0.00015064	-0.39506	-0.0001939	490.7977774641272	12.953	0.25899	12.886	12.763	13.022	-0.067496					17	8	3	0	0	0	0.34419	1	311	311		1.8442	0	1	79500			52638	1776	30106	30107	64463	64463					0.09085753059787294
VKQLHPVS	8	Unmodified	_VKQLHPVS_					0	0	0			REV__nc|ENSG00000231991|A6NMY6|ANXA2P2	REV__nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.27142333984375	2	454.271627	906.528701	-0.19643	-8.9231E-05	0.036381	1.6527E-05	-0.16004	-7.2704E-05	454.27150437410444	12.919	0.5581	12.919	12.669	13.227	0					43	19	3	0	0	0	0.45169	1	298	298		5.2307	0	1	82163	+		52639	18212	30107	30108	64464	64464					0.07169794996991641
VKQLHPVS	8	Unmodified	_VKQLHPVS_					0	0	0			REV__nc|ENSG00000231991|A6NMY6|ANXA2P2	REV__nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	454.271627	906.528701	-0.19643	-8.9231E-05	0.036381	1.6527E-05	-0.16004	-7.2704E-05	454.27150437410444	12.919	0.5581	12.919	12.669	13.227	0	0.026363	-6.4103E-05	NaN	5.2307	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82163	+		52640	18212	30107	30108							0.07169794996991641
VKQLHPVS	8	Unmodified	_VKQLHPVS_					0	0	0			REV__nc|ENSG00000231991|A6NMY6|ANXA2P2	REV__nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	454.271627	906.528701	-0.14588	-6.627E-05	0.28412	0.00012907	0.13824	6.2797E-05	454.2717602762418	12.945	0.60586	12.845	12.643	13.249	-0.09929	-0.046872	0.00016098	NaN	5.2307	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67386	+		52641	18212	30107	30108							0.07169794996991641
VKQLHPVS	8	Unmodified	_VKQLHPVS_					0	0	0			REV__nc|ENSG00000231991|A6NMY6|ANXA2P2	REV__nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	454.271627	906.528701	-0.26029	-0.00011824	0.036101	1.64E-05	-0.22419	-0.00010184	454.2716921806116	12.98	0.54837	12.913	12.64	13.189	-0.067495	0.020508	-6.4357E-05	NaN	5.2307	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65898	+		52642	18212	30107	30108							0.07169794996991641
VKQPWYDHN	9	Unmodified	_VKQPWYDHN_					0	0	0			REV__chr6:122796968-122803681|111|61.12|0.71|6.43|+|0|SMPDL3A,None|1	REV__chr6:122796968-122803681|111|61.12|0.71|6.43|+|0|SMPDL3A,None|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.7857055664062	2	593.78563	1185.55671	0.43112	0.00025599	-0.39962	-0.00023729	0.0315	1.8704E-05	593.785241463846	82.179	2.4243	82.248	81.44	83.865	0.068993					179	99	2	0	0	0	0.33508	1	21772	21772		3.5965	1.2938	1	804010	+		52643	13208	30108	30109	64465	64465					-0.028649268135723105
VKQVSHVGV	9	Unmodified	_VKQVSHVGV_					0	0	0		nc|ENSG00000171302|Q8WVQ1-2|CANT1	nc|ENSG00000171302|Q8WVQ1-2|CANT1	nc|ENSG00000171302|Q8WVQ1-2|CANT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.2480163574219	2	476.782359	951.550165	0.35668	0.00017006	-0.030618	-1.4598E-05	0.32606	0.00015546	476.7822330045041	20.153	0.85494	20.037	19.461	20.316	-0.11592					56	30	2	0	0	0	0.26145	1	2305	2305		2.0598	0.21551	1	193460			52644	12835	30109	30110	64466	64466					0.07245180025711306
VKQWHAFI	8	Unmodified	_VKQWHAFI_					0	0	0			REV__ENST00000495918.1_1_1:183103830-183107010:+|nuORF	REV__ENST00000495918.1_1_1:183103830-183107010:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7870483398438	2	514.787444	1027.56034	0.38502	0.0001982	0.15385	7.9201E-05	0.53887	0.00027741	514.7877355970269	19.961	0.46766	19.905	19.652	20.119	-0.055693					38	16	3	0	0	0	0.45942	1	2373	2373		2.5775	0	1	147550	+		52645	21665	30110	30111	64467	64467					0.04765787750943673
VKRGELQKV	9	Unmodified	_VKRGELQKV_					0	0	0		EHMT2|p.Q660R|1|0.22|ENSG00000204371|chr6:31887609-31887609|T/C|missense_variant	EHMT2|p.Q660R|1|0.22|ENSG00000204371|chr6:31887609-31887609|T/C|missense_variant	EHMT2|p.Q660R|1|0.22|ENSG00000204371|chr6:31887609-31887609|T/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7879028320312	2	528.82984	1055.64513	0.71572	0.00037849	-0.48412	-0.00025602	0.2316	0.00012248	528.829308387337	29.187	0.23871	29.187	29.117	29.355	0					10	8	2	0	0	0	0.25202	1	5193	5193		6.7232	0	1	61688			52646	281	30111	30112	64468	64468					0.11953113496883816
VKRLSHKDTR	10	Unmodified	_VKRLSHKDTR_					0	0	0			REV__ENST00000513726.5_1_4:1932463-1953839:+|nuORF	REV__ENST00000513726.5_1_4:1932463-1953839:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3701171875	2	620.367653	1238.72075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.25	1	117.25	116.75	117.75	0								0	0	0	0.38166	1	30329	30329		1.4819	0.28856	1		+		52647	21828	30112	30113	64469	64469					0.11094090677147506
VKRLSHKDTR	10	Unmodified	_VKRLSHKDTR_					0	0	0			REV__ENST00000513726.5_1_4:1932463-1953839:+|nuORF	REV__ENST00000513726.5_1_4:1932463-1953839:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.36865234375	2	620.367653	1238.72075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.03	1	119.06	118.56	119.56	0.026253								0	0	0	0.38166	1	30804	30804		1.4819	0	1		+		52648	21828	30112	30113	64470	64470					0.11094090677147506
VKRRVVNRP	9	Unmodified	_VKRRVVNRP_					0	0	0		ENST00000372562.1_1_1:42922065-42925274:+|nuORF	ENST00000372562.1_1_1:42922065-42925274:+|nuORF	ENST00000372562.1_1_1:42922065-42925274:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3618774414062	2	562.362173	1122.70979	0.17102	9.6174E-05	-0.57198	-0.00032166	-0.40096	-0.00022548	562.3616408643759	98.207	0.16522	98.268	98.19	98.355	0.061516					37	17	3	0	0	0	0.34536	1	26271	26271		2.0598	0	1	515830			52649	9845	30113	30114	64471	64471					0.15334733093550312
VKRRVVNRP	9	Unmodified	_VKRRVVNRP_					0	0	0		ENST00000372562.1_1_1:42922065-42925274:+|nuORF	ENST00000372562.1_1_1:42922065-42925274:+|nuORF	ENST00000372562.1_1_1:42922065-42925274:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.361572265625	2	562.362173	1122.70979	0.23988	0.0001349	-0.075401	-4.2403E-05	0.16448	9.2499E-05	562.3616841123278	98.184	1.0302	98.178	97.86	98.89	-0.0068207					198	116	3	0	0	0	0.34681	1	26372	26372		1.8442	0.36234	1	644470			52650	9845	30113	30114	64472	64472					0.15334733093550312
VKRRVVNRP	9	Unmodified	_VKRRVVNRP_					0	0	0		ENST00000372562.1_1_1:42922065-42925274:+|nuORF	ENST00000372562.1_1_1:42922065-42925274:+|nuORF	ENST00000372562.1_1_1:42922065-42925274:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	562.362173	1122.70979	-0.075917	-4.2693E-05	-0.28377	-0.00015958	-0.35969	-0.00020227	562.3617798333566	98.248	0.13927	98.248	98.204	98.343	0	0.016536	-8.8905E-05	NaN	2.0598	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343010			52651	9845	30113	30114							0.15334733093550312
VKSEPETR	8	Unmodified	_VKSEPETR_					0	0	0			REV__ENST00000450207.5_2_22:50311905-50312022:+|nuORF	REV__ENST00000450207.5_2_22:50311905-50312022:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.77447509765625	2	473.253631	944.49271	-0.19338	-9.1518E-05	2.4793	0.0011733	2.2859	0.0010818	473.25468728723433	14.651	0.61757	14.651	14.307	14.925	0					36	21	3	0	0	0	0.34247	1	746	746		8.5933	0	1	89500	+		52652	21111	30114	30115	64473	64473					0.01824293029483215
VKSIYDTLRNI	11	Unmodified	_VKSIYDTLRNI_					0	0	0			REV__ENSG00000144746|ENST00000273258|ARL6IP5	REV__ENSG00000144746|ENST00000273258|ARL6IP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.9089050292969	3	441.253993	1320.74015	0.38507	0.00016992	0.1581	6.9761E-05	0.54317	0.00023968	441.25410970966277	32.244	0.9124	32.244	31.953	32.865	0					81	32	4	0	0	0	0.41517	1	6188	6188		9.2438	1.7667	1	413910	+		52653	16259	30115	30116	64474	64474					0.0926100217743624
VKSIYDTLRNI	11	Unmodified	_VKSIYDTLRNI_					0	0	0			REV__ENSG00000144746|ENST00000273258|ARL6IP5	REV__ENSG00000144746|ENST00000273258|ARL6IP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.9091491699219	3	441.253993	1320.74015	0.41775	0.00018433	0.35312	0.00015582	0.77087	0.00034015	441.254104458127	32.178	0.7231	32.22	31.968	32.691	0.042366					61	25	3	0	0	0	0.38765	1	6169	6169		12.856	3.6122	1	515590	+		52654	16259	30115	30116	64475	64475					0.0926100217743624
VKSIYDTLRNI	11	Unmodified	_VKSIYDTLRNI_					0	0	0			REV__ENSG00000144746|ENST00000273258|ARL6IP5	REV__ENSG00000144746|ENST00000273258|ARL6IP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.9090881347656	3	441.253993	1320.74015	0.20541	9.0639E-05	0.40416	0.00017834	0.60957	0.00026898	441.25415469788476	32.164	0.94764	32.205	31.916	32.864	0.040989					72	33	3	0	0	0	0.32824	1	6167	6167		12.856	3.0917	1	429110	+		52655	16259	30115	30116	64476	64476					0.0926100217743624
VKSSFVIPICA	11	Unmodified	_VKSSFVIPICA_					0	0	0			REV__ENST00000257694.12_1_7:108161929-108166538:-|nuORF	REV__ENST00000257694.12_1_7:108161929-108166538:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.3280639648438	2	582.328285	1162.64202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.509	1	20.456	19.956	20.956	-0.05291								0	0	0	0.38071	1	2558	2558		1.4819	0	1		+		52656	19559	30116	30117	64477	64477					0.06720102327903987
VKSTKQIKP	9	Unmodified	_VKSTKQIKP_					0	0	0			REV__ENST00000371394.6_1_9:140611085-140686569:+|nuORF	REV__ENST00000371394.6_1_9:140611085-140686569:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8142700195312	2	514.826766	1027.63898	-0.027706	-1.4264E-05	0.074018	3.8106E-05	0.046312	2.3842E-05	514.8265685671632	12.613	0.28364	12.613	12.468	12.751	0					17	9	3	0	0	0	0.31763	1	167	167		6.2058	0	1	45001	+		52657	20397	30117	30118	64478	64478					0.12626595265396645
VKSTQWEKG	9	Unmodified	_VKSTQWEKG_					0	0	0		ENST00000296873.11_1_5:132093392-132093830:-|nuORF	ENST00000296873.11_1_5:132093392-132093830:-|nuORF	ENST00000296873.11_1_5:132093392-132093830:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7952880859375	2	531.782556	1061.55056	0.20927	0.00011128	-0.68021	-0.00036172	-0.47094	-0.00025044	531.7820732595738	22.635	1.0629	22.548	21.93	22.993	-0.087608					92	38	3	0	0	0	0.33276	1	3164	3164		3.9444	0.3479	1	428360			52658	9196	30118	30119	64479	64479					0.022245549549097632
VKTLFAQI	8	Unmodified	_VKTLFAQI_					0	0	0			REV__ENSG00000142185|ENST00000397928|TRPM2	REV__ENSG00000142185|ENST00000397928|TRPM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.2933044433594	2	460.284203	918.553853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.465	1	82.538	82.038	83.038	0.073097								0	0	0	0.36486	1	21519	21519		7.9102	0.62092	1		+		52659	16105	30119	30120	64480	64480					0.09131849799553038
VKTLKKTQ	8	Unmodified	_VKTLKKTQ_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.8830871582031	2	473.30821	944.601866	-0.20537	-9.7204E-05	-0.74568	-0.00035294	-0.95105	-0.00045014	473.30804955343257	14.184	0.11111	14.184	14.138	14.249	0					5	3	2	0	0	0	0.34445	1	637	637		0	0	1	19350			52660	7612	30120	30121	64481	64481					0.1273492371959719
VKTWHERNS	9	Unmodified	_VKTWHERNS_					0	0	0			REV__nc|ENSG00000186642|O00408-5|PDE2A	REV__nc|ENSG00000186642|O00408-5|PDE2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.31396484375	2	578.796529	1155.5785	0.29639	0.00017155	-0.80643	-0.00046676	-0.51005	-0.00029521	578.7959073667957	28.911	0.48152	28.907	28.72	29.202	-0.0042572					32	16	3	0	0	0	0.25989	1	5146	5146		14.838	1.2234	1	343000	+		52661	18456	30121	30122	64482	64482					0.006938779349866309
VKTWPAGL	8	Unmodified	_VKTWPAGL_					0	0	0			REV__ENST00000427455.1_2_7:35733909-35733957:-|nuORF	REV__ENST00000427455.1_2_7:35733909-35733957:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.2538757324219	2	436.255446	870.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.384	1	74.436	73.936	74.936	0.052361								0	0	0	0.35985	1	19051	19051		10.183	0	1		+		52662	20911	30122	30123	64483	64483					0.055910075939777926
VKVLFVRNLAN	11	Unmodified	_VKVLFVRNLAN_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;chr6:85641451-85641990|481|13.22|0.81|4.04|-|ENST00000677059|SYNCRIP,SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP;ENST00000434910.1_1_20:6195317-6195437:+|nuORF	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.9328308105469	3	424.931073	1271.77139	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.856	1	84.856	84.356	85.356	0								0	0	0	0.37637	1	22262	22262		2.4348	1.9803	1				52663	174	30123	30124	64484	64484					0.14637620002190488
VKVLLFLHI	9	Unmodified	_VKVLLFLHI_					0	0	0		chr11:103391535-103399663|312|10.06|0.06|7.28|+|2|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|11	chr11:103391535-103399663|312|10.06|0.06|7.28|+|2|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|11	chr11:103391535-103399663|312|10.06|0.06|7.28|+|2|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.358154296875	2	541.360245	1080.70594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.121	1	13.053	12.553	13.553	-0.067496								0	0	0	0.26704	1	329	329		0.6015	0.076735	1				52664	124	30124	30125	64485	64485					0.1688125054711236
VKVPVLPL	8	Unmodified	_VKVPVLPL_					0	0	0			REV__nc|ENSG00000057657|O75626-3|PRDM1	REV__nc|ENSG00000057657|O75626-3|PRDM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.21087646484375	2	432.799489	863.584425	-0.012196	-5.2783E-06	-0.010825	-4.6849E-06	-0.023021	-9.9633E-06	432.79939460609273	65.547	0.93414	65.547	65.218	66.152	0					50	33	2	0	0	0	0.34337	1	16539	16539		5.2307	0	1	370560	+		52665	13601	30125	30126	64486	64486					0.1471762818461002
VKVPVLPL	8	Unmodified	_VKVPVLPL_					0	0	0			REV__nc|ENSG00000057657|O75626-3|PRDM1	REV__nc|ENSG00000057657|O75626-3|PRDM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.2109069824219	2	432.799489	863.584425	-0.24443	-0.00010579	0.10922	4.727E-05	-0.13522	-5.8521E-05	432.79951141557	65.476	0.80916	65.565	65.216	66.025	0.088882					54	29	2	0	0	0	0.34337	1	16449	16449		5.2307	0	1	388720	+		52666	13601	30125	30126	64487	64487					0.1471762818461002
VKVPVLPL	8	Unmodified	_VKVPVLPL_					0	0	0			REV__nc|ENSG00000057657|O75626-3|PRDM1	REV__nc|ENSG00000057657|O75626-3|PRDM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.21087646484375	2	432.799489	863.584425	-0.0055109	-2.3851E-06	-0.14084	-6.0956E-05	-0.14635	-6.3341E-05	432.7993833943134	65.551	0.86549	65.54	65.227	66.093	-0.011337					48	30	2	0	0	0	0.34337	1	16485	16485		2.3027	0	1	364850	+		52667	13601	30125	30126	64488	64488					0.1471762818461002
VKVTISKLV	9	Unmodified	_VKVTISKLV_					0	0	0			REV__ENSG00000178409|ENST00000369042|BEND3	REV__ENSG00000178409|ENST00000369042|BEND3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.254638671875	2	493.83406	985.653567	0.53614	0.00026477	-0.82845	-0.00040912	-0.29231	-0.00014435	493.8335495617306	29.82	0.3649	29.82	29.605	29.97	0					22	12	2	0	0	0	0.25779	1	5348	5348		6.2058	1.8765	1	142410	+		52668	18035	30126	30127	64489	64489					0.16016667413509822
VKWFCSFHYWH	11	Unmodified	_VKWFCSFHYWH_					0	0	0			REV__ENSG00000143799|ENST00000366794|PARP1	REV__ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.57568359375	3	513.90453	1538.69176	0.15748	8.0928E-05	-2.2457	-0.0011541	-2.0882	-0.0010732	513.9033237239944	18.592	0.14055	18.592	18.505	18.646	0					7	4	2	0	0	0	0.33303	1	1974	1974		2.4348	1.22	1	17536	+		52669	16201	30127	30128	64490	64490					-0.05603769943468251
VKWFDMENKF	10	Unmodified	_VKWFDMENKF_					0	0	0			REV__ENSG00000162975|ENST00000295082|KCNF1	REV__ENSG00000162975|ENST00000295082|KCNF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.5526428222656	3	448.553274	1342.63799	0.059058	2.6491E-05	-1.3706	-0.00061481	-1.3116	-0.00058832	448.55259469531256	29.396	0.51846	29.41	29.166	29.684	0.013474					36	17	3	0	0	0	0.40344	1	5283	5283		2.8433	0.21205	1	203660	+		52670	17027	30128	30129	64491	64491					-0.019619871658505872
VKWIEELL	8	Unmodified	_VKWIEELL_					0	0	0			REV__ENSG00000179002|ENST00000375371|TAS1R2	REV__ENSG00000179002|ENST00000375371|TAS1R2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.31005859375	2	515.302593	1028.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.732	1	53.788	53.288	54.288	0.056255								0	0	0	0.31323	1	12709	12709		26.884	0	1		+		52671	18055	30129	30130	64492	64492					0.07748101625475101
VKWKFKGR	8	Unmodified	_VKWKFKGR_					0	0	0		nc|ENSG00000196776|Q08722-2|CD47;nc|ENSG00000196776|Q08722-3|CD47;nc|ENSG00000196776|Q08722-4|CD47;ENSG00000196776|ENST00000361309|CD47	nc|ENSG00000196776|Q08722-2|CD47	nc|ENSG00000196776|Q08722-2|CD47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3096923828125	2	524.824361	1047.63417	0.32913	0.00017273	0.94884	0.00049798	1.278	0.00067071	525.3255972303825	96.58	0.042305	96.65	96.623	96.665	0.070465					5	3	2	0	0	0	0.46022	1	25817	25817		2.3027	0.4585	1	17916			52672	7903	30130	30131	64493	64493					0.1122575591327859
VKWTAPEALNY	11	Unmodified	_VKWTAPEALNY_					0	0	0		ENST00000464684.5_1_15:91434747-91438785:+|nuORF;nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES	ENST00000464684.5_1_15:91434747-91438785:+|nuORF	ENST00000464684.5_1_15:91434747-91438785:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.3380737304688	2	646.337695	1290.66084	0.17912	0.00011577	-0.5485	-0.00035452	-0.36938	-0.00023875	646.3375290988305	22.97	1.2912	22.882	22.599	23.89	-0.08761					145	45	5	0	0	0	0.46819	1	3572	3572		2.2828	0.19677	1	4835200			52673	7297	30131	30132	64494	64494					0.02713355223295366
VKWWREVIVT	10	Unmodified	_VKWWREVIVT_					0	0	0			REV__ENST00000462783.1_1_1:151735406-151735955:-|nuORF	REV__ENST00000462783.1_1_1:151735406-151735955:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.875244140625	3	439.255557	1314.74484	0.12256	5.3834E-05	-3.386	-0.0014873	-3.2634	-0.0014335	439.58854193887396	50.087	0.26381	50.087	49.953	50.217	0					13	9	2	0	0	0	0.32051	1	11596	11596		3.8763	1.97	1	171530	+		52674	16178	30132	30133	64495	64495					0.1000593111082253
VKYIVSQYLVK	11	Unmodified	_VKYIVSQYLVK_					0	0	0			REV__ENST00000231790.6_1_3:37092156-37092249:+|nuORF	REV__ENST00000231790.6_1_3:37092156-37092249:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.7422180175781	3	447.270984	1338.79112	0.2428	0.0001086	0.78563	0.00035139	1.0284	0.00045999	447.27115479828444	43.264	1.632	43.348	42.71	44.342	0.083992					108	60	3	0	0	0	0.3331	1	9743	9743		2.2527	0.79761	1	469550	+		52675	19467	30133	30134	64496	64496					0.1352795122227235
VKYKRKFRS	9	Unmodified	_VKYKRKFRS_					0	0	0			REV__ENST00000598285.1_1_19:48259921-48260259:+|nuORF	REV__ENST00000598285.1_1_19:48259921-48260259:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3716430664062	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.88	1	117.88	117.38	118.38	0								0	0	0	0.26704	1	30471	30471		0.6015	0	1		+		52676	22615	30134	30135	64497	64497					0.13292484033490837
VKYLRLDR	8	Unmodified	_VKYLRLDR_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3;ENST00000539442.1_1_12:65639428-65640102:+|nuORF	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2935180664062	2	531.824558	1061.63456	0.4815	0.00025607	0.26013	0.00013834	0.74163	0.00039442	531.8246787887873	31.645	0.61521	31.686	31.334	31.949	0.040991					28	21	2	0	0	0	0.34294	1	5830	5830		7.2892	0.56607	1	309090			52677	6771	30135	30136	64498	64498					0.10621130842446291
VKYLRLDR	8	Unmodified	_VKYLRLDR_					0	0	0		ENSG00000174106|ENST00000308330|LEMD3;ENST00000539442.1_1_12:65639428-65640102:+|nuORF	ENSG00000174106|ENST00000308330|LEMD3	ENSG00000174106|ENST00000308330|LEMD3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.824558	1061.63456	0.42516	0.00022611	0.022137	1.1773E-05	0.4473	0.00023789	531.8245836020322	31.665	0.45026	31.665	31.45	31.9	0	-0.010508	-0.00010679	NaN	7.2892	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236150			52678	6771	30135	30136							0.10621130842446291
VLADKHLQAQ	10	Unmodified	_VLADKHLQAQ_					0	0	0			REV__nc|ENSG00000133401|O15018-2|PDZD2	REV__nc|ENSG00000133401|O15018-2|PDZD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2850952148438	2	561.81693	1121.61931	0.55448	0.00031152	2.1131	0.0011872	2.6676	0.0014987	561.8180395582615	54.672	0.53544	54.656	54.389	54.924	-0.015923					38	18	3	0	0	0	0.3144	1	12983	12983		5.2969	0	1	811030	+		52679	15622	30136	30137	64499	64499					0.06336219254603748
VLAEAYLNI	9	Unmodified	_VLAEAYLNI_					0	0	0			REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.77423095703125	2	503.2844	1004.55425	0.31762	0.00015985	1.1904	0.00059909	1.508	0.00075894	503.78669141060567	49.72	0.44101	49.765	49.566	50.007	0.044891					22	16	2	0	0	0	0.20167	1	11471	11471		17.113	2.2746	1	161310	+		52680	13442	30137	30138	64500	64500					0.0521522472874949
VLAEELIFR	9	Unmodified	_VLAEELIFR_					0	0	0		nc|ENSG00000170500|Q1L5Z9-2|LONRF2;ENSG00000170500|ENST00000393437|LONRF2	nc|ENSG00000170500|Q1L5Z9-2|LONRF2	nc|ENSG00000170500|Q1L5Z9-2|LONRF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3173217773438	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.02	1	115	114.5	115.5	-0.020988								0	0	0	0.26513	1	29841	29841		1.4819	0.15237	1				52681	6457	30138	30139	64501	64501					0.08222889028479585
VLAFLHALS	9	Unmodified	_VLAFLHALS_					0	0	0			REV__ENST00000395474.7_2_3:49053065-49053377:+|nuORF	REV__ENST00000395474.7_2_3:49053065-49053377:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7998352050781	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.265	1	60.265	59.765	60.765	0								0	0	0	0.23091	1	14727	14727		12.532	0	1		+		52682	20635	30139	30140	64502	64502					0.07875252173846548
VLAGGGGLRKL	11	Unmodified	_VLAGGGGLRKL_					0	0	0			REV__ENST00000529425.5_3_11:74173038-74175340:-|nuORF	REV__ENST00000529425.5_3_11:74173038-74175340:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2984619140625	2	520.832383	1039.65021	-0.88645	-0.00046169	0.019704	1.0263E-05	-0.86674	-0.00045143	520.8322452708538	34.728	0.67175	34.728	34.472	35.144	0					37	23	2	0	0	0	0.33085	1	6812	6812		3.2813	1.2216	1	425940	+		52683	21951	30140	30141	64503	64503					0.13197417359515384
VLAHSVLLGP	10	Unmodified	_VLAHSVLLGP_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.2659912109375	2	503.30821	1004.60187	0.3405	0.00017137	-2.0349	-0.0010242	-1.6944	-0.00085281	503.3066451008043	67.888	0.51151	67.888	67.536	68.048	0					30	17	3	0	0	0	0.27772	1	17099	17099		20.454	4.6064	1	237950			52684	679	30141	30142	64504	64504					0.09974923719630624
VLAKEYDEL	9	Unmodified	_VLAKEYDEL_					0	0	0			REV__ENSG00000149292|ENST00000529221|TTC12	REV__ENSG00000149292|ENST00000529221|TTC12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7849731445312	2	540.284597	1078.55464	0.45385	0.00024521	0.070127	3.7888E-05	0.52397	0.00028309	540.2853586541214	81.058	0.82289	81.058	80.681	81.504	0					114	39	4	0	0	0	0.12642	1	21183	21183		34.402	1.616	1	663710	+		52685	16458	30142	30143	64505	64505					0.018505996579506245
VLANEAAALN	10	Unmodified	_VLANEAAALN_					0	0	0		nc|ENSG00000178965|Q5RHP9-2|ERICH3;ENST00000433746.2_1_1:75036803-75045091:-|nuORF;ENSG00000178965|ENST00000326665|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.323974609375	2	493.269281	984.52401	0.19038	9.3909E-05	0.37946	0.00018717	0.56984	0.00028108	493.2698048818838	41.008	0.32882	41.008	40.847	41.175	0					14	11	2	0	0	0	0.29589	1	8754	8754		12.241	4.3305	1	76229			52686	7090	30143	30144	64506	64506					0.03112866063565889
VLAPEGSVPNK	11	Unmodified	_VLAPEGSVPNK_					0	0	0		ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2;ENST00000507947.5_1_4:76580183-76582836:-|nuORF	ENSG00000138757|ENST00000359707|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2984008789062	2	555.811313	1109.60807	0.02867	1.5935E-05	0.39115	0.0002174	0.41982	0.00023334	555.8115772450878	31.29	0.35856	31.333	31.156	31.515	0.042366					17	12	2	0	0	0	0.32557	1	5821	5821		15.248	2.206	1	132720			52687	4187	30144	30145	64507	64507					0.057653971604850085
VLAPEGSVPNK	11	Unmodified	_VLAPEGSVPNK_					0	0	0		ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2;ENST00000507947.5_1_4:76580183-76582836:-|nuORF	ENSG00000138757|ENST00000359707|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	555.811313	1109.60807	0.10159	5.6466E-05	0.74965	0.00041667	0.85125	0.00047313	555.8117848181065	31.337	0.30013	31.337	31.202	31.502	0	0.0019944	0.00032094	NaN	15.248	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94727			52688	4187	30144	30145							0.057653971604850085
VLAPPRCTIKP	11	Unmodified	_VLAPPRCTIKP_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;nc|ENSG00000100979|P55058-4|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8565673828125	2	597.855001	1193.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.301	1	93.387	92.887	93.887	0.08667								0	0	0	0.37501	1	24842	24842		2.7352	0.89096	1				52689	1650	30145	30146	64508	64508					0.10634899830392897
VLAPPRCTIKP	11	Unmodified	_VLAPPRCTIKP_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;nc|ENSG00000100979|P55058-4|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.856201171875	2	597.855001	1193.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.12	1	95.118	94.618	95.618	-0.0020142								0	0	0	0.37501	1	25401	25401		2.7352	0.89096	1				52690	1650	30145	30146	64509	64509					0.10634899830392897
VLAPRLPSL	9	Unmodified	_VLAPRLPSL_					0	0	0			REV__ENST00000491277.1_1_1:214706191-214706551:-|nuORF	REV__ENST00000491277.1_1_1:214706191-214706551:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.80303955078125	2	483.310752	964.606951	-0.21332	-0.0001031	0.44874	0.00021688	0.23542	0.00011378	483.3109675834289	65.266	0.43608	65.354	65.11	65.547	0.088882					21	15	2	0	0	0	0.25989	1	16265	16265		14.838	0.93222	1	181500	+		52691	21612	30146	30147	64510	64510					0.1232322758223745
VLAQWLPSL	9	Unmodified	_VLAQWLPSL_					0	0	0		ENSG00000160796|ENST00000450053|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	ENSG00000160796|ENST00000450053|NBEAL2	ENSG00000160796|ENST00000450053|NBEAL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.8023071289062	2	513.80276	1025.59097	0.45144	0.00023195	-0.56136	-0.00028843	-0.10992	-5.6477E-05	513.8021298440896	66.431	1.0133	66.431	65.981	66.994	0					86	35	4	0	0	0	0.1939	1	16642	16642		24.021	0	1	675200			52692	5489	30147	30148	64511	64511					0.0791952134532039
VLASPQVKREV	11	Unmodified	_VLASPQVKREV_					0	0	0		ENST00000508215.1_1_5:110842026-110848199:-|nuORF;ENST00000510346.5_1_5:110836746-110848166:-|nuORF	ENST00000508215.1_1_5:110842026-110848199:-|nuORF	ENST00000508215.1_1_5:110842026-110848199:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.3783569335938	2	613.366787	1224.71902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.496	1	86.496	85.996	86.996	0								0	0	0	0.37707	1	22768	22768		2.2828	0	1				52693	11347	30148	30149	64512	64512					0.11565036868569223
VLASQLLVL	9	Unmodified	_VLASQLLVL_					0	0	0		ENST00000491005.5_1_1:220324899-220327342:-|nuORF;ENSG00000118873|ENST00000358951|RAB3GAP2	ENST00000491005.5_1_1:220324899-220327342:-|nuORF	ENST00000491005.5_1_1:220324899-220327342:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7400817871094	2	478.312961	954.611368	0.70798	0.00033864	0.64724	0.00030958	1.3552	0.00064822	478.3135299986622	78.513	0.65182	78.482	78.034	78.686	-0.030434					34	24	2	0	0	0	0.1939	1	20301	20301		30.637	1.555	1	93371			52694	2847	30149	30150	64513	64513					0.13224692005132965
VLASRGPR	8	Unmodified	_VLASRGPR_					0	0	0			REV__ENSG00000177303|ENST00000321617|CASKIN2	REV__ENSG00000177303|ENST00000321617|CASKIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.2615661621094	2	428.261594	854.508634	-0.20979	-8.9845E-05	0.16087	6.8896E-05	-0.048916	-2.0949E-05	428.2616366316765	80.491	1.9251	80.556	80.157	82.082	0.065094					155	85	2	0	0	0	0.45169	2	20882	20882;20977		5.2307	0	1	14228000	+		52695	17981	30150	30151	64514;64515	64514					0.07556044057048439
VLASVTASLK	10	Unmodified	_VLASVTASLK_					0	0	0		nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18	nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.27716064453125	2	494.8055	987.596446	0.41616	0.00020592	-0.62655	-0.00031002	-0.21039	-0.0001041	494.8051155512257	23.64	0.42576	23.602	23.339	23.765	-0.038927					21	14	2	0	0	0	0.31358	1	3493	3493		13.906	0	1	87356			52696	12631	30151	30152	64516	64516					0.10215200137133706
VLAVNVRE	8	Unmodified	_VLAVNVRE_					0	0	0			REV__ENSG00000147324|ENST00000276282|MFHAS1	REV__ENSG00000147324|ENST00000276282|MFHAS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7997741699219	2	450.269084	898.523616	0.33254	0.00014973	0.89883	0.00040472	1.2314	0.00055445	450.2695382625213	66.409	0.81067	66.409	66.183	66.994	0					39	28	2	0	0	0	0.34218	1	16569	16569		9.3474	0	1	152000	+		52697	16383	30152	30153	64517	64517					0.07029491134380805
VLAVPRILG	9	Unmodified	_VLAVPRILG_					0	0	0			REV__ENSG00000162337|ENST00000294304|LRP5	REV__ENSG00000162337|ENST00000294304|LRP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.234619140625	2	469.313295	936.612037	0.48258	0.00022648	0.1253	5.8804E-05	0.60788	0.00028528	469.3133263408587	50.972	0.38703	50.981	50.807	51.194	0.0095634					25	14	2	0	0	0	0.25526	1	11916	11916		7.9102	0	1	269010	+		52698	16971	30153	30154	64518	64518					0.14119531444850963
VLAVPRILG	9	Unmodified	_VLAVPRILG_					0	0	0			REV__ENSG00000162337|ENST00000294304|LRP5	REV__ENSG00000162337|ENST00000294304|LRP5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	469.313295	936.612037	0.28014	0.00013147	-0.031749	-1.49E-05	0.24839	0.00011657	469.31315416598966	50.981	0.34863	51.028	50.848	51.196	0.046574	0.023434	-8.7703E-05	NaN	7.9102	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211580	+		52699	16971	30153	30154							0.14119531444850963
VLAVQINQD	9	Unmodified	_VLAVQINQD_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2;ENST00000587275.1_1_19:56173897-56175127:+|nuORF	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.8072814941406	2	500.277106	998.53966	0.26394	0.00013204	-0.11841	-5.9238E-05	0.14553	7.2806E-05	500.7773821344269	69.317	0.43626	69.295	69.026	69.462	-0.022087					18	14	2	0	0	0	0.25417	1	17481	17481		4.756	4.2312	1	182420			52700	774	30154	30155	64519	64519					0.040331525806209356
VLAWRPPGC	9	Unmodified	_VLAWRPPGC_					0	0	0		ENST00000526097.1_1_8:11418748-11418844:+|nuORF	ENST00000526097.1_1_8:11418748-11418844:+|nuORF	ENST00000526097.1_1_8:11418748-11418844:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.76593017578125	2	499.765655	997.516756	0.19331	9.6612E-05	0.037889	1.8936E-05	0.2312	0.00011555	499.7655391814666	69.438	0.98563	69.438	69.037	70.023	0					90	35	4	0	0	0	0.20344	1	17517	17517		23.148	0	1	977090			52701	11548	30155	30156	64520	64520					0.01789854982155248
VLCFRGFVP	9	Unmodified	_VLCFRGFVP_					0	0	0		ENST00000509634.5_1_5:43122047-43122137:+|nuORF	ENST00000509634.5_1_5:43122047-43122137:+|nuORF	ENST00000509634.5_1_5:43122047-43122137:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7611083984375	2	519.28368	1036.55281	0.22316	0.00011588	-3.8286	-0.0019881	-3.6054	-0.0018722	519.783956102506	73.425	0.69431	73.425	73.133	73.828	0					32	24	2	0	0	0	0.24739	1	18752	18752		8.5933	3.8373	1	133170			52702	11361	30156	30157	64521	64521					0.035993121590308874
VLCIIPWI	8	Unmodified	_VLCIIPWI_					0	0	0		nc|ENSG00000070269|Q9NX78-2|TMEM260;ENST00000557657.5_1_14:57046563-57079004:+|nuORF;ENST00000557626.5_1_14:57046563-57082746:+|nuORF;nc|ENSG00000070269|Q9NX78-3|TMEM260;ENSG00000070269|ENST00000261556|TMEM260	nc|ENSG00000070269|Q9NX78-2|TMEM260	nc|ENSG00000070269|Q9NX78-2|TMEM260	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7850341796875	2	478.785524	955.556496	0.40854	0.0001956	-0.69815	-0.00033427	-0.28962	-0.00013866	478.78518937219616	84.54	0.71422	84.54	84.205	84.92	0					49	26	2	0	0	0	0.43455	1	22108	22108		11.114	1.767	1	468310			52703	920	30157	30158	64522	64522					0.0769398193286861
VLCIIPWI	8	Unmodified	_VLCIIPWI_					0	0	0		nc|ENSG00000070269|Q9NX78-2|TMEM260;ENST00000557657.5_1_14:57046563-57079004:+|nuORF;ENST00000557626.5_1_14:57046563-57082746:+|nuORF;nc|ENSG00000070269|Q9NX78-3|TMEM260;ENSG00000070269|ENST00000261556|TMEM260	nc|ENSG00000070269|Q9NX78-2|TMEM260	nc|ENSG00000070269|Q9NX78-2|TMEM260	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.794189453125	2	478.785524	955.556496	0.32123	0.0001538	-0.23464	-0.00011234	0.086583	4.1455E-05	478.78538045672474	82.087	1.6557	82.063	81.583	83.239	-0.024048					149	66	4	0	0	0	0.41716	1	21721	21721		17.087	17.087	1	5519000			52704	920	30157	30158	64523	64523					0.0769398193286861
VLCIPWLL	8	Unmodified	_VLCIPWLL_					0	0	0		ENST00000553863.5_1_14:77771036-77772802:-|nuORF	ENST00000553863.5_1_14:77771036-77772802:-|nuORF	ENST00000553863.5_1_14:77771036-77772802:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.27728271484375	2	478.785524	955.556496	0.30814	0.00014753	-0.37596	-0.00018	-0.06782	-3.2471E-05	478.78533459141096	87.065	0.93638	87.153	86.502	87.438	0.08709					57	39	2	0	0	0	0.44842	1	22845	22845		6.3541	0	1	260890			52705	11825	30158	30159	64524	64524					0.0769398193286861
VLCLLWLP	8	Unmodified	_VLCLLWLP_					0	0	0			REV__CACHD1|p.Y167Sfs*12|1|0.3|ENSG00000158966|chr1:64632607-64632607|A/-|frameshift_variant	REV__CACHD1|p.Y167Sfs*12|1|0.3|ENSG00000158966|chr1:64632607-64632607|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7853698730469	2	478.785524	955.556496	0.47805	0.00022888	-0.87089	-0.00041697	-0.39284	-0.00018809	478.7851089278384	84.426	0.87066	84.503	84.123	84.994	0.077095					57	34	2	0	0	0	0.44842	1	22149	22149		6.3541	0	1	336890	+		52706	13134	30159	30160	64525	64525					0.0769398193286861
VLDKLSKSKHV	11	Unmodified	_VLDKLSKSKHV_					0	0	0			REV__ENST00000469356.3_1_17:17720899-17721766:-|nuORF	REV__ENST00000469356.3_1_17:17720899-17721766:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.380859375	2	627.382437	1252.75032	-0.03381	-2.1212E-05	-0.44458	-0.00027892	-0.47839	-0.00030013	627.3817675327402	103.2	0.67025	103.2	102.88	103.55	0					238	97	3	0	0	0	0.46277	1	27422	27422		2.9952	0	1	27440000	+		52707	13758	30160	30161	64526	64526					0.1340560990265658
VLDLCNVY	8	Unmodified	_VLDLCNVY_					0	0	0			REV__ENST00000580893.5_1_17:62486773-62489133:-|nuORF	REV__ENST00000580893.5_1_17:62486773-62489133:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7387390136719	2	469.736228	937.457904	0.088711	4.1671E-05	4.3216	0.00203	4.4103	0.0020717	469.73788993777436	22.139	0.34459	22.038	21.86	22.205	-0.10034					22	12	2	0	0	0	0.4419	1	3044	3044		8.5933	0.68312	1	62929	+		52708	19252	30161	30162	64527	64527					-0.013326661028372655
VLDLFLLSMK	10	Unmodified	_VLDLFLLSMK_					0	0	0		ENST00000302764.8_1_5:162880677-162880902:-|nuORF	ENST00000302764.8_1_5:162880677-162880902:-|nuORF	ENST00000302764.8_1_5:162880677-162880902:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.845947265625	2	589.84631	1177.67807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.81	1	112.81	112.31	113.31	0								0	0	0	0.37925	1	29310	29310		2.4985	1.0166	1				52709	9240	30162	30163	64528	64528					0.0963355950470941
VLDLFLLSMK	10	Unmodified	_VLDLFLLSMK_					0	0	0		ENST00000302764.8_1_5:162880677-162880902:-|nuORF	ENST00000302764.8_1_5:162880677-162880902:-|nuORF	ENST00000302764.8_1_5:162880677-162880902:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8452758789062	2	589.84631	1177.67807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.58	1	111.57	111.07	112.07	-0.013939								0	0	0	0.37925	1	29027	29027		2.4985	0.65425	1				52710	9240	30162	30163	64529	64529					0.0963355950470941
VLDLSKPTF	9	Unmodified	_VLDLSKPTF_					0	0	0		ENST00000396842.6_1_3:15480661-15480712:+|nuORF	ENST00000396842.6_1_3:15480661-15480712:+|nuORF	ENST00000396842.6_1_3:15480661-15480712:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2738952636719	2	510.292225	1018.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.892	1	79.954	79.454	80.454	0.061417								0	0	0	0.22065	1	20726	20726		15.847	1.9411	1				52711	10124	30163	30164	64530	64530					0.06135511245804537
VLDLVEVL	8	Unmodified	_VLDLVEVL_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000574547.5_1_17:4442712-4447986:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2664794921875	2	450.276044	898.537535	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.138	1	42.23	41.73	42.73	0.091362								0	0	0	0.35779	1	9139	9139		11.114	0	1				52712	3627	30164	30165	64531	64531					0.08420723842812095
VLDMYMTL	8	Unmodified	_VLDMYMTL_					0	0	0			REV__ENSG00000015133|ENST00000389857|CCDC88C	REV__ENSG00000015133|ENST00000389857|CCDC88C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.3057556152344	2	493.240289	984.466026	0.37749	0.00018619	-2.4871	-0.0012267	-2.1096	-0.0010405	493.239003890189	70.155	0.404	70.155	69.869	70.273	0					21	14	2	0	0	0	0.31375	1	17749	17749		19.439	1.304	1	95281	+		52713	13451	30165	30166	64532	64532					-0.026828551777043685
VLDMYMTL	8	Unmodified	_VLDMYMTL_					0	0	0			REV__ENSG00000015133|ENST00000389857|CCDC88C	REV__ENSG00000015133|ENST00000389857|CCDC88C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.3056945800781	2	493.240289	984.466026	0.35395	0.00017458	-1.6638	-0.00082063	-1.3098	-0.00064605	493.23901354347254	70.042	0.50176	70.108	69.91	70.412	0.06604					27	17	3	0	0	0	0.31375	1	17733	17733		26.341	5.4701	1	109400	+		52714	13451	30165	30166	64533	64533					-0.026828551777043685
VLDPTLRKAQL	11	Unmodified	_VLDPTLRKAQL_					0	0	0			REV__nc|ENSG00000147113|Q9H7Y0-2|DIPK2B	REV__nc|ENSG00000147113|Q9H7Y0-2|DIPK2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.3809814453125	2	627.382437	1252.75032	-0.03381	-2.1212E-05	-0.44458	-0.00027892	-0.47839	-0.00030013	627.3817675327402	103.2	0.67025	103.2	102.88	103.55	0					238	97	3	0	0	0	0.46277	1	27491	27491		2.9952	0	1	27440000	+		52715	16371	30166	30167	64534	64534					0.1340560990265658
VLDPTLRKAQL	11	Unmodified	_VLDPTLRKAQL_					0	0	0			REV__nc|ENSG00000147113|Q9H7Y0-2|DIPK2B	REV__nc|ENSG00000147113|Q9H7Y0-2|DIPK2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.8840942382812	2	627.382437	1252.75032	-0.033487	-2.1009E-05	-0.6194	-0.0003886	-0.65289	-0.00040961	627.3816317037266	103.61	1.0906	103.61	103.49	104.58	0					325	150	3	0	0	0	0.46277	1	27651	27651		2.9952	0.93549	1	28103000	+		52716	16371	30166	30167	64535	64535					0.1340560990265658
VLDQNAVN	8	Unmodified	_VLDQNAVN_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.25335693359375	2	436.727249	871.439946	-0.14149	-6.1794E-05	0.015622	6.8224E-06	-0.12587	-5.4972E-05	436.7272331445793	25.854	0.60318	25.831	25.608	26.212	-0.022236					33	21	2	0	0	0	0.3366	1	4247	4247		18.135	0	1	169930			52717	2767	30167	30168	64536	64536					-0.0009166503333517539
VLDRAPGSA	9	Unmodified	_VLDRAPGSA_					0	0	0			REV__ENSG00000167600|ENST00000310054|CYP2S1	REV__ENSG00000167600|ENST00000310054|CYP2S1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.6018981933594	2	443.243067	884.47158	0.15166	6.7224E-05	-0.24627	-0.00010916	-0.094608	-4.1934E-05	443.2429919473453	22.054	0.96211	22.054	21.601	22.563	0					45	34	2	0	0	0	0.2451	1	2998	2998		15.847	2.3393	1	176620	+		52718	17393	30168	30169	64537	64537					0.024723277206248895
VLDRAPGSA	9	Unmodified	_VLDRAPGSA_					0	0	0			REV__ENSG00000167600|ENST00000310054|CYP2S1	REV__ENSG00000167600|ENST00000310054|CYP2S1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.6019592285156	2	443.243067	884.47158	0.10272	4.5528E-05	0.3577	0.00015855	0.46042	0.00020408	443.2431918833213	22.103	0.66674	22.003	21.804	22.471	-0.10034					37	24	2	0	0	0	0.24688	1	2991	2991		14.838	2.3067	1	184410	+		52719	17393	30168	30169	64538	64538					0.024723277206248895
VLDRAPGSA	9	Unmodified	_VLDRAPGSA_					0	0	0			REV__ENSG00000167600|ENST00000310054|CYP2S1	REV__ENSG00000167600|ENST00000310054|CYP2S1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.6019592285156	2	443.243067	884.47158	0.090528	4.0126E-05	0.035153	1.5581E-05	0.12568	5.5707E-05	443.24309467440656	22.122	1.0131	22.072	21.661	22.674	-0.049377					49	35	2	0	0	0	0.2451	1	3014	3014		15.847	2.3393	1	146030	+		52720	17393	30168	30169	64539	64539					0.024723277206248895
VLDRDRWSWDR	11	Unmodified	_VLDRDRWSWDR_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7921447753906	3	501.919896	1502.73786	0.25842	0.00012971	-0.69661	-0.00034964	-0.43819	-0.00021993	502.25346322293154	22.069	0.25609	22.069	21.966	22.222	0					11	8	2	0	0	0	0.33326	1	3022	3022		1.4551	0	1	37786			52721	2578	30169	30170	64540	64540					0.006599664923214732
VLDTPRTR	8	Unmodified	_VLDTPRTR_					0	0	0			REV__ENSG00000162510|ENST00000373765|MATN1	REV__ENSG00000162510|ENST00000373765|MATN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2773742675781	2	479.277441	956.540328	0.25052	0.00012007	-0.092943	-4.4546E-05	0.15758	7.5525E-05	479.27726181960276	71.971	1.9573	71.971	71.233	73.191	0					154	70	3	0	0	0	0.45015	1	18237	18237		5.7604	0	1	959500	+		52722	16986	30170	30171	64541	64541					0.060319920203255606
VLDTPRTR	8	Unmodified	_VLDTPRTR_					0	0	0			REV__ENSG00000162510|ENST00000373765|MATN1	REV__ENSG00000162510|ENST00000373765|MATN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2776794433594	2	479.277441	956.540328	0.36689	0.00017584	-0.17516	-8.395E-05	0.19173	9.1893E-05	479.2772156005125	71.983	1.9999	71.956	71.211	73.211	-0.027275					217	71	4	0	0	0	0.45015	1	18217	18217		5.7604	0	1	1020000	+		52723	16986	30170	30171	64542	64542					0.060319920203255606
VLEAVKQPF	9	Unmodified	_VLEAVKQPF_					0	0	0		ENST00000175091.4_1_2:20251271-20251391:-|nuORF	ENST00000175091.4_1_2:20251271-20251391:-|nuORF	ENST00000175091.4_1_2:20251271-20251391:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.28271484375	2	515.800217	1029.58588	0.14462	7.4593E-05	0.013753	7.0939E-06	0.15837	8.1687E-05	515.8003877025589	57.716	1.1572	57.699	57.31	58.467	-0.0172					83	42	3	0	0	0	0.23775	1	13864	13864		18.135	2.2878	1	1257900			52724	8788	30171	30172	64543	64543					0.07227217482704873
VLEAWLHA	8	Unmodified	_VLEAWLHA_					0	0	0			REV__CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant	REV__CLTC|p.N1492Kfs*34|1|0.12|ENSG00000141367|chr17:59685097-59685097|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7872009277344	2	469.758352	937.502152	0.088125	4.1397E-05	0.41926	0.00019695	0.50738	0.00023835	469.75882121231274	53.848	0.2616	53.904	53.794	54.056	0.056255					10	9	2	0	0	0	0.34185	1	12772	12772		10.183	4.423	1	122410	+		52725	13233	30172	30173	64544	64544					0.030901061056624712
VLECFASR	8	Unmodified	_VLECFASR_					0	0	0		ENST00000308278.12_1_17:645664-646063:+|nuORF	ENST00000308278.12_1_17:645664-646063:+|nuORF	ENST00000308278.12_1_17:645664-646063:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.7555847167969	2	462.73402	923.453487	0.11561	5.3497E-05	-2.3515	-0.0010881	-2.2359	-0.0010346	462.73221787777413	62.714	0.47145	62.81	62.57	63.042	0.095722					22	16	2	0	0	0	0.34046	1	15520	15520		14.582	0	1	121040			52726	9289	30173	30174	64545	64545					-0.011301305257461536
VLEDIAKFFK	10	Unmodified	_VLEDIAKFFK_					0	0	0		ENST00000509220.1_1_4:47462124-47465668:-|nuORF;ENSG00000169019|ENST00000381571|COMMD8	ENST00000509220.1_1_4:47462124-47465668:-|nuORF	ENST00000509220.1_1_4:47462124-47465668:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2394714355469	3	403.90078	1208.68051	0.022624	9.1381E-06	0.74883	0.00030245	0.77145	0.00031159	403.9010722844282	26.641	0.68117	26.619	26.409	27.09	-0.022236					40	23	2	0	0	0	0.31911	1	4357	4357		6.6304	2.4409	1	128290			52727	6321	30174	30175	64546	64546					0.08451731234026738
VLEDIAKFFK	10	Unmodified	_VLEDIAKFFK_					0	0	0		ENST00000509220.1_1_4:47462124-47465668:-|nuORF;ENSG00000169019|ENST00000381571|COMMD8	ENST00000509220.1_1_4:47462124-47465668:-|nuORF	ENST00000509220.1_1_4:47462124-47465668:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	403.90078	1208.68051	-0.18407	-7.4347E-05	0.94925	0.0003834	0.76517	0.00030905	403.9011722481767	26.621	0.71311	26.621	26.35	27.063	0	-0.013749	6.0893E-05	NaN	6.6304	34	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120770			52728	6321	30174	30175							0.08451731234026738
VLEDIAKFFK	10	Unmodified	_VLEDIAKFFK_					0	0	0		ENST00000509220.1_1_4:47462124-47465668:-|nuORF;ENSG00000169019|ENST00000381571|COMMD8	ENST00000509220.1_1_4:47462124-47465668:-|nuORF	ENST00000509220.1_1_4:47462124-47465668:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	403.90078	1208.68051	-0.23047	-9.3087E-05	0.98321	0.00039712	0.75274	0.00030403	403.90131371302874	26.704	0.59521	26.665	26.342	26.938	-0.038671	0.030047	0.00010205	NaN	6.6304	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116830			52729	6321	30174	30175							0.08451731234026738
VLEDIAVFIG	10	Unmodified	_VLEDIAVFIG_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8189697265625	2	538.305332	1074.59611	0.12489	6.7229E-05	-2.3571	-0.0012689	-2.2322	-0.0012016	538.3040442734793	13.568	0.43841	13.501	13.162	13.6	-0.067496					19	15	2	0	0	0	0.32123	1	387	387		1.6526	0	1	117590			52730	8266	30175	30176	64547	64547					0.0617978041727838
VLEDRRPTL	9	Unmodified	_VLEDRRPTL_					0	0	0		ENST00000313807.4_1_15:44829006-44829054:-|nuORF	ENST00000313807.4_1_15:44829006-44829054:-|nuORF	ENST00000313807.4_1_15:44829006-44829054:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.8169555664062	2	549.81693	1097.61931	0.44046	0.00024217	-0.38418	-0.00021123	0.056272	3.0939E-05	549.8166788489984	21.403	0.65042	21.403	21.169	21.819	0					54	22	3	0	0	0	0.29638	1	2854	2854		9.3831	0	1	190390			52731	9336	30176	30177	64548	64548					0.07440219254635849
VLEDRRPTL	9	Unmodified	_VLEDRRPTL_					0	0	0		ENST00000313807.4_1_15:44829006-44829054:-|nuORF	ENST00000313807.4_1_15:44829006-44829054:-|nuORF	ENST00000313807.4_1_15:44829006-44829054:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.8168334960938	2	549.81693	1097.61931	0.5872	0.00032285	-0.45185	-0.00024844	0.13535	7.4416E-05	549.8166240039728	21.513	0.72929	21.412	21.188	21.917	-0.10034					55	25	3	0	0	0	0.19747	1	2861	2861		24.021	4.6586	1	237070			52732	9336	30176	30177	64549	64549					0.07440219254635849
VLEDRRPTL	9	Unmodified	_VLEDRRPTL_					0	0	0		ENST00000313807.4_1_15:44829006-44829054:-|nuORF	ENST00000313807.4_1_15:44829006-44829054:-|nuORF	ENST00000313807.4_1_15:44829006-44829054:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.816650390625	2	549.81693	1097.61931	0.4478	0.00024621	-0.38913	-0.00021395	0.058664	3.2254E-05	549.8166209878958	21.469	0.8307	21.42	21.207	22.038	-0.049377					55	29	3	0	0	0	0.23767	1	2855	2855		18.146	3.741	1	223820			52733	9336	30176	30177	64550	64550					0.07440219254635849
VLEDRRPTL	9	Unmodified	_VLEDRRPTL_					0	0	0		ENST00000313807.4_1_15:44829006-44829054:-|nuORF	ENST00000313807.4_1_15:44829006-44829054:-|nuORF	ENST00000313807.4_1_15:44829006-44829054:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	549.81693	1097.61931	0.5872	0.00032285	-0.45185	-0.00024844	0.13535	7.4416E-05	549.8166240039728	21.513	0.72929	21.412	21.188	21.917	-0.10034	0.00059513	-3.6935E-05	NaN	24.021	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237070			52734	9336	30176	30177							0.07440219254635849
VLEFNRKLS	9	Unmodified	_VLEFNRKLS_					0	0	0			REV__nc|ENSG00000120539|Q96GX5-2|MASTL	REV__nc|ENSG00000120539|Q96GX5-2|MASTL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3038940429688	2	553.321848	1104.62914	0.31259	0.00017296	0.475	0.00026283	0.78759	0.00043579	553.3220360017285	28.795	0.49401	28.791	28.599	29.093	-0.0042572					27	16	2	0	0	0	0.15219	1	5107	5107		30.637	0	1	362020	+		52735	15086	30177	30178	64551	64551					0.08101407260005544
VLEHQQWHK	9	Unmodified	_VLEHQQWHK_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8150024414062	2	602.814722	1203.61489	0.30469	0.00018367	0.25679	0.00015479	0.56148	0.00033847	602.8148273932817	16.044	0.94593	15.929	15.692	16.638	-0.11434					88	32	4	0	0	0	0.33508	1	1332	1332		3.5965	0	1	1176000			52736	525	30178	30179	64552	64552					0.021227548316801403
VLEKEKKLL	9	Unmodified	_VLEKEKKLL_					0	0	0		nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9	nc|ENSG00000127914|Q99996-3|AKAP9	nc|ENSG00000127914|Q99996-3|AKAP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2967529296875	2	550.357899	1098.70125	0.30673	0.00016881	1.0015	0.00055121	1.3083	0.00072002	550.358366651605	57.189	0.38042	57.17	57.033	57.414	-0.019077					17	13	2	0	0	0	0.25066	1	13759	13759		7.2892	1.5574	1	145560			52737	3339	30179	30180	64553	64553					0.15584321613710017
VLEKGGKVF	9	Unmodified	_VLEKGGKVF_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000413631.1_1_13:111590511-111591024:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2848815917969	2	488.794935	975.575317	0.49482	0.00024187	0.25182	0.00012309	0.74665	0.00036496	488.79496196200273	54.307	0.62888	54.291	54.002	54.631	-0.015923					45	21	3	0	0	0	0.25526	1	12821	12821		4.3292	0	1	961370			52738	4547	30180	30181	64554	64554					0.08655234828290759
VLEKLQAPVEI	11	Unmodified	_VLEKLQAPVEI_					0	0	0			REV__AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	REV__AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8690795898438	2	619.871371	1237.72819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.56	1	113.56	113.06	114.06	0								0	0	0	0.37501	1	29492	29492		2.7352	0	1		+		52739	13091	30181	30182	64555	64555					0.11883385434225602
VLEKLQAPVEI	11	Unmodified	_VLEKLQAPVEI_					0	0	0			REV__AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	REV__AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8692016601562	2	619.871371	1237.72819	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.71	1	105.71	105.21	106.21	-0.0027847								0	0	0	0.37501	1	27997	27997		2.7352	0	1		+		52740	13091	30181	30182	64556	64556					0.11883385434225602
VLEMGILWE	9	Unmodified	_VLEMGILWE_					0	0	0			REV__ENSG00000144476|ENST00000272928|ACKR3	REV__ENSG00000144476|ENST00000272928|ACKR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7927856445312	2	545.286085	1088.55762	0.34732	0.00018939	-1.0198	-0.00055608	-0.67248	-0.0003667	545.2854261043212	59.615	0.6922	59.71	59.355	60.047	0.095093					47	24	2	0	0	0	0.25066	1	14433	14433		11.64	0.81637	1	1741300	+		52741	16237	30182	30183	64557	64557					0.016881515111435874
VLENKNQQL	9	Unmodified	_VLENKNQQL_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3108520507812	2	543.301113	1084.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.015	1	74.984	74.484	75.484	-0.031487								0	0	0	0.23091	1	19238	19238		12.532	0.89125	1				52742	3371	30183	30184	64558	64558					0.04876226500641678
VLEPKDKLF	9	Unmodified	_VLEPKDKLF_					0	0	0			REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3006591796875	2	544.82115	1087.62775	0.6819	0.00037151	-0.48077	-0.00026193	0.20113	0.00010958	544.8207472350657	63.229	0.32004	63.325	63.096	63.416	0.095722					16	11	2	0	0	0	0.24739	1	15652	15652		4.756	0.42677	1	112070	+		52743	22455	30184	30185	64559	64559					0.08743773171227076
VLEPRVLL	8	Unmodified	_VLEPRVLL_					0	0	0		ENSG00000146904|ENST00000275815|EPHA1;ENST00000488068.5_1_7:143088552-143095662:-|nuORF	ENSG00000146904|ENST00000275815|EPHA1	ENSG00000146904|ENST00000275815|EPHA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.8053894042969	2	469.805303	937.596052	0.1449	6.8075E-05	0.4818	0.00022635	0.6267	0.00029443	469.80545248951427	68.801	0.7209	68.801	68.592	69.313	0					52	25	3	0	0	0	0.37937	1	17400	17400		21.747	0	1	698130			52744	4736	30185	30186	64560	64560					0.12475825207945945
VLFALKVLN	9	Unmodified	_VLFALKVLN_					0	0	0		ENSG00000144468|ENST00000392062|RHBDD1	ENSG00000144468|ENST00000392062|RHBDD1	ENSG00000144468|ENST00000392062|RHBDD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.30218505859375	2	508.828778	1015.643	0.46108	0.00023461	-1.177	-0.0005989	-0.71594	-0.00036429	508.82795115612475	49.452	0.60115	49.452	48.97	49.572	0					35	21	2	0	0	0	0.23783	1	11252	11252		12.532	0	1	158650			52745	4588	30186	30187	64561	64561					0.13580684759074302
VLFCSFSYDG	10	Unmodified	_VLFCSFSYDG_					0	0	0		ENST00000560379.1_1_15:50790733-50791282:+|nuORF	ENST00000560379.1_1_15:50790733-50791282:+|nuORF	ENST00000560379.1_1_15:50790733-50791282:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.8536376953125	2	569.2497	1136.48485	0.40128	0.00022843	-0.60801	-0.00034611	-0.20673	-0.00011768	569.7516898050238	92.802	0.32536	92.803	92.63	92.955	0.00046539					27	23	2	0	0	0	0.31847	1	24642	24642		6.7232	5.0705	1	178870			52746	11897	30187	30188	64562	64562					-0.07793602282299616
VLFEDMEK	8	Unmodified	_VLFEDMEK_					0	0	0		nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	nc|ENSG00000184634|Q93074-3|MED12	nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.27716064453125	2	505.746793	1009.47903	0.38868	0.00019658	0.26751	0.00013529	0.6562	0.00033187	505.7466847015379	52.822	0.4115	52.822	52.6	53.012	0					16	14	2	0	0	0	0.3366	1	12432	12432		12.532	0	1	126070			52747	7466	30188	30189	64563	64563					-0.02532700793983622
VLFEGILVF	9	Unmodified	_VLFEGILVF_					0	0	0		nc|ENSG00000130717|Q9HA47-2|UCK1;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1	nc|ENSG00000130717|Q9HA47-2|UCK1	nc|ENSG00000130717|Q9HA47-2|UCK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.8076782226562	2	518.807511	1035.60047	0.36992	0.00019192	-0.16268	-8.4402E-05	0.20724	0.00010752	518.8073792479563	91.767	1.0772	91.767	91.338	92.415	0					220	79	4	0	0	0	0.155	1	24439	24439		30.225	1.738	1	1583500			52748	3503	30189	30190	64564	64564					0.08409289630867534
VLFFDRNPI	9	Unmodified	_VLFFDRNPI_					0	0	0		nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	nc|ENSG00000125257|O15439-2|ABCC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3640747070312	2	560.811116	1119.60768	0.37953	0.00021285	-0.14787	-8.293E-05	0.23166	0.00012992	560.810897264145	40.91	0.4767	41.002	40.824	41.301	0.09267					30	17	2	0	0	0	0.25527	1	8723	8723		5.2969	1.3525	1	372040			52749	3195	30190	30191	64565	64565					0.05266022231262468
VLFFFFFFLHE	11	Unmodified	_VLFFFFFFLHE_					0	0	0			REV__ENST00000499247.2_1_17:48941386-48941458:-|nuORF	REV__ENST00000499247.2_1_17:48941386-48941458:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.78125	3	498.260308	1491.7591	0.29011	0.00014455	1.2886	0.00064206	1.5787	0.00078661	498.2608550372281	26.694	0.5452	26.694	26.296	26.841	0					24	18	2	0	0	0	0.33122	1	4350	4350		7.0371	6.5826	1	99460	+		52750	21702	30191	30192	64566	64566					0.032885835391425644
VLFFFFFFLHE	11	Unmodified	_VLFFFFFFLHE_					0	0	0			REV__ENST00000499247.2_1_17:48941386-48941458:-|nuORF	REV__ENST00000499247.2_1_17:48941386-48941458:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7812194824219	3	498.260308	1491.7591	0.29703	0.000148	0.75623	0.0003768	1.0533	0.0005248	498.26069386642826	26.48	0.61489	26.441	26.235	26.85	-0.038671					48	21	3	0	0	0	0.33122	1	4389	4389		7.0371	5.7074	1	77952	+		52751	21702	30191	30192	64567	64567					0.032885835391425644
VLFFVFPL	8	Unmodified	_VLFFVFPL_					0	0	0		Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|250|3|anti-sense	Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|250|3|anti-sense	Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|250|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2720642089844	2	491.29404	980.573526	0.70662	0.00034716	0.1199	5.8904E-05	0.82652	0.00040606	491.29403212408687	34.064	0.46777	34.064	33.78	34.247	0					28	16	2	0	0	0	0.31651	1	6660	6660		24.21	0	1	122320			52752	12390	30192	30193	64568	64568					0.08246225810319174
VLFFVFPL	8	Unmodified	_VLFFVFPL_					0	0	0		Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|250|3|anti-sense	Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|250|3|anti-sense	Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|250|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2720642089844	2	491.29404	980.573526	0.20088	9.8693E-05	1.3203	0.00064866	1.5212	0.00074735	491.29461491688386	33.909	0.49607	33.976	33.657	34.153	0.066704					25	17	2	0	0	0	0.31651	1	6612	6612		24.21	0	1	94253			52753	12390	30192	30193	64569	64569					0.08246225810319174
VLFFWRRGVTH	11	Unmodified	_VLFFWRRGVTH_					0	0	0		ENST00000483466.5_1_3:66023948-66024068:-|nuORF	ENST00000483466.5_1_3:66023948-66024068:-|nuORF	ENST00000483466.5_1_3:66023948-66024068:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7818298339844	3	473.266568	1416.77787	0.5555	0.0002629	-0.81616	-0.00038626	-0.26066	-0.00012336	473.2663192725916	48.503	0.40437	48.55	48.341	48.745	0.047523					33	14	3	0	0	0	0.32863	1	11077	11077		11.518	4.0408	1	362150			52754	11060	30193	30194	64570	64570					0.0861555795354434
VLFFWRRGVTH	11	Unmodified	_VLFFWRRGVTH_					0	0	0		ENST00000483466.5_1_3:66023948-66024068:-|nuORF	ENST00000483466.5_1_3:66023948-66024068:-|nuORF	ENST00000483466.5_1_3:66023948-66024068:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.781982421875	3	473.266568	1416.77787	0.43307	0.00020496	-1.2013	-0.00056855	-0.76826	-0.00036359	473.2661704857529	48.481	0.40009	48.524	48.243	48.643	0.043324					32	14	3	0	0	0	0.32863	1	11018	11018		2.8433	0	1	340350			52755	11060	30193	30194	64571	64571					0.0861555795354434
VLFGMSFLF	9	Unmodified	_VLFGMSFLF_					0	0	0			REV__ENSG00000142677|ENST00000270800|IL22RA1	REV__ENSG00000142677|ENST00000270800|IL22RA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7621459960938	2	530.780439	1059.54633	0.64696	0.00034339	-1.1576	-0.00061443	-0.51064	-0.00027104	530.7801830011496	87.899	1.3414	87.899	87.731	89.072	0					113	66	2	0	0	0	0.24311	1	23530	23530		16.942	2.3606	1	337460	+		52756	16133	30194	30195	64572	64572					0.01893374207634224
VLFHCLAK	8	Unmodified	_VLFHCLAK_					0	0	0		ENSG00000113048|ENST00000261413|MRPS27;nc|ENSG00000113048|Q92552-2|MRPS27;ENST00000522562.5_1_5:71523001-71533927:-|nuORF	ENSG00000113048|ENST00000261413|MRPS27	ENSG00000113048|ENST00000261413|MRPS27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2818298339844	2	465.765123	929.515694	-0.34029	-0.00015849	1.8751	0.00087335	1.5348	0.00071485	465.76592921761414	13.389	0.25707	13.389	13.2	13.457	0					11	8	2	0	0	0	0.34337	1	406	406		5.2307	0	1	23864			52757	2472	30195	30196	64573	64573					0.04811640613229429
VLFICWITF	9	Unmodified	_VLFICWITF_					0	0	0		chr2:169259217-169268127|138|10.35|0.1|6.72|-|2|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|58;chr11:103391535-103399663|312|10.06|0.06|7.28|+|1|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|31	chr2:169259217-169268127|138|10.35|0.1|6.72|-|2|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|58	chr2:169259217-169268127|138|10.35|0.1|6.72|-|2|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.3090209960938	2	571.309364	1140.60417	0.0012315	7.0356E-07	-0.42221	-0.00024121	-0.42098	-0.00024051	571.3089937456587	27.638	0.8841	27.638	27.237	28.121	0					86	30	4	0	0	0	0.193	2	4715	4715;4763		24.674	1.9376	1	748110			52758	123	30196	30197	64574;64575	64574					0.03949636133029344
VLFICWITF	9	Unmodified	_VLFICWITF_					0	0	0		chr2:169259217-169268127|138|10.35|0.1|6.72|-|2|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|58;chr11:103391535-103399663|312|10.06|0.06|7.28|+|1|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|31	chr2:169259217-169268127|138|10.35|0.1|6.72|-|2|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|58	chr2:169259217-169268127|138|10.35|0.1|6.72|-|2|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|58	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3091430664062	2	571.309364	1140.60417	-0.053733	-3.0698E-05	-0.40236	-0.00022987	-0.45609	-0.00026057	571.3090084572655	27.561	0.96424	27.55	27.239	28.203	-0.011562					71	33	3	0	0	0	0.193	2	4700	4700;4746		24.674	6.0355	1	738070			52759	123	30196	30197	64576;64577	64576					0.03949636133029344
VLFICWITF	9	Unmodified	_VLFICWITF_					0	0	0		chr2:169259217-169268127|138|10.35|0.1|6.72|-|2|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|58;chr11:103391535-103399663|312|10.06|0.06|7.28|+|1|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|31	chr2:169259217-169268127|138|10.35|0.1|6.72|-|2|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|58	chr2:169259217-169268127|138|10.35|0.1|6.72|-|2|TE_info:L1PA5,L1PA5_dup1361,L1,LINE,donor,+,169268127,169270755|LRP2,None|58	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	571.309364	1140.60417	0.0012315	7.0356E-07	-0.42221	-0.00024121	-0.42098	-0.00024051	571.3089937456587	27.638	0.8841	27.638	27.237	28.121	0	0.067394	9.6607E-05	NaN	24.674	86	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	748110			52760	123	30196	30197							0.03949636133029344
VLFMYRVYH	9	Unmodified	_VLFMYRVYH_					0	0	0			REV__nc|ENSG00000290838|A6NI72|NCF1B	REV__nc|ENSG00000290838|A6NI72|NCF1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2505798339844	3	409.882955	1226.62703	-0.35982	-0.00014748	-1.0861	-0.00044516	-1.4459	-0.00059265	409.8828237194668	14.66	0.3952	14.66	14.423	14.819	0					21	13	2	0	0	0	0.25843	1	779	779		5.7319	0	1	80983	+		52761	23254	30197	30198	64578	64578					0.02278655250529482
VLFMYRVYH	9	Unmodified	_VLFMYRVYH_					0	0	0			REV__nc|ENSG00000290838|A6NI72|NCF1B	REV__nc|ENSG00000290838|A6NI72|NCF1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.25067138671875	3	409.882955	1226.62703	-0.15398	-6.3113E-05	-3.2858	-0.0013468	-3.4397	-0.0014099	409.8828820415155	14.786	0.61042	14.679	14.513	15.123	-0.10725					28	21	2	0	0	0	0.25527	1	831	831		8.7454	2.115	1	71645	+		52762	23254	30197	30198	64579	64579					0.02278655250529482
VLFMYRVYH	9	Unmodified	_VLFMYRVYH_					0	0	0			REV__nc|ENSG00000290838|A6NI72|NCF1B	REV__nc|ENSG00000290838|A6NI72|NCF1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.250732421875	3	409.882955	1226.62703	-0.21885	-8.9703E-05	-3.6889	-0.001512	-3.9077	-0.0016017	410.2155145687942	14.838	0.49911	14.774	14.456	14.955	-0.064413					42	17	4	0	0	0	0.25843	1	829	829		5.7319	0.68433	1	80521	+		52763	23254	30197	30198	64580	64580					0.02278655250529482
VLFNVTVTM	9	Unmodified	_VLFNVTVTM_					0	0	0		ENSG00000105855|ENST00000222573|ITGB8;nc|ENSG00000105855|P26012-2|ITGB8	ENSG00000105855|ENST00000222573|ITGB8	ENSG00000105855|ENST00000222573|ITGB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.280517578125	2	512.280803	1022.54705	0.37538	0.0001923	-0.69827	-0.00035771	-0.32289	-0.00016541	512.280612545404	76.42	2.8719	76.389	75.525	78.397	-0.031487					153	105	3	0	0	0	0.27532	1	19766	19766		12.532	0	1	1498000			52764	2030	30198	30199	64581	64581					0.036681688566886805
VLFPAKFF	8	Unmodified	_VLFPAKFF_					0	0	0			REV__ENSG00000131969|ENST00000337334|ABHD12B	REV__ENSG00000131969|ENST00000337334|ABHD12B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.78814697265625	2	484.783839	967.553125	0.52356	0.00025381	3.3159	0.0016075	3.8395	0.0018613	484.7880193184683	36.025	0.92458	36.111	35.73	36.654	0.086246					131	32	6	0	0	0	0.43455	1	7258	7258		11.114	0.93107	1	3060400	+		52765	15543	30199	30200	64582	64582					0.06805055150505268
VLFQSDTF	8	Unmodified	_VLFQSDTF_					0	0	0			REV__nc|ENSG00000157593|Q8TB61-4|SLC35B2	REV__nc|ENSG00000157593|Q8TB61-4|SLC35B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.31298828125	2	478.739825	955.465098	0.27599	0.00013213	-0.68309	-0.00032702	-0.4071	-0.0001949	478.7394949773413	70.465	0.39258	70.526	70.351	70.744	0.060783					16	13	2	0	0	0	0.33293	1	17880	17880		20.454	0	1	118350	+		52766	23040	30200	30201	64583	64583					-0.014416102307677647
VLFRDLYPFK	10	Unmodified	_VLFRDLYPFK_					0	0	0		ENST00000242067.10_1_7:33423358-33423430:+|nuORF	ENST00000242067.10_1_7:33423358-33423430:+|nuORF	ENST00000242067.10_1_7:33423358-33423430:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.3690795898438	2	649.368798	1296.72304	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.64	1	112.64	112.14	113.14	0								0	0	0	0.38166	1	29270	29270		1.4819	0	1				52767	8887	30201	30202	64584	64584					0.0865512636225958
VLFSPLDKAF	10	Unmodified	_VLFSPLDKAF_					0	0	0			REV__ENSG00000109265|ENST00000682029|CRACD	REV__ENSG00000109265|ENST00000682029|CRACD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.83935546875	2	568.82115	1135.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.853	1	66.853	66.353	67.353	0								0	0	0	0.33354	1	16756	16756		21.747	1.293	1		+		52768	14635	30202	30203	64585	64585					0.06535773171231085
VLFSSFGDIM	10	Unmodified	_VLFSSFGDIM_					0	0	0		chrX:70610543-70613253|397|28.71|0.16|7.46|-|0|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|19	chrX:70610543-70613253|397|28.71|0.16|7.46|-|0|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|19	chrX:70610543-70613253|397|28.71|0.16|7.46|-|0|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3627319335938	2	558.275718	1114.53688	0.35131	0.00019613	0.47163	0.0002633	0.82294	0.00045943	558.2758468721717	71.493	0.53455	71.493	71.183	71.718	0					34	18	2	0	0	0	0.27772	1	18240	18240		14.838	10.894	1	544040			52769	179	30203	30204	64586	64586					-0.01580438868541023
VLFTGPLLP	9	Unmodified	_VLFTGPLLP_					0	0	0			REV__ENST00000541233.1_1_12:6554564-6560555:+|nuORF	REV__ENST00000541233.1_1_12:6554564-6560555:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.79400634765625	2	478.794404	955.574254	0.40197	0.00019246	-0.77481	-0.00037098	-0.37284	-0.00017851	478.7939964097282	83.054	0.61397	83.054	82.813	83.427	0					38	23	2	0	0	0	0.23783	1	21729	21729		18.135	0	1	171390	+		52770	22126	30204	30205	64587	64587					0.09469020459368949
VLFVLYGFL	9	Unmodified	_VLFVLYGFL_					0	0	0			REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8182373046875	2	535.817879	1069.6212	0.41492	0.00022232	0.76318	0.00040893	1.1781	0.00063125	535.8180808146851	88.91	0.72707	89	88.595	89.322	0.090561					72	31	3	0	0	0	0.32415	1	23445	23445		5.2307	2.9279	1	449650	+		52771	14681	30205	30206	64588	64588					0.08917880010494628
VLFVLYGFL	9	Unmodified	_VLFVLYGFL_					0	0	0			REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8179931640625	2	535.817879	1069.6212	0.55908	0.00029957	0.47357	0.00025375	1.0327	0.00055332	535.8179216469548	88.95	0.77422	88.949	88.64	89.415	-0.00080872					73	33	3	0	0	0	0.29662	2	23468	23468;23476		9.3474	4.1168	1	656270	+		52772	14681	30205	30206	64589;64590	64589					0.08917880010494628
VLFVTHQLQ	9	Unmodified	_VLFVTHQLQ_					0	0	0		ENST00000437205.5_1_3:183639090-183689734:-|nuORF;nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	ENST00000437205.5_1_3:183639090-183689734:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2883911132812	2	542.811116	1083.60768	0.54477	0.00029571	2.4967	0.0013552	3.0415	0.0016509	543.3135285153353	49.624	0.15706	49.624	49.572	49.729	0					6	5	2	0	0	0	0.24311	1	11431	11431		16.942	4.4107	1	168620			52773	2581	30206	30207	64591	64591					0.06922022231287883
VLFYLRIIA	9	Unmodified	_VLFYLRIIA_					0	0	0			REV__ENST00000549651.1_1_12:70636242-70636440:-|nuORF	REV__ENST00000549651.1_1_12:70636242-70636440:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3480834960938	2	554.349877	1106.6852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.24	1	12.172	11.672	12.672	-0.06806								0	0	0	0.26704	1	67	67		0.6015	0	1		+		52774	22199	30207	30208	64592	64592					0.13612660167450485
VLFYSLPLR	9	Unmodified	_VLFYSLPLR_					0	0	0			REV__ENSG00000165091|ENST00000297784|TMC1	REV__ENSG00000165091|ENST00000297784|TMC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3318481445312	2	554.331685	1106.64882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.18	1	114.16	113.66	114.66	-0.019096								0	0	0	0.26258	1	29661	29661		2.3027	0	1		+		52775	17206	30208	30209	64593	64593					0.09975783270738248
VLGAARLGSL	10	Unmodified	_VLGAARLGSL_					0	0	0			REV__ENST00000287652.8_1_3:10290056-10290500:+|nuORF	REV__ENST00000287652.8_1_3:10290056-10290500:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2351379394531	2	478.798009	955.581465	0.29454	0.00014103	-0.37663	-0.00018033	-0.082088	-3.9304E-05	478.79795668573104	31.965	0.70751	32.006	31.748	32.456	0.040991					35	24	2	0	0	0	0.31847	1	6146	6146		6.7232	0	1	158630	+		52776	19737	30209	30210	64594	64594					0.10189753059785289
VLGALGLRVL	10	Unmodified	_VLGALGLRVL_					0	0	0			REV__ENST00000391761.5_1_19:54598488-54598698:-|nuORF	REV__ENST00000391761.5_1_19:54598488-54598698:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.8034362792969	2	505.839677	1009.6648	0.47578	0.00024067	-0.31623	-0.00015996	0.15955	8.0707E-05	505.83945003862067	43.211	0.63331	43.288	43.05	43.684	0.077518					36	22	2	0	0	0	0.31165	1	9429	9429		15.847	3.3156	1	539790	+		52777	17605	30210	30211	64595	64595					0.16035489507646616
VLGEIPELRLL	11	Unmodified	_VLGEIPELRLL_					0	0	0			REV__ENST00000380262.7_1_17:7835877-7836009:+|nuORF	REV__ENST00000380262.7_1_17:7835877-7836009:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.3868408203125	2	626.387188	1250.75982	-0.032207	-2.0174E-05	2.115	0.0013248	2.0828	0.0013046	626.8890891225356	103.62	0.66187	103.62	103.51	104.17	0					151	92	2	0	0	0	0.46059	1	27543	27543		3.2813	0.54611	1	22132000	+		52778	20546	30211	30212	64596	64596					0.14447378188174298
VLGEIPELRLL	11	Unmodified	_VLGEIPELRLL_					0	0	0			REV__ENST00000380262.7_1_17:7835877-7836009:+|nuORF	REV__ENST00000380262.7_1_17:7835877-7836009:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.3878784179688	2	626.387188	1250.75982	0.12648	7.9226E-05	2.3248	0.0014562	2.4513	0.0015355	626.3895401431339	103.17	0.72874	103.17	102.89	103.62	-0.0011139					171	104	2	0	0	0	0.46059	1	27446	27446		3.2813	0.54611	1	23725000	+		52779	20546	30211	30212	64597	64597					0.14447378188174298
VLGEMGEAPA	10	Unmodified	_VLGEMGEAPA_					0	0	0		ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.8082580566406	2	487.236593	972.458632	0.22216	0.00010824	0.42816	0.00020861	0.65031	0.00031686	487.2365539387259	21.907	0.45339	21.907	21.68	22.133	0					20	16	2	0	0	0	0.318	1	2962	2962		7.2892	0.56607	1	81142			52780	2338	30212	30213	64598	64598					-0.028698714537881642
VLGERIVIV	9	Unmodified	_VLGERIVIV_					0	0	0		ENSG00000175946|ENST00000684634|KLHL38	ENSG00000175946|ENST00000684634|KLHL38	ENSG00000175946|ENST00000684634|KLHL38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.3238830566406	2	499.32386	996.633166	0.484	0.00024167	-0.19099	-9.5364E-05	0.29301	0.00014631	499.3237026529067	56.955	0.89288	56.955	56.66	57.552	0					81	32	4	0	0	0	0.09064	1	13728	13728		56.177	3.9087	1	2686800			52781	6894	30213	30214	64599	64599					0.1347149675370929
VLGERIVIV	9	Unmodified	_VLGERIVIV_					0	0	0		ENSG00000175946|ENST00000684634|KLHL38	ENSG00000175946|ENST00000684634|KLHL38	ENSG00000175946|ENST00000684634|KLHL38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.32391357421875	2	499.32386	996.633166	0.42244	0.00021093	0.022954	1.1462E-05	0.44539	0.00022239	499.3237568826936	56.853	0.77811	56.932	56.652	57.43	0.078674					72	28	4	0	0	0	0.09064	1	13692	13692		56.177	2.3442	1	2488500			52782	6894	30213	30214	64600	64600					0.1347149675370929
VLGLALALAF	10	Unmodified	_VLGLALALAF_					0	0	0		ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7769470214844	2	494.315503	986.616454	0.67268	0.00033252	-0.2605	-0.00012877	0.41218	0.00020375	494.31490571598965	60.5	0.44389	60.595	60.395	60.839	0.0951					27	15	3	0	0	0	0.28208	1	14816	14816		12.532	0	1	306260			52783	4294	30214	30215	64601	64601					0.12260995867734437
VLGLVHTTV	9	Unmodified	_VLGLVHTTV_					0	0	0			REV__ENST00000205636.3_1_3:32523409-32523487:-|nuORF	REV__ENST00000205636.3_1_3:32523409-32523487:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7869567871094	2	469.78711	937.559667	-0.12401	-5.8258E-05	0.0014073	6.6112E-07	-0.1226	-5.7597E-05	469.7870119682012	28.257	0.53201	28.258	27.992	28.524	0.0004673					39	18	3	0	0	0	0.12846	1	4931	4931		34.102	1.797	1	329960	+		52784	19401	30215	30216	64602	64602					0.0883894831121097
VLGPTPVQK	9	Unmodified	_VLGPTPVQK_					0	0	0		ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7869567871094	2	469.78711	937.559667	-0.26391	-0.00012398	0.40348	0.00018955	0.13958	6.5571E-05	469.7871860284422	28.282	0.5701	28.282	28.008	28.578	0					33	19	2	0	0	0	0.16853	1	4898	4898		38.176	15.027	1	402870			52785	6047	30216	30217	64603	64603					0.08838948311222339
VLGPTPVQK	9	Unmodified	_VLGPTPVQK_					0	0	0		ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.786865234375	2	469.78711	937.559667	-0.12185	-5.7244E-05	0.025066	1.1776E-05	-0.096785	-4.5469E-05	469.7870065528884	28.242	0.60541	28.238	27.994	28.599	-0.0042572					42	21	3	0	0	0	0.069366	2	4897	4897;4952		45.7	18.816	1	382300			52786	6047	30216	30217	64604;64605	64604					0.08838948311222339
VLGPTPVQK	9	Unmodified	_VLGPTPVQK_					0	0	0		ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7867736816406	2	469.78711	937.559667	-0.12401	-5.8258E-05	0.0014073	6.6112E-07	-0.1226	-5.7597E-05	469.7870119682012	28.257	0.53201	28.258	27.992	28.524	0.0004673					39	18	3	0	0	0	0.13748	1	4882	4882		32.786	4.2988	1	329960			52787	6047	30216	30217	64606	64606					0.08838948311222339
VLGQRGGE	8	Unmodified	_VLGQRGGE_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.9009704589844	2	408.222134	814.429715	-0.086786	-3.5428E-05	1.7203	0.00070227	1.6335	0.00066684	408.2232454963249	17.78	0.086235	17.719	17.65	17.736	-0.060429					4	2	2	0	0	0	0.3439	1	1728	1728		2.8892	0	1	13854	+		52788	18580	30217	30218	64607	64607					0.015077720321073684
VLGREHHF	8	Unmodified	_VLGREHHF_					0	0	0			REV__nc|ENSG00000186716|P11274-2|BCR	REV__nc|ENSG00000186716|P11274-2|BCR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.316162109375	2	497.764501	993.514448	0.15669	7.7995E-05	-2.2364	-0.0011132	-2.0797	-0.0010352	497.76332642947983	60.329	0.15913	60.329	60.228	60.387	0					9	5	2	0	0	0	0.32778	1	14754	14754		20.871	10.688	1	69994	+		52789	18463	30218	30219	64608	64608					0.01743142568705025
VLGRLQWRRE	10	Unmodified	_VLGRLQWRRE_					0	0	0			REV__ENST00000391759.5_2_19:54618770-54618941:-|nuORF	REV__ENST00000391759.5_2_19:54618770-54618941:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.2573547363281	3	438.258072	1311.75239	0.11791	5.1675E-05	-1.4332	-0.00062813	-1.3153	-0.00057646	438.2574190640615	23.647	0.42922	23.608	23.391	23.82	-0.038927					33	14	4	0	0	0	0.37007	1	3522	3522		8.9762	1.4992	1	118700	+		52790	20584	30219	30220	64609	64609					0.10898083431106897
VLGRLQWRRE	10	Unmodified	_VLGRLQWRRE_					0	0	0			REV__ENST00000391759.5_2_19:54618770-54618941:-|nuORF	REV__ENST00000391759.5_2_19:54618770-54618941:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	438.258072	1311.75239	-0.13214	-5.791E-05	-1.3137	-0.00057572	-1.4458	-0.00063363	438.2575376244256	23.541	0.40672	23.541	23.362	23.769	0	-0.039633	1.8728E-05	NaN	8.9762	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103850	+		52791	20584	30219	30220							0.10898083431106897
VLGRLQWRRE	10	Unmodified	_VLGRLQWRRE_					0	0	0			REV__ENST00000391759.5_2_19:54618770-54618941:-|nuORF	REV__ENST00000391759.5_2_19:54618770-54618941:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	438.258072	1311.75239	-0.056604	-2.4807E-05	-1.2708	-0.00055694	-1.3274	-0.00058175	438.25762504099686	23.666	0.38861	23.594	23.368	23.756	-0.072559	0.012879	7.5052E-05	NaN	8.9762	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94745	+		52792	20584	30219	30220							0.10898083431106897
VLGRLQWRRE	10	Unmodified	_VLGRLQWRRE_					0	0	0			REV__ENST00000391759.5_2_19:54618770-54618941:-|nuORF	REV__ENST00000391759.5_2_19:54618770-54618941:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	438.258072	1311.75239	0.11791	5.1675E-05	-1.4332	-0.00062813	-1.3153	-0.00057646	438.2574190640615	23.647	0.42922	23.608	23.391	23.82	-0.038927	0.026754	-0.00013852	NaN	8.9762	33	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118700	+		52793	20584	30219	30220							0.10898083431106897
VLGRRPGP	8	Unmodified	_VLGRRPGP_					0	0	0		ENST00000393640.8_1_16:70433284-70433377:-|nuORF	ENST00000393640.8_1_16:70433284-70433377:-|nuORF	ENST00000393640.8_1_16:70433284-70433377:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.26434326171875	2	426.264136	850.51372	0.024888	1.0609E-05	0.83416	0.00035557	0.85905	0.00036618	426.26457688021105	17.118	1.2323	17.058	16.56	17.792	-0.060429					110	43	4	0	0	0	0.42446	1	1513	1513		14.582	0	1	645480			52794	10056	30220	30221	64610	64610					0.08248347919663956
VLGRSPLTI	9	Unmodified	_VLGRSPLTI_					0	0	0		ENST00000536241.1_1_12:6958209-6958627:-|nuORF;ENSG00000111665|ENST00000538862|CDCA3	ENST00000536241.1_1_12:6958209-6958627:-|nuORF	ENST00000536241.1_1_12:6958209-6958627:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.331298828125	2	478.300384	954.586216	0.37356	0.00017868	0.3622	0.00017324	0.73577	0.00035192	478.3005803052949	53.709	0.23732	53.709	53.568	53.806	0					12	8	2	0	0	0	0.24471	1	12725	12725		17.113	0	1	162340			52795	2377	30221	30222	64611	64611					0.10710637202555517
VLGTRQNTI	9	Unmodified	_VLGTRQNTI_					0	0	0			REV__ENST00000380667.6_1_9:16583064-16870672:-|nuORF	REV__ENST00000380667.6_1_9:16583064-16870672:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2905578613281	2	501.290548	1000.56654	0.47606	0.00023864	-0.1711	-8.5773E-05	0.30495	0.00015287	501.29037309872626	88.783	1.7372	88.783	88.119	89.856	0					149	96	4	0	0	0	0.33018	1	23479	23479		4.3292	0	1	489040	+		52796	20550	30222	30223	64612	64612					0.06628261191792717
VLGTRQNTI	9	Unmodified	_VLGTRQNTI_					0	0	0			REV__ENST00000380667.6_1_9:16583064-16870672:-|nuORF	REV__ENST00000380667.6_1_9:16583064-16870672:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3027648925781	2	501.290548	1000.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.29	1	100.29	99.789	100.79	0								0	0	0	0.2489	1	26805	26805		6.7232	0	1		+		52797	20550	30222	30223	64613	64613					0.06628261191792717
VLGTRQNTI	9	Unmodified	_VLGTRQNTI_					0	0	0			REV__ENST00000380667.6_1_9:16583064-16870672:-|nuORF	REV__ENST00000380667.6_1_9:16583064-16870672:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2904968261719	2	501.290548	1000.56654	0.41719	0.00020913	-0.20319	-0.00010186	0.214	0.00010727	501.2903398118738	88.66	1.7529	88.749	87.832	89.585	0.089203					134	86	3	0	0	0	0.33018	1	23444	23444		4.3292	0	1	407800	+		52798	20550	30222	30223	64614	64614					0.06628261191792717
VLGTRQNTI	9	Unmodified	_VLGTRQNTI_					0	0	0			REV__ENST00000380667.6_1_9:16583064-16870672:-|nuORF	REV__ENST00000380667.6_1_9:16583064-16870672:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.290771484375	2	501.290548	1000.56654	0.42116	0.00021113	-0.15709	-7.8747E-05	0.26408	0.00013238	501.2904101407893	88.806	0.95444	88.805	88.447	89.401	-0.0013123					94	42	3	0	0	0	0.28674	1	23421	23421		10.824	0	1	464560	+		52799	20550	30222	30223	64615	64615					0.06628261191792717
VLGWEKQPVLL	11	Unmodified	_VLGWEKQPVLL_					0	0	0			REV__MER52A_dup623|chr7:125467694-125468854:-|4.819275525858485|0.0188931890662395|7.99|518.0|21|3|sense	REV__MER52A_dup623|chr7:125467694-125468854:-|4.819275525858485|0.0188931890662395|7.99|518.0|21|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.6111145019531	3	427.923696	1280.74926	-0.33998	-0.00014549	0.56979	0.00024383	0.22981	9.8341E-05	427.9237530583493	46.016	0.58052	46.076	45.844	46.424	0.059834					48	20	3	0	0	0	0.32477	1	10386	10386		6.2344	0	1	1770600	+		52800	22861	30223	30224	64616	64616					0.12011395533750147
VLGWRGVL	8	Unmodified	_VLGWRGVL_					0	0	0		ENST00000541477.5_1_12:7032337-7032421:+|nuORF	ENST00000541477.5_1_12:7032337-7032421:+|nuORF	ENST00000541477.5_1_12:7032337-7032421:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2665710449219	2	450.276712	898.538872	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.245	1	42.33	41.83	42.83	0.085197								0	0	0	0.35779	1	9177	9177		11.114	0	1				52801	11731	30224	30225	64617	64617					0.08554402722222676
VLHEETTIP	9	Unmodified	_VLHEETTIP_					0	0	0		ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2848510742188	2	519.776939	1037.53933	0.20138	0.00010467	-0.65585	-0.0003409	-0.45447	-0.00023622	519.77659190999	23.407	0.29459	23.319	23.191	23.486	-0.087608					16	10	2	0	0	0	0.25526	1	3426	3426		7.9102	0	1	39624			52802	8414	30225	30226	64618	64618					0.022057328607616
VLHEETTIP	9	Unmodified	_VLHEETTIP_					0	0	0		ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF	ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	519.776939	1037.53933	0.3352	0.00017423	-1.1035	-0.00057355	-0.76826	-0.00039932	519.7765055539146	23.391	0.27375	23.346	23.197	23.47	-0.044867	0.013458	-0.0002809	NaN	7.9102	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32172			52803	8414	30225	30226							0.022057328607616
VLHRSLVPP	9	Unmodified	_VLHRSLVPP_					0	0	0			REV__nc|ENSG00000138614|Q96SY0-4|INTS14	REV__nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3139343261719	2	509.313826	1016.6131	-0.048457	-2.468E-05	0.074494	3.7941E-05	0.026037	1.3261E-05	509.3137606849461	14.756	0.36334	14.69	14.455	14.818	-0.065873					22	12	2	0	0	0	0.33018	1	843	843		4.3292	0	1	58767	+		52804	15935	30226	30227	64619	64619					0.10545745813749363
VLHRSLVPP	9	Unmodified	_VLHRSLVPP_					0	0	0			REV__nc|ENSG00000138614|Q96SY0-4|INTS14	REV__nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	509.313826	1016.6131	0.015056	7.6681E-06	0.30875	0.00015725	0.32381	0.00016492	509.313882448757	14.588	0.53798	14.588	14.307	14.845	0	-0.036884	6.6759E-05	NaN	4.3292	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47331	+		52805	15935	30226	30227							0.10545745813749363
VLHRSLVPP	9	Unmodified	_VLHRSLVPP_					0	0	0			REV__nc|ENSG00000138614|Q96SY0-4|INTS14	REV__nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	509.313826	1016.6131	-0.048457	-2.468E-05	0.074494	3.7941E-05	0.026037	1.3261E-05	509.3137606849461	14.756	0.36334	14.69	14.455	14.818	-0.065873	0.064764	-0.00017186	NaN	4.3292	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58767	+		52806	15935	30226	30227							0.10545745813749363
VLHSWAVPTL	10	Unmodified	_VLHSWAVPTL_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2852783203125	2	561.818941	1121.62333	0.62608	0.00035174	-2.041	-0.0011466	-1.4149	-0.0007949	561.8177955826884	54.415	0.61685	54.478	54.246	54.863	0.063202					39	22	2	0	0	0	0.31165	1	12861	12861		15.847	4.3525	1	607410			52807	8105	30227	30228	64620	64620					0.06738308748322197
VLHTTRKSQVF	11	Unmodified	_VLHTTRKSQVF_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.564453125	3	439.254216	1314.74082	0.096714	4.2482E-05	1.2582	0.00055266	1.3549	0.00059514	439.2546903970016	35.756	0.17006	35.843	35.698	35.869	0.08625					8	5	2	0	0	0	0.33287	1	7153	7153		2.8433	2.435	1	72080			52808	307	30228	30229	64621	64621					0.09603841617104081
VLHWRILS	8	Unmodified	_VLHWRILS_					0	0	0		ENST00000519349.5_1_5:159844177-159846060:-|nuORF	ENST00000519349.5_1_5:159844177-159846060:-|nuORF	ENST00000519349.5_1_5:159844177-159846060:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.78143310546875	2	512.308544	1022.60253	-0.035573	-1.8224E-05	-3.6367	-0.0018631	-3.6723	-0.0018813	512.3063069649867	81.534	0.14301	81.603	81.507	81.65	0.068993					13	6	3	0	0	0	0.34319	1	21227	21227		5.7604	0	1	39262			52809	11456	30229	30230	64622	64622					0.09213763159323207
VLICGSFHM	9	Unmodified	_VLICGSFHM_					0	0	0			REV__ENST00000459636.5_1_2:75185926-75188259:+|nuORF	REV__ENST00000459636.5_1_2:75185926-75188259:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.80047607421875	2	503.746073	1005.47759	0.12011	6.0504E-05	-1.4482	-0.00072951	-1.3281	-0.000669	503.746070676712	51.973	0.16287	51.972	51.819	51.982	-0.00080872					6	5	2	0	0	0	0.24542	1	12162	12162		14.582	3.4672	1	61600	+		52810	21191	30230	30231	64623	64623					-0.024926133637336534
VLIFLESNTI	10	Unmodified	_VLIFLESNTI_					0	0	0			REV__ENST00000576693.1_1_17:7506199-7507356:-|nuORF	REV__ENST00000576693.1_1_17:7506199-7507356:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.7254028320312	2	574.831714	1147.64888	0.3354	0.0001928	-1.0271	-0.00059044	-0.69175	-0.00039764	575.3313605337636	49.546	0.26653	49.546	49.408	49.675	0					14	9	2	0	0	0	0.31515	1	11422	11422		12.241	0	1	214340	+		52811	22453	30231	30232	64624	64624					0.0809573848009677
VLIKADNTIE	10	Unmodified	_VLIKADNTIE_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2959594726562	2	558.318971	1114.62339	0.32121	0.00017934	1.2676	0.00070775	1.5889	0.00088709	558.3198223974271	35.762	0.57243	35.848	35.568	36.14	0.08625					38	20	3	0	0	0	0.31515	1	7206	7206		8.1555	0	1	151900			52812	2120	30232	30233	64625	64625					0.0706626395767671
VLIKNRFF	8	Unmodified	_VLIKNRFF_					0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.3396606445312	2	518.818744	1035.62294	0.65701	0.00034087	0.44736	0.0002321	1.1044	0.00057297	518.8188343537913	78.922	0.59774	78.891	78.48	79.078	-0.030426					52	24	3	0	0	0	0.34147	1	20315	20315		6.3541	0	1	299730	+		52813	14478	30233	30234	64626	64626					0.10654933819137113
VLILFEQFNV	10	Unmodified	_VLILFEQFNV_					0	0	0			REV__ENSG00000143546|ENST00000368733|S100A8	REV__ENSG00000143546|ENST00000368733|S100A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.9009704589844	3	407.90078	1220.68051	-0.14304	-5.8346E-05	0.45335	0.00018492	0.31031	0.00012657	407.9009491592052	17.836	0.98609	17.775	17.384	18.37	-0.060429					84	34	3	0	0	0	0.40854	1	1728	1728		1.9064	0.57673	1	119700	+		52814	16187	30234	30235	64627	64627					0.07899731234033425
VLILPLDKR	9	Unmodified	_VLILPLDKR_					0	0	0		ENSG00000149609|ENST00000375222|C20orf144	ENSG00000149609|ENST00000375222|C20orf144	ENSG00000149609|ENST00000375222|C20orf144	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7880249023438	2	533.852784	1065.69102	0.69804	0.00037265	-0.61067	-0.00032601	0.087366	4.664E-05	533.8522866333523	50.047	0.69901	50.092	49.877	50.576	0.044891					39	25	2	0	0	0	0.24848	1	11555	11555		5.7319	4.6604	1	449860			52815	4883	30235	30236	64628	64628					0.1607975867912046
VLINRELF	8	Unmodified	_VLINRELF_					0	0	0			REV__ENSG00000182890|ENST00000328078|GLUD2	REV__ENSG00000182890|ENST00000328078|GLUD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.282470703125	2	502.300384	1002.58622	0.78276	0.00039318	-0.70624	-0.00035474	0.076521	3.8437E-05	502.2999692102198	50.679	0.68745	50.724	50.403	51.09	0.044891					52	24	3	0	0	0	0.3225	1	11829	11829		10.183	0	1	781180	+		52816	18225	30236	30237	64629	64629					0.08502637202570895
VLIRGELTP	9	Unmodified	_VLIRGELTP_					0	0	0			REV__ENSG00000126787|ENST00000247191|DLGAP5	REV__ENSG00000126787|ENST00000247191|DLGAP5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.32391357421875	2	499.305667	996.596781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.898	1	56.976	56.476	57.476	0.078674								0	0	0	0.18374	1	13692	13692		26.884	1.4843	1		+		52817	15323	30237	30238	64630	64630					0.09834619856997051
VLITPSLREKT	11	Unmodified	_VLITPSLREKT_					0	0	0		nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|O94854-4|MACF1	nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|O94854|MACF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.3826904296875	2	628.88227	1255.74999	0.29001	0.00018238	-0.46486	-0.00029235	-0.17485	-0.00010996	629.3831830116468	92.517	1.1368	92.517	92.175	93.311	0					111	91	2	0	0	0	0.47546	1	24829	24829		1.3295	1.3295	1	418770			52818	12691	30238	30239	64631	64631					0.13234190182788552
VLITPSLREKT	11	Unmodified	_VLITPSLREKT_					0	0	0		nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|O94854-4|MACF1	nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|O94854|MACF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	628.88227	1255.74999	0.29001	0.00018238	-0.46486	-0.00029235	-0.17485	-0.00010996	629.3831830116468	92.517	1.1368	92.517	92.175	93.311	0	0	0	NaN	1.3295	111	91	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	418770			52819	12691	30238	30239							0.13234190182788552
VLIYFCLPF	9	Unmodified	_VLIYFCLPF_					0	0	0		ENST00000372067.7_1_6:43738145-43738190:+|nuORF	ENST00000372067.7_1_6:43738145-43738190:+|nuORF	ENST00000372067.7_1_6:43738145-43738190:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.803955078125	2	557.803914	1113.59328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.294	1	87.288	86.788	87.788	-0.0056229								0	0	0	0.24077	1	22995	22995		9.3474	0	1				52820	9833	30239	30240	64632	64632					0.04102233758771945
VLIYFCLPF	9	Unmodified	_VLIYFCLPF_					0	0	0		ENST00000372067.7_1_6:43738145-43738190:+|nuORF	ENST00000372067.7_1_6:43738145-43738190:+|nuORF	ENST00000372067.7_1_6:43738145-43738190:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.8047485351562	2	557.803914	1113.59328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.345	1	87.34	86.84	87.84	-0.0056229								0	0	0	0.24077	1	23011	23011		9.3474	0	1				52821	9833	30239	30240	64633	64633					0.04102233758771945
VLKCPALL	8	Unmodified	_VLKCPALL_					0	0	0		ENSG00000120832|ENST00000240050|MTERF2	ENSG00000120832|ENST00000240050|MTERF2	ENSG00000120832|ENST00000240050|MTERF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.7786560058594	2	428.769874	855.525196	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.671	1	78.671	78.171	79.171	0								0	0	0	0.35779	1	20365	20365		11.114	0	1				52822	2967	30240	30241	64634	64634					0.0916540889877524
VLKELLQKRQQ	11	Unmodified	_VLKELLQKRQQ_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;REV3L|p.N1558Kfs*2|1|0.35|ENSG00000009413|chr6:111373681-111373682|-/T|frameshift_variant	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.2873229980469	3	461.620788	1381.84053	0.27691	0.00012783	0.034202	1.5789E-05	0.31112	0.00014362	461.62065356366134	44.442	0.78782	44.517	44.174	44.962	0.075047					75	28	4	0	0	0	0.33326	1	9972	9972		1.4551	0	1	859750			52823	407	30241	30242	64635	64635					0.16488659231072234
VLKKFICI	8	Unmodified	_VLKKFICI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000576585.1_1_17:1556769-1557303:-|nuORF;ENST00000575116.1_1_17:1555319-1557183:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.3065185546875	2	482.306624	962.598695	0.44235	0.00021335	-0.38638	-0.00018635	0.055963	2.6991E-05	482.3062199315492	78.802	0.83315	78.86	78.499	79.332	0.058151					79	35	3	0	0	0	0.46461	1	20341	20341		0.79363	0.79363	1	304140			52824	6781	30242	30243	64636	64636					0.11589957341243462
VLKKFICI	8	Unmodified	_VLKKFICI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8;ENST00000576585.1_1_17:1556769-1557303:-|nuORF;ENST00000575116.1_1_17:1555319-1557183:-|nuORF	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.3064880371094	2	482.306624	962.598695	0.60014	0.00028945	-0.57977	-0.00027963	0.020372	9.8253E-06	482.30621771897387	78.827	0.93697	78.796	78.48	79.417	-0.030434					86	38	3	0	0	0	0.34434	1	20389	20389		0.79363	0	1	391520			52825	6781	30242	30243	64637	64637					0.11589957341243462
VLKKIKKKKK	10	Unmodified	_VLKKIKKKKK_					0	0	0		RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant;ENSG00000081019|ENST00000261441|RSBN1;nc|ENSG00000081019|Q5VWQ0-4|RSBN1	RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant	RSBN1|p.N713Mfs*14|1|0.06|ENSG00000081019|chr1:113766251-113766252|-/GATATGTACATATTCAAACACA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.9612426757812	2	620.9632	1239.91185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.011	1	82.011	81.511	82.511	0								0	0	0	0.38209	1	21389	21389		0	0	1				52826	1174	30243	30244	64638	64638					0.30148823726381124
VLKKKINGWVI	11	Unmodified	_VLKKKINGWVI_					0	0	0			REV__ENSG00000129534|ENST00000310806|MIS18BP1	REV__ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.7763977050781	3	433.283336	1296.82818	-0.14815	-6.4191E-05	0.087841	3.806E-05	-0.060309	-2.6131E-05	433.2832761347315	43.794	0.68665	43.794	43.519	44.206	0					55	24	4	0	0	0	0.33094	1	9615	9615		7.4771	1.6936	1	591720	+		52827	15420	30244	30245	64639	64639					0.1916366755870058
VLKLIGTL	8	Unmodified	_VLKLIGTL_					0	0	0		nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.T4618Pfs*43|1|0.02|ENSG00000198838|chr15:33854439-33854440|-/TCCAGGTGCAG|frameshift_variant;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3	nc|ENSG00000198838|Q15413-3|RYR3	nc|ENSG00000198838|Q15413-3|RYR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.2506103515625	2	428.796946	855.57934	0.41912	0.00017972	-0.57233	-0.00024541	-0.15321	-6.5696E-05	428.7966553006094	50.686	0.29659	50.731	50.549	50.846	0.044888					13	10	2	0	0	0	0.33993	1	11723	11723		11.64	0	1	85786			52828	8139	30245	30246	64640	64640					0.14577324321987817
VLKLKSKQ	8	Unmodified	_VLKLKSKQ_					0	0	0		ENST00000603538.1_1_8:64080466-64080652:-|nuORF	ENST00000603538.1_1_8:64080466-64080652:-|nuORF	ENST00000603538.1_1_8:64080466-64080652:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2701416015625	2	472.318577	942.622602	-0.1588	-7.5003E-05	-1.2131	-0.00057296	-1.3719	-0.00064797	472.3178902403967	13.449	0.1653	13.381	13.302	13.468	-0.067496					7	5	2	0	0	0	0.34319	1	419	419		5.7604	0.52976	1	14341			52829	12274	30246	30247	64641	64641					0.14899514099272437
VLKMEYAEV	9	Unmodified	_VLKMEYAEV_					0	0	0		ENSG00000100949|ENST00000216840|RABGGTA;ENST00000559551.5_1_14:24734823-24737113:-|nuORF;ENST00000558649.5_1_14:24735828-24737454:-|nuORF	ENSG00000100949|ENST00000216840|RABGGTA	ENSG00000100949|ENST00000216840|RABGGTA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.282958984375	2	541.283543	1080.55253	0.68573	0.00037117	-0.39353	-0.00021301	0.29219	0.00015816	541.2831491569715	73.023	0.73621	72.994	72.767	73.503	-0.029305					52	26	3	0	0	0	0.10197	1	18672	18672		37.974	0	1	459570			52830	1649	30247	30248	64642	64642					0.015478476484986459
VLKRCHQFS	9	Unmodified	_VLKRCHQFS_					0	0	0			REV__ENSG00000171017|ENST00000306708|LRRC8E	REV__ENSG00000171017|ENST00000306708|LRRC8E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.7646484375	2	559.300393	1116.58623	0.36139	0.00020213	2.6045	0.0014567	2.9659	0.0016588	559.3016433293315	30.463	0.42437	30.463	30.194	30.619	0					26	14	2	0	0	0	0.25202	1	5553	5553		10.824	10.824	1	98646	+		52831	17615	30248	30249	64643	64643					0.03260313930900338
VLKSLRAA	8	Unmodified	_VLKSLRAA_					0	0	0		ENSG00000141664|ENST00000269499|ZCCHC2	ENSG00000141664|ENST00000269499|ZCCHC2	ENSG00000141664|ENST00000269499|ZCCHC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.75567626953125	2	429.281995	856.549437	-0.40147	-0.00017234	-1.8308	-0.00078595	-2.2323	-0.00095829	429.2820416303507	13.257	0.23373	13.158	13.042	13.276	-0.099291					15	7	3	0	0	0	0.344	1	350	350		2.5775	0	1	38656			52832	4403	30249	30250	64644	64644					0.1154238537665151
VLKSLRAA	8	Unmodified	_VLKSLRAA_					0	0	0		ENSG00000141664|ENST00000269499|ZCCHC2	ENSG00000141664|ENST00000269499|ZCCHC2	ENSG00000141664|ENST00000269499|ZCCHC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	429.281995	856.549437	-0.41347	-0.00017749	0.13051	5.6027E-05	-0.28295	-0.00012147	429.28190803464764	13.204	0.25107	13.204	13.058	13.309	0	0.030707	-4.6385E-05	NaN	2.5775	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25701			52833	4403	30249	30250							0.1154238537665151
VLKSLRAA	8	Unmodified	_VLKSLRAA_					0	0	0		ENSG00000141664|ENST00000269499|ZCCHC2	ENSG00000141664|ENST00000269499|ZCCHC2	ENSG00000141664|ENST00000269499|ZCCHC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	429.281995	856.549437	-0.4533	-0.00019459	0.24189	0.00010384	-0.21141	-9.0755E-05	429.28214987379516	13.226	0.25561	13.159	13.073	13.329	-0.067496	-0.014902	4.9238E-05	NaN	2.5775	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24680			52834	4403	30249	30250							0.1154238537665151
VLKTALVL	8	Unmodified	_VLKTALVL_					0	0	0		ENSG00000124449|ENST00000244314|IRGC	ENSG00000124449|ENST00000244314|IRGC	ENSG00000124449|ENST00000244314|IRGC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.2505187988281	2	428.796946	855.57934	0.39534	0.00016952	-0.22149	-9.4972E-05	0.17386	7.455E-05	428.7967198631628	50.751	0.32766	50.751	50.518	50.846	0					16	11	2	0	0	0	0.34131	1	11737	11737		7.9102	0	1	92250			52835	3158	30250	30251	64645	64645					0.14577324321987817
VLKYTYVF	8	Unmodified	_VLKYTYVF_					0	0	0			REV__ENST00000562722.1_1_16:70597761-70599451:+|nuORF	REV__ENST00000562722.1_1_16:70597761-70599451:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.3601684570312	2	516.791861	1031.56917	0.30346	0.00015683	-3.0129	-0.001557	-2.7094	-0.0014002	517.2899925443104	75.728	0.43412	75.697	75.47	75.904	-0.031487					24	15	3	0	0	0	0.33245	1	19424	19424		19.439	2.3524	1	104210	+		52836	18597	30251	30252	64646	64646					0.05464716596748076
VLLCFLFL	8	Unmodified	_VLLCFLFL_					0	0	0		ENST00000220531.7_1_15:45900671-45900797:+|nuORF	ENST00000220531.7_1_15:45900671-45900797:+|nuORF	ENST00000220531.7_1_15:45900671-45900797:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.6683044433594	2	484.2879	966.561247	-0.75091	-0.00036366	-3.5718	-0.0017298	-4.3227	-0.0020935	484.287056072532	35.079	0.46972	35.157	34.92	35.39	0.077377					35	16	3	0	0	0	0.33618	1	6994	6994		17.087	0	1	214590			52837	8832	30252	30253	64647	64647					0.07662866075622787
VLLDSRASF	9	Unmodified	_VLLDSRASF_					0	0	0			REV__ENST00000601655.5_2_19:39924352-39926579:-|nuORF	REV__ENST00000601655.5_2_19:39924352-39926579:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.8004455566406	2	504.279649	1006.54475	0.27041	0.00013636	0.61104	0.00030813	0.88145	0.0004445	504.27984681590004	52.053	0.50959	52.053	51.729	52.239	0					31	18	2	0	0	0	0.24311	1	12141	12141		16.942	4.7016	1	539190	+		52838	22634	30253	30254	64648	64648					0.04173456443231771
VLLDSRASF	9	Unmodified	_VLLDSRASF_					0	0	0			REV__ENST00000601655.5_2_19:39924352-39926579:-|nuORF	REV__ENST00000601655.5_2_19:39924352-39926579:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	504.279649	1006.54475	0.34022	0.00017157	0.35069	0.00017684	0.69091	0.00034841	504.2797908870325	51.99	0.41374	52.04	51.788	52.202	0.050575	-0.047551	-9.5198E-05	NaN	16.942	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	529610	+		52839	22634	30253	30254							0.04173456443231771
VLLDSRSS	8	Unmodified	_VLLDSRSS_					0	0	0		ENST00000372406.5_1_9:132897411-132897591:+|nuORF	ENST00000372406.5_1_9:132897411-132897591:+|nuORF	ENST00000372406.5_1_9:132897411-132897591:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.2305908203125	2	438.742899	875.471246	0.047962	2.1043E-05	2.1172	0.00092889	2.1651	0.00094993	438.74389208678593	81.82	0.36103	81.82	81.558	81.919	0					17	14	2	0	0	0	0.44569	1	21327	21327		7.2892	2.0586	1	55493			52840	9840	30254	30255	64649	64649					0.02852908000761545
VLLEPFIH	8	Unmodified	_VLLEPFIH_					0	0	0		ENSG00000176095|ENST00000321599|IP6K1	ENSG00000176095|ENST00000321599|IP6K1	ENSG00000176095|ENST00000321599|IP6K1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.64697265625	2	484.284203	966.553853	0.081441	3.944E-05	-0.49595	-0.00024018	-0.41451	-0.00020074	484.2831176384382	42.698	0.29305	42.789	42.663	42.956	0.091362					17	10	2	0	0	0	0.344	1	9353	9353		2.5775	0	1	232390			52841	6902	30255	30256	64650	64650					0.06923849799557047
VLLGAYGFT	9	Unmodified	_VLLGAYGFT_					0	0	0		nc|ENSG00000144130|Q86YG4|NT5DC4;ENSG00000144130|ENST00000688554|NT5DC4	nc|ENSG00000144130|Q86YG4|NT5DC4	nc|ENSG00000144130|Q86YG4|NT5DC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.2591247558594	2	470.760561	939.506569	0.076376	3.5955E-05	-2.6055	-0.0012266	-2.5291	-0.0011906	470.7607054666034	76.055	1.0189	76.108	75.27	76.289	0.053413					46	36	2	0	0	0	0.23775	1	19537	19537		18.135	0	1	154290			52842	4567	30256	30257	64651	64651					0.03439570528564673
VLLGWLLVI	9	Unmodified	_VLLGWLLVI_					0	0	0		ENSG00000120451|ENST00000265909|SNX19;nc|ENSG00000120451|Q92543-2|SNX19	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2689819335938	2	513.341521	1024.66849	0.40355	0.00020716	0.066212	3.3989E-05	0.46976	0.00024115	513.3414018546531	72.304	0.37954	72.304	72.076	72.456	0					20	13	2	0	0	0	0.22431	1	18427	18427		20.871	3.9289	1	133780			52843	2944	30257	30258	64652	64652					0.15714159281515094
VLLIRAQTL	9	Unmodified	_VLLIRAQTL_					0	0	0		ENST00000552801.6_1_12:112370518-112374599:-|nuORF;nc|ENSG00000198270|Q8NCL8|TMEM116;nc|ENSG00000198270|Q8NCL8-3|TMEM116;ENSG00000198270|ENST00000552374|TMEM116	ENST00000552801.6_1_12:112370518-112374599:-|nuORF	ENST00000552801.6_1_12:112370518-112374599:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7445068359375	2	513.837134	1025.65972	0.4773	0.00024526	-0.92964	-0.00047768	-0.45234	-0.00023243	513.836821376246	40.307	0.30842	40.307	40.193	40.501	0					13	10	2	0	0	0	0.2451	1	8615	8615		15.847	5.0233	1	57934			52844	8058	30258	30259	64653	64653					0.14791185645026417
VLLLSSLFPVW	11	Unmodified	_VLLLSSLFPVW_					0	0	0		ENST00000509662.5_1_3:130613258-130613580:+|nuORF;ENST00000328560.12_2_3:130613343-130613580:+|nuORF	ENST00000509662.5_1_3:130613258-130613580:+|nuORF	ENST00000509662.5_1_3:130613258-130613580:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.3807983398438	2	637.381374	1272.7482	0.42653	0.00027186	0.061529	3.9218E-05	0.48806	0.00031108	637.3812386909785	73.206	0.81672	73.26	72.98	73.797	0.053833					83	29	4	0	0	0	0.41896	1	18817	18817		8.7454	0	1	1474300			52845	9432	30259	30260	64654	64654					0.12273181164846392
VLLMYLHKF	9	Unmodified	_VLLMYLHKF_					0	0	0			REV__ENSG00000178074|ENST00000319974|C2orf69	REV__ENSG00000178074|ENST00000319974|C2orf69	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.335693359375	2	582.335913	1162.65727	0.052867	3.0786E-05	0.45736	0.00026634	0.51023	0.00029712	582.3359266012166	15.562	0.42083	15.498	15.216	15.636	-0.064414					27	13	3	0	0	0	0.35563	1	1080	1080		0.52476	0	1	75800	+		52846	18014	30260	30261	64655	64655					0.08245013915711752
VLLNDTSV	8	Unmodified	_VLLNDTSV_					0	0	0			REV__ENSG00000083093|ENST00000261584|PALB2	REV__ENSG00000083093|ENST00000261584|PALB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.27349853515625	2	430.739825	859.465098	-0.018798	-8.0972E-06	-2.505	-0.001079	-2.5238	-0.0010871	430.7398629070814	57.91	0.43376	57.995	57.788	58.222	0.085617					21	15	2	0	0	0	0.34247	1	13948	13948		8.5933	0	1	223650	+		52847	13928	30261	30262	64656	64656					0.02974389769235586
VLLPFSGAGL	10	Unmodified	_VLLPFSGAGL_					0	0	0		ENST00000427606.2_1_8:146219922-146220138:-|nuORF	ENST00000427606.2_1_8:146219922-146220138:-|nuORF	ENST00000427606.2_1_8:146219922-146220138:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2420959472656	2	487.289485	972.564418	-0.095383	-4.6479E-05	-3.6806	-0.0017935	-3.776	-0.00184	487.2876263841376	13.956	0.22842	13.851	13.763	13.991	-0.10466					12	7	2	0	0	0	0.31889	1	574	574		6.2058	0	1	56818			52848	10436	30262	30263	64657	64657					0.07703832454001258
VLLPNIRMF	9	Unmodified	_VLLPNIRMF_					0	0	0			REV__ENST00000368433.5_1_1:154962752-154963160:+|nuORF	REV__ENST00000368433.5_1_1:154962752-154963160:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.290283203125	2	551.825712	1101.63687	0.65755	0.00036285	-2.5334	-0.001398	-1.8759	-0.0010352	552.3268462541811	78.766	0.10644	78.766	78.669	78.776	0					5	3	2	0	0	0	0.25811	1	20390	20390		5.2307	0	1	39787	+		52849	20340	30263	30264	64658	64658					0.09011843255916574
VLLPPIIF	8	Unmodified	_VLLPPIIF_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.78521728515625	2	456.301865	910.589176	0.11433	5.2168E-05	-1.8022	-0.00082235	-1.6879	-0.00077018	456.30092048717233	38.105	0.59282	38.105	37.895	38.488	0					33	20	2	0	0	0	0.34297	1	7995	7995		6.3541	0	1	148940			52850	7251	30264	30265	64659	64659					0.1303051232737289
VLLPPIIF	8	Unmodified	_VLLPPIIF_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	456.301865	910.589176	0.10868	4.959E-05	-1.5933	-0.00072703	-1.4846	-0.00067744	456.30103952322617	37.988	0.72158	38.085	37.796	38.517	0.097527	-0.0035089	0.00021308	NaN	6.3541	39	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156010			52851	7251	30264	30265							0.1303051232737289
VLLPPPAL	8	Unmodified	_VLLPPPAL_					0	0	0		ENST00000464428.2_1_1:177898995-177929556:-|nuORF;ENST00000466953.6_1_1:177898995-177928232:-|nuORF;ENSG00000120341|ENST00000308284|SEC16B	ENST00000464428.2_1_1:177898995-177929556:-|nuORF	ENST00000464428.2_1_1:177898995-177929556:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2703857421875	2	410.270564	818.526576	0.11913	4.8875E-05	-0.077794	-3.1917E-05	0.041334	1.6958E-05	410.2704333935178	77.132	1.4761	77.132	76.693	78.169	0					146	54	4	0	0	0	0.41716	1	20059	20059		17.087	0	1	5879800			52852	2941	30265	30266	64660	64660					0.11005366259178118
VLLQHKAAF	9	Unmodified	_VLLQHKAAF_					0	0	0		ENST00000609309.2_3_7:99955774-99964972:+|nuORF;ENST00000452089.5_3_7:99950875-99964972:+|nuORF	ENST00000609309.2_3_7:99955774-99964972:+|nuORF	ENST00000609309.2_3_7:99955774-99964972:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2744750976562	2	513.808377	1025.6022	0.5451	0.00028008	-0.0078726	-4.045E-06	0.53722	0.00027603	513.8081419961723	54.695	0.64298	54.758	54.434	55.077	0.063206					30	23	2	0	0	0	0.24739	1	12914	12914		13.508	0	1	221690			52853	12323	30266	30267	64661	64661					0.0904234343945518
VLLQKIKT	8	Unmodified	_VLLQKIKT_					0	0	0			REV__GCC2|p.V1325Sfs*7|1|0.29|ENSG00000135968|chr2:108487741-108487741|G/-|frameshift_variant	REV__GCC2|p.V1325Sfs*7|1|0.29|ENSG00000135968|chr2:108487741-108487741|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.8211669921875	2	471.820953	941.627353	0.17855	8.4241E-05	-0.099162	-4.6787E-05	0.079383	3.7455E-05	471.8208080397958	24.577	0.46863	24.504	24.234	24.702	-0.072559					26	15	2	0	0	0	0.39068	1	3797	3797		20.454	0.039092	1	108160	+		52854	15775	30267	30268	64662	64662					0.15420398242054034
VLLQWKKK	8	Unmodified	_VLLQWKKK_					0	0	0		ENSG00000163833|ENST00000338040|FBXO40	ENSG00000163833|ENST00000338040|FBXO40	ENSG00000163833|ENST00000338040|FBXO40	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.6576538085938	2	521.84222	1041.66989	0.57248	0.00029875	-0.56665	-0.0002957	0.0058298	3.0422E-06	521.8424034482485	49.578	0.44186	49.578	49.321	49.763	0					33	15	3	0	0	0	0.31934	1	11384	11384		18.135	8.7875	1	361620			52855	5743	30268	30269	64663	64663					0.15071793370270825
VLLQWKKK	8	Unmodified	_VLLQWKKK_					0	0	0		ENSG00000163833|ENST00000338040|FBXO40	ENSG00000163833|ENST00000338040|FBXO40	ENSG00000163833|ENST00000338040|FBXO40	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.6574096679688	2	521.84222	1041.66989	0.36632	0.00019116	-0.16783	-8.7581E-05	0.19849	0.00010358	521.8424917169009	49.558	0.48251	49.602	49.368	49.85	0.044891					26	17	2	0	0	0	0.34046	1	11477	11477		14.582	4.3983	1	448880			52856	5743	30268	30269	64664	64664					0.15071793370270825
VLLQWKKK	8	Unmodified	_VLLQWKKK_					0	0	0		ENSG00000163833|ENST00000338040|FBXO40	ENSG00000163833|ENST00000338040|FBXO40	ENSG00000163833|ENST00000338040|FBXO40	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.6573486328125	2	521.84222	1041.66989	0.3181	0.000166	-0.1614	-8.4223E-05	0.1567	8.1775E-05	521.8424222337438	49.538	0.43117	49.57	49.356	49.787	0.032043					33	15	3	0	0	0	0.34046	1	11466	11466		14.582	4.3983	1	340970			52857	5743	30268	30269	64665	64665					0.15071793370270825
VLLRDAVFE	9	Unmodified	_VLLRDAVFE_					0	0	0			REV__nc|ENSG00000048392|Q7LG56-3|RRM2B	REV__nc|ENSG00000048392|Q7LG56-3|RRM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.321533203125	2	531.303124	1060.5917	0.4187	0.00022246	0.010509	5.5833E-06	0.42921	0.00022804	531.3031468559002	69.252	0.52599	69.252	68.872	69.398	0					25	18	2	0	0	0	0.24581	1	17423	17423		16.942	4.4107	1	126540	+		52858	13548	30269	30270	64666	64666					0.06382315994369492
VLLRDAVFE	9	Unmodified	_VLLRDAVFE_					0	0	0			REV__nc|ENSG00000048392|Q7LG56-3|RRM2B	REV__nc|ENSG00000048392|Q7LG56-3|RRM2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3214721679688	2	531.303124	1060.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.943	1	69.014	68.514	69.514	0.071938								0	0	0	0.21726	1	17392	17392		16.942	2.3606	1		+		52859	13548	30269	30270	64667	64667					0.06382315994369492
VLLSIRHLMEL	11	Unmodified	_VLLSIRHLMEL_					0	0	0		nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7879333496094	3	441.932086	1322.77443	-0.38228	-0.00016894	2.1372	0.00094452	1.755	0.00077558	441.933122590077	34.478	0.36297	34.556	34.417	34.78	0.077377					18	12	2	0	0	0	0.33236	1	6798	6798		2.4348	0	1	97702			52860	6831	30270	30271	64668	64668					0.1259512706467376
VLLSPKKVM	9	Unmodified	_VLLSPKKVM_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-11|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7631530761719	2	507.822638	1013.63072	0.35294	0.00017923	1.6589	0.00084242	2.0118	0.0010217	507.8233855014963	62.817	0.30539	62.913	62.736	63.042	0.095726					17	10	2	0	0	0	0.25417	1	15482	15482		8.5933	0	1	392980			52861	4054	30271	30272	64669	64669					0.1244532502439597
VLLTDLLLS	9	Unmodified	_VLLTDLLLS_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2257080078125	2	493.810251	985.605948	0.43305	0.00021385	0.44918	0.00022181	0.88224	0.00043566	493.8105347295536	42.223	0.82308	42.308	41.983	42.806	0.085201					79	29	4	0	0	0	0.24739	1	9090	9090		4.756	0	1	1300400			52862	7211	30272	30273	64670	64670					0.11256968422685532
VLLVLMPPMF	10	Unmodified	_VLLVLMPPMF_					0	0	0		ENSG00000176555|ENST00000319988|OR4S1	ENSG00000176555|ENST00000319988|OR4S1	ENSG00000176555|ENST00000319988|OR4S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3335571289062	2	580.334524	1158.6545	0.22296	0.00012939	0.043363	2.5165E-05	0.26632	0.00015456	580.3342690903834	62.094	2.2532	62.191	61.429	63.683	0.096985					133	81	2	0	0	0	0.35073	1	15133	15133		12.532	1.7076	1	352690			52863	6935	30273	30274	64671	64671					0.08151422466562508
VLLVSLVWNTL	11	Unmodified	_VLLVSLVWNTL_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|401|3|anti-sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|401|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2835693359375	3	419.591946	1255.75401	0.30928	0.00012977	-0.49113	-0.00020607	-0.18185	-7.6302E-05	419.5917603625655	83.599	0.216	83.582	83.427	83.643	-0.016823					13	8	2	0	0	0	0.3322	1	21816	21816		4.7159	0.30977	1	86249	+		52864	22755	30274	30275	64672	64672					0.1363627967652974
VLLVSLVWNTL	11	Unmodified	_VLLVSLVWNTL_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|401|3|anti-sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|401|3|anti-sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	419.591946	1255.75401	0.22618	9.4902E-05	-0.14013	-5.8799E-05	0.086042	3.6103E-05	419.5917639162912	83.822	0.12053	83.822	83.738	83.859	0	0.11994	0.00037231	NaN	4.7159	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76876	+		52865	22755	30274	30275							0.1363627967652974
VLLWGTPMEV	10	Unmodified	_VLLWGTPMEV_					0	0	0			REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2618408203125	2	572.807185	1143.59982	0.49057	0.000281	-0.62962	-0.00036065	-0.13905	-7.9648E-05	572.8066511016343	49.988	0.79544	50.009	49.67	50.465	0.020691					48	29	2	0	0	0	0.29519	1	11571	11571		21.747	0	1	538640	+		52866	19440	30275	30276	64673	64673					0.033761269194883425
VLLWGTPMEV	10	Unmodified	_VLLWGTPMEV_					0	0	0			REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	572.807185	1143.59982	0.23675	0.00013561	-0.46807	-0.00026811	-0.23132	-0.0001325	572.8066186176591	49.923	0.70459	49.923	49.729	50.433	0	-0.043867	0.00021375	NaN	21.747	52	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	676960	+		52867	19440	30275	30276							0.033761269194883425
VLLWGTPMEV	10	Unmodified	_VLLWGTPMEV_					0	0	0			REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	572.807185	1143.59982	0.57421	0.00032891	-0.73507	-0.00042105	-0.16086	-9.2143E-05	572.8065525692401	49.925	0.73801	49.969	49.695	50.433	0.044891	0.0024189	-9.2132E-05	NaN	21.747	56	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535450	+		52868	19440	30275	30276							0.033761269194883425
VLLWSEVK	8	Unmodified	_VLLWSEVK_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7791442871094	2	487.289485	972.564418	0.38118	0.00018575	2.6447	0.0012887	3.0259	0.0014745	487.2908051716907	36.628	0.67832	36.715	36.626	37.305	0.08741					30	24	2	0	0	0	0.34185	1	7630	7630		5.7604	0	1	190900			52869	2328	30276	30277	64674	64674					0.07703832454001258
VLMAQKEGKR	10	Unmodified	_VLMAQKEGKR_					0	0	0		ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3359375	2	580.334433	1158.65431	0.33619	0.00019511	0.42314	0.00024556	0.75933	0.00044067	580.3353494843508	58.668	2.7207	58.668	58.216	60.936	0					295	96	6	0	0	0	0.18562	1	14256	14256		34.402	3.7652	1	57301000			52870	6499	30277	30278	64675	64675					0.08133138790913108
VLMAQKEGKR	10	Unmodified	_VLMAQKEGKR_					0	0	0		ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3348999023438	2	580.334433	1158.65431	0.34253	0.00019878	0.42151	0.00024462	0.76405	0.0004434	580.3353113866086	58.497	2.9197	58.589	58.168	61.088	0.091301					309	104	6	0	0	0	0.15473	1	14318	14318		38.176	5.8701	1	53172000			52871	6499	30277	30278	64676	64676					0.08133138790913108
VLMAQKEGKR	10	Unmodified	_VLMAQKEGKR_					0	0	0		ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3357543945312	2	580.334433	1158.65431	0.48551	0.00028176	0.23356	0.00013555	0.71908	0.0004173	580.3352388400133	58.691	2.7441	58.676	58.169	60.913	-0.014267					295	98	6	0	0	0	0.18562	1	14267	14267		34.402	3.7652	1	61730000			52872	6499	30277	30278	64677	64677					0.08133138790913108
VLMEVTLEGK	10	Oxidation (M)	_VLM(Oxidation (M))EVTLEGK_		VLM(1)EVTLEGK		VLM(140)EVTLEGK	0	0	1		ENST00000511209.5_1_5:56526760-56526990:+|nuORF	ENST00000511209.5_1_5:56526760-56526990:+|nuORF	ENST00000511209.5_1_5:56526760-56526990:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8076782226562	2	567.807382	1133.60021	0.25176	0.00014295	0.26629	0.0001512	0.51805	0.00029415	567.8074104477503	40.148	1.0383	40.148	39.595	40.634	0					103	37	5	0	0	0	3.3863E-05	1	8508	8508		135.86	74.262	1	1191100			52873	11383	30278	30279	64678	64678		953			0.03875501848665408
VLMEVTLEGK	10	Oxidation (M)	_VLM(Oxidation (M))EVTLEGK_		VLM(1)EVTLEGK		VLM(120)EVTLEGK	0	0	1		ENST00000511209.5_1_5:56526760-56526990:+|nuORF	ENST00000511209.5_1_5:56526760-56526990:+|nuORF	ENST00000511209.5_1_5:56526760-56526990:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.8074951171875	2	567.807382	1133.60021	0.5767	0.00032746	0.062665	3.5582E-05	0.63937	0.00036304	567.8072624017983	40.008	1.0895	40.1	39.548	40.637	0.09267					104	38	5	0	0	0	0.00069047	1	8467	8467		124.95	63.351	1	1349700			52874	11383	30278	30279	64679	64679		953			0.03875501848665408
VLMEVTLEGK	10	Oxidation (M)	_VLM(Oxidation (M))EVTLEGK_		VLM(1)EVTLEGK		VLM(120)EVTLEGK	0	0	1		ENST00000511209.5_1_5:56526760-56526990:+|nuORF	ENST00000511209.5_1_5:56526760-56526990:+|nuORF	ENST00000511209.5_1_5:56526760-56526990:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.807861328125	2	567.807382	1133.60021	0.33085	0.00018786	0.18496	0.00010502	0.51582	0.00029288	567.8074267364448	40	0.80448	40.099	39.788	40.592	0.099407					102	28	5	0	0	0	0.00069047	2	8435	8435;8497		124.95	63.351	1	1135000			52875	11383	30278	30279	64680;64681	64680		953			0.03875501848665408
VLMFRNKQ	8	Unmodified	_VLMFRNKQ_					0	0	0			REV__ENST00000396821.7_1_22:38879728-38879824:-|nuORF	REV__ENST00000396821.7_1_22:38879728-38879824:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.77880859375	2	518.292037	1034.56952	0.71772	0.00037199	-2.1263	-0.001102	-1.4085	-0.00073003	518.29127655317	37.545	0.39873	37.545	37.397	37.795	0					20	13	2	0	0	0	0.39956	1	7767	7767		19.439	3.5918	1	136290	+		52876	20657	30279	30280	64682	64682					0.05361813044964947
VLMFRNKQ	8	Unmodified	_VLMFRNKQ_					0	0	0			REV__ENST00000396821.7_1_22:38879728-38879824:-|nuORF	REV__ENST00000396821.7_1_22:38879728-38879824:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7787475585938	2	518.292037	1034.56952	0.314	0.00016275	-1.2469	-0.00064623	-0.93285	-0.00048349	518.2915775040016	37.477	0.46013	37.57	37.331	37.791	0.093014					23	16	2	0	0	0	0.33916	1	7718	7718		26.341	3.1929	1	214340	+		52877	20657	30279	30280	64683	64683					0.05361813044964947
VLMFRNKQ	8	Unmodified	_VLMFRNKQ_					0	0	0			REV__ENST00000396821.7_1_22:38879728-38879824:-|nuORF	REV__ENST00000396821.7_1_22:38879728-38879824:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	518.292037	1034.56952	0.71772	0.00037199	-2.1263	-0.001102	-1.4085	-0.00073003	518.29127655317	37.545	0.39873	37.545	37.397	37.795	0	-0.012315	-0.00059391	NaN	26.341	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136290	+		52878	20657	30279	30280							0.05361813044964947
VLMFRNKQ	8	Unmodified	_VLMFRNKQ_					0	0	0			REV__ENST00000396821.7_1_22:38879728-38879824:-|nuORF	REV__ENST00000396821.7_1_22:38879728-38879824:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	518.292037	1034.56952	0.314	0.00016275	-1.2469	-0.00064623	-0.93285	-0.00048349	518.2915775040016	37.477	0.46013	37.57	37.331	37.791	0.093014	0.012315	0.00031766	NaN	26.341	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214340	+		52879	20657	30279	30280							0.05361813044964947
VLMKLFIK	8	Unmodified	_VLMKLFIK_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.95892333984375	2	496.322274	990.629995	0.32613	0.00016186	-1.177	-0.00058419	-0.85091	-0.00042232	496.3213300754189	92.76	0.59257	92.76	92.451	93.044	0					79	46	2	0	0	0	0.34445	1	24607	24607		0	0	1	161120			52880	2868	30280	30281	64684	64684					0.13430530375330818
VLMREKEALK	10	Unmodified	_VLMREKEALK_					0	0	0		ENSG00000181562|ENST00000326842|EDDM3A	ENSG00000181562|ENST00000326842|EDDM3A	ENSG00000181562|ENST00000326842|EDDM3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.8887634277344	3	406.240919	1215.70093	-0.25789	-0.00010477	1.244	0.00050537	0.98612	0.0004006	406.2415777340592	18.37	0.29304	18.252	18.065	18.358	-0.11739					10	9	2	0	0	0	0.31629	1	1881	1881		5.7834	1.3773	1	28726			52881	7241	30281	30282	64685	64685					0.10170578622182802
VLMTSGLPLL	10	Unmodified	_VLMTSGLPLL_					0	0	0			REV__ENST00000408041.5_1_2:27430337-27430433:-|nuORF	REV__ENST00000408041.5_1_2:27430337-27430433:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.3287963867188	2	522.312103	1042.60965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.827	1	88.917	88.417	89.417	0.089874								0	0	0	0.36787	1	23473	23473		7.2892	0	1		+		52882	20748	30282	30283	64686	64686					0.0900531492486607
VLMVQWLK	8	Unmodified	_VLMVQWLK_					0	0	0		WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant;ENSG00000163811|ENST00000407426|WDR43	WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant	WDR43|p.A657Gfs*4|1|0.01|ENSG00000163811|chr2:28946714-28946715|-/GGAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.301025390625	2	508.801706	1015.58886	0.2121	0.00010792	2.9478	0.0014998	3.1599	0.0016077	508.8033489679125	33.256	0.52691	33.256	32.985	33.512	0					27	18	2	0	0	0	0.33245	1	6383	6383		13.508	1.8676	1	116520			52883	5736	30283	30284	64687	64687					0.08168769335861725
VLNADAIVV	9	Unmodified	_VLNADAIVV_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2637634277344	2	457.271293	912.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.737	1	69.737	69.237	70.237	0								0	0	0	0.19534	1	17638	17638		24.021	1.2843	1				52884	7937	30284	30285	64688	64688					0.06826955557278325
VLNAINRRKQ	10	Unmodified	_VLNAINRRKQ_					0	0	0		ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	ENSG00000175311|ENST00000311620|ANKS4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.369873046875	2	606.370195	1210.72584	0.06017	3.6485E-05	0.023995	1.455E-05	0.084165	5.1035E-05	606.3697970680852	119.42	0.069336	119.42	119.36	119.43	0					14	8	2	0	0	0	0.32174	1	30806	30806		0	0	1	21034			52885	6857	30285	30286	64689	64689					0.12890394539795125
VLNCQVLIT	9	Unmodified	_VLNCQVLIT_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7690124511719	2	501.786253	1001.55795	0.52092	0.00026139	-0.90178	-0.0004525	-0.38087	-0.00019111	501.7856416006007	85.332	0.91138	85.413	85.047	85.958	0.080887					54	34	2	0	0	0	0.22188	1	22501	22501		20.454	3.5113	1	197210			52886	7232	30286	30287	64690	64690					0.05723571230964808
VLNCQVLIT	9	Unmodified	_VLNCQVLIT_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.7684326171875	2	501.786253	1001.55795	0.54577	0.00027386	-0.97755	-0.00049052	-0.43178	-0.00021666	501.785757525441	85.394	0.82018	85.381	84.998	85.818	-0.01284					60	30	3	0	0	0	0.20651	1	22488	22488		26.884	3.7352	1	170650			52887	7232	30286	30287	64691	64691					0.05723571230964808
VLNCQVLIT	9	Unmodified	_VLNCQVLIT_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	501.786253	1001.55795	0.55352	0.00027775	-0.9469	-0.00047514	-0.39338	-0.00019739	501.78571915961277	85.428	0.85212	85.428	84.994	85.846	0	0.020415	-7.4884E-06	NaN	26.884	66	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134220			52888	7232	30286	30287							0.05723571230964808
VLNEYNQVM	9	Unmodified	_VLNEYNQVM_					0	0	0			REV__ZNF181|p.S362Ffs*51|1|0.07|ENSG00000197841|chr19:34741464-34741465|-/TT|frameshift_variant	REV__ZNF181|p.S362Ffs*51|1|0.07|ENSG00000197841|chr19:34741464-34741465|-/TT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2694091796875	2	555.268424	1108.5223	0.34628	0.00019228	0.97404	0.00054085	1.3203	0.00073313	555.2687229284417	71.139	1.1939	71.139	70.605	71.799	0					127	42	4	0	0	0	0.26879	2	18045	18045;18106		13.508	0.97634	1	2545100	+		52889	23358	30287	30288	64692;64693	64692					-0.027625110166809463
VLNEYNQVM	9	Unmodified	_VLNEYNQVM_					0	0	0			REV__ZNF181|p.S362Ffs*51|1|0.07|ENSG00000197841|chr19:34741464-34741465|-/TT|frameshift_variant	REV__ZNF181|p.S362Ffs*51|1|0.07|ENSG00000197841|chr19:34741464-34741465|-/TT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.26904296875	2	555.268424	1108.5223	0.34729	0.00019284	0.8892	0.00049375	1.2365	0.00068659	555.268635067978	71.157	1.075	71.132	70.666	71.741	-0.024864					120	38	5	0	0	0	0.26879	1	18066	18066		13.508	0.97634	1	2413800	+		52890	23358	30287	30288	64694	64694					-0.027625110166809463
VLNFKLKKK	9	Unmodified	_VLNFKLKKK_					0	0	0		ENSG00000214046|ENST00000487416|SMIM7;ENST00000461364.1_1_19:16764844-16770945:-|nuORF	ENSG00000214046|ENST00000487416|SMIM7	ENSG00000214046|ENST00000487416|SMIM7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.8030395507812	2	559.376426	1116.7383	0.31287	0.00017501	-0.090574	-5.0665E-05	0.22229	0.00012434	559.3764361866713	37.409	0.37443	37.502	37.275	37.65	0.093018					25	13	2	0	0	0	0.25526	1	7712	7712		7.9102	1.187	1	250740			52891	8375	30288	30289	64695	64695					0.18460037950126207
VLNLNSVSV	9	Unmodified	_VLNLNSVSV_					0	0	0			REV__ENSG00000182606|ENST00000327628|TRAK1	REV__ENSG00000182606|ENST00000327628|TRAK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7740173339844	2	472.7742	943.533846	0.22053	0.00010426	0.17065	8.068E-05	0.39118	0.00018494	472.77415750538586	32.821	0.85014	32.876	32.553	33.403	0.054375					54	30	3	0	0	0	0.17277	1	6336	6336		27.629	2.2295	1	478210	+		52892	18204	30289	30290	64696	64696					0.05982054068954312
VLNQLEEL	8	Unmodified	_VLNQLEEL_					0	0	0		ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENST00000481999.1_1_17:7813558-7814900:+|nuORF;ENST00000470531.5_3_17:7807732-7814900:+|nuORF	ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.27728271484375	2	479.266207	956.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.371	1	73.341	72.841	73.841	-0.029305								0	0	0	0.34492	1	18735	18735		16.942	0	1				52893	6414;2718	30290	30291	64697	64697					0.03786347832055981
VLNQNTLR	8	Unmodified	_VLNQNTLR_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000529186.1_1_11:44129577-44137613:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.277587890625	2	479.277441	956.540328	0.1868	8.9531E-05	0.095213	4.5634E-05	0.28202	0.00013516	479.27736151521805	74.127	3.7807	74.127	72.586	76.367	0					370	134	4	0	0	0	0.44389	2	19259	19259;19300		7.9102	1.7044	1	4891400			52894	4955	30291	30292	64698;64699	64698					0.060319920203255606
VLNRALDR	8	Unmodified	_VLNRALDR_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.78570556640625	2	478.785433	955.556313	0.47805	0.00022888	-0.67987	-0.00032551	-0.20181	-9.6626E-05	478.7851089278384	84.426	0.87066	84.503	84.123	84.994	0.077095					57	34	2	0	0	0	0.45942	1	22092	22092		2.5775	0	1	336890			52895	2464	30292	30293	64700	64700					0.0767569825721921
VLNRALDR	8	Unmodified	_VLNRALDR_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7854919433594	2	478.785433	955.556313	0.32123	0.0001538	-0.043618	-2.0884E-05	0.27761	0.00013291	478.78538045672474	82.087	1.6557	82.063	81.583	83.239	-0.024048					149	66	4	0	0	0	0.43302	1	21584	21584		11.64	0	1	5519000			52896	2464	30292	30293	64701	64701					0.0767569825721921
VLNRGPQLA	9	Unmodified	_VLNRGPQLA_					0	0	0			REV__ENSG00000165140|ENST00000375326|FBP1	REV__ENSG00000165140|ENST00000375326|FBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.66790771484375	2	484.287808	966.561064	-0.71386	-0.00034571	-3.2123	-0.0015557	-3.9262	-0.0019014	484.28706467460455	35.082	0.41433	35.158	34.963	35.377	0.075306					27	14	3	0	0	0	0.2322	1	6980	6980		20.454	3.3671	1	188230	+		52897	17209	30293	30294	64702	64702					0.07644582399996125
VLNSLLKVYF	10	Unmodified	_VLNSLLKVYF_					0	0	0		ENSG00000162460|ENST00000375782|TMEM82	ENSG00000162460|ENST00000375782|TMEM82	ENSG00000162460|ENST00000375782|TMEM82	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.3582763671875	2	598.357899	1194.70125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.298	1	98.359	97.859	98.859	0.061516								0	0	0	0.3726	1	26309	26309		5.2969	0.39987	1				52898	5574	30294	30295	64703	64703					0.11168321613718035
VLNSLLKVYF	10	Unmodified	_VLNSLLKVYF_					0	0	0		ENSG00000162460|ENST00000375782|TMEM82	ENSG00000162460|ENST00000375782|TMEM82	ENSG00000162460|ENST00000375782|TMEM82	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.358642578125	2	598.357899	1194.70125	0.48596	0.00029078	0.60168	0.00036002	1.0876	0.0006508	598.3581639397979	89.116	0.82742	89.115	88.801	89.628	-0.00080872					59	41	2	0	0	0	0.37454	1	23571	23571		8.1555	8.1555	1	187980			52899	5574	30294	30295	64704	64704					0.11168321613718035
VLNTAVDIITT	11	Unmodified	_VLNTAVDIITT_					0	0	0			REV__ENST00000307637.4_1_12:8212234-8212315:-|nuORF	REV__ENST00000307637.4_1_12:8212234-8212315:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3335571289062	2	580.332079	1158.6496	0.27999	0.00016249	1.9028	0.0011043	2.1828	0.0012668	580.3329908718882	91.176	0.19608	91.176	91.043	91.239	0					24	14	2	0	0	0	0.44828	1	24199	24199		4.897	1.0207	1	395920	+		52900	19869	30295	30296	64705	64705					0.07662533129132498
VLNTAVDIITT	11	Unmodified	_VLNTAVDIITT_					0	0	0			REV__ENST00000307637.4_1_12:8212234-8212315:-|nuORF	REV__ENST00000307637.4_1_12:8212234-8212315:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.333984375	2	580.332079	1158.6496	0.2695	0.0001564	2.0618	0.0011965	2.3313	0.0013529	580.332974454481	91.275	0.29482	91.275	91.239	91.534	0					32	22	2	0	0	0	0.44828	1	24308	24308		4.897	1.3005	1	270680	+		52901	19869	30295	30296	64706	64706					0.07662533129132498
VLNTNILNKS	10	Unmodified	_VLNTNILNKS_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.7841796875	2	558.324588	1114.63462	0.32701	0.00018258	0.86403	0.00048241	1.191	0.00066499	558.3252777337955	92.105	0.35955	92.194	91.94	92.3	0.089241					27	21	2	0	0	0	0.31926	1	24400	24400		5.7319	1.4026	1	85973			52902	8109	30296	30297	64707	64707					0.081890860518115
VLNTRNLV	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VLNTRNLV_					1	0	0			REV__ENST00000508599.1_1_4:79854335-79860302:-|nuORF	REV__ENST00000508599.1_1_4:79854335-79860302:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.80035400390625	2	485.787641	969.56073	0.85216	0.00041397	0.28596	0.00013892	1.1381	0.00055289	485.7881160827558	50.287	0.20967	50.308	50.177	50.387	0.020691					18	7	3	0	0	0	0.19197	1	11642	11642		44.407	13.139	1	201950	+		52903	21775	30297	30298	64708	64708					0.07473162680128098
VLNTRNLV	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VLNTRNLV_					1	0	0			REV__ENST00000508599.1_1_4:79854335-79860302:-|nuORF	REV__ENST00000508599.1_1_4:79854335-79860302:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	485.787641	969.56073	0.44554	0.00021644	2.0102	0.00097651	2.4557	0.0011929	485.7885169503616	50.346	0.40803	50.346	50.025	50.433	0	0.025408	0.00068588	NaN	44.407	33	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226710	+		52904	21775	30297	30298							0.07473162680128098
VLNTRNLV	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VLNTRNLV_					1	0	0			REV__ENST00000508599.1_1_4:79854335-79860302:-|nuORF	REV__ENST00000508599.1_1_4:79854335-79860302:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	485.787641	969.56073	0.77935	0.0003786	1.4113	0.00068559	2.1906	0.0010642	485.7881315457142	50.264	0.23664	50.308	50.136	50.372	0.044891	-0.01243	0.00010405	NaN	44.407	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173920	+		52905	21775	30297	30298							0.07473162680128098
VLNTRNLV	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VLNTRNLV_					1	0	0			REV__ENST00000508599.1_1_4:79854335-79860302:-|nuORF	REV__ENST00000508599.1_1_4:79854335-79860302:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	485.787641	969.56073	0.85216	0.00041397	0.28596	0.00013892	1.1381	0.00055289	485.7881160827558	50.287	0.20967	50.308	50.177	50.387	0.020691	-0.012978	-0.0009893	NaN	44.407	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201950	+		52906	21775	30297	30298							0.07473162680128098
VLNVIQAKGF	10	Unmodified	_VLNVIQAKGF_					0	0	0			REV__ENST00000225388.8_1_17:27614080-27614161:-|nuORF	REV__ENST00000225388.8_1_17:27614080-27614161:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3170776367188	2	544.826766	1087.63898	0.56325	0.00030687	-2.4323	-0.0013252	-1.8691	-0.0010183	544.8249537523095	92.874	0.45836	92.963	92.81	93.268	0.089195					58	42	2	0	0	0	0.38233	1	24711	24711		6.7232	0.96273	1	109490	+		52907	19436	30298	30299	64709	64709					0.09866595265361866
VLPARYFYI	9	Unmodified	_VLPARYFYI_					0	0	0		ENST00000460338.5_1_13:103443606-103451020:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.75244140625	2	571.32386	1140.63317	0.32369	0.00018493	0.17968	0.00010265	0.50337	0.00028759	571.3237475321307	65.597	0.62909	65.597	65.242	65.871	0					46	22	3	0	0	0	0.20651	1	16361	16361		26.884	14.352	1	677480			52908	3827	30299	30300	64710	64710					0.06847496753721316
VLPARYFYI	9	Unmodified	_VLPARYFYI_					0	0	0		ENST00000460338.5_1_13:103443606-103451020:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.7525024414062	2	571.32386	1140.63317	0.073278	4.1865E-05	0.54591	0.00031189	0.61918	0.00035375	571.3239133103893	65.435	0.56873	65.524	65.243	65.811	0.088882					48	20	3	0	0	0	0.20651	1	16284	16284		26.884	11.036	1	665110			52909	3827	30299	30300	64711	64711					0.06847496753721316
VLPARYFYI	9	Unmodified	_VLPARYFYI_					0	0	0		ENST00000460338.5_1_13:103443606-103451020:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	ENST00000460338.5_1_13:103443606-103451020:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7525024414062	2	571.32386	1140.63317	0.3322	0.00018979	-0.058965	-3.3688E-05	0.27324	0.00015611	571.3237230395303	65.539	0.50772	65.527	65.319	65.827	-0.011337					35	18	2	0	0	0	0.17611	1	16388	16388		34.102	16.99	1	906930			52910	3827	30299	30300	64712	64712					0.06847496753721316
VLPCPRGWA	9	Unmodified	_VLPCPRGWA_					0	0	0			REV__ENST00000531791.1_1_11:65149642-65149978:-|nuORF	REV__ENST00000531791.1_1_11:65149642-65149978:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.76568603515625	2	499.765655	997.516756	0.28219	0.00014103	-0.032929	-1.6457E-05	0.24926	0.00012457	499.765486641057	69.365	0.70612	69.431	69.178	69.884	0.066048					75	24	4	0	0	0	0.20344	1	17509	17509		23.148	0	1	807690	+		52911	22025	30300	30301	64713	64713					0.01789854982143879
VLPCRPPI	8	Unmodified	_VLPCRPPI_					0	0	0		nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM;NRCAM|p.T524Ifs*9|1|0.28|ENSG00000091129|chr7:108194321-108194322|-/TA|frameshift_variant	nc|ENSG00000091129|Q92823-3|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.25921630859375	2	447.765123	893.515694	0.25298	0.00011327	0.36914	0.00016529	0.62212	0.00027856	447.7652088302972	80.597	0.99828	80.57	80.204	81.202	-0.026817					76	38	3	0	0	0	0.34337	1	20836	20836		5.2307	2.6532	1	1286100			52912	1397	30301	30302	64714	64714					0.06467640613232106
VLPDADTLLHF	11	Unmodified	_VLPDADTLLHF_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;APC|p.R1687Tfs*13|1|0.33|ENSG00000134982|chr5:112840647-112840648|-/A|frameshift_variant	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.8325805664062	2	620.832246	1239.64994	0.026837	1.6661E-05	0.40716	0.00025278	0.434	0.00026944	620.8324861729564	75.671	0.72019	75.671	75.421	76.141	0					51	25	3	0	0	0	0.055577	2	19459	19459;19509		51.63	40.83	1	522020			52913	3835	30302	30303	64715;64716	64715					0.039699528490018565
VLPDADTLLHF	11	Unmodified	_VLPDADTLLHF_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;APC|p.R1687Tfs*13|1|0.33|ENSG00000134982|chr5:112840647-112840648|-/A|frameshift_variant	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.8322143554688	2	620.832246	1239.64994	0.08073	5.012E-05	0.023992	1.4895E-05	0.10472	6.5015E-05	620.8322916225148	75.67	0.62123	75.722	75.454	76.075	0.052361					49	22	3	0	0	0	0.076087	2	19419	19419;19470		45.7	34.205	1	481230			52914	3835	30302	30303	64717;64718	64717					0.039699528490018565
VLPDADTLLHF	11	Unmodified	_VLPDADTLLHF_					0	0	0		nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC;APC|p.R1687Tfs*13|1|0.33|ENSG00000134982|chr5:112840647-112840648|-/A|frameshift_variant	nc|ENSG00000134982|P25054-2|APC	nc|ENSG00000134982|P25054-2|APC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.8321533203125	2	620.832246	1239.64994	0.24027	0.00014917	0.20956	0.0001301	0.44983	0.00027927	620.8322775316733	75.691	0.72166	75.66	75.416	76.137	-0.031487					53	25	3	0	0	0	0.12239	2	19455	19455;19514		38.176	28.025	1	485020			52915	3835	30302	30303	64719;64720	64719					0.039699528490018565
VLPESLPVL	9	Unmodified	_VLPESLPVL_					0	0	0		HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;ENST00000456660.1_1_7:53929927-53930191:+|nuORF	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7972412109375	2	483.797143	965.579734	0.29394	0.00014221	0.029091	1.4074E-05	0.32303	0.00015628	483.79703167865597	76.821	1.381	76.821	76.338	77.719	0					145	50	4	0	0	0	0.0036555	3	19793	19746;19793;19839		97.075	39.603	1	1278000			52916	4788	30303	30304	64721;64722;64723	64722					0.09556699251186274
VLPESLPVL	9	Unmodified	_VLPESLPVL_					0	0	0		HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;ENST00000456660.1_1_7:53929927-53930191:+|nuORF	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7972412109375	2	483.797143	965.579734	0.17627	8.5278E-05	0.13309	6.4388E-05	0.30936	0.00014967	483.7970752410816	76.747	1.4698	76.8	76.345	77.814	0.053413					137	52	4	0	0	0	0.0061338	3	19730	19730;19777;19824		85.357	37.011	1	1500900			52917	4788	30303	30304	64724;64725;64726	64724					0.09556699251186274
VLPESLPVL	9	Unmodified	_VLPESLPVL_					0	0	0		HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant;nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;ENST00000456660.1_1_7:53929927-53930191:+|nuORF	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	HAUS6|p.N829Kfs*10|1|0.05|ENSG00000147874|chr9:19058280-19058281|-/GCCATCT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7972412109375	2	483.797143	965.579734	0.52454	0.00025377	-0.21701	-0.00010499	0.30753	0.00014878	483.796904399779	76.756	1.6103	76.725	76.346	77.956	-0.031487					150	58	4	0	0	0	0.0061338	3	19747	19747;19793;19839		85.357	37.011	1	1262800			52918	4788	30303	30304	64727;64728;64729	64727					0.09556699251186274
VLPHFGALL	9	Unmodified	_VLPHFGALL_					0	0	0			REV__ENST00000598802.1_1_19:50545003-50545258:+|nuORF	REV__ENST00000598802.1_1_19:50545003-50545258:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2341003417969	2	483.792195	965.569838	0.30541	0.00014775	-3.4009	-0.0016453	-3.0955	-0.0014976	483.790786527741	44.379	0.69705	44.379	44.013	44.71	0					39	25	2	0	0	0	0.22431	1	9839	9839		14.582	9.351	1	389480	+		52919	22621	30304	30305	64730	64730					0.08567556036473434
VLPHFNVLF	9	Unmodified	_VLPHFNVLF_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.310546875	2	543.310752	1084.60695	0.7004	0.00038053	-0.34217	-0.0001859	0.35823	0.00019463	543.3105532513853	74.968	0.66418	74.968	74.731	75.395	0					45	23	3	0	0	0	0.14099	1	19254	19254		42.095	17.421	1	419040			52920	1802	30305	30306	64731	64731					0.06803227582213367
VLPHFNVLF	9	Unmodified	_VLPHFNVLF_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.3108520507812	2	543.310752	1084.60695	0.88527	0.00048097	-0.85184	-0.00046282	0.033423	1.8159E-05	543.3103614906737	74.977	0.6116	74.946	74.755	75.367	-0.031479					53	22	3	0	0	0	0.17611	1	19238	19238		34.102	7.7612	1	549200			52921	1802	30305	30306	64732	64732					0.06803227582213367
VLPIRVHTI	9	Unmodified	_VLPIRVHTI_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3373413085938	2	524.337301	1046.66005	0.48533	0.00025447	-0.00272	-1.4262E-06	0.48261	0.00025305	524.3371644104473	43.253	0.59426	43.253	42.982	43.576	0					49	21	4	0	0	0	0.012386	1	9483	9483		75.761	19.584	1	986270			52922	6309	30306	30307	64733	64733					0.13858605364907817
VLPIRVHTI	9	Unmodified	_VLPIRVHTI_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.33740234375	2	524.337301	1046.66005	0.6054	0.00031743	-0.28423	-0.00014903	0.32117	0.0001684	524.3368855444013	43.142	0.76859	43.22	42.968	43.736	0.077518					65	27	4	0	0	0	0.018449	1	9448	9448		66.457	10.28	1	1061400			52923	6309	30306	30307	64734	64734					0.13858605364907817
VLPIRVHTI	9	Unmodified	_VLPIRVHTI_					0	0	0		nc|ENSG00000168906|P31153-2|MAT2A;ENSG00000168906|ENST00000306434|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	nc|ENSG00000168906|P31153-2|MAT2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.33740234375	2	524.337301	1046.66005	0.39548	0.00020736	-0.17008	-8.9179E-05	0.2254	0.00011818	524.3369809871483	43.097	0.68321	43.181	42.92	43.604	0.083996					62	24	4	0	0	0	0.026579	1	9414	9414		61.602	9.9721	1	1286700			52924	6309	30306	30307	64735	64735					0.13858605364907817
VLPKKGWLL	9	Unmodified	_VLPKKGWLL_					0	0	0		ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF;ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF	ENST00000461838.5_1_13:28014569-28024229:-|nuORF	ENST00000461838.5_1_13:28014569-28024229:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2905883789062	2	527.344595	1052.67464	0.76815	0.00040508	0.016863	8.8927E-06	0.78501	0.00041397	527.3446196370027	47.848	0.243	47.848	47.634	47.877	0					14	8	2	0	0	0	0.24311	1	10898	10898		16.942	4.4107	1	1063300			52925	9992	30307	30308	64736	64736					0.1504067751304774
VLPKKGWLL	9	Unmodified	_VLPKKGWLL_					0	0	0		ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF;ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF	ENST00000461838.5_1_13:28014569-28024229:-|nuORF	ENST00000461838.5_1_13:28014569-28024229:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2904052734375	2	527.344595	1052.67464	0.80645	0.00042528	-0.21323	-0.00011245	0.59322	0.00031283	527.3444836878433	47.835	0.34787	47.882	47.621	47.968	0.047523					21	12	2	0	0	0	0.24311	1	10867	10867		11.64	0	1	940810			52926	9992	30307	30308	64737	64737					0.1504067751304774
VLPKKGWLL	9	Unmodified	_VLPKKGWLL_					0	0	0		ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF;ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF	ENST00000461838.5_1_13:28014569-28024229:-|nuORF	ENST00000461838.5_1_13:28014569-28024229:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2901611328125	2	527.344595	1052.67464	0.73048	0.00038521	0.070431	3.7141E-05	0.80091	0.00042235	527.34465818672	47.791	0.50849	47.834	47.587	48.095	0.043324					22	18	2	0	0	0	0.24311	1	10867	10867		11.64	0	1	1009800			52927	9992	30307	30308	64738	64738					0.1504067751304774
VLPKLYVKL	9	Unmodified	_VLPKLYVKL_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.8604125976562	2	536.860078	1071.7056	0.65893	0.00035376	-0.2387	-0.00012815	0.42023	0.00022561	536.8600243166977	53.53	2.1765	53.53	53.148	55.325	0					234	80	5	0	0	0	0.004681	7	12626	12581;12626;12673;12721;12774;12825;12885		88.954	42.933	1	28083000			52928	7993	30308	30309	64739;64740;64741;64742;64743;64744;64745	64740					0.17261830827260383
VLPKLYVKL	9	Unmodified	_VLPKLYVKL_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.8604125976562	2	536.860078	1071.7056	0.32448	0.0001742	0.11187	6.0056E-05	0.43634	0.00023425	536.8602076334903	53.477	1.7896	53.534	53.167	54.956	0.056259					214	67	5	0	0	0	0.010453	7	12660	12567;12612;12660;12708;12759;12808;12884		78.728	34.87	1	30433000			52929	7993	30308	30309	64746;64747;64748;64749;64750;64751;64752	64748					0.17261830827260383
VLPKLYVKL	9	Unmodified	_VLPKLYVKL_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.8605346679688	2	536.860078	1071.7056	0.59574	0.00031983	-0.13979	-7.5049E-05	0.45594	0.00024478	536.8600706196167	53.656	2.951	53.646	53.192	56.143	-0.0096092					266	108	5	0	0	0	0.004681	7	12689	12596;12641;12689;12736;12784;12837;12919		88.954	30.275	1	27898000			52930	7993	30308	30309	64753;64754;64755;64756;64757;64758;64759	64755					0.17261830827260383
VLPLIAAQQEP	11	Unmodified	_VLPLIAAQQEP_					0	0	0			REV__IRF9|p.S391P|1|0.21|ENSG00000213928|chr14:24166185-24166185|T/C|missense_variant	REV__IRF9|p.S391P|1|0.21|ENSG00000213928|chr14:24166185-24166185|T/C|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8449096679688	2	589.842613	1177.67067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.77	1	111.77	111.27	112.27	0								0	0	0	0.38126	1	29062	29062		1.1933	0	1		+		52931	22770	30309	30310	64760	64760					0.08894543228666407
VLPLINSDNI	10	Unmodified	_VLPLINSDNI_					0	0	0			REV__ENSG00000172244|ENST00000306862|C5orf34	REV__ENSG00000172244|ENST00000306862|C5orf34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3015747070312	2	549.313689	1096.61282	0.27211	0.00014947	-2.0652	-0.0011345	-1.7931	-0.00098499	549.3120895132755	18.285	0.65282	18.285	18.024	18.677	0					35	22	2	0	0	0	0.35231	1	1864	1864		12.241	0	1	40531	+		52932	17702	30310	30311	64761	64761					0.06838281303225813
VLPLMLPSF	9	Oxidation (M)	_VLPLM(Oxidation (M))LPSF_		VLPLM(1)LPSF		VLPLM(67)LPSF	0	0	1		nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF	nc|ENSG00000178038|Q60I27-6|ALS2CL	nc|ENSG00000178038|Q60I27-6|ALS2CL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.3143310546875	2	516.793546	1031.57254	0.46014	0.0002378	0.0051035	2.6375E-06	0.46524	0.00024043	516.7936653327987	89.272	0.60197	89.272	88.984	89.586	0					61	30	3	0	0	0	0.0075168	1	23609	23609		67.344	50.402	1	379130			52933	7034	30311	30312	64762	64762		790			0.058016433791181043
VLPLMLPSF	9	Oxidation (M)	_VLPLM(Oxidation (M))LPSF_		VLPLM(1)LPSF		VLPLM(82)LPSF	0	0	1		nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF	nc|ENSG00000178038|Q60I27-6|ALS2CL	nc|ENSG00000178038|Q60I27-6|ALS2CL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.3143310546875	2	516.793546	1031.57254	0.35872	0.00018538	0.3635	0.00018786	0.72222	0.00037324	516.7937333636175	89.152	0.74636	89.242	88.918	89.664	0.090561					74	40	3	0	0	0	0.012601	1	23572	23572		81.864	51.639	1	341780			52934	7034	30311	30312	64763	64763		790			0.058016433791181043
VLPLMLPSF	9	Oxidation (M)	_VLPLM(Oxidation (M))LPSF_		VLPLM(1)LPSF		VLPLM(89)LPSF	0	0	1		nc|ENSG00000178038|Q60I27-6|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF	nc|ENSG00000178038|Q60I27-6|ALS2CL	nc|ENSG00000178038|Q60I27-6|ALS2CL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.314453125	2	516.793546	1031.57254	0.34346	0.0001775	0.89936	0.00046478	1.2428	0.00064228	516.7936505874206	89.224	0.66032	89.223	88.998	89.659	-0.00080872					67	36	2	0	0	0	0.0040732	1	23613	23613		89.427	66.278	1	366740			52935	7034	30311	30312	64764	64764		790			0.058016433791181043
VLPLRALSI	9	Unmodified	_VLPLRALSI_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.3263854980469	2	491.326402	980.638252	0.57912	0.00028454	-0.32028	-0.00015736	0.25884	0.00012718	491.32618544843257	66.051	0.92013	66.051	65.739	66.659	0					74	32	3	0	0	0	0.088391	1	16558	16558		39.957	3.8303	1	2284800	+		52936	18733	30312	30313	64765	64765					0.1471580061631812
VLPLRALSI	9	Unmodified	_VLPLRALSI_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.3262939453125	2	491.326402	980.638252	0.59934	0.00029447	-0.52435	-0.00025763	0.074994	3.6847E-05	491.326147769982	65.952	0.98355	66.04	65.731	66.714	0.088181					97	35	4	0	0	0	0.14076	1	16540	16540		32.305	1.6689	1	2408700	+		52937	18733	30312	30313	64766	64766					0.1471580061631812
VLPLSSGILI	10	Unmodified	_VLPLSSGILI_					0	0	0			REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	REV__nc|ENSG00000151835|Q9NZJ4-2|SACS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.3135070800781	2	506.326068	1010.63758	0.37429	0.00018951	0.74003	0.0003747	1.1143	0.00056421	506.3264458905809	57.978	1.2675	57.961	57.337	58.605	-0.0172					76	46	3	0	0	0	0.3156	1	13872	13872		6.7232	3.1267	1	2681500	+		52938	16560	30313	30314	64767	64767					0.13268961176629546
VLPLWQAW	8	Unmodified	_VLPLWQAW_					0	0	0			REV__nc|ENSG00000114054|P05166-2|PCCB	REV__nc|ENSG00000114054|P05166-2|PCCB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.2749328613281	2	506.78437	1011.55419	0.25891	0.00013121	0.66872	0.00033889	0.92762	0.0004701	506.7844652042178	67.198	0.86639	67.276	66.82	67.687	0.078049					54	25	3	0	0	0	0.34147	1	16758	16758		11.114	0	1	260810	+		52939	22952	30314	30315	64768	64768					0.048872695194063454
VLPMVPAP	8	Unmodified	_VLPMVPAP_					0	0	0		nc|ENSG00000119283|Q6ZTA4-2|TRIM67;ENSG00000119283|ENST00000366653|TRIM67	nc|ENSG00000119283|Q6ZTA4-2|TRIM67	nc|ENSG00000119283|Q6ZTA4-2|TRIM67	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.2317810058594	2	412.24095	822.467346	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.867	1	33.933	33.433	34.433	0.06636								0	0	0	0.3683	1	6617	6617		6.3541	0	1				52940	2867	30315	30316	64769	64769					0.04901146973338655
VLPNAFNIPNR	11	Unmodified	_VLPNAFNIPNR_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.8508911132812	2	627.851304	1253.68806	0.38628	0.00024252	-1.1335	-0.00071169	-0.74725	-0.00046916	627.850580446679	37.18	0.41018	37.273	37.114	37.524	0.093018					32	14	4	0	0	0	0.38623	1	7643	7643		13.042	2.2185	1	300930			52941	1867	30316	30317	64770	64770					0.07135883554315114
VLPNAFNIPNR	11	Unmodified	_VLPNAFNIPNR_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	627.851304	1253.68806	0.79817	0.00050113	-1.4504	-0.00091062	-0.65221	-0.00040949	627.8503738735292	37.326	0.40849	37.326	37.124	37.532	0	0.0073463	-0.00040907	NaN	13.042	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319730			52942	1867	30316	30317							0.07135883554315114
VLPNAFNIPNR	11	Unmodified	_VLPNAFNIPNR_					0	0	0		nc|ENSG00000104093|Q8TDJ6-2|DMXL2;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	627.851304	1253.68806	0.1503	9.4366E-05	-0.8925	-0.00056036	-0.7422	-0.00046599	627.8508195710624	37.27	0.49439	37.357	37.169	37.664	0.08741	0.038359	0.00029146	NaN	13.042	28	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238140			52943	1867	30316	30317							0.07135883554315114
VLPNRPFGLF	10	Unmodified	_VLPNRPFGLF_					0	0	0		ENSG00000005187|ENST00000289416|ACSM3	ENSG00000005187|ENST00000289416|ACSM3	ENSG00000005187|ENST00000289416|ACSM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3355712890625	2	580.334759	1158.65496	0.33619	0.00019511	-0.13854	-8.0401E-05	0.19765	0.0001147	580.3353494843508	58.668	2.7207	58.668	58.216	60.936	0					295	96	6	0	0	0	0.10934	10	14211	14160;14211;14302;14353;14401;14451;14501;14618;14680;14750		46.021	18.392	1	57301000			52944	327	30317	30318	64771;64772;64773;64774;64775;64776;64777;64778;64779;64780	64772					0.08198301502261529
VLPNRPFGLF	10	Unmodified	_VLPNRPFGLF_					0	0	0		ENSG00000005187|ENST00000289416|ACSM3	ENSG00000005187|ENST00000289416|ACSM3	ENSG00000005187|ENST00000289416|ACSM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3348999023438	2	580.334759	1158.65496	0.30148	0.00017496	-0.56379	-0.00032719	-0.26232	-0.00015223	580.3342106968873	62.155	2.5887	62.155	61.623	64.212	0					139	95	2	0	0	0	0.3641	1	15716	15716		10.074	2.7847	1	418800			52945	327	30317	30318	64781	64781					0.08198301502261529
VLPNRPFGLF	10	Unmodified	_VLPNRPFGLF_					0	0	0		ENSG00000005187|ENST00000289416|ACSM3	ENSG00000005187|ENST00000289416|ACSM3	ENSG00000005187|ENST00000289416|ACSM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3350830078125	2	580.334759	1158.65496	0.34253	0.00019878	-0.14017	-8.1344E-05	0.20237	0.00011744	580.3353113866086	58.497	2.9197	58.589	58.168	61.088	0.091301					309	104	6	0	0	0	0.10934	9	14135	14092;14135;14180;14224;14272;14367;14421;14473;14665		46.021	18.392	1	53172000			52946	327	30317	30318	64782;64783;64784;64785;64786;64787;64788;64789;64790	64783					0.08198301502261529
VLPNRPFGLF	10	Unmodified	_VLPNRPFGLF_					0	0	0		ENSG00000005187|ENST00000289416|ACSM3	ENSG00000005187|ENST00000289416|ACSM3	ENSG00000005187|ENST00000289416|ACSM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3348999023438	2	580.334759	1158.65496	0.48551	0.00028176	-0.32812	-0.00019042	0.15739	9.1341E-05	580.3352388400133	58.691	2.7441	58.676	58.169	60.913	-0.014267					295	98	6	0	0	0	0.14015	8	14395	14170;14216;14395;14503;14616;14671;14745;14918		39.957	12.575	1	61730000			52947	327	30317	30318	64791;64792;64793;64794;64795;64796;64797;64798	64793					0.08198301502261529
VLPNRPFGLF	10	Unmodified	_VLPNRPFGLF_					0	0	0		ENSG00000005187|ENST00000289416|ACSM3	ENSG00000005187|ENST00000289416|ACSM3	ENSG00000005187|ENST00000289416|ACSM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3340454101562	2	580.334759	1158.65496	0.2448	0.00014207	-0.46481	-0.00026974	-0.22001	-0.00012768	580.3343053096162	62.241	2.2415	62.232	61.477	63.719	-0.0085526					120	81	2	0	0	0	0.29978	2	15145	15145;15711		20.454	3.198	1	425080			52948	327	30317	30318	64799;64800	64799					0.08198301502261529
VLPNSDFLVHF	11	Unmodified	_VLPNSDFLVHF_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	644.3399658203125	2	644.340238	1286.66592	0.24737	0.00015939	0.061446	3.9592E-05	0.30882	0.00019898	644.3401288700394	73.987	0.68192	73.987	73.604	74.286	0					38	22	2	0	0	0	0.011225	2	18926	18880;18926		67.081	51.832	1	418650			52949	7755	30318	30319	64801;64802	64802					0.03405659085865409
VLPNSDFLVHF	11	Unmodified	_VLPNSDFLVHF_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.3400268554688	2	644.340238	1286.66592	0.34465	0.00022207	0.023472	1.5124E-05	0.36812	0.0002372	644.3402159325443	73.846	0.60274	73.899	73.604	74.207	0.052368					51	20	3	0	0	0	0.029905	2	18912	18863;18912		59.052	44.647	1	612920			52950	7755	30318	30319	64803;64804	64804					0.03405659085865409
VLPNSDFLVHF	11	Unmodified	_VLPNSDFLVHF_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	644.340576171875	2	644.340238	1286.66592	0.3468	0.00022345	0.03376	2.1753E-05	0.38056	0.00024521	644.3403045644221	74.005	0.65773	73.974	73.584	74.241	-0.030655					48	23	3	0	0	0	0.043109	2	18927	18876;18927		55.235	40.829	1	645650			52951	7755	30318	30319	64805;64806	64806					0.03405659085865409
VLPPACAF	8	Unmodified	_VLPPACAF_					0	0	0			REV__UBA5|p.E241Dfs*2|1|0.24|ENSG00000081307|chr3:132672084-132672085|-/TGAT|frameshift_variant	REV__UBA5|p.E241Dfs*2|1|0.24|ENSG00000081307|chr3:132672084-132672085|-/TGAT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2239685058594	2	409.217475	816.420396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.268	1	48.268	47.768	48.768	0								0	0	0	0.35779	1	11031	11031		11.114	4.7604	1		+		52952	13902	30319	30320	64807	64807					0.004842874222049431
VLPPAQFRKR	10	Unmodified	_VLPPAQFRKR_					0	0	0		nc|ENSG00000134884|Q9NWB6-3|ARGLU1;nc|ENSG00000134884|Q9NWB6-2|ARGLU1	nc|ENSG00000134884|Q9NWB6-3|ARGLU1	nc|ENSG00000134884|Q9NWB6-3|ARGLU1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3700561523438	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.44	1	107.44	106.94	107.94	0								0	0	0	0.38126	1	28312	28312		1.6526	0	1				52953	12711	30320	30321	64808	64808					0.13292484033490837
VLPPDVIQQE	10	Unmodified	_VLPPDVIQQE_					0	0	0		ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;ENST00000496235.5_1_22:50685394-50686750:-|nuORF;ENST00000475965.1_1_22:50686143-50686750:-|nuORF;ENST00000471375.5_1_22:50685394-50687307:-|nuORF;nc|ENSG00000100429|Q969S8-5|HDAC10	ENST00000477814.5_1_22:50684197-50686750:-|nuORF	ENST00000477814.5_1_22:50684197-50686750:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3017578125	2	569.311146	1136.60774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.325	1	40.418	39.918	40.918	0.09267								0	0	0	0.3629	1	8590	8590		9.3831	0	1				52954	1597	30321	30322	64809	64809					0.044899774406076176
VLPPSVPFF	9	Unmodified	_VLPPSVPFF_					0	0	0		nc|ENSG00000177873|Q8N2I2-2|ZNF619;ENST00000494154.6_1_3:40523704-40529729:+|nuORF;ENSG00000177873|ENST00000432264|ZNF619;nc|ENSG00000177873|Q8N2I2-4|ZNF619;nc|ENSG00000177873|Q8N2I2|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	nc|ENSG00000177873|Q8N2I2-2|ZNF619	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.7684631347656	2	501.786579	1001.5586	0.52092	0.00026139	-1.5514	-0.00077847	-1.0305	-0.00051708	501.7856416006007	85.332	0.91138	85.413	85.047	85.958	0.080887					54	34	2	0	0	0	0.21303	1	22445	22445		21.747	1.293	1	197210			52955	7021	30322	30323	64810	64810					0.057887339423245976
VLPQRFPQF	9	Unmodified	_VLPQRFPQF_					0	0	0		nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.3193359375	2	566.319109	1130.62366	0.3351	0.00018977	-0.30155	-0.00017077	0.033549	1.8999E-05	566.3189459157104	57.498	1.3115	57.498	56.876	58.187	0					75	47	2	0	0	0	0.014888	3	13902	13850;13902;13958		71.922	48.774	1	2530000			52956	1165	30323	30324	64811;64812;64813	64812					0.06357728468174173
VLPQRFPQF	9	Unmodified	_VLPQRFPQF_					0	0	0		nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.319580078125	2	566.319109	1130.62366	0.39669	0.00022466	0.031296	1.7723E-05	0.42799	0.00024238	566.3192109886334	57.335	1.2888	57.421	57.047	58.336	0.085621					84	46	2	0	0	0	0.012929	2	13845	13795;13845		74.929	53.182	1	2871700			52957	1165	30323	30324	64814;64815	64815					0.06357728468174173
VLPQRFPQF	9	Unmodified	_VLPQRFPQF_					0	0	0		nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	nc|ENSG00000080802|O95628-3|CNOT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.3192138671875	2	566.319109	1130.62366	0.13643	7.7265E-05	0.0032582	1.8452E-06	0.13969	7.911E-05	566.3191720597442	57.622	1.1311	57.605	57.197	58.329	-0.017197					69	41	2	0	0	0	0.0033114	3	13911	13862;13911;13965		99.799	68.531	1	2752300			52958	1165	30323	30324	64816;64817;64818	64817					0.06357728468174173
VLPSDSEAPD	10	Unmodified	_VLPSDSEAPD_					0	0	0		GAPVD1|p.I935Mfs*130|1|0.23|ENSG00000165219|chr9:125337518-125337518|T/-|frameshift_variant;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	GAPVD1|p.I935Mfs*130|1|0.23|ENSG00000165219|chr9:125337518-125337518|T/-|frameshift_variant	GAPVD1|p.I935Mfs*130|1|0.23|ENSG00000165219|chr9:125337518-125337518|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.836669921875	2	515.240386	1028.46622	0.44633	0.00022996	0.75385	0.00038842	1.2002	0.00061838	515.2405413421326	49.3	0.98174	49.3	48.912	49.894	0					75	35	3	0	0	0	0.27772	1	11340	11340		26.884	6.43	1	226170			52959	12347	30324	30325	64819	64819					-0.046874406525148515
VLPSDSEAPD	10	Unmodified	_VLPSDSEAPD_					0	0	0		GAPVD1|p.I935Mfs*130|1|0.23|ENSG00000165219|chr9:125337518-125337518|T/-|frameshift_variant;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1	GAPVD1|p.I935Mfs*130|1|0.23|ENSG00000165219|chr9:125337518-125337518|T/-|frameshift_variant	GAPVD1|p.I935Mfs*130|1|0.23|ENSG00000165219|chr9:125337518-125337518|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.836669921875	2	515.240386	1028.46622	0.23127	0.00011916	0.83926	0.00043242	1.0705	0.00055158	515.2406671075784	49.263	1.0677	49.307	49.016	50.084	0.044891					63	39	2	0	0	0	0.27772	1	11353	11353		26.884	6.43	1	337080			52960	12347	30324	30325	64820	64820					-0.046874406525148515
VLPSPEHMHQA	11	Unmodified	_VLPSPEHMHQA_					0	0	0		LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant;ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF;LYST|p.H1457Ifs*42|1|0.05|ENSG00000143669|chr1:235791873-235791874|-/AT|frameshift_variant;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF;LYST|p.A1574Sfs*8|1|0.25|ENSG00000143669|chr1:235787342-235787343|-/T|frameshift_variant;LYST|p.F1726Lfs*2|1|0.35|ENSG00000143669|chr1:235780901-235780901|A/-|frameshift_variant	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	LYST|p.R3095Efs*37|1|0.09|ENSG00000143669|chr1:235724060-235724060|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.3035278320312	2	623.305872	1244.59719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.43	1	104.43	103.93	104.93	0								0	0	0	0.37252	1	27723	27723		3.2813	0	1				52961	4540	30325	30326	64821	64821					-0.015323284854730446
VLPSQLVIL	9	Unmodified	_VLPSQLVIL_					0	0	0		ENST00000491277.1_1_1:214706191-214706551:-|nuORF	ENST00000491277.1_1_1:214706191-214706551:-|nuORF	ENST00000491277.1_1_1:214706191-214706551:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7945251464844	2	491.320786	980.627018	0.093463	4.592E-05	0.19689	9.6737E-05	0.29035	0.00014266	491.32080663892435	81.593	0.65063	81.662	81.368	82.018	0.068985					49	29	2	0	0	0	0.25431	1	21213	21213		9.3831	0	1	229830			52962	11177	30326	30327	64822	64822					0.1359297852217196
VLPSVLNKF	9	Unmodified	_VLPSVLNKF_					0	0	0		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3003234863281	2	508.810585	1015.60662	0.28542	0.00014523	0.080836	4.113E-05	0.36626	0.00018636	508.81058912746136	59.061	0.90634	59.061	58.654	59.56	0					64	31	3	0	0	0	0.11201	1	14390	14390		36.506	16.053	1	816400			52963	7998	30327	30328	64823	64823					0.09943807862373433
VLPSVLNKF	9	Unmodified	_VLPSVLNKF_					0	0	0		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8105773925781	2	508.810585	1015.60662	0.36142	0.0001839	-0.14229	-7.2399E-05	0.21913	0.0001115	508.81039135486105	59.036	0.5945	59.022	58.746	59.34	-0.014267					50	20	3	0	0	0	0.18936	1	14341	14341		32.786	15.843	1	1054700			52964	7998	30327	30328	64824	64824					0.09943807862373433
VLPTDEWRALL	11	Unmodified	_VLPTDEWRALL_					0	0	0			REV__ENST00000453505.6_1_20:48741597-48767785:-|nuORF	REV__ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.247802734375	3	438.246839	1311.71869	-0.084485	-3.7025E-05	1.6654	0.00072985	1.5809	0.00069283	438.24739690861	23.976	0.6629	23.976	23.616	24.279	0					37	22	2	0	0	0	0.45422	1	3612	3612		4.1166	0.27072	1	64488	+		52965	19174	30328	30329	64825	64825					0.07529617148725265
VLPTWSTPV	9	Unmodified	_VLPTWSTPV_					0	0	0		ENSG00000010610|ENST00000011653|CD4;ENST00000437800.6_1_12:6925109-6928492:+|nuORF	ENSG00000010610|ENST00000011653|CD4	ENSG00000010610|ENST00000011653|CD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.78497314453125	2	500.279118	998.543683	0.19458	9.7342E-05	-0.39182	-0.00019602	-0.19725	-9.8679E-05	500.27885419125374	52.388	0.51867	52.387	52.169	52.688	-0.00081253					28	18	2	0	0	0	0.25066	1	12348	12348		11.64	0	1	352130			52966	425	30329	30330	64826	64826					0.04435242074328016
VLPVRYFYL	9	Unmodified	_VLPVRYFYL_					0	0	0		ENSG00000178202|ENST00000323468|POGLUT3;KDELC2|p.F72Lfs*13|1|0.08|ENSG00000178202|chr11:108491156-108491157|-/AGGTAAG|frameshift_variant;KDELC2|p.P71Hfs*15|1|0.08|ENSG00000178202|chr11:108491158-108491159|-/ATTATTATATACTCCAGAGTCAGCCTTGT|frameshift_variant	ENSG00000178202|ENST00000323468|POGLUT3	ENSG00000178202|ENST00000323468|POGLUT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.3394775390625	2	585.33951	1168.66447	0.39405	0.00023065	-0.11357	-6.6479E-05	0.28048	0.00016417	585.3392561831296	71.897	0.7887	71.897	71.639	72.428	0					46	22	3	0	0	0	0.17787	1	18308	18308		26.884	12.978	1	509320			52967	7044	30330	30331	64827	64827					0.08688069787785935
VLPVRYFYL	9	Unmodified	_VLPVRYFYL_					0	0	0		ENSG00000178202|ENST00000323468|POGLUT3;KDELC2|p.F72Lfs*13|1|0.08|ENSG00000178202|chr11:108491156-108491157|-/AGGTAAG|frameshift_variant;KDELC2|p.P71Hfs*15|1|0.08|ENSG00000178202|chr11:108491158-108491159|-/ATTATTATATACTCCAGAGTCAGCCTTGT|frameshift_variant	ENSG00000178202|ENST00000323468|POGLUT3	ENSG00000178202|ENST00000323468|POGLUT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.3399047851562	2	585.33951	1168.66447	0.35056	0.0002052	0.049159	2.8774E-05	0.39972	0.00023397	585.3396880699779	71.834	0.78222	71.89	71.628	72.411	0.056572					59	26	3	0	0	0	0.22188	1	18284	18284		20.454	5.6154	1	540020			52968	7044	30330	30331	64828	64828					0.08688069787785935
VLPVRYFYL	9	Unmodified	_VLPVRYFYL_					0	0	0		ENSG00000178202|ENST00000323468|POGLUT3;KDELC2|p.F72Lfs*13|1|0.08|ENSG00000178202|chr11:108491156-108491157|-/AGGTAAG|frameshift_variant;KDELC2|p.P71Hfs*15|1|0.08|ENSG00000178202|chr11:108491158-108491159|-/ATTATTATATACTCCAGAGTCAGCCTTGT|frameshift_variant	ENSG00000178202|ENST00000323468|POGLUT3	ENSG00000178202|ENST00000323468|POGLUT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.3394775390625	2	585.33951	1168.66447	0.43525	0.00025477	-0.0018436	-1.0791E-06	0.43341	0.00025369	585.3393617835801	72.001	0.68172	71.973	71.685	72.367	-0.027275					59	24	3	0	0	0	0.12846	1	18312	18312		34.102	16.99	1	613680			52969	7044	30330	30331	64829	64829					0.08688069787785935
VLPVVVFSGV	10	Unmodified	_VLPVVVFSGV_					0	0	0		ENSG00000278195|ENST00000610913|SSTR3	ENSG00000278195|ENST00000610913|SSTR3	ENSG00000278195|ENST00000610913|SSTR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7596435546875	2	508.312961	1014.61137	0.31775	0.00016152	-1.0536	-0.00053555	-0.73583	-0.00037403	508.3123596200815	68.778	0.86425	68.759	68.516	69.381	-0.01915					68	30	3	0	0	0	0.2504	1	17294	17294		34.102	13.649	1	691110			52970	8741	30331	30332	64830	64830					0.10464692005143661
VLPVVVFSGV	10	Unmodified	_VLPVVVFSGV_					0	0	0		ENSG00000278195|ENST00000610913|SSTR3	ENSG00000278195|ENST00000610913|SSTR3	ENSG00000278195|ENST00000610913|SSTR3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	508.312961	1014.61137	0.40021	0.00020343	-1.2036	-0.00061182	-0.80341	-0.00040838	508.31224605470027	68.738	0.93687	68.738	68.491	69.428	0	-0.010466	-0.00010728	NaN	34.102	64	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	732110			52971	8741	30331	30332							0.10464692005143661
VLPVVVFSGV	10	Unmodified	_VLPVVVFSGV_					0	0	0		ENSG00000278195|ENST00000610913|SSTR3	ENSG00000278195|ENST00000610913|SSTR3	ENSG00000278195|ENST00000610913|SSTR3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	508.312961	1014.61137	0.32492	0.00016516	-1.0221	-0.00051953	-0.69716	-0.00035437	508.312448399437	68.678	0.8055	68.75	68.484	69.29	0.071938	0.00079407	7.7279E-05	NaN	34.102	64	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	858090			52972	8741	30331	30332							0.10464692005143661
VLPYYFPTL	9	Unmodified	_VLPYYFPTL_					0	0	0		ENST00000280904.10_2_18:28671106-28672218:-|nuORF	ENST00000280904.10_2_18:28671106-28672218:-|nuORF	ENST00000280904.10_2_18:28671106-28672218:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.8065185546875	2	556.804968	1111.59538	0.32752	0.00018237	-3.0882	-0.0017195	-2.7607	-0.0015372	557.3044451998338	88.289	0.56844	88.286	88.041	88.609	-0.0028458					63	28	3	0	0	0	0.1669	1	23305	23305		28.487	9.2299	1	144080			52973	9115	30332	30333	64831	64831					0.04404985768246661
VLQAADILLYK	11	Unmodified	_VLQAADILLYK_					0	0	0		nc|ENSG00000116874|Q9UGM6-2|WARS2;ENSG00000116874|ENST00000235521|WARS2	nc|ENSG00000116874|Q9UGM6-2|WARS2	nc|ENSG00000116874|Q9UGM6-2|WARS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.8740234375	2	623.873914	1245.73327	0.26828	0.00016737	0.077465	4.8328E-05	0.34574	0.0002157	623.8738430721743	65.435	0.66673	65.435	65.128	65.795	0					70	23	4	0	0	0	4.6059E-05	2	16307	16307;16356		110.18	74.567	1	1037300			52974	2760	30333	30334	64832;64833	64832					0.12023689296825069
VLQAADILLYK	11	Unmodified	_VLQAADILLYK_					0	0	0		nc|ENSG00000116874|Q9UGM6-2|WARS2;ENSG00000116874|ENST00000235521|WARS2	nc|ENSG00000116874|Q9UGM6-2|WARS2	nc|ENSG00000116874|Q9UGM6-2|WARS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.8738403320312	2	623.873914	1245.73327	0.128	7.9855E-05	0.31995	0.00019961	0.44794	0.00027946	623.8739644262804	65.381	0.91797	65.369	65.148	66.066	-0.011337					77	32	4	0	0	0	4.6059E-05	2	16293	16293;16341		110.18	74.567	1	1339000			52975	2760	30333	30334	64834;64835	64834					0.12023689296825069
VLQDWQQYF	9	Unmodified	_VLQDWQQYF_					0	0	0		nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	nc|ENSG00000115839|Q15042-4|RAB3GAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.90576171875	3	409.532868	1225.57677	-0.28437	-0.00011646	-3.1845	-0.0013041	-3.4688	-0.0014206	409.5315991192972	31.433	0.24437	31.433	31.231	31.476	0					12	8	2	0	0	0	0.25431	1	5821	5821		5.7319	0.83484	1	69889			52976	2681	30334	30335	64836	64836					-0.02699175873635795
VLQEKTESLI	10	Unmodified	_VLQEKTESLI_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3341064453125	2	580.332079	1158.6496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.847	1	95.847	95.347	96.347	0								0	0	0	0.37739	1	25593	25593		3.2813	0.54611	1				52977	3332;12691	30335	30336	64837	64837					0.07662533129155236
VLQEKTESLI	10	Unmodified	_VLQEKTESLI_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.844970703125	2	580.332079	1158.6496	0.36951	0.00021444	-0.13376	-7.7623E-05	0.23576	0.00013682	580.3339039215363	88.206	0.413	88.295	88.107	88.52	0.089195					45	19	3	0	0	0	0.38515	1	23238	23238		6.2058	0.47393	1	86337			52978	3332;12691	30335	30336	64838	64838					0.07662533129155236
VLQEKTESLI	10	Unmodified	_VLQEKTESLI_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	580.332079	1158.6496	0.42305	0.00024551	0.40725	0.00023634	0.8303	0.00048185	580.3347514325458	88.244	0.46832	88.244	88.077	88.545	0	-0.025546	0.00037578	NaN	6.2058	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78767			52979	3332;12691	30335	30336							0.07662533129155236
VLQGQPIIV	9	Unmodified	_VLQGQPIIV_					0	0	0			REV__ENSG00000138380|ENST00000438828|CARF	REV__ENSG00000138380|ENST00000438828|CARF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.30242919921875	2	483.80276	965.590967	0.036995	1.7898E-05	-1.2608	-0.00060998	-1.2238	-0.00059208	483.80286366420125	64.988	1.2033	64.988	64.591	65.795	0					136	43	4	0	0	0	0.22883	1	16168	16168		19.439	0	1	2305400	+		52980	15925	30336	30337	64839	64839					0.10679521345321064
VLQGQWMRLC	10	Unmodified	_VLQGQWMRLC_					0	0	0		ENST00000415995.5_1_3:48636563-48647036:-|nuORF;ENSG00000010256|ENST00000203407|UQCRC1;ENST00000480561.5_1_3:48636882-48638270:-|nuORF;ENST00000471189.5_1_3:48636563-48638429:-|nuORF	ENST00000415995.5_1_3:48636563-48647036:-|nuORF	ENST00000415995.5_1_3:48636563-48647036:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.89093017578125	3	411.879216	1232.61582	-0.15761	-6.4917E-05	-0.0063781	-2.627E-06	-0.16399	-6.7544E-05	412.21204233750854	13.603	0.44118	13.504	13.249	13.69	-0.099291					37	15	5	0	0	0	0.32123	1	457	457		0.69767	0.07084	1	38643			52981	418	30337	30338	64840	64840					0.008815098847435365
VLQHQDGL	8	Unmodified	_VLQHQDGL_					0	0	0			REV__nc|ENSG00000166762|Q96P56-4|CATSPER2	REV__nc|ENSG00000166762|Q96P56-4|CATSPER2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.7850341796875	2	455.243067	908.47158	0.23344	0.00010627	1.6136	0.00073459	1.8471	0.00084087	455.2425547092509	38.316	0.10849	38.407	38.347	38.455	0.090881					5	3	2	0	0	0	0.34297	1	7983	7983		2.8892	0	1	42450	+		52982	17338	30338	30339	64841	64841					0.013683277206155253
VLQKHFNISK	10	Unmodified	_VLQKHFNISK_					0	0	0		nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENSG00000115947|ENST00000392857|ORC4	nc|ENSG00000115947|O43929-2|ORC4	nc|ENSG00000115947|O43929-2|ORC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.853759765625	3	405.239907	1212.69789	-0.25277	-0.00010243	0.81428	0.00032998	0.56151	0.00022755	405.2402030962666	27.397	0.6899	27.397	26.953	27.643	0					59	23	5	0	0	0	0.3183	1	4628	4628		8.4443	1.3426	1	217310			52983	2690	30339	30340	64842	64842					0.10005071559703538
VLQKLNEFV	9	Unmodified	_VLQKLNEFV_					0	0	0			REV__nc|ENSG00000091106|Q9NPP4-2|NLRC4	REV__nc|ENSG00000091106|Q9NPP4-2|NLRC4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3174438476562	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.21	1	113.19	112.69	113.69	-0.017303								0	0	0	0.26513	1	29430	29430		1.4819	0	1		+		52984	14057	30340	30341	64843	64843					0.08222889028479585
VLQKPRIVT	9	Unmodified	_VLQKPRIVT_					0	0	0		nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN	nc|ENSG00000156642|Q9Y639-5|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN	nc|ENSG00000156642|Q9Y639-5|NPTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7697143554688	2	527.342584	1052.67061	0.83816	0.000442	-0.93359	-0.00049232	-0.095424	-5.0321E-05	527.3424033886494	45.683	0.38001	45.683	45.452	45.832	0					19	13	2	0	0	0	0.25988	1	10250	10250		3.9444	0	1	88393			52985	5246;12773	30341	30342	64844	64844					0.1463858801932929
VLQKQQLEL	9	Unmodified	_VLQKQQLEL_					0	0	0		nc|ENSG00000154188|Q15389-2|ANGPT1;ENSG00000154188|ENST00000517746|ANGPT1	nc|ENSG00000154188|Q15389-2|ANGPT1	nc|ENSG00000154188|Q15389-2|ANGPT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.75	2	549.829506	1097.64446	0.47817	0.00026291	-0.36136	-0.00019869	0.11681	6.4224E-05	549.8294944343559	56.998	0.34665	57.077	56.857	57.203	0.078674					18	12	2	0	0	0	0.24688	1	13729	13729		14.838	2.5976	1	116400			52986	5111	30342	30343	64845	64845					0.0995427405719056
VLQKSSFPF	9	Unmodified	_VLQKSSFPF_					0	0	0			REV__ENSG00000177853|ENST00000316045|ZNF518A	REV__ENSG00000177853|ENST00000316045|ZNF518A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7633666992188	2	526.792392	1051.57023	0.65734	0.00034628	-0.6935	-0.00036533	-0.036161	-1.9049E-05	526.7919391391224	65.74	0.75036	65.729	65.53	66.28	-0.011337					37	26	2	0	0	0	0.24913	1	16531	16531		12.532	12.532	1	352320	+		52987	18006	30343	30344	64846	64846					0.046509309656585174
VLQLLVKLF	9	Unmodified	_VLQLLVKLF_					0	0	0		ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF	ENSG00000101158|ENST00000652272|NELFCD	ENSG00000101158|ENST00000652272|NELFCD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2763671875	2	536.860078	1071.7056	0.57043	0.00030624	-0.23005	-0.0001235	0.34039	0.00018274	536.8599198435028	55.523	0.71799	55.523	55.274	55.992	0					42	25	2	0	0	0	0.25417	1	13399	13399		4.756	0	1	315820			52988	1668	30344	30345	64847	64847					0.17261830827260383
VLQLQIQD	8	Unmodified	_VLQLQIQD_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.79998779296875	2	478.7742	955.533846	0.48085	0.00023022	-0.68578	-0.00032833	-0.20493	-9.8115E-05	478.7734875016998	64.209	0.48041	64.2	63.962	64.443	-0.0095291					22	17	2	0	0	0	0.34092	1	15930	15930		13.508	0	1	98125			52989	7771	30345	30346	64848	64848					0.054300540689382615
VLQLQQTLF	9	Unmodified	_VLQLQQTLF_					0	0	0		nc|ENSG00000266302|A2RUR9-2|CCDC144A;ENST00000470068.2_1_17:16635099-16667555:+|nuORF;ENST00000328495.9_1_17:16623938-16667555:+|nuORF;nc|ENSG00000266302|A2RUR9-3|CCDC144A;nc|ENSG00000154898|Q8IYA2|CCDC144CP;ENSG00000170160|ENST00000399273|CCDC144A;nc|ENSG00000266302|A2RUR9|CCDC144A	nc|ENSG00000266302|A2RUR9-2|CCDC144A	nc|ENSG00000266302|A2RUR9-2|CCDC144A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3173217773438	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.67	1	113.65	113.15	114.15	-0.017303								0	0	0	0.25631	1	29541	29541		4.3292	0	1				52990	6427	30346	30347	64849	64849					0.08222889028456848
VLQLQQTLF	9	Unmodified	_VLQLQQTLF_					0	0	0		nc|ENSG00000266302|A2RUR9-2|CCDC144A;ENST00000470068.2_1_17:16635099-16667555:+|nuORF;ENST00000328495.9_1_17:16623938-16667555:+|nuORF;nc|ENSG00000266302|A2RUR9-3|CCDC144A;nc|ENSG00000154898|Q8IYA2|CCDC144CP;ENSG00000170160|ENST00000399273|CCDC144A;nc|ENSG00000266302|A2RUR9|CCDC144A	nc|ENSG00000266302|A2RUR9-2|CCDC144A	nc|ENSG00000266302|A2RUR9-2|CCDC144A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3164672851562	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.32	1	118.3	117.8	118.8	-0.024147								0	0	0	0.264	1	30590	30590		1.8442	0	1				52991	6427	30346	30347	64850	64850					0.08222889028456848
VLQLQQTLF	9	Unmodified	_VLQLQQTLF_					0	0	0		nc|ENSG00000266302|A2RUR9-2|CCDC144A;ENST00000470068.2_1_17:16635099-16667555:+|nuORF;ENST00000328495.9_1_17:16623938-16667555:+|nuORF;nc|ENSG00000266302|A2RUR9-3|CCDC144A;nc|ENSG00000154898|Q8IYA2|CCDC144CP;ENSG00000170160|ENST00000399273|CCDC144A;nc|ENSG00000266302|A2RUR9|CCDC144A	nc|ENSG00000266302|A2RUR9-2|CCDC144A	nc|ENSG00000266302|A2RUR9-2|CCDC144A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3175659179688	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.2	1	112.21	111.71	112.71	0.0131								0	0	0	0.24522	1	29206	29206		7.9102	0	1				52992	6427	30346	30347	64851	64851					0.08222889028456848
VLQMRLFL	8	Unmodified	_VLQMRLFL_					0	0	0			REV__ENST00000601134.5_1_19:14805840-14818739:+|nuORF	REV__ENST00000601134.5_1_19:14805840-14818739:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.6341857910156	2	510.307155	1018.59976	0.3636	0.00018555	-0.17654	-9.0092E-05	0.18705	9.5454E-05	510.809732845532	93.996	0.31902	93.995	93.873	94.192	-0.00050354					25	20	2	0	0	0	0.34337	1	25076	25076		5.2307	0	1	51727	+		52993	16928	30347	30348	64852	64852					0.09120171710139857
VLQPKPAIT	9	Unmodified	_VLQPKPAIT_					0	0	0		ENST00000424518.5_1_12:54357896-54358059:-|nuORF	ENST00000424518.5_1_12:54357896-54358059:-|nuORF	ENST00000424518.5_1_12:54357896-54358059:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.76629638671875	2	483.80276	965.590967	0.22844	0.00011052	-0.34014	-0.00016456	-0.1117	-5.404E-05	483.80254469812786	38.683	0.24179	38.774	38.673	38.915	0.090881					12	8	2	0	0	0	0.2451	1	8090	8090		15.847	0	1	95251			52994	10398	30348	30349	64853	64853					0.10679521345309695
VLQPRHVP	8	Unmodified	_VLQPRHVP_					0	0	0			REV__ENST00000354725.7_1_7:127292278-127292377:+|nuORF	REV__ENST00000354725.7_1_7:127292278-127292377:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.266845703125	2	473.285069	944.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.368	1	35.445	34.945	35.945	0.077377								0	0	0	0.35251	1	7068	7068		13.508	0	1		+		52995	20176	30349	30350	64854	64854					0.08108903608172113
VLQPVDQPL	9	Unmodified	_VLQPVDQPL_					0	0	0			REV__NRAP|p.S1061Mfs*12|1|0.15|ENSG00000197893|chr10:113614843-113614843|C/-|frameshift_variant	REV__NRAP|p.S1061Mfs*12|1|0.15|ENSG00000197893|chr10:113614843-113614843|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2771911621094	2	504.78985	1007.56515	0.37734	0.00019048	0.48046	0.00024253	0.8578	0.00043301	504.7901272726459	53.102	1.2543	53.093	52.54	53.794	-0.0096054					82	46	2	0	0	0	0.28128	1	12422	12422		11.64	0	1	1679900	+		52996	18780	30350	30351	64855	64855					0.06166627103038991
VLQQLLSK	8	Unmodified	_VLQQLLSK_					0	0	0		nc|ENSG00000132972|Q9BXT8-4|RNF17;nc|ENSG00000132972|Q9BXT8-5|RNF17;ENSG00000132972|ENST00000255324|RNF17	nc|ENSG00000132972|Q9BXT8-4|RNF17	nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.1615295410156	2	464.794935	927.575317	-0.0021446	-9.9678E-07	0.23139	0.00010755	0.22925	0.00010655	464.79493190855413	24.243	0.65229	24.17	23.791	24.443	-0.072559					45	21	3	0	0	0	0.33993	1	3658	3658		11.64	3.4848	1	166050			52997	3685	30351	30352	64856	64856					0.10863234828275381
VLQQRLRF	8	Unmodified	_VLQQRLRF_					0	0	0			REV__ENSG00000142065|ENST00000270001|ZFP14	REV__ENSG00000142065|ENST00000270001|ZFP14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3245849609375	2	530.324725	1058.6349	0.29228	0.000155	0.00084659	4.4897E-07	0.29312	0.00015545	530.3246441492629	19.176	0.8723	19.176	18.895	19.768	0					67	30	3	0	0	0	0.45015	1	2216	2216		5.7604	0	1	190970	+		52998	16099	30352	30353	64857	64857					0.10792550562314318
VLQSKIGKI	9	Unmodified	_VLQSKIGKI_					0	0	0			REV__ENST00000464508.1_1_20:30135258-30136223:+|nuORF	REV__ENST00000464508.1_1_20:30135258-30136223:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7672119140625	2	493.32386	984.633166	0.22168	0.00010936	0.11699	5.7716E-05	0.33867	0.00016708	493.3237254800931	25.105	0.36134	25.05	24.888	25.25	-0.055929					19	12	2	0	0	0	0.25431	1	3927	3927		9.3831	0	1	59488	+		52999	14293	30353	30354	64858	64858					0.1402349675371397
VLQVNEKSLI	10	Unmodified	_VLQVNEKSLI_					0	0	0		CEP290|p.K1324Nfs*2|1|0.19|ENSG00000198707|chr12:88089089-88089089|T/-|frameshift_variant;CEP290|p.I1874Mfs*11|1|0.27|ENSG00000198707|chr12:88077309-88077309|A/-|frameshift_variant;ENSG00000198707|ENST00000552810|CEP290	CEP290|p.K1324Nfs*2|1|0.19|ENSG00000198707|chr12:88089089-88089089|T/-|frameshift_variant	CEP290|p.K1324Nfs*2|1|0.19|ENSG00000198707|chr12:88089089-88089089|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.314208984375	2	571.842613	1141.67067	0.16147	9.2336E-05	-2.042	-0.0011677	-1.8805	-0.0010754	571.8415348431438	17.312	0.26245	17.195	17.026	17.289	-0.11739					18	9	2	0	0	0	0.32139	1	1578	1578		1.3295	0	1	32611			53000	107	30354	30355	64859	64859					0.10550543228669085
VLQVRKGLQ	9	Unmodified	_VLQVRKGLQ_					0	0	0			REV__ENST00000468825.1_1_7:22179621-22184834:-|nuORF	REV__ENST00000468825.1_1_7:22179621-22184834:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2986450195312	2	520.832383	1039.65021	-1.1207	-0.0005837	-0.075075	-3.9101E-05	-1.1958	-0.0006228	520.8322505971433	34.622	0.62874	34.698	34.414	35.043	0.075306					40	22	2	0	0	0	0.25526	1	6794	6794		7.9102	0	1	571470	+		53001	15799	30355	30356	64860	64860					0.13197417359515384
VLQVWSLL	8	Unmodified	_VLQVWSLL_					0	0	0		ENST00000223369.2_1_7:44246010-44246993:+|nuORF	ENST00000223369.2_1_7:44246010-44246993:+|nuORF	ENST00000223369.2_1_7:44246010-44246993:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2842102050781	2	479.292028	956.569503	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.81	1	57.793	57.293	58.293	-0.0172								0	0	0	0.33941	1	13970	13970		19.439	0	1				53002	8839	30356	30357	64861	64861					0.08948136316621458
VLRARNDL	8	Unmodified	_VLRARNDL_					0	0	0		ENSG00000250565|ENST00000522587|ATP6V1E2	ENSG00000250565|ENST00000522587|ATP6V1E2	ENSG00000250565|ENST00000522587|ATP6V1E2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.79412841796875	2	478.785433	955.556313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.99	1	83.063	82.563	83.563	0.073097								0	0	0	0.35466	1	21683	21683		12.532	0	1				53003	8593	30357	30358	64862	64862					0.07675698257207841
VLREMLKG	8	Unmodified	_VLREMLKG_					0	0	0		L1M1_dup8526|chr15:66988154-66991154:+|1.855404616008009|0.3427794237982891|2.44|523.0|84|3|sense	L1M1_dup8526|chr15:66988154-66991154:+|1.855404616008009|0.3427794237982891|2.44|523.0|84|3|sense	L1M1_dup8526|chr15:66988154-66991154:+|1.855404616008009|0.3427794237982891|2.44|523.0|84|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.2792053222656	2	473.281137	944.547722	0.36211	0.00017138	-2.9844	-0.0014125	-2.6223	-0.0012411	473.2791675533729	48.112	0.67438	48.112	47.908	48.582	0					41	23	3	0	0	0	0.32038	1	10973	10973		28.487	4.4663	1	1379600			53004	12441	30358	30359	64863	64863					0.07323008296407352
VLRGPGRP	8	Unmodified	_VLRGPGRP_					0	0	0		ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.26422119140625	2	426.264136	850.51372	-0.096009	-4.0925E-05	0.86541	0.00036889	0.7694	0.00032797	426.26453713296945	17.008	1.1685	17.008	16.491	17.66	0					100	40	5	0	0	0	0.39956	1	1488	1488		19.439	1.304	1	686820			53005	905	30359	30360	64864	64864					0.08248347919652588
VLRGPGRP	8	Unmodified	_VLRGPGRP_					0	0	0		ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	426.264136	850.51372	-0.28319	-0.00012072	1.0689	0.00045562	0.78568	0.00033491	426.2646419573266	17.196	1.2132	17.079	16.418	17.631	-0.11739	0.030934	0.00013192	NaN	19.439	104	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	641670			53006	905	30359	30360							0.08248347919652588
VLRILSQIF	9	Unmodified	_VLRILSQIF_					0	0	0			REV__ENST00000245448.10_1_14:50779564-50779717:+|nuORF	REV__ENST00000245448.10_1_14:50779564-50779717:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7020263671875	2	544.844959	1087.67537	0.32894	0.00017922	0.72713	0.00039618	1.0561	0.0005754	544.8452371632025	61.485	0.10455	61.475	61.399	61.504	-0.0094566					5	3	2	0	0	0	0.24913	1	15081	15081		7.9102	0.62092	1	70162	+		53007	19503	30360	30361	64865	64865					0.13503472162074104
VLRILSQIF	9	Unmodified	_VLRILSQIF_					0	0	0			REV__ENST00000245448.10_1_14:50779564-50779717:+|nuORF	REV__ENST00000245448.10_1_14:50779564-50779717:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	544.844959	1087.67537	0.28717	0.00015646	0.059393	3.236E-05	0.34656	0.00018882	544.8448930145249	61.492	0.10065	61.492	61.437	61.537	0	0.0082303	-0.00053857	NaN	7.9102	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104880	+		53008	19503	30360	30361							0.13503472162074104
VLRIQEAF	8	Unmodified	_VLRIQEAF_					0	0	0		nc|ENSG00000240891|Q0VAA5-2|PLCXD2;nc|ENSG00000240891|Q0VAA5|PLCXD2;ENSG00000240891|ENST00000636933|PLCXD2	nc|ENSG00000240891|Q0VAA5-2|PLCXD2	nc|ENSG00000240891|Q0VAA5-2|PLCXD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.77117919921875	2	488.284734	974.554916	0.48561	0.00023711	-0.33628	-0.0001642	0.14933	7.2914E-05	488.2846171310859	53.541	0.9598	53.541	53.228	54.188	0					90	35	3	0	0	0	0.35375	1	12818	12818		24.674	0	1	1241600			53009	8526	30361	30362	64866	64866					0.06662064168460802
VLRIQEAF	8	Unmodified	_VLRIQEAF_					0	0	0		nc|ENSG00000240891|Q0VAA5-2|PLCXD2;nc|ENSG00000240891|Q0VAA5|PLCXD2;ENSG00000240891|ENST00000636933|PLCXD2	nc|ENSG00000240891|Q0VAA5-2|PLCXD2	nc|ENSG00000240891|Q0VAA5-2|PLCXD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.77117919921875	2	488.284734	974.554916	0.21631	0.00010562	-0.043226	-2.1107E-05	0.17309	8.4515E-05	488.2847314857574	53.541	1.0446	53.597	53.221	54.265	0.056259					93	39	3	0	0	0	0.35375	1	12792	12792		24.674	1.5255	1	1438000			53010	8526	30361	30362	64867	64867					0.06662064168460802
VLRKVTKI	8	Unmodified	_VLRKVTKI_					0	0	0			REV__nc|ENSG00000032219|P29374-3|ARID4A	REV__nc|ENSG00000032219|P29374-3|ARID4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2938537597656	2	478.834394	955.654236	0.45572	0.00021821	-3.6876	-0.0017658	-3.2319	-0.0015475	478.83261809656943	57.031	0.16825	57.012	56.865	57.033	-0.019081					7	5	2	0	0	0	0.34218	1	13711	13711		9.3474	0	1	172150	+		53011	13496	30362	30363	64868	64868					0.17463506853209765
VLRLCLPPF	9	Unmodified	_VLRLCLPPF_					0	0	0			REV__ENST00000357258.8_2_3:114050167-114050428:-|nuORF	REV__ENST00000357258.8_2_3:114050167-114050428:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8142700195312	2	529.31498	1056.61541	0.69716	0.00036902	0.061841	3.2733E-05	0.759	0.00040175	529.3150772361583	78.259	0.33485	78.318	78.164	78.499	0.058151					16	11	2	0	0	0	0.25879	1	20213	20213		2.0598	0	1	203670	+		53012	20212	30363	30364	64869	64869					0.0893645822718554
VLRLENYERQQ	11	Unmodified	_VLRLENYERQQ_					0	0	0		nc|ENSG00000173805|P54257-3|HAP1;nc|ENSG00000173805|P54257-4|HAP1;ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257|HAP1	nc|ENSG00000173805|P54257-3|HAP1	nc|ENSG00000173805|P54257-3|HAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7660827636719	3	483.259918	1446.75793	0.29541	0.00014276	-0.43728	-0.00021132	-0.14187	-6.8559E-05	483.2596460390195	38.459	0.49348	38.549	38.264	38.758	0.090881					38	17	3	0	0	0	0.3325	1	8041	8041		4.1166	0.52957	1	369180			53013	6751	30364	30365	64870	64870					0.052417174322499704
VLRLNRVN	8	Unmodified	_VLRLNRVN_					0	0	0		nc|ENSG00000090512|Q9UGM5-2|FETUB;ENSG00000090512|ENST00000265029|FETUB	nc|ENSG00000090512|Q9UGM5-2|FETUB	nc|ENSG00000090512|Q9UGM5-2|FETUB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.80126953125	2	492.309075	982.603597	0.36548	0.00017993	0.13823	6.805E-05	0.50371	0.00024798	492.30911261718285	28.992	0.52959	29.004	28.802	29.331	0.012266					25	18	2	0	0	0	0.34247	1	5210	5210		8.5933	0	1	198740			53014	1379	30365	30366	64871	64871					0.11159977528222953
VLRLPSHLL	9	Unmodified	_VLRLPSHLL_					0	0	0		ENST00000607016.1_1_6:34247766-34247973:-|nuORF	ENST00000607016.1_1_6:34247766-34247973:-|nuORF	ENST00000607016.1_1_6:34247766-34247973:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.3193969726562	2	524.337301	1046.66005	0.39548	0.00020736	-0.17008	-8.9179E-05	0.2254	0.00011818	524.3369809871483	43.097	0.68321	43.181	42.92	43.604	0.083996					62	24	4	0	0	0	0.31038	1	9511	9511		7.2892	0	1	1286700			53015	12305	30366	30367	64872	64872					0.13858605364907817
VLRLQQAR	8	Unmodified	_VLRLQQAR_					0	0	0		PTPDC1|p.R743Kfs*9|1|0.72|ENSG00000158079|chr9:94107900-94107901|-/A|frameshift_variant;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1	PTPDC1|p.R743Kfs*9|1|0.72|ENSG00000158079|chr9:94107900-94107901|-/A|frameshift_variant	PTPDC1|p.R743Kfs*9|1|0.72|ENSG00000158079|chr9:94107900-94107901|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.80126953125	2	492.309075	982.603597	0.4966	0.00024448	0.34443	0.00016956	0.84103	0.00041404	492.30905223620704	29.038	0.48241	29.038	28.817	29.3	0					26	17	3	0	0	0	0.34167	1	5213	5213		11.64	3.7301	1	171470			53016	5338	30367	30368	64873	64873					0.11159977528211584
VLRLRCRRLL	10	Unmodified	_VLRLRCRRLL_					0	0	0			REV__nc|ENSG00000132906|P55211-3|CASP9	REV__nc|ENSG00000132906|P55211-3|CASP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.7763977050781	3	433.283564	1296.82886	0.021202	9.1867E-06	-0.75012	-0.00032502	-0.72892	-0.00031583	433.2831672476013	43.652	0.64863	43.73	43.453	44.102	0.077515					51	23	3	0	0	0	0.31696	1	9564	9564		10.151	0	1	648370	+		53017	15593	30368	30369	64874	64874					0.19232183726740004
VLRLRPVVP	9	Unmodified	_VLRLRPVVP_					0	0	0		nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2	nc|ENSG00000231852|P08686-2|CYP21A2	nc|ENSG00000231852|P08686-2|CYP21A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2898559570312	2	524.853119	1047.69168	1.1125	0.0005839	-0.89528	-0.00046989	0.21723	0.00011401	524.8525379477743	50.427	0.6076	50.472	50.185	50.792	0.044891					56	21	4	0	0	0	0.26117	1	11626	11626		2.3027	0	1	966070			53018	8472	30369	30370	64875	64875					0.1697459811882709
VLRLTELL	8	Unmodified	_VLRLTELL_					0	0	0		ENSG00000105397|ENST00000525621|TYK2;ENST00000529422.1_1_19:10461631-10461802:-|nuORF	ENSG00000105397|ENST00000525621|TYK2	ENSG00000105397|ENST00000525621|TYK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7925720214844	2	478.810585	955.606617	0.28549	0.0001367	-0.58575	-0.00028046	-0.30026	-0.00014377	478.81029452750647	53.099	0.27919	53.089	52.863	53.142	-0.0096054					12	9	2	0	0	0	0.34131	1	12490	12490		12.532	0	1	148810			53019	1975	30370	30371	64876	64876					0.12703807862362737
VLRNVSFKF	9	Unmodified	_VLRNVSFKF_					0	0	0			REV__ENST00000464567.1_1_X:100629364-100630272:-|nuORF	REV__ENST00000464567.1_1_X:100629364-100630272:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3268432617188	2	555.326934	1108.63931	0.50964	0.00028302	-1.2833	-0.00071264	-0.77364	-0.00042962	555.3259011424304	52.751	1.292	52.801	52.523	53.815	0.050575					105	47	4	0	0	0	0.18803	1	12480	12480		25.399	0	1	3462700	+		53020	21266	30371	30372	64877	64877					0.08934014985220529
VLRPPGTAL	9	Unmodified	_VLRPPGTAL_					0	0	0		ENSG00000198535|ENST00000355522|C2CD4A	ENSG00000198535|ENST00000355522|C2CD4A	ENSG00000198535|ENST00000355522|C2CD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.28753662109375	2	462.287277	922.560001	-0.07185	-3.3216E-05	0.70584	0.0003263	0.63399	0.00029308	462.2876160957425	41.523	0.96189	41.523	40.847	41.809	0					69	39	3	0	0	0	0.023967	1	8930	8930		62.573	6.3957	1	2402800			53021	8087	30372	30373	64878	64878					0.09562368031083679
VLRPPGTAL	9	Unmodified	_VLRPPGTAL_					0	0	0		ENSG00000198535|ENST00000355522|C2CD4A	ENSG00000198535|ENST00000355522|C2CD4A	ENSG00000198535|ENST00000355522|C2CD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.2872009277344	2	462.287277	922.560001	-0.050765	-2.3468E-05	0.73999	0.00034209	0.68923	0.00031862	462.2875088419594	41.482	0.9824	41.573	40.743	41.725	0.090248					68	38	3	0	0	0	0.0042343	4	8917	8878;8917;8935;8956		92.491	7.2194	1	2839900			53022	8087	30372	30373	64879;64880;64881;64882	64880					0.09562368031083679
VLRPPGTAL	9	Unmodified	_VLRPPGTAL_					0	0	0		ENSG00000198535|ENST00000355522|C2CD4A	ENSG00000198535|ENST00000355522|C2CD4A	ENSG00000198535|ENST00000355522|C2CD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.2873840332031	2	462.287277	922.560001	0.25674	0.00011869	0.22245	0.00010284	0.47918	0.00022152	462.2873036464355	41.422	0.84249	41.518	40.803	41.645	0.096626					54	31	2	0	0	0	0.004681	3	8895	8848;8895;8939		88.954	14.025	1	2449100			53023	8087	30372	30373	64883;64884;64885	64884					0.09562368031083679
VLRQDRRF	8	Unmodified	_VLRQDRRF_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3167114257812	2	545.317432	1088.62031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.54	1	113.52	113.02	114.02	-0.017303								0	0	0	0.37992	1	29512	29512		0.79363	0	1		+		53024	13615	30373	30374	64886	64886					0.07954478414171717
VLRQGLIVL	9	Unmodified	_VLRQGLIVL_					0	0	0			REV__nc|ENSG00000184459|Q8NFQ6-2|BPIFC	REV__nc|ENSG00000184459|Q8NFQ6-2|BPIFC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.8033447265625	2	505.839677	1009.6648	0.27907	0.00014117	-0.08809	-4.4559E-05	0.19098	9.6607E-05	505.83962100014253	43.19	0.65358	43.274	42.978	43.631	0.083992					46	23	3	0	0	0	0.24913	1	9423	9423		7.9102	1.187	1	434840	+		53025	18319	30374	30375	64887	64887					0.16035489507646616
VLRQSHAK	8	Unmodified	_VLRQSHAK_					0	0	0			REV__ENSG00000146966|ENST00000496613|DENND2A	REV__ENSG00000146966|ENST00000496613|DENND2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7869567871094	2	469.780151	937.545748	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.236	1	28.236	27.736	28.736	0								0	0	0	0.33717	1	4898	4898		20.454	1.1966	1		+		53026	16367	30375	30376	64888	64888					0.0744771560279105
VLRRLVLWFFL	11	Unmodified	_VLRRLVLWFFL_					0	0	0			REV__ENSG00000075790|ENST00000005259|BCAP29	REV__ENSG00000075790|ENST00000005259|BCAP29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.9745178222656	3	487.974614	1460.90201	-0.12133	-5.9206E-05	0.70897	0.00034596	0.58765	0.00028676	487.97500657368045	103.03	0.3316	103.03	102.72	103.05	0					87	46	2	0	0	0	0.48173	1	27379	27379		0.50596	0.41111	1	1910200	+		53027	13819	30376	30377	64889	64889					0.1899963572100205
VLRRLVLWFFL	11	Unmodified	_VLRRLVLWFFL_					0	0	0			REV__ENSG00000075790|ENST00000005259|BCAP29	REV__ENSG00000075790|ENST00000005259|BCAP29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.97479248046875	3	487.974614	1460.90201	0.070952	3.4623E-05	0.565	0.00027571	0.63595	0.00031033	487.9748084926534	102.97	0.45118	102.99	102.59	103.04	0.016685					180	61	4	0	0	0	0.48173	2	27314	27314;27372		0.50596	0.50596	1	2522400	+		53028	13819	30376	30377	64890;64891	64890					0.1899963572100205
VLRRLVLWFFL	11	Unmodified	_VLRRLVLWFFL_					0	0	0			REV__ENSG00000075790|ENST00000005259|BCAP29	REV__ENSG00000075790|ENST00000005259|BCAP29	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.9747619628906	3	487.974614	1460.90201	0.25591	0.00012488	0.40567	0.00019795	0.66158	0.00032283	487.9747485039012	103.07	0.43288	103.06	102.7	103.14	-0.0011139					137	54	3	0	0	0	0.48173	1	27374	27374		0.50596	0.41111	1	3539700	+		53029	13819	30376	30377	64892	64892					0.1899963572100205
VLRRQQRMI	9	Unmodified	_VLRRQQRMI_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.7916259765625	2	600.361316	1198.70808	0.50663	0.00030416	-0.62389	-0.00037456	-0.11726	-7.0399E-05	600.3609078915389	70.238	0.36913	70.305	70.101	70.471	0.066048					21	12	2	0	0	0	0.25938	1	17737	17737		4.3292	4.3292	1	126850			53030	2821	30377	30378	64893	64893					0.1166735601327673
VLRVELKHSAN	11	Unmodified	_VLRVELKHSAN_					0	0	0			REV__nc|ENSG00000107669|O95260-2|ATE1	REV__nc|ENSG00000107669|O95260-2|ATE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3858642578125	2	633.369861	1264.72517	-0.059846	-3.7904E-05	1.0073	0.00063802	0.9475	0.00060012	633.3700924003698	104.67	0.2907	104.67	104.51	104.8	0					66	40	2	0	0	0	0.33282	1	27780	27780		2.4985	0	1	91032	+		53031	22934	30378	30379	64894	64894					0.10339555100085818
VLRVWHRSRG	10	Unmodified	_VLRVWHRSRG_					0	0	0		ENST00000464003.1_1_2:206546756-206546807:+|nuORF	ENST00000464003.1_1_2:206546756-206546807:+|nuORF	ENST00000464003.1_1_2:206546756-206546807:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.368896484375	2	633.37053	1264.72651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.54	1	113.54	113.04	114.04	0								0	0	0	0.38202	1	29488	29488		0.40072	0	1				53032	10777	30379	30380	64895	64895					0.10473233979496399
VLSAKKRDE	9	Unmodified	_VLSAKKRDE_					0	0	0			REV__ACIN1|p.P817Hfs*53|1|0.19|ENSG00000100813|chr14:23065992-23065998|GATTTGG/-|frameshift_variant	REV__ACIN1|p.P817Hfs*53|1|0.19|ENSG00000100813|chr14:23065992-23065998|GATTTGG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3036499023438	2	523.303655	1044.59276	0.46593	0.00024382	-0.18092	-9.4674E-05	0.28502	0.00014915	523.3033997985988	81.478	0.93819	81.454	81.045	81.984	-0.02404					126	40	4	0	0	0	0.29176	1	21201	21201		10.074	0	1	1908300	+		53033	13072	30380	30381	64896	64896					0.07224530363282611
VLSARSSRV	9	Unmodified	_VLSARSSRV_					0	0	0		ENST00000274793.11_1_6:46690657-46703025:-|nuORF	ENST00000274793.11_1_6:46690657-46703025:-|nuORF	ENST00000274793.11_1_6:46690657-46703025:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7912902832031	2	487.790715	973.566878	0.29402	0.00014342	0.38023	0.00018547	0.67426	0.0003289	487.790789876972	74.046	2.9193	74.046	73.191	76.11	0					194	103	2	0	0	0	0.30064	3	19235	19182;19235;19287		8.7454	8.7454	1	5545500			53034	9100	30381	30382	64897;64898;64899	64898					0.07903680911658739
VLSARSSRV	9	Unmodified	_VLSARSSRV_					0	0	0		ENST00000274793.11_1_6:46690657-46703025:-|nuORF	ENST00000274793.11_1_6:46690657-46703025:-|nuORF	ENST00000274793.11_1_6:46690657-46703025:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.79156494140625	2	487.790715	973.566878	0.24343	0.00011874	0.49529	0.0002416	0.73872	0.00036034	487.7907981143787	74.006	2.99	74.058	73.198	76.188	0.052361					206	107	2	0	0	0	0.31763	1	19290	19290		6.2058	0	1	5281400			53035	9100	30381	30382	64900	64900					0.07903680911658739
VLSEKHQRL	9	Unmodified	_VLSEKHQRL_					0	0	0			REV__nc|ENSG00000231852|P08686-2|CYP21A2	REV__nc|ENSG00000231852|P08686-2|CYP21A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2575073242188	2	555.324922	1108.63529	0.39848	0.00022128	-0.89085	-0.00049471	-0.49238	-0.00027343	555.3242905250609	44.842	0.55173	44.911	44.599	45.15	0.068569					30	19	2	0	0	0	0.25202	1	10000	10000		6.7232	0	1	460660	+		53036	19136	30382	30383	64901	64901					0.08531925491524817
VLSELRVLS	9	Unmodified	_VLSELRVLS_					0	0	0		UTP14A|p.I484Mfs*38|1|0.07|ENSG00000156697|chrX:129924877-129924878|-/GCAAGTTCAGAGGGGACTAT|frameshift_variant;nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A	UTP14A|p.I484Mfs*38|1|0.07|ENSG00000156697|chrX:129924877-129924878|-/GCAAGTTCAGAGGGGACTAT|frameshift_variant	UTP14A|p.I484Mfs*38|1|0.07|ENSG00000156697|chrX:129924877-129924878|-/GCAAGTTCAGAGGGGACTAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.2983703613281	2	508.310949	1014.60735	0.088639	4.5056E-05	0.34609	0.00017592	0.43473	0.00022098	508.31118621578213	17.447	0.36526	17.33	17.18	17.545	-0.11739					18	12	2	0	0	0	0.31038	1	1699	1699		7.2892	0	1	33931			53037	5250	30383	30384	64902	64902					0.1006260251143658
VLSFALLQN	9	Unmodified	_VLSFALLQN_					0	0	0			REV__nc|ENSG00000130023|Q5T6L9-4|ERMARD	REV__nc|ENSG00000130023|Q5T6L9-4|ERMARD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.8288879394531	2	502.792392	1003.57023	0.32124	0.00016151	1.0455	0.00052569	1.3668	0.0006872	502.7929086550715	51.482	0.37617	51.529	51.245	51.621	0.046577					17	13	2	0	0	0	0.24311	1	12038	12038		16.942	5.302	1	420960	+		53038	15436	30384	30385	64903	64903					0.06858930965654508
VLSFWTVF	8	Unmodified	_VLSFWTVF_					0	0	0			REV__ENST00000351111.6_1_17:45901372-45901534:-|nuORF	REV__ENST00000351111.6_1_17:45901372-45901534:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2897644042969	2	499.770929	997.527304	0.45034	0.00022506	-3.3262	-0.0016623	-2.8759	-0.0014373	499.7693938156467	62.506	0.3788	62.506	62.369	62.747	0					19	13	2	0	0	0	0.33995	1	15491	15491		10.183	4.9527	1	128270	+		53039	20164	30385	30386	64904	64904					0.028441609082278774
VLSFWTVF	8	Unmodified	_VLSFWTVF_					0	0	0			REV__ENST00000351111.6_1_17:45901372-45901534:-|nuORF	REV__ENST00000351111.6_1_17:45901372-45901534:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	499.770929	997.527304	0.39056	0.00019519	-3.5966	-0.0017975	-3.206	-0.0016023	499.7690779901382	62.512	0.34373	62.503	62.302	62.646	-0.0085526	-0.0012818	-0.00012411	NaN	10.183	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116130	+		53040	20164	30385	30386							0.028441609082278774
VLSGDDEEY	9	Unmodified	_VLSGDDEEY_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.3212890625	2	513.716744	1025.41894	0.57398	0.00029486	0.87192	0.00044792	1.4459	0.00074278	513.7171813824942	54.966	0.84287	54.966	54.785	55.628	0					36	30	2	0	0	0	0.25417	1	13145	13145		8.5933	2.2392	1	398300			53041	3189	30386	30387	64905	64905					-0.0927571992351659
VLSGDDEEY	9	Unmodified	_VLSGDDEEY_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.3214111328125	2	513.716744	1025.41894	0.54469	0.00027981	0.61041	0.00031358	1.1551	0.00059339	513.7169236311495	54.874	0.48473	54.937	54.777	55.262	0.063202					26	17	2	0	0	0	0.25417	1	13121	13121		8.5933	4.264	1	476120			53042	3189	30386	30387	64906	64906					-0.0927571992351659
VLSGDDEEY	9	Unmodified	_VLSGDDEEY_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.3213500976562	2	513.716744	1025.41894	0.46417	0.00023845	0.95658	0.00049141	1.4208	0.00072986	513.7172538100792	55.09	0.80178	55.071	54.869	55.671	-0.019077					36	29	2	0	0	0	0.25417	1	13180	13180		4.756	0	1	476650			53043	3189	30386	30387	64907	64907					-0.0927571992351659
VLSGSPPSLT	10	Unmodified	_VLSGSPPSLT_					0	0	0		ENST00000482178.5_1_22:41973324-41980100:-|nuORF	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	ENST00000482178.5_1_22:41973324-41980100:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2771911621094	2	479.266207	956.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.338	1	73.338	72.838	73.838	0								0	0	0	0.35216	1	18739	18739		13.906	0.39817	1				53044	11042	30387	30388	64908	64908					0.03786347832033243
VLSLERGK	8	Unmodified	_VLSLERGK_					0	0	0			REV__CPVL|p.V344Sfs*18|1|0.04|ENSG00000106066|chr7:29064168-29064169|-/AGAAGTGATTTGTAATTTGA|frameshift_variant	REV__CPVL|p.V344Sfs*18|1|0.04|ENSG00000106066|chr7:29064168-29064169|-/AGAAGTGATTTGTAATTTGA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.2480773925781	2	451.276909	900.539266	0.041933	1.8923E-05	0.52948	0.00023894	0.57141	0.00025787	451.27718353910893	28.529	0.37271	28.529	28.418	28.791	0					21	12	2	0	0	0	0.3366	1	5040	5040		18.135	0	1	143160	+		53045	13285	30388	30389	64909	64909					0.08501777651429165
VLSNLGDLL	9	Unmodified	_VLSNLGDLL_					0	0	0			REV__ROCK2|p.K892Tfs*35|1|0.04|ENSG00000134318|chr2:11201358-11201359|-/AGGGAGCTTAAAGAAGAATG|frameshift_variant	REV__ROCK2|p.K892Tfs*35|1|0.04|ENSG00000134318|chr2:11201358-11201359|-/AGGGAGCTTAAAGAAGAATG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2899475097656	2	472.276575	942.538597	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.499	1	53.489	52.989	53.989	-0.0096054								0	0	0	0.19013	1	12631	12631		25.399	0	1		+		53046	15666	30389	30390	64910	64910					0.06502938211713172
VLSNWPAGL	9	Unmodified	_VLSNWPAGL_					0	0	0			REV__ENST00000465160.2_1_9:140286885-140287641:-|nuORF	REV__ENST00000465160.2_1_9:140286885-140287641:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.76373291015625	2	478.763635	955.512717	0.20608	9.8661E-05	0.34957	0.00016736	0.55565	0.00026602	478.76364641802235	58.805	0.81598	58.805	58.564	59.38	0					61	28	3	0	0	0	0.1524	1	14297	14297		39.957	5.8549	1	1073300	+		53047	21271	30390	30391	64911	64911					0.03318088760090632
VLSNWPAGL	9	Unmodified	_VLSNWPAGL_					0	0	0			REV__ENST00000465160.2_1_9:140286885-140287641:-|nuORF	REV__ENST00000465160.2_1_9:140286885-140287641:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	478.763635	955.512717	0.30773	0.00014733	0.24168	0.00011571	0.5494	0.00026303	478.76363825194517	58.691	0.70952	58.783	58.474	59.183	0.091305	0.0062239	2.7157E-05	NaN	39.957	55	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	979700	+		53048	21271	30390	30391							0.03318088760090632
VLSPTIRPV	9	Unmodified	_VLSPTIRPV_					0	0	0		ENST00000261712.7_1_17:30808180-30808330:+|nuORF	ENST00000261712.7_1_17:30808180-30808330:+|nuORF	ENST00000261712.7_1_17:30808180-30808330:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7828063964844	2	491.30821	980.601866	0.24511	0.00012042	-0.098453	-4.8371E-05	0.14665	7.2052E-05	491.3081664443896	26.564	0.37369	26.564	26.44	26.813	0					21	12	2	0	0	0	0.2451	1	4371	4371		15.847	4.2069	1	72391			53049	8974	30391	30392	64912	64912					0.11078923719617251
VLSQLNELRLQ	11	Unmodified	_VLSQLNELRLQ_					0	0	0		ENSG00000177125|ENST00000319119|ZBTB34;nc|ENSG00000177125|Q8NCN2|ZBTB34	ENSG00000177125|ENST00000319119|ZBTB34	ENSG00000177125|ENST00000319119|ZBTB34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2574157714844	3	438.257626	1311.75105	-0.056604	-2.4807E-05	-0.2536	-0.00011114	-0.3102	-0.00013595	438.25762504099686	23.666	0.38861	23.594	23.368	23.756	-0.072559					30	13	3	0	0	0	0.43809	1	3528	3528		6.2344	0	1	94745			53050	6964	30392	30393	64913	64913					0.10764404551696316
VLSRPLDSP	9	Unmodified	_VLSRPLDSP_					0	0	0			REV__ENSG00000156140|ENST00000286657|ADAMTS3	REV__ENSG00000156140|ENST00000286657|ADAMTS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.27960205078125	2	492.279649	982.544745	0.39517	0.00019453	-0.24907	-0.00012261	0.1461	7.1924E-05	492.2791924847242	21.626	0.90689	21.626	20.912	21.819	0					62	31	3	0	0	0	0.20626	2	2874	2874;2904		22.736	1.1993	1	168780	+		53051	16732	30393	30394	64914;64915	64914					0.05277456443241135
VLSRPLDSP	9	Unmodified	_VLSRPLDSP_					0	0	0			REV__ENSG00000156140|ENST00000286657|ADAMTS3	REV__ENSG00000156140|ENST00000286657|ADAMTS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2672119140625	2	492.279649	982.544745	0.48354	0.00023804	-0.085663	-4.217E-05	0.39788	0.00019587	492.2792074371322	21.623	0.81523	21.523	20.989	21.804	-0.10034					69	28	3	0	0	0	0.20626	1	2933	2933		22.736	0.98964	1	240160	+		53052	16732	30393	30394	64916	64916					0.05277456443241135
VLSRRHHCL	9	Unmodified	_VLSRRHHCL_					0	0	0		ENST00000594624.6_1_19:43156221-43156347:+|nuORF	ENST00000594624.6_1_19:43156221-43156347:+|nuORF	ENST00000594624.6_1_19:43156221-43156347:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3641357421875	2	560.811459	1119.60837	0.047595	2.6692E-05	-0.28342	-0.00015894	-0.23582	-0.00013225	560.811149984256	40.873	0.42661	40.972	40.724	41.151	0.099407					24	15	2	0	0	0	0.2451	1	8698	8698		15.847	5.7733	1	463960			53053	12216	30394	30395	64917	64917					0.05334538399347366
VLSRWRVF	8	Unmodified	_VLSRWRVF_					0	0	0		ENSG00000105707|ENST00000672452|HPN	ENSG00000105707|ENST00000672452|HPN	ENSG00000105707|ENST00000672452|HPN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8162231445312	2	531.813993	1061.61343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.031	1	91.032	90.532	91.532	0.00046539								0	0	0	0.36336	1	24144	24144		8.5933	0	1				53054	2013	30395	30396	64918	64918					0.08509165533587293
VLSSHLVL	8	Unmodified	_VLSSHLVL_					0	0	0			REV__ENSG00000186919|ENST00000334586|ZACN	REV__ENSG00000186919|ENST00000334586|ZACN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.2684326171875	2	434.268553	866.522553	0.4328	0.00018795	-0.32385	-0.00014064	0.10896	4.7316E-05	434.26830740783396	56.179	0.88324	56.179	55.992	56.876	0					61	32	3	0	0	0	0.2705	1	13499	13499		34.187	3.9625	1	1524100	+		53055	18480	30396	30397	64919	64919					0.08395276765452309
VLSSHLVL	8	Unmodified	_VLSSHLVL_					0	0	0			REV__ENSG00000186919|ENST00000334586|ZACN	REV__ENSG00000186919|ENST00000334586|ZACN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.2685241699219	2	434.268553	866.522553	0.51339	0.00022295	-0.5604	-0.00024336	-0.047003	-2.0412E-05	434.26821600154744	56.105	0.86324	56.176	55.958	56.822	0.070889					57	31	3	0	0	0	0.2705	2	13449	13449;13499		34.187	7.8461	1	1219000	+		53056	18480	30396	30397	64920;64921	64920					0.08395276765452309
VLSSHLVL	8	Unmodified	_VLSSHLVL_					0	0	0			REV__ENSG00000186919|ENST00000334586|ZACN	REV__ENSG00000186919|ENST00000334586|ZACN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.2684326171875	2	434.268553	866.522553	0.52836	0.00022945	-0.32894	-0.00014285	0.19942	8.6602E-05	434.26828645166535	56.283	0.65075	56.264	55.942	56.592	-0.019081					40	23	2	0	0	0	0.2157	1	13472	13472		40.449	4.4044	1	2290500	+		53057	18480	30396	30397	64922	64922					0.08395276765452309
VLSSHLVL	8	Unmodified	_VLSSHLVL_					0	0	0			REV__ENSG00000186919|ENST00000334586|ZACN	REV__ENSG00000186919|ENST00000334586|ZACN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	434.268553	866.522553	0.51339	0.00022295	-0.5604	-0.00024336	-0.047003	-2.0412E-05	434.26821600154744	56.105	0.86324	56.176	55.958	56.822	0.070889	-0.030158	-9.428E-05	NaN	40.449	57	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1219000	+		53058	18480	30396	30397							0.08395276765452309
VLSSHLVL	8	Unmodified	_VLSSHLVL_					0	0	0			REV__ENSG00000186919|ENST00000334586|ZACN	REV__ENSG00000186919|ENST00000334586|ZACN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	434.268553	866.522553	0.52836	0.00022945	-0.32894	-0.00014285	0.19942	8.6602E-05	434.26828645166535	56.283	0.65075	56.264	55.942	56.592	-0.019081	0.057549	0.00010675	NaN	40.449	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2290500	+		53059	18480	30396	30397							0.08395276765452309
VLSSHVLLK	9	Unmodified	_VLSSHVLLK_					0	0	0			REV__nc|ENSG00000110077|Q9H2W1-3|MS4A6A	REV__nc|ENSG00000110077|Q9H2W1-3|MS4A6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.316162109375	2	498.316035	994.617516	0.43856	0.00021854	-0.031099	-1.5497E-05	0.40746	0.00020305	498.31601842249256	37.472	0.51267	37.559	37.305	37.817	0.08741					33	18	2	0	0	0	0.26612	1	7746	7746		13.906	1.6654	1	224740	+		53060	14662	30397	30398	64923	64923					0.11999210236672297
VLSSHVLLK	9	Unmodified	_VLSSHVLLK_					0	0	0			REV__nc|ENSG00000110077|Q9H2W1-3|MS4A6A	REV__nc|ENSG00000110077|Q9H2W1-3|MS4A6A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	498.316035	994.617516	0.76932	0.00038336	-0.16716	-8.33E-05	0.60216	0.00030006	498.3158627281662	37.521	0.48272	37.521	37.285	37.767	0	-0.0073072	-0.00020124	NaN	13.906	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267730	+		53061	14662	30397	30398							0.11999210236672297
VLSSHVLLK	9	Unmodified	_VLSSHVLLK_					0	0	0			REV__nc|ENSG00000110077|Q9H2W1-3|MS4A6A	REV__nc|ENSG00000110077|Q9H2W1-3|MS4A6A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	498.316035	994.617516	0.43856	0.00021854	-0.031099	-1.5497E-05	0.40746	0.00020305	498.31601842249256	37.472	0.51267	37.559	37.305	37.817	0.08741	0.030698	-6.5633E-05	NaN	13.906	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224740	+		53062	14662	30397	30398							0.11999210236672297
VLSSHVLLK	9	Unmodified	_VLSSHVLLK_					0	0	0			REV__nc|ENSG00000110077|Q9H2W1-3|MS4A6A	REV__nc|ENSG00000110077|Q9H2W1-3|MS4A6A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.316035	994.617516	0.38997	0.00019433	0.17387	8.6643E-05	0.56384	0.00028097	498.31600911517614	37.412	0.40431	37.505	37.331	37.735	0.093018	-0.023391	0.00013865	NaN	13.906	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280730	+		53063	14662	30397	30398							0.11999210236672297
VLSSRRPA	8	Unmodified	_VLSSRRPA_					0	0	0		ENST00000591501.1_1_19:10763903-10764383:-|nuORF	ENST00000591501.1_1_19:10763903-10764383:-|nuORF	ENST00000591501.1_1_19:10763903-10764383:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.6019592285156	2	443.266876	884.519199	0.045769	2.0288E-05	0.29134	0.00012914	0.33711	0.00014943	443.2669030805487	22.529	0.63531	22.484	22.182	22.817	-0.044867					38	21	2	0	0	0	0.34297	1	3083	3083		6.3541	0	1	312970			53064	12186	30398	30399	64924	64924					0.07232026711460549
VLSSRRPA	8	Unmodified	_VLSSRRPA_					0	0	0		ENST00000591501.1_1_19:10763903-10764383:-|nuORF	ENST00000591501.1_1_19:10763903-10764383:-|nuORF	ENST00000591501.1_1_19:10763903-10764383:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	443.266876	884.519199	0.0016156	7.1612E-07	0.34729	0.00015394	0.3489	0.00015466	443.2669537354252	22.528	0.65358	22.44	22.166	22.82	-0.087608	-0.022041	2.9054E-05	NaN	6.3541	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308180			53065	12186	30398	30399							0.07232026711460549
VLSTLRAIAG	10	Unmodified	_VLSTLRAIAG_					0	0	0		nc|ENSG00000105676|Q6NXE6-2|ARMC6;ENSG00000105676|ENST00000535612|ARMC6	nc|ENSG00000105676|Q6NXE6-2|ARMC6	nc|ENSG00000105676|Q6NXE6-2|ARMC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8114013671875	2	500.811116	999.60768	0.62489	0.00031295	0.16102	8.0641E-05	0.78591	0.00039359	500.8111917938338	20.211	0.48076	20.158	19.906	20.387	-0.053623					22	17	2	0	0	0	0.35231	1	2456	2456		12.241	1.4167	1	192190			53066	2007	30399	30400	64925	64925					0.10786022231263814
VLSTNLGVFL	10	Unmodified	_VLSTNLGVFL_					0	0	0			REV__ENST00000256257.1_1_8:33424221-33424608:-|nuORF	REV__ENST00000256257.1_1_8:33424221-33424608:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.816650390625	2	531.813325	1061.6121	0.43377	0.00023069	1.3948	0.00074178	1.8286	0.00097246	531.8157162618072	87.445	1.6087	87.532	86.658	88.266	0.087097					99	78	2	0	0	0	0.38773	1	23151	23151		5.7319	0.50118	1	182500	+		53067	19553	30400	30401	64926	64926					0.08375486654176711
VLSTSHPA	8	Unmodified	_VLSTSHPA_					0	0	0		ENST00000571688.5_2_16:11643339-11643465:-|nuORF	ENST00000571688.5_2_16:11643339-11643465:-|nuORF	ENST00000571688.5_2_16:11643339-11643465:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.8890075683594	2	406.21906	810.423567	-0.13042	-5.2981E-05	1.6374	0.00066515	1.507	0.00061216	406.21982216729	17.558	1.066	17.558	16.925	17.991	0					50	36	2	0	0	0	0.34319	1	1778	1778		5.7604	2.8712	1	50337			53068	12027	30401	30402	64927	64927					0.0107725380055399
VLSTSSMSSL	10	Unmodified	_VLSTSSMSSL_					0	0	0		ENST00000530948.5_1_11:117052213-117053271:+|nuORF	ENST00000530948.5_1_11:117052213-117053271:+|nuORF	ENST00000530948.5_1_11:117052213-117053271:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2555847167969	2	506.254982	1010.49541	0.04015	2.0326E-05	1.1245	0.00056931	1.1647	0.00058963	506.2557168438664	15.468	0.9564	15.404	15.247	16.203	-0.064414					70	32	3	0	0	0	0.38515	1	1135	1135		6.2058	0.9089	1	1817800			53069	11622	30402	30403	64928	64928					-0.009416196278721145
VLSVCVWVI	9	Unmodified	_VLSVCVWVI_					0	0	0		ENSG00000138271|ENST00000260843|GPR87	ENSG00000138271|ENST00000260843|GPR87	ENSG00000138271|ENST00000260843|GPR87	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2951965332031	2	509.293714	1016.57287	0.33851	0.0001724	2.1649	0.0011026	2.5034	0.001275	509.29496613813626	30.06	0.70876	30.087	29.699	30.408	0.026222					40	24	3	0	0	0	0.15464	1	5461	5461		38.151	6.0342	1	259750			53070	4133	30403	30404	64929	64929					0.06525063098956707
VLSWLQKL	8	Unmodified	_VLSWLQKL_					0	0	0		ENST00000217173.6_1_20:3089740-3090079:-|nuORF	ENST00000217173.6_1_20:3089740-3090079:-|nuORF	ENST00000217173.6_1_20:3089740-3090079:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7926330566406	2	493.805303	985.596052	0.45682	0.00022558	-0.18369	-9.0706E-05	0.27313	0.00013487	493.8052681106217	56.851	0.39494	56.93	56.73	57.125	0.078674					24	14	2	0	0	0	0.4419	1	13720	13720		8.5933	1.8701	1	299370			53071	8823	30404	30405	64930	64930					0.10267825207927217
VLSWSIASGP	10	Unmodified	_VLSWSIASGP_					0	0	0		ENST00000236412.11_1_1:28157683-28169749:+|nuORF	ENST00000236412.11_1_1:28157683-28169749:+|nuORF	ENST00000236412.11_1_1:28157683-28169749:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.2951965332031	2	508.7742	1015.53385	0.33514	0.00017051	-1.2197	-0.00062054	-0.88453	-0.00045003	508.7736799446587	29.958	0.51748	29.97	29.685	30.202	0.012266					33	17	3	0	0	0	0.3156	1	5461	5461		10.824	0	1	196960			53072	8875	30405	30406	64931	64931					0.02670054068948957
VLTAQRQQ	8	Unmodified	_VLTAQRQQ_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2701416015625	2	472.269616	942.524678	-0.16068	-7.5887E-05	1.0117	0.00047779	0.85101	0.0004019	472.2700549645344	13.392	0.38513	13.324	13.189	13.574	-0.067495					36	13	4	0	0	0	0.3671	1	419	419		23.148	0	1	227320	+		53073	15297	30406	30407	64932	64932					0.051117055032818826
VLTCLFESL	9	Unmodified	_VLTCLFESL_					0	0	0		ENSG00000005243|ENST00000621465|COPZ2	ENSG00000005243|ENST00000621465|COPZ2	ENSG00000005243|ENST00000621465|COPZ2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7892456054688	2	512.772811	1023.53107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.095	1	92.095	91.595	92.595	0								0	0	0	0.18374	1	24481	24481		26.884	5.137	1				53074	330	30407	30408	64933	64933					0.020244626197836624
VLTCLFESL	9	Unmodified	_VLTCLFESL_					0	0	0		ENSG00000005243|ENST00000621465|COPZ2	ENSG00000005243|ENST00000621465|COPZ2	ENSG00000005243|ENST00000621465|COPZ2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7891845703125	2	512.772811	1023.53107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.962	1	92.053	91.553	92.553	0.090668								0	0	0	0.20238	1	24434	24434		21.747	0	1				53075	330	30407	30408	64934	64934					0.020244626197836624
VLTCLFESL	9	Unmodified	_VLTCLFESL_					0	0	0		ENSG00000005243|ENST00000621465|COPZ2	ENSG00000005243|ENST00000621465|COPZ2	ENSG00000005243|ENST00000621465|COPZ2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7892456054688	2	512.772811	1023.53107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.955	1	91.955	91.455	92.455	0.00046539								0	0	0	0.18374	1	24431	24431		26.884	1.4843	1				53076	330	30407	30408	64935	64935					0.020244626197836624
VLTCYDKWTDG	11	Unmodified	_VLTCYDKWTDG_					0	0	0			REV__ENSG00000119138|ENST00000377126|KLF9	REV__ENSG00000119138|ENST00000377126|KLF9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.5674743652344	3	434.200789	1299.58054	-0.22067	-9.5817E-05	-0.77027	-0.00033445	-0.99095	-0.00043027	434.53330570615117	49.063	0.90898	49.095	48.878	49.787	0.032043					39	32	2	0	0	0	0.33202	1	11371	11371		1.3296	0	1	112440	+		53077	15029	30408	30409	64936	64936					-0.05726874162110107
VLTEVVPIH	9	Unmodified	_VLTEVVPIH_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.31622314453125	2	503.800217	1005.58588	0.79055	0.00039828	-0.55396	-0.00027909	0.23658	0.00011919	503.7999552272518	36.576	0.38809	36.669	36.458	36.846	0.093018					17	13	2	0	0	0	0.155	1	7424	7424		30.225	7.0764	1	144870			53078	7372	30409	30410	64937	64937					0.08331217482702868
VLTFLDSHC	9	Unmodified	_VLTFLDSHC_					0	0	0		nc|ENSG00000100626|Q8N428-2|GALNT16;ENSG00000100626|ENST00000448469|GALNT16;nc|ENSG00000143641|Q10471-2|GALNT2;nc|ENSG00000174473|Q49A17-2|GALNTL6;ENSG00000174473|ENST00000506823|GALNTL6;ENSG00000143641|ENST00000366672|GALNT2	nc|ENSG00000100626|Q8N428-2|GALNT16;ENSG00000143641|ENST00000366672|GALNT2	ENSG00000143641|ENST00000366672|GALNT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8341674804688	2	517.75241	1033.49027	0.47632	0.00024662	0.20712	0.00010724	0.68344	0.00035385	517.7524497151497	41.915	0.84824	42.011	41.79	42.638	0.096622					57	29	3	0	0	0	0.23783	1	9172	9172		18.135	0	1	1938200			53079	1618;4537	30410	30411	64938	64938					-0.025138786998240903
VLTNGLVSL	9	Unmodified	_VLTNGLVSL_					0	0	0			REV__ENSG00000163394|ENST00000295589|CCKAR	REV__ENSG00000163394|ENST00000295589|CCKAR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.786865234375	2	458.279118	914.543683	0.14391	6.595E-05	-0.17069	-7.8224E-05	-0.026784	-1.2274E-05	458.2789600200744	39.616	0.63805	39.716	39.452	40.09	0.099407					42	22	3	0	0	0	0.10058	1	8390	8390		53.833	1.5644	1	621060	+		53080	17050	30411	30412	64939	64939					0.08299242074338053
VLTPPLFIG	9	Unmodified	_VLTPPLFIG_					0	0	0		ENST00000361906.7_1_22:38617127-38617379:-|nuORF	ENST00000361906.7_1_22:38617127-38617379:-|nuORF	ENST00000361906.7_1_22:38617127-38617379:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.79461669921875	2	478.794404	955.574254	0.3823	0.00018305	-0.76879	-0.00036809	-0.38648	-0.00018505	478.7940906716451	82.953	0.57677	83.026	82.823	83.4	0.073097					35	21	2	0	0	0	0.27532	1	21729	21729		12.532	0	1	199340			53081	9701	30412	30413	64940	64940					0.09469020459380317
VLTRSIAI	8	Unmodified	_VLTRSIAI_					0	0	0		SLC11A2|p.A506Dfs*24|1|0.32|ENSG00000110911|chr12:50990850-50990853|AATG/-|frameshift_variant;nc|ENSG00000110911|P49281-5|SLC11A2;ENSG00000110911|ENST00000262052|SLC11A2;nc|ENSG00000110911|P49281|SLC11A2;nc|ENSG00000110911|P49281-3|SLC11A2;nc|ENSG00000110911|P49281-4|SLC11A2	SLC11A2|p.A506Dfs*24|1|0.32|ENSG00000110911|chr12:50990850-50990853|AATG/-|frameshift_variant	SLC11A2|p.A506Dfs*24|1|0.32|ENSG00000110911|chr12:50990850-50990853|AATG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.92352294921875	2	436.781828	871.549102	0.085	3.7127E-05	-0.20287	-8.8612E-05	-0.11787	-5.1485E-05	436.7816933872495	55.168	0.31691	55.168	55.008	55.325	0					13	11	2	0	0	0	0.32886	1	13172	13172		21.747	5.8995	1	183030			53082	2337	30413	30414	64941	64941					0.10818965656790169
VLTSLLQAR	9	Unmodified	_VLTSLLQAR_					0	0	0		ENST00000496347.1_1_2:240108281-240108515:-|nuORF	ENST00000496347.1_1_2:240108281-240108515:-|nuORF	ENST00000496347.1_1_2:240108281-240108515:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3035583496094	2	500.811116	999.60768	0.32546	0.00016299	0.37028	0.00018544	0.69574	0.00034843	500.8112497693693	20.102	0.38631	20.102	19.849	20.235	0					21	14	2	0	0	0	0.26188	1	2374	2374		1.6526	0	1	215250			53083	11232	30414	30415	64942	64942					0.10786022231286552
VLTSLLQAR	9	Unmodified	_VLTSLLQAR_					0	0	0		ENST00000496347.1_1_2:240108281-240108515:-|nuORF	ENST00000496347.1_1_2:240108281-240108515:-|nuORF	ENST00000496347.1_1_2:240108281-240108515:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8113708496094	2	500.811116	999.60768	0.62489	0.00031295	0.16102	8.0641E-05	0.78591	0.00039359	500.8111917938338	20.211	0.48076	20.158	19.906	20.387	-0.053623					22	17	2	0	0	0	0.31038	1	2505	2505		7.2892	0	1	192190			53084	11232	30414	30415	64943	64943					0.10786022231286552
VLTTGSGFLKK	11	Unmodified	_VLTTGSGFLKK_					0	0	0			REV__nc|ENSG00000211690|A0A075B6S0|TRGJ1	REV__nc|ENSG00000211690|A0A075B6S0|TRGJ1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8425903320312	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.43	1	113.41	112.91	113.91	-0.017303								0	0	0	0.36137	1	29486	29486		5.7319	2.1354	1		+		53085	23177	30415	30416	64944	64944					0.10690847091291289
VLTWDSDKRE	10	Unmodified	_VLTWDSDKRE_					0	0	0			REV__nc|ENSG00000196091|Q00872-2|MYBPC1	REV__nc|ENSG00000196091|Q00872-2|MYBPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.5540771484375	3	416.878815	1247.61462	0.16117	6.7189E-05	0.39537	0.00016482	0.55654	0.00023201	416.8788941876493	29.452	0.35945	29.452	29.273	29.633	0					20	12	2	0	0	0	0.31889	1	5284	5284		3.3196	0.88486	1	83871	+		53086	18614	30416	30417	64945	64945					0.0007129032117063616
VLVASPETVT	10	Unmodified	_VLVASPETVT_					0	0	0			REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.30023193359375	2	508.28714	1014.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.028	1	60.028	59.528	60.528	0								0	0	0	0.34994	1	14654	14654		14.838	2.3067	1		+		53087	14456	30417	30418	64946	64946					0.05302903520566815
VLVFFKRKP	9	Unmodified	_VLVFFKRKP_					0	0	0			REV__ENST00000468388.5_1_1:26799103-26800010:+|nuORF	REV__ENST00000468388.5_1_1:26799103-26800010:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3642578125	2	567.363319	1132.71209	0.60161	0.00034133	0.92653	0.00052568	1.5281	0.00086701	567.3636630012569	40.208	0.51125	40.3	40.02	40.531	0.09267					49	17	4	0	0	0	0.32733	1	8571	8571		4.756	2.4533	1	806540	+		53088	21325	30418	30419	64947	64947					0.1510376877863564
VLVFFKRKP	9	Unmodified	_VLVFFKRKP_					0	0	0			REV__ENST00000468388.5_1_1:26799103-26800010:+|nuORF	REV__ENST00000468388.5_1_1:26799103-26800010:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	567.363319	1132.71209	0.45593	0.00025868	1.0379	0.00058885	1.4938	0.00084753	567.3637781157477	40.391	0.55589	40.391	40.078	40.634	0	0.062733	5.9514E-05	NaN	4.756	53	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	799190	+		53089	21325	30418	30419							0.1510376877863564
VLVFFKRKP	9	Unmodified	_VLVFFKRKP_					0	0	0			REV__ENST00000468388.5_1_1:26799103-26800010:+|nuORF	REV__ENST00000468388.5_1_1:26799103-26800010:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	567.363319	1132.71209	0.60161	0.00034133	0.92653	0.00052568	1.5281	0.00086701	567.3636630012569	40.208	0.51125	40.3	40.02	40.531	0.09267	-0.028339	-6.6828E-05	NaN	4.756	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	806540	+		53090	21325	30418	30419							0.1510376877863564
VLVFFKRKP	9	Unmodified	_VLVFFKRKP_					0	0	0			REV__ENST00000468388.5_1_1:26799103-26800010:+|nuORF	REV__ENST00000468388.5_1_1:26799103-26800010:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	567.363319	1132.71209	0.39649	0.00022495	0.96596	0.00054805	1.3624	0.000773	567.3637432509554	40.195	0.46947	40.294	40.01	40.479	0.099407	-0.034394	-2.208E-05	NaN	4.756	43	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	731080	+		53091	21325	30418	30419							0.1510376877863564
VLVFLHMIL	9	Unmodified	_VLVFLHMIL_					0	0	0			REV__ENST00000468476.1_1_1:40026750-40026849:-|nuORF	REV__ENST00000468476.1_1_1:40026750-40026849:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2667846679688	2	542.833006	1083.65146	0.54339	0.00029497	2.512	0.0013636	3.0554	0.0016586	542.8345061440339	62.676	0.29368	62.676	62.424	62.718	0					14	10	2	0	0	0	0.25291	1	15457	15457		9.3474	0.75416	1	165000	+		53092	21328	30419	30420	64948	64948					0.11297915404043124
VLVFLHMIL	9	Unmodified	_VLVFLHMIL_					0	0	0			REV__ENST00000468476.1_1_1:40026750-40026849:-|nuORF	REV__ENST00000468476.1_1_1:40026750-40026849:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2666625976562	2	542.833006	1083.65146	0.62809	0.00034095	1.461	0.00079305	2.089	0.001134	542.8337243715358	62.48	0.29474	62.577	62.471	62.765	0.096985					16	10	2	0	0	0	0.22431	1	15406	15406		20.871	11.524	1	168640	+		53093	21328	30419	30420	64949	64949					0.11297915404043124
VLVGHHSLI	9	Unmodified	_VLVGHHSLI_					0	0	0			REV__DPP6|p.R457Ifs*40|1|0.07|ENSG00000130226|chr7:154801422-154801423|-/AATT|frameshift_variant	REV__DPP6|p.R457Ifs*40|1|0.07|ENSG00000130226|chr7:154801422-154801423|-/AATT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.80029296875	2	487.792727	973.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.909	1	87.909	87.409	88.409	0								0	0	0	0.23367	1	23199	23199		11.64	0.81637	1		+		53094	13304	30420	30421	64950	64950					0.08305770405377189
VLVHGWKYSRR	11	Unmodified	_VLVHGWKYSRR_					0	0	0		ENST00000314138.10_1_11:8710898-8710934:+|nuORF	ENST00000314138.10_1_11:8710898-8710934:+|nuORF	ENST00000314138.10_1_11:8710898-8710934:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.71514892578125	3	467.601839	1399.78369	-0.094947	-4.4398E-05	4.0163	0.001878	3.9213	0.0018336	467.6035864139105	18.206	0.24812	18.206	18.051	18.299	0					13	8	3	0	0	0	0.33334	1	1888	1888		1.2148	0.588	1	32656			53095	9341	30421	30422	64951	64951					0.09978656465182212
VLVIQKRH	8	Unmodified	_VLVIQKRH_					0	0	0		ENSG00000176381|ENST00000322583|PRR18	ENSG00000176381|ENST00000322583|PRR18	ENSG00000176381|ENST00000322583|PRR18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2838134765625	2	496.821818	991.629084	0.57969	0.000288	-0.5762	-0.00028627	0.0034823	1.7301E-06	496.821573977416	43.328	0.27081	43.406	43.182	43.453	0.077518					14	9	2	0	0	0	0.34319	1	9446	9446		5.7604	0	1	135020			53096	6921	30422	30423	64952	64952					0.13293452050641008
VLVLKQFLLQR	11	Unmodified	_VLVLKQFLLQR_					0	0	0		ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B;nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B	ENST00000562717.1_1_16:50188117-50258568:+|nuORF	ENST00000562717.1_1_16:50188117-50258568:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.9330139160156	3	452.962374	1355.86529	0.24952	0.00011302	0.75066	0.00034002	1.0002	0.00045305	453.29705814601823	33.546	0.44361	33.546	33.31	33.753	0					31	15	3	0	0	0	0.33347	1	6551	6551		0.08335	0	1	105040			53097	2993	30423	30424	64953	64953					0.2015933910442982
VLVLLVCVF	9	Unmodified	_VLVLLVCVF_					0	0	0		ENSG00000143473|ENST00000271751|KCNH1;nc|ENSG00000143473|O95259-2|KCNH1;ENST00000394964.3_1_14:63416779-63568536:-|nuORF;nc|ENSG00000140015|Q8NCM2-2|KCNH5;nc|ENSG00000140015|Q8NCM2-3|KCNH5;KCNH5|p.W811Sfs*15|1|0.05|ENSG00000140015|chr14:62708043-62708044|-/CAATAAGAATGAAGAATGGAAATGG|frameshift_variant;ENSG00000140015|ENST00000322893|KCNH5	ENSG00000143473|ENST00000271751|KCNH1;ENSG00000140015|ENST00000322893|KCNH5	ENSG00000143473|ENST00000271751|KCNH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2644958496094	2	502.814282	1003.61401	0.49615	0.00024947	-0.52119	-0.00026206	-0.025036	-1.2588E-05	502.81391835489893	87.845	0.31203	87.845	87.765	88.077	0					20	14	2	0	0	0	0.25811	1	23236	23236		5.2307	5.2307	1	151930			53098	4518;4277	30424	30425	64954	64954					0.11234824138432487
VLVLPMVL	8	Unmodified	_VLVLPMVL_					0	0	0		nc|ENSG00000249730|P0C629|OR10J4	nc|ENSG00000249730|P0C629|OR10J4	nc|ENSG00000249730|P0C629|OR10J4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.3009033203125	2	442.2879	882.561247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.31	1	116.31	115.81	116.81	0								0	0	0	0.37992	1	30115	30115		0.79363	0	1				53099	12973	30425	30426	64955	64955					0.11526866075644193
VLVQYASHG	9	Unmodified	_VLVQYASHG_					0	0	0			REV__ENSG00000164070|ENST00000296464|HSPA4L	REV__ENSG00000164070|ENST00000296464|HSPA4L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7794494628906	2	487.258717	972.50288	0.4791	0.00023344	-0.18837	-9.1783E-05	0.29073	0.00014166	487.25870373487516	37.851	0.60995	37.851	37.397	38.007	0					28	21	2	0	0	0	0.25066	1	7703	7703		11.64	1.4569	1	147150	+		53100	17122	30426	30427	64956	64956					0.015529007547115725
VLVQYASHG	9	Unmodified	_VLVQYASHG_					0	0	0			REV__ENSG00000164070|ENST00000296464|HSPA4L	REV__ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	487.258717	972.50288	0.30017	0.00014626	0.34482	0.00016802	0.64499	0.00031428	487.2587426223075	37.685	0.89768	37.782	37.252	38.15	0.097527	-0.070799	0.00036674	NaN	11.64	40	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137320	+		53101	17122	30426	30427							0.015529007547115725
VLVRGLVL	8	Unmodified	_VLVRGLVL_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.802490234375	2	434.802563	867.590573	-0.026614	-1.1572E-05	0.054482	2.3689E-05	0.027868	1.2117E-05	434.8024948603589	58.716	1.095	58.716	58.413	59.508	0					70	37	3	0	0	0	0.2705	1	14224	14224		34.187	0	1	1039000			53102	1941	30427	30428	64957	64957					0.15148146416129293
VLVRGLVL	8	Unmodified	_VLVRGLVL_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8024597167969	2	434.802563	867.590573	-0.094317	-4.1009E-05	0.12797	5.5642E-05	0.033653	1.4632E-05	434.80254107743997	62.168	0.82861	62.168	61.86	62.689	0					47	30	2	0	0	0	0.2705	1	15298	15298		34.187	0	1	520340			53103	1941	30427	30428	64958	64958					0.15148146416129293
VLVRGLVL	8	Unmodified	_VLVRGLVL_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.8024597167969	2	434.802563	867.590573	0.048471	2.1075E-05	0.039631	1.7232E-05	0.088102	3.8307E-05	434.80245067066323	58.616	0.84457	58.708	58.418	59.262	0.091301					62	29	3	0	0	0	0.2705	2	14228	14178;14228		34.187	0	1	906590			53104	1941	30427	30428	64959;64960	64960					0.15148146416129293
VLVRGLVL	8	Unmodified	_VLVRGLVL_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.80230712890625	2	434.802563	867.590573	0.14422	6.2707E-05	-0.22369	-9.7259E-05	-0.079468	-3.4553E-05	434.80239267214927	58.709	0.80579	58.694	58.416	59.222	-0.014267					55	28	3	0	0	0	0.2705	1	14206	14206		34.187	0	1	1144700			53105	1941	30427	30428	64961	64961					0.15148146416129293
VLVRGLVL	8	Unmodified	_VLVRGLVL_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	434.802563	867.590573	-0.225	-9.7831E-05	0.37868	0.00016465	0.15368	6.6818E-05	434.8026318804624	62.057	0.65414	62.154	61.867	62.521	0.096985	0.0089284	0.00012675	NaN	34.187	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	603140			53106	1941	30427	30428							0.15148146416129293
VLVRGLVL	8	Unmodified	_VLVRGLVL_					0	0	0		nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	nc|ENSG00000104973|Q71SY5-5|MED25	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	434.802563	867.590573	-0.15123	-6.5757E-05	0.23702	0.00010306	0.085788	3.7301E-05	434.80256466056966	62.121	0.78591	62.113	61.811	62.597	-0.0085526	-0.031945	3.5684E-06	NaN	34.187	51	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	567570			53107	1941	30427	30428							0.15148146416129293
VLVRGVLI	8	Unmodified	_VLVRGVLI_					0	0	0			REV__ENST00000489377.1_1_9:103207326-103207509:+|nuORF	REV__ENST00000489377.1_1_9:103207326-103207509:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.80242919921875	2	434.802563	867.590573	-0.225	-9.7831E-05	0.37868	0.00016465	0.15368	6.6818E-05	434.8026318804624	62.057	0.65414	62.154	61.867	62.521	0.096985					49	23	3	0	0	0	0.33916	2	15294	15243;15294		26.341	0	1	603140	+		53108	21591	30428	30429	64962;64963	64963					0.15148146416129293
VLVRGVLI	8	Unmodified	_VLVRGVLI_					0	0	0			REV__ENST00000489377.1_1_9:103207326-103207509:+|nuORF	REV__ENST00000489377.1_1_9:103207326-103207509:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8025207519531	2	434.802563	867.590573	-0.15123	-6.5757E-05	0.23702	0.00010306	0.085788	3.7301E-05	434.80256466056966	62.121	0.78591	62.113	61.811	62.597	-0.0085526					51	28	3	0	0	0	0.33916	2	15314	15262;15314		26.341	0	1	567570	+		53109	21591	30428	30429	64964;64965	64965					0.15148146416129293
VLVRLHPTL	9	Unmodified	_VLVRLHPTL_					0	0	0			REV__ENST00000311413.4_1_11:119207130-119207223:+|nuORF	REV__ENST00000311413.4_1_11:119207130-119207223:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3192749023438	2	524.337301	1046.66005	0.48533	0.00025447	-0.00272	-1.4262E-06	0.48261	0.00025305	524.3371644104473	43.253	0.59426	43.253	42.982	43.576	0					49	21	4	0	0	0	0.23007	1	9558	9558		19.257	3.4098	1	986270	+		53110	19900	30429	30430	64966	64966					0.1385860536488508
VLVSVETPI	9	Unmodified	_VLVSVETPI_					0	0	0			REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.79400634765625	2	478.786776	955.558998	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.114	1	83.114	82.614	83.614	0								0	0	0	0.23091	1	21729	21729		12.532	0	1		+		53111	15928	30430	30431	64967	64967					0.0794410887151571
VLVVLLVV	8	Unmodified	_VLVVLLVV_					0	0	0		ENST00000429162.2_1_15:44581227-44599615:+|nuORF;nc|ENSG00000166734|Q6P4E1-3|GOLM2;nc|ENSG00000166734|Q6P4E1-2|GOLM2;ENSG00000166734|ENST00000299957|GOLM2	ENST00000429162.2_1_15:44581227-44599615:+|nuORF	ENST00000429162.2_1_15:44581227-44599615:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.302490234375	2	427.30969	852.604826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.872	1	63.965	63.465	64.465	0.09288								0	0	0	0.35779	1	15837	15837		11.114	0	1				53112	6105	30431	30432	64968	64968					0.17262798844421923
VLVYQGIPK	9	Unmodified	_VLVYQGIPK_					0	0	0		ENST00000357776.6_2_17:42977098-42978910:+|nuORF	ENST00000357776.6_2_17:42977098-42978910:+|nuORF	ENST00000357776.6_2_17:42977098-42978910:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.3005065917969	2	508.810585	1015.60662	0.31102	0.00015825	0.21371	0.00010874	0.52473	0.00026699	508.8106103110847	58.893	0.95472	58.984	58.645	59.6	0.091305					66	33	3	0	0	0	0.22596	1	14345	14345		21.747	2.4897	1	966210			53113	9638	30432	30433	64969	64969					0.09943807862373433
VLWACLKTF	9	Unmodified	_VLWACLKTF_					0	0	0			REV__ENST00000498340.5_1_2:33812358-33824321:-|nuORF	REV__ENST00000498340.5_1_2:33812358-33824321:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2838134765625	2	540.799163	1079.58377	0.35963	0.00019449	1.5352	0.00083024	1.8948	0.0010247	540.8008476150685	73.248	0.32912	73.302	73.118	73.447	0.053833					18	11	2	0	0	0	0.24311	1	18648	18648		16.942	5.302	1	132520	+		53114	15061	30433	30434	64970	64970					0.047164654732569034
VLWIWLLF	8	Unmodified	_VLWIWLLF_					0	0	0			REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3169555664062	2	545.328414	1088.64227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.407	1	84.407	83.907	84.907	0								0	0	0	0.3683	1	22125	22125		6.3541	0	1		+		53115	15062	30434	30435	64971	64971					0.10149890110028537
VLWIWLLF	8	Unmodified	_VLWIWLLF_					0	0	0			REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3167114257812	2	545.328414	1088.64227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.804	1	92.804	92.304	93.304	0								0	0	0	0.35779	1	24697	24697		11.114	0.93107	1		+		53116	15062	30434	30435	64972	64972					0.10149890110028537
VLWIWLLF	8	Unmodified	_VLWIWLLF_					0	0	0			REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.316650390625	2	545.328414	1088.64227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.964	1	92.964	92.464	93.464	0								0	0	0	0.3683	1	24745	24745		6.3541	1.1234	1		+		53117	15062	30434	30435	64973	64973					0.10149890110028537
VLWIWLLF	8	Unmodified	_VLWIWLLF_					0	0	0			REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3170776367188	2	545.328414	1088.64227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.167	1	93.167	92.667	93.667	0								0	0	0	0.3683	1	24806	24806		6.3541	1.1234	1		+		53118	15062	30434	30435	64974	64974					0.10149890110028537
VLWIWLLF	8	Unmodified	_VLWIWLLF_					0	0	0			REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.316650390625	2	545.328414	1088.64227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.21	1	93.21	92.71	93.71	0								0	0	0	0.3683	1	24819	24819		6.3541	1.5981	1		+		53119	15062	30434	30435	64975	64975					0.10149890110028537
VLWIWLLF	8	Unmodified	_VLWIWLLF_					0	0	0			REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3173828125	2	545.328414	1088.64227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.94	1	115.94	115.44	116.44	0								0	0	0	0.37595	1	30034	30034		2.8892	0.82947	1		+		53120	15062	30434	30435	64976	64976					0.10149890110028537
VLWLFLSFF	9	Unmodified	_VLWLFLSFF_					0	0	0		ENST00000313350.10_2_3:33686887-33686953:-|nuORF	ENST00000313350.10_2_3:33686887-33686953:-|nuORF	ENST00000313350.10_2_3:33686887-33686953:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.7799682617188	2	586.331153	1170.64775	-0.0080151	-4.6995E-06	-0.48465	-0.00028416	-0.49266	-0.00028886	586.3309595714596	12.709	0.25673	12.709	12.526	12.783	0					13	8	3	0	0	0	0.25938	1	212	212		4.3292	0.73274	1	28166			53121	9332	30435	30436	64977	64977					0.06925568901851875
VLWLFLSFF	9	Unmodified	_VLWLFLSFF_					0	0	0		ENST00000313350.10_2_3:33686887-33686953:-|nuORF	ENST00000313350.10_2_3:33686887-33686953:-|nuORF	ENST00000313350.10_2_3:33686887-33686953:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.7799682617188	2	586.331153	1170.64775	-0.079647	-4.67E-05	-0.0097684	-5.7275E-06	-0.089416	-5.2427E-05	586.3314802552434	12.776	0.18583	12.708	12.548	12.734	-0.067496					9	5	2	0	0	0	0.25938	1	225	225		4.3292	0.38484	1	26401			53122	9332	30435	30436	64978	64978					0.06925568901851875
VLWRRRKW	8	Unmodified	_VLWRRRKW_					0	0	0		nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1;SYNJ1|p.P1238Lfs*21|1|0.29|ENSG00000159082|chr21:32639774-32639774|A/-|frameshift_variant	nc|ENSG00000159082|O43426-4|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	400.5806579589844	3	400.580598	1198.71996	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.01	1	103.01	102.51	103.51	0.0082703								0	0	0	0.36748	1	27388	27388		6.7232	3.6509	1				53123	5386	30436	30437	64979	64979					0.12855340818759942
VLWRVAILLVS	11	Unmodified	_VLWRVAILLVS_					0	0	0			REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3778076171875	2	634.908091	1267.80163	0.25107	0.00015941	1.7175	0.0010904	1.9685	0.0012498	635.4101072561906	103.15	0.14391	103.16	103.1	103.24	0.0082703					33	21	2	0	0	0	0.33238	1	27415	27415		1.3295	0.92882	1	8781400	+		53124	23101	30437	30438	64980	64980					0.17843978667360716
VLWRVAILLVS	11	Unmodified	_VLWRVAILLVS_					0	0	0			REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3775024414062	2	634.908091	1267.80163	0.4882	0.00030996	-0.13752	-8.7314E-05	0.35068	0.00022265	634.9086162327128	103.78	0.6597	103.78	103.6	104.26	-0.0011139					181	90	3	0	0	0	0.33238	1	27683	27683		3.2813	3.2813	1	7378100	+		53125	23101	30437	30438	64981	64981					0.17843978667360716
VLWRVAILLVS	11	Unmodified	_VLWRVAILLVS_					0	0	0			REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	REV__nc|ENSG00000176915|Q86XL3-2|ANKLE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.8782958984375	2	634.908091	1267.80163	0.48358	0.00030703	0.44444	0.00028218	0.92802	0.00058921	634.9087424264051	103.18	0.50099	103.18	102.91	103.41	-0.0011139					117	67	2	0	0	0	0.329	1	27485	27485		5.7319	0	1	6783800	+		53126	23101	30437	30438	64982	64982					0.17843978667360716
VLWVGWNA	8	Unmodified	_VLWVGWNA_					0	0	0		ENST00000533581.1_1_1:31658018-31661124:-|nuORF;ENSG00000084628|ENST00000373736|NKAIN1	ENST00000533581.1_1_1:31658018-31661124:-|nuORF	ENST00000533581.1_1_1:31658018-31661124:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2703552246094	2	472.75307	943.491587	-0.16227	-7.6715E-05	-2.231	-0.0010547	-2.3932	-0.0011314	472.7519899922544	13.487	0.27494	13.387	13.217	13.492	-0.09929					13	9	2	0	0	0	0.34297	1	417	417		6.3541	0	1	28761			53127	1242	30438	30439	64983	64983					0.017581234512249466
VLYACFILGRL	11	Unmodified	_VLYACFILGRL_					0	0	0		nc|ENSG00000167780|O75908-3|SOAT2;SOAT2|p.V448Sfs*3|1|0.21|ENSG00000167780|chr12:53123182-53123182|T/-|frameshift_variant;nc|ENSG00000167780|O75908-2|SOAT2;ENSG00000167780|ENST00000301466|SOAT2	nc|ENSG00000167780|O75908-3|SOAT2	nc|ENSG00000167780|O75908-3|SOAT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.2455749511719	3	423.245893	1266.71585	-0.039495	-1.6716E-05	-0.45378	-0.00019206	-0.49327	-0.00020878	423.245795284768	24.245	0.56873	24.206	23.939	24.507	-0.038927					43	19	3	0	0	0	0.44966	1	3711	3711		4.7159	0.87001	1	215190			53128	6210	30439	30440	64984	64984					0.09316070490217498
VLYFTEKRR	9	Unmodified	_VLYFTEKRR_					0	0	0		ENST00000322038.5_2_18:72922772-72923027:+|nuORF	ENST00000322038.5_2_18:72922772-72923027:+|nuORF	ENST00000322038.5_2_18:72922772-72923027:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3702392578125	2	606.348397	1210.68224	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.55	1	118.57	118.07	119.07	0.026253								0	0	0	0.2672	1	30695	30695		0.52476	0.066424	1				53129	9385	30440	30441	64985	64985					0.08532785042643809
VLYGKRKPI	9	Unmodified	_VLYGKRKPI_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;ZFHX3|p.V2783Afs*6|1|0.37|ENSG00000140836|chr16:72794330-72794334|GGGGA/-|frameshift_variant	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.790771484375	2	537.345126	1072.6757	0.11487	6.1727E-05	0.13085	7.031E-05	0.24572	0.00013204	537.3453758150713	27.525	0.39902	27.503	27.321	27.72	-0.021412					23	13	2	0	0	0	0.26117	1	4638	4638		2.3027	0	1	116120			53130	4338	30441	30442	64986	64986					0.14226891881935444
VLYGKRKPI	9	Unmodified	_VLYGKRKPI_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;ZFHX3|p.V2783Afs*6|1|0.37|ENSG00000140836|chr16:72794330-72794334|GGGGA/-|frameshift_variant	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	537.345126	1072.6757	0.25889	0.00013911	-0.17995	-9.6693E-05	0.078943	4.242E-05	537.3449770158037	27.541	0.46011	27.541	27.354	27.814	0	0.02188	-8.1934E-05	NaN	2.3027	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139970			53131	4338	30441	30442							0.14226891881935444
VLYGKRKPI	9	Unmodified	_VLYGKRKPI_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;ZFHX3|p.V2783Afs*6|1|0.37|ENSG00000140836|chr16:72794330-72794334|GGGGA/-|frameshift_variant	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	537.345126	1072.6757	0.2037	0.00010946	-0.13304	-7.149E-05	0.070658	3.7968E-05	537.3449213902034	27.524	0.40753	27.512	27.344	27.752	-0.01156	-0.0064839	-3.1528E-05	NaN	2.3027	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153710			53132	4338	30441	30442							0.14226891881935444
VLYGVHVL	8	Unmodified	_VLYGVHVL_					0	0	0			REV__ENSG00000141622|ENST00000269439|RNF165	REV__ENSG00000141622|ENST00000269439|RNF165	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7538146972656	2	450.271096	898.527639	0.41094	0.00018504	-1.101	-0.00049575	-0.69005	-0.00031071	450.26916173919506	85.1	1.7673	85.1	84.163	85.931	0					127	67	3	0	0	0	0.34297	1	22059	22059		2.8892	0	1	435070	+		53133	16087	30442	30443	64987	64987					0.07431580628076517
VLYHLPYK	8	Unmodified	_VLYHLPYK_					0	0	0			REV__ENSG00000198720|ENST00000394859|ANKRD13B	REV__ENSG00000198720|ENST00000394859|ANKRD13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.255859375	2	516.797478	1031.5804	0.66792	0.00034518	-0.40628	-0.00020997	0.26163	0.00013521	516.7973942849901	48.334	0.32034	48.382	48.204	48.524	0.04752					16	10	2	0	0	0	0.34218	1	10997	10997		2.3027	0	1	194050	+		53134	18849	30443	30444	64988	64988					0.06587538690882866
VLYKIKLCLD	10	Unmodified	_VLYKIKLCLD_					0	0	0			REV__ENST00000467280.1_1_21:15985184-15988318:-|nuORF	REV__ENST00000467280.1_1_21:15985184-15988318:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.359375	2	604.359585	1206.70462	0.50039	0.00030241	-1.525	-0.00092166	-1.0246	-0.00061924	604.3582948395591	91.263	0.36226	91.263	91.139	91.502	0.00046539					45	24	3	0	0	0	0.40992	1	24252	24252		1.6526	0	1	443360	+		53135	21296	30444	30445	64989	64989					0.10953248396049275
VLYLDYSF	8	Unmodified	_VLYLDYSF_					0	0	0			REV__ENSG00000105464|ENST00000263269|GRIN2D	REV__ENSG00000105464|ENST00000263269|GRIN2D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7877197265625	2	510.257851	1018.50115	0.13803	7.0431E-05	-2.2996	-0.0011734	-2.1615	-0.0011029	510.25671851370595	23.528	0.69302	23.528	23.25	23.943	0					33	23	2	0	0	0	0.32778	1	3457	3457		20.871	6.2895	1	87792	+		53136	14459	30445	30446	64990	64990					-0.007361530539014893
VLYLTKETEI	10	Unmodified	_VLYLTKETEI_					0	0	0			REV__nc|ENSG00000072518|Q7KZI7-4|MARK2;REV__ENSG00000007047|ENST00000262891|MARK4	REV__ENSG00000007047|ENST00000262891|MARK4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.8284912109375	2	604.842279	1207.67001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.933	1	13.828	13.328	14.328	-0.10466								0	0	0	0.38023	1	575	575		0	0	1		+		53137	13762;13379	30446	30447	64991	64991					0.07447703788966464
VLYLTKETEI	10	Unmodified	_VLYLTKETEI_					0	0	0			REV__nc|ENSG00000072518|Q7KZI7-4|MARK2;REV__ENSG00000007047|ENST00000262891|MARK4	REV__ENSG00000007047|ENST00000262891|MARK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.5545654296875	3	403.563945	1207.67001	-0.48005	-0.00019373	-1.9648	-0.00079291	-2.4448	-0.00098664	403.5632845791827	13.929	0.34531	13.863	13.632	13.977	-0.066068					17	11	2	0	0	0	0.38522	1	569	569		6.1918	0	1	35435	+		53138	13762;13379	30446	30447	64992	64992					0.07447703788966464
VLYLWSLF	8	Unmodified	_VLYLWSLF_					0	0	0			REV__ENST00000425394.6_1_12:56711247-56712050:-|nuORF	REV__ENST00000425394.6_1_12:56711247-56712050:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2762451171875	2	520.794404	1039.57425	0.33597	0.00017497	0.74811	0.00038961	1.0841	0.00056458	520.7946725837329	76.445	2.8459	76.498	75.619	78.465	0.053421					158	102	3	0	0	0	0.34046	1	19826	19826		5.2307	0	1	842980	+		53139	20895	30447	30448	64993	64993					0.0560502045937028
VLYQQHPF	8	Unmodified	_VLYQQHPF_					0	0	0			REV__ENST00000278559.7_1_11:76835214-76835421:+|nuORF	REV__ENST00000278559.7_1_11:76835214-76835421:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.3016357421875	2	516.269084	1030.52362	0.53863	0.00027808	0.62259	0.00032142	1.1612	0.0005995	516.2695492334041	50.893	0.94006	50.903	50.593	51.533	0.0095673					115	35	4	0	0	0	0.30749	1	11984	11984		28.173	3.4993	1	1946200	+		53140	19702	30448	30449	64994	64994					0.009574911343861459
VLYQQHPF	8	Unmodified	_VLYQQHPF_					0	0	0			REV__ENST00000278559.7_1_11:76835214-76835421:+|nuORF	REV__ENST00000278559.7_1_11:76835214-76835421:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	516.269084	1030.52362	0.71757	0.00037046	0.44811	0.00023135	1.1657	0.00060181	516.2694553335407	50.846	0.83627	50.846	50.518	51.354	0	-0.015028	-0.00010386	NaN	28.173	88	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1976900	+		53141	19702	30448	30449							0.009574911343861459
VLYQQHPF	8	Unmodified	_VLYQQHPF_					0	0	0			REV__ENST00000278559.7_1_11:76835214-76835421:+|nuORF	REV__ENST00000278559.7_1_11:76835214-76835421:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	516.269084	1030.52362	0.5368	0.00027714	0.60999	0.00031492	1.1468	0.00059205	516.269495890302	50.788	1.0174	50.835	50.577	51.595	0.046574	-0.026433	6.3285E-05	NaN	28.173	97	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1943600	+		53142	19702	30448	30449							0.009574911343861459
VLYVTFCH	8	Unmodified	_VLYVTFCH_					0	0	0			REV__ENSG00000180269|ENST00000570682|GPR139	REV__ENSG00000180269|ENST00000570682|GPR139	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2720642089844	2	491.246763	980.478974	0.20042	9.8456E-05	2.2719	0.0011161	2.4723	0.0012145	491.24818606049223	33.864	0.14127	33.93	33.879	34.021	0.0667					6	4	2	0	0	0	0.34147	1	6612	6612		6.3541	0	1	64604	+		53143	18106	30449	30450	64995	64995					-0.012046560033240894
VMAPRALLL	9	Oxidation (M)	_VM(Oxidation (M))APRALLL_		VM(1)APRALLL		VM(44)APRALLL	0	0	1		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.3047180175781	2	500.304613	998.594672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.958	1	53.958	53.458	54.458	0								0	0	0	0.11063	1	12780	12780		43.858	14.777	1				53144	8234	30450	30451	64996	64996		891			0.09531867847556441
VMAPRALLL	9	Oxidation (M)	_VM(Oxidation (M))APRALLL_		VM(1)APRALLL		VM(71)APRALLL	0	0	1		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.3048400878906	2	500.304613	998.594672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.129	1	54.129	53.629	54.629	0								0	0	0	0.016116	1	12832	12832		71.134	37.031	1				53145	8234	30450	30451	64997	64997		891			0.09531867847556441
VMAPRALLL	9	Oxidation (M)	_VM(Oxidation (M))APRALLL_		VM(1)APRALLL		VM(52)APRALLL	0	0	1		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.30487060546875	2	500.304613	998.594672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.929	1	53.985	53.485	54.485	0.056255								0	0	0	0.078733	1	12770	12770		52.268	18.166	1				53146	8234	30450	30451	64998	64998		891			0.09531867847556441
VMAPRALLL	9	Oxidation (M)	_VM(Oxidation (M))APRALLL_		VM(1)APRALLL		VM(61)APRALLL	0	0	1		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.3047790527344	2	500.304613	998.594672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.074	1	54.137	53.637	54.637	0.063202								0	0	0	0.048469	1	12815	12815		61.357	27.255	1				53147	8234	30450	30451	64999	64999		891			0.09531867847556441
VMAPRALLL	9	Oxidation (M)	_VM(Oxidation (M))APRALLL_		VM(1)APRALLL		VM(44)APRALLL	0	0	1		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.30487060546875	2	500.304613	998.594672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.001	1	53.986	53.486	54.486	-0.015923								0	0	0	0.11063	1	12787	12787		43.858	14.777	1				53148	8234	30450	30451	65000	65000		891			0.09531867847556441
VMAPRALLL	9	Oxidation (M)	_VM(Oxidation (M))APRALLL_		VM(1)APRALLL		VM(61)APRALLL	0	0	1		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3047180175781	2	500.304613	998.594672	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.153	1	54.137	53.637	54.637	-0.015923								0	0	0	0.048469	1	12834	12834		61.357	27.255	1				53149	8234	30450	30451	65001	65001		891			0.09531867847556441
VMAPRTLLL	9	Oxidation (M)	_VM(Oxidation (M))APRTLLL_		VM(1)APRTLLL		VM(86)APRTLLL	0	0	1		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.3101806640625	2	515.309895	1028.60524	0.43582	0.00022458	0.04304	2.2179E-05	0.47886	0.00024676	515.3102340204904	53.274	2.15	53.274	52.767	54.917	0					255	79	7	0	0	0	0.0054984	5	12657	12473;12517;12559;12608;12657		86.332	36.778	1	38091000			53150	8321	30451	30452	65002;65003;65004;65005;65006	65006		899			0.0920785050197992
VMAPRTLLL	9	Oxidation (M)	_VM(Oxidation (M))APRTLLL_		VM(1)APRTLLL		VM(86)APRTLLL	0	0	1		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3103637695312	2	515.309895	1028.60524	0.4051	0.00020875	-0.050323	-2.5932E-05	0.35478	0.00018282	515.3102445062121	53.224	2.2361	53.281	52.746	54.982	0.056259					268	83	7	0	0	0	0.0054984	5	12513	12468;12513;12562;12611;12661		86.332	33.857	1	39894000			53151	8321	30451	30452	65007;65008;65009;65010;65011	65008		899			0.0920785050197992
VMAPRTLLL	9	Oxidation (M)	_VM(Oxidation (M))APRTLLL_		VM(1)APRTLLL		VM(77)APRTLLL	0	0	1		ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000463348.5_1_6:30227401-30227711:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	ENST00000496081.5_1_6:29910330-29912419:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.3104858398438	2	515.309895	1028.60524	0.28439	0.00014655	0.48854	0.00025175	0.77292	0.0003983	515.310380092728	53.288	2.5166	53.278	52.812	55.329	-0.0096054					251	92	5	0	0	0	0.011693	6	12571	12474;12520;12571;12617;12665;12717		76.825	29.23	1	42148000			53152	8321	30451	30452	65012;65013;65014;65015;65016;65017	65014		899			0.0920785050197992
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_		VM(1)APRTVLL		VM(77)APRTVLL	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3020935058594	2	508.30207	1014.58959	0.43138	0.00021927	-0.26521	-0.00013481	0.16616	8.4461E-05	508.30191447568404	48.766	1.7161	48.766	48.012	49.729	0					186	61	5	0	0	0	0.011693	3	11159	11106;11159;11209		76.825	31.125	1	12629000			53153	8488	30452	30453	65018;65019;65020	65019		909			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_		VM(1)APRTVLL		VM(89)APRTVLL	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.30206298828125	2	508.30207	1014.58959	0.33836	0.00017199	-0.92049	-0.00046789	-0.58213	-0.0002959	508.3017278361209	47.374	1.6088	47.427	46.737	48.346	0.052574					163	59	5	0	0	0	0.0046246	3	10774	10724;10774;10819		89.401	37.132	1	16546000			53154	8488	30452	30453	65021;65022;65023	65022		909			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_		VM(1)APRTVLL		VM(59)APRTVLL	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.3020935058594	2	508.30207	1014.58959	0.4522	0.00022985	-0.3226	-0.00016398	0.12959	6.5873E-05	508.30191466809714	48.786	1.6468	48.831	48.13	49.776	0.044891					197	60	5	0	0	0	0.032589	4	11143	11097;11143;11235;11283		59.368	24.322	1	13091000			53155	8488	30452	30453	65024;65025;65026;65027	65025		909			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_		VM(1)APRTVLL		VM(68)APRTVLL	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.30224609375	2	508.30207	1014.58959	0.26876	0.00013661	-0.1526	-7.7565E-05	0.11616	5.9046E-05	508.30200555035714	48.763	1.7043	48.795	48.054	49.758	0.032043					185	62	5	0	0	0	0.017549	4	11173	11083;11130;11173;11268		67.838	36.57	1	13445000			53156	8488	30452	30453	65028;65029;65030;65031	65030		909			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_					0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	508.30207	1014.58959	0.59448	0.00030218	-1.1447	-0.00058184	-0.5502	-0.00027967	508.30161708817377	47.371	1.4246	47.371	46.873	48.298	0	-0.042685	3.8805E-05	NaN	89.401	160	50	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14886000			53157	8488	30452	30453				909			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_					0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000434333.1_1_6:31324722-31324935:-|nuORF;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.30207	1014.58959	0.82497	0.00041933	-1.4087	-0.00071605	-0.58374	-0.00029672	508.3014910865665	47.388	1.086	47.442	46.827	47.913	0.054371	0.029104	-0.00022961	NaN	89.401	153	39	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16869000			53158	8488	30452	30453				909			0.08287563984924873
VMAVFLLTQM	10	Unmodified	_VMAVFLLTQM_					0	0	0		ENSG00000172215|ENST00000304552|CXCR6	ENSG00000172215|ENST00000304552|CXCR6	ENSG00000172215|ENST00000304552|CXCR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.354248046875	2	576.811413	1151.60827	-0.1136	-6.5525E-05	0.45619	0.00026314	0.34259	0.00019761	576.8119453433115	38.754	0.47054	38.754	38.488	38.958	0					25	16	2	0	0	0	0.31926	1	8062	8062		5.7319	0	1	275080			53159	6612	30453	30454	65032	65032					0.03853357564457838
VMCYLALML	9	Unmodified	_VMCYLALML_					0	0	0		ENST00000482975.6_2_2:70520113-70520242:-|nuORF	ENST00000482975.6_2_2:70520113-70520242:-|nuORF	ENST00000482975.6_2_2:70520113-70520242:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7435302734375	2	528.76816	1055.52177	0.60783	0.0003214	3.5699	0.0018877	4.1778	0.0022091	528.7702860605332	59.095	0.45186	59.08	59.005	59.456	-0.014267					22	15	2	0	0	0	0.22431	1	14368	14368		14.582	0	1	166360			53160	11056	30454	30455	65033	65033					-0.0037734526176791405
VMEALVLQLR	10	Unmodified	_VMEALVLQLR_					0	0	0			REV__ENST00000563969.5_1_16:67314567-67322708:+|nuORF	REV__ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.7923583984375	2	586.347009	1170.67946	0.31975	0.00018748	1.1834	0.00069386	1.5031	0.00088134	586.3476185170077	51.833	0.23952	51.833	51.729	51.969	0					9	8	2	0	0	0	0.31926	1	12132	12132		5.7319	0.43497	1	97131	+		53161	18624	30455	30456	65034	65034					0.10095193593474505
VMESYSVEFSL	11	Unmodified	_VMESYSVEFSL_					0	0	0			REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	645.7999877929688	2	645.799754	1289.58495	0.42423	0.00027397	-0.19347	-0.00012494	0.23077	0.00014903	645.7994518983138	81.82	0.71687	81.82	81.393	82.11	0					70	28	3	0	0	0	0.18241	2	21342	21342;21395		32.786	16.149	1	238110	+		53162	14010	30456	30457	65035;65036	65035					-0.0482540973914638
VMESYSVEFSL	11	Unmodified	_VMESYSVEFSL_					0	0	0			REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.3013916015625	2	645.799754	1289.58495	0.18334	0.0001184	-0.041956	-2.7095E-05	0.14138	9.1305E-05	645.7996267501948	81.685	0.76576	81.754	81.417	82.183	0.068993					77	33	3	0	0	0	0.30767	2	21329	21282;21329		21.537	12.259	1	297800	+		53163	14010	30456	30457	65037;65038	65038					-0.0482540973914638
VMESYSVEFSL	11	Unmodified	_VMESYSVEFSL_					0	0	0			REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	645.7994384765625	2	645.799754	1289.58495	0.40697	0.00026282	-0.20608	-0.00013309	0.2009	0.00012974	645.7993772022701	81.855	0.7149	81.831	81.395	82.11	-0.02404					68	30	3	0	0	0	0.25499	2	21319	21319;21374		26.268	15.248	1	260290	+		53164	14010	30456	30457	65039;65040	65039					-0.0482540973914638
VMESYSVEFSL	11	Unmodified	_VMESYSVEFSL_					0	0	0			REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	645.799754	1289.58495	0.42423	0.00027397	-0.19347	-0.00012494	0.23077	0.00014903	645.7994518983138	81.82	0.71687	81.82	81.393	82.11	0	0.018416	-7.9011E-05	NaN	32.786	70	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238110	+		53165	14010	30456	30457							-0.0482540973914638
VMESYSVEFSL	11	Unmodified	_VMESYSVEFSL_					0	0	0			REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	645.799754	1289.58495	0.18334	0.0001184	-0.041956	-2.7095E-05	0.14138	9.1305E-05	645.7996267501948	81.685	0.76576	81.754	81.417	82.183	0.068993	-0.047445	0.00011668	NaN	32.786	77	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297800	+		53166	14010	30456	30457							-0.0482540973914638
VMESYSVEFSL	11	Unmodified	_VMESYSVEFSL_					0	0	0			REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	645.799754	1289.58495	0.40697	0.00026282	-0.20608	-0.00013309	0.2009	0.00012974	645.7993772022701	81.855	0.7149	81.831	81.395	82.11	-0.02404	0.029029	-9.53E-05	NaN	32.786	68	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260290	+		53167	14010	30456	30457							-0.0482540973914638
VMFHPEAWI	9	Unmodified	_VMFHPEAWI_					0	0	0			REV__nc|ENSG00000189430|O76036-2|NCR1	REV__nc|ENSG00000189430|O76036-2|NCR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.2891235351562	2	565.278595	1128.54264	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.28	1	51.29	50.79	51.79	0.0095634								0	0	0	0.21726	1	11946	11946		16.942	1.0951	1		+		53168	18607	30457	30458	65041	65041					-0.016492955662215536
VMGHHWVIV	9	Unmodified	_VMGHHWVIV_					0	0	0			REV__ENST00000484231.1_1_3:100000595-100000643:+|nuORF	REV__ENST00000484231.1_1_3:100000595-100000643:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2884521484375	2	539.286754	1076.55896	0.39747	0.00021435	1.311	0.00070702	1.7085	0.00092137	539.287594744123	24.279	0.39585	24.279	24.058	24.454	0					28	13	3	0	0	0	0.26117	1	3715	3715		2.3027	0.24298	1	102370	+		53169	21530	30458	30459	65042	65042					0.02373830390524745
VMIVITLFV	9	Unmodified	_VMIVITLFV_					0	0	0			REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8195190429688	2	517.819564	1033.62458	0.45542	0.00023583	-0.39501	-0.00020455	0.06041	3.1281E-05	517.8192265856181	82.96	1.1742	82.94	82.569	83.743	-0.020576					133	47	5	0	0	0	0.32733	1	21727	21727		4.756	4.756	1	924110	+		53170	22880	30459	30460	65043	65043					0.10910806792867334
VMIVITLFV	9	Unmodified	_VMIVITLFV_					0	0	0			REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	517.819564	1033.62458	0.43747	0.00022653	-0.59678	-0.00030902	-0.15931	-8.2494E-05	517.8192297510487	82.866	1.2014	82.939	82.473	83.674	0.073097	-0.00033289	-0.00012158	NaN	4.756	122	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	936410	+		53171	22880	30459	30460							0.10910806792867334
VMIVLPNSP	9	Unmodified	_VMIVLPNSP_					0	0	0			REV__ENSG00000240403|ENST00000326321|KIR3DL2;REV__nc|ENSG00000189013|Q99706-5|KIR2DL4	REV__ENSG00000240403|ENST00000326321|KIR3DL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.3135070800781	2	485.275521	968.536489	-0.096489	-4.6824E-05	-2.6089	-0.001266	-2.7054	-0.0013128	485.27410508752394	13.146	0.71208	13.047	12.729	13.441	-0.09929					25	24	2	0	0	0	0.26117	1	347	347		2.3027	1.5091	1	27051	+		53172	19170;18591	30460	30461	65044	65044					0.0509618620224046
VMKIIACVQTL	11	Unmodified	_VMKIIACVQTL_					0	0	0		ENST00000282488.11_1_3:152182481-152182547:+|nuORF	ENST00000282488.11_1_3:152182481-152182547:+|nuORF	ENST00000282488.11_1_3:152182481-152182547:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.2434387207031	3	406.903139	1217.68759	-0.037992	-1.5459E-05	0.089777	3.653E-05	0.051785	2.1072E-05	406.90310756330047	44.103	0.87285	44.187	43.944	44.817	0.083996					58	31	3	0	0	0	0.32824	1	9728	9728		12.856	4.5695	1	808690			53173	9127	30461	30462	65045	65045					0.08745004518596033
VMKKPVQR	8	Unmodified	_VMKKPVQR_					0	0	0			REV__ZGRF1|p.D357Afs*7|1|0.03|ENSG00000138658|chr4:112618972-112618973|-/TCAATGAAAGCAGTAG|frameshift_variant	REV__ZGRF1|p.D357Afs*7|1|0.03|ENSG00000138658|chr4:112618972-112618973|-/TCAATGAAAGCAGTAG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8012390136719	2	493.302404	984.590256	0.30484	0.00015038	0.69662	0.00034364	1.0015	0.00049402	493.3027698709925	28.769	0.26779	28.765	28.599	28.867	-0.0042572					11	8	2	0	0	0	0.34353	1	5082	5082		4.756	4.756	1	99818	+		53174	15941	30462	30463	65046	65046					0.09734403424624816
VMLWDLSCSI	10	Unmodified	_VMLWDLSCSI_					0	0	0			REV__ENSG00000149507|ENST00000278855|OOSP2	REV__ENSG00000149507|ENST00000278855|OOSP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3021240234375	2	583.782853	1165.55115	0.35266	0.00020587	-3.2493	-0.0018969	-2.8966	-0.001691	583.7808066126076	34.224	0.55628	34.224	33.916	34.472	0					29	19	2	0	0	0	0.32123	1	6786	6786		1.6526	0.17072	1	163200	+		53175	16472	30463	30464	65047	65047					-0.0250010971192296
VMLYLHCRD	9	Unmodified	_VMLYLHCRD_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.318603515625	2	575.280812	1148.54707	0.3143	0.00018081	0.89646	0.00051572	1.2108	0.00069653	575.7832887627748	56.823	0.35254	56.823	56.633	56.986	0					24	12	3	0	0	0	0.25202	1	13697	13697		10.824	4.6181	1	139550	+		53176	13615	30464	30465	65048	65048					-0.021261544149865585
VMLYLHCRD	9	Unmodified	_VMLYLHCRD_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	575.280812	1148.54707	0.54464	0.00031332	0.88088	0.00050675	1.4255	0.00082007	575.7832159789345	56.965	0.22383	56.945	56.78	57.004	-0.019081	0.060978	-9.5736E-06	NaN	10.824	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388220	+		53177	13615	30464	30465							-0.021261544149865585
VMPEVSWQL	9	Oxidation (M)	_VM(Oxidation (M))PEVSWQL_		VM(1)PEVSWQL		VM(100)PEVSWQL	0	0	1		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;UGT1A8|p.Y136Ifs*8|1|0.41|ENSG00000242366|chr2:233618110-233618111|-/A|frameshift_variant;UGT1A8|p.F150Pfs*9|1|0.04|ENSG00000242366|chr2:233618154-233618155|-/CCAGAGTG|frameshift_variant;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7736206054688	2	552.773342	1103.53213	0.28035	0.00015497	0.40108	0.00022171	0.68144	0.00037668	552.7736209380632	69.182	1.0281	69.182	68.841	69.869	0					98	36	4	0	0	0	0.0028626	3	17458	17414;17458;17507		103.35	63.396	1	2210600			53178	8529;12963;8544;8548	30465	30466	65049;65050;65051	65050		911			-0.01549323011317938
VMPEVSWQL	9	Oxidation (M)	_VM(Oxidation (M))PEVSWQL_		VM(1)PEVSWQL		VM(100)PEVSWQL	0	0	1		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;UGT1A8|p.Y136Ifs*8|1|0.41|ENSG00000242366|chr2:233618110-233618111|-/A|frameshift_variant;UGT1A8|p.F150Pfs*9|1|0.04|ENSG00000242366|chr2:233618154-233618155|-/CCAGAGTG|frameshift_variant;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7737426757812	2	552.773342	1103.53213	0.43067	0.00023806	0.52279	0.00028898	0.95346	0.00052705	552.7736027555	69.148	1.0021	69.22	68.83	69.832	0.071938					82	35	3	0	0	0	0.0028626	3	17443	17394;17443;17493		103.35	63.396	1	1829900			53179	8529;12963;8544;8548	30465	30466	65052;65053;65054	65053		911			-0.01549323011317938
VMPEVSWQL	9	Oxidation (M)	_VM(Oxidation (M))PEVSWQL_		VM(1)PEVSWQL		VM(100)PEVSWQL	0	0	1		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;UGT1A8|p.Y136Ifs*8|1|0.41|ENSG00000242366|chr2:233618110-233618111|-/A|frameshift_variant;UGT1A8|p.F150Pfs*9|1|0.04|ENSG00000242366|chr2:233618154-233618155|-/CCAGAGTG|frameshift_variant;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7736206054688	2	552.773342	1103.53213	0.2743	0.00015163	0.72544	0.00040101	0.99975	0.00055263	552.7737596395044	69.229	0.93948	69.206	68.84	69.779	-0.022087					81	33	3	0	0	0	0.0028626	3	17459	17414;17459;17505		103.35	63.396	1	1639100			53180	8529;12963;8544;8548	30465	30466	65055;65056;65057	65056		911			-0.01549323011317938
VMPSSFFLL	9	Oxidation (M)	_VM(Oxidation (M))PSSFFLL_		VM(1)PSSFFLL		VM(82)PSSFFLL	0	0	1		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7755126953125	2	528.775354	1055.53615	0.66512	0.0003517	-0.20074	-0.00010615	0.46437	0.00024555	528.7752409445138	87.571	1.4355	87.571	87.216	88.651	0					93	72	2	0	0	0	0.0084096	2	23067	23067;23111		81.864	28.315	1	3842400			53181	4483	30466	30467	65058;65059	65058		566			0.010607664823965024
VMPSSFFLL	9	Oxidation (M)	_VM(Oxidation (M))PSSFFLL_		VM(1)PSSFFLL		VM(78)PSSFFLL	0	0	1		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.77587890625	2	528.775354	1055.53615	0.48017	0.0002539	-2.8536	-0.0015089	-2.3734	-0.001255	528.7754000756801	87.461	1.497	87.548	87.119	88.616	0.08709					200	74	3	0	0	0	0.010938	2	23062	23018;23062		77.984	18.189	1	5582400			53182	4483	30466	30467	65060;65061	65061		566			0.010607664823965024
VMPSSFFLL	9	Oxidation (M)	_VM(Oxidation (M))PSSFFLL_		VM(1)PSSFFLL		VM(78)PSSFFLL	0	0	1		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7755737304688	2	528.775354	1055.53615	0.59473	0.00031448	-2.9159	-0.0015418	-2.3211	-0.0012274	528.775372898778	87.556	1.604	87.551	87.171	88.775	-0.0056229					210	80	3	0	0	0	0.010938	2	23057	23057;23099		77.984	21.047	1	5007100			53183	4483	30466	30467	65062;65063	65062		566			0.010607664823965024
VMQVHPPQFR	10	Unmodified	_VMQVHPPQFR_					0	0	0			REV__ENSG00000186732|ENST00000443721|MPPED1	REV__ENSG00000186732|ENST00000443721|MPPED1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.226806640625	3	413.553609	1237.639	-0.030903	-1.278E-05	-2.2778	-0.00094199	-2.3087	-0.00095477	413.5524481678343	14.502	0.4064	14.397	14.185	14.592	-0.10466					18	13	2	0	0	0	0.32051	1	797	797		3.8763	0.28927	1	21279	+		53184	18464	30467	30468	65064	65064					0.029682719937
VMQVHPPQFR	10	Unmodified	_VMQVHPPQFR_					0	0	0			REV__ENSG00000186732|ENST00000443721|MPPED1	REV__ENSG00000186732|ENST00000443721|MPPED1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.2267761230469	3	413.553609	1237.639	-0.11353	-4.695E-05	-1.4449	-0.00059754	-1.5584	-0.00064449	413.55301833266174	14.484	0.32691	14.418	14.261	14.588	-0.066067					17	11	2	0	0	0	0.32051	1	717	717		3.8763	0	1	16924	+		53185	18464	30467	30468	65065	65065					0.029682719937
VMRLSRLAL	9	Unmodified	_VMRLSRLAL_					0	0	0		ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.8303833007812	2	529.828786	1057.64302	0.14593	7.7315E-05	2.3927	0.0012677	2.5386	0.001345	529.8298045305588	12.414	0.19448	12.414	12.303	12.498	0					9	5	2	0	0	0	0.34809	1	137	137		1.6526	0	1	76897			53186	6724	30468	30469	65066	65066					0.11650361487431837
VMSATFAKF	9	Oxidation (M)	_VM(Oxidation (M))SATFAKF_		VM(1)SATFAKF		VM(110)SATFAKF	0	0	1		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.25732421875	2	509.257328	1016.5001	0.35303	0.00017978	0.12597	6.4154E-05	0.479	0.00024394	509.25724309698256	43.108	0.98586	43.188	42.671	43.657	0.080284					79	35	3	0	0	0	0.0016712	1	9372	9372		114.2	55.523	1	1143900			53187	12590	30469	30470	65067	65067		966			-0.007486906944563998
VMSATFAKF	9	Oxidation (M)	_VM(Oxidation (M))SATFAKF_		VM(1)SATFAKF		VM(110)SATFAKF	0	0	1		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.2575988769531	2	509.257328	1016.5001	0.11636	5.9258E-05	0.23111	0.0001177	0.34748	0.00017696	509.2572916074303	43.073	0.94807	43.157	42.683	43.631	0.083996					79	34	3	0	0	0	0.0024096	1	9347	9347		106.94	54.672	1	928830			53188	12590	30469	30470	65068	65068		966			-0.007486906944563998
VMSATFAKF	9	Oxidation (M)	_VM(Oxidation (M))SATFAKF_					0	0	1		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	509.257328	1016.5001	0.30142	0.0001535	0.087778	4.4702E-05	0.3892	0.0001982	509.25719689366565	43.313	0.88957	43.313	42.93	43.819	0	0.093892	-6.7416E-05	NaN	114.2	76	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	790580			53189	12590	30469	30470				966			-0.007486906944563998
VMSMISKIDWV	11	Unmodified	_VMSMISKIDWV_					0	0	0			REV__nc|ENSG00000198408|O60502-3|OGA	REV__nc|ENSG00000198408|O60502-3|OGA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.89459228515625	3	436.894532	1307.66177	-0.19172	-8.3763E-05	-0.11211	-4.8982E-05	-0.30384	-0.00013275	436.89461952230863	52.14	0.9003	52.139	51.71	52.61	-0.00080872					108	32	5	0	0	0	0.43198	1	12226	12226		7.0371	0.41363	1	3536400	+		53190	18822	30470	30471	65069	65069					0.02024110276306601
VMVPLIKVLV	10	Unmodified	_VMVPLIKVLV_					0	0	0			REV__ENST00000540272.1_1_11:60711109-60714230:-|nuORF	REV__ENST00000540272.1_1_11:60711109-60714230:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2590942382812	2	555.869588	1109.72462	0.25521	0.00014186	0.87	0.00048361	1.1252	0.00062547	555.8700792794032	43.888	0.15738	43.972	43.891	44.049	0.083996					6	5	2	0	0	0	0.32112	1	9682	9682		1.8442	0	1	155690	+		53191	14672	30471	30472	65070	65070					0.17415044126664725
VMVWVSSIF	9	Unmodified	_VMVWVSSIF_					0	0	0		nc|ENSG00000121853|Q92847-2|GHSR;ENSG00000121853|ENST00000241256|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2921752929688	2	534.283346	1066.55214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.628	1	89.628	89.128	90.128	0								0	0	0	0.21357	1	23726	23726		18.135	3.2967	1				53192	3011	30472	30473	65071	65071					0.021524727192854698
VMVWVSSIF	9	Unmodified	_VMVWVSSIF_					0	0	0		nc|ENSG00000121853|Q92847-2|GHSR;ENSG00000121853|ENST00000241256|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2924194335938	2	534.283346	1066.55214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.754	1	89.754	89.254	90.254	0								0	0	0	0.21357	1	23764	23764		18.135	2.2878	1				53193	3011	30472	30473	65072	65072					0.021524727192854698
VMVWVSSIF	9	Unmodified	_VMVWVSSIF_					0	0	0		nc|ENSG00000121853|Q92847-2|GHSR;ENSG00000121853|ENST00000241256|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.292236328125	2	534.283346	1066.55214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.499	1	89.59	89.09	90.09	0.090569								0	0	0	0.19325	1	23680	23680		24.674	3.8027	1				53194	3011	30472	30473	65073	65073					0.021524727192854698
VMVWVSSIF	9	Unmodified	_VMVWVSSIF_					0	0	0		nc|ENSG00000121853|Q92847-2|GHSR;ENSG00000121853|ENST00000241256|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2923583984375	2	534.283346	1066.55214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.628	1	89.718	89.218	90.218	0.090569								0	0	0	0.19325	1	23719	23719		24.674	6.5389	1				53195	3011	30472	30473	65074	65074					0.021524727192854698
VMVWVSSIF	9	Unmodified	_VMVWVSSIF_					0	0	0		nc|ENSG00000121853|Q92847-2|GHSR;ENSG00000121853|ENST00000241256|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	nc|ENSG00000121853|Q92847-2|GHSR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.29248046875	2	534.283346	1066.55214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.772	1	89.863	89.363	90.363	0.090569								0	0	0	0.19325	1	23762	23762		24.674	8.8267	1				53196	3011	30472	30473	65075	65075					0.021524727192854698
VMWGSHPV	8	Unmodified	_VMWGSHPV_					0	0	0		LTR2752_dup121|chr7:135263151-135264133:-|1.6065116481286288|0.0665708146513393|4.59|523.0|41|3|anti-sense	LTR2752_dup121|chr7:135263151-135264133:-|1.6065116481286288|0.0665708146513393|4.59|523.0|41|3|anti-sense	LTR2752_dup121|chr7:135263151-135264133:-|1.6065116481286288|0.0665708146513393|4.59|523.0|41|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7778015136719	2	456.723455	911.432358	-0.23458	-0.00010714	-1.409	-0.00064351	-1.6436	-0.00075065	456.7228832240909	13.46	0.17045	13.393	13.245	13.416	-0.067496					6	5	2	0	0	0	0.344	1	389	389		0.69038	0	1	10737			53197	12514	30473	30474	65076	65076					-0.0269009583460047
VNDLMWRLKV	10	Unmodified	_VNDLMWRLKV_					0	0	0			REV__ENSG00000196475|ENST00000358842|GK2	REV__ENSG00000196475|ENST00000358842|GK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.3207397460938	2	637.357908	1272.70126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.185	1	93.185	92.685	93.685	0								0	0	0	0.38166	1	24812	24812		1.4819	0.15237	1		+		53198	18655	30474	30475	65077	65077					0.07581998342038787
VNEACRAL	8	Unmodified	_VNEACRAL_					0	0	0		ENSG00000140398|ENST00000355059|NEIL1;ENST00000564951.1_1_15:75639698-75641681:+|nuORF;ENST00000561643.5_1_15:75639698-75645080:+|nuORF	ENSG00000140398|ENST00000355059|NEIL1	ENSG00000140398|ENST00000355059|NEIL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.22332763671875	2	438.22382	874.433086	-0.069449	-3.0434E-05	-0.78568	-0.0003443	-0.85513	-0.00037474	438.22337262313357	18.063	0.93929	18.063	17.771	18.71	0					84	31	4	0	0	0	0.42077	1	1882	1882		15.847	3.3156	1	324630			53199	4300	30475	30476	65078	65078					-0.009153011855573823
VNEELLFNKV	10	Unmodified	_VNEELLFNKV_					0	0	0			REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8347778320312	2	602.832246	1203.64994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.645	1	96.716	96.216	97.216	0.070465								0	0	0	0.37807	1	25839	25839		2.9952	0	1		+		53200	14058	30476	30477	65079	65079					0.05625952848981797
VNEKCSPLLCC	11	Unmodified	_VNEKCSPLLCC_					0	0	0			REV__ENST00000537247.5_1_12:100987507-100987675:+|nuORF	REV__ENST00000537247.5_1_12:100987507-100987675:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.8109741210938	2	604.777244	1207.53994	0.14218	8.5988E-05	-1.9812	-0.0011982	-1.839	-0.0011122	604.7757153472799	13.723	0.30272	13.619	13.411	13.713	-0.10429					14	10	2	0	0	0	0.33324	1	499	499		1.1933	0.12188	1	24308	+		53201	22091	30477	30478	65080	65080					-0.05553255077666108
VNENFLSL	8	Unmodified	_VNENFLSL_					0	0	0		nc|ENSG00000172987|Q8WWQ2-4|HPSE2;nc|ENSG00000172987|Q8WWQ2-3|HPSE2;nc|ENSG00000172987|Q8WWQ2-2|HPSE2;ENSG00000172987|ENST00000370552|HPSE2	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.75555419921875	2	468.245275	934.475997	0.37592	0.00017602	-1.0441	-0.00048889	-0.66817	-0.00031287	468.24458111651217	65.718	0.57933	65.707	65.422	66.002	-0.011337					27	20	2	0	0	0	0.3671	1	16369	16369		23.148	2.2772	1	170730			53202	6683	30478	30479	65081	65081					0.006137921435311
VNERSTIS	8	Unmodified	_VNERSTIS_					0	0	0			REV__ENSG00000069248|ENST00000261396|NUP133	REV__ENSG00000069248|ENST00000261396|NUP133	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.7480773925781	2	453.237981	904.461409	-0.028412	-1.2878E-05	-0.02061	-9.3411E-06	-0.049022	-2.2219E-05	453.2379246001076	16.409	0.42198	16.295	16.11	16.532	-0.11434					24	14	2	0	0	0	0.34353	1	1376	1376		4.756	4.756	1	47722	+		53203	13713	30479	30480	65082	65082					0.005357199954005409
VNERSTIS	8	Unmodified	_VNERSTIS_					0	0	0			REV__ENSG00000069248|ENST00000261396|NUP133	REV__ENSG00000069248|ENST00000261396|NUP133	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	453.237981	904.461409	0.028246	1.2802E-05	0.056556	2.5633E-05	0.084802	3.8436E-05	453.23801965599586	16.295	0.48161	16.295	16.093	16.574	0	0.010749	4.2153E-05	NaN	4.756	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49457	+		53204	13713	30479	30480							0.005357199954005409
VNFLVKHAF	9	Unmodified	_VNFLVKHAF_					0	0	0			REV__USP9X|p.N2091K|1|0.05|ENSG00000124486|chrX:41218435-41218435|C/A|missense_variant	REV__USP9X|p.N2091K|1|0.05|ENSG00000124486|chrX:41218435-41218435|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2984008789062	2	537.808377	1073.6022	0.26784	0.00014405	-2.6475	-0.0014239	-2.3797	-0.0012798	537.8066071220416	41.122	0.48068	41.122	40.875	41.355	0					22	17	2	0	0	0	0.24913	1	8882	8882		12.532	7.7755	1	132030	+		53205	23351	30480	30481	65083	65083					0.0683434343945919
VNFLVKHAF	9	Unmodified	_VNFLVKHAF_					0	0	0			REV__USP9X|p.N2091K|1|0.05|ENSG00000124486|chrX:41218435-41218435|C/A|missense_variant	REV__USP9X|p.N2091K|1|0.05|ENSG00000124486|chrX:41218435-41218435|C/A|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	537.808377	1073.6022	0.40734	0.00021907	-3.7398	-0.0020113	-3.3325	-0.0017922	537.806449884787	40.756	0.398	40.855	40.592	40.99	0.099407	-0.13347	-0.00020727	NaN	12.532	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176440	+		53206	23351	30480	30481							0.0683434343945919
VNFLVNHA	8	Unmodified	_VNFLVNHA_					0	0	0			REV__ENSG00000124486|ENST00000378308|USP9X	REV__ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2825622558594	2	457.248152	912.481751	0.13749	6.2867E-05	0.068181	3.1176E-05	0.20567	9.4042E-05	457.24798697469396	29	0.7632	29.013	28.706	29.469	0.012266					54	26	3	0	0	0	0.33245	1	5135	5135		13.508	0.97634	1	457240	+		53207	15234	30481	30482	65084	65084					0.022009354458418784
VNGRLLLTL	9	Unmodified	_VNGRLLLTL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.7931213378906	2	499.821484	997.628415	0.62157	0.00031067	-0.49749	-0.00024866	0.12408	6.2017E-05	499.8211841438123	64.226	0.45688	64.226	63.997	64.454	0					28	16	2	0	0	0	0.17242	1	15943	15943		36.127	0	1	315410			53208	1834	30482	30483	65085	65085					0.1295061261095043
VNGRLLLTL	9	Unmodified	_VNGRLLLTL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7929382324219	2	499.821484	997.628415	0.56726	0.00028353	-0.0052384	-2.6183E-06	0.56202	0.00028091	499.82149589368606	64.272	0.47839	64.263	64.017	64.495	-0.0095291					28	17	2	0	0	0	0.17242	1	15948	15948		36.127	0	1	194190			53209	1834	30482	30483	65086	65086					0.1295061261095043
VNHRLEIFQA	10	Unmodified	_VNHRLEIFQA_					0	0	0			REV__ENSG00000167548|ENST00000301067|KMT2D	REV__ENSG00000167548|ENST00000301067|KMT2D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2158203125	3	409.559528	1225.65676	0.09623	3.9412E-05	-2.2807	-0.00093407	-2.1844	-0.00089465	409.5583256890467	29.694	0.41912	29.694	29.58	29.999	0					16	14	2	0	0	0	0.31701	1	5334	5334		10.899	6.183	1	58976	+		53210	17391	30483	30484	65087	65087					0.052953105202277584
VNHRLEIFQA	10	Unmodified	_VNHRLEIFQA_					0	0	0			REV__ENSG00000167548|ENST00000301067|KMT2D	REV__ENSG00000167548|ENST00000301067|KMT2D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	409.559528	1225.65676	0.12564	5.1455E-05	-1.1948	-0.00048935	-1.0692	-0.0004379	409.55884539601146	29.689	0.44271	29.701	29.443	29.886	0.012266	0.003712	0.00020158	NaN	10.899	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58623	+		53211	17391	30483	30484							0.052953105202277584
VNIFPLSYLL	10	Unmodified	_VNIFPLSYLL_					0	0	0		ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	ENSG00000197818|ENST00000361573|SLC9A8	ENSG00000197818|ENST00000361573|SLC9A8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8463745117188	2	589.844625	1177.6747	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.26	1	113.26	112.76	113.76	0								0	0	0	0.38166	1	29419	29419		1.4819	0.79152	1				53212	8001	30484	30485	65088	65088					0.09296632722362119
VNIHRRVAEKS	11	Unmodified	_VNIHRRVAEKS_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.7453308105469	3	436.921349	1307.74222	-0.14277	-6.2379E-05	-0.41567	-0.00018162	-0.55844	-0.00024399	436.9211615254566	19.143	0.61805	19.027	18.614	19.232	-0.11685					38	21	2	0	0	0	0.33303	1	2031	2031		2.4348	1.1051	1	60497	+		53213	16853	30485	30486	65089	65089					0.10065475705869176
VNISASFRRK	10	Unmodified	_VNISASFRRK_					0	0	0		ENST00000503240.5_1_5:148743537-148748214:+|nuORF;ENST00000505669.5_1_5:148737686-148748214:+|nuORF;ENSG00000145882|ENST00000274569|PCYOX1L	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3455810546875	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.3	1	113.28	112.78	113.78	-0.017303								0	0	0	0.37807	1	29455	29455		2.9952	0.93549	1				53214	4677	30486	30487	65090	65090					0.09147016757128767
VNIVWAGI	8	Unmodified	_VNIVWAGI_					0	0	0		ENST00000466630.5_1_7:55980329-55991094:+|nuORF	ENST00000466630.5_1_7:55980329-55991094:+|nuORF	ENST00000466630.5_1_7:55980329-55991094:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.25384521484375	2	436.255446	870.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.298	1	86.289	85.789	86.789	-0.0090027								0	0	0	0.36169	1	22690	22690		9.3474	0	1				53215	10814	30487	30488	65091	65091					0.055910075939777926
VNLAGLLVSL	10	Unmodified	_VNLAGLLVSL_					0	0	0		ENST00000541442.5_1_16:31505185-31519098:-|nuORF;ENST00000567673.5_1_16:31504873-31508265:-|nuORF;ENSG00000140688|ENST00000327237|RUSF1	ENST00000541442.5_1_16:31505185-31519098:-|nuORF	ENST00000541442.5_1_16:31505185-31519098:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2403259277344	2	499.815867	997.617182	0.44568	0.00022276	-0.2338	-0.00011686	0.21188	0.0001059	499.81584427070436	52.995	0.51154	52.995	52.717	53.228	0					27	18	2	0	0	0	0.2623	1	12463	12463		32.786	8.7651	1	418820			53216	4328	30488	30489	65092	65092					0.11827790516804271
VNLCFIQSI	9	Unmodified	_VNLCFIQSI_					0	0	0			REV__nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	REV__nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2793579101562	2	518.778428	1035.5423	0.29839	0.0001548	0.86513	0.00044881	1.1635	0.00060361	519.2796370340491	93.064	1.7656	93.153	92.23	93.996	0.089203					271	144	3	0	0	0	0.17277	1	24857	24857		27.629	0	1	539930	+		53217	19227	30489	30490	65093	65093					0.02595284713925139
VNLHYATLP	9	Unmodified	_VNLHYATLP_					0	0	0		nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.772216796875	2	514.282192	1026.54983	-0.57819	-0.00029735	-0.68794	-0.0003538	-1.2661	-0.00065115	514.2816807747924	35.186	0.59951	35.186	34.892	35.492	0					35	21	2	0	0	0	0.25526	1	7112	7112		7.9102	0	1	218390			53218	12577	30490	30491	65094	65094					0.03761760305860662
VNLHYATLP	9	Unmodified	_VNLHYATLP_					0	0	0		nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	514.282192	1026.54983	-0.72398	-0.00037233	-0.44936	-0.0002311	-1.1733	-0.00060343	514.2817983078314	35.061	0.59076	35.136	34.814	35.405	0.075306	-0.032924	-9.7942E-05	NaN	7.9102	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226580			53219	12577	30490	30491							0.03761760305860662
VNLHYATLP	9	Unmodified	_VNLHYATLP_					0	0	0		nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	514.282192	1026.54983	-0.7677	-0.00039481	0.4664	0.00023986	-0.3013	-0.00015495	514.2818847366708	35.108	0.60436	35.185	34.837	35.441	0.077377	0.016319	0.00084397	NaN	7.9102	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212510			53220	12577	30490	30491							0.03761760305860662
VNLKNSKQA	9	Unmodified	_VNLKNSKQA_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.79876708984375	2	501.290548	1000.56654	0.47606	0.00023864	-0.1711	-8.5773E-05	0.30495	0.00015287	501.29037309872626	88.783	1.7372	88.783	88.119	89.856	0					149	96	4	0	0	0	0.24993	1	23603	23603		13.042	4.8869	1	489040			53221	5979	30491	30492	65095	65095					0.06628261191792717
VNLKREIEELI	11	Unmodified	_VNLKREIEELI_					0	0	0			REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	REV__nc|ENSG00000165802|Q6X4W1-4|NSMF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.743896484375	3	452.601282	1354.78202	-0.20102	-9.0982E-05	0.97642	0.00044193	0.7754	0.00035095	452.6017618163639	27.968	0.36682	27.968	27.84	28.207	0					20	12	2	0	0	0	0.3325	1	4836	4836		4.1166	0.52395	1	71287	+		53222	17267	30492	30493	65096	65096					0.1188155786594507
VNLLRQHD	8	Unmodified	_VNLLRQHD_					0	0	0			REV__ENSG00000187242|ENST00000251643|KRT12	REV__ENSG00000187242|ENST00000251643|KRT12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.775390625	2	497.775065	993.535577	0.32211	0.00016034	-0.60538	-0.00030135	-0.28327	-0.000141	497.7748505042307	21.992	0.34046	21.992	21.819	22.16	0					20	12	2	0	0	0	0.46092	1	3005	3005		2.0598	0	1	76723	+	+	53223	13277	30493	30494	65097	65097					0.038551078775640235
VNLPAKGAGKT	11	Unmodified	_VNLPAKGAGKT_					0	0	0			REV__FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant	REV__FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7838134765625	2	528.314023	1054.61349	0.21079	0.00011136	-0.40443	-0.00021366	-0.19364	-0.0001023	528.3139170304215	15.212	0.24923	15.103	14.955	15.204	-0.10981					12	8	2	0	0	0	0.33255	1	927	927		2.9952	1.151	1	41622	+		53224	15788	30494	30495	65098	65098					0.08837120742964544
VNLPAKGAGKT	11	Unmodified	_VNLPAKGAGKT_					0	0	0			REV__FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant	REV__FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	528.314023	1054.61349	0.2146	0.00011338	-0.71561	-0.00037807	-0.50101	-0.00026469	528.3133793892976	15.118	0.18764	15.118	15.044	15.232	0	-0.003982	-0.00047422	NaN	2.9952	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28245	+		53225	15788	30494	30495							0.08837120742964544
VNLPAKGAGKT	11	Unmodified	_VNLPAKGAGKT_					0	0	0			REV__FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant	REV__FLNB|p.S1810Tfs*49|1|0.14|ENSG00000136068|chr3:58145924-58145925|GC/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.314023	1054.61349	0.20296	0.00010723	0.1728	9.129E-05	0.37576	0.00019852	528.3140363823028	15.209	0.20634	15.144	15.069	15.275	-0.064413	0.022945	0.00046449	NaN	2.9952	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39594	+		53226	15788	30494	30495							0.08837120742964544
VNLPPELRRQ	10	Unmodified	_VNLPPELRRQ_					0	0	0		ENST00000582931.5_1_17:16836228-16875389:-|nuORF;nc|ENSG00000240505|O14836-3|TNFRSF13B;ENST00000581616.2_1_17:16844708-16875389:-|nuORF;nc|ENSG00000240505|O14836-2|TNFRSF13B;ENSG00000240505|ENST00000261652|TNFRSF13B	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.3561401367188	2	611.356754	1220.69895	0.50133	0.00030649	-0.49431	-0.0003022	0.0070257	4.2952E-06	611.356874855733	85.915	3.4539	85.915	85.015	88.469	0					613	148	6	0	0	0	0.33594	10	22408	22408;22453;22501;22548;22598;22646;22691;22720;22820;22861		15.248	15.248	1	20112000			53227	8522	30495	30496	65099;65100;65101;65102;65103;65104;65105;65106;65107;65108	65099					0.09743285928584555
VNLPPELRRQ	10	Unmodified	_VNLPPELRRQ_					0	0	0		ENST00000582931.5_1_17:16836228-16875389:-|nuORF;nc|ENSG00000240505|O14836-3|TNFRSF13B;ENST00000581616.2_1_17:16844708-16875389:-|nuORF;nc|ENSG00000240505|O14836-2|TNFRSF13B;ENSG00000240505|ENST00000261652|TNFRSF13B	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.3560791015625	2	611.356754	1220.69895	0.44261	0.00027059	-0.51326	-0.00031379	-0.070651	-4.3193E-05	611.3568664668344	85.766	3.4316	85.851	84.958	88.389	0.084251					518	149	6	0	0	0	0.3001	7	22367	22322;22367;22408;22452;22503;22551;22594		20.415	15.248	1	23228000			53228	8522	30495	30496	65109;65110;65111;65112;65113;65114;65115	65110					0.09743285928584555
VNLPPELRRQ	10	Unmodified	_VNLPPELRRQ_					0	0	0		ENST00000582931.5_1_17:16836228-16875389:-|nuORF;nc|ENSG00000240505|O14836-3|TNFRSF13B;ENST00000581616.2_1_17:16844708-16875389:-|nuORF;nc|ENSG00000240505|O14836-2|TNFRSF13B;ENSG00000240505|ENST00000261652|TNFRSF13B	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.3595581054688	2	611.356754	1220.69895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.385	1	86.469	85.969	86.969	0.084251								0	0	0	0.36581	1	22726	22726		8.1555	1.9497	1				53229	8522	30495	30496	65116	65116					0.09743285928584555
VNLPPELRRQ	10	Unmodified	_VNLPPELRRQ_					0	0	0		ENST00000582931.5_1_17:16836228-16875389:-|nuORF;nc|ENSG00000240505|O14836-3|TNFRSF13B;ENST00000581616.2_1_17:16844708-16875389:-|nuORF;nc|ENSG00000240505|O14836-2|TNFRSF13B;ENSG00000240505|ENST00000261652|TNFRSF13B	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.3569946289062	2	611.356754	1220.69895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.093	1	87.18	86.68	87.68	0.08709								0	0	0	0.35954	1	22943	22943		10.8	0.72558	1				53230	8522	30495	30496	65117	65117					0.09743285928584555
VNLPPELRRQ	10	Unmodified	_VNLPPELRRQ_					0	0	0		ENST00000582931.5_1_17:16836228-16875389:-|nuORF;nc|ENSG00000240505|O14836-3|TNFRSF13B;ENST00000581616.2_1_17:16844708-16875389:-|nuORF;nc|ENSG00000240505|O14836-2|TNFRSF13B;ENSG00000240505|ENST00000261652|TNFRSF13B	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.356689453125	2	611.356754	1220.69895	0.44459	0.0002718	-0.44488	-0.00027198	-0.00028819	-1.7619E-07	611.3568775099138	85.774	2.9629	85.765	84.945	87.908	-0.0090027					520	126	5	0	0	0	0.3001	10	22605	22385;22427;22474;22514;22560;22605;22645;22694;22792;22834		20.415	15.248	1	22110000			53231	8522	30495	30496	65118;65119;65120;65121;65122;65123;65124;65125;65126;65127	65123					0.09743285928584555
VNLPPELRRQ	10	Unmodified	_VNLPPELRRQ_					0	0	0		ENST00000582931.5_1_17:16836228-16875389:-|nuORF;nc|ENSG00000240505|O14836-3|TNFRSF13B;ENST00000581616.2_1_17:16844708-16875389:-|nuORF;nc|ENSG00000240505|O14836-2|TNFRSF13B;ENSG00000240505|ENST00000261652|TNFRSF13B	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.3560180664062	2	611.356754	1220.69895	0.39711	0.00024278	-0.48286	-0.0002952	-0.085744	-5.242E-05	611.3564277555655	90.716	1.3437	90.717	89.63	90.973	0.00039673					176	109	2	0	0	0	0.31986	1	23995	23995		4.897	0	1	383890			53232	8522	30495	30496	65128	65128					0.09743285928584555
VNLPSLIL	8	Unmodified	_VNLPSLIL_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.77874755859375	2	434.778754	867.542954	0.1933	8.4044E-05	-0.19226	-8.3589E-05	0.0010458	4.5471E-07	434.7786374644741	74.807	1.1938	74.807	74.6	75.794	0					75	42	3	0	0	0	0.28696	1	19193	19193		32.305	2.0807	1	1100100	+		53233	15947	30496	30497	65129	65129					0.10388447425293634
VNLPSLIL	8	Unmodified	_VNLPSLIL_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.77862548828125	2	434.778754	867.542954	0.21997	9.564E-05	-0.23369	-0.0001016	-0.013712	-5.9615E-06	434.77862725900275	74.912	0.82729	74.881	74.642	75.47	-0.031487					60	30	3	0	0	0	0.28696	1	19186	19186		32.305	2.0807	1	1154000	+		53234	15947	30496	30497	65130	65130					0.10388447425293634
VNLQKGLTR	9	Unmodified	_VNLQKGLTR_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.772216796875	2	514.81419	1027.61383	0.15221	7.8358E-05	2.6442	0.0013613	2.7964	0.0014397	515.3168331568196	35.573	0.73868	35.573	35.062	35.8	0					39	26	2	0	0	0	0.16284	1	7112	7112		37.974	3.8716	1	367710	+		53235	17870	30497	30498	65131	65131					0.1011254046279646
VNLQKGLTR	9	Unmodified	_VNLQKGLTR_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7723999023438	2	514.81419	1027.61383	-0.29161	-0.00015012	3.5681	0.0018369	3.2765	0.0016868	515.3172570164628	35.405	0.72066	35.482	35.088	35.809	0.077377					38	25	2	0	0	0	0.16284	1	7069	7069		37.974	3.8716	1	328960	+		53236	17870	30497	30498	65132	65132					0.1011254046279646
VNLSKEVRT	9	Unmodified	_VNLSKEVRT_					0	0	0		ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	ENSG00000204186|ENST00000374423|ZDBF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7736206054688	2	523.303655	1044.59276	0.46693	0.00024435	-1.1719	-0.00061324	-0.70494	-0.0003689	523.3029570035537	91.537	0.42785	91.537	91.279	91.707	0					44	32	2	0	0	0	0.25988	1	24267	24267		3.9444	0	1	89757			53237	8203	30498	30499	65133	65133					0.07224530363282611
VNLTNGELIF	10	Unmodified	_VNLTNGELIF_					0	0	0			REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.306640625	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.506	1	93.506	93.006	94.006	0								0	0	0	0.36922	1	24908	24908		6.7232	0	1		+		53238	20636	30499	30500	65134	65134					0.04261994786179457
VNLTNGELIF	10	Unmodified	_VNLTNGELIF_					0	0	0			REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3060913085938	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.655	1	93.655	93.155	94.155	0								0	0	0	0.36922	1	24951	24951		6.7232	0	1		+		53239	20636	30499	30500	65135	65135					0.04261994786179457
VNLTNGELIF	10	Unmodified	_VNLTNGELIF_					0	0	0			REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.30712890625	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.567	1	97.567	97.067	98.067	0								0	0	0	0.36126	1	26096	26096		10.074	0.6908	1		+		53240	20636	30499	30500	65136	65136					0.04261994786179457
VNLTNGELIF	10	Unmodified	_VNLTNGELIF_					0	0	0			REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.30712890625	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.692	1	98.692	98.192	99.192	0								0	0	0	0.37044	1	26411	26411		6.2058	1.3088	1		+		53241	20636	30499	30500	65137	65137					0.04261994786179457
VNLTNGELIF	10	Unmodified	_VNLTNGELIF_					0	0	0			REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3403930664062	2	560.305864	1118.59717	0.23652	0.00013252	1.1416	0.00063966	1.3782	0.00077219	560.3073059382446	92.439	0.30347	92.439	92.235	92.538	0					32	23	2	0	0	0	0.31629	1	24605	24605		6.2058	0	1	102000	+		53242	20636	30499	30500	65138	65138					0.04261994786179457
VNLTNGELIF	10	Unmodified	_VNLTNGELIF_					0	0	0			REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3062744140625	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.238	1	93.324	92.824	93.824	0.08667								0	0	0	0.36126	1	24822	24822		10.074	3.3508	1		+		53243	20636	30499	30500	65139	65139					0.04261994786179457
VNLTNGELIF	10	Unmodified	_VNLTNGELIF_					0	0	0			REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.306884765625	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.854	1	94.937	94.437	95.437	0.082779								0	0	0	0.36922	1	25314	25314		6.7232	0	1		+		53244	20636	30499	30500	65140	65140					0.04261994786179457
VNLTNGELIF	10	Unmodified	_VNLTNGELIF_					0	0	0			REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3079223632812	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.291	1	95.373	94.873	95.873	0.082779								0	0	0	0.36922	1	25449	25449		6.7232	0	1		+		53245	20636	30499	30500	65141	65141					0.04261994786179457
VNLTNGELIF	10	Unmodified	_VNLTNGELIF_					0	0	0			REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3071899414062	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.51	1	98.571	98.071	99.071	0.061516								0	0	0	0.37044	1	26367	26367		6.2058	0.97511	1		+		53246	20636	30499	30500	65142	65142					0.04261994786179457
VNLTNGELIF	10	Unmodified	_VNLTNGELIF_					0	0	0			REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3065795898438	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.12	1	101.15	100.65	101.65	0.027206								0	0	0	0.36126	1	26977	26977		10.074	2.465	1		+		53247	20636	30499	30500	65143	65143					0.04261994786179457
VNLTNGELIF	10	Unmodified	_VNLTNGELIF_					0	0	0			REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.3060302734375	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.838	1	90.838	90.338	91.338	0.0003891								0	0	0	0.36922	1	24083	24083		6.7232	0	1		+		53248	20636	30499	30500	65144	65144					0.04261994786179457
VNLTNGELIF	10	Unmodified	_VNLTNGELIF_					0	0	0			REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.3068237304688	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.365	1	95.361	94.861	95.861	-0.0038147								0	0	0	0.36922	1	25472	25472		6.7232	0.51738	1		+		53249	20636	30499	30500	65145	65145					0.04261994786179457
VNLTNGELIF	10	Unmodified	_VNLTNGELIF_					0	0	0			REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.3068237304688	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.492	1	95.489	94.989	95.989	-0.0038147								0	0	0	0.36126	1	25509	25509		10.074	3.3508	1		+		53250	20636	30499	30500	65146	65146					0.04261994786179457
VNLTNGELIF	10	Unmodified	_VNLTNGELIF_					0	0	0			REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	REV__ENST00000395505.6_1_9:95609873-95609993:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.306640625	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.85	1	100.85	100.35	101.35	-0.0054703								0	0	0	0.36126	1	26955	26955		10.074	0.6908	1		+		53251	20636	30499	30500	65147	65147					0.04261994786179457
VNLVVMVVV	9	Unmodified	_VNLVVMVVV_					0	0	0		ENST00000483033.1_1_1:93620229-93625801:-|nuORF;ENSG00000117500|ENST00000370282|TMED5	ENST00000483033.1_1_1:93620229-93625801:-|nuORF	ENST00000483033.1_1_1:93620229-93625801:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.9562683105469	2	486.301539	970.588524	0.42283	0.00020563	0.24454	0.00011892	0.66738	0.00032455	486.30164916198237	48.562	1.0079	48.562	47.987	48.995	0					56	35	2	0	0	0	0.2451	1	11215	11215		10.824	2.9138	1	639660			53252	2796	30500	30501	65148	65148					0.10205349616023796
VNLYIFSRIL	10	Unmodified	_VNLYIFSRIL_					0	0	0		L1MC1_dup2137|chr3:11202598-11203364:-|2.1876770070443263|0.3234029913481031|2.76|542.0|15|2|sense	L1MC1_dup2137|chr3:11202598-11203364:-|2.1876770070443263|0.3234029913481031|2.76|542.0|15|2|sense	L1MC1_dup2137|chr3:11202598-11203364:-|2.1876770070443263|0.3234029913481031|2.76|542.0|15|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8699340820312	2	619.368798	1236.72304	0.11984	7.4222E-05	1.672	0.0010356	1.7918	0.0011098	619.3707405203077	91.712	1.9109	91.803	91.166	93.077	0.090675					275	137	3	0	0	0	0.40262	1	24466	24466		2.9952	0	1	768030			53253	12454	30501	30502	65149	65149					0.11415126362294359
VNLYIFSRIL	10	Unmodified	_VNLYIFSRIL_					0	0	0		L1MC1_dup2137|chr3:11202598-11203364:-|2.1876770070443263|0.3234029913481031|2.76|542.0|15|2|sense	L1MC1_dup2137|chr3:11202598-11203364:-|2.1876770070443263|0.3234029913481031|2.76|542.0|15|2|sense	L1MC1_dup2137|chr3:11202598-11203364:-|2.1876770070443263|0.3234029913481031|2.76|542.0|15|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8700561523438	2	619.368798	1236.72304	0.37078	0.00022965	1.7351	0.0010747	2.1059	0.0013043	619.370569418945	91.757	1.4647	91.757	91.303	92.768	0.00046539					206	95	3	0	0	0	0.37454	1	24308	24308		8.1555	0	1	1022300			53254	12454	30501	30502	65150	65150					0.11415126362294359
VNLYKEKMKL	10	Unmodified	_VNLYKEKMKL_					0	0	0			REV__nc|ENSG00000293412|O75343|GUCY1B2	REV__nc|ENSG00000293412|O75343|GUCY1B2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3695068359375	2	633.367941	1264.72133	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.09	1	112.1	111.6	112.6	0.0131								0	0	0	0.38126	1	29181	29181		1.6526	0.32309	1		+		53255	23261	30502	30503	65151	65151					0.09955749282016768
VNPRKRLDHL	10	Unmodified	_VNPRKRLDHL_					0	0	0		ENSG00000266826|ENST00000583666|IGBP1C	ENSG00000266826|ENST00000583666|IGBP1C	ENSG00000266826|ENST00000583666|IGBP1C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.3726196289062	2	624.370195	1246.72584	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.16	1	98.16	97.66	98.66	0								0	0	0	0.37739	1	26259	26259		3.2813	0	1				53256	8680	30503	30504	65152	65152					0.11234394539792447
VNQLSAGYE	9	Unmodified	_VNQLSAGYE_					0	0	0		ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.8035583496094	2	490.737814	979.461075	0.16235	7.9669E-05	0.02584	1.268E-05	0.18819	9.235E-05	490.73777273768945	22.585	0.94721	22.497	22.191	23.138	-0.08761					80	33	3	0	0	0	0.25202	1	3241	3241		10.824	0	1	290480			53257	4715	30504	30505	65153	65153					-0.02947699724472841
VNRFKVTL	8	Unmodified	_VNRFKVTL_					0	0	0			REV__ENST00000054666.10_1_1:7840405-7840498:+|nuORF	REV__ENST00000054666.10_1_1:7840405-7840498:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.78955078125	2	488.800552	975.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.116	1	87.116	86.616	87.616	0								0	0	0	0.37277	1	22957	22957		4.3292	0	1		+		53258	19378	30505	30506	65154	65154					0.09778056922436917
VNRFYRRLS	9	Unmodified	_VNRFYRRLS_					0	0	0		nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1;ENST00000473813.1_1_21:40582792-40590527:-|nuORF	nc|ENSG00000185658|Q9NSI6-3|BRWD1	nc|ENSG00000185658|Q9NSI6-3|BRWD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.514892578125	3	404.231634	1209.67307	-0.25168	-0.00010174	1.4728	0.00059537	1.2212	0.00049363	404.2324569584674	16.028	0.62917	16.028	15.892	16.521	0					38	21	2	0	0	0	0.25612	1	1341	1341		8.1555	0.67846	1	43192			53259	7548	30506	30507	65155	65155					0.07662436476994117
VNRVSVLPFRF	11	Unmodified	_VNRVSVLPFRF_					0	0	0			REV__nc|ENSG00000160688|Q8NFF5-3|FLAD1	REV__nc|ENSG00000160688|Q8NFF5-3|FLAD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.6358947753906	3	445.262823	1332.76664	0.38697	0.0001723	1.2671	0.00056417	1.654	0.00073647	445.5978832251514	35.924	0.34772	35.924	35.745	36.093	0					17	12	2	0	0	0	0.33236	1	7253	7253		2.4348	0	1	184710	+		53260	16911	30507	30508	65156	65156					0.1135673585938548
VNRVSVLPFRF	11	Unmodified	_VNRVSVLPFRF_					0	0	0			REV__nc|ENSG00000160688|Q8NFF5-3|FLAD1	REV__nc|ENSG00000160688|Q8NFF5-3|FLAD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	445.262823	1332.76664	0.35709	0.000159	1.1272	0.00050189	1.4843	0.00066088	445.2632254183515	35.826	0.38972	35.912	35.645	36.034	0.086246	-0.0060086	-7.2082E-05	NaN	2.4348	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101240	+		53261	16911	30507	30508							0.1135673585938548
VNSLPKLLELV	11	Unmodified	_VNSLPKLLELV_					0	0	0			REV__ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	REV__ATM|p.T2640Lfs*6|1|0.34|ENSG00000149311|chr11:108332890-108332890|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.27099609375	3	408.923585	1223.74892	-0.41215	-0.00016854	-0.33529	-0.00013711	-0.74744	-0.00030565	408.92339798250447	39.353	0.69585	39.353	39.135	39.831	0					40	25	2	0	0	0	0.42582	1	8369	8369		7.846	1.9779	1	289350	+		53262	13117	30508	30509	65157	65157					0.14599975813871424
VNSQLSMLF	9	Unmodified	_VNSQLSMLF_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7676391601562	2	519.76806	1037.52157	0.51805	0.00026927	-2.01	-0.0010448	-1.492	-0.00077549	519.7675836416964	86.13	0.63524	86.121	85.918	86.554	-0.0090027					49	24	3	0	0	0	0.047483	1	22636	22636		53.833	1.5644	1	474120			53263	8049	30509	30510	65158	65158					0.004306943342498926
VNSSVFLHL	9	Unmodified	_VNSSVFLHL_					0	0	0		ENST00000462196.1_1_9:130588871-130592043:-|nuORF;nc|ENSG00000106991|P17813-2|ENG;ENSG00000106991|ENST00000373203|ENG	ENST00000462196.1_1_9:130588871-130592043:-|nuORF	ENST00000462196.1_1_9:130588871-130592043:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.30108642578125	2	508.282192	1014.54983	0.2132	0.00010837	0.094924	4.8248E-05	0.30813	0.00015662	508.78372106950656	59.426	0.30618	59.52	59.353	59.659	0.093243					17	10	2	0	0	0	0.24581	1	14501	14501		16.942	4.4107	1	148220			53264	2108	30510	30511	65159	65159					0.04313760305853975
VNSSVFLHL	9	Unmodified	_VNSSVFLHL_					0	0	0		ENST00000462196.1_1_9:130588871-130592043:-|nuORF;nc|ENSG00000106991|P17813-2|ENG;ENSG00000106991|ENST00000373203|ENG	ENST00000462196.1_1_9:130588871-130592043:-|nuORF	ENST00000462196.1_1_9:130588871-130592043:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.3008728027344	2	508.282192	1014.54983	0.43917	0.00022322	-0.34082	-0.00017323	0.09835	4.999E-05	508.2819693054554	59.539	0.27943	59.528	59.372	59.652	-0.011486					15	9	2	0	0	0	0.22061	1	14527	14527		18.146	2.2992	1	212470			53265	2108	30510	30511	65160	65160					0.04313760305853975
VNTIGFEFL	9	Unmodified	_VNTIGFEFL_					0	0	0			REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.2754516601562	2	520.276575	1038.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.386	1	97.381	96.881	97.881	-0.0055466								0	0	0	0.24066	1	26071	26071		9.3831	0	1		+		53266	23233	30511	30512	65161	65161					0.020869382117098212
VNVKNQKS	8	Unmodified	_VNVKNQKS_					0	0	0		ENST00000578411.1_1_17:28120861-28257182:-|nuORF	ENST00000578411.1_1_17:28120861-28257182:-|nuORF	ENST00000578411.1_1_17:28120861-28257182:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7861633300781	2	458.764166	915.513779	-0.19468	-8.9311E-05	0.52087	0.00023896	0.32619	0.00014965	458.76426757484757	12.756	0.37357	12.656	12.521	12.894	-0.099291					15	12	2	0	0	0	0.34437	1	188	188		0.69038	0	1	16426			53267	12061	30512	30513	65162	65162					0.05264303129001746
VNYGLNQCM	9	Unmodified	_VNYGLNQCM_					0	0	0			REV__FZD4|p.F135Lfs*9|1|0.06|ENSG00000174804|chr11:86952351-86952351|A/-|frameshift_variant	REV__FZD4|p.F135Lfs*9|1|0.06|ENSG00000174804|chr11:86952351-86952351|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2685546875	2	521.228245	1040.44194	0.52082	0.00027147	0.87431	0.00045571	1.3951	0.00072718	521.2284390694135	37.203	0.58968	37.296	37.06	37.65	0.093014					30	21	2	0	0	0	0.25202	1	7589	7589		10.824	5.5933	1	331480	+		53268	17853	30513	30514	65163	65163					-0.0766669561139679
VNYKLIADK	9	Unmodified	_VNYKLIADK_					0	0	0			REV__nc|ENSG00000227345|Q86W56-3|PARG	REV__nc|ENSG00000227345|Q86W56-3|PARG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.8107299804688	2	532.310949	1062.60735	0.69534	0.00037014	-1.519	-0.00080858	-0.82367	-0.00043845	532.8109311675807	66.15	1.2255	66.15	65.768	66.994	0					96	43	3	0	0	0	0.17787	1	16477	16477		26.884	0.54238	1	1876400	+		53269	19124	30514	30515	65164	65164					0.07854602511406483
VNYVLAVIAP	10	Unmodified	_VNYVLAVIAP_					0	0	0			REV__ENST00000417282.1_1_7:56372411-56373020:-|nuORF	REV__ENST00000417282.1_1_7:56372411-56373020:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2791748046875	2	529.815867	1057.61718	0.64669	0.00034262	0.76468	0.00040514	1.4114	0.00074776	529.8169229491019	88.422	0.15573	88.422	88.331	88.487	0					10	8	2	0	0	0	0.3156	1	23342	23342		10.824	1.4765	1	33862	+		53270	16644	30515	30516	65165	65165					0.09067790516814966
VPAAAGFHTV	10	Unmodified	_VPAAAGFHTV_					0	0	0		ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.2593078613281	2	485.261259	968.507966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.884	1	25.884	25.384	26.384	0								0	0	0	0.3749	1	4185	4185		4.3292	0.73274	1				53271	4637	30516	30517	65166	65166					0.022452046173043527
VPAAARAGAIA	11	Unmodified	_VPAAARAGAIA_					0	0	0		ENST00000546564.5_1_12:120636605-120638589:-|nuORF;ENST00000548568.5_1_12:120636605-120638589:-|nuORF;RPLP0|p.S236*|1|0.21|ENSG00000089157|chr12:120197407-120197407|G/-|frameshift_variant;nc|ENSG00000089157|P05388-2|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENSG00000089157|ENST00000392514|RPLP0	ENST00000546564.5_1_12:120636605-120638589:-|nuORF	ENST00000546564.5_1_12:120636605-120638589:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.6683044433594	2	484.287808	966.561064	-0.70437	-0.00034112	-2.3233	-0.0011251	-3.0277	-0.0014663	484.2869616887291	35.196	0.46893	35.196	34.971	35.439	0					24	16	2	0	0	0	0.28452	1	7016	7016		29.082	8.628	1	180690			53272	1350	30517	30518	65167	65167					0.07644582399973388
VPAARSILAL	10	Unmodified	_VPAARSILAL_					0	0	0		nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.82135009765625	2	505.821484	1009.62842	0.64249	0.00032499	-0.57343	-0.00029005	0.069065	3.4935E-05	505.820935117506	55.763	0.53895	55.763	55.482	56.021	0					46	18	3	0	0	0	0.11865	1	13326	13326		43.982	14.9	1	1456400			53273	1669	30518	30519	65168	65168					0.1239861261092301
VPAARSILAL	10	Unmodified	_VPAARSILAL_					0	0	0		nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.82135009765625	2	505.821484	1009.62842	0.61134	0.00030923	-0.33861	-0.00017128	0.27273	0.00013795	505.8210866594526	55.72	0.48871	55.791	55.501	55.989	0.070885					43	17	3	0	0	0	0.084702	1	13306	13306		51.415	22.334	1	1372900			53274	1669	30518	30519	65169	65169					0.1239861261092301
VPAARSILAL	10	Unmodified	_VPAARSILAL_					0	0	0		nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	nc|ENSG00000101161|O94906-2|PRPF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.31146240234375	2	505.821484	1009.62842	0.60962	0.00030836	-0.93135	-0.0004711	-0.32173	-0.00016274	505.8206677752434	55.829	0.59928	55.81	55.508	56.107	-0.019077					51	21	3	0	0	0	0.24335	1	13342	13342		34.222	11.485	1	1396100			53275	1669	30518	30519	65170	65170					0.1239861261092301
VPADASAHI	9	Unmodified	_VPADASAHI_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;TTLL4|p.G590Wfs*5|1|0.38|ENSG00000135912|chr2:218745210-218745211|-/T|frameshift_variant	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.7295837402344	2	440.729792	879.445031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.705	1	28.701	28.201	29.201	-0.0042572								0	0	0	0.20238	1	5045	5045		21.747	0	1				53276	3918	30519	30520	65171	65171					0.00048638829264291417
VPADLRISI	9	Unmodified	_VPADLRISI_					0	0	0		ENSG00000152402|ENST00000526355|GUCY1A2;nc|ENSG00000152402|P33402-3|GUCY1A2;nc|ENSG00000152402|P33402-2|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.28167724609375	2	492.297842	982.581131	0.5046	0.00024841	-2.1499	-0.0010584	-1.6453	-0.00080997	492.2964605606739	57.227	0.61641	57.227	56.908	57.525	0					50	22	3	0	0	0	0.1558	1	13771	13771		41.956	7.5538	1	835730			53277	5018	30520	30521	65172	65172					0.08914333339930636
VPADLRISI	9	Unmodified	_VPADLRISI_					0	0	0		ENSG00000152402|ENST00000526355|GUCY1A2;nc|ENSG00000152402|P33402-3|GUCY1A2;nc|ENSG00000152402|P33402-2|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2816467285156	2	492.297842	982.581131	0.37275	0.0001835	-1.9329	-0.00095156	-1.5602	-0.00076806	492.29666577741904	57.066	0.47909	57.144	56.857	57.336	0.078674					43	17	3	0	0	0	0.14646	1	13733	13733		36.506	10.238	1	950760			53278	5018	30520	30521	65173	65173					0.08914333339930636
VPADLRISI	9	Unmodified	_VPADLRISI_					0	0	0		ENSG00000152402|ENST00000526355|GUCY1A2;nc|ENSG00000152402|P33402-3|GUCY1A2;nc|ENSG00000152402|P33402-2|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	ENSG00000152402|ENST00000526355|GUCY1A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.28173828125	2	492.297842	982.581131	0.22534	0.00011093	-1.8965	-0.00093367	-1.6712	-0.00082273	492.29660974442197	57.26	0.49763	57.243	56.946	57.443	-0.017197					41	17	3	0	0	0	0.1335	1	13783	13783		40.239	10.399	1	806470			53279	5018	30520	30521	65174	65174					0.08914333339930636
VPAEPKLAF	9	Unmodified	_VPAEPKLAF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF;ENST00000425095.1_1_10:35986317-35986536:+|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2822570800781	2	486.28166	970.548768	0.45311	0.00022034	0.75744	0.00036833	1.2105	0.00058866	486.28191624592375	51.155	1.1234	51.155	50.818	51.941	0					83	41	3	0	0	0	0.014206	1	11883	11883		72.968	23.035	1	4084000			53280	4775	30521	30522	65175	65175					0.06231545936930161
VPAEPKLAF	9	Unmodified	_VPAEPKLAF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF;ENST00000425095.1_1_10:35986317-35986536:+|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.800537109375	2	486.28166	970.548768	0.33883	0.00016477	0.70718	0.00034389	1.046	0.00050865	486.2819157829015	51.137	1.1316	51.183	50.9	52.032	0.046577					81	41	3	0	0	0	0.14646	1	11840	11840		29.841	5.82	1	4121000			53281	4775	30521	30522	65176	65176					0.06231545936930161
VPAEPKLAF	9	Unmodified	_VPAEPKLAF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF;ENST00000425095.1_1_10:35986317-35986536:+|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2819519042969	2	486.28166	970.548768	0.42629	0.0002073	0.60414	0.00029378	1.0304	0.00050108	486.2818527369941	51.202	1.1573	51.212	50.861	52.018	0.0095673					88	43	3	0	0	0	0.014206	1	11881	11881		72.968	23.035	1	3950300			53282	4775	30521	30522	65177	65177					0.06231545936930161
VPAERREKL	9	Unmodified	_VPAERREKL_					0	0	0		nc|ENSG00000177469|Q6NZI2-3|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3251342773438	2	549.324922	1096.63529	0.178	9.778E-05	-0.11535	-6.3366E-05	0.062648	3.4414E-05	549.324680625779	15.382	0.44711	15.318	15.158	15.605	-0.064414					29	14	3	0	0	0	0.2719	1	1014	1014		13.042	2.9685	1	134690			53283	6989	30522	30523	65178	65178					0.0908392549151813
VPAERREKL	9	Unmodified	_VPAERREKL_					0	0	0		nc|ENSG00000177469|Q6NZI2-3|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	549.324922	1096.63529	0.1213	6.6631E-05	0.11912	6.5438E-05	0.24042	0.00013207	549.3248091966835	15.246	0.42528	15.246	15.072	15.498	0	-0.035481	0.00012149	NaN	13.042	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110020			53284	6989	30522	30523							0.0908392549151813
VPAERREKL	9	Unmodified	_VPAERREKL_					0	0	0		nc|ENSG00000177469|Q6NZI2-3|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	549.324922	1096.63529	0.26925	0.0001479	-0.011095	-6.0945E-06	0.25815	0.00014181	549.3247021746782	15.39	0.54041	15.28	15.038	15.579	-0.10981	-0.0011496	-2.1572E-05	NaN	13.042	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132450			53285	6989	30522	30523							0.0908392549151813
VPAERREKL	9	Unmodified	_VPAERREKL_					0	0	0		nc|ENSG00000177469|Q6NZI2-3|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.324922	1096.63529	0.178	9.778E-05	-0.11535	-6.3366E-05	0.062648	3.4414E-05	549.324680625779	15.382	0.44711	15.318	15.158	15.605	-0.064414	0.036631	-0.00013612	NaN	13.042	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134690			53286	6989	30522	30523							0.0908392549151813
VPAGAFRDIP	10	Unmodified	_VPAGAFRDIP_					0	0	0		ENST00000578826.1_1_17:38282575-38282656:+|nuORF	ENST00000578826.1_1_17:38282575-38282656:+|nuORF	ENST00000578826.1_1_17:38282575-38282656:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.3245239257812	2	521.787641	1041.56073	0.43899	0.00022906	0.53121	0.00027718	0.9702	0.00050624	521.7874309181977	66.21	0.65228	66.196	65.859	66.511	-0.013596					37	23	2	0	0	0	0.31482	1	16475	16475		11.64	8.0438	1	229170			53287	12065	30523	30524	65179	65179					0.04161162680134112
VPAGQGLIVV	10	Unmodified	_VPAGQGLIVV_					0	0	0		ENST00000561273.5_1_14:24761833-24768312:-|nuORF;ENSG00000157379|ENST00000288111|DHRS1	ENST00000561273.5_1_14:24761833-24768312:-|nuORF	ENST00000561273.5_1_14:24761833-24768312:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7947082519531	2	476.794935	951.575317	-0.22176	-0.00010573	-0.055823	-2.6616E-05	-0.27758	-0.00013235	476.79475826457974	60.191	0.46462	60.191	59.977	60.441	0					47	16	4	0	0	0	0.30958	1	14766	14766		19.257	1.1106	1	1900100			53288	5301	30524	30525	65180	65180					0.09759234828288754
VPAHEMPT	8	Unmodified	_VPAHEMPT_					0	0	0		nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.21112060546875	2	441.212921	880.411288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.514	1	84.595	84.095	85.095	0.080887								0	0	0	0.37595	1	22152	22152		2.8892	0.31174	1				53289	1495	30525	30526	65181	65181					-0.03370105934118328
VPAHFVAL	8	Unmodified	_VPAHFVAL_					0	0	0		ENSG00000166278|ENST00000299367|C2;nc|ENSG00000166278|P06681-3|C2;nc|ENSG00000166278|P06681-2|C2;ENST00000486124.5_1_6:31905151-31913001:+|nuORF	ENSG00000166278|ENST00000299367|C2	ENSG00000166278|ENST00000299367|C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.26458740234375	2	427.250163	852.485774	0.19167	8.1893E-05	1.7851	0.00076268	1.9768	0.00084457	427.25151885276705	47.802	0.49346	47.802	47.44	47.934	0					39	17	4	0	0	0	0.28567	1	10863	10863		32.454	8.2437	1	1974000			53290	6056	30526	30527	65182	65182					0.05363024939561001
VPAHFVAL	8	Unmodified	_VPAHFVAL_					0	0	0		ENSG00000166278|ENST00000299367|C2;nc|ENSG00000166278|P06681-3|C2;nc|ENSG00000166278|P06681-2|C2;ENST00000486124.5_1_6:31905151-31913001:+|nuORF	ENSG00000166278|ENST00000299367|C2	ENSG00000166278|ENST00000299367|C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.2643127441406	2	427.250163	852.485774	0.20858	8.9116E-05	1.749	0.00074725	1.9575	0.00083636	427.25137857501915	47.731	0.41154	47.778	47.482	47.893	0.047523					35	14	3	0	0	0	0.28567	2	10806	10806;10848		32.454	15.367	1	1460200			53291	6056	30526	30527	65183;65184	65183					0.05363024939561001
VPAHFVAL	8	Unmodified	_VPAHFVAL_					0	0	0		ENSG00000166278|ENST00000299367|C2;nc|ENSG00000166278|P06681-3|C2;nc|ENSG00000166278|P06681-2|C2;ENST00000486124.5_1_6:31905151-31913001:+|nuORF	ENSG00000166278|ENST00000299367|C2	ENSG00000166278|ENST00000299367|C2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.2642822265625	2	427.250163	852.485774	0.22305	9.5299E-05	1.1964	0.00051117	1.4195	0.00060647	427.2509399612851	47.733	0.47161	47.777	47.43	47.902	0.04332					46	17	4	0	0	0	0.20676	2	10802	10802;10847		41.817	17.607	1	1760600			53292	6056	30526	30527	65185;65186	65185					0.05363024939561001
VPAKKITAA	9	Unmodified	_VPAKKITAA_					0	0	0		ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	449.7895812988281	2	449.789653	897.564752	-0.08676	-3.9024E-05	0.15072	6.7792E-05	0.063959	2.8768E-05	449.7895608560151	14.908	0.55974	14.908	14.729	15.289	0					31	19	3	0	0	0	0.28225	1	866	866		11.495	2.1116	1	121060			53293	7780	30527	30528	65187	65187					0.11187252173829165
VPAKKITAA	9	Unmodified	_VPAKKITAA_					0	0	0		ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.7895812988281	2	449.789653	897.564752	-0.057981	-2.6079E-05	0.19132	8.6053E-05	0.13334	5.9973E-05	449.78953488510473	15	0.75989	14.89	14.676	15.436	-0.10981					38	26	3	0	0	0	0.23007	1	904	904		19.257	3.4098	1	101530			53294	7780	30527	30528	65188	65188					0.11187252173829165
VPAKKITAA	9	Unmodified	_VPAKKITAA_					0	0	0		ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.7897033691406	2	449.789653	897.564752	-0.080231	-3.6087E-05	0.10992	4.944E-05	0.029688	1.3353E-05	449.789465944254	14.994	0.54499	14.93	14.76	15.305	-0.064413					27	18	2	0	0	0	0.18208	1	901	901		26.268	0.86883	1	112690			53295	7780	30527	30528	65189	65189					0.11187252173829165
VPAKRTGI	8	Unmodified	_VPAKRTGI_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2;nc|ENSG00000172403|Q9UMS6-5|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5703125	2	421.266345	840.518136	0.016893	7.1166E-06	0.4892	0.00020609	0.5061	0.0002132	421.2664172922356	16.495	1.2943	16.433	16.147	17.442	-0.062534					90	45	4	0	0	0	0.3366	1	1415	1415		12.532	0	1	1016700			53296	6632	30528	30529	65190	65190					0.09149812342559471
VPALGRGILY	10	Unmodified	_VPALGRGILY_					0	0	0			REV__nc|ENSG00000173599|P11498-2|PC	REV__nc|ENSG00000173599|P11498-2|PC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2639770507812	2	529.821484	1057.62842	0.37108	0.00019661	0.27669	0.00014659	0.64777	0.0003432	529.8214867616048	47.059	0.45013	47.111	46.955	47.405	0.052574					26	16	2	0	0	0	0.3156	1	10687	10687		6.7232	1.4925	1	217400	+		53297	23088	30529	30530	65191	65191					0.10190612610949756
VPALGRGILY	10	Unmodified	_VPALGRGILY_					0	0	0			REV__nc|ENSG00000173599|P11498-2|PC	REV__nc|ENSG00000173599|P11498-2|PC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.263916015625	2	529.821484	1057.62842	1.1011	0.00058339	-0.7827	-0.00041469	0.31841	0.0001687	529.8208757498936	47.086	0.4762	47.14	46.908	47.384	0.054375					26	16	2	0	0	0	0.3156	1	10690	10690		6.7232	0.51738	1	193030	+		53298	23088	30529	30530	65192	65192					0.10190612610949756
VPALPKSLISL	11	Unmodified	_VPALPKSLISL_					0	0	0		nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3657836914062	2	569.365724	1136.7169	0.37409	0.000213	0.076855	4.3759E-05	0.45095	0.00025676	569.3656234641819	70.232	0.5042	70.299	70.075	70.579	0.066048					34	17	3	0	0	0	0.24585	1	17812	17812		27.088	14.914	1	391010			53299	8517	30530	30531	65193	65193					0.1540060813074433
VPALPKSLISL	11	Unmodified	_VPALPKSLISL_					0	0	0		nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.365724	1136.7169	0.2711	0.00015436	0.27944	0.0001591	0.55054	0.00031346	569.3656533469508	70.26	0.49046	70.26	70.049	70.54	0	-0.013917	0.00020457	NaN	27.088	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424900			53300	8517	30530	30531							0.1540060813074433
VPALPKSLISL	11	Unmodified	_VPALPKSLISL_					0	0	0		nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	569.365724	1136.7169	0.2898	0.000165	0.003287	1.8715E-06	0.29308	0.00016687	569.3655770149168	70.286	0.50208	70.263	70.049	70.552	-0.022087	-0.010585	-0.00010989	NaN	27.088	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348530			53301	8517	30530	30531							0.1540060813074433
VPALQNKI	8	Unmodified	_VPALQNKI_					0	0	0		CSPP1|p.G1069Wfs*5|1|0.22|ENSG00000104218|chr8:67179923-67179924|-/T|frameshift_variant;nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;ENST00000521168.5_1_8:68070723-68107652:+|nuORF;nc|ENSG00000104218|Q1MSJ5-2|CSPP1	CSPP1|p.G1069Wfs*5|1|0.22|ENSG00000104218|chr8:67179923-67179924|-/T|frameshift_variant	CSPP1|p.G1069Wfs*5|1|0.22|ENSG00000104218|chr8:67179923-67179924|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.22442626953125	2	441.774003	881.533452	0.1478	6.5293E-05	1.3613	0.0006014	1.5091	0.00066669	441.77483199854237	43.522	0.37859	43.522	43.362	43.741	0					22	13	2	0	0	0	0.31375	1	9624	9624		19.439	0.18201	1	360020			53302	244	30531	30532	65194	65194					0.08794679139748496
VPAPDFLFEIE	11	Unmodified	_VPAPDFLFEIE_					0	0	0		nc|ENSG00000138617|Q8N5Y8-3|PARP16;ENSG00000138617|ENST00000649807|PARP16	nc|ENSG00000138617|Q8N5Y8-3|PARP16	nc|ENSG00000138617|Q8N5Y8-3|PARP16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2203369140625	3	426.220178	1275.63871	-0.17228	-7.3428E-05	0.43978	0.00018744	0.26751	0.00011402	426.22040720827454	26.46	1.0146	26.46	26.106	27.121	0					111	35	4	0	0	0	0.42506	1	4360	4360		7.9454	7.9454	1	1103900			53303	4166	30532	30533	65195	65195					0.011911307548416517
VPAPDFLFEIE	11	Unmodified	_VPAPDFLFEIE_					0	0	0		nc|ENSG00000138617|Q8N5Y8-3|PARP16;ENSG00000138617|ENST00000649807|PARP16	nc|ENSG00000138617|Q8N5Y8-3|PARP16	nc|ENSG00000138617|Q8N5Y8-3|PARP16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.22039794921875	3	426.220178	1275.63871	0.091005	3.8788E-05	0.17996	7.6703E-05	0.27096	0.00011549	426.2202941257824	26.538	1.0791	26.515	26.043	27.122	-0.022238					114	37	4	0	0	0	0.37165	1	4377	4377		14.957	4.6419	1	1279600			53304	4166	30532	30533	65196	65196					0.011911307548416517
VPAPDFLFEIE	11	Unmodified	_VPAPDFLFEIE_					0	0	0		nc|ENSG00000138617|Q8N5Y8-3|PARP16;ENSG00000138617|ENST00000649807|PARP16	nc|ENSG00000138617|Q8N5Y8-3|PARP16	nc|ENSG00000138617|Q8N5Y8-3|PARP16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.8273315429688	2	638.826629	1275.63871	0.68963	0.00044055	0.35701	0.00022807	1.0466	0.00066862	638.826830319682	26.556	0.76227	26.534	26.185	26.947	-0.022236					52	26	3	0	0	0	0.46392	1	4402	4402		1.3295	0	1	295110			53305	4166	30532	30533	65197	65197					0.011911307548416517
VPAPDRKGF	9	Unmodified	_VPAPDRKGF_					0	0	0		ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.8033752441406	2	493.774534	985.534515	0.33899	0.00016738	-0.0045512	-2.2472E-06	0.33444	0.00016514	493.7745929761135	24.556	0.54212	24.556	24.248	24.79	0					23	17	2	0	0	0	0.23235	1	3775	3775		21.537	9.0054	1	62076			53306	5401	30533	30534	65198	65198					0.04116893508660269
VPAPDRKGF	9	Unmodified	_VPAPDRKGF_					0	0	0		ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.8031005859375	2	493.774534	985.534515	0.37373	0.00018454	0.0099423	4.9093E-06	0.38367	0.00018945	493.774594963145	24.611	0.55261	24.556	24.196	24.748	-0.055931					24	18	2	0	0	0	0.24993	1	3802	3802		13.042	7.8118	1	88634			53307	5401	30533	30534	65199	65199					0.04116893508660269
VPAPDRKGF	9	Unmodified	_VPAPDRKGF_					0	0	0		ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	ENSG00000159339|ENST00000375448|PADI4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.8031921386719	2	493.774534	985.534515	0.15782	7.7927E-05	0.43493	0.00021476	0.59275	0.00029268	493.7748281258577	24.574	0.48912	24.543	24.373	24.862	-0.031408					24	16	2	0	0	0	0.24848	1	3795	3795		13.906	1.3745	1	91178			53308	5401	30533	30534	65200	65200					0.04116893508660269
VPAPVPLMSL	10	Oxidation (M)	_VPAPVPLM(Oxidation (M))SL_		VPAPVPLM(1)SL		VPAPVPLM(74)SL	0	0	1		ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2965087890625	2	520.296453	1038.57835	0.41995	0.0002185	0.26798	0.00013943	0.68793	0.00035793	520.2966861907073	68.058	1.0365	68.058	67.425	68.462	0					76	37	3	0	0	0	0.017528	1	17104	17104		74.423	10.186	1	920150			53309	6227	30534	30535	65201	65201		733			0.0606074189076935
VPAPVPLMSL	10	Oxidation (M)	_VPAPVPLM(Oxidation (M))SL_		VPAPVPLM(1)SL		VPAPVPLM(74)SL	0	0	1		ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	ENSG00000167978|ENST00000301740|SRRM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.296875	2	520.296453	1038.57835	0.37368	0.00019443	0.77186	0.00040159	1.1455	0.00059602	520.2970135761472	68.071	1.227	68.055	67.323	68.55	-0.016296					71	42	3	0	0	0	0.017528	1	17070	17070		74.423	10.186	1	732980			53310	6227	30534	30535	65202	65202		733			0.0606074189076935
VPAQFYIW	8	Unmodified	_VPAQFYIW_					0	0	0			REV__ENST00000504778.5_1_5:54552318-54579000:-|nuORF	REV__ENST00000504778.5_1_5:54552318-54579000:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2794189453125	2	512.268553	1022.52255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.245	1	51.254	50.754	51.754	0.0095634								0	0	0	0.35985	1	11935	11935		10.183	0.83596	1		+		53311	13689	30535	30536	65203	65203					0.012192767654596537
VPAQPITTTF	10	Unmodified	_VPAQPITTTF_					0	0	0		ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7950439453125	2	537.795132	1073.57571	0.4608	0.00024782	-0.45886	-0.00024677	0.0019375	1.042E-06	537.7948098055164	57.896	0.75333	57.896	57.605	58.358	0					64	26	3	0	0	0	0.11334	1	13997	13997		70.332	34.205	1	1278600			53312	908	30536	30537	65204	65204					0.041866097574256855
VPAQPITTTF	10	Unmodified	_VPAQPITTTF_					0	0	0		ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.795166015625	2	537.795132	1073.57571	0.42874	0.00023058	-0.50888	-0.00027367	-0.080133	-4.3095E-05	537.7948396446236	57.753	0.76563	57.839	57.571	58.336	0.085621					77	27	4	0	0	0	0.18121	1	13938	13938		55.503	27.874	1	1296500			53313	908	30536	30537	65205	65205					0.041866097574256855
VPAQPITTTF	10	Unmodified	_VPAQPITTTF_					0	0	0		ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	ENSG00000069535|ENST00000378069|MAOB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7950439453125	2	537.795132	1073.57571	0.50047	0.00026915	-0.3034	-0.00016317	0.19707	0.00010598	537.7949865325002	57.827	0.91587	57.809	57.497	58.413	-0.0172					77	33	3	0	0	0	0.18121	1	13995	13995		47.594	11.467	1	1278800			53314	908	30536	30537	65206	65206					0.041866097574256855
VPAQRRRL	8	Unmodified	_VPAQRRRL_					0	0	0			REV__ENST00000540016.5_1_12:109994935-110011292:-|nuORF	REV__ENST00000540016.5_1_12:109994935-110011292:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.3146667480469	2	498.314692	994.614831	0.043446	2.165E-05	0.030466	1.5182E-05	0.073912	3.6831E-05	498.3146816257014	18.375	0.48021	18.317	18.059	18.539	-0.058174					29	16	2	0	0	0	0.46022	1	1932	1932		2.3027	0	1	62431	+		53315	22108	30537	30538	65207	65207					0.11730799622375798
VPAQVQSEI	9	Unmodified	_VPAQVQSEI_					0	0	0		ENSG00000170633|ENST00000361234|RNF34;nc|ENSG00000170633|Q969K3-2|RNF34	ENSG00000170633|ENST00000361234|RNF34	ENSG00000170633|ENST00000361234|RNF34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.8001403808594	2	485.763832	969.513111	0.22919	0.00011133	0.89721	0.00043583	1.1264	0.00054716	485.7643517697783	43.196	0.48476	43.196	42.982	43.467	0					33	17	3	0	0	0	0.22061	1	9476	9476		18.146	0.011366	1	446830			53316	6469	30538	30539	65208	65208					0.027134636892810704
VPARILVDL	9	Unmodified	_VPARILVDL_					0	0	0		ENST00000480182.1_1_2:130940128-130948196:+|nuORF	ENST00000480182.1_1_2:130940128-130948196:+|nuORF	ENST00000480182.1_1_2:130940128-130948196:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3157958984375	2	498.316035	994.617516	0.00060805	3.03E-07	-0.22944	-0.00011433	-0.22883	-0.00011403	498.3160707243773	60.22	0.93295	60.315	59.961	60.894	0.095093					100	33	4	0	0	0	0.05341	1	14654	14654		51.63	2.0755	1	3723500			53317	11003	30539	30540	65209	65209					0.11999210236660929
VPARKIIKSV	10	Unmodified	_VPARKIIKSV_					0	0	0			REV__nc|ENSG00000198408|O60502-3|OGA	REV__nc|ENSG00000198408|O60502-3|OGA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7966918945312	2	555.871508	1109.72846	0.45912	0.00025521	-0.45483	-0.00025283	0.0042894	2.3844E-06	555.8711386404876	49.931	0.43583	49.976	49.749	50.185	0.044891					35	16	3	0	0	0	0.31926	1	11582	11582		5.7319	0	1	395870	+		53318	18822	30540	30541	65210	65210					0.17798849944756512
VPASAPANR	9	Unmodified	_VPASAPANR_					0	0	0		ENST00000565125.5_1_11:68658919-68659369:-|nuORF	ENST00000565125.5_1_11:68658919-68659369:-|nuORF	ENST00000565125.5_1_11:68658919-68659369:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7508239746094	2	441.743234	881.471915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.525	1	31.525	31.025	32.025	0								0	0	0	0.18374	1	5901	5901		26.884	1.4843	1				53319	11960	30541	30542	65211	65211					0.0264374744045881
VPASFRLQM	9	Oxidation (M)	_VPASFRLQM(Oxidation (M))_		VPASFRLQM(1)		VPASFRLQM(150)	0	0	1		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7817993164062	2	532.781502	1063.54845	0.33448	0.00017821	0.10895	5.8048E-05	0.44343	0.00023625	532.7817444468499	42.118	1.0775	42.118	41.825	42.902	0					49	38	2	0	0	0	7.3453E-05	3	9083	9083;9133;9152		145.13	81.567	1	2511800			53320	7998	30542	30543	65212;65213;65214	65212		874			0.01921802945435047
VPASFRLQM	9	Oxidation (M)	_VPASFRLQM(Oxidation (M))_		VPASFRLQM(1)		VPASFRLQM(150)	0	0	1		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7817993164062	2	532.781502	1063.54845	0.44485	0.00023701	-0.24784	-0.00013205	0.19701	0.00010496	532.781552016069	41.862	0.98207	41.952	41.754	42.736	0.090252					48	36	2	0	0	0	7.3453E-05	3	9043	9043;9087;9106		145.13	81.567	1	3171300			53321	7998	30542	30543	65215;65216;65217	65215		874			0.01921802945435047
VPASFRLQM	9	Oxidation (M)	_VPASFRLQM(Oxidation (M))_		VPASFRLQM(1)		VPASFRLQM(140)	0	0	1		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.781494140625	2	532.781502	1063.54845	0.73171	0.00038984	-0.1628	-8.6737E-05	0.56891	0.0003031	532.7815325603488	41.81	1.0494	41.906	41.7	42.749	0.096626					49	38	2	0	0	0	0.00012108	3	9003	9003;9057;9070		137.42	76.066	1	3152100			53322	7998	30542	30543	65218;65219;65220	65218		874			0.01921802945435047
VPASHAPSL	9	Unmodified	_VPASHAPSL_					0	0	0		nc|ENSG00000099998|P36269-3|GGT5;ENSG00000099998|ENST00000327365|GGT5	nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-3|GGT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.7401123046875	2	439.74016	877.465767	0.24345	0.00010706	-0.69095	-0.00030384	-0.4475	-0.00019678	439.73985406951203	29.793	0.67198	29.793	29.441	30.113	0					38	23	2	0	0	0	0.25989	1	5405	5405		14.838	0.25658	1	137270			53323	1513	30543	30544	65221	65221					0.022132292089509065
VPASHAPSL	9	Unmodified	_VPASHAPSL_					0	0	0		nc|ENSG00000099998|P36269-3|GGT5;ENSG00000099998|ENST00000327365|GGT5	nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-3|GGT5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	439.74016	877.465767	0.12613	5.5467E-05	-0.5745	-0.00025263	-0.44837	-0.00019717	439.7399167061029	29.76	0.73174	29.773	29.272	30.004	0.012264	0.10776	5.0766E-05	NaN	14.838	37	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114690			53324	1513	30543	30544							0.022132292089509065
VPASHAPSL	9	Unmodified	_VPASHAPSL_					0	0	0		nc|ENSG00000099998|P36269-3|GGT5;ENSG00000099998|ENST00000327365|GGT5	nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-3|GGT5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	439.74016	877.465767	-0.070076	-3.0815E-05	-3.8584	-0.0016967	-3.9284	-0.0017275	439.73970188849944	29.415	0.12136	29.428	29.359	29.481	0.013475	-0.23632	-0.0028373	NaN	14.838	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33004			53325	1513	30543	30544							0.022132292089509065
VPASKRPPL	9	Unmodified	_VPASKRPPL_					0	0	0		ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.8004455566406	2	482.800552	963.58655	0.3291	0.00015889	-0.80027	-0.00038637	-0.47117	-0.00022748	482.800029154714	21.025	0.995	21.025	20.709	21.704	0					79	34	3	0	0	0	0.006189	2	2707	2707;2759		85.272	33.004	1	520560			53326	7080	30544	30545	65222;65223	65222					0.10330056922407493
VPASKRPPL	9	Unmodified	_VPASKRPPL_					0	0	0		ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.8003845214844	2	482.800552	963.58655	0.45853	0.00022138	-0.93403	-0.00045095	-0.47551	-0.00022957	482.7999828167184	21.186	0.83664	21.076	20.836	21.673	-0.11003					77	29	4	0	0	0	0.006189	1	2770	2770		85.272	33.004	1	702630			53327	7080	30544	30545	65224	65224					0.10330056922407493
VPASKRPPL	9	Unmodified	_VPASKRPPL_					0	0	0		ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.8003845214844	2	482.800552	963.58655	0.39042	0.00018849	-0.93242	-0.00045017	-0.542	-0.00026168	482.79999696627766	21.142	0.87871	21.089	20.779	21.658	-0.052912					83	30	4	0	0	0	0.012929	2	2732	2732;2784		74.929	22.661	1	606850			53328	7080	30544	30545	65225;65226	65225					0.10330056922407493
VPATDRNAL	9	Unmodified	_VPATDRNAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7615966796875	2	478.761623	955.508694	0.00511	2.4465E-06	0.11949	5.7209E-05	0.1246	5.9656E-05	478.7616266872182	25.862	1.2256	25.862	25.533	26.759	0					105	42	3	0	0	0	0.0024096	3	4146	4146;4193;4240		106.94	51.151	1	2309300			53329	1887	30545	30546	65227;65228;65229	65227					0.029159992663721823
VPATDRNAL	9	Unmodified	_VPATDRNAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7617492675781	2	478.761623	955.508694	0.024544	1.1751E-05	0.088517	4.2378E-05	0.11306	5.4129E-05	478.7616156634535	25.904	1.2397	25.865	25.556	26.795	-0.038671					102	43	3	0	0	0	0.0041491	3	4194	4145;4194;4236		93.166	54.99	1	2452400			53330	1887	30545	30546	65230;65231;65232	65231					0.029159992663721823
VPATDRNAL	9	Unmodified	_VPATDRNAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.76171875	2	478.761623	955.508694	0.14291	6.8421E-05	0.0033427	1.6004E-06	0.14626	7.0022E-05	478.76155925359717	25.886	1.4525	25.864	25.579	27.031	-0.022238					112	51	3	0	0	0	0.0028542	2	4201	4201;4245		103.42	55.671	1	2271100			53331	1887	30545	30546	65233;65234	65233					0.029159992663721823
VPATLPEL	8	Unmodified	_VPATLPEL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.24713134765625	2	420.247286	838.48002	0.090095	3.7862E-05	-0.15103	-6.3472E-05	-0.060939	-2.561E-05	420.24710328464903	63.14	0.91248	63.131	62.778	63.691	-0.0085564					54	32	2	0	0	0	0.17536	1	15636	15636		53.576	0	1	599810			53332	12859	30546	30547	65235	65235					0.054318816372301626
VPATRILLL	9	Unmodified	_VPATRILLL_					0	0	0		ENST00000533632.5_1_11:118894121-118894199:+|nuORF	ENST00000533632.5_1_11:118894121-118894199:+|nuORF	ENST00000533632.5_1_11:118894121-118894199:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3343811035156	2	498.334227	994.653902	0.38239	0.00019056	-0.22752	-0.00011338	0.15487	7.7179E-05	498.33444600556777	67.975	1.9443	67.975	67.673	69.618	0					205	70	5	0	0	0	0.11461	1	17214	17214		36.127	5.4905	1	33411000			53333	11651	30547	30548	65236	65236					0.15636087133384535
VPATRILLL	9	Unmodified	_VPATRILLL_					0	0	0		ENST00000533632.5_1_11:118894121-118894199:+|nuORF	ENST00000533632.5_1_11:118894121-118894199:+|nuORF	ENST00000533632.5_1_11:118894121-118894199:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.33447265625	2	498.334227	994.653902	0.35811	0.00017846	-0.26457	-0.00013184	0.093538	4.6613E-05	498.33442301344934	67.987	2.4153	67.971	67.672	70.087	-0.016296					236	86	5	0	0	0	0.16283	1	17220	17220		29.082	3.6823	1	33486000			53334	11651	30547	30548	65237	65237					0.15636087133384535
VPATWLRW	8	Unmodified	_VPATWLRW_					0	0	0		ENST00000292385.9_1_5:176894615-176895140:-|nuORF;ENST00000472831.5_1_5:176884436-176895158:-|nuORF	ENST00000292385.9_1_5:176894615-176895140:-|nuORF	ENST00000292385.9_1_5:176894615-176895140:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7877197265625	2	514.787444	1027.56034	0.34017	0.00017512	0.56807	0.00029243	0.90824	0.00046755	514.7878453302911	20.104	0.53999	19.988	19.642	20.182	-0.11592					42	18	3	0	0	0	0.46092	1	2453	2453		2.0598	0.21551	1	110530			53335	9161	30548	30549	65238	65238					0.047657877509664104
VPAWLTVPRVT	11	Unmodified	_VPAWLTVPRVT_					0	0	0		ENST00000606615.1_1_5:114598289-114598739:+|nuORF	ENST00000606615.1_1_5:114598289-114598739:+|nuORF	ENST00000606615.1_1_5:114598289-114598739:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.7608947753906	3	413.580041	1237.71829	0.35042	0.00014493	-0.56219	-0.00023251	-0.21177	-8.7583E-05	413.91404732342386	37.544	0.39243	37.544	37.314	37.707	0					23	13	3	0	0	0	0.33146	1	7764	7764		4.1166	0	1	144570			53336	12300	30549	30550	65239	65239					0.10894242219478656
VPCSNERV	8	Unmodified	_VPCSNERV_					0	0	0			REV__ENSG00000206384|ENST00000358511|COL6A6	REV__ENSG00000206384|ENST00000358511|COL6A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.75592041015625	2	452.221277	902.428001	-0.15811	-7.1501E-05	0.16138	7.2981E-05	0.0032717	1.4795E-06	452.22144257247123	13.341	0.17357	13.341	13.254	13.427	0					8	5	2	0	0	0	0.34419	1	420	420		1.8442	0	1	12336	+		53337	19018	30550	30551	65240	65240					-0.027116050481708953
VPDAKIRIF	9	Unmodified	_VPDAKIRIF_					0	0	0		ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000491035.5_1_X:153626749-153628283:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	ENST00000467168.5_1_X:153626860-153629039:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2639770507812	2	529.821484	1057.62842	0.81064	0.00042949	-0.70684	-0.0003745	0.1038	5.4995E-05	529.821017325173	47.122	0.56065	47.122	46.932	47.493	0					27	19	2	0	0	0	0.25202	1	10733	10733		3.5965	0	1	263270			53338	4761	30551	30552	65241	65241					0.10190612610927019
VPDICPFLLSD	11	Unmodified	_VPDICPFLLSD_					0	0	0		nc|ENSG00000165966|Q6ZMN7-4|PDZRN4;nc|ENSG00000165966|Q6ZMN7-2|PDZRN4;ENSG00000165966|ENST00000402685|PDZRN4	nc|ENSG00000165966|Q6ZMN7-4|PDZRN4	nc|ENSG00000165966|Q6ZMN7-4|PDZRN4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.2629699707031	3	406.874014	1217.60021	0.23891	9.7204E-05	0.53523	0.00021777	0.77414	0.00031498	406.87407918263256	32.407	0.63215	32.463	32.182	32.814	0.055309					55	22	4	0	0	0	0.33025	1	6151	6151		9.2438	9.2438	1	398150			53339	6016	30552	30553	65242	65242					0.00011501848689476901
VPDIIIQTI	9	Unmodified	_VPDIIIQTI_					0	0	0		ENST00000553731.1_1_14:51102099-51132046:-|nuORF;ENST00000555720.5_1_14:51111705-51132064:-|nuORF	ENST00000553731.1_1_14:51102099-51132046:-|nuORF	ENST00000553731.1_1_14:51102099-51132046:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7653503417969	2	506.307875	1010.6012	0.2347	0.00011883	-1.1251	-0.00056963	-0.89035	-0.00045079	506.30723832634226	68.441	0.75317	68.513	68.24	68.993	0.071938					43	27	2	0	0	0	0.24688	1	17159	17159		10.074	2.7847	1	453160			53340	11823	30553	30554	65243	65243					0.0963208427989457
VPDKHYPKD	9	Unmodified	_VPDKHYPKD_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2686157226562	2	549.782556	1097.55056	0.2222	0.00012216	2.8688	0.0015772	3.091	0.0016994	550.285575988514	27.41	0.46959	27.41	27.146	27.615	0					24	15	2	0	0	0	0.26031	1	4603	4603		3.5965	1.019	1	81991			53341	5186	30554	30555	65244	65244					0.005685549549070856
VPDLAQMYQLF	11	Unmodified	_VPDLAQMYQLF_					0	0	0		nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	nc|ENSG00000139842|Q13619-2|CUL4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7675476074219	3	442.225046	1323.65331	0.31124	0.00013764	1.4552	0.00064353	1.7665	0.00078117	442.22491275865616	40.48	0.11134	40.579	40.505	40.617	0.099407					5	3	2	0	0	0	0.33182	1	8626	8626		3.0723	0	1	62086			53342	4268	30555	30556	65245	65245					0.004428796313277417
VPDLDRILLP	10	Unmodified	_VPDLDRILLP_					0	0	0		ENST00000303277.6_1_4:1718369-1718675:-|nuORF	ENST00000303277.6_1_4:1718369-1718675:-|nuORF	ENST00000303277.6_1_4:1718369-1718675:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8438110351562	2	575.845156	1149.67576	0.3573	0.00020575	-2.3512	-0.0013539	-1.9939	-0.0011482	575.8431080000703	91.368	0.35688	91.458	91.229	91.586	0.090668					40	27	2	0	0	0	0.39745	1	24179	24179		3.9444	0.94915	1	172070			53343	9244	30556	30557	65246	65246					0.10690847091291289
VPDLSKWEEQ	10	Unmodified	_VPDLSKWEEQ_					0	0	0			REV__ENSG00000196267|ENST00000682614|ZNF836	REV__ENSG00000196267|ENST00000682614|ZNF836	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8839111328125	3	410.871549	1229.59282	-0.10518	-4.3216E-05	-0.38307	-0.00015739	-0.48825	-0.00020061	410.87316529871237	15.675	0.6366	15.611	15.305	15.942	-0.064413					44	21	3	0	0	0	0.40943	1	1025	1025		1.7423	1.0446	1	39972	+		53344	18637	30557	30558	65247	65247					-0.012795144273923142
VPDNRRLFEL	10	Unmodified	_VPDNRRLFEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.8490600585938	2	629.848761	1257.68297	0.47219	0.00029741	-0.027473	-1.7304E-05	0.44472	0.0002801	629.8487050194292	49.021	1.2017	49.021	48.721	49.923	0					112	43	4	0	0	0	0.0010901	4	11270	11223;11270;11323;11375		114.5	80.095	1	1783100			53345	530	30558	30559	65248;65249;65250;65251	65249					0.06443579691699597
VPDNRRLFEL	10	Unmodified	_VPDNRRLFEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.23492431640625	3	420.234933	1257.68297	0.070572	2.9657E-05	-0.12054	-5.0654E-05	-0.049964	-2.0997E-05	420.23490592299703	49.011	1.7744	49.011	48.606	50.381	0					183	64	4	0	0	0	0.12389	3	11303	11259;11303;11351		42.835	23.691	1	7829300			53346	530	30558	30559	65252;65253;65254	65253					0.06443579691699597
VPDNRRLFEL	10	Unmodified	_VPDNRRLFEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.8489990234375	2	629.848761	1257.68297	0.19444	0.00012247	0.15431	9.7195E-05	0.34875	0.00021966	629.848842671675	49.038	1.2113	49.083	48.796	50.007	0.044891					123	44	4	0	0	0	0.0042139	3	11284	11232;11284;11331		118.21	91.941	1	1849700			53347	530	30558	30559	65255;65256;65257	65256					0.06443579691699597
VPDNRRLFEL	10	Unmodified	_VPDNRRLFEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.2348937988281	3	420.234933	1257.68297	0.061529	2.5857E-05	-0.11684	-4.91E-05	-0.055311	-2.3244E-05	420.23491181027305	49.076	1.5252	49.121	48.743	50.268	0.044891					177	56	4	0	0	0	0.09057	3	11280	11280;11330;11380		50.13	30.986	1	7684100			53348	530	30558	30559	65258;65259;65260	65258					0.06443579691699597
VPDNRRLFEL	10	Unmodified	_VPDNRRLFEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.8490600585938	2	629.848761	1257.68297	0.18634	0.00011736	0.34774	0.00021902	0.53408	0.00033639	629.8489716844052	48.988	1.1773	49.02	48.684	49.861	0.032043					120	42	4	0	0	0	0.0038032	4	11260	11209;11260;11314;11365		101.54	75.275	1	1841800			53349	530	30558	30559	65261;65262;65263;65264	65262					0.06443579691699597
VPDNRRLFEL	10	Unmodified	_VPDNRRLFEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2348327636719	3	420.234933	1257.68297	-0.04764	-2.002E-05	-0.34384	-0.00014449	-0.39148	-0.00016451	420.2349487244923	49.003	1.77	49.035	48.602	50.372	0.032043					243	64	9	0	0	0	0.032393	4	11238	11238;11279;11325;11369		62.869	34.687	1	7910700			53350	530	30558	30559	65265;65266;65267;65268	65265					0.06443579691699597
VPDPELLSC	9	Unmodified	_VPDPELLSC_					0	0	0			REV__HUNK|p.R298C|1|0.19|ENSG00000142149|chr21:31968267-31968267|C/T|missense_variant	REV__HUNK|p.R298C|1|0.19|ENSG00000142149|chr21:31968267-31968267|C/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2973937988281	2	486.738968	971.463383	0.31524	0.00015344	-3.4417	-0.0016752	-3.1264	-0.0015218	486.7371062872171	33.525	0.17101	33.525	33.393	33.564	0					8	5	2	0	0	0	0.22596	1	6523	6523		15.847	7.2539	1	53962	+		53351	22766	30559	30560	65269	65269					-0.023489873110293047
VPDPGARQ	8	Unmodified	_VPDPGARQ_					0	0	0		ENST00000292377.3_1_7:99774686-99774926:-|nuORF	ENST00000292377.3_1_7:99774686-99774926:-|nuORF	ENST00000292377.3_1_7:99774686-99774926:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.2348327636719	2	420.222134	838.429715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.916	1	48.961	48.461	49.461	0.044891								0	0	0	0.35014	1	11229	11229		14.582	0	1				53352	9160	30560	30561	65270	65270					0.004037720320980043
VPDSITTWQF	10	Unmodified	_VPDSITTWQF_					0	0	0		nc|ENSG00000291164|Q6ZMU1|C3P1	nc|ENSG00000291164|Q6ZMU1|C3P1	nc|ENSG00000291164|Q6ZMU1|C3P1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.2957153320312	2	597.295496	1192.57644	0.74694	0.00044615	1.2581	0.00075144	2.005	0.0011976	597.295408654153	78.811	0.43005	78.781	78.552	78.982	-0.030434					35	17	3	0	0	0	0.31867	1	20383	20383		18.146	0	1	110410			53353	13014	30561	30562	65271	65271					-0.012145955935011443
VPDSITTWQF	10	Unmodified	_VPDSITTWQF_					0	0	0		nc|ENSG00000291164|Q6ZMU1|C3P1	nc|ENSG00000291164|Q6ZMU1|C3P1	nc|ENSG00000291164|Q6ZMU1|C3P1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	597.295496	1192.57644	0.75926	0.0004535	1.461	0.00087262	2.2202	0.0013261	597.295457090746	78.76	0.3955	78.76	78.533	78.929	0	0.0032338	-0.00010989	NaN	18.146	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140580			53354	13014	30561	30562							-0.012145955935011443
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.3120727539062	2	585.311677	1168.6088	0.23422	0.00013709	0.4159	0.00024343	0.65012	0.00038052	585.3120362348557	42.777	1.3506	42.777	42.33	43.681	0					127	49	3	0	0	0	1.6018E-12	3	9359	9312;9359;9412		158.08	102.57	1	1918400			53355	5928	30562	30563	65272;65273;65274	65273					0.031241918095247456
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.3121948242188	2	585.311677	1168.6088	0.16822	9.8464E-05	0.37157	0.00021749	0.5398	0.00031595	585.3120241886106	42.642	1.1426	42.727	42.238	43.381	0.085201					109	41	3	0	0	0	7.7232E-09	3	9290	9238;9290;9338		146.68	99.085	1	1981000			53356	5928	30562	30563	65275;65276;65277	65276					0.031241918095247456
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.3126831054688	2	585.311677	1168.6088	0.23112	0.00013528	0.33877	0.00019828	0.56989	0.00033356	585.3120311373741	42.568	1.375	42.659	42.124	43.499	0.091362					123	49	3	0	0	0	7.7232E-09	4	9201	9201;9250;9298;9346		146.68	99.085	1	1876600			53357	5928	30562	30563	65278;65279;65280;65281	65278					0.031241918095247456
VPDSVTPLII	10	Unmodified	_VPDSVTPLII_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7766723632812	2	527.313158	1052.61176	0.53771	0.00028354	-0.40656	-0.00021438	0.13115	6.9157E-05	527.3127774641699	76.741	0.6955	76.741	76.422	77.117	0					65	25	3	0	0	0	0.23848	1	19786	19786		37.974	12.575	1	309660			53358	1023	30563	30564	65282	65282					0.08756066934347473
VPDSVTPLII	10	Unmodified	_VPDSVTPLII_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7762451171875	2	527.313158	1052.61176	0.30772	0.00016227	-0.068157	-3.594E-05	0.23957	0.00012633	527.31301188662	76.683	0.75	76.736	76.398	77.148	0.053421					65	26	3	0	0	0	0.26638	1	19774	19774		30.637	5.2372	1	397690			53359	1023	30563	30564	65283	65283					0.08756066934347473
VPDSVTPLII	10	Unmodified	_VPDSVTPLII_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7764282226562	2	527.313158	1052.61176	0.69435	0.00036614	-0.52965	-0.00027929	0.16469	8.6844E-05	527.3126354916358	76.789	0.7052	76.757	76.395	77.1	-0.031487					61	25	3	0	0	0	0.26638	1	19784	19784		30.637	5.2372	1	390040			53360	1023	30563	30564	65284	65284					0.08756066934347473
VPDTSRIYV	9	Unmodified	_VPDTSRIYV_					0	0	0		nc|ENSG00000126756|Q9UBK9-2|UXT;ENSG00000126756|ENST00000333119|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.802978515625	2	525.284931	1048.55531	0.49562	0.00026034	0.12844	6.7468E-05	0.62406	0.00032781	525.2849112239214	43.02	0.84278	43.02	42.652	43.494	0					88	30	4	0	0	0	0.07848	1	9376	9376		42.312	12.472	1	1408900			53361	3286	30564	30565	65285	65285					0.032974390976505674
VPDTSRIYV	9	Unmodified	_VPDTSRIYV_					0	0	0		nc|ENSG00000126756|Q9UBK9-2|UXT;ENSG00000126756|ENST00000333119|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2852172851562	2	525.284931	1048.55531	0.43568	0.00022886	0.053106	2.7896E-05	0.48879	0.00025675	525.284878497576	42.832	1.2585	42.917	42.539	43.798	0.085197					107	45	4	0	0	0	0.052436	1	9327	9327		74.2	22.57	1	1314400			53362	3286	30564	30565	65286	65286					0.032974390976505674
VPDTSRIYV	9	Unmodified	_VPDTSRIYV_					0	0	0		nc|ENSG00000126756|Q9UBK9-2|UXT;ENSG00000126756|ENST00000333119|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.802978515625	2	525.284931	1048.55531	0.33805	0.00017757	0.12695	6.6685E-05	0.465	0.00024426	525.2849233919144	42.734	1.299	42.826	42.499	43.798	0.091362					106	47	4	0	0	0	0.19905	1	9248	9248		23.79	1.0535	1	1154600			53363	3286	30564	30565	65287	65287					0.032974390976505674
VPDTSRIYVAL	11	Unmodified	_VPDTSRIYVAL_					0	0	0		nc|ENSG00000126756|Q9UBK9-2|UXT;ENSG00000126756|ENST00000333119|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	617.3455200195312	2	617.34552	1232.67649	0.30262	0.00018682	-0.087832	-5.4223E-05	0.21479	0.0001326	617.345406454795	58.579	1.3453	58.579	58.187	59.533	0					152	46	5	0	0	0	5.4554E-06	4	14247	14154;14202;14247;14295		128.58	88.629	1	5571600			53364	3286	30565	30566	65288;65289;65290;65291	65290					0.06945641740321662
VPDTSRIYVAL	11	Unmodified	_VPDTSRIYVAL_					0	0	0		nc|ENSG00000126756|Q9UBK9-2|UXT;ENSG00000126756|ENST00000333119|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	617.3455810546875	2	617.34552	1232.67649	0.19508	0.00012043	0.041423	2.5572E-05	0.23651	0.00014601	617.3454656167877	58.442	1.3702	58.533	58.117	59.488	0.091301					160	48	5	0	0	0	1.9818E-05	4	14185	14093;14137;14185;14234		115.06	75.109	1	5559900			53365	3286	30565	30566	65292;65293;65294;65295	65294					0.06945641740321662
VPDTSRIYVAL	11	Unmodified	_VPDTSRIYVAL_					0	0	0		nc|ENSG00000126756|Q9UBK9-2|UXT;ENSG00000126756|ENST00000333119|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	nc|ENSG00000126756|Q9UBK9-2|UXT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	617.3455200195312	2	617.34552	1232.67649	0.48733	0.00030085	-0.29318	-0.00018099	0.19415	0.00011986	617.3452851774006	58.544	1.3467	58.53	58.141	59.488	-0.014267					156	47	4	0	0	0	1.9818E-05	5	14191	14144;14191;14230;14280;14332		115.06	75.476	1	5773800			53366	3286	30565	30566	65296;65297;65298;65299;65300	65297					0.06945641740321662
VPDVEHVQDI	10	Unmodified	_VPDVEHVQDI_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7916259765625	2	575.790578	1149.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.48	1	114.48	113.98	114.98	0								0	0	0	0.37157	1	29701	29701		5.7319	1.5423	1				53367	12881	30566	30567	65301	65301					-0.002197835988454244
VPDVEHVQDI	10	Unmodified	_VPDVEHVQDI_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7913208007812	2	575.790578	1149.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.33	1	119.33	118.83	119.83	0								0	0	0	0.37157	1	30795	30795		5.7319	1.5423	1				53368	12881	30566	30567	65302	65302					-0.002197835988454244
VPDVEHVQDI	10	Unmodified	_VPDVEHVQDI_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7919921875	2	575.790578	1149.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.03	1	113.01	112.51	113.51	-0.017303								0	0	0	0.37157	1	29389	29389		5.7319	1.5423	1				53369	12881	30566	30567	65303	65303					-0.002197835988454244
VPDVEHVQDI	10	Unmodified	_VPDVEHVQDI_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7911987304688	2	575.790578	1149.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.28	1	113.26	112.76	113.76	-0.017303								0	0	0	0.37157	1	29450	29450		5.7319	1.5423	1				53370	12881	30566	30567	65304	65304					-0.002197835988454244
VPDVEHVQDI	10	Unmodified	_VPDVEHVQDI_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7913818359375	2	575.790578	1149.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.58	1	113.59	113.09	114.09	0.014824								0	0	0	0.37157	1	29547	29547		5.7319	2.1354	1				53371	12881	30566	30567	65305	65305					-0.002197835988454244
VPDVQKQGK	9	Unmodified	_VPDVQKQGK_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2751159667969	2	499.785099	997.555644	0.52993	0.00026485	0.1615	8.0713E-05	0.69143	0.00034557	499.785100803546	51.36	0.37247	51.36	51.108	51.481	0					19	13	2	0	0	0	0.24913	1	11980	11980		4.3292	0	1	214110	+		53372	18449	30567	30568	65306	65306					0.05676858817525954
VPEEARPAL	9	Unmodified	_VPEEARPAL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2720642089844	2	491.271824	980.529095	0.68193	0.00033501	-0.59785	-0.00029371	0.084082	4.1307E-05	491.2714015021683	34.052	0.63828	34.052	33.78	34.418	0					38	22	2	0	0	0	0.014206	1	6660	6660		72.968	48.947	1	437310			53373	3608	30568	30569	65307	65307					0.03805169926170038
VPEEARPAL	9	Unmodified	_VPEEARPAL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.27203369140625	2	491.271824	980.529095	0.89182	0.00043812	-0.71458	-0.00035105	0.17724	8.7073E-05	491.2713542026251	33.874	0.67004	33.94	33.704	34.374	0.06636					39	23	2	0	0	0	0.074552	1	6631	6631		43.772	28.934	1	476400			53374	3608	30568	30569	65308	65308					0.03805169926170038
VPEEARPAL	9	Unmodified	_VPEEARPAL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2720642089844	2	491.271824	980.529095	0.19802	9.728E-05	-0.22254	-0.00010933	-0.02452	-1.2046E-05	491.2716009425565	33.823	0.64066	33.889	33.685	34.326	0.066704					37	22	2	0	0	0	0.012386	1	6612	6612		75.761	43.455	1	448970			53375	3608	30568	30569	65309	65309					0.03805169926170038
VPEELEEQEE	10	Unmodified	_VPEELEEQEE_					0	0	0			REV__ENST00000512390.1_1_5:141033519-141041645:-|nuORF	REV__ENST00000512390.1_1_5:141033519-141041645:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.555419921875	3	410.850591	1229.52994	0.18075	7.4262E-05	3.0274	0.0012438	3.2081	0.0013181	410.8520633898401	29.643	0.24223	29.656	29.532	29.774	0.012266					10	7	2	0	0	0	0.32033	1	5337	5337		2.086	0	1	38109	+		53376	15080	30569	30570	65310	65310					-0.07564125006047107
VPEERQSTVK	10	Unmodified	_VPEERQSTVK_					0	0	0		ENST00000477401.5_1_7:14660999-14880939:-|nuORF;ENST00000403963.5_1_7:14249142-14880939:-|nuORF;nc|ENSG00000136267|Q9Y6T7-2|DGKB;ENSG00000136267|ENST00000402815|DGKB;nc|ENSG00000136267|Q9Y6T7|DGKB	ENST00000477401.5_1_7:14660999-14880939:-|nuORF	ENST00000477401.5_1_7:14660999-14880939:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.833740234375	2	586.817127	1171.6197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.043	1	80.043	79.543	80.543	0								0	0	0	0.36711	1	20785	20785		7.609	0.88579	1				53377	3963	30570	30571	65311	65311					0.04075594183791509
VPEINVLEVM	10	Unmodified	_VPEINVLEVM_					0	0	0			REV__ENST00000557445.1_1_14:53570389-53619075:-|nuORF	REV__ENST00000557445.1_1_14:53570389-53619075:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7957153320312	2	571.809925	1141.6053	0.46564	0.00026626	-2.1479	-0.0012282	-1.6823	-0.00096196	571.8087009754348	53.718	0.37926	53.718	53.595	53.974	0					17	13	2	0	0	0	0.25219	1	12765	12765		26.268	5.8536	1	126110	+		53378	14206	30571	30572	65312	65312					0.04015805711287612
VPEPLDRLYLK	11	Unmodified	_VPEPLDRLYLK_					0	0	0			REV__nc|ENSG00000163219|P42331-2|ARHGAP25	REV__nc|ENSG00000163219|P42331-2|ARHGAP25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7509460449219	3	448.262489	1341.76564	0.43764	0.00019618	3.247	0.0014555	3.6846	0.0016517	448.5981728814245	20.904	0.082355	20.852	20.779	20.861	-0.05291					4	2	2	0	0	0	0.33263	1	2671	2671		2.084	0.49169	1	11936	+		53379	17044	30572	30573	65313	65313					0.10842476699826875
VPEPPSKKSG	10	Unmodified	_VPEPPSKKSG_					0	0	0			REV__ENSG00000182095|ENST00000430969|TNRC18	REV__ENSG00000182095|ENST00000430969|TNRC18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.81103515625	2	513.284931	1024.55531	0.25284	0.00012978	-0.21768	-0.00011173	0.03516	1.8047E-05	513.2851460082835	27.113	0.36651	27.113	26.871	27.237	0					20	12	2	0	0	0	0.32054	1	4510	4510		3.2813	0.70383	1	51674	+		53380	18177	30573	30574	65314	65314					0.04401439097682669
VPERLLVVL	9	Unmodified	_VPERLLVVL_					0	0	0		ENSG00000111671|ENST00000524270|SPSB2;nc|ENSG00000111671|Q99619-2|SPSB2	ENSG00000111671|ENST00000524270|SPSB2	ENSG00000111671|ENST00000524270|SPSB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3397827148438	2	519.33951	1036.66447	0.59561	0.00030932	0.21426	0.00011127	0.80987	0.0004206	519.3394237160144	78.419	1.6917	78.477	78.164	79.856	0.058151					155	68	4	0	0	0	0.086462	1	20302	20302		40.239	3.733	1	2868900			53381	2380	30574	30575	65315	65315					0.1476006978782607
VPERYFPE	8	Unmodified	_VPERYFPE_					0	0	0		nc|ENSG00000163291|Q6TCH7-3|PAQR3;nc|ENSG00000163291|Q6TCH7-2|PAQR3	nc|ENSG00000163291|Q6TCH7-3|PAQR3	nc|ENSG00000163291|Q6TCH7-3|PAQR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.3214111328125	2	518.758549	1035.50255	0.46894	0.00024327	0.80273	0.00041642	1.2717	0.00065969	519.2601270756206	57.534	0.99728	57.534	57.19	58.187	0					56	35	3	0	0	0	0.33661	1	13961	13961		13.906	0	1	570240			53382	12795	30575	30576	65316	65316					-0.013785189651343899
VPEVVLNL	8	Unmodified	_VPEVVLNL_					0	0	0		ENSG00000268089|ENST00000598523|GABRQ	ENSG00000268089|ENST00000598523|GABRQ	ENSG00000268089|ENST00000598523|GABRQ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7683410644531	2	441.768386	881.522219	0.19483	8.6071E-05	-0.034574	-1.5274E-05	0.16026	7.0798E-05	441.76812286651284	41.099	1.8638	41.189	39.775	41.639	0.090252					179	68	4	0	0	0	0.27124	1	8925	8925		34.102	1.797	1	930600			53383	8684	30576	30577	65317	65317					0.07671857045602337
VPFAAPATATI	11	Unmodified	_VPFAAPATATI_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF;nc|ENSG00000163694|A0AV96-2|RBM47	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.7980346679688	2	529.797675	1057.5808	0.74555	0.00039499	-0.69559	-0.00036852	0.049963	2.647E-05	529.79739391984	64.301	0.6471	64.301	64.026	64.673	0					45	23	2	0	0	0	5.223E-09	2	15957	15957;16006		149.99	91.316	1	1104700			53384	5722	30577	30578	65318;65319	65318					0.05430913620079991
VPFAAPATATI	11	Unmodified	_VPFAAPATATI_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF;nc|ENSG00000163694|A0AV96-2|RBM47	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.798095703125	2	529.797675	1057.5808	0.55868	0.00029599	-0.51758	-0.00027421	0.041106	2.1778E-05	529.7974577429594	64.196	0.70216	64.289	63.986	64.688	0.09288					47	25	2	0	0	0	5.2501E-13	2	15923	15923;15977		172.91	122.97	1	1038600			53385	5722	30577	30578	65320;65321	65320					0.05430913620079991
VPFAAPATATI	11	Unmodified	_VPFAAPATATI_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF;nc|ENSG00000163694|A0AV96-2|RBM47	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.798095703125	2	529.797675	1057.5808	0.69937	0.00037052	-0.56782	-0.00030083	0.13155	6.9694E-05	529.7974942410059	64.297	0.67465	64.287	64.017	64.691	-0.0095291					59	24	3	0	0	0	5.223E-09	2	15939	15939;15987		149.99	91.316	1	994350			53386	5722	30577	30578	65322;65323	65322					0.05430913620079991
VPFAWGLLL	9	Unmodified	_VPFAWGLLL_					0	0	0			REV__ENST00000458005.2_1_17:9738090-9769219:+|nuORF	REV__ENST00000458005.2_1_17:9738090-9769219:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7637634277344	2	508.302396	1014.59024	0.31257	0.00015888	-1.3499	-0.00068616	-1.0373	-0.00052728	508.3017194620809	51.878	0.27203	51.929	51.788	52.06	0.050575					12	9	2	0	0	0	0.24542	1	12137	12137		14.582	2.0501	1	118070	+		53387	13661	30578	30579	65324	65324					0.08352726696284662
VPFAWGLLL	9	Unmodified	_VPFAWGLLL_					0	0	0			REV__ENST00000458005.2_1_17:9738090-9769219:+|nuORF	REV__ENST00000458005.2_1_17:9738090-9769219:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.302396	1014.59024	0.18834	9.5736E-05	-1.4135	-0.0007185	-1.2252	-0.00062276	508.3018415951461	51.723	0.32347	51.732	51.641	51.964	0.0095634	-0.098419	-2.5808E-05	NaN	14.582	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184010	+		53388	13661	30578	30579							0.08352726696284662
VPFEGSRSV	9	Unmodified	_VPFEGSRSV_					0	0	0			REV__ENSG00000188807|ENST00000340381|TMEM201	REV__ENSG00000188807|ENST00000340381|TMEM201	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.77679443359375	2	489.256174	976.497795	0.758	0.00037086	-0.19747	-9.6613E-05	0.56053	0.00027424	489.25610721723865	36.484	0.5733	36.57	36.371	36.944	0.08625					29	20	2	0	0	0	0.24688	1	7397	7397		6.2058	0	1	114020	+		53389	18572	30579	30580	65325	65325					0.008605968921074236
VPFEQILSL	9	Unmodified	_VPFEQILSL_					0	0	0		ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1	ENSG00000185043|ENST00000328649|CIB1	ENSG00000185043|ENST00000328649|CIB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3004760742188	2	523.30005	1044.58555	0.64154	0.00033572	0.69761	0.00036506	1.3392	0.00070078	523.3003679395734	87.623	1.6623	87.623	86.883	88.545	0					198	80	4	0	0	0	0.0028626	2	23112	23068;23112		103.35	10.862	1	2504400			53390	7501	30580	30581	65326;65327	65327					0.0650379776286627
VPFHDSIAL	9	Unmodified	_VPFHDSIAL_					0	0	0			REV__nc|ENSG00000167968|Q92874-2|DNASE1L2	REV__nc|ENSG00000167968|Q92874-2|DNASE1L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2591857910156	2	499.768917	997.523281	0.82192	0.00041077	0.54834	0.00027404	1.3703	0.00068481	499.7690705115016	55.836	0.30997	55.836	55.682	55.992	0					17	10	2	0	0	0	0.23783	1	13354	13354		18.135	4.6271	1	508470	+		53391	17423	30581	30582	65328	65328					0.02442071414509428
VPFHRVDTI	9	Unmodified	_VPFHRVDTI_					0	0	0		nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;ENST00000577691.5_1_17:18387201-18397610:+|nuORF;nc|ENSG00000168961|O00182-4|LGALS9;ENST00000579930.5_1_17:25958249-25969437:+|nuORF	nc|ENSG00000168961|O00182-3|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.3011474609375	2	542.300916	1082.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.542	1	35.542	35.042	36.042	0								0	0	0	1.2188E-06	1	7128	7128		129.77	44.5	1				53392	6317	30582	30583	65329	65329					0.049288515714806636
VPFHRVDTI	9	Unmodified	_VPFHRVDTI_					0	0	0		nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;ENST00000577691.5_1_17:18387201-18397610:+|nuORF;nc|ENSG00000168961|O00182-4|LGALS9;ENST00000579930.5_1_17:25958249-25969437:+|nuORF	nc|ENSG00000168961|O00182-3|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.3004760742188	2	542.300916	1082.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.702	1	35.702	35.202	36.202	0								0	0	0	0.047655	1	7177	7177		61.602	11.669	1				53393	6317	30582	30583	65330	65330					0.049288515714806636
VPFHRVDTI	9	Unmodified	_VPFHRVDTI_					0	0	0		nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;ENST00000577691.5_1_17:18387201-18397610:+|nuORF;nc|ENSG00000168961|O00182-4|LGALS9;ENST00000579930.5_1_17:25958249-25969437:+|nuORF	nc|ENSG00000168961|O00182-3|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3006591796875	2	542.300916	1082.58728	0.32077	0.00017395	0.67694	0.00036711	0.99771	0.00054106	542.3008546821142	35.376	0.95947	35.452	35.123	36.083	0.075306					131	34	5	0	0	0	0.0033458	1	7039	7039		99.755	61.58	1	2369200			53394	6317	30582	30583	65331	65331					0.049288515714806636
VPFHRVDTI	9	Unmodified	_VPFHRVDTI_					0	0	0		nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;ENST00000577691.5_1_17:18387201-18397610:+|nuORF;nc|ENSG00000168961|O00182-4|LGALS9;ENST00000579930.5_1_17:25958249-25969437:+|nuORF	nc|ENSG00000168961|O00182-3|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3011474609375	2	542.300916	1082.58728	0.027434	1.4877E-05	0.63643	0.00034514	0.66387	0.00036002	542.3010235100412	35.373	1.1699	35.45	34.78	35.949	0.077381					120	41	4	0	0	0	0.003317	2	7079	7079;7125		99.755	54.015	1	2528700			53395	6317	30582	30583	65332;65333	65332					0.049288515714806636
VPFIGLSMV	9	Oxidation (M)	_VPFIGLSM(Oxidation (M))V_		VPFIGLSM(1)V		VPFIGLSM(71)V	0	0	1		ENSG00000180785|ENST00000396952|OR51E1	ENSG00000180785|ENST00000396952|OR51E1	ENSG00000180785|ENST00000396952|OR51E1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.3367919921875	2	489.770071	977.52559	0.25759	0.00012616	-0.39057	-0.00019129	-0.13297	-6.5127E-05	489.76963587438934	75.716	0.65252	75.768	75.536	76.188	0.052361					44	23	2	0	0	0	0.012601	1	19452	19452		70.716	70.716	1	1022500			53396	7201	30583	30584	65334	65334		804			0.035927838279803836
VPFIGLSMV	9	Oxidation (M)	_VPFIGLSM(Oxidation (M))V_		VPFIGLSM(1)V		VPFIGLSM(71)V	0	0	1		ENSG00000180785|ENST00000396952|OR51E1	ENSG00000180785|ENST00000396952|OR51E1	ENSG00000180785|ENST00000396952|OR51E1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.7699890136719	2	489.770071	977.52559	0.36606	0.00017928	-1.1111	-0.0005442	-0.74506	-0.00036491	489.76895011214305	75.952	1.762	75.92	75.525	77.287	-0.031487					82	64	2	0	0	0	0.015674	1	19505	19505		70.716	42.229	1	965610			53397	7201	30583	30584	65335	65335		804			0.035927838279803836
VPFIGRYL	8	Unmodified	_VPFIGRYL_					0	0	0			REV__ENST00000565143.1_1_15:72491993-72493046:-|nuORF	REV__ENST00000565143.1_1_15:72491993-72493046:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7841491699219	2	482.78437	963.554188	0.44008	0.00021247	0.22153	0.00010695	0.66161	0.00031942	482.78446000410713	66.017	1.6142	66.101	65.541	67.156	0.083832					152	58	3	0	0	0	0.42446	1	16680	16680		14.582	2.0501	1	12245000	+		53398	13688	30584	30585	65336	65336					0.07095269519413705
VPFLNPYTVQA	11	Unmodified	_VPFLNPYTVQA_					0	0	0		nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000121988|ENST00000264159|ZRANB3;nc|ENSG00000121988|Q5FWF4-4|ZRANB3;nc|ENSG00000121988|Q5FWF4-2|ZRANB3;ENST00000403017.2_1_2:135957914-136028945:-|nuORF	nc|ENSG00000121988|Q5FWF4-3|ZRANB3	nc|ENSG00000121988|Q5FWF4-3|ZRANB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.8345336914062	2	624.834788	1247.65502	0.15417	9.6329E-05	-0.7776	-0.00048587	-0.62343	-0.00038954	624.8341468001604	79.313	0.48718	79.374	79.182	79.669	0.061417					46	21	3	0	0	0	0.46475	1	20534	20534		2.7352	1.2533	1	297460			53399	3025	30585	30586	65337	65337					0.04110256711624061
VPFLVSVL	8	Unmodified	_VPFLVSVL_					0	0	0		ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.25738525390625	2	437.275847	872.537141	0.13466	5.8884E-05	-1.512	-0.00066117	-1.3774	-0.00060228	437.27473467173155	88.718	0.65965	88.718	88.451	89.111	0					50	30	3	0	0	0	0.33245	1	23475	23475		19.439	4.8573	1	263060			53400	7294	30586	30587	65338	65338					0.09577348913614969
VPFLVSVL	8	Unmodified	_VPFLVSVL_					0	0	0		ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.25732421875	2	437.275847	872.537141	0.10865	4.7512E-05	-1.0839	-0.00047396	-0.97523	-0.00042645	437.27494314305426	88.582	0.57456	88.671	88.37	88.944	0.089195					56	24	3	0	0	0	0.29134	1	23388	23388		26.341	12.833	1	315580			53401	7294	30586	30587	65339	65339					0.09577348913614969
VPFLVSVL	8	Unmodified	_VPFLVSVL_					0	0	0		ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	ENSG00000182481|ENST00000330459|KPNA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2574157714844	2	437.275847	872.537141	0.10236	4.4759E-05	-1.1182	-0.00048896	-1.0158	-0.0004442	437.27496562547606	88.739	0.49738	88.736	88.476	88.973	-0.0028381					36	20	2	0	0	0	0.33245	1	23435	23435		19.439	4.8573	1	336460			53402	7294	30586	30587	65340	65340					0.09577348913614969
VPFPANIDI	9	Unmodified	_VPFPANIDI_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;ENST00000478484.5_1_2:27851925-27854072:+|nuORF	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2321472167969	2	493.271293	984.528032	0.1407	6.9401E-05	-0.24559	-0.00012114	-0.10489	-5.174E-05	493.27115698420727	76.008	0.60118	76.008	75.682	76.283	0					34	21	2	0	0	0	0.20167	1	19557	19557		29.082	12.139	1	151310			53403	8086	30587	30588	65341	65341					0.035149555572729696
VPFPANIDI	9	Unmodified	_VPFPANIDI_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;ENST00000478484.5_1_2:27851925-27854072:+|nuORF	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.27130126953125	2	493.271293	984.528032	0.29377	0.00014491	-0.25591	-0.00012624	0.03786	1.8675E-05	493.27076143772797	75.966	0.69623	76.02	75.702	76.398	0.053413					33	24	2	0	0	0	0.20626	1	19519	19519		22.736	8.8302	1	179210			53404	8086	30587	30588	65342	65342					0.035149555572729696
VPFPANIDI	9	Unmodified	_VPFPANIDI_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;ENST00000478484.5_1_2:27851925-27854072:+|nuORF	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.27105712890625	2	493.271293	984.528032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.031	1	76	75.5	76.5	-0.031487								0	0	0	0.17427	1	19549	19549		29.082	5.9332	1				53405	8086	30587	30588	65343	65343					0.035149555572729696
VPFPDTYEI	9	Unmodified	_VPFPDTYEI_					0	0	0		ENST00000507678.5_1_4:177243228-177249478:+|nuORF;ENSG00000129128|ENST00000503362|SPCS3	ENST00000507678.5_1_4:177243228-177249478:+|nuORF	ENST00000507678.5_1_4:177243228-177249478:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7389526367188	2	540.76604	1079.51753	0.48371	0.00026157	-0.21508	-0.00011631	0.26863	0.00014527	540.7655200956998	71.377	0.45518	71.438	71.117	71.573	0.060783					36	15	4	0	0	0	0.2451	1	18086	18086		15.847	0	1	355500			53406	3410	30588	30589	65344	65344					-0.019050718877906547
VPFPDTYEI	9	Unmodified	_VPFPDTYEI_					0	0	0		ENST00000507678.5_1_4:177243228-177249478:+|nuORF;ENSG00000129128|ENST00000503362|SPCS3	ENST00000507678.5_1_4:177243228-177249478:+|nuORF	ENST00000507678.5_1_4:177243228-177249478:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.7393798828125	2	540.76604	1079.51753	0.64345	0.00034796	-0.89758	-0.00048538	-0.25414	-0.00013743	540.7652878206629	71.461	0.4696	71.434	71.1	71.57	-0.027267					30	16	3	0	0	0	0.17611	1	18180	18180		26.884	2.2098	1	393930			53407	3410	30588	30589	65345	65345					-0.019050718877906547
VPFPEGFVI	9	Unmodified	_VPFPEGFVI_					0	0	0		nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;NSUN2|p.V238Wfs*14|1|0.3|ENSG00000037474|chr5:6620209-6620209|C/-|frameshift_variant	nc|ENSG00000037474|Q08J23-2|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.77685546875	2	502.776211	1003.53787	0.5117	0.00025727	0.68057	0.00034218	1.1923	0.00059945	502.77686207325087	87.045	1.4241	87.045	86.527	87.951	0					138	62	3	0	0	0	0.25314	1	22841	22841		15.847	2.8047	1	1234200			53408	585	30589	30590	65346	65346					0.0362414356266072
VPFPEGFVI	9	Unmodified	_VPFPEGFVI_					0	0	0		nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;NSUN2|p.V238Wfs*14|1|0.3|ENSG00000037474|chr5:6620209-6620209|C/-|frameshift_variant	nc|ENSG00000037474|Q08J23-2|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.8144836425781	2	502.776211	1003.53787	0.46284	0.0002327	0.89753	0.00045126	1.3604	0.00068396	502.77698246581275	87.021	1.3604	87.016	86.505	87.865	-0.0056229					142	62	3	0	0	0	0.22596	1	22928	22928		21.747	3.6117	1	1460800			53409	585	30589	30590	65347	65347					0.0362414356266072
VPFPKFRFI	9	Unmodified	_VPFPKFRFI_					0	0	0		nc|ENSG00000170222|Q3LIE5-3|ADPRM;ENSG00000170222|ENST00000379774|ADPRM	nc|ENSG00000170222|Q3LIE5-3|ADPRM	nc|ENSG00000170222|Q3LIE5-3|ADPRM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8432006835938	2	575.84222	1149.66989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.11	1	114.1	113.6	114.6	-0.019096								0	0	0	0.26334	1	29645	29645		2.0598	0	1				53410	6432	30590	30591	65348	65348					0.10103793370262792
VPFPKNFQQV	10	Unmodified	_VPFPKNFQQV_					0	0	0		ENSG00000142961|ENST00000319928|MOB3C	ENSG00000142961|ENST00000319928|MOB3C	ENSG00000142961|ENST00000319928|MOB3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.3297729492188	2	602.329673	1202.64479	0.54436	0.00032788	-0.078783	-4.7453E-05	0.46558	0.00028043	602.3295789733166	52.627	0.52357	52.627	52.382	52.906	0					45	18	4	0	0	0	0.0042359	1	12364	12364		96.111	70.712	1	858030			53411	4473	30591	30592	65349	65349					0.051576937770278164
VPFPKNFQQV	10	Unmodified	_VPFPKNFQQV_					0	0	0		ENSG00000142961|ENST00000319928|MOB3C	ENSG00000142961|ENST00000319928|MOB3C	ENSG00000142961|ENST00000319928|MOB3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.329833984375	2	602.329673	1202.64479	0.64361	0.00038767	-0.030398	-1.831E-05	0.61321	0.00036936	602.3295653867197	52.585	0.57148	52.636	52.389	52.96	0.050575					46	20	3	0	0	0	0.0075758	1	12373	12373		85.272	52.486	1	781230			53412	4473	30591	30592	65350	65350					0.051576937770278164
VPFPKNFQQV	10	Unmodified	_VPFPKNFQQV_					0	0	0		ENSG00000142961|ENST00000319928|MOB3C	ENSG00000142961|ENST00000319928|MOB3C	ENSG00000142961|ENST00000319928|MOB3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3297119140625	2	602.329673	1202.64479	0.30792	0.00018547	0.23082	0.00013903	0.53873	0.0003245	602.3296694257755	52.75	0.56952	52.749	52.495	53.065	-0.00080872					45	20	3	0	0	0	0.0075758	1	12383	12383		85.272	59.004	1	785540			53413	4473	30591	30592	65351	65351					0.051576937770278164
VPFQLLTSLMD	11	Unmodified	_VPFQLLTSLMD_					0	0	0		ENSG00000151790|ENST00000536354|TDO2;ENST00000510293.1_1_4:156835507-156839956:+|nuORF	ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.20477294921875	3	421.893297	1262.65806	0.067112	2.8314E-05	1.0578	0.00044628	1.1249	0.00047459	421.8937978802469	30.162	0.42108	30.19	29.933	30.354	0.027946					24	14	2	0	0	0	0.33236	1	5505	5505		4.4062	1.671	1	83716			53414	4985	30592	30593	65352	65352					0.037237637741100116
VPFRHLLLV	9	Unmodified	_VPFRHLLLV_					0	0	0		ENSG00000010610|ENST00000011653|CD4	ENSG00000010610|ENST00000011653|CD4	ENSG00000010610|ENST00000011653|CD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.3477783203125	2	547.347669	1092.68079	0.5588	0.00030586	0.058131	3.1818E-05	0.61693	0.00033768	547.3475016315302	57.035	0.67202	57.035	56.823	57.495	0					54	24	3	0	0	0	0.07432	1	13731	13731		43.858	28.011	1	873260			53415	425	30593	30594	65353	65353					0.13815195744564335
VPFRHLLLV	9	Unmodified	_VPFRHLLLV_					0	0	0		ENSG00000010610|ENST00000011653|CD4	ENSG00000010610|ENST00000011653|CD4	ENSG00000010610|ENST00000011653|CD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.3480224609375	2	547.347669	1092.68079	0.55817	0.00030551	0.020179	1.1045E-05	0.57835	0.00031656	547.3475036352473	56.881	0.60881	56.96	56.756	57.365	0.078671					55	22	3	0	0	0	0.07432	1	13702	13702		43.858	26.916	1	737750			53416	425	30593	30594	65354	65354					0.13815195744564335
VPFRHLLLV	9	Unmodified	_VPFRHLLLV_					0	0	0		ENSG00000010610|ENST00000011653|CD4	ENSG00000010610|ENST00000011653|CD4	ENSG00000010610|ENST00000011653|CD4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	547.347669	1092.68079	0.53597	0.00029336	-0.060875	-3.332E-05	0.47509	0.00026004	547.3474986574689	57.101	0.63118	57.081	56.838	57.469	-0.019081	0.056122	-5.7088E-05	NaN	43.858	55	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	931470			53417	425	30593	30594							0.13815195744564335
VPFSHVNI	8	Unmodified	_VPFSHVNI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7505798339844	2	456.750527	911.486502	0.37833	0.0001728	0.042675	1.9492E-05	0.421	0.00019229	456.75044897771187	47.374	0.65924	47.374	47.112	47.771	0					67	23	4	0	0	0	0.029748	2	10789	10738;10789		88.904	44.497	1	2496300			53418	3320	30594	30595	65355;65356	65356					0.027218195886121066
VPFSHVNI	8	Unmodified	_VPFSHVNI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7506103515625	2	456.750527	911.486502	0.17116	7.8178E-05	0.23141	0.0001057	0.40257	0.00018388	456.75055086201354	47.333	0.68887	47.386	47.088	47.777	0.05257					71	25	4	0	0	0	0.029748	2	10702	10702;10749		88.904	44.497	1	2575900			53419	3320	30594	30595	65357;65358	65357					0.027218195886121066
VPFSHVNI	8	Unmodified	_VPFSHVNI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.750732421875	2	456.750527	911.486502	0.72294	0.0003302	-0.32658	-0.00014917	0.39635	0.00018103	456.7503093716683	47.324	0.66665	47.378	47.142	47.808	0.054371					62	24	3	0	0	0	0.021231	2	10751	10706;10751		100.37	46.796	1	2670100			53420	3320	30594	30595	65359;65360	65360					0.027218195886121066
VPFSHVNIV	9	Unmodified	_VPFSHVNIV_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2841796875	2	506.284734	1010.55492	0.26131	0.0001323	1.2261	0.00062073	1.4874	0.00075303	506.2851075295871	52.037	0.62486	52.037	51.729	52.354	0					78	22	5	0	0	0	0.074552	2	12170	12170;12196		43.772	19.099	1	2397600			53421	3320	30595	30596	65361;65362	65361					0.05006064168469493
VPFSHVNIV	9	Unmodified	_VPFSHVNIV_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2856750488281	2	506.284734	1010.55492	0.32224	0.00016314	1.1897	0.00060233	1.5119	0.00076547	506.285091759119	52.016	0.71417	52.066	51.703	52.417	0.050575					78	25	5	0	0	0	0.05341	2	12169	12157;12169		51.63	21.026	1	2318400			53422	3320	30595	30596	65363;65364	65364					0.05006064168469493
VPFSHVNIV	9	Unmodified	_VPFSHVNIV_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2856750488281	2	506.284734	1010.55492	0.093927	4.7554E-05	1.0517	0.00053247	1.1456	0.00058002	506.2848481385814	52.088	0.56387	52.087	51.876	52.44	-0.00081253					80	20	5	0	0	0	0.11201	4	12193	12185;12193;12231;12251		36.506	11.832	1	2119600			53423	3320	30595	30596	65365;65366;65367;65368	65366					0.05006064168469493
VPFSLDSV	8	Unmodified	_VPFSLDSV_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.2296142578125	2	432.229094	862.443634	-0.10643	-4.6003E-05	0.93048	0.00040218	0.82405	0.00035618	432.2295353758197	67.401	0.91608	67.401	67.106	68.022	0					55	31	3	0	0	0	0.10069	1	16904	16904		60.39	22.238	1	699980			53424	7281	30596	30597	65369	65369					0.006910047405199293
VPFSLDSV	8	Unmodified	_VPFSLDSV_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.22955322265625	2	432.229094	862.443634	-0.041322	-1.7861E-05	0.97514	0.00042148	0.93381	0.00040362	432.22960081396064	67.276	0.93493	67.354	67.04	67.975	0.078041					60	32	3	0	0	0	0.13961	2	16859	16859;16910		53.576	9.1686	1	560290			53425	7281	30596	30597	65370;65371	65370					0.006910047405199293
VPFSLDSV	8	Unmodified	_VPFSLDSV_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	432.229094	862.443634	-0.19261	-8.3253E-05	1.2608	0.00054494	1.0682	0.00046169	432.2297000546191	67.44	0.98157	67.423	67.035	68.017	-0.016296	0.030693	0.00019914	NaN	60.39	61	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	649790			53426	7281	30596	30597							0.006910047405199293
VPFSLMQV	8	Oxidation (M)	_VPFSLM(Oxidation (M))QV_		VPFSLM(1)QV		VPFSLM(160)QV	0	0	1		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.7468566894531	2	468.746596	935.478639	0.27813	0.00013037	0.6629	0.00031073	0.94103	0.0004411	468.7467072293188	64.297	1.4922	64.297	63.826	65.319	0					107	54	3	0	0	0	7.4529E-06	4	15995	15902;15948;15995;16050		164.52	59.716	1	2523700			53427	2232	30597	30598	65372;65373;65374;65375	65374		275			0.008319242768379809
VPFSLMQV	8	Oxidation (M)	_VPFSLM(Oxidation (M))QV_		VPFSLM(1)QV		VPFSLM(180)QV	0	0	1		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7469482421875	2	468.746596	935.478639	0.25183	0.00011804	0.47039	0.00022049	0.72222	0.00033854	468.7467019502392	64.166	1.1681	64.259	63.794	64.962	0.09288					105	42	4	0	0	0	6.2848E-08	4	15918	15867;15918;15965;16016		180.01	62.411	1	2601200			53428	2232	30597	30598	65376;65377;65378;65379	65377		275			0.008319242768379809
VPFSLMQV	8	Oxidation (M)	_VPFSLM(Oxidation (M))QV_		VPFSLM(1)QV		VPFSLM(150)QV	0	0	1		ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.74688720703125	2	468.746596	935.478639	0.42512	0.00019927	0.51227	0.00024013	0.93739	0.0004394	468.74662916908744	64.245	1.2281	64.236	63.822	65.05	-0.0095291					94	44	3	0	0	0	0.00054609	3	15927	15927;15978;16025		149.99	57.172	1	2471700			53429	2232	30597	30598	65380;65381;65382	65380		275			0.008319242768379809
VPFSRPPL	8	Unmodified	_VPFSRPPL_					0	0	0		nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A;nc|ENSG00000172824|Q5XG92-2|CES4A;ENSG00000172824|ENST00000648724|CES4A	nc|ENSG00000172824|Q5XG92-5|CES4A	nc|ENSG00000172824|Q5XG92-5|CES4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.300537109375	2	456.76872	911.522887	0.42143	0.0001925	-0.14403	-6.5788E-05	0.2774	0.00012671	456.76829502584206	46.957	0.37644	46.957	46.76	47.137	0					23	12	2	0	0	0	0.27906	1	10610	10610		34.402	14.963	1	468280			53430	6665	30598	30599	65383	65383					0.06358696485335713
VPFSRPPL	8	Unmodified	_VPFSRPPL_					0	0	0		nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A;nc|ENSG00000172824|Q5XG92-2|CES4A;ENSG00000172824|ENST00000648724|CES4A	nc|ENSG00000172824|Q5XG92-5|CES4A	nc|ENSG00000172824|Q5XG92-5|CES4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.300537109375	2	456.76872	911.522887	0.47368	0.00021636	-0.65674	-0.00029998	-0.18306	-8.3617E-05	456.7679989668109	46.888	0.40861	46.942	46.709	47.117	0.054371					24	13	2	0	0	0	0.27906	1	10576	10576		27.629	8.1898	1	405080			53431	6665	30598	30599	65384	65384					0.06358696485335713
VPFSRPPL	8	Unmodified	_VPFSRPPL_					0	0	0		nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A;nc|ENSG00000172824|Q5XG92-2|CES4A;ENSG00000172824|ENST00000648724|CES4A	nc|ENSG00000172824|Q5XG92-5|CES4A	nc|ENSG00000172824|Q5XG92-5|CES4A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	456.76872	911.522887	0.23894	0.00010914	-0.52723	-0.00024082	-0.28829	-0.00013168	456.76801988235786	46.859	0.463	46.911	46.679	47.142	0.052574	-0.025618	-6.1886E-05	NaN	34.402	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361710			53432	6665	30598	30599							0.06358696485335713
VPFSVPKI	8	Unmodified	_VPFSVPKI_					0	0	0		nc|ENSG00000068079|P80217-2|IFI35;ENSG00000068079|ENST00000415816|IFI35;ENST00000246911.6_1_17:41158964-41165399:+|nuORF	nc|ENSG00000068079|P80217-2|IFI35	nc|ENSG00000068079|P80217-2|IFI35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.7734375	2	443.773471	885.53239	0.35461	0.00015737	-0.10101	-4.4825E-05	0.2536	0.00011254	443.7733107432345	58.413	1.7106	58.413	57.798	59.508	0					127	59	4	0	0	0	0.011048	3	14166	14117;14166;14214		115.69	66.023	1	3540700			53433	875	30599	30600	65385;65386;65387	65386					0.08504464770851428
VPFSVPKI	8	Unmodified	_VPFSVPKI_					0	0	0		nc|ENSG00000068079|P80217-2|IFI35;ENSG00000068079|ENST00000415816|IFI35;ENST00000246911.6_1_17:41158964-41165399:+|nuORF	nc|ENSG00000068079|P80217-2|IFI35	nc|ENSG00000068079|P80217-2|IFI35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.7734375	2	443.773471	885.53239	0.19543	8.6726E-05	0.044937	1.9942E-05	0.24037	0.00010667	443.7733708463539	58.259	1.7421	58.344	57.686	59.429	0.085617					141	62	4	0	0	0	0.0045426	3	14113	14071;14113;14163		128.37	68.57	1	3429200			53434	875	30599	30600	65388;65389;65390	65389					0.08504464770851428
VPFSVPKI	8	Unmodified	_VPFSVPKI_					0	0	0		nc|ENSG00000068079|P80217-2|IFI35;ENSG00000068079|ENST00000415816|IFI35;ENST00000246911.6_1_17:41158964-41165399:+|nuORF	nc|ENSG00000068079|P80217-2|IFI35	nc|ENSG00000068079|P80217-2|IFI35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.77349853515625	2	443.773471	885.53239	0.62428	0.00027704	-0.37977	-0.00016853	0.24451	0.00010851	443.7731798022531	58.457	1.744	58.443	57.744	59.488	-0.014271					139	62	4	0	0	0	0.0045426	2	14168	14168;14219		128.37	77.51	1	3703500			53435	875	30599	30600	65391;65392	65391					0.08504464770851428
VPFSVPKIPL	10	Unmodified	_VPFSVPKIPL_					0	0	0		nc|ENSG00000068079|P80217-2|IFI35;ENSG00000068079|ENST00000415816|IFI35;ENST00000246911.6_1_17:41158964-41165399:+|nuORF	nc|ENSG00000068079|P80217-2|IFI35	nc|ENSG00000068079|P80217-2|IFI35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7874755859375	2	548.841885	1095.66922	0.51223	0.00028113	1.1328	0.00062173	1.645	0.00090286	548.8426380428589	72.558	0.45538	72.558	72.295	72.75	0					23	16	2	0	0	0	0.27086	1	18523	18523		32.037	23.444	1	138420			53436	875	30600	30601	65393	65393					0.12520953930561518
VPFSVPKIPL	10	Unmodified	_VPFSVPKIPL_					0	0	0		nc|ENSG00000068079|P80217-2|IFI35;ENSG00000068079|ENST00000415816|IFI35;ENST00000246911.6_1_17:41158964-41165399:+|nuORF	nc|ENSG00000068079|P80217-2|IFI35	nc|ENSG00000068079|P80217-2|IFI35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7874755859375	2	548.841885	1095.66922	0.60783	0.0003336	0.73072	0.00040105	1.3386	0.00073465	548.842461660619	72.606	0.42834	72.577	72.365	72.793	-0.029305					24	14	2	0	0	0	0.24727	1	18534	18534		32.037	12.598	1	126700			53437	875	30600	30601	65394	65394					0.12520953930561518
VPFVAPILT	9	Unmodified	_VPFVAPILT_					0	0	0			REV__ENST00000535942.5_1_13:20437646-20437724:-|nuORF	REV__ENST00000535942.5_1_13:20437646-20437724:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7856140136719	2	478.794404	955.574254	0.1676	8.0248E-05	0.24947	0.00011944	0.41707	0.00019969	478.794444558141	82.137	0.78187	82.206	81.992	82.774	0.068985					49	31	2	0	0	0	0.21137	1	21366	21366		7.9102	7.9102	1	640560	+		53438	22074	30601	30602	65395	65395					0.09469020459368949
VPFVGKVHI	9	Unmodified	_VPFVGKVHI_					0	0	0		nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1;ENSG00000131979|ENST00000491895|GCH1	nc|ENSG00000131979|P30793-3|GCH1	nc|ENSG00000131979|P30793-3|GCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.73077392578125	2	498.30547	994.596387	0.64384	0.00032083	0.79355	0.00039543	1.4374	0.00071626	498.3060008660371	47.81	0.7713	47.81	47.187	47.959	0					42	27	2	0	0	0	0.14099	1	10878	10878		42.095	13.608	1	1136900			53439	3601	30602	30603	65396	65396					0.0988724492780193
VPFVGKVHI	9	Unmodified	_VPFVGKVHI_					0	0	0		nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1;ENSG00000131979|ENST00000491895|GCH1	nc|ENSG00000131979|P30793-3|GCH1	nc|ENSG00000131979|P30793-3|GCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.73065185546875	2	498.30547	994.596387	0.69151	0.00034458	0.25555	0.00012734	0.94706	0.00047192	498.30589374689197	47.764	0.88778	47.811	47.214	48.101	0.04752					44	32	2	0	0	0	0.11486	1	10859	10859		48.346	21.462	1	911780			53440	3601	30602	30603	65397	65397					0.0988724492780193
VPGERLRAL	9	Unmodified	_VPGERLRAL_					0	0	0			REV__ENST00000603175.1_1_2:74729816-74730080:+|nuORF	REV__ENST00000603175.1_1_2:74729816-74730080:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.82135009765625	2	505.808908	1009.60326	0.31575	0.00015971	-0.27291	-0.00013804	0.042839	2.1668E-05	505.8088070221481	29.245	0.5855	29.257	28.884	29.469	0.012266					34	20	2	0	0	0	0.18803	1	5233	5233		25.399	3.6527	1	214540	+		53441	22647	30603	30604	65398	65398					0.098845578083683
VPGHGPYI	8	Unmodified	_VPGHGPYI_					0	0	0			REV__ENST00000522558.1_1_8:71553109-71556351:-|nuORF	REV__ENST00000522558.1_1_8:71553109-71556351:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2348937988281	2	420.224146	838.433738	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.802	1	48.834	48.334	49.334	0.032043								0	0	0	0.3683	1	11186	11186		6.3541	0.59368	1		+		53442	16395	30604	30605	65399	65399					0.00805861525805085
VPGKSTPKL	9	Unmodified	_VPGKSTPKL_					0	0	0		ENSG00000082458|ENST00000374360|DLG3	ENSG00000082458|ENST00000374360|DLG3	ENSG00000082458|ENST00000374360|DLG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.8009338378906	2	463.78711	925.559667	0.36219	0.00016798	-0.24098	-0.00011176	0.12121	5.6214E-05	463.78709599598807	35.912	0.60829	35.998	35.762	36.371	0.08625					30	21	2	0	0	0	0.17787	1	7267	7267		26.884	0.61551	1	414800			53443	1202	30605	30606	65400	65400					0.09390948311227021
VPGLLPLAWL	10	Unmodified	_VPGLLPLAWL_					0	0	0			REV__nc|ENSG00000007038|Q9Y6M0-3|PRSS21	REV__nc|ENSG00000007038|Q9Y6M0-3|PRSS21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.3005981445312	2	539.836603	1077.65865	0.3519	0.00018997	0.38973	0.00021039	0.74162	0.00040036	539.8365784164018	73.159	0.40932	73.213	73.01	73.419	0.053833					22	14	2	0	0	0	0.31745	1	18721	18721		7.9102	2.6795	1	134000	+		53444	13378	30606	30607	65401	65401					0.12292971276133358
VPGNRPGSVIR	11	Unmodified	_VPGNRPGSVIR_					0	0	0		nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9	nc|ENSG00000008294|O60271-4|SPAG9	nc|ENSG00000008294|O60271-4|SPAG9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.354248046875	2	576.335821	1150.65709	0.045932	2.6472E-05	-2.8698	-0.001654	-2.8239	-0.0016275	576.3345884973767	38.382	0.40998	38.382	38.239	38.649	0					16	14	2	0	0	0	0.34542	1	8012	8012		18.146	1.2041	1	183040			53445	392	30607	30608	65402	65402					0.08778730240078403
VPGPRRSGA	9	Unmodified	_VPGPRRSGA_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.7561340332031	2	448.756675	895.498798	-0.11081	-4.9726E-05	-0.66956	-0.00030047	-0.78037	-0.00035019	448.7563563523076	13.408	1.0369	13.408	12.925	13.962	0					88	36	4	0	0	0	0.047483	1	392	392		53.833	7.8118	1	942830			53446	3196	30608	30609	65403	65403					0.046868560516600155
VPGPRRSGA	9	Unmodified	_VPGPRRSGA_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7564392089844	2	448.756675	895.498798	-0.18279	-8.2028E-05	-0.36392	-0.00016331	-0.54671	-0.00024534	448.7564620886412	13.472	1.1025	13.372	12.894	13.997	-0.099291					82	38	4	0	0	0	0.12642	1	454	454		34.402	5.9149	1	1024600			53447	3196	30608	30609	65404	65404					0.046868560516600155
VPGPRRSGA	9	Unmodified	_VPGPRRSGA_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.7564392089844	2	448.756675	895.498798	-0.151	-6.7764E-05	-0.38974	-0.0001749	-0.54074	-0.00024266	448.7564516645653	13.464	1.0978	13.397	12.878	13.976	-0.067496					83	38	4	0	0	0	0.088443	1	449	449		39.95	5.8473	1	978560			53448	3196	30608	30609	65405	65405					0.046868560516600155
VPGRHREAWR	10	Unmodified	_VPGRHREAWR_					0	0	0		ENST00000481114.1_1_9:139297242-139298502:-|nuORF	ENST00000481114.1_1_9:139297242-139298502:-|nuORF	ENST00000481114.1_1_9:139297242-139298502:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.899169921875	3	421.898767	1262.67447	-0.27776	-0.00011719	0.82732	0.00034904	0.54955	0.00023186	421.8993185354585	12.386	0.25843	12.29	12.178	12.436	-0.096607					12	8	2	0	0	0	0.40992	1	123	123		0.69767	0.24315	1	44083			53449	11021	30609	30610	65406	65406					0.053640705657244325
VPGRLAQKEL	10	Unmodified	_VPGRLAQKEL_					0	0	0			REV__ZP4|p.V429L|1|0.32|ENSG00000116996|chr1:237885191-237885191|C/A|missense_variant	REV__ZP4|p.V429L|1|0.32|ENSG00000116996|chr1:237885191-237885191|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2579345703125	2	555.835123	1109.65569	0.38471	0.00021384	0.074034	4.1151E-05	0.45875	0.00025499	555.8351846925059	45.461	0.39678	45.526	45.33	45.727	0.065048					18	14	2	0	0	0	0.31358	1	10134	10134		13.906	4.5229	1	175330	+		53450	23365	30610	30611	65407	65407					0.10525096151309299
VPGRRPSQ	8	Unmodified	_VPGRRPSQ_					0	0	0			REV__ENST00000395270.5_1_7:72350354-72361506:+|nuORF	REV__ENST00000395270.5_1_7:72350354-72361506:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.75634765625	2	448.756675	895.498798	-0.18279	-8.2028E-05	-0.36392	-0.00016331	-0.54671	-0.00024534	448.7564620886412	13.472	1.1025	13.372	12.894	13.997	-0.099291					82	38	4	0	0	0	0.27124	1	413	413		34.102	3.4659	1	1024600	+		53451	20630	30611	30612	65408	65408					0.046868560516600155
VPGRRPSQ	8	Unmodified	_VPGRRPSQ_					0	0	0			REV__ENST00000395270.5_1_7:72350354-72361506:+|nuORF	REV__ENST00000395270.5_1_7:72350354-72361506:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.75628662109375	2	448.756675	895.498798	-0.151	-6.7764E-05	-0.38974	-0.0001749	-0.54074	-0.00024266	448.7564516645653	13.464	1.0978	13.397	12.878	13.976	-0.067496					83	38	4	0	0	0	0.27124	1	409	409		34.102	3.4659	1	978560	+		53452	20630	30611	30612	65409	65409					0.046868560516600155
VPGRRSQTPK	10	Unmodified	_VPGRRSQTPK_					0	0	0		L1MB7_dup8233|chr7:1132719-1133397:+|1.2845625367324962|0.1040843007729222|3.63|537.0|9|2|sense	L1MB7_dup8233|chr7:1132719-1133397:+|1.2845625367324962|0.1040843007729222|3.63|537.0|9|2|sense	L1MB7_dup8233|chr7:1132719-1133397:+|1.2845625367324962|0.1040843007729222|3.63|537.0|9|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3478393554688	2	563.327996	1124.64144	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.373	1	46.427	45.927	46.927	0.054127								0	0	0	0.35216	1	10442	10442		13.906	0	1				53453	12451	30612	30613	65410	65410					0.08410443723028038
VPGSDPAHYEF	11	Unmodified	_VPGSDPAHYEF_					0	0	0		ENSG00000267978|ENST00000595065|MAGEA9B;ENSG00000123584|ENST00000243314|MAGEA9	ENSG00000267978|ENST00000595065|MAGEA9B	ENSG00000267978|ENST00000595065|MAGEA9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.7749633789062	2	609.774928	1217.5353	0.081158	4.9488E-05	0.53221	0.00032453	0.61337	0.00037402	609.7752071640899	61.996	0.5219	61.987	61.728	62.25	-0.0085564					38	18	3	0	0	0	0.38623	1	15269	15269		13.042	2.2185	1	304160			53454	3115	30613	30614	65411	65411					-0.06476356632970237
VPGTRRPN	8	Unmodified	_VPGTRRPN_					0	0	0			REV__ENST00000356016.7_1_10:98592747-98593206:+|nuORF	REV__ENST00000356016.7_1_10:98592747-98593206:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.7563781738281	2	448.756675	895.498798	-0.11081	-4.9726E-05	-0.66956	-0.00030047	-0.78037	-0.00035019	448.7563563523076	13.408	1.0369	13.408	12.925	13.962	0					88	36	4	0	0	0	0.37937	1	436	436		21.747	0	1	942830			53455	20196	30614	30615	65412	65412					0.046868560516600155
VPGVGISPEA	10	Unmodified	_VPGVGISPEA_					0	0	0		nc|ENSG00000049540|P15502-11|ELN;nc|ENSG00000049540|P15502-8|ELN;nc|ENSG00000049540|P15502-7|ELN;nc|ENSG00000049540|P15502-6|ELN;nc|ENSG00000049540|P15502-12|ELN;nc|ENSG00000049540|P15502-13|ELN;nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-1|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502-10|ELN;nc|ENSG00000049540|P15502|ELN;nc|ENSG00000049540|P15502-9|ELN	nc|ENSG00000049540|P15502-11|ELN	nc|ENSG00000049540|P15502-11|ELN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.78729248046875	2	463.2531	924.491647	0.34723	0.00016086	-1.2934	-0.00059917	-0.94617	-0.00043832	463.2538908627151	77.613	0.35179	77.613	77.444	77.796	0					21	12	2	0	0	0	0.3198	1	19996	19996		4.3292	0	1	66499			53456	651	30615	30616	65413	65413					0.02638078660561405
VPHCRVRVV	9	Unmodified	_VPHCRVRVV_					0	0	0			REV__ENST00000547318.5_1_12:51453356-51453572:+|nuORF	REV__ENST00000547318.5_1_12:51453356-51453572:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.8109130859375	2	532.810928	1063.6073	0.26948	0.00014358	0.38735	0.00020639	0.65683	0.00034997	532.8110211050448	73.803	1.3516	73.803	73.053	74.405	0					138	46	4	0	0	0	0.27532	2	18818	18818;18866		12.532	12.532	1	4039400	+		53457	22179	30616	30617	65414;65415	65414					0.07804324030439602
VPHCRVRVV	9	Unmodified	_VPHCRVRVV_					0	0	0			REV__ENST00000547318.5_1_12:51453356-51453572:+|nuORF	REV__ENST00000547318.5_1_12:51453356-51453572:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.81103515625	2	532.810928	1063.6073	0.25705	0.00013696	0.35789	0.00019069	0.61494	0.00032765	532.8110052523568	73.765	1.8279	73.817	72.812	74.64	0.052368					155	64	4	0	0	0	0.27532	2	18829	18829;18880		12.532	12.532	1	4198100	+		53458	22179	30616	30617	65416;65417	65416					0.07804324030439602
VPHCRVRVV	9	Unmodified	_VPHCRVRVV_					0	0	0			REV__ENST00000547318.5_1_12:51453356-51453572:+|nuORF	REV__ENST00000547318.5_1_12:51453356-51453572:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.8112182617188	2	532.810928	1063.6073	0.39822	0.00021217	0.22657	0.00012072	0.62479	0.00033289	532.8109123145177	73.891	1.3199	73.86	73.008	74.328	-0.030655					140	47	4	0	0	0	0.27532	1	18890	18890		12.532	12.532	1	3997500	+		53459	22179	30616	30617	65418	65418					0.07804324030439602
VPHEVAQYI	9	Unmodified	_VPHEVAQYI_					0	0	0		ENSG00000107551|ENST00000340258|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF;nc|ENSG00000107551|Q9H2L5-3|RASSF4;nc|ENSG00000107551|Q9H2L5-2|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2799682617188	2	528.279649	1054.54475	0.8251	0.00043588	0.17492	9.2408E-05	1	0.00052829	528.2796446727687	47.097	0.82095	47.097	46.813	47.634	0					80	28	4	0	0	0	0.012386	2	10662	10662;10713		75.761	41.359	1	3511200			53460	2131	30617	30618	65419;65420	65419					0.0196545644323578
VPHEVAQYI	9	Unmodified	_VPHEVAQYI_					0	0	0		ENSG00000107551|ENST00000340258|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF;nc|ENSG00000107551|Q9H2L5-3|RASSF4;nc|ENSG00000107551|Q9H2L5-2|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2801513671875	2	528.279649	1054.54475	0.47265	0.00024969	0.84062	0.00044408	1.3133	0.00069377	528.2799479564914	46.93	0.72364	46.983	46.737	47.461	0.05257					65	26	3	0	0	0	0.10059	2	10621	10621;10671		38.176	5.8701	1	3459500			53461	2131	30617	30618	65421;65422	65421					0.0196545644323578
VPHEVAQYI	9	Unmodified	_VPHEVAQYI_					0	0	0		ENSG00000107551|ENST00000340258|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF;nc|ENSG00000107551|Q9H2L5-3|RASSF4;nc|ENSG00000107551|Q9H2L5-2|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2803344726562	2	528.279649	1054.54475	0.99216	0.00052414	0.33883	0.00017899	1.331	0.00070313	528.2797064232117	46.992	0.6732	47.046	46.768	47.442	0.054371					70	23	4	0	0	0	0.023967	2	10628	10628;10678		62.573	35.689	1	3540400			53462	2131	30617	30618	65423;65424	65423					0.0196545644323578
VPHFPTPSI	9	Unmodified	_VPHFPTPSI_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7716064453125	2	497.77146	993.528367	0.84753	0.00042188	-0.33775	-0.00016812	0.50978	0.00025375	497.7712269469857	56.126	1.5736	56.126	55.302	56.876	0					80	57	2	0	0	0	0.0041925	1	13547	13547		92.822	38.049	1	1082800			53463	4810	30618	30619	65425	65425					0.03134375277147683
VPHFPTPSI	9	Unmodified	_VPHFPTPSI_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.77146	993.528367	0.84812	0.00042217	-0.36099	-0.00017969	0.48714	0.00024248	497.77120447325535	56.183	1.5243	56.262	55.305	56.829	0.078674	0.012063	3.7723E-05	NaN	92.822	96	56	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	976980			53464	4810	30618	30619							0.03134375277147683
VPHFPTPSI	9	Unmodified	_VPHFPTPSI_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	497.77146	993.528367	0.96971	0.00048269	-0.51004	-0.00025388	0.45967	0.00022881	497.7711967551965	56.381	1.3291	56.362	55.536	56.865	-0.019077	0.11199	-0.00011067	NaN	92.822	66	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1011300			53465	4810	30618	30619							0.03134375277147683
VPHGGFANI	9	Unmodified	_VPHGGFANI_					0	0	0		nc|ENSG00000085382|Q8IYU2-2|HACE1;nc|ENSG00000085382|Q8IYU2-3|HACE1;nc|ENSG00000085382|Q8IYU2-4|HACE1;ENSG00000085382|ENST00000262903|HACE1	nc|ENSG00000085382|Q8IYU2-2|HACE1	nc|ENSG00000085382|Q8IYU2-2|HACE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2692565917969	2	456.240327	910.466101	0.1604	7.3182E-05	0.06985	3.1868E-05	0.23025	0.00010505	456.2402194607209	39.757	0.46762	39.857	39.622	40.09	0.099407					30	16	2	0	0	0	0.21137	1	8438	8438		24.674	5.2349	1	296420			53466	1256	30619	30620	65426	65426					0.00728648928804887
VPHGHITSL	9	Unmodified	_VPHGHITSL_					0	0	0		ENST00000494813.5_1_X:153187159-153200402:-|nuORF;ENSG00000102030|ENST00000464845|NAA10;ENST00000477882.1_1_X:153197755-153198123:-|nuORF;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000156269|ENST00000286794|NAA11	ENST00000494813.5_1_X:153187159-153200402:-|nuORF	ENST00000494813.5_1_X:153187159-153200402:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7664794921875	2	480.766709	959.518865	0.039831	1.9149E-05	-0.47801	-0.00022981	-0.43818	-0.00021066	480.7664174110565	26.111	0.93077	26.111	25.798	26.729	0					73	32	4	0	0	0	0.00010798	2	4251	4251;4302		139.54	39.173	1	950250			53467	1737	30620	30621	65427;65428	65427					0.03748606991609904
VPHGHITSL	9	Unmodified	_VPHGHITSL_					0	0	0		ENST00000494813.5_1_X:153187159-153200402:-|nuORF;ENSG00000102030|ENST00000464845|NAA10;ENST00000477882.1_1_X:153197755-153198123:-|nuORF;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000156269|ENST00000286794|NAA11	ENST00000494813.5_1_X:153187159-153200402:-|nuORF	ENST00000494813.5_1_X:153187159-153200402:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7665100097656	2	480.766709	959.518865	0.069321	3.3327E-05	-0.28153	-0.00013535	-0.21221	-0.00010203	480.7664329331453	26.147	0.90324	26.108	25.843	26.746	-0.038671					78	31	4	0	0	0	0.00010798	2	4265	4265;4338		139.54	79.154	1	1013200			53468	1737	30620	30621	65429;65430	65429					0.03748606991609904
VPHGHITSL	9	Unmodified	_VPHGHITSL_					0	0	0		ENST00000494813.5_1_X:153187159-153200402:-|nuORF;ENSG00000102030|ENST00000464845|NAA10;ENST00000477882.1_1_X:153197755-153198123:-|nuORF;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000156269|ENST00000286794|NAA11	ENST00000494813.5_1_X:153187159-153200402:-|nuORF	ENST00000494813.5_1_X:153187159-153200402:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7663879394531	2	480.766709	959.518865	0.26022	0.00012511	-0.64592	-0.00031054	-0.3857	-0.00018543	480.7663988600737	26.167	0.86612	26.145	25.945	26.811	-0.022236					70	30	4	0	0	0	0.00077644	2	4272	4272;4325		125.62	41.081	1	938820			53469	1737	30620	30621	65431;65432	65431					0.03748606991609904
VPHHCILP	8	Unmodified	_VPHHCILP_					0	0	0			REV__ENST00000409054.1_1_2:87883204-87883246:+|nuORF	REV__ENST00000409054.1_1_2:87883204-87883246:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.8687438964844	2	458.247098	914.479642	0.15464	7.0865E-05	2.9447	0.0013494	3.0994	0.0014203	458.2483361649597	20.537	0.65648	20.537	20.285	20.942	0					32	22	2	0	0	0	0.3439	1	2633	2633		2.8892	0	1	38650	+		53470	20752	30621	30622	65433	65433					0.018981834363898997
VPHHLLSSV	9	Unmodified	_VPHHLLSSV_					0	0	0		ENST00000441339.2_11:69061685-69061946:+|nuORF	ENST00000441339.2_11:69061685-69061946:+|nuORF	ENST00000441339.2_11:69061685-69061946:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.78265380859375	2	494.782359	987.550165	0.47159	0.00023334	0.055019	2.7223E-05	0.52661	0.00026056	494.7823279199525	31.903	0.99648	31.903	31.61	32.606	0					70	35	3	0	0	0	0.0017972	1	6059	6059		112.59	78.191	1	1477400			53471	10553	30622	30623	65434	65434					0.055891800257199975
VPHHLLSSV	9	Unmodified	_VPHHLLSSV_					0	0	0		ENST00000441339.2_11:69061685-69061946:+|nuORF	ENST00000441339.2_11:69061685-69061946:+|nuORF	ENST00000441339.2_11:69061685-69061946:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7825622558594	2	494.782359	987.550165	0.51522	0.00025492	0.11524	5.7017E-05	0.63046	0.00031194	494.78236248917665	31.837	1.1218	31.879	31.399	32.521	0.042366					71	39	3	0	0	0	0.0032391	1	6040	6040		100.37	60.414	1	1954400			53472	10553	30622	30623	65435	65435					0.055891800257199975
VPHHLLSSV	9	Unmodified	_VPHHLLSSV_					0	0	0		ENST00000441339.2_11:69061685-69061946:+|nuORF	ENST00000441339.2_11:69061685-69061946:+|nuORF	ENST00000441339.2_11:69061685-69061946:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7824401855469	2	494.782359	987.550165	0.39136	0.00019364	0.2496	0.0001235	0.64096	0.00031713	494.7823679950804	31.841	0.94576	31.882	31.62	32.565	0.040989					60	33	2	0	0	0	0.00054764	1	6023	6023		112.59	70.499	1	1351100			53473	10553	30622	30623	65436	65436					0.055891800257199975
VPHPGSITI	9	Unmodified	_VPHPGSITI_					0	0	0		UNK|p.N600Kfs*15|1|0.18|ENSG00000132478|chr17:75820071-75820071|C/-|frameshift_variant;ENSG00000132478|ENST00000589666|UNK	UNK|p.N600Kfs*15|1|0.18|ENSG00000132478|chr17:75820071-75820071|C/-|frameshift_variant	UNK|p.N600Kfs*15|1|0.18|ENSG00000132478|chr17:75820071-75820071|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.7636413574219	2	460.763635	919.512717	-0.018316	-8.4395E-06	0.21189	9.763E-05	0.19357	8.9191E-05	460.763665484291	43.967	0.75357	43.967	43.576	44.33	0					55	27	3	0	0	0	0.0014051	1	9697	9697		117.6	50.255	1	1251500			53474	3641	30623	30624	65437	65437					0.04974088760093309
VPHPGSITI	9	Unmodified	_VPHPGSITI_					0	0	0		UNK|p.N600Kfs*15|1|0.18|ENSG00000132478|chr17:75820071-75820071|C/-|frameshift_variant;ENSG00000132478|ENST00000589666|UNK	UNK|p.N600Kfs*15|1|0.18|ENSG00000132478|chr17:75820071-75820071|C/-|frameshift_variant	UNK|p.N600Kfs*15|1|0.18|ENSG00000132478|chr17:75820071-75820071|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	460.76373291015625	2	460.763635	919.512717	0.087021	4.0096E-05	0.24861	0.00011455	0.33564	0.00015465	460.7636456421475	43.796	0.66615	43.874	43.541	44.208	0.077515					62	24	4	0	0	0	0.00097449	1	9642	9642		123.1	45.112	1	1174400			53475	3641	30623	30624	65438	65438					0.04974088760093309
VPHPGSITI	9	Unmodified	_VPHPGSITI_					0	0	0		UNK|p.N600Kfs*15|1|0.18|ENSG00000132478|chr17:75820071-75820071|C/-|frameshift_variant;ENSG00000132478|ENST00000589666|UNK	UNK|p.N600Kfs*15|1|0.18|ENSG00000132478|chr17:75820071-75820071|C/-|frameshift_variant	UNK|p.N600Kfs*15|1|0.18|ENSG00000132478|chr17:75820071-75820071|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.7636413574219	2	460.763635	919.512717	0.21428	9.8735E-05	0.60649	0.00027945	0.82078	0.00037818	460.76353033988966	43.762	0.61115	43.846	43.492	44.103	0.083996					46	22	3	0	0	0	0.00097449	1	9621	9621		123.1	45.112	1	906740			53476	3641	30623	30624	65439	65439					0.04974088760093309
VPHRSSGHSL	10	Unmodified	_VPHRSSGHSL_					0	0	0		ENSG00000162923|ENST00000414423|WDR26	ENSG00000162923|ENST00000414423|WDR26	ENSG00000162923|ENST00000414423|WDR26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7835693359375	2	538.783422	1075.55229	0.047344	2.5508E-05	0.55099	0.00029686	0.59833	0.00032237	538.783740599755	13.812	0.36483	13.708	13.538	13.903	-0.10466					28	12	4	0	0	0	0.27248	1	534	534		23.79	4.5328	1	135090			53477	5630	30624	30625	65440	65440					0.017536087635335207
VPHRVLPLL	9	Unmodified	_VPHRVLPLL_					0	0	0		ENST00000290759.8_1_15:76630616-76633527:+|nuORF	ENST00000290759.8_1_15:76630616-76633527:+|nuORF	ENST00000290759.8_1_15:76630616-76633527:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3283081054688	2	522.339844	1042.66514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.46	1	90.461	89.961	90.961	0.0003891								0	0	0	0.25352	1	23967	23967		5.2307	2.3415	1				53478	9152	30625	30626	65441	65441					0.14550909227523334
VPHSRNSITL	10	Unmodified	_VPHSRNSITL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;ENST00000492816.6_1_2:216249553-216256565:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3143920898438	2	562.314554	1122.61456	-0.092521	-5.2026E-05	-0.047164	-2.6521E-05	-0.13968	-7.8547E-05	562.3144962386025	28.021	0.57832	28.021	27.84	28.418	0					34	19	2	0	0	0	0.093324	2	4874	4823;4874		49.527	24.166	1	497980			53479	2642	30626	30627	65442;65443	65443					0.05815335111856257
VPHSRNSITL	10	Unmodified	_VPHSRNSITL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;ENST00000492816.6_1_2:216249553-216256565:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3145751953125	2	562.314554	1122.61456	0.051238	2.8812E-05	-0.18761	-0.0001055	-0.13638	-7.6686E-05	562.3144093452057	28.011	0.5962	28.007	27.763	28.359	-0.0042572					46	20	3	0	0	0	0.15113	2	4814	4814;4875		38.615	21.502	1	474210			53480	2642	30626	30627	65444;65445	65444					0.05815335111856257
VPHSRNSITL	10	Unmodified	_VPHSRNSITL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-11|FN1;ENST00000492816.6_1_2:216249553-216256565:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3143310546875	2	562.314554	1122.61456	-0.13437	-7.5556E-05	0.12042	6.7717E-05	-0.013942	-7.8399E-06	562.3145490182305	28.008	0.61653	28.009	27.764	28.38	0.0004673					50	21	4	0	0	0	0.093324	2	4806	4806;4856		49.527	25.507	1	519890			53481	2642	30626	30627	65446;65447	65446					0.05815335111856257
VPHSTKRF	8	Unmodified	_VPHSTKRF_					0	0	0		ENST00000434805.1_1_1:35816564-35817152:+|nuORF;ENST00000465511.1_1_11:118431647-118432142:+|nuORF	ENST00000434805.1_1_1:35816564-35817152:+|nuORF	ENST00000434805.1_1_1:35816564-35817152:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7613220214844	2	486.274701	970.534849	0.27204	0.00013229	0.20558	9.997E-05	0.47762	0.00023225	486.274676574486	30.672	1.1187	30.672	30.113	31.231	0					96	39	4	0	0	0	0.41097	1	5692	5692		18.135	1.1927	1	485450			53482	10501	30627	30628	65448	65448					0.0484031322851024
VPHVLPFI	8	Unmodified	_VPHVLPFI_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;KPNB1|p.A876Cfs*2|1|0.05|ENSG00000108424|chr17:47680663-47680664|-/GTGCT|frameshift_variant;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.8262634277344	2	461.281463	920.548374	0.019148	8.8326E-06	0.79691	0.0003676	0.81605	0.00037643	461.2817247386536	69.301	0.78975	69.368	69.066	69.856	0.066048					67	27	3	0	0	0	0.21989	1	17499	17499		41.817	24.731	1	1058600			53483	2185	30628	30629	65449	65449					0.084921710077424
VPHVLPFI	8	Unmodified	_VPHVLPFI_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;KPNB1|p.A876Cfs*2|1|0.05|ENSG00000108424|chr17:47680663-47680664|-/GTGCT|frameshift_variant;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	460.8182373046875	2	461.281463	920.548374	0.073203	3.3767E-05	0.75096	0.0003464	0.82416	0.00038017	461.2817173959873	69.452	0.73977	69.43	69.092	69.832	-0.022087					65	26	3	0	0	0	0.21989	1	17506	17506		52.334	41.22	1	913740			53484	2185	30628	30629	65450	65450					0.084921710077424
VPHVLPFI	8	Unmodified	_VPHVLPFI_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;KPNB1|p.A876Cfs*2|1|0.05|ENSG00000108424|chr17:47680663-47680664|-/GTGCT|frameshift_variant;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	461.281463	920.548374	-0.12611	-5.8173E-05	0.94657	0.00043663	0.82046	0.00037846	461.28180014098814	69.385	0.77777	69.385	69.037	69.815	0	-0.0090477	0.00010888	NaN	41.817	63	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1112600			53485	2185	30628	30629							0.084921710077424
VPICKGLNK	9	Unmodified	_VPICKGLNK_					0	0	0			REV__ENST00000295190.8_1_2:230924004-230933525:-|nuORF	REV__ENST00000295190.8_1_2:230924004-230933525:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8004150390625	2	486.288963	970.563372	0.4725	0.00022977	-0.13475	-6.5526E-05	0.33776	0.00016425	486.28890107628825	40.303	1.0374	40.396	39.917	40.954	0.09267					56	37	2	0	0	0	0.20651	1	8483	8483		14.838	0	1	477810	+		53486	19777	30629	30630	65451	65451					0.07691294813446348
VPIDLQCIE	9	Unmodified	_VPIDLQCIE_					0	0	0		ENST00000495881.1_1_1:156255017-156255866:+|nuORF;TMEM79|p.S265Lfs*61|1|0.17|ENSG00000163472|chr1:156286292-156286292|T/-|frameshift_variant;ENSG00000163472|ENST00000405535|TMEM79	ENST00000495881.1_1_1:156255017-156255866:+|nuORF	ENST00000495881.1_1_1:156255017-156255866:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2551879882812	2	515.267893	1028.52123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.58	1	65.58	65.08	66.08	0								0	0	0	0.21357	1	16367	16367		18.135	0	1				53487	5684	30630	30631	65452	65452					0.00811274614420654
VPIEDPGESS	10	Unmodified	_VPIEDPGESS_					0	0	0		ENST00000583202.5_1_17:61898213-61899202:-|nuORF	ENST00000583202.5_1_17:61898213-61899202:-|nuORF	ENST00000583202.5_1_17:61898213-61899202:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.8367309570312	2	515.240386	1028.46622	0.1198	6.1724E-05	1.0278	0.00052957	1.1476	0.00059129	515.2408616514147	49.322	1.3062	49.354	49.014	50.32	0.032043					69	47	2	0	0	0	0.27772	1	11431	11431		26.884	6.43	1	331920			53488	12091	30631	30632	65453	65453					-0.046874406525148515
VPIEIPTI	8	Unmodified	_VPIEIPTI_					0	0	0		ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.27069091796875	2	441.270761	880.52697	-0.022598	-9.9716E-06	0.21445	9.4632E-05	0.19186	8.466E-05	441.27068898708427	76.21	1.0135	76.21	75.769	76.782	0					75	36	3	0	0	0	0.058048	3	19596	19545;19596;19648		74.396	20.114	1	864710			53489	2471	30632	30633	65454;65455;65456	65455					0.08192741188372565
VPIEIPTI	8	Unmodified	_VPIEIPTI_					0	0	0		ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.27069091796875	2	441.270761	880.52697	-0.012311	-5.4325E-06	0.11221	4.9515E-05	0.099899	4.4083E-05	441.27064418627936	76.106	1.157	76.159	75.537	76.694	0.053413					80	41	3	0	0	0	0.058048	3	19587	19535;19587;19635		74.396	13.625	1	905810			53490	2471	30632	30633	65457;65458;65459	65458					0.08192741188372565
VPIEIPTI	8	Unmodified	_VPIEIPTI_					0	0	0		ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2705993652344	2	441.270761	880.52697	0.20554	9.0699E-05	0.084593	3.7328E-05	0.29013	0.00012803	441.2706142008145	76.217	0.90643	76.185	75.803	76.709	-0.031479					72	32	3	0	0	0	0.033363	3	19605	19559;19605;19654		86.121	16.925	1	1092000			53491	2471	30632	30633	65460;65461;65462	65461					0.08192741188372565
VPIFPQPLI	9	Unmodified	_VPIFPQPLI_					0	0	0		ENST00000482806.5_1_7:150774217-150777853:-|nuORF;nc|ENSG00000164896|Q14296-4|FASTK;nc|ENSG00000164896|Q14296-3|FASTK;ENSG00000164896|ENST00000297532|FASTK;ENST00000466855.1_1_7:150774601-150775027:-|nuORF;ENST00000460980.5_1_7:150773814-150775027:-|nuORF;ENST00000467237.5_1_7:150774601-150776190:-|nuORF;nc|ENSG00000164896|Q14296-2|FASTK	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.315673828125	2	512.315503	1022.61645	0.53682	0.00027502	-0.19941	-0.00010216	0.33741	0.00017286	512.31541447111	85.054	1.765	85.054	84.72	86.485	0					180	68	5	0	0	0	0.017871	2	22357	22315;22357		67.344	16.489	1	7165800			53492	5893	30633	30634	65463;65464	65464					0.10604995867754496
VPIFPQPLI	9	Unmodified	_VPIFPQPLI_					0	0	0		ENST00000482806.5_1_7:150774217-150777853:-|nuORF;nc|ENSG00000164896|Q14296-4|FASTK;nc|ENSG00000164896|Q14296-3|FASTK;ENSG00000164896|ENST00000297532|FASTK;ENST00000466855.1_1_7:150774601-150775027:-|nuORF;ENST00000460980.5_1_7:150773814-150775027:-|nuORF;ENST00000467237.5_1_7:150774601-150776190:-|nuORF;nc|ENSG00000164896|Q14296-2|FASTK	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.3157348632812	2	512.315503	1022.61645	0.46934	0.00024045	-0.18632	-9.5457E-05	0.28302	0.00014499	512.3154350394053	84.95	1.532	85.031	84.7	86.232	0.080887					165	58	5	0	0	0	0.037693	2	22281	22281;22329		57.471	13.064	1	7918000			53493	5893	30633	30634	65465;65466	65465					0.10604995867754496
VPIFPQPLI	9	Unmodified	_VPIFPQPLI_					0	0	0		ENST00000482806.5_1_7:150774217-150777853:-|nuORF;nc|ENSG00000164896|Q14296-4|FASTK;nc|ENSG00000164896|Q14296-3|FASTK;ENSG00000164896|ENST00000297532|FASTK;ENST00000466855.1_1_7:150774601-150775027:-|nuORF;ENST00000460980.5_1_7:150773814-150775027:-|nuORF;ENST00000467237.5_1_7:150774601-150776190:-|nuORF;nc|ENSG00000164896|Q14296-2|FASTK	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.3157348632812	2	512.315503	1022.61645	0.442	0.00022644	-0.11312	-5.7955E-05	0.32887	0.00016849	512.3154488159156	85.052	1.74	85.039	84.71	86.45	-0.012833					194	67	5	0	0	0	0.017871	2	22308	22308;22356		67.344	22.937	1	7148900			53494	5893	30633	30634	65467;65468	65467					0.10604995867754496
VPIIAKLI	8	Unmodified	_VPIIAKLI_					0	0	0		ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.80743408203125	2	433.807314	865.600075	-0.30427	-0.000132	0.52991	0.00022988	0.22563	9.7882E-05	433.80743672308176	65.229	1.3634	65.229	64.563	65.927	0					113	49	4	0	0	0	0.065797	3	16249	16197;16249;16296		70.716	13.127	1	1460500			53495	3301	30634	30635	65469;65470;65471	65470					0.16189914701647012
VPIIAKLI	8	Unmodified	_VPIIAKLI_					0	0	0		ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.80731201171875	2	433.807314	865.600075	-0.34027	-0.00014761	0.59917	0.00025992	0.2589	0.00011231	433.8074541884457	65.113	1.258	65.202	64.526	65.784	0.088882					108	46	3	0	0	0	0.065797	3	16214	16159;16214;16261		70.716	13.127	1	1529200			53496	3301	30634	30635	65472;65473;65474	65473					0.16189914701647012
VPIIAKLI	8	Unmodified	_VPIIAKLI_					0	0	0		ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.8072509765625	2	433.807314	865.600075	-0.29748	-0.00012905	0.51794	0.00022469	0.22046	9.5637E-05	433.8074260485066	65.262	1.34	65.25	64.521	65.861	-0.011337					111	48	3	0	0	0	0.065797	3	16268	16221;16268;16318		70.716	13.573	1	1699300			53497	3301	30634	30635	65475;65476;65477	65476					0.16189914701647012
VPILAPRI	8	Unmodified	_VPILAPRI_					0	0	0		nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1;nc|ENSG00000170540|Q15041-3|ARL6IP1;ENST00000569976.5_1_16:18806770-18812824:-|nuORF	nc|ENSG00000170540|Q15041-2|ARL6IP1	nc|ENSG00000170540|Q15041-2|ARL6IP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.79473876953125	2	439.794738	877.574923	0.30093	0.00013235	-0.03014	-1.3256E-05	0.27079	0.00011909	439.7945563528424	53.632	1.104	53.632	53.358	54.462	0					101	40	5	0	0	0	0.082568	3	12701	12653;12701;12750		63.563	15.424	1	3566400			53498	6462	30635	30636	65478;65479;65480	65479					0.1312385989907625
VPILAPRI	8	Unmodified	_VPILAPRI_					0	0	0		nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1;nc|ENSG00000170540|Q15041-3|ARL6IP1;ENST00000569976.5_1_16:18806770-18812824:-|nuORF	nc|ENSG00000170540|Q15041-2|ARL6IP1	nc|ENSG00000170540|Q15041-2|ARL6IP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.794677734375	2	439.794738	877.574923	-0.031032	-1.3648E-05	0.088702	3.9011E-05	0.05767	2.5363E-05	439.79466949314417	53.635	0.99636	53.691	53.379	54.375	0.056255					97	37	4	0	0	0	0.10069	3	12686	12640;12686;12734		60.39	13.469	1	3563300			53499	6462	30635	30636	65481;65482;65483	65482					0.1312385989907625
VPILAPRI	8	Unmodified	_VPILAPRI_					0	0	0		nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1;nc|ENSG00000170540|Q15041-3|ARL6IP1;ENST00000569976.5_1_16:18806770-18812824:-|nuORF	nc|ENSG00000170540|Q15041-2|ARL6IP1	nc|ENSG00000170540|Q15041-2|ARL6IP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.794677734375	2	439.794738	877.574923	0.21902	9.6325E-05	-0.010707	-4.709E-06	0.20831	9.1616E-05	439.79457136834304	53.678	1.1921	53.669	53.305	54.497	-0.0096054					100	43	4	0	0	0	0.10069	3	12691	12645;12691;12748		60.39	19.941	1	3835000			53500	6462	30635	30636	65484;65485;65486	65485					0.1312385989907625
VPIPGHPQL	9	Unmodified	_VPIPGHPQL_					0	0	0			REV__ENST00000397420.7_1_11:838256-838586:+|nuORF	REV__ENST00000397420.7_1_11:838256-838586:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.76385498046875	2	479.279452	956.544351	0.30845	0.00014783	3.4398	0.0016486	3.7482	0.0017964	479.28177338583384	58.698	0.47923	58.789	58.474	58.953	0.091305					21	16	2	0	0	0	0.23783	1	14243	14243		12.532	2.3482	1	115850	+		53501	20673	30636	30637	65487	65487					0.0643408151404401
VPIPLTAV	8	Unmodified	_VPIPLTAV_					0	0	0			REV__ENSG00000197106|ENST00000331565|SLC6A17	REV__ENSG00000197106|ENST00000331565|SLC6A17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.260009765625	2	405.260197	808.50584	-0.089164	-3.6135E-05	0.26957	0.00010925	0.18041	7.3113E-05	405.2601537441399	70.567	0.52821	70.628	70.299	70.827	0.060776					38	18	3	0	0	0	0.3225	1	17888	17888		15.768	0	1	356780	+		53502	18709	30637	30638	65488	65488					0.09392775879518922
VPITFQVKV	9	Unmodified	_VPITFQVKV_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000475170.5_1_21:46306285-46313576:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.8185424804688	2	515.81841	1029.62227	0.32024	0.00016518	0.29562	0.00015249	0.61586	0.00031767	515.8186709416168	58.837	0.47469	58.823	58.583	59.058	-0.014267					28	16	2	0	0	0	0.053988	1	14288	14288		51.415	15.371	1	431410			53503	5453	30638	30639	65489	65489					0.10864094379417111
VPITFQVKV	9	Unmodified	_VPITFQVKV_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000475170.5_1_21:46306285-46313576:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	515.81841	1029.62227	0.36031	0.00018585	0.17386	8.9682E-05	0.53417	0.00027554	515.8184917791586	58.879	0.45289	58.879	58.654	59.107	0	0.060171	-0.00010016	NaN	51.415	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465040			53504	5453	30638	30639							0.10864094379417111
VPITFQVKV	9	Unmodified	_VPITFQVKV_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000475170.5_1_21:46306285-46313576:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	515.81841	1029.62227	0.32046	0.0001653	0.3023	0.00015593	0.62276	0.00032123	515.81854894801	58.663	0.46537	58.754	58.612	59.077	0.091301	-0.06434	3.2336E-05	NaN	51.415	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484030			53505	5453	30638	30639							0.10864094379417111
VPIVEPEI	8	Unmodified	_VPIVEPEI_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2603759765625	2	448.260394	894.506234	0.25976	0.00011644	0.055035	2.467E-05	0.3148	0.00014111	448.2603622667154	62.835	1.2455	62.835	62.476	63.722	0					116	45	4	0	0	0	0.016422	3	15524	15471;15524;15570		106.85	32.449	1	4641300			53506	4896;2236	30639	30640	65490;65491;65492	65491					0.05476150808715374
VPIVEPEI	8	Unmodified	_VPIVEPEI_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.2602844238281	2	448.260394	894.506234	0.24428	0.0001095	0.078101	3.501E-05	0.32239	0.00014451	448.260335076757	62.738	1.0985	62.834	62.44	63.539	0.095726					112	39	5	0	0	0	0.0083969	3	15494	15441;15494;15546		120.86	34.736	1	4282200			53507	4896;2236	30639	30640	65493;65494;65495	65494					0.05476150808715374
VPIVEPEI	8	Unmodified	_VPIVEPEI_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000566146.1_1_16:30080209-30080764:+|nuORF;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.26031494140625	2	448.260394	894.506234	0.2158	9.6734E-05	0.10901	4.8864E-05	0.32481	0.0001456	448.26035368165435	62.743	1.0945	62.734	62.384	63.478	-0.0085526					121	40	5	0	0	0	0.011432	3	15500	15500;15550;15603		114.94	33.08	1	4473200			53508	4896;2236	30639	30640	65496;65497;65498	65496					0.05476150808715374
VPIVHPVDGL	10	Unmodified	_VPIVHPVDGL_					0	0	0		ENSG00000187553|ENST00000651965|CYP26C1	ENSG00000187553|ENST00000651965|CYP26C1	ENSG00000187553|ENST00000651965|CYP26C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7324829101562	2	523.305667	1044.59678	0.66819	0.00034967	-0.48163	-0.00025204	0.18656	9.7628E-05	523.3048999221197	85.045	0.71242	85.033	84.557	85.269	-0.01284					46	28	2	0	0	0	0.31358	1	22343	22343		13.906	0	1	316810			53509	7689	30640	30641	65499	65499					0.0762661985700106
VPKALVNIQ	9	Unmodified	_VPKALVNIQ_					0	0	0		nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2737121582031	2	491.30821	980.601866	0.71078	0.00034921	-0.42449	-0.00020855	0.2863	0.00014066	491.3079844987355	50.756	1.2142	50.756	50.267	51.481	0					91	44	3	0	0	0	0.2451	1	11989	11989		15.847	2.8047	1	402120			53510	12986	30641	30642	65500	65500					0.11078923719617251
VPKAQKETV	9	Unmodified	_VPKAQKETV_					0	0	0		nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-7|EPB41	nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.67169189453125	2	500.295299	998.576045	0.065364	3.2701E-05	1.2404	0.00062056	1.3057	0.00065326	500.29596804363587	14.829	0.3952	14.829	14.649	15.044	0					27	13	3	0	0	0	0.24429	1	865	865		18.373	1.2602	1	129840			53511	12784	30642	30643	65501	65501					0.07670029477321805
VPKAQKETV	9	Unmodified	_VPKAQKETV_					0	0	0		nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-7|EPB41	nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2959289550781	2	500.295299	998.576045	0.11574	5.7905E-05	1.3833	0.00069208	1.4991	0.00074999	500.295832998863	14.923	0.33621	14.813	14.646	14.982	-0.10982					22	11	3	0	0	0	0.059067	1	883	883		49.527	29.113	1	154240			53512	12784	30642	30643	65502	65502					0.07670029477321805
VPKAQKETV	9	Unmodified	_VPKAQKETV_					0	0	0		nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-7|EPB41	nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.67156982421875	2	500.295299	998.576045	0.037038	1.853E-05	1.3526	0.00067672	1.3897	0.00069525	500.2960359546376	14.948	0.42769	14.883	14.7	15.128	-0.064413					27	14	3	0	0	0	0.23175	1	879	879		23.801	12.306	1	143390			53513	12784	30642	30643	65503	65503					0.07670029477321805
VPKARQPLN	9	Unmodified	_VPKARQPLN_					0	0	0			REV__ENSG00000110427|ENST00000658780|KIAA1549L	REV__ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.3292541503906	2	511.808908	1021.60326	0.28916	0.000148	0.37022	0.00018948	0.65939	0.00033748	511.8092577831958	29.317	0.83294	29.329	29.025	29.858	0.012266					42	28	2	0	0	0	0.25622	1	5330	5330		7.2892	0.56607	1	75504	+		53514	14669	30643	30644	65504	65504					0.09332557808363617
VPKARQPLN	9	Unmodified	_VPKARQPLN_					0	0	0			REV__ENSG00000110427|ENST00000658780|KIAA1549L	REV__ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	511.808908	1021.60326	0.53476	0.0002737	-0.1045	-5.3483E-05	0.43027	0.00022021	511.80896234144797	29.278	0.27215	29.278	29.169	29.441	0	-0.025689	-0.00029415	NaN	15.847	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84027	+		53515	14669	30643	30644							0.09332557808363617
VPKCGLASL	9	Unmodified	_VPKCGLASL_					0	0	0			REV__ENST00000462306.5_1_2:128047812-128051699:-|nuORF	REV__ENST00000462306.5_1_2:128047812-128051699:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.76593017578125	2	444.254588	886.494624	0.28965	0.00012868	-3.0004	-0.0013329	-2.7107	-0.0012042	444.2534284147825	65.677	0.50821	65.765	65.547	66.055	0.088882					37	18	3	0	0	0	0.17611	1	16416	16416		34.102	1.9855	1	225810	+		53516	21230	30644	30645	65505	65505					0.046836305137162526
VPKDSNGKML	10	Unmodified	_VPKDSNGKML_					0	0	0			REV__ENSG00000110076|ENST00000265459|NRXN2	REV__ENSG00000110076|ENST00000265459|NRXN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.792236328125	2	544.792066	1087.56958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.34	1	118.34	117.84	118.84	0								0	0	0	0.37807	1	30572	30572		2.9952	0.26005	1		+		53517	14661	30645	30646	65506	65506					0.02929768254307419
VPKENSEEL	9	Unmodified	_VPKENSEEL_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7637329101562	2	522.764029	1043.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.444	1	24.444	23.944	24.944	0								0	0	0	0.015736	1	3752	3752		71.708	29.752	1				53518	3395	30646	30647	65507	65507					-0.006511613815291639
VPKENSEEL	9	Unmodified	_VPKENSEEL_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.763916015625	2	522.764029	1043.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.613	1	24.557	24.057	25.057	-0.055931								0	0	0	0.026891	1	3806	3806		67.838	18.284	1				53519	3395	30646	30647	65508	65508					-0.006511613815291639
VPKENSEEL	9	Unmodified	_VPKENSEEL_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7640991210938	2	522.764029	1043.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.569	1	24.537	24.037	25.037	-0.031408								0	0	0	0.018587	1	3788	3788		70.332	20.778	1				53520	3395	30646	30647	65509	65509					-0.006511613815291639
VPKEPPPEF	9	Unmodified	_VPKEPPPEF_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7926025390625	2	520.276575	1038.5386	0.26753	0.00013919	1.9362	0.0010074	2.2038	0.0011466	520.2771344070437	73.767	0.3161	73.819	73.661	73.977	0.052361					16	10	2	0	0	0	0.22596	1	18821	18821		21.747	5.8995	1	234400			53521	1512	30647	30648	65510	65510					0.020869382117098212
VPKERLAL	8	Unmodified	_VPKERLAL_					0	0	0		nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN	nc|ENSG00000167470|Q504T8|MIDN	nc|ENSG00000167470|Q504T8|MIDN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.7890930175781	2	463.295102	924.575651	0.094069	4.3582E-05	0.11588	5.3687E-05	0.20995	9.7269E-05	463.29501800198057	57.579	0.47675	57.579	57.216	57.693	0					21	16	2	0	0	0	0.25425	1	13858	13858		36.044	9.1605	1	233680			53522	6177	30648	30649	65511	65511					0.1103465454812067
VPKFRGPL	8	Unmodified	_VPKFRGPL_					0	0	0		ENST00000434027.2_1_5:98106187-98106367:+|nuORF;ENST00000308234.11_1_5:98105044-98106367:+|nuORF	ENST00000434027.2_1_5:98106187-98106367:+|nuORF	ENST00000434027.2_1_5:98106187-98106367:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.8687438964844	2	457.284537	912.554522	0.21522	9.8416E-05	1.5211	0.00069556	1.7363	0.00079398	457.2851576881035	21.011	0.77431	21.011	20.742	21.517	0					42	26	2	0	0	0	0.34434	1	2633	2633		0.79363	0	1	92490			53523	9285	30649	30650	65512	65512					0.09474689239289091
VPKFRGPL	8	Unmodified	_VPKFRGPL_					0	0	0		ENST00000434027.2_1_5:98106187-98106367:+|nuORF;ENST00000308234.11_1_5:98105044-98106367:+|nuORF	ENST00000434027.2_1_5:98106187-98106367:+|nuORF	ENST00000434027.2_1_5:98106187-98106367:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	457.284537	912.554522	0.25518	0.00011669	1.5539	0.00071058	1.8091	0.00082728	457.2851509193384	21.32	0.76524	21.271	20.839	21.604	-0.049377	0.12968	1.4711E-05	NaN	0.79363	42	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79065			53524	9285	30649	30650							0.09474689239289091
VPKIQEEGLLS	11	Unmodified	_VPKIQEEGLLS_					0	0	0			REV__ENSG00000137955|ENST00000319942|RABGGTB	REV__ENSG00000137955|ENST00000319942|RABGGTB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8330078125	2	606.845353	1211.67615	0.81502	0.00049459	-0.84035	-0.00050996	-0.025328	-1.537E-05	606.8449871388649	47.453	0.33865	47.497	47.273	47.611	0.04332					17	12	2	0	0	0	0.28258	1	10801	10801		23.79	2.2528	1	156450	+		53525	15893	30650	30651	65513	65513					0.07878222020485737
VPKIQEEGLLS	11	Unmodified	_VPKIQEEGLLS_					0	0	0			REV__ENSG00000137955|ENST00000319942|RABGGTB	REV__ENSG00000137955|ENST00000319942|RABGGTB	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	606.845353	1211.67615	0.81502	0.00049459	-0.84035	-0.00050996	-0.025328	-1.537E-05	606.8449871388649	47.453	0.33865	47.497	47.273	47.611	0.04332	0.041255	-3.4771E-05	NaN	23.79	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156450	+		53526	15893	30650	30651							0.07878222020485737
VPKKALGITL	10	Unmodified	_VPKKALGITL_					0	0	0		ENSG00000152642|ENST00000282541|GPD1L	ENSG00000152642|ENST00000282541|GPD1L	ENSG00000152642|ENST00000282541|GPD1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7926025390625	2	520.347335	1038.68012	0.2544	0.00013238	-1.7913	-0.00093212	-1.5369	-0.00079974	520.3461044023409	73.629	0.2474	73.681	73.524	73.771	0.052361					13	8	2	0	0	0	0.3144	1	18821	18821		13.042	6.3193	1	89325			53527	5031	30651	30652	65514	65514					0.16232356304840323
VPKLQPQI	8	Unmodified	_VPKLQPQI_					0	0	0		ENST00000532383.5_1_11:10821544-10823273:-|nuORF;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2	ENST00000532383.5_1_11:10821544-10823273:-|nuORF	ENST00000532383.5_1_11:10821544-10823273:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.7897033691406	2	461.789653	921.564752	-0.26286	-0.00012139	0.62722	0.00028964	0.36436	0.00016826	461.78984894332865	42.349	0.61892	42.349	42.141	42.76	0					36	22	2	0	0	0	0.021897	1	9245	9245		125.62	62.062	1	1624700			53528	2303	30652	30653	65515	65515					0.10083252173853907
VPKLQPQI	8	Unmodified	_VPKLQPQI_					0	0	0		ENST00000532383.5_1_11:10821544-10823273:-|nuORF;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2	ENST00000532383.5_1_11:10821544-10823273:-|nuORF	ENST00000532383.5_1_11:10821544-10823273:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.7476806640625	2	461.789653	921.564752	0.10011	4.623E-05	-0.10854	-5.0121E-05	-0.0084258	-3.8909E-06	461.7895482243895	42.275	0.6927	42.36	42.063	42.755	0.085197					56	24	3	0	0	0	0.029051	1	9182	9182		117.6	77.641	1	1616600			53529	2303	30652	30653	65516	65516					0.10083252173853907
VPKLQPQI	8	Unmodified	_VPKLQPQI_					0	0	0		ENST00000532383.5_1_11:10821544-10823273:-|nuORF;nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2	ENST00000532383.5_1_11:10821544-10823273:-|nuORF	ENST00000532383.5_1_11:10821544-10823273:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.7476806640625	2	461.789653	921.564752	0.27345	0.00012628	-0.43947	-0.00020294	-0.16601	-7.6663E-05	461.7894793445226	42.171	0.7618	42.262	41.929	42.691	0.091362					59	26	3	0	0	0	0.021897	1	9166	9166		125.62	68.153	1	1502800			53530	2303	30652	30653	65517	65517					0.10083252173853907
VPKNKTKK	8	Unmodified	_VPKNKTKK_					0	0	0		ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2455749511719	2	471.808377	941.6022	-0.032604	-1.5383E-05	0.15743	7.4278E-05	0.12483	5.8895E-05	471.80837750639483	15.526	0.36124	15.462	15.275	15.636	-0.064413					22	11	3	0	0	0	0.34434	1	998	998		0.79363	0	1	75631			53531	4702	30653	30654	65518	65518					0.12906343439476586
VPKNKTKK	8	Unmodified	_VPKNKTKK_					0	0	0		ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	471.808377	941.6022	-0.16908	-7.9774E-05	0.52747	0.00024887	0.35839	0.00016909	471.8085045874891	15.414	0.4173	15.414	15.289	15.706	0	-0.027254	0.0001828	NaN	0.79363	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64272			53532	4702	30653	30654							0.12906343439476586
VPKNKTKK	8	Unmodified	_VPKNKTKK_					0	0	0		ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	ENSG00000146247|ENST00000275034|PHIP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	471.808377	941.6022	-0.037307	-1.7602E-05	0.22945	0.00010826	0.19214	9.0654E-05	471.80832986147794	15.557	0.43759	15.447	15.23	15.668	-0.10981	0.0063769	-9.8418E-05	NaN	0.79363	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79756			53533	4702	30653	30654							0.12906343439476586
VPKNYVTVM	9	Oxidation (M)	_VPKNYVTVM(Oxidation (M))_		VPKNYVTVM(1)		VPKNYVTVM(73)	0	0	1		ENSG00000158092|ENST00000481752|NCK1;nc|ENSG00000158092|P16333-2|NCK1;ENST00000482071.1_1_3:136664576-136665812:+|nuORF	ENSG00000158092|ENST00000481752|NCK1	ENSG00000158092|ENST00000481752|NCK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7840576171875	2	533.78371	1065.55287	0.75397	0.00040246	-0.16549	-8.8338E-05	0.58848	0.00031412	533.7836107615618	32.379	0.73921	32.379	32.01	32.749	0					62	26	4	0	0	0	0.014206	1	6183	6183		72.968	47.569	1	428550			53534	5339	30654	30655	65519	65519		644			0.022712673683372486
VPKNYVTVM	9	Oxidation (M)	_VPKNYVTVM(Oxidation (M))_		VPKNYVTVM(1)		VPKNYVTVM(96)	0	0	1		ENSG00000158092|ENST00000481752|NCK1;nc|ENSG00000158092|P16333-2|NCK1;ENST00000482071.1_1_3:136664576-136665812:+|nuORF	ENSG00000158092|ENST00000481752|NCK1	ENSG00000158092|ENST00000481752|NCK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.783935546875	2	533.78371	1065.55287	0.65537	0.00034982	0.078549	4.1928E-05	0.73392	0.00039175	533.783613447754	32.234	0.69541	32.289	32.035	32.73	0.055309					63	24	3	0	0	0	0.0037449	1	6102	6102		96.367	64.061	1	521310			53535	5339	30654	30655	65520	65520		644			0.022712673683372486
VPKNYVTVM	9	Oxidation (M)	_VPKNYVTVM(Oxidation (M))_		VPKNYVTVM(1)		VPKNYVTVM(70)	0	0	1		ENSG00000158092|ENST00000481752|NCK1;nc|ENSG00000158092|P16333-2|NCK1;ENST00000482071.1_1_3:136664576-136665812:+|nuORF	ENSG00000158092|ENST00000481752|NCK1	ENSG00000158092|ENST00000481752|NCK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7836303710938	2	533.78371	1065.55287	0.4985	0.00026609	0.2683	0.00014321	0.7668	0.00040931	533.78378125535	32.263	0.77297	32.318	32.045	32.818	0.054371					76	27	4	0	0	0	0.015924	1	6103	6103		70.332	47.596	1	502470			53536	5339	30654	30655	65521	65521		644			0.022712673683372486
VPKPRAIVL	9	Unmodified	_VPKPRAIVL_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2671203613281	2	496.834394	991.654236	0.41224	0.00020481	-0.067916	-3.3743E-05	0.34432	0.00017107	496.83445179272593	37.392	0.3222	37.485	37.302	37.624	0.093018					18	11	2	0	0	0	0.21389	1	7685	7685		19.257	11.968	1	161530			53537	1183	30655	30656	65522	65522					0.15807506853207087
VPKPVATTL	9	Unmodified	_VPKPVATTL_					0	0	0		nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.2893981933594	2	463.289485	924.564418	0.42016	0.00019466	-4.1798	-0.0019365	-3.7597	-0.0017418	463.28917464289003	37.055	0.45884	37.148	36.872	37.331	0.093014					42	16	3	0	0	0	0.25714	1	7625	7625		15.248	0.41021	1	415250			53538	5711	30656	30657	65523	65523					0.09911832453997249
VPKQDKRP	8	Unmodified	_VPKQDKRP_					0	0	0			REV__nc|ENSG00000144452|Q86UK0-2|ABCA12	REV__nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.66864013671875	2	484.287808	966.561064	0.23745	0.00011499	-0.23831	-0.00011541	-0.00086453	-4.1868E-07	484.28781080180954	21.728	0.63299	21.679	21.405	22.038	-0.049377					44	22	3	0	0	0	0.34319	1	2888	2888		5.7604	0	1	218890	+		53539	16235	30657	30658	65524	65524					0.07644582399996125
VPKQRYRSV	9	Unmodified	_VPKQRYRSV_					0	0	0		L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|156|3|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|156|3|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|156|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.8325805664062	2	566.832914	1131.65128	0.16932	9.5974E-05	-0.056499	-3.2025E-05	0.11282	6.3949E-05	566.8326852532543	23.045	0.6282	23	22.649	23.277	-0.044867					37	22	2	0	0	0	0.33276	1	3331	3331		3.9444	0	1	82967			53540	12481	30658	30659	65525	65525					0.0907163172842047
VPKQTLSAA	9	Unmodified	_VPKQTLSAA_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2770080566406	2	457.768917	913.523281	-0.21223	-9.7153E-05	0.21042	9.6322E-05	-0.0018163	-8.3145E-07	457.76901098725176	42.386	0.51283	42.386	42.193	42.706	0					33	18	2	0	0	0	0.21389	1	9207	9207		25.399	3.6527	1	429760			53541	6752	30659	30660	65526	65526					0.06306071414530834
VPKRCLPL	8	Unmodified	_VPKRCLPL_					0	0	0			REV__ENSG00000187676|ENST00000343307|B3GLCT	REV__ENSG00000187676|ENST00000343307|B3GLCT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.2894592285156	2	463.286223	924.557893	0.10713	4.963E-05	2.338	0.0010831	2.4451	0.0011328	463.28924889383416	37.066	0.51578	37.154	36.896	37.412	0.08741					44	18	3	0	0	0	0.23581	1	7616	7616		38.151	7.9264	1	358070	+		53542	18514	30660	30661	65527	65527					0.09259616021620332
VPKRCLPL	8	Unmodified	_VPKRCLPL_					0	0	0			REV__ENSG00000187676|ENST00000343307|B3GLCT	REV__ENSG00000187676|ENST00000343307|B3GLCT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	463.286223	924.557893	0.35617	0.00016501	2.5998	0.0012045	2.956	0.0013695	463.28920725069685	37.173	0.49487	37.173	36.93	37.424	0	0.014321	-6.4346E-06	NaN	38.151	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327430	+		53543	18514	30660	30661							0.09259616021620332
VPKRCLPL	8	Unmodified	_VPKRCLPL_					0	0	0			REV__ENSG00000187676|ENST00000343307|B3GLCT	REV__ENSG00000187676|ENST00000343307|B3GLCT	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	463.286223	924.557893	0.10713	4.963E-05	2.338	0.0010831	2.4451	0.0011328	463.28924889383416	37.066	0.51578	37.154	36.896	37.412	0.08741	-0.0045347	-0.00024905	NaN	38.151	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358070	+		53544	18514	30660	30661							0.09259616021620332
VPKREGPK	8	Unmodified	_VPKREGPK_					0	0	0			REV__ENST00000461745.5_2_3:77089448-77089580:+|nuORF	REV__ENST00000461745.5_2_3:77089448-77089580:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.7770690917969	2	455.777077	909.5396	0.0033209	1.5136E-06	0.18621	8.487E-05	0.18953	8.6384E-05	455.77705967906314	16.36	0.83071	16.36	15.918	16.749	0					54	28	2	0	0	0	0.41087	1	1309	1309		18.146	2.8979	1	132890	+		53545	21222	30661	30662	65528	65528					0.08121197371281141
VPKREGPK	8	Unmodified	_VPKREGPK_					0	0	0			REV__ENST00000461745.5_2_3:77089448-77089580:+|nuORF	REV__ENST00000461745.5_2_3:77089448-77089580:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.777099609375	2	455.777077	909.5396	-0.038307	-1.7459E-05	0.34785	0.00015854	0.30955	0.00014108	455.77710614192114	16.579	1.021	16.464	15.866	16.887	-0.11434					58	35	2	0	0	0	0.35947	1	1350	1350		24.021	3.606	1	175830	+		53546	21222	30661	30662	65529	65529					0.08121197371281141
VPKREGPK	8	Unmodified	_VPKREGPK_					0	0	0			REV__ENST00000461745.5_2_3:77089448-77089580:+|nuORF	REV__ENST00000461745.5_2_3:77089448-77089580:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.77734375	2	455.777077	909.5396	0.089843	4.0948E-05	0.24401	0.00011121	0.33385	0.00015216	455.77711893619494	16.361	0.99762	16.298	15.756	16.754	-0.062534					60	34	2	0	0	0	0.35947	1	1317	1317		24.021	3.606	1	131930	+		53547	21222	30661	30662	65530	65530					0.08121197371281141
VPKSQDLAK	9	Unmodified	_VPKSQDLAK_					0	0	0		ENST00000452408.1_1_6:28937434-28937611:-|nuORF	ENST00000452408.1_1_6:28937434-28937611:-|nuORF	ENST00000452408.1_1_6:28937434-28937611:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.6739807128906	2	493.287474	984.560395	0.057168	2.82E-05	0.46582	0.00022979	0.52299	0.00025799	493.28771215353584	15.174	0.3761	15.109	14.984	15.36	-0.064414					28	12	3	0	0	0	0.24913	1	931	931		12.532	0.89125	1	272850			53548	10657	30662	30663	65531	65531					0.06749742960278127
VPKSTALLK	9	Unmodified	_VPKSTALLK_					0	0	0			REV__nc|ENSG00000184908|P51801-2|CLCNKB;REV__CLCNKB|p.P342Hfs*109|1|0.34|ENSG00000184908|chr1:16050571-16050572|-/A|frameshift_variant	REV__nc|ENSG00000184908|P51801-2|CLCNKB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.81060791015625	2	478.810585	955.606617	0.43711	0.00020929	-0.068293	-3.27E-05	0.36882	0.00017659	478.81053593743604	44.784	0.57296	44.784	44.522	45.095	0					53	20	4	0	0	0	0.051692	1	9937	9937		63.961	0	1	1090200	+		53549	18338;13229	30663	30664	65532	65532					0.12703807862374106
VPKTTGEGTSL	11	Unmodified	_VPKTTGEGTSL_					0	0	0		ENSG00000076003|ENST00000264156|MCM6;ENST00000492091.1_1_2:136609063-136622601:-|nuORF	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2938232421875	2	545.292953	1088.57135	0.44119	0.00024058	3.9392	0.002148	4.3804	0.0023886	545.2934274099814	27.176	0.61827	27.154	26.763	27.382	-0.021412					50	21	5	0	0	0	0.29388	1	4583	4583		22.775	9.7325	1	125550			53550	1056	30664	30665	65533	65533					0.030611005439368455
VPKTTGEGTSL	11	Unmodified	_VPKTTGEGTSL_					0	0	0		ENSG00000076003|ENST00000264156|MCM6;ENST00000492091.1_1_2:136609063-136622601:-|nuORF	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2933959960938	2	545.292953	1088.57135	0.50705	0.00027649	3.8266	0.0020866	4.3336	0.0023631	545.2930513934339	27.189	0.50307	27.177	26.904	27.407	-0.01156					48	17	5	0	0	0	0.40256	1	4582	4582		10.899	1.5158	1	176940			53551	1056	30664	30665	65534	65534					0.030611005439368455
VPKTVDNFVA	10	Unmodified	_VPKTVDNFVA_					0	0	0		ENST00000561048.1_1_15:64452264-64455191:-|nuORF;ENSG00000166794|ENST00000300026|PPIB	ENST00000561048.1_1_15:64452264-64455191:-|nuORF	ENST00000561048.1_1_15:64452264-64455191:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.8157958984375	2	545.300581	1088.58661	0.16503	8.9989E-05	-1.2781	-0.00069697	-1.1131	-0.00060698	545.2999315153379	12.389	0.17945	12.321	12.226	12.405	-0.06806					9	5	2	0	0	0	0.32033	1	133	133		3.5965	0	1	58908			53552	6113	30665	30666	65535	65535					0.0458601213174461
VPKYVYKG	8	Unmodified	_VPKYVYKG_					0	0	0			REV__nc|ENSG00000107669|O95260-2|ATE1	REV__nc|ENSG00000107669|O95260-2|ATE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2716979980469	2	477.276378	952.538203	0.23292	0.00011117	0.13445	6.4168E-05	0.36737	0.00017533	477.2744224650591	40.594	0.78303	40.693	40.368	41.151	0.099407					78	28	5	0	0	0	0.42446	2	8736	8692;8736		14.582	2.0501	1	701250	+		53553	22934	30666	30667	65536;65537	65537					0.060035632825247376
VPLAGGSQRTI	11	Unmodified	_VPLAGGSQRTI_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.81689453125	2	549.81693	1097.61931	0.44046	0.00024217	-0.38418	-0.00021123	0.056272	3.0939E-05	549.8166788489984	21.403	0.65042	21.403	21.169	21.819	0					54	22	3	0	0	0	0.40332	1	2805	2805		10.8	1.4164	1	190390			53554	1550	30667	30668	65538	65538					0.07440219254635849
VPLALVTLGG	10	Unmodified	_VPLALVTLGG_					0	0	0		ENSG00000185561|ENST00000330676|TLCD2	ENSG00000185561|ENST00000330676|TLCD2	ENSG00000185561|ENST00000330676|TLCD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.26861572265625	2	470.29731	938.580068	0.092928	4.3704E-05	-0.08031	-3.777E-05	0.012618	5.9342E-06	470.2971380884393	48.896	0.26846	48.928	48.828	49.096	0.032043					15	9	2	0	0	0	0.31358	1	11228	11228		9.3831	0.63772	1	166840			53555	7542	30668	30669	65539	65539					0.10832118971052296
VPLDGRPMNI	10	Oxidation (M)	_VPLDGRPM(Oxidation (M))NI_		VPLDGRPM(1)NI		VPLDGRPM(44)NI	0	0	1		ENSG00000183684|ENST00000505490|ALYREF;nc|ENSG00000183684|Q86V81|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	ENSG00000183684|ENST00000505490|ALYREF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.2975463867188	2	564.297516	1126.58048	0.26118	0.00014738	-0.42597	-0.00024037	-0.16479	-9.2991E-05	564.2971827431296	39	1.2609	39.092	38.862	40.123	0.09267					65	44	2	0	0	0	0.11678	1	8175	8175		44.392	13.755	1	669280			53556	7389	30669	30670	65540	65540		819			0.022251706285715045
VPLDKQITI	9	Unmodified	_VPLDKQITI_					0	0	0		nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.8133544921875	2	513.813325	1025.6121	0.33425	0.00017174	-0.20884	-0.0001073	0.12541	6.4439E-05	513.8131428736632	49.846	1.2223	49.846	49.516	50.738	0					118	44	4	0	0	0	0.0011116	3	11512	11463;11512;11560		121.35	45.775	1	6495500			53557	5761	30670	30671	65541;65542;65543	65542					0.10031486654179389
VPLDKQITI	9	Unmodified	_VPLDKQITI_					0	0	0		nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8132934570312	2	513.813325	1025.6121	0.37854	0.0001945	-0.24331	-0.00012501	0.13524	6.9487E-05	513.8131041980938	49.838	1.3308	49.883	49.515	50.846	0.044891					133	49	5	0	0	0	0.0011116	3	11505	11460;11505;11556		121.35	49.424	1	6630400			53558	5761	30670	30671	65544;65545;65546	65545					0.10031486654179389
VPLDKQITI	9	Unmodified	_VPLDKQITI_					0	0	0		nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	nc|ENSG00000163938|Q9BVP2-2|GNL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8133544921875	2	513.813325	1025.6121	0.34021	0.0001748	-0.22365	-0.00011491	0.11656	5.989E-05	513.8131210460259	49.854	1.3403	49.874	49.372	50.712	0.020695					136	49	4	0	0	0	0.0011116	4	11505	11458;11505;11548;11596		121.35	49.638	1	6286300			53559	5761	30670	30671	65547;65548;65549;65550	65548					0.10031486654179389
VPLDPMEHV	9	Oxidation (M)	_VPLDPM(Oxidation (M))EHV_		VPLDPM(1)EHV		VPLDPM(110)EHV	0	0	1		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;nc|ENSG00000134644|Q14671-4|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7578735351562	2	526.757692	1051.50083	0.19748	0.00010402	0.15195	8.0039E-05	0.34943	0.00018406	526.7577023516737	38.518	1.6052	38.518	38.064	39.669	0					158	57	4	0	0	0	0.0017972	5	8052	8005;8052;8105;8154;8205		112.59	76.466	1	2692200			53560	3799	30671	30672	65551;65552;65553;65554;65555	65552		477			-0.022858960454186672
VPLDPMEHV	9	Oxidation (M)	_VPLDPM(Oxidation (M))EHV_		VPLDPM(1)EHV		VPLDPM(120)EHV	0	0	1		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;nc|ENSG00000134644|Q14671-4|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7578735351562	2	526.757692	1051.50083	0.45066	0.00023739	-0.069955	-3.685E-05	0.3807	0.00020054	526.7575847384884	38.67	1.4224	38.761	38.183	39.605	0.090881					144	51	4	0	0	0	0.0011817	5	8082	7981;8030;8082;8128;8173		120.45	84.323	1	2898600			53561	3799	30671	30672	65556;65557;65558;65559;65560	65558		477			-0.022858960454186672
VPLDPMEHV	9	Oxidation (M)	_VPLDPM(Oxidation (M))EHV_		VPLDPM(1)EHV		VPLDPM(110)EHV	0	0	1		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;nc|ENSG00000134644|Q14671-4|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7578735351562	2	526.757692	1051.50083	0.6076	0.00032006	-0.19913	-0.00010489	0.40847	0.00021517	526.7575183149725	38.674	1.3346	38.772	38.202	39.537	0.097527					139	47	4	0	0	0	0.0022761	5	8014	7966;8014;8065;8114;8162		108	71.87	1	3217800			53562	3799	30671	30672	65561;65562;65563;65564;65565	65562		477			-0.022858960454186672
VPLEASVLV	9	Unmodified	_VPLEASVLV_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.7814025878906	2	463.781493	925.548434	-0.0031086	-1.4417E-06	0.75841	0.00035173	0.7553	0.00035029	463.7814368034682	67.883	0.78566	67.883	67.623	68.408	0					48	28	2	0	0	0	0.11517	1	17090	17090		36.044	5.8194	1	681830			53563	4464	30672	30673	65566	65566					0.08268126217092231
VPLEASVLV	9	Unmodified	_VPLEASVLV_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.781494140625	2	463.781493	925.548434	0.14908	6.914E-05	0.88206	0.00040908	1.0311	0.00047822	463.78131861584444	67.791	0.83737	67.869	67.628	68.465	0.078041					59	29	3	0	0	0	0.055495	1	17077	17077		50.855	12.704	1	445900			53564	4464	30672	30673	65567	65567					0.08268126217092231
VPLEASVLV	9	Unmodified	_VPLEASVLV_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7813720703125	2	463.781493	925.548434	0.1768	8.1999E-05	0.47574	0.00022064	0.65255	0.00030264	463.78135503967553	67.91	0.83885	67.894	67.593	68.432	-0.016296					64	29	3	0	0	0	0.11517	1	17090	17090		36.044	5.8194	1	612480			53565	4464	30672	30673	65568	65568					0.08268126217092231
VPLEHPTLE	9	Unmodified	_VPLEHPTLE_					0	0	0		nc|ENSG00000164867|P29474-3|NOS3;nc|ENSG00000164867|P29474-2|NOS3;ENSG00000164867|ENST00000297494|NOS3	nc|ENSG00000164867|P29474-3|NOS3	nc|ENSG00000164867|P29474-3|NOS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.800048828125	2	517.779482	1033.54441	0.60263	0.00031203	-0.45883	-0.00023757	0.1438	7.4459E-05	517.7792634231183	74.93	1.14	74.93	74.654	75.794	0					101	40	4	0	0	0	0.20344	1	19302	19302		23.148	0.41214	1	2028600			53566	5887	30673	30674	65569	65569					0.028980367233543802
VPLEVFEYI	9	Unmodified	_VPLEVFEYI_					0	0	0		ENSG00000133398|ENST00000255764|MED10	ENSG00000133398|ENST00000255764|MED10	ENSG00000133398|ENST00000255764|MED10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.8004760742188	2	554.799883	1107.58521	0.32323	0.00017933	0.30628	0.00016992	0.62951	0.00034925	554.800183055387	91.262	0.38277	91.262	91.144	91.527	0					49	28	2	0	0	0	0.25989	2	24257	24247;24257		14.838	7.549	1	201980			53567	3709	30674	30675	65570;65571	65571					0.03572378043008939
VPLEVFEYI	9	Unmodified	_VPLEVFEYI_					0	0	0		ENSG00000133398|ENST00000255764|MED10	ENSG00000133398|ENST00000255764|MED10	ENSG00000133398|ENST00000255764|MED10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.801025390625	2	554.799883	1107.58521	0.34676	0.00019238	0.40296	0.00022356	0.74973	0.00041595	554.8002596595197	91.068	0.34341	91.158	91.121	91.465	0.090668					33	24	2	0	0	0	0.22188	2	24164	24164;24219		20.454	8.8133	1	466700			53568	3709	30674	30675	65572;65573	65572					0.03572378043008939
VPLFATWIV	9	Unmodified	_VPLFATWIV_					0	0	0			REV__ENST00000420503.1_1_1:22352034-22356862:+|nuORF	REV__ENST00000420503.1_1_1:22352034-22356862:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3052978515625	2	523.307678	1044.6008	0.66819	0.00034967	-4.3252	-0.0022634	-3.657	-0.0019137	523.3048999221197	85.045	0.71242	85.033	84.557	85.269	-0.01284					46	28	2	0	0	0	0.1669	1	22311	22311		28.487	5.7506	1	316810	+		53569	20855	30675	30676	65574	65574					0.08028709350696772
VPLFEVRSV	9	Unmodified	_VPLFEVRSV_					0	0	0			REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	REV__nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3068237304688	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.077	1	85.077	84.577	85.577	0								0	0	0	0.19932	1	22331	22331		22.736	1.1993	1		+		53570	14560	30676	30677	65575	65575					0.0762661985700106
VPLFIPALF	9	Unmodified	_VPLFIPALF_					0	0	0		ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	ENSG00000151012|ENST00000280612|SLC7A11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.312744140625	2	508.812596	1015.61064	0.41538	0.00021135	2.8513	0.0014508	3.2667	0.0016621	508.81450356450244	86.874	1.2432	86.868	86.157	87.4	-0.0056229					79	50	2	0	0	0	0.22431	1	22830	22830		20.871	6.2895	1	907620			53571	4932	30677	30678	65576	65576					0.10345897356080513
VPLGLAAEL	9	Unmodified	_VPLGLAAEL_					0	0	0			REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.76837158203125	2	441.768386	881.522219	0.13905	6.1427E-05	-0.33966	-0.00015005	-0.20061	-8.8623E-05	441.7680933250697	41.518	1.7651	41.518	39.831	41.596	0					126	64	2	0	0	0	0.072844	5	8808	8524;8610;8808;8857;8906		44.407	2.5674	1	1142000	+		53572	14210	30678	30679	65577;65578;65579;65580;65581	65579					0.07671857045602337
VPLGLAAEL	9	Unmodified	_VPLGLAAEL_					0	0	0			REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7682189941406	2	441.768386	881.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.018	1	42.018	41.518	42.518	0								0	0	0	0.16935	1	9107	9107		30.225	1.1432	1		+		53573	14210	30678	30679	65582	65582					0.07671857045602337
VPLGLAAEL	9	Unmodified	_VPLGLAAEL_					0	0	0			REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7679748535156	2	441.768386	881.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.415	1	42.415	41.915	42.915	0								0	0	0	0.17683	1	9229	9229		28.487	1.6032	1		+		53574	14210	30678	30679	65583	65583					0.07671857045602337
VPLGLAAEL	9	Unmodified	_VPLGLAAEL_					0	0	0			REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7679138183594	2	441.768386	881.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.6	1	42.6	42.1	43.1	0								0	0	0	0.19804	1	9286	9286		23.148	1.4018	1		+		53575	14210	30678	30679	65584	65584					0.07671857045602337
VPLGLAAEL	9	Unmodified	_VPLGLAAEL_					0	0	0			REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7681579589844	2	441.768386	881.522219	0.19483	8.6071E-05	-0.034574	-1.5274E-05	0.16026	7.0798E-05	441.76812286651284	41.099	1.8638	41.189	39.775	41.639	0.090252					179	68	4	0	0	0	0.10075	4	8680	8585;8680;8732;8876		38.151	1.738	1	930600	+		53576	14210	30678	30679	65585;65586;65587;65588	65586					0.07671857045602337
VPLGLAAEL	9	Unmodified	_VPLGLAAEL_					0	0	0			REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.76806640625	2	441.768386	881.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.927	1	42.018	41.518	42.518	0.090252								0	0	0	0.19804	1	9083	9083		23.148	0.41214	1		+		53577	14210	30678	30679	65589	65589					0.07671857045602337
VPLGLAAEL	9	Unmodified	_VPLGLAAEL_					0	0	0			REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7682189941406	2	441.768386	881.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.255	1	42.34	41.84	42.84	0.085197								0	0	0	0.16935	1	9180	9180		30.225	3.3412	1		+		53578	14210	30678	30679	65590	65590					0.07671857045602337
VPLGLAAEL	9	Unmodified	_VPLGLAAEL_					0	0	0			REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7684020996094	2	441.768386	881.522219	0.17188	7.5933E-05	-0.20391	-9.008E-05	-0.032023	-1.4147E-05	441.7680909165782	41.297	1.8546	41.393	39.702	41.557	0.096622					166	67	3	0	0	0	0.072844	6	8722	8516;8567;8675;8722;8775;8889		44.407	2.5674	1	1121500	+		53579	14210	30678	30679	65591;65592;65593;65594;65595;65596	65594					0.07671857045602337
VPLGLAAEL	9	Unmodified	_VPLGLAAEL_					0	0	0			REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2701721191406	2	441.768386	881.522219	0.3245	0.00014335	-0.18113	-8.0018E-05	0.14337	6.3335E-05	441.76817694958044	41.688	1.8101	41.785	41.529	43.339	0.096622					89	68	2	0	0	0	0.072844	2	9030	9030;9101		44.407	6.2558	1	1359500	+		53580	14210	30678	30679	65597;65598	65597					0.07671857045602337
VPLGLAAEL	9	Unmodified	_VPLGLAAEL_					0	0	0			REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	REV__nc|ENSG00000100593|Q6H9L7-2|ISM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2701721191406	2	441.768386	881.522219	0.3245	0.00014335	-0.18113	-8.0018E-05	0.14337	6.3335E-05	441.76817694958044	41.688	1.8101	41.785	41.529	43.339	0.096622					89	68	2	0	0	0	0.12846	1	9030	9030		44.407	6.2558	1	1359500	+		53581	14210	30678	30679	65599	65599					0.07671857045602337
VPLGLPDDTS	10	Unmodified	_VPLGLPDDTS_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.26153564453125	2	507.261122	1012.50769	-0.015765	-7.997E-06	0.18675	9.4731E-05	0.17098	8.6734E-05	507.261537789542	61.519	0.87494	61.51	61.133	62.008	-0.0094528					62	31	3	0	0	0	0.2892	1	15119	15119		21.747	5.8995	1	768870	+		53582	18238	30679	30680	65600	65600					0.0019374010680621723
VPLGPIFIM	9	Unmodified	_VPLGPIFIM_					0	0	0			REV__ENSG00000180638|ENST00000433844|SLC47A2	REV__ENSG00000180638|ENST00000433844|SLC47A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7669982910156	2	493.790807	985.56706	0.19757	9.756E-05	-0.39003	-0.00019259	-0.19245	-9.5032E-05	493.79038917151746	17.25	0.46519	17.133	16.858	17.323	-0.11739					44	16	4	0	0	0	0.25811	1	1570	1570		5.2307	0	1	121820	+		53583	18115	30680	30681	65601	65601					0.07369964587303457
VPLGPIFIM	9	Unmodified	_VPLGPIFIM_					0	0	0			REV__ENSG00000180638|ENST00000433844|SLC47A2	REV__ENSG00000180638|ENST00000433844|SLC47A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.790807	985.56706	0.36534	0.0001804	-0.48301	-0.0002385	-0.11767	-5.8105E-05	493.7901942420323	17.101	0.3762	17.101	16.895	17.272	0	0.0027977	-0.00010055	NaN	5.2307	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110880	+		53584	18115	30680	30681							0.07369964587303457
VPLGPIFIM	9	Unmodified	_VPLGPIFIM_					0	0	0			REV__ENSG00000180638|ENST00000433844|SLC47A2	REV__ENSG00000180638|ENST00000433844|SLC47A2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	493.790807	985.56706	0.42988	0.00021227	-0.25827	-0.00012753	0.17162	8.4744E-05	493.7902708826611	17.122	0.41122	17.061	16.887	17.298	-0.060429	-0.037356	0.0001214	NaN	5.2307	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95642	+		53585	18115	30680	30681							0.07369964587303457
VPLGVISRI	9	Unmodified	_VPLGVISRI_					0	0	0		ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7243347167969	2	477.310752	952.606951	0.49306	0.00023534	-0.096281	-4.5956E-05	0.39678	0.00018939	477.3105765366472	56.396	1.5036	56.396	56.049	57.552	0					102	55	3	0	0	0	0.17696	1	13627	13627		36.506	11.107	1	3874500			53586	6510	30681	30682	65602	65602					0.12875227582219395
VPLGVISRI	9	Unmodified	_VPLGVISRI_					0	0	0		ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.72430419921875	2	477.310752	952.606951	0.68695	0.00032789	-0.33956	-0.00016207	0.34739	0.00016581	477.31047363496253	56.298	1.4864	56.377	55.997	57.484	0.078674					105	54	3	0	0	0	0.17696	1	13595	13595		36.506	21.668	1	4343100			53587	6510	30681	30682	65603	65603					0.12875227582219395
VPLGVISRI	9	Unmodified	_VPLGVISRI_					0	0	0		ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.7242736816406	2	477.310752	952.606951	0.88853	0.00042411	-0.33387	-0.00015936	0.55467	0.00026475	477.3104651571267	56.394	1.6112	56.375	55.942	57.553	-0.019081					97	58	3	0	0	0	0.19208	1	13650	13650		33.445	8.0456	1	4097700			53588	6510	30681	30682	65604	65604					0.12875227582219395
VPLGWSIQP	9	Unmodified	_VPLGWSIQP_					0	0	0		ENST00000372398.5_1_9:132997216-132997372:+|nuORF	ENST00000372398.5_1_9:132997216-132997372:+|nuORF	ENST00000372398.5_1_9:132997216-132997372:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.3056945800781	2	498.779285	995.544017	0.76107	0.0003796	-1.1435	-0.00057035	-0.38243	-0.00019075	498.7789441863304	60.64	0.39317	60.737	60.503	60.896	0.096985					16	13	2	0	0	0	0.23147	1	14805	14805		19.439	0	1	114170			53589	9839	30682	30683	65605	65605					0.046066617941846744
VPLGWSIQP	9	Unmodified	_VPLGWSIQP_					0	0	0		ENST00000372398.5_1_9:132997216-132997372:+|nuORF	ENST00000372398.5_1_9:132997216-132997372:+|nuORF	ENST00000372398.5_1_9:132997216-132997372:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.3055114746094	2	498.779285	995.544017	0.81357	0.00040579	-0.89165	-0.00044474	-0.078082	-3.8946E-05	498.77885890956674	60.701	0.29016	60.692	60.572	60.862	-0.0094566					16	10	2	0	0	0	0.23147	1	14835	14835		13.508	0	1	166920			53590	9839	30682	30683	65606	65606					0.046066617941846744
VPLHDKYSL	9	Unmodified	_VPLHDKYSL_					0	0	0			REV__ENSG00000174469|ENST00000361727|CNTNAP2	REV__ENSG00000174469|ENST00000361727|CNTNAP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2827758789062	2	536.295299	1070.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.59	1	27.59	27.09	28.09	0								0	0	0	0.22377	1	4702	4702		14.838	2.3067	1		+		53591	17836	30683	30684	65607	65607					0.04358029477339187
VPLHRTFA	8	Unmodified	_VPLHRTFA_					0	0	0			REV__ENST00000308234.11_1_5:98129769-98129967:+|nuORF	REV__ENST00000308234.11_1_5:98129769-98129967:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.7822570800781	2	470.771794	939.529036	0.48583	0.00022871	1.2301	0.00057912	1.716	0.00080783	470.7717767964215	36.132	0.4172	36.219	35.982	36.4	0.08625					17	14	2	0	0	0	0.41097	1	7321	7321		18.135	0	1	206720	+		53592	19877	30684	30685	65608	65608					0.056852147168342526
VPLIIFTI	8	Unmodified	_VPLIIFTI_					0	0	0		nc|ENSG00000130303|Q10589-2|BST2;ENSG00000130303|ENST00000252593|BST2	nc|ENSG00000130303|Q10589-2|BST2	nc|ENSG00000130303|Q10589-2|BST2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.2991027832031	2	458.299322	914.584091	-0.2298	-0.00010532	0.43551	0.00019959	0.20571	9.4277E-05	458.29931525674385	97.34	0.89445	97.34	97.012	97.906	0					219	91	4	0	0	0	0.060929	1	26089	26089		82.939	23.144	1	794830			53593	3464	30685	30686	65609	65609					0.12338208464757372
VPLIIFTI	8	Unmodified	_VPLIIFTI_					0	0	0		nc|ENSG00000130303|Q10589-2|BST2;ENSG00000130303|ENST00000252593|BST2	nc|ENSG00000130303|Q10589-2|BST2	nc|ENSG00000130303|Q10589-2|BST2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.29925537109375	2	458.299322	914.584091	-0.041961	-1.9231E-05	0.19308	8.8486E-05	0.15111	6.9256E-05	458.29924469414266	97.235	0.8742	97.306	97.039	97.913	0.070465					215	95	4	0	0	0	0.0016854	2	26017	26017;26062		135.25	39.696	1	1464800			53594	3464	30685	30686	65610;65611	65610					0.12338208464757372
VPLIIFTI	8	Unmodified	_VPLIIFTI_					0	0	0		nc|ENSG00000130303|Q10589-2|BST2;ENSG00000130303|ENST00000252593|BST2	nc|ENSG00000130303|Q10589-2|BST2	nc|ENSG00000130303|Q10589-2|BST2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2991943359375	2	458.299322	914.584091	0.16674	7.6417E-05	0.0078569	3.6008E-06	0.1746	8.0018E-05	458.29915678793117	97.346	0.95477	97.34	96.993	97.948	-0.0055466					233	99	3	0	0	0	0.0016854	1	26058	26058		135.25	39.135	1	1218200			53595	3464	30685	30686	65612	65612					0.12338208464757372
VPLIIRSI	8	Unmodified	_VPLIIRSI_					0	0	0		ENSG00000132003|ENST00000590508|ZSWIM4;nc|ENSG00000132003|Q9H7M6|ZSWIM4	ENSG00000132003|ENST00000590508|ZSWIM4	ENSG00000132003|ENST00000590508|ZSWIM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.8077392578125	2	455.807845	909.601138	0.10788	4.9174E-05	0.064824	2.9547E-05	0.17271	7.8721E-05	455.80778592146487	58.031	0.63287	58.031	57.665	58.298	0					47	22	3	0	0	0	0.25352	1	14077	14077		36.127	3.8215	1	411590			53596	3605	30686	30687	65613	65613					0.1427212907054809
VPLIIRSI	8	Unmodified	_VPLIIRSI_					0	0	0		ENSG00000132003|ENST00000590508|ZSWIM4;nc|ENSG00000132003|Q9H7M6|ZSWIM4	ENSG00000132003|ENST00000590508|ZSWIM4	ENSG00000132003|ENST00000590508|ZSWIM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.78955078125	2	455.807845	909.601138	0.19129	8.7192E-05	-0.18451	-8.41E-05	0.006785	3.0927E-06	455.8077438442518	57.835	0.59156	57.921	57.63	58.222	0.085621					44	21	3	0	0	0	0.18485	1	13972	13972		56.177	20.133	1	387210			53597	3605	30686	30687	65614	65614					0.1427212907054809
VPLIIRSI	8	Unmodified	_VPLIIRSI_					0	0	0		ENSG00000132003|ENST00000590508|ZSWIM4;nc|ENSG00000132003|Q9H7M6|ZSWIM4	ENSG00000132003|ENST00000590508|ZSWIM4	ENSG00000132003|ENST00000590508|ZSWIM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.8080749511719	2	455.807845	909.601138	0.24405	0.00011124	0.067534	3.0783E-05	0.31158	0.00014202	455.8076902645965	57.967	0.75385	57.95	57.659	58.413	-0.0172					41	27	2	0	0	0	0.22007	1	14046	14046		39.95	7.6442	1	445100			53598	3605	30686	30687	65615	65615					0.1427212907054809
VPLIIVNSI	9	Unmodified	_VPLIIVNSI_					0	0	0		ENSG00000134049|ENST00000256433|IER3IP1	ENSG00000134049|ENST00000256433|IER3IP1	ENSG00000134049|ENST00000256433|IER3IP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.31304931640625	2	484.312961	966.611368	0.39039	0.00018907	-0.20359	-9.8603E-05	0.18679	9.0466E-05	484.3128439054577	79.115	1.597	79.115	78.749	80.346	0					189	62	5	0	0	0	4.0037E-07	5	20495	20450;20495;20542;20590;20640		164.52	30.813	1	5859800			53599	3751	30687	30688	65616;65617;65618;65619;65620	65617					0.12672692005139652
VPLIIVNSI	9	Unmodified	_VPLIIVNSI_					0	0	0		ENSG00000134049|ENST00000256433|IER3IP1	ENSG00000134049|ENST00000256433|IER3IP1	ENSG00000134049|ENST00000256433|IER3IP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.3131103515625	2	484.312961	966.611368	0.38035	0.00018421	-0.19879	-9.6277E-05	0.18156	8.7933E-05	484.31284301351	79.061	1.6273	79.123	78.79	80.417	0.061417					190	66	5	0	0	0	4.0037E-07	4	20459	20415;20459;20501;20543		164.52	30.813	1	5960500			53600	3751	30687	30688	65621;65622;65623;65624	65622					0.12672692005139652
VPLIIVNSI	9	Unmodified	_VPLIIVNSI_					0	0	0		ENSG00000134049|ENST00000256433|IER3IP1	ENSG00000134049|ENST00000256433|IER3IP1	ENSG00000134049|ENST00000256433|IER3IP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	484.312961	966.611368	0.51022	0.00024711	-0.29767	-0.00014417	0.21255	0.00010294	484.3127778412131	79.132	1.757	79.103	78.716	80.473	-0.028923	-0.010363	-6.8409E-05	NaN	164.52	189	67	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5982700			53601	3751	30687	30688							0.12672692005139652
VPLILDLL	8	Unmodified	_VPLILDLL_					0	0	0			REV__ENST00000392688.6_1_1:152286136-152286469:+|nuORF	REV__ENST00000392688.6_1_1:152286136-152286469:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2967224121094	2	448.296779	894.579005	-0.012919	-5.7913E-06	0.44564	0.00019978	0.43272	0.00019399	448.29693798743153	95.979	0.81666	95.979	95.685	96.502	0					194	78	3	0	0	0	0.073545	1	25635	25635		67.035	0	1	644280	+		53602	20595	30688	30689	65625	65625					0.1274990460213985
VPLILDLL	8	Unmodified	_VPLILDLL_					0	0	0			REV__ENST00000392688.6_1_1:152286136-152286469:+|nuORF	REV__ENST00000392688.6_1_1:152286136-152286469:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.2969055175781	2	448.296779	894.579005	0.28889	0.00012951	0.36126	0.00016195	0.65015	0.00029146	448.29691507907705	96.003	0.85477	95.999	95.607	96.462	-0.0038223					178	80	3	0	0	0	0.049524	1	25660	25660		78.445	0	1	827640	+		53603	20595	30688	30689	65626	65626					0.1274990460213985
VPLILDLL	8	Unmodified	_VPLILDLL_					0	0	0			REV__ENST00000392688.6_1_1:152286136-152286469:+|nuORF	REV__ENST00000392688.6_1_1:152286136-152286469:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	448.296779	894.579005	-0.012919	-5.7913E-06	0.44564	0.00019978	0.43272	0.00019399	448.29693798743153	95.979	0.81666	95.979	95.685	96.502	0	0.0031789	-8.8831E-06	NaN	78.445	194	78	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	644280	+		53604	20595	30688	30689							0.1274990460213985
VPLILDLL	8	Unmodified	_VPLILDLL_					0	0	0			REV__ENST00000392688.6_1_1:152286136-152286469:+|nuORF	REV__ENST00000392688.6_1_1:152286136-152286469:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	448.296779	894.579005	0.052624	2.3591E-05	0.5397	0.00024194	0.59232	0.00026553	448.29698131119267	95.872	0.87214	95.95	95.594	96.466	0.077408	-0.026206	7.5444E-05	NaN	78.445	175	75	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	803090	+		53605	20595	30688	30689							0.1274990460213985
VPLILDLL	8	Unmodified	_VPLILDLL_					0	0	0			REV__ENST00000392688.6_1_1:152286136-152286469:+|nuORF	REV__ENST00000392688.6_1_1:152286136-152286469:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	448.296779	894.579005	0.28889	0.00012951	0.36126	0.00016195	0.65015	0.00029146	448.29691507907705	96.003	0.85477	95.999	95.607	96.462	-0.0038223	0.023027	-8.4544E-05	NaN	78.445	178	80	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	827640	+		53606	20595	30688	30689							0.1274990460213985
VPLIPAYAFG	10	Unmodified	_VPLIPAYAFG_					0	0	0		ENSG00000147160|ENST00000276101|AWAT2	ENSG00000147160|ENST00000276101|AWAT2	ENSG00000147160|ENST00000276101|AWAT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.307861328125	2	524.29731	1046.58007	0.67468	0.00035373	-3.7699	-0.0019765	-3.0952	-0.0016228	524.2944146281326	85.05	0.32478	85.131	84.831	85.156	0.080887					19	12	2	0	0	0	0.30586	1	22253	22253		12.532	0	1	63123			53607	4751	30689	30690	65627	65627					0.05864118971044263
VPLIPLLLAF	10	Unmodified	_VPLIPLLLAF_					0	0	0		ENST00000496139.5_1_22:47158670-47188605:+|nuORF	ENST00000496139.5_1_22:47158670-47188605:+|nuORF	ENST00000496139.5_1_22:47158670-47188605:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7931518554688	2	548.362453	1094.71035	0.569	0.00031202	-1.4436	-0.00079161	-0.87459	-0.00047959	548.3615700635693	52.358	0.76431	52.408	52.172	52.936	0.050571					57	27	3	0	0	0	0.3198	1	12438	12438		1.8442	0	1	884120			53608	11227	30690	30691	65628	65628					0.16678714970043984
VPLKFGSA	8	Unmodified	_VPLKFGSA_					0	0	0			REV__ENST00000463230.5_1_2:136360217-136362413:+|nuORF	REV__ENST00000463230.5_1_2:136360217-136362413:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.53875732421875	2	409.742171	817.469789	0.2549	0.00010444	0.68864	0.00028216	0.94354	0.00038661	409.7423316285389	46.694	1.127	46.747	46.417	47.544	0.05257					88	41	4	0	0	0	0.34247	1	10769	10769		4.756	3.9624	1	2363000	+		53609	21247	30691	30692	65629	65629					0.0537531870265866
VPLKFTSI	8	Unmodified	_VPLKFTSI_					0	0	0			REV__ENST00000304786.11_1_1:225977618-225977669:+|nuORF	REV__ENST00000304786.11_1_1:225977618-225977669:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.93328857421875	2	452.778754	903.542954	0.69585	0.00031507	-0.43554	-0.00019721	0.26031	0.00011786	452.7785243006725	33.733	0.66082	33.799	33.405	34.066	0.06636					38	23	2	0	0	0	0.34218	1	6491	6491		5.2307	0	1	247210	+		53610	19846	30692	30693	65630	65630					0.08732447425290957
VPLKVFFI	8	Unmodified	_VPLKVFFI_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.80712890625	2	481.807314	961.600075	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.237	1	74.237	73.737	74.737	0								0	0	0	0.29147	1	19013	19013		30.225	5.5509	1				53611	6083	30693	30694	65631	65631					0.11773914701643662
VPLKVFFI	8	Unmodified	_VPLKVFFI_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.753662109375	2	481.807314	961.600075	0.15417	7.4281E-05	-0.46907	-0.000226	-0.3149	-0.00015172	481.8070182652127	74.061	0.3056	74.061	73.92	74.225	0					14	9	2	0	0	0	0.3366	1	18991	18991		18.135	0	1	231270			53612	6083	30693	30694	65632	65632					0.11773914701643662
VPLKVFFI	8	Unmodified	_VPLKVFFI_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.8070373535156	2	481.807314	961.600075	0.26893	0.00012957	-0.15138	-7.2938E-05	0.11755	5.6635E-05	481.8070814055709	74.23	0.36038	74.199	73.91	74.271	-0.030655					17	12	2	0	0	0	0.41097	1	19015	19015		18.135	0	1	308100			53613	6083	30693	30694	65633	65633					0.11773914701643662
VPLKVTMV	8	Oxidation (M)	_VPLKVTM(Oxidation (M))V_		VPLKVTM(1)V		VPLKVTM(54)V	0	0	1		ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17113817-17167232:-|nuORF	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7725830078125	2	451.772614	901.530675	-0.20525	-9.2725E-05	0.62761	0.00028354	0.42236	0.00019081	451.77296340055847	38.829	0.36302	38.829	38.649	39.012	0					23	12	2	0	0	0	0.13814	1	8138	8138		53.833	53.833	1	285350			53614	441	30694	30695	65634	65634		46			0.07597087690601256
VPLKVTMV	8	Oxidation (M)	_VPLKVTM(Oxidation (M))V_		VPLKVTM(1)V		VPLKVTM(48)V	0	0	1		ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17113817-17167232:-|nuORF	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7728271484375	2	451.772614	901.530675	0.13642	6.163E-05	0.25064	0.00011323	0.38705	0.00017486	451.7728294654042	38.758	0.37902	38.85	38.648	39.027	0.09267					29	13	3	0	0	0	0.17289	1	8118	8118		47.749	47.749	1	323540			53615	441	30694	30695	65635	65635		46			0.07597087690601256
VPLKVTMV	8	Oxidation (M)	_VPLKVTM(Oxidation (M))V_					0	0	1		ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17113817-17167232:-|nuORF	ENSG00000011405|ENST00000691414|PIK3C2A	ENSG00000011405|ENST00000691414|PIK3C2A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	451.772614	901.530675	0.35913	0.00016225	-0.00045585	-2.0594E-07	0.35868	0.00016204	451.7726207058559	38.771	0.39448	38.87	38.652	39.046	0.099407	0.020117	-0.0002476	NaN	53.833	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338680			53616	441	30694	30695				46			0.07597087690601256
VPLLDINVSQ	10	Unmodified	_VPLLDINVSQ_					0	0	0			REV__INVS|p.K916Rfs*27|1|0.41|ENSG00000119509|chr9:100293000-100293000|A/-|frameshift_variant	REV__INVS|p.K916Rfs*27|1|0.41|ENSG00000119509|chr9:100293000-100293000|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7644653320312	2	549.313689	1096.61282	0.27211	0.00014947	-2.0652	-0.0011345	-1.7931	-0.00098499	549.3120895132755	18.285	0.65282	18.285	18.024	18.677	0					35	22	2	0	0	0	0.31926	1	1886	1886		5.7319	0	1	40531	+		53617	15043	30695	30696	65636	65636					0.06838281303225813
VPLLDVQL	8	Unmodified	_VPLLDVQL_					0	0	0			REV__nc|ENSG00000103495|P56270-3|MAZ	REV__nc|ENSG00000103495|P56270-3|MAZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7942810058594	2	448.776211	895.537869	0.49519	0.00022223	-1.6747	-0.00075155	-1.1795	-0.00052933	448.7760809103114	77.466	0.80206	77.521	77.15	77.952	0.055412					43	28	2	0	0	0	0.34046	1	19902	19902		5.2307	0	1	105870	+		53618	14376	30696	30697	65637	65637					0.08592143562668753
VPLLKGLEP	9	Unmodified	_VPLLKGLEP_					0	0	0		ENST00000376592.5_2_1:11849260-11849482:-|nuORF	ENST00000376592.5_2_1:11849260-11849482:-|nuORF	ENST00000376592.5_2_1:11849260-11849482:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7972106933594	2	483.305136	964.595718	0.14657	7.0838E-05	-0.13188	-6.374E-05	0.014686	7.0976E-06	483.30487873794317	76.471	0.35511	76.471	76.338	76.693	0					15	12	2	0	0	0	0.25417	1	19746	19746		8.5933	4.6489	1	89367			53619	9925	30697	30698	65638	65638					0.11200405488079923
VPLLKGLEP	9	Unmodified	_VPLLKGLEP_					0	0	0		ENST00000376592.5_2_1:11849260-11849482:-|nuORF	ENST00000376592.5_2_1:11849260-11849482:-|nuORF	ENST00000376592.5_2_1:11849260-11849482:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	483.305136	964.595718	0.031344	1.5149E-05	0.29442	0.00014229	0.32576	0.00015744	483.30521893873845	76.463	0.34543	76.516	76.32	76.665	0.053421	0.022583	9.0629E-05	NaN	8.5933	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76549			53620	9925	30697	30698							0.11200405488079923
VPLLLLGGHQR	11	Unmodified	_VPLLLLGGHQR_					0	0	0			REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF	REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.8159790039062	2	601.87204	1201.72953	0.77777	0.00046812	-0.76128	-0.00045819	0.01649	9.9246E-06	601.8714327544508	51.009	0.21208	51.009	50.896	51.108	0					10	7	2	0	0	0	0.33149	1	11897	11897		5.2969	0.96765	1	185690	+		53621	20110	30698	30699	65639	65639					0.1367306431363886
VPLLLPDLR	9	Unmodified	_VPLLLPDLR_					0	0	0			REV__nc|ENSG00000118263|O75840-3|KLF7	REV__nc|ENSG00000118263|O75840-3|KLF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3319091796875	2	518.331685	1034.64882	0.37965	0.00019678	-0.16074	-8.3316E-05	0.21891	0.00011347	518.331522150536	67.524	0.74911	67.524	67.193	67.942	0					68	25	3	0	0	0	0.079752	1	17033	17033		41.84	3.6641	1	1641200	+		53622	15006	30699	30700	65640	65640					0.13287783270743603
VPLLRESTL	9	Unmodified	_VPLLRESTL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000437318.5_1_15:20588586-20648641:-|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.3114624023438	2	514.310949	1026.60735	0.22494	0.00011569	-2.7622	-0.0014207	-2.5373	-0.001305	514.3107379451502	49.18	0.71537	49.225	48.851	49.566	0.044891					51	25	3	0	0	0	0.10812	1	11326	11326		37.075	2.1426	1	368050			53623	3390	30700	30701	65641	65641					0.09510602511431898
VPLLRESTL	9	Unmodified	_VPLLRESTL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000437318.5_1_15:20588586-20648641:-|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.3109741210938	2	514.310949	1026.60735	0.046742	2.404E-05	-1.8594	-0.0009563	-1.8126	-0.00093226	514.3109040389008	49.064	0.6699	49.096	48.878	49.548	0.032043					55	23	3	0	0	0	0.073988	1	11295	11295		43.982	2.0263	1	394940			53624	3390	30700	30701	65642	65642					0.09510602511431898
VPLLRESTL	9	Unmodified	_VPLLRESTL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000437318.5_1_15:20588586-20648641:-|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	514.310949	1026.60735	0.44953	0.0002312	-2.6575	-0.0013668	-2.208	-0.0011356	514.3107957940218	49.171	0.65971	49.171	48.856	49.516	0	0.0069774	-0.00026019	NaN	43.982	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428040			53625	3390	30700	30701							0.09510602511431898
VPLLVKVI	8	Unmodified	_VPLLVKVI_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.81512451171875	2	440.815139	879.615725	0.32435	0.00014298	-0.12399	-5.4658E-05	0.20036	8.8321E-05	440.81497354834636	63.892	1.36	63.892	63.474	64.834	0					112	49	4	0	0	0	0.042326	3	15808	15808;15856;15907		81.864	25.323	1	3116400			53626	4022	30701	30702	65643;65644;65645	65643					0.17110201218713428
VPLLVKVI	8	Unmodified	_VPLLVKVI_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.8150939941406	2	440.815139	879.615725	0.24416	0.00010763	-0.078014	-3.439E-05	0.16615	7.3239E-05	440.8149891395779	63.783	1.3124	63.877	63.537	64.85	0.094078					111	47	4	0	0	0	0.042326	3	15769	15769;15815;15856		81.864	25.323	1	3412100			53627	4022	30701	30702	65646;65647;65648	65646					0.17110201218713428
VPLLVKVI	8	Unmodified	_VPLLVKVI_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.81500244140625	2	440.815139	879.615725	0.36281	0.00015993	-0.14421	-6.3569E-05	0.2186	9.6361E-05	440.81495874880346	63.9	1.5203	63.89	63.477	64.998	-0.0095329					125	54	4	0	0	0	0.042326	4	15782	15782;15829;15877;15938		81.864	27.475	1	2877700			53628	4022	30701	30702	65649;65650;65651;65652	65649					0.17110201218713428
VPLMEPKL	8	Unmodified	_VPLMEPKL_					0	0	0			REV__ENST00000482777.5_1_12:111891479-111891701:-|nuORF	REV__ENST00000482777.5_1_12:111891479-111891701:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.7890930175781	2	463.772614	925.530675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.26	1	57.26	56.76	57.76	0								0	0	0	0.33625	1	13807	13807		20.871	2.7362	1		+		53629	21508	30702	30703	65653	65653					0.06493087690591892
VPLMEPKL	8	Unmodified	_VPLMEPKL_					0	0	0			REV__ENST00000482777.5_1_12:111891479-111891701:-|nuORF	REV__ENST00000482777.5_1_12:111891479-111891701:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.78900146484375	2	463.772614	925.530675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.429	1	57.412	56.912	57.912	-0.0172								0	0	0	0.33625	1	13852	13852		20.871	1.4322	1		+		53630	21508	30702	30703	65654	65654					0.06493087690591892
VPLPAENVTI	10	Unmodified	_VPLPAENVTI_					0	0	0		ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.8031616210938	2	526.802957	1051.59136	0.48969	0.00025797	-1.0203	-0.00053752	-0.53066	-0.00027955	526.8023441690741	64.833	0.89211	64.833	64.539	65.431	0					73	32	3	0	0	0	0.025736	3	16115	16115;16123;16195		65.474	31.072	1	1312800			53631	4531	30703	30704	65655;65656;65657	65655					0.06762896274517516
VPLPAENVTI	10	Unmodified	_VPLPAENVTI_					0	0	0		ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8019409179688	2	526.802957	1051.59136	0.51319	0.00027035	-0.94684	-0.0004988	-0.43365	-0.00022845	526.8023250870302	64.742	0.82968	64.835	64.582	65.412	0.09288					69	30	3	0	0	0	0.058058	2	16077	16077;16126		57.249	15.409	1	1500500			53632	4531	30703	30704	65658;65659	65658					0.06762896274517516
VPLPAENVTI	10	Unmodified	_VPLPAENVTI_					0	0	0		ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8024291992188	2	526.802957	1051.59136	0.42969	0.00022636	-1.1576	-0.00060982	-0.7279	-0.00038346	526.8022842650654	64.848	0.7697	64.837	64.579	65.349	-0.010696					64	27	3	0	0	0	0.025736	3	16125	16089;16106;16125		65.474	23.634	1	1321300			53633	4531	30703	30704	65660;65661;65662	65662					0.06762896274517516
VPLPFDPVL	9	Unmodified	_VPLPFDPVL_					0	0	0			REV__PPP1R3D|p.P161L|1|0.2|ENSG00000132825|chr20:59939450-59939450|G/A|missense_variant	REV__PPP1R3D|p.P161L|1|0.2|ENSG00000132825|chr20:59939450-59939450|G/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7911376953125	2	498.791861	995.569169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.008	1	82.008	81.508	82.508	0								0	0	0	0.15265	1	21388	21388		34.102	1.797	1		+		53634	23291	30704	30705	65663	65663					0.07120716596739385
VPLPFDPVL	9	Unmodified	_VPLPFDPVL_					0	0	0			REV__PPP1R3D|p.P161L|1|0.2|ENSG00000132825|chr20:59939450-59939450|G/A|missense_variant	REV__PPP1R3D|p.P161L|1|0.2|ENSG00000132825|chr20:59939450-59939450|G/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7909851074219	2	498.791861	995.569169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.151	1	82.151	81.651	82.651	0								0	0	0	0.083439	1	21433	21433		50.855	2.5092	1		+		53635	23291	30704	30705	65664	65664					0.07120716596739385
VPLPFDPVL	9	Unmodified	_VPLPFDPVL_					0	0	0			REV__PPP1R3D|p.P161L|1|0.2|ENSG00000132825|chr20:59939450-59939450|G/A|missense_variant	REV__PPP1R3D|p.P161L|1|0.2|ENSG00000132825|chr20:59939450-59939450|G/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7912292480469	2	498.791861	995.569169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.3	1	82.3	81.8	82.8	0								0	0	0	0.051692	1	21479	21479		60.39	18.295	1		+		53636	23291	30704	30705	65665	65665					0.07120716596739385
VPLPFDPVL	9	Unmodified	_VPLPFDPVL_					0	0	0			REV__PPP1R3D|p.P161L|1|0.2|ENSG00000132825|chr20:59939450-59939450|G/A|missense_variant	REV__PPP1R3D|p.P161L|1|0.2|ENSG00000132825|chr20:59939450-59939450|G/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7912902832031	2	498.791861	995.569169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.459	1	82.459	81.959	82.959	0								0	0	0	0.14428	1	21528	21528		36.044	3.7387	1		+		53637	23291	30704	30705	65666	65666					0.07120716596739385
VPLPNVPSI	9	Unmodified	_VPLPNVPSI_					0	0	0		nc|ENSG00000258469|P59074|CHMP4BP1;ENSG00000101421|ENST00000217402|CHMP4B	nc|ENSG00000258469|P59074|CHMP4BP1	nc|ENSG00000258469|P59074|CHMP4BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.28167724609375	2	468.28166	934.548768	0.052213	2.445E-05	0.10471	4.9035E-05	0.15692	7.3485E-05	468.28159702108985	70.26	1.3975	70.26	69.618	71.015	0					132	50	4	0	0	0	0.0022761	5	17797	17748;17797;17848;17902;17956		108	46.64	1	4424400			53638	1698	30705	30706	65667;65668;65669;65670;65671	65668					0.07887545936955576
VPLPNVPSI	9	Unmodified	_VPLPNVPSI_					0	0	0		nc|ENSG00000258469|P59074|CHMP4BP1;ENSG00000101421|ENST00000217402|CHMP4B	nc|ENSG00000258469|P59074|CHMP4BP1	nc|ENSG00000258469|P59074|CHMP4BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.28167724609375	2	468.28166	934.548768	0.086851	4.0671E-05	0.043952	2.0582E-05	0.1308	6.1253E-05	468.2815794503388	70.188	1.1663	70.254	69.826	70.993	0.066048					111	41	4	0	0	0	0.0011817	5	17824	17732;17783;17824;17876;17920		120.45	49.317	1	4527500			53639	1698	30705	30706	65672;65673;65674;65675;65676	65674					0.07887545936955576
VPLPNVPSI	9	Unmodified	_VPLPNVPSI_					0	0	0		nc|ENSG00000258469|P59074|CHMP4BP1;ENSG00000101421|ENST00000217402|CHMP4B	nc|ENSG00000258469|P59074|CHMP4BP1	nc|ENSG00000258469|P59074|CHMP4BP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.28167724609375	2	468.28166	934.548768	0.24563	0.00011503	-0.13716	-6.4229E-05	0.10847	5.0796E-05	468.2815084536936	70.283	1.3509	70.261	69.701	71.052	-0.022087					122	48	4	0	0	0	0.00094673	5	17794	17743;17794;17842;17885;17932		123.45	55.37	1	4864600			53640	1698	30705	30706	65677;65678;65679;65680;65681	65678					0.07887545936955576
VPLPPPMAI	9	Oxidation (M)	_VPLPPPM(Oxidation (M))AI_		VPLPPPM(1)AI		VPLPPPM(56)AI	0	0	1		nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;ENST00000515710.1_1_5:14441357-14465986:+|nuORF;TRIO|p.D1887Lfs*10|1|0.26|ENSG00000038382|chr5:14462916-14462917|-/TT|frameshift_variant;ENST00000515144.5_1_5:14293150-14488426:+|nuORF;nc|ENSG00000038382|O75962-5|TRIO	nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.772705078125	2	475.772614	949.530675	0.11091	5.2768E-05	0.30516	0.00014519	0.41607	0.00019795	475.77266101462806	59.071	1.4823	59.071	58.439	59.922	0					87	51	2	0	0	0	0.041522	2	14328	14328;14393		56.048	32.9	1	316020			53641	590	30706	30707	65682;65683	65682		70			0.05389087690593897
VPLPPPMAI	9	Oxidation (M)	_VPLPPPM(Oxidation (M))AI_		VPLPPPM(1)AI		VPLPPPM(56)AI	0	0	1		nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;ENST00000515710.1_1_5:14441357-14465986:+|nuORF;TRIO|p.D1887Lfs*10|1|0.26|ENSG00000038382|chr5:14462916-14462917|-/TT|frameshift_variant;ENST00000515144.5_1_5:14293150-14488426:+|nuORF;nc|ENSG00000038382|O75962-5|TRIO	nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.77252197265625	2	475.772614	949.530675	0.26894	0.00012795	0.27005	0.00012848	0.53899	0.00025643	475.7727138306281	58.889	1.2637	58.98	58.474	59.737	0.091301					76	44	2	0	0	0	0.041522	1	14280	14280		56.048	31.838	1	363870			53642	590	30706	30707	65684	65684		70			0.05389087690593897
VPLPPPMAI	9	Oxidation (M)	_VPLPPPM(Oxidation (M))AI_		VPLPPPM(1)AI		VPLPPPM(46)AI	0	0	1		nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;ENST00000515710.1_1_5:14441357-14465986:+|nuORF;TRIO|p.D1887Lfs*10|1|0.26|ENSG00000038382|chr5:14462916-14462917|-/TT|frameshift_variant;ENST00000515144.5_1_5:14293150-14488426:+|nuORF;nc|ENSG00000038382|O75962-5|TRIO	nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.773193359375	2	475.772614	949.530675	0.38646	0.00018387	-0.047257	-2.2483E-05	0.33921	0.00016138	475.7724466498668	58.979	1.5344	58.965	58.25	59.785	-0.014267					88	54	2	0	0	0	0.069231	1	14372	14372		45.75	19.409	1	317450			53643	590	30706	30707	65685	65685		70			0.05389087690593897
VPLPRIPTV	9	Unmodified	_VPLPRIPTV_					0	0	0		ENST00000261811.5_1_5:139554802-139574226:+|nuORF	ENST00000261811.5_1_5:139554802-139574226:+|nuORF	ENST00000261811.5_1_5:139554802-139574226:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7818908691406	2	496.318577	990.622602	0.59607	0.00029584	-0.33389	-0.00016572	0.26218	0.00013012	496.318263183871	60.512	0.64455	60.512	60.175	60.819	0					53	23	3	0	0	0	0.14646	1	14872	14872		43.772	14.691	1	752250			53644	8978	30707	30708	65686	65686					0.12691514099265078
VPLPRIPTV	9	Unmodified	_VPLPRIPTV_					0	0	0		ENST00000261811.5_1_5:139554802-139574226:+|nuORF	ENST00000261811.5_1_5:139554802-139574226:+|nuORF	ENST00000261811.5_1_5:139554802-139574226:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.78179931640625	2	496.318577	990.622602	0.37422	0.00018573	-0.36463	-0.00018097	0.0095842	4.7568E-06	496.3183075086165	60.366	0.81733	60.461	60.077	60.894	0.095093					51	29	2	0	0	0	0.13643	1	14850	14850		45.7	20.3	1	1120000			53645	8978	30707	30708	65687	65687					0.12691514099265078
VPLPRIPTV	9	Unmodified	_VPLPRIPTV_					0	0	0		ENST00000261811.5_1_5:139554802-139574226:+|nuORF	ENST00000261811.5_1_5:139554802-139574226:+|nuORF	ENST00000261811.5_1_5:139554802-139574226:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.78179931640625	2	496.318577	990.622602	0.56118	0.00027852	-0.4528	-0.00022473	0.10838	5.3789E-05	496.31831453896103	60.503	0.70145	60.493	60.11	60.811	-0.009922					47	25	2	0	0	0	0.075169	1	14859	14859		53.833	21.527	1	1046600			53646	8978	30707	30708	65688	65688					0.12691514099265078
VPLPRLLEV	9	Unmodified	_VPLPRLLEV_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.331787109375	2	518.331685	1034.64882	0.37965	0.00019678	-0.16074	-8.3316E-05	0.21891	0.00011347	518.331522150536	67.524	0.74911	67.524	67.193	67.942	0					68	25	3	0	0	0	0.026579	2	16931	16931;16980		61.602	21.652	1	1641200			53647	2512	30708	30709	65689;65690	65689					0.1328778327076634
VPLPRLLEV	9	Unmodified	_VPLPRLLEV_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3316650390625	2	518.331685	1034.64882	0.37545	0.00019461	-0.17756	-9.2033E-05	0.19789	0.00010257	518.3315124741039	67.443	0.92829	67.521	67.094	68.023	0.078041					75	32	3	0	0	0	0.020233	2	16886	16886;16934		63.961	19.762	1	1688300			53648	2512	30708	30709	65691;65692	65691					0.1328778327076634
VPLPRLLEV	9	Unmodified	_VPLPRLLEV_					0	0	0		ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155	ENSG00000113569|ENST00000231498|NUP155	ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3316650390625	2	518.331685	1034.64882	0.20004	0.00010369	0.13542	7.0193E-05	0.33546	0.00017388	518.3316495513753	67.56	0.75991	67.544	67.181	67.941	-0.016296					65	25	3	0	0	0	0.026579	3	16925	16925;16973;17026		61.602	21.652	1	1438100			53649	2512	30708	30709	65693;65694;65695	65693					0.1328778327076634
VPLQEENR	8	Unmodified	_VPLQEENR_					0	0	0		ENST00000263780.8_1_3:87276503-87276704:+|nuORF;ENST00000471660.5_1_3:87276503-87294867:+|nuORF	ENST00000263780.8_1_3:87276503-87276704:+|nuORF	ENST00000263780.8_1_3:87276503-87276704:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.673828125	2	492.759081	983.503609	0.17475	8.6108E-05	-0.48161	-0.00023732	-0.30686	-0.00015121	492.75897964439537	17.283	0.26608	17.165	16.965	17.231	-0.11739					12	9	2	0	0	0	0.34272	1	1541	1541		7.9102	1.187	1	30382			53650	9013	30709	30710	65696	65696					0.011196954037586693
VPLQRLSL	8	Unmodified	_VPLQRLSL_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.78900146484375	2	463.295102	924.575651	0.041976	1.9447E-05	0.25301	0.00011722	0.29499	0.00013667	463.29510658228	57.522	0.43027	57.504	57.259	57.69	-0.0172					19	15	2	0	0	0	0.31375	1	13852	13852		19.439	0	1	182260			53651	5953	30710	30711	65697	65697					0.11034654548143408
VPLQRSLEI	9	Unmodified	_VPLQRSLEI_					0	0	0		NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant;ENSG00000113971|ENST00000337331|NPHP3;nc|ENSG00000113971|Q7Z494-2|NPHP3;ENST00000471702.2_2_3:132363653-132416205:-|nuORF;ENST00000474871.5_1_3:132405102-132413706:-|nuORF	NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant	NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2760009765625	2	527.816399	1053.61824	0.41035	0.00021659	0.045767	2.4157E-05	0.45611	0.00024074	527.8165808567302	49.098	0.76321	49.143	48.906	49.669	0.044891					57	27	3	0	0	0	0.1335	1	11340	11340		47.594	5.7548	1	1282100			53652	2541	30711	30712	65698	65698					0.09358004885712035
VPLQRSLEI	9	Unmodified	_VPLQRSLEI_					0	0	0		NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant;ENSG00000113971|ENST00000337331|NPHP3;nc|ENSG00000113971|Q7Z494-2|NPHP3;ENST00000471702.2_2_3:132363653-132416205:-|nuORF;ENST00000474871.5_1_3:132405102-132413706:-|nuORF	NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant	NPHP3|p.K1247Rfs*18|1|0.22|ENSG00000113971|chr3:132682775-132682775|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2760009765625	2	527.816399	1053.61824	0.33703	0.00017789	0.16049	8.471E-05	0.49753	0.0002626	527.8165469829762	49.039	0.69609	49.071	48.878	49.574	0.032047					58	24	3	0	0	0	0.11018	1	11311	11311		53.404	5.6553	1	1270200			53653	2541	30711	30712	65699	65699					0.09358004885712035
VPLRRDQTI	9	Unmodified	_VPLRRDQTI_					0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3251953125	2	549.324922	1096.63529	0.19993	0.00010983	-1.322	-0.00072623	-1.1221	-0.0006164	549.3254618302374	25.654	0.5671	25.631	25.356	25.923	-0.022238					45	19	4	0	0	0	0.2719	1	4117	4117		13.042	4.2971	1	278360			53654	6717	30712	30713	65700	65700					0.0908392549151813
VPLRVLLV	8	Unmodified	_VPLRVLLV_					0	0	0		ENSG00000160539|ENST00000372264|PLPP7	ENSG00000160539|ENST00000372264|PLPP7	ENSG00000160539|ENST00000372264|PLPP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.81805419921875	2	454.818213	907.621873	0.1462	6.6496E-05	0.0057764	2.6272E-06	0.15198	6.9124E-05	454.81811547472716	62.987	0.4802	62.987	62.776	63.256	0					40	17	3	0	0	0	0.20518	1	15567	15567		42.095	6.0504	1	413390			53655	5468	30713	30714	65701	65701					0.16436719450223336
VPLRVLLV	8	Unmodified	_VPLRVLLV_					0	0	0		ENSG00000160539|ENST00000372264|PLPP7	ENSG00000160539|ENST00000372264|PLPP7	ENSG00000160539|ENST00000372264|PLPP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.8182067871094	2	454.818213	907.621873	0.2356	0.00010716	-0.11637	-5.2928E-05	0.11923	5.4229E-05	454.8180219762524	62.896	0.6526	62.991	62.712	63.365	0.095722					42	23	3	0	0	0	0.27124	1	15529	15529		34.102	1.9855	1	464360			53656	5468	30713	30714	65702	65702					0.16436719450223336
VPLRVLLV	8	Unmodified	_VPLRVLLV_					0	0	0		ENSG00000160539|ENST00000372264|PLPP7	ENSG00000160539|ENST00000372264|PLPP7	ENSG00000160539|ENST00000372264|PLPP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.818115234375	2	454.818213	907.621873	0.099601	4.53E-05	-0.13796	-6.2749E-05	-0.038364	-1.7449E-05	454.81809984124027	62.966	0.56651	62.958	62.731	63.297	-0.0085564					35	20	2	0	0	0	0.25425	1	15560	15560		36.044	5.8194	1	378770			53657	5468	30713	30714	65703	65703					0.16436719450223336
VPLRVSAVI	9	Unmodified	_VPLRVSAVI_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.3106994628906	2	477.310752	952.606951	0.27748	0.00013244	-0.39684	-0.00018942	-0.11937	-5.6975E-05	477.3104390462267	53.169	1.5596	53.169	52.875	54.435	0					93	57	3	0	0	0	0.012386	1	12540	12540		75.761	27.415	1	947960			53658	551	30714	30715	65704	65704					0.12875227582219395
VPLRVSAVI	9	Unmodified	_VPLRVSAVI_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.3105773925781	2	477.310752	952.606951	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.168	1	53.224	52.724	53.724	0.056255								0	0	0	0.060574	1	12533	12533		57.722	9.9733	1				53659	551	30714	30715	65705	65705					0.12875227582219395
VPLRVSAVI	9	Unmodified	_VPLRVSAVI_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.3106689453125	2	477.310752	952.606951	0.32255	0.00015396	-0.48094	-0.00022956	-0.15839	-7.5601E-05	477.3103729876652	53.221	2.3	53.212	52.631	54.931	-0.0096054					136	84	4	0	0	0	0.058995	1	12539	12539		49.554	5.7819	1	1363900			53660	551	30714	30715	65706	65706					0.12875227582219395
VPLRVSPYV	9	Unmodified	_VPLRVSPYV_					0	0	0		nc|ENSG00000068079|P80217-2|IFI35;ENSG00000068079|ENST00000415816|IFI35	nc|ENSG00000068079|P80217-2|IFI35	nc|ENSG00000068079|P80217-2|IFI35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.8367919921875	2	515.30821	1028.60187	0.3717	0.00019154	0.63108	0.0003252	1.0028	0.00051674	515.810249349756	49.738	0.67763	49.738	49.488	50.166	0					55	24	3	0	0	0	0.19686	1	11441	11441		24.991	9.1438	1	904150			53661	875	30715	30716	65707	65707					0.08870923719587154
VPLRVSPYV	9	Unmodified	_VPLRVSPYV_					0	0	0		nc|ENSG00000068079|P80217-2|IFI35;ENSG00000068079|ENST00000415816|IFI35	nc|ENSG00000068079|P80217-2|IFI35	nc|ENSG00000068079|P80217-2|IFI35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.8367309570312	2	515.30821	1028.60187	0.16661	8.5857E-05	1.1672	0.00060147	1.3338	0.00068733	515.8105827958267	49.706	0.95446	49.727	49.11	50.064	0.020691					70	34	4	0	0	0	0.20881	1	11431	11431		27.629	5.8822	1	884590			53662	875	30715	30716	65708	65708					0.08870923719587154
VPLSQVKSI	9	Unmodified	_VPLSQVKSI_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8004150390625	2	485.800217	969.585882	0.46173	0.00022431	-0.11398	-5.537E-05	0.34776	0.00016894	485.80019119057505	40.034	1.021	40.127	39.803	40.824	0.09267					51	36	2	0	0	0	0.14306	1	8483	8483		45.74	7.5643	1	292710			53663	6992	30716	30717	65709	65709					0.09987217482705546
VPLSQVKSI	9	Unmodified	_VPLSQVKSI_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	485.800217	969.585882	0.22082	0.00010727	0.22023	0.00010699	0.44105	0.00021426	485.80026180987664	40.164	0.58477	40.164	39.803	40.388	0	0.03327	0.00021182	NaN	45.74	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202100			53664	6992	30716	30717							0.09987217482705546
VPLSQVKSI	9	Unmodified	_VPLSQVKSI_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	485.800217	969.585882	0.37096	0.00018021	-0.046714	-2.2694E-05	0.32425	0.00015752	485.8001927909211	40.002	1.2408	40.101	39.565	40.806	0.099407	-0.029361	-4.7538E-05	NaN	45.74	72	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327660			53665	6992	30716	30717							0.09987217482705546
VPLTPRVNI	9	Unmodified	_VPLTPRVNI_					0	0	0		ENSG00000122547|ENST00000242108|EEPD1	ENSG00000122547|ENST00000242108|EEPD1	ENSG00000122547|ENST00000242108|EEPD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.27716064453125	2	504.813659	1007.61277	0.91621	0.00046251	-0.61962	-0.00031279	0.29659	0.00014972	504.81350124964547	50.313	0.49411	50.358	50.108	50.602	0.044891					39	17	3	0	0	0	0.10135	1	11660	11660		52.268	0.63854	1	371170			53666	3050	30717	30718	65710	65710					0.10926326093886018
VPLVGKLGL	9	Unmodified	_VPLVGKLGL_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.7871398925781	2	448.302396	894.590239	0.097142	4.3549E-05	0.39421	0.00017672	0.49135	0.00022027	448.30257985818935	60.29	0.24033	60.279	60.137	60.378	-0.011486					12	8	2	0	0	0	0.19839	1	14707	14707		21.747	2.4897	1	140580			53667	4020	30718	30719	65711	65711					0.13872726696251902
VPLVLPLL	8	Unmodified	_VPLVLPLL_					0	0	0		nc|ENSG00000100399|Q6NUI6-2|CHADL;ENSG00000100399|ENST00000216241|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.3018493652344	2	432.301865	862.589176	-0.10295	-4.4504E-05	0.36741	0.00015883	0.26446	0.00011433	432.3019591237748	94.11	0.86268	94.197	93.904	94.767	0.08667					160	70	4	0	0	0	0.28567	1	25064	25064		32.454	0	1	1163400			53668	1588	30719	30720	65712	65712					0.1523851232738025
VPLVMDPEL	9	Unmodified	_VPLVMDPEL_					0	0	0			REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7730712890625	2	506.772811	1011.53107	0.3895	0.00019739	0.20175	0.00010224	0.59125	0.00029963	506.7728990286422	82.127	0.83688	82.127	81.919	82.756	0					69	30	3	0	0	0	0.17787	1	21428	21428		26.884	5.137	1	1866700	+		53669	18101	30720	30721	65713	65713					0.025764626197769758
VPLVMDPEL	9	Unmodified	_VPLVMDPEL_					0	0	0			REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.77337646484375	2	506.772811	1011.53107	0.19992	0.00010131	0.24484	0.00012408	0.44476	0.00022539	506.77296164800947	82.05	1.8896	82.119	80.95	82.84	0.068993					159	85	4	0	0	0	0.088391	1	21430	21430		39.957	11.47	1	2081700	+		53670	18101	30720	30721	65714	65714					0.025764626197769758
VPLVMDPEL	9	Unmodified	_VPLVMDPEL_					0	0	0			REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7732238769531	2	506.772811	1011.53107	0.37742	0.00019127	0.14901	7.5515E-05	0.52643	0.00026678	506.77288264315894	82.228	1.0473	82.204	81.743	82.79	-0.02404					107	41	4	0	0	0	0.17787	1	21459	21459		26.884	5.137	1	2455600	+		53671	18101	30720	30721	65715	65715					0.025764626197769758
VPLVMDPEL	9	Unmodified	_VPLVMDPEL_					0	0	0			REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	506.772811	1011.53107	0.3895	0.00019739	0.20175	0.00010224	0.59125	0.00029963	506.7728990286422	82.127	0.83688	82.127	81.919	82.756	0	-0.023158	1.1707E-05	NaN	39.957	69	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1866700	+		53672	18101	30720	30721							0.025764626197769758
VPLVNILLK	9	Unmodified	_VPLVNILLK_					0	0	0			REV__HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|7|1|sense	REV__HERVK9-int_dup528|chr12:105303345-105308170:-|3.533294869192112|0.2593681081056778|3.77|539.0|7|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7793884277344	2	504.844428	1007.6743	0.35373	0.00017858	-0.096122	-4.8527E-05	0.25761	0.00013005	504.8442820585051	68.859	0.35281	68.84	68.709	69.062	-0.019157					18	12	2	0	0	0	0.25526	1	17425	17425		7.9102	0	1	109600	+		53673	22761	30721	30722	65716	65716					0.17077257793175704
VPLVVLISI	9	Unmodified	_VPLVVLISI_					0	0	0		ENST00000461162.5_1_9:95887192-95893805:-|nuORF;ENSG00000131669|ENST00000375446|NINJ1	ENST00000461162.5_1_9:95887192-95893805:-|nuORF	ENST00000461162.5_1_9:95887192-95893805:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.8257751464844	2	476.825704	951.636855	-0.037511	-1.7886E-05	0.26949	0.0001285	0.23198	0.00011061	476.82570143723467	95.034	0.52724	95.034	94.817	95.344	0					102	45	3	0	0	0	0.079066	1	25350	25350		42.095	6.0504	1	275300			53674	3580	30722	30723	65717	65717					0.1591016652756707
VPLVVLISI	9	Unmodified	_VPLVVLISI_					0	0	0		ENST00000461162.5_1_9:95887192-95893805:-|nuORF;ENSG00000131669|ENST00000375446|NINJ1	ENST00000461162.5_1_9:95887192-95893805:-|nuORF	ENST00000461162.5_1_9:95887192-95893805:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.82562255859375	2	476.825704	951.636855	0.15923	7.5924E-05	-0.073978	-3.5275E-05	0.085249	4.0649E-05	476.82560561591964	94.874	0.54916	94.957	94.797	95.346	0.082779					118	51	3	0	0	0	0.079066	1	25313	25313		42.095	6.0504	1	403930			53675	3580	30722	30723	65718	65718					0.1591016652756707
VPLVVLISI	9	Unmodified	_VPLVVLISI_					0	0	0		ENST00000461162.5_1_9:95887192-95893805:-|nuORF;ENSG00000131669|ENST00000375446|NINJ1	ENST00000461162.5_1_9:95887192-95893805:-|nuORF	ENST00000461162.5_1_9:95887192-95893805:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.8258361816406	2	476.825704	951.636855	0.32646	0.00015566	-0.084431	-4.0259E-05	0.24203	0.00011541	476.8255739699909	95.045	0.65083	95.043	94.784	95.435	-0.0020142					120	56	4	0	0	0	0.079066	1	25381	25381		42.095	6.0504	1	236560			53676	3580	30722	30723	65719	65719					0.1591016652756707
VPMFRNVSL	9	Oxidation (M)	_VPM(Oxidation (M))FRNVSL_		VPM(1)FRNVSL		VPM(83)FRNVSL	0	0	1		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF;XPO1|p.F287Lfs*3|1|0.34|ENSG00000082898|chr2:61496906-61496906|A/-|frameshift_variant	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7896728515625	2	539.789327	1077.5641	0.9093	0.00049083	-0.15878	-8.5709E-05	0.75052	0.00040512	539.7892440381269	50.8	0.37813	50.8	50.544	50.922	0					42	13	4	0	0	0	0.0073901	2	11834	11786;11834		83.429	43.479	1	5750800			53677	1211	30723	30724	65720;65721	65721		144			0.028420894624787252
VPMFRNVSL	9	Oxidation (M)	_VPM(Oxidation (M))FRNVSL_		VPM(1)FRNVSL		VPM(93)FRNVSL	0	0	1		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF;XPO1|p.F287Lfs*3|1|0.34|ENSG00000082898|chr2:61496906-61496906|A/-|frameshift_variant	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7896728515625	2	539.789327	1077.5641	0.70372	0.00037986	-0.19249	-0.00010391	0.51123	0.00027595	539.7892118234217	51.12	0.96213	51.12	50.922	51.885	0					76	35	3	0	0	0	0.0042138	2	11927	11875;11927		92.653	50.814	1	5662300			53678	1211	30723	30724	65722;65723	65723		144			0.028420894624787252
VPMFRNVSL	9	Oxidation (M)	_VPM(Oxidation (M))FRNVSL_		VPM(1)FRNVSL		VPM(89)FRNVSL	0	0	1		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF;XPO1|p.F287Lfs*3|1|0.34|ENSG00000082898|chr2:61496906-61496906|A/-|frameshift_variant	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7897338867188	2	539.789327	1077.5641	0.80733	0.00043579	-0.060136	-3.2461E-05	0.74719	0.00040333	539.7893545036613	50.793	0.3816	50.84	50.604	50.985	0.046574					46	13	4	0	0	0	0.0046246	2	11831	11781;11831		89.401	49.451	1	5626900			53679	1211	30723	30724	65724;65725	65725		144			0.028420894624787252
VPMFRNVSL	9	Oxidation (M)	_VPM(Oxidation (M))FRNVSL_		VPM(1)FRNVSL		VPM(100)FRNVSL	0	0	1		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF;XPO1|p.F287Lfs*3|1|0.34|ENSG00000082898|chr2:61496906-61496906|A/-|frameshift_variant	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7896728515625	2	539.789327	1077.5641	0.56085	0.00030274	-0.070793	-3.8213E-05	0.49006	0.00026453	539.7892772060725	51.11	0.57085	51.157	50.957	51.528	0.046577					65	21	4	0	0	0	0.003317	2	11879	11879;11925		99.755	52.007	1	5981700			53680	1211	30723	30724	65726;65727	65726		144			0.028420894624787252
VPMFRNVSL	9	Oxidation (M)	_VPM(Oxidation (M))FRNVSL_		VPM(1)FRNVSL		VPM(100)FRNVSL	0	0	1		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF;XPO1|p.F287Lfs*3|1|0.34|ENSG00000082898|chr2:61496906-61496906|A/-|frameshift_variant	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7896118164062	2	539.789327	1077.5641	0.91637	0.00049464	-0.051208	-2.7642E-05	0.86516	0.000467	539.7893234696411	50.875	0.47335	50.885	50.621	51.094	0.0095634					54	17	4	0	0	0	0.003317	2	11838	11791;11838		99.755	59.806	1	5172100			53681	1211	30723	30724	65728;65729	65729		144			0.028420894624787252
VPMFRNVSL	9	Oxidation (M)	_VPM(Oxidation (M))FRNVSL_		VPM(1)FRNVSL		VPM(89)FRNVSL	0	0	1		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF;XPO1|p.F287Lfs*3|1|0.34|ENSG00000082898|chr2:61496906-61496906|A/-|frameshift_variant	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7896728515625	2	539.789327	1077.5641	0.67421	0.00036393	-0.1693	-9.1389E-05	0.50491	0.00027254	539.7892021782344	51.158	0.65075	51.168	51.016	51.666	0.0095673					62	24	3	0	0	0	0.0046246	2	11929	11886;11929		89.401	49.451	1	5725500			53682	1211	30723	30724	65730;65731	65731		144			0.028420894624787252
VPMHGKIL	8	Unmodified	_VPMHGKIL_					0	0	0		ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	ENSG00000183090|ENST00000329798|FREM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.7654113769531	2	447.765123	893.515694	0.21449	9.6042E-05	0.60148	0.00026932	0.81597	0.00036536	447.7653067114119	80.528	0.87998	80.528	80.267	81.147	0					87	39	3	0	0	0	0.45169	1	20998	20998		5.2307	0	1	1205900			53683	7344	30724	30725	65732	65732					0.06467640613254844
VPMKMLTLF	9	Unmodified	_VPMKMLTLF_					0	0	0			REV__ENSG00000132357|ENST00000254691|CARD6	REV__ENSG00000132357|ENST00000254691|CARD6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3113403320312	2	540.303224	1078.5919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.721	1	89.721	89.221	90.221	0								0	0	0	0.22377	1	23754	23754		14.838	2.3067	1		+		53684	15563	30725	30726	65733	65733					0.05574276398351685
VPMLSGTVPV	10	Unmodified	_VPMLSGTVPV_					0	0	0			REV__MUC4|p.P1936Lfs*6|1|0.08|ENSG00000145113|chr3:195785773-195785774|-/A|frameshift_variant	REV__MUC4|p.P1936Lfs*6|1|0.08|ENSG00000145113|chr3:195785773-195785774|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.8053283691406	2	500.280803	998.547053	0.029347	1.4682E-05	-0.15451	-7.7296E-05	-0.12516	-6.2615E-05	500.28012018535014	38.652	0.41496	38.652	38.488	38.903	0					24	14	2	0	0	0	0.25875	1	8085	8085		32.305	11.852	1	188530	+		53685	16278	30726	30727	65734	65734					0.04772168856698045
VPMLSGTVPV	10	Unmodified	_VPMLSGTVPV_					0	0	0			REV__MUC4|p.P1936Lfs*6|1|0.08|ENSG00000145113|chr3:195785773-195785774|-/A|frameshift_variant	REV__MUC4|p.P1936Lfs*6|1|0.08|ENSG00000145113|chr3:195785773-195785774|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.8052978515625	2	500.280803	998.547053	0.38299	0.0001916	-0.025466	-1.274E-05	0.35752	0.00017886	500.280085021229	38.596	0.42988	38.687	38.542	38.972	0.090885					21	15	2	0	0	0	0.25875	1	8064	8064		25.399	10.561	1	135680	+		53686	16278	30726	30727	65735	65735					0.04772168856698045
VPMLSGTVPV	10	Unmodified	_VPMLSGTVPV_					0	0	0			REV__MUC4|p.P1936Lfs*6|1|0.08|ENSG00000145113|chr3:195785773-195785774|-/A|frameshift_variant	REV__MUC4|p.P1936Lfs*6|1|0.08|ENSG00000145113|chr3:195785773-195785774|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8052062988281	2	500.280803	998.547053	0.4437	0.00022197	-0.53394	-0.00026712	-0.090241	-4.5146E-05	500.27998940015294	38.579	0.40259	38.676	38.465	38.867	0.097527					20	14	2	0	0	0	0.28434	1	8089	8089		25.399	8.3128	1	124750	+		53687	16278	30726	30727	65736	65736					0.04772168856698045
VPMSLLLPPL	10	Unmodified	_VPMSLLLPPL_					0	0	0		ENST00000460642.5_1_22:31502029-31503518:-|nuORF;ENST00000402395.5_1_22:31501939-31503518:-|nuORF;ENST00000491958.5_1_22:31502068-31503518:-|nuORF;ENST00000490967.5_1_22:31503065-31503518:-|nuORF	ENST00000460642.5_1_22:31502029-31503518:-|nuORF	ENST00000460642.5_1_22:31502029-31503518:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8186645507812	2	540.330296	1078.64604	0.64992	0.00035117	0.077765	4.2019E-05	0.72768	0.00039319	540.8316483340047	94.304	0.84863	94.302	93.674	94.523	-0.0020142					124	62	3	0	0	0	0.31745	1	24987	24987		7.9102	2.6795	1	172550			53688	10195	30727	30728	65737	65737					0.10986191821598368
VPMSLLLPPL	10	Unmodified	_VPMSLLLPPL_					0	0	0		ENST00000460642.5_1_22:31502029-31503518:-|nuORF;ENST00000402395.5_1_22:31501939-31503518:-|nuORF;ENST00000491958.5_1_22:31502068-31503518:-|nuORF;ENST00000490967.5_1_22:31503065-31503518:-|nuORF	ENST00000460642.5_1_22:31502029-31503518:-|nuORF	ENST00000460642.5_1_22:31502029-31503518:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	540.330296	1078.64604	0.41289	0.0002231	0.54325	0.00029353	0.95614	0.00051663	540.8320739083995	93.827	0.32236	93.914	93.682	94.004	0.08667	-0.19419	0.00035743	NaN	7.9102	31	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97940			53689	10195	30727	30728							0.10986191821598368
VPMTPLRTV	9	Oxidation (M)	_VPM(Oxidation (M))TPLRTV_		VPM(1)TPLRTV		VPM(110)TPLRTV	0	0	1		ENSG00000107949|ENST00000278100|BCCIP	ENSG00000107949|ENST00000278100|BCCIP	ENSG00000107949|ENST00000278100|BCCIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2918701171875	2	515.291702	1028.56885	0.24383	0.00012564	-0.18415	-9.4893E-05	0.059675	3.075E-05	515.2915979142351	38.256	1.0781	38.256	37.795	38.873	0					104	38	4	0	0	0	0.0023895	2	7951	7951;8003		107.1	41.865	1	2132500			53690	2156	30728	30729	65738;65739	65738		263			0.05570973605290419
VPMTPLRTV	9	Oxidation (M)	_VPM(Oxidation (M))TPLRTV_		VPM(1)TPLRTV		VPM(97)TPLRTV	0	0	1		ENSG00000107949|ENST00000278100|BCCIP	ENSG00000107949|ENST00000278100|BCCIP	ENSG00000107949|ENST00000278100|BCCIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2916259765625	2	515.291702	1028.56885	0.30892	0.00015918	-0.46029	-0.00023719	-0.15138	-7.8004E-05	515.29151879722	38.156	1.1804	38.247	37.821	39.001	0.090881					124	41	5	0	0	0	0.003673	2	7954	7905;7954		96.936	31.701	1	2231300			53691	2156	30728	30729	65740;65741	65741		263			0.05570973605290419
VPMTPLRTV	9	Oxidation (M)	_VPM(Oxidation (M))TPLRTV_		VPM(1)TPLRTV		VPM(110)TPLRTV	0	0	1		ENSG00000107949|ENST00000278100|BCCIP	ENSG00000107949|ENST00000278100|BCCIP	ENSG00000107949|ENST00000278100|BCCIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2918090820312	2	515.291702	1028.56885	0.17287	8.9077E-05	-0.19957	-0.00010284	-0.026706	-1.3761E-05	515.2916029631176	38.095	1.1837	38.192	37.768	38.951	0.097527					108	42	4	0	0	0	0.0023895	2	7887	7887;7938		107.1	41.865	1	2301700			53692	2156	30728	30729	65742;65743	65742		263			0.05570973605290419
VPNAGRGLVRL	11	Unmodified	_VPNAGRGLVRL_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3541870117188	2	576.354014	1150.69348	0.39438	0.0002273	0.028276	1.6297E-05	0.42266	0.0002436	576.3540188481919	38.281	0.92449	38.372	38.101	39.026	0.090885					92	33	4	0	0	0	0.00079344	1	7988	7988		99.755	65.354	1	4224800			53693	1634	30729	30730	65744	65744					0.12415607136813378
VPNAGRGLVRL	11	Unmodified	_VPNAGRGLVRL_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.354248046875	2	576.354014	1150.69348	0.24623	0.00014192	0.19867	0.00011451	0.4449	0.00025642	576.3540983250757	38.243	0.91481	38.341	38.037	38.951	0.097527					94	32	5	0	0	0	0.0002783	1	7964	7964		106.94	66.99	1	4299100			53694	1634	30729	30730	65745	65745					0.12415607136813378
VPNFTFNL	8	Unmodified	_VPNFTFNL_					0	0	0		ENSG00000166507|ENST00000309979|NDST2;ENST00000463410.1_1_10:75566827-75567228:-|nuORF;nc|ENSG00000166507|P52849-2|NDST2	ENSG00000166507|ENST00000309979|NDST2	ENSG00000166507|ENST00000309979|NDST2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.2850036621094	2	476.25036	950.486168	0.23547	0.00011214	-0.24236	-0.00011542	-0.0068904	-3.2816E-06	476.25017280134983	38.312	0.83306	38.409	37.845	38.678	0.097527					33	29	2	0	0	0	0.34198	1	8034	8034		6.7232	1.4925	1	112600			53695	6087	30730	30731	65746	65746					0.00894399868752771
VPNFTFNL	8	Unmodified	_VPNFTFNL_					0	0	0		ENSG00000166507|ENST00000309979|NDST2;ENST00000463410.1_1_10:75566827-75567228:-|nuORF;nc|ENSG00000166507|P52849-2|NDST2	ENSG00000166507|ENST00000309979|NDST2	ENSG00000166507|ENST00000309979|NDST2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	476.25036	950.486168	0.048722	2.3204E-05	0.23294	0.00011094	0.28166	0.00013414	476.25058085888514	38.125	0.48138	38.125	38.007	38.488	0	-0.14204	0.00020615	NaN	6.7232	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100120			53696	6087	30730	30731							0.00894399868752771
VPNGRQRPS	9	Unmodified	_VPNGRQRPS_					0	0	0			REV__ENST00000592905.5_1_19:45918043-45926632:-|nuORF	REV__ENST00000592905.5_1_19:45918043-45926632:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7783203125	2	505.778139	1009.54173	0.28156	0.00014241	0.21006	0.00010624	0.49163	0.00024865	505.7781135288874	21.799	0.78622	21.799	21.517	22.303	0					67	28	3	0	0	0	0.33911	1	2994	2994		2.9952	0.10602	1	300490	+		53697	13437	30731	30732	65747	65747					0.03733626109078614
VPNGRQRPS	9	Unmodified	_VPNGRQRPS_					0	0	0			REV__ENST00000592905.5_1_19:45918043-45926632:-|nuORF	REV__ENST00000592905.5_1_19:45918043-45926632:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7783203125	2	505.778139	1009.54173	0.32436	0.00016406	0.10059	5.0878E-05	0.42496	0.00021493	505.77815739515046	21.899	0.91905	21.799	21.471	22.39	-0.10034					75	33	4	0	0	0	0.3208	1	2983	2983		5.7319	0.50118	1	457990	+		53698	13437	30731	30732	65748	65748					0.03733626109078614
VPNGRQRPS	9	Unmodified	_VPNGRQRPS_					0	0	0			REV__ENST00000592905.5_1_19:45918043-45926632:-|nuORF	REV__ENST00000592905.5_1_19:45918043-45926632:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.7784423828125	2	505.778139	1009.54173	0.22059	0.00011157	0.3171	0.00016038	0.53769	0.00027195	505.7782281907513	21.875	0.97644	21.826	21.52	22.496	-0.049377					88	34	4	0	0	0	0.3208	1	3001	3001		5.7319	5.7319	1	424640	+		53699	13437	30731	30732	65749	65749					0.03733626109078614
VPNLEIPTV	9	Unmodified	_VPNLEIPTV_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.28436279296875	2	491.2844	980.554247	0.40316	0.00019807	-0.0076316	-3.7493E-06	0.39553	0.00019432	491.2842855990093	71.589	1.2442	71.589	71.262	72.506	0					83	44	3	0	0	0	0.0083926	1	18224	18224		81.89	16.655	1	588230			53700	5722	30732	30733	65750	65750					0.06319224728758854
VPNLEIPTV	9	Unmodified	_VPNLEIPTV_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.7861328125	2	491.2844	980.554247	0.37274	0.00018312	0.22566	0.00011086	0.5984	0.00029398	491.28429201402105	71.529	1.3108	71.586	71.293	72.604	0.056572					74	47	3	0	0	0	0.014888	1	18205	18205		71.922	14.2	1	870450			53701	5722	30732	30733	65751	65751					0.06319224728758854
VPNLEIPTV	9	Unmodified	_VPNLEIPTV_					0	0	0		ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF	ENSG00000163694|ENST00000295971|RBM47	ENSG00000163694|ENST00000295971|RBM47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2843017578125	2	491.2844	980.554247	0.42741	0.00020998	-0.093472	-4.5921E-05	0.33393	0.00016406	491.2842844089729	71.646	1.1399	71.618	71.288	72.428	-0.027275					63	40	2	0	0	0	0.0059482	1	18223	18223		85.642	9.8807	1	879830			53702	5722	30732	30733	65752	65752					0.06319224728758854
VPNLKPIF	8	Unmodified	_VPNLKPIF_					0	0	0		ENSG00000017797|ENST00000383432|RALBP1	ENSG00000017797|ENST00000383432|RALBP1	ENSG00000017797|ENST00000383432|RALBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.29937744140625	2	464.286746	926.558939	0.22544	0.00010467	3.0171	0.0014008	3.2425	0.0015055	464.2879791980558	40.267	0.54524	40.359	40.2	40.745	0.09267					28	19	2	0	0	0	0.33245	1	8534	8534		4.756	2.4533	1	144530			53703	490	30733	30734	65753	65753					0.09272153662163873
VPNMQGPLA	9	Unmodified	_VPNMQGPLA_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.79266357421875	2	463.741845	925.469137	-0.16472	-7.6388E-05	0.066395	3.079E-05	-0.098326	-4.5598E-05	463.7418717567017	26.035	0.37125	26.035	25.9	26.271	0					14	12	2	0	0	0	0.25417	1	4196	4196		8.5933	0.68312	1	88500	+		53704	14878	30734	30735	65754	65754					0.0034215599130220653
VPNNKITVV	9	Unmodified	_VPNNKITVV_					0	0	0		ENSG00000111716|ENST00000350669|LDHB;ENST00000544151.1_1_12:21807353-21810687:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2980651855469	2	492.297842	982.581131	-0.96557	-0.00047535	0.20654	0.00010168	-0.75903	-0.00037367	492.2979193219714	34.698	0.96585	34.698	34.446	35.412	0					71	34	3	0	0	0	0.015924	2	6862	6862;6912		70.332	24.617	1	617690			53705	2384	30735	30736	65755;65756	65755					0.08914333339930636
VPNNKITVV	9	Unmodified	_VPNNKITVV_					0	0	0		ENSG00000111716|ENST00000350669|LDHB;ENST00000544151.1_1_12:21807353-21810687:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.2977600097656	2	492.297842	982.581131	-1.1185	-0.00055064	0.24191	0.00011909	-0.8766	-0.00043155	492.2978794812936	34.687	1.1001	34.763	34.353	35.454	0.075306					80	39	3	0	0	0	0.015924	2	6837	6837;6882		70.332	17.327	1	680700			53706	2384	30735	30736	65757;65758	65757					0.08914333339930636
VPNNKITVV	9	Unmodified	_VPNNKITVV_					0	0	0		ENSG00000111716|ENST00000350669|LDHB;ENST00000544151.1_1_12:21807353-21810687:-|nuORF	ENSG00000111716|ENST00000350669|LDHB	ENSG00000111716|ENST00000350669|LDHB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.2979736328125	2	492.297842	982.581131	-0.40003	-0.00019693	-0.40949	-0.00020159	-0.80952	-0.00039853	492.2975653971822	34.624	0.97151	34.701	34.336	35.308	0.077377					82	34	3	0	0	0	0.017549	2	6808	6808;6857		67.838	25.883	1	630120			53707	2384	30735	30736	65759;65760	65759					0.08914333339930636
VPNPRIKLI	9	Unmodified	_VPNPRIKLI_					0	0	0		nc|ENSG00000167657|O43293-2|DAPK3;ENSG00000167657|ENST00000545797|DAPK3	nc|ENSG00000167657|O43293-2|DAPK3	nc|ENSG00000167657|O43293-2|DAPK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2852172851562	2	525.345126	1048.6757	0.5031	0.0002643	-0.25589	-0.00013443	0.24721	0.00012987	525.3448879297026	42.974	0.13227	42.974	42.902	43.034	0					6	4	2	0	0	0	0.24913	1	9410	9410		7.9102	0	1	96638			53708	6195	30736	30737	65761	65761					0.15330891881944808
VPNPRIKLI	9	Unmodified	_VPNPRIKLI_					0	0	0		nc|ENSG00000167657|O43293-2|DAPK3;ENSG00000167657|ENST00000545797|DAPK3	nc|ENSG00000167657|O43293-2|DAPK3	nc|ENSG00000167657|O43293-2|DAPK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2850341796875	2	525.345126	1048.6757	0.26211	0.0001377	-0.10138	-5.326E-05	0.16073	8.4437E-05	525.3450103086667	42.761	0.15542	42.852	42.772	42.928	0.091358					7	5	2	0	0	0	0.24311	1	9345	9345		16.942	8.349	1	82262			53709	6195	30736	30737	65762	65762					0.15330891881944808
VPNQKRLTL	9	Unmodified	_VPNQKRLTL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.8298950195312	2	534.82984	1067.64513	0.2425	0.00012969	0.34543	0.00018474	0.58792	0.00031444	534.8299955613895	27.593	0.91423	27.593	27.266	28.181	0					84	31	3	0	0	0	0.00010125	1	4667	4667		140.63	85.86	1	1148000			53710	882	30737	30738	65763	65763					0.11401113496890503
VPNQKRLTL	9	Unmodified	_VPNQKRLTL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.8306884765625	2	534.82984	1067.64513	0.038442	2.056E-05	0.55083	0.0002946	0.58927	0.00031516	534.8300659978495	27.569	0.9882	27.548	27.215	28.204	-0.021412					85	34	3	0	0	0	0.0028542	1	4659	4659		103.42	63.462	1	1333200			53711	882	30737	30738	65764	65764					0.11401113496890503
VPNQKRLTL	9	Unmodified	_VPNQKRLTL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.830078125	2	534.82984	1067.64513	0.14743	7.8849E-05	0.42184	0.00022561	0.56927	0.00030446	534.8300193488038	27.548	1.0164	27.537	27.266	28.282	-0.01156					90	35	3	0	0	0	0.0010968	2	4709	4658;4709		121.53	75.513	1	1330200			53712	882	30737	30738	65765;65766	65766					0.11401113496890503
VPNQKRLTLL	10	Unmodified	_VPNQKRLTLL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.3720703125	2	591.371872	1180.72919	0.47075	0.00027839	-0.077808	-4.6013E-05	0.39295	0.00023238	591.3717455086762	37.977	1.2837	37.977	37.532	38.816	0					121	45	4	0	0	0	1.5674E-06	4	7924	7833;7880;7924;7973		155.95	98.232	1	3823400			53713	882	30738	30739	65767;65768;65769;65770	65769					0.14605644593802936
VPNQKRLTLL	10	Unmodified	_VPNQKRLTLL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.3720703125	2	591.371872	1180.72919	0.4562	0.00026978	-0.043857	-2.5936E-05	0.41234	0.00024385	591.3717744844507	37.896	1.4218	37.987	37.308	38.73	0.090881					111	37	4	0	0	0	1.5674E-06	4	7898	7808;7853;7898;7951		155.95	89.497	1	3349400			53714	882	30738	30739	65771;65772;65773;65774	65773					0.14605644593802936
VPNQKRLTLL	10	Unmodified	_VPNQKRLTLL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.3721313476562	2	591.371872	1180.72919	0.35206	0.0002082	0.05412	3.2005E-05	0.40618	0.0002402	591.371832790885	37.833	1.0974	37.93	37.552	38.65	0.097527					121	39	4	0	0	0	8.7593E-06	4	7827	7783;7827;7869;7927		151.48	91.406	1	3327900			53715	882	30738	30739	65775;65776;65777;65778	65776					0.14605644593802936
VPNRIIEI	8	Unmodified	_VPNRIIEI_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.2926025390625	2	477.292559	952.570566	0.3784	0.00018061	-0.016219	-7.741E-06	0.36219	0.00017287	477.2925258840687	48.215	0.81092	48.215	47.987	48.798	0					73	28	4	0	0	0	0.12475	1	11049	11049		56.177	3.9087	1	3202900			53716	5701	30739	30740	65779	65779					0.09238350685518526
VPNRIIEI	8	Unmodified	_VPNRIIEI_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.29266357421875	2	477.292559	952.570566	0.63513	0.00030314	-0.34214	-0.0001633	0.29299	0.00013984	477.292376210714	48.24	0.85968	48.287	47.994	48.854	0.04752					86	31	4	0	0	0	0.063256	1	11038	11038		71.922	10.565	1	3316800			53717	5701	30739	30740	65780	65780					0.09238350685518526
VPNRIIEI	8	Unmodified	_VPNRIIEI_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.2928161621094	2	477.292559	952.570566	0.48368	0.00023086	-0.060101	-2.8686E-05	0.42358	0.00020217	477.29249309091324	48.18	0.85275	48.224	47.987	48.839	0.043324					82	31	4	0	0	0	0.077335	1	11022	11022		65.235	3.8776	1	3386200			53718	5701	30739	30740	65781	65781					0.09238350685518526
VPNTLRLEL	9	Unmodified	_VPNTLRLEL_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.8167114257812	2	527.816399	1053.61824	0.46245	0.00024409	0.23495	0.00012401	0.69741	0.0003681	527.8165386211904	57.693	1.2064	57.778	57.465	58.671	0.085621					67	43	2	0	0	0	0.097101	1	13990	13990		57.249	26.613	1	2533600			53719	1332	30740	30741	65782	65782					0.09358004885712035
VPNTLRLEL	9	Unmodified	_VPNTLRLEL_					0	0	0		nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	527.816399	1053.61824	0.48547	0.00025624	0.29754	0.00015705	0.783	0.00041328	527.8165565912277	57.867	1.0465	57.867	57.578	58.624	0	0.019157	1.8588E-05	NaN	57.249	58	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2441100			53720	1332	30740	30741							0.09358004885712035
VPPAALISI	9	Unmodified	_VPPAALISI_					0	0	0		TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1	TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant	TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.77862548828125	2	440.778754	879.542954	0.18898	8.3299E-05	-0.33433	-0.00014737	-0.14535	-6.4068E-05	440.77855918093263	71.564	0.6711	71.564	71.292	71.963	0					42	23	2	0	0	0	0.015674	1	18213	18213		70.716	26.309	1	406730			53721	1724	30741	30742	65783	65783					0.09836447425288952
VPPAALISI	9	Unmodified	_VPPAALISI_					0	0	0		TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1	TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant	TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.778564453125	2	440.778754	879.542954	0.13017	5.7376E-05	-0.14989	-6.6069E-05	-0.01972	-8.6922E-06	440.7786324821675	71.455	1.3352	71.511	71.269	72.604	0.056572					68	48	2	0	0	0	0.048175	1	18167	18167		53.576	9.1686	1	307790			53722	1724	30741	30742	65784	65784					0.09836447425288952
VPPAALISI	9	Unmodified	_VPPAALISI_					0	0	0		TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X;ENSG00000177565|ENST00000457928|TBL1XR1	TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant	TBL1X|p.G268Afs*7|1|0.28|ENSG00000101849|chrX:9692162-9692162|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.7788391113281	2	440.778754	879.542954	0.24572	0.00010831	-0.32144	-0.00014169	-0.075728	-3.3379E-05	440.7785150873871	71.532	1.1625	71.505	71.236	72.398	-0.027275					62	41	2	0	0	0	0.015674	1	18189	18189		70.716	17.14	1	488670			53723	1724	30741	30742	65785	65785					0.09836447425288952
VPPALGRK	8	Unmodified	_VPPALGRK_					0	0	0		ENST00000515399.5_1_4:1235165-1243600:-|nuORF	ENST00000515399.5_1_4:1235165-1243600:-|nuORF	ENST00000515399.5_1_4:1235165-1243600:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	419.2507019042969	2	419.268887	836.523222	0.24174	0.00010135	0.087897	3.6852E-05	0.32963	0.0001382	419.2688284681572	26.529	0.51258	26.506	26.328	26.841	-0.022236					20	17	2	0	0	0	0.34337	1	4404	4404		5.2307	0	1	47766			53724	11424	30742	30743	65786	65786					0.09842116205174989
VPPAPEVEFLY	11	Unmodified	_VPPAPEVEFLY_					0	0	0			REV__nc|ENSG00000185436|Q8IU57-2|IFNLR1	REV__nc|ENSG00000185436|Q8IU57-2|IFNLR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.8889465332031	3	420.88854	1259.64379	-0.28246	-0.00011888	0.62718	0.00026397	0.34472	0.00014509	420.88875659794456	14.026	0.48987	13.96	13.831	14.32	-0.066068					22	16	2	0	0	0	0.46059	1	615	615		1.3296	0	1	98916	+		53725	18380	30743	30744	65787	65787					0.0243543461747322
VPPCPDLFQ	9	Unmodified	_VPPCPDLFQ_					0	0	0		chr6:106971834-106977797|139|258.47|0.97|8.06|-|2|TE_info:AluSc8,AluSc8_dup7791,Alu,SINE,donor,+,106977797,106977958|CD24,None|1	chr6:106971834-106977797|139|258.47|0.97|8.06|-|2|TE_info:AluSc8,AluSc8_dup7791,Alu,SINE,donor,+,106977797,106977958|CD24,None|1	chr6:106971834-106977797|139|258.47|0.97|8.06|-|2|TE_info:AluSc8,AluSc8_dup7791,Alu,SINE,donor,+,106977797,106977958|CD24,None|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.66937255859375	2	508.249503	1014.48445	0.20447	0.00010392	1.0469	0.00053209	1.2514	0.00063602	508.74985516210984	18.166	0.21842	18.166	18.024	18.243	0					12	7	2	0	0	0	0.25417	1	1856	1856		8.5933	0	1	31231			53726	169	30744	30745	65788	65788					-0.022209772115161286
VPPDLDGR	8	Unmodified	_VPPDLDGR_					0	0	0			REV__ENST00000395094.3_1_16:30543822-30545758:-|nuORF	REV__ENST00000395094.3_1_16:30543822-30545758:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.88214111328125	2	434.729792	867.445031	-0.36255	-0.00015761	-0.50027	-0.00021748	-0.86282	-0.00037509	434.7295380446706	15.473	0.6425	15.473	15.012	15.654	0					30	21	2	0	0	0	0.34408	1	1080	1080		2.3027	0	1	27731	+		53727	17553	30745	30746	65789	65789					0.006006388292917109
VPPDMEDDY	9	Unmodified	_VPPDMEDDY_					0	0	0		ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8319702148438	2	540.713147	1079.41174	0.33877	0.00018318	2.1423	0.0011584	2.481	0.0013415	540.714177558586	69.308	0.57677	69.308	69.097	69.673	0					36	20	4	0	0	0	0.25291	1	17457	17457		5.2307	0.47466	1	247130			53728	573	30746	30747	65790	65790					-0.12478775795580077
VPPDMEDDY	9	Unmodified	_VPPDMEDDY_					0	0	0		ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	ENSG00000035403|ENST00000211998|VCL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.83203125	2	540.713147	1079.41174	0.46287	0.00025028	1.8523	0.0010016	2.3152	0.0012519	540.7140849303349	69.271	0.57049	69.337	69.066	69.637	0.066048					32	19	2	0	0	0	0.25291	1	17435	17435		9.3474	0	1	189720			53729	573	30746	30747	65791	65791					-0.12478775795580077
VPPDVISL	8	Unmodified	_VPPDVISL_					0	0	0		nc|ENSG00000108231|O95970-2|LGI1;nc|ENSG00000108231|O95970-3|LGI1;ENSG00000108231|ENST00000371418|LGI1	nc|ENSG00000108231|O95970-2|LGI1	nc|ENSG00000108231|O95970-2|LGI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.8889465332031	2	420.247286	838.48002	-0.263	-0.00011052	-3.2285	-0.0013568	-3.4915	-0.0014673	420.2457540709341	14.107	0.20868	14.041	13.889	14.098	-0.066067					10	6	2	0	0	0	0.34337	1	615	615		5.2307	0	1	42902			53730	2168	30747	30748	65792	65792					0.054318816372301626
VPPDVISL	8	Unmodified	_VPPDVISL_					0	0	0		nc|ENSG00000108231|O95970-2|LGI1;nc|ENSG00000108231|O95970-3|LGI1;ENSG00000108231|ENST00000371418|LGI1	nc|ENSG00000108231|O95970-2|LGI1	nc|ENSG00000108231|O95970-2|LGI1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	420.247286	838.48002	-0.36111	-0.00015175	-3.2344	-0.0013592	-3.5955	-0.001511	420.2458048464286	14.04	0.18353	14.04	13.902	14.086	0	-0.00044322	-1.1231E-06	NaN	5.2307	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43489			53731	2168	30747	30748							0.054318816372301626
VPPDWSLLVS	10	Unmodified	_VPPDWSLLVS_					0	0	0			REV__nc|ENSG00000139304|Q9UMZ3|PTPRQ	REV__nc|ENSG00000139304|Q9UMZ3|PTPRQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2679443359375	2	556.802957	1111.59136	0.39138	0.00021792	-0.6497	-0.00036176	-0.25833	-0.00014384	556.8027914908873	56.802	0.25453	56.88	56.756	57.011	0.078674					13	9	2	0	0	0	0.30586	1	13633	13633		19.257	2.1441	1	276420	+		53732	15980	30748	30749	65793	65793					0.040028962745282115
VPPEFWNKS	9	Unmodified	_VPPEFWNKS_					0	0	0		nc|ENSG00000159640|P12821-2|ACE;ENSG00000159640|ENST00000290866|ACE;ENST00000578839.5_1_17:61562212-61574724:+|nuORF;nc|ENSG00000159640|P12821-4|ACE;nc|ENSG00000159640|P12821-3|ACE;ENST00000579314.5_1_17:61565977-61574724:+|nuORF	nc|ENSG00000159640|P12821-2|ACE	nc|ENSG00000159640|P12821-2|ACE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2797241210938	2	552.279649	1102.54475	0.23523	0.00012991	-0.36171	-0.00019976	-0.12648	-6.9852E-05	552.2797065081882	23.912	0.69755	23.912	23.643	24.34	0					42	23	3	0	0	0	0.25431	1	3617	3617		9.3831	1.473	1	89326			53733	5418	30749	30750	65794	65794					-0.0024254355676021078
VPPETNCPL	9	Unmodified	_VPPETNCPL_					0	0	0		ENST00000264033.5_1_11:119149415-119156175:+|nuORF	ENST00000264033.5_1_11:119149415-119156175:+|nuORF	ENST00000264033.5_1_11:119149415-119156175:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.8164367675781	2	485.239135	968.463718	0.19116	9.2759E-05	0.94607	0.00045907	1.1372	0.00055183	485.2392370917985	26.737	0.39014	26.698	26.519	26.909	-0.038671					17	13	2	0	0	0	0.25879	1	4438	4438		4.756	0	1	40691			53734	9021	30750	30751	65795	65795					-0.02177567591161278
VPPEVFTRV	9	Unmodified	_VPPEVFTRV_					0	0	0		ENST00000552252.1_1_14:25042845-25044048:-|nuORF;ENSG00000100448|ENST00000216336|CTSG	ENST00000552252.1_1_14:25042845-25044048:-|nuORF	ENST00000552252.1_1_14:25042845-25044048:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.3225708007812	2	522.297842	1042.58113	0.80047	0.00041808	-0.31962	-0.00016694	0.48085	0.00025115	522.297793603103	48.099	0.47365	48.146	48.075	48.549	0.04752					26	17	2	0	0	0	0.23235	1	10963	10963		21.537	3.3906	1	246790			53735	1599	30751	30752	65796	65796					0.06154333339964069
VPPEVFTRV	9	Unmodified	_VPPEVFTRV_					0	0	0		ENST00000552252.1_1_14:25042845-25044048:-|nuORF;ENSG00000100448|ENST00000216336|CTSG	ENST00000552252.1_1_14:25042845-25044048:-|nuORF	ENST00000552252.1_1_14:25042845-25044048:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.297842	1042.58113	0.65548	0.00034236	-0.13011	-6.7957E-05	0.52537	0.0002744	522.2978617505047	48.21	0.52277	48.253	48.065	48.588	0.04332	0.053521	0.00012072	NaN	21.537	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272150			53736	1599	30751	30752							0.06154333339964069
VPPEVPSEEL	10	Unmodified	_VPPEVPSEEL_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.2450561523438	2	548.282054	1094.54956	0.45605	0.00025004	3.5432	0.0019427	3.9992	0.0021927	549.2853435905641	48.761	1.0536	48.793	48.387	49.441	0.032043					79	37	4	0	0	0	0.31165	1	11262	11262		15.847	1.0089	1	834690			53737	3333	30752	30753	65797	65797					0.006062957953417936
VPPEWVPII	9	Unmodified	_VPPEWVPII_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-5|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3052978515625	2	525.305136	1048.59572	0.70407	0.00036985	-0.53743	-0.00028231	0.16664	8.7539E-05	525.3048805396165	85.925	2.1732	85.925	85.484	87.657	0					213	88	5	0	0	0	0.062246	5	22599	22549;22599;22647;22784;22873		48.346	22.947	1	3147600			53738	8229	30753	30754	65798;65799;65800;65801;65802	65799					0.07336405488103992
VPPEWVPII	9	Unmodified	_VPPEWVPII_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-5|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3052978515625	2	525.305136	1048.59572	0.59057	0.00031023	-0.19911	-0.00010459	0.39145	0.00020563	525.304886547296	85.902	1.6017	85.986	85.514	87.116	0.084251					178	62	4	0	0	0	0.062246	4	22595	22496;22546;22595;22783		48.346	22.947	1	2591200			53739	8229	30753	30754	65803;65804;65805;65806	65805					0.07336405488103992
VPPEWVPII	9	Unmodified	_VPPEWVPII_					0	0	0		nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-5|BAG6	nc|ENSG00000204463|P46379-5|BAG6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.3052978515625	2	525.305136	1048.59572	0.69104	0.00036301	-0.27964	-0.0001469	0.4114	0.00021611	525.3048418506993	85.923	1.6674	85.914	85.407	87.075	-0.0090027					169	61	4	0	0	0	0.12846	3	22545	22496;22545;22589		34.102	8.7031	1	2408900			53740	8229	30753	30754	65807;65808;65809	65808					0.07336405488103992
VPPFLLELGS	10	Unmodified	_VPPFLLELGS_					0	0	0		ENSG00000132825|ENST00000370996|PPP1R3D	ENSG00000132825|ENST00000370996|PPP1R3D	ENSG00000132825|ENST00000370996|PPP1R3D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.3263549804688	2	536.307875	1070.6012	0.67196	0.00036038	-1.1841	-0.00063503	-0.51211	-0.00027465	536.3067795140101	86.191	1.3758	86.191	85.819	87.194	0					66	53	2	0	0	0	0.318	1	22588	22588		7.2892	0	1	156860			53741	3668	30754	30755	65810	65810					0.06872084279893897
VPPFTFHV	8	Unmodified	_VPPFTFHV_					0	0	0		nc|ENSG00000177469|Q6NZI2-3|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2555847167969	2	472.255446	942.496338	0.13948	6.5869E-05	0.040848	1.9291E-05	0.18032	8.5159E-05	472.2553587212797	62.451	1.5534	62.451	61.836	63.389	0					135	57	3	0	0	0	0.15515	2	15448	15402;15448		50.855	18.738	1	721260			53742	6989	30755	30756	65811;65812	65812					0.022790075940065435
VPPFTFHV	8	Unmodified	_VPPFTFHV_					0	0	0		nc|ENSG00000177469|Q6NZI2-3|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2552490234375	2	472.255446	942.496338	0.17065	8.0589E-05	-0.061552	-2.9068E-05	0.1091	5.1521E-05	472.25532628800534	62.272	1.6267	62.369	61.79	63.417	0.096985					121	59	3	0	0	0	0.13961	3	15360	15306;15360;15409		53.576	13.127	1	914140			53743	6989	30755	30756	65813;65814;65815	65814					0.022790075940065435
VPPFTFHV	8	Unmodified	_VPPFTFHV_					0	0	0		nc|ENSG00000177469|Q6NZI2-3|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.25567626953125	2	472.255446	942.496338	0.23601	0.00011146	-0.18443	-8.71E-05	0.051574	2.4356E-05	472.25530924976806	62.374	1.4793	62.366	61.846	63.325	-0.0085526					116	54	3	0	0	0	0.13961	3	15356	15356;15406;15454		53.576	21.459	1	705490			53744	6989	30755	30756	65816;65817;65818	65816					0.022790075940065435
VPPFVTFH	8	Unmodified	_VPPFVTFH_					0	0	0		ENSG00000174502|ENST00000367135|SLC26A9;nc|ENSG00000174502|Q7LBE3-2|SLC26A9	ENSG00000174502|ENST00000367135|SLC26A9	ENSG00000174502|ENST00000367135|SLC26A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.25543212890625	2	472.255446	942.496338	0.13948	6.5869E-05	0.040848	1.9291E-05	0.18032	8.5159E-05	472.2553587212797	62.451	1.5534	62.451	61.836	63.389	0					135	57	3	0	0	0	0.2157	1	15353	15353		40.449	2.2974	1	721260			53745	6800	30756	30757	65819	65819					0.02279007593995175
VPPFVTFH	8	Unmodified	_VPPFVTFH_					0	0	0		ENSG00000174502|ENST00000367135|SLC26A9;nc|ENSG00000174502|Q7LBE3-2|SLC26A9	ENSG00000174502|ENST00000367135|SLC26A9	ENSG00000174502|ENST00000367135|SLC26A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2550964355469	2	472.255446	942.496338	0.23601	0.00011146	-0.18443	-8.71E-05	0.051574	2.4356E-05	472.25530924976806	62.374	1.4793	62.366	61.846	63.325	-0.0085526					116	54	3	0	0	0	0.2157	1	15310	15310		40.449	2.2974	1	705490			53746	6800	30756	30757	65820	65820					0.02279007593995175
VPPGLTRPK	9	Unmodified	_VPPGLTRPK_					0	0	0			REV__ENSG00000270765|ENST00000604641|GAS2L2	REV__ENSG00000270765|ENST00000604641|GAS2L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.76617431640625	2	482.800552	963.58655	0.41945	0.00020251	-0.57012	-0.00027525	-0.15067	-7.2742E-05	482.8002169314941	40.507	0.32575	40.599	40.42	40.745	0.09267					17	11	2	0	0	0	0.22061	1	8670	8670		24.021	3.5669	1	93282	+		53747	19312	30757	30758	65821	65821					0.10330056922407493
VPPGPHWLL	9	Unmodified	_VPPGPHWLL_					0	0	0		ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	ENSG00000116032|ENST00000234389|GRIN3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8103942871094	2	508.28982	1014.56509	0.42879	0.00021795	0.14235	7.2356E-05	0.57114	0.0002903	508.2899540641106	63.93	0.36086	64.023	63.873	64.234	0.09288					17	12	2	0	0	0	0.22431	1	15884	15884		14.582	0.67564	1	185170			53748	2699	30758	30759	65822	65822					0.058386718937072146
VPPGPLPETV	10	Unmodified	_VPPGPLPETV_					0	0	0			REV__ENST00000360578.6_1_5:664230-664467:-|nuORF	REV__ENST00000360578.6_1_5:664230-664467:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.3265075683594	2	503.2844	1004.55425	0.39356	0.00019807	0.97599	0.0004912	1.3696	0.00068928	503.2849642864311	62.942	0.9094	63.038	62.602	63.511	0.095722					60	32	2	0	0	0	0.27042	1	15450	15450		28.487	5.7506	1	379830	+		53749	20261	30759	30760	65823	65823					0.05215224728760859
VPPHLAYF	8	Unmodified	_VPPHLAYF_					0	0	0		ENST00000420465.5_1_11:5326696-5367013:-|nuORF	ENST00000420465.5_1_11:5326696-5367013:-|nuORF	ENST00000420465.5_1_11:5326696-5367013:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2550354003906	2	472.255446	942.496338	0.13948	6.5869E-05	0.040848	1.9291E-05	0.18032	8.5159E-05	472.2553587212797	62.451	1.5534	62.451	61.836	63.389	0					135	57	3	0	0	0	0.28567	1	15299	15299		32.454	8.2437	1	721260			53750	10359	30760	30761	65824	65824					0.02279007593995175
VPPHLAYF	8	Unmodified	_VPPHLAYF_					0	0	0		ENST00000420465.5_1_11:5326696-5367013:-|nuORF	ENST00000420465.5_1_11:5326696-5367013:-|nuORF	ENST00000420465.5_1_11:5326696-5367013:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.25494384765625	2	472.255446	942.496338	0.17065	8.0589E-05	-0.061552	-2.9068E-05	0.1091	5.1521E-05	472.25532628800534	62.272	1.6267	62.369	61.79	63.417	0.096985					121	59	3	0	0	0	0.35781	1	15253	15253		24.21	3.3387	1	914140			53751	10359	30760	30761	65825	65825					0.02279007593995175
VPPILNALSTV	11	Unmodified	_VPPILNALSTV_					0	0	0			REV__ENSG00000163947|ENST00000296315|ARHGEF3	REV__ENSG00000163947|ENST00000296315|ARHGEF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.326171875	2	562.339707	1122.66486	-0.072804	-4.0941E-05	-0.015865	-8.9216E-06	-0.088669	-4.9862E-05	562.842138430061	12.484	0.30856	12.484	12.332	12.641	0					11	9	2	0	0	0	0.33352	1	182	182		0	0	1	17468	+		53752	17108	30761	30762	65826	65826					0.10843444716965678
VPPIRYHK	8	Unmodified	_VPPIRYHK_					0	0	0			REV__nc|ENSG00000102081|Q06787-11|FMR1	REV__nc|ENSG00000102081|Q06787-11|FMR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.5711364746094	2	505.300719	1008.58688	0.16274	8.2234E-05	-0.64627	-0.00032656	-0.48353	-0.00024433	505.3004068972605	25.996	0.56408	25.996	25.875	26.44	0					32	19	2	0	0	0	0.3366	1	4245	4245		18.135	6.4947	1	137170	+		53753	22917	30762	30763	65827	65827					0.0829347664226816
VPPIRYHK	8	Unmodified	_VPPIRYHK_					0	0	0			REV__nc|ENSG00000102081|Q06787-11|FMR1	REV__nc|ENSG00000102081|Q06787-11|FMR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.57110595703125	2	505.300719	1008.58688	0.10529	5.3201E-05	-0.98809	-0.00049928	-0.8828	-0.00044608	505.30026234391295	26.115	0.56845	26.076	25.721	26.29	-0.038671					28	19	2	0	0	0	0.3366	1	4254	4254		18.135	6.4947	1	131940	+		53754	22917	30762	30763	65828	65828					0.0829347664226816
VPPIRYHK	8	Unmodified	_VPPIRYHK_					0	0	0			REV__nc|ENSG00000102081|Q06787-11|FMR1	REV__nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	505.300719	1008.58688	0.25047	0.00012656	-0.75228	-0.00038013	-0.50181	-0.00025356	505.3003940247593	25.987	0.66539	25.965	25.691	26.356	-0.022236	-0.047297	2.0951E-05	NaN	18.135	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139160	+		53755	22917	30762	30763							0.0829347664226816
VPPKSLEI	8	Unmodified	_VPPKSLEI_					0	0	0		ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7680969238281	2	441.768386	881.522219	0.13905	6.1427E-05	-0.33966	-0.00015005	-0.20061	-8.8623E-05	441.7680933250697	41.518	1.7651	41.518	39.831	41.596	0					126	64	2	0	0	0	0.22	1	8757	8757		39.957	1.8061	1	1142000			53756	1201	30763	30764	65829	65829					0.07671857045602337
VPPKSLEI	8	Unmodified	_VPPKSLEI_					0	0	0		ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7682189941406	2	441.768386	881.522219	0.19483	8.6071E-05	-0.034574	-1.5274E-05	0.16026	7.0798E-05	441.76812286651284	41.099	1.8638	41.189	39.775	41.639	0.090252					179	68	4	0	0	0	0.11046	2	8779	8779;8830		58.679	3.9053	1	930600			53757	1201	30763	30764	65830;65831	65830					0.07671857045602337
VPPKSLEI	8	Unmodified	_VPPKSLEI_					0	0	0		ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7683410644531	2	441.768386	881.522219	0.17188	7.5933E-05	-0.20391	-9.008E-05	-0.032023	-1.4147E-05	441.7680909165782	41.297	1.8546	41.393	39.702	41.557	0.096622					166	67	3	0	0	0	0.25352	1	8838	8838		36.127	0.082828	1	1121500			53758	1201	30763	30764	65832	65832					0.07671857045602337
VPPKSSFYS	9	Unmodified	_VPPKSSFYS_					0	0	0		ENSG00000284526|ENST00000640006|unknown	ENSG00000284526|ENST00000640006|unknown	ENSG00000284526|ENST00000640006|unknown	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.5711364746094	2	506.260925	1010.5073	0.16399	8.3022E-05	-2.2136	-0.0011206	-2.0496	-0.0010376	506.2596041195779	26.129	0.26069	26.129	25.955	26.215	0					11	8	2	0	0	0	0.25879	1	4245	4245		4.756	0	1	40917			53759	8765	30764	30765	65833	65833					0.0024636517762246513
VPPKSVEV	8	Unmodified	_VPPKSVEV_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.7525634765625	2	427.752736	853.490919	-0.076595	-3.2764E-05	-0.2882	-0.00012328	-0.36479	-0.00015604	427.75245307788845	58.922	0.99669	58.922	58.564	59.56	0					76	34	3	0	0	0	0.37937	1	14396	14396		21.747	0	1	460290			53760	3688	30765	30766	65834	65834					0.0583128401152635
VPPKSVEV	8	Unmodified	_VPPKSVEV_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.7525329589844	2	427.752736	853.490919	0.067524	2.8884E-05	-0.54734	-0.00023413	-0.47982	-0.00020524	427.75238827195	58.907	0.96459	58.893	58.523	59.488	-0.014267					53	33	2	0	0	0	0.28696	1	14384	14384		32.305	3.8186	1	522980			53761	3688	30765	30766	65835	65835					0.0583128401152635
VPPKVNIL	8	Unmodified	_VPPKVNIL_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|261|1|anti-sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|261|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.75274658203125	2	440.286746	878.558939	0.22144	9.7496E-05	-0.40518	-0.00017839	-0.18374	-8.0898E-05	440.28649279487564	58.661	0.41861	58.661	58.413	58.832	0					18	13	2	0	0	0	0.34218	1	14203	14203		9.3474	0	1	119280	+		53762	22747	30766	30767	65836	65836					0.11480153662182602
VPPLATNTV	9	Unmodified	_VPPLATNTV_					0	0	0		nc|ENSG00000136715|Q9H0E3-2|SAP130;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.75067138671875	2	456.263468	910.512382	0.39001	0.00017795	-0.28852	-0.00013164	0.10148	4.6303E-05	456.2634781617763	47.385	0.80589	47.385	46.992	47.797	0					51	28	2	0	0	0	0.12563	1	10738	10738		47.749	23.728	1	718930			53763	3991	30767	30768	65837	65837					0.05354669040241333
VPPLATNTV	9	Unmodified	_VPPLATNTV_					0	0	0		nc|ENSG00000136715|Q9H0E3-2|SAP130;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2637939453125	2	456.263468	910.512382	0.24368	0.00011118	-0.066914	-3.053E-05	0.17677	8.0654E-05	456.2635776958696	47.372	0.83352	47.424	47.038	47.871	0.052574					71	30	3	0	0	0	0.11201	1	10854	10854		36.506	13.77	1	789410			53764	3991	30767	30768	65838	65838					0.05354669040241333
VPPLATNTV	9	Unmodified	_VPPLATNTV_					0	0	0		nc|ENSG00000136715|Q9H0E3-2|SAP130;nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3-2|SAP130	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.2637023925781	2	456.263468	910.512382	0.63068	0.00028776	-0.41468	-0.0001892	0.216	9.8553E-05	456.26338120776336	47.438	0.99581	47.481	46.961	47.957	0.04332					79	36	3	0	0	0	0.11201	1	10826	10826		36.506	12.486	1	657900			53765	3991	30767	30768	65839	65839					0.05354669040241333
VPPLPLRGV	9	Unmodified	_VPPLPLRGV_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.2908630371094	2	474.30547	946.596387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.529	1	73.583	73.083	74.083	0.053833								0	0	0	0.26258	1	18789	18789		2.3027	0	1		+		53766	15490	30768	30769	65840	65840					0.1209524492780929
VPPLSWLDLK	10	Unmodified	_VPPLSWLDLK_					0	0	0			REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3422241210938	2	584.342249	1166.66995	0.83208	0.00048622	-0.34254	-0.00020016	0.48955	0.00028606	584.3419740450416	56.214	0.83066	56.214	55.992	56.823	0					76	30	4	0	0	0	0.14021	1	13554	13554		39.95	1.9757	1	2674400	+		53767	15755	30769	30770	65841	65841					0.09327748579585204
VPPLSWLDLK	10	Unmodified	_VPPLSWLDLK_					0	0	0			REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3423461914062	2	584.342249	1166.66995	0.7979	0.00046624	-0.29502	-0.00017239	0.50287	0.00029385	584.34194850661	56.166	0.96857	56.24	55.962	56.93	0.074261					87	35	4	0	0	0	0.062954	1	13470	13470		56.177	10.477	1	3973600	+		53768	15755	30769	30770	65842	65842					0.09327748579585204
VPPLSWLDLK	10	Unmodified	_VPPLSWLDLK_					0	0	0			REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	REV__nc|ENSG00000135655|Q9Y4E8-2|USP15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.342529296875	2	584.342249	1166.66995	1.0007	0.00058477	-0.43492	-0.00025414	0.56581	0.00033063	584.3418689438123	56.515	1.0442	56.496	56.239	57.283	-0.019077					96	37	4	0	0	0	0.062954	2	13581	13581;13631		56.177	4.5472	1	4779600	+		53769	15755	30769	30770	65843;65844	65843					0.09327748579585204
VPPLVKVIF	9	Unmodified	_VPPLVKVIF_					0	0	0			REV__HCAR2|p.I182Cfs*89|1|0.07|ENSG00000182782|chr12:122702740-122702741|-/AATAACCGCA|frameshift_variant	REV__HCAR2|p.I182Cfs*89|1|0.07|ENSG00000182782|chr12:122702740-122702741|-/AATAACCGCA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2286376953125	2	506.333696	1010.65284	0.77099	0.00039038	0.10668	5.4018E-05	0.87768	0.0004444	506.33363026095907	77.944	0.64223	77.944	77.747	78.389	0					30	23	2	0	0	0	0.26117	1	20262	20262		2.3027	0	1	182620	+		53770	18217	30770	30771	65845	65845					0.14793872764471416
VPPPPHQAL	9	Unmodified	_VPPPPHQAL_					0	0	0		ENST00000540486.5_1_17:7833707-7833791:-|nuORF	ENST00000540486.5_1_17:7833707-7833791:-|nuORF	ENST00000540486.5_1_17:7833707-7833791:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2718200683594	2	478.271627	954.528701	0.26393	0.00012623	0.00044896	2.1472E-07	0.26438	0.00012645	478.2715776799785	41.006	1.1445	41.096	40.367	41.511	0.090248					123	42	4	0	0	0	0.1669	1	8761	8761		28.487	3.813	1	2514100			53771	11720	30771	30772	65846	65846					0.04961794996984281
VPPPSAQEI	9	Unmodified	_VPPPSAQEI_					0	0	0		nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF	nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.27679443359375	2	469.2531	936.491647	0.26964	0.00012653	0.67482	0.00031666	0.94446	0.00044319	469.25325657570284	40.479	0.91033	40.572	40.254	41.165	0.09267					66	33	3	0	0	0	0.14961	1	8622	8622		41.84	16.44	1	383490			53772	666	30772	30773	65847	65847					0.0208607866057946
VPPPSAQEI	9	Unmodified	_VPPPSAQEI_					0	0	0		nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF	nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.27685546875	2	469.2531	936.491647	0.27433	0.00012873	0.44491	0.00020877	0.71924	0.0003375	469.25328491620877	40.511	0.89436	40.611	40.201	41.095	0.099407					53	32	2	0	0	0	0.13643	1	8596	8596		38.176	7.539	1	415690			53773	666	30772	30773	65848	65848					0.0208607866057946
VPPQLQFDDLS	11	Unmodified	_VPPQLQFDDLS_					0	0	0			REV__ENSG00000107833|ENST00000370110|NPM3	REV__ENSG00000107833|ENST00000370110|NPM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.5903625488281	3	420.215316	1257.62412	0.10703	4.4977E-05	-0.54806	-0.00023031	-0.44103	-0.00018533	420.21564141324234	27.003	0.49831	26.992	26.741	27.239	-0.011562					25	17	2	0	0	0	0.33202	1	4457	4457		2.8433	0	1	63543	+		53774	14566	30773	30774	65849	65849					0.0056105860674051655
VPPQMMFPP	9	Unmodified	_VPPQMMFPP_					0	0	0		ENSG00000183486|ENST00000330714|MX2;nc|ENSG00000183486|P20592-2|MX2	ENSG00000183486|ENST00000330714|MX2	ENSG00000183486|ENST00000330714|MX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.7876586914062	2	522.256274	1042.49799	0.33117	0.00017295	0.11032	5.7614E-05	0.44149	0.00023057	522.7586387240312	23.791	0.14865	23.718	23.672	23.821	-0.072559					7	4	2	0	0	0	0.26117	1	3570	3570		2.3027	0	1	33160			53775	7370	30774	30775	65850	65850					-0.021554427039291113
VPPQTDVLL	9	Unmodified	_VPPQTDVLL_					0	0	0		ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	ENSG00000182858|ENST00000330817|ALG12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.298828125	2	491.2844	980.554247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.15	1	104.15	103.65	104.65	0								0	0	0	0.25631	1	27657	27657		4.3292	0	1				53776	7325	30775	30776	65851	65851					0.06319224728747486
VPPRRGQL	8	Unmodified	_VPPRRGQL_					0	0	0			REV__ENSG00000164742|ENST00000297323|ADCY1	REV__ENSG00000164742|ENST00000297323|ADCY1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.7897033691406	2	461.782693	921.550834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.465	1	42.465	41.965	42.965	0								0	0	0	0.12828	1	9245	9245		56.541	16.093	1		+		53777	17177	30776	30777	65852	65852					0.08692019465422618
VPPRVSITI	9	Unmodified	_VPPRVSITI_					0	0	0		nc|ENSG00000167984|Q7RTR2-3|NLRC3;nc|ENSG00000167984|Q7RTR2-4|NLRC3;ENSG00000167984|ENST00000359128|NLRC3;nc|ENSG00000167984|Q7RTR2-2|NLRC3	nc|ENSG00000167984|Q7RTR2-3|NLRC3	nc|ENSG00000167984|Q7RTR2-3|NLRC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.3086242675781	2	491.30821	980.601866	0.6768	0.00033252	-0.33421	-0.0001642	0.34258	0.00016831	491.30804458427343	50.784	1.1594	50.831	50.344	51.504	0.046574					83	42	3	0	0	0	0.074552	1	11825	11825		43.772	9.3707	1	373620			53778	6228	30777	30778	65853	65853					0.11078923719617251
VPPRVSITI	9	Unmodified	_VPPRVSITI_					0	0	0		nc|ENSG00000167984|Q7RTR2-3|NLRC3;nc|ENSG00000167984|Q7RTR2-4|NLRC3;ENSG00000167984|ENST00000359128|NLRC3;nc|ENSG00000167984|Q7RTR2-2|NLRC3	nc|ENSG00000167984|Q7RTR2-3|NLRC3	nc|ENSG00000167984|Q7RTR2-3|NLRC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.30841064453125	2	491.30821	980.601866	0.74407	0.00036557	-0.33565	-0.00016491	0.40842	0.00020066	491.30798557887954	50.677	1.1042	50.698	50.335	51.439	0.020691					73	41	2	0	0	0	0.11201	1	11850	11850		36.506	5.8697	1	512220			53779	6228	30777	30778	65854	65854					0.11078923719617251
VPPSLQRR	8	Unmodified	_VPPSLQRR_					0	0	0			REV__ENST00000554950.1_1_14:100820206-100820242:-|nuORF	REV__ENST00000554950.1_1_14:100820206-100820242:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.2486267089844	2	476.787976	951.561398	-0.098679	-4.7049E-05	1.3414	0.00063956	1.2427	0.00059251	476.78795690193937	13.392	0.56582	13.293	12.953	13.519	-0.09929					43	19	4	0	0	0	0.34437	1	312	312		0.69038	0	1	89240	+		53780	22241	30778	30779	65855	65855					0.08368002119846096
VPPSPANFI	9	Unmodified	_VPPSPANFI_					0	0	0		ENSG00000100121|ENST00000448514|GGTLC2;nc|ENSG00000100031|P19440-3|GGT1;ENSG00000149435|ENST00000335694|GGTLC1;ENSG00000100031|ENST00000400382|GGT1;ENST00000490087.1_1_22:25023855-25024219:+|nuORF	ENSG00000100121|ENST00000448514|GGTLC2	ENSG00000100121|ENST00000448514|GGTLC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.80487060546875	2	471.258185	940.501818	0.13417	6.3227E-05	0.14723	6.9385E-05	0.2814	0.00013261	471.2581009366235	64.789	1.3078	64.789	64.238	65.545	0					79	47	3	0	0	0	0.13898	1	16106	16106		43.858	20.71	1	324390			53781	1521	30779	30780	65856	65856					0.029186863857944445
VPPSPANFI	9	Unmodified	_VPPSPANFI_					0	0	0		ENSG00000100121|ENST00000448514|GGTLC2;nc|ENSG00000100031|P19440-3|GGT1;ENSG00000149435|ENST00000335694|GGTLC1;ENSG00000100031|ENST00000400382|GGT1;ENST00000490087.1_1_22:25023855-25024219:+|nuORF	ENSG00000100121|ENST00000448514|GGTLC2	ENSG00000100121|ENST00000448514|GGTLC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.80487060546875	2	471.258185	940.501818	0.20334	9.5828E-05	0.0015365	7.2411E-07	0.20488	9.6552E-05	471.2580647443012	64.685	1.2458	64.778	64.334	65.58	0.09288					70	45	2	0	0	0	0.12743	1	16076	16076		46.021	21.347	1	336480			53782	1521	30779	30780	65857	65857					0.029186863857944445
VPPSPANFI	9	Unmodified	_VPPSPANFI_					0	0	0		ENSG00000100121|ENST00000448514|GGTLC2;nc|ENSG00000100031|P19440-3|GGT1;ENSG00000149435|ENST00000335694|GGTLC1;ENSG00000100031|ENST00000400382|GGT1;ENST00000490087.1_1_22:25023855-25024219:+|nuORF	ENSG00000100121|ENST00000448514|GGTLC2	ENSG00000100121|ENST00000448514|GGTLC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.8049011230469	2	471.258185	940.501818	0.20242	9.5391E-05	0.085695	4.0384E-05	0.28811	0.00013578	471.2581307535745	64.765	0.98187	64.756	64.339	65.321	-0.0095367					60	35	2	0	0	0	0.1939	1	16152	16152		30.637	11.198	1	315430			53783	1521	30779	30780	65858	65858					0.029186863857944445
VPPTTFSLTF	10	Unmodified	_VPPTTFSLTF_					0	0	0		nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	nc|ENSG00000117523|Q9Y520-3|PRRC2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7588500976562	2	555.297507	1108.58046	0.42062	0.00023357	-3.5552	-0.0019742	-3.1346	-0.0017406	555.7962261200303	56.649	0.51453	56.649	56.471	56.986	0					36	18	3	0	0	0	0.29519	1	13721	13721		15.847	5.0233	1	304860			53784	12673	30780	30781	65859	65859					0.03051493900238711
VPPVATPK	8	Unmodified	_VPPVATPK_					0	0	0			REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.23834228515625	2	404.749996	807.485439	-0.11755	-4.758E-05	-0.11926	-4.8271E-05	-0.23681	-9.585E-05	404.7499358399346	21.62	0.46004	21.571	21.344	21.804	-0.049377					22	15	2	0	0	0	0.34247	1	2833	2833		8.5933	0	1	62443	+		53785	17570	30781	30782	65860	65860					0.07399605219700334
VPPVTSIGI	9	Unmodified	_VPPVTSIGI_					0	0	0		nc|ENSG00000110660|Q8IXU6-3|SLC35F2;ENSG00000110660|ENST00000525815|SLC35F2	nc|ENSG00000110660|Q8IXU6-3|SLC35F2	nc|ENSG00000110660|Q8IXU6-3|SLC35F2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7679443359375	2	441.768386	881.522219	0.13905	6.1427E-05	-0.33966	-0.00015005	-0.20061	-8.8623E-05	441.7680933250697	41.518	1.7651	41.518	39.831	41.596	0					126	64	2	0	0	0	0.072844	1	8710	8710		44.407	0	1	1142000			53786	2320	30782	30783	65861	65861					0.07671857045602337
VPPVTSIGI	9	Unmodified	_VPPVTSIGI_					0	0	0		nc|ENSG00000110660|Q8IXU6-3|SLC35F2;ENSG00000110660|ENST00000525815|SLC35F2	nc|ENSG00000110660|Q8IXU6-3|SLC35F2	nc|ENSG00000110660|Q8IXU6-3|SLC35F2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7685241699219	2	441.768386	881.522219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.264	1	42.264	41.764	42.764	0								0	0	0	0.19804	1	9182	9182		23.148	1.4018	1				53787	2320	30782	30783	65862	65862					0.07671857045602337
VPPWKAPM	8	Unmodified	_VPPWKAPM_					0	0	0		ENST00000448587.5_2_19:5560846-5561215:-|nuORF	ENST00000448587.5_2_19:5560846-5561215:-|nuORF	ENST00000448587.5_2_19:5560846-5561215:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.78717041015625	2	463.251849	924.489145	0.66594	0.0003085	0.54482	0.00025239	1.2108	0.00056088	463.2532893158685	77.689	0.79845	77.658	77.262	78.061	-0.031334					37	28	2	0	0	0	0.34185	1	20007	20007		5.7604	0	1	60692			53788	10621	30783	30784	65863	65863					0.023879517219143054
VPQALEPL	8	Unmodified	_VPQALEPL_					0	0	0		ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.75250244140625	2	433.752736	865.490919	-0.0068464	-2.9696E-06	-0.20517	-8.8992E-05	-0.21201	-9.1962E-05	433.7525623641526	65.564	0.91543	65.552	65.201	66.117	-0.011337					56	32	3	0	0	0	0.32038	1	16374	16374		28.487	7.6156	1	434230			53789	1966	30784	30785	65864	65864					0.05279284011510299
VPQALVHL	8	Unmodified	_VPQALVHL_					0	0	0		ENSG00000166368|ENST00000299459|OR2D2	ENSG00000166368|ENST00000299459|OR2D2	ENSG00000166368|ENST00000299459|OR2D2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.24749755859375	2	438.76872	875.522887	0.10832	4.7527E-05	-0.83792	-0.00036766	-0.72961	-0.00032013	438.76819100015837	20.327	0.41513	20.327	20.235	20.65	0					17	14	2	0	0	0	0.34319	1	2540	2540		2.5775	0	1	40489			53790	6069	30785	30786	65865	65865					0.08014696485315653
VPQAQSGIW	9	Unmodified	_VPQAQSGIW_					0	0	0		ENST00000504032.1_1_4:39529823-39533660:+|nuORF	ENST00000504032.1_1_4:39529823-39533660:+|nuORF	ENST00000504032.1_1_4:39529823-39533660:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.8105773925781	2	493.258717	984.50288	0.49941	0.00024634	-1.1865	-0.00058526	-0.68712	-0.00033893	493.2583603794123	42.086	0.13463	42.177	42.095	42.23	0.091362					6	4	2	0	0	0	0.24739	1	9127	9127		13.508	0	1	71297			53791	11296	30786	30787	65866	65866					0.010009007547182591
VPQARLAL	8	Unmodified	_VPQARLAL_					0	0	0		ENST00000605833.1_1_10:17258201-17271901:-|nuORF	ENST00000605833.1_1_10:17258201-17271901:-|nuORF	ENST00000605833.1_1_10:17258201-17271901:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.2742614746094	2	434.27417	866.533787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.004	1	40.004	39.504	40.504	0								0	0	0	0.32762	1	8492	8492		24.674	2.9272	1				53792	12291	30787	30788	65867	65867					0.09518098859598467
VPQGIRPVV	9	Unmodified	_VPQGIRPVV_					0	0	0		nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.76611328125	2	482.800552	963.58655	0.3763	0.00018168	-0.49093	-0.00023702	-0.11463	-5.5345E-05	482.80021631304436	40.417	0.353	40.517	40.397	40.75	0.099407					16	12	2	0	0	0	0.20651	1	8652	8652		20.454	4.6064	1	144350			53793	4119	30788	30789	65868	65868					0.10330056922418862
VPQGMRISL	9	Oxidation (M)	_VPQGM(Oxidation (M))RISL_		VPQGM(1)RISL		VPQGM(60)RISL	0	0	1		ENSG00000155659|ENST00000374737|VSIG4;nc|ENSG00000155659|Q9Y279-2|VSIG4	ENSG00000155659|ENST00000374737|VSIG4	ENSG00000155659|ENST00000374737|VSIG4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7819519042969	2	508.781502	1015.54845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.597	1	37.597	37.097	38.097	0								0	0	0	0.052743	1	7758	7758		60.074	18.118	1				53794	5187	30789	30790	65869	65869		632			0.04129802945465144
VPQGVSLKV	9	Unmodified	_VPQGVSLKV_					0	0	0		ENST00000472414.1_1_1:6698189-6705162:-|nuORF;nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11	ENST00000472414.1_1_1:6698189-6705162:-|nuORF	ENST00000472414.1_1_1:6698189-6705162:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.80096435546875	2	463.78711	925.559667	0.10466	4.8538E-05	0.3142	0.00014572	0.41886	0.00019426	463.7873356184067	36.027	0.5097	36.027	35.773	36.282	0					28	18	2	0	0	0	0.18208	1	7275	7275		26.268	3.1197	1	406120			53795	385	30790	30791	65870	65870					0.09390948311227021
VPQGVSLKV	9	Unmodified	_VPQGVSLKV_					0	0	0		ENST00000472414.1_1_1:6698189-6705162:-|nuORF;nc|ENSG00000007923|Q9NVH1-3|DNAJC11;nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11	ENST00000472414.1_1_1:6698189-6705162:-|nuORF	ENST00000472414.1_1_1:6698189-6705162:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.80084228515625	2	463.78711	925.559667	0.36219	0.00016798	-0.24098	-0.00011176	0.12121	5.6214E-05	463.78709599598807	35.912	0.60829	35.998	35.762	36.371	0.08625					30	21	2	0	0	0	0.14786	1	7233	7233		31.268	8.1199	1	414800			53796	385	30790	30791	65871	65871					0.09390948311227021
VPQHPSCLF	9	Unmodified	_VPQHPSCLF_					0	0	0		ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2554931640625	2	514.25512	1026.49569	0.16822	8.6509E-05	0.34414	0.00017698	0.51236	0.00026349	514.2553658245954	82.052	1.7411	82.121	81.874	83.615	0.068993					245	69	7	0	0	0	0.30623	1	21409	21409		7.9102	0.62092	1	9050000			53797	2888	30791	30792	65872	65872					-0.016501551173860207
VPQIGQSL	8	Unmodified	_VPQIGQSL_					0	0	0			REV__ENSG00000213983|ENST00000397120|AP1G2	REV__ENSG00000213983|ENST00000397120|AP1G2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.75128173828125	2	421.242535	840.470518	0.0589	2.4811E-05	-0.15232	-6.4163E-05	-0.093419	-3.9352E-05	421.2432183741161	66.34	0.26357	66.326	66.222	66.485	-0.013588					11	9	2	0	0	0	0.45431	1	16590	16590		4.3292	0.38484	1	35364	+		53798	19051	30792	30793	65873	65873					0.04390113351723812
VPQLRVSI	8	Unmodified	_VPQLRVSI_					0	0	0			REV__ENSG00000170921|ENST00000689528|TANC2	REV__ENSG00000170921|ENST00000689528|TANC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2768249511719	2	456.287277	910.560001	0.26747	0.00012204	-0.16999	-7.7566E-05	0.097476	4.4477E-05	456.28710254897953	42.087	0.79676	42.172	41.959	42.755	0.085201					53	28	3	0	0	0	0.38703	1	9166	9166		20.871	1.4322	1	1569300	+		53799	17607	30793	30794	65874	65874					0.10114368031076992
VPQPMPSI	8	Oxidation (M)	_VPQPM(Oxidation (M))PSI_		VPQPM(1)PSI		VPQPM(51)PSI	0	0	1		nc|ENSG00000290571|Q9HBQ8-2|GOLGA2P5;nc|ENSG00000290571|Q9HBQ8|GOLGA2P5;nc|ENSG00000167110|Q08379-2|GOLGA2;nc|ENSG00000167110|Q08379|GOLGA2;GOLGA2|p.A991Lfs*7|1|0.2|ENSG00000167110|chr9:128257105-128257105|C/-|frameshift_variant;ENSG00000167110|ENST00000611957|GOLGA2	nc|ENSG00000290571|Q9HBQ8-2|GOLGA2P5	nc|ENSG00000290571|Q9HBQ8-2|GOLGA2P5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.28399658203125	2	442.730946	883.447339	0.10132	4.4859E-05	-0.053943	-2.3882E-05	0.047382	2.0977E-05	442.73088741373715	42.737	0.74512	42.737	42.435	43.18	0					48	26	2	0	0	0	0.13693	1	9368	9368		50.855	10.406	1	272700			53800	6149	30794	30795	65875	65875		719			0.000953512427372516
VPQPPPRTI	9	Unmodified	_VPQPPPRTI_					0	0	0		nc|ENSG00000171813|Q6NUJ5-2|PWWP2B;ENSG00000171813|ENST00000305233|PWWP2B	nc|ENSG00000171813|Q6NUJ5-2|PWWP2B	nc|ENSG00000171813|Q6NUJ5-2|PWWP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7986145019531	2	502.798009	1003.58147	0.35383	0.0001779	-0.22675	-0.00011401	0.12707	6.3892E-05	502.7978189050752	34.176	1.4395	34.176	33.336	34.775	0					95	51	3	0	0	0	0.19083	1	6676	6676		24.991	8.0487	1	352740			53801	6579	30795	30796	65876	65876					0.07981753059812036
VPQPPPRTI	9	Unmodified	_VPQPPPRTI_					0	0	0		nc|ENSG00000171813|Q6NUJ5-2|PWWP2B;ENSG00000171813|ENST00000305233|PWWP2B	nc|ENSG00000171813|Q6NUJ5-2|PWWP2B	nc|ENSG00000171813|Q6NUJ5-2|PWWP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7985534667969	2	502.798009	1003.58147	0.51357	0.00025822	-0.33099	-0.00016642	0.18258	9.1799E-05	502.79774645242594	33.987	1.2713	34.053	33.432	34.704	0.06636					90	45	3	0	0	0	0.12279	2	6612	6612;6741		34.932	13.185	1	337910			53802	6579	30795	30796	65877;65878	65877					0.07981753059812036
VPQPPPRTI	9	Unmodified	_VPQPPPRTI_					0	0	0		nc|ENSG00000171813|Q6NUJ5-2|PWWP2B;ENSG00000171813|ENST00000305233|PWWP2B	nc|ENSG00000171813|Q6NUJ5-2|PWWP2B	nc|ENSG00000171813|Q6NUJ5-2|PWWP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.7974853515625	2	502.798009	1003.58147	0.1506	7.5723E-05	-0.064381	-3.2371E-05	0.086222	4.3352E-05	502.79786037396565	34.006	1.5604	34.073	33.158	34.718	0.066704					103	55	3	0	0	0	0.09758	3	6705	6606;6705;6775		38.615	8.1199	1	409960			53803	6579	30795	30796	65879;65880;65881	65880					0.07981753059812036
VPQPSGRTL	9	Unmodified	_VPQPSGRTL_					0	0	0		nc|ENSG00000131196|O95644-17|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1	nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-17|NFATC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.771728515625	2	477.771991	953.529429	-0.099906	-4.7732E-05	0.070574	3.3718E-05	-0.029332	-1.4014E-05	477.77201105340833	28.366	0.66191	28.366	28.008	28.67	0					60	22	4	0	0	0	0.11201	1	4964	4964		36.506	4.2007	1	458860			53804	3550	30796	30797	65882	65882					0.05080589646047429
VPQPSGRTL	9	Unmodified	_VPQPSGRTL_					0	0	0		nc|ENSG00000131196|O95644-17|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1	nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-17|NFATC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.77178955078125	2	477.771991	953.529429	0.033966	1.6228E-05	0.018098	8.6467E-06	0.052064	2.4875E-05	477.7719668587198	28.325	0.60541	28.321	27.994	28.599	-0.0042572					54	21	3	0	0	0	0.05341	2	4920	4920;4966		51.63	5.9302	1	540620			53805	3550	30796	30797	65883;65884	65883					0.05080589646047429
VPQPSGRTL	9	Unmodified	_VPQPSGRTL_					0	0	0		nc|ENSG00000131196|O95644-17|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1	nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-17|NFATC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.77197265625	2	477.771991	953.529429	-0.053159	-2.5398E-05	0.0097883	4.6766E-06	-0.043371	-2.0721E-05	477.7720201527659	28.334	0.78216	28.334	27.963	28.745	0.0004673					67	27	4	0	0	0	0.15763	1	4908	4908		29.841	2.9569	1	455780			53806	3550	30796	30797	65885	65885					0.05080589646047429
VPQPSGTRL	9	Unmodified	_VPQPSGTRL_					0	0	0			REV__ENST00000579585.5_1_17:61771267-61771504:+|nuORF	REV__ENST00000579585.5_1_17:61771267-61771504:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7720031738281	2	477.771991	953.529429	-0.053159	-2.5398E-05	0.0097883	4.6766E-06	-0.043371	-2.0721E-05	477.7720201527659	28.334	0.78216	28.334	27.963	28.745	0.0004673					67	27	4	0	0	0	0.10059	1	4960	4960		38.176	0	1	455780	+		53807	22477	30797	30798	65886	65886					0.05080589646047429
VPQRPSIVPVL	11	Unmodified	_VPQRPSIVPVL_					0	0	0			REV__ENST00000552338.5_1_12:50571813-50589811:-|nuORF	REV__ENST00000552338.5_1_12:50571813-50589811:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.8743896484375	2	602.874248	1203.73394	0.60487	0.00036466	-0.40139	-0.00024199	0.20347	0.00012267	602.8739330260187	57.34	0.73779	57.34	57.09	57.828	0					67	26	4	0	0	0	0.14098	2	13831	13831;13876		36.506	10.479	1	2594000	+		53808	22218	30798	30799	65887;65888	65887					0.140225287365638
VPQRPSIVPVL	11	Unmodified	_VPQRPSIVPVL_					0	0	0			REV__ENST00000552338.5_1_12:50571813-50589811:-|nuORF	REV__ENST00000552338.5_1_12:50571813-50589811:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8744506835938	2	602.874248	1203.73394	0.52648	0.0003174	-0.44033	-0.00026547	0.086145	5.1934E-05	602.8739298363048	57.229	0.74077	57.307	57.04	57.781	0.078674					73	26	4	0	0	0	0.14098	2	13793	13793;13839		36.506	11.515	1	2681500	+		53809	22218	30798	30799	65889;65890	65889					0.140225287365638
VPQRPSIVPVL	11	Unmodified	_VPQRPSIVPVL_					0	0	0			REV__ENST00000552338.5_1_12:50571813-50589811:-|nuORF	REV__ENST00000552338.5_1_12:50571813-50589811:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	602.874248	1203.73394	0.60487	0.00036466	-0.40139	-0.00024199	0.20347	0.00012267	602.8739330260187	57.34	0.73779	57.34	57.09	57.828	0	0.016584	1.9363E-05	NaN	36.506	67	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2594000	+		53810	22218	30798	30799							0.140225287365638
VPQRPSIVPVL	11	Unmodified	_VPQRPSIVPVL_					0	0	0			REV__ENST00000552338.5_1_12:50571813-50589811:-|nuORF	REV__ENST00000552338.5_1_12:50571813-50589811:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	602.874248	1203.73394	0.52648	0.0003174	-0.44033	-0.00026547	0.086145	5.1934E-05	602.8739298363048	57.229	0.74077	57.307	57.04	57.781	0.078674	-0.016584	-2.7589E-05	NaN	36.506	73	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2681500	+		53811	22218	30798	30799							0.140225287365638
VPQRPWAAV	9	Unmodified	_VPQRPWAAV_					0	0	0		ENST00000327535.5_1_1:24482054-24482345:-|nuORF	ENST00000327535.5_1_1:24482054-24482345:-|nuORF	ENST00000327535.5_1_1:24482054-24482345:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.7889099121094	2	512.290351	1022.56615	0.19403	9.9401E-05	-0.92011	-0.00047136	-0.72608	-0.00037196	512.2899318204011	53.797	0.57241	53.853	53.509	54.081	0.056255					34	21	2	0	0	0	0.23783	1	12713	12713		18.135	3.2967	1	287170			53812	9424	30799	30800	65891	65891					0.05576886262599601
VPQTLCRRE	9	Unmodified	_VPQTLCRRE_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.29541015625	2	551.295307	1100.57606	0.31132	0.00017163	0.14403	7.9401E-05	0.45534	0.00025103	551.2954081712238	16.783	0.63047	16.783	16.491	17.122	0					47	21	3	0	0	0	0.33508	1	1394	1394		3.5965	0	1	230270	+		53813	19302	30800	30801	65892	65892					0.029797062056786672
VPQTLCRRE	9	Unmodified	_VPQTLCRRE_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2955932617188	2	551.295307	1100.57606	0.22011	0.00012135	0.26741	0.00014742	0.48752	0.00026877	551.2954406340758	16.931	0.67279	16.817	16.532	17.204	-0.11434					72	24	4	0	0	0	0.33508	1	1480	1480		3.5965	3.5965	1	209310	+		53814	19302	30800	30801	65893	65893					0.029797062056786672
VPQTRVQK	8	Unmodified	_VPQTRVQK_					0	0	0			REV__ENSG00000011114|ENST00000334746|BTBD7	REV__ENSG00000011114|ENST00000334746|BTBD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.78460693359375	2	478.287808	954.561064	0.055899	2.6736E-05	-2.1241	-0.0010159	-2.0682	-0.00098919	478.2868768669068	41.452	0.98547	41.452	41.01	41.996	0					74	40	3	0	0	0	0.3366	1	8870	8870		12.532	4.6214	1	2391100	+		53815	13425	30801	30802	65894	65894					0.08196582399989438
VPQVLLPF	8	Unmodified	_VPQVLLPF_					0	0	0		NUP210L|p.V790Cfs*8|1|0.05|ENSG00000143552|chr1:154070460-154070461|-/TATGTATACAT|frameshift_variant;nc|ENSG00000143552|Q5VU65-2|NUP210L;ENSG00000143552|ENST00000368559|NUP210L	NUP210L|p.V790Cfs*8|1|0.05|ENSG00000143552|chr1:154070460-154070461|-/TATGTATACAT|frameshift_variant	NUP210L|p.V790Cfs*8|1|0.05|ENSG00000143552|chr1:154070460-154070461|-/TATGTATACAT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7930603027344	2	456.781296	911.54804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.523	1	35.523	35.023	36.023	0								0	0	0	0.16655	1	7122	7122		49.669	5.8965	1				53816	4529	30802	30803	65895	65895					0.08872751287901792
VPRAILVDL	9	Unmodified	_VPRAILVDL_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;TUBB|p.M233Cfs*14|1|0.3|ENSG00000196230|chr6:30723759-30723766|ATGAGTGG/-|frameshift_variant;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.316162109375	2	498.316035	994.617516	0.29331	0.00014616	-0.73224	-0.00036489	-0.43893	-0.00021872	498.3159930448242	60.339	0.874	60.339	59.977	60.851	0					114	31	5	0	0	0	0.017549	2	14754	14706;14754		67.838	12.335	1	3565400			53817	7841;8646	30803	30804	65896;65897	65897					0.11999210236660929
VPRAILVDL	9	Unmodified	_VPRAILVDL_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;TUBB|p.M233Cfs*14|1|0.3|ENSG00000196230|chr6:30723759-30723766|ATGAGTGG/-|frameshift_variant;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.31597900390625	2	498.316035	994.617516	0.00060805	3.03E-07	-0.22944	-0.00011433	-0.22883	-0.00011403	498.3160707243773	60.22	0.93295	60.315	59.961	60.894	0.095093					100	33	4	0	0	0	0.017549	1	14697	14697		67.838	12.335	1	3723500			53818	7841;8646	30803	30804	65898	65898					0.11999210236660929
VPRAILVDL	9	Unmodified	_VPRAILVDL_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;TUBB|p.M233Cfs*14|1|0.3|ENSG00000196230|chr6:30723759-30723766|ATGAGTGG/-|frameshift_variant;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.316162109375	2	498.316035	994.617516	0.33898	0.00016892	-0.90676	-0.00045185	-0.56778	-0.00028293	498.31593426227454	60.326	0.8926	60.314	59.968	60.86	-0.011486					115	32	4	0	0	0	0.017549	2	14734	14684;14734		67.838	12.335	1	3363100			53819	7841;8646	30803	30804	65899;65900	65900					0.11999210236660929
VPRAKIHSL	9	Unmodified	_VPRAKIHSL_					0	0	0		ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.27520751953125	2	510.819276	1019.624	0.51288	0.00026199	-0.26399	-0.00013485	0.24889	0.00012714	510.8191687029182	20.551	0.3895	20.441	20.277	20.666	-0.11003					20	13	2	0	0	0	0.24848	1	2572	2572		13.906	0	1	77221			53820	6920	30804	30805	65901	65901					0.11497148188038864
VPRAPSISPST	11	Unmodified	_VPRAPSISPST_					0	0	0		nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;LRP8|p.L926Pfs*37|1|0.1|ENSG00000157193|chr1:53249457-53249458|-/AGAAGAAAAATGG|frameshift_variant;ENSG00000157193|ENST00000306052|LRP8	nc|ENSG00000157193|Q14114-4|LRP8	nc|ENSG00000157193|Q14114-4|LRP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3082275390625	2	556.308938	1110.60332	0.1632	9.0789E-05	-0.93979	-0.00052281	-0.77659	-0.00043202	556.3082798674587	80.361	2.4792	80.426	79.622	82.101	0.065094					209	106	2	0	0	0	0.42346	1	20710	20710		8.1555	2.8586	1	805360			53821	5288	30805	30806	65902	65902					0.0524451301771478
VPRAQPKL	8	Unmodified	_VPRAQPKL_					0	0	0			REV__ENST00000473770.5_1_22:32017296-32019834:-|nuORF	REV__ENST00000473770.5_1_22:32017296-32019834:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2520446777344	2	454.787444	907.560336	-0.019547	-8.8899E-06	-1.3287	-0.00060429	-1.3483	-0.00061318	454.78673925109564	23.169	0.38768	23.081	22.883	23.27	-0.08761					18	13	2	0	0	0	0.3439	1	3312	3312		2.8892	0	1	39815	+		53822	21384	30806	30807	65903	65903					0.1028578775093365
VPRARLQPGSP	11	Unmodified	_VPRARLQPGSP_					0	0	0		nc|ENSG00000168060|Q9UQQ1-6|NAALADL1	nc|ENSG00000168060|Q9UQQ1-6|NAALADL1	nc|ENSG00000168060|Q9UQQ1-6|NAALADL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3419189453125	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.57	1	113.57	113.07	114.07	0								0	0	0	0.38137	1	29495	29495		1.0715	0.5467	1				53823	12826	30807	30808	65904	65904					0.09147016757128767
VPRASVPDGFL	11	Unmodified	_VPRASVPDGFL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.2725830078125	2	579.319306	1156.62406	0.79918	0.00046298	-0.44124	-0.00025562	0.35795	0.00020736	579.3188812063715	55.849	0.67318	55.849	55.594	56.267	0					46	23	3	0	0	0	0.2061	1	13366	13366		53.317	53.317	1	1229500			53824	8527	30808	30809	65905	65905					0.05201103397371298
VPRASVPDGFL	11	Unmodified	_VPRASVPDGFL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.3199462890625	2	579.319306	1156.62406	0.69677	0.00040365	-0.15933	-9.2305E-05	0.53744	0.00031135	579.3191762888371	55.868	0.52036	55.939	55.618	56.138	0.070889					46	18	3	0	0	0	0.1269	1	13386	13386		37.771	3.3696	1	1326500			53825	8527	30808	30809	65906	65906					0.05201103397371298
VPRASVPDGFL	11	Unmodified	_VPRASVPDGFL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.3201904296875	2	579.319306	1156.62406	0.73203	0.00042408	0.093928	5.4415E-05	0.82596	0.00047849	579.3191488840253	55.962	0.59605	55.943	55.671	56.267	-0.019077					50	21	3	0	0	0	0.11084	1	13361	13361		39.213	16.477	1	1313500			53826	8527	30808	30809	65907	65907					0.05201103397371298
VPRATRKE	8	Unmodified	_VPRATRKE_					0	0	0			REV__ENSG00000086015|ENST00000361297|MAST2	REV__ENSG00000086015|ENST00000361297|MAST2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.78546142578125	2	478.785433	955.556313	0.11294	5.4075E-05	0.17339	8.3017E-05	0.28633	0.00013709	478.7854738798786	81.947	1.3592	82.016	81.507	82.866	0.068993					149	57	4	0	0	0	0.31088	1	21418	21418		28.487	28.487	1	5139400	+		53827	13972	30809	30810	65908	65908					0.0767569825721921
VPRAVFVDL	9	Unmodified	_VPRAVFVDL_					0	0	0		ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000475683.1_1_2:220116706-220118580:-|nuORF;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000152086|ENST00000312988|TUBA3E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.3003234863281	2	508.300384	1014.58622	0.26655	0.00013549	-0.23932	-0.00012165	0.027232	1.3842E-05	508.3003468402067	59.128	0.5806	59.128	58.832	59.412	0					48	20	3	0	0	0	0.15943	1	14390	14390		39.95	24.103	1	820830			53828	4999;6187	30810	30811	65909	65909					0.07950637202554844
VPREALAFI	9	Unmodified	_VPREALAFI_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.30023193359375	2	508.300384	1014.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.699	1	59.699	59.199	60.199	0								0	0	0	0.16485	1	14552	14552		31.268	3.0951	1				53829	1519	30811	30812	65910	65910					0.07950637202554844
VPREPPVSL	9	Unmodified	_VPREPPVSL_					0	0	0		nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO;ENST00000465745.6_1_9:35094156-35095562:-|nuORF;ENST00000474436.1_1_9:35093318-35095562:-|nuORF	nc|ENSG00000165282|Q8TEQ8-2|PIGO	nc|ENSG00000165282|Q8TEQ8-2|PIGO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.29034423828125	2	497.290017	992.565481	0.35591	0.00017699	0.18734	9.316E-05	0.54324	0.00027015	497.2900074459536	43.686	1.0475	43.686	43.388	44.436	0					61	38	2	0	0	0	0.022205	1	9588	9588		63.227	25.052	1	1333100			53830	5946	30812	30813	65911	65911					0.06890046822900331
VPRETLKLV	9	Unmodified	_VPRETLKLV_					0	0	0		ENSG00000182866|ENST00000336890|LCK;nc|ENSG00000182866|P06239-3|LCK;ENST00000469956.1_1_1:32741525-32742647:+|nuORF;nc|ENSG00000182866|P06239-2|LCK;ENST00000469765.5_1_1:32739930-32745396:+|nuORF	ENSG00000182866|ENST00000336890|LCK	ENSG00000182866|ENST00000336890|LCK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3158569335938	2	527.834591	1053.65463	0.56711	0.00029934	-0.48943	-0.00025834	0.077682	4.1003E-05	527.8344892973124	39.178	0.40984	39.277	39.155	39.565	0.099407					16	14	2	0	0	0	0.22674	1	8278	8278		22.736	0	1	109850			53831	7326	30813	30814	65912	65912					0.12994881782401535
VPREVLYKLY	10	Unmodified	_VPREVLYKLY_					0	0	0		ENSG00000126107|ENST00000372172|HECTD3	ENSG00000126107|ENST00000372172|HECTD3	ENSG00000126107|ENST00000372172|HECTD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.7525634765625	3	427.251813	1278.73361	0.14698	6.2798E-05	0.28578	0.0001221	0.43277	0.0001849	427.25157665498244	64.052	0.35883	64.052	63.771	64.13	0					19	12	2	0	0	0	0.32082	1	15882	15882		3.3196	0.47636	1	65642			53832	3258	30814	30815	65913	65913					0.10539109016713155
VPRFIKYTGY	10	Unmodified	_VPRFIKYTGY_					0	0	0		nc|ENSG00000177963|Q9NPQ8-2|RIC8A;nc|ENSG00000177963|Q9NPQ8-4|RIC8A;ENSG00000177963|ENST00000526104|RIC8A;nc|ENSG00000177963|Q9NPQ8-3|RIC8A;ENST00000530149.1_1_11:212820-213114:+|nuORF	nc|ENSG00000177963|Q9NPQ8-2|RIC8A	nc|ENSG00000177963|Q9NPQ8-2|RIC8A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3469848632812	2	622.345323	1242.67609	0.53361	0.00033209	2.3434	0.0014584	2.877	0.0017905	622.3464094542064	84.676	0.60997	84.676	84.405	85.015	0					39	22	2	0	0	0	0.40262	1	22197	22197		2.9952	0	1	240010			53833	7028	30815	30816	65914	65914					0.06446266811144596
VPRFQAVQI	9	Unmodified	_VPRFQAVQI_					0	0	0		ENSG00000258429|ENST00000288022|PDF	ENSG00000258429|ENST00000288022|PDF	ENSG00000258429|ENST00000288022|PDF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.300537109375	2	529.311284	1056.60801	0.43331	0.00022936	0.024736	1.3093E-05	0.45805	0.00024245	529.3112511107603	52.134	0.35355	52.184	52.009	52.363	0.050571					26	12	3	0	0	0	0.16284	1	12204	12204		30.637	18.105	1	352770			53834	8640	30816	30817	65915	65915					0.08197441951142537
VPRFQAVQI	9	Unmodified	_VPRFQAVQI_					0	0	0		ENSG00000258429|ENST00000288022|PDF	ENSG00000258429|ENST00000288022|PDF	ENSG00000258429|ENST00000288022|PDF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3004150390625	2	529.311284	1056.60801	0.31932	0.00016902	0.24965	0.00013214	0.56897	0.00030116	529.3112961775797	52.289	0.37986	52.288	52.115	52.495	-0.00080872					26	13	2	0	0	0	0.20651	1	12241	12241		26.884	13.376	1	449310			53835	8640	30816	30817	65916	65916					0.08197441951142537
VPRFVPTGYL	10	Unmodified	_VPRFVPTGYL_					0	0	0			REV__ENSG00000132357|ENST00000254691|CARD6	REV__ENSG00000132357|ENST00000254691|CARD6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.8140258789062	2	574.826766	1147.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.614	1	23.575	23.075	24.075	-0.038927								0	0	0	0.3726	1	3499	3499		5.2969	2.0156	1		+		53836	15563	30817	30818	65917	65917					0.07106595265395299
VPRGMSLLWP	10	Unmodified	_VPRGMSLLWP_					0	0	0			REV__ENST00000325147.13_1_11:204707-204863:-|nuORF	REV__ENST00000325147.13_1_11:204707-204863:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3211669921875	2	578.320794	1154.62703	0.31024	0.00017942	0.25437	0.00014711	0.56461	0.00032653	578.3207372612743	82.173	2.3333	82.242	81.461	83.795	0.068985					204	95	3	0	0	0	0.39935	1	21386	21386		3.5965	3.5965	1	1075100	+		53837	19994	30818	30819	65918	65918					0.05590655250534837
VPRGPTATARF	11	Unmodified	_VPRGPTATARF_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8309936523438	2	586.830372	1171.64619	0.42462	0.00024918	0.4641	0.00027235	0.88872	0.00052153	586.8306370567416	30.297	1.2024	30.297	29.86	31.062	0					133	42	5	0	0	0	1.1839E-05	5	5522	5476;5522;5569;5627;5677		122.57	82.331	1	3395600			53838	5002	30819	30820	65919;65920;65921;65922;65923	65920					0.06723327865779538
VPRGPTATARF	11	Unmodified	_VPRGPTATARF_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	586.830372	1171.64619	0.35472	0.00020816	0.49452	0.0002902	0.84924	0.00049836	586.8306703486949	30.351	1.1358	30.379	29.901	31.037	0.027946	0.040969	1.7401E-05	NaN	122.57	120	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3267100			53839	5002	30819	30820							0.06723327865779538
VPRGQGSQF	9	Unmodified	_VPRGQGSQF_					0	0	0		ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.254150390625	2	488.253966	974.493378	0.27699	0.00013524	-0.11749	-5.7363E-05	0.15951	7.7881E-05	488.2538702496645	21.684	1.1376	21.684	21.282	22.42	0					74	40	2	0	0	0	0.014206	1	2926	2926		72.968	36.841	1	542230			53840	1292	30820	30821	65924	65924					0.005111324691938535
VPRGQGSQF	9	Unmodified	_VPRGQGSQF_					0	0	0		ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.25390625	2	488.253966	974.493378	0.37701	0.00018408	0.26746	0.00013059	0.64448	0.00031467	488.25384407708464	21.71	1.2073	21.61	21.101	22.308	-0.10034					138	43	5	0	0	0	0.04299	1	2900	2900		55.503	19.376	1	659500			53841	1292	30820	30821	65925	65925					0.005111324691938535
VPRGQGSQF	9	Unmodified	_VPRGQGSQF_					0	0	0		ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.25390625	2	488.253966	974.493378	0.25841	0.00012617	-0.14082	-6.8757E-05	0.11759	5.7412E-05	488.2538377885541	21.687	1.2068	21.637	21.29	22.496	-0.049377					76	42	2	0	0	0	0.017549	1	2884	2884		67.838	27.881	1	708870			53842	1292	30820	30821	65926	65926					0.005111324691938535
VPRGQRAVVQ	10	Unmodified	_VPRGQRAVVQ_					0	0	0			REV__nc|ENSG00000198380|Q06210-2|GFPT1	REV__nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3306274414062	2	555.330539	1108.64652	0.25804	0.0001433	-0.054996	-3.0541E-05	0.20304	0.00011276	555.3303941314324	26.995	0.81394	26.983	26.741	27.555	-0.011562					55	28	3	0	0	0	0.2811	1	4530	4530		22.736	5.6234	1	380060	+		53843	18820	30821	30822	65927	65927					0.09654747585636869
VPRGQRAVVQ	10	Unmodified	_VPRGQRAVVQ_					0	0	0			REV__nc|ENSG00000198380|Q06210-2|GFPT1	REV__nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	555.330539	1108.64652	0.22056	0.00012248	0.017324	9.6208E-06	0.23788	0.0001321	555.3304949833889	26.946	0.84689	26.925	26.681	27.528	-0.021412	-0.026914	7.8117E-05	NaN	22.736	55	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343820	+		53844	18820	30821	30822							0.09654747585636869
VPRGQRAVVQ	10	Unmodified	_VPRGQRAVVQ_					0	0	0			REV__nc|ENSG00000198380|Q06210-2|GFPT1	REV__nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	555.330539	1108.64652	0.25804	0.0001433	-0.054996	-3.0541E-05	0.20304	0.00011276	555.3303941314324	26.995	0.81394	26.983	26.741	27.555	-0.011562	0.031536	-2.2071E-06	NaN	22.736	55	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380060	+		53845	18820	30821	30822							0.09654747585636869
VPRGRLLVL	9	Unmodified	_VPRGRLLVL_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.271728515625	2	511.845294	1021.67603	0.29361	0.00015028	0.26697	0.00013665	0.56059	0.00028693	511.84531959948964	43.54	1.2817	43.54	43.18	44.462	0					69	31	3	0	0	0	0.018829	1	9610	9610		81.613	39.519	1	1521600			53846	2212	30822	30823	65928	65928					0.16606311601799462
VPRGRLLVL	9	Unmodified	_VPRGRLLVL_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.8453369140625	2	511.845294	1021.67603	0.41873	0.00021433	0.19988	0.00010231	0.61862	0.00031664	511.84526570017346	43.327	0.76566	43.405	43.1	43.865	0.077515					65	27	3	0	0	0	0.0069594	1	9503	9503		71.134	35.089	1	1583900			53847	2212	30822	30823	65929	65929					0.16606311601799462
VPRGRLLVL	9	Unmodified	_VPRGRLLVL_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.8455505371094	2	511.845294	1021.67603	0.26366	0.00013495	0.36296	0.00018578	0.62662	0.00032073	511.8453641089086	43.314	0.90475	43.398	43.115	44.02	0.083996					71	26	4	0	0	0	0.062246	1	9489	9489		48.346	25.197	1	1308700			53848	2212	30822	30823	65930	65930					0.16606311601799462
VPRGVRKESQL	11	Unmodified	_VPRGVRKESQL_					0	0	0		nc|ENSG00000164691|Q8N103-3|TAGAP;nc|ENSG00000164691|Q8N103-2|TAGAP;ENSG00000164691|ENST00000367066|TAGAP	nc|ENSG00000164691|Q8N103-3|TAGAP	nc|ENSG00000164691|Q8N103-3|TAGAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.58587646484375	3	423.585966	1267.73607	-0.17566	-7.4408E-05	-0.23201	-9.8277E-05	-0.40767	-0.00017269	423.58587756288415	18.212	1.1077	18.212	17.898	19.006	0					63	38	3	0	0	0	0.26921	2	1870	1870;1917		24.957	13.892	1	1123000			53849	5866	30823	30824	65931;65932	65931					0.11290957474375318
VPRGVRKESQL	11	Unmodified	_VPRGVRKESQL_					0	0	0		nc|ENSG00000164691|Q8N103-3|TAGAP;nc|ENSG00000164691|Q8N103-2|TAGAP;ENSG00000164691|ENST00000367066|TAGAP	nc|ENSG00000164691|Q8N103-3|TAGAP	nc|ENSG00000164691|Q8N103-3|TAGAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.58575439453125	3	423.585966	1267.73607	-0.25955	-0.00010994	-0.1641	-6.9511E-05	-0.42365	-0.00017945	423.5858943373928	18.369	1.2462	18.251	17.985	19.232	-0.11739					85	43	5	0	0	0	0.33189	2	1882	1882;1933		19.987	8.9216	1	1216600			53850	5866	30823	30824	65933;65934	65933					0.11290957474375318
VPRGVRKESQL	11	Unmodified	_VPRGVRKESQL_					0	0	0		nc|ENSG00000164691|Q8N103-3|TAGAP;nc|ENSG00000164691|Q8N103-2|TAGAP;ENSG00000164691|ENST00000367066|TAGAP	nc|ENSG00000164691|Q8N103-3|TAGAP	nc|ENSG00000164691|Q8N103-3|TAGAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.5857849121094	3	423.585966	1267.73607	-0.32795	-0.00013892	-0.092623	-3.9234E-05	-0.42057	-0.00017815	423.585933525925	18.405	1.164	18.347	18.087	19.251	-0.058172					76	40	4	0	0	0	0.26921	2	1934	1885;1934		24.957	10.119	1	1245000			53851	5866	30823	30824	65935;65936	65936					0.11290957474375318
VPRGVRKESQL	11	Unmodified	_VPRGVRKESQL_					0	0	0		nc|ENSG00000164691|Q8N103-3|TAGAP;nc|ENSG00000164691|Q8N103-2|TAGAP;ENSG00000164691|ENST00000367066|TAGAP	nc|ENSG00000164691|Q8N103-3|TAGAP	nc|ENSG00000164691|Q8N103-3|TAGAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.8753662109375	2	634.875311	1267.73607	0.21503	0.00013652	-0.051502	-3.2697E-05	0.16353	0.00010382	634.8753323349639	18.434	0.50982	18.376	18.171	18.681	-0.058174					36	17	3	0	0	0	0.45367	1	1919	1919		4.1895	1.1943	1	93531			53852	5866	30823	30824	65937	65937					0.11290957474375318
VPRHRKNESL	10	Unmodified	_VPRHRKNESL_					0	0	0		ENST00000505896.5_1_5:49695109-49707239:-|nuORF;nc|ENSG00000170571|Q6PCB8-2|EMB;ENSG00000170571|ENST00000303221|EMB	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.57025146484375	3	412.570427	1234.68945	-0.11743	-4.845E-05	-0.35663	-0.00014713	-0.47406	-0.00019558	412.5702406554564	13.298	0.56265	13.199	13.011	13.573	-0.099291					36	19	4	0	0	0	0.3994	1	401	401		3.5871	3.5871	1	100660			53853	6465	30824	30825	65938	65938					0.0814951764309626
VPRIASKPIIV	11	Unmodified	_VPRIASKPIIV_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.8922729492188	2	596.892441	1191.77033	0.65144	0.00038884	-0.523	-0.00031218	0.12844	7.6663E-05	596.892127398093	43.33	0.47602	43.408	43.234	43.71	0.077515					33	16	3	0	0	0	0.082028	1	9523	9523		43.982	27.833	1	333630			53854	4239	30825	30826	65939	65939					0.1821140563326935
VPRIASKPIIV	11	Unmodified	_VPRIASKPIIV_					0	0	0		ENSG00000139505|ENST00000381801|MTMR6;nc|ENSG00000139505|Q9Y217-2|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	ENSG00000139505|ENST00000381801|MTMR6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.892333984375	2	596.892441	1191.77033	0.42829	0.00025564	-0.12519	-7.4726E-05	0.3031	0.00018092	596.8922953936271	43.353	0.35897	43.437	43.19	43.549	0.083992					29	12	3	0	0	0	0.13465	1	9515	9515		37.075	25.58	1	311540			53855	4239	30825	30826	65940	65940					0.1821140563326935
VPRIFLVKV	9	Unmodified	_VPRIFLVKV_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498209.6_1_11:2937879-2942743:+|nuORF;ENST00000467719.5_1_11:2937762-2940985:+|nuORF	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.3058471679688	2	535.85787	1069.70119	0.54772	0.0002935	-0.28054	-0.00015033	0.26717	0.00014317	535.8576888531769	55.558	0.40542	55.629	55.398	55.804	0.070885					23	14	2	0	0	0	0.25622	1	13267	13267		3.9444	1.6417	1	350500			53856	2318	30826	30827	65941	65941					0.1691236640435818
VPRIQPQSL	9	Unmodified	_VPRIQPQSL_					0	0	0		nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7963256835938	2	519.308741	1036.60293	0.20396	0.00010592	-0.46097	-0.00023938	-0.25701	-0.00013347	519.3085287497893	42.245	0.58987	42.245	41.9	42.49	0					36	20	2	0	0	0	0.13296	1	9134	9134		33.445	5.8161	1	809620			53857	5968	30827	30828	65942	65942					0.08609138088513646
VPRIQPQSL	9	Unmodified	_VPRIQPQSL_					0	0	0		nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7872924804688	2	519.308741	1036.60293	0.4788	0.00024865	-0.62713	-0.00032567	-0.14833	-7.7027E-05	519.3082780867446	41.994	0.58527	42.084	41.853	42.439	0.090252					43	20	3	0	0	0	0.16284	1	9088	9088		18.146	0	1	927490			53858	5968	30827	30828	65943	65943					0.08609138088513646
VPRIQPQSL	9	Unmodified	_VPRIQPQSL_					0	0	0		nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	nc|ENSG00000165506|Q9NVR5-2|DNAAF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7960815429688	2	519.308741	1036.60293	0.54424	0.00028263	-0.823	-0.00042739	-0.27876	-0.00014477	519.3082966727504	41.918	0.57012	42.015	41.79	42.36	0.096626					45	19	3	0	0	0	0.13748	1	9034	9034		32.786	2.9451	1	906080			53859	5968	30827	30828	65944	65944					0.08609138088513646
VPRKLIPITI	10	Unmodified	_VPRKLIPITI_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP;ENST00000475896.5_1_3:100583650-100712249:-|nuORF	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.3115844726562	2	575.389534	1148.76451	0.30906	0.00017783	-0.22029	-0.00012675	0.088768	5.1076E-05	575.3894206805624	53.796	0.44643	53.853	53.714	54.161	0.056255					29	16	2	0	0	0	0.23542	1	12749	12749		20.415	0	1	341150			53860	5110	30828	30829	65945	65945					0.19608307121620783
VPRKLIPITI	10	Unmodified	_VPRKLIPITI_					0	0	0		ENSG00000154175|ENST00000471714|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP;ENST00000475896.5_1_3:100583650-100712249:-|nuORF	ENSG00000154175|ENST00000471714|ABI3BP	ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3115844726562	2	575.389534	1148.76451	0.36642	0.00021084	0.10687	6.1492E-05	0.47329	0.00027233	575.3895110355031	53.85	0.45914	53.84	53.745	54.204	-0.0096092					24	16	2	0	0	0	0.29589	1	12799	12799		17.113	2.2746	1	267640			53861	5110	30828	30829	65946	65946					0.19608307121620783
VPRKPVKHT	9	Unmodified	_VPRKPVKHT_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3316040039062	2	531.33255	1060.65055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.072	1	12.072	11.572	12.572	0								0	0	0	0.24715	1	17	17		7.2892	0	1				53862	7913	30829	30830	65947	65947					0.12264837079374047
VPRKPVKHTAM	11	Oxidation (M)	_VPRKPVKHTAM(Oxidation (M))_		VPRKPVKHTAM(1)		VPRKPVKHTAM(72)	0	0	1		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.2483215332031	3	427.248297	1278.72306	-0.42115	-0.00017993	0.054629	2.334E-05	-0.36652	-0.00015659	427.24845237523374	12.29	0.85208	12.29	12.151	13.003	0					84	29	5	0	0	0	0.0088115	1	91	91		72.187	57.23	1	1198200			53863	7913	30830	30831	65948	65948		863			0.09484803090617788
VPRKPVKHTAM	11	Oxidation (M)	_VPRKPVKHTAM(Oxidation (M))_		VPRKPVKHTAM(1)		VPRKPVKHTAM(50)	0	0	1		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.3689575195312	2	640.368807	1278.72306	0.22002	0.00014089	-0.49657	-0.00031799	-0.27656	-0.0001771	640.3684871635701	12.293	0.50834	12.197	12.072	12.58	-0.096607					40	17	4	0	0	0	0.062106	1	81	81		49.742	44.01	1	302550			53864	7913	30830	30831	65949	65949		863			0.09484803090617788
VPRKPVKHTAM	11	Oxidation (M)	_VPRKPVKHTAM(Oxidation (M))_		VPRKPVKHTAM(1)		VPRKPVKHTAM(82)	0	0	1		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.248291015625	3	427.248297	1278.72306	-0.35436	-0.0001514	-0.1052	-4.4948E-05	-0.45956	-0.00019635	427.24840072035755	12.294	0.7515	12.197	12.037	12.788	-0.096607					82	26	5	0	0	0	0.0043433	1	92	92		81.642	66.685	1	1228000			53865	7913	30830	30831	65950	65950		863			0.09484803090617788
VPRKPVKHTAM	11	Oxidation (M)	_VPRKPVKHTAM(Oxidation (M))_		VPRKPVKHTAM(1)		VPRKPVKHTAM(44)	0	0	1		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.36865234375	2	640.368807	1278.72306	0.072947	4.6713E-05	-0.11731	-7.512E-05	-0.044361	-2.8407E-05	640.368748171592	12.331	0.46108	12.263	12.118	12.579	-0.06806					44	15	4	0	0	0	0.08061	1	85	85		44.392	35.647	1	266530			53866	7913	30830	30831	65951	65951		863			0.09484803090617788
VPRKPVKHTAM	11	Oxidation (M)	_VPRKPVKHTAM(Oxidation (M))_		VPRKPVKHTAM(1)		VPRKPVKHTAM(78)	0	0	1		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.24835205078125	3	427.248297	1278.72306	-0.48452	-0.00020701	0.10936	4.6725E-05	-0.37516	-0.00016029	427.2485154484595	12.331	0.84572	12.263	12.118	12.964	-0.06806					87	28	5	0	0	0	0.0061271	1	95	95		77.867	62.91	1	1212000			53867	7913	30830	30831	65952	65952		863			0.09484803090617788
VPRKSPKYLAL	11	Unmodified	_VPRKSPKYLAL_					0	0	0		nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENST00000497787.1_1_1:151379709-151380628:-|nuORF	nc|ENSG00000143442|Q7Z3K3-2|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8874816894531	3	424.599324	1270.77614	-0.022483	-9.5461E-06	-0.24554	-0.00010426	-0.26802	-0.0001138	424.5991839050332	30.517	0.97674	30.517	30.225	31.202	0					72	34	3	0	0	0	0.31141	1	5585	5585		26.121	16.357	1	594840			53868	4516	30831	30832	65953	65953					0.15158504144960716
VPRKSPKYLAL	11	Unmodified	_VPRKSPKYLAL_					0	0	0		nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENST00000497787.1_1_1:151379709-151380628:-|nuORF	nc|ENSG00000143442|Q7Z3K3-2|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.8874816894531	3	424.599324	1270.77614	-0.086053	-3.6538E-05	-0.27049	-0.00011485	-0.35655	-0.00015139	424.59919285482096	30.575	0.94849	30.603	30.274	31.222	0.027946					77	33	4	0	0	0	0.32296	1	5595	5595		22.109	12.345	1	487940			53869	4516	30831	30832	65954	65954					0.15158504144960716
VPRKSPKYLAL	11	Unmodified	_VPRKSPKYLAL_					0	0	0		nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENST00000497787.1_1_1:151379709-151380628:-|nuORF	nc|ENSG00000143442|Q7Z3K3-2|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.88726806640625	3	424.599324	1270.77614	-0.25985	-0.00011033	-0.028733	-1.22E-05	-0.28858	-0.00012253	424.5992597465652	30.548	0.8863	30.575	30.25	31.136	0.027159					80	31	4	0	0	0	0.32466	1	5615	5615		19.144	2.8694	1	508510			53870	4516	30831	30832	65955	65955					0.15158504144960716
VPRLGVML	8	Oxidation (M)	_VPRLGVM(Oxidation (M))L_		VPRLGVM(1)L		VPRLGVM(64)L	0	0	1		ENSG00000105655|ENST00000338128|ISYNA1;ENST00000577916.6_1_19:18547702-18548789:-|nuORF	ENSG00000105655|ENST00000338128|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7705078125	2	450.770406	899.526258	0.51093	0.00023031	0.2044	9.2139E-05	0.71533	0.00032245	450.77030824468915	50.845	2.2776	50.845	50.217	52.494	0					157	83	4	0	0	0	0.082568	3	11810	11765;11810;11863		63.563	16.642	1	1562200			53871	2003	30832	30833	65956;65957;65958	65957		245			0.07247623267687686
VPRLGVML	8	Oxidation (M)	_VPRLGVM(Oxidation (M))L_		VPRLGVM(1)L		VPRLGVM(64)L	0	0	1		ENSG00000105655|ENST00000338128|ISYNA1;ENST00000577916.6_1_19:18547702-18548789:-|nuORF	ENSG00000105655|ENST00000338128|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7705383300781	2	450.770406	899.526258	0.45437	0.00020482	0.25075	0.00011303	0.70512	0.00031785	450.77029096054594	50.789	2.0918	50.835	50.186	52.278	0.046574					141	76	4	0	0	0	0.082568	2	11797	11797;11847		63.563	16.642	1	1680700			53872	2003	30832	30833	65959;65960	65959		245			0.07247623267687686
VPRLGVML	8	Oxidation (M)	_VPRLGVM(Oxidation (M))L_		VPRLGVM(1)L		VPRLGVM(74)L	0	0	1		ENSG00000105655|ENST00000338128|ISYNA1;ENST00000577916.6_1_19:18547702-18548789:-|nuORF	ENSG00000105655|ENST00000338128|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7705078125	2	450.770406	899.526258	0.50823	0.00022909	0.20637	9.3024E-05	0.71459	0.00032212	450.7703248864181	50.862	2.2088	50.872	50.35	52.559	0.0095634					160	82	4	0	0	0	0.058048	2	11796	11796;11845		74.396	27.475	1	1646300			53873	2003	30832	30833	65961;65962	65961		245			0.07247623267687686
VPRLLGDIL	9	Unmodified	_VPRLLGDIL_					0	0	0		ENSG00000109919|ENST00000302503|MTCH2;ENST00000534074.5_1_11:47640387-47650630:-|nuORF	ENSG00000109919|ENST00000302503|MTCH2	ENSG00000109919|ENST00000302503|MTCH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.28173828125	2	498.316035	994.617516	0.48554	0.00024195	0.2477	0.00012343	0.73323	0.00036538	498.3160888354121	68.905	0.6686	68.977	68.649	69.318	0.071938					42	24	3	0	0	0	0.22061	1	17343	17343		24.021	1.2843	1	278180			53874	2279	30833	30834	65963	65963					0.11999210236660929
VPRLSSPALI	10	Unmodified	_VPRLSSPALI_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3133544921875	2	526.826766	1051.63898	0.2977	0.00015683	-2.4773	-0.0013051	-2.1797	-0.0011483	526.8268647835506	53.694	0.28387	53.75	53.585	53.869	0.056255					13	10	2	0	0	0	0.30079	1	12656	12656		10.074	0	1	198060	+		53875	18733	30834	30835	65964	65964					0.11522595265364544
VPRNRLGRTRA	11	Unmodified	_VPRNRLGRTRA_					0	0	0			REV__ENST00000382363.7_1_22:30774947-30775040:-|nuORF	REV__ENST00000382363.7_1_22:30774947-30775040:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.59771728515625	3	432.597088	1294.76943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.789	1	98.782	98.282	99.282	-0.006897								0	0	0	0.37548	1	26469	26469		2.6312	0.13275	1		+		53876	20571	30835	30836	65965	65965					0.13384004036925035
VPRNRLGRTRA	11	Unmodified	_VPRNRLGRTRA_					0	0	0			REV__ENST00000382363.7_1_22:30774947-30775040:-|nuORF	REV__ENST00000382363.7_1_22:30774947-30775040:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5975646972656	3	432.597088	1294.76943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.911	1	98.905	98.405	99.405	-0.006897								0	0	0	0.37548	1	26501	26501		2.6312	0.19645	1		+		53877	20571	30835	30836	65966	65966					0.13384004036925035
VPRNYDPAL	9	Unmodified	_VPRNYDPAL_					0	0	0		nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;ENSG00000164934|ENST00000612750|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7781982421875	2	522.777274	1043.53999	0.87263	0.00045619	0.47145	0.00024646	1.3441	0.00070265	522.7775865513792	37.315	0.9967	37.315	36.93	37.926	0					67	35	3	0	0	0	0.088443	1	7672	7672		39.95	9.3132	1	956620			53878	5903	30836	30837	65967	65967					0.019965723004588654
VPRNYDPAL	9	Unmodified	_VPRNYDPAL_					0	0	0		nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;ENSG00000164934|ENST00000612750|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.77783203125	2	522.777274	1043.53999	0.48773	0.00025497	0.93211	0.00048729	1.4198	0.00074226	522.7777982469278	37.246	0.86695	37.334	36.95	37.817	0.08741					61	28	3	0	0	0	0.088443	2	7613	7613;7657		39.95	9.3132	1	689240			53879	5903	30836	30837	65968;65969	65968					0.019965723004588654
VPRNYDPAL	9	Unmodified	_VPRNYDPAL_					0	0	0		nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF;ENSG00000164934|ENST00000612750|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	nc|ENSG00000164934|Q9NV06-2|DCAF13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7776489257812	2	522.777274	1043.53999	0.58552	0.00030609	0.75445	0.00039441	1.34	0.0007005	522.7776644777582	37.184	0.88956	37.277	36.951	37.84	0.093018					69	32	3	0	0	0	0.063853	1	7622	7622		47.749	5.9091	1	781090			53880	5903	30836	30837	65970	65970					0.019965723004588654
VPRPAARVAL	10	Unmodified	_VPRPAARVAL_					0	0	0		ENST00000495007.5_1_21:45553579-45553738:+|nuORF;ENST00000480786.1_1_21:45553579-45560342:+|nuORF;nc|ENSG00000160221|P0DPI2-2|GATD3;ENSG00000160221|ENST00000291577|GATD3	ENST00000495007.5_1_21:45553579-45553738:+|nuORF	ENST00000495007.5_1_21:45553579-45553738:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3331298828125	2	525.33255	1048.65055	0.41386	0.00021741	0.35016	0.00018395	0.76402	0.00040136	525.3328468426953	33.177	0.41911	33.233	33.002	33.421	0.055309					23	14	2	0	0	0	0.31867	1	6426	6426		18.146	10.857	1	219200			53881	5450	30837	30838	65971	65971					0.1281683707936736
VPRPAARVAL	10	Unmodified	_VPRPAARVAL_					0	0	0		ENST00000495007.5_1_21:45553579-45553738:+|nuORF;ENST00000480786.1_1_21:45553579-45560342:+|nuORF;nc|ENSG00000160221|P0DPI2-2|GATD3;ENSG00000160221|ENST00000291577|GATD3	ENST00000495007.5_1_21:45553579-45553738:+|nuORF	ENST00000495007.5_1_21:45553579-45553738:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	525.33255	1048.65055	0.40677	0.00021369	0.69172	0.00036338	1.0985	0.00057707	525.3330702405411	33.267	0.39264	33.267	33.091	33.484	0	0.024772	-4.329E-05	NaN	18.146	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187320			53882	5450	30837	30838							0.1281683707936736
VPRPAARVAL	10	Unmodified	_VPRPAARVAL_					0	0	0		ENST00000495007.5_1_21:45553579-45553738:+|nuORF;ENST00000480786.1_1_21:45553579-45560342:+|nuORF;nc|ENSG00000160221|P0DPI2-2|GATD3;ENSG00000160221|ENST00000291577|GATD3	ENST00000495007.5_1_21:45553579-45553738:+|nuORF	ENST00000495007.5_1_21:45553579-45553738:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	525.33255	1048.65055	0.40521	0.00021287	1.0842	0.00056956	1.4894	0.00078243	525.3331114991116	33.174	0.36023	33.228	33.042	33.403	0.054375	-0.014704	0.00036906	NaN	18.146	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210940			53883	5450	30837	30838							0.1281683707936736
VPRPAGGEF	9	Unmodified	_VPRPAGGEF_					0	0	0		ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1;nc|ENSG00000196730|P53355-4|DAPK1	ENSG00000196730|ENST00000408954|DAPK1	ENSG00000196730|ENST00000408954|DAPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2455749511719	2	465.245609	928.476666	-0.10755	-5.0039E-05	0.20054	9.3301E-05	0.092988	4.3262E-05	465.24572325932513	33.021	0.56083	33.021	32.749	33.31	0					35	19	2	0	0	0	0.023967	2	6357	6357;6409		62.573	26.528	1	394060			53884	7901	30838	30839	65972;65973	65972					0.009566315832444161
VPRPAGGEF	9	Unmodified	_VPRPAGGEF_					0	0	0		ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1;nc|ENSG00000196730|P53355-4|DAPK1	ENSG00000196730|ENST00000408954|DAPK1	ENSG00000196730|ENST00000408954|DAPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.24542236328125	2	465.245609	928.476666	-0.028141	-1.3093E-05	0.036874	1.7156E-05	0.008733	4.063E-06	465.2455477700482	32.928	0.44239	32.983	32.786	33.228	0.055309					32	15	3	0	0	0	0.069366	1	6314	6314		45.7	22.551	1	258970			53885	7901	30838	30839	65974	65974					0.009566315832444161
VPRPAGGEF	9	Unmodified	_VPRPAGGEF_					0	0	0		ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1;nc|ENSG00000196730|P53355-4|DAPK1	ENSG00000196730|ENST00000408954|DAPK1	ENSG00000196730|ENST00000408954|DAPK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2452697753906	2	465.245609	928.476666	0.15473	7.1987E-05	-0.38323	-0.0001783	-0.2285	-0.00010631	465.24540464131496	32.902	0.52432	32.956	32.791	33.316	0.054375					32	18	3	0	0	0	0.047483	2	6319	6319;6378		53.833	25.346	1	402210			53886	7901	30838	30839	65975;65976	65975					0.009566315832444161
VPRPATSLARF	11	Unmodified	_VPRPATSLARF_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A;ENST00000583079.1_1_17:18023566-18025792:+|nuORF	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.5717468261719	3	405.571657	1213.69314	-0.0097862	-3.969E-06	0.05961	2.4176E-05	0.049824	2.0207E-05	405.5716847081007	32.868	1.4193	32.868	32.145	33.564	0					110	50	3	0	0	0	0.066191	3	6261	6261;6308;6354		48.561	28.146	1	1155200			53887	1405	30839	30840	65977;65978;65979	65977					0.0948418741693331
VPRPATSLARF	11	Unmodified	_VPRPATSLARF_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A;ENST00000583079.1_1_17:18023566-18025792:+|nuORF	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5716552734375	3	405.571657	1213.69314	0.027848	1.1294E-05	0.021099	8.5573E-06	0.048947	1.9852E-05	405.57164948632345	32.686	1.0467	32.742	32.182	33.228	0.055309					97	37	3	0	0	0	0.066191	2	6218	6218;6270		48.561	28.146	1	1220300			53888	1405	30839	30840	65980;65981	65980					0.0948418741693331
VPRPATSLARF	11	Unmodified	_VPRPATSLARF_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A;ENST00000583079.1_1_17:18023566-18025792:+|nuORF	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.57171630859375	3	405.571657	1213.69314	-0.058153	-2.3585E-05	0.042463	1.7222E-05	-0.01569	-6.3634E-06	405.57168000013445	32.732	1.1174	32.787	32.198	33.316	0.054375					105	40	3	0	0	0	0.078698	3	6261	6212;6261;6309		44.945	21.653	1	1096700			53889	1405	30839	30840	65982;65983;65984	65983					0.0948418741693331
VPRPGKAAF	9	Unmodified	_VPRPGKAAF_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.7791748046875	2	471.779619	941.544686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.564	1	25.564	25.064	26.064	0								0	0	0	0.078733	1	4089	4089		52.268	18.166	1				53890	3333	30840	30841	65985	65985					0.07157501233893981
VPRPGKAAF	9	Unmodified	_VPRPGKAAF_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7793273925781	2	471.779619	941.544686	-0.1119	-5.2794E-05	-0.061891	-2.9199E-05	-0.1738	-8.1993E-05	471.77944859731014	25.646	0.81075	25.59	25.074	25.885	-0.055931					52	27	3	0	0	0	0.015402	3	4108	4095;4108;4162		71.134	37.031	1	440850			53891	3333	30840	30841	65986;65987;65988	65987					0.07157501233893981
VPRPGKAAF	9	Unmodified	_VPRPGKAAF_					0	0	0		nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF	nc|ENSG00000127663|O94953|KDM4B	nc|ENSG00000127663|O94953|KDM4B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.7793884277344	2	471.779619	941.544686	-0.044413	-2.0953E-05	-0.11707	-5.5233E-05	-0.16149	-7.6187E-05	471.77945125488515	25.665	0.86711	25.643	25.056	25.923	-0.022236					54	30	3	0	0	0	0.068501	1	4109	4109		46.021	11.919	1	476320			53892	3333	30840	30841	65989	65989					0.07157501233893981
VPRPGTSL	8	Unmodified	_VPRPGTSL_					0	0	0		nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-6|TTC8;ENST00000556567.5_1_14:89291033-89307657:+|nuORF	nc|ENSG00000165533|Q8TAM2-3|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.20367431640625	2	413.742702	825.470852	0.12621	5.2219E-05	-0.58639	-0.00024262	-0.46018	-0.0001904	413.74247178883223	29.712	0.5687	29.712	29.465	30.034	0					29	19	2	0	0	0	0.21873	1	5368	5368		49.933	11.959	1	188100			53893	5975	30841	30842	65990	65990					0.05113533071573784
VPRPGTSL	8	Unmodified	_VPRPGTSL_					0	0	0		nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-6|TTC8;ENST00000556567.5_1_14:89291033-89307657:+|nuORF	nc|ENSG00000165533|Q8TAM2-3|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.2038879394531	2	413.742702	825.470852	0.32377	0.00013396	-0.9246	-0.00038255	-0.60083	-0.00024859	413.7423864919023	29.671	0.69891	29.683	29.389	30.088	0.012264					35	23	3	0	0	0	0.27906	1	5358	5358		41.84	3.8656	1	206680			53894	5975	30841	30842	65991	65991					0.05113533071573784
VPRPGTSL	8	Unmodified	_VPRPGTSL_					0	0	0		nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-6|TTC8;ENST00000556567.5_1_14:89291033-89307657:+|nuORF	nc|ENSG00000165533|Q8TAM2-3|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.2043151855469	2	413.742702	825.470852	-0.0083738	-3.4646E-06	-0.49537	-0.00020495	-0.50374	-0.00020842	413.74254438314716	29.689	0.5245	29.702	29.481	30.005	0.013474					26	17	2	0	0	0	0.27906	1	5331	5331		41.84	11.203	1	237520			53895	5975	30841	30842	65992	65992					0.05113533071573784
VPRPLRAVEL	10	Unmodified	_VPRPLRAVEL_					0	0	0		CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.35888671875	2	575.358765	1148.70298	0.50082	0.00028815	-0.13626	-7.8396E-05	0.36457	0.00020976	575.3585731791133	43.373	0.39088	43.451	43.263	43.654	0.077518					21	13	2	0	0	0	0.29092	1	9531	9531		21.537	1.1224	1	272070			53896	241	30842	30843	65993	65993					0.1345737542230836
VPRPLRAVEL	10	Unmodified	_VPRPLRAVEL_					0	0	0		CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	575.358765	1148.70298	0.19443	0.00011187	0.34869	0.00020062	0.54312	0.00031249	575.3589994017768	43.599	0.35255	43.599	43.414	43.767	0	0.096856	0.00045664	NaN	21.537	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254390			53897	241	30842	30843							0.1345737542230836
VPRPLRAVEL	10	Unmodified	_VPRPLRAVEL_					0	0	0		CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	575.358765	1148.70298	0.30192	0.00017371	-0.12417	-7.1444E-05	0.17775	0.00010227	575.3586319260859	43.373	0.46705	43.457	43.217	43.684	0.083996	-0.045407	-8.7496E-05	NaN	21.537	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255670			53898	241	30842	30843							0.1345737542230836
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3695068359375	2	633.369861	1264.72517	-0.057243	-3.6256E-05	-0.44058	-0.00027905	-0.49782	-0.00031531	633.3694829781047	99.148	1.0904	99.148	98.842	99.933	0					240	139	2	0	0	0	0.45108	3	26510	26510;26541;26635		4.5289	1.7937	1	191160			53899	8163	30843	30844	65994;65995;65996	65994					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.369140625	2	633.369861	1264.72517	-0.059909	-3.7945E-05	-0.95768	-0.00060657	-1.0176	-0.00064451	633.3690211402467	102.22	0.3121	102.22	102.07	102.38	0					71	45	2	0	0	0	0.46475	1	27238	27238		2.7352	0	1	93399			53900	8163	30843	30844	65997	65997					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3699951171875	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.254	1	92.254	91.754	92.754	0								0	0	0	0.3255	1	24529	24529		13.615	6.0059	1				53901	8163	30843	30844	65998	65998					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.36962890625	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.459	1	92.459	91.959	92.959	0								0	0	0	0.36839	1	24590	24590		4.1895	0.59301	1				53902	8163	30843	30844	65999	65999					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3687744140625	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.729	1	92.729	92.229	93.229	0								0	0	0	0.36685	1	24674	24674		4.5289	0	1				53903	8163	30843	30844	66000	66000					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.369140625	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.862	1	92.862	92.362	93.362	0								0	0	0	0.35283	1	24715	24715		7.609	2.3121	1				53904	8163	30843	30844	66001	66001					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.369140625	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.131	1	93.131	92.631	93.631	0								0	0	0	0.35283	1	24796	24796		7.609	4.3276	1				53905	8163	30843	30844	66002	66002					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.368896484375	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.197	1	93.197	92.697	93.697	0								0	0	0	0.36517	1	24815	24815		4.897	1.6157	1				53906	8163	30843	30844	66003	66003					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.36962890625	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.38	1	93.38	92.88	93.88	0								0	0	0	0.36839	1	24869	24869		4.1895	0	1				53907	8163	30843	30844	66004	66004					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3695678710938	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.395	1	93.395	92.895	93.895	0								0	0	0	0.36685	1	24873	24873		4.5289	1.2476	1				53908	8163	30843	30844	66005	66005					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.369140625	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.418	1	93.418	92.918	93.918	0								0	0	0	0.35728	1	24880	24880		6.6304	2.1015	1				53909	8163	30843	30844	66006	66006					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3696899414062	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.534	1	93.534	93.034	94.034	0								0	0	0	0.36685	1	24915	24915		4.5289	0	1				53910	8163	30843	30844	66007	66007					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3692016601562	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.792	1	93.792	93.292	94.292	0								0	0	0	0.36517	1	24993	24993		4.897	1.3005	1				53911	8163	30843	30844	66008	66008					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.369384765625	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.828	1	93.828	93.328	94.328	0								0	0	0	0.35728	1	25004	25004		6.6304	2.1015	1				53912	8163	30843	30844	66009	66009					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.369384765625	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.957	1	93.957	93.457	94.457	0								0	0	0	0.34127	1	25044	25044		10.151	5.6217	1				53913	8163	30843	30844	66010	66010					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.369873046875	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.46	1	102.46	101.96	102.96	0								0	0	0	0.37501	1	27262	27262		2.7352	0	1				53914	8163	30843	30844	66011	66011					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3713989257812	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.58	1	102.58	102.08	103.08	0								0	0	0	0.37501	1	27286	27286		2.7352	0	1				53915	8163	30843	30844	66012	66012					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8248291015625	2	633.369861	1264.72517	-0.05962	-3.7762E-05	-0.45541	-0.00028844	-0.51503	-0.00032621	633.36973568668	100.02	0.15498	100.02	99.933	100.09	0					32	20	2	0	0	0	0.33105	1	26752	26752		6.6304	2.686	1	160380			53916	8163	30843	30844	66013	66013					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3692016601562	2	633.369861	1264.72517	0.37729	0.00023896	-0.98299	-0.0006226	-0.6057	-0.00038363	633.3694672473117	91.74	1.3581	91.831	91.476	92.834	0.090675					153	94	2	0	0	0	0.40826	2	24626	24566;24626		10.151	1.995	1	221760			53917	8163	30843	30844	66014;66015	66015					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.3696899414062	2	633.369861	1264.72517	0.16521	0.00010464	0.035933	2.2759E-05	0.20114	0.0001274	633.3702287610208	102.36	0.62215	102.38	102.23	102.85	0.016685					136	89	2	0	0	0	0.45108	3	27239	27239;27257;27283		4.5289	1.5336	1	157140			53918	8163	30843	30844	66016;66017;66018	66016					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.8256225585938	2	633.369861	1264.72517	0.16254	0.00010295	-0.41933	-0.00026559	-0.25679	-0.00016264	633.3697677426845	100.16	0.28217	100.2	100.14	100.42	0.038994					57	37	2	0	0	0	0.33198	1	26825	26825		4.5289	1.7937	1	127070			53919	8163	30843	30844	66019	66019					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.870849609375	2	633.369861	1264.72517	0.41626	0.00026365	-0.76528	-0.00048471	-0.34902	-0.00022106	633.3695081612177	100.46	0.43477	100.46	100.32	100.76	-0.006897					80	60	2	0	0	0	0.46475	1	26872	26872		2.7352	0	1	112380			53920	8163	30843	30844	66020	66020					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.36865234375	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.113	1	93.114	92.614	93.614	0.00046539								0	0	0	0.3255	1	24787	24787		13.615	8.318	1				53921	8163	30843	30844	66021	66021					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3694458007812	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.235	1	93.235	92.735	93.735	-0.00051117								0	0	0	0.34127	1	24823	24823		10.151	1.995	1				53922	8163	30843	30844	66022	66022					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3692626953125	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.7	1	102.69	102.19	103.19	-0.0033646								0	0	0	0.36685	1	27339	27339		4.5289	1.2476	1				53923	8163	30843	30844	66023	66023					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	633.369861	1264.72517	0.16595	0.0001051	-1.0382	-0.00065758	-0.87229	-0.00055248	633.3689705012343	102.11	0.51765	102.12	101.74	102.26	0.016685	-0.046437	-5.166E-05	NaN	2.7352	96	74	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107050			53924	8163	30843	30844							0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	NOS1AP|p.R207Gfs*32|1|0.46|ENSG00000198929|chr1:162355208-162355209|-/GG|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	633.369861	1264.72517	0.16518	0.00010462	-0.55054	-0.0003487	-0.38537	-0.00024408	633.3694577274125	100.48	0.24081	100.52	100.42	100.66	0.038994	0.029385	0.00015057	NaN	2.7352	52	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99443			53925	8163	30843	30844							0.10339555100085818
VPRPPQTSL	9	Unmodified	_VPRPPQTSL_					0	0	0		nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ;ENST00000600632.1_1_19:15534992-15535583:-|nuORF;nc|ENSG00000011451|O95785-2|WIZ	nc|ENSG00000011451|O95785-3|WIZ	nc|ENSG00000011451|O95785-3|WIZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.78790283203125	2	497.787641	993.56073	0.53994	0.00026878	-1.6184	-0.00080562	-1.0785	-0.00053685	497.78615811277814	36.719	1.2218	36.719	36.037	37.259	0					96	43	4	0	0	0	0.0028542	6	7459	7408;7459;7509;7517;7535;7571		103.42	53.486	1	1822400			53926	443	30844	30845	66024;66025;66026;66027;66028;66029	66025					0.0636916268015284
VPRPPQTSL	9	Unmodified	_VPRPPQTSL_					0	0	0		nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ;ENST00000600632.1_1_19:15534992-15535583:-|nuORF;nc|ENSG00000011451|O95785-2|WIZ	nc|ENSG00000011451|O95785-3|WIZ	nc|ENSG00000011451|O95785-3|WIZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7876892089844	2	497.787641	993.56073	0.51286	0.0002553	-1.4908	-0.00074211	-0.97796	-0.00048682	497.78611777164247	36.588	1.3424	36.675	35.905	37.247	0.087406					99	48	4	0	0	0	0.0037449	4	7400	7400;7449;7483;7498		96.367	45.512	1	2269500			53927	443	30844	30845	66030;66031;66032;66033	66030					0.0636916268015284
VPRPPQTSL	9	Unmodified	_VPRPPQTSL_					0	0	0		nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ;ENST00000600632.1_1_19:15534992-15535583:-|nuORF;nc|ENSG00000011451|O95785-2|WIZ	nc|ENSG00000011451|O95785-3|WIZ	nc|ENSG00000011451|O95785-3|WIZ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.787841796875	2	497.787641	993.56073	0.77767	0.00038712	-1.9935	-0.00099236	-1.2159	-0.00060525	497.7859994356273	36.54	1.2048	36.629	35.962	37.166	0.089584					98	43	4	0	0	0	0.001957	4	7425	7374;7425;7473;7493		110.55	60.62	1	2297500			53928	443	30844	30845	66034;66035;66036;66037	66035					0.0636916268015284
VPRPPQTSL	9	Unmodified	_VPRPPQTSL_					0	0	0		nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ;ENST00000600632.1_1_19:15534992-15535583:-|nuORF;nc|ENSG00000011451|O95785-2|WIZ	nc|ENSG00000011451|O95785-3|WIZ	nc|ENSG00000011451|O95785-3|WIZ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7808837890625	2	497.787641	993.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.892	1	36.985	36.485	37.485	0.093018								0	0	0	0.014903	1	7534	7534		72.968	20.7	1				53929	443	30844	30845	66038	66038					0.0636916268015284
VPRPPQTSL	9	Unmodified	_VPRPPQTSL_					0	0	0		nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785|WIZ;ENST00000600632.1_1_19:15534992-15535583:-|nuORF;nc|ENSG00000011451|O95785-2|WIZ	nc|ENSG00000011451|O95785-3|WIZ	nc|ENSG00000011451|O95785-3|WIZ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7821960449219	2	497.787641	993.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.918	1	37.011	36.511	37.511	0.093018								0	0	0	0.067964	1	7542	7542		55.503	11.644	1				53930	443	30844	30845	66039	66039					0.0636916268015284
VPRPPSLLATL	11	Unmodified	_VPRPPSLLATL_					0	0	0		nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A	nc|ENSG00000160305|Q14689-6|DIP2A	nc|ENSG00000160305|Q14689-6|DIP2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3613891601562	2	582.360973	1162.70739	0.052831	3.0767E-05	0.41661	0.00024262	0.46944	0.00027339	582.3611179631446	65.124	1.5027	65.124	64.424	65.927	0					137	54	4	0	0	0	0.0016102	3	16247	16194;16247;16297		88.364	41.088	1	3361600			53931	5458	30845	30846	66040;66041;66042	66041					0.13254839845239985
VPRPPSLLATL	11	Unmodified	_VPRPPSLLATL_					0	0	0		nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A	nc|ENSG00000160305|Q14689-6|DIP2A	nc|ENSG00000160305|Q14689-6|DIP2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.3614501953125	2	582.360973	1162.70739	0.037886	2.2063E-05	0.48914	0.00028486	0.52703	0.00030692	582.361164467218	65.156	1.4283	65.145	64.493	65.922	-0.011337					143	51	5	0	0	0	0.0094061	2	16234	16187;16234		70.929	33.854	1	3518400			53932	5458	30845	30846	66043;66044	66044					0.13254839845239985
VPRPPSLLATL	11	Unmodified	_VPRPPSLLATL_					0	0	0		nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A	nc|ENSG00000160305|Q14689-6|DIP2A	nc|ENSG00000160305|Q14689-6|DIP2A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	582.360973	1162.70739	0.060588	3.5284E-05	0.47426	0.00027619	0.53484	0.00031147	582.3611477440262	65.058	1.1814	65.147	64.55	65.732	0.088875	0.0081994	2.0286E-05	NaN	88.364	125	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3907900			53933	5458	30845	30846							0.13254839845239985
VPRPPSNPP	9	Unmodified	_VPRPPSNPP_					0	0	0		nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2;ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF	nc|ENSG00000056972|O43734-5|TRAF3IP2	nc|ENSG00000056972|O43734-5|TRAF3IP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.76690673828125	2	480.766709	959.518865	0.35133	0.00016891	0.87816	0.00042219	1.2295	0.0005911	480.7669970172528	29.344	1.7006	29.344	28.333	30.034	0					145	60	4	0	0	0	0.0079761	6	5205	5060;5110;5157;5205;5256;5315		82.529	34.781	1	1143700			53934	715	30846	30847	66045;66046;66047;66048;66049;66050	66048					0.03748606991609904
VPRPPSNPP	9	Unmodified	_VPRPPSNPP_					0	0	0		nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2;ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF	nc|ENSG00000056972|O43734-5|TRAF3IP2	nc|ENSG00000056972|O43734-5|TRAF3IP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7668762207031	2	480.766709	959.518865	0.24581	0.00011818	0.94615	0.00045488	1.192	0.00057306	480.7670407246205	29.238	1.9918	29.251	27.956	29.948	0.012266					147	69	3	0	0	0	0.0079761	6	5187	5050;5094;5138;5187;5238;5290		82.529	34.781	1	1233900			53935	715	30846	30847	66051;66052;66053;66054;66055;66056	66054					0.03748606991609904
VPRPPSNPP	9	Unmodified	_VPRPPSNPP_					0	0	0		nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2;ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF	nc|ENSG00000056972|O43734-5|TRAF3IP2	nc|ENSG00000056972|O43734-5|TRAF3IP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.766845703125	2	480.766709	959.518865	0.098817	4.7508E-05	1.0255	0.00049301	1.1243	0.00054052	480.76709111977397	29.313	1.8392	29.327	28.307	30.146	0.013474					148	64	4	0	0	0	0.0079761	5	5115	5059;5115;5167;5215;5260		82.529	34.781	1	1249800			53936	715	30846	30847	66057;66058;66059;66060;66061	66058					0.03748606991609904
VPRPRPRADL	10	Unmodified	_VPRPRPRADL_					0	0	0			REV__ENSG00000171219|ENST00000342711|CDC42BPG	REV__ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3427124023438	2	588.851638	1175.68872	0.35164	0.00020706	-0.50854	-0.00029945	-0.15689	-9.2387E-05	588.8510498348444	91.77	0.56885	91.77	91.527	92.096	0					54	37	2	0	0	0	0.38773	1	24381	24381		5.7319	0	1	133540	+		53937	17628	30847	30848	66062	66062					0.10790722994033786
VPRPRTEL	8	Unmodified	_VPRPRTEL_					0	0	0			REV__ENST00000412082.6_1_16:20935625-20935910:+|nuORF	REV__ENST00000412082.6_1_16:20935625-20935910:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.66845703125	2	484.287808	966.561064	0.21662	0.00010491	-0.19608	-9.4958E-05	0.02054	9.9472E-06	484.2877319147779	21.717	0.50921	21.717	21.431	21.94	0					44	18	3	0	0	0	0.34337	1	2865	2865		5.2307	0	1	254680	+		53938	20779	30848	30849	66063	66063					0.07644582399984756
VPRPTKSSF	9	Unmodified	_VPRPTKSSF_					0	0	0		ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;ENST00000401044.7_1_1:59134235-59156019:-|nuORF	ENSG00000162601|ENST00000472487|MYSM1	ENSG00000162601|ENST00000472487|MYSM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.78741455078125	2	509.787641	1017.56073	0.12415	6.3288E-05	-1.0525	-0.00053654	-0.92833	-0.00047325	509.7868200016216	23.45	0.98333	23.45	22.904	23.887	0					81	33	3	0	0	0	0.13296	1	3410	3410		33.445	7.1768	1	451060			53939	5585	30849	30850	66064	66064					0.052651626801548446
VPRPTKSSF	9	Unmodified	_VPRPTKSSF_					0	0	0		ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;ENST00000401044.7_1_1:59134235-59156019:-|nuORF	ENSG00000162601|ENST00000472487|MYSM1	ENSG00000162601|ENST00000472487|MYSM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7878723144531	2	509.787641	1017.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.445	1	23.358	22.858	23.858	-0.087608								0	0	0	0.062149	1	3453	3453		57.249	19.074	1				53940	5585	30849	30850	66065	66065					0.052651626801548446
VPRPTKSSF	9	Unmodified	_VPRPTKSSF_					0	0	0		ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;ENST00000401044.7_1_1:59134235-59156019:-|nuORF	ENSG00000162601|ENST00000472487|MYSM1	ENSG00000162601|ENST00000472487|MYSM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7876892089844	2	509.787641	1017.56073	0.29452	0.00015014	-0.057613	-2.937E-05	0.23691	0.00012077	509.7875103238549	23.566	0.64703	23.527	23.231	23.878	-0.038927					62	22	4	0	0	0	0.017549	2	3492	3445;3492		67.838	35.052	1	444670			53941	5585	30849	30850	66066;66067	66067					0.052651626801548446
VPRPVLRAL	9	Unmodified	_VPRPVLRAL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.83746337890625	2	510.837468	1019.66038	-0.0068649	-3.5069E-06	-0.25717	-0.00013137	-0.26403	-0.00013488	510.83743563767746	39.592	0.8643	39.592	39.268	40.132	0					104	31	5	0	0	0	0.00014409	2	8404	8357;8404		133.7	43.009	1	2475400			53942	1364	30850	30851	66068;66069	66069					0.15134025084751102
VPRPVLRAL	9	Unmodified	_VPRPVLRAL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.8374328613281	2	510.837468	1019.66038	0.18991	9.7015E-05	-0.41325	-0.0002111	-0.22333	-0.00011409	510.8373491151949	39.466	0.89692	39.559	39.226	40.123	0.09267					100	31	5	0	0	0	0.0011817	2	8315	8315;8367		120.45	46.028	1	2772200			53943	1364	30850	30851	66070;66071	66070					0.15134025084751102
VPRPVLRAL	9	Unmodified	_VPRPVLRAL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.8374328613281	2	510.837468	1019.66038	0.25602	0.00013078	-0.44718	-0.00022844	-0.19116	-9.7653E-05	510.83732754434544	39.415	1.0463	39.514	39.184	40.23	0.099403					100	37	5	0	0	0	0.0011817	2	8302	8302;8364		120.45	39.014	1	2618000			53944	1364	30850	30851	66072;66073	66072					0.15134025084751102
VPRPVLRALSF	11	Unmodified	_VPRPVLRALSF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.887939453125	2	627.88769	1253.76083	0.58259	0.0003658	-0.30023	-0.00018851	0.28236	0.00017729	627.8874628812741	55.713	0.5928	55.713	55.4	55.992	0					61	20	4	0	0	0	0.0024118	3	13315	13267;13315;13372		92.201	68.411	1	2474500			53945	1364	30851	30852	66074;66075;66076	66075					0.1440963734773959
VPRPVLRALSF	11	Unmodified	_VPRPVLRALSF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.9276123046875	3	418.927552	1253.76083	0.19993	8.3754E-05	-0.25618	-0.00010732	-0.056253	-2.3566E-05	418.92746576341676	55.743	0.85907	55.743	55.325	56.184	0					87	30	4	0	0	0	0.0014855	2	13322	13273;13322		90.104	55.024	1	7397600			53946	1364	30851	30852	66077;66078	66078					0.1440963734773959
VPRPVLRALSF	11	Unmodified	_VPRPVLRALSF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.8878784179688	2	627.88769	1253.76083	0.37193	0.00023353	-0.02323	-1.4586E-05	0.3487	0.00021894	627.8876302124894	55.639	0.56724	55.71	55.422	55.989	0.070885					67	20	5	0	0	0	0.00077113	3	13274	13274;13317;13367		128.58	109.32	1	2664200			53947	1364	30851	30852	66079;66080;66081	66079					0.1440963734773959
VPRPVLRALSF	11	Unmodified	_VPRPVLRALSF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.9276123046875	3	418.927552	1253.76083	0.42732	0.00017902	-0.28694	-0.00012021	0.14038	5.881E-05	418.9274180697096	55.819	0.97388	55.799	55.379	56.352	-0.019081					109	35	4	0	0	0	0.010584	2	13340	13295;13340		68.436	50.572	1	7168800			53948	1364	30851	30852	66082;66083	66083					0.1440963734773959
VPRPVLRALSF	11	Unmodified	_VPRPVLRALSF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.8880004882812	2	627.88769	1253.76083	0.55103	0.00034598	-0.1544	-9.6947E-05	0.39663	0.00024904	627.8876338803004	55.852	0.65117	55.833	55.508	56.159	-0.019081					57	23	3	0	0	0	0.00014719	3	13356	13313;13356;13404		128.58	108.16	1	2476400			53949	1364	30851	30852	66084;66085;66086	66085					0.1440963734773959
VPRPVLRALSF	11	Unmodified	_VPRPVLRALSF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	418.927552	1253.76083	0.3972	0.0001664	-0.46807	-0.00019609	-0.070868	-2.9689E-05	418.92737822954547	55.64	0.75248	55.71	55.324	56.077	0.070885	-0.040575	-0.00015748	NaN	90.104	84	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7522800			53950	1364	30851	30852							0.1440963734773959
VPRQCRAI	8	Unmodified	_VPRQCRAI_					0	0	0			REV__ENST00000572252.5_1_16:30392755-30393443:-|nuORF	REV__ENST00000572252.5_1_16:30392755-30393443:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2840881347656	2	471.768729	941.522904	0.37126	0.00017515	2.3477	0.0011076	2.7189	0.0012827	471.7697424755793	74.488	0.38974	74.488	74.313	74.703	0					16	13	2	0	0	0	0.34046	1	19117	19117		14.582	0	1	269850	+		53951	22421	30852	30853	66087	66087					0.04980373213675193
VPRQDSKGL	9	Unmodified	_VPRQDSKGL_					0	0	0		nc|ENSG00000074356|Q53F19-2|NCBP3;ENSG00000074356|ENST00000389005|NCBP3	nc|ENSG00000074356|Q53F19-2|NCBP3	nc|ENSG00000074356|Q53F19-2|NCBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.6715087890625	2	500.282723	998.550893	0.11957	5.9818E-05	0.35119	0.0001757	0.47076	0.00023551	500.28307700459555	15.686	0.37844	15.621	15.457	15.836	-0.064413					16	12	2	0	0	0	0.25843	1	1113	1113		5.7319	0	1	34763			53952	1019	30853	30854	66088	66088					0.051559746747557256
VPRQLVLS	8	Unmodified	_VPRQLVLS_					0	0	0		ENST00000427358.3_1_16:1876946-1877183:+|nuORF	ENST00000427358.3_1_16:1876946-1877183:+|nuORF	ENST00000427358.3_1_16:1876946-1877183:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2769775390625	2	456.287277	910.560001	0.30004	0.0001369	-0.20958	-9.5629E-05	0.090455	4.1274E-05	456.28712312873415	42.052	0.71561	42.143	41.865	42.581	0.091362					53	24	3	0	0	0	0.3671	1	9135	9135		23.148	0	1	1515000			53953	10431	30854	30855	66089	66089					0.10114368031076992
VPRQNVPVI	9	Unmodified	_VPRQNVPVI_					0	0	0		nc|ENSG00000151491|Q12929-2|EPS8;ENSG00000151491|ENST00000281172|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.3115539550781	2	511.311284	1020.60801	0.35736	0.00018272	0.21224	0.00010852	0.5696	0.00029124	511.3113614488184	40.19	1.4023	40.19	39.723	41.125	0					138	50	4	0	0	0	0.0014051	4	8527	8482;8527;8575;8625		117.6	67.666	1	6273900			53954	4966	30855	30856	66090;66091;66092;66093	66091					0.09853441951145214
VPRQNVPVI	9	Unmodified	_VPRQNVPVI_					0	0	0		nc|ENSG00000151491|Q12929-2|EPS8;ENSG00000151491|ENST00000281172|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.3114929199219	2	511.311284	1020.60801	0.49216	0.00025165	0.061607	3.15E-05	0.55377	0.00028315	511.3112851749953	40.056	1.1012	40.149	39.777	40.879	0.09267					118	39	4	0	0	0	0.00268	3	8556	8453;8505;8556		104.8	66.825	1	6743400			53955	4966	30855	30856	66094;66095;66096	66096					0.09853441951145214
VPRQNVPVI	9	Unmodified	_VPRQNVPVI_					0	0	0		nc|ENSG00000151491|Q12929-2|EPS8;ENSG00000151491|ENST00000281172|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	nc|ENSG00000151491|Q12929-2|EPS8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.3115539550781	2	511.311284	1020.60801	0.32381	0.00016557	0.21177	0.00010828	0.53558	0.00027385	511.3113566304581	40.005	1.6952	40.104	39.705	41.4	0.099407					149	61	5	0	0	0	0.0017972	4	8470	8422;8470;8519;8562		112.59	66.572	1	7111000			53956	4966	30855	30856	66097;66098;66099;66100	66098					0.09853441951145214
VPRQRGGL	8	Unmodified	_VPRQRGGL_					0	0	0		ENST00000355112.7_1_15:91354554-91358468:+|nuORF	ENST00000355112.7_1_15:91354554-91358468:+|nuORF	ENST00000355112.7_1_15:91354554-91358468:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7676086425781	2	441.767043	881.519533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.8	1	41.8	41.3	42.3	0								0	0	0	0.31676	1	9042	9042		26.341	0	1				53957	9606	30856	30857	66101	66101					0.07403446431339944
VPRRAATL	8	Unmodified	_VPRRAATL_					0	0	0			REV__ENST00000465508.5_1_1:6695257-6695521:-|nuORF	REV__ENST00000465508.5_1_1:6695257-6695521:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.2770690917969	2	442.277244	882.539935	-0.050673	-2.2411E-05	0.23614	0.00010444	0.18547	8.203E-05	442.27725943848077	18.884	0.92889	18.767	18.531	19.46	-0.11739					60	32	3	0	0	0	0.27124	1	2054	2054		34.102	0	1	253550	+		53958	21275	30857	30858	66102	66102					0.09396617091124426
VPRRAATL	8	Unmodified	_VPRRAATL_					0	0	0			REV__ENST00000465508.5_1_1:6695257-6695521:-|nuORF	REV__ENST00000465508.5_1_1:6695257-6695521:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	442.277244	882.539935	0.0074794	3.308E-06	0.22131	9.7881E-05	0.22879	0.00010119	442.2772483235387	18.738	0.84681	18.738	18.479	19.325	0	-0.024378	-2.4185E-05	NaN	34.102	59	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262330	+		53959	21275	30857	30858							0.09396617091124426
VPRREGLPR	9	Unmodified	_VPRREGLPR_					0	0	0		ENST00000369769.3_1_1:111216478-111216679:-|nuORF	ENST00000369769.3_1_1:111216478-111216679:-|nuORF	ENST00000369769.3_1_1:111216478-111216679:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.261474609375	2	540.325257	1078.63596	0.61146	0.00033039	-3.2251	-0.0017426	-2.6136	-0.0014122	540.3235317973948	20.857	0.43001	20.857	20.622	21.052	0					21	14	2	0	0	0	0.2451	1	2636	2636		10.824	0	1	75637			53960	9782	30858	30859	66103	66103					0.0997876493122476
VPRRRRPDPRH	11	Unmodified	_VPRRRRPDPRH_					0	0	0			REV__ENST00000315422.8_1_11:64577237-64577864:-|nuORF	REV__ENST00000315422.8_1_11:64577237-64577864:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2834777832031	3	481.283503	1440.82868	0.16098	7.7477E-05	-0.084044	-4.0449E-05	0.076937	3.7028E-05	481.28337324082213	91.743	1.505	91.743	91.163	92.668	0					460	110	5	0	0	0	0.47633	1	24261	24261		1.2148	1.2148	1	2919000	+		53961	19930	30859	30860	66104	66104					0.12589900051102632
VPRRRRPDPRH	11	Unmodified	_VPRRRRPDPRH_					0	0	0			REV__ENST00000315422.8_1_11:64577237-64577864:-|nuORF	REV__ENST00000315422.8_1_11:64577237-64577864:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2834777832031	3	481.283503	1440.82868	0.24196	0.00011645	-0.091805	-4.4184E-05	0.15015	7.2267E-05	481.28335677385866	91.829	1.6064	91.919	91.143	92.749	0.090668					418	111	4	0	0	0	0.47633	1	24245	24245		1.2148	0.10508	1	3408400	+		53962	19930	30859	30860	66105	66105					0.12589900051102632
VPRRRRPDPRH	11	Unmodified	_VPRRRRPDPRH_					0	0	0			REV__ENST00000315422.8_1_11:64577237-64577864:-|nuORF	REV__ENST00000315422.8_1_11:64577237-64577864:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.28363037109375	3	481.283503	1440.82868	0.18947	9.119E-05	0.082259	3.959E-05	0.27173	0.00013078	481.2835338027953	93.447	3.2005	93.533	92.695	95.896	0.086678					939	275	5	0	0	0	0.47633	1	25266	25266		1.2148	0.10508	1	7091700	+		53963	19930	30859	30860	66106	66106					0.12589900051102632
VPRSASVLL	9	Unmodified	_VPRSASVLL_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	nc|ENSG00000166557|Q9Y3Q3-2|TMED3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2926025390625	2	471.292559	940.570566	0.035372	1.6671E-05	0.24743	0.00011661	0.28281	0.00013328	471.2926112688346	42.852	1.2503	42.852	42.543	43.793	0					109	45	4	0	0	0	0.015924	2	9366	9321;9366		70.332	12.61	1	6480700			53964	6094;12819	30860	30861	66107;66108	66108					0.09790350685523208
VPRSASVLL	9	Unmodified	_VPRSASVLL_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	nc|ENSG00000166557|Q9Y3Q3-2|TMED3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.29254150390625	2	471.292559	940.570566	0.043153	2.0338E-05	0.20119	9.4818E-05	0.24434	0.00011516	471.29258503714385	42.735	1.2578	42.82	42.434	43.691	0.085197					107	45	4	0	0	0	0.0098873	3	9316	9274;9316;9362		79.596	33.897	1	6822100			53965	6094;12819	30860	30861	66109;66110;66111	66110					0.09790350685523208
VPRSASVLL	9	Unmodified	_VPRSASVLL_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	nc|ENSG00000166557|Q9Y3Q3-2|TMED3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2925720214844	2	471.292559	940.570566	0.055859	2.6326E-05	0.19802	9.3323E-05	0.25387	0.00011965	471.2925812255769	42.653	1.198	42.745	42.441	43.639	0.091362					115	43	4	0	0	0	0.0098873	3	9289	9245;9289;9339		79.596	29.663	1	6083500			53966	6094;12819	30860	30861	66112;66113;66114	66113					0.09790350685523208
VPRSASVLLL	10	Unmodified	_VPRSASVLLL_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	nc|ENSG00000166557|Q9Y3Q3-2|TMED3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.8345947265625	2	527.834591	1053.65463	1.123	0.00059274	-0.65627	-0.0003464	0.46671	0.00024634	527.8341306597348	56.263	0.57154	56.244	56.021	56.592	-0.019077					36	20	2	0	0	0	0.18128	1	13489	13489		34.932	2.6266	1	2044400			53967	6094;12819	30861	30862	66115	66115					0.12994881782424272
VPRSGKPAEL	10	Unmodified	_VPRSGKPAEL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53259774-53260053:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3064575195312	2	527.306198	1052.59784	0.51207	0.00027002	0.12114	6.3876E-05	0.6332	0.00033389	527.306077397242	20.138	0.57884	20.138	20.016	20.594	0					37	21	2	0	0	0	0.24437	1	2492	2492		27.223	2.2323	1	218960			53968	5758	30862	30863	66116	66116					0.07364834225904815
VPRSGKPAEL	10	Unmodified	_VPRSGKPAEL_					0	0	0		ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53259774-53260053:-|nuORF	ENSG00000163931|ENST00000462138|TKT	ENSG00000163931|ENST00000462138|TKT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.306640625	2	527.306198	1052.59784	0.64952	0.00034249	0.0018725	9.8736E-07	0.65139	0.00034348	527.3060967827868	20.449	0.62491	20.339	20.104	20.729	-0.11003					39	22	2	0	0	0	0.24437	1	2564	2564		27.223	6.8087	1	249280			53969	5758	30862	30863	66117	66117					0.07364834225904815
VPRSGTTL	8	Unmodified	_VPRSGTTL_					0	0	0		ENSG00000128294|ENST00000338754|TPST2;ENSG00000169902|ENST00000304842|TPST1	ENSG00000128294|ENST00000338754|TPST2	ENSG00000128294|ENST00000338754|TPST2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.7399597167969	2	415.74016	829.465767	0.024658	1.0251E-05	-1.3431	-0.00055839	-1.3185	-0.00054814	415.73970742319295	21.309	0.99077	21.309	21.026	22.017	0					75	35	3	0	0	0	0.35947	1	2875	2875		24.021	1.2843	1	295410			53970	3359	30863	30864	66118	66118					0.044212292089468974
VPRSKILTV	9	Unmodified	_VPRSKILTV_					0	0	0		nc|ENSG00000261371|P16284-5|PECAM1;nc|ENSG00000261371|P16284-3|PECAM1;nc|ENSG00000261371|P16284-4|PECAM1;nc|ENSG00000261371|P16284-2|PECAM1;nc|ENSG00000261371|P16284-6|PECAM1;ENSG00000261371|ENST00000563924|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	nc|ENSG00000261371|P16284-5|PECAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.8294982910156	2	506.829309	1011.64407	0.3223	0.00016335	-0.30808	-0.00015614	0.01422	7.207E-06	506.8290425144019	31.804	0.47028	31.845	31.62	32.09	0.040989					26	16	2	0	0	0	0.086462	1	5980	5980		40.239	7.4535	1	464940			53971	8659	30864	30865	66119	66119					0.13870899127994107
VPRSKPSI	8	Unmodified	_VPRSKPSI_					0	0	0			REV__ENSG00000102313|ENST00000218436|ITIH6	REV__ENSG00000102313|ENST00000218436|ITIH6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.28399658203125	2	442.271627	882.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.869	1	42.869	42.369	43.369	0								0	0	0	0.32762	1	9368	9368		24.674	5.2349	1		+		53972	14318	30865	30866	66120	66120					0.08273794997001005
VPRSKPSI	8	Unmodified	_VPRSKPSI_					0	0	0			REV__ENSG00000102313|ENST00000218436|ITIH6	REV__ENSG00000102313|ENST00000218436|ITIH6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.28399658203125	2	442.271627	882.528701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.329	1	43.329	42.829	43.829	0								0	0	0	0.35014	1	9509	9509		14.582	0	1		+		53973	14318	30865	30866	66121	66121					0.08273794997001005
VPRSPDWKRSP	11	Unmodified	_VPRSPDWKRSP_					0	0	0		ENSG00000226763|ENST00000417606|SRRM5	ENSG00000226763|ENST00000417606|SRRM5	ENSG00000226763|ENST00000417606|SRRM5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.77496337890625	3	442.242199	1323.70477	-0.10756	-4.7567E-05	1.3487	0.00059647	1.2412	0.0005489	442.24276114344445	14.921	0.55681	14.857	14.456	15.013	-0.064414					26	19	2	0	0	0	0.33122	1	913	913		7.0371	5.7074	1	63535			53974	8452	30866	30867	66122	66122					0.05586384440266556
VPRSPFKIKVL	11	Unmodified	_VPRSPFKIKVL_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.61126708984375	3	428.611452	1282.81253	-0.25564	-0.00010957	-0.37019	-0.00015867	-0.62583	-0.00026824	428.61131128177675	46.276	1.7734	46.276	45.501	47.274	0					169	63	5	0	0	0	2.1016E-05	4	10385	10332;10385;10435;10489		113.93	84.64	1	11569000			53975	3377	30867	30868	66123;66124;66125;66126	66124					0.18243381041634166
VPRSPFKIKVL	11	Unmodified	_VPRSPFKIKVL_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.4130249023438	2	642.41354	1282.81253	0.18459	0.00011858	-0.063031	-4.0492E-05	0.12156	7.8092E-05	642.4133949841946	46.279	0.45423	46.279	46.003	46.458	0					36	16	3	0	0	0	0.2971	1	10422	10422		27.088	7.7264	1	775410			53976	3377	30867	30868	66127	66127					0.18243381041634166
VPRSPFKIKVL	11	Unmodified	_VPRSPFKIKVL_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.6111145019531	3	428.611452	1282.81253	-0.27385	-0.00011737	-0.34335	-0.00014716	-0.61719	-0.00026454	428.61133314287014	46.127	1.2025	46.187	45.734	46.936	0.059834					148	43	5	0	0	0	1.8383E-05	4	10386	10290;10335;10386;10447		116.41	79.159	1	12555000			53977	3377	30867	30868	66128;66129;66130;66131	66130					0.18243381041634166
VPRSPFKIKVL	11	Unmodified	_VPRSPFKIKVL_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.9158325195312	2	642.41354	1282.81253	0.2214	0.00014223	0.11224	7.2104E-05	0.33364	0.00021434	642.4133256458736	46.127	0.52365	46.187	45.9	46.424	0.059837					41	18	3	0	0	0	0.078494	1	10347	10347		46.475	27.113	1	680800			53978	3377	30867	30868	66132	66132					0.18243381041634166
VPRSPFKIKVL	11	Unmodified	_VPRSPFKIKVL_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.6112060546875	3	428.611452	1282.81253	-0.067955	-2.9126E-05	-0.61978	-0.00026564	-0.68773	-0.00029477	428.6112120908539	46.168	1.2876	46.233	45.84	47.128	0.065048					146	45	5	0	0	0	1.1615E-05	4	10357	10313;10357;10408;10461		122.78	87.701	1	12344000			53979	3377	30867	30868	66133;66134;66135;66136	66134					0.18243381041634166
VPRSPFKIKVL	11	Unmodified	_VPRSPFKIKVL_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.915771484375	2	642.41354	1282.81253	0.45993	0.00029547	-0.4592	-0.00029499	0.00073625	4.7298E-07	642.4129993820903	46.172	0.60207	46.237	45.925	46.527	0.065048					41	21	3	0	0	0	0.13747	1	10355	10355		50.13	30.768	1	624690			53980	3377	30867	30868	66137	66137					0.18243381041634166
VPRSPFKVKVL	11	Unmodified	_VPRSPFKVKVL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.9394226074219	3	423.939569	1268.79688	-0.27169	-0.00011518	-0.034858	-1.4778E-05	-0.30654	-0.00012996	423.9394936377126	42.267	0.91081	42.267	41.875	42.786	0					99	32	4	0	0	0	0.0079184	3	9177	9127;9177;9224		74.077	55.737	1	3382500			53981	7913	30868	30869	66138;66139;66140	66139					0.17323094524590488
VPRSPFKVKVL	11	Unmodified	_VPRSPFKVKVL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.9395751953125	3	423.939569	1268.79688	0.034336	1.4556E-05	-0.12804	-5.4281E-05	-0.093703	-3.9724E-05	423.9394793262923	41.998	0.92838	42.088	41.806	42.735	0.089466					89	33	4	0	0	0	0.0033936	3	9113	9066;9113;9155		83.652	56.523	1	3082000			53982	7913	30868	30869	66141;66142;66143	66142					0.17323094524590488
VPRSPFKVKVL	11	Unmodified	_VPRSPFKVKVL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.93951416015625	3	423.939569	1268.79688	0.17804	7.5477E-05	-0.27702	-0.00011744	-0.098979	-4.1961E-05	423.93942155895195	41.964	0.76978	42.06	41.789	42.559	0.096291					83	26	4	0	0	0	0.0033936	2	9096	9049;9096		83.652	65.312	1	2786800			53983	7913	30868	30869	66144;66145	66145					0.17323094524590488
VPRSPRGSGRS	11	Unmodified	_VPRSPRGSGRS_					0	0	0		ENSG00000186994|ENST00000330915|KANK3;nc|ENSG00000186994|Q6NY19-1|KANK3	ENSG00000186994|ENST00000330915|KANK3	ENSG00000186994|ENST00000330915|KANK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3207397460938	2	578.320703	1154.62685	0.2841	0.0001643	-0.57135	-0.00033043	-0.28725	-0.00016612	578.3200919467528	80.523	1.7605	80.496	79.228	80.989	-0.026825					91	66	2	0	0	0	0.44828	1	20880	20880		4.897	0	1	310290			53984	7658	30869	30870	66146	66146					0.05572371574908175
VPRSSNVL	8	Unmodified	_VPRSSNVL_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.25335693359375	2	436.253434	870.492316	-0.15432	-6.7322E-05	0.41528	0.00018117	0.26096	0.00011384	436.2535047864391	26.089	1.211	26.05	25.813	27.024	-0.038671					84	42	3	0	0	0	0.29394	1	4245	4245		36.127	10.728	1	632200			53985	5159	30870	30871	66147	66147					0.051889181002820806
VPRSSNVL	8	Unmodified	_VPRSSNVL_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.25347900390625	2	436.253434	870.492316	-0.034428	-1.5019E-05	0.20706	9.0332E-05	0.17264	7.5313E-05	436.25342073358553	26.11	1.1704	26.088	25.833	27.003	-0.022238					82	41	3	0	0	0	0.28088	1	4296	4296		39.957	0	1	562420			53986	5159	30870	30871	66148	66148					0.051889181002820806
VPRSSSMVL	9	Oxidation (M)	_VPRSSSM(Oxidation (M))VL_		VPRSSSM(1)VL		VPRSSSM(86)VL	0	0	1		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2657775878906	2	496.265684	990.516816	0.30609	0.0001519	0.082883	4.1132E-05	0.38898	0.00019304	496.26568620125477	27.191	0.51248	27.191	26.841	27.354	0					58	17	5	0	0	0	0.0054984	1	4592	4592		86.332	50.288	1	1561600			53987	3981	30871	30872	66149	66149		498			0.021178101915097614
VPRSSSMVL	9	Oxidation (M)	_VPRSSSM(Oxidation (M))VL_		VPRSSSM(1)VL		VPRSSSM(62)VL	0	0	1		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2659606933594	2	496.265684	990.516816	0.16642	8.2586E-05	0.25926	0.00012866	0.42568	0.00021125	496.26573554397174	27.542	0.92378	27.542	27.354	28.277	0					75	31	3	0	0	0	0.026579	3	4680	4635;4680;4724		61.602	25.558	1	1555900			53988	3981	30871	30872	66150;66151;66152	66151		498			0.021178101915097614
VPRSSSMVL	9	Oxidation (M)	_VPRSSSM(Oxidation (M))VL_		VPRSSSM(1)VL		VPRSSSM(65)VL	0	0	1		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.26580810546875	2	496.265684	990.516816	0.25807	0.00012807	0.25351	0.00012581	0.51158	0.00025388	496.2657158181633	27.179	0.52782	27.157	26.763	27.291	-0.021412					61	18	5	0	0	0	0.01909	2	4585	4544;4585		65.474	29.347	1	1510400			53989	3981	30871	30872	66153;66154	66154		498			0.021178101915097614
VPRSSSMVL	9	Oxidation (M)	_VPRSSSM(Oxidation (M))VL_		VPRSSSM(1)VL		VPRSSSM(64)VL	0	0	1		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2659912109375	2	496.265684	990.516816	0.121	6.005E-05	0.23529	0.00011677	0.35629	0.00017682	496.2657528342689	27.529	0.88465	27.508	27.291	28.176	-0.021412					76	30	3	0	0	0	0.020233	3	4678	4636;4678;4726		63.961	27.916	1	1671500			53990	3981	30871	30872	66155;66156;66157	66156		498			0.021178101915097614
VPRSSSMVL	9	Oxidation (M)	_VPRSSSM(Oxidation (M))VL_		VPRSSSM(1)VL		VPRSSSM(70)VL	0	0	1		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.26580810546875	2	496.265684	990.516816	0.2947	0.00014625	0.24105	0.00011963	0.53575	0.00026588	496.265700404641	27.141	0.43893	27.129	26.879	27.318	-0.011562					49	15	5	0	0	0	0.015924	2	4587	4543;4587		70.332	34.288	1	1529400			53991	3981	30871	30872	66158;66159	66159		498			0.021178101915097614
VPRSSSMVL	9	Oxidation (M)	_VPRSSSM(Oxidation (M))VL_		VPRSSSM(1)VL		VPRSSSM(58)VL	0	0	1		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2659606933594	2	496.265684	990.516816	0.060789	3.0167E-05	0.38977	0.00019343	0.45056	0.0002236	496.26577652863006	27.543	0.91326	27.532	27.29	28.203	-0.011562					75	31	4	0	0	0	0.037019	2	4681	4635;4681		57.722	19.748	1	1691100			53992	3981	30871	30872	66160;66161	66161		498			0.021178101915097614
VPRTAENFRAL	11	Unmodified	_VPRTAENFRAL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	425.23883056640625	3	425.238566	1272.69387	0.057296	2.4364E-05	-0.046671	-1.9846E-05	0.010625	4.5181E-06	425.2386237419581	36.559	0.78603	36.559	36.307	37.093	0					65	27	4	0	0	0	0.20836	1	7429	7429		57.885	47.085	1	962320			53993	5064	30872	30873	66162	66162					0.06842982065995784
VPRTAENFRAL	11	Unmodified	_VPRTAENFRAL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.2386474609375	3	425.238566	1272.69387	0.049482	2.1042E-05	-0.21374	-9.089E-05	-0.16426	-6.9848E-05	425.2385096178312	36.422	0.71545	36.505	36.259	36.975	0.082359					70	25	4	0	0	0	0.021361	1	7399	7399		61.523	48.667	1	912140			53994	5064	30872	30873	66163	66163					0.06842982065995784
VPRTAENFRAL	11	Unmodified	_VPRTAENFRAL_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.23858642578125	3	425.238566	1272.69387	0.40161	0.00017078	-0.38036	-0.00016174	0.021255	9.0382E-06	425.23838355493996	36.445	0.74817	36.531	36.196	36.944	0.08625					63	26	4	0	0	0	0.18118	1	7380	7380		64.86	48.586	1	1109400			53995	5064	30872	30873	66164	66164					0.06842982065995784
VPRTERPALSL	11	Unmodified	_VPRTERPALSL_					0	0	0		ENSG00000099991|ENST00000263119|CABIN1;nc|ENSG00000099991|Q9Y6J0-2|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.76080322265625	3	413.5787	1237.71427	0.25397	0.00010504	2.1185	0.00087617	2.3725	0.0009812	413.579486477792	37.373	0.37216	37.466	37.363	37.735	0.093018					22	13	2	0	0	0	0.33064	1	7713	7713		2.8433	0.75728	1	122020			53996	1509	30873	30874	66165	66165					0.10492152725805681
VPRTFKEI	8	Unmodified	_VPRTFKEI_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2928466796875	2	495.292559	988.570566	0.40481	0.0002005	0.19281	9.5495E-05	0.59762	0.000296	495.2925675223055	30.706	0.56016	30.706	30.473	31.033	0					44	19	3	0	0	0	0.16257	1	5660	5660		49.554	15.452	1	389270			53997	4098	30874	30875	66166	66166					0.07582350685515848
VPRTFKEI	8	Unmodified	_VPRTFKEI_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.29278564453125	2	495.292559	988.570566	0.36099	0.0001788	0.33117	0.00016403	0.69216	0.00034282	495.29262832885763	30.723	0.51452	30.751	30.523	31.037	0.027948					42	17	3	0	0	0	0.22007	1	5657	5657		39.95	9.3132	1	368400			53998	4098	30874	30875	66167	66167					0.07582350685515848
VPRTFKEI	8	Unmodified	_VPRTFKEI_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2928161621094	2	495.292559	988.570566	0.17005	8.4225E-05	0.58567	0.00029008	0.75572	0.0003743	495.292719524708	30.702	0.52315	30.73	30.505	31.029	0.027157					44	18	4	0	0	0	0.18459	1	5628	5628		45.7	9.5726	1	456120			53999	4098	30874	30875	66168	66168					0.07582350685515848
VPRTSTWLG	9	Unmodified	_VPRTSTWLG_					0	0	0			REV__ENST00000610008.1_1_2:75060848-75060947:-|nuORF	REV__ENST00000610008.1_1_2:75060848-75060947:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.66937255859375	2	508.779816	1015.54508	0.21343	0.00010859	2.9644	0.0015082	3.1779	0.0016168	508.78104791241583	18.055	0.49816	18.055	17.771	18.269	0					23	16	2	0	0	0	0.25879	1	1856	1856		4.756	0	1	27293	+		54000	22676	30875	30876	66169	66169					0.03792876163095116
VPRVGLGL	8	Unmodified	_VPRVGLGL_					0	0	0		ENSG00000146859|ENST00000275767|TMEM140	ENSG00000146859|ENST00000275767|TMEM140	ENSG00000146859|ENST00000275767|TMEM140	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.7634582519531	2	405.763438	809.512323	0.31125	0.0001263	0.14733	5.9783E-05	0.45859	0.00018608	405.76340471213143	47.989	0.86032	48.036	47.803	48.663	0.047523					65	31	3	0	0	0	0.065797	1	10954	10954		70.716	17.14	1	4998800			54001	4734	30876	30877	66170	66170					0.09994713830894852
VPRYSRPAQL	10	Unmodified	_VPRYSRPAQL_					0	0	0		ENST00000425974.5_1_2:13144018-13147099:-|nuORF	ENST00000425974.5_1_2:13144018-13147099:-|nuORF	ENST00000425974.5_1_2:13144018-13147099:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.83837890625	2	593.838197	1185.66184	0.19532	0.00011599	0.2724	0.00016176	0.46772	0.00027775	593.8383669362778	31.261	0.74993	31.303	30.793	31.543	0.042366					64	26	3	0	0	0	0.37133	1	5778	5778		8.7454	0	1	531030			54002	10413	30877	30878	66171	66171					0.07643614382845954
VPRYSRPAQL	10	Unmodified	_VPRYSRPAQL_					0	0	0		ENST00000425974.5_1_2:13144018-13147099:-|nuORF	ENST00000425974.5_1_2:13144018-13147099:-|nuORF	ENST00000425974.5_1_2:13144018-13147099:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.838134765625	2	593.838197	1185.66184	0.32659	0.00019394	0.088122	5.233E-05	0.41472	0.00024627	593.838289662303	31.194	0.75999	31.235	30.747	31.507	0.040991					60	27	4	0	0	0	0.33104	1	5769	5769		16.149	0	1	514920			54003	10413	30877	30878	66172	66172					0.07643614382845954
VPSASPPSL	9	Unmodified	_VPSASPPSL_					0	0	0			REV__nc|ENSG00000005238|Q7L5A3-3|ATOSB	REV__nc|ENSG00000005238|Q7L5A3-3|ATOSB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.2659912109375	2	427.734543	853.454533	-0.175	-7.4854E-05	-0.32025	-0.00013698	-0.49525	-0.00021184	427.7344965903565	42.769	0.41027	42.854	42.648	43.058	0.085197					21	14	2	0	0	0	0.12846	1	9340	9340		36.044	0	1	123370	+		54004	13342	30878	30879	66173	66173					0.021944071148027433
VPSGTTGLFL	10	Unmodified	_VPSGTTGLFL_					0	0	0			REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1	REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.69012451171875	2	496.276575	990.538597	0.19403	9.6294E-05	2.2699	0.0011265	2.464	0.0012228	496.2777385409771	60.363	0.15913	60.363	60.228	60.387	0					7	5	2	0	0	0	0.30079	1	14746	14746		20.454	3.3671	1	155240	+		54005	13723	30879	30880	66174	66174					0.04294938211717181
VPSKEKPK	8	Unmodified	_VPSKEKPK_					0	0	0			REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF	REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7936096191406	2	456.779285	911.544017	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.469	1	35.545	35.045	36.045	0.075306								0	0	0	0.26621	1	7106	7106		34.102	5.6156	1		+		54006	16736	30880	30881	66175	66175					0.08470661794183343
VPSKFFMK	8	Unmodified	_VPSKFFMK_					0	0	0			REV__ENSG00000215277|ENST00000430154|RNF212B	REV__ENSG00000215277|ENST00000430154|RNF212B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.6740417480469	2	492.272781	982.531009	0.32099	0.00015801	-1.1776	-0.0005797	-0.85662	-0.00042169	492.2723889318058	16.901	0.53925	16.901	16.779	17.318	0					22	18	2	0	0	0	0.34046	1	1575	1575		14.582	2.0501	1	37118	+		54007	19077	30881	30882	66176	66176					0.03904507410447877
VPSKHPLF	8	Unmodified	_VPSKHPLF_					0	0	0		nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.7687683105469	2	462.76872	923.522887	0.25919	0.00011995	-0.22853	-0.00010576	0.030658	1.4188E-05	462.7687340336857	35.761	0.99852	35.847	35.597	36.595	0.08625					74	35	4	0	0	0	0.11736	1	7178	7178		57.471	6.6163	1	1618700			54008	7296	30882	30883	66177	66177					0.05806696485319662
VPSKPPMSL	9	Oxidation (M)	_VPSKPPM(Oxidation (M))SL_		VPSKPPM(1)SL		VPSKPPM(62)SL	0	0	1		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2654724121094	2	486.265153	970.515753	0.35813	0.00017415	0.36901	0.00017944	0.72714	0.00035358	486.2650701727753	32.003	0.55683	32.003	31.694	32.251	0					31	19	2	0	0	0	0.026579	2	6092	6040;6092		61.602	10.747	1	813840			54009	5151	30883	30884	66178;66179	66179		630			0.029315958226106886
VPSKPPMSL	9	Oxidation (M)	_VPSKPPM(Oxidation (M))SL_		VPSKPPM(1)SL		VPSKPPM(53)SL	0	0	1		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2651672363281	2	486.265153	970.515753	0.50892	0.00024747	-0.24383	-0.00011856	0.26509	0.0001289	486.26499063853896	32.535	0.58622	32.535	32.225	32.811	0					38	20	2	0	0	0	0.048637	2	6140	6140;6187		53.404	11.309	1	821240			54010	5151	30883	30884	66180;66181	66180		630			0.029315958226106886
VPSKPPMSL	9	Oxidation (M)	_VPSKPPM(Oxidation (M))SL_		VPSKPPM(1)SL		VPSKPPM(42)SL	0	0	1		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.26531982421875	2	486.265153	970.515753	0.43087	0.00020952	0.3726	0.00018118	0.80348	0.0003907	486.2650784860567	31.937	0.59609	31.98	31.624	32.22	0.042364					32	20	2	0	0	0	0.07944	1	6068	6068		41.956	7.7682	1	997870			54011	5151	30883	30884	66182	66182		630			0.029315958226106886
VPSKPPMSL	9	Oxidation (M)	_VPSKPPM(Oxidation (M))SL_		VPSKPPM(1)SL		VPSKPPM(54)SL	0	0	1		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2653503417969	2	486.265153	970.515753	0.5488	0.00026686	-0.20377	-9.9084E-05	0.34503	0.00016778	486.26503509360623	32.385	0.60761	32.441	32.206	32.814	0.055313					48	21	3	0	0	0	0.047483	2	6168	6118;6168		53.833	13.51	1	877290			54012	5151	30883	30884	66183;66184	66184		630			0.029315958226106886
VPSKPPMSL	9	Oxidation (M)	_VPSKPPM(Oxidation (M))SL_		VPSKPPM(1)SL		VPSKPPM(53)SL	0	0	1		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.26519775390625	2	486.265153	970.515753	0.33083	0.00016087	0.456	0.00022174	0.78684	0.00038261	486.2650600791393	31.977	0.61439	32.018	31.62	32.234	0.040989					40	21	3	0	0	0	0.048637	2	6077	6025;6077		53.404	11.309	1	1056200			54013	5151	30883	30884	66185;66186	66186		630			0.029315958226106886
VPSKPPMSL	9	Oxidation (M)	_VPSKPPM(Oxidation (M))SL_		VPSKPPM(1)SL		VPSKPPM(53)SL	0	0	1		ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	ENSG00000154945|ENST00000285243|ANKRD40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.26531982421875	2	486.265153	970.515753	0.3259	0.00015847	-0.014728	-7.1616E-06	0.31117	0.00015131	486.2651098966163	32.423	0.56854	32.477	32.223	32.791	0.054375					48	20	3	0	0	0	0.048637	2	6130	6130;6179		53.404	13.345	1	809170			54014	5151	30883	30884	66187;66188	66187		630			0.029315958226106886
VPSLAAKAV	9	Unmodified	_VPSLAAKAV_					0	0	0			REV__ENSG00000105613|ENST00000251472|MAST1	REV__ENSG00000105613|ENST00000251472|MAST1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2502136230469	2	428.268553	854.522553	-0.11065	-4.7387E-05	-0.85053	-0.00036426	-0.96118	-0.00041164	428.2690357410703	33.024	0.13422	33.078	32.985	33.119	0.054371					6	4	2	0	0	0	0.20881	1	6351	6351		11.495	2.1116	1	181490	+		54015	14467	30884	30885	66189	66189					0.0894727676546836
VPSLLRVL	8	Unmodified	_VPSLLRVL_					0	0	0		ENST00000549307.5_1_12:58109828-58113249:+|nuORF	ENST00000549307.5_1_12:58109828-58113249:+|nuORF	ENST00000549307.5_1_12:58109828-58113249:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.2606201171875	2	448.80002	895.585488	0.30581	0.00013725	-0.1462	-6.5616E-05	0.15961	7.1633E-05	448.79984167994326	62.372	0.50867	62.364	62.167	62.675	-0.0085526					39	18	3	0	0	0	0.33245	1	15452	15452		13.508	4.9146	1	304430			54016	11784	30885	30886	66190	66190					0.1335184255351578
VPSLTARAL	9	Unmodified	_VPSLTARAL_					0	0	0		ENST00000216181.9_1_22:36677793-36678213:-|nuORF	ENST00000216181.9_1_22:36677793-36678213:-|nuORF	ENST00000216181.9_1_22:36677793-36678213:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.2845764160156	2	464.284734	926.554916	0.10685	4.9609E-05	-0.068722	-3.1907E-05	0.038128	1.7702E-05	464.2845476209385	35.761	0.76274	35.761	35.52	36.282	0					59	27	4	0	0	0	0.18803	1	7214	7214		25.399	0.72543	1	1580000			54017	8814	30886	30887	66191	66191					0.08870064168456793
VPSLWVIL	8	Unmodified	_VPSLWVIL_					0	0	0		ENST00000465567.1_1_17:15930614-15930833:+|nuORF	ENST00000465567.1_1_17:15930614-15930833:+|nuORF	ENST00000465567.1_1_17:15930614-15930833:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.8008117675781	2	463.789121	925.56369	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.903	1	35.985	35.485	36.485	0.082355								0	0	0	0.31676	1	7238	7238		26.341	0.073138	1				54018	10800	30887	30888	66192	66192					0.0979303780494547
VPSMSHWL	8	Unmodified	_VPSMSHWL_					0	0	0		ENSG00000099994|ENST00000358321|SUSD2;ENST00000463101.1_1_22:24579934-24582448:+|nuORF	ENSG00000099994|ENST00000358321|SUSD2	ENSG00000099994|ENST00000358321|SUSD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7821044921875	2	478.736563	955.458573	0.27891	0.00013352	2.8219	0.0013509	3.1008	0.0014845	478.73770595094663	36.183	0.32441	36.183	35.932	36.256	0					16	11	2	0	0	0	0.34185	1	7255	7255		10.183	3.8293	1	106940			54019	1511	30888	30889	66193	66193					-0.02093826663121945
VPSMSHWL	8	Unmodified	_VPSMSHWL_					0	0	0		ENSG00000099994|ENST00000358321|SUSD2;ENST00000463101.1_1_22:24579934-24582448:+|nuORF	ENSG00000099994|ENST00000358321|SUSD2	ENSG00000099994|ENST00000358321|SUSD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	478.736563	955.458573	0.4826	0.00023104	2.7479	0.0013155	3.2305	0.0015465	478.73805393707124	36.036	0.18702	36.122	36.009	36.196	0.08625	-0.030449	-6.1174E-05	NaN	10.183	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117770			54020	1511	30888	30889							-0.02093826663121945
VPSNRLAA	8	Unmodified	_VPSNRLAA_					0	0	0			REV__ENSG00000136950|ENST00000353214|ARPC5L	REV__ENSG00000136950|ENST00000353214|ARPC5L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.9150085449219	2	414.240327	826.466101	0.26978	0.00011175	-0.41775	-0.00017305	-0.14797	-6.1294E-05	414.2401147645067	32.391	0.43459	32.445	32.223	32.658	0.054371					27	15	3	0	0	0	0.34185	1	6219	6219		10.183	0	1	82249	+		54021	15840	30889	30890	66194	66194					0.045926489288035555
VPSPLHPLV	9	Unmodified	_VPSPLHPLV_					0	0	0			REV__ENST00000526661.5_1_11:836524-836704:+|nuORF	REV__ENST00000526661.5_1_11:836524-836704:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.77288818359375	2	479.789653	957.564752	0.21905	0.0001051	-0.73749	-0.00035384	-0.51844	-0.00024874	479.7892683103411	49.645	0.47944	49.69	49.425	49.905	0.044891					39	17	3	0	0	0	0.23775	1	11408	11408		18.135	1.1927	1	522790	+		54022	21966	30890	30891	66195	66195					0.08427252173862598
VPSPRELTL	9	Unmodified	_VPSPRELTL_					0	0	0			REV__nc|ENSG00000179168|Q86UU5-3|GGN	REV__nc|ENSG00000179168|Q86UU5-3|GGN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.8219299316406	2	506.295299	1010.57605	0.41794	0.0002116	0.32756	0.00016584	0.74549	0.00037744	506.29529951406727	36.346	0.80744	36.346	36.037	36.844	0					65	28	3	0	0	0	0.19839	1	7361	7361		21.747	1.293	1	1277300	+		54023	18064	30891	30892	66196	66196					0.0711802947733986
VPSPRELTL	9	Unmodified	_VPSPRELTL_					0	0	0			REV__nc|ENSG00000179168|Q86UU5-3|GGN	REV__nc|ENSG00000179168|Q86UU5-3|GGN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.82171630859375	2	506.295299	1010.57605	0.45547	0.0002306	0.24921	0.00012617	0.70468	0.00035678	506.2952811863832	36.233	0.82773	36.315	36.036	36.863	0.082355					64	29	3	0	0	0	0.19839	1	7321	7321		21.747	1.293	1	1208900	+		54024	18064	30891	30892	66197	66197					0.0711802947733986
VPSPVLVATL	10	Unmodified	_VPSPVLVATL_					0	0	0			REV__ENST00000573309.5_1_16:10971115-11002148:+|nuORF	REV__ENST00000573309.5_1_16:10971115-11002148:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7909851074219	2	498.310418	994.606283	0.49938	0.00024885	-0.46287	-0.00023066	0.036504	1.819E-05	498.30997670346517	82.885	0.53557	82.864	82.621	83.157	-0.020584					44	20	3	0	0	0	0.31629	1	21578	21578		10.074	0	1	229410	+		54025	22413	30892	30893	66198	66198					0.1087638814251477
VPSRNSQTTE	10	Unmodified	_VPSRNSQTTE_					0	0	0		ENST00000439412.5_1_2:61071228-61083991:-|nuORF	ENST00000439412.5_1_2:61071228-61083991:-|nuORF	ENST00000439412.5_1_2:61071228-61083991:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7756958007812	2	559.775459	1117.53637	0.40786	0.00022831	0.19009	0.00010641	0.59796	0.00033472	559.775575715561	21.077	0.63401	21.077	20.825	21.459	0					70	21	4	0	0	0	0.41085	1	2760	2760		1.4819	0	1	266930			54026	10544	30893	30894	66199	66199					-0.017701422640357123
VPSRSSSAL	9	Unmodified	_VPSRSSSAL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2846984863281	2	452.248349	902.482145	0.26947	0.00012187	0.44164	0.00019973	0.71111	0.0003216	452.2484766398673	20.612	1.2815	20.612	20.235	21.517	0					95	44	3	0	0	0	0.12563	1	2617	2617		47.749	15.443	1	242430			54027	6752	30894	30895	66200	66200					0.027003103750644186
VPSRSSSAL	9	Unmodified	_VPSRSSSAL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.28460693359375	2	452.248349	902.482145	0.41194	0.0001863	0.33356	0.00015085	0.74549	0.00033715	452.2484238248647	20.748	1.1286	20.695	20.302	21.431	-0.05291					88	39	3	0	0	0	0.13898	1	2670	2670		43.858	11.553	1	299250			54028	6752	30894	30895	66201	66201					0.027003103750644186
VPSRSSSAL	9	Unmodified	_VPSRSSSAL_					0	0	0		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	452.248349	902.482145	0.46761	0.00021148	0.19348	8.7501E-05	0.66109	0.00029898	452.24840435318805	20.873	0.83266	20.763	20.466	21.298	-0.11003	0.072892	-0.0001132	NaN	39.95	70	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345460			54029	6752	30894	30895							0.027003103750644186
VPSSEEVSF	9	Unmodified	_VPSSEEVSF_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7328186035156	2	490.732197	979.449842	0.31755	0.00015583	1.2526	0.00061471	1.5702	0.00077054	490.7325077417649	66.333	0.80945	66.319	66.032	66.842	-0.013596					62	29	3	0	0	0	0.28128	1	16666	16666		11.64	0	1	567920			54030	891	30895	30896	66202	66202					-0.04070521818596262
VPSSFLLK	8	Unmodified	_VPSSFLLK_					0	0	0		ENSG00000125965|ENST00000374369|GDF5	ENSG00000125965|ENST00000374369|GDF5	ENSG00000125965|ENST00000374369|GDF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.23199462890625	2	445.770929	889.527304	0.10809	4.8185E-05	0.74121	0.00033041	0.8493	0.00037859	445.77095510467154	29.353	0.51846	29.367	29.166	29.684	0.013474					29	17	2	0	0	0	0.34319	1	5320	5320		2.5775	0	1	107210			54031	3247	30896	30897	66203	66203					0.0781216090823591
VPSSFLLK	8	Unmodified	_VPSSFLLK_					0	0	0		ENSG00000125965|ENST00000374369|GDF5	ENSG00000125965|ENST00000374369|GDF5	ENSG00000125965|ENST00000374369|GDF5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	445.770929	889.527304	0.1963	8.7506E-05	0.52584	0.00023441	0.72215	0.00032191	445.7709567960273	29.256	0.45486	29.268	29.134	29.589	0.012266	-0.049116	-6.5493E-05	NaN	2.5775	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129800			54032	3247	30896	30897							0.0781216090823591
VPSSIPSRL	9	Unmodified	_VPSSIPSRL_					0	0	0		ENST00000515415.5_1_5:57754875-57754959:-|nuORF	ENST00000515415.5_1_5:57754875-57754959:-|nuORF	ENST00000515415.5_1_5:57754875-57754959:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2718200683594	2	478.282192	954.549831	0.052719	2.5214E-05	-0.35337	-0.00016901	-0.30065	-0.0001438	478.2821005289775	40.918	0.37759	40.918	40.662	41.039	0					29	13	3	0	0	0	0.16283	1	8759	8759		29.082	3.6823	1	347350			54033	11425	30897	30898	66204	66204					0.07073760305854648
VPSSPALLLL	10	Unmodified	_VPSSPALLLL_					0	0	0		ENST00000409418.8_1_11:72852940-72853132:-|nuORF	ENST00000409418.8_1_11:72852940-72853132:-|nuORF	ENST00000409418.8_1_11:72852940-72853132:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2718200683594	2	505.318243	1008.62193	0.45509	0.00022996	-0.76704	-0.0003876	-0.31195	-0.00015764	505.3177345000872	79.056	0.39152	79.117	78.922	79.314	0.061417					46	18	3	0	0	0	0.31629	1	20516	20516		10.074	0	1	278190			54034	10248	30898	30899	66205	66205					0.11796674659569817
VPSSPRALFLL	11	Unmodified	_VPSSPRALFLL_					0	0	0		nc|ENSG00000144152|Q53RD9-4|FBLN7;nc|ENSG00000144152|Q53RD9-2|FBLN7;ENSG00000144152|ENST00000331203|FBLN7	nc|ENSG00000144152|Q53RD9-4|FBLN7	nc|ENSG00000144152|Q53RD9-4|FBLN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3262329101562	2	600.360973	1198.70739	0.49939	0.00029981	0.11071	6.6464E-05	0.6101	0.00036628	600.3609607813775	70.251	0.48883	70.251	70.023	70.512	0					30	17	3	0	0	0	0.32951	1	17843	17843		10.315	4.1234	1	175150			54035	4569	30899	30900	66206	66206					0.11598839845237308
VPSSPRALFLL	11	Unmodified	_VPSSPRALFLL_					0	0	0		nc|ENSG00000144152|Q53RD9-4|FBLN7;nc|ENSG00000144152|Q53RD9-2|FBLN7;ENSG00000144152|ENST00000331203|FBLN7	nc|ENSG00000144152|Q53RD9-4|FBLN7	nc|ENSG00000144152|Q53RD9-4|FBLN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.7918701171875	2	600.360973	1198.70739	0.4123	0.00024753	0.026415	1.5858E-05	0.43871	0.00026338	600.3609821165916	70.292	0.41466	70.27	70.081	70.495	-0.02272					27	14	2	0	0	0	0.32149	1	17779	17779		20.581	2.2078	1	156940			54036	4569	30899	30900	66207	66207					0.11598839845237308
VPSSRTRWT	9	Unmodified	_VPSSRTRWT_					0	0	0			REV__ENST00000564006.5_1_16:77225374-77227441:+|nuORF	REV__ENST00000564006.5_1_16:77225374-77227441:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2962646484375	2	545.293622	1088.57269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.99	1	118.97	118.47	119.47	-0.024147								0	0	0	0.26513	1	30733	30733		1.4819	0.15237	1		+		54037	19512	30900	30901	66208	66208					0.03194779423347427
VPSTHYIY	8	Unmodified	_VPSTHYIY_					0	0	0		nc|ENSG00000140538|Q16288-2|NTRK3	nc|ENSG00000140538|Q16288-2|NTRK3	nc|ENSG00000140538|Q16288-2|NTRK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.287841796875	2	490.247818	978.481082	0.29283	0.00014356	-0.42377	-0.00020775	-0.13094	-6.4193E-05	490.24729762832686	24.927	0.66681	24.927	24.486	25.153	0					33	22	2	0	0	0	0.34185	1	3837	3837		10.183	0	1	52723			54038	12729	30901	30902	66209	66209					-0.009019039938721107
VPSTHYIY	8	Unmodified	_VPSTHYIY_					0	0	0		nc|ENSG00000140538|Q16288-2|NTRK3	nc|ENSG00000140538|Q16288-2|NTRK3	nc|ENSG00000140538|Q16288-2|NTRK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.28765869140625	2	490.247818	978.481082	0.0079934	3.9187E-06	0.53317	0.00026138	0.54116	0.0002653	490.2478156711052	24.853	0.66563	24.821	24.515	25.181	-0.031408					31	22	2	0	0	0	0.33995	1	3797	3797		15.768	3.2367	1	64858			54039	12729	30901	30902	66210	66210					-0.009019039938721107
VPSTRHGAP	9	Unmodified	_VPSTRHGAP_					0	0	0			REV__ENSG00000130701|ENST00000252998|RBBP8NL	REV__ENSG00000130701|ENST00000252998|RBBP8NL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.60040283203125	2	461.248683	920.482814	-0.12889	-5.9452E-05	-1.0336	-0.00047675	-1.1625	-0.0005362	461.24835211618586	27.34	0.69787	27.34	27.091	27.789	0					38	23	2	0	0	0	0.2451	1	4600	4600		15.847	1.0089	1	152250	+		54040	15471	30902	30903	66211	66211					0.01939149814757002
VPSVKVLL	8	Unmodified	_VPSVKVLL_					0	0	0			REV__nc|ENSG00000153936|Q7LGA3-2|HS2ST1	REV__nc|ENSG00000153936|Q7LGA3-2|HS2ST1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.2660827636719	2	427.789121	853.56369	-0.27274	-0.00011668	-0.43034	-0.0001841	-0.70308	-0.00030077	427.7887784784512	42.831	0.40434	42.922	42.691	43.095	0.091362					21	14	2	0	0	0	0.30503	1	9309	9309		16.942	2.3606	1	103820	+		54041	23034	30903	30904	66212	66212					0.13105037804950825
VPSYTMEEME	10	Unmodified	_VPSYTMEEME_					0	0	0		PER2|p.V175M|1|0.21|ENSG00000132326|chr2:238273117-238273117|C/T|missense_variant	PER2|p.V175M|1|0.21|ENSG00000132326|chr2:238273117-238273117|C/T|missense_variant	PER2|p.V175M|1|0.21|ENSG00000132326|chr2:238273117-238273117|C/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.8339538574219	3	405.835119	1214.48353	-0.32397	-0.00013148	-1.4859	-0.00060304	-1.8099	-0.00073452	405.8342034006096	65.064	0.91959	65.153	64.656	65.576	0.088882					63	33	3	0	0	0	0.3641	1	16199	16199		5.7834	0	1	508480			54042	13044	30904	30905	66213	66213					-0.11513604433389446
VPTACRKAK	9	Unmodified	_VPTACRKAK_					0	0	0			REV__nc|ENSG00000088325|Q9ULW0-2|TPX2	REV__nc|ENSG00000088325|Q9ULW0-2|TPX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.9315490722656	2	487.284211	972.55387	-0.0072168	-3.5167E-06	-3.0586	-0.0014904	-3.0658	-0.0014939	487.28245819680546	30.283	0.31439	30.31	30.134	30.448	0.027159					22	10	3	0	0	0	0.24913	1	5472	5472		12.532	0	1	102130	+		54043	14006	30905	30906	66214	66214					0.0664952652791726
VPTACRKAK	9	Unmodified	_VPTACRKAK_					0	0	0			REV__nc|ENSG00000088325|Q9ULW0-2|TPX2	REV__nc|ENSG00000088325|Q9ULW0-2|TPX2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	487.284211	972.55387	0.35242	0.00017173	-4.1119	-0.0020037	-3.7595	-0.0018319	487.2822082345617	30.266	0.30575	30.266	30.113	30.418	0	-0.0089586	-0.00044735	NaN	12.532	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90331	+		54044	14006	30905	30906							0.0664952652791726
VPTACRKAK	9	Unmodified	_VPTACRKAK_					0	0	0			REV__nc|ENSG00000088325|Q9ULW0-2|TPX2	REV__nc|ENSG00000088325|Q9ULW0-2|TPX2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	487.284211	972.55387	0.34787	0.00016951	-3.5976	-0.001753	-3.2497	-0.0015835	487.28245399939556	30.221	0.42261	30.249	30.048	30.47	0.027946	-0.025998	5.389E-05	NaN	12.532	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85342	+		54045	14006	30905	30906							0.0664952652791726
VPTARVLL	8	Unmodified	_VPTARVLL_					0	0	0			REV__nc|ENSG00000137496|O95998-3|IL18BP	REV__nc|ENSG00000137496|O95998-3|IL18BP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.8023376464844	2	434.78437	867.554188	-0.27506	-0.00011959	1.0544	0.00045845	0.77937	0.00033886	434.7845674268862	62.085	0.2504	62.182	61.978	62.228	0.096985					10	8	2	0	0	0	0.31934	1	15243	15243		18.135	0	1	72408	+		54046	15866	30906	30907	66215	66215					0.11511269519428424
VPTDPPRTI	9	Unmodified	_VPTDPPRTI_					0	0	0		ENSG00000132004|ENST00000393261|FBXW9;nc|ENSG00000132004|Q5XUX1-2|FBXW9	ENSG00000132004|ENST00000393261|FBXW9	ENSG00000132004|ENST00000393261|FBXW9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7261657714844	2	498.279649	994.544745	-0.61568	-0.00030678	-0.013989	-6.9703E-06	-0.62967	-0.00031375	498.2795395854739	35.132	0.60686	35.132	34.805	35.412	0					34	21	2	0	0	0	0.24993	1	7062	7062		13.042	2.9685	1	169010			54047	3606	30907	30908	66216	66216					0.04725456443236453
VPTEISTPK	9	Unmodified	_VPTEISTPK_					0	0	0		ENST00000398117.1_1_18:60795154-60795277:-|nuORF	ENST00000398117.1_1_18:60795154-60795277:-|nuORF	ENST00000398117.1_1_18:60795154-60795277:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002624511719	2	486.274032	970.533512	0.29163	0.00014181	0.55687	0.00027079	0.8485	0.00041261	486.2744831671914	42.417	0.51453	42.508	42.23	42.744	0.091362					40	17	4	0	0	0	0.2451	1	9279	9279		10.824	3.5347	1	529410			54048	10155	30908	30909	66217	66217					0.04706634349099659
VPTGEESI	8	Unmodified	_VPTGEESI_					0	0	0			REV__nc|ENSG00000127603|O94854-4|MACF1	REV__nc|ENSG00000127603|O94854-4|MACF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.21551513671875	2	416.208358	830.402163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.636	1	22.548	22.048	23.048	-0.087608								0	0	0	0.35985	1	3208	3208		10.183	0	1		+		54049	22984	30909	30910	66218	66218					-0.019821760188051485
VPTKRWRR	8	Unmodified	_VPTKRWRR_					0	0	0		ENST00000589998.5_2_19:10794072-10794123:+|nuORF	ENST00000589998.5_2_19:10794072-10794123:+|nuORF	ENST00000589998.5_2_19:10794072-10794123:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7930908203125	2	549.835791	1097.65703	0.2258	0.00012415	-1.0821	-0.000595	-0.85634	-0.00047085	549.8357385344017	15.716	0.28898	15.651	15.517	15.806	-0.064413					15	9	2	0	0	0	0.34437	1	1079	1079		0.69038	0	1	29313			54050	12167	30910	30911	66219	66219					0.11210775030735931
VPTLISYLL	9	Unmodified	_VPTLISYLL_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8133239746094	2	509.812793	1017.61103	0.53166	0.00027105	-0.71849	-0.0003663	-0.18683	-9.5248E-05	509.812658413405	85.228	0.58463	85.228	84.92	85.504	0					41	22	3	0	0	0	0.1669	1	22355	22355		28.487	6.7402	1	275390			54051	403	30911	30912	66220	66220					0.10293272285287003
VPTLISYLL	9	Unmodified	_VPTLISYLL_					0	0	0		nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	nc|ENSG00000008869|Q9P2D3-3|HEATR5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.8126525878906	2	509.812793	1017.61103	0.47728	0.00024332	-0.31617	-0.00016119	0.16112	8.2139E-05	509.81267249386394	85.161	0.56152	85.148	84.889	85.451	-0.01284					34	22	2	0	0	0	0.21303	1	22383	22383		21.747	5.8995	1	252660			54052	403	30911	30912	66221	66221					0.10293272285287003
VPTLLWKNF	9	Unmodified	_VPTLLWKNF_					0	0	0			REV__ENSG00000185352|ENST00000376705|HS6ST3	REV__ENSG00000185352|ENST00000376705|HS6ST3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.8131103515625	2	559.32386	1116.63317	0.054387	3.042E-05	1.9541	0.001093	2.0085	0.0011234	559.3250432228247	23.034	0.26472	23.034	22.845	23.11	0					13	8	2	0	0	0	0.25622	1	3305	3305		7.2892	0.56607	1	33650	+		54053	18375	30912	30913	66222	66222					0.07951496753685205
VPTLTRRHER	10	Unmodified	_VPTLTRRHER_					0	0	0			REV__ENSG00000205667|ENST00000381130|ARSH	REV__ENSG00000205667|ENST00000381130|ARSH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2302551269531	3	422.245944	1263.716	-0.020025	-8.4554E-06	0.038197	1.6129E-05	0.018173	7.6733E-06	422.5805456430727	20.313	0.48637	20.313	20.136	20.622	0					30	17	2	0	0	0	0.32137	1	2533	2533		0.62683	0.12087	1	72181	+		54054	18996	30913	30914	66223	66223					0.09469206534413388
VPTLWSPK	8	Unmodified	_VPTLWSPK_					0	0	0			REV__ENSG00000068878|ENST00000404125|PSME4	REV__ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.8008117675781	2	464.268553	926.522553	0.62746	0.00029131	-1.1396	-0.00052908	-0.51215	-0.00023777	464.2677605472024	36.564	0.62861	36.657	36.458	37.086	0.093014					32	22	2	0	0	0	0.33245	1	7422	7422		13.508	0	1	226280	+		54055	13706	30914	30915	66224	66224					0.05635276765474373
VPTPLPWNAMI	11	Unmodified	_VPTPLPWNAMI_					0	0	0		LRRC15|p.S57I|1|0.09|ENSG00000172061|chr3:194360874-194360874|C/A|missense_variant	LRRC15|p.S57I|1|0.09|ENSG00000172061|chr3:194360874-194360874|C/A|missense_variant	LRRC15|p.S57I|1|0.09|ENSG00000172061|chr3:194360874-194360874|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5785217285156	3	413.558248	1237.65292	0.48296	0.00019973	-0.89795	-0.00037135	-0.41499	-0.00017162	413.5579051663137	54.604	0.53901	54.588	54.361	54.9	-0.015923					29	18	2	0	0	0	0.32774	1	13046	13046		13.519	2.7192	1	531910			54056	12505	30915	30916	66225	66225					0.04359504702142658
VPTPSDILGL	10	Unmodified	_VPTPSDILGL_					0	0	0		ENSG00000131379|ENST00000253697|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7586669921875	2	506.289682	1010.56481	0.38149	0.00019314	1.2076	0.00061139	1.5891	0.00080454	506.29020789914887	44.913	0.66328	44.982	44.682	45.345	0.068573					38	23	2	0	0	0	0.25875	1	9979	9979		25.399	0	1	406060			54057	3559	30916	30917	66226	66226					0.059952073831937014
VPTRLPSL	8	Unmodified	_VPTRLPSL_					0	0	0			REV__ENST00000274849.2_1_6:26598869-26599091:+|nuORF	REV__ENST00000274849.2_1_6:26598869-26599091:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.2842102050781	2	441.774003	881.533452	0.23314	0.000103	1.8398	0.00081276	2.0729	0.00091575	441.77511852066516	43.356	0.67443	43.44	43.035	43.71	0.083996					36	24	2	0	0	0	0.32937	1	9388	9388		17.113	3.2068	1	434140	+		54058	19689	30917	30918	66227	66227					0.08794679139748496
VPTRRRRLQ	9	Unmodified	_VPTRRRRLQ_					0	0	0		ENST00000486702.1_1_7:99768818-99769832:-|nuORF;ENSG00000213420|ENST00000292377|GPC2	ENST00000486702.1_1_7:99768818-99769832:-|nuORF	ENST00000486702.1_1_7:99768818-99769832:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.79931640625	2	591.37053	1180.72651	0.017042	1.0078E-05	1.6581	0.00098056	1.6752	0.00099064	591.3716650375292	38.921	0.14239	38.921	38.816	38.958	0					5	4	2	0	0	0	0.26168	1	8149	8149		1.8442	0.36234	1	82793			54059	8343	30918	30919	66228	66228					0.14337233979517805
VPTRRRRLQ	9	Unmodified	_VPTRRRRLQ_					0	0	0		ENST00000486702.1_1_7:99768818-99769832:-|nuORF;ENSG00000213420|ENST00000292377|GPC2	ENST00000486702.1_1_7:99768818-99769832:-|nuORF	ENST00000486702.1_1_7:99768818-99769832:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	591.37053	1180.72651	0.50496	0.00029862	1.5724	0.00092987	2.0774	0.0012285	591.3715037346127	38.624	0.13592	38.722	38.622	38.758	0.097527	-0.09963	-1.4656E-05	NaN	1.8442	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129910			54060	8343	30918	30919							0.14337233979517805
VPTSELTPK	9	Unmodified	_VPTSELTPK_					0	0	0			REV__nc|ENSG00000126883|P35658-2|NUP214	REV__nc|ENSG00000126883|P35658-2|NUP214	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8001708984375	2	486.274032	970.533512	0.058058	2.8232E-05	-0.3671	-0.00017851	-0.30904	-0.00015028	486.27341748520524	41.025	0.29988	41.122	40.96	41.259	0.096626					14	10	2	0	0	0	0.24311	1	8827	8827		16.942	0	1	112890	+		54061	15326	30919	30920	66229	66229					0.047066343490769214
VPTSRQSVS	9	Unmodified	_VPTSRQSVS_					0	0	0			REV__ENSG00000112367|ENST00000230124|FIG4	REV__ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.76727294921875	2	480.759081	959.503609	0.018309	8.802E-06	-0.56503	-0.00027164	-0.54672	-0.00026284	480.7587065251557	29.765	0.70293	29.778	29.564	30.267	0.013475					60	23	4	0	0	0	0.17787	1	5313	5313		26.884	6.4691	1	537530	+		54062	14774	30920	30921	66230	66230					0.022236954037680334
VPTVPEKL	8	Unmodified	_VPTVPEKL_					0	0	0			REV__ENSG00000121297|ENST00000240587|TSHZ3	REV__ENSG00000121297|ENST00000240587|TSHZ3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.76824951171875	2	441.768386	881.522219	0.13905	6.1427E-05	-0.33966	-0.00015005	-0.20061	-8.8623E-05	441.7680933250697	41.518	1.7651	41.518	39.831	41.596	0					126	64	2	0	0	0	0.32038	1	8959	8959		28.487	0	1	1142000	+		54063	15115	30921	30922	66231	66231					0.07671857045602337
VPTVYHAK	8	Unmodified	_VPTVYHAK_					0	0	0			REV__ENSG00000062096|ENST00000381127|ARSF	REV__ENSG00000062096|ENST00000381127|ARSF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.1640930175781	2	457.758352	913.502152	0.14704	6.731E-05	-2.613	-0.0011961	-2.466	-0.0011288	457.7560576236824	26.184	0.28539	26.162	26.043	26.328	-0.022238					13	9	2	0	0	0	0.32778	1	4281	4281		20.871	0	1	22740	+		54064	13629	30922	30923	66232	66232					0.04194106105649098
VPTWATKR	8	Unmodified	_VPTWATKR_					0	0	0		ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7773132324219	2	479.777077	957.5396	0.39992	0.00019187	0.37136	0.00017817	0.77128	0.00037004	479.77702707741884	36.212	1.209	36.294	35.682	36.891	0.082355					76	43	3	0	0	0	0.27124	1	7343	7343		34.102	3.8776	1	732370			54065	3801	30923	30924	66233	66233					0.05913197371273782
VPTWATKR	8	Unmodified	_VPTWATKR_					0	0	0		ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7774658203125	2	479.777077	957.5396	0.57054	0.00027373	0.089155	4.2774E-05	0.65969	0.00031651	479.7769196831135	36.117	0.96135	36.204	35.982	36.944	0.08625					71	34	3	0	0	0	0.20518	1	7349	7349		42.095	11.87	1	713190			54066	3801	30923	30924	66234	66234					0.05913197371273782
VPVAFWTL	8	Unmodified	_VPVAFWTL_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2531433105469	2	466.765646	931.516739	0.2359	0.00011011	2.3537	0.0010986	2.5896	0.0012087	466.7673475568461	32.261	0.11313	32.315	32.223	32.336	0.054371					5	3	2	0	0	0	0.34092	1	6107	6107		8.5933	3.3626	1	46548			54067	4701	30924	30925	66235	66235					0.048241782538070765
VPVETRASL	9	Unmodified	_VPVETRASL_					0	0	0		nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97;ENST00000489172.5_1_3:101443520-101477325:+|nuORF	nc|ENSG00000182504|Q8IW35-2|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8004150390625	2	486.279649	970.544745	0.48521	0.00023595	-0.33455	-0.00016268	0.15066	7.3264E-05	486.2794811577926	39.989	0.64059	40.082	39.917	40.557	0.09267					36	22	2	0	0	0	0.1939	1	8483	8483		30.637	3.0077	1	233200			54068	7296	30925	30926	66236	66236					0.05829456443234449
VPVETRASL	9	Unmodified	_VPVETRASL_					0	0	0		nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97;ENST00000489172.5_1_3:101443520-101477325:+|nuORF	nc|ENSG00000182504|Q8IW35-2|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	486.279649	970.544745	0.3476	0.00016903	-0.26809	-0.00013037	0.079507	3.8663E-05	486.27946960042783	40.266	0.58036	40.266	39.996	40.576	0	0.12249	4.8905E-05	NaN	30.637	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237030			54069	7296	30925	30926							0.05829456443234449
VPVETRASL	9	Unmodified	_VPVETRASL_					0	0	0		nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97;ENST00000489172.5_1_3:101443520-101477325:+|nuORF	nc|ENSG00000182504|Q8IW35-2|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	486.279649	970.544745	0.38151	0.00018552	-0.38427	-0.00018686	-0.0027522	-1.3384E-06	486.2795027005702	39.983	0.66241	40.083	39.817	40.479	0.099407	-0.061008	-6.4081E-05	NaN	30.637	36	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249420			54070	7296	30925	30926							0.05829456443234449
VPVFRNLSL	9	Unmodified	_VPVFRNLSL_					0	0	0		MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant;nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.81298828125	2	522.813659	1043.61277	0.67827	0.00035461	-0.70355	-0.00036782	-0.025277	-1.3215E-05	522.8132456846246	60.955	0.46325	60.955	60.664	61.128	0					30	16	2	0	0	0	0.07944	1	14935	14935		41.956	9.1699	1	1520900			54071	5508	30926	30927	66237	66237					0.09270326093906078
VPVFRNLSL	9	Unmodified	_VPVFRNLSL_					0	0	0		MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant;nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.8137817382812	2	522.813659	1043.61277	0.63635	0.00033269	-0.21174	-0.0001107	0.42461	0.00022199	522.8134988834516	60.856	0.45459	60.953	60.639	61.093	0.096985					33	15	3	0	0	0	0.04299	1	14887	14887		55.503	15.553	1	1388500			54072	5508	30926	30927	66238	66238					0.09270326093906078
VPVFRNLSL	9	Unmodified	_VPVFRNLSL_					0	0	0		MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant;nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MFSD12|p.G347Rfs*67|1|0.32|ENSG00000161091|chr19:3546410-3546411|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8139038085938	2	522.813659	1043.61277	0.65561	0.00034276	-0.34268	-0.00017916	0.31293	0.0001636	522.8134293689902	60.964	0.4769	60.955	60.656	61.133	-0.0094566					28	17	2	0	0	0	0.064268	1	14935	14935		47.594	14.809	1	2103800			54073	5508	30926	30927	66239	66239					0.09270326093906078
VPVGHLVVL	9	Unmodified	_VPVGHLVVL_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7997741699219	2	466.80002	931.585488	0.72772	0.0003397	-0.71769	-0.00033502	0.010025	4.6797E-06	466.79959991149417	56.067	0.48324	56.067	55.758	56.241	0					28	16	2	0	0	0	0.041522	1	13423	13423		56.048	34.302	1	621730			54074	2256	30927	30928	66240	66240					0.11695842553513103
VPVGHLVVL	9	Unmodified	_VPVGHLVVL_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.800048828125	2	466.80002	931.585488	0.52499	0.00024506	-0.58761	-0.00027429	-0.062618	-2.923E-05	466.79967062116424	55.962	0.35942	56.033	55.828	56.187	0.070885					19	12	2	0	0	0	0.16905	1	13424	13424		28.173	13.592	1	989240			54075	2256	30927	30928	66241	66241					0.11695842553513103
VPVGHLVVL	9	Unmodified	_VPVGHLVVL_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.8000793457031	2	466.80002	931.585488	0.70281	0.00032807	-0.55962	-0.00026123	0.14318	6.6837E-05	466.7996365689552	56.025	0.36286	56.006	55.824	56.187	-0.019081					22	12	2	0	0	0	0.044139	1	13421	13421		56.048	41.467	1	705580			54076	2256	30927	30928	66242	66242					0.11695842553513103
VPVGKDRPRGP	11	Unmodified	_VPVGKDRPRGP_					0	0	0			REV__ENSG00000182450|ENST00000422670|KCNK4	REV__ENSG00000182450|ENST00000422670|KCNK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3436889648438	2	589.343646	1176.67274	0.062049	3.6568E-05	-0.50741	-0.00029904	-0.44536	-0.00026247	589.3433082742267	97.484	0.85527	97.484	97.135	97.991	0					153	89	2	0	0	0	0.47742	1	26071	26071		1.0715	0.46996	1	132520	+		54077	18198	30928	30929	66243	66243					0.09147016757128767
VPVGLVFVAFA	11	Unmodified	_VPVGLVFVAFA_					0	0	0		ENST00000566056.1_1_16:30959736-30965162:+|nuORF;ENSG00000175938|ENST00000318663|ORAI3	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	ENST00000566056.1_1_16:30959736-30965162:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2911987304688	2	559.83406	1117.65357	0.34806	0.00019486	1.907	0.0010676	2.2551	0.0012625	559.83501844176	66.707	0.71291	66.791	66.415	67.128	0.083832					51	25	3	0	0	0	0.3241	1	16647	16647		10.824	0	1	288530			54078	6893	30929	30930	66244	66244					0.09944667413515162
VPVGRQPII	9	Unmodified	_VPVGRQPII_					0	0	0		nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1	nc|ENSG00000131023|O95835-2|LATS1	nc|ENSG00000131023|O95835-2|LATS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.808349609375	2	489.808377	977.6022	0.51877	0.0002541	-0.42147	-0.00020644	0.097303	4.766E-05	489.8080872186111	40.362	0.7029	40.454	40.176	40.879	0.09267					64	25	3	0	0	0	0.051692	1	8620	8620		52.268	25.385	1	699910			54079	3537	30930	30931	66245	66245					0.11250343439473909
VPVGRQPII	9	Unmodified	_VPVGRQPII_					0	0	0		nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1	nc|ENSG00000131023|O95835-2|LATS1	nc|ENSG00000131023|O95835-2|LATS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	489.808377	977.6022	0.51463	0.00025207	-0.37663	-0.00018448	0.13799	6.7591E-05	489.8080821524912	40.399	0.71311	40.399	40.161	40.875	0	-0.032146	1.6066E-05	NaN	52.268	61	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	694020			54080	3537	30930	30931							0.11250343439473909
VPVGRQPII	9	Unmodified	_VPVGRQPII_					0	0	0		nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1	nc|ENSG00000131023|O95835-2|LATS1	nc|ENSG00000131023|O95835-2|LATS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	489.808377	977.6022	0.45533	0.00022302	-0.37098	-0.00018171	0.084353	4.1317E-05	489.80807803576823	40.341	0.68964	40.44	40.146	40.835	0.099407	0.0090831	2.1605E-05	NaN	52.268	60	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	657510			54081	3537	30930	30931							0.11250343439473909
VPVGTSVLTV	10	Unmodified	_VPVGTSVLTV_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3;nc|ENSG00000165323|Q8TDW7-2|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.30548095703125	2	486.292225	970.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.493	1	30.521	30.021	31.021	0.027946								0	0	0	0.34755	1	5587	5587		15.847	2.3393	1				54082	5950	30931	30932	66246	66246					0.08343511245800528
VPVGYTSLV	9	Unmodified	_VPVGYTSLV_					0	0	0		nc|ENSG00000160753|Q9BVN2-2|RUSC1;nc|ENSG00000160753|Q9BVN2-3|RUSC1;nc|ENSG00000160753|Q9BVN2-4|RUSC1;ENSG00000160753|ENST00000368352|RUSC1	nc|ENSG00000160753|Q9BVN2-2|RUSC1	nc|ENSG00000160753|Q9BVN2-2|RUSC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7715148925781	2	467.765843	933.517133	0.21507	0.0001006	3.1996	0.0014966	3.4146	0.0015972	467.77129039351934	39.415	0.68428	39.514	39.184	39.868	0.099407					54	24	3	0	0	0	0.079066	1	8306	8306		42.095	7.9921	1	496490			54083	5484	30932	30933	66247	66247					0.04771553183013566
VPVITPYL	8	Unmodified	_VPVITPYL_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7716369628906	2	451.273304	900.532055	0.24851	0.00011215	0.19702	8.8911E-05	0.44553	0.00020106	451.2733881512497	73.049	0.69598	73.049	72.639	73.335	0					34	24	2	0	0	0	0.34353	1	18637	18637		4.756	0	1	155670			54084	7871	30933	30934	66248	66248					0.07781045051001456
VPVITPYL	8	Unmodified	_VPVITPYL_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	451.273304	900.532055	0.12779	5.7667E-05	0.53884	0.00024316	0.66663	0.00030083	451.27357665000915	72.989	0.68041	73.043	72.681	73.362	0.053833	-0.019478	0.00017651	NaN	8.5933	34	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126510			54085	7871	30933	30934							0.07781045051001456
VPVITPYL	8	Unmodified	_VPVITPYL_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	451.273304	900.532055	0.3264	0.0001473	0.32355	0.00014601	0.64995	0.0002933	451.27336638330314	73.125	0.57774	73.096	72.767	73.345	-0.029305	0.033091	-1.7803E-05	NaN	8.5933	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182680			54086	7871	30933	30934							0.07781045051001456
VPVNQNSTL	9	Unmodified	_VPVNQNSTL_					0	0	0			REV__FKTN|p.K278Rfs*6|1|0.22|ENSG00000106692|chr9:105615328-105615328|A/-|frameshift_variant	REV__FKTN|p.K278Rfs*6|1|0.22|ENSG00000106692|chr9:105615328-105615328|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2746887207031	2	486.261456	970.50836	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.529	1	30.556	30.056	31.056	0.027157								0	0	0	0.21009	1	5593	5593		19.257	1.1106	1		+		54087	14532	30934	30935	66249	66249					0.021925795465335796
VPVPHTTAL	9	Unmodified	_VPVPHTTAL_					0	0	0		nc|ENSG00000086062|P15291-2|B4GALT1;ENSG00000086062|ENST00000379731|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7713317871094	2	467.77146	933.528367	-0.02787	-1.3037E-05	0.058579	2.7401E-05	0.030709	1.4365E-05	467.77139599182493	39.45	0.71531	39.543	39.201	39.917	0.09267					51	25	3	0	0	0	0.010938	1	8318	8318		77.984	3.5616	1	575760			54088	1275	30935	30936	66250	66250					0.058943752771256186
VPVPPNVAF	9	Unmodified	_VPVPPNVAF_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.7608642578125	2	470.268553	938.522553	0.14856	6.9863E-05	-0.039064	-1.8371E-05	0.1095	5.1492E-05	470.2684915786245	65.573	1.2411	65.573	65.1	66.341	0					74	44	2	0	0	0	0.18943	1	16484	16484		23.148	7.3012	1	381590			54089	1073	30936	30937	66251	66251					0.05083276765469691
VPVPPNVAF	9	Unmodified	_VPVPPNVAF_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.76092529296875	2	470.268553	938.522553	0.25719	0.00012095	-0.24835	-0.00011679	0.008841	4.1576E-06	470.26827461037055	65.589	1.3597	65.578	64.996	66.355	-0.011337					78	49	2	0	0	0	0.1669	1	16467	16467		28.487	10.34	1	368290			54090	1073	30936	30937	66252	66252					0.05083276765469691
VPVPPNVAF	9	Unmodified	_VPVPPNVAF_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.76043701171875	2	470.268553	938.522553	0.12927	6.0791E-05	-0.77313	-0.00036358	-0.64386	-0.00030279	470.2681297084993	66.691	0.4884	66.678	66.353	66.842	-0.013596					31	17	3	0	0	0	0.21303	1	16664	16664		21.747	0.87544	1	147260			54091	1073	30936	30937	66253	66253					0.05083276765469691
VPVRGARNQL	10	Unmodified	_VPVRGARNQL_					0	0	0		nc|ENSG00000167645|Q5BJH7-2|YIF1B;nc|ENSG00000167645|Q5BJH7-6|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B;ENSG00000167645|ENST00000339413|YIF1B	nc|ENSG00000167645|Q5BJH7-2|YIF1B	nc|ENSG00000167645|Q5BJH7-2|YIF1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3307495117188	2	555.330539	1108.64652	0.22056	0.00012248	0.017324	9.6208E-06	0.23788	0.0001321	555.3304949833889	26.946	0.84689	26.925	26.681	27.528	-0.021412					55	29	3	0	0	0	0.33817	1	4529	4529		14.838	0.93222	1	343820			54092	6194	30937	30938	66254	66254					0.09654747585659607
VPVRHVNIQS	10	Unmodified	_VPVRHVNIQS_					0	0	0			REV__nc|ENSG00000163534|Q96LA6-3|FCRL1	REV__nc|ENSG00000163534|Q96LA6-3|FCRL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.2778930664062	2	574.830372	1147.64619	-0.11262	-6.4736E-05	2.6548	0.001526	2.5422	0.0014613	574.8317747458149	13.178	0.25107	13.178	13.058	13.309	0					14	8	2	0	0	0	0.32146	1	345	345		1.1933	0	1	48300	+		54093	17067	30938	30939	66255	66255					0.0782732786581164
VPVSQLQTL	9	Unmodified	_VPVSQLQTL_					0	0	0			REV__ENST00000560168.1_1_19:46268761-46269535:-|nuORF	REV__ENST00000560168.1_1_19:46268761-46269535:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.77398681640625	2	492.78985	983.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.919	1	72.919	72.419	73.419	0								0	0	0	0.21726	1	18612	18612		16.942	3.0362	1		+		54094	17969	30939	30940	66256	66256					0.07270627103048355
VPVSQLQTL	9	Unmodified	_VPVSQLQTL_					0	0	0			REV__ENST00000560168.1_1_19:46268761-46269535:-|nuORF	REV__ENST00000560168.1_1_19:46268761-46269535:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.77392578125	2	492.78985	983.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.965	1	72.935	72.435	73.435	-0.029305								0	0	0	0.19534	1	18611	18611		24.021	1.2843	1		+		54095	17969	30939	30940	66257	66257					0.07270627103048355
VPVTRPAL	8	Unmodified	_VPVTRPAL_					0	0	0		ENSG00000185499|ENST00000620103|MUC1;nc|ENSG00000185499|P15941-5|MUC1;nc|ENSG00000185499|P15941-4|MUC1;nc|ENSG00000185499|P15941-3|MUC1;nc|ENSG00000185499|P15941|MUC1;nc|ENSG00000185499|P15941-2|MUC1	ENSG00000185499|ENST00000620103|MUC1	ENSG00000185499|ENST00000620103|MUC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.9417419433594	2	426.76872	851.522887	-0.11295	-4.8202E-05	-0.57551	-0.00024561	-0.68845	-0.00029381	426.7685676613173	38.133	0.99801	38.133	37.767	38.765	0					47	35	2	0	0	0	0.33661	1	7877	7877		19.257	7.6167	1	252820			54096	7536	30940	30941	66258	66258					0.09118696485313649
VPVTRPAL	8	Unmodified	_VPVTRPAL_					0	0	0		ENSG00000185499|ENST00000620103|MUC1;nc|ENSG00000185499|P15941-5|MUC1;nc|ENSG00000185499|P15941-4|MUC1;nc|ENSG00000185499|P15941-3|MUC1;nc|ENSG00000185499|P15941|MUC1;nc|ENSG00000185499|P15941-2|MUC1	ENSG00000185499|ENST00000620103|MUC1	ENSG00000185499|ENST00000620103|MUC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.9418640136719	2	426.76872	851.522887	-0.057259	-2.4436E-05	-0.76483	-0.00032641	-0.82209	-0.00035084	426.7685095484348	37.962	1.0997	38.059	37.768	38.867	0.097527					57	39	2	0	0	0	0.32099	1	7855	7855		25.399	2.2509	1	256190			54097	7536	30940	30941	66259	66259					0.09118696485313649
VPVVLVRGLM	10	Unmodified	_VPVVLVRGLM_					0	0	0			REV__ENSG00000145040|ENST00000273610|UCN2	REV__ENSG00000145040|ENST00000273610|UCN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2935791015625	2	541.841362	1081.66817	0.59225	0.00032091	-0.37707	-0.00020431	0.21518	0.0001166	541.8410474390996	32.333	0.4312	32.387	32.198	32.63	0.054375					27	15	2	0	0	0	0.32033	1	6095	6095		3.5965	0	1	184310	+		54098	16274	30941	30942	66260	66260					0.1306041628999992
VPVVLVRGLM	10	Unmodified	_VPVVLVRGLM_					0	0	0			REV__ENSG00000145040|ENST00000273610|UCN2	REV__ENSG00000145040|ENST00000273610|UCN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.841362	1081.66817	0.75876	0.00041113	-0.28045	-0.00015196	0.47831	0.00025917	541.8411772563094	32.35	0.54694	32.35	32.145	32.692	0	-0.024906	4.5296E-05	NaN	3.5965	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158260	+		54099	16274	30941	30942							0.1306041628999992
VPVVLVRGLM	10	Unmodified	_VPVVLVRGLM_					0	0	0			REV__ENSG00000145040|ENST00000273610|UCN2	REV__ENSG00000145040|ENST00000273610|UCN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	541.841362	1081.66817	0.85129	0.00046126	-0.32776	-0.0001776	0.52352	0.00028367	541.8410156706552	32.332	0.40474	32.387	32.157	32.562	0.055313	0.012569	-5.9767E-06	NaN	3.5965	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186250	+		54100	16274	30941	30942							0.1306041628999992
VPVYLVQKA	9	Unmodified	_VPVYLVQKA_					0	0	0			REV__NOL4|p.V105Pfs*5|1|0.04|ENSG00000101746|chr18:34129972-34129973|-/ATAAATTAGG|frameshift_variant	REV__NOL4|p.V105Pfs*5|1|0.04|ENSG00000101746|chr18:34129972-34129973|-/ATAAATTAGG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.66937255859375	2	508.810585	1015.60662	0.19948	0.0001015	-2.247	-0.0011433	-2.0475	-0.0010418	508.8093763680338	18.143	0.39494	18.143	18.024	18.419	0					15	13	2	0	0	0	0.25879	1	1856	1856		4.756	0.81161	1	20237	+		54101	14285	30942	30943	66261	66261					0.09943807862373433
VPWKFKQQ	8	Unmodified	_VPWKFKQQ_					0	0	0			REV__ENST00000318238.8_1_7:92777541-92777640:-|nuORF	REV__ENST00000318238.8_1_7:92777541-92777640:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.8011474609375	2	530.800552	1059.58655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.012	1	91.102	90.602	91.602	0.090668								0	0	0	0.36961	1	24139	24139		5.7604	0.52976	1		+		54102	19948	30943	30944	66262	66262					0.059140569224155115
VPWKGLQNI	9	Unmodified	_VPWKGLQNI_					0	0	0		nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C	nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2720336914062	2	527.805834	1053.59712	0.57574	0.00030388	0.33047	0.00017443	0.90621	0.0004783	528.3076525126473	52.801	0.43763	52.801	52.574	53.012	0					37	15	3	0	0	0	0.10135	1	12422	12422		36.127	0	1	514500			54103	1114	30944	30945	66263	66263					0.07246039576853036
VPWKGLQNI	9	Unmodified	_VPWKGLQNI_					0	0	0		nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C	nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2718505859375	2	527.805834	1053.59712	0.50795	0.0002681	0.87936	0.00046413	1.3873	0.00073223	528.3079566574776	52.959	0.43395	52.95	52.708	53.142	-0.0096054					35	15	3	0	0	0	0.1939	1	12451	12451		24.021	0	1	580130			54104	1114	30944	30945	66264	66264					0.07246039576853036
VPWQQENEPL	10	Unmodified	_VPWQQENEPL_					0	0	0			REV__ENSG00000169180|ENST00000304658|XPO6	REV__ENSG00000169180|ENST00000304658|XPO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.8704833984375	3	413.87166	1238.59315	0.026366	1.0912E-05	-2.8757	-0.0011902	-2.8493	-0.0011792	413.8706364723591	30.475	0.45395	30.475	30.194	30.648	0					34	15	3	0	0	0	0.38773	1	5597	5597		3.0723	0.98626	1	132500	+		54105	17501	30945	30946	66265	66265					-0.01660094707517601
VPWQQENEPL	10	Unmodified	_VPWQQENEPL_					0	0	0			REV__ENSG00000169180|ENST00000304658|XPO6	REV__ENSG00000169180|ENST00000304658|XPO6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	413.87166	1238.59315	0.34634	0.00014334	-3.4811	-0.0014407	-3.1347	-0.0012974	413.87056459728655	30.47	0.58986	30.498	30.189	30.778	0.027946	0.011772	-0.00046041	NaN	3.0723	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130700	+		54106	17501	30945	30946							-0.01660094707517601
VPWTVISI	8	Unmodified	_VPWTVISI_					0	0	0		ENST00000397264.4_1_10:5977361-5977517:-|nuORF	ENST00000397264.4_1_10:5977361-5977517:-|nuORF	ENST00000397264.4_1_10:5977361-5977517:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.30487060546875	2	457.770929	913.527304	-0.14352	-6.5699E-05	1.1354	0.00051977	0.99192	0.00045407	457.77121170381065	75.971	0.71367	75.971	75.682	76.396	0					41	25	2	0	0	0	0.31934	1	19542	19542		24.674	2.9272	1	270900			54107	10135	30946	30947	66266	66266					0.06708160908226546
VPYAGINI	8	Unmodified	_VPYAGINI_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.739501953125	2	423.739628	845.464704	-0.10239	-4.3385E-05	0.22075	9.3543E-05	0.11837	5.0158E-05	423.73964140792657	61.961	0.79811	61.961	61.727	62.526	0					67	29	3	0	0	0	0.10409	2	15247	15247;15293		59.795	23.329	1	998080			54108	5355	30947	30948	66267;66268	66267					0.0357901484002241
VPYAGINI	8	Unmodified	_VPYAGINI_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.73956298828125	2	423.739628	845.464704	-0.42993	-0.00018218	0.51095	0.00021651	0.08102	3.4332E-05	423.7397354843322	61.88	0.65496	61.977	61.759	62.414	0.096985					55	23	4	0	0	0	0.083534	2	15258	15211;15258		63.394	26.928	1	889010			54109	5355	30947	30948	66269;66270	66270					0.0357901484002241
VPYAGINI	8	Unmodified	_VPYAGINI_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.7396240234375	2	423.739628	845.464704	-0.19559	-8.2879E-05	0.3684	0.0001561	0.17281	7.3226E-05	423.7396666639038	61.982	0.78641	61.973	61.728	62.514	-0.0085526					59	28	3	0	0	0	0.1843	2	15274	15219;15274		45.75	6.5019	1	956660			54110	5355	30947	30948	66271;66272	66272					0.0357901484002241
VPYEGVFRI	9	Unmodified	_VPYEGVFRI_					0	0	0		nc|ENSG00000157368|Q6ZMJ4-2|IL34;ENSG00000157368|ENST00000288098|IL34	nc|ENSG00000157368|Q6ZMJ4-2|IL34	nc|ENSG00000157368|Q6ZMJ4-2|IL34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2981567382812	2	540.297842	1078.58113	0.39378	0.00021276	-0.16997	-9.1832E-05	0.22381	0.00012092	540.2979560101553	61.876	2.1742	61.876	61.461	63.635	0					171	80	5	0	0	0	0.0013683	2	15241	15192;15241		118.07	78.111	1	16901000			54111	5300	30948	30949	66273;66274	66274					0.04498333339961391
VPYEGVFRI	9	Unmodified	_VPYEGVFRI_					0	0	0		nc|ENSG00000157368|Q6ZMJ4-2|IL34;ENSG00000157368|ENST00000288098|IL34	nc|ENSG00000157368|Q6ZMJ4-2|IL34	nc|ENSG00000157368|Q6ZMJ4-2|IL34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2982177734375	2	540.297842	1078.58113	0.072712	3.9286E-05	0.31906	0.00017239	0.39177	0.00021167	540.2982947558578	61.815	2.0115	61.912	61.354	63.366	0.096985					171	73	5	0	0	0	0.00045155	1	15213	15213		129.77	83.751	1	17906000			54112	5300	30948	30949	66275	66275					0.04498333339961391
VPYEGVFRI	9	Unmodified	_VPYEGVFRI_					0	0	0		nc|ENSG00000157368|Q6ZMJ4-2|IL34;ENSG00000157368|ENST00000288098|IL34	nc|ENSG00000157368|Q6ZMJ4-2|IL34	nc|ENSG00000157368|Q6ZMJ4-2|IL34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2982788085938	2	540.297842	1078.58113	0.28283	0.00015281	0.05088	2.749E-05	0.33371	0.0001803	540.2981583881833	61.89	2.5252	61.882	61.221	63.746	-0.0085526					188	92	5	0	0	0	0.0024096	1	15230	15230		106.94	66.983	1	17093000			54113	5300	30948	30949	66276	66276					0.04498333339961391
VPYEKGFAL	9	Unmodified	_VPYEKGFAL_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.8114013671875	2	512.279118	1022.54368	0.51072	0.00026163	0.3354	0.00017182	0.84612	0.00043345	512.2790890111122	51.172	0.718	51.172	50.818	51.536	0					74	24	4	0	0	0	0.099099	1	11930	11930		55.503	23.197	1	1902700			54114	2349	30949	30950	66277	66277					0.03331242074330021
VPYEKGFAL	9	Unmodified	_VPYEKGFAL_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.811279296875	2	512.279118	1022.54368	0.33239	0.00017028	0.33125	0.00016969	0.66364	0.00033997	512.2791569836936	51.139	1.0951	51.186	50.577	51.673	0.046577					61	26	4	0	0	0	0.1335	1	11926	11926		47.594	16.958	1	1952400			54115	2349	30949	30950	66278	66278					0.03331242074330021
VPYEKGFAL	9	Unmodified	_VPYEKGFAL_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.8112182617188	2	512.279118	1022.54368	0.34419	0.00017632	0.28935	0.00014823	0.63354	0.00032455	512.2791268952209	51.26	0.70147	51.269	50.965	51.666	0.0095634					75	26	4	0	0	0	0.075356	1	11940	11940		63.961	24.003	1	1899700			54116	2349	30949	30950	66279	66279					0.03331242074330021
VPYEPPEV	8	Unmodified	_VPYEPPEV_					0	0	0		nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;nc|ENSG00000141510|P04637-4|TP53;ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-8|TP53;nc|ENSG00000141510|P04637-9|TP53;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;nc|ENSG00000141510|P04637-7|TP53	nc|ENSG00000141510|P04637-5|TP53	nc|ENSG00000141510|P04637-5|TP53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.23443603515625	2	465.234376	928.454199	0.061313	2.8525E-05	0.077229	3.593E-05	0.13854	6.4455E-05	465.23436452365905	51.54	1.2611	51.54	51.006	52.267	0					134	46	4	0	0	0	0.042326	1	12049	12049		81.864	11.149	1	9916900			54117	4388	30950	30951	66280	66280					-0.012890126050479012
VPYEPPEV	8	Unmodified	_VPYEPPEV_					0	0	0		nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;nc|ENSG00000141510|P04637-4|TP53;ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-8|TP53;nc|ENSG00000141510|P04637-9|TP53;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;nc|ENSG00000141510|P04637-7|TP53	nc|ENSG00000141510|P04637-5|TP53	nc|ENSG00000141510|P04637-5|TP53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2342834472656	2	465.234376	928.454199	0.0089525	4.165E-06	0.16348	7.6055E-05	0.17243	8.022E-05	465.2344000684501	51.5	1.2393	51.546	51.011	52.25	0.046577					133	45	4	0	0	0	0.029359	1	12043	12043		89.427	11.442	1	10097000			54118	4388	30950	30951	66281	66281					-0.012890126050479012
VPYEPPEV	8	Unmodified	_VPYEPPEV_					0	0	0		nc|ENSG00000141510|P04637-5|TP53;nc|ENSG00000141510|P04637-6|TP53;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-3|TP53;nc|ENSG00000141510|P04637-4|TP53;ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-8|TP53;nc|ENSG00000141510|P04637-9|TP53;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;nc|ENSG00000141510|P04637-7|TP53	nc|ENSG00000141510|P04637-5|TP53	nc|ENSG00000141510|P04637-5|TP53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2344055175781	2	465.234376	928.454199	0.18031	8.3887E-05	-0.0097375	-4.5302E-06	0.17057	7.9357E-05	465.23430675346333	51.571	1.508	51.581	50.913	52.421	0.0095673					153	56	4	0	0	0	0.10069	1	12003	12003		60.39	9.5345	1	9828000			54119	4388	30950	30951	66282	66282					-0.012890126050479012
VPYGEFKSV	9	Unmodified	_VPYGEFKSV_					0	0	0		ENST00000572968.5_1_17:19282213-19283750:+|nuORF;ENST00000486905.1_1_17:19281885-19283261:+|nuORF;nc|ENSG00000166484|Q13164-3|MAPK7;ENST00000490660.2_1_17:19282213-19285121:+|nuORF;ENSG00000166484|ENST00000395604|MAPK7	ENST00000572968.5_1_17:19282213-19283750:+|nuORF	ENST00000572968.5_1_17:19282213-19283750:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8088989257812	2	513.26875	1024.52295	0.14396	7.389E-05	0.13831	7.0989E-05	0.28227	0.00014488	513.2683022511611	42.766	0.45931	42.852	42.648	43.107	0.085197					27	16	3	0	0	0	0.23216	1	9326	9326		12.873	2.0487	1	279540			54120	6086	30951	30952	66283	66283					0.011666516946434058
VPYGEFKSV	9	Unmodified	_VPYGEFKSV_					0	0	0		ENST00000572968.5_1_17:19282213-19283750:+|nuORF;ENST00000486905.1_1_17:19281885-19283261:+|nuORF;nc|ENSG00000166484|Q13164-3|MAPK7;ENST00000490660.2_1_17:19282213-19285121:+|nuORF;ENSG00000166484|ENST00000395604|MAPK7	ENST00000572968.5_1_17:19282213-19283750:+|nuORF	ENST00000572968.5_1_17:19282213-19283750:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.808837890625	2	513.26875	1024.52295	0.024156	1.2399E-05	-0.22284	-0.00011438	-0.19868	-0.00010198	513.2683638152027	42.658	0.48845	42.749	42.554	43.043	0.091358					30	17	2	0	0	0	0.22143	1	9301	9301		19.362	15.765	1	215210			54121	6086	30951	30952	66284	66284					0.011666516946434058
VPYGLSLEI	9	Unmodified	_VPYGLSLEI_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.779052734375	2	495.778951	989.543348	0.80959	0.00040138	-0.12771	-6.3314E-05	0.68189	0.00033807	495.77869131891237	78.267	1.2413	78.267	77.878	79.119	0					118	48	4	0	0	0	0.0061338	4	20228	20181;20228;20278;20324		85.357	21.12	1	1561700			54122	3371;10949	30952	30953	66285;66286;66287;66288	66286					0.04815822354464672
VPYGLSLEI	9	Unmodified	_VPYGLSLEI_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.77911376953125	2	495.778951	989.543348	0.69826	0.00034618	-0.043877	-2.1753E-05	0.65438	0.00032443	495.77877694492827	78.211	1.1913	78.269	77.898	79.089	0.058151					118	45	4	0	0	0	0.0061338	5	20218	20170;20218;20266;20318;20368		85.357	18.215	1	1434800			54123	3371;10949	30952	30953	66289;66290;66291;66292;66293	66290					0.04815822354464672
VPYGLSLEI	9	Unmodified	_VPYGLSLEI_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7791748046875	2	495.778951	989.543348	0.84539	0.00041913	-0.15809	-7.8376E-05	0.6873	0.00034075	495.7786705881051	78.273	1.071	78.243	77.898	78.969	-0.030434					109	41	4	0	0	0	0.0061338	5	20244	20194;20244;20292;20337;20420		85.357	18.013	1	1349400			54124	3371;10949	30952	30953	66294;66295;66296;66297;66298	66295					0.04815822354464672
VPYIGIVTI	9	Unmodified	_VPYIGIVTI_					0	0	0		nc|ENSG00000140612|P67812-2|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;ENST00000560409.5_1_15:85213252-85222467:-|nuORF;ENST00000558924.1_1_15:85213252-85214072:-|nuORF;ENST00000560266.5_1_15:85213252-85223982:-|nuORF	nc|ENSG00000140612|P67812-2|SEC11A	nc|ENSG00000140612|P67812-2|SEC11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.8007507324219	2	487.799686	973.584819	0.35834	0.0001748	-0.17311	-8.4443E-05	0.18523	9.0356E-05	487.80038505754413	82.127	2.3942	82.127	81.769	84.163	0					254	91	3	0	0	0	2.4965E-07	6	21426	21380;21426;21472;21488;21534;21585		170.4	76.514	1	100190000			54125	4324	30953	30954	66299;66300;66301;66302;66303;66304	66300					0.09697003113808478
VPYIGIVTI	9	Unmodified	_VPYIGIVTI_					0	0	0		nc|ENSG00000140612|P67812-2|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;ENST00000560409.5_1_15:85213252-85222467:-|nuORF;ENST00000558924.1_1_15:85213252-85214072:-|nuORF;ENST00000560266.5_1_15:85213252-85223982:-|nuORF	nc|ENSG00000140612|P67812-2|SEC11A	nc|ENSG00000140612|P67812-2|SEC11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2489318847656	2	487.799686	973.584819	0.38852	0.00018952	-0.047014	-2.2933E-05	0.34151	0.00016659	487.7995236339739	89.223	1.1624	89.223	88.514	89.677	0					81	57	2	0	0	0	0.21905	1	23517	23517		23.148	5.0134	1	149040			54126	4324	30953	30954	66305	66305					0.09697003113808478
VPYIGIVTI	9	Unmodified	_VPYIGIVTI_					0	0	0		nc|ENSG00000140612|P67812-2|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;ENST00000560409.5_1_15:85213252-85222467:-|nuORF;ENST00000558924.1_1_15:85213252-85214072:-|nuORF;ENST00000560266.5_1_15:85213252-85223982:-|nuORF	nc|ENSG00000140612|P67812-2|SEC11A	nc|ENSG00000140612|P67812-2|SEC11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.8000793457031	2	487.799686	973.584819	0.49058	0.0002393	0.048322	2.3571E-05	0.5389	0.00026287	487.7996242790243	84.604	2.5069	84.604	84.376	86.883	0					196	96	3	0	0	0	0.089551	1	22168	22168		36.044	1.9418	1	504100			54127	4324	30953	30954	66306	66306					0.09697003113808478
VPYIGIVTI	9	Unmodified	_VPYIGIVTI_					0	0	0		nc|ENSG00000140612|P67812-2|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;ENST00000560409.5_1_15:85213252-85222467:-|nuORF;ENST00000558924.1_1_15:85213252-85214072:-|nuORF;ENST00000560266.5_1_15:85213252-85223982:-|nuORF	nc|ENSG00000140612|P67812-2|SEC11A	nc|ENSG00000140612|P67812-2|SEC11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2489929199219	2	487.799686	973.584819	0.32124	0.0001567	-0.19295	-9.4122E-05	0.12829	6.2578E-05	487.79946718871736	90.72	1.2828	90.72	89.677	90.96	0					137	105	2	0	0	0	0.24311	1	24037	24037		16.942	2.104	1	158940			54128	4324	30953	30954	66307	66307					0.09697003113808478
VPYIGIVTI	9	Unmodified	_VPYIGIVTI_					0	0	0		nc|ENSG00000140612|P67812-2|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;ENST00000560409.5_1_15:85213252-85222467:-|nuORF;ENST00000558924.1_1_15:85213252-85214072:-|nuORF;ENST00000560266.5_1_15:85213252-85223982:-|nuORF	nc|ENSG00000140612|P67812-2|SEC11A	nc|ENSG00000140612|P67812-2|SEC11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.8009948730469	2	487.799686	973.584819	0.21101	0.00010293	-0.12251	-5.9762E-05	0.088493	4.3167E-05	487.80042117279817	82.048	4.3623	82.117	81.675	86.037	0.068993					444	173	5	0	0	0	7.6375E-05	7	21425	21339;21380;21425;21466;21512;21553;21762		144.66	54.804	1	100670000			54129	4324	30953	30954	66308;66309;66310;66311;66312;66313;66314	66310					0.09697003113808478
VPYIGIVTI	9	Unmodified	_VPYIGIVTI_					0	0	0		nc|ENSG00000140612|P67812-2|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;ENST00000560409.5_1_15:85213252-85222467:-|nuORF;ENST00000558924.1_1_15:85213252-85214072:-|nuORF;ENST00000560266.5_1_15:85213252-85223982:-|nuORF	nc|ENSG00000140612|P67812-2|SEC11A	nc|ENSG00000140612|P67812-2|SEC11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.808837890625	2	487.799686	973.584819	0.2627	0.00012814	0.16675	8.1338E-05	0.42944	0.00020948	487.7997585180946	92.557	0.31375	92.647	92.45	92.764	0.089203					30	19	2	0	0	0	0.24311	1	24647	24647		16.942	6.1184	1	124660			54130	4324	30953	30954	66315	66315					0.09697003113808478
VPYIGIVTI	9	Unmodified	_VPYIGIVTI_					0	0	0		nc|ENSG00000140612|P67812-2|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;ENST00000560409.5_1_15:85213252-85222467:-|nuORF;ENST00000558924.1_1_15:85213252-85214072:-|nuORF;ENST00000560266.5_1_15:85213252-85223982:-|nuORF	nc|ENSG00000140612|P67812-2|SEC11A	nc|ENSG00000140612|P67812-2|SEC11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2491455078125	2	487.799686	973.584819	0.31966	0.00015593	-0.3942	-0.00019229	-0.074538	-3.6359E-05	487.79935184068523	90.681	0.30901	90.772	90.543	90.852	0.090675					34	24	2	0	0	0	0.21905	1	24001	24001		23.148	1.4018	1	183410			54131	4324	30953	30954	66316	66316					0.09697003113808478
VPYIGIVTI	9	Unmodified	_VPYIGIVTI_					0	0	0		nc|ENSG00000140612|P67812-2|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;ENST00000560409.5_1_15:85213252-85222467:-|nuORF;ENST00000558924.1_1_15:85213252-85214072:-|nuORF;ENST00000560266.5_1_15:85213252-85223982:-|nuORF	nc|ENSG00000140612|P67812-2|SEC11A	nc|ENSG00000140612|P67812-2|SEC11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7999267578125	2	487.799686	973.584819	0.39464	0.0001925	-0.24453	-0.00011928	0.1501	7.3221E-05	487.80030926365464	82.233	8.1972	82.209	81.685	89.883	-0.02404					731	370	4	0	0	0	0.0011499	8	21376	21376;21423;21463;21510;21557;21801;21942;23183		120.86	81.864	1	128170000			54132	4324	30953	30954	66317;66318;66319;66320;66321;66322;66323;66324	66317					0.09697003113808478
VPYIGIVTI	9	Unmodified	_VPYIGIVTI_					0	0	0		nc|ENSG00000140612|P67812-2|SEC11A;ENSG00000140612|ENST00000268220|SEC11A;ENST00000560409.5_1_15:85213252-85222467:-|nuORF;ENST00000558924.1_1_15:85213252-85214072:-|nuORF;ENST00000560266.5_1_15:85213252-85223982:-|nuORF	nc|ENSG00000140612|P67812-2|SEC11A	nc|ENSG00000140612|P67812-2|SEC11A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	487.799686	973.584819	0.35496	0.00017315	-0.28744	-0.00014021	0.067513	3.2933E-05	487.79949209481225	88.835	0.772	88.925	88.395	89.167	0.090279	-0.14904	-0.0001437	NaN	23.148	46	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171980			54133	4324	30953	30954							0.09697003113808478
VPYLFKKV	8	Unmodified	_VPYLFKKV_					0	0	0		ENST00000479978.5_1_22:41615341-41623356:+|nuORF;nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2	ENST00000479978.5_1_22:41615341-41623356:+|nuORF	ENST00000479978.5_1_22:41615341-41623356:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.309814453125	2	497.310221	992.605889	0.26402	0.0001313	-0.46292	-0.00023022	-0.1989	-9.8913E-05	497.3096668714391	42.006	0.97763	42.006	41.809	42.786	0					57	35	3	0	0	0	0.24743	1	9093	9093		50.855	36.273	1	1700300			54134	1587	30954	30955	66325	66325					0.1092901321331965
VPYLFKKV	8	Unmodified	_VPYLFKKV_					0	0	0		ENST00000479978.5_1_22:41615341-41623356:+|nuORF;nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2	ENST00000479978.5_1_22:41615341-41623356:+|nuORF	ENST00000479978.5_1_22:41615341-41623356:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.30963134765625	2	497.310221	992.605889	0.42835	0.00021303	-1.084	-0.0005391	-0.65567	-0.00032607	497.30943338947145	41.664	1.0514	41.754	41.658	42.709	0.090248					58	41	2	0	0	0	0.16018	1	9059	9059		67.344	44.195	1	1809100			54135	1587	30954	30955	66326	66326					0.1092901321331965
VPYLFKKV	8	Unmodified	_VPYLFKKV_					0	0	0		ENST00000479978.5_1_22:41615341-41623356:+|nuORF;nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2	ENST00000479978.5_1_22:41615341-41623356:+|nuORF	ENST00000479978.5_1_22:41615341-41623356:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.3098449707031	2	497.310221	992.605889	0.65562	0.00032605	-0.97617	-0.00048546	-0.32055	-0.00015941	497.30944666565335	41.666	0.79004	41.762	41.6	42.39	0.096626					48	30	2	0	0	0	0.16018	1	9048	9048		67.344	52.762	1	2404100			54136	1587	30954	30955	66327	66327					0.1092901321331965
VPYLKIFTV	9	Unmodified	_VPYLKIFTV_					0	0	0		nc|ENSG00000144048|O75319-2|DUSP11;ENSG00000144048|ENST00000272444|DUSP11;nc|ENSG00000144048|O75319-1|DUSP11	nc|ENSG00000144048|O75319-2|DUSP11	nc|ENSG00000144048|O75319-2|DUSP11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.771728515625	2	540.328611	1078.64267	0.55551	0.00030016	0.55087	0.00029765	1.1064	0.00059781	540.3282815831444	72.18	1.5513	72.18	71.612	73.163	0					131	56	4	0	0	0	0.059987	1	18393	18393		70.332	43.448	1	799570			54137	4562	30955	30956	66328	66328					0.10649265039205602
VPYLKIFTV	9	Unmodified	_VPYLKIFTV_					0	0	0		nc|ENSG00000144048|O75319-2|DUSP11;ENSG00000144048|ENST00000272444|DUSP11;nc|ENSG00000144048|O75319-1|DUSP11	nc|ENSG00000144048|O75319-2|DUSP11	nc|ENSG00000144048|O75319-2|DUSP11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7716064453125	2	540.328611	1078.64267	0.61112	0.00033021	0.4322	0.00023353	1.0433	0.00056374	540.3283025459632	72.1	1.4377	72.156	71.513	72.951	0.056572					130	52	4	0	0	0	0.059987	1	18348	18348		70.332	41.845	1	847630			54138	4562	30955	30956	66329	66329					0.10649265039205602
VPYLKIFTV	9	Unmodified	_VPYLKIFTV_					0	0	0		nc|ENSG00000144048|O75319-2|DUSP11;ENSG00000144048|ENST00000272444|DUSP11;nc|ENSG00000144048|O75319-1|DUSP11	nc|ENSG00000144048|O75319-2|DUSP11	nc|ENSG00000144048|O75319-2|DUSP11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.771484375	2	540.328611	1078.64267	0.64123	0.00034648	0.46061	0.00024888	1.1018	0.00059535	540.3281964561655	72.261	1.7866	72.234	71.506	73.293	-0.027275					138	63	4	0	0	0	0.067563	1	18359	18359		57.722	32.323	1	950650			54139	4562	30955	30956	66330	66330					0.10649265039205602
VPYLLPLV	8	Unmodified	_VPYLLPLV_					0	0	0		nc|nan|Q9H0W9-3|C11orf54;nc|nan|Q9H0W9-2|C11orf54;ENSG00000182919|ENST00000354421|C11orf54	nc|nan|Q9H0W9-3|C11orf54	nc|nan|Q9H0W9-3|C11orf54	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.6080322265625	2	457.291497	912.568441	0.20566	9.4046E-05	0.4161	0.00019028	0.62176	0.00028433	457.2911658699714	89.146	0.73363	89.146	88.844	89.578	0					77	36	3	0	0	0	0.31651	1	23602	23602		17.087	0	1	319990			54140	7333	30956	30957	66331	66331					0.10865921947709012
VPYLQRNAL	9	Unmodified	_VPYLQRNAL_					0	0	0		ENSG00000147050|ENST00000611820|KDM6A;nc|ENSG00000147050|O15550|KDM6A	ENSG00000147050|ENST00000611820|KDM6A	ENSG00000147050|ENST00000611820|KDM6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2794189453125	2	537.308741	1072.60293	0.58211	0.00031277	0.71858	0.0003861	1.3007	0.00069887	537.3092882257408	45.119	0.51989	45.119	44.771	45.291	0					25	18	2	0	0	0	0.1939	1	10052	10052		30.637	13.694	1	186170			54141	4742	30957	30958	66332	66332					0.06953138088488231
VPYLRDLGL	9	Unmodified	_VPYLRDLGL_					0	0	0		nc|ENSG00000160179|P45844-7|ABCG1;nc|ENSG00000160179|P45844-6|ABCG1;nc|ENSG00000160179|P45844-5|ABCG1;ENSG00000160179|ENST00000398449|ABCG1;nc|ENSG00000160179|P45844-3|ABCG1;nc|ENSG00000160179|P45844-2|ABCG1;nc|ENSG00000160179|P45844|ABCG1;ENST00000467818.1_1_21:43696971-43706199:+|nuORF;ENST00000472587.5_1_21:43696971-43716499:+|nuORF;nc|ENSG00000160179|P45844-8|ABCG1	nc|ENSG00000160179|P45844-7|ABCG1	nc|ENSG00000160179|P45844-7|ABCG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3057861328125	2	523.305667	1044.59678	0.65498	0.00034275	-0.35447	-0.0001855	0.30051	0.00015726	523.3054236019078	66.314	1.0375	66.314	65.899	66.937	0					131	36	5	0	0	0	0.0046246	2	16582	16534;16582		89.401	37.771	1	3461700			54142	5441	30958	30959	66333;66334	66334					0.07626619856978323
VPYLRDLGL	9	Unmodified	_VPYLRDLGL_					0	0	0		nc|ENSG00000160179|P45844-7|ABCG1;nc|ENSG00000160179|P45844-6|ABCG1;nc|ENSG00000160179|P45844-5|ABCG1;ENSG00000160179|ENST00000398449|ABCG1;nc|ENSG00000160179|P45844-3|ABCG1;nc|ENSG00000160179|P45844-2|ABCG1;nc|ENSG00000160179|P45844|ABCG1;ENST00000467818.1_1_21:43696971-43706199:+|nuORF;ENST00000472587.5_1_21:43696971-43716499:+|nuORF;nc|ENSG00000160179|P45844-8|ABCG1	nc|ENSG00000160179|P45844-7|ABCG1	nc|ENSG00000160179|P45844-7|ABCG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3058471679688	2	523.305667	1044.59678	0.603	0.00031555	-0.41911	-0.00021932	0.18389	9.6229E-05	523.3054356533936	66.167	1.0704	66.25	65.806	66.877	0.083824					121	38	4	0	0	0	0.0098873	1	16535	16535		79.596	31.848	1	3804000			54143	5441	30958	30959	66335	66335					0.07626619856978323
VPYLRDLGL	9	Unmodified	_VPYLRDLGL_					0	0	0		nc|ENSG00000160179|P45844-7|ABCG1;nc|ENSG00000160179|P45844-6|ABCG1;nc|ENSG00000160179|P45844-5|ABCG1;ENSG00000160179|ENST00000398449|ABCG1;nc|ENSG00000160179|P45844-3|ABCG1;nc|ENSG00000160179|P45844-2|ABCG1;nc|ENSG00000160179|P45844|ABCG1;ENST00000467818.1_1_21:43696971-43706199:+|nuORF;ENST00000472587.5_1_21:43696971-43716499:+|nuORF;nc|ENSG00000160179|P45844-8|ABCG1	nc|ENSG00000160179|P45844-7|ABCG1	nc|ENSG00000160179|P45844-7|ABCG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3058471679688	2	523.305667	1044.59678	0.47685	0.00024954	-0.26257	-0.00013741	0.21428	0.00011213	523.3055065854513	66.278	1.0939	66.264	65.859	66.953	-0.013588					124	39	4	0	0	0	0.0098873	3	16565	16518;16565;16612		79.596	30.042	1	3332900			54144	5441	30958	30959	66336;66337;66338	66337					0.07626619856978323
VPYLSRKL	8	Unmodified	_VPYLSRKL_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.3028564453125	2	488.302927	974.591301	-0.25448	-0.00012426	0.35611	0.00017389	0.10163	4.9626E-05	488.30298754231944	35.381	0.85251	35.381	34.892	35.745	0					78	30	4	0	0	0	0.10249	1	7061	7061		60.074	14.374	1	960430			54145	2318	30959	30960	66339	66339					0.10298941065184408
VPYLSRKL	8	Unmodified	_VPYLSRKL_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.302734375	2	488.302927	974.591301	-0.26619	-0.00012998	0.33191	0.00016207	0.065721	3.2092E-05	488.30292539769323	35.281	1.0021	35.357	34.814	35.816	0.075306					84	35	4	0	0	0	0.15072	2	7042	6997;7042		51.63	16.144	1	983500			54146	2318	30959	30960	66340;66341	66341					0.10298941065184408
VPYLSRKL	8	Unmodified	_VPYLSRKL_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.3028259277344	2	488.302927	974.591301	-0.47818	-0.0002335	0.5646	0.0002757	0.086422	4.22E-05	488.30306096864246	35.218	0.85447	35.295	34.807	35.662	0.077377					79	30	4	0	0	0	0.15072	2	7001	7001;7051		51.63	17.228	1	989310			54147	2318	30959	30960	66342;66343	66342					0.10298941065184408
VPYLVGQVV	9	Unmodified	_VPYLVGQVV_					0	0	0		ENST00000494399.5_1_1:45478966-45479784:+|nuORF;ENSG00000126088|ENST00000246337|UROD	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.2900390625	2	487.289485	972.564418	0.3099	0.00015101	0.13843	6.7458E-05	0.44833	0.00021847	487.28976588086925	68.486	3.0638	68.486	67.647	70.711	0					268	111	6	0	0	0	0.0046213	7	17245	17199;17245;17294;17340;17392;17578;17648		89.427	53.31	1	43404000			54148	3257	30960	30961	66344;66345;66346;66347;66348;66349;66350	66345					0.07703832454001258
VPYLVGQVV	9	Unmodified	_VPYLVGQVV_					0	0	0		ENST00000494399.5_1_1:45478966-45479784:+|nuORF;ENSG00000126088|ENST00000246337|UROD	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2899475097656	2	487.289485	972.564418	0.21058	0.00010262	0.15131	7.373E-05	0.36189	0.00017635	487.28979317208456	68.415	2.7822	68.487	67.919	70.701	0.071938					258	100	7	0	0	0	0.0046213	7	17217	17171;17217;17266;17310;17357;17555;17631		89.427	57.31	1	45221000			54149	3257	30960	30961	66351;66352;66353;66354;66355;66356;66357	66352					0.07703832454001258
VPYLVGQVV	9	Unmodified	_VPYLVGQVV_					0	0	0		ENST00000494399.5_1_1:45478966-45479784:+|nuORF;ENSG00000126088|ENST00000246337|UROD	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.2900390625	2	487.289485	972.564418	0.3673	0.00017898	-0.040816	-1.9889E-05	0.32649	0.00015909	487.2896867246107	68.476	3.5244	68.456	67.669	71.193	-0.019157					271	126	6	0	0	0	0.0046213	6	17281	17187;17238;17281;17334;17382;17624		89.427	52.585	1	44004000			54150	3257	30960	30961	66358;66359;66360;66361;66362;66363	66360					0.07703832454001258
VPYNKLQVI	9	Unmodified	_VPYNKLQVI_					0	0	0		ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.321533203125	2	537.321317	1072.62808	0.5823	0.00031288	-0.29668	-0.00015941	0.28563	0.00015347	537.321045698645	48.943	0.7141	48.943	48.694	49.408	0					66	25	3	0	0	0	0.00056175	1	11212	11212		128.37	76.097	1	3810700			54151	7289	30961	30962	66364	66364					0.09467192891065679
VPYNKLQVI	9	Unmodified	_VPYNKLQVI_					0	0	0		ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.3214111328125	2	537.321317	1072.62808	0.41653	0.00022381	-0.26549	-0.00014265	0.15104	8.1157E-05	537.3211104029966	48.985	0.7439	49.029	48.716	49.46	0.044891					78	26	4	0	0	0	0.0028127	2	11251	11205;11251		103.75	67.621	1	4112600			54152	7289	30961	30962	66365;66366	66366					0.09467192891065679
VPYNKLQVI	9	Unmodified	_VPYNKLQVI_					0	0	0		ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.3214721679688	2	537.321317	1072.62808	0.36874	0.00019813	0.10875	5.8436E-05	0.4775	0.00025657	537.3211606996067	48.903	0.69937	48.935	48.684	49.383	0.032043					77	24	5	0	0	0	0.0028127	2	11239	11192;11239		103.75	63.791	1	4527500			54153	7289	30961	30962	66367;66368	66368					0.09467192891065679
VPYNNLLIE	9	Unmodified	_VPYNNLLIE_					0	0	0		nc|ENSG00000116833|O00482-3|NR5A2;nc|ENSG00000116833|O00482-4|NR5A2;nc|ENSG00000116833|O00482-2|NR5A2;ENSG00000116833|ENST00000367362|NR5A2	nc|ENSG00000116833|O00482-3|NR5A2	nc|ENSG00000116833|O00482-3|NR5A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2680053710938	2	537.795132	1073.57571	0.45679	0.00024566	2.7226	0.0014642	3.1794	0.0017099	538.2982561462134	48.821	0.55089	48.853	48.522	49.072	0.032043					22	19	2	0	0	0	0.090484	1	11170	11170		54.774	24.137	1	391080			54154	2757	30962	30963	66369	66369					0.0418660975747116
VPYPLPKI	8	Unmodified	_VPYPLPKI_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;ENST00000525401.1_1_17:45663528-45663807:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.7891540527344	2	463.789121	925.56369	0.10743	4.9825E-05	0.16769	7.7773E-05	0.27512	0.0001276	463.789146656287	56.971	2.1174	56.971	56.241	58.358	0					204	77	5	0	0	0	0.0083969	5	13758	13575;13617;13661;13711;13758		120.86	64.316	1	11900000			54155	4363	30963	30964	66370;66371;66372;66373;66374	66374					0.09793037804922733
VPYPLPKI	8	Unmodified	_VPYPLPKI_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;ENST00000525401.1_1_17:45663528-45663807:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7890930175781	2	463.789121	925.56369	0.13051	6.0528E-05	0.14848	6.8864E-05	0.27899	0.00012939	463.7891412340485	56.829	2.1335	56.907	56.247	58.38	0.078674					200	78	4	0	0	0	0.016422	7	13635	13538;13546;13588;13635;13685;13736;13786		106.85	55.732	1	12479000			54156	4363	30963	30964	66375;66376;66377;66378;66379;66380;66381	66378					0.09793037804922733
VPYPLPKI	8	Unmodified	_VPYPLPKI_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;ENST00000525401.1_1_17:45663528-45663807:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7893981933594	2	463.789121	925.56369	0.44887	0.00020818	-0.10551	-4.8933E-05	0.34337	0.00015925	463.78899214457215	57.012	1.79	56.993	56.213	58.003	-0.019081					180	65	4	0	0	0	0.016422	6	13612	13564;13612;13654;13700;13750;13803		106.85	50.304	1	11384000			54157	4363	30963	30964	66382;66383;66384;66385;66386;66387	66383					0.09793037804922733
VPYPLPKIDLI	11	Unmodified	_VPYPLPKIDLI_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;ENST00000525401.1_1_17:45663528-45663807:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3867797851562	2	634.386657	1266.75876	0.45509	0.0002887	-0.26896	-0.00017062	0.18613	0.00011808	634.3864090970044	77.075	0.66537	77.075	76.643	77.308	0					63	24	3	0	0	0	0.12256	1	19834	19834		46.022	36.478	1	335640			54158	4363	30964	30965	66388	66388					0.1360516381926118
VPYPLPKIDLI	11	Unmodified	_VPYPLPKIDLI_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;ENST00000525401.1_1_17:45663528-45663807:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3867797851562	2	634.386657	1266.75876	0.43524	0.00027611	-0.34566	-0.00021928	0.089574	5.6825E-05	634.3864416422567	76.967	0.69279	77.023	76.621	77.314	0.055412					61	24	3	0	0	0	0.081251	1	19807	19807		46.022	37.277	1	357300			54159	4363	30964	30965	66389	66389					0.1360516381926118
VPYPLPKIDLI	11	Unmodified	_VPYPLPKIDLI_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;ENST00000525401.1_1_17:45663528-45663807:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3869018554688	2	634.386657	1266.75876	0.79075	0.00050164	-0.58398	-0.00037047	0.20677	0.00013117	634.386309613648	77.026	0.74737	76.995	76.599	77.346	-0.031334					66	27	3	0	0	0	0.081251	1	19874	19874		46.022	37.277	1	328410			54160	4363	30964	30965	66390	66390					0.1360516381926118
VPYPRIHFPL	10	Unmodified	_VPYPRIHFPL_					0	0	0		ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000442868.1_1_1:202822165-202825009:-|nuORF;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000152086|ENST00000312988|TUBA3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.57269287109375	3	413.572998	1237.69716	-0.083221	-3.4418E-05	-0.068861	-2.8479E-05	-0.15208	-6.2897E-05	413.57286328080016	61.4	0.95071	61.497	61.169	62.12	0.096985					66	34	3	0	0	0	0.25422	1	15124	15124		26.021	11.183	1	450020			54161	4999;6187	30965	30966	66391	66391					0.08782276910642395
VPYPRIHFPL	10	Unmodified	_VPYPRIHFPL_					0	0	0		ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000442868.1_1_1:202822165-202825009:-|nuORF;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000152086|ENST00000312988|TUBA3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5731201171875	3	413.572998	1237.69716	-0.085497	-3.5359E-05	0.0305	1.2614E-05	-0.054997	-2.2745E-05	413.5729411314528	61.515	0.84541	61.506	61.162	62.008	-0.0094566					71	30	4	0	0	0	0.20497	1	15157	15157		32.037	19.81	1	354990			54162	4999;6187	30965	30966	66392	66392					0.08782276910642395
VPYPRIHFPL	10	Unmodified	_VPYPRIHFPL_					0	0	0		ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000123416|P68363-2|TUBA1B;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000442868.1_1_1:202822165-202825009:-|nuORF;ENSG00000183785|ENST00000330423|TUBA8;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000152086|ENST00000312988|TUBA3E	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	413.572998	1237.69716	-0.19106	-7.9019E-05	0.082891	3.4281E-05	-0.10817	-4.4738E-05	413.5730417403736	61.541	0.88438	61.541	61.254	62.138	0	0.026413	7.713E-05	NaN	32.037	65	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336810			54163	4999;6187	30965	30966							0.08782276910642395
VPYPVTTTV	9	Unmodified	_VPYPVTTTV_					0	0	0		nc|ENSG00000135218|P16671-2|CD36;nc|ENSG00000135218|P16671-3|CD36;ENSG00000135218|ENST00000447544|CD36	nc|ENSG00000135218|P16671-2|CD36	nc|ENSG00000135218|P16671-2|CD36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.771240234375	2	488.771126	975.527698	0.54268	0.00026525	-0.083053	-4.0594E-05	0.45963	0.00022465	488.7710063485066	53.86	0.61956	53.86	53.648	54.268	0					54	22	3	0	0	0	0.025459	1	12766	12766		77.984	41.94	1	730600			54164	3852	30966	30967	66393	66393					0.03895535837409625
VPYPVTTTV	9	Unmodified	_VPYPVTTTV_					0	0	0		nc|ENSG00000135218|P16671-2|CD36;nc|ENSG00000135218|P16671-3|CD36;ENSG00000135218|ENST00000447544|CD36	nc|ENSG00000135218|P16671-2|CD36	nc|ENSG00000135218|P16671-2|CD36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.77117919921875	2	488.771126	975.527698	0.442	0.00021604	0.13903	6.7955E-05	0.58103	0.00028399	488.771062697419	53.897	0.62665	53.887	53.662	54.289	-0.0096054					55	22	4	0	0	0	0.037693	1	12777	12777		57.471	30.588	1	905040			54165	3852	30966	30967	66394	66394					0.03895535837409625
VPYRIIANI	9	Unmodified	_VPYRIIANI_					0	0	0			REV__ENST00000564318.1_1_16:75573894-75575375:-|nuORF	REV__ENST00000564318.1_1_16:75573894-75575375:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7979736328125	2	529.821484	1057.62842	0.70845	0.00037535	0.5801	0.00030735	1.2886	0.0006827	529.8214779292073	64.025	0.6436	64.016	63.745	64.389	-0.0095291					51	23	3	0	0	0	0.25066	1	15987	15987		11.64	4.3511	1	605300	+		54166	18980	30967	30968	66395	66395					0.10190612610949756
VPYRLNEI	8	Unmodified	_VPYRLNEI_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2818603515625	2	502.282192	1002.54983	0.12942	6.5004E-05	-0.50882	-0.00025557	-0.3794	-0.00019057	502.2818978678429	46.445	0.59479	46.445	46.194	46.789	0					48	21	3	0	0	0	0.069188	2	10464	10464;10509		69.105	35.002	1	1452200			54167	5600	30968	30969	66396;66397	66396					0.048657603058586574
VPYRLNEI	8	Unmodified	_VPYRLNEI_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2821044921875	2	502.282192	1002.54983	0.23929	0.00012019	-0.82044	-0.00041209	-0.58116	-0.00029191	502.28180167823575	46.272	0.56953	46.332	46.015	46.585	0.059837					51	20	3	0	0	0	0.029711	2	10395	10395;10459		88.954	48.997	1	1534400			54168	5600	30968	30969	66398;66399	66398					0.048657603058586574
VPYRLNEI	8	Unmodified	_VPYRLNEI_					0	0	0		nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL	nc|ENSG00000162688|P35573-2|AGL	nc|ENSG00000162688|P35573-2|AGL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.28167724609375	2	502.282192	1002.54983	0.21916	0.00011008	-0.63016	-0.00031652	-0.411	-0.00020644	502.2819175063442	46.296	0.64941	46.361	46.043	46.692	0.065048					60	23	3	0	0	0	0.035151	2	10454	10386;10454		85.272	34.87	1	1520700			54169	5600	30968	30969	66400;66401	66401					0.048657603058586574
VPYSKPITTV	10	Unmodified	_VPYSKPITTV_					0	0	0		ENST00000603865.1_1_11:75508177-75511550:+|nuORF;ENST00000603363.5_1_11:75507249-75511550:+|nuORF;nc|ENSG00000062282|Q96PD7-2|DGAT2;ENSG00000062282|ENST00000228027|DGAT2	ENST00000603865.1_1_11:75508177-75511550:+|nuORF	ENST00000603865.1_1_11:75508177-75511550:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3037109375	2	552.818607	1103.62266	0.22186	0.00012265	-0.29219	-0.00016153	-0.070333	-3.8881E-05	552.8182207842361	39.971	0.33077	39.971	39.831	40.161	0					20	11	2	0	0	0	0.29637	1	8466	8466		20.871	3.7582	1	233350			54170	765	30969	30970	66402	66402					0.07499469308595508
VPYSKPITTV	10	Unmodified	_VPYSKPITTV_					0	0	0		ENST00000603865.1_1_11:75508177-75511550:+|nuORF;ENST00000603363.5_1_11:75507249-75511550:+|nuORF;nc|ENSG00000062282|Q96PD7-2|DGAT2;ENSG00000062282|ENST00000228027|DGAT2	ENST00000603865.1_1_11:75508177-75511550:+|nuORF	ENST00000603865.1_1_11:75508177-75511550:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	552.818607	1103.62266	0.36017	0.00019911	-0.36524	-0.00020191	-0.0050665	-2.8009E-06	552.8184100165378	39.828	0.38157	39.927	39.736	40.118	0.099407	-0.021045	8.7925E-05	NaN	20.871	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231530			54171	765	30969	30970							0.07499469308595508
VPYSRALIM	9	Oxidation (M)	_VPYSRALIM(Oxidation (M))_		VPYSRALIM(1)		VPYSRALIM(100)	0	0	1		ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7837524414062	2	533.291702	1064.56885	0.26264	0.00014006	0.75327	0.00040171	1.0159	0.00054177	533.2920914023323	42.238	0.88364	42.238	41.932	42.816	0					76	31	3	0	0	0	0.003317	3	9233	9203;9233;9278		99.755	59.806	1	6870800			54172	4937	30970	30971	66403;66404;66405	66404		610			0.03914973605242267
VPYSRALIM	9	Oxidation (M)	_VPYSRALIM(Oxidation (M))_		VPYSRALIM(1)		VPYSRALIM(86)	0	0	1		ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2922973632812	2	533.291702	1064.56885	0.47479	0.0002532	0.38237	0.00020391	0.85715	0.00045711	533.291976227628	42.049	0.879	42.134	41.876	42.755	0.085201					71	31	3	0	0	0	0.0054984	3	9154	9154;9191;9212		86.332	46.382	1	5438600			54173	4937	30970	30971	66406;66407;66408	66406		610			0.03914973605242267
VPYSRALIM	9	Oxidation (M)	_VPYSRALIM(Oxidation (M))_		VPYSRALIM(1)		VPYSRALIM(96)	0	0	1		ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2922973632812	2	533.291702	1064.56885	0.65138	0.00034738	0.30709	0.00016377	0.95847	0.00051114	533.2919212685782	41.983	0.82671	42.075	41.837	42.664	0.09256					76	28	4	0	0	0	0.0037449	3	9114	9114;9168;9212		96.367	56.417	1	6010600			54174	4937	30970	30971	66409;66410;66411	66409		610			0.03914973605242267
VPYSTSASLYI	11	Unmodified	_VPYSTSASLYI_					0	0	0		ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1;nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.8109741210938	2	600.810979	1199.6074	0.51724	0.00031077	-0.10502	-6.3096E-05	0.41223	0.00024767	600.8108810166839	66.737	0.62383	66.737	66.482	67.106	0					49	21	3	0	0	0	0.055577	1	16732	16732		51.63	30.093	1	514930			54175	756	30971	30972	66412	66412					0.015585577207730239
VPYSTSASLYI	11	Unmodified	_VPYSTSASLYI_					0	0	0		ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1;nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.8113403320312	2	600.810979	1199.6074	0.50881	0.0003057	-0.15668	-9.4133E-05	0.35213	0.00021156	600.8108646380397	66.626	0.75178	66.71	66.467	67.219	0.083832					57	26	3	0	0	0	0.034506	2	16681	16681;16741		57.722	36.185	1	522310			54176	756	30971	30972	66413;66414	66413					0.015585577207730239
VPYSTSASLYI	11	Unmodified	_VPYSTSASLYI_					0	0	0		ENST00000544418.1_1_12:24987681-25055019:-|nuORF;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1;nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	ENST00000544418.1_1_12:24987681-25055019:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8112182617188	2	600.810979	1199.6074	0.22728	0.00013655	0.38065	0.0002287	0.60793	0.00036525	600.8110514859367	66.821	0.75023	66.808	66.433	67.184	-0.013596					58	26	3	0	0	0	0.076087	2	16716	16716;16761		45.7	20.3	1	580850			54177	756	30971	30972	66415;66416	66415					0.015585577207730239
VPYTIHLL	8	Unmodified	_VPYTIHLL_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.28533935546875	2	478.284203	954.553853	0.32601	0.00015593	0.30474	0.00014575	0.63076	0.00030168	478.2844069149127	68.49	0.55865	68.471	68.284	68.843	-0.01915					28	19	2	0	0	0	0.42446	1	17236	17236		14.582	0	1	409840			54178	1225	30972	30973	66417	66417					0.07475849799561729
VQAARPWEF	9	Unmodified	_VQAARPWEF_					0	0	0		ENSG00000119227|ENST00000412723|PIGZ	ENSG00000119227|ENST00000412723|PIGZ	ENSG00000119227|ENST00000412723|PIGZ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.298095703125	2	552.285266	1102.55598	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.149	1	62.246	61.746	62.746	0.096985								0	0	0	0.19534	1	15308	15308		24.021	1.5679	1				54179	2863	30973	30974	66418	66418					0.008802785373518418
VQALKYENF	9	Unmodified	_VQALKYENF_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2921752929688	2	556.292756	1110.57096	0.041012	2.2814E-05	-0.80979	-0.00045048	-0.76878	-0.00042766	556.2920483866835	46.279	0.48526	46.279	46.055	46.54	0					44	17	3	0	0	0	0.0049842	1	10415	10415		107.1	47.026	1	1377400			54180	1105	30974	30975	66419	66419					0.020097256146982545
VQALKYENF	9	Unmodified	_VQALKYENF_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2919921875	2	556.292756	1110.57096	0.063153	3.5131E-05	-0.011451	-6.37E-06	0.051702	2.8761E-05	556.2927514594262	46.013	0.68615	46.072	45.647	46.333	0.059834					51	24	3	0	0	0	0.0085994	1	10338	10338		84.522	32.892	1	1119900			54181	1105	30974	30975	66420	66420					0.020097256146982545
VQALKYENF	9	Unmodified	_VQALKYENF_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.2924194335938	2	556.292756	1110.57096	0.3494	0.00019437	-0.75101	-0.00041778	-0.40161	-0.00022341	556.2919648301606	46.005	0.82001	46.07	45.516	46.336	0.065048					70	29	4	0	0	0	0.0060093	1	10329	10329		93.938	42.308	1	1159800			54182	1105	30974	30975	66421	66421					0.020097256146982545
VQARRAAA	8	Unmodified	_VQARRAAA_					0	0	0			REV__ENST00000602321.5_1_16:67682228-67682996:+|nuORF	REV__ENST00000602321.5_1_16:67682228-67682996:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7510986328125	2	421.751393	841.488233	-0.058867	-2.4827E-05	-0.15521	-6.5459E-05	-0.21408	-9.0287E-05	421.75126699563543	79.886	0.87482	79.886	79.638	80.513	0					71	32	3	0	0	0	0.4419	1	20721	20721		8.5933	0	1	764490	+		54183	22639	30975	30976	66422	66422					0.06114873397223164
VQARRAAA	8	Unmodified	_VQARRAAA_					0	0	0			REV__ENST00000602321.5_1_16:67682228-67682996:+|nuORF	REV__ENST00000602321.5_1_16:67682228-67682996:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	421.751393	841.488233	0.0039152	1.6512E-06	-0.23077	-9.7327E-05	-0.22685	-9.5676E-05	421.75122169494097	79.856	0.82463	79.917	79.542	80.366	0.061417	0.019869	-1.5434E-05	NaN	8.5933	70	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	743650	+		54184	22639	30975	30976							0.06114873397223164
VQEKKLEV	8	Unmodified	_VQEKKLEV_					0	0	0		nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.7773132324219	2	486.78985	971.565146	0.32695	0.00015916	-0.45572	-0.00022184	-0.12876	-6.2681E-05	486.7895865621004	38.078	0.33689	38.169	37.983	38.32	0.090885					19	11	2	0	0	0	0.3671	1	7941	7941		23.148	0	1	170030			54185	3796	30976	30977	66423	66423					0.07822627103041668
VQEKKLEV	8	Unmodified	_VQEKKLEV_					0	0	0		nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.77734375	2	486.78985	971.565146	0.2431	0.00011834	-0.20545	-0.00010001	0.03765	1.8328E-05	486.78966545846936	38.039	0.31329	38.136	37.953	38.266	0.097527					18	10	2	0	0	0	0.3671	1	7922	7922		23.148	0	1	182490			54186	3796	30976	30977	66424	66424					0.07822627103041668
VQELQDAK	8	Unmodified	_VQELQDAK_					0	0	0		ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1	ENSG00000163820|ENST00000296137|FYCO1	ENSG00000163820|ENST00000296137|FYCO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.23687744140625	2	465.748182	929.481811	0.10148	4.7265E-05	-0.20137	-9.3789E-05	-0.09989	-4.6524E-05	465.74786660049455	20.001	0.42633	19.885	19.7	20.126	-0.11592					21	14	2	0	0	0	0.34272	1	2460	2460		7.9102	0	1	22584			54187	5740	30977	30978	66425	66425					0.014248906551870277
VQERRKQGLR	10	Unmodified	_VQERRKQGLR_					0	0	0		nc|ENSG00000270379|A2RTY3-2|HEATR9	nc|ENSG00000270379|A2RTY3-2|HEATR9	nc|ENSG00000270379|A2RTY3-2|HEATR9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	635.3780517578125	2	635.378552	1268.74255	0.23163	0.00014717	-0.28955	-0.00018398	-0.057926	-3.6805E-05	635.3782108068343	18.791	0.47562	18.733	18.539	19.014	-0.058172					25	16	2	0	0	0	0.41512	1	2075	2075		0.40072	0.050084	1	62412			54188	12992	30978	30979	66426	66426					0.1189289542573988
VQFEATIEYS	10	Unmodified	_VQFEATIEYS_					0	0	0		ENST00000513085.1_1_5:95728707-95748688:-|nuORF;nc|ENSG00000175426|P29120-2|PCSK1;ENSG00000175426|ENST00000311106|PCSK1	ENST00000513085.1_1_5:95728707-95748688:-|nuORF	ENST00000513085.1_1_5:95728707-95748688:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8282470703125	2	593.784961	1185.55537	0.421	0.00024999	0.80082	0.00047551	1.2218	0.0007255	593.7855179722568	80.435	1.4864	80.435	79.926	81.412	0					81	63	2	0	0	0	0.32054	1	21000	21000		3.2813	0.28607	1	221110			54189	6863	30979	30980	66427	66427					-0.02998605692982892
VQFEATIEYS	10	Unmodified	_VQFEATIEYS_					0	0	0		ENST00000513085.1_1_5:95728707-95748688:-|nuORF;nc|ENSG00000175426|P29120-2|PCSK1;ENSG00000175426|ENST00000311106|PCSK1	ENST00000513085.1_1_5:95728707-95748688:-|nuORF	ENST00000513085.1_1_5:95728707-95748688:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7860107421875	2	593.784961	1185.55537	0.40667	0.00024147	0.79203	0.00047029	1.1987	0.00071177	593.785392212185	80.333	1.2212	80.306	79.646	80.868	-0.026817					63	43	3	0	0	0	0.39009	1	20899	20899		5.2969	1.3525	1	223590			54190	6863	30979	30980	66428	66428					-0.02998605692982892
VQFVTGSFIEK	11	Unmodified	_VQFVTGSFIEK_					0	0	0		ENSG00000181467|ENST00000323534|RAP2B	ENSG00000181467|ENST00000323534|RAP2B	ENSG00000181467|ENST00000323534|RAP2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.8876342773438	2	627.840071	1253.66559	0.53834	0.00033799	1.3181	0.00082757	1.8565	0.0011656	627.8402153774344	55.678	0.37239	55.678	55.482	55.854	0					29	12	3	0	0	0	0.32875	1	13267	13267		15.739	6.3555	1	313670			54191	7237	30980	30981	66429	66429					0.04890239366068272
VQFVTGSFIEK	11	Unmodified	_VQFVTGSFIEK_					0	0	0		ENSG00000181467|ENST00000323534|RAP2B	ENSG00000181467|ENST00000323534|RAP2B	ENSG00000181467|ENST00000323534|RAP2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.8881225585938	2	627.840071	1253.66559	0.4759	0.00029879	1.4174	0.00088993	1.8933	0.0011887	627.8402797226737	55.748	0.37708	55.729	55.588	55.965	-0.019081					27	13	3	0	0	0	0.32751	1	13313	13313		18.721	9.3381	1	339460			54192	7237	30980	30981	66430	66430					0.04890239366068272
VQGLYKSMPKF	11	Unmodified	_VQGLYKSMPKF_					0	0	0		ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.9295959472656	3	433.237286	1296.69003	0.24294	0.00010525	1.8767	0.00081304	2.1196	0.00091829	433.2379257841328	32.562	0.66	32.617	32.126	32.786	0.055313					51	23	3	0	0	0	0.32736	1	6224	6224		6.6235	2.2173	1	229040			54193	6485	30981	30982	66431	66431					0.0535517624791737
VQGNITQKF	9	Unmodified	_VQGNITQKF_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7848510742188	2	517.785099	1033.55564	0.50364	0.00026078	-1.9734	-0.0010218	-1.4697	-0.000761	517.7847153683848	33.4	0.63163	33.466	33.128	33.76	0.06636					52	22	3	0	0	0	0.00041688	1	6466	6466		128.57	84.715	1	737760			54194	368	30982	30983	66432	66432					0.04020858817534645
VQGNITQKF	9	Unmodified	_VQGNITQKF_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.78466796875	2	517.785099	1033.55564	0.12618	6.5333E-05	-1.556	-0.00080565	-1.4298	-0.00074032	517.7851572589499	33.417	0.88907	33.484	33.158	34.047	0.066704					83	31	5	0	0	0	0.00054549	1	6470	6470		128.57	72.396	1	789420			54195	368	30982	30983	66433	66433					0.04020858817534645
VQGRVERLGL	10	Unmodified	_VQGRVERLGL_					0	0	0		ENST00000377996.5_1_9:35846336-35847153:+|nuORF	ENST00000377996.5_1_9:35846336-35847153:+|nuORF	ENST00000377996.5_1_9:35846336-35847153:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.6445922851562	2	563.838197	1125.66184	-0.030444	-1.7165E-05	-1.3546	-0.00076377	-1.385	-0.00078093	563.837425353301	14.62	0.28384	14.62	14.505	14.789	0					16	9	2	0	0	0	0.31515	1	787	787		12.241	3.6474	1	67433			54196	9949	30983	30984	66434	66434					0.10403614382857995
VQGWLVQLV	9	Unmodified	_VQGWLVQLV_					0	0	0			REV__ENST00000504234.1_1_3:134090198-134092605:-|nuORF	REV__ENST00000504234.1_1_3:134090198-134092605:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2897338867188	2	521.30821	1040.60187	0.47387	0.00024703	-1.6998	-0.00088615	-1.226	-0.00063911	521.3073164521714	53.442	0.36552	53.433	53.166	53.531	-0.0096054					22	13	2	0	0	0	0.20344	1	12636	12636		23.148	0	1	360690	+		54197	21729	30984	30985	66435	66435					0.0831892371959384
VQHGQSLLQ	9	Unmodified	_VQHGQSLLQ_					0	0	0			REV__ENST00000489995.1_1_3:171483216-171489014:-|nuORF	REV__ENST00000489995.1_1_3:171483216-171489014:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2749328613281	2	505.274898	1008.53524	0.4342	0.00021939	0.19945	0.00010078	0.63365	0.00032017	505.27489616732225	44.242	0.64283	44.311	44.039	44.682	0.068569					55	23	3	0	0	0	0.07432	1	9827	9827		43.858	0	1	1300000	+		54198	21598	30985	30986	66436	66436					0.03131688157714052
VQHKEFIVF	9	Unmodified	_VQHKEFIVF_					0	0	0			REV__ENSG00000059378|ENST00000263549|PARP12	REV__ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.818603515625	2	573.818941	1145.62333	-0.12691	-7.2826E-05	-0.76264	-0.00043762	-0.88956	-0.00051044	573.8187262032271	12.146	0.14955	12.146	12.07	12.219	0					15	7	3	0	0	0	0.35512	1	41	41		0.6015	0.076735	1	41416	+		54199	13614	30986	30987	66437	66437					0.0563430874833557
VQHKEFIVF	9	Unmodified	_VQHKEFIVF_					0	0	0			REV__ENSG00000059378|ENST00000263549|PARP12	REV__ENSG00000059378|ENST00000263549|PARP12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.818359375	2	573.818941	1145.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.147	1	12.05	11.55	12.55	-0.096607								0	0	0	0.26704	1	42	42		0.6015	0	1		+		54200	13614	30986	30987	66438	66438					0.0563430874833557
VQHLISEKR	9	Unmodified	_VQHLISEKR_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.258056640625	2	555.324922	1108.63529	0.46859	0.00026022	-0.52341	-0.00029066	-0.054826	-3.0446E-05	555.3245347429614	44.974	0.49899	44.974	44.739	45.238	0					28	17	2	0	0	0	0.25527	1	10016	10016		8.7454	0	1	342990			54201	1637	30987	30988	66439	66439					0.08531925491524817
VQHLISEKR	9	Unmodified	_VQHLISEKR_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2579345703125	2	555.324922	1108.63529	0.43631	0.0002423	-1.7017	-0.00094498	-1.2654	-0.00070269	555.3245131831369	45.776	0.81848	45.841	45.302	46.121	0.065048					63	29	3	0	0	0	0.24924	1	10134	10134		10.151	0.76745	1	411460			54202	1637	30987	30988	66440	66440					0.08531925491524817
VQHSKENQLI	10	Unmodified	_VQHSKENQLI_					0	0	0			REV__INTS4|p.P209Hfs*8|1|0.34|ENSG00000149262|chr11:77960984-77960984|G/-|frameshift_variant	REV__INTS4|p.P209Hfs*8|1|0.34|ENSG00000149262|chr11:77960984-77960984|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.827392578125	2	598.325119	1194.63569	0.35999	0.00021539	-0.058202	-3.4824E-05	0.30179	0.00018057	598.3251684359157	96.466	0.5689	96.536	96.252	96.821	0.070465					106	57	3	0	0	0	0.39935	1	25767	25767		3.5965	0	1	113840	+		54203	16456	30988	30989	66441	66441					0.046153004207099
VQHSKENQLI	10	Unmodified	_VQHSKENQLI_					0	0	0			REV__INTS4|p.P209Hfs*8|1|0.34|ENSG00000149262|chr11:77960984-77960984|G/-|frameshift_variant	REV__INTS4|p.P209Hfs*8|1|0.34|ENSG00000149262|chr11:77960984-77960984|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3257446289062	2	598.325119	1194.63569	0.42158	0.00025224	-0.29861	-0.00017867	0.12297	7.3574E-05	598.3251513417945	96.554	0.5172	96.548	96.27	96.788	-0.0055466					99	51	3	0	0	0	0.39935	1	25835	25835		3.5965	0	1	128450	+		54204	16456	30988	30989	66442	66442					0.046153004207099
VQIAPYKP	8	Unmodified	_VQIAPYKP_					0	0	0			REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|31|1|anti-sense	REV__Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|31|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.7381896972656	2	458.268553	914.522553	0.054281	2.4875E-05	1.0593	0.00048546	1.1136	0.00051034	458.27020231604763	17.054	0.28399	17.054	16.867	17.151	0					13	9	2	0	0	0	0.34353	1	1501	1501		4.756	0	1	15470	+		54205	22692	30989	30990	66443	66443					0.06187276765456318
VQIDALLEQ	9	Unmodified	_VQIDALLEQ_					0	0	0			REV__ENST00000592497.1_1_17:76705671-76778305:-|nuORF	REV__ENST00000592497.1_1_17:76705671-76778305:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.795166015625	2	514.784764	1027.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.973	1	12.973	12.473	13.473	0								0	0	0	0.25197	1	286	286		5.7319	0	1		+		54206	22560	30990	30991	66444	66444					0.04230019377791905
VQIESRLIS	9	Unmodified	_VQIESRLIS_					0	0	0			REV__ENST00000451644.5_1_2:12246998-12271622:+|nuORF	REV__ENST00000451644.5_1_2:12246998-12271622:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.32421875	2	522.806031	1043.59751	0.4494	0.00023495	3.7132	0.0019413	4.1626	0.0021763	522.8076133171606	70.418	0.44492	70.478	70.299	70.744	0.060783					21	15	2	0	0	0	0.20626	1	17875	17875		22.736	5.6234	1	164260	+		54207	21119	30991	30992	66445	66445					0.07745414506052839
VQIESRLIS	9	Unmodified	_VQIESRLIS_					0	0	0			REV__ENST00000451644.5_1_2:12246998-12271622:+|nuORF	REV__ENST00000451644.5_1_2:12246998-12271622:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	522.806031	1043.59751	0.49148	0.00025695	2.8788	0.0015051	3.3703	0.001762	522.8076436449564	70.457	0.43781	70.457	70.301	70.739	0	-0.0094659	-0.00036557	NaN	22.736	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225450	+		54208	21119	30991	30992							0.07745414506052839
VQIESRLIS	9	Unmodified	_VQIESRLIS_					0	0	0			REV__ENST00000451644.5_1_2:12246998-12271622:+|nuORF	REV__ENST00000451644.5_1_2:12246998-12271622:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	522.806031	1043.59751	0.4494	0.00023495	3.7132	0.0019413	4.1626	0.0021763	522.8076133171606	70.418	0.44492	70.478	70.299	70.744	0.060783	0.011362	0.00050692	NaN	22.736	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164260	+		54209	21119	30991	30992							0.07745414506052839
VQIESRLIS	9	Unmodified	_VQIESRLIS_					0	0	0			REV__ENST00000451644.5_1_2:12246998-12271622:+|nuORF	REV__ENST00000451644.5_1_2:12246998-12271622:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.806031	1043.59751	0.49828	0.0002605	3.3109	0.001731	3.8092	0.0019915	522.8072614720414	70.49	0.31078	70.465	70.329	70.64	-0.024872	-0.0018958	8.6217E-05	NaN	22.736	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162220	+		54210	21119	30991	30992							0.07745414506052839
VQIRGLIVL	9	Unmodified	_VQIRGLIVL_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|410|3|anti-sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|410|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.80340576171875	2	505.839677	1009.6648	0.29873	0.00015111	-0.17463	-8.8333E-05	0.1241	6.2776E-05	505.8395707574525	43.408	0.61805	43.408	43.149	43.767	0					36	22	2	0	0	0	0.2322	1	9482	9482		20.454	8.8133	1	379580	+		54211	22750	30992	30993	66446	66446					0.16035489507646616
VQISKSTSLA	10	Unmodified	_VQISKSTSLA_					0	0	0			REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2380981445312	2	517.298039	1032.58152	0.41515	0.00021476	1.8487	0.00095632	2.2638	0.0011711	517.2974051372362	21.441	0.46291	21.441	21.138	21.601	0					30	15	3	0	0	0	0.32054	1	2852	2852		3.2813	0.97858	1	59203	+		54212	15939	30993	30994	66447	66447					0.06653708269141134
VQKFYATTF	9	Unmodified	_VQKFYATTF_					0	0	0			REV__ENST00000474008.1_1_16:30745272-30745347:+|nuORF	REV__ENST00000474008.1_1_16:30745272-30745347:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.8244018554688	2	552.78985	1103.56515	0.64089	0.00035428	-0.52824	-0.00029201	0.11265	6.2272E-05	552.7895731140718	54.772	0.74621	54.756	54.361	55.107	-0.015919					42	26	2	0	0	0	0.22596	1	12962	12962		15.847	0	1	361670	+		54213	21388	30994	30995	66448	66448					0.017506271030242715
VQKRVRTWYEY	11	Unmodified	_VQKRVRTWYEY_					0	0	0		nc|ENSG00000170289|Q9NQW8-2|CNGB3;ENSG00000170289|ENST00000320005|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8003845214844	3	509.940409	1526.7994	0.32876	0.00016765	-0.92235	-0.00047034	-0.59358	-0.00030269	509.9402299401116	58.572	0.45448	58.664	58.366	58.821	0.091305					26	15	2	0	0	0	0.3322	1	14121	14121		1.2148	1.1315	1	148740			54214	6439	30995	30996	66449	66449					0.05706898191624532
VQKRVRTWYEY	11	Unmodified	_VQKRVRTWYEY_					0	0	0		nc|ENSG00000170289|Q9NQW8-2|CNGB3;ENSG00000170289|ENST00000320005|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	509.940409	1526.7994	0.36409	0.00018567	-1.2455	-0.00063512	-0.88139	-0.00044945	510.27392789912926	58.848	0.50147	58.833	58.583	59.084	-0.014271	0.084767	-0.00034728	NaN	1.2148	28	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231630			54215	6439	30995	30996							0.05706898191624532
VQKTLRRLQET	11	Unmodified	_VQKTLRRLQET_					0	0	0			REV__ENSG00000197557|ENST00000355689|TTC30A	REV__ENSG00000197557|ENST00000355689|TTC30A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.27960205078125	3	457.940409	1370.7994	0.50383	0.00023072	1.881	0.00086137	2.3848	0.0010921	458.27526468998116	58.241	0.60276	58.224	57.977	58.58	-0.017197					32	21	2	0	0	0	0.33169	1	14037	14037		3.8459	0	1	292700	+		54216	18744	30996	30997	66450	66450					0.1288289819158308
VQKYDDSF	8	Unmodified	_VQKYDDSF_					0	0	0		ENST00000488504.5_1_22:50691832-50695243:-|nuORF;ENST00000482969.5_1_22:50693515-50695072:-|nuORF;nc|ENSG00000188130|P53778-2|MAPK12;ENSG00000188130|ENST00000215659|MAPK12;ENST00000497036.5_1_22:50691832-50699551:-|nuORF;ENST00000497738.1_1_22:50693515-50694479:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	ENST00000488504.5_1_22:50691832-50695243:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.29266357421875	2	501.232364	1000.45018	0.37688	0.0001889	-0.88409	-0.00044313	-0.50721	-0.00025423	501.2317260131736	58.069	0.16383	58.154	58.025	58.189	0.085621					7	5	2	0	0	0	0.34131	1	14063	14063		12.532	0.89125	1	85579			54217	7731	30997	30998	66451	66451					-0.05003102098760337
VQKYKYLA	8	Unmodified	_VQKYKYLA_					0	0	0		ENST00000463634.6_1_6:4041126-4056780:+|nuORF;ENSG00000112739|ENST00000337659|PRPF4B;ENST00000380194.3_1_9:117609392-117609554:+|nuORF;ENST00000490399.5_1_6:4041126-4044298:+|nuORF	ENST00000463634.6_1_6:4041126-4056780:+|nuORF	ENST00000463634.6_1_6:4041126-4056780:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.2336120605469	2	506.794935	1011.57532	0.10436	5.2892E-05	-2.4688	-0.0012512	-2.3644	-0.0011983	506.79288816505453	19.023	0.91203	18.965	18.57	19.482	-0.058174					80	31	4	0	0	0	0.344	1	2186	2186		2.5775	0.27475	1	91129			54218	2457	30998	30999	66452	66452					0.06999234828276713
VQLKWRRP	8	Unmodified	_VQLKWRRP_					0	0	0			REV__ENSG00000120952|ENST00000240189|PRAMEF2	REV__ENSG00000120952|ENST00000240189|PRAMEF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7591552734375	2	541.832717	1081.65088	0.44731	0.00024236	-1.4832	-0.00080364	-1.0359	-0.00056127	541.8320345584234	24.724	0.60578	24.724	24.486	25.091	0					29	20	2	0	0	0	0.344	1	3823	3823		2.5775	0	1	82434	+		54219	15105	30999	31000	66453	66453					0.11332256799209972
VQLKWRRP	8	Unmodified	_VQLKWRRP_					0	0	0			REV__ENSG00000120952|ENST00000240189|PRAMEF2	REV__ENSG00000120952|ENST00000240189|PRAMEF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	541.832717	1081.65088	0.4397	0.00023824	-1.4066	-0.00076213	-0.96689	-0.00052389	541.8320166820074	24.778	0.48434	24.722	24.514	24.999	-0.055931	-0.00075364	-1.0438E-05	NaN	2.5775	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80130	+		54220	15105	30999	31000							0.11332256799209972
VQLKWRRP	8	Unmodified	_VQLKWRRP_					0	0	0			REV__ENSG00000120952|ENST00000240189|PRAMEF2	REV__ENSG00000120952|ENST00000240189|PRAMEF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.832717	1081.65088	0.292	0.00015822	-1.2235	-0.00066292	-0.93147	-0.0005047	541.8323445083123	24.753	0.49739	24.722	24.456	24.953	-0.031408	-0.00063962	0.000188	NaN	2.5775	18	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93135	+		54221	15105	30999	31000							0.11332256799209972
VQLLHHKVDG	10	Unmodified	_VQLLHHKVDG_					0	0	0			REV__ENST00000563328.4_1_16:72821533-72822025:+|nuORF	REV__ENST00000563328.4_1_16:72821533-72822025:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.3242797851562	2	573.324922	1144.63529	0.13612	7.8039E-05	-2.1297	-0.001221	-1.9935	-0.0011429	573.324449621354	101.19	1.2858	101.22	100.42	101.71	0.027206					379	175	3	0	0	0	0.31847	1	27043	27043		3.5965	0	1	383880	+		54222	22328	31000	31001	66454	66454					0.06875925491499402
VQLLQFQE	8	Unmodified	_VQLLQFQE_					0	0	0		SMARCC2|p.K585Rfs*72|1|0.33|ENSG00000139613|chr12:56172601-56172601|T/-|frameshift_variant;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2;ENST00000550859.5_1_12:56575573-56583167:-|nuORF;ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2|SMARCC2	SMARCC2|p.K585Rfs*72|1|0.33|ENSG00000139613|chr12:56172601-56172601|T/-|frameshift_variant	SMARCC2|p.K585Rfs*72|1|0.33|ENSG00000139613|chr12:56172601-56172601|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.7635498046875	2	502.7742	1003.53385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.473	1	30.5	30	31	0.027157								0	0	0	0.35843	1	5576	5576		10.824	0.75	1				54223	4247	31001	31002	66455	66455					0.032220540689422705
VQLLQPKRQL	10	Unmodified	_VQLLQPKRQL_					0	0	0			REV__ENSG00000165370|ENST00000651716|GPR101	REV__ENSG00000165370|ENST00000651716|GPR101	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.8997497558594	3	408.25919	1221.75574	-0.081685	-3.3349E-05	1.0506	0.00042892	0.96892	0.00039557	408.25950805322714	52.604	1.14	52.604	51.954	53.094	-0.00080872					56	41	2	0	0	0	0.32137	1	12211	12211		1.7423	0.14999	1	622740	+		54224	17231	31002	31003	66456	66456					0.1537333348512675
VQLNLLYVQ	9	Unmodified	_VQLNLLYVQ_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000378192.2_1_9:35723947-35725691:-|nuORF;ENSG00000171914|ENST00000636159|TLN2;TLN2|p.I2353Mfs*42|1|0.13|ENSG00000171914|chr15:62833559-62833559|T/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3170776367188	2	545.318774	1088.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.59	1	118.56	118.06	119.06	-0.024147								0	0	0	0.2672	1	30649	30649		0.52476	0	1				54225	4024;6595	31003	31004	66457	66457					0.08222889028479585
VQLPKRYR	8	Unmodified	_VQLPKRYR_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1;ENST00000474707.1_1_9:125835857-125839047:+|nuORF;nc|ENSG00000152061|Q5R372-7|RABGAP1L;nc|ENSG00000152061|Q5R372-8|RABGAP1L;nc|ENSG00000152061|Q5R372-6|RABGAP1L;nc|ENSG00000152061|Q5R372-5|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L	ENSG00000011454|ENST00000373647|RABGAP1;nc|ENSG00000152061|Q5R372-4|RABGAP1L	nc|ENSG00000152061|Q5R372-4|RABGAP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3240356445312	2	530.324725	1058.6349	0.07304	3.8735E-05	-1.0442	-0.00055377	-0.97117	-0.00051504	530.3240928968603	14.334	0.43699	14.23	14.079	14.516	-0.10466					40	14	4	0	0	0	0.46491	1	742	742		0.69038	0	1	196320			54226	4997;444	31004	31005	66458	66458					0.10792550562291581
VQLRNVKSSE	10	Unmodified	_VQLRNVKSSE_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3265380859375	2	580.325119	1158.63569	0.16007	9.2894E-05	1.0122	0.00058743	1.1723	0.00068032	580.3258644645205	19.243	0.36346	19.127	18.947	19.311	-0.11592					21	12	2	0	0	0	0.41242	1	2195	2195		1.1933	0	1	61662			54227	8424	31005	31006	66459	66459					0.06271300420712578
VQLRQGLP	8	Unmodified	_VQLRQGLP_					0	0	0			REV__ENST00000340437.8_1_11:61170494-61170638:-|nuORF	REV__ENST00000340437.8_1_11:61170494-61170638:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2491455078125	2	455.777077	909.5396	-0.050037	-2.2806E-05	0.40907	0.00018645	0.35903	0.00016364	455.7771073799308	15.237	0.58522	15.127	14.905	15.491	-0.10982					32	20	2	0	0	0	0.34337	1	968	968		5.2307	0	1	51713	+		54228	20107	31006	31007	66460	66460					0.08121197371269773
VQLRQKLNP	9	Unmodified	_VQLRQKLNP_					0	0	0			REV__ENSG00000124143|ENST00000373345|ARHGAP40	REV__ENSG00000124143|ENST00000373345|ARHGAP40	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2733154296875	2	548.33529	1094.65603	0.21801	0.00011954	-0.54344	-0.00029799	-0.32543	-0.00017845	548.3348580555662	18.903	0.64836	18.903	18.563	19.211	0					51	22	4	0	0	0	0.26257	1	2005	2005		0.52476	0	1	144240	+		54229	15210	31007	31008	66461	66461					0.11248515871147902
VQLRQKLNP	9	Unmodified	_VQLRQKLNP_					0	0	0			REV__ENSG00000124143|ENST00000373345|ARHGAP40	REV__ENSG00000124143|ENST00000373345|ARHGAP40	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.33529	1094.65603	0.3324	0.00018227	-0.78777	-0.00043196	-0.45537	-0.00024969	548.334813003337	19.074	0.52372	18.957	18.734	19.258	-0.11739	0.021252	-0.00012208	NaN	0.52476	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162190	+		54230	15210	31007	31008							0.11248515871147902
VQLRQKLNP	9	Unmodified	_VQLRQKLNP_					0	0	0			REV__ENSG00000124143|ENST00000373345|ARHGAP40	REV__ENSG00000124143|ENST00000373345|ARHGAP40	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	548.33529	1094.65603	0.26016	0.00014265	-0.73757	-0.00040444	-0.47741	-0.00026178	548.3346737304562	19.004	0.4907	18.946	18.707	19.198	-0.058172	0.010756	-6.7034E-05	NaN	0.52476	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122730	+		54231	15210	31007	31008							0.11248515871147902
VQLVRFVIC	9	Unmodified	_VQLVRFVIC_					0	0	0			REV__ENST00000469802.5_1_20:61464351-61467803:+|nuORF	REV__ENST00000469802.5_1_20:61464351-61467803:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.81982421875	2	538.817887	1075.62122	0.39045	0.00021038	2.5207	0.0013582	2.9111	0.0015686	538.8192188160357	17.946	0.2218	17.946	17.802	18.024	0					8	6	2	0	0	0	0.34536	1	1801	1801		2.0598	1.3694	1	19607	+		54232	21234	31008	31009	66462	66462					0.0864355673886621
VQMLISTL	8	Unmodified	_VQMLISTL_					0	0	0		ENSG00000196422|ENST00000356818|PPP1R26	ENSG00000196422|ENST00000356818|PPP1R26	ENSG00000196422|ENST00000356818|PPP1R26	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7527160644531	2	452.762246	903.50994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.502	1	66.488	65.988	66.988	-0.013588								0	0	0	0.27914	1	16638	16638		32.117	0	1				54233	7862	31009	31010	66463	66463					0.0543249731092601
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2828369140625	2	515.282389	1028.55022	0.44006	0.00022676	0.23878	0.00012304	0.67884	0.0003498	515.2825616722705	56.953	1.4951	56.953	56.633	58.128	0					145	54	5	0	0	0	6.5985E-11	4	13712	13712;13759;13810;13860		181.69	55.125	1	10021000			54234	7480	31010	31011	66464;66465;66466;66467	66464					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2828979492188	2	515.282389	1028.55022	0.29024	0.00014955	0.40042	0.00020633	0.69065	0.00035588	515.282669796751	56.882	1.3096	56.961	56.628	57.938	0.078674					121	48	4	0	0	0	6.5985E-11	1	13686	13686		181.69	51.919	1	11210000			54235	7480	31010	31011	66468	66468					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2826538085938	2	515.282389	1028.55022	0.34413	0.00017733	0.3336	0.0001719	0.67773	0.00034922	515.2825848034997	57.019	1.4125	57	56.672	58.085	-0.019077					128	51	4	0	0	0	6.5985E-11	1	13724	13724		181.69	55.125	1	10932000			54236	7480	31010	31011	66469	66469					0.03709135235044414
VQNNSPQLN	9	Unmodified	_VQNNSPQLN_					0	0	0		ENST00000512003.7_1_5:109946270-109963572:-|nuORF;ENST00000508571.6_1_5:109668587-109961153:-|nuORF;ENST00000515518.6_1_5:109760554-109978041:-|nuORF;nc|ENSG00000186952|C9JQI7-2|TMEM232;ENSG00000186952|ENST00000455884|TMEM232	ENST00000512003.7_1_5:109946270-109963572:-|nuORF	ENST00000512003.7_1_5:109946270-109963572:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.27227783203125	2	507.254163	1012.49377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.106	1	23.061	22.561	23.561	-0.044867								0	0	0	0.22065	1	3345	3345		15.847	1.0089	1				54237	7657	31011	31012	66470	66470					-0.011974926016137033
VQNPALRLV	9	Unmodified	_VQNPALRLV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2771911621094	2	505.311284	1008.60801	0.42149	0.00021298	0.066302	3.3503E-05	0.48779	0.00024648	505.3113418405861	49.002	0.49383	49.002	48.749	49.243	0					22	17	2	0	0	0	0.23784	1	11286	11286		19.257	8.4331	1	456600			54238	1349	31012	31013	66471	66471					0.10405441951127159
VQNPALRLV	9	Unmodified	_VQNPALRLV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.27716064453125	2	505.311284	1008.60801	0.30392	0.00015357	0.21998	0.00011116	0.5239	0.00026473	505.311267768803	48.95	0.43912	48.995	48.878	49.317	0.044891					24	15	2	0	0	0	0.23784	1	11312	11312		19.257	4.4187	1	343730			54239	1349	31012	31013	66472	66472					0.10405441951127159
VQNPALRLV	9	Unmodified	_VQNPALRLV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2772216796875	2	505.311284	1008.60801	0.16051	8.1106E-05	0.91663	0.00046318	1.0771	0.00054429	505.3115137635236	48.968	0.46732	49	48.828	49.295	0.032043					32	16	3	0	0	0	0.22061	1	11259	11259		24.021	9.1823	1	340840			54240	1349	31012	31013	66473	66473					0.10405441951127159
VQNPRVKLI	9	Unmodified	_VQNPRVKLI_					0	0	0		nc|ENSG00000101134|Q9P104-2|DOK5;ENSG00000101134|ENST00000262593|DOK5	nc|ENSG00000101134|Q9P104-2|DOK5	nc|ENSG00000101134|Q9P104-2|DOK5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.8040161132812	2	533.840208	1065.66586	0.42766	0.0002283	-0.8373	-0.00044698	-0.40964	-0.00021868	533.8396163489124	26.957	0.39617	26.957	26.841	27.237	0					29	13	3	0	0	0	0.22596	1	4532	4532		21.747	5.8995	1	123000			54241	1664	31013	31014	66474	66474					0.1356570387656575
VQNPRVKLI	9	Unmodified	_VQNPRVKLI_					0	0	0		nc|ENSG00000101134|Q9P104-2|DOK5;ENSG00000101134|ENST00000262593|DOK5	nc|ENSG00000101134|Q9P104-2|DOK5	nc|ENSG00000101134|Q9P104-2|DOK5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.8038940429688	2	533.840208	1065.66586	0.23926	0.00012773	-0.87645	-0.00046788	-0.63719	-0.00034016	533.8398593066212	26.971	0.4521	26.949	26.839	27.291	-0.021412					31	15	3	0	0	0	0.20651	1	4543	4543		26.884	5.137	1	97914			54242	1664	31013	31014	66475	66475					0.1356570387656575
VQNRRAWWAKR	11	Unmodified	_VQNRRAWWAKR_					0	0	0		LTR1F1_dup64|chr4:69041687-69042422:+|2.255451106523636|0.1032861701613835|4.45|537.0|30|2|anti-sense	LTR1F1_dup64|chr4:69041687-69042422:+|2.255451106523636|0.1032861701613835|4.45|537.0|30|2|anti-sense	LTR1F1_dup64|chr4:69041687-69042422:+|2.255451106523636|0.1032861701613835|4.45|537.0|30|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.3026123046875	3	490.944488	1469.81163	0.68537	0.00033648	1.1578	0.00056842	1.8432	0.00090489	490.9450694839567	45.695	0.38371	45.695	45.476	45.86	0					29	13	3	0	0	0	0.33236	1	10271	10271		4.4062	2.951	1	197770			54243	12512	31014	31015	66476	66476					0.09551979445291181
VQNRRAWWAKR	11	Unmodified	_VQNRRAWWAKR_					0	0	0		LTR1F1_dup64|chr4:69041687-69042422:+|2.255451106523636|0.1032861701613835|4.45|537.0|30|2|anti-sense	LTR1F1_dup64|chr4:69041687-69042422:+|2.255451106523636|0.1032861701613835|4.45|537.0|30|2|anti-sense	LTR1F1_dup64|chr4:69041687-69042422:+|2.255451106523636|0.1032861701613835|4.45|537.0|30|2|anti-sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	490.944488	1469.81163	0.62794	0.00030828	1.3722	0.00067365	2.0001	0.00098194	491.27939108775786	45.392	0.42405	45.452	45.253	45.677	0.059834	-0.1067	-1.7854E-05	NaN	4.4062	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204170			54244	12512	31014	31015							0.09551979445291181
VQNRRAWWAKR	11	Unmodified	_VQNRRAWWAKR_					0	0	0		LTR1F1_dup64|chr4:69041687-69042422:+|2.255451106523636|0.1032861701613835|4.45|537.0|30|2|anti-sense	LTR1F1_dup64|chr4:69041687-69042422:+|2.255451106523636|0.1032861701613835|4.45|537.0|30|2|anti-sense	LTR1F1_dup64|chr4:69041687-69042422:+|2.255451106523636|0.1032861701613835|4.45|537.0|30|2|anti-sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	490.944488	1469.81163	0.45734	0.00022453	1.6295	0.00080001	2.0869	0.0010245	490.94504267133556	45.464	0.47866	45.529	45.248	45.727	0.065048	-0.029307	0.00036123	NaN	4.4062	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212650			54245	12512	31014	31015							0.09551979445291181
VQNSNPKVQ	9	Unmodified	_VQNSNPKVQ_					0	0	0			REV__nc|ENSG00000023909|P48507-2|GCLM	REV__nc|ENSG00000023909|P48507-2|GCLM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2722473144531	2	507.272355	1012.53016	0.088895	4.5094E-05	-0.027509	-1.3954E-05	0.061386	3.114E-05	507.2722391210185	23.08	1.0469	23.08	22.622	23.669	0					70	36	3	0	0	0	0.14076	1	3336	3336		32.305	0	1	413090	+		54246	13476	31015	31016	66477	66477					0.024393842950985345
VQPDCCDGDDF	11	Unmodified	_VQPDCCDGDDF_					0	0	0			REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8716430664062	2	607.210446	1212.40634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.17	1	117.17	116.67	117.67	0								0	0	0	0.38206	1	30310	30310		0.26902	0.26902	1		+		54247	14916	31016	31017	66478	66478					-0.19136822649716123
VQPDCCDGDDF	11	Unmodified	_VQPDCCDGDDF_					0	0	0			REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.2099609375	2	607.210446	1212.40634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.62	1	116.59	116.09	117.09	-0.022781								0	0	0	0.38206	1	30207	30207		0.26902	0.26902	1		+		54248	14916	31016	31017	66479	66479					-0.19136822649716123
VQPDCCDGDDF	11	Unmodified	_VQPDCCDGDDF_					0	0	0			REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8724365234375	2	607.210446	1212.40634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.09	1	118.06	117.56	118.56	-0.024147								0	0	0	0.38206	1	30540	30540		0.26902	0.26902	1		+		54249	14916	31016	31017	66480	66480					-0.19136822649716123
VQPDCCDGDDF	11	Unmodified	_VQPDCCDGDDF_					0	0	0			REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8721313476562	2	607.210446	1212.40634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.9	1	113.92	113.42	114.42	0.016708								0	0	0	0.38206	1	29630	29630		0.26902	0.26902	1		+		54250	14916	31016	31017	66481	66481					-0.19136822649716123
VQPDCCDGDDF	11	Unmodified	_VQPDCCDGDDF_					0	0	0			REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8721923828125	2	607.210446	1212.40634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.65	1	116.67	116.17	117.17	0.020988								0	0	0	0.38206	1	30262	30262		0.26902	0.26902	1		+		54251	14916	31016	31017	66482	66482					-0.19136822649716123
VQPDCCDGDDF	11	Unmodified	_VQPDCCDGDDF_					0	0	0			REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8719482421875	2	607.210446	1212.40634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.37	1	118.4	117.9	118.9	0.026253								0	0	0	0.38206	1	30654	30654		0.26902	0.26902	1		+		54252	14916	31016	31017	66483	66483					-0.19136822649716123
VQPGQLAEF	9	Unmodified	_VQPGQLAEF_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7841491699219	2	494.758549	987.502546	0.503	0.00024886	-0.63054	-0.00031196	-0.12754	-6.31E-05	494.7582286653644	57.498	0.52836	57.498	57.19	57.718	0					28	18	2	0	0	0	0.10058	1	13836	13836		38.176	17.722	1	471070			54253	4464	31017	31018	66484	66484					0.008294810348502324
VQPGQLAEF	9	Unmodified	_VQPGQLAEF_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7840881347656	2	494.758549	987.502546	0.42585	0.00021069	-0.66864	-0.00033081	-0.24278	-0.00012012	494.75820387171433	57.313	0.47411	57.399	57.156	57.63	0.085621					27	16	2	0	0	0	0.13643	1	13797	13797		38.176	25.133	1	590260			54254	4464	31017	31018	66485	66485					0.008294810348502324
VQPGQLAEF	9	Unmodified	_VQPGQLAEF_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.78424072265625	2	494.758549	987.502546	0.21647	0.0001071	-0.22954	-0.00011357	-0.013075	-6.4689E-06	494.75831121232886	57.519	0.43027	57.502	57.259	57.69	-0.017197					24	15	2	0	0	0	0.18123	1	13847	13847		34.402	18.555	1	464210			54255	4464	31017	31018	66486	66486					0.008294810348502324
VQPKFRYP	8	Unmodified	_VQPKFRYP_					0	0	0		nc|ENSG00000089094|Q8NHM5-5|KDM2B;ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B	nc|ENSG00000089094|Q8NHM5-5|KDM2B	nc|ENSG00000089094|Q8NHM5-5|KDM2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2319946289062	2	517.792727	1033.5709	0.3466	0.00017947	-3.2204	-0.0016675	-2.8738	-0.001488	517.791153893823	29.627	0.72846	29.639	29.331	30.06	0.012266					34	24	3	0	0	0	0.34131	1	5327	5327		12.532	1.0368	1	127330			54256	1348	31018	31019	66487	66487					0.05545770405365147
VQPKQDAFANF	11	Unmodified	_VQPKQDAFANF_					0	0	0		nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF	nc|ENSG00000113282|Q14677-2|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.819580078125	2	632.81967	1263.62479	0.077431	4.9E-05	0.043077	2.726E-05	0.12051	7.626E-05	632.8195302392994	46.411	0.50894	46.411	46.194	46.703	0					47	18	3	0	0	0	0.006514	1	10448	10448		77.049	54.312	1	1161200			54257	2488	31019	31020	66488	66488					0.003518980464150445
VQPKQDAFANF	11	Unmodified	_VQPKQDAFANF_					0	0	0		nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF	nc|ENSG00000113282|Q14677-2|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.8194580078125	2	632.81967	1263.62479	0.19156	0.00012122	-0.21497	-0.00013604	-0.02341	-1.4814E-05	632.819289130163	46.161	0.63388	46.221	45.951	46.585	0.059837					46	22	3	0	0	0	0.0086212	2	10363	10363;10411		72.59	46.321	1	975590			54258	2488	31019	31020	66489;66490	66489					0.003518980464150445
VQPKQDAFANF	11	Unmodified	_VQPKQDAFANF_					0	0	0		nc|ENSG00000113282|Q14677-2|CLINT1;ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF	nc|ENSG00000113282|Q14677-2|CLINT1	nc|ENSG00000113282|Q14677-2|CLINT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.8192138671875	2	632.81967	1263.62479	0.4062	0.00025705	-0.53613	-0.00033928	-0.12993	-8.2222E-05	632.8191484097334	46.162	0.63655	46.227	45.976	46.613	0.065048					51	22	3	0	0	0	0.029905	2	10405	10350;10405		59.052	37.515	1	1032700			54259	2488	31019	31020	66491;66492	66492					0.003518980464150445
VQPRAEEPR	9	Unmodified	_VQPRAEEPR_					0	0	0		nc|ENSG00000160224|O43918-3|AIRE;nc|ENSG00000160224|O43918-2|AIRE;nc|ENSG00000160224|O43918-4|AIRE;ENSG00000160224|ENST00000291582|AIRE	nc|ENSG00000160224|O43918-3|AIRE	nc|ENSG00000160224|O43918-3|AIRE	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2822265625	2	541.291079	1080.56761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.275	1	23.275	22.775	23.775	0								0	0	0	0.25197	1	3398	3398		5.7319	0	1				54260	5451	31020	31021	66493	66493					0.030544755607024854
VQPRKLTSF	9	Unmodified	_VQPRKLTSF_					0	0	0			REV__ENSG00000162944|ENST00000295049|RFTN2	REV__ENSG00000162944|ENST00000295049|RFTN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.8067016601562	2	538.316566	1074.61858	0.62876	0.00033847	0.19624	0.00010564	0.825	0.00044411	538.3164147504934	32.029	0.52919	32.071	31.852	32.382	0.042366					28	18	2	0	0	0	0.21905	1	6149	6149		16.942	6.1184	1	351370	+		54261	17023	31021	31022	66494	66494					0.0842542460554796
VQPRNWLLF	9	Unmodified	_VQPRNWLLF_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8334350585938	2	586.832383	1171.65021	0.36859	0.0002163	0.35429	0.00020791	0.72288	0.00042421	586.8326316532189	70.989	0.498	70.989	70.711	71.209	0					45	17	3	0	0	0	0.068501	2	18046	17986;18046		46.021	24.274	1	1189800			54262	754	31022	31023	66495;66496	66496					0.07125417359520725
VQPRNWLLF	9	Unmodified	_VQPRNWLLF_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8324584960938	2	586.832383	1171.65021	0.44999	0.00026407	-0.043343	-2.5435E-05	0.40665	0.00023864	586.83254341872	71.025	0.59916	71	70.718	71.317	-0.024872					49	21	4	0	0	0	0.17787	1	17983	17983		26.884	6.43	1	927970			54263	754	31022	31023	66497	66497					0.07125417359520725
VQPRNWLLF	9	Unmodified	_VQPRNWLLF_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	586.832383	1171.65021	0.28792	0.00016896	0.19873	0.00011662	0.48666	0.00028559	586.8324880626902	70.97	0.55511	71.031	70.718	71.273	0.060783	0.024354	8.7277E-06	NaN	46.021	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	930000			54264	754	31022	31023							0.07125417359520725
VQPRNWLLFA	10	Unmodified	_VQPRNWLLFA_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.35107421875	2	622.35094	1242.68733	0.32434	0.00020185	-0.28861	-0.00017962	0.035733	2.2238E-05	622.3508806913878	70.639	0.58513	70.639	70.378	70.963	0					39	20	3	0	0	0	0.18562	1	17936	17936		34.402	22.161	1	350150			54265	754	31023	31024	66498	66498					0.07569088905279386
VQPRNWLLFA	10	Unmodified	_VQPRNWLLFA_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3512573242188	2	622.35094	1242.68733	0.097297	6.0553E-05	-0.041373	-2.5748E-05	0.055924	3.4804E-05	622.3510155161201	70.623	0.49431	70.684	70.434	70.928	0.060783					39	17	3	0	0	0	0.2811	1	17915	17915		22.736	7.4878	1	419200			54266	754	31023	31024	66499	66499					0.07569088905279386
VQPRNWLLFA	10	Unmodified	_VQPRNWLLFA_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3507080078125	2	622.35094	1242.68733	0.27353	0.00017023	-0.35349	-0.00022	-0.079964	-4.9766E-05	622.3508368790586	70.719	0.53608	70.694	70.407	70.943	-0.024872					40	18	3	0	0	0	0.11922	1	17935	17935		43.858	23.444	1	382100			54267	754	31023	31024	66500	66500					0.07569088905279386
VQPSKYHFL	9	Unmodified	_VQPSKYHFL_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.8031005859375	2	559.803291	1117.59203	0.40426	0.0002263	-0.72271	-0.00040458	-0.31846	-0.00017827	559.8027231340969	37.408	1.0915	37.495	37.169	38.261	0.08741					104	39	4	0	0	0	0.037019	2	7705	7656;7705		57.722	23.32	1	3955400			54268	6983	31024	31025	66501;66502	66502					0.03793735714225477
VQPSKYHFL	9	Unmodified	_VQPSKYHFL_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.8031005859375	2	559.803291	1117.59203	0.32134	0.00017989	-0.48485	-0.00027142	-0.16351	-9.1534E-05	559.8028516191973	37.337	1.1197	37.43	37.17	38.29	0.093014					102	40	4	0	0	0	0.04299	3	7665	7632;7665;7712		55.503	24.41	1	4343000			54269	6983	31024	31025	66503;66504;66505	66504					0.03793735714225477
VQPSLFYHL	9	Unmodified	_VQPSLFYHL_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2981567382812	2	552.297842	1102.58113	0.404	0.00022313	0.39673	0.00021911	0.80073	0.00044224	552.2979317944965	62.394	1.2626	62.385	61.979	63.242	-0.0085564					137	46	5	0	0	0	0.0024096	2	15409	15366;15409		106.94	63.168	1	6822400			54270	4462	31025	31026	66506;66507	66507					0.03394333339952027
VQPSLFYHL	9	Unmodified	_VQPSLFYHL_					0	0	0		ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-3|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	ENSG00000142733|ENST00000357582|MAP3K6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	552.297842	1102.58113	0.42839	0.0002366	0.39762	0.0002196	0.82601	0.0004562	552.29795444422	62.435	1.6994	62.435	61.996	63.695	0	0.016715	-3.1836E-06	NaN	106.94	145	62	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6657600			54271	4462	31025	31026							0.03394333339952027
VQPTATFATL	10	Unmodified	_VQPTATFATL_					0	0	0			REV__RECQL5|p.A193_T194insF|1|0.07|ENSG00000108469|chr17:75662670-75662671|-/AAA|inframe_insertion	REV__RECQL5|p.A193_T194insF|1|0.07|ENSG00000108469|chr17:75662670-75662671|-/AAA|inframe_insertion	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7999877929688	2	524.787307	1047.56006	0.5702	0.00029923	0.32474	0.00017042	0.89493	0.00046965	524.7873628688952	71.813	0.29953	71.813	71.664	71.963	0					21	10	3	0	0	0	0.24105	1	18302	18302		27.629	1.3607	1	216560	+		54272	23299	31026	31027	66508	66508					0.038183232404207956
VQPTGLREI	9	Unmodified	_VQPTGLREI_					0	0	0			REV__ENST00000522892.1_1_5:156788429-156810457:+|nuORF	REV__ENST00000522892.1_1_5:156788429-156810457:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.2586975097656	2	506.792924	1011.57129	0.4367	0.00022131	-1.3917	-0.0007053	-0.95501	-0.00048399	507.29337206104293	42.035	0.39309	42.12	41.959	42.352	0.085201					20	13	2	0	0	0	0.23784	1	9107	9107		13.906	2.2658	1	245840	+		54273	21920	31027	31028	66509	66509					0.06597145334569632
VQPVELPVT	9	Unmodified	_VQPVELPVT_					0	0	0			REV__ENSG00000169857|ENST00000306730|AVEN	REV__ENSG00000169857|ENST00000306730|AVEN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.284423828125	2	491.2844	980.554247	0.42741	0.00020998	-0.093472	-4.5921E-05	0.33393	0.00016406	491.2842844089729	71.646	1.1399	71.618	71.288	72.428	-0.027275					63	40	2	0	0	0	0.051692	1	18272	18272		52.268	10.429	1	879830	+		54274	17545	31028	31029	66510	66510					0.06319224728770223
VQPYQIVF	8	Unmodified	_VQPYQIVF_					0	0	0		ENSG00000155961|ENST00000369454|RAB39B	ENSG00000155961|ENST00000369454|RAB39B	ENSG00000155961|ENST00000369454|RAB39B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.27362060546875	2	497.273835	992.533118	0.40607	0.00020193	-0.12866	-6.398E-05	0.27741	0.00013795	497.27339354232726	79.839	1.0068	79.9	79.335	80.342	0.061409					80	38	3	0	0	0	0.42758	1	20815	20815		13.508	0	1	301890			54275	5207	31029	31030	66511	66511					0.03655259419895174
VQQGGLGQAL	10	Unmodified	_VQQGGLGQAL_					0	0	0		ENST00000529654.5_1_8:145616841-145618286:+|nuORF	ENST00000529654.5_1_8:145616841-145618286:+|nuORF	ENST00000529654.5_1_8:145616841-145618286:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7693786621094	2	485.769448	969.524344	0.046909	2.2787E-05	0.060809	2.9539E-05	0.10772	5.2326E-05	485.7693653262258	29.775	0.41119	29.789	29.594	30.005	0.013474					28	13	3	0	0	0	0.31867	1	5384	5384		18.146	1.9972	1	153990			54276	11605	31030	31031	66512	66512					0.03836285783427229
VQQGQVAIQ	9	Unmodified	_VQQGQVAIQ_					0	0	0			REV__nc|ENSG00000001167|P23511-2|NFYA	REV__nc|ENSG00000001167|P23511-2|NFYA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7884216308594	2	485.769448	969.524344	-0.045581	-2.2142E-05	2.0987	0.0010195	2.0531	0.00099734	485.77048684114465	39.733	0.83642	39.733	39.268	40.104	0					50	30	2	0	0	0	0.2322	1	8368	8368		20.454	2.3073	1	254380	+		54277	13314	31031	31032	66513	66513					0.03836285783427229
VQQTIHWLF	9	Unmodified	_VQQTIHWLF_					0	0	0		nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3;ENST00000535479.5_1_12:7086310-7087113:-|nuORF	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.7767944335938	2	586.316566	1170.61858	0.17787	0.00010429	-0.47208	-0.00027679	-0.29421	-0.0001725	586.3160803955082	69.644	0.49246	69.644	69.428	69.92	0					29	17	2	0	0	0	0.23749	1	17628	17628		15.248	5.901	1	211140			54278	12650	31032	31033	66514	66514					0.04009424605555978
VQQTIHWLF	9	Unmodified	_VQQTIHWLF_					0	0	0		nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3;ENST00000535479.5_1_12:7086310-7087113:-|nuORF	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.7770385742188	2	586.316566	1170.61858	0.11919	6.9883E-05	-0.36407	-0.00021346	-0.24488	-0.00014358	586.3162333615361	69.587	0.53422	69.653	69.487	70.021	0.066048					27	18	2	0	0	0	0.21538	1	17614	17614		26.268	12.362	1	248440			54279	12650	31032	31033	66515	66515					0.04009424605555978
VQQTIHWLF	9	Unmodified	_VQQTIHWLF_					0	0	0		nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENSG00000111684|ENST00000261407|LPCAT3;ENST00000535479.5_1_12:7086310-7087113:-|nuORF	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	nc|ENSG00000111684|Q6P1A2-2|LPCAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.77685546875	2	586.316566	1170.61858	0.26724	0.00015669	-0.64145	-0.00037609	-0.37421	-0.0002194	586.3160241219773	69.696	0.42317	69.674	69.462	69.886	-0.022087					27	15	2	0	0	0	0.24787	1	17629	17629		15.248	5.901	1	219910			54280	12650	31032	31033	66516	66516					0.04009424605555978
VQRFLRDR	8	Unmodified	_VQRFLRDR_					0	0	0			REV__ENSG00000121053|ENST00000225371|EPX	REV__ENSG00000121053|ENST00000225371|EPX	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.31689453125	2	545.317432	1088.62031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.21	1	116.19	115.69	116.69	-0.022781								0	0	0	0.37992	1	30111	30111		0.79363	0	1		+		54281	15107	31033	31034	66517	66517					0.07954478414171717
VQRLASRVNV	10	Unmodified	_VQRLASRVNV_					0	0	0		ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.3139038085938	2	571.343646	1140.67274	0.17275	9.8699E-05	-0.59922	-0.00034236	-0.42647	-0.00024366	571.3432996150631	18.5	0.42998	18.382	18.184	18.614	-0.11739					23	14	2	0	0	0	0.39009	1	1980	1980		5.2969	1.1074	1	60394			54282	7603	31034	31035	66518	66518					0.10803016757108708
VQRMFEKTTL	10	Unmodified	_VQRMFEKTTL_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.83984375	2	626.839548	1251.66454	0.27328	0.0001713	0.59288	0.00037164	0.86616	0.00054294	626.8397519770681	79.675	0.64098	79.646	79.443	80.084	-0.028923					61	23	3	0	0	0	0.38515	1	20693	20693		6.2058	0	1	723380	+		54283	18951	31035	31036	66519	66519					0.04877701725490624
VQRRHQKI	8	Unmodified	_VQRRHQKI_					0	0	0		ENSG00000078070|ENST00000265594|MCCC1;ENST00000495767.5_1_3:182740340-182790239:-|nuORF;nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	ENSG00000078070|ENST00000265594|MCCC1;nc|ENSG00000278540|Q13085-3|ACACA	ENSG00000078070|ENST00000265594|MCCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.236572265625	2	532.825424	1063.63629	0.45956	0.00024487	1.7782	0.00094746	2.2377	0.0011923	532.8264586176581	17.045	0.2543	17.045	16.867	17.122	0					13	8	2	0	0	0	0.34437	1	1520	1520		0.69038	0	1	30821			54284	1103;8743	31036	31037	66520	66520					0.107021846510861
VQRRLRHVWGF	11	Unmodified	_VQRRLRHVWGF_					0	0	0			REV__nc|ENSG00000134440|O43776-2|NARS1	REV__nc|ENSG00000134440|O43776-2|NARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003845214844	3	485.2811	1452.82147	0.14667	7.1176E-05	1.6233	0.00078777	1.77	0.00085895	485.61629415593853	52.484	0.36558	52.483	52.274	52.639	-0.00080872					19	12	2	0	0	0	0.33287	1	12355	12355		0.45452	0	1	367570	+		54285	22994	31037	31038	66521	66521					0.1131716745067024
VQRVQNHAIL	10	Unmodified	_VQRVQNHAIL_					0	0	0			REV__ENSG00000141736|ENST00000269571|ERBB2	REV__ENSG00000141736|ENST00000269571|ERBB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3438720703125	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.1	1	119.08	118.58	119.58	-0.024147								0	0	0	0.38166	1	30757	30757		1.4819	0	1		+		54286	16092	31038	31039	66522	66522					0.09147016757128767
VQSAITEPR	9	Unmodified	_VQSAITEPR_					0	0	0		ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.3136291503906	2	500.774731	999.534909	0.089327	4.4733E-05	0.023868	1.1952E-05	0.1132	5.6685E-05	500.7747233388228	25.687	0.41726	25.665	25.416	25.833	-0.022236					23	14	2	0	0	0	0.17242	1	4052	4052		36.127	13.391	1	220660			54287	4242	31039	31040	66523	66523					0.03512268437839339
VQSFRYDVVL	10	Unmodified	_VQSFRYDVVL_					0	0	0		ENSG00000130349|ENST00000311381|MTRES1	ENSG00000130349|ENST00000311381|MTRES1	ENSG00000130349|ENST00000311381|MTRES1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.2244873046875	3	409.224034	1224.65027	0.44783	0.00018326	-0.13858	-5.6712E-05	0.30924	0.00012655	409.22389823154924	47.837	1.1729	47.885	47.428	48.601	0.047523					119	43	4	0	0	0	0.35624	2	10823	10823;10919		11.518	1.3673	1	8502900			54288	3471	31040	31041	66524;66525	66524					0.04693372568840459
VQSRPPAPLS	10	Unmodified	_VQSRPPAPLS_					0	0	0		ENST00000563885.5_1_16:67862648-67864187:-|nuORF	ENST00000563885.5_1_16:67862648-67864187:-|nuORF	ENST00000563885.5_1_16:67862648-67864187:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.808837890625	2	526.298373	1050.58219	0.13006	6.8448E-05	0.89035	0.00046859	1.0204	0.00053704	526.2989546362131	28.117	0.47248	28.117	27.849	28.322	0.0004673					28	16	2	0	0	0	0.24105	1	4848	4848		27.629	1.3607	1	199210			54289	11936	31041	31042	66526	66526					0.05892547708845086
VQSSELEAK	9	Unmodified	_VQSSELEAK_					0	0	0			REV__ENST00000598360.5_1_19:4722635-4722716:-|nuORF	REV__ENST00000598360.5_1_19:4722635-4722716:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7721252441406	2	495.758746	989.50294	0.32459	0.00016092	-0.19505	-9.6695E-05	0.12954	6.4221E-05	495.7587517511763	26.111	0.46442	26.089	25.945	26.409	-0.022238					41	16	4	0	0	0	0.19747	1	4227	4227		24.021	2.2739	1	238800	+		54290	22616	31042	31043	66527	66527					0.007768559640453532
VQSSGHRQ	8	Unmodified	_VQSSGHRQ_					0	0	0			REV__ENSG00000143520|ENST00000388718|FLG2	REV__ENSG00000143520|ENST00000388718|FLG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.598876953125	2	449.728115	897.441677	-0.040579	-1.8249E-05	2.0657	0.00092899	2.0251	0.00091074	449.72789774389065	15.17	0.11022	15.06	14.982	15.093	-0.10981					5	3	2	0	0	0	0.34408	1	944	944		2.3027	0	1	12846	+	+	54291	13272	31043	31044	66528	66528					-0.011146112247161
VQTKDYTI	8	Unmodified	_VQTKDYTI_					0	0	0		ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.7663269042969	2	484.258382	966.502212	-0.056702	-2.7459E-05	-0.47442	-0.00022974	-0.53113	-0.0002572	484.2580844547822	38.523	0.5538	38.523	38.377	38.931	0					37	19	2	0	0	0	0.30795	1	8070	8070		30.637	8.8899	1	530320			54292	7575	31044	31045	66529	66529					0.017620613149915698
VQTKDYTI	8	Unmodified	_VQTKDYTI_					0	0	0		ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	ENSG00000185972|ENST00000335119|CCIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7663879394531	2	484.258382	966.502212	0.3607	0.00017467	-0.61176	-0.00029625	-0.25107	-0.00012158	484.2580286564111	38.448	0.48954	38.546	38.378	38.867	0.097527					32	17	2	0	0	0	0.28769	1	8032	8032		30.637	2.142	1	550870			54293	7575	31044	31045	66530	66530					0.017620613149915698
VQTRPIPS	8	Unmodified	_VQTRPIPS_					0	0	0			REV__ENSG00000106483|ENST00000436072|SFRP4	REV__ENSG00000106483|ENST00000436072|SFRP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	449.7822570800781	2	449.261259	896.507966	-0.14594	-6.5565E-05	-0.39526	-0.00017757	-0.5412	-0.00024314	449.2608446757338	12.939	0.19583	12.84	12.729	12.924	-0.09929					11	6	2	0	0	0	0.34437	1	245	245		0.69038	0	1	24843	+		54294	14525	31045	31046	66531	66531					0.055572046173210765
VQTRPIPS	8	Unmodified	_VQTRPIPS_					0	0	0			REV__ENSG00000106483|ENST00000436072|SFRP4	REV__ENSG00000106483|ENST00000436072|SFRP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	449.261259	896.507966	-0.12783	-5.7429E-05	-0.45651	-0.00020509	-0.58434	-0.00026252	449.26087919488157	12.907	0.22616	12.907	12.751	12.977	0	0.033544	-3.9452E-05	NaN	0.69038	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18954	+		54295	14525	31045	31046							0.055572046173210765
VQVAGKAER	9	Unmodified	_VQVAGKAER_					0	0	0		ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6	ENST00000489330.6_1_X:11156985-11160533:-|nuORF	ENST00000489330.6_1_X:11156985-11160533:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2774353027344	2	479.277441	956.540328	0.1868	8.9531E-05	0.095213	4.5634E-05	0.28202	0.00013516	479.27736151521805	74.127	3.7807	74.127	72.586	76.367	0					370	134	4	0	0	0	0.26612	2	19071	19026;19071		13.906	3.8321	1	4891400			54296	637	31046	31047	66532;66533	66533					0.06031992020314192
VQVAGKAER	9	Unmodified	_VQVAGKAER_					0	0	0		ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6	ENST00000489330.6_1_X:11156985-11160533:-|nuORF	ENST00000489330.6_1_X:11156985-11160533:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2773742675781	2	479.277441	956.540328	0.20707	9.9242E-05	0.063652	3.0507E-05	0.27072	0.00012975	479.27735198558173	73.913	2.9622	73.965	73.226	76.188	0.052361					318	106	3	0	0	0	0.29176	4	18767	18767;18900;18996;19041		10.074	4.4861	1	5051400			54297	637	31046	31047	66534;66535;66536;66537	66534					0.06031992020314192
VQVAGKAER	9	Unmodified	_VQVAGKAER_					0	0	0		ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6	ENST00000489330.6_1_X:11156985-11160533:-|nuORF	ENST00000489330.6_1_X:11156985-11160533:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.27764892578125	2	479.277441	956.540328	0.31867	0.00015273	-0.019674	-9.4295E-06	0.299	0.0001433	479.27730538761404	74.074	3.3857	74.044	73.152	76.538	-0.030663					252	123	3	0	0	0	0.26612	8	19018	18830;18879;18923;18969;19018;19061;19105;19155		13.906	5.9959	1	4993700			54298	637	31046	31047	66538;66539;66540;66541;66542;66543;66544;66545	66542					0.06031992020314192
VQVAGKAER	9	Unmodified	_VQVAGKAER_					0	0	0		ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6	ENST00000489330.6_1_X:11156985-11160533:-|nuORF	ENST00000489330.6_1_X:11156985-11160533:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2774353027344	2	479.277441	956.540328	0.39285	0.00018828	-0.28276	-0.00013552	0.11009	5.2763E-05	479.2772159021679	75.409	1.3658	75.378	75.005	76.37	-0.031487					98	50	2	0	0	0	0.29176	1	19347	19347		10.074	2.1638	1	2627700			54299	637	31046	31047	66546	66546					0.06031992020314192
VQVELIPEKKG	11	Unmodified	_VQVELIPEKKG_					0	0	0		ENSG00000106266|ENST00000222990|SNX8;ENST00000494722.1_1_7:2314657-2354074:-|nuORF	ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.372314453125	2	620.368995	1238.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.073	1	99.066	98.566	99.566	-0.006897								0	0	0	0.37707	1	26542	26542		2.2828	0	1				54300	2066	31047	31048	66547	66547					0.11362501291432636
VQVFVDSLL	9	Unmodified	_VQVFVDSLL_					0	0	0			REV__ENST00000515213.1_1_7:419399-420934:+|nuORF	REV__ENST00000515213.1_1_7:419399-420934:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.27386474609375	2	510.292225	1018.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.796	1	79.796	79.296	80.296	0								0	0	0	0.22065	1	20709	20709		15.847	3.3156	1		+		54301	21840	31048	31049	66548	66548					0.061355112458159056
VQVFVDSLL	9	Unmodified	_VQVFVDSLL_					0	0	0			REV__ENST00000515213.1_1_7:419399-420934:+|nuORF	REV__ENST00000515213.1_1_7:419399-420934:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2738342285156	2	510.292225	1018.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.955	1	79.955	79.455	80.455	0								0	0	0	0.22065	1	20758	20758		15.847	0	1		+		54302	21840	31048	31049	66549	66549					0.061355112458159056
VQVFVRRFQ	9	Unmodified	_VQVFVRRFQ_					0	0	0			REV__ENSG00000183840|ENST00000329321|GPR39	REV__ENSG00000183840|ENST00000329321|GPR39	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8453369140625	2	589.843282	1177.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.88	1	119.88	119.38	120.38	0								0	0	0	0.2672	1	30912	30912		0.52476	0.066424	1		+		54303	18287	31049	31050	66550	66550					0.09028222108076989
VQVHKELI	8	Unmodified	_VQVHKELI_					0	0	0			REV__ENSG00000143373|ENST00000336715|ZNF687	REV__ENSG00000143373|ENST00000336715|ZNF687	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7642822265625	2	483.292559	964.570566	-0.12727	-6.1507E-05	0.63365	0.00030624	0.50638	0.00024473	483.29286508630673	13.154	0.19557	13.087	12.993	13.189	-0.067496					10	6	2	0	0	0	0.34414	1	328	328		2.0598	0	1	22823	+		54304	16168	31050	31051	66551	66551					0.08686350685513844
VQVIDKVKQ	9	Unmodified	_VQVIDKVKQ_					0	0	0		LTR13A_dup7|chr1:43138776-43139741:+|1.031771637262758|0.2457820778445239|2.07|491.0|45|2|anti-sense	LTR13A_dup7|chr1:43138776-43139741:+|1.031771637262758|0.2457820778445239|2.07|491.0|45|2|anti-sense	LTR13A_dup7|chr1:43138776-43139741:+|1.031771637262758|0.2457820778445239|2.07|491.0|45|2|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3037109375	2	528.824224	1055.63389	0.52938	0.00027995	-3.0008	-0.0015869	-2.4714	-0.0013069	528.8240695387248	23.889	0.71431	23.85	23.651	24.366	-0.038927					52	24	3	0	0	0	0.33719	1	3559	3559		3.2813	0	1	77532			54305	12508	31051	31052	66552	66552					0.10830291402749026
VQVIRTQN	8	Unmodified	_VQVIRTQN_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.27752685546875	2	479.277441	956.540328	0.20707	9.9242E-05	0.063652	3.0507E-05	0.27072	0.00012975	479.27735198558173	73.913	2.9622	73.965	73.226	76.188	0.052361					318	106	3	0	0	0	0.44569	1	19245	19245		7.2892	0	1	5051400			54306	8266	31052	31053	66553	66553					0.060319920203255606
VQVKYLSRVF	10	Unmodified	_VQVKYLSRVF_					0	0	0			REV__ENSG00000113212|ENST00000231137|PCDHB7	REV__ENSG00000113212|ENST00000231137|PCDHB7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8684692382812	2	619.866423	1237.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.863	1	90.863	90.363	91.363	0								0	0	0	0.37319	1	24103	24103		8.7454	3.8484	1		+		54307	14798	31053	31054	66554	66554					0.10894242219501393
VQVLQKKSH	9	Unmodified	_VQVLQKKSH_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2940063476562	2	533.822015	1065.62948	0.44784	0.00023906	2.3166	0.0012366	2.7644	0.0014757	533.822348421828	79.397	0.45773	79.458	79.161	79.618	0.061409					29	20	2	0	0	0	0.25779	1	20551	20551		3.2813	0	1	78371	+		54308	17664	31054	31055	66555	66555					0.09928826979853511
VQVPIAKS	8	Unmodified	_VQVPIAKS_					0	0	0			REV__ENST00000529698.1_1_11:46396583-46398763:+|nuORF	REV__ENST00000529698.1_1_11:46396583-46398763:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.75128173828125	2	421.260728	840.506903	0.010974	4.6227E-06	-3.1996	-0.0013479	-3.1886	-0.0013432	421.25946204431625	80.016	1.1232	80.078	79.394	80.517	0.061409					55	42	2	0	0	0	0.45942	1	20742	20742		2.5775	0	1	204940	+		54309	16450	31055	31056	66556	66556					0.08026990248424681
VQVPIAKS	8	Unmodified	_VQVPIAKS_					0	0	0			REV__ENST00000529698.1_1_11:46396583-46398763:+|nuORF	REV__ENST00000529698.1_1_11:46396583-46398763:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	421.260728	840.506903	-0.063927	-2.693E-05	-3.4148	-0.0014385	-3.4787	-0.0014655	421.2593162484701	80.102	0.79805	80.102	79.742	80.54	0	0.013075	0.00012909	NaN	2.5775	55	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213500	+		54310	16450	31055	31056							0.08026990248424681
VQVPIAKS	8	Unmodified	_VQVPIAKS_					0	0	0			REV__ENST00000529698.1_1_11:46396583-46398763:+|nuORF	REV__ENST00000529698.1_1_11:46396583-46398763:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	421.260728	840.506903	0.06443	2.7142E-05	-3.8608	-0.0016264	-3.7964	-0.0015993	421.2590966480126	80.114	0.89912	80.088	79.698	80.597	-0.026825	-0.0016828	-0.00024669	NaN	2.5775	48	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295430	+		54311	16450	31055	31056							0.08026990248424681
VQVPQPVRSVK	11	Unmodified	_VQVPQPVRSVK_					0	0	0			REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5726318359375	3	412.918945	1235.73501	0.15657	6.465E-05	4.2976	0.0017745	4.4541	0.0018392	413.25584016949944	28.709	0.18597	28.705	28.629	28.815	-0.0042572					8	5	2	0	0	0	0.33189	1	5030	5030		5.8681	2.0222	1	63087	+		54312	14284	31056	31057	66557	66557					0.12656743105435453
VQVQVGQR	8	Unmodified	_VQVQVGQR_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2647399902344	2	457.264333	912.514114	0.094187	4.3068E-05	0.14049	6.4242E-05	0.23468	0.00010731	457.2642918314604	73.069	2.092	73.069	72.639	74.731	0					160	73	4	0	0	0	0.45307	1	19118	19118		4.756	0	1	2003800	+		54313	17534	31057	31058	66558	66558					0.05435722848858404
VQVRAHPKKD	10	Unmodified	_VQVRAHPKKD_					0	0	0		ENST00000603137.1_1_2:28238673-28239105:-|nuORF	ENST00000603137.1_1_2:28238673-28239105:-|nuORF	ENST00000603137.1_1_2:28238673-28239105:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3445434570312	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.85	1	116.87	116.37	117.37	0.020988								0	0	0	0.38166	1	30309	30309		1.4819	0	1				54314	12272	31058	31059	66559	66559					0.09147016757128767
VQVRHGLQLGA	11	Unmodified	_VQVRHGLQLGA_					0	0	0		ENST00000426871.1_1_1:151262664-151263682:+|nuORF;ENSG00000143373|ENST00000336715|ZNF687	ENST00000426871.1_1_1:151262664-151263682:+|nuORF	ENST00000426871.1_1_1:151262664-151263682:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.34375	2	589.343646	1176.67274	0.38128	0.00022471	-0.79684	-0.00046961	-0.41556	-0.00024491	589.3432116322725	96.957	1.2457	96.952	96.744	97.99	-0.0055466					169	129	2	0	0	0	0.46475	1	25894	25894		2.7352	0.23671	1	176000			54315	4505	31059	31060	66560	66560					0.09147016757151505
VQVSHAKGPRV	11	Unmodified	_VQVSHAKGPRV_					0	0	0			REV__ENSG00000225781|ENST00000418316|OR6V1	REV__ENSG00000225781|ENST00000418316|OR6V1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3430786132812	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.669	1	94.752	94.252	95.252	0.082779								0	0	0	0.36982	1	25257	25257		3.8763	0.27984	1		+		54316	19117	31060	31061	66561	66561					0.09147016757128767
VQWPYFLP	8	Unmodified	_VQWPYFLP_					0	0	0			REV__ENST00000514312.1_1_5:10415712-10417549:+|nuORF	REV__ENST00000514312.1_1_5:10415712-10417549:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.759033203125	2	525.276378	1048.5382	0.29996	0.00015756	-0.5343	-0.00028065	-0.23434	-0.00012309	525.775263883064	19.203	0.70991	19.203	18.864	19.574	0					46	24	3	0	0	0	0.43727	1	2210	2210		10.183	0	1	88179	+		54317	21736	31061	31062	66562	66562					0.015875632825100183
VQYAIKNIFK	10	Unmodified	_VQYAIKNIFK_					0	0	0		ENST00000559835.5_1_15:80412732-80412831:+|nuORF	ENST00000559835.5_1_15:80412732-80412831:+|nuORF	ENST00000559835.5_1_15:80412732-80412831:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2242126464844	3	408.576408	1222.70739	0.19579	7.9996E-05	0.22956	9.3792E-05	0.42535	0.00017379	408.57637502653415	47.841	0.46754	47.841	47.519	47.987	0					36	16	3	0	0	0	0.097973	1	10882	10882		48.073	36.555	1	2677300			54318	11889	31062	31063	66563	66563					0.10494839845205206
VQYAIKNIFK	10	Unmodified	_VQYAIKNIFK_					0	0	0		ENST00000559835.5_1_15:80412732-80412831:+|nuORF	ENST00000559835.5_1_15:80412732-80412831:+|nuORF	ENST00000559835.5_1_15:80412732-80412831:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.5766906738281	3	408.576408	1222.70739	0.35452	0.00014485	0.033979	1.3883E-05	0.3885	0.00015873	408.5763862143693	47.738	0.61937	47.785	47.482	48.101	0.04752					51	22	4	0	0	0	0.01159	1	10836	10836		80.896	52.662	1	2097700			54319	11889	31062	31063	66564	66564					0.10494839845205206
VQYAIKNIFK	10	Unmodified	_VQYAIKNIFK_					0	0	0		ENST00000559835.5_1_15:80412732-80412831:+|nuORF	ENST00000559835.5_1_15:80412732-80412831:+|nuORF	ENST00000559835.5_1_15:80412732-80412831:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.5765380859375	3	408.576408	1222.70739	0.29375	0.00012002	0.11327	4.6279E-05	0.40701	0.0001663	408.5764000219576	47.712	0.50623	47.755	47.48	47.987	0.04332					43	18	3	0	0	0	0.067194	1	10821	10821		55.249	35.623	1	2322800			54320	11889	31062	31063	66565	66565					0.10494839845205206
VQYIVLQNIA	10	Unmodified	_VQYIVLQNIA_					0	0	0		AP3B1|p.K923Nfs*4|1|0.36|ENSG00000132842|chr5:78039083-78039083|T/-|frameshift_variant;nc|ENSG00000132842|O00203-3|AP3B1;ENSG00000132842|ENST00000255194|AP3B1	AP3B1|p.K923Nfs*4|1|0.36|ENSG00000132842|chr5:78039083-78039083|T/-|frameshift_variant	AP3B1|p.K923Nfs*4|1|0.36|ENSG00000132842|chr5:78039083-78039083|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8350830078125	2	580.837331	1159.66011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.005	1	91.096	90.596	91.596	0.090668								0	0	0	0.37664	1	24137	24137		3.5965	0.31518	1				54321	48	31063	31064	66566	66566					0.0866656057421551
VQYPYHGYWFP	11	Unmodified	_VQYPYHGYWFP_					0	0	0			REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	REV__nc|ENSG00000166535|A8K2U0-2|A2ML1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.75909423828125	3	486.227667	1455.66117	-0.012599	-6.1261E-06	0.82205	0.0003997	0.80945	0.00039358	486.22823905110795	18.474	0.4521	18.416	18.087	18.539	-0.058174					39	15	4	0	0	0	0.33287	1	1954	1954		2.8433	0.21205	1	65478	+		54322	17329	31064	31065	66567	66567					-0.04843225056879419
VQYPYQLYI	9	Unmodified	_VQYPYQLYI_					0	0	0		nc|ENSG00000196323|Q8NCP5-3|ZBTB44;nc|ENSG00000196323|Q8NCP5-4|ZBTB44;nc|ENSG00000196323|Q8NCP5-2|ZBTB44;nc|ENSG00000196323|Q8NCP5|ZBTB44;ENSG00000196323|ENST00000357899|ZBTB44	nc|ENSG00000196323|Q8NCP5-3|ZBTB44	nc|ENSG00000196323|Q8NCP5-3|ZBTB44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8291015625	2	593.810782	1185.60701	0.78392	0.0004655	-0.46175	-0.00027419	0.32217	0.00019131	593.8100972396353	77.593	0.32729	77.593	77.444	77.771	0					16	11	2	0	0	0	0.22188	1	20066	20066		20.454	2.3073	1	86985			54323	7847	31065	31066	66568	66568					0.021631827915825852
VQYPYQLYI	9	Unmodified	_VQYPYQLYI_					0	0	0		nc|ENSG00000196323|Q8NCP5-3|ZBTB44;nc|ENSG00000196323|Q8NCP5-4|ZBTB44;nc|ENSG00000196323|Q8NCP5-2|ZBTB44;nc|ENSG00000196323|Q8NCP5|ZBTB44;ENSG00000196323|ENST00000357899|ZBTB44	nc|ENSG00000196323|Q8NCP5-3|ZBTB44	nc|ENSG00000196323|Q8NCP5-3|ZBTB44	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8291015625	2	593.810782	1185.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.792	1	77.761	77.261	78.261	-0.031334								0	0	0	0.20639	1	20081	20081		20.454	2.3073	1				54324	7847	31065	31066	66569	66569					0.021631827915825852
VQYSLNRLL	9	Unmodified	_VQYSLNRLL_					0	0	0			REV__ENSG00000198561|ENST00000399050|CTNND1	REV__ENSG00000198561|ENST00000399050|CTNND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.269775390625	2	553.321848	1104.62914	0.45769	0.00025325	-1.3953	-0.00077205	-0.93761	-0.0005188	553.3206735773938	63.49	0.15531	63.482	63.408	63.564	-0.0085526					8	5	2	0	0	0	0.13898	1	15733	15733		36.127	0	1	392150	+		54325	18833	31066	31067	66570	66570					0.08101407260005544
VRAARNKA	8	Unmodified	_VRAARNKA_					0	0	0			REV__ENST00000414932.1_1_7:43908445-43909104:-|nuORF	REV__ENST00000414932.1_1_7:43908445-43909104:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.27264404296875	2	443.272493	884.530432	0.5119	0.00022691	-0.22703	-0.00010064	0.28487	0.00012627	443.27235334962035	77.389	1.9477	77.389	76.931	78.879	0					195	72	5	0	0	0	0.45942	2	20011	20011;20063		2.5775	0	1	7784300	+		54326	13632	31067	31068	66571;66572	66571					0.08354848805595338
VRAARNKA	8	Unmodified	_VRAARNKA_					0	0	0			REV__ENST00000414932.1_1_7:43908445-43909104:-|nuORF	REV__ENST00000414932.1_1_7:43908445-43909104:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.2724609375	2	443.272493	884.530432	0.40774	0.00018074	-0.15749	-6.9813E-05	0.25025	0.00011093	443.27237097457316	77.375	1.9004	77.43	76.833	78.733	0.055412					170	68	5	0	0	0	0.45942	1	20053	20053		2.5775	0	1	6461700	+		54327	13632	31067	31068	66573	66573					0.08354848805595338
VRACLRRLVPP	11	Unmodified	_VRACLRRLVPP_					0	0	0		nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT;nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT	nc|ENSG00000164362|O14746-4|TERT	nc|ENSG00000164362|O14746-4|TERT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.3934326171875	2	640.392616	1278.77068	0.73966	0.00047367	0.45684	0.00029256	1.1965	0.00076623	640.392743798799	47.806	1.1129	47.849	47.53	48.643	0.043324					107	41	3	0	0	0	0.47713	1	10828	10828		2.7352	0	1	4434000			54328	5839	31068	31069	66574	66574					0.14244502081464816
VRAFYCERRR	10	Unmodified	_VRAFYCERRR_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.89947509765625	3	452.575295	1354.70406	-0.019346	-8.7555E-06	-1.422	-0.00064355	-1.4413	-0.00065231	452.5744854533831	17.561	0.45142	17.443	17.18	17.631	-0.11739					24	15	3	0	0	0	0.40943	1	1669	1669		1.7423	0	1	37247			54329	8060	31069	31070	66575	66575					0.0408926651953152
VRAGAPAKK	9	Unmodified	_VRAGAPAKK_					0	0	0		ENST00000485891.1_1_2:75745265-75787829:-|nuORF	ENST00000485891.1_1_2:75745265-75787829:-|nuORF	ENST00000485891.1_1_2:75745265-75787829:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.8641662597656	2	449.285069	896.555585	-0.014056	-6.3151E-06	0.37933	0.00017043	0.36527	0.00016411	449.28508618091865	23.126	0.57507	23.126	22.815	23.39	0					31	19	2	0	0	0	0.26168	1	3284	3284		1.8442	1.1539	1	102090			54330	11101	31070	31071	66576	66576					0.10316903608179473
VRAGAPAKK	9	Unmodified	_VRAGAPAKK_					0	0	0		ENST00000485891.1_1_2:75745265-75787829:-|nuORF	ENST00000485891.1_1_2:75745265-75787829:-|nuORF	ENST00000485891.1_1_2:75745265-75787829:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	449.285069	896.555585	0.18559	8.3381E-05	-0.049233	-2.212E-05	0.13635	6.1261E-05	449.28493542373764	23.206	0.57543	23.161	22.925	23.5	-0.044867	0.026533	-0.000253	NaN	1.8442	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131280			54331	11101	31070	31071							0.10316903608179473
VRAGASIRLF	10	Unmodified	_VRAGASIRLF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3170776367188	2	545.330008	1088.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.425	1	92.426	91.926	92.926	0.00046539								0	0	0	0.35611	1	24576	24576		12.241	0.60036	1				54332	5186	31071	31072	66577	66577					0.10468533216749165
VRALPLLL	8	Unmodified	_VRALPLLL_					0	0	0		NOTCH3|p.E1812Rfs*13|1|0.35|ENSG00000074181|chr19:15166020-15166020|C/-|frameshift_variant;ENSG00000074181|ENST00000263388|NOTCH3	NOTCH3|p.E1812Rfs*13|1|0.35|ENSG00000074181|chr19:15166020-15166020|C/-|frameshift_variant	NOTCH3|p.E1812Rfs*13|1|0.35|ENSG00000074181|chr19:15166020-15166020|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.81060791015625	2	447.810388	893.606223	0.46617	0.00020876	-0.26181	-0.00011724	0.20436	9.1513E-05	447.8101396115343	74.693	0.84859	74.661	74.387	75.235	-0.031487					56	30	3	0	0	0	0.35375	1	19100	19100		24.674	0	1	940440			54333	1014	31072	31073	66578	66578					0.15516432933191027
VRALREPERI	10	Unmodified	_VRALREPERI_					0	0	0		ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	ENSG00000204478|ENST00000602960|PRAMEF20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.86962890625	2	619.870028	1237.7255	0.29926	0.0001855	-0.83596	-0.00051819	-0.5367	-0.00033269	619.8692725486243	90.707	0.81126	90.707	90.123	90.934	0					111	64	3	0	0	0	0.40532	1	23984	23984		2.4985	0	1	284010			54334	8231	31073	31074	66579	66579					0.11614974819917734
VRALVFLFVN	10	Unmodified	_VRALVFLFVN_					0	0	0			REV__ENST00000411991.5_1_2:103340290-103347510:-|nuORF	REV__ENST00000411991.5_1_2:103340290-103347510:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3428955078125	2	589.358234	1176.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.62	1	97.62	97.12	98.12	0								0	0	0	0.38166	1	26111	26111		1.4819	0	1		+		54335	15773	31074	31075	66580	66580					0.12063161053424665
VRALVFLFVN	10	Unmodified	_VRALVFLFVN_					0	0	0			REV__ENST00000411991.5_1_2:103340290-103347510:-|nuORF	REV__ENST00000411991.5_1_2:103340290-103347510:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3429565429688	2	589.358234	1176.70191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.614	1	95.691	95.191	96.191	0.077408								0	0	0	0.37739	1	25541	25541		3.2813	0	1		+		54336	15773	31074	31075	66581	66581					0.12063161053424665
VRANARRLPA	10	Unmodified	_VRANARRLPA_					0	0	0		ENSG00000180739|ENST00000333430|S1PR5	ENSG00000180739|ENST00000333430|S1PR5	ENSG00000180739|ENST00000333430|S1PR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3431396484375	2	562.343981	1122.67341	0.26073	0.00014662	-0.83537	-0.00046976	-0.57463	-0.00032314	562.343553068934	80.466	2.1466	80.466	79.411	81.558	0					378	89	5	0	0	0	0.38233	7	20702	20702;20746;20798;20987;21031;21121;21162		6.7232	6.7232	1	16129000			54337	7197	31075	31076	66582;66583;66584;66585;66586;66587;66588	66582					0.11697856196838075
VRANARRLPA	10	Unmodified	_VRANARRLPA_					0	0	0		ENSG00000180739|ENST00000333430|S1PR5	ENSG00000180739|ENST00000333430|S1PR5	ENSG00000180739|ENST00000333430|S1PR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.34326171875	2	562.343981	1122.67341	0.20628	0.000116	-0.76416	-0.00042972	-0.55788	-0.00031372	562.3435873199479	80.295	3.1196	80.36	79.444	82.564	0.065094					520	132	5	0	0	0	0.38233	13	20722	20722;20772;20867;20915;20963;21010;21053;21094;21180;21232;21321;21368;21420		6.7232	6.7232	1	13068000			54338	7197	31075	31076	66589;66590;66591;66592;66593;66594;66595;66596;66597;66598;66599;66600;66601	66589					0.11697856196838075
VRATNACIQKL	11	Unmodified	_VRATNACIQKL_					0	0	0			REV__ENST00000198767.10_1_16:15154396-15154894:-|nuORF	REV__ENST00000198767.10_1_16:15154396-15154894:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.8475952148438	2	608.845165	1215.67578	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.38	1	81.356	80.856	81.856	-0.02404								0	0	0	0.35909	1	21177	21177		4.5289	0	1		+		54339	19394	31076	31077	66602	66602					0.07656523819628092
VRCRLLPRAFL	11	Unmodified	_VRCRLLPRAFL_					0	0	0		nc|ENSG00000157119|Q2TBA0-2|KLHL40;ENSG00000157119|ENST00000287777|KLHL40	nc|ENSG00000157119|Q2TBA0-2|KLHL40	nc|ENSG00000157119|Q2TBA0-2|KLHL40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.6082458496094	3	448.607936	1342.80198	0.37894	0.00016999	0.34538	0.00015494	0.72431	0.00032493	448.6081172712055	87.888	0.7958	87.888	87.584	88.38	0					105	40	4	0	0	0	0.47545	1	23180	23180		1.3296	0	1	982000			54340	5282	31077	31078	66603	66603					0.14429075115572232
VRCRLLPRAFL	11	Unmodified	_VRCRLLPRAFL_					0	0	0		nc|ENSG00000157119|Q2TBA0-2|KLHL40;ENSG00000157119|ENST00000287777|KLHL40	nc|ENSG00000157119|Q2TBA0-2|KLHL40	nc|ENSG00000157119|Q2TBA0-2|KLHL40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.6082458496094	3	448.607936	1342.80198	0.23663	0.00010615	0.37428	0.0001679	0.6109	0.00027406	448.6081618723246	87.419	1.483	87.506	86.783	88.266	0.087097					212	73	3	0	0	0	0.47545	1	22981	22981		1.3296	0	1	1021200			54341	5282	31077	31078	66604	66604					0.14429075115572232
VRCRLLPRAFL	11	Unmodified	_VRCRLLPRAFL_					0	0	0		nc|ENSG00000157119|Q2TBA0-2|KLHL40;ENSG00000157119|ENST00000287777|KLHL40	nc|ENSG00000157119|Q2TBA0-2|KLHL40	nc|ENSG00000157119|Q2TBA0-2|KLHL40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.6083984375	3	448.607936	1342.80198	0.35393	0.00015878	0.40151	0.00018012	0.75544	0.0003389	448.60814547293876	87.48	2.5537	87.474	85.826	88.379	-0.0056229					336	115	4	0	0	0	0.47545	1	22943	22943		1.3296	0	1	1141000			54342	5282	31077	31078	66605	66605					0.14429075115572232
VRCRLLPRAFL	11	Unmodified	_VRCRLLPRAFL_					0	0	0		nc|ENSG00000157119|Q2TBA0-2|KLHL40;ENSG00000157119|ENST00000287777|KLHL40	nc|ENSG00000157119|Q2TBA0-2|KLHL40	nc|ENSG00000157119|Q2TBA0-2|KLHL40	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	448.607936	1342.80198	0.37894	0.00016999	0.34538	0.00015494	0.72431	0.00032493	448.6081172712055	87.888	0.7958	87.888	87.584	88.38	0	0.19075	-2.4687E-05	NaN	1.3296	105	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	982000			54343	5282	31077	31078							0.14429075115572232
VRCRLLPRAFL	11	Unmodified	_VRCRLLPRAFL_					0	0	0		nc|ENSG00000157119|Q2TBA0-2|KLHL40;ENSG00000157119|ENST00000287777|KLHL40	nc|ENSG00000157119|Q2TBA0-2|KLHL40	nc|ENSG00000157119|Q2TBA0-2|KLHL40	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	448.607936	1342.80198	0.23663	0.00010615	0.37428	0.0001679	0.6109	0.00027406	448.6081618723246	87.419	1.483	87.506	86.783	88.266	0.087097	-0.19075	1.4209E-05	NaN	1.3296	212	73	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1021200			54344	5282	31077	31078							0.14429075115572232
VRDAAAEK	8	Unmodified	_VRDAAAEK_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8881530761719	2	430.235242	858.45593	-0.18558	-7.9842E-05	0.88158	0.00037929	0.696	0.00029944	430.2351492627176	23.506	0.54863	23.431	23.121	23.67	-0.074984					28	19	2	0	0	0	0.34313	1	3394	3394		3.5965	0	1	42183	+		54345	18303	31078	31079	66606	66606					0.02104041203563156
VRDDGAPVLS	10	Unmodified	_VRDDGAPVLS_					0	0	0		LTR19B_dup80|chr6:106743802-106744351:-|4.284117748742692|0.4191254365420057|3.35|537.0|28|2|anti-sense	LTR19B_dup80|chr6:106743802-106744351:-|4.284117748742692|0.4191254365420057|3.35|537.0|28|2|anti-sense	LTR19B_dup80|chr6:106743802-106744351:-|4.284117748742692|0.4191254365420057|3.35|537.0|28|2|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7723999023438	2	514.772188	1027.52982	-0.38738	-0.00019941	0.20797	0.00010706	-0.17942	-9.2359E-05	514.7720173629284	35.379	0.91635	35.456	34.893	35.809	0.077377					49	32	3	0	0	0	0.18128	1	7069	7069		34.932	0	1	798030			54346	12510	31079	31080	66607	66607					0.017159645752371944
VRDFPVAL	8	Unmodified	_VRDFPVAL_					0	0	0		ENST00000594572.1_1_1:203045188-203045954:+|nuORF;ENST00000367240.6_1_1:203045582-203045954:+|nuORF	ENST00000594572.1_1_1:203045188-203045954:+|nuORF	ENST00000594572.1_1_1:203045188-203045954:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.27734375	2	458.766178	915.517802	-0.17562	-8.0571E-05	-2.4502	-0.0011241	-2.6258	-0.0012046	458.76521797997356	12.533	0.16946	12.437	12.324	12.493	-0.096607					7	5	2	0	0	0	0.34218	1	162	162		9.3474	0.75416	1	25235			54347	9731	31080	31081	66608	66608					0.05666392622708827
VRDFSMKKSL	10	Unmodified	_VRDFSMKKSL_					0	0	0		ENST00000537927.5_1_12:27807694-27808082:+|nuORF;ENST00000228425.10_2_12:27807694-27809567:+|nuORF	ENST00000537927.5_1_12:27807694-27808082:+|nuORF	ENST00000537927.5_1_12:27807694-27808082:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2226257324219	3	404.225269	1209.65398	-0.47034	-0.00019012	-0.29	-0.00011722	-0.76034	-0.00030735	404.22512680413325	12.815	0.63823	12.716	12.49	13.129	-0.099291					53	21	4	0	0	0	0.23397	1	224	224		19.987	0	1	300690			54348	8851	31081	31082	66609	66609					0.05753719071071828
VRDKPVHS	8	Unmodified	_VRDKPVHS_					0	0	0		ENSG00000172572|ENST00000359062|PDE3A	ENSG00000172572|ENST00000359062|PDE3A	ENSG00000172572|ENST00000359062|PDE3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.74261474609375	2	469.264333	936.514114	0.3928	0.00018433	-2.0551	-0.00096439	-1.6623	-0.00078006	469.26306331006504	26.677	0.28423	26.655	26.556	26.841	-0.022238					14	9	2	0	0	0	0.34294	1	4459	4459		7.2892	0	1	43257			54349	6648	31082	31083	66610	66610					0.0433172284884904
VRDKPVHS	8	Unmodified	_VRDKPVHS_					0	0	0		ENSG00000172572|ENST00000359062|PDE3A	ENSG00000172572|ENST00000359062|PDE3A	ENSG00000172572|ENST00000359062|PDE3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	469.264333	936.514114	0.056057	2.6305E-05	-0.2237	-0.00010498	-0.16764	-7.867E-05	469.264129928746	26.69	0.25196	26.651	26.519	26.771	-0.038671	-0.0021035	0.0010649	NaN	7.2892	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56377			54350	6648	31082	31083							0.0433172284884904
VRDKQSSEF	9	Unmodified	_VRDKQSSEF_					0	0	0			REV__ENST00000263056.5_1_10:30749941-30750031:+|nuORF	REV__ENST00000263056.5_1_10:30749941-30750031:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2609252929688	2	548.275095	1094.53564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.842	1	15.842	15.342	16.342	0								0	0	0	0.26044	1	1148	1148		2.9952	0.49676	1		+		54351	19613	31083	31084	66611	66611					-0.00784936913078127
VRDLKVLACPF	11	Unmodified	_VRDLKVLACPF_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8601684570312	2	630.860283	1259.70601	0.61954	0.00039084	0.67154	0.00042365	1.2911	0.00081449	630.8600905460387	83.905	0.86528	83.905	83.298	84.163	0					84	33	3	0	0	0	0.43149	2	21902	21902;21978		7.1017	2.2047	1	1030800			54352	3405	31084	31085	66612;66613	66612					0.08654882484802329
VRDLKVLACPF	11	Unmodified	_VRDLKVLACPF_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8600463867188	2	630.860283	1259.70601	0.58526	0.00036922	0.068389	4.3144E-05	0.65365	0.00041236	630.8599081191084	84.692	0.63441	84.692	84.405	85.04	0					54	23	3	0	0	0	0.43149	2	22230	22178;22230		7.1017	2.2047	1	436370			54353	3405	31084	31085	66614;66615	66615					0.08654882484802329
VRDLKVLACPF	11	Unmodified	_VRDLKVLACPF_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.8603515625	2	630.860283	1259.70601	0.45741	0.00028856	0.44312	0.00027955	0.90053	0.00056811	630.8601252478331	83.901	1.4313	83.978	83.54	84.971	0.077095					105	57	3	0	0	0	0.43149	1	22132	22132		7.1017	3.5052	1	789680			54354	3405	31084	31085	66616	66616					0.08654882484802329
VRDLKVLACPF	11	Unmodified	_VRDLKVLACPF_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.8599853515625	2	630.860283	1259.70601	0.3725	0.000235	-0.10233	-6.4556E-05	0.27017	0.00017044	630.8598084653833	85.62	2.9451	85.704	84.958	87.903	0.084251					357	124	4	0	0	0	0.44828	2	22470	22470;22521		4.897	1.3005	1	2278600			54355	3405	31084	31085	66617;66618	66617					0.08654882484802329
VRDLKVLACPF	11	Unmodified	_VRDLKVLACPF_					0	0	0		nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.860107421875	2	630.860283	1259.70601	0.57564	0.00036315	0.38717	0.00024425	0.9628	0.00060739	630.8600334909545	84.038	1.6381	84.021	83.375	85.013	-0.016823					182	70	3	0	0	0	0.44828	2	21928	21928;22188		4.897	0	1	869540			54356	3405	31084	31085	66619;66620	66619					0.08654882484802329
VREDRLTL	8	Unmodified	_VREDRLTL_					0	0	0		ENSG00000140983|ENST00000315082|RHOT2;ENST00000569358.5_1_16:720470-721765:+|nuORF;ENST00000562333.5_1_16:720150-721765:+|nuORF;nc|ENSG00000140983|Q8IXI1-2|RHOT2;ENST00000568636.5_1_16:720150-721765:+|nuORF;ENST00000568950.5_1_16:718199-721765:+|nuORF;ENST00000602564.5_1_16:719540-721765:+|nuORF;ENST00000567017.5_1_16:718199-721765:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2;ENST00000567017.5_1_16:718199-721765:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2909240722656	2	501.290548	1000.56654	0.62121	0.00031141	0.066931	3.3552E-05	0.68814	0.00034496	501.2905118874754	78.817	0.64073	78.817	78.462	79.103	0					67	25	3	0	0	0	0.34218	1	20497	20497		9.3474	9.3474	1	735550			54357	4347;11991	31085	31086	66621	66621					0.06628261191792717
VREDRLTL	8	Unmodified	_VREDRLTL_					0	0	0		ENSG00000140983|ENST00000315082|RHOT2;ENST00000569358.5_1_16:720470-721765:+|nuORF;ENST00000562333.5_1_16:720150-721765:+|nuORF;nc|ENSG00000140983|Q8IXI1-2|RHOT2;ENST00000568636.5_1_16:720150-721765:+|nuORF;ENST00000568950.5_1_16:718199-721765:+|nuORF;ENST00000602564.5_1_16:719540-721765:+|nuORF;ENST00000567017.5_1_16:718199-721765:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2;ENST00000567017.5_1_16:718199-721765:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.290771484375	2	501.290548	1000.56654	0.42116	0.00021113	-0.15709	-7.8747E-05	0.26408	0.00013238	501.2904101407893	88.806	0.95444	88.805	88.447	89.401	-0.0013123					94	42	3	0	0	0	0.45431	1	23475	23475		4.3292	0	1	464560			54358	4347;11991	31085	31086	66622	66622					0.06628261191792717
VRETLTTKG	9	Unmodified	_VRETLTTKG_					0	0	0			REV__nc|ENSG00000168827|Q96RP9-2|GFM1	REV__nc|ENSG00000168827|Q96RP9-2|GFM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.27471923828125	2	502.790381	1003.56621	6.015E-05	3.0243E-08	-2.0791	-0.0010453	-2.079	-0.0010453	502.78926789898384	13.094	0.52109	13.094	12.815	13.336	0					27	18	2	0	0	0	0.25843	1	337	337		5.7319	1.4026	1	94155	+		54359	17483	31086	31087	66623	66623					0.06456841471947428
VRFETFQTI	9	Unmodified	_VRFETFQTI_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.F1622Lfs*17|1|0.09|ENSG00000120800|chr12:101346566-101346567|-/TTTAGTATCGTATTCTC|frameshift_variant	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3244018554688	2	570.806031	1139.59751	0.16978	9.6911E-05	0.77955	0.00044497	0.94933	0.00054188	570.8062509479822	59.234	0.29868	59.234	59.081	59.38	0					15	10	2	0	0	0	0.20167	1	14377	14377		22.736	4.5899	1	230730			54360	2965	31087	31088	66624	66624					0.03329414506060857
VRFGGGSK	8	Unmodified	_VRFGGGSK_					0	0	0			REV__ENST00000429422.5_2_3:47893928-47894003:-|nuORF	REV__ENST00000429422.5_2_3:47893928-47894003:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.5650329589844	2	404.22722	806.439886	-0.67389	-0.0002724	1.3676	0.00055281	0.69368	0.0002804	404.2276511318621	34.45	0.62095	34.45	34.104	34.725	0					50	21	3	0	0	0	0.33993	1	6877	6877		1.6526	0	1	676480	+		54361	20932	31088	31089	66625	66625					0.028923797573384036
VRFKHLFWWWF	11	Unmodified	_VRFKHLFWWWF_					0	0	0			REV__ENST00000558615.5_1_15:49867204-49907386:-|nuORF	REV__ENST00000558615.5_1_15:49867204-49907386:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5503845214844	4	413.722579	1650.86121	0.064932	2.6864E-05	-1.5251	-0.00063097	-1.4602	-0.00060411	413.9725847403773	23.05	0.45523	22.962	22.736	23.191	-0.08761					24	15	2	0	0	0	0.33351	1	3359	3359		0.094841	0.021578	1	62262	+		54362	22283	31089	31090	66626	66626					0.061812944014036475
VRFLHRDIY	9	Unmodified	_VRFLHRDIY_					0	0	0		ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.8960876464844	3	406.896252	1217.66693	0.11344	4.6158E-05	-0.35418	-0.00014411	-0.24074	-9.7956E-05	406.89612770584574	36.722	0.94942	36.722	36.447	37.397	0					57	33	2	0	0	0	0.07848	2	7529	7529;7546		42.312	24.87	1	1032500			54363	8081	31090	31091	66627;66628	66627					0.06679918245481531
VRFLHRDIY	9	Unmodified	_VRFLHRDIY_					0	0	0		ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.8962097167969	3	406.896252	1217.66693	0.08335	3.3915E-05	-0.22395	-9.1126E-05	-0.1406	-5.7212E-05	406.8961377485898	36.603	0.75848	36.69	36.435	37.193	0.08741					53	27	2	0	0	0	0.059067	2	7435	7435;7485		49.527	34.279	1	1414500			54364	8081	31090	31091	66629;66630	66629					0.06679918245481531
VRFLHRDIY	9	Unmodified	_VRFLHRDIY_					0	0	0		ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.8961181640625	3	406.896252	1217.66693	0.3832	0.00015592	-0.59606	-0.00024253	-0.21286	-8.661E-05	406.8960008048259	36.669	1.0657	36.762	36.406	37.472	0.093018					63	38	2	0	0	0	0.027957	1	7450	7450		61.09	41.464	1	1085700			54365	8081	31090	31091	66631	66631					0.06679918245481531
VRFNESVRVI	10	Unmodified	_VRFNESVRVI_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-3|VWA8	REV__nc|ENSG00000102763|A3KMH1-3|VWA8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.2433776855469	3	406.903295	1217.68806	0.039521	1.6081E-05	-0.56099	-0.00022827	-0.52147	-0.00021219	406.9030114437852	44.395	0.92562	44.395	44.09	45.015	0					60	33	3	0	0	0	0.31289	1	9876	9876		8.4443	4.568	1	679030	+		54366	14331	31091	31092	66632	66632					0.08791883554317792
VRFQYRVF	8	Unmodified	_VRFQYRVF_					0	0	0			REV__nc|ENSG00000134121|O00533|CHL1	REV__nc|ENSG00000134121|O00533|CHL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2838134765625	2	557.811451	1113.60835	0.42832	0.00023892	2.1569	0.0012032	2.5853	0.0014421	558.3135280649807	88.897	0.35741	88.897	88.672	89.03	0					20	14	2	0	0	0	0.34337	1	23506	23506		5.2307	0	1	87890	+		54367	15655	31092	31093	66633	66633					0.05608861670998522
VRFYWRRRRKV	11	Unmodified	_VRFYWRRRRKV_					0	0	0			REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF	REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.7532043457031	4	406.247018	1620.95897	-0.011589	-4.7079E-06	0.026658	1.083E-05	0.01507	6.122E-06	406.2469969754319	37.75	0.49232	37.841	37.609	38.101	0.090881					29	17	3	0	0	0	0.33351	1	7761	7761		0.094841	0.094841	1	240830	+		54368	19392	31093	31094	66634	66634					0.17332496050062218
VRGANRGL	8	Unmodified	_VRGANRGL_					0	0	0		nc|ENSG00000124205|P14138-3|EDN3	nc|ENSG00000124205|P14138-3|EDN3	nc|ENSG00000124205|P14138-3|EDN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.7514343261719	2	421.751393	841.488233	-0.019077	-8.0458E-06	-0.002027	-8.5487E-07	-0.021104	-8.9006E-06	421.75133706543886	68.225	3.558	68.225	65.927	69.485	0					213	127	3	0	0	0	0.45169	1	16802	16802		5.2307	5.2307	1	517310			54369	12684	31094	31095	66635	66635					0.06114873397245901
VRGANRGL	8	Unmodified	_VRGANRGL_					0	0	0		nc|ENSG00000124205|P14138-3|EDN3	nc|ENSG00000124205|P14138-3|EDN3	nc|ENSG00000124205|P14138-3|EDN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7513122558594	2	421.751393	841.488233	-0.011083	-4.6743E-06	0.062758	2.6468E-05	0.051674	2.1794E-05	421.751316250971	68.105	2.9382	68.088	66.631	69.569	-0.016716					195	104	2	0	0	0	0.45169	1	16982	16982		5.2307	0	1	488640			54370	12684	31094	31095	66636	66636					0.06114873397245901
VRGHLKKKR	9	Unmodified	_VRGHLKKKR_					0	0	0		ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2	ENSG00000196562|ENST00000688720|SULF2	ENSG00000196562|ENST00000688720|SULF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7951049804688	2	561.372541	1120.73053	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.34	1	116.36	115.86	116.86	0.020988								0	0	0	0.26829	1	30190	30190		0	0	1				54371	7880	31095	31096	66637	66637					0.1749932347320282
VRGLHAAQG	9	Unmodified	_VRGLHAAQG_					0	0	0			REV__ENST00000498682.2_3_7:150104681-150105308:+|nuORF	REV__ENST00000498682.2_3_7:150104681-150105308:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.7555236816406	2	454.756675	907.498798	0.22218	0.00010104	-1.8623	-0.00084688	-1.6401	-0.00074584	454.7558315106316	70.599	0.92001	70.574	70.079	70.999	-0.024864					49	32	2	0	0	0	0.31038	1	17993	17993		7.2892	0	1	191350	+		54372	21700	31096	31097	66638	66638					0.041348560516553334
VRGLHAAQG	9	Unmodified	_VRGLHAAQG_					0	0	0			REV__ENST00000498682.2_3_7:150104681-150105308:+|nuORF	REV__ENST00000498682.2_3_7:150104681-150105308:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	454.756675	907.498798	0.19567	8.8981E-05	-1.3678	-0.00062199	-1.1721	-0.00053301	454.7556250505004	70.616	0.66034	70.677	70.327	70.987	0.060783	0.026232	0.00027358	NaN	7.2892	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151060	+		54373	21700	31096	31097							0.041348560516553334
VRGLHAAQG	9	Unmodified	_VRGLHAAQG_					0	0	0			REV__ENST00000498682.2_3_7:150104681-150105308:+|nuORF	REV__ENST00000498682.2_3_7:150104681-150105308:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	454.756675	907.498798	0.22218	0.00010104	-1.8623	-0.00084688	-1.6401	-0.00074584	454.7558315106316	70.599	0.92001	70.574	70.079	70.999	-0.024864	-0.076904	-0.00017619	NaN	7.2892	49	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191350	+		54374	21700	31096	31097							0.041348560516553334
VRGRQAGV	8	Unmodified	_VRGRQAGV_					0	0	0		ENSG00000197561|ENST00000263621|ELANE	ENSG00000197561|ENST00000263621|ELANE	ENSG00000197561|ENST00000263621|ELANE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.7512512207031	2	421.751393	841.488233	0.033817	1.4263E-05	-0.0031136	-1.3132E-06	0.030704	1.2949E-05	421.7512868424377	66.425	0.93214	66.411	65.859	66.791	-0.013588					69	33	3	0	0	0	0.4397	1	16639	16639		9.3474	0	1	493560			54375	7976	31097	31098	66639	66639					0.061148733972345326
VRGSWKKKA	9	Unmodified	_VRGSWKKKA_					0	0	0		ENST00000590113.4_1_19:435948-439002:-|nuORF;ENSG00000129946|ENST00000264554|SHC2	ENST00000590113.4_1_19:435948-439002:-|nuORF	ENST00000590113.4_1_19:435948-439002:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3251953125	2	530.324725	1058.6349	0.30059	0.00015941	0.027108	1.4376E-05	0.32769	0.00017378	530.3245651534517	19.338	0.80726	19.222	19.005	19.812	-0.11592					61	27	3	0	0	0	0.33276	1	2281	2281		3.9444	1.3669	1	144790			54376	3442	31098	31099	66640	66640					0.10792550562314318
VRGSWKKKA	9	Unmodified	_VRGSWKKKA_					0	0	0		ENST00000590113.4_1_19:435948-439002:-|nuORF;ENSG00000129946|ENST00000264554|SHC2	ENST00000590113.4_1_19:435948-439002:-|nuORF	ENST00000590113.4_1_19:435948-439002:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	530.324725	1058.6349	0.30059	0.00015941	0.027108	1.4376E-05	0.32769	0.00017378	530.3245651534517	19.338	0.80726	19.222	19.005	19.812	-0.11592	-0.00092731	5.0368E-05	NaN	3.9444	61	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144790			54377	3442	31098	31099							0.10792550562314318
VRHARFAK	8	Unmodified	_VRHARFAK_					0	0	0			REV__ENSG00000164898|ENST00000297534|FMC1	REV__ENSG00000164898|ENST00000297534|FMC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.24700927734375	2	492.796135	983.577717	0.29026	0.00014304	-2.1247	-0.001047	-1.8344	-0.000904	492.7953240696516	23.623	1.1564	23.55	23.231	24.387	-0.072559					60	39	2	0	0	0	0.34337	1	3743	3743		5.2307	1.2863	1	61426	+		54378	17185	31099	31100	66641	66641					0.08527128076605095
VRHERFCTSH	10	Unmodified	_VRHERFCTSH_					0	0	0			REV__SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|53|3|anti-sense	REV__SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|53|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.2292785644531	3	424.540251	1270.59892	-0.3061	-0.00012995	1.8233	0.00077404	1.5172	0.00064409	424.5409347107656	16.184	0.63855	16.07	15.838	16.476	-0.11434					38	21	2	0	0	0	0.32167	1	1186	1186		0.13989	0	1	45317	+		54379	23317	31100	31101	66642	66642					-0.025552746768426005
VRHQEKVIEK	10	Unmodified	_VRHQEKVIEK_					0	0	0		nc|ENSG00000140481|Q8N5R6-4|CCDC33;nc|ENSG00000140481|Q8N5R6-5|CCDC33;ENSG00000140481|ENST00000398814|CCDC33;nc|ENSG00000140481|Q8N5R6|CCDC33;nc|ENSG00000140481|Q8N5R6-2|CCDC33	nc|ENSG00000140481|Q8N5R6-4|CCDC33	nc|ENSG00000140481|Q8N5R6-4|CCDC33	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3678588867188	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.94	1	114.94	114.44	115.44	0								0	0	0	0.38189	1	29804	29804		1.1933	0.12188	1				54380	4309	31101	31102	66643	66643					0.1033955510006308
VRHQEKVIEK	10	Unmodified	_VRHQEKVIEK_					0	0	0		nc|ENSG00000140481|Q8N5R6-4|CCDC33;nc|ENSG00000140481|Q8N5R6-5|CCDC33;ENSG00000140481|ENST00000398814|CCDC33;nc|ENSG00000140481|Q8N5R6|CCDC33;nc|ENSG00000140481|Q8N5R6-2|CCDC33	nc|ENSG00000140481|Q8N5R6-4|CCDC33	nc|ENSG00000140481|Q8N5R6-4|CCDC33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.36962890625	2	633.369861	1264.72517	0.16435	0.00010409	-0.957	-0.00060614	-0.79265	-0.00050204	633.3686989485224	106.23	0.36261	106.23	105.9	106.26	-0.0027847					74	53	2	0	0	0	0.41085	1	28063	28063		1.4819	0	1	155840			54381	4309	31101	31102	66644	66644					0.1033955510006308
VRHQEKVIEK	10	Unmodified	_VRHQEKVIEK_					0	0	0		nc|ENSG00000140481|Q8N5R6-4|CCDC33;nc|ENSG00000140481|Q8N5R6-5|CCDC33;ENSG00000140481|ENST00000398814|CCDC33;nc|ENSG00000140481|Q8N5R6|CCDC33;nc|ENSG00000140481|Q8N5R6-2|CCDC33	nc|ENSG00000140481|Q8N5R6-4|CCDC33	nc|ENSG00000140481|Q8N5R6-4|CCDC33	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	633.369861	1264.72517	0.41619	0.0002636	-1.5567	-0.00098597	-1.1405	-0.00072236	633.3683168307022	106.2	0.078934	106.2	106.16	106.24	0.0031738	-0.012898	-0.00059335	NaN	1.4819	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92998			54382	4309	31101	31102							0.1033955510006308
VRHQLQGP	8	Unmodified	_VRHQLQGP_					0	0	0			REV__nc|ENSG00000139737|Q8ND83-3|SLAIN1	REV__nc|ENSG00000139737|Q8ND83-3|SLAIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.9080505371094	2	467.764501	933.514448	-0.19375	-9.0628E-05	0.37318	0.00017456	0.17943	8.3931E-05	467.76434626774966	19.178	0.34075	19.178	19.034	19.375	0					16	11	2	0	0	0	0.34247	1	2175	2175		8.5933	0	1	23946	+		54383	16006	31102	31103	66645	66645					0.04503142568705698
VRHTAAQL	8	Unmodified	_VRHTAAQL_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.7942810058594	2	448.259051	894.503549	0.27888	0.00012501	0.54583	0.00024467	0.82471	0.00036968	448.259550849322	77.141	0.48349	77.196	76.922	77.405	0.05542					28	16	2	0	0	0	0.34319	1	19902	19902		2.5775	0	1	165720	+		54384	13719	31103	31104	66646	66646					0.05207740194430244
VRIKCDKWKKK	11	Unmodified	_VRIKCDKWKKK_					0	0	0			REV__nc|ENSG00000064651|P55011-3|SLC12A2	REV__nc|ENSG00000064651|P55011-3|SLC12A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.9589538574219	3	477.958746	1430.85441	0.2872	0.00013727	0.11869	5.6728E-05	0.40589	0.000194	477.9587866012619	90.5	1.0181	90.59	89.847	90.865	0.090675					160	79	5	0	0	0	0.46554	1	24011	24011		2.6312	1.3016	1	1572300	+		54385	13646	31104	31105	66647	66647					0.15621613458483807
VRIKKGLLAPL	11	Unmodified	_VRIKKGLLAPL_					0	0	0		ENST00000487195.5_1_13:46917522-46924493:-|nuORF;ENST00000441284.5_2_13:46917522-46942212:-|nuORF;nc|ENSG00000102445|Q9H714-6|RUBCNL;nc|ENSG00000102445|Q9H714-3|RUBCNL;ENSG00000102445|ENST00000429979|RUBCNL	ENST00000487195.5_1_13:46917522-46924493:-|nuORF	ENST00000487195.5_1_13:46917522-46924493:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.7685546875	2	604.416083	1206.81761	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.26	1	119.26	118.76	119.76	0								0	0	0	0.3823	1	30778	30778		0	0	1				54386	1766	31105	31106	66648	66648					0.22247684904277776
VRINSRVS	8	Unmodified	_VRINSRVS_					0	0	0			REV__nc|ENSG00000131620|Q5XXA6-2|ANO1	REV__nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.77752685546875	2	465.777608	929.540663	0.14808	6.8973E-05	-0.19059	-8.8772E-05	-0.042506	-1.9798E-05	465.7773889648621	69.509	2.264	69.487	68.595	70.859	-0.022079					157	81	3	0	0	0	0.4354	1	17942	17942		10.824	2.9138	1	439530	+		54387	15525	31106	31107	66649	66649					0.07307411740180214
VRIYRMLSL	9	Unmodified	_VRIYRMLSL_					0	0	0			REV__ENST00000370238.7_1_1:94354044-94354092:-|nuORF	REV__ENST00000370238.7_1_1:94354044-94354092:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8425903320312	2	575.841894	1149.66923	0.21142	0.00012175	1.1115	0.00064003	1.3229	0.00076178	575.8423428114145	80.387	2.5277	80.387	78.95	81.478	0					278	106	3	0	0	0	0.29176	1	21103	21103		10.074	0.6908	1	5564600	+		54388	20372	31107	31108	66650	66650					0.10038630658937109
VRKAAPVTL	9	Unmodified	_VRKAAPVTL_					0	0	0		nc|ENSG00000011478|Q9NXS2-3|QPCTL	nc|ENSG00000011478|Q9NXS2-3|QPCTL	nc|ENSG00000011478|Q9NXS2-3|QPCTL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2635498046875	2	477.808377	953.6022	-0.028088	-1.3421E-05	0.37257	0.00017802	0.34448	0.0001646	477.8085061422833	31.289	0.63794	31.289	30.889	31.526	0					29	22	2	0	0	0	0.2451	1	5803	5803		15.847	0	1	120690			54389	12562	31108	31109	66651	66651					0.12354343439471904
VRKAHKDIS	9	Unmodified	_VRKAHKDIS_					0	0	0		ENST00000492592.1_1_1:156907219-156909508:-|nuORF	ENST00000492592.1_1_1:156907219-156909508:-|nuORF	ENST00000492592.1_1_1:156907219-156909508:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7682495117188	2	527.311815	1052.60908	0.37549	0.000198	-0.33827	-0.00017837	0.037213	1.9623E-05	527.3115402175468	26.319	0.51605	26.319	26.042	26.558	0					27	17	2	0	0	0	0.25622	1	4353	4353		7.2892	0	1	128540			54390	11192	31109	31110	66652	66652					0.08487656320039605
VRKFMKTSLT	10	Unmodified	_VRKFMKTSLT_					0	0	0		ENST00000588870.1_1_17:40812290-40812693:+|nuORF	ENST00000588870.1_1_17:40812290-40812693:+|nuORF	ENST00000588870.1_1_17:40812290-40812693:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.5692138671875	3	404.237398	1209.69036	-0.34839	-0.00014083	-3.6053	-0.0014574	-3.9537	-0.0015982	404.23630146288576	18.397	1.0749	18.279	17.631	18.706	-0.11739					52	36	3	0	0	0	0.31926	1	1894	1894		3.0723	1.1659	1	44853			54391	12151	31110	31111	66653	66653					0.09390595967784066
VRKKLEQH	8	Unmodified	_VRKKLEQH_					0	0	0		ENSG00000214929|ENST00000344803|SPATA31D1;ENSG00000189357|ENST00000419782|SPATA31D4;ENSG00000186788|ENST00000445385|SPATA31D3	ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.338134765625	2	519.314358	1036.61416	0.35834	0.00018609	-0.11103	-5.766E-05	0.24731	0.00012843	519.314195910304	25.003	0.76923	25.003	24.706	25.475	0					51	26	3	0	0	0	0.34414	1	4036	4036		2.0598	0.21551	1	209360			54392	8393	31111	31112	66654	66654					0.09731960182671173
VRKKQISY	8	Unmodified	_VRKKQISY_					0	0	0			REV__ENST00000481458.1_1_21:37771819-37785123:+|nuORF	REV__ENST00000481458.1_1_21:37771819-37785123:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.788818359375	2	511.311284	1020.60801	0.37306	0.00019075	4.4544	0.0022776	4.8275	0.0024684	511.81279398522014	53.983	0.10889	53.967	53.893	54.002	-0.015923					5	3	2	0	0	0	0.32886	1	12761	12761		21.747	0	1	121550	+		54393	16844	31112	31113	66655	66655					0.09853441951133846
VRKLREVMHK	10	Unmodified	_VRKLREVMHK_					0	0	0		ENSG00000173714|ENST00000311378|WFIKKN2	ENSG00000173714|ENST00000311378|WFIKKN2	ENSG00000173714|ENST00000311378|WFIKKN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5959777832031	3	432.595808	1294.76559	-0.034947	-1.5118E-05	0.4806	0.0002079	0.44565	0.00019279	432.5959088815049	43.828	1.6229	43.912	43.166	44.789	0.083996					175	59	4	0	0	0	0.411	1	9731	9731		1.4551	0.44154	1	1376200			54394	6745	31113	31114	66656	66656					0.13000198218855985
VRKLVAKKLKL	11	Unmodified	_VRKLVAKKLKL_					0	0	0			REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF	REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	648.8609619140625	2	648.466107	1294.91766	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.55	1	111.54	111.04	112.04	-0.013939								0	0	0	0.38203	1	29019	29019		0.30703	0	1		+		54395	21480	31114	31115	66657	66657					0.28199922238081854
VRKMRESRPL	10	Unmodified	_VRKMRESRPL_					0	0	0		nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH	nc|ENSG00000080031|Q9HD43-3|PTPRH	nc|ENSG00000080031|Q9HD43-3|PTPRH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.3711547851562	2	636.371881	1270.72921	-0.073532	-4.6793E-05	-2.1811	-0.001388	-2.2546	-0.0014348	636.3709326275925	106.74	0.077797	106.74	106.69	106.77	0					18	11	2	0	0	0	0.37454	1	28191	28191		8.1555	2.4237	1	1171200			54396	1148	31115	31116	66658	66658					0.10467321322153111
VRKNVTLN	8	Unmodified	_VRKNVTLN_					0	0	0		nc|ENSG00000067064|Q13907|IDI1;ENSG00000148377|ENST00000277517|IDI2;ENSG00000067064|ENST00000381344|IDI1	nc|ENSG00000067064|Q13907|IDI1	nc|ENSG00000067064|Q13907|IDI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2752990722656	2	472.287808	942.561064	0.44252	0.000209	-0.9204	-0.00043469	-0.47788	-0.0002257	472.2871160681627	84.969	2.3886	84.956	84.516	86.904	-0.012833					207	93	4	0	0	0	0.45169	1	22805	22805		5.2307	0	1	10825000			54397	854	31116	31117	66659	66659					0.0874858239999412
VRKREQQSRHL	11	Unmodified	_VRKREQQSRHL_					0	0	0			REV__ENSG00000124302|ENST00000650847|CHST8	REV__ENSG00000124302|ENST00000650847|CHST8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.74755859375	3	479.611285	1435.81203	0.42526	0.00020396	0.052793	2.532E-05	0.47805	0.00022928	479.6108986172334	92.213	1.9736	92.214	91.275	93.248	0.00046539					257	144	3	0	0	0	0.33351	1	24268	24268		0.094841	0	1	626220	+		54398	15228	31117	31118	66660	66660					0.11155354374500348
VRKREQQSRHL	11	Unmodified	_VRKREQQSRHL_					0	0	0			REV__ENSG00000124302|ENST00000650847|CHST8	REV__ENSG00000124302|ENST00000650847|CHST8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	479.611285	1435.81203	0.14073	6.7497E-05	0.19617	9.4086E-05	0.3369	0.00016158	479.61097140759955	92.102	0.89147	92.102	91.429	92.32	0	-0.031388	0.00016316	NaN	0.094841	84	62	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206670	+		54399	15228	31117	31118							0.11155354374500348
VRKREQQSRHL	11	Unmodified	_VRKREQQSRHL_					0	0	0			REV__ENSG00000124302|ENST00000650847|CHST8	REV__ENSG00000124302|ENST00000650847|CHST8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	479.611285	1435.81203	0.24612	0.00011804	0.094417	4.5284E-05	0.34054	0.00016333	479.61096421072955	91.994	0.77789	92.085	91.454	92.232	0.090675	-0.048911	1.6754E-05	NaN	0.094841	89	52	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	511490	+		54400	15228	31117	31118							0.11155354374500348
VRKVSDSSIL	10	Unmodified	_VRKVSDSSIL_					0	0	0		nc|ENSG00000164049|Q6X9E4-2|FBXW12;nc|ENSG00000164049|Q6X9E4-3|FBXW12;ENSG00000164049|ENST00000296438|FBXW12	nc|ENSG00000164049|Q6X9E4-2|FBXW12	nc|ENSG00000164049|Q6X9E4-2|FBXW12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7667846679688	2	552.324588	1102.63462	0.55501	0.00030655	0.99761	0.000551	1.5526	0.00085755	552.3251714156191	86.11	0.98337	86.11	85.484	86.467	0					58	37	2	0	0	0	0.31745	1	22639	22639		8.7454	8.7454	1	139710			54401	5773	31118	31119	66661	66661					0.08741086051804814
VRKVSDSSIL	10	Unmodified	_VRKVSDSSIL_					0	0	0		nc|ENSG00000164049|Q6X9E4-2|FBXW12;nc|ENSG00000164049|Q6X9E4-3|FBXW12;ENSG00000164049|ENST00000296438|FBXW12	nc|ENSG00000164049|Q6X9E4-2|FBXW12	nc|ENSG00000164049|Q6X9E4-2|FBXW12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7660522460938	2	552.324588	1102.63462	0.52384	0.00028933	0.71139	0.00039292	1.2352	0.00068225	552.3250333576508	85.917	0.88077	86.002	85.514	86.395	0.084251					49	32	2	0	0	0	0.31745	1	22573	22573		8.7454	8.7454	1	154870			54402	5773	31118	31119	66662	66662					0.08741086051804814
VRKVSDSSIL	10	Unmodified	_VRKVSDSSIL_					0	0	0		nc|ENSG00000164049|Q6X9E4-2|FBXW12;nc|ENSG00000164049|Q6X9E4-3|FBXW12;ENSG00000164049|ENST00000296438|FBXW12	nc|ENSG00000164049|Q6X9E4-2|FBXW12	nc|ENSG00000164049|Q6X9E4-2|FBXW12	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	552.324588	1102.63462	0.53731	0.00029677	0.9175	0.00050676	1.4548	0.00080353	552.325218127715	85.803	0.89825	85.794	85.512	86.41	-0.0090103	-0.17458	1.3611E-05	NaN	8.7454	51	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158490			54403	5773	31118	31119							0.08741086051804814
VRLHRLGAF	9	Unmodified	_VRLHRLGAF_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2	REV__nc|ENSG00000145147|O94813-3|SLIT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.280029296875	2	534.824892	1067.63523	0.55515	0.00029691	-1.2377	-0.00066196	-0.68257	-0.00036506	534.8242071365349	53.618	0.46233	53.609	53.377	53.839	-0.0096092					28	17	2	0	0	0	0.23147	1	12698	12698		19.439	4.4818	1	392360	+		54404	16279	31119	31120	66663	66663					0.10411970282166294
VRLKKVPAKKL	11	Unmodified	_VRLKKVPAKKL_					0	0	0		ENST00000409410.6_3_19:38826782-38827079:+|nuORF	ENST00000409410.6_3_19:38826782-38827079:+|nuORF	ENST00000409410.6_3_19:38826782-38827079:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.30291748046875	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.382	1	60.477	59.977	60.977	0.095093								0	0	0	0.38222	1	14758	14758		0.094841	0	1				54405	10247	31120	31121	66664	66664					0.2580734920395571
VRLKKVPAKKL	11	Unmodified	_VRLKKVPAKKL_					0	0	0		ENST00000409410.6_3_19:38826782-38827079:+|nuORF	ENST00000409410.6_3_19:38826782-38827079:+|nuORF	ENST00000409410.6_3_19:38826782-38827079:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.3025817871094	3	427.30273	1278.88636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.545	1	60.642	60.142	61.142	0.096985								0	0	0	0.38186	1	14809	14809		0.50596	0.41111	1				54406	10247	31120	31121	66665	66665					0.2580734920395571
VRLKTMKVML	10	Unmodified	_VRLKTMKVML_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.5837097167969	3	406.919012	1217.73521	-0.4792	-0.000195	-1.4811	-0.00060269	-1.9603	-0.00079768	406.91837147551803	103.75	0.13936	103.75	103.71	103.85	0					25	19	2	0	0	0	0.32165	1	27558	27558		0.69767	0.07084	1	1432800	+		54407	17248	31121	31122	66666	66666					0.13504703509465799
VRLMAKDAG	9	Unmodified	_VRLMAKDAG_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7684020996094	2	480.768394	959.522236	-0.052305	-2.5147E-05	0.39989	0.00019226	0.34759	0.00016711	480.7684818448726	14.697	0.60846	14.631	14.373	14.982	-0.066068					46	21	3	0	0	0	0.24471	1	820	820		17.113	3.605	1	471540			54408	1234	31122	31123	66667	66667					0.04085533773957195
VRLQKKQAER	10	Unmodified	_VRLQKKQAER_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47	ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	628.3829345703125	2	628.383303	1254.75205	0.2283	0.00014346	-0.59765	-0.00037555	-0.36935	-0.00023209	628.3829522479353	85.763	2.8517	85.847	85.001	87.853	0.084251					238	119	2	0	0	0	0.37454	3	22368	22368;22415;22463		8.1555	0.54658	1	19254000			54409	5932;12812	31123	31124	66668;66669;66670	66668					0.13486663711250912
VRLRLPLKL	9	Unmodified	_VRLRLPLKL_					0	0	0			REV__nc|ENSG00000136100|Q86VN1-2|VPS36	REV__nc|ENSG00000136100|Q86VN1-2|VPS36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.8162231445312	2	554.389868	1106.76518	0.27129	0.0001504	-0.60992	-0.00033813	-0.33862	-0.00018773	554.389493821178	38.208	0.39657	38.208	37.98	38.377	0					18	13	2	0	0	0	0.25938	1	7914	7914		4.3292	0	1	112260	+		54410	15789	31124	31125	66671	66671					0.21607146561291302
VRLWALAEV	9	Unmodified	_VRLWALAEV_					0	0	0		ENST00000314686.9_1_3:40518691-40519449:+|nuORF	ENST00000314686.9_1_3:40518691-40519449:+|nuORF	ENST00000314686.9_1_3:40518691-40519449:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8141479492188	2	528.813659	1055.61277	0.19005	0.0001005	-0.50549	-0.00026731	-0.31544	-0.00016681	528.8136314717093	97.418	0.52366	97.418	97.193	97.717	0					82	52	2	0	0	0	0.26168	1	26113	26113		1.8442	1.1539	1	97371			54411	9345	31125	31126	66672	66672					0.0871832609386729
VRMKLKFW	8	Unmodified	_VRMKLKFW_					0	0	0		ENST00000566261.5_1_16:19179374-19184899:+|nuORF;ENST00000562034.5_2_16:19184626-19184899:+|nuORF	ENST00000566261.5_1_16:19179374-19184899:+|nuORF	ENST00000566261.5_1_16:19179374-19184899:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3179931640625	2	554.328422	1106.64229	-0.035738	-1.9811E-05	0.21721	0.0001204	0.18147	0.00010059	554.3285322824889	14.753	0.1915	14.687	14.537	14.728	-0.066068					9	6	2	0	0	0	0.34437	1	824	824		0.69038	0.69038	1	31311			54412	11918	31126	31127	66673	66673					0.09323566838384068
VRNKLLIEYQ	10	Unmodified	_VRNKLLIEYQ_					0	0	0			REV__nc|ENSG00000065534|Q15746-4|MYLK	REV__nc|ENSG00000065534|Q15746-4|MYLK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	638.3735961914062	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.325	1	97.396	96.896	97.896	0.070465								0	0	0	0.38166	1	26040	26040		1.4819	0.15237	1		+		54413	13667	31127	31128	66674	66674					0.10829323385610223
VRNNVIIVM	9	Oxidation (M)	_VRNNVIIVM(Oxidation (M))_		VRNNVIIVM(1)		VRNNVIIVM(71)	0	0	1		ENSG00000151503|ENST00000534548|NCAPD3;ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.3109741210938	2	537.310426	1072.6063	0.62724	0.00033702	0.44729	0.00024033	1.0745	0.00057735	537.3104568403215	37.839	1.089	37.839	37.56	38.649	0					56	38	2	0	0	0	0.015674	2	7867	7818;7867		70.716	22.937	1	1524500			54414	4967	31128	31129	66675;66676	66676		613			0.07290064870880997
VRNNVIIVM	9	Oxidation (M)	_VRNNVIIVM(Oxidation (M))_		VRNNVIIVM(1)		VRNNVIIVM(57)	0	0	1		ENSG00000151503|ENST00000534548|NCAPD3;ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.310791015625	2	537.310426	1072.6063	0.44723	0.0002403	0.74966	0.0004028	1.1969	0.0006431	537.310564653232	37.823	0.87355	37.914	37.581	38.455	0.090881					64	31	4	0	0	0	0.037693	1	7833	7833		57.471	6.6163	1	1434600			54415	4967	31128	31129	66677	66677		613			0.07290064870880997
VRNNVIIVM	9	Oxidation (M)	_VRNNVIIVM(Oxidation (M))_		VRNNVIIVM(1)		VRNNVIIVM(67)	0	0	1		ENSG00000151503|ENST00000534548|NCAPD3;ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENSG00000151503|ENST00000534548|NCAPD3	ENSG00000151503|ENST00000534548|NCAPD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.3106689453125	2	537.310426	1072.6063	0.46757	0.00025123	0.59227	0.00031824	1.0598	0.00056946	537.3105914674621	37.743	1.0155	37.84	37.552	38.568	0.097527					60	36	2	0	0	0	0.017871	1	7811	7811		67.344	13.768	1	1409000			54416	4967	31128	31129	66678	66678		613			0.07290064870880997
VRNPSVVVK	9	Unmodified	_VRNPSVVVK_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8033752441406	2	499.311284	996.608014	0.14381	7.1808E-05	-0.2723	-0.00013596	-0.12848	-6.4152E-05	499.310897576652	15.651	0.26486	15.651	15.498	15.763	0					13	8	2	0	0	0	0.34923	1	1076	1076		1.4819	0	1	18316			54417	5669	31129	31130	66679	66679					0.1095744195114321
VRNPSVVVK	9	Unmodified	_VRNPSVVVK_					0	0	0		nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;COL6A3|p.L2541Cfs*84|1|0.26|ENSG00000163359|chr2:237344398-237344398|G/-|frameshift_variant;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	nc|ENSG00000163359|P12111-2|COL6A3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	499.311284	996.608014	0.12845	6.4135E-05	-0.2159	-0.0001078	-0.087454	-4.3667E-05	499.31110289901034	15.707	0.23759	15.643	15.517	15.754	-0.064414	-0.0042781	3.5147E-05	NaN	1.4819	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24226			54418	5669	31129	31130							0.1095744195114321
VRNSYYIGADG	11	Unmodified	_VRNSYYIGADG_					0	0	0		ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.5314025878906	3	405.531527	1213.57275	0.14521	5.8887E-05	-0.036965	-1.4991E-05	0.10825	4.3897E-05	405.5315919285728	44.596	0.90869	44.596	44.33	45.238	0					85	32	4	0	0	0	0.33189	2	9890	9890;9941		15.538	3.1871	1	1543900			54419	4852	31130	31131	66680;66681	66680					-0.025492653673381938
VRNSYYIGADG	11	Unmodified	_VRNSYYIGADG_					0	0	0		ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.5313720703125	3	405.531527	1213.57275	0.047864	1.941E-05	-0.30969	-0.00012559	-0.26183	-0.00010618	405.5314946679581	44.277	0.80158	44.345	44.093	44.894	0.068569					77	29	4	0	0	0	0.33189	1	9794	9794		11.631	3.686	1	1611300			54420	4852	31130	31131	66682	66682					-0.025492653673381938
VRNSYYIGADG	11	Unmodified	_VRNSYYIGADG_					0	0	0		ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.53143310546875	3	405.531527	1213.57275	-0.052342	-2.1226E-05	-0.095398	-3.8687E-05	-0.14774	-5.9913E-05	405.5315461881228	44.236	0.82364	44.311	44.011	44.835	0.075047					83	29	4	0	0	0	0.33189	1	9775	9775		11.631	0	1	1899000			54421	4852	31130	31131	66683	66683					-0.025492653673381938
VRNVGKPLL	9	Unmodified	_VRNVGKPLL_					0	0	0		ENST00000430298.6_1_19:12222513-12222840:+|nuORF	ENST00000430298.6_1_19:12222513-12222840:+|nuORF	ENST00000430298.6_1_19:12222513-12222840:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7720031738281	2	498.321651	994.62875	0.40685	0.00020274	-0.47749	-0.00023794	-0.070641	-3.5202E-05	498.32138216081506	52.006	0.38501	52.057	51.817	52.202	0.050575					21	13	2	0	0	0	0.25417	1	12212	12212		8.5933	2.2392	1	135390			54422	10462	31131	31132	66684	66684					0.13122032330807087
VRPAFFRLC	9	Unmodified	_VRPAFFRLC_					0	0	0		ENST00000561871.1_2_15:42565606-42565849:+|nuORF	ENST00000561871.1_2_15:42565606-42565849:+|nuORF	ENST00000561871.1_2_15:42565606-42565849:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.8069458007812	2	554.807854	1107.60115	0.72291	0.00040108	-2.4048	-0.0013342	-1.6819	-0.00093315	554.8062823069432	37.529	0.38753	37.529	37.259	37.646	0					29	13	3	0	0	0	0.30623	1	7737	7737		7.9102	1.187	1	499650			54423	11915	31132	31133	66685	66685					0.05165805798924339
VRPAPLPASL	10	Unmodified	_VRPAPLPASL_					0	0	0		ENST00000263253.8_1_22:41488148-41488439:+|nuORF	ENST00000263253.8_1_22:41488148-41488439:+|nuORF	ENST00000263253.8_1_22:41488148-41488439:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.22674560546875	2	510.813659	1019.61277	0.20249	0.00010343	-0.45962	-0.00023478	-0.25713	-0.00013134	510.81382006923025	18.228	0.30768	18.228	17.991	18.299	0					15	10	2	0	0	0	0.31267	1	1828	1828		14.838	6.9281	1	35860			54424	9000	31133	31134	66686	66686					0.10374326093892705
VRPAPLPASL	10	Unmodified	_VRPAPLPASL_					0	0	0		ENST00000263253.8_1_22:41488148-41488439:+|nuORF	ENST00000263253.8_1_22:41488148-41488439:+|nuORF	ENST00000263253.8_1_22:41488148-41488439:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.226806640625	2	510.813659	1019.61277	0.079359	4.0538E-05	0.1082	5.5269E-05	0.18756	9.5807E-05	510.8140448625465	18.286	0.3723	18.169	17.985	18.358	-0.11739					18	12	2	0	0	0	0.31267	1	1878	1878		14.838	4.7643	1	28720			54425	9000	31133	31134	66687	66687					0.10374326093892705
VRPARFVVR	9	Unmodified	_VRPARFVVR_					0	0	0		ENST00000574916.1_1_17:685618-686569:+|nuORF;ENSG00000171861|ENST00000304478|MRM3	ENST00000574916.1_1_17:685618-686569:+|nuORF	ENST00000574916.1_1_17:685618-686569:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.3353271484375	2	550.345992	1098.67743	-0.021527	-1.1847E-05	-1.2369	-0.00068072	-1.2584	-0.00069256	550.3451907057162	12.28	0.26202	12.212	12.051	12.313	-0.06806					22	10	3	0	0	0	0.35563	1	68	68		0.52476	0	1	44858			54426	6587	31134	31135	66688	66688					0.1320394569054315
VRPDRDRP	8	Unmodified	_VRPDRDRP_					0	0	0			REV__ENST00000367311.4_1_1:201435078-201437729:-|nuORF	REV__ENST00000367311.4_1_1:201435078-201437729:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7782897949219	2	505.778139	1009.54173	0.32436	0.00016406	0.10059	5.0878E-05	0.42496	0.00021493	505.77815739515046	21.899	0.91905	21.799	21.471	22.39	-0.10034					75	33	4	0	0	0	0.45431	1	3035	3035		4.3292	0.73274	1	457990	+		54427	20309	31135	31136	66689	66689					0.03733626109078614
VRPDWVPLNL	10	Unmodified	_VRPDWVPLNL_					0	0	0			REV__ENSG00000090060|ENST00000216277|PAPOLA	REV__ENSG00000090060|ENST00000216277|PAPOLA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.21588134765625	3	403.564391	1207.67134	-0.2858	-0.00011534	0.57065	0.00023029	0.28485	0.00011495	403.5646889913889	28.995	0.87725	29.008	28.423	29.3	0.013474					67	31	3	0	0	0	0.3179	1	5198	5198		5.7834	0	1	236790	+		54428	14037	31136	31137	66690	66690					0.07581382668377046
VRPGRGRGRR	10	Unmodified	_VRPGRGRGRR_					0	0	0		ENST00000493518.5_1_10:120514304-120514760:-|nuORF	ENST00000493518.5_1_10:120514304-120514760:-|nuORF	ENST00000493518.5_1_10:120514304-120514760:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.2830200195312	2	583.858121	1165.70169	0.40955	0.00023912	0.037073	2.1646E-05	0.44662	0.00026077	583.8589009915867	88.486	2.2643	88.483	87.246	89.51	-0.0028381					270	111	4	0	0	0	0.32033	1	23487	23487		3.5965	0.31518	1	1198200			54429	11202	31137	31138	66691	66691					0.1254659889677896
VRPHYKLLEL	10	Unmodified	_VRPHYKLLEL_					0	0	0			REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF	REV__ENST00000469550.6_1_5:141001037-141014565:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3792114257812	2	634.379697	1266.74484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.18	1	108.17	107.67	108.67	-0.0085754								0	0	0	0.37664	1	28450	28450		3.5965	1.9439	1		+		54430	21342	31138	31139	66692	66692					0.12213931110841258
VRPLQQLGQR	10	Unmodified	_VRPLQQLGQR_					0	0	0		ENSG00000167434|ENST00000300900|CA4	ENSG00000167434|ENST00000300900|CA4	ENSG00000167434|ENST00000300900|CA4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.85693359375	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.357	1	89.447	88.947	89.947	0.090569								0	0	0	0.37739	1	23636	23636		3.2813	1.4371	1				54431	6175	31139	31140	66693	66693					0.11018705648439209
VRPLVRCLPA	10	Unmodified	_VRPLVRCLPA_					0	0	0			REV__ENST00000495879.1_1_3:61547945-61734588:+|nuORF	REV__ENST00000495879.1_1_3:61547945-61734588:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.342529296875	2	562.342061	1122.66957	0.55229	0.00031058	1.2686	0.00071341	1.8209	0.001024	562.3426637628147	83.384	1.2369	83.384	82.9	84.137	0					125	48	4	0	0	0	0.38233	1	21814	21814		6.7232	0	1	1994200	+		54432	21663	31140	31141	66694	66694					0.11314050378769025
VRPLVRCLPA	10	Unmodified	_VRPLVRCLPA_					0	0	0			REV__ENST00000495879.1_1_3:61547945-61734588:+|nuORF	REV__ENST00000495879.1_1_3:61547945-61734588:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	562.342061	1122.66957	0.46276	0.00026023	1.4583	0.00082004	1.921	0.0010803	562.3428265293312	83.371	2.025	83.353	83.081	85.106	-0.017662	-0.0082149	7.5772E-05	NaN	6.7232	170	86	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1614700	+		54433	21663	31140	31141							0.11314050378769025
VRPPLIIF	8	Unmodified	_VRPPLIIF_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.8105163574219	2	477.810388	953.606223	0.14428	6.8936E-05	0.32986	0.00015761	0.47414	0.00022655	477.8104958365134	69.044	1.251	69.044	68.592	69.843	0					133	44	4	0	0	0	0.2157	6	17405	17356;17405;17449;17500;17553;17606		40.449	14.107	1	5529300			54434	4018	31141	31142	66695;66696;66697;66698;66699;66700	66696					0.12756432933178985
VRPPLIIF	8	Unmodified	_VRPPLIIF_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.810302734375	2	477.810388	953.606223	0.32948	0.00015743	0.19763	9.4428E-05	0.52711	0.00025186	477.81042647963386	68.999	1.3773	69.071	68.484	69.862	0.071938					138	49	4	0	0	0	0.2157	5	17333	17333;17386;17434;17483;17541		40.449	14.107	1	5722000			54435	4018	31141	31142	66701;66702;66703;66704;66705	66701					0.12756432933178985
VRPPLIIF	8	Unmodified	_VRPPLIIF_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.8104248046875	2	477.810388	953.606223	0.22288	0.00010649	0.2944	0.00014067	0.51728	0.00024716	477.81046781910834	69.11	1.3442	69.091	68.516	69.861	-0.019157					147	48	5	0	0	0	0.2157	6	17398	17354;17398;17442;17486;17540;17656		40.449	8.3316	1	5701000			54436	4018	31141	31142	66706;66707;66708;66709;66710;66711	66707					0.12756432933178985
VRPPRRIE	8	Unmodified	_VRPPRRIE_					0	0	0		ENST00000366838.1_1_1:225976737-225976952:+|nuORF	ENST00000366838.1_1_1:225976737-225976952:+|nuORF	ENST00000366838.1_1_1:225976737-225976952:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2926330566406	2	511.814525	1021.6145	0.33865	0.00017333	-0.94848	-0.00048544	-0.60982	-0.00031212	511.81402104249855	21.242	0.62707	21.189	20.861	21.488	-0.052912					41	21	3	0	0	0	0.34408	1	2727	2727		2.3027	0	1	117580			54437	9714	31142	31143	66712	66712					0.10455379902509776
VRPPVQVY	8	Unmodified	_VRPPVQVY_					0	0	0		ENST00000495005.5_1_21:35281377-35288052:-|nuORF;ENST00000491703.5_1_21:35279611-35286837:-|nuORF;ENSG00000241837|ENST00000290299|ATP5PO	ENST00000495005.5_1_21:35281377-35288052:-|nuORF	ENST00000495005.5_1_21:35281377-35288052:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.787841796875	2	479.279452	956.544351	0.24718	0.00011847	0.037588	1.8015E-05	0.28477	0.00013649	479.2796456303582	40.289	0.96464	40.289	39.723	40.688	0					63	34	3	0	0	0	0.30503	1	8641	8641		30.225	3.8835	1	837070			54438	8536	31143	31144	66713	66713					0.0643408151404401
VRPPVQVY	8	Unmodified	_VRPPVQVY_					0	0	0		ENST00000495005.5_1_21:35281377-35288052:-|nuORF;ENST00000491703.5_1_21:35279611-35286837:-|nuORF;ENSG00000241837|ENST00000290299|ATP5PO	ENST00000495005.5_1_21:35281377-35288052:-|nuORF	ENST00000495005.5_1_21:35281377-35288052:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7879333496094	2	479.279452	956.544351	0.4699	0.00022521	-0.13636	-6.5354E-05	0.33354	0.00015986	479.27952770174073	40.145	1.0601	40.237	39.607	40.667	0.09267					63	37	3	0	0	0	0.30503	1	8605	8605		30.225	3.8835	1	830630			54439	8536	31143	31144	66714	66714					0.0643408151404401
VRPPVQVY	8	Unmodified	_VRPPVQVY_					0	0	0		ENST00000495005.5_1_21:35281377-35288052:-|nuORF;ENST00000491703.5_1_21:35279611-35286837:-|nuORF;ENSG00000241837|ENST00000290299|ATP5PO	ENST00000495005.5_1_21:35281377-35288052:-|nuORF	ENST00000495005.5_1_21:35281377-35288052:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.78790283203125	2	479.279452	956.544351	0.35725	0.00017122	-0.0098562	-4.7239E-06	0.34739	0.0001665	479.2796012494199	40.13	1.1665	40.229	39.396	40.563	0.099407					71	41	3	0	0	0	0.30503	1	8582	8582		30.225	3.8835	1	944510			54440	8536	31143	31144	66715	66715					0.0643408151404401
VRPQKAGK	8	Unmodified	_VRPQKAGK_					0	0	0		nc|ENSG00000123243|Q86UX2-4|ITIH5;ENST00000476417.5_1_10:7615057-7659255:-|nuORF;nc|ENSG00000123243|Q86UX2-3|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5;nc|ENSG00000123243|Q86UX2-2|ITIH5	nc|ENSG00000123243|Q86UX2-4|ITIH5;nc|ENSG00000123243|Q86UX2-2|ITIH5	nc|ENSG00000123243|Q86UX2-2|ITIH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.27740478515625	2	442.277244	882.539935	-0.091817	-4.0608E-05	0.27684	0.00012244	0.18503	8.1833E-05	442.2772772915958	18.841	0.60292	18.783	18.539	19.142	-0.058174					51	20	3	0	0	0	0.45169	1	2031	2031		5.2307	0.47466	1	268010			54441	10945;12682	31144	31145	66716	66716					0.09396617091135795
VRPRRGTAPAG	11	Unmodified	_VRPRRGTAPAG_					0	0	0		ENSG00000205089|ENST00000378731|CCNI2;nc|ENSG00000205089|Q6ZMN8-3|CCNI2;nc|ENSG00000205089|Q6ZMN8-2|CCNI2	ENSG00000205089|ENST00000378731|CCNI2	ENSG00000205089|ENST00000378731|CCNI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.7881469726562	2	569.333613	1136.65267	-0.037253	-2.1209E-05	-0.057936	-3.2985E-05	-0.095188	-5.4194E-05	569.3333808754063	15.18	0.54833	15.18	14.949	15.498	0					27	18	2	0	0	0	0.33255	1	941	941		2.9952	1.151	1	26712			54442	8271	31145	31146	66717	66717					0.08981265817169515
VRPVALVL	8	Unmodified	_VRPVALVL_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.2071533203125	2	433.794738	865.574923	-0.096204	-4.1733E-05	0.041875	1.8165E-05	-0.054329	-2.3568E-05	433.79471161180544	55.587	0.50476	55.587	55.35	55.854	0					31	17	3	0	0	0	0.29855	1	13229	13229		24.674	0	1	386190			54443	1983	31146	31147	66718	66718					0.13675859899069565
VRPVALVL	8	Unmodified	_VRPVALVL_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.7111511230469	2	433.794738	865.574923	0.19302	8.373E-05	-0.14059	-6.0988E-05	0.052426	2.2742E-05	433.7945672753822	55.52	0.53383	55.591	55.371	55.905	0.070885					36	19	3	0	0	0	0.29855	1	13229	13229		24.674	0	1	480880			54444	1983	31146	31147	66719	66719					0.13675859899069565
VRPVALVL	8	Unmodified	_VRPVALVL_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	433.794738	865.574923	-0.032046	-1.3901E-05	-0.11136	-4.8308E-05	-0.14341	-6.221E-05	433.79464329882114	55.617	0.53376	55.598	55.319	55.853	-0.019077	0.0059754	-4.7056E-05	NaN	24.674	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431030			54445	1983	31146	31147							0.13675859899069565
VRPVVRSFSK	10	Unmodified	_VRPVVRSFSK_					0	0	0			REV__ENST00000571145.1_1_15:43708608-43712911:-|nuORF	REV__ENST00000571145.1_1_15:43708608-43712911:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8565063476562	2	587.85639	1173.69823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.603	1	14.603	14.103	15.103	0								0	0	0	0.38187	1	775	775		1.3295	0.25807	1		+		54446	13691	31147	31148	66720	66720					0.11832491279551505
VRQKIRTQQKF	11	Unmodified	_VRQKIRTQQKF_					0	0	0		ENST00000382100.7_1_9:2651438-2651489:+|nuORF	ENST00000382100.7_1_9:2651438-2651489:+|nuORF	ENST00000382100.7_1_9:2651438-2651489:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.9748229980469	3	477.956282	1430.84702	0.27559	0.00013172	-0.021416	-1.0236E-05	0.25417	0.00012148	477.9562243680456	40.339	1.4242	40.339	39.644	41.069	0					146	51	4	0	0	0	0.46971	1	8547	8547		2.084	0.62885	1	3653800			54447	10004	31148	31149	66721	66721					0.14882597182463542
VRQKIRTQQKF	11	Unmodified	_VRQKIRTQQKF_					0	0	0		ENST00000382100.7_1_9:2651438-2651489:+|nuORF	ENST00000382100.7_1_9:2651438-2651489:+|nuORF	ENST00000382100.7_1_9:2651438-2651489:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.9748840332031	3	477.956282	1430.84702	0.47482	0.00022694	-0.34046	-0.00016272	0.13436	6.4219E-05	477.9561191462074	40.156	1.1621	40.249	39.69	40.852	0.09267					118	41	4	0	0	0	0.45629	1	8501	8501		3.8459	1.4111	1	3646300			54448	10004	31148	31149	66722	66722					0.14882597182463542
VRQRERKPV	9	Unmodified	_VRQRERKPV_					0	0	0		ENST00000371313.2_1_X:119761281-119763842:-|nuORF	ENST00000371313.2_1_X:119761281-119763842:-|nuORF	ENST00000371313.2_1_X:119761281-119763842:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.357177734375	2	584.357088	1166.69962	0.50273	0.00029377	-0.51506	-0.00030098	-0.012331	-7.2054E-06	584.3565762588884	84.597	0.60403	84.677	84.394	84.998	0.080887					74	23	4	0	0	0	0.33508	1	22112	22112		3.5965	0	1	912950			54449	9814	31149	31150	66723	66723					0.122941253683166
VRQRRLPHRRA	11	Unmodified	_VRQRRLPHRRA_					0	0	0			REV__ENST00000234610.5_1_1:1631484-1633139:+|nuORF	REV__ENST00000234610.5_1_1:1631484-1633139:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.2991638183594	3	482.299265	1443.87596	-0.19847	-9.5722E-05	0.65845	0.00031757	0.45998	0.00022185	482.29938481707006	103	0.51773	103	102.65	103.17	0					189	71	4	0	0	0	0.46554	1	27370	27370		2.6312	0	1	2501400	+		54450	19480	31150	31151	66724	66724					0.1717817932210437
VRQSKEELI	9	Unmodified	_VRQSKEELI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.8043212890625	2	551.316763	1100.61897	0.17691	9.7534E-05	0.73093	0.00040298	0.90785	0.00050051	551.3166609105502	15.725	0.40332	15.661	15.487	15.89	-0.064414					16	13	2	0	0	0	0.26168	1	1072	1072		1.8442	0	1	26007			54451	6433	31151	31152	66725	66725					0.07268799534767822
VRQSKEELI	9	Unmodified	_VRQSKEELI_					0	0	0		nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47	nc|ENSG00000170242|Q96K76-2|USP47	nc|ENSG00000170242|Q96K76-2|USP47	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	551.316763	1100.61897	0.21485	0.00011845	0.13692	7.5489E-05	0.35177	0.00019394	551.8183108980223	15.838	0.29195	15.728	15.579	15.871	-0.10982	0.033569	-0.00028154	NaN	1.8442	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24024			54452	6433	31151	31152							0.07268799534767822
VRQTPATP	8	Unmodified	_VRQTPATP_					0	0	0		HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|44|2|sense	HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|44|2|sense	HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|44|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.780517578125	2	435.245609	868.476666	0.080243	3.4925E-05	0.3606	0.00015695	0.44085	0.00019188	435.2460096218166	29.094	0.26604	29.094	28.952	29.218	0					12	9	2	0	0	0	0.34272	1	5166	5166		7.9102	0	1	145170			54453	12400	31152	31153	66726	66726					0.03716631583245089
VRRACEILEK	10	Unmodified	_VRRACEILEK_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.5763854980469	3	406.232535	1215.67578	-0.44072	-0.00017903	0.69379	0.00028184	0.25307	0.00010281	406.23275802474217	13.355	0.16703	13.287	13.162	13.329	-0.067496					8	5	2	0	0	0	0.32051	1	375	375		3.8763	0	1	30913	+		54454	15844	31153	31154	66727	66727					0.07656523819605354
VRRAGAELGAW	11	Unmodified	_VRRAGAELGAW_					0	0	0			REV__ENST00000288699.10_1_2:27170263-27170530:+|nuORF	REV__ENST00000288699.10_1_2:27170263-27170530:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8287963867188	2	593.327996	1184.64144	0.67463	0.00040028	-1.075	-0.0006378	-0.40032	-0.00023752	593.3278206554155	84.615	0.56982	84.615	84.301	84.871	0					45	20	3	0	0	0	0.44192	1	22102	22102		5.7319	2.1354	1	173570	+		54455	19742	31154	31155	66728	66728					0.05650443723038734
VRRAGAELGAW	11	Unmodified	_VRRAGAELGAW_					0	0	0			REV__ENST00000288699.10_1_2:27170263-27170530:+|nuORF	REV__ENST00000288699.10_1_2:27170263-27170530:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	593.327996	1184.64144	0.67463	0.00040028	-1.075	-0.0006378	-0.40032	-0.00023752	593.3278206554155	84.615	0.56982	84.615	84.301	84.871	0	0.041245	-0.00040569	NaN	5.7319	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173570	+		54456	19742	31154	31155							0.05650443723038734
VRRAGAELGAW	11	Unmodified	_VRRAGAELGAW_					0	0	0			REV__ENST00000288699.10_1_2:27170263-27170530:+|nuORF	REV__ENST00000288699.10_1_2:27170263-27170530:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	593.327996	1184.64144	0.61009	0.00036198	-0.63903	-0.00037915	-0.028936	-1.7168E-05	593.3279904844254	84.518	0.67143	84.505	84.246	84.917	-0.01284	-0.069	0.00011161	NaN	5.7319	63	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243400	+		54457	19742	31154	31155							0.05650443723038734
VRRDEPKVK	9	Unmodified	_VRRDEPKVK_					0	0	0		nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;nc|ENSG00000139220|O75334-7|PPFIA2;nc|ENSG00000139220|O75334-5|PPFIA2;nc|ENSG00000139220|O75334-2|PPFIA2;nc|ENSG00000139220|O75334-4|PPFIA2	nc|ENSG00000139220|O75334-6|PPFIA2	nc|ENSG00000139220|O75334-6|PPFIA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.6444702148438	2	563.838197	1125.66184	0.11021	6.2138E-05	-1.7211	-0.00097043	-1.6109	-0.00090829	563.8370671659237	14.779	0.31204	14.673	14.539	14.851	-0.10606					21	10	3	0	0	0	0.25843	1	812	812		5.7319	1.7875	1	76275			54458	4220	31155	31156	66729	66729					0.10403614382857995
VRRIAQPR	8	Unmodified	_VRRIAQPR_					0	0	0		AluSq2_dup15990|chr5:7863838-7864149:-|1.8783505329426569|0.245435638264638|2.94|538.0|14|3|sense	AluSq2_dup15990|chr5:7863838-7864149:-|1.8783505329426569|0.245435638264638|2.94|538.0|14|3|sense	AluSq2_dup15990|chr5:7863838-7864149:-|1.8783505329426569|0.245435638264638|2.94|538.0|14|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.95123291015625	2	498.314692	994.614831	0.043446	2.165E-05	0.030466	1.5182E-05	0.073912	3.6831E-05	498.3146816257014	18.375	0.48021	18.317	18.059	18.539	-0.058174					29	16	2	0	0	0	0.34437	1	1965	1965		0.69038	0	1	62431			54459	34	31156	31157	66730	66730					0.11730799622375798
VRRLQQLWL	9	Unmodified	_VRRLQQLWL_					0	0	0			REV__ENST00000574767.5_1_17:78518736-78518931:+|nuORF	REV__ENST00000574767.5_1_17:78518736-78518931:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3701171875	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.74	1	115.72	115.22	116.22	-0.020988								0	0	0	0.2672	1	30005	30005		0.52476	0.12405	1		+		54460	22433	31157	31158	66731	66731					0.13292484033513574
VRRPARRRQ	9	Unmodified	_VRRPARRRQ_					0	0	0		ENSG00000105122|ENST00000343625|RASAL3;nc|ENSG00000105122|Q86YV0-2|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	ENSG00000105122|ENST00000343625|RASAL3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8563842773438	2	597.873771	1193.73299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.95	1	101.95	101.45	102.45	0								0	0	0	0.26334	1	27166	27166		2.0598	0	1				54461	1946	31158	31159	66732	66732					0.14387171930889053
VRRPLYKM	8	Unmodified	_VRRPLYKM_					0	0	0		nc|ENSG00000106526|Q9C0K3-2|ACTR3C;ENSG00000106526|ENST00000683684|ACTR3C	nc|ENSG00000106526|Q9C0K3-2|ACTR3C	nc|ENSG00000106526|Q9C0K3-2|ACTR3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8168334960938	2	531.815679	1061.6168	0.49315	0.00026227	1.1129	0.00059184	1.606	0.00085411	531.816739436679	81.506	2.0425	81.482	81.161	83.204	-0.02404					202	83	5	0	0	0	0.45169	1	21403	21403		5.2307	0	1	2014200			54462	2081	31159	31160	66733	66733					0.08846092315957321
VRRQLDGRVL	10	Unmodified	_VRRQLDGRVL_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.370361328125	2	606.370195	1210.72584	0.64072	0.00038851	-0.095332	-5.7806E-05	0.54539	0.00033071	606.36993872621	86.778	1.4348	86.778	86.149	87.584	0					145	59	4	0	0	0	0.38952	2	22715	22715;22948		5.7319	0	1	1446600			54463	6532	31160	31161	66734;66735	66734					0.12890394539795125
VRRQLDGRVL	10	Unmodified	_VRRQLDGRVL_					0	0	0		ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	ENSG00000171298|ENST00000302262|GAA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3705444335938	2	606.370195	1210.72584	0.45985	0.00027884	-0.18945	-0.00011488	0.2704	0.00016396	606.3699776312902	86.955	2.1455	86.949	86.188	88.334	-0.0056229					252	99	4	0	0	0	0.38952	2	22703	22703;22845		5.7319	0	1	1359200			54464	6532	31160	31161	66736;66737	66736					0.12890394539795125
VRRQQRRRT	9	Unmodified	_VRRQQRRRT_					0	0	0		ENST00000523367.1_1_8:63161359-63775831:+|nuORF	ENST00000523367.1_1_8:63161359-63775831:+|nuORF	ENST00000523367.1_1_8:63161359-63775831:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.3829345703125	2	628.38196	1254.74937	0.46917	0.00029482	0.29911	0.00018796	0.76828	0.00048277	628.3826006048772	83.955	2.7316	83.938	82.281	85.013	-0.01683					267	114	3	0	0	0	0.31038	5	21685	21685;21733;21832;21989;22177		7.2892	7.2892	1	8667400			54465	11509	31161	31162	66738;66739;66740;66741;66742	66738					0.13218253096965782
VRRQRQPPL	9	Unmodified	_VRRQRQPPL_					0	0	0		ENST00000377245.8_3_9:71789338-71831310:+|nuORF;ENST00000453658.6_2_9:71766602-71831310:+|nuORF;ENST00000539225.2_3_9:71820136-71831310:+|nuORF	ENST00000377245.8_3_9:71789338-71831310:+|nuORF	ENST00000377245.8_3_9:71789338-71831310:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3519287109375	2	575.351806	1148.68906	0.2894	0.00016651	0.46156	0.00026556	0.75096	0.00043207	575.3515110947853	90.018	0.56666	90.018	89.776	90.342	0					94	48	3	0	0	0	0.34536	1	23838	23838		2.0598	0	1	202720			54466	9933	31162	31163	66743	66743					0.12066142713911177
VRRRNTQKYLQ	11	Unmodified	_VRRRNTQKYLQ_					0	0	0		nc|ENSG00000145996|Q5VV42-3|CDKAL1;CDKAL1|p.M405Nfs*39|1|0.1|ENSG00000145996|chr6:21065205-21065206|-/ACAATACCTTACAAGAAAAAGATCTTACCACTTGTGC|frameshift_variant;ENSG00000145996|ENST00000274695|CDKAL1	nc|ENSG00000145996|Q5VV42-3|CDKAL1	nc|ENSG00000145996|Q5VV42-3|CDKAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2747802734375	3	487.951419	1460.83243	0.16409	8.0068E-05	1.6632	0.00081155	1.8273	0.00089162	487.9524213673234	16.376	0.50636	16.376	16.152	16.659	0					35	17	3	0	0	0	0.33296	1	1263	1263		2.6312	1.1761	1	72076			54467	104	31163	31164	66744	66744					0.12044525034320941
VRRRNTQKYLQ	11	Unmodified	_VRRRNTQKYLQ_					0	0	0		nc|ENSG00000145996|Q5VV42-3|CDKAL1;CDKAL1|p.M405Nfs*39|1|0.1|ENSG00000145996|chr6:21065205-21065206|-/ACAATACCTTACAAGAAAAAGATCTTACCACTTGTGC|frameshift_variant;ENSG00000145996|ENST00000274695|CDKAL1	nc|ENSG00000145996|Q5VV42-3|CDKAL1	nc|ENSG00000145996|Q5VV42-3|CDKAL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.27423095703125	3	487.951419	1460.83243	0.08355	4.0768E-05	1.5044	0.00073408	1.588	0.00077484	487.9524928702301	16.565	0.49816	16.45	16.139	16.638	-0.11434					37	17	3	0	0	0	0.46704	2	1348	1297;1348		2.4348	1.1051	1	87757			54468	104	31163	31164	66745;66746	66746					0.12044525034320941
VRRSRKHR	8	Unmodified	_VRRSRKHR_					0	0	0			REV__ENST00000493307.1_1_7:150020428-150023055:+|nuORF	REV__ENST00000493307.1_1_7:150020428-150023055:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.809326171875	2	547.841939	1093.66933	0.8254	0.00045219	1.6563	0.00090737	2.4817	0.0013596	547.8425667814722	34.073	0.21919	34.073	33.916	34.135	0					11	7	2	0	0	0	0.34167	1	6685	6685		11.64	1.5664	1	84128	+		54469	21636	31164	31165	66747	66747					0.12623811493790527
VRRSRKHR	8	Unmodified	_VRRSRKHR_					0	0	0			REV__ENST00000493307.1_1_7:150020428-150023055:+|nuORF	REV__ENST00000493307.1_1_7:150020428-150023055:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.8093872070312	2	547.841939	1093.66933	0.95084	0.00052091	1.9983	0.0010947	2.9491	0.0016156	547.8429370905743	34.002	0.27152	34.068	33.904	34.176	0.06636					14	9	2	0	0	0	0.34294	1	6621	6621		7.2892	1.0834	1	98380	+		54470	21636	31164	31165	66748	66748					0.12623811493790527
VRRSRKHR	8	Unmodified	_VRRSRKHR_					0	0	0			REV__ENST00000493307.1_1_7:150020428-150023055:+|nuORF	REV__ENST00000493307.1_1_7:150020428-150023055:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8094482421875	2	547.841939	1093.66933	0.38171	0.00020911	2.3632	0.0012947	2.7449	0.0015038	547.8429588916536	33.928	0.21982	33.995	33.879	34.099	0.066704					11	7	2	0	0	0	0.34313	1	6611	6611		6.7232	0	1	107620	+		54471	21636	31164	31165	66749	66749					0.12623811493790527
VRRVMLLQK	9	Unmodified	_VRRVMLLQK_					0	0	0		ENST00000531120.5_1_11:32611159-32616479:+|nuORF	ENST00000531120.5_1_11:32611159-32616479:+|nuORF	ENST00000531120.5_1_11:32611159-32616479:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2892456054688	2	571.86316	1141.71177	0.43735	0.0002501	-1.2475	-0.00071343	-0.8102	-0.00046332	571.8624089047463	82.902	0.37247	82.902	82.733	83.105	0					20	13	2	0	0	0	0.25706	1	21640	21640		6.7232	4.8789	1	92649			54472	11624	31165	31166	66750	66750					0.14658025787161932
VRRVMLLQK	9	Unmodified	_VRRVMLLQK_					0	0	0		ENST00000531120.5_1_11:32611159-32616479:+|nuORF	ENST00000531120.5_1_11:32611159-32616479:+|nuORF	ENST00000531120.5_1_11:32611159-32616479:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	571.86316	1141.71177	0.40372	0.00023087	-0.82414	-0.00047129	-0.42042	-0.00024042	571.8627323409947	82.898	0.33847	82.878	82.768	83.106	-0.020584	-0.012102	0.00020359	NaN	6.7232	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130070			54473	11624	31165	31166							0.14658025787161932
VRRWEREGA	9	Unmodified	_VRRWEREGA_					0	0	0			REV__ENST00000488653.6_1_3:123680081-123680240:-|nuORF	REV__ENST00000488653.6_1_3:123680081-123680240:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.7713012695312	2	579.809971	1157.60539	0.54038	0.00031332	0.54871	0.00031815	1.0891	0.00063146	579.8107071741907	83.654	0.18082	83.654	83.53	83.711	0					7	5	2	0	0	0	0.25988	1	21892	21892		3.9444	0.3479	1	64031	+		54474	21578	31166	31167	66751	66751					0.032889865461811496
VRSALAFEL	9	Unmodified	_VRSALAFEL_					0	0	0		nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF;ENSG00000213563|ENST00000524821|C8orf82	nc|nan|Q6P1X6-2|C8orf82	nc|nan|Q6P1X6-2|C8orf82	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.290283203125	2	503.290017	1004.56548	0.40846	0.00020557	0.31022	0.00015613	0.71868	0.0003617	503.2902321192707	58.704	0.66731	58.704	58.439	59.107	0					53	22	3	0	0	0	0.044188	1	14242	14242		67.838	2.6031	1	1140600			54475	8351	31167	31168	66752	66752					0.06338046822895649
VRSALAFEL	9	Unmodified	_VRSALAFEL_					0	0	0		nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF;ENSG00000213563|ENST00000524821|C8orf82	nc|nan|Q6P1X6-2|C8orf82	nc|nan|Q6P1X6-2|C8orf82	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.5930480957031	2	503.290017	1004.56548	0.37854	0.00019052	0.31033	0.00015619	0.68887	0.0003467	503.29034493349553	58.516	0.67288	58.607	58.342	59.015	0.091301					52	23	3	0	0	0	0.1558	1	14182	14182		41.956	15.687	1	975580			54476	8351	31167	31168	66753	66753					0.06338046822895649
VRSALAFEL	9	Unmodified	_VRSALAFEL_					0	0	0		nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF;ENSG00000213563|ENST00000524821|C8orf82	nc|nan|Q6P1X6-2|C8orf82	nc|nan|Q6P1X6-2|C8orf82	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.2900085449219	2	503.290017	1004.56548	0.48399	0.00024359	0.059884	3.0139E-05	0.54388	0.00027373	503.290141745017	58.747	0.70151	58.732	58.47	59.171	-0.014267					54	24	3	0	0	0	0.014206	1	14249	14249		72.968	20.7	1	1317000			54477	8351	31167	31168	66754	66754					0.06338046822895649
VRSFAPIL	8	Unmodified	_VRSFAPIL_					0	0	0		ENSG00000067704|ENST00000366922|IARS2;ENST00000467924.1_1_1:220313569-220316509:+|nuORF	ENSG00000067704|ENST00000366922|IARS2	ENSG00000067704|ENST00000366922|IARS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.60009765625	2	451.776545	901.538538	0.04784	2.1613E-05	-0.35992	-0.0001626	-0.31208	-0.00014099	451.77633749887235	57.5	0.35719	57.483	57.197	57.555	-0.0172					14	12	2	0	0	0	0.34297	1	13799	13799		6.3541	0	1	98667			54478	868	31168	31169	66755	66755					0.08382983002377387
VRSPSRDQQSL	11	Unmodified	_VRSPSRDQQSL_					0	0	0		ENST00000514782.5_1_4:40546450-40632002:-|nuORF;ENST00000514014.1_1_4:40546450-40632592:-|nuORF;ENST00000515053.5_1_4:40546450-40632273:-|nuORF	ENST00000514782.5_1_4:40546450-40632002:-|nuORF	ENST00000514782.5_1_4:40546450-40632002:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8932189941406	3	424.893347	1271.65821	-0.24829	-0.0001055	0.18186	7.7271E-05	-0.066433	-2.8227E-05	424.893426376151	19.312	0.8988	19.312	18.923	19.822	0					73	31	3	0	0	0	0.35271	1	2174	2174		10.527	2.241	1	429810			54479	11407	31169	31170	66756	66756					0.03324899818335325
VRSVWLSR	8	Unmodified	_VRSVWLSR_					0	0	0			REV__ENSG00000179673|ENST00000322329|RPRML	REV__ENSG00000179673|ENST00000322329|RPRML	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.28131103515625	2	501.795801	1001.57705	0.40229	0.00020187	-0.74475	-0.00037371	-0.34245	-0.00017184	501.79551862808694	37.799	0.76382	37.89	37.445	38.209	0.090881					37	27	2	0	0	0	0.34039	1	7739	7739		15.847	9.6414	1	217630	+		54480	18087	31170	31171	66757	66757					0.07632288636909834
VRTNQIPR	8	Unmodified	_VRTNQIPR_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2;ENSG00000101337|ENST00000398022|TM9SF4	ENSG00000125304|ENST00000376387|TM9SF2;ENSG00000101337|ENST00000398022|TM9SF4	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.673828125	2	492.290882	982.567212	0.18295	9.0064E-05	-0.55314	-0.00027231	-0.37019	-0.00018224	492.29080534246185	18.924	0.84418	18.806	18.414	19.258	-0.11739					50	29	2	0	0	0	0.34198	1	2072	2072		6.7232	0	1	150280			54481	3196;1684	31171	31172	66758	66758					0.07523100631510715
VRTPKRSS	8	Unmodified	_VRTPKRSS_					0	0	0			REV__ENST00000296140.3_1_3:46245112-46245334:-|nuORF	REV__ENST00000296140.3_1_3:46245112-46245334:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.77734375	2	465.777608	929.540663	0.069502	3.2372E-05	-1.2182	-0.00056741	-1.1487	-0.00053504	465.7775319258724	71.513	3.7412	71.57	70.875	74.617	0.056572					306	134	4	0	0	0	0.45431	1	18082	18082		4.3292	0	1	2579700	+		54482	19787	31172	31173	66759	66759					0.07307411740180214
VRTPRGVL	8	Unmodified	_VRTPRGVL_					0	0	0		ENST00000493195.5_1_1:159899139-159902434:-|nuORF;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9;ENST00000496645.5_1_1:159899888-159901393:-|nuORF;ENST00000476102.1_1_1:159898784-159904055:-|nuORF	ENST00000493195.5_1_1:159899139-159902434:-|nuORF	ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.8642578125	2	449.285069	896.555585	-0.013266	-5.9602E-06	0.27584	0.00012393	0.26257	0.00011797	449.2850440477003	23.204	0.61309	23.117	22.82	23.433	-0.08761					33	21	2	0	0	0	0.34353	1	3309	3309		4.756	0	1	92710			54483	1259	31173	31174	66760	66760					0.10316903608190842
VRTPYTMSY	9	Oxidation (M)	_VRTPYTM(Oxidation (M))SY_		VRTPYTM(1)SY		VRTPYTM(150)SY	0	0	1		nc|ENSG00000239306|Q96PK6-5|RBM14;ENSG00000173933|ENST00000310092|RBM4	nc|ENSG00000239306|Q96PK6-5|RBM14	nc|ENSG00000239306|Q96PK6-5|RBM14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2686157226562	2	567.268424	1132.5223	0.58413	0.00033136	0.10912	6.1902E-05	0.69325	0.00039326	567.2685450577617	33.938	1.1621	33.938	33.456	34.618	0					100	41	5	0	0	0	2.5511E-05	4	6580	6580;6622;6670;6723		152.89	120.58	1	2451000			54484	6763	31174	31175	66761;66762;66763;66764	66761		773			-0.038665110166903105
VRTPYTMSY	9	Oxidation (M)	_VRTPYTM(Oxidation (M))SY_		VRTPYTM(1)SY		VRTPYTM(170)SY	0	0	1		nc|ENSG00000239306|Q96PK6-5|RBM14;ENSG00000173933|ENST00000310092|RBM4	nc|ENSG00000239306|Q96PK6-5|RBM14	nc|ENSG00000239306|Q96PK6-5|RBM14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2689208984375	2	567.268424	1132.5223	0.89332	0.00050675	-0.26663	-0.00015125	0.6267	0.00035551	567.268352850401	33.747	1.0806	33.814	33.38	34.461	0.06636					85	38	3	0	0	0	3.6949E-07	5	6562	6517;6562;6607;6654;6698		165.72	133.41	1	2612600			54485	6763	31174	31175	66765;66766;66767;66768;66769	66766		773			-0.038665110166903105
VRTPYTMSY	9	Oxidation (M)	_VRTPYTM(Oxidation (M))SY_		VRTPYTM(1)SY		VRTPYTM(150)SY	0	0	1		nc|ENSG00000239306|Q96PK6-5|RBM14;ENSG00000173933|ENST00000310092|RBM4	nc|ENSG00000239306|Q96PK6-5|RBM14	nc|ENSG00000239306|Q96PK6-5|RBM14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2689208984375	2	567.268424	1132.5223	0.11015	6.2485E-05	0.49184	0.00027901	0.60199	0.00034149	567.2687719517684	33.768	1.1648	33.835	33.358	34.522	0.0667					88	41	3	0	0	0	2.5511E-05	4	6559	6514;6559;6610;6659		152.89	120.58	1	2861700			54486	6763	31174	31175	66770;66771;66772;66773	66771		773			-0.038665110166903105
VRTQADTLT	9	Unmodified	_VRTQADTLT_					0	0	0			REV__nc|ENSG00000144283|Q99569-2|PKP4	REV__nc|ENSG00000144283|Q99569-2|PKP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.758056640625	2	502.772188	1003.52982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.259	1	85.259	84.759	85.759	0								0	0	0	0.22377	1	22387	22387		14.838	4.0143	1		+		54487	16224	31175	31176	66774	66774					0.02819964575223821
VRTRAAALGA	10	Unmodified	_VRTRAAALGA_					0	0	0			REV__ENST00000380305.4_1_6:3259174-3267943:+|nuORF	REV__ENST00000380305.4_1_6:3259174-3267943:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.39971923828125	2	493.298707	984.582862	-0.091454	-4.5114E-05	-0.25713	-0.00012684	-0.34858	-0.00017195	493.29854172095236	12.16	0.23855	12.091	12.014	12.253	-0.06806					29	10	4	0	0	0	0.41892	1	22	22		0	0	1	108910	+		54488	20547	31176	31177	66775	66775					0.08995387148536338
VRTRAAALGA	10	Unmodified	_VRTRAAALGA_					0	0	0			REV__ENST00000380305.4_1_6:3259174-3267943:+|nuORF	REV__ENST00000380305.4_1_6:3259174-3267943:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.39971923828125	2	493.298707	984.582862	-0.091454	-4.5114E-05	-0.25713	-0.00012684	-0.34858	-0.00017195	493.29854172095236	12.16	0.23855	12.091	12.014	12.253	-0.06806					29	10	4	0	0	0	0.32176	1	22	22		0	0	1	108910	+		54489	20547	31176	31177	66776	66776					0.08995387148536338
VRTRGLSSL	9	Unmodified	_VRTRGLSSL_					0	0	0			REV__ENST00000566567.1_1_9:138999849-139000686:-|nuORF	REV__ENST00000566567.1_1_9:138999849-139000686:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7983703613281	2	494.79854	987.582528	0.38484	0.00019042	0.14874	7.3597E-05	0.53358	0.00026401	494.7983583433352	79.936	0.95547	79.907	79.57	80.525	-0.028923					58	33	2	0	0	0	0.33508	1	20769	20769		3.5965	0	1	230440	+		54490	22372	31177	31178	66777	66777					0.08823967428713786
VRTRPPAVPV	10	Unmodified	_VRTRPPAVPV_					0	0	0		ENST00000395323.7_1_2:30454404-30457281:+|nuORF	ENST00000395323.7_1_2:30454404-30457281:+|nuORF	ENST00000395323.7_1_2:30454404-30457281:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.804443359375	2	546.337833	1090.66111	0.35034	0.00019141	0.38155	0.00020845	0.73189	0.00039986	546.3378864167864	22.146	0.23514	22.146	22.017	22.252	0					10	7	2	0	0	0	0.32132	1	3081	3081		1.4819	0.79152	1	35888			54491	10087	31178	31179	66778	66778					0.11940819733786157
VRTWIMRKLGK	11	Unmodified	_VRTWIMRKLGK_					0	0	0		PWWP2A|p.L418Sfs*19|1|0.04|ENSG00000170234|chr5:160093399-160093400|-/CAGGACTTGAG|frameshift_variant	PWWP2A|p.L418Sfs*19|1|0.04|ENSG00000170234|chr5:160093399-160093400|-/CAGGACTTGAG|frameshift_variant	PWWP2A|p.L418Sfs*19|1|0.04|ENSG00000170234|chr5:160093399-160093400|-/CAGGACTTGAG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.2835388183594	3	463.283341	1386.82819	0.1117	5.175E-05	0.40309	0.00018675	0.5148	0.0002385	463.28340793298895	89.167	1.576	89.167	88.302	89.878	0					316	88	5	0	0	0	0.46704	1	23571	23571		2.4348	1.22	1	1562100			54492	13057	31179	31180	66779	66779					0.1502534428702802
VRVDRDYVL	9	Unmodified	_VRVDRDYVL_					0	0	0		ENSG00000109854|ENST00000451739|HTATIP2;nc|ENSG00000109854|Q9BUP3-3|HTATIP2	ENSG00000109854|ENST00000451739|HTATIP2	ENSG00000109854|ENST00000451739|HTATIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8162841796875	2	567.81693	1133.61931	-0.067624	-3.8398E-05	0.27636	0.00015692	0.20873	0.00011852	567.8168270344858	38.622	0.55352	38.622	38.434	38.988	0					40	19	3	0	0	0	0.12279	1	8079	8079		34.932	16.786	1	234670			54493	2276	31180	31181	66780	66780					0.05784219254610434
VRVDRDYVL	9	Unmodified	_VRVDRDYVL_					0	0	0		ENSG00000109854|ENST00000451739|HTATIP2;nc|ENSG00000109854|Q9BUP3-3|HTATIP2	ENSG00000109854|ENST00000451739|HTATIP2	ENSG00000109854|ENST00000451739|HTATIP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	567.81693	1133.61931	0.41076	0.00023324	-0.51801	-0.00029414	-0.10725	-6.0898E-05	567.8165789517725	38.534	0.37941	38.625	38.455	38.834	0.090885	-0.0017401	-0.0003436	NaN	34.932	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256950			54494	2276	31180	31181							0.05784219254610434
VRVDRDYVL	9	Unmodified	_VRVDRDYVL_					0	0	0		ENSG00000109854|ENST00000451739|HTATIP2;nc|ENSG00000109854|Q9BUP3-3|HTATIP2	ENSG00000109854|ENST00000451739|HTATIP2	ENSG00000109854|ENST00000451739|HTATIP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	567.81693	1133.61931	0.36953	0.00020983	-0.36268	-0.00020594	0.0068477	3.8883E-06	567.8166830409443	38.536	0.48402	38.633	38.437	38.921	0.097527	0.0065891	-0.00016721	NaN	34.932	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325030			54495	2276	31180	31181							0.05784219254610434
VRVMTGPR	8	Unmodified	_VRVMTGPR_					0	0	0		SH3TC1|p.R238Sfs*38|1|0.33|ENSG00000125089|chr4:8217041-8217041|G/-|frameshift_variant;ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1	SH3TC1|p.R238Sfs*38|1|0.33|ENSG00000125089|chr4:8217041-8217041|G/-|frameshift_variant	SH3TC1|p.R238Sfs*38|1|0.33|ENSG00000125089|chr4:8217041-8217041|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.608154296875	2	458.263279	914.512005	0.31629	0.00014494	0.74608	0.0003419	1.0624	0.00048685	458.2635376262615	91.269	0.47526	91.269	91.082	91.557	0.00046539					78	32	3	0	0	0	0.34247	1	24275	24275		8.5933	0	1	1207600			54496	3191	31181	31182	66781	66781					0.051329708394064255
VRVQVQDH	8	Unmodified	_VRVQVQDH_					0	0	0		ENSG00000160949|ENST00000409379|TONSL;nc|ENSG00000160949|Q96HA7-2|TONSL;ENST00000497613.2_1_8:145658938-145666334:-|nuORF	ENSG00000160949|ENST00000409379|TONSL	ENSG00000160949|ENST00000409379|TONSL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.72705078125	2	490.76724	979.519927	0.13239	6.4974E-05	0.057333	2.8137E-05	0.18973	9.3111E-05	490.7672732271984	16.386	0.61092	16.272	15.921	16.532	-0.11434					28	20	2	0	0	0	0.34437	1	1269	1269		0.69038	0	1	37801			54497	5500	31182	31183	66782	66782					0.029348213605203455
VRWLTPVIP	9	Unmodified	_VRWLTPVIP_					0	0	0		ENST00000592434.5_2_19:45404483-45404828:+|nuORF;ENST00000369980.7_2_X:153276741-153276987:-|nuORF;ENST00000489142.5_1_10:114207101-114244859:+|nuORF;ENST00000397006.2_1_5:40777312-40798264:-|nuORF;ENST00000251527.9_1_7:158524237-158524429:-|nuORF;ENST00000513246.5_3_5:179131225-179131366:+|nuORF;AluJb_dup51699|chr7:128460708-128461000:-|1.6217177842063415|0.3078552159445987|2.4|527.0|1|1|sense;AluY_dup35442|chr6:31180952-31181248:+|1.2318935688957755|0.3455076719651447|1.83|538.0|1|1|sense;ENST00000355468.7_2_17:39959004-39959106:-|nuORF;chr7:102637633-102638394|197|18.35|0.0|20.81|-|0|TE_info:AluSx,AluSx_dup45917,Alu,SINE,donor,-,102638394,102638462|UPK3BL1,None|1	ENST00000592434.5_2_19:45404483-45404828:+|nuORF	ENST00000592434.5_2_19:45404483-45404828:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.8327026367188	2	540.831852	1079.64915	0.54433	0.00029439	-0.45969	-0.00024862	0.084642	4.5777E-05	540.8325368674184	68.612	2.737	68.612	68.226	70.963	0					296	99	6	0	0	0	0.20626	2	17270	17270;17321		22.736	1.1993	1	81383000			54498	9787	31183	31184	66783;66784	66783					0.11251202990592901
VRWLTPVIP	9	Unmodified	_VRWLTPVIP_					0	0	0		ENST00000592434.5_2_19:45404483-45404828:+|nuORF;ENST00000369980.7_2_X:153276741-153276987:-|nuORF;ENST00000489142.5_1_10:114207101-114244859:+|nuORF;ENST00000397006.2_1_5:40777312-40798264:-|nuORF;ENST00000251527.9_1_7:158524237-158524429:-|nuORF;ENST00000513246.5_3_5:179131225-179131366:+|nuORF;AluJb_dup51699|chr7:128460708-128461000:-|1.6217177842063415|0.3078552159445987|2.4|527.0|1|1|sense;AluY_dup35442|chr6:31180952-31181248:+|1.2318935688957755|0.3455076719651447|1.83|538.0|1|1|sense;ENST00000355468.7_2_17:39959004-39959106:-|nuORF;chr7:102637633-102638394|197|18.35|0.0|20.81|-|0|TE_info:AluSx,AluSx_dup45917,Alu,SINE,donor,-,102638394,102638462|UPK3BL1,None|1	ENST00000592434.5_2_19:45404483-45404828:+|nuORF	ENST00000592434.5_2_19:45404483-45404828:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8328247070312	2	540.831852	1079.64915	0.46712	0.00025263	-0.49331	-0.0002668	-0.026195	-1.4167E-05	540.8325338539388	68.534	2.4612	68.606	68.24	70.701	0.071938					290	88	6	0	0	0	0.20626	1	17293	17293		22.736	2.2827	1	80195000			54499	9787	31183	31184	66785	66785					0.11251202990592901
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		ENSG00000136270|ENST00000258770|TBRG4;nc|ENSG00000136270|Q969Z0-2|TBRG4	ENSG00000136270|ENST00000258770|TBRG4	ENSG00000136270|ENST00000258770|TBRG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.9854125976562	3	521.985407	1562.93439	0.19514	0.00010186	-0.12509	-6.5296E-05	0.070053	3.6567E-05	521.9853748435054	96.305	2.0932	96.305	95.368	97.461	0					641	205	4	0	0	0	0.48212	2	25676	25676;25715		0.45452	0.45452	1	797060			54500	3964	31184	31185	66786;66787	66786					0.17544099852352701
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		ENSG00000136270|ENST00000258770|TBRG4;nc|ENSG00000136270|Q969Z0-2|TBRG4	ENSG00000136270|ENST00000258770|TBRG4	ENSG00000136270|ENST00000258770|TBRG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.80224609375	3	521.985407	1562.93439	0.28871	0.0001507	-0.4738	-0.00024732	-0.18509	-9.6617E-05	521.985244052065	94.571	1.0568	94.571	94.018	95.075	0					271	94	4	0	0	0	0.33352	1	25240	25240		0.08335	0.08335	1	421510			54501	3964	31184	31185	66788	66788					0.17544099852352701
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		ENSG00000136270|ENST00000258770|TBRG4;nc|ENSG00000136270|Q969Z0-2|TBRG4	ENSG00000136270|ENST00000258770|TBRG4	ENSG00000136270|ENST00000258770|TBRG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.9855346679688	3	521.985407	1562.93439	0.2762	0.00014417	-0.088229	-4.6054E-05	0.18797	9.8119E-05	521.9853413655566	96.013	1.8312	96.091	95.402	97.233	0.077415					462	168	4	0	0	0	0.47545	7	25633	25590;25633;25671;25707;25743;25778;25812		1.3296	1.3296	1	1687600			54502	3964	31184	31185	66789;66790;66791;66792;66793;66794;66795	66790					0.17544099852352701
VRWSVWKE	8	Unmodified	_VRWSVWKE_					0	0	0		ENST00000499732.2_1_11:65190584-65190623:+|nuORF	ENST00000499732.2_1_11:65190584-65190623:+|nuORF	ENST00000499732.2_1_11:65190584-65190623:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.311767578125	2	545.295633	1088.57671	0.44312	0.00024163	-0.43646	-0.000238	0.0066646	3.6342E-06	545.2953646479452	15.92	0.69111	15.857	15.607	16.298	-0.062533					42	23	2	0	0	0	0.34353	1	1129	1129		4.756	0	1	109970			54503	11263	31185	31186	66796	66796					0.03596868917043139
VSAAAAVRVR	10	Unmodified	_VSAAAAVRVR_					0	0	0			REV__ENSG00000091138|ENST00000340010|SLC26A3	REV__ENSG00000091138|ENST00000340010|SLC26A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.2954406738281	2	500.306532	998.598512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.173	1	33.173	32.673	33.673	0								0	0	0	0.33945	1	6405	6405		19.257	0	1		+		54504	14060	31186	31187	66797	66797					0.09915673665602753
VSAADKPTK	9	Unmodified	_VSAADKPTK_					0	0	0			REV__ENSG00000010017|ENST00000011619|RANBP9	REV__ENSG00000010017|ENST00000011619|RANBP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.2507019042969	2	458.758549	915.502546	-0.14656	-6.7234E-05	0.091667	4.2053E-05	-0.054889	-2.5181E-05	458.7585559023915	23.066	0.85387	23.066	22.815	23.669	0					58	29	3	0	0	0	0.24289	1	3374	3374		18.146	4.2403	1	165990	+		54505	13411	31187	31188	66798	66798					0.041414810348555875
VSADLANLLK	10	Unmodified	_VSADLANLLK_					0	0	0		ENSG00000099991|ENST00000263119|CABIN1;nc|ENSG00000099991|Q9Y6J0-2|CABIN1;CABIN1|p.I1015Lfs*44|1|0.05|ENSG00000099991|chr22:24084710-24084711|-/TTGAAAAAAAG|frameshift_variant	ENSG00000099991|ENST00000263119|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.3084106445312	2	522.308406	1042.60226	0.50586	0.00026421	-0.49717	-0.00025967	0.0086904	4.539E-06	522.3081588907738	58.77	0.5759	58.77	58.531	59.107	0					43	19	3	0	0	0	0.0034473	1	14277	14277		100.71	53.114	1	583730			54506	1509	31188	31189	66799	66799					0.0826629864880033
VSADLANLLK	10	Unmodified	_VSADLANLLK_					0	0	0		ENSG00000099991|ENST00000263119|CABIN1;nc|ENSG00000099991|Q9Y6J0-2|CABIN1;CABIN1|p.I1015Lfs*44|1|0.05|ENSG00000099991|chr22:24084710-24084711|-/TTGAAAAAAAG|frameshift_variant	ENSG00000099991|ENST00000263119|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.3085327148438	2	522.308406	1042.60226	0.47487	0.00024803	-0.2561	-0.00013376	0.21877	0.00011426	522.3081870242249	58.619	0.5131	58.71	58.502	59.015	0.091305					42	17	3	0	0	0	0.0034473	1	14230	14230		100.71	42.987	1	558710			54507	1509	31188	31189	66800	66800					0.0826629864880033
VSADLANLLK	10	Unmodified	_VSADLANLLK_					0	0	0		ENSG00000099991|ENST00000263119|CABIN1;nc|ENSG00000099991|Q9Y6J0-2|CABIN1;CABIN1|p.I1015Lfs*44|1|0.05|ENSG00000099991|chr22:24084710-24084711|-/TTGAAAAAAAG|frameshift_variant	ENSG00000099991|ENST00000263119|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.308406	1042.60226	0.53915	0.0002816	-0.60346	-0.00031519	-0.064311	-3.359E-05	522.3081902335482	58.795	0.5315	58.781	58.553	59.084	-0.014267	0.027146	-0.0001794	NaN	100.71	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	635860			54508	1509	31188	31189							0.0826629864880033
VSAENILTV	9	Unmodified	_VSAENILTV_					0	0	0		ENST00000541569.5_1_12:102419750-102455740:-|nuORF;ENSG00000120860|ENST00000240079|WASHC3	ENST00000541569.5_1_12:102419750-102455740:-|nuORF	ENST00000541569.5_1_12:102419750-102455740:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7896728515625	2	473.266207	944.517862	0.17129	8.1067E-05	0.60391	0.00028581	0.77521	0.00036688	473.26636736603575	62.659	0.47972	62.659	62.45	62.93	0					35	17	3	0	0	0	0.19686	1	15509	15509		31.268	7.2478	1	344760			54509	2969	31189	31190	66801	66801					0.043383478320379254
VSAENILTV	9	Unmodified	_VSAENILTV_					0	0	0		ENST00000541569.5_1_12:102419750-102455740:-|nuORF;ENSG00000120860|ENST00000240079|WASHC3	ENST00000541569.5_1_12:102419750-102455740:-|nuORF	ENST00000541569.5_1_12:102419750-102455740:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7898254394531	2	473.266207	944.517862	0.2933	0.00013881	0.11915	5.639E-05	0.41245	0.0001952	473.26615955403605	62.6	0.43955	62.697	62.442	62.881	0.096985					28	15	2	0	0	0	0.20381	1	15453	15453		23.79	6.8475	1	348740			54510	2969	31189	31190	66802	66802					0.043383478320379254
VSAEVTAWRKP	11	Unmodified	_VSAEVTAWRKP_					0	0	0		ENST00000445427.1_1_10:6626045-6626114:+|nuORF	ENST00000445427.1_1_10:6626045-6626114:+|nuORF	ENST00000445427.1_1_10:6626045-6626114:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3438110351562	2	622.343312	1242.67207	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.27	1	106.27	105.77	106.77	0								0	0	0	0.37382	1	28093	28093		2.9952	0.26005	1				54511	10586	31190	31191	66803	66803					0.0604417731740341
VSAGVVSASPP	11	Unmodified	_VSAGVVSASPP_					0	0	0			REV__nc|ENSG00000162775|Q96T37-4|RBM15	REV__nc|ENSG00000162775|Q96T37-4|RBM15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.7638854980469	2	485.763832	969.513111	0.068743	3.3393E-05	0.11305	5.4917E-05	0.1818	8.831E-05	485.76381236834834	23.555	0.74908	23.555	23.224	23.973	0					58	25	3	0	0	0	0.36257	1	3516	3516		16.149	1.7437	1	610290	+		54512	17008	31191	31192	66804	66804					0.027134636892810704
VSAHCNISL	9	Unmodified	_VSAHCNISL_					0	0	0		ENST00000487045.6_1_16:31191511-31194161:+|nuORF	ENST00000487045.6_1_16:31191511-31194161:+|nuORF	ENST00000487045.6_1_16:31191511-31194161:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.7978820800781	2	472.236927	942.459301	-0.15256	-7.2042E-05	-0.080744	-3.813E-05	-0.2333	-0.00011017	472.23692312973634	25.516	0.72871	25.484	24.922	25.65	-0.031408					40	25	2	0	0	0	0.2322	1	4032	4032		20.454	2.3186	1	34847			54513	11112	31192	31193	66805	66805					-0.014230320140768526
VSAHLKEQS	9	Unmodified	_VSAHLKEQS_					0	0	0		ENST00000448467.1_1_22:30939341-30940067:+|nuORF	ENST00000448467.1_1_22:30939341-30940067:+|nuORF	ENST00000448467.1_1_22:30939341-30940067:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7581481933594	2	499.766906	997.519259	0.36937	0.0001846	0.46004	0.00022991	0.82941	0.00041451	499.76703308444917	29.034	0.58703	29.047	28.802	29.389	0.012266					51	20	3	0	0	0	0.18803	1	5104	5104		25.399	2.663	1	602630			54514	10619	31193	31194	66806	66806					0.020399819208023473
VSAICCDLL	9	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))VSAIC(Carbamidomethyl (C))CDLL_	VSAIC(0.808)C(0.192)DLL		VSAIC(6.2)C(-6.2)DLL		1	1	0		ENST00000529460.1_1_11:118272432-118277706:+|nuORF	ENST00000529460.1_1_11:118272432-118277706:+|nuORF	ENST00000529460.1_1_11:118272432-118277706:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2463989257812	2	518.246103	1034.47765	0.2521	0.00013065	0.27629	0.00014319	0.52839	0.00027384	518.2465869402477	61.39	2.3532	61.39	60.764	63.117	0					260	87	5	0	0	0	0.051692	1	14920	14920		52.268	8.4101	2	29650000			54515	11600	31194	31195	66807	66807	17				-0.038206581543818174
VSAICCDLL	9	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))VSAIC(Carbamidomethyl (C))CDLL_	VSAIC(0.82)C(0.18)DLL		VSAIC(6.6)C(-6.6)DLL		1	1	0		ENST00000529460.1_1_11:118272432-118277706:+|nuORF	ENST00000529460.1_1_11:118272432-118277706:+|nuORF	ENST00000529460.1_1_11:118272432-118277706:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2462158203125	2	518.246103	1034.47765	0.11178	5.7932E-05	0.3998	0.00020719	0.51158	0.00026513	518.2466149611879	61.268	2.3159	61.365	60.752	63.068	0.096985					249	84	5	0	0	0	0.027237	1	14897	14897		61.357	11.424	2	31549000			54516	11600	31194	31195	66808	66808	17				-0.038206581543818174
VSAIWKELIS	10	Unmodified	_VSAIWKELIS_					0	0	0		nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.2850952148438	2	573.331882	1144.64921	-0.025662	-1.4713E-05	0.18677	0.00010708	0.1611	9.2366E-05	573.3319251689728	61.943	0.49979	62.04	61.701	62.2	0.096985					30	17	2	0	0	0	0.31838	1	15185	15185		7.609	0	1	175070			54517	1153	31195	31196	66809	66809					0.0826715819994206
VSAKLNDLS	9	Unmodified	_VSAKLNDLS_					0	0	0			REV__ENSG00000136026|ENST00000378026|CKAP4	REV__ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.7497863769531	2	473.763832	945.513111	0.23419	0.00011095	-0.19292	-9.1398E-05	0.041274	1.9554E-05	473.76375625104026	23.366	1.0427	23.321	23.06	24.103	-0.044867					73	36	4	0	0	0	0.22188	1	3442	3442		20.454	0	1	444280	+		54518	15782	31196	31197	66810	66810					0.03817463689279066
VSALERQIF	9	Unmodified	_VSALERQIF_					0	0	0		ENST00000523367.1_1_8:63161359-63775831:+|nuORF;nc|ENSG00000185942|Q8N8D7|NKAIN3;ENST00000519049.5_1_8:63161632-63877963:+|nuORF;ENSG00000185942|ENST00000623646|NKAIN3	ENST00000523367.1_1_8:63161359-63775831:+|nuORF	ENST00000523367.1_1_8:63161359-63775831:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2907104492188	2	531.800749	1061.58694	0.36567	0.00019446	1.6563	0.0008808	2.0219	0.0010753	531.8018618165307	43.831	0.36401	43.908	43.71	44.074	0.077515					21	13	2	0	0	0	0.25526	1	9697	9697		7.9102	3.5809	1	334600			54519	11509	31197	31198	66811	66811					0.058614318515992636
VSALGSVSAVK	11	Unmodified	_VSALGSVSAVK_					0	0	0			REV__ENSG00000115297|ENST00000233638|TLX2	REV__ENSG00000115297|ENST00000233638|TLX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7546081542969	2	509.300581	1016.58661	0.43814	0.00022315	-1.7231	-0.00087759	-1.285	-0.00065445	509.30028193131994	20.28	0.87321	20.17	19.735	20.609	-0.11003					53	31	3	0	0	0	0.32996	1	2592	2592		8.1555	3.2585	1	222670	+		54520	14872	31198	31199	66812	66812					0.07898012131761334
VSALLWGW	8	Unmodified	_VSALLWGW_					0	0	0		ENST00000531976.1_1_11:1490730-1491405:-|nuORF	ENST00000531976.1_1_11:1490730-1491405:-|nuORF	ENST00000531976.1_1_11:1490730-1491405:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2646789550781	2	466.255446	930.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.274	1	94.272	93.772	94.772	-0.0020142								0	0	0	0.36961	1	25139	25139		5.7604	0	1				54521	11631	31199	31200	66813	66813					0.028310075939884882
VSALRFKP	8	Unmodified	_VSALRFKP_					0	0	0			REV__ENST00000305124.10_1_3:115394869-115394968:+|nuORF	REV__ENST00000305124.10_1_3:115394869-115394968:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7584228515625	2	459.281995	916.549437	-0.011585	-5.3208E-06	-0.53869	-0.00024741	-0.55027	-0.00025273	459.2813798053185	22.189	0.16624	22.14	22.038	22.204	-0.049377					6	5	2	0	0	0	0.34408	1	3074	3074		2.3027	0	1	10423	+		54522	19848	31200	31201	66814	66814					0.08782385376650836
VSALRFKP	8	Unmodified	_VSALRFKP_					0	0	0			REV__ENST00000305124.10_1_3:115394869-115394968:+|nuORF	REV__ENST00000305124.10_1_3:115394869-115394968:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	459.281995	916.549437	0.13513	6.2062E-05	-0.11825	-5.4308E-05	0.016882	7.7538E-06	459.2818048907235	21.912	0.1442	21.811	21.716	21.86	-0.10034	-0.16414	5.9871E-05	NaN	2.3027	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36486	+		54523	19848	31200	31201							0.08782385376650836
VSAPGCTIVRY	11	Unmodified	_VSAPGCTIVRY_					0	0	0			REV__ENST00000219281.7_1_16:58055025-58055211:+|nuORF	REV__ENST00000219281.7_1_16:58055025-58055211:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3059692382812	2	583.305341	1164.59613	0.32899	0.0001919	0.64013	0.00037339	0.96912	0.0005653	583.3058525188594	73.021	1.1252	73.021	72.613	73.738	0					108	40	4	0	0	0	0.36943	1	18624	18624		15.248	1.3424	1	698060	+		54524	19418	31201	31202	66815	66815					0.02041457145651293
VSAPGCTIVRY	11	Unmodified	_VSAPGCTIVRY_					0	0	0			REV__ENST00000219281.7_1_16:58055025-58055211:+|nuORF	REV__ENST00000219281.7_1_16:58055025-58055211:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3060913085938	2	583.305341	1164.59613	0.42447	0.0002476	0.96675	0.00056391	1.3912	0.00081151	583.3057615383146	73.082	1.1433	73.052	72.627	73.77	-0.029297					90	41	3	0	0	0	0.36943	1	18593	18593		15.248	1.3424	1	568450	+		54525	19418	31201	31202	66816	66816					0.02041457145651293
VSAQCIWLFP	10	Unmodified	_VSAQCIWLFP_					0	0	0			REV__ENST00000575310.1_1_17:7346921-7347071:+|nuORF	REV__ENST00000575310.1_1_17:7346921-7347071:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.2988891601562	2	582.299527	1162.5845	0.27601	0.00016072	-1.3098	-0.00076267	-1.0337	-0.00060195	582.2988277398578	19.698	0.49339	19.582	19.375	19.869	-0.11592					25	16	2	0	0	0	0.40992	1	2351	2351		1.6526	0.17072	1	103020	+		54526	22442	31202	31203	66817	66817					0.009712601222872763
VSARFIPL	8	Unmodified	_VSARFIPL_					0	0	0			REV__ENSG00000039139|ENST00000265104|DNAH5	REV__ENSG00000039139|ENST00000265104|DNAH5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.7635803222656	2	451.776545	901.538538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.33	1	71.39	70.89	71.89	0.060783								0	0	0	0.34229	1	18118	18118		18.135	1.1927	1		+		54527	13520	31203	31204	66818	66818					0.08382983002377387
VSARKLDR	8	Unmodified	_VSARKLDR_					0	0	0			REV__ENST00000413292.1_1_11:64685074-64685764:+|nuORF	REV__ENST00000413292.1_1_11:64685074-64685764:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7979736328125	2	472.785433	943.556313	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.328	1	25.328	24.828	25.828	0								0	0	0	0.35663	1	4019	4019		11.64	0	1		+		54528	20789	31204	31205	66819	66819					0.08227698257223892
VSARRRAR	8	Unmodified	_VSARRRAR_					0	0	0			REV__ENST00000327111.7_1_5:92919776-92920418:+|nuORF	REV__ENST00000327111.7_1_5:92919776-92920418:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.9289245605469	2	486.302116	970.589679	0.14416	7.0105E-05	2.7085	0.0013172	2.8527	0.0013873	486.303680015607	24.101	0.36265	24.101	23.857	24.22	0					20	12	2	0	0	0	0.34337	1	3588	3588		5.2307	0.47466	1	49919	+		54529	20007	31205	31206	66820	66820					0.10320744819796346
VSARRRAR	8	Unmodified	_VSARRRAR_					0	0	0			REV__ENST00000327111.7_1_5:92919776-92920418:+|nuORF	REV__ENST00000327111.7_1_5:92919776-92920418:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	486.302116	970.589679	0.24074	0.00011707	2.7067	0.0013163	2.9474	0.0014333	486.3034837730504	24.186	0.39219	24.114	23.935	24.327	-0.072559	0.0038462	-0.00017274	NaN	5.2307	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55313	+		54530	20007	31205	31206							0.10320744819796346
VSARRRAR	8	Unmodified	_VSARRRAR_					0	0	0			REV__ENST00000327111.7_1_5:92919776-92920418:+|nuORF	REV__ENST00000327111.7_1_5:92919776-92920418:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	486.302116	970.589679	0.27682	0.00013462	3.2295	0.0015705	3.5064	0.0017052	486.30365079294046	24.154	0.36767	24.115	23.939	24.306	-0.038927	0.0048525	0.00033583	NaN	5.2307	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60825	+		54531	20007	31205	31206							0.10320744819796346
VSASALGAASL	11	Unmodified	_VSASALGAASL_					0	0	0			REV__ENST00000344079.9_2_10:134145687-134147072:+|nuORF	REV__ENST00000344079.9_2_10:134145687-134147072:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7638244628906	2	473.763832	945.513111	0.049346	2.3379E-05	0.13224	6.2649E-05	0.18158	8.6027E-05	473.7638278548894	26.931	0.91574	26.931	26.673	27.589	0					73	31	4	0	0	0	0.069	1	4522	4522		47.749	0.016709	1	929440	+		54532	20136	31206	31207	66821	66821					0.03817463689279066
VSASALLSPS	10	Unmodified	_VSASALLSPS_					0	0	0			REV__ENST00000448553.5_1_15:44087200-44089477:-|nuORF	REV__ENST00000448553.5_1_15:44087200-44089477:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2578430175781	2	466.258382	930.502212	-0.24212	-0.00011289	-0.10927	-5.095E-05	-0.35139	-0.00016384	466.25830770640505	25.579	1.2716	25.523	24.946	26.218	-0.055931					108	44	4	0	0	0	0.1715	1	4197	4197		36.127	1.7253	1	2280200	+		54533	21096	31207	31208	66822	66822					0.03418061315016985
VSASASLTIF	10	Unmodified	_VSASASLTIF_					0	0	0		ENSG00000161638|ENST00000293379|ITGA5;ENST00000552564.5_1_12:54797354-54798257:-|nuORF	ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.26708984375	2	498.274032	994.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.369	1	17.369	16.869	17.869	0								0	0	0	0.3629	1	1609	1609		9.3831	0	1				54534	5521	31208	31209	66823	66823					0.03602634349101663
VSASGRGVRR	10	Unmodified	_VSASGRGVRR_					0	0	0		ENST00000565886.1_1_19:7981754-7982422:+|nuORF	ENST00000565886.1_1_19:7981754-7982422:+|nuORF	ENST00000565886.1_1_19:7981754-7982422:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2861328125	2	522.804688	1043.59482	0.5552	0.00029026	0.15654	8.184E-05	0.71174	0.0003721	523.3055314340563	30.268	0.46477	30.268	30.088	30.553	0					37	16	3	0	0	0	0.31691	1	5549	5549		9.3831	0	1	128340			54535	11973	31209	31210	66824	66824					0.07477003891767708
VSASIQRIR	9	Unmodified	_VSASIQRIR_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.3117065429688	2	515.311815	1028.60908	0.034752	1.7908E-05	-0.29111	-0.00015001	-0.25636	-0.00013211	515.3115475858481	15.026	0.53657	15.026	14.845	15.382	0					36	18	3	0	0	0	0.12642	1	899	899		34.402	1.616	1	474000			54536	2461	31210	31211	66825	66825					0.09591656320026232
VSASIQRIR	9	Unmodified	_VSASIQRIR_					0	0	0		nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	515.311815	1028.60908	0.031627	1.6298E-05	-0.25352	-0.00013064	-0.22189	-0.00011434	515.3115729767983	15.148	0.56041	15.039	14.847	15.408	-0.10981	-0.027066	3.1936E-05	NaN	34.402	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323610			54537	2461	31210	31211							0.09591656320026232
VSATLIRRAP	10	Unmodified	_VSATLIRRAP_					0	0	0			REV__ENST00000382264.7_1_21:34602403-34614216:+|nuORF	REV__ENST00000382264.7_1_21:34602403-34614216:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.2444458007812	2	542.33529	1082.65603	0.14725	7.986E-05	-1.2657	-0.00068643	-1.1184	-0.00060657	542.3350850316672	13.684	0.25517	13.684	13.567	13.822	0					13	8	2	0	0	0	0.32033	1	517	517		3.5965	0	1	22792	+		54538	20570	31211	31212	66826	66826					0.11800515871163952
VSAVAPSDPIG	11	Unmodified	_VSAVAPSDPIG_					0	0	0		ENST00000324685.10_1_16:30786705-30787371:+|nuORF	ENST00000324685.10_1_16:30786705-30787371:+|nuORF	ENST00000324685.10_1_16:30786705-30787371:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7573547363281	2	506.769114	1011.52368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.044	1	14.98	14.48	15.48	-0.064413								0	0	0	0.36335	1	907	907		5.2969	0.96765	1				54539	9404	31212	31213	66827	66827					0.018374463437112354
VSAVATSHLN	10	Unmodified	_VSAVATSHLN_					0	0	0			REV__nc|ENSG00000172148|Q8NGA2|OR7A2P	REV__nc|ENSG00000172148|Q8NGA2|OR7A2P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.75836181640625	2	499.766906	997.519259	0.52167	0.00026071	0.20645	0.00010318	0.72811	0.00036389	499.76693605880496	29.093	0.62346	29.093	28.817	29.441	0					50	22	3	0	0	0	0.16839	1	5117	5117		36.506	3.7205	1	468200	+		54540	23085	31213	31214	66828	66828					0.02039981920813716
VSAVATSHLN	10	Unmodified	_VSAVATSHLN_					0	0	0			REV__nc|ENSG00000172148|Q8NGA2|OR7A2P	REV__nc|ENSG00000172148|Q8NGA2|OR7A2P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8034973144531	2	499.766906	997.519259	0.52167	0.00026071	0.20645	0.00010318	0.72811	0.00036389	499.76693605880496	29.093	0.62346	29.093	28.817	29.441	0					50	22	3	0	0	0	0.2623	1	5182	5182		32.786	0	1	468200	+		54541	23085	31213	31214	66829	66829					0.02039981920813716
VSAYGPGLSH	10	Unmodified	_VSAYGPGLSH_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2471923828125	2	494.248349	986.482145	-0.54253	-0.00026815	0.34633	0.00017117	-0.1962	-9.6971E-05	494.248378269739	34.352	0.99258	34.418	34.149	35.142	0.06636					85	35	5	0	0	0	0.21644	1	6869	6869		30.637	1.555	1	859920			54542	3377	31214	31215	66830	66830					-0.01163689624968356
VSAYGPGLSH	10	Unmodified	_VSAYGPGLSH_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2477722167969	2	494.248349	986.482145	-0.41536	-0.00020529	-0.72293	-0.00035731	-1.1383	-0.0005626	494.2479254427415	34.666	0.5551	34.744	34.561	35.116	0.077377					33	19	2	0	0	0	0.2811	1	6883	6883		22.736	3.4793	1	405430			54543	3377	31214	31215	66831	66831					-0.01163689624968356
VSCARYFPLT	10	Unmodified	_VSCARYFPLT_					0	0	0			REV__ENST00000541059.5_1_11:67232701-67234745:-|nuORF	REV__ENST00000541059.5_1_11:67232701-67234745:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.779541015625	2	578.794609	1155.57467	0.38629	0.00022358	-1.3743	-0.00079545	-0.98804	-0.00057187	578.7938176417764	65.928	0.58655	65.916	65.693	66.28	-0.012146					29	20	2	0	0	0	0.34795	1	16448	16448		13.042	0	1	328390	+		54544	22124	31215	31216	66832	66832					0.0031007211689484393
VSCFHVKS	8	Unmodified	_VSCFHVKS_					0	0	0			REV__ENSG00000138771|ENST00000296043|SHROOM3	REV__ENSG00000138771|ENST00000296043|SHROOM3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7480163574219	2	453.728738	905.442923	-0.078657	-3.5689E-05	2.2848	0.0010367	2.2061	0.001001	453.7296898886278	15.595	0.3976	15.595	15.445	15.842	0					17	13	2	0	0	0	0.34167	1	1130	1130		11.64	3.047	1	25134	+		54545	15956	31216	31217	66833	66833					-0.013581131801629454
VSCRLLLL	8	Unmodified	_VSCRLLLL_					0	0	0		ENST00000506113.5_1_5:148521318-148521456:+|nuORF	ENST00000506113.5_1_5:148521318-148521456:+|nuORF	ENST00000506113.5_1_5:148521318-148521456:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7861328125	2	458.786056	915.557558	-0.27331	-0.00012539	0.45552	0.00020899	0.18221	8.3595E-05	458.7861267565334	12.629	0.44172	12.562	12.463	12.905	-0.067496					26	14	3	0	0	0	0.46692	1	195	195		0	0	1	324880			54546	11322	31217	31218	66834	66834					0.09640196301791093
VSCVKMLVLLL	11	Unmodified	_VSCVKMLVLLL_					0	0	0			REV__ENST00000595295.1_1_19:58369960-58370206:-|nuORF	REV__ENST00000595295.1_1_19:58369960-58370206:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.8962097167969	3	406.583517	1216.72872	0.096396	3.9193E-05	0.06915	2.8115E-05	0.16555	6.7309E-05	406.584433621751	36.332	0.41695	36.415	36.284	36.701	0.082359					24	14	2	0	0	0	0.3322	1	7435	7435		4.7159	0.83959	1	73584	+		54547	22594	31218	31219	66835	66835					0.12902765558101237
VSCVPTIKLWC	11	Unmodified	_VSCVPTIKLWC_					0	0	0			REV__ENST00000468437.1_1_1:84972553-84972652:+|nuORF	REV__ENST00000468437.1_1_1:84972553-84972652:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.90301513671875	3	416.887489	1247.64064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.882	1	19.882	19.382	20.382	0								0	0	0	0.36335	1	2368	2368		2.4348	0.18206	1		+		54548	21327	31219	31220	66836	66836					0.026721449674596442
VSDHWGDHVAV	11	Unmodified	_VSDHWGDHVAV_					0	0	0			REV__ENST00000529510.5_1_11:118896689-118898934:-|nuORF	REV__ENST00000529510.5_1_11:118896689-118898934:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.55633544921875	3	407.859755	1220.55744	-0.031436	-1.2821E-05	0.3826	0.00015605	0.35116	0.00014322	408.1939976728479	21.588	0.765	21.588	21.08	21.845	0					64	26	3	0	0	0	0.33255	1	2841	2841		2.6312	1.6177	1	136140	+		54549	21939	31220	31221	66837	66837					-0.04402132164523209
VSDHWGDHVAV	11	Unmodified	_VSDHWGDHVAV_					0	0	0			REV__ENST00000529510.5_1_11:118896689-118898934:-|nuORF	REV__ENST00000529510.5_1_11:118896689-118898934:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.5565490722656	3	407.859755	1220.55744	0.0333	1.3582E-05	0.34919	0.00014242	0.38249	0.000156	408.194021888709	21.597	0.8133	21.548	21.092	21.905	-0.049377					63	28	3	0	0	0	0.33255	1	2874	2874		1.2148	0.20126	1	156470	+		54550	21939	31220	31221	66838	66838					-0.04402132164523209
VSDISGKVK	9	Unmodified	_VSDISGKVK_					0	0	0		nc|ENSG00000149527|O75038-5|PLCH2;ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;nc|ENSG00000149527|O75038-4|PLCH2;ENST00000462379.1_1_1:2430086-2435063:+|nuORF;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2	nc|ENSG00000149527|O75038-5|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2	nc|ENSG00000149527|O75038-5|PLCH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2821350097656	2	466.7742	931.533846	-0.15194	-7.0922E-05	0.03128	1.4601E-05	-0.12066	-5.6322E-05	466.77418643869515	17.282	0.55205	17.164	16.937	17.489	-0.11739					33	19	2	0	0	0	0.25527	1	1635	1635		8.7454	1.4562	1	111880			54551	9550;4872	31221	31222	66839	66839					0.06534054068958994
VSDLSFPV	8	Unmodified	_VSDLSFPV_					0	0	0			REV__ENSG00000182220|ENST00000636580|ATP6AP2	REV__ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.2295227050781	2	432.229094	862.443634	-0.10643	-4.6003E-05	0.93048	0.00040218	0.82405	0.00035618	432.2295353758197	67.401	0.91608	67.401	67.106	68.022	0					55	31	3	0	0	0	0.30517	1	16956	16956		30.225	0	1	699980	+		54552	18184	31222	31223	66840	66840					0.006910047405199293
VSDLTEPR	8	Unmodified	_VSDLTEPR_					0	0	0			REV__ENSG00000108830|ENST00000587250|RND2	REV__ENSG00000108830|ENST00000587250|RND2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7401428222656	2	458.740357	915.46616	-0.094705	-4.3445E-05	0.94274	0.00043247	0.84804	0.00038903	458.7404495966061	16.141	0.91919	16.026	15.748	16.667	-0.11434					76	31	5	0	0	0	0.44569	1	1371	1371		7.2892	0	1	361130	+		54553	14610	31223	31224	66841	66841					0.005046041381433497
VSDPSSPQYGK	11	Unmodified	_VSDPSSPQYGK_					0	0	0		ENST00000428886.6_1_11:6638445-6640631:-|nuORF;ENSG00000166340|ENST00000299427|TPP1	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.7802124023438	2	582.78021	1163.54587	0.094986	5.5356E-05	0.82694	0.00048192	0.92192	0.00053728	582.7807296965256	22.67	0.54337	22.67	22.36	22.904	0					50	18	3	0	0	0	0.055109	1	3208	3208		51.765	30.175	1	389110			54554	6062	31224	31225	66842	66842					-0.029363739785139842
VSDPSSPQYGK	11	Unmodified	_VSDPSSPQYGK_					0	0	0		ENST00000428886.6_1_11:6638445-6640631:-|nuORF;ENSG00000166340|ENST00000299427|TPP1	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.7811279296875	2	582.78021	1163.54587	0.06219	3.6243E-05	0.81508	0.00047501	0.87727	0.00051126	582.7806791128269	22.84	0.53372	22.753	22.403	22.937	-0.087608					53	18	4	0	0	0	0.048078	1	3288	3288		53.798	26.575	1	405000			54555	6062	31224	31225	66843	66843					-0.029363739785139842
VSDPSSPQYGK	11	Unmodified	_VSDPSSPQYGK_					0	0	0		ENST00000428886.6_1_11:6638445-6640631:-|nuORF;ENSG00000166340|ENST00000299427|TPP1	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	ENST00000428886.6_1_11:6638445-6640631:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.781005859375	2	582.78021	1163.54587	0.18382	0.00010713	0.89448	0.00052128	1.0783	0.00062841	582.7806775049611	22.871	0.62471	22.826	22.409	23.033	-0.044867					63	21	4	0	0	0	0.12586	1	3287	3287		72.59	44.095	1	416240			54556	6062	31224	31225	66844	66844					-0.029363739785139842
VSDRIHRQ	8	Unmodified	_VSDRIHRQ_					0	0	0			REV__ENSG00000142552|ENST00000270645|RCN3	REV__ENSG00000142552|ENST00000270645|RCN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.31341552734375	2	505.778139	1009.54173	0.28448	0.00014389	-0.45192	-0.00022857	-0.16743	-8.4684E-05	506.27912279679333	67.919	0.47777	67.902	67.593	68.071	-0.016304					36	16	3	0	0	0	0.34247	1	17072	17072		8.5933	0	1	223860	+		54557	16125	31225	31226	66845	66845					0.03733626109078614
VSDRLVKQA	9	Unmodified	_VSDRLVKQA_					0	0	0			REV__ENSG00000130173|ENST00000252453|ANGPTL8	REV__ENSG00000130173|ENST00000252453|ANGPTL8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2986145019531	2	508.298373	1014.58219	-0.15922	-8.0929E-05	0.32519	0.00016529	0.16597	8.4364E-05	508.29871395158546	12.602	0.20603	12.535	12.434	12.64	-0.067496					10	6	2	0	0	0	0.25988	1	199	199		3.9444	1.3669	1	65896	+		54558	15441	31226	31227	66846	66846					0.07548547708847764
VSDRSVEKV	9	Unmodified	_VSDRSVEKV_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.29766845703125	2	509.780013	1017.54547	0.48616	0.00024784	0.80786	0.00041183	1.294	0.00065966	509.78039294524405	39.996	0.83724	40.089	39.83	40.667	0.09267					62	29	3	0	0	0	0.24688	1	8643	8643		10.074	0	1	678570	+		54559	16705;23038	31227	31228	66847	66847					0.037402510922902366
VSDSEIAVWEK	11	Unmodified	_VSDSEIAVWEK_					0	0	0			REV__ENSG00000150656|ENST00000358821|CNDP1	REV__ENSG00000150656|ENST00000358821|CNDP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2564392089844	3	421.546954	1261.61903	-0.19263	-8.1202E-05	2.6455	0.0011152	2.4529	0.001034	421.54753653139977	16.354	0.58275	16.24	15.921	16.503	-0.11434					43	19	3	0	0	0	0.32683	1	1262	1262		15.538	10.136	1	59803	+		54560	16505	31228	31229	66848	66848					-0.0013124525589773839
VSDTLLLTW	9	Unmodified	_VSDTLLLTW_					0	0	0		nc|ENSG00000077238|P24394-2|IL4R;nc|ENSG00000077238|P24394-3|IL4R;ENSG00000077238|ENST00000395762|IL4R	nc|ENSG00000077238|P24394-2|IL4R	nc|ENSG00000077238|P24394-2|IL4R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.8294067382812	2	524.289682	1046.56481	0.27163	0.00014241	-3.5776	-0.0018757	-3.306	-0.0017333	524.2878569413626	25.16	0.3155	25.104	24.999	25.314	-0.055931					14	10	2	0	0	0	0.2451	1	3971	3971		15.847	1.2655	1	42988			54561	1083	31229	31230	66849	66849					0.04339207383191024
VSDVAAYMII	10	Unmodified	_VSDVAAYMII_					0	0	0			REV__SCN9A|p.M1532*|1|0.27|ENSG00000169432|chr2:166204135-166204135|T/-|frameshift_variant	REV__SCN9A|p.M1532*|1|0.27|ENSG00000169432|chr2:166204135-166204135|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.322265625	2	541.283543	1080.55253	0.72052	0.00039	0.71577	0.00038743	1.4363	0.00077744	541.2838022908451	54.197	0.68419	54.181	53.865	54.55	-0.015919					40	23	3	0	0	0	0.26638	1	12862	12862		30.637	11.38	1	300780	+		54562	17515	31230	31231	66850	66850					0.015478476484986459
VSDVAAYMII	10	Unmodified	_VSDVAAYMII_					0	0	0			REV__SCN9A|p.M1532*|1|0.27|ENSG00000169432|chr2:166204135-166204135|T/-|frameshift_variant	REV__SCN9A|p.M1532*|1|0.27|ENSG00000169432|chr2:166204135-166204135|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.283543	1080.55253	0.72679	0.0003934	0.37527	0.00020313	1.1021	0.00059653	541.2836315920438	54.056	0.59926	54.056	53.806	54.405	0	-0.051747	-3.242E-07	NaN	30.637	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294940	+		54563	17515	31230	31231							0.015478476484986459
VSDVAAYMII	10	Unmodified	_VSDVAAYMII_					0	0	0			REV__SCN9A|p.M1532*|1|0.27|ENSG00000169432|chr2:166204135-166204135|T/-|frameshift_variant	REV__SCN9A|p.M1532*|1|0.27|ENSG00000169432|chr2:166204135-166204135|T/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	541.283543	1080.55253	0.57113	0.00030914	0.0335	1.8133E-05	0.60463	0.00032728	541.2834364716671	54.023	0.55431	54.086	53.828	54.382	0.063202	-0.021472	-0.00037031	NaN	30.637	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	364780	+		54564	17515	31230	31231							0.015478476484986459
VSDVRFQT	8	Unmodified	_VSDVRFQT_					0	0	0			REV__ENSG00000012232|ENST00000220562|EXTL3	REV__ENSG00000012232|ENST00000220562|EXTL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.2481689453125	2	476.248349	950.482145	-0.1679	-7.996E-05	0.3501	0.00016673	0.1822	8.6773E-05	476.2485191035738	13.02	0.83926	12.953	12.52	13.359	-0.067496					39	28	3	0	0	0	0.45431	1	315	315		4.3292	0	1	69117	+		54565	13440	31231	31232	66851	66851					0.00492310375057059
VSDYEKIRTF	10	Unmodified	_VSDYEKIRTF_					0	0	0		ENST00000464101.2_1_3:132379321-132384968:+|nuORF;UBA5|p.E241Dfs*2|1|0.24|ENSG00000081307|chr3:132672084-132672085|-/TGAT|frameshift_variant;ENSG00000081307|ENST00000356232|UBA5;nc|ENSG00000081307|Q9GZZ9-2|UBA5	ENST00000464101.2_1_3:132379321-132384968:+|nuORF	ENST00000464101.2_1_3:132379321-132384968:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2528381347656	3	419.88731	1256.6401	0.077613	3.2589E-05	1.1675	0.0004902	1.2451	0.00052279	420.22207491915304	37.651	0.53377	37.749	37.503	38.037	0.097527					33	19	3	0	0	0	0.31867	1	7758	7758		2.8433	0	1	198200			54566	1181	31232	31233	66852	66852					0.0220476484360006
VSEDENYVIKL	11	Unmodified	_VSEDENYVIKL_					0	0	0		ZNF233|p.D432Sfs*2|1|0.06|ENSG00000159915|chr19:44273952-44273953|-/CTCA|frameshift_variant;ENSG00000159915|ENST00000683810|ZNF233	ZNF233|p.D432Sfs*2|1|0.06|ENSG00000159915|chr19:44273952-44273953|-/CTCA|frameshift_variant	ZNF233|p.D432Sfs*2|1|0.06|ENSG00000159915|chr19:44273952-44273953|-/CTCA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.8945007324219	3	436.894242	1307.6609	0.058876	2.5723E-05	0.22403	9.7876E-05	0.2829	0.0001236	436.89445879225184	52.001	1.1716	52.052	51.676	52.848	0.050571					120	42	5	0	0	0	0.43198	1	12155	12155		7.0371	0	1	3608800			54567	5428	31233	31234	66853	66853					0.01937310432617778
VSEDENYVMK	10	Unmodified	_VSEDENYVMK_					0	0	0		ZNF233|p.I159M|1|0.33|ENSG00000159915|chr19:44273137-44273137|A/G|missense_variant	ZNF233|p.I159M|1|0.33|ENSG00000159915|chr19:44273137-44273137|A/G|missense_variant	ZNF233|p.I159M|1|0.33|ENSG00000159915|chr19:44273137-44273137|A/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.1853332519531	3	405.185028	1212.53325	0.36427	0.0001476	-0.086152	-3.4907E-05	0.27811	0.00011269	405.1851405965373	36.532	0.6701	36.619	36.334	37.004	0.087112					56	23	3	0	0	0	0.38745	1	7421	7421		5.7834	0	1	424160			54568	23416	31234	31235	66854	66854					-0.06451153433067702
VSELARCSI	9	Unmodified	_VSELARCSI_					0	0	0		ENST00000557787.1_1_15:89164581-89170043:+|nuORF;ENSG00000181026|ENST00000332810|AEN;nc|ENSG00000181026|Q8WTP8-2|AEN	ENST00000557787.1_1_15:89164581-89170043:+|nuORF	ENST00000557787.1_1_15:89164581-89170043:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.8002624511719	2	489.257859	976.501166	0.24676	0.00012073	-2.8058	-0.0013728	-2.559	-0.001252	489.2566670009877	30.93	0.46982	30.93	30.674	31.144	0					24	16	3	0	0	0	0.25988	1	5745	5745		1.6526	0	1	75595			54569	7216	31235	31236	66855	66855					0.011975236744547146
VSELSWLAF	9	Unmodified	_VSELSWLAF_					0	0	0			REV__AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	REV__AHCTF1|p.N2173Tfs*12|1|0.3|ENSG00000153207|chr1:246843829-246843829|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8453979492188	2	526.276575	1050.5386	0.47624	0.00025063	0.53831	0.0002833	1.0145	0.00053393	526.2765378544667	58.997	0.72603	59.088	58.708	59.434	0.091301					55	25	3	0	0	0	0.24913	1	14221	14221		12.532	0.89125	1	530600	+		54570	13091	31236	31237	66856	66856					0.015349382117165078
VSEPRIQF	8	Unmodified	_VSEPRIQF_					0	0	0		ENST00000398844.6_1_5:133984699-133996932:+|nuORF	ENST00000398844.6_1_5:133984699-133996932:+|nuORF	ENST00000398844.6_1_5:133984699-133996932:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.254150390625	2	488.266542	974.51853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.767	1	21.667	21.167	22.167	-0.10034								0	0	0	0.34229	1	2944	2944		18.135	1.1927	1				54571	10172	31237	31238	66857	66857					0.030251872717713013
VSEPRIQF	8	Unmodified	_VSEPRIQF_					0	0	0		ENST00000398844.6_1_5:133984699-133996932:+|nuORF	ENST00000398844.6_1_5:133984699-133996932:+|nuORF	ENST00000398844.6_1_5:133984699-133996932:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2541198730469	2	488.266542	974.51853	0.25263	0.00012335	-1.2441	-0.00060747	-0.99151	-0.00048412	488.2645875302168	21.853	0.50729	21.803	21.373	21.881	-0.049377					22	17	2	0	0	0	0.41097	1	2928	2928		18.135	1.1927	1	54082			54572	10172	31237	31238	66858	66858					0.030251872717713013
VSERHCPCLRL	11	Unmodified	_VSERHCPCLRL_					0	0	0		ENST00000309859.8_1_16:23478376-23478613:-|nuORF	ENST00000309859.8_1_16:23478376-23478613:-|nuORF	ENST00000309859.8_1_16:23478376-23478613:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.247802734375	3	438.225275	1311.65399	-0.093005	-4.0757E-05	-2.819	-0.0012354	-2.9121	-0.0012761	438.2240629799208	24.051	0.65132	24.051	23.569	24.22	0					34	22	2	0	0	0	0.33287	1	3612	3612		2.8433	1.6285	1	61889			54573	9305	31238	31239	66859	66859					0.010633957994059529
VSETSFLPR	9	Unmodified	_VSETSFLPR_					0	0	0		ENST00000484881.5_1_2:74756974-74758788:+|nuORF;ENST00000484352.5_1_2:74757313-74758690:+|nuORF;nc|ENSG00000115317|O43464-4|HTRA2	ENST00000484881.5_1_2:74756974-74758788:+|nuORF	ENST00000484881.5_1_2:74756974-74758788:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.2852783203125	2	518.277106	1034.53966	0.42505	0.00022029	1.2045	0.00062428	1.6296	0.00084458	518.2768630235088	40.194	0.98999	40.293	39.922	40.912	0.099407					102	35	4	0	0	0	0.24581	1	8615	8615		16.942	3.0362	1	2760200			54574	11074	31239	31240	66860	66860					0.023771525806068894
VSEWVWFKF	9	Unmodified	_VSEWVWFKF_					0	0	0			REV__ENSG00000185899|ENST00000332690|TAS2R60	REV__ENSG00000185899|ENST00000332690|TAS2R60	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.9046936035156	3	409.878087	1226.61243	-0.27811	-0.00011399	-0.14415	-5.9084E-05	-0.42226	-0.00017307	409.8779869370794	35.502	0.60302	35.502	35.17	35.773	0					48	21	3	0	0	0	0.24429	1	7172	7172		18.373	18.373	1	372290	+		54575	18416	31240	31241	66861	66861					0.008189063740246638
VSFAHLHFA	9	Unmodified	_VSFAHLHFA_					0	0	0		ENSG00000173250|ENST00000311104|GPR151	ENSG00000173250|ENST00000311104|GPR151	ENSG00000173250|ENST00000311104|GPR151	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3114013671875	2	514.769252	1027.52395	0.030095	1.5492E-05	-0.37418	-0.00019262	-0.34409	-0.00017713	514.7692566755752	15.213	0.5059	15.103	14.93	15.436	-0.10981					20	17	2	0	0	0	0.25879	1	977	977		4.756	0.42677	1	25575			54576	6708	31241	31242	66862	66862					0.011289108542314352
VSFDNKPHSLF	11	Unmodified	_VSFDNKPHSLF_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8879699707031	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.479	1	36.565	36.065	37.065	0.08625								0	0	0	0.37501	1	7408	7408		1.1098	0	1				54577	6689	31242	31243	66863	66863					0.0072018456346540916
VSFFSFLS	8	Unmodified	_VSFFSFLS_					0	0	0		ENSG00000183313|ENST00000332249|OR52L1	ENSG00000183313|ENST00000332249|OR52L1	ENSG00000183313|ENST00000332249|OR52L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2530822753906	2	467.239461	932.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.03	1	26.008	25.508	26.508	-0.022238								0	0	0	0.36169	1	4229	4229		9.3474	0	1				54578	7359	31243	31244	66864	66864					-0.004564048797988107
VSFGKPFLR	9	Unmodified	_VSFGKPFLR_					0	0	0			REV__ENSG00000116212|ENST00000371370|LRRC42	REV__ENSG00000116212|ENST00000371370|LRRC42	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8062133789062	2	525.808377	1049.6022	0.18105	9.5197E-05	0.83933	0.00044133	1.0204	0.00053653	525.8061952711749	13.59	0.5373	13.59	13.365	13.902	0					59	18	5	0	0	0	0.2322	1	452	452		14.838	0.93222	1	485420	+		54579	14919	31244	31245	66865	66865					0.07938343439445816
VSFIPKAVY	9	Unmodified	_VSFIPKAVY_					0	0	0		ENSG00000183378|ENST00000533663|OVCH2	ENSG00000183378|ENST00000533663|OVCH2	ENSG00000183378|ENST00000533663|OVCH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.7872009277344	2	512.29731	1022.58007	0.4562	0.00023371	-0.28335	-0.00014516	0.17284	8.8548E-05	512.297216461331	64.145	0.78128	64.135	63.91	64.691	-0.0095291					51	28	3	0	0	0	0.24311	1	15851	15851		16.942	1.0951	1	518470			54580	7364	31245	31246	66866	66866					0.0696811897103089
VSFLEKVNF	9	Unmodified	_VSFLEKVNF_					0	0	0			REV__ENST00000488610.5_1_9:138392556-138393921:+|nuORF	REV__ENST00000488610.5_1_9:138392556-138393921:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7698974609375	2	541.797675	1081.5808	0.79508	0.00043077	-1.0843	-0.00058746	-0.2892	-0.00015669	541.7973243929747	58.625	0.19273	58.611	58.553	58.746	-0.014271					11	6	2	0	0	0	0.24848	1	14217	14217		13.906	0	1	345760	+		54581	15150	31246	31247	66867	66867					0.04326913620070627
VSFLLHDP	8	Unmodified	_VSFLLHDP_					0	0	0		nc|ENSG00000166448|Q8N3G9-3|TMEM130;ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	nc|ENSG00000166448|Q8N3G9-3|TMEM130	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.2492370605469	2	464.25036	926.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.732	1	87.819	87.319	88.319	0.08709								0	0	0	0.36169	1	23138	23138		9.3474	0	1				54582	6081	31247	31248	66868	66868					0.01998399868762135
VSFNSKRKRKL	11	Unmodified	_VSFNSKRKRKL_					0	0	0			REV__ENSG00000170903|ENST00000301919|MSANTD4	REV__ENSG00000170903|ENST00000301919|MSANTD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.57110595703125	3	454.949127	1361.82555	-0.013492	-6.138E-06	-0.3157	-0.00014363	-0.32919	-0.00014977	454.9490897432726	18.118	0.37577	18	17.866	18.242	-0.11739					20	12	2	0	0	0	0.33334	1	1842	1842		1.2148	0	1	50963	+		54583	17604	31248	31249	66869	66869					0.15911212153719134
VSFPAGKFTIK	11	Unmodified	_VSFPAGKFTIK_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8482055664062	2	597.847699	1193.68084	0.72771	0.00043506	0.060573	3.6214E-05	0.78829	0.00047128	597.847597798572	47.661	0.47143	47.661	47.352	47.823	0					47	16	4	0	0	0	0.0021533	1	10834	10834		86.276	57.194	1	1171600			54584	4943	31249	31250	66870	66870					0.09175150953910816
VSFPAGKFTIK	11	Unmodified	_VSFPAGKFTIK_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8480834960938	2	597.847699	1193.68084	0.72368	0.00043265	-0.36363	-0.0002174	0.36005	0.00021526	597.8473384943871	47.592	0.487	47.64	47.349	47.836	0.04752					47	17	4	0	0	0	0.042306	1	10812	10812		55.467	32.731	1	1213600			54585	4943	31249	31250	66871	66871					0.09175150953910816
VSFPAGKFTIK	11	Unmodified	_VSFPAGKFTIK_					0	0	0		nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	nc|ENSG00000151176|Q8NHP8-2|PLBD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8478393554688	2	597.847699	1193.68084	0.72448	0.00043313	-0.57191	-0.00034191	0.15257	9.1217E-05	597.8472491526478	47.684	0.424	47.727	47.373	47.797	0.04332					44	15	4	0	0	0	0.076423	1	10804	10804		45.603	28.49	1	1283600			54586	4943	31249	31250	66872	66872					0.09175150953910816
VSFPGKGIVE	10	Unmodified	_VSFPGKGIVE_					0	0	0			REV__nc|ENSG00000147044|O14936-3|CASK	REV__nc|ENSG00000147044|O14936-3|CASK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.2567138671875	2	516.78985	1031.56515	0.46194	0.00023873	0.12894	6.6633E-05	0.59088	0.00030536	516.7897735957135	46.612	0.40219	46.664	46.388	46.79	0.052574					16	14	2	0	0	0	0.30555	1	10505	10505		20.415	2.2682	1	208710	+		54587	16368	31250	31251	66873	66873					0.05062627103052364
VSFPIGIYK	9	Unmodified	_VSFPIGIYK_					0	0	0		nc|ENSG00000172731|Q8TCA0-3|LRRC20;ENSG00000172731|ENST00000446961|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.297607421875	2	512.29731	1022.58007	0.074673	3.8255E-05	0.9009	0.00046153	0.97557	0.00049978	512.2974873046398	59.724	0.68068	59.724	59.445	60.126	0					62	23	4	0	0	0	0.0023784	3	14588	14536;14588;14638		107.19	59.495	1	3717600			54588	6658	31251	31252	66874;66875;66876	66875					0.0696811897103089
VSFPIGIYK	9	Unmodified	_VSFPIGIYK_					0	0	0		nc|ENSG00000172731|Q8TCA0-3|LRRC20;ENSG00000172731|ENST00000446961|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2977294921875	2	512.29731	1022.58007	0.023978	1.2284E-05	0.99743	0.00051098	1.0214	0.00052327	512.2975496134138	59.575	0.72272	59.67	59.382	60.105	0.095093					59	25	3	0	0	0	0.0010463	3	14522	14474;14522;14573		122.18	59.607	1	3892700			54589	6658	31251	31252	66877;66878;66879	66878					0.0696811897103089
VSFPIGIYK	9	Unmodified	_VSFPIGIYK_					0	0	0		nc|ENSG00000172731|Q8TCA0-3|LRRC20;ENSG00000172731|ENST00000446961|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	nc|ENSG00000172731|Q8TCA0-3|LRRC20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2977294921875	2	512.29731	1022.58007	0.2901	0.00014862	0.99251	0.00050846	1.2826	0.00065708	512.2974964060703	59.696	0.5985	59.685	59.398	59.997	-0.011486					57	20	4	0	0	0	6.1526E-05	3	14550	14505;14550;14604		147.06	84.486	1	3574400			54590	6658	31251	31252	66880;66881;66882	66881					0.0696811897103089
VSFPRSAGR	9	Unmodified	_VSFPRSAGR_					0	0	0		ENSG00000142102|ENST00000409548|PGGHG;ENST00000474221.5_1_11:293333-294746:+|nuORF;ENST00000476372.1_1_11:293373-294746:+|nuORF	ENSG00000142102|ENST00000409548|PGGHG	ENSG00000142102|ENST00000409548|PGGHG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7699279785156	2	488.769783	975.525013	0.099648	4.8705E-05	-0.095471	-4.6663E-05	0.0041775	2.0418E-06	488.76966441142065	22.424	0.52139	22.379	22.095	22.616	-0.044867					36	17	3	0	0	0	0.33018	1	3140	3140		4.3292	4.3292	1	108680			54591	4423	31252	31253	66883	66883					0.03627125223135863
VSFPRSAGR	9	Unmodified	_VSFPRSAGR_					0	0	0		ENSG00000142102|ENST00000409548|PGGHG;ENST00000474221.5_1_11:293333-294746:+|nuORF;ENST00000476372.1_1_11:293373-294746:+|nuORF	ENSG00000142102|ENST00000409548|PGGHG	ENSG00000142102|ENST00000409548|PGGHG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	488.769783	975.525013	0.18799	9.1885E-05	0.29062	0.00014204	0.47861	0.00023393	488.7698314601067	22.378	0.42957	22.277	22.097	22.527	-0.10034	-0.051942	0.00024815	NaN	4.3292	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119020			54592	4423	31252	31253							0.03627125223135863
VSFSDVFFK	9	Unmodified	_VSFSDVFFK_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2769165039062	2	538.276575	1074.5386	0.48627	0.00026175	0.49601	0.00026699	0.98228	0.00052874	538.2768077574933	67.843	0.68362	67.843	67.592	68.275	0					74	24	4	0	0	0	0.0054984	1	17053	17053		86.332	54.026	1	1925000			54593	2856	31253	31254	66884	66884					0.004309382117071436
VSFSDVFFK	9	Unmodified	_VSFSDVFFK_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2769165039062	2	538.276575	1074.5386	0.56708	0.00030525	0.42928	0.00023107	0.99637	0.00053632	538.2767723315	67.746	0.84315	67.824	67.546	68.39	0.078049					79	29	4	0	0	0	0.0037449	1	17013	17013		96.367	56.409	1	2011000			54594	2856	31253	31254	66885	66885					0.004309382117071436
VSFSDVFFK	9	Unmodified	_VSFSDVFFK_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2769165039062	2	538.276575	1074.5386	0.48879	0.00026311	0.44643	0.0002403	0.93522	0.00050341	538.2767551727326	67.855	0.7549	67.838	67.593	68.348	-0.016296					75	26	4	0	0	0	0.0046246	1	17038	17038		89.401	58.764	1	2051100			54595	2856	31253	31254	66886	66886					0.004309382117071436
VSFSLEIFVC	10	Unmodified	_VSFSLEIFVC_					0	0	0		ENST00000562806.1_1_16:53283882-53288565:+|nuORF	ENST00000562806.1_1_16:53283882-53288565:+|nuORF	ENST00000562806.1_1_16:53283882-53288565:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2906494140625	2	572.291368	1142.56818	0.2366	0.0001354	-3.1108	-0.0017803	-2.8742	-0.0016449	572.2905251099427	68.227	1.7835	68.227	67.783	69.566	0					229	64	6	0	0	0	0.023345	1	17434	17434		68.081	1.624	1	67607000			54596	11927	31254	31255	66887	66887					0.0026013416554633295
VSFSLEIFVC	10	Unmodified	_VSFSLEIFVC_					0	0	0		ENST00000562806.1_1_16:53283882-53288565:+|nuORF	ENST00000562806.1_1_16:53283882-53288565:+|nuORF	ENST00000562806.1_1_16:53283882-53288565:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2890625	2	572.291368	1142.56818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.639	1	69.705	69.205	70.205	0.066048								0	0	0	0.18461	1	17603	17603		41.84	10.571	1				54597	11927	31254	31255	66888	66888					0.0026013416554633295
VSFSQVLLLK	10	Unmodified	_VSFSQVLLLK_					0	0	0		ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2802124023438	2	567.350074	1132.6856	0.29942	0.00016988	1.4173	0.00080411	1.7167	0.00097399	567.3509437882393	68.14	0.38158	68.121	67.963	68.345	-0.01915					19	13	2	0	0	0	0.30039	1	17106	17106		23.801	12.306	1	133530			54598	6094	31255	31256	66889	66889					0.12456035096647611
VSFVLYVCP	9	Unmodified	_VSFVLYVCP_					0	0	0			REV__nc|ENSG00000105176|O94763-3|URI1	REV__nc|ENSG00000105176|O94763-3|URI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7588500976562	2	513.770071	1025.52559	0.21041	0.0001081	0.091108	4.6808E-05	0.30152	0.00015491	513.7701233227191	25.46	0.35093	25.46	25.182	25.533	0					17	11	2	0	0	0	0.30623	1	4079	4079		7.9102	0.62092	1	67877	+		54599	22927	31256	31257	66890	66890					0.013847838279616553
VSFVLYVCP	9	Unmodified	_VSFVLYVCP_					0	0	0			REV__nc|ENSG00000105176|O94763-3|URI1	REV__nc|ENSG00000105176|O94763-3|URI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7588500976562	2	513.770071	1025.52559	-0.025673	-1.319E-05	-0.15879	-8.1582E-05	-0.18446	-9.4772E-05	513.7703388921149	25.48	0.37901	25.424	25.186	25.565	-0.055931					26	12	3	0	0	0	0.30623	1	4099	4099		7.9102	2.1783	1	79662	+		54600	22927	31256	31257	66891	66891					0.013847838279616553
VSFVLYVCP	9	Unmodified	_VSFVLYVCP_					0	0	0			REV__nc|ENSG00000105176|O94763-3|URI1	REV__nc|ENSG00000105176|O94763-3|URI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7591552734375	2	513.770071	1025.52559	-0.12867	-6.6106E-05	-0.19077	-9.801E-05	-0.31943	-0.00016412	513.7699887835853	25.517	0.36264	25.485	25.237	25.599	-0.03141					21	12	2	0	0	0	0.30623	1	4086	4086		7.9102	1.187	1	99772	+		54601	22927	31256	31257	66892	66892					0.013847838279616553
VSFVLYVCP	9	Unmodified	_VSFVLYVCP_					0	0	0			REV__nc|ENSG00000105176|O94763-3|URI1	REV__nc|ENSG00000105176|O94763-3|URI1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.770071	1025.52559	0.21041	0.0001081	0.091108	4.6808E-05	0.30152	0.00015491	513.7701233227191	25.46	0.35093	25.46	25.182	25.533	0	0.003613	0.00018907	NaN	7.9102	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67877	+		54602	22927	31256	31257							0.013847838279616553
VSFYGWVN	8	Unmodified	_VSFYGWVN_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA;REV__nc|ENSG00000076555|O00763-3|ACACB	REV__nc|ENSG00000278540|Q13085-3|ACACA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2211608886719	2	486.23471	970.454868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.358	1	30.386	29.886	30.886	0.027946								0	0	0	0.35466	1	5547	5547		12.532	0.89125	1		+		54603	19349;13831	31257	31258	66893	66893					-0.03154173165330576
VSFYRDWKQ	9	Unmodified	_VSFYRDWKQ_					0	0	0		ENSG00000171819|ENST00000376819|ANGPTL7	ENSG00000171819|ENST00000376819|ANGPTL7	ENSG00000171819|ENST00000376819|ANGPTL7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2107238769531	3	410.208495	1227.60366	-0.15188	-6.2302E-05	2.7018	0.0011083	2.5499	0.001046	410.5432525531206	17.976	1.0771	17.976	17.568	18.646	0					97	36	4	0	0	0	0.32885	1	1786	1786		4.5289	0	1	166520			54604	6581	31258	31259	66894	66894					-0.001040672624412764
VSGFSLLWV	9	Unmodified	_VSGFSLLWV_					0	0	0			REV__ENSG00000007202|ENST00000528896|BLTP2	REV__ENSG00000007202|ENST00000528896|BLTP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.263427734375	2	504.28166	1006.54877	0.56882	0.00028684	-2.3216	-0.0011708	-1.7528	-0.00088391	504.27985380493953	66.119	0.49403	66.202	65.806	66.3	0.083832					19	17	2	0	0	0	0.17787	1	16513	16513		26.884	12.045	1	112370	+		54605	13382	31259	31260	66895	66895					0.045755459369502205
VSGGDLLSL	9	Unmodified	_VSGGDLLSL_					0	0	0		ENST00000448963.5_1_10:91598839-91598935:+|nuORF	ENST00000448963.5_1_10:91598839-91598935:+|nuORF	ENST00000448963.5_1_10:91598839-91598935:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.960693359375	2	430.739825	859.465098	0.061035	2.629E-05	-0.080493	-3.4671E-05	-0.019457	-8.381E-06	430.73970771511586	36.792	0.29797	36.88	36.734	37.032	0.08741					15	10	2	0	0	0	0.24688	1	7523	7523		10.074	0	1	71806			54606	10625	31260	31261	66896	66896					0.029743897692469545
VSGGGGTIVAQ	11	Unmodified	_VSGGGGTIVAQ_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.2718811035156	2	473.253631	944.49271	-0.036373	-1.7214E-05	-0.50231	-0.00023772	-0.53868	-0.00025493	473.2538052158616	27.325	0.49433	27.325	27.035	27.53	0					25	16	3	0	0	0	0.28452	1	4559	4559		29.082	5.061	1	88377			54607	5747	31261	31262	66897	66897					0.018242930294718462
VSGHDAPPAIL	11	Unmodified	_VSGHDAPPAIL_					0	0	0		nc|ENSG00000152670|Q9NQI0-3|DDX4;nc|ENSG00000152670|Q9NQI0-2|DDX4;nc|ENSG00000152670|Q9NQI0-4|DDX4;ENSG00000152670|ENST00000505374|DDX4	nc|ENSG00000152670|Q9NQI0-3|DDX4	nc|ENSG00000152670|Q9NQI0-3|DDX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2511596679688	2	538.790381	1075.56621	0.37256	0.00020073	-1.3688	-0.00073748	-0.9962	-0.00053674	538.7902695076964	41.498	0.17534	41.498	41.355	41.531	0					9	5	2	0	0	0	0.29118	1	8958	8958		21.537	2.28	1	582380			54608	5033	31262	31263	66898	66898					0.03144841471953441
VSGKLLYL	8	Unmodified	_VSGKLLYL_					0	0	0			REV__ENST00000430436.5_2_20:20370645-20370813:-|nuORF	REV__ENST00000430436.5_2_20:20370645-20370813:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	446.7787170410156	2	446.778754	891.542954	0.39482	0.0001764	-0.29314	-0.00013097	0.10169	4.5432E-05	446.77851992706286	49.359	0.6511	49.359	49.05	49.701	0					55	23	3	0	0	0	0.14707	1	11363	11363		52.268	0	1	653820	+		54609	20946	31263	31264	66899	66899					0.09284447425261533
VSGKLLYL	8	Unmodified	_VSGKLLYL_					0	0	0			REV__ENST00000430436.5_2_20:20370645-20370813:-|nuORF	REV__ENST00000430436.5_2_20:20370645-20370813:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	446.7788391113281	2	446.778754	891.542954	0.1412	6.3087E-05	0.13611	6.0809E-05	0.27731	0.0001239	446.7787185342912	49.32	0.6647	49.364	49.16	49.825	0.044891					54	24	3	0	0	0	0.28276	1	11371	11371		32.786	0	1	762100	+		54610	20946	31263	31264	66900	66900					0.09284447425261533
VSGKLLYL	8	Unmodified	_VSGKLLYL_					0	0	0			REV__ENST00000430436.5_2_20:20370645-20370813:-|nuORF	REV__ENST00000430436.5_2_20:20370645-20370813:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	446.778754	891.542954	0.39482	0.0001764	-0.29314	-0.00013097	0.10169	4.5432E-05	446.77851992706286	49.359	0.6511	49.359	49.05	49.701	0	0.0033361	-0.00020829	NaN	52.268	55	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	653820	+		54611	20946	31263	31264							0.09284447425261533
VSGKLLYL	8	Unmodified	_VSGKLLYL_					0	0	0			REV__ENST00000430436.5_2_20:20370645-20370813:-|nuORF	REV__ENST00000430436.5_2_20:20370645-20370813:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	446.778754	891.542954	0.1412	6.3087E-05	0.13611	6.0809E-05	0.27731	0.0001239	446.7787185342912	49.32	0.6647	49.364	49.16	49.825	0.044891	0.0083794	0.00017526	NaN	52.268	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	762100	+		54612	20946	31263	31264							0.09284447425261533
VSGKLLYL	8	Unmodified	_VSGKLLYL_					0	0	0			REV__ENST00000430436.5_2_20:20370645-20370813:-|nuORF	REV__ENST00000430436.5_2_20:20370645-20370813:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	446.778754	891.542954	0.13212	5.9027E-05	0.039312	1.7564E-05	0.17143	7.6591E-05	446.77868045541146	49.312	0.74374	49.344	49.014	49.758	0.032043	-0.011716	8.8769E-05	NaN	52.268	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	732240	+		54613	20946	31263	31264							0.09284447425261533
VSGKRKAK	8	Unmodified	_VSGKRKAK_					0	0	0			REV__ENSG00000121058|ENST00000240316|COIL	REV__ENSG00000121058|ENST00000240316|COIL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.2732238769531	2	437.285069	872.555585	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.422	1	31.464	30.964	31.964	0.042364								0	0	0	0.37078	1	5870	5870		5.2307	2.6532	1		+		54614	15108	31264	31265	66901	66901					0.11420903608177468
VSGLGGCPYAK	11	Unmodified	_VSGLGGCPYAK_					0	0	0		nc|ENSG00000146151|Q8TB92-5|HMGCLL1;ENSG00000146151|ENST00000274901|HMGCLL1;nc|ENSG00000146151|Q8TB92|HMGCLL1	nc|ENSG00000146151|Q8TB92-5|HMGCLL1	nc|ENSG00000146151|Q8TB92-5|HMGCLL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8245239257812	2	526.265684	1050.51682	0.4745	0.00024971	3.1207	0.0016423	3.5952	0.001892	526.2672311992702	38.156	0.39657	38.156	37.98	38.377	0					20	13	2	0	0	0	0.31791	1	7919	7919		20.415	6.0092	1	208390			54615	4695	31265	31266	66902	66902					-0.006421898085363864
VSGLSPHGLF	10	Unmodified	_VSGLSPHGLF_					0	0	0		ENST00000327490.7_1_17:74266941-74267184:+|nuORF	ENST00000327490.7_1_17:74266941-74267184:+|nuORF	ENST00000327490.7_1_17:74266941-74267184:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.2746887207031	2	507.274367	1012.53418	0.29398	0.00014913	0.42	0.00021306	0.71399	0.00036219	507.2743854891131	67.036	0.50465	67.036	66.717	67.222	0					28	17	2	0	0	0	0.29978	1	16828	16828		20.454	2.3073	1	304550			54616	9423	31266	31267	66903	66903					0.028414737888056152
VSGLVYLKV	9	Unmodified	_VSGLVYLKV_					0	0	0			REV__ENSG00000123689|ENST00000367029|G0S2	REV__ENSG00000123689|ENST00000367029|G0S2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.8134460449219	2	489.305136	976.595718	0.69732	0.0003412	-0.060293	-2.9502E-05	0.63702	0.0003117	489.3051233794858	50.891	0.32011	50.891	50.686	51.006	0					18	11	2	0	0	0	0.21389	1	11805	11805		25.399	2.2509	1	224170	+		54617	15199	31267	31268	66904	66904					0.10648405488097978
VSGLVYLKV	9	Unmodified	_VSGLVYLKV_					0	0	0			REV__ENSG00000123689|ENST00000367029|G0S2	REV__ENSG00000123689|ENST00000367029|G0S2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.81341552734375	2	489.305136	976.595718	0.68406	0.00033471	-0.022881	-1.1196E-05	0.66118	0.00032352	489.3051638806124	50.915	0.3131	50.924	50.729	51.042	0.0095634					18	11	2	0	0	0	0.1939	1	11839	11839		30.637	11.38	1	245990	+		54618	15199	31267	31268	66905	66905					0.10648405488097978
VSGLYQRLESK	11	Unmodified	_VSGLYQRLESK_					0	0	0		nc|ENSG00000132837|Q9UI17-2|DMGDH;ENST00000518477.5_1_5:78317432-78365396:-|nuORF;DMGDH-NMNAT2|1|fusion;ENSG00000132837|ENST00000255189|DMGDH	nc|ENSG00000132837|Q9UI17-2|DMGDH	nc|ENSG00000132837|Q9UI17-2|DMGDH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.58221435546875	3	427.238343	1278.6932	0.056387	2.4091E-05	0.44808	0.00019144	0.50446	0.00021553	427.23841923621274	19.752	0.63846	19.696	19.423	20.062	-0.055693					45	22	3	0	0	0	0.3299	1	2329	2329		9.7643	2.2872	1	123040			54619	266	31268	31269	66906	66906					0.0650014262625973
VSGNHLKGWRS	11	Unmodified	_VSGNHLKGWRS_					0	0	0			REV__ENST00000355221.7_3_8:54708381-54714385:-|nuORF	REV__ENST00000355221.7_3_8:54708381-54714385:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.5505676269531	3	414.223028	1239.64725	0.13269	5.4961E-05	-1.008	-0.00041753	-0.8753	-0.00036257	414.2223177217053	19.075	0.603	18.958	18.706	19.309	-0.11739					25	21	2	0	0	0	0.33094	1	2210	2210		7.4771	0.43998	1	31437	+		54620	20185	31269	31270	66907	66907					0.03701542234716726
VSGNHLKGWRS	11	Unmodified	_VSGNHLKGWRS_					0	0	0			REV__ENST00000355221.7_3_8:54708381-54714385:-|nuORF	REV__ENST00000355221.7_3_8:54708381-54714385:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	414.223028	1239.64725	-0.010839	-4.4899E-06	-1.1316	-0.00046875	-1.1425	-0.00047324	414.2225291955649	18.961	0.31385	18.903	18.763	19.077	-0.058172	-0.027563	-3.6883E-05	NaN	7.4771	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36265	+		54621	20185	31269	31270							0.03701542234716726
VSGPRLFL	8	Unmodified	_VSGPRLFL_					0	0	0		ENST00000476218.1_1_7:75508475-75509583:+|nuORF;ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2	ENST00000476218.1_1_7:75508475-75509583:+|nuORF	ENST00000476218.1_1_7:75508475-75509583:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	444.76910400390625	2	444.76872	887.522887	0.37361	0.00016617	0.055314	2.4602E-05	0.42892	0.00019077	444.7686815023582	55.356	0.79784	55.337	54.976	55.774	-0.019077					64	29	3	0	0	0	0.12475	1	13227	13227		56.177	20.133	1	1563100			54622	339	31270	31271	66908	66908					0.07462696485310971
VSGRVNLEV	9	Unmodified	_VSGRVNLEV_					0	0	0		ENSG00000113369|ENST00000265138|ARRDC3;ARRDC3|p.E80Rfs*6|1|0.11|ENSG00000113369|chr5:91382855-91382856|-/T|frameshift_variant	ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.7772216796875	2	486.777274	971.539994	0.073699	3.5875E-05	0.050416	2.4541E-05	0.12412	6.0416E-05	486.77730053714106	38.365	1.4495	38.365	37.98	39.43	0					119	51	3	0	0	0	0.052436	1	8011	8011		74.2	9.9633	1	5468700			54623	2499	31271	31272	66909	66909					0.053085723004642205
VSGRVNLEV	9	Unmodified	_VSGRVNLEV_					0	0	0		ENSG00000113369|ENST00000265138|ARRDC3;ARRDC3|p.E80Rfs*6|1|0.11|ENSG00000113369|chr5:91382855-91382856|-/T|frameshift_variant	ENSG00000113369|ENST00000265138|ARRDC3	ENSG00000113369|ENST00000265138|ARRDC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.77728271484375	2	486.777274	971.539994	0.3154	0.00015353	-0.25037	-0.00012188	0.065026	3.1653E-05	486.7771535709768	38.276	1.2535	38.374	37.981	39.234	0.097527					114	44	3	0	0	0	0.052436	1	7972	7972		74.2	9.9633	1	5047600			54624	2499	31271	31272	66910	66910					0.053085723004642205
VSGSKKTVRRK	11	Unmodified	_VSGSKKTVRRK_					0	0	0			REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	REV__nc|ENSG00000205213|Q9BXB1-2|LGR4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.3896484375	2	623.391128	1244.7677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.03	1	104.02	103.52	104.52	-0.0011139								0	0	0	0.38126	1	27655	27655		1.1933	0	1		+		54625	18983	31272	31273	66911	66911					0.15510950228303955
VSGSSDEAAYI	11	Unmodified	_VSGSSDEAAYI_					0	0	0		ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	ENSG00000143476|ENST00000366991|DTL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3001098632812	2	549.751118	1097.48768	0.54321	0.00029863	-2.5798	-0.0014183	-2.0366	-0.0011196	550.2513641659604	63.166	0.5261	63.261	62.985	63.511	0.095722					32	18	2	0	0	0	0.30789	1	15575	15575		22.736	5.794	1	249380			54626	4519	31273	31274	66912	66912					-0.05716055623815919
VSGTKGSKSR	10	Unmodified	_VSGTKGSKSR_					0	0	0		ENST00000303538.12_1_4:39824880-39824973:-|nuORF	ENST00000303538.12_1_4:39824880-39824973:-|nuORF	ENST00000303538.12_1_4:39824880-39824973:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.30133056640625	2	503.78563	1005.55671	0.1925	9.6981E-05	0.65191	0.00032842	0.84441	0.0004254	504.2869831180202	18.433	2.326	18.433	17.69	20.016	0					123	81	3	0	0	0	0.31237	1	1768	1768		16.149	3.6176	1	93590			54627	9249	31274	31275	66913	66913					0.05415073186441077
VSGTLRKHI	9	Unmodified	_VSGTLRKHI_					0	0	0		nc|ENSG00000274611|Q8IZP1-2|TBC1D3;ENSG00000275954|ENST00000620210|TBC1D3F;nc|ENSG00000275954|A6NER0|TBC1D3F;ENSG00000278599|ENST00000621587|TBC1D3E;ENSG00000278299|ENST00000622206|TBC1D3C;ENSG00000274933|ENST00000621034|TBC1D3I;ENSG00000274611|ENST00000620215|TBC1D3;ENSG00000274512|ENST00000612727|TBC1D3L;ENSG00000274419|ENST00000616101|TBC1D3D;ENSG00000273513|ENST00000620247|TBC1D3K	nc|ENSG00000274611|Q8IZP1-2|TBC1D3	nc|ENSG00000274611|Q8IZP1-2|TBC1D3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.80889892578125	2	505.808908	1009.60326	0.31575	0.00015971	-0.27291	-0.00013804	0.042839	2.1668E-05	505.8088070221481	29.245	0.5855	29.257	28.884	29.469	0.012266					34	20	2	0	0	0	0.24688	1	5225	5225		14.838	0.93222	1	214540			54628	8705	31275	31276	66914	66914					0.098845578083683
VSGTPAPPARS	11	Unmodified	_VSGTPAPPARS_					0	0	0		ENSG00000006047|ENST00000007699|YBX2	ENSG00000006047|ENST00000007699|YBX2	ENSG00000006047|ENST00000007699|YBX2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.2794189453125	2	520.28018	1038.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.563	1	41.563	41.063	42.063	0								0	0	0	0.29935	1	8968	8968		19.362	3.5148	1				54629	351	31276	31277	66915	66915					0.028076708121261618
VSGTPVPTGP	10	Unmodified	_VSGTPVPTGP_					0	0	0			REV__ENSG00000167797|ENST00000301488|CDK2AP2	REV__ENSG00000167797|ENST00000301488|CDK2AP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.27423095703125	2	456.245275	910.475997	0.099805	4.5536E-05	1.2328	0.00056247	1.3326	0.000608	456.24376731721577	21.745	1.0228	21.745	21.199	22.222	0					63	36	3	0	0	0	0.31267	1	2791	2791		14.838	0	1	143770	+		54630	17413	31277	31278	66916	66916					0.017177921435290955
VSGYCRSVT	9	Unmodified	_VSGYCRSVT_					0	0	0		ENSG00000135917|ENST00000644224|SLC19A3;ENST00000509872.1_1_2:228512647-228513058:-|nuORF	ENSG00000135917|ENST00000644224|SLC19A3	ENSG00000135917|ENST00000644224|SLC19A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.220947265625	2	486.234384	970.454216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.169	1	30.197	29.697	30.697	0.027946								0	0	0	0.23367	1	5489	5489		11.64	0.81637	1				54631	3920	31278	31279	66917	66917					-0.03219335876678997
VSHERQPYSN	10	Unmodified	_VSHERQPYSN_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.5472106933594	3	406.195026	1215.56325	-0.0035249	-1.4318E-06	-1.3452	-0.00054642	-1.3487	-0.00054785	406.19445221973854	33.255	0.41211	33.311	33.143	33.555	0.055309					25	14	3	0	0	0	0.32054	1	6488	6488		1.5923	0.26264	1	84009	+		54632	14911	31279	31280	66918	66918					-0.03591033652855913
VSHGWILGH	9	Unmodified	_VSHGWILGH_					0	0	0		ENST00000565137.1_1_16:31498819-31499703:-|nuORF	ENST00000565137.1_1_16:31498819-31499703:-|nuORF	ENST00000565137.1_1_16:31498819-31499703:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.7787170410156	2	503.266876	1004.5192	0.022948	1.1549E-05	3.4715	0.0017471	3.4944	0.0017586	503.26832165192513	14.966	0.10597	14.902	14.82	14.926	-0.064413					5	3	2	0	0	0	0.30166	1	874	874		8.5933	0.68312	1	12856			54633	11961	31280	31281	66919	66919					0.01712026711470571
VSHHTWEF	8	Unmodified	_VSHHTWEF_					0	0	0		ENSG00000163810|ENST00000296125|TGM4	ENSG00000163810|ENST00000296125|TGM4	ENSG00000163810|ENST00000296125|TGM4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.7384643554688	2	521.740691	1041.46683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.649	1	45.709	45.209	46.209	0.059834								0	0	0	0.35014	1	10216	10216		14.582	2.0501	1				54634	5735	31281	31282	66920	66920					-0.05224556422149362
VSHITRSF	8	Unmodified	_VSHITRSF_					0	0	0		nc|ENSG00000015520|Q9UHC9-2|NPC1L1;ENSG00000015520|ENST00000381160|NPC1L1;nc|ENSG00000015520|Q9UHC9|NPC1L1;nc|ENSG00000015520|Q9UHC9-4|NPC1L1	nc|ENSG00000015520|Q9UHC9-2|NPC1L1	nc|ENSG00000015520|Q9UHC9-2|NPC1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.2691955566406	2	473.758884	945.503215	0.28868	0.00013676	0.93401	0.0004425	1.2227	0.00057926	473.7593433260266	19.672	0.83514	19.616	19.227	20.062	-0.055693					55	29	3	0	0	0	0.4419	1	2245	2245		8.5933	0	1	165210			54635	482	31282	31283	66921	66921					0.028283204745775947
VSHNLRQIIFV	11	Unmodified	_VSHNLRQIIFV_					0	0	0		ENST00000536494.5_1_12:64055087-64062592:-|nuORF	ENST00000536494.5_1_12:64055087-64062592:-|nuORF	ENST00000536494.5_1_12:64055087-64062592:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.91009521484375	3	442.594461	1324.76155	-1.0794	-0.00047772	-0.04314	-1.9093E-05	-1.1225	-0.00049682	442.92861274184963	35.014	0.31276	35.014	34.805	35.118	0					13	10	2	0	0	0	0.33326	1	6975	6975		1.4551	0	1	62146			54636	11682	31283	31284	66922	66922					0.11216431996763276
VSHPKKEK	8	Unmodified	_VSHPKKEK_					0	0	0			REV__ENST00000233813.4_1_2:217537579-217537897:-|nuORF	REV__ENST00000233813.4_1_2:217537579-217537897:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.25030517578125	2	476.782359	951.550165	-0.0097671	-4.6568E-06	0.02604	1.2415E-05	0.016273	7.7587E-06	476.7823570962675	16.085	0.65575	16.085	15.892	16.548	0					38	22	3	0	0	0	0.344	1	1177	1177		2.5775	0.27475	1	113740	+		54637	19477	31284	31285	66923	66923					0.07245180025711306
VSHQEEDLGSL	11	Unmodified	_VSHQEEDLGSL_					0	0	0			REV__nc|ENSG00000196411|P54760-3|EPHB4	REV__nc|ENSG00000196411|P54760-3|EPHB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.83551025390625	3	405.194692	1212.56225	0.041939	1.6993E-05	1.7117	0.00069356	1.7536	0.00071056	405.1952116232966	29.967	0.34514	29.967	29.718	30.064	0					16	11	3	0	0	0	0.329	1	5352	5352		4.7159	0	1	70065	+		54638	18649	31285	31286	66924	66924					-0.03553292812421205
VSHRGKTLQDI	11	Unmodified	_VSHRGKTLQDI_					0	0	0		ENSG00000108932|ENST00000580666|SLC16A6	ENSG00000108932|ENST00000580666|SLC16A6	ENSG00000108932|ENST00000580666|SLC16A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.5700378417969	3	418.570204	1252.68878	0.087788	3.6745E-05	-0.34501	-0.00014441	-0.25722	-0.00010767	418.5699975551285	24.013	0.50545	23.94	23.646	24.151	-0.072559					37	16	3	0	0	0	0.39698	1	3642	3642		11.631	0.73241	1	205950			54639	2225	31286	31287	66925	66925					0.0725467820338963
VSHRVRRQR	9	Unmodified	_VSHRVRRQR_					0	0	0			REV__ENST00000216274.9_1_14:24808704-24809147:-|nuORF	REV__ENST00000216274.9_1_14:24808704-24809147:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.3582763671875	2	597.357954	1192.70135	0.5263	0.00031439	-0.0252	-1.5053E-05	0.5011	0.00029934	597.3585424498953	90.185	1.4279	90.185	89.495	90.923	0					313	115	4	0	0	0	0.34809	1	23995	23995		1.6526	0.17072	1	1038300	+		54640	19412	31287	31288	66926	66926					0.11271179176924306
VSHSDLLQYR	10	Unmodified	_VSHSDLLQYR_					0	0	0		ENST00000519256.5_1_5:170585477-170669877:+|nuORF;ENST00000389118.8_1_5:170395310-170711609:+|nuORF;ENST00000522533.5_1_5:170395310-170725859:+|nuORF;ENST00000519949.5_1_5:170395310-170725859:+|nuORF;ENSG00000204764|ENST00000523189|RANBP17;ENST00000521834.1_1_5:170668065-170698169:+|nuORF	ENST00000519256.5_1_5:170585477-170669877:+|nuORF	ENST00000519256.5_1_5:170585477-170669877:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.5480651855469	3	406.547288	1216.62004	-0.42973	-0.00017471	1.6964	0.00068965	1.2666	0.00051495	406.54805002908245	12.595	0.41763	12.595	12.397	12.815	0					23	13	2	0	0	0	0.38773	1	168	168		3.0723	1.33	1	50817			54641	8255	31288	31289	66927	66927					0.020390139036635446
VSHSEKFEKGE	11	Unmodified	_VSHSEKFEKGE_					0	0	0			REV__nc|ENSG00000116731|Q13029-5|PRDM2	REV__nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.1851806640625	3	426.210453	1275.60953	-0.30749	-0.00013105	0.088747	3.7825E-05	-0.21874	-9.323E-05	426.5443648851354	22.945	0.50639	22.858	22.658	23.165	-0.087608					23	17	2	0	0	0	0.33326	1	3370	3370		1.4551	0	1	30639	+		54642	14933	31289	31290	66928	66928					-0.017250135414315082
VSHSELRKLF	10	Unmodified	_VSHSELRKLF_					0	0	0		ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.547119140625	3	405.899662	1214.67716	-0.19091	-7.7489E-05	-3.8105	-0.0015467	-4.0014	-0.0016242	405.89842670195844	33.423	0.77225	33.489	32.997	33.77	0.0667					36	27	2	0	0	0	0.3179	1	6472	6472		8.9762	1.4992	1	83500			54643	4725	31290	31291	66929	66929					0.07840481180028291
VSHSELRKLF	10	Unmodified	_VSHSELRKLF_					0	0	0		ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	ENSG00000146733|ENST00000275605|PSPH	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	405.899662	1214.67716	-0.20074	-8.148E-05	-3.022	-0.0012266	-3.2227	-0.0013081	405.89825303554636	33.169	0.44677	33.169	33.091	33.538	0	-0.16043	0.00045076	NaN	8.9762	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100970			54644	4725	31290	31291							0.07840481180028291
VSHSNFEI	8	Unmodified	_VSHSNFEI_					0	0	0		nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1	nc|ENSG00000107104|Q14678-2|KANK1	nc|ENSG00000107104|Q14678-2|KANK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.727294921875	2	466.727249	931.439946	-0.14419	-6.73E-05	0.27046	0.00012623	0.12627	5.8933E-05	466.72729396833114	28.369	0.67435	28.365	28.14	28.815	-0.0042572					40	23	3	0	0	0	0.41097	1	4950	4950		18.135	2.2878	1	248020			54645	2111	31291	31292	66930	66930					-0.028516650333358484
VSHSSQNIC	9	Unmodified	_VSHSSQNIC_					0	0	0		ENST00000266031.8_1_3:50340655-50340802:-|nuORF	ENST00000266031.8_1_3:50340655-50340802:-|nuORF	ENST00000266031.8_1_3:50340655-50340802:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.2931213378906	2	487.721641	973.428729	0.12879	6.2814E-05	-0.79249	-0.00038651	-0.6637	-0.0003237	487.72114557551197	15.896	0.33647	15.833	15.67	16.006	-0.062534					24	11	3	0	0	0	0.25879	1	1204	1204		4.756	0.42677	1	35962			54646	9057	31292	31293	66931	66931					-0.059048103991244716
VSHTERAL	8	Unmodified	_VSHTERAL_					0	0	0		nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF	nc|ENSG00000129351|Q12906-5|ILF3	nc|ENSG00000129351|Q12906-5|ILF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2748107910156	2	456.748516	911.482479	0.018562	8.4782E-06	0.15135	6.9129E-05	0.16991	7.7607E-05	456.74848365957973	22.08	0.57957	22.08	21.896	22.476	0					35	20	2	0	0	0	0.34294	1	2983	2983		7.2892	0.56607	1	99974			54647	3421	31293	31294	66932	66932					0.023197300949163946
VSHVLTSALRR	11	Unmodified	_VSHVLTSALRR_					0	0	0			REV__ENST00000505813.1_1_5:110284728-110284920:-|nuORF	REV__ENST00000505813.1_1_5:110284728-110284920:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8695068359375	2	619.870028	1237.7255	-0.057748	-3.5796E-05	-0.26006	-0.0001612	-0.31781	-0.000197	619.8694425647374	97.597	0.96609	97.597	97.024	97.991	0					189	100	3	0	0	0	0.47649	1	25941	25941		1.1933	0	1	195890	+		54648	21744	31294	31295	66933	66933					0.11614974819894996
VSHVLTSALRR	11	Unmodified	_VSHVLTSALRR_					0	0	0			REV__ENST00000505813.1_1_5:110284728-110284920:-|nuORF	REV__ENST00000505813.1_1_5:110284728-110284920:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8711547851562	2	619.870028	1237.7255	-0.037362	-2.316E-05	-0.063087	-3.9106E-05	-0.10045	-6.2265E-05	619.8693202261267	96.923	0.42683	96.993	96.715	97.142	0.070465					65	40	2	0	0	0	0.46475	1	25897	25897		2.7352	1.0826	1	143400	+		54649	21744	31294	31295	66934	66934					0.11614974819894996
VSHVTLRLL	9	Unmodified	_VSHVTLRLL_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7716064453125	2	519.326934	1036.63931	0.40352	0.00020956	1.4728	0.00076486	1.8763	0.00097442	519.3285967564165	62.428	0.11268	62.419	62.353	62.465	-0.0085564					5	3	2	0	0	0	0.25202	1	15395	15395		6.7232	0	1	91828			54650	1349	31295	31296	66935	66935					0.12246014985248621
VSIAGRRQ	8	Unmodified	_VSIAGRRQ_					0	0	0			REV__ENST00000501008.2_1_12:92540095-92540353:+|nuORF	REV__ENST00000501008.2_1_12:92540095-92540353:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.7644958496094	2	443.764501	885.514448	0.26923	0.00011948	-0.093501	-4.1493E-05	0.17573	7.7983E-05	443.76433304385756	69.04	3.7205	69.021	68.458	72.179	-0.019157					315	134	3	0	0	0	0.46022	1	17563	17563		2.3027	0	1	1263800	+		54651	21707	31296	31297	66936	66936					0.0671114256869032
VSIARPDV	8	Unmodified	_VSIARPDV_					0	0	0			REV__ENST00000483534.5_1_20:48699307-48713022:-|nuORF	REV__ENST00000483534.5_1_20:48699307-48713022:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.2402648925781	2	428.747985	855.481417	0.25969	0.00011134	-0.26202	-0.00011234	-0.0023306	-9.9925E-07	428.7479590901662	20.453	0.70869	20.4	20.177	20.886	-0.05291					41	25	3	0	0	0	0.3812	1	2509	2509		21.537	2.28	1	227400	+		54652	19205	31297	31298	66937	66937					0.047895157259858934
VSIFLKQSL	9	Unmodified	_VSIFLKQSL_					0	0	0			REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.2567138671875	2	517.815867	1033.61718	0.27267	0.0001412	0.22421	0.0001161	0.49689	0.0002573	517.8158402756818	47.049	0.64087	47.101	46.929	47.57	0.052574					36	23	2	0	0	0	0.25622	1	10607	10607		3.9444	0	1	655710	+		54653	18958	31298	31299	66938	66938					0.10171790516801593
VSIFSRQEL	9	Unmodified	_VSIFSRQEL_					0	0	0			REV__ENST00000521672.5_1_5:170814874-170818337:+|nuORF	REV__ENST00000521672.5_1_5:170814874-170818337:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7982788085938	2	539.798206	1077.58186	0.60879	0.00032863	-1.3115	-0.00070796	-0.70274	-0.00037934	539.7981949404959	46.553	0.72614	46.606	46.388	47.114	0.052574					47	26	3	0	0	0	0.19747	1	10522	10522		24.021	0	1	714080	+		54654	21865	31299	31300	66939	66939					0.0461712798901317
VSIGDPKKK	9	Unmodified	_VSIGDPKKK_					0	0	0		ENST00000556425.2_1_15:21937379-21938108:-|nuORF;ENSG00000180370|ENST00000327134|PAK2	ENST00000556425.2_1_15:21937379-21938108:-|nuORF	ENST00000556425.2_1_15:21937379-21938108:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2854309082031	2	486.297842	970.581131	-0.074128	-3.6048E-05	-0.24596	-0.00011961	-0.32009	-0.00015566	486.29769795272983	13.674	0.45339	13.674	13.509	13.962	0					37	15	3	0	0	0	0.12279	1	490	490		34.932	9.9411	1	146660			54655	7186	31300	31301	66940	66940					0.09466333339946686
VSIGDPKKK	9	Unmodified	_VSIGDPKKK_					0	0	0		ENST00000556425.2_1_15:21937379-21938108:-|nuORF;ENSG00000180370|ENST00000327134|PAK2	ENST00000556425.2_1_15:21937379-21938108:-|nuORF	ENST00000556425.2_1_15:21937379-21938108:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2851867675781	2	486.297842	970.581131	-0.11797	-5.7371E-05	-0.18707	-9.0971E-05	-0.30504	-0.00014834	486.29767346310774	13.751	0.44629	13.647	13.487	13.933	-0.10466					35	15	4	0	0	0	0.21026	1	511	511		28.495	3.5035	1	131890			54656	7186	31300	31301	66941	66941					0.09466333339946686
VSIGDPKKK	9	Unmodified	_VSIGDPKKK_					0	0	0		ENST00000556425.2_1_15:21937379-21938108:-|nuORF;ENSG00000180370|ENST00000327134|PAK2	ENST00000556425.2_1_15:21937379-21938108:-|nuORF	ENST00000556425.2_1_15:21937379-21938108:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2854919433594	2	486.297842	970.581131	-0.069843	-3.3965E-05	-0.077968	-3.7916E-05	-0.14781	-7.188E-05	486.29767098896133	13.773	0.42665	13.707	13.55	13.977	-0.066068					31	14	3	0	0	0	0.1558	1	513	513		41.956	10.687	1	123980			54657	7186	31300	31301	66942	66942					0.09466333339946686
VSIGHSLLF	9	Unmodified	_VSIGHSLLF_					0	0	0			REV__ENST00000396060.6_1_15:59944417-59944510:-|nuORF	REV__ENST00000396060.6_1_15:59944417-59944510:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.3017578125	2	486.779285	971.544017	0.1527	7.4332E-05	-0.22808	-0.00011102	-0.075374	-3.669E-05	486.77911721749183	59.463	0.81118	59.463	58.864	59.675	0					38	28	2	0	0	0	0.25066	1	14476	14476		11.64	4.3511	1	172500	+		54658	20647	31301	31302	66943	66943					0.0571066179418267
VSIINVRPF	9	Unmodified	_VSIINVRPF_					0	0	0			REV__nc|ENSG00000144895|Q9BY44-3|EIF2A	REV__nc|ENSG00000144895|Q9BY44-3|EIF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3173217773438	2	522.813659	1043.61277	0.41285	0.00021584	3.4083	0.0017819	3.8211	0.0019977	523.3173528028776	63.065	0.62041	63.057	62.731	63.351	-0.0085526					57	22	4	0	0	0	0.23007	1	15593	15593		19.257	1.1106	1	637010	+		54659	23020	31302	31303	66944	66944					0.09270326093883341
VSIITVNGSL	10	Unmodified	_VSIITVNGSL_					0	0	0			REV__nc|ENSG00000198965|Q8NGX6|OR10R2	REV__nc|ENSG00000198965|Q8NGX6|OR10R2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.31304931640625	2	501.795132	1001.57571	0.5073	0.00025456	-0.024627	-1.2357E-05	0.48268	0.0002422	501.7951501628756	44.637	0.48621	44.712	44.502	44.988	0.075047					24	17	2	0	0	0	0.23397	1	9911	9911		28.495	0.86571	1	125960	+		54660	23164	31303	31304	66945	66945					0.07498609757476515
VSIITVNGSL	10	Unmodified	_VSIITVNGSL_					0	0	0			REV__nc|ENSG00000198965|Q8NGX6|OR10R2	REV__nc|ENSG00000198965|Q8NGX6|OR10R2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	501.795132	1001.57571	0.47921	0.00024046	-0.64464	-0.00032348	-0.16544	-8.3015E-05	501.7947286160926	44.688	0.26822	44.757	44.599	44.867	0.068569	0.022603	-0.00041773	NaN	28.495	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176560	+		54661	23164	31303	31304							0.07498609757476515
VSIITVNGSL	10	Unmodified	_VSIITVNGSL_					0	0	0			REV__nc|ENSG00000198965|Q8NGX6|OR10R2	REV__nc|ENSG00000198965|Q8NGX6|OR10R2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	501.795132	1001.57571	0.5073	0.00025456	-0.024627	-1.2357E-05	0.48268	0.0002422	501.7951501628756	44.637	0.48621	44.712	44.502	44.988	0.075047	-0.022603	0.00020451	NaN	28.495	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125960	+		54662	23164	31303	31304							0.07498609757476515
VSIKQERCDPE	11	Unmodified	_VSIKQERCDPE_					0	0	0		ENSG00000089775|ENST00000608382|ZBTB25	ENSG00000089775|ENST00000608382|ZBTB25	ENSG00000089775|ENST00000608382|ZBTB25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.77996826171875	3	435.21521	1302.6238	-0.090838	-3.9534E-05	0.69275	0.0003015	0.60192	0.00026196	435.2170189607581	31.382	0.46164	31.423	31.098	31.559	0.040991					32	16	3	0	0	0	0.33303	1	5774	5774		2.4348	1.808	1	172690			54663	1365	31304	31305	66946	66946					-0.015406843847813434
VSIKYCFRRIS	11	Unmodified	_VSIKYCFRRIS_					0	0	0		ENST00000570184.1_2_16:57212686-57219966:-|nuORF	ENST00000570184.1_2_16:57212686-57219966:-|nuORF	ENST00000570184.1_2_16:57212686-57219966:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.2426452636719	3	457.923702	1370.74928	0.13919	6.374E-05	-3.4773	-0.0015923	-3.3381	-0.0015286	457.9219840617633	43.94	0.31523	44.024	43.841	44.157	0.083992					16	11	2	0	0	0	0.3325	1	9651	9651		2.2527	0	1	349840			54664	12019	31305	31306	66947	66947					0.07873072262100322
VSILLRNPF	9	Unmodified	_VSILLRNPF_					0	0	0		ENSG00000054690|ENST00000329153|PLEKHH1	ENSG00000054690|ENST00000329153|PLEKHH1	ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3321533203125	2	529.821484	1057.62842	0.54339	0.0002879	0.55705	0.00029514	1.1004	0.00058304	529.821488301112	63.87	0.87572	63.963	63.678	64.554	0.09288					58	31	3	0	0	0	0.2322	1	16002	16002		14.838	7.549	1	686000			54665	693	31306	31307	66948	66948					0.10190612610927019
VSILSLHSV	9	Unmodified	_VSILSLHSV_					0	0	0			REV__nc|ENSG00000110756|Q9UPZ3-2|HPS5	REV__nc|ENSG00000110756|Q9UPZ3-2|HPS5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.821044921875	2	477.784567	953.554582	0.22401	0.00010703	-0.13296	-6.3525E-05	0.09105	4.3502E-05	477.7844432251515	28.824	0.65653	28.82	28.658	29.315	-0.0042572					36	22	2	0	0	0	0.2451	1	5182	5182		15.847	1.4418	1	116860	+		54666	14683	31307	31308	66949	66949					0.07594644448613508
VSILTFTMS	9	Oxidation (M)	_VSILTFTM(Oxidation (M))S_		VSILTFTM(1)S		VSILTFTM(44)S	0	0	1			REV__ENSG00000179399|ENST00000377067|GPC5	REV__ENSG00000179399|ENST00000377067|GPC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7631530761719	2	507.762443	1013.51033	0.35337	0.00017943	0.48329	0.0002454	0.83666	0.00042482	507.762935877177	62.617	2.0906	62.714	62.03	64.121	0.096985					195	75	5	0	0	0	0.07432	1	15482	15482		43.858	16.975	1	23591000	+		54667	18074	31308	31309	66950	66950		1004			0.004118722401244668
VSIPDVNVNLK	11	Unmodified	_VSIPDVNVNLK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.3297729492188	2	599.34552	1196.67649	0.60963	0.00036538	-0.84063	-0.00050383	-0.23099	-0.00013845	599.3449893600213	57.328	0.64289	57.328	56.962	57.605	0					63	23	4	0	0	0	0.30327	1	13849	13849		26.021	5.4398	1	1383200			54668	3189	31309	31310	66951	66951					0.08601641740301602
VSIPDVNVNLK	11	Unmodified	_VSIPDVNVNLK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.81884765625	2	599.34552	1196.67649	0.51182	0.00030675	-0.8365	-0.00050135	-0.32468	-0.0001946	599.3450453469242	57.172	0.74363	57.25	56.909	57.652	0.078674					60	26	4	0	0	0	0.27558	1	13780	13780		27.223	5.6331	1	1429300			54669	3189	31309	31310	66952	66952					0.08601641740301602
VSIPDVNVNLK	11	Unmodified	_VSIPDVNVNLK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.3456420898438	2	599.34552	1196.67649	0.24966	0.00014963	-0.28875	-0.00017306	-0.039091	-2.3429E-05	599.3453670147113	57.291	0.68411	57.274	56.975	57.659	-0.017197					56	24	3	0	0	0	0.043061	1	13815	13815		55.249	29.228	1	1442400			54670	3189	31309	31310	66953	66953					0.08601641740301602
VSIPEGHYHVE	11	Unmodified	_VSIPEGHYHVE_					0	0	0			REV__nc|ENSG00000120500|P36575-2|ARR3	REV__nc|ENSG00000120500|P36575-2|ARR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.2392883300781	3	422.875293	1265.60405	0.12549	5.3066E-05	-0.12605	-5.3303E-05	-0.00056075	-2.3713E-07	423.2096268972047	21.118	0.6534	21.065	20.835	21.488	-0.05291					53	22	4	0	0	0	0.33334	1	2797	2797		1.2148	0	1	141140	+		54671	15085	31310	31311	66954	66954					-0.018126923332374645
VSIPEKLVIWT	11	Unmodified	_VSIPEKLVIWT_					0	0	0			REV__ENSG00000104267|ENST00000285379|CA2	REV__ENSG00000104267|ENST00000285379|CA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.8798828125	2	642.881739	1283.74892	0.80659	0.00051854	-2.3865	-0.0015343	-1.5799	-0.0010157	642.8794448090754	50.536	0.54964	50.536	50.296	50.846	0					34	19	3	0	0	0	0.41288	1	11756	11756		9.544	0.16085	1	722530	+		54672	14400	31311	31312	66955	66955					0.1183997581388212
VSIRHLSF	8	Unmodified	_VSIRHLSF_					0	0	0		ENST00000460219.2_1_6:36937648-36937711:-|nuORF	ENST00000460219.2_1_6:36937648-36937711:-|nuORF	ENST00000460219.2_1_6:36937648-36937711:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7640075683594	2	479.777077	957.5396	0.47967	0.00023013	0.15662	7.5142E-05	0.63629	0.00030528	479.7772285036872	47.835	0.82127	47.878	47.637	48.458	0.04332					49	30	2	0	0	0	0.37937	1	10998	10998		21.747	3.6117	1	1790200			54673	10723	31312	31313	66956	66956					0.059131973712851504
VSIRYKLK	8	Unmodified	_VSIRYKLK_					0	0	0		nc|ENSG00000151093|Q9NWU1-2|OXSM;ENSG00000151093|ENST00000280701|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	nc|ENSG00000151093|Q9NWU1-2|OXSM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7788391113281	2	503.824027	1005.6335	0.065529	3.3015E-05	0.65336	0.00032918	0.71889	0.00036219	503.82443396602156	14.852	0.28716	14.743	14.56	14.847	-0.10981					14	9	2	0	0	0	0.34353	1	860	860		4.756	0.42677	1	30028			54674	4936	31313	31314	66957	66957					0.13090916473561265
VSISFTATK	9	Unmodified	_VSISFTATK_					0	0	0			REV__ENSG00000141543|ENST00000649764|EIF4A3	REV__ENSG00000141543|ENST00000649764|EIF4A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7493591308594	2	477.26875	952.522947	0.33117	0.00015806	-0.28743	-0.00013718	0.043741	2.0876E-05	477.2684652142799	29.613	0.69639	29.613	29.273	29.97	0					38	24	2	0	0	0	0.15943	1	5303	5303		39.95	0	1	108680	+		54675	16082	31314	31315	66958	66958					0.044786516946601296
VSISFTATK	9	Unmodified	_VSISFTATK_					0	0	0			REV__ENSG00000141543|ENST00000649764|EIF4A3	REV__ENSG00000141543|ENST00000649764|EIF4A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.7406005859375	2	477.26875	952.522947	0.043124	2.0582E-05	-0.05338	-2.5477E-05	-0.010256	-4.895E-06	477.26856987963725	29.644	0.69474	29.657	29.248	29.943	0.013474					41	23	2	0	0	0	0.20881	1	5236	5236		21.537	0	1	97708	+		54676	16082	31314	31315	66959	66959					0.044786516946601296
VSISIETNQV	10	Unmodified	_VSISIETNQV_					0	0	0			REV__nc|ENSG00000169894|Q02505-2|MUC3A	REV__nc|ENSG00000169894|Q02505-2|MUC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.8056640625	2	545.292953	1088.57135	0.27078	0.00014766	1.3448	0.00073332	1.6156	0.00088098	545.2936794154216	23.348	0.58919	23.348	23.11	23.699	0					29	20	2	0	0	0	0.38773	1	3462	3462		5.7319	0.43497	1	93022	+		54677	17549	31315	31316	66960	66960					0.03061100543914108
VSITQIQEG	9	Unmodified	_VSITQIQEG_					0	0	0			REV__nc|ENSG00000138068|Q6IMI4-2|SULT6B1	REV__nc|ENSG00000138068|Q6IMI4-2|SULT6B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.81597900390625	2	487.761289	973.508025	0.03547	1.7301E-05	0.090907	4.4341E-05	0.12638	6.1642E-05	487.7612882183093	28.492	0.5292	28.493	28.215	28.745	0.0004673					26	18	2	0	0	0	0.2322	1	5016	5016		20.454	4.6064	1	147730	+		54678	15898	31316	31317	66961	66961					0.02021159826665553
VSIYKYEDIF	10	Unmodified	_VSIYKYEDIF_					0	0	0		ENSG00000260230|ENST00000561981|FRRS1L	ENSG00000260230|ENST00000561981|FRRS1L	ENSG00000260230|ENST00000561981|FRRS1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.22039794921875	3	426.220178	1275.63871	-0.18916	-8.0625E-05	0.47051	0.00020054	0.28135	0.00011992	426.2204374216413	26.483	1.2128	26.445	25.985	27.198	-0.038671					105	42	4	0	0	0	0.35267	1	4364	4364		12.175	0.65687	1	1101800			54679	8651	31317	31318	66962	66962					0.011911307548189143
VSKAMEYMF	9	Unmodified	_VSKAMEYMF_					0	0	0		nc|ENSG00000163002|Q8NFH5-3|NUP35;nc|ENSG00000163002|Q8NFH5-2|NUP35;ENSG00000163002|ENST00000295119|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	nc|ENSG00000163002|Q8NFH5-3|NUP35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8302001953125	2	553.256471	1104.49839	0.46824	0.00025906	3.3625	0.0018603	3.8308	0.0021194	553.758127062388	82.718	1.2851	82.791	82.494	83.779	0.073097					86	49	3	0	0	0	0.22674	1	21735	21735		17.113	12.784	1	262820			54680	5640	31318	31319	66963	66963					-0.049680677747346635
VSKARKPP	8	Unmodified	_VSKARKPP_					0	0	0		nc|ENSG00000022267|Q13642|FHL1	nc|ENSG00000022267|Q13642|FHL1	nc|ENSG00000022267|Q13642|FHL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.5735778808594	2	441.779619	881.544686	-0.13097	-5.786E-05	0.59261	0.0002618	0.46164	0.00020394	441.78016334820757	14.851	0.25912	14.741	14.618	14.877	-0.10981					13	8	2	0	0	0	0.344	1	825	825		2.5775	0	1	15075			54681	12566	31319	31320	66964	66964					0.09917501233894654
VSKDAVIVKQE	11	Unmodified	_VSKDAVIVKQE_					0	0	0		nc|ENSG00000204334|A1L162|ERICH2;ENSG00000204334|ENST00000697325|ERICH2	nc|ENSG00000204334|A1L162|ERICH2	nc|ENSG00000204334|A1L162|ERICH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5440368652344	3	405.902961	1214.68705	0.11023	4.4742E-05	-3.2385	-0.0013145	-3.1283	-0.0012698	405.90221493571386	35.921	0.15393	36.007	35.931	36.085	0.086246					6	5	2	0	0	0	0.32787	1	7239	7239		14.171	9.4548	1	120270			54682	8216	31320	31321	66965	66965					0.088296243947525
VSKDAVIVKQE	11	Unmodified	_VSKDAVIVKQE_					0	0	0		nc|ENSG00000204334|A1L162|ERICH2;ENSG00000204334|ENST00000697325|ERICH2	nc|ENSG00000204334|A1L162|ERICH2	nc|ENSG00000204334|A1L162|ERICH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	405.902961	1214.68705	0.015441	6.2674E-06	1.3308	0.00054017	1.3462	0.00054644	406.2392937122705	36.359	0.14048	36.359	36.307	36.447	0	0.17587	0.0046674	NaN	14.171	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162000			54683	8216	31320	31321							0.088296243947525
VSKDLNEQFK	10	Unmodified	_VSKDLNEQFK_					0	0	0		ENSG00000055130|ENST00000325222|CUL1;CUL1|p.T552Nfs*28|1|0.3|ENSG00000055130|chr7:148789807-148789807|C/-|frameshift_variant	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.8878173828125	3	403.215427	1206.62445	-0.27846	-0.00011228	-0.68116	-0.00027466	-0.95963	-0.00038694	403.21514378943596	15.965	0.83723	15.965	15.624	16.461	0					50	29	2	0	0	0	0.32033	1	1270	1270		3.5871	1.8448	1	499940			54684	700	31321	31322	66966	66966					0.02940478326536322
VSKDLNEQFK	10	Unmodified	_VSKDLNEQFK_					0	0	0		ENSG00000055130|ENST00000325222|CUL1;CUL1|p.T552Nfs*28|1|0.3|ENSG00000055130|chr7:148789807-148789807|C/-|frameshift_variant	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.8879089355469	3	403.215427	1206.62445	-0.37749	-0.00015221	-0.47353	-0.00019093	-0.85102	-0.00034314	403.2152646248937	16.046	0.9742	15.931	15.663	16.638	-0.11434					56	33	3	0	0	0	0.32033	1	1305	1305		1.7423	0	1	406860			54685	700	31321	31322	66967	66967					0.02940478326536322
VSKDQRSV	8	Unmodified	_VSKDQRSV_					0	0	0		BTN3A1|p.E357K|1|0.17|ENSG00000026950|chr6:26413219-26413219|G/A|missense_variant	BTN3A1|p.E357K|1|0.17|ENSG00000026950|chr6:26413219-26413219|G/A|missense_variant	BTN3A1|p.E357K|1|0.17|ENSG00000026950|chr6:26413219-26413219|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.77392578125	2	459.753798	917.493044	0.032384	1.4889E-05	0.99707	0.00045841	1.0295	0.0004733	459.7541184460418	24.869	0.75761	24.869	24.395	25.153	0					37	25	2	0	0	0	0.33661	1	3845	3845		19.257	5.3509	1	88239			54686	83	31322	31323	66968	66968					0.030997127493378684
VSKDQRSV	8	Unmodified	_VSKDQRSV_					0	0	0		BTN3A1|p.E357K|1|0.17|ENSG00000026950|chr6:26413219-26413219|G/A|missense_variant	BTN3A1|p.E357K|1|0.17|ENSG00000026950|chr6:26413219-26413219|G/A|missense_variant	BTN3A1|p.E357K|1|0.17|ENSG00000026950|chr6:26413219-26413219|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.77386474609375	2	459.753798	917.493044	-0.014165	-6.5125E-06	0.49037	0.00022545	0.47621	0.00021894	459.75394230812304	24.888	0.50548	24.832	24.628	25.134	-0.055931					27	17	2	0	0	0	0.32099	1	3921	3921		25.399	8.457	1	108210			54687	83	31322	31323	66969	66969					0.030997127493378684
VSKDQRSV	8	Unmodified	_VSKDQRSV_					0	0	0		BTN3A1|p.E357K|1|0.17|ENSG00000026950|chr6:26413219-26413219|G/A|missense_variant	BTN3A1|p.E357K|1|0.17|ENSG00000026950|chr6:26413219-26413219|G/A|missense_variant	BTN3A1|p.E357K|1|0.17|ENSG00000026950|chr6:26413219-26413219|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.77392578125	2	459.753798	917.493044	-0.15438	-7.0978E-05	1.1021	0.00050669	0.94772	0.00043572	459.7541006865313	24.901	0.60966	24.869	24.571	25.181	-0.03141					42	20	3	0	0	0	0.31617	1	3874	3874		26.884	5.137	1	105530			54688	83	31322	31323	66970	66970					0.030997127493378684
VSKECAEKI	9	Unmodified	_VSKECAEKI_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1;nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.7655029296875	2	503.765517	1005.51648	0.10241	5.1589E-05	-0.022504	-1.1337E-05	0.079902	4.0252E-05	503.7655554960019	23.061	1.0329	23.061	22.736	23.769	0					95	35	4	0	0	0	0.29176	1	3436	3436		10.074	0	1	765100			54689	444	31323	31324	66971	66971					0.013943904716484212
VSKECAEKI	9	Unmodified	_VSKECAEKI_					0	0	0		ENSG00000011454|ENST00000373647|RABGAP1;nc|ENSG00000188394|Q9Y3P9-2|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	ENSG00000011454|ENST00000373647|RABGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.76568603515625	2	503.765517	1005.51648	0.28081	0.00014146	-0.073607	-3.7081E-05	0.2072	0.00010438	503.7654550971239	23.14	1.112	23.096	22.76	23.872	-0.044867					104	38	4	0	0	0	0.29638	1	3471	3471		9.3831	2.0939	1	846530			54690	444	31323	31324	66972	66972					0.013943904716484212
VSKEDRSI	8	Unmodified	_VSKEDRSI_					0	0	0			REV__nc|ENSG00000152520|Q58A45-2|PAN3	REV__nc|ENSG00000152520|Q58A45-2|PAN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.25347900390625	2	467.253631	932.49271	0.17691	8.266E-05	-0.23786	-0.00011114	-0.060957	-2.8482E-05	467.25341962491694	26.161	0.83315	26.138	25.867	26.7	-0.022236					69	29	4	0	0	0	0.40115	1	4328	4328		19.257	1.1106	1	882030	+		54691	16583	31324	31325	66973	66973					0.023762930294765283
VSKELQAA	8	Unmodified	_VSKELQAA_					0	0	0		CON__Q03247	CON__Q03247	CON__Q03247	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.2393798828125	2	423.239993	844.465432	0.16019	6.78E-05	-0.70446	-0.00029816	-0.54427	-0.00023036	423.23959851106605	21.159	0.91954	21.049	20.753	21.673	-0.11003					77	32	3	0	0	0	0.44389	1	2824	2824		7.9102	0	1	293250		+	54692	221	31325	31326	66974	66974					0.03697809489085557
VSKEVSEMILD	11	Unmodified	_VSKEVSEMILD_					0	0	0		ENST00000584437.5_1_17:56494644-56494767:-|nuORF;ENST00000580014.1_1_17:56494486-56494767:-|nuORF	ENST00000584437.5_1_17:56494644-56494767:-|nuORF	ENST00000584437.5_1_17:56494644-56494767:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.2166442871094	3	417.216328	1248.62715	-0.18714	-7.8076E-05	0.76445	0.00031894	0.57732	0.00024087	417.2166589908274	18.564	0.7874	18.506	18.199	18.986	-0.058174					59	27	4	0	0	0	0.46475	1	2006	2006		1.1098	0	1	398890			54693	12072	31326	31327	66975	66975					0.012785656692130942
VSKGSTVLP	9	Unmodified	_VSKGSTVLP_					0	0	0			REV__nc|ENSG00000186818|Q8NHJ6-2|LILRB4	REV__nc|ENSG00000186818|Q8NHJ6-2|LILRB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	444.2701721191406	2	444.263468	886.512382	0.22565	0.00010025	-0.80391	-0.00035715	-0.57826	-0.0002569	444.26313468285593	37.562	0.65521	37.65	37.218	37.873	0.087406					48	23	3	0	0	0	0.25202	1	7813	7813		10.824	4.1008	1	367820	+		54694	18471	31327	31328	66976	66976					0.06458669040239329
VSKHFRKGFR	10	Unmodified	_VSKHFRKGFR_					0	0	0		ENSG00000182687|ENST00000329003|GALR2	ENSG00000182687|ENST00000329003|GALR2	ENSG00000182687|ENST00000329003|GALR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.8962097167969	3	421.247396	1260.72036	0.24494	0.00010318	-0.118	-4.9709E-05	0.12694	5.3473E-05	421.2474472199448	40.26	0.67008	40.353	39.967	40.637	0.09267					55	23	3	0	0	0	0.26213	1	8630	8630		19.987	7.7593	1	443510			54695	7311	31328	31329	66977	66977					0.1004271574795439
VSKHFRKGFR	10	Unmodified	_VSKHFRKGFR_					0	0	0		ENSG00000182687|ENST00000329003|GALR2	ENSG00000182687|ENST00000329003|GALR2	ENSG00000182687|ENST00000329003|GALR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.89630126953125	3	421.247396	1260.72036	0.20194	8.5068E-05	0.020924	8.8144E-06	0.22287	9.3882E-05	421.2474307183662	40.268	0.65599	40.367	40.01	40.666	0.099407					49	23	3	0	0	0	0.30815	1	8521	8521		9.2438	6.4005	1	479350			54696	7311	31328	31329	66978	66978					0.1004271574795439
VSKHKRHK	8	Unmodified	_VSKHKRHK_					0	0	0		nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.S1017Ffs*5|1|0.07|ENSG00000167258|chr17:39520040-39520041|-/TTCTCAAATTTGTA|frameshift_variant;CDK12|p.I1188Tfs*27|1|0.35|ENSG00000167258|chr17:39526119-39526119|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2783203125	2	510.314692	1018.61483	0.24331	0.00012417	-1.0752	-0.00054869	-0.83189	-0.00042452	510.31390545401683	19.95	0.30119	19.95	19.685	19.986	0					13	10	2	0	0	0	0.344	1	2382	2382		2.5775	0	1	32562			54697	6163	31329	31330	66979	66979					0.10626799622355065
VSKHKRHK	8	Unmodified	_VSKHKRHK_					0	0	0		nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.S1017Ffs*5|1|0.07|ENSG00000167258|chr17:39520040-39520041|-/TTCTCAAATTTGTA|frameshift_variant;CDK12|p.I1188Tfs*27|1|0.35|ENSG00000167258|chr17:39526119-39526119|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2783508300781	2	510.314692	1018.61483	0.44848	0.00022887	-1.3642	-0.00069619	-0.91575	-0.00046732	510.31373175460857	19.932	0.35738	19.877	19.705	20.062	-0.055693					17	12	2	0	0	0	0.344	1	2404	2404		2.5775	0.27475	1	29763			54698	6163	31329	31330	66980	66980					0.10626799622355065
VSKKDEIEL	9	Unmodified	_VSKKDEIEL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;ENST00000477620.5_1_7:135320372-135330929:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2369995117188	2	530.797872	1059.58119	-0.65211	-0.00034614	1.7922	0.00095128	1.1401	0.00060514	530.7985571876904	34.65	0.50539	34.65	34.362	34.868	0					27	17	2	0	0	0	0.25779	1	6900	6900		6.2058	1.8765	1	145140			54699	5182	31330	31331	66981	66981					0.05378288549286481
VSKKDEIEL	9	Unmodified	_VSKKDEIEL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205;ENST00000477620.5_1_7:135320372-135330929:+|nuORF	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	530.797872	1059.58119	-0.01619	-8.5936E-06	0.28411	0.00015081	0.26792	0.00014221	530.7983315362095	34.454	0.39596	34.531	34.308	34.704	0.077377	-0.058953	-0.00085592	NaN	6.2058	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130640			54700	5182	31330	31331							0.05378288549286481
VSKLKAELLLL	11	Unmodified	_VSKLKAELLLL_					0	0	0			REV__ENST00000507562.1_1_5:148725314-148730842:+|nuORF	REV__ENST00000507562.1_1_5:148725314-148730842:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.6079406738281	3	409.607596	1225.80096	-0.012423	-5.0885E-06	0.82565	0.00033819	0.81323	0.00033311	409.60841977764244	52.372	3.9108	52.372	51.997	55.907	0					445	143	6	0	0	0	0.39698	2	13131	13131;13179		11.631	8.2864	1	99351000	+		54701	17144	31331	31332	66982;66983	66982					0.19709139227666128
VSKLKAELLLL	11	Unmodified	_VSKLKAELLLL_					0	0	0			REV__ENST00000507562.1_1_5:148725314-148730842:+|nuORF	REV__ENST00000507562.1_1_5:148725314-148730842:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.60784912109375	3	409.607596	1225.80096	0.16529	6.7705E-05	0.70603	0.0002892	0.87132	0.0003569	409.6083823483185	52.347	3.1865	52.397	52.009	55.196	0.050575					383	118	5	0	0	0	0.41517	1	13139	13139		9.2438	9.2438	1	96925000	+		54702	17144	31331	31332	66984	66984					0.19709139227666128
VSKLKAELLLL	11	Unmodified	_VSKLKAELLLL_					0	0	0			REV__ENST00000507562.1_1_5:148725314-148730842:+|nuORF	REV__ENST00000507562.1_1_5:148725314-148730842:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.6083068847656	3	409.607596	1225.80096	0.011884	4.8677E-06	0.84608	0.00034656	0.85796	0.00035143	409.60840964174287	52.584	3.3326	52.583	52.194	55.526	-0.00080872					397	122	6	0	0	0	0.42246	1	13135	13135		8.2864	2.4183	1	92153000	+		54703	17144	31331	31332	66985	66985					0.19709139227666128
VSKLKAKKIA	10	Unmodified	_VSKLKAKKIA_					0	0	0			REV__ENSG00000126215|ENST00000555055|XRCC3	REV__ENSG00000126215|ENST00000555055|XRCC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7775268554688	2	543.373884	1084.73321	0.22444	0.00012195	0.11429	6.2101E-05	0.33873	0.00018406	543.3740257765439	13.153	0.14412	13.054	12.953	13.097	-0.099291					9	4	3	0	0	0	0.32176	1	323	323		0	0	1	24374	+		54704	15302	31332	31333	66986	66986					0.19423734087513367
VSKLKAKKIA	10	Unmodified	_VSKLKAKKIA_					0	0	0			REV__ENSG00000126215|ENST00000555055|XRCC3	REV__ENSG00000126215|ENST00000555055|XRCC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.777099609375	2	543.373884	1084.73321	0.17776	9.6592E-05	0.23885	0.00012978	0.41661	0.00022638	543.8755156499536	13.128	0.16884	13.06	12.965	13.134	-0.067496					10	5	2	0	0	0	0.32176	1	309	309		0	0	1	37807	+		54705	15302	31332	31333	66987	66987					0.19423734087513367
VSKLKAKKIA	10	Unmodified	_VSKLKAKKIA_					0	0	0			REV__ENSG00000126215|ENST00000555055|XRCC3	REV__ENSG00000126215|ENST00000555055|XRCC3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	543.373884	1084.73321	0.13175	7.159E-05	0.3214	0.00017464	0.45315	0.00024623	543.875589359383	13.089	0.17095	13.089	13.003	13.174	0	0.02131	0.0001313	NaN	0	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26386	+		54706	15302	31332	31333							0.19423734087513367
VSKLLRKY	8	Unmodified	_VSKLLRKY_					0	0	0			REV__nc|ENSG00000136051|Q2M389-2|WASHC4	REV__nc|ENSG00000136051|Q2M389-2|WASHC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.28125	2	503.824027	1005.6335	0.02987	1.5049E-05	0.61454	0.00030962	0.64441	0.00032467	503.8244782103836	14.763	0.31198	14.763	14.561	14.873	0					15	10	2	0	0	0	0.344	1	856	856		2.5775	0	1	23546	+		54707	15785	31333	31334	66988	66988					0.13090916473561265
VSKLWSGRRSF	11	Unmodified	_VSKLWSGRRSF_					0	0	0			REV__ENST00000515655.5_1_4:89152244-89152391:-|nuORF	REV__ENST00000515655.5_1_4:89152244-89152391:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.5823669433594	3	441.582444	1321.7255	0.33475	0.00014782	-0.29718	-0.00013123	0.037567	1.6589E-05	441.5821334425331	29.653	0.59311	29.653	29.324	29.917	0					47	20	3	0	0	0	0.41517	1	5327	5327		9.2438	0	1	251110	+		54708	21847	31334	31335	66989	66989					0.07750974819919065
VSKPHSTAIT	10	Unmodified	_VSKPHSTAIT_					0	0	0			REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2100219726562	2	520.790381	1039.56621	0.18786	9.7836E-05	-0.31309	-0.00016305	-0.12523	-6.5219E-05	520.7900579700737	22.954	0.36848	22.954	22.708	23.077	0					20	12	2	0	0	0	0.31889	1	3295	3295		6.2058	0	1	73451	+		54709	13393	31335	31336	66990	66990					0.04800841471910644
VSKPHSTAIT	10	Unmodified	_VSKPHSTAIT_					0	0	0			REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2101440429688	2	520.790381	1039.56621	0.30307	0.00015784	-0.73399	-0.00038225	-0.43091	-0.00022442	520.7900951295485	23.069	0.45832	23.024	22.847	23.305	-0.044867					27	16	2	0	0	0	0.31691	1	3308	3308		9.3831	1.2276	1	37069	+		54710	13393	31335	31336	66991	66991					0.04800841471910644
VSKQAPPI	8	Unmodified	_VSKQAPPI_					0	0	0			REV__PLEKHA6|p.V328Yfs*172|1|0.3|ENSG00000143850|chr1:204259283-204259283|C/-|frameshift_variant	REV__PLEKHA6|p.V328Yfs*172|1|0.3|ENSG00000143850|chr1:204259283-204259283|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.2528381347656	2	420.252903	838.491253	0.083943	3.5277E-05	-0.23515	-9.8822E-05	-0.15121	-6.3544E-05	420.25275865929376	37.546	0.72893	37.639	37.331	38.06	0.093014					69	26	4	0	0	0	0.29855	1	7758	7758		12.532	0	1	1079500	+		54711	16206	31336	31337	66992	66992					0.06554703731353584
VSKQSLVT	8	Unmodified	_VSKQSLVT_					0	0	0			REV__ENSG00000167971|ENST00000343516|CASKIN1	REV__ENSG00000167971|ENST00000343516|CASKIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8880920410156	2	431.255643	860.496732	-0.34595	-0.00014919	0.095325	4.1109E-05	-0.25062	-0.00010808	431.25563216133395	29.998	1.0826	30.021	29.723	30.806	0.02297					70	37	2	0	0	0	0.34198	1	5545	5545		6.7232	0	1	1531500	+		54712	17424	31337	31338	66993	66993					0.06090382523200333
VSKRADDFKEK	11	Unmodified	_VSKRADDFKEK_					0	0	0		nc|ENSG00000163576|Q8N7U6-2|EFHB;ENST00000498089.1_1_3:19936277-19975510:-|nuORF;nc|ENSG00000163576|Q8N7U6-3|EFHB;ENSG00000163576|ENST00000295824|EFHB	nc|ENSG00000163576|Q8N7U6-2|EFHB	nc|ENSG00000163576|Q8N7U6-2|EFHB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.5736999511719	3	441.573614	1321.69901	-0.14348	-6.3359E-05	0.36045	0.00015916	0.21696	9.5805E-05	441.5737305414947	14.508	0.25762	14.508	14.365	14.623	0					15	8	2	0	0	0	0.45202	1	753	753		4.4062	0	1	177100			54713	5704	31338	31339	66994	66994					0.05103241137931036
VSKRADDFKEK	11	Unmodified	_VSKRADDFKEK_					0	0	0		nc|ENSG00000163576|Q8N7U6-2|EFHB;ENST00000498089.1_1_3:19936277-19975510:-|nuORF;nc|ENSG00000163576|Q8N7U6-3|EFHB;ENSG00000163576|ENST00000295824|EFHB	nc|ENSG00000163576|Q8N7U6-2|EFHB	nc|ENSG00000163576|Q8N7U6-2|EFHB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.5736083984375	3	441.573614	1321.69901	-0.13916	-6.1451E-05	0.29061	0.00012833	0.15144	6.6874E-05	441.5737101375325	14.707	0.3285	14.641	14.4	14.729	-0.066067					21	11	2	0	0	0	0.45202	1	815	815		4.4062	0	1	182890			54714	5704	31338	31339	66995	66995					0.05103241137931036
VSKRRRPQYK	10	Unmodified	_VSKRRRPQYK_					0	0	0			REV__ENSG00000125398|ENST00000245479|SOX9	REV__ENSG00000125398|ENST00000245479|SOX9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.54620361328125	3	439.933588	1316.77894	0.24716	0.00010873	-0.43415	-0.000191	-0.18699	-8.2265E-05	439.933305960523	26.779	0.44677	26.767	26.595	27.042	-0.01156					25	15	2	0	0	0	0.32068	1	4453	4453		3.5871	0.74377	1	71186	+		54715	15263	31339	31340	66996	66996					0.1332177232243339
VSKSDLGRK	9	Unmodified	_VSKSDLGRK_					0	0	0		ENSG00000104980|ENST00000270538|TIMM44	ENSG00000104980|ENST00000270538|TIMM44	ENSG00000104980|ENST00000270538|TIMM44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.7718200683594	2	495.290548	988.566543	0.13252	6.5635E-05	-0.18875	-9.3488E-05	-0.056236	-2.7853E-05	495.2903372813259	14.658	0.25554	14.554	14.396	14.651	-0.10466					20	8	3	0	0	0	0.21538	1	786	786		26.268	4.678	1	265160			54716	1944	31340	31341	66997	66997					0.07180261191808768
VSKSLELHQ	9	Unmodified	_VSKSLELHQ_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7903442382812	2	520.790381	1039.56621	0.14625	7.6164E-05	0.28689	0.00014941	0.43314	0.00022557	520.7904865438966	25.878	0.93002	25.84	25.531	26.461	-0.038671					60	32	2	0	0	0	0.29176	1	4161	4161		10.074	0.6908	1	268830			54717	7427	31341	31342	66998	66998					0.048008414719333814
VSKSLELHQ	9	Unmodified	_VSKSLELHQ_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	520.790381	1039.56621	0.26948	0.00014035	0.35854	0.00018672	0.62802	0.00032707	520.7905296654272	25.833	1.0539	25.833	25.504	26.558	0	-0.031425	3.7926E-05	NaN	10.074	72	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225490			54718	7427	31341	31342							0.048008414719333814
VSKSLELHQ	9	Unmodified	_VSKSLELHQ_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	520.790381	1039.56621	0.24401	0.00012708	0.32503	0.00016928	0.56904	0.00029635	520.7904853089673	25.942	1.0057	25.92	25.496	26.502	-0.022238	0.0559	3.0324E-06	NaN	10.074	65	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271430			54719	7427	31341	31342							0.048008414719333814
VSKWLVIW	8	Unmodified	_VSKWLVIW_					0	0	0			REV__ENST00000324106.8_1_2:204591403-204591589:+|nuORF	REV__ENST00000324106.8_1_2:204591403-204591589:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2592163085938	2	515.807845	1029.60114	-0.025279	-1.3039E-05	-0.94752	-0.00048874	-0.9728	-0.00050178	515.807395657227	12.489	0.63735	12.392	12.122	12.76	-0.096607					40	21	3	0	0	0	0.34408	1	247	247		2.3027	2.3027	1	142900	+		54720	19984	31342	31343	66999	66999					0.08752129070558112
VSKYFRSRMS	10	Unmodified	_VSKYFRSRMS_					0	0	0		MER21B_dup2052|chr14:22174158-22174720:-|1.413949278665236|0.0429644055871873|5.04|520.0|36|2|anti-sense	MER21B_dup2052|chr14:22174158-22174720:-|1.413949278665236|0.0429644055871873|5.04|520.0|36|2|anti-sense	MER21B_dup2052|chr14:22174158-22174720:-|1.413949278665236|0.0429644055871873|5.04|520.0|36|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.9347839355469	3	420.888768	1259.64448	0.1542	6.4901E-05	0.43973	0.00018508	0.59393	0.00024998	420.88881098672107	32.642	0.86637	32.642	32.199	33.065	0					63	30	3	0	0	0	0.32054	1	6130	6130		1.5923	0.37745	1	363620			54721	12528	31343	31344	67000	67000					0.025039507855353804
VSLAPQKGG	9	Unmodified	_VSLAPQKGG_					0	0	0		ENST00000485767.1_1_9:124072835-124073156:+|nuORF	ENST00000485767.1_1_9:124072835-124073156:+|nuORF	ENST00000485767.1_1_9:124072835-124073156:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	429.2401123046875	2	428.747985	855.481417	-0.043303	-1.8566E-05	0.14312	6.1364E-05	0.09982	4.2798E-05	428.74813155611315	20.326	0.46534	20.326	20.157	20.622	0					22	16	2	0	0	0	0.18803	1	2531	2531		25.399	1.3787	1	222510			54722	11096	31344	31345	67001	67001					0.04789515725997262
VSLAPQKGG	9	Unmodified	_VSLAPQKGG_					0	0	0		ENST00000485767.1_1_9:124072835-124073156:+|nuORF	ENST00000485767.1_1_9:124072835-124073156:+|nuORF	ENST00000485767.1_1_9:124072835-124073156:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	429.2405090332031	2	428.747985	855.481417	0.16661	7.1432E-05	-0.05188	-2.2244E-05	0.11473	4.9188E-05	428.7481181635739	20.522	0.5412	20.412	20.188	20.729	-0.11003					32	19	2	0	0	0	0.18803	2	2545	2545;2597		25.399	1.3787	1	219810			54723	11096	31344	31345	67002;67003	67002					0.04789515725997262
VSLAPQKGG	9	Unmodified	_VSLAPQKGG_					0	0	0		ENST00000485767.1_1_9:124072835-124073156:+|nuORF	ENST00000485767.1_1_9:124072835-124073156:+|nuORF	ENST00000485767.1_1_9:124072835-124073156:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	429.24017333984375	2	428.747985	855.481417	0.25969	0.00011134	-0.26202	-0.00011234	-0.0023306	-9.9925E-07	428.7479590901662	20.453	0.70869	20.4	20.177	20.886	-0.05291					41	25	3	0	0	0	0.23007	1	2569	2569		19.257	1.1106	1	227400			54724	11096	31344	31345	67004	67004					0.04789515725997262
VSLAQSLSLFI	11	Unmodified	_VSLAQSLSLFI_					0	0	0		ENST00000409549.5_1_2:74780012-74780204:-|nuORF	ENST00000409549.5_1_2:74780012-74780204:-|nuORF	ENST00000409549.5_1_2:74780012-74780204:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3412475585938	2	589.344989	1176.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.78	1	118.78	118.28	119.28	0								0	0	0	0.38137	1	30673	30673		1.0715	0	1				54725	10251	31345	31346	67005	67005					0.09415427371436635
VSLCFHRTQGL	11	Unmodified	_VSLCFHRTQGL_					0	0	0		nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	nc|ENSG00000137275|Q13546-2|RIPK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.9347839355469	3	420.888768	1259.64448	0.091781	3.863E-05	0.49667	0.00020904	0.58845	0.00024767	420.8888376864108	32.524	0.73264	32.579	32.198	32.931	0.054371					54	26	3	0	0	0	0.33119	1	6098	6098		2.6312	0.88896	1	385720			54726	4041	31346	31347	67006	67006					0.025039507855353804
VSLDAVKYR	9	Unmodified	_VSLDAVKYR_					0	0	0			REV__ENST00000492497.1_1_7:102953351-102956256:-|nuORF	REV__ENST00000492497.1_1_7:102953351-102956256:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8192749023438	2	525.800749	1049.58694	0.66527	0.0003498	-2.7742	-0.0014587	-2.109	-0.0011089	525.7986241689831	49.369	0.21603	49.369	49.218	49.434	0					10	7	2	0	0	0	0.24688	1	11324	11324		14.838	10.894	1	128180	+		54727	21624	31347	31348	67007	67007					0.06413431851615314
VSLDSPEREPI	11	Unmodified	_VSLDSPEREPI_					0	0	0		ENSG00000205302|ENST00000379516|SNX2;ENST00000505854.5_1_5:122110798-122139331:+|nuORF	ENSG00000205302|ENST00000379516|SNX2	ENSG00000205302|ENST00000379516|SNX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.5505065917969	3	414.550587	1240.62993	-0.23132	-9.5895E-05	0.45593	0.00018901	0.22461	9.3112E-05	414.5507506861429	19.206	1.0921	19.206	18.923	20.016	0					99	38	5	0	0	0	0.43809	1	2166	2166		6.2344	0	1	232690			54728	8281	31348	31349	67008	67008					0.01924157118378389
VSLDYAISK	9	Unmodified	_VSLDYAISK_					0	0	0		nc|ENSG00000204946|Q6ZMS7-1|ZNF783;ENSG00000204946|ENST00000434415|ZNF783;ENST00000481762.5_1_7:149260692-149318218:-|nuORF;ENST00000493198.5_1_7:149316940-149318218:-|nuORF;ENST00000486492.5_1_7:149255763-149318218:-|nuORF;ENST00000472212.5_1_7:149248897-149318218:-|nuORF;nc|ENSG00000181220|Q6NUN9|ZNF746;nc|ENSG00000181220|Q6NUN9-2|ZNF746;ENSG00000181220|ENST00000458143|ZNF746	nc|ENSG00000204946|Q6ZMS7-1|ZNF783	nc|ENSG00000204946|Q6ZMS7-1|ZNF783	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2742919921875	2	498.274032	994.533512	0.33473	0.00016679	0.43288	0.00021569	0.76761	0.00038248	498.2741673996694	43.77	0.51948	43.77	43.545	44.065	0					39	18	3	0	0	0	0.16039	1	9629	9629		29.437	12.324	1	570080			54729	8262	31349	31350	67009	67009					0.03602634349078926
VSLDYAISK	9	Unmodified	_VSLDYAISK_					0	0	0		nc|ENSG00000204946|Q6ZMS7-1|ZNF783;ENSG00000204946|ENST00000434415|ZNF783;ENST00000481762.5_1_7:149260692-149318218:-|nuORF;ENST00000493198.5_1_7:149316940-149318218:-|nuORF;ENST00000486492.5_1_7:149255763-149318218:-|nuORF;ENST00000472212.5_1_7:149248897-149318218:-|nuORF;nc|ENSG00000181220|Q6NUN9|ZNF746;nc|ENSG00000181220|Q6NUN9-2|ZNF746;ENSG00000181220|ENST00000458143|ZNF746	nc|ENSG00000204946|Q6ZMS7-1|ZNF783	nc|ENSG00000204946|Q6ZMS7-1|ZNF783	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.274032	994.533512	0.44932	0.00022388	0.085817	4.276E-05	0.53514	0.00026664	498.274048701784	43.542	0.45613	43.626	43.41	43.866	0.083996	-0.053916	-2.557E-05	NaN	29.437	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	654390			54730	8262	31349	31350							0.03602634349078926
VSLEIRKKHL	10	Unmodified	_VSLEIRKKHL_					0	0	0			REV__ENSG00000160007|ENST00000672722|ARHGAP35	REV__ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.8998107910156	3	408.25919	1221.75574	0.076739	3.133E-05	1.0885	0.00044437	1.1652	0.0004757	408.2594089348022	52.371	0.92682	52.421	52.009	52.936	0.050571					62	33	3	0	0	0	0.3213	1	12164	12164		0.69767	0	1	621980	+		54731	16873	31350	31351	67010	67010					0.1537333348512675
VSLENLNL	8	Unmodified	_VSLENLNL_					0	0	0		nc|ENSG00000186001|Q96II8-3|LRCH3;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	nc|ENSG00000186001|Q96II8-3|LRCH3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.25286865234375	2	451.2531	900.491647	0.25867	0.00011672	-0.49184	-0.00022194	-0.23317	-0.00010522	451.25281681451935	23.673	0.81865	23.634	23.231	24.049	-0.038927					64	28	3	0	0	0	0.3474	1	3510	3510		25.399	0	1	312390			54732	7580	31351	31352	67011	67011					0.037420786605480316
VSLEVDIYRN	10	Unmodified	_VSLEVDIYRN_					0	0	0		PADI6|p.I599Pfs*3|1|0.14|ENSG00000276747|chr1:17398789-17398790|AC/-|frameshift_variant;ENSG00000276747|ENST00000619609|PADI6	PADI6|p.I599Pfs*3|1|0.14|ENSG00000276747|chr1:17398789-17398790|AC/-|frameshift_variant	PADI6|p.I599Pfs*3|1|0.14|ENSG00000276747|chr1:17398789-17398790|AC/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.8879089355469	3	403.215427	1206.62445	-0.27619	-0.00011136	-0.63163	-0.00025468	-0.90782	-0.00036605	403.2151965598708	16.013	0.85655	15.95	15.638	16.495	-0.062534					54	29	3	0	0	0	0.32033	1	1283	1283		1.7423	0.52744	1	563760			54733	8729	31352	31353	67012	67012					0.029404783265590595
VSLEVLILS	9	Unmodified	_VSLEVLILS_					0	0	0		nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.204833984375	2	486.802426	971.590298	0.90472	0.00044042	0.56121	0.0002732	1.4659	0.00071362	486.80274133358347	50.458	1.0278	50.478	50.177	51.205	0.020691					57	38	2	0	0	0	0.2322	1	11660	11660		20.454	0	1	729530			54734	2163	31353	31354	67013	67013					0.10336681905619116
VSLFFLHAR	9	Unmodified	_VSLFFLHAR_					0	0	0			REV__ENST00000310847.8_1_13:111545156-111545609:-|nuORF	REV__ENST00000310847.8_1_13:111545156-111545609:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3135986328125	2	545.313826	1088.6131	0.57249	0.00031219	-0.45833	-0.00024994	0.11415	6.225E-05	545.3132807343177	31.411	0.27819	31.452	31.281	31.559	0.040989					16	9	2	0	0	0	0.31038	1	5864	5864		7.2892	0.56607	1	218400	+		54735	19896	31354	31355	67014	67014					0.0723374581373264
VSLFFLHAR	9	Unmodified	_VSLFFLHAR_					0	0	0			REV__ENST00000310847.8_1_13:111545156-111545609:-|nuORF	REV__ENST00000310847.8_1_13:111545156-111545609:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	545.313826	1088.6131	0.25707	0.00014018	0.061062	3.3298E-05	0.31813	0.00017348	545.3136219327326	31.504	0.30245	31.504	31.333	31.636	0	0.03134	0.00024208	NaN	7.2892	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205640	+		54736	19896	31354	31355							0.0723374581373264
VSLFFLHAR	9	Unmodified	_VSLFFLHAR_					0	0	0			REV__ENST00000310847.8_1_13:111545156-111545609:-|nuORF	REV__ENST00000310847.8_1_13:111545156-111545609:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	545.313826	1088.6131	0.39285	0.00021422	-0.57472	-0.0003134	-0.18187	-9.9176E-05	545.3132683982343	31.421	0.35625	31.463	31.296	31.652	0.042366	-0.010049	-0.00045132	NaN	7.2892	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253580	+		54737	19896	31354	31355							0.0723374581373264
VSLFFLHAR	9	Unmodified	_VSLFFLHAR_					0	0	0			REV__ENST00000310847.8_1_13:111545156-111545609:-|nuORF	REV__ENST00000310847.8_1_13:111545156-111545609:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	545.313826	1088.6131	0.57249	0.00031219	-0.45833	-0.00024994	0.11415	6.225E-05	545.3132807343177	31.411	0.27819	31.452	31.281	31.559	0.040989	-0.021291	-0.00032439	NaN	7.2892	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218400	+		54738	19896	31354	31355							0.0723374581373264
VSLFLPAAL	9	Unmodified	_VSLFLPAAL_					0	0	0		ENST00000328933.9_1_22:39780264-39780798:+|nuORF	ENST00000328933.9_1_22:39780264-39780798:+|nuORF	ENST00000328933.9_1_22:39780264-39780798:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7868957519531	2	465.786579	929.558604	0.41157	0.0001917	0.44721	0.00020831	0.85878	0.00040001	465.78676019208797	84.919	0.63903	84.906	84.557	85.196	-0.01284					46	25	2	0	0	0	0.23775	1	22268	22268		18.135	0	1	241100			54739	9435	31355	31356	67015	67015					0.09100733942329953
VSLGAESIYL	10	Unmodified	_VSLGAESIYL_					0	0	0		ENST00000309859.8_1_16:23478376-23478613:-|nuORF	ENST00000309859.8_1_16:23478376-23478613:-|nuORF	ENST00000309859.8_1_16:23478376-23478613:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8192749023438	2	526.28714	1050.55973	0.34481	0.00018147	0.25367	0.0001335	0.59848	0.00031497	526.2872126985666	49.121	0.56773	49.153	48.954	49.522	0.032043					32	19	2	0	0	0	0.28434	1	11320	11320		25.399	6.1423	1	281430			54740	9305	31356	31357	67016	67016					0.03646903520575506
VSLGITAAGI	10	Unmodified	_VSLGITAAGI_					0	0	0			REV__ENSG00000073734|ENST00000650372|ABCB11	REV__ENSG00000073734|ENST00000650372|ABCB11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.8846740722656	2	451.271293	900.528032	0.11749	5.3021E-05	0.50592	0.00022831	0.62342	0.00028133	451.2714997141387	41.156	0.47826	41.246	40.978	41.456	0.090248					31	17	2	0	0	0	0.20505	1	8818	8818		32.786	5.1569	1	321920	+		54741	13780	31357	31358	67017	67017					0.07378955557271638
VSLGLAVSK	9	Unmodified	_VSLGLAVSK_					0	0	0		ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENSG00000018869|ENST00000586929|ZNF582;ENSG00000197566|ENST00000311331|ZNF624	ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENST00000534277.5_1_16:31724760-31767037:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2735900878906	2	437.273835	872.533118	-0.1413	-6.1785E-05	0.14049	6.1433E-05	-0.00080532	-3.5215E-07	437.2738836553783	41.425	0.42943	41.425	41.125	41.555	0					35	15	3	0	0	0	0.0016724	1	8883	8883		114.19	0	1	950560			54742	11656	31358	31359	67018	67018					0.0917525941989652
VSLGLAVSK	9	Unmodified	_VSLGLAVSK_					0	0	0		ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENSG00000018869|ENST00000586929|ZNF582;ENSG00000197566|ENST00000311331|ZNF624	ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENST00000534277.5_1_16:31724760-31767037:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.9166564941406	2	437.273835	872.533118	-0.083822	-3.6653E-05	0.15395	6.7318E-05	0.070127	3.0665E-05	437.27380587983976	41.268	0.40356	41.358	41.135	41.539	0.090248					33	14	3	0	0	0	0.19208	1	8909	8909		27.223	0	1	1065700			54743	11656	31358	31359	67019	67019					0.0917525941989652
VSLGLAVSK	9	Unmodified	_VSLGLAVSK_					0	0	0		ENST00000534277.5_1_16:31724760-31767037:+|nuORF;ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ENSG00000197302|ENST00000316491|KRBOX5;ENST00000529943.6_1_16:31724760-31765604:+|nuORF;ENSG00000018869|ENST00000586929|ZNF582;ENSG00000197566|ENST00000311331|ZNF624	ENST00000534277.5_1_16:31724760-31767037:+|nuORF	ENST00000534277.5_1_16:31724760-31767037:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.2736511230469	2	437.273835	872.533118	-0.0065976	-2.885E-06	0.08914	3.8979E-05	0.082543	3.6094E-05	437.27375379652665	41.199	0.51694	41.295	41.04	41.557	0.096626					36	18	3	0	0	0	0.016571	1	8875	8875		69.338	0	1	1056300			54744	11656	31358	31359	67020	67020					0.0917525941989652
VSLGLVVSK	9	Unmodified	_VSLGLVVSK_					0	0	0		ENSG00000185947|ENST00000300870|ZNF267;ENST00000566541.5_3_16:31886566-31901532:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267	ENSG00000185947|ENST00000300870|ZNF267	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7706298828125	2	451.289485	900.564418	0.22403	0.0001011	-2.9842	-0.0013467	-2.7602	-0.0012456	451.2878760786195	46.652	0.35374	46.652	46.487	46.84	0					28	12	3	0	0	0	0.23216	1	10524	10524		22.658	0	1	713290			54745	7571	31359	31360	67021	67021					0.11015832453995245
VSLGLVVSK	9	Unmodified	_VSLGLVVSK_					0	0	0		ENSG00000185947|ENST00000300870|ZNF267;ENST00000566541.5_3_16:31886566-31901532:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267	ENSG00000185947|ENST00000300870|ZNF267	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.7705078125	2	451.289485	900.564418	0.37153	0.00016767	-1.7269	-0.00077934	-1.3554	-0.00061167	451.28848382878306	46.587	0.43404	46.64	46.467	46.901	0.052574					35	15	4	0	0	0	0.22695	1	10537	10537		24.882	0	1	930700			54746	7571	31359	31360	67022	67022					0.11015832453995245
VSLGLVVSK	9	Unmodified	_VSLGLVVSK_					0	0	0		ENSG00000185947|ENST00000300870|ZNF267;ENST00000566541.5_3_16:31886566-31901532:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267	ENSG00000185947|ENST00000300870|ZNF267	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7704162597656	2	451.289485	900.564418	0.17665	7.9722E-05	-1.0199	-0.00046027	-0.84326	-0.00038055	451.2887698296753	46.597	0.52115	46.651	46.516	47.037	0.054371					35	17	3	0	0	0	0.18733	1	10519	10519		29.437	0	1	945590			54747	7571	31359	31360	67023	67023					0.11015832453995245
VSLGVCIQKL	10	Unmodified	_VSLGVCIQKL_					0	0	0			REV__ENST00000583907.1_1_17:26743951-26744507:+|nuORF	REV__ENST00000583907.1_1_17:26743951-26744507:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3246459960938	2	530.315177	1058.6158	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.506	1	19.39	18.89	19.89	-0.11592								0	0	0	0.37157	1	2257	2257		5.7319	0	1		+		54748	22500	31360	31361	67024	67024					0.08883833156369292
VSLGVSAVGL	10	Unmodified	_VSLGVSAVGL_					0	0	0		ENST00000514882.5_1_5:10683562-10761180:-|nuORF	ENST00000514882.5_1_5:10683562-10761180:-|nuORF	ENST00000514882.5_1_5:10683562-10761180:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.884521484375	2	451.271293	900.528032	0.0076943	3.4722E-06	0.61836	0.00027905	0.62605	0.00028252	451.27134558101903	41.261	0.43089	41.261	41.01	41.441	0					34	15	3	0	0	0	0.26638	1	8913	8913		13.042	0	1	396720			54749	11420	31361	31362	67025	67025					0.07378955557271638
VSLHVRKSNRA	11	Unmodified	_VSLHVRKSNRA_					0	0	0		ENST00000494813.5_1_X:153187159-153200402:-|nuORF;ENSG00000102030|ENST00000464845|NAA10	ENST00000494813.5_1_X:153187159-153200402:-|nuORF	ENST00000494813.5_1_X:153187159-153200402:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8729858398438	2	633.873102	1265.73165	0.45046	0.00028553	1.7034	0.0010798	2.1539	0.0013653	634.3772778497173	113.35	0.42776	113.37	113.27	113.7	0.014824					79	51	3	0	0	0	0.46819	1	29567	29567		2.2828	0.80087	1	46316			54750	1737	31362	31363	67026	67026					0.10941493051473117
VSLKKPLCF	9	Unmodified	_VSLKKPLCF_					0	0	0		ENST00000360663.9_2_10:75197876-75197960:-|nuORF	ENST00000360663.9_2_10:75197876-75197960:-|nuORF	ENST00000360663.9_2_10:75197876-75197960:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8340454101562	2	517.806988	1033.59942	0.31792	0.00016462	4.234	0.0021924	4.5519	0.002357	517.8092109060791	42.779	0.38261	42.779	42.652	43.034	0					19	13	2	0	0	0	0.21389	1	9404	9404		19.257	2.3147	1	166940			54751	9682	31363	31364	67027	67027					0.08396751990289886
VSLKNTTESF	10	Unmodified	_VSLKNTTESF_					0	0	0		nc|ENSG00000174837|Q14246-4|ADGRE1;nc|ENSG00000174837|Q14246-5|ADGRE1;nc|ENSG00000174837|Q14246-2|ADGRE1;nc|ENSG00000174837|Q14246-3|ADGRE1;ENSG00000174837|ENST00000312053|ADGRE1	nc|ENSG00000174837|Q14246-4|ADGRE1	nc|ENSG00000174837|Q14246-4|ADGRE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7821655273438	2	563.292953	1124.57135	0.33465	0.00018851	1.866	0.0010511	2.2007	0.0012396	563.2940241993426	66.018	0.6089	66.004	65.797	66.406	-0.013588					32	21	2	0	0	0	0.21644	1	16535	16535		30.637	3.7529	1	200270			54752	6820	31364	31365	67028	67028					0.014051005439114306
VSLKNTTESF	10	Unmodified	_VSLKNTTESF_					0	0	0		nc|ENSG00000174837|Q14246-4|ADGRE1;nc|ENSG00000174837|Q14246-5|ADGRE1;nc|ENSG00000174837|Q14246-2|ADGRE1;nc|ENSG00000174837|Q14246-3|ADGRE1;ENSG00000174837|ENST00000312053|ADGRE1	nc|ENSG00000174837|Q14246-4|ADGRE1	nc|ENSG00000174837|Q14246-4|ADGRE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.292953	1124.57135	0.52384	0.00029507	-1.5978	-0.00090002	-1.0739	-0.00060494	563.2914040646203	65.993	0.41652	65.993	65.795	66.211	0	-0.0058488	-0.003691	NaN	30.637	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115640			54753	6820	31364	31365							0.014051005439114306
VSLKTREK	8	Unmodified	_VSLKTREK_					0	0	0			REV__ENSG00000214700|ENST00000429849|C12orf71	REV__ENSG00000214700|ENST00000429849|C12orf71	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.78216552734375	2	480.795466	959.57638	0.30493	0.00014661	-1.8365	-0.00088299	-1.5316	-0.00073638	480.79451889530066	21.097	0.2807	21.097	20.973	21.254	0					13	9	2	0	0	0	0.42371	1	2768	2768		14.838	2.3067	1	59968	+		54754	19064	31365	31366	67029	67029					0.0949744919718114
VSLKYIFMLF	10	Unmodified	_VSLKYIFMLF_					0	0	0			REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C	REV__nc|ENSG00000137145|Q5VZ89-5|DENND4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.906494140625	3	420.906877	1259.6988	-0.051228	-2.1562E-05	-1.1537	-0.00048559	-1.2049	-0.00050715	420.9061335530752	30.646	0.78338	30.646	30.418	31.202	0					46	27	3	0	0	0	0.34325	1	5668	5668		8.4443	0	1	176360	+		54755	15847	31366	31367	67030	67030					0.07934149884385988
VSLLDYTVI	9	Unmodified	_VSLLDYTVI_					0	0	0			REV__nc|ENSG00000077254|Q8TEY7-3|USP33	REV__nc|ENSG00000077254|Q8TEY7-3|USP33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.315673828125	2	511.792058	1021.56956	0.52185	0.00026708	-1.2803	-0.00065523	-0.75842	-0.00038815	511.7911257171971	85.602	0.15272	85.602	85.484	85.637	0					6	5	2	0	0	0	0.25526	1	22496	22496		7.9102	0	1	36040	+		54756	13840	31367	31368	67031	67031					0.0596409152593651
VSLLGKYL	8	Unmodified	_VSLLGKYL_					0	0	0			REV__ENSG00000197275|ENST00000336148|RAD54B	REV__ENSG00000197275|ENST00000336148|RAD54B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.7788391113281	2	446.778754	891.542954	0.13212	5.9027E-05	0.039312	1.7564E-05	0.17143	7.6591E-05	446.77868045541146	49.312	0.74374	49.344	49.014	49.758	0.032043					57	26	3	0	0	0	0.16948	1	11334	11334		48.346	0	1	732240	+		54757	18723	31368	31369	67032	67032					0.09284447425261533
VSLLHKKSL	9	Unmodified	_VSLLHKKSL_					0	0	0		ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	ITSN2|p.G1340Efs*9|1|0.18|ENSG00000198399|chr2:24212720-24212720|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.27734375	2	512.829309	1023.64407	0.55709	0.00028569	-0.048537	-2.4891E-05	0.50855	0.0002608	512.8292909739065	54.745	0.32459	54.808	54.566	54.89	0.063202					17	11	2	0	0	0	0.25066	1	13044	13044		7.2892	0	1	272070			54758	8070	31369	31370	67033	67033					0.13318899127989425
VSLLKVAHRPW	11	Unmodified	_VSLLKVAHRPW_					0	0	0			REV__nc|ENSG00000172915|Q8NFP9|NBEA	REV__nc|ENSG00000172915|Q8NFP9|NBEA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.5482482910156	3	435.931185	1304.77173	0.15825	6.8987E-05	0.45931	0.00020023	0.61756	0.00026922	436.26577289867896	21.507	0.49729	21.406	21.16	21.657	-0.10034					28	17	2	0	0	0	0.33287	1	2850	2850		2.8433	0.21205	1	82567	+		54759	17746	31370	31371	67034	67034					0.13153039722010362
VSLLLAGIIS	10	Unmodified	_VSLLLAGIIS_					0	0	0		ENSG00000104290|ENST00000240093|FZD3	ENSG00000104290|ENST00000240093|FZD3	ENSG00000104290|ENST00000240093|FZD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.76263427734375	2	493.318243	984.621933	0.33803	0.00016676	-0.91401	-0.0004509	-0.57598	-0.00028414	493.31759362623416	67.106	0.40339	67.106	66.964	67.368	0					20	13	2	0	0	0	0.29589	1	16872	16872		17.113	0	1	92355			54760	1875	31371	31372	67035	67035					0.12900674659567812
VSLLLAGIIS	10	Unmodified	_VSLLLAGIIS_					0	0	0		ENSG00000104290|ENST00000240093|FZD3	ENSG00000104290|ENST00000240093|FZD3	ENSG00000104290|ENST00000240093|FZD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7626647949219	2	493.318243	984.621933	0.32994	0.00016276	-0.29498	-0.00014552	0.03496	1.7247E-05	493.317826492962	67.03	0.34164	67.113	66.933	67.274	0.083832					22	11	3	0	0	0	0.31143	1	16816	16816		17.113	0	1	97335			54761	1875	31371	31372	67036	67036					0.12900674659567812
VSLLNTFNE	9	Unmodified	_VSLLNTFNE_					0	0	0			REV__ENSG00000159882|ENST00000429154|ZNF230	REV__ENSG00000159882|ENST00000429154|ZNF230	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.2850952148438	2	518.769114	1035.52368	0.17864	9.2672E-05	-0.063331	-3.2854E-05	0.11531	5.9817E-05	518.768995967279	42.576	0.67587	42.661	42.407	43.083	0.085197					41	24	3	0	0	0	0.25066	1	9399	9399		11.64	0	1	513800	+		54762	16870	31372	31373	67037	67037					0.007334463437018712
VSLMGFPLWVI	11	Unmodified	_VSLMGFPLWVI_					0	0	0		chr10:89462624-89506310|321|10.73|0.6|4.16|-|0|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|83	chr10:89462624-89506310|321|10.73|0.6|4.16|-|0|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|83	chr10:89462624-89506310|321|10.73|0.6|4.16|-|0|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|83	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.239013671875	3	421.238627	1260.69405	-0.10767	-4.5354E-05	0.52026	0.00021915	0.41259	0.0001738	421.23851300242717	33.528	0.96447	33.595	33.245	34.209	0.066704					98	34	4	0	0	0	0.38623	1	6568	6568		7.0371	0.41363	1	2470400			54763	118	31373	31374	67038	67038					0.0741326574161576
VSLNHSNHYL	10	Unmodified	_VSLNHSNHYL_					0	0	0		ENST00000258105.7_1_2:74699127-74699223:-|nuORF	ENST00000258105.7_1_2:74699127-74699223:-|nuORF	ENST00000258105.7_1_2:74699127-74699223:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.2811279296875	2	592.296362	1182.57817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.989	1	48.032	47.532	48.532	0.04332								0	0	0	0.34454	1	10934	10934		17.113	1.2657	1				54764	8942	31374	31375	67039	67039					-0.005815417848680227
VSLNVKGI	8	Unmodified	_VSLNVKGI_					0	0	0		ENST00000461680.1_1_3:51673299-51697433:+|nuORF;ENST00000487093.5_1_3:51669772-51697433:+|nuORF;ENSG00000164080|ENST00000684192|RAD54L2	ENST00000461680.1_1_3:51673299-51697433:+|nuORF	ENST00000461680.1_1_3:51673299-51697433:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.57098388671875	2	415.260728	828.506903	-0.010413	-4.3241E-06	-1.0222	-0.00042448	-1.0326	-0.0004288	415.2602546012492	33.416	0.68874	33.416	33.119	33.808	0					52	24	3	0	0	0	0.29855	1	6499	6499		12.532	0	1	627880			54765	5784	31375	31376	67040	67040					0.08578990248417995
VSLNYGYQF	9	Unmodified	_VSLNYGYQF_					0	0	0			REV__ENSG00000197241|ENST00000400906|SLC2A7	REV__ENSG00000197241|ENST00000400906|SLC2A7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3065185546875	2	545.763832	1089.51311	0.81356	0.00044401	0.67042	0.00036589	1.484	0.00080991	545.7650852768598	45.679	0.13413	45.679	45.586	45.72	0					5	4	2	0	0	0	0.19839	1	10227	10227		21.747	2.3847	1	59128	+		54766	18721	31376	31377	67041	67041					-0.02806536310708907
VSLPHAAR	8	Unmodified	_VSLPHAAR_					0	0	0		ENST00000588173.1_1_19:13263882-13264203:+|nuORF	ENST00000588173.1_1_19:13263882-13264203:+|nuORF	ENST00000588173.1_1_19:13263882-13264203:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.1852722167969	2	425.748319	849.482085	-0.25677	-0.00010932	-0.18956	-8.0707E-05	-0.44633	-0.00019003	425.74822449219516	23.268	0.68673	23.268	23.047	23.734	0					45	23	2	0	0	0	0.34434	1	3341	3341		0.79363	0	1	101270			54767	12140	31377	31378	67042	67042					0.051323551656992095
VSLPRMVY	8	Unmodified	_VSLPRMVY_					0	0	0		ABO|p.D83Mfs*4|1|0.35|ENSG00000175164|chr9:133257535-133257535|C/-|frameshift_variant;nc|ENSG00000175164|P16442|ABO;ENSG00000175164|ENST00000538324|ABO	ABO|p.D83Mfs*4|1|0.35|ENSG00000175164|chr9:133257535-133257535|C/-|frameshift_variant	ABO|p.D83Mfs*4|1|0.35|ENSG00000175164|chr9:133257535-133257535|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.23724365234375	2	482.767863	963.521173	0.18809	9.0805E-05	1.9053	0.00091982	2.0934	0.0010106	482.76890086384395	24.83	0.35748	24.83	24.706	25.064	0					21	12	3	0	0	0	0.3366	1	3865	3865		18.135	0	1	49813			54768	3	31378	31379	67043	67043					0.03795319405060127
VSLQGKLYL	9	Unmodified	_VSLQGKLYL_					0	0	0		PPM1M|p.M69Lfs*9|1|0.14|ENSG00000164088|chr3:52247771-52247772|-/CTCCAAG|frameshift_variant	PPM1M|p.M69Lfs*9|1|0.14|ENSG00000164088|chr3:52247771-52247772|-/CTCCAAG|frameshift_variant	PPM1M|p.M69Lfs*9|1|0.14|ENSG00000164088|chr3:52247771-52247772|-/CTCCAAG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2657165527344	2	510.808042	1019.60153	0.68741	0.00035114	-0.82599	-0.00042192	-0.13858	-7.0788E-05	510.8075386529882	50.704	0.35379	50.749	50.602	50.956	0.044891					19	12	2	0	0	0	0.22596	1	11813	11813		15.847	0	1	235500			54769	13052	31379	31380	67044	67044					0.09251503999746546
VSLQHQRQEQR	11	Unmodified	_VSLQHQRQEQR_					0	0	0		nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;TNIK|p.S574Mfs*23|1|0.18|ENSG00000154310|chr3:171128766-171128766|C/-|frameshift_variant	nc|ENSG00000154310|Q9UKE5-8|TNIK	nc|ENSG00000154310|Q9UKE5-8|TNIK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.81243896484375	3	470.251646	1407.73311	0.23669	0.00011131	1.2364	0.0005814	1.4731	0.0006927	470.25239970759776	33.699	0.216	33.699	33.512	33.728	0					12	7	2	0	0	0	0.33303	1	6534	6534		2.4348	0.97967	1	90919			54770	5122	31380	31381	67045	67045					0.04555082349565964
VSLQNELL	8	Unmodified	_VSLQNELL_					0	0	0			REV__ENST00000471198.1_1_3:167344976-167371234:-|nuORF	REV__ENST00000471198.1_1_3:167344976-167371234:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.73565673828125	2	458.260925	914.507297	-0.015634	-7.1643E-06	0.070344	3.2236E-05	0.05471	2.5071E-05	458.2614000776883	27.134	0.47843	27.112	26.813	27.291	-0.021412					21	16	2	0	0	0	0.3408	1	4618	4618		10.074	0.6908	1	63627	+		54771	17851	31381	31382	67046	67046					0.04662365177614447
VSLRHPGL	8	Unmodified	_VSLRHPGL_					0	0	0		ENST00000484789.5_1_7:154659706-154672733:+|nuORF	ENST00000484789.5_1_7:154659706-154672733:+|nuORF	ENST00000484789.5_1_7:154659706-154672733:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.8851013183594	2	439.763969	877.513385	-0.084862	-3.7319E-05	-0.52175	-0.00022945	-0.60661	-0.00026677	439.76342987242987	28.732	0.31448	28.733	28.58	28.894	0.0004673					15	10	2	0	0	0	0.34185	1	5009	5009		10.183	0	1	44677			54772	11079	31382	31383	67047	67047					0.06972928199797934
VSLRHYYFTIG	11	Unmodified	_VSLRHYYFTIG_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.884521484375	3	452.575067	1354.70337	0.00089426	4.0472E-07	-0.46153	-0.00020887	-0.46063	-0.00020847	452.5747840081014	41.339	0.37239	41.339	41.069	41.441	0					26	13	3	0	0	0	0.32625	1	8913	8913		8.7518	2.1283	1	237450			54773	5071	31383	31384	67048	67048					0.04020750351492097
VSLRHYYFTIG	11	Unmodified	_VSLRHYYFTIG_					0	0	0		nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	nc|ENSG00000153253|Q9NY46-4|SCN3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.8846740722656	3	452.575067	1354.70337	0.19867	8.9914E-05	-0.32614	-0.0001476	-0.12747	-5.769E-05	452.57487676493537	41.002	0.36541	41.092	40.85	41.215	0.090252					32	13	3	0	0	0	0.3299	1	8818	8818		9.7643	0	1	349740			54774	5071	31383	31384	67049	67049					0.04020750351492097
VSLRLRRPSLR	11	Unmodified	_VSLRLRRPSLR_					0	0	0			REV__nc|ENSG00000143127|O75578-3|ITGA10	REV__nc|ENSG00000143127|O75578-3|ITGA10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.8846740722656	3	451.624755	1351.85244	0.10173	4.5943E-05	-0.63126	-0.00028509	-0.52953	-0.00023915	451.6245247215296	41.23	0.33273	41.326	41.065	41.397	0.096622					19	11	3	0	0	0	0.33296	1	8832	8832		1.2148	0.80657	1	167790	+		54775	16150	31384	31385	67050	67050					0.19058320764929704
VSLRRDKDSPK	11	Unmodified	_VSLRRDKDSPK_					0	0	0			REV__ENSG00000154229|ENST00000413366|PRKCA	REV__ENSG00000154229|ENST00000413366|PRKCA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.77984619140625	3	434.249242	1299.7259	-0.25662	-0.00011144	-1.3096	-0.00056871	-1.5663	-0.00068014	434.24932120508555	30.693	0.224	30.72	30.669	30.893	0.027157					9	7	2	0	0	0	0.33236	1	5642	5642		0.36667	0.25874	1	70520	+		54776	16651	31385	31386	67051	67051					0.08802349749112182
VSLRRNRL	8	Unmodified	_VSLRRNRL_					0	0	0		ENSG00000178732|ENST00000692618|GP5	ENSG00000178732|ENST00000692618|GP5	ENSG00000178732|ENST00000692618|GP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.3199462890625	2	507.319974	1012.6254	-0.020225	-1.0261E-05	-0.33007	-0.00016745	-0.3503	-0.00017771	507.31980027373504	14.784	0.39411	14.72	14.589	14.984	-0.064413					23	11	3	0	0	0	0.45169	1	841	841		5.2307	0	1	128600			54777	7073	31386	31387	67052	67052					0.11958782276781221
VSLRSEIL	8	Unmodified	_VSLRSEIL_					0	0	0		ENST00000465269.5_1_X:48661181-48661326:+|nuORF	ENST00000465269.5_1_X:48661181-48661326:+|nuORF	ENST00000465269.5_1_X:48661181-48661326:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7679748535156	2	458.776742	915.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.105	1	44.189	43.689	44.689	0.083996								0	0	0	0.34492	1	9737	9737		16.942	0	1				54778	10793	31387	31388	67053	67053					0.07778357931567825
VSLRVMMSE	9	Unmodified	_VSLRVMMSE_					0	0	0			REV__nc|ENSG00000129460|Q8NEJ9-2|NGDN	REV__nc|ENSG00000129460|Q8NEJ9-2|NGDN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8245849609375	2	526.26737	1050.52019	0.51909	0.00027318	-0.56275	-0.00029616	-0.043665	-2.298E-05	526.2669042606192	38.094	0.35725	38.185	38.042	38.399	0.090881					18	12	2	0	0	0	0.24993	1	7927	7927		8.7454	1.4562	1	163190	+		54779	15416	31388	31389	67054	67054					-0.0030526302614362066
VSLSFRSVHLP	11	Unmodified	_VSLSFRSVHLP_					0	0	0			REV__ENST00000360121.4_1_16:29677771-29678056:+|nuORF	REV__ENST00000360121.4_1_16:29677771-29678056:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.57098388671875	3	414.571545	1240.69281	0.09749	4.0416E-05	-1.0614	-0.00044001	-0.96387	-0.00039959	414.5710195078391	33.531	0.90487	33.531	33.259	34.164	0					80	32	3	0	0	0	0.32495	1	6499	6499		9.7643	1.0125	1	1069700	+		54780	20250	31389	31390	67055	67055					0.08208767697101393
VSLSKKQG	8	Unmodified	_VSLSKKQG_					0	0	0			REV__nc|ENSG00000096395|P12872-2|MLN	REV__nc|ENSG00000096395|P12872-2|MLN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.7557067871094	2	423.75581	845.497067	-0.42787	-0.00018131	0.3758	0.00015925	-0.052071	-2.2065E-05	423.75588927651984	13.371	0.38998	13.272	13.129	13.519	-0.099291					26	13	3	0	0	0	0.28696	1	415	415		32.305	0	1	190120	+		54781	14113	31390	31391	67056	67056					0.06813802243050304
VSLSQMEAELN	11	Unmodified	_VSLSQMEAELN_					0	0	0		ENST00000602819.5_1_4:119200145-119200585:+|nuORF	ENST00000602819.5_1_4:119200145-119200585:+|nuORF	ENST00000602819.5_1_4:119200145-119200585:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.9031677246094	3	407.532427	1219.57545	-0.23661	-9.6426E-05	-1.7374	-0.00070803	-1.974	-0.00080446	407.86604644964865	25.78	0.5995	25.78	25.533	26.133	0					34	20	2	0	0	0	0.32951	1	4115	4115		10.315	7.4719	1	224910			54782	12270	31391	31392	67057	67057					-0.025551780246814815
VSLSQRKYA	9	Unmodified	_VSLSQRKYA_					0	0	0			REV__ENST00000577161.5_1_17:78519375-78883449:+|nuORF	REV__ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8087158203125	2	526.298373	1050.58219	0.17214	9.0597E-05	0.57253	0.00030132	0.74467	0.00039192	526.2990158413244	28.13	0.58919	28.126	27.822	28.411	-0.0042572					27	20	2	0	0	0	0.17277	1	4836	4836		27.629	5.8822	1	174900	+		54783	22457	31392	31393	67058	67058					0.058925477088678235
VSLSQRKYA	9	Unmodified	_VSLSQRKYA_					0	0	0			REV__ENST00000577161.5_1_17:78519375-78883449:+|nuORF	REV__ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.8086547851562	2	526.298373	1050.58219	0.13006	6.8448E-05	0.89035	0.00046859	1.0204	0.00053704	526.2989546362131	28.117	0.47248	28.117	27.849	28.322	0.0004673					28	16	2	0	0	0	0.22215	1	4833	4833		20.415	2.0414	1	199210	+		54784	22457	31392	31393	67059	67059					0.058925477088678235
VSLSRLSLS	9	Unmodified	_VSLSRLSLS_					0	0	0		ENST00000465425.1_1_19:36497111-36499583:-|nuORF	ENST00000465425.1_1_19:36497111-36499583:-|nuORF	ENST00000465425.1_1_19:36497111-36499583:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2728271484375	2	481.287474	960.560395	0.30878	0.00014861	0.29884	0.00014383	0.60762	0.00029244	481.2873903621625	35.945	0.34184	35.945	35.8	36.142	0					18	12	2	0	0	0	0.2322	1	7209	7209		20.454	0	1	178670			54785	10797	31393	31394	67060	67060					0.0785374296029886
VSLSRLSLS	9	Unmodified	_VSLSRLSLS_					0	0	0		ENST00000465425.1_1_19:36497111-36499583:-|nuORF	ENST00000465425.1_1_19:36497111-36499583:-|nuORF	ENST00000465425.1_1_19:36497111-36499583:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	481.287474	960.560395	0.34484	0.00016597	0.3867	0.00018611	0.73154	0.00035208	481.28748952113364	35.872	0.32564	35.954	35.71	36.036	0.082359	0.031321	-0.00010516	NaN	20.454	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103360			54786	10797	31393	31394							0.0785374296029886
VSLSRLSLS	9	Unmodified	_VSLSRLSLS_					0	0	0		ENST00000465425.1_1_19:36497111-36499583:-|nuORF	ENST00000465425.1_1_19:36497111-36499583:-|nuORF	ENST00000465425.1_1_19:36497111-36499583:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	481.287474	960.560395	0.35445	0.00017059	0.72177	0.00034738	1.0762	0.00051797	481.28762591072217	35.783	0.30485	35.869	35.73	36.034	0.08625	-0.053546	0.00021738	NaN	20.454	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124000			54787	10797	31393	31394							0.0785374296029886
VSLSSSGRI	9	Unmodified	_VSLSSSGRI_					0	0	0		ENST00000505729.1_3_4:39613593-39613689:-|nuORF	ENST00000505729.1_3_4:39613593-39613689:-|nuORF	ENST00000505729.1_3_4:39613593-39613689:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.591796875	2	453.256174	904.497795	0.23958	0.00010859	-2.6309	-0.0011925	-2.3913	-0.0010839	453.2547026479436	30.098	0.39173	30.126	29.933	30.324	0.027946					22	13	2	0	0	0	0.25323	1	5495	5495		10.074	1.4806	1	129430			54788	11318	31394	31395	67061	67061					0.0417259689210141
VSLSTVKLK	9	Unmodified	_VSLSTVKLK_					0	0	0		ENST00000396013.5_1_7:38268464-38269608:+|nuORF	ENST00000396013.5_1_7:38268464-38269608:+|nuORF	ENST00000396013.5_1_7:38268464-38269608:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.26641845703125	2	487.815867	973.617182	0.34083	0.00016626	-0.90777	-0.00044283	-0.56695	-0.00027657	487.8155666413491	30.008	0.083725	30.02	29.948	30.032	0.012266					4	2	2	0	0	0	0.26145	1	5421	5421		2.0598	0	1	28882			54789	10103	31395	31396	67062	67062					0.12931790516790898
VSLSVRVS	8	Unmodified	_VSLSVRVS_					0	0	0		ENST00000258807.5_1_14:24777867-24780024:-|nuORF	ENST00000258807.5_1_14:24777867-24780024:-|nuORF	ENST00000258807.5_1_14:24777867-24780024:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.5578308105469	2	423.75581	845.497067	-0.42787	-0.00018131	0.3758	0.00015925	-0.052071	-2.2065E-05	423.75588927651984	13.371	0.38998	13.272	13.129	13.519	-0.099291					26	13	3	0	0	0	0.34367	1	451	451		4.3292	0	1	190120			54790	8950	31396	31397	67063	67063					0.06813802243050304
VSLSVRVS	8	Unmodified	_VSLSVRVS_					0	0	0		ENST00000258807.5_1_14:24777867-24780024:-|nuORF	ENST00000258807.5_1_14:24777867-24780024:-|nuORF	ENST00000258807.5_1_14:24777867-24780024:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.55780029296875	2	423.75581	845.497067	-0.40346	-0.00017097	0.2409	0.00010208	-0.16256	-6.8884E-05	423.7558676580199	13.385	0.36024	13.317	13.189	13.549	-0.067496					28	12	3	0	0	0	0.34367	1	456	456		4.3292	0	1	190090			54791	8950	31396	31397	67064	67064					0.06813802243050304
VSLTWEPPEY	10	Unmodified	_VSLTWEPPEY_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.G32654Vfs*24|1|0.41|ENSG00000155657|chr2:178533731-178533731|C/-|frameshift_variant;TTN|p.R30215Vfs*13|1|0.21|ENSG00000155657|chr2:178545544-178545544|G/-|frameshift_variant;TTN|p.F32636Yfs*6|1|0.06|ENSG00000155657|chr2:178533785-178533786|-/CAGATAGT|frameshift_variant;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.V17759Afs*3|1|0.05|ENSG00000155657|chr2:178594194-178594195|-/G|frameshift_variant;TTN|p.P20319Hfs*66|1|0.07|ENSG00000155657|chr2:178582577-178582578|-/AAAATAAATAT|frameshift_variant;TTN|p.G17760Ifs*40|1|0.07|ENSG00000155657|chr2:178594192-178594193|-/TCGACTTCAGAGAT|frameshift_variant;TTN|p.A15448Hfs*16|1|0.24|ENSG00000155657|chr2:178610249-178610261|TTCTCCTCCCAGC/-|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.9031677246094	3	407.532645	1219.5761	-0.17797	-7.253E-05	-2.2643	-0.00092279	-2.4423	-0.00099532	407.53167716520494	25.828	0.54836	25.806	25.524	26.073	-0.022238					28	19	2	0	0	0	0.31746	1	4121	4121		6.1918	0	1	178810			54792	5186	31397	31398	67065	67065					-0.024900153133330605
VSLVGKKLI	9	Unmodified	_VSLVGKKLI_					0	0	0		ENST00000513347.1_1_17:46972190-46972301:+|nuORF	ENST00000513347.1_1_17:46972190-46972301:+|nuORF	ENST00000513347.1_1_17:46972190-46972301:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7622375488281	2	478.828778	955.643003	0.10821	5.1815E-05	0.62913	0.00030124	0.73734	0.00035306	478.8289703686122	33.762	0.33367	33.829	33.633	33.967	0.066704					14	11	2	0	0	0	0.26145	1	6567	6567		0	0	1	64148			54793	11402	31398	31399	67066	67066					0.16340684759086344
VSLVKRLF	8	Unmodified	_VSLVKRLF_					0	0	0			REV__nc|ENSG00000072195|Q15772-1|SPEG	REV__nc|ENSG00000072195|Q15772-1|SPEG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.31341552734375	2	481.313295	960.612037	0.071594	3.4459E-05	0.27401	0.00013188	0.3456	0.00016634	481.31334986026934	61.994	1.3486	61.986	61.297	62.646	-0.0085526					91	49	2	0	0	0	0.19197	1	15294	15294		44.407	4.4497	1	1942200	+		54794	13757	31399	31400	67067	67067					0.13015531444852968
VSLYWYRQALG	11	Unmodified	_VSLYWYRQALG_					0	0	0		nc|ENSG00000211727|A0A1B0GX31|TRBV7-6	nc|ENSG00000211727|A0A1B0GX31|TRBV7-6	nc|ENSG00000211727|A0A1B0GX31|TRBV7-6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.8846740722656	3	452.575067	1354.70337	-0.020823	-9.4241E-06	0.01541	6.974E-06	-0.0054135	-2.45E-06	452.5749588854852	40.82	0.53839	40.92	40.806	41.344	0.099407					28	19	2	0	0	0	0.3299	1	8832	8832		6.6235	0	1	333880			54795	12925	31400	31401	67068	67068					0.040207503515148346
VSMDYAISK	9	Oxidation (M)	_VSM(Oxidation (M))DYAISK_		VSM(1)DYAISK		VSM(57)DYAISK	0	0	1		ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.24951171875	2	515.2497	1028.48485	0.21777	0.00011221	-0.66941	-0.00034491	-0.45164	-0.00023271	515.2492233357127	27.139	0.85974	27.139	26.729	27.589	0					69	29	3	0	0	0	0.097101	1	4552	4552		57.249	34.513	1	235140			54796	7864	31401	31402	67069	67069		853			-0.028256022823143212
VSMDYAISK	9	Oxidation (M)	_VSM(Oxidation (M))DYAISK_		VSM(1)DYAISK		VSM(61)DYAISK	0	0	1		ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.249755859375	2	515.2497	1028.48485	0.088634	4.5669E-05	-0.43584	-0.00022456	-0.3472	-0.0001789	515.2493559617516	27.125	1.1259	27.103	26.65	27.776	-0.021412					86	39	3	0	0	0	0.027957	1	4622	4622		61.09	33.461	1	289870			54797	7864	31401	31402	67070	67070		853			-0.028256022823143212
VSMDYAISK	9	Oxidation (M)	_VSM(Oxidation (M))DYAISK_		VSM(1)DYAISK		VSM(61)DYAISK	0	0	1		ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	ENSG00000196453|ENST00000247930|ZNF777	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2496337890625	2	515.2497	1028.48485	0.10931	5.6322E-05	-0.22674	-0.00011683	-0.11743	-6.0504E-05	515.2494425360369	27.152	0.99201	27.14	26.711	27.703	-0.01156					73	34	3	0	0	0	0.027957	1	4622	4622		61.09	28.304	1	267240			54798	7864	31401	31402	67071	67071		853			-0.028256022823143212
VSMLESRSL	9	Unmodified	_VSMLESRSL_					0	0	0			REV__ENSG00000078237|ENST00000179259|TIGAR	REV__ENSG00000078237|ENST00000179259|TIGAR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.84527587890625	2	511.270967	1020.52738	0.056755	2.9017E-05	0.27195	0.00013904	0.32871	0.00016806	511.27089543858193	52.005	0.73035	52.004	51.71	52.44	-0.00081253					44	26	2	0	0	0	0.24311	1	12118	12118		7.2892	2.96	1	177580	+		54799	13854	31402	31403	67072	67072					0.017937928459332397
VSMLNVYLK	9	Oxidation (M)	_VSM(Oxidation (M))LNVYLK_		VSM(1)LNVYLK		VSM(130)LNVYLK	0	0	1		ENST00000550009.1_1_12:120875908-120876378:+|nuORF;ENSG00000111775|ENST00000229379|COX6A1	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7994995117188	2	541.79936	1081.58417	0.74488	0.00040357	-0.52824	-0.0002862	0.21664	0.00011738	541.799467009573	45.99	1.0886	45.99	45.341	46.43	0					66	39	2	0	0	0	0.00051734	1	10256	10256		128.93	72.755	1	2824800			54800	2388	31403	31404	67073	67073		294			0.04663840402417918
VSMLNVYLK	9	Oxidation (M)	_VSM(Oxidation (M))LNVYLK_		VSM(1)LNVYLK		VSM(130)LNVYLK	0	0	1		ENST00000550009.1_1_12:120875908-120876378:+|nuORF;ENSG00000111775|ENST00000229379|COX6A1	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.800537109375	2	541.79936	1081.58417	0.519	0.0002812	0.18072	9.7916E-05	0.69973	0.00037911	541.7997142788859	45.783	0.98343	45.843	45.253	46.236	0.059837					75	34	3	0	0	0	0.00051734	1	10283	10283		128.93	75.1	1	3085600			54801	2388	31403	31404	67074	67074		294			0.04663840402417918
VSMLNVYLK	9	Oxidation (M)	_VSM(Oxidation (M))LNVYLK_		VSM(1)LNVYLK		VSM(130)LNVYLK	0	0	1		ENST00000550009.1_1_12:120875908-120876378:+|nuORF;ENSG00000111775|ENST00000229379|COX6A1	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	ENST00000550009.1_1_12:120875908-120876378:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7998657226562	2	541.79936	1081.58417	0.73695	0.00039928	-0.37566	-0.00020353	0.36129	0.00019574	541.799513685561	45.614	1.0049	45.68	45.274	46.279	0.065052					63	36	2	0	0	0	0.00078391	1	10228	10228		125.53	75.596	1	2841700			54802	2388	31403	31404	67075	67075		294			0.04663840402417918
VSMLPLTVDSW	11	Unmodified	_VSMLPLTVDSW_					0	0	0			REV__ENST00000473529.5_1_9:34647835-34648133:+|nuORF	REV__ENST00000473529.5_1_9:34647835-34648133:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.2165832519531	3	416.54953	1246.62676	-0.12977	-5.4057E-05	-3.1243	-0.0013014	-3.2541	-0.0013555	416.5483047698778	18.47	0.36462	18.412	18.145	18.509	-0.058172					18	12	2	0	0	0	0.33255	1	1955	1955		1.2148	0.10508	1	32417	+		54803	19048	31404	31405	67076	67076					0.013311907400066048
VSMNMKDAF	9	Unmodified	_VSMNMKDAF_					0	0	0		ENSG00000158445|ENST00000371741|KCNB1	ENSG00000158445|ENST00000371741|KCNB1	ENSG00000158445|ENST00000371741|KCNB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8167114257812	2	521.738445	1041.46234	0.80098	0.0004179	-0.0099041	-5.1674E-06	0.79107	0.00041273	521.738331910781	45.837	0.58043	45.837	45.393	45.974	0					30	20	2	0	0	0	0.25066	1	10193	10193		3.9444	1.8846	1	159190			54804	5356	31405	31406	67077	67077					-0.0567352495158957
VSMNMKDAF	9	Unmodified	_VSMNMKDAF_					0	0	0		ENSG00000158445|ENST00000371741|KCNB1	ENSG00000158445|ENST00000371741|KCNB1	ENSG00000158445|ENST00000371741|KCNB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.8164672851562	2	521.738445	1041.46234	0.55479	0.00028946	-0.26891	-0.0001403	0.28588	0.00014915	521.7382091107298	45.58	0.53822	45.645	45.302	45.84	0.065048					28	19	2	0	0	0	0.25066	1	10129	10129		3.9444	0	1	168410			54805	5356	31405	31406	67078	67078					-0.0567352495158957
VSMPDVDLNLK	11	Oxidation (M)	_VSM(Oxidation (M))PDVDLNLK_		VSM(1)PDVDLNLK		VSM(77)PDVDLNLK	0	0	1		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.8209838867188	2	623.821021	1245.62749	0.21433	0.0001337	1.2252	0.00076429	1.4395	0.000898	623.821484041335	47.496	0.398	47.544	47.374	47.772	0.04752					34	14	3	0	0	0	0.006514	1	10798	10798		77.049	31.309	1	618950			54806	3189	31406	31407	67079	67079		409			0.014499853890583836
VSMRPLLS	8	Unmodified	_VSMRPLLS_					0	0	0			REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.236572265625	2	451.760038	901.505523	-0.0076304	-3.4471E-06	0.76156	0.00034404	0.75393	0.0003406	451.7602948480198	40.938	0.34329	41.034	40.721	41.065	0.096622					17	12	2	0	0	0	0.3366	1	8727	8727		12.532	0	1	150550	+		54807	23106	31407	31408	67080	67080					0.0508303288801244
VSMSLANYDRS	11	Unmodified	_VSMSLANYDRS_					0	0	0			REV__nc|ENSG00000110514|Q8WXG6-6|MADD	REV__nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.7923583984375	2	621.792795	1241.57104	0.031561	1.9624E-05	0.17847	0.00011097	0.21003	0.00013059	621.7929044752511	29.328	0.71208	29.341	29.033	29.745	0.013474					58	24	3	0	0	0	0.37585	1	5193	5193		14.405	1.3629	1	393300	+		54808	14674	31408	31409	67081	67081					-0.04008642447593047
VSNIKSLSF	9	Unmodified	_VSNIKSLSF_					0	0	0		nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2691650390625	2	497.782025	993.549496	0.36611	0.00018224	-0.37822	-0.00018827	-0.012115	-6.0306E-06	497.7815864383672	41.106	0.34716	41.196	40.952	41.299	0.090248					14	12	2	0	0	0	0.27532	1	8802	8802		12.532	1.7076	1	165700			54809	5915	31409	31410	67082	67082					0.05246340585995313
VSNIKSLSF	9	Unmodified	_VSNIKSLSF_					0	0	0		nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	nc|ENSG00000165006|Q9NZ09-2|UBAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.2691345214844	2	497.782025	993.549496	0.16349	8.1382E-05	-0.06548	-3.2595E-05	0.098009	4.8787E-05	497.7820451527309	41.061	0.35387	41.158	40.933	41.287	0.096622					14	12	2	0	0	0	0.27532	1	8789	8789		12.532	0.89125	1	152870			54810	5915	31409	31410	67083	67083					0.05246340585995313
VSNLNRQFLFR	11	Unmodified	_VSNLNRQFLFR_					0	0	0		ENSG00000144744|ENST00000361055|UBA3;nc|ENSG00000144744|Q8TBC4-2|UBA3;ENST00000465108.5_1_3:69120684-69129504:-|nuORF	ENSG00000144744|ENST00000361055|UBA3	ENSG00000144744|ENST00000361055|UBA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.7825927734375	3	465.261482	1392.76262	-0.21508	-0.00010007	-1.3219	-0.00061505	-1.537	-0.00071511	465.2605334497836	31.555	0.35153	31.555	31.231	31.583	0					17	12	2	0	0	0	0.33025	1	5909	5909		3.8459	0	1	128070			54811	4609	31410	31411	67084	67084					0.08194646365700464
VSNNKLTQHFS	11	Unmodified	_VSNNKLTQHFS_					0	0	0			REV__nc|ENSG00000049246|P56645|PER3	REV__nc|ENSG00000049246|P56645|PER3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.8303833007812	2	637.828026	1273.6415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.04	1	101.04	100.54	101.54	-0.0054703								0	0	0	0.35283	1	26993	26993		7.609	1.8255	1		+		54812	13556	31411	31412	67085	67085					0.015623989323557907
VSNPVRKL	8	Unmodified	_VSNPVRKL_					0	0	0			REV__nc|ENSG00000147162|O15294-2|OGT	REV__nc|ENSG00000147162|O15294-2|OGT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2403564453125	2	456.784902	911.55525	0.037906	1.7315E-05	0.10817	4.941E-05	0.14607	6.6724E-05	456.7848947622225	23.659	0.53897	23.586	23.313	23.852	-0.072559					28	18	2	0	0	0	0.34218	1	3502	3502		9.3474	0	1	34967	+		54813	23023	31412	31413	67086	67086					0.09593483888329501
VSNQLQFN	8	Unmodified	_VSNQLQFN_					0	0	0			REV__ENST00000509913.1_1_5:133295698-133304275:-|nuORF	REV__ENST00000509913.1_1_5:133295698-133304275:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7666931152344	2	475.240524	948.466495	0.059946	2.8489E-05	-0.43829	-0.00020829	-0.37834	-0.0001798	475.24007367639035	17.572	0.40378	17.454	17.259	17.663	-0.11739					22	13	2	0	0	0	0.34247	1	1652	1652		8.5933	0	1	82947	+		54814	21795	31413	31414	67087	67087					-0.009799761420026698
VSNRKRASQ	9	Unmodified	_VSNRKRASQ_					0	0	0			REV__ENST00000540887.1_1_11:63971152-63971275:+|nuORF	REV__ENST00000540887.1_1_11:63971152-63971275:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7138671875	2	523.296696	1044.57884	0.1635	8.5558E-05	2.5353	0.0013267	2.6988	0.0014123	523.2978332060039	31.316	0.4679	31.359	31.156	31.624	0.042364					20	16	2	0	0	0	0.24924	1	5845	5845		14.405	2.1647	1	114940	+		54815	22122	31414	31415	67088	67088					0.05833297654839953
VSNVKQWHAF	10	Unmodified	_VSNVKQWHAF_					0	0	0			REV__ENST00000495918.1_1_1:183103830-183107010:+|nuORF	REV__ENST00000495918.1_1_1:183103830-183107010:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.547119140625	3	405.88049	1214.61964	0.28488	0.00011563	-0.21819	-8.8558E-05	0.066695	2.707E-05	405.88035402524906	33.878	0.6898	33.878	33.617	34.306	0					39	24	2	0	0	0	0.318	1	6542	6542		3.8763	1.97	1	314610	+		54816	21665	31415	31416	67089	67089					0.02091638974457055
VSNVYLRR	8	Unmodified	_VSNVYLRR_					0	0	0			REV__nc|ENSG00000156299|Q13009-2|TIAM1	REV__nc|ENSG00000156299|Q13009-2|TIAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.28125	2	503.793258	1005.57196	0.031084	1.566E-05	-0.60835	-0.00030648	-0.57727	-0.00029082	503.7930544432986	14.811	0.14447	14.811	14.729	14.873	0					6	4	2	0	0	0	0.34218	1	856	856		9.3474	0	1	18449	+		54817	16742	31416	31417	67090	67090					0.06939984774271579
VSPALAAGR	9	Unmodified	_VSPALAAGR_					0	0	0		ENST00000417098.5_1_2:200322607-200322670:-|nuORF	ENST00000417098.5_1_2:200322607-200322670:-|nuORF	ENST00000417098.5_1_2:200322607-200322670:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2331848144531	2	421.248152	840.481751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.533	1	25.477	24.977	25.977	-0.055931								0	0	0	0.2362	1	4084	4084		10.824	1.4765	1				54818	10328	31417	31418	67091	67091					0.05512935445858602
VSPEQPPKAKV	11	Unmodified	_VSPEQPPKAKV_					0	0	0		EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.3407592773438	2	590.340238	1178.66592	0.35431	0.00020917	0.1595	9.4162E-05	0.51382	0.00030333	590.3402886771744	24.556	0.67363	24.556	24.312	24.986	0					48	22	3	0	0	0	0.44828	1	3776	3776		4.897	1.3005	1	173500			54819	12336	31418	31419	67092	67092					0.08373659085896179
VSPEQPPKAKV	11	Unmodified	_VSPEQPPKAKV_					0	0	0		EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.3412475585938	2	590.340238	1178.66592	0.3446	0.00020343	0.73124	0.00043168	1.0758	0.00063511	590.3407197512782	24.618	0.6288	24.562	24.344	24.972	-0.055931					44	21	3	0	0	0	0.43149	1	3809	3809		7.1017	0	1	179560			54820	12336	31418	31419	67093	67093					0.08373659085896179
VSPEQPPKAKV	11	Unmodified	_VSPEQPPKAKV_					0	0	0		EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.3408203125	2	590.340238	1178.66592	0.16691	9.8531E-05	1.123	0.00066295	1.2899	0.00076148	590.340961999393	24.599	0.51879	24.567	24.344	24.862	-0.031408					42	17	3	0	0	0	0.46655	1	3824	3824		2.4985	0.43874	1	199560			54821	12336	31418	31419	67094	67094					0.08373659085896179
VSPEQPPKAKV	11	Unmodified	_VSPEQPPKAKV_					0	0	0		EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	590.340238	1178.66592	0.35431	0.00020917	0.1595	9.4162E-05	0.51382	0.00030333	590.3402886771744	24.556	0.67363	24.556	24.312	24.986	0	-0.0053478	-0.00046083	NaN	7.1017	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173500			54822	12336	31418	31419							0.08373659085896179
VSPEQPPKAKV	11	Unmodified	_VSPEQPPKAKV_					0	0	0		EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	590.340238	1178.66592	0.3446	0.00020343	0.73124	0.00043168	1.0758	0.00063511	590.3407197512782	24.618	0.6288	24.562	24.344	24.972	-0.055931	-0.000103	0.0002142	NaN	7.1017	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179560			54823	12336	31418	31419							0.08373659085896179
VSPEQPPKAKV	11	Unmodified	_VSPEQPPKAKV_					0	0	0		EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	EPB41L2|p.F508Vfs*6|1|0.16|ENSG00000079819|chr6:130890419-130890432|CCCAAGGTCAGGAA/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	590.340238	1178.66592	0.16691	9.8531E-05	1.123	0.00066295	1.2899	0.00076148	590.340961999393	24.599	0.51879	24.567	24.344	24.862	-0.031408	0.0054508	0.00067674	NaN	7.1017	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199560			54824	12336	31418	31419							0.08373659085896179
VSPFEMNFL	9	Unmodified	_VSPFEMNFL_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2623291015625	2	542.26261	1082.51067	0.20487	0.00011109	-0.76017	-0.00041221	-0.5553	-0.00030112	542.2623196264174	12.923	0.60558	12.824	12.7	13.306	-0.099291					49	20	4	0	0	0	0.34681	1	365	365		1.8442	0	1	399030			54825	7148	31419	31420	67095	67095					-0.02728708040035599
VSPFWAVAAA	10	Unmodified	_VSPFWAVAAA_					0	0	0			REV__ENST00000345662.5_1_2:32288779-32289037:+|nuORF	REV__ENST00000345662.5_1_2:32288779-32289037:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7707824707031	2	509.77146	1017.52837	-0.025102	-1.2796E-05	-1.1501	-0.00058628	-1.1752	-0.00059907	509.77092620540793	12.877	0.95981	12.877	12.468	13.427	0					122	33	6	0	0	0	0.39745	1	364	364		3.9444	0.66309	1	1059400	+		54826	20146	31420	31421	67096	67096					0.0203037527712695
VSPKDELTA	9	Unmodified	_VSPKDELTA_					0	0	0		nc|ENSG00000172468|Q96LI6-2|HSFY1;nc|ENSG00000172468|Q96LI6-3|HSFY1;ENSG00000172468|ENST00000307393|HSFY1;ENSG00000169953|ENST00000304790|HSFY2	nc|ENSG00000172468|Q96LI6-2|HSFY1	nc|ENSG00000172468|Q96LI6-2|HSFY1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2447509765625	2	480.25584	958.497126	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.157	1	90.157	89.657	90.657	0								0	0	0	0.24446	1	23888	23888		8.1555	2.4237	1				54827	6405	31421	31422	67097	67097					0.016217574523807343
VSPLVKYLLF	10	Unmodified	_VSPLVKYLLF_					0	0	0		ENSG00000158457|ENST00000486685|TSPAN33	ENSG00000158457|ENST00000486685|TSPAN33	ENSG00000158457|ENST00000486685|TSPAN33	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8447875976562	2	589.862818	1177.71108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.82	1	101.82	101.32	102.32	0								0	0	0	0.37739	1	27140	27140		3.2813	0	1				54828	5357	31422	31423	67098	67098					0.12933509619074357
VSPNTGNPK	9	Unmodified	_VSPNTGNPK_					0	0	0			REV__nc|ENSG00000163873|Q13003-2|GRIK3	REV__nc|ENSG00000163873|Q13003-2|GRIK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.78692626953125	2	457.240524	912.466495	0.20844	9.5309E-05	-0.22325	-0.00010208	-0.014803	-6.7685E-06	457.2406619867074	19.709	0.47696	19.654	19.369	19.846	-0.055693					25	16	2	0	0	0	0.25622	1	2273	2273		7.2892	2.0586	1	34373	+		54829	17099	31423	31424	67099	67099					0.006760238580113764
VSPPGNKK	8	Unmodified	_VSPPGNKK_					0	0	0			REV__ENST00000475815.5_1_2:36785551-36785653:-|nuORF	REV__ENST00000475815.5_1_2:36785551-36785653:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2116394042969	2	413.742702	825.470852	-1.1541	-0.00047751	-1.0665	-0.00044124	-2.2206	-0.00091875	413.74246993752087	34.628	0.5209	34.703	34.353	34.874	0.075306					39	18	3	0	0	0	0.3366	1	6753	6753		12.532	4.6214	1	99486	+		54830	17616	31424	31425	67100	67100					0.05113533071573784
VSPQELIHIFI	11	Unmodified	_VSPQELIHIFI_					0	0	0		ENST00000553480.1_1_14:45331723-45332152:-|nuORF	ENST00000553480.1_1_14:45331723-45332152:-|nuORF	ENST00000553480.1_1_14:45331723-45332152:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.5958251953125	3	432.583451	1294.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.435	1	42.435	41.935	42.935	0								0	0	0	0.36995	1	9235	9235		3.8459	0	1				54831	11819	31425	31426	67101	67101					0.09294805154081587
VSPRDRPNRK	10	Unmodified	_VSPRDRPNRK_					0	0	0			REV__nc|ENSG00000137601|Q96PY6-5|NEK1	REV__nc|ENSG00000137601|Q96PY6-5|NEK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.5888366699219	3	408.902177	1223.6847	-0.11909	-4.8698E-05	2.7429	0.0011216	2.6238	0.0010729	409.23756180086997	40.077	0.19666	40.077	39.996	40.193	0					9	6	2	0	0	0	0.32034	1	8530	8530		4.7159	1.1289	1	59375	+		54832	15873	31426	31427	67102	67102					0.08180633500319345
VSPRLRVPL	9	Unmodified	_VSPRLRVPL_					0	0	0			REV__ENST00000488221.5_1_17:18156710-18157010:-|nuORF	REV__ENST00000488221.5_1_17:18156710-18157010:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2318725585938	2	518.834926	1035.6553	0.54896	0.00028482	-0.41372	-0.00021465	0.13524	7.017E-05	518.8345524496842	29.772	0.44871	29.772	29.521	29.97	0					36	15	3	0	0	0	0.25323	1	5360	5360		10.074	0	1	260830	+		54833	21573	31427	31428	67103	67103					0.13889721222130902
VSPSDKTKN	9	Unmodified	_VSPSDKTKN_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.258544921875	2	488.258914	974.503274	0.092107	4.4972E-05	0.084911	4.1458E-05	0.17702	8.643E-05	488.25893277313287	16.696	1.866	16.582	15.921	17.787	-0.11434					155	65	3	0	0	0	0.25989	1	1500	1500		14.838	1.9657	1	1158800			54834	1632	31428	31429	67104	67104					0.01500275683918062
VSPSRASI	8	Unmodified	_VSPSRASI_					0	0	0			REV__ENSG00000142235|ENST00000600059|LMTK3	REV__ENSG00000142235|ENST00000600059|LMTK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.9119873046875	2	408.732335	815.450116	-0.15956	-6.5217E-05	0.31851	0.00013019	0.15895	6.4969E-05	408.73218734077665	24.104	0.45011	24.104	23.973	24.423	0					22	15	2	0	0	0	0.34131	1	3623	3623		7.9102	0	1	34626	+		54835	16112	31429	31430	67105	67105					0.03500942691914588
VSPSRASI	8	Unmodified	_VSPSRASI_					0	0	0			REV__ENSG00000142235|ENST00000600059|LMTK3	REV__ENSG00000142235|ENST00000600059|LMTK3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	408.732335	815.450116	0.13112	5.3595E-05	1.0019	0.0004095	1.133	0.0004631	408.7329119203914	23.789	0.11225	23.75	23.681	23.793	-0.038927	-0.17701	0.00053204	NaN	7.9102	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18349	+		54836	16112	31429	31430							0.03500942691914588
VSPTIILLG	9	Unmodified	_VSPTIILLG_					0	0	0			REV__ENST00000427910.1_1_X:35077528-35077942:+|nuORF	REV__ENST00000427910.1_1_X:35077528-35077942:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.79345703125	2	456.791861	911.569169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.152	1	34.152	33.652	34.652	0								0	0	0	0.25631	1	6704	6704		4.3292	0	1		+		54837	20913	31430	31431	67106	67106					0.1098471659677216
VSPTIILLG	9	Unmodified	_VSPTIILLG_					0	0	0			REV__ENST00000427910.1_1_X:35077528-35077942:+|nuORF	REV__ENST00000427910.1_1_X:35077528-35077942:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.79345703125	2	456.791861	911.569169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.966	1	34.032	33.532	34.532	0.06636								0	0	0	0.25631	1	6647	6647		4.3292	0	1		+		54838	20913	31430	31431	67107	67107					0.1098471659677216
VSPTIILLG	9	Unmodified	_VSPTIILLG_					0	0	0			REV__ENST00000427910.1_1_X:35077528-35077942:+|nuORF	REV__ENST00000427910.1_1_X:35077528-35077942:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7935485839844	2	456.791861	911.569169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.951	1	34.017	33.517	34.517	0.066704								0	0	0	0.25631	1	6636	6636		4.3292	0	1		+		54839	20913	31430	31431	67108	67108					0.1098471659677216
VSPTSPRLR	9	Unmodified	_VSPTSPRLR_					0	0	0		ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.I1710*|1|0.31|ENSG00000023516|chr13:42308462-42308462|A/-|frameshift_variant;AKAP11|p.F528Lfs*17|1|0.33|ENSG00000023516|chr13:42300327-42300327|T/-|frameshift_variant	ENSG00000023516|ENST00000025301|AKAP11	ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7983093261719	2	506.79854	1011.58253	-0.035407	-1.7944E-05	-0.81938	-0.00041526	-0.85479	-0.00043321	506.79797982929153	27.689	0.45887	27.667	27.464	27.923	-0.021412					31	15	3	0	0	0	0.11461	1	4772	4772		36.127	8.4982	1	149410			54840	24	31431	31432	67109	67109					0.07719967428704422
VSPVHCNLWR	10	Unmodified	_VSPVHCNLWR_					0	0	0		ENST00000523488.5_1_8:3008917-3019783:-|nuORF;ENST00000335551.11_1_8:3000159-3019783:-|nuORF	ENST00000523488.5_1_8:3008917-3019783:-|nuORF	ENST00000523488.5_1_8:3008917-3019783:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.570556640625	3	404.209842	1209.6077	-0.052305	-2.1142E-05	-3.9485	-0.001596	-4.0008	-0.0016172	404.2083347346931	20.44	0.28439	20.44	20.285	20.57	0					11	9	2	0	0	0	0.32054	1	2554	2554		1.5923	0	1	21220			54841	9480	31432	31433	67110	67110					0.011276989596126441
VSPWAYRIS	9	Unmodified	_VSPWAYRIS_					0	0	0		ENSG00000172458|ENST00000682841|IL17D	ENSG00000172458|ENST00000682841|IL17D	ENSG00000172458|ENST00000682841|IL17D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7860717773438	2	539.787641	1077.56073	0.43479	0.00023469	-3.1494	-0.0017	-2.7146	-0.0014653	539.7856092926013	24.162	0.32858	24.089	23.905	24.234	-0.072559					24	10	3	0	0	0	0.30064	1	3670	3670		8.7454	0.58988	1	72878			54842	6635	31433	31434	67111	67111					0.02505162680131434
VSPWAYRIS	9	Unmodified	_VSPWAYRIS_					0	0	0		ENSG00000172458|ENST00000682841|IL17D	ENSG00000172458|ENST00000682841|IL17D	ENSG00000172458|ENST00000682841|IL17D	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	539.787641	1077.56073	0.35878	0.00019367	-2.9381	-0.0015859	-2.5793	-0.0013923	539.7853739866985	23.965	0.39313	23.965	23.769	24.162	0	-0.075765	-0.0002036	NaN	8.7454	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74895			54843	6635	31433	31434							0.02505162680131434
VSPWEWNG	8	Unmodified	_VSPWEWNG_					0	0	0		ENST00000526095.1_1_11:2798856-2869230:+|nuORF	ENST00000526095.1_1_11:2798856-2869230:+|nuORF	ENST00000526095.1_1_11:2798856-2869230:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7216491699219	2	487.721967	973.429381	0.1738	8.4768E-05	-0.49828	-0.00024302	-0.32448	-0.00015826	487.72160905327024	22.089	2.6812	22.089	20.709	23.39	0					167	94	2	0	0	0	0.45169	1	3168	3168		5.2307	0	1	181720			54844	11547	31434	31435	67112	67112					-0.05839647687764682
VSPWEWNG	8	Unmodified	_VSPWEWNG_					0	0	0		ENST00000526095.1_1_11:2798856-2869230:+|nuORF	ENST00000526095.1_1_11:2798856-2869230:+|nuORF	ENST00000526095.1_1_11:2798856-2869230:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.72149658203125	2	487.721967	973.429381	0.2057	0.00010032	-0.53941	-0.00026308	-0.33371	-0.00016276	487.7215845282184	22.19	3.5966	22.09	20.789	24.386	-0.10034					195	127	2	0	0	0	0.45169	1	3153	3153		5.2307	0	1	169670			54845	11547	31434	31435	67113	67113					-0.05839647687764682
VSPWQWLANWV	11	Unmodified	_VSPWQWLANWV_					0	0	0			REV__ENST00000548483.5_2_12:94288230-94288398:+|nuORF	REV__ENST00000548483.5_2_12:94288230-94288398:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.768798828125	3	462.571545	1384.69281	0.1367	6.3233E-05	2.0862	0.00096504	2.2229	0.0010283	462.57259595333824	35.778	0.10289	35.861	35.771	35.874	0.082355					5	3	2	0	0	0	0.3322	1	7195	7195		2.6312	0	1	38942	+		54846	22188	31435	31436	67114	67114					0.01584767697067946
VSQAEALK	8	Unmodified	_VSQAEALK_					0	0	0		ENSG00000165675|ENST00000394363|ENOX2;nc|ENSG00000165675|Q16206|ENOX2	ENSG00000165675|ENST00000394363|ENOX2	ENSG00000165675|ENST00000394363|ENOX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.23956298828125	2	423.239993	844.465432	0.060999	2.5817E-05	-0.61547	-0.00026049	-0.55447	-0.00023467	423.23959574866336	21.022	1.0803	21.022	20.65	21.731	0					84	37	3	0	0	0	0.44389	1	2820	2820		7.9102	0	1	232490			54847	5989	31436	31437	67115	67115					0.03697809489085557
VSQAPRRQADI	11	Unmodified	_VSQAPRRQADI_					0	0	0			REV__nc|ENSG00000183684|Q86V81|ALYREF	REV__nc|ENSG00000183684|Q86V81|ALYREF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.57275390625	3	414.230071	1239.66838	-0.079718	-3.3022E-05	2.0277	0.00083993	1.948	0.00080691	414.23104975045953	28.715	0.56551	28.715	28.496	29.062	0					38	19	3	0	0	0	0.33064	1	5075	5075		1.3296	0	1	72262	+		54848	18277	31437	31438	67116	67116					0.058135075435757244
VSQDLFQLHIL	11	Unmodified	_VSQDLFQLHIL_					0	0	0		ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2471008300781	3	438.246839	1311.71869	0.01629	7.1392E-06	2.1705	0.00095121	2.1868	0.00095835	438.2471574856614	24.124	1.0497	24.051	23.448	24.498	-0.072559					78	35	4	0	0	0	0.46842	1	3683	3683		2.2527	0.79761	1	70856			54849	3768	31438	31439	67117	67117					0.07529617148725265
VSQEALAIK	9	Unmodified	_VSQEALAIK_					0	0	0		nc|ENSG00000110080|Q11206-7|ST3GAL4;nc|ENSG00000110080|Q11206-3|ST3GAL4;nc|ENSG00000110080|Q11206-6|ST3GAL4;nc|ENSG00000110080|Q11206-5|ST3GAL4;nc|ENSG00000110080|Q11206-2|ST3GAL4;ENSG00000110080|ENST00000444328|ST3GAL4;nc|ENSG00000110080|Q11206-4|ST3GAL4	nc|ENSG00000110080|Q11206-7|ST3GAL4	nc|ENSG00000110080|Q11206-7|ST3GAL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.24371337890625	2	479.782025	957.549496	0.25335	0.00012155	-0.31037	-0.00014891	-0.057014	-2.7354E-05	479.78208103207106	32.79	0.30313	32.844	32.71	33.013	0.054371					13	10	2	0	0	0	0.24636	1	6294	6294		11.495	1.3441	1	76340			54850	2294	31439	31440	67118	67118					0.0690234058599799
VSQEKKTL	8	Unmodified	_VSQEKKTL_					0	0	0		nc|ENSG00000154027|Q9Y6K8-3|AK5;ENSG00000154027|ENST00000354567|AK5;ENST00000317704.8_1_1:77747869-77779575:+|nuORF	nc|ENSG00000154027|Q9Y6K8-3|AK5	nc|ENSG00000154027|Q9Y6K8-3|AK5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.6184997558594	2	466.7742	931.533846	0.098544	4.5998E-05	0.10861	5.0698E-05	0.20716	9.6696E-05	466.7742540746658	24.422	0.68237	24.383	23.909	24.591	-0.038927					36	23	2	0	0	0	0.3408	1	3791	3791		14.838	0	1	115900			54851	5102	31440	31441	67119	67119					0.06534054068947626
VSQFLQVL	8	Unmodified	_VSQFLQVL_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7657470703125	2	467.273835	932.533118	-0.22088	-0.00010321	0.55018	0.00025708	0.3293	0.00015387	467.27398936972594	73.626	0.55774	73.626	73.335	73.893	0					47	19	3	0	0	0	0.32038	1	18888	18888		28.487	0	1	722790			54852	8341	31441	31442	67120	67120					0.06415259419895847
VSQGIEQV	8	Unmodified	_VSQGIEQV_					0	0	0		ENSG00000138380|ENST00000438828|CARF;nc|ENSG00000138380|Q8N187-3|CARF	ENSG00000138380|ENST00000438828|CARF	ENSG00000138380|ENST00000438828|CARF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.88818359375	2	430.229625	858.444697	-0.035548	-1.5294E-05	0.97351	0.00041883	0.93797	0.00040354	430.2301499967264	24.405	0.17985	24.332	24.179	24.359	-0.072559					7	5	2	0	0	0	0.34378	1	3722	3722		3.9444	1.0552	1	35809			54853	4143	31442	31443	67121	67121					0.009812191094283662
VSQHLEDLERK	11	Unmodified	_VSQHLEDLERK_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant;UTRN|p.I1307Nfs*3|1|0.28|ENSG00000152818|chr6:144487642-144487643|-/A|frameshift_variant	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.22320556640625	3	451.908886	1352.70483	0.29232	0.0001321	2.6643	0.001204	2.9566	0.0013361	451.9102368784797	43.582	0.45613	43.666	43.41	43.866	0.083992					24	16	2	0	0	0	0.33189	1	9497	9497		3.5927	1.3399	1	186340			54854	5043	31443	31444	67122	67122					0.04258339649595655
VSQHLEDLERK	11	Unmodified	_VSQHLEDLERK_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant;UTRN|p.I1307Nfs*3|1|0.28|ENSG00000152818|chr6:144487642-144487643|-/A|frameshift_variant	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	451.908886	1352.70483	0.12239	5.5307E-05	2.8319	0.0012798	2.9543	0.0013351	451.91024426237715	43.862	0.35808	43.862	43.681	44.039	0	0.15668	0.00035375	NaN	3.5927	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179690			54855	5043	31443	31444							0.04258339649595655
VSQHLEDLERK	11	Unmodified	_VSQHLEDLERK_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN|p.K1847Ffs*66|1|0.06|ENSG00000152818|chr6:144516945-144516946|-/TTTAA|frameshift_variant;UTRN|p.I1307Nfs*3|1|0.28|ENSG00000152818|chr6:144487642-144487643|-/A|frameshift_variant	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	451.908886	1352.70483	0.27041	0.0001222	2.4302	0.0010982	2.7006	0.0012204	451.91017134660615	43.51	0.4399	43.588	43.425	43.865	0.077515	-0.11736	-0.00019092	NaN	3.5927	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244060			54856	5043	31443	31444							0.04258339649595655
VSQHPFRP	8	Unmodified	_VSQHPFRP_					0	0	0		ENST00000357461.6_1_14:67937818-67938346:-|nuORF	ENST00000357461.6_1_14:67937818-67938346:-|nuORF	ENST00000357461.6_1_14:67937818-67938346:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.8026123046875	2	484.259051	966.503549	0.2026	9.8109E-05	-1.6039	-0.00077671	-1.4013	-0.0006786	484.2583398830746	32.912	0.55381	32.967	32.758	33.312	0.055309					32	19	3	0	0	0	0.33993	1	6424	6424		11.64	0	1	162640			54857	9634	31444	31445	67123	67123					0.018957401944248886
VSQILTHSMHI	11	Unmodified	_VSQILTHSMHI_					0	0	0			REV__ENSG00000185842|ENST00000682510|DNAH14	REV__ENSG00000185842|ENST00000682510|DNAH14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.5543212890625	3	422.56054	1264.65979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.576	1	22.576	22.076	23.076	0								0	0	0	0.3674	1	3187	3187		4.4062	1.0865	1		+		54858	18413	31445	31446	67124	67124					0.038048175827270825
VSQISIEEKVK	11	Unmodified	_VSQISIEEKVK_					0	0	0		ENST00000381161.5_1_X:2748138-2799251:+|nuORF;nc|ENSG00000056998|O15488-4|GYG2;nc|ENSG00000056998|O15488-3|GYG2;nc|ENSG00000056998|O15488-6|GYG2;ENSG00000056998|ENST00000398806|GYG2;nc|ENSG00000056998|O15488|GYG2	ENST00000381161.5_1_X:2748138-2799251:+|nuORF	ENST00000381161.5_1_X:2748138-2799251:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.5902404785156	3	420.578365	1258.71327	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.028	1	28.023	27.523	28.523	-0.0042572								0	0	0	0.34052	1	4838	4838		10.315	0.55098	1				54859	716	31446	31447	67125	67125					0.09425893566208288
VSQKETSK	8	Unmodified	_VSQKETSK_					0	0	0			REV__nc|ENSG00000183780|Q8IY50|SLC35F3	REV__nc|ENSG00000183780|Q8IY50|SLC35F3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.7483215332031	2	453.748182	905.481811	-0.061207	-2.7772E-05	-0.20609	-9.3512E-05	-0.26729	-0.00012128	453.7480578095234	15.678	0.87743	15.678	15.471	16.349	0					71	30	3	0	0	0	0.45431	1	1193	1193		4.3292	0.73274	1	332890	+		54860	18283	31447	31448	67126	67126					0.02528890655196392
VSQKETSK	8	Unmodified	_VSQKETSK_					0	0	0			REV__nc|ENSG00000183780|Q8IY50|SLC35F3	REV__nc|ENSG00000183780|Q8IY50|SLC35F3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.74822998046875	2	453.748182	905.481811	-0.032959	-1.4955E-05	-0.037345	-1.6945E-05	-0.070304	-3.19E-05	453.7480595209603	15.802	0.70651	15.692	15.464	16.171	-0.10981					60	23	3	0	0	0	0.44569	1	1218	1218		7.2892	1.0834	1	390040	+		54861	18283	31447	31448	67127	67127					0.02528890655196392
VSQKETSK	8	Unmodified	_VSQKETSK_					0	0	0			REV__nc|ENSG00000183780|Q8IY50|SLC35F3	REV__nc|ENSG00000183780|Q8IY50|SLC35F3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.7480773925781	2	453.748182	905.481811	-0.028234	-1.2811E-05	-0.00013323	-6.0454E-08	-0.028368	-1.2872E-05	453.74813220441797	15.767	1.1583	15.702	15.457	16.616	-0.064414					85	39	3	0	0	0	0.40115	1	1163	1163		19.257	2.1441	1	365390	+		54862	18283	31447	31448	67128	67128					0.02528890655196392
VSQLKFATRYI	11	Unmodified	_VSQLKFATRYI_					0	0	0			REV__ENSG00000232125|ENST00000452335|DYTN	REV__ENSG00000232125|ENST00000452335|DYTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.5907287597656	3	442.590717	1324.75032	0.29234	0.00012939	-0.46436	-0.00020552	-0.17202	-7.6135E-05	442.59055286451786	46.038	1.1908	46.103	45.647	46.838	0.065048					150	42	5	0	0	0	0.34327	1	10275	10275		18.34	18.34	1	9133300	+		54863	19139	31448	31449	67129	67129					0.10093609902651224
VSQLPTLPPP	10	Unmodified	_VSQLPTLPPP_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.8162841796875	2	524.8055	1047.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.899	1	15.899	15.399	16.399	0								0	0	0	0.37044	1	1165	1165		6.2058	0	1				54864	3273	31449	31450	67130	67130					0.07455200137133033
VSQLTKPI	8	Unmodified	_VSQLTKPI_					0	0	0		nc|ENSG00000133116|Q9UEF7-2|KL	nc|ENSG00000133116|Q9UEF7-2|KL	nc|ENSG00000133116|Q9UEF7-2|KL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.2737121582031	2	443.273835	884.533118	0.27144	0.00012032	-0.22543	-9.9927E-05	0.046014	2.0397E-05	443.27360640520044	35.621	0.98074	35.621	35.276	36.256	0					78	35	3	0	0	0	0.18275	1	7198	7198		46.021	0	1	2403500			54865	12701	31450	31451	67131	67131					0.08623259419891838
VSQPARSGL	9	Unmodified	_VSQPARSGL_					0	0	0			REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.75634765625	2	457.756341	913.498129	-0.1034	-4.733E-05	0.72895	0.00033368	0.62556	0.00028635	457.75663253589767	23.324	0.65934	23.324	23.11	23.769	0					36	22	2	0	0	0	0.18208	1	3424	3424		26.268	5.8145	1	223740	+		54866	19928	31451	31452	67132	67132					0.03792016611953386
VSQPARSGL	9	Unmodified	_VSQPARSGL_					0	0	0			REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.7565002441406	2	457.756341	913.498129	-0.0086964	-3.9808E-06	0.54813	0.00025091	0.53944	0.00024693	457.7565646367996	23.478	0.81286	23.391	23.138	23.951	-0.087608					46	28	2	0	0	0	0.19905	1	3451	3451		23.79	5.6434	1	220400	+		54867	19928	31451	31452	67133	67133					0.03792016611953386
VSQPARSGL	9	Unmodified	_VSQPARSGL_					0	0	0			REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.2403564453125	2	457.756341	913.498129	-0.0086964	-3.9808E-06	0.54813	0.00025091	0.53944	0.00024693	457.7565646367996	23.478	0.81286	23.391	23.138	23.951	-0.087608					46	28	2	0	0	0	0.24471	1	3502	3502		17.113	2.2746	1	220400	+		54868	19928	31451	31452	67134	67134					0.03792016611953386
VSQPARSGL	9	Unmodified	_VSQPARSGL_					0	0	0			REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7563781738281	2	457.756341	913.498129	0.16724	7.6554E-05	0.28694	0.00013135	0.45418	0.0002079	457.7563868689676	23.4	0.79388	23.355	23.109	23.903	-0.044867					44	27	2	0	0	0	0.11201	1	3435	3435		36.506	12.486	1	235740	+		54869	19928	31451	31452	67135	67135					0.03792016611953386
VSQPARSGL	9	Unmodified	_VSQPARSGL_					0	0	0			REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	457.756341	913.498129	0.16724	7.6554E-05	0.28694	0.00013135	0.45418	0.0002079	457.7563868689676	23.4	0.79388	23.355	23.109	23.903	-0.044867	-0.0018551	-0.00018831	NaN	36.506	44	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235740	+		54870	19928	31451	31452							0.03792016611953386
VSQPHWRRSGL	11	Unmodified	_VSQPHWRRSGL_					0	0	0			REV__nc|ENSG00000171867|F7VJQ1|PRNP	REV__nc|ENSG00000171867|F7VJQ1|PRNP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.5735778808594	3	441.57406	1321.70035	-0.14071	-6.2132E-05	0.25838	0.0001141	0.11768	5.1963E-05	441.5741723476223	14.905	0.67574	14.795	14.362	15.038	-0.10981					54	23	3	0	0	0	0.45202	1	825	825		4.4062	0	1	317690	+		54871	23084	31452	31453	67136	67136					0.05236920017364355
VSQVERSL	8	Unmodified	_VSQVERSL_					0	0	0		ENSG00000277858|ENST00000354514|H2AB2;ENSG00000277745|ENST00000615853|H2AB3;ENSG00000274183|ENST00000620016|H2AB1	ENSG00000277858|ENST00000354514|H2AB2	ENSG00000277858|ENST00000354514|H2AB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7352294921875	2	459.256174	916.497795	-0.056871	-2.6118E-05	-0.97422	-0.00044742	-1.0311	-0.00047353	459.2556309023977	27.457	0.48188	27.446	27.132	27.614	-0.01156					24	16	2	0	0	0	0.34039	1	4708	4708		15.847	0	1	198280			54872	8711	31453	31454	67137	67137					0.03620596892096728
VSQVLANL	8	Unmodified	_VSQVLANL_					0	0	0		nc|ENSG00000167711|P08697-2|SERPINF2;ENSG00000167711|ENST00000453066|SERPINF2	nc|ENSG00000167711|P08697-2|SERPINF2	nc|ENSG00000167711|P08697-2|SERPINF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.5543212890625	2	422.25036	842.486168	-0.2658	-0.00011223	0.68955	0.00029116	0.42375	0.00017893	422.25065817760174	22.728	0.31179	22.728	22.563	22.875	0					18	10	2	0	0	0	0.34319	1	3187	3187		5.7604	0	1	56718			54873	6204	31454	31455	67138	67138					0.05862399868760804
VSQVLANL	8	Unmodified	_VSQVLANL_					0	0	0		nc|ENSG00000167711|P08697-2|SERPINF2;ENSG00000167711|ENST00000453066|SERPINF2	nc|ENSG00000167711|P08697-2|SERPINF2	nc|ENSG00000167711|P08697-2|SERPINF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	422.25036	842.486168	-0.10569	-4.4629E-05	-0.042593	-1.7985E-05	-0.14829	-6.2613E-05	422.25019309686917	22.867	0.34131	22.822	22.583	22.925	-0.044867	0.046914	-0.00046494	NaN	5.7604	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49094			54874	6204	31454	31455							0.05862399868760804
VSQVRVPK	8	Unmodified	_VSQVRVPK_					0	0	0		UBA1|p.K296R|1|0.04|ENSG00000130985|chrX:47202231-47202231|A/G|missense_variant	UBA1|p.K296R|1|0.04|ENSG00000130985|chrX:47202231-47202231|A/G|missense_variant	UBA1|p.K296R|1|0.04|ENSG00000130985|chrX:47202231-47202231|A/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.24041748046875	2	456.784902	911.55525	-0.064546	-2.9484E-05	-0.044445	-2.0302E-05	-0.10899	-4.9785E-05	456.78477265898414	23.566	0.33327	23.566	23.336	23.669	0					15	11	2	0	0	0	0.34353	1	3490	3490		4.756	0	1	32539			54875	23407	31455	31456	67139	67139					0.09593483888318133
VSQVVNLAKKK	11	Unmodified	_VSQVVNLAKKK_					0	0	0			REV__nc|ENSG00000198000|Q76FK4-2|NOL8	REV__nc|ENSG00000198000|Q76FK4-2|NOL8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5526123046875	3	405.259079	1212.75541	-0.29955	-0.0001214	-0.12093	-4.9009E-05	-0.42049	-0.00017041	405.2591617091601	22.404	0.37303	22.359	22.156	22.529	-0.044867					18	12	2	0	0	0	0.32951	1	3119	3119		1.1098	0	1	37295	+		54876	18788	31456	31457	67140	67140					0.15753913765252037
VSQWPHSFPSP	11	Unmodified	_VSQWPHSFPSP_					0	0	0			REV__ENST00000373433.8_1_20:36662140-36662245:+|nuORF	REV__ENST00000373433.8_1_20:36662140-36662245:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.55780029296875	3	423.540134	1267.59857	-0.40013	-0.00016947	-1.726	-0.00073104	-2.1261	-0.00090051	423.5393713925331	13.394	0.27712	13.327	13.215	13.493	-0.067496					18	9	4	0	0	0	0.33318	1	456	456		0.45452	0	1	23719	+		54877	20437	31457	31458	67141	67141					-0.024523711250594715
VSRAHASWKP	10	Unmodified	_VSRAHASWKP_					0	0	0		nc|nan|Q5SNV9-3|C1orf167;ENSG00000215910|ENST00000688073|C1orf167;nc|nan|Q5SNV9-2|C1orf167	nc|nan|Q5SNV9-3|C1orf167	nc|nan|Q5SNV9-3|C1orf167	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.8097534179688	2	569.809439	1137.60433	-0.013531	-7.7102E-06	0.94748	0.00053988	0.93395	0.00053217	569.8099049932415	61.589	1.187	61.686	61.385	62.572	0.096985					81	43	2	0	0	0	0.3258	2	15110	15110;15157		17.113	17.113	1	3524500			54878	13027	31458	31459	67142;67143	67142					0.04102772177270708
VSRAHASWKP	10	Unmodified	_VSRAHASWKP_					0	0	0		nc|nan|Q5SNV9-3|C1orf167;ENSG00000215910|ENST00000688073|C1orf167;nc|nan|Q5SNV9-2|C1orf167	nc|nan|Q5SNV9-3|C1orf167	nc|nan|Q5SNV9-3|C1orf167	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.809439	1137.60433	0.13311	7.5849E-05	0.95695	0.00054528	1.0901	0.00062113	569.809927122153	61.674	1.1739	61.674	61.437	62.611	0	-0.0051703	2.0046E-05	NaN	17.113	85	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3220600			54879	13027	31458	31459							0.04102772177270708
VSRAHASWKP	10	Unmodified	_VSRAHASWKP_					0	0	0		nc|nan|Q5SNV9-3|C1orf167;ENSG00000215910|ENST00000688073|C1orf167;nc|nan|Q5SNV9-2|C1orf167	nc|nan|Q5SNV9-3|C1orf167	nc|nan|Q5SNV9-3|C1orf167	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	569.809439	1137.60433	-0.057969	-3.3031E-05	0.90842	0.00051763	0.85045	0.0004846	569.8098721341105	61.687	1.0881	61.679	61.377	62.465	-0.0085526	-0.0011101	-3.5256E-05	NaN	17.113	78	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3106200			54880	13027	31458	31459							0.04102772177270708
VSRDFSRVF	9	Unmodified	_VSRDFSRVF_					0	0	0			REV__ENST00000493541.1_1_6:83839942-83844118:+|nuORF	REV__ENST00000493541.1_1_6:83839942-83844118:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7738037109375	2	556.795998	1111.57744	0.12021	6.6933E-05	-4.3583	-0.0024267	-4.2381	-0.0023597	556.7928359748923	26	0.46389	25.978	25.579	26.043	-0.022238					24	16	3	0	0	0	0.27726	1	4190	4190		12.241	2.8575	1	107350	+		54881	21640	31459	31460	67144	67144					0.026116635660855536
VSREAKRTP	9	Unmodified	_VSREAKRTP_					0	0	0			REV__nc|ENSG00000196684|Q96JZ2-2|HSH2D	REV__nc|ENSG00000196684|Q96JZ2-2|HSH2D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7138671875	2	522.301447	1042.58834	0.28716	0.00014998	-0.094475	-4.9344E-05	0.19269	0.00010064	522.8026417940035	31.211	0.44307	31.211	31.033	31.476	0					31	15	3	0	0	0	0.24636	1	5862	5862		16.149	1.3108	1	128020	+		54882	18677	31460	31461	67145	67145					0.06875065940380409
VSREAKRTP	9	Unmodified	_VSREAKRTP_					0	0	0			REV__nc|ENSG00000196684|Q96JZ2-2|HSH2D	REV__nc|ENSG00000196684|Q96JZ2-2|HSH2D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7138671875	2	522.301447	1042.58834	0.13679	7.1447E-05	-0.028921	-1.5105E-05	0.10787	5.6342E-05	522.8026835132945	31.226	0.49121	31.268	31.052	31.543	0.042364					29	17	2	0	0	0	0.25527	1	5845	5845		8.7454	1.4562	1	141810	+		54883	18677	31460	31461	67146	67146					0.06875065940380409
VSREQRFRY	9	Unmodified	_VSREQRFRY_					0	0	0			REV__ENSG00000167513|ENST00000301019|CDT1	REV__ENSG00000167513|ENST00000301019|CDT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.57275390625	3	414.223028	1239.64725	0.25201	0.00010439	-1.9383	-0.00080288	-1.6863	-0.00069849	414.2221359144734	28.909	0.40886	28.905	28.599	29.008	-0.0042572					17	13	2	0	0	0	0.25527	1	5079	5079		8.7454	4.8691	1	40125	+		54884	17388	31461	31462	67147	67147					0.03701542234716726
VSRHRFAK	8	Unmodified	_VSRHRFAK_					0	0	0			REV__ENSG00000186812|ENST00000330501|ZNF397	REV__ENSG00000186812|ENST00000330501|ZNF397	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.2647705078125	2	500.793592	999.572632	0.31167	0.00015608	-1.3966	-0.00069943	-1.085	-0.00054335	500.7928252319854	30.802	0.42779	30.83	30.496	30.924	0.027946					21	14	2	0	0	0	0.33293	1	5649	5649		20.454	2.3186	1	73269	+		54885	18469	31462	31463	67148	67148					0.07282824213973527
VSRIRRQPLL	10	Unmodified	_VSRIRRQPLL_					0	0	0			REV__ENST00000239223.3_1_5:172197224-172198187:-|nuORF	REV__ENST00000239223.3_1_5:172197224-172198187:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.26605224609375	3	413.266568	1236.77787	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.502	1	23.463	22.963	23.963	-0.038927								0	0	0	0.38065	1	3465	3465		1.9064	0.57673	1		+		54886	19488	31463	31464	67149	67149					0.16895557953557727
VSRIYQGP	8	Unmodified	_VSRIYQGP_					0	0	0			REV__ENST00000564033.1_1_16:2086312-2087982:+|nuORF	REV__ENST00000564033.1_1_16:2086312-2087982:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.2537536621094	2	460.253434	918.492316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.25	1	37.25	36.75	37.75	0								0	0	0	0.35466	1	7652	7652		12.532	0	1		+		54887	13654	31464	31465	67150	67150					0.029809181002860896
VSRKAFEAR	9	Unmodified	_VSRKAFEAR_					0	0	0			REV__TPM2|p.E243K|1|0.22|ENSG00000198467|chr9:35684291-35684291|C/T|missense_variant	REV__TPM2|p.E243K|1|0.22|ENSG00000198467|chr9:35684291-35684291|C/T|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.29296875	2	532.30399	1062.59343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.708	1	30.736	30.236	31.236	0.027946								0	0	0	0.21673	1	5653	5653		17.113	0	1		+		54888	23341	31465	31466	67151	67151					0.06463369802986563
VSRKAKSQNRQ	11	Unmodified	_VSRKAKSQNRQ_					0	0	0		MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant;MGA|p.R2396Qfs*8|1|0.14|ENSG00000174197|chr15:41757835-41757835|G/-|frameshift_variant;nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;MGA|p.Q992Rfs*2|1|0.24|ENSG00000174197|chr15:41711239-41711239|C/-|frameshift_variant	MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant	MGA|p.L1186Cfs*13|1|0.1|ENSG00000174197|chr15:41727305-41727305|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.2320556640625	3	434.584736	1300.73238	-0.28978	-0.00012593	0.30773	0.00013374	0.017956	7.8035E-06	434.5850090620941	22.609	0.48462	22.609	22.331	22.815	0					23	16	2	0	0	0	0.33303	1	3222	3222		1.1098	0.6038	1	58706			54889	6777	31466	31467	67152	67152					0.09404287700499481
VSRKEKRNF	9	Unmodified	_VSRKEKRNF_					0	0	0		nc|ENSG00000211752|A0A0K0K1C4|TRBV27	nc|ENSG00000211752|A0A0K0K1C4|TRBV27	nc|ENSG00000211752|A0A0K0K1C4|TRBV27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3358764648438	2	582.335821	1162.65709	0.072974	4.2495E-05	0.59103	0.00034418	0.664	0.00038667	582.3360179155792	15.579	0.43589	15.47	15.204	15.64	-0.10981					26	14	3	0	0	0	0.35563	1	1100	1100		0.52476	0	1	61367			54890	12927	31467	31468	67153	67153					0.0822673024008509
VSRKEKRNF	9	Unmodified	_VSRKEKRNF_					0	0	0		nc|ENSG00000211752|A0A0K0K1C4|TRBV27	nc|ENSG00000211752|A0A0K0K1C4|TRBV27	nc|ENSG00000211752|A0A0K0K1C4|TRBV27	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	582.335821	1162.65709	0.072974	4.2495E-05	0.59103	0.00034418	0.664	0.00038667	582.3360179155792	15.579	0.43589	15.47	15.204	15.64	-0.10981	0.0050314	-1.8312E-05	NaN	0.52476	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61367			54891	12927	31467	31468							0.0822673024008509
VSRKEKRNF	9	Unmodified	_VSRKEKRNF_					0	0	0		nc|ENSG00000211752|A0A0K0K1C4|TRBV27	nc|ENSG00000211752|A0A0K0K1C4|TRBV27	nc|ENSG00000211752|A0A0K0K1C4|TRBV27	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	582.335821	1162.65709	0.052867	3.0786E-05	0.61442	0.0003578	0.66728	0.00038858	582.3359266012166	15.562	0.42083	15.498	15.216	15.636	-0.064414	0.03306	8.9276E-06	NaN	0.52476	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75800			54892	12927	31467	31468							0.0822673024008509
VSRLEQDEYAL	11	Unmodified	_VSRLEQDEYAL_					0	0	0		nc|ENSG00000138029|P55084-2|HADHB;ENSG00000138029|ENST00000317799|HADHB	nc|ENSG00000138029|P55084-2|HADHB	nc|ENSG00000138029|P55084-2|HADHB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.2418212890625	3	441.557741	1321.6514	0.070094	3.0951E-05	0.57018	0.00025177	0.64028	0.00028272	441.5578643234747	22.149	0.39429	22.149	21.966	22.36	0					26	13	3	0	0	0	0.33303	1	3077	3077		2.4348	0	1	59579			54893	4105	31468	31469	67154	67154					0.003435421471067457
VSRLIFVR	8	Unmodified	_VSRLIFVR_					0	0	0		ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7664794921875	2	495.316369	988.618185	0.3643	0.00018044	0.71588	0.00035459	1.0802	0.00053503	495.3165640038987	48.64	1.2365	48.673	48.419	49.655	0.032043					73	44	2	0	0	0	0.34319	1	11420	11420		0.69038	0	1	1345200			54894	1255	31469	31470	67155	67155					0.12342049676374245
VSRLYAVAL	9	Unmodified	_VSRLYAVAL_					0	0	0			REV__ENSG00000168890|ENST00000334462|TMEM150A	REV__ENSG00000168890|ENST00000334462|TMEM150A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7481384277344	2	496.300384	990.586216	0.37198	0.00018461	0.57853	0.00028712	0.95051	0.00047174	496.30046887834084	67.251	0.50744	67.329	67.15	67.657	0.078041					39	17	3	0	0	0	0.24993	1	16962	16962		13.042	2.9685	1	460590	+		54895	17486	31470	31471	67156	67156					0.0905463720255284
VSRPCLLL	8	Unmodified	_VSRPCLLL_					0	0	0		ENST00000371600.7_1_9:139937522-139937591:-|nuORF	ENST00000371600.7_1_9:139937522-139937591:-|nuORF	ENST00000371600.7_1_9:139937522-139937591:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.28692626953125	2	450.770406	899.526258	0.22684	0.00010225	-0.12351	-5.5675E-05	0.10333	4.6579E-05	450.77028889624825	55.421	0.7465	55.421	55.274	56.021	0					32	26	2	0	0	0	0.32537	1	13200	13200		18.146	0	1	188160			54896	9826	31471	31472	67157	67157					0.07247623267699055
VSRPCLLL	8	Unmodified	_VSRPCLLL_					0	0	0		ENST00000371600.7_1_9:139937522-139937591:-|nuORF	ENST00000371600.7_1_9:139937522-139937591:-|nuORF	ENST00000371600.7_1_9:139937522-139937591:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.28692626953125	2	450.770406	899.526258	0.5172	0.00023314	-0.48492	-0.00021859	0.032278	1.455E-05	450.77008398302934	54.799	0.97568	54.799	54.374	55.35	0					47	35	2	0	0	0	0.32537	1	13200	13200		18.146	0	1	254320			54897	9826	31471	31472	67158	67158					0.07247623267699055
VSRPFRGQ	8	Unmodified	_VSRPFRGQ_					0	0	0			REV__ENSG00000188869|ENST00000359440|TMC3	REV__ENSG00000188869|ENST00000359440|TMC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.917236328125	2	473.764501	945.514448	0.20182	9.5613E-05	-0.97705	-0.00046289	-0.77523	-0.00036728	473.76420606239697	30.279	0.27786	30.279	30.113	30.391	0					14	9	2	0	0	0	0.34131	1	5503	5503		7.9102	1.187	1	102610	+		54898	18577	31472	31473	67159	67159					0.03951142568712385
VSRQVHVK	8	Unmodified	_VSRQVHVK_					0	0	0			REV__ENSG00000136478|ENST00000584379|TEX2	REV__ENSG00000136478|ENST00000584379|TEX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.2481689453125	2	476.787976	951.561398	-0.14241	-6.7898E-05	1.7185	0.00081938	1.5761	0.00075148	476.7879233193488	13.405	0.61457	13.338	12.905	13.519	-0.067496					51	21	5	0	0	0	0.34408	1	315	315		2.3027	0	1	102940	+		54899	15810	31473	31474	67160	67160					0.08368002119846096
VSRREADT	8	Unmodified	_VSRREADT_					0	0	0			REV__ENSG00000164070|ENST00000296464|HSPA4L	REV__ENSG00000164070|ENST00000296464|HSPA4L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.77392578125	2	467.241055	932.467557	-0.00023963	-1.1197E-07	3.0866	0.0014422	3.0863	0.0014421	467.2417730299001	15.778	0.1496	15.713	15.605	15.754	-0.064413					6	4	2	0	0	0	0.34294	1	1132	1132		7.2892	2.0586	1	21497	+		54900	17122	31474	31475	67161	67161					-0.0013776177310091953
VSRRHNLAI	9	Unmodified	_VSRRHNLAI_					0	0	0			REV__ENST00000393966.1_1_16:67314567-67316137:+|nuORF	REV__ENST00000393966.1_1_16:67314567-67316137:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3174438476562	2	533.317432	1064.62031	0.17923	9.5586E-05	-0.18409	-9.8181E-05	-0.0048657	-2.5949E-06	533.317306158998	15.257	0.41618	15.192	15.041	15.457	-0.064413					27	13	3	0	0	0	0.33276	1	990	990		3.9444	0	1	130270	+		54901	20615	31475	31476	67162	67162					0.09058478414158344
VSRSVTLVI	9	Unmodified	_VSRSVTLVI_					0	0	0		ENST00000604988.1_1_6:338073-350865:+|nuORF;nc|ENSG00000112679|Q9NRW4|DUSP22;ENSG00000112679|ENST00000419235|DUSP22	ENST00000604988.1_1_6:338073-350865:+|nuORF	ENST00000604988.1_1_6:338073-350865:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.30517578125	2	487.305667	972.596781	0.78022	0.00038021	-0.5785	-0.00028191	0.20172	9.83E-05	487.30545056518713	55.998	0.83608	56.069	55.618	56.454	0.070885					66	30	3	0	0	0	0.17277	1	13460	13460		27.629	0	1	4339600			54902	2451	31476	31477	67163	67163					0.10938619856995047
VSRTHEYQ	8	Unmodified	_VSRTHEYQ_					0	0	0			REV__ENST00000320982.3_1_22:30886116-30899718:-|nuORF	REV__ENST00000320982.3_1_22:30886116-30899718:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.78741455078125	2	510.24888	1018.48321	0.092572	4.7235E-05	-0.10253	-5.2315E-05	-0.0099556	-5.0798E-06	510.2484704830224	23.141	0.54529	23.141	22.791	23.336	0					31	18	2	0	0	0	0.34353	1	3410	3410		4.756	0	1	54669	+		54903	15626	31477	31478	67164	67164					-0.02529475256051228
VSRTHEYQ	8	Unmodified	_VSRTHEYQ_					0	0	0			REV__ENST00000320982.3_1_22:30886116-30899718:-|nuORF	REV__ENST00000320982.3_1_22:30886116-30899718:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	510.24888	1018.48321	0.092543	4.722E-05	-0.21436	-0.00010938	-0.12182	-6.2159E-05	510.2486219024854	23.207	0.44376	23.119	22.909	23.353	-0.087608	-0.058452	-2.8385E-05	NaN	4.756	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70330	+		54904	15626	31477	31478							-0.02529475256051228
VSRTHEYQ	8	Unmodified	_VSRTHEYQ_					0	0	0			REV__ENST00000320982.3_1_22:30886116-30899718:-|nuORF	REV__ENST00000320982.3_1_22:30886116-30899718:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	510.24888	1018.48321	0.22184	0.00011319	-0.25101	-0.00012808	-0.02917	-1.4884E-05	510.24856947432124	23.317	0.40739	23.272	22.951	23.358	-0.044867	0.094994	-6.5784E-05	NaN	4.756	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45771	+		54905	15626	31477	31478							-0.02529475256051228
VSRVDLLRFIR	11	Unmodified	_VSRVDLLRFIR_					0	0	0			REV__nc|ENSG00000100225|Q9Y3I1-3|FBXO7	REV__nc|ENSG00000100225|Q9Y3I1-3|FBXO7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.2788391113281	3	458.617377	1372.8303	-0.057038	-2.6158E-05	-0.15309	-7.0211E-05	-0.21013	-9.637E-05	458.6174787200429	29.681	0.29275	29.694	29.481	29.773	0.013474					14	9	2	0	0	0	0.32833	1	5322	5322		13.535	4.7831	1	120460	+		54906	14170	31478	31479	67165	67165					0.1588009629649605
VSRVEKAKQKS	11	Unmodified	_VSRVEKAKQKS_					0	0	0		ENST00000497437.1_1_1:43279512-43282215:-|nuORF;ENSG00000177868|ENST00000372521|SVBP	ENST00000497437.1_1_1:43279512-43282215:-|nuORF	ENST00000497437.1_1_1:43279512-43282215:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.585693359375	3	420.585854	1258.73573	-0.34697	-0.00014593	0.2688	0.00011305	-0.078172	-3.2878E-05	420.58590468415326	25.106	0.57212	25.075	24.862	25.434	-0.031408					36	19	3	0	0	0	0.42246	1	3960	3960		8.2864	2.0521	1	91470			54907	7020	31479	31480	67166	67166					0.11671537754477868
VSRVEKAKQKS	11	Unmodified	_VSRVEKAKQKS_					0	0	0		ENST00000497437.1_1_1:43279512-43282215:-|nuORF;ENSG00000177868|ENST00000372521|SVBP	ENST00000497437.1_1_1:43279512-43282215:-|nuORF	ENST00000497437.1_1_1:43279512-43282215:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	420.585854	1258.73573	-0.09988	-4.2008E-05	-0.28741	-0.00012088	-0.38729	-0.00016289	420.5857162489832	25.082	0.36452	25.082	24.902	25.267	0	0.0018884	-0.00038498	NaN	8.2864	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101460			54908	7020	31479	31480							0.11671537754477868
VSRVEKAKQKS	11	Unmodified	_VSRVEKAKQKS_					0	0	0		ENST00000497437.1_1_1:43279512-43282215:-|nuORF;ENSG00000177868|ENST00000372521|SVBP	ENST00000497437.1_1_1:43279512-43282215:-|nuORF	ENST00000497437.1_1_1:43279512-43282215:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	420.585854	1258.73573	-0.12891	-5.4219E-05	0.10868	4.571E-05	-0.02023	-8.5084E-06	420.58574436682903	25.139	0.44721	25.083	24.918	25.365	-0.055931	0.0030576	0.00011478	NaN	8.2864	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127130			54909	7020	31479	31480							0.11671537754477868
VSRVQYSR	8	Unmodified	_VSRVQYSR_					0	0	0		ENST00000539243.6_1_19:1086270-1086483:+|nuORF	ENST00000539243.6_1_19:1086270-1086483:+|nuORF	ENST00000539243.6_1_19:1086270-1086483:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2671813964844	2	497.775065	993.535577	0.18965	9.4405E-05	-0.064868	-3.229E-05	0.12479	6.2115E-05	497.774903052833	17.499	0.34232	17.381	17.231	17.573	-0.11739					16	11	2	0	0	0	0.4354	1	1661	1661		10.824	0	1	28792			54910	11709	31480	31481	67167	67167					0.038551078775640235
VSRVREPFME	10	Unmodified	_VSRVREPFME_					0	0	0			REV__ENST00000416399.2_1_10:120403290-120403707:+|nuORF	REV__ENST00000416399.2_1_10:120403290-120403707:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.21649169921875	3	417.216774	1248.62849	0.0039866	1.6633E-06	-0.57274	-0.00023896	-0.56875	-0.00023729	417.21646127832105	18.503	0.80013	18.385	18.089	18.89	-0.11739					62	27	3	0	0	0	0.40992	1	1960	1960		0.69767	0	1	356140	+		54911	20818	31481	31482	67168	67168					0.014122445486009383
VSSANMMSGIS	11	Unmodified	_VSSANMMSGIS_					0	0	0		ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	ENSG00000101266|ENST00000217244|CSNK2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2443237304688	2	542.244092	1082.47363	0.15163	8.2219E-05	0.26281	0.00014251	0.41444	0.00022473	542.244430794901	13.742	0.61385	13.637	13.435	14.049	-0.10466					59	21	4	0	0	0	0.44192	1	537	537		5.7319	1.4026	1	366990			54912	1678	31482	31483	67169	67169					-0.06430747648096258
VSSCFSPSIS	10	Unmodified	_VSSCFSPSIS_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7734680175781	2	507.23405	1012.45355	0.25214	0.00012789	0.11558	5.8628E-05	0.36772	0.00018652	507.2340025389108	24.031	0.74471	23.958	23.614	24.359	-0.072559					36	24	2	0	0	0	0.31358	1	3697	3697		13.906	5.9959	1	60002			54913	8266	31483	31484	67170	67170					-0.05218175316406359
VSSESLFAK	9	Unmodified	_VSSESLFAK_					0	0	0			REV__ENSG00000197748|ENST00000357060|CFAP43	REV__ENSG00000197748|ENST00000357060|CFAP43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.8028564453125	2	484.258382	966.502212	0.23914	0.0001158	0.063383	3.0694E-05	0.30252	0.0001465	484.2582493641049	32.886	0.44083	32.941	32.791	33.232	0.054371					25	15	2	0	0	0	0.2451	1	6394	6394		10.824	0	1	182290	+		54914	18763	31484	31485	67171	67171					0.017620613150029385
VSSFSKSTR	9	Unmodified	_VSSFSKSTR_					0	0	0		ENST00000394283.5_1_6:41700498-41700744:-|nuORF	ENST00000394283.5_1_6:41700498-41700744:-|nuORF	ENST00000394283.5_1_6:41700498-41700744:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.76727294921875	2	499.766906	997.519259	0.36937	0.0001846	0.46004	0.00022991	0.82941	0.00041451	499.76703308444917	29.034	0.58703	29.047	28.802	29.389	0.012266					51	20	3	0	0	0	0.088443	1	5145	5145		39.95	0	1	602630			54915	10067	31485	31486	67172	67172					0.02039981920813716
VSSFSKSTR	9	Unmodified	_VSSFSKSTR_					0	0	0		ENST00000394283.5_1_6:41700498-41700744:-|nuORF	ENST00000394283.5_1_6:41700498-41700744:-|nuORF	ENST00000394283.5_1_6:41700498-41700744:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7582092285156	2	499.766906	997.519259	0.20722	0.00010356	0.66709	0.00033339	0.87431	0.00043695	499.76709500117727	29.087	0.77858	29.1	28.728	29.507	0.013474					59	27	3	0	0	0	0.14786	1	5113	5113		31.268	0	1	522920			54916	10067	31485	31486	67173	67173					0.02039981920813716
VSSGKLLIK	9	Unmodified	_VSSGKLLIK_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-5|AIFM1;nc|ENSG00000156709|O95831-2|AIFM1;nc|ENSG00000156709|O95831-3|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.7528381347656	2	472.810585	943.606617	0.0083767	3.9606E-06	-0.22579	-0.00010675	-0.21741	-0.00010279	472.8104168834586	26.094	0.50311	26.055	25.813	26.316	-0.038671					24	17	2	0	0	0	0.23784	1	4277	4277		13.906	0.86358	1	72265			54917	5251	31486	31487	67174	67174					0.13255807862378788
VSSGQLYTHI	10	Unmodified	_VSSGQLYTHI_					0	0	0		ENST00000486973.1_1_6:53156652-53156745:-|nuORF	ENST00000486973.1_1_6:53156652-53156745:-|nuORF	ENST00000486973.1_1_6:53156652-53156745:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7904052734375	2	552.787838	1103.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.183	1	61.183	60.683	61.683	0								0	0	0	0.24161	1	15013	15013		34.932	3.6637	1				54918	11110	31487	31488	67175	67175					0.013485376093512969
VSSGRLQAR	9	Unmodified	_VSSGRLQAR_					0	0	0		ENST00000530353.1_1_8:145980074-145980368:-|nuORF	ENST00000530353.1_1_8:145980074-145980368:-|nuORF	ENST00000530353.1_1_8:145980074-145980368:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.3643493652344	2	487.280515	972.546476	0.063997	3.1184E-05	-4.2811	-0.0020861	-4.2171	-0.0020549	487.2793839471055	15.176	0.56211	15.066	14.818	15.38	-0.10981					50	19	4	0	0	0	0.25622	1	1044	1044		7.2892	0	1	134540			54919	11616	31488	31489	67176	67176					0.05910510251840151
VSSGRLQAR	9	Unmodified	_VSSGRLQAR_					0	0	0		ENST00000530353.1_1_8:145980074-145980368:-|nuORF	ENST00000530353.1_1_8:145980074-145980368:-|nuORF	ENST00000530353.1_1_8:145980074-145980368:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	487.280515	972.546476	-0.015495	-7.5503E-06	-5.241	-0.0025538	-5.2565	-0.0025614	487.2793387703303	15.051	0.58969	15.051	14.759	15.348	0	-0.029087	-0.00024358	NaN	7.2892	53	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134400			54920	11616	31488	31489							0.05910510251840151
VSSGRLQAR	9	Unmodified	_VSSGRLQAR_					0	0	0		ENST00000530353.1_1_8:145980074-145980368:-|nuORF	ENST00000530353.1_1_8:145980074-145980368:-|nuORF	ENST00000530353.1_1_8:145980074-145980368:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	487.280515	972.546476	0.013357	6.5084E-06	-5.4622	-0.0026616	-5.4489	-0.0026551	487.2792170998155	15.188	0.56983	15.123	14.79	15.36	-0.064414	0.04297	-0.00045919	NaN	7.2892	43	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123620			54921	11616	31488	31489							0.05910510251840151
VSSHLTTH	8	Unmodified	_VSSHLTTH_					0	0	0		nc|ENSG00000160352|Q96N38-3|ZNF714;ENST00000601416.1_19:21281704-21301132:+|nuORF;nc|ENSG00000160352|Q96N38-2|ZNF714;nc|ENSG00000160352|Q96N38|ZNF714;ENSG00000160352|ENST00000456283|ZNF714	nc|ENSG00000160352|Q96N38-3|ZNF714	nc|ENSG00000160352|Q96N38-3|ZNF714	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.5735778808594	2	441.227417	880.44028	-0.1403	-6.1903E-05	0.86709	0.00038258	0.72679	0.00032068	441.22777026109077	14.869	0.33649	14.759	14.618	14.955	-0.10981					18	11	2	0	0	0	0.34337	1	825	825		5.2307	0	1	33935			54922	5461	31489	31490	67177	67177					-0.004722453134831994
VSSKRIEVT	9	Unmodified	_VSSKRIEVT_					0	0	0			REV__ENSG00000151789|ENST00000281523|ZNF385D	REV__ENSG00000151789|ENST00000281523|ZNF385D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7711181640625	2	509.798206	1017.58186	-0.13649	-6.9583E-05	-0.14349	-7.3149E-05	-0.27998	-0.00014273	509.79804353736785	13.295	0.31412	13.227	13.073	13.388	-0.067496					19	10	3	0	0	0	0.25988	1	363	363		3.9444	0	1	50969	+		54923	16558	31490	31491	67178	67178					0.07377127988979737
VSSLGSSIYL	10	Unmodified	_VSSLGSSIYL_					0	0	0		ENST00000229328.9_1_12:120119136-120119388:+|nuORF	ENST00000229328.9_1_12:120119136-120119388:+|nuORF	ENST00000229328.9_1_12:120119136-120119388:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7872314453125	2	513.279315	1024.54408	0.83088	0.00042647	-0.82696	-0.00042446	0.0039224	2.0133E-06	513.2787605667002	47.291	0.47918	47.345	47.093	47.572	0.054375					23	17	2	0	0	0	0.31358	1	10780	10780		9.3831	1.473	1	200130			54924	8855	31491	31492	67179	67179					0.03278617003502404
VSSLRKFLA	9	Unmodified	_VSSLRKFLA_					0	0	0			REV__ENST00000471640.1_1_2:183799522-183806825:-|nuORF	REV__ENST00000471640.1_1_2:183799522-183806825:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.226806640625	2	510.813659	1019.61277	-0.038916	-1.9879E-05	-0.34511	-0.00017629	-0.38403	-0.00019617	511.3144694683304	18.341	0.28728	18.283	18.145	18.432	-0.058172					13	9	2	0	0	0	0.25526	1	1872	1872		7.9102	1.187	1	33390	+		54925	13626	31492	31493	67180	67180					0.10374326093904074
VSSLSRTYK	9	Unmodified	_VSSLSRTYK_					0	0	0		ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7911987304688	2	520.790381	1039.56621	0.14625	7.6164E-05	0.28689	0.00014941	0.43314	0.00022557	520.7904865438966	25.878	0.93002	25.84	25.531	26.461	-0.038671					60	32	2	0	0	0	0.29176	1	4227	4227		10.074	0	1	268830			54926	7878	31493	31494	67181	67181					0.048008414719333814
VSSLVSNLL	9	Unmodified	_VSSLVSNLL_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2764892578125	2	466.276575	930.538597	-0.069114	-3.2226E-05	0.05653	2.6358E-05	-0.012584	-5.8679E-06	466.27649744277056	42.848	1.0567	42.848	42.306	43.362	0					89	38	3	0	0	0	0.019245	5	9401	9304;9353;9401;9442;9457		65.235	19.535	1	1745400			54927	8413	31494	31495	67182;67183;67184;67185;67186	67184					0.07054938211717854
VSSLVSNLL	9	Unmodified	_VSSLVSNLL_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2765808105469	2	466.276575	930.538597	-0.070742	-3.2985E-05	-0.1313	-6.1223E-05	-0.20204	-9.4208E-05	466.2763971459104	42.733	1.1161	42.818	42.211	43.327	0.085197					96	40	3	0	0	0	0.03069	2	9337	9299;9337		60.074	6.6228	1	2001500			54928	8413	31494	31495	67187;67188	67188					0.07054938211717854
VSSLVSNLL	9	Unmodified	_VSSLVSNLL_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.27655029296875	2	466.276575	930.538597	0.054311	2.5324E-05	-0.1272	-5.931E-05	-0.072888	-3.3986E-05	466.27639770117247	42.667	1.5184	42.758	41.981	43.499	0.091362					109	54	3	0	0	0	0.05341	2	9297	9251;9297		51.63	7.8574	1	1821700			54929	8413	31494	31495	67189;67190	67190					0.07054938211717854
VSSLWSFCR	9	Unmodified	_VSSLWSFCR_					0	0	0		ENST00000464350.6_1_3:66406477-66420969:+|nuORF;ENST00000483224.5_1_3:66354939-66420969:+|nuORF	ENST00000464350.6_1_3:66406477-66420969:+|nuORF	ENST00000464350.6_1_3:66406477-66420969:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.29248046875	2	542.765852	1083.51715	0.56986	0.0003093	-0.47966	-0.00026034	0.0902	4.8958E-05	542.7654531632035	71.638	0.40464	71.694	71.628	72.033	0.056572					21	14	2	0	0	0	0.25202	1	18310	18310		10.824	2.2306	1	114350			54930	10782	31495	31496	67191	67191					-0.021267700886483
VSSLWSFCR	9	Unmodified	_VSSLWSFCR_					0	0	0		ENST00000464350.6_1_3:66406477-66420969:+|nuORF;ENST00000483224.5_1_3:66354939-66420969:+|nuORF	ENST00000464350.6_1_3:66406477-66420969:+|nuORF	ENST00000464350.6_1_3:66406477-66420969:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	542.765852	1083.51715	0.66677	0.0003619	-0.38743	-0.00021028	0.27934	0.00015162	542.7656053622345	71.811	0.13355	71.784	71.685	71.819	-0.027275	0.044789	1.5964E-05	NaN	10.824	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62810			54931	10782	31495	31496							-0.021267700886483
VSSNHLPLA	9	Unmodified	_VSSNHLPLA_					0	0	0			REV__nc|ENSG00000118454|Q8N6S4-3|ANKRD13C	REV__nc|ENSG00000118454|Q8N6S4-3|ANKRD13C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.2585754394531	2	469.258717	936.50288	0.24553	0.00011522	-0.44843	-0.00021043	-0.20289	-9.521E-05	469.2584650885158	44.216	0.61186	44.285	44.039	44.651	0.068569					35	22	2	0	0	0	0.25314	1	9811	9811		15.847	1.9411	1	478070	+		54932	15011	31496	31497	67192	67192					0.032089007547028814
VSSNHLPLA	9	Unmodified	_VSSNHLPLA_					0	0	0			REV__nc|ENSG00000118454|Q8N6S4-3|ANKRD13C	REV__nc|ENSG00000118454|Q8N6S4-3|ANKRD13C	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	469.258717	936.50288	0.24553	0.00011522	-0.44843	-0.00021043	-0.20289	-9.521E-05	469.2584650885158	44.216	0.61186	44.285	44.039	44.651	0.068569	-0.029478	-0.00012191	NaN	15.847	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478070	+		54933	15011	31496	31497							0.032089007547028814
VSSPFSLDL	9	Unmodified	_VSSPFSLDL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.29693603515625	2	482.752933	963.491313	0.62007	0.00029934	0.97909	0.00047266	1.5992	0.000772	482.7522479888766	77.883	1.0924	77.883	77.394	78.486	0					61	40	2	0	0	0	0.1939	1	20162	20162		30.637	2.1497	1	226820			54934	8441	31497	31498	67193	67193					0.008106589407248066
VSSPFSLDL	9	Unmodified	_VSSPFSLDL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.296630859375	2	482.752933	963.491313	0.59886	0.0002891	0.95657	0.00046179	1.5554	0.00075089	482.75210361439605	77.789	1.0737	77.845	77.314	78.387	0.055412					51	38	2	0	0	0	0.12743	1	20088	20088		46.021	6.0636	1	168080			54935	8441	31497	31498	67194	67194					0.008106589407248066
VSSPKLAPK	9	Unmodified	_VSSPKLAPK_					0	0	0		nc|ENSG00000214558|P0DQW0|ZC3H11C;ENSG00000215817|ENST00000651890|ZC3H11B;ENSG00000058673|ENST00000367210|ZC3H11A;ENST00000495527.5_2_1:203819629-203821524:+|nuORF	nc|ENSG00000214558|P0DQW0|ZC3H11C	nc|ENSG00000214558|P0DQW0|ZC3H11C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	464.27581787109375	2	463.78711	925.559667	-0.21986	-0.00010197	0.10571	4.9025E-05	-0.11415	-5.2942E-05	463.7870910917657	19.135	0.98448	19.135	18.563	19.547	0					73	34	3	0	0	0	0.25123	1	2081	2081		12.241	3.6474	1	205260			54936	736	31498	31499	67195	67195					0.09390948311227021
VSSPKLAPK	9	Unmodified	_VSSPKLAPK_					0	0	0		nc|ENSG00000214558|P0DQW0|ZC3H11C;ENSG00000215817|ENST00000651890|ZC3H11B;ENSG00000058673|ENST00000367210|ZC3H11A;ENST00000495527.5_2_1:203819629-203821524:+|nuORF	nc|ENSG00000214558|P0DQW0|ZC3H11C	nc|ENSG00000214558|P0DQW0|ZC3H11C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.2757263183594	2	463.78711	925.559667	-0.11274	-5.2286E-05	-0.014102	-6.5402E-06	-0.12684	-5.8826E-05	463.78704599748346	19.215	0.81651	19.099	18.762	19.579	-0.11592					63	28	3	0	0	0	0.24636	1	2115	2115		16.149	3.9084	1	236930			54937	736	31498	31499	67196	67196					0.09390948311227021
VSSPKLAPK	9	Unmodified	_VSSPKLAPK_					0	0	0		nc|ENSG00000214558|P0DQW0|ZC3H11C;ENSG00000215817|ENST00000651890|ZC3H11B;ENSG00000058673|ENST00000367210|ZC3H11A;ENST00000495527.5_2_1:203819629-203821524:+|nuORF	nc|ENSG00000214558|P0DQW0|ZC3H11C	nc|ENSG00000214558|P0DQW0|ZC3H11C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.27569580078125	2	463.78711	925.559667	0.045461	2.1084E-05	-0.19169	-8.8901E-05	-0.14622	-6.7817E-05	463.786987253724	19.228	1.2153	19.173	18.573	19.788	-0.055693					73	42	3	0	0	0	0.24636	1	2124	2124		16.149	0	1	225570			54938	736	31498	31499	67197	67197					0.09390948311227021
VSSQTPHHSIF	11	Unmodified	_VSSQTPHHSIF_					0	0	0		ENST00000510676.6_2_5:71616224-71630887:+|nuORF	ENST00000510676.6_2_5:71616224-71630887:+|nuORF	ENST00000510676.6_2_5:71616224-71630887:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5264892578125	3	413.875405	1238.60439	-0.16592	-6.867E-05	4.0034	0.0016569	3.8375	0.0015882	414.210835919644	25.049	0.38415	25.017	24.796	25.181	-0.03141					26	12	3	0	0	0	0.33149	1	3926	3926		2.4348	0	1	50586			54939	11375	31499	31500	67198	67198					-0.00537272613382811
VSSRHWLNKD	10	Unmodified	_VSSRHWLNKD_					0	0	0		L1PB2_dup662|chr4:69045538-69047075:-|8.226746573817685|0.3974588987332585|4.37|541.0|6|1|sense	L1PB2_dup662|chr4:69045538-69047075:-|8.226746573817685|0.3974588987332585|4.37|541.0|6|1|sense	L1PB2_dup662|chr4:69045538-69047075:-|8.226746573817685|0.3974588987332585|4.37|541.0|6|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.5506591796875	3	414.551033	1240.63127	0.17355	7.1945E-05	-1.0367	-0.00042978	-0.86318	-0.00035783	414.5505376322386	19.277	1.2101	19.222	18.989	20.199	-0.055693					76	42	3	0	0	0	0.37568	1	2185	2185		7.9454	1.315	1	280820			54940	12496	31500	31501	67199	67199					0.020578359977889704
VSSRKGPL	8	Unmodified	_VSSRKGPL_					0	0	0			REV__ENST00000506788.5_1_4:143383874-143768576:-|nuORF	REV__ENST00000506788.5_1_4:143383874-143768576:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.24609375	2	422.255977	842.497401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.883	1	19.768	19.268	20.268	-0.11592								0	0	0	0.36169	1	2371	2371		9.3474	3.587	1		+		54941	21755	31501	31502	67200	67200					0.06985221962906962
VSSRQPLI	8	Unmodified	_VSSRQPLI_					0	0	0			REV__ENST00000493154.1_1_10:24889704-24891001:-|nuORF	REV__ENST00000493154.1_1_10:24889704-24891001:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2693786621094	2	450.269084	898.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.782	1	80.755	80.255	81.255	-0.026825								0	0	0	0.37664	1	20995	20995		2.5775	0	1		+		54942	21634	31502	31503	67201	67201					0.07029491134380805
VSSRRRRR	8	Unmodified	_VSSRRRRR_					0	0	0		ENST00000350498.7_1_7:99006166-99006442:-|nuORF	ENST00000350498.7_1_7:99006166-99006442:-|nuORF	ENST00000350498.7_1_7:99006166-99006442:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2818603515625	2	536.831572	1071.64859	0.47014	0.00025238	-2.0175	-0.0010831	-1.5474	-0.00083069	536.8304590677211	33.422	0.36182	33.422	33.202	33.564	0					19	12	2	0	0	0	0.34353	1	6442	6442		4.756	0	1	124960			54943	9574	31503	31504	67202	67202					0.11563221114124644
VSSRRRRR	8	Unmodified	_VSSRRRRR_					0	0	0		ENST00000350498.7_1_7:99006166-99006442:-|nuORF	ENST00000350498.7_1_7:99006166-99006442:-|nuORF	ENST00000350498.7_1_7:99006166-99006442:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2819213867188	2	536.831572	1071.64859	0.43092	0.00023133	-1.651	-0.00088633	-1.2201	-0.000655	536.8304227051667	33.363	0.33012	33.43	33.154	33.484	0.06636					20	11	2	0	0	0	0.34353	1	6406	6406		4.756	0	1	137810			54944	9574	31503	31504	67203	67203					0.11563221114124644
VSSSDIGRAK	10	Unmodified	_VSSSDIGRAK_					0	0	0			REV__ENST00000524549.1_1_11:9597437-9598815:+|nuORF	REV__ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2778015136719	2	510.277638	1018.54072	-0.0028916	-1.4755E-06	-0.14542	-7.4204E-05	-0.14831	-7.568E-05	510.27771322046345	13.858	0.85624	13.858	13.567	14.423	0					88	29	5	0	0	0	0.20497	1	523	523		32.037	0	1	2197800	+		54945	17325	31504	31505	67204	67204					0.0321936694950864
VSSSDIGRAK	10	Unmodified	_VSSSDIGRAK_					0	0	0			REV__ENST00000524549.1_1_11:9597437-9598815:+|nuORF	REV__ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.27783203125	2	510.277638	1018.54072	-0.10043	-5.1248E-05	-0.018729	-9.5571E-06	-0.11916	-6.0805E-05	510.2777720780724	13.947	0.8217	13.881	13.661	14.483	-0.066068					90	28	5	0	0	0	0.10215	2	552	552;710		47.594	3.822	1	2576400	+		54946	17325	31504	31505	67205;67206	67205					0.0321936694950864
VSSSLQLLI	9	Unmodified	_VSSSLQLLI_					0	0	0			REV__ENST00000511220.1_1_5:92603510-92603882:+|nuORF	REV__ENST00000511220.1_1_5:92603510-92603882:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2922668457031	2	480.292225	958.569897	0.20065	9.637E-05	0.099441	4.7761E-05	0.30009	0.00014413	480.29213729264006	59.32	0.47363	59.411	59.183	59.657	0.091301					33	16	3	0	0	0	0.20626	1	14466	14466		22.736	3.4793	1	435760	+		54947	21808	31505	31506	67207	67207					0.08895511245816579
VSSTKRHKS	9	Unmodified	_VSSTKRHKS_					0	0	0		ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant;ENSG00000166716|ENST00000560079|ZNF592	ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	ZNF592|p.G1223Ffs*3|1|0.12|ENSG00000166716|chr15:84802255-84802256|-/TTTT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.24951171875	2	515.293622	1028.57269	0.1109	5.7146E-05	-0.71983	-0.00037092	-0.60893	-0.00031378	515.2934042041677	27.148	0.33625	27.126	26.955	27.291	-0.021412					15	11	2	0	0	0	0.25622	1	4552	4552		7.2892	0	1	35310			54948	6104	31506	31507	67208	67208					0.05954779423313994
VSSTLQIK	8	Unmodified	_VSSTLQIK_					0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.8839111328125	2	438.263468	874.512382	-0.06522	-2.8583E-05	-0.38537	-0.00016889	-0.45059	-0.00019748	438.26324536683154	31.036	0.47866	31.036	30.753	31.231	0					18	16	2	0	0	0	0.34272	1	5675	5675		7.9102	0	1	45095	+		54949	14997	31507	31508	67209	67209					0.07010669040221273
VSSTPVPQR	9	Unmodified	_VSSTPVPQR_					0	0	0		ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.76885986328125	2	485.769448	969.524344	0.46952	0.00022808	-0.82643	-0.00040146	-0.35691	-0.00017338	485.7691009831979	21.218	0.73299	21.108	20.729	21.462	-0.11003					60	25	4	0	0	0	0.05341	1	2789	2789		51.63	22.548	1	540420			54950	494	31508	31509	67210	67210					0.03836285783427229
VSSTPVPQR	9	Unmodified	_VSSTPVPQR_					0	0	0		ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.76885986328125	2	485.769448	969.524344	0.405	0.00019674	-0.93738	-0.00045535	-0.53238	-0.00025861	485.76896859121246	21.194	0.76684	21.141	20.749	21.516	-0.05291					63	26	3	0	0	0	0.026579	1	2756	2756		61.602	28.816	1	518010			54951	494	31508	31509	67211	67211					0.03836285783427229
VSSTPVPQR	9	Unmodified	_VSSTPVPQR_					0	0	0		ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	ENSG00000018408|ENST00000360632|WWTR1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	485.769448	969.524344	0.35856	0.00017418	-1.2774	-0.00062055	-0.91889	-0.00044637	485.7687108255584	21.072	0.71983	21.072	20.825	21.545	0	-0.034872	-9.2423E-05	NaN	61.602	62	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	430970			54952	494	31508	31509							0.03836285783427229
VSSVVKPSDL	10	Unmodified	_VSSVVKPSDL_					0	0	0		ENST00000439326.7_1_19:12188026-12188518:+|nuORF	ENST00000439326.7_1_19:12188026-12188518:+|nuORF	ENST00000439326.7_1_19:12188026-12188518:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.3040771484375	2	515.792589	1029.57063	0.19313	9.9615E-05	1.0826	0.00055838	1.2757	0.000658	515.7931934916503	26.65	0.59288	26.611	26.316	26.909	-0.038671					31	20	3	0	0	0	0.3001	1	4434	4434		20.415	6.5085	1	145360			54953	10543	31509	31510	67212	67212					0.057023058948516336
VSSVVKPSDL	10	Unmodified	_VSSVVKPSDL_					0	0	0		ENST00000439326.7_1_19:12188026-12188518:+|nuORF	ENST00000439326.7_1_19:12188026-12188518:+|nuORF	ENST00000439326.7_1_19:12188026-12188518:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	515.792589	1029.57063	0.37661	0.00019425	0.92456	0.00047688	1.3012	0.00067114	515.7929974400788	26.669	0.70291	26.647	26.356	27.059	-0.022236	0.018716	-0.00014744	NaN	20.415	31	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202250			54954	10543	31509	31510							0.057023058948516336
VSTDYKKLKK	10	Unmodified	_VSTDYKKLKK_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF;chr12:57235609-57235749|292|950.43|0.57|10.7|-|2|None,NDUFA4L2|2	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.8878173828125	3	403.911568	1208.71287	-0.23811	-9.6176E-05	0.22724	9.1786E-05	-0.010869	-4.3902E-06	403.9115700173356	16.246	0.57447	16.246	15.947	16.521	0					29	18	2	0	0	0	0.31433	1	1270	1270		14.957	2.7296	1	55361			54955	7545	31510	31511	67213	67213					0.11686518636997789
VSTDYKKLKK	10	Unmodified	_VSTDYKKLKK_					0	0	0		ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF;chr12:57235609-57235749|292|950.43|0.57|10.7|-|2|None,NDUFA4L2|2	ENSG00000185633|ENST00000554503|NDUFA4L2	ENSG00000185633|ENST00000554503|NDUFA4L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.8879089355469	3	403.911568	1208.71287	-0.37457	-0.00015129	0.37177	0.00015016	-0.0027908	-1.1272E-06	403.91175338338513	16.366	0.51147	16.252	16.02	16.532	-0.11434					25	15	2	0	0	0	0.31701	1	1305	1305		10.899	2.1472	1	53561			54956	7545	31510	31511	67214	67214					0.11686518636997789
VSTEVRLMI	9	Oxidation (M)	_VSTEVRLM(Oxidation (M))I_		VSTEVRLM(1)I		VSTEVRLM(120)I	0	0	1		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2949829101562	2	532.294442	1062.57433	0.85963	0.00045758	1.2857	0.00068435	2.1453	0.0011419	532.294573228061	50.219	1.1213	50.264	49.645	50.766	0.044891					139	41	5	0	0	0	0.0010968	1	11622	11622		121.53	65.357	1	3887800			54957	3583	31511	31512	67215	67215		456			0.045546523970415365
VSTGAPATR	9	Unmodified	_VSTGAPATR_					0	0	0			REV__nc|ENSG00000132692|Q96GW7-2|BCAN	REV__nc|ENSG00000132692|Q96GW7-2|BCAN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8880920410156	2	430.235242	858.45593	-0.033598	-1.4455E-05	0.34568	0.00014872	0.31208	0.00013427	430.23498998870707	23.408	0.70294	23.363	23.084	23.787	-0.044867					34	24	2	0	0	0	0.25938	1	3444	3444		4.3292	0	1	34201	+		54958	13125	31512	31513	67216	67216					0.02104041203574525
VSTIAVATQE	10	Unmodified	_VSTIAVATQE_					0	0	0			REV__ENST00000593708.1_1_19:35760385-35760731:+|nuORF	REV__ENST00000593708.1_1_19:35760385-35760731:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7876892089844	2	509.774396	1017.53424	0.3503	0.00017857	0.0082133	4.1869E-06	0.35851	0.00018276	509.77439335830746	23.779	0.48719	23.74	23.506	23.993	-0.038927					26	16	2	0	0	0	0.31794	1	3492	3492		8.1555	0.8663	1	111970	+		54959	14481	31513	31514	67217	67217					0.02617428998144078
VSTKDVKV	8	Unmodified	_VSTKDVKV_					0	0	0		ENSG00000021826|ENST00000233072|CPS1;nc|ENSG00000021826|P31327-3|CPS1	ENSG00000021826|ENST00000233072|CPS1	ENSG00000021826|ENST00000233072|CPS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.26348876953125	2	438.263468	874.512382	-0.52605	-0.00023055	0.24321	0.00010659	-0.28284	-0.00012396	438.26354002897574	35.227	1.0155	35.305	35.06	36.076	0.077381					66	36	2	0	0	0	0.45307	1	7141	7141		4.756	0	1	826740			54960	512	31514	31515	67218	67218					0.07010669040232642
VSTLPPVSI	9	Unmodified	_VSTLPPVSI_					0	0	0			REV__ENST00000554424.1_1_14:92278647-92280122:-|nuORF	REV__ENST00000554424.1_1_14:92278647-92280122:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7735595703125	2	456.773668	911.532783	0.060926	2.7829E-05	-0.67984	-0.00031053	-0.61892	-0.00028271	456.7737135511081	69.994	0.67366	69.994	69.732	70.406	0					56	24	4	0	0	0	0.15219	1	17693	17693		30.637	0	1	673880	+		54961	17279	31515	31516	67219	67219					0.07347839700048553
VSTLRKDVT	9	Unmodified	_VSTLRKDVT_					0	0	0		ENST00000588320.1_1_17:40720799-40723580:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX;ENST00000585403.5_1_17:40721544-40721625:+|nuORF	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	ENST00000588320.1_1_17:40720799-40723580:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7707824707031	2	509.798206	1017.58186	-0.01766	-9.0028E-06	-0.37054	-0.0001889	-0.3882	-0.0001979	509.7980534682769	13.223	0.21764	13.223	13.118	13.336	0					12	7	2	0	0	0	0.25706	1	364	364		6.7232	0	1	49569			54962	2213	31516	31517	67220	67220					0.07377127988979737
VSTNLEGRYLS	11	Unmodified	_VSTNLEGRYLS_					0	0	0		ENST00000505193.1_1_4:73307870-73433103:-|nuORF;ENSG00000156140|ENST00000286657|ADAMTS3	ENST00000505193.1_1_4:73307870-73433103:-|nuORF	ENST00000505193.1_1_4:73307870-73433103:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5503845214844	3	413.550698	1237.63027	0.09446	3.9064E-05	-0.079351	-3.2816E-05	0.015109	6.2483E-06	413.55042086438635	23.243	0.69536	23.155	22.82	23.515	-0.087608					50	24	3	0	0	0	0.43508	1	3359	3359		3.3557	0.036083	1	137240			54963	5222	31517	31518	67221	67221					0.020955768382464157
VSTPKLQSI	9	Unmodified	_VSTPKLQSI_					0	0	0		ENST00000460448.5_1_3:167254737-167322194:-|nuORF	ENST00000460448.5_1_3:167254737-167322194:-|nuORF	ENST00000460448.5_1_3:167254737-167322194:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.9319763183594	2	486.78985	971.565146	0.3754	0.00018274	-0.32638	-0.00015888	0.04902	2.3863E-05	486.7896032271879	30.026	0.61619	30.026	29.774	30.391	0					25	21	2	0	0	0	0.25202	1	5446	5446		10.824	0	1	65420			54964	10729	31518	31519	67222	67222					0.07822627103041668
VSTPLEVW	8	Unmodified	_VSTPLEVW_					0	0	0		ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	ENSG00000031081|ENST00000264245|ARHGAP31	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2821350097656	2	465.750193	929.485833	-0.17455	-8.1297E-05	-4.2466	-0.0019779	-4.4212	-0.0020592	465.74798449875203	17.587	0.22234	17.47	17.323	17.545	-0.11739					12	7	2	0	0	0	0.34337	1	1635	1635		5.2307	0	1	35418			54965	551	31519	31520	67223	67223					0.01826980148905477
VSTPQALRSI	10	Unmodified	_VSTPQALRSI_					0	0	0			REV__ENSG00000165507|ENST00000298295|DEPP1	REV__ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.311767578125	2	536.31148	1070.60841	0.51536	0.00027639	-0.46672	-0.00025031	0.048641	2.6087E-05	536.3113291111662	31.931	0.73351	31.972	31.722	32.456	0.040991					53	25	3	0	0	0	0.37454	1	6080	6080		8.1555	0	1	760760	+		54966	17240	31520	31521	67224	67224					0.07592816880310238
VSTQELRRSRY	11	Unmodified	_VSTQELRRSRY_					0	0	0			REV__ENST00000418132.7_1_17:38296747-38323177:+|nuORF	REV__ENST00000418132.7_1_17:38296747-38323177:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2640686035156	3	465.588147	1393.74261	-0.10805	-5.0305E-05	-0.41859	-0.00019489	-0.52663	-0.00024519	465.5880493827555	18.016	0.64357	18.016	17.719	18.363	0					49	21	3	0	0	0	0.46704	1	1857	1857		2.4348	1.22	1	96608	+		54967	14588	31521	31522	67225	67225					0.06148850635076997
VSTQNLLLL	9	Unmodified	_VSTQNLLLL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2908935546875	2	500.8055	999.596446	0.28019	0.00014032	-0.83387	-0.00041761	-0.55368	-0.00027729	500.8056703097297	75.887	0.54235	75.94	75.647	76.189	0.053421					25	19	2	0	0	0	0.16283	1	19507	19507		29.082	0	1	486910			54968	1572	31522	31523	67226	67226					0.09663200137140393
VSTRQAGL	8	Unmodified	_VSTRQAGL_					0	0	0		ENST00000566844.1_1_15:72564732-72564843:-|nuORF;ENST00000569795.5_1_15:72563579-72564960:-|nuORF	ENST00000566844.1_1_15:72564732-72564843:-|nuORF	ENST00000566844.1_1_15:72564732-72564843:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.22784423828125	2	416.237784	830.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.877	1	29.889	29.389	30.389	0.012266								0	0	0	0.35014	1	5400	5400		14.582	4.3983	1				54969	11989	31523	31524	67227	67227					0.03900345066176669
VSTSHLLIL	9	Unmodified	_VSTSHLLIL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.8003845214844	2	491.800217	981.585882	0.37097	0.00018244	0.088899	4.372E-05	0.45987	0.00022616	491.80020102451533	57.691	1.5677	57.691	57.323	58.891	0					127	54	4	0	0	0	0.00033206	4	13945	13901;13945;13996;14052		131.3	73.826	1	10510000			54970	5753	31524	31525	67228;67229;67230;67231	67229					0.09435217482723601
VSTSHLLIL	9	Unmodified	_VSTSHLLIL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.8004150390625	2	491.800217	981.585882	0.3842	0.00018895	0.056004	2.7543E-05	0.44021	0.00021649	491.80019900348213	57.542	1.2626	57.627	57.318	58.581	0.085617					124	45	4	0	0	0	0.00033206	4	13904	13852;13904;13955;14005		131.3	73.826	1	10254000			54971	5753	31524	31525	67232;67233;67234;67235	67233					0.09435217482723601
VSTSHLLIL	9	Unmodified	_VSTSHLLIL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.8004150390625	2	491.800217	981.585882	0.24359	0.0001198	0.28443	0.00013988	0.52802	0.00025968	491.80029700155694	57.694	1.2414	57.677	57.364	58.605	-0.0172					120	45	4	0	0	0	0.0014051	4	13903	13903;13951;14003;14054		117.6	69.253	1	11210000			54972	5753	31524	31525	67236;67237;67238;67239	67236					0.09435217482723601
VSTSVPRSV	9	Unmodified	_VSTSVPRSV_					0	0	0		ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.2765808105469	2	466.263999	930.513445	0.13649	6.3639E-05	0.015579	7.2638E-06	0.15207	7.0903E-05	466.26409341027465	29.949	0.48328	29.949	29.58	30.064	0					20	16	2	0	0	0	0.31417	1	5377	5377		6.7232	0.51738	1	114230			54973	6207	31525	31526	67240	67240					0.04540883409151775
VSTSVPRSV	9	Unmodified	_VSTSVPRSV_					0	0	0		ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	466.263999	930.513445	0.13649	6.3639E-05	0.015579	7.2638E-06	0.15207	7.0903E-05	466.26409341027465	29.949	0.48328	29.949	29.58	30.064	0	0.0013426	-0.00024997	NaN	6.7232	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114230			54974	6207	31525	31526							0.04540883409151775
VSTSVPRSV	9	Unmodified	_VSTSVPRSV_					0	0	0		ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	ENSG00000167771|ENST00000301459|RCOR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	466.263999	930.513445	0.086841	4.0491E-05	0.88888	0.00041445	0.97572	0.00045494	466.2646210263282	29.934	0.34021	29.946	29.72	30.06	0.012266	-0.0013426	0.00056441	NaN	6.7232	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76538			54975	6207	31525	31526							0.04540883409151775
VSTTLHHAF	9	Unmodified	_VSTTLHHAF_					0	0	0		ENSG00000197446|ENST00000331105|CYP2F1	ENSG00000197446|ENST00000331105|CYP2F1	ENSG00000197446|ENST00000331105|CYP2F1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7952575683594	2	506.764166	1011.51378	0.34457	0.00017462	2.237	0.0011336	2.5816	0.0013083	506.76605480942135	70.417	0.42569	70.393	70.185	70.611	-0.024872					20	14	2	0	0	0	0.21905	1	17835	17835		16.942	0	1	146310			54976	7965	31526	31527	67241	67241					0.008483031289870269
VSVAPHRL	8	Unmodified	_VSVAPHRL_					0	0	0			REV__ENST00000405737.2_2_13:41635295-41635541:-|nuORF	REV__ENST00000405737.2_2_13:41635295-41635541:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.2359619140625	2	439.763969	877.513385	0.016915	7.4386E-06	-0.82268	-0.00036178	-0.80576	-0.00035434	439.76326385782346	28.8	0.23835	28.795	28.629	28.867	-0.0042572					11	7	2	0	0	0	0.34319	1	5035	5035		5.7604	0	1	47170	+		54977	20736	31527	31528	67242	67242					0.06972928199797934
VSVATERAL	9	Unmodified	_VSVATERAL_					0	0	0		ENSG00000069696|ENST00000176183|DRD4	ENSG00000069696|ENST00000176183|DRD4	ENSG00000069696|ENST00000176183|DRD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.76397705078125	2	473.271824	944.529095	0.11759	5.5654E-05	0.51396	0.00024324	0.63155	0.0002989	473.2721495251988	22.367	0.83394	22.266	21.944	22.777	-0.10034					73	30	4	0	0	0	0.10197	1	3082	3082		37.974	1.4678	1	290000			54978	909	31528	31529	67243	67243					0.05461169926195453
VSVCHKGTL	9	Unmodified	_VSVCHKGTL_					0	0	0			REV__ENSG00000103540|ENST00000694978|CCP110	REV__ENSG00000103540|ENST00000694978|CCP110	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.72894287109375	2	472.25512	942.495686	0.0087712	4.1422E-06	0.16711	7.8917E-05	0.17588	8.3059E-05	472.2552523056507	22.637	0.61082	22.549	22.272	22.883	-0.087608					34	21	2	0	0	0	0.25202	1	3163	3163		10.824	0	1	75584	+		54979	14379	31529	31530	67244	67244					0.02213844882646754
VSVCLYYRCL	10	Unmodified	_VSVCLYYRCL_					0	0	0		ENST00000263801.7_1_15:43802577-43802799:-|nuORF	ENST00000263801.7_1_15:43802577-43802799:-|nuORF	ENST00000263801.7_1_15:43802577-43802799:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.7532043457031	3	406.871838	1217.59369	0.022083	8.985E-06	-0.0049466	-2.0126E-06	0.017137	6.9724E-06	406.87191619778537	37.336	0.59941	37.424	37.193	37.793	0.087406					49	21	3	0	0	0	0.31942	1	7761	7761		1.7423	1.7423	1	448290			54980	9014	31530	31531	67245	67245					-0.006407145836647032
VSVEFEDELF	10	Unmodified	_VSVEFEDELF_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000037665	REV__CON__ENSEMBL:ENSBTAP00000037665	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5440368652344	3	405.192288	1212.55504	0.15527	6.2915E-05	1.3297	0.00053877	1.4849	0.00060169	405.19280527570174	36.034	0.5797	36.121	35.844	36.424	0.08625					47	20	3	0	0	0	0.31746	1	7239	7239		9.544	9.544	1	395140	+	+	54981	13246	31531	31532	67246	67246					-0.04274025412860283
VSVFVKVSL	9	Unmodified	_VSVFVKVSL_					0	0	0		ENSG00000277758|ENST00000615923|SYT15B;ENSG00000204176|ENST00000374321|SYT15;nc|ENSG00000277758|X6R8R1|SYT15B;nc|ENSG00000204176|Q9BQS2-3|SYT15;nc|ENSG00000204176|Q9BQS2-4|SYT15;nc|ENSG00000204176|Q9BQS2-2|SYT15	ENSG00000277758|ENST00000615923|SYT15B	ENSG00000277758|ENST00000615923|SYT15B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.813232421875	2	489.305136	976.595718	0.57725	0.00028245	0.44727	0.00021885	1.0245	0.0005013	489.3054411712405	50.896	0.29594	50.942	50.741	51.037	0.046577					17	10	2	0	0	0	0.20881	1	11801	11801		27.629	8.3718	1	198610			54982	8201	31532	31533	67247	67247					0.10648405488097978
VSVGRWKL	8	Unmodified	_VSVGRWKL_					0	0	0		Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|150|1|anti-sense	Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|150|1|anti-sense	Harlequin-int_dup415|chr13:22885843-22889378:+|1.674768406020891|0.2933300422967718|2.51|521.0|150|1|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.27239990234375	2	472.787444	943.560336	0.029693	1.4038E-05	-0.2376	-0.00011233	-0.20791	-9.8296E-05	472.7874860072749	22.288	0.25257	22.238	22.09	22.343	-0.049377					15	8	2	0	0	0	0.39956	1	3113	3113		19.439	0	1	48926			54983	12373	31533	31534	67248	67248					0.08629787750930973
VSVHLTTHKR	10	Unmodified	_VSVHLTTHKR_					0	0	0		ENST00000600766.1_3_19:23032061-23041232:+|nuORF;ENSG00000268696|ENST00000600766|ZNF723	ENST00000600766.1_3_19:23032061-23041232:+|nuORF	ENST00000600766.1_3_19:23032061-23041232:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3427734375	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.77	1	113.75	113.25	114.25	-0.017303								0	0	0	0.38126	1	29565	29565		1.6526	0.17072	1				54984	8687	31534	31535	67249	67249					0.09147016757128767
VSVIDDRLKEK	11	Unmodified	_VSVIDDRLKEK_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000561658.5_1_16:67486328-67515058:-|nuORF	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.88226318359375	3	434.585632	1300.73507	-0.31916	-0.0001387	-0.35024	-0.00015221	-0.6694	-0.00029091	434.58552208478727	23.221	0.47887	23.221	22.969	23.448	0					28	16	2	0	0	0	0.33236	1	3390	3390		4.4062	0	1	75560			54985	5423	31535	31536	67250	67250					0.09672698314784611
VSVKISPKG	9	Unmodified	_VSVKISPKG_					0	0	0		nc|ENSG00000182795|Q9BW04-2|SARG;ENSG00000182795|ENST00000359470|C1orf116	nc|ENSG00000182795|Q9BW04-2|SARG	nc|ENSG00000182795|Q9BW04-2|SARG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.27642822265625	2	457.78711	913.559667	-1.2321	-0.00056405	-1.1448	-0.00052409	-2.377	-0.0010881	457.7870510738884	34.998	0.4514	34.998	34.775	35.227	0					24	15	2	0	0	0	0.2451	1	7024	7024		15.847	5.0233	1	148980			54986	7319	31536	31537	67251	67251					0.09942948311231703
VSVKISPKG	9	Unmodified	_VSVKISPKG_					0	0	0		nc|ENSG00000182795|Q9BW04-2|SARG;ENSG00000182795|ENST00000359470|C1orf116	nc|ENSG00000182795|Q9BW04-2|SARG	nc|ENSG00000182795|Q9BW04-2|SARG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	457.78711	913.559667	-1.362	-0.00062348	-1.2301	-0.00056312	-2.592	-0.0011866	457.7869597232231	34.875	0.44012	34.951	34.657	35.097	0.075306	-0.005246	-4.8279E-05	NaN	15.847	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130450			54987	7319	31536	31537							0.09942948311231703
VSVKMAQEYVL	11	Unmodified	_VSVKMAQEYVL_					0	0	0			REV__nc|ENSG00000064201|Q96QS1-4|TSPAN32	REV__nc|ENSG00000064201|Q96QS1-4|TSPAN32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.5543212890625	3	422.89693	1265.66896	-0.24573	-0.00010392	-0.14936	-6.3163E-05	-0.39509	-0.00016708	422.89687953266616	22.636	0.17331	22.636	22.563	22.736	0					6	5	2	0	0	0	0.33149	1	3187	3187		2.4348	0	1	14891	+		54988	21215	31537	31538	67252	67252					0.04675166148399512
VSVLASKLK	9	Unmodified	_VSVLASKLK_					0	0	0		nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.2721862792969	2	472.810585	943.606617	-0.0065821	-3.1121E-06	0.090773	4.2918E-05	0.084191	3.9806E-05	472.810627126625	22.18	0.40141	22.18	22.045	22.446	0					18	13	2	0	0	0	0.20167	1	3096	3096		29.082	0	1	58075			54989	598	31538	31539	67253	67253					0.13255807862378788
VSVLEVYLP	9	Unmodified	_VSVLEVYLP_					0	0	0		ENST00000422823.1_1_7:64196548-64197094:-|nuORF	ENST00000422823.1_1_7:64196548-64197094:-|nuORF	ENST00000422823.1_1_7:64196548-64197094:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.29364013671875	2	509.794601	1017.57465	-0.030481	-1.5539E-05	0.15206	7.752E-05	0.12158	6.1981E-05	509.79509546956064	12.652	0.31547	12.652	12.468	12.783	0					18	10	2	0	0	0	0.25526	1	193	193		7.9102	0	1	86192			54990	10382	31539	31540	67254	67254					0.06656395388563396
VSVLYFLVS	9	Unmodified	_VSVLYFLVS_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4-7|ABCA13	REV__nc|ENSG00000179869|Q86UQ4-7|ABCA13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7588500976562	2	513.797143	1025.57973	0.18871	9.6957E-05	-0.031801	-1.6339E-05	0.15691	8.0618E-05	513.7970464152854	25.566	0.53178	25.566	25.267	25.798	0					26	17	2	0	0	0	0.25938	1	4079	4079		4.3292	0	1	89511	+		54991	23110	31540	31541	67255	67255					0.067966992511856
VSVPNAKL	8	Unmodified	_VSVPNAKL_					0	0	0		nc|ENSG00000107736|Q9H251-9|CDH23;nc|ENSG00000107736|Q9H251-7|CDH23;CDH23|p.N2695Kfs*9|1|0.17|ENSG00000107736|chr10:71805868-71805868|C/-|frameshift_variant;nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23	nc|ENSG00000107736|Q9H251-9|CDH23	nc|ENSG00000107736|Q9H251-9|CDH23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.5505676269531	2	414.252903	826.491253	0.1603	6.6405E-05	0.30412	0.00012598	0.46442	0.00019239	414.2530047205689	19.298	0.48429	19.182	18.891	19.375	-0.11592					24	16	2	0	0	0	0.34131	1	2210	2210		12.532	0	1	39607			54992	103	31541	31542	67256	67256					0.07106703731381003
VSVPRVVKF	9	Unmodified	_VSVPRVVKF_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7903442382812	2	515.824027	1029.6335	0.11445	5.9038E-05	-0.43664	-0.00022523	-0.32219	-0.00016619	515.8238060088162	41.147	0.37712	41.147	40.902	41.28	0					20	13	2	0	0	0	0.2322	1	8835	8835		20.454	3.5113	1	193340			54993	5124	31542	31543	67257	67257					0.11986916473551901
VSVPRVVKF	9	Unmodified	_VSVPRVVKF_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7899169921875	2	515.824027	1029.6335	0.24658	0.00012719	-0.62425	-0.000322	-0.37767	-0.00019481	515.8235295159686	41.051	0.2963	41.141	41.002	41.299	0.090252					16	10	2	0	0	0	0.2322	1	8828	8828		10.074	2.1638	1	217840			54994	5124	31542	31543	67258	67258					0.11986916473551901
VSVPVPEL	8	Unmodified	_VSVPVPEL_					0	0	0			REV__ENST00000578175.5_1_17:66246915-66252971:+|nuORF	REV__ENST00000578175.5_1_17:66246915-66252971:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.2472229003906	2	420.247286	838.48002	0.13305	5.5915E-05	-0.15899	-6.6815E-05	-0.025937	-1.09E-05	420.24702723615275	63.05	0.68624	63.146	62.825	63.511	0.095722					50	24	3	0	0	0	0.23581	1	15564	15564		38.151	0	1	466170	+		54995	18680	31543	31544	67259	67259					0.054318816372301626
VSVPVPLL	8	Unmodified	_VSVPVPLL_					0	0	0		ENST00000368680.3_1_1:153651402-153651519:+|nuORF	ENST00000368680.3_1_1:153651402-153651519:+|nuORF	ENST00000368680.3_1_1:153651402-153651519:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.26800537109375	2	412.268022	822.521491	-0.2881	-0.00011877	-0.7067	-0.00029135	-0.9948	-0.00041012	412.2680149102757	75.96	0.88803	75.96	75.395	76.283	0					57	31	3	0	0	0	0.33916	1	19531	19531		26.341	0	1	521330			54996	9767	31544	31545	67260	67260					0.103130623965626
VSVPVPLL	8	Unmodified	_VSVPVPLL_					0	0	0		ENST00000368680.3_1_1:153651402-153651519:+|nuORF	ENST00000368680.3_1_1:153651402-153651519:+|nuORF	ENST00000368680.3_1_1:153651402-153651519:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2679748535156	2	412.268022	822.521491	0.1613	6.65E-05	-1.0743	-0.00044289	-0.91299	-0.0003764	412.2678126025786	76.033	0.84987	76.001	75.496	76.346	-0.031487					51	30	3	0	0	0	0.33916	1	19521	19521		26.341	0	1	487390			54997	9767	31544	31545	67261	67261					0.103130623965626
VSVQRKLM	8	Unmodified	_VSVQRKLM_					0	0	0			REV__ENSG00000169508|ENST00000376414|GPR183	REV__ENSG00000169508|ENST00000376414|GPR183	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.3033447265625	2	480.786587	959.558621	-0.13436	-6.46E-05	1.0715	0.00051517	0.93715	0.00045057	480.787014268954	13.224	0.39431	13.156	13.022	13.416	-0.067496					20	13	2	0	0	0	0.34408	1	397	397		2.3027	0	1	73432	+		54998	17521	31545	31546	67262	67262					0.07722410670680802
VSVRGLWK	8	Unmodified	_VSVRGLWK_					0	0	0			REV__ENSG00000139531|ENST00000266971|SUOX	REV__ENSG00000139531|ENST00000266971|SUOX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.2721862792969	2	472.787444	943.560336	-0.0046435	-2.1954E-06	-1.1406	-0.00053925	-1.1452	-0.00054144	472.7870589169155	22.175	0.20248	22.175	22.076	22.278	0					9	6	2	0	0	0	0.35375	1	3096	3096		24.674	2.9272	1	38885	+		54999	15989	31546	31547	67263	67263					0.08629787750942342
VSVRGLWK	8	Unmodified	_VSVRGLWK_					0	0	0			REV__ENSG00000139531|ENST00000266971|SUOX	REV__ENSG00000139531|ENST00000266971|SUOX	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	472.787444	943.560336	-0.0046435	-2.1954E-06	-1.1406	-0.00053925	-1.1452	-0.00054144	472.7870589169155	22.175	0.20248	22.175	22.076	22.278	0	-0.031868	-0.00043441	NaN	24.674	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38885	+		55000	15989	31546	31547							0.08629787750942342
VSVSGLTQH	9	Unmodified	_VSVSGLTQH_					0	0	0		ENSG00000267041|ENST00000591344|ZNF850	ENSG00000267041|ENST00000591344|ZNF850	ENSG00000267041|ENST00000591344|ZNF850	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	463.7576599121094	2	464.248349	926.482145	-0.17311	-8.0365E-05	-1.5882	-0.00073733	-1.7613	-0.00081769	464.2476430672668	23.126	0.30519	23.038	22.937	23.242	-0.087608					16	10	2	0	0	0	0.24311	1	3386	3386		16.942	4.4107	1	27057			55001	8682	31547	31548	67264	67264					0.01596310375032317
VSVSPRASK	9	Unmodified	_VSVSPRASK_					0	0	0		ENSG00000111011|ENST00000331738|RSRC2;ENST00000527796.6_1_12:123005916-123011400:-|nuORF	ENSG00000111011|ENST00000331738|RSRC2	ENSG00000111011|ENST00000331738|RSRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7719421386719	2	465.771991	929.529429	-0.17646	-8.219E-05	-0.46899	-0.00021844	-0.64545	-0.00030063	465.77178428286146	16.004	0.81347	16.004	15.734	16.548	0					54	28	2	0	0	0	0.29638	1	1278	1278		9.3831	1.473	1	274340			55002	2341	31548	31549	67265	67265					0.061845896460340555
VSVSTQLLK	9	Unmodified	_VSVSTQLLK_					0	0	0			REV__nc|ENSG00000110675|Q8N336-3|ELMOD1	REV__nc|ENSG00000110675|Q8N336-3|ELMOD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2395935058594	2	487.797675	973.580796	0.068298	3.3315E-05	0.51062	0.00024908	0.57891	0.00028239	487.79792714487803	23.24	0.54813	23.24	23.021	23.569	0					26	18	2	0	0	0	0.25706	1	3463	3463		6.7232	0.51738	1	55569	+		55003	14677	31549	31550	67266	67266					0.09294913620090028
VSVVRHEF	8	Unmodified	_VSVVRHEF_					0	0	0			REV__ENST00000564731.5_1_16:46761123-46772038:-|nuORF	REV__ENST00000564731.5_1_16:46761123-46772038:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.29315185546875	2	486.766709	971.518865	0.058996	2.8717E-05	0.71917	0.00035007	0.77816	0.00037878	486.7668664389947	16.151	0.4923	16.037	15.811	16.304	-0.11434					23	16	2	0	0	0	0.34337	1	1225	1225		5.2307	0	1	43233	+		55004	16050	31550	31551	67267	67267					0.03196606991616591
VSVWELLSL	9	Unmodified	_VSVWELLSL_					0	0	0			REV__ENST00000398632.3_1_21:42774955-42775423:+|nuORF	REV__ENST00000398632.3_1_21:42774955-42775423:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3010864257812	2	523.30005	1044.58555	0.64154	0.00033572	0.69761	0.00036506	1.3392	0.00070078	523.3003679395734	87.623	1.6623	87.623	86.883	88.545	0					198	80	4	0	0	0	0.068501	2	23027	23027;23155		46.021	0	1	2504400	+		55005	20684	31551	31552	67268;67269	67268					0.0650379776286627
VSWGPHCLS	9	Unmodified	_VSWGPHCLS_					0	0	0			REV__nc|ENSG00000253771|Q5T6R2-2|TPTE2P1	REV__nc|ENSG00000253771|Q5T6R2-2|TPTE2P1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2321472167969	2	493.231645	984.448736	0.11581	5.7123E-05	1.4214	0.00070107	1.5372	0.00075819	493.2323059624097	75.956	0.48207	75.956	75.711	76.193	0					27	17	2	0	0	0	0.25066	1	19557	19557		11.64	1.4569	1	162990	+		55006	23218	31552	31553	67270	67270					-0.04411014668517055
VSWHYEPG	8	Unmodified	_VSWHYEPG_					0	0	0			REV__ENSG00000170381|ENST00000643230|SEMA3E	REV__ENSG00000170381|ENST00000643230|SEMA3E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7218017578125	2	487.721967	973.429381	0.19568	9.5436E-05	-0.57238	-0.00027916	-0.3767	-0.00018373	487.7216333624234	22.406	2.7687	22.361	20.731	23.5	-0.044867					162	98	2	0	0	0	0.45015	1	3202	3202		5.7604	0.52976	1	134790	+		55007	17578	31553	31554	67271	67271					-0.05839647687764682
VSWSSSPLSL	10	Unmodified	_VSWSSSPLSL_					0	0	0		ENST00000434837.7_1_6:37664592-37664970:-|nuORF	ENST00000434837.7_1_6:37664592-37664970:-|nuORF	ENST00000434837.7_1_6:37664592-37664970:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.7770385742188	2	531.776939	1061.53933	0.5519	0.00029349	0.51615	0.00027448	1.068	0.00056796	531.7772138608693	68.514	0.64798	68.514	68.329	68.977	0					42	23	2	0	0	0	0.022405	1	17252	17252		69.105	3.6312	1	552000			55008	10502	31554	31555	67272	67272					0.011017328607749732
VSWSSSPLSL	10	Unmodified	_VSWSSSPLSL_					0	0	0		ENST00000434837.7_1_6:37664592-37664970:-|nuORF	ENST00000434837.7_1_6:37664592-37664970:-|nuORF	ENST00000434837.7_1_6:37664592-37664970:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7779541015625	2	531.776939	1061.53933	0.313	0.00016644	0.99799	0.00053071	1.311	0.00069715	531.7774219191728	68.462	0.77322	68.534	68.271	69.044	0.071938					53	28	3	0	0	0	0.019821	2	17225	17225;17274		71.922	6.4486	1	610400			55009	10502	31554	31555	67273;67274	67273					0.011017328607749732
VSWTGVGLSL	10	Unmodified	_VSWTGVGLSL_					0	0	0			REV__ENST00000409185.5_1_2:131806791-131806905:-|nuORF	REV__ENST00000409185.5_1_2:131806791-131806905:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7696838378906	2	509.782025	1017.5495	0.36186	0.00018447	-2.8315	-0.0014434	-2.4696	-0.001259	509.7807377911308	40.2	0.69194	40.2	39.942	40.634	0					56	24	3	0	0	0	0.31867	1	8643	8643		18.146	2.8979	1	594810	+		55010	20755	31555	31556	67275	67275					0.04142340586008686
VSWVKGPLS	9	Unmodified	_VSWVKGPLS_					0	0	0		ENST00000589111.5_1_19:39359746-39361880:-|nuORF;nc|ENSG00000187994|Q6ZS11-2|RINL;ENSG00000187994|ENST00000591812|RINL	ENST00000589111.5_1_19:39359746-39361880:-|nuORF	ENST00000589111.5_1_19:39359746-39361880:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.3014831542969	2	486.779285	971.544017	0.43777	0.0002131	-0.023476	-1.1428E-05	0.4143	0.00020167	486.77927520732516	59.535	0.84843	59.524	58.834	59.683	-0.011486					37	29	2	0	0	0	0.22061	1	14423	14423		24.021	9.1823	1	174890			55011	7722	31556	31557	67276	67276					0.057106617941940385
VSWVKGPLS	9	Unmodified	_VSWVKGPLS_					0	0	0		ENST00000589111.5_1_19:39359746-39361880:-|nuORF;nc|ENSG00000187994|Q6ZS11-2|RINL;ENSG00000187994|ENST00000591812|RINL	ENST00000589111.5_1_19:39359746-39361880:-|nuORF	ENST00000589111.5_1_19:39359746-39361880:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	486.779285	971.544017	0.23316	0.0001135	-0.11456	-5.5764E-05	0.1186	5.7733E-05	486.7791714766946	59.252	0.75499	59.343	58.928	59.683	0.091305	-0.10007	3.5447E-05	NaN	36.127	37	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163660			55012	7722	31556	31557							0.057106617941940385
VSWVVIVLT	9	Unmodified	_VSWVVIVLT_					0	0	0			REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158	REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2986145019531	2	508.312961	1014.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.683	1	12.615	12.115	13.115	-0.067496								0	0	0	0.24715	1	199	199		7.2892	2.96	1		+		55013	19214	31557	31558	67277	67277					0.10464692005132292
VSYCSIPSGGD	11	Unmodified	_VSYCSIPSGGD_					0	0	0			REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7937622070312	2	542.734414	1083.45428	0.20195	0.00010961	4.1832	0.0022704	4.3851	0.00238	542.7371157907185	14.218	0.1626	14.113	14.023	14.185	-0.10466					8	5	2	0	0	0	0.33238	1	659	659		3.2813	0.70383	1	46736	+		55014	14323	31558	31559	67278	67278					-0.08411380667348567
VSYIDDHVRRK	11	Unmodified	_VSYIDDHVRRK_					0	0	0		nc|ENSG00000176463|Q9UIG8-3|SLCO3A1;ENST00000553653.5_1_15:92397138-92694297:+|nuORF;nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;ENSG00000176463|ENST00000318445|SLCO3A1	nc|ENSG00000176463|Q9UIG8-3|SLCO3A1	nc|ENSG00000176463|Q9UIG8-3|SLCO3A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.7325134277344	3	463.252875	1386.7368	0.073697	3.414E-05	-1.6365	-0.00075811	-1.5628	-0.00072397	463.25228594872266	16.155	0.4072	16.093	15.975	16.382	-0.062532					31	13	3	0	0	0	0.33296	1	1290	1290		2.6312	1.5215	1	87945			55015	6930	31559	31560	67279	67279					0.05889752123380276
VSYILVSF	8	Unmodified	_VSYILVSF_					0	0	0			REV__ENSG00000170745|ENST00000304101|KCNS3	REV__ENSG00000170745|ENST00000304101|KCNS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.74603271484375	2	464.262936	926.51132	0.054289	2.5204E-05	0.93204	0.00043271	0.98632	0.00045791	464.2632273446577	29.15	0.49477	29.164	28.96	29.454	0.013475					23	17	2	0	0	0	0.34046	1	5188	5188		9.3474	0	1	106420	+		55016	17595	31560	31561	67280	67280					0.04512454671339583
VSYPAPPQ	8	Unmodified	_VSYPAPPQ_					0	0	0		ENSG00000082458|ENST00000374360|DLG3	ENSG00000082458|ENST00000374360|DLG3	ENSG00000082458|ENST00000374360|DLG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.2383117675781	2	429.721436	857.428318	0.10896	4.6823E-05	0.15627	6.7154E-05	0.26523	0.00011398	429.72132304410076	37.782	0.73639	37.782	37.532	38.269	0					50	25	3	0	0	0	0.3366	1	7908	7908		7.9102	1.187	1	448830			55017	1202	31561	31562	67281	67281					-0.006098620566717727
VSYPARTRKVI	11	Unmodified	_VSYPARTRKVI_					0	0	0		ENSG00000180269|ENST00000570682|GPR139	ENSG00000180269|ENST00000570682|GPR139	ENSG00000180269|ENST00000570682|GPR139	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.9605407714844	3	430.594461	1288.76155	0.017231	7.4196E-06	-0.29142	-0.00012548	-0.27419	-0.00011806	430.5943867323693	36.462	0.25709	36.462	36.416	36.673	0					11	8	2	0	0	0	0.33263	1	7467	7467		2.084	0.49169	1	79984			55018	7176	31562	31563	67282	67282					0.1287243199678869
VSYPARTRKVI	11	Unmodified	_VSYPARTRKVI_					0	0	0		ENSG00000180269|ENST00000570682|GPR139	ENSG00000180269|ENST00000570682|GPR139	ENSG00000180269|ENST00000570682|GPR139	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	430.594461	1288.76155	0.19553	8.4195E-05	0.41379	0.00017818	0.60933	0.00026237	430.5944888982034	36.123	0.18576	36.209	36.059	36.244	0.08625	-0.12626	0.00027468	NaN	2.084	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130960			55019	7176	31562	31563							0.1287243199678869
VSYRLEQFKAI	11	Unmodified	_VSYRLEQFKAI_					0	0	0			REV__ENST00000513286.1_1_4:54441909-54442551:+|nuORF	REV__ENST00000513286.1_1_4:54441909-54442551:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.60015869140625	3	451.922355	1352.74524	0.18411	8.3202E-05	-0.094486	-4.27E-05	0.089621	4.0502E-05	451.9222389166293	57.126	0.44254	57.107	56.865	57.308	-0.019077					28	15	3	0	0	0	0.3322	1	13694	13694		2.6312	0.19645	1	265560	+		55020	21822	31563	31564	67283	67283					0.0829730604004908
VSYRTVTVLEW	11	Unmodified	_VSYRTVTVLEW_					0	0	0		nc|ENSG00000160963|Q96A83-2|COL26A1;ENSG00000160963|ENST00000313669|COL26A1	nc|ENSG00000160963|Q96A83-2|COL26A1	nc|ENSG00000160963|Q96A83-2|COL26A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.61865234375	3	451.578477	1351.7136	0.51126	0.00023087	0.21551	9.7321E-05	0.72677	0.00032819	451.57914600148536	34.093	0.086906	34.093	34.048	34.135	0					4	2	2	0	0	0	0.33236	1	6682	6682		2.4348	0	1	49590			55021	5502	31564	31565	67284	67284					0.0518131328610707
VSYSHIQSK	9	Unmodified	_VSYSHIQSK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7747802734375	2	524.774731	1047.53491	0.4504	0.00023636	0.59847	0.00031406	1.0489	0.00055042	524.7748869655693	16.737	1.0506	16.737	16.548	17.598	0					107	36	4	0	0	0	0.00010651	2	1437	1437;1481		139.78	60.186	1	753300			55022	638	31565	31566	67285;67286	67285					0.013042684378433478
VSYSHIQSK	9	Unmodified	_VSYSHIQSK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7748413085938	2	524.774731	1047.53491	0.26738	0.00014032	0.47954	0.00025165	0.74692	0.00039196	524.7749775935457	16.877	1.0746	16.763	16.532	17.606	-0.11434					83	38	4	0	0	0	0.00010651	3	1479	1432;1479;1524		139.78	60.186	1	669800			55023	638	31565	31566	67287;67288;67289	67288					0.013042684378433478
VSYSHIQSK	9	Unmodified	_VSYSHIQSK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7749633789062	2	524.774731	1047.53491	0.53148	0.0002789	0.5117	0.00026853	1.0432	0.00054743	524.7748640030104	16.777	1.1526	16.714	16.495	17.647	-0.062532					103	40	4	0	0	0	0.00010651	2	1447	1401;1447		139.78	60.186	1	662380			55024	638	31565	31566	67290;67291	67291					0.013042684378433478
VTAAHCMHSF	10	Unmodified	_VTAAHCMHSF_					0	0	0		ENSG00000166682|ENST00000299882|TMPRSS5	ENSG00000166682|ENST00000299882|TMPRSS5	ENSG00000166682|ENST00000299882|TMPRSS5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8272705078125	2	552.241686	1102.46882	0.24924	0.00013764	-1.4198	-0.00078405	-1.1705	-0.00064641	552.2407240843904	23.412	0.92136	23.325	22.82	23.741	-0.08761					59	32	2	0	0	0	0.32033	1	3311	3311		3.5965	1.019	1	68687			55025	6102	31566	31567	67292	67292					-0.07831587000191575
VTACLVWK	8	Unmodified	_VTACLVWK_					0	0	0		ENSG00000104856|ENST00000221452|RELB;RELB|p.C203Hfs*30|1|0.15|ENSG00000104856|chr19:45022154-45022155|-/CACTT|frameshift_variant	ENSG00000104856|ENST00000221452|RELB	ENSG00000104856|ENST00000221452|RELB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.6024169921875	2	460.257131	918.499709	-0.11079	-5.099E-05	-0.94507	-0.00043497	-1.0559	-0.00048596	460.2567630890108	18.542	0.37375	18.542	18.391	18.765	0					18	12	2	0	0	0	0.34337	1	1935	1935		5.2307	5.2307	1	33303			55026	1925	31567	31568	67293	67293					0.03719934376340461
VTAERTRQPR	10	Unmodified	_VTAERTRQPR_					0	0	0		ENST00000515100.1_1_4:100813187-100815529:-|nuORF;ENST00000499666.6_1_4:100815147-100815529:-|nuORF	ENST00000515100.1_1_4:100813187-100815529:-|nuORF	ENST00000515100.1_1_4:100813187-100815529:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.5526428222656	3	405.230182	1212.66872	-0.1733	-7.0226E-05	2.9617	0.0012002	2.7884	0.00113	405.5664533116125	22.962	0.37745	22.917	22.76	23.137	-0.044867					28	13	3	0	0	0	0.38515	1	3281	3281		3.3196	0.88486	1	54259			55027	11262	31568	31569	67294	67294					0.07088927263384903
VTAEVVLAH	9	Unmodified	_VTAEVVLAH_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.76885986328125	2	469.768917	937.523281	-0.32506	-0.00015271	0.67893	0.00031894	0.35386	0.00016623	469.76902700639744	39.004	0.58211	39.004	38.765	39.348	0					38	20	4	0	0	0	4.6532E-11	2	8217	8166;8217		188.08	106.21	1	785010			55028	5753	31569	31570	67295;67296	67296					0.0520207141452147
VTAEVVLAH	9	Unmodified	_VTAEVVLAH_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7687072753906	2	469.768917	937.523281	0.014716	6.9133E-06	-0.024635	-1.1573E-05	-0.0099184	-4.6594E-06	469.7688566629262	38.945	0.49685	39.037	38.81	39.307	0.092674					32	17	2	0	0	0	4.6532E-11	2	8152	8152;8198		188.08	106.21	1	923140			55029	5753	31569	31570	67297;67298	67297					0.0520207141452147
VTAEVVLAH	9	Unmodified	_VTAEVVLAH_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7688293457031	2	469.768917	937.523281	0.39193	0.00018412	-0.47892	-0.00022498	-0.086993	-4.0867E-05	469.76868070999564	38.907	0.52695	39.007	38.735	39.262	0.099407					32	18	2	0	0	0	4.6532E-11	2	8126	8126;8177		188.08	106.21	1	961510			55030	5753	31569	31570	67299;67300	67299					0.0520207141452147
VTAKLKNSV	9	Unmodified	_VTAKLKNSV_					0	0	0			REV__ENST00000260356.5_1_15:39889145-39889202:+|nuORF	REV__ENST00000260356.5_1_15:39889145-39889202:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7639465332031	2	480.297842	958.581131	0.060584	2.9099E-05	-0.74301	-0.00035686	-0.68242	-0.00032777	480.29719608363416	18.973	0.36194	18.856	18.614	18.975	-0.11739					19	12	2	0	0	0	0.25706	1	2095	2095		3.5965	0	1	34441	+		55031	19579	31570	31571	67301	67301					0.10018333339951369
VTAKPHMTL	9	Unmodified	_VTAKPHMTL_					0	0	0			REV__ENST00000379277.6_1_20:5081360-5081546:-|nuORF	REV__ENST00000379277.6_1_20:5081360-5081546:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.28973388671875	2	499.278595	996.542637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.686	1	47.729	47.229	48.229	0.04332								0	0	0	0.22065	1	10838	10838		15.847	1.0089	1		+		55032	20530	31571	31572	67302	67302					0.044227044337844745
VTALGFVLYK	10	Unmodified	_VTALGFVLYK_					0	0	0		nc|ENSG00000189221|P21397-2|MAOA;ENSG00000189221|ENST00000338702|MAOA	nc|ENSG00000189221|P21397-2|MAOA	nc|ENSG00000189221|P21397-2|MAOA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.293212890625	2	555.831517	1109.64848	0.34252	0.00019038	-0.10931	-6.0758E-05	0.23321	0.00012963	555.831584861586	65.534	0.55264	65.534	65.268	65.821	0					46	19	3	0	0	0	0.099352	1	16337	16337		74.2	22.57	1	445380			55033	7808	31572	31573	67303	67303					0.09804363550892958
VTALGFVLYK	10	Unmodified	_VTALGFVLYK_					0	0	0		nc|ENSG00000189221|P21397-2|MAOA;ENSG00000189221|ENST00000338702|MAOA	nc|ENSG00000189221|P21397-2|MAOA	nc|ENSG00000189221|P21397-2|MAOA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2929077148438	2	555.831517	1109.64848	-0.036809	-2.0459E-05	0.20886	0.00011609	0.17205	9.5629E-05	556.3330045100168	65.374	0.53964	65.462	65.216	65.756	0.088882					35	19	2	0	0	0	0.21213	1	16286	16286		47.594	14.809	1	421320			55034	7808	31572	31573	67304	67304					0.09804363550892958
VTALGFVLYK	10	Unmodified	_VTALGFVLYK_					0	0	0		nc|ENSG00000189221|P21397-2|MAOA;ENSG00000189221|ENST00000338702|MAOA	nc|ENSG00000189221|P21397-2|MAOA	nc|ENSG00000189221|P21397-2|MAOA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.29296875	2	555.831517	1109.64848	0.26482	0.0001472	-0.11524	-6.4054E-05	0.14958	8.3141E-05	555.8314852683972	65.473	0.65961	65.461	65.201	65.861	-0.011337					45	23	3	0	0	0	0.15532	1	16317	16317		61.602	15.902	1	422990			55035	7808	31572	31573	67305	67305					0.09804363550892958
VTALKQPQL	9	Unmodified	_VTALKQPQL_					0	0	0			REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7896728515625	2	499.305667	996.596781	0.47761	0.00023847	-0.28629	-0.00014294	0.19132	9.5529E-05	499.30543761862964	65.669	0.59502	65.758	65.46	66.055	0.088882					26	21	2	0	0	0	0.25066	1	16338	16338		11.64	0	1	123430	+		55036	13683	31573	31574	67306	67306					0.09834619856997051
VTALRRDRDD	10	Unmodified	_VTALRRDRDD_					0	0	0			REV__SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	REV__SMG1|p.E3487Tfs*32|1|0.04|ENSG00000157106|chr16:18815495-18815496|-/GTAAATAAGCCATTTTATTTTGTATTTCAGT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.57623291015625	3	406.217942	1215.632	-0.43523	-0.0001768	2.574	0.0010456	2.1387	0.0008688	406.2186251187995	13.457	0.22713	13.389	13.215	13.443	-0.067495					11	7	2	0	0	0	0.31889	1	423	423		3.3196	0	1	14598	+		55037	16772	31574	31575	67307	67307					0.032806306468501134
VTAPAFALLL	10	Unmodified	_VTAPAFALLL_					0	0	0		nc|ENSG00000179456|Q99592|ZBTB18;ENSG00000179456|ENST00000358704|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.7824401855469	2	508.312961	1014.61137	0.44951	0.00022849	2.7886	0.0014175	3.2381	0.001646	508.31407680702085	54.262	0.86774	54.246	53.787	54.655	-0.015919					58	30	3	0	0	0	0.30079	1	12727	12727		10.074	0	1	272670			55038	7126	31575	31576	67308	67308					0.10464692005132292
VTAPPARNR	9	Unmodified	_VTAPPARNR_					0	0	0		ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2828674316406	2	491.283057	980.551562	0.016245	7.9808E-06	-0.20165	-9.9068E-05	-0.18541	-9.1087E-05	491.2829541845125	13.481	1.3404	13.481	13.282	14.623	0					125	46	4	0	0	0	0.0042343	1	419	419		92.491	40.223	1	1501000			55039	5665	31576	31577	67309	67309					0.06050814114462355
VTAPPARNR	9	Unmodified	_VTAPPARNR_					0	0	0		ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.2831115722656	2	491.283057	980.551562	-0.016825	-8.2659E-06	-0.062806	-3.0855E-05	-0.079631	-3.9121E-05	491.2829934079682	13.562	1.4114	13.462	13.217	14.629	-0.099291					113	49	4	0	0	0	0.010453	2	487	439;487		78.728	28.908	1	1357200			55040	5665	31576	31577	67310;67311	67311					0.06050814114462355
VTAPPARNR	9	Unmodified	_VTAPPARNR_					0	0	0		ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	ENSG00000163320|ENST00000482016|CGGBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2829895019531	2	491.283057	980.551562	-0.038215	-1.8774E-05	-0.053262	-2.6167E-05	-0.091477	-4.4941E-05	491.28300094033864	13.563	1.395	13.496	13.302	14.697	-0.067495					130	49	4	0	0	0	0.0042343	2	444	444;491		92.491	44.743	1	1313000			55041	5665	31576	31577	67312;67313	67312					0.06050814114462355
VTARKIRK	8	Unmodified	_VTARKIRK_					0	0	0		ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	ENSG00000170775|ENST00000303921|GPR37	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.3052062988281	2	486.327268	970.639983	0.31583	0.0001536	0.80191	0.00038999	1.1177	0.00054359	486.32754166296246	66.303	0.23859	66.289	66.167	66.406	-0.013588					12	8	2	0	0	0	0.34167	1	16571	16571		7.2892	0	1	94621			55042	6476	31577	31578	67314	67314					0.15348854424951242
VTARPRHF	8	Unmodified	_VTARPRHF_					0	0	0			REV__ENSG00000182220|ENST00000636580|ATP6AP2;REV__nc|ENSG00000182220|O75787-2|ATP6AP2	REV__ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8010559082031	2	492.280318	982.546083	0.1217	5.9912E-05	2.4625	0.0012122	2.5842	0.0012721	492.28148569084925	29.699	0.4341	29.712	29.39	29.824	0.013474					18	14	2	0	0	0	0.34185	1	5259	5259		10.183	2.2732	1	45446	+		55043	18184;23118	31578	31579	67315	67315					0.054111353226630854
VTARPRHF	8	Unmodified	_VTARPRHF_					0	0	0			REV__ENSG00000182220|ENST00000636580|ATP6AP2;REV__nc|ENSG00000182220|O75787-2|ATP6AP2	REV__ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	492.280318	982.546083	0.53613	0.00026393	3.2677	0.0016086	3.8039	0.0018726	492.2816249014203	29.607	0.19732	29.607	29.521	29.718	0	-0.052637	0.00046477	NaN	10.183	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43974	+		55044	18184;23118	31578	31579							0.054111353226630854
VTARRWMRR	9	Unmodified	_VTARRWMRR_					0	0	0			REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.57855224609375	3	411.236614	1230.68801	0.21755	8.9465E-05	2.8562	0.0011746	3.0738	0.0012641	411.23772985474596	29.985	0.50876	29.997	29.774	30.283	0.012266					25	17	2	0	0	0	0.25066	1	5372	5372		7.609	1.4171	1	161380	+		55045	15171	31579	31580	67316	67316					0.0818960507333486
VTARRWMRR	9	Unmodified	_VTARRWMRR_					0	0	0			REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	411.236614	1230.68801	0.07521	3.0929E-05	3.748	0.0015413	3.8232	0.0015723	411.23810252462164	29.996	0.36618	29.996	29.774	30.141	0	0.016297	0.00046338	NaN	7.609	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134850	+		55046	15171	31579	31580							0.0818960507333486
VTASDGTRSHT	11	Unmodified	_VTASDGTRSHT_					0	0	0		nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;nc|ENSG00000075275|Q9NYQ6-2|CELSR1;CELSR1|p.N1011Tfs*72|1|0.23|ENSG00000075275|chr22:46534139-46534139|T/-|frameshift_variant	nc|ENSG00000075275|Q9NYQ6|CELSR1	nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.8064575195312	2	566.273084	1130.53161	0.12247	6.935E-05	-3.3128	-0.001876	-3.1904	-0.0018066	566.2708761193122	21.994	0.42991	21.945	21.804	22.234	-0.049377					22	15	2	0	0	0	0.33251	1	3010	3010		3.5871	0.85186	1	64754			55047	1042	31580	31581	67317	67317					-0.02843026406799254
VTASDLRQT	9	Unmodified	_VTASDLRQT_					0	0	0			REV__ENST00000531657.1_1_11:70218293-70228249:+|nuORF	REV__ENST00000531657.1_1_11:70218293-70228249:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2870178222656	2	495.764363	989.514173	0.39182	0.00019425	0.82614	0.00040957	1.218	0.00060382	495.7644525192739	16.836	0.29725	16.773	16.646	16.943	-0.062534					13	10	2	0	0	0	0.26068	1	1473	1473		3.2813	0	1	39358	+		55048	15526	31581	31582	67318	67318					0.018996780582028805
VTASQYLF	8	Unmodified	_VTASQYLF_					0	0	0			REV__ENST00000455372.2_1_19:2736700-2736757:-|nuORF	REV__ENST00000455372.2_1_19:2736700-2736757:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2869567871094	2	464.742368	927.470183	0.063023	2.9289E-05	-0.0016012	-7.4416E-07	0.061422	2.8545E-05	464.74212097617635	67.417	0.18683	67.4	67.292	67.478	-0.016296					7	5	2	0	0	0	0.33995	1	16924	16924		15.768	1.1865	1	58759	+		55049	21159	31582	31583	67319	67319					0.00354693631857117
VTAVRKSSGL	10	Unmodified	_VTAVRKSSGL_					0	0	0		ENST00000355947.6_1_7:99516993-99517128:-|nuORF	ENST00000355947.6_1_7:99516993-99517128:-|nuORF	ENST00000355947.6_1_7:99516993-99517128:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.305908203125	2	509.306198	1016.59784	0.40636	0.00020696	-1.144	-0.00058262	-0.73759	-0.00037566	509.3056668015656	82.86	1.3228	82.933	82.546	83.869	0.073097					117	51	3	0	0	0	0.37133	1	21673	21673		8.7454	8.7454	1	804200			55050	9614	31583	31584	67320	67320					0.09020834225918861
VTCRDLVEYF	10	Unmodified	_VTCRDLVEYF_					0	0	0		nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2	nc|ENSG00000119787|Q8NHH9-5|ATL2	nc|ENSG00000119787|Q8NHH9-5|ATL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8026733398438	2	622.802631	1243.59071	0.29403	0.00018312	0.62542	0.00038952	0.91945	0.00057264	622.8029816667113	53.697	0.47376	53.688	53.482	53.956	-0.0096054					39	17	3	0	0	0	0.39227	1	12753	12753		4.897	0.70751	1	513580			55051	2908	31584	31585	67321	67321					-0.021342664368376063
VTDAAHLLID	10	Unmodified	_VTDAAHLLID_					0	0	0		nc|ENSG00000164756|Q8IWU4-2|SLC30A8;SLC30A8|p.P367Lfs*2|1|0.4|ENSG00000164756|chr8:117172669-117172670|CC/-|frameshift_variant;ENSG00000164756|ENST00000456015|SLC30A8	nc|ENSG00000164756|Q8IWU4-2|SLC30A8	nc|ENSG00000164756|Q8IWU4-2|SLC30A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2918701171875	2	534.290214	1066.56587	0.69198	0.00036972	2.2868	0.0012218	2.9788	0.0015915	534.2910292493916	47.931	1.0779	47.974	47.455	48.533	0.04332					65	40	2	0	0	0	0.2811	1	11004	11004		22.736	7.898	1	4208900			55052	5875	31585	31586	67322	67322					0.03525421752101465
VTDAVALRV	9	Unmodified	_VTDAVALRV_					0	0	0		ENST00000532679.5_1_11:65653270-65655931:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP;ENST00000442885.2_1_11:65655295-65655958:-|nuORF;ENST00000528937.1_1_11:65654989-65655958:-|nuORF	ENST00000532679.5_1_11:65653270-65655931:-|nuORF	ENST00000532679.5_1_11:65653270-65655931:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.76824951171875	2	472.282192	942.549831	0.061748	2.9163E-05	-0.33909	-0.00016015	-0.27735	-0.00013099	472.28189359758386	43.633	0.40482	43.633	43.414	43.819	0					25	14	2	0	0	0	0.11018	1	9625	9625		53.404	22.136	1	251280			55053	6641	31586	31587	67323	67323					0.0762576030585933
VTDAVALRV	9	Unmodified	_VTDAVALRV_					0	0	0		ENST00000532679.5_1_11:65653270-65655931:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP;ENST00000442885.2_1_11:65655295-65655958:-|nuORF;ENST00000528937.1_1_11:65654989-65655958:-|nuORF	ENST00000532679.5_1_11:65653270-65655931:-|nuORF	ENST00000532679.5_1_11:65653270-65655931:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.76861572265625	2	472.282192	942.549831	0.29673	0.00014014	-0.92233	-0.0004356	-0.6256	-0.00029546	472.2816964152079	43.461	0.49711	43.539	43.319	43.816	0.077515					27	17	2	0	0	0	0.11018	1	9532	9532		53.404	22.136	1	249250			55054	6641	31586	31587	67324	67324					0.0762576030585933
VTDAVALRV	9	Unmodified	_VTDAVALRV_					0	0	0		ENST00000532679.5_1_11:65653270-65655931:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP;ENST00000442885.2_1_11:65655295-65655958:-|nuORF;ENST00000528937.1_1_11:65654989-65655958:-|nuORF	ENST00000532679.5_1_11:65653270-65655931:-|nuORF	ENST00000532679.5_1_11:65653270-65655931:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.76824951171875	2	472.282192	942.549831	0.31929	0.00015079	-0.30597	-0.0001445	0.013321	6.2911E-06	472.28189511752225	43.443	0.35383	43.527	43.356	43.71	0.083996					20	12	2	0	0	0	0.052436	1	9532	9532		74.2	32.36	1	224810			55055	6641	31586	31587	67325	67325					0.0762576030585933
VTDCMACKYIL	11	Unmodified	_VTDCMACKYIL_					0	0	0			REV__ENSG00000143373|ENST00000336715|ZNF687	REV__ENSG00000143373|ENST00000336715|ZNF687	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.906494140625	3	420.532605	1258.57599	-0.012352	-5.1943E-06	-1.1559	-0.00048609	-1.1683	-0.00049129	420.53206710817426	30.544	0.36208	30.544	30.448	30.81	0					19	12	2	0	0	0	0.3322	1	5668	5668		4.7159	1.1289	1	94202	+		55056	16168	31587	31588	67326	67326					-0.04295797900817888
VTDCMACKYIL	11	Unmodified	_VTDCMACKYIL_					0	0	0			REV__ENSG00000143373|ENST00000336715|ZNF687	REV__ENSG00000143373|ENST00000336715|ZNF687	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	420.532605	1258.57599	0.073586	3.0945E-05	-0.49002	-0.00020607	-0.41643	-0.00017512	420.5322284743987	30.615	0.33952	30.643	30.439	30.778	0.027948	0.049443	0.0003481	NaN	4.7159	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124550	+		55057	16168	31587	31588							-0.04295797900817888
VTDDIPVFL	9	Unmodified	_VTDDIPVFL_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.776611328125	2	509.776408	1017.53826	0.38415	0.00019583	3.2732	0.0016686	3.6573	0.0018644	509.77636084527217	90.089	0.63989	90.089	89.746	90.386	0					79	53	2	0	0	0	0.28674	1	23902	23902		10.824	2.2306	1	170960			55058	2033	31588	31589	67327	67327					0.030195184918625273
VTDDIPVFL	9	Unmodified	_VTDDIPVFL_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.77703857421875	2	509.776408	1017.53826	0.32921	0.00016783	3.2321	0.0016476	3.5613	0.0018155	509.7764032000087	89.98	1.2067	90.071	89.587	90.793	0.090675					136	95	2	0	0	0	0.12846	3	23823	23823;23870;23874		34.102	15.967	1	239470			55059	2033	31588	31589	67328;67329;67330	67328					0.030195184918625273
VTDGKRIY	8	Unmodified	_VTDGKRIY_					0	0	0		MER83C_dup5|chr1:206067539-206067903:+|1.6359491688452297|0.1786861324868675|3.19|522.0|17|3|anti-sense	MER83C_dup5|chr1:206067539-206067903:+|1.6359491688452297|0.1786861324868675|3.19|522.0|17|3|anti-sense	MER83C_dup5|chr1:206067539-206067903:+|1.6359491688452297|0.1786861324868675|3.19|522.0|17|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.26641845703125	2	476.266542	950.51853	0.032974	1.5704E-05	0.025512	1.2151E-05	0.058486	2.7855E-05	476.26636960660267	18.123	0.58008	18.123	17.898	18.479	0					45	19	3	0	0	0	0.43043	1	1881	1881		12.532	0	1	168050			55060	12539	31589	31590	67331	67331					0.041291872717465594
VTDGPGNYK	9	Unmodified	_VTDGPGNYK_					0	0	0		ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000088812|O75882-3|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.7326354980469	2	475.732532	949.45051	0.038275	1.8209E-05	0.45118	0.00021464	0.48946	0.00023285	475.73265194092437	18.072	0.98581	18.072	17.66	18.646	0					76	33	3	0	0	0	0.05341	2	1795	1795;1845		51.63	22.699	1	247410			55061	1330	31590	31591	67332;67333	67332					-0.02623682378907688
VTDGPGNYK	9	Unmodified	_VTDGPGNYK_					0	0	0		ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000088812|O75882-3|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7324523925781	2	475.732532	949.45051	0.064067	3.0479E-05	0.33081	0.00015738	0.39487	0.00018785	475.7326539149278	18.201	1.1358	18.084	17.726	18.862	-0.11739					78	39	3	0	0	0	0.012386	2	1901	1846;1901		75.761	41.658	1	319980			55062	1330	31590	31591	67334;67335	67335					-0.02623682378907688
VTDGPGNYK	9	Unmodified	_VTDGPGNYK_					0	0	0		ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000088812|O75882-3|ATRN	ENSG00000088812|ENST00000262919|ATRN	ENSG00000088812|ENST00000262919|ATRN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7328186035156	2	475.732532	949.45051	-0.021904	-1.042E-05	0.40471	0.00019254	0.38281	0.00018212	475.73270418075583	18.24	1.1607	18.182	17.768	18.929	-0.058174					98	41	3	0	0	0	0.016723	2	1850	1850;1901		69.105	35.002	1	299430			55063	1330	31590	31591	67336;67337	67336					-0.02623682378907688
VTDKGSFEK	9	Unmodified	_VTDKGSFEK_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7608642578125	2	505.761289	1009.50803	0.0096961	4.9039E-06	-0.50635	-0.00025609	-0.49666	-0.00025119	505.76099439434023	14.424	0.78496	14.424	14.164	14.949	0					69	27	4	0	0	0	3.9524E-05	2	725	725;781		150.62	78.697	1	1258800			55064	6097	31591	31592	67338;67339	67338					0.0036515982668561264
VTDKGSFEK	9	Unmodified	_VTDKGSFEK_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.760986328125	2	505.761289	1009.50803	0.012465	6.3041E-06	-0.44485	-0.00022499	-0.43239	-0.00021868	505.7610226893521	14.575	0.83043	14.47	14.105	14.935	-0.10466					69	25	4	0	0	0	0.000109	2	781	781;833		139.38	70.273	1	1168600			55065	6097	31591	31592	67340;67341	67340					0.0036515982668561264
VTDKGSFEK	9	Unmodified	_VTDKGSFEK_					0	0	0		ENST00000567791.1_1_16:66955609-66957656:-|nuORF;ENSG00000166592|ENST00000299759|RRAD	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	ENST00000567791.1_1_16:66955609-66957656:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.76080322265625	2	505.761289	1009.50803	-0.012618	-6.3819E-06	-0.42965	-0.0002173	-0.44226	-0.00022368	505.76100388628214	14.538	0.85985	14.472	14.152	15.012	-0.066067					80	30	4	0	0	0	1.8399E-05	2	765	765;814		154.04	82.114	1	1281300			55066	6097	31591	31592	67342;67343	67342					0.0036515982668561264
VTDLGLARY	9	Unmodified	_VTDLGLARY_					0	0	0			REV__ENST00000560148.5_2_15:74501815-74510888:+|nuORF	REV__ENST00000560148.5_2_15:74501815-74510888:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2633361816406	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.495	1	29.507	29.007	30.007	0.012266								0	0	0	0.23091	1	5285	5285		12.532	0.89125	1		+		55067	22294	31592	31593	67344	67344					0.041734564432204024
VTDLMAAL	8	Unmodified	_VTDLMAAL_					0	0	0			REV__ENSG00000115233|ENST00000409682|PSMD14	REV__ENSG00000115233|ENST00000409682|PSMD14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.1889953613281	2	417.225497	832.43644	-0.073333	-3.0596E-05	-0.014968	-6.245E-06	-0.088301	-3.6841E-05	417.2253894161403	44.137	0.24242	44.137	44.013	44.255	0					12	8	2	0	0	0	0.34218	1	9744	9744		5.2307	0	1	186140	+		55068	14867	31593	31594	67345	67345					0.013519488684323733
VTDPIQTKN	9	Unmodified	_VTDPIQTKN_					0	0	0			REV__nc|ENSG00000138079|Q07837-2|SLC3A1	REV__nc|ENSG00000138079|Q07837-2|SLC3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2754211425781	2	508.274564	1014.53457	0.3973	0.00020194	0.67782	0.00034452	1.0751	0.00054646	508.27496060356447	90.248	0.94106	90.248	89.568	90.509	0.0003891					111	78	2	0	0	0	0.2719	1	23926	23926		13.042	2.2185	1	177540	+		55069	15900	31594	31595	67346	67346					0.027888487179893673
VTDPSIPIRKK	11	Unmodified	_VTDPSIPIRKK_					0	0	0		ENSG00000102034|ENST00000308167|ELF4	ENSG00000102034|ENST00000308167|ELF4	ENSG00000102034|ENST00000308167|ELF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.5906066894531	3	418.590717	1252.75032	-0.10277	-4.302E-05	-0.10422	-4.3625E-05	-0.20699	-8.6645E-05	418.5906181301546	25.142	0.89447	25.142	24.639	25.533	0					87	30	4	0	0	0	0.049441	2	3981	3932;3981		43.477	30.621	1	623100			55070	1739	31595	31596	67347;67348	67348					0.1340560990265658
VTDPSIPIRKK	11	Unmodified	_VTDPSIPIRKK_					0	0	0		ENSG00000102034|ENST00000308167|ELF4	ENSG00000102034|ENST00000308167|ELF4	ENSG00000102034|ENST00000308167|ELF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.5906066894531	3	418.590717	1252.75032	-0.042978	-1.799E-05	-0.20723	-8.6745E-05	-0.25021	-0.00010474	418.5905972121208	25.158	0.88556	25.103	24.628	25.514	-0.055929					80	30	3	0	0	0	0.056319	2	3941	3941;3987		35.996	19.761	1	768710			55071	1739	31595	31596	67349;67350	67349					0.1340560990265658
VTDPSIPIRKK	11	Unmodified	_VTDPSIPIRKK_					0	0	0		ENSG00000102034|ENST00000308167|ELF4	ENSG00000102034|ENST00000308167|ELF4	ENSG00000102034|ENST00000308167|ELF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5905456542969	3	418.590717	1252.75032	-0.28764	-0.0001204	0.1798	7.5261E-05	-0.10784	-4.5142E-05	418.5906702751213	25.189	0.75005	25.158	24.765	25.515	-0.031408					83	25	4	0	0	0	0.056319	3	3971	3922;3971;4017		42.068	29.212	1	609600			55072	1739	31595	31596	67351;67352;67353	67352					0.1340560990265658
VTDRKTKVTSW	11	Unmodified	_VTDRKTKVTSW_					0	0	0			REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.8862609863281	3	440.91386	1319.71975	-0.2738	-0.00012072	1.0213	0.0004503	0.7475	0.00032958	440.9143240350539	13.776	0.47801	13.671	13.513	13.991	-0.10466					28	16	2	0	0	0	0.33296	1	531	531		2.6312	0	1	36370	+		55073	16827	31596	31597	67354	67354					0.0726783151762902
VTDSLHSTKCL	11	Unmodified	_VTDSLHSTKCL_					0	0	0			REV__ENST00000507452.5_1_5:76747118-76788033:-|nuORF	REV__ENST00000507452.5_1_5:76747118-76788033:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3051147460938	2	602.305538	1202.59652	0.038464	2.3167E-05	-1.6004	-0.00096391	-1.5619	-0.00094075	602.3051661526305	14.614	0.27218	14.548	14.4	14.672	-0.066067					20	9	3	0	0	0	0.47649	1	809	809		1.1933	0.39971	1	32695	+		55074	21760	31597	31598	67355	67355					0.0033283207483236765
VTDSPRILK	9	Unmodified	_VTDSPRILK_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.316650390625	2	514.808574	1027.60259	0.29228	0.00015047	-0.035616	-1.8335E-05	0.25667	0.00013213	514.8082845197557	24.655	0.47756	24.655	24.395	24.872	0					25	15	2	0	0	0	0.2524	1	3812	3812		11.495	5.7629	1	141680			55075	4431	31598	31599	67356	67356					0.0898971836866167
VTDSPRILK	9	Unmodified	_VTDSPRILK_					0	0	0		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	514.808574	1027.60259	0.19013	9.7882E-05	0.21877	0.00011263	0.40891	0.00021051	514.8084363359184	24.73	0.43196	24.674	24.43	24.862	-0.055931	0.0096621	0.00010922	NaN	23.79	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167950			55076	4431	31598	31599							0.0898971836866167
VTDTQILHDSR	11	Unmodified	_VTDTQILHDSR_					0	0	0			REV__ENSG00000123595|ENST00000464506|RAB9A	REV__ENSG00000123595|ENST00000464506|RAB9A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.25	3	428.889603	1283.64698	0.18326	7.8597E-05	-0.95964	-0.00041158	-0.77639	-0.00033298	428.88960463652165	33.82	2.3182	33.886	33.154	35.472	0.06636					177	83	4	0	0	0	0.33122	1	6452	6452		4.4062	0.81909	1	1562600	+		55077	15196	31599	31600	67357	67357					0.016500777241844844
VTEDFRGF	8	Unmodified	_VTEDFRGF_					0	0	0			REV__ENST00000490299.5_1_1:213246316-213302929:+|nuORF	REV__ENST00000490299.5_1_1:213246316-213302929:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.8004455566406	2	485.735074	969.455596	0.49391	0.00023991	-0.75247	-0.0003655	-0.25856	-0.00012559	485.73461288738713	52.866	0.24357	52.916	52.74	52.984	0.050575					14	8	2	0	0	0	0.31934	1	12431	12431		24.674	10.092	1	166470	+		55078	15820	31600	31601	67358	67358					-0.030353785162674285
VTEELEDFIM	10	Unmodified	_VTEELEDFIM_					0	0	0		nc|ENSG00000153936|Q7LGA3-2|HS2ST1;ENSG00000153936|ENST00000370550|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	nc|ENSG00000153936|Q7LGA3-2|HS2ST1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2465515136719	3	409.193412	1224.55841	0.019691	8.0575E-06	-0.71849	-0.000294	-0.6988	-0.00028595	409.19308319527113	30.271	0.64219	30.271	29.945	30.587	0					40	22	2	0	0	0	0.32051	1	5573	5573		3.8763	0	1	255710			55079	5094	31601	31602	67359	67359					-0.04489098630506305
VTEELNFLK	9	Unmodified	_VTEELNFLK_					0	0	0		MER3_dup3209|chr5:7862271-7862460:+|1.2126494978331437|0.1574014520478313|2.95|535.0|8|3|sense	MER3_dup3209|chr5:7862271-7862460:+|1.2126494978331437|0.1574014520478313|2.95|535.0|8|3|sense	MER3_dup3209|chr5:7862271-7862460:+|1.2126494978331437|0.1574014520478313|2.95|535.0|8|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.2801513671875	2	546.800414	1091.58628	0.60591	0.00033131	-1.6712	-0.00091382	-1.0653	-0.00058251	546.7995042060625	53.135	0.38435	53.125	52.92	53.305	-0.0096092					26	13	3	0	0	0	0.17696	1	12535	12535		36.506	18.36	1	679760			55080	12529	31602	31603	67360	67360					0.04414592411899321
VTEETLKK	8	Unmodified	_VTEETLKK_					0	0	0		ENSG00000087263|ENST00000566157|OGFOD1;ENST00000569645.1_1_16:56485524-56487341:+|nuORF;ENST00000563733.5_1_16:56485524-56492507:+|nuORF;ENST00000568172.1_1_16:56485524-56500079:+|nuORF	ENSG00000087263|ENST00000566157|OGFOD1	ENSG00000087263|ENST00000566157|OGFOD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.750244140625	2	474.274032	946.533512	0.24521	0.0001163	1.9588	0.000929	2.204	0.0010453	474.2749916111641	24.369	0.563	24.297	23.935	24.498	-0.072559					34	18	3	0	0	0	0.34337	1	3661	3661		5.2307	0	1	77731			55081	1301	31603	31604	67361	67361					0.058106343490862855
VTEETRIK	8	Unmodified	_VTEETRIK_					0	0	0		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2541198730469	2	488.277106	974.53966	0.2456	0.00011992	-1.2013	-0.00058658	-0.95573	-0.00046666	488.27624538253144	21.827	0.42426	21.778	21.548	21.972	-0.049377					22	15	2	0	0	0	0.33993	1	2928	2928		16.942	1.0951	1	49485			55082	4930	31604	31605	67362	67362					0.05137152580618931
VTEGSFVYK	9	Unmodified	_VTEGSFVYK_					0	0	0		ENSG00000057608|ENST00000380191|GDI2	ENSG00000057608|ENST00000380191|GDI2	ENSG00000057608|ENST00000380191|GDI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2661743164062	2	515.266207	1028.51786	0.44568	0.00022964	0.21285	0.00010967	0.65853	0.00033932	515.2661795687727	35.76	1.4326	35.76	35.412	36.844	0					154	51	7	0	0	0	7.3453E-05	4	7171	7146;7171;7221;7271		145.13	63.239	1	8052900			55083	722	31605	31606	67363;67364;67365;67366	67364					0.004743478320506256
VTEGSFVYK	9	Unmodified	_VTEGSFVYK_					0	0	0		ENSG00000057608|ENST00000380191|GDI2	ENSG00000057608|ENST00000380191|GDI2	ENSG00000057608|ENST00000380191|GDI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2664794921875	2	515.266207	1028.51786	0.3237	0.00016679	0.38295	0.00019732	0.70665	0.00036411	515.2662748315215	35.639	0.90104	35.722	35.461	36.362	0.082359					131	32	7	0	0	0	7.3453E-05	3	7170	7120;7170;7221		145.13	63.239	1	9636100			55084	722	31605	31606	67367;67368;67369	67368					0.004743478320506256
VTEGSFVYK	9	Unmodified	_VTEGSFVYK_					0	0	0		ENSG00000057608|ENST00000380191|GDI2	ENSG00000057608|ENST00000380191|GDI2	ENSG00000057608|ENST00000380191|GDI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2664794921875	2	515.266207	1028.51786	0.11944	6.1545E-05	0.60494	0.0003117	0.72438	0.00037325	515.2663927709925	35.657	1.2278	35.743	35.426	36.654	0.086246					151	43	6	0	0	0	7.3453E-05	4	7158	7112;7158;7213;7340		145.13	58.629	1	8831200			55085	722	31605	31606	67370;67371;67372;67373	67371					0.004743478320506256
VTEITKKGTF	10	Unmodified	_VTEITKKGTF_					0	0	0			REV__ENSG00000065183|ENST00000349139|WDR3	REV__ENSG00000065183|ENST00000349139|WDR3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3439331054688	2	562.321514	1122.62847	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115	1	114.98	114.48	115.48	-0.020988								0	0	0	0.38126	1	29836	29836		1.6526	0	1		+		55086	13659	31606	31607	67374	67374					0.07206567820298915
VTEKVLAAVYK	11	Unmodified	_VTEKVLAAVYK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000136872|ENST00000647789|ALDOB;ALDOB|p.L271Ffs*7|1|0.36|ENSG00000136872|chr9:101425029-101425030|-/A|frameshift_variant;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.58038330078125	3	407.579818	1219.71762	-0.35494	-0.00014467	0.082567	3.3653E-05	-0.27238	-0.00011102	407.5799933925831	38.575	1.2351	38.575	37.98	39.215	0					99	43	4	0	0	0	0.00097064	3	8027	8027;8054;8107		83.455	62.577	1	2791800			55087	4896;2236	31607	31608	67375;67376;67377	67375					0.11655402779774704
VTEKVLAAVYK	11	Unmodified	_VTEKVLAAVYK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000136872|ENST00000647789|ALDOB;ALDOB|p.L271Ffs*7|1|0.36|ENSG00000136872|chr9:101425029-101425030|-/A|frameshift_variant;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.8663330078125	2	610.866089	1219.71762	0.035354	2.1597E-05	0.73516	0.00044909	0.77052	0.00047068	610.8665300342119	38.57	0.69251	38.57	38.347	39.04	0					73	24	4	0	0	0	1.3918E-12	4	8077	8032;8077;8132;8191		160.97	123.2	1	1424600			55088	4896;2236	31607	31608	67378;67379;67380;67381	67379					0.11655402779774704
VTEKVLAAVYK	11	Unmodified	_VTEKVLAAVYK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000136872|ENST00000647789|ALDOB;ALDOB|p.L271Ffs*7|1|0.36|ENSG00000136872|chr9:101425029-101425030|-/A|frameshift_variant;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5798034667969	3	407.579818	1219.71762	0.034605	1.4104E-05	-0.09599	-3.9124E-05	-0.061385	-2.5019E-05	407.5798034691532	38.483	0.87802	38.574	38.347	39.225	0.090881					107	31	5	0	0	0	0.00031953	2	8046	8001;8046		83.455	65.115	1	3289600			55089	4896;2236	31607	31608	67382;67383	67383					0.11655402779774704
VTEKVLAAVYK	11	Unmodified	_VTEKVLAAVYK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000136872|ENST00000647789|ALDOB;ALDOB|p.L271Ffs*7|1|0.36|ENSG00000136872|chr9:101425029-101425030|-/A|frameshift_variant;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.8670043945312	2	610.866089	1219.71762	0.37355	0.00022819	0.52212	0.00031894	0.89567	0.00054713	610.8663379235824	38.51	0.70292	38.601	38.373	39.076	0.090881					64	25	4	0	0	0	1.3918E-12	2	8020	8020;8066		160.97	116.58	1	1550400			55090	4896;2236	31607	31608	67384;67385	67384					0.11655402779774704
VTEKVLAAVYK	11	Unmodified	_VTEKVLAAVYK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000136872|ENST00000647789|ALDOB;ALDOB|p.L271Ffs*7|1|0.36|ENSG00000136872|chr9:101425029-101425030|-/A|frameshift_variant;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.57977294921875	3	407.579818	1219.71762	0.093637	3.8164E-05	-0.078789	-3.2113E-05	0.014848	6.0517E-06	407.5797834984819	38.487	1.1606	38.584	38.348	39.509	0.097527					105	41	5	0	0	0	0.00097064	2	8038	7994;8038		77.813	55.327	1	3191700			55091	4896;2236	31607	31608	67386;67387	67387					0.11655402779774704
VTEKVLAAVYK	11	Unmodified	_VTEKVLAAVYK_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENSG00000136872|ENST00000647789|ALDOB;ALDOB|p.L271Ffs*7|1|0.36|ENSG00000136872|chr9:101425029-101425030|-/A|frameshift_variant;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.8666381835938	2	610.866089	1219.71762	0.35951	0.00021961	0.44036	0.000269	0.79987	0.00048861	610.8662724595712	38.496	0.6061	38.594	38.378	38.984	0.097527					66	21	4	0	0	0	5.17E-09	3	8008	8008;8058;8118		150.06	112.29	1	1375500			55092	4896;2236	31607	31608	67388;67389;67390	67388					0.11655402779774704
VTEPDLQMS	9	Unmodified	_VTEPDLQMS_					0	0	0			REV__ENSG00000076201|ENST00000265562|PTPN23	REV__ENSG00000076201|ENST00000265562|PTPN23	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8002624511719	2	510.239332	1018.46411	0.35483	0.00018105	1.866	0.00095209	2.2208	0.0011331	510.7417936804545	68.802	0.28883	68.874	68.729	69.018	0.071938					12	10	2	0	0	0	0.25066	1	17355	17355		7.2892	0	1	125570	+		55093	13825	31608	31609	67391	67391					-0.04438192661962148
VTEQRKVV	8	Unmodified	_VTEQRKVV_					0	0	0			REV__ENSG00000177311|ENST00000321464|ZBTB38	REV__ENSG00000177311|ENST00000321464|ZBTB38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7889099121094	2	479.787641	957.56073	-0.10788	-5.1759E-05	2.0029	0.00096095	1.895	0.00090919	479.7885859588934	15.162	0.33721	15.162	15.044	15.382	0					26	11	3	0	0	0	0.42642	1	948	948		13.906	0	1	180160	+		55094	17982	31609	31610	67392	67392					0.08025162680144149
VTEQRKVV	8	Unmodified	_VTEQRKVV_					0	0	0			REV__ENSG00000177311|ENST00000321464|ZBTB38	REV__ENSG00000177311|ENST00000321464|ZBTB38	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.787641	957.56073	0.032288	1.5491E-05	1.9799	0.00094994	2.0122	0.00096543	479.78863387572903	15.272	0.33626	15.162	15.01	15.347	-0.10981	-0.006445	2.7387E-06	NaN	13.906	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189220	+		55095	17982	31609	31610							0.08025162680144149
VTEQRKVV	8	Unmodified	_VTEQRKVV_					0	0	0			REV__ENSG00000177311|ENST00000321464|ZBTB38	REV__ENSG00000177311|ENST00000321464|ZBTB38	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	479.787641	957.56073	-0.026525	-1.2727E-05	1.9582	0.00093951	1.9317	0.00092679	479.7886602549371	15.246	0.35721	15.182	15.1	15.457	-0.064413	0.012835	-1.8105E-05	NaN	13.906	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165320	+		55096	17982	31609	31610							0.08025162680144149
VTERRPLH	8	Unmodified	_VTERRPLH_					0	0	0		ENST00000476594.1_1_7:45077926-45102799:+|nuORF;ENST00000480658.5_1_7:45067303-45109452:+|nuORF;ENST00000478582.5_1_7:45077926-45109516:+|nuORF;ENST00000492883.5_1_7:45067303-45109516:+|nuORF;ENST00000472223.5_1_7:45067303-45110133:+|nuORF;nc|ENSG00000136280|Q9BSQ5-3|CCM2;ENSG00000136280|ENST00000258781|CCM2;nc|ENSG00000136280|Q9BSQ5-2|CCM2;ENST00000461377.5_1_7:45039147-45115653:+|nuORF	ENST00000476594.1_1_7:45077926-45102799:+|nuORF	ENST00000476594.1_1_7:45077926-45102799:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2803649902344	2	504.290882	1006.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.841	1	91.932	91.432	92.432	0.090668								0	0	0	0.35663	1	24396	24396		11.64	0	1				55097	3968	31610	31611	67393	67393					0.06419100631501351
VTERRPLH	8	Unmodified	_VTERRPLH_					0	0	0		ENST00000476594.1_1_7:45077926-45102799:+|nuORF;ENST00000480658.5_1_7:45067303-45109452:+|nuORF;ENST00000478582.5_1_7:45077926-45109516:+|nuORF;ENST00000492883.5_1_7:45067303-45109516:+|nuORF;ENST00000472223.5_1_7:45067303-45110133:+|nuORF;nc|ENSG00000136280|Q9BSQ5-3|CCM2;ENSG00000136280|ENST00000258781|CCM2;nc|ENSG00000136280|Q9BSQ5-2|CCM2;ENST00000461377.5_1_7:45039147-45115653:+|nuORF	ENST00000476594.1_1_7:45077926-45102799:+|nuORF	ENST00000476594.1_1_7:45077926-45102799:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2802734375	2	504.290882	1006.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.301	1	92.391	91.891	92.891	0.089195								0	0	0	0.35663	1	24538	24538		11.64	0	1				55098	3968	31610	31611	67394	67394					0.06419100631501351
VTEVRALSI	9	Unmodified	_VTEVRALSI_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2787170410156	2	494.295299	986.576045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.108	1	82.084	81.584	82.584	-0.02404								0	0	0	0.22065	1	21401	21401		15.847	0	1				55099	3999	31611	31612	67395	67395					0.08222029477337855
VTEVSHCVQK	10	Unmodified	_VTEVSHCVQK_					0	0	0			REV__ENSG00000161860|ENST00000293695|SYCE2	REV__ENSG00000161860|ENST00000293695|SYCE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.287353515625	2	565.287148	1128.55974	0.076097	4.3017E-05	-0.27954	-0.00015802	-0.20344	-0.000115	565.2868331067692	31.442	0.94908	31.442	30.918	31.867	0					75	33	3	0	0	0	0.22916	2	5849	5849;5892		29.082	0	1	895020	+		55100	16952	31612	31613	67396;67397	67396					0.0006058024891899549
VTEVSHCVQK	10	Unmodified	_VTEVSHCVQK_					0	0	0			REV__ENSG00000161860|ENST00000293695|SYCE2	REV__ENSG00000161860|ENST00000293695|SYCE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.2869262695312	2	565.287148	1128.55974	0.18592	0.0001051	-0.41812	-0.00023636	-0.2322	-0.00013126	565.2867632645648	31.42	1.3416	31.463	30.511	31.852	0.042366					84	47	3	0	0	0	0.2811	1	5894	5894		22.736	0	1	1119400	+		55101	16952	31612	31613	67398	67398					0.0006058024891899549
VTEVSHCVQK	10	Unmodified	_VTEVSHCVQK_					0	0	0			REV__ENSG00000161860|ENST00000293695|SYCE2	REV__ENSG00000161860|ENST00000293695|SYCE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.2872314453125	2	565.287148	1128.55974	0.23061	0.00013036	-0.5454	-0.00030831	-0.31479	-0.00017795	565.2865355760451	31.396	1.069	31.437	30.88	31.949	0.040991					74	38	3	0	0	0	0.22916	2	5826	5826;5879		29.082	0	1	1149600	+		55102	16952	31612	31613	67399;67400	67399					0.0006058024891899549
VTFATILQVNK	11	Unmodified	_VTFATILQVNK_					0	0	0		ENSG00000185652|ENST00000423158|NTF3	ENSG00000185652|ENST00000423158|NTF3	ENSG00000185652|ENST00000423158|NTF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	617.8651123046875	2	617.363713	1232.71287	0.29974	0.00018505	-0.066324	-4.0946E-05	0.23341	0.0001441	617.3634288676998	62.565	0.4907	62.565	62.341	62.832	0					39	17	3	0	0	0	1.5991E-08	1	15449	15449		135.72	102.93	1	330480			55103	7547	31613	31614	67401	67401					0.105825186370339
VTFEKQWFY	9	Unmodified	_VTFEKQWFY_					0	0	0		ENST00000473131.5_1_20:5924535-5931132:-|nuORF;nc|ENSG00000089195|Q9UJA5-3|TRMT6;nc|ENSG00000089195|Q9UJA5-2|TRMT6;ENSG00000089195|ENST00000203001|TRMT6	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	ENST00000473131.5_1_20:5924535-5931132:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.7579956054688	2	624.308406	1246.60226	0.37807	0.00023603	-1.3433	-0.00083866	-0.96528	-0.00060263	624.8083582444201	63.196	0.32574	63.196	63.117	63.443	0					25	11	3	0	0	0	0.25527	1	15654	15654		8.7454	2.5396	1	232410			55104	1353	31614	31615	67402	67402					-0.011177013511769474
VTFGITNCFLL	11	Unmodified	_VTFGITNCFLL_					0	0	0		ENSG00000196184|ENST00000423932|OR10J1;nc|ENSG00000196184|P30954|OR10J1	ENSG00000196184|ENST00000423932|OR10J1	ENSG00000196184|ENST00000423932|OR10J1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.88629150390625	3	409.886253	1226.63693	-0.134	-5.4927E-05	-0.027682	-1.1347E-05	-0.16169	-6.6273E-05	409.88631730758703	26.823	1.1147	26.823	26.528	27.643	0					99	38	4	0	0	0	0.39802	1	4472	4472		6.2344	0	1	1015300			55105	7833	31615	31616	67403	67403					0.03267798465253691
VTFGSIFGY	9	Unmodified	_VTFGSIFGY_					0	0	0		ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7501525878906	2	495.750193	989.485833	0.63341	0.00031401	-0.5224	-0.00025898	0.11101	5.5033E-05	495.74979808032634	83.039	0.74792	83.039	82.756	83.504	0					69	28	4	0	0	0	0.0061338	3	21719	21674;21719;21775		85.357	21.794	1	729120			55106	1464	31616	31617	67404;67405;67406	67405					-0.009330198511065646
VTFGSIFGY	9	Unmodified	_VTFGSIFGY_					0	0	0		ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7499694824219	2	495.750193	989.485833	0.53735	0.00026639	-0.48027	-0.0002381	0.057077	2.8296E-05	495.7498461776344	82.923	0.5963	82.996	82.778	83.375	0.073097					51	22	3	0	0	0	0.0085732	3	21643	21643;21698;21750		81.613	18.05	1	818360			55107	1464	31616	31617	67407;67408;67409	67407					-0.009330198511065646
VTFGSIFGY	9	Unmodified	_VTFGSIFGY_					0	0	0		ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	ENSG00000096092|ENST00000211314|TMEM14A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7501220703125	2	495.750193	989.485833	0.53503	0.00026524	-0.35931	-0.00017813	0.17572	8.7111E-05	495.749869796865	83.058	0.82851	83.037	82.793	83.622	-0.020584					68	32	3	0	0	0	0.00268	3	21728	21679;21728;21774		104.8	41.236	1	897030			55108	1464	31616	31617	67410;67411;67412	67411					-0.009330198511065646
VTFGVITSII	10	Unmodified	_VTFGVITSII_					0	0	0		ENSG00000163823|ENST00000296140|CCR1	ENSG00000163823|ENST00000296140|CCR1	ENSG00000163823|ENST00000296140|CCR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8275756835938	2	525.3157	1048.61685	0.58847	0.00030913	0.056465	2.9662E-05	0.64493	0.00033879	525.3157367287364	88.68	0.27959	88.677	88.519	88.799	-0.0028381					14	10	2	0	0	0	0.31143	1	23422	23422		8.1555	2.4237	1	91242			55109	5741	31617	31618	67413	67413					0.09448370796940253
VTFHFLAK	8	Unmodified	_VTFHFLAK_					0	0	0		nc|ENSG00000186575|P35240-9|NF2;nc|ENSG00000186575|P35240-7|NF2;nc|ENSG00000186575|P35240-6|NF2;nc|ENSG00000186575|P35240-8|NF2;nc|ENSG00000186575|P35240-3|NF2;ENSG00000186575|ENST00000338641|NF2;nc|ENSG00000186575|P35240-2|NF2	nc|ENSG00000186575|P35240-9|NF2	nc|ENSG00000186575|P35240-9|NF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.24169921875	2	481.776545	961.538538	-0.080128	-3.8604E-05	0.081018	3.9033E-05	0.00089015	4.2885E-07	481.7763937915163	15.269	1.0468	15.269	14.9	15.947	0					84	36	4	0	0	0	0.34167	1	1044	1044		11.64	2.2572	1	1435600			55110	7628	31618	31619	67414	67414					0.056229830023767136
VTFKSIVAF	9	Unmodified	_VTFKSIVAF_					0	0	0		ENSG00000065485|ENST00000316218|PDIA5;nc|ENSG00000065485|Q14554-2|PDIA5	ENSG00000065485|ENST00000316218|PDIA5	ENSG00000065485|ENST00000316218|PDIA5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.31341552734375	2	506.29731	1010.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.93	1	67.914	67.414	68.414	-0.016296								0	0	0	0.23091	1	17072	17072		12.532	0	1				55111	815	31619	31620	67415	67415					0.07520118971046941
VTFNSALAQK	10	Unmodified	_VTFNSALAQK_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7984008789062	2	539.798206	1077.58186	0.67702	0.00036545	0.14007	7.561E-05	0.81709	0.00044106	539.7982775646474	37.776	0.58889	37.776	37.56	38.149	0					45	20	3	0	0	0	1.7694E-13	2	7802	7802;7849		182.24	89.071	1	723970			55112	3949	31620	31621	67416;67417	67416					0.046171279889904326
VTFNSALAQK	10	Unmodified	_VTFNSALAQK_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7986450195312	2	539.798206	1077.58186	0.51568	0.00027836	0.26907	0.00014524	0.78475	0.00042361	539.7982889885793	37.703	0.51631	37.794	37.555	38.072	0.090881					33	18	2	0	0	0	1.7694E-13	2	7815	7769;7815		182.24	89.071	1	813060			55113	3949	31620	31621	67418;67419	67419					0.046171279889904326
VTFNSALAQK	10	Unmodified	_VTFNSALAQK_					0	0	0		nc|ENSG00000136156|Q9Y287-2|ITM2B;ENSG00000136156|ENST00000647800|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	nc|ENSG00000136156|Q9Y287-2|ITM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.79833984375	2	539.798206	1077.58186	0.52028	0.00028085	0.28022	0.00015126	0.8005	0.00043211	539.798268163582	37.644	0.62095	37.742	37.529	38.15	0.097527					51	22	3	0	0	0	1.7694E-13	1	7749	7749		182.24	89.071	1	781120			55114	3949	31620	31621	67420	67420					0.046171279889904326
VTFPDIIRNYK	11	Unmodified	_VTFPDIIRNYK_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.9225769042969	3	455.922355	1364.74524	0.45127	0.00020574	-0.20846	-9.5042E-05	0.24281	0.0001107	455.92220804544144	56.561	1.9308	56.561	55.594	57.525	0					203	70	4	0	0	0	0.053629	5	13560	13462;13510;13560;13611;13664		52.193	24.012	1	5369700			55115	2643	31621	31622	67421;67422;67423;67424;67425	67423					0.07745306040033029
VTFPDIIRNYK	11	Unmodified	_VTFPDIIRNYK_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.9225769042969	3	455.922355	1364.74524	0.59148	0.00026967	-0.29761	-0.00013569	0.29387	0.00013398	455.922175637391	56.383	1.7137	56.461	55.683	57.397	0.078674					190	63	4	0	0	0	0.058973	5	13469	13422;13469;13519;13572;13622		50.648	23.519	1	5925700			55116	2643	31621	31622	67426;67427;67428;67429;67430	67427					0.07745306040033029
VTFPDIIRNYK	11	Unmodified	_VTFPDIIRNYK_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.9225769042969	3	455.922355	1364.74524	0.74322	0.00033885	-0.37124	-0.00016926	0.37198	0.0001696	455.92214458830614	56.661	1.9347	56.642	55.646	57.58	-0.019081					205	70	4	0	0	0	0.048078	5	13591	13487;13538;13591;13639;13692		53.798	24.517	1	5889700			55117	2643	31621	31622	67431;67432;67433;67434;67435	67433					0.07745306040033029
VTFQGNLWMW	10	Unmodified	_VTFQGNLWMW_					0	0	0		ENSG00000256797|ENST00000535540|KLRF2	ENSG00000256797|ENST00000535540|KLRF2	ENSG00000256797|ENST00000535540|KLRF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.2499694824219	3	427.874348	1280.60121	-0.21347	-9.1339E-05	-2.6693	-0.0011421	-2.8827	-0.0012334	427.87347842868917	33.353	0.44175	33.42	33.297	33.739	0.066704					25	15	2	0	0	0	0.31942	1	6484	6484		3.5871	0.85186	1	142350			55118	8630	31622	31623	67436	67436					-0.027862389917572727
VTFRKILSHF	10	Unmodified	_VTFRKILSHF_					0	0	0		nc|ENSG00000144559|Q96BW9|TAMM41;ENST00000494388.1_1_3:11885478-11888134:-|nuORF;nc|ENSG00000144559|Q96BW9-2|TAMM41;ENSG00000144559|ENST00000455809|TAMM41	nc|ENSG00000144559|Q96BW9|TAMM41	nc|ENSG00000144559|Q96BW9|TAMM41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.2188415527344	3	416.580152	1246.71863	-0.14923	-6.2167E-05	-0.19837	-8.2639E-05	-0.34761	-0.00014481	416.57999928794555	38.35	0.80319	38.35	37.82	38.623	0					38	28	2	0	0	0	0.31701	1	7983	7983		1.2148	0.10508	1	205990			55119	12738	31623	31624	67437	67437					0.10513661939353369
VTFRPLFFK	9	Unmodified	_VTFRPLFFK_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.8399047851562	2	577.839677	1153.6648	0.39016	0.00022545	-0.11059	-6.3905E-05	0.27957	0.00016154	577.8395766896381	57.246	0.50914	57.246	56.986	57.495	0					43	18	3	0	0	0	0.086462	1	13795	13795		40.239	18.493	1	545740			55120	2868	31624	31625	67438	67438					0.09411489507647275
VTFRPLFFK	9	Unmodified	_VTFRPLFFK_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.8397216796875	2	577.839677	1153.6648	0.32921	0.00019023	0.058064	3.3552E-05	0.38728	0.00022378	577.8394454667246	57.06	0.43045	57.139	56.935	57.365	0.078674					40	15	4	0	0	0	0.011693	1	13749	13749		76.825	48.338	1	618310			55121	2868	31624	31625	67439	67439					0.09411489507647275
VTFRPLFFK	9	Unmodified	_VTFRPLFFK_					0	0	0		ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	ENSG00000119285|ENST00000366582|HEATR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.8400268554688	2	577.839677	1153.6648	0.12563	7.2594E-05	0.06201	3.5832E-05	0.18764	0.00010843	577.8397848695159	57.335	0.54688	57.317	57.035	57.582	-0.017197					48	19	4	0	0	0	0.032589	1	13830	13830		59.368	25.266	1	622190			55122	2868	31624	31625	67440	67440					0.09411489507647275
VTFSCWHLN	9	Unmodified	_VTFSCWHLN_					0	0	0			REV__ENST00000395246.5_1_5:130694918-130695191:+|nuORF	REV__ENST00000395246.5_1_5:130694918-130695191:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.759033203125	2	553.758027	1105.5015	0.23232	0.00012865	1.9419	0.0010754	2.1742	0.001204	553.7591084222931	26.526	0.43822	26.526	26.321	26.759	0					31	14	3	0	0	0	0.29638	1	4384	4384		9.3831	0.78985	1	139530	+		55123	20629	31625	31626	67441	67441					-0.047030566056946554
VTFVDVGVV	9	Unmodified	_VTFVDVGVV_					0	0	0		ENSG00000255582|ENST00000542433|OR10G2	ENSG00000255582|ENST00000542433|OR10G2	ENSG00000255582|ENST00000542433|OR10G2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.7552795410156	2	467.765843	933.517133	0.04464	2.0881E-05	1.0172	0.00047579	1.0618	0.00049668	467.7665008094689	62.855	0.45444	62.855	62.689	63.143	0					38	16	3	0	0	0	0.24581	1	15551	15551		16.942	0	1	431640			55124	8620	31626	31627	67442	67442					0.04771553183002197
VTFVDVGVV	9	Unmodified	_VTFVDVGVV_					0	0	0		ENSG00000255582|ENST00000542433|OR10G2	ENSG00000255582|ENST00000542433|OR10G2	ENSG00000255582|ENST00000542433|OR10G2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	467.765843	933.517133	0.04464	2.0881E-05	1.0172	0.00047579	1.0618	0.00049668	467.7665008094689	62.855	0.45444	62.855	62.689	63.143	0	0.013371	0.00014006	NaN	16.942	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431640			55125	8620	31626	31627							0.04771553183002197
VTFVDVGVV	9	Unmodified	_VTFVDVGVV_					0	0	0		ENSG00000255582|ENST00000542433|OR10G2	ENSG00000255582|ENST00000542433|OR10G2	ENSG00000255582|ENST00000542433|OR10G2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	467.765843	933.517133	0.14025	6.5605E-05	0.86711	0.00040561	1.0074	0.00047121	467.76617805392715	62.731	0.6038	62.827	62.544	63.148	0.095722	-0.014402	-3.118E-07	NaN	16.942	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298230			55126	8620	31626	31627							0.04771553183002197
VTFVLVAQF	9	Unmodified	_VTFVLVAQF_					0	0	0		ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000196557|O95180-2|CACNA1H	ENSG00000196557|ENST00000348261|CACNA1H	ENSG00000196557|ENST00000348261|CACNA1H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.7890319824219	2	512.29731	1022.58007	0.3965	0.00020313	1.4543	0.00074502	1.8508	0.00094815	512.2982224270445	54.283	0.33131	54.267	54.057	54.389	-0.015919					33	11	4	0	0	0	0.23784	1	12812	12812		13.906	3.8321	1	694960			55127	7879	31627	31628	67443	67443					0.06968118971042259
VTFVLVAQF	9	Unmodified	_VTFVLVAQF_					0	0	0		ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000196557|O95180-2|CACNA1H	ENSG00000196557|ENST00000348261|CACNA1H	ENSG00000196557|ENST00000348261|CACNA1H	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	512.29731	1022.58007	0.57239	0.00029323	1.7433	0.00089309	2.3157	0.0011863	512.2983102514329	54.188	0.40141	54.188	53.946	54.348	0	-0.019199	7.8578E-05	NaN	13.906	31	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	606280			55128	7879	31627	31628							0.06968118971042259
VTFVLVAQF	9	Unmodified	_VTFVLVAQF_					0	0	0		ENSG00000196557|ENST00000348261|CACNA1H;nc|ENSG00000196557|O95180-2|CACNA1H	ENSG00000196557|ENST00000348261|CACNA1H	ENSG00000196557|ENST00000348261|CACNA1H	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	512.29731	1022.58007	0.37245	0.00019081	1.8711	0.00095854	2.2435	0.0011494	512.2984518200404	54.103	0.33963	54.167	53.96	54.3	0.063202	-0.040477	0.00020949	NaN	13.906	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	549720			55129	7879	31627	31628							0.06968118971042259
VTGGKYNV	8	Unmodified	_VTGGKYNV_					0	0	0		ENST00000434805.1_1_1:35816564-35817152:+|nuORF	ENST00000434805.1_1_1:35816564-35817152:+|nuORF	ENST00000434805.1_1_1:35816564-35817152:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.2507629394531	2	419.226885	836.439217	-0.14022	-5.8784E-05	0.31163	0.00013064	0.17141	7.186E-05	419.2270098952895	26.601	0.28968	26.601	26.44	26.729	0					14	9	2	0	0	0	0.34353	1	4416	4416		4.756	0	1	52684			55130	10501	31628	31629	67444	67444					0.014455403176043546
VTGIEELRTK	10	Unmodified	_VTGIEELRTK_					0	0	0		CCDC18|p.L854Ffs*13|1|0.09|ENSG00000122483|chr1:93236351-93236352|-/CAGTAAACATTTTAAATTCA|frameshift_variant;nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18	CCDC18|p.L854Ffs*13|1|0.09|ENSG00000122483|chr1:93236351-93236352|-/CAGTAAACATTTTAAATTCA|frameshift_variant	CCDC18|p.L854Ffs*13|1|0.09|ENSG00000122483|chr1:93236351-93236352|-/CAGTAAACATTTTAAATTCA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.2846069335938	2	573.32987	1144.64519	0.17743	0.00010172	2.9741	0.0017051	3.1515	0.0018068	573.3312635269781	62.047	0.48547	62.047	61.755	62.24	0					28	17	2	0	0	0	0.31794	1	15220	15220		8.1555	1.0538	1	202590			55131	94	31629	31630	67445	67445					0.0786506870622361
VTGIEELRTK	10	Unmodified	_VTGIEELRTK_					0	0	0		CCDC18|p.L854Ffs*13|1|0.09|ENSG00000122483|chr1:93236351-93236352|-/CAGTAAACATTTTAAATTCA|frameshift_variant;nc|ENSG00000122483|Q5T9S5-2|CCDC18;nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18	CCDC18|p.L854Ffs*13|1|0.09|ENSG00000122483|chr1:93236351-93236352|-/CAGTAAACATTTTAAATTCA|frameshift_variant	CCDC18|p.L854Ffs*13|1|0.09|ENSG00000122483|chr1:93236351-93236352|-/CAGTAAACATTTTAAATTCA|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	573.32987	1144.64519	0.065159	3.7358E-05	2.893	0.0016586	2.9582	0.001696	573.331342271033	61.942	0.54294	61.934	61.784	62.327	-0.0085564	-0.073085	-0.00027871	NaN	8.1555	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157560			55132	94	31629	31630							0.0786506870622361
VTGISLCLFII	11	Unmodified	_VTGISLCLFII_					0	0	0		THSD1|p.D742Vfs*6|1|0.1|ENSG00000136114|chr13:52377745-52377745|T/-|frameshift_variant;nc|ENSG00000136114|Q9NS62-2|THSD1;ENSG00000136114|ENST00000258613|THSD1	THSD1|p.D742Vfs*6|1|0.1|ENSG00000136114|chr13:52377745-52377745|T/-|frameshift_variant	THSD1|p.D742Vfs*6|1|0.1|ENSG00000136114|chr13:52377745-52377745|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8458862304688	2	589.84631	1177.67807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.95	1	119.93	119.43	120.43	-0.024361								0	0	0	0.38126	1	30950	30950		1.1933	0	1				55133	3943	31630	31631	67446	67446					0.0963355950470941
VTGKEYVDIQ	10	Unmodified	_VTGKEYVDIQ_					0	0	0			REV__ENST00000503240.5_1_5:148742189-148742453:+|nuORF	REV__ENST00000503240.5_1_5:148742189-148742453:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3193359375	2	576.300778	1150.587	0.45516	0.00026231	2.5479	0.0014684	3.0031	0.0017307	576.3013950011136	44.969	0.71886	45.037	44.765	45.484	0.068569					66	25	4	0	0	0	0.25219	1	9986	9986		26.268	0.86883	1	411480	+		55134	16316	31631	31632	67447	67447					0.01773387060939058
VTGMDSVNGQF	11	Unmodified	_VTGMDSVNGQF_					0	0	0			REV__ENST00000303407.11_3_9:136898300-136898372:-|nuORF	REV__ENST00000303407.11_3_9:136898300-136898372:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.76123046875	2	577.760963	1153.50737	0.47926	0.0002769	-0.15399	-8.8968E-05	0.32527	0.00018793	577.7607405836379	65.886	1.9292	65.975	65.408	67.337	0.088882					172	69	4	0	0	0	0.36943	1	16646	16646		15.248	1.3424	1	944880	+		55135	19839	31632	31633	67448	67448					-0.06324002884684887
VTGPLVLNR	9	Unmodified	_VTGPLVLNR_					0	0	0		ENST00000456481.1_1_7:137407104-137407545:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000553205.1_1_12:112843569-112844143:-|nuORF	ENST00000456481.1_1_7:137407104-137407545:+|nuORF	ENST00000456481.1_1_7:137407104-137407545:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7740783691406	2	484.798009	967.581465	0.38818	0.00018819	-0.073072	-3.5425E-05	0.31511	0.00015276	484.7980675131861	40.62	0.61123	40.713	40.42	41.031	0.092674					51	22	3	0	0	0	0.22596	1	8599	8599		21.747	4.6338	1	371950			55136	1340	31633	31634	67449	67449					0.09637753059791976
VTGPLVLNR	9	Unmodified	_VTGPLVLNR_					0	0	0		ENST00000456481.1_1_7:137407104-137407545:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000553205.1_1_12:112843569-112844143:-|nuORF	ENST00000456481.1_1_7:137407104-137407545:+|nuORF	ENST00000456481.1_1_7:137407104-137407545:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	484.798009	967.581465	0.24806	0.00012026	0.14887	7.217E-05	0.39692	0.00019243	484.7980025593794	40.794	0.48462	40.794	40.526	41.01	0	0.070917	0.00015034	NaN	15.847	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265490			55137	1340	31633	31634							0.09637753059791976
VTGPLVLNR	9	Unmodified	_VTGPLVLNR_					0	0	0		ENST00000456481.1_1_7:137407104-137407545:+|nuORF;ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000553205.1_1_12:112843569-112844143:-|nuORF	ENST00000456481.1_1_7:137407104-137407545:+|nuORF	ENST00000456481.1_1_7:137407104-137407545:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	484.798009	967.581465	0.28729	0.00013928	-0.14713	-7.1327E-05	0.14016	6.795E-05	484.7978623739941	40.562	0.43248	40.662	40.479	40.912	0.099407	-0.060923	-0.00013666	NaN	15.847	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284720			55138	1340	31633	31634							0.09637753059791976
VTGPSQISK	9	Unmodified	_VTGPSQISK_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2501525878906	2	458.758549	915.502546	-0.064096	-2.9405E-05	-0.024503	-1.1241E-05	-0.088599	-4.0646E-05	458.758460202323	23.193	0.77458	23.106	22.883	23.657	-0.08761					53	27	3	0	0	0	0.22143	1	3397	3397		19.362	0.98885	1	146490			55139	3332	31634	31635	67450	67450					0.041414810348555875
VTGRKTDFT	9	Unmodified	_VTGRKTDFT_					0	0	0		nc|ENSG00000138821|Q9C0K1-2|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7893676757812	2	512.774731	1023.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.095	1	92.186	91.686	92.686	0.090126								0	0	0	0.21353	1	24475	24475		18.146	0.011366	1				55140	4200	31635	31636	67451	67451					0.024082684378640806
VTGRKTDFT	9	Unmodified	_VTGRKTDFT_					0	0	0		nc|ENSG00000138821|Q9C0K1-2|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7892456054688	2	512.774731	1023.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.088	1	92.088	91.588	92.588	0.00046539								0	0	0	0.21353	1	24472	24472		18.146	0	1				55141	4200	31635	31636	67452	67452					0.024082684378640806
VTGSIYRPK	9	Unmodified	_VTGSIYRPK_					0	0	0			REV__ARFGEF1|p.W1378Gfs*2|1|0.21|ENSG00000066777|chr8:67224979-67224979|A/-|frameshift_variant	REV__ARFGEF1|p.W1378Gfs*2|1|0.21|ENSG00000066777|chr8:67224979-67224979|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.28106689453125	2	510.795466	1019.57638	0.32142	0.00016418	-0.28439	-0.00014527	0.037028	1.8914E-05	510.79550755244156	29.902	0.54878	29.914	29.654	30.202	0.012266					27	18	2	0	0	0	0.23784	1	5444	5444		13.906	3.8321	1	61931	+		55142	13108	31636	31637	67453	67453					0.06737449197191836
VTGTAGDSLTV	11	Unmodified	_VTGTAGDSLTV_					0	0	0		ENSG00000186407|ENST00000392619|CD300E	ENSG00000186407|ENST00000392619|CD300E	ENSG00000186407|ENST00000392619|CD300E	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.7735900878906	2	510.764029	1019.5135	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.583	1	32.638	32.138	33.138	0.054371								0	0	0	0.24958	1	6220	6220		27.629	1.3607	1				55143	7610	31637	31638	67454	67454					0.004528386184915689
VTGTNTLK	8	Unmodified	_VTGTNTLK_					0	0	0			REV__ENSG00000187210|ENST00000376730|GCNT1	REV__ENSG00000187210|ENST00000376730|GCNT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.55804443359375	2	417.239993	832.465432	-0.12426	-5.1845E-05	-0.11007	-4.5926E-05	-0.23433	-9.7771E-05	417.23980586657876	15.176	0.40753	15.111	14.984	15.391	-0.064413					19	13	2	0	0	0	0.34247	1	1019	1019		8.5933	0	1	87711	+		55144	18495	31638	31639	67455	67455					0.042498094890902394
VTGYCRKKC	9	Unmodified	_VTGYCRKKC_					0	0	0		ENSG00000185982|ENST00000334391|DEFB128	ENSG00000185982|ENST00000334391|DEFB128	ENSG00000185982|ENST00000334391|DEFB128	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8427124023438	2	529.267704	1056.52086	0.222	0.0001175	1.9324	0.0010228	2.1544	0.0011403	529.2687052786506	46.159	0.54722	46.219	45.9	46.448	0.059834					38	19	3	0	0	0	0.2451	1	10320	10320		6.7232	4.8789	1	633990			55145	7577	31639	31640	67456	67456					-0.005144235864463553
VTHDFSGTI	9	Unmodified	_VTHDFSGTI_					0	0	0			REV__nc|ENSG00000123977|Q8N136-2|DAW1	REV__nc|ENSG00000123977|Q8N136-2|DAW1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2485656738281	2	488.740357	975.46616	0.40464	0.00019776	-0.4289	-0.00020962	-0.024261	-1.1857E-05	488.7400838663674	79.391	0.68651	79.452	79.141	79.828	0.061417					50	29	3	0	0	0	0.25622	1	20661	20661		7.2892	2.0586	1	210880	+		55146	15203	31640	31641	67457	67457					-0.02255395861834586
VTHGLTHAL	9	Unmodified	_VTHGLTHAL_					0	0	0			REV__ENST00000396613.7_1_9:36162649-36162787:+|nuORF	REV__ENST00000396613.7_1_9:36162649-36162787:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.2463073730469	2	474.766709	947.518865	-0.20398	-9.6843E-05	3.136	0.0014889	2.932	0.001392	474.7681736319254	13.257	0.19148	13.257	13.174	13.365	0					10	6	2	0	0	0	0.25938	1	348	348		4.3292	1.44	1	31459	+		55147	20655	31641	31642	67458	67458					0.04300606991591849
VTHIRQKI	8	Unmodified	_VTHIRQKI_					0	0	0			REV__nc|ENSG00000175449|Q8TAC1|RFESD	REV__nc|ENSG00000175449|Q8TAC1|RFESD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.3084411621094	2	497.811451	993.608348	0.12167	6.057E-05	-1.192	-0.0005934	-1.0704	-0.00053283	497.81072017586064	31.173	0.54686	31.215	30.996	31.543	0.042366					33	19	3	0	0	0	0.34131	1	5802	5802		12.532	0	1	230270	+		55148	17891	31642	31643	67459	67459					0.11128861670999868
VTHNGPELS	9	Unmodified	_VTHNGPELS_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.2513122558594	2	477.237981	952.461409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.753	1	28.749	28.249	29.249	-0.0042572								0	0	0	0.23852	1	5059	5059		10.074	3.3508	1		+		55149	16296	31643	31644	67460	67460					-0.01672280004629556
VTHRESIMN	9	Unmodified	_VTHRESIMN_					0	0	0		ENST00000492140.1_1_1:120050081-120054424:+|nuORF;nc|ENSG00000203859|P26439-2|HSD3B2;ENST00000434856.1_1_1:120144028-120151554:+|nuORF;ENSG00000203859|ENST00000369416|HSD3B2;ENSG00000203857|ENST00000369413|HSD3B1	ENST00000492140.1_1_1:120050081-120054424:+|nuORF	ENST00000492140.1_1_1:120050081-120054424:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.2933349609375	2	543.771665	1085.52878	0.78404	0.00042634	0.48818	0.00026546	1.2722	0.0006918	543.7716233220577	34.078	0.71438	34.078	33.674	34.388	0					45	25	3	0	0	0	0.25323	1	6639	6639		10.074	3.8681	1	214660			55150	8188	31644	31645	67461	67461					-0.010565730653070204
VTHRRMSLYRV	11	Unmodified	_VTHRRMSLYRV_					0	0	0			REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.7817687988281	3	473.26635	1416.77722	0.26537	0.00012559	-0.46269	-0.00021898	-0.19732	-9.3385E-05	473.26615955094354	48.53	0.44198	48.53	48.331	48.773	0					30	15	3	0	0	0	0.32912	1	11083	11083		8.2864	4.6938	1	346640	+		55151	16907	31645	31646	67462	67462					0.08550395242173181
VTHTSLHVE	9	Unmodified	_VTHTSLHVE_					0	0	0			REV__nc|ENSG00000126746|Q8TF68-3|ZNF384	REV__nc|ENSG00000126746|Q8TF68-3|ZNF384	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.7674255371094	2	511.766906	1021.51926	0.033137	1.6958E-05	0.60099	0.00030756	0.63412	0.00032452	511.7678685556811	17.99	0.45912	17.929	17.766	18.225	-0.060431					39	16	3	0	0	0	0.31038	1	1810	1810		7.2892	0	1	64272	+		55152	15319	31646	31647	67463	67463					0.009359819208043518
VTIFIRGGNK	10	Unmodified	_VTIFIRGGNK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.2528686523438	2	552.82984	1103.64513	0.41824	0.00023122	1.418	0.00078391	1.8362	0.0010151	552.8306190082222	31.95	0.42636	31.95	31.745	32.171	0					23	14	2	0	0	0	0.25821	1	5986	5986		34.932	17.99	1	312930			55153	4923	31647	31648	67464	67464					0.09745113496887825
VTIFIRGGNK	10	Unmodified	_VTIFIRGGNK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.2551879882812	2	552.82984	1103.64513	0.36737	0.0002031	1.7563	0.00097093	2.1237	0.001174	552.8306653075324	31.879	0.57468	31.92	31.748	32.323	0.040989					26	19	2	0	0	0	0.30504	1	5959	5959		21.59	10.766	1	484980			55154	4923	31647	31648	67465	67465					0.09745113496887825
VTIFIRGGNK	10	Unmodified	_VTIFIRGGNK_					0	0	0		ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	ENSG00000150753|ENST00000280326|CCT5	ENSG00000150753|ENST00000280326|CCT5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	552.82984	1103.64513	0.5024	0.00027774	1.1695	0.00064653	1.6719	0.00092427	552.8305975552184	31.882	0.53838	31.924	31.709	32.247	0.042364	-0.0069712	-0.00026479	NaN	34.932	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	541100			55155	4923	31647	31648							0.09745113496887825
VTIFPPLL	8	Unmodified	_VTIFPPLL_					0	0	0		ENST00000367079.3_1_1:207252363-207252585:+|nuORF	ENST00000367079.3_1_1:207252363-207252585:+|nuORF	ENST00000367079.3_1_1:207252363-207252585:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.269287109375	2	450.283672	898.552791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.925	1	99.964	99.464	100.46	0.038994								0	0	0	0.37078	1	26716	26716		5.2307	0	1				55156	9722	31648	31649	67466	67466					0.09945635430653965
VTIGEELLD	9	Unmodified	_VTIGEELLD_					0	0	0			REV__ENST00000483586.5_1_1:109289335-109299406:+|nuORF	REV__ENST00000483586.5_1_1:109289335-109299406:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2954406738281	2	494.763497	987.512442	0.7666	0.00037929	1.8134	0.00089719	2.58	0.0012765	494.764359144309	48.455	0.62224	48.502	48.204	48.826	0.04752					50	22	3	0	0	0	0.22596	1	11039	11039		15.847	0	1	891920	+		55157	14921	31649	31650	67467	67467					0.01818624249574441
VTIGEREEIK	10	Unmodified	_VTIGEREEIK_					0	0	0			REV__ENSG00000013583|ENST00000014930|HEBP1	REV__ENSG00000013583|ENST00000014930|HEBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.3270874023438	2	587.327328	1172.6401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.5	1	59.488	58.988	59.988	-0.011486								0	0	0	0.3392	1	14485	14485		19.362	0.98885	1		+		55158	13447	31650	31651	67468	67468					0.060687648435987285
VTIGRLFSF	9	Unmodified	_VTIGRLFSF_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.1906127929688	2	520.300384	1038.58622	0.50775	0.00026418	0.11989	6.2377E-05	0.62764	0.00032656	520.3004940641273	72.637	1.0675	72.637	72.4	73.468	0					44	38	2	0	0	0	0.16853	1	18546	18546		31.268	0	1	114060			55159	7871	31651	31652	67469	67469					0.06846637202556849
VTIGRLFSF	9	Unmodified	_VTIGRLFSF_					0	0	0		ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF	ENSG00000196497|ENST00000354464|IPO4	ENSG00000196497|ENST00000354464|IPO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.347412109375	2	520.300384	1038.58622	0.48615	0.00025294	-0.010549	-5.4885E-06	0.4756	0.00024746	520.3003384362232	72.795	1.232	72.766	72.007	73.239	-0.029305					53	43	2	0	0	0	0.21538	1	18511	18511		20.415	0	1	133730			55160	7871	31651	31652	67470	67470					0.06846637202556849
VTIHTMLFAL	10	Unmodified	_VTIHTMLFAL_					0	0	0			REV__ENSG00000204740|ENST00000454679|MALRD1	REV__ENSG00000204740|ENST00000454679|MALRD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.3242797851562	2	573.323002	1144.63145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.26	1	101.29	100.79	101.79	0.027206								0	0	0	0.37581	1	27011	27011		3.9444	0	1		+		55161	18962	31652	31653	67471	67471					0.06492119673430352
VTIIFTLNN	9	Unmodified	_VTIIFTLNN_					0	0	0			REV__ENST00000504875.5_1_5:149456943-149457703:-|nuORF	REV__ENST00000504875.5_1_5:149456943-149457703:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2560424804688	2	517.797675	1033.5808	0.50948	0.00026381	-0.93377	-0.00048351	-0.42429	-0.0002197	517.7974799442685	48.015	0.39349	48.059	47.926	48.32	0.043324					28	14	3	0	0	0	0.24636	1	10919	10919		16.149	3.6176	1	628610	+		55162	21733	31653	31654	67472	67472					0.06534913620089355
VTIIHVTLL	9	Unmodified	_VTIIHVTLL_					0	0	0		Harlequin-int_dup205|chr5:139527356-139527823:+|1.5689742388980066|0.0536703186443687|4.87|519.0|25|1|anti-sense	Harlequin-int_dup205|chr5:139527356-139527823:+|1.5689742388980066|0.0536703186443687|4.87|519.0|25|1|anti-sense	Harlequin-int_dup205|chr5:139527356-139527823:+|1.5689742388980066|0.0536703186443687|4.87|519.0|25|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2773132324219	2	504.826235	1007.63792	0.56151	0.00028347	0.038269	1.9319E-05	0.59978	0.00030278	504.8261785254473	53.855	0.56765	53.855	53.595	54.162	0					34	20	2	0	0	0	0.22596	1	12726	12726		15.847	0	1	227130			55163	12365	31654	31655	67473	67473					0.13440380896486204
VTIKEGSQLK	10	Unmodified	_VTIKEGSQLK_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8270263671875	2	551.826963	1101.63937	0.18946	0.00010455	-0.10756	-5.9353E-05	0.081902	4.5195E-05	551.8269727405717	22.54	0.79837	22.54	22.222	23.021	0					77	27	4	0	0	0	3.4096E-05	2	3180	3129;3180		135.72	32.299	1	981620			55164	1537	31655	31656	67474;67475	67475					0.09261970194552305
VTIKEGSQLK	10	Unmodified	_VTIKEGSQLK_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8270263671875	2	551.826963	1101.63937	0.22729	0.00012542	-0.075152	-4.1471E-05	0.15214	8.3953E-05	551.82695403328	22.658	0.81214	22.57	22.296	23.108	-0.087608					83	28	4	0	0	0	1.2549E-13	2	3210	3165;3210		188.38	70.309	1	992630			55165	1537	31655	31656	67476;67477	67477					0.09261970194552305
VTIKEGSQLK	10	Unmodified	_VTIKEGSQLK_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8269653320312	2	551.826963	1101.63937	0.19105	0.00010543	-0.11244	-6.2049E-05	0.078609	4.3379E-05	551.8269355906059	22.628	0.87245	22.583	22.294	23.167	-0.044867					87	30	5	0	0	0	1.8476E-08	2	3206	3157;3206		157.49	57.733	1	986590			55166	1537	31655	31656	67478;67479	67479					0.09261970194552305
VTIKKLFIQY	10	Unmodified	_VTIKKLFIQY_					0	0	0		nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-2|DEPDC5	nc|ENSG00000100150|O75140-5|DEPDC5	nc|ENSG00000100150|O75140-5|DEPDC5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.8883666992188	2	626.886824	1251.7591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.58	1	111.59	111.09	112.09	0.01152								0	0	0	0.38166	1	29050	29050		1.4819	0	1				55167	12611	31656	31657	67480	67480					0.14328583539145257
VTILPTAPG	9	Unmodified	_VTILPTAPG_					0	0	0			REV__nc|ENSG00000102125|Q16635-9|TAFAZZIN	REV__nc|ENSG00000102125|Q16635-9|TAFAZZIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.252197265625	2	434.760561	867.506569	-0.015405	-6.6977E-06	-0.45489	-0.00019777	-0.4703	-0.00020447	434.7604949713238	71.219	0.94349	71.279	70.928	71.872	0.060783					59	33	3	0	0	0	0.068501	2	18104	18060;18104		46.021	9.7325	1	1219600	+		55168	14306	31657	31658	67481;67482	67482					0.06751570528570028
VTILPTAPG	9	Unmodified	_VTILPTAPG_					0	0	0			REV__nc|ENSG00000102125|Q16635-9|TAFAZZIN	REV__nc|ENSG00000102125|Q16635-9|TAFAZZIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.2524719238281	2	434.760561	867.506569	0.025729	1.1186E-05	-0.47396	-0.00020606	-0.44823	-0.00019487	434.760460592595	71.236	0.5964	71.211	70.943	71.54	-0.024864					42	21	3	0	0	0	0.051692	1	18090	18090		52.268	12.311	1	1265800	+		55169	14306	31657	31658	67483	67483					0.06751570528570028
VTINNIKKP	9	Unmodified	_VTINNIKKP_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.22607421875	2	513.818941	1025.62333	0.10546	5.4186E-05	-0.16796	-8.6301E-05	-0.062501	-3.2114E-05	513.8197230521082	28.486	0.48731	28.486	28.241	28.729	0					27	16	2	0	0	0	0.25622	1	4901	4901		7.2892	1.0834	1	104990	+		55170	16784	31658	31659	67484	67484					0.11154308748336916
VTIPSETI	8	Unmodified	_VTIPSETI_					0	0	0		L1PA5_dup4732|chr6:122761880-122764546:+|3.017081909363208|0.0474676809604407|5.99|503.0|30|2|sense	L1PA5_dup4732|chr6:122761880-122764546:+|3.017081909363208|0.0474676809604407|5.99|503.0|30|2|sense	L1PA5_dup4732|chr6:122761880-122764546:+|3.017081909363208|0.0474676809604407|5.99|503.0|30|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.88800048828125	2	430.242201	858.469849	-0.32596	-0.00014024	1.9899	0.00085616	1.664	0.00071592	430.24302576788716	28.178	0.39327	28.174	27.966	28.359	-0.0042572					18	13	2	0	0	0	0.33993	1	4831	4831		16.942	0	1	77365			55171	12485	31659	31660	67485	67485					0.03495273912017183
VTIRHVAF	8	Unmodified	_VTIRHVAF_					0	0	0			REV__ENSG00000280969|ENST00000629237|RPS4Y2	REV__ENSG00000280969|ENST00000629237|RPS4Y2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.7797546386719	2	471.779619	941.544686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.735	1	25.735	25.235	26.235	0								0	0	0	0.31323	1	4140	4140		26.884	1.4843	1		+		55172	15431	31660	31661	67486	67486					0.07157501233893981
VTIRHVAF	8	Unmodified	_VTIRHVAF_					0	0	0			REV__ENSG00000280969|ENST00000629237|RPS4Y2	REV__ENSG00000280969|ENST00000629237|RPS4Y2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.77935791015625	2	471.779619	941.544686	-0.044413	-2.0953E-05	-0.11707	-5.5233E-05	-0.16149	-7.6187E-05	471.77945125488515	25.665	0.86711	25.643	25.056	25.923	-0.022236					54	30	3	0	0	0	0.42371	1	4189	4189		14.838	0	1	476320	+		55173	15431	31660	31661	67487	67487					0.07157501233893981
VTIRLHPTRF	10	Unmodified	_VTIRLHPTRF_					0	0	0			REV__ENST00000532245.5_1_11:57529333-57563148:+|nuORF	REV__ENST00000532245.5_1_11:57529333-57563148:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8688354492188	2	620.369664	1238.72478	-0.13339	-8.2749E-05	-0.30419	-0.00018871	-0.43758	-0.00027146	620.3687059096924	116.18	0.038979	116.18	116.17	116.2	0					6	4	2	0	0	0	0.32132	1	30090	30090		1.4819	0	1	20143	+		55174	22030	31661	31662	67488	67488					0.11496180170865955
VTISFRIYK	9	Unmodified	_VTISFRIYK_					0	0	0		nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4;ENST00000543123.1_1_11:63449027-63517671:+|nuORF;nc|ENSG00000133318|O95197-6|RTN3;nc|ENSG00000133318|O95197-5|RTN3;nc|ENSG00000133318|O95197-3|RTN3;nc|ENSG00000133318|O95197-4|RTN3;nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3	nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000133318|O95197-3|RTN3	nc|ENSG00000115310|Q9NQC3-3|RTN4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.2924194335938	2	563.834591	1125.65463	0.44663	0.00025183	0.088144	4.9699E-05	0.53478	0.00030153	564.3363072152076	48.504	0.58831	48.504	48.077	48.665	0					28	20	2	0	0	0	0.21026	1	11145	11145		28.495	15.452	1	254170			55175	2633;3706	31662	31663	67489	67489					0.09682881782418917
VTISTCHVSA	10	Unmodified	_VTISTCHVSA_					0	0	0		nc|ENSG00000123965|A8MQ11|PMS2P5;nc|ENSG00000291154|O95744|PMS2P2;nc|ENSG00000078319|A4D2B8-3|PMS2P1;nc|ENSG00000078319|A4D2B8-2|PMS2P1;nc|ENSG00000078319|A4D2B8|PMS2P1	nc|ENSG00000123965|A8MQ11|PMS2P5	nc|ENSG00000123965|A8MQ11|PMS2P5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.80255126953125	2	509.255317	1016.49608	-0.043273	-2.2037E-05	-0.1167	-5.9432E-05	-0.15998	-8.1469E-05	509.2553898859629	28.235	0.465	28.235	27.924	28.389	0					22	15	2	0	0	0	0.30079	1	4876	4876		20.454	0	1	151680			55176	12592	31663	31664	67490	67490					-0.011507801881748492
VTITLDLRQVF	11	Unmodified	_VTITLDLRQVF_					0	0	0		ENSG00000101680|ENST00000389658|LAMA1;ENST00000579014.5_1_18:7043201-7117719:-|nuORF	ENSG00000101680|ENST00000389658|LAMA1	ENSG00000101680|ENST00000389658|LAMA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.553466796875	3	435.590605	1303.74999	0.030714	1.3379E-05	-0.28326	-0.00012338	-0.25254	-0.00011001	435.59048840293383	52.058	0.40974	52.109	51.9	52.309	0.050571					27	14	3	0	0	0	0.3333	1	12133	12133		1.3296	0.11481	1	232430			55177	1716	31664	31665	67491	67491					0.11026190182769824
VTIVMHIYK	9	Oxidation (M)	_VTIVM(Oxidation (M))HIYK_		VTIVM(1)HIYK		VTIVM(110)HIYK	0	0	1		ENST00000579289.1_1_17:56428811-56428850:-|nuORF	ENST00000579289.1_1_17:56428811-56428850:-|nuORF	ENST00000579289.1_1_17:56428811-56428850:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.314453125	2	560.315177	1118.6158	0.32849	0.00018406	-0.98294	-0.00055076	-0.65445	-0.0003667	560.3147158529323	33.418	1.1531	33.418	33.011	34.164	0					132	41	5	0	0	0	0.0019475	3	6505	6461;6505;6560		110.67	45.44	1	2448800			55178	12069	31665	31666	67492;67493;67494	67493		962			0.06123833156402725
VTIVMHIYK	9	Oxidation (M)	_VTIVM(Oxidation (M))HIYK_		VTIVM(1)HIYK		VTIVM(110)HIYK	0	0	1		ENST00000579289.1_1_17:56428811-56428850:-|nuORF	ENST00000579289.1_1_17:56428811-56428850:-|nuORF	ENST00000579289.1_1_17:56428811-56428850:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3147583007812	2	560.315177	1118.6158	0.46897	0.00026277	-0.62592	-0.00035071	-0.15694	-8.7939E-05	560.3147893081647	33.285	0.99181	33.34	33.063	34.055	0.055309					84	35	3	0	0	0	0.0019475	2	6469	6421;6469		110.67	35.746	1	2608600			55179	12069	31665	31666	67495;67496	67496		962			0.06123833156402725
VTIVMHIYK	9	Oxidation (M)	_VTIVM(Oxidation (M))HIYK_		VTIVM(1)HIYK		VTIVM(110)HIYK	0	0	1		ENST00000579289.1_1_17:56428811-56428850:-|nuORF	ENST00000579289.1_1_17:56428811-56428850:-|nuORF	ENST00000579289.1_1_17:56428811-56428850:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.3153076171875	2	560.315177	1118.6158	0.1135	6.3594E-05	-0.16216	-9.0859E-05	-0.048661	-2.7266E-05	560.3150666238303	33.306	0.99212	33.372	33.055	34.047	0.066704					86	35	3	0	0	0	0.0023784	3	6415	6415;6458;6500		107.19	32.258	1	2850100			55180	12069	31665	31666	67497;67498;67499	67497		962			0.06123833156402725
VTIVSSQLL	9	Unmodified	_VTIVSSQLL_					0	0	0			REV__ENSG00000111897|ENST00000339697|SERINC1	REV__ENSG00000111897|ENST00000339697|SERINC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.27740478515625	2	480.292225	958.569897	0.53102	0.00025505	-0.21882	-0.0001051	0.3122	0.00014995	480.29200001237604	47.729	0.35599	47.777	47.51	47.866	0.04752					21	12	2	0	0	0	0.19747	1	10796	10796		24.021	0	1	329870	+		55181	14744	31666	31667	67500	67500					0.08895511245816579
VTIVSSQLL	9	Unmodified	_VTIVSSQLL_					0	0	0			REV__ENSG00000111897|ENST00000339697|SERINC1	REV__ENSG00000111897|ENST00000339697|SERINC1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	480.292225	958.569897	0.53102	0.00025505	-0.21882	-0.0001051	0.3122	0.00014995	480.29200001237604	47.729	0.35599	47.777	47.51	47.866	0.04752	0.014026	-3.9302E-05	NaN	24.021	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329870	+		55182	14744	31666	31667							0.08895511245816579
VTIYHTYKS	9	Unmodified	_VTIYHTYKS_					0	0	0		CON__P15636	CON__P15636	CON__P15636	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2925415039062	2	556.292756	1110.57096	0.034604	1.925E-05	0.61294	0.00034097	0.64754	0.00036022	556.2928901904313	14.564	0.3733	14.459	14.308	14.681	-0.10466					21	12	2	0	0	0	0.34923	1	809	809		1.4819	0	1	57949		+	55183	218	31667	31668	67501	67501					0.02009725614720992
VTKARTRY	8	Unmodified	_VTKARTRY_					0	0	0		ENST00000403980.1_1_2:42180111-42180432:-|nuORF	ENST00000403980.1_1_2:42180111-42180432:-|nuORF	ENST00000403980.1_1_2:42180111-42180432:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.79339599609375	2	497.793258	993.571963	-0.080005	-3.9826E-05	0.37225	0.0001853	0.29225	0.00014548	497.79344191927004	12.726	0.69737	12.659	12.491	13.189	-0.067496					57	23	4	0	0	0	0.45431	1	270	270		4.3292	0	1	990840			55184	10210	31668	31669	67502	67502					0.07491984774276261
VTKEWFII	8	Unmodified	_VTKEWFII_					0	0	0		ENSG00000113269|ENST00000521389|RNF130	ENSG00000113269|ENST00000521389|RNF130	ENSG00000113269|ENST00000521389|RNF130	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2987060546875	2	518.29731	1034.58007	0.4582	0.00023748	1.2453	0.00064541	1.7035	0.0008829	518.2977093422821	58.749	0.55861	58.749	58.358	58.917	0					29	18	2	0	0	0	0.32038	1	14278	14278		28.487	2.2187	1	590140			55185	2485	31669	31670	67503	67503					0.06416118971037577
VTKEWFII	8	Unmodified	_VTKEWFII_					0	0	0		ENSG00000113269|ENST00000521389|RNF130	ENSG00000113269|ENST00000521389|RNF130	ENSG00000113269|ENST00000521389|RNF130	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2988891601562	2	518.29731	1034.58007	0.48739	0.00025261	2.2584	0.0011705	2.7458	0.0014231	518.2981861033359	58.738	0.47332	58.724	58.416	58.889	-0.014267					30	16	3	0	0	0	0.32038	1	14273	14273		28.487	2.2187	1	624060			55186	2485	31669	31670	67504	67504					0.06416118971037577
VTKGEFENL	9	Unmodified	_VTKGEFENL_					0	0	0			REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B	REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.29541015625	2	518.769114	1035.52368	0.25246	0.00013097	0.18857	9.7826E-05	0.44103	0.00022879	518.7692592495953	63.021	0.34969	63.012	62.755	63.104	-0.0085526					23	12	2	0	0	0	0.20167	1	15581	15581		22.736	0	1	543680	+		55187	15929	31670	31671	67505	67505					0.007334463437018712
VTKIGVTVL	9	Unmodified	_VTKIGVTVL_					0	0	0		ENST00000530908.5_1_21:37444388-37445177:+|nuORF;ENSG00000159228|ENST00000290349|CBR1	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.8072204589844	2	465.305136	928.595718	0.21524	0.00010015	0.2258	0.00010507	0.44104	0.00020522	465.3050746874653	55.36	0.53869	55.43	55.188	55.727	0.070885					28	19	2	0	0	0	0.17277	1	13221	13221		27.629	0.74515	1	314480			55188	5394	31671	31672	67506	67506					0.12856405488071232
VTKIGVTVL	9	Unmodified	_VTKIGVTVL_					0	0	0		ENST00000530908.5_1_21:37444388-37445177:+|nuORF;ENSG00000159228|ENST00000290349|CBR1	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	465.305136	928.595718	-0.079212	-3.6858E-05	0.34447	0.00016028	0.26526	0.00012343	465.30527167214706	55.337	0.56376	55.337	55.119	55.682	0	-0.037103	6.6522E-05	NaN	27.629	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317670			55189	5394	31671	31672							0.12856405488071232
VTKIGVTVL	9	Unmodified	_VTKIGVTVL_					0	0	0		ENST00000530908.5_1_21:37444388-37445177:+|nuORF;ENSG00000159228|ENST00000290349|CBR1	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	465.305136	928.595718	0.22564	0.00010499	0.16716	7.7783E-05	0.3928	0.00018277	465.3051249378364	55.374	0.32683	55.355	55.181	55.508	-0.019081	-0.019059	-9.8478E-05	NaN	27.629	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390910			55190	5394	31671	31672							0.12856405488071232
VTKIKNEK	8	Unmodified	_VTKIKNEK_					0	0	0			REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.7444763183594	2	480.297842	958.581131	0.19411	9.3229E-05	-0.81658	-0.0003922	-0.62247	-0.00029897	480.29737696307336	17.637	0.54222	17.577	17.33	17.872	-0.060429					25	18	2	0	0	0	0.34438	1	1769	1769		0.6015	0	1	64178	+		55191	14784	31672	31673	67507	67507					0.1001833333994
VTKIKNEK	8	Unmodified	_VTKIKNEK_					0	0	0			REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	480.297842	958.581131	0.14224	6.832E-05	-0.73329	-0.0003522	-0.59104	-0.00028388	480.29746479942435	17.522	0.37843	17.522	17.341	17.719	0	-0.024556	-5.6159E-05	NaN	0.6015	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58391	+		55192	14784	31672	31673							0.1001833333994
VTKIKNEK	8	Unmodified	_VTKIKNEK_					0	0	0			REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	480.297842	958.581131	0.050657	2.433E-05	-0.50472	-0.00024242	-0.45406	-0.00021809	480.2975321445765	17.658	0.40199	17.541	17.355	17.757	-0.11739	-0.0055174	0.0001634	NaN	0.6015	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61943	+		55193	14784	31672	31673							0.1001833333994
VTKIKNYSL	9	Unmodified	_VTKIKNYSL_					0	0	0			REV__ENSG00000122477|ENST00000370137|LRRC39	REV__ENSG00000122477|ENST00000370137|LRRC39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.2998657226562	2	533.318774	1064.623	0.30714	0.0001638	-0.49016	-0.00026141	-0.18302	-9.7607E-05	533.3183526448499	24.687	0.29348	24.631	24.486	24.78	-0.055931					11	9	2	0	0	0	0.33276	1	3804	3804		3.9444	0	1	26131	+		55194	15157	31673	31674	67508	67508					0.09326889028443475
VTKKKIQE	8	Unmodified	_VTKKKIQE_					0	0	0			REV__nc|ENSG00000107581|Q14152-2|EIF3A	REV__nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.3055419921875	2	487.305667	972.596781	0.0019119	9.3169E-07	-0.065213	-3.1779E-05	-0.063302	-3.0847E-05	487.30548360175214	12.293	0.34228	12.196	12.094	12.436	-0.096607					19	11	3	0	0	0	0.46461	1	105	105		0.79363	0	1	110330	+		55195	14557	31674	31675	67509	67509					0.10938619856983678
VTKKKKKQK	9	Unmodified	_VTKKKKKQK_					0	0	0			REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF	REV__ENST00000351842.8_1_3:49315538-49315709:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3367309570312	2	558.384783	1114.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.217	1	18.099	17.599	18.599	-0.11739								0	0	0	0.26829	1	1867	1867		0	0	1		+		55196	20165	31675	31676	67510	67510					0.20222538836083004
VTKLPPTL	8	Unmodified	_VTKLPPTL_					0	0	0			REV__nc|ENSG00000185760|Q9NR82-2|KCNQ5	REV__nc|ENSG00000185760|Q9NR82-2|KCNQ5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.780029296875	2	434.778754	867.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.722	1	38.813	38.313	39.313	0.090881								0	0	0	0.36623	1	8100	8100		7.2892	1.5288	1		+		55197	18407	31676	31677	67511	67511					0.10388447425270897
VTKQKHLHLY	10	Unmodified	_VTKQKHLHLY_					0	0	0		nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.592529296875	3	422.915423	1265.72444	0.22621	9.5668E-05	-0.23304	-9.8556E-05	-0.0068285	-2.8879E-06	422.91543213999506	44.693	0.46837	44.693	44.522	44.991	0					36	16	3	0	0	0	0.31701	1	9924	9924		10.899	2.4547	1	342480			55198	5267	31677	31678	67512	67512					0.10220760451056776
VTKQKHLHLY	10	Unmodified	_VTKQKHLHLY_					0	0	0		nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.59259033203125	3	422.915423	1265.72444	0.12633	5.3426E-05	-0.28645	-0.00012114	-0.16012	-6.7716E-05	422.9152567922134	44.491	0.52568	44.566	44.333	44.859	0.075047					41	18	3	0	0	0	0.31701	1	9869	9869		10.899	4.2755	1	293720			55199	5267	31677	31678	67513	67513					0.10220760451056776
VTKRKDLLDH	10	Unmodified	_VTKRKDLLDH_					0	0	0			REV__ENSG00000197584|ENST00000452583|KCNMB2	REV__ENSG00000197584|ENST00000452583|KCNMB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.1741943359375	3	408.906816	1223.69862	-0.13994	-5.7222E-05	1.2038	0.00049224	1.0639	0.00043502	409.2417281313816	17.156	0.23638	17.039	16.965	17.201	-0.11739					17	8	3	0	0	0	0.32082	1	1568	1568		3.3196	0.68841	1	35742	+		55200	18748	31678	31679	67514	67514					0.09571866208739266
VTLASKQTF	9	Unmodified	_VTLASKQTF_					0	0	0			REV__ENSG00000196967|ENST00000292841|ZNF585A;REV__ENSG00000245680|ENST00000532828|ZNF585B	REV__ENSG00000196967|ENST00000292841|ZNF585A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3343200683594	2	497.782025	993.549496	0.54748	0.00027253	-1.2296	-0.0006121	-0.68216	-0.00033957	497.78160583090266	67.696	0.22615	67.774	67.576	67.802	0.078049					10	7	2	0	0	0	0.25066	1	16984	16984		11.64	0	1	85780	+		55201	18701;19207	31679	31680	67515	67515					0.05246340585995313
VTLDQVLLR	9	Unmodified	_VTLDQVLLR_					0	0	0		nc|ENSG00000136877|Q05932-3|FPGS;nc|ENSG00000136877|Q05932-2|FPGS;nc|ENSG00000136877|Q05932-4|FPGS;ENSG00000136877|ENST00000373247|FPGS;ENST00000467826.5_1_9:130570554-130576503:+|nuORF	nc|ENSG00000136877|Q05932-3|FPGS	nc|ENSG00000136877|Q05932-3|FPGS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2813110351562	2	528.824224	1055.63389	-0.14629	-7.7363E-05	-0.50278	-0.00026588	-0.64907	-0.00034324	528.8246235893546	59.887	0.55125	59.982	59.741	60.292	0.095089					27	19	2	0	0	0	0.19686	1	14617	14617		31.268	0	1	288720			55202	4009	31680	31681	67516	67516					0.10830291402749026
VTLEDGYIEL	10	Unmodified	_VTLEDGYIEL_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.2932739257812	2	576.295162	1150.57577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.62	1	111.6	111.1	112.1	-0.013939								0	0	0	0.36922	1	29037	29037		6.7232	0.51738	1				55203	679	31681	31682	67517	67517					0.006505649668270053
VTLEHPLFV	9	Unmodified	_VTLEHPLFV_					0	0	0		DNMT3A|p.E616Dfs*35|1|0.15|ENSG00000119772|chr2:25244158-25244158|T/-|frameshift_variant;nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;DNMT3A|p.S839Pfs*2|1|0.35|ENSG00000119772|chr2:25235789-25235789|A/-|frameshift_variant;ENSG00000119772|ENST00000321117|DNMT3A	DNMT3A|p.E616Dfs*35|1|0.15|ENSG00000119772|chr2:25244158-25244158|T/-|frameshift_variant	DNMT3A|p.E616Dfs*35|1|0.15|ENSG00000119772|chr2:25244158-25244158|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2810668945312	2	527.800217	1053.58588	0.067042	3.5385E-05	-1.0018	-0.00052877	-0.9348	-0.00049339	527.800007941144	60.168	0.38226	60.168	59.949	60.331	0					20	13	2	0	0	0	0.11486	1	14704	14704		48.346	25.197	1	379900			55204	271	31682	31683	67518	67518					0.06123217482695509
VTLEHPLFV	9	Unmodified	_VTLEHPLFV_					0	0	0		DNMT3A|p.E616Dfs*35|1|0.15|ENSG00000119772|chr2:25244158-25244158|T/-|frameshift_variant;nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;DNMT3A|p.S839Pfs*2|1|0.35|ENSG00000119772|chr2:25235789-25235789|A/-|frameshift_variant;ENSG00000119772|ENST00000321117|DNMT3A	DNMT3A|p.E616Dfs*35|1|0.15|ENSG00000119772|chr2:25244158-25244158|T/-|frameshift_variant	DNMT3A|p.E616Dfs*35|1|0.15|ENSG00000119772|chr2:25244158-25244158|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2813110351562	2	527.800217	1053.58588	-0.30665	-0.00016185	-0.47268	-0.00024948	-0.77932	-0.00041133	527.8001440886683	60.021	0.40976	60.116	59.932	60.341	0.095093					20	14	2	0	0	0	0.14099	1	14617	14617		42.095	11.87	1	632780			55205	271	31682	31683	67519	67519					0.06123217482695509
VTLEHPLFV	9	Unmodified	_VTLEHPLFV_					0	0	0		DNMT3A|p.E616Dfs*35|1|0.15|ENSG00000119772|chr2:25244158-25244158|T/-|frameshift_variant;nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;DNMT3A|p.S839Pfs*2|1|0.35|ENSG00000119772|chr2:25235789-25235789|A/-|frameshift_variant;ENSG00000119772|ENST00000321117|DNMT3A	DNMT3A|p.E616Dfs*35|1|0.15|ENSG00000119772|chr2:25244158-25244158|T/-|frameshift_variant	DNMT3A|p.E616Dfs*35|1|0.15|ENSG00000119772|chr2:25244158-25244158|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2811889648438	2	527.800217	1053.58588	0.27889	0.0001472	-0.35413	-0.00018691	-0.075237	-3.971E-05	527.8002582952482	60.112	0.40938	60.1	59.915	60.324	-0.011486					23	14	2	0	0	0	0.1854	1	14711	14711		32.305	6.9062	1	394390			55206	271	31682	31683	67520	67520					0.06123217482695509
VTLELAVYK	9	Unmodified	_VTLELAVYK_					0	0	0		nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP;nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3079833984375	2	518.307875	1034.6012	0.63027	0.00032667	-0.050703	-2.628E-05	0.57957	0.00030039	518.3076889452276	53.893	0.95717	53.893	53.568	54.526	0					91	34	4	0	0	0	0.0016712	1	12790	12790		114.2	60.369	1	4286700			55207	8473;12955	31683	31684	67521	67521					0.08528084279896575
VTLELAVYK	9	Unmodified	_VTLELAVYK_					0	0	0		nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP;nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3079833984375	2	518.307875	1034.6012	0.30845	0.00015987	0.34333	0.00017795	0.65177	0.00033782	518.3078689835753	53.849	1.05	53.905	53.585	54.635	0.056255					94	39	3	0	0	0	0.0073667	1	12722	12722		96.367	48.618	1	4274500			55208	8473;12955	31683	31684	67522	67522					0.08528084279896575
VTLELAVYK	9	Unmodified	_VTLELAVYK_					0	0	0		nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP;nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP;nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-2|TAPBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3079833984375	2	518.307875	1034.6012	0.43634	0.00022616	0.21667	0.0001123	0.65301	0.00033846	518.3077774570343	54.01	0.86636	53.994	53.709	54.575	-0.015923					69	30	3	0	0	0	0.0073667	1	12776	12776		96.367	56.417	1	2528500			55209	8473;12955	31683	31684	67523	67523					0.08528084279896575
VTLFHVIR	8	Unmodified	_VTLFHVIR_					0	0	0		nc|ENSG00000130558|Q99784-5|OLFM1;nc|ENSG00000130558|Q99784-3|OLFM1;ENSG00000130558|ENST00000371793|OLFM1	nc|ENSG00000130558|Q99784-5|OLFM1	nc|ENSG00000130558|Q99784-5|OLFM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.8013916015625	2	492.803094	983.591636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.801	1	28.802	28.302	29.302	0.0004673								0	0	0	0.35663	1	5068	5068		11.64	1.4897	1				55210	3485	31684	31685	67524	67524					0.09918360785047753
VTLFLLQLK	9	Unmodified	_VTLFLLQLK_					0	0	0		ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2955322265625	2	537.84971	1073.68487	0.48462	0.00026065	-0.26208	-0.00014096	0.22254	0.00011969	537.8495681166312	76.629	0.35699	76.629	76.501	76.858	0					21	12	2	0	0	0	0.17696	1	19722	19722		36.506	14.969	1	136320			55211	5821	31685	31686	67525	67525					0.15097240447607874
VTLFLLQLK	9	Unmodified	_VTLFLLQLK_					0	0	0		ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	537.84971	1073.68487	0.21838	0.00011745	-0.045471	-2.4456E-05	0.17291	9.2998E-05	537.8497244141092	76.624	0.43764	76.678	76.423	76.86	0.053421	0.029692	0.00020473	NaN	29.841	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118810			55212	5821	31685	31686							0.15097240447607874
VTLFLLQLK	9	Unmodified	_VTLFLLQLK_					0	0	0		ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	ENSG00000164294|ENST00000503787|GPX8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	537.84971	1073.68487	0.67687	0.00036406	-0.49033	-0.00026373	0.18654	0.00010033	537.8494415542393	76.669	0.34307	76.637	76.509	76.852	-0.031487	-0.010753	-0.00027381	NaN	29.841	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136300			55213	5821	31685	31686							0.15097240447607874
VTLGDVWIL	9	Unmodified	_VTLGDVWIL_					0	0	0		OTOP3|p.A285Sfs*15|1|0.13|ENSG00000182938|chr17:74946705-74946706|-/A|frameshift_variant;ENSG00000182938|ENST00000328801|OTOP3;nc|ENSG00000182938|Q7RTS5|OTOP3	OTOP3|p.A285Sfs*15|1|0.13|ENSG00000182938|chr17:74946705-74946706|-/A|frameshift_variant	OTOP3|p.A285Sfs*15|1|0.13|ENSG00000182938|chr17:74946705-74946706|-/A|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.3046875	2	508.294768	1014.57498	0.33245	0.00016898	-2.1058	-0.0010704	-1.7734	-0.00090139	508.29324784194847	49.777	0.70158	49.821	49.566	50.268	0.044891					50	26	4	0	0	0	0.20651	1	11615	11615		20.454	8.213	1	564140			55214	7335	31686	31687	67526	67526					0.06827815108431423
VTLGDVWIL	9	Unmodified	_VTLGDVWIL_					0	0	0		OTOP3|p.A285Sfs*15|1|0.13|ENSG00000182938|chr17:74946705-74946706|-/A|frameshift_variant;ENSG00000182938|ENST00000328801|OTOP3;nc|ENSG00000182938|Q7RTS5|OTOP3	OTOP3|p.A285Sfs*15|1|0.13|ENSG00000182938|chr17:74946705-74946706|-/A|frameshift_variant	OTOP3|p.A285Sfs*15|1|0.13|ENSG00000182938|chr17:74946705-74946706|-/A|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	508.294768	1014.57498	0.39633	0.00020145	-1.8217	-0.00092598	-1.4254	-0.00072453	508.2930015820974	49.763	1.1494	49.784	49.591	50.74	0.020691	-0.018941	0.00015122	NaN	32.305	70	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	560380			55215	7335	31686	31687							0.06827815108431423
VTLGGERREAR	11	Unmodified	_VTLGGERREAR_					0	0	0		ENST00000587992.1_1_19:10445574-10446063:-|nuORF;ENSG00000076662|ENST00000160262|ICAM3	ENST00000587992.1_1_19:10445574-10446063:-|nuORF	ENST00000587992.1_1_19:10445574-10446063:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3479614257812	2	622.346917	1242.67928	0.37438	0.000233	0.4153	0.00025846	0.78968	0.00049145	622.347035965394	85.773	3.0068	85.764	84.921	87.928	-0.0090103					276	128	4	0	0	0	0.42762	1	22875	22875		7.609	1.4032	1	1118300			55216	1068	31687	31688	67527	67527					0.06764909917842488
VTLGMEDPSP	10	Unmodified	_VTLGMEDPSP_					0	0	0		ENST00000295317.3_1_2:101893683-101893731:-|nuORF	ENST00000295317.3_1_2:101893683-101893731:-|nuORF	ENST00000295317.3_1_2:101893683-101893731:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2472534179688	2	523.247157	1044.47976	0.39918	0.00020887	0.094597	4.9498E-05	0.49378	0.00025837	523.2470106291661	24.036	0.71335	23.963	23.646	24.359	-0.072559					52	23	3	0	0	0	0.33817	1	3607	3607		14.838	0	1	230570			55217	9171	31688	31689	67528	67528					-0.04069906144923152
VTLGPIPF	8	Unmodified	_VTLGPIPF_					0	0	0			REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2521057128906	2	422.252372	842.49019	0.022912	9.6748E-06	-0.080481	-3.3983E-05	-0.057568	-2.4308E-05	422.2521449553962	82.162	0.76014	82.162	81.919	82.679	0					53	27	3	0	0	0	0.16192	2	21437	21437;21506		49.669	14.107	1	553000	+		55218	21099	31689	31690	67529;67530	67529					0.06264489362467884
VTLGPIPF	8	Unmodified	_VTLGPIPF_					0	0	0			REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.25225830078125	2	422.252372	842.49019	-0.10036	-4.2376E-05	0.01268	5.354E-06	-0.087677	-3.7022E-05	422.2522772258373	82.025	0.63699	82.094	81.931	82.568	0.068993					48	26	2	0	0	0	0.10409	2	21389	21389;21445		59.795	9.6204	1	653300	+		55219	21099	31689	31690	67531;67532	67531					0.06264489362467884
VTLGPIPF	8	Unmodified	_VTLGPIPF_					0	0	0			REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.25213623046875	2	422.252372	842.49019	0.10759	4.5432E-05	-0.11721	-4.9493E-05	-0.0096186	-4.0615E-06	422.2522462110631	82.294	0.60899	82.273	81.987	82.596	-0.020584					51	23	3	0	0	0	0.12267	2	21498	21432;21498		56.541	9.6204	1	601860	+		55220	21099	31689	31690	67533;67534	67534					0.06264489362467884
VTLGPIPF	8	Unmodified	_VTLGPIPF_					0	0	0			REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	422.252372	842.49019	0.022912	9.6748E-06	-0.080481	-3.3983E-05	-0.057568	-2.4308E-05	422.2521449553962	82.162	0.76014	82.162	81.919	82.679	0	-0.014587	-2.2698E-05	NaN	59.795	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	553000	+		55221	21099	31689	31690							0.06264489362467884
VTLGPIPF	8	Unmodified	_VTLGPIPF_					0	0	0			REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	422.252372	842.49019	-0.10036	-4.2376E-05	0.01268	5.354E-06	-0.087677	-3.7022E-05	422.2522772258373	82.025	0.63699	82.094	81.931	82.568	0.068993	-0.082376	5.5977E-05	NaN	59.795	48	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	653300	+		55222	21099	31689	31690							0.06264489362467884
VTLGPIPF	8	Unmodified	_VTLGPIPF_					0	0	0			REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	422.252372	842.49019	0.10759	4.5432E-05	-0.11721	-4.9493E-05	-0.0096186	-4.0615E-06	422.2522462110631	82.294	0.60899	82.273	81.987	82.596	-0.020584	0.096963	-5.3717E-05	NaN	59.795	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	601860	+		55223	21099	31689	31690							0.06264489362467884
VTLGPIPFL	9	Unmodified	_VTLGPIPFL_					0	0	0			REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	REV__ENST00000448892.1_1_3:194208670-194208955:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.2955017089844	2	478.794404	955.574254	0.3823	0.00018305	-0.76879	-0.00036809	-0.38648	-0.00018505	478.7940906716451	82.953	0.57677	83.026	82.823	83.4	0.073097					35	21	2	0	0	0	0.24581	1	21689	21689		16.942	1.0951	1	199340	+		55224	21099	31690	31691	67535	67535					0.09469020459368949
VTLGYVINV	9	Unmodified	_VTLGYVINV_					0	0	0			REV__ENSG00000181609|ENST00000322641|OR52D1	REV__ENSG00000181609|ENST00000322641|OR52D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.8133239746094	2	489.286943	976.559333	0.56356	0.00027574	0.32383	0.00015845	0.8874	0.00043419	489.2870000095596	48.048	0.50959	48.048	47.908	48.417	0					29	17	2	0	0	0	0.1854	1	11019	11019		19.257	0	1	900730	+		55225	18156	31691	31692	67536	67536					0.07011528591374372
VTLHGTEL	8	Unmodified	_VTLHGTEL_					0	0	0		ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.2515563964844	2	435.239993	868.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.009	1	72.066	71.566	72.566	0.056572								0	0	0	0.35014	1	18327	18327		14.582	0	1				55226	6282	31692	31693	67537	67537					0.025938094890989305
VTLHYKVN	8	Unmodified	_VTLHYKVN_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.8054504394531	2	487.276909	972.539266	0.29084	0.00014172	-0.29243	-0.00014249	-0.0015889	-7.7423E-07	487.2766515586752	62.707	0.66257	62.698	62.413	63.076	-0.0085526					36	24	2	0	0	0	0.31617	1	15488	15488		26.884	16.06	1	285590			55227	8060	31693	31694	67538	67538					0.0518977765142381
VTLKEKIHKGI	11	Unmodified	_VTLKEKIHKGI_					0	0	0		ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.57489013671875	3	422.602845	1264.78671	-0.11192	-4.7299E-05	-0.091219	-3.855E-05	-0.20314	-8.5849E-05	422.60264938934006	19.404	0.61024	19.288	19.031	19.642	-0.11592					35	20	3	0	0	0	0.33236	1	2208	2208		4.4062	0	1	60005			55228	6991	31694	31695	67539	67539					0.16490486799352766
VTLKEKIHKGI	11	Unmodified	_VTLKEKIHKGI_					0	0	0		ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.57489013671875	3	422.602845	1264.78671	-0.046792	-1.9774E-05	-0.313	-0.00013227	-0.35979	-0.00015205	422.6026145754942	19.403	0.52232	19.347	19.048	19.571	-0.055693					26	17	2	0	0	0	0.33236	1	2184	2184		4.4062	0	1	72278			55229	6991	31694	31695	67540	67540					0.16490486799352766
VTLKPRSVL	9	Unmodified	_VTLKPRSVL_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000492773.5_1_3:183859720-183860594:+|nuORF;ENST00000491144.5_1_3:183857994-183862728:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.243408203125	2	506.829309	1011.64407	-0.91514	-0.00046382	0.59482	0.00030147	-0.32032	-0.00016235	506.82953334350367	34.694	0.55431	34.694	34.362	34.917	0					33	19	3	0	0	0	0.23784	1	6847	6847		19.257	0	1	165910			55230	4634	31695	31696	67541	67541					0.1387089912798274
VTLKPRSVL	9	Unmodified	_VTLKPRSVL_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000492773.5_1_3:183859720-183860594:+|nuORF;ENST00000491144.5_1_3:183857994-183862728:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.2435302734375	2	506.829309	1011.64407	-0.31796	-0.00016115	-0.65571	-0.00033233	-0.97367	-0.00049349	506.8289113588442	34.573	0.64497	34.65	34.192	34.837	0.077377					39	22	3	0	0	0	0.24688	1	6785	6785		14.838	0	1	151380			55231	4634	31695	31696	67542	67542					0.1387089912798274
VTLLHFLQEY	10	Unmodified	_VTLLHFLQEY_					0	0	0		nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9	nc|ENSG00000142002|Q86TI2|DPP9	nc|ENSG00000142002|Q86TI2|DPP9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5641174316406	3	421.564168	1261.67067	-0.22975	-9.6853E-05	0.18461	7.7824E-05	-0.045139	-1.9029E-05	421.5643027226184	23.445	0.57176	23.445	23.197	23.769	0					46	19	3	0	0	0	0.38745	1	3454	3454		5.7834	0	1	162500			55232	4419	31696	31697	67543	67543					0.05030543228690476
VTLLVMSLIF	10	Unmodified	_VTLLVMSLIF_					0	0	0		ENST00000523427.1_1_8:128864343-128902860:+|nuORF	ENST00000523427.1_1_8:128864343-128902860:+|nuORF	ENST00000523427.1_1_8:128864343-128902860:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8030395507812	2	568.343403	1134.67225	0.47138	0.0002679	0.28034	0.00015933	0.75171	0.00042723	568.343412635673	66.358	0.38068	66.442	66.164	66.544	0.083832					24	13	3	0	0	0	0.31267	1	16595	16595		14.838	0	1	768000			55233	11511	31697	31698	67544	67544					0.11030460993060842
VTLNRATLFLQ	11	Unmodified	_VTLNRATLFLQ_					0	0	0			REV__ADGRE3|p.H443Q|1|0.33|ENSG00000131355|chr19:14638260-14638260|G/T|missense_variant	REV__ADGRE3|p.H443Q|1|0.33|ENSG00000131355|chr19:14638260-14638260|G/T|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.376220703125	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.04	1	95.04	94.54	95.54	0								0	0	0	0.37382	1	25366	25366		2.9952	0	1		+		55234	13083	31698	31699	67545	67545					0.10829323385610223
VTLNRATLFLY	11	Unmodified	_VTLNRATLFLY_					0	0	0			REV__ENST00000360222.8_1_19:14854584-14867061:-|nuORF	REV__ENST00000360222.8_1_19:14854584-14867061:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.8945617675781	3	437.587084	1309.73942	0.06671	2.9191E-05	2.3031	0.0010078	2.3699	0.001037	437.58810237829283	52.108	0.35611	52.158	51.926	52.282	0.050575					20	12	2	0	0	0	0.3287	1	12203	12203		12.228	2.4633	1	280120	+		55235	15343	31699	31700	67546	67546					0.09694207528377774
VTLPVGPWHAP	11	Unmodified	_VTLPVGPWHAP_					0	0	0		ENST00000360862.9_2_16:3534964-3535998:+|nuORF;ENST00000407558.8_1_16:3534861-3535998:+|nuORF	ENST00000360862.9_2_16:3534964-3535998:+|nuORF	ENST00000360862.9_2_16:3534964-3535998:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.322021484375	2	587.324391	1172.63423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.725	1	59.714	59.214	60.214	-0.011486								0	0	0	0.27815	1	14553	14553		24.021	1.3625	1				55236	9684	31700	31701	67547	67547					0.05481711122615707
VTLPWLSFV	9	Unmodified	_VTLPWLSFV_					0	0	0			REV__ENSG00000104290|ENST00000240093|FZD3	REV__ENSG00000104290|ENST00000240093|FZD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3218994140625	2	531.305136	1060.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.709	1	68.689	68.189	69.189	-0.019157								0	0	0	0.22065	1	17312	17312		15.847	3.3156	1		+		55237	14401	31701	31702	67548	67548					0.06784405488087941
VTLQFQLF	8	Unmodified	_VTLQFQLF_					0	0	0			REV__nc|ENSG00000058668|P23634-5|ATP2B4;REV__nc|ENSG00000157087|Q01814-4|ATP2B2;REV__nc|ENSG00000067842|Q16720-6|ATP2B3;REV__nc|ENSG00000070961|P20020-6|ATP2B1	REV__nc|ENSG00000070961|P20020-6|ATP2B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3161315917969	2	498.28166	994.548768	0.38365	0.00019117	0.19675	9.8037E-05	0.5804	0.0002892	498.28166679777735	70.215	0.83755	70.281	69.967	70.805	0.066048					89	29	4	0	0	0	0.3366	1	17710	17710		12.532	3.1841	1	1291000	+		55238	22895;13609;16770;22892	31702	31703	67549	67549					0.05127545936943534
VTLQLLKP	8	Unmodified	_VTLQLLKP_					0	0	0		ENST00000344120.4_1_5:141699332-141704471:-|nuORF	ENST00000344120.4_1_5:141699332-141704471:-|nuORF	ENST00000344120.4_1_5:141699332-141704471:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.30084228515625	2	456.299853	910.585153	-0.13341	-6.0875E-05	1.9241	0.00087795	1.7907	0.00081707	456.3004948661613	30.081	0.6891	30.108	29.759	30.448	0.027159					38	23	2	0	0	0	0.34408	1	5403	5403		2.3027	0	1	157250			55239	9553	31703	31704	67550	67550					0.1262842283366581
VTLQPHDVV	9	Unmodified	_VTLQPHDVV_					0	0	0			REV__ENSG00000204186|ENST00000374423|ZDBF2	REV__ENSG00000204186|ENST00000374423|ZDBF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2800598144531	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.15	1	92.15	91.65	92.65	0								0	0	0	0.23367	1	24498	24498		11.64	0	1		+		55240	18925	31704	31705	67551	67551					0.04173456443231771
VTLQPHDVV	9	Unmodified	_VTLQPHDVV_					0	0	0			REV__ENSG00000204186|ENST00000374423|ZDBF2	REV__ENSG00000204186|ENST00000374423|ZDBF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2803955078125	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.144	1	92.233	91.733	92.733	0.089195								0	0	0	0.23367	1	24490	24490		11.64	3.047	1		+		55241	18925	31704	31705	67552	67552					0.04173456443231771
VTLQPHDVV	9	Unmodified	_VTLQPHDVV_					0	0	0			REV__ENSG00000204186|ENST00000374423|ZDBF2	REV__ENSG00000204186|ENST00000374423|ZDBF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2804870605469	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.181	1	92.181	91.681	92.681	0.00046539								0	0	0	0.23367	1	24501	24501		11.64	0	1		+		55242	18925	31704	31705	67553	67553					0.04173456443231771
VTLQQFWT	8	Unmodified	_VTLQQFWT_					0	0	0		ENST00000295314.8_1_1:151144812-151146031:-|nuORF	ENST00000295314.8_1_1:151144812-151146031:-|nuORF	ENST00000295314.8_1_1:151144812-151146031:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.7891845703125	2	511.768917	1021.52328	0.57062	0.00029203	-1.2735	-0.00065173	-0.70286	-0.0003597	512.2690529011026	54.098	0.278	54.098	53.884	54.162	0					11	9	2	0	0	0	0.34039	1	12759	12759		10.824	1.4765	1	163250			55243	9170	31705	31706	67554	67554					0.013380714145228012
VTLQQFWT	8	Unmodified	_VTLQQFWT_					0	0	0		ENST00000295314.8_1_1:151144812-151146031:-|nuORF	ENST00000295314.8_1_1:151144812-151146031:-|nuORF	ENST00000295314.8_1_1:151144812-151146031:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.7891845703125	2	511.768917	1021.52328	0.56749	0.00029042	4.0993	0.0020979	4.6668	0.0023883	511.77007434142774	53.899	0.14024	53.899	53.834	53.974	0					5	4	2	0	0	0	0.34039	1	12759	12759		10.824	1.4765	1	54028			55244	9170	31705	31706	67555	67555					0.013380714145228012
VTLRCKPIS	9	Unmodified	_VTLRCKPIS_					0	0	0		nc|ENSG00000276953|A0A0B4J2E0|TRBV12-4;nc|ENSG00000274752|P01733|TRBV12-3	nc|ENSG00000276953|A0A0B4J2E0|TRBV12-4	nc|ENSG00000276953|A0A0B4J2E0|TRBV12-4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8102722167969	2	508.799694	1015.58484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.304	1	64.397	63.897	64.897	0.09288								0	0	0	0.22065	1	15969	15969		15.847	3.3156	1				55245	12996	31706	31707	67556	67556					0.07766679842154645
VTLREPIDL	9	Unmodified	_VTLREPIDL_					0	0	0			REV__ENSG00000181291|ENST00000631683|TMEM132E	REV__ENSG00000181291|ENST00000631683|TMEM132E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3082275390625	2	528.308406	1054.60226	0.46189	0.00024402	-0.70296	-0.00037138	-0.24107	-0.00012736	528.307886057848	62.762	0.61434	62.754	62.49	63.104	-0.0085526					52	22	3	0	0	0	0.079752	1	15517	15517		41.84	3.2249	1	533100	+		55246	18142	31707	31708	67557	67557					0.07714298648807016
VTLRSKHSFA	10	Unmodified	_VTLRSKHSFA_					0	0	0			REV__ENSG00000227124|ENST00000652011|ZNF717	REV__ENSG00000227124|ENST00000652011|ZNF717	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.8092651367188	2	573.324922	1144.63529	0.61963	0.00035525	2.7518	0.0015777	3.3714	0.0019329	573.326201862554	45.759	0.44381	45.759	45.53	45.974	0					25	15	3	0	0	0	0.31847	1	10208	10208		6.7232	0.51738	1	239080	+		55247	19123	31708	31709	67558	67558					0.06875925491522139
VTLSDEGFYEC	11	Unmodified	_VTLSDEGFYEC_					0	0	0		HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;HMCN1|p.A5600Gfs*20|1|0.2|ENSG00000143341|chr1:186189767-186189768|-/G|frameshift_variant;ENSG00000143341|ENST00000271588|HMCN1;HMCN1|p.T786Ifs*25|1|0.25|ENSG00000143341|chr1:185970479-185970479|C/-|frameshift_variant;HMCN1|p.S2153Lfs*7|1|0.14|ENSG00000143341|chr1:186045841-186045841|C/-|frameshift_variant;HMCN1|p.L2284Cfs*9|1|0.25|ENSG00000143341|chr1:186053973-186053973|T/-|frameshift_variant	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5148620605469	3	421.513033	1261.51727	0.151	6.3647E-05	3.6774	0.0015501	3.8284	0.0016137	421.5148914574943	26.448	0.71009	26.426	26.158	26.869	-0.022238					56	24	3	0	0	0	0.329	1	4371	4371		4.7159	0.30977	1	223030			55248	4502	31709	31710	67559	67559					-0.10302859669945974
VTLTHARRATL	11	Unmodified	_VTLTHARRATL_					0	0	0			REV__ENST00000525059.1_1_11:451482-460289:+|nuORF	REV__ENST00000525059.1_1_11:451482-460289:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8692016601562	2	619.870028	1237.7255	0.16663	0.00010329	-0.67874	-0.00042073	-0.5121	-0.00031744	619.8689631731354	92.921	1.0228	92.921	92.557	93.58	0					123	87	2	0	0	0	0.46475	3	24830	24652;24784;24830		2.7352	1.3295	1	134500	+		55249	21945	31710	31711	67560;67561;67562	67562					0.11614974819917734
VTLTHARRATL	11	Unmodified	_VTLTHARRATL_					0	0	0			REV__ENST00000525059.1_1_11:451482-460289:+|nuORF	REV__ENST00000525059.1_1_11:451482-460289:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8692016601562	2	619.870028	1237.7255	0.34657	0.00021483	-0.44858	-0.00027806	-0.10201	-6.323E-05	619.8690821493483	92.993	0.72929	92.993	92.509	93.238	0.00046539					92	60	2	0	0	0	0.46475	1	24788	24788		2.7352	1.2533	1	203910	+		55250	21945	31710	31711	67563	67563					0.11614974819917734
VTLTQKII	8	Unmodified	_VTLTQKII_					0	0	0		nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENSG00000167716|ENST00000409644|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-2|WDR81	nc|ENSG00000167716|Q562E7-2|WDR81	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.3049621582031	2	458.29731	914.580068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.945	1	76.913	76.413	77.413	-0.031334								0	0	0	0.36336	1	19825	19825		8.5933	0	1				55251	6205	31711	31712	67564	67564					0.11936118971038923
VTLVFPIL	8	Unmodified	_VTLVFPIL_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.9327087402344	2	451.291497	900.568441	0.351	0.0001584	-0.71038	-0.00032059	-0.35938	-0.00016218	451.290898010792	92.655	0.4763	92.656	92.441	92.917	0.00047302					42	31	2	0	0	0	0.3225	1	24584	24584		10.183	0	1	61093	+		55252	16232	31712	31713	67565	67565					0.11417921947713694
VTLYWYRQTL	10	Unmodified	_VTLYWYRQTL_					0	0	0		nc|ENSG00000253409|A0A1B0GX95|TRBV7-4	nc|ENSG00000253409|A0A1B0GX95|TRBV7-4	nc|ENSG00000253409|A0A1B0GX95|TRBV7-4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	448.561279296875	3	448.243317	1341.70812	-0.017244	-7.7295E-06	-0.66936	-0.00030004	-0.68661	-0.00030777	448.2432425551987	18.148	0.39991	18.031	17.784	18.184	-0.11739					17	13	2	0	0	0	0.32148	1	1824	1824		1.4551	0.24029	1	44297			55253	12977	31713	31714	67566	67566					0.05093634494255639
VTMAIVQAR	9	Unmodified	_VTMAIVQAR_					0	0	0		nc|ENSG00000014914|A4FU01-4|MTMR11;ENSG00000014914|ENST00000439741|MTMR11;ENST00000479272.1_1_1:149906082-149907243:-|nuORF;nc|ENSG00000014914|A4FU01-3|MTMR11;ENST00000466496.5_1_1:149902724-149908701:-|nuORF;nc|ENSG00000014914|A4FU01-2|MTMR11;ENST00000492824.5_1_1:149905714-149908540:-|nuORF;nc|ENSG00000014914|A4FU01-5|MTMR11;ENST00000482343.5_1_1:149902724-149908540:-|nuORF;nc|ENSG00000014914|A4FU01-6|MTMR11	nc|ENSG00000014914|A4FU01-4|MTMR11	nc|ENSG00000014914|A4FU01-4|MTMR11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7642517089844	2	494.784044	987.553536	0.51404	0.00025434	-2.7501	-0.0013607	-2.2361	-0.0011064	494.78278843633007	48.774	0.99239	48.774	48.358	49.351	0					56	35	2	0	0	0	0.22596	1	11076	11076		15.847	0	1	783740			55254	476	31714	31715	67567	67567					0.0592610680805592
VTMETAYSP	9	Unmodified	_VTMETAYSP_					0	0	0		nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF	nc|ENSG00000041515|Q9Y6X6-3|MYO16	nc|ENSG00000041515|Q9Y6X6-3|MYO16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2428283691406	2	499.7286	997.442648	0.58619	0.00029293	-0.82757	-0.00041356	-0.24139	-0.00012063	499.7282155926051	54.545	0.48592	54.529	54.31	54.796	-0.015923					17	16	2	0	0	0	0.2451	1	13001	13001		10.824	0	1	218770			55255	606	31715	31716	67568	67568					-0.056175776907025465
VTMIIAVCIL	10	Oxidation (M)	_VTM(Oxidation (M))IIAVCIL_		VTM(1)IIAVCIL		VTM(48)IIAVCIL	0	0	1		ENST00000523831.1_1_8:101513253-101513298:+|nuORF	ENST00000523831.1_1_8:101513253-101513298:+|nuORF	ENST00000523831.1_1_8:101513253-101513298:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.3134155273438	2	546.313789	1090.61302	0.72664	0.00039698	-0.70818	-0.00038689	0.018462	1.0086E-05	546.3133672528969	37.64	1.2803	37.64	37.369	38.649	0					134	45	5	0	0	0	0.09872	1	7753	7753		48.346	48.346	1	12345000			55256	11516	31716	31717	67569	67569		958			0.0713424170721737
VTMKEILLK	9	Oxidation (M)	_VTM(Oxidation (M))KEILLK_		VTM(1)KEILLK		VTM(44)KEILLK	0	0	1		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-6|MAPKAP1;MAPKAP1|p.V374Tfs*5|1|0.11|ENSG00000119487|chr9:125484530-125484531|CT/-|frameshift_variant	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.8309936523438	2	545.83066	1089.64677	0.59286	0.0003236	-0.015997	-8.7317E-06	0.57686	0.00031487	545.8306247299726	29.006	0.79087	29.006	28.76	29.551	0					61	28	3	0	0	0	0.072885	1	5120	5120		44.392	44.392	1	387780			55257	2882	31717	31718	67570	67570		363			0.10552986470611359
VTMKEILLK	9	Oxidation (M)	_VTM(Oxidation (M))KEILLK_		VTM(1)KEILLK		VTM(44)KEILLK	0	0	1		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-6|MAPKAP1;MAPKAP1|p.V374Tfs*5|1|0.11|ENSG00000119487|chr9:125484530-125484531|CT/-|frameshift_variant	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8309326171875	2	545.83066	1089.64677	0.58236	0.00031787	-0.079143	-4.3199E-05	0.50322	0.00027467	545.8305190649353	29	0.70634	29.012	28.737	29.443	0.012266					53	24	3	0	0	0	0.072885	1	5108	5108		44.392	19.401	1	528330			55258	2882	31717	31718	67571	67571		363			0.10552986470611359
VTMKEILLK	9	Oxidation (M)	_VTM(Oxidation (M))KEILLK_		VTM(1)KEILLK		VTM(59)KEILLK	0	0	1		nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-5|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-6|MAPKAP1;MAPKAP1|p.V374Tfs*5|1|0.11|ENSG00000119487|chr9:125484530-125484531|CT/-|frameshift_variant	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.8308715820312	2	545.83066	1089.64677	0.44273	0.00024166	0.16574	9.0466E-05	0.60847	0.00033212	545.8307231664967	29.019	0.60125	29.032	28.789	29.39	0.013474					53	21	3	0	0	0	0.033439	1	5121	5121		59.052	27.784	1	430370			55259	2882	31717	31718	67572	67572		363			0.10552986470611359
VTMKENCLYR	10	Unmodified	_VTMKENCLYR_					0	0	0		ENST00000535549.5_1_11:128331464-128331587:-|nuORF	ENST00000535549.5_1_11:128331464-128331587:-|nuORF	ENST00000535549.5_1_11:128331464-128331587:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	419.2342529296875	3	419.542381	1255.60531	0.10766	4.5169E-05	0.20448	8.579E-05	0.31215	0.00013096	419.5425881836526	24.293	0.30207	24.22	24.085	24.387	-0.072559					14	9	2	0	0	0	0.31942	1	3680	3680		6.1918	1.2948	1	42408			55260	11673	31718	31719	67573	67573					-0.012265175603488387
VTMMRKEV	8	Unmodified	_VTMMRKEV_					0	0	0		ENSG00000166884|ENST00000300127|OR4D6	ENSG00000166884|ENST00000300127|OR4D6	ENSG00000166884|ENST00000300127|OR4D6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7637023925781	2	497.26463	992.514707	0.91814	0.00045656	0.53154	0.00026431	1.4497	0.00072087	497.2649070904542	50.537	0.81263	50.582	50.007	50.82	0.044891					39	29	2	0	0	0	0.31088	1	11747	11747		28.487	9.0478	1	263980			55261	6125	31719	31720	67574	67574					0.01815058182046414
VTMPNVIVP	9	Unmodified	_VTMPNVIVP_					0	0	0		ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	ENSG00000198515|ENST00000514170|CNGA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8003845214844	2	485.275521	968.536489	0.45483	0.00022072	0.046511	2.257E-05	0.50134	0.00024329	485.27531724022083	44.655	0.71276	44.73	44.389	45.101	0.07505					54	25	4	0	0	0	0.22596	1	9867	9867		21.747	21.747	1	833090			55262	8083	31720	31721	67575	67575					0.0509618620224046
VTNAVLHEV	9	Unmodified	_VTNAVLHEV_					0	0	0		ENSG00000140718|ENST00000471389|FTO;nc|ENSG00000140718|Q9C0B1-4|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.27191162109375	2	491.271824	980.529095	0.54963	0.00027002	-0.92527	-0.00045456	-0.37564	-0.00018454	491.2713989801387	36.821	0.81671	36.821	36.416	37.233	0					51	28	3	0	0	0	0.0016724	1	7530	7530		114.19	70.328	1	494050			55263	4331	31721	31722	67576	67576					0.03805169926192775
VTNAVLHEV	9	Unmodified	_VTNAVLHEV_					0	0	0		ENSG00000140718|ENST00000471389|FTO;nc|ENSG00000140718|Q9C0B1-4|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.2720031738281	2	491.271824	980.529095	0.46423	0.00022806	-0.84471	-0.00041498	-0.38047	-0.00018692	491.2714378574134	36.651	0.76658	36.739	36.403	37.169	0.087406					53	27	3	0	0	0	0.0016724	1	7461	7461		114.19	60.354	1	582650			55264	4331	31721	31722	67577	67577					0.03805169926192775
VTNAVLHEV	9	Unmodified	_VTNAVLHEV_					0	0	0		ENSG00000140718|ENST00000471389|FTO;nc|ENSG00000140718|Q9C0B1-4|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2718200683594	2	491.271824	980.529095	0.73952	0.0003633	-1.1851	-0.00058221	-0.4456	-0.00021891	491.2713232619219	36.703	0.65844	36.796	36.377	37.036	0.093018					46	23	3	0	0	0	0.001957	1	7468	7468		110.55	53.081	1	644170			55265	4331	31721	31722	67578	67578					0.03805169926192775
VTNDFVMLK	9	Oxidation (M)	_VTNDFVM(Oxidation (M))LK_		VTNDFVM(1)LK		VTNDFVM(150)LK	0	0	1		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7813110351562	2	541.781167	1081.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.104	1	43.104	42.604	43.604	0								0	0	0	9.4815E-11	1	9440	9440		147.24	95.611	1				55266	1567	31722	31723	67579	67579		193			0.010269635057284177
VTNDFVMLK	9	Oxidation (M)	_VTNDFVM(Oxidation (M))LK_		VTNDFVM(1)LK		VTNDFVM(170)LK	0	0	1		ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF	ENSG00000100316|ENST00000216146|RPL3	ENSG00000100316|ENST00000216146|RPL3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.781494140625	2	541.781167	1081.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.969	1	43.055	42.555	43.555	0.085197								0	0	0	1.5521E-16	1	9396	9396		171.46	102.36	1				55267	1567	31722	31723	67580	67580		193			0.010269635057284177
VTNDGATILK	10	Unmodified	_VTNDGATILK_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2;ENST00000550455.5_1_12:69979244-69981425:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;ENST00000551620.5_1_12:69979244-69983508:+|nuORF	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2906494140625	2	516.290214	1030.56587	0.47698	0.00024626	-0.14294	-7.38E-05	0.33404	0.00017246	516.2901046625831	29.918	0.53507	29.918	29.659	30.194	0					44	18	3	0	0	0	0.12459	1	5409	5409		64.692	11.222	1	637480			55268	6048	31723	31724	67581	67581					0.051814217520814054
VTNDGATILK	10	Unmodified	_VTNDGATILK_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2;ENST00000550455.5_1_12:69979244-69981425:+|nuORF;ENST00000546859.5_1_12:69979244-69981900:+|nuORF;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;ENST00000551620.5_1_12:69979244-69983508:+|nuORF	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.29052734375	2	516.290214	1030.56587	-0.03385	-1.7476E-05	0.31271	0.00016145	0.27886	0.00014397	516.2904354347207	29.921	0.52237	29.934	29.684	30.207	0.013474					53	17	5	0	0	0	0.016906	1	5408	5408		90.964	3.841	1	799150			55269	6048	31723	31724	67582	67582					0.051814217520814054
VTNLIYHKNI	10	Unmodified	_VTNLIYHKNI_					0	0	0		nc|ENSG00000173239|Q5VYY2-2|LIPM;ENSG00000173239|ENST00000404743|LIPM	nc|ENSG00000173239|Q5VYY2-2|LIPM	nc|ENSG00000173239|Q5VYY2-2|LIPM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.24267578125	3	405.567912	1213.68191	0.16162	6.555E-05	-4.2699	-0.0017318	-4.1083	-0.0016662	405.56607030073025	54.003	0.46412	54.003	53.698	54.162	0					24	16	2	0	0	0	0.31942	1	12757	12757		6.1918	2.8722	1	97335			55270	6707	31724	31725	67583	67583					0.0836136532279852
VTNLIYHKNI	10	Unmodified	_VTNLIYHKNI_					0	0	0		nc|ENSG00000173239|Q5VYY2-2|LIPM;ENSG00000173239|ENST00000404743|LIPM	nc|ENSG00000173239|Q5VYY2-2|LIPM	nc|ENSG00000173239|Q5VYY2-2|LIPM	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	405.567912	1213.68191	0.045015	1.8257E-05	-8.0705	-0.0032731	-8.0254	-0.0032549	405.56462410806876	53.857	0.31995	53.847	53.688	54.008	-0.0096054	-0.077977	-0.00039248	NaN	6.1918	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150100			55271	6707	31724	31725							0.0836136532279852
VTNLKPATR	9	Unmodified	_VTNLKPATR_					0	0	0		ENST00000446149.6_1_1:38181546-38201012:-|nuORF;nc|ENSG00000183317|Q5JZY3-3|EPHA10;ENSG00000183317|ENST00000373048|EPHA10	ENST00000446149.6_1_1:38181546-38201012:-|nuORF	ENST00000446149.6_1_1:38181546-38201012:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.31329345703125	2	500.300916	998.587279	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.553	1	24.553	24.053	25.053	0								0	0	0	0.20639	1	3785	3785		20.454	0	1				55272	7360	31725	31726	67584	67584					0.08792851571467963
VTNPHPEIF	9	Unmodified	_VTNPHPEIF_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7792358398438	2	527.271824	1052.5291	0.61638	0.000325	-2.2833	-0.0012039	-1.6669	-0.00087891	527.2705598232583	85.461	0.25185	85.542	85.337	85.589	0.080879					12	9	2	0	0	0	0.25526	1	22381	22381		7.9102	0.62092	1	73964			55273	4756	31726	31727	67585	67585					0.004931699261760514
VTNPKRIAK	9	Unmodified	_VTNPKRIAK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.82568359375	2	513.824558	1025.63456	-0.019015	-9.7704E-06	0.6057	0.00031122	0.58668	0.00030145	513.8248614972889	13.041	0.64434	13.041	12.783	13.427	0					59	22	3	0	0	0	0.074552	1	305	305		43.772	18.373	1	289680			55274	1028	31727	31728	67586	67586					0.12277130842448969
VTNPKRIAK	9	Unmodified	_VTNPKRIAK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8247680664062	2	513.824558	1025.63456	-0.086327	-4.4357E-05	0.69638	0.00035782	0.61005	0.00031346	513.8248777677619	13.128	0.71208	13.029	12.729	13.441	-0.099291					59	24	4	0	0	0	0.12642	1	320	320		34.402	12.865	1	272310			55275	1028	31727	31728	67587	67587					0.12277130842448969
VTNPKRIAK	9	Unmodified	_VTNPKRIAK_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8253784179688	2	513.824558	1025.63456	-0.199	-0.00010225	0.73496	0.00037764	0.53596	0.00027539	513.8249203781158	13.106	0.74539	13.038	12.671	13.416	-0.067495					61	25	5	0	0	0	0.15763	1	319	319		29.841	5.82	1	290940			55276	1028	31727	31728	67588	67588					0.12277130842448969
VTNPNARLRS	10	Unmodified	_VTNPNARLRS_					0	0	0		ENSG00000144713|ENST00000429711|RPL32	ENSG00000144713|ENST00000429711|RPL32	ENSG00000144713|ENST00000429711|RPL32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.2954711914062	2	564.317628	1126.6207	-0.040953	-2.311E-05	2.9438	0.0016612	2.9028	0.0016381	564.3194501155831	42.511	0.45658	42.511	42.277	42.734	0					18	16	2	0	0	0	0.3144	1	9263	9263		13.042	6.3193	1	102550			55277	4606	31728	31729	67589	67589					0.06245853343352792
VTNRFDQLF	9	Unmodified	_VTNRFDQLF_					0	0	0		nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	nc|ENSG00000142864|Q8NC51-4|SERBP1	nc|ENSG00000142864|Q8NC51-4|SERBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.2960815429688	2	570.29583	1138.57711	0.24914	0.00014208	0.030746	1.7535E-05	0.27988	0.00015962	570.2958714031097	57.722	0.75229	57.722	57.435	58.187	0					59	26	3	0	0	0	0.089483	1	13941	13941		51.415	9.5756	1	1441700			55278	4466	31729	31730	67590	67590					0.013362438462081627
VTNRFDQLF	9	Unmodified	_VTNRFDQLF_					0	0	0		nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	nc|ENSG00000142864|Q8NC51-4|SERBP1	nc|ENSG00000142864|Q8NC51-4|SERBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2957763671875	2	570.29583	1138.57711	0.38968	0.00022223	-0.2436	-0.00013892	0.14608	8.331E-05	570.2956977305457	57.517	0.92116	57.602	57.268	58.189	0.085621					62	33	3	0	0	0	0.017549	2	13872	13872;13924		67.838	29.864	1	1756500			55279	4466	31729	31730	67591;67592	67591					0.013362438462081627
VTNRFDQLF	9	Unmodified	_VTNRFDQLF_					0	0	0		nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1	nc|ENSG00000142864|Q8NC51-4|SERBP1	nc|ENSG00000142864|Q8NC51-4|SERBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.2958984375	2	570.29583	1138.57711	0.23775	0.00013559	-0.30809	-0.0001757	-0.070334	-4.0111E-05	570.2953811667243	57.884	1.1311	57.867	57.197	58.329	-0.017197					73	41	3	0	0	0	0.0085994	1	13994	13994		75.571	21.738	1	1711400			55280	4466	31729	31730	67593	67593					0.013362438462081627
VTNTTFLLM	9	Oxidation (M)	_VTNTTFLLM(Oxidation (M))_		VTNTTFLLM(1)		VTNTTFLLM(85)	0	0	1		nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000597026.5_1_19:19017767-19023834:-|nuORF	nc|ENSG00000105669|O14579-3|COPE	nc|ENSG00000105669|O14579-3|COPE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.8713989257812	2	528.275718	1054.53688	0.58563	0.00030938	-0.29939	-0.00015816	0.28624	0.00015122	528.2751097152405	62.475	0.56282	62.475	62.213	62.776	0					33	20	2	0	0	0	0.0063774	1	15418	15418		85.272	27.801	1	912980			55281	2005	31730	31731	67594	67594		246			0.011795611314255439
VTNTTFLLM	9	Oxidation (M)	_VTNTTFLLM(Oxidation (M))_		VTNTTFLLM(1)		VTNTTFLLM(71)	0	0	1		nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000597026.5_1_19:19017767-19023834:-|nuORF	nc|ENSG00000105669|O14579-3|COPE	nc|ENSG00000105669|O14579-3|COPE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.77099609375	2	528.275718	1054.53688	0.49468	0.00026133	-0.45442	-0.00024006	0.040261	2.1269E-05	528.2749742264134	62.393	0.6545	62.49	62.2	62.855	0.096985					35	23	2	0	0	0	0.018829	1	15460	15460		71.134	16.36	1	897950			55282	2005	31730	31731	67595	67595		246			0.011795611314255439
VTNTTFLLM	9	Oxidation (M)	_VTNTTFLLM(Oxidation (M))_		VTNTTFLLM(1)		VTNTTFLLM(75)	0	0	1		nc|ENSG00000105669|O14579-3|COPE;ENSG00000105669|ENST00000262812|COPE;ENST00000597026.5_1_19:19017767-19023834:-|nuORF	nc|ENSG00000105669|O14579-3|COPE	nc|ENSG00000105669|O14579-3|COPE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.87109375	2	528.275718	1054.53688	0.56362	0.00029775	-0.34931	-0.00018453	0.21431	0.00011322	528.2751191534545	62.448	0.51189	62.44	62.219	62.731	-0.0085564					27	18	2	0	0	0	0.012082	1	15404	15404		74.929	26.583	1	791820			55283	2005	31730	31731	67596	67596		246			0.011795611314255439
VTNVMFSQEL	10	Unmodified	_VTNVMFSQEL_					0	0	0			REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	REV__CCDC168|p.P6917Yfs*11|1|0.06|ENSG00000175820|chr13:102729949-102729950|-/AACGTGACAGAAAGAAGAGAGTGTAT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2880859375	2	584.289356	1166.56416	0.29265	0.00017099	-2.3365	-0.0013652	-2.0438	-0.0011942	584.2885505856126	57.507	2.8248	57.592	57.156	59.981	0.085617					316	101	6	0	0	0	0.25219	1	14295	14295		26.268	0.86883	1	84754000	+		55284	13140	31731	31732	67597	67597					-0.012459553281814806
VTPAPFGSGPG	11	Unmodified	_VTPAPFGSGPG_					0	0	0			REV__nc|ENSG00000116731|Q13029-5|PRDM2	REV__nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2867126464844	2	493.750724	985.486896	0.33651	0.00016615	0.52045	0.00025697	0.85696	0.00042313	493.7509875712123	43.803	0.35808	43.803	43.681	44.039	0					23	12	3	0	0	0	0.32293	1	9674	9674		13.042	1.4022	1	162130	+		55285	14933	31732	31733	67598	67598					-0.0064280548217539035
VTPEALLSAR	10	Unmodified	_VTPEALLSAR_					0	0	0		ENST00000575231.1_1_16:67963850-67964919:-|nuORF	ENST00000575231.1_1_16:67963850-67964919:-|nuORF	ENST00000575231.1_1_16:67963850-67964919:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2819213867188	2	528.806031	1055.59751	0.45955	0.00024301	-0.98335	-0.00052	-0.5238	-0.00027699	528.8056285140926	53.919	0.57975	53.975	53.766	54.346	0.056255					36	21	2	0	0	0	0.29038	1	12857	12857		18.146	8.7632	1	291160			55286	12046	31733	31734	67599	67599					0.07193414506036788
VTPFFSLNHRE	11	Unmodified	_VTPFFSLNHRE_					0	0	0			REV__ENSG00000138380|ENST00000438828|CARF	REV__ENSG00000138380|ENST00000438828|CARF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.7587890625	3	449.566571	1345.67788	0.49301	0.00022164	-0.90865	-0.0004085	-0.41564	-0.00018686	449.56605449096594	36.928	0.37561	37.021	36.872	37.248	0.093018					21	13	2	0	0	0	0.33094	1	7588	7588		4.7159	3.6062	1	215350	+		55287	15925	31734	31735	67600	67600					0.018872758290854108
VTPGLTRLL	9	Unmodified	_VTPGLTRLL_					0	0	0			REV__ENSG00000110628|ENST00000649076|SLC22A18	REV__ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8004150390625	2	485.30821	968.601866	0.39715	0.00019274	-0.086343	-4.1903E-05	0.3108	0.00015084	485.3080810004492	59.251	0.83088	59.237	58.684	59.515	-0.014267					49	28	2	0	0	0	0.14786	1	14305	14305		31.268	2.1868	1	218820	+		55288	14676	31735	31736	67601	67601					0.11630923719621933
VTPGTTLPSI	10	Unmodified	_VTPGTTLPSI_					0	0	0		ADGRG4|p.K2380Nfs*2|1|0.45|ENSG00000156920|chrX:136359446-136359446|A/-|frameshift_variant;nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ENSG00000156920|ENST00000394143|ADGRG4	ADGRG4|p.K2380Nfs*2|1|0.45|ENSG00000156920|chrX:136359446-136359446|A/-|frameshift_variant	ADGRG4|p.K2380Nfs*2|1|0.45|ENSG00000156920|chrX:136359446-136359446|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7626647949219	2	493.281857	984.549162	0.31666	0.0001562	2.1472	0.0010592	2.4639	0.0012154	493.2819636880785	67.181	0.31354	67.259	67.04	67.354	0.078041					16	10	2	0	0	0	0.30586	1	16816	16816		13.906	0	1	67440			55289	17	31736	31737	67602	67602					0.056269208661547054
VTPGWAPPG	9	Unmodified	_VTPGWAPPG_					0	0	0		ENST00000601612.5_1_19:50363535-50363989:+|nuORF	ENST00000601612.5_1_19:50363535-50363989:+|nuORF	ENST00000601612.5_1_19:50363535-50363989:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2637023925781	2	441.229428	880.444303	0.089321	3.9411E-05	-3.953	-0.0017442	-3.8637	-0.0017048	441.2277804281217	19.648	0.35913	19.532	19.341	19.7	-0.11592					17	11	2	0	0	0	0.18943	1	2332	2332		23.148	3.7094	1	26751			55290	12259	31737	31738	67603	67603					-0.0007015581976475005
VTPHPIPG	8	Unmodified	_VTPHPIPG_					0	0	0			REV__ENST00000398081.5_1_21:45157766-45157862:+|nuORF	REV__ENST00000398081.5_1_21:45157766-45157862:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.575439453125	2	409.231971	816.449388	-0.18034	-7.3803E-05	4.075	0.0016676	3.8947	0.0015938	409.2337429929665	19.685	0.11264	19.685	19.627	19.739	0					5	3	2	0	0	0	0.34218	1	2296	2296		9.3474	0	1	6172.9	+		55291	20681	31738	31739	67604	67604					0.033821480428514406
VTPLQDPQGLF	11	Unmodified	_VTPLQDPQGLF_					0	0	0		ENSG00000149016|ENST00000476907|TUT1;ENST00000469480.1_1_11:62342568-62343792:-|nuORF	ENSG00000149016|ENST00000476907|TUT1	ENSG00000149016|ENST00000476907|TUT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.8250122070312	2	607.824421	1213.63429	0.4588	0.00027887	-0.64754	-0.00039359	-0.18874	-0.00011472	607.8240370993468	57.576	0.94582	57.576	57.323	58.269	0					50	33	2	0	0	0	0.31831	1	13912	13912		20.581	5.3325	1	772710			55292	4839	31739	31740	67605	67605					0.036016663319287545
VTPLQDPQGLF	11	Unmodified	_VTPLQDPQGLF_					0	0	0		ENSG00000149016|ENST00000476907|TUT1;ENST00000469480.1_1_11:62342568-62343792:-|nuORF	ENSG00000149016|ENST00000476907|TUT1	ENSG00000149016|ENST00000476907|TUT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.8244018554688	2	607.824421	1213.63429	0.46544	0.00028291	-0.42627	-0.0002591	0.03917	2.3809E-05	607.8242418269627	57.38	1.0394	57.466	57.24	58.279	0.085621					51	36	2	0	0	0	0.29518	1	13857	13857		22.658	2.2436	1	940510			55293	4839	31739	31740	67606	67606					0.036016663319287545
VTPMEVDIL	9	Unmodified	_VTPMEVDIL_					0	0	0		nc|ENSG00000004864|Q9UJS0-2|SLC25A13;ENSG00000004864|ENST00000265631|SLC25A13	nc|ENSG00000004864|Q9UJS0-2|SLC25A13	nc|ENSG00000004864|Q9UJS0-2|SLC25A13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.3059997558594	2	508.770268	1015.52598	0.42667	0.00021708	0.56161	0.00028573	0.98828	0.00050281	508.77037615091774	82.851	0.80207	82.83	82.569	83.371	-0.020584					49	31	2	0	0	0	0.2322	1	21655	21655		10.074	10.074	1	299720			55294	317	31740	31741	67607	67607					0.018841587571614582
VTPMQGLSTPW	11	Unmodified	_VTPMQGLSTPW_					0	0	0			REV__ENST00000400337.6_1_21:46825125-46888416:+|nuORF	REV__ENST00000400337.6_1_21:46825125-46888416:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.52532958984375	3	406.205875	1215.59579	-0.22396	-9.0973E-05	1.0322	0.00041928	0.80824	0.00032831	406.20621138534693	18.475	0.90779	18.475	17.802	18.71	0					47	30	2	0	0	0	0.33146	1	1971	1971		6.6235	1.3266	1	104130	+		55295	20190	31741	31742	67608	67608					-0.0033796257421272458
VTPPPIPKSN	10	Unmodified	_VTPPPIPKSN_					0	0	0		ENST00000542095.6_2_12:8245524-8245695:+|nuORF;ENSG00000089818|ENST00000339754|NECAP1	ENST00000542095.6_2_12:8245524-8245695:+|nuORF	ENST00000542095.6_2_12:8245524-8245695:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3016967773438	2	525.303124	1048.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.065	1	12.065	11.565	12.565	0								0	0	0	0.37157	1	15	15		5.7319	0	1				55296	1366	31742	31743	67609	67609					0.06934315994362805
VTPPQLPLI	9	Unmodified	_VTPPQLPLI_					0	0	0		ENST00000606019.5_1_7:96275054-96276828:-|nuORF	ENST00000606019.5_1_7:96275054-96276828:-|nuORF	ENST00000606019.5_1_7:96275054-96276828:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.8086242675781	2	489.305136	976.595718	0.68579	0.00033556	-4.3505	-0.0021287	-3.6647	-0.0017931	489.30476824341594	56.856	0.68931	56.837	56.568	57.257	-0.019077					40	24	3	0	0	0	0.21389	1	13780	13780		25.399	6.1423	1	319100			55297	12292	31743	31744	67610	67610					0.10648405488097978
VTPPQLPLI	9	Unmodified	_VTPPQLPLI_					0	0	0		ENST00000606019.5_1_7:96275054-96276828:-|nuORF	ENST00000606019.5_1_7:96275054-96276828:-|nuORF	ENST00000606019.5_1_7:96275054-96276828:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	489.305136	976.595718	0.41191	0.00020155	-4.1703	-0.0020406	-3.7584	-0.001839	489.30489273751596	56.897	0.59142	56.897	56.499	57.09	0	0.030181	6.7889E-05	NaN	25.399	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235420			55298	12292	31743	31744							0.10648405488097978
VTPRAFKTQ	9	Unmodified	_VTPRAFKTQ_					0	0	0		nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15;ENST00000549268.1_1_12:62768286-62777812:+|nuORF	nc|ENSG00000135655|Q9Y4E8-2|USP15	nc|ENSG00000135655|Q9Y4E8-2|USP15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3134155273438	2	524.300916	1046.58728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.271	1	27.271	26.771	27.771	0								0	0	0	0.19013	1	4605	4605		25.399	1.3787	1				55299	3891	31744	31745	67611	67611					0.06584851571460604
VTPRRNRQQR	10	Unmodified	_VTPRRNRQQR_					0	0	0		ENSG00000154127|ENST00000284273|UBASH3B;ENST00000525711.1_1_11:122526757-122598246:+|nuORF	ENSG00000154127|ENST00000284273|UBASH3B	ENSG00000154127|ENST00000284273|UBASH3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.2453918457031	3	437.588592	1309.74395	0.17989	7.872E-05	-0.40085	-0.00017541	-0.22095	-9.6687E-05	437.588453897463	51.038	0.44904	51.085	50.872	51.321	0.046574					31	16	3	0	0	0	0.31994	1	11833	11833		5.4027	1.5568	1	282680			55300	5106	31745	31746	67612	67612					0.10146529514486247
VTPRRPLRP	9	Unmodified	_VTPRRPLRP_					0	0	0			REV__ENST00000542540.5_1_12:121708713-121712128:-|nuORF	REV__ENST00000542540.5_1_12:121708713-121712128:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.7675170898438	2	546.343449	1090.67235	0.21978	0.00012007	2.1164	0.0011563	2.3362	0.0012764	546.344247187694	14.186	0.61406	14.12	13.949	14.563	-0.066068					51	21	3	0	0	0	0.26168	1	760	760		1.8442	0	1	157870	+		55301	14694	31746	31747	67613	67613					0.13063641827920947
VTPRSREAFG	10	Unmodified	_VTPRSREAFG_					0	0	0		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2990112304688	2	560.298904	1118.58326	0.3519	0.00019717	-0.9469	-0.00053055	-0.595	-0.00033338	560.2981959447386	21.48	1.0207	21.48	20.798	21.819	0					74	35	3	0	0	0	0.38773	1	2884	2884		5.7319	0.97584	1	138480			55302	6135	31747	31748	67614	67614					0.028707620777367993
VTPTLVIAV	9	Unmodified	_VTPTLVIAV_					0	0	0			REV__ENST00000528804.1_1_14:24682310-24682343:-|nuORF	REV__ENST00000528804.1_1_14:24682310-24682343:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.793212890625	2	456.791861	911.569169	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.524	1	34.599	34.099	35.099	0.075306								0	0	0	0.264	1	6817	6817		1.8442	1.2427	1		+		55303	21991	31748	31749	67615	67615					0.10984716596738053
VTPVQQILTN	10	Unmodified	_VTPVQQILTN_					0	0	0		ENST00000556268.1_1_14:81663747-81682801:-|nuORF;nc|ENSG00000165417|P52655-2|GTF2A1;ENST00000298173.7_1_14:81646569-81676264:-|nuORF;ENSG00000165417|ENST00000553612|GTF2A1	ENST00000556268.1_1_14:81663747-81682801:-|nuORF	ENST00000556268.1_1_14:81663747-81682801:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8087768554688	2	556.819138	1111.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.117	1	65.206	64.706	65.706	0.088882								0	0	0	0.33119	1	16219	16219		22.736	3.4793	1				55304	5959	31749	31750	67616	67616					0.07237683677522
VTPYQFQF	8	Unmodified	_VTPYQFQF_					0	0	0			REV__HIVEP2|p.K1731Ifs*8|1|0.06|ENSG00000010818|chr6:142768532-142768533|-/GAAAGCTGAAAGTAAA|frameshift_variant	REV__HIVEP2|p.K1731Ifs*8|1|0.06|ENSG00000010818|chr6:142768532-142768533|-/GAAAGCTGAAAGTAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2737426757812	2	515.255643	1028.49673	0.27833	0.00014341	0.16604	8.5553E-05	0.44438	0.00022897	515.2557181400492	57.768	0.48146	57.854	57.63	58.112	0.085621					39	17	3	0	0	0	0.41097	1	14034	14034		18.135	0	1	436410	+		55305	13420	31750	31751	67617	67617					-0.01637617476808373
VTQAPISAR	9	Unmodified	_VTQAPISAR_					0	0	0		ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7718505859375	2	471.771991	941.529429	0.0095934	4.5259E-06	-0.027958	-1.319E-05	-0.018365	-8.6641E-06	471.7718602058754	23.317	0.50252	23.229	23.046	23.548	-0.087608					42	17	3	0	0	0	0.043711	1	3406	3406		55.235	3.8194	1	241600			55306	1695	31751	31752	67618	67618					0.056325896460293734
VTQAPISAR	9	Unmodified	_VTQAPISAR_					0	0	0		ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	471.771991	941.529429	-0.12364	-5.8329E-05	0.12262	5.7847E-05	-0.0010223	-4.8228E-07	471.7719270072904	23.248	0.57287	23.248	23.021	23.593	0	0.0041681	0.00014095	NaN	55.235	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195410			55307	1695	31751	31752							0.056325896460293734
VTQAPISAR	9	Unmodified	_VTQAPISAR_					0	0	0		ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	471.771991	941.529429	0.20894	9.8573E-05	-0.19637	-9.2642E-05	0.01257	5.9302E-06	471.7717690010582	23.299	0.50125	23.254	23.084	23.586	-0.044867	0.01051	-0.00016003	NaN	55.235	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238390			55308	1695	31751	31752							0.056325896460293734
VTQELAISR	9	Unmodified	_VTQELAISR_					0	0	0		ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.8211975097656	2	508.790381	1015.56621	0.61707	0.00031396	-0.25593	-0.00013022	0.36114	0.00018374	508.79011963855135	32.463	0.38336	32.463	32.279	32.662	0					22	13	2	0	0	0	0.25756	1	6239	6239		7.1017	1.8048	1	112010			55309	7703	31752	31753	67619	67619					0.05904841471931377
VTQELAISR	9	Unmodified	_VTQELAISR_					0	0	0		ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8212585449219	2	508.790381	1015.56621	0.30559	0.00015548	0.43511	0.00022138	0.7407	0.00037686	508.7905170497476	32.358	0.43459	32.412	32.223	32.658	0.054375					25	15	2	0	0	0	0.25527	1	6211	6211		9.544	1.935	1	139450			55310	7703	31752	31753	67620	67620					0.05904841471931377
VTQELAISR	9	Unmodified	_VTQELAISR_					0	0	0		ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	508.790381	1015.56621	0.60958	0.00031015	0.035846	1.8238E-05	0.64543	0.00032839	508.7903833561119	32.342	0.35569	32.397	32.206	32.562	0.055309	-0.026887	1.4427E-05	NaN	17.443	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138330			55311	7703	31752	31753							0.05904841471931377
VTQIGERKVET	11	Unmodified	_VTQIGERKVET_					0	0	0			REV__ENSG00000100625|ENST00000216513|SIX4	REV__ENSG00000100625|ENST00000216513|SIX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.2432556152344	3	420.569981	1258.68811	-0.22565	-9.4901E-05	0.55885	0.00023504	0.3332	0.00014014	420.57016724582917	15.002	0.42769	14.937	14.7	15.128	-0.064413					22	14	2	0	0	0	0.32683	1	915	915		15.538	5.2232	1	83704	+		55312	14216	31753	31754	67621	67621					0.06911838763676315
VTQKLLPAK	9	Unmodified	_VTQKLLPAK_					0	0	0		ENST00000464021.1_1_7:76911943-76916258:+|nuORF;ENST00000474733.5_1_7:76911883-76916812:+|nuORF;nc|ENSG00000135205|Q8IYE0-2|CCDC146;ENSG00000135205|ENST00000285871|CCDC146	ENST00000464021.1_1_7:76911943-76916258:+|nuORF	ENST00000464021.1_1_7:76911943-76916258:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.8091125488281	2	499.32386	996.633166	0.41056	0.000205	-0.16666	-8.3216E-05	0.24391	0.00012179	499.3237230545242	30.641	0.5048	30.641	30.333	30.838	0					30	17	3	0	0	0	0.25622	1	5550	5550		7.2892	0.56607	1	141850			55313	3851	31754	31755	67622	67622					0.1347149675369792
VTQKLLPAK	9	Unmodified	_VTQKLLPAK_					0	0	0		ENST00000464021.1_1_7:76911943-76916258:+|nuORF;ENST00000474733.5_1_7:76911883-76916812:+|nuORF;nc|ENSG00000135205|Q8IYE0-2|CCDC146;ENSG00000135205|ENST00000285871|CCDC146	ENST00000464021.1_1_7:76911943-76916258:+|nuORF	ENST00000464021.1_1_7:76911943-76916258:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	499.32386	996.633166	0.40923	0.00020434	0.070433	3.5169E-05	0.47966	0.00023951	499.3238289077364	30.52	0.45588	30.548	30.354	30.81	0.027948	-0.03426	8.7168E-05	NaN	7.2892	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146260			55314	3851	31754	31755							0.1347149675369792
VTQKLLPAK	9	Unmodified	_VTQKLLPAK_					0	0	0		ENST00000464021.1_1_7:76911943-76916258:+|nuORF;ENST00000474733.5_1_7:76911883-76916812:+|nuORF;nc|ENSG00000135205|Q8IYE0-2|CCDC146;ENSG00000135205|ENST00000285871|CCDC146	ENST00000464021.1_1_7:76911943-76916258:+|nuORF	ENST00000464021.1_1_7:76911943-76916258:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	499.32386	996.633166	0.10579	5.2822E-05	0.10252	5.1192E-05	0.20831	0.00010401	499.32387312787483	30.531	0.423	30.558	30.335	30.758	0.027157	-0.024223	0.00011921	NaN	7.2892	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131450			55315	3851	31754	31755							0.1347149675369792
VTQLQLQS	8	Unmodified	_VTQLQLQS_					0	0	0		ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.26947021484375	2	458.758549	915.502546	0.39033	0.00017907	0.10483	4.8092E-05	0.49516	0.00022716	458.7585912042677	20.782	0.62951	20.672	20.35	20.979	-0.11003					31	21	2	0	0	0	0.32537	1	2669	2669		24.021	3.5669	1	76557			55316	7651	31755	31756	67623	67623					0.04141481034844219
VTQLQSQI	8	Unmodified	_VTQLQSQI_					0	0	0		ENST00000483412.5_1_9:123170580-123298708:-|nuORF;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2	ENST00000483412.5_1_9:123170580-123298708:-|nuORF	ENST00000483412.5_1_9:123170580-123298708:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.2695007324219	2	458.758549	915.502546	0.41916	0.0001923	-0.14891	-6.8315E-05	0.27025	0.00012398	458.75844802969095	20.662	0.81569	20.609	20.302	21.118	-0.052912					49	28	2	0	0	0	0.33988	1	2623	2623		18.146	0	1	77588			55317	4007	31756	31757	67624	67624					0.04141481034844219
VTQLQVTK	8	Unmodified	_VTQLQVTK_					0	0	0		ENST00000479096.1_1_20:30135258-30136578:+|nuORF	ENST00000479096.1_1_20:30135258-30136578:+|nuORF	ENST00000479096.1_1_20:30135258-30136578:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2501525878906	2	458.776742	915.538931	-0.066047	-3.0301E-05	-0.62833	-0.00028826	-0.69438	-0.00031856	458.7763174634093	23.188	0.60637	23.1	22.909	23.515	-0.087608					41	21	3	0	0	0	0.32886	1	3397	3397		15.847	0	1	141630			55318	10986	31757	31758	67625	67625					0.07778357931556457
VTQLRHAI	8	Unmodified	_VTQLRHAI_					0	0	0			REV__ENSG00000204267|ENST00000374897|TAP2	REV__ENSG00000204267|ENST00000374897|TAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.76666259765625	2	469.282526	936.550499	-0.24928	-0.00011698	-0.67086	-0.00031482	-0.92014	-0.00043181	469.2820360137414	27.788	0.50589	27.788	27.53	28.036	0					35	17	3	0	0	0	0.34247	1	4744	4744		8.5933	0	1	190900	+		55319	18929	31758	31759	67626	67626					0.0796859974553854
VTQLRHAI	8	Unmodified	_VTQLRHAI_					0	0	0			REV__ENSG00000204267|ENST00000374897|TAP2	REV__ENSG00000204267|ENST00000374897|TAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7663879394531	2	469.282526	936.550499	-0.23236	-0.00010904	-0.62459	-0.00029311	-0.85695	-0.00040215	469.2821746692683	27.772	0.53951	27.75	27.528	28.067	-0.021412					35	18	3	0	0	0	0.33245	1	4741	4741		13.508	0	1	225290	+		55320	18929	31758	31759	67627	67627					0.0796859974553854
VTQLRHAI	8	Unmodified	_VTQLRHAI_					0	0	0			REV__ENSG00000204267|ENST00000374897|TAP2	REV__ENSG00000204267|ENST00000374897|TAP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7666320800781	2	469.282526	936.550499	-0.19261	-9.039E-05	-0.71463	-0.00033536	-0.90724	-0.00042575	469.2820869807655	27.74	0.48442	27.728	27.527	28.011	-0.011562					35	16	3	0	0	0	0.34092	1	4737	4737		13.508	0	1	226190	+		55321	18929	31758	31759	67628	67628					0.0796859974553854
VTQMFFMH	8	Unmodified	_VTQMFFMH_					0	0	0		ENSG00000176246|ENST00000315683|OR4L1	ENSG00000176246|ENST00000315683|OR4L1	ENSG00000176246|ENST00000315683|OR4L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2852172851562	2	520.738248	1039.46194	0.42095	0.0002192	0.75681	0.0003941	1.1778	0.0006133	520.7386805233497	66.895	0.59216	66.895	66.6	67.193	0					31	20	2	0	0	0	0.34167	1	16774	16774		11.64	1.5664	1	98504			55322	6913	31759	31760	67629	67629					-0.056208998807733224
VTQNKQAIK	9	Unmodified	_VTQNKQAIK_					0	0	0			REV__ITGA9|p.H902Lfs*11|1|0.44|ENSG00000144668|chr3:37779939-37779951|ACTGTAACTTTAG/-|frameshift_variant	REV__ITGA9|p.H902Lfs*11|1|0.44|ENSG00000144668|chr3:37779939-37779951|ACTGTAACTTTAG/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.29736328125	2	515.306198	1028.59784	0.5489	0.00028285	0.032498	1.6746E-05	0.5814	0.0002996	515.3061289794165	20.803	0.59747	20.693	20.466	21.063	-0.11003					40	20	3	0	0	0	0.2869	1	2695	2695		10.8	0	1	187880	+		55323	16251	31760	31761	67630	67630					0.08468834225868704
VTQPASKTSL	10	Unmodified	_VTQPASKTSL_					0	0	0		ENST00000326775.9_1_7:99102345-99103658:+|nuORF;ENST00000394170.6_1_7:99102601-99103658:+|nuORF	ENST00000326775.9_1_7:99102345-99103658:+|nuORF	ENST00000326775.9_1_7:99102345-99103658:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.8010864257812	2	516.290214	1030.56587	0.32834	0.00016952	0.45317	0.00023397	0.78151	0.00040349	516.290696647356	29.904	0.99607	29.916	29.654	30.65	0.012266					63	34	3	0	0	0	0.26265	1	5486	5486		24.991	0	1	590770			55324	9419	31761	31762	67631	67631					0.051814217520814054
VTQPTVGMNFK	11	Oxidation (M)	_VTQPTVGM(Oxidation (M))NFK_		VTQPTVGM(1)NFK		VTQPTVGM(85)NFK	0	0	1		ENSG00000182774|ENST00000647841|RPS17;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENST00000558397.1_1_15:83205554-83206687:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000561157.5_1_15:83205554-83205662:-|nuORF	ENSG00000182774|ENST00000647841|RPS17;ENST00000561157.5_1_15:83205554-83205662:-|nuORF	ENSG00000182774|ENST00000647841|RPS17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.3158569335938	2	619.315906	1236.61726	-0.61836	-0.00038296	0.22421	0.00013886	-0.39415	-0.0002441	619.3160876824593	34.532	0.72816	34.532	34.164	34.892	0					62	25	3	0	0	0	0.0028803	2	6856	6799;6856		84.738	23.838	1	544350			55325	7316;11910	31762	31763	67632;67633	67633		816			0.008414224544594617
VTQPTVGMNFK	11	Oxidation (M)	_VTQPTVGM(Oxidation (M))NFK_		VTQPTVGM(1)NFK		VTQPTVGM(85)NFK	0	0	1		ENSG00000182774|ENST00000647841|RPS17;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENST00000558397.1_1_15:83205554-83206687:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000561157.5_1_15:83205554-83205662:-|nuORF	ENSG00000182774|ENST00000647841|RPS17;ENST00000561157.5_1_15:83205554-83205662:-|nuORF	ENSG00000182774|ENST00000647841|RPS17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.3160400390625	2	619.315906	1236.61726	-0.83094	-0.00051462	0.32628	0.00020207	-0.50466	-0.00031255	619.3160963541329	34.445	0.80265	34.52	34.101	34.904	0.075306					68	28	3	0	0	0	0.0028803	2	6784	6784;6836		84.738	23.838	1	578410			55326	7316;11910	31762	31763	67634;67635	67634		816			0.008414224544594617
VTQPTVGMNFK	11	Oxidation (M)	_VTQPTVGM(Oxidation (M))NFK_		VTQPTVGM(1)NFK		VTQPTVGM(76)NFK	0	0	1		ENSG00000182774|ENST00000647841|RPS17;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENST00000558397.1_1_15:83205554-83206687:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000561157.5_1_15:83205554-83205662:-|nuORF	ENSG00000182774|ENST00000647841|RPS17;ENST00000561157.5_1_15:83205554-83205662:-|nuORF	ENSG00000182774|ENST00000647841|RPS17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.3155517578125	2	619.315906	1236.61726	-0.21469	-0.00013296	-0.31004	-0.00019202	-0.52474	-0.00032498	619.3156698257739	34.376	0.83497	34.451	34.029	34.864	0.074966					69	29	3	0	0	0	0.0068129	3	6814	6722;6769;6814		76.416	26.674	1	562890			55327	7316;11910	31762	31763	67636;67637;67638	67638		816			0.008414224544594617
VTQPVLRPVQ	10	Unmodified	_VTQPVLRPVQ_					0	0	0		nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;nc|ENSG00000143442|Q7Z3K3-4|POGZ;ENST00000467287.5_1_1:151401965-151414680:-|nuORF	nc|ENSG00000143442|Q7Z3K3-2|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.3109130859375	2	568.842948	1135.67134	0.13647	7.7631E-05	-0.1323	-7.5259E-05	0.0041693	2.3717E-06	568.8430174015823	55.481	0.38222	55.481	55.325	55.707	0					20	13	2	0	0	0	0.31691	1	13228	13228		9.3831	0.63772	1	272040			55328	4516	31763	31764	67639	67639					0.10893382668359664
VTQRNGRQR	9	Unmodified	_VTQRNGRQR_					0	0	0			REV__ENST00000471507.5_1_1:16693778-16719770:+|nuORF	REV__ENST00000471507.5_1_1:16693778-16719770:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3136596679688	2	557.813045	1113.61154	0.32036	0.0001787	0.7684	0.00042862	1.0888	0.00060733	558.314241448656	24.222	0.68701	24.149	23.756	24.443	-0.072559					55	22	3	0	0	0	0.26168	1	3662	3662		1.8442	0	1	88162	+		55329	20709	31764	31765	67640	67640					0.05927504777696413
VTQSEIAQK	9	Unmodified	_VTQSEIAQK_					0	0	0		ENST00000533345.5_1_11:12419899-12534890:+|nuORF;ENSG00000197702|ENST00000334956|PARVA	ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENST00000533345.5_1_11:12419899-12534890:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.274658203125	2	502.274564	1002.53457	0.29328	0.00014731	1.0221	0.00051336	1.3154	0.00066067	502.2745296446394	17.544	1.2911	17.544	16.925	18.216	0					110	44	5	0	0	0	1.4498E-07	2	1676	1626;1676		174.48	71.128	1	994190			55330	7990	31765	31766	67641;67642	67642					0.033408487179940494
VTQSEIAQK	9	Unmodified	_VTQSEIAQK_					0	0	0		ENST00000533345.5_1_11:12419899-12534890:+|nuORF;ENSG00000197702|ENST00000334956|PARVA	ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENST00000533345.5_1_11:12419899-12534890:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2746887207031	2	502.274564	1002.53457	0.14065	7.0644E-05	0.16625	8.3504E-05	0.3069	0.00015415	502.2746372239771	17.735	1.0691	17.617	17.289	18.358	-0.11739					71	36	3	0	0	0	4.5677E-07	2	1704	1704;1750		162.31	51.027	1	1112400			55331	7990	31765	31766	67643;67644	67643					0.033408487179940494
VTQSEIAQK	9	Unmodified	_VTQSEIAQK_					0	0	0		ENST00000533345.5_1_11:12419899-12534890:+|nuORF;ENSG00000197702|ENST00000334956|PARVA	ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENST00000533345.5_1_11:12419899-12534890:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.2746276855469	2	502.274564	1002.53457	0.229	0.00011502	-0.067204	-3.3755E-05	0.16179	8.1265E-05	502.27457534153444	17.693	1.0703	17.633	17.33	18.4	-0.060429					85	37	3	0	0	0	4.9382E-11	4	1716	1674;1716;1759;1815		187.14	75.855	1	999330			55332	7990	31765	31766	67645;67646;67647;67648	67646					0.033408487179940494
VTQSEIGQK	9	Unmodified	_VTQSEIGQK_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2669372558594	2	495.266739	988.518924	0.29404	0.00014563	-0.321	-0.00015898	-0.026958	-1.3351E-05	495.2665066863495	16.432	0.53606	16.432	16.152	16.689	0					45	18	3	0	0	0	0.14786	2	1302	1302;1361		31.268	10.815	1	99988			55333	7767	31766	31767	67649;67650	67649					0.024205622009503713
VTQSEIGQK	9	Unmodified	_VTQSEIGQK_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2667541503906	2	495.266739	988.518924	0.20827	0.00010315	-0.38405	-0.00019021	-0.17578	-8.7057E-05	495.2665139972866	16.53	0.53227	16.415	16.191	16.723	-0.11434					43	18	3	0	0	0	0.15763	1	1344	1344		29.841	11.694	1	98742			55334	7767	31766	31767	67651	67651					0.024205622009503713
VTQSEIGQK	9	Unmodified	_VTQSEIGQK_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2664489746094	2	495.266739	988.518924	0.3127	0.00015487	-0.32809	-0.00016249	-0.015387	-7.6207E-06	495.2665843974371	16.458	0.60859	16.396	16.121	16.729	-0.062532					44	20	4	0	0	0	0.059067	1	1320	1320		49.527	21.898	1	111400			55335	7767	31766	31767	67652	67652					0.024205622009503713
VTQVEKYY	8	Unmodified	_VTQVEKYY_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.3009033203125	2	515.266207	1028.51786	0.37693	0.00019422	-0.46937	-0.00024185	-0.092442	-4.7632E-05	515.2658377640828	36.37	0.7753	36.453	36.362	37.137	0.082355					34	27	2	0	0	0	0.31617	1	7407	7407		26.884	2.2098	1	150980	+		55336	14758	31767	31768	67653	67653					0.004743478320506256
VTQVIIELTDL	11	Unmodified	_VTQVIIELTDL_					0	0	0			REV__ENSG00000130158|ENST00000294618|DOCK6	REV__ENSG00000130158|ENST00000294618|DOCK6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.24993896484375	3	415.242983	1242.70712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.955	1	36.037	35.537	36.537	0.082355								0	0	0	0.304	1	7254	7254		18.34	6.7083	1		+		55337	15439	31768	31769	67654	67654					0.09547375334705066
VTQVIIELTDL	11	Unmodified	_VTQVIIELTDL_					0	0	0			REV__ENSG00000130158|ENST00000294618|DOCK6	REV__ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.2500915527344	3	415.242983	1242.70712	0.43738	0.00018162	-2.0105	-0.00083484	-1.5731	-0.00065322	415.2423276948743	35.981	0.16108	36.067	36.009	36.17	0.08625					7	5	2	0	0	0	0.31969	1	7246	7246		18.34	7.8122	1	110030	+		55338	15439	31768	31769	67655	67655					0.09547375334705066
VTQYLQNQL	9	Unmodified	_VTQYLQNQL_					0	0	0		ENST00000439768.2_1_5:153433260-153433407:+|nuORF	ENST00000439768.2_1_5:153433260-153433407:+|nuORF	ENST00000439768.2_1_5:153433260-153433407:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3038330078125	2	553.795663	1105.57677	0.49967	0.00027672	-1.1378	-0.00063011	-0.63812	-0.00035339	553.7953700119748	39.917	0.27354	40.01	39.777	40.051	0.09267					14	9	2	0	0	0	0.25526	1	8403	8403		7.9102	0	1	169810			55339	10547	31769	31770	67656	67656					0.02820824126365551
VTRAFSFSK	9	Unmodified	_VTRAFSFSK_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.2593383789062	2	521.787641	1041.56073	0.29978	0.00015642	-0.42661	-0.0002226	-0.12683	-6.6178E-05	521.7871137416912	23.703	0.66461	23.703	23.448	24.113	0					35	22	2	0	0	0	0.24848	1	3624	3624		13.906	1.3745	1	89995			55340	2557;12660	31770	31771	67657	67657					0.04161162680134112
VTRAFSFSK	9	Unmodified	_VTRAFSFSK_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-3|ECT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2592163085938	2	521.787641	1041.56073	0.47259	0.00024659	-0.65579	-0.00034218	-0.18321	-9.5594E-05	521.787097952981	23.819	0.77243	23.78	23.534	24.306	-0.038927					40	26	2	0	0	0	0.24289	1	3649	3649		18.146	3.3081	1	94593			55341	2557;12660	31770	31771	67658	67658					0.04161162680134112
VTRAFSPKSL	10	Unmodified	_VTRAFSPKSL_					0	0	0			REV__ENSG00000130749|ENST00000253048|ZC3H4	REV__ENSG00000130749|ENST00000253048|ZC3H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3224487304688	2	553.321848	1104.62914	0.31259	0.00017296	0.475	0.00026283	0.78759	0.00043579	553.3220360017285	28.795	0.49401	28.791	28.599	29.093	-0.0042572					27	16	2	0	0	0	0.11961	1	5093	5093		43.772	1.9328	1	362020	+		55342	15475	31771	31772	67659	67659					0.08101407260005544
VTREKRQR	8	Unmodified	_VTREKRQR_					0	0	0			REV__ENST00000454174.5_1_10:91405109-91408685:+|nuORF	REV__ENST00000454174.5_1_10:91405109-91408685:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2777099609375	2	536.820338	1071.62612	0.55439	0.00029761	1.8977	0.0010187	2.4521	0.0013164	536.8211133853549	40.426	0.69664	40.518	40.284	40.98	0.09267					49	25	3	0	0	0	0.32099	1	8659	8659		19.257	0	1	452520	+		55343	21146	31772	31773	67660	67660					0.09317576925832327
VTREQLPK	8	Unmodified	_VTREQLPK_					0	0	0		ENST00000453744.6_1_4:103718319-103718415:-|nuORF	ENST00000453744.6_1_4:103718319-103718415:-|nuORF	ENST00000453744.6_1_4:103718319-103718415:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.7877502441406	2	485.787641	969.56073	0.37661	0.00018295	-0.057653	-2.8007E-05	0.31896	0.00015495	485.78745064599406	19.761	0.75102	19.705	19.283	20.034	-0.055693					44	26	3	0	0	0	0.34226	1	2330	2330		10.074	1.3285	1	96194			55344	10674	31773	31774	67661	67661					0.07473162680139467
VTREYFAGEKR	11	Unmodified	_VTREYFAGEKR_					0	0	0			REV__nc|ENSG00000150893|Q5SZK8-2|FREM2	REV__nc|ENSG00000150893|Q5SZK8-2|FREM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2495422363281	3	452.573726	1354.69935	0.12791	5.7887E-05	0.54999	0.00024891	0.67789	0.0003068	452.9081477271525	20.048	0.33469	20.048	19.822	20.157	0					20	12	2	0	0	0	0.33146	1	2402	2402		2.2527	0	1	129480	+		55345	16515	31774	31775	67662	67662					0.03618660857796385
VTRFLNTR	8	Unmodified	_VTRFLNTR_					0	0	0		nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1	nc|ENSG00000060749|Q2KHR3|QSER1	nc|ENSG00000060749|Q2KHR3|QSER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.8077392578125	2	503.793258	1005.57196	0.18361	9.2501E-05	0.33775	0.00017016	0.52136	0.00026266	503.7932671594475	26.166	0.80442	26.166	25.925	26.729	0					54	27	3	0	0	0	0.37937	1	4285	4285		21.747	0	1	560020			55346	753	31775	31776	67663	67663					0.06939984774282948
VTRFLNTR	8	Unmodified	_VTRFLNTR_					0	0	0		nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1	nc|ENSG00000060749|Q2KHR3|QSER1	nc|ENSG00000060749|Q2KHR3|QSER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.8078308105469	2	503.793258	1005.57196	0.14829	7.4706E-05	0.21041	0.000106	0.3587	0.00018071	503.7932204428919	26.146	0.64443	26.108	25.902	26.547	-0.038671					53	22	3	0	0	0	0.42077	1	4295	4295		15.847	0	1	588090			55347	753	31775	31776	67664	67664					0.06939984774282948
VTRKPEVV	8	Unmodified	_VTRKPEVV_					0	0	0			REV__ENST00000396326.2_1_10:30807341-30807599:-|nuORF	REV__ENST00000396326.2_1_10:30807341-30807599:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	464.2846374511719	2	464.284734	926.554916	0.058396	2.7112E-05	0.15083	7.0027E-05	0.20922	9.714E-05	464.2846505392792	35.612	0.66438	35.698	35.476	36.14	0.08625					48	23	3	0	0	0	0.41758	1	7170	7170		16.942	1.6938	1	1499800	+		55348	20652	31776	31777	67665	67665					0.08870064168468161
VTRLILAYSLF	11	Unmodified	_VTRLILAYSLF_					0	0	0			REV__ENSG00000278870|ENST00000623849|OR51G1	REV__ENSG00000278870|ENST00000623849|OR51G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.59588623046875	3	432.595579	1294.76491	-0.2273	-9.8328E-05	0.2364	0.00010227	0.0091062	3.9393E-06	432.59547973783856	41.476	1.2634	41.476	40.388	41.651	0					136	46	4	0	0	0	0.45202	1	8899	8899		4.4062	1.7749	1	1987400	+		55349	19351	31777	31778	67666	67666					0.12931682050793825
VTRLILAYSLF	11	Unmodified	_VTRLILAYSLF_					0	0	0			REV__ENSG00000278870|ENST00000623849|OR51G1	REV__ENSG00000278870|ENST00000623849|OR51G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.59576416015625	3	432.595579	1294.76491	-0.19952	-8.6312E-05	0.47008	0.00020336	0.27056	0.00011704	432.59553382867813	41.073	1.1092	41.169	40.313	41.422	0.096622					122	40	4	0	0	0	0.46704	1	8774	8774		2.4348	0.52841	1	1653000	+		55350	19351	31777	31778	67667	67667					0.12931682050793825
VTRPHWRHR	9	Unmodified	_VTRPHWRHR_					0	0	0			REV__PPP1R3C|p.N248Kfs*39|1|0.24|ENSG00000119938|chr10:91630137-91630137|G/-|frameshift_variant	REV__PPP1R3C|p.N248Kfs*39|1|0.24|ENSG00000119938|chr10:91630137-91630137|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5196228027344	3	415.56724	1243.67989	0.27687	0.00011506	1.9936	0.00082847	2.2705	0.00094353	415.5678171026947	29.18	0.58724	29.192	28.944	29.532	0.012266					45	20	3	0	0	0	0.25346	1	5149	5149		7.1017	0	1	228750	+		55351	23290	31778	31779	67668	67668					0.0677979414820129
VTRPLRAA	8	Unmodified	_VTRPLRAA_					0	0	0		ENST00000466861.1_1_21:46233737-46238015:-|nuORF	ENST00000466861.1_1_21:46233737-46238015:-|nuORF	ENST00000466861.1_1_21:46233737-46238015:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7878723144531	2	442.277244	882.539935	0.44302	0.00019594	-0.10123	-4.4771E-05	0.34179	0.00015116	442.2772270993195	36.914	0.14085	36.914	36.844	36.985	0					5	4	2	0	0	0	0.34167	1	7551	7551		11.64	6.4096	1	38470			55352	10816	31779	31780	67669	67669					0.09396617091113058
VTRRHYCYE	9	Unmodified	_VTRRHYCYE_					0	0	0		nc|ENSG00000133401|O15018-2|PDZD2;ENSG00000133401|ENST00000438447|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	nc|ENSG00000133401|O15018-2|PDZD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.250732421875	3	409.529352	1225.56623	-0.23189	-9.4968E-05	4.3545	0.0017833	4.1226	0.0016883	409.5311783412078	14.945	0.36852	14.881	14.7	15.069	-0.064413					26	12	3	0	0	0	0.26145	1	829	829		1.0715	0	1	72026			55353	3710	31780	31781	67670	67670					-0.03753481799708425
VTRRRIRR	8	Unmodified	_VTRRRIRR_					0	0	0		nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3;ENST00000526008.5_1_19:17949989-17958765:-|nuORF;nc|ENSG00000105639|P52333-4|JAK3;ENST00000527031.5_1_19:17947866-17955268:-|nuORF	nc|ENSG00000105639|P52333-2|JAK3	nc|ENSG00000105639|P52333-2|JAK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2825927734375	2	556.865415	1111.71628	0.49088	0.00027336	-0.5373	-0.0002992	-0.046418	-2.5848E-05	556.8651021898161	39.877	0.13435	39.969	39.917	40.051	0.09267					6	4	2	0	0	0	0.344	1	8476	8476		2.5775	0	1	70770			55354	1999	31781	31782	67671	67671					0.16488671044930925
VTRVKEFIFL	10	Unmodified	_VTRVKEFIFL_					0	0	0		ENSG00000176200|ENST00000313253|OR4D11	ENSG00000176200|ENST00000313253|OR4D11	ENSG00000176200|ENST00000313253|OR4D11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.5233154296875	3	417.920174	1250.73869	0.30076	0.00012569	0.51972	0.0002172	0.82048	0.0003429	418.25472839128764	44.222	1.1547	44.291	43.938	45.093	0.068573					90	42	3	0	0	0	0.32015	1	9858	9858		5.0475	3.3052	1	284060			55355	6908	31782	31783	67672	67672					0.123354128793153
VTRVKEFIFL	10	Unmodified	_VTRVKEFIFL_					0	0	0		ENSG00000176200|ENST00000313253|OR4D11	ENSG00000176200|ENST00000313253|OR4D11	ENSG00000176200|ENST00000313253|OR4D11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	417.920174	1250.73869	0.23851	9.9678E-05	0.48359	0.0002021	0.7221	0.00030178	417.9203274135122	44.224	1.3494	44.299	43.935	45.284	0.07505	0.0042781	-2.1394E-05	NaN	5.0475	83	49	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319250			55356	6908	31782	31783							0.123354128793153
VTRVKLHLRK	10	Unmodified	_VTRVKLHLRK_					0	0	0		AluSq2_dup47728|chr15:101493488-101493800:-|1.390206736039434|0.2791420296698466|2.32|524.0|6|2|sense	AluSq2_dup47728|chr15:101493488-101493800:-|1.390206736039434|0.2791420296698466|2.32|524.0|6|2|sense	AluSq2_dup47728|chr15:101493488-101493800:-|1.390206736039434|0.2791420296698466|2.32|524.0|6|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.876220703125	3	417.278696	1248.81426	-0.023047	-9.617E-06	-0.68216	-0.00028465	-0.7052	-0.00029427	417.2782276785713	25.899	0.56845	25.86	25.721	26.29	-0.038671					32	19	2	0	0	0	0.31969	1	4167	4167		3.3196	1.4133	1	95038			55357	36	31783	31784	67673	67673					0.19980434850231177
VTSALKEL	8	Unmodified	_VTSALKEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.75787353515625	2	430.758018	859.501483	0.012627	5.4392E-06	0.026649	1.1479E-05	0.039276	1.6919E-05	430.7578565429643	35.581	0.84735	35.663	35.461	36.308	0.082359					56	30	3	0	0	0	0.17289	1	7152	7152		47.749	3.8904	1	1119800			55358	530	31784	31785	67674	67674					0.06611266665947824
VTSASSIVAT	10	Unmodified	_VTSASSIVAT_					0	0	0			REV__ENST00000463052.5_1_1:29543281-29549713:-|nuORF	REV__ENST00000463052.5_1_1:29543281-29549713:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2557373046875	2	468.25584	934.497126	0.034693	1.6245E-05	-0.61167	-0.00028642	-0.57698	-0.00027017	468.25553037563225	72.914	1.1202	72.968	72.459	73.579	0.053833					59	40	2	0	0	0	0.38233	1	18599	18599		6.7232	0	1	108930	+		55359	21243	31785	31786	67675	67675					0.02725757452367361
VTSAYAASAQP	11	Unmodified	_VTSAYAASAQP_					0	0	0		nc|ENSG00000161031|Q96PD5-2|PGLYRP2	nc|ENSG00000161031|Q96PD5-2|PGLYRP2	nc|ENSG00000161031|Q96PD5-2|PGLYRP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3008422851562	2	533.264196	1064.51384	0.29808	0.00015896	1.245	0.00066391	1.5431	0.00082287	533.2641759092286	24.566	0.53364	24.534	24.203	24.737	-0.03141					38	18	3	0	0	0	0.32905	1	3753	3753		10.151	1.4052	1	111050			55360	12792	31786	31787	67676	67676					-0.015837416616705013
VTSFFDPIK	9	Unmodified	_VTSFFDPIK_					0	0	0			REV__ENST00000373279.5_1_10:71392915-71393320:+|nuORF	REV__ENST00000373279.5_1_10:71392915-71393320:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7743530273438	2	527.2844	1052.55425	0.5647	0.00029776	1.1911	0.00062806	1.7558	0.00092582	527.28510031174	62.683	0.35497	62.683	62.526	62.881	0					17	12	2	0	0	0	0.22061	1	15459	15459		24.021	3.5669	1	154810	+		55361	20433	31787	31788	67677	67677					0.030072247287534992
VTSGRKPNSF	10	Unmodified	_VTSGRKPNSF_					0	0	0		ENSG00000126562|ENST00000246914|WNK4;nc|ENSG00000126562|Q96J92-3|WNK4;nc|ENSG00000126562|Q96J92-2|WNK4	ENSG00000126562|ENST00000246914|WNK4	ENSG00000126562|ENST00000246914|WNK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.7141723632812	2	546.793455	1091.57236	0.34258	0.00018732	-1.5989	-0.00087426	-1.2563	-0.00068694	546.7929278742138	65.015	0.33768	65.104	64.905	65.243	0.088882					14	12	2	0	0	0	0.30079	1	16151	16151		14.838	4.0143	1	131450			55362	3278	31788	31789	67678	67678					0.03023359703456663
VTSHGVSTK	9	Unmodified	_VTSHGVSTK_					0	0	0		nc|ENSG00000169896|P11215-2|ITGAM;ENSG00000169896|ENST00000544665|ITGAM	nc|ENSG00000169896|P11215-2|ITGAM	nc|ENSG00000169896|P11215-2|ITGAM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.7582702636719	2	458.248349	914.482145	-0.096331	-4.4143E-05	0.078654	3.6043E-05	-0.017677	-8.1003E-06	458.2483345751085	22.805	0.68078	22.717	22.484	23.165	-0.087608					51	23	3	0	0	0	0.22188	1	3379	3379		20.454	2.3186	1	246240			55363	6399	31789	31790	67679	67679					0.02148310375048368
VTSKALEL	8	Unmodified	_VTSKALEL_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.96038818359375	2	430.758018	859.501483	0.024261	1.0451E-05	-0.28129	-0.00012117	-0.25703	-0.00011072	430.75782121263	35.703	0.89269	35.703	35.439	36.332	0					59	32	3	0	0	0	0.32099	1	7137	7137		25.399	0	1	1002500			55364	1650	31790	31791	67680	67680					0.06611266665947824
VTSKALEL	8	Unmodified	_VTSKALEL_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.7579345703125	2	430.758018	859.501483	0.012627	5.4392E-06	0.026649	1.1479E-05	0.039276	1.6919E-05	430.7578565429643	35.581	0.84735	35.663	35.461	36.308	0.082359					56	30	3	0	0	0	0.35947	1	7205	7205		24.021	0	1	1119800			55365	1650	31790	31791	67681	67681					0.06611266665947824
VTSKALEL	8	Unmodified	_VTSKALEL_					0	0	0		ENSG00000100979|ENST00000372431|PLTP;nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP	ENSG00000100979|ENST00000372431|PLTP	ENSG00000100979|ENST00000372431|PLTP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.9605407714844	2	430.758018	859.501483	-0.23739	-0.00010226	0.096523	4.1578E-05	-0.14087	-6.0682E-05	430.7579975560685	35.586	0.74173	35.672	35.399	36.14	0.08625					56	26	4	0	0	0	0.27213	1	7193	7193		36.127	0	1	1125000			55366	1650	31790	31791	67682	67682					0.06611266665947824
VTSKAVTEV	9	Unmodified	_VTSKAVTEV_					0	0	0		nc|ENSG00000141985|Q99961-3|SH3GL1;nc|ENSG00000141985|Q99961-2|SH3GL1;SH3GL1|p.L218Wfs*118|1|0.14|ENSG00000141985|chr19:4363446-4363446|G/-|frameshift_variant;ENSG00000141985|ENST00000269886|SH3GL1	nc|ENSG00000141985|Q99961-3|SH3GL1	nc|ENSG00000141985|Q99961-3|SH3GL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2551574707031	2	467.266207	932.517862	0.38244	0.0001787	-1.2908	-0.00060314	-0.90833	-0.00042443	467.265673125138	37.174	0.43759	37.174	36.959	37.397	0					24	15	3	0	0	0	0.23235	1	7604	7604		21.537	0	1	141390			55367	4418	31791	31792	67683	67683					0.04890347832053976
VTSKAVTEV	9	Unmodified	_VTSKAVTEV_					0	0	0		nc|ENSG00000141985|Q99961-3|SH3GL1;nc|ENSG00000141985|Q99961-2|SH3GL1;SH3GL1|p.L218Wfs*118|1|0.14|ENSG00000141985|chr19:4363446-4363446|G/-|frameshift_variant;ENSG00000141985|ENST00000269886|SH3GL1	nc|ENSG00000141985|Q99961-3|SH3GL1	nc|ENSG00000141985|Q99961-3|SH3GL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.5894470214844	2	467.266207	932.517862	0.43755	0.00020445	-0.98477	-0.00046015	-0.54722	-0.0002557	467.2658316968645	37.042	0.32489	37.135	36.951	37.275	0.093018					18	11	2	0	0	0	0.23235	1	7576	7576		21.537	0	1	115410			55368	4418	31791	31792	67684	67684					0.04890347832053976
VTSLHYILFLY	11	Unmodified	_VTSLHYILFLY_					0	0	0			REV__ENST00000328299.3_1_1:77094996-77095116:+|nuORF	REV__ENST00000328299.3_1_1:77094996-77095116:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.7933044433594	3	456.923585	1367.74892	0.40063	0.00018306	2.7266	0.0012458	3.1272	0.0014289	457.2600186872037	33.823	0.96009	33.823	33.233	34.193	0					46	34	2	0	0	0	0.32951	1	6596	6596		10.315	5.9091	1	263140	+		55369	20014	31792	31793	67685	67685					0.07975975813906189
VTSLRSLPK	9	Unmodified	_VTSLRSLPK_					0	0	0		ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	ENSG00000187833|ENST00000409561|C2orf78	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.30322265625	2	500.811116	999.60768	0.51058	0.00025571	0.054514	2.7301E-05	0.5651	0.00028301	500.81107845506347	20.345	0.38951	20.235	19.933	20.322	-0.11003					24	14	2	0	0	0	0.26145	1	2435	2435		2.0598	0	1	181090			55370	7714	31793	31794	67686	67686					0.10786022231275183
VTSLTAGEQGF	11	Unmodified	_VTSLTAGEQGF_					0	0	0		ENST00000482301.1_1_3:49714104-49717481:+|nuORF	ENST00000482301.1_1_3:49714104-49717481:+|nuORF	ENST00000482301.1_1_3:49714104-49717481:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.27978515625	2	555.277303	1108.54005	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.041	1	94.041	93.541	94.541	0								0	0	0	0.37382	1	25068	25068		2.9952	0.41776	1				55371	11043	31794	31795	67687	67687					-0.009874724901919762
VTSLTKVAAF	10	Unmodified	_VTSLTKVAAF_					0	0	0			REV__ENST00000380752.9_1_13:30085169-30085490:-|nuORF	REV__ENST00000380752.9_1_13:30085169-30085490:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2887573242188	2	518.8055	1035.59645	0.74239	0.00038516	-0.86855	-0.00045061	-0.12616	-6.5452E-05	518.8050512642517	54.628	0.51749	54.628	54.374	54.891	0					58	18	4	0	0	0	0.27059	1	12955	12955		24.021	1.2843	1	1025700	+		55372	20555	31795	31796	67688	67688					0.08007200137126347
VTSNTKLL	8	Unmodified	_VTSNTKLL_					0	0	0			REV__ENST00000433048.1_1_7:109599683-109600109:-|nuORF	REV__ENST00000433048.1_1_7:109599683-109600109:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2633361816406	2	438.263468	874.512382	-0.22393	-9.8139E-05	-0.46498	-0.00020378	-0.68891	-0.00030192	438.26343056970643	38.492	1.4463	38.492	38.149	39.595	0					130	51	5	0	0	0	0.34319	1	8115	8115		0.69038	0	1	1483300	+		55373	20961	31796	31797	67689	67689					0.07010669040232642
VTSRKGEVV	9	Unmodified	_VTSRKGEVV_					0	0	0		ENST00000475943.5_1_X:154013074-154033702:-|nuORF	ENST00000475943.5_1_X:154013074-154033702:-|nuORF	ENST00000475943.5_1_X:154013074-154033702:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7850036621094	2	487.785099	973.555644	0.52802	0.00025756	-0.12635	-6.1631E-05	0.40167	0.00019593	487.78500013923133	20.544	0.56982	20.434	20.238	20.808	-0.11003					39	20	3	0	0	0	0.2719	1	2532	2532		13.042	2.2185	1	302680			55374	10941	31797	31798	67690	67690					0.06780858817523949
VTSRRWLRGE	10	Unmodified	_VTSRRWLRGE_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;FRYL|p.E2601Dfs*12|1|0.03|ENSG00000075539|chr4:48515162-48515163|-/TACTTTCA|frameshift_variant	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2432556152344	3	420.570427	1258.68945	-0.17885	-7.5219E-05	-0.42977	-0.00018075	-0.60862	-0.00025597	420.57010669773223	14.954	0.39182	14.845	14.676	15.068	-0.10981					18	13	2	0	0	0	0.31746	1	898	898		10.315	10.315	1	71985			55375	1048	31798	31799	67691	67691					0.07045517643086896
VTSRTRTKF	9	Unmodified	_VTSRTRTKF_					0	0	0			REV__ENST00000438282.6_1_3:2613181-3030164:+|nuORF	REV__ENST00000438282.6_1_3:2613181-3030164:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7452392578125	2	548.317097	1094.61964	0.54315	0.00029782	1.1018	0.00060411	1.6449	0.00090193	548.3173418001498	39.872	0.27733	39.972	39.868	40.146	0.099407					21	9	3	0	0	0	0.25526	1	8496	8496		4.3292	0	1	246630	+		55376	16247	31799	31800	67692	67692					0.07611638974481139
VTSSNWVVRQ	10	Unmodified	_VTSSNWVVRQ_					0	0	0			REV__nc|ENSG00000101040|Q9ULU4-12|ZMYND8	REV__nc|ENSG00000101040|Q9ULU4-12|ZMYND8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3114624023438	2	588.312012	1174.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.529	1	28.529	28.029	29.029	0								0	0	0	0.3726	1	4988	4988		5.2969	0	1		+		55377	22915	31800	31801	67693	67693					0.029150312492447483
VTSSSFTESTF	11	Unmodified	_VTSSSFTESTF_					0	0	0		ENSG00000196865|ENST00000369301|NHLRC2;nc|ENSG00000196865|Q8NBF2-2|NHLRC2	ENSG00000196865|ENST00000369301|NHLRC2	ENSG00000196865|ENST00000369301|NHLRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.7725219726562	2	596.772051	1191.52955	0.49663	0.00029638	0.73321	0.00043756	1.2298	0.00073394	596.7722459661334	71.594	1.256	71.567	71.262	72.518	-0.027275					111	44	3	0	0	0	0.32017	1	18274	18274		20.415	4.2654	1	1572500			55378	7907	31801	31802	67694	67694					-0.05855499935273656
VTSTESMDFLK	11	Oxidation (M)	_VTSTESM(Oxidation (M))DFLK_		VTSTESM(1)DFLK		VTSTESM(120)DFLK	0	0	1		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.3028564453125	2	637.302661	1272.59077	0.59236	0.00037751	-0.35542	-0.00022651	0.23694	0.000151	637.3025508674508	37.704	0.61495	37.704	37.477	38.092	0					54	21	4	0	0	0	1.2519E-05	2	7792	7792;7852		121.93	96.939	1	851690			55379	1112	31802	31803	67695;67696	67695		136			-0.03462311227508508
VTSTESMDFLK	11	Oxidation (M)	_VTSTESM(Oxidation (M))DFLK_		VTSTESM(1)DFLK		VTSTESM(100)DFLK	0	0	1		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.3028564453125	2	637.302661	1272.59077	0.60638	0.00038645	-0.29452	-0.0001877	0.31186	0.00019875	637.3024610921882	37.623	0.68551	37.71	37.412	38.098	0.087406					64	24	4	0	0	0	0.00059316	2	7789	7742;7789		102.55	77.558	1	989110			55380	1112	31802	31803	67697;67698	67698		136			-0.03462311227508508
VTSTESMDFLK	11	Oxidation (M)	_VTSTESM(Oxidation (M))DFLK_		VTSTESM(1)DFLK		VTSTESM(120)DFLK	0	0	1		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.3028564453125	2	637.302661	1272.59077	0.58922	0.00037551	-0.18882	-0.00012033	0.4004	0.00025518	637.3025111004022	37.539	0.89439	37.632	37.395	38.29	0.093014					74	32	4	0	0	0	1.2519E-05	2	7725	7725;7773		121.93	121.93	1	963330			55381	1112	31802	31803	67699;67700	67699		136			-0.03462311227508508
VTSTKLNL	8	Unmodified	_VTSTKLNL_					0	0	0			REV__nc|ENSG00000257923|P39880-3|CUX1	REV__nc|ENSG00000257923|P39880-3|CUX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.2632751464844	2	438.263468	874.512382	-0.22393	-9.8139E-05	-0.46498	-0.00020378	-0.68891	-0.00030192	438.26343056970643	38.492	1.4463	38.492	38.149	39.595	0					130	51	5	0	0	0	0.46461	1	8015	8015		0.79363	0	1	1483300	+		55382	23221	31803	31804	67701	67701					0.07010669040209905
VTSTKLNL	8	Unmodified	_VTSTKLNL_					0	0	0			REV__nc|ENSG00000257923|P39880-3|CUX1	REV__nc|ENSG00000257923|P39880-3|CUX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.26324462890625	2	438.263468	874.512382	0.15746	6.9009E-05	-0.3241	-0.00014204	-0.16664	-7.3031E-05	438.26323893807177	38.529	1.9678	38.627	38.176	40.144	0.097527					108	70	2	0	0	0	0.45851	1	8143	8143		2.8892	0	1	1240900	+		55383	23221	31803	31804	67702	67702					0.07010669040209905
VTSTRLKIWL	10	Unmodified	_VTSTRLKIWL_					0	0	0			REV__ENST00000481169.5_1_3:148896402-148897410:-|nuORF	REV__ENST00000481169.5_1_3:148896402-148897410:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.9067687988281	3	406.251924	1215.73394	0.026025	1.0573E-05	0.17091	6.9434E-05	0.19694	8.0007E-05	406.2520453121576	36.179	0.42558	36.179	35.932	36.358	0					27	15	2	0	0	0	0.31364	1	7332	7332		5.0475	1.2016	1	305750	+		55384	21485	31804	31805	67703	67703					0.1347052873654775
VTSTVFLYF	9	Unmodified	_VTSTVFLYF_					0	0	0		ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	ENSG00000155957|ENST00000358230|TMBIM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7870483398438	2	538.786776	1075.559	0.66764	0.00035972	-2.1847	-0.0011771	-1.5171	-0.00081738	538.7857495288736	86.219	0.8518	86.219	85.876	86.728	0					70	33	3	0	0	0	0.1659	1	22761	22761		28.487	1.6032	1	249630			55385	5205	31805	31806	67704	67704					0.024241088715143633
VTSVMMLLQR	10	Unmodified	_VTSVMMLLQR_					0	0	0		nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-8|CASP12;nc|ENSG00000204403|Q6UXS9-6|CASP12	nc|ENSG00000204403|Q6UXS9-3|CASP12	nc|ENSG00000204403|Q6UXS9-3|CASP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.324951171875	2	589.325219	1176.63589	0.13173	7.7631E-05	-0.60188	-0.00035471	-0.47016	-0.00027707	589.3247694190485	15.55	0.32479	15.44	15.285	15.61	-0.10981					19	10	2	0	0	0	0.38515	1	1088	1088		6.2058	0.9089	1	66719			55386	12908	31806	31807	67705	67705					0.05463260824694771
VTTAEREI	8	Unmodified	_VTTAEREI_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.7480773925781	2	459.748182	917.481811	-0.13481	-6.1979E-05	-0.69025	-0.00031734	-0.82506	-0.00037932	459.74821152904394	18.867	0.38875	18.867	18.646	19.034	0					23	13	2	0	0	0	0.44569	1	2063	2063		7.2892	0	1	39898			55387	2147	31807	31808	67706	67706					0.01976890655180341
VTTAEREI	8	Unmodified	_VTTAEREI_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	459.748182	917.481811	-0.074466	-3.4236E-05	-1.6687	-0.00076719	-1.7432	-0.00080143	459.7478883135032	19.011	0.32388	18.953	18.788	19.112	-0.058174	0.043147	-0.00057442	NaN	7.2892	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27846			55388	2147	31807	31808							0.01976890655180341
VTTDDRLPCL	10	Unmodified	_VTTDDRLPCL_					0	0	0		nc|ENSG00000142330|Q9HC96-6|CAPN10;nc|ENSG00000142330|Q9HC96-5|CAPN10;nc|ENSG00000142330|Q9HC96-4|CAPN10;nc|ENSG00000142330|Q9HC96-3|CAPN10;nc|ENSG00000142330|Q9HC96-2|CAPN10;ENSG00000142330|ENST00000391984|CAPN10	nc|ENSG00000142330|Q9HC96-6|CAPN10	nc|ENSG00000142330|Q9HC96-6|CAPN10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.8074340820312	2	566.786981	1131.55941	0.70091	0.00039726	2.1106	0.0011962	2.8115	0.0015935	566.7884116655426	32.2	0.57941	32.246	32.057	32.637	0.046425					48	20	3	0	0	0	0.3258	1	6088	6088		17.113	0	1	283780			55389	4438	31808	31809	67707	67707					-0.0011083947094903124
VTTDKLLGP	9	Unmodified	_VTTDKLLGP_					0	0	0		ENST00000478711.1_1_6:46854737-46856150:-|nuORF	ENST00000478711.1_1_6:46854737-46856150:-|nuORF	ENST00000478711.1_1_6:46854737-46856150:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	472.2764892578125	2	472.276575	942.538597	0.12344	5.8297E-05	-0.56211	-0.00026547	-0.43867	-0.00020717	472.27635860880184	30.978	0.79459	31.005	30.638	31.433	0.027157					64	28	4	0	0	0	0.12846	1	5718	5718		34.102	1.3168	1	779840			55390	10978	31809	31810	67708	67708					0.0650293821172454
VTTGGMVLK	9	Oxidation (M)	_VTTGGM(Oxidation (M))VLK_		VTTGGM(1)VLK		VTTGGM(63)VLK	0	0	1		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	461.2573547363281	2	461.257328	920.500103	-0.181	-8.3489E-05	0.41109	0.00018962	0.23009	0.00010613	461.2574663319392	22.792	1.0877	22.792	22.331	23.419	0					108	37	4	0	0	0	0.023967	1	3223	3223		62.573	22.615	1	652690			55391	6717	31810	31811	67709	67709		769			0.036673093055583195
VTTGGMVLK	9	Oxidation (M)	_VTTGGM(Oxidation (M))VLK_		VTTGGM(1)VLK		VTTGGM(54)VLK	0	0	1		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	461.2574462890625	2	461.257328	920.500103	-0.13766	-6.3497E-05	0.46829	0.000216	0.33063	0.00015251	461.2574472250553	22.937	1.389	22.85	22.352	23.741	-0.087608					118	49	3	0	0	0	0.047483	1	3220	3220		53.833	7.8118	1	758700			55392	6717	31810	31811	67710	67710		769			0.036673093055583195
VTTGGMVLK	9	Oxidation (M)	_VTTGGM(Oxidation (M))VLK_		VTTGGM(1)VLK		VTTGGM(48)VLK	0	0	1		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	461.25738525390625	2	461.257328	920.500103	0.053485	2.467E-05	0.30045	0.00013859	0.35394	0.00016326	461.2573846159802	22.912	1.1193	22.867	22.409	23.528	-0.044867					110	39	4	0	0	0	0.063853	1	3228	3228		47.749	7.7914	1	692420			55393	6717	31810	31811	67711	67711		769			0.036673093055583195
VTTGPIGPIGP	11	Unmodified	_VTTGPIGPIGP_					0	0	0			REV__nc|ENSG00000158813|Q92838-9|EDA	REV__nc|ENSG00000158813|Q92838-9|EDA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2770690917969	2	504.78985	1007.56515	0.37239	0.00018798	-3.1474	-0.0015888	-2.775	-0.0014008	504.7883753036587	53.984	0.42361	54.041	53.869	54.293	0.056255					28	15	2	0	0	0	0.37965	1	12801	12801		13.906	0	1	204650	+		55394	23046	31811	31812	67712	67712					0.061666271030503594
VTTITSRTLK	10	Unmodified	_VTTITSRTLK_					0	0	0		ENST00000519610.1_1_5:150534726-150534804:-|nuORF	ENST00000519610.1_1_5:150534726-150534804:-|nuORF	ENST00000519610.1_1_5:150534726-150534804:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3408203125	2	560.340238	1118.66592	0.32892	0.00018431	0.24906	0.00013956	0.57798	0.00032387	560.3402625071827	92.43	1.9632	92.519	92.085	94.048	0.089203					368	158	4	0	0	0	0.39935	1	24476	24476		3.5965	3.5965	1	3278800			55395	11461	31812	31813	67713	67713					0.11133659085885483
VTTITSRTLK	10	Unmodified	_VTTITSRTLK_					0	0	0		ENST00000519610.1_1_5:150534726-150534804:-|nuORF	ENST00000519610.1_1_5:150534726-150534804:-|nuORF	ENST00000519610.1_1_5:150534726-150534804:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.340238	1118.66592	0.22583	0.00012654	0.28124	0.00015759	0.50707	0.00028413	560.3402692386995	92.451	1.6291	92.451	92.096	93.725	0	-0.034166	1.7934E-05	NaN	3.5965	345	137	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3379800			55396	11461	31812	31813							0.11133659085885483
VTTIWVDL	8	Unmodified	_VTTIWVDL_					0	0	0		ENST00000481107.1_1_17:15928260-15930833:+|nuORF	ENST00000481107.1_1_17:15928260-15930833:+|nuORF	ENST00000481107.1_1_17:15928260-15930833:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7658386230469	2	473.765843	945.517133	0.20481	9.7031E-05	0.11284	5.346E-05	0.31765	0.00015049	473.76575092137773	63.474	1.2495	63.474	63.093	64.342	0					101	45	4	0	0	0	0.23581	1	15690	15690		38.151	0	1	3285200			55397	11020	31813	31814	67714	67714					0.042195531829861466
VTTKWQHLG	9	Unmodified	_VTTKWQHLG_					0	0	0			REV__ENSG00000168904|ENST00000301981|LRRC28	REV__ENSG00000168904|ENST00000301981|LRRC28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.2671508789062	2	535.293091	1068.57163	0.38276	0.00020489	-0.10408	-5.5711E-05	0.27868	0.00014918	535.2929575409393	38.278	0.49003	38.369	38.183	38.673	0.090881					23	13	2	0	0	0	0.2451	1	8034	8034		15.847	1.0089	1	163760	+		55398	17487	31814	31815	67715	67715					0.04008565054414248
VTTLVITL	8	Unmodified	_VTTLVITL_					0	0	0			REV__ENSG00000143515|ENST00000368489|ATP8B2	REV__ENSG00000143515|ENST00000368489|ATP8B2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.2647705078125	2	430.278586	858.54262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.104	1	67.087	66.587	67.587	-0.016296								0	0	0	0.37724	1	16820	16820		2.3027	0	1		+		55399	16186	31815	31816	67716	67716					0.10769027705407552
VTTLVQAIR	9	Unmodified	_VTTLVQAIR_					0	0	0		ENSG00000173890|ENST00000355897|GPR160	ENSG00000173890|ENST00000355897|GPR160	ENSG00000173890|ENST00000355897|GPR160	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.8293151855469	2	500.811116	999.60768	0.31773	0.00015912	0.98061	0.0004911	1.2983	0.00065022	500.8117277418296	38.247	0.14282	38.344	38.235	38.378	0.097527					7	4	2	0	0	0	0.25202	1	7923	7923		3.5965	0	1	128560			55400	6758	31816	31817	67717	67717					0.10786022231275183
VTTLWFLNL	9	Unmodified	_VTTLWFLNL_					0	0	0		ENSG00000183671|ENST00000621141|CMKLR2	ENSG00000183671|ENST00000621141|CMKLR2	ENSG00000183671|ENST00000621141|CMKLR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.269775390625	2	553.815867	1105.61718	0.46178	0.00025574	-0.40263	-0.00022298	0.059155	3.2761E-05	553.8172699271357	63.524	0.60271	63.524	63.364	63.967	0					34	21	2	0	0	0	0.20651	1	15728	15728		14.838	0	1	208370			55401	7388	31817	31818	67718	67718					0.06859790516773501
VTTMSRSLT	9	Unmodified	_VTTMSRSLT_					0	0	0			REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2548522949219	2	498.263142	994.51173	0.50377	0.00025101	-3.3291	-0.0016588	-2.8254	-0.0014078	498.26143099023363	36.043	0.48852	36.125	35.771	36.259	0.082355					35	17	3	0	0	0	0.17787	1	7280	7280		26.884	8.7373	1	241700	+		55402	15495	31818	31819	67719	67719					0.014255063288715064
VTTMSRSLT	9	Unmodified	_VTTMSRSLT_					0	0	0			REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	498.263142	994.51173	0.49328	0.00024578	-3.314	-0.0016512	-2.8207	-0.0014055	498.26140320423207	36.032	0.45605	36.032	35.8	36.256	0	-0.013097	4.4319E-05	NaN	26.884	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320240	+		55403	15495	31818	31819							0.014255063288715064
VTTMSRSLT	9	Unmodified	_VTTMSRSLT_					0	0	0			REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	498.263142	994.51173	0.50377	0.00025101	-3.3291	-0.0016588	-2.8254	-0.0014078	498.26143099023363	36.043	0.48852	36.125	35.771	36.259	0.082355	0.079764	2.9236E-05	NaN	26.884	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241700	+		55404	15495	31818	31819							0.014255063288715064
VTTMSRSLT	9	Unmodified	_VTTMSRSLT_					0	0	0			REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	REV__nc|ENSG00000131018|Q8NF91-4|SYNE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.263142	994.51173	0.52331	0.00026075	-3.4374	-0.0017127	-2.9141	-0.001452	498.2613822530737	35.892	0.42999	35.979	35.79	36.22	0.08625	-0.066667	-7.8644E-05	NaN	26.884	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264030	+		55405	15495	31818	31819							0.014255063288715064
VTTMSVTAW	9	Unmodified	_VTTMSVTAW_					0	0	0			REV__ENSG00000156486|ENST00000287042|KCNS2	REV__ENSG00000156486|ENST00000287042|KCNS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7886047363281	2	498.24696	994.479368	0.12021	5.9893E-05	-0.55571	-0.00027688	-0.4355	-0.00021699	498.24643372062593	14.762	0.28716	14.657	14.565	14.853	-0.10466					15	9	2	0	0	0	0.25988	1	874	874		3.9444	0	1	52155	+		55406	16749	31819	31820	67720	67720					-0.018092810741109133
VTTMSVTAW	9	Unmodified	_VTTMSVTAW_					0	0	0			REV__ENSG00000156486|ENST00000287042|KCNS2	REV__ENSG00000156486|ENST00000287042|KCNS2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	498.24696	994.479368	0.037074	1.8472E-05	-0.73431	-0.00036587	-0.69724	-0.0003474	498.2463349431721	14.826	0.30812	14.762	14.589	14.898	-0.064414	0.052341	-8.632E-05	NaN	3.9444	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29040	+		55407	16749	31819	31820							-0.018092810741109133
VTTPLRAA	8	Unmodified	_VTTPLRAA_					0	0	0			REV__ENSG00000137207|ENST00000372422|YIPF3	REV__ENSG00000137207|ENST00000372422|YIPF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.8834533691406	2	414.750527	827.486502	-0.38716	-0.00016057	0.1976	8.1954E-05	-0.18956	-7.8619E-05	414.7505549973721	27.939	0.39145	27.939	27.789	28.181	0					19	13	2	0	0	0	0.34185	1	4881	4881		5.7604	0	1	90370	+		55408	15850	31820	31821	67721	67721					0.06585819588599406
VTTPLRAA	8	Unmodified	_VTTPLRAA_					0	0	0			REV__ENSG00000137207|ENST00000372422|YIPF3	REV__ENSG00000137207|ENST00000372422|YIPF3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	414.750527	827.486502	-0.045973	-1.9068E-05	-0.39713	-0.00016471	-0.4431	-0.00018378	414.7502560683874	27.873	0.5151	27.869	27.763	28.278	-0.0042572	-0.053127	-0.0001093	NaN	2.5775	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89249	+		55409	15850	31820	31821							0.06585819588599406
VTTPLRAA	8	Unmodified	_VTTPLRAA_					0	0	0			REV__ENSG00000137207|ENST00000372422|YIPF3	REV__ENSG00000137207|ENST00000372422|YIPF3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	414.750527	827.486502	-0.18851	-7.8183E-05	-0.61504	-0.00025509	-0.80354	-0.00033327	414.7503093223712	27.959	0.33995	27.959	27.764	28.104	0.0004673	0.036713	-0.00029005	NaN	2.5775	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90392	+		55410	15850	31820	31821							0.06585819588599406
VTTPTPPTVG	10	Unmodified	_VTTPTPPTVG_					0	0	0		nc|ENSG00000130643|Q9NYX4-3|CALY	nc|ENSG00000130643|Q9NYX4-3|CALY	nc|ENSG00000130643|Q9NYX4-3|CALY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.255615234375	2	485.266207	968.517862	-0.1551	-7.5265E-05	0.29392	0.00014263	0.13882	6.7365E-05	485.2661124751299	38.903	0.33864	38.903	38.649	38.988	0					17	11	3	0	0	0	0.27059	1	8173	8173		24.021	4.7636	1	139650			55411	12698	31821	31822	67722	67722					0.032343478320512986
VTTPTPPTVG	10	Unmodified	_VTTPTPPTVG_					0	0	0		nc|ENSG00000130643|Q9NYX4-3|CALY	nc|ENSG00000130643|Q9NYX4-3|CALY	nc|ENSG00000130643|Q9NYX4-3|CALY	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.2557678222656	2	485.266207	968.517862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.035	1	39.128	38.628	39.628	0.09267								0	0	0	0.33945	1	8196	8196		19.257	4.4187	1				55412	12698	31821	31822	67723	67723					0.032343478320512986
VTTRFILL	8	Unmodified	_VTTRFILL_					0	0	0		ENSG00000197532|ENST00000641622|OR6Y1	ENSG00000197532|ENST00000641622|OR6Y1	ENSG00000197532|ENST00000641622|OR6Y1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2819519042969	2	481.805303	961.596052	0.3695	0.00017803	2.6714	0.0012871	3.0409	0.0014651	481.8071592908689	36.635	0.13963	36.723	36.595	36.734	0.08741					6	4	2	0	0	0	0.34167	1	7440	7440		11.64	3.047	1	49238			55413	7972	31822	31823	67724	67724					0.1137182520794795
VTTRLLIS	8	Unmodified	_VTTRLLIS_					0	0	0		nc|ENSG00000103642|P83111-2|LACTB;ENSG00000103642|ENST00000261893|LACTB	nc|ENSG00000103642|P83111-2|LACTB	nc|ENSG00000103642|P83111-2|LACTB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.25421142578125	2	451.78711	901.559667	-0.078062	-3.5268E-05	0.40388	0.00018247	0.32582	0.0001472	451.7872426566637	14.863	0.3679	14.753	14.587	14.955	-0.10981					18	12	2	0	0	0	0.34337	1	821	821		5.2307	0	1	98445			55414	1847	31823	31824	67725	67725					0.10494948311247754
VTTRRNPVL	9	Unmodified	_VTTRRNPVL_					0	0	0			REV__nc|ENSG00000180071|Q8IVF6-2|ANKRD18A	REV__nc|ENSG00000180071|Q8IVF6-2|ANKRD18A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3200073242188	2	528.31964	1054.62473	0.43049	0.00022744	-0.011617	-6.1374E-06	0.41888	0.0002213	528.3195713188496	26.934	0.8878	26.934	26.673	27.561	0					78	30	3	0	0	0	0.22188	1	4476	4476		20.454	2.3073	1	697200	+		55415	23111	31824	31825	67726	67726					0.09959942837076596
VTTSYPGVL	9	Unmodified	_VTTSYPGVL_					0	0	0			REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.7554016113281	2	468.755475	935.496398	-0.21326	-9.9968E-05	0.38233	0.00017922	0.16907	7.9251E-05	468.7555542888781	65.374	0.923	65.463	65.19	66.113	0.088882					66	33	4	0	0	0	0.12846	1	16332	16332		44.407	8.3628	1	790200	+		55416	14323	31825	31826	67727	67727					0.026069628033383196
VTTSYPGVL	9	Unmodified	_VTTSYPGVL_					0	0	0			REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.7554626464844	2	468.755475	935.496398	0.23447	0.00010991	-0.072524	-3.3996E-05	0.16195	7.5913E-05	468.75538121795745	65.493	0.72014	65.482	65.201	65.922	-0.011337					62	25	3	0	0	0	0.12846	1	16319	16319		44.407	4.4497	1	818910	+		55417	14323	31825	31826	67728	67728					0.026069628033383196
VTTTQSKI	8	Unmodified	_VTTTQSKI_					0	0	0		ENSG00000182141|ENST00000356929|ZNF708	ENSG00000182141|ENST00000356929|ZNF708	ENSG00000182141|ENST00000356929|ZNF708	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.2533874511719	2	439.2531	876.491647	-0.03477	-1.5273E-05	0.39182	0.00017211	0.35705	0.00015683	439.2531993610808	16.429	0.5357	16.429	16.184	16.72	0					51	18	4	0	0	0	0.35947	1	1310	1310		24.021	0	1	257900			55418	7270	31826	31827	67729	67729					0.04846078660580133
VTTTVTGAK	9	Unmodified	_VTTTVTGAK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000417868.1_1_1:153825491-153825668:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.25323486328125	2	439.2531	876.491647	-0.12949	-5.688E-05	0.54013	0.00023725	0.41064	0.00018037	439.25325658073007	16.548	0.61241	16.434	16.191	16.803	-0.11434					48	21	3	0	0	0	0.13296	1	1352	1352		33.445	2.8084	1	300870			55419	4787	31827	31828	67730	67730					0.048460786605687645
VTTTVTGAK	9	Unmodified	_VTTTVTGAK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000417868.1_1_1:153825491-153825668:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.2532653808594	2	439.2531	876.491647	0.061699	2.7102E-05	0.44347	0.0001948	0.50517	0.0002219	439.25319675683	16.518	0.49419	16.456	16.235	16.729	-0.062532					45	16	4	0	0	0	0.12279	2	1341	1341;1389		34.932	26.268	1	297690			55420	4787	31827	31828	67731;67732	67731					0.048460786605687645
VTTTVTGAK	9	Unmodified	_VTTTVTGAK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000417868.1_1_1:153825491-153825668:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	439.2531	876.491647	-0.03477	-1.5273E-05	0.39182	0.00017211	0.35705	0.00015683	439.2531993610808	16.429	0.5357	16.429	16.184	16.72	0	-0.010779	-7.3216E-05	NaN	34.932	51	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257900			55421	4787	31827	31828							0.048460786605687645
VTTTVTGAK	9	Unmodified	_VTTTVTGAK_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;ENST00000417868.1_1_1:153825491-153825668:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	439.2531	876.491647	-0.12949	-5.688E-05	0.54013	0.00023725	0.41064	0.00018037	439.25325658073007	16.548	0.61241	16.434	16.191	16.803	-0.11434	-0.0055136	5.7077E-05	NaN	34.932	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300870			55422	4787	31827	31828							0.048460786605687645
VTTVKGVIK	9	Unmodified	_VTTVKGVIK_					0	0	0		nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;ENST00000481260.1_1_9:134504569-134518759:-|nuORF	nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.75274658203125	2	472.810585	943.606617	-0.051765	-2.4475E-05	-0.12241	-5.7876E-05	-0.17417	-8.2351E-05	472.81043207940144	26.081	0.39587	26.081	25.875	26.271	0					22	13	2	0	0	0	0.23784	1	4267	4267		19.257	2.1441	1	94637			55423	2119	31828	31829	67733	67733					0.13255807862378788
VTTVKGVIK	9	Unmodified	_VTTVKGVIK_					0	0	0		nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;ENST00000481260.1_1_9:134504569-134518759:-|nuORF	nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	472.810585	943.606617	-0.078939	-3.7323E-05	-0.62741	-0.00029664	-0.70635	-0.00033397	472.8101213771306	25.738	0.22717	25.7	25.556	25.783	-0.038671	-0.15889	-0.00034984	NaN	19.257	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75923			55424	2119	31828	31829							0.13255807862378788
VTTVKGVIK	9	Unmodified	_VTTVKGVIK_					0	0	0		nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;ENST00000481260.1_1_9:134504569-134518759:-|nuORF	nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	472.810585	943.606617	0.018208	8.609E-06	-0.2497	-0.00011806	-0.23149	-0.00010945	472.8103228348099	25.817	0.31473	25.794	25.552	25.867	-0.022238	-0.064127	7.3256E-06	NaN	19.257	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96494			55425	2119	31828	31829							0.13255807862378788
VTTWDPDLCLI	11	Unmodified	_VTTWDPDLCLI_					0	0	0		ENST00000460791.1_1_X:102337106-102338370:-|nuORF;nc|ENSG00000147206|Q9H4D5-2|NXF3	ENST00000460791.1_1_X:102337106-102338370:-|nuORF	ENST00000460791.1_1_X:102337106-102338370:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.2602233886719	3	425.881168	1274.62167	-0.32496	-0.0001384	-2.1612	-0.0009204	-2.4861	-0.0010588	425.88028239092023	25.31	0.51	25.254	24.972	25.482	-0.055931					22	17	2	0	0	0	0.33296	1	3970	3970		2.6312	1.5215	1	47844			55426	10737	31829	31830	67734	67734					-0.004651131225955396
VTTWPPQLF	9	Unmodified	_VTTWPPQLF_					0	0	0			REV__nc|ENSG00000143297|Q96RD9-2|FCRL5	REV__nc|ENSG00000143297|Q96RD9-2|FCRL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.8212280273438	2	544.792392	1087.57023	0.53652	0.00029229	-0.76424	-0.00041635	-0.22772	-0.00012406	544.7919231765295	65.419	2.9459	65.419	64.13	67.076	0					179	106	2	0	0	0	0.11486	1	16670	16670		39.957	9.7325	1	309890	+		55427	16159	31830	31831	67735	67735					0.029949309656331025
VTTWPPQLF	9	Unmodified	_VTTWPPQLF_					0	0	0			REV__nc|ENSG00000143297|Q96RD9-2|FCRL5	REV__nc|ENSG00000143297|Q96RD9-2|FCRL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.8212890625	2	544.792392	1087.57023	0.57226	0.00031176	-0.90688	-0.00049406	-0.33462	-0.0001823	544.7918678139933	65.117	2.9368	65.206	64.087	67.023	0.088882					160	107	2	0	0	0	0.1524	1	16612	16612		39.957	3.9131	1	397590	+		55428	16159	31830	31831	67736	67736					0.029949309656331025
VTTWPPQLF	9	Unmodified	_VTTWPPQLF_					0	0	0			REV__nc|ENSG00000143297|Q96RD9-2|FCRL5	REV__nc|ENSG00000143297|Q96RD9-2|FCRL5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3172607421875	2	544.792392	1087.57023	0.66973	0.00036486	0.77763	0.00042365	1.4474	0.00078851	545.2947913843017	89.059	2.1296	89.149	87.373	89.503	0.090561					171	105	2	0	0	0	0.14099	1	23025	23025		42.095	1.646	1	266120	+		55429	16159	31830	31831	67737	67737					0.029949309656331025
VTTWPPQLF	9	Unmodified	_VTTWPPQLF_					0	0	0			REV__nc|ENSG00000143297|Q96RD9-2|FCRL5	REV__nc|ENSG00000143297|Q96RD9-2|FCRL5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	544.792392	1087.57023	0.575	0.00031326	0.61957	0.00033754	1.1946	0.00065079	544.7921704842703	89.164	1.3205	89.164	88.545	89.866	0	0.0071188	-9.0202E-05	NaN	42.095	96	72	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163730	+		55430	16159	31830	31831							0.029949309656331025
VTVADHIQK	9	Unmodified	_VTVADHIQK_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.25616455078125	2	505.785099	1009.55564	0.52746	0.00026678	-1.4818	-0.00074948	-0.95436	-0.0004827	505.78417417250574	21.223	0.31576	21.113	20.95	21.266	-0.11003					14	10	2	0	0	0	0.25689	1	2742	2742		7.609	0	1	36465			55431	7248	31831	31832	67738	67738					0.05124858817521272
VTVAPILATN	10	Unmodified	_VTVAPILATN_					0	0	0		SAP130|p.A352V|1|0.05|ENSG00000136715|chr2:128000347-128000347|G/A|missense_variant	SAP130|p.A352V|1|0.05|ENSG00000136715|chr2:128000347-128000347|G/A|missense_variant	SAP130|p.A352V|1|0.05|ENSG00000136715|chr2:128000347-128000347|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.25299072265625	2	499.797675	997.580796	0.17896	8.9442E-05	0.44993	0.00022487	0.62889	0.00031432	499.797760299832	61.348	0.54469	61.348	61.052	61.597	0					28	20	2	0	0	0	0.28434	1	15144	15144		19.257	3.4098	1	383540			55432	23374	31832	31833	67739	67739					0.08190913620092033
VTVDDSAEFK	10	Unmodified	_VTVDDSAEFK_					0	0	0		ROBO1|p.H1098Tfs*33|1|0.04|ENSG00000169855|chr3:78635854-78635855|-/T|frameshift_variant;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1	ROBO1|p.H1098Tfs*33|1|0.04|ENSG00000169855|chr3:78635854-78635855|-/T|frameshift_variant	ROBO1|p.H1098Tfs*33|1|0.04|ENSG00000169855|chr3:78635854-78635855|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7697143554688	2	555.769311	1109.52407	0.15785	8.7731E-05	0.42744	0.00023756	0.58529	0.00032529	555.7696206088358	69.333	0.59457	69.311	69.026	69.621	-0.022087					58	20	4	0	0	0	0.35231	1	17549	17549		12.241	1.4167	1	900110			55433	6392	31833	31834	67740	67740					-0.026311787270969944
VTVDEVSVRI	10	Unmodified	_VTVDEVSVRI_					0	0	0			REV__nc|ENSG00000132670|P18433-6|PTPRA	REV__nc|ENSG00000132670|P18433-6|PTPRA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8168334960938	2	558.816596	1115.61864	0.40963	0.00022891	-0.41626	-0.00023261	-0.0066272	-3.7034E-06	558.8163496495373	19.972	0.73888	19.856	19.514	20.253	-0.11592					75	25	4	0	0	0	0.37133	1	2327	2327		8.7454	0	1	663680	+		55434	15585	31834	31835	67741	67741					0.06545379814906482
VTVDPKYHPK	10	Unmodified	_VTVDPKYHPK_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.32666015625	2	592.327131	1182.63971	0.3741	0.00022159	-1.7551	-0.0010396	-1.381	-0.00081799	592.3260061162625	20.052	0.82276	20.052	19.6	20.423	0					57	30	3	0	0	0	0.22295	1	2385	2385		29.841	8.3036	1	225420			55435	2669	31835	31836	67742	67742					0.05569389914421663
VTVEEAAGGE	10	Unmodified	_VTVEEAAGGE_					0	0	0		nc|ENSG00000078018|P11137-2|MAP2;nc|ENSG00000078018|P11137-4|MAP2	nc|ENSG00000078018|P11137-2|MAP2	nc|ENSG00000078018|P11137-2|MAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2275390625	2	481.227279	960.440005	-0.071001	-3.4167E-05	0.070931	3.4134E-05	-7.0021E-05	-3.3696E-08	481.2274258127918	46.317	0.75679	46.317	46.003	46.76	0					68	27	5	0	0	0	0.34795	1	10469	10469		13.042	0	1	1876400			55436	12591	31836	31837	67743	67743					-0.04179709823995381
VTVEVVGKGK	10	Unmodified	_VTVEVVGKGK_					0	0	0		ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1;ENST00000527416.2_1_14:95555309-95557645:-|nuORF	ENSG00000100697|ENST00000343455|DICER1;ENST00000527416.2_1_14:95555309-95557645:-|nuORF	ENSG00000100697|ENST00000343455|DICER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.2898254394531	2	508.310949	1014.60735	0.080422	4.088E-05	-0.51618	-0.00026238	-0.43575	-0.0002215	508.31081107453394	22.251	0.31045	22.202	22.064	22.375	-0.049377					16	10	2	0	0	0	0.31538	1	3097	3097		12.873	1.3779	1	40999			55437	1623;11571	31837	31838	67744	67744					0.1006260251143658
VTVFILLGLS	10	Unmodified	_VTVFILLGLS_					0	0	0		ENSG00000198678|ENST00000328207|OR5BS1P	ENSG00000198678|ENST00000328207|OR5BS1P	ENSG00000198678|ENST00000328207|OR5BS1P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8136596679688	2	531.333893	1060.65323	0.63964	0.00033986	-0.5144	-0.00027332	0.12523	6.6542E-05	531.333574613568	65.848	0.51962	65.937	65.677	66.197	0.088875					26	18	2	0	0	0	0.31143	1	16509	16509		12.241	0	1	191070			55438	8101	31838	31839	67745	67745					0.12533247693681915
VTVFILLGLS	10	Unmodified	_VTVFILLGLS_					0	0	0		ENSG00000198678|ENST00000328207|OR5BS1P	ENSG00000198678|ENST00000328207|OR5BS1P	ENSG00000198678|ENST00000328207|OR5BS1P	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	531.333893	1060.65323	0.59747	0.00031746	-0.63423	-0.00033699	-0.036758	-1.9531E-05	531.3335815770087	65.989	0.55729	65.975	65.61	66.167	-0.013596	0.018952	-9.663E-05	NaN	12.241	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120260			55439	8101	31838	31839							0.12533247693681915
VTVGVDGTLYK	11	Unmodified	_VTVGVDGTLYK_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79827372-79827747:-|nuORF	nc|ENSG00000156515|P19367-4|HK1;ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.3193359375	2	576.318971	1150.62339	0.33064	0.00019056	0.28404	0.0001637	0.61468	0.00035425	576.3190355014228	45.15	1.0049	45.15	44.855	45.86	0					93	36	5	0	0	0	1.0567E-12	1	10037	10037		165.58	116.03	1	3902800			55440	5241;5405	31839	31840	67746	67746					0.05410263957674033
VTVGVDGTLYK	11	Unmodified	_VTVGVDGTLYK_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79827372-79827747:-|nuORF	nc|ENSG00000156515|P19367-4|HK1;ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3193359375	2	576.318971	1150.62339	0.43371	0.00024996	-0.094599	-5.4519E-05	0.33911	0.00019544	576.318857969374	44.97	0.83673	45.038	44.791	45.628	0.068573					77	29	5	0	0	0	3.2218E-10	1	9986	9986		161.44	105.94	1	4090600			55441	5241;5405	31839	31840	67747	67747					0.05410263957674033
VTVGVDGTLYK	11	Unmodified	_VTVGVDGTLYK_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENSG00000159399|ENST00000290573|HK2;ENST00000447818.2_1_X:79827372-79827747:-|nuORF	nc|ENSG00000156515|P19367-4|HK1;ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3191528320312	2	576.318971	1150.62339	0.39291	0.00022644	0.050286	2.8981E-05	0.4432	0.00025542	576.3189345488207	44.997	0.95683	45.072	44.78	45.737	0.075047					86	35	5	0	0	0	5.2003E-06	1	9979	9979		142.92	97.179	1	4086000			55442	5241;5405	31839	31840	67748	67748					0.05410263957674033
VTVHQKNYGFL	11	Unmodified	_VTVHQKNYGFL_					0	0	0			REV__ENST00000296582.7_1_4:148550803-148552572:+|nuORF	REV__ENST00000296582.7_1_4:148550803-148552572:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	435.5793762207031	3	435.903183	1304.68772	-0.1187	-5.1741E-05	-0.16556	-7.2167E-05	-0.28426	-0.00012391	435.90317479897186	21.955	0.68914	21.955	21.731	22.42	0					53	24	3	0	0	0	0.33236	1	3095	3095		4.4062	1.9714	1	207950	+		55443	19799	31840	31841	67749	67749					0.04756463834451097
VTVHVPPTIA	10	Unmodified	_VTVHVPPTIA_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.2385864257812	2	517.305667	1032.59678	0.11072	5.7276E-05	-2.2979	-0.0011887	-2.1872	-0.0011315	517.3054269051204	23.142	1.0022	23.055	22.628	23.631	-0.087608					117	35	6	0	0	0	0.31629	1	3280	3280		10.074	0	1	282480			55444	4808	31841	31842	67750	67750					0.08178619856994374
VTVHVPPTIA	10	Unmodified	_VTVHVPPTIA_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	517.305667	1032.59678	0.21998	0.0001138	-2.5252	-0.0013063	-2.3052	-0.0011925	517.305308840345	23.138	0.8771	23.093	22.679	23.556	-0.044867	0.018932	-0.0002035	NaN	10.074	116	31	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358970			55445	4808	31841	31842							0.08178619856994374
VTVIAHEL	8	Unmodified	_VTVIAHEL_					0	0	0		ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.6239013671875	2	441.258185	880.501818	-0.21166	-9.3396E-05	-0.065822	-2.9045E-05	-0.27748	-0.00012244	441.258143250893	27.678	0.9388	27.656	27.291	28.23	-0.021412					47	32	2	0	0	0	0.34218	1	4673	4673		9.3474	0	1	192310			55446	6116	31842	31843	67751	67751					0.056786863857951175
VTVIAHEL	8	Unmodified	_VTVIAHEL_					0	0	0		ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	441.258185	880.501818	-0.12662	-5.5873E-05	-0.15148	-6.6843E-05	-0.2781	-0.00012272	441.25820792992084	27.7	0.73981	27.7	27.441	28.181	0	0.030196	-8.8616E-05	NaN	9.3474	48	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138780			55447	6116	31842	31843							0.056786863857951175
VTVIAHEL	8	Unmodified	_VTVIAHEL_					0	0	0		ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	441.258185	880.501818	-0.19295	-8.5139E-05	0.059689	2.6338E-05	-0.13326	-5.8801E-05	441.25820921865943	27.664	0.96156	27.653	27.407	28.368	-0.01156	-0.01696	9.7746E-05	NaN	9.3474	56	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209210			55448	6116	31842	31843							0.056786863857951175
VTVIQQAVP	9	Unmodified	_VTVIQQAVP_					0	0	0		ARID2|p.Q1044Pfs*6|1|0.19|ENSG00000189079|chr12:45851254-45851273|AGTCGAATGCAGGAGTTGGT/-|frameshift_variant;ARID2|p.G1274Efs*21|1|0.55|ENSG00000189079|chr12:45851943-45851943|G/-|frameshift_variant;ARID2|p.S1466Rfs*2|1|0.05|ENSG00000189079|chr12:45852521-45852521|T/-|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.Q1044Pfs*6|1|0.19|ENSG00000189079|chr12:45851254-45851273|AGTCGAATGCAGGAGTTGGT/-|frameshift_variant	ARID2|p.Q1044Pfs*6|1|0.19|ENSG00000189079|chr12:45851254-45851273|AGTCGAATGCAGGAGTTGGT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2637939453125	2	477.784567	953.554582	0.011897	5.6841E-06	-0.24904	-0.00011899	-0.23715	-0.0001133	477.7845403296477	31.401	0.63527	31.443	30.939	31.574	0.042366					30	22	2	0	0	0	0.24311	1	5792	5792		16.942	1.0951	1	165850			55449	55	31843	31844	67752	67752					0.07594644448602139
VTVKGPILK	9	Unmodified	_VTVKGPILK_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.8210754394531	2	477.820953	953.627353	0.28464	0.00013601	0.11571	5.5289E-05	0.40035	0.00019129	477.82093813518657	29.03	0.62177	29.03	28.791	29.413	0					51	22	3	0	0	0	0.05341	1	5135	5135		51.63	9.7902	1	409020			55450	3128	31844	31845	67753	67753					0.14868398242037983
VTVKGPILK	9	Unmodified	_VTVKGPILK_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.8211669921875	2	477.820953	953.627353	0.24271	0.00011597	0.18178	8.6856E-05	0.42448	0.00020283	477.82093909987174	28.962	0.59197	28.966	28.761	29.353	0.0040131					41	20	3	0	0	0	0.012386	2	5127	5127;5182		75.761	31.903	1	470670			55451	3128	31844	31845	67754;67755	67754					0.14868398242037983
VTVKGPILK	9	Unmodified	_VTVKGPILK_					0	0	0		nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1;ENST00000465149.1_1_2:220420747-220435459:-|nuORF;nc|ENSG00000124006|O75147-1|OBSL1;nc|ENSG00000124006|O75147-2|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.8211669921875	2	477.820953	953.627353	0.11407	5.4503E-05	0.34241	0.00016361	0.45648	0.00021811	477.8210145234114	29.012	0.60125	29.025	28.789	29.39	0.013474					49	21	3	0	0	0	0.012386	1	5120	5120		75.761	31.903	1	426720			55452	3128	31844	31845	67756	67756					0.14868398242037983
VTVLLAVAPGS	11	Unmodified	_VTVLLAVAPGS_					0	0	0			REV__nc|ENSG00000185176|A6NM10|AQP12B	REV__nc|ENSG00000185176|A6NM10|AQP12B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8020629882812	2	513.813325	1025.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.58	1	66.567	66.067	67.067	-0.013588								0	0	0	0.34766	1	16662	16662		8.7454	0.83525	1		+		55453	18342	31845	31846	67757	67757					0.10031486654179389
VTVLLHHR	8	Unmodified	_VTVLLHHR_					0	0	0		ENST00000471102.1_1_10:46281927-46282167:+|nuORF	ENST00000471102.1_1_10:46281927-46282167:+|nuORF	ENST00000471102.1_1_10:46281927-46282167:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.254150390625	2	487.798343	973.582134	0.27071	0.00013205	-1.5625	-0.00076217	-1.2918	-0.00063012	487.7977938318138	21.725	0.58882	21.725	21.487	22.076	0					28	21	2	0	0	0	0.34247	1	2926	2926		8.5933	8.5933	1	56280			55454	10872	31846	31847	67758	67758					0.0942859249950061
VTVLPHLPSP	10	Unmodified	_VTVLPHLPSP_					0	0	0		ENST00000526661.5_1_11:836524-836704:+|nuORF	ENST00000526661.5_1_11:836524-836704:+|nuORF	ENST00000526661.5_1_11:836524-836704:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3318481445312	2	530.313492	1058.61243	0.25779	0.00013671	-0.062471	-3.3129E-05	0.19532	0.00010358	530.3137617917846	65.214	1.2423	65.214	64.91	66.152	0					125	44	5	0	0	0	0.2811	1	16184	16184		22.736	6.8891	1	4005800			55455	11559	31847	31848	67759	67759					0.08546906374044738
VTVNFAYLLDF	11	Unmodified	_VTVNFAYLLDF_					0	0	0			REV__ENSG00000183960|ENST00000328405|KCNH8	REV__ENSG00000183960|ENST00000328405|KCNH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.2865905761719	3	434.564056	1300.67034	0.0033417	1.4522E-06	-0.6786	-0.00029489	-0.67525	-0.00029344	434.56370384840886	44.444	0.78051	44.444	43.959	44.739	0					40	28	2	0	0	0	0.33122	1	9855	9855		7.0371	0.0029731	1	521150	+		55456	18295	31848	31849	67760	67760					0.03203123508774297
VTVPINGTHEF	11	Unmodified	_VTVPINGTHEF_					0	0	0			REV__nc|ENSG00000187741|O15360-3|FANCA	REV__nc|ENSG00000187741|O15360-3|FANCA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2193908691406	3	405.211906	1212.61389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.087	1	28.083	27.583	28.583	-0.0042572								0	0	0	0.32811	1	4856	4856		7.0371	0	1		+		55457	18517	31849	31850	67761	67761					0.01608495672121535
VTVPRLQEL	9	Unmodified	_VTVPRLQEL_					0	0	0			REV__nc|ENSG00000169891|Q8NFH8-4|REPS2	REV__nc|ENSG00000169891|Q8NFH8-4|REPS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2803955078125	2	527.816399	1053.61824	0.40943	0.00021611	-0.77632	-0.00040975	-0.36689	-0.00019365	527.8161266077917	47.24	0.56159	47.293	47.038	47.599	0.052574					48	20	3	0	0	0	0.2451	1	10671	10671		6.7232	0	1	548830	+		55458	17548	31850	31851	67762	67762					0.09358004885712035
VTVPRLQEL	9	Unmodified	_VTVPRLQEL_					0	0	0			REV__nc|ENSG00000169891|Q8NFH8-4|REPS2	REV__nc|ENSG00000169891|Q8NFH8-4|REPS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.280029296875	2	527.816399	1053.61824	1.1154	0.00058871	-1.2934	-0.00068268	-0.17803	-9.3965E-05	527.8158015340575	47.248	0.55522	47.302	47.093	47.648	0.054371					34	20	2	0	0	0	0.2451	1	10678	10678		10.824	0	1	416170	+		55459	17548	31850	31851	67763	67763					0.09358004885712035
VTVPSVQTFLI	11	Unmodified	_VTVPSVQTFLI_					0	0	0		nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.3515625	2	602.352814	1202.69108	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.455	1	93.455	92.955	93.955	0								0	0	0	0.37501	1	24892	24892		2.7352	0.67545	1				55460	2218	31851	31852	67764	67764					0.09783713888464263
VTVQEMVTK	9	Oxidation (M)	_VTVQEM(Oxidation (M))VTK_		VTVQEM(1)VTK		VTVQEM(50)VTK	0	0	1		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7786865234375	2	525.778625	1049.5427	0.45502	0.00023924	-0.52408	-0.00027555	-0.069058	-3.6309E-05	525.7782403710189	24.499	0.98287	24.427	24.024	25.007	-0.072559					75	33	3	0	0	0	0.059067	1	3808	3808		49.527	7.5717	1	393160			55461	4024	31852	31853	67765	67765		508			0.019906596430928403
VTVQEMVTK	9	Oxidation (M)	_VTVQEM(Oxidation (M))VTK_		VTVQEM(1)VTK		VTVQEM(65)VTK	0	0	1		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.77880859375	2	525.778625	1049.5427	0.33782	0.00017762	-0.50787	-0.00026703	-0.17005	-8.9407E-05	525.7783082119321	24.496	1.1518	24.457	24.049	25.201	-0.038927					94	39	4	0	0	0	0.019446	1	3798	3798		64.927	22.971	1	368900			55462	4024	31852	31853	67766	67766		508			0.019906596430928403
VTVQKGPL	8	Unmodified	_VTVQKGPL_					0	0	0		ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.5149230957031	2	421.260728	840.506903	-0.17839	-7.5149E-05	0.93032	0.00039191	0.75193	0.00031676	421.260511663116	26.304	0.48643	26.304	26.042	26.528	0					30	16	3	0	0	0	0.34092	1	4319	4319		13.508	0	1	74745			55463	3768	31853	31854	67767	67767					0.08026990248424681
VTVRPRKVP	9	Unmodified	_VTVRPRKVP_					0	0	0			REV__ENST00000488227.1_1_20:32663701-32663851:+|nuORF	REV__ENST00000488227.1_1_20:32663701-32663851:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8253784179688	2	526.340375	1050.6662	0.86253	0.00045398	-0.12075	-6.3558E-05	0.74177	0.00039042	526.3401687472639	37.184	0.29959	37.184	36.959	37.259	0					17	10	3	0	0	0	0.25526	1	7637	7637		4.3292	0	1	130110	+		55464	15295	31854	31855	67768	67768					0.14289123596404352
VTVRSKER	8	Unmodified	_VTVRSKER_					0	0	0		ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	ENSG00000158623|ENST00000425248|COPG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7909240722656	2	487.790715	973.566878	0.41302	0.00020147	0.40261	0.00019639	0.81562	0.00039785	487.7906948525249	72.031	1.8157	72.004	71.368	73.183	-0.027275					152	64	3	0	0	0	0.45431	1	18562	18562		4.3292	4.3292	1	1149600			55465	5365	31855	31856	67769	67769					0.07903680911658739
VTVSIVSLH	9	Unmodified	_VTVSIVSLH_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-3|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-3|FAM135B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.26422119140625	2	477.784567	953.554582	-0.0037029	-1.7692E-06	0.15202	7.2635E-05	0.14832	7.0866E-05	477.78469046458923	31.473	1.1368	31.473	30.499	31.636	0					49	40	2	0	0	0	0.20651	1	5894	5894		20.454	4.6064	1	173550	+		55466	16404	31856	31857	67770	67770					0.07594644448602139
VTVSNLVSI	9	Unmodified	_VTVSNLVSI_					0	0	0			REV__nc|ENSG00000071082|P62899-2|RPL31	REV__nc|ENSG00000071082|P62899-2|RPL31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2768249511719	2	466.276575	930.538597	0.076761	3.5792E-05	0.66503	0.00031009	0.74179	0.00034588	466.2767954044025	29.742	0.70056	29.754	29.331	30.032	0.012266					40	23	2	0	0	0	0.25989	1	5340	5340		14.838	0	1	208300	+		55467	22896	31857	31858	67771	67771					0.07054938211717854
VTVSNLVSI	9	Unmodified	_VTVSNLVSI_					0	0	0			REV__nc|ENSG00000071082|P62899-2|RPL31	REV__nc|ENSG00000071082|P62899-2|RPL31	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	466.276575	930.538597	0.076761	3.5792E-05	0.66503	0.00031009	0.74179	0.00034588	466.2767954044025	29.742	0.70056	29.754	29.331	30.032	0.012266	-0.016309	-0.00011492	NaN	14.838	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208300	+		55468	22896	31857	31858							0.07054938211717854
VTVTIIQSV	9	Unmodified	_VTVTIIQSV_					0	0	0			REV__ENST00000483567.1_1_7:123143235-123152394:-|nuORF	REV__ENST00000483567.1_1_7:123143235-123152394:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2772521972656	2	480.292225	958.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.558	1	47.558	47.058	48.058	0								0	0	0	0.21353	1	10809	10809		18.146	0	1		+		55469	17173	31858	31859	67772	67772					0.0889551124580521
VTVTRKRR	8	Unmodified	_VTVTRKRR_					0	0	0		ENST00000406775.6_2_7:69364353-70163597:+|nuORF	ENST00000406775.6_2_7:69364353-70163597:+|nuORF	ENST00000406775.6_2_7:69364353-70163597:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.32659912109375	2	508.327799	1014.64105	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.5	1	104.5	104	105	0								0	0	0	0.37724	1	27740	27740		2.3027	0	1				55470	10225	31859	31860	67773	67773					0.1343106879384095
VTVVTEPP	8	Unmodified	_VTVVTEPP_					0	0	0		COL22A1|p.K1223Rfs*86|1|0.3|ENSG00000169436|chr8:138626235-138626239|TTCTT/-|frameshift_variant;nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1	COL22A1|p.K1223Rfs*86|1|0.3|ENSG00000169436|chr8:138626235-138626239|TTCTT/-|frameshift_variant	COL22A1|p.K1223Rfs*86|1|0.3|ENSG00000169436|chr8:138626235-138626239|TTCTT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.92724609375	2	421.236919	840.459284	0.51364	0.00021636	0.81738	0.00034431	1.331	0.00056067	421.2371804936042	36.507	0.52232	36.593	36.451	36.973	0.086246					23	18	2	0	0	0	0.34247	1	7418	7418		8.5933	0	1	81268			55471	196	31860	31861	67774	67774					0.03267291257566285
VTWEQVLT	8	Unmodified	_VTWEQVLT_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2497863769531	2	488.260925	974.507297	0.44558	0.00021756	-1.9647	-0.0009593	-1.5191	-0.00074174	488.2596575730108	87.72	1.0091	87.72	87.194	88.204	0					62	47	2	0	0	0	0.4419	1	23045	23045		8.5933	2.8329	1	95766	+		55472	14684	31861	31862	67775	67775					0.01902365177613774
VTWEQVLT	8	Unmodified	_VTWEQVLT_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7998046875	2	488.260925	974.507297	0.41565	0.00020295	-1.5885	-0.00077559	-1.1728	-0.00057264	488.25976414567435	87.605	0.55824	87.599	87.262	87.82	-0.0056229					37	29	2	0	0	0	0.34092	1	23096	23096		13.508	0	1	125460	+		55473	14684	31861	31862	67776	67776					0.01902365177613774
VTWEQVLT	8	Unmodified	_VTWEQVLT_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	488.260925	974.507297	0.35619	0.00017391	-1.5062	-0.00073543	-1.15	-0.00056152	488.2597357907863	87.581	0.50952	87.668	87.305	87.814	0.08709	0.0051338	0.00018047	NaN	13.508	35	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73074	+		55474	14684	31861	31862							0.01902365177613774
VTWIALMVF	9	Unmodified	_VTWIALMVF_					0	0	0		ENSG00000126895|ENST00000646375|AVPR2;nc|ENSG00000126895|P30518-2|AVPR2;ENST00000434679.5_1_X:153170523-153172179:+|nuORF	ENSG00000126895|ENST00000646375|AVPR2	ENSG00000126895|ENST00000646375|AVPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.30126953125	2	540.301539	1078.58852	0.41509	0.00022427	-0.87885	-0.00047484	-0.46376	-0.00025057	540.3008814529572	24.429	0.84366	24.429	23.973	24.817	0					33	16	3	0	0	0	0.32733	1	3743	3743		4.756	1.1595	1	120170			55475	3300	31862	31863	67777	67777					0.05237349616004394
VTWIALMVF	9	Unmodified	_VTWIALMVF_					0	0	0		ENSG00000126895|ENST00000646375|AVPR2;nc|ENSG00000126895|P30518-2|AVPR2;ENST00000434679.5_1_X:153170523-153172179:+|nuORF	ENSG00000126895|ENST00000646375|AVPR2	ENSG00000126895|ENST00000646375|AVPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.3015747070312	2	540.301539	1078.58852	0.45892	0.00024795	-1.0286	-0.00055573	-0.56964	-0.00030778	540.3007999971437	24.592	1.1196	24.521	24	25.119	-0.070274					43	33	3	0	0	0	0.30166	1	3796	3796		8.5933	0.98433	1	123730			55476	3300	31862	31863	67778	67778					0.05237349616004394
VTWKGAAK	8	Unmodified	_VTWKGAAK_					0	0	0			REV__ENST00000508755.1_1_3:134201706-134201784:-|nuORF	REV__ENST00000508755.1_1_3:134201706-134201784:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.5712585449219	2	430.75307	859.491587	-0.10376	-4.4696E-05	0.074773	3.2209E-05	-0.028989	-1.2487E-05	430.7529825159729	43.385	1.2472	43.385	42.842	44.09	0					108	45	4	0	0	0	0.34272	1	9379	9379		1.8442	1.2427	1	3538800	+		55477	20180	31863	31864	67779	67779					0.05622123451223615
VTWMQPLKEML	11	Unmodified	_VTWMQPLKEML_					0	0	0		ENST00000568633.1_1_16:88741538-88741892:+|nuORF	ENST00000568633.1_1_16:88741538-88741892:+|nuORF	ENST00000568633.1_1_16:88741538-88741892:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.2507019042969	3	459.241931	1374.70396	-0.15999	-7.3475E-05	3.5142	0.0016139	3.3543	0.0015404	459.57751603153457	23.121	0.66751	23.121	22.875	23.542	0					53	22	4	0	0	0	0.45629	1	3374	3374		3.8459	1.0026	1	99339			55478	12004	31864	31865	67780	67780					0.0316008568468078
VTWYKNGQ	8	Unmodified	_VTWYKNGQ_					0	0	0		ENSG00000198796|ENST00000361673|ALPK2;ALPK2|p.V710Rfs*14|1|0.11|ENSG00000198796|chr18:58538059-58538060|-/CATAGATTCT|frameshift_variant;ALPK2|p.K711Sfs*28|1|0.11|ENSG00000198796|chr18:58538057-58538058|-/AT|frameshift_variant	ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.334716796875	2	498.250892	994.48723	0.27047	0.00013476	0.99073	0.00049363	1.2612	0.00062839	498.2511323962491	73.814	0.62383	73.783	73.344	73.967	-0.030655					38	22	2	0	0	0	0.33993	1	18880	18880		11.64	1.5664	1	174460			55479	8128	31865	31866	67781	67781					-0.01023385762334783
VTYFFHQIPA	10	Unmodified	_VTYFFHQIPA_					0	0	0		ENST00000482791.1_1_1:151638429-151641724:+|nuORF	ENST00000482791.1_1_1:151638429-151641724:+|nuORF	ENST00000482791.1_1_1:151638429-151641724:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.73236083984375	3	408.213358	1221.61824	-0.3084	-0.00012589	2.9513	0.0012048	2.6429	0.0010789	408.2143712436122	22.958	0.52387	22.958	22.649	23.173	0					29	17	2	0	0	0	0.31942	1	3292	3292		6.1918	0	1	65905			55480	11051	31866	31867	67782	67782					0.01630004885737435
VTYFIYFYEWP	11	Unmodified	_VTYFIYFYEWP_					0	0	0			REV__ENST00000454158.6_1_4:37614769-37614952:-|nuORF	REV__ENST00000454158.6_1_4:37614769-37614952:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.28106689453125	3	509.911345	1526.7122	0.3229	0.00016465	-1.6736	-0.0008534	-1.3507	-0.00068876	509.91070854989465	29.874	0.47046	29.886	29.589	30.06	0.012266					38	15	4	0	0	0	0.33122	1	5444	5444		2.4348	0	1	111400	+		55481	21145	31867	31868	67783	67783					-0.030083208026780994
VTYFIYFYEWP	11	Unmodified	_VTYFIYFYEWP_					0	0	0			REV__ENST00000454158.6_1_4:37614769-37614952:-|nuORF	REV__ENST00000454158.6_1_4:37614769-37614952:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2811584472656	3	509.911345	1526.7122	0.007442	3.7948E-06	-1.1376	-0.00058009	-1.1302	-0.00057629	509.9107903272542	29.841	0.44574	29.855	29.623	30.069	0.013474					23	14	2	0	0	0	0.33334	1	5440	5440		1.2148	0.70888	1	127610	+		55482	21145	31867	31868	67784	67784					-0.030083208026780994
VTYFWRFKL	9	Unmodified	_VTYFWRFKL_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.2432861328125	3	420.569365	1258.68626	-0.34014	-0.00014305	2.0764	0.00087328	1.7363	0.00073023	420.5700730266003	14.821	0.34383	14.821	14.701	15.044	0					18	11	2	0	0	0	0.25756	1	844	844		7.1017	0	1	58355			55483	3210	31868	31869	67785	67785					0.06726874536389005
VTYKALYGF	9	Unmodified	_VTYKALYGF_					0	0	0			REV__nc|ENSG00000184634|Q93074-3|MED12	REV__nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7601928710938	2	531.286943	1060.55933	0.43452	0.00023085	-0.40052	-0.00021279	0.033995	1.8061E-05	531.2864786749988	38.437	0.43618	38.528	38.294	38.73	0.090881					24	15	2	0	0	0	0.25811	1	7950	7950		5.2307	0	1	129470	+		55484	18327	31869	31870	67786	67786					0.031475285913757034
VTYNGVDNNK	10	Unmodified	_VTYNGVDNNK_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000469999.1_1_7:152065296-152065533:+|nuORF;ENST00000492940.1_1_7:35930257-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.27197265625	2	562.272552	1122.53055	0.22797	0.00012818	-0.16364	-9.2008E-05	0.064332	3.6172E-05	562.2724095302867	19.987	0.41201	19.987	19.768	20.18	0					28	15	3	0	0	0	0.16374	1	2392	2392		37.075	22.236	1	150530			55485	3049	31870	31871	67787	67787					-0.025812407757030087
VTYNGVDNNK	10	Unmodified	_VTYNGVDNNK_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000469999.1_1_7:152065296-152065533:+|nuORF;ENST00000492940.1_1_7:35930257-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.272216796875	2	562.272552	1122.53055	0.47732	0.00026839	-0.4264	-0.00023975	0.050928	2.8636E-05	562.2722184756858	20.174	0.63766	20.058	19.544	20.182	-0.11592					33	21	3	0	0	0	0.24548	1	2436	2436		27.088	16.938	1	103980			55486	3049	31870	31871	67788	67788					-0.025812407757030087
VTYNGVDNNK	10	Unmodified	_VTYNGVDNNK_					0	0	0		ENST00000425198.1_1_7:35872473-35938044:+|nuORF;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000469999.1_1_7:152065296-152065533:+|nuORF;ENST00000492940.1_1_7:35930257-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	ENST00000425198.1_1_7:35872473-35938044:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.2728881835938	2	562.272552	1122.53055	0.4925	0.00027692	-0.27326	-0.00015365	0.21924	0.00012327	562.2723134604769	20.072	0.41053	20.016	19.816	20.227	-0.055693					27	14	3	0	0	0	0.13068	2	2414	2414;2449		41.347	26.099	1	137370			55487	3049	31870	31871	67789;67790	67789					-0.025812407757030087
VTYNYPVHY	9	Unmodified	_VTYNYPVHY_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.2775268554688	2	578.277106	1154.53966	0.49671	0.00028724	1.0048	0.00058105	1.5015	0.00086828	578.2775765553503	45.983	0.41807	45.983	45.72	46.138	0					30	14	3	0	0	0	0.014888	2	10305	10305;10344		71.922	55.773	1	785030			55488	2454	31871	31872	67791;67792	67791					-0.03142847419394457
VTYNYPVHY	9	Unmodified	_VTYNYPVHY_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2780151367188	2	578.277106	1154.53966	0.34488	0.00019944	1.0007	0.00057866	1.3455	0.0007781	578.2774402168394	45.679	0.56768	45.739	45.448	46.015	0.059834					42	19	3	0	0	0	0.014888	2	10223	10223;10265		71.922	54.809	1	754490			55489	2454	31871	31872	67793;67794	67793					-0.03142847419394457
VTYNYPVHY	9	Unmodified	_VTYNYPVHY_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.7949829101562	2	578.277106	1154.53966	0.45806	0.00026489	0.75746	0.00043802	1.2155	0.00070291	578.2775852562141	45.634	0.60933	45.699	45.487	46.096	0.065048					40	21	3	0	0	0	0.0085732	4	10188	10188;10216;10251;10262		81.613	55.345	1	709600			55490	2454	31871	31872	67795;67796;67797;67798	67795					-0.03142847419394457
VTYPKCLPQ	9	Unmodified	_VTYPKCLPQ_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1	REV__ENSG00000173517|ENST00000682557|PEAK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7890014648438	2	524.778428	1047.5423	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.25	1	40.35	39.85	40.85	0.099407								0	0	0	0.22065	1	8560	8560		15.847	0	1		+		55491	17784	31872	31873	67799	67799					0.020432847139318255
VTYQGHTFE	9	Unmodified	_VTYQGHTFE_					0	0	0		nc|ENSG00000211891|P01854-1|IGHE;nc|ENSG00000211891|P01854-3|IGHE;nc|ENSG00000211891|P01854|IGHE	nc|ENSG00000211891|P01854-1|IGHE	nc|ENSG00000211891|P01854-1|IGHE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.300537109375	2	541.251089	1080.48762	0.64849	0.000351	-1.1591	-0.00062738	-0.51064	-0.00027638	541.2505999669431	87.71	0.36764	87.705	87.582	87.949	-0.0049515					30	20	2	0	0	0	0.25066	1	23108	23108		11.64	0	1	96783			55492	12933	31873	31874	67800	67800					-0.049400108331155934
VTYQGHTFE	9	Unmodified	_VTYQGHTFE_					0	0	0		nc|ENSG00000211891|P01854-1|IGHE;nc|ENSG00000211891|P01854-3|IGHE;nc|ENSG00000211891|P01854|IGHE	nc|ENSG00000211891|P01854-1|IGHE	nc|ENSG00000211891|P01854-1|IGHE	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.251089	1080.48762	0.63355	0.00034291	-1.2896	-0.00069798	-0.65603	-0.00035508	541.2502132604587	87.824	0.28242	87.824	87.643	87.925	0	0.059367	-9.0862E-05	NaN	11.64	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73240			55493	12933	31873	31874							-0.049400108331155934
VTYTSQTVKRL	11	Unmodified	_VTYTSQTVKRL_					0	0	0		ENST00000519354.1_1_17:15341092-15355857:-|nuORF;ENSG00000239704|ENST00000619038|CDRT4	ENST00000519354.1_1_17:15341092-15355857:-|nuORF	ENST00000519354.1_1_17:15341092-15355857:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5945739746094	3	432.58211	1294.7245	-0.49884	-0.00021579	0.53874	0.00023305	0.039905	1.7262E-05	432.58219405867095	25.25	0.42544	25.218	24.953	25.378	-0.031408					24	14	2	0	0	0	0.43513	1	3941	3941		6.6235	0	1	108700			55494	8515	31874	31875	67801	67801					0.08892715660363137
VTYVNPPSF	9	Unmodified	_VTYVNPPSF_					0	0	0			REV__ENST00000263377.6_1_19:15348671-15349019:-|nuORF	REV__ENST00000263377.6_1_19:15348671-15349019:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2791748046875	2	512.260925	1022.5073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.475	1	74.444	73.944	74.944	-0.030655								0	0	0	0.20639	1	19072	19072		20.454	0	1		+		55495	19620	31875	31876	67802	67802					-0.0030563482237084827
VTYVPVTTFK	10	Unmodified	_VTYVPVTTFK_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000431088.1_1_2:223591487-223591550:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.8265380859375	2	577.826432	1153.63831	0.69238	0.00040007	-0.4715	-0.00027244	0.22088	0.00012763	577.8260659865168	50.739	0.62107	50.739	50.518	51.139	0					57	22	4	0	0	0	0.16374	1	11814	11814		37.075	2.6729	1	911350			55496	951	31876	31877	67803	67803					0.06763755825636508
VTYVPVTTFK	10	Unmodified	_VTYVPVTTFK_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000431088.1_1_2:223591487-223591550:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.8267211914062	2	577.826432	1153.63831	0.72325	0.00041791	-0.47765	-0.000276	0.2456	0.00014192	577.8260506180148	50.722	0.54097	50.768	50.55	51.091	0.045753					46	19	3	0	0	0	0.17571	1	11815	11815		35.612	2.8266	1	826010			55497	951	31876	31877	67804	67804					0.06763755825636508
VTYVPVTTFK	10	Unmodified	_VTYVPVTTFK_					0	0	0		nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31;ENST00000431088.1_1_2:223591487-223591550:+|nuORF	nc|ENSG00000071082|P62899-3|RPL31	nc|ENSG00000071082|P62899-3|RPL31	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	577.826432	1153.63831	0.73591	0.00042523	-0.64124	-0.00037053	0.094672	5.4704E-05	577.8259631909887	50.738	0.58305	50.748	50.511	51.094	0.0095634	-0.0035874	-0.0001113	NaN	37.075	53	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	896590			55498	951	31876	31877							0.06763755825636508
VTYYIFFYL	9	Unmodified	_VTYYIFFYL_					0	0	0			REV__ENST00000488625.6_1_10:31817466-31817604:+|nuORF	REV__ENST00000488625.6_1_10:31817466-31817604:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5785217285156	3	410.214476	1227.6216	-0.19899	-8.1631E-05	-1.6884	-0.00069262	-1.8874	-0.00077425	410.21384575449713	27.708	0.22641	27.686	27.493	27.72	-0.021412					9	7	2	0	0	0	0.26127	1	4712	4712		2.7352	0	1	46622	+		55499	21577	31877	31878	67805	67805					0.01689254939719831
VVAANDLK	8	Unmodified	_VVAANDLK_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B;ENSG00000130477|ENST00000519716|UNC13A	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.2424011230469	2	415.242535	828.470518	0.072666	3.0174E-05	-0.80646	-0.00033488	-0.73379	-0.0003047	415.24204887679116	17.074	0.94268	16.957	16.72	17.663	-0.11739					79	33	3	0	0	0	0.31518	1	1508	1508		29.082	4.0906	1	477180			55500	8109	31878	31879	67806	67806					0.04942113351705757
VVAANDLK	8	Unmodified	_VVAANDLK_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B;ENSG00000130477|ENST00000519716|UNC13A	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	415.242535	828.470518	-0.068452	-2.8424E-05	-0.89408	-0.00037126	-0.96253	-0.00039968	415.24197519110703	16.961	1.1493	16.961	16.749	17.898	0	-0.0017684	7.8716E-05	NaN	29.082	74	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	448970			55501	8109	31878	31879							0.04942113351705757
VVAANDLK	8	Unmodified	_VVAANDLK_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B;ENSG00000130477|ENST00000519716|UNC13A	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	415.242535	828.470518	0.29026	0.00012053	-1.4227	-0.00059075	-1.1324	-0.00047022	415.2417642831626	17.031	0.83216	16.971	16.756	17.588	-0.060429	0.0079435	-0.00036026	NaN	29.082	69	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	512490			55502	8109	31878	31879							0.04942113351705757
VVAAVIWRK	9	Unmodified	_VVAAVIWRK_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2685546875	2	521.332019	1040.64948	0.78729	0.00041044	0.06312	3.2907E-05	0.85041	0.00044334	521.3318231946613	37.565	0.343	37.565	37.424	37.767	0					20	11	2	0	0	0	0.17611	1	7729	7729		34.102	21.571	1	141740			55503	8242	31879	31880	67807	67807					0.13078622710463605
VVAAVIWRK	9	Unmodified	_VVAAVIWRK_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.268310546875	2	521.332019	1040.64948	0.44717	0.00023313	0.73118	0.00038119	1.1784	0.00061431	521.3321688905305	37.544	0.32675	37.631	37.442	37.768	0.087406					18	11	2	0	0	0	0.1524	1	7707	7707		39.957	23.015	1	111060			55504	8242	31879	31880	67808	67808					0.13078622710463605
VVAAVIWRK	9	Unmodified	_VVAAVIWRK_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.268310546875	2	521.332019	1040.64948	0.43072	0.00022455	0.6838	0.00035649	1.1145	0.00058103	521.3321216253314	37.399	0.37627	37.492	37.302	37.678	0.093018					20	13	2	0	0	0	0.19839	1	7683	7683		28.487	15.955	1	120670			55505	8242	31879	31880	67809	67809					0.13078622710463605
VVADRRRVRV	10	Unmodified	_VVADRRRVRV_					0	0	0		ENST00000484881.5_1_2:74756974-74758788:+|nuORF;ENST00000484352.5_1_2:74757313-74758690:+|nuORF;nc|ENSG00000115317|O43464-4|HTRA2;ENST00000465521.1_1_2:74757592-74758334:+|nuORF;nc|ENSG00000115317|O43464-2|HTRA2;nc|ENSG00000115317|O43464-3|HTRA2;ENSG00000115317|ENST00000258080|HTRA2	ENST00000484881.5_1_2:74756974-74758788:+|nuORF	ENST00000484881.5_1_2:74756974-74758788:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.27960205078125	3	409.258184	1224.75272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.274	1	14.208	13.708	14.708	-0.066068								0	0	0	0.38196	1	675	675		0.77653	0	1				55506	11074	31880	31881	67810	67810					0.14933503150973593
VVAFPAPWAG	10	Unmodified	_VVAFPAPWAG_					0	0	0		ENST00000368347.8_1_1:155293744-155293912:+|nuORF	ENST00000368347.8_1_1:155293744-155293912:+|nuORF	ENST00000368347.8_1_1:155293744-155293912:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7734680175781	2	507.774003	1013.53345	0.26885	0.00013651	-1.112	-0.00056464	-0.84314	-0.00042812	507.77325311060815	24.172	1.0018	24.099	23.791	24.793	-0.072559					70	33	3	0	0	0	0.35073	1	3697	3697		12.532	0.89125	1	239590			55507	9758	31881	31882	67811	67811					0.027226791397538364
VVAGRRKS	8	Unmodified	_VVAGRRKS_					0	0	0		ENSG00000151952|ENST00000422113|TMEM132D	ENSG00000151952|ENST00000422113|TMEM132D	ENSG00000151952|ENST00000422113|TMEM132D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.7747802734375	2	436.774868	871.535184	-0.1139	-4.9749E-05	-0.094887	-4.1444E-05	-0.20879	-9.1193E-05	436.77482844237693	80.491	1.9339	80.556	80.131	82.065	0.065094					212	85	3	0	0	0	0.45169	1	21017	21017		5.2307	0	1	18138000			55508	4994	31882	31883	67812	67812					0.09427732948370249
VVAGTLTF	8	Unmodified	_VVAGTLTF_					0	0	0			REV__ENSG00000070019|ENST00000261170|GUCY2C	REV__ENSG00000070019|ENST00000261170|GUCY2C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2268981933594	2	404.234179	806.453805	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.441	1	77.41	76.91	77.91	-0.031334								0	0	0	0.36961	1	19974	19974		5.7604	0	1		+		55509	13718	31883	31884	67813	67813					0.042836124657469554
VVAHIPEVR	9	Unmodified	_VVAHIPEVR_					0	0	0			REV__nc|ENSG00000197114|Q8N5A5-4|ZGPAT	REV__nc|ENSG00000197114|Q8N5A5-4|ZGPAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.3042297363281	2	510.303458	1018.59236	0.29044	0.00014821	-0.59713	-0.00030472	-0.30669	-0.0001565	510.3034034363122	24.913	0.45272	24.913	24.639	25.091	0					37	15	3	0	0	0	0.30623	1	3884	3884		7.9102	0.3012	1	82946	+		55510	18710	31884	31885	67814	67814					0.08381155434096854
VVALLGLIKLL	11	Unmodified	_VVALLGLIKLL_					0	0	0			REV__ENSG00000094963|ENST00000209929|FMO2	REV__ENSG00000094963|ENST00000209929|FMO2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.3385620117188	2	576.409935	1150.80532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.09	1	111.11	110.61	111.61	0.01152								0	0	0	0.3823	1	28952	28952		0	0	1		+		55511	14093	31885	31886	67815	67815					0.23594648441235222
VVAMGDWHIA	10	Unmodified	_VVAMGDWHIA_					0	0	0			REV__ENSG00000215912|ENST00000401095|TTC34	REV__ENSG00000215912|ENST00000401095|TTC34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7738037109375	2	549.773677	1097.5328	0.21296	0.00011708	-0.95864	-0.00052703	-0.74568	-0.00040996	549.7731993523747	18.795	0.50108	18.795	18.451	18.952	0					43	17	3	0	0	0	0.24715	2	2019	2019;2069		26.884	5.7733	1	261770	+		55512	19083	31886	31887	67816;67817	67816					-0.012064835715818845
VVAMGDWHIA	10	Unmodified	_VVAMGDWHIA_					0	0	0			REV__ENSG00000215912|ENST00000401095|TTC34	REV__ENSG00000215912|ENST00000401095|TTC34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7730712890625	2	549.773677	1097.5328	0.18687	0.00010274	-1.3952	-0.00076707	-1.2084	-0.00066433	549.7730313264017	19.107	0.8723	19.107	18.895	19.768	0					63	30	3	0	0	0	0.33268	2	2121	2121;2173		15.847	5.0233	1	335320	+		55513	19083	31886	31887	67818;67819	67818					-0.012064835715818845
VVAMGDWHIA	10	Unmodified	_VVAMGDWHIA_					0	0	0			REV__ENSG00000215912|ENST00000401095|TTC34	REV__ENSG00000215912|ENST00000401095|TTC34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7987060546875	2	549.773677	1097.5328	0.32916	0.00018097	-1.793	-0.00098572	-1.4638	-0.00080475	549.7729813217264	19.914	0.39009	19.914	19.655	20.045	0					21	13	2	0	0	0	0.32009	1	2300	2300		3.9444	0	1	37087	+		55514	19083	31886	31887	67820	67820					-0.012064835715818845
VVAMGDWHIA	10	Unmodified	_VVAMGDWHIA_					0	0	0			REV__ENSG00000215912|ENST00000401095|TTC34	REV__ENSG00000215912|ENST00000401095|TTC34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3054809570312	2	549.773677	1097.5328	0.18687	0.00010274	-1.3952	-0.00076707	-1.2084	-0.00066433	549.7730313264017	19.107	0.8723	19.107	18.895	19.768	0					63	30	3	0	0	0	0.31847	1	2217	2217		6.7232	1.9672	1	335320	+		55515	19083	31886	31887	67821	67821					-0.012064835715818845
VVAMGDWHIA	10	Unmodified	_VVAMGDWHIA_					0	0	0			REV__ENSG00000215912|ENST00000401095|TTC34	REV__ENSG00000215912|ENST00000401095|TTC34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7731323242188	2	549.773677	1097.5328	0.31902	0.00017539	-1.0754	-0.00059124	-0.75641	-0.00041585	549.7729926620975	19.245	1.4333	19.189	18.573	20.006	-0.055693					85	50	2	0	0	0	0.29978	3	2152	2152;2200;2256		20.454	7.2539	1	395100	+		55516	19083	31886	31887	67822;67823;67824	67822					-0.012064835715818845
VVAMGDWHIA	10	Unmodified	_VVAMGDWHIA_					0	0	0			REV__ENSG00000215912|ENST00000401095|TTC34	REV__ENSG00000215912|ENST00000401095|TTC34	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7737426757812	2	549.773677	1097.5328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.823	1	18.765	18.265	19.265	-0.058174								0	0	0	0.33661	1	2047	2047		20.454	1.1966	1		+		55517	19083	31886	31887	67825	67825					-0.012064835715818845
VVAMGDWHIA	10	Unmodified	_VVAMGDWHIA_					0	0	0			REV__ENSG00000215912|ENST00000401095|TTC34	REV__ENSG00000215912|ENST00000401095|TTC34	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7737426757812	2	549.773677	1097.5328	0.31902	0.00017539	-1.0754	-0.00059124	-0.75641	-0.00041585	549.7729926620975	19.245	1.4333	19.189	18.573	20.006	-0.055693					85	50	2	0	0	0	0.30079	1	2047	2047		20.454	7.9221	1	395100	+		55518	19083	31886	31887	67826	67826					-0.012064835715818845
VVAMGDWHIA	10	Unmodified	_VVAMGDWHIA_					0	0	0			REV__ENSG00000215912|ENST00000401095|TTC34	REV__ENSG00000215912|ENST00000401095|TTC34	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	549.773677	1097.5328	0.33232	0.0001827	-1.1651	-0.00064056	-0.83282	-0.00045786	549.7730873704561	19.248	1.5953	19.132	18.503	20.098	-0.11592	-0.010422	6.1453E-06	NaN	20.454	111	55	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348580	+		55519	19083	31886	31887							-0.012064835715818845
VVATLEVRG	9	Unmodified	_VVATLEVRG_					0	0	0		ENST00000509751.1_1_4:3213670-3214487:+|nuORF	ENST00000509751.1_1_4:3213670-3214487:+|nuORF	ENST00000509751.1_1_4:3213670-3214487:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.2836608886719	2	472.282192	942.549831	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.425	1	92.514	92.014	93.014	0.089195								0	0	0	0.22377	1	24577	24577		14.838	3.198	1				55520	11364	31887	31888	67827	67827					0.0762576030585933
VVAVFFAPF	9	Unmodified	_VVAVFFAPF_					0	0	0		ENSG00000135973|ENST00000258456|GPR45	ENSG00000135973|ENST00000258456|GPR45	ENSG00000135973|ENST00000258456|GPR45	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7557067871094	2	498.781296	995.54804	0.28571	0.00014251	1.0007	0.00049915	1.2864	0.00064165	498.7817315951395	74.054	1.7516	74.106	72.654	74.405	0.052361					106	62	3	0	0	0	0.25811	1	18526	18526		2.3027	0	1	562520			55521	3930	31888	31889	67828	67828					0.05008751287903124
VVAVHIYIE	9	Unmodified	_VVAVHIYIE_					0	0	0		ENSG00000006116|ENST00000005284|CACNG3	ENSG00000006116|ENST00000005284|CACNG3	ENSG00000006116|ENST00000005284|CACNG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.268310546875	2	521.800217	1041.58588	0.45853	0.00023926	-1.3188	-0.00068815	-0.86027	-0.00044889	521.7983946598446	37.312	0.30437	37.4	37.247	37.552	0.087406					13	10	2	0	0	0	0.24542	1	7707	7707		14.582	6.6715	1	86678			55522	353	31889	31890	67829	67829					0.06675217482688822
VVAVHIYIE	9	Unmodified	_VVAVHIYIE_					0	0	0		ENSG00000006116|ENST00000005284|CACNG3	ENSG00000006116|ENST00000005284|CACNG3	ENSG00000006116|ENST00000005284|CACNG3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.800217	1041.58588	0.7558	0.00039438	-4.9909	-0.0026042	-4.2351	-0.0022099	521.7979747065895	37.115	0.33195	37.115	36.875	37.207	0	-0.14248	-0.00089424	NaN	26.341	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116110			55523	353	31889	31890							0.06675217482688822
VVAVRPLE	8	Unmodified	_VVAVRPLE_					0	0	0			REV__ENST00000562918.5_1_16:31368788-31369076:+|nuORF	REV__ENST00000562918.5_1_16:31368788-31369076:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7678527832031	2	441.774003	881.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.553	1	40.553	40.053	41.053	0								0	0	0	0.22807	1	8659	8659		39.957	3.8303	1		+		55524	22320	31890	31891	67830	67830					0.08794679139759864
VVCRDRKSGLL	11	Unmodified	_VVCRDRKSGLL_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.9082946777344	3	415.908052	1244.70233	0.13069	5.4356E-05	0.22672	9.4296E-05	0.35742	0.00014865	415.90809128753983	33.668	2.2487	33.668	32.251	34.5	0					207	80	4	0	0	0	0.37965	1	6454	6454		7.4771	0	1	1251100			55525	3803	31891	31892	67831	67831					0.08976212710967957
VVCWILTLNVE	11	Unmodified	_VVCWILTLNVE_					0	0	0			REV__nc|ENSG00000167895|Q8IU68-2|TMC8	REV__nc|ENSG00000167895|Q8IU68-2|TMC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8882751464844	3	430.237175	1287.68969	-0.26561	-0.00011427	2.9364	0.0012634	2.6708	0.0011491	430.2373913078538	22.579	0.089071	22.579	22.533	22.622	0					4	2	2	0	0	0	0.33287	1	3191	3191		2.8433	1.6285	1	22628	+		55526	17419	31892	31893	67832	67832					0.057357565280653944
VVDALLIIDG	10	Unmodified	_VVDALLIIDG_					0	0	0			REV__ENST00000554755.1_1_14:88420325-88420703:+|nuORF	REV__ENST00000554755.1_1_14:88420325-88420703:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7979125976562	2	514.305332	1026.59611	0.19651	0.00010107	3.179	0.001635	3.3755	0.001736	514.3071994411077	17.349	0.59735	17.288	17.079	17.676	-0.060429					34	20	2	0	0	0	0.38233	1	1699	1699		6.7232	1.9672	1	29005	+		55527	22237	31893	31894	67833	67833					0.08387780417297108
VVDALLIIDG	10	Unmodified	_VVDALLIIDG_					0	0	0			REV__ENST00000554755.1_1_14:88420325-88420703:+|nuORF	REV__ENST00000554755.1_1_14:88420325-88420703:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7777709960938	2	514.305332	1026.59611	0.19651	0.00010107	3.179	0.001635	3.3755	0.001736	514.3071994411077	17.349	0.59735	17.288	17.079	17.676	-0.060429					34	20	2	0	0	0	0.32033	1	1683	1683		3.5965	0	1	29005	+		55528	22237	31893	31894	67834	67834					0.08387780417297108
VVDASFFLK	9	Unmodified	_VVDASFFLK_					0	0	0		ENST00000507860.1_1_5:138629450-138650445:+|nuORF;ENST00000513121.1_1_5:138629450-138650445:+|nuORF;ENST00000512876.5_1_5:138629414-138653336:+|nuORF	ENST00000507860.1_1_5:138629450-138650445:+|nuORF	ENST00000507860.1_1_5:138629450-138650445:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2869262695312	2	513.286943	1024.55933	0.72256	0.00037088	-1.389	-0.00071298	-0.66649	-0.0003421	513.2859861260906	60.606	0.4953	60.606	60.441	60.936	0					37	17	3	0	0	0	0.013404	3	14826	14826;14835;14885		74.2	36.226	1	1275000			55529	11343	31894	31895	67835;67836;67837	67835					0.04803528591378381
VVDASFFLK	9	Unmodified	_VVDASFFLK_					0	0	0		ENST00000507860.1_1_5:138629450-138650445:+|nuORF;ENST00000513121.1_1_5:138629450-138650445:+|nuORF;ENST00000512876.5_1_5:138629414-138653336:+|nuORF	ENST00000507860.1_1_5:138629450-138650445:+|nuORF	ENST00000507860.1_1_5:138629450-138650445:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2863159179688	2	513.286943	1024.55933	0.61191	0.00031408	-1.0991	-0.00056416	-0.48721	-0.00025008	513.2861742263319	60.512	0.50071	60.608	60.448	60.948	0.096161					41	17	3	0	0	0	0.015924	1	14844	14844		70.332	49.878	1	1331100			55530	11343	31894	31895	67838	67838					0.04803528591378381
VVDASFFLK	9	Unmodified	_VVDASFFLK_					0	0	0		ENST00000507860.1_1_5:138629450-138650445:+|nuORF;ENST00000513121.1_1_5:138629450-138650445:+|nuORF;ENST00000512876.5_1_5:138629414-138653336:+|nuORF	ENST00000507860.1_1_5:138629450-138650445:+|nuORF	ENST00000507860.1_1_5:138629450-138650445:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2855834960938	2	513.286943	1024.55933	0.65518	0.00033629	-1.2948	-0.00066462	-0.63965	-0.00032833	513.2858585753004	60.606	0.42772	60.596	60.461	60.888	-0.0094566					40	15	3	0	0	0	0.013404	1	14832	14832		74.2	34.25	1	1234800			55531	11343	31894	31895	67839	67839					0.04803528591378381
VVDGTFSHY	9	Unmodified	_VVDGTFSHY_					0	0	0			REV__ENST00000531346.1_1_11:120196007-120201221:+|nuORF	REV__ENST00000531346.1_1_11:120196007-120201221:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2501220703125	2	512.740357	1023.46616	0.043455	2.2281E-05	1.8547	0.00095099	1.8982	0.00097327	512.741255085284	34.226	0.36899	34.293	34.066	34.435	0.06636					19	12	2	0	0	0	0.24913	1	6736	6736		12.532	0.89125	1	107800	+		55532	18140	31895	31896	67840	67840					-0.04463395861853314
VVDNRRHQRL	10	Unmodified	_VVDNRRHQRL_					0	0	0			REV__TNFRSF21|p.L570Sfs*3|1|0.07|ENSG00000146072|chr6:47234700-47234701|-/GAAGA|frameshift_variant	REV__TNFRSF21|p.L570Sfs*3|1|0.07|ENSG00000146072|chr6:47234700-47234701|-/GAAGA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.888427734375	3	431.581326	1291.72215	-0.20507	-8.8504E-05	0.38779	0.00016736	0.18272	7.8859E-05	431.58149912906913	22.606	0.35871	22.518	22.352	22.711	-0.087608					27	12	3	0	0	0	0.32068	1	3240	3240		3.5871	0	1	39783	+		55533	16327	31896	31897	67841	67841					0.08795724765923296
VVDPAIVL	8	Unmodified	_VVDPAIVL_					0	0	0		nc|ENSG00000183423|Q3SXY7-2|LRIT3;ENSG00000183423|ENST00000594814|LRIT3	nc|ENSG00000183423|Q3SXY7-2|LRIT3	nc|ENSG00000183423|Q3SXY7-2|LRIT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2575988769531	2	413.257654	824.500755	0.24297	0.00010041	-0.2497	-0.00010319	-0.0067288	-2.7807E-06	413.2574679311337	66.805	1.5119	66.889	66.494	68.006	0.083824					121	53	4	0	0	0	0.2157	1	16672	16672		40.449	0	1	5234900			55534	7367	31897	31898	67842	67842					0.08148472016898722
VVDPTDPKTL	10	Unmodified	_VVDPTDPKTL_					0	0	0		ENST00000544520.5_1_15:72546082-72558314:-|nuORF;nc|ENSG00000137817|Q2NL67-3|PARP6;nc|ENSG00000137817|Q2NL67-2|PARP6;ENSG00000137817|ENST00000569795|PARP6	ENST00000544520.5_1_15:72546082-72558314:-|nuORF	ENST00000544520.5_1_15:72546082-72558314:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7975463867188	2	542.797872	1083.58119	0.074706	4.055E-05	-0.2085	-0.00011318	-0.1338	-7.2625E-05	542.7976427020774	99.14	1.2866	99.14	98.646	99.933	0					453	162	4	0	0	0	0.39935	1	26641	26641		3.5965	0.60125	1	854180			55535	4081	31898	31899	67843	67843					0.04274288549299854
VVDQTTLMK	9	Oxidation (M)	_VVDQTTLM(Oxidation (M))K_		VVDQTTLM(1)K		VVDQTTLM(77)K	0	0	1		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.7786254882812	2	525.778625	1049.5427	0.44794	0.00023552	-0.5044	-0.0002652	-0.056461	-2.9686E-05	525.7782970612836	24.359	1.2129	24.359	23.998	25.21	0					84	41	3	0	0	0	0.011547	2	3720	3665;3720		77.049	51.649	1	322490			55536	7854	31899	31900	67844;67845	67845		852			0.019906596431155776
VVDQTTLMK	9	Oxidation (M)	_VVDQTTLM(Oxidation (M))K_		VVDQTTLM(1)K		VVDQTTLM(86)K	0	0	1		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.7786865234375	2	525.778625	1049.5427	0.45502	0.00023924	-0.52408	-0.00027555	-0.069058	-3.6309E-05	525.7782403710189	24.499	0.98287	24.427	24.024	25.007	-0.072559					75	33	3	0	0	0	0.0058682	2	3759	3712;3759		85.764	53.459	1	393160			55537	7854	31899	31900	67846;67847	67847		852			0.019906596431155776
VVDQTTLMK	9	Oxidation (M)	_VVDQTTLM(Oxidation (M))K_		VVDQTTLM(1)K		VVDQTTLM(65)K	0	0	1		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7786865234375	2	525.778625	1049.5427	0.33782	0.00017762	-0.50787	-0.00026703	-0.17005	-8.9407E-05	525.7783082119321	24.496	1.1518	24.457	24.049	25.201	-0.038927					94	39	4	0	0	0	0.019446	1	3752	3752		64.927	45.67	1	368900			55538	7854	31899	31900	67848	67848		852			0.019906596431155776
VVDRSWDQDL	10	Unmodified	_VVDRSWDQDL_					0	0	0		ENST00000343200.9_2_5:82767617-82767806:+|nuORF	ENST00000343200.9_2_5:82767617-82767806:+|nuORF	ENST00000343200.9_2_5:82767617-82767806:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.5714416503906	3	411.535048	1231.58332	0.39987	0.00016456	0.17208	7.0816E-05	0.57195	0.00023538	411.5352566950081	32.528	0.57315	32.583	32.317	32.891	0.055309					51	20	4	0	0	0	0.3183	1	6227	6227		5.4027	0	1	439610			55539	9541	31900	31901	67849	67849					-0.023212827129100333
VVDVPEVLGK	10	Unmodified	_VVDVPEVLGK_					0	0	0			REV__ENSG00000196924|ENST00000369850|FLNA	REV__ENSG00000196924|ENST00000369850|FLNA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.258056640625	2	527.810782	1053.60701	0.092838	4.9001E-05	-0.41844	-0.00022086	-0.3256	-0.00017186	528.3123811911997	13.214	0.42284	13.146	12.965	13.388	-0.067496					37	14	4	0	0	0	0.32054	1	338	338		3.2813	0	1	65058	+		55540	18696	31901	31902	67850	67850					0.08235182791577245
VVDVPEVLGK	10	Unmodified	_VVDVPEVLGK_					0	0	0			REV__ENSG00000196924|ENST00000369850|FLNA	REV__ENSG00000196924|ENST00000369850|FLNA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	527.810782	1053.60701	0.16726	8.8281E-05	-0.83945	-0.00044307	-0.67219	-0.00035479	528.3121307270561	13.191	0.50661	13.191	12.977	13.484	0	0.024324	9.4232E-05	NaN	3.2813	29	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58400	+		55541	18696	31901	31902							0.08235182791577245
VVDVPEVLGK	10	Unmodified	_VVDVPEVLGK_					0	0	0			REV__ENSG00000196924|ENST00000369850|FLNA	REV__ENSG00000196924|ENST00000369850|FLNA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	527.810782	1053.60701	0.089058	4.7006E-05	-1.7081	-0.00090156	-1.6191	-0.00085455	528.3118597387543	13.263	0.3826	13.164	12.98	13.362	-0.099291	-0.0032418	-0.00082274	NaN	3.2813	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75013	+		55542	18696	31901	31902							0.08235182791577245
VVDYPNSAK	9	Unmodified	_VVDYPNSAK_					0	0	0		ENST00000463307.5_1_7:73107559-73112213:+|nuORF;ENST00000436944.5_1_7:73101164-73117856:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;ENST00000487006.2_1_7:73101416-73107745:+|nuORF;ENST00000421744.5_1_7:73101164-73110778:+|nuORF;ENST00000432522.5_1_7:73101195-73108381:+|nuORF;ENST00000496153.5_1_7:73097949-73108381:+|nuORF;nc|ENSG00000071462|O43709-3|BUD23	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.75579833984375	2	496.756007	991.497461	0.23485	0.00011666	0.18523	9.2012E-05	0.42008	0.00020868	496.7561212240587	22.606	0.49035	22.519	22.245	22.736	-0.087608					34	17	3	0	0	0	0.24467	1	3200	3200		17.113	5.4726	1	116160			55543	957	31902	31903	67851	67851					0.0013717717223471482
VVDYPNSAK	9	Unmodified	_VVDYPNSAK_					0	0	0		ENST00000463307.5_1_7:73107559-73112213:+|nuORF;ENST00000436944.5_1_7:73101164-73117856:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;ENST00000487006.2_1_7:73101416-73107745:+|nuORF;ENST00000421744.5_1_7:73101164-73110778:+|nuORF;ENST00000432522.5_1_7:73101195-73108381:+|nuORF;ENST00000496153.5_1_7:73097949-73108381:+|nuORF;nc|ENSG00000071462|O43709-3|BUD23	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7560729980469	2	496.756007	991.497461	0.16064	7.98E-05	-0.11944	-5.9333E-05	0.041201	2.0467E-05	496.75574978899664	22.581	0.52644	22.536	22.209	22.735	-0.044867					38	17	3	0	0	0	0.24467	1	3211	3211		17.113	5.4726	1	133920			55544	957	31902	31903	67852	67852					0.0013717717223471482
VVDYPNSAK	9	Unmodified	_VVDYPNSAK_					0	0	0		ENST00000463307.5_1_7:73107559-73112213:+|nuORF;ENST00000436944.5_1_7:73101164-73117856:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;ENST00000487006.2_1_7:73101416-73107745:+|nuORF;ENST00000421744.5_1_7:73101164-73110778:+|nuORF;ENST00000432522.5_1_7:73101195-73108381:+|nuORF;ENST00000496153.5_1_7:73097949-73108381:+|nuORF;nc|ENSG00000071462|O43709-3|BUD23	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	ENST00000463307.5_1_7:73107559-73112213:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	496.756007	991.497461	0.23902	0.00011873	0.29352	0.00014581	0.53254	0.00026454	496.7560901184127	22.48	0.57673	22.48	22.16	22.736	0	-0.031203	0.00015634	NaN	17.113	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120890			55545	957	31902	31903							0.0013717717223471482
VVEADYRWPP	10	Unmodified	_VVEADYRWPP_					0	0	0			REV__ENSG00000164976|ENST00000297625|MYORG	REV__ENSG00000164976|ENST00000297625|MYORG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.9247131347656	3	411.208384	1230.60332	-0.26271	-0.00010803	3.166	0.0013019	2.9033	0.0011939	411.20943593460646	13.283	0.44596	13.216	13.022	13.468	-0.067495					21	15	2	0	0	0	0.32009	1	326	326		1.9064	0.57673	1	17470	+		55546	17198	31903	31904	67853	67853					-0.0027548698228656576
VVEGSFVYK	9	Unmodified	_VVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.276611328125	2	514.276575	1026.5386	0.08926	4.5904E-05	-0.068596	-3.5277E-05	0.020665	1.0627E-05	514.2764480028429	38.455	0.63412	38.455	38.269	38.903	0					39	22	2	0	0	0	0.053988	2	8039	8039;8090		51.415	20.779	1	784490			55547	8190	31904	31905	67854;67855	67854					0.026389382117031346
VVEGSFVYK	9	Unmodified	_VVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2763671875	2	514.276575	1026.5386	0.29981	0.00015418	-0.47629	-0.00024495	-0.17649	-9.0764E-05	514.2762443084256	38.416	0.73691	38.507	38.264	39.001	0.090881					40	26	2	0	0	0	0.12642	1	8050	8050		34.402	13.948	1	819310			55548	8190	31904	31905	67856	67856					0.026389382117031346
VVEGSFVYK	9	Unmodified	_VVEGSFVYK_					0	0	0		ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF	ENSG00000203879|ENST00000447750|GDI1	ENSG00000203879|ENST00000447750|GDI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2764282226562	2	514.276575	1026.5386	0.25045	0.0001288	-0.333	-0.00017125	-0.082542	-4.245E-05	514.2763187535144	38.364	0.60113	38.461	38.266	38.867	0.097527					38	21	2	0	0	0	0.048637	1	8002	8002		53.404	22.767	1	703710			55549	8190	31904	31905	67857	67857					0.026389382117031346
VVEGVNSSI	9	Unmodified	_VVEGVNSSI_					0	0	0			REV__ENSG00000196296|ENST00000395503|ATP2A1;REV__nc|ENSG00000074370|Q93084-4|ATP2A3	REV__ENSG00000196296|ENST00000395503|ATP2A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.5456237792969	2	452.242732	902.470912	-0.020076	-9.0793E-06	-0.71239	-0.00032217	-0.73246	-0.00033125	452.2418134827456	18.886	0.26782	18.886	18.738	19.006	0					18	9	3	0	0	0	0.23783	1	2095	2095		18.135	1.1927	1	23351	+		55550	18640;13788	31905	31906	67858	67858					0.0157748828091826
VVEGVNSSI	9	Unmodified	_VVEGVNSSI_					0	0	0			REV__ENSG00000196296|ENST00000395503|ATP2A1;REV__nc|ENSG00000074370|Q93084-4|ATP2A3	REV__ENSG00000196296|ENST00000395503|ATP2A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	452.242732	902.470912	-0.065492	-2.9618E-05	-0.28804	-0.00013026	-0.35353	-0.00015988	452.2425805688669	18.93	0.25772	18.872	18.788	19.046	-0.058172	-0.0069904	7.3744E-05	NaN	18.135	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30011	+		55551	18640;13788	31905	31906							0.0157748828091826
VVEHSGTM	8	Unmodified	_VVEHSGTM_					0	0	0		nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16;ENST00000485067.1_1_21:30426080-30426505:+|nuORF	nc|ENSG00000156256|Q9Y5T5-4|USP16	nc|ENSG00000156256|Q9Y5T5-4|USP16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8883361816406	2	430.202553	858.390553	-0.18103	-7.7881E-05	0.54399	0.00023402	0.36296	0.00015614	430.20266352680596	22.859	0.61333	22.814	22.583	23.197	-0.044867					26	21	2	0	0	0	0.34185	1	3236	3236		10.183	0	1	28624			55552	5227	31906	31907	67859	67859					-0.04430696313772842
VVEKPQPKK	9	Unmodified	_VVEKPQPKK_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.8265380859375	2	526.826766	1051.63898	0.15257	8.0378E-05	-0.55656	-0.00029321	-0.40399	-0.00021283	526.8263257805719	12.347	0.44637	12.347	12.135	12.582	0					36	15	4	0	0	0	0.11201	1	88	88		36.506	10.238	1	225130			55553	7985	31907	31908	67860	67860					0.11522595265364544
VVEKPQPKK	9	Unmodified	_VVEKPQPKK_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.826416015625	2	526.826766	1051.63898	0.17015	8.9638E-05	-0.57376	-0.00030227	-0.40361	-0.00021263	526.8263286430966	12.349	0.49358	12.252	12	12.493	-0.096607					37	18	4	0	0	0	0.11201	1	95	95		36.506	8.8774	1	246440			55554	7985	31907	31908	67861	67861					0.11522595265364544
VVEKPQPKK	9	Unmodified	_VVEKPQPKK_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.82666015625	2	526.826766	1051.63898	0.06033	3.1784E-05	-0.15358	-8.091E-05	-0.093249	-4.9126E-05	526.8264826883031	12.367	0.47961	12.299	12.1	12.579	-0.06806					35	16	4	0	0	0	0.11201	1	97	97		36.506	10.238	1	254710			55555	7985	31907	31908	67862	67862					0.11522595265364544
VVELDSPATLR	11	Unmodified	_VVELDSPATLR_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3341064453125	2	600.335153	1198.65575	0.46962	0.00028193	-1.0568	-0.00063442	-0.58716	-0.00035249	600.3346338446844	82.233	2.1935	82.209	81.045	83.239	-0.02404					129	90	2	0	0	0	0.45108	1	21299	21299		4.5289	0	1	430490			55556	3168	31908	31909	67863	67863					0.0643705136067183
VVEQVRVV	8	Unmodified	_VVEQVRVV_					0	0	0		ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.2847595214844	2	464.284734	926.554916	0.088338	4.1014E-05	0.50799	0.00023585	0.59632	0.00027686	464.2849311834222	35.621	0.77271	35.703	35.461	36.233	0.082355					62	27	3	0	0	0	0.35375	1	7136	7136		24.674	0	1	1522400			55557	3510	31909	31910	67864	67864					0.0887006416847953
VVESIFSALT	10	Unmodified	_VVESIFSALT_					0	0	0			REV__ENSG00000175336|ENST00000398189|APOF	REV__ENSG00000175336|ENST00000398189|APOF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.29638671875	2	533.294965	1064.57538	0.72618	0.00038727	0.86299	0.00046023	1.5892	0.0008475	533.2952917166864	36.081	0.80862	36.167	35.898	36.707	0.08625					58	28	3	0	0	0	0.33817	1	7328	7328		14.838	0.25658	1	673320	+		55558	17887	31910	31911	67865	67865					0.04567190037619184
VVEVGSKI	8	Unmodified	_VVEVGSKI_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000562784.1_1_15:72501984-72509791:-|nuORF;ENST00000412159.1_1_X:65718189-65718258:+|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.9075012207031	2	415.752736	829.490919	0.12456	5.1788E-05	-0.74166	-0.00030835	-0.6171	-0.00025656	415.752705036406	33.662	0.38284	33.662	33.456	33.839	0					14	13	2	0	0	0	0.33293	1	6507	6507		14.838	0	1	43815			55559	862	31911	31912	67866	67866					0.06935284011524345
VVFAVKQYISK	11	Unmodified	_VVFAVKQYISK_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000460366.5_1_1:150039914-150049098:+|nuORF	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.3820190429688	2	641.381906	1280.74926	0.19998	0.00012826	0.15622	0.0001002	0.3562	0.00022846	641.381816854747	46.203	0.37189	46.203	46.003	46.375	0					29	13	3	0	0	0	0.0015209	1	10407	10407		89.609	61.114	1	631470			55560	3986	31912	31913	67867	67867					0.12011395533750147
VVFAVKQYISK	11	Unmodified	_VVFAVKQYISK_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000460366.5_1_1:150039914-150049098:+|nuORF	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.61126708984375	3	427.923696	1280.74926	-0.25106	-0.00010744	0.40547	0.00017351	0.15441	6.6074E-05	427.92361692899703	46.193	0.61801	46.193	45.974	46.592	0					51	22	3	0	0	0	0.32757	1	10385	10385		10.527	5.9237	1	1821200			55561	3986	31912	31913	67868	67868					0.12011395533750147
VVFAVKQYISK	11	Unmodified	_VVFAVKQYISK_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000460366.5_1_1:150039914-150049098:+|nuORF	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	641.381906	1280.74926	0.18737	0.00012017	0.39076	0.00025063	0.57813	0.0003708	641.3817838372393	46.036	0.3884	46.096	45.871	46.259	0.059834	-0.04966	0.00037721	NaN	89.609	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	629890			55562	3986	31912	31913							0.12011395533750147
VVFAVKQYISK	11	Unmodified	_VVFAVKQYISK_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;ENST00000497638.2_1_1:150039914-150048408:+|nuORF;ENST00000460366.5_1_1:150039914-150049098:+|nuORF	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	641.381906	1280.74926	0.55013	0.00035285	-0.25594	-0.00016416	0.29419	0.00018869	641.3814669741026	46.073	0.3577	46.138	45.951	46.309	0.065048	-0.007847	-0.00045235	NaN	89.609	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	625860			55563	3986	31912	31913							0.12011395533750147
VVFDSPRNR	9	Unmodified	_VVFDSPRNR_					0	0	0		ENSG00000142623|ENST00000375471|PADI1;ENST00000468945.1_1_1:17672544-17674609:+|nuORF;ENSG00000159339|ENST00000375448|PADI4	ENSG00000142623|ENST00000375471|PADI1;ENSG00000159339|ENST00000375448|PADI4	ENSG00000142623|ENST00000375471|PADI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2936401367188	2	545.293622	1088.57269	0.27078	0.00014766	0.1185	6.4617E-05	0.38928	0.00021227	545.2936794154216	23.348	0.58919	23.348	23.11	23.699	0					29	20	2	0	0	0	0.28128	1	3444	3444		11.64	8.0438	1	93022			55564	4456;5401	31913	31914	67869	67869					0.031947794233246896
VVFDTSLQVKK	11	Unmodified	_VVFDTSLQVKK_					0	0	0		nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1;ENST00000549726.5_1_12:49398745-49412523:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1	nc|ENSG00000181929|P54619-2|PRKAG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.91485595703125	3	421.915089	1262.72344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.907	1	40.907	40.407	41.407	0								0	0	0	0.32862	1	8767	8767		12.929	0.70111	1				55565	7261	31914	31915	67870	67870					0.10258501291468747
VVFDTSLQVKK	11	Unmodified	_VVFDTSLQVKK_					0	0	0		nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1;ENST00000549726.5_1_12:49398745-49412523:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1	nc|ENSG00000181929|P54619-2|PRKAG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	631.7902221679688	2	632.368995	1262.72344	0.45083	0.00028509	-0.32695	-0.00020676	0.12387	7.8334E-05	632.3687108583218	40.747	0.36402	40.839	40.667	41.031	0.09267					19	13	2	0	0	0	0.32987	1	8717	8717		5.7834	3.0482	1	223350			55566	7261	31914	31915	67871	67871					0.10258501291468747
VVFDTSLQVKK	11	Unmodified	_VVFDTSLQVKK_					0	0	0		nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1;ENST00000549726.5_1_12:49398745-49412523:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1	nc|ENSG00000181929|P54619-2|PRKAG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.7899169921875	2	632.368995	1262.72344	0.36052	0.00022798	0.1012	6.3993E-05	0.46172	0.00029198	632.368854469642	40.638	0.34567	40.737	40.617	40.962	0.099407					18	12	2	0	0	0	0.33112	1	8712	8712		3.5871	0	1	226360			55567	7261	31914	31915	67872	67872					0.10258501291468747
VVFDTSLQVKK	11	Unmodified	_VVFDTSLQVKK_					0	0	0		nc|ENSG00000181929|P54619-2|PRKAG1;ENSG00000181929|ENST00000548065|PRKAG1;nc|ENSG00000181929|P54619-3|PRKAG1;ENST00000549726.5_1_12:49398745-49412523:-|nuORF	nc|ENSG00000181929|P54619-2|PRKAG1	nc|ENSG00000181929|P54619-2|PRKAG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	632.368995	1262.72344	0.216	0.00013659	0.34651	0.00021912	0.56251	0.00035571	632.3693328434686	40.873	0.32846	40.873	40.74	41.069	0	0.056327	0.00047544	NaN	5.7834	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144650			55568	7261	31914	31915							0.10258501291468747
VVFDTTLQVK	10	Unmodified	_VVFDTTLQVK_					0	0	0		ENST00000483775.1_1_7:151273415-151329218:-|nuORF;ENST00000491938.5_1_7:151269720-151329218:-|nuORF;ENST00000488258.5_1_7:151265789-151372578:-|nuORF;nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;nc|ENSG00000106617|Q9UGJ0-3|PRKAG2;ENSG00000106617|ENST00000287878|PRKAG2	ENST00000483775.1_1_7:151273415-151329218:-|nuORF	ENST00000483775.1_1_7:151273415-151329218:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.781982421875	2	575.329339	1148.64412	0.062209	3.5791E-05	-0.11529	-6.6329E-05	-0.053079	-3.0538E-05	575.329086344759	51.892	0.21815	51.891	51.736	51.954	-0.00080872					9	7	2	0	0	0	0.30978	1	12140	12140		19.362	7.1213	1	119230			55569	2089	31915	31916	67873	67873					0.07574854337326542
VVFDTTLQVK	10	Unmodified	_VVFDTTLQVK_					0	0	0		ENST00000483775.1_1_7:151273415-151329218:-|nuORF;ENST00000491938.5_1_7:151269720-151329218:-|nuORF;ENST00000488258.5_1_7:151265789-151372578:-|nuORF;nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;nc|ENSG00000106617|Q9UGJ0-3|PRKAG2;ENSG00000106617|ENST00000287878|PRKAG2	ENST00000483775.1_1_7:151273415-151329218:-|nuORF	ENST00000483775.1_1_7:151273415-151329218:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	575.329339	1148.64412	0.37517	0.00021585	-0.16634	-9.57E-05	0.20883	0.00012015	575.3292092139271	51.829	0.1116	51.878	51.787	51.899	0.049427	-0.006425	-5.5765E-05	NaN	19.362	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101280			55570	2089	31915	31916							0.07574854337326542
VVFDVQIPK	9	Unmodified	_VVFDVQIPK_					0	0	0		ENSG00000151655|ENST00000358415|ITIH2;CON__Q9TRI1	ENSG00000151655|ENST00000358415|ITIH2	ENSG00000151655|ENST00000358415|ITIH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.3307495117188	2	522.808042	1043.60153	0.65972	0.0003449	0.27315	0.0001428	0.93286	0.00048771	522.8082163849947	58.093	0.40232	58.076	57.953	58.355	-0.0172					19	14	2	0	0	0	0.25431	1	14044	14044		5.7319	0	1	184330			55571	4972	31916	31917	67874	67874					0.08147503999748551
VVFKDVIRPG	10	Unmodified	_VVFKDVIRPG_					0	0	0		nc|ENSG00000132002|P25685-2|DNAJB1;ENSG00000132002|ENST00000254322|DNAJB1	nc|ENSG00000132002|P25685-2|DNAJB1	nc|ENSG00000132002|P25685-2|DNAJB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8015747070312	2	565.340041	1128.66553	-0.79916	-0.0004518	-3.1249	-0.0017666	-3.9241	-0.0022184	565.338420016253	35.091	0.16948	35.091	35	35.17	0					8	5	2	0	0	0	0.31847	1	7006	7006		6.7232	2.3939	1	84625			55572	3604	31917	31918	67875	67875					0.1063428415668568
VVFKKMVP	8	Unmodified	_VVFKKMVP_					0	0	0		ENST00000428809.5_1_21:15516217-15516304:+|nuORF	ENST00000428809.5_1_21:15516217-15516304:+|nuORF	ENST00000428809.5_1_21:15516217-15516304:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.291259765625	2	474.290974	946.567395	0.026344	1.2495E-05	0.75137	0.00035637	0.77771	0.00036886	474.2911830140965	69.546	2.0319	69.546	68.841	70.873	0					118	73	2	0	0	0	0.45851	1	17587	17587		2.8892	0.31174	1	457690			55573	10443	31918	31919	67876	67876					0.09197384307151424
VVFKKMVP	8	Unmodified	_VVFKKMVP_					0	0	0		ENST00000428809.5_1_21:15516217-15516304:+|nuORF	ENST00000428809.5_1_21:15516217-15516304:+|nuORF	ENST00000428809.5_1_21:15516217-15516304:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.291748046875	2	474.290974	946.567395	0.18643	8.8424E-05	0.61375	0.0002911	0.80019	0.00037952	474.29113245327596	69.404	1.941	69.382	68.918	70.859	-0.022087					106	69	2	0	0	0	0.45851	1	17580	17580		2.8892	0	1	404040			55574	10443	31918	31919	67877	67877					0.09197384307151424
VVFKKMVP	8	Unmodified	_VVFKKMVP_					0	0	0		ENST00000428809.5_1_21:15516217-15516304:+|nuORF	ENST00000428809.5_1_21:15516217-15516304:+|nuORF	ENST00000428809.5_1_21:15516217-15516304:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	474.290974	946.567395	0.026344	1.2495E-05	0.75137	0.00035637	0.77771	0.00036886	474.2911830140965	69.546	2.0319	69.546	68.841	70.873	0	0.07233	9.065E-05	NaN	2.8892	118	73	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	457690			55575	10443	31918	31919							0.09197384307151424
VVFLFLYLVI	10	Unmodified	_VVFLFLYLVI_					0	0	0		OR10R2|p.M138Efs*8|1|0.04|ENSG00000198965|chr1:158480288-158480289|-/GAGGCTTTTATCC|frameshift_variant;ENSG00000198965|ENST00000641067|OR10R2;nc|ENSG00000198965|Q8NGX6|OR10R2	OR10R2|p.M138Efs*8|1|0.04|ENSG00000198965|chr1:158480288-158480289|-/GAGGCTTTTATCC|frameshift_variant	OR10R2|p.M138Efs*8|1|0.04|ENSG00000198965|chr1:158480288-158480289|-/GAGGCTTTTATCC|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.2795104980469	3	409.258016	1224.75222	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.264	1	14.159	13.659	14.659	-0.10466								0	0	0	0.38196	1	675	675		0.77653	0	1				55576	8178	31919	31920	67878	67878					0.14883270658538095
VVFLMLLPLP	10	Unmodified	_VVFLMLLPLP_					0	0	0		ENST00000231368.9_1_5:96366436-96366532:+|nuORF	ENST00000231368.9_1_5:96366436-96366532:+|nuORF	ENST00000231368.9_1_5:96366436-96366532:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8281860351562	2	571.356314	1140.69807	-0.11452	-6.5433E-05	0.0042603	2.4341E-06	-0.11026	-6.2999E-05	571.3565196043032	12.414	0.19445	12.414	12.332	12.526	0					7	5	2	0	0	0	0.32176	1	147	147		0	0	1	14060			55577	8862	31920	31921	67879	67879					0.13335355235358293
VVFLVSTRKIH	11	Unmodified	_VVFLVSTRKIH_					0	0	0		nc|ENSG00000165271|Q9H6R4-3|NOL6;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6;ENST00000464829.5_1_9:33462182-33469499:-|nuORF	nc|ENSG00000165271|Q9H6R4-3|NOL6;ENST00000464829.5_1_9:33462182-33469499:-|nuORF	ENST00000464829.5_1_9:33462182-33469499:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8982543945312	2	649.900797	1297.78704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.341	1	93.341	92.841	93.841	0								0	0	0	0.35732	1	24858	24858		4.897	0	1				55578	5943;10788	31921	31922	67880	67880					0.15005906519218115
VVFLVSTRKIH	11	Unmodified	_VVFLVSTRKIH_					0	0	0		nc|ENSG00000165271|Q9H6R4-3|NOL6;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6;ENST00000464829.5_1_9:33462182-33469499:-|nuORF	nc|ENSG00000165271|Q9H6R4-3|NOL6;ENST00000464829.5_1_9:33462182-33469499:-|nuORF	ENST00000464829.5_1_9:33462182-33469499:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8986206054688	2	649.900797	1297.78704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.464	1	93.464	92.964	93.964	0								0	0	0	0.37548	1	24895	24895		1.1933	0	1				55579	5943;10788	31921	31922	67881	67881					0.15005906519218115
VVFLVSTRKIH	11	Unmodified	_VVFLVSTRKIH_					0	0	0		nc|ENSG00000165271|Q9H6R4-3|NOL6;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6;ENST00000464829.5_1_9:33462182-33469499:-|nuORF	nc|ENSG00000165271|Q9H6R4-3|NOL6;ENST00000464829.5_1_9:33462182-33469499:-|nuORF	ENST00000464829.5_1_9:33462182-33469499:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8984985351562	2	649.900797	1297.78704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.184	1	93.271	92.771	93.771	0.08667								0	0	0	0.34302	1	24807	24807		8.1555	0	1				55580	5943;10788	31921	31922	67882	67882					0.15005906519218115
VVFLVSTRKIH	11	Unmodified	_VVFLVSTRKIH_					0	0	0		nc|ENSG00000165271|Q9H6R4-3|NOL6;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6;ENST00000464829.5_1_9:33462182-33469499:-|nuORF	nc|ENSG00000165271|Q9H6R4-3|NOL6;ENST00000464829.5_1_9:33462182-33469499:-|nuORF	ENST00000464829.5_1_9:33462182-33469499:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8984985351562	2	649.900797	1297.78704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.33	1	93.417	92.917	93.917	0.08667								0	0	0	0.34302	1	24851	24851		8.1555	0	1				55581	5943;10788	31921	31922	67883	67883					0.15005906519218115
VVFMVLALV	9	Unmodified	_VVFMVLALV_					0	0	0		nc|ENSG00000188833|Q5MY95-2|ENTPD8;ENSG00000188833|ENST00000371506|ENTPD8	nc|ENSG00000188833|Q5MY95-2|ENTPD8	nc|ENSG00000188833|Q5MY95-2|ENTPD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.8065490722656	2	495.806457	989.598361	0.38197	0.00018939	-0.25118	-0.00012454	0.13079	6.4847E-05	495.8061848841332	80.865	1.0173	80.865	80.657	81.675	0					141	47	4	0	0	0	0.32415	1	21117	21117		5.2307	5.2307	1	775710			55582	7779	31922	31923	67884	67884					0.1031453762137744
VVFQADDERNY	11	Unmodified	_VVFQADDERNY_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2301025390625	3	452.545724	1354.61534	0.027838	1.2598E-05	-1.1656	-0.00052747	-1.1377	-0.00051487	452.5455823592091	19.148	0.91399	19.092	18.791	19.705	-0.055693					92	31	5	0	0	0	0.33146	1	2175	2175		6.6235	0	1	414980			55583	6167	31923	31924	67885	67885					-0.0477791502976288
VVFRDPYRFK	10	Unmodified	_VVFRDPYRFK_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.9154052734375	3	442.915423	1325.72444	-0.1255	-5.5588E-05	0.15662	6.937E-05	0.031116	1.3782E-05	442.91546282299015	39.381	0.89542	39.381	39.073	39.968	0					95	32	4	0	0	0	0.10726	2	8299	8299;8350		46.475	27.331	1	1330900			55584	5505	31924	31925	67886;67887	67886					0.0746076045099926
VVFRDPYRFK	10	Unmodified	_VVFRDPYRFK_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.9153137207031	3	442.915423	1325.72444	-0.034802	-1.5414E-05	0.079009	3.4994E-05	0.044207	1.958E-05	442.9154299021696	39.223	0.80229	39.315	39.027	39.83	0.09267					94	28	5	0	0	0	0.18007	3	8230	8230;8284;8338		35.08	20.862	1	1479800			55585	5505	31924	31925	67888;67889;67890	67888					0.0746076045099926
VVFRDPYRFK	10	Unmodified	_VVFRDPYRFK_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.9154357910156	3	442.915423	1325.72444	0.29524	0.00013077	-0.251	-0.00011117	0.044245	1.9597E-05	442.9152726867873	39.27	0.90279	39.37	39.046	39.949	0.099407					98	32	5	0	0	0	0.14043	2	8254	8254;8304		39.923	21.202	1	1705400			55586	5505	31924	31925	67891;67892	67891					0.0746076045099926
VVFRDPYRFKK	11	Unmodified	_VVFRDPYRFKK_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.6138916015625	3	485.613744	1453.8194	0.33549	0.00016292	-0.073442	-3.5665E-05	0.26205	0.00012725	485.61370684329614	32.75	1.2801	32.75	32.366	33.646	0					126	45	4	0	0	0	0.23269	3	6293	6247;6293;6347		28.271	9.9308	1	2456600			55587	5505	31925	31926	67893;67894;67895	67894					0.11064693922185143
VVFRDPYRFKK	11	Unmodified	_VVFRDPYRFKK_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.6138610839844	3	485.613744	1453.8194	0.4026	0.00019551	-0.14873	-7.2224E-05	0.25387	0.00012328	485.61368835502105	32.584	1.295	32.639	32.26	33.555	0.055309					143	46	5	0	0	0	0.22132	3	6252	6206;6252;6301		29.291	12.453	1	2355600			55588	5505	31925	31926	67896;67897;67898	67897					0.11064693922185143
VVFRDPYRFKK	11	Unmodified	_VVFRDPYRFKK_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.6138610839844	3	485.613744	1453.8194	0.30092	0.00014613	-0.022319	-1.0839E-05	0.2786	0.00013529	485.61375017529025	32.654	1.0929	32.708	32.336	33.429	0.054375					127	39	4	0	0	0	0.2777	3	6257	6207;6257;6299		24.229	11.303	1	2115200			55589	5505	31925	31926	67899;67900;67901	67900					0.11064693922185143
VVFRRKLEF	9	Unmodified	_VVFRRKLEF_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000557366.5_1_14:68270819-68282710:-|nuORF;nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.7879028320312	2	597.361308	1192.70806	0.1745	0.00010424	3.3114	0.0019781	3.4859	0.0020823	597.3630355390301	65.096	0.10794	65.185	65.135	65.243	0.088882					5	3	2	0	0	0	0.25879	1	16222	16222		4.756	0	1	117860			55590	971	31926	31927	67902	67902					0.11941679284950624
VVFSVTTVDLK	11	Unmodified	_VVFSVTTVDLK_					0	0	0		ENST00000489758.1_1_1:25072044-25124343:+|nuORF;ENSG00000169504|ENST00000374379|CLIC4	ENST00000489758.1_1_1:25072044-25124343:+|nuORF	ENST00000489758.1_1_1:25072044-25124343:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.8124389648438	2	604.350271	1206.68599	0.29058	0.00017561	0.032721	1.9775E-05	0.3233	0.00019539	604.35036977111	60.307	0.75486	60.307	60.065	60.819	0					50	27	3	0	0	0	0.28485	1	14726	14726		42.835	30.595	1	1039300			55591	6360	31927	31928	67903	67903					0.09091410025826008
VVFSVTTVDLK	11	Unmodified	_VVFSVTTVDLK_					0	0	0		ENST00000489758.1_1_1:25072044-25124343:+|nuORF;ENSG00000169504|ENST00000374379|CLIC4	ENST00000489758.1_1_1:25072044-25124343:+|nuORF	ENST00000489758.1_1_1:25072044-25124343:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.8115234375	2	604.350271	1206.68599	-0.0042014	-2.5391E-06	0.27295	0.00016496	0.26874	0.00016242	604.3503478405768	60.166	0.53063	60.261	60.047	60.577	0.095089					45	19	3	0	0	0	0.20836	1	14700	14700		68.76	48.345	1	1120600			55592	6360	31927	31928	67904	67904					0.09091410025826008
VVFSVTTVDLK	11	Unmodified	_VVFSVTTVDLK_					0	0	0		ENST00000489758.1_1_1:25072044-25124343:+|nuORF;ENSG00000169504|ENST00000374379|CLIC4	ENST00000489758.1_1_1:25072044-25124343:+|nuORF	ENST00000489758.1_1_1:25072044-25124343:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.8116455078125	2	604.350271	1206.68599	0.19248	0.00011632	0.06342	3.8328E-05	0.2559	0.00015465	604.3502481504809	60.23	0.51715	60.219	59.997	60.514	-0.011486					39	18	3	0	0	0	0.27047	1	14726	14726		48.073	28.711	1	1059000			55593	6360	31927	31928	67905	67905					0.09091410025826008
VVFVGNFLR	9	Unmodified	_VVFVGNFLR_					0	0	0		ENSG00000120137|ENST00000239231|PANK3;nc|ENSG00000125779|Q9BZ23-2|PANK2;nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2;ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1;nc|ENSG00000152782|Q8TE04-3|PANK1	ENSG00000120137|ENST00000239231|PANK3;ENSG00000152782|ENST00000307534|PANK1	ENSG00000120137|ENST00000239231|PANK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3004760742188	2	525.808377	1049.6022	0.60704	0.00031919	0.13891	7.3038E-05	0.74594	0.00039222	525.8082635595757	63.876	0.70897	63.969	63.711	64.42	0.09288					41	25	3	0	0	0	0.090484	1	15870	15870		46.021	21.347	1	298930			55594	2929;5040	31928	31929	67906	67906					0.07938343439445816
VVFVGNFLR	9	Unmodified	_VVFVGNFLR_					0	0	0		ENSG00000120137|ENST00000239231|PANK3;nc|ENSG00000125779|Q9BZ23-2|PANK2;nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2;ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1;nc|ENSG00000152782|Q8TE04-3|PANK1	ENSG00000120137|ENST00000239231|PANK3;ENSG00000152782|ENST00000307534|PANK1	ENSG00000120137|ENST00000239231|PANK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.3004150390625	2	525.808377	1049.6022	0.72772	0.00038264	-0.21302	-0.00011201	0.5147	0.00027063	525.8081701877688	64.009	0.72474	63.999	63.718	64.443	-0.0095291					35	26	2	0	0	0	0.14076	1	15908	15908		32.305	9.1571	1	325700			55595	2929;5040	31928	31929	67907	67907					0.07938343439445816
VVFVIDPGFAK	11	Unmodified	_VVFVIDPGFAK_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.3424682617188	2	596.342249	1190.66995	0.45715	0.00027262	-0.12531	-7.4729E-05	0.33184	0.00019789	596.3421440880429	66.931	1.5003	66.931	66.6	68.101	0					140	52	4	0	0	0	0.0016102	5	16780	16780;16822;16870;16926;16985		88.364	74.458	1	6696500			55596	2261	31929	31930	67908;67909;67910;67911;67912	67908					0.08223748579621315
VVFVIDPGFAK	11	Unmodified	_VVFVIDPGFAK_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.3423461914062	2	596.342249	1190.66995	0.47082	0.00028077	-0.13282	-7.9205E-05	0.33801	0.00020157	596.3421197288337	66.811	1.4562	66.895	66.572	68.028	0.083832					143	51	4	0	0	0	0.00045437	6	16727	16686;16727;16771;16821;16868;16917		104.48	85.227	1	7546600			55597	2261	31929	31930	67913;67914;67915;67916;67917;67918	67914					0.08223748579621315
VVFVIDPGFAK	11	Unmodified	_VVFVIDPGFAK_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.3424682617188	2	596.342249	1190.66995	0.22206	0.00013243	0.14757	8.8004E-05	0.36964	0.00022043	596.3422841160204	66.938	1.2777	66.924	66.634	67.912	-0.013596					130	44	4	0	0	0	2.0416E-05	5	16775	16727;16775;16817;16866;16933		114.5	95.24	1	7591200			55598	2261	31929	31930	67919;67920;67921;67922;67923	67920					0.08223748579621315
VVFVVFIH	8	Unmodified	_VVFVVFIH_					0	0	0		ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	ENSG00000164199|ENST00000405460|ADGRV1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7640686035156	2	480.289288	958.564024	0.40007	0.00019215	4.2874	0.0020592	4.6875	0.0022513	480.2913481873882	48.281	0.20571	48.281	48.18	48.386	0					8	6	2	0	0	0	0.34147	1	11040	11040		6.3541	0	1	89097			55599	5811	31930	31931	67924	67924					0.08308457524799451
VVGALAFF	8	Unmodified	_VVGALAFF_					0	0	0		ENST00000568633.1_1_16:88741538-88741892:+|nuORF	ENST00000568633.1_1_16:88741538-88741892:+|nuORF	ENST00000568633.1_1_16:88741538-88741892:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2333984375	2	412.239264	822.463976	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.719	1	76.687	76.187	77.187	-0.031487								0	0	0	0.3683	1	19757	19757		6.3541	0	1				55600	12004	31931	31932	67925	67925					0.045642201910027325
VVGAVVFQK	9	Unmodified	_VVGAVVFQK_					0	0	0		ENSG00000169223|ENST00000303127|LMAN2;ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF	ENSG00000169223|ENST00000303127|LMAN2	ENSG00000169223|ENST00000303127|LMAN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7897644042969	2	473.789653	945.564752	-0.065173	-3.0878E-05	0.42116	0.00019954	0.35599	0.00016866	473.7897269186237	39.888	1.4498	39.888	39.48	40.93	0					96	52	3	0	0	0	0.0017972	3	8462	8414;8462;8518		112.59	66.572	1	1585700			55601	6337	31932	31933	67926;67927;67928	67927					0.08979252173855912
VVGAVVFQK	9	Unmodified	_VVGAVVFQK_					0	0	0		ENSG00000169223|ENST00000303127|LMAN2;ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF	ENSG00000169223|ENST00000303127|LMAN2	ENSG00000169223|ENST00000303127|LMAN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.78973388671875	2	473.789653	945.564752	0.33029	0.00015649	-0.047873	-2.2682E-05	0.28241	0.0001338	473.78953351812913	39.738	1.4131	39.831	39.332	40.745	0.09267					101	50	4	0	0	0	0.0014051	3	8425	8378;8425;8466		117.6	73.192	1	1813700			55602	6337	31932	31933	67929;67930;67931	67930					0.08979252173855912
VVGAVVFQK	9	Unmodified	_VVGAVVFQK_					0	0	0		ENSG00000169223|ENST00000303127|LMAN2;ENST00000515209.5_1_5:176759089-176761331:-|nuORF;ENST00000504071.1_1_5:176759089-176761465:-|nuORF	ENSG00000169223|ENST00000303127|LMAN2	ENSG00000169223|ENST00000303127|LMAN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7897644042969	2	473.789653	945.564752	0.24482	0.00011599	0.020539	9.731E-06	0.26536	0.00012572	473.7895876793056	39.688	1.1555	39.788	39.539	40.694	0.099407					84	41	3	0	0	0	0.0014051	3	8405	8355;8405;8457		117.6	71.578	1	1798000			55603	6337	31932	31933	67932;67933;67934	67933					0.08979252173855912
VVGEGRGRRR	10	Unmodified	_VVGEGRGRRR_					0	0	0			REV__ENST00000369754.7_2_6:82462234-82462363:-|nuORF	REV__ENST00000369754.7_2_6:82462234-82462363:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2796020507812	2	571.336687	1140.65882	0.53773	0.00030722	1.4733	0.00084174	2.011	0.001149	571.3375436748219	52.707	0.32488	52.758	52.553	52.878	0.050571					20	11	2	0	0	0	0.31745	1	12412	12412		8.7454	2.985	1	307380	+		55604	20360	31933	31934	67935	67935					0.09411784048711525
VVGEQPEL	8	Unmodified	_VVGEQPEL_					0	0	0			REV__ENST00000461911.1_1_2:219132163-219134845:-|nuORF	REV__ENST00000461911.1_1_2:219132163-219134845:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.30572509765625	2	435.732	869.449448	-0.18241	-7.9481E-05	-0.24078	-0.00010492	-0.42319	-0.0001844	435.73219118806884	39.12	0.51884	39.213	39.003	39.522	0.09267					24	18	2	0	0	0	0.32778	1	8260	8260		14.582	5.2343	1	135550	+		55605	15351	31934	31935	67936	67936					0.009501032521825437
VVGGLPVEL	9	Unmodified	_VVGGLPVEL_					0	0	0			REV__ENSG00000114933|ENST00000403263|INO80D	REV__ENSG00000114933|ENST00000403263|INO80D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.7674255371094	2	441.768386	881.522219	0.19483	8.6071E-05	-0.034574	-1.5274E-05	0.16026	7.0798E-05	441.76812286651284	41.099	1.8638	41.189	39.775	41.639	0.090252					179	68	4	0	0	0	0.11517	1	8632	8632		36.044	3.7387	1	930600	+		55606	14855	31935	31936	67937	67937					0.07671857045625075
VVGGLPVEL	9	Unmodified	_VVGGLPVEL_					0	0	0			REV__ENSG00000114933|ENST00000403263|INO80D	REV__ENSG00000114933|ENST00000403263|INO80D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7675476074219	2	441.768386	881.522219	0.17188	7.5933E-05	-0.20391	-9.008E-05	-0.032023	-1.4147E-05	441.7680909165782	41.297	1.8546	41.393	39.702	41.557	0.096622					166	67	3	0	0	0	0.11517	1	8626	8626		36.044	3.7387	1	1121500	+		55607	14855	31935	31936	67938	67938					0.07671857045625075
VVGKLGHI	8	Unmodified	_VVGKLGHI_					0	0	0			REV__nc|ENSG00000144724|P23470-2|PTPRG	REV__nc|ENSG00000144724|P23470-2|PTPRG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2722473144531	2	411.763438	821.512323	0.14785	6.0881E-05	-0.1346	-5.5422E-05	0.013256	5.4584E-06	411.7633899791484	40.63	0.94969	40.729	40.173	41.123	0.099407					94	34	4	0	0	0	0.34046	1	8566	8566		9.3474	0	1	469440	+		55608	16255	31936	31937	67939	67939					0.0944271383089017
VVGPQSSSL	9	Unmodified	_VVGPQSSSL_					0	0	0		nc|ENSG00000273777|Q6UY09-2|CEACAM20;nc|ENSG00000273777|Q6UY09-5|CEACAM20;ENSG00000273777|ENST00000614924|CEACAM20	nc|ENSG00000273777|Q6UY09-2|CEACAM20	nc|ENSG00000273777|Q6UY09-2|CEACAM20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2370910644531	2	437.23745	872.460347	0.26636	0.00011646	0.003767	1.6471E-06	0.27013	0.00011811	437.23748044650176	77.359	1.0238	77.359	76.931	77.955	0					76	37	3	0	0	0	0.29176	1	20047	20047		10.074	0	1	549920			55609	8709	31937	31938	67940	67940					0.019015056264720442
VVGRGWVWP	9	Unmodified	_VVGRGWVWP_					0	0	0			REV__ENST00000293880.9_1_11:57100225-57103093:-|nuORF	REV__ENST00000293880.9_1_11:57100225-57103093:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3192138671875	2	528.292894	1054.57123	0.34576	0.00018266	0.4632	0.0002447	0.80896	0.00042737	528.7934528304082	19.5	0.64354	19.384	19.086	19.729	-0.11592					35	21	3	0	0	0	0.25879	1	2174	2174		4.756	0.42677	1	60722	+		55610	19769	31938	31939	67941	67941					0.04613190125201072
VVGSLTSLLI	10	Unmodified	_VVGSLTSLLI_					0	0	0		ENST00000481425.5_1_7:86825954-86846082:-|nuORF;ENSG00000135185|ENST00000257637|TMEM243;ENST00000474074.1_1_7:86828277-86848819:-|nuORF;ENST00000465976.1_1_7:86827133-86832342:-|nuORF	ENST00000481425.5_1_7:86825954-86846082:-|nuORF	ENST00000481425.5_1_7:86825954-86846082:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.94384765625	2	501.3157	1000.61685	0.54962	0.00027553	-0.76786	-0.00038494	-0.21824	-0.00010941	501.3150745524144	55.109	0.30047	55.109	54.974	55.274	0					15	10	2	0	0	0	0.30586	1	13123	13123		13.906	3.8321	1	235800			55611	3850	31939	31940	67942	67942					0.11656370796947613
VVGSLTSLLI	10	Unmodified	_VVGSLTSLLI_					0	0	0		ENST00000481425.5_1_7:86825954-86846082:-|nuORF;ENSG00000135185|ENST00000257637|TMEM243;ENST00000474074.1_1_7:86828277-86848819:-|nuORF;ENST00000465976.1_1_7:86827133-86832342:-|nuORF	ENST00000481425.5_1_7:86825954-86846082:-|nuORF	ENST00000481425.5_1_7:86825954-86846082:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.9434814453125	2	501.3157	1000.61685	0.60822	0.00030491	-0.42475	-0.00021294	0.18346	9.1973E-05	501.3153125783365	55.11	0.37395	55.181	54.997	55.371	0.070889					17	13	2	0	0	0	0.31267	1	13099	13099		14.838	4.6549	1	208580			55612	3850	31939	31940	67943	67943					0.11656370796947613
VVGTNIVKK	9	Unmodified	_VVGTNIVKK_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.3081970214844	2	479.30821	956.601866	0.53955	0.00025861	-0.37642	-0.00018042	0.16314	7.8193E-05	479.3079086860346	20.969	0.62895	20.859	20.637	21.266	-0.11003					36	21	3	0	0	0	0.16283	1	2704	2704		29.082	8.628	1	180670			55613	4432	31940	31941	67944	67944					0.12182923719603878
VVGTNIVKK	9	Unmodified	_VVGTNIVKK_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.3081970214844	2	479.30821	956.601866	0.45489	0.00021803	-0.17204	-8.246E-05	0.28285	0.00013557	479.30800797052893	20.866	0.56275	20.813	20.613	21.176	-0.05291					40	19	3	0	0	0	0.23767	1	2675	2675		18.146	3.3081	1	159450			55614	4432	31940	31941	67945	67945					0.12182923719603878
VVGTTVVGYLP	11	Unmodified	_VVGTTVVGYLP_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3041381835938	2	552.818607	1103.62266	0.22186	0.00012265	-0.29219	-0.00016153	-0.070333	-3.8881E-05	552.8182207842361	39.971	0.33077	39.971	39.831	40.161	0					20	11	2	0	0	0	0.41896	1	8525	8525		8.7454	0.58988	1	233350			55615	5367	31941	31942	67946	67946					0.07499469308618245
VVGVILYH	8	Unmodified	_VVGVILYH_					0	0	0			REV__ENSG00000151240|ENST00000280886|DIP2C	REV__ENSG00000151240|ENST00000280886|DIP2C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2700500488281	2	450.271096	898.527639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.22	1	82.196	81.696	82.696	-0.02404								0	0	0	0.3683	1	21435	21435		6.3541	0.59368	1		+		55616	13675	31942	31943	67947	67947					0.07431580628076517
VVHGGMSIFLK	11	Oxidation (M)	_VVHGGM(Oxidation (M))SIFLK_		VVHGGM(1)SIFLK		VVHGGM(95)SIFLK	0	0	1		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.3316040039062	2	602.331359	1202.64816	-0.40921	-0.00024648	0.68121	0.00041032	0.272	0.00016383	602.331748977045	34.539	0.9809	34.539	34.22	35.2	0					94	34	4	0	0	0	0.0073542	1	6832	6832		94.909	80.503	1	2138300			55617	9036	31943	31944	67948	67948		923			0.054946205593751074
VVHGGMSIFLK	11	Oxidation (M)	_VVHGGM(Oxidation (M))SIFLK_		VVHGGM(1)SIFLK		VVHGGM(110)SIFLK	0	0	1		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.3317260742188	2	602.331359	1202.64816	-0.44236	-0.00026645	0.60955	0.00036715	0.16719	0.00010071	602.3317412469646	34.412	1.1023	34.487	34.158	35.261	0.075306					104	39	4	0	0	0	0.0026123	1	6783	6783		114.5	95.135	1	2111500			55618	9036	31943	31944	67949	67949		923			0.054946205593751074
VVHGGMSIFLK	11	Oxidation (M)	_VVHGGM(Oxidation (M))SIFLK_		VVHGGM(1)SIFLK		VVHGGM(50)SIFLK	0	0	1		ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	ENST00000264995.7_1_3:131220431-131221595:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.330322265625	2	602.331359	1202.64816	-0.084335	-5.0798E-05	0.25737	0.00015502	0.17304	0.00010423	602.3314789821868	34.382	1.17	34.459	34.137	35.307	0.077015					104	41	4	0	0	0	0.062849	1	6834	6834		49.527	34.689	1	2127900			55619	9036	31943	31944	67950	67950		923			0.054946205593751074
VVHLQLSFWP	10	Unmodified	_VVHLQLSFWP_					0	0	0			REV__ENST00000357461.6_1_14:67937818-67938346:-|nuORF	REV__ENST00000357461.6_1_14:67937818-67938346:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.89111328125	3	409.229119	1224.66553	-0.39902	-0.00016329	2.5092	0.0010268	2.1102	0.00086355	409.56452703940124	13.15	0.33388	13.15	13.031	13.365	0					21	11	3	0	0	0	0.40756	1	344	344		2.086	0.63089	1	32478	+		55620	20216	31944	31945	67951	67951					0.06218284156716436
VVHPIKAA	8	Unmodified	_VVHPIKAA_					0	0	0		ENSG00000139874|ENST00000267377|SSTR1	ENSG00000139874|ENST00000267377|SSTR1	ENSG00000139874|ENST00000267377|SSTR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.1891174316406	2	417.763438	833.512323	-0.35344	-0.00014765	-0.85773	-0.00035833	-1.2112	-0.00050598	417.76296346341115	42.535	0.26913	42.535	42.383	42.652	0					15	9	2	0	0	0	0.34434	1	9290	9290		0	0	1	105780			55621	4270	31945	31946	67952	67952					0.08890713830885488
VVHVGSRLRQ	10	Unmodified	_VVHVGSRLRQ_					0	0	0			REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8430786132812	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.93	1	112.95	112.45	113.45	0.014824								0	0	0	0.3808	1	29385	29385		1.8442	0	1		+		55622	15448	31946	31947	67953	67953					0.10422436476960684
VVHVGSRLRQ	10	Unmodified	_VVHVGSRLRQ_					0	0	0			REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	REV__nc|ENSG00000130299|Q969Y2-3|GTPBP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8427124023438	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.35	1	115.37	114.87	115.87	0.018738								0	0	0	0.3808	1	29966	29966		1.8442	0	1		+		55623	15448	31946	31947	67954	67954					0.10422436476960684
VVIALVNR	8	Unmodified	_VVIALVNR_					0	0	0		ENSG00000164363|ENST00000324642|SLC6A18	ENSG00000164363|ENST00000324642|SLC6A18	ENSG00000164363|ENST00000324642|SLC6A18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.9153137207031	2	442.28982	882.565087	-0.056256	-2.4882E-05	-0.071595	-3.1666E-05	-0.12785	-5.6547E-05	442.2897196830201	39.183	0.49442	39.276	39.027	39.522	0.09267					33	17	3	0	0	0	0.33993	1	8230	8230		16.942	7.5949	1	179330			55624	5840	31947	31948	67955	67955					0.11910671893690505
VVIDLGEAFTK	11	Unmodified	_VVIDLGEAFTK_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10;ENST00000556312.5_1_14:58666935-58675849:+|nuORF	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.33447265625	2	596.334621	1190.65469	0.52995	0.00031603	0.20011	0.00011934	0.73006	0.00043536	596.3343655197336	62.678	0.43012	62.678	62.45	62.881	0					24	15	2	0	0	0	0.0075899	1	15483	15483		74.772	53.235	1	262590			55625	3600	31948	31949	67956	67956					0.06698836991745338
VVIDLGEAFTK	11	Unmodified	_VVIDLGEAFTK_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10;ENST00000556312.5_1_14:58666935-58675849:+|nuORF	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.3346557617188	2	596.334621	1190.65469	0.41638	0.0002483	-1.2837	-0.00076549	-0.86727	-0.00051718	596.3342284412008	62.623	0.44669	62.614	62.413	62.86	-0.0085526					32	16	3	0	0	0	0.011413	1	15470	15470		66.683	43.947	1	281870			55626	3600	31948	31949	67957	67957					0.06698836991745338
VVIDLGEAFTK	11	Unmodified	_VVIDLGEAFTK_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10;ENST00000556312.5_1_14:58666935-58675849:+|nuORF	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	596.334621	1190.65469	0.57464	0.00034268	-0.15439	-9.2067E-05	0.42025	0.00025061	596.3342910854763	62.576	0.51669	62.673	62.442	62.958	0.096985	0.018191	7.9232E-05	NaN	74.772	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272660			55627	3600	31948	31949							0.06698836991745338
VVIDPYLVYH	10	Unmodified	_VVIDPYLVYH_					0	0	0		ENST00000463267.5_1_8:95411790-95423517:-|nuORF;ENSG00000197275|ENST00000336148|RAD54B	ENST00000463267.5_1_8:95411790-95423517:-|nuORF	ENST00000463267.5_1_8:95411790-95423517:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.5563659667969	3	406.557013	1216.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.411	1	20.301	19.801	20.801	-0.11003								0	0	0	0.37048	1	2531	2531		6.1918	0.78914	1				55628	7949	31949	31950	67958	67958					0.049551581999367045
VVIDRNLLIL	10	Unmodified	_VVIDRNLLIL_					0	0	0		ENSG00000153208|ENST00000295408|MERTK;ENST00000473065.1_1_2:112754988-112760808:+|nuORF	ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.271240234375	2	584.376623	1166.73869	0.4239	0.00024771	-0.10048	-5.872E-05	0.32341	0.000189	584.3765097381165	71.979	0.51748	71.952	71.738	72.256	-0.027275					38	18	3	0	0	0	0.31323	1	18355	18355		15.248	0	1	254580			55629	5065	31950	31951	67959	67959					0.16199412879336705
VVIEFSPEEWA	11	Unmodified	_VVIEFSPEEWA_					0	0	0		ENST00000343776.9_1_1:227751395-227838673:+|nuORF;ENST00000608949.5_1_1:227751395-227838673:+|nuORF	ENST00000343776.9_1_1:227751395-227838673:+|nuORF	ENST00000343776.9_1_1:227751395-227838673:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.25347900390625	3	435.883566	1304.62887	-0.041305	-1.8004E-05	3.3297	0.0014514	3.2884	0.0014334	435.88528572422837	26.248	0.19372	26.226	26.073	26.266	-0.022238					8	6	2	0	0	0	0.3322	1	4296	4296		4.7159	1.1289	1	38174			55630	9547	31951	31952	67960	67960					-0.011260572505079836
VVIHQLNAPLW	11	Unmodified	_VVIHQLNAPLW_					0	0	0		ENSG00000169914|ENST00000375120|OTUD3;ENST00000466697.1_1_1:20216953-20224263:+|nuORF	ENSG00000169914|ENST00000375120|OTUD3	ENSG00000169914|ENST00000375120|OTUD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.888427734375	3	430.583674	1288.72919	-0.25242	-0.00010869	-0.10698	-4.6063E-05	-0.3594	-0.00015475	430.58372526247916	22.735	0.44805	22.647	22.461	22.909	-0.087608					25	15	2	0	0	0	0.33119	1	3240	3240		2.6312	0	1	63417			55631	6403	31952	31953	67961	67961					0.09637644593794903
VVIKGTLIK	9	Unmodified	_VVIKGTLIK_					0	0	0			REV__ENST00000472824.2_1_1:156693143-156694356:-|nuORF	REV__ENST00000472824.2_1_1:156693143-156694356:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.2575378417969	2	485.836603	969.658653	0.26082	0.00012671	0.73153	0.0003554	0.99235	0.00048212	485.8367831785837	31.442	0.22607	31.483	31.281	31.507	0.040991					9	7	2	0	0	0	0.25879	1	5878	5878		4.756	0	1	56581	+		55632	16161	31953	31954	67962	67962					0.1726097127614139
VVILGPVAD	9	Unmodified	_VVILGPVAD_					0	0	0		nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3	nc|ENSG00000105289|O95049-5|TJP3	nc|ENSG00000105289|O95049-5|TJP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.76806640625	2	441.768386	881.522219	-0.074926	-3.31E-05	-0.19397	-8.5688E-05	-0.26889	-0.00011879	441.7680973684311	96.114	0.78732	96.114	95.821	96.608	0					145	75	3	0	0	0	0.34374	3	25639	25639;25710;25733		2.3027	1.5091	1	410200			55633	1963	31954	31955	67963;67964;67965	67963					0.07671857045602337
VVINFDFPK	9	Unmodified	_VVINFDFPK_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.800537109375	2	539.800217	1077.58588	0.69535	0.00037535	-1.4655	-0.00079105	-0.77011	-0.0004157	539.7999129269316	64.12	2.517	64.12	63.607	66.124	0					210	91	3	0	0	0	1.6536E-07	3	15913	15871;15913;15962		173.69	116.22	1	8411800			55634	2308	31955	31956	67966;67967;67968	67967					0.05019217482708882
VVINFDFPK	9	Unmodified	_VVINFDFPK_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.800537109375	2	539.800217	1077.58588	0.58592	0.00031628	-1.501	-0.00081026	-0.91511	-0.00049398	539.7998703694556	63.985	3.8341	64.078	63.588	67.423	0.092876					244	139	3	0	0	0	1.6536E-07	3	15881	15836;15881;15928		173.69	118.18	1	8865000			55635	2308	31955	31956	67969;67970;67971	67970					0.05019217482708882
VVINFDFPK	9	Unmodified	_VVINFDFPK_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.800537109375	2	539.800217	1077.58588	0.72898	0.00039351	-1.5474	-0.00083529	-0.81842	-0.00044178	539.7998464253624	64.112	2.3671	64.102	63.434	65.801	-0.0095291					189	86	3	0	0	0	1.6536E-07	3	15911	15862;15911;15961		173.69	118.18	1	8981700			55636	2308	31955	31956	67972;67973;67974	67973					0.05019217482708882
VVINVNNILK	10	Unmodified	_VVINVNNILK_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3539428710938	2	563.353148	1124.69174	0.36067	0.00020318	1.084	0.00061066	1.4446	0.00081385	563.3534273487907	59.055	1.1367	59.146	58.821	59.957	0.091305					115	40	5	0	0	0	1.7383E-20	4	14340	14301;14340;14384;14428		214.41	168.39	1	7902400			55637	901	31956	31957	67975;67976;67977;67978	67976					0.13438553328182934
VVINVNNILK	10	Unmodified	_VVINVNNILK_					0	0	0		ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	ENSG00000069248|ENST00000261396|NUP133	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.3538208007812	2	563.353148	1124.69174	0.3735	0.00021041	1.2634	0.00071174	1.6369	0.00092216	563.3534943238107	59.133	1.0512	59.119	58.831	59.883	-0.014267					106	36	5	0	0	0	1.7383E-20	3	14379	14333;14379;14429		214.41	166.06	1	8123900			55638	901	31956	31957	67979;67980;67981	67980					0.13438553328182934
VVINYSIVK	9	Unmodified	_VVINYSIVK_					0	0	0		ENST00000556921.1_1_14:100551177-100572452:+|nuORF;ENST00000557637.1_1_14:100531783-100564000:+|nuORF;ENST00000554460.5_1_14:100540857-100568654:+|nuORF;nc|ENSG00000196405|Q9UI08-4|EVL;nc|ENSG00000196405|Q9UI08-3|EVL;nc|ENSG00000196405|Q9UI08-5|EVL;nc|ENSG00000196405|Q9UI08|EVL;ENSG00000196405|ENST00000392920|EVL	ENST00000556921.1_1_14:100551177-100572452:+|nuORF	ENST00000556921.1_1_14:100551177-100572452:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8162231445312	2	517.815867	1033.61718	0.53518	0.00027712	-0.43626	-0.0002259	0.098913	5.1219E-05	517.8156753006739	48.658	0.92616	48.702	48.442	49.368	0.044891					83	33	4	0	0	0	0.0073901	2	11167	11167;11212		83.429	50.643	1	3807200			55639	7857	31957	31958	67982;67983	67982					0.10171790516801593
VVINYSIVK	9	Unmodified	_VVINYSIVK_					0	0	0		ENST00000556921.1_1_14:100551177-100572452:+|nuORF;ENST00000557637.1_1_14:100531783-100564000:+|nuORF;ENST00000554460.5_1_14:100540857-100568654:+|nuORF;nc|ENSG00000196405|Q9UI08-4|EVL;nc|ENSG00000196405|Q9UI08-3|EVL;nc|ENSG00000196405|Q9UI08-5|EVL;nc|ENSG00000196405|Q9UI08|EVL;ENSG00000196405|ENST00000392920|EVL	ENST00000556921.1_1_14:100551177-100572452:+|nuORF	ENST00000556921.1_1_14:100551177-100572452:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.8157348632812	2	517.815867	1033.61718	0.33711	0.00017456	-0.2644	-0.00013691	0.072706	3.7648E-05	517.8157460442169	48.636	0.93869	48.668	48.387	49.326	0.032043					84	33	4	0	0	0	0.015924	1	11099	11099		70.332	42.703	1	3688700			55640	7857	31957	31958	67984	67984					0.10171790516801593
VVINYSIVK	9	Unmodified	_VVINYSIVK_					0	0	0		ENST00000556921.1_1_14:100551177-100572452:+|nuORF;ENST00000557637.1_1_14:100531783-100564000:+|nuORF;ENST00000554460.5_1_14:100540857-100568654:+|nuORF;nc|ENSG00000196405|Q9UI08-4|EVL;nc|ENSG00000196405|Q9UI08-3|EVL;nc|ENSG00000196405|Q9UI08-5|EVL;nc|ENSG00000196405|Q9UI08|EVL;ENSG00000196405|ENST00000392920|EVL	ENST00000556921.1_1_14:100551177-100572452:+|nuORF	ENST00000556921.1_1_14:100551177-100572452:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	517.815867	1033.61718	0.49785	0.00025779	-0.49408	-0.00025584	0.0037695	1.9519E-06	517.8155833690291	48.668	1.022	48.668	48.386	49.408	0	-0.011155	-8.8404E-05	NaN	83.429	75	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3395300			55641	7857	31957	31958							0.10171790516801593
VVITNQRRGPV	11	Unmodified	_VVITNQRRGPV_					0	0	0			REV__nc|ENSG00000172530|Q8N9N5-3|BANP	REV__nc|ENSG00000172530|Q8N9N5-3|BANP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.869140625	2	619.870028	1237.7255	-0.057748	-3.5796E-05	-0.26006	-0.0001612	-0.31781	-0.000197	619.8694425647374	97.597	0.96609	97.597	97.024	97.991	0					189	100	3	0	0	0	0.47546	1	25974	25974		1.3295	0	1	195890	+		55642	17719	31958	31959	67985	67985					0.11614974819917734
VVITNQRRGPV	11	Unmodified	_VVITNQRRGPV_					0	0	0			REV__nc|ENSG00000172530|Q8N9N5-3|BANP	REV__nc|ENSG00000172530|Q8N9N5-3|BANP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8693237304688	2	619.870028	1237.7255	0.20348	0.00012613	-0.46722	-0.00028961	-0.26374	-0.00016348	619.8692710448544	97.491	1.1283	97.485	96.973	98.101	-0.0055466					232	118	3	0	0	0	0.47546	1	25985	25985		1.3295	0	1	379940	+		55643	17719	31958	31959	67986	67986					0.11614974819917734
VVIYDDPVSY	10	Unmodified	_VVIYDDPVSY_					0	0	0		ENSG00000124564|ENST00000397060|SLC17A3;nc|ENSG00000124564|O00476|SLC17A3;SLC17A3|p.M212Nfs*26|1|0.05|ENSG00000124564|chr6:25850583-25850584|-/ATGTATTTCTTAT|frameshift_variant	ENSG00000124564|ENST00000397060|SLC17A3	ENSG00000124564|ENST00000397060|SLC17A3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.27197265625	2	585.289879	1168.56521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.56	1	32.56	32.06	33.06	0								0	0	0	0.34994	1	6218	6218		14.838	4.0143	1				55644	3165	31959	31960	67987	67987					-0.012334176876265701
VVKKSQIFSID	11	Unmodified	_VVKKSQIFSID_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.91497802734375	3	421.915089	1262.72344	0.11059	4.6658E-05	-0.5659	-0.00023876	-0.45532	-0.00019211	421.9149319352349	40.737	0.49742	40.83	40.611	41.109	0.09267					48	18	3	0	0	0	0.39244	1	8716	8716		12.228	4.3815	1	693460	+		55645	14911	31960	31961	67988	67988					0.10258501291468747
VVKKSQIFSID	11	Unmodified	_VVKKSQIFSID_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.8963928222656	3	421.915089	1262.72344	0.11059	4.6658E-05	-0.5659	-0.00023876	-0.45532	-0.00019211	421.9149319352349	40.737	0.49742	40.83	40.611	41.109	0.09267					48	18	3	0	0	0	0.32625	1	8684	8684		16.275	5.2093	1	693460	+		55646	14911	31960	31961	67989	67989					0.10258501291468747
VVKKSQIFSID	11	Unmodified	_VVKKSQIFSID_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.9151306152344	3	421.915089	1262.72344	-0.03192	-1.3468E-05	-0.24922	-0.00010515	-0.28114	-0.00011862	421.9150680042286	40.647	0.56217	40.747	40.505	41.068	0.099407					55	20	4	0	0	0	0.3826	1	8693	8693		13.519	4.2749	1	907270	+		55647	14911	31960	31961	67990	67990					0.10258501291468747
VVKKSQIFSID	11	Unmodified	_VVKKSQIFSID_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.8963317871094	3	421.915089	1262.72344	-0.03192	-1.3468E-05	-0.24922	-0.00010515	-0.28114	-0.00011862	421.9150680042286	40.647	0.56217	40.747	40.505	41.068	0.099407					55	20	4	0	0	0	0.32824	1	8676	8676		12.856	5.4269	1	907270	+		55648	14911	31960	31961	67991	67991					0.10258501291468747
VVKPASPVS	9	Unmodified	_VVKPASPVS_					0	0	0		chrX:70610543-70613253|397|28.71|0.16|7.46|-|1|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|41	chrX:70610543-70613253|397|28.71|0.16|7.46|-|1|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|41	chrX:70610543-70613253|397|28.71|0.16|7.46|-|1|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.26580810546875	2	442.26601	882.517468	-0.057043	-2.5228E-05	-0.21905	-9.6876E-05	-0.27609	-0.0001221	442.2659244963449	31.522	0.82719	31.565	30.968	31.795	0.042364					58	29	3	0	0	0	0.19747	1	5888	5888		24.021	5.8742	1	711660			55649	182	31961	31962	67992	67992					0.07150972902854846
VVKPASPVS	9	Unmodified	_VVKPASPVS_					0	0	0		chrX:70610543-70613253|397|28.71|0.16|7.46|-|1|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|41	chrX:70610543-70613253|397|28.71|0.16|7.46|-|1|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|41	chrX:70610543-70613253|397|28.71|0.16|7.46|-|1|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|41	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	442.26601	882.517468	0.19146	8.4675E-05	-0.17342	-7.6697E-05	0.01804	7.9784E-06	442.2659121171011	31.518	0.90499	31.558	30.959	31.864	0.040991	-0.0051858	5.5164E-05	NaN	24.021	71	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	576480			55650	182	31961	31962							0.07150972902854846
VVKQIRERVE	10	Unmodified	_VVKQIRERVE_					0	0	0			REV__ENST00000564987.1_1_16:23535694-23546228:-|nuORF	REV__ENST00000564987.1_1_16:23535694-23546228:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5784606933594	3	419.254216	1254.74082	0.091637	3.8419E-05	0.53179	0.00022296	0.62343	0.00026138	419.2544385957126	23.275	0.63149	23.23	22.925	23.556	-0.044867					40	22	2	0	0	0	0.3213	1	3495	3495		1.9064	0.45126	1	108120	+		55651	14370	31962	31963	67993	67993					0.12363841617116123
VVKYTQALFIN	11	Unmodified	_VVKYTQALFIN_					0	0	0		nc|ENSG00000132932|Q9NTI2-3|ATP8A2;nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2	nc|ENSG00000132932|Q9NTI2-3|ATP8A2	nc|ENSG00000132932|Q9NTI2-3|ATP8A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.595947265625	3	432.583451	1294.72852	-0.24685	-0.00010678	0.3001	0.00012982	0.053254	2.3037E-05	432.58357773903924	42.134	0.42644	42.134	41.851	42.277	0					31	14	3	0	0	0	0.36722	1	9168	9168		15.538	8.5014	1	879550			55652	3678	31963	31964	67994	67994					0.09294805154081587
VVKYTQALFIN	11	Unmodified	_VVKYTQALFIN_					0	0	0		nc|ENSG00000132932|Q9NTI2-3|ATP8A2;nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2	nc|ENSG00000132932|Q9NTI2-3|ATP8A2	nc|ENSG00000132932|Q9NTI2-3|ATP8A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.5958557128906	3	432.583451	1294.72852	0.060967	2.6373E-05	-0.028475	-1.2318E-05	0.032493	1.4056E-05	432.5834879934686	41.821	0.54942	41.911	41.807	42.357	0.090248					32	19	2	0	0	0	0.38765	1	9051	9051		12.856	4.1042	1	933320			55653	3678	31963	31964	67995	67995					0.09294805154081587
VVLAASPLRLC	11	Unmodified	_VVLAASPLRLC_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.3439331054688	2	571.341726	1140.6689	0.10196	5.8253E-05	2.9708	0.0016973	3.0727	0.0017556	571.3435105939847	18.36	0.42936	18.36	18.158	18.588	0					23	14	2	0	0	0	0.44828	1	1902	1902		4.897	0	1	38515			55654	741	31964	31965	67996	67996					0.10419210939062395
VVLAVPRIL	9	Unmodified	_VVLAVPRIL_					0	0	0			REV__ENSG00000162337|ENST00000294304|LRP5	REV__ENSG00000162337|ENST00000294304|LRP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7943115234375	2	490.33677	978.658987	0.33085	0.00016223	-0.1808	-8.8655E-05	0.15004	7.3572E-05	490.336704261688	81.247	0.43725	81.222	81.019	81.457	-0.02404					28	18	2	0	0	0	0.25938	1	21115	21115		4.3292	0	1	87074	+		55655	16971	31965	31966	67997	67997					0.16880390995981998
VVLEKAMHK	9	Oxidation (M)	_VVLEKAM(Oxidation (M))HK_		VVLEKAM(1)HK		VVLEKAM(53)HK	0	0	1		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.8051147460938	2	535.804977	1069.5954	0.16072	8.6114E-05	-0.059341	-3.1795E-05	0.10138	5.4319E-05	535.8048451010778	13.778	0.39536	13.778	13.597	13.992	0					31	13	3	0	0	0	0.048637	1	536	536		53.404	26.52	1	275740			55656	3655	31966	31967	67998	67998		464			0.06338662496568759
VVLEKAMHK	9	Oxidation (M)	_VVLEKAM(Oxidation (M))HK_					0	0	1		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	535.804977	1069.5954	-0.040218	-2.1549E-05	0.58627	0.00031413	0.54605	0.00029258	535.8051555438032	13.84	0.38973	13.736	13.513	13.903	-0.10466	-0.023358	0.00028879	NaN	53.404	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279820			55657	3655	31966	31967				464			0.06338662496568759
VVLEKAMHK	9	Oxidation (M)	_VVLEKAM(Oxidation (M))HK_					0	0	1		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	535.804977	1069.5954	0.10826	5.8007E-05	0.33472	0.00017934	0.44298	0.00023735	535.8049725419545	13.83	0.40176	13.764	13.575	13.977	-0.066068	0.0047983	1.9218E-05	NaN	53.404	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320110			55658	3655	31966	31967				464			0.06338662496568759
VVLGHSSL	8	Unmodified	_VVLGHSSL_					0	0	0		ENSG00000197933|ENST00000341191|ZNF823	ENSG00000197933|ENST00000341191|ZNF823	ENSG00000197933|ENST00000341191|ZNF823	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.58709716796875	2	406.237253	810.459953	-0.025728	-1.0451E-05	0.40504	0.00016454	0.37931	0.00015409	406.2373630863366	19.89	0.63498	19.774	19.433	20.068	-0.11592					31	21	2	0	0	0	0.34185	1	2299	2299		10.183	0.83596	1	22898			55659	8015	31967	31968	67999	67999					0.047141306972775965
VVLGQFLVLK	10	Unmodified	_VVLGQFLVLK_					0	0	0		ENST00000420029.1_1_1:174726080-174726215:-|nuORF;ENST00000524628.1_1_11:65770029-65771240:+|nuORF;ENSG00000175334|ENST00000312175|BANF1	ENST00000420029.1_1_1:174726080-174726215:-|nuORF	ENST00000420029.1_1_1:174726080-174726215:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.3630981445312	2	558.362985	1114.71142	0.36554	0.0002041	-0.13359	-7.4591E-05	0.23195	0.00012951	558.3628205517412	71.837	1.2004	71.837	71.55	72.75	0					95	43	4	0	0	0	1.5866E-05	3	18284	18240;18284;18335		147.06	75.137	1	2379600			55660	6859	31968	31969	68000;68001;68002	68001					0.1586492933890895
VVLGQFLVLK	10	Unmodified	_VVLGQFLVLK_					0	0	0		ENST00000420029.1_1_1:174726080-174726215:-|nuORF;ENST00000524628.1_1_11:65770029-65771240:+|nuORF;ENSG00000175334|ENST00000312175|BANF1	ENST00000420029.1_1_1:174726080-174726215:-|nuORF	ENST00000420029.1_1_1:174726080-174726215:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.3629760742188	2	558.362985	1114.71142	0.39859	0.00022256	-0.11145	-6.2229E-05	0.28715	0.00016033	558.3628147656896	71.785	1.1416	71.842	71.568	72.71	0.05658					101	41	5	0	0	0	0.001757	2	18273	18226;18273		110.67	64.975	1	2244300			55661	6859	31968	31969	68003;68004	68004					0.1586492933890895
VVLGQFLVLK	10	Unmodified	_VVLGQFLVLK_					0	0	0		ENST00000420029.1_1_1:174726080-174726215:-|nuORF;ENST00000524628.1_1_11:65770029-65771240:+|nuORF;ENSG00000175334|ENST00000312175|BANF1	ENST00000420029.1_1_1:174726080-174726215:-|nuORF	ENST00000420029.1_1_1:174726080-174726215:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.363037109375	2	558.362985	1114.71142	0.34655	0.0001935	-0.082591	-4.6116E-05	0.26396	0.00014738	558.3628588709846	71.893	1.0832	71.866	71.602	72.686	-0.027267					100	38	4	0	0	0	0.00089765	2	18295	18250;18295		122.18	68.346	1	2112200			55662	6859	31968	31969	68005;68006	68006					0.1586492933890895
VVLHLNKVI	9	Unmodified	_VVLHLNKVI_					0	0	0			REV__ENSG00000172689|ENST00000308287|MS4A10	REV__ENSG00000172689|ENST00000308287|MS4A10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2953491210938	2	517.839677	1033.6648	0.12654	6.5526E-05	0.33654	0.00017427	0.46308	0.0002398	517.8397300634037	40.788	0.26761	40.887	40.75	41.018	0.099407					12	9	2	0	0	0	0.19839	1	8719	8719		21.747	5.8995	1	121210	+		55663	17727	31969	31970	68007	68007					0.1493148950764862
VVLHLNKVI	9	Unmodified	_VVLHLNKVI_					0	0	0			REV__ENSG00000172689|ENST00000308287|MS4A10	REV__ENSG00000172689|ENST00000308287|MS4A10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	517.839677	1033.6648	0.22977	0.00011899	-0.28864	-0.00014947	-0.058862	-3.0481E-05	517.8393988485934	40.914	0.19251	40.914	40.847	41.039	0	0.013459	-0.00016317	NaN	15.847	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123790	+		55664	17727	31969	31970							0.1493148950764862
VVLHPRHY	8	Unmodified	_VVLHPRHY_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.83746337890625	2	510.790518	1019.56648	0.058028	2.964E-05	-0.5081	-0.00025953	-0.45007	-0.00022989	511.2921373288275	39.81	0.29729	39.81	39.644	39.942	0					14	10	2	0	0	0	0.34319	1	8404	8404		2.5775	0	1	60124			55665	6558	31970	31971	68008	68008					0.05748305982456259
VVLKGDAKK	9	Unmodified	_VVLKGDAKK_					0	0	0		ENSG00000133874|ENST00000256257|RNF122	ENSG00000133874|ENST00000256257|RNF122	ENSG00000133874|ENST00000256257|RNF122	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.308349609375	2	479.30821	956.601866	0.29783	0.00014275	-0.081451	-3.904E-05	0.21638	0.00010371	479.3080492161507	20.735	0.51386	20.735	20.594	21.108	0					34	17	3	0	0	0	0.23007	1	2648	2648		19.257	1.1106	1	126770			55666	3737	31971	31972	68009	68009					0.12182923719603878
VVLKKVREE	9	Unmodified	_VVLKKVREE_					0	0	0		ENST00000398632.3_1_21:42775383-42780157:+|nuORF;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2	ENST00000398632.3_1_21:42775383-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2	ENST00000398632.3_1_21:42775383-42780157:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.828125	2	550.345323	1098.67609	0.18215	0.00010025	-0.0020169	-1.11E-06	0.18013	9.9136E-05	550.3453471065585	12.244	0.26863	12.147	12	12.268	-0.096607					18	10	2	0	0	0	0.26262	1	33	33		0.45834	0	1	41760			55667	10167;7370	31972	31973	68010	68010					0.1307026681113257
VVLLNCLAHLT	11	Unmodified	_VVLLNCLAHLT_					0	0	0			REV__ENSG00000070367|ENST00000621441|EXOC5	REV__ENSG00000070367|ENST00000621441|EXOC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.7960205078125	2	598.347009	1194.67946	0.2549	0.00015252	4.3441	0.0025993	4.599	0.0027518	598.3490898220173	66.701	0.60317	66.687	66.485	67.089	-0.013588					33	21	2	0	0	0	0.32477	1	16683	16683		11.495	0.59575	1	163050	+		55668	13725	31973	31974	68011	68011					0.08991193593465141
VVLLNPWSI	9	Unmodified	_VVLLNPWSI_					0	0	0		nc|ENSG00000172954|Q6UWP7-2|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1	nc|ENSG00000172954|Q6UWP7-2|LCLAT1	nc|ENSG00000172954|Q6UWP7-2|LCLAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2916870117188	2	520.810585	1039.60662	0.67669	0.00035243	-1.1269	-0.00058691	-0.45022	-0.00023448	520.8100096051196	50.901	1.3664	50.948	50.162	51.528	0.046574					70	50	2	0	0	0	0.2322	1	11604	11604		20.454	2.3186	1	401520			55669	12838	31974	31975	68012	68012					0.08839807862364069
VVLLNPWSI	9	Unmodified	_VVLLNPWSI_					0	0	0		nc|ENSG00000172954|Q6UWP7-2|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1	nc|ENSG00000172954|Q6UWP7-2|LCLAT1	nc|ENSG00000172954|Q6UWP7-2|LCLAT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	520.810585	1039.60662	0.75782	0.00039468	-1.542	-0.0008031	-0.78419	-0.00040841	520.8096850329642	50.851	0.94159	50.851	50.489	51.43	0	-0.082971	-0.00021703	NaN	14.838	60	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319870			55670	12838	31974	31975							0.08839807862364069
VVLLNPWSI	9	Unmodified	_VVLLNPWSI_					0	0	0		nc|ENSG00000172954|Q6UWP7-2|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1	nc|ENSG00000172954|Q6UWP7-2|LCLAT1	nc|ENSG00000172954|Q6UWP7-2|LCLAT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	520.810585	1039.60662	0.75793	0.00039474	0.067023	3.4906E-05	0.82496	0.00042965	520.8109119224475	50.994	1.4256	51.004	50.002	51.428	0.0095634	0.069704	0.001459	NaN	14.838	84	53	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284190			55671	12838	31974	31975							0.08839807862364069
VVLLVTEM	8	Unmodified	_VVLLVTEM_					0	0	0			REV__ENSG00000180974|ENST00000641726|OR52E4	REV__ENSG00000180974|ENST00000641726|OR52E4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2538146972656	2	452.264622	902.514691	-0.12655	-5.7233E-05	-0.47947	-0.00021685	-0.60602	-0.00027408	452.2642668073086	14.645	0.31371	14.645	14.505	14.819	0					17	10	2	0	0	0	0.45851	1	832	832		2.8892	0	1	67337	+		55672	18127	31975	31976	68013	68013					0.05953381453673501
VVLNTVVYR	9	Unmodified	_VVLNTVVYR_					0	0	0		ENST00000417036.1_1_3:9405107-9405206:+|nuORF	ENST00000417036.1_1_3:9405107-9405206:+|nuORF	ENST00000417036.1_1_3:9405107-9405206:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2906494140625	2	531.818941	1061.62333	0.65644	0.00034911	-1.3461	-0.00071586	-0.68961	-0.00036675	531.8180500119491	44.467	0.45975	44.467	44.28	44.739	0					22	16	2	0	0	0	0.12329	1	9846	9846		41.956	20.209	1	254710			55673	10327	31976	31977	68014	68014					0.09498308748334239
VVLNTVVYR	9	Unmodified	_VVLNTVVYR_					0	0	0		ENST00000417036.1_1_3:9405107-9405206:+|nuORF	ENST00000417036.1_1_3:9405107-9405206:+|nuORF	ENST00000417036.1_1_3:9405107-9405206:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2905883789062	2	531.818941	1061.62333	0.54421	0.00028942	-1.0689	-0.00056848	-0.52471	-0.00027905	531.8181385507999	44.4	0.43776	44.468	44.274	44.711	0.068573					34	15	3	0	0	0	0.24289	1	9792	9792		18.146	7.3224	1	286710			55674	10327	31976	31977	68015	68015					0.09498308748334239
VVLNTVVYR	9	Unmodified	_VVLNTVVYR_					0	0	0		ENST00000417036.1_1_3:9405107-9405206:+|nuORF	ENST00000417036.1_1_3:9405107-9405206:+|nuORF	ENST00000417036.1_1_3:9405107-9405206:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.290771484375	2	531.818941	1061.62333	0.53107	0.00028243	-1.1922	-0.00063404	-0.66114	-0.00035161	531.8182536913449	44.358	0.44264	44.433	44.2	44.643	0.075047					40	15	4	0	0	0	0.18123	1	9784	9784		34.402	10.381	1	277400			55675	10327	31976	31977	68016	68016					0.09498308748334239
VVLPAVRLPI	10	Unmodified	_VVLPAVRLPI_					0	0	0		ENST00000435504.8_1_2:25994354-26022267:-|nuORF	ENST00000435504.8_1_2:25994354-26022267:-|nuORF	ENST00000435504.8_1_2:25994354-26022267:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8617553710938	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.68	1	113.69	113.19	114.19	0.014824								0	0	0	0.37664	1	29575	29575		3.5965	0	1				55676	10508	31977	31978	68017	68017					0.17692349058779655
VVLPAVRLPI	10	Unmodified	_VVLPAVRLPI_					0	0	0		ENST00000435504.8_1_2:25994354-26022267:-|nuORF	ENST00000435504.8_1_2:25994354-26022267:-|nuORF	ENST00000435504.8_1_2:25994354-26022267:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.796142578125	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.98	1	115	114.5	115.5	0.018738								0	0	0	0.37664	1	29888	29888		3.5965	0	1				55677	10508	31977	31978	68018	68018					0.17692349058779655
VVLPYLVPK	9	Unmodified	_VVLPYLVPK_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.808349609375	2	514.331153	1026.64775	0.1673	8.6048E-05	-0.034653	-1.7823E-05	0.13265	6.8225E-05	514.3309931967437	60.35	0.69392	60.35	60.098	60.792	0					43	25	3	0	0	0	0.14099	1	14763	14763		42.095	23.96	1	875570			55678	1349	31978	31979	68019	68019					0.13549568901839848
VVLPYLVPK	9	Unmodified	_VVLPYLVPK_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8080444335938	2	514.331153	1026.64775	-0.17106	-8.7981E-05	0.25449	0.00013089	0.083429	4.291E-05	514.3311412543554	60.191	0.81955	60.286	60.047	60.866	0.095093					60	29	3	0	0	0	0.1659	1	14671	14671		36.044	12.896	1	925990			55679	1349	31978	31979	68020	68020					0.13549568901839848
VVLPYLVPK	9	Unmodified	_VVLPYLVPK_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8082275390625	2	514.331153	1026.64775	0.11283	5.8034E-05	0.012545	6.4525E-06	0.12538	6.4487E-05	514.3309330336049	60.261	0.78341	60.25	60.026	60.81	-0.011486					53	28	3	0	0	0	0.1659	1	14704	14704		36.044	30.814	1	907330			55680	1349	31978	31979	68021	68021					0.13549568901839848
VVLQELFFK	9	Unmodified	_VVLQELFFK_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2669067382812	2	561.831517	1121.64848	0.32157	0.00018067	0.30109	0.00016916	0.62266	0.00034983	561.8315891410145	70.563	0.44454	70.539	70.329	70.773	-0.024872					27	15	3	0	0	0	0.21538	1	17862	17862		20.415	7.883	1	163840			55681	5727	31979	31980	68022	68022					0.09252363550876908
VVLQKGFI	8	Unmodified	_VVLQKGFI_					0	0	0			REV__ENST00000467061.1_1_3:185212881-185213145:-|nuORF	REV__ENST00000467061.1_1_3:185212881-185213145:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.2778625488281	2	452.286746	902.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.796	1	70.857	70.357	71.357	0.060783								0	0	0	0.35779	1	17955	17955		11.114	0	1		+		55682	17101	31980	31981	68023	68023					0.10376153662184606
VVLQTATV	8	Unmodified	_VVLQTATV_					0	0	0		ENST00000398145.6_2_22:26877999-26878053:-|nuORF	ENST00000398145.6_2_22:26877999-26878053:-|nuORF	ENST00000398145.6_2_22:26877999-26878053:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.2430114746094	2	415.752736	829.490919	0.18933	7.8715E-05	0.03543	1.473E-05	0.22476	9.3446E-05	415.7526747312464	32.818	0.71569	32.873	32.63	33.345	0.054371					55	25	3	0	0	0	0.43302	1	6410	6410		11.64	0.81637	1	929990			55683	10157	31981	31982	68024	68024					0.06935284011512977
VVLRHFRHNL	10	Unmodified	_VVLRHFRHNL_					0	0	0			REV__ENST00000265748.6_2_7:36429459-36435956:+|nuORF	REV__ENST00000265748.6_2_7:36429459-36435956:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.8877258300781	3	430.922912	1289.74691	-0.26874	-0.00011581	-3.6659	-0.0015797	-3.9347	-0.0016955	430.91974013192856	15.06	2.4619	14.95	14.18	16.642	-0.10981					152	85	5	0	0	0	0.31942	1	930	930		6.1918	0	1	270220	+		55684	19654	31982	31983	68025	68025					0.11362404639316992
VVLRLAATAAT	11	Unmodified	_VVLRLAATAAT_					0	0	0		ENST00000585306.5_1_17:38209858-38217407:-|nuORF	ENST00000585306.5_1_17:38209858-38217407:-|nuORF	ENST00000585306.5_1_17:38209858-38217407:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.826171875	2	543.337498	1084.66044	0.11632	6.3199E-05	-0.34112	-0.00018534	-0.2248	-0.00012214	543.3374006299973	12.096	0.10038	12.096	12.018	12.119	0					6	4	2	0	0	0	0.33352	1	5	5		0	0	1	15718			55685	12102	31983	31984	68026	68026					0.12149980294043417
VVLRLAATAAT	11	Unmodified	_VVLRLAATAAT_					0	0	0		ENST00000585306.5_1_17:38209858-38217407:-|nuORF	ENST00000585306.5_1_17:38209858-38217407:-|nuORF	ENST00000585306.5_1_17:38209858-38217407:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.337498	1084.66044	0.14312	7.7762E-05	0.079536	4.3215E-05	0.22266	0.00012098	543.3374839272931	12.22	0.15796	12.152	12.068	12.226	-0.06806	0.03344	0.00025698	NaN	0	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74966			55686	12102	31983	31984							0.12149980294043417
VVLRYKEQ	8	Unmodified	_VVLRYKEQ_					0	0	0			REV__ENSG00000133818|ENST00000256196|RRAS2	REV__ENSG00000133818|ENST00000256196|RRAS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.81591796875	2	517.803291	1033.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.749	1	48.749	48.249	49.249	0								0	0	0	0.35014	1	11179	11179		14.582	1.0738	1		+		55687	15638	31984	31985	68027	68027					0.07657735714224145
VVLSTSPK	8	Unmodified	_VVLSTSPK_					0	0	0		ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	ENSG00000055483|ENST00000449938|USP36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.2242736816406	2	415.752736	829.490919	0.26579	0.0001105	-0.081801	-3.4009E-05	0.18399	7.6493E-05	415.7526252622257	32.814	0.63862	32.87	32.645	33.284	0.055309					52	22	4	0	0	0	0.31934	1	6361	6361		18.135	4.6271	1	895980			55688	705	31985	31986	68028	68028					0.06935284011512977
VVLYNLGTR	9	Unmodified	_VVLYNLGTR_					0	0	0			REV__ENST00000265070.6_1_5:32126721-32135734:-|nuORF	REV__ENST00000265070.6_1_5:32126721-32135734:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8158569335938	2	517.803291	1033.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.553	1	48.599	48.099	49.099	0.046227								0	0	0	0.21357	1	11118	11118		18.135	2.2878	1		+		55689	19645	31986	31987	68029	68029					0.07657735714224145
VVLYPLVAK	9	Unmodified	_VVLYPLVAK_					0	0	0		ENSG00000110711|ENST00000279146|AIP	ENSG00000110711|ENST00000279146|AIP	ENSG00000110711|ENST00000279146|AIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3053283691406	2	501.323328	1000.6321	0.63956	0.00032063	-1.6107	-0.0008075	-0.97117	-0.00048687	501.32228976883556	54.399	0.59665	54.399	54.214	54.811	0					49	21	3	0	0	0	0.1669	3	12943	12890;12943;12993		28.487	10.352	1	917270			55690	2324	31987	31988	68030;68031;68032	68031					0.13181282384789483
VVLYPLVAK	9	Unmodified	_VVLYPLVAK_					0	0	0		ENSG00000110711|ENST00000279146|AIP	ENSG00000110711|ENST00000279146|AIP	ENSG00000110711|ENST00000279146|AIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.3052978515625	2	501.323328	1000.6321	0.60736	0.00030448	-1.7955	-0.00090013	-1.1882	-0.00059565	501.3221952008863	54.371	0.58786	54.434	54.246	54.834	0.063206					49	21	3	0	0	0	0.1669	2	12906	12906;12957		28.487	10.352	1	1027400			55691	2324	31987	31988	68033;68034	68033					0.13181282384789483
VVLYPLVAK	9	Unmodified	_VVLYPLVAK_					0	0	0		ENSG00000110711|ENST00000279146|AIP	ENSG00000110711|ENST00000279146|AIP	ENSG00000110711|ENST00000279146|AIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.30535888671875	2	501.323328	1000.6321	0.54857	0.00027501	-2.0158	-0.0010106	-1.4672	-0.00073555	501.3222042519078	54.411	0.62603	54.395	54.17	54.796	-0.015923					48	21	3	0	0	0	0.1669	2	12893	12893;12953		28.487	3.813	1	967080			55692	2324	31987	31988	68035;68036	68035					0.13181282384789483
VVMENVGQQK	10	Oxidation (M)	_VVM(Oxidation (M))ENVGQQK_		VVM(1)ENVGQQK		VVM(78)ENVGQQK	0	0	1		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.292724609375	2	574.29243	1146.57031	0.15555	8.9332E-05	0.048303	2.774E-05	0.20385	0.00011707	574.2924551470672	17.717	0.64822	17.717	17.452	18.1	0					52	21	4	0	0	0	0.014191	1	1750	1750		78.06	53.07	1	148830			55693	312	31988	31989	68037	68037		26			0.0028856290334715595
VVMENVGQQK	10	Oxidation (M)	_VVM(Oxidation (M))ENVGQQK_		VVM(1)ENVGQQK		VVM(77)ENVGQQK	0	0	1		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2923583984375	2	574.29243	1146.57031	0.15787	9.0661E-05	0.18577	0.00010669	0.34364	0.00019735	574.2924605287484	17.943	0.69708	17.826	17.545	18.242	-0.11739					46	23	3	0	0	0	0.015119	2	1766	1766;1814		77.049	55.458	1	200020			55694	312	31988	31989	68038;68039	68038		26			0.0028856290334715595
VVMENVGQQK	10	Oxidation (M)	_VVM(Oxidation (M))ENVGQQK_		VVM(1)ENVGQQK		VVM(79)ENVGQQK	0	0	1		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.29248046875	2	574.29243	1146.57031	0.071374	4.0989E-05	0.44435	0.00025519	0.51573	0.00029618	574.2925676118758	17.959	0.72264	17.899	17.56	18.283	-0.060429					54	25	3	0	0	0	0.012937	1	1787	1787		79.427	53.159	1	180140			55695	312	31988	31989	68040	68040		26			0.0028856290334715595
VVMGHELTHAF	11	Unmodified	_VVMGHELTHAF_					0	0	0		ENST00000490579.1_1_3:183995094-184008674:+|nuORF;ENST00000488401.5_1_3:183993962-184009147:+|nuORF;nc|ENSG00000145194|P0DPD6-3|ECE2;ENSG00000145194|ENST00000404464|ECE2;nc|ENSG00000145194|P0DPD6|ECE2;nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2	ENST00000490579.1_1_3:183995094-184008674:+|nuORF	ENST00000490579.1_1_3:183995094-184008674:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.2093811035156	3	414.209619	1239.60703	-0.19403	-8.0371E-05	0.34348	0.00014227	0.14944	6.1901E-05	414.2104739337982	25.799	2.7397	25.799	25.413	28.153	0					347	95	6	0	0	0	0.40884	1	4587	4587		5.0475	0	1	37678000			55696	4635	31989	31990	68041	68041					-0.003191404800872988
VVMLLEVV	8	Unmodified	_VVMLLEVV_					0	0	0			REV__nc|ENSG00000102893|Q93100-4|PHKB	REV__nc|ENSG00000102893|Q93100-4|PHKB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.76348876953125	2	451.274989	900.535426	0.21179	9.5574E-05	-0.31765	-0.00014335	-0.10586	-4.7774E-05	451.27472433554397	70.999	0.79803	70.999	70.633	71.431	0					49	28	2	0	0	0	0.34046	1	17933	17933		14.582	0	1	931970	+		55697	14339	31990	31991	68042	68042					0.08117971833348747
VVMRDPASK	9	Oxidation (M)	_VVM(Oxidation (M))RDPASK_		VVM(1)RDPASK		VVM(59)RDPASK	0	0	1		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7707824707031	2	509.771134	1017.52771	-0.025102	-1.2796E-05	-0.51065	-0.00026031	-0.53575	-0.00027311	509.77092620540793	12.877	0.95981	12.877	12.468	13.427	0					122	33	6	0	0	0	0.032589	1	260	260		59.368	30.287	1	1059400			55698	3053	31991	31992	68043	68043		382			0.01965212565778529
VVMRDPASK	9	Oxidation (M)	_VVM(Oxidation (M))RDPASK_		VVM(1)RDPASK		VVM(59)RDPASK	0	0	1		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.7708740234375	2	509.771134	1017.52771	-0.04613	-2.3516E-05	-0.40986	-0.00020894	-0.45599	-0.00023245	509.77100263336763	12.948	0.98243	12.849	12.407	13.389	-0.09929					122	33	6	0	0	0	0.032589	1	274	274		59.368	34.377	1	958820			55699	3053	31991	31992	68044	68044		382			0.01965212565778529
VVMRDPASK	9	Oxidation (M)	_VVM(Oxidation (M))RDPASK_		VVM(1)RDPASK		VVM(59)RDPASK	0	0	1		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.7710266113281	2	509.771134	1017.52771	-0.15934	-8.1227E-05	-0.36434	-0.00018573	-0.52368	-0.00026696	509.7709871123374	12.918	0.92455	12.85	12.491	13.416	-0.067495					113	31	6	0	0	0	0.032589	1	281	281		59.368	30.287	1	1026600			55700	3053	31991	31992	68045	68045		382			0.01965212565778529
VVMRDPQTK	9	Oxidation (M)	_VVM(Oxidation (M))RDPQTK_		VVM(1)RDPQTK		VVM(40)RDPQTK	0	0	1		ENST00000437410.2_1_1:54441353-54441674:-|nuORF;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3	ENST00000437410.2_1_1:54441353-54441674:-|nuORF	ENST00000437410.2_1_1:54441353-54441674:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2899780273438	2	545.289691	1088.56483	0.29232	0.0001594	-0.23844	-0.00013002	0.053875	2.9377E-05	545.2897463014257	12.729	0.66204	12.63	12.407	13.069	-0.099291					65	22	4	0	0	0	0.086462	1	205	205		40.239	21.866	1	734010			55701	6425	31992	31993	68046	68046		751			0.024088841115144533
VVMTPVPLFSK	11	Oxidation (M)	_VVM(Oxidation (M))TPVPLFSK_		VVM(1)TPVPLFSK		VVM(140)TPVPLFSK	0	0	1		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	617.3489990234375	2	617.349217	1232.68388	0.42613	0.00026307	-0.64044	-0.00039538	-0.21431	-0.0001323	617.3488795619435	56.509	0.90422	56.509	56.212	57.116	0					93	33	4	0	0	0	1.3231E-08	3	13586	13531;13586;13635		139.38	108.74	1	2673300			55702	7088	31993	31994	68047;68048;68049	68048		793			0.07684658016364665
VVMTPVPLFSK	11	Oxidation (M)	_VVM(Oxidation (M))TPVPLFSK_		VVM(1)TPVPLFSK		VVM(130)TPVPLFSK	0	0	1		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	617.3492431640625	2	617.349217	1232.68388	0.49866	0.00030785	-0.6038	-0.00037276	-0.10514	-6.4909E-05	617.3488704928229	56.474	0.8504	56.553	56.247	57.097	0.078671					89	31	4	0	0	0	9.0647E-06	3	13561	13513;13561;13614		125.18	87.573	1	3138000			55703	7088	31993	31994	68050;68051;68052	68051		793			0.07684658016364665
VVMTPVPLFSK	11	Oxidation (M)	_VVM(Oxidation (M))TPVPLFSK_		VVM(1)TPVPLFSK		VVM(120)TPVPLFSK	0	0	1		nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK	nc|ENSG00000178950|O14976-2|GAK	nc|ENSG00000178950|O14976-2|GAK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	617.3504028320312	2	617.349217	1232.68388	0.88743	0.00054785	-0.7953	-0.00049098	0.092128	5.6875E-05	617.3489286912212	56.495	0.8244	56.476	56.239	57.063	-0.019081					80	29	4	0	0	0	1.6471E-05	3	13539	13539;13593;13645		118.21	72.47	1	2668400			55704	7088	31993	31994	68053;68054;68055	68053		793			0.07684658016364665
VVNAKEKFLKE	11	Unmodified	_VVNAKEKFLKE_					0	0	0		ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	435.590576171875	3	435.590605	1303.74999	-0.0055393	-2.4129E-06	-0.58183	-0.00025344	-0.58737	-0.00025585	435.5904291946811	39.302	0.49166	39.401	39.184	39.676	0.099403					31	17	2	0	0	0	0.39244	1	8298	8298		12.228	1.7001	1	507250			55705	8426	31994	31995	68056	68056					0.11026190182769824
VVNAKEKFLKE	11	Unmodified	_VVNAKEKFLKE_					0	0	0		ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	435.590605	1303.74999	-0.40276	-0.00017544	-0.016166	-7.0416E-06	-0.41893	-0.00018248	435.9248988078225	39.525	0.61845	39.525	39.268	39.886	0	0.061883	0.00022324	NaN	12.228	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347640			55706	8426	31994	31995							0.11026190182769824
VVNGKVEYFLK	11	Unmodified	_VVNGKVEYFLK_					0	0	0		ENSG00000122565|ENST00000396386|CBX3;ENST00000325243.6_1_11:27828081-27828540:+|nuORF	ENSG00000122565|ENST00000396386|CBX3	ENSG00000122565|ENST00000396386|CBX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.5959167480469	3	432.583451	1294.72852	0.060967	2.6373E-05	-0.028475	-1.2318E-05	0.032493	1.4056E-05	432.5834879934686	41.821	0.54942	41.911	41.807	42.357	0.090248					32	19	2	0	0	0	0.39698	1	9096	9096		11.631	4.1543	1	933320			55707	3052	31995	31996	68057	68057					0.0929480515405885
VVNGKVEYFLK	11	Unmodified	_VVNGKVEYFLK_					0	0	0		ENSG00000122565|ENST00000396386|CBX3;ENST00000325243.6_1_11:27828081-27828540:+|nuORF	ENSG00000122565|ENST00000396386|CBX3	ENSG00000122565|ENST00000396386|CBX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5959777832031	3	432.583451	1294.72852	0.21004	9.0858E-05	0.28672	0.00012403	0.49676	0.00021489	432.58352126044105	41.737	0.48715	41.834	41.748	42.235	0.096622					27	17	2	0	0	0	0.42246	1	9047	9047		8.2864	0.80937	1	886620			55708	3052	31995	31996	68058	68058					0.0929480515405885
VVNIRASQPRR	11	Unmodified	_VVNIRASQPRR_					0	0	0			REV__ENST00000269601.9_1_18:77733562-77733688:-|nuORF	REV__ENST00000269601.9_1_18:77733562-77733688:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.8769226074219	3	432.593343	1294.7582	0.051268	2.2178E-05	2.8936	0.0012517	2.9448	0.0012739	432.92897525949	33.582	0.55039	33.582	33.365	33.916	0					30	19	2	0	0	0	0.33287	1	6606	6606		0.45452	0	1	76509	+		55709	19672	31996	31997	68059	68059					0.12261181942790245
VVNIVPVIAK	10	Unmodified	_VVNIVPVIAK_					0	0	0		nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3054809570312	2	526.347335	1050.68012	0.76257	0.00040138	-0.31498	-0.00016579	0.44759	0.00023559	526.3470857225884	54.224	0.37447	54.224	53.999	54.374	0					24	13	2	0	0	0	0.31039	1	12882	12882		18.146	12.414	1	254430			55710	7467	31997	31998	68060	68060					0.15680356304824272
VVNIVPVIAK	10	Unmodified	_VVNIVPVIAK_					0	0	0		nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.3055419921875	2	526.347335	1050.68012	0.62148	0.00032711	-0.12725	-6.6978E-05	0.49423	0.00026014	526.3472649678847	54.174	0.31966	54.237	54.063	54.382	0.063202					20	11	2	0	0	0	0.31039	1	12865	12865		18.146	11.941	1	204660			55711	7467	31997	31998	68061	68061					0.15680356304824272
VVNIVPVIAK	10	Unmodified	_VVNIVPVIAK_					0	0	0		nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	nc|ENSG00000184640|Q9UHD8-4|SEPTIN9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	526.347335	1050.68012	0.66876	0.000352	0.38947	0.000205	1.0582	0.00055699	526.3474672801385	54.184	0.44952	54.168	54.002	54.451	-0.015923	-0.042034	0.00051088	NaN	13.042	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221030			55712	7467	31997	31998							0.15680356304824272
VVNKCICHV	9	Unmodified	_VVNKCICHV_					0	0	0			REV__ENSG00000130943|ENST00000253255|PKDREJ	REV__ENSG00000130943|ENST00000253255|PKDREJ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.7735900878906	2	507.764797	1013.51504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.075	1	24.002	23.502	24.502	-0.072559								0	0	0	0.23367	1	3643	3643		11.64	0	1		+		55713	15490	31998	31999	68062	68062					0.008824779018937079
VVNKNGRLEY	10	Unmodified	_VVNKNGRLEY_					0	0	0			REV__CON__Q28085	REV__CON__Q28085	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.3424072265625	2	596.327662	1190.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.765	1	66.765	66.265	67.265	0								0	0	0	0.34755	1	16729	16729		15.847	3.6065	1		+	+	55714	13262	31999	32000	68063	68063					0.05307604283348155
VVNKTIFAK	9	Unmodified	_VVNKTIFAK_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;nc|ENSG00000197170|O00232-2|PSMD12;ENST00000490962.1_1_3:72925982-72926321:-|nuORF	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.3042297363281	2	510.316035	1018.61752	0.29368	0.00014987	-0.60683	-0.00030968	-0.31316	-0.00015981	510.3157201176622	24.879	0.45272	24.879	24.639	25.091	0					25	15	2	0	0	0	0.24993	1	3884	3884		13.042	3.695	1	84558			55715	7939	32000	32001	68064	68064					0.10895210236674302
VVNKTIFAK	9	Unmodified	_VVNKTIFAK_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;nc|ENSG00000197170|O00232-2|PSMD12;ENST00000490962.1_1_3:72925982-72926321:-|nuORF	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.3033142089844	2	510.316035	1018.61752	0.16077	8.2044E-05	-0.26033	-0.00013285	-0.099556	-5.0805E-05	510.31585933329546	24.905	0.47414	24.849	24.628	25.102	-0.055931					25	16	2	0	0	0	0.2719	1	3916	3916		13.042	5.1323	1	64555			55716	7939	32000	32001	68065	68065					0.10895210236674302
VVNKTIFAK	9	Unmodified	_VVNKTIFAK_					0	0	0		ENSG00000197170|ENST00000356126|PSMD12;nc|ENSG00000197170|O00232-2|PSMD12;ENST00000490962.1_1_3:72925982-72926321:-|nuORF	ENSG00000197170|ENST00000356126|PSMD12	ENSG00000197170|ENST00000356126|PSMD12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.3036193847656	2	510.316035	1018.61752	-0.069727	-3.5583E-05	-0.35935	-0.00018338	-0.42907	-0.00021896	510.3156919529156	24.882	0.50087	24.851	24.571	25.072	-0.031408					24	16	2	0	0	0	0.27726	1	3908	3908		12.241	2.1667	1	78337			55717	7939	32000	32001	68066	68066					0.10895210236674302
VVNKVPLTGK	10	Unmodified	_VVNKVPLTGK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.8346557617188	2	527.834591	1053.65463	0.36009	0.00019007	-0.19046	-0.00010053	0.16963	8.9538E-05	527.8344677203701	23.73	0.80152	23.73	23.419	24.22	0					69	27	4	0	0	0	0.01159	1	3546	3546		80.896	33.301	1	326710			55718	4938	32001	32002	68067	68067					0.12994881782424272
VVNKVPLTGK	10	Unmodified	_VVNKVPLTGK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.834716796875	2	527.834591	1053.65463	0.35982	0.00018993	-0.16154	-8.5269E-05	0.19828	0.00010466	527.8344589894873	23.854	0.8789	23.781	23.448	24.327	-0.072559					64	29	4	0	0	0	0.0044422	1	3578	3578		94.909	47.314	1	384520			55719	4938	32001	32002	68068	68068					0.12994881782424272
VVNKVPLTGK	10	Unmodified	_VVNKVPLTGK_					0	0	0		ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	ENSG00000151135|ENST00000280756|TMEM263	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.8347778320312	2	527.834591	1053.65463	0.57688	0.0003045	-0.41028	-0.00021656	0.1666	8.7937E-05	527.8343652545117	23.879	0.74603	23.84	23.45	24.196	-0.038927					68	25	4	0	0	0	0.0037867	1	3572	3572		98.73	51.136	1	385470			55720	4938	32001	32002	68069	68069					0.12994881782424272
VVNPEALKI	9	Unmodified	_VVNPEALKI_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2845458984375	2	491.800217	981.585882	0.17815	8.7615E-05	-0.089343	-4.3939E-05	0.088808	4.3676E-05	491.80032401529195	49.213	0.34242	49.245	48.983	49.326	0.032043					21	11	2	0	0	0	0.24471	1	11250	11250		8.1555	4.8742	1	244500			55721	5595	32002	32003	68070	68070					0.09435217482700864
VVNPLTVEDI	10	Unmodified	_VVNPLTVEDI_					0	0	0			REV__ENSG00000171806|ENST00000310392|METTL18	REV__ENSG00000171806|ENST00000310392|METTL18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3231811523438	2	549.805697	1097.59684	0.50713	0.00027883	-0.88964	-0.00048913	-0.38251	-0.00021031	549.805401232005	35.522	0.56998	35.605	35.384	35.954	0.082355					35	20	2	0	0	0	0.31267	1	7077	7077		14.838	4.0143	1	621280	+		55722	17665	32003	32004	68071	68071					0.05194575066343532
VVNPLTVEDI	10	Unmodified	_VVNPLTVEDI_					0	0	0			REV__ENSG00000171806|ENST00000310392|METTL18	REV__ENSG00000171806|ENST00000310392|METTL18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3231811523438	2	549.805697	1097.59684	0.11146	6.1282E-05	2.1419	0.0011776	2.2533	0.0012389	549.80697068871	35.509	0.3637	35.595	35.399	35.762	0.086246					28	12	3	0	0	0	0.3156	1	7066	7066		6.7232	0	1	435250	+		55723	17665	32003	32004	68072	68072					0.05194575066343532
VVNSIQVL	8	Unmodified	_VVNSIQVL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.5903625488281	2	436.26601	870.517468	-0.11328	-4.9419E-05	-0.059836	-2.6104E-05	-0.17311	-7.5523E-05	436.2658879595589	39.408	0.69028	39.501	39.226	39.917	0.09267					39	24	2	0	0	0	0.3366	1	8319	8319		18.135	2.2878	1	178670			55724	3239	32004	32005	68073	68073					0.07702972902859528
VVNSPHRQYK	10	Unmodified	_VVNSPHRQYK_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.89111328125	3	409.891278	1226.652	-0.39607	-0.00016235	-0.42211	-0.00017302	-0.81818	-0.00033536	409.8912021913927	13.111	0.54906	13.111	12.847	13.396	0					63	19	5	0	0	0	0.31899	1	344	344		7.4771	2.0744	1	280450			55725	5902	32005	32006	68074	68074					0.0477442637745753
VVNSPHRQYK	10	Unmodified	_VVNSPHRQYK_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.8912048339844	3	409.891278	1226.652	-0.23372	-9.5801E-05	-0.53247	-0.00021826	-0.7662	-0.00031406	409.89113697150066	13.209	0.68711	13.11	12.729	13.416	-0.09929					61	23	4	0	0	0	0.36279	1	372	372		10.315	2.0288	1	286390			55726	5902	32005	32006	68075	68075					0.0477442637745753
VVNYSSINRLM	11	Unmodified	_VVNYSSINRLM_					0	0	0		nc|ENSG00000131355|Q9BY15-2|ADGRE3;ENSG00000131355|ENST00000253673|ADGRE3	nc|ENSG00000131355|Q9BY15-2|ADGRE3	nc|ENSG00000131355|Q9BY15-2|ADGRE3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5960388183594	3	432.564062	1294.67036	0.11828	5.1164E-05	3.7232	0.0016105	3.8415	0.0016617	432.8991234885708	41.978	0.14326	42.072	42.009	42.153	0.09343					5	4	2	0	0	0	0.33122	1	9097	9097		7.0371	5.582	1	121590			55727	3554	32006	32007	68076	68076					0.03480800237139192
VVPCPTKVI	9	Unmodified	_VVPCPTKVI_					0	0	0			REV__nc|ENSG00000152092|O14525-3|ASTN1	REV__nc|ENSG00000152092|O14525-3|ASTN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2835388183594	2	478.285889	954.557224	0.20379	9.7468E-05	-3.0179	-0.0014434	-2.8141	-0.0013459	478.28450407609034	68.491	0.48204	68.491	68.226	68.708	0					27	17	2	0	0	0	0.19747	1	17261	17261		24.021	5.8856	1	313540	+		55728	16565	32007	32008	68077	68077					0.07812776581920389
VVPCPTKVI	9	Unmodified	_VVPCPTKVI_					0	0	0			REV__nc|ENSG00000152092|O14525-3|ASTN1	REV__nc|ENSG00000152092|O14525-3|ASTN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	478.285889	954.557224	0.16689	7.982E-05	-3.3998	-0.0016261	-3.2329	-0.0015463	478.2843524374214	68.36	0.48888	68.432	68.24	68.729	0.071938	-0.032902	-0.00016342	NaN	24.021	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325730	+		55729	16565	32007	32008							0.07812776581920389
VVPDAIVL	8	Unmodified	_VVPDAIVL_					0	0	0		ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.25762939453125	2	413.257654	824.500755	-0.035438	-1.4645E-05	0.074614	3.0835E-05	0.039176	1.619E-05	413.2575869817443	66.845	1.1875	66.845	66.545	67.732	0					116	41	4	0	0	0	0.20019	1	16847	16847		42.968	0	1	4634100			55730	8670	32008	32009	68078	68078					0.08148472016898722
VVPDAIVL	8	Unmodified	_VVPDAIVL_					0	0	0		ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.2380676269531	2	413.257654	824.500755	-0.026489	-1.0947E-05	-2.2745	-0.00093997	-2.301	-0.00095092	413.2573589561162	67.809	0.13567	67.809	67.706	67.842	0					6	4	2	0	0	0	0.34247	1	17043	17043		8.5933	0	1	64523			55731	8670	32008	32009	68079	68079					0.08148472016898722
VVPDAIVL	8	Unmodified	_VVPDAIVL_					0	0	0		ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.2576904296875	2	413.257654	824.500755	0.24297	0.00010041	-0.2497	-0.00010319	-0.0067288	-2.7807E-06	413.2574679311337	66.805	1.5119	66.889	66.494	68.006	0.083824					121	53	4	0	0	0	0.20019	1	16822	16822		42.968	0	1	5234900			55732	8670	32008	32009	68080	68080					0.08148472016898722
VVPGSLIDHP	10	Unmodified	_VVPGSLIDHP_					0	0	0		ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	ENST00000479868.6_1_3:10342947-10354476:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.8157958984375	2	517.287474	1032.5604	0.070378	3.6406E-05	2.7096	0.0014016	2.7799	0.001438	517.2888396233595	28.807	0.36692	28.808	28.58	28.946	0.00046921					20	12	2	0	0	0	0.30079	1	5108	5108		14.838	0	1	97750			55733	5275	32009	32010	68081	68081					0.04541742960282136
VVPIGLYS	8	Unmodified	_VVPIGLYS_					0	0	0			REV__ENSG00000136002|ENST00000409359|ARHGEF4	REV__ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.2492370605469	2	424.249829	846.485105	0.019062	8.087E-06	-0.78806	-0.00033433	-0.76899	-0.00032625	424.24936387571694	96.148	0.59372	96.144	95.884	96.478	-0.0038223					111	57	2	0	0	0	0.45015	1	25709	25709		5.7604	0	1	544800	+		55734	15777	32010	32011	68082	68082					0.05572185499852367
VVPLPSCP	8	Unmodified	_VVPLPSCP_					0	0	0		ENST00000589246.1_1_17:75493182-75494737:+|nuORF	ENST00000589246.1_1_17:75493182-75494737:+|nuORF	ENST00000589246.1_1_17:75493182-75494737:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.58709716796875	2	406.222757	810.430961	0.090713	3.685E-05	3.9711	0.0016132	4.0618	0.00165	406.22439829958694	19.853	0.27845	19.797	19.652	19.93	-0.055691					14	9	3	0	0	0	0.34185	1	2327	2327		10.183	4.423	1	18454			55735	12159	32011	32012	68083	68083					0.01816270076631099
VVPLRPPHR	9	Unmodified	_VVPLRPPHR_					0	0	0		ENST00000485807.1_1_1:227921606-227921849:-|nuORF	ENST00000485807.1_1_1:227921606-227921849:-|nuORF	ENST00000485807.1_1_1:227921606-227921849:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2828369140625	2	535.832717	1069.65088	0.17619	9.4406E-05	0.60668	0.00032508	0.78286	0.00041948	536.3346964094645	27.247	0.90694	27.226	26.839	27.746	-0.021412					72	31	4	0	0	0	0.25622	1	4710	4710		3.9444	0	1	308630			55736	11097	32012	32013	68084	68084					0.11884256799226023
VVPMLWWA	8	Unmodified	_VVPMLWWA_					0	0	0			REV__ENST00000414287.5_1_22:49808404-49808650:-|nuORF	REV__ENST00000414287.5_1_22:49808404-49808650:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.3039245605469	2	501.267499	1000.52044	0.38609	0.00019353	-1.6491	-0.00082665	-1.263	-0.00063311	501.266741337522	19.502	0.67019	19.446	19.283	19.953	-0.055693					33	23	2	0	0	0	0.34297	1	2346	2346		6.3541	0.59368	1	49392	+		55737	20799	32013	32014	68085	68085					0.020205247560170392
VVPPAPCM	8	Unmodified	_VVPPAPCM_					0	0	0			REV__ENST00000354883.10_1_3:66428817-66428886:+|nuORF	REV__ENST00000354883.10_1_3:66428817-66428886:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.1953125	2	407.20351	812.392467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.414	1	20.361	19.861	20.861	-0.05291								0	0	0	0.37992	1	2529	2529		0.79363	0	1		+		55738	20179	32014	32015	68086	68086					-0.021233588295331174
VVPPFLQPEV	10	Unmodified	_VVPPFLQPEV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8212280273438	2	562.82115	1123.62775	0.27722	0.00015603	0.092163	5.1871E-05	0.36938	0.0002079	562.821150150616	76.591	0.56154	76.591	76.396	76.957	0					52	20	3	0	0	0	0.22295	1	19732	19732		29.841	21.095	1	320460		+	55739	209	32015	32016	68087	68087					0.07087773171224399
VVPPFLQPEV	10	Unmodified	_VVPPFLQPEV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8212280273438	2	562.82115	1123.62775	0.19787	0.00011137	0.25402	0.00014297	0.4519	0.00025434	562.82133940123	76.615	0.71616	76.669	76.371	77.088	0.053413					61	25	3	0	0	0	0.22295	2	19749	19694;19749		29.841	16.798	1	405230		+	55740	209	32015	32016	68088;68089	68089					0.07087773171224399
VVPPFLQPEV	10	Unmodified	_VVPPFLQPEV_					0	0	0		CON__P02666	CON__P02666	CON__P02666	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.8214111328125	2	562.82115	1123.62775	0.43769	0.00024634	-0.26282	-0.00014792	0.17487	9.8418E-05	562.8211909016152	76.673	0.64841	76.641	76.37	77.019	-0.031487					52	23	3	0	0	0	0.16839	1	19731	19731		36.506	24.266	1	418890		+	55741	209	32015	32016	68090	68090					0.07087773171224399
VVPPPMVLAL	10	Unmodified	_VVPPPMVLAL_					0	0	0			REV__ENST00000411556.2_1_9:44472681-44473188:+|nuORF	REV__ENST00000411556.2_1_9:44472681-44473188:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3174438476562	2	518.317189	1034.61982	0.44447	0.00023038	-0.18415	-9.5449E-05	0.26032	0.00013493	518.316914650911	79.414	1.7472	79.385	78.954	80.701	-0.028923					159	66	4	0	0	0	0.39536	1	20473	20473		4.3292	2.0265	1	1027000	+		55742	20776	32016	32017	68091	68091					0.10389922650097105
VVPQNRRPCKV	11	Unmodified	_VVPQNRRPCKV_					0	0	0			REV__ENSG00000177853|ENST00000316045|ZNF518A	REV__ENSG00000177853|ENST00000316045|ZNF518A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5960388183594	3	432.583679	1294.72921	0.21004	9.0858E-05	-0.24148	-0.00010446	-0.031448	-1.3604E-05	432.58352126044105	41.737	0.48715	41.834	41.748	42.235	0.096622					27	17	2	0	0	0	0.45202	1	9097	9097		4.4062	0.28952	1	886620	+		55743	18006	32017	32018	68092	68092					0.09363321322143747
VVPRGPDGA	9	Unmodified	_VVPRGPDGA_					0	0	0		ENST00000480273.5_1_20:62319266-62327135:+|nuORF;nc|ENSG00000258366|Q9NZ71-9|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-2|RTEL1	ENST00000480273.5_1_20:62319266-62327135:+|nuORF	ENST00000480273.5_1_20:62319266-62327135:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.2390441894531	2	434.237784	866.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.059	1	91.059	90.559	91.559	0								0	0	0	0.2575	1	24164	24164		3.9444	1.3669	1				55744	8639	32018	32019	68093	68093					0.02244345066196729
VVPRGPDGA	9	Unmodified	_VVPRGPDGA_					0	0	0		ENST00000480273.5_1_20:62319266-62327135:+|nuORF;nc|ENSG00000258366|Q9NZ71-9|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-2|RTEL1	ENST00000480273.5_1_20:62319266-62327135:+|nuORF	ENST00000480273.5_1_20:62319266-62327135:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.23858642578125	2	434.237784	866.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.991	1	91.081	90.581	91.581	0.090668								0	0	0	0.2575	1	24133	24133		3.9444	1.0552	1				55745	8639	32018	32019	68094	68094					0.02244345066196729
VVPRGPDGA	9	Unmodified	_VVPRGPDGA_					0	0	0		ENST00000480273.5_1_20:62319266-62327135:+|nuORF;nc|ENSG00000258366|Q9NZ71-9|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-2|RTEL1	ENST00000480273.5_1_20:62319266-62327135:+|nuORF	ENST00000480273.5_1_20:62319266-62327135:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.23883056640625	2	434.237784	866.461016	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.063	1	91.064	90.564	91.564	0.00046539								0	0	0	0.2575	1	24154	24154		3.9444	1.0552	1				55746	8639	32018	32019	68095	68095					0.02244345066196729
VVPRQLLLL	9	Unmodified	_VVPRQLLLL_					0	0	0		ENST00000474541.1_1_1:247241930-247242071:-|nuORF	ENST00000474541.1_1_1:247241930-247242071:-|nuORF	ENST00000474541.1_1_1:247241930-247242071:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8552856445312	2	525.855327	1049.6961	0.22956	0.00012072	0.17407	9.1537E-05	0.40363	0.00021225	525.855470773515	80.971	0.38354	81.036	80.859	81.243	0.065094					23	18	2	0	0	0	0.28128	1	21092	21092		11.64	0	1	94254			55747	10925	32019	32020	68096	68096					0.17324062541774765
VVPRTLPVGT	10	Unmodified	_VVPRTLPVGT_					0	0	0		ENST00000248114.6_2_16:2036072-2036303:+|nuORF	ENST00000248114.6_2_16:2036072-2036303:+|nuORF	ENST00000248114.6_2_16:2036072-2036303:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.2794799804688	2	519.818941	1037.62333	0.48583	0.00025254	-0.046733	-2.4293E-05	0.43909	0.00022825	519.8187544688858	50.122	0.58823	50.122	49.819	50.407	0					32	21	2	0	0	0	0.30586	1	11648	11648		13.906	0	1	499860			55748	8905	32020	32021	68097	68097					0.10602308748320866
VVPSAPEVQE	10	Unmodified	_VVPSAPEVQE_					0	0	0		nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	nc|ENSG00000067141|Q92859-3|NEO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3191528320312	2	527.774396	1053.53424	0.28588	0.00015088	-0.27878	-0.00014713	0.0070981	3.7462E-06	527.7743868460035	19.113	0.37042	19.113	18.923	19.294	0					23	12	3	0	0	0	0.31629	1	2138	2138		10.074	2.1638	1	33070			55749	857	32021	32022	68098	68098					0.00961428998152769
VVPSGGFFPTI	11	Unmodified	_VVPSGGFFPTI_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8068237304688	2	560.8055	1119.59645	0.26245	0.00014718	1.1515	0.00064576	1.4139	0.00079294	560.8061697802184	80.649	1.0494	80.622	80.086	81.135	-0.026817					97	39	3	0	0	0	0.0084424	1	21039	21039		72.968	53.711	1	1613800			55750	6209	32022	32023	68099	68099					0.04143200137150416
VVPSGGFFPTI	11	Unmodified	_VVPSGGFFPTI_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.8055	1119.59645	0.26616	0.00014926	1.3161	0.00073807	1.5822	0.00088733	560.8062362136166	80.603	1.4047	80.603	79.742	81.147	0	-0.0086258	-2.7366E-05	NaN	72.968	131	58	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1522000			55751	6209	32022	32023							0.04143200137150416
VVPSGGFFPTI	11	Unmodified	_VVPSGGFFPTI_					0	0	0		ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	ENSG00000167778|ENST00000301463|SPRYD3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.8055	1119.59645	0.20697	0.00011607	1.4091	0.00079021	1.616	0.00090628	560.8062807608408	80.545	1.0505	80.61	80.083	81.133	0.065102	-0.0019502	7.6926E-05	NaN	72.968	104	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1954300			55752	6209	32022	32023							0.04143200137150416
VVPSNQKAIY	10	Unmodified	_VVPSNQKAIY_					0	0	0			REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF	REV__ENST00000479187.5_1_12:40692272-40758932:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2921142578125	2	559.813856	1117.61316	0.7419	0.00041532	1.8868	0.0010562	2.6287	0.0014716	559.8148625811519	60.571	0.52921	60.668	60.449	60.978	0.096985					29	18	2	0	0	0	0.30586	1	14866	14866		9.3831	0	1	2037500	+		55753	18581	32023	32024	68100	68100					0.05905701023107213
VVPTMDWLK	9	Unmodified	_VVPTMDWLK_					0	0	0			REV__ENSG00000139668|ENST00000298125|WDFY2	REV__ENSG00000139668|ENST00000298125|WDFY2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.317626953125	2	544.794078	1087.5736	0.55313	0.00030134	-2.5787	-0.0014049	-2.0256	-0.0011035	544.7918675724516	113.67	0.38374	113.68	113.47	113.85	0.014832					64	47	2	0	0	0	0.25988	1	29597	29597		3.9444	0	1	36984	+		55754	16000	32024	32025	68101	68101					0.03331857748003131
VVPWVLDV	8	Unmodified	_VVPWVLDV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	463.2836608886719	2	463.770929	925.527304	0.3048	0.00014136	0.41807	0.00019389	0.72287	0.00033524	463.77085071351655	89.937	0.41013	89.938	89.786	90.196	0.0003891					53	36	2	0	0	0	0.34337	1	23862	23862		5.2307	0	1	79952			55755	3999	32025	32026	68102	68102					0.061561609082332325
VVQDGITLITK	11	Unmodified	_VVQDGITLITK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8558959960938	2	593.855721	1185.69689	0.55113	0.00032729	0.30921	0.00018362	0.86033	0.00051091	593.8559997530571	48.998	1.3442	48.998	48.448	49.793	0					113	48	4	0	0	0	1.3965E-12	3	11261	11216;11261;11312		160.91	114.88	1	4453400			55756	1126	32026	32027	68103;68104;68105	68104					0.11146812400124873
VVQDGITLITK	11	Unmodified	_VVQDGITLITK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8558349609375	2	593.855721	1185.69689	0.48042	0.0002853	0.40573	0.00024095	0.88616	0.00052625	593.8560461262628	49	1.3553	49.045	48.47	49.825	0.044891					115	49	4	0	0	0	6.2338E-13	2	11281	11228;11281		171.55	132.34	1	4661500			55757	1126	32026	32027	68106;68107	68107					0.11146812400124873
VVQDGITLITK	11	Unmodified	_VVQDGITLITK_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.85595703125	2	593.855721	1185.69689	0.25739	0.00015285	0.24677	0.00014655	0.50416	0.0002994	593.8557784353073	48.942	0.98735	48.974	48.743	49.73	0.032043					96	35	4	0	0	0	6.2338E-13	3	11248	11201;11248;11301		171.55	132.34	1	4294500			55758	1126	32026	32027	68108;68109;68110	68109					0.11146812400124873
VVQDMLVPMK	10	2 Oxidation (M)	_VVQDM(Oxidation (M))LVPM(Oxidation (M))K_		VVQDM(1)LVPM(1)K		VVQDM(41)LVPM(41)K	0	0	2		ENSG00000116133|ENST00000371269|DHCR24;nc|ENSG00000116133|Q15392-2|DHCR24;DHCR24|p.H382Y|1|0.34|ENSG00000116133|chr1:54854111-54854111|G/A|missense_variant	ENSG00000116133|ENST00000371269|DHCR24	ENSG00000116133|ENST00000371269|DHCR24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.309326171875	2	596.309235	1190.60392	-0.079201	-4.7228E-05	0.078094	4.6568E-05	-0.0011062	-6.5963E-07	596.3091797122296	34.443	1.2505	34.52	33.89	35.141	0.077377					69	44	3	0	0	0	0.13386	1	6765	6765		40.725	20.31	1	247770			55759	2704	32027	32028	68111	68111		336;337			0.016238483509141588
VVQEPGQVFK	10	Unmodified	_VVQEPGQVFK_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6;ENST00000570007.1_1_16:28117306-28117714:-|nuORF	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.8139038085938	2	565.813856	1129.61316	0.54561	0.00030871	-0.61753	-0.00034941	-0.071926	-4.0697E-05	565.8133137786413	36.987	0.859	36.987	36.673	37.532	0					73	30	4	0	0	0	0.0071242	1	7545	7545		85.764	45.815	1	1081000			55760	6334	32028	32029	68112	68112					0.05353701023113899
VVQEPGQVFK	10	Unmodified	_VVQEPGQVFK_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6;ENST00000570007.1_1_16:28117306-28117714:-|nuORF	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.8133544921875	2	565.813856	1129.61316	0.47603	0.00026934	-0.3826	-0.00021648	0.093427	5.2862E-05	565.8135292139808	36.869	0.86979	36.957	36.682	37.552	0.08741					60	26	3	0	0	0	0.0055648	1	7506	7506		88.364	53.962	1	1106900			55761	6334	32028	32029	68113	68113					0.05353701023113899
VVQEPGQVFK	10	Unmodified	_VVQEPGQVFK_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6;ENST00000570007.1_1_16:28117306-28117714:-|nuORF	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.8137817382812	2	565.813856	1129.61316	0.58992	0.00033378	-0.50816	-0.00028753	0.081752	4.6256E-05	565.813441366111	36.836	0.89138	36.929	36.633	37.524	0.093018					63	32	3	0	0	0	0.0055648	1	7501	7501		88.364	55.578	1	1197100			55762	6334	32028	32029	68114	68114					0.05353701023113899
VVQFYHLP	8	Unmodified	_VVQFYHLP_					0	0	0			REV__ENSG00000188818|ENST00000283441|ZDHHC11	REV__ENSG00000188818|ENST00000283441|ZDHHC11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.3039245605469	2	501.774003	1001.53345	0.50162	0.0002517	-0.95244	-0.00047791	-0.45082	-0.00022621	501.7737428826412	19.905	0.27331	19.85	19.705	19.978	-0.055691					17	9	3	0	0	0	0.34218	1	2346	2346		9.3474	3.587	1	32290	+		55763	18574	32029	32030	68115	68115					0.0327467913974715
VVQGEMRVP	9	Unmodified	_VVQGEMRVP_					0	0	0		nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170;nc|ENSG00000143702|Q5SW79-2|CEP170;ENST00000502249.6_1_4:119388789-119401509:+|nuORF	nc|ENSG00000143702|Q5SW79-3|CEP170	nc|ENSG00000143702|Q5SW79-3|CEP170	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.7736511230469	2	507.773677	1013.5328	0.21017	0.00010672	-0.69248	-0.00035162	-0.48231	-0.0002449	507.77327381170886	24.1	0.68521	24.1	23.769	24.454	0					60	23	3	0	0	0	0.29176	1	3635	3635		10.074	0.6908	1	238060			55764	4541	32030	32031	68116	68116					0.026575164283940467
VVQIDLSVPLK	11	Unmodified	_VVQIDLSVPLK_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.7943115234375	2	605.873914	1209.73327	0.30661	0.00018577	-0.12172	-7.375E-05	0.18489	0.00011202	605.873942224217	62.77	0.3967	62.761	62.597	62.994	-0.0085526					29	14	3	0	0	0	0.33198	1	15567	15567		4.5289	1.7937	1	281080			55765	802	32031	32032	68117	68117					0.13679689296827746
VVQIPDVLI	9	Unmodified	_VVQIPDVLI_					0	0	0			REV__ENSG00000185000|ENST00000528718|DGAT1	REV__ENSG00000185000|ENST00000528718|DGAT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.31024169921875	2	498.310418	994.606283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.662	1	92.751	92.251	93.251	0.089195								0	0	0	0.25499	1	24650	24650		4.756	1.8668	1		+		55766	18347	32032	32033	68118	68118					0.1087638814251477
VVQKWPPA	8	Unmodified	_VVQKWPPA_					0	0	0		ENST00000600048.1_1_19:59082132-59084077:-|nuORF	ENST00000600048.1_1_19:59082132-59084077:-|nuORF	ENST00000600048.1_1_19:59082132-59084077:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	464.2846984863281	2	462.76872	923.522887	0.14078	6.5147E-05	-0.077052	-3.5657E-05	0.063724	2.9489E-05	462.7688052620998	35.807	0.73813	35.889	35.57	36.308	0.082355					70	26	4	0	0	0	0.42446	1	7186	7186		14.582	2.0501	1	1433100			55767	12246	32033	32034	68119	68119					0.058066964853082936
VVQLEQER	8	Unmodified	_VVQLEQER_					0	0	0			REV__ENST00000473522.1_1_3:9883665-9885335:-|nuORF	REV__ENST00000473522.1_1_3:9883665-9885335:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.3039245605469	2	500.774731	999.534909	0.43798	0.00021933	-0.23007	-0.00011521	0.20791	0.00010412	500.7744898631295	19.771	0.41402	19.716	19.516	19.93	-0.055693					23	14	2	0	0	0	0.33993	1	2346	2346		16.942	1.0951	1	43745	+		55768	16765	32034	32035	68120	68120					0.035122684378507074
VVQLFITAH	9	Unmodified	_VVQLFITAH_					0	0	0			REV__nc|ENSG00000177098|Q8IWT1-2|SCN4B	REV__nc|ENSG00000177098|Q8IWT1-2|SCN4B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2981567382812	2	514.300384	1026.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.021	1	91.112	90.612	91.612	0.090668								0	0	0	0.25631	1	24142	24142		4.3292	0	1		+		55769	17972	32035	32036	68121	68121					0.07398637202550162
VVQLPWTL	8	Unmodified	_VVQLPWTL_					0	0	0		ENSG00000169403|ENST00000373857|PTAFR	ENSG00000169403|ENST00000373857|PTAFR	ENSG00000169403|ENST00000373857|PTAFR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2848815917969	2	478.284203	954.553853	0.16689	7.982E-05	0.12405	5.9333E-05	0.29094	0.00013915	478.2843524374214	68.36	0.48888	68.432	68.24	68.729	0.071938					27	17	2	0	0	0	0.32038	1	17223	17223		28.487	3.813	1	325730			55770	6355	32036	32037	68122	68122					0.07475849799561729
VVQNDIYRIL	10	Unmodified	_VVQNDIYRIL_					0	0	0			REV__ENST00000465409.1_1_10:104183185-104183703:-|nuORF	REV__ENST00000465409.1_1_10:104183185-104183703:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5716247558594	3	411.571434	1231.69247	0.15456	6.3613E-05	0.14399	5.9261E-05	0.29855	0.00012287	411.5714608656254	32.643	0.81746	32.697	32.441	33.258	0.054375					79	29	3	0	0	0	0.37297	1	6325	6325		8.4443	0.96724	1	1002600	+		55771	14570	32037	32038	68123	68123					0.08589347977249417
VVQQRAGK	8	Unmodified	_VVQQRAGK_					0	0	0			REV__ENST00000549185.5_3_14:31803609-31872202:-|nuORF	REV__ENST00000549185.5_3_14:31803609-31872202:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	442.7510681152344	2	443.266876	884.519199	0.015446	6.8466E-06	0.072418	3.21E-05	0.087863	3.8947E-05	443.2667665755522	19.137	0.62386	19.137	18.923	19.547	0					40	21	3	0	0	0	0.34185	1	2222	2222		10.183	0.83596	1	115140	+		55772	15417	32038	32039	68124	68124					0.07232026711460549
VVQQRAGK	8	Unmodified	_VVQQRAGK_					0	0	0			REV__ENST00000549185.5_3_14:31803609-31872202:-|nuORF	REV__ENST00000549185.5_3_14:31803609-31872202:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.75115966796875	2	443.266876	884.519199	0.022004	9.7536E-06	-0.1365	-6.0506E-05	-0.1145	-5.0752E-05	443.26669473625446	19.306	0.83663	19.19	18.863	19.7	-0.11592					51	28	3	0	0	0	0.34185	1	2276	2276		10.183	3.4602	1	103790	+		55773	15417	32038	32039	68125	68125					0.07232026711460549
VVQQRAGK	8	Unmodified	_VVQQRAGK_					0	0	0			REV__ENST00000549185.5_3_14:31803609-31872202:-|nuORF	REV__ENST00000549185.5_3_14:31803609-31872202:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7510986328125	2	443.266876	884.519199	0.12417	5.5042E-05	-0.038185	-1.6926E-05	0.085988	3.8116E-05	443.26671020190327	19.19	0.66759	19.134	18.903	19.571	-0.055693					43	22	3	0	0	0	0.34185	1	2253	2253		10.183	4.9527	1	130060	+		55774	15417	32038	32039	68126	68126					0.07232026711460549
VVQRVEIHK	9	Unmodified	_VVQRVEIHK_					0	0	0		ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	ENSG00000213977|ENST00000225525|TAX1BP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8014526367188	2	554.33529	1106.65603	0.28053	0.00015551	1.148	0.00063637	1.4285	0.00079188	554.3359819998635	16.854	0.31975	16.854	16.749	17.069	0					16	10	2	0	0	0	0.26204	1	1441	1441		1.4819	0	1	56091			55775	8369	32039	32040	68127	68127					0.10696515871154588
VVQSRARP	8	Unmodified	_VVQSRARP_					0	0	0		ENST00000381652.3_1_9:4985473-5022055:+|nuORF	ENST00000381652.3_1_9:4985473-5022055:+|nuORF	ENST00000381652.3_1_9:4985473-5022055:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	456.7724304199219	2	456.772326	911.530098	0.49462	0.00022593	-0.43999	-0.00020098	0.054628	2.4953E-05	456.77213785927756	77.17	0.74751	77.138	76.852	77.599	-0.031334					57	26	3	0	0	0	0.45307	1	19948	19948		4.756	0	1	379700			55776	10000	32040	32041	68128	68128					0.07079429085740685
VVQSVLSK	8	Unmodified	_VVQSVLSK_					0	0	0		ENST00000470105.1_1_9:116790870-116812444:+|nuORF;nc|ENSG00000157657|Q5T7W0-2|ZNF618;nc|ENSG00000157657|Q5T7W0-4|ZNF618;ENSG00000157657|ENST00000374126|ZNF618	ENST00000470105.1_1_9:116790870-116812444:+|nuORF	ENST00000470105.1_1_9:116790870-116812444:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8880310058594	2	430.26601	858.517468	-0.31021	-0.00013347	0.35868	0.00015433	0.04847	2.0855E-05	430.26612741610074	27.454	0.76714	27.442	27.213	27.98	-0.011562					44	26	3	0	0	0	0.34092	1	4711	4711		8.5933	0	1	337860			55777	5320	32041	32042	68129	68129					0.08254972902841473
VVRDFWYN	8	Unmodified	_VVRDFWYN_					0	0	0			REV__ENST00000377275.3_1_10:18964472-18964637:+|nuORF	REV__ENST00000377275.3_1_10:18964472-18964637:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7730712890625	2	549.771991	1097.52943	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.987	1	18.929	18.429	19.429	-0.058174								0	0	0	0.34492	1	2096	2096		16.942	1.0951	1		+		55778	20503	32042	32043	68130	68130					-0.015434103539519128
VVREEVSRRGR	11	Unmodified	_VVREEVSRRGR_					0	0	0		nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.7610778808594	3	448.260253	1341.75893	-0.02382	-1.0677E-05	3.1295	0.0014028	3.1057	0.0013922	448.26276261427404	17.284	0.55205	17.167	16.937	17.489	-0.11739					43	19	4	0	0	0	0.33236	1	1567	1567		4.4062	1.5629	1	192860			55779	6972	32043	32044	68131	68131					0.10171976591823295
VVRFLQLT	8	Unmodified	_VVRFLQLT_					0	0	0		ENST00000526066.5_1_11:66366934-66367108:+|nuORF;ENSG00000173992|ENST00000533244|CCS	ENST00000526066.5_1_11:66366934-66367108:+|nuORF	ENST00000526066.5_1_11:66366934-66367108:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2848205566406	2	488.302927	974.591301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.53	1	113.51	113.01	114.01	-0.017303								0	0	0	0.37183	1	29509	29509		4.756	0.81161	1				55780	6765	32044	32045	68132	68132					0.10298941065184408
VVRGTHWAE	9	Unmodified	_VVRGTHWAE_					0	0	0		ENST00000464829.5_1_9:33462182-33469499:-|nuORF	ENST00000464829.5_1_9:33462182-33469499:-|nuORF	ENST00000464829.5_1_9:33462182-33469499:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.3192138671875	2	527.775065	1053.53558	0.29933	0.00015798	-1.7693	-0.00093377	-1.4699	-0.00077579	527.7745971052636	19.278	0.27923	19.162	19.005	19.284	-0.11592					12	9	2	0	0	0	0.25706	1	2174	2174		6.7232	0.51738	1	37304			55781	10788	32045	32046	68133	68133					0.010951078775406131
VVRHARFKI	9	Unmodified	_VVRHARFKI_					0	0	0			REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E	REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3538208007812	2	563.353817	1124.69308	0.19226	0.00010831	0.12187	6.8656E-05	0.31413	0.00017697	563.3535486391975	59.191	1.1147	59.191	58.891	60.006	0					104	39	4	0	0	0	0.11517	3	14399	14357;14399;14444		36.044	36.044	1	8635100	+		55782	23003	32046	32047	68134;68135;68136	68135					0.13572232207616253
VVRHARFKI	9	Unmodified	_VVRHARFKI_					0	0	0			REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E	REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8085327148438	2	563.353817	1124.69308	0.19226	0.00010831	0.12187	6.8656E-05	0.31413	0.00017697	563.3535486391975	59.191	1.1147	59.191	58.891	60.006	0					104	39	4	0	0	0	0.24311	1	14491	14491		16.942	0	1	8635100	+		55783	23003	32046	32047	68137	68137					0.13572232207616253
VVRHMRKLHL	10	Unmodified	_VVRHMRKLHL_					0	0	0		nc|ENSG00000183049|Q8IU85-2|CAMK1D;ENSG00000183049|ENST00000619168|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	nc|ENSG00000183049|Q8IU85-2|CAMK1D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.88653564453125	3	430.264281	1287.77101	-0.2639	-0.00011355	-0.86099	-0.00037045	-1.1249	-0.000484	430.2640683762829	15.415	0.53839	15.305	15.01	15.549	-0.10981					31	18	3	0	0	0	0.32162	1	957	957		0.77653	0.078866	1	48003			55784	7343	32047	32048	68138	68138					0.1386392180133953
VVRPRAGK	8	Unmodified	_VVRPRAGK_					0	0	0			REV__ENSG00000105270|ENST00000360535|CLIP3	REV__ENSG00000105270|ENST00000360535|CLIP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7488708496094	2	441.785236	881.555919	-0.15269	-6.7457E-05	0.31107	0.00013743	0.15838	6.9971E-05	441.78537218588394	13.499	0.32431	13.499	13.336	13.66	0					20	10	3	0	0	0	0.34337	1	447	447		5.2307	0	1	59177	+		55785	14445	32048	32049	68139	68139					0.11040323328029444
VVRPRAGK	8	Unmodified	_VVRPRAGK_					0	0	0			REV__ENSG00000105270|ENST00000360535|CLIP3	REV__ENSG00000105270|ENST00000360535|CLIP3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	441.785236	881.555919	-0.24196	-0.00010689	0.43766	0.00019335	0.1957	8.6456E-05	441.7853999170055	13.563	0.30099	13.464	13.337	13.638	-0.099291	-0.036091	6.7978E-05	NaN	5.2307	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47389	+		55786	14445	32048	32049							0.11040323328029444
VVRQRERKPVR	11	Unmodified	_VVRQRERKPVR_					0	0	0		ENST00000371313.2_1_X:119761281-119763842:-|nuORF	ENST00000371313.2_1_X:119761281-119763842:-|nuORF	ENST00000371313.2_1_X:119761281-119763842:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	475.25469970703125	3	474.963659	1421.86915	0.27846	0.00013226	1.4714	0.00069888	1.7499	0.00083114	474.9642997806479	29.845	0.31391	29.845	29.686	29.999	0					17	10	2	0	0	0	0.3325	1	5410	5410		4.1166	3.6621	1	144730			55787	9814	32049	32050	68140	68140					0.17508821650858408
VVRQRERKPVR	11	Unmodified	_VVRQRERKPVR_					0	0	0		ENST00000371313.2_1_X:119761281-119763842:-|nuORF	ENST00000371313.2_1_X:119761281-119763842:-|nuORF	ENST00000371313.2_1_X:119761281-119763842:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.25482177734375	3	474.963659	1421.86915	0.30051	0.00014273	1.2467	0.00059212	1.5472	0.00073486	474.9643156301325	29.801	0.29452	29.813	29.654	29.948	0.012266					21	9	3	0	0	0	0.33296	1	5352	5352		2.6312	2.0044	1	98290			55788	9814	32049	32050	68141	68141					0.17508821650858408
VVRQRERKPVR	11	Unmodified	_VVRQRERKPVR_					0	0	0		ENST00000371313.2_1_X:119761281-119763842:-|nuORF	ENST00000371313.2_1_X:119761281-119763842:-|nuORF	ENST00000371313.2_1_X:119761281-119763842:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.254638671875	3	474.963659	1421.86915	-0.013663	-6.4894E-06	1.4366	0.00068235	1.423	0.00067586	474.964414250166	29.818	0.38482	29.832	29.684	30.069	0.013474					28	12	3	0	0	0	0.33296	1	5400	5400		2.6312	2.1767	1	161820			55789	9814	32049	32050	68142	68142					0.17508821650858408
VVRRPFHTSE	10	Unmodified	_VVRRPFHTSE_					0	0	0		ENST00000295709.7_1_2:219536839-219537529:+|nuORF	ENST00000295709.7_1_2:219536839-219537529:+|nuORF	ENST00000295709.7_1_2:219536839-219537529:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.8912048339844	3	409.891278	1226.652	-0.31401	-0.00012871	-0.43534	-0.00017844	-0.74936	-0.00030716	409.8912048898432	13.178	0.67314	13.111	12.819	13.493	-0.067496					69	23	5	0	0	0	0.37568	1	360	360		7.9454	0.46833	1	279350			55790	9173	32050	32051	68143	68143					0.047744263774802675
VVRSRIQT	8	Unmodified	_VVRSRIQT_					0	0	0		nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2	nc|ENSG00000103197|P49815-4|TSC2	nc|ENSG00000103197|P49815-4|TSC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2145080566406	2	479.793258	957.571963	0.055166	2.6468E-05	-0.35412	-0.0001699	-0.29895	-0.00014343	479.7929970152301	27.308	0.39298	27.287	27.1	27.493	-0.021412					21	13	2	0	0	0	0.34039	1	4613	4613		15.847	4.2069	1	110160			55791	1817	32051	32052	68144	68144					0.0914798477426757
VVRSRPLG	8	Unmodified	_VVRSRPLG_					0	0	0			REV__ENST00000490190.1_1_18:6964066-6965410:-|nuORF	REV__ENST00000490190.1_1_18:6964066-6965410:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.75115966796875	2	442.277244	882.539935	-0.050673	-2.2411E-05	0.23614	0.00010444	0.18547	8.203E-05	442.27725943848077	18.884	0.92889	18.767	18.531	19.46	-0.11739					60	32	3	0	0	0	0.34297	1	2276	2276		6.3541	0	1	253550	+		55792	14283	32052	32053	68145	68145					0.09396617091135795
VVRTTAATTLG	11	Unmodified	_VVRTTAATTLG_					0	0	0			REV__ENST00000472267.5_1_6:30587464-30587587:+|nuORF	REV__ENST00000472267.5_1_6:30587464-30587587:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3171997070312	2	545.316763	1088.61897	0.55019	0.00030003	-0.15755	-8.5912E-05	0.39265	0.00021412	545.3167697948801	119.46	1.0496	119.49	118.98	120.03	0.027756					193	129	2	0	0	0	0.48558	1	31009	31009		0	0	1	38751	+		55793	21366	32053	32054	68146	68146					0.07820799534738399
VVSAHTAKHCK	11	Unmodified	_VVSAHTAKHCK_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-3|DNAH14;nc|ENSG00000185842|Q0VDD8-2|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14	nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.7196655273438	2	590.816407	1179.61826	0.98293	0.00058073	-2.1114	-0.0012474	-1.1284	-0.0006667	591.3170309541235	50.291	0.13525	50.311	50.252	50.387	0.020691					6	4	2	0	0	0	0.32798	1	11635	11635		7.609	0	1	68931			55794	12881;7561	32054	32055	68147	68147					0.03563681614059533
VVSANCKL	8	Unmodified	_VVSANCKL_					0	0	0		nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC;nc|ENSG00000163689|Q6ZVT6|CFAP20DC;ENSG00000163689|ENST00000482387|CFAP20DC	nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC	nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.2431945800781	2	417.231113	832.447674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.801	1	35.884	35.384	36.384	0.082355								0	0	0	0.35985	1	7207	7207		10.183	0.83596	1				55795	5721	32055	32056	68148	68148					0.02474770962578532
VVSANCKL	8	Unmodified	_VVSANCKL_					0	0	0		nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC;nc|ENSG00000163689|Q6ZVT6|CFAP20DC;ENSG00000163689|ENST00000482387|CFAP20DC	nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC	nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.2431640625	2	417.231113	832.447674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.795	1	35.882	35.382	36.382	0.08625								0	0	0	0.35985	1	7198	7198		10.183	0.83596	1				55796	5721	32055	32056	68149	68149					0.02474770962578532
VVSCEKDSEKR	11	Unmodified	_VVSCEKDSEKR_					0	0	0			REV__ENSG00000051341|ENST00000264233|POLQ	REV__ENSG00000051341|ENST00000264233|POLQ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.3200073242188	2	640.319177	1278.6238	0.37654	0.00024111	-0.054713	-3.5034E-05	0.32183	0.00020607	640.319120342652	19.348	0.57673	19.293	18.819	19.395	-0.055693					26	19	2	0	0	0	0.48558	1	2098	2098		0	0	1	32321	+		55797	13568	32056	32057	68150	68150					-0.00436684384817454
VVSDGVLLY	9	Unmodified	_VVSDGVLLY_					0	0	0			REV__ENST00000460338.5_1_13:103436847-103443499:-|nuORF	REV__ENST00000460338.5_1_13:103436847-103443499:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.771240234375	2	482.771126	963.527698	0.18892	9.1207E-05	0.043451	2.0977E-05	0.23238	0.00011218	482.77111907005076	67.097	1.1548	67.175	66.82	67.975	0.078041					122	40	4	0	0	0	0.013276	1	16901	16901		74.396	0	1	5347900	+		55798	15709	32057	32058	68151	68151					0.044475358374370444
VVSEIPVLK	9	Unmodified	_VVSEIPVLK_					0	0	0		ENST00000482672.1_1_1:161123787-161126762:+|nuORF;ENST00000473766.5_1_1:161123787-161127484:+|nuORF;ENSG00000143222|ENST00000368003|UFC1	ENST00000482672.1_1_1:161123787-161126762:+|nuORF	ENST00000482672.1_1_1:161123787-161126762:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.310302734375	2	492.310418	982.606283	0.56189	0.00027662	0.24247	0.00011937	0.80437	0.000396	492.3102754837564	48.402	0.7608	48.402	48.012	48.773	0					64	26	4	0	0	0	0.026033	1	11077	11077		72.968	15.246	1	672730			55799	4490	32058	32059	68152	68152					0.11428388142519452
VVSEIPVLK	9	Unmodified	_VVSEIPVLK_					0	0	0		ENST00000482672.1_1_1:161123787-161126762:+|nuORF;ENST00000473766.5_1_1:161123787-161127484:+|nuORF;ENSG00000143222|ENST00000368003|UFC1	ENST00000482672.1_1_1:161123787-161126762:+|nuORF	ENST00000482672.1_1_1:161123787-161126762:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.31048583984375	2	492.310418	982.606283	0.74246	0.00036552	-0.3351	-0.00016497	0.40736	0.00020055	492.31017658789375	48.339	0.64399	48.387	48.101	48.745	0.047523					53	23	3	0	0	0	0.13748	1	11112	11112		32.786	5.1569	1	624360			55800	4490	32058	32059	68153	68153					0.11428388142519452
VVSEIPVLK	9	Unmodified	_VVSEIPVLK_					0	0	0		ENST00000482672.1_1_1:161123787-161126762:+|nuORF;ENST00000473766.5_1_1:161123787-161127484:+|nuORF;ENSG00000143222|ENST00000368003|UFC1	ENST00000482672.1_1_1:161123787-161126762:+|nuORF	ENST00000482672.1_1_1:161123787-161126762:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.3110046386719	2	492.310418	982.606283	0.56095	0.00027616	0.30166	0.00014851	0.86261	0.00042467	492.31043843784806	48.338	0.59977	48.381	48.121	48.721	0.04332					57	22	4	0	0	0	0.20167	1	11117	11117		29.082	9.8246	1	716510			55801	4490	32058	32059	68154	68154					0.11428388142519452
VVSEKQFSK	9	Unmodified	_VVSEKQFSK_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2928466796875	2	526.292756	1050.57096	0.43832	0.00023069	0.20455	0.00010765	0.64287	0.00033834	526.2927346120068	17.74	0.82175	17.74	17.477	18.299	0					56	27	3	0	0	0	0.01909	2	1699	1699;1748		65.474	31.072	1	284290			55802	5705	32059	32060	68155;68156	68155					0.04769725614710296
VVSEKQFSK	9	Unmodified	_VVSEKQFSK_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2935180664062	2	526.292756	1050.57096	0.26377	0.00013882	0.3576	0.0001882	0.62137	0.00032702	526.2928262659187	17.946	0.54734	17.828	17.603	18.151	-0.11739					45	18	3	0	0	0	0.059067	2	1757	1757;1804		49.527	15.126	1	347810			55803	5705	32059	32060	68157;68158	68157					0.04769725614710296
VVSEKQFSK	9	Unmodified	_VVSEKQFSK_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.29296875	2	526.292756	1050.57096	0.34832	0.00018332	0.19346	0.00010182	0.54178	0.00028514	526.2927575136832	17.868	0.63675	17.808	17.56	18.197	-0.060429					62	22	4	0	0	0	0.068498	2	1785	1734;1785		46.022	26.869	1	272940			55804	5705	32059	32060	68159;68160	68160					0.04769725614710296
VVSGFVFLR	9	Unmodified	_VVSGFVFLR_					0	0	0		ENST00000515800.6_1_5:86667940-86686697:+|nuORF;nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;RASA1|p.D972Tfs*6|1|0.13|ENSG00000145715|chr5:87386891-87386895|AGATG/-|frameshift_variant;ENSG00000145715|ENST00000274376|RASA1	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.279052734375	2	512.302927	1022.5913	0.39692	0.00020334	-0.93243	-0.00047769	-0.53552	-0.00027435	512.3024397664599	62.545	0.48741	62.545	62.369	62.856	0					30	17	2	0	0	0	0.18123	1	15426	15426		34.402	18.555	1	222270			55805	4666	32060	32061	68161	68161					0.08090941065188417
VVSGFVFLR	9	Unmodified	_VVSGFVFLR_					0	0	0		ENST00000515800.6_1_5:86667940-86686697:+|nuORF;nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;RASA1|p.D972Tfs*6|1|0.13|ENSG00000145715|chr5:87386891-87386895|AGATG/-|frameshift_variant;ENSG00000145715|ENST00000274376|RASA1	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2789306640625	2	512.302927	1022.5913	0.34399	0.00017623	-0.93357	-0.00047827	-0.58958	-0.00030204	512.3023600791557	62.555	0.49365	62.652	62.332	62.826	0.096985					36	17	3	0	0	0	0.15943	1	15393	15393		32.786	17.947	1	253390			55806	4666	32060	32061	68162	68162					0.08090941065188417
VVSGFVFLR	9	Unmodified	_VVSGFVFLR_					0	0	0		ENST00000515800.6_1_5:86667940-86686697:+|nuORF;nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;RASA1|p.D972Tfs*6|1|0.13|ENSG00000145715|chr5:87386891-87386895|AGATG/-|frameshift_variant;ENSG00000145715|ENST00000274376|RASA1	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.279052734375	2	512.302927	1022.5913	0.26377	0.00013513	-1.1829	-0.00060602	-0.91915	-0.00047089	512.302308946628	62.573	0.52682	62.565	62.278	62.804	-0.0085526					37	19	3	0	0	0	0.12563	1	15412	15412		47.749	20.865	1	242560			55807	4666	32060	32061	68163	68163					0.08090941065188417
VVSIHGHL	8	Unmodified	_VVSIHGHL_					0	0	0			REV__ENSG00000166016|ENST00000435224|ABTB2	REV__ENSG00000166016|ENST00000435224|ABTB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8882141113281	2	431.250695	860.486836	-0.24927	-0.0001075	-0.30946	-0.00013346	-0.55874	-0.00024096	431.25047722378565	25.876	0.70031	25.876	25.798	26.499	0					35	24	2	0	0	0	0.34046	1	4206	4206		14.582	3.4672	1	76579	+		55808	17287	32061	32062	68164	68164					0.051012393084647556
VVSLPPSGK	9	Unmodified	_VVSLPPSGK_					0	0	0			REV__ENST00000493997.1_1_2:55086744-55094271:+|nuORF	REV__ENST00000493997.1_1_2:55086744-55094271:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7508239746094	2	442.26601	882.517468	0.039579	1.7504E-05	-0.3973	-0.00017571	-0.35772	-0.00015821	442.2659228947896	31.568	1.0345	31.568	30.948	31.982	0					77	36	3	0	0	0	0.22061	1	5901	5901		24.021	10.978	1	516670	+		55809	21647	32062	32063	68165	68165					0.07150972902854846
VVSLQKKMP	9	Unmodified	_VVSLQKKMP_					0	0	0			REV__ENST00000486339.6_1_16:2155565-2155748:-|nuORF	REV__ENST00000486339.6_1_16:2155565-2155748:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.8209228515625	2	515.309895	1028.60524	0.37224	0.00019182	0.89939	0.00046346	1.2716	0.00065529	515.8113019467063	62.393	1.3953	62.393	61.51	62.905	0					123	51	4	0	0	0	0.24471	1	15517	15517		12.241	0	1	839900	+		55810	21549	32063	32064	68166	68166					0.0920785050197992
VVSNAKCRNKI	11	Unmodified	_VVSNAKCRNKI_					0	0	0			REV__ENSG00000214842|ENST00000399080|RAD51AP2	REV__ENSG00000214842|ENST00000399080|RAD51AP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.9247131347656	3	411.236168	1230.68668	-0.28959	-0.00011909	0.54358	0.00022354	0.25399	0.00010445	411.23641712436205	12.813	0.52164	12.746	12.64	13.162	-0.067496					34	17	3	0	0	0	0.33255	1	326	326		2.6312	1.8547	1	190540	+		55811	19065	32064	32065	68167	68167					0.08055926193924279
VVSNILLAY	9	Unmodified	_VVSNILLAY_					0	0	0		ENST00000470179.5_1_2:197712669-197791463:-|nuORF;nc|ENSG00000197121|Q75T13-4|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;ENSG00000197121|ENST00000354764|PGAP1	ENST00000470179.5_1_2:197712669-197791463:-|nuORF	ENST00000470179.5_1_2:197712669-197791463:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.3042297363281	2	496.294768	990.574983	0.51443	0.00025531	-0.51003	-0.00025313	0.0044016	2.1845E-06	496.29443597645957	72.882	0.35361	72.882	72.667	73.02	0					19	12	2	0	0	0	0.24467	1	18633	18633		17.113	0	1	55035			55812	10863	32065	32066	68168	68168					0.0793181510841805
VVSRIRAAL	9	Unmodified	_VVSRIRAAL_					0	0	0		ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.8193054199219	2	492.819276	983.623999	0.32431	0.00015983	0.066475	3.276E-05	0.39079	0.00019259	492.81919766828673	30.818	0.78018	30.818	30.553	31.333	0					66	27	3	0	0	0	0.05341	2	5673	5673;5723		51.63	18.844	1	798260			55813	2230	32066	32067	68169;68170	68169					0.13153148188007435
VVSRIRAAL	9	Unmodified	_VVSRIRAAL_					0	0	0		ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.8194580078125	2	492.819276	983.623999	0.27023	0.00013317	0.068177	3.3599E-05	0.33841	0.00016677	492.81923333082915	30.802	0.86338	30.829	30.58	31.443	0.027946					66	30	3	0	0	0	0.014206	2	5673	5673;5719		72.968	40.182	1	834060			55814	2230	32066	32067	68171;68172	68171					0.13153148188007435
VVSRIRAAL	9	Unmodified	_VVSRIRAAL_					0	0	0		ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.81939697265625	2	492.819276	983.623999	0.1948	9.6003E-05	0.15512	7.6444E-05	0.34992	0.00017245	492.8192762356472	30.775	0.76676	30.802	30.584	31.351	0.027157					63	27	4	0	0	0	0.020233	2	5661	5661;5711		63.961	27.454	1	836770			55815	2230	32066	32067	68173;68174	68173					0.13153148188007435
VVSRTAGIR	9	Unmodified	_VVSRTAGIR_					0	0	0		ENST00000394580.2_1_19:5690342-5690432:+|nuORF	ENST00000394580.2_1_19:5690342-5690432:+|nuORF	ENST00000394580.2_1_19:5690342-5690432:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2146301269531	2	479.793258	957.571963	0.037106	1.7803E-05	0.03842	1.8434E-05	0.075526	3.6237E-05	479.79298817193035	27.343	0.43843	27.343	27.063	27.502	0					31	14	3	0	0	0	0.25202	1	4602	4602		6.7232	0	1	101090			55816	10073	32067	32068	68175	68175					0.09147984774278939
VVSRWAPRRAR	11	Unmodified	_VVSRWAPRRAR_					0	0	0			REV__ENST00000368352.9_1_1:155292852-155294901:+|nuORF	REV__ENST00000368352.9_1_1:155292852-155294901:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.2538146972656	3	451.937333	1352.79017	-0.11413	-5.158E-05	-0.86611	-0.00039143	-0.98024	-0.00044301	451.9368899338466	14.964	0.47828	14.964	14.729	15.207	0					25	16	2	0	0	0	0.3333	1	832	832		1.3296	0	1	83675	+		55817	20336	32068	32069	68176	68176					0.1278859441658824
VVSTVKKT	8	Unmodified	_VVSTVKKT_					0	0	0			REV__ENSG00000110107|ENST00000227524|PRPF19	REV__ENSG00000110107|ENST00000227524|PRPF19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8882751464844	2	431.273835	860.533118	-0.24766	-0.00010681	0.0026574	1.1461E-06	-0.245	-0.00010566	431.2736567048194	22.441	0.31795	22.441	22.331	22.649	0					13	10	2	0	0	0	0.3439	1	3191	3191		2.8892	0.58649	1	32997	+		55818	14664	32069	32070	68177	68177					0.09727259419901202
VVSYAPFT	8	Unmodified	_VVSYAPFT_					0	0	0		nc|ENSG00000100983|P48637-2|GSS;ENSG00000100983|ENST00000651619|GSS	nc|ENSG00000100983|P48637-2|GSS	nc|ENSG00000100983|P48637-2|GSS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7683410644531	2	442.231636	882.448719	0.097389	4.3069E-05	0.45807	0.00020257	0.55545	0.00024564	442.2315529500139	40.003	0.69421	40.003	39.751	40.445	0					44	24	3	0	0	0	0.3366	1	8524	8524		12.532	0	1	225970			55819	1651	32070	32071	68178	68178					0.0027930860313745143
VVTATQRR	8	Unmodified	_VVTATQRR_					0	0	0		ENST00000435805.6_1_10:43047711-43048011:-|nuORF	ENST00000435805.6_1_10:43047711-43048011:-|nuORF	ENST00000435805.6_1_10:43047711-43048011:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.777587890625	2	465.777608	929.540663	0.061664	2.8722E-05	0.16078	7.4889E-05	0.22245	0.00010361	465.77756619140615	71.49	1.8231	71.49	70.873	72.696	0					199	65	4	0	0	0	0.43302	2	18354	18301;18354		11.64	11.64	1	2750300			55820	10513	32071	32072	68179;68180	68180					0.07307411740168845
VVTATQRR	8	Unmodified	_VVTATQRR_					0	0	0		ENST00000435805.6_1_10:43047711-43048011:-|nuORF	ENST00000435805.6_1_10:43047711-43048011:-|nuORF	ENST00000435805.6_1_10:43047711-43048011:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.77740478515625	2	465.777608	929.540663	0.29394	0.00013691	-0.13788	-6.4221E-05	0.15606	7.2688E-05	465.7774408601235	71.615	3.3981	71.588	70.637	74.035	-0.027275					249	122	4	0	0	0	0.45307	1	18194	18194		4.756	4.756	1	3172700			55821	10513	32071	32072	68181	68181					0.07307411740168845
VVTDEKRKF	9	Unmodified	_VVTDEKRKF_					0	0	0			REV__nc|ENSG00000165731|P07949-2|RET	REV__nc|ENSG00000165731|P07949-2|RET	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8064575195312	2	561.319306	1120.62406	0.26289	0.00014757	-1.0743	-0.000603	-0.81137	-0.00045544	561.3185289200725	80.926	0.68044	80.926	80.657	81.338	0					61	32	2	0	0	0	0.24739	1	20981	20981		13.508	0.97634	1	520570	+		55822	17262	32072	32073	68182	68182					0.06857103397373976
VVTDEKRKF	9	Unmodified	_VVTDEKRKF_					0	0	0			REV__nc|ENSG00000165731|P07949-2|RET	REV__nc|ENSG00000165731|P07949-2|RET	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.319306	1120.62406	0.13527	7.5931E-05	-0.9649	-0.00054162	-0.82963	-0.00046569	561.3186356211208	80.878	0.6678	80.943	80.678	81.346	0.065102	0.014104	2.0138E-05	NaN	13.508	61	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535190	+		55823	17262	32072	32073							0.06857103397373976
VVTIAPTK	8	Unmodified	_VVTIAPTK_					0	0	0		nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.2099609375	2	414.763104	827.511654	-0.16899	-7.0091E-05	-0.24517	-0.00010169	-0.41416	-0.00017178	414.7630359075868	26.216	0.2439	26.216	26.106	26.35	0					11	8	2	0	0	0	0.344	1	4257	4257		2.5775	0	1	26968			55824	3547	32073	32074	68183	68183					0.09099874391176854
VVTICDLIMIL	11	Unmodified	_VVTICDLIMIL_					0	0	0		nc|ENSG00000153551|Q96FZ5-2|CMTM7;ENSG00000153551|ENST00000334983|CMTM7	nc|ENSG00000153551|Q96FZ5-2|CMTM7	nc|ENSG00000153551|Q96FZ5-2|CMTM7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.57147216796875	3	411.571277	1231.692	0.0076023	3.1289E-06	0.70959	0.00029205	0.71719	0.00029518	411.57151132186016	32.785	0.86721	32.785	32.469	33.336	0					79	30	3	0	0	0	0.40701	1	6258	6258		10.315	1.8709	1	954120			55825	5079	32074	32075	68184	68184					0.08542468941527659
VVTIEFWE	8	Unmodified	_VVTIEFWE_					0	0	0			REV__ENST00000262207.8_1_8:75941652-75941691:+|nuORF	REV__ENST00000262207.8_1_8:75941652-75941691:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.28411865234375	2	511.7633	1021.51205	0.56182	0.00028752	-3.1166	-0.001595	-2.5548	-0.0013074	511.7613098388966	34.106	0.4203	34.106	33.916	34.336	0					32	14	3	0	0	0	0.34185	1	6751	6751		10.183	0	1	161670	+		55826	19607	32075	32076	68185	68185					0.0021524932037664257
VVTKMKMQ	8	Unmodified	_VVTKMKMQ_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;RPS11|p.R84G|1|0.26|ENSG00000142534|chr19:49497943-49497943|A/G|missense_variant	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.2674865722656	2	482.769548	963.524544	0.13821	6.6723E-05	-0.63058	-0.00030442	-0.49237	-0.0002377	482.76906330657386	39.434	0.33018	39.527	39.36	39.69	0.09267					19	11	2	0	0	0	0.34131	1	8337	8337		12.532	0	1	135800			55827	4449	32076	32077	68186	68186					0.041322461874187866
VVTKMKMQ	8	Unmodified	_VVTKMKMQ_					0	0	0		ENSG00000142534|ENST00000270625|RPS11;RPS11|p.R84G|1|0.26|ENSG00000142534|chr19:49497943-49497943|A/G|missense_variant	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	482.769548	963.524544	-0.12668	-6.116E-05	-0.85444	-0.0004125	-0.98113	-0.00047366	482.7691948736137	39.667	0.29665	39.667	39.454	39.751	0	0.069766	-0.0001359	NaN	12.532	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108820			55828	4449	32076	32077							0.041322461874187866
VVTMRDGR	8	Unmodified	_VVTMRDGR_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.6081237792969	2	467.250369	932.486184	0.10142	4.7386E-05	-0.72332	-0.00033797	-0.6219	-0.00029058	467.2500993380336	90.38	0.33606	90.471	90.288	90.624	0.090675					44	27	2	0	0	0	0.34353	1	23924	23924		4.756	0.42677	1	124380			55829	6837	32077	32078	68187	68187					0.017240765971109795
VVTPRRAT	8	Unmodified	_VVTPRRAT_					0	0	0			REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF	REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.274169921875	2	450.274701	898.534849	0.39145	0.00017626	-0.41724	-0.00018787	-0.025788	-1.1612E-05	450.2744348406221	82.801	1.3799	82.801	82.358	83.738	0					151	51	4	0	0	0	0.45307	2	21579	21579;21770		4.756	0	1	11029000	+		55830	22565	32078	32079	68188;68189	68188					0.08152313228504227
VVTPRRAT	8	Unmodified	_VVTPRRAT_					0	0	0			REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF	REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2745361328125	2	450.274701	898.534849	0.28532	0.00012847	-0.28611	-0.00012883	-0.00079307	-3.571E-07	450.2744885807236	82.737	1.3467	82.81	82.452	83.799	0.073097					123	52	3	0	0	0	0.45307	2	21540	21540;21727		4.756	0	1	11782000	+		55831	22565	32078	32079	68190;68191	68190					0.08152313228504227
VVTPRRAT	8	Unmodified	_VVTPRRAT_					0	0	0			REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF	REV__ENST00000591365.1_1_17:43298722-43299568:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.2747497558594	2	450.274701	898.534849	0.36379	0.0001638	-0.26926	-0.00012124	0.094529	4.2564E-05	450.27447917864663	82.884	1.3226	82.864	82.396	83.719	-0.020584					161	53	5	0	0	0	0.45307	1	21714	21714		4.756	0	1	12647000	+		55832	22565	32078	32079	68192	68192					0.08152313228504227
VVTRGPGMPT	10	Unmodified	_VVTRGPGMPT_					0	0	0			REV__ENST00000489586.6_1_1:236706790-236711458:+|nuORF	REV__ENST00000489586.6_1_1:236706790-236711458:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.773681640625	2	507.773677	1013.5328	0.17536	8.9042E-05	-0.27176	-0.00013799	-0.096406	-4.8952E-05	507.77353044933795	23.667	0.56361	23.594	23.257	23.821	-0.072557					51	19	3	0	0	0	0.37133	1	3532	3532		8.7454	8.7454	1	247470	+		55833	14949	32079	32080	68193	68193					0.026575164284054154
VVTSKGNL	8	Unmodified	_VVTSKGNL_					0	0	0		ENST00000560523.5_1_15:70964229-70991966:-|nuORF;UACA|p.L549Tfs*2|1|0.34|ENSG00000137831|chr15:70669040-70669041|-/TA|frameshift_variant;nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA	ENST00000560523.5_1_15:70964229-70991966:-|nuORF	ENST00000560523.5_1_15:70964229-70991966:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.89111328125	2	409.242535	816.470518	-0.39811	-0.00016292	0.094126	3.8521E-05	-0.30399	-0.0001244	409.24247071088854	13.221	0.36569	13.221	13.118	13.484	0					25	12	3	0	0	0	0.3439	1	344	344		2.8892	0	1	119900			55834	4085	32080	32081	68194	68194					0.05494113351721808
VVTSSIKVQ	9	Unmodified	_VVTSSIKVQ_					0	0	0		TAPT1|p.I414M|1|0.27|ENSG00000169762|chr4:16170724-16170724|G/C|missense_variant;nc|ENSG00000169762|Q6NXT6-2|TAPT1;ENSG00000169762|ENST00000405303|TAPT1	TAPT1|p.I414M|1|0.27|ENSG00000169762|chr4:16170724-16170724|G/C|missense_variant	TAPT1|p.I414M|1|0.27|ENSG00000169762|chr4:16170724-16170724|G/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2620849609375	2	480.78985	959.565146	0.51164	0.00024599	-0.57054	-0.00027431	-0.058902	-2.832E-05	480.7894632450974	21.108	0.31175	20.998	20.779	21.091	-0.11003					19	10	2	0	0	0	0.25202	1	2752	2752		10.824	7.2274	1	87386			55835	6385	32081	32082	68195	68195					0.0837462710304635
VVTTKYFKK	9	Unmodified	_VVTTKYFKK_					0	0	0		nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4;nc|ENSG00000168679|O15374-3|SLC16A4;SLC16A4|p.D170Cfs*16|1|0.27|ENSG00000168679|chr1:110380998-110381001|ATCT/-|frameshift_variant	nc|ENSG00000168679|O15374-4|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3370971679688	2	557.336967	1112.65938	0.35741	0.0001992	0.2728	0.00015204	0.63021	0.00035124	557.3369701801187	20.427	0.67518	20.427	20.207	20.883	0					62	23	4	0	0	0	0.0091837	3	2516	2516;2571;2623		80.676	44.17	1	445420			55836	6293	32082	32083	68196;68197;68198	68196					0.10755765925182459
VVTTKYFKK	9	Unmodified	_VVTTKYFKK_					0	0	0		nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4;nc|ENSG00000168679|O15374-3|SLC16A4;SLC16A4|p.D170Cfs*16|1|0.27|ENSG00000168679|chr1:110380998-110381001|ATCT/-|frameshift_variant	nc|ENSG00000168679|O15374-4|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3370971679688	2	557.336967	1112.65938	0.59505	0.00033165	-0.092376	-5.1485E-05	0.50268	0.00028016	557.3368252588381	20.651	0.65361	20.541	20.296	20.95	-0.11003					58	22	3	0	0	0	0.0045319	3	2623	2579;2623;2668		90.135	46.363	1	465200			55837	6293	32082	32083	68199;68200;68201	68200					0.10755765925182459
VVTTKYFKK	9	Unmodified	_VVTTKYFKK_					0	0	0		nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4;nc|ENSG00000168679|O15374-3|SLC16A4;SLC16A4|p.D170Cfs*16|1|0.27|ENSG00000168679|chr1:110380998-110381001|ATCT/-|frameshift_variant	nc|ENSG00000168679|O15374-4|SLC16A4	nc|ENSG00000168679|O15374-4|SLC16A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.33740234375	2	557.336967	1112.65938	0.54289	0.00030257	0.055734	3.1063E-05	0.59863	0.00033364	557.3369021760287	20.5	0.7473	20.447	20.229	20.977	-0.052912					62	26	4	0	0	0	0.003673	2	2546	2546;2598		96.936	47.381	1	463140			55838	6293	32082	32083	68202;68203	68202					0.10755765925182459
VVTTVASKYIP	11	Unmodified	_VVTTVASKYIP_					0	0	0			REV__ENSG00000150093|ENST00000302278|ITGB1	REV__ENSG00000150093|ENST00000302278|ITGB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3426513671875	2	589.344989	1176.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.049	1	11.981	11.481	12.481	-0.06806								0	0	0	0.38126	1	10	10		1.1933	0	1		+		55839	16489	32083	32084	68204	68204					0.09415427371413898
VVTVTQYVNVL	11	Unmodified	_VVTVTQYVNVL_					0	0	0		L1MB3_dup4631|chr5:1406633-1407012:-|1.1913231801046074|0.0169682324982985|6.13|489.0|3|1|sense;chr5:1406758-1409026|289|16.23|0.05|8.21|-|1|TE_info:L1MB3,L1MB3_dup4631,L1,LINE,acceptor,-,1406633,1406758|None,SLC6A3|2;chr5:1406288-1406666|364|54.69|0.18|8.22|-|1|TE_info:L1MB3,L1MB3_dup4631,L1,LINE,donor,-,1406666,1407012|SLC6A3,None|5	L1MB3_dup4631|chr5:1406633-1407012:-|1.1913231801046074|0.0169682324982985|6.13|489.0|3|1|sense	L1MB3_dup4631|chr5:1406633-1407012:-|1.1913231801046074|0.0169682324982985|6.13|489.0|3|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	412.2722473144531	3	412.239573	1233.69689	0.32793	0.00013519	-0.38487	-0.00015866	-0.056939	-2.3473E-05	412.2394107503166	40.319	0.57644	40.418	40.118	40.694	0.099407					42	20	3	0	0	0	0.33056	1	8566	8566		3.5927	0	1	392090			55840	167	32084	32085	68205	68205					0.08938812400128882
VVTWLYHP	8	Unmodified	_VVTWLYHP_					0	0	0		ENST00000556440.6_2_17:62502712-62502835:+|nuORF	ENST00000556440.6_2_17:62502712-62502835:+|nuORF	ENST00000556440.6_2_17:62502712-62502835:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.77374267578125	2	507.774003	1013.53345	0.34217	0.00017374	-0.96919	-0.00049213	-0.62702	-0.00031838	507.7734737265615	23.649	0.56452	23.61	23.283	23.848	-0.038927					50	19	3	0	0	0	0.43727	1	3528	3528		10.183	0	1	263930			55841	11857	32085	32086	68206	68206					0.027226791397424677
VVVAKPVGP	9	Unmodified	_VVVAKPVGP_					0	0	0			REV__nc|ENSG00000165816|Q5GFL6-2|VWA2	REV__nc|ENSG00000165816|Q5GFL6-2|VWA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.5751647949219	2	433.278921	864.543289	0.35401	0.00015339	-0.2452	-0.00010624	0.10881	4.7145E-05	433.2787738197698	33.431	0.80013	33.497	33.239	34.04	0.06636					45	28	2	0	0	0	0.21137	1	6448	6448		18.135	3.5533	1	186800	+		55842	17270	32086	32087	68207	68207					0.10559867145138924
VVVAMGLDR	9	Unmodified	_VVVAMGLDR_					0	0	0			REV__nc|ENSG00000185379|O75771-4|RAD51D	REV__nc|ENSG00000185379|O75771-4|RAD51D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.25299072265625	2	480.27077	958.526987	0.40644	0.0001952	3.7355	0.001794	4.1419	0.0019892	480.273615404078	32.254	0.45878	32.254	32.01	32.469	0					27	16	2	0	0	0	0.2451	1	6085	6085		15.847	4.7327	1	142090	+		55843	18376	32087	32088	68208	68208					0.04606417916727423
VVVAMGLDR	9	Unmodified	_VVVAMGLDR_					0	0	0			REV__nc|ENSG00000185379|O75771-4|RAD51D	REV__nc|ENSG00000185379|O75771-4|RAD51D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.2525329589844	2	480.27077	958.526987	0.56601	0.00027184	4.181	0.002008	4.747	0.0022799	480.27367840155625	32.104	0.38432	32.147	32.053	32.437	0.042366					22	13	2	0	0	0	0.23783	1	6086	6086		18.135	1.0221	1	142700	+		55844	18376	32087	32088	68209	68209					0.04606417916727423
VVVASTVQK	9	Unmodified	_VVVASTVQK_					0	0	0		nc|ENSG00000117139|Q9UGL1-2|KDM5B;ENSG00000117139|ENST00000367265|KDM5B;KDM5B|p.D895Vfs*26|1|0.35|ENSG00000117139|chr1:202741628-202741628|T/-|frameshift_variant	nc|ENSG00000117139|Q9UGL1-2|KDM5B	nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2455749511719	2	465.784567	929.554582	-0.02991	-1.3932E-05	0.12882	6.0005E-05	0.098914	4.6073E-05	465.78448273853655	32.881	0.42547	32.881	32.749	33.174	0					20	14	2	0	0	0	0.25431	1	6357	6357		9.3831	1.473	1	209410			55845	2777	32088	32089	68210	68210					0.08698644448622872
VVVDPIQSVK	10	Unmodified	_VVVDPIQSVK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.3240966796875	2	542.324057	1082.63356	0.43067	0.00023356	-0.33256	-0.00018036	0.098108	5.3206E-05	542.3238136275346	43.697	0.91743	43.697	43.388	44.306	0					98	33	4	0	0	0	0.22872	1	9608	9608		46.475	17.981	1	4929500			55846	2621	32089	32090	68211	68211					0.0955487168291711
VVVDPIQSVK	10	Unmodified	_VVVDPIQSVK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3242797851562	2	542.324057	1082.63356	0.58278	0.00031605	-0.21857	-0.00011854	0.36421	0.00019752	542.3238769870992	43.612	1.0439	43.69	43.373	44.417	0.077515					95	38	4	0	0	0	0.083104	2	9637	9588;9637		51.765	29.107	1	4956200			55847	2621	32089	32090	68212;68213	68213					0.0955487168291711
VVVDPIQSVK	10	Unmodified	_VVVDPIQSVK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3241577148438	2	542.324057	1082.63356	0.65478	0.0003551	-0.36304	-0.00019689	0.29173	0.00015821	542.3238004617551	43.587	1.2088	43.671	43.384	44.592	0.083992					97	44	4	0	0	0	0.09057	1	9603	9603		50.13	27.472	1	5240600			55848	2621	32089	32090	68214	68214					0.0955487168291711
VVVDRPSVI	9	Unmodified	_VVVDRPSVI_					0	0	0			REV__nc|ENSG00000006715|P49754-2|VPS41	REV__nc|ENSG00000006715|P49754-2|VPS41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.78289794921875	2	492.297842	982.581131	0.34608	0.00017037	0.47981	0.00023621	0.82589	0.00040658	492.2979944457661	26.257	0.65949	26.235	25.897	26.556	-0.022238					50	23	3	0	0	0	0.23784	1	4369	4369		19.257	0	1	304160	+		55849	13371	32090	32091	68215	68215					0.08914333339953373
VVVEQRLQ	8	Unmodified	_VVVEQRLQ_					0	0	0			REV__nc|ENSG00000127616|P51532-5|SMARCA4	REV__nc|ENSG00000127616|P51532-5|SMARCA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.78704833984375	2	485.787641	969.56073	0.37661	0.00018295	-0.057653	-2.8007E-05	0.31896	0.00015495	485.78745064599406	19.761	0.75102	19.705	19.283	20.034	-0.055693					44	26	3	0	0	0	0.46092	1	2392	2392		2.0598	0	1	96194	+		55850	15348	32091	32092	68216	68216					0.07473162680128098
VVVGSRNPK	9	Unmodified	_VVVGSRNPK_					0	0	0		nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3;ENSG00000115107|ENST00000393110|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.28765869140625	2	478.287808	954.561064	-0.15692	-7.5052E-05	-0.020145	-9.6351E-06	-0.17706	-8.4688E-05	478.2876851273705	13.807	0.39355	13.807	13.63	14.024	0					27	13	3	0	0	0	0.088443	1	540	540		39.95	16.801	1	115630			55851	2607	32092	32093	68217	68217					0.08196582399989438
VVVGSRNPK	9	Unmodified	_VVVGSRNPK_					0	0	0		nc|ENSG00000115107|Q658P3-4|STEAP3;nc|ENSG00000115107|Q658P3-3|STEAP3;nc|ENSG00000115107|Q658P3|STEAP3;ENSG00000115107|ENST00000393110|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	nc|ENSG00000115107|Q658P3-4|STEAP3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	478.287808	954.561064	-0.10447	-4.9969E-05	0.21239	0.00010159	0.10792	5.1617E-05	478.28782670727946	13.887	0.43165	13.821	13.575	14.007	-0.066068	0.015474	0.00014693	NaN	39.95	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127330			55852	2607	32092	32093							0.08196582399989438
VVVHVAGR	8	Unmodified	_VVVHVAGR_					0	0	0			REV__ENSG00000176919|ENST00000371634|C8G	REV__ENSG00000176919|ENST00000371634|C8G	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.5784606933594	2	418.758687	835.502821	0.15524	6.5009E-05	-0.2776	-0.00011625	-0.12236	-5.1239E-05	418.75843686040514	23.505	0.48185	23.466	23.255	23.737	-0.038927					25	16	2	0	0	0	0.34319	1	3495	3495		5.7604	0	1	79320	+		55853	17958	32093	32094	68218	68218					0.07848945545367769
VVVIEVIRFH	10	Unmodified	_VVVIEVIRFH_					0	0	0			REV__nc|ENSG00000168594|Q9UKF5-2|ADAM29	REV__nc|ENSG00000168594|Q9UKF5-2|ADAM29	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.5872497558594	3	404.248403	1209.72338	0.055896	2.2596E-05	0.68797	0.00027811	0.74386	0.00030071	404.58271375576373	31.983	0.97668	31.983	31.772	32.749	0					55	34	2	0	0	0	0.31746	1	5992	5992		9.544	5.9569	1	357420	+		55854	17468	32094	32095	68219	68219					0.12690546082126275
VVVIEVIRFH	10	Unmodified	_VVVIEVIRFH_					0	0	0			REV__nc|ENSG00000168594|Q9UKF5-2|ADAM29	REV__nc|ENSG00000168594|Q9UKF5-2|ADAM29	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.5871887207031	3	404.248403	1209.72338	0.040967	1.6561E-05	0.82709	0.00033435	0.86806	0.00035091	404.24893538722614	31.897	0.95476	31.939	31.737	32.691	0.042366					49	33	2	0	0	0	0.31746	1	5971	5971		9.544	2.4423	1	317240	+		55855	17468	32094	32095	68220	68220					0.12690546082126275
VVVKATSNI	9	Unmodified	_VVVKATSNI_					0	0	0			REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2452697753906	2	465.784567	929.554582	0.17886	8.3312E-05	-0.13404	-6.2436E-05	0.04482	2.0877E-05	465.78449312677776	32.84	0.49297	32.894	32.682	33.175	0.054375					25	17	2	0	0	0	0.23784	1	6319	6319		19.257	0	1	178390	+		55856	15594	32095	32096	68221	68221					0.08698644448600135
VVVKICKRKY	10	Unmodified	_VVVKICKRKY_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.57025146484375	3	412.593404	1234.75838	-0.12476	-5.1473E-05	2.8379	0.0011709	2.7131	0.0011194	412.59441595502255	13.318	0.31189	13.219	13.129	13.441	-0.09929					15	10	2	0	0	0	0.32165	1	401	401		0.69767	0.19171	1	14254			55857	6284	32096	32097	68222	68222					0.1503946561842895
VVVKICKRKY	10	Unmodified	_VVVKICKRKY_					0	0	0		ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	ENSG00000168564|ENST00000504169|CDKN2AIP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	412.593404	1234.75838	-0.37773	-0.00015585	3.285	0.0013554	2.9073	0.0011995	412.59464957522124	13.226	0.46247	13.226	12.874	13.336	0	0.0034474	0.00020752	NaN	0.69767	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16276			55858	6284	32096	32097							0.1503946561842895
VVVKLFSEK	9	Unmodified	_VVVKLFSEK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3135986328125	2	524.823692	1047.63283	0.21291	0.00011174	0.30829	0.0001618	0.5212	0.00027354	524.8239511120318	38.621	0.49648	38.621	38.347	38.844	0					31	17	2	0	0	0	0.19686	1	8040	8040		31.268	8.5321	1	350600			55859	5516	32097	32098	68223	68223					0.11092077033845271
VVVKLFSEK	9	Unmodified	_VVVKLFSEK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3136596679688	2	524.823692	1047.63283	0.5158	0.0002707	0.38453	0.00020181	0.90033	0.00047251	524.8237499018854	38.49	0.40903	38.581	38.399	38.808	0.090881					26	14	2	0	0	0	0.14646	1	8062	8062		43.772	9.3707	1	565790			55860	5516	32097	32098	68224	68224					0.11092077033845271
VVVLQGNRA	9	Unmodified	_VVVLQGNRA_					0	0	0		ENST00000515578.5_1_4:420284-429666:-|nuORF	ENST00000515578.5_1_4:420284-429666:-|nuORF	ENST00000515578.5_1_4:420284-429666:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.2876281738281	2	478.287808	954.561064	-0.10447	-4.9969E-05	0.21239	0.00010159	0.10792	5.1617E-05	478.28782670727946	13.887	0.43165	13.821	13.575	14.007	-0.066068					29	14	3	0	0	0	0.30623	1	573	573		7.9102	0.62092	1	127330			55861	11428	32098	32099	68225	68225					0.08196582399989438
VVVNALLR	8	Unmodified	_VVVNALLR_					0	0	0		nc|ENSG00000101417|Q9Y6I8-2|PXMP4;ENSG00000101417|ENST00000409299|PXMP4	nc|ENSG00000101417|Q9Y6I8-2|PXMP4	nc|ENSG00000101417|Q9Y6I8-2|PXMP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.90069580078125	2	442.28982	882.565087	-0.22577	-9.9856E-05	0.36095	0.00015964	0.13518	5.9788E-05	442.28995763722224	12.75	0.18083	12.682	12.61	12.791	-0.067496					7	5	2	0	0	0	0.34437	1	218	218		0.69038	0	1	12673			55862	1697	32099	32100	68226	68226					0.11910671893713243
VVVNALLR	8	Unmodified	_VVVNALLR_					0	0	0		nc|ENSG00000101417|Q9Y6I8-2|PXMP4;ENSG00000101417|ENST00000409299|PXMP4	nc|ENSG00000101417|Q9Y6I8-2|PXMP4	nc|ENSG00000101417|Q9Y6I8-2|PXMP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	442.28982	882.565087	-0.15908	-7.0358E-05	-0.1313	-5.8072E-05	-0.29038	-0.00012843	442.2895060453966	12.732	0.14263	12.732	12.641	12.783	0	0.024936	-0.00037906	NaN	0.69038	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11333			55863	1697	32099	32100							0.11910671893713243
VVVPPVGAK	9	Unmodified	_VVVPPVGAK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.57501220703125	2	433.278921	864.543289	0.084628	3.6667E-05	-0.15246	-6.6057E-05	-0.067831	-2.939E-05	433.2787919690604	33.659	1.1081	33.659	33.31	34.418	0					54	39	2	0	0	0	0.24311	1	6524	6524		16.942	2.3606	1	180810			55864	3239	32100	32101	68227	68227					0.10559867145127555
VVVPPVGAK	9	Unmodified	_VVVPPVGAK_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.5751647949219	2	433.278921	864.543289	-0.23093	-0.00010006	0.36266	0.00015713	0.13173	5.7076E-05	433.2789980856064	33.478	0.912	33.544	33.215	34.127	0.0667					54	32	2	0	0	0	0.22596	1	6510	6510		10.824	0	1	157620			55865	3239	32100	32101	68228	68228					0.10559867145127555
VVVPQSIKDLI	11	Unmodified	_VVVPQSIKDLI_					0	0	0			REV__ENSG00000162654|ENST00000355754|GBP4	REV__ENSG00000162654|ENST00000355754|GBP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.7939453125	2	605.873914	1209.73327	0.58234	0.00035282	-0.52425	-0.00031763	0.058085	3.5192E-05	605.8735650787853	62.694	0.44032	62.79	62.602	63.043	0.096504					24	15	2	0	0	0	0.32996	1	15526	15526		8.1555	0.54658	1	265560	+		55866	16996	32101	32102	68229	68229					0.13679689296827746
VVVPQSIKDLI	11	Unmodified	_VVVPQSIKDLI_					0	0	0			REV__ENSG00000162654|ENST00000355754|GBP4	REV__ENSG00000162654|ENST00000355754|GBP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	605.873914	1209.73327	0.51038	0.00030923	0.049169	2.979E-05	0.55955	0.00033902	605.8739246813797	62.824	0.3765	62.824	62.58	62.956	0	0.032219	0.00034164	NaN	8.1555	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258370	+		55867	16996	32101	32102							0.13679689296827746
VVVREFELNK	10	Unmodified	_VVVREFELNK_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.57147216796875	3	411.571434	1231.69247	0.0076023	3.1289E-06	0.32974	0.00013571	0.33734	0.00013884	411.57151132186016	32.785	0.86721	32.785	32.469	33.336	0					79	30	3	0	0	0	0.31396	2	6310	6310;6355		18.721	4.5031	1	954120	+		55868	17852	32102	32103	68230;68231	68230					0.0858934797722668
VVVREFELNK	10	Unmodified	_VVVREFELNK_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5715026855469	3	411.571434	1231.69247	0.15456	6.3613E-05	0.14399	5.9261E-05	0.29855	0.00012287	411.5714608656254	32.643	0.81746	32.697	32.441	33.258	0.054375					79	29	3	0	0	0	0.31396	1	6266	6266		18.721	3.7641	1	1002600	+		55869	17852	32102	32103	68232	68232					0.0858934797722668
VVVREFELNK	10	Unmodified	_VVVREFELNK_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.571533203125	3	411.571434	1231.69247	0.15456	6.3613E-05	0.14399	5.9261E-05	0.29855	0.00012287	411.5714608656254	32.643	0.81746	32.697	32.441	33.258	0.054375					79	29	3	0	0	0	0.31433	1	6215	6215		14.957	4.6419	1	1002600	+		55870	17852	32102	32103	68233	68233					0.0858934797722668
VVVREFELNK	10	Unmodified	_VVVREFELNK_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	411.571434	1231.69247	0.0076023	3.1289E-06	0.32974	0.00013571	0.33734	0.00013884	411.57151132186016	32.785	0.86721	32.785	32.469	33.336	0	0.043866	0.00012886	NaN	18.721	79	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	954120	+		55871	17852	32102	32103							0.0858934797722668
VVVSYQTKVLN	11	Unmodified	_VVVSYQTKVLN_					0	0	0		ENST00000482871.5_1_X:11778434-11778518:+|nuORF	ENST00000482871.5_1_X:11778434-11778518:+|nuORF	ENST00000482871.5_1_X:11778434-11778518:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.5610656738281	3	417.243206	1248.70779	0.08759	3.6546E-05	0.21675	9.0437E-05	0.30434	0.00012698	417.2432307275676	35.619	0.63618	35.705	35.504	36.14	0.08625					66	22	4	0	0	0	0.33056	1	7094	7094		8.7518	2.1283	1	801590			55872	11054	32103	32104	68234	68234					0.09338214774425069
VVVTEITL	8	Unmodified	_VVVTEITL_					0	0	0		ENST00000460311.1_1_2:150443601-150444208:-|nuORF	ENST00000460311.1_1_2:150443601-150444208:-|nuORF	ENST00000460311.1_1_2:150443601-150444208:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.257568359375	2	437.268219	872.521884	0.17391	7.6047E-05	-0.28362	-0.00012402	-0.1097	-4.7969E-05	437.26795160973495	87.051	0.51089	87.051	86.728	87.239	0					36	19	2	0	0	0	0.43302	1	22967	22967		11.64	0	1	573550			55873	10725	32104	32105	68235	68235					0.08052437325750361
VVVVNPQTK	9	Unmodified	_VVVVNPQTK_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.2586975097656	2	492.297842	982.581131	0.226	0.00011126	0.93196	0.0004588	1.158	0.00057006	492.2981863864319	26.249	0.60357	26.249	25.925	26.528	0					57	20	4	0	0	0	0.090256	1	4260	4260		57.722	27.085	1	272580			55874	7015	32105	32106	68236	68236					0.08914333339942004
VVVVNPQTK	9	Unmodified	_VVVVNPQTK_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.78271484375	2	492.297842	982.581131	0.21454	0.00010562	0.70559	0.00034736	0.92013	0.00045298	492.2979638530347	26.265	0.5614	26.227	25.957	26.519	-0.038671					59	19	4	0	0	0	0.24289	1	4377	4377		8.7454	0	1	362260			55875	7015	32105	32106	68237	68237					0.08914333339942004
VVVVNTSI	8	Unmodified	_VVVVNTSI_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.2242736816406	2	415.752736	829.490919	-0.059165	-2.4598E-05	0.31464	0.00013081	0.25548	0.00010622	415.75274913835614	32.923	0.79345	32.923	32.633	33.426	0					55	27	4	0	0	0	0.32435	1	6364	6364		16.942	0	1	868920			55876	7707	32106	32107	68238	68238					0.06935284011524345
VVVVVDQHGSG	11	Unmodified	_VVVVVDQHGSG_					0	0	0		ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.27734375	2	548.293288	1094.57202	0.10339	5.6688E-05	4.076	0.0022349	4.1794	0.0022916	548.2965790107548	14.069	1.17	14.069	13.902	15.072	0					138	40	6	0	0	0	0.40332	1	589	589		10.8	0.72558	1	27495000			55877	8237	32107	32108	68239	68239					0.028519399836113735
VVVVYGEPPLQ	11	Unmodified	_VVVVYGEPPLQ_					0	0	0			REV__nc|ENSG00000120899|Q14289-2|PTK2B	REV__nc|ENSG00000120899|Q14289-2|PTK2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3240966796875	2	600.337164	1198.65977	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.88	1	105.88	105.38	106.38	0.0031738								0	0	0	0.36517	1	28057	28057		4.897	0.56777	1		+		55878	15100	32108	32109	68240	68240					0.06839140854367542
VVWGHRESVR	10	Unmodified	_VVWGHRESVR_					0	0	0			REV__nc|ENSG00000198838|Q15413-3|RYR3	REV__nc|ENSG00000198838|Q15413-3|RYR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.53131103515625	3	408.891389	1223.65234	-0.3021	-0.00012353	0.31906	0.00013046	0.016964	6.9364E-06	408.89143659936104	13.95	0.60478	13.884	13.716	14.32	-0.066068					44	20	4	0	0	0	0.32122	1	699	699		2.086	1.3095	1	274480	+		55879	18873	32109	32110	68241	68241					0.049458460973028195
VVWGHRESVR	10	Unmodified	_VVWGHRESVR_					0	0	0			REV__nc|ENSG00000198838|Q15413-3|RYR3	REV__nc|ENSG00000198838|Q15413-3|RYR3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	408.891389	1223.65234	-0.38606	-0.00015786	0.25097	0.00010262	-0.13509	-5.5235E-05	408.89147288028096	13.844	0.47731	13.844	13.687	14.164	0	-0.02104	-1.9357E-05	NaN	2.086	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203310	+		55880	18873	32109	32110							0.049458460973028195
VVWLVLFLFF	10	Unmodified	_VVWLVLFLFF_					0	0	0		ENST00000519245.1_1_6:112457126-112460429:-|nuORF	ENST00000519245.1_1_6:112457126-112460429:-|nuORF	ENST00000519245.1_1_6:112457126-112460429:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.385498046875	2	641.883553	1281.75255	0.42806	0.00027476	-1.0991	-0.00070551	-0.67106	-0.00043074	641.8827522395377	102.34	0.57393	102.33	101.91	102.48	-0.0033722					134	84	2	0	0	0	0.41642	1	27233	27233		0.45834	0	1	154850			55881	11453	32110	32111	68242	68242					0.12294690378371342
VVWNRRKRL	9	Unmodified	_VVWNRRKRL_					0	0	0		ENST00000451080.5_1_2:202672326-202741280:+|nuORF	ENST00000451080.5_1_2:202672326-202741280:+|nuORF	ENST00000451080.5_1_2:202672326-202741280:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.89111328125	3	409.591274	1225.75199	-0.39395	-0.00016136	-1.0551	-0.00043214	-1.449	-0.0005935	409.59074167728505	13.349	0.36756	13.349	13.09	13.457	0					20	12	2	0	0	0	0.259	1	344	344		5.2969	1.7098	1	43340			55882	10646	32111	32112	68243	68243					0.1481470850194455
VVWPAVLSI	9	Unmodified	_VVWPAVLSI_					0	0	0			REV__ENSG00000165370|ENST00000651716|GPR101	REV__ENSG00000165370|ENST00000651716|GPR101	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.310302734375	2	492.299853	982.585153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.417	1	48.417	47.917	48.917	0								0	0	0	0.24311	1	11077	11077		8.5933	0	1		+		55883	17231	32112	32113	68244	68244					0.09316422833660454
VVYAPCYA	8	Unmodified	_VVYAPCYA_					0	0	0			REV__ENSG00000275395|ENST00000616721|FCGBP	REV__ENSG00000275395|ENST00000616721|FCGBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	442.7510986328125	2	443.212389	884.410226	0.2774	0.00012295	1.7232	0.00076374	2.0006	0.00088669	443.2122596508506	19.651	0.25629	19.595	19.395	19.652	-0.055693					11	8	2	0	0	0	0.34297	1	2253	2253		6.3541	3.4649	1	12806	+		55884	19330	32113	32114	68245	68245					-0.03660320303038134
VVYIVPEISIN	11	Unmodified	_VVYIVPEISIN_					0	0	0			REV__ENSG00000011201|ENST00000262648|ANOS1	REV__ENSG00000011201|ENST00000262648|ANOS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.90826416015625	3	415.907823	1244.70164	0.49492	0.00020584	0.35178	0.00014631	0.8467	0.00035215	415.9079258741227	33.51	1.8274	33.576	32.489	34.317	0.06636					173	65	3	0	0	0	0.37965	1	6407	6407		7.4771	7.4771	1	1278500	+		55885	13426	32114	32115	68246	68246					0.08907696542905796
VVYLHHELP	9	Unmodified	_VVYLHHELP_					0	0	0			REV__ENST00000597145.5_1_19:4685559-4714096:-|nuORF	REV__ENST00000597145.5_1_19:4685559-4714096:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8017578125	2	553.803291	1105.59203	0.054094	2.9957E-05	-2.5446	-0.0014092	-2.4905	-0.0013793	553.8019895622722	15.274	0.51715	15.274	14.981	15.498	0					27	17	2	0	0	0	0.34536	1	992	992		2.0598	0	1	51730	+		55886	22605	32115	32116	68247	68247					0.0434573571421879
VVYLHHELP	9	Unmodified	_VVYLHHELP_					0	0	0			REV__ENST00000597145.5_1_19:4685559-4714096:-|nuORF	REV__ENST00000597145.5_1_19:4685559-4714096:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3406372070312	2	553.803291	1105.59203	0.054094	2.9957E-05	-2.5446	-0.0014092	-2.4905	-0.0013793	553.8019895622722	15.274	0.51715	15.274	14.981	15.498	0					27	17	2	0	0	0	0.26145	1	1003	1003		2.0598	0	1	51730	+		55887	22605	32115	32116	68248	68248					0.0434573571421879
VVYLHHELP	9	Unmodified	_VVYLHHELP_					0	0	0			REV__ENST00000597145.5_1_19:4685559-4714096:-|nuORF	REV__ENST00000597145.5_1_19:4685559-4714096:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	553.803291	1105.59203	0.015861	8.7836E-06	-2.7992	-0.0015502	-2.7833	-0.0015414	553.8016128510362	15.399	0.35721	15.335	15.1	15.457	-0.064414	0.037532	0.00066204	NaN	2.0598	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49779	+		55888	22605	32115	32116							0.0434573571421879
VVYLHRMM	8	Unmodified	_VVYLHRMM_					0	0	0			REV__ENST00000508325.5_1_5:68860950-68862940:+|nuORF	REV__ENST00000508325.5_1_5:68860950-68862940:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7747192382812	2	524.775165	1047.53578	0.53147	0.0002789	-0.3157	-0.00016567	0.21578	0.00011323	524.7748640030104	16.777	1.1526	16.714	16.495	17.647	-0.062532					103	40	4	0	0	0	0.39956	1	1501	1501		19.439	1.9964	1	662380	+		55889	16304	32116	32117	68249	68249					0.01391068281554908
VVYQYWNTK	9	Unmodified	_VVYQYWNTK_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3304443359375	2	600.806031	1199.59751	0.47275	0.00028403	0.57352	0.00034457	1.0463	0.0006286	600.806662532523	44.182	0.47684	44.182	43.959	44.436	0					30	17	2	0	0	0	0.067514	1	9771	9771		61.09	41.833	1	503630			55890	3320	32117	32118	68250	68250					0.00569414506026078
VVYQYWNTK	9	Unmodified	_VVYQYWNTK_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3306274414062	2	600.806031	1199.59751	0.50453	0.00030313	1.3741	0.00082558	1.8786	0.0011287	600.806897530755	43.832	0.50121	43.91	43.654	44.155	0.077515					33	18	3	0	0	0	0.19208	1	9663	9663		21.59	7.6841	1	546550			55891	3320	32117	32118	68251	68251					0.00569414506026078
VVYQYWNTK	9	Unmodified	_VVYQYWNTK_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3306884765625	2	600.806031	1199.59751	0.39146	0.00023519	1.096	0.00065845	1.4874	0.00089364	600.8068246496656	43.82	0.39181	43.904	43.684	44.075	0.083996					26	14	2	0	0	0	0.089483	1	9652	9652		51.415	42.032	1	617030			55892	3320	32117	32118	68252	68252					0.00569414506026078
VVYRDVAITTL	11	Unmodified	_VVYRDVAITTL_					0	0	0			REV__ENSG00000119973|ENST00000239032|PRLHR	REV__ENSG00000119973|ENST00000239032|PRLHR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.24334716796875	3	417.243206	1248.70779	0.25985	0.00010842	0.06187	2.5815E-05	0.32172	0.00013424	417.2431752484918	35.659	0.52133	35.741	35.54	36.062	0.082359					54	18	4	0	0	0	0.3287	1	7156	7156		8.7518	1.3227	1	795740	+		55893	15070	32118	32119	68253	68253					0.09338214774402331
VVYSGLENIKK	11	Unmodified	_VVYSGLENIKK_					0	0	0		ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.2436218261719	3	417.243206	1248.70779	0.084976	3.5455E-05	-0.14406	-6.0106E-05	-0.059081	-2.4651E-05	417.2432518373112	35.808	0.59339	35.808	35.575	36.168	0					60	21	4	0	0	0	0.32531	1	7205	7205		18.34	6.1121	1	680270			55894	5077	32119	32120	68254	68254					0.09338214774402331
VVYSSFSSF	9	Unmodified	_VVYSSFSSF_					0	0	0		ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	ENST00000472820.1_1_9:139568206-139571631:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2786865234375	2	511.745108	1021.47566	0.33209	0.00016995	-0.77022	-0.00039416	-0.43813	-0.00022421	511.7445406043241	62.78	0.55155	62.876	62.57	63.122	0.095722					28	19	2	0	0	0	0.21137	1	15442	15442		24.674	6.5389	1	309710			55895	6376	32120	32121	68255	68255					-0.03421627576312858
VVYTSHLQLK	10	Unmodified	_VVYTSHLQLK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENST00000522286.5_1_2:113158797-113161561:-|nuORF;RGPD3|p.R564Kfs*28|1|0.32|ENSG00000153165|chr2:106436192-106436193|-/A|frameshift_variant;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.3421020507812	2	594.342781	1186.67101	-0.92169	-0.0005478	0.61524	0.00036566	-0.30645	-0.00018214	594.3428717046849	34.942	0.50208	34.942	34.725	35.227	0					43	17	3	0	0	0	0.026238	1	6956	6956		64.927	45.565	1	255150			55896	5064;484;7523	32121	32122	68256	68256					0.08513962948518383
VVYTSHLQLK	10	Unmodified	_VVYTSHLQLK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENST00000522286.5_1_2:113158797-113161561:-|nuORF;RGPD3|p.R564Kfs*28|1|0.32|ENSG00000153165|chr2:106436192-106436193|-/A|frameshift_variant;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.34228515625	2	594.342781	1186.67101	-1.0817	-0.00064292	0.49305	0.00029304	-0.58868	-0.00034988	594.3427918463422	34.852	0.57601	34.928	34.685	35.261	0.075306					45	20	3	0	0	0	0.018653	1	6895	6895		73.196	53.834	1	302020			55897	5064;484;7523	32121	32122	68257	68257					0.08513962948518383
VVYTSHLQLK	10	Unmodified	_VVYTSHLQLK_					0	0	0		ENSG00000153201|ENST00000283195|RANBP2;RANBP2|p.T2182Hfs*3|1|0.08|ENSG00000153201|chr2:108767080-108767080|A/-|frameshift_variant;nc|ENSG00000183054|Q99666-2|RGPD5;ENST00000522286.5_1_2:113158797-113161561:-|nuORF;RGPD3|p.R564Kfs*28|1|0.32|ENSG00000153165|chr2:106436192-106436193|-/A|frameshift_variant;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000196862|ENST00000408999|RGPD4	ENSG00000153201|ENST00000283195|RANBP2;ENSG00000183054|ENST00000329516|RGPD6;nc|ENSG00000187627|P0DJD0|RGPD1	ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.3421630859375	2	594.342781	1186.67101	-0.52202	-0.00031026	0.17781	0.00010568	-0.34421	-0.00020458	594.3424721951562	34.807	0.55109	34.885	34.644	35.195	0.077377					45	19	3	0	0	0	0.022191	1	6884	6884		69.338	46.68	1	310830			55898	5064;484;7523	32121	32122	68258	68258					0.08513962948518383
VVYYSVDFSF	10	Unmodified	_VVYYSVDFSF_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5318298339844	3	409.197374	1224.57029	-0.2396	-9.8042E-05	-1.3064	-0.00053459	-1.546	-0.00063264	409.53164282862673	14.267	0.86651	14.162	13.845	14.711	-0.10466					70	29	5	0	0	0	0.39745	1	697	697		1.9064	0.45126	1	159490			55899	5188	32122	32123	68259	68259					-0.03301113825023094
VWDFQIFRR	9	Unmodified	_VWDFQIFRR_					0	0	0		ENST00000609375.1_2_20:10394575-10401327:-|nuORF	ENST00000609375.1_2_20:10394575-10401327:-|nuORF	ENST00000609375.1_2_20:10394575-10401327:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.2406005859375	3	422.896252	1265.66693	-0.17224	-7.2841E-05	3.4836	0.0014732	3.3113	0.0014003	422.8975388198729	26.325	0.61738	26.286	25.957	26.575	-0.038671					27	21	2	0	0	0	0.25612	1	4288	4288		8.1555	1.0538	1	77070			55900	12324	32123	32124	68260	68260					0.04471918245440065
VWDRKHRRL	9	Unmodified	_VWDRKHRRL_					0	0	0			REV__nc|ENSG00000062038|P22223-2|CDH3	REV__nc|ENSG00000062038|P22223-2|CDH3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3692016601562	2	633.37053	1264.72651	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.71	1	114.73	114.23	115.23	0.016708								0	0	0	0.2672	1	29826	29826		0.52476	0.066424	1		+		55901	13628	32124	32125	68261	68261					0.10473233979519136
VWEEMNVFSL	10	Unmodified	_VWEEMNVFSL_					0	0	0		ENST00000395878.7_1_16:23585535-23585652:+|nuORF	ENST00000395878.7_1_16:23585535-23585652:+|nuORF	ENST00000395878.7_1_16:23585535-23585652:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.8255004882812	2	627.297181	1252.57981	0.19942	0.00012509	-0.16275	-0.0001021	0.036661	2.2997E-05	627.2969182282537	19.439	0.27662	19.439	19.35	19.627	0					13	9	2	0	0	0	0.32132	1	2224	2224		1.4819	0	1	25622			55902	10100	32125	32126	68262	68262					-0.0363766881112042
VWEVFLYKFSH	11	Unmodified	_VWEVFLYKFSH_					0	0	0		ENST00000510751.5_1_5:169015420-169022772:+|nuORF	ENST00000510751.5_1_5:169015420-169022772:+|nuORF	ENST00000510751.5_1_5:169015420-169022772:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.234130859375	3	485.587084	1453.73942	0.12204	5.9261E-05	-0.87252	-0.00042368	-0.75048	-0.00036442	485.92127333415567	25.476	0.11959	25.476	25.384	25.504	0					5	3	2	0	0	0	0.33346	1	4045	4045		0.50596	0	1	16819			55903	11376	32126	32127	68263	68263					0.030702075283670638
VWFRGIGSPV	10	Unmodified	_VWFRGIGSPV_					0	0	0		ENST00000481123.1_1_7:139025345-139030484:+|nuORF	ENST00000481123.1_1_7:139025345-139030484:+|nuORF	ENST00000481123.1_1_7:139025345-139030484:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.82470703125	2	559.311284	1116.60801	0.15148	8.4727E-05	-0.57019	-0.00031892	-0.41871	-0.00023419	559.3110827241732	18.426	0.65954	18.308	17.896	18.556	-0.11739					31	22	2	0	0	0	0.32033	1	1969	1969		3.5965	2.995	1	46250			55904	11022	32127	32128	68264	68264					0.05437441951130495
VWGAPLLW	8	Unmodified	_VWGAPLLW_					0	0	0		ENST00000308027.6_1_17:6939535-6939835:+|nuORF	ENST00000308027.6_1_17:6939535-6939835:+|nuORF	ENST00000308027.6_1_17:6939535-6939835:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.267333984375	2	471.265813	940.517074	-0.15708	-7.4025E-05	2.6722	0.0012593	2.5151	0.0011853	471.2670860689209	14.336	0.48708	14.231	14.105	14.592	-0.10466					22	16	2	0	0	0	0.46461	1	699	699		0.79363	0	1	88547			55905	9282	32128	32129	68265	68265					0.044435979736590525
VWGAPLLW	8	Unmodified	_VWGAPLLW_					0	0	0		ENST00000308027.6_1_17:6939535-6939835:+|nuORF	ENST00000308027.6_1_17:6939535-6939835:+|nuORF	ENST00000308027.6_1_17:6939535-6939835:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	471.265813	940.517074	-0.23366	-0.00011012	2.6715	0.001259	2.4378	0.0011489	471.26675657847545	14.211	0.39226	14.211	14.086	14.478	0	-0.0024838	0.00017677	NaN	0.79363	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72307			55906	9282	32128	32129							0.044435979736590525
VWGAPLLW	8	Unmodified	_VWGAPLLW_					0	0	0		ENST00000308027.6_1_17:6939535-6939835:+|nuORF	ENST00000308027.6_1_17:6939535-6939835:+|nuORF	ENST00000308027.6_1_17:6939535-6939835:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	471.265813	940.517074	-0.15708	-7.4025E-05	2.6722	0.0012593	2.5151	0.0011853	471.2670860689209	14.336	0.48708	14.231	14.105	14.592	-0.10466	0.017034	0.00017741	NaN	0.79363	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88547			55907	9282	32128	32129							0.044435979736590525
VWGAPLLW	8	Unmodified	_VWGAPLLW_					0	0	0		ENST00000308027.6_1_17:6939535-6939835:+|nuORF	ENST00000308027.6_1_17:6939535-6939835:+|nuORF	ENST00000308027.6_1_17:6939535-6939835:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	471.265813	940.517074	-0.11346	-5.3471E-05	2.1538	0.001015	2.0404	0.00096156	471.26664763701325	14.265	0.3858	14.199	14.124	14.51	-0.066068	-0.01455	-0.00031113	NaN	0.79363	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53268			55908	9282	32128	32129							0.044435979736590525
VWHSKWYDAK	10	Unmodified	_VWHSKWYDAK_					0	0	0		nc|ENSG00000149294|P13591-5|NCAM1;nc|ENSG00000149294|P13591-4|NCAM1;nc|ENSG00000149294|P13591-3|NCAM1;nc|ENSG00000149294|P13591-1|NCAM1;ENSG00000149294|ENST00000316851|NCAM1	nc|ENSG00000149294|P13591-5|NCAM1	nc|ENSG00000149294|P13591-5|NCAM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.2341613769531	3	440.555895	1318.64586	0.10682	4.7059E-05	2.6633	0.0011733	2.7701	0.0012204	440.8913407386957	17.171	0.39276	17.171	16.925	17.318	0					21	13	2	0	0	0	0.32137	1	1565	1565		1.7423	0.14999	1	55874			55909	4858	32129	32130	68266	68266					-0.0007209185407646146
VWIALLLWAPG	11	Unmodified	_VWIALLLWAPG_					0	0	0			REV__nc|ENSG00000065485|Q14554-2|PDIA5	REV__nc|ENSG00000065485|Q14554-2|PDIA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.58203125	3	413.581382	1237.72232	0.38402	0.00015882	0.52281	0.00021622	0.90683	0.00037505	413.58176939965705	86.111	4.0629	86.196	83.932	87.995	0.084251					387	170	3	0	0	0	0.47429	1	22556	22556		0.50596	0.50596	1	985690	+		55910	13665	32130	32131	68267	68267					0.11296331713219843
VWIKFHLE	8	Unmodified	_VWIKFHLE_					0	0	0			REV__ENST00000429350.5_1_22:30414646-30446524:-|nuORF	REV__ENST00000429350.5_1_22:30414646-30446524:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.1655883789062	2	536.302927	1070.5913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.884	1	25.862	25.362	26.362	-0.022238								0	0	0	0.37183	1	4185	4185		4.756	0	1		+		55911	20929	32131	32132	68268	68268					0.058829410651469516
VWIQAQQL	8	Unmodified	_VWIQAQQL_					0	0	0		ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000173757|ENST00000293328|STAT5B	ENST00000468312.1_1_17:40370167-40384145:-|nuORF	ENST00000468312.1_1_17:40370167-40384145:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.2926330566406	2	493.276909	984.539266	0.0092899	4.5825E-06	-3.2754	-0.0016157	-3.2661	-0.0016111	493.2751858171253	13.879	0.56267	13.774	13.46	14.023	-0.10466					44	19	3	0	0	0	0.344	1	532	532		2.5775	0	1	68436			55912	6748	32132	32133	68269	68269					0.04637777651419128
VWKKYQKK	8	Unmodified	_VWKKYQKK_					0	0	0			REV__ENSG00000115267|ENST00000649979|IFIH1	REV__ENSG00000115267|ENST00000649979|IFIH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.26123046875	2	554.337301	1106.66005	0.13762	7.6289E-05	-3.3426	-0.0018529	-3.205	-0.0017766	554.3351651150979	16.966	0.39073	16.851	16.749	17.14	-0.11485					18	13	2	0	0	0	0.34353	1	1475	1475		4.756	0	1	48060	+		55913	14870	32133	32134	68270	68270					0.11098605364873038
VWKVRVDLP	9	Unmodified	_VWKVRVDLP_					0	0	0		ENST00000486283.1_1_7:129497270-129520783:-|nuORF;nc|ENSG00000186591|P62256-2|UBE2H;ENSG00000186591|ENST00000355621|UBE2H	ENST00000486283.1_1_7:129497270-129520783:-|nuORF	ENST00000486283.1_1_7:129497270-129520783:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3328857421875	2	556.334759	1110.65496	0.24427	0.0001359	-4.4144	-0.0024559	-4.1702	-0.00232	556.332694691663	35.456	0.68296	35.532	35.21	35.893	0.075306					56	24	3	0	0	0	0.18803	1	7129	7129		25.399	1.3787	1	583370			55914	7629	32134	32135	68271	68271					0.10406301502280257
VWLLYNAFNL	10	Unmodified	_VWLLYNAFNL_					0	0	0			REV__nc|ENSG00000167904|Q96MH6-2|TMEM68	REV__nc|ENSG00000167904|Q96MH6-2|TMEM68	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.8402709960938	2	626.839874	1251.66519	0.63782	0.00039981	-0.18127	-0.00011363	0.45654	0.00028618	626.8396611136569	77.576	0.49352	77.545	77.346	77.84	-0.031334					44	17	3	0	0	0	0.37133	1	20013	20013		8.7454	1.6437	1	544480	+		55915	17420	32135	32136	68272	68272					0.04942864436839045
VWMRSPLSTF	10	Oxidation (M)	_VWM(Oxidation (M))RSPLSTF_		VWM(1)RSPLSTF		VWM(100)RSPLSTF	0	0	1		chr15:60364523-60370591|123|37.85|0.76|5.64|-|0|ANXA2,None|1;ENST00000559725.5_1_15:60656692-60682421:-|nuORF;ENST00000558985.5_1_15:60656692-60690187:-|nuORF	chr15:60364523-60370591|123|37.85|0.76|5.64|-|0|ANXA2,None|1	chr15:60364523-60370591|123|37.85|0.76|5.64|-|0|ANXA2,None|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.3135375976562	2	620.313166	1238.61178	0.54103	0.00033561	-0.094196	-5.8431E-05	0.44683	0.00027718	620.3130720943725	55.71	0.74898	55.71	55.325	56.074	0					44	26	2	0	0	0	0.0034473	3	13318	13262;13318;13388		100.71	58.869	1	1318400			55916	139	32136	32137	68273;68274;68275	68274		11			0.0020174366268292943
VWMRSPLSTF	10	Oxidation (M)	_VWM(Oxidation (M))RSPLSTF_		VWM(1)RSPLSTF		VWM(110)RSPLSTF	0	0	1		chr15:60364523-60370591|123|37.85|0.76|5.64|-|0|ANXA2,None|1;ENST00000559725.5_1_15:60656692-60682421:-|nuORF;ENST00000558985.5_1_15:60656692-60690187:-|nuORF	chr15:60364523-60370591|123|37.85|0.76|5.64|-|0|ANXA2,None|1	chr15:60364523-60370591|123|37.85|0.76|5.64|-|0|ANXA2,None|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.3131103515625	2	620.313166	1238.61178	0.4089	0.00025365	-0.063461	-3.9366E-05	0.34544	0.00021428	620.3130287546526	55.695	0.68694	55.766	55.422	56.109	0.070885					44	24	2	0	0	0	0.0014715	2	13289	13289;13336		114.5	64.564	1	1264500			55917	139	32136	32137	68276;68277	68276		11			0.0020174366268292943
VWMRSPLSTF	10	Oxidation (M)	_VWM(Oxidation (M))RSPLSTF_		VWM(1)RSPLSTF		VWM(88)RSPLSTF	0	0	1		chr15:60364523-60370591|123|37.85|0.76|5.64|-|0|ANXA2,None|1;ENST00000559725.5_1_15:60656692-60682421:-|nuORF;ENST00000558985.5_1_15:60656692-60690187:-|nuORF	chr15:60364523-60370591|123|37.85|0.76|5.64|-|0|ANXA2,None|1	chr15:60364523-60370591|123|37.85|0.76|5.64|-|0|ANXA2,None|1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	620.313232421875	2	620.313166	1238.61178	0.57657	0.00035765	-0.18757	-0.00011635	0.389	0.0002413	620.3129627085918	55.881	0.65079	55.862	55.536	56.187	-0.019077					59	23	3	0	0	0	0.0055648	2	13389	13336;13389		88.364	59.282	1	1387300			55918	139	32136	32137	68278;68279	68279		11			0.0020174366268292943
VWPVYLILIR	10	Unmodified	_VWPVYLILIR_					0	0	0			REV__ENST00000469416.1_1_1:40916330-40916492:+|nuORF	REV__ENST00000469416.1_1_1:40916330-40916492:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.3983154296875	2	636.397359	1270.78016	0.76515	0.00048694	0.72893	0.00046389	1.4941	0.00095083	636.3973845274071	91.741	1.0714	91.742	91.437	92.509	0.00046539					154	73	3	0	0	0	0.40992	1	24526	24526		1.6526	1.1279	1	877970	+		55919	21339	32137	32138	68280	68280					0.15560593638656428
VWPVYLILIR	10	Unmodified	_VWPVYLILIR_					0	0	0			REV__ENST00000469416.1_1_1:40916330-40916492:+|nuORF	REV__ENST00000469416.1_1_1:40916330-40916492:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	636.397359	1270.78016	0.3065	0.00019505	0.78352	0.00049863	1.09	0.00069368	636.3972545319872	91.778	0.61972	91.778	91.518	92.138	0	0.028221	2.2254E-05	NaN	1.6526	84	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	474690	+		55920	21339	32137	32138							0.15560593638656428
VWPVYLILIR	10	Unmodified	_VWPVYLILIR_					0	0	0			REV__ENST00000469416.1_1_1:40916330-40916492:+|nuORF	REV__ENST00000469416.1_1_1:40916330-40916492:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	636.397359	1270.78016	0.54955	0.00034973	0.80301	0.00051104	1.3526	0.00086077	636.3973972562125	91.638	0.771	91.728	91.444	92.215	0.090668	-0.020894	4.7065E-05	NaN	1.6526	127	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	582760	+		55921	21339	32137	32138							0.15560593638656428
VWPVYLILIR	10	Unmodified	_VWPVYLILIR_					0	0	0			REV__ENST00000469416.1_1_1:40916330-40916492:+|nuORF	REV__ENST00000469416.1_1_1:40916330-40916492:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	636.397359	1270.78016	0.76515	0.00048694	0.72893	0.00046389	1.4941	0.00095083	636.3973845274071	91.741	1.0714	91.742	91.437	92.509	0.00046539	-0.0073266	-4.7225E-05	NaN	1.6526	154	73	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	877970	+		55922	21339	32137	32138							0.15560593638656428
VWQDSHMF	8	Unmodified	_VWQDSHMF_					0	0	0		ENST00000504117.1_1_5:93752768-93812878:-|nuORF;nc|ENSG00000185261|Q8IV33-3|KIAA0825;nc|ENSG00000185261|Q8IV33|KIAA0825;ENSG00000185261|ENST00000682413|KIAA0825	ENST00000504117.1_1_5:93752768-93812878:-|nuORF	ENST00000504117.1_1_5:93752768-93812878:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7035522460938	2	525.229102	1048.44365	0.8337	0.00043789	1.2313	0.00064669	2.065	0.0010846	525.2299372555628	78.903	1.02	78.873	78.327	79.347	-0.030434					50	41	2	0	0	0	0.3439	1	20445	20445		2.8892	0	1	115090			55923	7517	32138	32139	68281	68281					-0.07863318531121877
VWRFHLRL	8	Unmodified	_VWRFHLRL_					0	0	0		ENST00000359513.8_1_11:46667456-46670726:+|nuORF	ENST00000359513.8_1_11:46667456-46670726:+|nuORF	ENST00000359513.8_1_11:46667456-46670726:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.835205078125	2	563.83526	1125.65597	0.0065194	3.6759E-06	-0.61691	-0.00034783	-0.61039	-0.00034416	563.8349221463283	13.509	0.86775	13.409	13.16	14.028	-0.099291					75	30	4	0	0	0	0.4419	2	434	434;480		8.5933	0	1	369120			55924	9665	32139	32140	68282;68283	68282					0.09816560661829499
VWRFHLRL	8	Unmodified	_VWRFHLRL_					0	0	0		ENST00000359513.8_1_11:46667456-46670726:+|nuORF	ENST00000359513.8_1_11:46667456-46670726:+|nuORF	ENST00000359513.8_1_11:46667456-46670726:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.8349609375	2	563.83526	1125.65597	-0.116	-6.5406E-05	-0.38008	-0.0002143	-0.49608	-0.00027971	563.8349678870013	13.52	0.84655	13.452	13.189	14.035	-0.067495					74	29	4	0	0	0	0.4419	1	485	485		8.5933	0	1	371400			55925	9665	32139	32140	68284	68284					0.09816560661829499
VWRPRSRR	8	Unmodified	_VWRPRSRR_					0	0	0		ENST00000354336.7_1_22:21271769-21272156:+|nuORF	ENST00000354336.7_1_22:21271769-21272156:+|nuORF	ENST00000354336.7_1_22:21271769-21272156:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3133544921875	2	556.83104	1111.64753	0.24927	0.0001388	-2.6463	-0.0014736	-2.3971	-0.0013348	556.8290060049342	24.17	0.20115	24.131	23.965	24.166	-0.038927					9	6	2	0	0	0	0.46022	1	3670	3670		2.3027	0.24298	1	22914			55926	9593	32140	32141	68285	68285					0.09617006745224899
VWRPYLDLYFK	11	Unmodified	_VWRPYLDLYFK_					0	0	0			REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.67144775390625	3	500.606367	1498.79727	0.40565	0.00020307	0.87402	0.00043754	1.2797	0.00064061	500.6066470728521	17.007	0.18976	16.946	16.836	17.026	-0.060429					10	6	2	0	0	0	0.33346	1	1492	1492		0.50596	0	1	19661	+		55927	22548	32141	32142	68286	68286					0.06782469453787598
VWRPYLDLYFK	11	Unmodified	_VWRPYLDLYFK_					0	0	0			REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	500.606367	1498.79727	0.31658	0.00015848	0.48154	0.00024106	0.79812	0.00039954	500.6062798852174	16.936	0.23112	16.936	16.81	17.041	0	-0.0050559	-0.00032889	NaN	0.50596	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36075	+		55928	22548	32141	32142							0.06782469453787598
VWRRFGRR	8	Unmodified	_VWRRFGRR_					0	0	0			REV__ENST00000585439.1_1_19:10446311-10450252:-|nuORF	REV__ENST00000585439.1_1_19:10446311-10450252:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.8330078125	2	566.833583	1131.65261	0.15603	8.8442E-05	-1.5858	-0.0008989	-1.4298	-0.00081046	566.832524779806	22.932	0.6528	22.845	22.512	23.165	-0.087608					37	22	2	0	0	0	0.45169	1	3360	3360		5.2307	1.2863	1	90768	+		55929	22510	32142	32143	68287	68287					0.0920531060785379
VWRRWHWVWLL	11	Unmodified	_VWRRWHWVWLL_					0	0	0			REV__ENST00000233202.10_1_2:219261288-219261426:+|nuORF	REV__ENST00000233202.10_1_2:219261288-219261426:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.8300170898438	3	546.305245	1635.89391	0.62514	0.00034152	-2.0629	-0.001127	-1.4378	-0.00078548	546.3042265288882	67.418	0.44759	67.496	67.296	67.744	0.078041					34	15	3	0	0	0	0.33346	1	16909	16909		0.50596	0.50596	1	271280	+		55930	19471	32143	32144	68288	68288					0.10139501524258776
VWSLGITLI	9	Unmodified	_VWSLGITLI_					0	0	0		ENSG00000065613|ENST00000369755|SLK;nc|ENSG00000065613|Q9H2G2-2|SLK;SLK|p.Q919Efs*10|1|0.1|ENSG00000065613|chr10:104008326-104008336|TCAGAATATGC/-|frameshift_variant	ENSG00000065613|ENST00000369755|SLK	ENSG00000065613|ENST00000369755|SLK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2905578613281	2	501.305136	1000.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.831	1	77.886	77.386	78.386	0.055412								0	0	0	0.22065	1	20099	20099		15.847	0	1				55931	820	32144	32145	68289	68289					0.09544405488099983
VWTISSTL	8	Unmodified	_VWTISSTL_					0	0	0			REV__ENSG00000167720|ENST00000344595|SRR	REV__ENSG00000167720|ENST00000344595|SRR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.88031005859375	2	453.750193	905.485833	-0.23924	-0.00010856	2.2693	0.0010297	2.03	0.00092112	453.7508928552624	38.787	0.19144	38.787	38.711	38.903	0					9	6	2	0	0	0	0.34046	1	8131	8131		14.582	2.9414	1	54807	+		55932	17408	32145	32146	68290	68290					0.029309801489034726
VWTRPWRRS	9	Unmodified	_VWTRPWRRS_					0	0	0		ENST00000279249.2_1_11:65089055-65089217:+|nuORF	ENST00000279249.2_1_11:65089055-65089217:+|nuORF	ENST00000279249.2_1_11:65089055-65089217:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3427124023438	2	622.343981	1242.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.01	1	113	112.5	113.5	-0.017303								0	0	0	0.264	1	29384	29384		1.8442	0	1				55933	9110	32146	32147	68291	68291					0.06177856196813991
VWVLAPIC	8	Unmodified	_VWVLAPIC_					0	0	0		ENST00000291294.6_1_19:47123946-47124471:-|nuORF	ENST00000291294.6_1_19:47123946-47124471:-|nuORF	ENST00000291294.6_1_19:47123946-47124471:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.753662109375	2	450.754224	899.493896	0.44625	0.00020115	-0.52855	-0.00023825	-0.082304	-3.7099E-05	450.7538521336916	84.267	0.41214	84.267	84.057	84.47	0					27	15	2	0	0	0	0.45851	1	22072	22072		2.8892	0	1	245820			55934	9156	32147	32148	68292	68292					0.04012835864659792
VWVMILPT	8	Unmodified	_VWVMILPT_					0	0	0			REV__ENST00000564578.5_1_16:75670441-75675529:-|nuORF	REV__ENST00000564578.5_1_16:75670441-75675529:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.29010009765625	2	479.775157	957.53576	0.25168	0.00012075	-0.4781	-0.00022938	-0.22642	-0.00010863	479.77476657340924	16.642	0.37177	16.58	16.382	16.754	-0.062532					20	12	2	0	0	0	0.34319	1	1340	1340		5.7604	0	1	64127	+		55935	19832	32148	32149	68293	68293					0.05529391553204732
VWVMILPT	8	Unmodified	_VWVMILPT_					0	0	0			REV__ENST00000564578.5_1_16:75670441-75675529:-|nuORF	REV__ENST00000564578.5_1_16:75670441-75675529:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	479.775157	957.53576	0.091817	4.4052E-05	-0.043136	-2.0696E-05	0.048681	2.3356E-05	479.77489600937014	16.628	0.34836	16.628	16.461	16.81	0	-0.0025834	0.00025841	NaN	5.7604	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73434	+		55936	19832	32148	32149							0.05529391553204732
VWVMILPT	8	Unmodified	_VWVMILPT_					0	0	0			REV__ENST00000564578.5_1_16:75670441-75675529:-|nuORF	REV__ENST00000564578.5_1_16:75670441-75675529:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	479.775157	957.53576	0.044698	2.1445E-05	-0.30107	-0.00014445	-0.25637	-0.000123	479.7749478531161	16.798	0.32694	16.684	16.476	16.803	-0.11434	0.053404	1.0909E-05	NaN	5.7604	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85599	+		55937	19832	32148	32149							0.05529391553204732
VWWIPGHAGQL	11	Unmodified	_VWWIPGHAGQL_					0	0	0			REV__ENST00000542061.2_2_12:133087598-133088183:+|nuORF	REV__ENST00000542061.2_2_12:133087598-133088183:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.89239501953125	3	421.892619	1262.65603	-0.096882	-4.0874E-05	0.30895	0.00013035	0.21207	8.9472E-05	421.8923285818552	26.51	0.80911	26.472	26.1	26.909	-0.038671					65	28	3	0	0	0	0.40884	1	4355	4355		5.0475	0.3316	1	224540	+		55938	22135	32149	32150	68294	68294					0.03520515871173302
VWWMHYTQV	9	Unmodified	_VWWMHYTQV_					0	0	0			REV__CLN8|p.L207Q|1|0.56|ENSG00000182372|chr8:1780326-1780326|T/A|missense_variant	REV__CLN8|p.L207Q|1|0.56|ENSG00000182372|chr8:1780326-1780326|T/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.1891784667969	3	417.198943	1248.575	0.12303	5.1328E-05	4.2059	0.0017547	4.3289	0.001806	417.2001383386496	42.455	0.41786	42.547	42.354	42.772	0.091362					31	14	4	0	0	0	0.25526	1	9281	9281		4.897	2.6142	1	374070	+		55939	13230	32150	32151	68295	68295					-0.039345081632518486
VWWSTWRQR	9	Unmodified	_VWWSTWRQR_					0	0	0		ENST00000382162.7_1_22:31904270-32000328:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1;nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1	ENST00000382162.7_1_22:31904270-32000328:+|nuORF	ENST00000382162.7_1_22:31904270-32000328:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.9486083984375	3	435.559751	1303.65742	-0.37614	-0.00016383	-1.275	-0.00055534	-1.6511	-0.00071917	435.5591090412042	97.349	0.14571	97.349	97.257	97.403	0					21	14	2	0	0	0	0.26238	1	26017	26017		1.0715	0.70479	1	58580			55940	8037	32151	32152	68296	68296					0.017741499599196686
VYAAGSQFHSF	11	Unmodified	_VYAAGSQFHSF_					0	0	0		ENSG00000167701|ENST00000394955|GPT	ENSG00000167701|ENST00000394955|GPT	ENSG00000167701|ENST00000394955|GPT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.2861328125	2	607.285463	1212.55637	0.41107	0.00024964	0.49124	0.00029832	0.90231	0.00054796	607.2856807524652	46.117	0.48524	46.117	45.917	46.402	0					31	17	3	0	0	0	0.049044	1	10357	10357		98.73	81.617	1	834110			55941	6200	32152	32153	68297	68297					-0.041403465334497014
VYAAGSQFHSF	11	Unmodified	_VYAAGSQFHSF_					0	0	0		ENSG00000167701|ENST00000394955|GPT	ENSG00000167701|ENST00000394955|GPT	ENSG00000167701|ENST00000394955|GPT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.2858276367188	2	607.285463	1212.55637	0.28511	0.00017315	0.7216	0.00043821	1.0067	0.00061136	607.2858366453054	45.819	0.53215	45.879	45.677	46.209	0.059834					41	18	3	0	0	0	5.0857E-09	1	10269	10269		150.18	121.1	1	638020			55942	6200	32152	32153	68298	68298					-0.041403465334497014
VYAAGSQFHSF	11	Unmodified	_VYAAGSQFHSF_					0	0	0		ENSG00000167701|ENST00000394955|GPT	ENSG00000167701|ENST00000394955|GPT	ENSG00000167701|ENST00000394955|GPT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.2855224609375	2	607.285463	1212.55637	0.51853	0.00031489	0.53512	0.00032497	1.0536	0.00063987	607.2856232075101	45.848	0.50052	45.913	45.727	46.227	0.065048					37	17	3	0	0	0	0.00039266	1	10304	10304		105.35	76.264	1	720180			55943	6200	32152	32153	68299	68299					-0.041403465334497014
VYAALQRQLL	10	Unmodified	_VYAALQRQLL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8507690429688	2	587.850773	1173.68699	0.61193	0.00035972	-0.1966	-0.00011557	0.41533	0.00024415	587.8505838875067	53.993	0.87986	53.993	53.698	54.578	0					88	31	4	0	0	0	3.0278E-20	3	12755	12755;12799;12851		205.38	128.56	1	3398600			55944	12859	32153	32154	68300;68301;68302	68300					0.10709669185393977
VYAALQRQLL	10	Unmodified	_VYAALQRQLL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.850830078125	2	587.850773	1173.68699	0.33933	0.00019947	0.076737	4.511E-05	0.41607	0.00024458	587.8507345069673	53.919	0.87008	53.976	53.689	54.559	0.056255					94	32	4	0	0	0	3.0278E-20	3	12774	12728;12774;12827		205.38	119.05	1	3633200			55945	12859	32153	32154	68303;68304;68305	68304					0.10709669185393977
VYAALQRQLL	10	Unmodified	_VYAALQRQLL_					0	0	0		nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC	nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149|PLEC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.8509521484375	2	587.850773	1173.68699	0.52095	0.00030624	-0.3442	-0.00020234	0.17675	0.0001039	587.8504916552188	54.109	0.87274	54.093	53.833	54.706	-0.015923					85	30	4	0	0	0	3.0278E-20	2	12843	12843;12933		205.38	128.56	1	4161600			55946	12859	32153	32154	68306;68307	68306					0.10709669185393977
VYADGIFDLF	10	Unmodified	_VYADGIFDLF_					0	0	0		nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENSG00000102230|ENST00000379144|PCYT1B;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;PCYT1A|p.F165Lfs*2|1|0.24|ENSG00000161217|chr3:196242632-196242632|A/-|frameshift_variant	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.287353515625	2	580.28714	1158.55973	-0.12942	-7.5102E-05	0.24434	0.00014179	0.11492	6.6685E-05	580.2870467705744	99.171	0.57913	99.171	98.993	99.572	0					137	71	2	0	0	0	0.019821	2	26559	26530;26559		71.922	39.617	1	303960			55947	1757	32154	32155	68308;68309	68309					-0.013210964794552638
VYADGIFDLF	10	Unmodified	_VYADGIFDLF_					0	0	0		nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENSG00000102230|ENST00000379144|PCYT1B;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;PCYT1A|p.F165Lfs*2|1|0.24|ENSG00000161217|chr3:196242632-196242632|A/-|frameshift_variant	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.287109375	2	580.28714	1158.55973	0.086309	5.0084E-05	0.36659	0.00021272	0.45289	0.00026281	580.2869502526005	99.137	0.63192	99.188	98.974	99.606	0.050888					218	84	3	0	0	0	0.0048568	2	26516	26516;26546		92.491	60.186	1	524880			55948	1757	32154	32155	68310;68311	68310					-0.013210964794552638
VYADGIFDLF	10	Unmodified	_VYADGIFDLF_					0	0	0		nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENSG00000102230|ENST00000379144|PCYT1B;ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;PCYT1A|p.F165Lfs*2|1|0.24|ENSG00000161217|chr3:196242632-196242632|A/-|frameshift_variant	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2871704101562	2	580.28714	1158.55973	0.23908	0.00013873	0.12104	7.0239E-05	0.36012	0.00020897	580.2869063611736	99.253	0.74519	99.247	98.984	99.729	-0.0069046					232	95	3	0	0	0	0.0036033	3	26593	26564;26593;26629		99.799	67.493	1	759340			55949	1757	32154	32155	68312;68313;68314	68313					-0.013210964794552638
VYADIPFLL	9	Unmodified	_VYADIPFLL_					0	0	0		ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3099365234375	2	525.797143	1049.57973	0.30725	0.00016155	0.80073	0.00042102	1.108	0.00058258	525.7970202410925	95.237	0.55916	95.237	95.018	95.577	0					124	53	4	0	0	0	0.2451	1	25436	25436		15.847	4.2069	1	198090			55950	6282	32155	32156	68315	68315					0.056926992511762364
VYADIPFLL	9	Unmodified	_VYADIPFLL_					0	0	0		ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3098754882812	2	525.797143	1049.57973	0.36342	0.00019109	0.74284	0.00039059	1.1063	0.00058167	525.7971120344948	95.143	0.61597	95.226	94.959	95.575	0.082779					172	60	4	0	0	0	0.22596	1	25389	25389		21.747	4.8044	1	437230			55951	6282	32155	32156	68316	68316					0.056926992511762364
VYADIPFLL	9	Unmodified	_VYADIPFLL_					0	0	0		ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	ENSG00000168538|ENST00000334690|TRAPPC11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7974243164062	2	525.797143	1049.57973	0.57727	0.00030352	0.49877	0.00026225	1.076	0.00056577	525.7969398301307	95.237	0.63688	95.235	94.982	95.619	-0.0020142					155	61	4	0	0	0	0.1669	1	25447	25447		28.487	11.545	1	394530			55952	6282	32155	32156	68317	68317					0.056926992511762364
VYADKLLNI	9	Unmodified	_VYADKLLNI_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7366943359375	2	524.8055	1047.59645	0.50078	0.00026281	-0.27015	-0.00014178	0.23063	0.00012103	524.8052266480569	58.121	0.89542	58.207	57.891	58.787	0.085621					67	31	3	0	0	0	0.036702	1	14070	14070		71.708	7.7474	1	1523200			55953	4075	32156	32157	68318	68318					0.07455200137110296
VYADQPHIF	9	Unmodified	_VYADQPHIF_					0	0	0		ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.272216796875	2	545.271824	1088.5291	0.59904	0.00032664	0.37812	0.00020618	0.97716	0.00053282	545.2718569216506	49.227	0.85239	49.227	48.773	49.626	0					95	30	5	0	0	0	0.0013683	4	11319	11272;11319;11367;11411		118.07	85.283	1	4544600			55954	1598	32157	32158	68319;68320;68321;68322	68320					-0.011628300738266262
VYADQPHIF	9	Unmodified	_VYADQPHIF_					0	0	0		ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2595825195312	2	545.271824	1088.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.373	1	70.373	69.873	70.873	0								0	0	0	0.20238	1	17833	17833		21.747	4.8044	1				55955	1598	32157	32158	68323	68323					-0.011628300738266262
VYADQPHIF	9	Unmodified	_VYADQPHIF_					0	0	0		ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2725219726562	2	545.271824	1088.5291	0.56777	0.00030959	0.34545	0.00018836	0.91321	0.00049795	545.2719120338054	49.249	0.6837	49.294	48.961	49.645	0.044891					92	24	5	0	0	0	9.2305E-05	3	11291	11291;11337;11389		142.08	98.221	1	5142100			55956	1598	32157	32158	68324;68325;68326	68324					-0.011628300738266262
VYADQPHIF	9	Unmodified	_VYADQPHIF_					0	0	0		ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2590942382812	2	545.271824	1088.5291	0.57765	0.00031497	0.020595	1.123E-05	0.59824	0.0003262	545.2719203761944	70.179	0.67197	70.245	69.826	70.498	0.06604					37	23	2	0	0	0	0.25314	1	17836	17836		15.847	1.0089	1	249390			55957	1598	32157	32158	68327	68327					-0.011628300738266262
VYADQPHIF	9	Unmodified	_VYADQPHIF_					0	0	0		ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2720336914062	2	545.271824	1088.5291	0.45265	0.00024682	0.45076	0.00024579	0.90341	0.0004926	545.271946401611	49.195	0.7236	49.227	48.904	49.628	0.032043					87	25	4	0	0	0	2.942E-07	4	11352	11255;11308;11352;11405		168.66	120.31	1	4994400			55958	1598	32157	32158	68328;68329;68330;68331	68330					-0.011628300738266262
VYADQPHIF	9	Unmodified	_VYADQPHIF_					0	0	0		ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2711791992188	2	545.271824	1088.5291	0.62209	0.00033921	-0.17213	-9.3857E-05	0.44997	0.00024535	545.27203424055	70.207	0.82289	70.185	69.729	70.552	-0.022087					41	29	2	0	0	0	0.16283	1	17770	17770		29.082	2.1979	1	326620			55959	1598	32157	32158	68332	68332					-0.011628300738266262
VYADTIKDLL	10	Unmodified	_VYADTIKDLL_					0	0	0		ENST00000498228.1_1_1:55014277-55063089:+|nuORF;ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11	ENST00000498228.1_1_1:55014277-55063089:+|nuORF	ENST00000498228.1_1_1:55014277-55063089:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8212280273438	2	575.821347	1149.62814	-0.020391	-1.1742E-05	-0.12353	-7.1134E-05	-0.14393	-8.2875E-05	575.8213914628442	65.21	0.88473	65.21	64.91	65.795	0					94	31	4	0	0	0	0.00015406	1	16259	16259		132.13	86.395	1	1276600			55960	5564	32158	32159	68333	68333					0.05931148100421524
VYADTIKDLL	10	Unmodified	_VYADTIKDLL_					0	0	0		ENST00000498228.1_1_1:55014277-55063089:+|nuORF;ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11	ENST00000498228.1_1_1:55014277-55063089:+|nuORF	ENST00000498228.1_1_1:55014277-55063089:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8213500976562	2	575.821347	1149.62814	0.016158	9.304E-06	-0.12103	-6.969E-05	-0.10487	-6.0386E-05	575.8214161878959	65.082	0.96034	65.171	64.905	65.865	0.088882					100	35	4	0	0	0	0.00015406	2	16217	16217;16273		132.13	88.362	1	1530500			55961	5564	32158	32159	68334;68335	68334					0.05931148100421524
VYADTIKDLL	10	Unmodified	_VYADTIKDLL_					0	0	0		ENST00000498228.1_1_1:55014277-55063089:+|nuORF;ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11	ENST00000498228.1_1_1:55014277-55063089:+|nuORF	ENST00000498228.1_1_1:55014277-55063089:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.8214721679688	2	575.821347	1149.62814	-0.044785	-2.5788E-05	-0.33343	-0.000192	-0.37821	-0.00021778	575.8213638334399	65.225	0.77606	65.214	64.947	65.723	-0.011337					87	28	5	0	0	0	0.00015406	2	16239	16239;16292		132.13	88.362	1	1435600			55962	5564	32158	32159	68336;68337	68336					0.05931148100421524
VYAELNRTK	9	Unmodified	_VYAELNRTK_					0	0	0			REV__nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	REV__nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.824951171875	2	547.303655	1092.59276	0.63204	0.00034592	-0.4059	-0.00022215	0.22614	0.00012377	547.3028161531555	29.423	0.65769	29.423	29.117	29.774	0					37	23	3	0	0	0	0.23007	2	5288	5276;5288		19.257	4.0085	1	223950	+		55963	15942	32159	32160	68338;68339	68339					0.05016530363241145
VYAELNRTK	9	Unmodified	_VYAELNRTK_					0	0	0			REV__nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	REV__nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8251953125	2	547.303655	1092.59276	0.34042	0.00018631	-0.97952	-0.0005361	-0.63911	-0.00034978	547.3028560932229	29.386	0.55013	29.399	29.248	29.798	0.013474					43	18	3	0	0	0	0.29638	1	5279	5279		9.3831	0.63772	1	233140	+		55964	15942	32159	32160	68340	68340					0.05016530363241145
VYAEVSRLLL	10	Unmodified	_VYAEVSRLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.8452758789062	2	581.845156	1161.67576	0.31891	0.00018556	0.16726	9.7319E-05	0.48617	0.00028287	581.8451718341647	65.502	1.1593	65.502	65.157	66.317	0					108	41	5	0	0	0	0.0082636	4	16316	16316;16364;16417;16509		84.522	58.254	1	2207100			55965	2601	32160	32161	68341;68342;68343;68344	68341					0.10138847091275238
VYAEVSRLLL	10	Unmodified	_VYAEVSRLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.8453979492188	2	581.845156	1161.67576	-0.040137	-2.3353E-05	0.56296	0.00032755	0.52282	0.0003042	581.8454067253464	65.334	1.1445	65.423	65.135	66.279	0.088882					105	41	4	0	0	0	0.0046086	2	16321	16270;16321		93.938	53.988	1	2236800			55966	2601	32160	32161	68345;68346	68346					0.10138847091275238
VYAEVSRLLL	10	Unmodified	_VYAEVSRLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.8453369140625	2	581.845156	1161.67576	0.31325	0.00018226	0.14209	8.2676E-05	0.45534	0.00026494	581.8452044564043	65.503	1.2865	65.491	65.175	66.462	-0.01133					109	46	4	0	0	0	0.0046086	3	16304	16289;16304;16352		93.938	61.152	1	2265300			55967	2601	32160	32161	68347;68348;68349	68348					0.10138847091275238
VYAFKRLF	8	Unmodified	_VYAFKRLF_					0	0	0		ENSG00000174482|ENST00000698399|LINGO2	ENSG00000174482|ENST00000698399|LINGO2	ENSG00000174482|ENST00000698399|LINGO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2835083007812	2	522.30547	1042.59639	0.66669	0.00034822	-0.863	-0.00045075	-0.19631	-0.00010253	523.3070436681365	54.335	0.60411	54.398	54.063	54.667	0.063202					45	22	3	0	0	0	0.32778	1	12931	12931		20.871	14.665	1	314900			55968	6797	32161	32162	68350	68350					0.07679244927771833
VYAFNLDTF	9	Unmodified	_VYAFNLDTF_					0	0	0		ENST00000562913.5_1_16:87744798-87760508:-|nuORF;ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4	ENST00000562913.5_1_16:87744798-87760508:-|nuORF	ENST00000562913.5_1_16:87744798-87760508:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2683715820312	2	545.266207	1088.51786	0.44132	0.00024064	1.8913	0.0010313	2.3326	0.0012719	545.2679471339385	80.822	1.5055	80.822	80.389	81.894	0					219	66	5	0	0	0	0.03069	2	21157	21157;21260		60.074	36.053	1	8517000			55969	1909	32162	32163	68351;68352	68351					-0.02285652167961416
VYAFNLDTF	9	Unmodified	_VYAFNLDTF_					0	0	0		ENST00000562913.5_1_16:87744798-87760508:-|nuORF;ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4	ENST00000562913.5_1_16:87744798-87760508:-|nuORF	ENST00000562913.5_1_16:87744798-87760508:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3170776367188	2	545.266207	1088.51786	0.40763	0.00022227	1.6021	0.00087354	2.0097	0.0010958	545.2677075566853	80.748	1.7043	80.813	80.446	82.15	0.065102					236	77	5	0	0	0	5.6973E-07	1	21046	21046		174.73	85.824	1	9070800			55970	1909	32162	32163	68353	68353					-0.02285652167961416
VYAFNLDTF	9	Unmodified	_VYAFNLDTF_					0	0	0		ENST00000562913.5_1_16:87744798-87760508:-|nuORF;ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4	ENST00000562913.5_1_16:87744798-87760508:-|nuORF	ENST00000562913.5_1_16:87744798-87760508:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.31689453125	2	545.266207	1088.51786	0.60331	0.00032897	1.0403	0.00056722	1.6436	0.00089619	545.2672143686173	80.868	1.891	80.842	80.405	82.296	-0.026825					212	77	5	0	0	0	2.717E-15	1	21018	21018		174.73	85.824	1	10194000			55971	1909	32162	32163	68354	68354					-0.02285652167961416
VYAFSIENF	9	Unmodified	_VYAFSIENF_					0	0	0		ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2664184570312	2	545.266207	1088.51786	0.52409	0.00028577	-0.14782	-8.0602E-05	0.37627	0.00020517	545.2663118183908	79.577	1.0558	79.577	79.184	80.24	0					143	39	5	0	0	0	1.0901E-16	2	20605	20605;20649		214.14	121.32	1	8379400			55972	2806	32163	32164	68355;68356	68355					-0.02285652167961416
VYAFSIENF	9	Unmodified	_VYAFSIENF_					0	0	0		ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.31689453125	2	545.266207	1088.51786	0.65266	0.00035587	0.3738	0.00020382	1.0265	0.00055969	545.266851011308	82.835	0.88459	82.835	82.436	83.321	0					55	33	2	0	0	0	0.17242	1	21763	21763		29.082	15.176	1	239960			55973	2806	32163	32164	68357	68357					-0.02285652167961416
VYAFSIENF	9	Unmodified	_VYAFSIENF_					0	0	0		ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2667236328125	2	545.266207	1088.51786	0.67065	0.00036569	-0.2335	-0.00012732	0.43716	0.00023837	545.2662651505926	79.533	1.0212	79.594	79.239	80.26	0.061417					127	40	5	0	0	0	1.0901E-16	3	20622	20576;20622;20672		214.14	121.32	1	9119200			55974	2806	32163	32164	68358;68359;68360	68359					-0.02285652167961416
VYAFSIENF	9	Unmodified	_VYAFSIENF_					0	0	0		ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3167114257812	2	545.266207	1088.51786	0.82625	0.00045053	0.28639	0.00015616	1.1126	0.00060669	545.7673772781235	84.422	0.19543	84.5	84.342	84.537	0.077095					9	7	2	0	0	0	0.20167	1	22119	22119		22.736	4.5899	1	124120			55975	2806	32163	32164	68361	68361					-0.02285652167961416
VYAFSIENF	9	Unmodified	_VYAFSIENF_					0	0	0		ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.31689453125	2	545.266207	1088.51786	0.54884	0.00029926	0.46308	0.0002525	1.0119	0.00055177	545.2666175349664	82.152	0.57532	82.221	81.992	82.568	0.068993					37	23	2	0	0	0	0.13898	1	21487	21487		43.858	13.222	1	173160			55976	2806	32163	32164	68362	68362					-0.02285652167961416
VYAFSIENF	9	Unmodified	_VYAFSIENF_					0	0	0		ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	ENST00000528557.5_1_1:26759436-26769365:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2662963867188	2	545.266207	1088.51786	0.69627	0.00037965	-0.26477	-0.00014437	0.43149	0.00023528	545.2662801582026	79.656	1.1244	79.627	79.278	80.403	-0.028931					119	41	5	0	0	0	1.0901E-16	3	20609	20609;20653;20703		214.14	121.32	1	9729100			55977	2806	32163	32164	68363;68364;68365	68363					-0.02285652167961416
VYAGAVLSLR	10	Unmodified	_VYAGAVLSLR_					0	0	0			REV__ENSG00000186509|ENST00000335397|OR9Q1	REV__ENSG00000186509|ENST00000335397|OR9Q1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7113037109375	2	524.811116	1047.60768	0.58449	0.00030675	0.94089	0.00049379	1.5254	0.00080053	524.8112307272528	68.922	0.40733	68.993	68.83	69.237	0.071938					30	14	3	0	0	0	0.29589	1	17359	17359		17.113	6.289	1	127520	+		55978	18451	32164	32165	68366	68366					0.08578022231267823
VYAGLLHRF	9	Unmodified	_VYAGLLHRF_					0	0	0			REV__ENSG00000128482|ENST00000461366|RNF112	REV__ENSG00000128482|ENST00000461366|RNF112	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2952270507812	2	538.306001	1074.59745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.425	1	63.425	62.925	63.925	0								0	0	0	0.24077	1	15708	15708		9.3474	0	1		+		55979	15370	32165	32166	68367	68367					0.06313459296711699
VYAGNFVEV	9	Unmodified	_VYAGNFVEV_					0	0	0		ENST00000464877.1_1_3:186289902-186295640:+|nuORF;ENSG00000090520|ENST00000265028|DNAJB11	ENST00000464877.1_1_3:186289902-186295640:+|nuORF	ENST00000464877.1_1_3:186289902-186295640:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.826416015625	2	499.2531	996.491647	0.33147	0.00016549	-0.12115	-6.0484E-05	0.21033	0.00010501	499.25281769418973	61.107	0.42728	61.107	60.908	61.335	0					27	15	2	0	0	0	0.03332	1	14986	14986		78.728	47.46	1	1352100			55980	1380	32166	32167	68368	68368					-0.006739213394212129
VYAGNFVEV	9	Unmodified	_VYAGNFVEV_					0	0	0		ENST00000464877.1_1_3:186289902-186295640:+|nuORF;ENSG00000090520|ENST00000265028|DNAJB11	ENST00000464877.1_1_3:186289902-186295640:+|nuORF	ENST00000464877.1_1_3:186289902-186295640:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.8262023925781	2	499.2531	996.491647	0.33498	0.00016724	-0.13758	-6.8689E-05	0.19739	9.8549E-05	499.25296900952884	61.005	0.45847	61.102	60.896	61.354	0.096989					26	16	2	0	0	0	0.082808	1	14969	14969		58.679	58.679	1	1301600			55981	1380	32166	32167	68369	68369					-0.006739213394212129
VYAGNFVEV	9	Unmodified	_VYAGNFVEV_					0	0	0		ENST00000464877.1_1_3:186289902-186295640:+|nuORF;ENSG00000090520|ENST00000265028|DNAJB11	ENST00000464877.1_1_3:186289902-186295640:+|nuORF	ENST00000464877.1_1_3:186289902-186295640:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2530822753906	2	499.2531	996.491647	0.35695	0.00017821	-0.17442	-8.7078E-05	0.18253	9.1128E-05	499.2529197350301	61.058	0.45838	61.049	60.838	61.296	-0.0094566					27	16	2	0	0	0	0.006189	1	14973	14973		85.272	47.096	1	2079700			55982	1380	32166	32167	68370	68370					-0.006739213394212129
VYAHFPINVVI	11	Unmodified	_VYAHFPINVVI_					0	0	0		ENST00000511075.5_1_4:39457912-39460059:-|nuORF;ENSG00000163682|ENST00000295955|RPL9;ENST00000439124.1_1_6:64325734-64326112:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.3607788085938	2	636.360973	1270.70739	0.15233	9.694E-05	0.241	0.00015336	0.39333	0.0002503	636.3610382050147	73.918	0.43839	73.918	73.689	74.127	0					23	14	2	0	0	0	0.18241	1	18923	18923		32.786	21.291	1	370690			55983	11380	32167	32168	68371	68371					0.08286839845209215
VYAHFPINVVI	11	Unmodified	_VYAHFPINVVI_					0	0	0		ENST00000511075.5_1_4:39457912-39460059:-|nuORF;ENSG00000163682|ENST00000295955|RPL9;ENST00000439124.1_1_6:64325734-64326112:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.3609008789062	2	636.360973	1270.70739	0.45634	0.0002904	-0.59249	-0.00037704	-0.13615	-8.6638E-05	636.3605330354625	73.857	0.48859	73.909	73.747	74.236	0.052368					25	16	2	0	0	0	0.16442	1	18911	18911		34.402	19.153	1	490170			55984	11380	32167	32168	68372	68372					0.08286839845209215
VYAHFPINVVI	11	Unmodified	_VYAHFPINVVI_					0	0	0		ENST00000511075.5_1_4:39457912-39460059:-|nuORF;ENSG00000163682|ENST00000295955|RPL9;ENST00000439124.1_1_6:64325734-64326112:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	ENST00000511075.5_1_4:39457912-39460059:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.8629150390625	2	636.360973	1270.70739	0.53492	0.0003404	-0.51019	-0.00032466	0.024729	1.5737E-05	636.8621185578668	74.028	0.36854	73.997	73.716	74.085	-0.030655					19	12	2	0	0	0	0.35522	1	18930	18930		17.113	2.7075	1	458830			55985	11380	32167	32168	68373	68373					0.08286839845209215
VYAHIYHQHF	10	Unmodified	_VYAHIYHQHF_					0	0	0		ENSG00000114978|ENST00000396049|MOB1A;ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENSG00000114978|ENST00000396049|MOB1A	ENSG00000114978|ENST00000396049|MOB1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.8839111328125	3	438.884123	1313.63054	0.13623	5.9791E-05	-0.34151	-0.00014988	-0.20528	-9.0092E-05	438.8839773024612	30.253	1.6359	30.253	29.917	31.553	0					175	58	5	0	0	0	0.29874	1	5675	5675		20.581	14.347	1	4054100			55986	2598	32168	32169	68374	68374					-0.013729586512681635
VYAHIYHQHF	10	Unmodified	_VYAHIYHQHF_					0	0	0		ENSG00000114978|ENST00000396049|MOB1A;ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENSG00000114978|ENST00000396049|MOB1A	ENSG00000114978|ENST00000396049|MOB1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.8841247558594	3	438.884123	1313.63054	0.117	5.1352E-05	-0.31791	-0.00013953	-0.2009	-8.8174E-05	438.8839524273926	30.246	1.5992	30.274	29.901	31.501	0.027946					182	56	5	0	0	0	0.26354	2	5651	5651;5705		24.882	18.258	1	3930100			55987	2598	32168	32169	68375;68376	68375					-0.013729586512681635
VYAHIYHQHF	10	Unmodified	_VYAHIYHQHF_					0	0	0		ENSG00000114978|ENST00000396049|MOB1A;ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENSG00000114978|ENST00000396049|MOB1A	ENSG00000114978|ENST00000396049|MOB1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.88421630859375	3	438.884123	1313.63054	-0.201	-8.8218E-05	0.044319	1.9451E-05	-0.15669	-6.8767E-05	438.88414445544714	30.247	1.4486	30.274	29.956	31.405	0.027157					178	51	5	0	0	0	0.26354	2	5612	5612;5666		24.882	19.626	1	3864900			55988	2598	32168	32169	68377;68378	68377					-0.013729586512681635
VYAILTHGI	9	Unmodified	_VYAILTHGI_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7875671386719	2	493.78711	985.559667	0.61196	0.00030218	0.52397	0.00025873	1.1359	0.00056091	493.7872935105394	55.304	1.1222	55.375	54.898	56.02	0.070889					126	41	5	0	0	0	4.6753E-07	3	13163	13163;13210;13265		161.89	87.498	1	6640700			55989	1728	32169	32170	68379;68380;68381	68379					0.06630948311226348
VYAILTHGI	9	Unmodified	_VYAILTHGI_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7872619628906	2	493.78711	985.559667	0.40283	0.00019891	0.63524	0.00031367	1.0381	0.00051258	493.78731837036906	55.521	1.6757	55.502	55.025	56.7	-0.019077					131	61	5	0	0	0	4.6753E-07	4	13215	13215;13263;13310;13359		161.89	96.721	1	6487600			55990	1728	32169	32170	68382;68383;68384;68385	68382					0.06630948311226348
VYAILTHGI	9	Unmodified	_VYAILTHGI_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.78711	985.559667	0.35443	0.00017501	0.74738	0.00036905	1.1018	0.00054406	493.7873867240636	55.394	1.0131	55.394	55.008	56.021	0	-0.029649	0.00011059	NaN	161.89	107	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6347200			55991	1728	32169	32170							0.06630948311226348
VYAKGAEVMGS	11	Unmodified	_VYAKGAEVMGS_					0	0	0			REV__ENSG00000131584|ENST00000354700|ACAP3	REV__ENSG00000131584|ENST00000354700|ACAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3236083984375	2	556.276249	1110.53795	0.53066	0.00029519	-1.5049	-0.00083712	-0.97422	-0.00054193	556.2753881688533	66.037	0.6626	66.121	65.779	66.441	0.083832					48	23	3	0	0	0	0.31312	1	16597	16597		21.537	8.0291	1	342740	+		55992	15524	32170	32171	68386	68386					-0.01290224499643955
VYAKLLHRY	9	Unmodified	_VYAKLLHRY_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.8411865234375	2	581.840208	1161.66586	0.46585	0.00027105	0.37743	0.0002196	0.84328	0.00049065	581.8404977648837	29.568	0.56351	29.568	29.324	29.888	0					39	19	3	0	0	0	0.023967	1	5302	5302		62.573	46.424	1	231990			55993	1825	32171	32172	68387	68387					0.0914970387655103
VYAKLLHRY	9	Unmodified	_VYAKLLHRY_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.8411865234375	2	581.840208	1161.66586	0.32604	0.00018971	0.081205	4.7249E-05	0.40725	0.00023695	581.8400736218932	29.551	0.67426	29.563	29.302	29.976	0.012266					46	22	3	0	0	0	0.023967	1	5286	5286		62.573	46.424	1	212220			55994	1825	32171	32172	68388	68388					0.0914970387655103
VYAKLLHRY	9	Unmodified	_VYAKLLHRY_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.8406372070312	2	581.840208	1161.66586	0.089524	5.2089E-05	0.56364	0.00032795	0.65317	0.00038004	581.8405043490441	29.638	0.42911	29.651	29.421	29.85	0.013474					32	14	3	0	0	0	0.075169	1	5308	5308		62.573	46.424	1	195610			55995	1825	32171	32172	68389	68389					0.0914970387655103
VYAMDSTLVF	10	Unmodified	_VYAMDSTLVF_					0	0	0			REV__ENSG00000011405|ENST00000691414|PIK3C2A	REV__ENSG00000011405|ENST00000691414|PIK3C2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.2975463867188	2	573.281	1144.54745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.677	1	84.665	84.165	85.165	-0.01284								0	0	0	0.33354	1	22197	22197		21.747	0.87544	1		+		55996	13430	32172	32173	68390	68390					-0.01904456214106176
VYANGIRNI	9	Unmodified	_VYANGIRNI_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2852783203125	2	510.285266	1018.55598	0.73461	0.00037486	-0.39399	-0.00020105	0.34062	0.00017381	510.28492893857117	37.397	0.80403	37.397	37.152	37.956	0					52	28	3	0	0	0	0.00056175	1	7683	7683		128.37	61.909	1	651980			55997	4655	32173	32174	68391	68391					0.047442785373846164
VYANGIRNI	9	Unmodified	_VYANGIRNI_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2853088378906	2	510.285266	1018.55598	0.33164	0.00016923	-0.32084	-0.00016372	0.010797	5.5094E-06	510.28511035868627	37.299	0.67875	37.387	37.09	37.768	0.08741					56	24	3	0	0	0	0.030157	1	7658	7658		78.149	31.229	1	703130			55998	4655	32173	32174	68392	68392					0.047442785373846164
VYANGIRNI	9	Unmodified	_VYANGIRNI_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2851867675781	2	510.285266	1018.55598	0.36092	0.00018417	0.050901	2.5974E-05	0.41182	0.00021014	510.28514848666435	37.226	0.70135	37.319	37.114	37.816	0.093014					50	25	3	0	0	0	0.00051458	1	7633	7633		128.37	64.803	1	766590			55999	4655	32173	32174	68393	68393					0.047442785373846164
VYAPNVYGSGP	11	Unmodified	_VYAPNVYGSGP_					0	0	0			REV__nc|ENSG00000103534|Q6UXY8-2|TMC5	REV__nc|ENSG00000103534|Q6UXY8-2|TMC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7950439453125	2	562.274564	1122.53457	0.62799	0.0003531	0.13561	7.625E-05	0.7636	0.00042935	562.2747050704792	56.542	0.65998	56.621	56.437	57.097	0.078674					34	24	2	0	0	0	0.30789	1	13607	13607		22.736	6.5872	1	458850	+		56000	14378	32174	32175	68394	68394					-0.021791512820072967
VYAPPVGGFSF	11	Unmodified	_VYAPPVGGFSF_					0	0	0		nc|ENSG00000136930|Q99436-2|PSMB7;ENSG00000136930|ENST00000259457|PSMB7	nc|ENSG00000136930|Q99436-2|PSMB7	nc|ENSG00000136930|Q99436-2|PSMB7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.7899169921875	2	570.78985	1139.56515	0.6468	0.00036919	-1.2585	-0.00071834	-0.61171	-0.00034916	570.7894311600439	78.287	0.74575	78.287	77.979	78.725	0					77	27	4	0	0	0	0.33306	1	20282	20282		19.257	6.2145	1	483190			56001	4014	32175	32176	68395	68395					0.0009462710304433131
VYAPPVGGFSF	11	Unmodified	_VYAPPVGGFSF_					0	0	0		nc|ENSG00000136930|Q99436-2|PSMB7;ENSG00000136930|ENST00000259457|PSMB7	nc|ENSG00000136930|Q99436-2|PSMB7	nc|ENSG00000136930|Q99436-2|PSMB7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.2915649414062	2	570.78985	1139.56515	0.73379	0.00041884	-0.69995	-0.00039953	0.033835	1.9313E-05	570.7893853419184	78.316	0.72865	78.285	77.957	78.686	-0.030434					66	27	3	0	0	0	0.37255	1	20269	20269		14.838	2.3067	1	490950			56002	4014	32175	32176	68396	68396					0.0009462710304433131
VYAQKHQQL	9	Unmodified	_VYAQKHQQL_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;TRIM33|p.M845Nfs*3|1|0.32|ENSG00000197323|chr1:114405644-114405645|-/T|frameshift_variant	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.803955078125	2	557.803823	1113.59309	0.2207	0.00012311	-1.3323	-0.00074314	-1.1116	-0.00062004	557.803643884716	16.682	0.77371	16.682	16.267	17.041	0					75	26	5	0	0	0	0.21303	1	1450	1450		21.747	9.2151	1	328660			56003	7953	32176	32177	68397	68397					0.04083950083122545
VYAQKHQQL	9	Unmodified	_VYAQKHQQL_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;TRIM33|p.M845Nfs*3|1|0.32|ENSG00000197323|chr1:114405644-114405645|-/T|frameshift_variant	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.8036499023438	2	557.803823	1113.59309	0.13325	7.4328E-05	-1.7124	-0.0009552	-1.5792	-0.00088087	557.8036813316915	16.814	0.78355	16.7	16.33	17.114	-0.11434					82	27	5	0	0	0	0.0032391	2	1450	1450;1510		100.37	62.397	1	360680			56004	7953	32176	32177	68398;68399	68398					0.04083950083122545
VYAQKHQQL	9	Unmodified	_VYAQKHQQL_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;TRIM33|p.M845Nfs*3|1|0.32|ENSG00000197323|chr1:114405644-114405645|-/T|frameshift_variant	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.8037109375	2	557.803823	1113.59309	0.26408	0.0001473	-0.224	-0.00012495	0.040074	2.2354E-05	557.8035344636991	16.751	0.71346	16.688	16.414	17.127	-0.062534					42	25	2	0	0	0	0.037153	1	1408	1408		74.423	56.276	1	348730			56005	7953	32176	32177	68400	68400					0.04083950083122545
VYAQVARLF	9	Unmodified	_VYAQVARLF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;ENST00000394947.7_1_15:75702535-75702580:-|nuORF	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.8063354492188	2	533.805834	1065.59712	0.50602	0.00027012	0.42398	0.00022632	0.93	0.00049644	533.8060918150251	58.847	1.3388	58.847	58.531	59.87	0					115	46	3	0	0	0	4.6984E-11	4	14318	14318;14363;14413;14441		187.93	95.107	1	5672300			56006	6352	32177	32178	68401;68402;68403;68404	68401					0.06694039576836985
VYAQVARLF	9	Unmodified	_VYAQVARLF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;ENST00000394947.7_1_15:75702535-75702580:-|nuORF	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.8063354492188	2	533.805834	1065.59712	0.38681	0.00020648	0.41628	0.00022221	0.80309	0.0004287	533.8061283602765	58.677	1.5375	58.769	58.366	59.904	0.091301					150	54	4	0	0	0	5.2996E-06	2	14256	14256;14308		156.16	74.543	1	6449100			56007	6352	32177	32178	68405;68406	68405					0.06694039576836985
VYAQVARLF	9	Unmodified	_VYAQVARLF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;ENST00000394947.7_1_15:75702535-75702580:-|nuORF	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.8062744140625	2	533.805834	1065.59712	0.55437	0.00029592	0.20031	0.00010693	0.75467	0.00040285	533.8060731741774	58.859	1.2939	58.845	58.553	59.847	-0.014267					162	45	5	0	0	0	2.2223E-07	3	14317	14317;14361;14433		171.47	89.854	1	6911300			56008	6352	32177	32178	68407;68408;68409	68407					0.06694039576836985
VYASATLFAPF	11	Unmodified	_VYASATLFAPF_					0	0	0			REV__nc|ENSG00000164251|P55085|F2RL1	REV__nc|ENSG00000164251|P55085|F2RL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.81103515625	2	593.810782	1185.60701	0.47647	0.00028293	0.42339	0.00025141	0.89986	0.00053434	593.810783229008	68.579	1.3745	68.579	67.911	69.285	0					81	50	2	0	0	0	0.10264	1	17283	17283		39.95	3.8227	1	421800	+		56009	17141	32178	32179	68410	68410					0.02163182791559848
VYASATLFAPF	11	Unmodified	_VYASATLFAPF_					0	0	0			REV__nc|ENSG00000164251|P55085|F2RL1	REV__nc|ENSG00000164251|P55085|F2RL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8104858398438	2	593.810782	1185.60701	0.45481	0.00027007	0.41556	0.00024676	0.87037	0.00051684	593.8107492385877	68.639	1.2541	68.62	67.808	69.062	-0.019157					90	44	3	0	0	0	0.10264	1	17287	17287		39.95	3.8227	1	443810	+		56010	17141	32178	32179	68411	68411					0.02163182791559848
VYASDRATF	9	Unmodified	_VYASDRATF_					0	0	0		ENST00000380120.6_1_6:4116110-4130812:-|nuORF;ECI2|p.F321Sfs*14|1|0.17|ENSG00000198721|chr6:4117375-4117375|A/-|frameshift_variant;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2;ENST00000464583.5_1_6:4119386-4125894:-|nuORF;ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF	ENST00000380120.6_1_6:4116110-4130812:-|nuORF	ENST00000380120.6_1_6:4116110-4130812:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2534790039062	2	515.253631	1028.49271	0.36589	0.00018853	1.199	0.00061777	1.5649	0.0008063	515.2533097457929	33.297	0.65797	33.352	33.117	33.775	0.055309					71	23	5	0	0	0	0.048637	1	6490	6490		53.404	11.564	1	773990			56011	278	32179	32180	68412	68412					-0.020397069705495596
VYASDRATF	9	Unmodified	_VYASDRATF_					0	0	0		ENST00000380120.6_1_6:4116110-4130812:-|nuORF;ECI2|p.F321Sfs*14|1|0.17|ENSG00000198721|chr6:4117375-4117375|A/-|frameshift_variant;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2;ENST00000464583.5_1_6:4119386-4125894:-|nuORF;ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF	ENST00000380120.6_1_6:4116110-4130812:-|nuORF	ENST00000380120.6_1_6:4116110-4130812:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2772216796875	2	515.253631	1028.49271	0.05871	3.025E-05	1.6742	0.00086264	1.7329	0.00089289	515.2534765836126	33.303	0.69213	33.37	33.132	33.824	0.0667					63	24	4	0	0	0	0.097101	1	6429	6429		57.249	21.205	1	679010			56012	278	32179	32180	68413	68413					-0.020397069705495596
VYASDRATF	9	Unmodified	_VYASDRATF_					0	0	0		ENST00000380120.6_1_6:4116110-4130812:-|nuORF;ECI2|p.F321Sfs*14|1|0.17|ENSG00000198721|chr6:4117375-4117375|A/-|frameshift_variant;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2;ENST00000464583.5_1_6:4119386-4125894:-|nuORF;ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF	ENST00000380120.6_1_6:4116110-4130812:-|nuORF	ENST00000380120.6_1_6:4116110-4130812:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	515.253631	1028.49271	0.38234	0.000197	1.3861	0.00071419	1.7684	0.00091119	515.2533452729175	33.463	0.7949	33.463	33.174	33.969	0	0.068297	-1.3348E-05	NaN	53.404	73	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513540			56013	278	32179	32180							-0.020397069705495596
VYASLGALLF	10	Unmodified	_VYASLGALLF_					0	0	0		ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3024291992188	2	527.302593	1052.59063	0.47345	0.00024965	-0.68432	-0.00036084	-0.21086	-0.00011119	527.302084510684	91.894	0.658	91.894	91.673	92.331	0					108	43	3	0	0	0	3.7338E-05	1	24450	24450		133.7	69.466	1	481890			56014	7071	32180	32181	68414	68414					0.06644101625465737
VYASLGALLF	10	Unmodified	_VYASLGALLF_					0	0	0		ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3026123046875	2	527.302593	1052.59063	0.43969	0.00023185	-0.58557	-0.00030877	-0.14588	-7.6924E-05	527.302194270154	91.786	0.8996	91.877	91.61	92.51	0.090668					118	60	3	0	0	0	3.7338E-05	3	24378	24323;24378;24394		133.7	69.466	1	609740			56015	7071	32180	32181	68415;68416;68417	68416					0.06644101625465737
VYASLGALLF	10	Unmodified	_VYASLGALLF_					0	0	0		ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	ENST00000533377.1_1_8:145066406-145067006:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.30224609375	2	527.302593	1052.59063	0.66965	0.00035311	-0.95595	-0.00050407	-0.2863	-0.00015097	527.302044568911	91.887	0.70615	91.888	91.622	92.328	0.00046539					96	44	3	0	0	0	0.00017188	1	24432	24432		120.45	56.214	1	466550			56016	7071	32180	32181	68418	68418					0.06644101625465737
VYASPYLLF	9	Unmodified	_VYASPYLLF_					0	0	0			REV__TMEM229A|p.H129Y|1|0.15|ENSG00000234224|chr7:124032619-124032619|G/A|missense_variant	REV__TMEM229A|p.H129Y|1|0.15|ENSG00000234224|chr7:124032619-124032619|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.1656494140625	2	536.789318	1071.56408	0.55733	0.00029917	-2.5437	-0.0013654	-1.9864	-0.0010663	536.788459855813	95.222	0.10393	95.22	95.157	95.261	-0.0020142					14	9	2	0	0	0	0.24739	1	25418	25418		13.508	4.1604	1	55130	+		56017	23340	32181	32182	68419	68419					0.03116412734129881
VYASPYLLF	9	Unmodified	_VYASPYLLF_					0	0	0			REV__TMEM229A|p.H129Y|1|0.15|ENSG00000234224|chr7:124032619-124032619|G/A|missense_variant	REV__TMEM229A|p.H129Y|1|0.15|ENSG00000234224|chr7:124032619-124032619|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.6610717773438	2	536.789318	1071.56408	0.55487	0.00029785	-1.0481	-0.0005626	-0.49322	-0.00026475	536.7886735169009	95.302	0.084274	95.3	95.277	95.362	-0.0020142					13	9	2	0	0	0	0.25417	1	25471	25471		8.5933	2.8329	1	55475	+		56018	23340	32181	32182	68420	68420					0.03116412734129881
VYASPYLLF	9	Unmodified	_VYASPYLLF_					0	0	0			REV__TMEM229A|p.H129Y|1|0.15|ENSG00000234224|chr7:124032619-124032619|G/A|missense_variant	REV__TMEM229A|p.H129Y|1|0.15|ENSG00000234224|chr7:124032619-124032619|G/A|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	536.789318	1071.56408	0.27647	0.00014841	-4.4973	-0.0024141	-4.2209	-0.0022657	536.7880872452199	95.363	0.031784	95.363	95.344	95.376	0	0.071404	-0.0018299	NaN	13.508	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19951	+		56019	23340	32181	32182							0.03116412734129881
VYATDVAFFY	10	Unmodified	_VYATDVAFFY_					0	0	0			REV__ENST00000376899.8_1_11:66054976-66056456:-|nuORF	REV__ENST00000376899.8_1_11:66054976-66056456:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.2864379882812	2	598.28714	1194.55973	0.47706	0.00028542	-1.8796	-0.0011245	-1.4025	-0.00083912	598.2857589506386	66.8	0.83408	66.884	66.659	67.493	0.083832					53	29	3	0	0	0	0.30586	1	16734	16734		19.257	4.4187	1	522240	+		56020	17858	32182	32183	68421	68421					-0.02977096479435204
VYATFFEIY	9	Unmodified	_VYATFFEIY_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.78466796875	2	576.784233	1151.55391	0.40762	0.00023511	0.14541	8.3868E-05	0.55302	0.00031898	576.7842870278577	87.049	0.67506	87.049	86.809	87.484	0					59	28	3	0	0	0	0.006189	1	22946	22946		85.272	54.635	1	315950			56021	889	32183	32184	68422	68422					-0.015801949911065094
VYATFFEIY	9	Unmodified	_VYATFFEIY_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.7843627929688	2	576.784233	1151.55391	0.39279	0.00022655	0.33535	0.00019343	0.72814	0.00041998	576.7842148108888	86.984	0.64673	87.071	86.682	87.329	0.08709					59	26	3	0	0	0	0.057684	1	22910	22910		68.081	37.444	1	211370			56022	889	32183	32184	68423	68423					-0.015801949911065094
VYATFFEIY	9	Unmodified	_VYATFFEIY_					0	0	0		nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	nc|ENSG00000068796|O00139-2|KIF2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.7847900390625	2	576.784233	1151.55391	0.38421	0.00022161	0.49182	0.00028367	0.87603	0.00050528	576.7841283904347	87.058	0.69611	87.053	86.639	87.335	-0.0056229					64	28	3	0	0	0	0.0082143	1	22932	22932		88.904	50.93	1	319170			56023	889	32183	32184	68424	68424					-0.015801949911065094
VYATMPINSF	10	Oxidation (M)	_VYATM(Oxidation (M))PINSF_		VYATM(1)PINSF		VYATM(120)PINSF	0	0	1		ENSG00000163848|ENST00000360647|ZNF148;ENST00000497929.1_1_3:124951187-125011317:-|nuORF	ENSG00000163848|ENST00000360647|ZNF148	ENSG00000163848|ENST00000360647|ZNF148	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.7786865234375	2	579.778625	1157.5427	0.38115	0.00022098	-0.46809	-0.00027139	-0.086939	-5.0405E-05	579.7783874784213	56.964	0.8356	56.964	56.66	57.495	0					80	30	4	0	0	0	0.0012047	1	13746	13746		118.07	69.723	1	1350600			56024	5744	32184	32185	68425	68425		678			-0.02977340356892455
VYATMPINSF	10	Oxidation (M)	_VYATM(Oxidation (M))PINSF_		VYATM(1)PINSF		VYATM(140)PINSF	0	0	1		ENSG00000163848|ENST00000360647|ZNF148;ENST00000497929.1_1_3:124951187-125011317:-|nuORF	ENSG00000163848|ENST00000360647|ZNF148	ENSG00000163848|ENST00000360647|ZNF148	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.7787475585938	2	579.778625	1157.5427	0.36448	0.00021132	-0.51041	-0.00029592	-0.14593	-8.4607E-05	579.7784767690518	56.826	0.73709	56.905	56.628	57.365	0.078674					84	27	6	0	0	0	3.3013E-05	1	13700	13700		136.39	90.371	1	1452000			56025	5744	32184	32185	68426	68426		678			-0.02977340356892455
VYATMPINSF	10	Oxidation (M)	_VYATM(Oxidation (M))PINSF_		VYATM(1)PINSF		VYATM(110)PINSF	0	0	1		ENSG00000163848|ENST00000360647|ZNF148;ENST00000497929.1_1_3:124951187-125011317:-|nuORF	ENSG00000163848|ENST00000360647|ZNF148	ENSG00000163848|ENST00000360647|ZNF148	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.77880859375	2	579.778625	1157.5427	0.43173	0.00025031	-0.73693	-0.00042726	-0.3052	-0.00017695	579.7782668075262	57.006	0.65716	56.987	56.729	57.386	-0.019081					71	23	4	0	0	0	0.0017661	1	13772	13772		110.55	77.767	1	1234200			56026	5744	32184	32185	68427	68427		678			-0.02977340356892455
VYATNYLPL	9	Unmodified	_VYATNYLPL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3026123046875	2	527.2844	1052.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.715	1	83.698	83.198	84.198	-0.016823								0	0	0	0.21726	1	21899	21899		16.942	1.0951	1		+		56027	23038	32185	32186	68428	68428					0.030072247287534992
VYATSQQIF	9	Unmodified	_VYATSQQIF_					0	0	0		APOOL|p.T242Sfs*19|1|0.58|ENSG00000155008|chrX:85087593-85087596|CAAC/-|frameshift_variant;ENSG00000155008|ENST00000373173|APOOL	APOOL|p.T242Sfs*19|1|0.58|ENSG00000155008|chrX:85087593-85087596|CAAC/-|frameshift_variant	APOOL|p.T242Sfs*19|1|0.58|ENSG00000155008|chrX:85087593-85087596|CAAC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2822875976562	2	528.771657	1055.52876	0.082133	4.343E-05	-0.67447	-0.00035664	-0.59233	-0.00031321	528.7714583695257	61.921	0.71316	62.018	61.701	62.414	0.096985					35	25	2	0	0	0	0.2616	1	15287	15287		14.582	0.67564	1	162870			56028	50	32186	32187	68429	68429					0.00321750206330762
VYAVHFVQGLD	11	Unmodified	_VYAVHFVQGLD_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.8211059570312	2	624.324588	1246.63462	0.58721	0.00036661	-1.0913	-0.00068131	-0.50406	-0.0003147	624.3242773468805	47.554	0.4454	47.554	47.352	47.797	0					19	15	2	0	0	0	0.3259	1	10817	10817		13.906	2.4113	1	283190	+		56029	15472	32187	32188	68430	68430					0.02117086051816841
VYAVIPAEKF	10	Unmodified	_VYAVIPAEKF_					0	0	0		nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1;ENST00000474020.5_1_1:47118240-47133739:-|nuORF	nc|ENSG00000123472|Q5TC12-2|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.794189453125	2	568.82115	1135.62775	0.38134	0.00021692	-0.73146	-0.00041607	-0.35012	-0.00019916	568.8209431736492	57.097	0.56258	57.097	56.962	57.525	0					33	20	2	0	0	0	0.27529	1	13752	13752		29.841	7.1043	1	210350			56030	3106	32188	32189	68431	68431					0.06535773171231085
VYAVIPAEKF	10	Unmodified	_VYAVIPAEKF_					0	0	0		nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1;ENST00000474020.5_1_1:47118240-47133739:-|nuORF	nc|ENSG00000123472|Q5TC12-2|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.7944946289062	2	568.82115	1135.62775	0.68813	0.00039142	-1.4956	-0.00085075	-0.80751	-0.00045933	568.8202480534761	56.498	0.61013	56.577	56.273	56.883	0.078674					51	22	3	0	0	0	0.16799	1	13580	13580		59.368	30.287	1	3739700			56031	3106	32188	32189	68432	68432					0.06535773171231085
VYAVIPAEKF	10	Unmodified	_VYAVIPAEKF_					0	0	0		nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1;ENST00000474020.5_1_1:47118240-47133739:-|nuORF	nc|ENSG00000123472|Q5TC12-2|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	568.82115	1135.62775	0.3963	0.00022543	-1.3899	-0.00079062	-0.99362	-0.00056519	568.8203137082005	56.613	0.72552	56.613	56.212	56.937	0	0.007088	-2.2122E-06	NaN	76.825	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3611000			56032	3106	32188	32189							0.06535773171231085
VYAVIPAEKF	10	Unmodified	_VYAVIPAEKF_					0	0	0		nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1;ENST00000474020.5_1_1:47118240-47133739:-|nuORF	nc|ENSG00000123472|Q5TC12-2|ATPAF1	nc|ENSG00000123472|Q5TC12-2|ATPAF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	568.82115	1135.62775	0.89787	0.00051073	-1.3335	-0.00075851	-0.43561	-0.00024778	568.8201479371884	56.648	0.59409	56.629	56.326	56.92	-0.019081	0.022323	6.2007E-05	NaN	76.825	78	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3898100			56033	3106	32188	32189							0.06535773171231085
VYCFQYFE	8	Unmodified	_VYCFQYFE_					0	0	0			REV__TAX1BP1|p.N620Kfs*18|1|0.35|ENSG00000106052|chr7:27816439-27816440|-/A|frameshift_variant	REV__TAX1BP1|p.N620Kfs*18|1|0.35|ENSG00000106052|chr7:27816439-27816440|-/A|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7476806640625	2	549.733686	1097.45282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.587	1	37.587	37.087	38.087	0								0	0	0	0.35251	1	7755	7755		13.508	0.46542	1		+		56034	14506	32189	32190	68433	68433					-0.09200969965445438
VYCFQYFE	8	Unmodified	_VYCFQYFE_					0	0	0			REV__TAX1BP1|p.N620Kfs*18|1|0.35|ENSG00000106052|chr7:27816439-27816440|-/A|frameshift_variant	REV__TAX1BP1|p.N620Kfs*18|1|0.35|ENSG00000106052|chr7:27816439-27816440|-/A|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7476806640625	2	549.733686	1097.45282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.431	1	37.524	37.024	38.024	0.093018								0	0	0	0.35251	1	7699	7699		13.508	0.97634	1		+		56035	14506	32189	32190	68434	68434					-0.09200969965445438
VYDDTGPL	8	Unmodified	_VYDDTGPL_					0	0	0			REV__nc|ENSG00000122136|Q9NY56-2|OBP2A	REV__nc|ENSG00000122136|Q9NY56-2|OBP2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.7946472167969	2	440.208358	878.402163	0.054868	2.4153E-05	-0.55991	-0.00024648	-0.50504	-0.00022232	440.20801735552664	59.261	0.27872	59.353	59.238	59.517	0.091301					14	9	2	0	0	0	0.34185	1	14440	14440		10.183	0	1	85841	+		56036	15149	32190	32191	68435	68435					-0.04190176018812508
VYDDTGPL	8	Unmodified	_VYDDTGPL_					0	0	0			REV__nc|ENSG00000122136|Q9NY56-2|OBP2A	REV__nc|ENSG00000122136|Q9NY56-2|OBP2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.79461669921875	2	440.208358	878.402163	0.29135	0.00012825	-0.17934	-7.8948E-05	0.11201	4.9306E-05	440.20821408676636	59.357	0.34386	59.343	59.222	59.566	-0.014267					17	11	2	0	0	0	0.33995	1	14494	14494		10.183	0.83596	1	115830	+		56037	15149	32190	32191	68436	68436					-0.04190176018812508
VYDELFYTL	9	Unmodified	_VYDELFYTL_					0	0	0		ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.7875366210938	2	581.786973	1161.55939	0.52561	0.00030579	0.18881	0.00010985	0.71442	0.00041564	581.787071213962	84.586	0.59249	84.586	84.278	84.871	0					51	21	3	0	0	0	0.0022761	2	22186	22137;22186		108	61.976	1	610190			56038	1857	32191	32192	68437;68438	68438					-0.014925161992778158
VYDELFYTL	9	Unmodified	_VYDELFYTL_					0	0	0		ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.787353515625	2	581.786973	1161.55939	0.52329	0.00030444	0.35306	0.0002054	0.87635	0.00050985	581.7871272013226	84.437	0.60642	84.514	84.247	84.853	0.077095					56	23	3	0	0	0	0.0037552	1	22169	22169		96.285	50.264	1	693640			56039	1857	32191	32192	68439	68439					-0.014925161992778158
VYDELFYTL	9	Unmodified	_VYDELFYTL_					0	0	0		ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.7870483398438	2	581.786973	1161.55939	0.51888	0.00030188	0.35845	0.00020854	0.87733	0.00051042	581.7871058301049	84.564	0.55283	84.551	84.283	84.836	-0.01284					51	21	3	0	0	0	0.006189	2	22130	22130;22178		85.272	47.298	1	608290			56040	1857	32191	32192	68440;68441	68440					-0.014925161992778158
VYDELFYTL	9	Unmodified	_VYDELFYTL_					0	0	0		ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	581.786973	1161.55939	0.51588	0.00030013	-6.3875	-0.0037162	-5.8717	-0.0034161	582.2826530936325	84.864	0.11829	84.945	84.857	84.975	0.080887	0.17959	-0.007633	NaN	108	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119070			56041	1857	32191	32192							-0.014925161992778158
VYDGKFAIF	9	Unmodified	_VYDGKFAIF_					0	0	0		nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-2|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	nc|ENSG00000065361|P21860-4|ERBB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.279052734375	2	530.279118	1058.54368	0.50444	0.00026749	-0.33034	-0.00017517	0.1741	9.232E-05	530.2789030384932	62.608	0.63638	62.599	62.302	62.938	-0.0085526					54	23	3	0	0	0	0.1558	1	15466	15466		34.932	15.493	1	662230			56042	813	32192	32193	68442	68442					0.016752420743159746
VYDGLLTFGF	10	Unmodified	_VYDGLLTFGF_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.8157958984375	2	566.289682	1130.56481	0.49499	0.00028031	-1.3834	-0.0007834	-0.8884	-0.00050309	566.2890621104773	84.623	0.46539	84.623	84.405	84.871	0					26	16	2	0	0	0	0.3156	1	22234	22234		10.824	0	1	142450	+		56043	13717	32193	32194	68443	68443					0.00475207383169618
VYDITRRETF	10	Unmodified	_VYDITRRETF_					0	0	0		nc|ENSG00000129472|Q8WUD1-2|RAB2B;ENSG00000129472|ENST00000397762|RAB2B	nc|ENSG00000129472|Q8WUD1-2|RAB2B	nc|ENSG00000129472|Q8WUD1-2|RAB2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.8945007324219	3	433.894577	1298.6619	0.18854	8.1805E-05	-0.49479	-0.00021469	-0.30625	-0.00013288	433.89437046243205	40.321	0.54193	40.414	40.176	40.718	0.09267					38	19	3	0	0	0	0.34535	1	8608	8608		13.519	8.116	1	464020			56044	3426	32194	32195	68444	68444					0.024515695921763836
VYDITRRETF	10	Unmodified	_VYDITRRETF_					0	0	0		nc|ENSG00000129472|Q8WUD1-2|RAB2B;ENSG00000129472|ENST00000397762|RAB2B	nc|ENSG00000129472|Q8WUD1-2|RAB2B	nc|ENSG00000129472|Q8WUD1-2|RAB2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.8944091796875	3	433.894577	1298.6619	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.339	1	40.438	39.938	40.938	0.099407								0	0	0	0.35308	1	8587	8587		13.519	1.3439	1				56045	3426	32194	32195	68445	68445					0.024515695921763836
VYDITRRETF	10	Unmodified	_VYDITRRETF_					0	0	0		nc|ENSG00000129472|Q8WUD1-2|RAB2B;ENSG00000129472|ENST00000397762|RAB2B	nc|ENSG00000129472|Q8WUD1-2|RAB2B	nc|ENSG00000129472|Q8WUD1-2|RAB2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	433.894577	1298.6619	-0.033693	-1.4619E-05	-0.16738	-7.2623E-05	-0.20107	-8.7242E-05	433.8944643957337	40.713	0.62622	40.713	40.36	40.986	0	0.14931	0.00018047	NaN	13.519	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383670			56046	3426	32194	32195							0.024515695921763836
VYDMVVRGN	9	Unmodified	_VYDMVVRGN_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7634887695312	2	526.763309	1051.51206	0.6166	0.0003248	-0.058063	-3.0586E-05	0.55853	0.00029421	526.7630242301434	66.134	0.8497	66.218	65.86	66.71	0.083832					77	30	3	0	0	0	0.28674	1	16502	16502		10.824	1.4765	1	987610			56047	1398	32195	32196	68446	68446					-0.011630739512611399
VYDNYIFWS	9	Unmodified	_VYDNYIFWS_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.7802124023438	2	603.776939	1205.53933	0.85732	0.00051763	1.3378	0.00080771	2.1951	0.0013253	603.7798829567413	55.865	0.90943	55.865	55.274	56.184	0					77	32	4	0	0	0	0.15219	1	13302	13302		30.637	1.555	1	2081900			56048	6294	32196	32197	68447	68447					-0.05522267139258474
VYDNYIFWS	9	Unmodified	_VYDNYIFWS_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.7804565429688	2	603.776939	1205.53933	0.82822	0.00050006	2.1884	0.0013213	3.0166	0.0018214	603.7797748524973	55.655	0.74018	55.725	55.422	56.162	0.070885					88	26	4	0	0	0	0.15219	1	13328	13328		30.637	0	1	2276700			56049	6294	32196	32197	68448	68448					-0.05522267139258474
VYDNYIFWS	9	Unmodified	_VYDNYIFWS_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.289794921875	2	603.776939	1205.53933	0.4464	0.00026953	1.021	0.00061645	1.4674	0.00088598	603.7775388256466	67.137	0.28568	67.215	67.04	67.326	0.078041					14	9	2	0	0	0	0.25417	1	16837	16837		8.5933	8.5933	1	56665			56050	6294	32196	32197	68449	68449					-0.05522267139258474
VYDNYQNW	8	Unmodified	_VYDNYQNW_					0	0	0		ENSG00000197980|ENST00000356539|LEKR1;ENST00000470811.5_1_3:156544101-156697065:+|nuORF	ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8529663085938	2	551.235439	1100.45632	0.52067	0.00028701	-0.12245	-6.7497E-05	0.39822	0.00021951	551.2352135930995	51.335	0.51026	51.335	51.108	51.619	0					41	18	3	0	0	0	0.34131	1	11977	11977		12.532	12.532	1	567600			56051	8021	32197	32198	68450	68450					-0.08988583867244415
VYDNYQNW	8	Unmodified	_VYDNYQNW_					0	0	0		ENSG00000197980|ENST00000356539|LEKR1;ENST00000470811.5_1_3:156544101-156697065:+|nuORF	ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8529052734375	2	551.235439	1100.45632	0.45245	0.0002494	0.088452	4.8758E-05	0.5409	0.00029816	551.2353366755169	51.317	0.45245	51.364	51.142	51.595	0.046574					40	16	3	0	0	0	0.34131	1	11958	11958		12.532	12.532	1	922280			56052	8021	32197	32198	68451	68451					-0.08988583867244415
VYDNYQNW	8	Unmodified	_VYDNYQNW_					0	0	0		ENSG00000197980|ENST00000356539|LEKR1;ENST00000470811.5_1_3:156544101-156697065:+|nuORF	ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	551.235439	1100.45632	0.41997	0.0002315	0.067255	3.7073E-05	0.48723	0.00026858	551.2352839865487	51.514	0.63869	51.524	51.22	51.859	0.0095634	0.11632	4.1987E-05	NaN	12.532	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	929640			56053	8021	32197	32198							-0.08988583867244415
VYDPLFSQL	9	Unmodified	_VYDPLFSQL_					0	0	0		ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2820434570312	2	541.281857	1080.54916	0.55239	0.000299	0.15502	8.3911E-05	0.70742	0.00038291	541.2818757614931	79.512	0.97252	79.512	79.205	80.177	0					84	36	3	0	0	0	0.001957	1	20615	20615		110.55	74.426	1	2364000			56054	1532	32198	32199	68452	68452					0.012109208661286175
VYDPLFSQL	9	Unmodified	_VYDPLFSQL_					0	0	0		ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2820434570312	2	541.281857	1080.54916	0.58294	0.00031554	0.095716	5.1809E-05	0.67866	0.00036735	541.2818377429334	79.455	1.0586	79.516	79.201	80.26	0.061409					95	42	3	0	0	0	0.017549	1	20656	20656		67.838	47.385	1	2377300			56055	1532	32198	32199	68453	68453					0.012109208661286175
VYDPLFSQL	9	Unmodified	_VYDPLFSQL_					0	0	0		ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	541.281857	1080.54916	0.67424	0.00036495	0.092178	4.9894E-05	0.76642	0.00041485	541.2817977440294	79.556	1.1113	79.527	79.207	80.318	-0.028931	0.0084054	-2.4398E-05	NaN	110.55	82	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2227700			56056	1532	32198	32199							0.012109208661286175
VYDPRNEQW	9	Unmodified	_VYDPRNEQW_					0	0	0			REV__nc|ENSG00000086991|Q9NPH5-3|NOX4	REV__nc|ENSG00000086991|Q9NPH5-3|NOX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.780029296875	2	603.780544	1205.54654	0.65306	0.00039431	-1.4242	-0.00085989	-0.77112	-0.00046559	603.7797881244122	55.84	0.77891	55.821	55.46	56.239	-0.019077					62	28	4	0	0	0	0.1939	1	13326	13326		30.637	1.555	1	1768700	+		56057	13982	32199	32200	68454	68454					-0.048015345388193964
VYDPSLKTLL	10	Unmodified	_VYDPSLKTLL_					0	0	0		nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.2681274414062	2	574.831714	1147.64888	0.031683	1.8212E-05	-0.88276	-0.00050744	-0.85108	-0.00048923	574.8311408580213	61.289	0.54327	61.289	61.08	61.623	0					44	20	3	0	0	0	0.27655	1	15024	15024		24.882	15.498	1	724050			56058	727	32200	32201	68455	68455					0.0809573848009677
VYDPSLKTLL	10	Unmodified	_VYDPSLKTLL_					0	0	0		nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2684326171875	2	574.831714	1147.64888	0.12506	7.1888E-05	-1.1826	-0.00067982	-1.0576	-0.00060793	574.8311287033968	61.2	0.47539	61.297	61.116	61.592	0.096989					35	17	3	0	0	0	0.30504	1	14989	14989		16.566	8.9569	1	755760			56059	727	32200	32201	68456	68456					0.0809573848009677
VYDPSLKTLL	10	Unmodified	_VYDPSLKTLL_					0	0	0		nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.2681274414062	2	574.831714	1147.64888	0.064389	3.7013E-05	-0.7027	-0.00040393	-0.63831	-0.00036692	574.831319339605	61.252	0.50632	61.243	61.046	61.552	-0.0094566					41	18	3	0	0	0	0.24335	1	15027	15027		34.222	18.073	1	808600			56060	727	32200	32201	68457	68457					0.0809573848009677
VYDQSQFNP	9	Unmodified	_VYDQSQFNP_					0	0	0			REV__ENSG00000112234|ENST00000369244|FBXL4	REV__ENSG00000112234|ENST00000369244|FBXL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2794799804688	2	549.248546	1096.48254	0.47625	0.00026158	2.6001	0.0014281	3.0763	0.0016897	549.2517589441339	72.41	2.1263	72.41	71.612	73.738	0					143	77	3	0	0	0	0.22596	1	18845	18845		21.747	5.8995	1	302500	+		56061	14764	32201	32202	68458	68458					-0.06184314695747162
VYDQYFITL	9	Unmodified	_VYDQYFITL_					0	0	0		ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2	ENSG00000143515|ENST00000368489|ATP8B2	ENSG00000143515|ENST00000368489|ATP8B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.784912109375	2	581.294965	1160.57538	0.11623	6.7566E-05	4.1238	0.0023972	4.24	0.0024647	581.2970680415655	81.875	0.31417	81.944	81.73	82.045	0.068993					23	13	3	0	0	0	0.2524	1	21335	21335		7.609	0.97858	1	124790			56062	4525	32202	32203	68459	68459					0.0015119003760446503
VYDSQEWF	8	Unmodified	_VYDSQEWF_					0	0	0			REV__ENSG00000147697|ENST00000276708|GSDMC	REV__ENSG00000147697|ENST00000276708|GSDMC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.995361328125	2	537.232364	1072.45018	0.48259	0.00025926	0.26805	0.00014401	0.75064	0.00040327	537.2323529115162	97.905	0.89242	97.898	97.426	98.318	-0.0068283					210	101	3	0	0	0	0.34218	1	26260	26260		5.2307	0	1	655860	+		56063	16403	32203	32204	68460	68460					-0.08315102098777061
VYDTFVKPDN	10	Unmodified	_VYDTFVKPDN_					0	0	0		ENSG00000079313|ENST00000170168|REXO1;ENST00000586291.1_1_19:1816366-1816758:-|nuORF;nc|ENSG00000205176|Q8IX06|REXO1L1P	ENSG00000079313|ENST00000170168|REXO1	ENSG00000079313|ENST00000170168|REXO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.7415161132812	2	599.292953	1196.57135	0.31866	0.00019097	0.14445	8.6565E-05	0.46311	0.00027754	599.2929404623577	52.709	0.38069	52.708	52.548	52.929	-0.00081253					23	13	2	0	0	0	0.31847	1	12435	12435		6.7232	0	1	471230			56064	1130	32204	32205	68461	68461					-0.019068994560939245
VYDTNPAKF	9	Unmodified	_VYDTNPAKF_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.7643432617188	2	527.763832	1053.51311	0.53668	0.00028324	0.7345	0.00038764	1.2712	0.00067088	527.7639463438842	38.063	0.53084	38.063	37.846	38.377	0					46	18	3	0	0	0	0.0024096	1	7904	7904		106.94	53.365	1	774440			56065	4236	32205	32206	68462	68462					-0.011505363107289668
VYDTNPAKF	9	Unmodified	_VYDTNPAKF_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7640380859375	2	527.763832	1053.51311	0.49413	0.00026078	0.29651	0.00015649	0.79064	0.00041727	527.7637729908776	37.991	0.47126	38.081	37.849	38.32	0.090881					46	16	3	0	0	0	0.00045155	1	7893	7893		129.77	74.999	1	792990			56066	4236	32205	32206	68463	68463					-0.011505363107289668
VYDTNPAKF	9	Unmodified	_VYDTNPAKF_					0	0	0		ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	ENSG00000139433|ENST00000318348|GLTP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7640991210938	2	527.763832	1053.51311	0.45261	0.00023887	0.44055	0.00023251	0.89316	0.00047138	527.7637803374721	37.921	0.55274	38.018	37.768	38.32	0.097527					53	19	3	0	0	0	0.00078391	1	7857	7857		125.53	79.508	1	684470			56067	4236	32205	32206	68464	68464					-0.011505363107289668
VYDTVFKHF	9	Unmodified	_VYDTVFKHF_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.2953491210938	2	578.295299	1154.57605	0.51188	0.00029602	-0.10963	-6.3401E-05	0.40224	0.00023262	578.295111539489	47.502	0.82218	47.502	47.137	47.959	0					87	29	5	0	0	0	0.0013683	2	10793	10752;10793		118.07	65.8	1	3639100			56068	7531	32206	32207	68465;68466	68466					0.004940294773177811
VYDTVFKHF	9	Unmodified	_VYDTVFKHF_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2954711914062	2	578.295299	1154.57605	0.39339	0.0002275	-0.013224	-7.6471E-06	0.38017	0.00021985	578.2951418492926	47.355	0.67253	47.407	47.168	47.841	0.052574					78	24	4	0	0	0	0.00045155	3	10758	10712;10758;10839		129.77	77.504	1	3868900			56069	7531	32206	32207	68467;68468;68469	68468					0.004940294773177811
VYDTVFKHF	9	Unmodified	_VYDTVFKHF_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.2954711914062	2	578.295299	1154.57605	0.76145	0.00044034	-0.3005	-0.00017378	0.46095	0.00026657	578.2949821187918	47.386	0.63964	47.44	47.196	47.835	0.054375					83	23	5	0	0	0	0.00045155	3	10768	10699;10721;10768		129.77	77.504	1	4012500			56070	7531	32206	32207	68470;68471;68472	68472					0.004940294773177811
VYDTVVITL	9	Unmodified	_VYDTVVITL_					0	0	0		ENSG00000185010|ENST00000360256|F8	ENSG00000185010|ENST00000360256|F8	ENSG00000185010|ENST00000360256|F8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2794189453125	2	511.792058	1021.56956	0.5632	0.00028824	-2.5823	-0.0013216	-2.0191	-0.0010333	511.7919421456931	75.003	0.36259	75.003	74.765	75.128	0					24	12	2	0	0	0	0.15219	1	19227	19227		30.637	5.2372	1	117970			56071	7496	32207	32208	68473	68473					0.0596409152593651
VYDVVELKF	9	Unmodified	_VYDVVELKF_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7;CPSF7|p.N207Mfs*23|1|0.06|ENSG00000149532|chr11:61416435-61416450|GATGAGGGTACAAGGT/-|frameshift_variant	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3057250976562	2	556.305332	1110.59611	0.37919	0.00021095	-0.28521	-0.00015866	0.093983	5.2283E-05	556.3052722008591	66.668	0.99888	66.668	66.369	67.368	0					130	34	5	0	0	0	0.0013924	2	16694	16694;16834		117.76	60.039	1	12212000			56072	4873	32208	32209	68474;68475	68474					0.0452378041729844
VYDVVELKF	9	Unmodified	_VYDVVELKF_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7;CPSF7|p.N207Mfs*23|1|0.06|ENSG00000149532|chr11:61416435-61416450|GATGAGGGTACAAGGT/-|frameshift_variant	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3055419921875	2	556.305332	1110.59611	0.34941	0.00019438	-0.22465	-0.00012497	0.12476	6.9406E-05	556.3052967234208	66.531	1.0052	66.615	66.327	67.332	0.083832					132	35	5	0	0	0	3.6949E-07	1	16651	16651		165.72	86.124	1	11950000			56073	4873	32208	32209	68476	68476					0.0452378041729844
VYDVVELKF	9	Unmodified	_VYDVVELKF_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7;CPSF7|p.N207Mfs*23|1|0.06|ENSG00000149532|chr11:61416435-61416450|GATGAGGGTACAAGGT/-|frameshift_variant	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3056640625	2	556.305332	1110.59611	0.14352	7.9841E-05	-0.022258	-1.2382E-05	0.12126	6.7459E-05	556.3053931093923	66.662	0.97226	66.649	66.353	67.325	-0.013588					120	34	5	0	0	0	0.00010125	1	16687	16687		140.63	74.176	1	10426000			56074	4873	32208	32209	68477	68477					0.0452378041729844
VYDWKNSRP	9	Unmodified	_VYDWKNSRP_					0	0	0			REV__nc|ENSG00000145332|Q9P2G9-2|KLHL8	REV__nc|ENSG00000145332|Q9P2G9-2|KLHL8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.2667236328125	2	582.793455	1163.57236	0.29056	0.00016934	-0.28931	-0.00016861	0.0012481	7.2738E-07	583.2948588748918	70.761	0.083374	70.822	70.772	70.855	0.060783					4	2	2	0	0	0	0.2451	1	17932	17932		15.847	1.0089	1	64310	+		56075	16288	32209	32210	68478	68478					-0.002886402965259549
VYEAIFAML	9	Oxidation (M)	_VYEAIFAM(Oxidation (M))L_		VYEAIFAM(1)L		VYEAIFAM(85)L	0	0	1		ENSG00000186951|ENST00000407236|PPARA	ENSG00000186951|ENST00000407236|PPARA	ENSG00000186951|ENST00000407236|PPARA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.7728271484375	2	536.772811	1071.53107	0.49728	0.00026693	-0.27745	-0.00014893	0.21983	0.000118	536.7724424103176	79.734	0.97765	79.734	79.411	80.389	0					102	36	4	0	0	0	0.0061338	1	20757	20757		85.357	53.051	1	762620			56076	7656	32210	32211	68479	68479		843			-0.0018353738023506594
VYEAIFAML	9	Oxidation (M)	_VYEAIFAM(Oxidation (M))L_		VYEAIFAM(1)L		VYEAIFAM(85)L	0	0	1		ENSG00000186951|ENST00000407236|PPARA	ENSG00000186951|ENST00000407236|PPARA	ENSG00000186951|ENST00000407236|PPARA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.7726440429688	2	536.772811	1071.53107	0.39558	0.00021234	0.19911	0.00010687	0.59469	0.00031921	536.7725314535381	79.797	1.0452	79.858	79.418	80.463	0.061417					85	39	3	0	0	0	0.0061338	3	20680	20631;20680;20733		85.357	53.051	1	803410			56077	7656	32210	32211	68480;68481;68482	68481		843			-0.0018353738023506594
VYEAIFAML	9	Oxidation (M)	_VYEAIFAM(Oxidation (M))L_		VYEAIFAM(1)L		VYEAIFAM(57)L	0	0	1		ENSG00000186951|ENST00000407236|PPARA	ENSG00000186951|ENST00000407236|PPARA	ENSG00000186951|ENST00000407236|PPARA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7724609375	2	536.772811	1071.53107	0.51662	0.00027731	-0.1803	-9.678E-05	0.33632	0.00018053	536.772386922331	80.009	0.87488	79.98	79.471	80.346	-0.028923					70	31	3	0	0	0	0.037693	1	20673	20673		57.471	25.354	1	550280			56078	7656	32210	32211	68483	68483		843			-0.0018353738023506594
VYEDLIQEL	9	Unmodified	_VYEDLIQEL_					0	0	0		ENST00000482537.1_1_9:77676466-77681784:-|nuORF;ENST00000494066.1_1_9:77676466-77684110:-|nuORF;nc|ENSG00000106733|Q9NWW6-2|NMRK1;ENSG00000106733|ENST00000361092|NMRK1	ENST00000482537.1_1_9:77676466-77681784:-|nuORF	ENST00000482537.1_1_9:77676466-77681784:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2894287109375	2	561.289879	1120.56521	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.29	1	76.29	75.79	76.79	0								0	0	0	0.081574	1	19639	19639		51.415	3.8208	1				56079	2098	32211	32212	68484	68484					0.009745823123921582
VYEEILHQI	9	Unmodified	_VYEEILHQI_					0	0	0		ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3065185546875	2	572.305864	1142.59717	0.36779	0.00021049	0.33612	0.00019236	0.70391	0.00040285	572.3061087754662	57.402	0.43663	57.402	57.116	57.552	0					41	15	3	0	0	0	0.0016712	1	13829	13829		114.2	80.099	1	624310			56080	3911	32212	32213	68485	68485					0.031579947861928304
VYEEILHQI	9	Unmodified	_VYEEILHQI_					0	0	0		ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.3060302734375	2	572.305864	1142.59717	0.36686	0.00020996	-0.059541	-3.4076E-05	0.30732	0.00017588	572.3059529254465	57.163	0.47453	57.242	56.983	57.458	0.078671					45	16	4	0	0	0	0.0013683	1	13772	13772		118.07	87.432	1	888210			56081	3911	32212	32213	68486	68486					0.031579947861928304
VYEEILHQI	9	Unmodified	_VYEEILHQI_					0	0	0		ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2689208984375	2	572.305864	1142.59717	0.099695	5.7056E-05	0.86247	0.0004936	0.96217	0.00055065	572.3064368263334	57.419	0.54535	57.402	57.144	57.69	-0.0172					43	19	3	0	0	0	0.0056456	1	13824	13824		103.42	74.933	1	820840			56082	3911	32212	32213	68487	68487					0.031579947861928304
VYEEQINIL	9	Unmodified	_VYEEQINIL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.7977905273438	2	560.797872	1119.58119	0.2518	0.00014121	0.95928	0.00053796	1.2111	0.00067917	560.7974569237654	67.208	0.74204	67.208	66.768	67.51	0					37	25	2	0	0	0	0.13748	1	16845	16845		32.786	7.3864	1	187580			56083	6167	32213	32214	68488	68488					0.02618288549274439
VYEEQINIL	9	Unmodified	_VYEEQINIL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.797872	1119.58119	0.29842	0.00016735	-0.035615	-1.9973E-05	0.2628	0.00014738	560.797370177295	67.016	0.42542	67.099	66.877	67.302	0.083832	-0.021637	-0.0004991	NaN	32.786	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198970			56084	6167	32213	32214							0.02618288549274439
VYEEVSEALE	10	Unmodified	_VYEEVSEALE_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.7449340820312	2	584.274426	1166.5343	0.43353	0.0002533	3.1871	0.0018621	3.6206	0.0021154	584.2760800954385	64.371	0.3764	64.464	64.284	64.66	0.09288					19	13	2	0	0	0	0.3156	1	15975	15975		10.824	0	1	153220	+		56085	17183	32214	32215	68489	68489					-0.042306157924940635
VYEFNIIF	8	Unmodified	_VYEFNIIF_					0	0	0			REV__nc|ENSG00000184611|Q9NS40-2|KCNH7	REV__nc|ENSG00000184611|Q9NS40-2|KCNH7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.3037109375	2	522.773668	1043.53278	0.46509	0.00024314	-3.5228	-0.0018416	-3.0577	-0.0015985	522.7719420612269	81.845	0.39336	81.845	81.631	82.024	0					26	15	2	0	0	0	0.32886	1	21330	21330		21.747	1.293	1	77625	+		56086	18325	32215	32216	68490	68490					0.012758397000425248
VYEFNIIF	8	Unmodified	_VYEFNIIF_					0	0	0			REV__nc|ENSG00000184611|Q9NS40-2|KCNH7	REV__nc|ENSG00000184611|Q9NS40-2|KCNH7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3035278320312	2	522.773668	1043.53278	0.47211	0.00024681	-2.9607	-0.0015478	-2.4886	-0.001301	522.7719043655163	81.876	0.49889	81.852	81.583	82.082	-0.024048					27	20	2	0	0	0	0.32886	1	21294	21294		21.747	5.8995	1	103140	+		56087	18325	32215	32216	68491	68491					0.012758397000425248
VYEFQYIHN	9	Unmodified	_VYEFQYIHN_					0	0	0			REV__nc|ENSG00000128578|Q9ULQ0-2|STRIP2	REV__nc|ENSG00000128578|Q9ULQ0-2|STRIP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.5668640136719	3	404.860984	1211.56112	-0.35511	-0.00014377	2.4706	0.0010003	2.1155	0.00085649	405.1954581810959	29.917	0.52237	29.931	29.684	30.207	0.013474					26	17	3	0	0	0	0.25689	1	5369	5369		7.609	4.6137	1	73687	+		56088	15376	32216	32217	68492	68492					-0.03619462390656736
VYEGITFEDF	10	Unmodified	_VYEGITFEDF_					0	0	0		nc|ENSG00000088992|Q96BS2-3|TESC;ENSG00000088992|ENST00000335209|TESC	nc|ENSG00000088992|Q96BS2-3|TESC	nc|ENSG00000088992|Q96BS2-3|TESC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.2785034179688	2	610.279512	1218.54447	0.60886	0.00037157	-2.4904	-0.0015198	-1.8815	-0.0011483	610.2777081877405	54.326	0.48857	54.326	54.162	54.651	0					36	17	3	0	0	0	0.15638	1	12908	12908		37.974	3.0419	1	706960			56089	1338	32217	32218	68493	68493					-0.056060080672978074
VYEGITFEDF	10	Unmodified	_VYEGITFEDF_					0	0	0		nc|ENSG00000088992|Q96BS2-3|TESC;ENSG00000088992|ENST00000335209|TESC	nc|ENSG00000088992|Q96BS2-3|TESC	nc|ENSG00000088992|Q96BS2-3|TESC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.7798461914062	2	610.279512	1218.54447	0.58611	0.00035769	-2.7896	-0.0017024	-2.2035	-0.0013448	610.7792260119244	54.252	0.5242	54.316	54.142	54.667	0.063202					32	19	2	0	0	0	0.15638	1	12885	12885		37.974	5.9365	1	800420			56090	1338	32217	32218	68494	68494					-0.056060080672978074
VYEGITFEDF	10	Unmodified	_VYEGITFEDF_					0	0	0		nc|ENSG00000088992|Q96BS2-3|TESC;ENSG00000088992|ENST00000335209|TESC	nc|ENSG00000088992|Q96BS2-3|TESC	nc|ENSG00000088992|Q96BS2-3|TESC	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	610.279512	1218.54447	0.55944	0.00034141	-3.005	-0.0018339	-2.4456	-0.0014925	610.2771837722311	54.679	0.51075	54.663	54.361	54.872	-0.015923	0.22798	-0.00030761	NaN	37.974	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	728980			56091	1338	32217	32218							-0.056060080672978074
VYEGPELNHAF	11	Unmodified	_VYEGPELNHAF_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.8372802734375	2	638.303852	1274.59315	0.5545	0.00035394	-0.15651	-9.9904E-05	0.39799	0.00025404	638.3034343809754	51.33	0.50262	51.376	51.092	51.595	0.046577					40	18	3	0	0	0	0.29252	1	12019	12019		28.495	14.089	1	414820			56092	3102	32218	32219	68495	68495					-0.03316094707543016
VYEGPELNHAF	11	Unmodified	_VYEGPELNHAF_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	638.303852	1274.59315	0.49498	0.00031595	-0.24933	-0.00015915	0.24565	0.0001568	638.3037633380485	51.363	0.45533	51.363	51.081	51.536	0	-0.039571	-8.923E-05	NaN	28.495	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324070			56093	3102	32218	32219							-0.03316094707543016
VYEGPELNHAF	11	Unmodified	_VYEGPELNHAF_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	638.303852	1274.59315	0.6279	0.00040079	-0.037822	-2.4142E-05	0.59007	0.00037665	638.3038545343813	51.459	0.49688	51.469	51.169	51.666	0.0095634	0.066115	0.00018078	NaN	28.495	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472950			56094	3102	32218	32219							-0.03316094707543016
VYEKVEFET	9	Unmodified	_VYEKVEFET_					0	0	0			REV__ENSG00000125730|ENST00000245907|C3	REV__ENSG00000125730|ENST00000245907|C3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2693481445312	2	572.282054	1142.54956	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.177	1	57.177	56.677	57.677	0								0	0	0	0.22065	1	13781	13781		15.847	0.5987	1		+		56095	15281	32219	32220	68496	68496					-0.016017042046541974
VYELSAVLI	9	Unmodified	_VYELSAVLI_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.79473876953125	2	503.794601	1005.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.121	1	81.121	80.621	81.621	0								0	0	0	0.091794	1	21116	21116		48.346	3.9388	1				56096	1387	32220	32221	68497	68497					0.07208395388579447
VYELSAVLI	9	Unmodified	_VYELSAVLI_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.7951965332031	2	503.794601	1005.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.286	1	81.286	80.786	81.786	0								0	0	0	0.083439	1	21167	21167		50.855	6.448	1				56097	1387	32220	32221	68498	68498					0.07208395388579447
VYELSAVLI	9	Unmodified	_VYELSAVLI_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.79498291015625	2	503.794601	1005.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.071	1	81.136	80.636	81.636	0.065094								0	0	0	0.061409	1	21091	21091		57.471	3.8958	1				56098	1387	32220	32221	68499	68499					0.07208395388579447
VYELSAVLI	9	Unmodified	_VYELSAVLI_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.794677734375	2	503.794601	1005.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.106	1	81.171	80.671	81.671	0.065094								0	0	0	0.011588	1	21102	21102		77.984	24.409	1				56099	1387	32220	32221	68500	68500					0.07208395388579447
VYELSAVLI	9	Unmodified	_VYELSAVLI_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.794677734375	2	503.794601	1005.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.238	1	81.307	80.807	81.807	0.068993								0	0	0	0.14428	1	21143	21143		36.044	0	1				56100	1387	32220	32221	68501	68501					0.07208395388579447
VYELSAVLI	9	Unmodified	_VYELSAVLI_					0	0	0		nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	nc|ENSG00000090686|Q86UV5-2|USP48	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.7947998046875	2	503.794601	1005.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.312	1	81.288	80.788	81.788	-0.02404								0	0	0	0.091794	1	21158	21158		48.346	12.302	1				56101	1387	32220	32221	68502	68502					0.07208395388579447
VYEMMNNTEC	10	Unmodified	_VYEMMNNTEC_					0	0	0			REV__ENSG00000109220|ENST00000263921|CHIC2	REV__ENSG00000109220|ENST00000263921|CHIC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.5293273925781	3	411.824337	1232.45118	-0.17432	-7.179E-05	0.082747	3.4077E-05	-0.091575	-3.7713E-05	411.82514288298466	65.191	0.63908	65.18	64.947	65.586	-0.011337					54	23	4	0	0	0	0.31867	1	16223	16223		7.9454	1.7536	1	354730	+		56102	14634	32221	32222	68503	68503					-0.15574715108004966
VYEMMNNTEC	10	Unmodified	_VYEMMNNTEC_					0	0	0			REV__ENSG00000109220|ENST00000263921|CHIC2	REV__ENSG00000109220|ENST00000263921|CHIC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	411.824337	1232.45118	-0.35041	-0.00014431	0.10568	4.3523E-05	-0.24473	-0.00010079	411.8252285324568	65.178	0.60429	65.178	64.884	65.488	0	0.022553	0.00030276	NaN	7.9454	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384040	+		56103	14634	32221	32222							-0.15574715108004966
VYEMMNNTEC	10	Unmodified	_VYEMMNNTEC_					0	0	0			REV__ENSG00000109220|ENST00000263921|CHIC2	REV__ENSG00000109220|ENST00000263921|CHIC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.824337	1232.45118	-0.065947	-2.7158E-05	-0.6778	-0.00027913	-0.74374	-0.00030629	411.825076094209	65.02	0.50259	65.109	64.905	65.408	0.088882	-0.046549	-0.0006652	NaN	7.9454	59	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	434350	+		56104	14634	32221	32222							-0.15574715108004966
VYEMRDKLSG	10	Unmodified	_VYEMRDKLSG_					0	0	0		ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	ENSG00000170606|ENST00000304858|HSPA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.8030395507812	2	599.300255	1196.58596	0.32889	0.0001971	1.9538	0.0011709	2.2827	0.001368	599.3019757800342	22.656	0.91747	22.569	22.191	23.108	-0.08761					82	32	3	0	0	0	0.39935	1	3304	3304		3.5965	0.60125	1	195100			56105	6468	32222	32223	68504	68504					-0.004471505796118436
VYEMRSLLQ	9	Unmodified	_VYEMRSLLQ_					0	0	0			REV__nc|ENSG00000169118|Q9HCP0-2|CSNK1G1	REV__nc|ENSG00000169118|Q9HCP0-2|CSNK1G1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.8461303710938	2	569.799891	1137.58523	0.27862	0.00015876	0.65926	0.00037565	0.93788	0.0005344	569.8003405046492	32.56	0.5131	32.615	32.364	32.877	0.054371					29	18	2	0	0	0	0.25706	1	6270	6270		6.7232	0	1	166450	+		56106	17498	32223	32224	68505	68505					0.021940547713711567
VYEMRSLLQ	9	Unmodified	_VYEMRSLLQ_					0	0	0			REV__nc|ENSG00000169118|Q9HCP0-2|CSNK1G1	REV__nc|ENSG00000169118|Q9HCP0-2|CSNK1G1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.799891	1137.58523	0.46381	0.00026428	1.0095	0.00057519	1.4733	0.00083947	569.8001743952643	32.693	0.47303	32.693	32.338	32.811	0	0.059051	0.00024762	NaN	3.5965	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132990	+		56107	17498	32223	32224							0.021940547713711567
VYEMRSLLQ	9	Unmodified	_VYEMRSLLQ_					0	0	0			REV__nc|ENSG00000169118|Q9HCP0-2|CSNK1G1	REV__nc|ENSG00000169118|Q9HCP0-2|CSNK1G1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	569.799891	1137.58523	0.61013	0.00034765	0.84352	0.00048064	1.4537	0.00082829	569.800483720425	32.538	0.5248	32.594	32.233	32.758	0.055309	-0.040182	5.8513E-05	NaN	3.5965	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174110	+		56108	17498	32223	32224							0.021940547713711567
VYENLAFQK	9	Unmodified	_VYENLAFQK_					0	0	0		ENSG00000104804|ENST00000221399|TULP2	ENSG00000104804|ENST00000221399|TULP2	ENSG00000104804|ENST00000221399|TULP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2824096679688	2	556.292756	1110.57096	-0.027024	-1.5033E-05	0.91589	0.00050951	0.88887	0.00049447	556.2941671752172	39.466	0.80433	39.466	39.164	39.968	0					74	29	4	0	0	0	0.14076	1	8305	8305		32.305	4.6767	1	695080			56109	1916	32224	32225	68506	68506					0.020097256146982545
VYENLAFQK	9	Unmodified	_VYENLAFQK_					0	0	0		ENSG00000104804|ENST00000221399|TULP2	ENSG00000104804|ENST00000221399|TULP2	ENSG00000104804|ENST00000221399|TULP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2825317382812	2	556.292756	1110.57096	0.18256	0.00010156	0.72965	0.0004059	0.91221	0.00050746	556.2941307628618	39.369	0.78009	39.462	39.137	39.917	0.09267					65	27	3	0	0	0	0.088391	1	8283	8283		39.957	5.5556	1	865900			56110	1916	32224	32225	68507	68507					0.020097256146982545
VYENLAFQK	9	Unmodified	_VYENLAFQK_					0	0	0		ENSG00000104804|ENST00000221399|TULP2	ENSG00000104804|ENST00000221399|TULP2	ENSG00000104804|ENST00000221399|TULP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2825317382812	2	556.292756	1110.57096	0.29358	0.00016332	0.33512	0.00018643	0.6287	0.00034974	556.2939530130842	39.329	0.74047	39.429	39.128	39.868	0.099403					68	26	4	0	0	0	0.14076	1	8266	8266		32.305	4.6767	1	1032900			56111	1916	32224	32225	68508	68508					0.020097256146982545
VYENLNQQL	9	Unmodified	_VYENLNQQL_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.7861328125	2	560.785296	1119.55604	0.369	0.00020693	1.4712	0.00082504	1.8402	0.001032	560.7860368777384	70.623	0.38657	70.684	70.493	70.88	0.060783					32	13	3	0	0	0	0.079752	1	17911	17911		41.84	7.4379	1	688490	+		56112	17128	32225	32226	68509	68509					0.0010423374669699115
VYENLNQQL	9	Unmodified	_VYENLNQQL_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7862548828125	2	560.785296	1119.55604	0.33967	0.00019048	1.5148	0.00084951	1.8545	0.00104	560.7861700283665	70.705	0.4442	70.68	70.437	70.881	-0.024864					40	15	4	0	0	0	0.13748	1	17929	17929		32.786	0.4802	1	638610	+		56113	17128	32225	32226	68510	68510					0.0010423374669699115
VYENLNQQL	9	Unmodified	_VYENLNQQL_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.785296	1119.55604	0.369	0.00020693	1.4712	0.00082504	1.8402	0.001032	560.7860368777384	70.623	0.38657	70.684	70.493	70.88	0.060783	0.013361	7.4943E-05	NaN	41.84	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	688490	+		56114	17128	32225	32226							0.0010423374669699115
VYENVSHFL	9	Unmodified	_VYENVSHFL_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.2769165039062	2	554.277106	1106.53966	0.54424	0.00030166	-0.19784	-0.00010966	0.34639	0.000192	554.2768591506591	53.696	0.85434	53.696	53.414	54.268	0					80	31	4	0	0	0	3.0646E-11	2	12687	12687;12734		193.29	118.87	1	2333800			56115	5902	32226	32227	68511;68512	68511					-0.009348474193984657
VYENVSHFL	9	Unmodified	_VYENVSHFL_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.2770385742188	2	554.277106	1106.53966	0.22476	0.00012458	0.009905	5.4901E-06	0.23466	0.00013007	554.277029565602	53.682	0.80814	53.738	53.457	54.265	0.056255					77	30	4	0	0	0	2.4752E-08	2	12721	12664;12721		179.17	114.94	1	2669300			56116	5902	32226	32227	68513;68514	68514					-0.009348474193984657
VYENVSHFL	9	Unmodified	_VYENVSHFL_					0	0	0		ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	ENSG00000164933|ENST00000297578|SLC25A32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2769165039062	2	554.277106	1106.53966	0.41399	0.00022946	-0.21884	-0.0001213	0.19515	0.00010817	554.2768963348809	53.989	0.89376	53.973	53.656	54.55	-0.015923					81	31	4	0	0	0	3.0646E-11	2	12759	12759;12808		193.29	118.87	1	2511000			56117	5902	32226	32227	68515;68516	68515					-0.009348474193984657
VYENYSFEE	9	Unmodified	_VYENYSFEE_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.K2432Nfs*23|1|0.23|ENSG00000005810|chr13:77140155-77140155|T/-|frameshift_variant;MYCBP2|p.E3042Vfs*11|1|0.09|ENSG00000005810|chr13:77097915-77097916|-/GGGAAGA|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.8343505859375	2	590.245669	1178.47678	0.43791	0.00025847	-0.9462	-0.00055849	-0.50829	-0.00030002	590.2451207465834	71.448	0.72882	71.448	71.098	71.827	0					36	25	2	0	0	0	0.25879	1	18245	18245		4.756	1.4747	1	315130			56118	342	32227	32228	68517	68517					-0.10531457998104088
VYENYSFEE	9	Unmodified	_VYENYSFEE_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.K2432Nfs*23|1|0.23|ENSG00000005810|chr13:77140155-77140155|T/-|frameshift_variant;MYCBP2|p.E3042Vfs*11|1|0.09|ENSG00000005810|chr13:77097915-77097916|-/GGGAAGA|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	590.245669	1178.47678	0.36239	0.0002139	0.51207	0.00030224	0.87446	0.00051614	590.2453261390448	71.3	0.39986	71.361	71.117	71.517	0.060783	-0.030896	0.0014006	NaN	4.756	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369530			56119	342	32227	32228							-0.10531457998104088
VYENYSFEE	9	Unmodified	_VYENYSFEE_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.K2432Nfs*23|1|0.23|ENSG00000005810|chr13:77140155-77140155|T/-|frameshift_variant;MYCBP2|p.E3042Vfs*11|1|0.09|ENSG00000005810|chr13:77097915-77097916|-/GGGAAGA|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	590.245669	1178.47678	0.47481	0.00028025	0.35454	0.00020926	0.82934	0.00048952	590.2452306189106	71.393	0.47236	71.366	71.185	71.658	-0.027275	-0.025789	0.0012147	NaN	4.756	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375160			56120	342	32227	32228							-0.10531457998104088
VYERAVEFF	9	Unmodified	_VYERAVEFF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.810302734375	2	580.292756	1158.57096	0.33168	0.00019247	0.18608	0.00010798	0.51776	0.00030045	580.2927990854059	57.865	0.59466	57.951	57.714	58.308	0.085621					53	21	3	0	0	0	0.23235	1	13941	13941		21.537	12.944	1	774690			56121	1686	32228	32229	68518	68518					-0.0019827438529773644
VYERAVEFF	9	Unmodified	_VYERAVEFF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3350830078125	2	580.292756	1158.57096	0.55458	0.00032182	-0.096676	-5.6101E-05	0.45791	0.00026572	580.2926066733489	58.199	0.53917	58.181	57.928	58.467	-0.0172					62	19	5	0	0	0	0.24471	1	14170	14170		12.241	0	1	904770			56122	1686	32228	32229	68519	68519					-0.0019827438529773644
VYERAVEFF	9	Unmodified	_VYERAVEFF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	580.292756	1158.57096	0.28467	0.00016519	0.13076	7.5879E-05	0.41543	0.00024107	580.2927963630779	58.066	0.64469	58.066	57.768	58.413	0	0.00012938	6.961E-05	NaN	31.268	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	694440			56123	1686	32228	32229							-0.0019827438529773644
VYERELQTF	9	Unmodified	_VYERELQTF_					0	0	0		ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.80126953125	2	592.800946	1183.58734	0.5739	0.00034021	0.41757	0.00024754	0.99147	0.00058775	592.8010352972744	45.039	1.2038	45.039	44.684	45.888	0					133	43	6	0	0	0	3.4202E-05	3	10050	10002;10050;10129		151.48	89.878	1	3211700			56124	8187	32229	32230	68520;68521;68522	68521					0.0028880678080440703
VYERELQTF	9	Unmodified	_VYERELQTF_					0	0	0		ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.801513671875	2	592.800946	1183.58734	0.54216	0.00032139	0.14119	8.3696E-05	0.68335	0.00040509	592.8010510342485	44.743	1.1441	44.812	44.567	45.712	0.068569					97	40	3	0	0	0	8.5298E-05	3	9917	9917;9962;10027		143.21	93.659	1	3469300			56125	8187	32229	32230	68523;68524;68525	68523					0.0028880678080440703
VYERELQTF	9	Unmodified	_VYERELQTF_					0	0	0		ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.8016357421875	2	592.800946	1183.58734	0.57332	0.00033986	0.078409	4.6481E-05	0.65173	0.00038635	592.8009913826014	44.744	1.077	44.819	44.556	45.633	0.075047					90	39	3	0	0	0	1.3973E-05	3	9898	9898;9945;9994		154.75	105.2	1	3375600			56126	8187	32229	32230	68526;68527;68528	68526					0.0028880678080440703
VYEVKLLAY	9	Unmodified	_VYEVKLLAY_					0	0	0		ENSG00000174498|ENST00000327987|IGDCC3	ENSG00000174498|ENST00000327987|IGDCC3	ENSG00000174498|ENST00000327987|IGDCC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8526611328125	2	549.3157	1096.61685	0.15327	8.4194E-05	0.69348	0.00038094	0.84676	0.00046514	549.3161741724527	65.225	0.40208	65.214	64.996	65.398	-0.011337					25	14	2	0	0	0	0.24913	1	16277	16277		12.532	0.89125	1	179830			56127	6799	32230	32231	68529	68529					0.07240370796944262
VYEYVVERF	9	Unmodified	_VYEYVVERF_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.3059692382812	2	602.305864	1202.59717	1.1365	0.00068453	-0.1295	-7.7996E-05	1.007	0.00060653	602.3055153326306	56.053	1.6165	56.053	55.707	57.323	0					116	59	3	0	0	0	1.6536E-07	4	13433	13384;13433;13477;13579		173.69	135.51	1	6443100			56128	3803	32231	32232	68530;68531;68532;68533	68531					0.003979947861580513
VYEYVVERF	9	Unmodified	_VYEYVVERF_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.3059692382812	2	602.305864	1202.59717	0.97669	0.00058827	0.11129	6.7029E-05	1.088	0.0006553	602.3056288821599	55.975	1.6008	56.046	55.727	57.328	0.070889					113	59	4	0	0	0	5.4053E-05	3	13358	13358;13408;13454		148.27	113.87	1	4828100			56129	3803	32231	32232	68534;68535;68536	68534					0.003979947861580513
VYEYVVERF	9	Unmodified	_VYEYVVERF_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3063354492188	2	602.305864	1202.59717	0.93594	0.00056372	0.22994	0.00013849	1.1659	0.00070222	602.3057280857578	56.243	1.6686	56.224	55.884	57.553	-0.019081					132	60	4	0	0	0	4.984E-07	3	13484	13436;13484;13536		160.69	122.51	1	6984400			56130	3803	32231	32232	68537;68538;68539	68538					0.003979947861580513
VYFAVENVT	9	Unmodified	_VYFAVENVT_					0	0	0		ENST00000310441.11_1_X:153213093-153213690:-|nuORF	ENST00000310441.11_1_X:153213093-153213690:-|nuORF	ENST00000310441.11_1_X:153213093-153213690:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.3368530273438	2	521.266207	1040.51786	0.46232	0.00024099	-1.9877	-0.0010361	-1.5254	-0.00079513	521.2659564123109	58.999	0.25281	58.984	58.831	59.084	-0.014267					15	8	2	0	0	0	0.23147	1	14287	14287		13.508	0.46542	1	185640			56131	9310	32232	32233	68540	68540					-0.0007765216794268781
VYFDKALPI	9	Unmodified	_VYFDKALPI_					0	0	0			REV__ENSG00000076003|ENST00000264156|MCM6	REV__ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7947387695312	2	533.302593	1064.59063	0.51016	0.00027207	0.014549	7.7589E-06	0.52471	0.00027983	533.3026042183545	83.39	0.62939	83.466	83.242	83.872	0.075981					40	24	3	0	0	0	0.23007	1	21863	21863		19.257	1.1106	1	118160	+		56132	13822	32233	32234	68541	68541					0.060921016254724236
VYFDKALPI	9	Unmodified	_VYFDKALPI_					0	0	0			REV__ENSG00000076003|ENST00000264156|MCM6	REV__ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.794677734375	2	533.302593	1064.59063	0.67324	0.00035904	0.42047	0.00022424	1.0937	0.00058328	533.3027625184618	83.637	0.47667	83.621	83.246	83.723	-0.016823					31	19	2	0	0	0	0.16283	1	21889	21889		29.082	5.9332	1	147460	+		56133	13822	32233	32234	68542	68542					0.060921016254724236
VYFEKGKK	8	Unmodified	_VYFEKGKK_					0	0	0			REV__ENST00000472429.1_1_21:30971125-31311818:-|nuORF	REV__ENST00000472429.1_1_21:30971125-31311818:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7691345214844	2	499.78711	997.559667	0.3358	0.00016783	-0.87568	-0.00043765	-0.53988	-0.00026982	499.78665151924525	49.188	0.63401	49.233	48.906	49.54	0.044891					40	22	2	0	0	0	0.42077	1	11262	11262		15.847	1.2655	1	729300	+		56134	17626	32234	32235	68543	68543					0.060789483112330345
VYFFQLKFF	9	Unmodified	_VYFFQLKFF_					0	0	0			REV__ENST00000583039.1_1_17:8790786-8791804:-|nuORF	REV__ENST00000583039.1_1_17:8790786-8791804:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.5784606933594	3	413.558466	1237.65357	0.23949	9.9044E-05	-1.1383	-0.00047075	-0.8988	-0.00037171	413.5579971339255	54.398	0.59836	54.398	54.162	54.761	0					43	21	3	0	0	0	0.25431	1	13005	13005		9.3831	2.2814	1	317570	+		56135	16079	32235	32236	68544	68544					0.044246674135138164
VYFFRMVI	8	Unmodified	_VYFFRMVI_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.3187866210938	2	537.793881	1073.57321	0.42001	0.00022588	1.0791	0.00058035	1.4991	0.00080623	538.2955564017311	73.367	1.2259	73.367	72.667	73.893	0					66	43	2	0	0	0	0.30749	1	18568	18568		28.173	14.267	1	213820			56136	3530	32236	32237	68545	68545					0.039364828188354295
VYFFRMVI	8	Unmodified	_VYFFRMVI_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2660522460938	2	537.793881	1073.57321	0.65258	0.00035095	0.4685	0.00025196	1.1211	0.00060291	538.2953093568213	86.718	0.65282	86.713	86.342	86.995	-0.0056229					57	25	3	0	0	0	0.32778	1	22831	22831		20.871	3.7583	1	220110			56137	3530	32236	32237	68546	68546					0.039364828188354295
VYFGDPVSL	9	Unmodified	_VYFGDPVSL_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT;ENST00000492459.1_1_1:231402025-231403654:+|nuORF	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7556457519531	2	498.755475	995.496398	0.48202	0.00024041	0.13827	6.8962E-05	0.62029	0.00030937	498.75531015331285	72.794	0.65828	72.794	72.56	73.218	0					67	23	4	0	0	0	0.015402	1	18571	18571		71.134	30.685	1	570910			56138	2762	32237	32238	68547	68547					-0.001530371966509847
VYFGDPVSL	9	Unmodified	_VYFGDPVSL_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT;ENST00000492459.1_1_1:231402025-231403654:+|nuORF	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7557067871094	2	498.755475	995.496398	0.40835	0.00020367	0.47167	0.00023525	0.88003	0.00043892	498.7554083789363	72.746	0.87958	72.8	72.51	73.389	0.053841					77	31	4	0	0	0	0.068501	2	18526	18526;18574		46.021	13.904	1	488110			56139	2762	32237	32238	68548;68549	68548					-0.001530371966509847
VYFGDPVSL	9	Unmodified	_VYFGDPVSL_					0	0	0		ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT;ENST00000492459.1_1_1:231402025-231403654:+|nuORF	ENSG00000116906|ENST00000366647|GNPAT	ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7555236816406	2	498.755475	995.496398	0.49362	0.0002462	0.3436	0.00017137	0.83722	0.00041757	498.75540248596076	72.857	0.80484	72.828	72.486	73.291	-0.029297					76	28	4	0	0	0	0.015402	2	18590	18544;18590		71.134	30.685	1	596820			56140	2762	32237	32238	68550;68551	68551					-0.001530371966509847
VYFHEYSFF	9	Unmodified	_VYFHEYSFF_					0	0	0			REV__ENST00000477110.6_1_X:302544-308028:-|nuORF	REV__ENST00000477110.6_1_X:302544-308028:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5220642089844	3	413.52208	1237.54441	0.044248	1.8297E-05	0.79763	0.00032984	0.84188	0.00034814	413.52226912983394	41.072	0.5649	41.169	40.857	41.422	0.096626					48	20	3	0	0	0	0.30459	1	8798	8798		8.1555	1.0538	1	407640	+		56141	17382	32238	32239	68552	68552					-0.06485963276645634
VYFHEYSFF	9	Unmodified	_VYFHEYSFF_					0	0	0			REV__ENST00000477110.6_1_X:302544-308028:-|nuORF	REV__ENST00000477110.6_1_X:302544-308028:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	413.52208	1237.54441	-0.12853	-5.3151E-05	1.3445	0.000556	1.216	0.00050285	413.5226164245761	41.532	0.37021	41.532	41.225	41.596	0	0.21975	0.0006468	NaN	8.1555	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1231300	+		56142	17382	32238	32239							-0.06485963276645634
VYFISPQGL	9	Unmodified	_VYFISPQGL_					0	0	0		nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4	nc|ENSG00000129071|O95243-3|MBD4	nc|ENSG00000129071|O95243-3|MBD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2897338867188	2	512.279118	1022.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.633	1	73.633	73.133	74.133	0								0	0	0	0.20639	1	18829	18829		20.454	0	1				56143	3407	32239	32240	68553	68553					0.03331242074330021
VYFISPQGL	9	Unmodified	_VYFISPQGL_					0	0	0		nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4	nc|ENSG00000129071|O95243-3|MBD4	nc|ENSG00000129071|O95243-3|MBD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2894287109375	2	512.279118	1022.54368	0.14383	7.3682E-05	1.1229	0.00057523	1.2667	0.00064892	512.279882794392	73.888	0.68727	73.857	73.397	74.085	-0.030655					32	24	2	0	0	0	0.12743	1	18867	18867		46.021	25.567	1	219610			56144	3407	32239	32240	68554	68554					0.03331242074330021
VYFISPQGLKF	11	Unmodified	_VYFISPQGLKF_					0	0	0		nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4	nc|ENSG00000129071|O95243-3|MBD4	nc|ENSG00000129071|O95243-3|MBD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.861328125	2	649.860806	1297.70706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.266	1	73.266	72.766	73.766	0								0	0	0	0.17772	1	18717	18717		51.415	21.575	1				56145	3407	32240	32241	68555	68555					0.07011420125354562
VYFISPQGLKF	11	Unmodified	_VYFISPQGLKF_					0	0	0		nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4	nc|ENSG00000129071|O95243-3|MBD4	nc|ENSG00000129071|O95243-3|MBD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8617553710938	2	649.860806	1297.70706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.423	1	73.423	72.923	73.923	0								0	0	0	0.15913	1	18765	18765		46.022	19.754	1				56146	3407	32240	32241	68556	68556					0.07011420125354562
VYFISPQGLKF	11	Unmodified	_VYFISPQGLKF_					0	0	0		nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4	nc|ENSG00000129071|O95243-3|MBD4	nc|ENSG00000129071|O95243-3|MBD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8610229492188	2	649.860806	1297.70706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.313	1	73.366	72.866	73.866	0.053833								0	0	0	0.062833	1	18723	18723		63.227	36.959	1				56147	3407	32240	32241	68557	68557					0.07011420125354562
VYFISPQGLKF	11	Unmodified	_VYFISPQGLKF_					0	0	0		nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4	nc|ENSG00000129071|O95243-3|MBD4	nc|ENSG00000129071|O95243-3|MBD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8603515625	2	649.860806	1297.70706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.486	1	73.54	73.04	74.04	0.053833								0	0	0	0.3075	1	18776	18776		27.223	6.8087	1				56148	3407	32240	32241	68558	68558					0.07011420125354562
VYFISPQGLKF	11	Unmodified	_VYFISPQGLKF_					0	0	0		nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4	nc|ENSG00000129071|O95243-3|MBD4	nc|ENSG00000129071|O95243-3|MBD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8609619140625	2	649.860806	1297.70706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.381	1	73.351	72.851	73.851	-0.029305								0	0	0	0.04075	1	18738	18738		70.929	30.689	1				56149	3407	32240	32241	68559	68559					0.07011420125354562
VYFISPQGLKF	11	Unmodified	_VYFISPQGLKF_					0	0	0		nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4	nc|ENSG00000129071|O95243-3|MBD4	nc|ENSG00000129071|O95243-3|MBD4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8609008789062	2	649.860806	1297.70706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.541	1	73.511	73.011	74.011	-0.029305								0	0	0	0.1072	1	18786	18786		53.317	19.872	1				56150	3407	32240	32241	68560	68560					0.07011420125354562
VYFLFWAPY	9	Unmodified	_VYFLFWAPY_					0	0	0		ENSG00000160791|ENST00000292303|CCR5	ENSG00000160791|ENST00000292303|CCR5	ENSG00000160791|ENST00000292303|CCR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3609619140625	2	603.305136	1204.59572	0.40994	0.00024732	-3.1702	-0.0019126	-2.7603	-0.0016653	603.3026378100183	73.13	0.40932	73.184	73.01	73.419	0.053833					23	14	2	0	0	0	0.24542	1	18731	18731		14.582	0	1	90079			56151	5488	32241	32242	68561	68561					0.0016040548809996835
VYFLFWAPY	9	Unmodified	_VYFLFWAPY_					0	0	0		ENSG00000160791|ENST00000292303|CCR5	ENSG00000160791|ENST00000292303|CCR5	ENSG00000160791|ENST00000292303|CCR5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	603.305136	1204.59572	0.45664	0.00027549	-4.2921	-0.0025894	-3.8354	-0.0023139	603.3023021461029	73.151	0.63168	73.121	72.793	73.425	-0.029305	-0.031265	-0.00074137	NaN	14.582	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123150			56152	5488	32241	32242							0.0016040548809996835
VYFPALTSLLS	11	Unmodified	_VYFPALTSLLS_					0	0	0		nc|ENSG00000101194|Q9BYT1-3|SLC17A9;ENST00000488738.5_1_20:61584086-61594126:+|nuORF;nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9	nc|ENSG00000101194|Q9BYT1-3|SLC17A9	nc|ENSG00000101194|Q9BYT1-3|SLC17A9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2279968261719	3	404.228785	1209.66453	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.947	1	66.933	66.433	67.433	-0.013588								0	0	0	0.37252	1	16772	16772		1.3296	0	1				56153	1674	32242	32243	68562	68562					0.06808024997144457
VYFPDQHINF	10	Unmodified	_VYFPDQHINF_					0	0	0		nc|ENSG00000116117|Q8TEW8-5|PARD3B;nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-5|PARD3B	nc|ENSG00000116117|Q8TEW8-5|PARD3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.3090209960938	2	640.308938	1278.60332	0.44216	0.00028312	-0.077274	-4.9479E-05	0.36489	0.00023364	640.3088325766815	62.465	1.2265	62.465	62.162	63.389	0					140	45	4	0	0	0	7.0748E-09	6	15414	15368;15414;15465;15521;15573;15651		171.46	121.53	1	5482200			56154	2703	32243	32244	68563;68564;68565;68566;68567;68568	68564					-0.024834869822825567
VYFPDQHINF	10	Unmodified	_VYFPDQHINF_					0	0	0		nc|ENSG00000116117|Q8TEW8-5|PARD3B;nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-5|PARD3B	nc|ENSG00000116117|Q8TEW8-5|PARD3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.3091430664062	2	640.308938	1278.60332	0.56809	0.00036375	-0.20344	-0.00013026	0.36465	0.00023349	640.3087707748009	62.352	1.3373	62.449	62.175	63.512	0.096985					143	48	5	0	0	0	1.3419E-08	4	15384	15337;15384;15436;15498		163.69	116.09	1	5825800			56155	2703	32243	32244	68569;68570;68571;68572	68570					-0.024834869822825567
VYFPDQHINF	10	Unmodified	_VYFPDQHINF_					0	0	0		nc|ENSG00000116117|Q8TEW8-5|PARD3B;nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-5|PARD3B	nc|ENSG00000116117|Q8TEW8-5|PARD3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.30908203125	2	640.308938	1278.60332	0.56005	0.00035861	-0.2118	-0.00013562	0.34825	0.00022299	640.3087387793114	62.492	1.4104	62.483	62.094	63.504	-0.0085564					154	52	5	0	0	0	8.7593E-06	5	15402	15354;15402;15451;15503;15572		151.48	107.62	1	5693800			56156	2703	32243	32244	68573;68574;68575;68576;68577	68574					-0.024834869822825567
VYFRGNWDE	9	Unmodified	_VYFRGNWDE_					0	0	0		ENST00000380520.5_1_6:2953326-2953380:-|nuORF;ENSG00000124570|ENST00000380539|SERPINB6	ENST00000380520.5_1_6:2953326-2953380:-|nuORF	ENST00000380520.5_1_6:2953326-2953380:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.2814331054688	2	593.269813	1184.52507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.2	1	56.279	55.779	56.779	0.078674								0	0	0	0.22065	1	13472	13472		15.847	0	1				56157	3166	32244	32245	68578	68578					-0.05980919567491583
VYFRTVELI	9	Unmodified	_VYFRTVELI_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103590092-103612100:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8062744140625	2	570.326599	1138.63865	0.04735	2.7005E-05	0.08509	4.8529E-05	0.13244	7.5534E-05	570.326870920755	64.951	0.54324	64.951	64.699	65.242	0					29	19	2	0	0	0	0.16853	1	16213	16213		38.176	12.776	1	602750			56158	2249	32245	32246	68579	68579					0.07487175545543323
VYFRTVELI	9	Unmodified	_VYFRTVELI_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103590092-103612100:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.8064575195312	2	570.326599	1138.63865	0.31282	0.00017841	-0.09049	-5.1609E-05	0.22233	0.0001268	570.3269509851103	64.879	0.47472	64.968	64.742	65.216	0.088913					25	17	2	0	0	0	0.20881	1	16172	16172		27.629	7.1752	1	586400			56159	2249	32245	32246	68580	68580					0.07487175545543323
VYFRTVELI	9	Unmodified	_VYFRTVELI_					0	0	0		ENSG00000109323|ENST00000647097|MANBA;ENST00000514430.5_1_4:103590092-103612100:-|nuORF	ENSG00000109323|ENST00000647097|MANBA	ENSG00000109323|ENST00000647097|MANBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.806396484375	2	570.326599	1138.63865	-0.0087647	-4.9987E-06	0.37075	0.00021145	0.36199	0.00020645	570.3271118448322	64.975	0.47704	64.964	64.78	65.257	-0.011337					26	17	2	0	0	0	0.16853	1	16202	16202		38.176	12.776	1	600750			56160	2249	32245	32246	68581	68581					0.07487175545543323
VYFSAAHAL	9	Unmodified	_VYFSAAHAL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.3146057128906	2	489.75581	977.497067	0.57668	0.00028243	-0.62578	-0.00030648	-0.049096	-2.4045E-05	489.7558847923503	47.81	0.32623	47.81	47.608	47.934	0					16	11	2	0	0	0	0.15464	1	10909	10909		38.151	7.9264	1	671400			56161	3863	32246	32247	68582	68582					0.007418022430329074
VYFSAAHAL	9	Unmodified	_VYFSAAHAL_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	489.75581	977.497067	0.58895	0.00028844	-1.0215	-0.00050031	-0.4326	-0.00021187	489.7559360511748	47.71	0.32025	47.753	47.504	47.824	0.04332	-0.028743	-0.00025317	NaN	38.151	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	520990			56162	3863	32246	32247							0.007418022430329074
VYFSAVKNVL	10	Unmodified	_VYFSAVKNVL_					0	0	0		nc|ENSG00000144837|Q53H76-3|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.8093872070312	2	570.326599	1138.63865	0.56023	0.00031952	-0.54715	-0.00031205	0.013084	7.462E-06	570.3261110899799	58.587	0.50002	58.573	58.331	58.831	-0.014267					46	17	3	0	0	0	0.22071	1	14181	14181		45.74	0	1	1222700			56163	12739	32247	32248	68583	68583					0.07487175545520586
VYFSAVKNVL	10	Unmodified	_VYFSAVKNVL_					0	0	0		nc|ENSG00000144837|Q53H76-3|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	nc|ENSG00000144837|Q53H76-3|PLA1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	570.326599	1138.63865	0.40849	0.00023297	-0.42358	-0.00024158	-0.015092	-8.6074E-06	570.3262478821684	58.405	0.56982	58.497	58.194	58.764	0.091305	-0.06133	5.813E-05	NaN	45.74	50	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1002800			56164	12739	32247	32248							0.07487175545520586
VYFSDKNDS	9	Unmodified	_VYFSDKNDS_					0	0	0			REV__nc|ENSG00000164418|Q13002-3|GRIK2	REV__nc|ENSG00000164418|Q13002-3|GRIK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2527465820312	2	537.740554	1073.46655	0.50417	0.00027111	-1.658	-0.00089158	-1.1538	-0.00062047	537.7397521001162	81.443	0.25674	81.419	81.326	81.583	-0.02404					13	11	2	0	0	0	0.25066	1	21196	21196		11.64	3.047	1	85641	+		56165	17158	32248	32249	68584	68584					-0.06724020932665553
VYFSIQSASCK	11	Unmodified	_VYFSIQSASCK_					0	0	0		ENST00000506421.5_1_4:86396696-86644501:+|nuORF	ENST00000506421.5_1_4:86396696-86644501:+|nuORF	ENST00000506421.5_1_4:86396696-86644501:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.7631225585938	2	616.802631	1231.59071	0.28357	0.00017491	3.1873	0.0019659	3.4708	0.0021408	617.3053038832205	68.904	0.10946	68.904	68.841	68.951	0					5	3	2	0	0	0	0.33119	1	17377	17377		5.7319	1.4026	1	86571			56166	11327	32249	32250	68585	68585					-0.01582266436844293
VYFTRPMTM	9	2 Oxidation (M)	_VYFTRPM(Oxidation (M))TM(Oxidation (M))_		VYFTRPM(1)TM(1)		VYFTRPM(65)TM(65)	0	0	2		nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59;nc|ENSG00000103091|Q6PJI9-3|WDR59	nc|ENSG00000103091|Q6PJI9-2|WDR59	nc|ENSG00000103091|Q6PJI9-2|WDR59	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.273193359375	2	589.272652	1176.53075	0.47909	0.00028231	0.19975	0.0001177	0.67883	0.00040002	589.2726701606173	36.069	0.71531	36.151	35.771	36.486	0.082359					41	25	3	0	0	0	0.01909	2	7240	7240;7309		65.474	41.453	1	391740			56167	1808	32250	32251	68586;68587	68586		218;219			-0.05045280371723493
VYFTRPMTM	9	2 Oxidation (M)	_VYFTRPM(Oxidation (M))TM(Oxidation (M))_					0	0	2		nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59;nc|ENSG00000103091|Q6PJI9-3|WDR59	nc|ENSG00000103091|Q6PJI9-2|WDR59	nc|ENSG00000103091|Q6PJI9-2|WDR59	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	589.272652	1176.53075	0.48851	0.00028787	0.14649	8.6322E-05	0.635	0.00037419	589.2724731891951	36.151	0.52934	36.151	35.856	36.385	0	0.017316	7.5943E-05	NaN	65.474	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295460			56168	1808	32250	32251				218;219			-0.05045280371723493
VYFTRPMTM	9	2 Oxidation (M)	_VYFTRPM(Oxidation (M))TM(Oxidation (M))_					0	0	2		nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59;nc|ENSG00000103091|Q6PJI9-3|WDR59	nc|ENSG00000103091|Q6PJI9-2|WDR59	nc|ENSG00000103091|Q6PJI9-2|WDR59	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	589.272652	1176.53075	0.56763	0.00033449	-0.18251	-0.00010755	0.38512	0.00022694	589.2726657944511	36.012	0.69983	36.099	35.671	36.371	0.08625	-0.034725	-0.0003118	NaN	65.474	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241140			56169	1808	32250	32251				218;219			-0.05045280371723493
VYFVAPAKF	9	Unmodified	_VYFVAPAKF_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.3367919921875	2	521.292028	1040.5695	0.5007	0.00026101	-1.0381	-0.00054115	-0.53739	-0.00028014	521.2915017868563	58.645	0.74919	58.645	58.413	59.162	0					41	25	2	0	0	0	0.10111	1	14268	14268		50.855	24.514	1	333510			56170	730	32251	32252	68588	68588					0.05084136316600052
VYFVAPAKF	9	Unmodified	_VYFVAPAKF_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.3368530273438	2	521.292028	1040.5695	0.61418	0.00032017	-1.2485	-0.00065085	-0.63435	-0.00033068	521.2911292977352	58.629	0.69813	58.614	58.386	59.084	-0.014267					32	24	2	0	0	0	0.1659	1	14287	14287		36.044	13.308	1	239070			56171	730	32251	32252	68589	68589					0.05084136316600052
VYFVHPTF	8	Unmodified	_VYFVHPTF_					0	0	0		ENST00000491626.5_1_1:118413193-118429252:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2	ENST00000491626.5_1_1:118413193-118429252:-|nuORF	ENST00000491626.5_1_1:118413193-118429252:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.3241271972656	2	505.260728	1008.5069	0.31326	0.00015828	1.2908	0.00065221	1.6041	0.00081049	505.2615256957692	58.041	0.73106	58.041	57.768	58.5	0					60	25	3	0	0	0	0.2463	1	14045	14045		49.669	23.328	1	923730			56172	7874	32252	32253	68590	68590					0.0029899024842734434
VYFVHPTF	8	Unmodified	_VYFVHPTF_					0	0	0		ENST00000491626.5_1_1:118413193-118429252:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2	ENST00000491626.5_1_1:118413193-118429252:-|nuORF	ENST00000491626.5_1_1:118413193-118429252:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.32415771484375	2	505.260728	1008.5069	0.33084	0.00016716	1.3292	0.00067158	1.66	0.00083874	505.26167003882637	57.809	0.72792	57.895	57.659	58.387	0.085617					58	26	3	0	0	0	0.2463	1	13993	13993		49.669	23.328	1	989790			56173	7874	32252	32253	68591	68591					0.0029899024842734434
VYFVHPTF	8	Unmodified	_VYFVHPTF_					0	0	0		ENST00000491626.5_1_1:118413193-118429252:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2	ENST00000491626.5_1_1:118413193-118429252:-|nuORF	ENST00000491626.5_1_1:118413193-118429252:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.3240966796875	2	505.260728	1008.5069	0.52209	0.00026379	0.99272	0.00050158	1.5148	0.00076537	505.26135220521496	58.08	0.78654	58.062	57.793	58.58	-0.0172					61	28	3	0	0	0	0.2463	1	14109	14109		49.669	35.087	1	881780			56174	7874	32252	32253	68592	68592					0.0029899024842734434
VYFVVFPFFFV	11	Unmodified	_VYFVVFPFFFV_					0	0	0		ENSG00000198216|ENST00000367573|CACNA1E;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	ENSG00000198216|ENST00000367573|CACNA1E;CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant;nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.76629638671875	3	470.921404	1409.74238	0.069152	3.2565E-05	2.2285	0.0010495	2.2977	0.001082	470.9222666249225	52.306	0.55296	52.306	51.941	52.494	0					41	19	3	0	0	0	0.32813	1	12320	12320		12.175	3.423	1	643160			56175	8052;12750;85	32253	32254	68593	68593					0.053900826531616985
VYFVVFPFFFV	11	Unmodified	_VYFVVFPFFFV_					0	0	0		ENSG00000198216|ENST00000367573|CACNA1E;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	ENSG00000198216|ENST00000367573|CACNA1E;CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant;nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	470.921404	1409.74238	0.17837	8.3999E-05	1.8119	0.00085327	1.9903	0.00093727	470.9222683380933	52.17	0.40549	52.221	52.036	52.441	0.050571	-0.11261	-0.00042886	NaN	12.175	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	688910			56176	8052;12750;85	32253	32254							0.053900826531616985
VYFVVFPFFFV	11	Unmodified	_VYFVVFPFFFV_					0	0	0		ENSG00000198216|ENST00000367573|CACNA1E;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	ENSG00000198216|ENST00000367573|CACNA1E;CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant;nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	470.921404	1409.74238	0.093591	4.4074E-05	2.2785	0.001073	2.372	0.001117	470.92237937373267	52.474	0.65364	52.474	52.218	52.872	-0.00080872	0.14031	0.00023023	NaN	12.175	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	687630			56177	8052;12750;85	32253	32254							0.053900826531616985
VYFWFRRTF	9	Unmodified	_VYFWFRRTF_					0	0	0			REV__ENST00000263331.9_1_2:113299748-113300117:+|nuORF	REV__ENST00000263331.9_1_2:113299748-113300117:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.7875671386719	3	441.232864	1320.67676	0.020739	9.1506E-06	1.1305	0.00049881	1.1512	0.00050796	441.2331687893553	33.676	1.4971	33.743	32.997	34.495	0.066704					113	53	3	0	0	0	0.25756	1	6478	6478		4.1895	0	1	641730	+		56178	19619	32254	32255	68594	68594					0.029251062508137693
VYGAALQF	8	Unmodified	_VYGAALQF_					0	0	0		ENSG00000198837|ENST00000361217|DENND4B	ENSG00000198837|ENST00000361217|DENND4B	ENSG00000198837|ENST00000361217|DENND4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8024597167969	2	434.731803	867.449054	-0.10166	-4.4197E-05	-0.6313	-0.00027445	-0.73297	-0.00031865	434.7314040525179	62.206	0.61645	62.206	61.86	62.476	0					32	22	2	0	0	0	0.21281	1	15298	15298		46.921	0	1	209580			56179	8138	32255	32256	68595	68595					0.010027283229987916
VYGAALQF	8	Unmodified	_VYGAALQF_					0	0	0		ENSG00000198837|ENST00000361217|DENND4B	ENSG00000198837|ENST00000361217|DENND4B	ENSG00000198837|ENST00000361217|DENND4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.80242919921875	2	434.731803	867.449054	-0.17324	-7.5312E-05	-0.10109	-4.3948E-05	-0.27433	-0.00011926	434.7316734601719	62.109	0.46392	62.206	61.978	62.442	0.096989					26	16	2	0	0	0	0.059117	1	15294	15294		74.396	0	1	211110			56180	8138	32255	32256	68596	68596					0.010027283229987916
VYGAALQF	8	Unmodified	_VYGAALQF_					0	0	0		ENSG00000198837|ENST00000361217|DENND4B	ENSG00000198837|ENST00000361217|DENND4B	ENSG00000198837|ENST00000361217|DENND4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.8025207519531	2	434.731803	867.449054	-0.13396	-5.8236E-05	-0.30655	-0.00013327	-0.44051	-0.0001915	434.731472592146	62.126	0.61953	62.117	61.846	62.465	-0.0085526					35	22	2	0	0	0	0.11129	1	15314	15314		74.396	0	1	227250			56181	8138	32255	32256	68597	68597					0.010027283229987916
VYGALFWSL	9	Unmodified	_VYGALFWSL_					0	0	0		nc|ENSG00000185739|Q86TD4-3|SRL;ENSG00000185739|ENST00000399609|SRL;nc|ENSG00000185739|Q86TD4-1|SRL	nc|ENSG00000185739|Q86TD4-3|SRL	nc|ENSG00000185739|Q86TD4-3|SRL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.298095703125	2	528.28166	1054.54877	0.41633	0.00021994	-0.40408	-0.00021347	0.012253	6.4733E-06	528.2811712740496	60.317	1.0368	60.306	59.85	60.886	-0.011486					114	37	4	0	0	0	0.193	1	14909	14909		24.674	2.9272	1	5026900			56182	7553	32256	32257	68598	68598					0.023675459369314922
VYGDFQEAF	9	Unmodified	_VYGDFQEAF_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.8316040039062	2	538.24019	1074.46583	0.23775	0.00012796	0.87107	0.00046885	1.1088	0.00059681	538.2405574888637	65.212	0.93696	65.212	64.884	65.821	0					102	33	4	0	0	0	0.016005	1	16265	16265		57.722	27.085	1	1913000			56183	2462	32257	32258	68599	68599					-0.06842815581717332
VYGDFQEAF	9	Unmodified	_VYGDFQEAF_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.8316650390625	2	538.24019	1074.46583	0.13209	7.1098E-05	1.0218	0.00054998	1.1539	0.00062108	538.2407181156163	65.066	1.2435	65.155	64.844	66.088	0.088882					105	45	4	0	0	0	0.042824	1	16227	16227		75.761	29.74	1	2308500			56184	2462	32257	32258	68600	68600					-0.06842815581717332
VYGDFQEAF	9	Unmodified	_VYGDFQEAF_					0	0	0		ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	ENSG00000112773|ENST00000320172|TENT5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.260009765625	2	538.24019	1074.46583	0.20374	0.00010966	0.77932	0.00041946	0.98306	0.00052912	538.2405374624539	65.17	0.83459	65.159	64.833	65.668	-0.011337					82	30	4	0	0	0	0.12279	1	16296	16296		34.932	16.786	1	2283100			56185	2462	32257	32258	68601	68601					-0.06842815581717332
VYGDIWLPL	9	Unmodified	_VYGDIWLPL_					0	0	0			REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF	REV__ENST00000495849.5_1_2:191897681-192012929:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7821655273438	2	538.294768	1074.57498	0.71901	0.00038704	0.075386	4.058E-05	0.79439	0.00042762	538.2947959423144	84.649	0.78072	84.636	84.034	84.814	-0.01284					45	31	2	0	0	0	0.21137	1	22166	22166		24.674	1.5255	1	163450	+		56186	15924	32258	32259	68602	68602					0.04067815108442119
VYGEKFFSTL	10	Unmodified	_VYGEKFFSTL_					0	0	0			REV__nc|ENSG00000176927|A4FU69-6|EFCAB5	REV__nc|ENSG00000176927|A4FU69-6|EFCAB5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.7960205078125	2	595.808239	1189.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.434	1	62.434	61.934	62.934	0								0	0	0	0.37157	1	15403	15403		5.7319	0.97584	1		+		56187	17959	32259	32260	68603	68603					0.014708789289670676
VYGERIVPL	9	Unmodified	_VYGERIVPL_					0	0	0			REV__ENST00000345985.7_1_2:10712068-10712188:-|nuORF	REV__ENST00000345985.7_1_2:10712068-10712188:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7592163085938	2	523.305667	1044.59678	-0.89135	-0.00046645	-2.3052	-0.0012063	-3.1965	-0.0016728	523.3043239436962	34.779	0.60837	34.779	34.362	34.971	0					30	21	2	0	0	0	0.2451	1	6818	6818		15.847	1.9411	1	152980	+		56188	20149	32260	32261	68604	68604					0.07626619856978323
VYGFLRNGF	9	Unmodified	_VYGFLRNGF_					0	0	0		ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.7825927734375	2	536.782359	1071.55016	0.28399	0.00015244	0.30025	0.00016117	0.58424	0.00031361	536.7824395104494	59.598	1.1725	59.598	59.241	60.413	0					121	41	4	0	0	0	1.576E-05	2	14534	14534;14589		154.46	107.54	1	10997000			56189	9543	32261	32262	68605;68606	68605					0.017251800257099603
VYGFLRNGF	9	Unmodified	_VYGFLRNGF_					0	0	0		ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.7827758789062	2	536.782359	1071.55016	0.24407	0.00013102	0.32143	0.00017254	0.5655	0.00030355	536.7825200229095	59.419	1.8427	59.512	59.078	60.921	0.092522					167	66	6	0	0	0	2.4571E-07	5	14470	14420;14470;14511;14557;14623		170.55	123.63	1	9828400			56190	9543	32261	32262	68607;68608;68609;68610;68611	68608					0.017251800257099603
VYGFLRNGF	9	Unmodified	_VYGFLRNGF_					0	0	0		ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7827758789062	2	536.782359	1071.55016	0.57748	0.00030998	0.085015	4.5634E-05	0.66249	0.00035561	536.7823616965563	59.61	1.2298	59.599	59.174	60.404	-0.011486					129	43	5	0	0	0	2.4571E-07	4	14532	14484;14532;14575;14624		170.55	122.21	1	11069000			56191	9543	32261	32262	68612;68613;68614;68615	68613					0.017251800257099603
VYGFVREAL	9	Unmodified	_VYGFVREAL_					0	0	0		ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.29052734375	2	527.290017	1052.56548	0.75008	0.00039551	-0.23301	-0.00012287	0.51706	0.00027264	527.289997307746	53.854	1.4011	53.854	53.516	54.917	0					167	51	5	0	0	0	0.0013683	4	12739	12693;12739;12783;12834		118.07	67.213	1	17948000			56192	6197	32262	32263	68616;68617;68618;68619	68617					0.04130046822888289
VYGFVREAL	9	Unmodified	_VYGFVREAL_					0	0	0		ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2587890625	2	527.290017	1052.56548	0.67966	0.00035838	-0.21006	-0.00011076	0.4696	0.00024762	527.2899756955643	55.114	0.72218	55.114	54.708	55.431	0					39	26	2	0	0	0	0.23693	1	13176	13176		21.59	3.4438	1	363020			56193	6197	32262	32263	68620	68620					0.04130046822888289
VYGFVREAL	9	Unmodified	_VYGFVREAL_					0	0	0		ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2904663085938	2	527.290017	1052.56548	0.40485	0.00021347	0.06854	3.6141E-05	0.47339	0.00024961	527.2901656739662	53.786	1.5319	53.843	53.509	55.041	0.056259					174	57	5	0	0	0	0.0013683	3	12715	12673;12715;12766		118.07	67.213	1	18988000			56194	6197	32262	32263	68621;68622;68623	68622					0.04130046822888289
VYGFVREAL	9	Unmodified	_VYGFVREAL_					0	0	0		ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2586059570312	2	527.290017	1052.56548	0.68526	0.00036133	-0.11621	-6.1276E-05	0.56905	0.00030005	527.2901025042884	55.131	0.95617	55.202	54.898	55.854	0.070885					48	35	2	0	0	0	0.23749	1	13155	13155		20.415	2.2682	1	370400			56195	6197	32262	32263	68624	68624					0.04130046822888289
VYGFVREAL	9	Unmodified	_VYGFVREAL_					0	0	0		ENST00000588238.1_1_19:4446018-4446171:-|nuORF;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENSG00000167671|ENST00000301281|UBXN6	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	ENST00000588238.1_1_19:4446018-4446171:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2904052734375	2	527.290017	1052.56548	0.65496	0.00034535	-0.14466	-7.6279E-05	0.5103	0.00026908	527.2900243077169	54.085	1.3448	54.069	53.738	55.083	-0.015923					157	48	5	0	0	0	0.00045155	3	12806	12757;12806;12848		129.77	73.595	1	20016000			56196	6197	32262	32263	68625;68626;68627	68626					0.04130046822888289
VYGGETSFY	9	Unmodified	_VYGGETSFY_					0	0	0			REV__nc|ENSG00000112769|Q16363-2|LAMA4	REV__nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.78668212890625	2	511.726915	1021.43928	0.56675	0.00029002	-0.26881	-0.00013756	0.29794	0.00015246	511.72672629925773	64.151	0.48296	64.151	63.859	64.342	0					32	17	3	0	0	0	0.19839	1	15885	15885		21.747	1.293	1	207050	+		56197	14787	32263	32264	68628	68628					-0.07058504473036464
VYGGETSFY	9	Unmodified	_VYGGETSFY_					0	0	0			REV__nc|ENSG00000112769|Q16363-2|LAMA4	REV__nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2970581054688	2	511.726915	1021.43928	0.40856	0.00020907	-0.53895	-0.00027579	-0.13038	-6.672E-05	511.72657600261704	64.019	0.46069	64.112	63.848	64.309	0.09288					27	16	2	0	0	0	0.22596	1	15901	15901		21.747	1.293	1	259670	+		56198	14787	32263	32264	68629	68629					-0.07058504473036464
VYGGFLTI	8	Unmodified	_VYGGFLTI_					0	0	0			REV__ENSG00000175782|ENST00000398004|SLC35E3	REV__ENSG00000175782|ENST00000398004|SLC35E3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	435.251953125	2	435.242004	868.469455	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.793	1	71.85	71.35	72.35	0.056572								0	0	0	0.36169	1	18261	18261		9.3474	0	1		+		56199	17908	32264	32265	68630	68630					0.029958989827946425
VYGIFNSVLF	10	Unmodified	_VYGIFNSVLF_					0	0	0		nc|ENSG00000142920|Q96A70-5|AZIN2;ENST00000478204.5_1_1:33557816-33585780:+|nuORF;nc|ENSG00000142920|Q96A70-3|AZIN2;nc|ENSG00000142920|Q96A70-4|AZIN2;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENSG00000142920|ENST00000294517|AZIN2;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2	nc|ENSG00000142920|Q96A70-5|AZIN2	nc|ENSG00000142920|Q96A70-5|AZIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.8134155273438	2	579.813325	1157.6121	0.084787	4.9161E-05	0.043887	2.5446E-05	0.12867	7.4607E-05	579.8134736255801	94.92	0.52341	94.92	94.677	95.201	0					95	46	3	0	0	0	0.045157	2	25300	25300;25341		60.074	21.923	1	168350			56200	4469	32265	32266	68631;68632	68631					0.039594866541847296
VYGIFNSVLF	10	Unmodified	_VYGIFNSVLF_					0	0	0		nc|ENSG00000142920|Q96A70-5|AZIN2;ENST00000478204.5_1_1:33557816-33585780:+|nuORF;nc|ENSG00000142920|Q96A70-3|AZIN2;nc|ENSG00000142920|Q96A70-4|AZIN2;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENSG00000142920|ENST00000294517|AZIN2;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2	nc|ENSG00000142920|Q96A70-5|AZIN2	nc|ENSG00000142920|Q96A70-5|AZIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.8132934570312	2	579.813325	1157.6121	0.22037	0.00012778	-0.12736	-7.3844E-05	0.093016	5.3932E-05	579.8134469745438	94.729	0.47322	94.812	94.604	95.077	0.082779					67	37	2	0	0	0	0.19885	1	25269	25269		32.786	13.529	1	209170			56201	4469	32265	32266	68633	68633					0.039594866541847296
VYGIFNSVLF	10	Unmodified	_VYGIFNSVLF_					0	0	0		nc|ENSG00000142920|Q96A70-5|AZIN2;ENST00000478204.5_1_1:33557816-33585780:+|nuORF;nc|ENSG00000142920|Q96A70-3|AZIN2;nc|ENSG00000142920|Q96A70-4|AZIN2;ENST00000484656.5_1_1:33549518-33583718:+|nuORF;ENST00000471119.5_1_1:33546965-33585780:+|nuORF;ENSG00000142920|ENST00000294517|AZIN2;ENST00000481886.5_1_1:33546965-33585780:+|nuORF;nc|ENSG00000142920|Q96A70-2|AZIN2	nc|ENSG00000142920|Q96A70-5|AZIN2	nc|ENSG00000142920|Q96A70-5|AZIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.8128662109375	2	579.813325	1157.6121	0.36766	0.00021317	-0.28711	-0.00016647	0.080554	4.6706E-05	579.813350951623	94.83	0.54451	94.828	94.595	95.139	-0.0020142					78	45	2	0	0	0	0.083722	2	25302	25302;25359		51.63	25.362	1	245300			56202	4469	32265	32266	68634;68635	68634					0.039594866541847296
VYGIHLLEEF	10	Unmodified	_VYGIHLLEEF_					0	0	0			REV__ENST00000220913.9_1_8:141525461-141525764:+|nuORF	REV__ENST00000220913.9_1_8:141525461-141525764:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.7798461914062	2	610.321514	1218.62847	0.62137	0.00037924	-3.3513	-0.0020454	-2.7299	-0.0016661	610.3190680907375	54.382	0.67183	54.445	54.218	54.89	0.063202					30	24	2	0	0	0	0.31847	1	12885	12885		6.7232	3.4419	1	188700	+		56203	19426	32266	32267	68636	68636					0.02790567820261458
VYGKAFSQSS	10	Unmodified	_VYGKAFSQSS_					0	0	0		ENSG00000198169|ENST00000292562|ZNF251	ENSG00000198169|ENST00000292562|ZNF251	ENSG00000198169|ENST00000292562|ZNF251	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2669677734375	2	537.266739	1072.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.5	1	99.5	99	100	0								0	0	0	0.36922	1	26617	26617		6.7232	0.36906	1				56204	8044	32267	32268	68637	68637					-0.014434377990482972
VYGKTSHL	8	Unmodified	_VYGKTSHL_					0	0	0		nc|ENSG00000172845|Q02447-6|SP3;ENSG00000172845|ENST00000310015|SP3;nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-2|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;ENST00000465379.1_1_2:174774671-174778005:-|nuORF;ENSG00000105866|ENST00000222584|SP4;nc|ENSG00000185591|P08047-2|SP1;nc|ENSG00000185591|P08047-3|SP1;ENSG00000164651|ENST00000418710|SP8;ENSG00000204335|ENST00000375281|SP5;nc|ENSG00000164651|Q8IXZ3|SP8;ENSG00000217236|ENST00000394967|SP9;nc|ENSG00000164651|Q8IXZ3-1|SP8;nc|ENSG00000164651|Q8IXZ3-2|SP8;ENSG00000185591|ENST00000327443|SP1	nc|ENSG00000172845|Q02447-6|SP3	nc|ENSG00000172845|Q02447-6|SP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.7478942871094	2	452.747985	903.481417	0.061222	2.7718E-05	-0.36163	-0.00016373	-0.30041	-0.00013601	452.74782086740106	16.482	0.48206	16.482	16.267	16.749	0					38	16	3	0	0	0	0.42077	1	1335	1335		15.847	0	1	133040			56205	6667	32268	32269	68638	68638					0.025815157259899024
VYGKTSHL	8	Unmodified	_VYGKTSHL_					0	0	0		nc|ENSG00000172845|Q02447-6|SP3;ENSG00000172845|ENST00000310015|SP3;nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-2|SP3;nc|ENSG00000172845|Q02447-3|SP3;nc|ENSG00000172845|Q02447-5|SP3;ENST00000465379.1_1_2:174774671-174778005:-|nuORF;ENSG00000105866|ENST00000222584|SP4;nc|ENSG00000185591|P08047-2|SP1;nc|ENSG00000185591|P08047-3|SP1;ENSG00000164651|ENST00000418710|SP8;ENSG00000204335|ENST00000375281|SP5;nc|ENSG00000164651|Q8IXZ3|SP8;ENSG00000217236|ENST00000394967|SP9;nc|ENSG00000164651|Q8IXZ3-1|SP8;nc|ENSG00000164651|Q8IXZ3-2|SP8;ENSG00000185591|ENST00000327443|SP1	nc|ENSG00000172845|Q02447-6|SP3	nc|ENSG00000172845|Q02447-6|SP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.7480773925781	2	452.747985	903.481417	-0.026875	-1.2168E-05	-0.054615	-2.4727E-05	-0.08149	-3.6894E-05	452.74801407249953	16.617	0.50006	16.503	16.275	16.775	-0.11434					39	17	3	0	0	0	0.34039	1	1376	1376		15.847	0	1	143740			56206	6667	32268	32269	68639	68639					0.025815157259899024
VYGLVPSLGS	10	Unmodified	_VYGLVPSLGS_					0	0	0		nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	nc|ENSG00000168060|Q9UQQ1-7|NAALADL1	nc|ENSG00000168060|Q9UQQ1-7|NAALADL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7842712402344	2	496.276575	990.538597	0.61157	0.00030351	0.56832	0.00028204	1.1799	0.00058555	496.2763751408744	85.171	1.7245	85.171	84.527	86.251	0					273	65	7	0	0	0	0.35558	1	22227	22227		11.64	0.52583	1	7209900			56207	6242	32269	32270	68640	68640					0.042949382117285495
VYGLVPSLGS	10	Unmodified	_VYGLVPSLGS_					0	0	0		nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	nc|ENSG00000168060|Q9UQQ1-7|NAALADL1	nc|ENSG00000168060|Q9UQQ1-7|NAALADL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7841796875	2	496.276575	990.538597	0.5959	0.00029573	0.60879	0.00030213	1.2047	0.00059786	496.2763676872391	85.072	2.6204	85.153	84.101	86.722	0.080879					302	102	7	0	0	0	0.35558	1	22188	22188		11.64	0.52583	1	6735700			56208	6242	32269	32270	68641	68641					0.042949382117285495
VYGLVPSLGS	10	Unmodified	_VYGLVPSLGS_					0	0	0		nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1	nc|ENSG00000168060|Q9UQQ1-7|NAALADL1	nc|ENSG00000168060|Q9UQQ1-7|NAALADL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.78424072265625	2	496.276575	990.538597	0.57126	0.0002835	0.68966	0.00034226	1.2609	0.00062577	496.27637494360044	85.148	2.2588	85.136	84.267	86.525	-0.01284					309	88	7	0	0	0	0.32673	1	22213	22213		16.942	5.8278	1	6441000			56209	6242	32269	32270	68642	68642					0.042949382117285495
VYGMDSLYKM	10	Unmodified	_VYGMDSLYKM_					0	0	0			REV__nc|ENSG00000080224|Q9UF33|EPHA6	REV__nc|ENSG00000080224|Q9UF33|EPHA6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.7802734375	2	603.78031	1205.54607	0.85732	0.00051763	-4.2451	-0.0025631	-3.3878	-0.0020455	603.7798829567413	55.865	0.90943	55.865	55.274	56.184	0					77	32	4	0	0	0	0.1715	1	13345	13345		36.127	5.4905	1	2081900	+		56210	13883	32270	32271	68643	68643					-0.04848413574541155
VYGNNVLNQVL	11	Unmodified	_VYGNNVLNQVL_					0	0	0			REV__ENST00000575277.1_1_16:67976556-67977014:-|nuORF	REV__ENST00000575277.1_1_16:67976556-67977014:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.5788269042969	3	411.559305	1231.65609	0.16986	6.9909E-05	-2.4176	-0.00099498	-2.2477	-0.00092507	411.55931557800875	28.93	0.97885	28.926	28.658	29.637	-0.0042572					55	33	3	0	0	0	0.33085	1	5322	5322		2.8433	0	1	101280	+		56211	19036	32271	32272	68644	68644					0.04952471080514442
VYGPFYANI	9	Unmodified	_VYGPFYANI_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.7762451171875	2	522.263468	1042.51238	0.40387	0.00021092	0.77226	0.00040332	1.1761	0.00061425	522.2637262451448	71.475	0.48766	71.532	71.269	71.757	0.05658					26	17	2	0	0	0	0.14099	1	18140	18140		42.095	26.247	1	305840			56212	6026	32272	32273	68645	68645					-0.007173309597874322
VYGPFYANI	9	Unmodified	_VYGPFYANI_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.7763671875	2	522.263468	1042.51238	0.51846	0.00027077	-0.010624	-5.5488E-06	0.50784	0.00026522	522.2635481334014	71.548	0.5038	71.521	71.262	71.765	-0.027275					29	17	2	0	0	0	0.10111	1	18173	18173		42.095	29.052	1	484950			56213	6026	32272	32273	68646	68646					-0.007173309597874322
VYGPLPQSF	9	Unmodified	_VYGPLPQSF_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.26409912109375	2	504.263468	1006.51238	0.28008	0.00014124	0.19246	9.7049E-05	0.47254	0.00023828	504.263931246481	65.424	1.8893	65.424	65.047	66.937	0					192	67	5	0	0	0	2.942E-07	5	16301	16260;16301;16344;16389;16611		168.66	87.046	1	24434000			56214	11999	32273	32274	68647;68648;68649;68650;68651	68648					0.009386690402379827
VYGPLPQSF	9	Unmodified	_VYGPLPQSF_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2641906738281	2	504.263468	1006.51238	-0.075461	-3.8052E-05	0.59072	0.00029788	0.51526	0.00025983	504.26410922581687	65.29	2.1872	65.379	65.006	67.194	0.088882					200	79	5	0	0	0	2.8439E-05	5	16259	16216;16259;16311;16351;16400		152.41	77.989	1	25424000			56215	11999	32273	32274	68652;68653;68654;68655;68656	68653					0.009386690402379827
VYGPLPQSF	9	Unmodified	_VYGPLPQSF_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.79779052734375	2	504.263468	1006.51238	0.42214	0.00021287	-0.71169	-0.00035888	-0.28955	-0.00014601	504.2630566621058	67.574	0.81704	67.652	67.183	68	0.078041					49	28	3	0	0	0	0.11486	1	17022	17022		48.346	14.243	1	180140			56216	11999	32273	32274	68657	68657					0.009386690402379827
VYGPLPQSF	9	Unmodified	_VYGPLPQSF_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.26397705078125	2	504.263468	1006.51238	0.25776	0.00012998	0.20434	0.00010304	0.46211	0.00023302	504.2639321816634	65.424	2.1933	65.413	65.048	67.241	-0.011337					201	79	5	0	0	0	0.00011048	6	16285	16285;16333;16385;16443;16509;16569		139.14	64.716	1	26127000			56217	11999	32273	32274	68658;68659;68660;68661;68662;68663	68658					0.009386690402379827
VYGQFTGQAL	10	Unmodified	_VYGQFTGQAL_					0	0	0		ENSG00000125618|ENST00000429538|PAX8;ENST00000485840.1_1_2:113984585-113993007:-|nuORF	ENSG00000125618|ENST00000429538|PAX8	ENSG00000125618|ENST00000429538|PAX8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.278076171875	2	542.277106	1082.53966	1.1924	0.00064659	1.3351	0.00072398	2.5274	0.0013706	542.2776461674257	56.262	0.68108	56.243	55.991	56.672	-0.019077					34	24	2	0	0	0	0.00018844	1	13490	13490		125.04	67.789	1	1490000			56218	3217	32274	32275	68664	68664					0.0016915258061089844
VYGQFTGQAL	10	Unmodified	_VYGQFTGQAL_					0	0	0		ENSG00000125618|ENST00000429538|PAX8;ENST00000485840.1_1_2:113984585-113993007:-|nuORF	ENSG00000125618|ENST00000429538|PAX8	ENSG00000125618|ENST00000429538|PAX8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	542.277106	1082.53966	1.0666	0.00057839	1.3609	0.00073796	2.4275	0.0013164	542.2774587079598	56.086	0.63646	56.157	55.958	56.595	0.070885	-0.02144	-8.5644E-05	NaN	114.19	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1204800			56219	3217	32274	32275							0.0016915258061089844
VYGQITVRM	9	Oxidation (M)	_VYGQITVRM(Oxidation (M))_		VYGQITVRM(1)		VYGQITVRM(72)	0	0	1		nc|ENSG00000278845|Q9BRJ2|MRPL45;ENSG00000278845|ENST00000613675|MRPL45	nc|ENSG00000278845|Q9BRJ2|MRPL45	nc|ENSG00000278845|Q9BRJ2|MRPL45	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.3006591796875	2	541.786784	1081.55902	-0.21514	-0.00011656	0.89441	0.00048458	0.67927	0.00036802	541.787361751923	35.197	0.40697	35.275	35.088	35.495	0.077381					23	14	2	0	0	0	0.015027	1	7034	7034		71.708	27.936	1	292950			56220	8747	32275	32276	68665	68665		922			0.021497855998404702
VYGRENLYS	9	Unmodified	_VYGRENLYS_					0	0	0			REV__ENST00000503698.1_1_5:38954866-38959404:-|nuORF	REV__ENST00000503698.1_1_5:38954866-38959404:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2689819335938	2	550.772188	1099.52982	0.54009	0.00029747	-2.2498	-0.0012391	-1.7097	-0.00094168	550.7707588883155	39.018	1.1385	39.117	38.598	39.736	0.099403					86	40	3	0	0	0	0.23784	1	8201	8201		19.257	1.1106	1	1307900	+		56221	17149	32276	32277	68666	68666					-0.015960354247681607
VYGSEVSLSL	10	Unmodified	_VYGSEVSLSL_					0	0	0		ENSG00000121053|ENST00000225371|EPX	ENSG00000121053|ENST00000225371|EPX	ENSG00000121053|ENST00000225371|EPX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7946166992188	2	527.276772	1052.53899	0.5115	0.0002697	-3.9229	-0.0020685	-3.4114	-0.0017988	527.2724168989938	86.433	0.15739	86.517	86.442	86.599	0.084251					11	6	3	0	0	0	0.31267	1	22728	22728		14.838	3.198	1	61685			56222	2982	32277	32278	68667	68667					0.014823131409002599
VYGSFASKL	9	Unmodified	_VYGSFASKL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2638244628906	2	486.263468	970.512382	0.39413	0.00019165	-0.20764	-0.00010097	0.18649	9.0682E-05	486.263540159847	45.303	1.7402	45.303	44.935	46.675	0					180	63	5	0	0	0	0.00010125	4	10108	10060;10108;10156;10207		140.63	75.398	1	19048000			56223	5158	32278	32279	68668;68669;68670;68671	68669					0.025946690402406603
VYGSFASKL	9	Unmodified	_VYGSFASKL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.26385498046875	2	486.263468	970.512382	0.35474	0.0001725	-0.1234	-6.0006E-05	0.23134	0.00011249	486.263574658226	44.975	1.5526	45.044	44.739	46.292	0.068569					189	55	5	0	0	0	0.00010125	4	10012	9963;10012;10056;10101		140.63	75.398	1	21705000			56224	5158	32278	32279	68672;68673;68674;68675	68673					0.025946690402406603
VYGSFASKL	9	Unmodified	_VYGSFASKL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.2639465332031	2	486.263468	970.512382	0.44352	0.00021567	-0.23727	-0.00011538	0.20625	0.00010029	486.26353431594725	44.956	1.5927	45.031	44.697	46.289	0.075047					183	58	6	0	0	0	0.00051734	4	10006	9960;10006;10050;10099		128.93	63.697	1	21141000			56225	5158	32278	32279	68676;68677;68678;68679	68677					0.025946690402406603
VYGSSMFVF	9	Oxidation (M)	_VYGSSM(Oxidation (M))FVF_		VYGSSM(1)FVF		VYGSSM(67)FVF	0	0	1		LZTR1|p.C566Afs*26|1|0.36|ENSG00000099949|chr22:20994638-20994638|T/-|frameshift_variant;ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1	LZTR1|p.C566Afs*26|1|0.36|ENSG00000099949|chr22:20994638-20994638|T/-|frameshift_variant	LZTR1|p.C566Afs*26|1|0.36|ENSG00000099949|chr22:20994638-20994638|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2872314453125	2	526.741511	1051.46847	0.40295	0.00021225	0.63889	0.00033653	1.0418	0.00054878	526.7414096073915	68.498	0.99506	68.57	68.134	69.129	0.071938					72	36	3	0	0	0	0.05508	1	17262	17262		67.344	37.119	1	715920			56226	1506	32279	32280	68680	68680		188			-0.055206834484124556
VYGTIPYSP	9	Unmodified	_VYGTIPYSP_					0	0	0			REV__L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|157|3|sense	REV__L1PA6_dup1506|chr4:68935331-68940692:+|1.1500603906558335|0.2790784098741498|2.04|521.0|157|3|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7662658691406	2	498.755475	995.496398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.74	1	63.732	63.232	64.232	-0.0085526								0	0	0	0.16935	1	15793	15793		30.225	0	1		+		56227	22815	32280	32281	68681	68681					-0.0015303719666235338
VYGTKWEF	8	Unmodified	_VYGTKWEF_					0	0	0		ENST00000523243.5_1_8:135490727-135577256:-|nuORF;ZFAT|p.A1128Pfs*2|1|0.14|ENSG00000066827|chr8:134509729-134509729|C/-|frameshift_variant;nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT	ENST00000523243.5_1_8:135490727-135577256:-|nuORF	ENST00000523243.5_1_8:135490727-135577256:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.255126953125	2	515.255643	1028.49673	0.24748	0.00012752	-1.0239	-0.00052756	-0.77641	-0.00040005	515.2549720177186	65.382	0.79556	65.382	65.076	65.871	0					74	28	4	0	0	0	0.21687	1	16315	16315		57.471	2.6978	1	1347400			56228	848	32281	32282	68682	68682					-0.016376174768311103
VYGTKWEF	8	Unmodified	_VYGTKWEF_					0	0	0		ENST00000523243.5_1_8:135490727-135577256:-|nuORF;ZFAT|p.A1128Pfs*2|1|0.14|ENSG00000066827|chr8:134509729-134509729|C/-|frameshift_variant;nc|ENSG00000066827|Q9P243-4|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT	ENST00000523243.5_1_8:135490727-135577256:-|nuORF	ENST00000523243.5_1_8:135490727-135577256:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2554321289062	2	515.255643	1028.49673	-0.16446	-8.4737E-05	-0.6764	-0.00034852	-0.84086	-0.00043326	515.2552409727001	65.329	0.74956	65.418	65.006	65.756	0.088882					63	27	3	0	0	0	0.22	1	16323	16323		39.957	9.3208	1	1419200			56229	848	32281	32282	68683	68683					-0.016376174768311103
VYGTLSDLL	9	Unmodified	_VYGTLSDLL_					0	0	0		ENST00000521458.5_1_8:25298091-25315747:-|nuORF;ENST00000526766.1_1_11:112051504-112052349:+|nuORF;ENSG00000104756|ENST00000221200|KCTD9	ENST00000521458.5_1_8:25298091-25315747:-|nuORF	ENST00000521458.5_1_8:25298091-25315747:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7509765625	2	490.768583	979.522613	0.17369	8.5241E-05	-0.70127	-0.00034416	-0.52758	-0.00025892	490.76822472584075	76.177	0.67348	76.231	75.992	76.665	0.053413					38	23	2	0	0	0	0.018829	1	19644	19644		81.613	3.4637	1	509110			56230	1911	32282	32283	68684	68684					0.03203231974816845
VYGTLSDLL	9	Unmodified	_VYGTLSDLL_					0	0	0		ENST00000521458.5_1_8:25298091-25315747:-|nuORF;ENST00000526766.1_1_11:112051504-112052349:+|nuORF;ENSG00000104756|ENST00000221200|KCTD9	ENST00000521458.5_1_8:25298091-25315747:-|nuORF	ENST00000521458.5_1_8:25298091-25315747:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.75048828125	2	490.768583	979.522613	0.37496	0.00018402	1.0177	0.00049943	1.3926	0.00068345	490.76943717095867	76.249	1.0946	76.218	75.588	76.682	-0.031487					63	39	2	0	0	0	0.037153	1	19648	19648		74.423	13.065	1	459200			56231	1911	32282	32283	68685	68685					0.03203231974816845
VYGTVFHI	8	Unmodified	_VYGTVFHI_					0	0	0		ENSG00000149124|ENST00000344743|GLYAT;nc|ENSG00000149124|Q6IB77-2|GLYAT	ENSG00000149124|ENST00000344743|GLYAT	ENSG00000149124|ENST00000344743|GLYAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7835998535156	2	468.252903	934.491253	0.76851	0.00035986	-0.22964	-0.00010753	0.53887	0.00025233	468.2527826378405	56.213	0.32512	56.194	55.942	56.267	-0.019081					16	11	2	0	0	0	0.26518	1	13431	13431		34.187	7.8461	1	477980			56232	4845	32283	32284	68686	68686					0.021387037313843393
VYHHLVETL	9	Unmodified	_VYHHLVETL_					0	0	0		nc|ENSG00000099998|P36269-3|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-3|GGT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8008422851562	2	555.800749	1109.58694	0.13763	7.6493E-05	0.016776	9.3239E-06	0.1544	8.5817E-05	555.800565529253	35.559	0.73163	35.559	35.2	35.932	0					48	26	2	0	0	0	0.0016131	1	7113	7113		114.94	73.104	1	679860			56233	1513	32284	32285	68687	68687					0.03653431851603273
VYHHLVETL	9	Unmodified	_VYHHLVETL_					0	0	0		nc|ENSG00000099998|P36269-3|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-3|GGT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.80078125	2	555.800749	1109.58694	0.13931	7.7429E-05	0.00084602	4.7022E-07	0.14016	7.7899E-05	555.800657810754	35.381	0.73864	35.456	35.182	35.921	0.075306					48	26	2	0	0	0	0.00207	1	7073	7073		109.63	69.672	1	678340			56234	1513	32284	32285	68688	68688					0.03653431851603273
VYHHLVETL	9	Unmodified	_VYHHLVETL_					0	0	0		nc|ENSG00000099998|P36269-3|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-3|GGT5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.800537109375	2	555.800749	1109.58694	-0.27124	-0.00015075	0.34762	0.00019321	0.076378	4.2451E-05	555.8007963515374	35.367	0.74846	35.445	35.141	35.889	0.077381					44	26	2	0	0	0	0.00097449	1	7061	7061		123.1	83.147	1	720290			56235	1513	32284	32285	68689	68689					0.03653431851603273
VYHHTFFEM	9	Oxidation (M)	_VYHHTFFEM(Oxidation (M))_		VYHHTFFEM(1)		VYHHTFFEM(78)	0	0	1		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.7680053710938	2	613.768591	1225.52263	-0.52001	-0.00031916	0.12671	7.7773E-05	-0.39329	-0.00024139	613.7686188072332	35.219	0.43939	35.219	35	35.439	0					27	15	2	0	0	0	0.01083	1	7065	7065		78.149	51.881	1	191910			56236	1389	32285	32286	68690	68690		173			-0.08111091296837003
VYHHTFFEM	9	Oxidation (M)	_VYHHTFFEM(Oxidation (M))_					0	0	1		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	613.768591	1225.52263	-0.53585	-0.00032889	0.16724	0.00010264	-0.36861	-0.00022624	613.7686158649252	35.157	0.38795	35.232	35.017	35.405	0.075306	0.0081959	-0.00020053	NaN	78.149	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176800			56237	1389	32285	32286				173			-0.08111091296837003
VYHHTFFEM	9	Oxidation (M)	_VYHHTFFEM(Oxidation (M))_					0	0	1		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	613.768591	1225.52263	-0.66965	-0.00041101	0.62962	0.00038644	-0.04003	-2.4569E-05	613.7690685141705	35.143	0.49392	35.22	34.947	35.441	0.077377	-0.0033486	0.00036706	NaN	78.149	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182460			56238	1389	32285	32286				173			-0.08111091296837003
VYHLSSIT	8	Unmodified	_VYHLSSIT_					0	0	0			REV__ENST00000399540.2_1_17:6905609-6905768:-|nuORF	REV__ENST00000399540.2_1_17:6905609-6905768:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.7677307128906	2	460.247818	918.481082	0.19461	8.9571E-05	-0.76378	-0.00035153	-0.56917	-0.00026196	460.2473247774423	60.429	0.43263	60.418	60.137	60.57	-0.011486					24	15	2	0	0	0	0.33245	1	14685	14685		13.508	4.1248	1	498520	+		56239	20692	32286	32287	68691	68691					0.01858096006139931
VYHNLKNVI	9	Unmodified	_VYHNLKNVI_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3173217773438	2	550.316566	1098.61858	0.77959	0.00042902	0.16646	9.1607E-05	0.94606	0.00052063	550.3166282240869	33.961	0.51936	33.961	33.7	34.22	0					42	18	3	0	0	0	0.0042343	1	6638	6638		92.491	56.447	1	659730			56240	1028	32287	32288	68692	68692					0.07321424605561333
VYHNLKNVI	9	Unmodified	_VYHNLKNVI_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3171997070312	2	550.316566	1098.61858	1.0395	0.00057205	0.02558	1.4077E-05	1.0651	0.00058613	550.3164947676369	33.744	0.57973	33.811	33.596	34.176	0.06636					42	20	3	0	0	0	0.0022761	1	6588	6588		108	71.953	1	615730			56241	1028	32287	32288	68693	68693					0.07321424605561333
VYHNLKNVI	9	Unmodified	_VYHNLKNVI_					0	0	0		ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;nc|ENSG00000074800|P06733-2|ENO1	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	ENST00000464920.1_1_1:8921421-8930582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3173828125	2	550.316566	1098.61858	0.27629	0.00015205	0.54771	0.00030141	0.824	0.00045346	550.3168543058757	33.773	0.54988	33.839	33.577	34.127	0.066704					46	19	3	0	0	0	0.0011817	1	6579	6579		120.45	84.406	1	628570			56242	1028	32287	32288	68694	68694					0.07321424605561333
VYHPTTANLT	10	Unmodified	_VYHPTTANLT_					0	0	0			REV__ENSG00000167306|ENST00000285039|MYO5B;REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.260009765625	2	558.787838	1115.56112	0.37732	0.00021084	-0.56317	-0.00031469	-0.18584	-0.00010385	559.2887043068329	49.675	0.41239	49.675	49.38	49.793	0					19	14	2	0	0	0	0.30079	1	11470	11470		20.454	1.1966	1	113490	+		56243	17375;18742	32288	32289	68695	68695					0.007965376093125087
VYHPTTANLT	10	Unmodified	_VYHPTTANLT_					0	0	0			REV__ENSG00000167306|ENST00000285039|MYO5B;REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__ENSG00000167306|ENST00000285039|MYO5B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	558.787838	1115.56112	0.18585	0.00010385	-1.2068	-0.00067435	-1.021	-0.0005705	558.7867818202989	49.557	0.36679	49.589	49.494	49.861	0.032043	-0.042707	-0.00059145	NaN	20.454	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130860	+		56244	17375;18742	32288	32289							0.007965376093125087
VYHRAEPETL	10	Unmodified	_VYHRAEPETL_					0	0	0			REV__ENST00000518921.1_1_8:63056787-63057258:-|nuORF	REV__ENST00000518921.1_1_8:63056787-63057258:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.1853332519531	3	405.543655	1213.60914	0.37038	0.0001502	0.38173	0.00015481	0.75211	0.00030501	405.54376362578705	36.447	0.37388	36.533	36.333	36.707	0.08625					16	12	2	0	0	0	0.31889	1	7421	7421		3.3196	0	1	58000	+		56245	21867	32289	32290	68696	68696					0.01087611529374044
VYHSSFHRY	9	Unmodified	_VYHSSFHRY_					0	0	0		ENST00000278612.8_1_11:108058836-108062880:-|nuORF;ENST00000610253.5_1_11:108058836-108093299:-|nuORF	ENST00000278612.8_1_11:108058836-108062880:-|nuORF	ENST00000278612.8_1_11:108058836-108062880:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.2861328125	2	598.285797	1194.55704	0.47231	0.00028258	0.39512	0.0002364	0.86743	0.00051897	598.2856215919388	66.851	0.47631	66.851	66.659	67.135	0					43	16	3	0	0	0	0.23007	1	16784	16784		19.257	4.0085	1	593730			56246	9107	32290	32291	68697	68697					-0.032455070937203345
VYIAESDGSF	10	Unmodified	_VYIAESDGSF_					0	0	0		ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	ENSG00000141385|ENST00000269143|AFG3L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2512817382812	2	544.250754	1086.48696	0.71512	0.00038921	0.32648	0.00017769	1.0416	0.00056689	544.2509176446878	72.503	0.92242	72.557	72.221	73.144	0.053841					76	33	3	0	0	0	0.33268	1	18551	18551		15.847	3.3156	1	1303100			56247	4374	32291	32292	68698	68698					-0.05282850272851647
VYIDKVRSL	9	Unmodified	_VYIDKVRSL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.2625732421875	2	546.824224	1091.63389	0.41819	0.00022868	-1.7352	-0.00094886	-1.317	-0.00072018	546.8246157436297	38.146	0.31466	38.146	37.98	38.295	0					26	10	3	0	0	0	0.17263	1	7935	7935		38.615	14.594	1	202710			56248	2498	32292	32293	68699	68699					0.09174291402769086
VYIDKVRSL	9	Unmodified	_VYIDKVRSL_					0	0	0		ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	ENSG00000113368|ENST00000261366|LMNB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.7696533203125	2	546.824224	1091.63389	0.49011	0.000268	-2.4107	-0.0013182	-1.9205	-0.0010502	546.8243895597976	38.038	0.48393	38.136	37.953	38.437	0.097527					35	16	3	0	0	0	0.24636	1	7952	7952		11.495	0	1	220410			56249	2498	32292	32293	68700	68700					0.09174291402769086
VYIDQTMVL	9	Oxidation (M)	_VYIDQTM(Oxidation (M))VL_		VYIDQTM(1)VL		VYIDQTM(120)VL	0	0	1		nc|ENSG00000114650|Q12770-3|SCAP;ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2809448242188	2	549.281	1096.54745	0.32802	0.00018017	0.3338	0.00018335	0.66182	0.00036353	549.2810272910681	61.118	0.76653	61.118	60.936	61.703	0					62	28	3	0	0	0	0.0010463	1	14983	14983		122.18	73.833	1	2976100			56250	2577	32293	32294	68701	68701		323			0.003035437858898149
VYIDQTMVL	9	Oxidation (M)	_VYIDQTM(Oxidation (M))VL_		VYIDQTM(1)VL		VYIDQTM(120)VL	0	0	1		nc|ENSG00000114650|Q12770-3|SCAP;ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2810668945312	2	549.281	1096.54745	0.41012	0.00022527	0.026336	1.4466E-05	0.43645	0.00023974	549.2809355171618	60.99	0.8629	61.087	60.896	61.759	0.096985					62	31	3	0	0	0	0.0010463	1	14950	14950		122.18	76.158	1	2861400			56251	2577	32293	32294	68702	68702		323			0.003035437858898149
VYIDQTMVL	9	Oxidation (M)	_VYIDQTM(Oxidation (M))VL_		VYIDQTM(1)VL		VYIDQTM(86)VL	0	0	1		nc|ENSG00000114650|Q12770-3|SCAP;ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2815551757812	2	549.281	1096.54745	0.8118	0.0004459	0.9775	0.00053692	1.7893	0.00098283	549.2814793500876	60.627	0.70469	60.724	60.245	60.949	0.096989					58	25	3	0	0	0	0.016005	1	14879	14879		85.642	43.802	1	2434300			56252	2577	32293	32294	68703	68703		323			0.003035437858898149
VYIDQTMVL	9	Oxidation (M)	_VYIDQTM(Oxidation (M))VL_		VYIDQTM(1)VL		VYIDQTM(120)VL	0	0	1		nc|ENSG00000114650|Q12770-3|SCAP;ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2815551757812	2	549.281	1096.54745	0.41076	0.00022562	0.32286	0.00017734	0.73362	0.00040296	549.2810562589971	61.12	0.83701	61.111	60.862	61.699	-0.0094528					63	30	3	0	0	0	0.0010463	1	14965	14965		122.18	73.833	1	3716600			56253	2577	32293	32294	68704	68704		323			0.003035437858898149
VYIDQTMVL	9	Oxidation (M)	_VYIDQTM(Oxidation (M))VL_		VYIDQTM(1)VL		VYIDQTM(54)VL	0	0	1		nc|ENSG00000114650|Q12770-3|SCAP;ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2813720703125	2	549.281	1096.54745	0.87029	0.00047804	0.93149	0.00051165	1.8018	0.00098969	549.281455841276	60.714	0.64228	60.705	60.275	60.918	-0.0094566					63	23	4	0	0	0	0.10058	1	14858	14858		53.833	15.859	1	2640700			56254	2577	32293	32294	68705	68705		323			0.003035437858898149
VYIDRVRSL	9	Unmodified	_VYIDRVRSL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.827880859375	2	560.827298	1119.64004	-0.066309	-3.7188E-05	0.17856	0.00010014	0.11225	6.2951E-05	560.8277427480526	38.728	1.3004	38.728	38.239	39.54	0					139	46	6	0	0	0	0.011693	2	8155	8103;8155		76.825	31.798	1	4844900			56255	5487	32294	32295	68706;68707	68707					0.08500809634278994
VYIDRVRSL	9	Unmodified	_VYIDRVRSL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8276977539062	2	560.827298	1119.64004	0.35086	0.00019677	-0.28874	-0.00016194	0.06212	3.4839E-05	560.827449411072	38.624	1.1235	38.715	38.264	39.388	0.090881					149	40	6	0	0	0	0.0032746	2	8043	8043;8096		100.09	48.461	1	4916800			56256	5487	32294	32295	68708;68709	68708					0.08500809634278994
VYIDRVRSL	9	Unmodified	_VYIDRVRSL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8272094726562	2	560.827298	1119.64004	0.39924	0.00022391	-0.06305	-3.536E-05	0.33619	0.00018855	560.8274240710455	38.665	1.1836	38.762	38.407	39.591	0.097527					90	42	3	0	0	0	0.0066776	3	8042	8042;8086;8139		84.522	40.75	1	4755900			56257	5487	32294	32295	68710;68711;68712	68710					0.08500809634278994
VYIELFDQI	9	Unmodified	_VYIELFDQI_					0	0	0		ENST00000521993.2_1_8:37597892-37607371:+|nuORF;ENSG00000147475|ENST00000519638|ERLIN2;ENSG00000107566|ENST00000421367|ERLIN1	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	ENST00000521993.2_1_8:37597892-37607371:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7900390625	2	570.30279	1138.59103	0.62627	0.00035716	1.6669	0.00095061	2.2931	0.0013078	570.3033129938275	78.378	0.42572	78.436	78.31	78.736	0.058151					21	15	2	0	0	0	0.27532	1	20294	20294		12.532	0.89125	1	109430			56258	4768	32295	32296	68713	68713					0.02727476554673558
VYIGSTLSYF	10	Unmodified	_VYIGSTLSYF_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-7|P2RX7;nc|ENSG00000089041|Q99572-6|P2RX7;ENST00000539606.5_1_12:121592718-121615069:+|nuORF;nc|ENSG00000089041|Q99572-4|P2RX7;nc|ENSG00000089041|Q99572-8|P2RX7;ENST00000538011.5_1_12:121592718-121622602:+|nuORF	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.2949829101562	2	575.294965	1148.57538	0.64692	0.00037217	-1.8027	-0.0010371	-1.1558	-0.00066493	575.2945908737094	78.016	2.3719	78.016	76.812	79.184	0					155	91	4	0	0	0	1.2162E-08	1	20186	20186		172.91	108.67	1	1768000			56259	1341	32296	32297	68714	68714					0.007031900376205158
VYIGSTLSYF	10	Unmodified	_VYIGSTLSYF_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-7|P2RX7;nc|ENSG00000089041|Q99572-6|P2RX7;ENST00000539606.5_1_12:121592718-121615069:+|nuORF;nc|ENSG00000089041|Q99572-4|P2RX7;nc|ENSG00000089041|Q99572-8|P2RX7;ENST00000538011.5_1_12:121592718-121622602:+|nuORF	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.2947387695312	2	575.294965	1148.57538	0.67994	0.00039116	-1.6479	-0.000948	-0.96792	-0.00055684	575.294541949151	77.964	1.2934	78.022	77.626	78.919	0.058151					134	47	4	0	0	0	7.2273E-08	1	20120	20120		158.2	93.966	1	2008300			56260	1341	32296	32297	68715	68715					0.007031900376205158
VYIGSTLSYF	10	Unmodified	_VYIGSTLSYF_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-7|P2RX7;nc|ENSG00000089041|Q99572-6|P2RX7;ENST00000539606.5_1_12:121592718-121615069:+|nuORF;nc|ENSG00000089041|Q99572-4|P2RX7;nc|ENSG00000089041|Q99572-8|P2RX7;ENST00000538011.5_1_12:121592718-121622602:+|nuORF	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.2948608398438	2	575.294965	1148.57538	0.76515	0.00044019	-2.0198	-0.001162	-1.2546	-0.00072177	575.294510667109	78.057	1.7215	78.026	77.101	78.822	-0.030434					138	63	4	0	0	0	1.2162E-08	1	20141	20141		172.91	108.67	1	1955700			56261	1341	32296	32297	68716	68716					0.007031900376205158
VYIGVHVPF	9	Unmodified	_VYIGVHVPF_					0	0	0		ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;ENST00000428005.1_1_3:27465485-27525617:-|nuORF	ENSG00000033867|ENST00000454389|SLC4A7	ENSG00000033867|ENST00000454389|SLC4A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7896728515625	2	515.789653	1029.56475	0.58142	0.00029989	0.70964	0.00036602	1.2911	0.00066591	515.7896302767554	65.979	0.76656	65.979	65.686	66.453	0					66	27	3	0	0	0	0.0040737	2	16536	16488;16536		93.763	37.714	1	966020			56262	564	32297	32298	68717;68718	68718					0.051152521738458745
VYIGVHVPF	9	Unmodified	_VYIGVHVPF_					0	0	0		ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;ENST00000428005.1_1_3:27465485-27525617:-|nuORF	ENSG00000033867|ENST00000454389|SLC4A7	ENSG00000033867|ENST00000454389|SLC4A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.789794921875	2	515.789653	1029.56475	0.52813	0.00027241	0.95672	0.00049347	1.4849	0.00076587	515.7897167537891	65.856	0.74255	65.944	65.704	66.446	0.088882					61	26	3	0	0	0	0.0040737	2	16496	16442;16496		93.763	37.714	1	1041100			56263	564	32297	32298	68719;68720	68720					0.051152521738458745
VYIGVHVPF	9	Unmodified	_VYIGVHVPF_					0	0	0		ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;ENST00000428005.1_1_3:27465485-27525617:-|nuORF	ENSG00000033867|ENST00000454389|SLC4A7	ENSG00000033867|ENST00000454389|SLC4A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.789794921875	2	515.789653	1029.56475	0.31873	0.0001644	0.89784	0.0004631	1.2166	0.0006275	515.7898476944079	65.988	0.79421	65.974	65.665	66.46	-0.013596					63	28	3	0	0	0	0.0040737	2	16525	16473;16525		93.763	37.714	1	963170			56264	564	32297	32298	68721;68722	68722					0.051152521738458745
VYIHFWAL	8	Unmodified	_VYIHFWAL_					0	0	0		ENST00000601332.5_1_19:48846576-48867177:-|nuORF;ENST00000595720.5_1_19:48846576-48867177:-|nuORF;nc|ENSG00000161558|Q96AN5-2|TMEM143;ENSG00000161558|ENST00000293261|TMEM143	ENST00000601332.5_1_19:48846576-48867177:-|nuORF	ENST00000601332.5_1_19:48846576-48867177:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7113647460938	2	524.78437	1047.55419	0.50988	0.00026758	-3.1103	-0.0016323	-2.6005	-0.0013647	524.7815764907078	69.094	0.3851	69.094	68.872	69.257	0					17	13	2	0	0	0	0.33618	1	17393	17393		17.087	0.14425	1	94575			56265	5520	32298	32299	68723	68723					0.032312695194150365
VYIHLLEL	8	Unmodified	_VYIHLLEL_					0	0	0			REV__ENST00000488436.1_1_9:21017882-21026717:-|nuORF	REV__ENST00000488436.1_1_9:21017882-21026717:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.78851318359375	2	500.29731	998.580068	0.49943	0.00024986	-1.3611	-0.00068097	-0.8617	-0.0004311	500.7979133720897	82.943	0.1068	82.922	82.868	82.975	-0.020584					5	3	2	0	0	0	0.34185	1	21673	21673		10.183	0	1	67493	+		56266	18582	32299	32300	68724	68724					0.08072118971040254
VYIHTQKNVLI	11	Unmodified	_VYIHTQKNVLI_					0	0	0		ENSG00000126749|ENST00000599672|EMG1	ENSG00000126749|ENST00000599672|EMG1	ENSG00000126749|ENST00000599672|EMG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	443.7532958984375	3	443.2626	1326.76597	0.5244	0.00023245	-0.39239	-0.00017393	0.13201	5.8513E-05	443.5966466108231	47.266	0.72201	47.266	46.992	47.714	0					53	25	3	0	0	0	0.33189	1	10812	10812		5.8681	0	1	1003600			56267	3284	32300	32301	68725	68725					0.11565896419688215
VYIIGSSGF	9	Unmodified	_VYIIGSSGF_					0	0	0		ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.7502746582031	2	471.750193	941.485833	0.092769	4.3764E-05	0.57352	0.00027056	0.66628	0.00031432	471.75022655083086	67.846	0.45091	67.846	67.623	68.074	0					26	15	2	0	0	0	0.025459	1	17061	17061		77.984	43.882	1	273730			56268	4539	32301	32302	68726	68726					0.012749801489121637
VYIIGSSGF	9	Unmodified	_VYIIGSSGF_					0	0	0		ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7500915527344	2	471.750193	941.485833	0.33695	0.00015896	0.2249	0.00010609	0.56185	0.00026505	471.7499581243028	67.753	0.59103	67.831	67.628	68.219	0.078041					34	20	3	0	0	0	0.072564	1	17036	17036		60.39	22.238	1	265860			56269	4539	32301	32302	68727	68727					0.012749801489121637
VYIIGSSGF	9	Unmodified	_VYIIGSSGF_					0	0	0		ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	ENSG00000143653|ENST00000366510|SCCPDH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.7500915527344	2	471.750193	941.485833	0.20092	9.4783E-05	0.40799	0.00019247	0.60891	0.00028725	471.75008281707545	67.849	0.67231	67.833	67.478	68.151	-0.016296					39	23	2	0	0	0	0.072564	1	17050	17050		60.39	37.241	1	290960			56270	4539	32301	32302	68728	68728					0.012749801489121637
VYIKDLSSF	9	Unmodified	_VYIKDLSSF_					0	0	0		ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2894897460938	2	536.289682	1070.56481	0.70966	0.00038058	-0.50927	-0.00027312	0.20039	0.00010747	536.2892802908556	56.517	1.1044	56.517	55.907	57.012	0					70	40	3	0	0	0	0.0032746	2	13568	13568;13618		100.09	15.441	1	1524000			56271	1248	32302	32303	68729;68730	68729					0.03235207383158922
VYIKDLSSF	9	Unmodified	_VYIKDLSSF_					0	0	0		ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2900390625	2	536.289682	1070.56481	0.72749	0.00039015	-0.29213	-0.00015667	0.43536	0.00023348	536.2891840230553	56.427	0.71257	56.505	56.247	56.959	0.078674					66	26	3	0	0	0	0.0091837	2	13537	13537;13585		80.676	15.441	1	1845300			56272	1248	32302	32303	68731;68732	68731					0.03235207383158922
VYIKDLSSF	9	Unmodified	_VYIKDLSSF_					0	0	0		ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2897338867188	2	536.289682	1070.56481	1.0964	0.00058797	-0.3326	-0.00017837	0.76377	0.0004096	536.2893266571662	56.635	0.73711	56.616	56.352	57.09	-0.019081					62	26	3	0	0	0	0.0091837	1	13651	13651		80.676	15.441	1	1834700			56273	1248	32302	32303	68733	68733					0.03235207383158922
VYIKHPVSL	9	Unmodified	_VYIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.3157958984375	2	528.316035	1054.61752	0.62254	0.0003289	-0.92663	-0.00048955	-0.30409	-0.00016065	528.3161249768295	35.904	1.7665	35.904	35.575	37.342	0					217	63	5	0	0	0	9.2305E-05	5	7197	7197;7244;7283;7447;7498		142.08	71.094	1	43245000			56274	1486	32303	32304	68734;68735;68736;68737;68738	68734					0.09239210236660256
VYIKHPVSL	9	Unmodified	_VYIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.31591796875	2	528.316035	1054.61752	0.52693	0.00027838	-0.75499	-0.00039887	-0.22806	-0.00012049	528.31621169482	35.778	1.7591	35.861	35.54	37.3	0.082355					205	63	5	0	0	0	0.00045155	5	7159	7159;7201;7250;7390;7450		129.77	61.692	1	45770000			56275	1486	32303	32304	68739;68740;68741;68742;68743	68739					0.09239210236660256
VYIKHPVSL	9	Unmodified	_VYIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3159790039062	2	528.316035	1054.61752	0.58899	0.00031118	-0.89316	-0.00047187	-0.30416	-0.0001607	528.3161530895437	35.76	1.5985	35.846	35.537	37.135	0.086246					204	57	5	0	0	0	9.2305E-05	5	7148	7148;7190;7208;7294;7437		142.08	73.999	1	45912000			56276	1486	32303	32304	68744;68745;68746;68747;68748	68744					0.09239210236660256
VYILAMVFDM	10	Unmodified	_VYILAMVFDM_					0	0	0			REV__ENSG00000170412|ENST00000392627|GPRC5C	REV__ENSG00000170412|ENST00000392627|GPRC5C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.3035278320312	2	601.303421	1200.59229	0.73543	0.00044221	-0.3577	-0.00021508	0.37773	0.00022713	601.3032656649201	83.983	1.3131	83.983	83.681	84.994	0					152	51	4	0	0	0	0.18807	1	22015	22015		34.102	7.2188	1	3483000	+		56277	17579	32304	32305	68749	68749					1.651327556828619E-05
VYILAMVFDM	10	Unmodified	_VYILAMVFDM_					0	0	0			REV__ENSG00000170412|ENST00000392627|GPRC5C	REV__ENSG00000170412|ENST00000392627|GPRC5C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.3038330078125	2	601.303421	1200.59229	0.70918	0.00042643	-0.43978	-0.00026444	0.2694	0.00016199	601.3032531009059	83.932	1.4734	84.009	83.623	85.097	0.077095					162	59	4	0	0	0	0.18807	3	21985	21936;21985;22032		34.102	8.7487	1	3990400	+		56278	17579	32304	32305	68750;68751;68752	68751					1.651327556828619E-05
VYILAMVFDM	10	Unmodified	_VYILAMVFDM_					0	0	0			REV__ENSG00000170412|ENST00000392627|GPRC5C	REV__ENSG00000170412|ENST00000392627|GPRC5C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.3037719726562	2	601.303421	1200.59229	0.5769	0.00034689	-0.10727	-6.45E-05	0.46964	0.00028239	601.3033984718427	84.032	1.4694	84.015	83.747	85.217	-0.016823					162	62	4	0	0	0	0.18807	3	21997	21951;21997;22050		34.102	12.356	1	4505100	+		56279	17579	32304	32305	68753;68754;68755	68754					1.651327556828619E-05
VYILAMVFDM	10	Unmodified	_VYILAMVFDM_					0	0	0			REV__ENSG00000170412|ENST00000392627|GPRC5C	REV__ENSG00000170412|ENST00000392627|GPRC5C	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	601.303421	1200.59229	0.70918	0.00042643	-0.43978	-0.00026444	0.2694	0.00016199	601.3032531009059	83.932	1.4734	84.009	83.623	85.097	0.077095	0.0067403	-0.00019033	NaN	34.102	162	59	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3990400	+		56280	17579	32304	32305							1.651327556828619E-05
VYILQPEVI	9	Unmodified	_VYILQPEVI_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.3158569335938	2	537.3157	1072.61685	0.28231	0.00015169	-0.40859	-0.00021954	-0.12629	-6.7855E-05	537.3153535016376	76.079	1.0846	76.079	75.794	76.879	0					114	39	4	0	0	0	0.047483	1	19615	19615		53.833	19.73	1	3059600			56281	7983	32305	32306	68756	68756					0.08344370796953626
VYILQPEVI	9	Unmodified	_VYILQPEVI_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.315673828125	2	537.3157	1072.61685	0.28092	0.00015094	-0.56733	-0.00030484	-0.28641	-0.00015389	537.3152148729395	76.021	1.0487	76.074	75.782	76.831	0.053413					89	37	4	0	0	0	0.14961	1	19616	19616		41.84	21.386	1	2767200			56282	7983	32305	32306	68757	68757					0.08344370796953626
VYILQPEVI	9	Unmodified	_VYILQPEVI_					0	0	0		nc|ENSG00000197603|Q9H799-5|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.3158569335938	2	537.3157	1072.61685	0.50678	0.0002723	-0.41888	-0.00022507	0.087901	4.7231E-05	537.3153860566491	76.133	0.99967	76.101	75.829	76.828	-0.031487					99	36	5	0	0	0	0.0059482	2	19596	19596;19645		85.642	41.783	1	3171600			56283	7983	32305	32306	68758;68759	68758					0.08344370796953626
VYILRAQAI	9	Unmodified	_VYILRAQAI_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.8215942382812	2	523.821484	1045.62842	0.55985	0.00029326	-0.087219	-4.5687E-05	0.47263	0.00024757	523.8213703799092	51.523	1.083	51.523	51.271	52.354	0					110	39	4	0	0	0	5.6754E-05	3	12066	12015;12066;12118		147.83	90.36	1	6772700			56284	2497	32306	32307	68760;68761;68762	68761					0.10742612610920332
VYILRAQAI	9	Unmodified	_VYILRAQAI_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.8217163085938	2	523.821484	1045.62842	0.44531	0.00023326	0.01819	9.5283E-06	0.4635	0.00024279	523.821437475168	51.481	1.5173	51.528	51.245	52.763	0.046577					130	55	4	0	0	0	4.4046E-07	3	12050	12006;12050;12104		162.95	94.87	1	6841200			56285	2497	32306	32307	68763;68764;68765	68764					0.10742612610920332
VYILRAQAI	9	Unmodified	_VYILRAQAI_					0	0	0		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.8216552734375	2	523.821484	1045.62842	0.43382	0.00022724	0.082312	4.3117E-05	0.51613	0.00027036	523.8214555997174	51.612	1.2101	51.622	51.321	52.531	0.0095634					125	44	4	0	0	0	4.4046E-07	2	12077	12077;12119		162.95	94.87	1	6912800			56286	2497	32306	32307	68766;68767	68766					0.10742612610920332
VYINEVRVI	9	Unmodified	_VYINEVRVI_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8241577148438	2	552.824224	1103.63389	0.62816	0.00034726	0.068174	3.7688E-05	0.69633	0.00038495	552.8241020851519	54.37	0.78128	54.37	54.136	54.917	0					67	28	4	0	0	0	0.003673	1	12886	12886		96.936	56.986	1	1578400			56287	12810	32307	32308	68768	68768					0.08622291402753035
VYINEVRVI	9	Unmodified	_VYINEVRVI_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.8244018554688	2	552.824224	1103.63389	0.62854	0.00034747	0.11489	6.3515E-05	0.74343	0.00041099	552.8241257552733	54.34	0.72056	54.404	54.142	54.863	0.063206					65	26	3	0	0	0	0.0023895	1	12869	12869		107.1	67.15	1	1543400			56288	12810	32307	32308	68769	68769					0.08622291402753035
VYINEVRVI	9	Unmodified	_VYINEVRVI_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.8244018554688	2	552.824224	1103.63389	0.55094	0.00030457	0.00078148	4.3202E-07	0.55172	0.000305	552.824070845862	54.473	0.67453	54.457	54.197	54.872	-0.015923					60	23	4	0	0	0	0.0013924	2	12962	12912;12962		117.76	70.012	1	1711000			56289	12810	32307	32308	68770;68771	68771					0.08622291402753035
VYINLANLI	9	Unmodified	_VYINLANLI_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3;TMTC3|p.N621Sfs*8|1|0.03|ENSG00000139324|chr12:88192757-88192758|-/TCGAA|frameshift_variant;TMTC3|p.S557Tfs*2|1|0.32|ENSG00000139324|chr12:88190586-88190586|G/-|frameshift_variant	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.807861328125	2	516.808042	1031.60153	0.39936	0.00020639	-0.46694	-0.00024132	-0.067576	-3.4924E-05	516.8076268274223	90.442	0.54343	90.442	90.184	90.727	0					91	39	3	0	0	0	0.00077644	2	23978	23939;23978		125.62	68.153	1	398830			56290	4229	32308	32309	68772;68773	68773					0.08699503999741864
VYINLANLI	9	Unmodified	_VYINLANLI_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3;TMTC3|p.N621Sfs*8|1|0.03|ENSG00000139324|chr12:88192757-88192758|-/TCGAA|frameshift_variant;TMTC3|p.S557Tfs*2|1|0.32|ENSG00000139324|chr12:88190586-88190586|G/-|frameshift_variant	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.80810546875	2	516.808042	1031.60153	0.32832	0.00016968	-0.25923	-0.00013397	0.069091	3.5707E-05	516.8077463326358	90.283	0.55287	90.374	90.137	90.69	0.090675					94	41	3	0	0	0	0.0017972	2	23888	23888;23928		112.59	70.499	1	469750			56291	4229	32308	32309	68774;68775	68774					0.08699503999741864
VYINLANLI	9	Unmodified	_VYINLANLI_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3;TMTC3|p.N621Sfs*8|1|0.03|ENSG00000139324|chr12:88192757-88192758|-/TCGAA|frameshift_variant;TMTC3|p.S557Tfs*2|1|0.32|ENSG00000139324|chr12:88190586-88190586|G/-|frameshift_variant	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.8075561523438	2	516.808042	1031.60153	0.38282	0.00019785	0.2223	0.00011489	0.60513	0.00031274	516.8076142117847	90.397	0.57233	90.397	90.186	90.758	0.0003891					94	40	4	0	0	0	0.0011817	3	23920	23920;23964;23994		120.45	65.677	1	434570			56292	4229	32308	32309	68776;68777;68778	68776					0.08699503999741864
VYINTAQEF	9	Unmodified	_VYINTAQEF_					0	0	0		ENSG00000095059|ENST00000210060|DHPS;nc|ENSG00000095059|P49366-3|DHPS;ENST00000600510.1_1_19:12786654-12786995:-|nuORF	ENSG00000095059|ENST00000210060|DHPS	ENSG00000095059|ENST00000210060|DHPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7691650390625	2	542.769114	1083.52368	1.0157	0.00055131	0.36226	0.00019662	1.378	0.00074793	542.7691617052595	55.857	0.72611	55.857	55.564	56.291	0					71	25	4	0	0	0	3.5809E-25	2	13376	13329;13376		249.11	170.96	1	4849100			56293	1446	32309	32310	68779;68780	68780					-0.014745536562941197
VYINTAQEF	9	Unmodified	_VYINTAQEF_					0	0	0		ENSG00000095059|ENST00000210060|DHPS;nc|ENSG00000095059|P49366-3|DHPS;ENST00000600510.1_1_19:12786654-12786995:-|nuORF	ENSG00000095059|ENST00000210060|DHPS	ENSG00000095059|ENST00000210060|DHPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.76953125	2	542.769114	1083.52368	0.93051	0.00050505	0.3769	0.00020457	1.3074	0.00070962	542.76920750882	55.809	0.73083	55.88	55.592	56.323	0.070885					73	26	4	0	0	0	9.0795E-24	1	13312	13312		232.37	147.1	1	5459100			56294	1446	32309	32310	68781	68781					-0.014745536562941197
VYINTAQEF	9	Unmodified	_VYINTAQEF_					0	0	0		ENSG00000095059|ENST00000210060|DHPS;nc|ENSG00000095059|P49366-3|DHPS;ENST00000600510.1_1_19:12786654-12786995:-|nuORF	ENSG00000095059|ENST00000210060|DHPS	ENSG00000095059|ENST00000210060|DHPS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.7691650390625	2	542.769114	1083.52368	1.0431	0.00056619	-0.18818	-0.00010214	0.85497	0.00046405	542.7688597037734	55.952	0.70691	55.933	55.646	56.352	-0.019077					71	25	4	0	0	0	4.6530000000000005E-33	2	13407	13360;13407		266.95	188.8	1	5031100			56295	1446	32309	32310	68782;68783	68783					-0.014745536562941197
VYIPEDPTFK	10	Unmodified	_VYIPEDPTFK_					0	0	0		ENSG00000140519|ENST00000268122|RHCG	ENSG00000140519|ENST00000268122|RHCG	ENSG00000140519|ENST00000268122|RHCG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.2319030761719	3	403.544773	1207.61249	-0.11805	-4.7637E-05	0.5179	0.000209	0.39986	0.00016136	403.54487757549117	29.919	0.70372	29.932	29.469	30.173	0.012266					36	23	2	0	0	0	0.31847	1	5296	5296		1.7423	0	1	105710			56296	4313	32310	32311	68784	68784					0.016988615833497533
VYIPGSNATL	10	Unmodified	_VYIPGSNATL_					0	0	0		ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000276547|ENST00000617380|PCDHGB5;ENSG00000253846|ENST00000398610|PCDHGA10;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000253537|ENST00000518325|PCDHGA7;ENSG00000253731|ENST00000517434|PCDHGA6;ENSG00000253159|ENST00000252085|PCDHGA12;ENSG00000081853|ENST00000394576|PCDHGA2;ENSG00000253485|ENST00000518069|PCDHGA5;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253910|ENST00000522605|PCDHGB2;ENSG00000253305|ENST00000520790|PCDHGB6;ENSG00000254122|ENST00000398594|PCDHGB7;ENSG00000262209|ENST00000576222|PCDHGB3;ENSG00000254221|ENST00000523390|PCDHGB1;ENSG00000253953|ENST00000519479|PCDHGB4;ENSG00000262576|ENST00000571252|PCDHGA4;ENSG00000242419|ENST00000306593|PCDHGC4;ENSG00000240764|ENST00000252087|PCDHGC5;ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000253873|ENST00000398587|PCDHGA11;ENSG00000261934|ENST00000573521|PCDHGA9	ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000242419|ENST00000306593|PCDHGC4;ENSG00000240764|ENST00000252087|PCDHGC5;ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000261934|ENST00000573521|PCDHGA9	ENSG00000240184|ENST00000308177|PCDHGC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7796020507812	2	517.779482	1033.54441	0.30372	0.00015726	-0.11106	-5.7507E-05	0.19266	9.9755E-05	517.7793432488968	59.183	0.78388	59.183	58.891	59.675	0					77	27	4	0	0	0	0.030754	2	14371	14371;14418		63.227	21.272	1	2583200			56297	8518;8546;8524;8603;8606;8664	32311	32312	68785;68786	68785					0.028980367233771176
VYIPGSNATL	10	Unmodified	_VYIPGSNATL_					0	0	0		ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000276547|ENST00000617380|PCDHGB5;ENSG00000253846|ENST00000398610|PCDHGA10;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000253537|ENST00000518325|PCDHGA7;ENSG00000253731|ENST00000517434|PCDHGA6;ENSG00000253159|ENST00000252085|PCDHGA12;ENSG00000081853|ENST00000394576|PCDHGA2;ENSG00000253485|ENST00000518069|PCDHGA5;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253910|ENST00000522605|PCDHGB2;ENSG00000253305|ENST00000520790|PCDHGB6;ENSG00000254122|ENST00000398594|PCDHGB7;ENSG00000262209|ENST00000576222|PCDHGB3;ENSG00000254221|ENST00000523390|PCDHGB1;ENSG00000253953|ENST00000519479|PCDHGB4;ENSG00000262576|ENST00000571252|PCDHGA4;ENSG00000242419|ENST00000306593|PCDHGC4;ENSG00000240764|ENST00000252087|PCDHGC5;ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000253873|ENST00000398587|PCDHGA11;ENSG00000261934|ENST00000573521|PCDHGA9	ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000242419|ENST00000306593|PCDHGC4;ENSG00000240764|ENST00000252087|PCDHGC5;ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000261934|ENST00000573521|PCDHGA9	ENSG00000240184|ENST00000308177|PCDHGC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7797241210938	2	517.779482	1033.54441	0.31068	0.00016087	0.031678	1.6402E-05	0.34236	0.00017727	517.7794367545357	59.052	0.72519	59.143	58.849	59.574	0.091301					72	25	4	0	0	0	0.014191	2	14329	14329;14378		78.06	21.272	1	2513900			56298	8518;8546;8524;8603;8606;8664	32311	32312	68787;68788	68787					0.028980367233771176
VYIPGSNATL	10	Unmodified	_VYIPGSNATL_					0	0	0		ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000276547|ENST00000617380|PCDHGB5;ENSG00000253846|ENST00000398610|PCDHGA10;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000253537|ENST00000518325|PCDHGA7;ENSG00000253731|ENST00000517434|PCDHGA6;ENSG00000253159|ENST00000252085|PCDHGA12;ENSG00000081853|ENST00000394576|PCDHGA2;ENSG00000253485|ENST00000518069|PCDHGA5;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253910|ENST00000522605|PCDHGB2;ENSG00000253305|ENST00000520790|PCDHGB6;ENSG00000254122|ENST00000398594|PCDHGB7;ENSG00000262209|ENST00000576222|PCDHGB3;ENSG00000254221|ENST00000523390|PCDHGB1;ENSG00000253953|ENST00000519479|PCDHGB4;ENSG00000262576|ENST00000571252|PCDHGA4;ENSG00000242419|ENST00000306593|PCDHGC4;ENSG00000240764|ENST00000252087|PCDHGC5;ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000253873|ENST00000398587|PCDHGA11;ENSG00000261934|ENST00000573521|PCDHGA9	ENSG00000240184|ENST00000308177|PCDHGC3;ENSG00000242419|ENST00000306593|PCDHGC4;ENSG00000240764|ENST00000252087|PCDHGC5;ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;ENSG00000261934|ENST00000573521|PCDHGA9	ENSG00000240184|ENST00000308177|PCDHGC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7798461914062	2	517.779482	1033.54441	0.39388	0.00020395	-0.10063	-5.2105E-05	0.29325	0.00015184	517.7793112559326	59.188	0.70617	59.173	58.86	59.566	-0.014267					74	23	4	0	0	0	0.040516	2	14360	14360;14401		61.09	20.851	1	2620100			56299	8518;8546;8524;8603;8606;8664	32311	32312	68789;68790	68789					0.028980367233771176
VYIPNKVLI	9	Unmodified	_VYIPNKVLI_					0	0	0		ENST00000504334.5_1_17:48627490-48633020:+|nuORF;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20;ENST00000503063.5_1_17:48629318-48633020:+|nuORF;ENST00000511937.5_1_17:48628543-48633020:+|nuORF	ENST00000504334.5_1_17:48627490-48633020:+|nuORF	ENST00000504334.5_1_17:48627490-48633020:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.8343505859375	2	529.83406	1057.65357	0.69292	0.00036713	0.077318	4.0966E-05	0.77024	0.0004081	529.8339773955607	58.673	0.66862	58.659	58.445	59.113	-0.014267					62	23	4	0	0	0	0.055495	1	14213	14213		50.855	20.63	1	1388800			56300	356	32312	32313	68791	68791					0.12704667413527204
VYIPNKVLI	9	Unmodified	_VYIPNKVLI_					0	0	0		ENST00000504334.5_1_17:48627490-48633020:+|nuORF;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20;ENST00000503063.5_1_17:48629318-48633020:+|nuORF;ENST00000511937.5_1_17:48628543-48633020:+|nuORF	ENST00000504334.5_1_17:48627490-48633020:+|nuORF	ENST00000504334.5_1_17:48627490-48633020:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	529.83406	1057.65357	0.5629	0.00029824	0.19561	0.00010364	0.75851	0.00040188	529.8340510215056	58.722	0.71508	58.722	58.5	59.215	0	0.028714	8.8591E-06	NaN	50.855	58	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1343500			56301	356	32312	32313							0.12704667413527204
VYIPNKVLI	9	Unmodified	_VYIPNKVLI_					0	0	0		ENST00000504334.5_1_17:48627490-48633020:+|nuORF;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20;ENST00000503063.5_1_17:48629318-48633020:+|nuORF;ENST00000511937.5_1_17:48628543-48633020:+|nuORF	ENST00000504334.5_1_17:48627490-48633020:+|nuORF	ENST00000504334.5_1_17:48627490-48633020:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	529.83406	1057.65357	0.45857	0.00024296	0.26394	0.00013984	0.72251	0.00038281	529.834136184238	58.608	0.73836	58.699	58.418	59.156	0.091305	0.0060889	8.1266E-05	NaN	50.855	64	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1285700			56302	356	32312	32313							0.12704667413527204
VYIPSRVALIL	11	Unmodified	_VYIPSRVALIL_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.392333984375	2	622.392273	1242.76999	0.38679	0.00024074	-0.26559	-0.0001653	0.1212	7.5433E-05	622.3920385241105	72.936	0.85519	72.936	72.696	73.551	0					89	30	4	0	0	0	0.0083345	2	18630	18586;18630		73.196	40.411	1	3855100			56303	2568	32313	32314	68792;68793	68793					0.15831985913405333
VYIPSRVALIL	11	Unmodified	_VYIPSRVALIL_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3922119140625	2	622.392273	1242.76999	0.048969	3.0478E-05	0.079146	4.926E-05	0.12811	7.9737E-05	622.3922905627489	72.938	1.1161	72.992	72.681	73.797	0.053833					117	40	5	0	0	0	0.0072124	3	18644	18555;18603;18644		75.571	42.785	1	3844800			56304	2568	32313	32314	68794;68795;68796	68796					0.15831985913405333
VYIPSRVALIL	11	Unmodified	_VYIPSRVALIL_					0	0	0		ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3921508789062	2	622.392273	1242.76999	0.33208	0.00020669	-0.15273	-9.5056E-05	0.17936	0.00011163	622.3921163517825	73.002	0.87365	72.972	72.738	73.611	-0.029297					95	31	5	0	0	0	0.0083345	2	18629	18586;18629		73.196	40.411	1	3355100			56305	2568	32313	32314	68797;68798	68798					0.15831985913405333
VYIQDLDEI	9	Unmodified	_VYIQDLDEI_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.775634765625	2	554.282054	1106.54956	0.15975	8.8549E-05	0.064223	3.5597E-05	0.22398	0.00012415	554.2817690290071	69.382	0.74809	69.382	69.147	69.895	0					40	26	3	0	0	0	0.13643	1	17586	17586		45.7	26.261	1	601710			56306	2426	32314	32315	68799	68799					0.000542957953257428
VYIQDLDEI	9	Unmodified	_VYIQDLDEI_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.7760620117188	2	554.282054	1106.54956	0.27042	0.00014989	0.26608	0.00014748	0.5365	0.00029737	554.281761823189	69.338	0.78976	69.404	69.178	69.967	0.066048					40	27	3	0	0	0	0.075356	1	17564	17564		63.961	32.692	1	528810			56307	2426	32314	32315	68800	68800					0.000542957953257428
VYIQDLDEI	9	Unmodified	_VYIQDLDEI_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.7763061523438	2	554.282054	1106.54956	0.17071	9.4621E-05	-0.14338	-7.9472E-05	0.027329	1.5148E-05	554.2816274688632	69.47	0.83156	69.448	69.026	69.858	-0.022087					45	29	3	0	0	0	0.16853	1	17584	17584		38.176	11.907	1	570420			56308	2426	32314	32315	68801	68801					0.000542957953257428
VYIQEMFRF	9	Oxidation (M)	_VYIQEM(Oxidation (M))FRF_		VYIQEM(1)FRF		VYIQEM(40)FRF	0	0	1		nc|ENSG00000138613|Q8WW43-2|APH1B;ENSG00000138613|ENST00000261879|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	nc|ENSG00000138613|Q8WW43-2|APH1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.8242797851562	2	624.807716	1247.60088	-0.070217	-4.3872E-05	-0.37455	-0.00023402	-0.44477	-0.0002779	625.3083042606132	61.378	0.33789	61.369	61.243	61.581	-0.0094566					20	12	2	0	0	0	0.086462	1	15100	15100		40.239	19.786	1	291680			56309	4164	32315	32316	68802	68802		535			-0.01301658711622622
VYIQQTDDSL	10	Unmodified	_VYIQQTDDSL_					0	0	0		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.28857421875	2	591.287868	1180.56118	0.4186	0.00024751	0.57658	0.00034093	0.99518	0.00058844	591.2884241756541	70.338	0.8895	70.398	70.127	71.017	0.060783					100	31	5	0	0	0	0.062954	1	17833	17833		56.177	3.9087	1	2811700			56310	3500	32316	32317	68803	68803					-0.02187507181338333
VYIQQTDDSL	10	Unmodified	_VYIQQTDDSL_					0	0	0		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.2886962890625	2	591.287868	1180.56118	0.43578	0.00025767	0.66673	0.00039423	1.1025	0.0006519	591.288375598712	70.417	0.86438	70.393	70.106	70.971	-0.024872					96	30	4	0	0	0	0.10145	1	17805	17805		47.749	3.8904	1	2937300			56311	3500	32316	32317	68804	68804					-0.02187507181338333
VYIRGSKIRF	10	Unmodified	_VYIRGSKIRF_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	413.5835876464844	3	413.583785	1237.72953	-0.67694	-0.00027997	0.15677	6.4837E-05	-0.52017	-0.00021513	413.58387723023594	35.264	0.9695	35.264	34.775	35.745	0					111	34	5	0	0	0	0.020733	3	7036	7036;7087;7139		55.839	38.396	1	3315800			56312	1518	32317	32318	68805;68806;68807	68805					0.12017064313636183
VYIRGSKIRF	10	Unmodified	_VYIRGSKIRF_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5836486816406	3	413.583785	1237.72953	-0.34548	-0.00014288	-0.19734	-8.1619E-05	-0.54282	-0.0002245	413.5837218984393	35.159	0.83186	35.235	34.843	35.675	0.075306					94	29	4	0	0	0	0.049822	3	7016	7016;7063;7113		66.55	49.107	1	3587000			56313	1518	32317	32318	68808;68809;68810	68808					0.12017064313636183
VYIRGSKIRF	10	Unmodified	_VYIRGSKIRF_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.871337890625	2	619.87204	1237.72953	-0.58212	-0.00036084	0.011757	7.2878E-06	-0.57037	-0.00035355	619.8720940225907	35.184	0.41058	35.26	35.071	35.481	0.075306					36	14	4	0	0	0	0.26265	1	7021	7021		24.991	14.917	1	265020			56314	1518	32317	32318	68811	68811					0.12017064313636183
VYIRGSKIRF	10	Unmodified	_VYIRGSKIRF_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5836181640625	3	413.583785	1237.72953	-0.61413	-0.00025399	0.13805	5.7096E-05	-0.47608	-0.0001969	413.583869845444	35.174	0.90712	35.251	34.704	35.611	0.077377					105	32	5	0	0	0	0.026238	2	6997	6997;7048		57.477	40.034	1	3780000			56315	1518	32317	32318	68812;68813	68812					0.12017064313636183
VYIRGSKIRF	10	Unmodified	_VYIRGSKIRF_					0	0	0		nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	nc|ENSG00000286070|P62318-2|SNRPD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.810546875	2	619.87204	1237.72953	-0.66559	-0.00041258	0.37332	0.00023141	-0.29227	-0.00018117	619.8722456551305	35.17	0.38501	35.248	35.033	35.418	0.077377					36	13	4	0	0	0	0.30978	1	7004	7004		14.405	8.1996	1	239660			56316	1518	32317	32318	68814	68814					0.12017064313636183
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.7716674804688	2	580.772188	1159.52982	-1.1109	-0.00064517	-0.032173	-1.8685E-05	-1.1431	-0.00066386	580.772270693736	34.87	1.5091	34.87	34.556	36.065	0					173	54	5	0	0	0	8.2725E-18	3	6920	6868;6920;6970		225.63	179.61	1	13966000			56317	1924	32318	32319	68815;68816;68817	68816					-0.043560354247802024
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.7716064453125	2	580.772188	1159.52982	-1.2226	-0.00071006	0.061744	3.5859E-05	-1.1609	-0.0006742	580.7723037743924	34.757	1.4245	34.833	34.522	35.947	0.075306					173	51	5	0	0	0	8.2725E-18	5	6879	6834;6879;6925;6966;7090		225.63	170.86	1	13520000			56318	1924	32318	32319	68818;68819;68820;68821;68822	68819					-0.043560354247802024
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.7713623046875	2	580.772188	1159.52982	-0.53035	-0.00030801	-0.53047	-0.00030808	-1.0608	-0.0006161	580.7719588539237	34.731	1.6094	34.809	34.39	36	0.077381					182	57	5	0	0	0	1.9541E-11	4	6855	6812;6855;6904;6948		196.94	150.92	1	12418000			56319	1924	32318	32319	68823;68824;68825;68826	68824					-0.043560354247802024
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.829833984375	2	580.772188	1159.52982	0.073391	4.2623E-05	-2.9332	-0.0017035	-2.8598	-0.0016609	581.2710589971667	40.892	0.13107	40.99	40.91	41.041	0.097881					5	4	2	0	0	0	0.25526	1	8740	8740		7.9102	0.62092	1	74079			56320	1924	32318	32319	68827	68827					-0.043560354247802024
VYISHGTFF	9	Unmodified	_VYISHGTFF_					0	0	0		ENST00000443864.6_1_7:44664063-44684998:+|nuORF	ENST00000443864.6_1_7:44664063-44684998:+|nuORF	ENST00000443864.6_1_7:44664063-44684998:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7982177734375	2	535.768917	1069.52328	0.40073	0.0002147	0.63633	0.00034093	1.0371	0.00055562	535.769142569276	55.41	0.48396	55.41	55.174	55.658	0					33	17	2	0	0	0	0.15464	1	13186	13186		38.151	13.477	1	418900			56321	10570	32319	32320	68828	68828					-0.00869928585461821
VYISHGTFF	9	Unmodified	_VYISHGTFF_					0	0	0		ENST00000443864.6_1_7:44664063-44684998:+|nuORF	ENST00000443864.6_1_7:44664063-44684998:+|nuORF	ENST00000443864.6_1_7:44664063-44684998:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7981567382812	2	535.768917	1069.52328	0.55106	0.00029524	0.65248	0.00034958	1.2035	0.00064482	535.7693261434209	55.276	0.61509	55.347	55.188	55.804	0.070885					33	22	2	0	0	0	0.17949	1	13161	13161		32.117	7.4431	1	342700			56322	10570	32319	32320	68829	68829					-0.00869928585461821
VYISHGTFF	9	Unmodified	_VYISHGTFF_					0	0	0		ENST00000443864.6_1_7:44664063-44684998:+|nuORF	ENST00000443864.6_1_7:44664063-44684998:+|nuORF	ENST00000443864.6_1_7:44664063-44684998:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7979736328125	2	535.768917	1069.52328	0.46747	0.00025045	0.21245	0.00011382	0.67991	0.00036428	535.7691336711563	55.538	0.45988	55.519	55.29	55.75	-0.019077					37	16	3	0	0	0	0.17949	1	13231	13231		32.117	7.4431	1	336700			56323	10570	32319	32320	68830	68830					-0.00869928585461821
VYISKTTYI	9	Unmodified	_VYISKTTYI_					0	0	0		ENST00000480463.6_1_6:52943619-52957704:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9	ENST00000480463.6_1_6:52943619-52957704:+|nuORF	ENST00000480463.6_1_6:52943619-52957704:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7830810546875	2	544.305332	1086.59611	0.7415	0.00040361	-0.2914	-0.00015861	0.45011	0.000245	544.3050476942647	44.746	0.52892	44.746	44.462	44.991	0					54	18	5	0	0	0	0.089483	1	9970	9970		51.415	24.532	1	878970			56324	2414	32320	32321	68831	68831					0.05627780417262329
VYISKTTYI	9	Unmodified	_VYISKTTYI_					0	0	0		ENST00000480463.6_1_6:52943619-52957704:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9	ENST00000480463.6_1_6:52943619-52957704:+|nuORF	ENST00000480463.6_1_6:52943619-52957704:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3056030273438	2	544.305332	1086.59611	0.7641	0.0004159	0.54258	0.00029533	1.3067	0.00071123	544.3055172705242	44.563	0.87872	44.632	44.325	45.204	0.068569					94	31	5	0	0	0	0.013404	1	9902	9902		74.2	36.226	1	1038500			56325	2414	32320	32321	68832	68832					0.05627780417262329
VYISKTTYI	9	Unmodified	_VYISKTTYI_					0	0	0		ENST00000480463.6_1_6:52943619-52957704:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9	ENST00000480463.6_1_6:52943619-52957704:+|nuORF	ENST00000480463.6_1_6:52943619-52957704:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3058471679688	2	544.305332	1086.59611	0.73292	0.00039893	0.53465	0.00029102	1.2676	0.00068995	544.3055109577483	44.562	0.65483	44.637	44.307	44.962	0.075047					87	23	6	0	0	0	0.01909	1	9889	9889		65.474	27.5	1	1179400			56326	2414	32320	32321	68833	68833					0.05627780417262329
VYISNGQVL	9	Unmodified	_VYISNGQVL_					0	0	0		ENST00000487571.1_1_3:53922418-53925815:-|nuORF;ENSG00000113811|ENST00000495461|SELENOK	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7740173339844	2	496.7742	991.533846	0.5507	0.00027357	-0.32293	-0.00016042	0.22777	0.00011315	496.77393376559553	53.512	0.71307	53.512	53.201	53.914	0					55	26	3	0	0	0	0.0042343	1	12647	12647		92.491	50.397	1	788580			56327	2533	32321	32322	68834	68834					0.037740540689469526
VYISNGQVL	9	Unmodified	_VYISNGQVL_					0	0	0		ENST00000487571.1_1_3:53922418-53925815:-|nuORF;ENSG00000113811|ENST00000495461|SELENOK	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.77410888671875	2	496.7742	991.533846	0.36021	0.00017894	-0.24296	-0.0001207	0.11725	5.8248E-05	496.7739723832591	53.434	0.62394	53.49	53.221	53.845	0.056255					51	23	3	0	0	0	0.0083926	1	12645	12645		81.89	43.916	1	773570			56328	2533	32321	32322	68835	68835					0.037740540689469526
VYISNGQVL	9	Unmodified	_VYISNGQVL_					0	0	0		ENST00000487571.1_1_3:53922418-53925815:-|nuORF;ENSG00000113811|ENST00000495461|SELENOK	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	496.7742	991.533846	0.44869	0.0002229	-0.21233	-0.00010548	0.23636	0.00011742	496.7739332800687	53.556	0.75797	53.546	53.278	54.036	-0.0096054	0.03034	4.8477E-05	NaN	92.491	52	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	772960			56329	2533	32321	32322							0.037740540689469526
VYISSLALL	9	Unmodified	_VYISSLALL_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.7970275878906	2	489.797143	977.579734	0.51727	0.00025336	-0.47303	-0.00023169	0.044241	2.1669E-05	489.79692894606785	82.804	2.1243	82.804	82.313	84.437	0					243	82	5	0	0	0	2.3311E-08	9	21605	21605;21652;21702;21756;21800;21849;21937;21955;22035		179.23	36.378	1	15362000			56330	2621	32322	32323	68836;68837;68838;68839;68840;68841;68842;68843;68844	68836					0.09004699251181592
VYISSLALL	9	Unmodified	_VYISSLALL_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.797119140625	2	489.797143	977.579734	0.44016	0.00021559	-0.3135	-0.00015355	0.12666	6.2039E-05	489.79702006540236	82.778	3.6134	82.851	82.314	85.928	0.073097					344	142	5	0	0	0	2.3311E-08	12	21554	21554;21597;21649;21695;21747;21793;21836;21897;21923;21937;21969;22150		179.23	41.645	1	15802000			56331	2621	32322	32323	68845;68846;68847;68848;68849;68850;68851;68852;68853;68854;68855;68856	68845					0.09004699251181592
VYISSLALL	9	Unmodified	_VYISSLALL_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.7970886230469	2	489.797143	977.579734	0.48205	0.00023611	-0.22787	-0.00011161	0.25418	0.0001245	489.7969387147828	82.898	4.859	82.878	82.369	87.228	-0.020584					295	196	2	0	0	0	2.3311E-08	9	21595	21595;21642;21692;21742;21789;21858;21935;21973;22172		179.23	36.378	1	15314000			56332	2621	32322	32323	68857;68858;68859;68860;68861;68862;68863;68864;68865	68857					0.09004699251181592
VYITGKEVF	9	Unmodified	_VYITGKEVF_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant;VPS13A|p.L1845Vfs*28|1|0.03|ENSG00000197969|chr9:77321285-77321286|-/GTACATT|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.2760620117188	2	528.292225	1054.5699	0.64662	0.00034161	1.7299	0.00091387	2.3765	0.0012555	528.2919975145396	49.341	0.76573	49.341	49.077	49.843	0					65	27	4	0	0	0	0.17277	1	11343	11343		27.629	5.8822	1	477310			56333	8020	32323	32324	68866	68866					0.04479511245813228
VYITGKEVF	9	Unmodified	_VYITGKEVF_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant;VPS13A|p.L1845Vfs*28|1|0.03|ENSG00000197969|chr9:77321285-77321286|-/GTACATT|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2760009765625	2	528.292225	1054.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.275	1	49.32	48.82	49.82	0.044891								0	0	0	0.18053	1	11340	11340		27.629	5.8822	1				56334	8020	32323	32324	68867	68867					0.04479511245813228
VYITGKEVF	9	Unmodified	_VYITGKEVF_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant;VPS13A|p.L1845Vfs*28|1|0.03|ENSG00000197969|chr9:77321285-77321286|-/GTACATT|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2760009765625	2	528.292225	1054.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.208	1	49.24	48.74	49.74	0.032043								0	0	0	0.18053	1	11311	11311		27.629	7.1752	1				56335	8020	32323	32324	68868	68868					0.04479511245813228
VYITRAQLM	9	Oxidation (M)	_VYITRAQLM(Oxidation (M))_		VYITRAQLM(1)		VYITRAQLM(100)	0	0	1		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.802490234375	2	555.802434	1109.59032	0.23481	0.00013051	0.1156	6.4248E-05	0.3504	0.00019476	555.8024593775119	38.913	0.37697	39.006	38.76	39.137	0.092674					37	13	3	0	0	0	0.0032746	1	8178	8178		100.09	60.133	1	1290500			56336	5496	32324	32325	68869	68869		660			0.03990358633950564
VYITRAQLM	9	Oxidation (M)	_VYITRAQLM(Oxidation (M))_		VYITRAQLM(1)		VYITRAQLM(100)	0	0	1		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8026733398438	2	555.802434	1109.59032	0.43598	0.00024232	-0.27679	-0.00015384	0.15919	8.8479E-05	555.802366745749	38.891	0.3925	38.991	38.735	39.128	0.099403					36	13	3	0	0	0	0.0032746	1	8170	8170		100.09	67.305	1	1140000			56337	5496	32324	32325	68870	68870		660			0.03990358633950564
VYITRAQLM	9	Oxidation (M)	_VYITRAQLM(Oxidation (M))_					0	0	1		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	555.802434	1109.59032	-0.069861	-3.8829E-05	0.37946	0.00021091	0.3096	0.00017208	555.8026194474309	38.97	0.45228	38.97	38.711	39.164	0	-0.13274	0.00042558	NaN	100.09	42	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1369200			56338	5496	32324	32325				660			0.03990358633950564
VYITRAQLM	9	Oxidation (M)	_VYITRAQLM(Oxidation (M))_					0	0	1		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	555.802434	1109.59032	-0.034534	-1.9194E-05	0.33312	0.00018515	0.29859	0.00016596	555.8025481808845	39.351	0.83221	39.351	39.164	39.996	0	0.1307	0.0001022	NaN	100.09	59	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1132800			56339	5496	32324	32325				660			0.03990358633950564
VYITRAQLM	9	Oxidation (M)	_VYITRAQLM(Oxidation (M))_					0	0	1		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	555.802434	1109.59032	0.13785	7.662E-05	0.18933	0.00010523	0.32719	0.00018185	555.8024763471642	39.227	0.75054	39.319	39.137	39.887	0.09267	0.099019	-5.7637E-05	NaN	100.09	50	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1329900			56340	5496	32324	32325				660			0.03990358633950564
VYITRAQLM	9	Oxidation (M)	_VYITRAQLM(Oxidation (M))_					0	0	1		ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	ENSG00000160877|ENST00000292431|NACC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	555.802434	1109.59032	0.32868	0.00018268	-0.091374	-5.0786E-05	0.2373	0.00013189	555.8023511745596	39.233	0.68768	39.332	39.1	39.788	0.099407	0.22956	-9.7799E-05	NaN	100.09	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1530500			56341	5496	32324	32325				660			0.03990358633950564
VYIWCFALI	9	Unmodified	_VYIWCFALI_					0	0	0			REV__ENSG00000168216|ENST00000649934|LMBRD1	REV__ENSG00000168216|ENST00000649934|LMBRD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3003540039062	2	564.301539	1126.58852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.38	1	53.436	52.936	53.936	0.056255								0	0	0	0.22457	1	12599	12599		14.582	0	1		+		56342	17446	32325	32326	68871	68871					0.03029349615985666
VYIWLHSL	8	Unmodified	_VYIWLHSL_					0	0	0		nc|ENSG00000143147|Q8N6U8-2|GPR161;ENST00000493800.1_1_1:168059784-168074118:-|nuORF;ENSG00000143147|ENST00000682931|GPR161;nc|ENSG00000143147|Q8N6U8-6|GPR161;nc|ENSG00000143147|Q8N6U8-3|GPR161;nc|ENSG00000143147|Q8N6U8-5|GPR161;nc|ENSG00000143147|Q8N6U8-4|GPR161	nc|ENSG00000143147|Q8N6U8-2|GPR161	nc|ENSG00000143147|Q8N6U8-2|GPR161	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2724609375	2	515.789653	1029.56475	0.48273	0.00024899	-3.0448	-0.0015705	-2.5621	-0.0013215	515.788048902828	47.704	0.49217	47.752	47.374	47.866	0.047523					41	17	3	0	0	0	0.29134	1	10846	10846		26.341	3.605	1	1267600			56343	4481	32326	32327	68872	68872					0.051152521738458745
VYIYGLYMD	9	Unmodified	_VYIYGLYMD_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.7943725585938	2	568.770268	1135.52598	0.3985	0.00022666	0.2516	0.0001431	0.6501	0.00036976	568.7705635253243	58.046	0.24398	58.132	57.945	58.189	0.085621					12	8	2	0	0	0	0.25811	1	14022	14022		5.2307	0	1	81394			56344	3175	32327	32328	68873	68873					-0.03635841242839888
VYKAAAKVTF	10	Unmodified	_VYKAAAKVTF_					0	0	0			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3052978515625	2	549.321317	1096.62808	0.36569	0.00020088	-0.52502	-0.0002884	-0.15933	-8.7522E-05	549.3210465246652	67.07	0.48189	67.07	66.856	67.338	0					28	16	2	0	0	0	0.36002	1	16773	16773		10.824	0	1	190300	+		56345	13908	32328	32329	68874	68874					0.08363192891079052
VYKAFVDNY	9	Unmodified	_VYKAFVDNY_					0	0	0		nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;ENST00000573325.1_1_17:986639-994967:-|nuORF	nc|ENSG00000159842|Q12979-4|ABR	nc|ENSG00000159842|Q12979-4|ABR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.2789306640625	2	559.779482	1117.54441	0.548	0.00030676	-1.4938	-0.0008362	-0.94581	-0.00052945	559.7797463413231	44.754	1.2833	44.754	44.383	45.666	0					111	43	5	0	0	0	0.1558	1	10061	10061		34.932	13.395	1	2399400			56346	5426	32329	32330	68875	68875					-0.009659632766215509
VYKAFVMETF	10	Oxidation (M)	_VYKAFVM(Oxidation (M))ETF_		VYKAFVM(1)ETF		VYKAFVM(120)ETF	0	0	1		ENSG00000105677|ENST00000222284|TMEM147;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENST00000477168.6_1_19:36037622-36038346:+|nuORF	ENSG00000105677|ENST00000222284|TMEM147	ENSG00000105677|ENST00000222284|TMEM147	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.809814453125	2	625.809925	1249.6053	0.53938	0.00033755	-0.5131	-0.0003211	0.026289	1.6452E-05	625.8094888374011	53.539	0.95565	53.539	53.259	54.214	0					88	35	4	0	0	0	0.0012277	1	12714	12714		117.76	95.024	1	1718300			56347	2008	32330	32331	68876	68876		248			-0.00952194288697683
VYKAFVMETF	10	Oxidation (M)	_VYKAFVM(Oxidation (M))ETF_		VYKAFVM(1)ETF		VYKAFVM(130)ETF	0	0	1		ENSG00000105677|ENST00000222284|TMEM147;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENST00000477168.6_1_19:36037622-36038346:+|nuORF	ENSG00000105677|ENST00000222284|TMEM147	ENSG00000105677|ENST00000222284|TMEM147	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.8092041015625	2	625.809925	1249.6053	-0.05323	-3.3312E-05	0.021978	1.3754E-05	-0.031252	-1.9558E-05	625.8097561293871	53.489	0.67987	53.546	53.3	53.98	0.056259					80	25	4	0	0	0	0.00014398	1	12608	12608		132.38	114.23	1	2153400			56348	2008	32330	32331	68877	68877		248			-0.00952194288697683
VYKAFVMETF	10	Oxidation (M)	_VYKAFVM(Oxidation (M))ETF_		VYKAFVM(1)ETF		VYKAFVM(130)ETF	0	0	1		ENSG00000105677|ENST00000222284|TMEM147;nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENST00000477168.6_1_19:36037622-36038346:+|nuORF	ENSG00000105677|ENST00000222284|TMEM147	ENSG00000105677|ENST00000222284|TMEM147	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.8103637695312	2	625.809925	1249.6053	0.29058	0.00018184	-0.36597	-0.00022903	-0.075397	-4.7184E-05	625.8095207496965	53.767	0.83016	53.757	53.427	54.258	-0.0096054					88	30	4	0	0	0	0.00013576	2	12677	12677;12778		132.38	108.59	1	1919000			56349	2008	32330	32331	68878;68879	68878		248			-0.00952194288697683
VYKCVNWLA	9	Unmodified	_VYKCVNWLA_					0	0	0			REV__ENST00000254322.2_1_19:14625750-14625894:-|nuORF	REV__ENST00000254322.2_1_19:14625750-14625894:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.8089599609375	2	548.28642	1094.55829	0.3345	0.0001834	-2.3369	-0.0012813	-2.0024	-0.0010979	548.2850046198124	34.218	0.17184	34.218	34.164	34.336	0					7	5	2	0	0	0	0.25622	1	6731	6731		7.2892	0.93513	1	51944	+		56350	19541	32331	32332	68880	68880					0.014789909508181154
VYKFRFNH	8	Unmodified	_VYKFRFNH_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7962036132812	2	555.795801	1109.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.93	1	115.93	115.43	116.43	0								0	0	0	0.38004	1	30031	30031		0.69038	0	1		+	+	56351	13261	32332	32333	68881	68881					0.026642886369018015
VYKFRFNH	8	Unmodified	_VYKFRFNH_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7967529296875	2	555.795801	1109.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.97	1	115.97	115.47	116.47	0								0	0	0	0.38004	1	30041	30041		0.69038	0	1		+	+	56352	13261	32332	32333	68882	68882					0.026642886369018015
VYKFRFNH	8	Unmodified	_VYKFRFNH_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.79638671875	2	555.795801	1109.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.9	1	116.9	116.4	117.4	0								0	0	0	0.37724	1	30250	30250		2.3027	0.9732	1		+	+	56353	13261	32332	32333	68883	68883					0.026642886369018015
VYKFRFNH	8	Unmodified	_VYKFRFNH_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7967529296875	2	555.795801	1109.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.96	1	117.96	117.46	118.46	0								0	0	0	0.38004	1	30487	30487		0.69038	0	1		+	+	56354	13261	32332	32333	68884	68884					0.026642886369018015
VYKFRFNH	8	Unmodified	_VYKFRFNH_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.796630859375	2	555.795801	1109.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.94	1	119.94	119.44	120.44	0								0	0	0	0.38004	1	30923	30923		0.69038	0	1		+	+	56355	13261	32332	32333	68885	68885					0.026642886369018015
VYKFRFNH	8	Unmodified	_VYKFRFNH_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.796630859375	2	555.795801	1109.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.71	1	115.73	115.23	116.23	0.018738								0	0	0	0.38004	1	30050	30050		0.69038	0	1		+	+	56356	13261	32332	32333	68886	68886					0.026642886369018015
VYKFRFNH	8	Unmodified	_VYKFRFNH_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7967529296875	2	555.795801	1109.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.01	1	118.04	117.54	118.54	0.023476								0	0	0	0.37664	1	30572	30572		2.5775	0	1		+	+	56357	13261	32332	32333	68887	68887					0.026642886369018015
VYKFRFNH	8	Unmodified	_VYKFRFNH_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7955322265625	2	555.795801	1109.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.56	1	118.59	118.09	119.09	0.026253								0	0	0	0.38004	1	30699	30699		0.69038	0	1		+	+	56358	13261	32332	32333	68888	68888					0.026642886369018015
VYKFRFNH	8	Unmodified	_VYKFRFNH_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7969970703125	2	555.795801	1109.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.08	1	119.11	118.61	119.61	0.026253								0	0	0	0.38004	1	30814	30814		0.69038	0	1		+	+	56359	13261	32332	32333	68889	68889					0.026642886369018015
VYKFRFNH	8	Unmodified	_VYKFRFNH_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7962646484375	2	555.795801	1109.57705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.91	1	119.94	119.44	120.44	0.027756								0	0	0	0.38004	1	30997	30997		0.69038	0	1		+	+	56360	13261	32332	32333	68890	68890					0.026642886369018015
VYKGAKELI	9	Unmodified	_VYKGAKELI_					0	0	0			REV__ENSG00000129347|ENST00000312962|KRI1	REV__ENSG00000129347|ENST00000312962|KRI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.77740478515625	2	510.808042	1019.60153	0.78556	0.00040127	-0.76307	-0.00038978	0.02249	1.1488E-05	510.8075590879456	50.679	0.35363	50.679	50.569	50.922	0					21	12	2	0	0	0	0.22061	1	11773	11773		24.021	8.1734	1	249940	+		56361	15412	32333	32334	68891	68891					0.09251503999769284
VYKGEEATF	9	Unmodified	_VYKGEEATF_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7830810546875	2	522.25584	1042.49713	0.68407	0.00035726	0.77388	0.00040416	1.458	0.00076142	522.2559245458456	32.221	0.73921	32.221	32.01	32.749	0					64	26	3	0	0	0	0.0069488	1	6104	6104		96.111	39.934	1	905460			56362	1047	32334	32335	68892	68892					-0.022422425476406715
VYKGEEATF	9	Unmodified	_VYKGEEATF_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7830200195312	2	522.25584	1042.49713	0.70299	0.00036714	0.7091	0.00037033	1.4121	0.00073748	522.2559661197289	32.13	0.99145	32.172	31.968	32.96	0.042362					69	35	3	0	0	0	0.008707	1	6076	6076		88.954	32.777	1	1030700			56363	1047	32334	32335	68893	68893					-0.022422425476406715
VYKGEEATF	9	Unmodified	_VYKGEEATF_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7831420898438	2	522.25584	1042.49713	0.46	0.00024024	0.87742	0.00045824	1.3374	0.00069847	522.25603278732	32.102	0.77715	32.143	31.949	32.726	0.040989					69	27	4	0	0	0	0.016005	1	6084	6084		85.642	29.464	1	872490			56364	1047	32334	32335	68894	68894					-0.022422425476406715
VYKILSTHL	9	Unmodified	_VYKILSTHL_					0	0	0		ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2908325195312	2	537.321317	1072.62808	0.37727	0.00020272	2.0802	0.0011177	2.4575	0.0013204	537.3223708001896	43.855	0.31161	43.933	43.79	44.102	0.077515					16	11	2	0	0	0	0.075068	1	9673	9673		65.474	40.483	1	187920			56365	3820	32335	32336	68895	68895					0.09467192891088416
VYKILSTHL	9	Unmodified	_VYKILSTHL_					0	0	0		ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	ENSG00000134852|ENST00000513440|CLOCK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2908325195312	2	537.321317	1072.62808	0.50022	0.00026878	1.6907	0.00090847	2.191	0.0011772	537.3223981567601	43.836	0.3658	43.92	43.791	44.157	0.083996					16	13	2	0	0	0	0.090256	1	9646	9646		57.722	29.235	1	323330			56366	3820	32335	32336	68896	68896					0.09467192891088416
VYKKSIFVF	9	Unmodified	_VYKKSIFVF_					0	0	0		nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.8338012695312	2	565.83406	1129.65357	0.39278	0.00022225	-0.12415	-7.0251E-05	0.26862	0.00015199	565.834040502295	49.456	0.62492	49.456	49.218	49.843	0					48	22	3	0	0	0	0.015924	1	11393	11393		70.332	45.658	1	446870			56367	5941	32336	32337	68897	68897					0.09392667413499112
VYKKSIFVF	9	Unmodified	_VYKKSIFVF_					0	0	0		nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.7809448242188	2	565.83406	1129.65357	0.34625	0.00019592	-0.20099	-0.00011372	0.14527	8.2197E-05	565.8339545399602	49.517	0.53159	49.561	49.293	49.825	0.044891					48	19	3	0	0	0	0.25123	1	11481	11481		12.241	7.4846	1	447020			56368	5941	32336	32337	68898	68898					0.09392667413499112
VYKKSIFVF	9	Unmodified	_VYKKSIFVF_					0	0	0		nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.78076171875	2	565.83406	1129.65357	0.15519	8.7814E-05	0.07979	4.5148E-05	0.23498	0.00013296	565.8339909341806	49.391	0.62747	49.423	49.209	49.837	0.032043					52	22	3	0	0	0	0.24787	1	11472	11472		15.248	4.4246	1	532230			56369	5941	32336	32337	68899	68899					0.09392667413499112
VYKKYPNVF	9	Unmodified	_VYKKYPNVF_					0	0	0		ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000168710|O43865-2|AHCYL1	ENSG00000168710|ENST00000369799|AHCYL1	ENSG00000168710|ENST00000369799|AHCYL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.7861938476562	2	579.321317	1156.62808	0.37687	0.00021833	0.31731	0.00018382	0.69417	0.00040215	579.3216898784071	36.522	0.8968	36.522	36.142	37.039	0					57	31	3	0	0	0	0.09064	1	7438	7438		56.177	40.929	1	488650			56370	6295	32337	32338	68900	68900					0.056031928910670104
VYKKYPNVF	9	Unmodified	_VYKKYPNVF_					0	0	0		ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000168710|O43865-2|AHCYL1	ENSG00000168710|ENST00000369799|AHCYL1	ENSG00000168710|ENST00000369799|AHCYL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.7861938476562	2	579.321317	1156.62808	0.45884	0.00026582	0.17127	9.9221E-05	0.63012	0.00036504	579.3214890235434	36.366	0.85758	36.449	36.143	37.001	0.082359					54	30	3	0	0	0	0.14961	1	7404	7404		41.84	30.199	1	557610			56371	6295	32337	32338	68901	68901					0.056031928910670104
VYKKYPNVF	9	Unmodified	_VYKKYPNVF_					0	0	0		ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000168710|O43865-2|AHCYL1	ENSG00000168710|ENST00000369799|AHCYL1	ENSG00000168710|ENST00000369799|AHCYL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.7862548828125	2	579.321317	1156.62808	0.68364	0.00039605	0.0062517	3.6217E-06	0.68989	0.00039967	579.3214811722694	36.393	0.96876	36.479	36.085	37.053	0.08625					62	34	3	0	0	0	0.14961	1	7393	7393		41.84	30.199	1	370810			56372	6295	32337	32338	68902	68902					0.056031928910670104
VYKLDFLMF	9	Oxidation (M)	_VYKLDFLM(Oxidation (M))F_		VYKLDFLM(1)F		VYKLDFLM(50)F	0	0	1		nc|ENSG00000171310|Q9NPF2-2|CHST11;ENSG00000171310|ENST00000303694|CHST11	nc|ENSG00000171310|Q9NPF2-2|CHST11	nc|ENSG00000171310|Q9NPF2-2|CHST11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.31103515625	2	596.309561	1190.60457	0.69126	0.0004122	0.47534	0.00028345	1.1666	0.00069566	596.3099589583513	78.777	0.38138	78.836	78.657	79.039	0.058151					24	15	2	0	0	0	0.058995	1	20408	20408		49.554	29.101	1	129750			56373	6534	32338	32339	68903	68903		759			0.01689011062217105
VYKLDFLMF	9	Oxidation (M)	_VYKLDFLM(Oxidation (M))F_		VYKLDFLM(1)F		VYKLDFLM(48)F	0	0	1		nc|ENSG00000171310|Q9NPF2-2|CHST11;ENSG00000171310|ENST00000303694|CHST11	nc|ENSG00000171310|Q9NPF2-2|CHST11	nc|ENSG00000171310|Q9NPF2-2|CHST11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.8115234375	2	596.309561	1190.60457	0.72111	0.00043001	-0.12349	-7.3639E-05	0.59762	0.00035637	596.3093333012727	78.875	0.41212	78.845	78.715	79.127	-0.030426					27	17	2	0	0	0	0.064268	1	20433	20433		47.594	29.459	1	141050			56374	6534	32338	32339	68904	68904		759			0.01689011062217105
VYKLYHIF	8	Unmodified	_VYKLYHIF_					0	0	0			REV__ENST00000513226.1_1_4:17812700-17814869:+|nuORF	REV__ENST00000513226.1_1_4:17812700-17814869:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.3241577148438	2	541.805303	1081.59605	0.64105	0.00034732	-0.32346	-0.00017525	0.31758	0.00017207	541.8051717221127	43.492	0.94886	43.569	43.05	43.999	0.077518					45	34	2	0	0	0	0.33618	1	9588	9588		11.114	4.7604	1	404010	+		56375	14655	32339	32340	68905	68905					0.058518252079238664
VYKPMHDFL	9	Oxidation (M)	_VYKPM(Oxidation (M))HDFL_		VYKPM(1)HDFL		VYKPM(52)HDFL	0	0	1		ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.2891845703125	2	583.289159	1164.56377	0.57245	0.00033391	-1.3996	-0.00081638	-0.82715	-0.00048247	583.2884024791059	36.995	0.80685	36.995	36.562	37.369	0					71	28	3	0	0	0	0.05341	1	7580	7580		51.63	23.143	1	360690			56376	4798	32340	32341	68906	68906		599			-0.011933302573652327
VYKPMHDFL	9	Oxidation (M)	_VYKPM(Oxidation (M))HDFL_		VYKPM(1)HDFL		VYKPM(52)HDFL	0	0	1		ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.2899169921875	2	583.289159	1164.56377	0.38172	0.00022265	-1.0727	-0.00062569	-0.69098	-0.00040304	583.2884422012737	36.809	0.7841	36.896	36.491	37.275	0.08741					64	28	3	0	0	0	0.05341	2	7479	7479;7562		51.63	24.001	1	376220			56377	4798	32340	32341	68907;68908	68907		599			-0.011933302573652327
VYKPMHDFL	9	Oxidation (M)	_VYKPM(Oxidation (M))HDFL_		VYKPM(1)HDFL		VYKPM(56)HDFL	0	0	1		ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	ENSG00000148248|ENST00000371989|SURF4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.2882080078125	2	583.289159	1164.56377	0.66975	0.00039066	-1.4931	-0.00087092	-0.82337	-0.00048026	583.2882004779855	36.917	0.73759	37.01	36.51	37.248	0.093014					55	26	3	0	0	0	0.041175	2	7552	7476;7552		56.177	32.268	1	397770			56378	4798	32340	32341	68909;68910	68910		599			-0.011933302573652327
VYKPVSIYL	9	Unmodified	_VYKPVSIYL_					0	0	0		ENST00000367210.2_2_1:203771435-203771690:+|nuORF	ENST00000367210.2_2_1:203771435-203771690:+|nuORF	ENST00000367210.2_2_1:203771435-203771690:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7384033203125	2	541.318243	1080.62193	0.5974	0.00032338	-0.074006	-4.0061E-05	0.5234	0.00028332	541.3181246614023	57.023	0.55157	57.023	56.772	57.323	0					41	20	3	0	0	0	0.21538	1	13734	13734		26.268	7.0112	1	417040			56379	9728	32341	32342	68911	68911					0.08484674659553093
VYKPVSIYL	9	Unmodified	_VYKPVSIYL_					0	0	0		ENST00000367210.2_2_1:203771435-203771690:+|nuORF	ENST00000367210.2_2_1:203771435-203771690:+|nuORF	ENST00000367210.2_2_1:203771435-203771690:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7385864257812	2	541.318243	1080.62193	0.52289	0.00028305	-0.048057	-2.6014E-05	0.47483	0.00025703	541.3181697214632	56.888	0.47639	56.967	56.756	57.233	0.078674					35	17	3	0	0	0	0.19686	1	13672	13672		31.268	7.2478	1	423500			56380	9728	32341	32342	68912	68912					0.08484674659553093
VYKPVSIYL	9	Unmodified	_VYKPVSIYL_					0	0	0		ENST00000367210.2_2_1:203771435-203771690:+|nuORF	ENST00000367210.2_2_1:203771435-203771690:+|nuORF	ENST00000367210.2_2_1:203771435-203771690:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.738037109375	2	541.318243	1080.62193	0.58128	0.00031466	0.27817	0.00015058	0.85945	0.00046523	541.3183672778332	57.095	0.52354	57.076	56.838	57.362	-0.019081					37	18	3	0	0	0	0.20881	1	13721	13721		27.629	3.6082	1	383900			56381	9728	32341	32342	68913	68913					0.08484674659553093
VYKRRKSRT	9	Unmodified	_VYKRRKSRT_					0	0	0			REV__nc|ENSG00000184347|O75094-2|SLIT3	REV__nc|ENSG00000184347|O75094-2|SLIT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.8486328125	2	597.364913	1192.71527	0.50133	0.00029947	0.083517	4.989E-05	0.58484	0.00034936	597.3644133404565	91.578	0.38745	91.669	91.52	91.908	0.090668					33	27	2	0	0	0	0.26145	1	24385	24385		2.0598	0	1	233680	+		56382	18312	32342	32343	68914	68914					0.12662411885366964
VYKRRKSRT	9	Unmodified	_VYKRRKSRT_					0	0	0			REV__nc|ENSG00000184347|O75094-2|SLIT3	REV__nc|ENSG00000184347|O75094-2|SLIT3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	597.364913	1192.71527	0.45292	0.00027056	0.1731	0.0001034	0.62602	0.00037397	597.364536251759	91.663	0.16623	91.663	91.541	91.707	0	-0.0030719	7.5102E-05	NaN	0.52476	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104270	+		56383	18312	32342	32343							0.12662411885366964
VYKRYQMVI	9	Unmodified	_VYKRYQMVI_					0	0	0		ENSG00000107669|ENST00000224652|ATE1	ENSG00000107669|ENST00000224652|ATE1	ENSG00000107669|ENST00000224652|ATE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3348388671875	2	600.333901	1198.65325	0.71064	0.00042662	0.58222	0.00034953	1.2929	0.00077615	600.3340446435084	83.86	2.8022	83.937	83.243	86.045	0.077095					275	109	3	0	0	0	0.32733	1	21922	21922		4.756	0.81161	1	1104800			56384	2139	32343	32344	68915	68915					0.06186924422013362
VYKSEFIDL	9	Unmodified	_VYKSEFIDL_					0	0	0		nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2947387695312	2	557.294965	1112.57538	0.42034	0.00023425	-0.25567	-0.00014249	0.16466	9.1765E-05	557.2947432887148	57.371	0.49311	57.371	57.141	57.634	0					39	17	3	0	0	0	0.022205	1	13881	13881		63.227	28.826	1	856640			56385	3218	32344	32345	68916	68916					0.023591900376231933
VYKSEFIDL	9	Unmodified	_VYKSEFIDL_					0	0	0		nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	557.294965	1112.57538	0.11176	6.2282E-05	0.11077	6.1733E-05	0.22253	0.00012402	557.2949543667645	57.49	0.53872	57.473	57.229	57.767	-0.0172	0.050893	0.00025418	NaN	63.227	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	698760			56386	3218	32344	32345							0.023591900376231933
VYKTIMEQF	9	Oxidation (M)	_VYKTIM(Oxidation (M))EQF_		VYKTIM(1)EQF		VYKTIM(190)EQF	0	0	1		ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.794189453125	2	587.794275	1173.574	0.080189	4.7135E-05	-0.15147	-8.9033E-05	-0.071281	-4.1899E-05	587.7940896400868	42.543	0.45439	42.543	42.306	42.76	0					55	16	4	0	0	0	3.361E-11	3	9260	9260;9267;9317		192.32	108.89	1	1906800			56387	6888	32345	32346	68917;68918;68919	68917		779			-0.005847673228117856
VYKTIMEQF	9	Oxidation (M)	_VYKTIM(Oxidation (M))EQF_		VYKTIM(1)EQF		VYKTIM(150)EQF	0	0	1		ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.7945556640625	2	587.794275	1173.574	0.34832	0.00020474	0.00049912	2.9338E-07	0.34882	0.00020503	587.7942170366689	43.004	0.6284	43.004	42.76	43.388	0					74	22	4	0	0	0	8.9229E-05	1	9419	9419		151.48	68.051	1	2069600			56388	6888	32345	32346	68920	68920		779			-0.005847673228117856
VYKTIMEQF	9	Oxidation (M)	_VYKTIM(Oxidation (M))EQF_		VYKTIM(1)EQF		VYKTIM(190)EQF	0	0	1		ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.7941284179688	2	587.794275	1173.574	0.37304	0.00021927	-0.11268	-6.6231E-05	0.26036	0.00015304	587.7941411964567	42.207	0.79977	42.292	42.034	42.834	0.085197					62	28	4	0	0	0	3.361E-11	2	9145	9145;9190		192.32	99.155	1	2022400			56389	6888	32345	32346	68921;68922	68921		779			-0.005847673228117856
VYKTIMEQF	9	Oxidation (M)	_VYKTIM(Oxidation (M))EQF_		VYKTIM(1)EQF		VYKTIM(160)EQF	0	0	1		ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.7943725585938	2	587.794275	1173.574	0.16207	9.5266E-05	0.086966	5.1118E-05	0.24904	0.00014638	587.7942921425351	42.621	0.6729	42.707	42.462	43.135	0.085201					64	24	3	0	0	0	3.707E-06	1	9297	9297		163.69	94.582	1	1991500			56390	6888	32345	32346	68923	68923		779			-0.005847673228117856
VYKTIMEQF	9	Oxidation (M)	_VYKTIM(Oxidation (M))EQF_		VYKTIM(1)EQF		VYKTIM(190)EQF	0	0	1		ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.7943115234375	2	587.794275	1173.574	0.47853	0.00028128	-0.24313	-0.00014291	0.2354	0.00013837	587.7940700552156	42.166	0.43337	42.258	42.007	42.441	0.091362					51	14	4	0	0	0	3.361E-11	2	9124	9124;9179		192.32	99.155	1	2403300			56391	6888	32345	32346	68924;68925	68924		779			-0.005847673228117856
VYKTIMEQF	9	Oxidation (M)	_VYKTIM(Oxidation (M))EQF_		VYKTIM(1)EQF		VYKTIM(140)EQF	0	0	1		ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.7942504882812	2	587.794275	1173.574	0.24768	0.00014559	0.15834	9.3074E-05	0.40603	0.00023866	587.7942638308008	42.516	0.81126	42.608	42.413	43.224	0.091362					84	29	4	0	0	0	0.00047355	1	9285	9285		136.39	39.457	1	1982500			56392	6888	32345	32346	68926	68926		779			-0.005847673228117856
VYKTRKIA	8	Unmodified	_VYKTRKIA_					0	0	0			REV__nc|ENSG00000111846|Q8N0V5-3|GCNT2	REV__nc|ENSG00000111846|Q8N0V5-3|GCNT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.8086242675781	2	489.808377	977.6022	0.25481	0.00012481	0.52649	0.00025788	0.7813	0.00038269	489.80869878486504	57.158	0.57772	57.139	56.944	57.522	-0.019081					36	20	2	0	0	0	0.42758	1	13780	13780		13.508	0.97634	1	453540	+		56393	22947	32346	32347	68927	68927					0.1125034343946254
VYKVPPFTF	9	Unmodified	_VYKVPPFTF_					0	0	0		nc|ENSG00000177469|Q6NZI2-3|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3049926757812	2	549.305136	1096.59572	0.59769	0.00032832	-1.1037	-0.00060627	-0.50602	-0.00027796	549.3043386464244	66.004	3.6823	66.004	65.242	68.924	0					254	132	4	0	0	0	1.2283E-05	1	16481	16481		155.03	117.05	1	3473800			56394	6989	32347	32348	68928	68928					0.05128405488062526
VYKVPPFTF	9	Unmodified	_VYKVPPFTF_					0	0	0		nc|ENSG00000177469|Q6NZI2-3|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.30517578125	2	549.305136	1096.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.592	1	66.592	66.092	67.092	0								0	0	0	7.1522E-07	1	16676	16676		134.3	82.027	1				56395	6989	32347	32348	68929	68929					0.05128405488062526
VYKVPPFTF	9	Unmodified	_VYKVPPFTF_					0	0	0		nc|ENSG00000177469|Q6NZI2-3|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3052978515625	2	549.305136	1096.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.745	1	66.745	66.245	67.245	0								0	0	0	7.1522E-07	1	16723	16723		134.3	90.437	1				56396	6989	32347	32348	68930	68930					0.05128405488062526
VYKVPPFTF	9	Unmodified	_VYKVPPFTF_					0	0	0		nc|ENSG00000177469|Q6NZI2-3|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3049926757812	2	549.305136	1096.59572	0.55794	0.00030648	-0.60585	-0.00033279	-0.047904	-2.6314E-05	549.3048719655903	66.067	4.3595	66.151	65.238	69.597	0.083832					375	157	4	0	0	0	9.2305E-05	4	16618	16618;16627;16664;16716		142.08	104.11	1	2796900			56397	6989	32347	32348	68931;68932;68933;68934	68931					0.05128405488062526
VYKVPPFTF	9	Unmodified	_VYKVPPFTF_					0	0	0		nc|ENSG00000177469|Q6NZI2-3|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3049926757812	2	549.305136	1096.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.82	1	65.909	65.409	66.409	0.088882								0	0	0	7.1522E-07	1	16433	16433		134.3	86.547	1				56398	6989	32347	32348	68935	68935					0.05128405488062526
VYKVPPFTF	9	Unmodified	_VYKVPPFTF_					0	0	0		nc|ENSG00000177469|Q6NZI2-3|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3048706054688	2	549.305136	1096.59572	0.44073	0.0002421	-0.54401	-0.00029883	-0.10328	-5.6735E-05	549.3048987484334	66.197	4.298	66.184	65.225	69.523	-0.013596					355	153	4	0	0	0	0.00014042	4	16651	16651;16695;16743;16923		134.3	96.322	1	2910400			56399	6989	32347	32348	68936;68937;68938;68939	68936					0.05128405488062526
VYKVPPFTF	9	Unmodified	_VYKVPPFTF_					0	0	0		nc|ENSG00000177469|Q6NZI2-3|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;ENSG00000177469|ENST00000357037|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	nc|ENSG00000177469|Q6NZI2-3|CAVIN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3052978515625	2	549.305136	1096.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.751	1	65.74	65.24	66.24	-0.011337								0	0	0	7.1522E-07	1	16408	16408		134.3	90.437	1				56400	6989	32347	32348	68940	68940					0.05128405488062526
VYKVVGNLL	9	Unmodified	_VYKVVGNLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.8105163574219	2	502.810585	1003.60662	0.64797	0.00032581	-1.2757	-0.00064142	-0.6277	-0.00031561	502.8101211169955	54.704	0.49889	54.688	54.451	54.95	-0.015923					52	17	4	0	0	0	0.0033114	1	13009	13009		99.799	51.453	1	1003600			56401	7415	32348	32349	68941	68941					0.10495807862389483
VYKVVGNLL	9	Unmodified	_VYKVVGNLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	502.810585	1003.60662	0.67765	0.00034073	-0.84781	-0.00042629	-0.17016	-8.5558E-05	502.81013052176985	54.629	0.60004	54.629	54.374	54.974	0	-0.019175	8.6986E-05	NaN	99.799	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	827580			56402	7415	32348	32349							0.10495807862389483
VYKVVGNLL	9	Unmodified	_VYKVVGNLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	502.810585	1003.60662	0.61279	0.00030812	-0.83348	-0.00041908	-0.22069	-0.00011096	502.8100842139492	54.564	0.69292	54.627	54.327	55.02	0.063206	-0.020864	0.00010139	NaN	99.799	50	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	706620			56403	7415	32348	32349							0.10495807862389483
VYKYAQDFL	9	Unmodified	_VYKYAQDFL_					0	0	0		ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENSG00000163161|ENST00000285398|ERCC3	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.7400512695312	2	573.795132	1145.57571	0.60498	0.00034713	-2.3256	-0.0013344	-1.7206	-0.00098728	573.7936272619462	54.814	0.48112	54.814	54.462	54.943	0					24	17	2	0	0	0	0.23235	1	13003	13003		21.537	5.6898	1	214110			56404	5655	32349	32350	68942	68942					0.008746097574658052
VYKYAQDFL	9	Unmodified	_VYKYAQDFL_					0	0	0		ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENSG00000163161|ENST00000285398|ERCC3	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	573.795132	1145.57571	0.65741	0.00037722	-3.6643	-0.0021026	-3.0069	-0.0017253	573.7928702312918	54.793	0.43098	54.856	54.589	55.02	0.063202	0.020917	-0.00085643	NaN	21.537	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	423630			56405	5655	32349	32350							0.008746097574658052
VYKYPFELI	9	Unmodified	_VYKYPFELI_					0	0	0		SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant;SEC14L1|p.V620Efs*51|1|0.16|ENSG00000129657|chr17:77212192-77212193|-/TCTGAAAAAG|frameshift_variant;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000588696.5_1_17:75139678-75139750:+|nuORF	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3235473632812	2	586.323525	1170.6325	0.38323	0.00022469	-0.35681	-0.00020921	0.026413	1.5486E-05	586.3232912180565	71.337	1.0592	71.337	70.989	72.048	0					59	37	3	0	0	0	0.020233	2	18142	18091;18142		63.961	39.94	1	714670			56406	3434	32350	32351	68943;68944	68944					0.05400657313998636
VYKYPFELI	9	Unmodified	_VYKYPFELI_					0	0	0		SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant;SEC14L1|p.V620Efs*51|1|0.16|ENSG00000129657|chr17:77212192-77212193|-/TCTGAAAAAG|frameshift_variant;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000588696.5_1_17:75139678-75139750:+|nuORF	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3238525390625	2	586.323525	1170.6325	0.27318	0.00016017	-0.63353	-0.00037145	-0.36035	-0.00021128	586.3234029923882	71.275	0.80308	71.335	71.069	71.872	0.060783					52	28	4	0	0	0	0.020233	2	18084	18084;18143		63.961	38.561	1	835280			56407	3434	32350	32351	68945;68946	68945					0.05400657313998636
VYKYPFELI	9	Unmodified	_VYKYPFELI_					0	0	0		SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant;SEC14L1|p.V620Efs*51|1|0.16|ENSG00000129657|chr17:77212192-77212193|-/TCTGAAAAAG|frameshift_variant;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000588696.5_1_17:75139678-75139750:+|nuORF	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3232421875	2	586.323525	1170.6325	0.44987	0.00026377	-0.38228	-0.00022414	0.067596	3.9633E-05	586.3232553880014	71.396	1.0425	71.369	71.128	72.171	-0.027275					53	37	3	0	0	0	0.015924	2	18160	18107;18160		70.332	39.94	1	881160			56408	3434	32350	32351	68947;68948	68948					0.05400657313998636
VYLAAVNRL	9	Unmodified	_VYLAAVNRL_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.8060302734375	2	509.805834	1017.59712	0.67804	0.00034567	-0.11182	-5.7006E-05	0.56622	0.00028866	509.805702081204	50.434	0.65513	50.434	50.217	50.872	0					42	23	2	0	0	0	0.00268	2	11694	11694;11739		104.8	53.944	1	1143000			56409	307	32351	32352	68949;68950	68949					0.08902039576844345
VYLAAVNRL	9	Unmodified	_VYLAAVNRL_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.805908203125	2	509.805834	1017.59712	0.89941	0.00045852	-0.48787	-0.00024872	0.41153	0.0002098	509.80549721791544	50.42	0.82062	50.464	50.242	51.063	0.044891					50	29	2	0	0	0	0.00268	2	11689	11689;11739		104.8	53.944	1	1276100			56410	307	32351	32352	68951;68952	68951					0.08902039576844345
VYLAAVNRL	9	Unmodified	_VYLAAVNRL_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	509.80596923828125	2	509.805834	1017.59712	0.89831	0.00045796	-0.4159	-0.00021203	0.48241	0.00024593	509.80552868444585	50.47	1.1067	50.49	50.252	51.358	0.020695					59	41	2	0	0	0	0.00268	2	11689	11689;11732		104.8	53.944	1	1088900			56411	307	32351	32352	68953;68954	68953					0.08902039576844345
VYLAEKGEND	10	Unmodified	_VYLAEKGEND_					0	0	0		nc|ENSG00000075043|O43526-6|KCNQ2;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2	nc|ENSG00000075043|O43526-6|KCNQ2	nc|ENSG00000075043|O43526-6|KCNQ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.2752075195312	2	569.274761	1136.53497	0.20339	0.00011578	0.11882	6.7641E-05	0.3222	0.00018342	569.2755281402033	30.941	1.2019	30.969	30.693	31.895	0.027946					183	42	7	0	0	0	0.1715	2	5808	5808;5904		36.127	3.3413	1	19365000			56412	1035	32352	32353	68955;68956	68955					-0.027837763527941206
VYLAEKGEND	10	Unmodified	_VYLAEKGEND_					0	0	0		nc|ENSG00000075043|O43526-6|KCNQ2;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2	nc|ENSG00000075043|O43526-6|KCNQ2	nc|ENSG00000075043|O43526-6|KCNQ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.27587890625	2	569.274761	1136.53497	0.12749	7.2575E-05	0.19413	0.00011051	0.32162	0.00018309	569.275557730128	30.871	2.0445	30.898	30.638	32.683	0.027157					200	73	6	0	0	0	0.1715	3	5701	5701;5794;5914		36.127	2.1979	1	21975000			56413	1035	32352	32353	68957;68958;68959	68957					-0.027837763527941206
VYLAKLGNFF	10	Unmodified	_VYLAKLGNFF_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant;ENST00000559682.1_1_15:90969387-90972913:+|nuORF;ENST00000560418.1_2_15:90931626-90974461:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3295288085938	2	586.329142	1170.64373	0.44025	0.00025813	-0.067482	-3.9567E-05	0.37277	0.00021857	586.3291304077162	72.904	0.58464	72.904	72.667	73.251	0					44	20	3	0	0	0	0.0023361	2	18643	18594;18643		107.19	67.23	1	577820			56414	4321	32353	32354	68960;68961	68961					0.06523479408133426
VYLAKLGNFF	10	Unmodified	_VYLAKLGNFF_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant;ENST00000559682.1_1_15:90969387-90972913:+|nuORF;ENST00000560418.1_2_15:90931626-90974461:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3287353515625	2	586.329142	1170.64373	0.27711	0.00016248	0.11355	6.6576E-05	0.39065	0.00022905	586.3291785301825	72.862	0.60019	72.916	72.655	73.255	0.053833					52	21	4	0	0	0	0.0036033	2	18614	18568;18614		99.799	72.09	1	584620			56415	4321	32353	32354	68962;68963	68963					0.06523479408133426
VYLAKLGNFF	10	Unmodified	_VYLAKLGNFF_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant;ENST00000559682.1_1_15:90969387-90972913:+|nuORF;ENST00000560418.1_2_15:90931626-90974461:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3296508789062	2	586.329142	1170.64373	0.49807	0.00029204	0.11412	6.691E-05	0.61219	0.00035894	586.3290962431928	72.934	0.68912	72.905	72.71	73.399	-0.029305					54	24	3	0	0	0	0.0042359	2	18592	18592;18642		96.111	70.712	1	629140			56416	4321	32353	32354	68964;68965	68964					0.06523479408133426
VYLATLHEN	9	Unmodified	_VYLATLHEN_					0	0	0		nc|ENSG00000178904|Q6ZPD9-2|DPY19L3;ENSG00000178904|ENST00000392250|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2957763671875	2	530.277106	1058.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.52	1	100.52	100.02	101.02	0								0	0	0	0.2362	1	26856	26856		10.824	3.5347	1				56417	7082	32354	32355	68966	68966					0.012731525806202626
VYLATLHEN	9	Unmodified	_VYLATLHEN_					0	0	0		nc|ENSG00000178904|Q6ZPD9-2|DPY19L3;ENSG00000178904|ENST00000392250|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2953491210938	2	530.277106	1058.53966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.66	1	100.66	100.16	101.16	0								0	0	0	0.2362	1	26884	26884		10.824	1.4408	1				56418	7082	32354	32355	68967	68967					0.012731525806202626
VYLDFSVCFI	10	Unmodified	_VYLDFSVCFI_					0	0	0		ENST00000484162.5_1_1:70697315-70697588:+|nuORF	ENST00000484162.5_1_1:70697315-70697588:+|nuORF	ENST00000484162.5_1_1:70697315-70697588:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3006591796875	2	603.299193	1204.58383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.146	1	83.22	82.72	83.72	0.073097								0	0	0	0.37044	1	21731	21731		6.2058	0.47393	1				56419	11071	32355	32356	68968	68968					-0.0102757931740598
VYLDFSVCFI	10	Unmodified	_VYLDFSVCFI_					0	0	0		ENST00000484162.5_1_1:70697315-70697588:+|nuORF	ENST00000484162.5_1_1:70697315-70697588:+|nuORF	ENST00000484162.5_1_1:70697315-70697588:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.3012084960938	2	603.299193	1204.58383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.358	1	96.354	95.854	96.854	-0.0038147								0	0	0	0.35948	1	25767	25767		10.824	4.1008	1				56420	11071	32355	32356	68969	68969					-0.0102757931740598
VYLDGIVRI	9	Unmodified	_VYLDGIVRI_					0	0	0		ENST00000563918.5_1_16:67210716-67213197:-|nuORF;nc|ENSG00000196123|Q68EN5-3|MATCAP1;ENST00000561679.5_1_16:67210716-67212831:-|nuORF;ENSG00000196123|ENST00000563902|MATCAP1	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3138427734375	2	524.313492	1046.61243	0.67448	0.00035364	-0.012818	-6.7205E-06	0.66166	0.00034692	524.3134746349974	65.77	0.67947	65.859	65.434	66.113	0.088882					42	24	2	0	0	0	0.0051609	1	16451	16451		103.35	61.514	1	1284300			56421	11938	32356	32357	68970	68970					0.09098906374060789
VYLDGIVRI	9	Unmodified	_VYLDGIVRI_					0	0	0		ENST00000563918.5_1_16:67210716-67213197:-|nuORF;nc|ENSG00000196123|Q68EN5-3|MATCAP1;ENST00000561679.5_1_16:67210716-67212831:-|nuORF;ENSG00000196123|ENST00000563902|MATCAP1	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	ENST00000563918.5_1_16:67210716-67213197:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.313492	1046.61243	0.62195	0.0003261	0.26123	0.00013697	0.88318	0.00046306	524.3136101136389	65.89	0.63908	65.879	65.504	66.143	-0.01133	0.010085	0.0001139	NaN	92.653	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1075100			56422	11938	32356	32357							0.09098906374060789
VYLDHAGATLF	11	Unmodified	_VYLDHAGATLF_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.8114624023438	2	603.811313	1205.60807	0.54814	0.00033097	-0.071993	-4.347E-05	0.47615	0.0002875	603.811291910916	60.446	1.3589	60.446	59.977	61.335	0					151	49	5	0	0	0	7.0275E-07	4	14821	14726;14771;14821;14866		133.05	94.877	1	16834000			56423	1051	32357	32358	68971;68972;68973;68974	68973					0.013493971604702892
VYLDHAGATLF	11	Unmodified	_VYLDHAGATLF_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.8113403320312	2	603.811313	1205.60807	0.43128	0.00026041	-0.048696	-2.9403E-05	0.38259	0.00023101	603.8112996398671	60.338	2.8025	60.433	59.961	62.764	0.095093					185	102	4	0	0	0	1.6223E-12	4	14746	14700;14746;14796;14841		157.8	115.96	1	18267000			56424	1051	32357	32358	68975;68976;68977;68978	68976					0.013493971604702892
VYLDHAGATLF	11	Unmodified	_VYLDHAGATLF_					0	0	0		ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	ENSG00000075643|ENST00000261326|MOCOS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.8114013671875	2	603.811313	1205.60807	0.47863	0.000289	-0.017664	-1.0666E-05	0.46096	0.00027833	603.8113334101097	60.426	2.6753	60.414	59.997	62.672	-0.011486					187	98	5	0	0	0	8.8925E-09	4	14772	14726;14772;14815;14868		145.13	110.73	1	17543000			56425	1051	32357	32358	68979;68980;68981;68982	68980					0.013493971604702892
VYLDKFIRL	9	Unmodified	_VYLDKFIRL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.8502807617188	2	583.850242	1165.68593	0.18671	0.00010901	0.10599	6.1882E-05	0.2927	0.00017089	583.8502254336536	61.677	1.305	61.677	61.413	62.718	0					121	48	4	0	0	0	0.00051734	3	15175	15126;15175;15225		128.93	76.664	1	2566000			56426	3450	32358	32359	68983;68984;68985	68984					0.1097145481651296
VYLDKFIRL	9	Unmodified	_VYLDKFIRL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.8504638671875	2	583.850242	1165.68593	0.0030062	1.7552E-06	0.31487	0.00018384	0.31788	0.00018559	583.8503067535365	61.665	1.1973	61.656	61.4	62.597	-0.0085526					106	43	4	0	0	0	0.00051734	3	15148	15103;15148;15194		128.93	76.664	1	2903100			56427	3450	32358	32359	68986;68987;68988	68987					0.1097145481651296
VYLDKFIRL	9	Unmodified	_VYLDKFIRL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	583.850242	1165.68593	-0.113	-6.5974E-05	0.38846	0.0002268	0.27547	0.00016083	583.8503730102008	61.559	1.1641	61.656	61.408	62.572	0.096985	-0.0069867	0.00012729	NaN	128.93	113	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2947800			56428	3450	32358	32359							0.1097145481651296
VYLEGIQSF	9	Unmodified	_VYLEGIQSF_					0	0	0			REV__ENSG00000184117|ENST00000216121|NIPSNAP1	REV__ENSG00000184117|ENST00000216121|NIPSNAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.813720703125	2	528.274032	1054.53351	0.55513	0.00029326	0.43238	0.00022841	0.9875	0.00052167	528.7755757369092	70.518	0.36471	70.493	70.301	70.666	-0.024872					18	12	2	0	0	0	0.22674	1	17871	17871		22.736	4.6013	1	182420	+		56429	18302	32359	32360	68989	68989					0.008426343491009902
VYLEKFMTF	9	Oxidation (M)	_VYLEKFM(Oxidation (M))TF_		VYLEKFM(1)TF		VYLEKFM(97)TF	0	0	1		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.299560546875	2	597.299193	1192.58383	0.34838	0.00020808	0.59099	0.000353	0.93936	0.00056108	597.2989646156556	59.406	0.62161	59.406	59.107	59.728	0					59	21	5	0	0	0	0.003673	2	14455	14455;14465		96.936	56.986	1	943110			56430	1732	32360	32361	68990;68991	68990		212			-0.004755793174126666
VYLEKFMTF	9	Oxidation (M)	_VYLEKFM(Oxidation (M))TF_		VYLEKFM(1)TF		VYLEKFM(100)TF	0	0	1		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.2998046875	2	597.299193	1192.58383	0.46069	0.00027517	0.21349	0.00012751	0.67418	0.00040269	597.2989516166422	59.241	0.66581	59.332	59.101	59.767	0.091305					55	23	4	0	0	0	0.0028032	1	14403	14403		103.82	65.672	1	790910			56431	1732	32360	32361	68992	68992		212			-0.004755793174126666
VYLELPAAAK	10	Unmodified	_VYLELPAAAK_					0	0	0		nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	nc|ENSG00000189056|P78509-3|RELN	nc|ENSG00000189056|P78509-3|RELN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2947387695312	2	537.813325	1073.6121	-0.30288	-0.00016289	1.2224	0.00065745	0.91957	0.00049456	538.3156247287868	60.136	0.32649	60.231	59.99	60.317	0.095089					18	11	2	0	0	0	0.29589	1	14689	14689		22.736	7.898	1	366370			56432	7797	32361	32362	68993	68993					0.07823486654183398
VYLEPKEL	8	Unmodified	_VYLEPKEL_					0	0	0			REV__nc|ENSG00000130270|O60423-3|ATP8B3	REV__nc|ENSG00000130270|O60423-3|ATP8B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.77911376953125	2	495.778951	989.543348	0.80959	0.00040138	-0.12771	-6.3314E-05	0.68189	0.00033807	495.77869131891237	78.267	1.2413	78.267	77.878	79.119	0					118	48	4	0	0	0	0.41758	1	20423	20423		16.942	1.0951	1	1561700	+		56433	15445	32362	32363	68994	68994					0.04815822354487409
VYLEQEERF	9	Unmodified	_VYLEQEERF_					0	0	0		nc|ENSG00000138764|Q16589-2|CCNG2;ENSG00000138764|ENST00000316355|CCNG2;ENST00000497512.5_1_4:78078410-78106259:+|nuORF	nc|ENSG00000138764|Q16589-2|CCNG2	nc|ENSG00000138764|Q16589-2|CCNG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.2861328125	2	606.798403	1211.58225	0.45643	0.00027696	0.59776	0.00036272	1.0542	0.00063968	606.7990881087243	46.103	0.19075	46.103	46.003	46.194	0					10	6	2	0	0	0	0.07848	1	10357	10357		42.312	17.639	1	166700			56434	4190	32363	32364	68995	68995					-0.015074970818204747
VYLEQEERF	9	Unmodified	_VYLEQEERF_					0	0	0		nc|ENSG00000138764|Q16589-2|CCNG2;ENSG00000138764|ENST00000316355|CCNG2;ENST00000497512.5_1_4:78078410-78106259:+|nuORF	nc|ENSG00000138764|Q16589-2|CCNG2	nc|ENSG00000138764|Q16589-2|CCNG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.286376953125	2	606.798403	1211.58225	0.53461	0.0003244	-0.14169	-8.5978E-05	0.39292	0.00023842	606.798504351446	45.746	0.3292	45.811	45.647	45.976	0.065048					24	11	3	0	0	0	0.022205	1	10252	10252		63.227	30.442	1	207350			56435	4190	32363	32364	68996	68996					-0.015074970818204747
VYLFTPKNF	9	Unmodified	_VYLFTPKNF_					0	0	0		ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7;nc|ENSG00000196116|Q8NHU6-3|TDRD7	ENSG00000196116|ENST00000355295|TDRD7	ENSG00000196116|ENST00000355295|TDRD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.3208618164062	2	564.808042	1127.60153	0.28758	0.00016243	-0.82381	-0.0004653	-0.53623	-0.00030287	564.8074984585631	62.246	0.45027	62.237	62.04	62.49	-0.0085526					18	16	2	0	0	0	0.23235	1	15313	15313		21.537	5.6898	1	117070			56436	7822	32364	32365	68997	68997					0.042835039997498825
VYLGHVIYL	9	Unmodified	_VYLGHVIYL_					0	0	0		ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.810791015625	2	538.810585	1075.60662	0.58837	0.00031702	-0.45835	-0.00024696	0.13002	7.0056E-05	538.8103058780252	64.426	1.1298	64.519	64.09	65.22	0.09288					85	41	3	0	0	0	0.0040737	1	16024	16024		93.763	62.494	1	1728800			56437	7683	32365	32366	68998	68998					0.07183807862361391
VYLGHVIYL	9	Unmodified	_VYLGHVIYL_					0	0	0		ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	538.810585	1075.60662	0.68808	0.00037075	-0.59339	-0.00031973	0.094693	5.1022E-05	538.8102534560649	64.497	0.94594	64.497	64.13	65.076	0	-0.0069595	-9.044E-05	NaN	93.763	73	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1855900			56438	7683	32365	32366							0.07183807862361391
VYLGHVIYL	9	Unmodified	_VYLGHVIYL_					0	0	0		ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	538.810585	1075.60662	0.66893	0.00036043	-0.49245	-0.00026534	0.17648	9.5089E-05	538.810275396741	64.506	1.1882	64.497	64.101	65.29	-0.0095291	-0.0077835	1.8333E-05	NaN	93.763	87	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1743000			56439	7683	32365	32366							0.07183807862361391
VYLHDFQRF	9	Unmodified	_VYLHDFQRF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;ENST00000569929.5_1_16:81888133-81917132:+|nuORF	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2113952636719	3	408.876857	1223.60874	0.21371	8.738E-05	0.17459	7.1387E-05	0.3883	0.00015877	408.8768260294054	47.308	0.77016	47.308	47.053	47.823	0					69	27	3	0	0	0	0.058995	3	10724	10724;10775;10882		39.213	24.256	1	1441200			56440	8016	32366	32367	68999;69000;69001	68999					0.005882366001742412
VYLHDFQRF	9	Unmodified	_VYLHDFQRF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;ENST00000569929.5_1_16:81888133-81917132:+|nuORF	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.8771057128906	3	408.876857	1223.60874	0.029593	1.21E-05	0.44257	0.00018096	0.47216	0.00019306	408.8769137353396	47.161	0.79279	47.214	46.984	47.777	0.052574					74	29	4	0	0	0	0.03069	3	10681	10681;10730;10769		55.235	41.62	1	1306000			56441	8016	32366	32367	69002;69003;69004	69002					0.005882366001742412
VYLHDFQRF	9	Unmodified	_VYLHDFQRF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;ENST00000569929.5_1_16:81888133-81917132:+|nuORF	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.8768005371094	3	408.876857	1223.60874	0.6599	0.00026982	-0.37335	-0.00015265	0.28655	0.00011717	408.8766002447772	47.242	0.79705	47.297	47.064	47.861	0.054371					76	29	4	0	0	0	0.037019	3	10673	10673;10720;10757		46.022	36.478	1	1710800			56442	8016	32366	32367	69005;69006;69007	69005					0.005882366001742412
VYLHLNLV	8	Unmodified	_VYLHLNLV_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L;nc|ENSG00000135801|O75529-2|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80023193359375	2	485.789653	969.564752	0.42748	0.00020766	0.0066018	3.2071E-06	0.43408	0.00021087	485.78966889194703	86.523	0.40177	86.523	86.326	86.728	0					36	16	3	0	0	0	0.4419	1	22787	22787		8.5933	0	1	106000			56443	3906	32367	32368	69008	69008					0.07875252173835179
VYLHLNLV	8	Unmodified	_VYLHLNLV_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L;nc|ENSG00000135801|O75529-2|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.80035400390625	2	485.789653	969.564752	0.32492	0.00015784	0.25242	0.00012262	0.57734	0.00028046	485.789693134908	86.453	0.39339	86.537	86.286	86.679	0.084251					26	15	2	0	0	0	0.4419	1	22719	22719		8.5933	0	1	91271			56444	3906	32367	32368	69009	69009					0.07875252173835179
VYLHLNLV	8	Unmodified	_VYLHLNLV_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L;nc|ENSG00000135801|O75529-2|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	485.789653	969.564752	0.32492	0.00015784	0.25242	0.00012262	0.57734	0.00028046	485.789693134908	86.453	0.39339	86.537	86.286	86.679	0.084251	0.0040066	0.00010817	NaN	8.5933	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91271			56445	3906	32367	32368							0.07875252173835179
VYLHLNLV	8	Unmodified	_VYLHLNLV_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L;nc|ENSG00000135801|O75529-2|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	485.789653	969.564752	0.44873	0.00021799	0.2246	0.00010911	0.67334	0.0003271	485.78960267367813	86.548	0.43124	86.539	86.339	86.77	-0.0090027	0.0062598	8.1145E-05	NaN	8.5933	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105390			56446	3906	32367	32368							0.07875252173835179
VYLIARAVK	9	Unmodified	_VYLIARAVK_					0	0	0			REV__ENST00000540970.1_1_1:110581774-110582138:+|nuORF	REV__ENST00000540970.1_1_1:110581774-110582138:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2567138671875	2	516.831852	1031.64915	0.65704	0.00033958	-0.22817	-0.00011793	0.42887	0.00022165	516.8316994548825	47.218	0.75339	47.218	46.992	47.745	0					49	26	3	0	0	0	0.23147	1	10668	10668		19.439	3.6708	1	543750	+		56447	16148	32368	32369	69010	69010					0.13459202990588892
VYLIARAVK	9	Unmodified	_VYLIARAVK_					0	0	0			REV__ENST00000540970.1_1_1:110581774-110582138:+|nuORF	REV__ENST00000540970.1_1_1:110581774-110582138:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.25634765625	2	516.831852	1031.64915	0.88616	0.00045799	-0.50134	-0.00025911	0.38481	0.00019888	516.8316287131078	47.222	0.69564	47.276	47.006	47.702	0.054371					54	25	3	0	0	0	0.23147	1	10622	10622		13.508	3.3245	1	621700	+		56448	16148	32368	32369	69011	69011					0.13459202990588892
VYLIARAVK	9	Unmodified	_VYLIARAVK_					0	0	0			REV__ENST00000540970.1_1_1:110581774-110582138:+|nuORF	REV__ENST00000540970.1_1_1:110581774-110582138:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	516.831852	1031.64915	0.24923	0.00012881	0.2165	0.0001119	0.46573	0.00024071	516.8319601358237	47.143	0.58588	47.195	47.014	47.599	0.052574	-0.034337	0.00054894	NaN	19.439	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	603520	+		56449	16148	32368	32369							0.13459202990588892
VYLICICLVY	10	Unmodified	_VYLICICLVY_					0	0	0			REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF	REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.3036499023438	2	601.321614	1200.62867	0.71897	0.00043233	-0.020838	-1.2531E-05	0.69813	0.0004198	601.3214513387896	84.388	2.3317	84.465	83.302	85.634	0.077095					143	92	2	0	0	0	0.31745	1	22032	22032		7.9102	0	1	250580	+		56450	20742	32369	32370	69012	69012					0.03638528224246329
VYLICICLVY	10	Unmodified	_VYLICICLVY_					0	0	0			REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF	REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.7982788085938	2	601.321614	1200.62867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.225	1	90.225	89.725	90.725	0.0003891								0	0	0	0.3749	1	23894	23894		4.3292	0	1		+		56451	20742	32369	32370	69013	69013					0.03638528224246329
VYLICICLVY	10	Unmodified	_VYLICICLVY_					0	0	0			REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF	REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	601.321614	1200.62867	0.71126	0.0004277	0.20035	0.00012048	0.91161	0.00054817	601.3216174652698	84.437	1.2769	84.437	84.033	85.31	0	-0.014028	0.00016994	NaN	7.9102	77	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365670	+		56452	20742	32369	32370							0.03638528224246329
VYLIEHPSL	9	Unmodified	_VYLIEHPSL_					0	0	0		ENSG00000108381|ENST00000263080|ASPA	ENSG00000108381|ENST00000263080|ASPA	ENSG00000108381|ENST00000263080|ASPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.3056030273438	2	535.797675	1069.5808	1.0752	0.0005761	-1.6785	-0.00089932	-0.60326	-0.00032322	535.7970887489022	55.922	0.41568	55.922	55.658	56.074	0					34	14	3	0	0	0	0.090484	1	13311	13311		54.774	28.505	1	698030			56453	2180	32370	32371	69014	69014					0.04878913620086678
VYLIEHPSL	9	Unmodified	_VYLIEHPSL_					0	0	0		ENSG00000108381|ENST00000263080|ASPA	ENSG00000108381|ENST00000263080|ASPA	ENSG00000108381|ENST00000263080|ASPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7982177734375	2	535.797675	1069.5808	0.58953	0.00031587	-0.0531	-2.8451E-05	0.53643	0.00028742	535.7977786891421	55.215	0.94618	55.215	54.736	55.682	0					104	34	5	0	0	0	4.8547E-06	1	13186	13186		147.83	96.976	1	4671000			56454	2180	32370	32371	69015	69015					0.04878913620086678
VYLIEHPSL	9	Unmodified	_VYLIEHPSL_					0	0	0		ENSG00000108381|ENST00000263080|ASPA	ENSG00000108381|ENST00000263080|ASPA	ENSG00000108381|ENST00000263080|ASPA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7979125976562	2	535.797675	1069.5808	0.59096	0.00031664	-0.21075	-0.00011292	0.38021	0.00020371	535.7978309319069	55.131	1.0007	55.202	54.702	55.703	0.070885					108	36	4	0	0	0	0.0011817	1	13211	13211		120.45	80.493	1	4909700			56455	2180	32370	32371	69016	69016					0.04878913620086678
VYLIEHPSL	9	Unmodified	_VYLIEHPSL_					0	0	0		ENSG00000108381|ENST00000263080|ASPA	ENSG00000108381|ENST00000263080|ASPA	ENSG00000108381|ENST00000263080|ASPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.3058471679688	2	535.797675	1069.5808	0.73667	0.00039471	-0.98062	-0.00052541	-0.24394	-0.0001307	535.7971920604414	55.907	0.5461	55.978	55.592	56.138	0.070885					38	19	3	0	0	0	0.012082	1	13267	13267		74.929	47.3	1	1311300			56456	2180	32370	32371	69017	69017					0.04878913620086678
VYLIEHPSL	9	Unmodified	_VYLIEHPSL_					0	0	0		ENSG00000108381|ENST00000263080|ASPA	ENSG00000108381|ENST00000263080|ASPA	ENSG00000108381|ENST00000263080|ASPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.798583984375	2	535.797675	1069.5808	0.59368	0.00031809	0.090956	4.8734E-05	0.68463	0.00036682	535.7978932664519	55.325	0.90544	55.305	54.818	55.723	-0.019081					96	33	4	0	0	0	3.4341E-06	1	13182	13182		141.83	90.972	1	5275300			56457	2180	32370	32371	69018	69018					0.04878913620086678
VYLIEHPSL	9	Unmodified	_VYLIEHPSL_					0	0	0		ENSG00000108381|ENST00000263080|ASPA	ENSG00000108381|ENST00000263080|ASPA	ENSG00000108381|ENST00000263080|ASPA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	535.797675	1069.5808	0.93962	0.00050344	-1.3736	-0.00073598	-0.434	-0.00023254	535.7969373434937	55.964	0.57101	55.945	55.696	56.267	-0.019077	-0.0032257	-0.00020535	NaN	65.235	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	937980			56458	2180	32370	32371							0.04878913620086678
VYLISSLVT	9	Unmodified	_VYLISSLVT_					0	0	0			REV__ENST00000421367.6_1_10:101911593-101911725:-|nuORF	REV__ENST00000421367.6_1_10:101911593-101911725:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7961730957031	2	497.794601	993.574648	0.4954	0.00024661	1.8494	0.00092061	2.3448	0.0011672	497.7948971957941	43.233	1.3294	43.31	42.772	44.102	0.077515					129	48	5	0	0	0	0.26879	1	9497	9497		13.508	4.1604	1	903140	+		56459	20866	32371	32372	69019	69019					0.07760395388584129
VYLISSLVT	9	Unmodified	_VYLISSLVT_					0	0	0			REV__ENST00000421367.6_1_10:101911593-101911725:-|nuORF	REV__ENST00000421367.6_1_10:101911593-101911725:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.796142578125	2	497.794601	993.574648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.273	1	43.357	42.857	43.857	0.083996								0	0	0	0.22789	1	9480	9480		13.508	2.684	1		+		56460	20866	32371	32372	69020	69020					0.07760395388584129
VYLISSLVT	9	Unmodified	_VYLISSLVT_					0	0	0			REV__ENST00000421367.6_1_10:101911593-101911725:-|nuORF	REV__ENST00000421367.6_1_10:101911593-101911725:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7961730957031	2	497.794601	993.574648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.306	1	43.39	42.89	43.89	0.083996								0	0	0	0.22789	1	9490	9490		13.508	2.684	1		+		56461	20866	32371	32372	69021	69021					0.07760395388584129
VYLISTGTHPD	11	Unmodified	_VYLISTGTHPD_					0	0	0			REV__ENSG00000198265|ENST00000358691|HELZ	REV__ENSG00000198265|ENST00000358691|HELZ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.7901000976562	2	601.806228	1201.5979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.131	1	85.131	84.631	85.631	0								0	0	0	0.35922	1	22348	22348		6.2058	0	1		+		56462	18813	32372	32373	69022	69022					0.005167894352325675
VYLKLACLL	9	Unmodified	_VYLKLACLL_					0	0	0			REV__ENSG00000177938|ENST00000317658|CAPZA3	REV__ENSG00000177938|ENST00000317658|CAPZA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3173217773438	2	518.317189	1034.61982	0.49679	0.00025749	-0.051654	-2.6773E-05	0.44513	0.00023072	518.3170881604384	76.271	4.1828	76.239	74.838	79.021	-0.031479					502	157	4	0	0	0	0.29662	3	19744	19701;19744;19790		9.3474	0	1	7331400	+		56463	18007	32373	32374	69023;69024;69025	69024					0.10389922650097105
VYLKLACLL	9	Unmodified	_VYLKLACLL_					0	0	0			REV__ENSG00000177938|ENST00000317658|CAPZA3	REV__ENSG00000177938|ENST00000317658|CAPZA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3172607421875	2	518.317189	1034.61982	0.44447	0.00023038	-0.18415	-9.5449E-05	0.26032	0.00013493	518.316914650911	79.414	1.7472	79.385	78.954	80.701	-0.028923					159	66	4	0	0	0	0.34374	1	20563	20563		2.3027	0	1	1027000	+		56464	18007	32373	32374	69026	69026					0.10389922650097105
VYLLCLALF	9	Unmodified	_VYLLCLALF_					0	0	0		ENST00000448842.1_1_2:204536900-204537104:-|nuORF	ENST00000448842.1_1_2:204536900-204537104:-|nuORF	ENST00000448842.1_1_2:204536900-204537104:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3026733398438	2	527.803914	1053.59328	0.70974	0.00037461	-0.018088	-9.5469E-06	0.69166	0.00036506	527.8039521217895	84.577	1.083	84.564	84.267	85.35	-0.01284					56	43	2	0	0	0	0.24542	1	22171	22171		14.582	0	1	442980			56465	10623	32374	32375	69027	69027					0.06862233758738512
VYLLEKKAL	9	Unmodified	_VYLLEKKAL_					0	0	0			REV__nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	REV__nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2949829101562	2	538.839342	1075.66413	0.57577	0.00031025	0.11056	5.9577E-05	0.68633	0.00036982	538.8392186025294	62.304	0.6375	62.296	62.067	62.705	-0.0085564					36	23	2	0	0	0	0.24739	1	15458	15458		13.508	13.508	1	332880	+		56466	16889	32375	32376	69028	69028					0.12932650067932627
VYLLHVVQ	8	Unmodified	_VYLLHVVQ_					0	0	0			REV__ENST00000607058.1_1_8:24771141-24771990:-|nuORF	REV__ENST00000607058.1_1_8:24771141-24771990:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	485.8002014160156	2	485.789653	969.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.409	1	54.394	53.894	54.894	-0.015923								0	0	0	0.34752	1	12913	12913		15.768	2.2603	1		+		56467	22664	32376	32377	69029	69029					0.07875252173846548
VYLLLPPVL	9	Unmodified	_VYLLLPPVL_					0	0	0		ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8334350585938	2	513.833529	1025.6525	0.23298	0.00011971	0.63738	0.00032751	0.87036	0.00044722	513.833406258606	96.729	0.53477	96.723	96.555	97.089	-0.0055466					72	52	2	0	0	0	0.34374	1	25882	25882		2.3027	0	1	120410			56468	8753	32377	32378	69030	69030					0.14070453044610076
VYLLLPPVL	9	Unmodified	_VYLLLPPVL_					0	0	0		ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.833529	1025.6525	0.039533	2.0313E-05	0.32719	0.00016812	0.36673	0.00018844	513.8333855563375	96.795	0.47174	96.795	96.578	97.05	0	0.026879	-0.00024448	NaN	2.3027	80	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86468			56469	8753	32377	32378							0.14070453044610076
VYLLLPPVL	9	Unmodified	_VYLLLPPVL_					0	0	0		ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	513.833529	1025.6525	0.10537	5.4144E-05	0.71442	0.00036709	0.81979	0.00042124	513.8334345185121	96.717	0.49119	96.787	96.531	97.022	0.070465	0.018762	0.00015347	NaN	2.3027	83	46	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83584			56470	8753	32377	32378							0.14070453044610076
VYLLLPPVL	9	Unmodified	_VYLLLPPVL_					0	0	0		ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	513.833529	1025.6525	0.23298	0.00011971	0.63738	0.00032751	0.87036	0.00044722	513.833406258606	96.729	0.53477	96.723	96.555	97.089	-0.0055466	-0.04564	7.4292E-05	NaN	2.3027	72	52	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120410			56471	8753	32377	32378							0.14070453044610076
VYLLNSTTL	9	Unmodified	_VYLLNSTTL_					0	0	0		nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2897338867188	2	512.289682	1022.56481	0.35687	0.00018282	-0.14221	-7.2853E-05	0.21466	0.00010997	512.2895996650971	68.454	1.3546	68.454	68.101	69.455	0					107	49	4	0	0	0	1.0663E-16	3	17219	17219;17329;17409		214.41	136.26	1	1980300			56472	12643	32378	32379	69031;69032;69033	69031					0.05443207383189019
VYLLNSTTL	9	Unmodified	_VYLLNSTTL_					0	0	0		nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2894897460938	2	512.289682	1022.56481	0.19083	9.7759E-05	-0.11824	-6.0576E-05	0.072583	3.7183E-05	512.2895949529706	68.377	1.1307	68.449	68.187	69.318	0.071938					106	41	4	0	0	0	9.4362E-24	2	17235	17191;17235		231.69	160.56	1	2027400			56473	12643	32378	32379	69034;69035	69035					0.05443207383189019
VYLLNSTTL	9	Unmodified	_VYLLNSTTL_					0	0	0		nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	nc|ENSG00000109572|P51790-2|CLCN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.28955078125	2	512.289682	1022.56481	0.29511	0.00015118	-0.056569	-2.898E-05	0.23854	0.0001222	512.2896243563804	68.466	1.179	68.447	68.148	69.327	-0.019157					87	41	3	0	0	0	1.0663E-16	2	17268	17214;17268		214.41	130.17	1	1959700			56474	12643	32378	32379	69036;69037	69037					0.05443207383189019
VYLLRVDPAL	10	Unmodified	_VYLLRVDPAL_					0	0	0			REV__nc|ENSG00000095539|Q9NTN9|SEMA4G	REV__nc|ENSG00000095539|Q9NTN9|SEMA4G	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.2991333007812	2	579.847699	1157.68084	-0.56135	-0.0003255	-2.5957	-0.0015051	-3.1571	-0.0018306	579.8461136132004	34.404	0.33109	34.478	34.272	34.603	0.074421					18	11	2	0	0	0	0.3198	1	6812	6812		4.3292	0.38484	1	111030	+		56475	14102	32379	32380	69038	69038					0.10831150953913493
VYLLRVDPAL	10	Unmodified	_VYLLRVDPAL_					0	0	0			REV__nc|ENSG00000095539|Q9NTN9|SEMA4G	REV__nc|ENSG00000095539|Q9NTN9|SEMA4G	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	579.847699	1157.68084	-0.60702	-0.00035198	-2.7007	-0.001566	-3.3078	-0.001918	579.8460348903996	34.576	0.33453	34.576	34.362	34.697	0	0.081075	-8.6646E-05	NaN	4.3292	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60494	+		56476	14102	32379	32380							0.10831150953913493
VYLLTFPPL	9	Unmodified	_VYLLTFPPL_					0	0	0		SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|31|3|sense	SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|31|3|sense	SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|31|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.81689453125	2	531.815336	1061.61612	0.47942	0.00025496	1.0502	0.00055851	1.5296	0.00081348	531.8167311126964	81.476	1.705	81.476	81.108	82.813	0					198	67	6	0	0	0	0.32733	1	21341	21341		4.756	4.756	1	1710600			56477	23384	32380	32381	69039	69039					0.08777576147872423
VYLLTFPPL	9	Unmodified	_VYLLTFPPL_					0	0	0		SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|31|3|sense	SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|31|3|sense	SVA_F_dup735|chr14:33983789-33985094:-|1.263640136805012|0.1893590021110305|2.74|532.0|31|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8170776367188	2	531.815336	1061.61612	0.49315	0.00026227	1.7573	0.00093458	2.2505	0.0011968	531.816739436679	81.506	2.0425	81.482	81.161	83.204	-0.02404					202	83	5	0	0	0	0.32733	2	21345	21345;21553		4.756	2.2695	1	2014200			56478	23384	32380	32381	69040;69041	69040					0.08777576147872423
VYLLVTPRV	9	Unmodified	_VYLLVTPRV_					0	0	0		nc|ENSG00000185621|Q96KR4-2|LMLN;nc|ENSG00000185621|Q96KR4|LMLN;ENSG00000185621|ENST00000420910|LMLN;ENST00000472063.5_1_3:197712648-197723234:+|nuORF	nc|ENSG00000185621|Q96KR4-2|LMLN	nc|ENSG00000185621|Q96KR4-2|LMLN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3134765625	2	530.331685	1058.64882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.946	1	60.946	60.446	61.446	0								0	0	0	0.065718	1	14939	14939		56.177	16.227	1				56479	7543	32381	32382	69042	69042					0.12183783270756976
VYLLVTPRV	9	Unmodified	_VYLLVTPRV_					0	0	0		nc|ENSG00000185621|Q96KR4-2|LMLN;nc|ENSG00000185621|Q96KR4|LMLN;ENSG00000185621|ENST00000420910|LMLN;ENST00000472063.5_1_3:197712648-197723234:+|nuORF	nc|ENSG00000185621|Q96KR4-2|LMLN	nc|ENSG00000185621|Q96KR4-2|LMLN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.314208984375	2	530.331685	1058.64882	0.61839	0.00032795	0.44479	0.00023589	1.0632	0.00056384	530.3318069105538	60.911	0.42349	61.008	60.67	61.093	0.096985					22	14	2	0	0	0	0.066761	1	14910	14910		65.235	23.395	1	663800			56480	7543	32381	32382	69043	69043					0.12183783270756976
VYLLVTPRV	9	Unmodified	_VYLLVTPRV_					0	0	0		nc|ENSG00000185621|Q96KR4-2|LMLN;nc|ENSG00000185621|Q96KR4|LMLN;ENSG00000185621|ENST00000420910|LMLN;ENST00000472063.5_1_3:197712648-197723234:+|nuORF	nc|ENSG00000185621|Q96KR4-2|LMLN	nc|ENSG00000185621|Q96KR4-2|LMLN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.313720703125	2	530.331685	1058.64882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.938	1	60.929	60.429	61.429	-0.0094566								0	0	0	0.035558	1	14928	14928		65.235	23.395	1				56481	7543	32381	32382	69044	69044					0.12183783270756976
VYLMFLLLK	9	Unmodified	_VYLMFLLLK_					0	0	0		ENSG00000134121|ENST00000256509|CHL1;nc|ENSG00000134121|O00533|CHL1	ENSG00000134121|ENST00000256509|CHL1	ENSG00000134121|ENST00000256509|CHL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.8461303710938	2	570.348489	1138.68242	0.25172	0.00014357	-1.733	-0.00098844	-1.4813	-0.00084487	570.3474894824672	32.735	0.51591	32.789	32.63	33.146	0.054375					25	18	2	0	0	0	0.25879	1	6270	6270		4.756	2.4533	1	238050			56482	3757	32382	32383	69045	69045					0.11863068718298564
VYLMLKMSL	9	2 Oxidation (M)	_VYLM(Oxidation (M))LKM(Oxidation (M))SL_		VYLM(1)LKM(1)SL		VYLM(130)LKM(130)SL	0	0	2		ENST00000402538.7_1_2:33740127-33740184:+|nuORF	ENST00000402538.7_1_2:33740127-33740184:+|nuORF	ENST00000402538.7_1_2:33740127-33740184:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.3035278320312	2	565.303421	1128.59229	0.45945	0.00025973	0.78258	0.00044239	1.242	0.00070212	565.3045427664899	53.654	0.90979	53.654	53.386	54.296	0					69	33	4	0	0	0	0.00045155	2	12661	12661;12719		129.77	48.159	1	733070			56483	10197	32383	32384	69046;69047	69046		940;941			0.03313651327562184
VYLMLKMSL	9	2 Oxidation (M)	_VYLM(Oxidation (M))LKM(Oxidation (M))SL_		VYLM(1)LKM(1)SL		VYLM(120)LKM(120)SL	0	0	2		ENST00000402538.7_1_2:33740127-33740184:+|nuORF	ENST00000402538.7_1_2:33740127-33740184:+|nuORF	ENST00000402538.7_1_2:33740127-33740184:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.3037109375	2	565.303421	1128.59229	0.28637	0.00016189	0.74564	0.00042151	1.032	0.0005834	565.3036089702396	53.542	0.88839	53.598	53.404	54.293	0.056259					59	33	3	0	0	0	0.0013683	2	12646	12646;12696		118.07	106.94	1	863550			56484	10197	32383	32384	69048;69049	69048		940;941			0.03313651327562184
VYLMLKMSL	9	2 Oxidation (M)	_VYLM(Oxidation (M))LKM(Oxidation (M))SL_		VYLM(1)LKM(1)SL		VYLM(73)LKM(73)SL	0	0	2		ENST00000402538.7_1_2:33740127-33740184:+|nuORF	ENST00000402538.7_1_2:33740127-33740184:+|nuORF	ENST00000402538.7_1_2:33740127-33740184:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.3035278320312	2	565.303421	1128.59229	0.36929	0.00020876	0.10729	6.0653E-05	0.47658	0.00026941	565.303452336825	53.734	0.9142	53.724	53.507	54.421	-0.0096054					57	33	3	0	0	0	0.051692	1	12695	12695		72.968	72.968	1	638980			56485	10197	32383	32384	69050	69050		940;941			0.03313651327562184
VYLPAVVIEM	10	Unmodified	_VYLPAVVIEM_					0	0	0		nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.8192138671875	2	567.317386	1132.62022	0.46259	0.00026244	1.4128	0.00080149	1.8754	0.0010639	567.8192753051193	44.613	1.0902	44.613	44.115	45.206	0					142	39	5	0	0	0	0.2593	1	9948	9948		25.399	0	1	3293000			56486	2310	32384	32385	69051	69051					0.05921297579311613
VYLPGHFFHL	10	Unmodified	_VYLPGHFFHL_					0	0	0		ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP;GSAP|p.N794Kfs*6|1|0.07|ENSG00000186088|chr7:77311932-77311933|-/GTAGACCC|frameshift_variant;ENSG00000186088|ENST00000257626|GSAP	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2266540527344	3	410.553715	1228.63931	0.27831	0.00011426	-0.39091	-0.00016049	-0.1126	-4.6228E-05	410.55357577575313	63.857	0.53984	63.949	63.794	64.334	0.092884					41	19	3	0	0	0	0.31876	1	15803	15803		7.1017	0.90987	1	161520			56487	7586	32385	32386	69052	69052					0.034140149852191826
VYLPGHFFHL	10	Unmodified	_VYLPGHFFHL_					0	0	0		ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP;GSAP|p.N794Kfs*6|1|0.07|ENSG00000186088|chr7:77311932-77311933|-/GTAGACCC|frameshift_variant;ENSG00000186088|ENST00000257626|GSAP	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	410.553715	1228.63931	0.16654	6.8372E-05	-0.25334	-0.00010401	-0.086802	-3.5637E-05	410.55357058277656	64.024	0.57133	64.024	63.771	64.342	0	0.026822	0.00025303	NaN	10.8	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294940			56488	7586	32385	32386							0.034140149852191826
VYLPGHFFHL	10	Unmodified	_VYLPGHFFHL_					0	0	0		ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP;GSAP|p.N794Kfs*6|1|0.07|ENSG00000186088|chr7:77311932-77311933|-/GTAGACCC|frameshift_variant;ENSG00000186088|ENST00000257626|GSAP	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	ENST00000334003.11_1_7:76959552-77026708:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	410.553715	1228.63931	0.33865	0.00013903	-0.60891	-0.00024999	-0.27026	-0.00011096	410.88781237917476	64.028	0.51717	64.019	63.822	64.339	-0.0095291	0.021316	-0.00018491	NaN	10.8	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360170			56489	7586	32385	32386							0.034140149852191826
VYLPGLIILLL	11	Unmodified	_VYLPGLIILLL_					0	0	0		nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-3|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-5|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-6|TNFRSF11A;ENSG00000141655|ENST00000586569|TNFRSF11A	nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A	nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.186767578125	3	409.608937	1225.80498	0.11131	4.5594E-05	-2.8991	-0.0011875	-2.7878	-0.0011419	409.6076073798145	64.859	0.53107	64.847	64.441	64.972	-0.011337					24	18	2	0	0	0	0.33182	1	16022	16022		5.4027	2.7715	1	106590			56490	4402	32386	32387	69053	69053					0.20111228721384578
VYLPGLIILLL	11	Unmodified	_VYLPGLIILLL_					0	0	0		nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-3|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-5|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-6|TNFRSF11A;ENSG00000141655|ENST00000586569|TNFRSF11A	nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A	nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	409.608937	1225.80498	0.042865	1.7558E-05	-3.0465	-0.0012479	-3.0037	-0.0012303	409.60767384758435	64.766	0.33944	64.766	64.621	64.96	0	0.033872	-0.00019839	NaN	8.4443	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88932			56491	4402	32386	32387							0.20111228721384578
VYLPLTSHI	9	Unmodified	_VYLPLTSHI_					0	0	0		ENSG00000106266|ENST00000222990|SNX8;ENST00000480807.1_1_7:2294693-2297236:-|nuORF	ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8004760742188	2	521.800217	1041.58588	0.29684	0.00015489	0.039547	2.0636E-05	0.33639	0.00017553	521.8001971560192	59.506	0.90231	59.506	59.162	60.065	0					88	31	4	0	0	0	0.0036289	1	14498	14498		104.8	68.755	1	4650000			56492	2066	32387	32388	69054	69054					0.0667521748271156
VYLPLTSHI	9	Unmodified	_VYLPLTSHI_					0	0	0		ENSG00000106266|ENST00000222990|SNX8;ENST00000480807.1_1_7:2294693-2297236:-|nuORF	ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.8004760742188	2	521.800217	1041.58588	0.33051	0.00017246	0.054512	2.8445E-05	0.38502	0.0002009	521.8002027478	59.333	0.85629	59.424	59.101	59.957	0.091301					88	30	4	0	0	0	0.0069594	1	14442	14442		92.822	64.335	1	4899600			56493	2066	32387	32388	69055	69055					0.0667521748271156
VYLPLTSHI	9	Unmodified	_VYLPLTSHI_					0	0	0		ENSG00000106266|ENST00000222990|SNX8;ENST00000480807.1_1_7:2294693-2297236:-|nuORF	ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.800537109375	2	521.800217	1041.58588	0.5583	0.00029132	-0.090953	-4.7459E-05	0.46735	0.00024386	521.8001603148392	59.445	0.88057	59.433	59.087	59.968	-0.011486					90	30	4	0	0	0	0.0016474	1	14438	14438		100.37	64.244	1	4546300			56494	2066	32387	32388	69056	69056					0.0667521748271156
VYLPMHHF	8	Unmodified	_VYLPMHHF_					0	0	0		ENST00000402802.7_1_7:537201-537390:-|nuORF	ENST00000402802.7_1_7:537201-537390:-|nuORF	ENST00000402802.7_1_7:537201-537390:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2832641601562	2	522.260205	1042.50586	0.29687	0.00015504	1.9302	0.0010081	2.2271	0.0011631	522.2613241699036	62.045	1.7264	62.037	61.297	63.024	-0.0085564					87	63	2	0	0	0	0.33618	1	15496	15496		17.087	1.3183	1	224040			56495	10204	32388	32389	69057	69057					-0.013695473921416124
VYLPNINKI	9	Unmodified	_VYLPNINKI_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.3217163085938	2	537.321317	1072.62808	0.6071	0.00032621	-0.78235	-0.00042038	-0.17526	-9.417E-05	537.3213308094546	57.322	2.3915	57.322	56.823	59.215	0					251	84	5	0	0	0	4.6984E-11	4	13816	13769;13816;13865;13909		187.93	78.3	1	33599000			56496	982	32389	32390	69058;69059;69060;69061	69059					0.09467192891088416
VYLPNINKI	9	Unmodified	_VYLPNINKI_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.3217163085938	2	537.321317	1072.62808	0.39808	0.0002139	-0.54764	-0.00029426	-0.14956	-8.0362E-05	537.3214780632486	57.141	2.5596	57.22	56.778	59.338	0.078674					274	92	5	0	0	0	4.6984E-11	3	13817	13725;13767;13817		187.93	90.855	1	39046000			56497	982	32389	32390	69062;69063;69064	69064					0.09467192891088416
VYLPNINKI	9	Unmodified	_VYLPNINKI_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.3217163085938	2	537.321317	1072.62808	0.37368	0.00020079	-0.57499	-0.00030896	-0.20131	-0.00010817	537.3213947557922	57.356	2.7011	57.339	56.811	59.512	-0.0172					273	97	5	0	0	0	4.6984E-11	4	13849	13756;13801;13849;13902		187.93	90.855	1	37405000			56498	982	32389	32390	69065;69066;69067;69068	69067					0.09467192891088416
VYLPPEAFTF	10	Unmodified	_VYLPPEAFTF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.30615234375	2	592.305332	1182.59611	0.62467	0.00037	0.091448	5.4165E-05	0.71612	0.00042416	592.3055065472716	85.553	1.3079	85.553	85.098	86.406	0					106	49	3	0	0	0	0.0036033	3	22518	22419;22518;22669		99.799	72.915	1	589130			56499	3521	32390	32391	69069;69070;69071	69070					0.012117804172703472
VYLPPEAFTF	10	Unmodified	_VYLPPEAFTF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.3058471679688	2	592.305332	1182.59611	0.58235	0.00034493	0.016656	9.8654E-06	0.59901	0.0003548	592.8067412983996	85.498	1.2913	85.579	85.1	86.392	0.080887					130	48	4	0	0	0	0.0023361	4	22433	22383;22433;22492;22544		107.19	80.303	1	590150			56500	3521	32390	32391	69072;69073;69074;69075	69073					0.012117804172703472
VYLPPEAFTF	10	Unmodified	_VYLPPEAFTF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.30615234375	2	592.305332	1182.59611	0.5941	0.00035189	-0.0051661	-3.0599E-06	0.58894	0.00034883	592.3054740322024	85.563	1.2165	85.554	85.066	86.283	-0.0090027					106	45	3	0	0	0	0.0036033	1	22540	22540		99.799	72.915	1	686230			56501	3521	32390	32391	69076	69076					0.012117804172703472
VYLPRLYE	8	Unmodified	_VYLPRLYE_					0	0	0		ENST00000013070.10_1_14:93685685-93686635:+|nuORF	ENST00000013070.10_1_14:93685685-93686635:+|nuORF	ENST00000013070.10_1_14:93685685-93686635:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7635498046875	2	526.792392	1051.57023	0.76077	0.00040077	-0.88014	-0.00046365	-0.11937	-6.2882E-05	526.7919881344802	65.81	0.66565	65.81	65.518	66.183	0					32	23	2	0	0	0	0.3366	1	16545	16545		18.135	1.0221	1	231450			56502	8768	32391	32392	69077	69077					0.0465093096563578
VYLPRVLDI	9	Unmodified	_VYLPRVLDI_					0	0	0		ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7924194335938	2	544.329142	1086.64373	0.48707	0.00026512	0.15608	8.4957E-05	0.64314	0.00035008	544.329309633467	70.234	0.37775	70.234	69.972	70.35	0					18	13	2	0	0	0	0.25202	1	17712	17712		6.7232	0	1	138490			56503	8126	32392	32393	69078	69078					0.10387479408132094
VYLPTAFLL	9	Unmodified	_VYLPTAFLL_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENSG00000177054|ENST00000446113|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.8076782226562	2	518.807511	1035.60047	0.23718	0.00012305	-0.14244	-7.3899E-05	0.094743	4.9153E-05	518.8074790217811	95.092	0.88381	95.175	94.831	95.715	0.082779					224	81	4	0	0	0	0.0061338	2	25383	25344;25383		85.357	49.313	1	786910			56504	6958	32393	32394	69079;69080	69080					0.08409289630844796
VYLPTAFLL	9	Unmodified	_VYLPTAFLL_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENSG00000177054|ENST00000446113|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.8074951171875	2	518.807511	1035.60047	0.38615	0.00020034	-0.32703	-0.00016966	0.059121	3.0672E-05	518.8073922436788	95.174	0.9212	95.172	94.91	95.831	-0.0020142					152	86	3	0	0	0	0.00097449	2	25429	25388;25429		123.1	69.521	1	751990			56505	6958	32393	32394	69081;69082	69082					0.08409289630844796
VYLPTAFLL	9	Unmodified	_VYLPTAFLL_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENSG00000177054|ENST00000446113|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	518.807511	1035.60047	0.19259	9.9916E-05	-0.17041	-8.8408E-05	0.022182	1.1508E-05	518.8074674693094	95.202	0.8235	95.202	94.905	95.728	0	0.018571	4.0632E-05	NaN	123.1	164	78	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	626130			56506	6958	32393	32394							0.08409289630844796
VYLPTHTSL	9	Unmodified	_VYLPTHTSL_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7821655273438	2	515.782025	1029.5495	0.63874	0.00032945	-0.37391	-0.00019285	0.26484	0.0001366	515.781762607913	47.181	0.61629	47.181	46.932	47.549	0					63	21	4	0	0	0	5.2996E-06	3	10720	10673;10720;10774		156.16	116.2	1	5716100			56507	386	32394	32395	69083;69084;69085	69084					0.035903405860153725
VYLPTHTSL	9	Unmodified	_VYLPTHTSL_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7822265625	2	515.782025	1029.5495	0.21559	0.0001112	0.077674	4.0063E-05	0.29326	0.00015126	515.7819607973674	47.159	0.64427	47.212	46.955	47.599	0.052574					76	23	4	0	0	0	9.3868E-05	4	10692	10645;10692;10743;10779		141.83	101.88	1	5891300			56508	386	32394	32395	69086;69087;69088;69089	69087					0.035903405860153725
VYLPTHTSL	9	Unmodified	_VYLPTHTSL_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.7822265625	2	515.782025	1029.5495	0.87536	0.0004515	-0.60121	-0.00031009	0.27415	0.0001414	515.781626494154	47.161	0.60016	47.215	46.972	47.572	0.054375					73	21	4	0	0	0	0.00056175	3	10702	10653;10702;10756		128.37	90.214	1	6678500			56509	386	32394	32395	69090;69091;69092	69091					0.035903405860153725
VYLQEFELL	9	Unmodified	_VYLQEFELL_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.3109741210938	2	577.310615	1152.60668	0.398	0.00022977	0.69635	0.00040201	1.0943	0.00063178	577.3107365063873	87.865	0.74423	87.865	87.558	88.302	0					82	36	3	0	0	0	0.014206	3	23193	23148;23193;23252		72.968	10.395	1	692640			56510	3938	32395	32396	69093;69094;69095	69094					0.036477630716944986
VYLQEFELL	9	Unmodified	_VYLQEFELL_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3108520507812	2	577.310615	1152.60668	0.39426	0.00022761	0.92671	0.000535	1.321	0.00076261	577.3107372620902	87.732	0.90893	87.819	87.459	88.368	0.087097					127	47	3	0	0	0	0.014206	3	23136	23097;23136;23179		72.968	19.135	1	664850			56511	3938	32395	32396	69096;69097;69098	69097					0.036477630716944986
VYLQEFELL	9	Unmodified	_VYLQEFELL_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.310791015625	2	577.310615	1152.60668	0.34905	0.00020151	0.5984	0.00034546	0.94745	0.00054697	577.3107791640873	87.893	0.798	87.89	87.584	88.382	-0.0028381					88	41	3	0	0	0	0.014206	3	23178	23135;23178;23221		72.968	10.395	1	756400			56512	3938	32395	32396	69099;69100;69101	69100					0.036477630716944986
VYLQNWSHVL	10	Unmodified	_VYLQNWSHVL_					0	0	0		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-6|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;ENST00000392357.1_1_17:80012338-80013241:+|nuORF	ENSG00000169727|ENST00000578552|GPS1	ENSG00000169727|ENST00000578552|GPS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.8327026367188	2	629.83258	1257.65061	0.068332	4.3037E-05	0.15984	0.00010067	0.22817	0.00014371	629.8320952207409	65.077	0.51095	65.077	64.834	65.345	0					38	18	4	0	0	0	0.02113	1	16233	16233		71.708	46.717	1	359740			56513	6379	32396	32397	69102	69102					0.03208792288683071
VYLQNWSHVL	10	Unmodified	_VYLQNWSHVL_					0	0	0		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-6|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;ENST00000392357.1_1_17:80012338-80013241:+|nuORF	ENSG00000169727|ENST00000578552|GPS1	ENSG00000169727|ENST00000578552|GPS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	629.83258	1257.65061	0.048577	3.0595E-05	-0.2599	-0.00016369	-0.21132	-0.0001331	629.8320319227909	64.977	0.45046	65.066	64.844	65.295	0.088882	0.0086465	1.9729E-05	NaN	71.708	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313270			56514	6379	32396	32397							0.03208792288683071
VYLQNWSHVL	10	Unmodified	_VYLQNWSHVL_					0	0	0		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-6|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;ENST00000392357.1_1_17:80012338-80013241:+|nuORF	ENSG00000169727|ENST00000578552|GPS1	ENSG00000169727|ENST00000578552|GPS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	629.83258	1257.65061	-0.0078179	-4.9239E-06	-0.68302	-0.00043019	-0.69084	-0.00043511	629.8319564041467	65.041	0.50819	65.029	64.78	65.288	-0.01133	-0.028202	-0.00051326	NaN	71.708	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307500			56515	6379	32396	32397							0.03208792288683071
VYLSDALLSGF	11	Unmodified	_VYLSDALLSGF_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.3726196289062	2	592.813522	1183.61249	0.49949	0.0002961	0.56641	0.00033578	1.0659	0.00063188	593.3153745963926	88.813	0.50445	88.903	88.593	89.098	0.089195					31	20	2	0	0	0	0.2973	1	23446	23446		26.268	18.358	1	113640			56516	5198	32397	32398	69103	69103					0.028028615833591175
VYLSFPFSLSI	11	Unmodified	_VYLSFPFSLSI_					0	0	0		ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENST00000566338.5_1_15:31233675-31240771:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.893310546875	3	424.900668	1271.68018	-0.17595	-7.476E-05	2.8547	0.0012129	2.6787	0.0011382	424.9015422037895	19.473	0.34241	19.357	19.145	19.488	-0.11592					16	11	2	0	0	0	0.38623	1	2270	2270		7.0371	3.7174	1	32045			56517	11980	32398	32399	69104	69104					0.055203115141921444
VYLSMSYYF	9	Oxidation (M)	_VYLSM(Oxidation (M))SYYF_		VYLSM(1)SYYF		VYLSM(93)SYYF	0	0	1		ENST00000533138.1_1_11:61732822-61734897:-|nuORF;ENST00000534719.1_1_11:61732389-61734897:-|nuORF;ENSG00000167996|ENST00000273550|FTH1	ENST00000533138.1_1_11:61732822-61734897:-|nuORF	ENST00000533138.1_1_11:61732822-61734897:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.7667236328125	2	594.767726	1187.5209	0.51407	0.00030575	-0.75963	-0.0004518	-0.24556	-0.00014605	594.7669851025965	71.542	0.86992	71.542	71.262	72.132	0					79	30	3	0	0	0	0.0041925	3	18184	18184;18235;18287		92.822	66.554	1	1296500			56518	6231	32399	32400	69105;69106;69107	69105		734			-0.06536145105474134
VYLSMSYYF	9	Oxidation (M)	_VYLSM(Oxidation (M))SYYF_		VYLSM(1)SYYF		VYLSM(130)SYYF	0	0	1		ENST00000533138.1_1_11:61732822-61734897:-|nuORF;ENST00000534719.1_1_11:61732389-61734897:-|nuORF;ENSG00000167996|ENST00000273550|FTH1	ENST00000533138.1_1_11:61732822-61734897:-|nuORF	ENST00000533138.1_1_11:61732822-61734897:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7676391601562	2	594.767726	1187.5209	0.48295	0.00028724	-0.81433	-0.00048434	-0.33138	-0.00019709	594.7670900597369	71.474	0.85074	71.531	71.293	72.144	0.056572					93	30	4	0	0	0	0.00077644	3	18201	18134;18201;18251		125.62	92.839	1	1420500			56519	6231	32399	32400	69108;69109;69110	69109		734			-0.06536145105474134
VYLSMSYYF	9	Oxidation (M)	_VYLSM(Oxidation (M))SYYF_		VYLSM(1)SYYF		VYLSM(100)SYYF	0	0	1		ENST00000533138.1_1_11:61732822-61734897:-|nuORF;ENST00000534719.1_1_11:61732389-61734897:-|nuORF;ENSG00000167996|ENST00000273550|FTH1	ENST00000533138.1_1_11:61732822-61734897:-|nuORF	ENST00000533138.1_1_11:61732822-61734897:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.7666015625	2	594.767726	1187.5209	0.50099	0.00029797	-0.7733	-0.00045994	-0.27232	-0.00016196	594.7670258522633	71.617	0.82821	71.589	71.315	72.143	-0.027275					78	29	3	0	0	0	0.0032391	3	18196	18196;18247;18298		100.37	65.97	1	1582000			56520	6231	32399	32400	69111;69112;69113	69111		734			-0.06536145105474134
VYLSNVVLF	9	Unmodified	_VYLSNVVLF_					0	0	0		nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3025512695312	2	527.302593	1052.59063	0.74191	0.00039121	-0.39586	-0.00020874	0.34605	0.00018247	527.3022921651124	84.55	0.79096	84.55	84.278	85.069	0					63	29	3	0	0	0	0.0011817	1	22183	22183		120.45	42.301	1	952550			56521	4286	32400	32401	69114	69114					0.06644101625443
VYLSNVVLF	9	Unmodified	_VYLSNVVLF_					0	0	0		nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3026733398438	2	527.302593	1052.59063	0.67249	0.0003546	-0.41946	-0.00022118	0.25303	0.00013342	527.3022464159093	84.483	1.1586	84.562	84.203	85.361	0.079033					95	45	3	0	0	0	0.0015545	1	22148	22148		115.69	26.788	1	843990			56522	4286	32400	32401	69115	69115					0.06644101625443
VYLTDPQGL	9	Unmodified	_VYLTDPQGL_					0	0	0		ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000464499.5_1_16:70501260-70504246:+|nuORF	ENSG00000157353|ENST00000288078|FCSK	ENSG00000157353|ENST00000288078|FCSK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.5932922363281	2	503.266207	1004.51786	0.26397	0.00013284	0.60258	0.00030326	0.86654	0.0004361	503.2663238554082	59.195	0.64342	59.195	58.917	59.56	0					39	22	2	0	0	0	0.16853	1	14354	14354		31.268	17.362	1	568020			56523	5299	32401	32402	69116	69116					0.01578347832048621
VYLTDPQGLVL	11	Unmodified	_VYLTDPQGLVL_					0	0	0		ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000464499.5_1_16:70501260-70504246:+|nuORF	ENSG00000157353|ENST00000288078|FCSK	ENSG00000157353|ENST00000288078|FCSK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.342529296875	2	609.342446	1216.67034	0.63458	0.00038668	0.0016731	1.0195E-06	0.63625	0.0003877	609.3422321955009	78.774	0.85505	78.774	78.511	79.366	0					88	34	4	0	0	0	0.066406	1	20419	20419		81.915	53.421	1	889450			56524	5299	32402	32403	69117	69117					0.07067123508795703
VYLTDPQGLVL	11	Unmodified	_VYLTDPQGLVL_					0	0	0		ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000464499.5_1_16:70501260-70504246:+|nuORF	ENSG00000157353|ENST00000288078|FCSK	ENSG00000157353|ENST00000288078|FCSK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.3426513671875	2	609.342446	1216.67034	0.589	0.0003589	-0.050806	-3.0958E-05	0.53819	0.00032794	609.3422688429378	78.714	0.84105	78.772	78.528	79.369	0.058151					86	36	4	0	0	0	0.012355	3	20350	20350;20395;20436		87.258	55.99	1	1031400			56525	5299	32402	32403	69118;69119;69120	69118					0.07067123508795703
VYLTDPQGLVL	11	Unmodified	_VYLTDPQGLVL_					0	0	0		ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000464499.5_1_16:70501260-70504246:+|nuORF	ENSG00000157353|ENST00000288078|FCSK	ENSG00000157353|ENST00000288078|FCSK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.3427124023438	2	609.342446	1216.67034	0.62037	0.00037802	-0.10979	-6.6898E-05	0.51058	0.00031112	609.3422288031591	78.801	0.83748	78.77	78.532	79.37	-0.030434					93	34	4	0	0	0	0.010584	2	20409	20409;20457		91.085	56.153	1	953980			56526	5299	32402	32403	69121;69122	69121					0.07067123508795703
VYLTDPVLF	9	Unmodified	_VYLTDPVLF_					0	0	0		nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7946166992188	2	533.794601	1065.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.686	1	83.686	83.186	84.186	0								0	0	0	0.001781	1	21903	21903		92.822	50.728	1				56527	2773	32403	32404	69123	69123					0.044483953885674055
VYLTDPVLF	9	Unmodified	_VYLTDPVLF_					0	0	0		nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7947387695312	2	533.794601	1065.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.768	1	83.768	83.268	84.268	0								0	0	0	0.001781	1	21928	21928		92.822	50.728	1				56528	2773	32403	32404	69124	69124					0.044483953885674055
VYLTDPVLF	9	Unmodified	_VYLTDPVLF_					0	0	0		nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7947998046875	2	533.794601	1065.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.828	1	83.828	83.328	84.328	0								0	0	0	0.00071977	1	21947	21947		97.075	52.668	1				56529	2773	32403	32404	69125	69125					0.044483953885674055
VYLTDPVLF	9	Unmodified	_VYLTDPVLF_					0	0	0		nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7960815429688	2	533.794601	1065.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.978	1	83.978	83.478	84.478	0								0	0	0	0.070392	1	21993	21993		54.774	26.287	1				56530	2773	32403	32404	69126	69126					0.044483953885674055
VYLTDPVLF	9	Unmodified	_VYLTDPVLF_					0	0	0		nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7947387695312	2	533.794601	1065.57465	0.51627	0.00027558	-1.0978	-0.00058601	-0.58154	-0.00031043	533.7946388177578	83.733	1.4662	83.81	82.756	84.223	0.077095					99	57	4	0	0	0	0.0061338	2	21908	21908;21956		85.357	43.262	1	948220			56531	2773	32403	32404	69127;69128	69127					0.044483953885674055
VYLTDPVLF	9	Unmodified	_VYLTDPVLF_					0	0	0		nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	nc|ENSG00000117114|O95490-3|ADGRL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.794677734375	2	533.794601	1065.57465	0.67216	0.00035879	-0.44112	-0.00023547	0.23103	0.00012332	533.7946083675419	83.794	0.89694	83.777	83.401	84.298	-0.016823					84	40	4	0	0	0	0.0061338	3	21905	21905;21933;21979		85.357	43.262	1	1167300			56532	2773	32403	32404	69129;69130;69131	69129					0.044483953885674055
VYLTHLDYV	9	Unmodified	_VYLTHLDYV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7955932617188	2	561.795132	1121.57571	0.368	0.00020674	0.81098	0.0004556	1.179	0.00066235	561.7957265167266	56.736	0.48379	56.736	56.528	57.012	0					38	17	3	0	0	0	0.0041925	1	13647	13647		92.822	50.728	1	473650			56533	1211	32404	32405	69132	69132					0.01978609757452432
VYLTHLDYV	9	Unmodified	_VYLTHLDYV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7950439453125	2	561.795132	1121.57571	0.55443	0.00031147	0.32718	0.00018381	0.88161	0.00049529	561.7955472379189	56.663	0.46761	56.742	56.543	57.011	0.078671					38	17	3	0	0	0	0.1524	1	13607	13607		39.957	20.518	1	479200			56534	1211	32404	32405	69133	69133					0.01978609757452432
VYLTHLDYV	9	Unmodified	_VYLTHLDYV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7957763671875	2	561.795132	1121.57571	0.65082	0.00036563	0.30607	0.00017195	0.95689	0.00053758	561.7953426755203	56.827	0.52295	56.808	56.592	57.115	-0.019077					39	18	3	0	0	0	0.0085732	1	13686	13686		81.613	45.569	1	606680			56535	1211	32404	32405	69134	69134					0.01978609757452432
VYLTIKPLNL	10	Unmodified	_VYLTIKPLNL_					0	0	0		ENST00000496956.1_1_1:63999833-64017523:+|nuORF;nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7	ENST00000496956.1_1_1:63999833-64017523:+|nuORF	ENST00000496956.1_1_1:63999833-64017523:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8486328125	2	587.365724	1172.7169	0.36489	0.00021432	-0.3206	-0.00018831	0.044293	2.6016E-05	587.3652893036685	68.965	0.4174	68.965	68.812	69.229	0					23	14	2	0	0	0	0.25117	1	17417	17417		36.506	23.975	1	203180			56536	8193	32405	32406	69135	69135					0.13744608130741653
VYLTIKPLNL	10	Unmodified	_VYLTIKPLNL_					0	0	0		ENST00000496956.1_1_1:63999833-64017523:+|nuORF;nc|ENSG00000203965|A8K855-2|EFCAB7;ENSG00000203965|ENST00000371088|EFCAB7	ENST00000496956.1_1_1:63999833-64017523:+|nuORF	ENST00000496956.1_1_1:63999833-64017523:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8480834960938	2	587.365724	1172.7169	0.41819	0.00024563	-0.66017	-0.00038776	-0.24198	-0.00014213	587.3651249570448	68.975	0.46323	69.047	68.854	69.318	0.071938					30	16	3	0	0	0	0.3144	1	17367	17367		13.042	2.2185	1	197350			56537	8193	32405	32406	69136	69136					0.13744608130741653
VYLVDQFAKI	10	Unmodified	_VYLVDQFAKI_					0	0	0			REV__ENST00000478900.5_1_Y:15481200-15591401:-|nuORF	REV__ENST00000478900.5_1_Y:15481200-15591401:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.3217163085938	2	598.339707	1194.66486	0.60906	0.00036443	-0.59875	-0.00035826	0.010309	6.1683E-06	598.3391609575657	53.454	0.449	53.454	53.173	53.622	0					26	16	2	0	0	0	0.31039	1	12596	12596		18.146	4.2403	1	330720	+		56538	18292	32406	32407	69137	69137					0.0753144471698306
VYLVGDKSL	9	Unmodified	_VYLVGDKSL_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1	REV__ENSG00000153107|ENST00000341068|ANAPC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.2843933105469	2	497.2844	992.554247	0.40166	0.00019974	-0.041825	-2.0799E-05	0.35983	0.00017894	497.28433810804097	42.892	0.62392	42.977	42.731	43.355	0.085201					54	22	4	0	0	0	0.17787	2	9419	9419;9472		26.884	4.1474	1	1303700	+		56539	16610	32407	32408	69138;69139	69138					0.05767224728754172
VYLVSAMLL	9	Oxidation (M)	_VYLVSAM(Oxidation (M))LL_		VYLVSAM(1)LL		VYLVSAM(67)LL	0	0	1		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.35009765625	2	512.791004	1023.56745	0.56919	0.00029187	0.89773	0.00046035	1.4669	0.00075222	512.791531300096	77.318	0.65907	77.318	77.06	77.719	0					51	23	3	0	0	0	0.05508	1	19956	19956		67.344	45.597	1	322650			56540	7428	32408	32409	69140	69140		823			0.056613395164959
VYLVSAMLL	9	Oxidation (M)	_VYLVSAM(Oxidation (M))LL_		VYLVSAM(1)LL		VYLVSAM(74)LL	0	0	1		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.3499755859375	2	512.791004	1023.56745	0.47834	0.00024529	0.74649	0.00038279	1.2248	0.00062808	512.7915001371724	77.286	0.70224	77.341	77.09	77.792	0.055412					63	24	4	0	0	0	0.037153	1	19933	19933		74.423	52.676	1	536600			56541	7428	32408	32409	69141	69141		823			0.056613395164959
VYLVSAMLL	9	Oxidation (M)	_VYLVSAM(Oxidation (M))LL_		VYLVSAM(1)LL		VYLVSAM(67)LL	0	0	1		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.35009765625	2	512.791004	1023.56745	0.61293	0.0003143	0.42697	0.00021895	1.0399	0.00053325	512.7912601972151	77.369	0.74002	77.337	77.072	77.812	-0.031334					58	26	3	0	0	0	0.05508	1	19944	19944		67.344	45.597	1	379240			56542	7428	32408	32409	69142	69142		823			0.056613395164959
VYLVTTLDN	9	Unmodified	_VYLVTTLDN_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.T2306*|1|0.15|ENSG00000197969|chr9:77340440-77340441|AC/-|frameshift_variant;VPS13A|p.L1845Vfs*28|1|0.03|ENSG00000197969|chr9:77321285-77321286|-/GTACATT|frameshift_variant;VPS13A|p.Y1116Ifs*27|1|0.25|ENSG00000197969|chr9:77293345-77293345|T/-|frameshift_variant	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7999877929688	2	519.279315	1036.54408	0.55068	0.00028596	0.42674	0.0002216	0.97742	0.00050755	519.2796436601454	74.658	1.1715	74.626	74.387	75.558	-0.03141					48	42	2	0	0	0	0.21137	1	19286	19286		24.674	6.5389	1	265340			56543	8020	32409	32410	69143	69143					0.027266170035318282
VYLYDRIR	8	Unmodified	_VYLYDRIR_					0	0	0		ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	ENSG00000107651|ENST00000369075|SEC23IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7658081054688	2	549.308741	1096.60293	0.17913	9.8398E-05	-0.97419	-0.00053513	-0.79506	-0.00043673	549.3085414147685	28.399	0.39874	28.399	28.241	28.64	0					23	13	3	0	0	0	0.34218	1	4973	4973		9.3474	0	1	130900			56544	2138	32410	32411	69144	69144					0.05849138088501604
VYLYKQSF	8	Unmodified	_VYLYKQSF_					0	0	0		ENSG00000153404|ENST00000637938|PLEKHG4B;ENST00000504041.1_1_5:169407-179718:+|nuORF	ENSG00000153404|ENST00000637938|PLEKHG4B	ENSG00000153404|ENST00000637938|PLEKHG4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7567749023438	2	524.279118	1046.54368	0.4854	0.00025449	-0.76927	-0.00040331	-0.28386	-0.00014882	524.2786936507438	31.714	1.188	31.714	31.394	32.582	0					73	42	2	0	0	0	0.34218	1	6158	6158		9.3474	1.4373	1	1309500			56545	5076	32411	32412	69145	69145					0.022272420743320254
VYLYTRPLA	9	Unmodified	_VYLYTRPLA_					0	0	0			REV__nc|nan|O96002|CXorf1	REV__nc|nan|O96002|CXorf1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.8342895507812	2	548.313492	1094.61243	0.58282	0.00031957	-0.25493	-0.00013978	0.3279	0.00017979	548.3134605823157	68.816	0.28873	68.888	68.705	68.993	0.071938					16	10	2	0	0	0	0.24913	1	17347	17347		12.532	4.6214	1	87370	+		56546	23267	32412	32413	69146	69146					0.0689090637404206
VYMDWYEKF	9	Oxidation (M)	_VYM(Oxidation (M))DWYEKF_		VYM(1)DWYEKF		VYM(130)DWYEKF	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	648.783447265625	2	648.783907	1295.55326	0.36744	0.00023839	-0.33505	-0.00021737	0.032392	2.1015E-05	648.7835733781453	60.361	0.78588	60.361	60.065	60.851	0					74	28	3	0	0	0	0.00051734	3	14718	14718;14774;14829		128.93	98.296	1	3040800			56547	4558	32413	32414	69147;69148;69149	69147		578			-0.08269357702488378
VYMDWYEKF	9	Oxidation (M)	_VYM(Oxidation (M))DWYEKF_		VYM(1)DWYEKF		VYM(140)DWYEKF	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	648.783447265625	2	648.783907	1295.55326	0.058489	3.7947E-05	-0.061626	-3.9982E-05	-0.0031362	-2.0347E-06	648.7837963137439	60.302	0.84673	60.397	60.077	60.923	0.095093					68	30	3	0	0	0	0.00010125	3	14678	14678;14733;14782		140.63	102.66	1	2980100			56548	4558	32413	32414	69150;69151;69152	69150		578			-0.08269357702488378
VYMDWYEKF	9	Oxidation (M)	_VYM(Oxidation (M))DWYEKF_		VYM(1)DWYEKF		VYM(140)DWYEKF	0	0	1		ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	ENSG00000144028|ENST00000323853|SNRNP200	ENSG00000144028|ENST00000323853|SNRNP200	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	648.7841186523438	2	648.783907	1295.55326	0.44852	0.00029099	-0.31757	-0.00020604	0.13094	8.4953E-05	648.7836209000451	60.404	0.77803	60.392	60.108	60.886	-0.011486					73	28	3	0	0	0	0.00010125	3	14742	14742;14792;14863		140.63	102.66	1	3649000			56549	4558	32413	32414	69153;69154;69155	69153		578			-0.08269357702488378
VYMELSQKL	9	Oxidation (M)	_VYM(Oxidation (M))ELSQKL_		VYM(1)ELSQKL		VYM(190)ELSQKL	0	0	1		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.7944946289062	2	563.794275	1125.574	0.14104	7.9516E-05	-3.442	-0.0019406	-3.301	-0.0018611	563.7923188764684	41.067	0.83672	41.067	40.576	41.413	0					80	30	3	0	0	0	3.0646E-11	2	8817	8817;8865		193.29	115.14	1	1216400			56550	4273	32414	32415	69156;69157	69156		545			0.016232326772069428
VYMELSQKL	9	Oxidation (M)	_VYM(Oxidation (M))ELSQKL_		VYM(1)ELSQKL		VYM(170)ELSQKL	0	0	1		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.794189453125	2	563.794275	1125.574	0.47334	0.00026687	-3.286	-0.0018526	-2.8127	-0.0015858	563.792508745243	40.834	1.0397	40.927	40.474	41.513	0.09267					91	38	4	0	0	0	3.6949E-07	1	8740	8740		165.72	87.571	1	1353800			56551	4273	32414	32415	69158	69158		545			0.016232326772069428
VYMELSQKL	9	Oxidation (M)	_VYM(Oxidation (M))ELSQKL_		VYM(1)ELSQKL		VYM(130)ELSQKL	0	0	1		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.7943725585938	2	563.794275	1125.574	0.19477	0.00010981	-3.2931	-0.0018567	-3.0984	-0.0017468	563.7924074681333	40.749	0.78305	40.849	40.453	41.236	0.099407					73	28	3	0	0	0	0.00051734	1	8708	8708		128.93	60.852	1	1474000			56552	4273	32414	32415	69159	69159		545			0.016232326772069428
VYMGLLAVF	9	Oxidation (M)	_VYM(Oxidation (M))GLLAVF_		VYM(1)GLLAVF		VYM(56)GLLAVF	0	0	1		ENST00000533687.1_1_11:118969111-118971155:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1	ENST00000533687.1_1_11:118969111-118971155:-|nuORF	ENST00000533687.1_1_11:118969111-118971155:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.77783203125	2	514.777896	1027.54124	0.51537	0.0002653	-0.51855	-0.00026694	-0.0031828	-1.6384E-06	514.7776087661663	86.102	1.0664	86.102	85.637	86.703	0					119	41	4	0	0	0	0.041522	2	22637	22586;22637		56.048	20.004	1	1339800			56553	6615	32415	32416	69160;69161	69161		763			0.02857070345021384
VYMGLLAVF	9	Oxidation (M)	_VYM(Oxidation (M))GLLAVF_		VYM(1)GLLAVF		VYM(46)GLLAVF	0	0	1		ENST00000533687.1_1_11:118969111-118971155:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1	ENST00000533687.1_1_11:118969111-118971155:-|nuORF	ENST00000533687.1_1_11:118969111-118971155:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7777709960938	2	514.777896	1027.54124	0.36746	0.00018916	-0.45848	-0.00023601	-0.091018	-4.6854E-05	514.7777026779805	86.041	1.8985	86.126	84.652	86.551	0.084251					149	73	4	0	0	0	0.069231	1	22587	22587		45.75	17.263	1	1267600			56554	6615	32415	32416	69162	69162		763			0.02857070345021384
VYMGLLAVF	9	Oxidation (M)	_VYM(Oxidation (M))GLLAVF_		VYM(1)GLLAVF		VYM(56)GLLAVF	0	0	1		ENST00000533687.1_1_11:118969111-118971155:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1	ENST00000533687.1_1_11:118969111-118971155:-|nuORF	ENST00000533687.1_1_11:118969111-118971155:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7778930664062	2	514.777896	1027.54124	0.38146	0.00019637	-0.46109	-0.00023736	-0.079632	-4.0993E-05	514.7777137761875	86.131	1.6532	86.122	85.09	86.744	-0.0090027					147	62	4	0	0	0	0.041522	2	22619	22570;22619		56.048	20.004	1	1214800			56555	6615	32415	32416	69163;69164	69164		763			0.02857070345021384
VYMIRVYLL	9	Oxidation (M)	_VYM(Oxidation (M))IRVYLL_		VYM(1)IRVYLL		VYM(82)IRVYLL	0	0	1		ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.3388061523438	2	593.338652	1184.66275	0.46096	0.0002735	-0.24904	-0.00014776	0.21192	0.00012574	593.3384242053812	70.435	0.90072	70.435	69.946	70.847	0					67	27	3	0	0	0	0.0085732	2	17841	17841;17893		81.613	66.775	1	957100			56556	5333	32416	32417	69165;69166	69165		643			0.07780692707524395
VYMIRVYLL	9	Oxidation (M)	_VYM(Oxidation (M))IRVYLL_		VYM(1)IRVYLL		VYM(82)IRVYLL	0	0	1		ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.3389892578125	2	593.338652	1184.66275	0.46128	0.0002737	-0.23262	-0.00013802	0.22866	0.00013568	593.338490172406	70.404	0.81139	70.465	69.988	70.8	0.060783					67	25	3	0	0	0	0.0085732	2	17803	17803;17858		81.613	66.775	1	883430			56557	5333	32416	32417	69167;69168	69167		643			0.07780692707524395
VYMIRVYLL	9	Oxidation (M)	_VYM(Oxidation (M))IRVYLL_		VYM(1)IRVYLL		VYM(82)IRVYLL	0	0	1		ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.3384399414062	2	593.338652	1184.66275	0.44955	0.00026673	-0.26102	-0.00015487	0.18853	0.00011186	593.3384772162276	70.447	0.94984	70.422	69.962	70.912	-0.024864					77	29	4	0	0	0	0.0085732	2	17836	17836;17888		81.613	66.775	1	815070			56558	5333	32416	32417	69169;69170	69169		643			0.07780692707524395
VYMIVGVSW	9	Unmodified	_VYMIVGVSW_					0	0	0			REV__nc|ENSG00000105287|Q9BZL6-2|PRKD2	REV__nc|ENSG00000105287|Q9BZL6-2|PRKD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3029174804688	2	527.275521	1052.53649	0.50576	0.00026668	-2.3128	-0.0012195	-1.8071	-0.00095283	527.2725692479997	67.979	0.24335	68.057	67.925	68.169	0.078041					10	8	2	0	0	0	0.23783	1	17092	17092		18.135	3.5533	1	81901	+		56559	14448	32417	32418	69171	69171					0.012321862022645291
VYMKATDDLF	10	Unmodified	_VYMKATDDLF_					0	0	0			REV__ENSG00000140284|ENST00000267842|SLC27A2	REV__ENSG00000140284|ENST00000267842|SLC27A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.7916870117188	2	601.791732	1201.56891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.538	1	85.619	85.119	86.119	0.080887								0	0	0	0.3629	1	22466	22466		9.3831	0.63772	1		+		56560	16026	32418	32419	69172	69172					-0.0238107118541393
VYMLAASLL	9	Oxidation (M)	_VYM(Oxidation (M))LAASLL_		VYM(1)LAASLL		VYM(67)LAASLL	0	0	1		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7743835449219	2	498.775354	995.536154	0.5532	0.00027592	-2.0733	-0.0010341	-1.5201	-0.00075819	498.77431557784047	74.715	0.83948	74.684	74.27	75.109	-0.031487					53	29	2	0	0	0	0.017871	1	19151	19151		67.344	20.423	1	1086200			56561	4544	32419	32420	69173	69173		575			0.03820766482419913
VYMLFMFIF	9	Unmodified	_VYMLFMFIF_					0	0	0		CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant;nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2152099609375	3	404.206158	1209.59665	-0.33984	-0.00013736	-1.0457	-0.00042269	-1.3856	-0.00056005	404.2044664368811	29.673	0.20902	29.687	29.564	29.773	0.013474					10	6	2	0	0	0	0.25431	1	5298	5298		9.3831	1.7742	1	32608			56562	12750;85	32420	32421	69174	69174					0.00023160541127253964
VYMLFMFIF	9	Unmodified	_VYMLFMFIF_					0	0	0		CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant;nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	404.206158	1209.59665	0.10061	4.0668E-05	-6.5432	-0.0026448	-6.4426	-0.0026041	404.2035074338881	29.421	0.33323	29.421	29.3	29.633	0	-0.079038	-0.00040125	NaN	9.3831	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71829			56563	12750;85	32420	32421							0.00023160541127253964
VYMLFMFIF	9	Unmodified	_VYMLFMFIF_					0	0	0		CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A;nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B	CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant;nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	404.206158	1209.59665	-0.13587	-5.4918E-05	-6.0738	-0.002455	-6.2096	-0.00251	404.2037504008785	29.381	0.31525	29.393	29.244	29.56	0.012266	-0.10737	0.00016805	NaN	9.3831	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89306			56564	12750;85	32420	32421							0.00023160541127253964
VYMLSWCF	8	Unmodified	_VYMLSWCF_					0	0	0			REV__ENST00000591629.1_1_18:37115485-37380062:-|nuORF	REV__ENST00000591629.1_1_18:37115485-37380062:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.30322265625	2	524.735174	1047.4558	0.70665	0.0003708	0.098138	5.1497E-05	0.80479	0.0004223	524.7351431179766	40.097	0.53089	40.19	39.943	40.474	0.09267					37	18	3	0	0	0	0.3225	1	8553	8553		22.453	0	1	378450	+		56565	22566	32421	32422	69175	69175					-0.06603418112285908
VYMLSWCF	8	Unmodified	_VYMLSWCF_					0	0	0			REV__ENST00000591629.1_1_18:37115485-37380062:-|nuORF	REV__ENST00000591629.1_1_18:37115485-37380062:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7890014648438	2	524.735174	1047.4558	0.59025	0.00030973	-0.037697	-1.9781E-05	0.55255	0.00028994	524.73511819776	40.069	0.50294	40.169	39.894	40.397	0.099407					28	17	2	0	0	0	0.33995	1	8560	8560		10.183	0.83596	1	380210	+		56566	22566	32421	32422	69176	69176					-0.06603418112285908
VYMMVTTMLL	10	Unmodified	_VYMMVTTMLL_					0	0	0			REV__ENST00000505992.1_1_4:99806121-99806199:-|nuORF	REV__ENST00000505992.1_1_4:99806121-99806199:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.2929077148438	2	601.305106	1200.59566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.438	1	85.519	85.019	86.019	0.080887								0	0	0	0.33661	1	22435	22435		20.454	0	1		+		56567	21747	32422	32423	69177	69177					0.0033857810990411963
VYMNVMTRL	9	2 Oxidation (M)	_VYM(Oxidation (M))NVM(Oxidation (M))TRL_		VYM(1)NVM(1)TRL		VYM(220)NVM(220)TRL	0	0	2		ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.7862548828125	2	579.785927	1157.5573	0.37698	0.00021857	-0.46415	-0.00026911	-0.087166	-5.0537E-05	579.786086506237	36.188	1.566	36.188	35.719	37.285	0					198	56	6	0	0	0	8.7734E-17	6	7301	7256;7301;7343;7393;7438;7573		216.57	174.47	1	18370000			56568	1004	32423	32424	69178;69179;69180;69181;69182;69183	69179		121;122			-0.015175914803648993
VYMNVMTRL	9	2 Oxidation (M)	_VYM(Oxidation (M))NVM(Oxidation (M))TRL_		VYM(1)NVM(1)TRL		VYM(220)NVM(220)TRL	0	0	2		ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.7863159179688	2	579.785927	1157.5573	0.45218	0.00026217	-0.5155	-0.00029888	-0.06332	-3.6712E-05	579.7860378099056	36.077	1.6969	36.16	35.682	37.379	0.082359					198	61	5	0	0	0	8.7734E-17	6	7259	7214;7259;7311;7361;7404;7510		216.57	180.44	1	19559000			56569	1004	32423	32424	69184;69185;69186;69187;69188;69189	69185		121;122			-0.015175914803648993
VYMNVMTRL	9	2 Oxidation (M)	_VYM(Oxidation (M))NVM(Oxidation (M))TRL_		VYM(1)NVM(1)TRL		VYM(220)NVM(220)TRL	0	0	2		ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.7862548828125	2	579.785927	1157.5573	0.53281	0.00030892	-0.59636	-0.00034576	-0.063544	-3.6842E-05	579.7860266880416	36.036	1.5962	36.122	35.645	37.241	0.08625					189	57	5	0	0	0	8.7734E-17	5	7242	7201;7242;7292;7345;7393		216.57	178.41	1	19652000			56570	1004	32423	32424	69190;69191;69192;69193;69194	69191		121;122			-0.015175914803648993
VYMPASSYQSL	11	Oxidation (M)	_VYM(Oxidation (M))PASSYQSL_		VYM(1)PASSYQSL		VYM(92)PASSYQSL	0	0	1		nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2;ENST00000498780.5_1_2:201862166-201888732:-|nuORF	nc|ENSG00000155744|Q8IXS8|HYCC2	nc|ENSG00000155744|Q8IXS8|HYCC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	631.2926635742188	2	631.292096	1260.56964	0.35328	0.00022302	-1.0406	-0.00065691	-0.6873	-0.00043389	631.2922031806376	51.702	0.85156	51.702	51.271	52.123	0					68	31	5	0	0	0	0.0013351	1	12129	12129		92.201	71.62	1	744290			56571	5191	32424	32425	69195	69195		633			-0.050222765363514554
VYMPASSYQSL	11	Oxidation (M)	_VYM(Oxidation (M))PASSYQSL_		VYM(1)PASSYQSL		VYM(88)PASSYQSL	0	0	1		nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2;ENST00000498780.5_1_2:201862166-201888732:-|nuORF	nc|ENSG00000155744|Q8IXS8|HYCC2	nc|ENSG00000155744|Q8IXS8|HYCC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	631.2932739257812	2	631.292096	1260.56964	0.30009	0.00018944	-0.42363	-0.00026744	-0.12355	-7.7993E-05	631.2923290810832	51.73	0.89656	51.777	51.271	52.168	0.046577					61	32	4	0	0	0	0.0016102	1	12079	12079		88.364	58.523	1	718950			56572	5191	32424	32425	69196	69196		633			-0.050222765363514554
VYMPASSYQSL	11	Oxidation (M)	_VYM(Oxidation (M))PASSYQSL_		VYM(1)PASSYQSL		VYM(79)PASSYQSL	0	0	1		nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2;ENST00000498780.5_1_2:201862166-201888732:-|nuORF	nc|ENSG00000155744|Q8IXS8|HYCC2	nc|ENSG00000155744|Q8IXS8|HYCC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	631.2925415039062	2	631.292096	1260.56964	0.21872	0.00013808	-0.4676	-0.0002952	-0.24888	-0.00015712	631.2923911730716	51.85	0.64378	51.85	51.602	52.246	-0.00080872					66	23	4	0	0	0	0.00539	1	12115	12115		79.427	62.314	1	718610			56573	5191	32424	32425	69197	69197		633			-0.050222765363514554
VYMPASSYQSL	11	Oxidation (M)	_VYM(Oxidation (M))PASSYQSL_		VYM(1)PASSYQSL		VYM(55)PASSYQSL	0	0	1		nc|ENSG00000155744|Q8IXS8|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENSG00000155744|ENST00000681958|HYCC2;ENST00000498780.5_1_2:201862166-201888732:-|nuORF	nc|ENSG00000155744|Q8IXS8|HYCC2	nc|ENSG00000155744|Q8IXS8|HYCC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.83935546875	2	631.292096	1260.56964	0.40412	0.00025512	0.2641	0.00016673	0.66823	0.00042185	631.2921951955367	51.501	0.346	51.51	51.347	51.693	0.0095673					23	12	2	0	0	0	0.20309	1	12023	12023		55.249	43.008	1	599460			56574	5191	32424	32425	69198	69198		633			-0.050222765363514554
VYNALWYII	9	Unmodified	_VYNALWYII_					0	0	0			REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3112182617188	2	577.815867	1153.61718	0.14458	8.3542E-05	-2.6371	-0.0015238	-2.4925	-0.0014402	577.8139951864033	64.929	0.84682	64.918	64.441	65.288	-0.011337					59	30	2	0	0	0	0.23783	1	16198	16198		7.9102	0	1	463490	+		56575	21195	32425	32426	69199	69199					0.0465179051677751
VYNANINLF	9	Unmodified	_VYNANINLF_					0	0	0		nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1;ENST00000508588.5_1_4:88964466-88973152:+|nuORF;nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-5|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;nc|ENSG00000118762|Q13563-2|PKD2	nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000118762|Q13563-4|PKD2	nc|ENSG00000118762|Q13563-4|PKD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2796020507812	2	534.279649	1066.54475	0.49955	0.0002669	0.20586	0.00010999	0.70541	0.00037689	534.2797229146851	70.19	1.0676	70.19	69.895	70.963	0					137	38	6	0	0	0	4.6984E-11	3	17720	17720;17762;17809		187.93	116.8	1	6931500			56576	2843;2135	32426	32427	69200;69201;69202	69200					0.014134564432197294
VYNANINLF	9	Unmodified	_VYNANINLF_					0	0	0		nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1;ENST00000508588.5_1_4:88964466-88973152:+|nuORF;nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-5|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;nc|ENSG00000118762|Q13563-2|PKD2	nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000118762|Q13563-4|PKD2	nc|ENSG00000118762|Q13563-4|PKD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2798461914062	2	534.279649	1066.54475	0.3158	0.00016873	0.3512	0.00018764	0.667	0.00035636	534.2797960573282	70.113	1.1399	70.179	69.91	71.05	0.066048					128	40	5	0	0	0	2.0431E-11	4	17791	17699;17722;17747;17791		196.65	125.51	1	6722100			56577	2843;2135	32426	32427	69203;69204;69205;69206	69206					0.014134564432197294
VYNANINLF	9	Unmodified	_VYNANINLF_					0	0	0		nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1;ENST00000508588.5_1_4:88964466-88973152:+|nuORF;nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-5|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;nc|ENSG00000118762|Q13563-2|PKD2	nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000118762|Q13563-4|PKD2	nc|ENSG00000118762|Q13563-4|PKD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.27978515625	2	534.279649	1066.54475	0.49081	0.00026223	0.20376	0.00010886	0.69457	0.00037109	534.2797116763878	70.176	1.1142	70.154	69.913	71.027	-0.022087					124	39	5	0	0	0	4.6984E-11	3	17774	17726;17774;17818		187.93	116.8	1	7066200			56578	2843;2135	32426	32427	69207;69208;69209	69208					0.014134564432197294
VYNANVNLF	9	Unmodified	_VYNANVNLF_					0	0	0		nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442|PKD1L2	nc|ENSG00000166473|Q7Z442|PKD1L2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.272216796875	2	527.271824	1052.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.848	1	67.848	67.348	68.348	0								0	0	0	0.11822	1	17060	17060		42.095	0.13901	1				56579	12817	32427	32428	69210	69210					0.004931699261760514
VYNAVLELF	9	Unmodified	_VYNAVLELF_					0	0	0		nc|ENSG00000134242|Q9Y2R2-6|PTPN22;nc|ENSG00000134242|Q9Y2R2-2|PTPN22;ENST00000484147.5_1_1:114375712-114414257:-|nuORF;nc|ENSG00000134242|Q9Y2R2-4|PTPN22;nc|ENSG00000134242|Q9Y2R2|PTPN22;ENSG00000134242|ENST00000359785|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7844848632812	2	534.292225	1066.5699	0.62795	0.00033551	-0.17518	-9.3598E-05	0.45277	0.00024191	534.2918835703595	88.522	1.6948	88.522	87.765	89.46	0					145	82	4	0	0	0	0.051692	1	23454	23454		52.268	12.311	1	616370			56580	3762	32428	32429	69211	69211					0.03927511245797177
VYNAVLELF	9	Unmodified	_VYNAVLELF_					0	0	0		nc|ENSG00000134242|Q9Y2R2-6|PTPN22;nc|ENSG00000134242|Q9Y2R2-2|PTPN22;ENST00000484147.5_1_1:114375712-114414257:-|nuORF;nc|ENSG00000134242|Q9Y2R2-4|PTPN22;nc|ENSG00000134242|Q9Y2R2|PTPN22;ENSG00000134242|ENST00000359785|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7843017578125	2	534.292225	1066.5699	0.40105	0.00021428	0.062716	3.3508E-05	0.46377	0.00024779	534.291956154276	88.414	1.3041	88.503	88	89.304	0.089195					109	59	3	0	0	0	0.034444	2	23398	23398;23428		58.679	18.721	1	835410			56581	3762	32428	32429	69212;69213	69212					0.03927511245797177
VYNAVLELF	9	Unmodified	_VYNAVLELF_					0	0	0		nc|ENSG00000134242|Q9Y2R2-6|PTPN22;nc|ENSG00000134242|Q9Y2R2-2|PTPN22;ENST00000484147.5_1_1:114375712-114414257:-|nuORF;nc|ENSG00000134242|Q9Y2R2-4|PTPN22;nc|ENSG00000134242|Q9Y2R2|PTPN22;ENSG00000134242|ENST00000359785|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	nc|ENSG00000134242|Q9Y2R2-6|PTPN22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2924194335938	2	534.292225	1066.5699	0.5408	0.00028895	-0.093634	-5.0028E-05	0.44717	0.00023892	534.2919398708231	88.531	1.5524	88.528	87.713	89.265	-0.0028458					118	72	3	0	0	0	0.014888	3	23387	23387;23429;23440		71.922	18.721	1	746400			56582	3762	32428	32429	69214;69215;69216	69214					0.03927511245797177
VYNEAGVTF	9	Unmodified	_VYNEAGVTF_					0	0	0		nc|ENSG00000148672|P00367-2|GLUD1;nc|ENSG00000148672|P00367-3|GLUD1;ENSG00000148672|ENST00000277865|GLUD1	nc|ENSG00000148672|P00367-2|GLUD1	nc|ENSG00000148672|P00367-2|GLUD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7607727050781	2	500.242732	998.470912	0.68357	0.00034195	-0.2302	-0.00011515	0.45338	0.0002268	500.24243677833755	54.544	0.54249	54.544	54.322	54.864	0					45	19	3	0	0	0	0.015924	1	13013	13013		70.332	28.492	1	847740			56583	4823	32429	32430	69217	69217					-0.028385117190964593
VYNEAGVTF	9	Unmodified	_VYNEAGVTF_					0	0	0		nc|ENSG00000148672|P00367-2|GLUD1;nc|ENSG00000148672|P00367-3|GLUD1;ENSG00000148672|ENST00000277865|GLUD1	nc|ENSG00000148672|P00367-2|GLUD1	nc|ENSG00000148672|P00367-2|GLUD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7607727050781	2	500.242732	998.470912	0.63136	0.00031583	-0.3256	-0.00016288	0.30576	0.00015296	500.24241444045055	54.49	0.56181	54.553	54.272	54.834	0.063202					51	20	3	0	0	0	0.020233	1	13000	13000		63.961	20.102	1	827320			56584	4823	32429	32430	69218	69218					-0.028385117190964593
VYNEAGVTF	9	Unmodified	_VYNEAGVTF_					0	0	0		nc|ENSG00000148672|P00367-2|GLUD1;nc|ENSG00000148672|P00367-3|GLUD1;ENSG00000148672|ENST00000277865|GLUD1	nc|ENSG00000148672|P00367-2|GLUD1	nc|ENSG00000148672|P00367-2|GLUD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.2428283691406	2	500.242732	998.470912	0.65857	0.00032944	-0.58816	-0.00029422	0.070409	3.5222E-05	500.24232377631455	54.723	0.59114	54.707	54.415	55.006	-0.015923					44	20	3	0	0	0	9.2305E-05	2	13001	13001;13063		142.08	73.999	1	852870			56585	4823	32429	32430	69219;69220	69219					-0.028385117190964593
VYNENLVHM	9	Oxidation (M)	_VYNENLVHM(Oxidation (M))_		VYNENLVHM(1)		VYNENLVHM(190)	0	0	1		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.7661743164062	2	567.766049	1133.51754	-0.40083	-0.00022758	1.2715	0.00072191	0.87067	0.00049433	567.7668566967282	34.35	0.99429	34.416	34.12	35.114	0.06636					65	35	3	0	0	0	5.5754E-11	3	6768	6721;6768;6819		185.05	141.19	1	1111700			56586	2750	32430	32431	69221;69222;69223	69222		348			-0.04387395159460539
VYNENLVHM	9	Oxidation (M)	_VYNENLVHM(Oxidation (M))_		VYNENLVHM(1)		VYNENLVHM(200)	0	0	1		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.7661743164062	2	567.766049	1133.51754	-0.064584	-3.6669E-05	0.38784	0.0002202	0.32326	0.00018354	567.7661501259515	34.303	0.85955	34.37	33.967	34.826	0.0667					79	30	4	0	0	0	1.0985E-11	3	6752	6702;6752;6800		199.75	155.89	1	1060800			56587	2750	32430	32431	69224;69225;69226	69225		348			-0.04387395159460539
VYNENLVHMI	10	Oxidation (M)	_VYNENLVHM(Oxidation (M))I_		VYNENLVHM(1)I		VYNENLVHM(190)I	0	0	1		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.3080444335938	2	624.308081	1246.60161	0.57826	0.00036101	0.021073	1.3156E-05	0.59933	0.00037417	624.308186857578	46.844	1.2314	46.844	46.54	47.771	0					143	43	5	0	0	0	1.3455E-13	1	10547	10547		187.3	131.79	1	17549000			56588	2750	32431	32432	69227	69227		348			-0.011828640625481057
VYNENLVHMI	10	Oxidation (M)	_VYNENLVHM(Oxidation (M))I_		VYNENLVHM(1)I		VYNENLVHM(190)I	0	0	1		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.3082275390625	2	624.308081	1246.60161	0.20192	0.00012606	0.30791	0.00019223	0.50984	0.00031829	624.3084293899843	46.731	1.3674	46.784	46.44	47.808	0.052574					160	50	6	0	0	0	1.3455E-13	1	10499	10499		187.3	123.34	1	15595000			56589	2750	32431	32432	69228	69228		348			-0.011828640625481057
VYNENLVHMI	10	Oxidation (M)	_VYNENLVHM(Oxidation (M))I_		VYNENLVHM(1)I		VYNENLVHM(190)I	0	0	1		ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENST00000425064.1_1_1:100858662-100858893:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3082885742188	2	624.308081	1246.60161	0.37895	0.00023658	0.26814	0.0001674	0.64709	0.00040398	624.308348205235	46.778	1.2405	46.832	46.516	47.757	0.054371					146	44	5	0	0	0	1.3455E-13	5	10505	10505;10553;10598;10692;10741		187.3	131.79	1	15579000			56590	2750	32431	32432	69229;69230;69231;69232;69233	69229		348			-0.011828640625481057
VYNHRFHKI	9	Unmodified	_VYNHRFHKI_					0	0	0		ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.2243957519531	3	405.22448	1212.65161	-0.12854	-5.2088E-05	0.060161	2.4379E-05	-0.068381	-2.771E-05	405.2243387817734	17.501	0.64969	17.501	17.217	17.867	0					53	22	4	0	0	0	0.24311	1	1642	1642		16.149	9.9147	1	127000			56591	2555	32432	32433	69234	69234					0.053790514482670915
VYNHRFHKI	9	Unmodified	_VYNHRFHKI_					0	0	0		ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.2245178222656	3	405.22448	1212.65161	-0.30922	-0.0001253	0.32618	0.00013218	0.016963	6.8739E-06	405.22454375862344	17.722	0.48483	17.605	17.355	17.84	-0.11739					36	16	3	0	0	0	0.25112	1	1719	1719		16.149	4.6544	1	146090			56592	2555	32432	32433	69235	69235					0.053790514482670915
VYNHRFHKI	9	Unmodified	_VYNHRFHKI_					0	0	0		ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	ENST00000485450.5_1_3:49315728-49349110:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2467041015625	3	405.22448	1212.65161	-0.17455	-7.0733E-05	-0.43961	-0.00017814	-0.61416	-0.00024887	405.22437047731864	17.673	0.56713	17.613	17.384	17.951	-0.060429					51	19	4	0	0	0	0.25066	1	1686	1686		16.149	10.366	1	106400			56593	2555	32432	32433	69236	69236					0.053790514482670915
VYNIHLAVK	9	Unmodified	_VYNIHLAVK_					0	0	0		ENST00000462503.1_1_8:34180515-34180734:-|nuORF	ENST00000462503.1_1_8:34180515-34180734:-|nuORF	ENST00000462503.1_1_8:34180515-34180734:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8139038085938	2	528.813659	1055.61277	0.20083	0.0001062	0.1613	8.5297E-05	0.36213	0.0001915	528.8139213757127	111.93	1.1407	111.91	111.62	112.76	-0.015617					187	136	2	0	0	0	0.33276	1	29191	29191		3.9444	0.66309	1	105350			56594	10758	32433	32434	69237	69237					0.08718326093890028
VYNIHLAVK	9	Unmodified	_VYNIHLAVK_					0	0	0		ENST00000462503.1_1_8:34180515-34180734:-|nuORF	ENST00000462503.1_1_8:34180515-34180734:-|nuORF	ENST00000462503.1_1_8:34180515-34180734:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8151245117188	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.88	1	116.85	116.35	117.35	-0.022781								0	0	0	0.264	1	30266	30266		1.8442	0	1				56595	10758	32433	32434	69238	69238					0.08718326093890028
VYNIHLAVK	9	Unmodified	_VYNIHLAVK_					0	0	0		ENST00000462503.1_1_8:34180515-34180734:-|nuORF	ENST00000462503.1_1_8:34180515-34180734:-|nuORF	ENST00000462503.1_1_8:34180515-34180734:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8150024414062	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.92	1	117.9	117.4	118.4	-0.024147								0	0	0	0.264	1	30505	30505		1.8442	0	1				56596	10758	32433	32434	69239	69239					0.08718326093890028
VYNIHLAVK	9	Unmodified	_VYNIHLAVK_					0	0	0		ENST00000462503.1_1_8:34180515-34180734:-|nuORF	ENST00000462503.1_1_8:34180515-34180734:-|nuORF	ENST00000462503.1_1_8:34180515-34180734:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8134765625	2	528.813659	1055.61277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.35	1	118.38	117.88	118.88	0.026253								0	0	0	0.264	1	30648	30648		1.8442	0	1				56597	10758	32433	32434	69240	69240					0.08718326093890028
VYNKVHITL	9	Unmodified	_VYNKVHITL_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.818115234375	2	543.818941	1085.62333	0.11714	6.3703E-05	-0.23985	-0.00013044	-0.12271	-6.6733E-05	543.8185804913638	39.29	0.92815	39.29	39.04	39.968	0					89	33	4	0	0	0	4.3881E-05	2	8253	8253;8298		149.91	83.457	1	1466200			56598	6049	32434	32435	69241;69242	69241					0.08394308748324875
VYNKVHITL	9	Unmodified	_VYNKVHITL_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3202514648438	2	543.818941	1085.62333	0.39224	0.00021331	-0.70282	-0.0003822	-0.31057	-0.00016889	543.8183446093609	39.189	0.83528	39.282	39.052	39.887	0.09267					72	29	4	0	0	0	4.3881E-05	2	8228	8228;8276		149.91	70.967	1	1608900			56599	6049	32434	32435	69243;69244	69243					0.08394308748324875
VYNKVHITL	9	Unmodified	_VYNKVHITL_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.8185424804688	2	543.818941	1085.62333	0.67654	0.00036791	-0.9416	-0.00051206	-0.26506	-0.00014414	543.8182008381275	39.157	0.82718	39.256	39.017	39.844	0.099407					67	29	3	0	0	0	4.3828E-07	2	8252	8206;8252		163.04	87.275	1	1663800			56600	6049	32434	32435	69245;69246	69246					0.08394308748324875
VYNLLHNLL	9	Unmodified	_VYNLLHNLL_					0	0	0			REV__SF3B1|p.S1207L|1|0.18|ENSG00000115524|chr2:197393108-197393108|G/A|missense_variant	REV__SF3B1|p.S1207L|1|0.18|ENSG00000115524|chr2:197393108-197393108|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2792358398438	2	549.818941	1097.62333	0.36037	0.00019814	0.34203	0.00018806	0.70241	0.0003862	549.8188238313736	73.596	0.27689	73.649	73.494	73.771	0.052368					17	9	2	0	0	0	0.24913	1	18836	18836		12.532	5.2423	1	94284	+		56601	23304	32435	32436	69247	69247					0.07842308748331561
VYNLSDTHLF	10	Unmodified	_VYNLSDTHLF_					0	0	0		LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000185896|ENST00000332556|LAMP1;ENST00000472564.1_1_13:113960786-113974926:+|nuORF	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant	LAMP1|p.K152Nfs*12|1|0.38|ENSG00000185896|chr13:113310756-113310756|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.8009033203125	2	604.800946	1207.58734	0.50092	0.00030296	-0.50044	-0.00030266	0.00048742	2.9479E-07	604.8005198357966	63.041	0.72812	63.041	62.661	63.389	0					47	26	2	0	0	0	0.36786	1	15557	15557		9.3831	1.2276	1	429870			56602	7565	32436	32437	69248	69248					-0.008151932192049571
VYNLTQEFF	9	Unmodified	_VYNLTQEFF_					0	0	0		nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.784912109375	2	580.784764	1159.55498	0.43208	0.00025095	-0.22309	-0.00012957	0.20899	0.00012138	580.7847073812943	79.196	0.69269	79.196	78.973	79.666	0					77	28	4	0	0	0	0.0010463	3	20559	20516;20559;20610		122.18	54.098	1	661200			56603	1331	32437	32438	69249;69250;69251	69250					-0.018419806222027546
VYNLTQEFF	9	Unmodified	_VYNLTQEFF_					0	0	0		nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.7848510742188	2	580.784764	1159.55498	0.43068	0.00025013	-0.13095	-7.6054E-05	0.29973	0.00017408	580.7845785265589	79.2	0.70937	79.261	78.986	79.695	0.061409					85	31	4	0	0	0	0.00078391	4	20524	20480;20524;20573;20588		125.53	61.293	1	797810			56604	1331	32437	32438	69252;69253;69254;69255	69253					-0.018419806222027546
VYNLTQEFF	9	Unmodified	_VYNLTQEFF_					0	0	0		nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX;ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	nc|ENSG00000088826|Q9NWM0-2|SMOX	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.7849731445312	2	580.784764	1159.55498	0.48945	0.00028427	-0.19657	-0.00011417	0.29288	0.0001701	580.7846096930931	79.306	0.74377	79.277	78.983	79.727	-0.028931					76	27	4	0	0	0	0.0010463	3	20517	20517;20565;20612		122.18	57.943	1	687130			56605	1331	32437	32438	69256;69257;69258	69256					-0.018419806222027546
VYNMYMHLI	9	2 Oxidation (M)	_VYNM(Oxidation (M))YM(Oxidation (M))HLI_		VYNM(1)YM(1)HLI		VYNM(130)YM(130)HLI	0	0	2		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35148995-35166226:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.2800903320312	2	608.280477	1214.5464	0.60638	0.00036885	-0.96214	-0.00058525	-0.35576	-0.0002164	608.279779002576	48.343	0.64994	48.343	48.044	48.694	0					61	22	4	0	0	0	0.00033206	1	11055	11055		131.3	110.84	1	942670			56606	511	32438	32439	69259	69259		56;57			-0.052289938546664416
VYNMYMHLI	9	2 Oxidation (M)	_VYNM(Oxidation (M))YM(Oxidation (M))HLI_		VYNM(1)YM(1)HLI		VYNM(120)YM(120)HLI	0	0	2		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35148995-35166226:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.7820434570312	2	608.280477	1214.5464	0.80085	0.00048714	-1.01	-0.00061438	-0.20919	-0.00012724	608.2798435802358	48.327	0.7486	48.375	48.022	48.771	0.04752					76	27	4	0	0	0	0.0014051	1	11055	11055		117.6	90.715	1	1103600			56607	511	32438	32439	69260	69260		56;57			-0.052289938546664416
VYNMYMHLI	9	2 Oxidation (M)	_VYNM(Oxidation (M))YM(Oxidation (M))HLI_		VYNM(1)YM(1)HLI		VYNM(130)YM(130)HLI	0	0	2		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35148995-35166226:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.280029296875	2	608.280477	1214.5464	0.53679	0.00032652	-0.67787	-0.00041234	-0.14108	-8.5816E-05	608.2798805249292	48.257	0.68507	48.3	47.987	48.672	0.04332					65	25	3	0	0	0	0.00033206	2	10999	10999;11050		131.3	113.16	1	1107400			56608	511	32438	32439	69261;69262	69261		56;57			-0.052289938546664416
VYNPMPFEL	9	Oxidation (M)	_VYNPM(Oxidation (M))PFEL_		VYNPM(1)PFEL		VYNPM(110)PFEL	0	0	1		ENST00000521667.5_1_8:140743306-141301208:-|nuORF;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9	ENST00000521667.5_1_8:140743306-141301208:-|nuORF	ENST00000521667.5_1_8:140743306-141301208:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.26806640625	2	563.267893	1124.52123	0.32314	0.00018201	-0.0021464	-1.209E-06	0.32099	0.0001808	563.2679378309482	68.911	1.0811	68.911	68.566	69.647	0					124	38	5	0	0	0	0.0023784	2	17391	17343;17391		107.19	65.474	1	3588900			56609	6192	32439	32440	69263;69264	69264		728			-0.03604725385616803
VYNPMPFEL	9	Oxidation (M)	_VYNPM(Oxidation (M))PFEL_		VYNPM(1)PFEL		VYNPM(100)PFEL	0	0	1		ENST00000521667.5_1_8:140743306-141301208:-|nuORF;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9	ENST00000521667.5_1_8:140743306-141301208:-|nuORF	ENST00000521667.5_1_8:140743306-141301208:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.2681274414062	2	563.267893	1124.52123	0.45673	0.00025726	-0.12959	-7.2995E-05	0.32713	0.00018426	563.2678279367793	68.858	1.08	68.93	68.59	69.67	0.071938					125	38	4	0	0	0	0.0028626	3	17366	17317;17366;17416		103.35	67.226	1	3555000			56610	6192	32439	32440	69265;69266;69267	69266		728			-0.03604725385616803
VYNPMPFEL	9	Oxidation (M)	_VYNPM(Oxidation (M))PFEL_		VYNPM(1)PFEL		VYNPM(110)PFEL	0	0	1		ENST00000521667.5_1_8:140743306-141301208:-|nuORF;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9	ENST00000521667.5_1_8:140743306-141301208:-|nuORF	ENST00000521667.5_1_8:140743306-141301208:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.2681274414062	2	563.267893	1124.52123	0.27152	0.00015294	0.078853	4.4415E-05	0.35038	0.00019736	563.2679414383124	68.904	1.0221	68.885	68.572	69.594	-0.01915					113	36	5	0	0	0	0.0016361	1	17342	17342		114.65	78.522	1	3915300			56611	6192	32439	32440	69268	69268		728			-0.03604725385616803
VYNPTPNSL	9	Unmodified	_VYNPTPNSL_					0	0	0		nc|ENSG00000111799|Q99715-2|COL12A1;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.2818908691406	2	502.756007	1003.49746	0.20182	0.00010146	-0.98422	-0.00049482	-0.7824	-0.00039336	502.75513748886414	46.51	0.24524	46.51	46.402	46.648	0					11	8	2	0	0	0	0.15943	1	10509	10509		39.95	25.111	1	215750			56612	2389	32440	32441	69269	69269					-0.0041482282778133595
VYNPTPNSL	9	Unmodified	_VYNPTPNSL_					0	0	0		nc|ENSG00000111799|Q99715-2|COL12A1;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2817687988281	2	502.756007	1003.49746	0.43972	0.00022107	0.13293	6.6832E-05	0.57265	0.00028791	502.75601746946285	46.51	0.21958	46.562	46.358	46.578	0.052574					9	7	2	0	0	0	0.22061	1	10459	10459		24.021	13.947	1	215740			56613	2389	32440	32441	69270	69270					-0.0041482282778133595
VYNPTPNSL	9	Unmodified	_VYNPTPNSL_					0	0	0		nc|ENSG00000111799|Q99715-2|COL12A1;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-2|COL12A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.28167724609375	2	502.756007	1003.49746	0.11167	5.6142E-05	0.14624	7.3525E-05	0.25791	0.00012967	502.7558468826869	46.534	0.24755	46.588	46.383	46.631	0.054371					13	8	2	0	0	0	0.23235	1	10454	10454		21.537	3.402	1	150590			56614	2389	32440	32441	69271	69271					-0.0041482282778133595
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3029174804688	2	557.302593	1112.59063	0.53298	0.00029703	-0.34884	-0.00019441	0.18414	0.00010262	557.3026645673297	84.772	2.9998	84.772	84.346	87.346	0					310	116	5	0	0	0	7.6375E-05	8	22207	22161;22207;22248;22298;22345;22542;22605;22688		144.66	112.35	1	22222000			56615	685	32441	32442	69272;69273;69274;69275;69276;69277;69278;69279	69273					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.304443359375	2	557.302593	1112.59063	0.45665	0.00025449	1.0519	0.00058621	1.5085	0.0008407	557.3035786667409	88.073	0.90764	88.073	87.765	88.672	0					76	47	2	0	0	0	0.072844	3	23340	23259;23336;23340		44.407	27.465	1	120300			56616	685	32441	32442	69280;69281;69282	69282					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2846069335938	2	557.302593	1112.59063	0.41612	0.0002319	0.82995	0.00046254	1.2461	0.00069444	557.8040175655643	89.329	0.51617	89.329	88.943	89.46	0					28	23	2	0	0	0	0.11517	1	23563	23563		36.044	22.536	1	54646			56617	685	32441	32442	69283	69283					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3043212890625	2	557.302593	1112.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.126	1	87.126	86.626	87.626	0								0	0	0	0.10826	1	22960	22960		44.407	26.261	1				56618	685	32441	32442	69284	69284					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3023071289062	2	557.302593	1112.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.25	1	87.25	86.75	87.75	0								0	0	0	0.17683	1	22998	22998		28.487	10.352	1				56619	685	32441	32442	69285	69285					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.30419921875	2	557.302593	1112.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.279	1	87.279	86.779	87.779	0								0	0	0	0.051692	1	23007	23007		60.39	40.951	1				56620	685	32441	32442	69286	69286					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.30419921875	2	557.302593	1112.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.468	1	87.468	86.968	87.968	0								0	0	0	0.10826	1	23065	23065		44.407	27.465	1				56621	685	32441	32442	69287	69287					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3045043945312	2	557.302593	1112.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.709	1	87.709	87.209	88.209	0								0	0	0	0.19804	1	23139	23139		23.148	11.508	1				56622	685	32441	32442	69288	69288					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2838134765625	2	557.302593	1112.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.912	1	88.912	88.412	89.412	0								0	0	0	0.19804	1	23506	23506		23.148	6.2061	1				56623	685	32441	32442	69289	69289					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8309326171875	2	557.302593	1112.59063	0.33431	0.00018631	0.52161	0.00029069	0.85592	0.00047701	557.8035880607172	90.724	0.27475	90.724	90.648	90.923	0					35	23	2	0	0	0	0.21905	1	24089	24089		16.942	0	1	112500			56624	685	32441	32442	69290	69290					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3027954101562	2	557.302593	1112.59063	0.55975	0.00031195	-0.39332	-0.0002192	0.16643	9.2754E-05	557.3027359973751	84.653	2.9744	84.734	84.369	87.344	0.080887					318	117	5	0	0	0	7.6375E-05	12	22166	22117;22166;22214;22262;22307;22508;22559;22582;22670;22697;22927;22977		144.66	112.35	1	25065000			56625	685	32441	32442	69291;69292;69293;69294;69295;69296;69297;69298;69299;69300;69301;69302	69292					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.304931640625	2	557.302593	1112.59063	0.39204	0.00021848	0.86791	0.00048369	1.2599	0.00070217	557.3034075401248	87.447	0.49297	87.534	87.35	87.843	0.087097					37	25	2	0	0	0	0.072844	3	23075	23026;23053;23075		44.407	27.465	1	123320			56626	685	32441	32442	69303;69304;69305	69305					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3046875	2	557.302593	1112.59063	0.39679	0.00022113	2.075	0.0011564	2.4718	0.0013776	557.3043522126416	88.11	0.59315	88.199	88	88.593	0.089203					47	28	2	0	0	0	0.11517	1	23280	23280		36.044	19.102	1	103790			56627	685	32441	32442	69306	69306					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3040771484375	2	557.302593	1112.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.974	1	88.063	87.563	88.563	0.089195								0	0	0	0.14428	1	23213	23213		36.044	22.536	1				56628	685	32441	32442	69307	69307					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.8311157226562	2	557.302593	1112.59063	0.36347	0.00020256	0.50844	0.00028336	0.87191	0.00048592	557.3036577186457	90.659	0.25648	90.75	90.581	90.838	0.090675					29	19	2	0	0	0	0.25066	1	24008	24008		11.64	0	1	103070			56629	685	32441	32442	69308	69308					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3027954101562	2	557.302593	1112.59063	0.46604	0.00025973	-0.26536	-0.00014789	0.20068	0.00011184	557.3027705044407	84.778	3.4301	84.765	84.356	87.786	-0.01284					339	141	6	0	0	0	7.6375E-05	12	22192	22145;22192;22240;22285;22330;22572;22682;22734;22790;22948;23065;23107		144.66	112.35	1	24530000			56630	685	32441	32442	69309;69310;69311;69312;69313;69314;69315;69316;69317;69318;69319;69320	69310					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2850952148438	2	557.302593	1112.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.054	1	89.054	88.554	89.554	-0.00080872								0	0	0	0.17683	1	23538	23538		28.487	11.545	1				56631	685	32441	32442	69321	69321					0.03884101625453695
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF;nc|ENSG00000203668|Q9H1Y3-2|OPN3	ENSG00000054277|ENST00000366554|OPN3	ENSG00000054277|ENST00000366554|OPN3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	557.302593	1112.59063	0.34978	0.00019493	1.1867	0.00066137	1.5365	0.0008563	557.3035646320786	89.251	0.32356	89.25	89.078	89.402	-0.00080872	-0.039365	0.00029024	NaN	36.044	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107790			56632	685	32441	32442							0.03884101625453695
VYNPYAALSI	10	Unmodified	_VYNPYAALSI_					0	0	0		nc|ENSG00000101452|Q9H5Z1-2|DHX35;ENSG00000101452|ENST00000252011|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	nc|ENSG00000101452|Q9H5Z1-2|DHX35	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7958374023438	2	555.795132	1109.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.004	1	74.004	73.504	74.504	0								0	0	0	0.09339	1	18943	18943		55.503	32.845	1				56633	1701	32442	32443	69322	69322					0.025306097574684827
VYNQIKEFI	9	Unmodified	_VYNQIKEFI_					0	0	0		ENSG00000144036|ENST00000272427|EXOC6B;nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	ENSG00000144036|ENST00000272427|EXOC6B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.7881469726562	2	577.316232	1152.61791	0.88514	0.000511	-0.34828	-0.00020107	0.53686	0.00030994	577.3160008970156	56.654	0.46042	56.635	56.483	56.944	-0.019081					25	16	2	0	0	0	0.20381	1	13642	13642		29.841	4.4413	1	520940			56634	4560	32443	32444	69323	69323					0.04770585165852026
VYNQPGHQF	9	Unmodified	_VYNQPGHQF_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7928466796875	2	545.259248	1088.50394	0.62793	0.00034238	-0.72301	-0.00039423	-0.09508	-5.1843E-05	545.2588336377804	70.379	0.6168	70.44	70.127	70.744	0.060783					37	21	2	0	0	0	0.21905	1	17770	17770		16.942	2.3606	1	411520			56635	8391	32444	32445	69324	69324					-0.03676884876381337
VYNQPGHQF	9	Unmodified	_VYNQPGHQF_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2711791992188	2	545.259248	1088.50394	0.66043	0.00036011	-0.58527	-0.00031913	0.07516	4.0982E-05	545.25899418689	70.447	0.6961	70.422	70.16	70.856	-0.024872					39	24	2	0	0	0	0.19839	1	17791	17791		21.747	0	1	659260			56636	8391	32444	32445	69325	69325					-0.03676884876381337
VYNRLSLLL	9	Unmodified	_VYNRLSLLL_					0	0	0		ENST00000528145.5_1_11:46666897-46677909:+|nuORF;ENST00000534610.5_1_11:46665841-46681092:+|nuORF;nc|ENSG00000175224|O75143-4|ATG13;nc|ENSG00000175224|O75143-3|ATG13;nc|ENSG00000175224|O75143-2|ATG13;nc|ENSG00000175224|O75143|ATG13;ENSG00000175224|ENST00000683050|ATG13	ENST00000528145.5_1_11:46666897-46677909:+|nuORF	ENST00000528145.5_1_11:46666897-46677909:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2661743164062	2	545.834591	1089.65463	0.63585	0.00034707	-0.067957	-3.7093E-05	0.5679	0.00030998	545.8342602445069	64.609	0.73344	64.609	64.342	65.076	0					52	26	3	0	0	0	0.20881	1	16054	16054		27.629	9.4825	1	735690			56637	6850	32445	32446	69326	69326					0.11338881782421595
VYNRLSLLL	9	Unmodified	_VYNRLSLLL_					0	0	0		ENST00000528145.5_1_11:46666897-46677909:+|nuORF;ENST00000534610.5_1_11:46665841-46681092:+|nuORF;nc|ENSG00000175224|O75143-4|ATG13;nc|ENSG00000175224|O75143-3|ATG13;nc|ENSG00000175224|O75143-2|ATG13;nc|ENSG00000175224|O75143|ATG13;ENSG00000175224|ENST00000683050|ATG13	ENST00000528145.5_1_11:46666897-46677909:+|nuORF	ENST00000528145.5_1_11:46666897-46677909:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.834716796875	2	545.834591	1089.65463	0.72553	0.00039602	-0.11733	-6.4044E-05	0.6082	0.00033197	545.834214108785	64.633	0.60957	64.623	64.364	64.974	-0.0095291					42	21	3	0	0	0	0.11397	1	16078	16078		49.933	6.1606	1	577350			56638	6850	32445	32446	69327	69327					0.11338881782421595
VYNSEYYHF	9	Unmodified	_VYNSEYYHF_					0	0	0		ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.2643432617188	2	611.264196	1220.51384	0.40884	0.00024991	-0.058824	-3.5957E-05	0.35002	0.00021395	611.2640335578826	48.873	1.4188	48.873	48.606	50.025	0					117	51	4	0	0	0	1.7377E-16	3	11187	11187;11236;11288		206.75	164.91	1	5462300			56639	2448	32446	32447	69328;69329;69330	69328					-0.08759741661674525
VYNSEYYHF	9	Unmodified	_VYNSEYYHF_					0	0	0		ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.2642822265625	2	611.264196	1220.51384	0.39222	0.00023975	-0.042816	-2.6172E-05	0.3494	0.00021358	611.2640515135729	48.896	1.2797	48.941	48.571	49.85	0.044891					124	46	4	0	0	0	4.8523E-24	4	11219	11170;11219;11270;11324		240.48	200.54	1	4730600			56640	2448	32446	32447	69331;69332;69333;69334	69332					-0.08759741661674525
VYNSEYYHF	9	Unmodified	_VYNSEYYHF_					0	0	0		ENST00000487673.5_1_6:43111066-43128616:+|nuORF;nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	ENST00000487673.5_1_6:43111066-43128616:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.2643432617188	2	611.264196	1220.51384	0.24046	0.00014699	0.054543	3.334E-05	0.295	0.00018033	611.264116415378	48.731	1.3658	48.763	48.447	49.813	0.032043					117	49	4	0	0	0	1.7377E-16	3	11175	11125;11175;11223		206.75	180.48	1	4212200			56641	2448	32446	32447	69335;69336;69337	69336					-0.08759741661674525
VYNTRHVCGF	10	Unmodified	_VYNTRHVCGF_					0	0	0		ENSG00000164849|ENST00000444847|GPR146	ENSG00000164849|ENST00000444847|GPR146	ENSG00000164849|ENST00000444847|GPR146	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.8103637695312	2	598.287482	1194.56041	0.44572	0.00026667	-2.4994	-0.0014954	-2.0537	-0.0012287	598.2859180778233	67.328	0.51656	67.328	67.106	67.623	0					26	17	2	0	0	0	0.31323	1	16868	16868		15.248	1.3424	1	295370			56642	5884	32447	32448	69338	69338					-0.029085803113730435
VYNYNHLMPT	10	Unmodified	_VYNYNHLMPT_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.2332458496094	3	417.865741	1250.57539	0.031375	1.311E-05	1.4545	0.00060777	1.4858	0.00062088	417.8663828596557	33.476	0.52036	33.476	33.259	33.78	0					41	18	3	0	0	0	0.3183	1	6509	6509		8.4443	1.3426	1	305760			56643	3568	32448	32449	69339	69339					-0.03987133234045359
VYPADVVLF	9	Unmodified	_VYPADVVLF_					0	0	0		nc|ENSG00000130717|Q9HA47-2|UCK1;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1;ENSG00000143179|ENST00000367879|UCK2	nc|ENSG00000130717|Q9HA47-2|UCK1	nc|ENSG00000130717|Q9HA47-2|UCK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.7816467285156	2	511.781493	1021.54843	0.332	0.00016991	0.040585	2.0771E-05	0.37259	0.00019068	511.7814051481262	81.823	1.251	81.823	81.338	82.589	0					133	49	4	0	0	0	0.0030686	4	21337	21337;21383;21445;21532		101.72	57.315	1	1402500			56644	3503	32449	32450	69340;69341;69342;69343	69340					0.038521262170888804
VYPADVVLF	9	Unmodified	_VYPADVVLF_					0	0	0		nc|ENSG00000130717|Q9HA47-2|UCK1;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1;ENSG00000143179|ENST00000367879|UCK2	nc|ENSG00000130717|Q9HA47-2|UCK1	nc|ENSG00000130717|Q9HA47-2|UCK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.7815246582031	2	511.781493	1021.54843	0.071978	3.6837E-05	0.28353	0.00014511	0.35551	0.00018194	511.7815222578137	81.763	1.2411	81.832	81.382	82.623	0.068993					141	53	4	0	0	0	0.0030686	5	21322	21227;21322;21369;21460;21503		101.72	57.315	1	1573400			56645	3503	32449	32450	69344;69345;69346;69347;69348	69345					0.038521262170888804
VYPADVVLF	9	Unmodified	_VYPADVVLF_					0	0	0		nc|ENSG00000130717|Q9HA47-2|UCK1;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1;ENSG00000143179|ENST00000367879|UCK2	nc|ENSG00000130717|Q9HA47-2|UCK1	nc|ENSG00000130717|Q9HA47-2|UCK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.7816162109375	2	511.781493	1021.54843	0.2748	0.00014064	0.057184	2.9266E-05	0.33199	0.0001699	511.7814330492156	81.864	1.1749	81.84	81.418	82.593	-0.02404					135	48	4	0	0	0	0.0016131	3	21334	21334;21381;21442		114.94	70.537	1	1563400			56646	3503	32449	32450	69349;69350;69351	69349					0.038521262170888804
VYPAGFVYI	9	Unmodified	_VYPAGFVYI_					0	0	0		ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF;nc|ENSG00000214160|Q92685-2|ALG3;ENSG00000214160|ENST00000397676|ALG3	ENST00000461415.5_1_3:183962900-183966669:-|nuORF	ENST00000461415.5_1_3:183962900-183966669:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.295166015625	2	514.776211	1027.53787	0.70234	0.00036155	1.2028	0.00061915	1.9051	0.0009807	514.776356245532	78.337	1.2394	78.337	77.902	79.142	0					124	48	4	0	0	0	0.0096669	3	20313	20266;20313;20363		79.935	34.235	1	1361300			56647	8379	32450	32451	69352;69353;69354	69353					0.025201435626513558
VYPAGFVYI	9	Unmodified	_VYPAGFVYI_					0	0	0		ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF;nc|ENSG00000214160|Q92685-2|ALG3;ENSG00000214160|ENST00000397676|ALG3	ENST00000461415.5_1_3:183962900-183966669:-|nuORF	ENST00000461415.5_1_3:183962900-183966669:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2953491210938	2	514.776211	1027.53787	0.52244	0.00026894	1.5032	0.00077382	2.0257	0.0010428	514.7765058182431	78.314	1.467	78.372	77.844	79.311	0.058151					128	58	4	0	0	0	0.017826	4	20249	20249;20301;20349;20398		67.413	26.967	1	1233800			56648	8379	32450	32451	69355;69356;69357;69358	69355					0.025201435626513558
VYPAGFVYI	9	Unmodified	_VYPAGFVYI_					0	0	0		ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF;nc|ENSG00000214160|Q92685-2|ALG3;ENSG00000214160|ENST00000397676|ALG3	ENST00000461415.5_1_3:183962900-183966669:-|nuORF	ENST00000461415.5_1_3:183962900-183966669:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2952270507812	2	514.776211	1027.53787	0.65796	0.0003387	1.2566	0.00064688	1.9146	0.00098558	514.7763765865253	78.429	1.4379	78.398	77.813	79.251	-0.030434					134	56	4	0	0	0	0.0096669	3	20259	20259;20306;20404		79.935	51.761	1	1284500			56649	8379	32450	32451	69359;69360;69361	69359					0.025201435626513558
VYPARTQTL	9	Unmodified	_VYPARTQTL_					0	0	0		ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7930297851562	2	524.792924	1047.57129	0.3663	0.00019223	-0.58215	-0.00030551	-0.21585	-0.00011328	524.7927924914902	31.096	0.96581	31.096	30.753	31.719	0					85	34	3	0	0	0	0.022205	2	5782	5734;5782		63.227	36.632	1	2726200			56650	8081	32451	32452	69362;69363	69363					0.049411453345555856
VYPARTQTL	9	Unmodified	_VYPARTQTL_					0	0	0		ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7930908203125	2	524.792924	1047.57129	0.24328	0.00012767	-0.74108	-0.00038892	-0.49781	-0.00026125	524.792874038021	31.064	0.85912	31.092	30.778	31.638	0.027946					95	30	4	0	0	0	0.015027	2	5736	5736;5784		71.708	42.626	1	2930000			56651	8081	32451	32452	69364;69365	69364					0.049411453345555856
VYPARTQTL	9	Unmodified	_VYPARTQTL_					0	0	0		ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	ENSG00000198502|ENST00000374975|HLA-DRB5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7930297851562	2	524.792924	1047.57129	0.41478	0.00021767	-0.83632	-0.00043889	-0.42154	-0.00022122	524.7927978572088	31.028	0.8218	31.056	30.784	31.606	0.027157					100	29	4	0	0	0	0.043711	3	5727	5727;5775;5848		55.235	32.498	1	3068800			56652	8081	32451	32452	69366;69367;69368	69366					0.049411453345555856
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.2933959960938	2	535.293091	1068.57163	-0.16894	-9.043E-05	0.66794	0.00035754	0.499	0.00026711	535.2934804778922	34.418	1.123	34.418	34.104	35.227	0					122	39	4	0	0	0	0.0046246	2	6766	6766;6815		89.401	53.274	1	8154800			56653	7801	32452	32453	69369;69370	69369					0.04008565054414248
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.2936401367188	2	535.293091	1068.57163	-0.30765	-0.00016468	0.74538	0.000399	0.43774	0.00023432	535.2935207844197	34.279	1.2695	34.346	34.04	35.309	0.06636					140	45	4	0	0	0	0.0046246	1	6757	6757		89.401	52.895	1	7301200			56654	7801	32452	32453	69371	69371					0.04008565054414248
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.2935791015625	2	535.293091	1068.57163	0.16886	9.0392E-05	0.32427	0.00017358	0.49313	0.00026397	535.2932883073801	34.216	1.2468	34.283	33.967	35.214	0.066704					129	44	4	0	0	0	0.003317	1	6727	6727		99.755	70.674	1	7854300			56655	7801	32452	32453	69372	69372					0.04008565054414248
VYPEESLVI	9	Unmodified	_VYPEESLVI_					0	0	0		ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7817993164062	2	524.78169	1047.54883	0.51013	0.00026771	-0.16838	-8.8363E-05	0.34175	0.00017934	524.7815142774195	67.907	1.3114	67.907	67.561	68.872	0					125	47	4	0	0	0	0.00077644	3	17087	17087;17135;17183		125.62	87.473	1	3439600			56656	7861	32453	32454	69373;69374;69375	69373					0.026955011462860057
VYPEESLVI	9	Unmodified	_VYPEESLVI_					0	0	0		ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.78173828125	2	524.78169	1047.54883	0.58067	0.00030473	-0.3431	-0.00018005	0.23757	0.00012467	524.7814096466026	67.882	1.4235	67.96	67.488	68.911	0.078041					132	51	4	0	0	0	0.00268	3	17049	17049;17099;17149		104.8	66.648	1	3513800			56657	7861	32453	32454	69376;69377;69378	69376					0.026955011462860057
VYPEESLVI	9	Unmodified	_VYPEESLVI_					0	0	0		ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	ENSG00000196419|ENST00000360079|XRCC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7817993164062	2	524.78169	1047.54883	0.50327	0.00026411	-0.26141	-0.00013718	0.24186	0.00012692	524.7814779716408	67.964	1.3051	67.948	67.593	68.898	-0.016304					114	46	4	0	0	0	0.0017972	3	17079	17079;17128;17177		112.59	74.442	1	3834500			56658	7861	32453	32454	69379;69380;69381	69379					0.026955011462860057
VYPEHGELL	9	Unmodified	_VYPEHGELL_					0	0	0		ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2820434570312	2	528.771657	1055.52876	0.25918	0.00013705	-0.81647	-0.00043173	-0.55729	-0.00029468	528.771406799232	61.856	0.49087	61.848	61.7	62.191	-0.0085564					29	17	2	0	0	0	0.26879	1	15306	15306		13.508	0.97634	1	179130			56659	8446	32454	32455	69382	69382					0.003217502063534994
VYPEKLATKF	10	Unmodified	_VYPEKLATKF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.3399658203125	2	598.339707	1194.66486	0.64935	0.00038853	-0.10474	-6.2669E-05	0.54461	0.00032586	598.3394675682889	40.441	1.0976	40.441	40.078	41.175	0					106	39	4	0	0	0	0.083104	3	8632	8584;8632;8686		51.765	30.326	1	1748000			56660	3999	32455	32456	69383;69384;69385	69384					0.07531444716960323
VYPEKLATKF	10	Unmodified	_VYPEKLATKF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.3399658203125	2	598.339707	1194.66486	0.72775	0.00043544	-0.096693	-5.7855E-05	0.63105	0.00037758	598.3394815806191	40.148	1.1947	40.24	39.943	41.138	0.09267					100	43	4	0	0	0	0.092344	2	8566	8517;8566		49.742	28.205	1	2272500			56661	3999	32455	32456	69386;69387	69387					0.07531444716960323
VYPEKLATKF	10	Unmodified	_VYPEKLATKF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3399658203125	2	598.339707	1194.66486	0.50173	0.0003002	0.070106	4.1947E-05	0.57183	0.00034215	598.3396346795847	40.151	1.2009	40.251	39.894	41.095	0.099407					100	43	4	0	0	0	0.075319	3	8540	8493;8540;8619		53.47	33.844	1	2035600			56662	3999	32455	32456	69388;69389;69390	69389					0.07531444716960323
VYPEMRMY	8	Unmodified	_VYPEMRMY_					0	0	0		ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	ENSG00000110328|ENST00000227756|GALNT18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7927856445312	2	544.748813	1087.48307	0.80543	0.00043876	1.1044	0.00060163	1.9098	0.0010404	544.7495978473662	56.623	0.39144	56.702	56.543	56.935	0.078674					26	14	3	0	0	0	0.34046	1	13629	13629		9.3474	0.75416	1	289190			56663	2305	32456	32457	69391	69391					-0.05716934571910315
VYPERTPLL	9	Unmodified	_VYPERTPLL_					0	0	0		ENST00000475235.1_1_6:32782088-32784728:-|nuORF;ENSG00000241106|ENST00000438763|HLA-DOB	ENST00000475235.1_1_6:32782088-32784728:-|nuORF	ENST00000475235.1_1_6:32782088-32784728:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.3110961914062	2	544.310949	1086.60735	0.73082	0.0003978	-0.20569	-0.00011196	0.52513	0.00028583	544.3106375047008	47.821	0.83829	47.821	47.493	48.331	0					74	29	4	0	0	0	0.069258	3	10906	10854;10906;10965		45.74	24.709	1	2582600			56664	8528	32457	32458	69392;69393;69394	69393					0.06750602511442594
VYPERTPLL	9	Unmodified	_VYPERTPLL_					0	0	0		ENST00000475235.1_1_6:32782088-32784728:-|nuORF;ENSG00000241106|ENST00000438763|HLA-DOB	ENST00000475235.1_1_6:32782088-32784728:-|nuORF	ENST00000475235.1_1_6:32782088-32784728:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.3109130859375	2	544.310949	1086.60735	0.94009	0.0005117	-0.42048	-0.00022887	0.51962	0.00028283	544.3104524882036	47.799	1.119	47.846	47.482	48.601	0.047523					83	41	3	0	0	0	0.069258	3	10838	10838;10889;10939		45.74	26.483	1	2843600			56665	8528	32457	32458	69395;69396;69397	69395					0.06750602511442594
VYPERTPLL	9	Unmodified	_VYPERTPLL_					0	0	0		ENST00000475235.1_1_6:32782088-32784728:-|nuORF;ENSG00000241106|ENST00000438763|HLA-DOB	ENST00000475235.1_1_6:32782088-32784728:-|nuORF	ENST00000475235.1_1_6:32782088-32784728:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.3108520507812	2	544.310949	1086.60735	0.83831	0.0004563	-0.25336	-0.00013791	0.58495	0.00031839	544.3105700051689	47.74	1.0287	47.783	47.504	48.533	0.04332					72	38	3	0	0	0	0.048637	2	10869	10818;10869		53.404	34.147	1	2950100			56666	8528	32457	32458	69398;69399	69399					0.06750602511442594
VYPESFREL	9	Unmodified	_VYPESFREL_					0	0	0		ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.2906494140625	2	570.290214	1138.56587	0.63294	0.00036096	-0.21707	-0.0001238	0.41587	0.00023717	570.290090383268	50.511	0.65542	50.511	50.241	50.896	0					41	23	2	0	0	0	0.059067	1	11714	11714		49.527	27.99	1	581300			56667	399	32458	32459	69400	69400					0.002134217521188475
VYPESFREL	9	Unmodified	_VYPESFREL_					0	0	0		ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2902221679688	2	570.290214	1138.56587	0.99675	0.00056844	-1.8774	-0.0010707	-0.88068	-0.00050224	570.2896660552207	50.404	0.66157	50.449	50.185	50.846	0.044891					69	23	4	0	0	0	0.10812	1	11696	11696		37.075	15.538	1	751930			56668	399	32458	32459	69401	69401					0.002134217521188475
VYPESFREL	9	Unmodified	_VYPESFREL_					0	0	0		ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.2905883789062	2	570.290214	1138.56587	0.88448	0.00050441	-0.41783	-0.00023828	0.46665	0.00026613	570.2899470462324	50.56	0.66739	50.581	50.281	50.949	0.020691					43	24	2	0	0	0	0.1426	1	11709	11709		32.037	21.964	1	605990			56669	399	32458	32459	69402	69402					0.002134217521188475
VYPEYVIQY	9	Unmodified	_VYPEYVIQY_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.2951049804688	2	587.294965	1172.57538	0.33406	0.00019619	-0.2992	-0.00017572	0.034869	2.0479E-05	587.2946189191774	67.313	2.2094	67.313	67.048	69.257	0					172	79	5	0	0	0	0.004681	5	16899	16899;16944;16990;17042;17107		88.954	12.928	1	7255000			56670	741	32459	32460	69403;69404;69405;69406;69407	69403					-0.00400809962366111
VYPEYVIQY	9	Unmodified	_VYPEYVIQY_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.2951049804688	2	587.294965	1172.57538	0.27077	0.00015902	-0.35524	-0.00020863	-0.084473	-4.9611E-05	587.2946402132883	67.196	1.5005	67.274	67.068	68.569	0.078041					130	53	3	0	0	0	0.0033114	2	16855	16855;16899		99.799	21.356	1	7658300			56671	741	32459	32460	69408;69409	69408					-0.00400809962366111
VYPEYVIQY	9	Unmodified	_VYPEYVIQY_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.2950439453125	2	587.294965	1172.57538	0.23083	0.00013557	-0.38744	-0.00022754	-0.15661	-9.1974E-05	587.2945470168528	67.326	2.2128	67.31	67.06	69.272	-0.016296					154	75	4	0	0	0	0.0042138	3	16888	16888;16937;16988		92.653	32.579	1	9109900			56672	741	32459	32460	69410;69411;69412	69410					-0.00400809962366111
VYPGDPLRF	9	Unmodified	_VYPGDPLRF_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.2828369140625	2	532.282192	1062.54983	0.50001	0.00026615	0.37602	0.00020015	0.87603	0.0004663	532.2823344422363	58.016	2.4575	58.016	57.578	60.035	0					228	86	4	0	0	0	0.0059482	4	14055	13954;14004;14055;14097		85.642	53.336	1	14491000			56673	6491	32460	32461	69413;69414;69415;69416	69415					0.021057603058579843
VYPGDPLRF	9	Unmodified	_VYPGDPLRF_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.2827758789062	2	532.282192	1062.54983	0.39069	0.00020796	0.41043	0.00021847	0.80112	0.00042642	532.2823611522244	57.84	2.2705	57.925	57.491	59.761	0.085621					237	81	5	0	0	0	0.0042138	3	14002	13906;13954;14002		92.653	60.348	1	15776000			56674	6491	32460	32461	69417;69418;69419	69419					0.021057603058579843
VYPGDPLRF	9	Unmodified	_VYPGDPLRF_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.28271484375	2	532.282192	1062.54983	0.67011	0.00035669	0.26801	0.00014266	0.93812	0.00049935	532.2822716152267	58.091	2.4728	58.074	57.606	60.079	-0.0172					246	88	5	0	0	0	0.0059482	4	14066	13969;14016;14066;14117		85.642	51.539	1	14009000			56675	6491	32460	32461	69420;69421;69422;69423	69422					0.021057603058579843
VYPGISKYTF	10	Unmodified	_VYPGISKYTF_					0	0	0		ENST00000338222.6_1_X:56592946-56593084:+|nuORF	ENST00000338222.6_1_X:56592946-56593084:+|nuORF	ENST00000338222.6_1_X:56592946-56593084:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.8106079101562	2	587.810782	1173.60701	0.32842	0.00019305	-1.146	-0.00067362	-0.81756	-0.00048057	587.8103717570793	71.572	1.0489	71.628	71.175	72.224	0.056572					85	37	3	0	0	0	0.073661	1	18234	18234		53.833	8.1332	1	1524900			56676	9501	32461	32462	69424	69424					0.027151827915531612
VYPGIVKK	8	Unmodified	_VYPGIVKK_					0	0	0		ENST00000432317.1_1_7:99614504-99621079:+|nuORF	ENST00000432317.1_1_7:99614504-99621079:+|nuORF	ENST00000432317.1_1_7:99614504-99621079:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	452.277587890625	2	452.286746	902.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.212	1	70.278	69.778	70.778	0.066048								0	0	0	0.3683	1	17778	17778		6.3541	0.59368	1				56677	10480	32462	32463	69425	69425					0.10376153662184606
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7787780761719	2	506.778754	1011.54295	0.28331	0.00014358	-0.060219	-3.0518E-05	0.22309	0.00011306	506.7786229213486	91.957	1.1331	91.957	91.564	92.697	0					235	81	4	0	0	0	0.00213	6	24437	24356;24395;24437;24478;24519;24556		109.15	0	1	1888400			56678	4429	32463	32464	69426;69427;69428;69429;69430;69431	69428					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.77886962890625	2	506.778754	1011.54295	0.22842	0.00011576	-0.028419	-1.4402E-05	0.2	0.00010135	506.7785819618096	93.034	0.87426	93.034	92.697	93.572	0					153	75	3	0	0	0	0.041522	2	24744	24744;24788		56.048	0	1	261640			56679	4429	32463	32464	69432;69433	69432					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.75299072265625	2	506.778754	1011.54295	0.16698	8.4622E-05	4.3038	0.0021811	4.4708	0.0022657	507.2840888207189	94.231	0.32753	94.231	94.087	94.415	0					36	28	2	0	0	0	0.24542	1	25112	25112		14.582	0	1	56702			56680	4429	32463	32464	69434	69434					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7789001464844	2	506.778754	1011.54295	0.29173	0.00014784	-0.13438	-6.8102E-05	0.15735	7.9743E-05	506.77862260226806	91.815	1.4168	91.906	91.508	92.925	0.090675					194	76	3	0	0	0	0.00070004	6	24382	24299;24339;24382;24425;24471;24510		126.6	0	1	2944600			56681	4429	32463	32464	69435;69436;69437;69438;69439;69440	69437					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.3094787597656	2	506.778754	1011.54295	0.23612	0.00011966	0.0041432	2.0997E-06	0.24026	0.00012176	507.28010590053304	93.697	0.4856	93.783	93.575	94.06	0.08667					51	37	2	0	0	0	0.15605	1	24907	24907		36.466	0	1	160310			56682	4429	32463	32464	69441	69441					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.309814453125	2	506.778754	1011.54295	0.26023	0.00013188	-0.035052	-1.7764E-05	0.22518	0.00011412	506.77863021652684	92.89	0.85682	92.979	92.561	93.418	0.089203					175	74	3	0	0	0	0.19319	1	24830	24830		28.173	0	1	513410			56683	4429	32463	32464	69442	69442					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.3094787597656	2	506.778754	1011.54295	0.24491	0.00012411	0.2395	0.00012138	0.48441	0.00024549	506.7787734876516	93.397	0.34149	93.484	93.394	93.736	0.08667					38	26	2	0	0	0	0.15605	1	24907	24907		36.466	0	1	94847			56684	4429	32463	32464	69443	69443					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.3099670410156	2	506.778754	1011.54295	0.20056	0.00010164	0.88189	0.00044692	1.0825	0.00054856	506.77919849573885	94.862	0.37865	94.945	94.86	95.239	0.082779					45	35	2	0	0	0	0.24542	1	25312	25312		14.582	0	1	67238			56685	4429	32463	32464	69444	69444					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.7786865234375	2	506.778754	1011.54295	0.4675	0.00023692	-0.25096	-0.00012718	0.21654	0.00010974	506.7785219250922	91.934	1.1344	91.934	91.544	92.678	0.00046539					221	74	4	0	0	0	0.00070004	5	24386	24342;24386;24430;24471;24512		126.6	0	1	4078700			56686	4429	32463	32464	69445;69446;69447;69448;69449	69446					0.037644474252715554
VYPGLAVFF	9	Unmodified	_VYPGLAVFF_					0	0	0		ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	ENST00000442441.5_1_21:34823127-34828329:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.3094787597656	2	506.778754	1011.54295	0.43774	0.00022184	-0.21426	-0.00010858	0.22348	0.00011325	506.77848937108246	92.999	1.0163	93	92.66	93.677	0.00047302					211	90	3	0	0	0	0.044139	1	24703	24703		67.413	0	1	571230			56687	4429	32463	32464	69450	69450					0.037644474252715554
VYPGRRPNN	9	Unmodified	_VYPGRRPNN_					0	0	0		nc|ENSG00000136250|P28039-2|AOAH;ENSG00000136250|ENST00000617537|AOAH	nc|ENSG00000136250|P28039-2|AOAH	nc|ENSG00000136250|P28039-2|AOAH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.8295288085938	2	536.785964	1071.55738	0.42003	0.00022547	1.0075	0.0005408	1.4275	0.00076627	537.2882576160365	69.092	0.30167	69.092	69.037	69.339	0					12	10	2	0	0	0	0.24739	1	17444	17444		13.508	0	1	140730			56688	3961	32464	32465	69451	69451					0.02445912626126301
VYPGYYFTF	9	Unmodified	_VYPGYYFTF_					0	0	0		nc|ENSG00000172197|Q6ZNC8-2|MBOAT1;ENSG00000172197|ENST00000324607|MBOAT1	nc|ENSG00000172197|Q6ZNC8-2|MBOAT1	nc|ENSG00000172197|Q6ZNC8-2|MBOAT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.7709350585938	2	578.771126	1155.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.861	1	83.845	83.345	84.345	-0.016823								0	0	0	0.051692	1	21944	21944		60.39	37.241	1				56689	6609	32465	32466	69452	69452					-0.043844641625810254
VYPGYYFTF	9	Unmodified	_VYPGYYFTF_					0	0	0		nc|ENSG00000172197|Q6ZNC8-2|MBOAT1;ENSG00000172197|ENST00000324607|MBOAT1	nc|ENSG00000172197|Q6ZNC8-2|MBOAT1	nc|ENSG00000172197|Q6ZNC8-2|MBOAT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.7713012695312	2	578.771126	1155.5277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.021	1	84.004	83.504	84.504	-0.016823								0	0	0	0.074381	1	21994	21994		53.576	30.427	1				56690	6609	32465	32466	69453	69453					-0.043844641625810254
VYPKKELPLF	10	Unmodified	_VYPKKELPLF_					0	0	0		nc|ENSG00000007341|Q8TDW4-2|ST7L;nc|ENSG00000007341|Q8TDW4-7|ST7L;nc|ENSG00000007341|Q8TDW4-5|ST7L;ENSG00000007341|ENST00000358039|ST7L;nc|ENSG00000007341|Q8TDW4-4|ST7L;nc|ENSG00000007341|Q8TDW4-6|ST7L;nc|ENSG00000007341|Q8TDW4-3|ST7L	nc|ENSG00000007341|Q8TDW4-2|ST7L	nc|ENSG00000007341|Q8TDW4-2|ST7L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.239501953125	3	411.912908	1232.7169	0.097995	4.0365E-05	-0.19027	-7.8373E-05	-0.092272	-3.8008E-05	411.91271207334773	49.304	0.6005	49.304	49.05	49.65	0					43	21	3	0	0	0	0.31746	1	11291	11291		9.544	3.3521	1	191720			56691	378	32466	32467	69454	69454					0.10984608130752349
VYPKKELPLF	10	Unmodified	_VYPKKELPLF_					0	0	0		nc|ENSG00000007341|Q8TDW4-2|ST7L;nc|ENSG00000007341|Q8TDW4-7|ST7L;nc|ENSG00000007341|Q8TDW4-5|ST7L;ENSG00000007341|ENST00000358039|ST7L;nc|ENSG00000007341|Q8TDW4-4|ST7L;nc|ENSG00000007341|Q8TDW4-6|ST7L;nc|ENSG00000007341|Q8TDW4-3|ST7L	nc|ENSG00000007341|Q8TDW4-2|ST7L	nc|ENSG00000007341|Q8TDW4-2|ST7L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.912908	1232.7169	0.16501	6.797E-05	-0.35803	-0.00014748	-0.19302	-7.9506E-05	411.91256490220565	49.276	0.55997	49.321	49.135	49.695	0.044888	0.0082435	-0.00011155	NaN	9.544	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292070			56692	378	32466	32467							0.10984608130752349
VYPLFRYLT	9	Unmodified	_VYPLFRYLT_					0	0	0		ENST00000425713.1_1_13:19700631-19713554:+|nuORF	ENST00000425713.1_1_13:19700631-19713554:+|nuORF	ENST00000425713.1_1_13:19700631-19713554:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.780029296875	2	586.329142	1170.64373	-0.032405	-1.9E-05	3.104	0.00182	3.0716	0.001801	586.3311727549136	12.756	0.23637	12.656	12.521	12.757	-0.099291					11	7	2	0	0	0	0.25938	1	227	227		4.3292	1.0479	1	26449			56693	10408	32467	32468	69455	69455					0.06523479408110688
VYPLMKEYF	9	Oxidation (M)	_VYPLM(Oxidation (M))KEYF_		VYPLM(1)KEYF		VYPLM(86)KEYF	0	0	1		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.2996826171875	2	603.299193	1204.58383	0.84407	0.00050923	-1.0075	-0.0006078	-0.16339	-9.8575E-05	603.298548808088	54.834	1.6152	54.834	54.348	55.963	0					182	58	5	0	0	0	0.0059482	4	13111	13111;13164;13211;13260		85.642	53.336	1	37010000			56694	1535	32468	32469	69456;69457;69458;69459	69456		190			-0.010275793174287173
VYPLMKEYF	9	Oxidation (M)	_VYPLM(Oxidation (M))KEYF_		VYPLM(1)KEYF		VYPLM(110)KEYF	0	0	1		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.2996215820312	2	603.299193	1204.58383	0.81166	0.00048967	-1.1166	-0.00067363	-0.30493	-0.00018396	603.2984860573858	54.784	1.6288	54.847	54.353	55.982	0.063202					184	60	5	0	0	0	0.0019475	4	13085	13036;13085;13128;13182		110.67	78.369	1	38039000			56695	1535	32468	32469	69460;69461;69462;69463	69461		190			-0.010275793174287173
VYPLMKEYF	9	Oxidation (M)	_VYPLM(Oxidation (M))KEYF_		VYPLM(1)KEYF		VYPLM(89)KEYF	0	0	1		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.3002319335938	2	603.299193	1204.58383	0.66124	0.00039892	-0.21009	-0.00012675	0.45114	0.00027217	603.299048599764	55.047	1.5592	55.029	54.629	56.188	-0.01807					191	57	5	0	0	0	0.0046246	3	13243	13243;13294;13409		89.401	58.764	1	47213000			56696	1535	32468	32469	69464;69465;69466	69464		190			-0.010275793174287173
VYPLYTIVF	9	Unmodified	_VYPLYTIVF_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.81298828125	2	557.812793	1113.61103	0.30563	0.00017049	0.71377	0.00039815	1.0194	0.00056864	557.812874848941	92.735	1.0872	92.824	92.3	93.387	0.089195					255	91	4	0	0	0	0.0016131	11	24661	24534;24562;24581;24621;24661;24701;24740;24777;24789;24792;24800		114.94	68.023	1	692040			56697	660	32469	32470	69467;69468;69469;69470;69471;69472;69473;69474;69475;69476;69477	69471					0.05877272285283652
VYPLYTIVF	9	Unmodified	_VYPLYTIVF_					0	0	0		nc|ENSG00000050130|Q9P055-2|JKAMP;nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.8131103515625	2	557.812793	1113.61103	0.40046	0.00022338	0.50089	0.0002794	0.90136	0.00050279	557.8128236592759	92.841	1.1229	92.842	92.305	93.428	0.00046539					231	95	4	0	0	0	0.0030686	8	24658	24567;24569;24614;24658;24696;24735;24774;24812		101.72	54.801	1	690580			56698	660	32469	32470	69478;69479;69480;69481;69482;69483;69484;69485	69481					0.05877272285283652
VYPNSFFRY	9	Unmodified	_VYPNSFFRY_					0	0	0		nc|ENSG00000116151|Q5T089-2|MORN1;ENSG00000116151|ENST00000378531|MORN1	nc|ENSG00000116151|Q5T089-2|MORN1	nc|ENSG00000116151|Q5T089-2|MORN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.2952880859375	2	596.792924	1191.57129	0.50849	0.00030346	1.5208	0.00090762	2.0293	0.0012111	596.792657626843	59.189	0.90503	59.175	58.806	59.711	-0.014267					74	31	4	0	0	0	0.07848	1	14412	14412		42.312	20.722	1	1291800			56699	2708	32470	32471	69486	69486					-0.016828546654323873
VYPPGGQPLL	10	Unmodified	_VYPPGGQPLL_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.7579956054688	2	520.792392	1039.57023	0.10814	5.632E-05	-0.46357	-0.00024142	-0.35543	-0.0001851	520.7922773314068	60.136	0.7645	60.136	59.756	60.521	0					34	27	2	0	0	0	0.23848	1	14737	14737		37.974	17.52	1	434780			56700	2170	32471	32472	69487	69487					0.05202930965674568
VYPPGGQPLL	10	Unmodified	_VYPPGGQPLL_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.7581787109375	2	520.792392	1039.57023	-0.2348	-0.00012228	-0.021715	-1.1309E-05	-0.25651	-0.00013359	520.7924404365694	59.896	0.67701	59.991	59.798	60.475	0.095089					38	24	2	0	0	0	0.2266	1	14580	14580		41.84	20.093	1	535130			56701	2170	32471	32472	69488	69488					0.05202930965674568
VYPPGGQPLL	10	Unmodified	_VYPPGGQPLL_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7579345703125	2	520.792392	1039.57023	0.24182	0.00012594	-0.9537	-0.00049668	-0.71187	-0.00037074	520.7920337967672	60.134	0.83373	60.123	59.652	60.485	-0.011486					46	29	2	0	0	0	0.21704	1	14667	14667		43.858	25.723	1	386730			56702	2170	32471	32472	69489	69489					0.05202930965674568
VYPPGIDLI	9	Unmodified	_VYPPGIDLI_					0	0	0		ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.78173828125	2	493.781493	985.548434	0.75086	0.00037076	-0.66619	-0.00032895	0.084676	4.1811E-05	493.7812244423123	77.635	1.0765	77.635	77.282	78.358	0					83	39	3	0	0	0	0.12846	1	20032	20032		44.407	14.182	1	712430			56703	4948	32472	32473	69490	69490					0.055081262171029266
VYPPGIDLI	9	Unmodified	_VYPPGIDLI_					0	0	0		ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7816467285156	2	493.781493	985.548434	0.74687	0.00036879	-0.84701	-0.00041824	-0.10014	-4.9448E-05	493.7812106428448	77.644	0.96576	77.699	77.258	78.223	0.055412					86	34	4	0	0	0	0.18943	1	20055	20055		30.225	5.5509	1	710050			56704	4948	32472	32473	69491	69491					0.055081262171029266
VYPPGIDLI	9	Unmodified	_VYPPGIDLI_					0	0	0		ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	ENSG00000151240|ENST00000280886|DIP2C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.78173828125	2	493.781493	985.548434	0.82449	0.00040712	-0.90309	-0.00044593	-0.078606	-3.8814E-05	493.78115045849813	77.671	0.80462	77.639	77.316	78.121	-0.031334					71	28	3	0	0	0	0.089551	1	20032	20032		53.576	23.351	1	803090			56705	4948	32472	32473	69492	69492					0.055081262171029266
VYPPIRHHL	9	Unmodified	_VYPPIRHHL_					0	0	0		VPS37A|p.S81R|1|0.12|ENSG00000155975|chr8:17268300-17268300|T/G|missense_variant;nc|ENSG00000155975|Q8NEZ2-3|VPS37A;nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A	VPS37A|p.S81R|1|0.12|ENSG00000155975|chr8:17268300-17268300|T/G|missense_variant	VPS37A|p.S81R|1|0.12|ENSG00000155975|chr8:17268300-17268300|T/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.3251953125	2	566.324725	1130.6349	-0.035525	-2.0118E-05	0.70279	0.00039801	0.66727	0.00037789	566.3250365705372	27.766	0.95342	27.766	27.38	28.333	0					71	32	3	0	0	0	0.17787	2	4730	4730;4778		26.884	7.6267	1	210800			56706	5211	32473	32474	69493;69494	69493					0.07480550562308963
VYPPIRHHL	9	Unmodified	_VYPPIRHHL_					0	0	0		VPS37A|p.S81R|1|0.12|ENSG00000155975|chr8:17268300-17268300|T/G|missense_variant;nc|ENSG00000155975|Q8NEZ2-3|VPS37A;nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A	VPS37A|p.S81R|1|0.12|ENSG00000155975|chr8:17268300-17268300|T/G|missense_variant	VPS37A|p.S81R|1|0.12|ENSG00000155975|chr8:17268300-17268300|T/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.3262329101562	2	566.324725	1130.6349	0.053564	3.0335E-05	0.7103	0.00040226	0.76387	0.0004326	566.3251794168538	27.773	0.9077	27.752	27.242	28.15	-0.021412					64	31	3	0	0	0	0.17787	2	4730	4730;4778		26.884	8.5106	1	266830			56707	5211	32473	32474	69495;69496	69495					0.07480550562308963
VYPQYVIEY	9	Unmodified	_VYPQYVIEY_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.2953491210938	2	587.294965	1172.57538	0.35641	0.00020932	0.032417	1.9038E-05	0.38882	0.00022835	587.2951345803289	66.866	0.59048	66.866	66.545	67.135	0					78	20	5	0	0	0	0.00070271	3	16813	16721;16769;16813		126.57	91.145	1	13071000			56708	2038	32474	32475	69497;69498;69499	69499					-0.004008099623888484
VYPQYVIEY	9	Unmodified	_VYPQYVIEY_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.2950439453125	2	587.294965	1172.57538	0.33406	0.00019619	-0.2992	-0.00017572	0.034869	2.0479E-05	587.2946189191774	67.313	2.2094	67.313	67.048	69.257	0					172	79	5	0	0	0	0.010453	1	16858	16858		78.728	0	1	7255000			56709	2038	32474	32475	69500	69500					-0.004008099623888484
VYPQYVIEY	9	Unmodified	_VYPQYVIEY_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.2955932617188	2	587.294965	1172.57538	0.28637	0.00016818	0.0729	4.2814E-05	0.35926	0.00021099	587.2952113538528	66.778	1.1141	66.862	66.467	67.582	0.083832					99	39	5	0	0	0	0.00094673	3	16726	16677;16726;16770		123.45	91.145	1	15939000			56710	2038	32474	32475	69501;69502;69503	69502					-0.004008099623888484
VYPQYVIEY	9	Unmodified	_VYPQYVIEY_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.2949829101562	2	587.294965	1172.57538	0.27077	0.00015902	-0.35524	-0.00020863	-0.084473	-4.9611E-05	587.2946402132883	67.196	1.5005	67.274	67.068	68.569	0.078041					130	53	3	0	0	0	0.010453	4	16811	16811;16952;17005;17173		78.728	0.59474	1	7658300			56711	2038	32474	32475	69504;69505;69506;69507	69504					-0.004008099623888484
VYPQYVIEY	9	Unmodified	_VYPQYVIEY_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.2955322265625	2	587.294965	1172.57538	0.18045	0.00010598	0.22934	0.00013469	0.40979	0.00024067	587.2952597352211	66.914	0.91437	66.9	66.539	67.453	-0.013588					84	20	5	0	0	0	0.00094673	3	16757	16709;16757;16801		123.45	98.051	1	15157000			56712	2038	32474	32475	69508;69509;69510	69509					-0.004008099623888484
VYPQYVIEY	9	Unmodified	_VYPQYVIEY_					0	0	0		ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	ENSG00000105939|ENST00000242351|ZC3HAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.2949829101562	2	587.294965	1172.57538	0.23083	0.00013557	-0.38744	-0.00022754	-0.15661	-9.1974E-05	587.2945470168528	67.326	2.2128	67.31	67.06	69.272	-0.016296					154	75	4	0	0	0	0.010453	1	16845	16845		78.728	0	1	9109900			56713	2038	32474	32475	69511	69511					-0.004008099623888484
VYPSAFVLI	9	Unmodified	_VYPSAFVLI_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.79193115234375	2	504.791861	1007.56917	0.51497	0.00025995	-0.27039	-0.00013649	0.24458	0.00012346	504.79195388902417	85.872	0.76558	85.872	85.663	86.429	0					40	28	2	0	0	0	0.079066	2	22571	22571;22623		42.095	17.421	1	384660			56714	3084	32475	32476	69512;69513	69512					0.06568716596768809
VYPSAFVLI	9	Unmodified	_VYPSAFVLI_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7920837402344	2	504.791861	1007.56917	0.44143	0.00022283	-0.21496	-0.00010851	0.22647	0.00011432	504.7918881955732	85.763	0.59119	85.847	85.618	86.209	0.084251					38	21	2	0	0	0	0.055495	1	22542	22542		50.855	16.668	1	433980			56715	3084	32475	32476	69514	69514					0.06568716596768809
VYPSAFVLI	9	Unmodified	_VYPSAFVLI_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7919921875	2	504.791861	1007.56917	0.51055	0.00025772	-0.1747	-8.8188E-05	0.33585	0.00016953	504.7919281890064	85.853	0.66772	85.844	85.615	86.283	-0.0090027					40	24	2	0	0	0	0.029841	2	22564	22564;22584		60.39	17.422	1	378100			56716	3084	32475	32476	69515;69516	69515					0.06568716596768809
VYPSKQFDVL	10	Unmodified	_VYPSKQFDVL_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19545799-19546215:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.3216552734375	2	598.321514	1194.62847	0.5759	0.00034457	-0.33748	-0.00020192	0.23841	0.00014265	598.3213968464133	53.229	0.81647	53.229	52.932	53.749	0					69	30	3	0	0	0	0.17571	1	12547	12547		35.612	15.198	1	1256000			56717	3320	32476	32477	69517	69517					0.038945678202935596
VYPSKQFDVL	10	Unmodified	_VYPSKQFDVL_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19545799-19546215:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.3214721679688	2	598.321514	1194.62847	0.64682	0.00038701	-0.22635	-0.00013543	0.42047	0.00025158	598.3214880356926	53.28	0.82784	53.336	52.966	53.794	0.056259					70	30	3	0	0	0	0.21748	1	12535	12535		40.725	14.457	1	1268300			56718	3320	32476	32477	69518	69518					0.038945678202935596
VYPSKQFDVL	10	Unmodified	_VYPSKQFDVL_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19545799-19546215:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3221435546875	2	598.321514	1194.62847	0.47528	0.00028437	0.13574	8.1214E-05	0.61102	0.00036559	598.3217166339273	53.416	0.86798	53.407	53.004	53.872	-0.0096092					74	32	3	0	0	0	0.10152	1	12595	12595		47.732	30.619	1	1153600			56719	3320	32476	32477	69519	69519					0.038945678202935596
VYPSSLSKI	9	Unmodified	_VYPSSLSKI_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.2846984863281	2	497.2844	992.554247	0.37776	0.00018785	0.1122	5.5793E-05	0.48995	0.00024365	497.2844018985804	43.155	0.51086	43.155	42.93	43.441	0					52	18	4	0	0	0	0.13643	1	9443	9443		45.7	18.816	1	1130100			56720	2367	32477	32478	69520	69520					0.05767224728754172
VYPSSLSKI	9	Unmodified	_VYPSSLSKI_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.2844543457031	2	497.2844	992.554247	0.40166	0.00019974	-0.041825	-2.0799E-05	0.35983	0.00017894	497.28433810804097	42.892	0.62392	42.977	42.731	43.355	0.085201					54	22	4	0	0	0	0.075068	1	9370	9370		65.474	31.072	1	1303700			56721	2367	32477	32478	69521	69521					0.05767224728754172
VYPSSLSKI	9	Unmodified	_VYPSSLSKI_					0	0	0		ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1	ENSG00000111530|ENST00000545606|CAND1	ENSG00000111530|ENST00000545606|CAND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2843322753906	2	497.2844	992.554247	0.14553	7.2369E-05	0.067637	3.3635E-05	0.21317	0.000106	497.2843802464072	42.82	0.67249	42.911	42.691	43.363	0.091362					60	24	3	0	0	0	0.10059	1	9384	9384		38.176	11.292	1	1386100			56722	2367	32477	32478	69522	69522					0.05767224728754172
VYPTAVHVL	9	Unmodified	_VYPTAVHVL_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.76922607421875	2	499.78711	997.559667	0.50069	0.00025024	-1.0474	-0.00052347	-0.5467	-0.00027323	499.7866612043539	49.174	0.62978	49.174	48.912	49.542	0					55	22	3	0	0	0	0.14219	1	11296	11296		32.117	12.678	1	641040			56723	2422	32478	32479	69523	69523					0.06078948311221666
VYPTAVHVL	9	Unmodified	_VYPTAVHVL_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7693786621094	2	499.78711	997.559667	0.19179	9.5855E-05	-0.51605	-0.00025792	-0.32426	-0.00016206	499.78682264685915	49.189	0.6699	49.221	48.878	49.548	0.032043					49	23	3	0	0	0	0.089551	1	11303	11303		53.576	30.839	1	785430			56724	2422	32478	32479	69524	69524					0.06078948311221666
VYPTAVHVL	9	Unmodified	_VYPTAVHVL_					0	0	0		ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	ENSG00000112234|ENST00000369244|FBXL4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	499.78711	997.559667	0.3358	0.00016783	-0.87568	-0.00043765	-0.53988	-0.00026982	499.78665151924525	49.188	0.63401	49.233	48.906	49.54	0.044891	0.023455	-0.00013457	NaN	36.044	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	729300			56725	2422	32478	32479							0.06078948311221666
VYPTKTFPNL	10	Unmodified	_VYPTKTFPNL_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.3422241210938	2	590.324057	1178.63356	0.35182	0.00020769	0.52263	0.00030852	0.87446	0.00051621	590.3241673434	51.894	0.5374	51.894	51.729	52.267	0					50	19	3	0	0	0	0.3001	1	12135	12135		20.415	5.1661	1	695930			56726	4018	32479	32480	69525	69525					0.05138871682879653
VYPTKTFPNL	10	Unmodified	_VYPTKTFPNL_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.3424682617188	2	590.324057	1178.63356	0.16785	9.9086E-05	0.73019	0.00043105	0.89805	0.00053014	590.3243165918245	51.989	0.70577	51.988	51.764	52.469	-0.00081253					57	25	4	0	0	0	0.23397	1	12177	12177		28.495	10.121	1	613900			56727	4018	32479	32480	69526	69526					0.05138871682879653
VYPTKTFPNL	10	Unmodified	_VYPTKTFPNL_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	590.324057	1178.63356	0.35182	0.00020769	0.52263	0.00030852	0.87446	0.00051621	590.3241673434	51.894	0.5374	51.894	51.729	52.267	0	-0.042247	-0.00011153	NaN	28.495	50	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	695930			56728	4018	32479	32480							0.05138871682879653
VYPTKTFPNL	10	Unmodified	_VYPTKTFPNL_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	590.324057	1178.63356	0.39686	0.00023428	0.57842	0.00034146	0.97528	0.00057573	590.3242126310871	51.876	0.55337	51.927	51.729	52.282	0.050575	-0.0095537	-4.5669E-05	NaN	28.495	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	629170			56729	4018	32479	32480							0.05138871682879653
VYPTLSQQL	9	Unmodified	_VYPTLSQQL_					0	0	0		ENSG00000160218|ENST00000291574|TRAPPC10;nc|ENSG00000160218|P48553-2|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.73681640625	2	524.787307	1047.56006	0.58137	0.0003051	0.76223	0.00040001	1.3436	0.0007051	524.7878238927035	58.256	0.7207	58.256	57.904	58.624	0					41	24	2	0	0	0	0.12563	1	14122	14122		47.749	25.012	1	367350			56730	5448	32480	32481	69527	69527					0.038183232404207956
VYPTLSQQL	9	Unmodified	_VYPTLSQQL_					0	0	0		ENSG00000160218|ENST00000291574|TRAPPC10;nc|ENSG00000160218|P48553-2|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7366943359375	2	524.787307	1047.56006	0.49943	0.00026209	0.55717	0.0002924	1.0566	0.00055449	524.7877375027796	58.203	0.63255	58.289	57.891	58.524	0.085621					36	22	2	0	0	0	0.09064	1	14070	14070		56.177	27.095	1	232070			56731	5448	32480	32481	69528	69528					0.038183232404207956
VYPTLSQQL	9	Unmodified	_VYPTLSQQL_					0	0	0		ENSG00000160218|ENST00000291574|TRAPPC10;nc|ENSG00000160218|P48553-2|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7366943359375	2	524.787307	1047.56006	0.86304	0.00045291	0.39072	0.00020505	1.2538	0.00065796	524.7875632493979	58.342	0.5472	58.327	58.036	58.583	-0.014267					33	19	2	0	0	0	0.14961	1	14167	14167		41.84	12.758	1	382930			56732	5448	32480	32481	69529	69529					0.038183232404207956
VYPTSFIITI	10	Unmodified	_VYPTSFIITI_					0	0	0		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.329345703125	2	577.328808	1152.64306	0.34196	0.00019742	0.63893	0.00036887	0.98089	0.0005663	577.3292132239343	89.296	0.59861	89.296	89.092	89.69	0					75	32	3	0	0	0	0.001143	3	23613	23613;23659;23704		118.89	46.972	1	387900			56733	6397	32481	32482	69530;69531;69532	69530					0.07284639968429474
VYPTSFIITI	10	Unmodified	_VYPTSFIITI_					0	0	0		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3290405273438	2	577.328808	1152.64306	0.40344	0.00023292	0.55557	0.00032074	0.95901	0.00055366	577.32914964575	89.198	0.60571	89.289	89.073	89.679	0.090561					82	35	3	0	0	0	0.0023361	3	23557	23557;23598;23644		107.19	49.521	1	470230			56734	6397	32481	32482	69533;69534;69535	69533					0.07284639968429474
VYPTSFIITI	10	Unmodified	_VYPTSFIITI_					0	0	0		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.3294067382812	2	577.328808	1152.64306	0.35686	0.00020603	0.55174	0.00031854	0.90861	0.00052456	577.3290799231986	89.332	0.55389	89.331	89.051	89.604	-0.00080872					74	28	4	0	0	0	0.0014601	2	23636	23591;23636		114.65	52.076	1	400400			56735	6397	32481	32482	69536;69537	69537					0.07284639968429474
VYPTSFIITI	10	Unmodified	_VYPTSFIITI_					0	0	0		nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	nc|ENSG00000169894|Q02505-4|MUC3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	577.328808	1152.64306	0.36618	0.00021141	-2.7435	-0.0015839	-2.3773	-0.0013725	577.8300815970476	89.666	0.054413	89.665	89.648	89.702	-0.00080872	0.24871	-0.0038504	NaN	118.89	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43036			56736	6397	32481	32482							0.07284639968429474
VYPVDCIK	8	Unmodified	_VYPVDCIK_					0	0	0		ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	ENSG00000102743|ENST00000338625|SLC25A15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.7284851074219	2	468.746596	935.478639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.342	1	62.342	61.842	62.842	0								0	0	0	0.31323	1	15375	15375		26.884	2.2098	1				56737	1777	32482	32483	69538	69538					0.008319242768152435
VYPVITARL	9	Unmodified	_VYPVITARL_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8079223632812	2	516.316035	1030.61752	0.37546	0.00019386	-0.046698	-2.4111E-05	0.32876	0.00016975	516.3158643360284	55.276	0.90259	55.276	54.917	55.82	0					68	32	3	0	0	0	0.12329	1	13129	13129		49.554	13.427	1	630710			56738	1859	32483	32484	69539	69539					0.10343210236646883
VYPVITARL	9	Unmodified	_VYPVITARL_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.8076782226562	2	516.316035	1030.61752	0.50671	0.00026162	-0.50539	-0.00026094	0.0013192	6.8113E-07	516.3154569061209	55.218	1.0771	55.289	54.674	55.751	0.070885					67	39	3	0	0	0	0.15943	1	13090	13090		39.95	3.8227	1	657650			56739	1859	32483	32484	69540	69540					0.10343210236646883
VYPVITARL	9	Unmodified	_VYPVITARL_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.8079223632812	2	516.316035	1030.61752	0.35516	0.00018337	-0.65749	-0.00033947	-0.30234	-0.0001561	516.3152758205766	55.39	1.096	55.371	54.678	55.774	-0.019081					60	40	2	0	0	0	0.16853	1	13137	13137		31.268	8.5321	1	520700			56740	1859	32483	32484	69541	69541					0.10343210236646883
VYPWLGALL	9	Unmodified	_VYPWLGALL_					0	0	0		ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2992553710938	2	516.299853	1030.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.069	1	49.114	48.614	49.614	0.044891								0	0	0	0.20509	1	11276	11276		20.871	3.7847	1				56741	997	32484	32485	69542	69542					0.07108422833653094
VYPYKLYRL	9	Unmodified	_VYPYKLYRL_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.8979797363281	3	405.569253	1213.68593	0.16506	6.6943E-05	0.086855	3.5226E-05	0.25191	0.00010217	405.56915834364077	48.12	0.78653	48.12	47.849	48.636	0					63	27	4	0	0	0	0.23783	1	11099	11099		8.1555	0	1	2085700			56742	6978	32485	32486	69543	69543					0.08763454816494232
VYPYKLYRL	9	Unmodified	_VYPYKLYRL_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.2870483398438	2	607.850242	1213.68593	0.67154	0.00040819	-0.13055	-7.9352E-05	0.54099	0.00032884	607.8499340148072	48.084	0.62074	48.084	47.908	48.528	0					32	21	2	0	0	0	0.21389	1	10995	10995		25.399	13.759	1	607850			56743	6978	32485	32486	69544	69544					0.08763454816494232
VYPYKLYRL	9	Unmodified	_VYPYKLYRL_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.7634582519531	3	405.569253	1213.68593	0.2983	0.00012098	0.14406	5.8424E-05	0.44235	0.0001794	405.56915107806253	48.037	1.0761	48.084	47.669	48.745	0.04752					76	39	3	0	0	0	0.2322	1	10954	10954		19.362	8.463	1	2202500			56744	6978	32485	32486	69545	69545					0.08763454816494232
VYPYKLYRL	9	Unmodified	_VYPYKLYRL_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.2874755859375	2	607.850242	1213.68593	0.83802	0.00050939	-0.069838	-4.2451E-05	0.76818	0.00046694	608.3519985296044	47.969	0.55479	48.016	47.836	48.39	0.04752					32	20	2	0	0	0	0.2322	1	10973	10973		20.454	8.8133	1	666660			56745	6978	32485	32486	69546	69546					0.08763454816494232
VYPYKLYRL	9	Unmodified	_VYPYKLYRL_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.8978576660156	3	405.569253	1213.68593	0.15806	6.4103E-05	0.070346	2.853E-05	0.2284	9.2633E-05	405.56916496157214	47.976	1.2015	48.019	47.662	48.864	0.04332					78	44	3	0	0	0	0.23783	1	11062	11062		12.241	6.0488	1	2713500			56746	6978	32485	32486	69547	69547					0.08763454816494232
VYPYKLYRL	9	Unmodified	_VYPYKLYRL_					0	0	0		ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.7742309570312	2	607.850242	1213.68593	0.5404	0.00032848	0.049531	3.0108E-05	0.58993	0.00035859	607.8500225022841	47.97	0.55508	48.013	47.875	48.43	0.043324					29	20	2	0	0	0	0.21389	1	10899	10899		25.399	14.575	1	957820			56747	6978	32485	32486	69548	69548					0.08763454816494232
VYQAIQINI	9	Unmodified	_VYQAIQINI_					0	0	0		nc|ENSG00000068885|Q9P2H3-2|IFT80;ENSG00000068885|ENST00000326448|IFT80;nc|ENSG00000068885|Q9P2H3-3|IFT80;ENST00000463240.1_1_3:159992387-159995209:-|nuORF	nc|ENSG00000068885|Q9P2H3-2|IFT80	nc|ENSG00000068885|Q9P2H3-2|IFT80	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3343505859375	2	531.303124	1060.5917	0.4187	0.00022246	0.010509	5.5833E-06	0.42921	0.00022804	531.3031468559002	69.252	0.52599	69.252	68.872	69.398	0					25	18	2	0	0	0	0.23784	1	17486	17486		19.257	3.4098	1	126540			56748	892	32486	32487	69549	69549					0.06382315994369492
VYQAYWKAV	9	Unmodified	_VYQAYWKAV_					0	0	0		ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	ENSG00000124574|ENST00000372530|ABCC10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3008422851562	2	564.297842	1126.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.389	1	53.389	52.889	53.889	0								0	0	0	0.21726	1	12604	12604		16.942	1.0951	1				56749	3168	32487	32488	69550	69550					0.02290333339942663
VYQEMPAQL	9	Oxidation (M)	_VYQEM(Oxidation (M))PAQL_		VYQEM(1)PAQL		VYQEM(86)PAQL	0	0	1		ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA	ENSG00000248098|ENST00000269980|BCKDHA	ENSG00000248098|ENST00000269980|BCKDHA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.76318359375	2	547.762975	1093.5114	0.17828	9.7657E-05	-0.049894	-2.733E-05	0.12839	7.0327E-05	547.7631280145869	42.651	0.81514	42.651	42.193	43.008	0					83	29	4	0	0	0	0.018737	1	9302	9302		86.332	36.399	1	1364300			56750	8578	32488	32489	69551	69551		918			-0.031619133909771335
VYQEMPAQL	9	Oxidation (M)	_VYQEM(Oxidation (M))PAQL_		VYQEM(1)PAQL		VYQEM(110)PAQL	0	0	1		ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA	ENSG00000248098|ENST00000269980|BCKDHA	ENSG00000248098|ENST00000269980|BCKDHA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7630615234375	2	547.762975	1093.5114	0.50074	0.00027429	-0.65336	-0.00035788	-0.15261	-8.3595E-05	547.762841422622	42.368	0.79789	42.453	42.093	42.891	0.085197					88	28	4	0	0	0	0.001957	1	9226	9226		110.55	60.62	1	1226800			56751	8578	32488	32489	69552	69552		918			-0.031619133909771335
VYQEMPAQL	9	Oxidation (M)	_VYQEM(Oxidation (M))PAQL_		VYQEM(1)PAQL		VYQEM(65)PAQL	0	0	1		ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA	ENSG00000248098|ENST00000269980|BCKDHA	ENSG00000248098|ENST00000269980|BCKDHA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7631225585938	2	547.762975	1093.5114	0.55689	0.00030504	-0.051479	-2.8198E-05	0.50541	0.00027684	547.7629029913812	42.243	0.87122	42.334	42.007	42.879	0.091362					76	30	3	0	0	0	0.01909	2	9160	9160;9217		65.474	29.347	1	1204400			56752	8578	32488	32489	69553;69554	69553		918			-0.031619133909771335
VYQEVQAMF	9	Oxidation (M)	_VYQEVQAM(Oxidation (M))F_		VYQEVQAM(1)F		VYQEVQAM(100)F	0	0	1		ENSG00000171262|ENST00000397609|FAM98B;ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B	ENSG00000171262|ENST00000397609|FAM98B	ENSG00000171262|ENST00000397609|FAM98B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7630615234375	2	565.762975	1129.5114	0.23726	0.00013423	0.13946	7.8902E-05	0.37672	0.00021313	565.763070151656	52.228	0.85839	52.228	51.885	52.743	0					70	30	4	0	0	0	0.0056456	1	12202	12202		103.42	74.338	1	1469000			56753	6531	32489	32490	69555	69555		758			-0.04817913390979811
VYQEVQAMF	9	Oxidation (M)	_VYQEVQAM(Oxidation (M))F_		VYQEVQAM(1)F		VYQEVQAM(100)F	0	0	1		ENSG00000171262|ENST00000397609|FAM98B;ENST00000305752.4_1_15:38756353-38762648:+|nuORF;nc|ENSG00000171262|Q52LJ0-1|FAM98B	ENSG00000171262|ENST00000397609|FAM98B	ENSG00000171262|ENST00000397609|FAM98B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7631225585938	2	565.762975	1129.5114	0.089423	5.0592E-05	0.24026	0.00013593	0.32968	0.00018652	565.7630945796626	52.275	0.76448	52.275	51.982	52.746	-0.00081253					67	27	4	0	0	0	0.0063009	1	12276	12276		99.755	61.781	1	1376800			56754	6531	32489	32490	69556	69556		758			-0.04817913390979811
VYQFPLIKN	9	Unmodified	_VYQFPLIKN_					0	0	0			REV__nc|ENSG00000135457|Q12800-2|TFCP2	REV__nc|ENSG00000135457|Q12800-2|TFCP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2692260742188	2	561.321317	1120.62808	0.27939	0.00015682	-0.52874	-0.00029679	-0.24935	-0.00013997	561.3210810986393	68.229	0.43915	68.229	67.997	68.436	0					26	16	2	0	0	0	0.1659	1	17215	17215		36.044	12.896	1	378720	+		56755	15743	32490	32491	69557	69557					0.07259192891092425
VYQFPLIKN	9	Unmodified	_VYQFPLIKN_					0	0	0			REV__nc|ENSG00000135457|Q12800-2|TFCP2	REV__nc|ENSG00000135457|Q12800-2|TFCP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.26953125	2	561.321317	1120.62808	0.32604	0.00018301	-0.099265	-5.5719E-05	0.22678	0.00012729	561.321325548247	68.268	0.58449	68.249	67.988	68.572	-0.019157					27	20	2	0	0	0	0.19839	1	17212	17212		28.487	16.847	1	446660	+		56756	15743	32490	32491	69558	69558					0.07259192891092425
VYQHLFTRI	9	Unmodified	_VYQHLFTRI_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8304443359375	2	588.82984	1175.64513	0.34775	0.00020477	0.36153	0.00021288	0.70929	0.00041765	588.830118108675	44.081	1.1681	44.081	43.793	44.961	0					106	42	4	0	0	0	0.0011116	1	9709	9709		121.35	71.792	1	3261500			56757	8553	32491	32492	69559	69559					0.0643311349688247
VYQHLFTRI	9	Unmodified	_VYQHLFTRI_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.7474975585938	2	588.82984	1175.64513	0.36494	0.00021489	0.44522	0.00026216	0.81016	0.00047705	588.8301793404977	43.741	1.2065	43.818	43.541	44.748	0.077518					117	44	4	0	0	0	0.18733	1	9857	9857		35.612	21.706	1	3438700			56758	8553	32491	32492	69560	69560					0.0643311349688247
VYQHLFTRI	9	Unmodified	_VYQHLFTRI_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.830322265625	2	588.82984	1175.64513	0.40803	0.00024026	0.43201	0.00025438	0.84004	0.00049464	588.8301316160887	43.748	1.1282	43.832	43.549	44.678	0.083992					106	41	4	0	0	0	0.044909	1	9594	9594		78.06	48.979	1	3217900			56759	8553	32491	32492	69561	69561					0.0643311349688247
VYQKIHNEKF	10	Unmodified	_VYQKIHNEKF_					0	0	0		ENSG00000186020|ENST00000591340|ZNF529	ENSG00000186020|ENST00000591340|ZNF529	ENSG00000186020|ENST00000591340|ZNF529	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.23736572265625	3	435.903183	1304.68772	-0.0053645	-2.3384E-06	-0.27947	-0.00012182	-0.28484	-0.00012416	436.23720700562114	22.06	0.65704	21.96	21.682	22.34	-0.10034					54	23	3	0	0	0	0.24548	1	3050	3050		27.088	16.189	1	257070			56760	7582	32492	32493	69562	69562					0.04756463834451097
VYQKLSIQL	9	Unmodified	_VYQKLSIQL_					0	0	0		ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6	ENSG00000112701|ENST00000447266|SENP6	ENSG00000112701|ENST00000447266|SENP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2794799804688	2	546.326599	1090.63865	0.69819	0.00038144	-0.60944	-0.00033295	0.088758	4.8491E-05	546.3260996680672	53.991	0.54702	53.991	53.749	54.296	0					45	19	3	0	0	0	0.11755	1	12786	12786		53.317	22.048	1	531410			56761	2455	32493	32494	69563	69563					0.09695175545539314
VYQKLSIQL	9	Unmodified	_VYQKLSIQL_					0	0	0		ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6	ENSG00000112701|ENST00000447266|SENP6	ENSG00000112701|ENST00000447266|SENP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.2796020507812	2	546.326599	1090.63865	0.59854	0.000327	-0.61795	-0.0003376	-0.019413	-1.0606E-05	546.326160637722	53.947	0.49898	54.004	53.766	54.265	0.056259					43	18	3	0	0	0	0.11755	1	12757	12757		53.317	15.141	1	579110			56762	2455	32493	32494	69564	69564					0.09695175545539314
VYQKLSIQL	9	Unmodified	_VYQKLSIQL_					0	0	0		ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6	ENSG00000112701|ENST00000447266|SENP6	ENSG00000112701|ENST00000447266|SENP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.2796630859375	2	546.326599	1090.63865	0.71965	0.00039317	-0.66984	-0.00036595	0.049812	2.7213E-05	546.3260386075791	54.099	0.4423	54.083	53.919	54.361	-0.015923					37	15	3	0	0	0	0.11755	1	12835	12835		53.317	22.048	1	569130			56763	2455	32493	32494	69565	69565					0.09695175545539314
VYQKTSGCLL	10	Unmodified	_VYQKTSGCLL_					0	0	0		ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.282470703125	2	556.294442	1110.57433	-0.027024	-1.5033E-05	-2.1138	-0.0011759	-2.1408	-0.0011909	556.2941671752172	39.466	0.80433	39.466	39.164	39.968	0					74	29	4	0	0	0	0.18562	1	8349	8349		34.402	0.18002	1	695080			56764	8128	32494	32495	69566	69566					0.02346652397068283
VYQKTSGCLL	10	Unmodified	_VYQKTSGCLL_					0	0	0		ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.282470703125	2	556.294442	1110.57433	0.29358	0.00016332	-2.6946	-0.001499	-2.401	-0.0013357	556.2939530130842	39.329	0.74047	39.429	39.128	39.868	0.099403					68	26	4	0	0	0	0.12843	1	8217	8217		41.84	3.8656	1	1032900			56765	8128	32494	32495	69567	69567					0.02346652397068283
VYQKYEPIF	9	Unmodified	_VYQKYEPIF_					0	0	0		ENSG00000155542|ENST00000285947|SETD9;nc|ENSG00000155542|Q8NE22-2|SETD9;ENST00000475908.5_1_5:56205193-56212726:+|nuORF	ENSG00000155542|ENST00000285947|SETD9	ENSG00000155542|ENST00000285947|SETD9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.2802124023438	2	593.810782	1185.60701	0.47647	0.00028293	0.42339	0.00025141	0.89986	0.00053434	593.810783229008	68.579	1.3745	68.579	67.911	69.285	0					81	50	2	0	0	0	0.21389	1	17225	17225		25.399	2.663	1	421800			56766	5181	32495	32496	69568	69568					0.02163182791559848
VYQKYEPIF	9	Unmodified	_VYQKYEPIF_					0	0	0		ENSG00000155542|ENST00000285947|SETD9;nc|ENSG00000155542|Q8NE22-2|SETD9;ENST00000475908.5_1_5:56205193-56212726:+|nuORF	ENSG00000155542|ENST00000285947|SETD9	ENSG00000155542|ENST00000285947|SETD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8107299804688	2	593.810782	1185.60701	0.42838	0.00025437	0.31091	0.00018462	0.73928	0.00043899	593.8106531244748	68.479	1.167	68.551	68.016	69.183	0.071938					90	42	3	0	0	0	0.11461	1	17240	17240		36.127	1.7253	1	415330			56767	5181	32495	32496	69569	69569					0.02163182791559848
VYQKYEPIF	9	Unmodified	_VYQKYEPIF_					0	0	0		ENSG00000155542|ENST00000285947|SETD9;nc|ENSG00000155542|Q8NE22-2|SETD9;ENST00000475908.5_1_5:56205193-56212726:+|nuORF	ENSG00000155542|ENST00000285947|SETD9	ENSG00000155542|ENST00000285947|SETD9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8110961914062	2	593.810782	1185.60701	0.45481	0.00027007	0.41556	0.00024676	0.87037	0.00051684	593.8107492385877	68.639	1.2541	68.62	67.808	69.062	-0.019157					90	44	3	0	0	0	0.14076	1	17216	17216		32.305	8.2849	1	443810			56768	5181	32495	32496	69570	69570					0.02163182791559848
VYQLLQSKS	9	Unmodified	_VYQLLQSKS_					0	0	0			REV__ENSG00000104738|ENST00000649973|MCM4	REV__ENSG00000104738|ENST00000649973|MCM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7992553710938	2	533.300581	1064.58661	0.63154	0.0003368	-0.76946	-0.00041035	-0.13791	-7.355E-05	533.2999991492574	57.023	0.8513	57.003	56.729	57.58	-0.019077					76	30	4	0	0	0	0.24688	1	13657	13657		14.838	4.7643	1	2929800	+		56769	14418	32496	32497	69571	69571					0.05690012131753974
VYQLRFQFL	9	Unmodified	_VYQLRFQFL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.3400268554688	2	607.340041	1212.66553	0.63403	0.00038507	-0.19396	-0.0001178	0.44007	0.00026727	607.3398035543399	74.382	0.63802	74.382	74.127	74.765	0					65	21	4	0	0	0	0.0010968	2	19079	19028;19079		149.99	119.29	1	2483100			56770	886	32497	32498	69572;69573	69573					0.06770284156687012
VYQLRFQFL	9	Unmodified	_VYQLRFQFL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.340087890625	2	607.340041	1212.66553	0.40859	0.00024815	-0.00082956	-5.0383E-07	0.40776	0.00024765	607.3399549538331	74.249	0.91475	74.301	74.031	74.946	0.052368					82	31	4	0	0	0	0.0010968	3	19000	19000;19048;19107		149.99	117.96	1	2637400			56771	886	32497	32498	69574;69575;69576	69574					0.06770284156687012
VYQLRFQFL	9	Unmodified	_VYQLRFQFL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.3401489257812	2	607.340041	1212.66553	0.42876	0.00026041	0.020735	1.2593E-05	0.4495	0.000273	607.3399533430942	74.393	0.93003	74.362	74.154	75.084	-0.030655					66	32	4	0	0	0	0.00019464	3	19071	19016;19071;19125		164.52	125.9	1	3034000			56772	886	32497	32498	69577;69578;69579	69578					0.06770284156687012
VYQLRHFSI	9	Unmodified	_VYQLRHFSI_					0	0	0		nc|ENSG00000102804|Q15714-2|TSC22D1	nc|ENSG00000102804|Q15714-2|TSC22D1	nc|ENSG00000102804|Q15714-2|TSC22D1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.79833984375	2	581.822015	1161.62948	0.54788	0.00031877	-1.2207	-0.00071021	-0.67278	-0.00039144	581.8209765219572	47.452	0.33183	47.452	47.302	47.634	0					19	11	2	0	0	0	0.12056	1	10762	10762		51.415	28.679	1	285300			56773	12629	32498	32499	69580	69580					0.05512826979838792
VYQLRHFSI	9	Unmodified	_VYQLRHFSI_					0	0	0		nc|ENSG00000102804|Q15714-2|TSC22D1	nc|ENSG00000102804|Q15714-2|TSC22D1	nc|ENSG00000102804|Q15714-2|TSC22D1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	581.822015	1161.62948	0.26145	0.00015212	-0.087635	-5.0988E-05	0.17382	0.00010113	581.8217099813277	47.299	0.37577	47.352	47.168	47.544	0.05257	-0.04992	0.00041562	NaN	43.982	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253040			56774	12629	32498	32499							0.05512826979838792
VYQMILECGGS	11	Unmodified	_VYQMILECGGS_					0	0	0		ENSG00000181085|ENST00000338033|MAPK15	ENSG00000181085|ENST00000338033|MAPK15	ENSG00000181085|ENST00000338033|MAPK15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.274658203125	2	600.275392	1198.53623	0.33171	0.00019912	-1.3501	-0.00081043	-1.0184	-0.00061131	600.2744512117874	37.959	0.64127	38.056	37.796	38.437	0.097527					51	22	3	0	0	0	0.18241	1	7875	7875		32.786	1.5173	1	575080			56775	7222	32499	32500	69581	69581					-0.0550960157991085
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.7948608398438	2	569.293622	1136.57269	0.24162	0.00013755	-0.62602	-0.00035639	-0.3844	-0.00021884	569.29360670369	21.707	0.61572	21.707	21.401	22.017	0					37	22	2	0	0	0	0.023967	2	2930	2885;2930		62.573	44.2	1	148930			56776	1637	32500	32501	69582;69583	69583					0.009867794233286986
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.2938232421875	2	569.293622	1136.57269	0.43746	0.00024904	-0.81208	-0.00046231	-0.37463	-0.00021327	569.2934114884763	21.759	0.60375	21.658	21.364	21.968	-0.10034					32	21	2	0	0	0	0.017391	1	2942	2942		68.081	48.824	1	165970			56777	1637	32500	32501	69584	69584					0.009867794233286986
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.29345703125	2	569.293622	1136.57269	0.21367	0.00012164	-1.0085	-0.00057412	-0.79481	-0.00045248	569.2933205675621	21.671	0.59866	21.622	21.373	21.972	-0.049377					33	21	2	0	0	0	0.012929	1	2915	2915		74.929	58.78	1	158170			56778	1637	32500	32501	69585	69585					0.009867794233286986
VYQSKPATL	9	Unmodified	_VYQSKPATL_					0	0	0		nc|ENSG00000141219|Q9BSJ5-2|MTNAP1;nc|ENSG00000141219|Q9BSJ5-3|MTNAP1;ENSG00000141219|ENST00000535032|C17orf80	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.7657470703125	2	503.782025	1005.5495	0.095834	4.8279E-05	-1.0525	-0.00053022	-0.95665	-0.00048194	503.78125558960204	27.618	0.46011	27.618	27.354	27.814	0					28	15	2	0	0	0	0.16039	1	4720	4720		42.312	19.576	1	146440			56779	4359	32501	32502	69586	69586					0.04694340586001999
VYQSKPATL	9	Unmodified	_VYQSKPATL_					0	0	0		nc|ENSG00000141219|Q9BSJ5-2|MTNAP1;nc|ENSG00000141219|Q9BSJ5-3|MTNAP1;ENSG00000141219|ENST00000535032|C17orf80	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7816467285156	2	503.782025	1005.5495	0.033416	1.6834E-05	-0.99949	-0.00050353	-0.96608	-0.00048669	503.7816006780225	27.587	0.45483	27.565	27.321	27.776	-0.021412					28	15	2	0	0	0	0.059067	1	4706	4706		49.527	19.302	1	179670			56780	4359	32501	32502	69587	69587					0.04694340586001999
VYQSKPATL	9	Unmodified	_VYQSKPATL_					0	0	0		nc|ENSG00000141219|Q9BSJ5-2|MTNAP1;nc|ENSG00000141219|Q9BSJ5-3|MTNAP1;ENSG00000141219|ENST00000535032|C17orf80	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.7817077636719	2	503.782025	1005.5495	0.020198	1.0175E-05	-0.99984	-0.0005037	-0.97965	-0.00049353	503.7815165030644	27.569	0.60282	27.558	27.29	27.893	-0.01156					31	20	2	0	0	0	0.053988	1	4688	4688		51.415	22.334	1	240750			56781	4359	32501	32502	69588	69588					0.04694340586001999
VYQSLANLI	9	Unmodified	_VYQSLANLI_					0	0	0		nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;ENST00000481260.1_1_9:134504569-134518759:-|nuORF	nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.7900695800781	2	510.78985	1019.56515	0.1621	8.2799E-05	-0.18042	-9.2156E-05	-0.018319	-9.3571E-06	510.7898023561277	73.948	0.7111	73.948	73.632	74.343	0					47	23	3	0	0	0	0.0010968	1	18911	18911		121.53	52.429	1	1054000			56782	2119	32502	32503	69589	69589					0.056146271030456774
VYQSLANLI	9	Unmodified	_VYQSLANLI_					0	0	0		nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;ENST00000481260.1_1_9:134504569-134518759:-|nuORF	nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.7898254394531	2	510.78985	1019.56515	0.18503	9.4514E-05	-0.19602	-0.00010013	-0.010987	-5.6122E-06	510.789835524895	73.883	0.60713	73.935	73.661	74.268	0.052368					43	20	3	0	0	0	0.0010968	1	18897	18897		121.53	56.299	1	1324500			56783	2119	32502	32503	69590	69590					0.056146271030456774
VYQSLANLI	9	Unmodified	_VYQSLANLI_					0	0	0		nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;ENST00000481260.1_1_9:134504569-134518759:-|nuORF	nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.78985595703125	2	510.78985	1019.56515	0.19273	9.8443E-05	-0.20133	-0.00010284	-0.0086009	-4.3933E-06	510.7898370986499	74.016	0.54509	73.985	73.666	74.211	-0.030663					36	19	2	0	0	0	0.001957	1	18924	18924		110.55	58.923	1	1009100			56784	2119	32502	32503	69591	69591					0.056146271030456774
VYQYIQLF	8	Unmodified	_VYQYIQLF_					0	0	0			REV__nc|ENSG00000164741|Q96QB1-6|DLC1	REV__nc|ENSG00000164741|Q96QB1-6|DLC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7107543945312	2	537.286943	1072.55933	0.37985	0.00020409	-0.84076	-0.00045173	-0.46092	-0.00024764	537.7877276319324	66.66	0.84152	66.744	66.518	67.36	0.083832					43	29	2	0	0	0	0.33245	1	16789	16789		19.439	1.304	1	208630	+		56785	23067	32503	32504	69592	69592					0.0259552859138239
VYQYMHETI	9	Oxidation (M)	_VYQYM(Oxidation (M))HETI_		VYQYM(1)HETI		VYQYM(96)HETI	0	0	1		ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.2738037109375	2	600.273706	1198.53286	0.85005	0.00051026	-0.37204	-0.00022332	0.47801	0.00028694	600.2734032380482	37.549	0.51059	37.549	37.285	37.795	0					35	17	3	0	0	0	0.0037449	1	7741	7741		96.367	70.967	1	371560			56786	2344	32504	32505	69593	69593		288			-0.058465283622808784
VYQYMHETI	9	Oxidation (M)	_VYQYM(Oxidation (M))HETI_		VYQYM(1)HETI		VYQYM(110)HETI	0	0	1		ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.2747802734375	2	600.273706	1198.53286	0.48047	0.00028842	1.102	0.00066152	1.5825	0.00094993	600.2743136582437	38.087	0.58826	38.087	37.846	38.434	0					44	20	3	0	0	0	0.0024096	1	7929	7929		106.94	74.635	1	588350			56787	2344	32504	32505	69594	69594		288			-0.058465283622808784
VYQYMHETI	9	Oxidation (M)	_VYQYM(Oxidation (M))HETI_		VYQYM(1)HETI		VYQYM(110)HETI	0	0	1		ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.2738037109375	2	600.273706	1198.53286	0.56332	0.00033815	0.11445	6.8702E-05	0.67777	0.00040685	600.273610294968	37.407	0.48812	37.495	37.305	37.793	0.08741					38	17	3	0	0	0	0.0024096	1	7709	7709		106.94	81.541	1	499840			56788	2344	32504	32505	69595	69595		288			-0.058465283622808784
VYQYMHETI	9	Oxidation (M)	_VYQYM(Oxidation (M))HETI_		VYQYM(1)HETI		VYQYM(110)HETI	0	0	1		ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.2745971679688	2	600.273706	1198.53286	0.56549	0.00033945	1.2717	0.00076337	1.8372	0.0011028	600.2743114646662	37.975	0.65876	38.066	37.796	38.455	0.090881					50	23	3	0	0	0	0.0024096	1	7886	7886		106.94	74.635	1	614960			56789	2344	32504	32505	69596	69596		288			-0.058465283622808784
VYQYMHETI	9	Oxidation (M)	_VYQYM(Oxidation (M))HETI_		VYQYM(1)HETI		VYQYM(100)HETI	0	0	1		ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	ENSG00000111052|ENST00000552864|LIN7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.2740478515625	2	600.273706	1198.53286	0.42536	0.00025533	0.12441	7.4679E-05	0.54977	0.00033001	600.2736637560607	37.372	0.48766	37.465	37.275	37.763	0.093018					30	17	2	0	0	0	0.003317	1	7694	7694		99.755	74.356	1	397050			56790	2344	32504	32505	69597	69597		288			-0.058465283622808784
VYRCRKLF	8	Unmodified	_VYRCRKLF_					0	0	0		ENST00000489033.5_1_X:110924556-110931204:+|nuORF	ENST00000489033.5_1_X:110924556-110931204:+|nuORF	ENST00000489033.5_1_X:110924556-110931204:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8082275390625	2	542.807854	1083.60115	0.6925	0.00037589	-0.1848	-0.00010031	0.5077	0.00027558	542.8074746075	76.527	1.1572	76.495	75.803	76.96	-0.031487					78	42	3	0	0	0	0.43455	1	19795	19795		11.114	1.767	1	439240			56791	11143	32505	32506	69598	69598					0.06269805798888228
VYREYTDASF	10	Unmodified	_VYREYTDASF_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENST00000489736.5_1_3:148904295-148925363:-|nuORF;CON__ENSEMBL:ENSBTAP00000031900	ENSG00000047457|ENST00000264613|CP;CON__ENSEMBL:ENSBTAP00000031900	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.7869262695312	2	625.788035	1249.56152	0.33233	0.00020797	-1.4785	-0.0009252	-1.1461	-0.00071723	625.7861938915078	42.884	1.631	42.884	42.624	44.255	0					133	59	6	0	0	0	0.00041966	3	9351	9351;9399;9441		128.58	95.793	1	6223600		+	56792	632;203	32506	32507	69599;69600;69601	69599					-0.053280874614983986
VYREYTDASF	10	Unmodified	_VYREYTDASF_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENST00000489736.5_1_3:148904295-148925363:-|nuORF;CON__ENSEMBL:ENSBTAP00000031900	ENSG00000047457|ENST00000264613|CP;CON__ENSEMBL:ENSBTAP00000031900	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.7884521484375	2	625.788035	1249.56152	-0.064042	-4.0076E-05	-0.70636	-0.00044203	-0.7704	-0.00048211	625.7869046850963	42.478	1.5029	42.563	42.295	43.798	0.085201					109	54	4	0	0	0	2.8213E-05	3	9222	9222;9270;9318		139.38	99.428	1	6541000		+	56793	632;203	32506	32507	69602;69603;69604	69602					-0.053280874614983986
VYREYTDASF	10	Unmodified	_VYREYTDASF_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENST00000489736.5_1_3:148904295-148925363:-|nuORF;CON__ENSEMBL:ENSBTAP00000031900	ENSG00000047457|ENST00000264613|CP;CON__ENSEMBL:ENSBTAP00000031900	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.7882080078125	2	625.788035	1249.56152	0.14335	8.9705E-05	-0.40956	-0.0002563	-0.26621	-0.00016659	625.7873272870829	42.412	1.1043	42.504	42.23	43.334	0.091362					79	39	3	0	0	0	2.8213E-05	3	9233	9190;9233;9286		139.38	99.428	1	6256400		+	56794	632;203	32506	32507	69605;69606;69607	69606					-0.053280874614983986
VYRGLHPV	8	Unmodified	_VYRGLHPV_					0	0	0			REV__nc|ENSG00000053747|Q16787-3|LAMA3	REV__nc|ENSG00000053747|Q16787-3|LAMA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.7821960449219	2	470.771794	939.529036	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.39	1	36.39	35.89	36.89	0								0	0	0	0.35251	1	7388	7388		13.508	0.97634	1		+		56795	13579	32507	32508	69608	69608					0.05685214716845621
VYRGSSEPV	9	Unmodified	_VYRGSSEPV_					0	0	0			REV__ENST00000588523.1_1_19:14071181-14071804:+|nuORF	REV__ENST00000588523.1_1_19:14071181-14071804:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.27197265625	2	497.253631	992.49271	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.988	1	45.057	44.557	45.557	0.068569								0	0	0	0.21353	1	10015	10015		18.146	0	1		+		56796	15548	32508	32509	69609	69609					-0.003837069705241447
VYRIHSVL	8	Unmodified	_VYRIHSVL_					0	0	0		ENST00000476331.5_1_3:12776275-12782752:-|nuORF;nc|ENSG00000088726|Q8WWA1-3|TMEM40;nc|ENSG00000088726|Q8WWA1-2|TMEM40;ENSG00000088726|ENST00000314124|TMEM40	ENST00000476331.5_1_3:12776275-12782752:-|nuORF	ENST00000476331.5_1_3:12776275-12782752:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7930603027344	2	493.792727	985.5709	0.53121	0.00026231	0.33257	0.00016422	0.86378	0.00042653	493.7929652698482	57.158	0.61641	57.158	56.908	57.525	0					71	22	4	0	0	0	0.30517	1	13766	13766		30.225	2.0516	1	1396100			56797	1326	32509	32510	69610	69610					0.07753770405372507
VYRILFFLF	9	Unmodified	_VYRILFFLF_					0	0	0		ENST00000503787.5_1_5:54460591-54460681:+|nuORF	ENST00000503787.5_1_5:54460591-54460681:+|nuORF	ENST00000503787.5_1_5:54460591-54460681:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	407.2628479003906	3	406.574227	1216.70085	-0.0033477	-1.3611E-06	0.81578	0.00033167	0.81243	0.00033031	406.9090806876261	32.498	0.2394	32.552	32.364	32.603	0.054375					10	8	2	0	0	0	0.259	1	6155	6155		5.2969	2.8621	1	34096			56798	11295	32510	32511	69611	69611					0.10116946684524919
VYRKKYVI	8	Unmodified	_VYRKKYVI_					0	0	0		ENST00000584906.5_1_17:8280884-8283916:-|nuORF;ENST00000415894.1_1_1:165788676-165788994:+|nuORF;ENST00000602923.1_1_11:2356544-2356979:-|nuORF;ENSG00000161970|ENST00000648839|RPL26;ENSG00000037241|ENST00000265100|RPL26L1	ENST00000584906.5_1_17:8280884-8283916:-|nuORF	ENST00000584906.5_1_17:8280884-8283916:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7772827148438	2	534.831852	1067.64915	0.33205	0.00017759	2.7099	0.0014493	3.0419	0.0016269	534.8333080724242	57.066	0.38597	57.145	57.011	57.397	0.078674					20	13	2	0	0	0	0.34319	1	13709	13709		5.7604	0	1	108170			56799	583	32511	32512	69612	69612					0.11803202990608952
VYRLTLVKA	9	Unmodified	_VYRLTLVKA_					0	0	0		ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7505493164062	2	531.837134	1061.65972	1.0186	0.00054175	0.24346	0.00012948	1.2621	0.00067123	531.8371884604755	33.805	0.33559	33.872	33.704	34.04	0.06636					16	11	3	0	0	0	0.25346	1	6594	6594		10.8	2.644	1	127510			56800	8148	32512	32513	69613	69613					0.13135185645046477
VYRLTLVKA	9	Unmodified	_VYRLTLVKA_					0	0	0		ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	ENSG00000198874|ENST00000359626|TYW1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7504272460938	2	531.837134	1061.65972	0.33271	0.00017695	0.75766	0.00040295	1.0904	0.0005799	531.8375066276352	33.73	0.36197	33.797	33.685	34.047	0.066704					20	12	2	0	0	0	0.25346	1	6594	6594		10.8	2.644	1	93270			56801	8148	32512	32513	69614	69614					0.13135185645046477
VYRNKDALSHF	11	Unmodified	_VYRNKDALSHF_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.5700378417969	3	450.570204	1348.68878	-0.1185	-5.3392E-05	-0.25916	-0.00011677	-0.37766	-0.00017016	450.57004966513045	27.821	0.76756	27.821	27.474	28.241	0					66	26	3	0	0	0	0.0060097	1	4762	4762		78.116	60.673	1	664340			56802	2536	32513	32514	69615	69615					0.02838678203352174
VYRNKDALSHF	11	Unmodified	_VYRNKDALSHF_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.5698547363281	3	450.570204	1348.68878	-0.16816	-7.5767E-05	-0.19436	-8.7574E-05	-0.36252	-0.00016334	450.57004464552165	27.802	0.79243	27.78	27.437	28.23	-0.021412					79	27	4	0	0	0	0.00042144	1	4769	4769		104.94	87.501	1	703630			56803	2536	32513	32514	69616	69616					0.02838678203352174
VYRNKDALSHF	11	Unmodified	_VYRNKDALSHF_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.5699768066406	3	450.570204	1348.68878	-0.20518	-9.2449E-05	-0.0945	-4.2579E-05	-0.29968	-0.00013503	450.57009332717126	27.809	0.78421	27.798	27.555	28.34	-0.010925					74	27	4	0	0	0	0.001645	1	4750	4750		87.878	75.006	1	761600			56804	2536	32513	32514	69617	69617					0.02838678203352174
VYRPDHLTASL	11	Unmodified	_VYRPDHLTASL_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.56298828125	3	424.562938	1270.66699	-0.12746	-5.4113E-05	0.041903	1.779E-05	-0.085553	-3.6323E-05	424.5629679859468	31.676	0.36671	31.719	31.543	31.909	0.042364					28	12	3	0	0	0	0.36722	1	5966	5966		15.538	2.6825	1	862090	+		56805	14196	32514	32515	69618	69618					0.04247873454801265
VYRPDHLTASL	11	Unmodified	_VYRPDHLTASL_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	424.562938	1270.66699	-0.14112	-5.9914E-05	0.15679	6.6569E-05	0.015675	6.6549E-06	424.5630844420906	31.66	0.44963	31.66	31.476	31.925	0	-0.0058651	0.0001734	NaN	15.538	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	692370	+		56806	14196	32514	32515							0.04247873454801265
VYRPDHLTASL	11	Unmodified	_VYRPDHLTASL_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	424.562938	1270.66699	-0.12746	-5.4113E-05	0.041903	1.779E-05	-0.085553	-3.6323E-05	424.5629679859468	31.676	0.36671	31.719	31.543	31.909	0.042364	0.052964	2.7065E-05	NaN	15.538	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	862090	+		56807	14196	32514	32515							0.04247873454801265
VYRPDHLTASL	11	Unmodified	_VYRPDHLTASL_					0	0	0			REV__ENSG00000100426|ENST00000216268|ZBED4	REV__ENSG00000100426|ENST00000216268|ZBED4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	424.562938	1270.66699	-0.033585	-1.4259E-05	-0.1802	-7.6507E-05	-0.21379	-9.0766E-05	424.89715845951446	31.578	0.44526	31.619	31.419	31.864	0.040991	-0.047098	-0.00025583	NaN	15.538	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	571290	+		56808	14196	32514	32515							0.04247873454801265
VYRRFRHGF	9	Unmodified	_VYRRFRHGF_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.228271484375	3	413.228224	1236.66284	0.25956	0.00010726	-0.44172	-0.00018253	-0.18216	-7.5272E-05	413.22805913811266	21.985	0.72635	21.885	21.557	22.284	-0.10034					52	26	2	0	0	0	0.27726	2	2996	2996;3030		12.241	6.0488	1	215310			56809	4659	32515	32516	69619;69620	69619					0.05397873542392517
VYRRFRHGF	9	Unmodified	_VYRRFRHGF_					0	0	0		ENSG00000145592|ENST00000274242|RPL37;ENST00000504562.1_1_5:40832608-40835123:-|nuORF	ENSG00000145592|ENST00000274242|RPL37	ENSG00000145592|ENST00000274242|RPL37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.22784423828125	3	413.228224	1236.66284	0.085512	3.5336E-05	-0.36469	-0.0001507	-0.27918	-0.00011536	413.22803642736375	21.914	0.77069	21.864	21.633	22.404	-0.049377					49	27	2	0	0	0	0.27726	1	2996	2996		12.241	6.0488	1	219090			56810	4659	32515	32516	69621	69621					0.05397873542392517
VYRRGLLVK	9	Unmodified	_VYRRGLLVK_					0	0	0			REV__ENST00000467575.1_1_21:34900776-34900890:-|nuORF	REV__ENST00000467575.1_1_21:34900776-34900890:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.7843627929688	2	552.356025	1102.6975	0.18707	0.00010333	2.3446	0.001295	2.5317	0.0013984	552.354704483252	52.36	0.16475	52.359	52.305	52.469	-0.00081253					9	5	3	0	0	0	0.25879	1	12300	12300		4.756	3.1034	1	105070	+		56811	21303	32516	32517	69622	69622					0.15025696630527818
VYRSNCRQTE	10	Unmodified	_VYRSNCRQTE_					0	0	0			REV__ENSG00000184012|ENST00000332149|TMPRSS2	REV__ENSG00000184012|ENST00000332149|TMPRSS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.8747253417969	3	419.199783	1254.57752	-0.1849	-7.7508E-05	-2.2208	-0.00093097	-2.4057	-0.0010085	419.53474482389186	31.167	0.58381	31.167	30.81	31.394	0					53	20	4	0	0	0	0.35961	1	5787	5787		10.899	1.1347	1	211520	+		56812	18298	32517	32518	69623	69623					-0.03958704496244536
VYRTVIEYY	9	Unmodified	_VYRTVIEYY_					0	0	0		ENSG00000173418|ENST00000334982|NAA20	ENSG00000173418|ENST00000334982|NAA20	ENSG00000173418|ENST00000334982|NAA20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.3140869140625	2	603.313689	1204.61282	0.92958	0.00056083	-0.15941	-9.6173E-05	0.77017	0.00046465	603.3135541581871	50.664	0.94743	50.664	50.407	51.354	0					94	34	5	0	0	0	0.0013924	2	11787	11740;11787		117.76	81.634	1	2995600			56813	6721	32518	32519	69624;69625	69625					0.0187028130321778
VYRTVIEYY	9	Unmodified	_VYRTVIEYY_					0	0	0		ENSG00000173418|ENST00000334982|NAA20	ENSG00000173418|ENST00000334982|NAA20	ENSG00000173418|ENST00000334982|NAA20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3140258789062	2	603.313689	1204.61282	0.98449	0.00059396	-0.26506	-0.00015991	0.71944	0.00043405	603.3134790812769	50.667	0.86666	50.712	50.403	51.27	0.044891					95	31	5	0	0	0	0.0041491	2	11765	11719;11765		93.166	57.25	1	2471500			56814	6721	32518	32519	69626;69627	69627					0.0187028130321778
VYRTVIEYY	9	Unmodified	_VYRTVIEYY_					0	0	0		ENSG00000173418|ENST00000334982|NAA20	ENSG00000173418|ENST00000334982|NAA20	ENSG00000173418|ENST00000334982|NAA20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.31396484375	2	603.313689	1204.61282	0.8183	0.00049369	-0.056612	-3.4155E-05	0.76169	0.00045954	603.3136114715189	50.721	0.97578	50.73	50.426	51.402	0.0095634					103	36	4	0	0	0	0.00051734	2	11780	11736;11780		128.93	81.184	1	2784100			56815	6721	32518	32519	69628;69629	69629					0.0187028130321778
VYRVLYNF	8	Unmodified	_VYRVLYNF_					0	0	0		ENST00000422447.7_1_11:18429066-18429312:+|nuORF	ENST00000422447.7_1_11:18429066-18429312:+|nuORF	ENST00000422447.7_1_11:18429066-18429312:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2955932617188	2	537.292559	1072.57057	0.48069	0.00025827	0.40866	0.00021957	0.88935	0.00047784	537.2926904541879	67.9	1.5742	67.978	67.213	68.788	0.078041					115	56	3	0	0	0	0.42446	1	17212	17212		14.582	2.9414	1	2699000			56816	10381	32519	32520	69630	69630					0.037183506854944426
VYRVYVATF	9	Unmodified	_VYRVYVATF_					0	0	0		ENSG00000197217|ENST00000358689|ENTPD4;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENSG00000197217|ENST00000358689|ENTPD4	ENSG00000197217|ENST00000358689|ENTPD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.3057861328125	2	559.305667	1116.59678	0.7408	0.00041433	-0.88527	-0.00049514	-0.14447	-8.0802E-05	559.3050720054499	56.271	0.5084	56.271	56.101	56.61	0					47	18	3	0	0	0	0.00033443	2	13562	13512;13562		131.27	91.31	1	1529800			56817	7944	32520	32521	69631;69632	69632					0.04314619856972968
VYRVYVATF	9	Unmodified	_VYRVYVATF_					0	0	0		ENSG00000197217|ENST00000358689|ENTPD4;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENSG00000197217|ENST00000358689|ENTPD4	ENSG00000197217|ENST00000358689|ENTPD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.3056030273438	2	559.305667	1116.59678	0.85407	0.00047769	-0.8406	-0.00047015	0.013475	7.5369E-06	559.305054178372	56.233	0.95136	56.312	56.117	57.068	0.078674					57	35	3	0	0	0	0.00070271	2	13471	13471;13522		126.57	86.609	1	2012400			56818	7944	32520	32521	69633;69634	69633					0.04314619856972968
VYRVYVATF	9	Unmodified	_VYRVYVATF_					0	0	0		ENSG00000197217|ENST00000358689|ENTPD4;nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF	ENSG00000197217|ENST00000358689|ENTPD4	ENSG00000197217|ENST00000358689|ENTPD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.3054809570312	2	559.305667	1116.59678	0.93482	0.00052285	-0.75397	-0.0004217	0.18085	0.00010115	559.3051110738564	56.402	0.65214	56.383	56.213	56.865	-0.019081					51	23	3	0	0	0	0.00070271	1	13545	13545		126.57	86.609	1	1910800			56819	7944	32520	32521	69635	69635					0.04314619856972968
VYRVYVTTF	9	Unmodified	_VYRVYVTTF_					0	0	0		ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2538452148438	2	574.310949	1146.60735	0.57203	0.00032852	-0.53429	-0.00030685	0.037737	2.1673E-05	574.310655543104	55.276	0.42508	55.347	55.14	55.565	0.070885					32	15	3	0	0	0	0.059216	1	13140	13140		69.105	38.468	1	442030			56820	8026	32521	32522	69636	69636					0.03990602511407815
VYRVYVTTF	9	Unmodified	_VYRVYVTTF_					0	0	0		ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.2535400390625	2	574.310949	1146.60735	0.21909	0.00012583	-0.056526	-3.2464E-05	0.16256	9.3362E-05	574.3108664136669	55.506	0.43579	55.487	55.235	55.671	-0.019077					30	15	3	0	0	0	0.20881	1	13204	13204		27.629	21.897	1	547450			56821	8026	32521	32522	69637	69637					0.03990602511407815
VYRVYVTTF	9	Unmodified	_VYRVYVTTF_					0	0	0		ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	ENSG00000198018|ENST00000370489|ENTPD7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	574.310949	1146.60735	0.19183	0.00011017	-0.025879	-1.4862E-05	0.16595	9.5308E-05	574.3110406853377	55.333	0.41986	55.333	55.119	55.539	0	-0.056271	0.00015285	NaN	69.105	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437660			56822	8026	32521	32522							0.03990602511407815
VYRYLLSEK	9	Unmodified	_VYRYLLSEK_					0	0	0		nc|ENSG00000101194|Q9BYT1-3|SLC17A9;ENST00000488738.5_1_20:61584086-61594126:+|nuORF;nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9	nc|ENSG00000101194|Q9BYT1-3|SLC17A9	nc|ENSG00000101194|Q9BYT1-3|SLC17A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.80810546875	2	585.829506	1169.64446	-0.66898	-0.00039191	0.011987	7.0224E-06	-0.657	-0.00038489	585.8294766134618	34.916	0.44629	34.993	34.807	35.254	0.077377					32	15	3	0	0	0	0.24993	1	6898	6898		13.042	0	1	194260			56823	1674	32522	32523	69638	69638					0.06642274057185205
VYSAAILEYL	10	Unmodified	_VYSAAILEYL_					0	0	0		nc|ENSG00000105968|Q71UI9-4|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF;nc|ENSG00000105968|Q71UI9-5|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENST00000511348.1_1_4:100870420-100870579:-|nuORF;ENST00000511203.1_1_4:100869836-100870579:-|nuORF	nc|ENSG00000105968|Q71UI9-4|H2AZ2;ENST00000511348.1_1_4:100870420-100870579:-|nuORF	nc|ENSG00000105968|Q71UI9-4|H2AZ2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.3104858398438	2	571.310615	1140.60668	0.41203	0.00023539	-0.48366	-0.00027632	-0.071631	-4.0923E-05	571.3098584704352	87.04	1.4456	87.04	86.305	87.75	0					99	61	3	0	0	0	0.19885	1	22912	22912		32.786	4.2912	1	577430			56824	2041;11382	32523	32524	69639	69639					0.041997630717105494
VYSAAILEYL	10	Unmodified	_VYSAAILEYL_					0	0	0		nc|ENSG00000105968|Q71UI9-4|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF;nc|ENSG00000105968|Q71UI9-5|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENST00000511348.1_1_4:100870420-100870579:-|nuORF;ENST00000511203.1_1_4:100869836-100870579:-|nuORF	nc|ENSG00000105968|Q71UI9-4|H2AZ2;ENST00000511348.1_1_4:100870420-100870579:-|nuORF	nc|ENSG00000105968|Q71UI9-4|H2AZ2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.3109130859375	2	571.310615	1140.60668	0.42039	0.00024017	-0.30802	-0.00017598	0.11236	6.4195E-05	571.3099056450988	86.845	1.7371	86.932	86.261	87.998	0.087097					111	79	3	0	0	0	0.20505	1	22861	22861		47.749	5.7931	1	633070			56825	2041;11382	32523	32524	69640	69640					0.041997630717105494
VYSAAILEYL	10	Unmodified	_VYSAAILEYL_					0	0	0		nc|ENSG00000105968|Q71UI9-4|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF;nc|ENSG00000105968|Q71UI9-5|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENST00000511348.1_1_4:100870420-100870579:-|nuORF;ENST00000511203.1_1_4:100869836-100870579:-|nuORF	nc|ENSG00000105968|Q71UI9-4|H2AZ2;ENST00000511348.1_1_4:100870420-100870579:-|nuORF	nc|ENSG00000105968|Q71UI9-4|H2AZ2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3109130859375	2	571.310615	1140.60668	0.37724	0.00021552	-0.2298	-0.00013128	0.14745	8.4239E-05	571.3100213005814	87.071	1.8419	87.065	86.286	88.128	-0.0056229					123	84	3	0	0	0	0.23542	1	22944	22944		39.95	5.0176	1	584770			56826	2041;11382	32523	32524	69641	69641					0.041997630717105494
VYSCLEKYGST	11	Unmodified	_VYSCLEKYGST_					0	0	0			REV__ENST00000509490.5_1_4:55145100-55147845:+|nuORF	REV__ENST00000509490.5_1_4:55145100-55147845:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.8098754882812	2	625.292096	1248.56964	0.51096	0.0003195	0.70345	0.00043986	1.2144	0.00075936	625.2924459709105	53.517	0.39027	53.517	53.358	53.749	0					19	14	2	0	0	0	0.30767	1	12668	12668		21.537	7.6309	1	216560	+		56827	21791	32524	32525	69642	69642					-0.04470276536358142
VYSDYLQTI	9	Unmodified	_VYSDYLQTI_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.2770385742188	2	551.276772	1100.53899	0.60403	0.00033299	-0.21466	-0.00011834	0.38938	0.00021465	551.2765290077043	65.72	0.93789	65.72	65.431	66.369	0					83	33	4	0	0	0	3.6949E-07	1	16413	16413		165.72	109.54	1	1892100			56828	7141	32525	32526	69643	69643					-0.0072568685909573105
VYSDYLQTI	9	Unmodified	_VYSDYLQTI_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.277099609375	2	551.276772	1100.53899	0.407	0.00022437	0.033604	1.8525E-05	0.44061	0.0002429	551.2766644181625	65.571	1.1693	65.66	65.38	66.549	0.088882					88	42	4	0	0	0	3.6949E-07	2	16366	16366;16421		165.72	113.45	1	2135500			56829	7141	32525	32526	69644;69645	69644					-0.0072568685909573105
VYSDYLQTI	9	Unmodified	_VYSDYLQTI_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.2771606445312	2	551.276772	1100.53899	0.54395	0.00029987	-0.15573	-8.5851E-05	0.38822	0.00021402	551.2765947560459	65.698	0.85474	65.686	65.398	66.253	-0.011337					75	30	4	0	0	0	2.5511E-05	1	16401	16401		152.89	105.14	1	2099800			56830	7141	32525	32526	69646	69646					-0.0072568685909573105
VYSDYVNNF	9	Unmodified	_VYSDYVNNF_					0	0	0		ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L	ENST00000469726.5_1_1:17942561-18023872:+|nuORF	ENST00000469726.5_1_1:17942561-18023872:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8159790039062	2	560.750921	1119.48729	0.27667	0.00015514	0.17427	9.7724E-05	0.45094	0.00025287	560.7509473318662	57.997	0.64469	57.997	57.768	58.413	0					53	22	3	0	0	0	0.00058103	1	14038	14038		129.77	93.728	1	735060			56831	1033	32526	32527	69647	69647					-0.06767430553009035
VYSDYVNNF	9	Unmodified	_VYSDYVNNF_					0	0	0		ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L	ENST00000469726.5_1_1:17942561-18023872:+|nuORF	ENST00000469726.5_1_1:17942561-18023872:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8157348632812	2	560.750921	1119.48729	0.37989	0.00021302	0.037894	2.1249E-05	0.41779	0.00023427	560.7509965942268	57.813	0.68092	57.899	57.598	58.279	0.085621					62	24	4	0	0	0	0.0045335	1	13981	13981		106.94	85.194	1	887950			56832	1033	32526	32527	69648	69648					-0.06767430553009035
VYSDYVNNF	9	Unmodified	_VYSDYVNNF_					0	0	0		ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L	ENST00000469726.5_1_1:17942561-18023872:+|nuORF	ENST00000469726.5_1_1:17942561-18023872:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7511596679688	2	560.750921	1119.48729	0.49352	0.00027674	0.069363	3.8895E-05	0.56288	0.00031564	560.750846243626	58.167	0.61837	58.15	57.848	58.467	-0.0172					54	22	3	0	0	0	0.0024096	1	14086	14086		106.94	78.453	1	1022300			56833	1033	32526	32527	69649	69649					-0.06767430553009035
VYSEAARVLQF	11	Unmodified	_VYSEAARVLQF_					0	0	0		nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000560119.5_1_15:49584731-49620353:+|nuORF	nc|ENSG00000156958|Q01415-2|GALK2	nc|ENSG00000156958|Q01415-2|GALK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8430786132812	2	641.843145	1281.67174	0.27688	0.00017771	-0.25996	-0.00016685	0.016923	1.0862E-05	641.8432144959028	59.353	0.62145	59.353	59.081	59.702	0					54	21	4	0	0	0	0.082134	1	14442	14442		72.59	44.961	1	651710			56834	5268	32527	32528	69650	69650					0.04216757597555443
VYSEAARVLQF	11	Unmodified	_VYSEAARVLQF_					0	0	0		nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000560119.5_1_15:49584731-49620353:+|nuORF	nc|ENSG00000156958|Q01415-2|GALK2	nc|ENSG00000156958|Q01415-2|GALK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	641.8430786132812	2	641.843145	1281.67174	0.45364	0.00029117	-0.45731	-0.00029352	-0.0036665	-2.3533E-06	641.8430088449471	59.182	0.53186	59.274	59.015	59.547	0.091301					45	18	3	0	0	0	0.035374	1	14381	14381		89.609	53.102	1	736510			56835	5268	32527	32528	69651	69651					0.04216757597555443
VYSEAARVLQF	11	Unmodified	_VYSEAARVLQF_					0	0	0		nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000560119.5_1_15:49584731-49620353:+|nuORF	nc|ENSG00000156958|Q01415-2|GALK2	nc|ENSG00000156958|Q01415-2|GALK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8433837890625	2	641.843145	1281.67174	0.6264	0.00040205	-0.79221	-0.00050848	-0.16581	-0.00010643	641.8428297759905	59.323	0.76291	59.309	58.917	59.68	-0.014267					50	26	3	0	0	0	0.056067	1	14478	14478		51.488	29.951	1	626200			56836	5268	32527	32528	69652	69652					0.04216757597555443
VYSEDEQRN	9	Unmodified	_VYSEDEQRN_					0	0	0		ENSG00000183196|ENST00000332272|CHST6	ENSG00000183196|ENST00000332272|CHST6	ENSG00000183196|ENST00000332272|CHST6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.2514038085938	2	570.251817	1138.48908	0.36163	0.00020622	-0.96422	-0.00054985	-0.60259	-0.00034363	570.2516389452385	36.347	1.1163	36.347	36.142	37.259	0					82	39	3	0	0	0	0.31038	1	7357	7357		7.2892	1.5574	1	890310			56837	7350	32528	32529	69653	69653					-0.07462421535024077
VYSEVAAYEF	10	Unmodified	_VYSEVAAYEF_					0	0	0		ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.2747802734375	2	589.274229	1176.53391	0.1408	8.2969E-05	0.21166	0.00012473	0.35246	0.0002077	589.2746668098665	65.152	2.4953	65.152	64.755	67.25	0					269	89	6	0	0	0	4.2779E-14	9	16218	16172;16218;16262;16310;16354;16397;16444;16491;16542		198.25	145.98	1	26493000			56838	7551	32529	32530	69654;69655;69656;69657;69658;69659;69660;69661;69662	69655					-0.04729990721716604
VYSEVAAYEF	10	Unmodified	_VYSEVAAYEF_					0	0	0		ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.7651977539062	2	589.274229	1176.53391	0.42908	0.00025285	1.5148	0.00089265	1.9439	0.0011455	589.2747704396643	76.841	0.50149	76.841	76.559	77.06	0					28	18	2	0	0	0	0.2811	1	19763	19763		22.736	1.1993	1	159180			56839	7551	32529	32530	69663	69663					-0.04729990721716604
VYSEVAAYEF	10	Unmodified	_VYSEVAAYEF_					0	0	0		ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.2750854492188	2	589.274229	1176.53391	0.10887	6.4152E-05	0.24956	0.00014706	0.35843	0.00021121	589.2747052647284	65.048	2.4192	65.137	64.742	67.161	0.088882					276	88	6	0	0	0	4.2779E-14	8	16192	16144;16192;16234;16278;16330;16430;16506;16557		198.25	139.57	1	29561000			56840	7551	32529	32530	69664;69665;69666;69667;69668;69669;69670;69671	69665					-0.04729990721716604
VYSEVAAYEF	10	Unmodified	_VYSEVAAYEF_					0	0	0		ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.274658203125	2	589.274229	1176.53391	0.086164	5.0774E-05	0.26594	0.00015671	0.3521	0.00020748	589.2747287138882	65.156	2.5812	65.145	64.66	67.241	-0.011337					300	93	6	0	0	0	1.7383E-20	8	16210	16166;16210;16258;16301;16351;16404;16456;16548		214.41	146.33	1	30624000			56841	7551	32529	32530	69672;69673;69674;69675;69676;69677;69678;69679	69673					-0.04729990721716604
VYSEVAAYEF	10	Unmodified	_VYSEVAAYEF_					0	0	0		ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENST00000433341.5_1_22:31795606-31819296:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.7647705078125	2	589.274229	1176.53391	0.66955	0.00039455	-0.11227	-6.616E-05	0.55727	0.00032839	589.273827174829	77.068	0.69434	77.037	76.709	77.404	-0.031334					40	25	2	0	0	0	0.29092	1	19832	19832		21.537	1.0834	1	141110			56842	7551	32529	32530	69680	69680					-0.04729990721716604
VYSEVHFTL	9	Unmodified	_VYSEVHFTL_					0	0	0		nc|ENSG00000171992|Q8N3V7-3|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO;ENSG00000171992|ENST00000307662|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7975463867188	2	547.779482	1093.54441	0.43826	0.00024007	-0.31336	-0.00017165	0.12491	6.8421E-05	547.779694785154	57.976	0.85937	57.976	57.88	58.739	0					52	29	2	0	0	0	0.044952	1	14204	14204		54.774	4.8406	1	2858000			56843	12837	32530	32531	69681	69681					0.0013803672338781325
VYSEVHFTL	9	Unmodified	_VYSEVHFTL_					0	0	0		nc|ENSG00000171992|Q8N3V7-3|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO;ENSG00000171992|ENST00000307662|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7691650390625	2	547.779482	1093.54441	0.38018	0.00020825	2.4037	0.0013167	2.7839	0.001525	547.7800017204792	59.085	0.88652	59.085	58.439	59.326	0					45	19	3	0	0	0	0.012082	1	14168	14168		85.272	35.339	1	293590			56844	12837	32530	32531	69682	69682					0.0013803672338781325
VYSEVHFTL	9	Unmodified	_VYSEVHFTL_					0	0	0		nc|ENSG00000171992|Q8N3V7-3|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO;ENSG00000171992|ENST00000307662|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7704467773438	2	547.779482	1093.54441	0.39788	0.00021795	0.74591	0.0004086	1.1438	0.00062655	547.779723498018	57.84	0.085106	57.84	57.768	57.854	0					4	2	2	0	0	0	5.6973E-07	1	13967	13967		158.2	104.37	1	1707300			56845	12837	32530	32531	69683	69683					0.0013803672338781325
VYSFRPSSL	9	Unmodified	_VYSFRPSSL_					0	0	0			REV__ENSG00000100629|ENST00000555265|CEP128	REV__ENSG00000100629|ENST00000555265|CEP128	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.80078125	2	528.279649	1054.54475	0.45198	0.00023877	1.181	0.00062389	1.633	0.00086266	528.2802216648412	51.856	0.84233	51.906	51.599	52.441	0.050571					47	30	2	0	0	0	0.19839	1	12149	12149		28.487	6.7402	1	846060	+		56846	14218	32531	32532	69684	69684					0.0196545644323578
VYSFRPSSL	9	Unmodified	_VYSFRPSSL_					0	0	0			REV__ENSG00000100629|ENST00000555265|CEP128	REV__ENSG00000100629|ENST00000555265|CEP128	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	528.279649	1054.54475	0.46193	0.00024403	1.2624	0.00066691	1.7243	0.00091094	528.2802891295479	51.93	0.53542	51.93	51.676	52.211	0	-0.00017523	-1.7595E-05	NaN	21.747	37	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	751760	+		56847	14218	32531	32532							0.0196545644323578
VYSFRPSSL	9	Unmodified	_VYSFRPSSL_					0	0	0			REV__ENSG00000100629|ENST00000555265|CEP128	REV__ENSG00000100629|ENST00000555265|CEP128	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.279649	1054.54475	0.28741	0.00015183	1.3231	0.00069899	1.6105	0.00085082	528.2802439114542	51.956	0.62256	51.955	51.736	52.358	-0.00081253	0.024588	4.6562E-05	NaN	21.747	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	841840	+		56848	14218	32531	32532							0.0196545644323578
VYSFSSHISP	10	Unmodified	_VYSFSSHISP_					0	0	0		nc|ENSG00000138650|Q9P2E7-2|PCDH10;ENSG00000138650|ENST00000264360|PCDH10	nc|ENSG00000138650|Q9P2E7-2|PCDH10	nc|ENSG00000138650|Q9P2E7-2|PCDH10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.2562255859375	2	562.274564	1122.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.516	1	49.548	49.048	50.048	0.032043								0	0	0	0.34994	1	11404	11404		14.838	0.93222	1				56849	4174	32532	32533	69685	69685					-0.021791512819845593
VYSFVTPTF	9	Unmodified	_VYSFVTPTF_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7713012695312	2	530.771126	1059.5277	0.50515	0.00026812	0.017359	9.2139E-06	0.52251	0.00027733	530.7710575693205	76.629	1.4361	76.629	76.283	77.719	0					118	52	4	0	0	0	2.2223E-07	2	19728	19728;19778		171.47	114	1	4862600			56850	3524	32533	32534	69686;69687	69686					0.00031535837410956447
VYSFVTPTF	9	Unmodified	_VYSFVTPTF_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7714233398438	2	530.771126	1059.5277	0.22105	0.00011733	0.26704	0.00014174	0.4881	0.00025907	530.7712212908674	76.554	1.47	76.607	76.32	77.79	0.053413					125	52	4	0	0	0	9.3868E-05	2	19706	19706;19755		141.83	84.355	1	4438100			56851	3524	32533	32534	69688;69689	69688					0.00031535837410956447
VYSFVTPTF	9	Unmodified	_VYSFVTPTF_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7713623046875	2	530.771126	1059.5277	0.66345	0.00035214	-0.19717	-0.00010465	0.46628	0.00024749	530.7709856569018	76.682	1.1934	76.65	76.263	77.456	-0.031479					123	43	5	0	0	0	9.3868E-05	2	19711	19711;19761		141.83	74.483	1	5008600			56852	3524	32533	32534	69690;69691	69690					0.00031535837410956447
VYSGGVYLF	9	Unmodified	_VYSGGVYLF_					0	0	0		ENST00000587406.5_1_19:19232302-19249261:-|nuORF;ENST00000589448.5_1_19:19230741-19243387:-|nuORF;ENSG00000064545|ENST00000162044|TMEM161A	ENST00000587406.5_1_19:19232302-19249261:-|nuORF	ENST00000587406.5_1_19:19232302-19249261:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.7582702636719	2	502.758018	1003.50148	0.1447	7.2751E-05	0.074976	3.7695E-05	0.21968	0.00011045	502.7579647557193	73.51	0.7467	73.51	73.081	73.828	0					80	26	4	0	0	0	0.11517	1	18764	18764		36.044	5.8194	1	1173800			56853	788	32534	32535	69692	69692					-0.00012733334040149202
VYSGGVYLF	9	Unmodified	_VYSGGVYLF_					0	0	0		ENST00000587406.5_1_19:19232302-19249261:-|nuORF;ENST00000589448.5_1_19:19230741-19243387:-|nuORF;ENSG00000064545|ENST00000162044|TMEM161A	ENST00000587406.5_1_19:19232302-19249261:-|nuORF	ENST00000587406.5_1_19:19232302-19249261:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.75799560546875	2	502.758018	1003.50148	0.21068	0.00010592	-0.025805	-1.2974E-05	0.18487	9.2947E-05	502.757906475167	73.508	0.66148	73.562	73.2	73.861	0.053833					68	23	4	0	0	0	0.11517	1	18741	18741		36.044	5.8194	1	929640			56854	788	32534	32535	69693	69693					-0.00012733334040149202
VYSGGVYLF	9	Unmodified	_VYSGGVYLF_					0	0	0		ENST00000587406.5_1_19:19232302-19249261:-|nuORF;ENST00000589448.5_1_19:19230741-19243387:-|nuORF;ENSG00000064545|ENST00000162044|TMEM161A	ENST00000587406.5_1_19:19232302-19249261:-|nuORF	ENST00000587406.5_1_19:19232302-19249261:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.75811767578125	2	502.758018	1003.50148	0.29544	0.00014854	-0.027407	-1.3779E-05	0.26803	0.00013476	502.75790669989885	73.588	0.75667	73.558	73.124	73.881	-0.030663					79	27	4	0	0	0	0.010638	2	18808	18764;18808		78.445	48.22	1	982030			56855	788	32534	32535	69694;69695	69695					-0.00012733334040149202
VYSGPHPQREM	11	Unmodified	_VYSGPHPQREM_					0	0	0		nc|ENSG00000122591|Q9BYI3-3|HYCC1;ENSG00000122591|ENST00000432176|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.2071533203125	3	434.208278	1299.60301	-0.14436	-6.2684E-05	-1.0696	-0.00046441	-1.2139	-0.00052709	434.2075969197382	55.325	0.59663	55.325	55.061	55.658	0					37	21	2	0	0	0	0.32824	1	13229	13229		12.856	1.2246	1	424950			56856	3054	32535	32536	69696	69696					-0.034812299737950525
VYSGPHPQREM	11	Unmodified	_VYSGPHPQREM_					0	0	0		nc|ENSG00000122591|Q9BYI3-3|HYCC1;ENSG00000122591|ENST00000432176|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	434.208278	1299.60301	0.014978	6.5036E-06	-1.2374	-0.00053728	-1.2224	-0.00053078	434.20753285452986	55.627	0.47466	55.608	55.379	55.853	-0.019081	0.20794	-0.00013707	NaN	12.856	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	688470			56857	3054	32535	32536							-0.034812299737950525
VYSHLKSVL	9	Unmodified	_VYSHLKSVL_					0	0	0		nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF;nc|ENSG00000127054|Q5TA45-2|INTS11;nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11	nc|ENSG00000127054|Q5TA45-5|INTS11	nc|ENSG00000127054|Q5TA45-5|INTS11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7592163085938	2	523.305667	1044.59678	-0.22012	-0.00011519	-1.5178	-0.00079428	-1.7379	-0.00090947	523.3051313335823	34.676	0.83725	34.753	34.279	35.116	0.077377					49	29	2	0	0	0	0.24787	1	6753	6753		15.248	3.6082	1	183840			56858	12690	32536	32537	69697	69697					0.0762661985700106
VYSHLPDLL	9	Unmodified	_VYSHLPDLL_					0	0	0		ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.2373657226562	2	528.78985	1055.56515	0.41301	0.00021839	-0.30858	-0.00016317	0.10443	5.522E-05	528.7899953076934	61.136	0.27979	61.127	61.016	61.296	-0.0094566					10	9	2	0	0	0	0.1854	1	15002	15002		32.305	12.866	1	368410			56859	4688	32537	32538	69698	69698					0.03958627103043
VYSHVIQKL	9	Unmodified	_VYSHVIQKL_					0	0	0		ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.8192749023438	2	543.818941	1085.62333	0.53485	0.00029086	-0.01344	-7.3091E-06	0.52141	0.00028355	543.8189548637391	32.787	0.79304	32.787	32.44	33.233	0					71	27	3	0	0	0	3.6475E-11	2	6300	6256;6300		191.38	109.49	1	2810000			56860	3843	32538	32539	69699;69700	69700					0.08394308748324875
VYSHVIQKL	9	Unmodified	_VYSHVIQKL_					0	0	0		ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8192749023438	2	543.818941	1085.62333	0.68442	0.0003722	-0.1362	-7.4066E-05	0.54823	0.00029814	543.8188773924456	32.651	0.75018	32.706	32.421	33.171	0.055309					69	26	3	0	0	0	3.6475E-11	2	6225	6225;6275		191.38	109.49	1	2873800			56861	3843	32538	32539	69701;69702	69701					0.08394308748324875
VYSHVIQKL	9	Unmodified	_VYSHVIQKL_					0	0	0		ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.8192749023438	2	543.818941	1085.62333	0.602	0.00032738	-0.031545	-1.7155E-05	0.57046	0.00031022	543.8189059622617	32.675	0.76183	32.729	32.441	33.203	0.054371					72	27	3	0	0	0	3.6475E-11	2	6273	6224;6273		191.38	109.49	1	2856000			56862	3843	32538	32539	69703;69704	69704					0.08394308748324875
VYSHVIQKLQL	11	Unmodified	_VYSHVIQKLQL_					0	0	0		ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	443.7532958984375	3	443.2626	1326.76597	0.11463	5.081E-05	-0.055954	-2.4802E-05	0.058674	2.6008E-05	443.2625194713628	47.176	0.66063	47.229	47.014	47.674	0.052574					59	24	3	0	0	0	0.33207	1	10792	10792		5.5233	1.1171	1	1097600			56863	3843	32539	32540	69705	69705					0.11565896419710953
VYSIISVQL	9	Unmodified	_VYSIISVQL_					0	0	0		ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;ENSG00000135926|ENST00000258412|TMBIM1	ENST00000476429.5_1_2:219143236-219144163:-|nuORF	ENST00000476429.5_1_2:219143236-219144163:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2998962402344	2	511.30005	1020.58555	0.44406	0.00022705	-0.48274	-0.00024682	-0.038673	-1.9774E-05	511.29969122184093	78.903	1.0869	78.961	78.605	79.692	0.058151					140	46	5	0	0	0	0.00012108	2	20421	20421;20461		137.42	51.782	1	2493700			56864	3922	32540	32541	69706;69707	69706					0.07607797762852897
VYSIISVQL	9	Unmodified	_VYSIISVQL_					0	0	0		ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;ENSG00000135926|ENST00000258412|TMBIM1	ENST00000476429.5_1_2:219143236-219144163:-|nuORF	ENST00000476429.5_1_2:219143236-219144163:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	511.30005	1020.58555	0.54702	0.00027969	-0.58001	-0.00029656	-0.032986	-1.6866E-05	511.29964474291194	78.949	1.1252	78.949	78.645	79.77	0	-0.0017366	-5.5803E-05	NaN	137.42	134	45	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2896700			56865	3922	32540	32541							0.07607797762852897
VYSIISVQL	9	Unmodified	_VYSIISVQL_					0	0	0		ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;ENSG00000135926|ENST00000258412|TMBIM1	ENST00000476429.5_1_2:219143236-219144163:-|nuORF	ENST00000476429.5_1_2:219143236-219144163:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	511.30005	1020.58555	0.53344	0.00027275	-0.49943	-0.00025536	0.034007	1.7388E-05	511.29967583596545	78.972	0.88908	78.941	78.63	79.519	-0.030434	-0.0090548	2.6594E-05	NaN	137.42	109	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1626500			56866	3922	32540	32541							0.07607797762852897
VYSIQNNSF	9	Unmodified	_VYSIQNNSF_					0	0	0			REV__ENSG00000175018|ENST00000368821|TEX36	REV__ENSG00000175018|ENST00000368821|TEX36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.77294921875	2	536.258914	1070.50327	0.4646	0.00024914	-1.8364	-0.00098479	-1.3718	-0.00073565	536.2580935644689	80.189	0.51212	80.189	79.953	80.466	0					31	18	2	0	0	0	0.23783	1	20810	20810		18.135	9.5417	1	225280	+		56867	17868	32541	32542	69708	69708					-0.02915724316108026
VYSIQNNSF	9	Unmodified	_VYSIQNNSF_					0	0	0			REV__ENSG00000175018|ENST00000368821|TEX36	REV__ENSG00000175018|ENST00000368821|TEX36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7728271484375	2	536.258914	1070.50327	0.47938	0.00025707	-2.0054	-0.0010754	-1.526	-0.00081833	536.2579268575131	80.275	0.49841	80.248	79.977	80.475	-0.026825					28	16	2	0	0	0	0.24688	1	20778	20778		14.838	2.3067	1	179260	+		56868	17868	32541	32542	69709	69709					-0.02915724316108026
VYSKDQLQTF	10	Unmodified	_VYSKDQLQTF_					0	0	0		ENSG00000138107|ENST00000369905|ACTR1A;ENSG00000115073|ENST00000289228|ACTR1B;ENST00000418944.1_1_2:110941632-110941998:+|nuORF;ENST00000460427.2_1_2:98275340-98276060:-|nuORF;ENST00000480947.1_1_10:104243895-104247966:-|nuORF;ENST00000451664.1_1_2:98275340-98280353:-|nuORF	ENSG00000138107|ENST00000369905|ACTR1A	ENSG00000138107|ENST00000369905|ACTR1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.8142700195312	2	614.814053	1227.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.908	1	41.908	41.408	42.408	0								0	0	0	2.2864E-05	1	9075	9075		96.034	56.085	1				56869	2604	32542	32543	69710	69710					0.008850759522829321
VYSLQEQHF	9	Unmodified	_VYSLQEQHF_					0	0	0		ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	ENSG00000162695|ENST00000357650|SLC30A7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7798461914062	2	575.780013	1149.54547	0.57749	0.00033251	0.48063	0.00027673	1.0581	0.00060924	575.7797156252988	45.264	0.65112	45.333	45.034	45.685	0.068569					54	22	4	0	0	0	5.4053E-05	1	10112	10112		148.27	92.091	1	771220			56870	5602	32543	32544	69711	69711					-0.023317489077271603
VYSLQQFGF	9	Unmodified	_VYSLQQFGF_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.77490234375	2	544.7742	1087.53385	0.45394	0.0002473	1.3853	0.00075465	1.8392	0.0010019	544.7746694665115	79.907	0.9286	79.907	79.612	80.54	0					79	34	4	0	0	0	0.00014042	1	20764	20764		134.3	82.027	1	3224800			56871	654	32544	32545	69712	69712					-0.00641945931056398
VYSLQQFGF	9	Unmodified	_VYSLQQFGF_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7752685546875	2	544.7742	1087.53385	0.59523	0.00032427	1.6468	0.00089713	2.242	0.0012214	544.7747457903047	79.869	0.97698	79.93	79.594	80.571	0.061417					78	36	4	0	0	0	0.0010463	1	20746	20746		122.18	72.246	1	3782100			56872	654	32544	32545	69713	69713					-0.00641945931056398
VYSLQQFGF	9	Unmodified	_VYSLQQFGF_					0	0	0		nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENSG00000049656|ENST00000320895|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	nc|ENSG00000049656|Q96KA5-2|CLPTM1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7750854492188	2	544.7742	1087.53385	0.61477	0.00033491	1.6631	0.00090604	2.2779	0.0012409	544.7747363127565	79.993	1.1416	79.964	79.644	80.786	-0.028923					87	40	4	0	0	0	6.1526E-05	1	20763	20763		147.06	94.791	1	4132300			56873	654	32544	32545	69714	69714					-0.00641945931056398
VYSLQVRSL	9	Unmodified	_VYSLQVRSL_					0	0	0		ENST00000603821.1_1_4:153247094-153249553:-|nuORF	ENST00000603821.1_1_4:153247094-153249553:-|nuORF	ENST00000603821.1_1_4:153247094-153249553:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7984619140625	2	532.808574	1063.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.48	1	56.46	55.96	56.96	-0.019081								0	0	0	0.21009	1	13556	13556		19.257	3.4098	1				56874	12276	32545	32546	69715	69715					0.07333718368658992
VYSLQVRSL	9	Unmodified	_VYSLQVRSL_					0	0	0		ENST00000603821.1_1_4:153247094-153249553:-|nuORF	ENST00000603821.1_1_4:153247094-153249553:-|nuORF	ENST00000603821.1_1_4:153247094-153249553:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7984008789062	2	532.808574	1063.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.634	1	56.615	56.115	57.115	-0.019081								0	0	0	0.19932	1	13605	13605		22.736	4.5899	1				56875	12276	32545	32546	69716	69716					0.07333718368658992
VYSMFLHV	8	Unmodified	_VYSMFLHV_					0	0	0			REV__ENSG00000278870|ENST00000623849|OR51G1	REV__ENSG00000278870|ENST00000623849|OR51G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7662658691406	2	498.254588	994.494624	0.49362	0.00024595	-1.582	-0.00078823	-1.0884	-0.00054228	498.25332850019436	63.57	0.63296	63.57	63.256	63.889	0					35	22	3	0	0	0	0.2705	1	15800	15800		34.187	6.0141	1	142280	+		56876	19351	32546	32547	69717	69717					-0.002843694862690427
VYSMIEEEF	9	Unmodified	_VYSMIEEEF_					0	0	0			REV__ENSG00000002746|ENST00000395891|HECW1	REV__ENSG00000002746|ENST00000395891|HECW1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2538452148438	2	573.754815	1145.49508	0.5865	0.00033651	-3.1283	-0.0017949	-2.5418	-0.0014583	574.253352375956	55.217	0.83258	55.288	54.971	55.804	0.070885					68	30	4	0	0	0	0.20344	1	13140	13140		23.148	6.2061	1	722410	+		56877	13320	32547	32548	69718	69718					-0.07185039347723432
VYSMIEEEF	9	Unmodified	_VYSMIEEEF_					0	0	0			REV__ENSG00000002746|ENST00000395891|HECW1	REV__ENSG00000002746|ENST00000395891|HECW1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	573.754815	1145.49508	0.5865	0.00033651	-3.1283	-0.0017949	-2.5418	-0.0014583	574.253352375956	55.217	0.83258	55.288	54.971	55.804	0.070885	-0.049006	-0.00012216	NaN	23.148	68	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	722410	+		56878	13320	32547	32548							-0.07185039347723432
VYSNADIYLF	10	Unmodified	_VYSNADIYLF_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.302734375	2	602.797872	1203.58119	0.57608	0.00034726	2.8832	0.001738	3.4593	0.0020852	602.7971400113458	63.554	1.7611	63.554	62.369	64.13	0					133	64	3	0	0	0	0.2811	1	15749	15749		22.736	4.6013	1	810740			56879	1819	32548	32549	69719	69719					-0.012457114507469669
VYSNADIYLF	10	Unmodified	_VYSNADIYLF_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.7982788085938	2	602.797872	1203.58119	0.82639	0.00049814	0.14393	8.6758E-05	0.97031	0.0005849	602.7975191514743	77.628	1.0461	77.628	77.256	78.302	0					58	38	3	0	0	0	0.23397	1	20060	20060		28.495	14.88	1	220870			56880	1819	32548	32549	69720	69720					-0.012457114507469669
VYSNADIYLF	10	Unmodified	_VYSNADIYLF_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3028564453125	2	602.797872	1203.58119	0.61801	0.00037253	2.3249	0.0014014	2.9429	0.001774	602.7970912046233	63.339	1.466	63.434	62.495	63.961	0.095722					111	52	3	0	0	0	0.30958	1	15785	15785		19.257	1.122	1	886140			56881	1819	32548	32549	69721	69721					-0.012457114507469669
VYSNADIYLF	10	Unmodified	_VYSNADIYLF_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.30029296875	2	602.797872	1203.58119	0.4832	0.00029127	2.3764	0.0014325	2.8596	0.0017237	602.7972689602049	63.615	1.6096	63.607	62.465	64.075	-0.0085526					126	56	3	0	0	0	0.22916	2	15751	15707;15751		29.082	6.3453	1	933480			56882	1819	32548	32549	69722;69723	69723					-0.012457114507469669
VYSNADIYLF	10	Unmodified	_VYSNADIYLF_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	602.797872	1203.58119	0.85779	0.00051707	0.17711	0.00010676	1.0349	0.00062383	603.2997114851418	77.511	0.82658	77.566	77.15	77.977	0.055412	-0.05303	-5.1762E-05	NaN	28.495	47	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206440			56883	1819	32548	32549							-0.012457114507469669
VYSNADIYLF	10	Unmodified	_VYSNADIYLF_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	602.797872	1203.58119	0.80765	0.00048685	0.35276	0.00021264	1.1604	0.0006995	602.7979737812818	77.695	1.014	77.663	77.019	78.033	-0.031334	0.044223	0.00016	NaN	28.495	43	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177490			56884	1819	32548	32549							-0.012457114507469669
VYSNSIYEL	9	Unmodified	_VYSNSIYEL_					0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2694091796875	2	544.268947	1086.52334	0.49727	0.00027065	0.49684	0.00027041	0.9941	0.00054106	544.2691891094619	61.07	1.1556	61.07	60.764	61.92	0					86	42	3	0	0	0	0.00010125	2	14992	14943;14992		140.63	62.484	1	5487200			56885	7464	32549	32550	69724;69725	69725					-0.01645973376139409
VYSNSIYEL	9	Unmodified	_VYSNSIYEL_					0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2693481445312	2	544.268947	1086.52334	0.58248	0.00031703	0.35969	0.00019577	0.94218	0.0005128	544.2690644680257	60.934	1.011	61.031	60.779	61.79	0.096989					85	36	3	0	0	0	0.00051734	2	14956	14903;14956		128.93	50.783	1	5877800			56886	7464	32549	32550	69726;69727	69727					-0.01645973376139409
VYSNSIYEL	9	Unmodified	_VYSNSIYEL_					0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2694091796875	2	544.268947	1086.52334	0.62057	0.00033776	0.26647	0.00014503	0.88704	0.00048279	544.2690803003437	61.059	1.1946	61.05	60.759	61.954	-0.0094528					92	43	3	0	0	0	0.00010125	3	14980	14934;14980;15026		140.63	58.743	1	5112500			56887	7464	32549	32550	69728;69729;69730	69729					-0.01645973376139409
VYSNSIYELL	10	Unmodified	_VYSNSIYELL_					0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.8118286132812	2	600.810979	1199.6074	0.66952	0.00040225	0.60363	0.00036267	1.2731	0.00076492	600.8113472432732	79.131	0.48696	79.131	78.879	79.366	0					44	20	3	0	0	0	0.048379	2	20479	20479;20525		59.368	33.1	1	232710			56888	7464	32550	32551	69731;69732	69731					0.015585577207730239
VYSNSIYELL	10	Unmodified	_VYSNSIYELL_					0	0	0		ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENSG00000184584|ENST00000330794|STING1	ENSG00000184584|ENST00000330794|STING1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8111572265625	2	600.810979	1199.6074	0.62028	0.00037267	0.67158	0.0004035	1.2919	0.00077617	600.8114311993676	79.208	0.39417	79.179	78.954	79.348	-0.028931					33	16	3	0	0	0	0.045157	2	20515	20461;20515		60.074	27.957	1	236240			56889	7464	32550	32551	69733;69734	69734					0.015585577207730239
VYSPALTDFTF	11	Unmodified	_VYSPALTDFTF_					0	0	0		ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB;ENST00000475214.5_1_3:135974226-136045892:+|nuORF	ENSG00000114054|ENST00000251654|PCCB	ENSG00000114054|ENST00000251654|PCCB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.8602294921875	2	630.810979	1259.6074	0.60004	0.00037851	-1.1543	-0.00072814	-0.55426	-0.00034963	630.8100268698154	84.321	0.32149	84.321	84.205	84.527	0					21	11	2	0	0	0	0.30294	1	22080	22080		24.991	14.191	1	145470			56890	2543	32551	32552	69735	69735					-0.012014422792390178
VYSPALTDFTF	11	Unmodified	_VYSPALTDFTF_					0	0	0		ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB;ENST00000475214.5_1_3:135974226-136045892:+|nuORF	ENSG00000114054|ENST00000251654|PCCB	ENSG00000114054|ENST00000251654|PCCB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.8606567382812	2	630.810979	1259.6074	0.4638	0.00029257	-0.89896	-0.00056707	-0.43515	-0.0002745	630.8102001777478	84.274	0.56464	84.351	84.049	84.614	0.077095					33	22	2	0	0	0	0.30294	1	22056	22056		24.991	18.268	1	184090			56891	2543	32551	32552	69736	69736					-0.012014422792390178
VYSPALTDFTF	11	Unmodified	_VYSPALTDFTF_					0	0	0		ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB;ENST00000475214.5_1_3:135974226-136045892:+|nuORF	ENSG00000114054|ENST00000251654|PCCB	ENSG00000114054|ENST00000251654|PCCB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.792236328125	2	630.810979	1259.6074	0.56933	0.00035914	-0.79807	-0.00050343	-0.22874	-0.00014429	630.8101524832832	84.387	0.44386	84.371	84.134	84.578	-0.016823					28	18	2	0	0	0	0.42346	1	22153	22153		8.1555	1.4324	1	164730			56892	2543	32551	32552	69737	69737					-0.012014422792390178
VYSPHVLNL	9	Unmodified	_VYSPHVLNL_					0	0	0		nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.2901000976562	2	521.290017	1040.56548	0.61241	0.00031924	-0.54952	-0.00028646	0.062888	3.2783E-05	521.2898626912952	53.528	1.7993	53.528	53.038	54.837	0					186	60	5	0	0	0	4.1361E-11	5	12649	12649;12698;12747;12793;12869		189.78	111.63	1	30863000			56893	1141;8018	32552	32553	69738;69739;69740;69741;69742	69738					0.0468204682290434
VYSPHVLNL	9	Unmodified	_VYSPHVLNL_					0	0	0		nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2902221679688	2	521.290017	1040.56548	0.34018	0.00017733	-0.23801	-0.00012407	0.10217	5.3263E-05	521.2900077203924	53.471	2.2418	53.528	53.013	55.255	0.056255					206	79	5	0	0	0	1.3869E-07	5	12634	12634;12682;12730;12776;12841		174.73	103.59	1	32513000			56894	1141;8018	32552	32553	69743;69744;69745;69746;69747	69743					0.0468204682290434
VYSPHVLNL	9	Unmodified	_VYSPHVLNL_					0	0	0		nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.290283203125	2	521.290017	1040.56548	0.49615	0.00025864	-0.42247	-0.00022023	0.073674	3.8406E-05	521.2899426179906	53.658	1.8145	53.648	53.142	54.957	-0.0096054					183	65	5	0	0	0	1.8227E-16	5	12682	12682;12722;12774;12824;12871		205.78	116.87	1	29682000			56895	1141;8018	32552	32553	69748;69749;69750;69751;69752	69748					0.0468204682290434
VYSPHVLNLTL	11	Unmodified	_VYSPHVLNLTL_					0	0	0		nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.3565063476562	2	628.355888	1254.69722	0.33743	0.00021202	0.16609	0.00010436	0.50352	0.00031639	628.3560577073339	67.008	0.76651	67.008	66.744	67.51	0					77	26	4	0	0	0	2.4288E-09	2	16788	16788;16841		153.7	102.07	1	1423100			56896	1141;8018	32553	32554	69753;69754	69753					0.08006232119987544
VYSPHVLNLTL	11	Unmodified	_VYSPHVLNLTL_					0	0	0		nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	628.3563232421875	2	628.355888	1254.69722	0.086554	5.4387E-05	0.43517	0.00027344	0.52172	0.00032783	628.3561375519653	66.875	0.70351	66.959	66.71	67.414	0.083832					76	24	4	0	0	0	6.790600000000001E-19	2	16752	16752;16797		200.78	151.23	1	1393100			56897	1141;8018	32553	32554	69755;69756	69755					0.08006232119987544
VYSPHVLNLTL	11	Unmodified	_VYSPHVLNLTL_					0	0	0		nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000197959|Q9UQ16-2|DNM3	nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.3560791015625	2	628.355888	1254.69722	0.064492	4.0524E-05	0.56611	0.00035572	0.6306	0.00039624	628.3562476855224	67.016	0.68851	67.002	66.764	67.453	-0.013985					59	23	3	0	0	0	3.948E-18	2	16797	16797;16849		188.38	130.66	1	1154800			56898	1141;8018	32553	32554	69757;69758	69757					0.08006232119987544
VYSPKSPSL	9	Unmodified	_VYSPKSPSL_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2694091796875	2	489.26875	976.522947	0.41548	0.00020328	0.6451	0.00031563	1.0606	0.00051891	489.26897722510984	36.204	1.0368	36.204	35.719	36.756	0					84	37	3	0	0	0	0.018737	1	7298	7298		86.332	34.702	1	1260600			56899	1788	32554	32555	69759	69759					0.03374651694673503
VYSPKSPSL	9	Unmodified	_VYSPKSPSL_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.26904296875	2	489.26875	976.522947	0.44664	0.00021853	0.67901	0.00033222	1.1256	0.00055074	489.2689829237148	36.02	0.9407	36.102	35.71	36.651	0.082355					86	33	4	0	0	0	0.0054984	2	7304	7252;7304		86.332	26.258	1	1522800			56900	1788	32554	32555	69760;69761	69761					0.03374651694673503
VYSPKSPSL	9	Unmodified	_VYSPKSPSL_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2687683105469	2	489.26875	976.522947	0.52644	0.00025757	-0.45873	-0.00022444	0.067714	3.313E-05	489.2688728115856	35.997	1.0357	36.083	35.645	36.68	0.086246					84	36	3	0	0	0	0.0090577	1	7274	7274		89.401	34.627	1	1467300			56901	1788	32554	32555	69762	69762					0.03374651694673503
VYSPLGSAYKL	11	Unmodified	_VYSPLGSAYKL_					0	0	0		nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;ENST00000514806.5_1_5:54965038-54993786:-|nuORF;nc|ENSG00000177058|Q8NBW4-2|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.3297729492188	2	599.329339	1196.64412	0.59504	0.00035662	-0.11195	-6.7095E-05	0.48309	0.00028953	599.3291887732601	57.358	0.41238	57.358	57.165	57.578	0					40	14	3	0	0	0	0.004696	3	13849	13821;13833;13849		80.896	52.401	1	1227900			56902	6959	32555	32556	69763;69764;69765	69765					0.05366854337330551
VYSPLGSAYKL	11	Unmodified	_VYSPLGSAYKL_					0	0	0		nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;ENST00000514806.5_1_5:54965038-54993786:-|nuORF;nc|ENSG00000177058|Q8NBW4-2|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.81884765625	2	599.329339	1196.64412	0.51322	0.00030759	-0.0084026	-5.0359E-06	0.50481	0.00030255	599.3292335537233	57.228	0.38668	57.306	57.097	57.484	0.078671					39	13	4	0	0	0	0.006514	1	13780	13780		77.049	49.825	1	1228800			56903	6959	32555	32556	69766	69766					0.05366854337330551
VYSPLGSAYKL	11	Unmodified	_VYSPLGSAYKL_					0	0	0		nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;ENST00000514806.5_1_5:54965038-54993786:-|nuORF;nc|ENSG00000177058|Q8NBW4-2|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.3295288085938	2	599.329339	1196.64412	0.2401	0.0001439	0.15764	9.4476E-05	0.39774	0.00023838	599.3293385516599	57.51	0.56791	57.493	57.091	57.659	-0.017197					48	20	3	0	0	0	0.050872	1	13870	13870		85.764	50.832	1	1259800			56904	6959	32555	32556	69767	69767					0.05366854337330551
VYSQFITQL	9	Unmodified	_VYSQFITQL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;ENST00000496204.1_1_5:131931266-131935763:+|nuORF	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7955322265625	2	549.795132	1097.57571	0.47638	0.00026191	-0.099633	-5.4778E-05	0.37675	0.00020713	550.29619495485	70.657	2.3366	70.717	70.351	72.688	0.060783					232	84	5	0	0	0	0.00054549	1	17868	17868		128.57	42.931	1	29892000			56905	2508	32556	32557	69768	69768					0.030826097574845335
VYSQILRKL	9	Unmodified	_VYSQILRKL_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;NUP85|p.W197Ifs*11|1|0.05|ENSG00000125450|chr17:75218297-75218298|-/ATCTGCAGCAAGTTCCTTTA|frameshift_variant;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8035888671875	2	560.347866	1118.68118	0.25337	0.00014198	-0.42012	-0.00023541	-0.16675	-9.3439E-05	560.3477268459284	43.654	0.38372	43.654	43.494	43.878	0					24	13	2	0	0	0	0.20381	1	9604	9604		29.841	12.728	1	331820			56906	3208	32557	32558	69769	69769					0.1265857067376146
VYSQILRKL	9	Unmodified	_VYSQILRKL_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;NUP85|p.W197Ifs*11|1|0.05|ENSG00000125450|chr17:75218297-75218298|-/ATCTGCAGCAAGTTCCTTTA|frameshift_variant;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8035888671875	2	560.347866	1118.68118	0.51644	0.00028939	-1.2852	-0.00072017	-0.76878	-0.00043078	560.3470458550198	43.318	0.44355	43.395	43.155	43.599	0.077515					24	15	2	0	0	0	0.21538	1	9541	9541		26.268	4.5215	1	349770			56907	3208	32557	32558	69770	69770					0.1265857067376146
VYSQILRKL	9	Unmodified	_VYSQILRKL_					0	0	0		nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;NUP85|p.W197Ifs*11|1|0.05|ENSG00000125450|chr17:75218297-75218298|-/ATCTGCAGCAAGTTCCTTTA|frameshift_variant;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF	nc|ENSG00000125450|Q9BW27-3|NUP85	nc|ENSG00000125450|Q9BW27-3|NUP85	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8035888671875	2	560.347866	1118.68118	0.29029	0.00016266	-1.1288	-0.00063252	-0.83851	-0.00046986	560.3472520652742	43.274	0.5176	43.358	43.166	43.684	0.083992					28	18	2	0	0	0	0.21538	1	9530	9530		26.268	8.1218	1	282610			56908	3208	32557	32558	69771	69771					0.1265857067376146
VYSQIPAAVKL	11	Unmodified	_VYSQIPAAVKL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8533325195312	2	594.852981	1187.69141	0.60935	0.00036247	0.51816	0.00030823	1.1275	0.0006707	594.8529443416188	55.655	0.69913	55.655	55.35	56.049	0					90	24	6	0	0	0	1.3273E-08	2	13314	13264;13314		139.32	103.19	1	3656300			56909	1896	32558	32559	69772;69773	69773					0.10507133608325603
VYSQIPAAVKL	11	Unmodified	_VYSQIPAAVKL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.853759765625	2	594.852981	1187.69141	0.72616	0.00043196	-0.20184	-0.00012007	0.52431	0.00031189	594.8528220289086	55.578	0.64228	55.649	55.347	55.989	0.070889					72	23	4	0	0	0	5.0857E-09	2	13249	13249;13295		150.18	112	1	3550200			56910	1896	32558	32559	69774;69775	69774					0.10507133608325603
VYSQIPAAVKL	11	Unmodified	_VYSQIPAAVKL_					0	0	0		nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	nc|ENSG00000104517|O95071-2|UBR5	nc|ENSG00000104517|O95071-2|UBR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8533325195312	2	594.852981	1187.69141	0.56333	0.0003351	0.24685	0.00014684	0.81017	0.00048193	594.8531361294256	55.72	0.97823	55.701	55.155	56.133	-0.019077					88	35	4	0	0	0	1.3273E-08	3	13277	13277;13325;13377		139.32	100.71	1	3629600			56911	1896	32558	32559	69776;69777;69778	69776					0.10507133608325603
VYSSDVFDIF	10	Unmodified	_VYSSDVFDIF_					0	0	0		ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.281982421875	2	596.282054	1190.54956	0.56569	0.00033731	1.0238	0.00061048	1.5895	0.00094779	596.2820917045634	88.982	0.53876	89.073	88.83	89.369	0.090569					52	24	3	0	0	0	0.2811	1	23522	23522		22.736	0	1	169020			56912	632	32559	32560	69779	69779					-0.03809704204672926
VYSSDVFDIF	10	Unmodified	_VYSSDVFDIF_					0	0	0		ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.282470703125	2	596.282054	1190.54956	0.49686	0.00029627	1.1732	0.00069958	1.6701	0.00099584	596.2822665476955	89.097	0.48032	89.096	88.907	89.387	-0.00080872					39	21	3	0	0	0	0.2811	1	23570	23570		22.736	0	1	246180			56913	632	32559	32560	69780	69780					-0.03809704204672926
VYSSDVFDIF	10	Unmodified	_VYSSDVFDIF_					0	0	0		ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	596.282054	1190.54956	0.58116	0.00034654	1.0987	0.00065512	1.6798	0.0010017	596.2820246722623	89.151	0.54765	89.151	88.821	89.369	0	0.044185	1.0853E-05	NaN	22.736	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147860			56914	632	32559	32560							-0.03809704204672926
VYSSDYFSF	9	Unmodified	_VYSSDYFSF_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7404174804688	2	557.740022	1113.46549	0.39845	0.00022223	-0.16856	-9.4012E-05	0.2299	0.00012822	557.739843843578	72.944	0.55508	72.944	72.726	73.281	0					33	19	2	0	0	0	0.0011817	1	18627	18627		120.45	49.317	1	282960			56915	5566	32560	32561	69781	69781					-0.08670235301565299
VYSSDYFSF	9	Unmodified	_VYSSDYFSF_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7399291992188	2	557.740022	1113.46549	0.3284	0.00018316	-0.29249	-0.00016314	0.035904	2.0025E-05	557.7396315973759	72.888	0.49056	72.942	72.681	73.172	0.053833					33	17	3	0	0	0	0.0037552	1	18609	18609		96.285	50.264	1	228550			56916	5566	32560	32561	69782	69782					-0.08670235301565299
VYSSDYFSF	9	Unmodified	_VYSSDYFSF_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7399291992188	2	557.740022	1113.46549	0.40209	0.00022426	-0.21001	-0.00011713	0.19208	0.00010713	557.7396389522809	72.95	0.52883	72.92	72.738	73.266	-0.029305					36	18	3	0	0	0	0.0041925	2	18645	18594;18645		92.822	44.476	1	209970			56917	5566	32560	32561	69783;69784	69784					-0.08670235301565299
VYSSFFAWF	9	Unmodified	_VYSSFFAWF_					0	0	0		ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.2452392578125	2	577.271293	1152.52803	0.083392	4.814E-05	2.6711	0.0015419	2.7545	0.0015901	577.2728625031627	25.614	0.78584	25.558	24.918	25.704	-0.055931					41	27	2	0	0	0	0.25879	1	4070	4070		4.756	0.81161	1	68823			56918	3345	32561	32562	69785	69785					-0.04213044442735736
VYSSVVDLNNT	11	Unmodified	_VYSSVVDLNNT_					0	0	0			REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1	REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.2156982421875	3	404.203187	1209.58773	0.10061	4.0668E-05	0.80771	0.00032648	0.90832	0.00036715	404.2035074338881	29.421	0.33323	29.421	29.3	29.633	0					19	11	2	0	0	0	0.38765	1	5266	5266		12.856	3.8797	1	71829	+		56919	17538	32562	32563	69786	69786					-0.008678182899984677
VYSSVVDLNNT	11	Unmodified	_VYSSVVDLNNT_					0	0	0			REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1	REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.21575927734375	3	404.203187	1209.58773	-0.30228	-0.00012218	1.4401	0.0005821	1.1378	0.00045992	404.2036770107744	29.511	0.31978	29.525	29.274	29.594	0.013474					14	10	2	0	0	0	0.38765	1	5251	5251		12.856	3.8797	1	77427	+		56920	17538	32562	32563	69787	69787					-0.008678182899984677
VYSTFGFSF	9	Unmodified	_VYSTFGFSF_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3027954101562	2	527.74765	1053.48075	0.59173	0.00031228	0.69214	0.00036527	1.2839	0.00067756	527.7473775740818	83.307	0.38029	83.381	83.21	83.59	0.073097					20	13	2	0	0	0	0.12743	1	21769	21769		46.021	27.886	1	123510			56921	7532	32563	32564	69788	69788					-0.04385323713722755
VYSTFGFSF	9	Unmodified	_VYSTFGFSF_					0	0	0		ENSG00000185418|ENST00000335968|TARS3;nc|ENSG00000185418|A2RTX5-2|TARS3	ENSG00000185418|ENST00000335968|TARS3	ENSG00000185418|ENST00000335968|TARS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3028564453125	2	527.74765	1053.48075	0.70107	0.00036999	0.59978	0.00031653	1.3009	0.00068653	527.7473903635243	83.429	0.49282	83.413	83.23	83.723	-0.016823					32	20	2	0	0	0	0.0082143	1	21799	21799		88.904	60.417	1	267790			56922	7532	32563	32564	69789	69789					-0.04385323713722755
VYSTMLVFF	9	Oxidation (M)	_VYSTM(Oxidation (M))LVFF_		VYSTM(1)LVFF		VYSTM(60)LVFF	0	0	1		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3433227539062	2	561.780636	1121.54672	0.55667	0.00031273	-0.36412	-0.00020456	0.19255	0.00010817	561.7801703559643	83.601	0.80331	83.601	83.279	84.082	0					67	31	4	0	0	0	0.072564	1	21910	21910		60.39	30.165	1	699880			56923	1901	32564	32565	69790	69790		235			-0.009192508631713281
VYSTMLVFF	9	Oxidation (M)	_VYSTM(Oxidation (M))LVFF_		VYSTM(1)LVFF		VYSTM(54)LVFF	0	0	1		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7809448242188	2	561.780636	1121.54672	0.5271	0.00029611	0.038833	2.1816E-05	0.56593	0.00031793	561.7802588256828	83.492	0.8938	83.569	83.032	83.925	0.077095					83	34	4	0	0	0	0.089551	1	21853	21853		53.576	23.351	1	559520			56924	1901	32564	32565	69791	69791		235			-0.009192508631713281
VYSTMLVFF	9	Oxidation (M)	_VYSTM(Oxidation (M))LVFF_		VYSTM(1)LVFF		VYSTM(78)LVFF	0	0	1		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3431396484375	2	561.780636	1121.54672	0.46537	0.00026144	0.022188	1.2465E-05	0.48756	0.0002739	561.7802959317617	83.663	0.74374	83.647	83.211	83.955	-0.016823					76	32	3	0	0	0	0.025459	1	21878	21878		77.984	47.76	1	671860			56925	1901	32564	32565	69792	69792		235			-0.009192508631713281
VYSTPTPFF	9	Unmodified	_VYSTPTPFF_					0	0	0		ENSG00000015285|ENST00000376701|WAS	ENSG00000015285|ENST00000376701|WAS	ENSG00000015285|ENST00000376701|WAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7635498046875	2	529.7633	1057.51205	0.62992	0.00033371	0.14739	7.808E-05	0.7773	0.00041179	529.7632415313653	72.84	1.0695	72.811	72.516	73.585	-0.029305					79	38	4	0	0	0	0.00268	1	18574	18574		104.8	66.648	1	1008400			56926	480	32565	32566	69793	69793					-0.01440750679626035
VYSVTTPLF	9	Unmodified	_VYSVTTPLF_					0	0	0		ENSG00000176198|ENST00000641082|OR11H4;nc|ENSG00000176198|Q8NGC9|OR11H4	ENSG00000176198|ENST00000641082|OR11H4	ENSG00000176198|ENST00000641082|OR11H4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.7677612304688	2	513.778951	1025.54335	0.16529	8.4921E-05	-0.93713	-0.00048148	-0.77184	-0.00039655	513.7783808236496	73.954	0.74209	73.954	73.632	74.374	0					49	24	3	0	0	0	0.20344	1	18908	18908		23.148	1.4018	1	907730			56927	6907	32566	32567	69794	69794					0.031598223544506254
VYTAEVIRAG	10	Unmodified	_VYTAEVIRAG_					0	0	0		ENSG00000186806|ENST00000335624|VSIG10L;nc|ENSG00000186806|Q86VR7-2|VSIG10L	ENSG00000186806|ENST00000335624|VSIG10L	ENSG00000186806|ENST00000335624|VSIG10L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8184204101562	2	539.798206	1077.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.627	1	93.713	93.213	94.213	0.08667								0	0	0	0.34454	1	24942	24942		17.113	3.2068	1				56928	7643	32567	32568	69795	69795					0.046171279889904326
VYTAEVIRAG	10	Unmodified	_VYTAEVIRAG_					0	0	0		ENSG00000186806|ENST00000335624|VSIG10L;nc|ENSG00000186806|Q86VR7-2|VSIG10L	ENSG00000186806|ENST00000335624|VSIG10L	ENSG00000186806|ENST00000335624|VSIG10L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.818359375	2	539.798206	1077.58186	0.39514	0.0002133	1.2378	0.00066815	1.6329	0.00088145	539.798059660845	93.777	0.31454	93.863	93.722	94.036	0.08667					39	24	2	0	0	0	0.30093	1	24985	24985		16.149	3.1066	1	84490			56929	7643	32567	32568	69796	69796					0.046171279889904326
VYTAEVIRAG	10	Unmodified	_VYTAEVIRAG_					0	0	0		ENSG00000186806|ENST00000335624|VSIG10L;nc|ENSG00000186806|Q86VR7-2|VSIG10L	ENSG00000186806|ENST00000335624|VSIG10L	ENSG00000186806|ENST00000335624|VSIG10L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8291625976562	2	539.798206	1077.58186	0.43117	0.00023275	-0.22399	-0.00012091	0.20718	0.00011184	539.7985710641614	67.38	1.3608	67.364	66.839	68.2	-0.016296					88	47	3	0	0	0	0.255	1	16751	16751		27.629	2.6378	1	258370			56930	7643	32567	32568	69797	69797					0.046171279889904326
VYTATVPEM	9	Oxidation (M)	_VYTATVPEM(Oxidation (M))_		VYTATVPEM(1)		VYTATVPEM(180)	0	0	1		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.7445068359375	2	513.74425	1025.47395	0.37914	0.00019478	-0.17874	-9.1829E-05	0.20039	0.00010295	513.7442501051498	40.213	1.7712	40.213	39.48	41.252	0					163	64	5	0	0	0	3.327E-09	3	8521	8521;8565;8615		180.01	105.59	1	9970600			56931	2497	32568	32569	69798;69799;69800	69798		306			-0.037770046565810844
VYTATVPEM	9	Oxidation (M)	_VYTATVPEM(Oxidation (M))_		VYTATVPEM(1)		VYTATVPEM(200)	0	0	1		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7444458007812	2	513.74425	1025.47395	0.48059	0.0002469	-0.18515	-9.5118E-05	0.29544	0.00015178	513.7441862758666	40.073	1.6029	40.166	39.75	41.353	0.09267					140	58	5	0	0	0	2.0431E-11	3	8520	8474;8520;8564		196.65	111.29	1	10462000			56932	2497	32568	32569	69801;69802;69803	69802		306			-0.037770046565810844
VYTATVPEM	9	Oxidation (M)	_VYTATVPEM(Oxidation (M))_		VYTATVPEM(1)		VYTATVPEM(200)	0	0	1		nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6;CDH6|p.K341Cfs*36|1|0.21|ENSG00000113361|chr5:31305192-31305195|AAGA/-|frameshift_variant	nc|ENSG00000113361|P55285-2|CDH6	nc|ENSG00000113361|P55285-2|CDH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7445678710938	2	513.74425	1025.47395	0.30337	0.00015585	-0.039832	-2.0463E-05	0.26354	0.00013539	513.7442816619273	40.034	1.2025	40.134	39.788	40.99	0.099407					125	43	5	0	0	0	2.0431E-11	3	8512	8464;8512;8555		196.65	111.29	1	11361000			56933	2497	32568	32569	69804;69805;69806	69805		306			-0.037770046565810844
VYTCLPESL	9	Unmodified	_VYTCLPESL_					0	0	0		nc|ENSG00000147650|Q9Y561-2|LRP12;ENSG00000147650|ENST00000276654|LRP12	nc|ENSG00000147650|Q9Y561-2|LRP12	nc|ENSG00000147650|Q9Y561-2|LRP12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.754638671875	2	512.754618	1023.49468	0.078115	4.0054E-05	0.79478	0.00040753	0.8729	0.00044758	512.7547485741194	29.165	0.72481	29.179	28.959	29.684	0.013474					54	25	3	0	0	0	0.24581	1	5154	5154		16.942	1.0951	1	699670			56934	4778	32569	32570	69807	69807					-0.01612414276939944
VYTDFAFRI	9	Unmodified	_VYTDFAFRI_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.2960815429688	2	566.295299	1130.57605	0.26299	0.00014893	0.82847	0.00046916	1.0915	0.00061809	566.2957026642364	68.274	1.4011	68.274	67.997	69.398	0					143	51	4	0	0	0	0.00012108	3	17196	17151;17196;17248		137.42	72.189	1	6087300			56935	5568	32570	32571	69808;69809;69810	69809					0.015980294773271453
VYTDFAFRI	9	Unmodified	_VYTDFAFRI_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.2960205078125	2	566.295299	1130.57605	0.33882	0.00019187	0.63446	0.00035929	0.97328	0.00055117	566.2955640659014	68.225	1.4417	68.297	67.796	69.237	0.071938					147	52	5	0	0	0	4.3881E-05	3	17179	17128;17179;17228		149.91	74.985	1	5500200			56936	5568	32570	32571	69811;69812;69813	69812					0.015980294773271453
VYTDFAFRI	9	Unmodified	_VYTDFAFRI_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.2960205078125	2	566.295299	1130.57605	0.32926	0.00018646	0.69033	0.00039093	1.0196	0.00057739	566.2955991018353	68.316	1.5006	68.297	67.906	69.407	-0.019157					146	53	4	0	0	0	0.00012108	3	17204	17153;17204;17258		137.42	72.189	1	6590900			56937	5568	32570	32571	69814;69815;69816	69815					0.015980294773271453
VYTDILIGL	9	Unmodified	_VYTDILIGL_					0	0	0		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.79425048828125	2	503.794601	1005.57465	0.53246	0.00026825	-0.30822	-0.00015528	0.22423	0.00011297	503.7942968331859	85.5	0.81871	85.5	84.972	85.791	0					74	31	4	0	0	0	0.072844	1	22437	22437		44.407	0	1	417920			56938	4930	32571	32572	69817	69817					0.07208395388579447
VYTDILIGL	9	Unmodified	_VYTDILIGL_					0	0	0		ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	ENSG00000150990|ENST00000308736|DHX37	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	503.794601	1005.57465	0.53566	0.00026986	-0.38226	-0.00019258	0.15341	7.7286E-05	503.79437932093794	85.452	0.84126	85.439	84.977	85.818	-0.01284	-0.030502	-5.4867E-05	NaN	44.407	72	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315150			56939	4930	32571	32572							0.07208395388579447
VYTDRFHLI	9	Unmodified	_VYTDRFHLI_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.7761840820312	2	582.314023	1162.61349	0.74418	0.00043335	-0.38885	-0.00022643	0.35533	0.00020691	582.3139103904642	50.161	0.37341	50.181	50.014	50.387	0.020691					21	13	2	0	0	0	0.21538	1	11579	11579		26.268	14.773	1	140160			56940	3427	32572	32573	69818	69818					0.03869120742956511
VYTDRFHLI	9	Unmodified	_VYTDRFHLI_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	582.314023	1162.61349	0.3795	0.00022099	-0.37598	-0.00021894	0.0035125	2.0454E-06	582.3136887154773	50.164	0.34379	50.164	49.923	50.267	0	-0.0085604	1.0809E-05	NaN	26.268	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201280			56941	3427	32572	32573							0.03869120742956511
VYTEAIADI	9	Unmodified	_VYTEAIADI_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7585144042969	2	497.758215	993.501877	0.74266	0.00036967	-0.82602	-0.00041116	-0.083354	-4.149E-05	497.7579139299756	60.706	0.39695	60.803	60.552	60.949	0.096985					37	13	4	0	0	0	0.051692	1	14888	14888		52.268	20.151	1	702450			56942	3229	32573	32574	69819	69819					0.004866415951369163
VYTEAIADI	9	Unmodified	_VYTEAIADI_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7585754394531	2	497.758215	993.501877	0.69953	0.00034819	-0.25078	-0.00012483	0.44874	0.00022337	497.7580487604227	60.832	0.58913	60.822	60.487	61.077	-0.0094528					36	21	3	0	0	0	0.051692	1	14908	14908		52.268	6.2474	1	677630			56943	3229	32573	32574	69820	69820					0.004866415951369163
VYTEAIADI	9	Unmodified	_VYTEAIADI_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	497.758215	993.501877	0.75038	0.00037351	-0.21124	-0.00010515	0.53914	0.00026836	497.75795156033934	60.85	0.38447	60.85	60.607	60.992	0	0.024463	0.00014994	NaN	52.268	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	852800			56944	3229	32573	32574							0.004866415951369163
VYTEGSSLSYP	11	Unmodified	_VYTEGSSLSYP_					0	0	0			REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.7963256835938	2	601.782418	1201.55028	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.802	1	63.792	63.292	64.292	-0.0095329								0	0	0	0.30488	1	15812	15812		18.146	4.2403	1		+		56945	16820	32574	32575	69821	69821					-0.0424290955561446
VYTFGLNIF	9	Unmodified	_VYTFGLNIF_					0	0	0		ENST00000505222.5_1_6:82901346-82950269:-|nuORF;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK	ENST00000505222.5_1_6:82901346-82950269:-|nuORF	ENST00000505222.5_1_6:82901346-82950269:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.8078002929688	2	537.286943	1072.55933	0.34989	0.00018799	0.13347	7.1714E-05	0.48337	0.00025971	537.2867808821087	92.915	0.41333	93.004	92.777	93.19	0.089203					51	38	2	0	0	0	0.2451	1	24665	24665		15.847	2.3393	1	77984			56946	340	32575	32576	69822	69822					0.025955285913596526
VYTFGPKLN	9	Unmodified	_VYTFGPKLN_					0	0	0		ENST00000401424.5_1_11:13299386-13371514:+|nuORF;ENST00000534544.5_2_11:13298505-13371514:+|nuORF;ENST00000530357.5_1_11:13299386-13348012:+|nuORF;ENST00000389707.8_1_11:13299386-13371534:+|nuORF;ENST00000529825.5_1_11:13299386-13376821:+|nuORF	ENST00000401424.5_1_11:13299386-13371514:+|nuORF	ENST00000401424.5_1_11:13299386-13371514:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.8025512695312	2	519.784567	1037.55458	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.517	1	66.517	66.017	67.017	0								0	0	0	0.20639	1	16653	16653		20.454	1.1966	1				56947	10022	32576	32577	69823	69823					0.03730644448637577
VYTFLSSTL	9	Unmodified	_VYTFLSSTL_					0	0	0		nc|ENSG00000091831|P03372-3|ESR1;nc|ENSG00000091831|P03372-2|ESR1;ENSG00000091831|ENST00000206249|ESR1	nc|ENSG00000091831|P03372-3|ESR1	nc|ENSG00000091831|P03372-3|ESR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2478637695312	2	515.776408	1029.53826	0.35158	0.00018134	0.93169	0.00048054	1.2833	0.00066188	515.7763321251582	75.282	0.69937	75.282	75.012	75.711	0					56	24	4	0	0	0	0.065123	1	19344	19344		54.774	8.7526	1	504540			56948	1410	32577	32578	69824	69824					0.024675184918578452
VYTFLSSTL	9	Unmodified	_VYTFLSSTL_					0	0	0		nc|ENSG00000091831|P03372-3|ESR1;nc|ENSG00000091831|P03372-2|ESR1;ENSG00000091831|ENST00000206249|ESR1	nc|ENSG00000091831|P03372-3|ESR1	nc|ENSG00000091831|P03372-3|ESR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2479248046875	2	515.776408	1029.53826	0.31004	0.00015991	0.69592	0.00035894	1.006	0.00051885	515.776336877653	75.249	0.54202	75.301	75.076	75.618	0.052361					50	19	3	0	0	0	0.037153	1	19317	19317		64.236	2.8788	1	378780			56949	1410	32577	32578	69825	69825					0.024675184918578452
VYTFLSSTL	9	Unmodified	_VYTFLSSTL_					0	0	0		nc|ENSG00000091831|P03372-3|ESR1;nc|ENSG00000091831|P03372-2|ESR1;ENSG00000091831|ENST00000206249|ESR1	nc|ENSG00000091831|P03372-3|ESR1	nc|ENSG00000091831|P03372-3|ESR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.247802734375	2	515.776408	1029.53826	0.41756	0.00021537	0.30513	0.00015738	0.72269	0.00037275	515.7762671294468	75.303	0.82678	75.271	74.922	75.749	-0.031479					52	30	2	0	0	0	0.0082143	1	19340	19340		68.081	15.812	1	455830			56950	1410	32577	32578	69826	69826					0.024675184918578452
VYTFQFQDF	9	Unmodified	_VYTFQFQDF_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.7774047851562	2	597.776939	1193.53933	0.4511	0.00026966	-0.11258	-6.7297E-05	0.33852	0.00020236	597.7767604127896	80.379	0.7793	80.379	79.953	80.733	0					67	28	3	0	0	0	0.00010125	3	20845	20845;20889;20940		140.63	91.079	1	892670			56951	1828	32578	32579	69827;69828;69829	69827					-0.049702671392424236
VYTFQFQDF	9	Unmodified	_VYTFQFQDF_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.7769165039062	2	597.776939	1193.53933	0.40212	0.00024038	0.24874	0.00014869	0.65086	0.00038907	597.7768269407179	80.266	1.0448	80.332	80.029	81.074	0.065102					84	41	3	0	0	0	6.549E-06	2	20853	20853;20900		155.95	106.4	1	816710			56952	1828	32578	32579	69830;69831	69830					-0.049702671392424236
VYTFQFQDF	9	Unmodified	_VYTFQFQDF_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.7769775390625	2	597.776939	1193.53933	0.39775	0.00023777	-0.078201	-4.6747E-05	0.31955	0.00019102	597.7767962623141	80.437	1.2098	80.41	80.114	81.324	-0.026825					93	46	3	0	0	0	1.4641E-16	3	20894	20848;20894;20944		209.87	148.27	1	1027100			56953	1828	32578	32579	69832;69833;69834	69833					-0.049702671392424236
VYTGLFYKL	9	Unmodified	_VYTGLFYKL_					0	0	0		nc|ENSG00000170917|P53370-2|NUDT6;ENSG00000170917|ENST00000304430|NUDT6	nc|ENSG00000170917|P53370-2|NUDT6	nc|ENSG00000170917|P53370-2|NUDT6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3003540039062	2	552.310418	1102.60628	0.065886	3.6389E-05	-0.47593	-0.00026286	-0.41004	-0.00022647	552.3099794315943	65.13	0.59711	65.13	64.834	65.431	0					49	21	3	0	0	0	0.25989	1	16208	16208		14.838	1.3304	1	576920			56954	6496	32579	32580	69835	69835					0.059083881425067375
VYTGLFYKL	9	Unmodified	_VYTGLFYKL_					0	0	0		nc|ENSG00000170917|P53370-2|NUDT6;ENSG00000170917|ENST00000304430|NUDT6	nc|ENSG00000170917|P53370-2|NUDT6	nc|ENSG00000170917|P53370-2|NUDT6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.3106079101562	2	552.310418	1102.60628	0.019274	1.0645E-05	0.18726	0.00010343	0.20653	0.00011407	552.3102479998637	65.148	0.64422	65.136	64.86	65.504	-0.011337					51	23	3	0	0	0	0.014206	2	16255	16229;16255		72.968	45.339	1	524150			56955	6496	32579	32580	69836;69837	69837					0.059083881425067375
VYTHFLSSF	9	Unmodified	_VYTHFLSSF_					0	0	0		ENSG00000174032|ENST00000519676|SLC25A30;nc|ENSG00000174032|Q5SVS4-2|SLC25A30;ENST00000523988.5_1_13:45973026-45978512:-|nuORF	ENSG00000174032|ENST00000519676|SLC25A30	ENSG00000174032|ENST00000519676|SLC25A30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.7742919921875	2	550.7742	1099.53385	0.28615	0.0001576	-0.13551	-7.4633E-05	0.15064	8.297E-05	550.7739698825329	60.348	0.78588	60.348	60.065	60.851	0					73	28	4	0	0	0	5.6213E-07	2	14753	14709;14753		158.2	92.968	1	3603100			56956	6769	32580	32581	69838;69839	69839					-0.011939459310497114
VYTHFLSSF	9	Unmodified	_VYTHFLSSF_					0	0	0		ENSG00000174032|ENST00000519676|SLC25A30;nc|ENSG00000174032|Q5SVS4-2|SLC25A30;ENST00000523988.5_1_13:45973026-45978512:-|nuORF	ENSG00000174032|ENST00000519676|SLC25A30	ENSG00000174032|ENST00000519676|SLC25A30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.77392578125	2	550.7742	1099.53385	0.083895	4.6207E-05	-0.12192	-6.715E-05	-0.038023	-2.0942E-05	550.7740330385363	60.209	0.90068	60.304	60.047	60.947	0.095089					77	32	4	0	0	0	0.00012782	2	14688	14688;14740		136.33	71.098	1	3287900			56957	6769	32580	32581	69840;69841	69840					-0.011939459310497114
VYTHFLSSF	9	Unmodified	_VYTHFLSSF_					0	0	0		ENSG00000174032|ENST00000519676|SLC25A30;nc|ENSG00000174032|Q5SVS4-2|SLC25A30;ENST00000523988.5_1_13:45973026-45978512:-|nuORF	ENSG00000174032|ENST00000519676|SLC25A30	ENSG00000174032|ENST00000519676|SLC25A30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.774169921875	2	550.7742	1099.53385	0.47949	0.00026409	-0.13101	-7.2159E-05	0.34848	0.00019193	550.773992183317	60.38	0.80135	60.368	60.085	60.886	-0.011486					81	29	3	0	0	0	4.0037E-07	2	14773	14728;14773		164.52	103.16	1	3717600			56958	6769	32580	32581	69842;69843	69843					-0.011939459310497114
VYTHNLYYL	9	Unmodified	_VYTHNLYYL_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.3008422851562	2	593.300581	1184.58661	0.58239	0.00034553	-0.98116	-0.00058212	-0.39877	-0.00023659	593.2999170268222	53.462	0.90189	53.462	53.148	54.05	0					93	33	4	0	0	0	0.014888	2	12595	12595;12641		71.922	31.965	1	2547200			56959	8173	32581	32582	69844;69845	69844					0.001700121317526282
VYTHNLYYL	9	Unmodified	_VYTHNLYYL_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.2996215820312	2	593.300581	1184.58661	0.43424	0.00025763	-0.72239	-0.00042859	-0.28815	-0.00017096	593.3001246143331	53.389	0.91445	53.445	53.167	54.081	0.056259					82	34	3	0	0	0	0.010453	2	12582	12582;12629		78.728	38.771	1	2504700			56960	8173	32581	32582	69846;69847	69846					0.001700121317526282
VYTHNLYYL	9	Unmodified	_VYTHNLYYL_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.3007202148438	2	593.300581	1184.58661	0.49948	0.00029634	-0.80758	-0.00047914	-0.30811	-0.0001828	593.3000837296462	53.686	1.0388	53.676	53.329	54.368	-0.0096054					91	38	4	0	0	0	0.050251	1	12660	12660		62.573	37.173	1	3014600			56961	8173	32581	32582	69848	69848					0.001700121317526282
VYTKACVHM	9	Unmodified	_VYTKACVHM_					0	0	0		L1MC1_dup4818|chr5:157018062-157020331:+|1.2048631609900489|0.0442921674053822|4.77|515.0|78|3|sense	L1MC1_dup4818|chr5:157018062-157020331:+|1.2048631609900489|0.0442921674053822|4.77|515.0|78|3|sense	L1MC1_dup4818|chr5:157018062-157020331:+|1.2048631609900489|0.0442921674053822|4.77|515.0|78|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2571411132812	2	526.256805	1050.49906	0.2538	0.00013356	0.97423	0.0005127	1.228	0.00064626	526.2572505175833	59.571	0.57872	59.666	59.382	59.961	0.095089					48	20	3	0	0	0	0.18803	1	14541	14541		25.399	0.72543	1	1055600			56962	12457	32582	32583	69849	69849					-0.024172283350253565
VYTKEYTQITG	11	Unmodified	_VYTKEYTQITG_					0	0	0		ENST00000399725.6_1_18:20513876-20514098:+|nuORF	ENST00000399725.6_1_18:20513876-20514098:+|nuORF	ENST00000399725.6_1_18:20513876-20514098:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.88226318359375	3	434.890721	1301.65033	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.592	1	30.592	30.092	31.092	0								0	0	0	0.37347	1	5617	5617		3.0723	0.44103	1				56963	10180	32583	32584	69850	69850					0.011573277781735669
VYTKNYTL	8	Unmodified	_VYTKNYTL_					0	0	0			REV__ENSG00000131389|ENST00000622186|SLC6A6	REV__ENSG00000131389|ENST00000622186|SLC6A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2680358886719	2	501.26875	1000.52295	0.50691	0.0002541	-2.5073	-0.0012568	-2.0004	-0.0010027	501.7682683045299	83.351	0.81602	83.424	83.078	83.894	0.073097					49	31	2	0	0	0	0.34185	1	21838	21838		10.183	1.5901	1	216380	+		56964	15510	32584	32585	69851	69851					0.0227065169465277
VYTLDIPVL	9	Unmodified	_VYTLDIPVL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8026733398438	2	516.802426	1031.5903	0.51379	0.00026553	-1.2737	-0.00065825	-0.7599	-0.00039272	516.8024227018049	87.617	1.0866	87.617	87.216	88.302	0					82	52	2	0	0	0	0.088391	2	23101	23101;23146		39.957	11.47	1	348920			56965	5256	32585	32586	69852;69853	69852					0.07576681905607074
VYTLDIPVL	9	Unmodified	_VYTLDIPVL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.8028564453125	2	516.802426	1031.5903	0.34548	0.00017854	-1.5945	-0.00082403	-1.249	-0.00064549	516.8025359522361	87.473	1.7648	87.56	86.464	88.229	0.087097					110	84	2	0	0	0	0.1669	1	23093	23093		28.487	5.3384	1	405860			56966	5256	32585	32586	69854	69854					0.07576681905607074
VYTLDIPVL	9	Unmodified	_VYTLDIPVL_					0	0	0		ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.8027954101562	2	516.802426	1031.5903	0.35684	0.00018441	-0.92833	-0.00047976	-0.57149	-0.00029535	516.8025375483137	87.582	0.96651	87.577	87.024	87.991	-0.0056229					90	49	3	0	0	0	0.019896	2	23070	23070;23118		64.236	28.192	1	428320			56967	5256	32585	32586	69855;69856	69855					0.07576681905607074
VYTLGTPLL	9	Unmodified	_VYTLGTPLL_					0	0	0		ENSG00000172772|ENST00000395079|OR10W1	ENSG00000172772|ENST00000395079|OR10W1	ENSG00000172772|ENST00000395079|OR10W1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.789306640625	2	488.789318	975.564084	0.46957	0.00022952	0.2428	0.00011868	0.71237	0.0003482	488.78962666612426	87.047	1.1093	87.047	86.571	87.68	0					79	46	2	0	0	0	0.22188	1	22904	22904		20.454	1.1966	1	682240			56968	6662	32586	32587	69857	69857					0.075324127341446
VYTLKVAVF	9	Unmodified	_VYTLKVAVF_					0	0	0		ENST00000554929.1_1_14:70237619-70238175:+|nuORF	ENST00000554929.1_1_14:70237619-70238175:+|nuORF	ENST00000554929.1_1_14:70237619-70238175:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.30029296875	2	520.312961	1038.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.716	1	62.708	62.208	63.208	-0.0085526								0	0	0	0.20953	1	15479	15479		19.439	9.2556	1				56969	11839	32587	32588	69858	69858					0.09360692005134297
VYTLLGPSGF	10	Unmodified	_VYTLLGPSGF_					0	0	0			REV__ENSG00000130479|ENST00000324096|MAP1S	REV__ENSG00000130479|ENST00000324096|MAP1S	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.302001953125	2	527.2844	1052.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.893	1	83.877	83.377	84.377	-0.016823								0	0	0	0.34994	1	21954	21954		14.838	2.3067	1		+		56970	15459	32588	32589	69859	69859					0.030072247287534992
VYTLLTTHL	9	Unmodified	_VYTLLTTHL_					0	0	0		nc|ENSG00000173715|Q8N6T0-5|TOP6BL;ENSG00000173715|ENST00000540737|C11orf80;nc|ENSG00000173715|Q8N6T0-4|TOP6BL;nc|ENSG00000173715|Q8N6T0-1|TOP6BL	nc|ENSG00000173715|Q8N6T0-5|TOP6BL	nc|ENSG00000173715|Q8N6T0-5|TOP6BL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3037109375	2	530.8055	1059.59645	-0.24349	-0.00012924	-3.401	-0.0018052	-3.6444	-0.0019345	531.3052021457119	60.018	1.4568	60.113	59.382	60.839	0.095093					91	52	3	0	0	0	0.0011817	2	14638	14622;14638		120.45	74.751	1	1545700			56971	6746	32589	32590	69860;69861	69861					0.06903200137116983
VYTLLTTHL	9	Unmodified	_VYTLLTTHL_					0	0	0		nc|ENSG00000173715|Q8N6T0-5|TOP6BL;ENSG00000173715|ENST00000540737|C11orf80;nc|ENSG00000173715|Q8N6T0-4|TOP6BL;nc|ENSG00000173715|Q8N6T0-1|TOP6BL	nc|ENSG00000173715|Q8N6T0-5|TOP6BL	nc|ENSG00000173715|Q8N6T0-5|TOP6BL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3033447265625	2	530.8055	1059.59645	0.30612	0.00016249	-3.8665	-0.0020524	-3.5604	-0.0018899	530.8055068488492	60.088	0.75212	60.076	59.652	60.404	-0.011486					63	26	4	0	0	0	0.0011817	2	14658	14658;14670		120.45	74.751	1	1426600			56972	6746	32589	32590	69862;69863	69862					0.06903200137116983
VYTLVIVPR	9	Unmodified	_VYTLVIVPR_					0	0	0		ENSG00000184155|ENST00000334857|OR10J5	ENSG00000184155|ENST00000334857|OR10J5	ENSG00000184155|ENST00000334857|OR10J5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.761474609375	2	530.331685	1058.64882	0.21142	0.00011212	0.37443	0.00019857	0.58585	0.0003107	530.3318986355777	42.351	0.29221	42.351	42.251	42.543	0					19	10	2	0	0	0	0.25417	1	9259	9259		8.5933	0.68312	1	382510			56973	7431	32590	32591	69864	69864					0.12183783270756976
VYTPTDTLVF	10	Unmodified	_VYTPTDTLVF_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENST00000525379.1_1_11:66985159-66986889:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.3010864257812	2	578.300247	1154.58594	0.56263	0.00032537	0.54235	0.00031364	1.105	0.00063901	578.3006165115247	74.52	0.82108	74.52	74.191	75.012	0					61	28	3	0	0	0	0.00080269	2	19111	19066;19111		123.45	103	1	2367300			56974	6693	32591	32592	69865;69866	69866					0.014831726920419896
VYTPTDTLVF	10	Unmodified	_VYTPTDTLVF_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENST00000525379.1_1_11:66985159-66986889:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3009643554688	2	578.300247	1154.58594	0.29427	0.00017018	0.67608	0.00039098	0.97035	0.00056115	578.3006471454719	74.469	0.78845	74.522	74.236	75.024	0.052361					71	27	4	0	0	0	0.00080269	2	19098	19042;19098		123.45	103	1	2245700			56975	6693	32591	32592	69867;69868	69868					0.014831726920419896
VYTPTDTLVF	10	Unmodified	_VYTPTDTLVF_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENST00000525379.1_1_11:66985159-66986889:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.3009643554688	2	578.300247	1154.58594	0.44534	0.00025754	0.54767	0.00031672	0.99301	0.00057426	578.300635120055	74.547	0.73723	74.516	74.295	75.032	-0.030655					63	25	3	0	0	0	0.00043559	2	19115	19065;19115		128.37	102.97	1	2347600			56976	6693	32591	32592	69869;69870	69870					0.014831726920419896
VYTPVDEHV	9	Unmodified	_VYTPVDEHV_					0	0	0		ENST00000482108.1_2_7:94293788-94294991:+|nuORF;nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10	ENST00000482108.1_2_7:94293788-94294991:+|nuORF	ENST00000482108.1_2_7:94293788-94294991:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3140258789062	2	529.761289	1057.50803	0.58374	0.00030925	-2.1303	-0.0011285	-1.5465	-0.00081929	530.2612469123528	65.52	0.44628	65.52	65.293	65.739	0					21	15	2	0	0	0	0.24913	1	16304	16304		12.532	0.89125	1	181060			56977	8543	32592	32593	69871	69871					-0.018428401733444844
VYTQHQPFL	9	Unmodified	_VYTQHQPFL_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.79296875	2	566.792924	1131.57129	0.40745	0.00023094	0.12389	7.0222E-05	0.53134	0.00030116	566.7929074976556	43.663	0.61914	43.741	43.483	44.102	0.077515					60	22	4	0	0	0	9.2305E-05	2	9611	9611;9659		142.08	100.24	1	923430			56978	3986	32593	32594	69872;69873	69872					0.01077145334556917
VYTQHQPFL	9	Unmodified	_VYTQHQPFL_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.7929077148438	2	566.792924	1131.57129	0.32535	0.00018441	-0.076793	-4.3525E-05	0.24856	0.00014088	566.7928891457401	43.657	0.55703	43.741	43.463	44.02	0.083996					48	20	3	0	0	0	0.00045155	1	9631	9631		129.77	93.645	1	1162700			56979	3986	32593	32594	69874	69874					0.01077145334556917
VYTQHQPFL	9	Unmodified	_VYTQHQPFL_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	566.792924	1131.57129	0.19894	0.00011276	0.35619	0.00020189	0.55514	0.00031465	566.7930942609572	43.938	0.64935	43.938	43.656	44.306	0	0.13116	0.00023361	NaN	142.08	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	876180			56980	3986	32593	32594							0.01077145334556917
VYTSAYLLV	9	Unmodified	_VYTSAYLLV_					0	0	0			REV__nc|ENSG00000187258|Q6W5P4-5|NPSR1	REV__nc|ENSG00000187258|Q6W5P4-5|NPSR1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.786865234375	2	514.786776	1027.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.193	1	81.193	80.693	81.693	0								0	0	0	0.19804	1	21138	21138		23.148	0	1		+		56981	18500	32594	32595	69875	69875					0.04632108871487617
VYTSGIYNI	9	Unmodified	_VYTSGIYNI_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2666015625	2	515.266207	1028.51786	0.09239	4.7605E-05	0.24424	0.00012585	0.33663	0.00017346	515.2664261984273	59.692	1.2812	59.692	59.326	60.607	0					120	45	3	0	0	0	1.8227E-16	3	14586	14541;14586;14685		205.78	130.85	1	26022000			56982	1129;12595	32595	32596	69876;69877;69878	69877					0.004743478320506256
VYTSGIYNI	9	Unmodified	_VYTSGIYNI_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2667236328125	2	515.266207	1028.51786	0.0066309	3.4167E-06	0.31966	0.00016471	0.32629	0.00016813	515.2664959640824	59.57	1.2565	59.665	59.294	60.55	0.095089					117	45	3	0	0	0	4.1361E-11	3	14537	14493;14537;14635		189.78	121.7	1	25178000			56983	1129;12595	32595	32596	69879;69880;69881	69880					0.004743478320506256
VYTSGIYNI	9	Unmodified	_VYTSGIYNI_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.2666625976562	2	515.266207	1028.51786	0.25156	0.00012962	0.19401	9.9968E-05	0.44558	0.00022959	515.2663885696765	59.706	1.4276	59.695	59.116	60.544	-0.011486					149	50	5	0	0	0	1.8227E-16	3	14574	14531;14574;14669		205.78	130.85	1	24951000			56984	1129;12595	32595	32596	69882;69883;69884	69883					0.004743478320506256
VYTSGVYHI	9	Unmodified	_VYTSGVYHI_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;TNS2|p.R491Gfs*29|1|0.24|ENSG00000111077|chr12:53059109-53059109|C/-|frameshift_variant;TNS2|p.T701Cfs*52|1|0.31|ENSG00000111077|chr12:53059738-53059747|GCCTACAGCA/-|frameshift_variant;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7664184570312	2	519.766374	1037.5182	0.3732	0.00019398	-0.0049106	-2.5524E-06	0.36829	0.00019142	519.7663253316573	43.697	1.4945	43.697	43.441	44.935	0					131	54	5	0	0	0	4.6753E-07	3	9592	9592;9639;9683		161.89	94.551	1	9738400			56985	2347	32596	32597	69885;69886;69887	69885					0.0009376755190260155
VYTSGVYHI	9	Unmodified	_VYTSGVYHI_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;TNS2|p.R491Gfs*29|1|0.24|ENSG00000111077|chr12:53059109-53059109|C/-|frameshift_variant;TNS2|p.T701Cfs*52|1|0.31|ENSG00000111077|chr12:53059738-53059747|GCCTACAGCA/-|frameshift_variant;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7665405273438	2	519.766374	1037.5182	0.48034	0.00024966	-0.18059	-9.3866E-05	0.29975	0.0001558	519.766274508367	43.415	1.6198	43.492	43.206	44.826	0.077515					146	59	6	0	0	0	4.6753E-07	4	9546	9495;9546;9599;9666		161.89	88.536	1	9681000			56986	2347	32596	32597	69888;69889;69890;69891	69889					0.0009376755190260155
VYTSGVYHI	9	Unmodified	_VYTSGVYHI_					0	0	0		nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;TNS2|p.R491Gfs*29|1|0.24|ENSG00000111077|chr12:53059109-53059109|C/-|frameshift_variant;TNS2|p.T701Cfs*52|1|0.31|ENSG00000111077|chr12:53059738-53059747|GCCTACAGCA/-|frameshift_variant;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	nc|ENSG00000111077|Q63HR2-2|TNS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7666015625	2	519.766374	1037.5182	0.42094	0.00021879	-0.10276	-5.3411E-05	0.31818	0.00016538	519.7662862948033	43.406	1.6534	43.49	43.19	44.844	0.083996					139	60	5	0	0	0	4.6753E-07	4	9527	9479;9527;9570;9623		161.89	94.551	1	8424100			56987	2347	32596	32597	69892;69893;69894;69895	69893					0.0009376755190260155
VYTSVSYEI	9	Unmodified	_VYTSVSYEI_					0	0	0			REV__ENST00000435041.2_1_6:90038920-90039049:-|nuORF	REV__ENST00000435041.2_1_6:90038920-90039049:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3032836914062	2	530.763497	1059.51244	0.56953	0.00030229	-1.859	-0.00098671	-1.2895	-0.00068442	530.7623206442256	62.41	0.58503	62.41	62.162	62.747	0					38	21	2	0	0	0	0.20651	1	15408	15408		20.454	3.3671	1	342030	+		56988	20989	32597	32598	69896	69896					-0.014933757504195455
VYTSVSYEI	9	Unmodified	_VYTSVSYEI_					0	0	0			REV__ENST00000435041.2_1_6:90038920-90039049:-|nuORF	REV__ENST00000435041.2_1_6:90038920-90039049:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.30322265625	2	530.763497	1059.51244	0.53853	0.00028583	-1.9567	-0.0010386	-1.4182	-0.00075273	530.7624921360639	62.328	0.69118	62.319	62.04	62.731	-0.0085526					41	25	2	0	0	0	0.20651	1	15387	15387		26.884	4.431	1	361410	+		56989	20989	32597	32598	69897	69897					-0.014933757504195455
VYTSVVEEL	9	Unmodified	_VYTSVVEEL_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.771484375	2	519.771322	1037.52809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.29	1	62.29	61.79	62.79	0								0	0	0	0.00048543	1	15359	15359		103.75	55.402	1				56990	460	32598	32599	69898	69898					0.010829107666040727
VYTSVVEEL	9	Unmodified	_VYTSVVEEL_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7716064453125	2	519.771322	1037.52809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.443	1	62.443	61.943	62.943	0								0	0	0	2.2393E-16	1	15406	15406		164.52	104.44	1				56991	460	32598	32599	69899	69899					0.010829107666040727
VYTSVVEEL	9	Unmodified	_VYTSVVEEL_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	519.7714233398438	2	519.771322	1037.52809	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.604	1	62.604	62.104	63.104	0								0	0	0	1.3754E-06	1	15455	15455		128.37	80.02	1				56992	460	32598	32599	69900	69900					0.010829107666040727
VYTSVVEEL	9	Unmodified	_VYTSVVEEL_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.7715454101562	2	519.771322	1037.52809	0.37547	0.00019516	0.39224	0.00020388	0.76771	0.00039903	519.7713079106595	62.316	1.6006	62.413	61.79	63.391	0.096985					132	58	4	0	0	0	4.3382E-05	3	15374	15327;15374;15427		149.99	107.9	1	5246300			56993	460	32598	32599	69901;69902;69903	69902					0.010829107666040727
VYTSVVEEL	9	Unmodified	_VYTSVVEEL_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7716064453125	2	519.771322	1037.52809	0.40098	0.00020842	0.2175	0.00011305	0.61848	0.00032147	519.7713041254284	62.34	1.5676	62.332	61.811	63.379	-0.0085526					126	57	4	0	0	0	0.00012782	3	15395	15347;15395;15447		136.33	94.239	1	5155400			56994	460	32598	32599	69904;69905;69906	69905					0.010829107666040727
VYTTNTILL	9	Unmodified	_VYTTNTILL_					0	0	0		nc|ENSG00000134755|Q02487-2|DSC2;ENSG00000134755|ENST00000280904|DSC2	nc|ENSG00000134755|Q02487-2|DSC2	nc|ENSG00000134755|Q02487-2|DSC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.2975463867188	2	519.297507	1036.58046	0.44704	0.00023215	3.6792	0.0019106	4.1263	0.0021428	519.8017609226881	66.328	1.3393	66.412	65.623	66.963	0.083832					115	48	5	0	0	0	0.0080395	1	16622	16622		82.529	42.572	1	813770			56995	3804	32599	32600	69907	69907					0.06363493900244066
VYTTTVHWL	9	Unmodified	_VYTTTVHWL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2953491210938	2	560.295299	1118.57605	0.12801	7.1726E-05	-0.28191	-0.00015795	-0.1539	-8.6228E-05	560.2951232987056	57.345	0.60883	57.328	56.946	57.555	-0.0172					64	21	4	0	0	0	0.00035727	1	13837	13837		131.3	91.34	1	1257500			56996	6781	32600	32601	69908	69908					0.021500294773204587
VYTTTVHWL	9	Unmodified	_VYTTTVHWL_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.295299	1118.57605	0.35665	0.00019983	-0.35412	-0.00019841	0.0025279	1.4163E-06	560.295006510359	57.014	0.70519	57.092	56.778	57.484	0.078674	-0.096864	-3.5403E-05	NaN	131.3	65	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1326600			56997	6781	32600	32601							0.021500294773204587
VYTVFILTL	9	Unmodified	_VYTVFILTL_					0	0	0			REV__Harlequin-int_dup238|chr6:111284651-111288187:-|7.344052110360552|0.2813414849289727|4.71|541.0|207|3|anti-sense	REV__Harlequin-int_dup238|chr6:111284651-111288187:-|7.344052110360552|0.2813414849289727|4.71|541.0|207|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.2674560546875	2	534.820618	1067.62668	-0.41259	-0.00022066	0.041125	2.1994E-05	-0.37146	-0.00019867	534.8207560878544	34.701	0.41345	34.778	34.675	35.088	0.077381					18	14	2	0	0	0	0.24913	1	6842	6842		12.532	3.9383	1	70958	+		56998	22700	32601	32602	69909	69909					0.09557558802316635
VYTVVDEMF	9	Oxidation (M)	_VYTVVDEM(Oxidation (M))F_		VYTVVDEM(1)F		VYTVVDEM(170)F	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7583618164062	2	559.757358	1117.50016	0.30919	0.00017307	-0.064716	-3.6225E-05	0.24447	0.00013685	559.7579377675652	62.191	2.1309	62.191	61.784	63.915	0					220	78	5	0	0	0	2.4571E-07	5	15356	15266;15309;15356;15405;15454		170.55	120.86	1	33019000			56999	614	32602	32603	69910;69911;69912;69913;69914	69912		72			-0.053887354851212876
VYTVVDEMF	9	Oxidation (M)	_VYTVVDEM(Oxidation (M))F_		VYTVVDEM(1)F		VYTVVDEM(180)F	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.75830078125	2	559.757358	1117.50016	0.21341	0.00011946	0.021117	1.1821E-05	0.23453	0.00013128	559.7579700872242	62.093	1.6267	62.19	61.79	63.417	0.096985					200	59	6	0	0	0	2.3311E-08	5	15282	15231;15282;15332;15372;15426		179.23	118.42	1	31704000			57000	614	32602	32603	69915;69916;69917;69918;69919	69916		72			-0.053887354851212876
VYTVVDEMF	9	Oxidation (M)	_VYTVVDEM(Oxidation (M))F_		VYTVVDEM(1)F		VYTVVDEM(42)F	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.3056640625	2	559.757358	1117.50016	0.49265	0.00027576	0.70816	0.0003964	1.2008	0.00067216	559.7578230082722	63.879	1.4346	63.972	63.474	64.909	0.09288					90	51	2	0	0	0	0.14099	1	15883	15883		42.095	26.247	1	258530			57001	614	32602	32603	69920	69920		72			-0.053887354851212876
VYTVVDEMF	9	Oxidation (M)	_VYTVVDEM(Oxidation (M))F_		VYTVVDEM(1)F		VYTVVDEM(170)F	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.7581787109375	2	559.757358	1117.50016	0.22934	0.00012837	0.012251	6.8573E-06	0.24159	0.00013523	559.7579549790033	62.183	1.8086	62.175	61.728	63.537	-0.0085526					213	66	6	0	0	0	2.4571E-07	5	15297	15253;15297;15345;15394;15445		170.55	119.7	1	31469000			57002	614	32602	32603	69921;69922;69923;69924;69925	69922		72			-0.053887354851212876
VYTVVDEMF	9	Oxidation (M)	_VYTVVDEM(Oxidation (M))F_		VYTVVDEM(1)F		VYTVVDEM(42)F	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.8351440429688	2	559.757358	1117.50016	0.15036	8.4165E-05	0.23944	0.00013403	0.3898	0.00021819	559.7576125317873	66.811	1.2309	66.797	66.278	67.509	-0.013596					61	43	2	0	0	0	0.14099	1	16732	16732		42.095	26.247	1	148460			57003	614	32602	32603	69926	69926		72			-0.053887354851212876
VYTVVDEMFL	10	Oxidation (M)	_VYTVVDEM(Oxidation (M))FL_		VYTVVDEM(1)FL		VYTVVDEM(230)FL	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.299560546875	2	616.29939	1230.58423	0.42514	0.00026201	-0.24298	-0.00014975	0.18215	0.00011226	616.2993214447447	74.939	1.909	74.939	74.343	76.252	0					230	68	5	0	0	0	1.1774999999999998E-28	3	19183	19183;19234;19284		232.51	154.36	1	12365000			57004	614	32603	32604	69927;69928;69929	69927		72			-0.021842043882088547
VYTVVDEMFL	10	Oxidation (M)	_VYTVVDEM(Oxidation (M))FL_		VYTVVDEM(1)FL		VYTVVDEM(230)FL	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.2994995117188	2	616.29939	1230.58423	0.17873	0.00011015	-0.064104	-3.9508E-05	0.11462	7.0643E-05	616.299427563095	74.921	1.7829	74.974	74.405	76.188	0.052361					237	64	5	0	0	0	1.1774999999999998E-28	3	19147	19147;19193;19238		232.51	154.36	1	12519000			57005	614	32603	32604	69930;69931;69932	69930		72			-0.021842043882088547
VYTVVDEMFL	10	Oxidation (M)	_VYTVVDEM(Oxidation (M))FL_		VYTVVDEM(1)FL		VYTVVDEM(230)FL	0	0	1		ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	ENSG00000042753|ENST00000263270|AP2S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.2997436523438	2	616.29939	1230.58423	0.49577	0.00030554	-0.29855	-0.00018399	0.19722	0.00012155	616.2992966431977	74.991	1.6622	74.959	74.5	76.163	-0.031487					200	60	5	0	0	0	1.1774999999999998E-28	3	19225	19174;19225;19274		232.51	150.62	1	13047000			57006	614	32603	32604	69933;69934;69935	69934		72			-0.021842043882088547
VYTVVLQGLA	10	Unmodified	_VYTVVLQGLA_					0	0	0			REV__ENST00000409074.6_2_14:104056781-104056841:+|nuORF	REV__ENST00000409074.6_2_14:104056781-104056841:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2315673828125	2	531.813325	1061.6121	0.58675	0.00031204	-0.2756	-0.00014657	0.31115	0.00016548	531.8132635373961	72.428	0.56601	72.428	72.184	72.75	0					36	20	2	0	0	0	0.255	1	18432	18432		34.402	3.7652	1	232510	+		57007	20753	32604	32605	69936	69936					0.08375486654176711
VYTVVLQGLA	10	Unmodified	_VYTVVLQGLA_					0	0	0			REV__ENST00000409074.6_2_14:104056781-104056841:+|nuORF	REV__ENST00000409074.6_2_14:104056781-104056841:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2315063476562	2	531.813325	1061.6121	0.59108	0.00031434	-0.44394	-0.00023609	0.14714	7.825E-05	531.8132053017035	72.48	0.48885	72.45	72.169	72.657	-0.029305					31	16	2	0	0	0	0.2266	1	18422	18422		41.84	3.8656	1	284110	+		57008	20753	32604	32605	69937	69937					0.08375486654176711
VYTVWHII	8	Unmodified	_VYTVWHII_					0	0	0			REV__ENSG00000115526|ENST00000264249|CHST10	REV__ENSG00000115526|ENST00000264249|CHST10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2634887695312	2	515.789653	1029.56475	0.38932	0.00020081	0.3503	0.00018068	0.73962	0.00038149	515.7897459656988	71.495	1.4576	71.495	71.209	72.667	0					92	52	2	0	0	0	0.33995	1	18475	18475		15.768	10.008	1	2538300	+		57009	14882	32605	32606	69938	69938					0.051152521738458745
VYTVWHII	8	Unmodified	_VYTVWHII_					0	0	0			REV__ENSG00000115526|ENST00000264249|CHST10	REV__ENSG00000115526|ENST00000264249|CHST10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2635498046875	2	515.789653	1029.56475	0.3142	0.00016206	0.47361	0.00024428	0.78781	0.00040634	515.789767071778	71.567	1.5582	71.539	71.262	72.82	-0.027275					107	55	3	0	0	0	0.33995	1	18467	18467		15.768	1.1865	1	3194100	+		57010	14882	32605	32606	69939	69939					0.051152521738458745
VYTYFAAGY	9	Unmodified	_VYTYFAAGY_					0	0	0			REV__ENSG00000279301|ENST00000641193|OR2T11	REV__ENSG00000279301|ENST00000641193|OR2T11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.355224609375	2	527.74765	1053.48075	0.45657	0.00024095	-1.3736	-0.00072492	-0.91704	-0.00048396	527.7470353586288	43.745	0.50646	43.823	43.541	44.048	0.077515					30	18	2	0	0	0	0.24739	1	9563	9563		8.5933	0	1	285800	+		57011	19355	32606	32607	69940	69940					-0.04385323713722755
VYTYIQSRF	9	Unmodified	_VYTYIQSRF_					0	0	0		nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4;ENSG00000010219|ENST00000543431|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4;nc|ENSG00000127334|Q92630-2|DYRK2;ENSG00000127334|ENST00000344096|DYRK2	nc|ENSG00000010219|Q9NR20-5|DYRK4;ENSG00000127334|ENST00000344096|DYRK2	ENSG00000127334|ENST00000344096|DYRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8063354492188	2	588.806031	1175.59751	0.65795	0.00038741	0.064027	3.7699E-05	0.72198	0.0004251	588.8060371970196	50.377	0.48711	50.377	50.108	50.595	0					46	17	3	0	0	0	0.00054549	1	11673	11673		128.57	86.733	1	1060600			57012	416;3314	32607	32608	69941	69941					0.016734145060127048
VYTYIQSRF	9	Unmodified	_VYTYIQSRF_					0	0	0		nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4;ENSG00000010219|ENST00000543431|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4;nc|ENSG00000127334|Q92630-2|DYRK2;ENSG00000127334|ENST00000344096|DYRK2	nc|ENSG00000010219|Q9NR20-5|DYRK4;ENSG00000127334|ENST00000344096|DYRK2	ENSG00000127334|ENST00000344096|DYRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.8067016601562	2	588.806031	1175.59751	0.95209	0.0005606	-0.27448	-0.00016161	0.67761	0.00039898	588.8058453617854	50.331	0.54638	50.376	50.108	50.654	0.044891					55	19	4	0	0	0	0.00054549	1	11654	11654		128.57	94.171	1	1292200			57013	416;3314	32607	32608	69942	69942					0.016734145060127048
VYTYIQSRF	9	Unmodified	_VYTYIQSRF_					0	0	0		nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4;ENSG00000010219|ENST00000543431|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4;nc|ENSG00000127334|Q92630-2|DYRK2;ENSG00000127334|ENST00000344096|DYRK2	nc|ENSG00000010219|Q9NR20-5|DYRK4;ENSG00000127334|ENST00000344096|DYRK2	ENSG00000127334|ENST00000344096|DYRK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.806396484375	2	588.806031	1175.59751	1.0301	0.0006065	-0.4692	-0.00027627	0.56085	0.00033023	588.8057283527351	50.402	0.53273	50.422	50.126	50.658	0.020695					51	19	3	0	0	0	0.0023309	2	11668	11668;11720		107.56	81.295	1	1139700			57014	416;3314	32607	32608	69943;69944	69943					0.016734145060127048
VYVAALKTL	9	Unmodified	_VYVAALKTL_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.278076171875	2	489.305136	976.595718	0.28399	0.00013896	3.0835	0.0015087	3.3674	0.0016477	489.3049444277725	52.237	0.44019	52.237	51.914	52.354	0					39	15	4	0	0	0	0.14961	1	12222	12222		41.84	24.753	1	312430			57015	1445	32608	32609	69945	69945					0.10648405488097978
VYVAAVREF	9	Unmodified	_VYVAAVREF_					0	0	0		ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75;WDR75|p.K411Mfs*20|1|0.05|ENSG00000115368|chr2:189465196-189465197|-/TGATAATTAACTACATCCAAGACAACTTCTGT|frameshift_variant	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	ENST00000436347.5_1_2:190313199-190340140:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.2589111328125	2	527.290017	1052.56548	0.58091	0.00030631	0.32234	0.00016997	0.90325	0.00047627	527.2901769786	55.417	0.69733	55.398	55.052	55.75	-0.019077					38	25	2	0	0	0	0.24688	1	13222	13222		14.838	4.7643	1	376620			57016	2640	32609	32610	69946	69946					0.04130046822888289
VYVAEQPIF	9	Unmodified	_VYVAEQPIF_					0	0	0			REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3082885742188	2	533.2844	1064.55425	0.49742	0.00026527	-2.55	-0.0013599	-2.0526	-0.0010946	533.283278962687	62.365	0.47477	62.357	62.04	62.514	-0.0085526					27	17	2	0	0	0	0.21137	1	15329	15329		18.135	13.379	1	147370	+		57017	22888	32610	32611	69947	69947					0.024552247287601858
VYVAIQAVL	9	Unmodified	_VYVAIQAVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7908020019531	2	488.29731	974.580068	0.0090348	4.4117E-06	-0.2741	-0.00013384	-0.26507	-0.00012943	488.2969184954192	75.891	0.45953	75.891	75.682	76.141	0					40	16	3	0	0	0	0.11486	1	19481	19481		39.957	14.558	1	975370			57018	4111	32611	32612	69948	69948					0.0917611897103825
VYVATRPTI	9	Unmodified	_VYVATRPTI_					0	0	0		ENSG00000166002|ENST00000298966|SMCO4	ENSG00000166002|ENST00000298966|SMCO4	ENSG00000166002|ENST00000298966|SMCO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.29766845703125	2	510.297842	1018.58113	0.43938	0.00022422	-0.37942	-0.00019362	0.059959	3.0597E-05	510.2975432246599	40.654	0.54425	40.654	40.416	40.96	0					44	19	3	0	0	0	0.067763	1	8702	8702		59.368	23.241	1	740460			57019	6019	32612	32613	69949	69949					0.07258333339962064
VYVATRPTI	9	Unmodified	_VYVATRPTI_					0	0	0		ENSG00000166002|ENST00000298966|SMCO4	ENSG00000166002|ENST00000298966|SMCO4	ENSG00000166002|ENST00000298966|SMCO4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.29766845703125	2	510.297842	1018.58113	0.44538	0.00022727	-0.55167	-0.00028152	-0.10629	-5.4241E-05	510.2974741369812	40.53	0.58649	40.623	40.343	40.929	0.09267					48	21	3	0	0	0	0.013404	1	8643	8643		74.2	38.073	1	777190			57020	6019	32612	32613	69950	69950					0.07258333339962064
VYVATRPTI	9	Unmodified	_VYVATRPTI_					0	0	0		ENSG00000166002|ENST00000298966|SMCO4	ENSG00000166002|ENST00000298966|SMCO4	ENSG00000166002|ENST00000298966|SMCO4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2978515625	2	510.297842	1018.58113	0.35198	0.00017962	-0.2462	-0.00012563	0.10578	5.3981E-05	510.29766461871105	40.493	0.49528	40.593	40.34	40.835	0.099403					44	17	3	0	0	0	0.017549	1	8636	8636		67.838	23.98	1	893210			57021	6019	32612	32613	69951	69951					0.07258333339962064
VYVDAVGQF	9	Unmodified	_VYVDAVGQF_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;nc|ENSG00000116198|O60308-2|CEP104;nc|ENSG00000116198|O60308-3|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.25299072265625	2	499.2531	996.491647	0.22208	0.00011088	0.017045	8.5098E-06	0.23913	0.00011939	499.25289277269377	61.608	0.85544	61.608	61.307	62.162	0					92	31	4	0	0	0	0.0028626	1	15144	15144		103.35	67.226	1	1928900			57022	2712	32613	32614	69952	69952					-0.006739213394212129
VYVDAVGQF	9	Unmodified	_VYVDAVGQF_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;nc|ENSG00000116198|O60308-2|CEP104;nc|ENSG00000116198|O60308-3|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2529296875	2	499.2531	996.491647	-0.0049392	-2.4659E-06	0.30261	0.00015108	0.29767	0.00014861	499.2529598099489	61.514	1.1715	61.611	61.325	62.497	0.096985					96	42	4	0	0	0	0.0016361	2	15108	15108;15161		114.65	76.675	1	1724900			57023	2712	32613	32614	69953;69954	69953					-0.006739213394212129
VYVDAVGQF	9	Unmodified	_VYVDAVGQF_					0	0	0		ENSG00000116198|ENST00000378230|CEP104;nc|ENSG00000116198|O60308-2|CEP104;nc|ENSG00000116198|O60308-3|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF	ENSG00000116198|ENST00000378230|CEP104	ENSG00000116198|ENST00000378230|CEP104	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2530212402344	2	499.2531	996.491647	0.024402	1.2183E-05	0.073989	3.6939E-05	0.098391	4.9122E-05	499.2529701826343	61.553	0.79683	61.544	61.296	62.093	-0.0094566					87	28	4	0	0	0	0.0042138	2	15124	15124;15170		92.653	58.551	1	1673600			57024	2712	32613	32614	69955;69956	69955					-0.006739213394212129
VYVDDIYVI	9	Unmodified	_VYVDDIYVI_					0	0	0		ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF	ENSG00000137812|ENST00000399668|KNL1	ENSG00000137812|ENST00000399668|KNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7593994140625	2	549.789515	1097.56448	0.83442	0.00045876	-0.85995	-0.00047279	-0.025527	-1.4035E-05	549.7894370308433	78.132	0.50742	78.132	77.955	78.462	0					25	18	2	0	0	0	0.18943	1	20263	20263		23.148	9.6405	1	208710			57025	4078	32614	32615	69957	69957					0.01959787663327006
VYVDDIYVI	9	Unmodified	_VYVDDIYVI_					0	0	0		ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF	ENSG00000137812|ENST00000399668|KNL1	ENSG00000137812|ENST00000399668|KNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7595825195312	2	549.789515	1097.56448	0.78549	0.00043185	-0.47619	-0.00026181	0.30929	0.00017005	549.7898529466644	78.157	0.43492	78.215	77.979	78.414	0.058151					27	15	2	0	0	0	0.18943	1	20185	20185		30.225	17.693	1	208940			57026	4078	32614	32615	69958	69958					0.01959787663327006
VYVDGLKSL	9	Unmodified	_VYVDGLKSL_					0	0	0			REV__nc|ENSG00000102144|P00558-2|PGK1	REV__nc|ENSG00000102144|P00558-2|PGK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.79608154296875	2	497.2844	992.554247	0.37776	0.00018785	0.1122	5.5793E-05	0.48995	0.00024365	497.2844018985804	43.155	0.51086	43.155	42.93	43.441	0					52	18	4	0	0	0	0.21447	1	9521	9521		21.537	0	1	1130100	+		57027	14307	32615	32616	69959	69959					0.05767224728754172
VYVDLGGSHVF	11	Unmodified	_VYVDLGGSHVF_					0	0	0		BMS1|p.K484Ifs*79|1|0.03|ENSG00000165733|chr10:42796694-42796695|-/TT|frameshift_variant;BMS1|p.F897Lfs*30|1|0.22|ENSG00000165733|chr10:42820344-42820344|T/-|frameshift_variant;ENSG00000165733|ENST00000374518|BMS1	BMS1|p.K484Ifs*79|1|0.03|ENSG00000165733|chr10:42796694-42796695|-/TT|frameshift_variant	BMS1|p.K484Ifs*79|1|0.03|ENSG00000165733|chr10:42796694-42796695|-/TT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.8037719726562	2	596.803488	1191.59242	0.82078	0.00048985	-0.29488	-0.00017599	0.5259	0.00031386	596.8032758304031	60.809	1.1569	60.809	60.495	61.652	0					93	42	5	0	0	0	3.6021E-34	4	14896	14852;14896;14942;14990		231.73	193.55	1	5862300			57028	78	32616	32617	69960;69961;69962;69963	69961					0.004291106434266112
VYVDLGGSHVF	11	Unmodified	_VYVDLGGSHVF_					0	0	0		BMS1|p.K484Ifs*79|1|0.03|ENSG00000165733|chr10:42796694-42796695|-/TT|frameshift_variant;BMS1|p.F897Lfs*30|1|0.22|ENSG00000165733|chr10:42820344-42820344|T/-|frameshift_variant;ENSG00000165733|ENST00000374518|BMS1	BMS1|p.K484Ifs*79|1|0.03|ENSG00000165733|chr10:42796694-42796695|-/TT|frameshift_variant	BMS1|p.K484Ifs*79|1|0.03|ENSG00000165733|chr10:42796694-42796695|-/TT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.8036499023438	2	596.803488	1191.59242	0.82349	0.00049146	-0.28135	-0.00016791	0.54214	0.00032355	596.803270023109	60.659	0.77019	60.756	60.503	61.273	0.096985					74	27	4	0	0	0	3.6021E-34	4	14868	14817;14868;14920;14972		231.73	193.55	1	5609900			57029	78	32616	32617	69964;69965;69966;69967	69965					0.004291106434266112
VYVDLGGSHVF	11	Unmodified	_VYVDLGGSHVF_					0	0	0		BMS1|p.K484Ifs*79|1|0.03|ENSG00000165733|chr10:42796694-42796695|-/TT|frameshift_variant;BMS1|p.F897Lfs*30|1|0.22|ENSG00000165733|chr10:42820344-42820344|T/-|frameshift_variant;ENSG00000165733|ENST00000374518|BMS1	BMS1|p.K484Ifs*79|1|0.03|ENSG00000165733|chr10:42796694-42796695|-/TT|frameshift_variant	BMS1|p.K484Ifs*79|1|0.03|ENSG00000165733|chr10:42796694-42796695|-/TT|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.8037719726562	2	596.803488	1191.59242	0.77547	0.0004628	-0.060681	-3.6215E-05	0.71478	0.00042659	596.8033555737946	60.762	0.61648	60.753	60.516	61.133	-0.0094566					69	22	4	0	0	0	3.6021E-34	4	14881	14834;14881;14933;14984		231.73	186.03	1	5412300			57030	78	32616	32617	69968;69969;69970;69971	69969					0.004291106434266112
VYVELSHIK	9	Unmodified	_VYVELSHIK_					0	0	0		nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP	nc|ENSG00000100106|Q9H2D6-2|TRIOBP	nc|ENSG00000100106|Q9H2D6-2|TRIOBP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2952270507812	2	544.310949	1086.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.107	1	35.182	34.682	35.682	0.075306								0	0	0	0.2362	1	6995	6995		10.824	0	1				57031	1534	32617	32618	69972	69972					0.06750602511419856
VYVERAEVL	9	Unmodified	_VYVERAEVL_					0	0	0		ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.3009033203125	2	539.300581	1076.58661	0.42528	0.00022935	0.047349	2.5535E-05	0.47263	0.00025489	539.3004839835324	43.836	0.63106	43.836	43.545	44.176	0					75	22	4	0	0	0	0.22695	1	9711	9711		24.882	13.387	1	2937900			57032	1354	32618	32619	69973	69973					0.05138012131760661
VYVERAEVL	9	Unmodified	_VYVERAEVL_					0	0	0		ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.30078125	2	539.300581	1076.58661	0.48853	0.00026347	-0.11067	-5.9682E-05	0.37787	0.00020378	539.3005745981486	43.644	0.70111	43.721	43.373	44.074	0.077515					84	25	5	0	0	0	0.003673	1	9614	9614		96.936	53.163	1	3027800			57033	1354	32618	32619	69974	69974					0.05138012131760661
VYVERAEVL	9	Unmodified	_VYVERAEVL_					0	0	0		ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.3009033203125	2	539.300581	1076.58661	0.6039	0.00032568	-0.47902	-0.00025834	0.12488	6.7346E-05	539.3004523854129	43.633	0.69337	43.717	43.41	44.103	0.083992					89	22	5	0	0	0	0.0023895	2	9587	9587;9637		107.1	55.47	1	3185500			57034	1354	32618	32619	69975;69976	69975					0.05138012131760661
VYVGTAVNL	9	Unmodified	_VYVGTAVNL_					0	0	0		ENSG00000108510|ENST00000397786|MED13;MED13|p.N1136Tfs*11|1|0.24|ENSG00000108510|chr17:61982596-61982596|T/-|frameshift_variant	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.26336669921875	2	468.263468	934.512382	0.14051	6.5798E-05	-0.21414	-0.00010027	-0.073628	-3.4477E-05	468.2632688447409	58.355	0.57906	58.355	58.075	58.654	0					33	19	2	0	0	0	0.027237	1	14179	14179		61.357	16.95	1	393170			57035	2190	32619	32620	69977	69977					0.04250669040231969
VYVGTAVNL	9	Unmodified	_VYVGTAVNL_					0	0	0		ENSG00000108510|ENST00000397786|MED13;MED13|p.N1136Tfs*11|1|0.24|ENSG00000108510|chr17:61982596-61982596|T/-|frameshift_variant	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2634582519531	2	468.263468	934.512382	0.12051	5.643E-05	0.028969	1.3565E-05	0.14948	6.9995E-05	468.2633642926506	58.27	0.49406	58.356	58.112	58.606	0.085621					32	17	2	0	0	0	0.037153	1	14125	14125		74.423	19.649	1	421140			57036	2190	32619	32620	69978	69978					0.04250669040231969
VYVGTAVNL	9	Unmodified	_VYVGTAVNL_					0	0	0		ENSG00000108510|ENST00000397786|MED13;MED13|p.N1136Tfs*11|1|0.24|ENSG00000108510|chr17:61982596-61982596|T/-|frameshift_variant	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	468.263916015625	2	468.263468	934.512382	0.58354	0.00027325	-0.37701	-0.00017654	0.20653	9.6713E-05	468.2633901959965	58.352	0.91399	58.338	58.063	58.977	-0.014267					45	32	3	0	0	0	0.0083926	1	14152	14152		81.89	17.654	1	357220			57037	2190	32619	32620	69979	69979					0.04250669040231969
VYVHLRLS	8	Unmodified	_VYVHLRLS_					0	0	0		ENST00000262947.7_1_19:4668610-4668646:-|nuORF	ENST00000262947.7_1_19:4668610-4668646:-|nuORF	ENST00000262947.7_1_19:4668610-4668646:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.781494140625	2	493.792727	985.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.523	1	77.579	77.079	78.079	0.055412								0	0	0	0.35985	1	20005	20005		10.183	0.83596	1				57038	8992	32620	32621	69980	69980					0.07753770405372507
VYVKHSISF	9	Unmodified	_VYVKHSISF_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8001708984375	2	540.297842	1078.58113	0.63047	0.00034064	1.4372	0.00077651	2.0677	0.0011171	540.2984040132363	36.168	0.9112	36.251	35.98	36.891	0.082355					60	32	3	0	0	0	0.00078391	3	7308	7306;7308;7350		125.53	62.956	1	1359000			57039	7495	32621	32622	69981;69982;69983	69982					0.04498333339938654
VYVKHSISF	9	Unmodified	_VYVKHSISF_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2986450195312	2	540.297842	1078.58113	0.84713	0.0004577	1.3332	0.00072031	2.1803	0.001178	540.2984198021561	36.178	1.0197	36.264	35.898	36.918	0.08625					71	36	3	0	0	0	0.00045155	2	7298	7298;7347		129.77	71.094	1	1263900			57040	7495	32621	32622	69984;69985	69984					0.04498333339938654
VYVKHSISF	9	Unmodified	_VYVKHSISF_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	540.297842	1078.58113	0.58116	0.000314	1.5633	0.00084467	2.1445	0.0011587	540.2984890707058	36.316	1.0023	36.316	36.037	37.039	0	0.039098	0.00012695	NaN	129.77	72	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1202600			57041	7495	32621	32622							0.04498333339938654
VYVKVTSI	8	Unmodified	_VYVKVTSI_					0	0	0		ENSG00000261701|ENST00000540303|HPR;nc|ENSG00000261701|P00739-2|HPR;nc|ENSG00000257017|P00738-2|HP;ENSG00000257017|ENST00000355906|HP	ENSG00000261701|ENST00000540303|HPR	ENSG00000261701|ENST00000540303|HPR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.58306884765625	2	454.776211	907.537869	0.13012	5.9177E-05	-0.10188	-4.6333E-05	0.028242	1.2844E-05	454.7761861767238	43.018	0.59913	43.018	42.734	43.333	0					45	21	3	0	0	0	0.27047	1	9421	9421		45.7	21.679	1	687970			57042	8662	32622	32623	69986	69986					0.0804014356266407
VYVKVTSI	8	Unmodified	_VYVKVTSI_					0	0	0		ENSG00000261701|ENST00000540303|HPR;nc|ENSG00000261701|P00739-2|HPR;nc|ENSG00000257017|P00738-2|HP;ENSG00000257017|ENST00000355906|HP	ENSG00000261701|ENST00000540303|HPR	ENSG00000261701|ENST00000540303|HPR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.58294677734375	2	454.776211	907.537869	0.12673	5.7635E-05	0.065997	3.0014E-05	0.19273	8.7649E-05	454.7761867921969	42.834	0.56676	42.919	42.704	43.271	0.085197					46	20	3	0	0	0	0.27906	1	9322	9322		41.84	7.4379	1	615200			57043	8662	32622	32623	69987	69987					0.0804014356266407
VYVKVTSI	8	Unmodified	_VYVKVTSI_					0	0	0		ENSG00000261701|ENST00000540303|HPR;nc|ENSG00000261701|P00739-2|HPR;nc|ENSG00000257017|P00738-2|HP;ENSG00000257017|ENST00000355906|HP	ENSG00000261701|ENST00000540303|HPR	ENSG00000261701|ENST00000540303|HPR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.58294677734375	2	454.776211	907.537869	-0.073276	-3.3324E-05	0.20324	9.2428E-05	0.12996	5.9104E-05	454.77622901313475	42.805	0.49031	42.896	42.633	43.123	0.091362					44	17	3	0	0	0	0.29969	1	9291	9291		34.402	6.7729	1	694950			57044	8662	32622	32623	69988	69988					0.0804014356266407
VYVLSLESGF	10	Unmodified	_VYVLSLESGF_					0	0	0			REV__nc|ENSG00000114650|Q12770-3|SCAP	REV__nc|ENSG00000114650|Q12770-3|SCAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7592163085938	2	557.294965	1112.57538	0.29385	0.00016376	1.236	0.00068884	1.5299	0.0008526	557.295448688269	80.344	2.3091	80.344	79.411	81.72	0					118	96	2	0	0	0	0.31482	1	20712	20712		11.64	3.047	1	334070	+		57045	14841	32623	32624	69989	69989					0.02359190037600456
VYVLTNLAYF	10	Unmodified	_VYVLTNLAYF_					0	0	0		ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.826416015625	2	601.826432	1201.63831	0.62282	0.00037483	0.031535	1.8979E-05	0.65435	0.00039381	601.8262990972247	88.477	0.68463	88.477	88.22	88.904	0					90	34	3	0	0	0	0.00094584	3	23386	23345;23386;23437		121.53	99.787	1	408680			57046	1824	32624	32625	69990;69991;69992	69991					0.04555755825640517
VYVLTNLAYF	10	Unmodified	_VYVLTNLAYF_					0	0	0		ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.8269653320312	2	601.826432	1201.63831	0.57816	0.00034795	0.16522	9.9437E-05	0.74338	0.00044739	601.8263344766417	88.36	0.70329	88.449	88.19	88.894	0.089203					73	30	3	0	0	0	0.0003305	2	23316	23316;23363		129.77	99.069	1	579720			57047	1824	32624	32625	69993;69994	69993					0.04555755825640517
VYVLTNLAYF	10	Unmodified	_VYVLTNLAYF_					0	0	0		ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.82666015625	2	601.826432	1201.63831	0.43871	0.00026402	0.13836	8.327E-05	0.57707	0.00034729	601.8264235990621	88.453	0.66162	88.45	88.243	88.905	-0.0028381					75	28	3	0	0	0	0.0023784	2	23346	23346;23395		106.94	85.403	1	599160			57048	1824	32624	32625	69995;69996	69995					0.04555755825640517
VYVLTVTEL	9	Unmodified	_VYVLTVTEL_					0	0	0		ENSG00000196368|ENST00000375992|NUDT11;ENSG00000122824|ENST00000356450|NUDT10	ENSG00000196368|ENST00000375992|NUDT11	ENSG00000196368|ENST00000375992|NUDT11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.800048828125	2	518.799883	1035.58521	0.51858	0.00026904	-0.1534	-7.9583E-05	0.36518	0.00018946	518.7997955290108	75.111	0.71166	75.111	74.765	75.477	0					67	22	4	0	0	0	0.037153	1	19302	19302		64.236	0	1	937470			57049	3072	32625	32626	69997	69997					0.06884378042991557
VYVLTVTEL	9	Unmodified	_VYVLTVTEL_					0	0	0		ENSG00000196368|ENST00000375992|NUDT11;ENSG00000122824|ENST00000356450|NUDT10	ENSG00000196368|ENST00000375992|NUDT11	ENSG00000196368|ENST00000375992|NUDT11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7999877929688	2	518.799883	1035.58521	0.368	0.00019092	0.075314	3.9073E-05	0.44331	0.00022999	518.7998225214236	75.076	0.67036	75.128	74.865	75.536	0.052368					59	24	3	0	0	0	0.0050635	1	19264	19264		100.37	0	1	1144300			57050	3072	32625	32626	69998	69998					0.06884378042991557
VYVLTVTEL	9	Unmodified	_VYVLTVTEL_					0	0	0		ENSG00000196368|ENST00000375992|NUDT11;ENSG00000122824|ENST00000356450|NUDT10	ENSG00000196368|ENST00000375992|NUDT11	ENSG00000196368|ENST00000375992|NUDT11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7999877929688	2	518.799883	1035.58521	0.57886	0.00030031	-0.09296	-4.8227E-05	0.4859	0.00025209	518.7997244228824	75.145	0.69044	75.114	74.868	75.558	-0.031487					57	25	3	0	0	0	0.0050635	1	19286	19286		100.37	0	1	870130			57051	3072	32625	32626	69999	69999					0.06884378042991557
VYVPILPASL	10	Unmodified	_VYVPILPASL_					0	0	0		DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant;ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-3|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B;nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant;nc|ENSG00000184014|Q6IQ26-2|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.3259887695312	2	536.326068	1070.63758	0.68321	0.00036642	-0.1663	-8.919E-05	0.51691	0.00027723	536.3257025770025	85.669	0.59595	85.669	85.504	86.1	0					47	21	3	0	0	0	0.010932	2	22512	22512;22588		81.613	59.866	1	388720			57052	262;7425	32626	32627	70000;70001	70000					0.10508961176606135
VYVPILPASL	10	Unmodified	_VYVPILPASL_					0	0	0		DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant;ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-3|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B;nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant;nc|ENSG00000184014|Q6IQ26-2|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.326171875	2	536.326068	1070.63758	0.50623	0.0002715	-0.068074	-3.651E-05	0.43816	0.00023499	536.325811557512	85.606	0.64732	85.691	85.462	86.109	0.084251					53	23	3	0	0	0	0.017528	1	22482	22482		74.423	60.517	1	546620			57053	262;7425	32626	32627	70002	70002					0.10508961176606135
VYVPILPASL	10	Unmodified	_VYVPILPASL_					0	0	0		DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant;ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-3|DENND5B;nc|ENSG00000170456|Q6ZUT9-4|DENND5B;nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	DENND5B|p.L1254Cfs*9|1|0.33|ENSG00000170456|chr12:31387669-31387669|A/-|frameshift_variant;nc|ENSG00000184014|Q6IQ26-2|DENND5A	nc|ENSG00000184014|Q6IQ26-2|DENND5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.3258666992188	2	536.326068	1070.63758	0.67698	0.00036308	-0.2107	-0.00011301	0.46628	0.00025008	536.3257374261209	85.65	0.75603	85.641	85.455	86.211	-0.0090103					56	27	3	0	0	0	0.010932	2	22489	22489;22541		81.613	65.766	1	400080			57054	262;7425	32626	32627	70003;70004	70003					0.10508961176606135
VYVQELQKL	9	Unmodified	_VYVQELQKL_					0	0	0		EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant;EEA1|p.N1334Tfs*12|1|0.34|ENSG00000102189|chr12:92777556-92777556|T/-|frameshift_variant;ENSG00000102189|ENST00000322349|EEA1	EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant	EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3240356445312	2	560.324057	1118.63356	0.70338	0.00039412	-0.63237	-0.00035433	0.071015	3.9791E-05	560.323722085041	50.54	0.73895	50.54	50.267	51.006	0					64	26	3	0	0	0	1.6536E-07	1	11723	11723		173.69	97.926	1	1409200			57055	279	32627	32628	70005	70005					0.07898871682891695
VYVQELQKL	9	Unmodified	_VYVQELQKL_					0	0	0		EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant;EEA1|p.N1334Tfs*12|1|0.34|ENSG00000102189|chr12:92777556-92777556|T/-|frameshift_variant;ENSG00000102189|ENST00000322349|EEA1	EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant	EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3243408203125	2	560.324057	1118.63356	0.94731	0.0005308	-0.85801	-0.00048076	0.089301	5.0038E-05	560.3236074703048	50.506	0.74455	50.551	50.318	51.063	0.044891					65	26	4	0	0	0	4.8913E-11	1	11706	11706		187.3	97.896	1	1404400			57056	279	32627	32628	70006	70006					0.07898871682891695
VYVQELQKL	9	Unmodified	_VYVQELQKL_					0	0	0		EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant;EEA1|p.N1334Tfs*12|1|0.34|ENSG00000102189|chr12:92777556-92777556|T/-|frameshift_variant;ENSG00000102189|ENST00000322349|EEA1	EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant	EEA1|p.A695Efs*27|1|0.2|ENSG00000102189|chr12:92811394-92811394|G/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	560.324057	1118.63356	0.86106	0.00048247	-0.8071	-0.00045224	0.053961	3.0236E-05	560.3236025007857	50.584	0.71775	50.605	50.309	51.027	0.020691	0.039519	-4.2304E-05	NaN	187.3	77	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1487700			57057	279	32627	32628							0.07898871682891695
VYVQHPITF	9	Unmodified	_VYVQHPITF_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2980346679688	2	552.297842	1102.58113	0.37579	0.00020755	-0.013227	-7.3055E-06	0.36257	0.00020024	552.2978177647573	49.952	1.1923	49.952	49.6	50.792	0					144	43	5	0	0	0	1.5552E-11	5	11552	11508;11552;11604;11653;11704		198.25	101.97	1	14167000			57058	7799	32628	32629	70007;70008;70009;70010;70011	70008					0.033943333399292897
VYVQHPITF	9	Unmodified	_VYVQHPITF_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.279541015625	2	552.297842	1102.58113	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.565	1	53.565	53.065	54.065	0								0	0	0	0.21009	1	12659	12659		19.257	2.3147	1				57059	7799	32628	32629	70012	70012					0.033943333399292897
VYVQHPITF	9	Unmodified	_VYVQHPITF_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2977294921875	2	552.297842	1102.58113	0.60909	0.0003364	-0.25398	-0.00014027	0.35511	0.00019613	552.2977067271445	49.918	1.2255	49.963	49.621	50.846	0.044891					138	45	5	0	0	0	4.1361E-11	4	11487	11487;11533;11579;11630		189.78	89.977	1	14324000			57060	7799	32628	32629	70013;70014;70015;70016	70013					0.033943333399292897
VYVQHPITF	9	Unmodified	_VYVQHPITF_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2981567382812	2	552.297842	1102.58113	0.58356	0.0003223	-0.15405	-8.508E-05	0.42951	0.00023722	552.2977402833013	49.961	1.2292	49.982	49.617	50.846	0.020691					138	45	4	0	0	0	6.1879E-11	5	11534	11481;11534;11584;11632;11683		183.04	86.754	1	13148000			57061	7799	32628	32629	70017;70018;70019;70020;70021	70018					0.033943333399292897
VYVQILQKL	9	Unmodified	_VYVQILQKL_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2981567382812	2	552.344792	1102.67503	0.44281	0.00024458	-0.22857	-0.00012625	0.21424	0.00011833	552.3446364459286	62.49	0.42297	62.49	62.266	62.689	0					28	15	2	0	0	0	0.09064	1	15436	15436		56.177	20.05	1	308360			57062	1267	32629	32630	70022	70022					0.127800524422355
VYVQILQKL	9	Unmodified	_VYVQILQKL_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2981567382812	2	552.344792	1102.67503	0.47455	0.00026211	-0.26139	-0.00014438	0.21315	0.00011773	552.3447237967622	62.396	0.38614	62.493	62.279	62.665	0.096985					28	13	3	0	0	0	0.11397	1	15403	15403		49.933	31.787	1	261620			57063	1267	32629	32630	70023	70023					0.127800524422355
VYVQILQKL	9	Unmodified	_VYVQILQKL_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2981567382812	2	552.344792	1102.67503	0.41458	0.00022899	-0.18835	-0.00010404	0.22623	0.00012496	552.3446414685701	62.452	0.48415	62.443	62.191	62.675	-0.0085526					29	17	2	0	0	0	0.09064	1	15409	15409		56.177	27.095	1	233850			57064	1267	32629	32630	70024	70024					0.127800524422355
VYVQNVVKL	9	Unmodified	_VYVQNVVKL_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3214721679688	2	531.321317	1060.62808	0.56973	0.00030271	-0.39563	-0.0002102	0.1741	9.2505E-05	531.3211615650847	51.515	1.762	51.515	51.198	52.96	0					173	64	5	0	0	0	0.00012782	6	11998	11998;12048;12090;12139;12149;12208		136.33	82.929	1	21327000			57065	802	32630	32631	70025;70026;70027;70028;70029;70030	70025					0.10019192891104467
VYVQNVVKL	9	Unmodified	_VYVQNVVKL_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.321533203125	2	531.321317	1060.62808	0.3727	0.00019802	-0.2391	-0.00012704	0.1336	7.0982E-05	531.3212636925433	51.495	1.7112	51.541	51.245	52.956	0.046574					167	62	5	0	0	0	0.00012782	5	11992	11992;12042;12093;12121;12147		136.33	90.634	1	23068000			57066	802	32630	32631	70031;70032;70033;70034;70035	70031					0.10019192891104467
VYVQNVVKL	9	Unmodified	_VYVQNVVKL_					0	0	0		nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617|AP3D1	nc|ENSG00000065000|O14617|AP3D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3215942382812	2	531.321317	1060.62808	0.4496	0.00023888	-0.15505	-8.2379E-05	0.29455	0.0001565	531.3212195185322	51.612	1.8028	51.621	51.272	53.075	0.0095673					178	66	5	0	0	0	0.00012782	4	12051	12002;12051;12101;12168		136.33	90.634	1	21513000			57067	802	32630	32631	70036;70037;70038;70039	70037					0.10019192891104467
VYVSDIQEL	9	Unmodified	_VYVSDIQEL_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.30859375	2	533.276772	1064.53899	-0.043612	-2.3258E-05	1.9409	0.001035	1.8973	0.0010118	533.2771480110854	61.618	0.33539	61.715	61.455	61.79	0.096985					15	11	2	0	0	0	0.22701	1	15160	15160		18.373	3.5348	1	213710			57068	3613	32631	32632	70040	70040					0.009303131409069465
VYVSLLSVL	9	Unmodified	_VYVSLLSVL_					0	0	0			REV__ENSG00000140749|ENST00000268389|IGSF6	REV__ENSG00000140749|ENST00000268389|IGSF6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.3042297363281	2	496.804968	991.595384	0.49404	0.00024544	1.1026	0.00054776	1.5966	0.0007932	496.8055390225031	72.844	0.49454	72.844	72.696	73.191	0					25	17	2	0	0	0	0.25811	1	18633	18633		5.2307	0	1	180830	+		57069	16049	32632	32633	70041	70041					0.09924985768248007
VYVSRPSHF	9	Unmodified	_VYVSRPSHF_					0	0	0		ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2	ENST00000556539.5_1_12:56737175-56743495:-|nuORF	ENST00000556539.5_1_12:56737175-56743495:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2853393554688	2	546.285266	1090.55598	0.39897	0.00021795	-0.0097925	-5.3495E-06	0.38918	0.0002126	546.2851768602136	30.852	1.1359	30.852	30.391	31.526	0					127	40	5	0	0	0	0.00078391	3	5650	5650;5696;5743		125.53	81.671	1	1524300			57070	6466	32633	32634	70042;70043;70044	70042					0.0143227853739063
VYVSRPSHF	9	Unmodified	_VYVSRPSHF_					0	0	0		ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2	ENST00000556539.5_1_12:56737175-56743495:-|nuORF	ENST00000556539.5_1_12:56737175-56743495:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.2854614257812	2	546.285266	1090.55598	0.46135	0.00025203	-0.24876	-0.00013589	0.21259	0.00011613	546.2850826840837	30.842	0.94822	30.87	30.409	31.358	0.027946					105	33	5	0	0	0	0.00010125	3	5700	5654;5700;5752		140.63	96.775	1	1568000			57071	6466	32633	32634	70045;70046;70047	70046					0.0143227853739063
VYVSRPSHF	9	Unmodified	_VYVSRPSHF_					0	0	0		ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2	ENST00000556539.5_1_12:56737175-56743495:-|nuORF	ENST00000556539.5_1_12:56737175-56743495:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.285400390625	2	546.285266	1090.55598	0.40139	0.00021927	-0.059138	-3.2306E-05	0.34225	0.00018697	546.2851340073732	30.804	0.92575	30.831	30.394	31.32	0.027157					102	33	5	0	0	0	0.00078391	2	5697	5648;5697		125.53	73.261	1	1718900			57072	6466	32633	32634	70048;70049	70049					0.0143227853739063
VYVTAESRF	9	Unmodified	_VYVTAESRF_					0	0	0		nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2;ENST00000509520.5_1_1:179086401-179112191:-|nuORF;ENST00000504324.1_1_1:179086401-179112191:-|nuORF;nc|ENSG00000143322|P42684-8|ABL2	nc|ENSG00000143322|P42684-4|ABL2	nc|ENSG00000143322|P42684-4|ABL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2777099609375	2	536.277106	1070.53966	0.41403	0.00022204	0.78415	0.00042052	1.1982	0.00064256	536.2775612070641	40.87	0.51792	40.87	40.634	41.152	0					48	18	3	0	0	0	0.011693	1	8761	8761		76.825	34.985	1	562510			57073	4500	32634	32635	70050	70050					0.007211525806042118
VYVTAESRF	9	Unmodified	_VYVTAESRF_					0	0	0		nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2;ENST00000509520.5_1_1:179086401-179112191:-|nuORF;ENST00000504324.1_1_1:179086401-179112191:-|nuORF;nc|ENSG00000143322|P42684-8|ABL2	nc|ENSG00000143322|P42684-4|ABL2	nc|ENSG00000143322|P42684-4|ABL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.2774658203125	2	536.277106	1070.53966	0.51919	0.00027843	0.6494	0.00034826	1.1686	0.00062669	536.2774944106069	40.528	0.4556	40.621	40.474	40.929	0.09267					40	16	3	0	0	0	0.0054984	3	8681	8659;8681;8708		86.332	48.358	1	581830			57074	4500	32634	32635	70051;70052;70053	70052					0.007211525806042118
VYVTERII	8	Unmodified	_VYVTERII_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7741394042969	2	496.792392	991.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.962	1	63.962	63.462	64.462	0								0	0	0	0.33941	1	15872	15872		19.439	1.304	1				57075	1129;12595	32635	32636	70054	70054					0.07410930965670559
VYVTIDENNIL	11	Unmodified	_VYVTIDENNIL_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.84033203125	2	646.840268	1291.66598	0.50784	0.00032849	-0.2618	-0.00016934	0.24604	0.00015915	646.840009153967	73.042	0.66676	73.042	72.75	73.417	0					55	23	3	0	0	0	0.0042142	1	18622	18622		81.915	48.47	1	507130			57076	1819	32636	32637	70055	70055					0.031816142952493465
VYVTIDENNIL	11	Unmodified	_VYVTIDENNIL_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.83984375	2	646.840268	1291.66598	0.34127	0.00022075	-0.01211	-7.8331E-06	0.32916	0.00021291	646.8401168270007	72.959	0.76057	73.012	72.765	73.525	0.053841					62	27	3	0	0	0	0.0011409	1	18598	18598		94.909	61.464	1	386350			57077	1819	32636	32637	70056	70056					0.031816142952493465
VYVTIDENNIL	11	Unmodified	_VYVTIDENNIL_					0	0	0		nc|ENSG00000103222|P33527-2|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	nc|ENSG00000103222|P33527-2|ABCC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	646.84033203125	2	646.840268	1291.66598	0.47757	0.00030891	-0.18394	-0.00011898	0.29363	0.00018993	646.8400662090626	73.018	0.79186	72.989	72.738	73.529	-0.029305					58	28	3	0	0	0	0.0013351	1	18625	18625		92.201	65.933	1	325680			57078	1819	32636	32637	70057	70057					0.031816142952493465
VYVTLSFKKK	10	Unmodified	_VYVTLSFKKK_					0	0	0			REV__HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	REV__HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.8726196289062	2	606.871174	1211.72779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.18	1	113.18	112.68	113.68	0								0	0	0	0.38202	1	29400	29400		0.40072	0.050084	1		+		57079	16164	32637	32638	70058	70058					0.13040010505028476
VYVTSVSFEF	10	Unmodified	_VYVTSVSFEF_					0	0	0			REV__ENST00000360409.7_1_2:206661751-206661844:+|nuORF	REV__ENST00000360409.7_1_2:206661751-206661844:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.2744140625	2	589.292422	1176.57029	0.29743	0.00017527	-0.84015	-0.00049509	-0.54272	-0.00031982	589.2910912416364	65.637	0.23711	65.725	65.547	65.784	0.088882					9	8	2	0	0	0	0.18807	1	16378	16378		34.102	0	1	62893	+		57080	20256	32638	32639	70059	70059					-0.01093113825004366
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;ENSG00000170638|ENST00000380909|TRABD;nc|ENSG00000170638|Q9H4I3-2|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7637634277344	2	496.763635	991.512717	0.52685	0.00026172	-0.15461	-7.6805E-05	0.37224	0.00018492	496.7637951161815	48.648	1.9026	48.648	48.205	50.108	0					189	68	5	0	0	0	1.474E-11	6	11086	11086;11132;11175;11225;11269;11313		198.52	147.66	1	41137000			57081	6471	32639	32640	70060;70061;70062;70063;70064;70065	70060					0.01662088760087954
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;ENSG00000170638|ENST00000380909|TRABD;nc|ENSG00000170638|Q9H4I3-2|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7923889160156	2	496.763635	991.512717	0.53106	0.00026381	0.53814	0.00026733	1.0692	0.00053114	496.764092980947	51.294	0.48328	51.294	51.108	51.592	0					26	17	2	0	0	0	0.1659	1	12043	12043		36.044	14.298	1	254600			57082	6471	32639	32640	70066	70066					0.01662088760087954
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;ENSG00000170638|ENST00000380909|TRABD;nc|ENSG00000170638|Q9H4I3-2|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7637634277344	2	496.763635	991.512717	0.71347	0.00035443	-0.141	-7.0046E-05	0.57247	0.00028438	496.7635292596743	50.584	1.497	50.584	49.675	51.172	0					89	54	2	0	0	0	0.0060707	1	11753	11753		81.864	3.8797	1	629180			57083	6471	32639	32640	70067	70067					0.01662088760087954
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;ENSG00000170638|ENST00000380909|TRABD;nc|ENSG00000170638|Q9H4I3-2|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7640075683594	2	496.763635	991.512717	0.63983	0.00031785	-0.21648	-0.00010754	0.42335	0.0002103	496.7637574390717	48.646	1.9853	48.691	48.283	50.268	0.044891					196	73	5	0	0	0	1.474E-11	6	11114	11114;11158;11208;11253;11296;11361		198.52	147.66	1	40450000			57084	6471	32639	32640	70068;70069;70070;70071;70072;70073	70068					0.01662088760087954
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;ENSG00000170638|ENST00000380909|TRABD;nc|ENSG00000170638|Q9H4I3-2|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7643737792969	2	496.763635	991.512717	0.44515	0.00022114	-0.029072	-1.4442E-05	0.41608	0.00020669	496.76385529085707	48.583	2.0052	48.615	48.258	50.263	0.032043					184	73	4	0	0	0	1.474E-11	6	11103	11058;11103;11144;11189;11240;11289		198.52	147.66	1	40970000			57085	6471	32639	32640	70074;70075;70076;70077;70078;70079	70075					0.01662088760087954
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;ENSG00000170638|ENST00000380909|TRABD;nc|ENSG00000170638|Q9H4I3-2|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2474060058594	2	496.763635	991.512717	0.18523	9.2017E-05	0.2571	0.00012772	0.44234	0.00021974	496.763926756839	52.107	0.9972	52.107	51.848	52.846	-0.00081253					50	36	2	0	0	0	0.1659	1	12388	12388		28.487	7.6156	1	238500			57086	6471	32639	32640	70080	70080					0.01662088760087954
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;ENSG00000170638|ENST00000380909|TRABD;nc|ENSG00000170638|Q9H4I3-2|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	496.763635	991.512717	0.37851	0.00018803	0.014978	7.4405E-06	0.39348	0.00019547	496.76366888004986	52.334	0.3853	52.334	52.023	52.408	0	0.1139	-0.00019221	NaN	28.487	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290980			57087	6471	32639	32640							0.01662088760087954
VYWGMLWF	8	Unmodified	_VYWGMLWF_					0	0	0		ENST00000418609.5_1_4:186508297-186508507:-|nuORF	ENST00000418609.5_1_4:186508297-186508507:-|nuORF	ENST00000418609.5_1_4:186508297-186508507:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7548217773438	2	551.264956	1100.51536	0.19318	0.0001065	-1.4355	-0.00079133	-1.2423	-0.00068484	551.2639335707721	27.448	0.45707	27.426	27.13	27.587	-0.021412					26	15	2	0	0	0	0.41716	1	4649	4649		17.087	2.2483	1	104130			57088	10348	32640	32641	70081	70081					-0.030877791066131977
VYWKCRQHAE	10	Unmodified	_VYWKCRQHAE_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.58209228515625	3	440.548635	1318.62407	-0.085207	-3.7538E-05	1.7988	0.00079246	1.7136	0.00075492	440.88396390423003	19.32	0.25476	19.32	19.095	19.35	0					11	8	2	0	0	0	0.3213	1	2171	2171		1.9064	0	1	16160			57089	739	32641	32642	70082	70082					-0.02249219874283881
VYWKIYNSI	9	Unmodified	_VYWKIYNSI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.7800903320312	2	593.318774	1184.623	0.3934	0.00023341	-0.47149	-0.00027974	-0.078086	-4.633E-05	593.3184324432386	62.036	0.50667	62.036	61.81	62.316	0					41	18	3	0	0	0	0.0056456	1	15265	15265		93.166	93.166	1	580250			57090	2654	32642	32643	70083	70083					0.03806889028464866
VYWKIYNSI	9	Unmodified	_VYWKIYNSI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.780029296875	2	593.318774	1184.623	0.15428	9.1536E-05	-0.42797	-0.00025392	-0.27369	-0.00016238	593.3183924101191	61.996	0.70446	62.093	61.817	62.521	0.096985					51	25	3	0	0	0	0.020591	1	15248	15248		87.258	87.258	1	520370			57091	2654	32642	32643	70084	70084					0.03806889028464866
VYWKIYNSI	9	Unmodified	_VYWKIYNSI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7800903320312	2	593.318774	1184.623	0.26044	0.00015452	-0.40832	-0.00024226	-0.14788	-8.774E-05	593.3184194332196	62.015	0.68176	62.006	61.784	62.465	-0.0085526					46	24	3	0	0	0	0.0038965	1	15261	15261		110.55	84.285	1	595720			57092	2654	32642	32643	70085	70085					0.03806889028464866
VYWNRFQSI	9	Unmodified	_VYWNRFQSI_					0	0	0			REV__ENSG00000204381|ENST00000375614|LAYN	REV__ENSG00000204381|ENST00000375614|LAYN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.22784423828125	3	404.876857	1211.60874	0.10123	4.0985E-05	2.759	0.0011171	2.8602	0.001158	405.21239399093486	36.754	0.5277	36.754	36.511	37.039	0					32	18	3	0	0	0	0.25346	1	7581	7581		4.1895	1.1943	1	106450	+		57093	18936	32643	32644	70086	70086					0.01140236600190292
VYWNRFQSI	9	Unmodified	_VYWNRFQSI_					0	0	0			REV__ENSG00000204381|ENST00000375614|LAYN	REV__ENSG00000204381|ENST00000375614|LAYN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	404.876857	1211.60874	-0.0033011	-1.3366E-06	2.4571	0.00099482	2.4538	0.00099348	405.21204796425314	36.531	0.51634	36.613	36.458	36.975	0.082355	-0.097594	-0.0002351	NaN	4.1895	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74909	+		57094	18936	32643	32644							0.01140236600190292
VYWPERLGG	9	Unmodified	_VYWPERLGG_					0	0	0			REV__ENST00000485559.1_1_22:46749554-46749875:+|nuORF	REV__ENST00000485559.1_1_22:46749554-46749875:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8632202148438	2	538.779816	1075.54508	0.72705	0.00039172	3.8759	0.0020882	4.6029	0.00248	538.7823346392037	84.502	0.56893	84.489	84.267	84.836	-0.01284					35	22	2	0	0	0	0.2451	1	22147	22147		15.847	1.2655	1	190890	+		57095	14193	32644	32645	70087	70087					0.010328761630944427
VYWTQLNMF	9	Oxidation (M)	_VYWTQLNM(Oxidation (M))F_		VYWTQLNM(1)F		VYWTQLNM(83)F	0	0	1		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	609.2866821289062	2	609.286617	1216.55868	0.11079	6.7504E-05	0.28652	0.00017457	0.39731	0.00024208	609.2868069704518	75.808	0.66449	75.808	75.477	76.141	0					40	23	2	0	0	0	0.0079761	1	19515	19515		82.529	64.383	1	234590			57096	2840	32645	32646	70088	70088		359			-0.04093634119976741
VYWTQLNMF	9	Oxidation (M)	_VYWTQLNM(Oxidation (M))F_		VYWTQLNM(1)F		VYWTQLNM(83)F	0	0	1		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.2869873046875	2	609.286617	1216.55868	0.35276	0.00021493	0.26839	0.00016353	0.62116	0.00037846	609.7883340237344	75.794	0.65067	75.848	75.455	76.105	0.053421					41	23	2	0	0	0	0.0079761	1	19487	19487		82.529	67.281	1	269440			57097	2840	32645	32646	70089	70089		359			-0.04093634119976741
VYWTQLNMF	9	Oxidation (M)	_VYWTQLNM(Oxidation (M))F_		VYWTQLNM(1)F		VYWTQLNM(93)F	0	0	1		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.28662109375	2	609.286617	1216.55868	0.31377	0.00019118	0.269	0.0001639	0.58277	0.00035507	609.2867977065171	75.796	0.54994	75.765	75.47	76.02	-0.031487					31	19	2	0	0	0	0.0042138	2	19512	19466;19512		92.653	68.633	1	218800			57098	2840	32645	32646	70090;70091	70091		359			-0.04093634119976741
VYYAKKKRR	9	Unmodified	_VYYAKKKRR_					0	0	0		nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;nc|ENSG00000157540|Q13627-5|DYRK1A;nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A	nc|ENSG00000157540|Q13627-4|DYRK1A	nc|ENSG00000157540|Q13627-4|DYRK1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3704223632812	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.87	1	115.85	115.35	116.35	-0.020988								0	0	0	0.2672	1	30034	30034		0.52476	0	1				57099	1955	32646	32647	70092	70092					0.132924840334681
VYYEVIQLI	9	Unmodified	_VYYEVIQLI_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.3593139648438	2	570.320983	1138.62741	0.41619	0.00023736	0.46201	0.00026349	0.8782	0.00050086	570.3211706961068	87.065	0.53362	87.065	86.832	87.366	0					39	21	2	0	0	0	0.24471	1	22896	22896		17.113	1.8644	1	275920			57100	8172	32647	32648	70093	70093					0.06364353451385796
VYYEVIQLI	9	Unmodified	_VYYEVIQLI_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3102416992188	2	570.320983	1138.62741	0.38243	0.00021811	0.47631	0.00027165	0.85874	0.00048976	570.321208531481	87.038	0.5147	87.032	86.82	87.335	-0.0056229					42	21	3	0	0	0	0.26612	2	22899	22899;22944		13.906	3.0821	1	287030			57101	8172	32647	32648	70094;70095	70094					0.06364353451385796
VYYGQYISF	9	Unmodified	_VYYGQYISF_					0	0	0		ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1;ENST00000483472.1_1_9:134378440-134381848:+|nuORF	ENSG00000130714|ENST00000402686|POMT1	ENSG00000130714|ENST00000402686|POMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.7800903320312	2	570.274032	1138.53351	0.27807	0.00015858	-2.0941	-0.0011942	-1.8161	-0.0010357	570.2723343888657	73.853	0.18147	73.905	73.825	74.007	0.052361					10	5	3	0	0	0	0.21538	1	18872	18872		26.268	9.3258	1	197840			57102	3502	32648	32649	70096	70096					-0.03021365650943153
VYYGQYISF	9	Unmodified	_VYYGQYISF_					0	0	0		ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1;ENST00000483472.1_1_9:134378440-134381848:+|nuORF	ENSG00000130714|ENST00000402686|POMT1	ENSG00000130714|ENST00000402686|POMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.7802124023438	2	570.274032	1138.53351	0.20939	0.00011941	-0.28786	-0.00016416	-0.078467	-4.4748E-05	570.2740475823887	74.078	0.12072	74.047	73.938	74.059	-0.030655					5	3	2	0	0	0	0.15943	1	18928	18928		39.95	20.511	1	220360			57103	3502	32648	32649	70097	70097					-0.03021365650943153
VYYPVRHHL	9	Unmodified	_VYYPVRHHL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.322021484375	2	592.322183	1182.62981	0.16031	9.4955E-05	-0.25905	-0.00015344	-0.09874	-5.8486E-05	592.3220471378895	27.526	0.42546	27.505	27.242	27.667	-0.021412					29	14	3	0	0	0	0.088391	1	4694	4694		39.957	23.808	1	156530			57104	7854	32649	32650	70098	70098					0.045802466996974545
VYYPVRHHL	9	Unmodified	_VYYPVRHHL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	592.322183	1182.62981	0.20971	0.00012422	-0.30927	-0.00018319	-0.099562	-5.8973E-05	592.3218301956059	27.502	0.54565	27.502	27.294	27.84	0	-0.018837	-3.9114E-05	NaN	39.957	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128380			57105	7854	32649	32650							0.045802466996974545
VYYPVRHHL	9	Unmodified	_VYYPVRHHL_					0	0	0		nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	nc|ENSG00000196367|Q9Y4A5-2|TRRAP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	592.322183	1182.62981	0.12339	7.3087E-05	-0.34736	-0.00020575	-0.22396	-0.00013266	592.3217511323456	27.567	0.43732	27.556	27.266	27.703	-0.011562	0.035004	-8.4229E-05	NaN	39.957	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140550			57106	7854	32649	32650							0.045802466996974545
VYYSLHKSL	9	Unmodified	_VYYSLHKSL_					0	0	0		ENST00000555870.5_1_14:37739712-37970779:+|nuORF;nc|ENSG00000151338|Q8TD10-2|MIPOL1;ENSG00000151338|ENST00000684589|MIPOL1	ENST00000555870.5_1_14:37739712-37970779:+|nuORF	ENST00000555870.5_1_14:37739712-37970779:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3010864257812	2	555.303124	1108.5917	-0.18377	-0.00010205	-2.1867	-0.0012143	-2.3704	-0.0013163	555.3014900617869	12.666	0.24275	12.598	12.52	12.763	-0.067496					15	7	3	0	0	0	0.26204	1	216	216		1.4819	0	1	49259			57107	4954	32650	32651	70099	70099					0.04174315994373501
VYYTDHLVI	9	Unmodified	_VYYTDHLVI_					0	0	0			REV__ENSG00000198804|ENST00000361624|MT-CO1	REV__ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7952270507812	2	561.795132	1121.57571	0.46061	0.00025877	0.0069979	3.9314E-06	0.46761	0.0002627	561.7951167564293	86.762	1.4562	86.762	86.354	87.81	0					173	63	5	0	0	0	0.28674	2	22975	22975;23023		10.824	2.6684	1	4967300	+		57108	18866	32651	32652	70100;70101	70100					0.01978609757452432
VYYTDHLVI	9	Unmodified	_VYYTDHLVI_					0	0	0			REV__ENSG00000198804|ENST00000361624|MT-CO1	REV__ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.7953491210938	2	561.795132	1121.57571	0.41783	0.00023473	0.0065877	3.7009E-06	0.42441	0.00023843	561.7951157610962	86.611	2.1193	86.695	86.369	88.489	0.084251					204	100	5	0	0	0	0.25314	3	22731	22731;22926;22973		15.847	4.2069	1	5439400	+		57109	18866	32651	32652	70102;70103;70104	70102					0.01978609757452432
VYYTDHLVI	9	Unmodified	_VYYTDHLVI_					0	0	0			REV__ENSG00000198804|ENST00000361624|MT-CO1	REV__ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7950439453125	2	561.795132	1121.57571	0.40347	0.00022667	0.034073	1.9142E-05	0.43754	0.00024581	561.7951199755516	86.731	1.8309	86.725	86.342	88.173	-0.0056229					207	85	6	0	0	0	0.25314	2	22763	22763;23019		15.847	4.2069	1	4990200	+		57110	18866	32651	32652	70105;70106	70105					0.01978609757452432
WAAAEPFRAF	10	Unmodified	_WAAAEPFRAF_					0	0	0		ENST00000260641.9_1_2:65496276-65496330:+|nuORF	ENST00000260641.9_1_2:65496276-65496330:+|nuORF	ENST00000260641.9_1_2:65496276-65496330:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3056030273438	2	583.293091	1164.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.087	1	73.14	72.64	73.64	0.053833								0	0	0	0.34209	1	18654	18654		18.146	1.2041	1				57111	8959	32652	32653	70107	70107					-0.004074349455777337
WAAFLGHL	8	Unmodified	_WAAFLGHL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.276611328125	2	457.747788	913.481023	-0.25487	-0.00011667	1.3205	0.00060444	1.0656	0.00048778	457.75087639600366	12.93	0.35887	12.93	12.699	13.058	0					23	12	3	0	0	0	0.34434	1	222	222		0.79363	0	1	26639			57112	4255	32653	32654	70108	70108					0.020821407967900996
WAAFLGHL	8	Unmodified	_WAAFLGHL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	457.747788	913.481023	-0.19242	-8.808E-05	4.5352	0.002076	4.3428	0.0019879	457.75099120673576	12.993	0.3418	12.893	12.7	13.042	-0.099291	-0.015202	0.0016205	NaN	0.79363	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24033			57113	4255	32653	32654							0.020821407967900996
WAAFLGHL	8	Unmodified	_WAAFLGHL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	457.747788	913.481023	-0.26032	-0.00011916	1.728	0.00079099	1.4677	0.00067183	457.7507387576109	12.97	0.26237	12.902	12.702	12.965	-0.067495	-0.006591	-0.00094945	NaN	0.79363	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19577			57114	4255	32653	32654							0.020821407967900996
WAAQANLAL	9	Unmodified	_WAAQANLAL_					0	0	0		ENST00000538936.6_2_17:79860746-79861205:-|nuORF	ENST00000538936.6_2_17:79860746-79861205:-|nuORF	ENST00000538936.6_2_17:79860746-79861205:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.2900695800781	2	479.261259	956.507966	0.16158	7.7439E-05	-2.2696	-0.0010877	-2.108	-0.0010103	479.2607085653637	16.238	0.28638	16.175	16.038	16.324	-0.062534					11	9	2	0	0	0	0.25938	1	1285	1285		4.3292	0	1	18802			57115	11707	32654	32655	70109	70109					0.027972046173204035
WAFALLTTL	9	Unmodified	_WAFALLTTL_					0	0	0		ENST00000607711.1_1_6:15244456-15244828:-|nuORF	ENST00000607711.1_1_6:15244456-15244828:-|nuORF	ENST00000607711.1_1_6:15244456-15244828:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8161010742188	2	518.29731	1034.58007	0.37665	0.00019522	1.4918	0.00077322	1.8685	0.00096843	518.2977082453968	58.648	0.53468	58.739	58.314	58.849	0.091305					34	18	3	0	0	0	0.19839	1	14155	14155		28.487	5.3384	1	423870			57116	12314	32655	32656	70110	70110					0.06416118971037577
WAFRKWKWYQF	11	Unmodified	_WAFRKWKWYQF_					0	0	0		nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7605590820312	3	549.285739	1644.83539	0.52921	0.00029069	0.4088	0.00022455	0.938	0.00051523	549.6206286657724	30.052	0.20379	30.052	29.86	30.064	0					8	6	2	0	0	0	0.33352	1	5443	5443		0	0	1	62116			57117	3463	32656	32657	70111	70111					0.03876400159106197
WAFRKWKWYQF	11	Unmodified	_WAFRKWKWYQF_					0	0	0		nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.57855224609375	4	412.216124	1644.83539	0.26361	0.00010866	0.14482	5.9698E-05	0.40843	0.00016836	412.21623180796036	29.945	0.5385	29.958	29.72	30.258	0.012266					36	18	3	0	0	0	0.33351	1	5372	5372		0.094841	0.011491	1	98059			57118	3463	32656	32657	70112	70112					0.03876400159106197
WAKQLCVIK	9	Unmodified	_WAKQLCVIK_					0	0	0		nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2;AFAP1L2|p.L204Cfs*15|1|0.31|ENSG00000169129|chr10:114315563-114315563|A/-|frameshift_variant	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.78857421875	2	544.817887	1087.62122	0.63198	0.00034431	1.3484	0.00073464	1.9804	0.001079	545.3194532805494	16.802	0.49746	16.739	16.526	17.024	-0.062532					26	17	2	0	0	0	0.26168	1	1443	1443		1.8442	0	1	47557			57119	6329	32657	32658	70113	70113					0.08091556738850159
WALKSWAPC	9	Unmodified	_WALKSWAPC_					0	0	0		ADAMTS14|p.K861E|1|0.35|ENSG00000138316|chr10:70751631-70751631|A/G|missense_variant;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14	ADAMTS14|p.K861E|1|0.35|ENSG00000138316|chr10:70751631-70751631|A/G|missense_variant	ADAMTS14|p.K861E|1|0.35|ENSG00000138316|chr10:70751631-70751631|A/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.78955078125	2	531.265487	1060.51642	0.1677	8.9092E-05	-1.7749	-0.00094295	-1.6072	-0.00085386	531.2645722943008	13.58	0.39479	13.58	13.427	13.822	0					15	13	2	0	0	0	0.25879	1	433	433		4.756	0.42677	1	54687			57120	10	32658	32659	70114	70114					-0.011415647376907145
WALVWRGSMGL	11	Unmodified	_WALVWRGSMGL_					0	0	0			REV__ENSG00000115275|ENST00000448666|MOGS	REV__ENSG00000115275|ENST00000448666|MOGS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.5472106933594	3	425.893742	1274.6594	-0.029849	-1.2713E-05	-1.5724	-0.00066967	-1.6022	-0.00068238	425.89353627389823	38.325	0.62563	38.416	38.183	38.808	0.090881					42	22	4	0	0	0	0.33146	1	7990	7990		6.6235	2.7775	1	329670	+		57121	14871	32659	32660	70115	70115					0.03305442653550017
WALWAMYHV	9	Unmodified	_WALWAMYHV_					0	0	0		ENSG00000203995|ENST00000371528|ZYG11A;nc|ENSG00000203995|Q6WRX3-2|ZYG11A	ENSG00000203995|ENST00000371528|ZYG11A	ENSG00000203995|ENST00000371528|ZYG11A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.7872924804688	2	588.786587	1175.55862	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.097	1	18.039	17.539	18.539	-0.058174								0	0	0	0.26704	1	1827	1827		0.6015	0	1				57122	8194	32660	32661	70116	70116					-0.022135893293352638
WAMKALLI	8	Oxidation (M)	_WAM(Oxidation (M))KALLI_		WAM(1)KALLI		WAM(110)KALLI	0	0	1		nc|ENSG00000156471|P48651-2|PTDSS1;ENSG00000156471|ENST00000517309|PTDSS1	nc|ENSG00000156471|P48651-2|PTDSS1	nc|ENSG00000156471|P48651-2|PTDSS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.28076171875	2	481.280606	960.546659	0.51281	0.00024681	0.046844	2.2545E-05	0.55965	0.00026935	481.2805005548773	55.754	0.61808	55.754	55.431	56.049	0					51	21	3	0	0	0	0.016422	3	13337	13291;13337;13387		106.85	55.99	1	2205900			57123	5236	32661	32662	70117;70118;70119	70118		637			0.06480793927494233
WAMKALLI	8	Oxidation (M)	_WAM(Oxidation (M))KALLI_		WAM(1)KALLI		WAM(94)KALLI	0	0	1		nc|ENSG00000156471|P48651-2|PTDSS1;ENSG00000156471|ENST00000517309|PTDSS1	nc|ENSG00000156471|P48651-2|PTDSS1	nc|ENSG00000156471|P48651-2|PTDSS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.28076171875	2	481.280606	960.546659	0.55434	0.00026679	0.11404	5.4886E-05	0.66838	0.00032168	481.2804851009747	55.693	0.6652	55.764	55.473	56.138	0.070885					66	23	5	0	0	0	0.026049	3	13281	13281;13324;13376		93.883	51.934	1	2310100			57124	5236	32661	32662	70120;70121;70122	70120		637			0.06480793927494233
WAMKALLI	8	Oxidation (M)	_WAM(Oxidation (M))KALLI_		WAM(1)KALLI		WAM(110)KALLI	0	0	1		nc|ENSG00000156471|P48651-2|PTDSS1;ENSG00000156471|ENST00000517309|PTDSS1	nc|ENSG00000156471|P48651-2|PTDSS1	nc|ENSG00000156471|P48651-2|PTDSS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2808837890625	2	481.280606	960.546659	0.59459	0.00028616	-0.13593	-6.5422E-05	0.45865	0.00022074	481.28043785060794	55.832	0.65079	55.812	55.536	56.187	-0.019077					59	23	3	0	0	0	0.016422	2	13327	13327;13375		106.85	57.177	1	2281300			57125	5236	32661	32662	70123;70124	70123		637			0.06480793927494233
WARFSAWLE	9	Unmodified	_WARFSAWLE_					0	0	0		ENSG00000205593|ENST00000413817|DENND6B;ENST00000495607.5_1_22:50754706-50765405:-|nuORF;DENND6B|p.A244*|1|0.13|ENSG00000205593|chr22:50315741-50315742|GC/-|frameshift_variant	ENSG00000205593|ENST00000413817|DENND6B	ENSG00000205593|ENST00000413817|DENND6B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3056640625	2	583.293091	1164.57163	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.102	1	73.102	72.602	73.602	0								0	0	0	0.19932	1	18668	18668		22.736	0.98964	1				57126	8297	32662	32663	70125	70125					-0.004074349455777337
WAVPAKCPII	10	Unmodified	_WAVPAKCPII_					0	0	0			REV__ENST00000463727.1_1_10:129868414-129869560:+|nuORF	REV__ENST00000463727.1_1_10:129868414-129869560:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.312744140625	2	549.312438	1096.61032	0.27544	0.0001513	0.13893	7.6317E-05	0.41437	0.00022762	549.3124545164163	16.417	0.79171	16.417	15.867	16.659	0					54	27	3	0	0	0	0.39745	1	1303	1303		3.9444	0.3479	1	92893	+		57127	21255	32663	32664	70126	70126					0.06588154364590082
WAYPRQVFI	9	Unmodified	_WAYPRQVFI_					0	0	0		ENST00000505222.5_1_6:82901346-82950269:-|nuORF;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK	ENST00000505222.5_1_6:82901346-82950269:-|nuORF	ENST00000505222.5_1_6:82901346-82950269:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.3190307617188	2	590.319109	1178.62366	0.41348	0.00024408	-0.29996	-0.00017707	0.11351	6.7009E-05	590.3187550193203	64.792	0.65296	64.782	64.471	65.124	-0.0095291					53	23	3	0	0	0	0.037693	1	16137	16137		57.471	35.725	1	622400			57128	340	32664	32665	70127	70127					0.04149728468178182
WAYPRQVFI	9	Unmodified	_WAYPRQVFI_					0	0	0		ENST00000505222.5_1_6:82901346-82950269:-|nuORF;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK	ENST00000505222.5_1_6:82901346-82950269:-|nuORF	ENST00000505222.5_1_6:82901346-82950269:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	590.319109	1178.62366	0.51368	0.00030323	-0.083377	-4.9219E-05	0.4303	0.00025402	590.3188412206243	64.719	0.61694	64.719	64.483	65.1	0	-0.049701	0.00022635	NaN	57.471	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540450			57129	340	32664	32665							0.04149728468178182
WAYPRQVFI	9	Unmodified	_WAYPRQVFI_					0	0	0		ENST00000505222.5_1_6:82901346-82950269:-|nuORF;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENSG00000005700|ENST00000306270|IBTK	ENST00000505222.5_1_6:82901346-82950269:-|nuORF	ENST00000505222.5_1_6:82901346-82950269:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	590.319109	1178.62366	0.51254	0.00030256	-0.43216	-0.00025511	0.080375	4.7447E-05	590.3187388009587	64.712	0.72389	64.804	64.391	65.114	0.09288	0.036055	-0.00018544	NaN	57.471	60	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	562810			57130	340	32664	32665							0.04149728468178182
WCARPETSRR	10	Unmodified	_WCARPETSRR_					0	0	0		ENST00000291281.8_3_19:47214187-47217254:-|nuORF	ENST00000291281.8_3_19:47214187-47217254:-|nuORF	ENST00000291281.8_3_19:47214187-47217254:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	631.3143920898438	2	631.314563	1260.61457	0.037245	2.3513E-05	-0.51806	-0.00032706	-0.48082	-0.00030355	631.3143090081704	14.178	0.24937	14.178	14.086	14.335	0					17	8	3	0	0	0	0.41168	1	671	671		1.3295	0.13619	1	50981			57131	9154	32665	32666	70128	70128					-0.005309881598122956
WCCCFCCF	8	Unmodified	_WCCCFCCF_					0	0	0		ENST00000373874.6_1_20:35220052-35220253:+|nuORF	ENST00000373874.6_1_20:35220052-35220253:+|nuORF	ENST00000373874.6_1_20:35220052-35220253:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	507.6440734863281	2	507.64359	1013.27263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.321	1	92.41	91.91	92.91	0.089195								0	0	0	0.37992	1	24544	24544		0.79363	0	1				57132	9881	32666	32667	70129	70129					-0.23347754761607575
WCFCFWRE	8	Unmodified	_WCFCFWRE_					0	0	0		ENSG00000107742|ENST00000373109|SPOCK2	ENSG00000107742|ENST00000373109|SPOCK2	ENSG00000107742|ENST00000373109|SPOCK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.7398071289062	2	588.741322	1175.46809	-0.057455	-3.3826E-05	-2.337	-0.0013759	-2.3944	-0.0014097	588.7400174633897	12.88	0.1806	12.813	12.671	12.851	-0.067495					8	5	2	0	0	0	0.46517	1	263	263		0.6015	0.14316	1	42453			57133	2142	32667	32668	70130	70130					-0.1126238164924871
WCGVWPHLL	9	Unmodified	_WCGVWPHLL_					0	0	0			REV__ENST00000308527.5_1_15:75949866-75949983:+|nuORF	REV__ENST00000308527.5_1_15:75949866-75949983:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.780517578125	2	555.781305	1109.54806	0.38946	0.00021645	-0.24035	-0.00013358	0.14911	8.287E-05	555.7806080615634	30.388	0.4768	30.416	30.189	30.665	0.027948					38	16	3	0	0	0	0.29662	1	5588	5588		9.3474	0.60203	1	245700	+		57134	19881	32668	32669	70131	70131					-0.002335719837446959
WCGVWPHLL	9	Unmodified	_WCGVWPHLL_					0	0	0			REV__ENST00000308527.5_1_15:75949866-75949983:+|nuORF	REV__ENST00000308527.5_1_15:75949866-75949983:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7809448242188	2	555.781305	1109.54806	-0.030673	-1.7047E-05	0.1408	7.8252E-05	0.11012	6.1204E-05	555.7809135250696	30.391	0.5602	30.418	30.109	30.669	0.027159					31	19	2	0	0	0	0.29662	1	5563	5563		9.3474	0.60203	1	220130	+		57135	19881	32668	32669	70132	70132					-0.002335719837446959
WCKIVSYK	8	Unmodified	_WCKIVSYK_					0	0	0			REV__ENSG00000177414|ENST00000371077|UBE2U	REV__ENSG00000177414|ENST00000371077|UBE2U	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2413940429688	2	513.775688	1025.53682	0.16327	8.3883E-05	-0.39186	-0.00020133	-0.22859	-0.00011744	513.7755243961712	23.689	0.31675	23.689	23.513	23.829	0					20	10	2	0	0	0	0.34353	1	3515	3515		4.756	0.42677	1	51353	+		57136	17988	32669	32670	70133	70133					0.025076059220964453
WCLPAVVL	8	Unmodified	_WCLPAVVL_					0	0	0			REV__nc|ENSG00000156521|Q2T9J0-2|TYSND1	REV__nc|ENSG00000156521|Q2T9J0-2|TYSND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7538146972656	2	450.754224	899.493896	0.44625	0.00020115	-0.52855	-0.00023825	-0.082304	-3.7099E-05	450.7538521336916	84.267	0.41214	84.267	84.057	84.47	0					27	15	2	0	0	0	0.45851	1	22059	22059		2.8892	2.8892	1	245820	+		57137	16752	32670	32671	70134	70134					0.040128358646711604
WCLPAVVL	8	Unmodified	_WCLPAVVL_					0	0	0			REV__nc|ENSG00000156521|Q2T9J0-2|TYSND1	REV__nc|ENSG00000156521|Q2T9J0-2|TYSND1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	450.754224	899.493896	0.38541	0.00017372	-0.22117	-9.9692E-05	0.16424	7.4032E-05	450.75369975068304	84.125	0.78859	84.202	83.826	84.614	0.077095	-0.017553	8.0803E-05	NaN	2.8892	74	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283890	+		57138	16752	32670	32671							0.040128358646711604
WCLRWEGAVLG	11	Unmodified	_WCLRWEGAVLG_					0	0	0		MER21A_dup1924|chr21:42596367-42597211:-|1.1454877344273586|0.0472559580865997|4.6|530.0|5|1|sense	MER21A_dup1924|chr21:42596367-42597211:-|1.1454877344273586|0.0472559580865997|4.6|530.0|5|1|sense	MER21A_dup1924|chr21:42596367-42597211:-|1.1454877344273586|0.0472559580865997|4.6|530.0|5|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	645.326904296875	2	645.326608	1288.63866	0.53373	0.00034443	-0.22194	-0.00014323	0.31179	0.00020121	645.3264389505052	53.262	1.2285	53.262	53.012	54.24	0					123	45	5	0	0	0	0.44828	1	12586	12586		4.897	4.897	1	6632800			57139	12527	32671	32672	70135	70135					0.0058885227385871985
WCLWWRWW	8	Unmodified	_WCLWWRWW_					0	0	0		ENST00000393400.6_2_3:127295870-127298680:-|nuORF	ENST00000393400.6_2_3:127295870-127298680:-|nuORF	ENST00000393400.6_2_3:127295870-127298680:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.5386657714844	3	441.207773	1320.60149	-0.16393	-7.2325E-05	-0.79296	-0.00034986	-0.95689	-0.00042219	441.20842382100767	12.185	0.24169	12.089	12.053	12.295	-0.096607					10	8	2	0	0	0	0.34441	1	60	60		0.45834	0	1	14535			57140	10046	32672	32673	70136	70136					-0.04598774481246437
WCMAAEALSRG	11	Unmodified	_WCMAAEALSRG_					0	0	0		nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1;ENST00000575981.1_1_16:3022956-3024767:-|nuORF;nc|ENSG00000127564|Q99640-4|PKMYT1	nc|ENSG00000127564|Q99640-2|PKMYT1	nc|ENSG00000127564|Q99640-2|PKMYT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8189697265625	2	597.773351	1193.53215	0.46237	0.00027639	3.5227	0.0021058	3.9851	0.0023822	597.775362135907	44.238	0.31685	44.238	44.013	44.33	0					15	11	2	0	0	0	0.32855	1	9759	9759		10.8	1.4164	1	266400			57141	3328	32673	32674	70137	70137					-0.056876462829904995
WCMAAEALSRG	11	Unmodified	_WCMAAEALSRG_					0	0	0		nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1;ENST00000575981.1_1_16:3022956-3024767:-|nuORF;nc|ENSG00000127564|Q99640-4|PKMYT1	nc|ENSG00000127564|Q99640-2|PKMYT1	nc|ENSG00000127564|Q99640-2|PKMYT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	597.773351	1193.53215	0.48912	0.00029238	2.5152	0.0015035	3.0043	0.0017959	597.775420848287	43.852	0.28564	43.929	43.762	44.048	0.077515	-0.098451	-0.0013743	NaN	10.8	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228000			57142	3328	32673	32674							-0.056876462829904995
WCMAAEALSRG	11	Unmodified	_WCMAAEALSRG_					0	0	0		nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1;ENST00000575981.1_1_16:3022956-3024767:-|nuORF;nc|ENSG00000127564|Q99640-4|PKMYT1	nc|ENSG00000127564|Q99640-2|PKMYT1	nc|ENSG00000127564|Q99640-2|PKMYT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	597.773351	1193.53215	0.40678	0.00024316	4.2175	0.0025211	4.6243	0.0027643	597.7755134544223	43.832	0.2601	43.916	43.815	44.075	0.083996	-0.11196	0.00066093	NaN	10.8	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170760			57143	3328	32673	32674							-0.056876462829904995
WCPFIKVSSY	10	Unmodified	_WCPFIKVSSY_					0	0	0		ENSG00000169836|ENST00000304883|TACR3	ENSG00000169836|ENST00000304883|TACR3	ENSG00000169836|ENST00000304883|TACR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.90478515625	3	410.538965	1228.59507	0.20668	8.4849E-05	1.466	0.00060185	1.6727	0.0006867	410.87380403660876	35.726	0.38411	35.808	35.57	35.954	0.082355					16	13	2	0	0	0	0.3183	1	7178	7178		5.4027	1.8157	1	103470			57144	6390	32674	32675	70138	70138					-0.010087572232578168
WCPRPMPWH	9	Unmodified	_WCPRPMPWH_					0	0	0		ENST00000417456.1_1_1:35441975-35442986:-|nuORF	ENST00000417456.1_1_1:35441975-35442986:-|nuORF	ENST00000417456.1_1_1:35441975-35442986:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.8645324707031	3	403.853001	1208.53717	-0.42249	-0.00017062	2.6655	0.0010765	2.2431	0.00090586	403.85433463229106	13.631	0.3447	13.631	13.396	13.74	0					27	11	3	0	0	0	0.26228	1	415	415		1.1933	0	1	42329			57145	10335	32675	32676	70139	70139					-0.058752976297000714
WCPRPMPWH	9	Unmodified	_WCPRPMPWH_					0	0	0		ENST00000417456.1_1_1:35441975-35442986:-|nuORF	ENST00000417456.1_1_1:35441975-35442986:-|nuORF	ENST00000417456.1_1_1:35441975-35442986:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	403.853001	1208.53717	-0.54401	-0.0002197	3.1766	0.0012829	2.6326	0.0010632	403.8542888849712	13.761	0.3793	13.657	13.384	13.763	-0.10466	0.01288	0.00040978	NaN	2.7352	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47417			57146	10335	32675	32676							-0.058752976297000714
WCRRFLLF	8	Unmodified	_WCRRFLLF_					0	0	0			REV__ENST00000460966.1_1_2:220100924-220101164:+|nuORF	REV__ENST00000460966.1_1_2:220100924-220101164:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2303466796875	2	570.810396	1139.60624	0.37662	0.00021498	1.5612	0.00089113	1.9378	0.0011061	570.811298530559	70.599	0.94678	70.66	70.07	71.017	0.060783					58	33	2	0	0	0	0.34092	1	17958	17958		13.508	13.508	1	304210	+		57147	21211	32676	32677	70140	70140					0.042021096615144415
WCVLVELRRF	10	Unmodified	_WCVLVELRRF_					0	0	0			REV__HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|152|3|anti-sense	REV__HERVH-int_dup1453|chr3:187468601-187471591:-|3.057933698985842|0.0767631960816437|5.32|534.0|152|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.5386657714844	3	440.913025	1319.71725	-0.1702	-7.5045E-05	-0.92126	-0.0004062	-1.0915	-0.00048124	440.9117221951383	12.103	0.50414	12.006	11.905	12.409	-0.096607					34	20	2	0	0	0	0.32174	1	60	60		0.15932	0	1	14037	+		57148	22738	32677	32678	70141	70141					0.07017704578947814
WCWQCLALWW	10	Unmodified	_WCWQCLALWW_					0	0	0			REV__ENST00000314412.6_1_9:139925322-139925508:-|nuORF	REV__ENST00000314412.6_1_9:139925322-139925508:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.5433654785156	3	465.543945	1393.61	-0.080133	-3.7305E-05	-1.7702	-0.0008241	-1.8503	-0.0008614	465.5432648449265	16.731	0.91293	16.731	16.405	17.318	0					90	31	4	0	0	0	0.41805	1	1439	1439		0.15932	0.01943	1	556160	+		57149	19925	32678	32679	70142	70142					-0.07105588626950521
WDDLSMRV	8	Unmodified	_WDDLSMRV_					0	0	0			REV__ENSG00000154415|ENST00000284601|PPP1R3A	REV__ENSG00000154415|ENST00000284601|PPP1R3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.96875	2	511.242209	1020.46987	-0.082702	-4.2281E-05	0.20705	0.00010585	0.12434	6.357E-05	512.2487476617404	106.39	0.27718	106.39	106.15	106.42	0					44	38	3	0	0	0	0.34272	1	28105	28105		7.9102	7.3854	1	319130	+		57150	16666	32679	32680	70143	70143					-0.03955049359626628
WDDLSMRV	8	Unmodified	_WDDLSMRV_					0	0	0			REV__ENSG00000154415|ENST00000284601|PPP1R3A	REV__ENSG00000154415|ENST00000284601|PPP1R3A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	511.242209	1020.46987	0.1891	9.6678E-05	-4.6983	-0.002402	-4.5092	-0.0023053	511.7409338244964	106.41	0.075233	106.41	106.39	106.46	0.0050583	0.0097436	-0.0005756	NaN	7.9102	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372900	+		57151	16666	32679	32680							-0.03955049359626628
WDGAKKGSK	9	Unmodified	_WDGAKKGSK_					0	0	0			REV__ENSG00000125703|ENST00000317868|ATG4C	REV__ENSG00000125703|ENST00000317868|ATG4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2502746582031	2	488.764166	975.513779	0.20921	0.00010226	-0.70078	-0.00034252	-0.49157	-0.00024026	488.7635274531487	17.973	0.67471	17.973	17.452	18.127	0					28	22	2	0	0	0	0.24311	1	1794	1794		16.942	3.0362	1	57973	+		57152	15280	32680	32681	70144	70144					0.02504303129001073
WDHIMQATLL	10	Unmodified	_WDHIMQATLL_					0	0	0			REV__ENST00000296091.8_1_3:44754162-44761714:+|nuORF	REV__ENST00000296091.8_1_3:44754162-44761714:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.8780212402344	3	409.877869	1226.61178	-0.27811	-0.00011399	0.38603	0.00015823	0.10792	4.4236E-05	409.8779869370794	35.502	0.60302	35.502	35.17	35.773	0					48	21	3	0	0	0	0.38522	1	7132	7132		6.1918	1.1443	1	372290	+		57153	19786	32681	32682	70145	70145					0.007537436626989802
WDISQDPP	8	Unmodified	_WDISQDPP_					0	0	0		nc|ENSG00000165271|Q9H6R4-3|NOL6;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6	nc|ENSG00000165271|Q9H6R4-3|NOL6	nc|ENSG00000165271|Q9H6R4-3|NOL6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7740783691406	2	479.219257	956.423961	-0.16698	-8.0018E-05	-2.552	-0.001223	-2.7189	-0.001303	479.21801132148744	13.036	0.13763	13.036	12.952	13.09	0					6	4	2	0	0	0	0.34408	1	287	287		2.3027	0	1	7748.1			57154	5943	32682	32683	70146	70146					-0.05599371270238862
WDITDIVP	8	Unmodified	_WDITDIVP_					0	0	0			REV__ENSG00000257594|ENST00000529983|GALNT4	REV__ENSG00000257594|ENST00000529983|GALNT4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.74749755859375	2	479.74765	957.480748	0.26837	0.00012875	-0.046483	-2.23E-05	0.22188	0.00010645	479.74744067420863	91.043	0.84579	91.133	90.724	91.57	0.090668					160	64	3	0	0	0	0.46022	1	24158	24158		2.3027	0	1	6269100	+		57155	19263	32683	32684	70147	70147					0.0003067628629196406
WDLFLLSP	8	Unmodified	_WDLFLLSP_					0	0	0			REV__ENST00000263980.7_1_1:27481262-27481385:-|nuORF	REV__ENST00000263980.7_1_1:27481262-27481385:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2401428222656	2	495.768386	989.522219	0.0046316	2.2962E-06	0.033488	1.6602E-05	0.03812	1.8899E-05	495.7682695689296	24.958	0.38911	24.927	24.765	25.154	-0.03141					17	12	2	0	0	0	0.344	1	3858	3858		2.5775	0	1	56063	+		57156	19630	32684	32685	70148	70148					0.027038570456284106
WDLFLLSP	8	Unmodified	_WDLFLLSP_					0	0	0			REV__ENST00000263980.7_1_1:27481262-27481385:-|nuORF	REV__ENST00000263980.7_1_1:27481262-27481385:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	495.768386	989.522219	0.28324	0.00014042	-1.6004	-0.00079341	-1.3171	-0.00065299	495.76714184540094	25.007	0.38353	24.951	24.691	25.074	-0.055931	0.012018	-0.0012419	NaN	2.5775	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59006	+		57157	19630	32684	32685							0.027038570456284106
WDWLRKWMKLY	11	Unmodified	_WDWLRKWMKLY_					0	0	0			REV__THE1D-int_dup324|chr2:208859014-208859767:+|2.4653422611636326|0.1480688773718127|4.06|526.0|20|3|sense	REV__THE1D-int_dup324|chr2:208859014-208859767:+|2.4653422611636326|0.1480688773718127|4.06|526.0|20|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.3012084960938	3	542.286751	1623.83842	0.16487	8.9406E-05	-0.87782	-0.00047603	-0.71295	-0.00038662	542.2845573892537	39.742	0.43173	39.742	39.51	39.942	0					38	15	4	0	0	0	0.33326	1	8398	8398		1.4551	1.3819	1	306070	+		57158	23328	32685	32686	70149	70149					0.05145907221617563
WEALTEVL	8	Unmodified	_WEALTEVL_					0	0	0		ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.74798583984375	2	480.755475	959.496398	0.36939	0.00017759	0.023358	1.123E-05	0.39275	0.00018882	480.75555425696155	67.855	0.73247	67.933	67.603	68.336	0.078041					36	25	2	0	0	0	0.35375	1	17160	17160		24.674	0	1	218880			57159	6875	32686	32687	70150	70150					0.015029628033175868
WEDITGTTPL	10	Unmodified	_WEDITGTTPL_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;ANK3|p.V1315Cfs*8|1|0.35|ENSG00000151150|chr10:60084733-60084734|-/A|frameshift_variant;nc|ENSG00000151150|Q12955-7|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant	ENSG00000151150|ENST00000280772|ANK3;ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.7957763671875	2	566.779679	1131.5448	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.655	1	14.55	14.05	15.05	-0.10466								0	0	0	0.36126	1	793	793		10.074	0.6908	1				57160	4644;4941	32687	32688	70151	70151					-0.015705883474311122
WEEDSSKYSH	10	Unmodified	_WEEDSSKYSH_					0	0	0		nc|ENSG00000126091|Q11203-3|ST3GAL3;nc|ENSG00000126091|Q11203-23|ST3GAL3;nc|ENSG00000126091|Q11203-24|ST3GAL3;nc|ENSG00000126091|Q11203-2|ST3GAL3;nc|ENSG00000126091|Q11203-4|ST3GAL3	nc|ENSG00000126091|Q11203-3|ST3GAL3	nc|ENSG00000126091|Q11203-3|ST3GAL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.55780029296875	3	423.179042	1266.5153	-0.37277	-0.00015775	1.4087	0.00059614	1.036	0.0004384	423.17964865618035	13.627	0.35834	13.559	13.388	13.746	-0.067496					18	12	2	0	0	0	0.32167	1	456	456		0.62683	0.12087	1	32797			57161	12688	32688	32689	70152	70152					-0.10730152363544221
WEELSVLEV	9	Unmodified	_WEELSVLEV_					0	0	0		ENSG00000221867|ENST00000370278|MAGEA3;ENSG00000197172|ENST00000329342|MAGEA6	ENSG00000221867|ENST00000370278|MAGEA3	ENSG00000221867|ENST00000370278|MAGEA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.3014526367188	2	552.284597	1102.55464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.309	1	17.249	16.749	17.749	-0.060429								0	0	0	0.23367	1	1590	1590		11.64	0.81637	1				57162	7940	32689	32690	70153	70153					0.007465996579412604
WEKEISKQTF	10	Unmodified	_WEKEISKQTF_					0	0	0		ENSG00000283329|ENST00000637493|FAM240B	ENSG00000283329|ENST00000637493|FAM240B	ENSG00000283329|ENST00000637493|FAM240B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	648.3192138671875	2	648.335153	1294.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.41	1	61.41	60.91	61.91	0								0	0	0	0.32814	1	15087	15087		24.021	0.23079	1				57163	8758	32690	32691	70154	70154					0.02021051360634374
WEKEISKQTF	10	Unmodified	_WEKEISKQTF_					0	0	0		ENSG00000283329|ENST00000637493|FAM240B	ENSG00000283329|ENST00000637493|FAM240B	ENSG00000283329|ENST00000637493|FAM240B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	648.3191528320312	2	648.335153	1294.65575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.386	1	61.376	60.876	61.876	-0.0094566								0	0	0	0.32814	1	15070	15070		24.021	0	1				57164	8758	32690	32691	70155	70155					0.02021051360634374
WELEVFERELT	11	Unmodified	_WELEVFERELT_					0	0	0		ENSG00000173327|ENST00000309100|MAP3K11;nc|ENSG00000173327|Q16584-2|MAP3K11;ENST00000524856.1_1_11:65374036-65375591:-|nuORF	ENSG00000173327|ENST00000309100|MAP3K11	ENSG00000173327|ENST00000309100|MAP3K11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.6346130371094	3	484.245275	1449.714	0.18373	8.8972E-05	-0.13069	-6.3286E-05	0.053044	2.5686E-05	484.24527253950504	92.061	1.2087	92.061	91.471	92.679	0					251	88	6	0	0	0	0.33334	1	24587	24587		1.2148	1.2148	1	260130			57165	6716	32691	32692	70156	70156					0.007126882152761027
WELPLLRVKS	10	Unmodified	_WELPLLRVKS_					0	0	0		ENSG00000132881|ENST00000375599|CPLANE2	ENSG00000132881|ENST00000375599|CPLANE2	ENSG00000132881|ENST00000375599|CPLANE2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.8716430664062	2	620.874248	1239.73394	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.35	1	114.35	113.85	114.85	0								0	0	0	0.37044	1	29671	29671		6.2058	0.47393	1				57166	3673	32692	32693	70157	70157					0.12366528736561122
WEMLQEVK	8	Unmodified	_WEMLQEVK_					0	0	0			REV__nc|ENSG00000104723|Q13454-2|TUSC3	REV__nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3169555664062	2	531.76806	1061.52157	0.4694	0.00024961	-1.3625	-0.00072455	-0.89313	-0.00047494	532.2696072215684	32.661	0.27303	32.717	32.618	32.891	0.055309					10	9	2	0	0	0	0.34167	1	6239	6239		11.64	1.5664	1	143230	+		57167	14417	32693	32694	70158	70158					-0.006733056657594716
WENAVYFVC	9	Unmodified	_WENAVYFVC_					0	0	0		ENST00000566431.5_1_16:84853723-84896622:+|nuORF;nc|ENSG00000103196|Q9H0B8-3|CRISPLD2;ENST00000569262.5_1_16:84853723-84906729:+|nuORF;nc|ENSG00000103196|Q9H0B8-2|CRISPLD2;ENSG00000103196|ENST00000262424|CRISPLD2	ENST00000566431.5_1_16:84853723-84896622:+|nuORF	ENST00000566431.5_1_16:84853723-84896622:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7428588867188	2	565.75241	1129.49027	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.473	1	36.559	36.059	37.059	0.08625								0	0	0	0.19804	1	7406	7406		23.148	6.2061	1				57168	1816	32694	32695	70159	70159					-0.0692987869983881
WEQNNTTMKL	10	Unmodified	_WEQNNTTMKL_					0	0	0		nc|ENSG00000166833|Q8IVL1-10|NAV2	nc|ENSG00000166833|Q8IVL1-10|NAV2	nc|ENSG00000166833|Q8IVL1-10|NAV2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.91485595703125	3	422.204534	1263.59177	-0.077005	-3.2512E-05	0.28448	0.00012011	0.20748	8.7599E-05	422.20448773707597	40.812	0.29837	40.812	40.688	40.986	0					13	10	2	0	0	0	0.31746	1	8767	8767		6.1918	0	1	87679			57169	12820	32695	32696	70160	70160					-0.029480520679499023
WERLQKKIRDM	11	Unmodified	_WERLQKKIRDM_					0	0	0			REV__ENST00000491834.5_1_3:3196419-3196584:-|nuORF	REV__ENST00000491834.5_1_3:3196419-3196584:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.6343078613281	3	501.613527	1501.81875	0.45145	0.00022645	-0.32716	-0.00016411	0.12429	6.2348E-05	501.61333265284463	93.836	0.17005	93.836	93.755	93.925	-0.00051117					18	12	2	0	0	0	0.3331	1	25029	25029		2.2527	1.0379	1	74134	+		57170	14820	32696	32697	70161	70161					0.0879153121084073
WERRRARWHWR	11	Unmodified	_WERRRARWHWR_					0	0	0		ENST00000607222.1_1_1:1550199-1550712:-|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.5478210449219	4	424.480446	1693.89268	-0.11277	-4.7869E-05	1.0596	0.00044979	0.94686	0.00040192	424.4806334257613	17.758	0.43979	17.758	17.396	17.835	0					20	14	2	0	0	0	0.33352	1	1633	1633		0	0	1	27024			57171	12308	32697	32698	70162	70162					0.07348680208042424
WERRRARWHWR	11	Unmodified	_WERRRARWHWR_					0	0	0		ENST00000607222.1_1_1:1550199-1550712:-|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.8933410644531	4	424.480446	1693.89268	0.022134	9.3953E-06	1.754	0.00074452	1.7761	0.00075391	424.7318666407543	19.664	0.13557	19.609	19.516	19.652	-0.055693					5	4	2	0	0	0	0.33351	1	2282	2282		0.094841	0	1	17604			57172	12308	32697	32698	70163	70163					0.07348680208042424
WERYKREWERY	11	Unmodified	_WERYKREWERY_					0	0	0			REV__nc|ENSG00000122257|Q7Z6E9-2|RBBP6	REV__nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.294921875	3	567.614584	1699.82192	0.083021	4.7124E-05	2.2706	0.0012888	2.3536	0.0013359	567.6158003005722	66.904	0.15855	66.891	66.765	66.923	-0.013596					6	5	2	0	0	0	0.33352	1	16767	16767		0	0	1	62912	+		57173	15153	32698	32699	70164	70164					4.975892352376832E-06
WESALVIV	8	Unmodified	_WESALVIV_					0	0	0		ENST00000357179.9_1_22:22330098-22337138:-|nuORF	ENST00000357179.9_1_22:22330098-22337138:-|nuORF	ENST00000357179.9_1_22:22330098-22337138:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.76025390625	2	458.760561	915.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.426	1	85.413	84.913	85.913	-0.01284								0	0	0	0.30483	1	22425	22425		28.173	1.832	1				57174	9631	32699	32700	70165	70165					0.045435705285512995
WETPVVPLL	9	Unmodified	_WETPVVPLL_					0	0	0		ENST00000369774.8_3_10:105361047-105361260:-|nuORF	ENST00000369774.8_3_10:105361047-105361260:-|nuORF	ENST00000369774.8_3_10:105361047-105361260:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3026123046875	2	527.302593	1052.59063	0.7591	0.00040027	-0.42023	-0.00022159	0.33887	0.00017869	527.3022665737112	83.22	1.1991	83.22	82.733	83.932	0					115	45	3	0	0	0	0.1669	1	21864	21864		28.487	0	1	1141900			57175	9783	32700	32701	70166	70166					0.06644101625465737
WEWDWWFY	8	Unmodified	_WEWDWWFY_					0	0	0		MSTC_dup783|chr4:9823989-9824389:+|1.921033049629389|0.4477763399962282|2.1|541.0|7|2|sense	MSTC_dup783|chr4:9823989-9824389:+|1.921033049629389|0.4477763399962282|2.1|541.0|7|2|sense	MSTC_dup783|chr4:9823989-9824389:+|1.921033049629389|0.4477763399962282|2.1|541.0|7|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.2530517578125	3	439.850308	1316.5291	-0.00018669	-8.2115E-08	-2.4026	-0.0010568	-2.4028	-0.0010569	439.8492697121424	16.635	0.42715	16.635	16.322	16.749	0					18	14	2	0	0	0	0.34441	1	1359	1359		0.45834	0.0038233	1	37760			57176	12548	32701	32702	70167	70167					-0.11650830073836005
WFAGLGALV	9	Unmodified	_WFAGLGALV_					0	0	0			REV__ENST00000597121.5_1_19:50086773-50093643:+|nuORF	REV__ENST00000597121.5_1_19:50086773-50093643:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2611389160156	2	467.263271	932.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.102	1	98.164	97.664	98.664	0.061516								0	0	0	0.25352	1	26252	26252		5.2307	0	1		+		57177	15309	32702	32703	70168	70168					0.043032941110254797
WFDEDQHNVN	10	Unmodified	_WFDEDQHNVN_					0	0	0			REV__nc|ENSG00000041515|Q9Y6X6|MYO16	REV__nc|ENSG00000041515|Q9Y6X6|MYO16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.5712585449219	3	435.182786	1302.52653	-0.16927	-7.3662E-05	0.38375	0.000167	0.21449	9.3341E-05	435.18315389456416	19.311	0.49582	19.255	18.989	19.485	-0.055693					23	16	2	0	0	0	0.32167	1	2251	2251		0.62683	0.48693	1	37459	+		57178	13527	32703	32704	70169	70169					-0.11263330269434846
WFKPHYKIMI	10	Unmodified	_WFKPHYKIMI_					0	0	0			REV__TEC|p.P169Lfs*13|1|0.06|ENSG00000135605|chr4:48167943-48167944|-/AGCAAGA|frameshift_variant	REV__TEC|p.P169Lfs*13|1|0.06|ENSG00000135605|chr4:48167943-48167944|-/AGCAAGA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.91790771484375	3	454.917888	1361.73183	-0.099238	-4.5145E-05	-0.73454	-0.00033416	-0.83378	-0.0003793	454.91750524462657	23.013	0.8902	23.013	22.622	23.513	0					88	30	4	0	0	0	0.38952	1	3268	3268		5.4027	1.5568	1	706930	+		57179	15750	32704	32705	70170	70170					0.0654377672708506
WFKQRLAKWRR	11	Unmodified	_WFKQRLAKWRR_					0	0	0		ENST00000554144.5_1_4:57514888-57516908:-|nuORF;nc|ENSG00000171476|Q9BPY8|HOPX;ENSG00000171476|ENST00000420433|HOPX	ENST00000554144.5_1_4:57514888-57516908:-|nuORF	ENST00000554144.5_1_4:57514888-57516908:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3255004882812	3	525.644149	1573.91062	0.10904	5.7316E-05	0.48953	0.00025732	0.59857	0.00031464	525.6443764680525	106.37	0.108	106.37	106.31	106.42	0					14	13	2	0	0	0	0.33352	1	28109	28109		0	0	1	606700			57180	11831	32705	32706	70171	70171					0.1466200241018214
WFKQRLAKWRR	11	Unmodified	_WFKQRLAKWRR_					0	0	0		ENST00000554144.5_1_4:57514888-57516908:-|nuORF;nc|ENSG00000171476|Q9BPY8|HOPX;ENSG00000171476|ENST00000420433|HOPX	ENST00000554144.5_1_4:57514888-57516908:-|nuORF	ENST00000554144.5_1_4:57514888-57516908:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	525.644149	1573.91062	0.25124	0.00013206	0.13638	7.1688E-05	0.38762	0.00020375	525.6442036701842	106.37	0.079788	106.36	106.32	106.4	-0.0060501	-0.003396	-0.00026893	NaN	0	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	669610			57181	11831	32705	32706							0.1466200241018214
WFLARSLRD	9	Unmodified	_WFLARSLRD_					0	0	0			REV__ENST00000300682.14_2_17:77078803-77082428:+|nuORF	REV__ENST00000300682.14_2_17:77078803-77082428:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.31982421875	2	582.31964	1162.62473	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.792	1	16.677	16.177	17.177	-0.11434								0	0	0	0.26704	1	1436	1436		0.6015	0.076735	1		+		57182	19815	32706	32707	70172	70172					0.04991942837091301
WFLDPRILPS	10	Unmodified	_WFLDPRILPS_					0	0	0		ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|3.526883271130616|0.1449238599365492|4.61|533.0|40|2|anti-sense	ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|3.526883271130616|0.1449238599365492|4.61|533.0|40|2|anti-sense	ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|3.526883271130616|0.1449238599365492|4.61|533.0|40|2|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3470458984375	2	622.345323	1242.67609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.653	1	88.65	88.15	89.15	-0.0028381								0	0	0	0.37355	1	23415	23415		4.897	0.95262	1				57183	12337	32707	32708	70173	70173					0.06446266811144596
WFLFNFTFM	9	Unmodified	_WFLFNFTFM_					0	0	0			REV__ENSG00000127324|ENST00000247829|TSPAN8	REV__ENSG00000127324|ENST00000247829|TSPAN8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.7972412109375	2	626.79662	1251.57869	0.27374	0.00017158	0.66075	0.00041416	0.93449	0.00058574	626.7971458970858	27.185	0.60456	27.185	26.925	27.53	0					45	20	3	0	0	0	0.35512	1	4606	4606		0.6015	0	1	190630	+		57184	15336	32708	32709	70174	70174					-0.03703838389401426
WFLLLGVKVH	10	Unmodified	_WFLLLGVKVH_					0	0	0		nc|ENSG00000175121|Q8TCV5|WFDC5	nc|ENSG00000175121|Q8TCV5|WFDC5	nc|ENSG00000175121|Q8TCV5|WFDC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3698120117188	2	606.368601	1210.72265	0.41797	0.00025345	1.4649	0.00088828	1.8829	0.0011417	606.3693676689173	94.353	0.28283	94.436	94.313	94.596	0.082779					43	25	2	0	0	0	0.32162	1	25179	25179		0.45834	0	1	151420			57185	12850	32709	32710	70175	70175					0.12571751433074496
WFLLLGVKVH	10	Unmodified	_WFLLLGVKVH_					0	0	0		nc|ENSG00000175121|Q8TCV5|WFDC5	nc|ENSG00000175121|Q8TCV5|WFDC5	nc|ENSG00000175121|Q8TCV5|WFDC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.5820617675781	3	404.581493	1210.72265	0.10885	4.4038E-05	0.67748	0.0002741	0.78633	0.00031813	404.58201463370557	84.368	2.2905	84.352	83.935	86.226	-0.016823					129	91	3	0	0	0	0.41469	1	22113	22113		0.77653	0.77653	1	391070			57186	12850	32709	32710	70176	70176					0.12571751433074496
WFLLLGVKVH	10	Unmodified	_WFLLLGVKVH_					0	0	0		nc|ENSG00000175121|Q8TCV5|WFDC5	nc|ENSG00000175121|Q8TCV5|WFDC5	nc|ENSG00000175121|Q8TCV5|WFDC5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	606.368601	1210.72265	0.28622	0.00017356	2.0026	0.0012143	2.2889	0.0013879	606.3697177593629	94.692	0.35062	94.692	94.635	94.986	0	0.12824	0.00023487	NaN	0.45834	54	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84802			57187	12850	32709	32710							0.12571751433074496
WFLLLGVKVH	10	Unmodified	_WFLLLGVKVH_					0	0	0		nc|ENSG00000175121|Q8TCV5|WFDC5	nc|ENSG00000175121|Q8TCV5|WFDC5	nc|ENSG00000175121|Q8TCV5|WFDC5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	404.581493	1210.72265	0.15769	6.38E-05	0.52123	0.00021088	0.67892	0.00027468	404.58192811211285	84.317	0.35567	84.317	84.082	84.437	0	-0.017079	-0.00017597	NaN	0.77653	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301050			57188	12850	32709	32710							0.12571751433074496
WFLRGRGK	8	Unmodified	_WFLRGRGK_					0	0	0			REV__ENSG00000261857|ENST00000263369|MIA	REV__ENSG00000261857|ENST00000263369|MIA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.7645568847656	2	510.29851	1018.58247	0.073334	3.7422E-05	0.98669	0.0005035	1.06	0.00054093	510.299066086859	17.075	0.85323	16.958	16.72	17.573	-0.11739					53	30	2	0	0	0	0.344	1	1630	1630		0.69038	0	1	190260	+		57189	19287	32710	32711	70177	70177					0.07392012219372646
WFLSGDKLR	9	Unmodified	_WFLSGDKLR_					0	0	0			REV__nc|ENSG00000033178|A0AVT1-2|UBA6	REV__nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2885131835938	2	561.308741	1120.60293	0.33649	0.00018887	2.3243	0.0013046	2.6608	0.0014935	561.311105118116	17.063	0.39586	17.003	16.784	17.18	-0.060431					16	14	2	0	0	0	0.26145	1	1553	1553		2.0598	0	1	19363	+		57190	13502	32711	32712	70178	70178					0.0474513808849224
WFLVEKHWYKQ	11	Unmodified	_WFLVEKHWYKQ_					0	0	0		USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11	USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant	USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.9427490234375	3	521.94175	1562.80342	0.36939	0.0001928	1.2268	0.00064032	1.5962	0.00083312	521.9422828404759	33.305	0.58288	33.305	33.091	33.674	0					54	20	4	0	0	0	0.46392	1	6443	6443		2.8433	1.5136	1	596460			57191	1756	32712	32713	70179	70179					0.044529876853175665
WFLVEKHWYKQ	11	Unmodified	_WFLVEKHWYKQ_					0	0	0		USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11	USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant	USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	521.94175	1562.80342	0.36939	0.0001928	1.2268	0.00064032	1.5962	0.00083312	521.9422828404759	33.305	0.58288	33.305	33.091	33.674	0	0.053519	4.8578E-05	NaN	2.8433	54	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	596460			57192	1756	32712	32713							0.044529876853175665
WFLVEKHWYKQ	11	Unmodified	_WFLVEKHWYKQ_					0	0	0		USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11	USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant	USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	521.94175	1562.80342	0.34543	0.00018029	1.0997	0.00057399	1.4451	0.00075428	521.9422440315126	33.162	0.52679	33.217	32.946	33.473	0.055309	-0.034803	-0.00015041	NaN	2.8433	51	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	766820			57193	1756	32712	32713							0.044529876853175665
WFLVEKHWYKQ	11	Unmodified	_WFLVEKHWYKQ_					0	0	0		USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11	USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant	USP11|p.R494Gfs*47|1|0.21|ENSG00000102226|chrX:47242253-47242253|A/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	521.94175	1562.80342	0.30877	0.00016116	1.2227	0.00063818	1.5315	0.00079934	521.9423290439207	33.179	0.52746	33.233	32.956	33.483	0.054371	-0.018716	4.217E-05	NaN	2.8433	53	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	651220			57194	1756	32712	32713							0.044529876853175665
WFLVVFAD	8	Unmodified	_WFLVVFAD_					0	0	0		nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2	nc|ENSG00000095383|Q9BYX2-4|TBC1D2	nc|ENSG00000095383|Q9BYX2-4|TBC1D2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.30975341796875	2	498.763104	995.511654	0.49997	0.00024936	0.23618	0.0001178	0.73615	0.00036716	498.7631516313956	82.899	0.62113	82.879	82.621	83.242	-0.020576					37	24	2	0	0	0	0.34046	1	21658	21658		14.582	1.0738	1	252770			57195	1450	32713	32714	70180	70180					0.013718743911795173
WFLWERIHEWT	11	Unmodified	_WFLWERIHEWT_					0	0	0			REV__ENST00000496925.5_1_3:184024263-184025148:+|nuORF	REV__ENST00000496925.5_1_3:184024263-184025148:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.9328002929688	3	534.933254	1601.77793	-0.8776	-0.00046946	1.2821	0.00068584	0.40449	0.00021638	535.2686361335647	34.534	1.7084	34.609	34.185	35.893	0.075306					166	61	4	0	0	0	0.48486	1	6901	6901		0.094841	0.094841	1	1084400	+		57196	21676	32714	32715	70181	70181					0.0011151316286941437
WFPEGSKPFI	10	Unmodified	_WFPEGSKPFI_					0	0	0		ENSG00000237763|ENST00000370083|AMY1A;ENSG00000187733|ENST00000622339|AMY1C;ENSG00000174876|ENST00000330330|AMY1B	ENSG00000237763|ENST00000370083|AMY1A	ENSG00000237763|ENST00000370083|AMY1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	403.55462646484375	3	403.209725	1206.60735	-0.52945	-0.00021348	-2.4491	-0.00098751	-2.9786	-0.001201	403.20844801784904	14.066	0.31566	13.961	13.763	14.079	-0.10466					21	10	3	0	0	0	0.32122	1	569	569		2.086	0	1	48085			57197	6825	32715	32716	70182	70182					0.012306025114412478
WFRELELK	8	Unmodified	_WFRELELK_					0	0	0		ENSG00000007171|ENST00000313735|NOS2;nc|ENSG00000007171|P35228-2|NOS2	ENSG00000007171|ENST00000313735|NOS2	ENSG00000007171|ENST00000313735|NOS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8099365234375	2	560.811116	1119.60768	-0.12113	-6.793E-05	-1.9848	-0.0011131	-2.1059	-0.001181	560.8099061938475	24.987	0.38415	24.956	24.796	25.181	-0.031408					30	12	3	0	0	0	0.45431	1	3959	3959		4.3292	0	1	127620			57198	372	32716	32717	70183	70183					0.05266022231262468
WFRMTKIK	8	Unmodified	_WFRMTKIK_					0	0	0			REV__ENST00000411807.1_1_11:5543719-5544284:-|nuORF	REV__ENST00000411807.1_1_11:5543719-5544284:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7962646484375	2	555.318054	1108.62156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.29	1	119.29	118.79	119.79	0								0	0	0	0.38004	1	30788	30788		0.69038	0.088878	1		+		57199	20777	32717	32718	70184	70184					0.07158976458708821
WFRNRRFKLKK	11	Unmodified	_WFRNRRFKLKK_					0	0	0		ENSG00000186103|ENST00000334384|ARGFX	ENSG00000186103|ENST00000334384|ARGFX	ENSG00000186103|ENST00000334384|ARGFX	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7803955078125	3	526.987916	1577.94192	0.59149	0.00031171	1.2956	0.00068279	1.8871	0.00099449	526.9888681246871	44.492	0.76172	44.567	44.2	44.962	0.075047					39	27	2	0	0	0	0.33347	1	9879	9879		0.08335	0.08335	1	292300			57200	7588	32718	32719	70185	70185					0.1760657544427886
WFSVDYIF	8	Unmodified	_WFSVDYIF_					0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7579345703125	2	538.758018	1075.50148	0.39541	0.00021303	0.0011052	5.9542E-07	0.39651	0.00021363	538.7578632921642	92.804	0.50693	92.893	92.683	93.19	0.089195					96	44	3	0	0	0	0.42758	1	24726	24726		13.508	1.8676	1	275560	+		57201	15001	32719	32720	70186	70186					-0.03324733334056873
WFVFTNSI	8	Unmodified	_WFVFTNSI_					0	0	0			REV__ENST00000321037.4_1_6:46097874-46107367:+|nuORF	REV__ENST00000321037.4_1_6:46097874-46107367:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.79266357421875	2	507.258185	1012.50182	0.29129	0.00014776	-3.1754	-0.0016107	-2.8841	-0.001463	507.25548199571074	24.903	0.16787	24.903	24.79	24.958	0					6	5	2	0	0	0	0.34319	1	3897	3897		5.7604	0	1	21646	+		57202	19965	32720	32721	70187	70187					-0.003933136141995419
WFVPQPLPK	9	Unmodified	_WFVPQPLPK_					0	0	0			REV__ENST00000578036.5_1_17:62801160-62825332:-|nuORF	REV__ENST00000578036.5_1_17:62801160-62825332:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.318359375	2	556.318577	1110.6226	0.32775	0.00018233	-0.85836	-0.00047752	-0.53061	-0.00029519	556.3181678364363	17.08	0.40453	17.019	16.836	17.241	-0.060429					23	14	2	0	0	0	0.26168	1	1519	1519		1.8442	0.36234	1	59334	+		57203	19115	32721	32722	70188	70188					0.07171514099263732
WFYAAPLIYVL	11	Unmodified	_WFYAAPLIYVL_					0	0	0			REV__nc|ENSG00000014919|Q7KZN9-2|COX15	REV__nc|ENSG00000014919|Q7KZN9-2|COX15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.2301025390625	3	452.584792	1354.73255	0.23706	0.00010729	3.9439	0.001785	4.181	0.0018922	452.5871736248151	19.71	0.25295	19.655	19.452	19.705	-0.055693					14	8	2	0	0	0	0.33326	1	2299	2299		1.4551	0.94916	1	25688	+		57204	13450	32722	32723	70189	70189					0.06936894647787994
WGCHRVCSL	9	Unmodified	_WGCHRVCSL_					0	0	0		ENST00000433206.6_1_17:37076299-37076548:+|nuORF	ENST00000433206.6_1_17:37076299-37076548:+|nuORF	ENST00000433206.6_1_17:37076299-37076548:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7439575195312	2	530.744396	1059.47424	0.23608	0.0001253	-1.2989	-0.00068936	-1.0628	-0.00056407	530.743696492319	27.676	0.47974	27.676	27.474	27.954	0					27	16	2	0	0	0	0.25314	1	4747	4747		15.847	1.9411	1	250780			57205	10489	32723	32724	70190	70190					-0.05311863417728091
WGCHRVCSL	9	Unmodified	_WGCHRVCSL_					0	0	0		ENST00000433206.6_1_17:37076299-37076548:+|nuORF	ENST00000433206.6_1_17:37076299-37076548:+|nuORF	ENST00000433206.6_1_17:37076299-37076548:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.74365234375	2	530.744396	1059.47424	0.13027	6.9138E-05	-1.2805	-0.00067963	-1.1503	-0.00061049	530.7436608924562	27.673	0.48109	27.661	27.469	27.95	-0.01156					34	16	3	0	0	0	0.28674	1	4741	4741		10.824	0.75	1	220910			57206	10489	32723	32724	70191	70191					-0.05311863417728091
WGDLFTPA	8	Unmodified	_WGDLFTPA_					0	0	0		ENSG00000070731|ENST00000225276|ST6GALNAC2	ENSG00000070731|ENST00000225276|ST6GALNAC2	ENSG00000070731|ENST00000225276|ST6GALNAC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.24017333984375	2	453.721436	905.428318	0.14547	6.6003E-05	-1.4836	-0.00067316	-1.3382	-0.00060716	453.72083069139825	21.836	1.2803	21.836	20.942	22.222	0					64	45	2	0	0	0	0.34247	1	2914	2914		8.5933	2.8329	1	56198			57207	937	32724	32725	70192	70192					-0.028178620566791324
WGIVKYLY	8	Unmodified	_WGIVKYLY_					0	0	0		ENSG00000112164|ENST00000373256|GLP1R	ENSG00000112164|ENST00000373256|GLP1R	ENSG00000112164|ENST00000373256|GLP1R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.8091430664062	2	521.292028	1040.5695	-0.048911	-2.5497E-05	2.7987	0.001459	2.7498	0.0014335	521.2932909489095	12.655	0.27125	12.587	12.491	12.763	-0.067495					11	8	2	0	0	0	0.34434	1	211	211		0.79363	0.10326	1	27454			57208	2417	32725	32726	70193	70193					0.05084136316622789
WGIVKYLY	8	Unmodified	_WGIVKYLY_					0	0	0		ENSG00000112164|ENST00000373256|GLP1R	ENSG00000112164|ENST00000373256|GLP1R	ENSG00000112164|ENST00000373256|GLP1R	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.292028	1040.5695	0.088171	4.5963E-05	2.4557	0.0012801	2.5439	0.0013261	521.293345132418	12.595	0.17283	12.595	12.526	12.699	0	0.033736	-0.00010901	NaN	0.79363	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24757			57209	2417	32725	32726							0.05084136316622789
WGIVKYLY	8	Unmodified	_WGIVKYLY_					0	0	0		ENSG00000112164|ENST00000373256|GLP1R	ENSG00000112164|ENST00000373256|GLP1R	ENSG00000112164|ENST00000373256|GLP1R	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	521.292028	1040.5695	0.088096	4.5924E-05	2.7084	0.0014119	2.7965	0.0014578	521.2932095761164	12.599	0.23643	12.502	12.409	12.646	-0.096607	-0.059494	0.00015445	NaN	0.79363	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35536			57210	2417	32725	32726							0.05084136316622789
WGKGCATKR	9	Unmodified	_WGKGCATKR_					0	0	0		ENST00000460203.1_1_X:14032428-14038575:-|nuORF	ENST00000460203.1_1_X:14032428-14038575:-|nuORF	ENST00000460203.1_1_X:14032428-14038575:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2973937988281	2	503.766186	1005.51782	0.22079	0.00011122	-1.1153	-0.00056187	-0.89456	-0.00045065	503.7655563555939	16.457	0.39308	16.457	16.295	16.689	0					23	13	2	0	0	0	0.26031	1	1366	1366		3.5965	1.019	1	109190			57211	10722	32726	32727	70194	70194					0.015280693510590027
WGKTYLKQ	8	Unmodified	_WGKTYLKQ_					0	0	0			REV__nc|ENSG00000183091|P20929-3|NEB	REV__nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.985595703125	2	512.284734	1022.55492	0.30126	0.00015433	2.1429	0.0010978	2.4442	0.0012521	512.2825243519184	95.147	0.37347	95.145	94.948	95.321	-0.0020142					48	33	3	0	0	0	0.34247	1	25446	25446		8.5933	0.68312	1	76195	+		57212	23129	32727	32728	70195	70195					0.04454064168464811
WGLSLPFFHLF	11	Unmodified	_WGLSLPFFHLF_					0	0	0		ENST00000375050.5_1_6:32153594-32154113:-|nuORF	ENST00000375050.5_1_6:32153594-32154113:-|nuORF	ENST00000375050.5_1_6:32153594-32154113:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.562744140625	3	455.24477	1362.71248	0.084845	3.8625E-05	-1.8255	-0.00083104	-1.7406	-0.00079242	455.24313705349056	20.061	0.44019	20.061	19.739	20.18	0					27	16	3	0	0	0	0.33334	1	2387	2387		1.2148	0.4383	1	121690			57213	9906	32728	32729	70196	70196					0.04563143707832751
WGLSLPFFHLF	11	Unmodified	_WGLSLPFFHLF_					0	0	0		ENST00000375050.5_1_6:32153594-32154113:-|nuORF	ENST00000375050.5_1_6:32153594-32154113:-|nuORF	ENST00000375050.5_1_6:32153594-32154113:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	455.24477	1362.71248	0.38176	0.00017379	-2.1956	-0.00099953	-1.8138	-0.00082574	455.57862685000305	20.136	0.36064	20.081	19.788	20.149	-0.055693	0.0099348	-0.00026557	NaN	1.2148	30	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113950			57214	9906	32728	32729							0.04563143707832751
WGPRRARRLT	10	Unmodified	_WGPRRARRLT_					0	0	0			REV__ENST00000261427.9_1_4:39699686-39699818:+|nuORF	REV__ENST00000261427.9_1_4:39699686-39699818:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.8781127929688	2	634.875979	1267.73741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.69	1	111.67	111.17	112.17	-0.014244								0	0	0	0.38187	1	29055	29055		1.3295	0	1		+		57215	19592	32729	32730	70197	70197					0.114246363537859
WGRRRRKRLGS	11	Unmodified	_WGRRRRKRLGS_					0	0	0			REV__ENST00000480582.1_1_7:150555040-150557681:+|nuORF	REV__ENST00000480582.1_1_7:150555040-150557681:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.6237487792969	3	476.623748	1426.84942	0.034924	1.6646E-05	0.44361	0.00021143	0.47853	0.00022808	476.6238373201206	102.98	0.53136	102.99	102.54	103.07	0.0086594					242	73	5	0	0	0	0.48247	1	27306	27306		0.40827	0.40827	1	3210000	+		57216	21478	32730	32731	70198	70198					0.1530649043079393
WGRRRRKRLGS	11	Unmodified	_WGRRRRKRLGS_					0	0	0			REV__ENST00000480582.1_1_7:150555040-150557681:+|nuORF	REV__ENST00000480582.1_1_7:150555040-150557681:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.6238098144531	3	476.623748	1426.84942	0.19569	9.3269E-05	0.47759	0.00022763	0.67328	0.0003209	476.9583751514221	103.08	0.44904	103.08	102.7	103.15	-0.0011063					155	56	3	0	0	0	0.48247	1	27370	27370		0.40827	0.40827	1	5062000	+		57217	21478	32730	32731	70199	70199					0.1530649043079393
WHATVKAPFG	10	Unmodified	_WHATVKAPFG_					0	0	0			REV__ENSG00000181029|ENST00000596148|TRAPPC5	REV__ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2962036132812	2	557.295633	1112.57671	0.26538	0.00014789	-0.00010799	-6.0183E-08	0.26527	0.00014783	557.2954734047499	80.421	2.6751	80.394	79.351	82.026	-0.026817					169	106	3	0	0	0	0.36786	1	21133	21133		9.3831	1.473	1	431450	+		57218	18131	32731	32732	70200	70200					0.024928689170110374
WHHGGHYRS	9	Unmodified	_WHHGGHYRS_					0	0	0		ENSG00000130812|ENST00000253109|ANGPTL6	ENSG00000130812|ENST00000253109|ANGPTL6	ENSG00000130812|ENST00000253109|ANGPTL6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.3327026367188	2	568.760281	1135.50601	0.10002	5.6886E-05	0.078988	4.4925E-05	0.17901	0.00010181	568.7604763435137	12.16	0.11441	12.064	11.979	12.094	-0.096607					9	5	2	0	0	0	0.26282	1	38	38		0	0	1	18116			57219	3519	32732	32733	70201	70201					-0.05632411347914967
WHLRSEVH	8	Unmodified	_WHLRSEVH_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB;ENST00000481749.5_1_3:138374233-138426144:-|nuORF	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.2658081054688	2	532.275232	1062.53591	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.29	1	118.32	117.82	118.82	0.026253								0	0	0	0.37664	1	30634	30634		2.5775	0.27475	1				57220	669	32733	32734	70202	70202					0.007145275973925891
WHNLILKW	8	Unmodified	_WHNLILKW_					0	0	0		nc|ENSG00000100865|Q9BW66-2|CINP;ENST00000561468.5_1_14:102816372-102829233:-|nuORF;ENST00000558523.1_1_14:102821996-102829188:-|nuORF;ENSG00000100865|ENST00000216756|CINP;nc|ENSG00000100865|Q9BW66-3|CINP	nc|ENSG00000100865|Q9BW66-2|CINP	nc|ENSG00000100865|Q9BW66-2|CINP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7963256835938	2	555.316369	1108.61818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.75	1	119.78	119.28	120.28	0.027756								0	0	0	0.38004	1	30960	30960		0.69038	0	1				57221	1638	32734	32735	70203	70203					0.06822049676384268
WHPLSFPF	8	Unmodified	_WHPLSFPF_					0	0	0			REV__ENSG00000111252|ENST00000341259|SH2B3	REV__ENSG00000111252|ENST00000341259|SH2B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.310302734375	2	515.760895	1029.50724	0.11013	5.6798E-05	-0.98541	-0.00050824	-0.87529	-0.00045144	515.7604700459805	69.448	0.70527	69.426	69.153	69.858	-0.022087					53	25	4	0	0	0	0.34046	1	17660	17660		14.582	4.3983	1	683340	+		57222	14713	32735	32736	70204	70204					-0.006335900317253618
WHPVSLFSSR	10	Unmodified	_WHPVSLFSSR_					0	0	0			REV__nc|ENSG00000172780|Q86YS6-2|RAB43	REV__nc|ENSG00000172780|Q86YS6-2|RAB43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.847900390625	2	608.317097	1214.61964	0.44857	0.00027287	0.91922	0.00055918	1.3678	0.00083205	608.3177188427256	82.183	1.0845	82.252	82.069	83.153	0.068993					83	43	3	0	0	0	0.31847	1	21435	21435		3.5965	0	1	290450	+		57223	17732	32736	32737	70205	70205					0.02091638974457055
WHRTEHDRQL	10	Unmodified	_WHRTEHDRQL_					0	0	0		ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.56317138671875	3	459.897203	1376.66978	-0.067981	-3.1264E-05	1.6879	0.00077625	1.6199	0.00074499	459.8979202552935	30.555	0.53432	30.582	30.25	30.784	0.027157					28	18	2	0	0	0	0.32082	1	5621	5621		3.3196	0.47636	1	108440			57224	7049	32737	32738	70206	70206					-0.0034885836766989087
WHWLLLLTL	9	Unmodified	_WHWLLLLTL_					0	0	0			REV__ENSG00000104921|ENST00000597921|FCER2	REV__ENSG00000104921|ENST00000597921|FCER2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.857177734375	2	597.855327	1193.6961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.226	1	91.226	90.726	91.726	0.00046539								0	0	0	0.25631	1	24205	24205		4.3292	0.38484	1		+		57225	14428	32738	32739	70207	70207					0.10700062541741318
WHWLLRTGGWK	11	Unmodified	_WHWLLRTGGWK_					0	0	0		ENSG00000177455|ENST00000538922|CD19;nc|ENSG00000177455|P15391-2|CD19	ENSG00000177455|ENST00000538922|CD19	ENSG00000177455|ENST00000538922|CD19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7502136230469	3	480.594684	1438.76222	0.15591	7.4931E-05	-0.071769	-3.4492E-05	0.084144	4.0439E-05	480.5946171104026	22.282	0.67225	22.182	21.943	22.616	-0.10034					43	24	2	0	0	0	0.33146	1	3098	3098		6.6235	1.425	1	80465			57226	6987	32739	32740	70208	70208					0.060392714364752464
WIGIYSTAF	9	Unmodified	_WIGIYSTAF_					0	0	0		nc|ENSG00000141665|Q8NCQ5-2|FBXO15;ENSG00000141665|ENST00000419743|FBXO15	nc|ENSG00000141665|Q8NCQ5-2|FBXO15	nc|ENSG00000141665|Q8NCQ5-2|FBXO15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.8165893554688	2	529.271293	1056.52803	0.68516	0.00036264	-0.41088	-0.00021747	0.27428	0.00014517	529.2710870813751	82.835	0.66584	82.835	82.534	83.2	0					46	24	2	0	0	0	0.21303	1	21563	21563		21.747	2.4897	1	1189100			57227	4404	32740	32741	70209	70209					0.002029555572789832
WIGRLKRR	8	Unmodified	_WIGRLKRR_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7884521484375	2	542.846159	1083.67777	0.34976	0.00018987	-0.94651	-0.00051381	-0.59675	-0.00032395	542.8457589018261	18.137	0.37577	18.02	17.866	18.242	-0.11739					15	12	2	0	0	0	0.46491	1	1875	1875		0.69038	0	1	32697			57228	8219	32741	32742	70210	70210					0.1392736541040449
WIKFFIRGRIL	11	Unmodified	_WIKFFIRGRIL_					0	0	0			REV__ENSG00000148950|ENST00000532287|IMMP1L	REV__ENSG00000148950|ENST00000532287|IMMP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.634521484375	3	483.63448	1447.88161	0.1971	9.5324E-05	0.16013	7.7446E-05	0.35723	0.00017277	483.6344700782725	91.794	0.57765	91.794	91.32	91.898	0					133	42	4	0	0	0	0.48558	1	24297	24297		0	0	1	1415000	+		57229	16446	32742	32743	70211	70211					0.1755846506123362
WIKFFIRGRIL	11	Unmodified	_WIKFFIRGRIL_					0	0	0			REV__ENSG00000148950|ENST00000532287|IMMP1L	REV__ENSG00000148950|ENST00000532287|IMMP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.634521484375	3	483.63448	1447.88161	0.2489	0.00012038	0.082956	4.012E-05	0.33186	0.0001605	483.634447471387	91.584	0.43241	91.675	91.303	91.736	0.090668					66	34	2	0	0	0	0.48486	1	24314	24314		0.094841	0	1	1930800	+		57230	16446	32742	32743	70212	70212					0.1755846506123362
WIKFFIRGRIL	11	Unmodified	_WIKFFIRGRIL_					0	0	0			REV__ENSG00000148950|ENST00000532287|IMMP1L	REV__ENSG00000148950|ENST00000532287|IMMP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.63427734375	3	483.63448	1447.88161	0.43728	0.00021149	0.058088	2.8093E-05	0.49537	0.00023958	483.6344437540526	92.315	2.869	92.315	91.205	94.074	0.00046539					775	215	5	0	0	0	0.48558	2	24258	24258;24952		0	0	1	3596900	+		57231	16446	32742	32743	70213;70214	70213					0.1755846506123362
WIKPARKRRRR	11	Unmodified	_WIKPARKRRRR_					0	0	0		ENSG00000181090|ENST00000460843|EHMT1;nc|ENSG00000181090|Q9H9B1-4|EHMT1;ENST00000371394.6_1_9:140611085-140686569:+|nuORF;nc|ENSG00000181090|Q9H9B1-3|EHMT1	ENSG00000181090|ENST00000460843|EHMT1	ENSG00000181090|ENST00000460843|EHMT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.6606750488281	3	508.327043	1521.9593	0.066171	3.3637E-05	-0.86869	-0.00044158	-0.80252	-0.00040794	508.3265134285228	104.42	0.24128	104.42	104.38	104.63	0.0018463					78	34	3	0	0	0	0.48558	1	27762	27762		0	0	1	477940			57232	7223	32743	32744	70215	70215					0.21919915769944964
WIKVKRHA	8	Unmodified	_WIKVKRHA_					0	0	0			REV__ENST00000550686.1_1_2:172952281-172952982:+|nuORF	REV__ENST00000550686.1_1_2:172952281-172952982:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.3400268554688	2	519.321986	1036.62942	0.22992	0.0001194	-1.8354	-0.00095316	-1.6055	-0.00083375	519.3211914190118	19.304	0.57848	19.248	19.017	19.595	-0.055693					51	19	4	0	0	0	0.4397	1	2167	2167		9.3474	0	1	176790	+		57233	22202	32744	32745	70216	70216					0.11256871770501675
WILCEAHCLK	10	Unmodified	_WILCEAHCLK_					0	0	0		nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B	nc|ENSG00000168961|O00182-3|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.53662109375	3	405.87195	1214.59402	-0.046264	-1.8777E-05	-1.9877	-0.00080677	-2.034	-0.00082554	405.8710131975625	41.722	1.0577	41.812	41.754	42.811	0.090252					62	39	2	0	0	0	0.31942	1	9019	9019		1.7423	0.78	1	2200500			57234	6317	32745	32746	70217	70217					-0.0046929486384215124
WILPNVKPF	9	Unmodified	_WILPNVKPF_					0	0	0		nc|ENSG00000107518|Q5VV63-2|ATRNL1;ENSG00000107518|ENST00000355044|ATRNL1	nc|ENSG00000107518|Q5VV63-2|ATRNL1	nc|ENSG00000107518|Q5VV63-2|ATRNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7638549804688	2	557.326402	1112.63825	0.35337	0.00019694	-0.77882	-0.00043406	-0.42545	-0.00023711	557.3259884465195	71.848	1.3381	71.821	71.537	72.875	-0.027275					105	47	3	0	0	0	0.21905	1	18400	18400		23.148	7.3012	1	338430			57235	2128	32746	32747	70218	70218					0.0864380061632346
WILVCRLLVP	10	Unmodified	_WILVCRLLVP_					0	0	0		nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B	nc|ENSG00000156475|Q00005-4|PPP2R2B	nc|ENSG00000156475|Q00005-4|PPP2R2B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3719482421875	2	606.370287	1210.72602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.35	1	116.35	115.85	116.85	0								0	0	0	0.38209	1	30126	30126		0	0	1				57236	12772	32747	32748	70219	70219					0.12908678215421787
WIPQNDLLDIK	11	Unmodified	_WIPQNDLLDIK_					0	0	0		nc|ENSG00000156096|P06133-3|UGT2B4	nc|ENSG00000156096|P06133-3|UGT2B4	nc|ENSG00000156096|P06133-3|UGT2B4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	452.23016357421875	3	452.25036	1353.72925	0.091657	4.1452E-05	0.25894	0.00011711	0.3506	0.00015856	452.25066798722906	19.916	0.94575	19.916	19.211	20.157	0					83	34	4	0	0	0	0.3331	1	2229	2229		2.2527	0	1	204190			57237	12770	32748	32749	70220	70220					0.06653599803144061
WIPTLITAF	9	Unmodified	_WIPTLITAF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2;ENST00000521571.6_1_11:61607769-61608033:+|nuORF	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3191528320312	2	531.305136	1060.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.106	1	85.187	84.687	85.687	0.080887								0	0	0	0.24522	1	22333	22333		7.9102	0	1				57238	3816	32749	32750	70221	70221					0.06784405488087941
WIRAATAAV	9	Unmodified	_WIRAATAAV_					0	0	0			REV__ENST00000588899.1_1_17:76973220-76975958:-|nuORF	REV__ENST00000588899.1_1_17:76973220-76975958:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7640075683594	2	479.777077	957.5396	0.44333	0.0002127	-0.33132	-0.00015896	0.11201	5.374E-05	479.7772519905041	47.913	1.1146	47.913	47.244	48.358	0					63	39	2	0	0	0	0.17277	2	10989	10989;11040		27.629	4.6013	1	2438400	+		57239	19609	32750	32751	70222;70223	70222					0.05913197371262413
WIRAATAAV	9	Unmodified	_WIRAATAAV_					0	0	0			REV__ENST00000588899.1_1_17:76973220-76975958:-|nuORF	REV__ENST00000588899.1_1_17:76973220-76975958:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.763916015625	2	479.777077	957.5396	0.641	0.00030754	0.013652	6.5497E-06	0.65465	0.00031409	479.77716869860893	47.859	0.74466	47.906	47.646	48.39	0.047523					44	27	2	0	0	0	0.12642	2	10975	10975;11030		34.402	7.5181	1	2531800	+		57240	19609	32750	32751	70224;70225	70224					0.05913197371262413
WIRAATAAV	9	Unmodified	_WIRAATAAV_					0	0	0			REV__ENST00000588899.1_1_17:76973220-76975958:-|nuORF	REV__ENST00000588899.1_1_17:76973220-76975958:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7637634277344	2	479.777077	957.5396	0.47967	0.00023013	0.15662	7.5142E-05	0.63629	0.00030528	479.7772285036872	47.835	0.82127	47.878	47.637	48.458	0.04332					49	30	2	0	0	0	0.12642	1	10947	10947		34.402	9.7278	1	1790200	+		57241	19609	32750	32751	70226	70226					0.05913197371262413
WIRPLPIA	8	Unmodified	_WIRPLPIA_					0	0	0			REV__ENST00000433078.5_1_7:86848977-86849826:-|nuORF	REV__ENST00000433078.5_1_7:86848977-86849826:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2563781738281	2	483.300188	964.585822	0.42844	0.00020706	1.7483	0.00084493	2.1767	0.001052	483.300912230505	29.337	0.21306	29.337	29.142	29.355	0					10	7	2	0	0	0	0.3439	1	5216	5216		2.8892	0	1	74507	+		57242	20962	32751	32752	70227	70227					0.10211262273378452
WIVFLNFFF	9	Unmodified	_WIVFLNFFF_					0	0	0		Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|139|1|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|139|1|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|139|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.2020568847656	3	411.554944	1231.643	0.39021	0.00016059	0.77168	0.00031759	1.1619	0.00047818	411.55528038377275	83.998	0.55846	84.075	83.979	84.537	0.077095					34	22	2	0	0	0	0.26228	1	22011	22011		1.1933	1.1933	1	147640			57243	12359	32752	32753	70228	70228					0.03644684759069605
WIVFLNFFF	9	Unmodified	_WIVFLNFFF_					0	0	0		Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|139|1|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|139|1|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|139|1|anti-sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	411.554944	1231.643	0.35247	0.00014506	1.1366	0.00046778	1.4891	0.00061284	411.5554125599283	84.172	0.13115	84.155	84.072	84.203	-0.016823	0.039858	0.00034145	NaN	1.1933	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176470			57244	12359	32752	32753							0.03644684759069605
WIVLAAFG	8	Unmodified	_WIVLAAFG_					0	0	0			REV__ENSG00000131055|ENST00000376075|COX4I2	REV__ENSG00000131055|ENST00000376075|COX4I2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.74639892578125	2	438.752539	875.490525	0.16591	7.2792E-05	3.5521	0.0015585	3.718	0.0016313	438.7538218918063	36.747	0.29963	36.834	36.79	37.09	0.08741					13	10	2	0	0	0	0.41716	1	7532	7532		17.087	0	1	76129	+		57245	15497	32753	32754	70229	70229					0.047799090823332335
WIVLAAFG	8	Unmodified	_WIVLAAFG_					0	0	0			REV__ENSG00000131055|ENST00000376075|COX4I2	REV__ENSG00000131055|ENST00000376075|COX4I2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.74676513671875	2	438.752539	875.490525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.335	1	36.421	35.921	36.921	0.08625								0	0	0	0.34461	1	7364	7364		17.087	0	1		+		57246	15497	32753	32754	70230	70230					0.047799090823332335
WIVLAAFG	8	Unmodified	_WIVLAAFG_					0	0	0			REV__ENSG00000131055|ENST00000376075|COX4I2	REV__ENSG00000131055|ENST00000376075|COX4I2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.74639892578125	2	438.752539	875.490525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.81	1	36.903	36.403	37.403	0.093018								0	0	0	0.34461	1	7509	7509		17.087	2.5049	1		+		57247	15497	32753	32754	70231	70231					0.047799090823332335
WIVLAAFG	8	Unmodified	_WIVLAAFG_					0	0	0			REV__ENSG00000131055|ENST00000376075|COX4I2	REV__ENSG00000131055|ENST00000376075|COX4I2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.7464904785156	2	438.752539	875.490525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.97	1	37.063	36.563	37.563	0.093018								0	0	0	0.32888	1	7558	7558		24.21	7.1234	1		+		57248	15497	32753	32754	70232	70232					0.047799090823332335
WIVLAAFG	8	Unmodified	_WIVLAAFG_					0	0	0			REV__ENSG00000131055|ENST00000376075|COX4I2	REV__ENSG00000131055|ENST00000376075|COX4I2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	438.752539	875.490525	0.29709	0.00013035	6.5452	0.0028717	6.8423	0.0030021	438.75391588042316	36.838	0.337	36.838	36.787	37.124	0	0.0017353	0.0023568	NaN	17.087	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100500	+		57249	15497	32753	32754							0.047799090823332335
WIVLAAFG	8	Unmodified	_WIVLAAFG_					0	0	0			REV__ENSG00000131055|ENST00000376075|COX4I2	REV__ENSG00000131055|ENST00000376075|COX4I2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	438.752539	875.490525	0.16591	7.2792E-05	3.5521	0.0015585	3.718	0.0016313	438.7538218918063	36.747	0.29963	36.834	36.79	37.09	0.08741	-0.0017353	-0.00026965	NaN	17.087	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76129	+		57250	15497	32753	32754							0.047799090823332335
WIVWPPKRKDV	11	Unmodified	_WIVWPPKRKDV_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	REV__nc|ENSG00000168356|Q9UI33-2|SCN11A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.2781677246094	3	475.278473	1422.81359	0.51455	0.00024456	-0.42298	-0.00020103	0.091576	4.3524E-05	475.2781617466958	55.072	1.1242	55.14	54.727	55.851	0.067966					136	41	4	0	0	0	0.46554	1	13103	13103		2.6312	0	1	2548900	+		57251	17453	32754	32755	70233	70233					0.11909595410543261
WKAHDEAVR	9	Unmodified	_WKAHDEAVR_					0	0	0		PES1|p.R569W|1|0.31|ENSG00000100029|chr22:30577108-30577108|G/A|missense_variant	PES1|p.R569W|1|0.31|ENSG00000100029|chr22:30577108-30577108|G/A|missense_variant	PES1|p.R569W|1|0.31|ENSG00000100029|chr22:30577108-30577108|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8289794921875	2	556.285797	1110.55704	-0.033009	-1.8363E-05	0.68382	0.0003804	0.65081	0.00036204	556.2859937920239	12.8	0.17589	12.8	12.724	12.9	0					10	5	2	0	0	0	0.26168	1	228	228		1.8442	0	1	47344			57252	13045	32755	32756	70234	70234					0.006184929062555966
WKAPENQEEE	10	Unmodified	_WKAPENQEEE_					0	0	0		ENST00000488669.5_1_6:32148922-32149329:-|nuORF	ENST00000488669.5_1_6:32148922-32149329:-|nuORF	ENST00000488669.5_1_6:32148922-32149329:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.2822265625	2	630.280574	1258.5466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.813	1	63.906	63.406	64.406	0.09288								0	0	0	0.37807	1	15819	15819		2.9952	0	1				57253	11137	32756	32757	70235	70235					-0.07233579329454187
WKDLDKSQ	8	Unmodified	_WKDLDKSQ_					0	0	0		nc|ENSG00000159023|P11171-6|EPB41;nc|ENSG00000159023|P11171-5|EPB41	nc|ENSG00000159023|P11171-6|EPB41	nc|ENSG00000159023|P11171-6|EPB41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.27825927734375	2	510.261456	1018.50836	0.34026	0.00017362	1.0589	0.00054031	1.3992	0.00071394	510.2617990616892	19.87	0.91753	19.814	19.172	20.09	-0.055693					45	32	2	0	0	0	0.46155	1	2262	2262		1.8442	0	1	27391			57254	12784	32757	32758	70236	70236					-0.00015420453473780071
WKERVIKRP	9	Unmodified	_WKERVIKRP_					0	0	0		FAM186A|p.E1748Rfs*31|1|0.34|ENSG00000185958|chr12:50351591-50351591|A/-|frameshift_variant;FAM186A|p.D1995Vfs*14|1|0.04|ENSG00000185958|chr12:50350845-50350848|GTGT/-|frameshift_variant;ENSG00000185958|ENST00000327337|FAM186A	FAM186A|p.E1748Rfs*31|1|0.34|ENSG00000185958|chr12:50351591-50351591|A/-|frameshift_variant	FAM186A|p.E1748Rfs*31|1|0.34|ENSG00000185958|chr12:50351591-50351591|A/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3703002929688	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.27	1	116.25	115.75	116.75	-0.022781								0	0	0	0.2672	1	30125	30125		0.52476	0.12405	1				57255	12340	32758	32759	70237	70237					0.13292484033490837
WKFAPKRGR	9	Unmodified	_WKFAPKRGR_					0	0	0			REV__nc|ENSG00000165891|Q96AV8-2|E2F7	REV__nc|ENSG00000165891|Q96AV8-2|E2F7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.339111328125	2	573.338167	1144.66178	0.37439	0.00021465	1.3803	0.0007914	1.7547	0.0010061	573.3387900269732	91.113	0.36364	91.204	91.059	91.422	0.090675					40	25	2	0	0	0	0.34681	1	24136	24136		1.8442	0	1	428920	+		57256	15402	32759	32760	70238	70238					0.09523659173510168
WKFAPKRGR	9	Unmodified	_WKFAPKRGR_					0	0	0			REV__nc|ENSG00000165891|Q96AV8-2|E2F7	REV__nc|ENSG00000165891|Q96AV8-2|E2F7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.339599609375	2	573.338167	1144.66178	0.3947	0.0002263	1.282	0.00073504	1.6767	0.00096134	573.3386465364069	91.232	0.39087	91.233	91.009	91.4	0.00046539					55	24	3	0	0	0	0.34681	1	24167	24167		1.8442	0	1	581650	+		57257	15402	32759	32760	70239	70239					0.09523659173510168
WKFRKVLF	8	Unmodified	_WKFRKVLF_					0	0	0		ENST00000487777.5_1_2:207631381-207653673:+|nuORF;nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENSG00000118246|ENST00000402774|FASTKD2	ENST00000487777.5_1_2:207631381-207653673:+|nuORF	ENST00000487777.5_1_2:207631381-207653673:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3434448242188	2	562.342387	1122.67022	0.55229	0.00031058	0.68898	0.00038744	1.2413	0.00069802	562.3426637628147	83.384	1.2369	83.384	82.9	84.137	0					125	48	4	0	0	0	0.45942	1	22004	22004		2.5775	2.5775	1	1994200			57258	11124	32760	32761	70240	70240					0.11379213090117446
WKFRKVLF	8	Unmodified	_WKFRKVLF_					0	0	0		ENST00000487777.5_1_2:207631381-207653673:+|nuORF;nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENSG00000118246|ENST00000402774|FASTKD2	ENST00000487777.5_1_2:207631381-207653673:+|nuORF	ENST00000487777.5_1_2:207631381-207653673:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.34326171875	2	562.342387	1122.67022	0.51946	0.00029212	0.81563	0.00045866	1.3351	0.00075078	562.3427129619618	83.273	0.8708	83.346	83.078	83.949	0.073097					110	33	4	0	0	0	0.45942	2	21870	21870;21925		2.5775	2.5775	1	1647700			57259	11124	32760	32761	70241;70242	70241					0.11379213090117446
WKFRKVLF	8	Unmodified	_WKFRKVLF_					0	0	0		ENST00000487777.5_1_2:207631381-207653673:+|nuORF;nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENSG00000118246|ENST00000402774|FASTKD2	ENST00000487777.5_1_2:207631381-207653673:+|nuORF	ENST00000487777.5_1_2:207631381-207653673:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3433227539062	2	562.342387	1122.67022	0.46275	0.00026023	0.8786	0.00049407	1.3414	0.0007543	562.3428265293312	83.371	2.025	83.353	83.081	85.106	-0.017662					170	86	4	0	0	0	0.45942	2	21968	21968;22037		2.5775	2.5775	1	1614700			57260	11124	32760	32761	70243;70244	70243					0.11379213090117446
WKGLALSQ	8	Unmodified	_WKGLALSQ_					0	0	0		THE1B-int_dup2461|chr9:39963661-39965204:+|1.814289323776622|0.4033997191753589|2.17|537.0|43|3|sense;ENSG00000178917|ENST00000436261|ZNF852;nc|ENSG00000178917|Q6ZMS4|ZNF852	THE1B-int_dup2461|chr9:39963661-39965204:+|1.814289323776622|0.4033997191753589|2.17|537.0|43|3|sense	THE1B-int_dup2461|chr9:39963661-39965204:+|1.814289323776622|0.4033997191753589|2.17|537.0|43|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.2347106933594	2	451.758352	901.502152	-0.037116	-1.6768E-05	3.5737	0.0016145	3.5366	0.0015977	451.75976441410495	15.438	0.39798	15.328	15.151	15.549	-0.10981					19	13	2	0	0	0	0.34378	1	1059	1059		3.9444	1.3669	1	50983			57261	7084	32761	32762	70245	70245					0.0474610610565378
WKKDNKLK	8	Unmodified	_WKKDNKLK_					0	0	0		ENSG00000106004|ENST00000222726|HOXA5;ENST00000520854.1_1_7:27181456-27182390:-|nuORF;ENSG00000120075|ENST00000239151|HOXB5	ENSG00000106004|ENST00000222726|HOXA5	ENSG00000106004|ENST00000222726|HOXA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3011474609375	2	530.319109	1058.62366	0.51672	0.00027403	-1.1764	-0.00062388	-0.65971	-0.00034986	530.3181895692832	23.544	0.59255	23.505	23.255	23.848	-0.038927					41	20	3	0	0	0	0.45431	1	3543	3543		4.3292	0	1	125230			57262	2046	32762	32763	70246	70246					0.09669728468156791
WKKKLRQER	9	Unmodified	_WKKKLRQER_					0	0	0		ENST00000545213.5_1_14:24789074-24794639:-|nuORF;ENST00000557056.5_1_14:24787624-24791466:-|nuORF;ADCY4|p.V1051Kfs*2|1|0.04|ENSG00000129467|chr14:24318499-24318500|-/TT|frameshift_variant;ENSG00000129467|ENST00000418030|ADCY4	ENST00000545213.5_1_14:24789074-24794639:-|nuORF	ENST00000545213.5_1_14:24789074-24794639:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.8624877929688	2	636.388388	1270.76222	0.46105	0.00029341	-0.49833	-0.00031713	-0.037277	-2.3722E-05	636.3881492862577	33.276	0.41943	33.343	33.158	33.577	0.066704					25	14	2	0	0	0	0.26262	1	6377	6377		0.45834	0	1	215420			57263	14	32763	32764	70247	70247					0.1376727143649532
WKKKLRQER	9	Unmodified	_WKKKLRQER_					0	0	0		ENST00000545213.5_1_14:24789074-24794639:-|nuORF;ENST00000557056.5_1_14:24787624-24791466:-|nuORF;ADCY4|p.V1051Kfs*2|1|0.04|ENSG00000129467|chr14:24318499-24318500|-/TT|frameshift_variant;ENSG00000129467|ENST00000418030|ADCY4	ENST00000545213.5_1_14:24789074-24794639:-|nuORF	ENST00000545213.5_1_14:24789074-24794639:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	636.388388	1270.76222	0.57283	0.00036454	-0.47529	-0.00030247	0.097544	6.2076E-05	636.3880503973933	33.261	0.52194	33.316	33.063	33.585	0.055309	-0.032276	-0.00010323	NaN	0.45834	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146410			57264	14	32763	32764							0.1376727143649532
WKLLLNNNEM	10	Unmodified	_WKLLLNNNEM_					0	0	0			REV__CON__Q2TBQ1	REV__CON__Q2TBQ1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.25286865234375	3	425.556907	1273.64889	-0.44373	-0.00018883	4.3232	0.0018398	3.8795	0.0016509	425.5581944140206	13.127	0.36432	13.059	12.851	13.215	-0.067495					29	12	3	0	0	0	0.32139	1	272	272		0.56317	0.15491	1	51849	+	+	57265	13266	32764	32765	70248	70248					0.02301415208421531
WKNTHPDFY	9	Unmodified	_WKNTHPDFY_					0	0	0			REV__nc|ENSG00000102271|Q9C0H6-2|KLHL4	REV__nc|ENSG00000102271|Q9C0H6-2|KLHL4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.1900939941406	3	403.189212	1206.54581	0.15275	6.1585E-05	1.4624	0.00058963	1.6152	0.00065122	403.1900952105588	55.683	1.1563	55.683	54.917	56.074	0					90	41	4	0	0	0	0.30459	1	13304	13304		8.1555	0.67846	1	1697700	+		57266	14316	32765	32766	70249	70249					-0.04920329187871175
WKNVKINF	8	Unmodified	_WKNVKINF_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.8133544921875	2	524.800552	1047.58655	0.59315	0.00031129	2.4404	0.0012807	3.0336	0.001592	524.8015819908634	72.336	0.18834	72.336	72.267	72.456	0					8	6	2	0	0	0	0.35375	1	18455	18455		24.674	5.2349	1	60383			57267	7910	32766	32767	70250	70250					0.06466056922408825
WKNVKINF	8	Unmodified	_WKNVKINF_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.813232421875	2	524.800552	1047.58655	0.52745	0.0002768	-0.78736	-0.00041321	-0.25991	-0.0001364	524.8000230809331	71.75	0.84214	71.807	71.568	72.411	0.056572					66	30	3	0	0	0	0.39956	1	18424	18424		19.439	0	1	1155000			57268	7910	32766	32767	70251	70251					0.06466056922408825
WKPYIRKLY	9	Unmodified	_WKPYIRKLY_					0	0	0		ENSG00000103479|ENST00000262133|RBL2;nc|ENSG00000103479|Q08999-2|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.8720092773438	2	633.871508	1265.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.54	1	116.54	116.04	117.04	0								0	0	0	0.2672	1	30166	30166		0.52476	0	1				57269	1836	32767	32768	70252	70252					0.10622849944752488
WKPYIRKLY	9	Unmodified	_WKPYIRKLY_					0	0	0		ENSG00000103479|ENST00000262133|RBL2;nc|ENSG00000103479|Q08999-2|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.871826171875	2	633.871508	1265.72846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.73	1	117.75	117.25	118.25	0.023476								0	0	0	0.2672	1	30508	30508		0.52476	0	1				57270	1836	32767	32768	70253	70253					0.10622849944752488
WKQFNWPFGAL	11	Unmodified	_WKQFNWPFGAL_					0	0	0		BDKRB1|p.N99K|1|0.14|ENSG00000100739|chr14:96263979-96263979|C/G|missense_variant	BDKRB1|p.N99K|1|0.14|ENSG00000100739|chr14:96263979-96263979|C/G|missense_variant	BDKRB1|p.N99K|1|0.14|ENSG00000100739|chr14:96263979-96263979|C/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.16094970703125	3	465.239907	1392.69789	0.35719	0.00016618	0.37255	0.00017332	0.72974	0.0003395	465.23989510436223	20.991	0.48035	20.938	20.723	21.204	-0.05291					41	16	3	0	0	0	0.33334	1	2751	2751		1.2148	0	1	135390			57271	76	32768	32769	70254	70254					0.0172507155969015
WKQKRRREAL	10	Unmodified	_WKQKRRREAL_					0	0	0			REV__ENST00000524026.1_1_8:10692103-10697380:-|nuORF	REV__ENST00000524026.1_1_8:10692103-10697380:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.6082458496094	3	457.609105	1369.80549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.3	1	88.297	87.797	88.797	-0.0028381								0	0	0	0.37666	1	23307	23307		3.5871	0.95582	1		+		57272	19232	32769	32770	70255	70255					0.13537461213809365
WKRHIFIY	8	Unmodified	_WKRHIFIY_					0	0	0			REV__nc|ENSG00000172954|Q6UWP7-2|LCLAT1	REV__nc|ENSG00000172954|Q6UWP7-2|LCLAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.7929077148438	2	581.829643	1161.64473	0.10719	6.2365E-05	-1.7883	-0.0010405	-1.6811	-0.00097813	581.8285031771767	18.777	0.5293	18.777	18.505	19.034	0					29	18	2	0	0	0	0.34434	1	2061	2061		0.79363	0.10326	1	31555	+		57273	17751	32770	32771	70256	70256					0.07037738567692031
WKRSRRRRRKF	11	Unmodified	_WKRSRRRRRKF_					0	0	0			REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF	REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2500915527344	4	408.754005	1630.98691	0.030291	1.2382E-05	-1.0371	-0.00042393	-1.0068	-0.00041155	408.7536820470734	30.138	0.89284	30.138	29.888	30.781	0					68	31	3	0	0	0	0.33334	1	5524	5524		1.2148	1.1315	1	613740	+		57274	20723	32771	32772	70257	70257					0.19665819030160492
WKRSRRRRRKF	11	Unmodified	_WKRSRRRRRKF_					0	0	0			REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF	REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.274658203125	3	544.669581	1630.98691	0.56832	0.00030954	-1.6402	-0.00089335	-1.0719	-0.00058381	544.6691516552511	30.149	0.63561	30.149	29.917	30.553	0					53	22	3	0	0	0	0.33351	1	5579	5579		0.094841	0.094841	1	441810	+		57275	20723	32771	32772	70258	70258					0.19665819030160492
WKRSRRRRRKF	11	Unmodified	_WKRSRRRRRKF_					0	0	0			REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF	REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.2467346191406	4	408.754005	1630.98691	0.11509	4.7045E-05	-1.2016	-0.00049115	-1.0865	-0.0004441	408.75363505374446	30.147	0.79189	30.175	29.901	30.693	0.027948					58	27	3	0	0	0	0.33346	1	5572	5572		0.50596	0.50596	1	453900	+		57276	20723	32771	32772	70259	70259					0.19665819030160492
WKRSRRRRRKF	11	Unmodified	_WKRSRRRRRKF_					0	0	0			REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF	REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2745971679688	3	544.669581	1630.98691	0.66327	0.00036126	-1.5641	-0.00085194	-0.90088	-0.00049068	544.6690623587305	30.184	0.79189	30.212	29.901	30.693	0.027948					66	27	3	0	0	0	0.33351	1	5612	5612		0.094841	0.094841	1	410920	+		57277	20723	32771	32772	70260	70260					0.19665819030160492
WKRSRRRRRKF	11	Unmodified	_WKRSRRRRRKF_					0	0	0			REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF	REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.2461853027344	4	408.754005	1630.98691	-0.2471	-0.000101	-0.40919	-0.00016726	-0.65629	-0.00026826	408.7539208799486	30.22	0.82272	30.247	29.987	30.81	0.027157					54	28	2	0	0	0	0.33296	1	5554	5554		2.6312	2.5479	1	570380	+		57278	20723	32771	32772	70261	70261					0.19665819030160492
WKRSRRRRRKF	11	Unmodified	_WKRSRRRRRKF_					0	0	0			REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF	REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.2744140625	3	544.669581	1630.98691	0.30355	0.00016533	-1.3029	-0.00070964	-0.99934	-0.00054431	544.6693724928577	30.23	0.68511	30.257	30.019	30.704	0.027159					68	23	4	0	0	0	0.33351	1	5616	5616		0.094841	0.094841	1	359620	+		57279	20723	32771	32772	70262	70262					0.19665819030160492
WKSERYHPK	9	Unmodified	_WKSERYHPK_					0	0	0		ENST00000496445.5_1_10:114207222-114224375:+|nuORF	ENST00000496445.5_1_10:114207222-114224375:+|nuORF	ENST00000496445.5_1_10:114207222-114224375:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.5055847167969	3	410.884123	1229.63054	-0.11625	-4.7763E-05	0.17645	7.2503E-05	0.06021	2.4739E-05	410.88403844548554	15.542	1.0236	15.477	15.069	16.092	-0.064413					89	34	4	0	0	0	0.26169	1	970	970		2.2828	0.69049	1	140660			57280	11236	32772	32773	70263	70263					0.024910413487532423
WKTRLSYFL	9	Unmodified	_WKTRLSYFL_					0	0	0		ENST00000483295.1_1_1:192778201-192779398:+|nuORF;nc|ENSG00000116741|P41220-4|RGS2;nc|ENSG00000116741|P41220-3|RGS2;nc|ENSG00000116741|P41220-2|RGS2;ENSG00000116741|ENST00000235382|RGS2	ENST00000483295.1_1_1:192778201-192779398:+|nuORF	ENST00000483295.1_1_1:192778201-192779398:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.2472229003906	3	405.229119	1212.66553	-0.22261	-9.0208E-05	-0.75996	-0.00030796	-0.98257	-0.00039817	405.89818505180585	15.959	0.97931	15.897	15.607	16.586	-0.062533					66	33	4	0	0	0	0.2603	1	1380	1380		4.1895	0	1	58217			57281	2747	32773	32774	70264	70264					0.06770284156687012
WKWFKHIIRFI	11	Unmodified	_WKWFKHIIRFI_					0	0	0		ENST00000409175.5_1_2:160599702-160602296:+|nuORF	ENST00000409175.5_1_2:160599702-160602296:+|nuORF	ENST00000409175.5_1_2:160599702-160602296:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.6442260742188	3	525.309996	1572.90816	0.19473	0.00010229	-0.062244	-3.2697E-05	0.13248	6.9594E-05	525.3097845983481	97.56	2.1375	97.56	96.713	98.85	0					653	229	5	0	0	0	0.48558	1	26310	26310		0	0	1	2437500			57282	10241	32774	32775	70265	70265					0.14462153952536028
WKWFKHIIRFI	11	Unmodified	_WKWFKHIIRFI_					0	0	0		ENST00000409175.5_1_2:160599702-160602296:+|nuORF	ENST00000409175.5_1_2:160599702-160602296:+|nuORF	ENST00000409175.5_1_2:160599702-160602296:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.6444091796875	3	525.309996	1572.90816	0.30647	0.00016099	-0.12534	-6.5841E-05	0.18114	9.5153E-05	525.3097416542644	97.512	2.2193	97.583	96.703	98.923	0.070465					570	248	5	0	0	0	0.48558	1	26085	26085		0	0	1	1941100			57283	10241	32774	32775	70266	70266					0.14462153952536028
WKWFKHIIRFI	11	Unmodified	_WKWFKHIIRFI_					0	0	0		ENST00000409175.5_1_2:160599702-160602296:+|nuORF	ENST00000409175.5_1_2:160599702-160602296:+|nuORF	ENST00000409175.5_1_2:160599702-160602296:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	525.309996	1572.90816	0.30647	0.00016099	-0.12534	-6.5841E-05	0.18114	9.5153E-05	525.3097416542644	97.512	2.2193	97.583	96.703	98.923	0.070465	-0.11376	-5.591E-06	NaN	0	570	248	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1941100			57284	10241	32774	32775							0.14462153952536028
WKWGLESF	8	Unmodified	_WKWGLESF_					0	0	0		nc|ENSG00000267908|P0CG00|ZSCAN5DP	nc|ENSG00000267908|P0CG00|ZSCAN5DP	nc|ENSG00000267908|P0CG00|ZSCAN5DP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7635498046875	2	526.763635	1051.51272	0.68827	0.00036256	-0.76788	-0.00040449	-0.079615	-4.1938E-05	526.7629769918349	66.249	0.76291	66.249	65.955	66.717	0					67	26	3	0	0	0	0.43043	3	16545	16545;16590;16656		12.532	12.532	1	911070			57285	12990	32775	32776	70267;70268;70269	70267					-0.010979112399127189
WKWGLESF	8	Unmodified	_WKWGLESF_					0	0	0		nc|ENSG00000267908|P0CG00|ZSCAN5DP	nc|ENSG00000267908|P0CG00|ZSCAN5DP	nc|ENSG00000267908|P0CG00|ZSCAN5DP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7633666992188	2	526.763635	1051.51272	0.6166	0.0003248	-0.67687	-0.00035655	-0.060271	-3.1749E-05	526.7630242301434	66.134	0.8497	66.218	65.86	66.71	0.083832					77	30	3	0	0	0	0.43043	1	16554	16554		12.532	2.3482	1	987610			57286	12990	32775	32776	70270	70270					-0.010979112399127189
WKWGLESF	8	Unmodified	_WKWGLESF_					0	0	0		nc|ENSG00000267908|P0CG00|ZSCAN5DP	nc|ENSG00000267908|P0CG00|ZSCAN5DP	nc|ENSG00000267908|P0CG00|ZSCAN5DP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7633666992188	2	526.763635	1051.51272	0.52567	0.0002769	-0.66321	-0.00034935	-0.13754	-7.2449E-05	526.7630297351224	66.247	0.90105	66.233	65.89	66.791	-0.013588					81	32	4	0	0	0	0.43043	1	16531	16531		12.532	12.532	1	970170			57287	12990	32775	32776	70271	70271					-0.010979112399127189
WKWTRWKCFIE	11	Unmodified	_WKWTRWKCFIE_					0	0	0			REV__ENST00000379143.9_1_20:5098158-5098257:-|nuORF	REV__ENST00000379143.9_1_20:5098158-5098257:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.6610717773438	3	528.271101	1581.79147	0.34341	0.00018142	0.39028	0.00020617	0.73369	0.00038759	528.2709432946069	94.464	0.103	94.464	94.384	94.487	0					11	9	2	0	0	0	0.3333	1	25182	25182		1.3296	1.2348	1	59098	+		57288	20527	32776	32777	70272	70272					0.023850476704865287
WKWTRWKCFIE	11	Unmodified	_WKWTRWKCFIE_					0	0	0			REV__ENST00000379143.9_1_20:5098158-5098257:-|nuORF	REV__ENST00000379143.9_1_20:5098158-5098257:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.6610107421875	3	528.271101	1581.79147	0.29272	0.00015463	0.61572	0.00032527	0.90844	0.0004799	528.6060120252804	96.299	0.15656	96.376	96.301	96.458	0.077408					19	14	2	0	0	0	0.33347	1	25753	25753		0.45452	0.046251	1	92899	+		57289	20527	32776	32777	70273	70273					0.023850476704865287
WKWTRWKCFIE	11	Unmodified	_WKWTRWKCFIE_					0	0	0			REV__ENST00000379143.9_1_20:5098158-5098257:-|nuORF	REV__ENST00000379143.9_1_20:5098158-5098257:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.6609497070312	3	528.271101	1581.79147	0.53849	0.00028447	0.66318	0.00035034	1.2017	0.00063481	528.6057075186251	96.129	0.23682	96.125	95.992	96.228	-0.0038147					30	22	2	0	0	0	0.33347	1	25664	25664		0.45452	0.35968	1	143690	+		57290	20527	32776	32777	70274	70274					0.023850476704865287
WLAPAHFPI	9	Unmodified	_WLAPAHFPI_					0	0	0		ENST00000526701.5_1_11:8721552-8724378:-|nuORF	ENST00000526701.5_1_11:8721552-8724378:-|nuORF	ENST00000526701.5_1_11:8721552-8724378:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2913208007812	2	526.28982	1050.56509	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.461	1	12.364	11.864	12.864	-0.096607								0	0	0	0.26258	1	135	135		2.3027	0.82083	1				57291	11562	32777	32778	70275	70275					0.04182671893704537
WLAWCLWNQ	9	Unmodified	_WLAWCLWNQ_					0	0	0		ENST00000309862.10_1_17:37829058-37830070:-|nuORF;nc|ENSG00000161395|Q96FM1-2|PGAP3;nc|ENSG00000161395|Q96FM1-3|PGAP3;ENSG00000161395|ENST00000300658|PGAP3	ENST00000309862.10_1_17:37829058-37830070:-|nuORF	ENST00000309862.10_1_17:37829058-37830070:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.1952209472656	3	407.195421	1218.56443	0.23082	9.3987E-05	-0.43921	-0.00017884	-0.20839	-8.4856E-05	407.19529931713714	20.591	0.56416	20.481	20.215	20.779	-0.11003					42	20	3	0	0	0	0.33911	1	2635	2635		2.9952	0.90923	1	146270			57292	5514	32778	32779	70276	70276					-0.03610490817663958
WLCLFSSAW	9	Unmodified	_WLCLFSSAW_					0	0	0			REV__nc|ENSG00000161652|Q6UXV1-2|IZUMO2	REV__nc|ENSG00000161652|Q6UXV1-2|IZUMO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7662353515625	2	556.76532	1111.51609	0.49573	0.00027601	1.8963	0.0010558	2.392	0.0013318	556.7660997044669	72.457	0.7345	72.514	72.057	72.792	0.056572					43	22	3	0	0	0	0.23783	1	18463	18463		18.135	1.1927	1	289000	+		57293	23054	32779	32780	70277	70277					-0.03520984457554732
WLCLKTKTR	9	Unmodified	_WLCLKTKTR_					0	0	0		ENST00000474931.5_1_10:35500231-35500321:+|nuORF	ENST00000474931.5_1_10:35500231-35500321:+|nuORF	ENST00000474931.5_1_10:35500231-35500321:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.8113403320312	2	574.834069	1147.65358	0.0057251	3.291E-06	-3.7942	-0.002181	-3.7885	-0.0021778	574.8321016158629	13.265	0.23373	13.165	13.042	13.276	-0.099291					10	7	2	0	0	0	0.26145	1	358	358		2.0598	0.21551	1	41583			57294	10929	32780	32781	70278	70278					0.0856634414187738
WLCREPIWE	9	Unmodified	_WLCREPIWE_					0	0	0			REV__ENST00000572915.6_1_17:2573570-2586914:+|nuORF	REV__ENST00000572915.6_1_17:2573570-2586914:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.8840026855469	3	411.202465	1230.58556	-0.041699	-1.7147E-05	3.6011	0.0014808	3.5594	0.0014636	411.20392762110765	15.765	0.48928	15.655	15.436	15.925	-0.10981					39	16	4	0	0	0	0.2603	1	1113	1113		4.1895	1.691	1	34181	+		57295	22423	32781	32782	70279	70279					-0.020505255087982732
WLDSLQLIQQ	10	Unmodified	_WLDSLQLIQQ_					0	0	0			REV__ENSG00000116685|ENST00000376572|KIAA2013	REV__ENSG00000116685|ENST00000376572|KIAA2013	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.8946228027344	3	415.227556	1242.66084	0.016452	6.8315E-06	3.6816	0.0015287	3.698	0.0015355	415.2291005082774	14.801	0.27902	14.691	14.51	14.789	-0.10981					15	9	2	0	0	0	0.32095	1	798	798		3.0723	0.57378	1	41054	+		57296	14931	32782	32783	70280	70280					0.04921355223291357
WLEPKNAF	8	Unmodified	_WLEPKNAF_					0	0	0		nc|ENSG00000092068|Q9UHI5-2|SLC7A8;nc|ENSG00000092068|Q9UHI5-4|SLC7A8;ENSG00000092068|ENST00000316902|SLC7A8	nc|ENSG00000092068|Q9UHI5-2|SLC7A8	nc|ENSG00000092068|Q9UHI5-2|SLC7A8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7743835449219	2	502.763635	1003.51272	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.438	1	42.524	42.024	43.024	0.085197								0	0	0	0.36336	1	9235	9235		8.5933	0	1				57297	1417	32783	32784	70281	70281					0.01110088760083272
WLERVMEQM	9	Unmodified	_WLERVMEQM_					0	0	0			REV__nc|ENSG00000175170|Q5T319-2|FAM182B	REV__nc|ENSG00000175170|Q5T319-2|FAM182B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.1952819824219	3	407.863343	1220.5682	-0.023307	-9.5062E-06	-1.5454	-0.0006303	-1.5687	-0.0006398	407.8637682680522	20.405	0.23191	20.405	20.31	20.542	0					9	7	2	0	0	0	0.2615	1	2563	2563		2.4985	1.722	1	44473	+		57298	23093	32784	32785	70282	70282					-0.03326189106110178
WLFKYLQFV	9	Unmodified	_WLFKYLQFV_					0	0	0			REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3457641601562	2	622.347335	1242.68012	0.53485	0.00033287	-0.84671	-0.00052695	-0.31186	-0.00019408	622.3463116778828	83.14	0.50783	83.14	82.813	83.321	0					32	19	2	0	0	0	0.34681	1	21682	21682		1.8442	0	1	118050	+		57299	20743	32785	32786	70283	70283					0.06848356304840308
WLFKYLQFV	9	Unmodified	_WLFKYLQFV_					0	0	0			REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3471069335938	2	622.347335	1242.68012	0.53361	0.00033209	-0.88851	-0.00055296	-0.35489	-0.00022087	622.3464094542064	84.676	0.60997	84.676	84.405	85.015	0					39	22	2	0	0	0	0.34681	1	22145	22145		1.8442	0.36234	1	240010	+		57300	20743	32785	32786	70284	70284					0.06848356304840308
WLFKYLQFV	9	Unmodified	_WLFKYLQFV_					0	0	0			REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3463745117188	2	622.347335	1242.68012	0.49695	0.00030928	-0.28936	-0.00018008	0.20759	0.00012919	622.3470765266429	85.83	2.7365	85.83	84.994	87.731	0					216	110	3	0	0	0	0.34681	2	22324	22324;23008		1.8442	0.36234	1	1062300	+		57301	20743	32785	32786	70285;70286	70285					0.06848356304840308
WLFKYLQFV	9	Unmodified	_WLFKYLQFV_					0	0	0			REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.8502197265625	2	622.347335	1242.68012	0.27701	0.0001724	-0.22763	-0.00014166	0.049381	3.0732E-05	622.3470469691697	83.887	1.7177	83.964	83.214	84.931	0.077095					110	67	2	0	0	0	0.34681	1	21839	21839		1.8442	0.36234	1	338500	+		57302	20743	32785	32786	70287	70287					0.06848356304840308
WLFKYLQFV	9	Unmodified	_WLFKYLQFV_					0	0	0			REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.346923828125	2	622.347335	1242.68012	0.19645	0.00012226	-0.00627	-3.9021E-06	0.19018	0.00011836	622.3471316749807	85.769	2.5488	85.854	85.024	87.573	0.084251					256	102	3	0	0	0	0.34681	1	22294	22294		1.8442	0.19162	1	1032600	+		57303	20743	32785	32786	70288	70288					0.06848356304840308
WLFKYLQFV	9	Unmodified	_WLFKYLQFV_					0	0	0			REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.3478393554688	2	622.347335	1242.68012	0.14431	8.981E-05	-0.20944	-0.00013035	-0.065134	-4.0536E-05	622.3470639314692	87.505	0.19441	87.593	87.504	87.699	0.087097					12	8	2	0	0	0	0.34681	1	23095	23095		1.8442	0.36234	1	171960	+		57304	20743	32785	32786	70289	70289					0.06848356304840308
WLFKYLQFV	9	Unmodified	_WLFKYLQFV_					0	0	0			REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3457641601562	2	622.347335	1242.68012	0.37438	0.000233	-0.25543	-0.00015896	0.11895	7.4031E-05	622.347035965394	85.773	3.0068	85.764	84.921	87.928	-0.0090103					276	128	4	0	0	0	0.33276	2	23109	23109;23121		3.9444	3.9444	1	1118300	+		57305	20743	32785	32786	70290;70291	70290					0.06848356304840308
WLFKYLQFV	9	Unmodified	_WLFKYLQFV_					0	0	0			REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3438720703125	2	622.347335	1242.68012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.347	1	88.344	87.844	88.844	-0.0028381								0	0	0	0.25631	1	23321	23321		4.3292	1.8308	1		+		57306	20743	32785	32786	70292	70292					0.06848356304840308
WLFKYLQFV	9	Unmodified	_WLFKYLQFV_					0	0	0			REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	622.347335	1242.68012	0.53485	0.00033287	-0.84671	-0.00052695	-0.31186	-0.00019408	622.3463116778828	83.14	0.50783	83.14	82.813	83.321	0	0.022663	-0.00043604	NaN	1.8442	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118050	+		57307	20743	32785	32786							0.06848356304840308
WLFYISLF	8	Unmodified	_WLFYISLF_					0	0	0			REV__ENST00000225388.8_1_17:27590872-27591025:-|nuORF	REV__ENST00000225388.8_1_17:27590872-27591025:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3174438476562	2	544.794404	1087.57425	0.066513	3.6236E-05	-2.4857	-0.0013542	-2.4192	-0.001318	545.2953105434324	113.63	0.31464	113.63	113.46	113.78	0					54	37	2	0	0	0	0.34319	1	29486	29486		5.7604	2.8712	1	28040	+		57308	19435	32786	32787	70293	70293					0.03397020459374289
WLFYISLF	8	Unmodified	_WLFYISLF_					0	0	0			REV__ENST00000225388.8_1_17:27590872-27591025:-|nuORF	REV__ENST00000225388.8_1_17:27590872-27591025:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2949829101562	2	544.794404	1087.57425	0.55383	0.00030173	-2.8039	-0.0015275	-2.25	-0.0012258	545.2950931735272	112.22	0.3783	112.23	112.15	112.52	0.0131					77	47	2	0	0	0	0.44842	2	29224	29224;29253		6.3541	1.1234	1	87814	+		57309	19435	32786	32787	70294;70295	70294					0.03397020459374289
WLFYISLF	8	Unmodified	_WLFYISLF_					0	0	0			REV__ENST00000225388.8_1_17:27590872-27591025:-|nuORF	REV__ENST00000225388.8_1_17:27590872-27591025:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2949829101562	2	544.794404	1087.57425	0.55383	0.00030173	-2.8039	-0.0015275	-2.25	-0.0012258	545.2950931735272	112.22	0.3783	112.23	112.15	112.52	0.0131					77	47	2	0	0	0	0.34297	1	29224	29224		6.3541	1.1234	1	87814	+		57310	19435	32786	32787	70296	70296					0.03397020459374289
WLGLLKHWG	9	Unmodified	_WLGLLKHWG_					0	0	0			REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	REV__nc|ENSG00000160460|Q9H254-4|SPTBN4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3171997070312	2	555.316369	1108.61818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.85	1	117.83	117.33	118.33	-0.024147								0	0	0	0.26829	1	30488	30488		0	0	1		+		57311	16903	32787	32788	70297	70297					0.06822049676338793
WLGVIRYL	8	Unmodified	_WLGVIRYL_					0	0	0		MCOLN3|p.N456Mfs*18|1|0.3|ENSG00000055732|chr1:85021230-85021230|T/-|frameshift_variant;nc|ENSG00000055732|Q8TDD5-2|MCOLN3;ENSG00000055732|ENST00000370589|MCOLN3	MCOLN3|p.N456Mfs*18|1|0.3|ENSG00000055732|chr1:85021230-85021230|T/-|frameshift_variant	MCOLN3|p.N456Mfs*18|1|0.3|ENSG00000055732|chr1:85021230-85021230|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.30572509765625	2	510.30547	1018.59639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.24	1	112.24	111.74	112.74	0								0	0	0	0.38004	1	29180	29180		0.69038	0	1				57312	12523	32788	32789	70298	70298					0.08783244927803935
WLGVIRYL	8	Unmodified	_WLGVIRYL_					0	0	0		MCOLN3|p.N456Mfs*18|1|0.3|ENSG00000055732|chr1:85021230-85021230|T/-|frameshift_variant;nc|ENSG00000055732|Q8TDD5-2|MCOLN3;ENSG00000055732|ENST00000370589|MCOLN3	MCOLN3|p.N456Mfs*18|1|0.3|ENSG00000055732|chr1:85021230-85021230|T/-|frameshift_variant	MCOLN3|p.N456Mfs*18|1|0.3|ENSG00000055732|chr1:85021230-85021230|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.3060607910156	2	510.30547	1018.59639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.94	1	112.94	112.44	113.44	0								0	0	0	0.38004	1	29342	29342		0.69038	0	1				57313	12523	32788	32789	70299	70299					0.08783244927803935
WLGVIRYL	8	Unmodified	_WLGVIRYL_					0	0	0		MCOLN3|p.N456Mfs*18|1|0.3|ENSG00000055732|chr1:85021230-85021230|T/-|frameshift_variant;nc|ENSG00000055732|Q8TDD5-2|MCOLN3;ENSG00000055732|ENST00000370589|MCOLN3	MCOLN3|p.N456Mfs*18|1|0.3|ENSG00000055732|chr1:85021230-85021230|T/-|frameshift_variant	MCOLN3|p.N456Mfs*18|1|0.3|ENSG00000055732|chr1:85021230-85021230|T/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.3060607910156	2	510.30547	1018.59639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.13	1	112.15	111.65	112.65	0.0131								0	0	0	0.38004	1	29190	29190		0.69038	0	1				57314	12523	32788	32789	70300	70300					0.08783244927803935
WLHLAQGSF	9	Unmodified	_WLHLAQGSF_					0	0	0		nc|ENSG00000253771|Q5T6R2|TPTE2P1	nc|ENSG00000253771|Q5T6R2|TPTE2P1	nc|ENSG00000253771|Q5T6R2|TPTE2P1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.761474609375	2	529.774534	1057.53451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.511	1	42.511	42.011	43.011	0								0	0	0	0.20238	1	9259	9259		21.747	3.6117	1				57315	12979	32789	32790	70301	70301					0.00804893508643545
WLHPFRPLL	9	Unmodified	_WLHPFRPLL_					0	0	0		ENST00000300853.7_1_19:45912063-45912522:-|nuORF	ENST00000300853.7_1_19:45912063-45912522:-|nuORF	ENST00000300853.7_1_19:45912063-45912522:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.8457641601562	2	589.845294	1177.67603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.6	1	117.57	117.07	118.07	-0.024147								0	0	0	0.26704	1	30431	30431		0.6015	0.076735	1				57316	9220	32790	32791	70302	70302					0.09430311601795438
WLHQLHWEH	9	Unmodified	_WLHQLHWEH_					0	0	0			REV__ENST00000407714.1_1_2:241564763-241570253:+|nuORF	REV__ENST00000407714.1_1_2:241564763-241570253:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	643.3138427734375	2	643.314889	1284.61522	0.32323	0.00020794	-1.193	-0.00076748	-0.86978	-0.00055954	643.3141093332762	22.005	0.48893	21.956	21.745	22.234	-0.049377					28	17	2	0	0	0	0.35563	1	3065	3065		0.52476	0.066424	1	118460	+		57317	20746	32791	32792	70303	70303					-0.01569825448427764
WLHVSVKCM	9	Unmodified	_WLHVSVKCM_					0	0	0			REV__nc|ENSG00000141750|Q6ZMT1-2|STAC2	REV__nc|ENSG00000141750|Q6ZMT1-2|STAC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.3038940429688	2	551.780447	1101.54634	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.784	1	20.674	20.174	21.174	-0.11003								0	0	0	0.264	1	2645	2645		1.8442	0.36234	1		+		57318	16093	32792	32793	70304	70304					-0.000369490639968717
WLIHKTTKLHF	11	Unmodified	_WLIHKTTKLHF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.2784423828125	3	475.278473	1422.81359	0.51455	0.00024456	-0.42298	-0.00020103	0.091576	4.3524E-05	475.2781617466958	55.072	1.1242	55.14	54.727	55.851	0.067966					136	41	4	0	0	0	0.46554	1	13154	13154		2.6312	1.4164	1	2548900			57319	2597	32793	32794	70305	70305					0.11909595410543261
WLIHKTTKLHF	11	Unmodified	_WLIHKTTKLHF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.2785339355469	3	475.278473	1422.81359	0.37866	0.00017997	-0.27532	-0.00013085	0.10335	4.9119E-05	475.2782316305637	55.317	1.1796	55.298	54.869	56.048	-0.019081					135	43	4	0	0	0	0.46842	1	13219	13219		2.2527	0.66045	1	2767500			57320	2597	32793	32794	70306	70306					0.11909595410543261
WLIMQKLFV	9	Unmodified	_WLIMQKLFV_					0	0	0			REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3431396484375	2	589.343738	1176.67292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.23	1	116.23	115.73	116.73	0								0	0	0	0.2672	1	30096	30096		0.52476	0	1		+		57321	22378	32794	32795	70307	70307					0.0916530043275543
WLIMQKLFV	9	Unmodified	_WLIMQKLFV_					0	0	0			REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3429565429688	2	589.343738	1176.67292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.36	1	116.36	115.86	116.86	0								0	0	0	0.2672	1	30129	30129		0.52476	0	1		+		57322	22378	32794	32795	70308	70308					0.0916530043275543
WLIMQKLFV	9	Unmodified	_WLIMQKLFV_					0	0	0			REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3422241210938	2	589.343738	1176.67292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.09	1	117.09	116.59	117.59	0								0	0	0	0.2672	1	30294	30294		0.52476	0	1		+		57323	22378	32794	32795	70309	70309					0.0916530043275543
WLIMQKLFV	9	Unmodified	_WLIMQKLFV_					0	0	0			REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.343017578125	2	589.343738	1176.67292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.47	1	117.47	116.97	117.97	0								0	0	0	0.2672	1	30380	30380		0.52476	0	1		+		57324	22378	32794	32795	70310	70310					0.0916530043275543
WLIMQKLFV	9	Unmodified	_WLIMQKLFV_					0	0	0			REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3423461914062	2	589.343738	1176.67292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.98	1	115.96	115.46	116.46	-0.020988								0	0	0	0.2672	1	30060	30060		0.52476	0	1		+		57325	22378	32794	32795	70311	70311					0.0916530043275543
WLIMQKLFV	9	Unmodified	_WLIMQKLFV_					0	0	0			REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3432006835938	2	589.343738	1176.67292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.25	1	116.22	115.72	116.72	-0.022781								0	0	0	0.2672	1	30118	30118		0.52476	0	1		+		57326	22378	32794	32795	70312	70312					0.0916530043275543
WLIMQKLFV	9	Unmodified	_WLIMQKLFV_					0	0	0			REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3433227539062	2	589.343738	1176.67292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.81	1	119.78	119.28	120.28	-0.024361								0	0	0	0.2672	1	30916	30916		0.52476	0	1		+		57327	22378	32794	32795	70313	70313					0.0916530043275543
WLIMQKLFV	9	Unmodified	_WLIMQKLFV_					0	0	0			REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3431396484375	2	589.343738	1176.67292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.19	1	119.22	118.72	119.72	0.026253								0	0	0	0.2672	1	30840	30840		0.52476	0	1		+		57328	22378	32794	32795	70314	70314					0.0916530043275543
WLIMQKLFV	9	Unmodified	_WLIMQKLFV_					0	0	0			REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	REV__ENST00000567229.5_1_15:66793594-66793627:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3428344726562	2	589.343738	1176.67292	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.56	1	119.59	119.09	120.09	0.027756								0	0	0	0.2672	1	30919	30919		0.52476	0	1		+		57329	22378	32794	32795	70315	70315					0.0916530043275543
WLIPCLVL	8	Unmodified	_WLIPCLVL_					0	0	0		ENST00000422839.5_2_22:31476543-31476630:+|nuORF	ENST00000422839.5_2_22:31476543-31476630:+|nuORF	ENST00000422839.5_2_22:31476543-31476630:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.79461669921875	2	478.785524	955.556496	0.41781	0.00020004	-1.3163	-0.00063025	-0.89854	-0.00043021	478.784979843106	83.455	0.63612	83.532	83.214	83.85	0.077095					32	24	2	0	0	0	0.3439	1	21729	21729		2.8892	0	1	67409			57330	10383	32795	32796	70316	70316					0.07693981932845873
WLKKVHLIM	9	Unmodified	_WLKKVHLIM_					0	0	0			REV__ENST00000517513.5_1_4:185553430-185553481:-|nuORF	REV__ENST00000517513.5_1_4:185553430-185553481:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3740844726562	2	584.357179	1166.69981	0.28153	0.00016452	-0.68666	-0.00040125	-0.40512	-0.00023674	584.3566622976628	99.729	0.31148	99.722	99.556	99.867	-0.0069046					64	41	2	0	0	0	0.34681	1	26690	26690		1.8442	0.19162	1	104910	+		57331	21852	32796	32797	70317	70317					0.12312409043966
WLLASAAWEA	10	Unmodified	_WLLASAAWEA_					0	0	0		ENST00000602529.1_1_1:228462405-228463137:-|nuORF	ENST00000602529.1_1_1:228462405-228463137:-|nuORF	ENST00000602529.1_1_1:228462405-228463137:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2868041992188	2	559.287474	1116.5604	-0.087927	-4.9177E-05	-1.2297	-0.00068773	-1.3176	-0.00073691	559.2866892713132	14.141	0.64899	14.075	13.861	14.51	-0.066068					29	22	2	0	0	0	0.40992	1	685	685		1.6526	0.17072	1	185150			57332	12267	32797	32798	70318	70318					0.006777429603062046
WLLLKRYSKLN	11	Unmodified	_WLLLKRYSKLN_					0	0	0			REV__ENST00000598497.1_1_19:58598201-58598612:-|nuORF	REV__ENST00000598497.1_1_19:58598201-58598612:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.2818603515625	3	478.625761	1432.85546	0.31534	0.00015093	-0.37623	-0.00018007	-0.060891	-2.9144E-05	478.6255220883634	30.221	0.90902	30.249	29.701	30.61	0.027946					69	31	3	0	0	0	0.3331	1	5513	5513		2.2527	1.0379	1	292760	+		57333	22619	32798	32799	70319	70319					0.15634151099061455
WLLRSSALVLP	11	Unmodified	_WLLRSSALVLP_					0	0	0		ENST00000359359.6_3_6:36891854-36892064:+|nuORF	ENST00000359359.6_3_6:36891854-36892064:+|nuORF	ENST00000359359.6_3_6:36891854-36892064:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.3829956054688	2	627.882073	1253.74959	-0.034981	-2.1964E-05	2.8119	0.0017656	2.777	0.0017436	627.8841587946476	103.45	0.13143	103.45	103.42	103.55	0					28	19	2	0	0	0	0.32996	1	27506	27506		8.1555	3.2585	1	12544000			57334	9663	32799	32800	70320	70320					0.132868152536048
WLLSAIVT	8	Unmodified	_WLLSAIVT_					0	0	0			REV__ENST00000289575.9_1_11:74862224-74862383:+|nuORF	REV__ENST00000289575.9_1_11:74862224-74862383:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.76361083984375	2	451.770929	901.527304	0.36275	0.00016388	-0.098265	-4.4393E-05	0.26449	0.00011949	451.77077900136135	86.587	0.37152	86.587	86.485	86.857	0					24	14	2	0	0	0	0.058048	1	22867	22867		74.396	7.361	1	115930	+		57335	19747	32800	32801	70321	70321					0.07260160908231228
WLLSAIVT	8	Unmodified	_WLLSAIVT_					0	0	0			REV__ENST00000289575.9_1_11:74862224-74862383:+|nuORF	REV__ENST00000289575.9_1_11:74862224-74862383:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7634582519531	2	451.770929	901.527304	0.3536	0.00015975	0.23123	0.00010446	0.58484	0.00026421	451.7705857973117	87.144	0.10289	87.144	87.067	87.17	0					5	3	2	0	0	0	0.13961	1	22966	22966		53.576	0	1	35142	+		57336	19747	32800	32801	70322	70322					0.07260160908231228
WLLSSNVYR	9	Unmodified	_WLLSSNVYR_					0	0	0		ENSG00000184350|ENST00000389832|MRGPRE	ENSG00000184350|ENST00000389832|MRGPRE	ENSG00000184350|ENST00000389832|MRGPRE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8070068359375	2	569.306198	1136.59784	0.020635	1.1747E-05	-3.4579	-0.0019686	-3.4372	-0.0019568	569.8072175499783	13.32	0.35153	13.22	13.011	13.362	-0.099291					30	11	4	0	0	0	0.26188	1	330	330		1.6526	0	1	83342			57337	7447	32801	32802	70323	70323					0.035008342259061465
WLLSSNVYR	9	Unmodified	_WLLSSNVYR_					0	0	0		ENSG00000184350|ENST00000389832|MRGPRE	ENSG00000184350|ENST00000389832|MRGPRE	ENSG00000184350|ENST00000389832|MRGPRE	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	569.306198	1136.59784	-0.14836	-8.4465E-05	-11.644	-0.0066293	-11.793	-0.0067137	569.2985322795804	13.261	0.5097	13.193	12.878	13.388	-0.067496	-0.0094605	-0.0042657	NaN	1.6526	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44337			57338	7447	32801	32802							0.035008342259061465
WLLTQPSP	8	Unmodified	_WLLTQPSP_					0	0	0			REV__ENST00000609436.1_1_10:65225198-65225663:+|nuORF	REV__ENST00000609436.1_1_10:65225198-65225663:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2507019042969	2	471.258185	940.501818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.5	1	69.5	69	70	0								0	0	0	0.33122	1	17566	17566		23.148	1.4018	1		+		57339	22670	32802	32803	70324	70324					0.029186863858058132
WLMAQSLIN	9	Unmodified	_WLMAQSLIN_					0	0	0			REV__ENST00000530793.5_1_11:111248533-111249995:-|nuORF	REV__ENST00000530793.5_1_11:111248533-111249995:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.294921875	2	538.283877	1074.5532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.231	1	93.23	92.73	93.73	-0.00051117								0	0	0	0.21009	1	24821	24821		19.257	1.1106	1		+		57340	21963	32803	32804	70325	70325					0.01890687088211962
WLMEDTHSEF	10	Unmodified	_WLMEDTHSEF_					0	0	0			REV__nc|ENSG00000140798|Q96J65|ABCC12	REV__nc|ENSG00000140798|Q96J65|ABCC12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.88525390625	3	432.185139	1293.53359	-0.34624	-0.00014964	0.39855	0.00017225	0.052312	2.2608E-05	432.18537854521776	30.445	0.4489	30.472	30.22	30.669	0.027157					22	15	2	0	0	0	0.32167	1	5570	5570		0.62683	0.063655	1	78688	+		57341	16051	32804	32805	70326	70326					-0.10143733713198344
WLMEDTHSEF	10	Unmodified	_WLMEDTHSEF_					0	0	0			REV__nc|ENSG00000140798|Q96J65|ABCC12	REV__nc|ENSG00000140798|Q96J65|ABCC12	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	432.185139	1293.53359	0.030709	1.3272E-05	-0.31533	-0.00013628	-0.28462	-0.00012301	432.184981996498	30.408	0.50299	30.436	30.218	30.721	0.027946	-0.017812	-0.00042189	NaN	1.7423	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81141	+		57342	16051	32804	32805							-0.10143733713198344
WLMIVESV	8	Unmodified	_WLMIVESV_					0	0	0			REV__ENST00000276390.6_1_8:20078200-20078296:+|nuORF	REV__ENST00000276390.6_1_8:20078200-20078296:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2742004394531	2	488.762246	975.50994	0.055788	2.7267E-05	-2.7855	-0.0013614	-2.7297	-0.0013342	488.76058332470257	31.367	0.39117	31.409	31.209	31.6	0.042364					15	13	2	0	0	0	0.34046	1	5793	5793		14.582	0	1	109290	+		57343	19694	32805	32806	70327	70327					0.021204973109433922
WLMWRRWL	8	Unmodified	_WLMWRRWL_					0	0	0			REV__ENST00000549488.5_1_12:53693918-53699773:+|nuORF	REV__ENST00000549488.5_1_12:53693918-53699773:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.3065795898438	2	623.836946	1245.65934	0.1502	9.3702E-05	1.8917	0.0011801	2.0419	0.0012738	623.838215035797	16.529	0.2882	16.466	16.298	16.586	-0.062532					15	9	2	0	0	0	0.34441	1	1322	1322		0	0	1	20876	+		57344	22197	32806	32807	70328	70328					0.04633487444198181
WLMWRRWL	8	Unmodified	_WLMWRRWL_					0	0	0			REV__ENST00000549488.5_1_12:53693918-53699773:+|nuORF	REV__ENST00000549488.5_1_12:53693918-53699773:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	623.836946	1245.65934	0.22305	0.00013915	1.9751	0.0012321	2.1982	0.0013713	623.8379981012677	16.571	0.28207	16.571	16.377	16.659	0	0.021815	-4.9202E-05	NaN	0	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33069	+		57345	22197	32806	32807							0.04633487444198181
WLMWRRWL	8	Unmodified	_WLMWRRWL_					0	0	0			REV__ENST00000549488.5_1_12:53693918-53699773:+|nuORF	REV__ENST00000549488.5_1_12:53693918-53699773:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	623.836946	1245.65934	-0.1442	-8.9959E-05	2.2616	0.0014109	2.1174	0.0013209	624.3397903137295	16.724	0.30581	16.61	16.362	16.667	-0.11434	0.060701	0.00030824	NaN	0	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28300	+		57346	22197	32806	32807							0.04633487444198181
WLPAMLAV	8	Unmodified	_WLPAMLAV_					0	0	0		ENSG00000157399|ENST00000381134|ARSL;chrX:2943199-2953143|515|16.53|0.71|4.54|-|ENST00000672606|ARSL,ARSL	ENSG00000157399|ENST00000381134|ARSL	ENSG00000157399|ENST00000381134|ARSL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.75408935546875	2	450.754224	899.493896	0.41623	0.00018762	-0.14581	-6.5724E-05	0.27043	0.0001219	450.75375001304667	84.207	0.49564	84.19	83.915	84.411	-0.016823					32	21	2	0	0	0	0.45851	1	22095	22095		2.8892	2.8892	1	215900			57347	5303	32807	32808	70329	70329					0.040128358646711604
WLPEGVKLF	9	Unmodified	_WLPEGVKLF_					0	0	0			REV__nc|ENSG00000122025|P36888-2|FLT3	REV__nc|ENSG00000122025|P36888-2|FLT3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.8246459960938	2	544.810585	1087.60662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.406	1	88.403	87.903	88.903	-0.0028381								0	0	0	0.23367	1	23339	23339		11.64	2.8949	1		+		57348	15144	32808	32809	70330	70330					0.06631807862368078
WLPELFAEAF	10	Unmodified	_WLPELFAEAF_					0	0	0			REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	REV__ENST00000427965.6_1_16:29086353-29124388:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.5534362792969	3	408.209613	1221.60701	-0.25182	-0.0001028	2.0634	0.00084231	1.8116	0.00073951	408.20956292001813	31.305	0.41685	31.305	31.033	31.45	0					27	14	3	0	0	0	0.3156	1	5858	5858		6.1918	0	1	89105	+		57349	20914	32809	32810	70331	70331					0.005071827915571703
WLPRCGISPVL	11	Unmodified	_WLPRCGISPVL_					0	0	0		ENST00000604306.1_1_14:24700865-24700994:-|nuORF	ENST00000604306.1_1_14:24700865-24700994:-|nuORF	ENST00000604306.1_1_14:24700865-24700994:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.2738647460938	2	620.847176	1239.6798	-0.012385	-7.6893E-06	1.4659	0.00091009	1.4535	0.0009024	620.8476310954019	46.354	0.24723	46.408	46.355	46.602	0.054375					15	8	2	0	0	0	0.28652	1	10433	10433		29.841	7.1043	1	180620			57350	12279	32810	32811	70332	70332					0.06954613313337177
WLPRRSNSPL	10	Unmodified	_WLPRRSNSPL_					0	0	0			REV__ENST00000360890.6_3_10:49928128-49929377:+|nuORF	REV__ENST00000360890.6_3_10:49928128-49929377:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.88775634765625	3	409.231523	1224.67274	-0.1486	-6.0812E-05	0.40067	0.00016397	0.25207	0.00010316	409.2306788515487	22.304	0.28421	22.255	22.09	22.375	-0.049376					11	9	2	0	0	0	0.32033	1	3121	3121		4.1895	1.1943	1	34876	+		57351	20270	32811	32812	70333	70333					0.06939016757132777
WLPRSSVGVF	10	Unmodified	_WLPRSSVGVF_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.3164672851562	2	574.316566	1146.61858	0.35492	0.00020384	-0.56176	-0.00032263	-0.20684	-0.00011879	574.3160669978704	50.165	0.56513	50.165	49.953	50.518	0					49	20	3	0	0	0	0.11961	1	11638	11638		43.772	17.504	1	667540	+		57352	14131	32812	32813	70334	70334					0.051134246055880794
WLPRSSVGVF	10	Unmodified	_WLPRSSVGVF_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.3161010742188	2	574.316566	1146.61858	0.71695	0.00041176	-0.66872	-0.00038406	0.048234	2.7702E-05	574.3158857484459	50.161	0.5629	50.182	49.989	50.552	0.020691					49	20	3	0	0	0	0.19885	1	11620	11620		32.786	3.7041	1	653090	+		57353	14131	32812	32813	70335	70335					0.051134246055880794
WLPRSSVGVF	10	Unmodified	_WLPRSSVGVF_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	574.316566	1146.61858	0.35492	0.00020384	-0.56176	-0.00032263	-0.20684	-0.00011879	574.3160669978704	50.165	0.56513	50.165	49.953	50.518	0	-0.014436	0.0001536	NaN	43.772	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	667540	+		57354	14131	32812	32813							0.051134246055880794
WLPRSSVGVF	10	Unmodified	_WLPRSSVGVF_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	574.316566	1146.61858	0.71695	0.00041176	-0.66872	-0.00038406	0.048234	2.7702E-05	574.3158857484459	50.161	0.5629	50.182	49.989	50.552	0.020691	0.0027385	3.0744E-05	NaN	43.772	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	653090	+		57355	14131	32812	32813							0.051134246055880794
WLQEPGQRH	9	Unmodified	_WLQEPGQRH_					0	0	0		ENST00000502854.5_1_5:176831288-176831426:-|nuORF	ENST00000502854.5_1_5:176831288-176831426:-|nuORF	ENST00000502854.5_1_5:176831288-176831426:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3519287109375	2	575.791247	1149.56794	0.29612	0.0001705	0.20711	0.00011925	0.50323	0.00028976	576.2921252151532	90.065	0.94078	90.065	89.392	90.332	0					115	74	2	0	0	0	0.25706	1	23838	23838		6.7232	1.4263	1	334060			57356	11283	32813	32814	70336	70336					-0.0008610471943484299
WLQEPGQRH	9	Unmodified	_WLQEPGQRH_					0	0	0		ENST00000502854.5_1_5:176831288-176831426:-|nuORF	ENST00000502854.5_1_5:176831288-176831426:-|nuORF	ENST00000502854.5_1_5:176831288-176831426:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	575.791247	1149.56794	0.39686	0.00022851	0.29658	0.00017077	0.69344	0.00039928	576.2921571493293	89.97	1.5731	90.06	89.322	90.895	0.090668	-0.0025078	3.6749E-05	NaN	6.7232	201	119	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215390			57357	11283	32813	32814							-0.0008610471943484299
WLQVKKAF	8	Unmodified	_WLQVKKAF_					0	0	0		ENST00000546531.5_1_12:49396684-49399341:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	ENST00000546531.5_1_12:49396684-49399341:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.3059387207031	2	510.30547	1018.59639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.05	1	112.06	111.56	112.56	0.0131								0	0	0	0.38004	1	29170	29170		0.69038	0	1				57358	11762	32814	32815	70337	70337					0.08783244927803935
WLRASFNHLS	10	Unmodified	_WLRASFNHLS_					0	0	0			REV__nc|ENSG00000180822|Q5JS54-3|PSMG4	REV__nc|ENSG00000180822|Q5JS54-3|PSMG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.8840026855469	3	410.884123	1229.63054	-0.058869	-2.4188E-05	-0.01351	-5.551E-06	-0.072379	-2.9739E-05	410.8840070856384	15.61	1.0411	15.5	15.038	16.079	-0.10981					101	35	4	0	0	0	0.32068	1	1113	1113		3.5871	0.5148	1	143300	+		57359	18120	32815	32816	70338	70338					0.024910413487532423
WLRGKRRK	8	Unmodified	_WLRGKRRK_					0	0	0		ENSG00000162522|ENST00000401073|KIAA1522	ENSG00000162522|ENST00000401073|KIAA1522	ENSG00000162522|ENST00000401073|KIAA1522	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.8323364257812	2	550.351609	1098.68866	0.10019	5.5138E-05	-1.1165	-0.00061446	-1.0163	-0.00055932	550.3511125451969	13.432	0.22681	13.332	13.189	13.416	-0.099291					10	7	2	0	0	0	0.34437	1	389	389		0.69038	0	1	37366			57360	5578	32816	32817	70339	70339					0.14326767784700678
WLRGKRRK	8	Unmodified	_WLRGKRRK_					0	0	0		ENSG00000162522|ENST00000401073|KIAA1522	ENSG00000162522|ENST00000401073|KIAA1522	ENSG00000162522|ENST00000401073|KIAA1522	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	550.351609	1098.68866	0.057481	3.1635E-05	-1.0803	-0.00059455	-1.0228	-0.00056291	550.3512354272506	13.401	0.1749	13.401	13.309	13.484	0	0.024416	0.0001637	NaN	0.69038	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30705			57361	5578	32816	32817							0.14326767784700678
WLRGKRRK	8	Unmodified	_WLRGKRRK_					0	0	0		ENSG00000162522|ENST00000401073|KIAA1522	ENSG00000162522|ENST00000401073|KIAA1522	ENSG00000162522|ENST00000401073|KIAA1522	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	550.351609	1098.68866	0.034409	1.8937E-05	-1.6295	-0.00089678	-1.5951	-0.00087785	550.350998615314	13.464	0.1653	13.396	13.302	13.468	-0.067496	0.019806	-0.00044078	NaN	0.69038	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31773			57362	5578	32816	32817							0.14326767784700678
WLRNYQNP	8	Unmodified	_WLRNYQNP_					0	0	0		ENSG00000227729|ENST00000557640|RD3L	ENSG00000227729|ENST00000557640|RD3L	ENSG00000227729|ENST00000557640|RD3L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.7755126953125	2	545.775065	1089.53558	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.402	1	17.341	16.841	17.841	-0.060429								0	0	0	0.38004	1	1618	1618		0.69038	0	1				57363	8458	32817	32818	70340	70340					-0.005608921224165897
WLRRRLRGCRA	11	Unmodified	_WLRRRLRGCRA_					0	0	0			REV__ENSG00000124134|ENST00000537075|KCNS1	REV__ENSG00000124134|ENST00000537075|KCNS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2834777832031	3	481.617717	1441.83132	0.43009	0.00020714	0.069128	3.3293E-05	0.49922	0.00024043	481.6177455128119	92.384	0.48584	92.385	92.192	92.678	0.00046539					68	34	2	0	0	0	0.33303	1	24581	24581		2.4348	2.4348	1	1233100	+		57364	15209	32818	32819	70341	70341					0.1280803218442088
WLRSHTRRD	9	Unmodified	_WLRSHTRRD_					0	0	0			REV__ENST00000435059.6_1_17:47781460-47783244:-|nuORF	REV__ENST00000435059.6_1_17:47781460-47783244:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.210693359375	3	409.554889	1225.64284	-0.10444	-4.2775E-05	1.6913	0.0006927	1.5869	0.00064992	409.55571461488597	17.895	0.52297	17.777	17.515	18.038	-0.11739					38	17	3	0	0	0	0.2603	1	1848	1848		4.1895	0.86986	1	146610	+		57365	20990	32819	32820	70342	70342					0.039040778117851005
WLRTGAGSL	9	Unmodified	_WLRTGAGSL_					0	0	0			REV__ENST00000216733.7_1_14:23826097-23826370:-|nuORF	REV__ENST00000216733.7_1_14:23826097-23826370:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7585144042969	2	480.766709	959.518865	0.35133	0.00016891	0.87816	0.00042219	1.2295	0.0005911	480.7669970172528	29.344	1.7006	29.344	28.333	30.034	0					145	60	4	0	0	0	0.15219	1	5362	5362		30.637	6.616	1	1143700	+		57366	19414	32820	32821	70343	70343					0.03748606991609904
WLSLQHRGQ	9	Unmodified	_WLSLQHRGQ_					0	0	0		ENST00000517804.5_1_8:21914606-21927027:+|nuORF;ENST00000415253.5_1_8:21916870-21927027:+|nuORF	ENST00000517804.5_1_8:21914606-21927027:+|nuORF	ENST00000517804.5_1_8:21914606-21927027:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8211059570312	2	562.801614	1123.58868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.222	1	58.222	57.722	58.722	0								0	0	0	0.21353	1	14102	14102		18.146	0	1				57367	10307	32821	32822	70344	70344					0.0318248566022703
WLSSHPATL	9	Unmodified	_WLSSHPATL_					0	0	0		ENST00000433619.2_1_X:153740652-153741217:-|nuORF;ENST00000416319.5_1_X:153737099-153744245:-|nuORF;ENST00000359889.9_1_X:153736882-153744245:-|nuORF;ENST00000369643.5_1_X:153736882-153744328:-|nuORF	ENST00000433619.2_1_X:153740652-153741217:-|nuORF	ENST00000433619.2_1_X:153740652-153741217:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.3029479980469	2	506.266542	1010.51853	0.52163	0.00026408	-0.57875	-0.000293	-0.057118	-2.8917E-05	506.266420497887	40.492	0.63616	40.492	40.132	40.768	0					36	22	2	0	0	0	0.22061	1	8664	8664		24.021	11.489	1	199090			57368	9669	32822	32823	70345	70345					0.01369187271757255
WLSWFTQK	8	Unmodified	_WLSWFTQK_					0	0	0		ENST00000368072.9_1_1:160247840-160247981:-|nuORF	ENST00000368072.9_1_1:160247840-160247981:-|nuORF	ENST00000368072.9_1_1:160247840-160247981:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.2838134765625	2	548.284734	1094.55492	0.32476	0.00017806	-0.61393	-0.00033661	-0.28916	-0.00015854	548.2842840326351	22.143	0.89284	22.143	21.87	22.763	0					39	31	2	0	0	0	0.41097	1	3069	3069		18.135	5.0925	1	96394			57369	9750	32823	32824	70346	70346					0.01142064168448087
WLSWFTQK	8	Unmodified	_WLSWFTQK_					0	0	0		ENST00000368072.9_1_1:160247840-160247981:-|nuORF	ENST00000368072.9_1_1:160247840-160247981:-|nuORF	ENST00000368072.9_1_1:160247840-160247981:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.2849731445312	2	548.284734	1094.55492	0.31081	0.00017041	-0.5663	-0.00031049	-0.25548	-0.00014008	548.2844799720821	22.134	0.73938	22.085	21.905	22.645	-0.049377					49	25	3	0	0	0	0.41097	1	3076	3076		18.135	1.0221	1	126640			57370	9750	32823	32824	70347	70347					0.01142064168448087
WLSWQSGLNSL	11	Unmodified	_WLSWQSGLNSL_					0	0	0			REV__nc|ENSG00000111319|P37088-2|SCNN1A	REV__nc|ENSG00000111319|P37088-2|SCNN1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.8878479003906	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.898	1	38.997	38.497	39.497	0.099407								0	0	0	0.36137	1	8146	8146		2.6312	0	1		+		57371	22939	32824	32825	70348	70348					0.007201845635108839
WLTAQVATK	9	Unmodified	_WLTAQVATK_					0	0	0		ENST00000459937.5_1_7:134779328-134853674:-|nuORF;nc|ENSG00000122783|Q9BWK5-4|CYREN;ENST00000487774.1_1_7:134853419-134853674:-|nuORF;ENSG00000122783|ENST00000393114|CYREN	ENST00000459937.5_1_7:134779328-134853674:-|nuORF	ENST00000459937.5_1_7:134779328-134853674:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.3004150390625	2	509.290017	1016.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.202	1	20.202	19.702	20.702	0								0	0	0	0.171	1	2466	2466		29.841	9.387	1				57372	3070	32825	32826	70349	70349					0.057860468229023354
WLTFVESSF	9	Unmodified	_WLTFVESSF_					0	0	0			REV__nc|ENSG00000151718|Q6AWC2-3|WWC2	REV__nc|ENSG00000151718|Q6AWC2-3|WWC2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.275634765625	2	558.274032	1114.53351	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.385	1	71.446	70.946	71.946	0.060783								0	0	0	0.16039	1	18135	18135		32.305	0.26801	1		+		57373	16553	32826	32827	70350	70350					-0.019173656509110515
WLTKKYLIRWL	11	Unmodified	_WLTKKYLIRWL_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.3100280761719	3	507.309773	1518.90749	0.13199	6.6961E-05	0.18539	9.405E-05	0.31738	0.00016101	507.30971754654917	95.028	2.2422	95.028	94.003	96.245	0					500	210	4	0	0	0	0.48212	1	25328	25328		0.45452	0	1	1050700	+		57374	18751	32827	32828	70351	70351					0.16879314512834753
WLTKKYLIRWL	11	Unmodified	_WLTKKYLIRWL_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7788391113281	3	507.309773	1518.90749	0.26286	0.00013335	0.047407	2.405E-05	0.31027	0.0001574	507.6443229102167	92.395	0.56765	92.395	92.073	92.641	0					111	44	3	0	0	0	0.33352	1	24556	24556		0.08335	0.08335	1	315880	+		57375	18751	32827	32828	70352	70352					0.16879314512834753
WLTKKYLIRWL	11	Unmodified	_WLTKKYLIRWL_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	507.3099060058594	3	507.309773	1518.90749	0.3679	0.00018664	0.13064	6.6274E-05	0.49853	0.00025291	507.30970424954614	94.893	2.6382	94.891	94.003	96.641	-0.0020065					854	241	5	0	0	0	0.48212	1	25344	25344		0.45452	0.087843	1	2770600	+		57376	18751	32827	32828	70353	70353					0.16879314512834753
WLTKRGVI	8	Unmodified	_WLTKRGVI_					0	0	0			REV__ENST00000548263.5_1_12:54105730-54106093:-|nuORF	REV__ENST00000548263.5_1_12:54105730-54106093:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.79022216796875	2	486.803094	971.591636	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.895	1	46.895	46.395	47.395	0								0	0	0	0.32762	1	10605	10605		24.674	0	1		+		57377	22186	32828	32829	70354	70354					0.10470360785029698
WLTLIVNI	8	Unmodified	_WLTLIVNI_					0	0	0			REV__nc|ENSG00000116785|Q02985-2|CFHR3	REV__nc|ENSG00000116785|Q02985-2|CFHR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.80035400390625	2	486.299853	970.585153	0.39666	0.0001929	3.3944	0.0016507	3.7911	0.0018436	486.3014015028515	88.409	0.26868	88.409	88.259	88.527	0					26	16	2	0	0	0	0.34353	1	23344	23344		4.756	0	1	67453	+		57378	14939	32829	32830	70355	70355					0.09868422833653767
WLTWLLKAF	9	Unmodified	_WLTWLLKAF_					0	0	0		nc|ENSG00000221818|Q9HAK2-2|EBF2	nc|ENSG00000221818|Q9HAK2-2|EBF2	nc|ENSG00000221818|Q9HAK2-2|EBF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3419799804688	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.56	1	114.56	114.06	115.06	0								0	0	0	0.2672	1	29718	29718		0.52476	0.066424	1				57379	12949	32830	32831	70356	70356					0.08828373650408139
WLVDLLNKF	9	Unmodified	_WLVDLLNKF_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.7254028320312	2	574.329142	1146.64373	0.33446	0.00019209	-2.311	-0.0013273	-1.9766	-0.0011352	574.3271651671756	49.694	0.23555	49.739	49.669	49.905	0.044891					11	8	2	0	0	0	0.25066	1	11480	11480		7.2892	0	1	111300			57380	3159	32831	32832	70357	70357					0.0762747940814279
WLVFHYLI	8	Unmodified	_WLVFHYLI_					0	0	0		ENST00000370487.4_1_20:61431489-61431786:+|nuORF	ENST00000370487.4_1_20:61431489-61431786:+|nuORF	ENST00000370487.4_1_20:61431489-61431786:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2991943359375	2	545.807845	1089.60114	0.10283	5.6128E-05	1.6899	0.00092233	1.7927	0.00097846	545.8087510934907	12.248	0.10912	12.248	12.194	12.303	0					6	3	2	0	0	0	0.3439	1	54	54		2.8892	0.31174	1	14985			57381	9801	32832	32833	70358	70358					0.05992129070568808
WLVLWPSRVL	10	Unmodified	_WLVLWPSRVL_					0	0	0			REV__ENST00000264039.6_1_2:241407109-241407217:+|nuORF	REV__ENST00000264039.6_1_2:241407109-241407217:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.87841796875	2	634.879333	1267.74411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.83	1	111.82	111.32	112.32	-0.015625								0	0	0	0.38201	1	29092	29092		0.45834	0.057624	1		+		57382	19634	32833	32834	70359	70359					0.1209513646178948
WLVPGEPSL	9	Unmodified	_WLVPGEPSL_					0	0	0			REV__ENST00000453770.1_1_20:1514156-1534896:-|nuORF	REV__ENST00000453770.1_1_20:1514156-1534896:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7908020019531	2	499.271293	996.528032	0.28812	0.00014385	-3.888	-0.0019412	-3.5999	-0.0017973	499.26929315698317	22.267	0.45381	22.167	21.968	22.422	-0.10034					17	16	2	0	0	0	0.25879	1	3099	3099		4.756	1.8668	1	47293	+		57383	21143	32834	32835	70360	70360					0.029629555573023936
WLVQIPTR	8	Unmodified	_WLVQIPTR_					0	0	0			REV__ENST00000536241.1_1_12:6959960-6960418:-|nuORF	REV__ENST00000536241.1_1_12:6959960-6960418:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2737121582031	2	506.800552	1011.58655	0.16396	8.3097E-05	-3.5611	-0.0018048	-3.3971	-0.0017217	506.79909099711966	26.059	0.42059	26.059	25.9	26.321	0					21	14	2	0	0	0	0.34247	1	4301	4301		8.5933	0.68312	1	66503	+		57384	22080	32835	32836	70361	70361					0.08122056922422871
WLVRHFSLLL	10	Unmodified	_WLVRHFSLLL_					0	0	0		OTOP3|p.A285Sfs*15|1|0.13|ENSG00000182938|chr17:74946705-74946706|-/A|frameshift_variant;ENSG00000182938|ENST00000328801|OTOP3;nc|ENSG00000182938|Q7RTS5|OTOP3	OTOP3|p.A285Sfs*15|1|0.13|ENSG00000182938|chr17:74946705-74946706|-/A|frameshift_variant	OTOP3|p.A285Sfs*15|1|0.13|ENSG00000182938|chr17:74946705-74946706|-/A|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3848266601562	2	642.384783	1282.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.197	1	17.137	16.637	17.637	-0.060429								0	0	0	0.38209	1	1556	1556		0	0	1				57385	7335	32836	32837	70362	70362					0.12494538836108404
WLVTTDLFS	9	Unmodified	_WLVTTDLFS_					0	0	0			REV__ENST00000479783.1_1_2:237233333-237240271:-|nuORF	REV__ENST00000479783.1_1_2:237233333-237240271:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2817993164062	2	541.281857	1080.54916	0.33984	0.00018395	-0.19379	-0.00010489	0.14605	7.9055E-05	541.2820109576712	23.303	0.78804	23.216	23.018	23.806	-0.08761					61	27	4	0	0	0	0.34536	1	3361	3361		2.0598	0	1	251050	+		57386	21470	32837	32838	70363	70363					0.012109208661286175
WLWESECA	8	Unmodified	_WLWESECA_					0	0	0		ENSG00000086015|ENST00000361297|MAST2;nc|ENSG00000086015|Q6P0Q8-2|MAST2	ENSG00000086015|ENST00000361297|MAST2	ENSG00000086015|ENST00000361297|MAST2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.231689453125	2	512.21566	1022.41677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.076	1	13.971	13.471	14.471	-0.10466								0	0	0	0.37183	1	618	618		4.756	0.42677	1				57387	1273	32838	32839	70364	70364					-0.093544271423184
WLWWPAAGL	9	Unmodified	_WLWWPAAGL_					0	0	0			REV__ENST00000609803.2_1_12:46120990-46121053:-|nuORF	REV__ENST00000609803.2_1_12:46120990-46121053:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3145751953125	2	550.28982	1098.56509	0.26527	0.00014598	0.93005	0.0005118	1.1953	0.00065777	550.2904031277967	18.37	0.36737	18.252	17.957	18.325	-0.11739					16	12	2	0	0	0	0.26117	1	1863	1863		2.3027	0	1	28911	+		57388	22674	32839	32840	70365	70365					0.01974671893708546
WMCFYMEL	8	Unmodified	_WMCFYMEL_					0	0	0		ENST00000555705.1_1_14:35005347-35005473:-|nuORF	ENST00000555705.1_1_14:35005347-35005473:-|nuORF	ENST00000555705.1_1_14:35005347-35005473:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3165283203125	2	561.726492	1121.43843	0.49042	0.00027548	-0.32939	-0.00018502	0.16103	9.0455E-05	561.7262627805912	36.513	0.61469	36.595	36.331	36.945	0.082355					34	21	2	0	0	0	0.34218	1	7389	7389		9.3474	0	1	179800			57389	11848	32840	32841	70366	70366					-0.11743081709619219
WMEWEERP	8	Unmodified	_WMEWEERP_					0	0	0			REV__ENSG00000072315|ENST00000262839|TRPC5	REV__ENSG00000072315|ENST00000262839|TRPC5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3154296875	2	581.752941	1161.49133	-0.046964	-2.7322E-05	-0.79308	-0.00046137	-0.84004	-0.0004887	581.7525749274142	13.274	0.25384	13.274	13.174	13.427	0					15	8	3	0	0	0	0.34438	1	380	380		0.6015	0	1	52157	+		57390	13759	32841	32842	70367	70367					-0.08295664330944419
WMIYFRQFS	9	Unmodified	_WMIYFRQFS_					0	0	0		ENSG00000163312|ENST00000295488|HELQ	ENSG00000163312|ENST00000295488|HELQ	ENSG00000163312|ENST00000295488|HELQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.8922119140625	3	426.54271	1276.6063	0.085483	3.6462E-05	0.14551	6.2066E-05	0.23099	9.8528E-05	426.5429791785904	21.128	0.39987	21.075	20.861	21.261	-0.05291					19	13	2	0	0	0	0.26186	1	2715	2715		2.086	0	1	51092			57391	5664	32842	32843	70368	70368					-0.02093935129141755
WMLRGNQR	8	Unmodified	_WMLRGNQR_					0	0	0			REV__ENSG00000164366|ENST00000296824|CCDC127	REV__ENSG00000164366|ENST00000296824|CCDC127	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7759399414062	2	530.777085	1059.53962	0.096727	5.134E-05	-0.87155	-0.0004626	-0.77482	-0.00041126	530.7766847058019	14.589	0.66359	14.484	14.131	14.795	-0.10466					37	22	2	0	0	0	0.46022	1	806	806		2.3027	0.65011	1	130640	+		57392	17155	32843	32844	70369	70369					0.012228740996079068
WMRAPALPTPC	11	Unmodified	_WMRAPALPTPC_					0	0	0		ENST00000487017.5_1_3:48602344-48602914:-|nuORF	ENST00000487017.5_1_3:48602344-48602914:-|nuORF	ENST00000487017.5_1_3:48602344-48602914:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.24664306640625	3	414.875583	1241.60492	0.040567	1.683E-05	0.54102	0.00022445	0.58158	0.00024128	414.87564418653136	31.946	0.1377	31.946	31.9	32.038	0					6	4	2	0	0	0	0.33122	1	6052	6052		4.4062	2.8139	1	196390			57393	11111	32844	32845	70370	70370					-0.006218924895620148
WMWWLFSF	8	Unmodified	_WMWWLFSF_					0	0	0		ENST00000554493.1_1_14:68129224-68156947:-|nuORF;ENST00000553582.5_1_14:68129224-68156858:-|nuORF;ENST00000553816.5_1_14:68151682-68162420:-|nuORF;nc|ENSG00000072042|Q8TC12-3|RDH11;nc|ENSG00000072042|Q8TC12-2|RDH11;ENSG00000072042|ENST00000381346|RDH11	ENST00000554493.1_1_14:68129224-68156947:-|nuORF	ENST00000554493.1_1_14:68129224-68156947:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.3057250976562	2	601.778231	1201.54191	0.59421	0.00035758	-0.67189	-0.00040433	-0.077683	-4.6748E-05	601.7783660941997	56.671	0.53873	56.671	56.423	56.962	0					37	19	3	0	0	0	0.33245	1	13579	13579		19.439	0	1	382820			57394	967	32845	32846	70371	70371					-0.050800902152786875
WNAAEPCLT	9	Unmodified	_WNAAEPCLT_					0	0	0		ENST00000264914.8_2_5:78075366-78075570:-|nuORF	ENST00000264914.8_2_5:78075366-78075570:-|nuORF	ENST00000264914.8_2_5:78075366-78075570:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.758056640625	2	502.728935	1003.44332	0.54855	0.00027577	0.6541	0.00032883	1.2026	0.00060461	502.7289949761172	85.24	0.66491	85.24	84.972	85.637	0					41	25	2	0	0	0	0.22061	1	22387	22387		18.146	0	1	226360			57395	9032	32846	32847	70372	70372					-0.058267382509939125
WNAAEPCLT	9	Unmodified	_WNAAEPCLT_					0	0	0		ENST00000264914.8_2_5:78075366-78075570:-|nuORF	ENST00000264914.8_2_5:78075366-78075570:-|nuORF	ENST00000264914.8_2_5:78075366-78075570:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.7579650878906	2	502.728935	1003.44332	0.52072	0.00026178	0.58174	0.00029246	1.1025	0.00055424	502.729035473749	85.199	0.56776	85.28	85.047	85.615	0.080879					38	21	2	0	0	0	0.22061	1	22345	22345		24.021	10.513	1	243580			57396	9032	32846	32847	70373	70373					-0.058267382509939125
WNAAEPCLT	9	Unmodified	_WNAAEPCLT_					0	0	0		ENST00000264914.8_2_5:78075366-78075570:-|nuORF	ENST00000264914.8_2_5:78075366-78075570:-|nuORF	ENST00000264914.8_2_5:78075366-78075570:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.7579040527344	2	502.728935	1003.44332	0.54556	0.00027427	0.52213	0.00026249	1.0677	0.00053676	502.72904107104074	85.282	0.64217	85.269	84.998	85.64	-0.01284					42	23	2	0	0	0	0.24848	1	22367	22367		13.906	6.6168	1	249960			57397	9032	32846	32847	70374	70374					-0.058267382509939125
WNAIFQFR	8	Unmodified	_WNAIFQFR_					0	0	0			REV__ENST00000313368.7_1_5:140699672-140699747:-|nuORF	REV__ENST00000313368.7_1_5:140699672-140699747:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.28125	2	541.282526	1080.5505	0.26272	0.0001422	-1.3639	-0.00073826	-1.1012	-0.00059605	541.282017549524	23.222	0.52169	23.222	23.021	23.542	0					48	17	4	0	0	0	0.46022	1	3352	3352		2.3027	0.24298	1	233250	+		57398	19917	32847	32848	70375	70375					0.013445997455619363
WNCKWICR	8	Unmodified	_WNCKWICR_					0	0	0		ENST00000263409.8_1_5:38481272-38481362:-|nuORF	ENST00000263409.8_1_5:38481272-38481362:-|nuORF	ENST00000263409.8_1_5:38481272-38481362:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.7949829101562	2	554.762589	1107.51063	0.28383	0.00015746	3.5644	0.0019774	3.8482	0.0021348	554.7645709307625	28.953	0.49397	28.953	28.574	29.068	0.00011635					31	16	3	0	0	0	0.34337	1	5008	5008		5.2307	0.47466	1	82614			57399	9008	32848	32849	70376	70376					-0.03882986521011844
WNELRDLC	8	Unmodified	_WNELRDLC_					0	0	0			REV__nc|ENSG00000168610|P40763-3|STAT3	REV__nc|ENSG00000168610|P40763-3|STAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.8160400390625	2	524.747659	1047.48076	0.32257	0.00016927	0.62068	0.0003257	0.94325	0.00049497	524.7476394574217	15.919	0.36808	15.856	15.638	16.006	-0.062534					27	12	3	0	0	0	0.34408	1	1175	1175		2.3027	0	1	41897	+		57400	17469	32849	32850	70377	70377					-0.0410764698535786
WNIFDFVVVIL	11	Unmodified	_WNIFDFVVVIL_					0	0	0		ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A;SCN1A|p.A1622Pfs*3|1|0.23|ENSG00000144285|chr2:165992415-165992415|A/-|frameshift_variant;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A	ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2748718261719	3	455.591946	1363.75401	0.087592	3.9906E-05	0.22171	0.00010101	0.3093	0.00014092	455.59223976871385	27.029	0.47693	27.007	26.681	27.158	-0.021412					41	16	3	0	0	0	0.33287	1	4566	4566		2.8433	0	1	78984			57401	7910;5071;377;7417;4573	32850	32851	70378	70378					0.08668279676521706
WNIFDFVVVIL	11	Unmodified	_WNIFDFVVVIL_					0	0	0		ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A;SCN1A|p.A1622Pfs*3|1|0.23|ENSG00000144285|chr2:165992415-165992415|A/-|frameshift_variant;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A	ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	455.591946	1363.75401	0.17609	8.0224E-05	0.44451	0.00020252	0.6206	0.00028274	455.5923902542619	27.102	0.75292	27.09	26.513	27.266	-0.011562	0.09684	0.00021318	NaN	2.8433	53	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97246			57402	7910;5071;377;7417;4573	32850	32851							0.08668279676521706
WNILRKIF	8	Unmodified	_WNILRKIF_					0	0	0		ENST00000609175.1_1_13:53261778-53261967:+|nuORF	ENST00000609175.1_1_13:53261778-53261967:+|nuORF	ENST00000609175.1_1_13:53261778-53261967:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3302001953125	2	545.332019	1088.64948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.82	1	103.83	103.33	104.33	0.0082703								0	0	0	0.35985	1	27586	27586		10.183	1.5901	1				57403	12321	32851	32852	70379	70379					0.10870622710467615
WNILRKIF	8	Unmodified	_WNILRKIF_					0	0	0		ENST00000609175.1_1_13:53261778-53261967:+|nuORF	ENST00000609175.1_1_13:53261778-53261967:+|nuORF	ENST00000609175.1_1_13:53261778-53261967:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3043823242188	2	545.332019	1088.64948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.05	1	104.06	103.56	104.56	0.0082703								0	0	0	0.35985	1	27645	27645		10.183	0.83596	1				57404	12321	32851	32852	70380	70380					0.10870622710467615
WNILRKIF	8	Unmodified	_WNILRKIF_					0	0	0		ENST00000609175.1_1_13:53261778-53261967:+|nuORF	ENST00000609175.1_1_13:53261778-53261967:+|nuORF	ENST00000609175.1_1_13:53261778-53261967:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3174438476562	2	545.332019	1088.64948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.07	1	112.05	111.55	112.55	-0.015625								0	0	0	0.35985	1	29155	29155		10.183	0.83596	1				57405	12321	32851	32852	70381	70381					0.10870622710467615
WNIRDFRQY	9	Unmodified	_WNIRDFRQY_					0	0	0			REV__ENST00000555487.1_1_14:23847503-23847728:+|nuORF	REV__ENST00000555487.1_1_14:23847503-23847728:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.9029846191406	3	433.219395	1296.63635	0.17534	7.596E-05	0.061996	2.6858E-05	0.23733	0.00010282	433.21931810895546	21.336	0.1447	21.228	21.123	21.268	-0.10774					5	4	2	0	0	0	0.25756	1	2803	2803		7.1017	0.47827	1	34038	+		57406	17290	32852	32853	70382	70382					-9.860139584816352E-05
WNPRVKRVGR	10	Unmodified	_WNPRVKRVGR_					0	0	0		ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3779907226562	2	634.378355	1266.74216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.69	1	113.69	113.19	114.19	0								0	0	0	0.38202	1	29523	29523		0.40072	0	1				57407	12017	32853	32854	70383	70383					0.1194552049653339
WNPRVKRVGR	10	Unmodified	_WNPRVKRVGR_					0	0	0		ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3790893554688	2	634.378355	1266.74216	0.21996	0.00013954	-1.4306	-0.00090751	-1.2106	-0.00076798	634.3780513877844	105.12	0.11253	105.12	105.02	105.13	0.0018463					23	16	2	0	0	0	0.41085	1	27875	27875		1.4819	0	1	147140			57408	12017	32853	32854	70384	70384					0.1194552049653339
WNPRVKRVGR	10	Unmodified	_WNPRVKRVGR_					0	0	0		ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3775634765625	2	634.378355	1266.74216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.55	1	111.54	111.04	112.04	-0.013939								0	0	0	0.38166	1	29021	29021		1.4819	0	1				57409	12017	32853	32854	70385	70385					0.1194552049653339
WNPRVKRVGR	10	Unmodified	_WNPRVKRVGR_					0	0	0		ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3787231445312	2	634.378355	1266.74216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.68	1	111.66	111.16	112.16	-0.013939								0	0	0	0.38166	1	29052	29052		1.4819	0	1				57410	12017	32853	32854	70386	70386					0.1194552049653339
WNPRVKRVGR	10	Unmodified	_WNPRVKRVGR_					0	0	0		ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3786010742188	2	634.378355	1266.74216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.84	1	111.83	111.33	112.33	-0.015625								0	0	0	0.38166	1	29096	29096		1.4819	0	1				57411	12017	32853	32854	70387	70387					0.1194552049653339
WNPRVKRVGR	10	Unmodified	_WNPRVKRVGR_					0	0	0		ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	ENST00000570101.5_1_16:58700792-58701185:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.378173828125	2	634.378355	1266.74216	0.45981	0.00029169	-1.7913	-0.0011364	-1.3315	-0.00084467	634.3778945399409	112.94	0.71867	112.95	112.58	113.3	0.014824					129	86	2	0	0	0	0.41085	4	29318	29318;29351;29383;29426		1.4819	0	1	59766			57412	12017	32853	32854	70388;70389;70390;70391	70388					0.1194552049653339
WNQSKWSLNQK	11	Unmodified	_WNQSKWSLNQK_					0	0	0			REV__ENST00000458239.1_1_2:219496901-219498831:+|nuORF	REV__ENST00000458239.1_1_2:219496901-219498831:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.2744445800781	3	473.577359	1417.71025	-0.024596	-1.1648E-05	-0.33584	-0.00015905	-0.36044	-0.0001707	473.576930005115	25.542	0.20737	25.542	25.475	25.683	0					9	6	2	0	0	0	0.3331	1	4097	4097		1.0136	0	1	68567	+		57413	21185	32854	32855	70392	70392					0.01810063232073844
WNWSRTEPK	9	Unmodified	_WNWSRTEPK_					0	0	0			REV__ENST00000606522.1_1_6:10744394-10747789:-|nuORF	REV__ENST00000606522.1_1_6:10744394-10747789:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3323974609375	2	602.298904	1202.58326	0.35273	0.00021245	0.031947	1.9241E-05	0.38467	0.00023169	602.2987088527557	39.538	0.42059	39.637	39.396	39.817	0.099403					22	14	2	0	0	0	0.21389	1	8275	8275		25.399	3.8623	1	152460	+		57414	22662	32855	32856	70393	70393					-0.009932379222618692
WPALCVLCALA	11	Unmodified	_WPALCVLCALA_					0	0	0			REV__ENST00000373672.7_1_1:32120449-32122662:-|nuORF	REV__ENST00000373672.7_1_1:32120449-32122662:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3043212890625	2	580.303755	1158.59296	0.31722	0.00018408	0.57884	0.0003359	0.89606	0.00051999	580.3039808876694	62.281	0.66675	62.281	62.022	62.689	0					83	24	4	0	0	0	0.40313	1	15338	15338		10.824	0.67336	1	847210	+		57415	20448	32856	32857	70394	70394					0.020004907672728223
WPALCVLCALA	11	Unmodified	_WPALCVLCALA_					0	0	0			REV__ENST00000373672.7_1_1:32120449-32122662:-|nuORF	REV__ENST00000373672.7_1_1:32120449-32122662:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3042602539062	2	580.303755	1158.59296	0.25657	0.00014889	0.97926	0.00056827	1.2358	0.00071716	580.3040421390896	62.187	0.70776	62.284	62.03	62.738	0.096985					82	25	5	0	0	0	0.36487	1	15311	15311		15.847	1.4418	1	634800	+		57416	20448	32856	32857	70395	70395					0.020004907672728223
WPFAAISTV	9	Unmodified	_WPFAAISTV_					0	0	0		ENSG00000087253|ENST00000262134|LPCAT2;ENST00000566911.1_1_16:55543042-55559560:+|nuORF	ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2659912109375	2	496.26601	990.517468	0.38036	0.00018876	0.45775	0.00022717	0.83811	0.00041593	496.26610793384333	80.534	0.85478	80.534	80.124	80.979	0					80	36	3	0	0	0	0.037693	4	20923	20877;20923;20976;20988		57.471	21.427	1	788850			57417	1300	32857	32858	70396;70397;70398;70399	70397					0.021829729028468137
WPFAAISTV	9	Unmodified	_WPFAAISTV_					0	0	0		ENSG00000087253|ENST00000262134|LPCAT2;ENST00000566911.1_1_16:55543042-55559560:+|nuORF	ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.2659606933594	2	496.26601	990.517468	0.28063	0.00013927	0.38363	0.00019038	0.66426	0.00032965	496.2661614082932	80.529	0.83693	80.594	80.109	80.946	0.065094					73	32	3	0	0	0	0.055495	1	20925	20925		50.855	14.811	1	868410			57418	1300	32857	32858	70400	70400					0.021829729028468137
WPFAAISTV	9	Unmodified	_WPFAAISTV_					0	0	0		ENSG00000087253|ENST00000262134|LPCAT2;ENST00000566911.1_1_16:55543042-55559560:+|nuORF	ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2657470703125	2	496.26601	990.517468	0.36171	0.00017951	0.030896	1.5332E-05	0.39261	0.00019484	496.26597152139664	80.605	0.96759	80.579	80.142	81.109	-0.026825					80	36	3	0	0	0	0.037693	4	20925	20871;20925;20976;21006		57.471	21.427	1	924110			57419	1300	32857	32858	70401;70402;70403;70404	70402					0.021829729028468137
WPFAAISTV	9	Unmodified	_WPFAAISTV_					0	0	0		ENSG00000087253|ENST00000262134|LPCAT2;ENST00000566911.1_1_16:55543042-55559560:+|nuORF	ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	496.26601	990.517468	0.28063	0.00013927	0.38363	0.00019038	0.66426	0.00032965	496.2661614082932	80.529	0.83693	80.594	80.109	80.946	0.065094	0.024906	8.0276E-05	NaN	57.471	73	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	868410			57420	1300	32857	32858							0.021829729028468137
WPFLYTMFI	9	Unmodified	_WPFLYTMFI_					0	0	0			REV__ENST00000527252.1_1_11:103339262-103349978:+|nuORF	REV__ENST00000527252.1_1_11:103339262-103349978:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.547607421875	3	406.540306	1216.59909	-0.20148	-8.191E-05	-2.4802	-0.0010083	-2.6817	-0.0010902	406.5390657297929	33.592	0.52679	33.658	33.297	33.824	0.0667					25	18	2	0	0	0	0.27726	1	6521	6521		12.241	0.06591	1	62206	+		57421	21974	32858	32859	70405	70405					-0.0005466772954605403
WPFLYTMFI	9	Unmodified	_WPFLYTMFI_					0	0	0			REV__ENST00000527252.1_1_11:103339262-103349978:+|nuORF	REV__ENST00000527252.1_1_11:103339262-103349978:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	406.540306	1216.59909	0.14532	5.9076E-05	-3.6844	-0.0014979	-3.5391	-0.0014388	406.53920871635887	33.762	0.30082	33.762	33.538	33.839	0	0.051612	-0.0010173	NaN	12.241	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76695	+		57422	21974	32858	32859							-0.0005466772954605403
WPGLHRWE	8	Unmodified	_WPGLHRWE_					0	0	0		ENST00000475523.5_1_1:2490852-2490960:+|nuORF	ENST00000475523.5_1_1:2490852-2490960:+|nuORF	ENST00000475523.5_1_1:2490852-2490960:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.788330078125	2	540.772326	1079.5301	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.592	1	21.543	21.043	22.043	-0.049377								0	0	0	0.35663	1	2886	2886		11.64	1.4569	1				57423	10936	32859	32860	70406	70406					-0.0064857091424528335
WPGLSASLI	9	Unmodified	_WPGLSASLI_					0	0	0			REV__ENST00000360507.9_1_2:220037016-220037259:-|nuORF	REV__ENST00000360507.9_1_2:220037016-220037259:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	472.275390625	2	472.26601	942.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.182	1	86.266	85.766	86.766	0.084251								0	0	0	0.24522	1	22663	22663		7.9102	2.1497	1		+		57424	20259	32860	32861	70407	70407					0.04390972902854173
WPILLDINA	9	Unmodified	_WPILLDINA_					0	0	0			REV__ENST00000437840.6_1_6:33264453-33266669:-|nuORF	REV__ENST00000437840.6_1_6:33264453-33266669:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2832641601562	2	527.800217	1053.58588	0.57123	0.0003015	-0.74521	-0.00039332	-0.17398	-9.1825E-05	527.7987508437787	17.024	0.10913	16.963	16.917	17.026	-0.060429					5	3	2	0	0	0	0.26168	1	1508	1508		1.8442	0	1	13802	+		57425	21018	32861	32862	70408	70408					0.06123217482695509
WPIRTELFLP	10	Unmodified	_WPIRTELFLP_					0	0	0			REV__nc|ENSG00000111605|Q16630-2|CPSF6	REV__nc|ENSG00000111605|Q16630-2|CPSF6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.3497924804688	2	636.360973	1270.70739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.122	1	93.122	92.622	93.622	0								0	0	0	0.38126	1	24793	24793		1.6526	0	1		+		57426	22940	32862	32863	70409	70409					0.08286839845209215
WPKDRRKC	8	Unmodified	_WPKDRRKC_					0	0	0		ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.29541015625	2	544.792735	1087.57092	0.55333	0.00030145	-0.08644	-4.7092E-05	0.46689	0.00025436	544.7919125350631	114.2	0.64891	114.22	114.08	114.73	0.016708					108	79	2	0	0	0	0.46022	1	29685	29685		2.3027	0.24298	1	34835			57427	6772	32863	32864	70410	70410					0.030634471337180003
WPLLPMLP	8	Unmodified	_WPLLPMLP_					0	0	0		ENST00000600534.1_1_19:59084484-59085060:+|nuORF	ENST00000600534.1_1_19:59084484-59085060:+|nuORF	ENST00000600534.1_1_19:59084484-59085060:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2671813964844	2	483.777699	965.540846	-0.13911	-6.7299E-05	0.018512	8.9557E-06	-0.1206	-5.8343E-05	483.7777798856607	12.356	0.15933	12.356	12.273	12.433	0					6	4	2	0	0	0	0.34434	1	103	103		0.79363	0.79363	1	22332			57428	12249	32864	32865	70411	70411					0.05669695415815568
WPLPALTFSVL	11	Unmodified	_WPLPALTFSVL_					0	0	0			REV__ENST00000357325.9_1_1:156711975-156712116:-|nuORF	REV__ENST00000357325.9_1_1:156711975-156712116:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.9066162109375	3	415.241025	1242.70125	0.45011	0.00018691	0.41168	0.00017094	0.86179	0.00035785	415.5757350021894	40.436	0.72111	40.528	40.284	41.005	0.09267					103	26	5	0	0	0	0.32951	1	8664	8664		4.4062	0	1	2066600	+		57429	20213	32865	32866	70412	70412					0.08960321613699307
WPLVIDPQQ	9	Unmodified	_WPLVIDPQQ_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3074340820312	2	548.295299	1094.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.3	1	117.3	116.8	117.8	0								0	0	0	0.264	1	30339	30339		1.8442	1.2427	1				57430	2033	32866	32867	70413	70413					0.032540294773070855
WPPLPALEV	9	Unmodified	_WPPLPALEV_					0	0	0			REV__ENST00000585439.1_1_19:10446311-10450252:-|nuORF	REV__ENST00000585439.1_1_19:10446311-10450252:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.289794921875	2	511.289485	1020.56442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.47	1	112.47	111.97	112.97	0								0	0	0	0.26258	1	29234	29234		2.3027	0	1		+		57431	22510	32867	32868	70414	70414					0.05495832453971161
WPPLPALEV	9	Unmodified	_WPPLPALEV_					0	0	0			REV__ENST00000585439.1_1_19:10446311-10450252:-|nuORF	REV__ENST00000585439.1_1_19:10446311-10450252:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.29046630859375	2	511.289485	1020.56442	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.34	1	112.35	111.85	112.85	0.0131								0	0	0	0.26258	1	29240	29240		2.3027	0	1		+		57432	22510	32867	32868	70415	70415					0.05495832453971161
WPQFLCSSP	9	Unmodified	_WPQFLCSSP_					0	0	0			REV__ENST00000582436.5_1_17:27253816-27277966:-|nuORF	REV__ENST00000582436.5_1_17:27253816-27277966:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7468872070312	2	532.747127	1063.4797	-0.021471	-1.1439E-05	-0.23765	-0.00012661	-0.25912	-0.00013804	532.7469536944812	13.726	0.46271	13.621	13.41	13.873	-0.10466					34	16	3	0	0	0	0.25706	1	517	517		6.7232	0	1	143980	+		57433	22491	32868	32869	70416	70416					-0.04949861354248242
WPQFLCSSP	9	Unmodified	_WPQFLCSSP_					0	0	0			REV__ENST00000582436.5_1_17:27253816-27277966:-|nuORF	REV__ENST00000582436.5_1_17:27253816-27277966:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	532.747127	1063.4797	0.10307	5.4913E-05	-0.32125	-0.00017114	-0.21817	-0.00011623	532.7468723562151	13.726	0.3683	13.66	13.521	13.889	-0.066068	0.016371	9.384E-05	NaN	6.7232	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142880	+		57434	22491	32868	32869							-0.04949861354248242
WPRGRRRRRRR	11	Unmodified	_WPRGRRRRRRR_					0	0	0			REV__ENST00000229416.10_1_6:53409415-53409676:-|nuORF	REV__ENST00000229416.10_1_6:53409415-53409676:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.26904296875	3	536.664941	1606.97299	1.0922	0.00058612	3.8285	0.0020546	4.9206	0.0026407	536.6668681157652	50.603	0.1603	50.624	50.552	50.712	0.020691					7	5	2	0	0	0	0.33352	1	11728	11728		0	0	1	157460	+		57435	19459	32869	32870	70417	70417					0.19378586321727198
WPRNPPSRLL	10	Unmodified	_WPRNPPSRLL_					0	0	0		ENSG00000110011|ENST00000628077|DNAJC4	ENSG00000110011|ENST00000628077|DNAJC4	ENSG00000110011|ENST00000628077|DNAJC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.555908203125	3	412.571768	1234.69348	0.068206	2.814E-05	0.056983	2.351E-05	0.12519	5.1649E-05	412.57197246707096	45.291	0.48628	45.291	44.855	45.341	0					22	17	2	0	0	0	0.31701	1	10088	10088		4.7159	0.83959	1	102980			57436	2288	32870	32871	70418	70418					0.08551607136791972
WPRNPPSRLL	10	Unmodified	_WPRNPPSRLL_					0	0	0		ENSG00000110011|ENST00000628077|DNAJC4	ENSG00000110011|ENST00000628077|DNAJC4	ENSG00000110011|ENST00000628077|DNAJC4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	412.571768	1234.69348	0.37347	0.00015408	-0.18178	-7.4998E-05	0.19169	7.9086E-05	412.90590535372695	44.837	0.26707	44.912	44.749	45.016	0.07505	-0.18988	-0.00012915	NaN	4.7159	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80264			57437	2288	32870	32871							0.08551607136791972
WPSLHVEEFLL	11	Unmodified	_WPSLHVEEFLL_					0	0	0		KNTC1|p.D375Lfs*14|1|0.04|ENSG00000184445|chr12:122551354-122551355|-/TTAAG|frameshift_variant;ENSG00000184445|ENST00000333479|KNTC1	KNTC1|p.D375Lfs*14|1|0.04|ENSG00000184445|chr12:122551354-122551355|-/TTAAG|frameshift_variant	KNTC1|p.D375Lfs*14|1|0.04|ENSG00000184445|chr12:122551354-122551355|-/TTAAG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.24334716796875	3	457.243206	1368.70779	0.22634	0.00010349	-0.11035	-5.0456E-05	0.11599	5.3036E-05	457.2431012848155	53.207	1.3879	53.197	52.761	54.149	-0.0096054					137	51	4	0	0	0	0.44966	1	12592	12592		4.7159	0.30977	1	2896400			57438	7455	32871	32872	70419	70419					0.03818214774423723
WPTSLNAPAP	10	Unmodified	_WPTSLNAPAP_					0	0	0			REV__nc|ENSG00000122257|Q7Z6E9-2|RBBP6	REV__nc|ENSG00000122257|Q7Z6E9-2|RBBP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.30615234375	2	527.271824	1052.5291	0.46135	0.00024326	1.1684	0.00061608	1.6298	0.00085934	527.2724199548194	24.998	0.13345	24.998	24.958	25.091	0					5	4	2	0	0	0	0.31889	1	3923	3923		6.2058	0.97511	1	31188	+		57439	15153	32872	32873	70420	70420					0.004931699261760514
WPTWAGVTCS	10	Unmodified	_WPTWAGVTCS_					0	0	0		ENST00000595170.1_3_16:11556095-11569480:-|nuORF	ENST00000595170.1_3_16:11556095-11569480:-|nuORF	ENST00000595170.1_3_16:11556095-11569480:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.2500610351562	2	554.250034	1106.48552	0.3223	0.00017863	0.32	0.00017736	0.64229	0.00035599	554.2500859989722	92.434	0.50083	92.523	92.287	92.788	0.089195					58	35	2	0	0	0	0.39935	1	24557	24557		3.5965	0.60125	1	178870			57440	12220	32873	32874	70421	70421					-0.06346762842599674
WPVGCWRLGCV	11	Unmodified	_WPVGCWRLGCV_					0	0	0		ENST00000349048.8_1_21:45746814-45747210:+|nuORF	ENST00000349048.8_1_21:45746814-45747210:+|nuORF	ENST00000349048.8_1_21:45746814-45747210:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.8134155273438	2	638.309903	1274.60525	0.71842	0.00045857	2.0154	0.0012865	2.7338	0.001745	638.3109664184252	72.861	0.49905	72.832	72.627	73.126	-0.029305					26	17	3	0	0	0	0.41896	1	18627	18627		8.7454	2.0222	1	174410			57441	9571	32874	32875	70422	70422					-0.021064727696966656
WPVPKLRRSL	10	Unmodified	_WPVPKLRRSL_					0	0	0		ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.3867797851562	2	626.387857	1250.76116	0.12645	7.921E-05	1.075	0.00067335	1.2014	0.00075256	626.3887605547325	111.84	0.17879	111.85	111.77	111.95	0.0131					32	21	2	0	0	0	0.41673	1	29096	29096		0.40072	0	1	70784			57442	7603	32875	32876	70423	70423					0.14581057067607617
WPVPKLRRSL	10	Unmodified	_WPVPKLRRSL_					0	0	0		ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	626.387857	1250.76116	-0.032161	-2.0146E-05	0.75604	0.00047357	0.72388	0.00045343	626.8894412178771	111.64	0.12119	111.64	111.56	111.68	0	0.028551	-0.00022009	NaN	0.40072	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63388			57443	7603	32875	32876							0.14581057067607617
WPVPKLRRSL	10	Unmodified	_WPVPKLRRSL_					0	0	0		ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	ENSG00000186212|ENST00000334306|SOWAHB	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	626.387857	1250.76116	-0.19668	-0.0001232	2.1131	0.0013236	1.9164	0.0012004	626.8899308128649	111.36	0.038834	111.34	111.31	111.35	-0.013939	-0.26665	0.00148	NaN	0.40072	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67130			57444	7603	32875	32876							0.14581057067607617
WPYGNRQEI	9	Unmodified	_WPYGNRQEI_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7860107421875	2	581.78563	1161.55671	0.46849	0.00027256	-0.4939	-0.00028735	-0.025419	-1.4788E-05	581.7854512103155	44.449	0.64865	44.517	44.274	44.922	0.068569					62	23	4	0	0	0	0.10058	1	9867	9867		53.833	21.047	1	502810			57445	2872	32876	32877	70424	70424					-0.017609268135629463
WPYGNRQEI	9	Unmodified	_WPYGNRQEI_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.7136840820312	2	581.78563	1161.55671	0.39771	0.00023138	-0.50541	-0.00029404	-0.1077	-6.2659E-05	582.2868921945885	44.398	0.63499	44.473	44.2	44.835	0.075047					71	22	4	0	0	0	0.25949	1	9750	9750		4.897	4.897	1	390410			57446	2872	32876	32877	70425	70425					-0.017609268135629463
WPYGNRQEI	9	Unmodified	_WPYGNRQEI_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	581.78563	1161.55671	0.52052	0.00030283	-0.32664	-0.00019003	0.19389	0.0001128	581.7855532924087	44.83	0.74552	44.83	44.493	45.238	0	0.22346	0.00016279	NaN	53.833	67	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300580			57447	2872	32876	32877							-0.017609268135629463
WQADTRHAL	9	Unmodified	_WQADTRHAL_					0	0	0		nc|ENSG00000165887|Q9GZV1-2|ANKRD2;ENSG00000165887|ENST00000370655|ANKRD2;nc|ENSG00000165887|Q9GZV1|ANKRD2	nc|ENSG00000165887|Q9GZV1-2|ANKRD2	nc|ENSG00000165887|Q9GZV1-2|ANKRD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7595825195312	2	549.277972	1096.54139	0.9366	0.00051446	-0.73916	-0.000406	0.19745	0.00010845	549.7778412079181	78.349	0.43063	78.318	78.17	78.601	-0.030434					29	16	2	0	0	0	0.23007	1	20286	20286		19.257	2.3147	1	262080			57448	6007	32877	32878	70426	70426					-0.0030179361078808142
WQGKMYTAI	9	Unmodified	_WQGKMYTAI_					0	0	0			REV__ENSG00000171522|ENST00000302472|PTGER4	REV__ENSG00000171522|ENST00000302472|PTGER4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7594604492188	2	549.276052	1096.53755	0.7747	0.00042552	4.0337	0.0022156	4.8084	0.0026411	549.2793142584244	78.271	0.43922	78.329	78.115	78.554	0.058151					27	15	2	0	0	0	0.22188	1	20241	20241		20.454	1.1966	1	219510	+		57449	17649	32878	32879	70427	70427					-0.00685599428857131
WQHPFLNVF	9	Unmodified	_WQHPFLNVF_					0	0	0		ENSG00000161996|ENST00000293879|WDR90;ENST00000552943.5_1_16:699416-703842:+|nuORF;nc|ENSG00000161996|Q96KV7-3|WDR90;ENST00000420061.6_1_16:699416-706047:+|nuORF;nc|ENSG00000161996|Q96KV7-5|WDR90;ENST00000549648.5_1_16:699416-706047:+|nuORF	ENSG00000161996|ENST00000293879|WDR90	ENSG00000161996|ENST00000293879|WDR90	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.7853393554688	2	594.303458	1186.59236	0.60415	0.00035905	-0.8076	-0.00047996	-0.20345	-0.00012091	594.3025312901252	82.622	0.38725	82.622	82.513	82.9	0					21	13	3	0	0	0	0.25879	1	21649	21649		4.756	0.81161	1	112550			57450	5540	32879	32880	70428	70428					0.006531554340881485
WQIAENENF	9	Unmodified	_WQIAENENF_					0	0	0			REV__ENSG00000170522|ENST00000302274|ELOVL6	REV__ENSG00000170522|ENST00000302274|ELOVL6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8432006835938	2	575.76182	1149.50909	0.43035	0.00024778	1.2765	0.00073495	1.7068	0.00098273	576.2649254810606	85.43	0.20652	85.43	85.256	85.462	0					9	7	2	0	0	0	0.25417	1	22401	22401		4.756	0	1	71409	+		57451	17583	32880	32881	70429	70429					-0.05968625804439398
WQIFRLMLV	9	Unmodified	_WQIFRLMLV_					0	0	0			REV__ENST00000321521.13_1_5:102482350-102484949:+|nuORF	REV__ENST00000321521.13_1_5:102482350-102484949:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.3467407226562	2	603.346812	1204.67907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.635	1	94.635	94.135	95.135	0								0	0	0	0.26334	1	25244	25244		2.0598	0	1		+		57452	19969	32881	32882	70430	70430					0.08491818664288076
WQIILTWLPL	10	Unmodified	_WQIILTWLPL_					0	0	0			REV__ENST00000261488.10_1_13:43987046-43987121:-|nuORF	REV__ENST00000261488.10_1_13:43987046-43987121:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	641.8837280273438	2	641.881542	1281.74853	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.354	1	96.35	95.85	96.85	-0.0038147								0	0	0	0.38126	1	25766	25766		1.6526	0	1		+		57453	19594	32882	32883	70431	70431					0.11892600884698368
WQIPQYLLI	9	Unmodified	_WQIPQYLLI_					0	0	0		ENSG00000110446|ENST00000227880|SLC15A3	ENSG00000110446|ENST00000227880|SLC15A3	ENSG00000110446|ENST00000227880|SLC15A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8345947265625	2	587.336967	1172.65938	0.026923	1.5813E-05	-0.25475	-0.00014962	-0.22782	-0.00013381	587.3370197362478	81.067	0.47924	81.132	80.999	81.478	0.065094					31	24	2	0	0	0	0.25526	1	21079	21079		7.9102	3.1541	1	122150			57454	2313	32883	32884	70432	70432					0.07995765925170417
WQIPQYLLI	9	Unmodified	_WQIPQYLLI_					0	0	0		ENSG00000110446|ENST00000227880|SLC15A3	ENSG00000110446|ENST00000227880|SLC15A3	ENSG00000110446|ENST00000227880|SLC15A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8340454101562	2	587.336967	1172.65938	0.36322	0.00021333	-1.5547	-0.00091314	-1.1915	-0.00069981	587.3365637901774	81.286	0.47659	81.262	80.941	81.418	-0.02404					31	19	2	0	0	0	0.25526	1	21100	21100		7.9102	1.187	1	229920			57455	2313	32883	32884	70433	70433					0.07995765925170417
WQKDDLFNGG	10	Unmodified	_WQKDDLFNGG_					0	0	0			REV__nc|ENSG00000196104|Q9BQ16-9|SPOCK3	REV__nc|ENSG00000196104|Q9BQ16-9|SPOCK3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.2778930664062	2	590.275095	1178.53564	0.16685	9.8487E-05	2.9111	0.0017184	3.078	0.0018169	590.2767546541921	17.114	0.30893	16.997	16.828	17.137	-0.11739					18	10	2	0	0	0	0.41168	1	1563	1563		1.3295	0.25807	1	22319	+		57456	18618	32884	32885	70434	70434					-0.04648936913099533
WQKEWNELI	9	Unmodified	_WQKEWNELI_					0	0	0		nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;ENSG00000264522|ENST00000581312|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.87237548828125	3	415.880267	1244.61897	-0.5003	-0.00020806	1.1213	0.00046631	0.62096	0.00025825	415.8810575232335	34.595	0.7241	34.673	34.336	35.06	0.077381					70	25	4	0	0	0	0.30623	1	6924	6924		4.897	0	1	310630			57457	8669	32885	32886	70435	70435					0.006447995347571123
WQNPHMLFL	9	Oxidation (M)	_WQNPHM(Oxidation (M))LFL_		WQNPHM(1)LFL		WQNPHM(51)LFL	0	0	1		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.2972412109375	2	601.294776	1200.575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.702	1	59.691	59.191	60.191	-0.011486								0	0	0	0.083439	1	14546	14546		50.855	22.368	1				57458	557	32886	32887	70436	70436		61			-0.017265081632331203
WQPEDWDLEYF	11	Unmodified	_WQPEDWDLEYF_					0	0	0			REV__TRAPPC11|p.P618Lfs*20|1|0.29|ENSG00000168538|chr4:183686707-183686710|CCCA/-|frameshift_variant	REV__TRAPPC11|p.P618Lfs*20|1|0.29|ENSG00000168538|chr4:183686707-183686710|CCCA/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.8855285644531	3	509.885747	1526.63541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.639	1	92.728	92.228	93.228	0.089195								0	0	0	0.38222	1	24643	24643		0.094841	0	1		+		57459	17467	32887	32888	70437	70437					-0.10684164089821024
WQPLGLLL	8	Unmodified	_WQPLGLLL_					0	0	0			REV__ENST00000520427.1_1_5:139931625-139936746:-|nuORF	REV__ENST00000520427.1_1_5:139931625-139936746:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	470.2722473144531	2	470.286746	938.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.381	1	82.36	81.86	82.86	-0.020584								0	0	0	0.37664	1	21486	21486		2.5775	0	1		+		57460	21884	32888	32889	70438	70438					0.08720153662181929
WQQIQNEIAKR	11	Unmodified	_WQQIQNEIAKR_					0	0	0			REV__ENSG00000146426|ENST00000682666|TIAM2	REV__ENSG00000146426|ENST00000682666|TIAM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.9247131347656	3	471.924759	1412.75245	0.24026	0.00011338	-0.20041	-9.4577E-05	0.03985	1.8806E-05	471.9246025259412	37.759	0.79124	37.85	37.555	38.347	0.090881					81	28	4	0	0	0	0.47633	1	7855	7855		1.2148	0	1	1280600	+		57461	16349	32889	32890	70439	70439					0.06258038640453378
WQQLAGQL	8	Unmodified	_WQQLAGQL_					0	0	0			REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	REV__nc|ENSG00000165716|Q5VUD6-2|DIPK1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.77001953125	2	472.253434	942.492316	0.48849	0.00023069	3.2984	0.0015577	3.7869	0.0017884	472.2537493801682	74.669	0.1665	74.669	74.537	74.703	0					7	5	2	0	0	0	0.3366	1	19106	19106		18.135	4.6271	1	76910	+		57462	17260	32890	32891	70440	70440					0.018769181002767255
WQQLKGPL	8	Unmodified	_WQQLKGPL_					0	0	0			REV__ENST00000433579.1_1_7:42961481-42964274:-|nuORF	REV__ENST00000433579.1_1_7:42961481-42964274:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.27752685546875	2	485.279452	968.544351	0.0053653	2.6037E-06	0.95691	0.00046437	0.96227	0.00046697	485.2775308071677	28.37	0.54803	28.37	28.181	28.729	0					44	18	4	0	0	0	0.4397	1	4990	4990		9.3474	0	1	129040	+		57463	20971	32891	32892	70441	70441					0.05882081514039328
WQRALDYLS	9	Unmodified	_WQRALDYLS_					0	0	0		nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1	nc|ENSG00000168781|Q6PFW1-7|PPIP5K1	nc|ENSG00000168781|Q6PFW1-7|PPIP5K1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.2938232421875	2	576.29583	1150.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.31	1	111.31	110.81	111.81	0								0	0	0	0.25499	1	28957	28957		4.756	1.1595	1				57464	6299	32892	32893	70442	70442					0.007842438462148493
WQRISEWK	8	Unmodified	_WQRISEWK_					0	0	0		ENST00000556551.2_1_14:74325599-74340738:+|nuORF	ENST00000556551.2_1_14:74325599-74340738:+|nuORF	ENST00000556551.2_1_14:74325599-74340738:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2794799804688	2	566.79854	1131.58253	0.20706	0.00011736	-2.4998	-0.0014169	-2.2927	-0.0012995	566.7983598153348	112.59	0.035187	112.61	112.58	112.62	0.0131					5	3	2	0	0	0	0.34408	1	29304	29304		2.3027	0.24298	1	16658			57465	11863	32893	32894	70443	70443					0.021999674287144444
WQRLRQQAS	9	Unmodified	_WQRLRQQAS_					0	0	0			REV__KIF13B|p.P1191Qfs*10|1|0.22|ENSG00000197892|chr8:29118956-29118956|G/-|frameshift_variant	REV__KIF13B|p.P1191Qfs*10|1|0.22|ENSG00000197892|chr8:29118956-29118956|G/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.834228515625	2	586.817796	1171.62104	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.088	1	80.06	79.56	80.56	-0.02774								0	0	0	0.24715	1	20783	20783		7.2892	0.56607	1		+		57466	18779	32894	32895	70444	70444					0.042092730632248276
WQTLLQKSR	9	Unmodified	_WQTLLQKSR_					0	0	0			REV__nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	REV__nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3338623046875	2	580.332747	1158.65094	0.32287	0.00018737	1.0681	0.00061987	1.391	0.00080724	580.3333623433139	91.072	0.42671	91.163	91.11	91.537	0.090668					46	32	2	0	0	0	0.34681	1	24217	24217		1.8442	0	1	460340	+		57467	14980	32895	32896	70445	70445					0.07796212008565817
WQVMKTVL	8	Unmodified	_WQVMKTVL_					0	0	0			REV__ENST00000448493.7_2_13:99667890-99667971:-|nuORF	REV__ENST00000448493.7_2_13:99667890-99667971:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	502.8144226074219	2	502.783513	1003.55247	0.49226	0.0002475	3.1962	0.001607	3.6884	0.0018545	503.28548148422544	87.935	1.0188	87.935	87.484	88.503	0					82	51	2	0	0	0	0.34167	1	23076	23076		11.64	4.9171	1	169720	+		57468	21095	32896	32897	70446	70446					0.050838924391541696
WRASFHLTL	9	Unmodified	_WRASFHLTL_					0	0	0		ENST00000506857.5_1_5:61643028-61643980:+|nuORF	ENST00000506857.5_1_5:61643028-61643980:+|nuORF	ENST00000506857.5_1_5:61643028-61643980:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.2412109375	2	565.808908	1129.60326	0.17813	0.00010079	0.61898	0.00035022	0.79711	0.00045101	565.809594455063	16.821	0.63615	16.706	16.448	17.084	-0.11434					48	22	3	0	0	0	0.26257	1	1517	1517		0.52476	0	1	110390			57469	11330	32897	32898	70447	70447					0.043645578083669534
WRCRAQEF	8	Unmodified	_WRCRAQEF_					0	0	0		ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN;ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN	ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.345947265625	2	548.261268	1094.50798	0.62178	0.0003409	0.43742	0.00023982	1.0592	0.00058072	548.2614105667667	85.785	1.23	85.785	84.994	86.224	0					64	46	2	0	0	0	0.34337	1	22320	22320		5.2307	0	1	671510			57470	4731	32898	32899	70448	70448					-0.0354911865433678
WRCRAQEF	8	Unmodified	_WRCRAQEF_					0	0	0		ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN;ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN	ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.345947265625	2	548.261268	1094.50798	0.66646	0.00036539	0.21535	0.00011807	0.8818	0.00048346	548.2612939831233	85.645	1.2776	85.73	84.958	86.235	0.084251					67	48	2	0	0	0	0.34337	1	22302	22302		5.2307	5.2307	1	1002900			57471	4731	32898	32899	70449	70449					-0.0354911865433678
WRCRAQEF	8	Unmodified	_WRCRAQEF_					0	0	0		ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant;nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN;ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN	ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	548.261268	1094.50798	0.69543	0.00038128	0.26303	0.00014421	0.95846	0.00052549	548.2613238280524	85.811	1.3111	85.802	84.945	86.256	-0.0090103	0.029693	-4.7181E-05	NaN	5.2307	68	50	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	722470			57472	4731	32898	32899							-0.0354911865433678
WRFPNPSL	8	Unmodified	_WRFPNPSL_					0	0	0			REV__ENST00000520547.3_1_10:81273304-81273505:+|nuORF	REV__ENST00000520547.3_1_10:81273304-81273505:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7672424316406	2	508.769252	1015.52395	0.20281	0.00010318	-1.1376	-0.00057875	-0.93475	-0.00047557	508.7685589016826	16.453	0.73903	16.453	15.981	16.72	0					69	25	3	0	0	0	0.45307	1	1213	1213		4.756	0.81161	1	430450	+		57473	21886	32899	32900	70450	70450					0.016809108542361173
WRGFKIRQQMR	11	Unmodified	_WRGFKIRQQMR_					0	0	0		nc|ENSG00000130518|Q9H0B3-2|IQCN;nc|ENSG00000130518|Q9H0B3-5|IQCN;nc|ENSG00000130518|Q9H0B3|IQCN;ENSG00000130518|ENST00000392413|IQCN;nc|ENSG00000130518|Q9H0B3-3|IQCN;ENST00000599638.2_1_19:18367992-18369432:-|nuORF	nc|ENSG00000130518|Q9H0B3-2|IQCN	nc|ENSG00000130518|Q9H0B3-2|IQCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	502.2816162109375	3	502.613861	1504.81975	0.40333	0.00020272	-0.65494	-0.00032918	-0.25161	-0.00012646	502.61357545733034	37.052	1.9088	37.139	36.682	38.591	0.08741					113	69	2	0	0	0	0.33296	1	7690	7690		1.2148	0.20126	1	595140			57474	3481	32900	32901	70451	70451					0.08753790370406023
WRHWRRRL	8	Unmodified	_WRHWRRRL_					0	0	0			REV__ENSG00000215644|ENST00000400723|GCGR	REV__ENSG00000215644|ENST00000400723|GCGR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.369140625	2	633.365582	1264.71661	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.14	1	114.16	113.66	114.66	0.016708								0	0	0	0.38004	1	29687	29687		0.69038	0.16561	1		+		57475	19081	32901	32902	70452	70452					0.0948409076477219
WRIRTGEK	8	Unmodified	_WRIRTGEK_					0	0	0		ENST00000599581.5_1_19:52786637-52794448:+|nuORF;ENSG00000196214|ENST00000439461|ZNF766	ENST00000599581.5_1_19:52786637-52794448:+|nuORF	ENST00000599581.5_1_19:52786637-52794448:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.26708984375	2	523.298707	1044.58286	0.30357	0.00015886	-3.1449	-0.0016457	-2.8413	-0.0014869	523.2964429919565	19.365	0.25283	19.249	19.031	19.284	-0.11592					10	8	2	0	0	0	0.34272	1	2164	2164		7.9102	0	1	39461			57476	7837	32902	32903	70453	70453					0.06235387148535665
WRKFGIGLL	9	Unmodified	_WRKFGIGLL_					0	0	0		nc|ENSG00000183032|Q9BQT8-2|SLC25A21;ENSG00000183032|ENST00000331299|SLC25A21	nc|ENSG00000183032|Q9BQT8-2|SLC25A21	nc|ENSG00000183032|Q9BQT8-2|SLC25A21	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3164672851562	2	545.332019	1088.64948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.377	1	91.468	90.968	91.968	0.090668								0	0	0	0.24715	1	24252	24252		7.2892	1.0834	1				57477	7340	32903	32904	70454	70454					0.10870622710467615
WRLHFEFV	8	Unmodified	_WRLHFEFV_					0	0	0		ENST00000496906.1_1_9:35750742-35753913:+|nuORF;ENSG00000107185|ENST00000378078|RGP1	ENST00000496906.1_1_9:35750742-35753913:+|nuORF	ENST00000496906.1_1_9:35750742-35753913:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2796020507812	2	567.298176	1132.5818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.85	1	114.86	114.36	115.36	0.016708								0	0	0	0.37277	1	29858	29858		4.3292	0	1				57478	2114	32904	32905	70455	70455					0.020811727796399282
WRLIEVLPW	9	Unmodified	_WRLIEVLPW_					0	0	0		chrX:70610543-70613253|397|28.71|0.16|7.46|-|1|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|38	chrX:70610543-70613253|397|28.71|0.16|7.46|-|1|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|38	chrX:70610543-70613253|397|28.71|0.16|7.46|-|1|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|38	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3688354492188	2	606.350409	1210.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.86	1	112.87	112.37	113.37	0.014824								0	0	0	0.26704	1	29365	29365		0.6015	0	1				57479	181	32905	32906	70456	70456					0.08934874536362258
WRLKKSLVST	10	Unmodified	_WRLKKSLVST_					0	0	0		nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-2|DEPDC5	nc|ENSG00000100150|O75140-5|DEPDC5	nc|ENSG00000100150|O75140-5|DEPDC5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.5834655761719	3	406.583674	1216.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.09	1	104.09	103.59	104.59	0.0011444								0	0	0	0.38126	1	27667	27667		0.69767	0	1				57480	12611	32906	32907	70457	70457					0.1294964459377752
WRLKRRWNAFR	11	Unmodified	_WRLKRRWNAFR_					0	0	0		ENST00000505606.6_1_5:43121886-43122210:+|nuORF	ENST00000505606.6_1_5:43121886-43122210:+|nuORF	ENST00000505606.6_1_5:43121886-43122210:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2576293945312	3	530.307649	1587.90112	0.46717	0.00024774	0.52961	0.00028086	0.99678	0.0005286	530.308152089661	30.446	0.34106	30.474	30.324	30.665	0.027946					14	11	2	0	0	0	0.33351	1	5616	5616		0.094841	0.011491	1	82406			57481	11316	32907	32908	70458	70458					0.13068234124671108
WRLKRRWNAFR	11	Unmodified	_WRLKRRWNAFR_					0	0	0		ENST00000505606.6_1_5:43121886-43122210:+|nuORF	ENST00000505606.6_1_5:43121886-43122210:+|nuORF	ENST00000505606.6_1_5:43121886-43122210:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	530.307649	1587.90112	0.56306	0.00029859	0.43186	0.00022902	0.99492	0.00052761	530.3079127643391	30.475	0.19196	30.475	30.333	30.525	0	0.00070951	-2.2518E-05	NaN	0.094841	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96987			57482	11316	32907	32908							0.13068234124671108
WRLRGLNVS	9	Unmodified	_WRLRGLNVS_					0	0	0		ENST00000485557.5_1_6:31939492-31939660:-|nuORF	ENST00000485557.5_1_6:31939492-31939660:-|nuORF	ENST00000485557.5_1_6:31939492-31939660:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.8323364257812	2	550.819807	1099.62506	0.087144	4.8E-05	-2.1212	-0.0011684	-2.0341	-0.0011204	550.8187133458172	13.389	0.27671	13.29	13.189	13.466	-0.099291					12	9	2	0	0	0	0.26168	1	389	389		1.8442	0.51471	1	13942			57483	11091	32908	32909	70459	70459					0.07923362556925895
WRLRGLNVS	9	Unmodified	_WRLRGLNVS_					0	0	0		ENST00000485557.5_1_6:31939492-31939660:-|nuORF	ENST00000485557.5_1_6:31939492-31939660:-|nuORF	ENST00000485557.5_1_6:31939492-31939660:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	550.819807	1099.62506	0.049056	2.7021E-05	-2.5913	-0.0014273	-2.5422	-0.0014003	550.818359251494	13.323	0.17357	13.323	13.254	13.427	0	0.0047635	-0.00012961	NaN	1.8442	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19801			57484	11091	32908	32909							0.07923362556925895
WRLRGLNVS	9	Unmodified	_WRLRGLNVS_					0	0	0		ENST00000485557.5_1_6:31939492-31939660:-|nuORF	ENST00000485557.5_1_6:31939492-31939660:-|nuORF	ENST00000485557.5_1_6:31939492-31939660:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	550.819807	1099.62506	0.014866	8.1885E-06	-2.3437	-0.001291	-2.3288	-0.0012828	550.8185648414202	13.408	0.27883	13.341	13.189	13.468	-0.067496	0.022909	0.0001431	NaN	1.8442	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20698			57485	11091	32908	32909							0.07923362556925895
WRLSEWFLLRP	11	Unmodified	_WRLSEWFLLRP_					0	0	0		ENST00000598074.1_1_19:47226248-47228085:-|nuORF	ENST00000598074.1_1_19:47226248-47228085:-|nuORF	ENST00000598074.1_1_19:47226248-47228085:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7900695800781	3	501.613744	1501.8194	0.039457	1.9792E-05	0.4809	0.00024122	0.52035	0.00026102	501.61386964871804	14.297	0.25896	14.297	14.164	14.423	0					13	8	2	0	0	0	0.33348	1	693	693		0.40827	0	1	45226			57486	12237	32909	32910	70460	70460					0.08856693922211889
WRMNFLKL	8	Unmodified	_WRMNFLKL_					0	0	0		ENST00000440326.1_1_2:208104660-208104789:+|nuORF	ENST00000440326.1_1_2:208104660-208104789:+|nuORF	ENST00000440326.1_1_2:208104660-208104789:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3092651367188	2	554.310229	1106.60591	0.2431	0.00013475	-1.6661	-0.00092352	-1.423	-0.00078876	554.3090685696113	92.992	0.39883	92.992	92.749	93.148	0					76	31	3	0	0	0	0.39068	2	24764	24764;24799		20.454	6.5476	1	151100			57487	10549	32910	32911	70461;70462	70461					0.0568668994167183
WRMNFLKL	8	Unmodified	_WRMNFLKL_					0	0	0		ENST00000440326.1_1_2:208104660-208104789:+|nuORF	ENST00000440326.1_1_2:208104660-208104789:+|nuORF	ENST00000440326.1_1_2:208104660-208104789:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.809814453125	2	554.310229	1106.60591	0.30096	0.00016683	-1.405	-0.00077881	-1.1041	-0.00061199	554.3090012170164	92.849	0.50148	92.939	92.656	93.158	0.089203					107	43	3	0	0	0	0.42077	2	24694	24694;24712		15.847	1.9411	1	139640			57488	10549	32910	32911	70463;70464	70463					0.0568668994167183
WRMWSHDQWIP	11	Unmodified	_WRMWSHDQWIP_					0	0	0			REV__ENST00000278550.11_1_11:78366762-78366969:-|nuORF	REV__ENST00000278550.11_1_11:78366762-78366969:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.575439453125	3	514.575072	1540.70339	0.060697	3.1233E-05	0.19798	0.00010188	0.25868	0.00013311	514.5753828525765	18.664	1.5227	18.546	18.117	19.64	-0.11739					183	52	5	0	0	0	0.48247	1	2048	2048		0.40827	0	1	3793600	+		57489	19701	32911	32912	70465	70465					-0.04533572920149709
WRMWSHDQWIP	11	Unmodified	_WRMWSHDQWIP_					0	0	0			REV__ENST00000278550.11_1_11:78366762-78366969:-|nuORF	REV__ENST00000278550.11_1_11:78366762-78366969:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.5758056640625	3	514.575072	1540.70339	-0.15415	-7.9324E-05	0.43627	0.00022449	0.28211	0.00014517	514.5755395367968	18.631	1.5031	18.573	18.199	19.702	-0.058172					172	52	6	0	0	0	0.47633	3	1995	1945;1995;2044		1.2148	0	1	4488900	+		57490	19701	32911	32912	70466;70467;70468	70467					-0.04533572920149709
WRMYVVRRRYK	11	Unmodified	_WRMYVVRRRYK_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.64013671875	3	538.305028	1611.89325	0.078762	4.2398E-05	0.50619	0.00027249	0.58496	0.00031488	538.3052220635052	111.72	0.4843	111.72	111.65	112.13	0					105	60	2	0	0	0	0.48558	1	29056	29056		0	0	1	188690			57491	7973	32912	32913	70469	70469					0.11178338812896982
WRMYVVRRRYK	11	Unmodified	_WRMYVVRRRYK_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	538.305028	1611.89325	0.19513	0.00010504	0.7126	0.0003836	0.90774	0.00048864	538.3051138120279	111.87	0.33874	111.86	111.79	112.13	-0.015617	0.014141	0.0003486	NaN	0	79	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154080			57492	7973	32912	32913							0.11178338812896982
WRMYVVRRRYK	11	Unmodified	_WRMYVVRRRYK_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	538.305028	1611.89325	0.454	0.00024439	0.09642	5.1903E-05	0.55042	0.00029629	538.3049880013376	111.95	0.21339	111.96	111.81	112.02	0.013092	0.11483	-0.00064648	NaN	0	35	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158470			57493	7973	32912	32913							0.11178338812896982
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2835388183594	3	481.283503	1440.82868	0.16098	7.7477E-05	-0.084044	-4.0449E-05	0.076937	3.7028E-05	481.28337324082213	91.743	1.505	91.743	91.163	92.668	0					460	110	5	0	0	0	0.40943	1	24419	24419		1.7423	0.52744	1	2919000			57494	3616	32913	32914	70470	70470					0.12589900051079894
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2839660644531	3	481.283503	1440.82868	0.27201	0.00013091	-0.081552	-3.925E-05	0.19046	9.1664E-05	481.2833458946528	90.946	1.2551	91.036	90.048	91.303	0.090675					234	95	4	0	0	0	0.41805	1	23956	23956		0.15932	0.064481	1	2653600			57495	3616	32913	32914	70471	70471					0.12589900051079894
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2835388183594	3	481.283503	1440.82868	0.24196	0.00011645	-0.091805	-4.4184E-05	0.15015	7.2267E-05	481.28335677385866	91.829	1.6064	91.919	91.143	92.749	0.090668					418	111	4	0	0	0	0.40943	1	24564	24564		1.7423	0.52744	1	3408400			57496	3616	32913	32914	70472	70472					0.12589900051079894
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2834777832031	3	481.283503	1440.82868	0.18947	9.119E-05	0.082259	3.959E-05	0.27173	0.00013078	481.2835338027953	93.447	3.2005	93.533	92.695	95.896	0.086678					939	275	5	0	0	0	0.40943	7	24688	24688;24724;24762;24877;24996;25035;25075		1.7423	1.7423	1	7091700			57497	3616	32913	32914	70473;70474;70475;70476;70477;70478;70479	70473					0.12589900051079894
WRNRQKNKRR	10	Unmodified	_WRNRQKNKRR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2834167480469	3	481.283503	1440.82868	0.41585	0.00020014	-0.16719	-8.0464E-05	0.24866	0.00011968	481.28336500889986	91.099	1.2414	91.1	90.196	91.437	0.00046539					225	87	3	0	0	0	0.41512	2	24153	23965;24153		0.69767	0.69767	1	2089800			57498	3616	32913	32914	70480;70481	70481					0.12589900051079894
WRPPMYQRD	9	Unmodified	_WRPPMYQRD_					0	0	0		nc|ENSG00000056586|Q9HBD1-4|RC3H2;ENSG00000056586|ENST00000357244|RC3H2;nc|ENSG00000056586|Q9HBD1-6|RC3H2	nc|ENSG00000056586|Q9HBD1-4|RC3H2	nc|ENSG00000056586|Q9HBD1-4|RC3H2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.9029235839844	3	416.869597	1247.58696	0.012878	5.3685E-06	-2.6969	-0.0011243	-2.6841	-0.0011189	416.8682570127818	17.779	0.21037	17.662	17.515	17.726	-0.11739					8	6	2	0	0	0	0.26168	1	1751	1751		0.96228	0.18574	1	7909.5			57499	713	32914	32915	70482	70482					-0.026928914200425424
WRPPRRGRP	9	Unmodified	_WRPPRRGRP_					0	0	0			REV__ENSG00000174282|ENST00000380599|ZBTB4	REV__ENSG00000174282|ENST00000380599|ZBTB4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3431396484375	2	589.344315	1176.67408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.086	1	11.989	11.489	12.489	-0.096607								0	0	0	0.2672	1	24	24		0.52476	0	1		+		57500	17823	32915	32916	70483	70483					0.09280695636562086
WRRAHFRLWVF	11	Unmodified	_WRRAHFRLWVF_					0	0	0			REV__ENST00000554067.1_2_14:55657878-55658290:-|nuORF	REV__ENST00000554067.1_2_14:55657878-55658290:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2781372070312	3	525.293228	1572.85786	0.26528	0.00013935	2.0854	0.0010955	2.3507	0.0012348	525.2953505980889	22.733	0.72479	22.645	22.352	23.077	-0.087608					52	25	4	0	0	0	0.48486	1	3352	3352		0.094841	0	1	133210	+		57501	22229	32916	32917	70484	70484					0.09434044347381132
WRREHNPF	8	Unmodified	_WRREHNPF_					0	0	0		ENST00000520999.6_1_11:44881945-44919311:+|nuORF;ENST00000533080.5_1_11:44881945-44940814:+|nuORF;ENST00000533786.5_1_11:44881945-44931425:+|nuORF	ENST00000520999.6_1_11:44881945-44919311:+|nuORF	ENST00000520999.6_1_11:44881945-44919311:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.7485961914062	2	571.286131	1140.55771	0.31423	0.00017951	1.9282	0.0011016	2.2424	0.0012811	571.287528293897	62.372	0.47582	62.372	62.213	62.689	0					23	17	2	0	0	0	0.3366	1	15392	15392		18.135	0	1	255320			57502	11483	32917	32918	70485	70485					-0.006946676540110275
WRREKWHP	8	Unmodified	_WRREKWHP_					0	0	0			REV__ENST00000452365.1_1_2:177042557-177053160:-|nuORF	REV__ENST00000452365.1_1_2:177042557-177053160:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.819580078125	2	597.817599	1193.62064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.583	1	24.583	24.083	25.083	0								0	0	0	0.38004	1	3794	3794		0.69038	0.088878	1		+		57503	21126	32918	32919	70486	70486					0.031578981340317114
WRRLLCEVYML	11	Unmodified	_WRRLLCEVYML_					0	0	0			REV__ADCY7|p.L774Rfs*22|1|0.3|ENSG00000121281|chr16:50310847-50310847|T/-|frameshift_variant	REV__ADCY7|p.L774Rfs*22|1|0.3|ENSG00000121281|chr16:50310847-50310847|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7843933105469	3	494.596709	1480.7683	0.2166	0.00010713	-0.93388	-0.0004619	-0.71728	-0.00035477	494.59620895634225	57.476	0.70415	57.459	57.17	57.874	-0.0172					44	25	2	0	0	0	0.33296	1	13892	13892		2.6312	2.6312	1	718850	+		57504	13081	32919	32920	70487	70487					0.047142855614993096
WRRLQRRFEQR	11	Unmodified	_WRRLQRRFEQR_					0	0	0			REV__ENST00000403729.6_1_4:80993792-80994179:-|nuORF	REV__ENST00000403729.6_1_4:80993792-80994179:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.7971801757812	3	544.309829	1629.90766	0.56101	0.00030536	1.148	0.00062488	1.709	0.00093024	544.6447853471645	89.436	0.45801	89.436	89.253	89.711	0					41	27	2	0	0	0	0.33352	1	23691	23691		0	0	1	134410	+		57505	20722	32920	32921	70488	70488					0.11790127285394192
WRRLQRRFEQR	11	Unmodified	_WRRLQRRFEQR_					0	0	0			REV__ENST00000403729.6_1_4:80993792-80994179:-|nuORF	REV__ENST00000403729.6_1_4:80993792-80994179:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7974243164062	3	544.309829	1629.90766	0.65596	0.00035704	1.1388	0.00061984	1.7947	0.00097688	544.3103761870091	89.242	0.54227	89.333	89.122	89.664	0.090569					50	32	2	0	0	0	0.33352	1	23694	23694		0	0	1	122820	+		57506	20722	32920	32921	70489	70489					0.11790127285394192
WRRRRAAR	8	Unmodified	_WRRRRAAR_					0	0	0		ENST00000416904.4_1_12:53574525-53575604:+|nuORF	ENST00000416904.4_1_12:53574525-53575604:+|nuORF	ENST00000416904.4_1_12:53574525-53575604:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.3414306640625	2	564.342107	1126.66966	0.11001	6.2085E-05	-1.148	-0.00064784	-1.0379	-0.00058575	564.3413674097762	16.149	0.48646	16.149	15.918	16.405	0					30	16	3	0	0	0	0.46491	1	1225	1225		0.69038	0	1	72874			57507	10324	32921	32922	70490	70490					0.11139231213633138
WRRRRAAR	8	Unmodified	_WRRRRAAR_					0	0	0		ENST00000416904.4_1_12:53574525-53575604:+|nuORF	ENST00000416904.4_1_12:53574525-53575604:+|nuORF	ENST00000416904.4_1_12:53574525-53575604:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.802001953125	2	564.342107	1126.66966	0.16768	9.4631E-05	-1.1027	-0.00062231	-0.93503	-0.00052768	564.3414979693108	16.304	0.41107	16.19	15.95	16.362	-0.11434					28	13	3	0	0	0	0.34437	1	1318	1318		0.69038	0	1	61981			57508	10324	32921	32922	70491	70491					0.11139231213633138
WRRRSSRQ	8	Unmodified	_WRRRSSRQ_					0	0	0			REV__ENST00000361887.5_2_X:152157706-152158048:-|nuORF	REV__ENST00000361887.5_2_X:152157706-152158048:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.8142700195312	2	566.315755	1130.61696	-0.088191	-4.9944E-05	-0.14583	-8.2584E-05	-0.23402	-0.00013253	566.3156095978335	12.629	0.28854	12.629	12.526	12.815	0					14	9	2	0	0	0	0.34437	1	194	194		0.69038	0	1	55660	+		57509	20289	32922	32923	70492	70492					0.05687228360170593
WRRWPTNWL	9	Unmodified	_WRRWPTNWL_					0	0	0		ENST00000393533.6_2_9:131231627-131233701:+|nuORF	ENST00000393533.6_2_9:131231627-131233701:+|nuORF	ENST00000393533.6_2_9:131231627-131233701:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.56201171875	3	438.899996	1313.67816	-0.3205	-0.00014067	1.4136	0.00062043	1.0931	0.00047977	438.90050874367137	13.148	0.5063	13.08	12.936	13.443	-0.067496					41	17	5	0	0	0	0.26245	1	321	321		0.96228	0.80295	1	157780			57510	10050	32923	32924	70493	70493					0.03386740339624339
WRRWRKRWRRR	11	Unmodified	_WRRWRKRWRRR_					0	0	0			REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF	REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3584594726562	3	600.024358	1797.05124	0.34782	0.0002087	-3.2612	-0.0019568	-2.9134	-0.0017481	600.0217190526346	93.886	0.27579	93.886	93.696	93.971	0					21	18	2	0	0	0	0.48558	1	24987	24987		0	0	1	54141	+		57511	19593	32924	32925	70494	70494					0.1846001890696698
WRSRMILL	8	Unmodified	_WRSRMILL_					0	0	0		SFRP4|p.M266I|1|0.23|ENSG00000106483|chr7:37909674-37909674|C/A|missense_variant	SFRP4|p.M266I|1|0.23|ENSG00000106483|chr7:37909674-37909674|C/A|missense_variant	SFRP4|p.M266I|1|0.23|ENSG00000106483|chr7:37909674-37909674|C/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.8075561523438	2	537.815679	1073.6168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.822	1	92.822	92.322	93.322	0.00046539								0	0	0	0.34229	1	24697	24697		18.135	0	1				57512	23377	32925	32926	70495	70495					0.08294092315986745
WRSTQPHVP	9	Unmodified	_WRSTQPHVP_					0	0	0		FLCN|p.F417Sfs*51|1|0.32|ENSG00000154803|chr17:17216430-17216430|A/-|frameshift_variant	FLCN|p.F417Sfs*51|1|0.32|ENSG00000154803|chr17:17216430-17216430|A/-|frameshift_variant	FLCN|p.F417Sfs*51|1|0.32|ENSG00000154803|chr17:17216430-17216430|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.2890625	2	554.28834	1106.56213	0.39314	0.00021791	2.0312	0.0011258	2.4243	0.0013438	554.2890689014114	20.477	0.58978	20.477	20.235	20.825	0					30	20	2	0	0	0	0.33508	1	2612	2612		3.5965	1.7523	1	51244			57513	12343	32926	32927	70496	70496					0.013107967688711142
WRVGFFTL	8	Unmodified	_WRVGFFTL_					0	0	0		nc|ENSG00000188162|Q6ZRI0-2|OTOG;ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0|OTOG	nc|ENSG00000188162|Q6ZRI0-2|OTOG	nc|ENSG00000188162|Q6ZRI0-2|OTOG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.7664794921875	2	513.281995	1024.54944	0.24819	0.00012739	-0.12354	-6.3411E-05	0.12465	6.398E-05	513.282039358994	71.121	0.50394	71.182	70.987	71.491	0.060783					28	17	2	0	0	0	0.43302	1	18056	18056		11.64	1.4569	1	513970			57514	7733	32927	32928	70497	70497					0.038143853766541724
WRVRARPR	8	Unmodified	_WRVRARPR_					0	0	0		ENST00000552014.5_1_12:113770667-113772302:-|nuORF	ENST00000552014.5_1_12:113770667-113772302:-|nuORF	ENST00000552014.5_1_12:113770667-113772302:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.8027954101562	2	548.833583	1095.65261	0.25814	0.00014167	-1.0322	-0.00056651	-0.77408	-0.00042484	548.8329665716226	31.115	0.4079	31.143	30.924	31.332	0.027946					21	14	2	0	0	0	0.3366	1	5747	5747		18.135	0	1	102720			57515	11807	32928	32929	70498	70498					0.1086131060783373
WRVRVHRLRR	10	Unmodified	_WRVRVHRLRR_					0	0	0		ENST00000264220.6_1_4:57273852-57301749:-|nuORF	ENST00000264220.6_1_4:57273852-57301749:-|nuORF	ENST00000264220.6_1_4:57273852-57301749:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.2635498046875	3	478.632355	1432.87524	0.005211	2.4941E-06	0.75687	0.00036226	0.76208	0.00036475	478.63280426525233	31.22	0.52826	31.22	30.948	31.476	0					37	18	3	0	0	0	0.32174	1	5803	5803		0.15932	0.15932	1	233640			57516	9023	32929	32930	70499	70499					0.17611384673045904
WRWRERLAA	9	Unmodified	_WRWRERLAA_					0	0	0		ENST00000491735.1_1_10:1094807-1094981:-|nuORF	ENST00000491735.1_1_10:1094807-1094981:-|nuORF	ENST00000491735.1_1_10:1094807-1094981:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.8137817382812	2	622.343981	1242.67341	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.685	1	89.776	89.276	90.276	0.090569								0	0	0	0.264	1	23736	23736		1.8442	0.77278	1				57517	11184	32930	32931	70500	70500					0.061778561968367285
WRWRWSRMLRR	11	Unmodified	_WRWRWSRMLRR_					0	0	0			REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF	REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.6444702148438	3	563.644155	1687.91064	0.10351	5.8342E-05	0.56471	0.0003183	0.66822	0.00037664	563.9788278805788	14.738	0.59175	14.633	14.396	14.988	-0.10466					60	20	5	0	0	0	0.48558	1	812	812		0	0	1	1250800	+		57518	20800	32931	32932	70501	70501					0.09419679138545689
WSAAPHPIWPV	11	Unmodified	_WSAAPHPIWPV_					0	0	0			REV__nc|ENSG00000182446|Q8TAT6-2|NPLOC4	REV__nc|ENSG00000182446|Q8TAT6-2|NPLOC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.8670349121094	3	420.888986	1259.64513	0.072528	3.0526E-05	-0.17639	-7.4242E-05	-0.10387	-4.3716E-05	420.8886001699902	29.456	0.94796	29.468	29	29.948	0.012266					64	32	3	0	0	0	0.329	1	5312	5312		4.7159	0	1	179340	+		57519	23121	32932	32933	70502	70502					0.02569113496861064
WSCDHKQNITY	11	Unmodified	_WSCDHKQNITY_					0	0	0		ENSG00000126861|ENST00000247271|OMG	ENSG00000126861|ENST00000247271|OMG	ENSG00000126861|ENST00000247271|OMG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.5432434082031	3	465.543438	1393.60848	-0.080133	-3.7305E-05	-0.68162	-0.00031732	-0.76175	-0.00035463	465.5432648449265	16.731	0.91293	16.731	16.405	17.318	0					90	31	4	0	0	0	0.48307	1	1492	1492		0.32927	0.16995	1	556160			57520	3297	32933	32934	70503	70503					-0.07257551181987765
WSDCYPQFR	9	Unmodified	_WSDCYPQFR_					0	0	0			REV__ENSG00000089775|ENST00000608382|ZBTB25	REV__ENSG00000089775|ENST00000608382|ZBTB25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.8162231445312	2	601.258391	1200.50223	0.57126	0.00034347	1.6126	0.0009696	2.1839	0.0013131	601.2616929443528	51.235	0.44268	51.282	51.037	51.479	0.046574					35	16	3	0	0	0	0.25202	1	11948	11948		6.7232	0	1	286580	+		57521	14032	32934	32935	70504	70504					-0.09000261956657596
WSDLHNLS	8	Unmodified	_WSDLHNLS_					0	0	0		ENSG00000129009|ENST00000249842|ISLR	ENSG00000129009|ENST00000249842|ISLR	ENSG00000129009|ENST00000249842|ISLR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2213439941406	2	486.232699	970.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.317	1	30.317	29.817	30.817	0								0	0	0	0.35663	1	5533	5533		11.64	0	1				57522	3406	32935	32936	70505	70505					-0.03556262659060394
WSDMSVYK	8	Unmodified	_WSDMSVYK_					0	0	0			REV__ENSG00000138653|ENST00000264363|NDST4	REV__ENSG00000138653|ENST00000264363|NDST4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.23260498046875	2	508.23131	1014.44807	0.2725	0.00013849	3.9123	0.0019884	4.1848	0.0021269	508.23303279854525	21.958	0.85086	21.958	21.401	22.252	0					39	30	2	0	0	0	0.39068	1	2974	2974		20.454	3.5113	1	121610	+		57523	15940	32936	32937	70506	70506					-0.05857854108216998
WSERPTLHHL	10	Unmodified	_WSERPTLHHL_					0	0	0			REV__ENST00000337338.9_1_1:90400945-90401131:+|nuORF	REV__ENST00000337338.9_1_1:90400945-90401131:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.3309936523438	2	638.333279	1274.652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.199	1	90.199	89.699	90.699	0								0	0	0	0.38126	1	23900	23900		1.6526	0.17072	1		+		57524	20083	32937	32938	70507	70507					0.025664263774842766
WSERPTLHHL	10	Unmodified	_WSERPTLHHL_					0	0	0			REV__ENST00000337338.9_1_1:90400945-90401131:+|nuORF	REV__ENST00000337338.9_1_1:90400945-90401131:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	638.8021240234375	2	638.333279	1274.652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.993	1	92.993	92.493	93.493	0								0	0	0	0.38126	1	24754	24754		1.6526	0.17072	1		+		57525	20083	32937	32938	70508	70508					0.025664263774842766
WSFNQLGR	8	Unmodified	_WSFNQLGR_					0	0	0			REV__ENST00000374910.3_1_X:57146877-57147708:-|nuORF	REV__ENST00000374910.3_1_X:57146877-57147708:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7410583496094	2	504.256508	1006.49846	0.38627	0.00019478	-1.0159	-0.00051226	-0.62961	-0.00031749	504.2561504257071	30.436	0.3658	30.436	30.282	30.648	0					23	12	3	0	0	0	0.44569	1	5575	5575		7.2892	0.56607	1	113510	+		57526	19693	32938	32939	70509	70509					-0.004525636681933065
WSFRGHWRGG	10	Unmodified	_WSFRGHWRGG_					0	0	0		ENST00000554614.2_1_14:73711044-73711323:-|nuORF	ENST00000554614.2_1_14:73711044-73711323:-|nuORF	ENST00000554614.2_1_14:73711044-73711323:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.849365234375	2	623.304855	1244.59516	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.184	1	92.184	91.684	92.684	0.00046539								0	0	0	0.38166	1	24502	24502		1.4819	0	1				57527	11835	32939	32940	70510	70510					-0.01735576388409754
WSHTSTLGIML	11	Unmodified	_WSHTSTLGIML_					0	0	0		ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENST00000537120.5_1_11:61091345-61100440:-|nuORF	ENST00000537120.5_1_11:61091345-61100440:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.8812561035156	3	415.881391	1244.62234	-0.50029	-0.00020806	-1.5805	-0.0006573	-2.0808	-0.00086536	415.8810575232335	34.595	0.7241	34.673	34.336	35.06	0.077381					70	25	4	0	0	0	0.40701	1	6876	6876		10.315	1.339	1	310630			57528	11688	32940	32941	70511	70511					0.009817263171044033
WSIPRPSFL	9	Unmodified	_WSIPRPSFL_					0	0	0			REV__ENST00000503937.5_1_4:83740135-83740261:-|nuORF	REV__ENST00000503937.5_1_4:83740135-83740261:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8062133789062	2	551.805834	1101.59712	0.53139	0.00029322	0.19951	0.00011009	0.7309	0.00040332	551.805734486749	64.471	1.2451	64.461	64.045	65.29	-0.0095291					93	45	3	0	0	0	0.19747	1	15995	15995		24.021	2.2739	1	1005500	+		57529	21727	32941	32942	70512	70512					0.05038039576857045
WSKRMLLGV	9	Unmodified	_WSKRMLLGV_					0	0	0		ENST00000396987.7_1_8:41478532-41478793:+|nuORF	ENST00000396987.7_1_8:41478532-41478793:+|nuORF	ENST00000396987.7_1_8:41478532-41478793:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3179931640625	2	545.315512	1088.61647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.41	1	112.4	111.9	112.9	-0.015625								0	0	0	0.264	1	29240	29240		1.8442	0.36234	1				57530	10128	32942	32943	70513	70513					0.07570672596125405
WSLFYMLVE	9	Unmodified	_WSLFYMLVE_					0	0	0		nc|ENSG00000146216|Q5TCY1-2|TTBK1;ENSG00000146216|ENST00000259750|TTBK1;nc|ENSG00000128881|Q6IQ55-3|TTBK2;nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000146216|Q5TCY1-2|TTBK1;nc|ENSG00000128881|Q6IQ55-3|TTBK2	nc|ENSG00000146216|Q5TCY1-2|TTBK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.7354736328125	2	594.293911	1186.57327	0.52893	0.00031434	-0.17336	-0.00010303	0.35556	0.00021131	594.7951674493366	60.931	0.11566	61.028	60.978	61.093	0.096985					6	3	2	0	0	0	0.25066	1	14947	14947		11.64	0.81637	1	435380			57531	4699;3396	32943	32944	70514	70514					-0.012555619718568778
WSLGPWSQCF	10	Unmodified	_WSLGPWSQCF_					0	0	0		ADAMTS18|p.S1004F|1|0.16|ENSG00000140873|chr16:77293254-77293254|G/A|missense_variant	ADAMTS18|p.S1004F|1|0.16|ENSG00000140873|chr16:77293254-77293254|G/A|missense_variant	ADAMTS18|p.S1004F|1|0.16|ENSG00000140873|chr16:77293254-77293254|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.1832580566406	3	404.183181	1209.52771	0.055649	2.2492E-05	-0.0087005	-3.5166E-06	0.046948	1.8976E-05	404.1831319996134	45.223	1.1155	45.223	44.829	45.945	0					109	40	4	0	0	0	0.38515	2	10128	10128;10179		3.3196	1.99	1	750320			57532	11	32944	32945	70515;70516	70515					-0.06866787434228172
WSLGPWSQCF	10	Unmodified	_WSLGPWSQCF_					0	0	0		ADAMTS18|p.S1004F|1|0.16|ENSG00000140873|chr16:77293254-77293254|G/A|missense_variant	ADAMTS18|p.S1004F|1|0.16|ENSG00000140873|chr16:77293254-77293254|G/A|missense_variant	ADAMTS18|p.S1004F|1|0.16|ENSG00000140873|chr16:77293254-77293254|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.1832580566406	3	404.183181	1209.52771	-0.039058	-1.5786E-05	-0.046858	-1.8939E-05	-0.085915	-3.4726E-05	404.1831707409271	44.902	1.1129	44.971	44.599	45.712	0.068569					105	39	4	0	0	0	0.38515	2	9975	9975;10026		3.3196	3.3196	1	880110			57533	11	32944	32945	70517;70518	70517					-0.06866787434228172
WSLGPWSQCF	10	Unmodified	_WSLGPWSQCF_					0	0	0		ADAMTS18|p.S1004F|1|0.16|ENSG00000140873|chr16:77293254-77293254|G/A|missense_variant	ADAMTS18|p.S1004F|1|0.16|ENSG00000140873|chr16:77293254-77293254|G/A|missense_variant	ADAMTS18|p.S1004F|1|0.16|ENSG00000140873|chr16:77293254-77293254|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.1834411621094	3	404.183181	1209.52771	0.038293	1.5477E-05	0.091644	3.7041E-05	0.12994	5.2518E-05	404.18318972082034	44.864	1.1232	44.939	44.669	45.792	0.07505					94	41	3	0	0	0	0.38515	2	9957	9957;10014		3.3196	0	1	967180			57534	11	32944	32945	70519;70520	70519					-0.06866787434228172
WSLHLPLLLF	10	Unmodified	_WSLHLPLLLF_					0	0	0		ENST00000370220.1_1_10:102759899-102760451:+|nuORF	ENST00000370220.1_1_10:102759899-102760451:+|nuORF	ENST00000370220.1_1_10:102759899-102760451:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.867431640625	2	619.868434	1237.72232	0.26923	0.00016689	-1.0047	-0.00062278	-0.73547	-0.0004559	619.8671842063876	91.119	0.066322	91.119	91.097	91.163	0					6	4	2	0	0	0	0.40992	1	24188	24188		1.6526	0	1	177080			57535	9793	32945	32946	70521	70521					0.11296331713219843
WSLHLPLLLF	10	Unmodified	_WSLHLPLLLF_					0	0	0		ENST00000370220.1_1_10:102759899-102760451:+|nuORF	ENST00000370220.1_1_10:102759899-102760451:+|nuORF	ENST00000370220.1_1_10:102759899-102760451:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	619.868434	1237.72232	0.35647	0.00022096	-2.4633	-0.0015269	-2.1068	-0.0013059	619.866551784605	91.229	0.11029	91.23	91.193	91.303	0.00046539	0.055276	-0.00058691	NaN	1.6526	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318080			57536	9793	32945	32946							0.11296331713219843
WSLPSPRFL	9	Unmodified	_WSLPSPRFL_					0	0	0		ENST00000216044.9_1_22:39127397-39127706:+|nuORF	ENST00000216044.9_1_22:39127397-39127706:+|nuORF	ENST00000216044.9_1_22:39127397-39127706:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8059692382812	2	551.805834	1101.59712	0.58453	0.00032255	0.042118	2.3241E-05	0.62665	0.00034579	551.8057047026017	64.42	0.93435	64.42	64.053	64.988	0					81	34	3	0	0	0	0.23007	1	15984	15984		19.257	0	1	1109900			57537	8810	32946	32947	70522	70522					0.05038039576857045
WSLPSPRFL	9	Unmodified	_WSLPSPRFL_					0	0	0		ENST00000216044.9_1_22:39127397-39127706:+|nuORF	ENST00000216044.9_1_22:39127397-39127706:+|nuORF	ENST00000216044.9_1_22:39127397-39127706:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8060913085938	2	551.805834	1101.59712	0.53139	0.00029322	0.19951	0.00011009	0.7309	0.00040332	551.805734486749	64.471	1.2451	64.461	64.045	65.29	-0.0095291					93	45	3	0	0	0	0.23007	1	16010	16010		19.257	19.257	1	1005500			57538	8810	32946	32947	70523	70523					0.05038039576857045
WSLTEDEGCLL	11	Unmodified	_WSLTEDEGCLL_					0	0	0			REV__ENST00000293880.9_1_11:57098199-57100416:-|nuORF	REV__ENST00000293880.9_1_11:57098199-57100416:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.8963317871094	3	422.528794	1264.56455	0.016293	6.8841E-06	3.5848	0.0015147	3.6011	0.0015216	422.5314316269889	40.612	0.13369	40.711	40.617	40.75	0.099407					5	4	2	0	0	0	0.329	1	8676	8676		4.7159	0	1	43820	+		57539	19768	32947	32948	70524	70524					-0.057145803989442356
WSQKRMRP	8	Unmodified	_WSQKRMRP_					0	0	0		ENST00000588797.5_1_19:44335486-44351150:+|nuORF	ENST00000588797.5_1_19:44335486-44351150:+|nuORF	ENST00000588797.5_1_19:44335486-44351150:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7921752929688	2	544.792735	1087.57092	0.55308	0.00030131	-0.38116	-0.00020765	0.17192	9.366E-05	544.7918462196554	118.74	0.18052	118.76	118.73	118.91	0.026253					34	22	2	0	0	0	0.34414	1	30769	30769		2.0598	0	1	22823			57540	12150	32948	32949	70525	70525					0.030634471337180003
WSQNNAKF	8	Unmodified	_WSQNNAKF_					0	0	0		nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF;IFT172|p.E810Nfs*30|1|0.18|ENSG00000138002|chr2:27461283-27461283|C/-|frameshift_variant;ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172;ENST00000475476.2_1_2:27707060-27712589:-|nuORF;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;IFT172|p.L286Tfs*42|1|0.19|ENSG00000138002|chr2:27480076-27480079|ATAA/-|frameshift_variant	nc|ENSG00000138002|Q9UG01-3|IFT172	nc|ENSG00000138002|Q9UG01-3|IFT172	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2538146972656	2	497.740691	993.466829	0.17532	8.7266E-05	0.015533	7.7312E-06	0.19086	9.4997E-05	497.74076515818	15.668	0.31656	15.558	15.38	15.696	-0.10981					13	10	2	0	0	0	0.34337	1	1072	1072		5.2307	0	1	19347			57541	4104	32949	32950	70526	70526					-0.030165564221533714
WSRDIAPQAVL	11	Unmodified	_WSRDIAPQAVL_					0	0	0		ENST00000523167.1_1_8:101300446-101321650:-|nuORF	ENST00000523167.1_1_8:101300446-101321650:-|nuORF	ENST00000523167.1_1_8:101300446-101321650:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	628.8449096679688	2	628.343312	1254.67207	0.13782	8.6595E-05	0.22847	0.00014356	0.36629	0.00023016	628.3434181315338	57.342	0.60579	57.428	57.132	57.738	0.085621					51	21	4	0	0	0	0.35271	1	13848	13848		17.443	1.2935	1	1229800			57542	11507	32950	32951	70527	70527					0.05492177317410096
WSRDIAPQAVL	11	Unmodified	_WSRDIAPQAVL_					0	0	0		ENST00000523167.1_1_8:101300446-101321650:-|nuORF	ENST00000523167.1_1_8:101300446-101321650:-|nuORF	ENST00000523167.1_1_8:101300446-101321650:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.8450927734375	2	628.343312	1254.67207	0.12067	7.5819E-05	0.2866	0.00018008	0.40726	0.0002559	628.3434649611172	57.561	0.6425	57.544	57.285	57.928	-0.0172					50	23	3	0	0	0	0.32531	1	13879	13879		22.658	22.658	1	1166600			57543	11507	32950	32951	70528	70528					0.05492177317410096
WSRQDDID	8	Unmodified	_WSRQDDID_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.2567138671875	2	517.73052	1033.44649	0.37074	0.00019194	0.19493	0.00010092	0.56566	0.00029286	517.7308838767693	46.402	0.32856	46.455	46.326	46.655	0.052574					14	11	2	0	0	0	0.34131	1	10505	10505		12.532	0.89125	1	193030			57544	6120	32951	32952	70529	70529					-0.06889771872624806
WSRQDDID	8	Unmodified	_WSRQDDID_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	517.73052	1033.44649	0.27753	0.00014369	0.71316	0.00036923	0.9907	0.00051291	517.7309069939299	46.594	0.3007	46.594	46.402	46.703	0	0.099206	-1.6389E-05	NaN	12.532	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186070			57545	6120	32951	32952							-0.06889771872624806
WSRRFRFR	8	Unmodified	_WSRRFRFR_					0	0	0		ENSG00000183760|ENST00000331256|ACP7	ENSG00000183760|ENST00000331256|ACP7	ENSG00000183760|ENST00000331256|ACP7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.8388671875	2	605.838865	1209.66318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.052	1	11.984	11.484	12.484	-0.06806								0	0	0	0.38083	1	11	11		0	0	1				57546	7400	32952	32953	70530	70530					0.06673293262269908
WSSNAYFI	8	Unmodified	_WSSNAYFI_					0	0	0			REV__ENST00000368445.9_1_1:154935706-154935994:-|nuORF	REV__ENST00000368445.9_1_1:154935706-154935994:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7906494140625	2	494.232168	986.449782	0.09616	4.7526E-05	-0.4083	-0.00020179	-0.31214	-0.00015427	494.23193132214357	12.67	0.29347	12.571	12.407	12.7	-0.099291					13	9	2	0	0	0	0.34434	1	157	157		0.79363	0	1	22620	+		57547	20341	32953	32954	70531	70531					-0.043984770279621443
WSSNAYFI	8	Unmodified	_WSSNAYFI_					0	0	0			REV__ENST00000368445.9_1_1:154935706-154935994:-|nuORF	REV__ENST00000368445.9_1_1:154935706-154935994:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	494.232168	986.449782	0.049451	2.444E-05	-0.42243	-0.00020878	-0.37298	-0.00018434	494.23195491875884	12.736	0.20132	12.736	12.582	12.783	0	0.082807	-4.5013E-06	NaN	0.79363	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17694	+		57548	20341	32953	32954							-0.043984770279621443
WSSRSLVSLPL	11	Unmodified	_WSSRSLVSLPL_					0	0	0		ENST00000291439.7_1_19:16345250-16345541:+|nuORF	ENST00000291439.7_1_19:16345250-16345541:+|nuORF	ENST00000291439.7_1_19:16345250-16345541:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8539428710938	2	622.853512	1243.69247	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.35	1	106.35	105.85	106.85	0.0050507								0	0	0	0.36137	1	28158	28158		5.7319	0	1				57549	9157	32954	32955	70532	70532					0.08037347977233367
WSVLEPPLF	9	Unmodified	_WSVLEPPLF_					0	0	0		nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69747892-69752485:-|nuORF;nc|ENSG00000148634|Q5GLZ8-3|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.79296875	2	544.294768	1086.57498	0.63839	0.00034747	-2.2187	-0.0012076	-1.5804	-0.00086018	544.296434606549	77.012	1.461	77.012	76.31	77.771	0					111	53	3	0	0	0	0.26879	1	19826	19826		13.508	0.97634	1	284600			57550	4821	32955	32956	70533	70533					0.03515815108403331
WSWWARVL	8	Unmodified	_WSWWARVL_					0	0	0			REV__ENST00000333055.8_1_5:180218084-180218396:-|nuORF	REV__ENST00000333055.8_1_5:180218084-180218396:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7994384765625	2	552.292894	1102.57123	0.43101	0.00023804	3.2032	0.0017691	3.6342	0.0020071	552.2938603350623	53.887	0.94795	53.943	53.585	54.533	0.056255					88	33	3	0	0	0	0.41758	1	12842	12842		16.942	2.104	1	1697300	+		57551	20053	32956	32957	70534	70534					0.024051901252278185
WSWYEWYRWR	10	Unmodified	_WSWYEWYRWR_					0	0	0			REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF	REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.9120178222656	4	405.190106	1616.73132	-0.25061	-0.00010154	3.3131	0.0013425	3.0625	0.0012409	405.1913842817357	24.96	0.32918	24.904	24.719	25.048	-0.055931					13	11	2	0	0	0	0.32175	1	3938	3938		0.13989	0.04505	1	33735	+		57552	19811	32957	32958	70535	70535					-0.05237926668428372
WTEIGLIV	8	Unmodified	_WTEIGLIV_					0	0	0		nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;nc|ENSG00000165525|O60524-5|NEMF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF	nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-4|NEMF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.7681884765625	2	465.768386	929.522219	0.44309	0.00020638	-0.094289	-4.3917E-05	0.3488	0.00016246	465.76814061890974	78.074	0.89444	78.074	77.691	78.586	0					66	33	3	0	0	0	0.17761	2	20161	20161;20219		46.921	18.434	1	417300			57553	5972	32958	32959	70536;70537	70536					0.05463857045617715
WTEIGLIV	8	Unmodified	_WTEIGLIV_					0	0	0		nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;nc|ENSG00000165525|O60524-5|NEMF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF	nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-4|NEMF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7684020996094	2	465.768386	929.522219	0.35712	0.00016633	-0.15309	-7.1307E-05	0.20402	9.5028E-05	465.7681190649182	78.02	0.9953	78.078	77.741	78.736	0.058151					70	36	3	0	0	0	0.21281	1	20135	20135		56.541	20.497	1	482450			57554	5972	32958	32959	70538	70538					0.05463857045617715
WTEIGLIV	8	Unmodified	_WTEIGLIV_					0	0	0		nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;nc|ENSG00000165525|O60524-5|NEMF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF	nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-4|NEMF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.7685852050781	2	465.768386	929.522219	0.17549	8.1737E-05	0.34848	0.00016231	0.52397	0.00024405	465.76841514255074	83.267	0.68231	83.34	83.052	83.734	0.073097					43	25	3	0	0	0	0.3366	1	21795	21795		18.135	2.2878	1	414310			57555	5972	32958	32959	70539	70539					0.05463857045617715
WTEIGLIV	8	Unmodified	_WTEIGLIV_					0	0	0		nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;nc|ENSG00000165525|O60524-5|NEMF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF	nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-4|NEMF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.76824951171875	2	465.768386	929.522219	0.73162	0.00034077	-0.59654	-0.00027785	0.13509	6.2919E-05	465.76791137489107	78.06	0.9807	78.029	77.705	78.686	-0.030434					71	36	3	0	0	0	0.17761	1	20158	20158		46.921	18.434	1	608800			57556	5972	32958	32959	70540	70540					0.05463857045617715
WTKFSRRV	8	Unmodified	_WTKFSRRV_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.79833984375	2	540.309075	1078.6036	0.12203	6.5932E-05	1.7096	0.00092371	1.8316	0.00098965	540.3099175186092	12.381	0.18784	12.381	12.245	12.433	0					8	5	2	0	0	0	0.34434	1	111	111		0.79363	0.19213	1	30812	+		57557	18080	32959	32960	70541	70541					0.06743977528230971
WTKFSRRV	8	Unmodified	_WTKFSRRV_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	540.309075	1078.6036	0.18856	0.00010188	1.8285	0.00098794	2.017	0.0010898	540.3099382458304	12.377	0.14948	12.28	12.206	12.356	-0.096607	-0.05028	6.2386E-05	NaN	0.79363	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30767	+		57558	18080	32959	32960							0.06743977528230971
WTNDIVNVK	9	Unmodified	_WTNDIVNVK_					0	0	0			REV__nc|ENSG00000177034|Q5HYI7-4|MTX3	REV__nc|ENSG00000177034|Q5HYI7-4|MTX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.271484375	2	544.790381	1087.56621	0.13707	7.4676E-05	2.2062	0.0012019	2.3433	0.0012766	544.7916939250376	13.471	0.28785	13.471	13.309	13.597	0					11	9	2	0	0	0	0.26099	1	461	461		2.9952	0.69251	1	40043	+		57559	17968	32960	32961	70542	70542					0.025928414719373905
WTNFFKLR	8	Unmodified	_WTNFFKLR_					0	0	0		ENSG00000144815|ENST00000273347|NXPE3	ENSG00000144815|ENST00000273347|NXPE3	ENSG00000144815|ENST00000273347|NXPE3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3058471679688	2	556.306001	1110.59745	0.24242	0.00013486	-0.21593	-0.00012013	0.026485	1.4734E-05	556.3061127883777	16.78	0.5197	16.78	16.521	17.041	0					34	17	3	0	0	0	0.45307	1	1465	1465		4.756	0	1	95369			57560	4613	32961	32962	70543	70543					0.04657459296709021
WTNFFKLR	8	Unmodified	_WTNFFKLR_					0	0	0		ENSG00000144815|ENST00000273347|NXPE3	ENSG00000144815|ENST00000273347|NXPE3	ENSG00000144815|ENST00000273347|NXPE3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	556.306001	1110.59745	0.2756	0.00015332	-0.2124	-0.00011816	0.063197	3.5157E-05	556.3059765894096	16.741	0.6083	16.678	16.468	17.077	-0.062534	-0.04351	-8.8522E-05	NaN	4.756	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105310			57561	4613	32961	32962							0.04657459296709021
WTRKLMKF	8	Unmodified	_WTRKLMKF_					0	0	0		ENST00000446285.5_1_2:10584666-10585103:-|nuORF;ENST00000405333.5_1_2:10584727-10585148:-|nuORF	ENST00000446285.5_1_2:10584666-10585103:-|nuORF	ENST00000446285.5_1_2:10584666-10585103:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7969970703125	2	555.318054	1108.62156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.44	1	114.44	113.94	114.94	0								0	0	0	0.37664	1	29691	29691		2.5775	0.51773	1				57562	10217	32962	32963	70544	70544					0.07158976458731559
WTRKLMKF	8	Unmodified	_WTRKLMKF_					0	0	0		ENST00000446285.5_1_2:10584666-10585103:-|nuORF;ENST00000405333.5_1_2:10584727-10585148:-|nuORF	ENST00000446285.5_1_2:10584666-10585103:-|nuORF	ENST00000446285.5_1_2:10584666-10585103:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7965087890625	2	555.318054	1108.62156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.25	1	115.25	114.75	115.75	0								0	0	0	0.37078	1	29873	29873		5.2307	2.4955	1				57563	10217	32962	32963	70545	70545					0.07158976458731559
WTRKLMKF	8	Unmodified	_WTRKLMKF_					0	0	0		ENST00000446285.5_1_2:10584666-10585103:-|nuORF;ENST00000405333.5_1_2:10584727-10585148:-|nuORF	ENST00000446285.5_1_2:10584666-10585103:-|nuORF	ENST00000446285.5_1_2:10584666-10585103:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7954711914062	2	555.318054	1108.62156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.38	1	117.38	116.88	117.88	0								0	0	0	0.37664	1	30359	30359		2.5775	0.51773	1				57564	10217	32962	32963	70546	70546					0.07158976458731559
WTRKLMKF	8	Unmodified	_WTRKLMKF_					0	0	0		ENST00000446285.5_1_2:10584666-10585103:-|nuORF;ENST00000405333.5_1_2:10584727-10585148:-|nuORF	ENST00000446285.5_1_2:10584666-10585103:-|nuORF	ENST00000446285.5_1_2:10584666-10585103:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3162231445312	2	555.318054	1108.62156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.74	1	116.72	116.22	117.22	-0.022781								0	0	0	0.38004	1	30234	30234		0.69038	0	1				57565	10217	32962	32963	70547	70547					0.07158976458731559
WTRKLMKF	8	Unmodified	_WTRKLMKF_					0	0	0		ENST00000446285.5_1_2:10584666-10585103:-|nuORF;ENST00000405333.5_1_2:10584727-10585148:-|nuORF	ENST00000446285.5_1_2:10584666-10585103:-|nuORF	ENST00000446285.5_1_2:10584666-10585103:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.316162109375	2	555.318054	1108.62156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.51	1	118.49	117.99	118.99	-0.024147								0	0	0	0.38004	1	30630	30630		0.69038	0	1				57566	10217	32962	32963	70548	70548					0.07158976458731559
WTRKLMKF	8	Unmodified	_WTRKLMKF_					0	0	0		ENST00000446285.5_1_2:10584666-10585103:-|nuORF;ENST00000405333.5_1_2:10584727-10585148:-|nuORF	ENST00000446285.5_1_2:10584666-10585103:-|nuORF	ENST00000446285.5_1_2:10584666-10585103:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3164672851562	2	555.318054	1108.62156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.64	1	113.65	113.15	114.15	0.014824								0	0	0	0.37724	1	29564	29564		2.3027	1.6124	1				57567	10217	32962	32963	70549	70549					0.07158976458731559
WTRKLMKF	8	Unmodified	_WTRKLMKF_					0	0	0		ENST00000446285.5_1_2:10584666-10585103:-|nuORF;ENST00000405333.5_1_2:10584727-10585148:-|nuORF	ENST00000446285.5_1_2:10584666-10585103:-|nuORF	ENST00000446285.5_1_2:10584666-10585103:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.7960815429688	2	555.318054	1108.62156	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.78	1	116.8	116.3	117.3	0.020988								0	0	0	0.37664	1	30292	30292		2.5775	0.27475	1				57568	10217	32962	32963	70550	70550					0.07158976458731559
WTSKCIAIE	9	Unmodified	_WTSKCIAIE_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.7846069335938	2	525.76806	1049.52157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.866	1	61.857	61.357	62.357	-0.0085526								0	0	0	0.21353	1	15218	15218		18.146	2.2992	1				57569	3803	32963	32964	70551	70551					-0.001213056657661582
WTVRPLSTPCL	11	Unmodified	_WTVRPLSTPCL_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.2443542480469	3	424.897152	1271.66963	-0.17713	-7.5263E-05	-1.4069	-0.00059781	-1.5841	-0.00067307	424.8965472293917	41.191	0.32229	41.281	41.106	41.429	0.090248					20	11	2	0	0	0	0.33169	1	8884	8884		6.2344	1.5184	1	199160			57570	12750	32964	32965	70552	70552					0.04466005588119515
WTVRPLSTPCL	11	Unmodified	_WTVRPLSTPCL_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.2444152832031	3	424.897152	1271.66963	-0.18466	-7.846E-05	-1.2704	-0.00053979	-1.455	-0.00061825	424.89645536697276	41.051	0.41008	41.147	40.987	41.397	0.096626					23	14	2	0	0	0	0.32951	1	8853	8853		10.315	3.2135	1	257590			57571	12750	32964	32965	70553	70553					0.04466005588119515
WTWAAPLSL	9	Unmodified	_WTWAAPLSL_					0	0	0			REV__ENST00000493242.1_1_19:54784347-54784886:-|nuORF	REV__ENST00000493242.1_1_19:54784347-54784886:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7789306640625	2	522.779285	1043.54402	0.44922	0.00023485	-0.91725	-0.00047952	-0.46802	-0.00024467	522.778754909497	19.78	0.74871	19.664	19.405	20.154	-0.11592					54	25	3	0	0	0	0.18803	1	2359	2359		25.399	3.8623	1	187540	+		57572	20653	32965	32966	70554	70554					0.023986617941773147
WTWAAPLSL	9	Unmodified	_WTWAAPLSL_					0	0	0			REV__ENST00000493242.1_1_19:54784347-54784886:-|nuORF	REV__ENST00000493242.1_1_19:54784347-54784886:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	522.779285	1043.54402	0.44922	0.00023485	-0.91725	-0.00047952	-0.46802	-0.00024467	522.778754909497	19.78	0.74871	19.664	19.405	20.154	-0.11592	-0.014648	0.00011517	NaN	25.399	54	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187540	+		57573	20653	32965	32966							0.023986617941773147
WTWAAPLSL	9	Unmodified	_WTWAAPLSL_					0	0	0			REV__ENST00000493242.1_1_19:54784347-54784886:-|nuORF	REV__ENST00000493242.1_1_19:54784347-54784886:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	522.779285	1043.54402	0.53655	0.0002805	-1.1459	-0.00059906	-0.60937	-0.00031857	522.7786333776156	19.746	0.66636	19.691	19.423	20.09	-0.055693	0.012294	-0.00012392	NaN	25.399	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210100	+		57574	20653	32965	32966							0.023986617941773147
WTWPMRWTM	9	Unmodified	_WTWPMRWTM_					0	0	0		ENST00000566621.5_2_15:36946321-36950052:+|nuORF	ENST00000566621.5_2_15:36946321-36950052:+|nuORF	ENST00000566621.5_2_15:36946321-36950052:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.88543701171875	3	432.200178	1293.5787	0.23361	0.00010097	1.4737	0.00063692	1.7073	0.00073789	432.1999648574213	20.521	0.080397	20.468	20.418	20.499	-0.052912					4	2	2	0	0	0	0.2615	1	2563	2563		2.4985	0	1	19673			57575	11983	32966	32967	70555	70555					-0.05634161661032522
WTWQFTVK	8	Unmodified	_WTWQFTVK_					0	0	0		ENST00000600513.1_19:20509723-20509759:-|nuORF	ENST00000600513.1_19:20509723-20509759:-|nuORF	ENST00000600513.1_19:20509723-20509759:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.2843017578125	2	548.284734	1094.55492	0.37388	0.000205	-0.17694	-9.7013E-05	0.19695	0.00010798	548.284517966703	25.936	0.55001	25.914	25.608	26.158	-0.022238					32	19	3	0	0	0	0.45307	1	4249	4249		4.756	0	1	248770			57576	12248	32967	32968	70556	70556					0.011420641684708244
WTWSAVRG	8	Unmodified	_WTWSAVRG_					0	0	0		nc|ENSG00000147526|O75410-10|TACC1;nc|ENSG00000147526|O75410-6|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1	nc|ENSG00000147526|O75410-10|TACC1	nc|ENSG00000147526|O75410-10|TACC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.7478942871094	2	481.745776	961.477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.99	1	103.99	103.49	104.49	0								0	0	0	0.36623	1	27615	27615		7.2892	1.5288	1				57577	4770	32968	32969	70557	70557					-0.005279486969016034
WVDPVIVGL	9	Unmodified	_WVDPVIVGL_					0	0	0			REV__ENST00000373253.7_1_1:36031497-36031602:+|nuORF	REV__ENST00000373253.7_1_1:36031497-36031602:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.2893371582031	2	499.289485	996.564418	0.29309	0.00014634	0.13144	6.5625E-05	0.42452	0.00021196	499.289670762263	105.04	1.0603	105.04	104.33	105.39	0.0011444					200	155	2	0	0	0	0.30166	1	27851	27851		8.5933	3.8373	1	241070	+		57578	20432	32969	32970	70558	70558					0.06599832453991894
WVDYLPSAL	9	Unmodified	_WVDYLPSAL_					0	0	0		ENST00000585065.1_1_17:56071321-56071417:-|nuORF	ENST00000585065.1_1_17:56071321-56071417:-|nuORF	ENST00000585065.1_1_17:56071321-56071417:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.7749633789062	2	532.276575	1062.5386	0.19197	0.00010218	-0.10853	-5.7767E-05	0.083444	4.4415E-05	532.7778259921092	14.668	0.31365	14.668	14.531	14.845	0					20	10	3	0	0	0	0.26145	1	816	816		2.0598	0	1	47706			57579	12098	32970	32971	70559	70559					0.00982938211700457
WVEALSTRR	9	Unmodified	_WVEALSTRR_					0	0	0			REV__ENST00000470487.5_1_3:167813142-167813508:-|nuORF	REV__ENST00000470487.5_1_3:167813142-167813508:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.824951171875	2	559.309272	1116.60399	0.15148	8.4727E-05	3.026	0.0016925	3.1775	0.0017772	559.3110827241732	18.426	0.65954	18.308	17.896	18.556	-0.11739					31	22	2	0	0	0	0.33018	1	1917	1917		4.3292	0.38484	1	46250	+		57580	21351	32971	32972	70560	70560					0.050353524574120456
WVEALSTRR	9	Unmodified	_WVEALSTRR_					0	0	0			REV__ENST00000470487.5_1_3:167813142-167813508:-|nuORF	REV__ENST00000470487.5_1_3:167813142-167813508:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	559.309272	1116.60399	-0.021453	-1.1999E-05	2.7418	0.0015335	2.7203	0.0015215	559.3105974174935	18.381	0.45192	18.323	17.98	18.432	-0.058174	-0.0030951	-0.00050505	NaN	4.3292	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47704	+		57581	21351	32971	32972							0.050353524574120456
WVFFHWTKKGL	11	Unmodified	_WVFFHWTKKGL_					0	0	0			REV__ENST00000245414.8_1_5:131819023-131819143:-|nuORF	REV__ENST00000245414.8_1_5:131819023-131819143:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7593994140625	3	483.599435	1447.77648	-0.10439	-5.0483E-05	-0.3053	-0.00014764	-0.40969	-0.00019813	483.59936517427326	13.254	0.37819	13.155	13.011	13.389	-0.099291					25	12	3	0	0	0	0.33346	1	429	429		0.50596	0.36606	1	96318	+		57582	19501	32972	32973	70561	70561					0.0704992386476988
WVFFHWTKKGL	11	Unmodified	_WVFFHWTKKGL_					0	0	0			REV__ENST00000245414.8_1_5:131819023-131819143:-|nuORF	REV__ENST00000245414.8_1_5:131819023-131819143:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	483.599435	1447.77648	-0.12304	-5.9502E-05	-0.33235	-0.00016072	-0.45539	-0.00022022	483.5992118239968	13.132	0.33334	13.132	13.003	13.336	0	-0.025274	6.5448E-05	NaN	0.50596	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107790	+		57583	19501	32972	32973							0.0704992386476988
WVFLVAHSL	9	Unmodified	_WVFLVAHSL_					0	0	0		ENST00000412676.5_1_12:108686098-108686329:-|nuORF	ENST00000412676.5_1_12:108686098-108686329:-|nuORF	ENST00000412676.5_1_12:108686098-108686329:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.81396484375	2	536.302927	1070.5913	0.4185	0.00022444	-3.0522	-0.0016369	-2.6337	-0.0014125	536.3009918684755	52.755	0.38069	52.754	52.548	52.929	-0.00080872					19	13	2	0	0	0	0.24311	1	12382	12382		16.942	3.8998	1	200630			57584	10279	32973	32974	70562	70562					0.05882941065169689
WVFMFVCVL	9	Unmodified	_WVFMFVCVL_					0	0	0		ENSG00000117971|ENST00000261751|CHRNB4	ENSG00000117971|ENST00000261751|CHRNB4	ENSG00000117971|ENST00000261751|CHRNB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.79248046875	2	572.290117	1142.56568	0.41473	0.00023735	-0.29286	-0.0001676	0.12187	6.9747E-05	572.2899347040328	86.394	0.59158	86.385	85.962	86.554	-0.0090103					34	22	2	0	0	0	0.21902	1	22735	22735		20.871	6.2895	1	73091			57585	2810	32974	32975	70563	70563					0.00010007226910602185
WVFMFVCVL	9	Unmodified	_WVFMFVCVL_					0	0	0		ENSG00000117971|ENST00000261751|CHRNB4	ENSG00000117971|ENST00000261751|CHRNB4	ENSG00000117971|ENST00000261751|CHRNB4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	572.290117	1142.56568	0.42109	0.00024099	-1.1579	-0.00066266	-0.73682	-0.00042167	572.2898360570208	86.322	0.33076	86.322	86.175	86.506	0	-0.010838	-0.00083952	NaN	20.871	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99721			57586	2810	32974	32975							0.00010007226910602185
WVFMFVCVL	9	Unmodified	_WVFMFVCVL_					0	0	0		ENSG00000117971|ENST00000261751|CHRNB4	ENSG00000117971|ENST00000261751|CHRNB4	ENSG00000117971|ENST00000261751|CHRNB4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	572.290117	1142.56568	0.4561	0.00026102	-0.10657	-6.0991E-05	0.34953	0.00020003	572.2900881171006	86.208	0.73995	86.292	85.782	86.522	0.084251	-0.041237	0.00036382	NaN	20.871	37	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113640			57587	2810	32974	32975							0.00010007226910602185
WVGDVVRV	8	Unmodified	_WVGDVVRV_					0	0	0		nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;ENST00000479659.5_1_1:1561777-1565907:+|nuORF;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;nc|ENSG00000197530|Q96AX9-4|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2	nc|ENSG00000197530|Q96AX9-9|MIB2	nc|ENSG00000197530|Q96AX9-9|MIB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.26531982421875	2	465.263802	928.513051	-0.30015	-0.00013965	1.708	0.00079465	1.4078	0.000655	465.2654307820352	12.832	0.37527	12.733	12.578	12.953	-0.099291					28	12	4	0	0	0	0.46491	1	255	255		0.69038	0	1	65804			57588	7971	32975	32976	70564	70564					0.04593508479956654
WVGDVVRV	8	Unmodified	_WVGDVVRV_					0	0	0		nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;ENST00000479659.5_1_1:1561777-1565907:+|nuORF;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;nc|ENSG00000197530|Q96AX9-4|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2	nc|ENSG00000197530|Q96AX9-9|MIB2	nc|ENSG00000197530|Q96AX9-9|MIB2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	465.263802	928.513051	-0.35626	-0.00016576	1.3492	0.00062773	0.99294	0.00046198	465.265150594491	12.797	0.30844	12.797	12.669	12.977	0	0.033676	-0.00024058	NaN	0.69038	25	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50737			57589	7971	32975	32976							0.04593508479956654
WVGPLYLTKQ	10	Unmodified	_WVGPLYLTKQ_					0	0	0			REV__nc|ENSG00000166105|Q8NCI6-2|GLB1L3	REV__nc|ENSG00000166105|Q8NCI6-2|GLB1L3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.8397216796875	2	602.839874	1203.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.103	1	19.987	19.487	20.487	-0.11592								0	0	0	0.38201	1	2437	2437		0.45834	0	1		+		57590	17291	32976	32977	70565	70565					0.07150864436812299
WVGPPKQR	8	Unmodified	_WVGPPKQR_					0	0	0			REV__ENSG00000168961|ENST00000395473|LGALS9	REV__ENSG00000168961|ENST00000395473|LGALS9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.6470642089844	2	484.277244	966.539935	0.10906	5.2817E-05	-2.0614	-0.00099831	-1.9524	-0.0009455	484.2761737867487	43.005	0.19171	43.096	42.956	43.147	0.091358					11	6	2	0	0	0	0.34337	1	9394	9394		5.2307	0	1	96097	+		57591	17492	32977	32978	70566	70566					0.05532617091125758
WVHEKAKY	8	Unmodified	_WVHEKAKY_					0	0	0		DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant;ENSG00000178105|ENST00000322536|DDX10	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3170166015625	2	530.782359	1059.55016	0.13045	6.9243E-05	-0.19527	-0.00010365	-0.06482	-3.4405E-05	530.7821293989363	14.085	0.40805	14.019	13.716	14.124	-0.066067					22	13	2	0	0	0	0.34437	1	580	580		0.69038	0	1	59222			57592	260	32978	32979	70567	70567					0.022771800257032737
WVHEKAKY	8	Unmodified	_WVHEKAKY_					0	0	0		DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant;ENSG00000178105|ENST00000322536|DDX10	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	530.782359	1059.55016	0.030659	1.6274E-05	0.69513	0.00036896	0.72579	0.00038524	530.7822287641919	14.053	0.36944	13.948	13.79	14.159	-0.10466	-0.035423	0.00053351	NaN	0.69038	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65773			57593	260	32978	32979							0.022771800257032737
WVITNCVSTM	10	Unmodified	_WVITNCVSTM_					0	0	0		nc|ENSG00000130055|Q9HCC8-3|GDPD2;nc|ENSG00000130055|Q9HCC8-2|GDPD2;ENSG00000130055|ENST00000374382|GDPD2	nc|ENSG00000130055|Q9HCC8-3|GDPD2	nc|ENSG00000130055|Q9HCC8-3|GDPD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.2727661132812	2	577.272652	1152.53075	0.22829	0.00013179	-0.098428	-5.682E-05	0.12987	7.4969E-05	577.27274855414	21.614	1.4904	21.564	21.265	22.755	-0.049377					144	52	5	0	0	0	0.40992	1	3040	3040		1.6526	0	1	3067500			57594	12697	32979	32980	70568	70568					-0.03941280371736866
WVLLLRLL	8	Unmodified	_WVLLLRLL_					0	0	0		ENSG00000157150|ENST00000287814|TIMP4	ENSG00000157150|ENST00000287814|TIMP4	ENSG00000157150|ENST00000287814|TIMP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.8365478515625	2	513.347138	1024.67972	-0.035017	-1.7976E-05	-1.6606	-0.00085246	-1.6956	-0.00087043	513.3461493524219	12.183	0.15456	12.183	12.119	12.273	0					13	6	3	0	0	0	0.34445	1	33	33		0	0	1	45664			57595	5284	32980	32981	70569	70569					0.16836981375649884
WVLLLRLL	8	Unmodified	_WVLLLRLL_					0	0	0		ENSG00000157150|ENST00000287814|TIMP4	ENSG00000157150|ENST00000287814|TIMP4	ENSG00000157150|ENST00000287814|TIMP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	513.347138	1024.67972	-0.016444	-8.4417E-06	-2.2312	-0.0011454	-2.2477	-0.0011538	513.3460448628708	12.177	0.20651	12.08	12	12.206	-0.096607	-0.050103	-0.00042409	NaN	0	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41378			57596	5284	32980	32981							0.16836981375649884
WVLLLRLL	8	Unmodified	_WVLLLRLL_					0	0	0		ENSG00000157150|ENST00000287814|TIMP4	ENSG00000157150|ENST00000287814|TIMP4	ENSG00000157150|ENST00000287814|TIMP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	513.347138	1024.67972	-0.2253	-0.00011566	-1.3399	-0.00068784	-1.5652	-0.0008035	513.3461029305661	12.197	0.40266	12.129	11.974	12.377	-0.06806	-0.0019531	0.00049103	NaN	0	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31044			57597	5284	32980	32981							0.16836981375649884
WVLRADASIR	10	Unmodified	_WVLRADASIR_					0	0	0		ENSG00000056736|ENST00000288167|IL17RB;nc|ENSG00000056736|Q9NRM6-2|IL17RB;ENST00000475124.1_1_3:53880615-53891834:+|nuORF	ENSG00000056736|ENST00000288167|IL17RB	ENSG00000056736|ENST00000288167|IL17RB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8206176757812	2	593.838197	1185.66184	0.26817	0.00015925	0.1882	0.00011176	0.45637	0.00027101	593.8384378356673	31.292	0.66407	31.292	30.862	31.526	0					56	23	3	0	0	0	0.33104	1	5828	5828		16.149	3.9084	1	488460			57598	714	32981	32982	70570	70570					0.07643614382823216
WVLRADASIR	10	Unmodified	_WVLRADASIR_					0	0	0		ENSG00000056736|ENST00000288167|IL17RB;nc|ENSG00000056736|Q9NRM6-2|IL17RB;ENST00000475124.1_1_3:53880615-53891834:+|nuORF	ENSG00000056736|ENST00000288167|IL17RB	ENSG00000056736|ENST00000288167|IL17RB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.820556640625	2	593.838197	1185.66184	0.19532	0.00011599	0.2724	0.00016176	0.46772	0.00027775	593.8383669362778	31.261	0.74993	31.303	30.793	31.543	0.042366					64	26	3	0	0	0	0.34053	1	5826	5826		14.405	2.1647	1	531030			57599	714	32981	32982	70571	70571					0.07643614382823216
WVLVSSTL	8	Unmodified	_WVLVSSTL_					0	0	0		ENSG00000134873|ENST00000299339|CLDN10	ENSG00000134873|ENST00000299339|CLDN10	ENSG00000134873|ENST00000299339|CLDN10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7528381347656	2	452.760561	903.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.678	1	66.665	66.165	67.165	-0.013588								0	0	0	0.35251	1	16690	16690		13.508	0	1				57600	3821	32982	32983	70572	70572					0.0509557052856735
WVLYILML	8	Unmodified	_WVLYILML_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENSG00000177054|ENST00000446113|ZDHHC13;ENST00000525490.5_1_11:19191881-19197504:+|nuORF	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.2913208007812	2	525.806457	1049.59836	0.19401	0.00010201	-1.5922	-0.00083717	-1.3982	-0.00073516	525.8055137254873	12.215	0.45498	12.118	11.954	12.409	-0.096607					22	17	2	0	0	0	0.34434	1	135	135		0.79363	0	1	53692			57601	6958	32983	32984	70573	70573					0.07554537621376767
WVLYRIVA	8	Unmodified	_WVLYRIVA_					0	0	0			REV__ENSG00000122121|ENST00000371106|XPNPEP2	REV__ENSG00000122121|ENST00000371106|XPNPEP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.3055725097656	2	510.30547	1018.59639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.67	1	117.67	117.17	118.17	0								0	0	0	0.37992	1	30420	30420		0.79363	0	1		+		57602	15148	32984	32985	70574	70574					0.08783244927803935
WVMIIVTI	8	Unmodified	_WVMIIVTI_					0	0	0		ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7997741699219	2	487.790807	973.56706	0.45642	0.00022264	0.13243	6.4598E-05	0.58885	0.00028724	487.79056759443574	86.773	1.5085	86.773	86.1	87.609	0					80	62	2	0	0	0	0.42758	1	23079	23079		13.508	0	1	690380			57603	1767	32985	32986	70575	70575					0.07921964587308139
WVMIIVTI	8	Unmodified	_WVMIIVTI_					0	0	0		ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.8001403808594	2	487.790807	973.56706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.828	1	87.918	87.418	88.418	0.089195								0	0	0	0.36336	1	23168	23168		8.5933	0	1				57604	1767	32985	32986	70576	70576					0.07921964587308139
WVMIIVTI	8	Unmodified	_WVMIIVTI_					0	0	0		ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.79974365234375	2	487.790807	973.56706	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.843	1	89.934	89.434	90.434	0.090569								0	0	0	0.36336	1	23784	23784		8.5933	0	1				57605	1767	32985	32986	70577	70577					0.07921964587308139
WVMIIVTI	8	Unmodified	_WVMIIVTI_					0	0	0		ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.24969482421875	2	487.790807	973.56706	0.34405	0.00016783	0.22096	0.00010778	0.56502	0.00027561	487.790622477175	86.644	1.4996	86.73	86.371	87.871	0.086075					98	68	3	0	0	0	0.34337	1	23074	23074		5.2307	0	1	628230			57606	1767	32985	32986	70578	70578					0.07921964587308139
WVPIRVGIR	9	Unmodified	_WVPIRVGIR_					0	0	0			REV__ENST00000512692.6_1_4:141290499-141294498:-|nuORF	REV__ENST00000512692.6_1_4:141290499-141294498:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8419189453125	2	548.342918	1094.67128	0.052333	2.8697E-05	-0.19161	-0.00010507	-0.13928	-7.6371E-05	548.3432785489898	12.21	0.12779	12.142	12.068	12.196	-0.06806					6	5	2	0	0	0	0.26251	1	65	65		0.6015	0	1	4136.7	+		57607	21817	32986	32987	70579	70579					0.12773427459023878
WVRERSVIDRT	11	Unmodified	_WVRERSVIDRT_					0	0	0			REV__ENSG00000134371|ENST00000367435|CDC73	REV__ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.2718505859375	3	472.928392	1415.76335	0.50475	0.00023871	-1.2053	-0.00057	-0.70051	-0.00033129	472.92775818285423	33.506	0.57949	33.572	33.266	33.845	0.06636					41	20	3	0	0	0	0.43513	1	6539	6539		6.6235	1.5759	1	310180	+		57608	15671	32987	32988	70580	70580					0.07209441014742879
WVRRPQWH	8	Unmodified	_WVRRPQWH_					0	0	0			REV__ENST00000397554.5_1_20:33934502-33934547:-|nuORF	REV__ENST00000397554.5_1_20:33934502-33934547:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.8132934570312	2	582.812316	1163.61008	0.25336	0.00014766	0.59301	0.00034561	0.84636	0.00049327	582.8127427316526	19.387	0.8554	19.332	19.048	19.904	-0.055693					45	29	3	0	0	0	0.45942	1	2207	2207		2.5775	0.51773	1	83819	+		57609	20674	32988	32989	70581	70581					0.03481915479596864
WVRTCQRT	8	Unmodified	_WVRTCQRT_					0	0	0		nc|ENSG00000173662|Q7RTX1-4|TAS1R1	nc|ENSG00000173662|Q7RTX1-4|TAS1R1	nc|ENSG00000173662|Q7RTX1-4|TAS1R1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2691650390625	2	525.269093	1048.52363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.46	1	112.46	111.96	112.96	0								0	0	0	0.37724	1	29232	29232		2.3027	0	1				57610	12842	32989	32990	70582	70582					0.0013116786271893943
WVSYRHKPR	9	Unmodified	_WVSYRHKPR_					0	0	0			REV__ENST00000423783.1_1_17:17146010-17146160:+|nuORF	REV__ENST00000423783.1_1_17:17146010-17146160:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.8841247558594	3	410.228113	1227.66251	-0.11952	-4.903E-05	0.32526	0.00013343	0.20574	8.4402E-05	410.2282987394817	15.813	0.75744	15.749	15.158	15.915	-0.064413					35	25	2	0	0	0	0.26169	1	1078	1078		2.2828	0.82766	1	35705	+		57611	20886	32990	32991	70583	70583					0.05778453822540541
WVVHWRTLP	9	Unmodified	_WVVHWRTLP_					0	0	0			REV__ENST00000538886.5_1_17:73233291-73233537:-|nuORF	REV__ENST00000538886.5_1_17:73233291-73233537:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.7672119140625	2	597.33255	1192.65055	0.17758	0.00010607	-0.83788	-0.00050049	-0.6603	-0.00039442	597.3320334851595	52.044	0.31715	52.044	51.876	52.194	-0.00080872					17	11	2	0	0	0	0.25526	1	12153	12153		7.9102	1.7044	1	163180	+		57612	22104	32991	32992	70584	70584					0.0619283707935665
WWARRIKTN	9	Unmodified	_WWARRIKTN_					0	0	0			REV__AluSq2_dup18061|chr5:139546037-139546340:-|2.2684182816549257|0.1342600248197837|4.08|522.0|3|1|sense	REV__AluSq2_dup18061|chr5:139546037-139546340:-|2.2684182816549257|0.1342600248197837|4.08|522.0|3|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2208251953125	3	410.899996	1229.67816	0.20193	8.2973E-05	1.4366	0.00059029	1.6385	0.00067326	410.90035961865175	39.985	0.25333	40.084	39.977	40.23	0.099407					12	8	2	0	0	0	0.26186	1	8510	8510		2.086	0	1	92498	+		57613	13101	32992	32993	70585	70585					0.07250740339623007
WWARRIKTN	9	Unmodified	_WWARRIKTN_					0	0	0			REV__AluSq2_dup18061|chr5:139546037-139546340:-|2.2684182816549257|0.1342600248197837|4.08|522.0|3|1|sense	REV__AluSq2_dup18061|chr5:139546037-139546340:-|2.2684182816549257|0.1342600248197837|4.08|522.0|3|1|sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	410.899996	1229.67816	-0.16433	-6.7523E-05	0.89025	0.00036581	0.72593	0.00029828	410.90024976672316	39.973	0.27536	39.973	39.886	40.161	0	-0.055789	-0.00018843	NaN	2.086	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78923	+		57614	13101	32992	32993							0.07250740339623007
WWEGRSMN	8	Unmodified	_WWEGRSMN_					0	0	0			REV__ENST00000396987.7_1_8:41479186-41479252:+|nuORF	REV__ENST00000396987.7_1_8:41479186-41479252:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.23291015625	2	533.232176	1064.4498	0.44996	0.00023993	0.76994	0.00041056	1.2199	0.00065049	533.2324588467542	21.868	0.81593	21.868	21.487	22.303	0					54	29	2	0	0	0	0.46092	1	3003	3003		2.0598	0	1	106680	+		57615	20663	32993	32994	70586	70586					-0.07984800299595918
WWITADEKE	9	Unmodified	_WWITADEKE_					0	0	0			REV__PADI6|p.I599Pfs*3|1|0.14|ENSG00000276747|chr1:17398789-17398790|AC/-|frameshift_variant	REV__PADI6|p.I599Pfs*3|1|0.14|ENSG00000276747|chr1:17398789-17398790|AC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.3003540039062	2	589.279846	1176.54514	0.48842	0.00028782	-0.0095495	-5.6273E-06	0.47887	0.00028219	589.2798080679032	48.991	1.3892	48.991	48.749	50.138	0					127	50	4	0	0	0	0.23775	1	11356	11356		18.135	18.135	1	4770800	+		57616	19340	32994	32995	70587	70587					-0.03607168627604551
WWITADEKE	9	Unmodified	_WWITADEKE_					0	0	0			REV__PADI6|p.I599Pfs*3|1|0.14|ENSG00000276747|chr1:17398789-17398790|AC/-|frameshift_variant	REV__PADI6|p.I599Pfs*3|1|0.14|ENSG00000276747|chr1:17398789-17398790|AC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.30029296875	2	589.279846	1176.54514	0.33732	0.00019878	0.30845	0.00018176	0.64577	0.00038054	589.2798866317268	49.071	0.99946	49.116	48.851	49.85	0.044891					122	36	6	0	0	0	0.27532	1	11368	11368		12.532	12.532	1	4798000	+		57617	19340	32994	32995	70588	70588					-0.03607168627604551
WWLERPLVL	9	Unmodified	_WWLERPLVL_					0	0	0		ENST00000402618.6_1_20:18269192-18290832:+|nuORF	ENST00000402618.6_1_20:18269192-18290832:+|nuORF	ENST00000402618.6_1_20:18269192-18290832:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3709716796875	2	606.350409	1210.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.77	1	118.74	118.24	119.24	-0.024147								0	0	0	0.2672	1	30686	30686		0.52476	0	1				57618	10199	32995	32996	70589	70589					0.08934874536362258
WWLERPLVL	9	Unmodified	_WWLERPLVL_					0	0	0		ENST00000402618.6_1_20:18269192-18290832:+|nuORF	ENST00000402618.6_1_20:18269192-18290832:+|nuORF	ENST00000402618.6_1_20:18269192-18290832:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3699951171875	2	606.350409	1210.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.74	1	119.72	119.22	120.22	-0.024361								0	0	0	0.26704	1	30903	30903		0.6015	0.076735	1				57619	10199	32995	32996	70590	70590					0.08934874536362258
WWMAGVEL	8	Unmodified	_WWMAGVEL_					0	0	0			REV__ENST00000486064.5_1_1:44460678-44461829:+|nuORF	REV__ENST00000486064.5_1_1:44460678-44461829:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.7239685058594	2	496.238938	990.463324	0.82038	0.0004071	1.3219	0.00065598	2.1423	0.0010631	496.2394761272199	77.859	0.50699	77.859	77.555	78.062	0					31	18	2	0	0	0	0.33245	1	20157	20157		19.439	0	1	202110	+		57620	21548	32996	32997	70591	70591					-0.03228942520354394
WWMAGVEL	8	Unmodified	_WWMAGVEL_					0	0	0			REV__ENST00000486064.5_1_1:44460678-44461829:+|nuORF	REV__ENST00000486064.5_1_1:44460678-44461829:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7237243652344	2	496.238938	990.463324	0.77206	0.00038313	1.5719	0.00078006	2.344	0.0011632	496.23949679345543	77.746	0.62083	77.801	77.571	78.191	0.055412					36	22	2	0	0	0	0.33245	1	20079	20079		19.439	19.439	1	166970	+		57621	21548	32996	32997	70592	70592					-0.03228942520354394
WWMAGVEL	8	Unmodified	_WWMAGVEL_					0	0	0			REV__ENST00000486064.5_1_1:44460678-44461829:+|nuORF	REV__ENST00000486064.5_1_1:44460678-44461829:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.72381591796875	2	496.238938	990.463324	0.87102	0.00043223	1.1767	0.00058394	2.0477	0.0010162	496.23951424524375	77.839	0.57922	77.807	77.542	78.121	-0.031334					33	20	2	0	0	0	0.33245	1	20100	20100		19.439	3.5918	1	235890	+		57622	21548	32996	32997	70593	70593					-0.03228942520354394
WWPLVEILR	9	Unmodified	_WWPLVEILR_					0	0	0			REV__chrX:70610543-70613253|397|28.71|0.16|7.46|-|1|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|38	REV__chrX:70610543-70613253|397|28.71|0.16|7.46|-|1|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|38	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.3696899414062	2	606.350409	1210.68626	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.76	1	113.76	113.26	114.26	0								0	0	0	0.26704	1	29540	29540		0.6015	0.076735	1		+		57623	13225	32997	32998	70594	70594					0.08934874536362258
WWRRQWVEEFF	11	Unmodified	_WWRRQWVEEFF_					0	0	0		nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF	nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-3|LMF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7852172851562	3	556.94052	1667.79973	0.017417	9.7E-06	-2.7453	-0.001529	-2.7279	-0.0015193	556.9385781108442	42.858	0.24218	42.949	42.827	43.069	0.091362					13	8	2	0	0	0	0.33351	1	9326	9326		0.094841	0.094841	1	180660			57624	1554	32998	32999	70595	70595					-0.007456820885408888
WWRRQWVEEFF	11	Unmodified	_WWRRQWVEEFF_					0	0	0		nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF	nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-3|LMF2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	556.94052	1667.79973	0.32937	0.00018344	-4.1135	-0.002291	-3.7841	-0.0021075	556.9379751194543	42.898	0.27351	42.983	42.861	43.135	0.085197	0.017133	-0.0012429	NaN	0.094841	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181950			57625	1554	32998	32999							-0.007456820885408888
WWSYANKLVD	10	Unmodified	_WWSYANKLVD_					0	0	0			REV__ENST00000415149.6_1_3:107526041-107526149:+|nuORF	REV__ENST00000415149.6_1_3:107526041-107526149:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.8572998046875	2	641.316763	1280.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.64	1	102.64	102.14	103.14	0								0	0	0	0.38126	1	27297	27297		1.6526	0.17072	1		+		57626	20805	32999	33000	70596	70596					-0.010112004652683027
WWVWRSRRRRA	11	Unmodified	_WWVWRSRRRRA_					0	0	0		ENST00000262160.10_3_18:45423005-45423077:-|nuORF	ENST00000262160.10_3_18:45423005-45423077:-|nuORF	ENST00000262160.10_3_18:45423005-45423077:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.49700927734375	4	404.48018	1613.89161	-0.014311	-5.7886E-06	-1.2577	-0.00050873	-1.2721	-0.00051452	404.4796731093168	36.013	0.22211	36.095	35.98	36.202	0.082359					11	7	2	0	0	0	0.33334	1	7289	7289		1.2148	1.1315	1	81509			57627	8982	33000	33001	70597	70597					0.10922465839144024
WWVWRSRRRRA	11	Unmodified	_WWVWRSRRRRA_					0	0	0		ENST00000262160.10_3_18:45423005-45423077:-|nuORF	ENST00000262160.10_3_18:45423005-45423077:-|nuORF	ENST00000262160.10_3_18:45423005-45423077:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.49700927734375	4	404.48018	1613.89161	0.092752	3.7516E-05	-1.1434	-0.00046247	-1.0506	-0.00042495	404.4798812590411	36.016	0.26488	36.102	35.931	36.196	0.086246					13	9	2	0	0	0	0.33334	1	7269	7269		1.2148	1.1315	1	83340			57628	8982	33000	33001	70598	70598					0.10922465839144024
WWVWRSRRRRA	11	Unmodified	_WWVWRSRRRRA_					0	0	0		ENST00000262160.10_3_18:45423005-45423077:-|nuORF	ENST00000262160.10_3_18:45423005-45423077:-|nuORF	ENST00000262160.10_3_18:45423005-45423077:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		4	404.48018	1613.89161	0.015923	6.4407E-06	-1.3386	-0.00054145	-1.3227	-0.00053501	404.4798154044659	36.141	0.21669	36.141	36.012	36.229	0	0.02846	-0.00014462	NaN	1.2148	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130570			57629	8982	33000	33001							0.10922465839144024
WWYRPFQYFEK	11	Unmodified	_WWYRPFQYFEK_					0	0	0		nc|ENSG00000198964|Q86VZ5-2|SGMS1;ENSG00000198964|ENST00000361781|SGMS1	nc|ENSG00000198964|Q86VZ5-2|SGMS1	nc|ENSG00000198964|Q86VZ5-2|SGMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.60107421875	3	550.601504	1648.78268	0.063383	3.4899E-05	-0.98111	-0.0005402	-0.91773	-0.0005053	550.6010399780163	13.857	0.65369	13.857	13.567	14.221	0					47	22	3	0	0	0	0.48558	1	571	571		0	0	1	194930			57630	8177	33001	33002	70599	70599					-0.015756026943790857
WWYRPFQYFEK	11	Unmodified	_WWYRPFQYFEK_					0	0	0		nc|ENSG00000198964|Q86VZ5-2|SGMS1;ENSG00000198964|ENST00000361781|SGMS1	nc|ENSG00000198964|Q86VZ5-2|SGMS1	nc|ENSG00000198964|Q86VZ5-2|SGMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.60107421875	3	550.601504	1648.78268	0.079347	4.3689E-05	-0.99433	-0.00054748	-0.91499	-0.00050379	550.6008674767303	14	0.55368	13.895	13.685	14.238	-0.10466					45	19	4	0	0	0	0.48558	1	609	609		0	0	1	156700			57631	8177	33001	33002	70600	70600					-0.015756026943790857
WWYRPFQYFEK	11	Unmodified	_WWYRPFQYFEK_					0	0	0		nc|ENSG00000198964|Q86VZ5-2|SGMS1;ENSG00000198964|ENST00000361781|SGMS1	nc|ENSG00000198964|Q86VZ5-2|SGMS1	nc|ENSG00000198964|Q86VZ5-2|SGMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.6012573242188	3	550.601504	1648.78268	0.052793	2.9068E-05	-0.36514	-0.00020105	-0.31235	-0.00017198	550.601031496889	13.962	0.43487	13.896	13.602	14.037	-0.066068					43	14	5	0	0	0	0.48558	1	596	596		0	0	1	234520			57632	8177	33001	33002	70601	70601					-0.015756026943790857
WYEQGPKREV	10	Unmodified	_WYEQGPKREV_					0	0	0		nc|ENSG00000167815|P32119-2|PRDX2;ENST00000466174.5_1_19:12911560-12912565:-|nuORF	nc|ENSG00000167815|P32119-2|PRDX2	nc|ENSG00000167815|P32119-2|PRDX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	646.3250732421875	2	646.325119	1290.63569	0.63014	0.00040728	-0.62091	-0.00040131	0.0092296	5.9653E-06	646.3245746941903	85.874	1.2646	85.874	85.282	86.546	0					69	49	2	0	0	0	0.41085	1	22536	22536		1.4819	0	1	192960			57633	10808	33002	33003	70602	70602					0.001993004207179183
WYEQGPKREV	10	Unmodified	_WYEQGPKREV_					0	0	0		nc|ENSG00000167815|P32119-2|PRDX2;ENST00000466174.5_1_19:12911560-12912565:-|nuORF	nc|ENSG00000167815|P32119-2|PRDX2	nc|ENSG00000167815|P32119-2|PRDX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	646.8262329101562	2	646.325119	1290.63569	0.54708	0.00035359	-0.66329	-0.0004287	-0.11621	-7.5111E-05	646.3246521979228	85.819	0.97642	85.903	85.159	86.135	0.084251					54	36	2	0	0	0	0.41085	1	22591	22591		1.4819	0.15237	1	198030			57634	10808	33002	33003	70603	70603					0.001993004207179183
WYFRLQSEWDF	11	Unmodified	_WYFRLQSEWDF_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3458251953125	3	526.245498	1575.71466	0.27934	0.000147	1.6206	0.00085285	1.9	0.00099985	526.2467549928718	27.612	0.38295	27.612	27.38	27.763	0					24	12	3	0	0	0	0.33352	1	4733	4733		0	0	1	97808	+		57635	18755	33003	33004	70604	70604					-0.05016472345027978
WYKSKFADL	9	Unmodified	_WYKSKFADL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3030395507812	2	579.303124	1156.5917	0.42278	0.00024492	0.12488	7.2343E-05	0.54766	0.00031726	579.3030638665233	45.006	1.118	45.006	44.383	45.501	0					115	40	4	0	0	0	0.0016724	2	9983	9983;10032		114.19	82.918	1	3326200			57636	537	33004	33005	70605;70606	70605					0.0196631599437751
WYKSKFADL	9	Unmodified	_WYKSKFADL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.3030395507812	2	579.303124	1156.5917	0.47221	0.00027355	0.0066293	3.8404E-06	0.47884	0.00027739	579.3029863869735	44.567	1.4506	44.635	43.753	45.204	0.068569					146	53	5	0	0	0	0.00024732	2	9854	9854;9905		132.38	97.978	1	3438600			57637	537	33004	33005	70607;70608	70607					0.0196631599437751
WYKSKFADL	9	Unmodified	_WYKSKFADL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.3033447265625	2	579.303124	1156.5917	0.40039	0.00023195	0.06557	3.7985E-05	0.46596	0.00026993	579.3030290819912	44.518	1.1939	44.593	44.04	45.234	0.07505					123	43	4	0	0	0	0.0013864	2	9833	9833;9877		117.84	85.052	1	3403800			57638	537	33004	33005	70609;70610	70609					0.0196631599437751
WYLKQLLS	8	Unmodified	_WYLKQLLS_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.E1502Nfs*2|1|0.29|ENSG00000140575|chr15:90492587-90492587|G/-|frameshift_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.778564453125	2	525.80276	1049.59097	0.27837	0.00014637	-1.1471	-0.00060313	-0.86869	-0.00045676	526.3021475392461	29.699	0.12185	29.712	29.623	29.745	0.013475					5	3	2	0	0	0	0.34353	1	5330	5330		4.756	0	1	34759			57639	4321	33005	33006	70611	70611					0.06815521345333764
WYLNKGLW	8	Unmodified	_WYLNKGLW_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2775268554688	2	540.287277	1078.56	NaN	NaN	NaN	NaN	NaN	NaN	NaN	14.466	1	14.361	13.861	14.861	-0.10466								0	0	0	0.37078	1	736	736		5.2307	0	1		+		57640	13717	33006	33007	70612	70612					0.023863680310796553
WYLQDKFF	8	Unmodified	_WYLQDKFF_					0	0	0			REV__nc|ENSG00000198598|Q9ULZ9-2|MMP17	REV__nc|ENSG00000198598|Q9ULZ9-2|MMP17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.8316040039062	2	573.784567	1145.55458	0.40225	0.00023081	0.88524	0.00050794	1.2875	0.00073874	574.2866612168826	86.876	0.42914	86.876	86.809	87.239	0					25	16	2	0	0	0	0.32886	1	22905	22905		21.747	2.4897	1	224160	+		57641	18837	33007	33008	70613	70613					-0.012373555513931933
WYLQDKFF	8	Unmodified	_WYLQDKFF_					0	0	0			REV__nc|ENSG00000198598|Q9ULZ9-2|MMP17	REV__nc|ENSG00000198598|Q9ULZ9-2|MMP17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.2785034179688	2	573.784567	1145.55458	0.40711	0.0002336	-3.6834	-0.0021135	-3.2763	-0.0018799	573.7817858509239	79.455	0.21617	79.426	79.305	79.521	-0.028923					11	8	2	0	0	0	0.34247	1	20613	20613		8.5933	1.304	1	73568	+		57642	18837	33007	33008	70614	70614					-0.012373555513931933
WYLWHQHQFWE	11	Unmodified	_WYLWHQHQFWE_					0	0	0			REV__ENST00000475183.1_1_X:54953428-54957230:+|nuORF	REV__ENST00000475183.1_1_X:54953428-54957230:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8082885742188	3	553.921237	1658.74188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.514	1	12.418	11.918	12.918	-0.096607								0	0	0	0.3823	1	151	151		0	0	1		+		57643	21404	33008	33009	70615	70615					-0.06113944013964101
WYPLVKFKP	9	Unmodified	_WYPLVKFKP_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3439331054688	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.03	1	115.05	114.55	115.55	0.018738								0	0	0	0.26704	1	29899	29899		0.6015	0	1		+		57644	15391	33009	33010	70616	70616					0.08828373650408139
WYRDFMQL	8	Unmodified	_WYRDFMQL_					0	0	0		ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	ENSG00000075213|ENST00000265362|SEMA3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3348999023438	2	579.773677	1157.5328	0.4324	0.00025069	2.949	0.0017098	3.3814	0.0019605	579.7754699622019	59.279	0.34319	59.264	59.113	59.456	-0.014267					18	11	2	0	0	0	0.34092	1	14395	14395		13.508	2.684	1	130880			57645	1039	33010	33011	70617	70617					-0.039664835716166635
WYSLMVRL	8	Unmodified	_WYSLMVRL_					0	0	0			REV__ENST00000582853.5_3_17:27271537-27276872:-|nuORF	REV__ENST00000582853.5_3_17:27271537-27276872:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2900390625	2	534.288963	1066.56337	0.51075	0.00027289	1.5511	0.00082872	2.0618	0.0011016	534.2896637124408	63.177	0.45925	63.177	62.984	63.443	0					34	16	3	0	0	0	0.32038	1	15638	15638		28.487	3.0875	1	426520	+		57646	22495	33011	33012	70618	70618					0.03275294813442997
WYSLMVRL	8	Unmodified	_WYSLMVRL_					0	0	0			REV__ENST00000582853.5_3_17:27271537-27276872:-|nuORF	REV__ENST00000582853.5_3_17:27271537-27276872:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2902221679688	2	534.288963	1066.56337	0.3998	0.00021361	1.1973	0.00063971	1.5971	0.00085333	534.2896097737627	63.107	0.50985	63.202	62.88	63.39	0.095722					29	18	2	0	0	0	0.32038	1	15612	15612		28.487	3.0875	1	398600	+		57647	22495	33011	33012	70619	70619					0.03275294813442997
WYTMLQRN	8	Unmodified	_WYTMLQRN_					0	0	0			REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7446899414062	2	556.271301	1110.52805	0.033538	1.8656E-05	-3.7	-0.0020582	-3.6665	-0.0020396	556.2693650992269	14.566	0.22764	14.461	14.338	14.565	-0.10466					14	7	2	0	0	0	0.34408	1	766	766		2.3027	0.24298	1	31205	+		57648	17371	33012	33013	70620	70620					-0.022793677143681634
WYWRRRPK	8	Unmodified	_WYWRRRPK_					0	0	0		ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.91357421875	3	416.568469	1246.68358	0.092705	3.8618E-05	-0.8504	-0.00035425	-0.7577	-0.00031563	416.9018416467983	20.798	0.14355	20.798	20.709	20.853	0					6	4	2	0	0	0	0.45645	1	2649	2649		3.5965	2.0042	1	32633			57649	6675	33013	33014	70621	70621					0.0701046392207445
WYWRRRPK	8	Unmodified	_WYWRRRPK_					0	0	0		ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	416.568469	1246.68358	0.36134	0.00015052	3.6668	0.0015275	4.0282	0.001678	416.90429418279723	20.934	0.1416	20.881	20.835	20.977	-0.052912	0.041757	0.0041593	NaN	3.5965	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11996			57650	6675	33013	33014							0.0701046392207445
YAAAGLCYW	9	Unmodified	_YAAAGLCYW_					0	0	0		DNAH9|p.S3267Y|1|0.16|ENSG00000007174|chr17:11854295-11854295|C/A|missense_variant	DNAH9|p.S3267Y|1|0.16|ENSG00000007174|chr17:11854295-11854295|C/A|missense_variant	DNAH9|p.S3267Y|1|0.16|ENSG00000007174|chr17:11854295-11854295|C/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.8030090332031	2	509.228571	1016.44259	-0.023033	-1.1729E-05	-3.6449	-0.0018561	-3.6679	-0.0018678	509.22668989337217	28.343	0.67194	28.344	28.104	28.776	0.0004673					27	23	2	0	0	0	0.22431	1	4922	4922		20.871	5.024	1	99938			57651	268	33014	33015	70622	70622					-0.06497532900039005
YAAKQTLIL	9	Unmodified	_YAAKQTLIL_					0	0	0			REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.26226806640625	2	510.808042	1019.60153	0.34904	0.00017829	-0.11427	-5.8369E-05	0.23477	0.00011992	510.80789079552835	57.616	0.38768	57.616	57.466	57.854	0					15	13	2	0	0	0	0.21389	1	13931	13931		25.399	6.1423	1	225890	+		57652	17840	33015	33016	70623	70623					0.09251503999769284
YAAKQTLIL	9	Unmodified	_YAAKQTLIL_					0	0	0			REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	510.808042	1019.60153	0.28275	0.00014443	0.017684	9.0331E-06	0.30044	0.00015347	510.8079848754294	57.348	0.52658	57.434	57.018	57.544	0.085617	-0.075845	3.5259E-05	NaN	25.399	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366990	+		57653	17840	33015	33016							0.09251503999769284
YAAKQTLIL	9	Unmodified	_YAAKQTLIL_					0	0	0			REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	510.808042	1019.60153	0.10219	5.22E-05	0.14065	7.1845E-05	0.24284	0.00012404	510.8080639401935	57.496	0.40897	57.479	57.197	57.606	-0.0172	-0.030902	0.00016088	NaN	25.399	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231700	+		57654	17840	33015	33016							0.09251503999769284
YAALAGPTV	9	Unmodified	_YAALAGPTV_					0	0	0		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.21319580078125	2	431.737086	861.459619	-0.085761	-3.7026E-05	0.091455	3.9485E-05	0.0056945	2.4585E-06	431.7370723978883	52.84	0.59019	52.839	52.61	53.2	-0.00081253					45	21	3	0	0	0	0.21137	1	12481	12481		24.674	0	1	719330			57655	6135	33016	33017	70624	70624					0.02334710977436316
YAALNLESF	9	Unmodified	_YAALNLESF_					0	0	0			REV__ENSG00000185666|ENST00000358763|SYN3	REV__ENSG00000185666|ENST00000358763|SYN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.2582397460938	2	514.258382	1026.50221	0.23925	0.00012303	0.15423	7.9312E-05	0.39347	0.00020235	514.2581308358119	73.289	0.69975	73.289	72.989	73.689	0					48	24	3	0	0	0	0.017871	2	18738	18738;18771		67.344	9.6219	1	425780	+		57656	18398	33017	33018	70625;70626	70625					-0.009979386849863658
YAALNLESF	9	Unmodified	_YAALNLESF_					0	0	0			REV__ENSG00000185666|ENST00000358763|SYN3	REV__ENSG00000185666|ENST00000358763|SYN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.68798828125	2	514.258382	1026.50221	0.23925	0.00012303	0.15423	7.9312E-05	0.39347	0.00020235	514.2581308358119	73.289	0.69975	73.289	72.989	73.689	0					48	24	3	0	0	0	0.21389	1	18694	18694		25.399	3.8623	1	425780	+		57657	18398	33017	33018	70627	70627					-0.009979386849863658
YAALNLESF	9	Unmodified	_YAALNLESF_					0	0	0			REV__ENSG00000185666|ENST00000358763|SYN3	REV__ENSG00000185666|ENST00000358763|SYN3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2582397460938	2	514.258382	1026.50221	0.12182	6.2649E-05	0.96615	0.00049685	1.088	0.0005595	514.2584276013699	73.247	0.59752	73.301	73.065	73.663	0.053833					42	20	3	0	0	0	0.027237	2	18715	18715;18758		61.357	23.182	1	372140	+		57658	18398	33017	33018	70628;70629	70628					-0.009979386849863658
YAALNLESF	9	Unmodified	_YAALNLESF_					0	0	0			REV__ENSG00000185666|ENST00000358763|SYN3	REV__ENSG00000185666|ENST00000358763|SYN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.6879272460938	2	514.258382	1026.50221	0.12182	6.2649E-05	0.96615	0.00049685	1.088	0.0005595	514.2584276013699	73.247	0.59752	73.301	73.065	73.663	0.053833					42	20	3	0	0	0	0.1854	1	18681	18681		32.305	3.2239	1	372140	+		57659	18398	33017	33018	70630	70630					-0.009979386849863658
YAAQLPALF	9	Unmodified	_YAAQLPALF_					0	0	0		ENSG00000141456|ENST00000572293|PELP1;PELP1|p.P491Lfs*7|1|0.28|ENSG00000141456|chr17:4674620-4674620|G/-|frameshift_variant	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.2731018066406	2	497.273835	992.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.063	1	90.153	89.653	90.653	0.090668								0	0	0	0.23091	1	23851	23851		12.532	0	1				57660	4382	33018	33019	70631	70631					0.03655259419883805
YAAQLPALF	9	Unmodified	_YAAQLPALF_					0	0	0		ENSG00000141456|ENST00000572293|PELP1;PELP1|p.P491Lfs*7|1|0.28|ENSG00000141456|chr17:4674620-4674620|G/-|frameshift_variant	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2728576660156	2	497.273835	992.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.952	1	89.953	89.453	90.453	0.0003891								0	0	0	0.24522	1	23812	23812		7.9102	0	1				57661	4382	33018	33019	70632	70632					0.03655259419883805
YACAIQVCCF	10	Unmodified	_YACAIQVCCF_					0	0	0		nc|ENSG00000272987|P0C617|OR5AL1	nc|ENSG00000272987|P0C617|OR5AL1	nc|ENSG00000272987|P0C617|OR5AL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.7354125976562	2	560.734848	1119.45514	0.29653	0.00016627	1.4045	0.00078754	1.701	0.00095381	560.7352620720774	70.191	0.66887	70.191	69.843	70.512	0					65	24	5	0	0	0	0.36002	1	17791	17791		10.824	0.64053	1	341080			57662	12993	33019	33020	70633	70633					-0.09980580823662422
YADDPEEIF	9	Unmodified	_YADDPEEIF_					0	0	0			REV__nc|ENSG00000156687|Q6UXZ4-2|UNC5D	REV__nc|ENSG00000156687|Q6UXZ4-2|UNC5D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3153076171875	2	549.734937	1097.45532	0.59867	0.00032911	0.7897	0.00043412	1.3884	0.00076324	549.7349832634907	63.949	0.16649	63.949	63.859	64.026	0					7	5	2	0	0	0	0.21137	1	15855	15855		18.135	6.4947	1	97762	+		57663	16755	33020	33021	70634	70634					-0.08950843026809707
YADIPVRRP	9	Unmodified	_YADIPVRRP_					0	0	0		nc|ENSG00000141562|Q9UHQ1-4|NARF;nc|ENSG00000141562|Q9UHQ1-3|NARF;ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF;ENST00000577812.5_1_17:80442656-80446030:+|nuORF	nc|ENSG00000141562|Q9UHQ1-4|NARF	nc|ENSG00000141562|Q9UHQ1-4|NARF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.79541015625	2	543.806365	1085.59818	0.60647	0.0003298	3.1783	0.0017284	3.7847	0.0020582	544.3102787016934	37.529	0.34003	37.622	37.423	37.763	0.093014					20	12	2	0	0	0	0.24311	1	7682	7682		16.942	0	1	175750			57664	4394	33021	33022	70635	70635					0.05880253945770164
YADLSLPGKN	10	Unmodified	_YADLSLPGKN_					0	0	0		ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	ENSG00000179409|ENST00000319004|GEMIN4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2667236328125	2	539.282389	1076.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.095	1	68.173	67.673	68.673	0.078041								0	0	0	0.33945	1	17129	17129		19.257	2.1704	1				57665	7123	33022	33023	70636	70636					0.01501135235048423
YAEDTPHF	8	Unmodified	_YAEDTPHF_					0	0	0			REV__ENSG00000126461|ENST00000360565|SCAF1	REV__ENSG00000126461|ENST00000360565|SCAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.57965087890625	2	490.211432	978.408311	-0.049893	-2.4458E-05	-2.9553	-0.0014487	-3.0052	-0.0014732	490.21009849067764	13.898	0.24837	13.793	13.685	13.933	-0.10466					12	8	2	0	0	0	0.34319	1	562	562		5.7604	0.52976	1	15059	+		57666	15310	33023	33024	70637	70637					-0.08175657787273849
YAEDTPHF	8	Unmodified	_YAEDTPHF_					0	0	0			REV__ENSG00000126461|ENST00000360565|SCAF1	REV__ENSG00000126461|ENST00000360565|SCAF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	490.211432	978.408311	-0.032498	-1.5931E-05	-3.4151	-0.0016741	-3.4476	-0.0016901	490.20975835318825	13.951	0.22974	13.885	13.747	13.977	-0.066068	0.058993	-0.00064507	NaN	5.7604	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20271	+		57667	15310	33023	33024							-0.08175657787273849
YAFAFIQV	8	Unmodified	_YAFAFIQV_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.7840881347656	2	479.755278	957.496004	0.40986	0.00019663	-0.061674	-2.9588E-05	0.34818	0.00016704	479.755213859464	84.77	0.81229	84.77	84.47	85.282	0					67	30	4	0	0	0	0.28235	1	22195	22195		38.151	12.752	1	383320			57668	7937;11149	33024	33025	70638	70638					0.015555878741338347
YAFAFIQV	8	Unmodified	_YAFAFIQV_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.78387451171875	2	479.755278	957.496004	0.48298	0.00023171	-0.69964	-0.00033566	-0.21666	-0.00010395	479.7549797135358	84.664	0.78624	84.745	84.369	85.156	0.080887					56	30	3	0	0	0	0.23297	1	22170	22170		44.407	17.523	1	306200			57669	7937;11149	33024	33025	70639	70639					0.015555878741338347
YAFAFIQV	8	Unmodified	_YAFAFIQV_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7837829589844	2	479.755278	957.496004	0.47563	0.00022818	-0.45296	-0.00021731	0.02267	1.0876E-05	479.7551658529343	84.773	0.87945	84.76	84.415	85.294	-0.01284					53	35	2	0	0	0	0.27422	1	22179	22179		32.117	6.7177	1	322810			57670	7937;11149	33024	33025	70640	70640					0.015555878741338347
YAFAHILTV	9	Unmodified	_YAFAHILTV_					0	0	0		ENSG00000135956|ENST00000258439|TMEM127	ENSG00000135956|ENST00000258439|TMEM127	ENSG00000135956|ENST00000258439|TMEM127	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7876586914062	2	517.78711	1033.55967	0.25508	0.00013208	0.23913	0.00012382	0.4942	0.00025589	517.7875311889943	64.913	0.70625	64.913	64.699	65.405	0					57	25	3	0	0	0	2.3185E-05	2	16156	16156;16209		153.26	108.86	1	1196600			57671	3927	33025	33026	70641;70642	70641					0.04422948311230357
YAFAHILTV	9	Unmodified	_YAFAHILTV_					0	0	0		ENSG00000135956|ENST00000258439|TMEM127	ENSG00000135956|ENST00000258439|TMEM127	ENSG00000135956|ENST00000258439|TMEM127	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.7877197265625	2	517.78711	1033.55967	0.30835	0.00015966	0.14149	7.3261E-05	0.44984	0.00023292	517.7875211713878	64.837	0.86227	64.929	64.66	65.523	0.09288					67	31	4	0	0	0	2.3185E-05	2	16117	16117;16166		153.26	108.86	1	1294400			57672	3927	33025	33026	70643;70644	70643					0.04422948311230357
YAFAHILTV	9	Unmodified	_YAFAHILTV_					0	0	0		ENSG00000135956|ENST00000258439|TMEM127	ENSG00000135956|ENST00000258439|TMEM127	ENSG00000135956|ENST00000258439|TMEM127	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7877197265625	2	517.78711	1033.55967	0.084932	4.3977E-05	0.68676	0.00035559	0.77169	0.00039957	517.787638510241	64.943	0.78843	64.931	64.69	65.478	-0.011337					60	28	3	0	0	0	2.3185E-05	1	16188	16188		153.26	108.86	1	1457900			57673	3927	33025	33026	70645	70645					0.04422948311230357
YAFFKLLR	8	Unmodified	_YAFFKLLR_					0	0	0		ENST00000476968.5_1_1:32560475-32568271:+|nuORF;nc|ENSG00000121775|Q9GZU3-4|TMEM39B;ENST00000468135.5_1_1:32542241-32568271:+|nuORF;ENSG00000121775|ENST00000336294|TMEM39B	ENST00000476968.5_1_1:32560475-32568271:+|nuORF	ENST00000476968.5_1_1:32560475-32568271:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3134765625	2	529.313295	1056.61204	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.52	1	115.52	115.02	116.02	0								0	0	0	0.37992	1	29935	29935		0.79363	0	1				57674	3008	33026	33027	70646	70646					0.08599531444838249
YAFIMKTLK	9	Unmodified	_YAFIMKTLK_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;UBR3|p.G1350Afs*47|1|0.06|ENSG00000144357|chr2:170007007-170007007|G/-|frameshift_variant	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2946166992188	2	557.820095	1113.62564	0.33464	0.00018667	2.7393	0.001528	3.0739	0.0017147	557.8205822441043	66.111	0.35871	66.098	65.919	66.278	-0.013596					21	12	2	0	0	0	0.24739	1	16497	16497		8.5933	2.8614	1	161010			57675	4577	33027	33028	70647	70647					0.07337021161765733
YAFLGTALLP	10	Unmodified	_YAFLGTALLP_					0	0	0		ENST00000484975.5_1_20:44472013-44472349:-|nuORF;ENSG00000101473|ENST00000217455|ACOT8	ENST00000484975.5_1_20:44472013-44472349:-|nuORF	ENST00000484975.5_1_20:44472013-44472349:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2935791015625	2	533.302593	1064.59063	0.37819	0.00020169	0.37518	0.00020008	0.75337	0.00040177	533.3027022169771	79.7	1.1069	79.761	79.335	80.442	0.061417					85	42	3	0	0	0	0.36786	1	20711	20711		9.3831	0.78985	1	339870			57676	1706	33028	33029	70648	70648					0.060921016254724236
YAFLGTALLP	10	Unmodified	_YAFLGTALLP_					0	0	0		ENST00000484975.5_1_20:44472013-44472349:-|nuORF;ENSG00000101473|ENST00000217455|ACOT8	ENST00000484975.5_1_20:44472013-44472349:-|nuORF	ENST00000484975.5_1_20:44472013-44472349:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	533.302593	1064.59063	0.51895	0.00027675	0.15974	8.5191E-05	0.67869	0.00036195	533.3027895571045	79.764	0.95198	79.764	79.315	80.267	0	0.010471	-0.00010286	NaN	9.3831	73	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302670			57677	1706	33028	33029							0.060921016254724236
YAFLGTALLP	10	Unmodified	_YAFLGTALLP_					0	0	0		ENST00000484975.5_1_20:44472013-44472349:-|nuORF;ENSG00000101473|ENST00000217455|ACOT8	ENST00000484975.5_1_20:44472013-44472349:-|nuORF	ENST00000484975.5_1_20:44472013-44472349:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	533.302593	1064.59063	0.37819	0.00020169	0.37518	0.00020008	0.75337	0.00040177	533.3027022169771	79.7	1.1069	79.761	79.335	80.442	0.061417	0.0079293	0.00012692	NaN	9.3831	85	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339870			57678	1706	33028	33029							0.060921016254724236
YAFLGTALLP	10	Unmodified	_YAFLGTALLP_					0	0	0		ENST00000484975.5_1_20:44472013-44472349:-|nuORF;ENSG00000101473|ENST00000217455|ACOT8	ENST00000484975.5_1_20:44472013-44472349:-|nuORF	ENST00000484975.5_1_20:44472013-44472349:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	533.302593	1064.59063	0.52723	0.00028117	0.18351	9.7868E-05	0.71074	0.00037904	533.3027527819218	79.764	1.1971	79.735	79.305	80.502	-0.028923	-0.0184	-7.7507E-05	NaN	9.3831	88	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321220			57679	1706	33028	33029							0.060921016254724236
YAFNMKATV	9	Oxidation (M)	_YAFNM(Oxidation (M))KATV_		YAFNM(1)KATV		YAFNM(190)KATV	0	0	1		ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7611694335938	2	530.760235	1059.50592	0.87473	0.00046427	-1.5534	-0.00082447	-0.67864	-0.00036019	530.7603565878056	37.463	2.5544	37.463	36.875	39.43	0					298	91	6	0	0	0	5.5754E-11	7	7642	7642;7676;7710;7760;7807;7906;7965		185.05	124.98	1	48693000			57680	2285	33029	33030	70649;70650;70651;70652;70653;70654;70655	70649		283			-0.02145592182796463
YAFNMKATV	9	Oxidation (M)	_YAFNM(Oxidation (M))KATV_		YAFNM(1)KATV		YAFNM(200)KATV	0	0	1		ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.76123046875	2	530.760235	1059.50592	0.44936	0.0002385	-1.0745	-0.0005703	-0.62513	-0.00033179	530.7606063439658	37.132	2.4864	37.22	36.868	39.355	0.087406					245	90	6	0	0	0	1.0985E-11	8	7596	7596;7647;7698;7748;7795;7838;7891;7950		199.75	130.64	1	46506000			57681	2285	33029	33030	70656;70657;70658;70659;70660;70661;70662;70663	70656		283			-0.02145592182796463
YAFNMKATV	9	Oxidation (M)	_YAFNM(Oxidation (M))KATV_		YAFNM(1)KATV		YAFNM(200)KATV	0	0	1		ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.76123046875	2	530.760235	1059.50592	0.61362	0.00032568	-1.2152	-0.00064497	-0.60156	-0.00031928	530.7605453826357	37.088	2.4932	37.181	36.872	39.365	0.093018					277	90	6	0	0	0	1.0985E-11	8	7595	7595;7645;7656;7704;7754;7861;7903;7948		199.75	130.64	1	52154000			57682	2285	33029	33030	70664;70665;70666;70667;70668;70669;70670;70671	70664		283			-0.02145592182796463
YAFNMKATV	9	Oxidation (M)	_YAFNM(Oxidation (M))KATV_		YAFNM(1)KATV		YAFNM(63)KATV	0	0	1		ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	ENSG00000109971|ENST00000534624|HSPA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7601928710938	2	530.760235	1059.50592	0.50483	0.00026794	-0.34065	-0.0001808	0.16418	8.7138E-05	530.7600973405237	39.589	1.245	39.689	39.372	40.617	0.099407					63	44	2	0	0	0	0.023967	2	8424	8376;8424		62.573	26.446	1	460400			57683	2285	33029	33030	70672;70673	70673		283			-0.02145592182796463
YAFPKAVSV	9	Unmodified	_YAFPKAVSV_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3;ENST00000581642.1_1_17:80193878-80194172:+|nuORF;ENST00000584781.5_1_17:80193878-80195055:+|nuORF;ENST00000579572.1_1_17:80193878-80195110:+|nuORF	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2737731933594	2	491.273835	980.533118	0.40864	0.00020075	-0.4579	-0.00022495	-0.049259	-2.42E-05	491.2735624654078	51.567	1.1602	51.567	51.222	52.382	0					128	42	4	0	0	0	0.0098873	3	12038	11989;12038;12082		79.596	50.515	1	16496000			57684	4390	33030	33031	70674;70675;70676	70675					0.04207259419899856
YAFPKAVSV	9	Unmodified	_YAFPKAVSV_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3;ENST00000581642.1_1_17:80193878-80194172:+|nuORF;ENST00000584781.5_1_17:80193878-80195055:+|nuORF;ENST00000579572.1_1_17:80193878-80195110:+|nuORF	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.8191833496094	2	491.273835	980.533118	0.38393	0.00018861	-0.59199	-0.00029083	-0.20806	-0.00010221	491.27323565733565	52.469	0.14019	52.469	52.354	52.494	0					5	4	2	0	0	0	0.20881	1	12295	12295		16.149	1.5674	1	157420			57685	4390	33030	33031	70677	70677					0.04207259419899856
YAFPKAVSV	9	Unmodified	_YAFPKAVSV_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3;ENST00000581642.1_1_17:80193878-80194172:+|nuORF;ENST00000584781.5_1_17:80193878-80195055:+|nuORF;ENST00000579572.1_1_17:80193878-80195110:+|nuORF	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.27374267578125	2	491.273835	980.533118	0.2691	0.0001322	-0.29124	-0.00014308	-0.022144	-1.0879E-05	491.2736388711619	51.694	1.3768	51.704	51.321	52.698	0.0095673					141	50	4	0	0	0	0.0098873	4	12084	11998;12042;12084;12135		79.596	50.515	1	15029000			57686	4390	33030	33031	70678;70679;70680;70681	70680					0.04207259419899856
YAFPKAVSV	9	Unmodified	_YAFPKAVSV_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3;ENST00000581642.1_1_17:80193878-80194172:+|nuORF;ENST00000584781.5_1_17:80193878-80195055:+|nuORF;ENST00000579572.1_1_17:80193878-80195110:+|nuORF	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	491.273835	980.533118	0.34463	0.00016931	-0.39343	-0.00019328	-0.048805	-2.3977E-05	491.27359932726904	51.537	1.1397	51.584	51.245	52.385	0.046577	-0.034389	-7.9152E-06	NaN	79.596	120	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17399000			57687	4390	33030	33031							0.04207259419899856
YAFPKSITV	9	Unmodified	_YAFPKSITV_					0	0	0		SLC16A1|p.N250Kfs*36|1|0.16|ENSG00000155380|chr1:112917656-112917657|-/T|frameshift_variant;nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	SLC16A1|p.N250Kfs*36|1|0.16|ENSG00000155380|chr1:112917656-112917657|-/T|frameshift_variant	SLC16A1|p.N250Kfs*36|1|0.16|ENSG00000155380|chr1:112917656-112917657|-/T|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7207641601562	2	513.286943	1024.55933	0.95325	0.00048929	0.13693	7.0284E-05	1.0902	0.00055957	513.287027624023	55.962	0.47545	55.962	55.682	56.158	0					25	16	2	0	0	0	0.19839	1	13348	13348		28.487	4.4663	1	497480			57688	5174	33031	33032	70682	70682					0.048035285913556436
YAFPKSITV	9	Unmodified	_YAFPKSITV_					0	0	0		SLC16A1|p.N250Kfs*36|1|0.16|ENSG00000155380|chr1:112917656-112917657|-/T|frameshift_variant;nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	SLC16A1|p.N250Kfs*36|1|0.16|ENSG00000155380|chr1:112917656-112917657|-/T|frameshift_variant	SLC16A1|p.N250Kfs*36|1|0.16|ENSG00000155380|chr1:112917656-112917657|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2874145507812	2	513.286943	1024.55933	0.65689	0.00033717	-0.13657	-7.0101E-05	0.52031	0.00026707	513.2869167663423	55.885	0.51707	55.955	55.592	56.109	0.070885					25	18	2	0	0	0	0.07944	1	13388	13388		41.956	7.0235	1	769710			57689	5174	33031	33032	70683	70683					0.048035285913556436
YAFPKSITV	9	Unmodified	_YAFPKSITV_					0	0	0		SLC16A1|p.N250Kfs*36|1|0.16|ENSG00000155380|chr1:112917656-112917657|-/T|frameshift_variant;nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1	SLC16A1|p.N250Kfs*36|1|0.16|ENSG00000155380|chr1:112917656-112917657|-/T|frameshift_variant	SLC16A1|p.N250Kfs*36|1|0.16|ENSG00000155380|chr1:112917656-112917657|-/T|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	513.286943	1024.55933	0.74857	0.00038423	-0.23813	-0.00012223	0.51044	0.000262	513.2867531673057	56.081	0.41343	56.061	55.853	56.267	-0.019081	0.068387	-0.00010995	NaN	41.956	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	718950			57690	5174	33031	33032							0.048035285913556436
YAFQPENQI	9	Unmodified	_YAFQPENQI_					0	0	0		nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	nc|ENSG00000133858|O60293-2|ZFC3H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3217163085938	2	555.266739	1108.51892	0.37802	0.0002099	-0.097004	-5.3863E-05	0.28101	0.00015604	555.2667713773704	42.182	0.3777	42.273	42.007	42.385	0.091362					21	12	2	0	0	0	0.21905	1	9161	9161		23.148	5.0021	1	285200			57691	3734	33032	33033	70684	70684					-0.030994377990509747
YAFSVWRM	8	Unmodified	_YAFSVWRM_					0	0	0		ENSG00000233608|ENST00000612363|TWIST2;ENSG00000122691|ENST00000242261|TWIST1	ENSG00000233608|ENST00000612363|TWIST2	ENSG00000233608|ENST00000612363|TWIST2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7599487304688	2	530.257662	1058.50077	0.36912	0.00019573	0.6811	0.00036116	1.0502	0.00055688	530.7600402163175	26.195	0.88331	26.195	25.846	26.729	0					44	30	2	0	0	0	0.44842	1	4271	4271		6.3541	1.1234	1	225180			57692	3062	33033	33034	70685	70685					-0.026138512547504433
YAFTFIHF	8	Unmodified	_YAFTFIHF_					0	0	0			REV__nc|ENSG00000235818|Q8TDU5|VN1R17P	REV__nc|ENSG00000235818|Q8TDU5|VN1R17P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3117065429688	2	523.260728	1044.5069	0.43186	0.00022598	-3.9536	-0.0020688	-3.5217	-0.0018428	523.258724789405	32.873	0.46347	32.928	32.682	33.146	0.054375					27	16	3	0	0	0	0.30749	1	6269	6269		28.173	1.832	1	227240	+		57693	23205	33034	33035	70686	70686					-0.013570097515867019
YAFTLPLFK	9	Unmodified	_YAFTLPLFK_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.31298828125	2	550.312961	1098.61137	0.35102	0.00019317	-0.39596	-0.0002179	-0.044939	-2.473E-05	550.3125014711503	76.535	0.54722	76.535	76.31	76.858	0					44	19	3	0	0	0	0.09064	1	19706	19706		56.177	18.203	1	458370			57694	8601	33035	33036	70687	70687					0.06600692005144992
YAFTLPLFK	9	Unmodified	_YAFTLPLFK_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.3126831054688	2	550.312961	1098.61137	0.25781	0.00014188	-0.60347	-0.00033209	-0.34565	-0.00019022	550.3124103469123	76.478	0.68814	76.532	76.32	77.008	0.053413					52	24	3	0	0	0	0.066761	1	19686	19686		65.235	19.214	1	480730			57695	8601	33035	33036	70688	70688					0.06600692005144992
YAFTLPLFK	9	Unmodified	_YAFTLPLFK_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3132934570312	2	550.312961	1098.61137	0.56787	0.00031251	-0.56836	-0.00031277	-0.00048444	-2.6659E-07	550.3123444297777	76.585	0.48279	76.553	76.346	76.828	-0.031487					42	17	3	0	0	0	0.050251	1	19705	19705		71.922	10.565	1	422960			57696	8601	33035	33036	70689	70689					0.06600692005144992
YAFVLSPEAF	10	Unmodified	_YAFVLSPEAF_					0	0	0			REV__nc|ENSG00000152520|Q58A45-2|PAN3	REV__nc|ENSG00000152520|Q58A45-2|PAN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.7218627929688	2	572.289682	1142.56481	0.36812	0.00021067	-1.5809	-0.00090474	-1.2128	-0.00069407	572.2893089297419	79.728	0.46279	79.789	79.643	80.106	0.061417					24	16	2	0	0	0	0.31165	1	20660	20660		15.847	1.2655	1	91290	+		57697	16583	33036	33037	70690	70690					-0.0007679261682369543
YAFVRPVI	8	Unmodified	_YAFVRPVI_					0	0	0		nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8;ENST00000568689.5_1_16:733170-734340:-|nuORF;ENST00000565302.5_1_16:733531-734319:-|nuORF;ENST00000569441.5_1_16:733170-733950:-|nuORF	nc|ENSG00000161999|Q96S16-2|JMJD8	nc|ENSG00000161999|Q96S16-2|JMJD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2867736816406	2	482.78437	963.554188	0.40592	0.00019597	0.3322	0.00016038	0.73812	0.00035635	482.78453901362064	66.168	1.5275	66.168	65.608	67.135	0					148	54	3	0	0	0	0.39956	1	16458	16458		19.439	3.5918	1	12562000			57698	5541	33037	33038	70691	70691					0.07095269519413705
YAFVRPVI	8	Unmodified	_YAFVRPVI_					0	0	0		nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8;ENST00000568689.5_1_16:733170-734340:-|nuORF;ENST00000565302.5_1_16:733531-734319:-|nuORF;ENST00000569441.5_1_16:733170-733950:-|nuORF	nc|ENSG00000161999|Q96S16-2|JMJD8	nc|ENSG00000161999|Q96S16-2|JMJD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.286865234375	2	482.78437	963.554188	0.44008	0.00021247	0.22153	0.00010695	0.66161	0.00031942	482.78446000410713	66.017	1.6142	66.101	65.541	67.156	0.083832					152	58	3	0	0	0	0.39956	1	16403	16403		19.439	2.4967	1	12245000			57699	5541	33037	33038	70692	70692					0.07095269519413705
YAFVRPVI	8	Unmodified	_YAFVRPVI_					0	0	0		nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8;ENST00000568689.5_1_16:733170-734340:-|nuORF;ENST00000565302.5_1_16:733531-734319:-|nuORF;ENST00000569441.5_1_16:733170-733950:-|nuORF	nc|ENSG00000161999|Q96S16-2|JMJD8	nc|ENSG00000161999|Q96S16-2|JMJD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2868347167969	2	482.78437	963.554188	0.32018	0.00015458	0.33095	0.00015978	0.65113	0.00031435	482.78451689465476	66.138	1.8044	66.124	65.556	67.36	-0.013588					161	64	3	0	0	0	0.39956	1	16433	16433		19.439	4.8573	1	13385000			57700	5541	33037	33038	70693	70693					0.07095269519413705
YAGAILEV	8	Unmodified	_YAGAILEV_					0	0	0		ENST00000401030.4_1_1:87346375-87352853:-|nuORF;ENST00000467557.1_1_1:87346375-87379497:-|nuORF;ENST00000331835.9_2_1:87346375-87379803:-|nuORF;nc|ENSG00000183291|O60613-2|SELENOF;ENSG00000183291|ENST00000331835|SELENOF	ENST00000401030.4_1_1:87346375-87352853:-|nuORF	ENST00000401030.4_1_1:87346375-87352853:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.2316589355469	2	418.231636	834.448719	-0.15625	-6.5351E-05	0.192	8.0302E-05	0.035748	1.4951E-05	418.23161661025375	61.125	1.0088	61.125	60.962	61.971	0					57	37	3	0	0	0	0.073545	1	15000	15000		67.035	21.014	1	1493000			57701	7356	33038	33039	70694	70694					0.02487308603144811
YAGAILEV	8	Unmodified	_YAGAILEV_					0	0	0		ENST00000401030.4_1_1:87346375-87352853:-|nuORF;ENST00000467557.1_1_1:87346375-87379497:-|nuORF;ENST00000331835.9_2_1:87346375-87379803:-|nuORF;nc|ENSG00000183291|O60613-2|SELENOF;ENSG00000183291|ENST00000331835|SELENOF	ENST00000401030.4_1_1:87346375-87352853:-|nuORF	ENST00000401030.4_1_1:87346375-87352853:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.2314453125	2	418.231636	834.448719	0.015835	6.6229E-06	-0.037596	-1.5724E-05	-0.021761	-9.1011E-06	418.2315352185489	61.073	0.9139	61.17	61.01	61.924	0.096985					51	33	2	0	0	0	0.073545	2	15008	14957;15008		67.035	32.848	1	1778600			57702	7356	33038	33039	70695;70696	70696					0.02487308603144811
YAGAILEV	8	Unmodified	_YAGAILEV_					0	0	0		ENST00000401030.4_1_1:87346375-87352853:-|nuORF;ENST00000467557.1_1_1:87346375-87379497:-|nuORF;ENST00000331835.9_2_1:87346375-87379803:-|nuORF;nc|ENSG00000183291|O60613-2|SELENOF;ENSG00000183291|ENST00000331835|SELENOF	ENST00000401030.4_1_1:87346375-87352853:-|nuORF	ENST00000401030.4_1_1:87346375-87352853:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.2311706542969	2	418.231636	834.448719	0.051347	2.1475E-05	0.072813	3.0453E-05	0.12416	5.1928E-05	418.23159701801256	61.148	0.58414	61.138	60.968	61.552	-0.0094566					34	21	2	0	0	0	0.049524	1	14995	14995		78.445	38.487	1	1186200			57703	7356	33038	33039	70697	70697					0.02487308603144811
YAGFAAVGLLF	11	Unmodified	_YAGFAAVGLLF_					0	0	0		ENSG00000151229|ENST00000280871|SLC2A13	ENSG00000151229|ENST00000280871|SLC2A13	ENSG00000151229|ENST00000280871|SLC2A13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.8206787109375	2	564.808042	1127.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.497	1	81.473	80.973	81.973	-0.02404								0	0	0	0.3382	1	21213	21213		10.824	0.024421	1				57704	4946	33039	33040	70698	70698					0.042835039997498825
YAGGIKSIF	9	Unmodified	_YAGGIKSIF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	ENST00000573023.6_1_16:67984709-67996179:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.74920654296875	2	478.26601	954.517468	0.13353	6.3864E-05	0.05678	2.7156E-05	0.19031	9.1019E-05	478.265747510289	44.199	0.27021	44.199	43.985	44.255	0					11	9	2	0	0	0	0.24739	1	9735	9735		13.508	4.9146	1	117440			57705	3129	33040	33041	70699	70699					0.03838972902849491
YAGKALLNNV	10	Unmodified	_YAGKALLNNV_					0	0	0		ENST00000324559.8_1_11:22304690-22304876:+|nuORF	ENST00000324559.8_1_11:22304690-22304876:+|nuORF	ENST00000324559.8_1_11:22304690-22304876:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8428955078125	2	531.800749	1061.58694	0.53594	0.00028501	0.69711	0.00037072	1.233	0.00065573	531.8008902014034	44.635	0.13873	44.703	44.627	44.765	0.068573					6	4	2	0	0	0	0.31165	1	9924	9924		15.847	0	1	130900			57706	9401	33041	33042	70700	70700					0.058614318515992636
YAGKYVLF	8	Unmodified	_YAGKYVLF_					0	0	0		ENST00000519214.5_1_5:150400805-150405029:+|nuORF;ENSG00000211445|ENST00000388825|GPX3	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.76361083984375	2	480.763104	959.511654	0.48455	0.00023295	-0.61918	-0.00029768	-0.13464	-6.4729E-05	480.76299254829456	55.161	0.29487	55.142	55.025	55.319	-0.019077					18	10	2	0	0	0	0.2705	1	13154	13154		34.187	19.349	1	295000			57707	11452	33042	33043	70701	70701					0.030278743911821948
YAGKYVLF	8	Unmodified	_YAGKYVLF_					0	0	0		ENST00000519214.5_1_5:150400805-150405029:+|nuORF;ENSG00000211445|ENST00000388825|GPX3	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	ENST00000519214.5_1_5:150400805-150405029:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	480.763104	959.511654	0.48359	0.00023249	-0.75237	-0.00036171	-0.26878	-0.00012922	480.7629549007869	54.969	0.38676	54.969	54.811	55.198	0	-0.086439	-5.6708E-05	NaN	34.187	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282440			57708	11452	33042	33043							0.030278743911821948
YAGSWGTDED	10	Unmodified	_YAGSWGTDED_					0	0	0			REV__nc|ENSG00000165689|Q96C92-2|ENTR1	REV__nc|ENSG00000165689|Q96C92-2|ENTR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.300537109375	2	550.711993	1099.40943	0.40346	0.00022219	0.53228	0.00029313	0.93574	0.00051532	550.7120661222647	63.175	0.51271	63.175	62.93	63.443	0					25	18	2	0	0	0	0.31482	1	15581	15581		7.2892	7.2892	1	236520	+		57709	17256	33043	33044	70702	70702					-0.13629488209016927
YAGSWGTDED	10	Unmodified	_YAGSWGTDED_					0	0	0			REV__nc|ENSG00000165689|Q96C92-2|ENTR1	REV__nc|ENSG00000165689|Q96C92-2|ENTR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3001708984375	2	550.711993	1099.40943	0.44094	0.00024283	0.0036386	2.0038E-06	0.44458	0.00024483	550.7119295456519	63.229	0.38492	63.22	63.024	63.408	-0.0085564					20	13	2	0	0	0	0.318	1	15588	15588		3.9444	3.9444	1	246470	+		57710	17256	33043	33044	70703	70703					-0.13629488209016927
YAGVAGYGTF	10	Unmodified	_YAGVAGYGTF_					0	0	0		nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	nc|ENSG00000154358|Q5VST9|OBSCN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.26593017578125	2	503.23745	1004.46035	0.37698	0.00018971	-0.056737	-2.8552E-05	0.32025	0.00016116	503.23742680912665	68.178	0.56241	68.159	67.808	68.37	-0.01915					30	19	2	0	0	0	0.21885	1	17118	17118		34.102	5.0209	1	321080			57711	5124	33044	33045	70704	70704					-0.041704943735112465
YAHRRVPVT	9	Unmodified	_YAHRRVPVT_					0	0	0			REV__ENSG00000198108|ENST00000305031|CHSY3	REV__ENSG00000198108|ENST00000305031|CHSY3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7828979492188	2	549.811982	1097.60941	0.63392	0.00034854	-2.419	-0.00133	-1.7851	-0.00098148	550.3118064935164	48.417	0.5038	48.461	48.191	48.695	0.04332					30	18	2	0	0	0	0.25417	1	11077	11077		8.5933	0	1	252940	+		57712	18800	33045	33046	70705	70705					0.06451076039888903
YAIEVGFRF	9	Unmodified	_YAIEVGFRF_					0	0	0			REV__ENSG00000134452|ENST00000362091|FBH1	REV__ENSG00000134452|ENST00000362091|FBH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.8142700195312	2	551.290017	1100.56548	0.3427	0.00018893	-3.4326	-0.0018924	-3.0899	-0.0017035	551.2883796491559	40.655	0.9454	40.755	40.479	41.425	0.099407					42	34	2	0	0	0	0.24739	1	8661	8661		8.5933	0	1	232000	+		57713	15676	33046	33047	70706	70706					0.019220468228922982
YAIFFIVFT	9	Unmodified	_YAIFFIVFT_					0	0	0		ENST00000535009.5_1_11:68816453-68846494:+|nuORF;ENST00000442692.2_1_11:68822646-68853210:+|nuORF;ENSG00000162341|ENST00000294309|TPCN2	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3065185546875	2	560.807511	1119.60047	0.4192	0.00023509	-2.4256	-0.0013603	-2.0064	-0.0011252	560.8055969811595	88.3	0.4409	88.389	88.107	88.548	0.089203					28	20	2	0	0	0	0.25526	1	23287	23287		7.9102	1.187	1	66093			57714	5559	33047	33048	70707	70707					0.04545289630846128
YAIFYLTRVSL	11	Unmodified	_YAIFYLTRVSL_					0	0	0			REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF	REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.7532043457031	3	449.255334	1344.74417	0.51247	0.00023023	-0.083652	-3.7581E-05	0.42882	0.00019265	449.2547797625789	50.982	0.73139	50.982	50.623	51.354	0					69	26	4	0	0	0	0.33202	1	11924	11924		2.8433	0	1	1078900	+		57715	16982	33048	33049	70708	70708					0.0855909167109985
YAILTHGIFSG	11	Unmodified	_YAILTHGIFSG_					0	0	0		nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2	nc|ENSG00000147224|P60891-2|PRPS1	nc|ENSG00000147224|P60891-2|PRPS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3429565429688	2	589.813856	1177.61316	0.28587	0.00016861	2.6903	0.0015868	2.9761	0.0017554	589.8152686882135	82.188	0.14474	82.257	82.183	82.328	0.068985					7	5	2	0	0	0	0.3259	1	21440	21440		13.906	1.6654	1	88294			57716	1728	33049	33050	70709	70709					0.031457010230724336
YAINIKLNF	9	Unmodified	_YAINIKLNF_					0	0	0		Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|74|3|anti-sense	Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|74|3|anti-sense	Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|74|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8341674804688	2	548.313492	1094.61243	0.54186	0.00029711	-0.053298	-2.9224E-05	0.48856	0.00026789	548.3137091256575	68.767	0.32479	68.748	68.624	68.949	-0.019157					14	11	2	0	0	0	0.23783	1	17369	17369		18.135	1.1927	1	83249			57717	12356	33050	33051	70710	70710					0.0689090637404206
YAIQLAALQE	10	Unmodified	_YAIQLAALQE_					0	0	0			REV__LAS1L|p.E345A|1|0.43|ENSG00000001497|chrX:65524973-65524973|T/G|missense_variant	REV__LAS1L|p.E345A|1|0.43|ENSG00000001497|chrX:65524973-65524973|T/G|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.294921875	2	560.305864	1118.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.251	1	38.251	37.751	38.751	0								0	0	0	0.33404	1	7957	7957		21.537	3.3906	1		+		57718	22836	33051	33052	70711	70711					0.04261994786179457
YAISNATRLL	10	Unmodified	_YAISNATRLL_					0	0	0		nc|ENSG00000215018|Q2UY09-3|COL28A1;nc|ENSG00000215018|Q2UY09-2|COL28A1;ENSG00000215018|ENST00000399429|COL28A1	nc|ENSG00000215018|Q2UY09-3|COL28A1	nc|ENSG00000215018|Q2UY09-3|COL28A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8068237304688	2	561.319306	1120.62406	0.26338	0.00014784	-0.90686	-0.00050904	-0.64348	-0.0003612	561.3186173902786	80.944	0.71457	80.917	80.678	81.392	-0.026817					56	29	2	0	0	0	0.28434	1	21039	21039		25.399	1.3787	1	477930			57719	8397	33052	33053	70712	70712					0.06857103397373976
YAIVWVNGV	9	Unmodified	_YAIVWVNGV_					0	0	0		GUSB|p.Q568Lfs*24|1|0.45|ENSG00000169919|chr7:65964403-65964409|TGGTACT/-|frameshift_variant;nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB;ENST00000476486.5_1_7:65444492-65445384:-|nuORF;ENST00000510805.1_1_4:144480837-144481284:+|nuORF;nc|ENSG00000272578|Q6P575|GUSBP11;nc|ENSG00000169919|P08236-3|GUSB	GUSB|p.Q568Lfs*24|1|0.45|ENSG00000169919|chr7:65964403-65964409|TGGTACT/-|frameshift_variant	GUSB|p.Q568Lfs*24|1|0.45|ENSG00000169919|chr7:65964403-65964409|TGGTACT/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.30010986328125	2	510.779285	1019.54402	0.33032	0.00016872	0.16219	8.2842E-05	0.4925	0.00025156	510.7793677323133	58.638	0.50727	58.73	58.446	58.953	0.091305					24	17	2	0	0	0	0.24311	1	14260	14260		16.942	0	1	268630			57720	6404	33053	33054	70713	70713					0.03502661794186679
YAKEILSVW	9	Unmodified	_YAKEILSVW_					0	0	0			REV__ENSG00000131375|ENST00000253693|CAPN7	REV__ENSG00000131375|ENST00000253693|CAPN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3193359375	2	554.8055	1107.59645	0.59183	0.00032835	1.6788	0.00093143	2.2707	0.0012598	554.8062092293703	47.405	0.68533	47.405	47.112	47.797	0					41	24	2	0	0	0	0.19839	1	10687	10687		15.847	0	1	468650	+		57721	15507	33054	33055	70714	70714					0.04695200137143729
YAKPHRQRPYL	11	Unmodified	_YAKPHRQRPYL_					0	0	0		ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENST00000472481.5_1_19:49990877-49994169:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.3105773925781	3	476.933477	1427.7786	0.22157	0.00010568	1.1152	0.0005319	1.3368	0.00063758	476.93391253395396	53.408	0.67619	53.465	53.193	53.869	0.056255					37	25	2	0	0	0	0.33296	1	12533	12533		2.6312	0.19645	1	435730			57722	10894	33055	33056	70715	70715					0.08182352602602805
YAKVLLLI	8	Unmodified	_YAKVLLLI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.81243896484375	2	466.812596	931.61064	0.010247	4.7832E-06	-0.04654	-2.1725E-05	-0.036293	-1.6942E-05	466.81249336778285	67.972	0.62254	67.972	67.732	68.355	0					44	22	3	0	0	0	0.082568	1	17103	17103		63.563	16.642	1	630790			57723	3320	33056	33057	70716	70716					0.1420989735609055
YAKVLLLI	8	Unmodified	_YAKVLLLI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.81243896484375	2	466.812596	931.61064	0.1535	7.1654E-05	-0.12976	-6.0575E-05	0.023735	1.108E-05	466.8124194782672	67.876	0.61945	67.954	67.744	68.363	0.078041					51	21	3	0	0	0	0.065797	1	17067	17067		70.716	23.795	1	532700			57724	3320	33056	33057	70717	70717					0.1420989735609055
YAKVLLLI	8	Unmodified	_YAKVLLLI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.8125	2	466.812596	931.61064	0.21153	9.8745E-05	-0.18822	-8.7865E-05	0.023306	1.088E-05	466.81238436578315	68.017	0.55959	68.001	67.727	68.287	-0.016296					41	19	3	0	0	0	0.058048	1	17110	17110		74.396	27.475	1	574050			57725	3320	33056	33057	70718	70718					0.1420989735609055
YALEPTVYF	9	Unmodified	_YALEPTVYF_					0	0	0		ENST00000554270.5_1_14:88936247-89016761:-|nuORF;ENSG00000070778|ENST00000556564|PTPN21;ENST00000554178.1_1_14:88978906-89016761:-|nuORF;ENST00000554628.5_1_14:88959357-89016761:-|nuORF	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8348388671875	2	551.776408	1101.53826	0.74605	0.00041165	0.14134	7.7987E-05	0.88739	0.00048964	551.7765296360948	54.959	0.46567	54.959	54.708	55.174	0					26	16	2	0	0	0	0.24739	1	13036	13036		13.508	13.508	1	517370			57726	942	33057	33058	70719	70719					-0.008444815081702473
YALEPTVYF	9	Unmodified	_YALEPTVYF_					0	0	0		ENST00000554270.5_1_14:88936247-89016761:-|nuORF;ENSG00000070778|ENST00000556564|PTPN21;ENST00000554178.1_1_14:88978906-89016761:-|nuORF;ENST00000554628.5_1_14:88959357-89016761:-|nuORF	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	ENST00000554270.5_1_14:88936247-89016761:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8351440429688	2	551.776408	1101.53826	0.68314	0.00037694	0.73449	0.00040527	1.4176	0.00078221	551.7768647537869	55.085	0.45064	55.066	54.869	55.319	-0.019081					28	16	2	0	0	0	0.21137	1	13070	13070		24.674	6.5389	1	830750			57727	942	33057	33058	70720	70720					-0.008444815081702473
YALFYLSF	8	Unmodified	_YALFYLSF_					0	0	0			REV__nc|ENSG00000124767|Q04760-2|GLO1	REV__nc|ENSG00000124767|Q04760-2|GLO1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2791748046875	2	512.262936	1022.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.424	1	74.477	73.977	74.977	0.052361								0	0	0	0.31676	1	19064	19064		26.341	2.3207	1		+		57728	15248	33058	33059	70721	70721					0.0009645467132486374
YALHEFNPF	9	Unmodified	_YALHEFNPF_					0	0	0			REV__nc|ENSG00000118762|Q13563-4|PKD2	REV__nc|ENSG00000118762|Q13563-4|PKD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.3410034179688	2	569.271824	1136.5291	0.21487	0.00012232	3.0682	0.0017466	3.283	0.0018689	569.2732820460456	66.486	0.30684	66.473	66.327	66.634	-0.013588					16	10	2	0	0	0	0.23783	1	16670	16670		18.135	5.0925	1	110610	+		57729	15021	33059	33060	70722	70722					-0.03370830073822617
YALKCQRGF	9	Unmodified	_YALKCQRGF_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8397827148438	2	543.281669	1084.54878	0.56983	0.00030958	-4.4681	-0.0024274	-3.8982	-0.0021178	543.2789770066929	52.822	0.26644	52.822	52.746	53.013	-0.00081253					13	9	2	0	0	0	0.23783	1	12398	12398		7.9102	0	1	185950	+		57730	17339	33060	33061	70723	70723					0.009892226652937097
YALLDVQRAE	10	Unmodified	_YALLDVQRAE_					0	0	0			REV__nc|ENSG00000151116|Q8IX04-5|UEVLD	REV__nc|ENSG00000151116|Q8IX04-5|UEVLD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3425903320312	2	589.31422	1176.61389	0.45355	0.00026728	0.12926	7.6173E-05	0.58281	0.00034346	589.3138783894904	82.248	0.12109	82.248	82.166	82.287	0					5	3	2	0	0	0	0.31267	1	21473	21473		6.2058	0	1	162360	+		57731	16526	33061	33062	70724	70724					0.032644956721242124
YALLFGRTV	9	Unmodified	_YALLFGRTV_					0	0	0		ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.8209838867188	2	520.300384	1038.58622	0.33896	0.00017636	-0.068418	-3.5598E-05	0.27054	0.00014076	520.3006186330413	69.406	0.54094	69.472	69.123	69.664	0.06604					24	18	2	0	0	0	0.23783	1	17453	17453		18.135	7.0205	1	118740			57732	8124	33062	33063	70725	70725					0.06846637202556849
YALLSCLPE	9	Unmodified	_YALLSCLPE_					0	0	0			REV__ENST00000370631.3_1_10:99433987-99434278:+|nuORF	REV__ENST00000370631.3_1_10:99433987-99434278:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.75726318359375	2	504.757161	1007.49977	0.57975	0.00029263	-1.2501	-0.00063098	-0.67032	-0.00033835	504.75668071782457	65.854	1.1425	65.854	65.545	66.688	0					91	40	4	0	0	0	0.25314	1	16472	16472		15.847	1.0089	1	1187600	+		57733	20386	33063	33064	70726	70726					-0.0036811041433111313
YALLSCLPE	9	Unmodified	_YALLSCLPE_					0	0	0			REV__ENST00000370631.3_1_10:99433987-99434278:+|nuORF	REV__ENST00000370631.3_1_10:99433987-99434278:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2635803222656	2	504.757161	1007.49977	0.57975	0.00029263	-1.2501	-0.00063098	-0.67032	-0.00033835	504.75668071782457	65.854	1.1425	65.854	65.545	66.688	0					91	40	4	0	0	0	0.20651	1	16440	16440		20.454	0	1	1187600	+		57734	20386	33063	33064	70727	70727					-0.0036811041433111313
YALPGTFAL	9	Unmodified	_YALPGTFAL_					0	0	0			REV__ENSG00000178401|ENST00000549441|DNAJC22	REV__ENSG00000178401|ENST00000549441|DNAJC22	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.7601318359375	2	476.760561	951.506569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.195	1	74.247	73.747	74.747	0.052361								0	0	0	0.19804	1	18993	18993		23.148	1.4018	1		+		57735	18034	33064	33065	70728	70728					0.028875705285713593
YALPPVAPVL	10	Unmodified	_YALPPVAPVL_					0	0	0		ENSG00000187140|ENST00000371116|FOXD3	ENSG00000187140|ENST00000371116|FOXD3	ENSG00000187140|ENST00000371116|FOXD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.3473510742188	2	520.312961	1038.61137	0.36189	0.00018829	-0.40545	-0.00021096	-0.043564	-2.2667E-05	520.3127146566283	71.497	0.4894	71.554	71.293	71.783	0.056572					32	17	2	0	0	0	0.25344	1	18224	18224		32.117	0	1	685460			57736	7667	33065	33066	70729	70729					0.09360692005134297
YALQALVV	8	Unmodified	_YALQALVV_					0	0	0		nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	nc|ENSG00000114867|Q04637-4|EIF4G1	nc|ENSG00000114867|Q04637-4|EIF4G1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.7631530761719	2	438.763104	875.511654	0.1019	4.4709E-05	-0.0905	-3.9708E-05	0.011399	5.0016E-06	438.76296509585563	71.723	0.62957	71.78	71.568	72.198	0.056572					45	22	3	0	0	0	0.30517	1	18242	18242		30.225	3.3412	1	452580			57737	2591	33066	33067	70730	70730					0.06891874391192232
YALQAYALF	9	Unmodified	_YALQAYALF_					0	0	0			REV__nc|ENSG00000118762|Q13563-4|PKD2	REV__nc|ENSG00000118762|Q13563-4|PKD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2950439453125	2	530.279118	1058.54368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	92.6	1	92.6	92.1	93.1	0								0	0	0	0.24311	1	24634	24634		8.5933	0.68312	1		+		57738	15021	33067	33068	70731	70731					0.016752420743159746
YALQAYALF	9	Unmodified	_YALQAYALF_					0	0	0			REV__nc|ENSG00000118762|Q13563-4|PKD2	REV__nc|ENSG00000118762|Q13563-4|PKD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2797241210938	2	530.279118	1058.54368	0.45498	0.00024127	-0.6378	-0.00033821	-0.18282	-9.6945E-05	530.2790607172662	89.672	1.3868	89.762	89.143	90.53	0.090561					210	99	3	0	0	0	0.155	2	23701	23701;23791		30.225	7.0764	1	199020	+		57739	15021	33067	33068	70732;70733	70732					0.016752420743159746
YALQAYALF	9	Unmodified	_YALQAYALF_					0	0	0			REV__nc|ENSG00000118762|Q13563-4|PKD2	REV__nc|ENSG00000118762|Q13563-4|PKD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.2786254882812	2	530.279118	1058.54368	0.5959	0.00031599	-0.64112	-0.00033998	-0.04523	-2.3984E-05	530.2789075596693	89.841	1.5456	89.841	89.181	90.727	-0.00080872					194	115	3	0	0	0	0.20344	1	23718	23718		23.148	3.8914	1	209340	+		57740	15021	33067	33068	70734	70734					0.016752420743159746
YALQERRK	8	Unmodified	_YALQERRK_					0	0	0			REV__nc|ENSG00000065328|Q7L590|MCM10	REV__nc|ENSG00000065328|Q7L590|MCM10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.29248046875	2	532.30399	1062.59343	0.68247	0.00036328	1.3832	0.00073627	2.0657	0.0010996	532.3040046139454	29.507	0.64384	29.507	29.244	29.888	0					38	22	3	0	0	0	0.34378	1	5380	5380		3.9444	0	1	61482	+		57741	13662	33068	33069	70735	70735					0.06463369802986563
YALQINVI	8	Unmodified	_YALQINVI_					0	0	0		ENSG00000072818|ENST00000158762|ACAP1	ENSG00000072818|ENST00000158762|ACAP1	ENSG00000072818|ENST00000158762|ACAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.7657775878906	2	467.273835	932.533118	-0.22088	-0.00010321	0.55018	0.00025708	0.3293	0.00015387	467.27398936972594	73.626	0.55774	73.626	73.335	73.893	0					47	19	3	0	0	0	0.073545	1	18827	18827		67.035	20.114	1	722790			57742	990	33069	33070	70736	70736					0.06415259419895847
YALQINVI	8	Unmodified	_YALQINVI_					0	0	0		ENSG00000072818|ENST00000158762|ACAP1	ENSG00000072818|ENST00000158762|ACAP1	ENSG00000072818|ENST00000158762|ACAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7658996582031	2	467.273835	932.533118	-0.050534	-2.3613E-05	0.31099	0.00014532	0.26046	0.00012171	467.2739526818097	73.584	0.58965	73.637	73.361	73.95	0.052864					45	20	3	0	0	0	0.12267	2	18811	18811;18860		56.541	18.39	1	793650			57743	990	33069	33070	70737;70738	70737					0.06415259419895847
YALQINVI	8	Unmodified	_YALQINVI_					0	0	0		ENSG00000072818|ENST00000158762|ACAP1	ENSG00000072818|ENST00000158762|ACAP1	ENSG00000072818|ENST00000158762|ACAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.76593017578125	2	467.273835	932.533118	0.14201	6.6359E-05	0.12973	6.0618E-05	0.27174	0.00012698	467.27383517131307	73.666	0.51281	73.635	73.397	73.91	-0.030655					42	18	3	0	0	0	0.073545	2	18814	18814;18832		67.035	20.114	1	719030			57744	990	33069	33070	70739;70740	70739					0.06415259419895847
YALRRRELT	9	Unmodified	_YALRRRELT_					0	0	0			REV__TNS2|p.T701Cfs*52|1|0.31|ENSG00000111077|chr12:53059738-53059747|GCCTACAGCA/-|frameshift_variant	REV__TNS2|p.T701Cfs*52|1|0.31|ENSG00000111077|chr12:53059738-53059747|GCCTACAGCA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3434448242188	2	589.343646	1176.67274	0.38128	0.00022471	-0.79684	-0.00046961	-0.41556	-0.00024491	589.3432116322725	96.957	1.2457	96.952	96.744	97.99	-0.0055466					169	129	2	0	0	0	0.32415	1	25937	25937		5.2307	0	1	176000	+		57745	14702	33070	33071	70741	70741					0.09147016757128767
YALVSVLNLG	10	Unmodified	_YALVSVLNLG_					0	0	0		ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2;nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;SLC47A2|p.F397Lfs*11|1|0.22|ENSG00000180638|chr17:19703103-19703103|A/-|frameshift_variant	ENSG00000180638|ENST00000433844|SLC47A2	ENSG00000180638|ENST00000433844|SLC47A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.794921875	2	524.8055	1047.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.646	1	67.724	67.224	68.224	0.078041								0	0	0	0.32028	1	16990	16990		25.399	7.2643	1				57746	7195	33071	33072	70742	70742					0.07455200137110296
YANLSVPVV	9	Unmodified	_YANLSVPVV_					0	0	0		ENSG00000149380|ENST00000331597|P4HA3;nc|ENSG00000149380|Q7Z4N8-3|P4HA3	ENSG00000149380|ENST00000331597|P4HA3	ENSG00000149380|ENST00000331597|P4HA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2711486816406	2	481.271293	960.528032	-0.37482	-0.00018039	0.055964	2.6934E-05	-0.31885	-0.00015346	481.271060708428	59.896	0.68125	59.991	59.714	60.395	0.095089					42	24	2	0	0	0	0.21303	1	14644	14644		21.747	3.6117	1	606340			57747	4862	33072	33073	70743	70743					0.04618955557282334
YAPIQHGWWL	10	Unmodified	_YAPIQHGWWL_					0	0	0			REV__ENST00000476162.5_1_6:30887870-30890700:+|nuORF	REV__ENST00000476162.5_1_6:30887870-30890700:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.8873291015625	3	424.217102	1269.62948	-0.05965	-2.5305E-05	1.8378	0.00077964	1.7782	0.00075434	424.5520667876951	29.473	0.58545	29.485	29.272	29.858	0.012266					30	19	2	0	0	0	0.31119	1	5317	5317		18.373	0.50992	1	105830	+		57748	15858	33073	33074	70744	70744					0.005448269798534966
YAPNRRKSRRF	11	Unmodified	_YAPNRRKSRRF_					0	0	0		ENSG00000006047|ENST00000007699|YBX2	ENSG00000006047|ENST00000007699|YBX2	ENSG00000006047|ENST00000007699|YBX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.7791442871094	3	484.276126	1449.80655	0.28294	0.00013702	3.7647	0.0018232	4.0476	0.0019602	484.2787325369138	68.018	0.55605	68.096	67.834	68.39	0.078041					34	19	3	0	0	0	0.3322	1	17088	17088		4.7159	1.8726	1	264500			57749	351	33074	33075	70745	70745					0.0996367558266229
YAPRRRSHC	9	Unmodified	_YAPRRRSHC_					0	0	0		ENST00000321394.11_1_6:160210531-160210732:-|nuORF	ENST00000321394.11_1_6:160210531-160210732:-|nuORF	ENST00000321394.11_1_6:160210531-160210732:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.2911376953125	2	573.290891	1144.56723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.23	1	119.26	118.76	119.76	0.026253								0	0	0	0.26829	1	30848	30848		0	0	1				57750	9384	33075	33076	70746	70746					0.0007277735990101064
YAPTGLVIT	9	Unmodified	_YAPTGLVIT_					0	0	0			REV__ENSG00000139517|ENST00000316334|LNX2	REV__ENSG00000139517|ENST00000316334|LNX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.3011779785156	2	467.765843	933.517133	0.21605	0.00010106	-4.028	-0.0018842	-3.8119	-0.0017831	467.7628266122117	83.124	0.16645	83.197	83.158	83.324	0.073097					6	5	2	0	0	0	0.25066	1	21748	21748		3.9444	3.254	1	29739	+		57751	15988	33076	33077	70747	70747					0.0477155318297946
YAPYNPVT	8	Unmodified	_YAPYNPVT_					0	0	0		nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	462.93804931640625	2	462.726718	923.438883	0.22141	0.00010245	-0.50762	-0.00023489	-0.28621	-0.00013244	462.7266535214365	48.666	0.33084	48.698	48.522	48.852	0.032043					16	11	2	0	0	0	0.32435	1	11176	11176		7.2892	0	1	179370			57752	4586	33077	33078	70748	70748					-0.025898794022282345
YAPYVNRI	8	Unmodified	_YAPYVNRI_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.2693176269531	2	498.269084	994.523616	0.21232	0.00010579	-0.052386	-2.6103E-05	0.15994	7.9691E-05	498.2690017024134	40.996	0.84277	40.996	40.688	41.531	0					99	30	4	0	0	0	0.050494	4	8788	8734;8743;8788;8841		77.984	31.963	1	7134900			57753	5048	33078	33079	70749;70750;70751;70752	70751					0.026134911343774547
YAPYVNRI	8	Unmodified	_YAPYVNRI_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.2690734863281	2	498.269084	994.523616	0.49713	0.00024771	-0.30761	-0.00015327	0.18952	9.4433E-05	498.26884356390315	40.721	1.0101	40.813	40.531	41.541	0.09267					101	37	4	0	0	0	0.029359	2	8711	8711;8753		89.427	38.41	1	7575300			57754	5048	33078	33079	70753;70754	70753					0.026134911343774547
YAPYVNRI	8	Unmodified	_YAPYVNRI_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.2684631347656	2	498.269084	994.523616	0.29416	0.00014657	-0.15157	-7.5521E-05	0.14259	7.1048E-05	498.2689076616738	40.647	0.9714	40.747	40.479	41.451	0.099407					94	35	5	0	0	0	0.050494	3	8643	8643;8687;8739		77.984	39.833	1	8035000			57755	5048	33078	33079	70755;70756;70757	70755					0.026134911343774547
YAQAEVLTL	9	Unmodified	_YAQAEVLTL_					0	0	0		ENST00000459877.1_1_1:110768565-110775591:+|nuORF;ENSG00000116396|ENST00000438661|KCNC4	ENST00000459877.1_1_1:110768565-110775591:+|nuORF	ENST00000459877.1_1_1:110768565-110775591:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.84454345703125	2	504.274032	1006.53351	0.26538	0.00013383	-0.6647	-0.00033519	-0.39932	-0.00020137	504.27351063601316	73.954	1.2244	73.923	73.502	74.726	-0.030655					114	43	5	0	0	0	0.1854	1	19069	19069		19.257	5.3509	1	2344800			57756	2723	33079	33080	70758	70758					0.030506343490856125
YAQKPQMDIH	10	Unmodified	_YAQKPQMDIH_					0	0	0		ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B;ENST00000588772.1_1_18:76914524-76954520:+|nuORF	ENSG00000166377|ENST00000426216|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.88409423828125	3	410.869374	1229.58629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.235	1	20.121	19.621	20.621	-0.11419								0	0	0	0.37664	1	2477	2477		3.5871	0	1				57757	6070	33080	33081	70759	70759					-0.019317308597464944
YAREVIEL	8	Unmodified	_YAREVIEL_					0	0	0		ENSG00000154479|ENST00000447353|CFAP210	ENSG00000154479|ENST00000447353|CFAP210	ENSG00000154479|ENST00000447353|CFAP210	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7734069824219	2	496.7742	991.533846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.579	1	87.573	87.073	88.073	-0.0056229								0	0	0	0.33432	1	23083	23083		21.747	3.6117	1				57758	5132	33081	33082	70760	70760					0.037740540689469526
YARLRLEQ	8	Unmodified	_YARLRLEQ_					0	0	0			REV__ENST00000564651.5_1_16:57496627-57504171:+|nuORF	REV__ENST00000564651.5_1_16:57496627-57504171:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2669677734375	2	524.79854	1047.58253	0.14217	7.4608E-05	-0.64903	-0.00034061	-0.50687	-0.000266	524.7983644000466	13.019	0.31158	12.92	12.785	13.097	-0.09929					15	10	2	0	0	0	0.34434	1	264	264		0.79363	0	1	56853	+		57759	14344	33082	33083	70761	70761					0.060639674286903755
YARLRYRDTSL	11	Unmodified	_YARLRYRDTSL_					0	0	0		ENSG00000235106|ENST00000603928|BRD3OS	ENSG00000235106|ENST00000603928|BRD3OS	ENSG00000235106|ENST00000603928|BRD3OS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.7717590332031	3	471.924759	1412.75245	0.24026	0.00011338	-0.20041	-9.4577E-05	0.03985	1.8806E-05	471.9246025259412	37.759	0.79124	37.85	37.555	38.347	0.090881					81	28	4	0	0	0	0.33287	1	7717	7717		2.8433	2.514	1	1280600			57760	8491	33083	33084	70762	70762					0.06258038640476116
YARLRYRDTSL	11	Unmodified	_YARLRYRDTSL_					0	0	0		ENSG00000235106|ENST00000603928|BRD3OS	ENSG00000235106|ENST00000603928|BRD3OS	ENSG00000235106|ENST00000603928|BRD3OS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.7719421386719	3	471.924759	1412.75245	0.20457	9.6541E-05	-0.13098	-6.1811E-05	0.073591	3.473E-05	471.92461927242204	37.711	0.76344	37.809	37.503	38.266	0.097527					80	27	4	0	0	0	0.33287	1	7736	7736		0.45452	0	1	1216800			57761	8491	33083	33084	70763	70763					0.06258038640476116
YARLVNEL	8	Unmodified	_YARLVNEL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.7498779296875	2	489.274367	976.53418	0.0028466	1.3928E-06	-0.069407	-3.3959E-05	-0.06656	-3.2566E-05	489.2746233225676	14.506	0.45335	14.506	14.335	14.789	0					40	15	3	0	0	0	0.34272	1	708	708		4.3292	0	1	142480			57762	3288	33084	33085	70764	70764					0.04497473788796924
YARVDKYF	8	Unmodified	_YARVDKYF_					0	0	0			REV__ENSG00000203972|ENST00000371197|GLYATL3	REV__ENSG00000203972|ENST00000371197|GLYATL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7431640625	2	531.274367	1060.53418	0.055401	2.9433E-05	-0.82604	-0.00043885	-0.77064	-0.00040942	531.2738663798133	12.87	0.20222	12.803	12.702	12.905	-0.067496					11	6	2	0	0	0	0.34414	1	260	260		2.0598	0	1	61925	+		57763	18913	33085	33086	70765	70765					0.0063347378879825555
YASFDAQVF	9	Unmodified	_YASFDAQVF_					0	0	0		ENSG00000147488|ENST00000689386|ST18;ENSG00000196132|ENST00000328439|MYT1;nc|ENSG00000196132|Q01538-2|MYT1	ENSG00000147488|ENST00000689386|ST18;ENSG00000196132|ENST00000328439|MYT1	ENSG00000147488|ENST00000689386|ST18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.800537109375	2	524.242732	1046.47091	0.5186	0.00027187	1.9413	0.0010177	2.4599	0.0012896	524.2436304639798	71.847	0.4036	71.904	71.654	72.057	0.056572					22	14	2	0	0	0	0.19839	1	18227	18227		28.487	5.3384	1	136090			57764	4769;7825	33086	33087	70766	70766					-0.050465117191151876
YASGDGGGLL	10	Unmodified	_YASGDGGGLL_					0	0	0			REV__ENST00000561288.1_1_15:58889677-59041905:-|nuORF	REV__ENST00000561288.1_1_15:58889677-59041905:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.7658386230469	2	455.219257	908.423961	-0.034576	-1.574E-05	3.5774	0.0016285	3.5428	0.0016127	455.22054751146845	65.02	0.41933	65.109	64.876	65.295	0.088882					24	15	2	0	0	0	0.31745	1	16229	16229		4.3292	0	1	222410	+		57765	22304	33087	33088	70767	70767					-0.03391371270220134
YASQDVFQDL	10	Unmodified	_YASQDVFQDL_					0	0	0		ENST00000563872.5_1_15:42867889-42930286:+|nuORF	ENST00000563872.5_1_15:42867889-42930286:+|nuORF	ENST00000563872.5_1_15:42867889-42930286:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.8290405273438	2	593.274761	1184.53497	0.87398	0.00051851	-0.46942	-0.00027849	0.40457	0.00024002	593.2742459259969	77.709	0.57684	77.678	77.456	78.033	-0.031334					43	20	3	0	0	0	0.26905	1	20031	20031		31.268	5.0002	1	409890			57766	11935	33088	33089	70768	70768					-0.049917763527901116
YASSISSSSSS	11	Unmodified	_YASSISSSSSS_					0	0	0			REV__nc|ENSG00000111087|P08151-3|GLI1	REV__nc|ENSG00000111087|P08151-3|GLI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.73291015625	2	531.732926	1061.4513	0.75652	0.00040227	-0.50222	-0.00026704	0.25431	0.00013522	531.7325101366561	47.936	1.0604	47.936	47.634	48.694	0					122	37	4	0	0	0	0.41411	3	10891	10891;10940;10986		9.3831	9.3831	1	10647000	+		57767	14703	33089	33090	70769;70770;70771	70769					-0.07696932520502742
YASSISSSSSS	11	Unmodified	_YASSISSSSSS_					0	0	0			REV__nc|ENSG00000111087|P08151-3|GLI1	REV__nc|ENSG00000111087|P08151-3|GLI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7327270507812	2	531.732926	1061.4513	0.76349	0.00040597	-0.53615	-0.00028509	0.22734	0.00012088	531.7324764539409	47.861	1.1509	47.909	47.594	48.745	0.04752					126	42	4	0	0	0	0.41411	1	10877	10877		9.3831	9.3831	1	12374000	+		57768	14703	33089	33090	70772	70772					-0.07696932520502742
YASSISSSSSS	11	Unmodified	_YASSISSSSSS_					0	0	0			REV__nc|ENSG00000111087|P08151-3|GLI1	REV__nc|ENSG00000111087|P08151-3|GLI1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.732926	1061.4513	0.75652	0.00040227	-0.50222	-0.00026704	0.25431	0.00013522	531.7325101366561	47.936	1.0604	47.936	47.634	48.694	0	0.029603	-2.7676E-07	NaN	9.3831	122	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10647000	+		57769	14703	33089	33090							-0.07696932520502742
YATDTCELP	9	Unmodified	_YATDTCELP_					0	0	0		nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	nc|ENSG00000132849|Q8NI35-5|PATJ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7528381347656	2	506.718233	1011.42191	0.29799	0.000151	1.6277	0.00082477	1.9257	0.00097576	507.22073836162406	79.815	0.59069	79.876	79.618	80.209	0.061417					28	21	2	0	0	0	0.25417	1	20739	20739		4.756	0	1	83567			57770	3670	33090	33091	70773	70773					-0.08334168070359738
YATFIVFLF	9	Unmodified	_YATFIVFLF_					0	0	0			REV__ADCY4|p.V1051Kfs*2|1|0.04|ENSG00000129467|chr14:24318499-24318500|-/TT|frameshift_variant	REV__ADCY4|p.V1051Kfs*2|1|0.04|ENSG00000129467|chr14:24318499-24318500|-/TT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.3403930664062	2	560.807511	1119.60047	0.32674	0.00018324	-1.6629	-0.00093259	-1.3362	-0.00074936	561.3085596347549	92.604	0.2929	92.693	92.561	92.854	0.089203					26	20	2	0	0	0	0.24739	1	24676	24676		2.0598	1.4583	1	54916	+		57771	13080	33091	33092	70774	70774					0.04545289630846128
YATLLRKPF	9	Unmodified	_YATLLRKPF_					0	0	0			REV__nc|ENSG00000228970|P0CB48|UBTFL6	REV__nc|ENSG00000228970|P0CB48|UBTFL6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.8463134765625	2	554.829309	1107.64407	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.827	1	75.827	75.327	76.327	0								0	0	0	0.20953	1	19499	19499		19.439	6.9074	1		+		57772	23201	33092	33093	70775	70775					0.09454899127990757
YATQSHQWYS	10	Unmodified	_YATQSHQWYS_					0	0	0		nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.3080444335938	2	635.778002	1269.54145	0.60928	0.00038737	-0.62588	-0.00039792	-0.016595	-1.055E-05	635.7776180121457	44.96	0.71877	45.028	44.651	45.37	0.068569					31	25	2	0	0	0	0.26905	1	10103	10103		31.268	16.02	1	192350			57773	727	33093	33094	70776	70776					-0.08253838401424218
YATQSHQWYS	10	Unmodified	_YATQSHQWYS_					0	0	0		nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	635.778002	1269.54145	0.72283	0.00045956	-0.67418	-0.00042863	0.048644	3.0927E-05	635.7773561541406	44.981	0.69747	45.056	44.643	45.34	0.075047	0.014061	-4.0272E-05	NaN	31.268	32	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139670			57774	727	33093	33094							-0.08253838401424218
YATWRPLL	8	Unmodified	_YATWRPLL_					0	0	0			REV__ENST00000540046.5_1_12:121001406-121001742:+|nuORF	REV__ENST00000540046.5_1_12:121001406-121001742:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	509.7533264160156	2	510.287277	1018.56	0.44026	0.00022466	0.23564	0.00012024	0.6759	0.0003449	510.2874207078434	57.395	0.94439	57.395	56.633	57.578	0					53	34	3	0	0	0	0.31375	1	13813	13813		26.341	9.399	1	246690	+		57775	22109	33094	33095	70777	70777					0.051463680310803284
YAVAGRTRDE	10	Unmodified	_YAVAGRTRDE_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.845458984375	2	569.285994	1136.55744	-0.053778	-3.0615E-05	-2.4906	-0.0014179	-2.5444	-0.0014485	569.2847626204434	34.306	0.77326	34.373	33.875	34.648	0.06636					37	27	2	0	0	0	0.31629	1	6652	6652		10.074	1.4806	1	174240			57776	6767	33095	33096	70778	70778					-0.005381321645245407
YAVALGGNTVI	11	Unmodified	_YAVALGGNTVI_					0	0	0		ENSG00000187918|ENST00000641930|OR51I2	ENSG00000187918|ENST00000641930|OR51I2	ENSG00000187918|ENST00000641930|OR51I2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2904052734375	2	539.300581	1076.58661	0.46494	0.00025074	-0.32931	-0.0001776	0.13563	7.3144E-05	539.3005578228285	51.973	1.0116	52.024	51.351	52.363	0.050571					84	36	3	0	0	0	0.38623	1	12245	12245		13.042	0.51092	1	1503500			57777	7719	33096	33097	70779	70779					0.05138012131783398
YAVALGGNTVI	11	Unmodified	_YAVALGGNTVI_					0	0	0		ENSG00000187918|ENST00000641930|OR51I2	ENSG00000187918|ENST00000641930|OR51I2	ENSG00000187918|ENST00000641930|OR51I2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2901000976562	2	539.300581	1076.58661	0.37501	0.00020225	-0.4068	-0.00021939	-0.031786	-1.7142E-05	539.3005763039871	52.07	1.6979	52.069	50.85	52.548	-0.00081253					133	63	3	0	0	0	0.34542	1	12295	12295		18.146	3.3081	1	1472600			57778	7719	33096	33097	70780	70780					0.05138012131783398
YAVALNLVTF	10	Unmodified	_YAVALNLVTF_					0	0	0			REV__nc|ENSG00000135218|P16671-4|CD36	REV__nc|ENSG00000135218|P16671-4|CD36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.3216552734375	2	555.813325	1109.6121	0.34819	0.00019353	-1.5691	-0.00087213	-1.2209	-0.0006786	555.8128999963093	64.871	0.85606	64.962	64.468	65.324	0.090492					39	31	2	0	0	0	0.30079	1	16015	16015		14.838	0.93222	1	141780	+		57779	22996	33097	33098	70781	70781					0.061674866541807205
YAVALNLVTF	10	Unmodified	_YAVALNLVTF_					0	0	0			REV__nc|ENSG00000135218|P16671-4|CD36	REV__nc|ENSG00000135218|P16671-4|CD36	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	555.813325	1109.6121	0.024459	1.3595E-05	-0.016653	-9.2562E-06	0.0078057	4.3385E-06	555.8132747599519	65.106	0.40882	65.106	64.884	65.293	0	0.071994	0.00068953	NaN	14.838	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128230	+		57780	22996	33097	33098							0.061674866541807205
YAVDHFIED	9	Unmodified	_YAVDHFIED_					0	0	0			REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	REV__nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2682495117188	2	554.750921	1107.48729	0.2448	0.00013581	0.87897	0.00048761	1.1238	0.00062341	554.7514655270553	32.856	0.40948	32.911	32.71	33.119	0.054375					17	14	2	0	0	0	0.25417	1	6283	6283		8.5933	0.68312	1	139090	+		57781	22880	33098	33099	70782	70782					-0.06215430552970247
YAVFSTSSSI	10	Unmodified	_YAVFSTSSSI_					0	0	0		ENST00000419007.5_1_3:50311077-50311539:+|nuORF;ENSG00000012171|ENST00000616701|SEMA3B	ENST00000419007.5_1_3:50311077-50311539:+|nuORF	ENST00000419007.5_1_3:50311077-50311539:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7490234375	2	531.261122	1060.50769	0.15044	7.9925E-05	0.93813	0.00049839	1.0886	0.00057832	531.2616679797738	59.548	0.4956	59.643	59.412	59.907	0.095089					29	17	3	0	0	0	0.33817	1	14551	14551		14.838	0	1	229820			57782	450	33099	33100	70783	70783					-0.020142598931670364
YAVGIQQVLL	10	Unmodified	_YAVGIQQVLL_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8057861328125	2	552.326599	1102.63865	0.54694	0.00030209	-0.39219	-0.00021662	0.15476	8.5476E-05	552.3262711086534	64.663	0.40408	64.663	64.454	64.858	0					27	14	3	0	0	0	0.31051	1	16132	16132		11.64	0.14559	1	168470			57783	3725	33100	33101	70784	70784					0.09143175545523263
YAVGIQQVLL	10	Unmodified	_YAVGIQQVLL_					0	0	0		ENSG00000133704|ENST00000256079|IPO8;nc|ENSG00000133704|O15397-2|IPO8	ENSG00000133704|ENST00000256079|IPO8	ENSG00000133704|ENST00000256079|IPO8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.80615234375	2	552.326599	1102.63865	0.57241	0.00031616	-0.0089296	-4.932E-06	0.56348	0.00031122	552.326613176057	64.559	0.40889	64.652	64.471	64.88	0.09288					25	14	2	0	0	0	0.31051	1	16108	16108		11.64	0.14559	1	126490			57784	3725	33100	33101	70785	70785					0.09143175545523263
YAVILCRIR	9	Unmodified	_YAVILCRIR_					0	0	0		ENSG00000176294|ENST00000557677|OR4N2;ENSG00000184394|ENST00000641086|OR4N5	ENSG00000176294|ENST00000557677|OR4N2	ENSG00000176294|ENST00000557677|OR4N2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8298950195312	2	553.828786	1105.64302	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.39	1	90.39	89.89	90.89	0								0	0	0	0.26258	1	23958	23958		2.3027	0	1				57785	6917	33101	33102	70786	70786					0.09442361487435846
YAVLKILI	8	Unmodified	_YAVLKILI_					0	0	0		ENST00000593809.1_1_19:39360311-39360507:-|nuORF	ENST00000593809.1_1_19:39360311-39360507:-|nuORF	ENST00000593809.1_1_19:39360311-39360507:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.8125915527344	2	466.812596	931.61064	0.1535	7.1654E-05	-0.12976	-6.0575E-05	0.023735	1.108E-05	466.8124194782672	67.876	0.61945	67.954	67.744	68.363	0.078041					51	21	3	0	0	0	0.35375	1	17163	17163		24.674	0	1	532700			57786	12212	33102	33103	70787	70787					0.1420989735609055
YAVLTSTI	8	Unmodified	_YAVLTSTI_					0	0	0		ENSG00000168310|ENST00000393593|IRF2;nc|ENSG00000168310|P14316-2|IRF2	ENSG00000168310|ENST00000393593|IRF2	ENSG00000168310|ENST00000393593|IRF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.802490234375	2	434.244744	866.474934	0.0051735	2.2466E-06	0.76946	0.00033414	0.77464	0.00033638	434.24520590827626	58.623	0.502	58.623	58.298	58.8	0					20	16	2	0	0	0	0.25627	1	14224	14224		46.921	8.7697	1	124880			57787	6267	33103	33104	70788	70788					0.036355777746166495
YAVLVATIAL	10	Unmodified	_YAVLVATIAL_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.3002319335938	2	517.318243	1032.62193	0.4189	0.0002167	-0.30737	-0.00015901	0.11153	5.7697E-05	517.3181214217701	71.523	0.33728	71.523	71.462	71.799	0					16	11	2	0	0	0	0.23403	1	18234	18234		28.487	1.6032	1	380730	+		57788	15485	33104	33105	70789	70789					0.10692674659549084
YAVLVATIAL	10	Unmodified	_YAVLVATIAL_					0	0	0			REV__ENSG00000130827|ENST00000369682|PLXNA3	REV__ENSG00000130827|ENST00000369682|PLXNA3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.30029296875	2	517.318243	1032.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.635	1	71.691	71.191	72.191	0.056572								0	0	0	0.30803	1	18213	18213		26.884	5.137	1		+		57789	15485	33104	33105	70790	70790					0.10692674659549084
YAVRGPIVQ	9	Unmodified	_YAVRGPIVQ_					0	0	0		ENSG00000167701|ENST00000394955|GPT	ENSG00000167701|ENST00000394955|GPT	ENSG00000167701|ENST00000394955|GPT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	502.253662109375	2	501.790184	1001.56581	0.13081	6.5637E-05	0.74623	0.00037445	0.87703	0.00044009	501.79065509184977	52.079	0.64683	52.078	51.848	52.495	-0.00080872					59	23	3	0	0	0	0.20651	1	12261	12261		20.454	0	1	486800			57790	6200	33105	33106	70791	70791					0.06509466542763676
YAVRVIGSNFA	11	Unmodified	_YAVRVIGSNFA_					0	0	0		nc|ENSG00000126216|Q96CW5-3|TUBGCP3;TUBGCP3|p.Q531Rfs*32|1|0.25|ENSG00000126216|chr13:112522475-112522475|A/-|frameshift_variant;nc|ENSG00000126216|Q96CW5-2|TUBGCP3;ENSG00000126216|ENST00000261965|TUBGCP3	nc|ENSG00000126216|Q96CW5-3|TUBGCP3	nc|ENSG00000126216|Q96CW5-3|TUBGCP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.824951171875	2	598.824755	1195.63496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.096	1	56.096	55.596	56.596	0								0	0	0	0.23059	1	13443	13443		29.841	3.5724	1				57791	3260	33106	33107	70792	70792					0.044965057716581214
YAVRVIGSNFA	11	Unmodified	_YAVRVIGSNFA_					0	0	0		nc|ENSG00000126216|Q96CW5-3|TUBGCP3;TUBGCP3|p.Q531Rfs*32|1|0.25|ENSG00000126216|chr13:112522475-112522475|A/-|frameshift_variant;nc|ENSG00000126216|Q96CW5-2|TUBGCP3;ENSG00000126216|ENST00000261965|TUBGCP3	nc|ENSG00000126216|Q96CW5-3|TUBGCP3	nc|ENSG00000126216|Q96CW5-3|TUBGCP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.825439453125	2	598.824755	1195.63496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.029	1	56.1	55.6	56.6	0.070885								0	0	0	0.23059	1	13419	13419		29.841	0	1				57792	3260	33106	33107	70793	70793					0.044965057716581214
YAVWYYPQ	8	Unmodified	_YAVWYYPQ_					0	0	0		nc|ENSG00000126545|P47710-4|CSN1S1;nc|ENSG00000126545|P47710-3|CSN1S1;nc|ENSG00000126545|P47710-2|CSN1S1;ENSG00000126545|ENST00000246891|CSN1S1	nc|ENSG00000126545|P47710-4|CSN1S1	nc|ENSG00000126545|P47710-4|CSN1S1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.27197265625	2	545.255643	1088.49673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.606	1	48.606	48.106	49.106	0								0	0	0	0.33941	1	11135	11135		19.439	0.077054	1				57793	3276	33107	33108	70794	70794					-0.043976174768204146
YAVWYYPQ	8	Unmodified	_YAVWYYPQ_					0	0	0		nc|ENSG00000126545|P47710-4|CSN1S1;nc|ENSG00000126545|P47710-3|CSN1S1;nc|ENSG00000126545|P47710-2|CSN1S1;ENSG00000126545|ENST00000246891|CSN1S1	nc|ENSG00000126545|P47710-4|CSN1S1	nc|ENSG00000126545|P47710-4|CSN1S1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2720947265625	2	545.255643	1088.49673	0.78024	0.00042543	-2.4389	-0.0013298	-1.6587	-0.0009044	545.2544024963477	48.458	0.26928	48.501	48.344	48.614	0.043324					15	9	3	0	0	0	0.39956	1	11098	11098		19.439	1.2926	1	107050			57794	3276	33107	33108	70795	70795					-0.043976174768204146
YAYALNVVF	9	Unmodified	_YAYALNVVF_					0	0	0			REV__ENSG00000198873|ENST00000392870|GRK5	REV__ENSG00000198873|ENST00000392870|GRK5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2791748046875	2	530.279118	1058.54368	0.57349	0.00030411	-0.69653	-0.00036936	-0.12304	-6.5245E-05	530.2789624120476	89.761	1.066	89.761	89.348	90.414	0					183	82	3	0	0	0	0.23775	1	23785	23785		18.135	1.1927	1	172300	+		57795	18879	33108	33109	70796	70796					0.01675242074338712
YAYDGKDYL	9	Unmodified	_YAYDGKDYL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.2534790039062	2	554.253297	1106.49204	0.44304	0.00024555	-0.17699	-9.81E-05	0.26604	0.00014745	554.253177448461	45.119	1.1153	45.119	44.802	45.917	0					74	40	2	0	0	0	0.00010125	2	10057	10057;10101		140.63	0	1	6370600			57796	8246	33109	33110	70797;70798	70797					-0.05694546410222756
YAYDGKDYL	9	Unmodified	_YAYDGKDYL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.2536010742188	2	554.253297	1106.49204	0.45979	0.00025484	0.025953	1.4384E-05	0.48575	0.00026923	554.2532974397726	44.728	1.3663	44.797	44.513	45.88	0.068569					81	48	2	0	0	0	0.00010125	1	9938	9938		140.63	0	1	7196300			57797	8246	33109	33110	70799	70799					-0.05694546410222756
YAYDGKDYL	9	Unmodified	_YAYDGKDYL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2535400390625	2	554.253297	1106.49204	0.45883	0.00025431	-0.027244	-1.51E-05	0.43158	0.00023921	554.2532530157513	44.764	1.2389	44.839	44.418	45.657	0.075047					87	45	2	0	0	0	0.00051734	2	9937	9937;9985		128.93	0	1	5975400			57798	8246	33109	33110	70800;70801	70800					-0.05694546410222756
YAYLFGQIF	9	Unmodified	_YAYLFGQIF_					0	0	0			REV__nc|ENSG00000136051|Q2M389-2|WASHC4	REV__nc|ENSG00000136051|Q2M389-2|WASHC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.81591796875	2	561.286943	1120.55933	0.41205	0.00023128	-4.0888	-0.002295	-3.6768	-0.0020637	561.7866502915795	58.077	0.13412	58.06	57.953	58.087	-0.0172					5	4	2	0	0	0	0.24739	1	14052	14052		13.508	0.97634	1	100250	+		57799	15785	33110	33111	70802	70802					0.003875285913636617
YAYNTFQV	8	Unmodified	_YAYNTFQV_					0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.5932922363281	2	503.23745	1004.46035	0.24437	0.00012297	1.1197	0.00056349	1.3641	0.00068647	503.2378942363405	59.271	0.62502	59.271	58.996	59.621	0					55	21	3	0	0	0	0.31617	1	14354	14354		20.454	6.9457	1	968350			57800	6717	33111	33112	70803	70803					-0.04170494373522615
YAYRHPLI	8	Unmodified	_YAYRHPLI_					0	0	0		nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7850341796875	2	516.784902	1031.55525	-0.62139	-0.00032112	1.0802	0.00055821	0.45876	0.00023708	516.7852220685661	34.576	0.53162	34.576	34.336	34.868	0					39	18	3	0	0	0	0.042326	1	6820	6820		81.864	31.931	1	387240			57801	4824	33112	33113	70804	70804					0.040734838883281554
YAYRHPLI	8	Unmodified	_YAYRHPLI_					0	0	0		nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.7850952148438	2	516.784902	1031.55525	-0.71865	-0.00037139	0.97621	0.00050449	0.25756	0.0001331	516.7852317975031	34.407	0.69115	34.482	34.212	34.904	0.075306					51	24	3	0	0	0	0.058048	1	6779	6779		74.396	7.361	1	381990			57802	4824	33112	33113	70805	70805					0.040734838883281554
YAYRHPLI	8	Unmodified	_YAYRHPLI_					0	0	0		nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7849731445312	2	516.784902	1031.55525	-0.17353	-8.9679E-05	0.27212	0.00014063	0.098592	5.0951E-05	516.7848853750118	34.359	0.67447	34.428	34.184	34.858	0.069275					52	23	3	0	0	0	0.042326	1	6754	6754		81.864	31.931	1	388380			57803	4824	33112	33113	70806	70806					0.040734838883281554
YAYRRIFQK	9	Unmodified	_YAYRRIFQK_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.5198974609375	3	415.568135	1243.68258	0.062918	2.6147E-05	0.28848	0.00011988	0.35139	0.00014603	415.56800646241265	29.215	0.60976	29.229	28.984	29.594	0.013474					51	21	3	0	0	0	0.2524	1	5182	5182		7.609	0	1	211820			57804	5309	33113	33114	70807	70807					0.07048204762486421
YAYSLKNQI	9	Unmodified	_YAYSLKNQI_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.29345703125	2	550.292756	1098.57096	0.45206	0.00024877	0.63342	0.00034857	1.0855	0.00059733	550.2931127567804	43.835	0.39181	43.919	43.684	44.075	0.083996					29	14	3	0	0	0	0.10058	1	9655	9655		45.7	5.7499	1	493250			57805	623	33114	33115	70808	70808					0.025617256147143053
YAYSLKNQI	9	Unmodified	_YAYSLKNQI_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	550.292756	1098.57096	0.36044	0.00019835	1.1021	0.00060648	1.4626	0.00080483	550.2931986964098	44.156	0.3708	44.156	43.959	44.33	0	0.17756	0.00025275	NaN	45.7	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453200			57806	623	33114	33115							0.025617256147143053
YAYSLKNQI	9	Unmodified	_YAYSLKNQI_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	550.292756	1098.57096	0.46015	0.00025322	0.91182	0.00050177	1.372	0.00075499	550.2931510621721	43.783	0.39365	43.86	43.654	44.048	0.077515	-0.11829	4.3325E-05	NaN	45.7	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	498730			57807	623	33114	33115							0.025617256147143053
YCCLILGIFL	10	Unmodified	_YCCLILGIFL_					0	0	0		ENST00000370689.6_1_1:84703766-84703892:+|nuORF	ENST00000370689.6_1_1:84703766-84703892:+|nuORF	ENST00000370689.6_1_1:84703766-84703892:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.7711181640625	2	579.308506	1156.60246	0.27043	0.00015666	0.7137	0.00041345	0.98412	0.00057011	579.3088007288195	82.058	2.2929	82.127	81.482	83.775	0.068993					161	93	3	0	0	0	0.3198	1	21873	21873		1.8442	0	1	414180			57808	9804	33115	33116	70809	70809					0.030422590527905413
YCCLILGIFL	10	Unmodified	_YCCLILGIFL_					0	0	0		ENST00000370689.6_1_1:84703766-84703892:+|nuORF	ENST00000370689.6_1_1:84703766-84703892:+|nuORF	ENST00000370689.6_1_1:84703766-84703892:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	579.308506	1156.60246	0.3637	0.00021069	0.4866	0.00028189	0.8503	0.00049259	579.3086568385329	82.228	1.7801	82.228	81.675	83.455	0	0.043421	-0.00020667	NaN	1.8442	108	67	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292200			57809	9804	33115	33116							0.030422590527905413
YCCLILGIFL	10	Unmodified	_YCCLILGIFL_					0	0	0		ENST00000370689.6_1_1:84703766-84703892:+|nuORF	ENST00000370689.6_1_1:84703766-84703892:+|nuORF	ENST00000370689.6_1_1:84703766-84703892:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	579.308506	1156.60246	0.37276	0.00021594	0.72193	0.00041822	1.0947	0.00063416	579.3088192493316	82.222	1.8324	82.198	81.615	83.448	-0.02404	0.013972	6.5982E-05	NaN	1.8442	105	72	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	404150			57810	9804	33115	33116							0.030422590527905413
YCDNSRYN	8	Unmodified	_YCDNSRYN_					0	0	0		nc|ENSG00000089250|P29475-3|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1	nc|ENSG00000089250|P29475-3|NOS1	nc|ENSG00000089250|P29475-3|NOS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7794799804688	2	517.703448	1033.39234	0.50624	0.00026208	0.13833	7.1614E-05	0.64457	0.00033369	517.7034085571314	75.078	0.68762	75.078	74.847	75.534	0					55	24	3	0	0	0	0.34353	1	19248	19248		4.756	4.756	1	635940			57811	1356	33116	33117	70810	70810					-0.12301687295826014
YCIGCDMTF	9	Unmodified	_YCIGCDMTF_					0	0	0			REV__ENSG00000115392|ENST00000233741|FANCL	REV__ENSG00000115392|ENST00000233741|FANCL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.6986694335938	2	526.697931	1051.38131	0.60938	0.00032096	0.78167	0.0004117	1.3911	0.00073266	526.6983110153016	64.746	0.67904	64.746	64.539	65.218	0					68	24	5	0	0	0	0.31038	1	16110	16110		7.2892	2.5332	1	749370	+		57812	14876	33117	33118	70811	70811					-0.14232548986001348
YCIGCDMTF	9	Unmodified	_YCIGCDMTF_					0	0	0			REV__ENSG00000115392|ENST00000233741|FANCL	REV__ENSG00000115392|ENST00000233741|FANCL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.6989135742188	2	526.697931	1051.38131	0.59513	0.00031345	0.85785	0.00045183	1.453	0.00076528	526.6983090362755	64.661	0.58994	64.754	64.5	65.09	0.09288					58	21	4	0	0	0	0.33018	1	16069	16069		4.3292	1.44	1	637600	+		57813	14876	33117	33118	70812	70812					-0.14232548986001348
YCIGCDMTF	9	Unmodified	_YCIGCDMTF_					0	0	0			REV__ENSG00000115392|ENST00000233741|FANCL	REV__ENSG00000115392|ENST00000233741|FANCL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8019409179688	2	526.697931	1051.38131	0.59513	0.00031345	0.85785	0.00045183	1.453	0.00076528	526.6983090362755	64.661	0.58994	64.754	64.5	65.09	0.09288					58	21	4	0	0	0	0.25622	1	16077	16077		7.2892	0.93513	1	637600	+		57814	14876	33117	33118	70813	70813					-0.14232548986001348
YCLLFILF	8	Unmodified	_YCLLFILF_					0	0	0			REV__ENST00000533521.5_1_11:61719272-61722837:+|nuORF	REV__ENST00000533521.5_1_11:61719272-61722837:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8186645507812	2	516.285357	1030.55616	0.33379	0.00017233	0.13126	6.7766E-05	0.46505	0.0002401	516.2849905109157	42.96	0.24421	42.96	42.842	43.087	0					12	8	2	0	0	0	0.33618	1	9422	9422		17.087	5.9721	1	195980	+		57815	17428	33118	33119	70814	70814					0.04210562213006597
YCLLLALLL	9	Unmodified	_YCLLLALLL_					0	0	0		ENSG00000141456|ENST00000572293|PELP1;ENST00000573523.5_1_17:4574736-4578861:-|nuORF	ENSG00000141456|ENST00000572293|PELP1	ENSG00000141456|ENST00000572293|PELP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7813110351562	2	517.819564	1033.62458	0.45542	0.00023583	-0.39501	-0.00020455	0.06041	3.1281E-05	517.8192265856181	82.96	1.1742	82.94	82.569	83.743	-0.020576					133	47	5	0	0	0	0.26117	1	21792	21792		2.3027	0	1	924110			57816	4382	33119	33120	70815	70815					0.10910806792867334
YCLRRRRR	8	Unmodified	_YCLRRRRR_					0	0	0		ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.7650146484375	2	589.843625	1177.6727	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.76	1	118.76	118.26	119.26	0								0	0	0	0.38004	1	30667	30667		0.69038	0.088878	1				57817	8450	33120	33121	70816	70816					0.09096738276139149
YCQAYYTMQA	10	Unmodified	_YCQAYYTMQA_					0	0	0			REV__SH3GLB1|p.E232V|1|0.24|ENSG00000097033|chr1:86735113-86735113|A/T|missense_variant	REV__SH3GLB1|p.E232V|1|0.24|ENSG00000097033|chr1:86735113-86735113|A/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.8380432128906	3	414.503703	1240.48928	0.31888	0.00013218	-0.5266	-0.00021828	-0.20771	-8.6098E-05	414.5036097800719	43.771	1.446	43.849	43.515	44.961	0.077518					147	53	5	0	0	0	0.37133	1	9606	9606		7.9454	3.8288	1	7459500	+		57818	14120	33121	33122	70817	70817					-0.1213446113106329
YCQAYYTMQA	10	Unmodified	_YCQAYYTMQA_					0	0	0			REV__SH3GLB1|p.E232V|1|0.24|ENSG00000097033|chr1:86735113-86735113|A/T|missense_variant	REV__SH3GLB1|p.E232V|1|0.24|ENSG00000097033|chr1:86735113-86735113|A/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.8380432128906	3	414.503703	1240.48928	0.31888	0.00013218	-0.5266	-0.00021828	-0.20771	-8.6098E-05	414.5036097800719	43.771	1.446	43.849	43.515	44.961	0.077518					147	53	5	0	0	0	0.31745	1	9606	9606		7.9454	0.90831	1	7459500	+		57819	14120	33121	33122	70818	70818					-0.1213446113106329
YCQAYYTMQA	10	Unmodified	_YCQAYYTMQA_					0	0	0			REV__SH3GLB1|p.E232V|1|0.24|ENSG00000097033|chr1:86735113-86735113|A/T|missense_variant	REV__SH3GLB1|p.E232V|1|0.24|ENSG00000097033|chr1:86735113-86735113|A/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.50372314453125	3	414.503703	1240.48928	0.26752	0.00011089	-0.54957	-0.0002278	-0.28205	-0.00011691	414.50360876681174	43.792	1.671	43.876	43.41	45.081	0.083992					152	61	5	0	0	0	0.34795	1	9658	9658		11.518	1.2026	1	8011200	+		57820	14120	33121	33122	70819	70819					-0.1213446113106329
YCQAYYTMQA	10	Unmodified	_YCQAYYTMQA_					0	0	0			REV__SH3GLB1|p.E232V|1|0.24|ENSG00000097033|chr1:86735113-86735113|A/T|missense_variant	REV__SH3GLB1|p.E232V|1|0.24|ENSG00000097033|chr1:86735113-86735113|A/T|missense_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	414.503703	1240.48928	-0.0055048	-2.2818E-06	-0.31454	-0.00013038	-0.32004	-0.00013266	414.50369153625746	44.227	1.3283	44.227	43.793	45.121	0	0.24308	0.00016693	NaN	11.518	134	48	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6755600	+		57821	14120	33121	33122							-0.1213446113106329
YCQLETIF	8	Carbamidomethyl (C)	_YC(Carbamidomethyl (C))QLETIF_	YC(1)QLETIF		YC(51)QLETIF		0	1	0		ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.2526245117188	2	537.252243	1072.48993	0.45902	0.00024661	0.66801	0.00035889	1.127	0.0006055	537.2524288068947	81.166	0.8535	81.166	80.888	81.741	0					88	39	3	0	0	0	0.24743	1	21142	21142		50.855	12.704	1	493730			57822	6826	33122	33123	70820	70820	7				-0.043412984196947946
YCQLETIF	8	Carbamidomethyl (C)	_YC(Carbamidomethyl (C))QLETIF_	YC(1)QLETIF		YC(42)QLETIF		0	1	0		ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	ENSG00000174898|ENST00000381624|CATSPERD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2523193359375	2	537.252243	1072.48993	0.4973	0.00026718	0.53296	0.00028633	1.0303	0.00055351	537.2524434249221	81.245	0.71658	81.221	80.941	81.658	-0.024048					72	31	3	0	0	0	0.20518	1	21099	21099		42.095	6.0504	1	643540			57823	6826	33122	33123	70821	70821	7				-0.043412984196947946
YCQTFCGAFSI	11	Unmodified	_YCQTFCGAFSI_					0	0	0			REV__ENSG00000255223|ENST00000528616|OR5M11	REV__ENSG00000255223|ENST00000528616|OR5M11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.261962890625	2	620.262284	1238.51002	0.1686	0.00010458	-0.64577	-0.00040055	-0.47717	-0.00029597	620.2618964015198	38.01	0.7389	38.101	37.772	38.511	0.090881					58	26	3	0	0	0	0.42762	1	7919	7919		7.609	0.88579	1	528230	+		57824	19241	33123	33124	70822	70822					-0.09969870751388044
YCRLTVPG	8	Unmodified	_YCRLTVPG_					0	0	0			REV__ENST00000354451.6_1_22:25853295-25905237:+|nuORF	REV__ENST00000354451.6_1_22:25853295-25905237:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.900634765625	2	454.736563	907.458573	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.119	1	12.119	11.619	12.619	0								0	0	0	0.37724	1	31	31		2.3027	0.82083	1		+		57825	20172	33124	33125	70823	70823					0.0011417333687404607
YCRLTVPG	8	Unmodified	_YCRLTVPG_					0	0	0			REV__ENST00000354451.6_1_22:25853295-25905237:+|nuORF	REV__ENST00000354451.6_1_22:25853295-25905237:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.9006042480469	2	454.736563	907.458573	-0.29074	-0.00013221	-1.9619	-0.00089215	-2.2526	-0.0010244	454.73780417717654	12.12	0.16621	12.052	11.974	12.14	-0.06806					13	8	2	0	0	0	0.46022	1	36	36		2.3027	0	1	33227	+		57826	20172	33124	33125	70824	70824					0.0011417333687404607
YCSKVQTGIT	10	Unmodified	_YCSKVQTGIT_					0	0	0		nc|ENSG00000144559|Q96BW9|TAMM41	nc|ENSG00000144559|Q96BW9|TAMM41	nc|ENSG00000144559|Q96BW9|TAMM41	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2785034179688	2	550.276249	1098.53795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.648	1	13.581	13.081	14.081	-0.067496								0	0	0	0.37443	1	487	487		4.5289	0	1				57827	12738	33125	33126	70825	70825					-0.007382244996506415
YCSPSHWT	8	Unmodified	_YCSPSHWT_					0	0	0			REV__ENSG00000011028|ENST00000303375|MRC2	REV__ENSG00000011028|ENST00000303375|MRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.6996154785156	2	490.700177	979.385802	0.10314	5.061E-05	-1.314	-0.00064476	-1.2108	-0.00059415	490.69961228705387	15.608	0.56754	15.608	15.413	15.981	0					40	19	3	0	0	0	0.45169	1	1090	1090		5.2307	5.2307	1	173270	+		57828	13423	33126	33127	70826	70826					-0.10471580456544416
YCSPSHWT	8	Unmodified	_YCSPSHWT_					0	0	0			REV__ENSG00000011028|ENST00000303375|MRC2	REV__ENSG00000011028|ENST00000303375|MRC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7661437988281	2	490.700177	979.385802	0.10314	5.061E-05	-1.314	-0.00064476	-1.2108	-0.00059415	490.69961228705387	15.608	0.56754	15.608	15.413	15.981	0					40	19	3	0	0	0	0.34337	1	1081	1081		5.2307	5.2307	1	173270	+		57829	13423	33126	33127	70827	70827					-0.10471580456544416
YCSPSHWT	8	Unmodified	_YCSPSHWT_					0	0	0			REV__ENSG00000011028|ENST00000303375|MRC2	REV__ENSG00000011028|ENST00000303375|MRC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.69976806640625	2	490.700177	979.385802	0.1266	6.2124E-05	-1.2609	-0.00061872	-1.1343	-0.00055659	490.6996658261653	15.703	0.64496	15.593	15.38	16.025	-0.10982					44	21	3	0	0	0	0.45169	1	1131	1131		5.2307	5.2307	1	160850	+		57830	13423	33126	33127	70828	70828					-0.10471580456544416
YCSPSHWT	8	Unmodified	_YCSPSHWT_					0	0	0			REV__ENSG00000011028|ENST00000303375|MRC2	REV__ENSG00000011028|ENST00000303375|MRC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7663879394531	2	490.700177	979.385802	0.1266	6.2124E-05	-1.2609	-0.00061872	-1.1343	-0.00055659	490.6996658261653	15.703	0.64496	15.593	15.38	16.025	-0.10982					44	21	3	0	0	0	0.34337	1	1110	1110		5.2307	5.2307	1	160850	+		57831	13423	33126	33127	70829	70829					-0.10471580456544416
YCSPSHWT	8	Unmodified	_YCSPSHWT_					0	0	0			REV__ENSG00000011028|ENST00000303375|MRC2	REV__ENSG00000011028|ENST00000303375|MRC2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	490.700177	979.385802	0.10527	5.1658E-05	-0.95526	-0.00046874	-0.84998	-0.00041709	490.6996829341099	15.645	0.55049	15.58	15.391	15.942	-0.064414	-0.013508	0.00013234	NaN	5.2307	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178960	+		57832	13423	33126	33127							-0.10471580456544416
YCTLIDSSSSF	11	Unmodified	_YCTLIDSSSSF_					0	0	0		nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	nc|ENSG00000107263|Q13905-2|RAPGEF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.7909545898438	2	611.768454	1221.52235	0.36579	0.00022378	-1.6073	-0.0009833	-1.2415	-0.00075952	612.2687726813078	76.821	0.72733	76.821	76.501	77.228	0					44	26	2	0	0	0	0.33119	1	19762	19762		5.7319	2.1354	1	247490			57833	2119	33127	33128	70830	70830					-0.07954555807373254
YDADRQCQL	9	Unmodified	_YDADRQCQL_					0	0	0		ENSG00000158859|ENST00000367996|ADAMTS4;nc|ENSG00000158859|O75173-2|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.81396484375	2	556.24548	1110.47641	0.086621	4.8183E-05	-2.0028	-0.001114	-1.9162	-0.0010659	556.7460324475176	61.283	0.37388	61.274	61.077	61.451	-0.0094528					16	13	2	0	0	0	0.2451	1	14976	14976		15.847	0	1	210970			57834	5376	33128	33129	70831	70831					-0.0744115619893364
YDANGLIH	8	Unmodified	_YDANGLIH_					0	0	0			REV__nc|ENSG00000151067|Q13936-26|CACNA1C	REV__nc|ENSG00000151067|Q13936-26|CACNA1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7218933105469	2	451.721967	901.429381	0.35342	0.00015965	-2.331	-0.001053	-1.9776	-0.00089332	451.7208273090942	58.689	0.77839	58.675	58.47	59.248	-0.014267					43	27	2	0	0	0	0.41758	1	14265	14265		16.942	0	1	370710	+		57835	23030	33129	33130	70832	70832					-0.02527647687747958
YDDASIKNCH	10	Unmodified	_YDDASIKNCH_					0	0	0			REV__UBOX5|p.G23D|1|0.19|ENSG00000185019|chr20:3122571-3122571|C/T|missense_variant	REV__UBOX5|p.G23D|1|0.19|ENSG00000185019|chr20:3122571-3122571|C/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.8018188476562	2	583.250763	1164.48697	0.16821	9.8107E-05	-2.6553	-0.0015487	-2.4871	-0.0014506	583.2491856710318	33.162	0.5316	33.162	32.895	33.426	0					28	18	2	0	0	0	0.31794	1	6447	6447		4.897	0	1	162660	+		57836	23349	33130	33131	70833	70833					-0.0886917354448542
YDDSEDGGHTL	11	Unmodified	_YDDSEDGGHTL_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.2470397949219	3	403.494918	1207.46293	-0.2859	-0.00011536	0.424	0.00017108	0.1381	5.5725E-05	403.4952723960892	33.394	0.58406	33.461	33.215	33.799	0.066704					40	20	3	0	0	0	0.33238	1	6488	6488		0.45452	0	1	276840			57837	3583	33131	33132	70834	70834					-0.13250735497172172
YDDYDRYR	8	Unmodified	_YDDYDRYR_					0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000188529|ENST00000492112|SRSF10;ENST00000495785.1_1_1:24298338-24304405:-|nuORF;ENST00000473754.1_1_1:24298061-24301527:-|nuORF;ENST00000473858.5_1_1:24294155-24306819:-|nuORF;ENST00000338597.9_1_1:24297634-24304405:-|nuORF;ENST00000485841.5_1_1:24297634-24301602:-|nuORF	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.8014526367188	2	583.249077	1164.4836	0.25512	0.0001488	-0.0080419	-4.6904E-06	0.24708	0.00014411	583.2492105541838	33.031	0.32742	33.085	32.931	33.258	0.054371					19	11	2	0	0	0	0.34313	1	6366	6366		6.7232	0.99131	1	166380			57838	7753	33132	33133	70835	70835					-0.09206100326878186
YDEFFEEFYRN	11	Unmodified	_YDEFFEEFYRN_					0	0	0		ENST00000393668.3_1_11:71991299-71991795:+|nuORF	ENST00000393668.3_1_11:71991299-71991795:+|nuORF	ENST00000393668.3_1_11:71991299-71991795:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.820068359375	3	520.221018	1557.64122	0.29553	0.00015374	0.024418	1.2703E-05	0.31995	0.00016644	520.2210669280058	26.761	0.70917	26.732	26.499	27.208	-0.028791					43	24	2	0	0	0	0.33352	1	4412	4412		0	0	1	87894			57839	10057	33133	33134	70836	70836					-0.11529065578133668
YDEFFEEFYRN	11	Unmodified	_YDEFFEEFYRN_					0	0	0		ENST00000393668.3_1_11:71991299-71991795:+|nuORF	ENST00000393668.3_1_11:71991299-71991795:+|nuORF	ENST00000393668.3_1_11:71991299-71991795:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	520.221018	1557.64122	0.34419	0.00017905	-0.43897	-0.00022836	-0.094783	-4.9308E-05	520.2209951545381	26.894	0.79568	26.894	26.499	27.294	0	0.040378	-0.00027829	NaN	0	58	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78816			57840	10057	33133	33134							-0.11529065578133668
YDEFFEEFYRN	11	Unmodified	_YDEFFEEFYRN_					0	0	0		ENST00000393668.3_1_11:71991299-71991795:+|nuORF	ENST00000393668.3_1_11:71991299-71991795:+|nuORF	ENST00000393668.3_1_11:71991299-71991795:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	520.221018	1557.64122	0.4475	0.0002328	-0.47519	-0.00024721	-0.0277	-1.441E-05	520.2208745666002	26.946	0.80554	26.935	26.513	27.318	-0.011562	0.08126	-0.00033482	NaN	0	62	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132590			57841	10057	33133	33134							-0.11529065578133668
YDETEEEYD	9	Unmodified	_YDETEEEYD_					0	0	0			REV__ENSG00000155085|ENST00000424296|AK9	REV__ENSG00000155085|ENST00000424296|AK9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.71142578125	2	596.711856	1191.40916	0.39272	0.00023434	-0.62163	-0.00037093	-0.22891	-0.00013659	596.7113172487108	92.798	0.51982	92.798	92.548	93.068	0					104	41	4	0	0	0	0.35512	1	24675	24675		0.6015	0	1	256080	+		57842	16689	33134	33135	70837	70837					-0.17888952719567897
YDETEEEYD	9	Unmodified	_YDETEEEYD_					0	0	0			REV__ENSG00000155085|ENST00000424296|AK9	REV__ENSG00000155085|ENST00000424296|AK9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.7115478515625	2	596.711856	1191.40916	0.46706	0.0002787	-0.54904	-0.00032762	-0.081981	-4.8919E-05	596.7113550269409	92.638	0.62827	92.728	92.508	93.136	0.089195					133	49	4	0	0	0	0.34536	2	24617	24617;24659		2.0598	0	1	372380	+		57843	16689	33134	33135	70838;70839	70838					-0.17888952719567897
YDETEEEYD	9	Unmodified	_YDETEEEYD_					0	0	0			REV__ENSG00000155085|ENST00000424296|AK9	REV__ENSG00000155085|ENST00000424296|AK9	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	596.711856	1191.40916	0.39272	0.00023434	-0.62163	-0.00037093	-0.22891	-0.00013659	596.7113172487108	92.798	0.51982	92.798	92.548	93.068	0	0.026059	1.3111E-05	NaN	2.0598	104	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256080	+		57844	16689	33134	33135							-0.17888952719567897
YDGAEKFYF	9	Unmodified	_YDGAEKFYF_					0	0	0			REV__nc|ENSG00000136114|Q9NS62-3|THSD1	REV__nc|ENSG00000136114|Q9NS62-3|THSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.8291015625	2	570.25584	1138.49713	0.51088	0.00029133	-0.25585	-0.0001459	0.25504	0.00014544	570.2556422988021	72.096	0.87183	72.153	71.868	72.74	0.056572					67	31	3	0	0	0	0.1939	1	18396	18396		30.637	3.0077	1	919740	+		57845	15791	33135	33136	70840	70840					-0.06658242547609916
YDGAEKFYF	9	Unmodified	_YDGAEKFYF_					0	0	0			REV__nc|ENSG00000136114|Q9NS62-3|THSD1	REV__nc|ENSG00000136114|Q9NS62-3|THSD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.8291015625	2	570.25584	1138.49713	0.34782	0.00019835	-0.098998	-5.6454E-05	0.24882	0.00014189	570.2557500927139	72.175	0.95034	72.147	71.925	72.875	-0.027275					71	33	3	0	0	0	0.12743	1	18418	18418		46.021	4.1813	1	878930	+		57846	15791	33135	33136	70841	70841					-0.06658242547609916
YDGFCPRLS	9	Unmodified	_YDGFCPRLS_					0	0	0			REV__ENSG00000121653|ENST00000241014|MAPK8IP1	REV__ENSG00000121653|ENST00000241014|MAPK8IP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.81396484375	2	529.242209	1056.46987	0.59915	0.00031709	-0.39043	-0.00020663	0.20871	0.00011046	529.241981654369	77.243	0.47711	77.299	77.12	77.597	0.055412					21	16	2	0	0	0	0.25526	1	19986	19986		7.9102	0	1	132990	+		57847	15127	33136	33137	70842	70842					-0.05611049359640674
YDGFFSPKSR	10	Unmodified	_YDGFFSPKSR_					0	0	0		nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000138767|ENST00000504123|CNOT6L	nc|ENSG00000138767|Q96LI5-2|CNOT6L	nc|ENSG00000138767|Q96LI5-2|CNOT6L	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.29541015625	2	602.293288	1202.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.17	1	12.074	11.574	12.574	-0.096607								0	0	0	0.38189	1	49	49		1.1933	0.23107	1				57848	4191	33137	33138	70843	70843					-0.021160600163966592
YDGFKAQVAY	10	Unmodified	_YDGFKAQVAY_					0	0	0			REV__ENSG00000092820|ENST00000367075|EZR	REV__ENSG00000092820|ENST00000367075|EZR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.8452758789062	2	581.282389	1160.55022	0.36329	0.00021118	-0.87953	-0.00051126	-0.51624	-0.00030008	581.2818351509012	88.196	0.10745	88.286	88.213	88.321	0.089203					5	4	2	0	0	0	0.318	1	23284	23284		3.9444	0	1	47204	+		57849	14085	33138	33139	70844	70844					-0.023628647649502454
YDGLGSASDVR	11	Unmodified	_YDGLGSASDVR_					0	0	0			REV__ENSG00000110076|ENST00000265459|NRXN2	REV__ENSG00000110076|ENST00000265459|NRXN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.6893920898438	2	570.27001	1138.52547	0.040467	2.3077E-05	-2.6241	-0.0014965	-2.5837	-0.0014734	570.2686049835578	19.313	0.4519	19.313	19.095	19.547	0					19	15	2	0	0	0	0.3327	1	2133	2133		2.7352	0.67545	1	31279	+		57850	14661	33139	33140	70845	70845					-0.03825544638334577
YDGRTVQFP	9	Unmodified	_YDGRTVQFP_					0	0	0			REV__nc|ENSG00000254986|Q9NY33-4|DPP3	REV__nc|ENSG00000254986|Q9NY33-4|DPP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7515258789062	2	541.766906	1081.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.31	1	60.405	59.905	60.905	0.095093								0	0	0	0.21971	1	14735	14735		16.149	0.30192	1		+		57851	19238	33140	33141	70846	70846					-0.018240180791963212
YDHDSAEYLL	10	Unmodified	_YDHDSAEYLL_					0	0	0		ENSG00000142408|ENST00000270458|CACNG8	ENSG00000142408|ENST00000270458|CACNG8	ENSG00000142408|ENST00000270458|CACNG8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5606994628906	3	409.183904	1224.52988	0.41773	0.00017093	-0.56322	-0.00023046	-0.14549	-5.9533E-05	409.18345374765954	60.586	0.3972	60.683	60.528	60.925	0.096985					19	13	2	0	0	0	0.31942	1	14806	14806		6.1918	0.89496	1	155240			57852	4440	33141	33142	70847	70847					-0.07340080215408307
YDHRHWNRRK	10	Unmodified	_YDHRHWNRRK_					0	0	0			REV__ENSG00000006459|ENST00000397560|KDM7A	REV__ENSG00000006459|ENST00000397560|KDM7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.26483154296875	3	489.920342	1466.7392	0.31731	0.00015546	0.55265	0.00027076	0.86996	0.00042621	489.92045057017685	91.962	0.82227	92.052	91.556	92.378	0.090675					99	55	3	0	0	0	0.41469	1	24415	24415		0.77653	0.77653	1	309560	+		57853	13360	33142	33143	70848	70848					0.024496453717347322
YDHRHWNRRK	10	Unmodified	_YDHRHWNRRK_					0	0	0			REV__ENSG00000006459|ENST00000397560|KDM7A	REV__ENSG00000006459|ENST00000397560|KDM7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.26483154296875	3	489.920342	1466.7392	0.31731	0.00015546	0.55265	0.00027076	0.86996	0.00042621	489.92045057017685	91.962	0.82227	92.052	91.556	92.378	0.090675					99	55	3	0	0	0	0.32162	1	24415	24415		0.77653	0.77653	1	309560	+		57854	13360	33142	33143	70849	70849					0.024496453717347322
YDHRHWNRRK	10	Unmodified	_YDHRHWNRRK_					0	0	0			REV__ENSG00000006459|ENST00000397560|KDM7A	REV__ENSG00000006459|ENST00000397560|KDM7A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	489.920342	1466.7392	0.28153	0.00013793	0.60116	0.00029452	0.88269	0.00043245	489.92049668193255	92.075	0.70105	92.075	91.534	92.235	0	0.011175	4.9985E-05	NaN	0.77653	61	47	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150990	+		57855	13360	33142	33143							0.024496453717347322
YDIITHLT	8	Unmodified	_YDIITHLT_					0	0	0			REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2494812011719	2	488.260925	974.507297	0.74364	0.00036309	-1.484	-0.00072456	-0.74033	-0.00036147	488.25999675904404	78.059	0.5393	78.059	77.85	78.389	0					25	19	2	0	0	0	0.42446	1	20238	20238		14.582	6.6715	1	95427	+		57856	18518	33143	33144	70850	70850					0.01902365177613774
YDIITHLT	8	Unmodified	_YDIITHLT_					0	0	0			REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.80029296875	2	488.260925	974.507297	0.44558	0.00021756	-1.9647	-0.0009593	-1.5191	-0.00074174	488.2596575730108	87.72	1.0091	87.72	87.194	88.204	0					62	47	2	0	0	0	0.34046	1	23199	23199		9.3474	0.75416	1	95766	+		57857	18518	33143	33144	70851	70851					0.01902365177613774
YDIITHLT	8	Unmodified	_YDIITHLT_					0	0	0			REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	REV__nc|ENSG00000187742|Q96T21-2|SECISBP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.24969482421875	2	488.260925	974.507297	0.35619	0.00017391	-1.5062	-0.00073543	-1.15	-0.00056152	488.2597357907863	87.581	0.50952	87.668	87.305	87.814	0.08709					35	25	2	0	0	0	0.45169	1	23074	23074		5.2307	0	1	73074	+		57858	18518	33143	33144	70852	70852					0.01902365177613774
YDILFTAGLL	10	Unmodified	_YDILFTAGLL_					0	0	0			REV__ENST00000571541.5_1_17:7293706-7296729:-|nuORF	REV__ENST00000571541.5_1_17:7293706-7296729:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.763427734375	2	563.313158	1124.61176	0.47444	0.00026726	2.0976	0.0011816	2.5721	0.0014489	563.316448293464	67.551	0.081627	67.629	67.576	67.657	0.078041					4	2	2	0	0	0	0.31629	1	16956	16956		10.074	2.7847	1	29160	+		57859	18525	33144	33145	70853	70853					0.05444066934342118
YDILFTAGLL	10	Unmodified	_YDILFTAGLL_					0	0	0			REV__ENST00000571541.5_1_17:7293706-7296729:-|nuORF	REV__ENST00000571541.5_1_17:7293706-7296729:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.313158	1124.61176	0.27506	0.00015495	8.7626	0.0049361	9.0376	0.005091	563.3183436795354	67.974	0.49334	67.974	67.757	68.25	0	0.17243	5.356E-05	NaN	10.074	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311290	+		57860	18525	33144	33145							0.05444066934342118
YDILISLFP	9	Unmodified	_YDILISLFP_					0	0	0			REV__ENST00000379565.7_1_X:20168583-20168808:-|nuORF	REV__ENST00000379565.7_1_X:20168583-20168808:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.35009765625	2	540.802426	1079.5903	0.5186	0.00028046	-0.082078	-4.4388E-05	0.43652	0.00023607	541.304617703397	60.48	0.7271	60.48	60.065	60.792	0					40	26	3	0	0	0	0.12846	1	14702	14702		44.407	14.182	1	522560	+		57861	20535	33145	33146	70854	70854					0.053686819056110835
YDIVIPVKD	9	Unmodified	_YDIVIPVKD_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.7501220703125	2	531.297507	1060.58046	0.41321	0.00021954	-3.1029	-0.0016486	-2.6897	-0.001429	531.2951534470051	34.244	0.28805	34.244	34.074	34.362	0					11	9	2	0	0	0	0.25431	1	6699	6699		9.3831	1.473	1	80353			57862	6992	33146	33147	70855	70855					0.05259493900234702
YDKHPIFK	8	Unmodified	_YDKHPIFK_					0	0	0			REV__nc|ENSG00000197771|Q9BTE3-3|MCMBP	REV__nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.3194580078125	2	524.284734	1046.55492	0.46616	0.0002444	-0.99443	-0.00052136	-0.52828	-0.00027697	524.2838788928279	43.246	0.13914	43.33	43.217	43.356	0.083996					5	4	2	0	0	0	0.32886	1	9461	9461		21.747	3.6117	1	61149	+		57863	18765	33147	33148	70856	70856					0.03350064168489553
YDKLAVSESKR	11	Unmodified	_YDKLAVSESKR_					0	0	0			REV__ENSG00000278685|ENST00000615129|IQCA1L	REV__ENSG00000278685|ENST00000615129|IQCA1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.5945739746094	3	432.569981	1294.68811	-0.46923	-0.00020297	1.9004	0.00082205	1.4312	0.00061908	432.9048163458074	24.954	0.55067	24.923	24.796	25.347	-0.031408					25	18	2	0	0	0	0.33056	1	3941	3941		8.7518	0.80638	1	32994	+		57864	19350	33148	33149	70857	70857					0.05255838763673637
YDLGIKHTF	9	Unmodified	_YDLGIKHTF_					0	0	0		ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	ENSG00000163751|ENST00000296046|CPA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7977905273438	2	547.287474	1092.5604	0.52041	0.00028481	-0.21931	-0.00012003	0.30109	0.00016479	547.2872079019633	66.396	0.57109	66.382	66.091	66.662	-0.013588					39	20	3	0	0	0	0.23784	1	16523	16523		9.3831	0	1	327200			57865	5725	33149	33150	70858	70858					0.01781742960270094
YDLRERKLAQ	10	Unmodified	_YDLRERKLAQ_					0	0	0		ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	647.35888671875	2	646.359493	1290.70443	0.033582	2.1706E-05	0.389	0.00025144	0.42258	0.00027314	646.3597270042599	103.6	0.38254	103.6	103.53	103.91	0					131	55	3	0	0	0	0.38515	1	27547	27547		6.2058	0.9089	1	5730300			57866	7562	33150	33151	70859	70859					0.07070964720423945
YDLRERKLAQ	10	Unmodified	_YDLRERKLAQ_					0	0	0		ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.361083984375	2	646.359493	1290.70443	0.17285	0.00011172	-0.39103	-0.00025274	-0.21817	-0.00014102	647.3618966779642	103.08	0.29935	103.09	102.89	103.19	0.0082703					121	41	4	0	0	0	0.38515	3	27364	27364;27386;27407		6.2058	0.9089	1	9644300			57867	7562	33150	33151	70860;70861;70862	70860					0.07070964720423945
YDLRERKLAQ	10	Unmodified	_YDLRERKLAQ_					0	0	0		ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	647.8609008789062	2	646.359493	1290.70443	0.17175	0.00011101	-0.29584	-0.00019122	-0.12409	-8.0207E-05	646.3595955395996	103.61	0.60604	103.61	103.53	104.13	0.0082626					252	83	5	0	0	0	0.38515	3	27547	27547;27576;27584		6.2058	0.9089	1	7080200			57868	7562	33150	33151	70863;70864;70865	70863					0.07070964720423945
YDLRERKLAQ	10	Unmodified	_YDLRERKLAQ_					0	0	0		ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	646.359493	1290.70443	0.31719	0.00020502	-0.72821	-0.00047068	-0.41102	-0.00026567	646.3586672682992	103.37	0.052277	103.37	103.33	103.38	-0.0011063	0.13866	-0.00029216	NaN	6.2058	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5443200			57869	7562	33150	33151							0.07070964720423945
YDNEKKWDL	9	Unmodified	_YDNEKKWDL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000550970.1_1_12:50055747-50062331:-|nuORF	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.565185546875	3	404.196144	1209.5666	-1.0326	-0.00041738	0.33791	0.00013658	-0.6947	-0.0002808	404.19636200220543	34.803	0.91565	34.88	34.474	35.39	0.077377					102	32	4	0	0	0	0.25527	1	6817	6817		8.7454	4.5559	1	975780			57870	5528	33151	33152	70866	70866					-0.029797835988347288
YDNIPILTF	9	Unmodified	_YDNIPILTF_					0	0	0		ENST00000472403.5_2_17:42766475-42767202:+|nuORF	ENST00000472403.5_2_17:42766475-42767202:+|nuORF	ENST00000472403.5_2_17:42766475-42767202:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3049926757812	2	548.289682	1094.56481	0.62526	0.00034282	-1.3311	-0.00072985	-0.70589	-0.00038703	548.2887353798735	65.925	0.50159	65.913	65.641	66.142	-0.011909					37	17	4	0	0	0	0.18803	1	16460	16460		25.399	4.9457	1	630450			57871	10893	33152	33153	70867	70867					0.02131207383195033
YDNIPILTF	9	Unmodified	_YDNIPILTF_					0	0	0		ENST00000472403.5_2_17:42766475-42767202:+|nuORF	ENST00000472403.5_2_17:42766475-42767202:+|nuORF	ENST00000472403.5_2_17:42766475-42767202:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.289682	1094.56481	0.74249	0.0004071	-2.2064	-0.0012097	-1.4639	-0.00080264	548.2886806942316	65.763	0.56874	65.852	65.628	66.197	0.088882	-0.024508	-0.00052968	NaN	25.399	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	662460			57872	10893	33152	33153							0.02131207383195033
YDPDVLYYI	9	Unmodified	_YDPDVLYYI_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1;ENST00000479449.1_1_3:49070551-49094468:-|nuORF	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8453369140625	2	580.779148	1159.54374	0.36597	0.00021255	0.38568	0.00022399	0.75165	0.00043654	580.7791278585511	88.316	0.28094	88.313	88.224	88.505	-0.0028381					14	13	2	0	0	0	0.2451	1	23308	23308		15.847	0	1	101630			57873	8053	33153	33154	70868	70868					-0.029648027163148072
YDPSHNMW	8	Unmodified	_YDPSHNMW_					0	0	0		ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7817993164062	2	525.210909	1048.40727	0.1946	0.00010221	0.84543	0.00044403	1.04	0.00054624	525.2112309308242	81.254	0.96509	81.323	81.053	82.018	0.068993					78	46	3	0	0	0	0.34337	1	21262	21262		5.2307	2.3415	1	201420			57874	2958	33154	33155	70869	70869					-0.11500195427811377
YDREKSSF	8	Unmodified	_YDREKSSF_					0	0	0			REV__ENST00000425953.5_1_2:95880296-95880386:+|nuORF	REV__ENST00000425953.5_1_2:95880296-95880386:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.8186645507812	2	516.243264	1030.47197	-0.13925	-7.1886E-05	-1.0994	-0.00056756	-1.2386	-0.00063944	516.2425385389199	65.314	0.7827	65.403	65.11	65.893	0.088882					59	28	3	0	0	0	0.31617	1	16405	16405		26.884	12.045	1	819520	+		57875	20897	33155	33156	70870	70870					-0.04204297350179331
YDREKSSF	8	Unmodified	_YDREKSSF_					0	0	0			REV__ENST00000425953.5_1_2:95880296-95880386:+|nuORF	REV__ENST00000425953.5_1_2:95880296-95880386:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	516.243264	1030.47197	0.2856	0.00014744	-1.8014	-0.00092994	-1.5158	-0.00078251	516.2421296389053	65.428	0.69455	65.428	65.1	65.795	0	0.020635	-0.00028616	NaN	26.884	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	637210	+		57876	20897	33155	33156							-0.04204297350179331
YDREKSSF	8	Unmodified	_YDREKSSF_					0	0	0			REV__ENST00000425953.5_1_2:95880296-95880386:+|nuORF	REV__ENST00000425953.5_1_2:95880296-95880386:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	516.243264	1030.47197	0.15652	8.0802E-05	-1.5652	-0.00080805	-1.4087	-0.00072725	516.2422507418007	65.403	0.67909	65.392	65.148	65.827	-0.011337	-0.016127	-4.2373E-05	NaN	26.884	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	717580	+		57877	20897	33155	33156							-0.04204297350179331
YDREPAQEL	9	Unmodified	_YDREPAQEL_					0	0	0			REV__ENST00000375664.8_2_10:28821715-28821823:+|nuORF	REV__ENST00000375664.8_2_10:28821715-28821823:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.805419921875	2	560.767103	1119.51965	0.14992	8.407E-05	0.66482	0.00037281	0.81474	0.00045688	560.7672304841802	76.495	0.24728	76.548	76.371	76.619	0.053413					11	8	2	0	0	0	0.2451	1	19660	19660		15.847	0	1	69202	+		57878	20480	33156	33157	70871	70871					-0.03532643149992509
YDRVLYRF	8	Unmodified	_YDRVLYRF_					0	0	0			REV__ENSG00000149177|ENST00000418331|PTPRJ	REV__ENSG00000149177|ENST00000418331|PTPRJ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.7681274414062	2	566.300916	1130.58728	0.21708	0.00012293	-0.12075	-6.8382E-05	0.096324	5.4548E-05	566.3007502630329	39.093	0.46843	39.186	38.974	39.442	0.09267					21	16	2	0	0	0	0.34131	1	8150	8150		12.532	3.9383	1	197620	+		57879	16452	33157	33158	70872	70872					0.027208515714619352
YDRVLYRF	8	Unmodified	_YDRVLYRF_					0	0	0			REV__ENSG00000149177|ENST00000418331|PTPRJ	REV__ENSG00000149177|ENST00000418331|PTPRJ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	566.300916	1130.58728	-0.10037	-5.6838E-05	0.093674	5.3048E-05	-0.0066933	-3.7904E-06	566.300491505667	39.257	0.60459	39.257	39.04	39.644	0	0.031786	0.00027538	NaN	12.532	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167200	+		57880	16452	33157	33158							0.027208515714619352
YDRVLYRF	8	Unmodified	_YDRVLYRF_					0	0	0			REV__ENSG00000149177|ENST00000418331|PTPRJ	REV__ENSG00000149177|ENST00000418331|PTPRJ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	566.300916	1130.58728	0.36969	0.00020936	-0.47523	-0.00026912	-0.10554	-5.9766E-05	566.3006200635834	39.134	0.435	39.234	39.017	39.452	0.099403	0.0081001	-0.00036896	NaN	12.532	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187570	+		57881	16452	33157	33158							0.027208515714619352
YDSAASNLF	9	Unmodified	_YDSAASNLF_					0	0	0			REV__ENSG00000162598|ENST00000371201|C1orf87	REV__ENSG00000162598|ENST00000371201|C1orf87	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.78741455078125	2	494.224539	986.434526	0.95802	0.00047347	0.80904	0.00039985	1.7671	0.00087332	494.22467527984935	50.487	0.82248	50.532	50.318	51.141	0.044891					59	29	3	0	0	0	0.2451	1	11675	11675		15.847	1.2655	1	575170	+		57882	16990	33158	33159	70873	70873					-0.05923388615792646
YDSSETSGKQ	10	Unmodified	_YDSSETSGKQ_					0	0	0			REV__ENSG00000171847|ENST00000538603|FAM90A1	REV__ENSG00000171847|ENST00000538603|FAM90A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.785400390625	2	551.238375	1100.4622	0.55498	0.00030592	0.24236	0.0001336	0.79733	0.00043952	551.2381852978884	67.87	0.50436	67.948	67.715	68.219	0.078041					31	17	2	0	0	0	0.30079	1	17009	17009		20.454	0	1	330240	+		57883	17670	33159	33160	70874	70874					-0.08401530146215919
YDVALWVDT	9	Unmodified	_YDVALWVDT_					0	0	0			REV__ENSG00000206579|ENST00000327381|XKR4	REV__ENSG00000206579|ENST00000327381|XKR4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2633666992188	2	541.263665	1080.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.537	1	94.62	94.12	95.12	0.082779								0	0	0	0.2362	1	25219	25219		10.824	0.75	1		+		57884	19023	33160	33161	70875	70875					-0.02425956030560883
YDVEEEEEF	9	Unmodified	_YDVEEEEEF_					0	0	0		ENSG00000101463|ENST00000376862|SYNDIG1	ENSG00000101463|ENST00000376862|SYNDIG1	ENSG00000101463|ENST00000376862|SYNDIG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.7328491210938	2	594.732591	1187.45063	0.59544	0.00035413	-0.49057	-0.00029176	0.10487	6.2369E-05	594.7324787559206	76.885	1.2165	76.885	76.53	77.747	0					153	44	6	0	0	0	0.30623	1	19822	19822		7.9102	7.9102	1	836610			57885	1704	33161	33162	70876	70876					-0.1355977196024014
YDVEEEEEF	9	Unmodified	_YDVEEEEEF_					0	0	0		ENSG00000101463|ENST00000376862|SYNDIG1	ENSG00000101463|ENST00000376862|SYNDIG1	ENSG00000101463|ENST00000376862|SYNDIG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.7325439453125	2	594.732591	1187.45063	0.69631	0.00041412	-0.43304	-0.00025754	0.26327	0.00015657	594.7324356133056	76.991	1.3321	76.96	76.537	77.869	-0.031334					150	48	5	0	0	0	0.31038	1	19865	19865		7.2892	7.2892	1	934320			57886	1704	33161	33162	70877	70877					-0.1355977196024014
YDVPRAQHF	9	Unmodified	_YDVPRAQHF_					0	0	0			REV__ENSG00000187676|ENST00000343307|B3GLCT	REV__ENSG00000187676|ENST00000343307|B3GLCT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2744750976562	2	566.780348	1131.54614	0.31617	0.0001792	0.85749	0.00048601	1.1737	0.00066521	566.7816618948237	71.673	2.6999	71.673	71.128	73.828	0					243	97	5	0	0	0	0.1669	1	18336	18336		28.487	6.7402	1	5446400	+		57887	18514	33162	33163	70878	70878					-0.014369094680205308
YDVPRAQHF	9	Unmodified	_YDVPRAQHF_					0	0	0			REV__ENSG00000187676|ENST00000343307|B3GLCT	REV__ENSG00000187676|ENST00000343307|B3GLCT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.2742919921875	2	566.780348	1131.54614	0.35419	0.00020075	1.5091	0.00085535	1.8633	0.0010561	566.7816406256766	71.722	1.9465	71.695	71.157	73.103	-0.027275					179	69	5	0	0	0	0.1669	1	18350	18350		28.487	3.813	1	5844300	+		57888	18514	33162	33163	70879	70879					-0.014369094680205308
YDWAVGYII	9	Unmodified	_YDWAVGYII_					0	0	0			REV__nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	REV__nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2769775390625	2	550.276575	1098.5386	0.42235	0.00023241	0.029997	1.6507E-05	0.45235	0.00024892	550.2766384689681	79.903	1.5464	79.903	78.776	80.322	0					96	60	3	0	0	0	0.24311	1	20790	20790		16.942	3.4344	1	284120	+		57889	18753	33163	33164	70880	70880					-0.0067306178827948315
YDWAVGYII	9	Unmodified	_YDWAVGYII_					0	0	0			REV__nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	REV__nc|ENSG00000197646|Q9BQ51-3|PDCD1LG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2776489257812	2	550.276575	1098.5386	0.46896	0.00025806	-0.11481	-6.3178E-05	0.35415	0.00019488	550.276530501598	80.026	1.25	79.997	79.153	80.403	-0.028923					86	46	3	0	0	0	0.22596	1	20811	20811		21.747	8.2388	1	309910	+		57890	18753	33163	33164	70881	70881					-0.0067306178827948315
YDWRGFVLT	9	Unmodified	_YDWRGFVLT_					0	0	0		ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.7794799804688	2	578.792924	1155.57129	0.57994	0.00033567	1.3261	0.00076755	1.9061	0.0011032	578.793683386079	65.893	0.68196	65.982	65.677	66.359	0.088882					34	24	2	0	0	0	0.24581	2	16413	16413;16458		16.942	16.942	1	308210			57891	8489	33164	33165	70882;70883	70882					-0.0002685466542970971
YDWRGFVLT	9	Unmodified	_YDWRGFVLT_					0	0	0		ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	578.792924	1155.57129	0.38629	0.00022358	1.5376	0.00088995	1.9239	0.0011135	578.7938176417764	65.928	0.58655	65.916	65.693	66.28	-0.012146	-0.040345	4.7709E-05	NaN	16.942	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328390			57892	8489	33164	33165							-0.0002685466542970971
YDYGSSHGLT	10	Unmodified	_YDYGSSHGLT_					0	0	0		nc|ENSG00000101605|P52179-2|MYOM1;ENSG00000101605|ENST00000356443|MYOM1	nc|ENSG00000101605|P52179-2|MYOM1	nc|ENSG00000101605|P52179-2|MYOM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2782592773438	2	550.238178	1098.4618	0.63374	0.00034871	1.1918	0.00065576	1.8255	0.0010045	550.2387796431235	72.259	0.51568	72.316	72.057	72.573	0.056572					28	18	2	0	0	0	0.31691	1	18341	18341		9.3831	9.3831	1	127110			57893	1711	33165	33166	70884	70884					-0.08348905075399671
YEADIVEQF	9	Unmodified	_YEADIVEQF_					0	0	0			REV__ENSG00000174898|ENST00000381624|CATSPERD	REV__ENSG00000174898|ENST00000381624|CATSPERD	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2680053710938	2	557.258579	1112.50261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.592	1	77.647	77.147	78.147	0.055412								0	0	0	0.21009	1	20026	20026		19.257	0	1		+		57894	17859	33166	33167	70885	70885					-0.049145637558240196
YEALVNAGSL	10	Unmodified	_YEALVNAGSL_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.3052368164062	2	518.769114	1035.52368	0.3823	0.00019832	0.45732	0.00023724	0.83961	0.00043556	518.7693701911518	68.27	0.6658	68.251	68.014	68.68	-0.019157					43	23	3	0	0	0	0.30586	1	17107	17107		13.906	0	1	483880	+		57895	18580	33167	33168	70886	70886					0.007334463437246086
YEALVNAGSL	10	Unmodified	_YEALVNAGSL_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	518.769114	1035.52368	0.38781	0.00020119	0.35902	0.00018625	0.74683	0.00038743	518.7692293914517	68.258	0.5184	68.258	68.048	68.566	0	-0.00033266	-5.7154E-06	NaN	13.906	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461730	+		57896	18580	33167	33168							0.007334463437246086
YEALVNAGSL	10	Unmodified	_YEALVNAGSL_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	518.769114	1035.52368	0.29435	0.0001527	0.33475	0.00017366	0.6291	0.00032636	518.7692601878276	68.195	0.44018	68.267	68.044	68.484	0.071938	0.0084951	-3.0892E-05	NaN	13.906	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	444050	+		57897	18580	33167	33168							0.007334463437246086
YEASILTH	8	Unmodified	_YEASILTH_					0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2264404296875	2	467.23745	932.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.031	1	19.031	18.531	19.531	0								0	0	0	0.37664	1	2111	2111		2.5775	0.27475	1				57898	6556	33168	33169	70887	70887					-0.008584943735286288
YEASILTH	8	Unmodified	_YEASILTH_					0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.2266540527344	2	467.23745	932.460347	NaN	NaN	NaN	NaN	NaN	NaN	NaN	19.112	1	19.056	18.556	19.556	-0.056246								0	0	0	0.37664	1	2134	2134		2.5775	0.27475	1				57899	6556	33168	33169	70888	70888					-0.008584943735286288
YECLSEESL	9	Unmodified	_YECLSEESL_					0	0	0			REV__ENST00000440462.5_1_2:85584367-85596871:+|nuORF	REV__ENST00000440462.5_1_2:85584367-85596871:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.7296752929688	2	536.728797	1071.44304	0.47714	0.00025609	0.14687	7.8831E-05	0.62401	0.00033493	536.7292941011581	58.946	1.3129	58.946	58.531	59.844	0					164	45	5	0	0	0	0.24581	1	14402	14402		16.942	0	1	7074900	+		57900	21045	33169	33170	70889	70889					-0.08982202761490043
YECLSEESL	9	Unmodified	_YECLSEESL_					0	0	0			REV__ENST00000440462.5_1_2:85584367-85596871:+|nuORF	REV__ENST00000440462.5_1_2:85584367-85596871:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.7296142578125	2	536.728797	1071.44304	0.58088	0.00031178	0.10618	5.6988E-05	0.68706	0.00036876	536.7292246313925	58.897	1.2135	58.883	58.523	59.736	-0.014267					139	42	5	0	0	0	0.24581	1	14233	14233		16.942	0	1	7248900	+		57901	21045	33169	33170	70890	70890					-0.08982202761490043
YEDALPILV	9	Unmodified	_YEDALPILV_					0	0	0			REV__ENSG00000134453|ENST00000379888|RBM17	REV__ENSG00000134453|ENST00000379888|RBM17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2528686523438	2	516.784233	1031.55391	0.36116	0.00018664	-1.3821	-0.00071422	-1.0209	-0.00052758	516.7839298526078	82.524	1.7956	82.597	82.073	83.869	0.073097					121	71	2	0	0	0	0.24311	1	21642	21642		16.942	2.3606	1	412600	+		57902	15677	33170	33171	70891	70891					0.039398050088948366
YEDSVIQSVF	10	Unmodified	_YEDSVIQSVF_					0	0	0		ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3	ENSG00000198300|ENST00000326441|PEG3	ENSG00000198300|ENST00000326441|PEG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.7857666015625	2	593.784961	1185.55537	0.49852	0.00029601	0.81602	0.00048454	1.3145	0.00078056	593.7853230764388	82.154	1.3926	82.154	81.558	82.95	0					100	52	3	0	0	0	0.38233	2	21411	21356;21411		6.7232	3.5965	1	601150			57903	8061	33171	33172	70892;70893	70893					-0.029986056930056293
YEDSVIQSVF	10	Unmodified	_YEDSVIQSVF_					0	0	0		ENSG00000198300|ENST00000326441|PEG3;nc|ENSG00000198300|Q9GZU2-2|PEG3;nc|ENSG00000198300|Q9GZU2-4|PEG3	ENSG00000198300|ENST00000326441|PEG3	ENSG00000198300|ENST00000326441|PEG3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7857666015625	2	593.784961	1185.55537	0.50009	0.00029694	0.13732	8.1539E-05	0.63741	0.00037848	593.7852071606184	82.233	2.4344	82.209	81.395	83.829	-0.02404					307	100	6	0	0	0	0.38233	1	21307	21307		6.7232	0.51738	1	964350			57904	8061	33171	33172	70894	70894					-0.029986056930056293
YEEFFPRMDK	10	Unmodified	_YEEFFPRMDK_					0	0	0			REV__ENSG00000119915|ENST00000370005|ELOVL3	REV__ENSG00000119915|ENST00000370005|ELOVL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.8759765625	3	454.544667	1360.61217	-1.1119	-0.0005054	0.045688	2.0767E-05	-1.0662	-0.00048463	454.54469543247194	35.026	0.50085	35.101	34.788	35.288	0.075306					33	17	3	0	0	0	0.3213	1	6979	6979		1.9064	0.45126	1	375860	+		57905	15064	33172	33173	70895	70895					-0.053708814081346645
YEEFFPRMDK	10	Unmodified	_YEEFFPRMDK_					0	0	0			REV__ENSG00000119915|ENST00000370005|ELOVL3	REV__ENSG00000119915|ENST00000370005|ELOVL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.8762512207031	3	454.544667	1360.61217	-0.84508	-0.00038413	0.40246	0.00018294	-0.44262	-0.00020119	454.5449251477396	34.957	0.57885	35.034	34.704	35.283	0.077377					36	20	2	0	0	0	0.32033	1	6970	6970		4.1895	0	1	253410	+		57906	15064	33172	33173	70896	70896					-0.053708814081346645
YEEMKSSYCSV	11	Unmodified	_YEEMKSSYCSV_					0	0	0		nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	442.5179748535156	3	442.51779	1324.53154	0.12234	5.4139E-05	0.884	0.00039118	1.0063	0.00044532	442.5181415604098	46.315	0.89551	46.375	45.984	46.879	0.059834					85	32	4	0	0	0	0.43809	1	10425	10425		6.2344	1.8282	1	1013900			57907	598	33173	33174	70897	70897					-0.11774530513321224
YEFCASLEF	9	Unmodified	_YEFCASLEF_					0	0	0			REV__nc|nan|Q6P1X6-2|C8orf82	REV__nc|nan|Q6P1X6-2|C8orf82	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2847290039062	2	554.736425	1107.4583	0.11713	6.4977E-05	1.1801	0.00065465	1.2972	0.00071963	554.736842080642	60.257	0.29561	60.245	60.108	60.404	-0.011486					13	10	2	0	0	0	0.24913	1	14710	14710		12.532	0	1	169730	+		57908	19040	33174	33175	70898	70898					-0.09113291173639482
YEFESPDRI	9	Unmodified	_YEFESPDRI_					0	0	0			REV__nc|ENSG00000248905|Q68DA7-5|FMN1	REV__nc|ENSG00000248905|Q68DA7-5|FMN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.2700805664062	2	578.269478	1154.5244	0.34189	0.0001977	-0.44692	-0.00025844	-0.10503	-6.0734E-05	578.2689862666524	53.214	0.92619	53.204	52.889	53.815	-0.0096092					78	34	3	0	0	0	0.22188	1	12613	12613		20.454	0	1	2123100	+		57909	23215	33175	33176	70899	70899					-0.046677590072249586
YEFNWIFVL	9	Unmodified	_YEFNWIFVL_					0	0	0		RBM46|p.R91Nfs*13|1|0.06|ENSG00000151962|chr4:154797929-154797930|-/AATTGGATATTTGTACTCA|frameshift_variant	RBM46|p.R91Nfs*13|1|0.06|ENSG00000151962|chr4:154797929-154797930|-/AATTGGATATTTGTACTCA|frameshift_variant	RBM46|p.R91Nfs*13|1|0.06|ENSG00000151962|chr4:154797929-154797930|-/AATTGGATATTTGTACTCA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	615.3145751953125	2	615.813325	1229.6121	0.24432	0.00015045	-1.5258	-0.0009396	-1.2815	-0.00078914	615.8126787957357	66.727	1.4729	66.727	66.369	67.842	0					118	50	4	0	0	0	0.32885	1	16860	16860		7.2892	0	1	2830700			57910	13060	33176	33177	70900	70900					0.0064748665417937445
YEGSPVSKGIL	11	Unmodified	_YEGSPVSKGIL_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.2898559570312	2	575.311146	1148.60774	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.803	1	65.803	65.303	66.303	0								0	0	0	0.29456	1	16435	16435		20.415	4.5674	1				57911	6169	33177	33178	70901	70901					0.039379774406370416
YEHVGYTTL	9	Unmodified	_YEHVGYTTL_					0	0	0		ENSG00000128656|ENST00000409900|CHN1;nc|ENSG00000128656|P15882-3|CHN1	ENSG00000128656|ENST00000409900|CHN1	ENSG00000128656|ENST00000409900|CHN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7591552734375	2	541.761289	1081.50803	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.681	1	24.681	24.181	25.181	0								0	0	0	0.2575	1	3823	3823		3.9444	1.3669	1				57912	3386	33178	33179	70902	70902					-0.02946840173331111
YEIEKRLS	8	Unmodified	_YEIEKRLS_					0	0	0		nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8;ENST00000490635.1_1_X:54026257-54040884:-|nuORF	nc|ENSG00000172943|Q9UPP1-5|PHF8	nc|ENSG00000172943|Q9UPP1-5|PHF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7876586914062	2	519.284931	1036.55531	0.42832	0.00022242	0.50005	0.00025967	0.92837	0.00048209	519.285428057323	44.115	1.038	44.192	43.71	44.748	0.077518					77	35	3	0	0	0	0.3671	1	9691	9691		23.148	0	1	2263700			57913	6679	33179	33180	70903	70903					0.03849439097666618
YEIERKHF	8	Unmodified	_YEIERKHF_					0	0	0			REV__nc|ENSG00000076344|O94810-3|RGS11	REV__nc|ENSG00000076344|O94810-3|RGS11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2796630859375	2	561.290548	1120.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.85	1	88.85	88.35	89.35	0								0	0	0	0.36961	1	23487	23487		5.7604	0.46354	1		+		57914	13827	33180	33181	70904	70904					0.011082611918027396
YEIIKKNIW	9	Unmodified	_YEIIKKNIW_					0	0	0			REV__ENSG00000119707|ENST00000261973|RBM25	REV__ENSG00000119707|ENST00000261973|RBM25	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.3138427734375	2	603.847699	1205.68084	1.0093	0.00060945	-1.2587	-0.00076004	-0.24938	-0.00015059	603.8468394727239	50.344	0.53499	50.365	50.177	50.712	0.020691					26	19	2	0	0	0	0.25526	1	11736	11736		7.9102	1.187	1	207990	+		57915	15055	33181	33182	70905	70905					0.08623150953872027
YEIIKKNIW	9	Unmodified	_YEIIKKNIW_					0	0	0			REV__ENSG00000119707|ENST00000261973|RBM25	REV__ENSG00000119707|ENST00000261973|RBM25	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	603.847699	1205.68084	0.74896	0.00045226	-1.4092	-0.00085093	-0.66022	-0.00039867	603.8469799471578	50.369	0.43067	50.369	50.138	50.569	0	0.015078	-0.00027245	NaN	7.9102	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206910	+		57916	15055	33181	33182							0.08623150953872027
YEIIKKNIW	9	Unmodified	_YEIIKKNIW_					0	0	0			REV__ENSG00000119707|ENST00000261973|RBM25	REV__ENSG00000119707|ENST00000261973|RBM25	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	603.847699	1205.68084	1.1316	0.0006833	-0.91106	-0.00055014	0.22051	0.00013316	604.3484034490943	50.283	0.35995	50.328	50.16	50.52	0.044891	-0.026058	0.00032913	NaN	7.9102	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271110	+		57917	15055	33181	33182							0.08623150953872027
YEILQHLGF	9	Unmodified	_YEILQHLGF_					0	0	0			REV__ENSG00000125703|ENST00000317868|ATG4C	REV__ENSG00000125703|ENST00000317868|ATG4C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8162231445312	2	560.295299	1118.57605	0.35665	0.00019983	-0.35412	-0.00019841	0.0025279	1.4163E-06	560.295006510359	57.014	0.70519	57.092	56.778	57.484	0.078674					65	25	4	0	0	0	0.10197	1	13838	13838		37.974	3.8716	1	1326600	+		57918	15280	33182	33183	70906	70906					0.02150029477343196
YEKFKETIL	9	Unmodified	_YEKFKETIL_					0	0	0		nc|ENSG00000165837|Q5W0A0-2|ERICH6B;ENSG00000165837|ENST00000298738|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.8137817382812	2	585.823889	1169.63323	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.649	1	98.642	98.142	99.142	-0.006897								0	0	0	0.25631	1	26432	26432		4.3292	0.38484	1				57919	6006	33183	33184	70907	70907					0.055194519630504146
YEKFKLYLT	9	Unmodified	_YEKFKLYLT_					0	0	0		ENSG00000188735|ENST00000449592|TMEM120B;nc|ENSG00000189077|Q9BXJ8-2|TMEM120A;ENSG00000189077|ENST00000493111|TMEM120A	ENSG00000188735|ENST00000449592|TMEM120B;nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.3140869140625	2	602.834257	1203.65396	0.87514	0.00052756	-0.70329	-0.00042397	0.17185	0.0001036	602.8336834140592	50.869	0.40019	50.869	50.654	51.055	0					23	14	2	0	0	0	0.24913	1	11787	11787		12.532	0	1	314800			57920	7770;7800	33184	33185	70908	70908					0.06028042342700246
YEKFKLYLT	9	Unmodified	_YEKFKLYLT_					0	0	0		ENSG00000188735|ENST00000449592|TMEM120B;nc|ENSG00000189077|Q9BXJ8-2|TMEM120A;ENSG00000189077|ENST00000493111|TMEM120A	ENSG00000188735|ENST00000449592|TMEM120B;nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3140258789062	2	602.834257	1203.65396	0.80519	0.00048539	-0.57993	-0.0003496	0.22526	0.00013579	602.8339484239397	50.826	0.40856	50.873	50.684	51.092	0.046574					24	14	2	0	0	0	0.24913	1	11765	11765		12.532	0	1	263660			57921	7770;7800	33184	33185	70909	70909					0.06028042342700246
YEKFKLYLT	9	Unmodified	_YEKFKLYLT_					0	0	0		ENSG00000188735|ENST00000449592|TMEM120B;nc|ENSG00000189077|Q9BXJ8-2|TMEM120A;ENSG00000189077|ENST00000493111|TMEM120A	ENSG00000188735|ENST00000449592|TMEM120B;nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	602.834257	1203.65396	0.6688	0.00040318	-0.27522	-0.00016591	0.39359	0.00023727	602.8340892546134	50.933	0.36203	50.942	50.757	51.119	0.0095673	0.047673	0.00030266	NaN	12.532	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338070			57922	7770;7800	33184	33185							0.06028042342700246
YEKGKIIVID	10	Unmodified	_YEKGKIIVID_					0	0	0			REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.34375	2	589.344989	1176.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.83	1	113.83	113.33	114.33	0								0	0	0	0.38126	1	29557	29557		1.6526	0	1		+		57923	22977	33185	33186	70910	70910					0.09415427371413898
YEKLDDKLLR	10	Unmodified	_YEKLDDKLLR_					0	0	0			REV__ENST00000478361.6_1_10:94234505-94239065:-|nuORF	REV__ENST00000478361.6_1_10:94234505-94239065:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	431.56646728515625	3	431.578477	1291.7136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.431	1	37.431	36.931	37.931	0								0	0	0	0.35788	1	7707	7707		7.0371	1.1689	1		+		57924	21449	33186	33187	70911	70911					0.07941313286073637
YEKLDDKLLR	10	Unmodified	_YEKLDDKLLR_					0	0	0			REV__ENST00000478361.6_1_10:94234505-94239065:-|nuORF	REV__ENST00000478361.6_1_10:94234505-94239065:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.56640625	3	431.578477	1291.7136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.305	1	37.392	36.892	37.892	0.08741								0	0	0	0.35954	1	7668	7668		6.6235	2.7775	1		+		57925	21449	33186	33187	70912	70912					0.07941313286073637
YEKQDPGILA	10	Unmodified	_YEKQDPGILA_					0	0	0			REV__ENSG00000130158|ENST00000294618|DOCK6	REV__ENSG00000130158|ENST00000294618|DOCK6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2782592773438	2	567.295496	1132.57644	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.8	1	119.77	119.27	120.27	-0.024361								0	0	0	0.37664	1	30913	30913		3.5965	0	1		+		57926	15439	33187	33188	70913	70913					0.015454044065336348
YELFEKPY	8	Unmodified	_YELFEKPY_					0	0	0		nc|ENSG00000173875|Q3KP31-2|ZNF791;ZNF791|p.T543Qfs*25|1|0.31|ENSG00000173875|chr19:12629156-12629156|A/-|frameshift_variant;ENSG00000173875|ENST00000343325|ZNF791	nc|ENSG00000173875|Q3KP31-2|ZNF791	nc|ENSG00000173875|Q3KP31-2|ZNF791	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3170776367188	2	544.768583	1087.52261	0.71023	0.00038691	-3.897	-0.002123	-3.1868	-0.0017361	544.767021826859	87.633	0.50484	87.627	87.304	87.809	-0.0056229					34	26	2	0	0	0	0.33993	1	23010	23010		11.64	3.047	1	102380			57927	6757	33188	33189	70914	70914					-0.017647680251684505
YELFLSNN	8	Unmodified	_YELFLSNN_					0	0	0			REV__nc|ENSG00000116748|P23109-2|AMPD1	REV__nc|ENSG00000116748|P23109-2|AMPD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.25872802734375	2	500.242732	998.470912	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.415	1	31.456	30.956	31.956	0.040991								0	0	0	0.35251	1	5863	5863		13.508	3.3245	1		+		57928	14936	33189	33190	70915	70915					-0.028385117190850906
YELLPALDEVL	11	Unmodified	_YELLPALDEVL_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.32666015625	2	637.847561	1273.68057	0.57135	0.00036443	-0.59737	-0.00038103	-0.02602	-1.6597E-05	637.8466640110825	84.745	0.44496	84.745	84.527	84.972	0					22	16	2	0	0	0	0.33149	1	22172	22172		5.2969	0	1	118960			57929	2212	33190	33191	70916	70916					0.05467686443353159
YELNVKMLF	9	Unmodified	_YELNVKMLF_					0	0	0			REV__ENSG00000120029|ENST00000370033|ARMH3	REV__ENSG00000120029|ENST00000370033|ARMH3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.268798828125	2	578.807185	1155.59982	0.33113	0.00019166	0.98545	0.00057039	1.3166	0.00076205	578.8089176557577	52.915	0.21494	52.915	52.797	53.012	0					10	7	2	0	0	0	0.24688	1	12480	12480		10.074	4.3421	1	131760	+		57930	15072	33191	33192	70917	70917					0.028241269194722918
YELYKEKVF	9	Unmodified	_YELYKEKVF_					0	0	0			REV__ENSG00000189023|ENST00000399988|MAGEB16	REV__ENSG00000189023|ENST00000399988|MAGEB16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.8235473632812	2	609.823889	1217.63323	0.33874	0.00020657	-0.35454	-0.00021621	-0.0158	-9.6352E-06	609.8238201800086	76.273	0.51806	76.241	76.049	76.567	-0.031487					49	18	3	0	0	0	0.2869	1	19601	19601		10.824	1.4408	1	501420	+		57931	18592	33192	33193	70918	70918					0.03311451963031686
YELYKEKVF	9	Unmodified	_YELYKEKVF_					0	0	0			REV__ENSG00000189023|ENST00000399988|MAGEB16	REV__ENSG00000189023|ENST00000399988|MAGEB16	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	609.823889	1217.63323	0.22037	0.00013439	-0.59931	-0.00036548	-0.37894	-0.00023109	609.8237300426813	76.199	0.5205	76.253	75.992	76.512	0.053413	0.003612	-0.00014789	NaN	10.824	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	398370	+		57932	18592	33192	33193							0.03311451963031686
YENIRHYEEI	10	Unmodified	_YENIRHYEEI_					0	0	0		nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.2586975097656	3	455.88597	1364.63608	-0.01447	-6.5966E-06	0.86377	0.00039378	0.8493	0.00038718	456.2211218972521	25.06	0.53273	25.004	24.862	25.395	-0.055931					27	18	2	0	0	0	0.32106	1	3933	3933		2.8433	0.4085	1	42201			57933	7174	33193	33194	70919	70919					-0.03165324650080947
YENSGRIA	8	Unmodified	_YENSGRIA_					0	0	0			REV__ENSG00000164056|ENST00000651917|SPRY1	REV__ENSG00000164056|ENST00000651917|SPRY1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.24273681640625	2	455.224874	908.435195	-0.17909	-8.1526E-05	-0.36456	-0.00016596	-0.54365	-0.00024748	455.2245818155948	14.21	0.19402	14.21	14.055	14.249	0					10	6	2	0	0	0	0.34272	1	658	658		7.9102	0.62092	1	22449	+		57934	17119	33194	33195	70920	70920					-0.022685491760853438
YENSGRIA	8	Unmodified	_YENSGRIA_					0	0	0			REV__ENSG00000164056|ENST00000651917|SPRY1	REV__ENSG00000164056|ENST00000651917|SPRY1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2424011230469	2	455.224874	908.435195	-0.15006	-6.8313E-05	-0.40133	-0.00018269	-0.55139	-0.00025101	455.22463335244777	14.341	0.16834	14.236	14.105	14.273	-0.10466					8	5	2	0	0	0	0.34039	1	687	687		15.847	1.0089	1	32334	+		57935	17119	33194	33195	70921	70921					-0.022685491760853438
YEPSVQFYNRI	11	Unmodified	_YEPSVQFYNRI_					0	0	0			REV__ENSG00000091986|ENST00000206423|CCDC80	REV__ENSG00000091986|ENST00000206423|CCDC80	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.2765197753906	3	472.569981	1414.68811	0.015802	7.4674E-06	-1.1047	-0.00052205	-1.0889	-0.00051458	472.56994203117137	30.903	0.50334	30.903	30.781	31.284	0					31	17	3	0	0	0	0.33296	1	5777	5777		2.6312	2.223	1	120110	+		57936	14072	33195	33196	70922	70922					-0.0026416123632770905
YEQELHQI	8	Unmodified	_YEQELHQI_					0	0	0			REV__ENSG00000198765|ENST00000369522|SYCP1	REV__ENSG00000198765|ENST00000369522|SYCP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.3681640625	2	530.258914	1058.50327	0.55488	0.00029423	-0.86144	-0.00045679	-0.30657	-0.00016256	530.2583563914632	36.187	0.61506	36.269	36.036	36.651	0.082355					29	21	2	0	0	0	0.34313	1	7416	7416		6.7232	0	1	261310	+		57937	18858	33196	33197	70923	70923					-0.023637243160919752
YEQELHQI	8	Unmodified	_YEQELHQI_					0	0	0			REV__ENSG00000198765|ENST00000369522|SYCP1	REV__ENSG00000198765|ENST00000369522|SYCP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	530.258914	1058.50327	0.60004	0.00031818	-0.13702	-7.2658E-05	0.46301	0.00024552	530.258777990775	36.289	0.44328	36.289	36.093	36.536	0	0.035333	0.00069101	NaN	6.7232	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266150	+		57938	18858	33196	33197							-0.023637243160919752
YEQELHQI	8	Unmodified	_YEQELHQI_					0	0	0			REV__ENSG00000198765|ENST00000369522|SYCP1	REV__ENSG00000198765|ENST00000369522|SYCP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	530.258914	1058.50327	0.76773	0.0004071	-1.4019	-0.00074337	-0.63416	-0.00033627	530.2584507838095	36.116	0.39247	36.202	36.059	36.451	0.086246	-0.051465	-0.00065041	NaN	6.7232	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239490	+		57939	18858	33196	33197							-0.023637243160919752
YEQESYVPV	9	Unmodified	_YEQESYVPV_					0	0	0			REV__ENSG00000178028|ENST00000372289|DMAP1	REV__ENSG00000178028|ENST00000372289|DMAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.8110961914062	2	557.258579	1112.50261	0.39383	0.00021947	-2.3557	-0.0013127	-1.9619	-0.0010933	557.258927707826	82.673	0.57539	82.746	82.428	83.003	0.073097					45	22	4	0	0	0	0.21905	1	21527	21527		23.148	3.7094	1	165270	+		57940	18011	33197	33198	70924	70924					-0.049145637558240196
YEQSFPVANF	10	Unmodified	_YEQSFPVANF_					0	0	0			REV__ENSG00000182631|ENST00000330120|RXFP3	REV__ENSG00000182631|ENST00000330120|RXFP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.2787475585938	2	601.279846	1200.54514	0.58296	0.00035052	-0.26979	-0.00016222	0.31317	0.0001883	601.2797501504701	58.401	0.5539	58.401	58.1	58.654	0					34	18	2	0	0	0	0.34795	1	14189	14189		13.042	0	1	394510	+		57941	18207	33198	33199	70925	70925					-0.047111686275684406
YERAFHEK	8	Unmodified	_YERAFHEK_					0	0	0			REV__ENSG00000174405|ENST00000442234|LIG4	REV__ENSG00000174405|ENST00000442234|LIG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2784423828125	2	540.267073	1078.51959	0.13134	7.0959E-05	-3.5012	-0.0018916	-3.3698	-0.0018206	540.2654185801938	14.193	0.1626	14.088	14.023	14.185	-0.10466					7	5	2	0	0	0	0.34353	1	682	682		4.756	0.42677	1	40355	+		57942	17830	33199	33200	70926	70926					-0.01652598359351032
YERALDRVRRK	11	Unmodified	_YERALDRVRRK_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2742004394531	3	487.951419	1460.83243	0.16409	8.0068E-05	1.6632	0.00081155	1.8273	0.00089162	487.9524213673234	16.376	0.50636	16.376	16.152	16.659	0					35	17	3	0	0	0	0.46704	1	1314	1314		2.4348	0.18206	1	72076	+		57943	18951	33200	33201	70927	70927					0.12044525034275466
YERFDVYFY	9	Unmodified	_YERFDVYFY_					0	0	0			REV__nc|ENSG00000122025|P36888-2|FLT3	REV__nc|ENSG00000122025|P36888-2|FLT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7796325683594	3	434.532756	1300.57644	-1.0614	-0.00046121	-0.52885	-0.0002298	-1.5902	-0.00069101	434.5324443657167	35.139	0.82284	35.139	34.697	35.52	0					71	29	3	0	0	0	0.26099	1	7060	7060		1.1933	0.12188	1	478980	+		57944	15144	33201	33202	70928	70928					-0.06182595593463702
YERLFRWLVHR	11	Unmodified	_YERLFRWLVHR_					0	0	0		MYH10|p.T548Cfs*26|1|0.05|ENSG00000133026|chr17:8535865-8535866|-/GCTGATAAACA|frameshift_variant;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	MYH10|p.T548Cfs*26|1|0.05|ENSG00000133026|chr17:8535865-8535866|-/GCTGATAAACA|frameshift_variant	MYH10|p.T548Cfs*26|1|0.05|ENSG00000133026|chr17:8535865-8535866|-/GCTGATAAACA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.278076171875	3	525.628276	1573.863	0.35601	0.00018713	-1.4783	-0.00077703	-1.1223	-0.0005899	525.6275500356215	22.703	0.5126	22.658	22.438	22.951	-0.044867					29	17	2	0	0	0	0.33347	1	3261	3261		0.45452	0.087843	1	97885			57945	3686	33202	33203	70929	70929					0.0990230341935785
YERMDVIN	8	Unmodified	_YERMDVIN_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.278564453125	2	520.247492	1038.48043	0.412	0.00021434	0.56303	0.00029291	0.97503	0.00050726	520.2477790039192	68.145	0.20245	68.145	68.048	68.25	0					11	7	2	0	0	0	0.34039	1	17161	17161		15.847	1.0089	1	150520	+		57946	17970	33203	33204	70930	70930					-0.03727066705209836
YERQLQIYI	9	Unmodified	_YERQLQIYI_					0	0	0			REV__ENSG00000103966|ENST00000220325|EHD4	REV__ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2242126464844	3	409.224034	1224.65027	0.20128	8.2368E-05	0.12204	4.994E-05	0.32332	0.00013231	409.2239793980103	47.93	1.0039	47.93	47.578	48.582	0					96	35	3	0	0	0	0.29124	1	10930	10930		10.151	1.7063	1	9463500	+		57947	14389	33204	33205	70931	70931					0.046933725688631966
YERYTRWW	8	Unmodified	_YERYTRWW_					0	0	0			REV__ENSG00000204316|ENST00000309352|MRPL38;REV__ENST00000493104.5_1_17:73897660-73900929:-|nuORF	REV__ENST00000493104.5_1_17:73897660-73900929:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.2987670898438	2	630.301447	1258.58834	NaN	NaN	NaN	NaN	NaN	NaN	NaN	17.124	1	17.006	16.506	17.506	-0.11739								0	0	0	0.37825	1	1537	1537		1.8442	0.6509	1		+		57948	18934;21633	33205	33206	70932	70932					-0.03060934059635656
YESLIEALYF	10	Unmodified	_YESLIEALYF_					0	0	0		ENST00000489922.5_1_13:73544805-73590054:+|nuORF	ENST00000489922.5_1_13:73544805-73590054:+|nuORF	ENST00000489922.5_1_13:73544805-73590054:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.312255859375	2	624.313354	1246.61216	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.101	1	84.085	83.585	84.585	-0.016823								0	0	0	0.37664	1	22019	22019		3.5965	0	1				57949	11155	33206	33207	70933	70933					-0.001285581364754762
YETDEEGEC	9	Unmodified	_YETDEEGEC_					0	0	0			REV__ENSG00000110395|ENST00000264033|CBL	REV__ENSG00000110395|ENST00000264033|CBL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.2828979492188	2	537.682044	1073.34954	0.20533	0.0001104	0.31832	0.00017115	0.52365	0.00028155	537.6823146352936	18.341	0.42762	18.283	18.031	18.458	-0.058174					21	14	2	0	0	0	0.26282	1	1937	1937		0	0	1	64483	+		57950	14667	33207	33208	70934	70934					-0.18420546934567028
YETDEEGEC	9	Unmodified	_YETDEEGEC_					0	0	0			REV__ENSG00000110395|ENST00000264033|CBL	REV__ENSG00000110395|ENST00000264033|CBL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	537.682044	1073.34954	0.36222	0.00019476	0.12561	6.754E-05	0.48783	0.0002623	537.6822509280039	18.166	0.51887	18.166	17.96	18.479	0	-0.060873	-0.00013985	NaN	0	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57197	+		57951	14667	33207	33208							-0.18420546934567028
YETDEEGEC	9	Unmodified	_YETDEEGEC_					0	0	0			REV__ENSG00000110395|ENST00000264033|CBL	REV__ENSG00000110395|ENST00000264033|CBL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	537.682044	1073.34954	0.20293	0.00010911	0.28143	0.00015132	0.48436	0.00026043	537.6822769275984	18.35	0.48284	18.232	17.957	18.44	-0.11739	0.0053465	2.7701E-05	NaN	0	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70425	+		57952	14667	33207	33208							-0.18420546934567028
YETFLRIF	8	Unmodified	_YETFLRIF_					0	0	0			REV__ENST00000414990.2_3_7:143295168-143301929:+|nuORF	REV__ENST00000414990.2_3_7:143295168-143301929:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2839965820312	2	544.792392	1087.57023	1.0798	0.00058825	-0.54448	-0.00029663	0.53529	0.00029162	544.7929497205371	55.993	4.5378	56.064	55.618	60.156	0.070889					447	165	6	0	0	0	0.17761	1	14122	14122		46.921	4.8263	1	384440000	+		57953	18823	33208	33209	70935	70935					0.029949309656331025
YETLDAKKF	9	Unmodified	_YETLDAKKF_					0	0	0			REV__nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2	REV__nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.7736206054688	2	557.792589	1113.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.623	1	67.623	67.123	68.123	0								0	0	0	0.17683	1	16991	16991		28.487	12.64	1		+		57954	17542	33209	33210	70936	70936					0.01838305894852965
YETLDAKKF	9	Unmodified	_YETLDAKKF_					0	0	0			REV__nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2	REV__nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7735595703125	2	557.792589	1113.57063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.434	1	67.512	67.012	68.012	0.078041								0	0	0	0.17683	1	16925	16925		28.487	12.64	1		+		57955	17542	33209	33210	70937	70937					0.01838305894852965
YETLPREID	9	Unmodified	_YETLPREID_					0	0	0		nc|ENSG00000141314|P58872-2|RHBDL3;nc|ENSG00000141314|P58872-3|RHBDL3;ENSG00000141314|ENST00000269051|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.2880859375	2	568.285128	1134.5557	0.54963	0.00031235	0.97232	0.00055256	1.522	0.0008649	568.2877876720073	78.899	0.95794	78.957	78.554	79.512	0.058151					123	41	6	0	0	0	0.2451	1	20405	20405		15.847	4.2069	1	1027300			57956	4366	33210	33211	70938	70938					-0.006191859731416116
YETLWRKH	8	Unmodified	_YETLWRKH_					0	0	0		ENST00000504411.1_1_5:135396881-135398912:+|nuORF	ENST00000504411.1_1_5:135396881-135398912:+|nuORF	ENST00000504411.1_1_5:135396881-135398912:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2462158203125	2	566.79854	1131.58253	0.18906	0.00010716	2.6369	0.0014946	2.826	0.0016018	566.8001087171231	18.593	0.38309	18.475	18.295	18.678	-0.11739					17	12	2	0	0	0	0.344	1	2030	2030		2.5775	0	1	49047			57957	11298	33211	33212	70939	70939					0.021999674287144444
YEVRSTFLF	9	Unmodified	_YEVRSTFLF_					0	0	0		ENSG00000257138|ENST00000547270|TAS2R38	ENSG00000257138|ENST00000547270|TAS2R38	ENSG00000257138|ENST00000547270|TAS2R38	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3010864257812	2	581.300581	1160.58661	0.41431	0.00024084	-0.22882	-0.00013301	0.1855	0.00010783	581.300399817127	76.926	2.0771	76.926	76.338	78.415	0					192	76	5	0	0	0	0.088391	1	20239	20239		39.957	3.9131	1	5802100			57958	8634	33212	33213	70940	70940					0.012740121317619924
YEVSMSYLE	9	Unmodified	_YEVSMSYLE_					0	0	0		ENSG00000196169|ENST00000389916|KIF19;nc|ENSG00000196169|Q2TAC6-3|KIF19;ENST00000359939.10_1_17:72322488-72347101:+|nuORF;nc|ENSG00000196169|Q2TAC6-2|KIF19;ENST00000547389.1_1_17:72322488-72347101:+|nuORF	ENSG00000196169|ENST00000389916|KIF19	ENSG00000196169|ENST00000389916|KIF19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.7476196289062	2	560.74699	1119.47943	0.483	0.00027084	1.1463	0.00064276	1.6293	0.0009136	560.7472287696871	85.899	0.90155	85.899	85.527	86.429	0					67	33	3	0	0	0	0.21303	1	22569	22569		21.747	1.293	1	626770			57959	7831	33213	33214	70941	70941					-0.07553325864796534
YEVSMSYLE	9	Unmodified	_YEVSMSYLE_					0	0	0		ENSG00000196169|ENST00000389916|KIF19;nc|ENSG00000196169|Q2TAC6-3|KIF19;ENST00000359939.10_1_17:72322488-72347101:+|nuORF;nc|ENSG00000196169|Q2TAC6-2|KIF19;ENST00000547389.1_1_17:72322488-72347101:+|nuORF	ENSG00000196169|ENST00000389916|KIF19	ENSG00000196169|ENST00000389916|KIF19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.7474365234375	2	560.74699	1119.47943	0.48165	0.00027009	1.0098	0.00056626	1.4915	0.00083635	560.747136236464	85.83	0.75147	85.915	85.618	86.369	0.084251					68	27	3	0	0	0	0.17787	1	22558	22558		26.884	0	1	423480			57960	7831	33213	33214	70942	70942					-0.07553325864796534
YEVSMSYLE	9	Unmodified	_YEVSMSYLE_					0	0	0		ENSG00000196169|ENST00000389916|KIF19;nc|ENSG00000196169|Q2TAC6-3|KIF19;ENST00000359939.10_1_17:72322488-72347101:+|nuORF;nc|ENSG00000196169|Q2TAC6-2|KIF19;ENST00000547389.1_1_17:72322488-72347101:+|nuORF	ENSG00000196169|ENST00000389916|KIF19	ENSG00000196169|ENST00000389916|KIF19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7474365234375	2	560.74699	1119.47943	0.44513	0.00024961	1.0732	0.00060177	1.5183	0.00085138	560.747183608221	85.914	0.69444	85.905	85.644	86.339	-0.0090103					71	25	4	0	0	0	0.1669	3	22599	22550;22599;22661		28.487	3.3156	1	617090			57961	7831	33213	33214	70943;70944;70945	70944					-0.07553325864796534
YEVSMSYLE	9	Unmodified	_YEVSMSYLE_					0	0	0		ENSG00000196169|ENST00000389916|KIF19;nc|ENSG00000196169|Q2TAC6-3|KIF19;ENST00000359939.10_1_17:72322488-72347101:+|nuORF;nc|ENSG00000196169|Q2TAC6-2|KIF19;ENST00000547389.1_1_17:72322488-72347101:+|nuORF	ENSG00000196169|ENST00000389916|KIF19	ENSG00000196169|ENST00000389916|KIF19	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.74699	1119.47943	0.483	0.00027084	1.1463	0.00064276	1.6293	0.0009136	560.7472287696871	85.899	0.90155	85.899	85.527	86.429	0	-0.0070793	7.572E-05	NaN	28.487	67	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	626770			57962	7831	33213	33214							-0.07553325864796534
YEYHEDFYK	9	Unmodified	_YEYHEDFYK_					0	0	0			REV__ENSG00000123975|ENST00000314355|CKS2	REV__ENSG00000123975|ENST00000314355|CKS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.18634033203125	3	431.852266	1292.53497	-0.27361	-0.00011816	0.11735	5.0676E-05	-0.15626	-6.7482E-05	431.8522640214433	39.894	1.2073	39.894	39.48	40.688	0					112	43	4	0	0	0	0.33018	1	8523	8523		2.4985	0.59211	1	1179300	+		57963	15202	33214	33215	70946	70946					-0.09959776352820882
YEYNVVPF	8	Unmodified	_YEYNVVPF_					0	0	0		ENSG00000160161|ENST00000291495|CILP2	ENSG00000160161|ENST00000291495|CILP2	ENSG00000160161|ENST00000291495|CILP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7586059570312	2	515.74765	1029.48075	0.064248	3.3136E-05	-0.68536	-0.00035347	-0.62111	-0.00032034	515.7472765082061	17.904	0.88707	17.786	17.355	18.242	-0.11739					49	30	2	0	0	0	0.45015	1	1851	1851		5.7604	5.7604	1	44708			57964	5440	33215	33216	70947	70947					-0.03281323713713391
YEYTWHSFA	9	Unmodified	_YEYTWHSFA_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7;REV__nc|ENSG00000119121|Q9BX84-7|TRPM6	REV__ENSG00000092439|ENST00000646667|TRPM7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.3059692382812	2	602.258914	1202.50327	0.82476	0.00049672	-2.6546	-0.0015987	-1.8298	-0.001102	602.2571039302572	55.763	0.28642	55.834	55.646	55.932	0.070885					20	10	3	0	0	0	0.25526	1	13358	13358		7.9102	1.187	1	198050	+		57965	14081;15028	33216	33217	70948	70948					-0.08987724316079948
YFAALSPAITF	11	Unmodified	_YFAALSPAITF_					0	0	0		ENSG00000004939|ENST00000262418|SLC4A1;nc|ENSG00000004939|P02730-2|SLC4A1;ENST00000493040.5_1_7:150768589-150768772:+|nuORF;ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3;nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.P928Sfs*28|1|0.33|ENSG00000164889|chr7:151074281-151074282|-/T|frameshift_variant	ENSG00000004939|ENST00000262418|SLC4A1;ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000164889|P04920-2|SLC4A2	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.8185424804688	2	600.818607	1199.62266	0.33003	0.00019829	-0.72474	-0.00043544	-0.39471	-0.00023715	600.8181050899619	76.244	0.52442	76.244	75.976	76.501	0					41	18	3	0	0	0	0.35522	3	19612	19612;19664;19680		17.113	8.3675	1	537850			57966	2594;5891;320	33217	33218	70949;70950;70951	70949					0.030834693085807885
YFAALSPAITF	11	Unmodified	_YFAALSPAITF_					0	0	0		ENSG00000004939|ENST00000262418|SLC4A1;nc|ENSG00000004939|P02730-2|SLC4A1;ENST00000493040.5_1_7:150768589-150768772:+|nuORF;ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3;nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.P928Sfs*28|1|0.33|ENSG00000164889|chr7:151074281-151074282|-/T|frameshift_variant	ENSG00000004939|ENST00000262418|SLC4A1;ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000164889|P04920-2|SLC4A2	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.81884765625	2	600.818607	1199.62266	0.35588	0.00021382	-1.413	-0.00084897	-1.0571	-0.00063515	600.8181043437121	76.244	0.49047	76.297	75.992	76.482	0.053413					40	16	3	0	0	0	0.36257	1	19582	19582		16.149	4.6544	1	502900			57967	2594;5891;320	33217	33218	70952	70952					0.030834693085807885
YFAALSPAITF	11	Unmodified	_YFAALSPAITF_					0	0	0		ENSG00000004939|ENST00000262418|SLC4A1;nc|ENSG00000004939|P02730-2|SLC4A1;ENST00000493040.5_1_7:150768589-150768772:+|nuORF;ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3;nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.P928Sfs*28|1|0.33|ENSG00000164889|chr7:151074281-151074282|-/T|frameshift_variant	ENSG00000004939|ENST00000262418|SLC4A1;ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000164889|P04920-2|SLC4A2	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8182983398438	2	600.818607	1199.62266	0.42533	0.00025555	-0.74523	-0.00044775	-0.31989	-0.0001922	600.817965004234	76.275	0.54514	76.243	75.992	76.537	-0.031487					51	19	3	0	0	0	0.25499	2	19658	19609;19658		26.268	8.1218	1	639360			57968	2594;5891;320	33217	33218	70953;70954	70954					0.030834693085807885
YFAASNENESF	11	Unmodified	_YFAASNENESF_					0	0	0			REV__nc|ENSG00000187257|Q6PCB5-2|RSBN1L	REV__nc|ENSG00000187257|Q6PCB5-2|RSBN1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.393310546875	2	639.7673	1277.52005	0.62039	0.00039691	-1.1056	-0.00070734	-0.48522	-0.00031043	640.267800555896	47.696	0.086964	47.696	47.658	47.745	0					4	2	2	0	0	0	0.33175	1	10849	10849		4.897	0.95262	1	106580	+		57969	18499	33218	33219	70955	70955					-0.10761268220835518
YFALGLSGLVF	11	Unmodified	_YFALGLSGLVF_					0	0	0			REV__ENSG00000174529|ENST00000367167|TMEM81	REV__ENSG00000174529|ENST00000367167|TMEM81	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8294067382812	2	593.828975	1185.6434	0.32261	0.00019157	-0.043554	-2.5864E-05	0.27905	0.00016571	593.8296090304597	76.177	6.2714	76.231	75.782	82.053	0.053413					524	250	3	0	0	0	0.41896	1	21103	21103		8.7454	1.1365	1	87613000	+		57970	17841	33219	33220	70956	70956					0.05800059688249348
YFAWFFGAF	9	Unmodified	_YFAWFFGAF_					0	0	0			REV__ENSG00000198938|ENST00000362079|MT-CO3	REV__ENSG00000198938|ENST00000362079|MT-CO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7872314453125	2	578.268553	1154.52255	0.21561	0.00012468	0.11824	6.8373E-05	0.33385	0.00019305	578.268405207201	70.008	0.45304	70.008	69.787	70.24	0					28	16	2	0	0	0	0.22431	1	17782	17782		20.871	1.6142	1	159660	+		57971	18896	33220	33221	70957	70957					-0.04852723234535006
YFAWFFGAF	9	Unmodified	_YFAWFFGAF_					0	0	0			REV__ENSG00000198938|ENST00000362079|MT-CO3	REV__ENSG00000198938|ENST00000362079|MT-CO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.7875366210938	2	578.268553	1154.52255	0.26069	0.00015075	0.0056438	3.2636E-06	0.26634	0.00015401	578.2684472950195	69.991	0.44858	70.057	69.856	70.304	0.06604					24	15	2	0	0	0	0.22431	1	17775	17775		20.871	5.024	1	153290	+		57972	18896	33220	33221	70958	70958					-0.04852723234535006
YFCSSIGPGLN	11	Unmodified	_YFCSSIGPGLN_					0	0	0		ENST00000426861.5_1_17:56598198-56599363:-|nuORF;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;ENST00000584488.5_1_17:56598198-56606616:-|nuORF	ENST00000426861.5_1_17:56598198-56599363:-|nuORF	ENST00000426861.5_1_17:56598198-56599363:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.2512817382812	2	579.268424	1156.5223	0.30694	0.0001778	-1.1042	-0.00063962	-0.79724	-0.00046181	579.2677236594322	76.939	1.0047	76.995	76.566	77.571	0.05542					107	35	4	0	0	0	0.36943	1	19740	19740		15.248	2.206	1	614870			57973	10423	33221	33222	70959	70959					-0.049705110166542
YFCSSIGPGLN	11	Unmodified	_YFCSSIGPGLN_					0	0	0		ENST00000426861.5_1_17:56598198-56599363:-|nuORF;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;ENST00000584488.5_1_17:56598198-56606616:-|nuORF	ENST00000426861.5_1_17:56598198-56599363:-|nuORF	ENST00000426861.5_1_17:56598198-56599363:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	579.268424	1156.5223	0.38781	0.00022464	-1.3216	-0.00076555	-0.93377	-0.0005409	579.2674982071271	76.891	1.1048	76.891	76.559	77.663	0	-0.039705	1.1292E-06	NaN	15.248	117	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733530			57974	10423	33221	33222							-0.049705110166542
YFCSSIGPGLN	11	Unmodified	_YFCSSIGPGLN_					0	0	0		ENST00000426861.5_1_17:56598198-56599363:-|nuORF;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;ENST00000584488.5_1_17:56598198-56606616:-|nuORF	ENST00000426861.5_1_17:56598198-56599363:-|nuORF	ENST00000426861.5_1_17:56598198-56599363:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	579.268424	1156.5223	0.55493	0.00032145	-1.4518	-0.00084099	-0.89688	-0.00051954	579.2675835775883	76.937	1.0058	76.906	76.567	77.573	-0.031334	-0.024451	-0.00014976	NaN	15.248	109	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	713280			57975	10423	33221	33222							-0.049705110166542
YFDLGENQQ	9	Unmodified	_YFDLGENQQ_					0	0	0			REV__ENST00000396987.7_1_8:41478885-41479125:+|nuORF	REV__ENST00000396987.7_1_8:41478885-41479125:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8091430664062	2	557.246003	1112.47745	0.14778	8.2351E-05	-0.12403	-6.9115E-05	0.023751	1.3235E-05	557.2458303486319	80.749	0.45281	80.814	80.546	80.999	0.065094					30	18	2	0	0	0	0.25526	1	20911	20911		7.9102	3.1541	1	182780	+		57976	20662	33222	33223	70960	70960					-0.07428618558401467
YFDLGENQQ	9	Unmodified	_YFDLGENQQ_					0	0	0			REV__ENST00000396987.7_1_8:41478885-41479125:+|nuORF	REV__ENST00000396987.7_1_8:41478885-41479125:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	557.246003	1112.47745	0.28506	0.00015885	-0.25165	-0.00014023	0.03342	1.8623E-05	557.2458679317735	80.865	0.347	80.865	80.599	80.946	0	0.024713	-2.7216E-05	NaN	7.9102	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211480	+		57977	20662	33222	33223							-0.07428618558401467
YFDNDRNRR	9	Unmodified	_YFDNDRNRR_					0	0	0		nc|ENSG00000157965|Q7RTT4|SSX8P	nc|ENSG00000157965|Q7RTT4|SSX8P	nc|ENSG00000157965|Q7RTT4|SSX8P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.3013916015625	2	628.299967	1254.58538	1.0328	0.00064894	1.6015	0.0010062	2.6344	0.0016552	628.3010735338353	56.127	0.6362	56.127	55.787	56.423	0					57	22	3	0	0	0	0.33018	1	13412	13412		4.3292	0.73274	1	1966700			57978	12780	33223	33224	70961	70961					-0.03172809184457037
YFDPTLTLF	9	Unmodified	_YFDPTLTLF_					0	0	0		ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENST00000505306.5_1_17:48154319-48165696:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.783935546875	2	558.784233	1115.55391	0.26821	0.00014987	-0.11749	-6.5654E-05	0.15072	8.4219E-05	558.7843050532931	91.828	0.99119	91.828	91.527	92.518	0					128	70	3	0	0	0	0.14076	1	24363	24363		32.305	3.8186	1	359890			57979	11312	33224	33225	70962	70962					0.0007580500889616815
YFDPTLTLF	9	Unmodified	_YFDPTLTLF_					0	0	0		ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENST00000505306.5_1_17:48154319-48165696:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.7855834960938	2	558.784233	1115.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.912	1	87.912	87.412	88.412	0								0	0	0	0.2362	1	23200	23200		10.824	0.75	1				57980	11312	33224	33225	70963	70963					0.0007580500889616815
YFDPTLTLF	9	Unmodified	_YFDPTLTLF_					0	0	0		ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENST00000505306.5_1_17:48154319-48165696:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.8023071289062	2	558.784233	1115.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.038	1	94.038	93.538	94.538	0								0	0	0	0.22065	1	25067	25067		15.847	1.2655	1				57981	11312	33224	33225	70964	70964					0.0007580500889616815
YFDPTLTLF	9	Unmodified	_YFDPTLTLF_					0	0	0		ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENST00000505306.5_1_17:48154319-48165696:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	558.8021240234375	2	558.784233	1115.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.92	1	94.007	93.507	94.507	0.08667								0	0	0	0.22065	1	25030	25030		15.847	1.0089	1				57982	11312	33224	33225	70965	70965					0.0007580500889616815
YFDPTLTLF	9	Unmodified	_YFDPTLTLF_					0	0	0		ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENST00000505306.5_1_17:48154319-48165696:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.7844848632812	2	558.784233	1115.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.988	1	87.985	87.485	88.485	-0.0028381								0	0	0	0.20639	1	23210	23210		20.454	1.1966	1				57983	11312	33224	33225	70966	70966					0.0007580500889616815
YFDRLQGF	8	Unmodified	_YFDRLQGF_					0	0	0			REV__nc|ENSG00000109534|Q9NY12-2|GAR1	REV__nc|ENSG00000109534|Q9NY12-2|GAR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2589111328125	2	523.258717	1044.50288	0.45436	0.00023775	-0.12992	-6.7984E-05	0.32443	0.00016976	523.2586193029987	44.041	1.493	44.041	43.576	45.069	0					142	54	4	0	0	0	0.27124	1	9776	9776		34.102	0	1	5397000	+		57984	14643	33225	33226	70967	70967					-0.01759099245282414
YFDYLGRVQN	10	Unmodified	_YFDYLGRVQN_					0	0	0			REV__nc|ENSG00000165516|Q9Y2U9-2|KLHDC2	REV__nc|ENSG00000165516|Q9Y2U9-2|KLHDC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.93304443359375	3	425.543655	1273.60914	0.15271	6.4984E-05	-0.39204	-0.00016683	-0.23934	-0.00010185	425.5434028592746	85.683	2.0855	85.674	84.965	87.05	-0.0090027					156	80	3	0	0	0	0.32148	1	22477	22477		1.4551	0.38366	1	202400	+		57985	17242	33226	33227	70968	70968					-0.016723884706152603
YFEESFKAYE	10	Unmodified	_YFEESFKAYE_					0	0	0		ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.1955261230469	3	438.195921	1311.56593	-0.044072	-1.9312E-05	0.11572	5.0707E-05	0.071645	3.1394E-05	438.19602397238543	27.095	0.56997	27.095	26.871	27.441	0					25	19	2	0	0	0	0.40756	1	4580	4580		2.086	0.63089	1	55059			57986	1072	33227	33228	70969	70969					-0.07738623038540027
YFEESFKAYE	10	Unmodified	_YFEESFKAYE_					0	0	0		ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	438.195921	1311.56593	-0.044072	-1.9312E-05	0.11572	5.0707E-05	0.071645	3.1394E-05	438.19602397238543	27.095	0.56997	27.095	26.871	27.441	0	-0.04539	-0.00012384	NaN	2.086	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55059			57987	1072	33227	33228							-0.07738623038540027
YFEESFKAYE	10	Unmodified	_YFEESFKAYE_					0	0	0		ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	438.195921	1311.56593	0.00059386	2.6023E-07	0.42369	0.00018566	0.42428	0.00018592	438.5302908699335	27.198	0.47015	27.186	26.904	27.374	-0.01156	0.04539	0.00028102	NaN	2.086	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55269			57988	1072	33227	33228							-0.07738623038540027
YFEKSKEQL	9	Unmodified	_YFEKSKEQL_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.834228515625	2	586.303321	1170.59209	0.37137	0.00021774	-0.25522	-0.00014964	0.11615	6.8098E-05	586.3029426633615	82.201	0.85296	82.201	81.53	82.383	0					76	32	3	0	0	0	0.25431	1	21308	21308		9.3831	1.473	1	544130			57989	5380	33228	33229	70970	70970					0.013616909235679486
YFEKSKEQL	9	Unmodified	_YFEKSKEQL_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	586.303321	1170.59209	0.25712	0.00015075	-0.22243	-0.00013041	0.034688	2.0337E-05	586.3029325500104	82.048	2.356	82.117	81.461	83.817	0.068993	-0.079264	0.00013739	NaN	9.3831	182	96	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	668550			57990	5380	33228	33229							0.013616909235679486
YFEKSKEQL	9	Unmodified	_YFEKSKEQL_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	586.303321	1170.59209	0.46287	0.00027138	-0.49647	-0.00029108	-0.033601	-1.97E-05	586.302777822696	82.29	2.2849	82.269	81.567	83.852	-0.020607	0.07362	-0.00018395	NaN	9.3831	170	93	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	570360			57991	5380	33228	33229							0.013616909235679486
YFEYIQSL	8	Unmodified	_YFEYIQSL_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8248901367188	2	531.760758	1061.50696	0.49893	0.00026531	-2.6185	-0.0013924	-2.1196	-0.0011271	531.7604961076391	39.856	0.42709	39.949	39.662	40.09	0.09267					18	14	2	0	0	0	0.34185	1	8363	8363		10.183	1.5901	1	165780			57992	3175	33229	33230	70971	70971					-0.021330545422415526
YFFERQEELG	10	Unmodified	_YFFERQEELG_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.875244140625	3	439.875182	1316.60372	0.31001	0.00013636	0.049112	2.1603E-05	0.35912	0.00015797	439.8753370241611	50.248	1.2749	50.248	49.923	51.198	0					157	46	5	0	0	0	0.35267	1	11596	11596		12.175	2.4105	1	3433200			57993	3873	33230	33231	70972	70972					-0.04192112053101482
YFFERQEELG	10	Unmodified	_YFFERQEELG_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.87530517578125	3	439.875182	1316.60372	0.57461	0.00025276	-0.037592	-1.6536E-05	0.53702	0.00023622	439.8752188894142	50.212	1.442	50.256	49.932	51.373	0.044891					165	53	5	0	0	0	0.35267	1	11592	11592		12.175	3.423	1	4308500			57994	3873	33230	33231	70973	70973					-0.04192112053101482
YFFERQEELG	10	Unmodified	_YFFERQEELG_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.875244140625	3	439.875182	1316.60372	0.66235	0.00029135	-0.23458	-0.00010319	0.42777	0.00018817	439.8751886794471	50.253	1.395	50.274	49.989	51.384	0.020695					162	52	5	0	0	0	0.35267	1	11605	11605		12.175	12.175	1	3809100			57995	3873	33230	33231	70974	70974					-0.04192112053101482
YFFERQEELG	10	Unmodified	_YFFERQEELG_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	439.875182	1316.60372	0.31001	0.00013636	0.049112	2.1603E-05	0.35912	0.00015797	439.8753370241611	50.248	1.2749	50.248	49.923	51.198	0	-0.011729	0.00017899	NaN	12.175	157	46	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3433200			57996	3873	33230	33231							-0.04192112053101482
YFFERQEELG	10	Unmodified	_YFFERQEELG_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	439.875182	1316.60372	0.57461	0.00025276	-0.037592	-1.6536E-05	0.53702	0.00023622	439.8752188894142	50.212	1.442	50.256	49.932	51.373	0.044891	-0.0030175	6.4572E-05	NaN	12.175	165	53	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4308500			57997	3873	33230	33231							-0.04192112053101482
YFFERQEELG	10	Unmodified	_YFFERQEELG_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	439.875182	1316.60372	0.66235	0.00029135	-0.23458	-0.00010319	0.42777	0.00018817	439.8751886794471	50.253	1.395	50.274	49.989	51.384	0.020695	0.014746	-0.00019538	NaN	12.175	162	52	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3809100			57998	3873	33230	33231							-0.04192112053101482
YFFGQNMKY	9	Unmodified	_YFFGQNMKY_					0	0	0		ENST00000313334.12_1_1:52552599-52552851:+|nuORF	ENST00000313334.12_1_1:52552599-52552851:+|nuORF	ENST00000313334.12_1_1:52552599-52552851:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.8099975585938	2	599.273509	1196.53247	0.46795	0.00028043	1.1547	0.00069196	1.6226	0.00097239	599.2743301395835	66.853	0.7663	66.853	66.659	67.425	0					55	26	3	0	0	0	0.24913	1	16817	16817		12.532	1.4171	1	241590			57999	9329	33231	33232	70975	70975					-0.05793903291441893
YFFGQNMKY	9	Unmodified	_YFFGQNMKY_					0	0	0		ENST00000313334.12_1_1:52552599-52552851:+|nuORF	ENST00000313334.12_1_1:52552599-52552851:+|nuORF	ENST00000313334.12_1_1:52552599-52552851:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.81005859375	2	599.273509	1196.53247	0.20318	0.00012176	1.6128	0.00096653	1.816	0.0010883	599.2746283715209	66.98	0.98489	66.967	66.69	67.674	-0.013596					53	34	3	0	0	0	0.24913	1	16803	16803		12.532	1.4171	1	225100			58000	9329	33231	33232	70976	70976					-0.05793903291441893
YFFLFMSLY	9	Unmodified	_YFFLFMSLY_					0	0	0			REV__ENST00000295770.3_1_3:31677873-31677942:+|nuORF	REV__ENST00000295770.3_1_3:31677873-31677942:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	615.7985229492188	2	615.798829	1229.5831	0.45036	0.00027733	-0.31801	-0.00019583	0.13235	8.1503E-05	615.7985488490766	84.041	2.8501	84.041	82.813	85.663	0					183	110	3	0	0	0	0.30166	1	21904	21904		8.5933	3.3626	1	701430	+		58001	19782	33232	33233	70977	70977					-0.022503739664443856
YFFLFMSLY	9	Unmodified	_YFFLFMSLY_					0	0	0			REV__ENST00000295770.3_1_3:31677873-31677942:+|nuORF	REV__ENST00000295770.3_1_3:31677873-31677942:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	615.798829	1229.5831	0.45036	0.00027733	-0.31801	-0.00019583	0.13235	8.1503E-05	615.7985488490766	84.041	2.8501	84.041	82.813	85.663	0	0.025018	-4.9236E-05	NaN	8.5933	183	110	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	701430	+		58002	19782	33232	33233							-0.022503739664443856
YFFLFMSLY	9	Unmodified	_YFFLFMSLY_					0	0	0			REV__ENST00000295770.3_1_3:31677873-31677942:+|nuORF	REV__ENST00000295770.3_1_3:31677873-31677942:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	615.798829	1229.5831	0.37038	0.00022808	-0.27237	-0.00016772	0.098012	6.0356E-05	615.7984726229924	83.942	2.7527	84.019	82.782	85.535	0.077095	0.0030198	6.9754E-06	NaN	8.5933	228	108	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	718940	+		58003	19782	33232	33233							-0.022503739664443856
YFFLFMSLY	9	Unmodified	_YFFLFMSLY_					0	0	0			REV__ENST00000295770.3_1_3:31677873-31677942:+|nuORF	REV__ENST00000295770.3_1_3:31677873-31677942:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	615.798829	1229.5831	0.42638	0.00026256	-0.245	-0.00015087	0.18138	0.0001117	615.7984801320667	84.005	2.2303	83.988	83.246	85.476	-0.01683	-0.028038	4.0686E-05	NaN	8.5933	211	93	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	742450	+		58004	19782	33232	33233							-0.022503739664443856
YFFLTHLSL	9	Unmodified	_YFFLTHLSL_					0	0	0		ENSG00000221954|ENST00000335238|OR4C12	ENSG00000221954|ENST00000335238|OR4C12	ENSG00000221954|ENST00000335238|OR4C12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.78955078125	2	570.808042	1139.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.256	1	78.225	77.725	78.725	-0.030434								0	0	0	0.20238	1	20222	20222		21.747	1.3321	1				58005	8427	33233	33234	70978	70978					0.03731503999756569
YFFVRRSEEDW	11	Unmodified	_YFFVRRSEEDW_					0	0	0			REV__nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	REV__nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.9088439941406	3	511.908886	1532.70483	0.22844	0.00011694	-0.51971	-0.00026604	-0.29127	-0.0001491	512.2429690659078	31.562	1.0433	31.603	31.334	32.377	0.040991					75	36	5	0	0	0	0.47633	1	5942	5942		1.2148	0.20126	1	3058500	+		58006	16845	33234	33235	70979	70979					-0.040216603503949955
YFFYLIMNSL	10	Unmodified	_YFFYLIMNSL_					0	0	0			REV__nc|ENSG00000145246|Q9P241-2|ATP10D	REV__nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.5553894042969	3	437.554504	1309.64168	-0.27095	-0.00011855	1.9888	0.00087019	1.7178	0.00075164	437.55543223091036	28.042	0.56663	28.038	27.793	28.359	-0.0042572					41	19	3	0	0	0	0.37297	1	4841	4841		8.4443	1.4072	1	106940	+		58007	16286	33235	33236	70980	70980					-0.0007531739197474963
YFGIGAVL	8	Unmodified	_YFGIGAVL_					0	0	0			REV__ENSG00000198952|ENST00000361813|SMG5	REV__ENSG00000198952|ENST00000361813|SMG5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.2369689941406	2	420.236722	838.45889	0.084379	3.5459E-05	1.516	0.00063707	1.6004	0.00067253	420.23706053305494	91.164	0.36522	91.254	91.11	91.476	0.090675					57	26	3	0	0	0	0.45851	1	24201	24201		2.8892	0	1	440230	+		58008	18900	33236	33237	70981	70981					0.03319916328382533
YFGIGAVL	8	Unmodified	_YFGIGAVL_					0	0	0			REV__ENSG00000198952|ENST00000361813|SMG5	REV__ENSG00000198952|ENST00000361813|SMG5	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	420.236722	838.45889	0.084379	3.5459E-05	1.516	0.00063707	1.6004	0.00067253	420.23706053305494	91.164	0.36522	91.254	91.11	91.476	0.090675	-0.011527	0.00035643	NaN	2.8892	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440230	+		58009	18900	33236	33237							0.03319916328382533
YFGIGAVL	8	Unmodified	_YFGIGAVL_					0	0	0			REV__ENSG00000198952|ENST00000361813|SMG5	REV__ENSG00000198952|ENST00000361813|SMG5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	420.236722	838.45889	0.23956	0.00010067	0.9337	0.00039238	1.1733	0.00049305	420.2369879082971	91.277	0.4512	91.277	91.082	91.533	0.00046539	0.011527	-0.00013296	NaN	2.8892	50	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495610	+		58010	18900	33236	33237							0.03319916328382533
YFGKESLW	8	Unmodified	_YFGKESLW_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7897338867188	2	515.255643	1028.49673	0.14018	7.2227E-05	3.6329	0.0018719	3.773	0.0019441	515.2572996451036	41.282	0.55957	41.282	40.822	41.382	0					24	20	2	0	0	0	0.31375	1	8887	8887		19.439	2.4967	1	143380			58011	4248	33237	33238	70982	70982					-0.016376174768311103
YFGKESLW	8	Unmodified	_YFGKESLW_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7898559570312	2	515.255643	1028.49673	0.25139	0.00012953	2.8155	0.0014507	3.0669	0.0015802	515.2571288974412	41.08	0.74133	41.17	40.609	41.35	0.090252					35	27	2	0	0	0	0.32778	1	8777	8777		20.871	0	1	157100			58012	4248	33237	33238	70983	70983					-0.016376174768311103
YFGLATDGPVV	11	Unmodified	_YFGLATDGPVV_					0	0	0			REV__ENST00000489116.1_1_6:28415047-28415581:+|nuORF	REV__ENST00000489116.1_1_6:28415047-28415581:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.2560424804688	2	569.792589	1137.57063	0.16	9.1164E-05	-2.096	-0.0011943	-1.936	-0.0011031	570.2923265706385	92.98	0.059769	92.98	92.941	93.001	0					6	4	2	0	0	0	0.33085	1	24741	24741		6.2058	0.97511	1	88251	+		58013	21585	33238	33239	70984	70984					0.00734305894843601
YFHLILQF	8	Unmodified	_YFHLILQF_					0	0	0		ENST00000182527.3_1_6:52367444-52367987:-|nuORF	ENST00000182527.3_1_6:52367444-52367987:-|nuORF	ENST00000182527.3_1_6:52367444-52367987:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.3004150390625	2	540.797478	1079.5804	0.71212	0.00038511	1.3972	0.00075561	2.1093	0.0011407	541.3006274822164	91.374	1.0572	91.375	91.185	92.242	0.00046539					132	68	4	0	0	0	0.4397	1	24358	24358		9.3474	0.75416	1	252290			58014	8792	33239	33240	70985	70985					0.04379538690886875
YFIAYLAF	8	Unmodified	_YFIAYLAF_					0	0	0		ENST00000497660.5_1_1:8390216-8404070:+|nuORF;ENSG00000162426|ENST00000471889|SLC45A1	ENST00000497660.5_1_1:8390216-8404070:+|nuORF	ENST00000497660.5_1_1:8390216-8404070:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.277099609375	2	504.265479	1006.51641	0.77126	0.00038892	-4.4455	-0.0022417	-3.6743	-0.0018528	504.26279339580276	50.11	0.39933	50.13	50.038	50.437	0.020691					26	14	3	0	0	0	0.35781	1	11617	11617		24.21	1.7573	1	146640			58015	5570	33240	33241	70986	70986					0.013407585339336947
YFIAYLAF	8	Unmodified	_YFIAYLAF_					0	0	0		ENST00000497660.5_1_1:8390216-8404070:+|nuORF;ENSG00000162426|ENST00000471889|SLC45A1	ENST00000497660.5_1_1:8390216-8404070:+|nuORF	ENST00000497660.5_1_1:8390216-8404070:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	504.265479	1006.51641	0.42332	0.00021346	-4.3458	-0.0021915	-3.9225	-0.001978	504.26302127449003	50.121	0.5913	50.121	49.953	50.544	0	-0.0045883	4.2443E-05	NaN	24.21	28	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138410			58016	5570	33240	33241							0.013407585339336947
YFICQRMLC	9	Unmodified	_YFICQRMLC_					0	0	0		ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3185424804688	2	588.771765	1175.52898	0.49801	0.00029322	2.4797	0.00146	2.9777	0.0017532	588.7739676186858	72.182	0.62642	72.239	72.005	72.632	0.056572					52	22	4	0	0	0	0.23783	1	18491	18491		18.135	2.2878	1	414090			58017	915	33241	33242	70987	70987					-0.05176612661307445
YFIFWTAY	8	Unmodified	_YFIFWTAY_					0	0	0			REV__ENST00000490508.5_1_2:85582684-85582789:+|nuORF	REV__ENST00000490508.5_1_2:85582684-85582789:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.31103515625	2	555.768386	1109.52222	0.18927	0.00010519	-3.0577	-0.0016994	-2.8685	-0.0015942	555.7668570969707	62.95	0.38663	62.941	62.778	63.165	-0.0085564					19	13	2	0	0	0	0.32778	1	15617	15617		20.871	6.2895	1	256370	+		58018	21601	33242	33243	70988	70988					-0.028161429543843042
YFIIWIVQQ	9	Unmodified	_YFIIWIVQQ_					0	0	0			REV__ENST00000373852.9_1_20:35238143-35240451:+|nuORF	REV__ENST00000373852.9_1_20:35238143-35240451:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.57025146484375	3	403.893737	1208.65938	0.040912	1.6524E-05	2.6391	0.0010659	2.68	0.0010824	403.89503716028986	20.912	0.51849	20.912	20.65	21.169	0					28	17	2	0	0	0	0.26127	1	2610	2610		2.7352	0.82882	1	34103	+		58019	20454	33243	33244	70989	70989					0.0633976592516774
YFIIWIVQQ	9	Unmodified	_YFIIWIVQQ_					0	0	0			REV__ENST00000373852.9_1_20:35238143-35240451:+|nuORF	REV__ENST00000373852.9_1_20:35238143-35240451:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	403.893737	1208.65938	0.024526	9.9059E-06	2.285	0.00092289	2.3095	0.0009328	403.89498176838475	21.018	0.58907	20.965	20.723	21.312	-0.05291	0.026551	-0.00030011	NaN	2.7352	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48232	+		58020	20454	33243	33244							0.0633976592516774
YFISHILAF	9	Unmodified	_YFISHILAF_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.8031616210938	2	555.80276	1109.59097	0.27312	0.0001518	0.96254	0.00053498	1.2357	0.00068678	555.8033014545307	76.502	0.52266	76.502	76.31	76.833	0					32	18	2	0	0	0	0.037693	1	19720	19720		57.471	6.6163	1	348970			58021	641	33244	33245	70990	70990					0.04055521345321722
YFISHILAF	9	Unmodified	_YFISHILAF_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.8028564453125	2	555.80276	1109.59097	0.13509	7.5085E-05	0.77769	0.00043224	0.91278	0.00050733	555.8030500088814	76.479	0.70103	76.533	76.189	76.89	0.053413					63	24	3	0	0	0	0.037693	1	19692	19692		57.471	6.6163	1	349380			58022	641	33244	33245	70991	70991					0.04055521345321722
YFISPVANSS	10	Unmodified	_YFISPVANSS_					0	0	0		ENST00000520983.5_1_8:28651295-28747426:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9;nc|ENSG00000104299|Q9NV88-2|INTS9	ENST00000520983.5_1_8:28651295-28747426:-|nuORF	ENST00000520983.5_1_8:28651295-28747426:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.778076171875	2	542.769114	1083.52368	0.28702	0.00015579	0.96573	0.00052417	1.2528	0.00067996	543.2703342062191	14.775	0.39851	14.67	14.453	14.852	-0.10541					34	13	4	0	0	0	0.32033	1	788	788		3.5965	0	1	67638			58023	1876	33245	33246	70992	70992					-0.014745536562941197
YFISTYIDF	9	Unmodified	_YFISTYIDF_					0	0	0		nc|ENSG00000133863|Q9BXT5|TEX15;ENSG00000133863|ENST00000643185|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3143920898438	2	584.78169	1167.54883	0.36088	0.00021104	0.85062	0.00049743	1.2115	0.00070846	585.2854852665466	73.426	0.16019	73.397	73.315	73.476	-0.029297					7	5	2	0	0	0	0.23147	1	18753	18753		19.439	5.5329	1	66021			58024	3735	33246	33247	70993	70993					-0.028244988537380777
YFKDTHPKF	9	Unmodified	_YFKDTHPKF_					0	0	0		ENST00000470741.1_1_22:43015781-43027088:-|nuORF;nc|ENSG00000100243|P00387-2|CYB5R3;ENSG00000100243|ENST00000352397|CYB5R3;nc|ENSG00000100243|P00387-3|CYB5R3	ENST00000470741.1_1_22:43015781-43027088:-|nuORF	ENST00000470741.1_1_22:43015781-43027088:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.322021484375	2	591.800749	1181.58694	0.10284	6.0861E-05	0.19631	0.00011618	0.29915	0.00017704	591.8007261346712	27.595	0.39393	27.574	27.411	27.805	-0.021412					16	13	2	0	0	0	0.23216	1	4694	4694		22.658	15.369	1	90516			58025	1552	33247	33248	70994	70994					0.003414318515751802
YFKDTHPKF	9	Unmodified	_YFKDTHPKF_					0	0	0		ENST00000470741.1_1_22:43015781-43027088:-|nuORF;nc|ENSG00000100243|P00387-2|CYB5R3;ENSG00000100243|ENST00000352397|CYB5R3;nc|ENSG00000100243|P00387-3|CYB5R3	ENST00000470741.1_1_22:43015781-43027088:-|nuORF	ENST00000470741.1_1_22:43015781-43027088:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	591.800749	1181.58694	0.17135	0.0001014	-0.10703	-6.334E-05	0.06432	3.8065E-05	591.8007700043356	27.605	0.36625	27.605	27.474	27.84	0	0.01544	-9.5176E-05	NaN	22.658	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71178			58026	1552	33247	33248							0.003414318515751802
YFKRKMRKI	9	Unmodified	_YFKRKMRKI_					0	0	0			REV__nc|ENSG00000111837|P20794-3|MAK	REV__nc|ENSG00000111837|P20794-3|MAK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	635.3846435546875	2	635.38426	1268.75397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.83	1	96.901	96.401	97.401	0.070465								0	0	0	0.2672	1	25895	25895		0.52476	0.066424	1		+		58027	14741	33248	33249	70995	70995					0.1303400119552407
YFKRYQVKF	9	Unmodified	_YFKRYQVKF_					0	0	0		ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.9046936035156	3	426.904636	1277.69208	0.042823	1.8282E-05	-0.23638	-0.00010091	-0.19355	-8.2628E-05	426.90451899514665	36.438	0.64726	36.438	36.282	36.93	0					47	22	3	0	0	0	0.22215	1	7418	7418		20.415	4.2654	1	554120			58028	3041	33249	33250	70996	70996					0.064339730480242
YFKSWWDVI	9	Unmodified	_YFKSWWDVI_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.7784423828125	2	622.310949	1242.60735	0.5409	0.00033661	-1.107	-0.00068892	-0.56614	-0.00035231	622.3102382914833	54.995	0.84147	54.979	54.451	55.293	-0.015923					56	30	3	0	0	0	0.26031	1	12935	12935		3.5965	0.31518	1	581840	+		58029	23008	33250	33251	70997	70997					-0.0042539748858416715
YFKSWWDVI	9	Unmodified	_YFKSWWDVI_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	622.310949	1242.60735	0.65486	0.00040753	-1.0472	-0.00065166	-0.3923	-0.00024413	622.3100681458268	54.761	0.70614	54.761	54.268	54.974	0	-0.061128	6.5744E-06	NaN	3.5965	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356430	+		58030	23008	33250	33251							-0.0042539748858416715
YFKSWWDVI	9	Unmodified	_YFKSWWDVI_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	622.310949	1242.60735	0.36402	0.00022653	-0.98477	-0.00061283	-0.62075	-0.0003863	622.3101793103414	54.663	0.69109	54.726	54.272	54.963	0.063202	-0.095917	8.422E-05	NaN	3.5965	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350600	+		58031	23008	33250	33251							-0.0042539748858416715
YFLAWALI	8	Unmodified	_YFLAWALI_					0	0	0			REV__SLC6A12|p.V232Sfs*17|1|0.34|ENSG00000111181|chr12:200668-200668|C/-|frameshift_variant	REV__SLC6A12|p.V232Sfs*17|1|0.34|ENSG00000111181|chr12:200668-200668|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7818908691406	2	498.781296	995.54804	0.28571	0.00014251	1.0007	0.00049915	1.2864	0.00064165	498.7817315951395	74.054	1.7516	74.106	72.654	74.405	0.052361					106	62	3	0	0	0	0.44842	1	18902	18902		6.3541	0	1	562520	+		58032	14706	33251	33252	70998	70998					0.05008751287891755
YFLIDRSVLF	10	Unmodified	_YFLIDRSVLF_					0	0	0			REV__ENST00000377091.6_1_10:21827773-21845868:+|nuORF	REV__ENST00000377091.6_1_10:21827773-21845868:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.8532104492188	2	636.852981	1271.69141	0.31205	0.00019873	0.071673	4.5645E-05	0.38372	0.00024437	636.8529681744616	70.039	0.90272	70.039	69.703	70.605	0					70	32	3	0	0	0	0.3001	1	17838	17838		20.415	3.3016	1	704250	+		58033	20499	33252	33253	70999	70999					0.06643133608326934
YFLIRAFR	8	Unmodified	_YFLIRAFR_					0	0	0		ENSG00000228300|ENST00000409293|FAM174C	ENSG00000228300|ENST00000409293|FAM174C	ENSG00000228300|ENST00000409293|FAM174C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.25634765625	2	543.316369	1084.61818	0.16093	8.7434E-05	2.2099	0.0012007	2.3708	0.0012881	543.3175718800505	14.334	0.17428	14.334	14.221	14.395	0					9	5	2	0	0	0	0.34434	1	704	704		0.79363	0	1	17349			58034	8459	33253	33254	71000	71000					0.07926049676370894
YFLIRAFR	8	Unmodified	_YFLIRAFR_					0	0	0		ENSG00000228300|ENST00000409293|FAM174C	ENSG00000228300|ENST00000409293|FAM174C	ENSG00000228300|ENST00000409293|FAM174C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.8355712890625	2	543.316369	1084.61818	0.2498	0.00013572	1.951	0.00106	2.2008	0.0011957	543.3176026529659	14.455	0.24214	14.351	14.212	14.454	-0.10466					12	7	2	0	0	0	0.34434	1	701	701		0.79363	0.79363	1	15404			58035	8459	33253	33254	71001	71001					0.07926049676370894
YFLIRAFR	8	Unmodified	_YFLIRAFR_					0	0	0		ENSG00000228300|ENST00000409293|FAM174C	ENSG00000228300|ENST00000409293|FAM174C	ENSG00000228300|ENST00000409293|FAM174C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.316369	1084.61818	0.25042	0.00013606	2.1515	0.0011689	2.4019	0.001305	543.3176512133632	14.453	0.27672	14.387	14.206	14.483	-0.066068	0.029431	0.00013394	NaN	0.79363	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19978			58036	8459	33253	33254							0.07926049676370894
YFLKGVLVF	9	Unmodified	_YFLKGVLVF_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8078002929688	2	543.323328	1084.6321	0.36369	0.0001976	-0.87179	-0.00047366	-0.5081	-0.00027606	543.3226191765878	76.326	0.55193	76.326	76.141	76.693	0					34	19	2	0	0	0	0.20651	1	19679	19679		26.884	14.352	1	293530			58037	552	33254	33255	71002	71002					0.09317282384790815
YFLKGVLVF	9	Unmodified	_YFLKGVLVF_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.80712890625	2	543.323328	1084.6321	0.37927	0.00020606	-0.17552	-9.5365E-05	0.20374	0.0001107	543.3229903183606	76.302	0.53047	76.356	76.135	76.665	0.053413					29	18	2	0	0	0	0.17611	1	19622	19622		34.102	21.571	1	248150			58038	552	33254	33255	71003	71003					0.09317282384790815
YFLKGVLVF	9	Unmodified	_YFLKGVLVF_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8080444335938	2	543.323328	1084.6321	0.67402	0.00036621	-0.6285	-0.00034148	0.045522	2.4733E-05	543.3228791148699	76.404	0.51974	76.373	76.163	76.682	-0.031487					27	18	2	0	0	0	0.17611	1	19676	19676		34.102	21.571	1	319730			58039	552	33254	33255	71004	71004					0.09317282384790815
YFLKWKGF	8	Unmodified	_YFLKWKGF_					0	0	0		ENSG00000122565|ENST00000396386|CBX3;ENST00000325243.6_1_11:27828081-27828540:+|nuORF	ENSG00000122565|ENST00000396386|CBX3	ENSG00000122565|ENST00000396386|CBX3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7924194335938	2	544.80002	1087.58549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.979	1	69.979	69.479	70.479	0								0	0	0	0.31676	1	17712	17712		26.341	16.158	1				58040	3052	33255	33256	71005	71005					0.04519842553509079
YFLLLPQF	8	Unmodified	_YFLLLPQF_					0	0	0			REV__ENSG00000145390|ENST00000692078|USP53	REV__ENSG00000145390|ENST00000692078|USP53	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.7947387695312	2	520.794404	1039.57425	0.53517	0.00027871	0.51889	0.00027024	1.0541	0.00054895	520.7945450681021	76.356	3.3211	76.325	75.184	78.505	-0.031487					196	122	3	0	0	0	0.44842	1	19589	19589		6.3541	1.5981	1	1007500	+		58041	16291	33256	33257	71006	71006					0.0560502045937028
YFLLSFGPS	9	Unmodified	_YFLLSFGPS_					0	0	0			REV__nc|ENSG00000174227|Q5H8A4-2|PIGG	REV__nc|ENSG00000174227|Q5H8A4-2|PIGG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.7673950195312	2	515.765843	1029.51713	0.022285	1.1494E-05	2.8341	0.0014617	2.8564	0.0014732	515.7673290476454	14.328	0.5358	14.328	14.113	14.649	0					24	18	2	0	0	0	0.34681	1	715	715		1.8442	0	1	76319	+		58042	17819	33257	33258	71007	71007					0.0035555318299884675
YFLLSHLAF	9	Unmodified	_YFLLSHLAF_					0	0	0		ENSG00000186509|ENST00000335397|OR9Q1	ENSG00000186509|ENST00000335397|OR9Q1	ENSG00000186509|ENST00000335397|OR9Q1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.803466796875	2	555.80276	1109.59097	0.39881	0.00022166	0.89914	0.00049974	1.2979	0.0007214	555.803142275185	76.529	0.48279	76.497	76.346	76.828	-0.031487					33	17	2	0	0	0	0.055495	1	19724	19724		50.855	0	1	321530			58043	7623	33258	33259	71008	71008					0.04055521345321722
YFLLTEPP	8	Unmodified	_YFLLTEPP_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3;ENST00000489779.1_1_2:114684960-114691984:+|nuORF	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.779541015625	2	490.260394	978.506234	0.11069	5.4267E-05	-0.34472	-0.000169	-0.23403	-0.00011474	490.2601601596861	22.415	0.48492	22.37	22.069	22.553	-0.044865					26	16	2	0	0	0	0.34408	1	3062	3062		2.3027	0	1	71241			58044	2606	33259	33260	71009	71009					0.01612150808705337
YFLMIHVLLIL	11	Unmodified	_YFLMIHVLLIL_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.5703125	3	458.945444	1373.8145	0.33294	0.0001528	2.4672	0.0011323	2.8002	0.0012851	458.9464833421459	47.732	0.49565	47.732	47.302	47.797	0					18	17	2	0	0	0	0.33182	1	10856	10856		5.4027	1.5568	1	181580			58045	6706	33260	33261	71010	71010					0.1425467373524043
YFLNSKDAFV	10	Unmodified	_YFLNSKDAFV_					0	0	0		ENSG00000268089|ENST00000598523|GABRQ	ENSG00000268089|ENST00000598523|GABRQ	ENSG00000268089|ENST00000598523|GABRQ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.3241577148438	2	602.305864	1202.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.192	1	69.264	68.764	69.764	0.071938								0	0	0	0.35216	1	17468	17468		13.906	3.0821	1				58046	8684	33261	33262	71011	71011					0.003979947861580513
YFLNTNNAF	9	Unmodified	_YFLNTNNAF_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2618408203125	2	552.261456	1102.50836	0.36888	0.00020372	0.52333	0.00028902	0.89222	0.00049274	552.2615167134879	66.834	0.64948	66.834	66.573	67.222	0					64	22	4	0	0	0	0.00014042	2	16733	16733;16783		134.3	108.9	1	857030			58047	1455	33262	33263	71012;71013	71012					-0.03879420453495186
YFLNTNNAF	9	Unmodified	_YFLNTNNAF_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2614135742188	2	552.261456	1102.50836	0.38457	0.00021238	0.11279	6.2288E-05	0.49736	0.00027467	552.2613993609951	66.734	0.6114	66.818	66.544	67.156	0.083832					57	21	3	0	0	0	8.4618E-08	2	16719	16719;16785		176.84	129.92	1	820990			58048	1455	33262	33263	71014;71015	71014					-0.03879420453495186
YFLNTNNAF	9	Unmodified	_YFLNTNNAF_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2619018554688	2	552.261456	1102.50836	0.18096	9.9939E-05	0.44538	0.00024597	0.62635	0.00034591	552.2616349612806	66.847	0.67415	66.834	66.539	67.213	-0.013588					60	23	3	0	0	0	0.00070271	2	16722	16722;16822		126.57	126.57	1	796210			58049	1455	33262	33263	71016;71017	71016					-0.03879420453495186
YFLQLKEFV	9	Unmodified	_YFLQLKEFV_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.827880859375	2	593.828975	1185.6434	0.32261	0.00019157	-0.043554	-2.5864E-05	0.27905	0.00016571	593.8296090304597	76.177	6.2714	76.231	75.782	82.053	0.053413					524	250	3	0	0	0	0.27532	1	21121	21121		12.532	3.1484	1	87613000	+		58050	16188	33263	33264	71018	71018					0.05800059688249348
YFLSPTFF	8	Unmodified	_YFLSPTFF_					0	0	0		ENST00000367128.7_1_1:206154210-206154282:+|nuORF	ENST00000367128.7_1_1:206154210-206154282:+|nuORF	ENST00000367128.7_1_1:206154210-206154282:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.25408935546875	2	511.255111	1020.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.43	1	116.43	115.93	116.93	0								0	0	0	0.37724	1	30142	30142		2.3027	0	1				58051	9725	33264	33265	71019	71019					-0.013758318457234964
YFLSVVLLH	9	Unmodified	_YFLSVVLLH_					0	0	0			REV__ENSG00000170790|ENST00000641461|OR10A2	REV__ENSG00000170790|ENST00000641461|OR10A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.8179321289062	2	545.81841	1089.62227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.93	1	119.93	119.43	120.43	0								0	0	0	0.2672	1	30922	30922		0.52476	0	1		+		58052	17313	33265	33266	71020	71020					0.08104094379427806
YFLTRPEPH	9	Unmodified	_YFLTRPEPH_					0	0	0		ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	ENSG00000174206|ENST00000398055|KICS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8118896484375	2	580.298373	1158.58219	0.36676	0.00021283	-2.8222	-0.0016377	-2.4554	-0.0014249	580.7985905750326	17.06	0.34354	17	16.836	17.18	-0.060429					21	12	2	0	0	0	0.31417	1	1531	1531		6.7232	1.4263	1	40615			58053	6778	33266	33267	71021	71021					0.009245477088370535
YFLVENFF	8	Unmodified	_YFLVENFF_					0	0	0		ENST00000490698.5_1_4:75026043-75026154:+|nuORF	ENST00000490698.5_1_4:75026043-75026154:+|nuORF	ENST00000490698.5_1_4:75026043-75026154:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8184814453125	2	539.765843	1077.51713	0.34293	0.0001851	-2.233	-0.0012053	-1.8901	-0.0010202	539.7648131462023	93.919	0.3552	93.919	93.778	94.134	0					36	24	2	0	0	0	0.3366	1	25024	25024		18.135	2.3668	1	57311			58054	11163	33267	33268	71022	71022					-0.018524468170198816
YFLVENFF	8	Unmodified	_YFLVENFF_					0	0	0		ENST00000490698.5_1_4:75026043-75026154:+|nuORF	ENST00000490698.5_1_4:75026043-75026154:+|nuORF	ENST00000490698.5_1_4:75026043-75026154:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8184204101562	2	539.765843	1077.51713	0.39561	0.00021354	-1.5745	-0.00084985	-1.1789	-0.00063632	539.7650107028295	93.792	0.45529	93.878	93.672	94.127	0.08667					47	35	2	0	0	0	0.34046	1	24942	24942		14.582	4.3983	1	109510			58055	11163	33267	33268	71023	71023					-0.018524468170198816
YFLYRVVFH	9	Unmodified	_YFLYRVVFH_					0	0	0		ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.2944946289062	2	622.334759	1242.65496	-0.054401	-3.3856E-05	-3.7745	-0.002349	-3.8289	-0.0023828	622.3320811012809	69.793	0.30285	69.859	69.637	69.939	0.066048					15	10	2	0	0	0	0.25291	1	17665	17665		9.3474	4.1168	1	112170			58056	5121	33268	33269	71024	71024					0.04334301502285598
YFMNLYTFIL	10	Unmodified	_YFMNLYTFIL_					0	0	0			REV__nc|ENSG00000198965|Q8NGX6|OR10R2	REV__nc|ENSG00000198965|Q8NGX6|OR10R2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.7742004394531	3	442.226387	1323.65733	0.37193	0.00016448	-2.2577	-0.00099842	-1.8858	-0.00083394	442.2249568746379	51.248	0.13197	51.248	51.139	51.271	0					5	4	2	0	0	0	0.32051	1	11926	11926		3.8763	0.80407	1	46140	+		58057	23164	33269	33270	71025	71025					0.008449691250689284
YFMQRHQLL	9	Unmodified	_YFMQRHQLL_					0	0	0		ENSG00000065613|ENST00000369755|SLK;nc|ENSG00000065613|Q9H2G2-2|SLK;ENST00000474260.1_1_10:105768003-105778705:+|nuORF	ENSG00000065613|ENST00000369755|SLK	ENSG00000065613|ENST00000369755|SLK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.3428955078125	2	618.321325	1234.6281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.317	1	74.286	73.786	74.786	-0.030655								0	0	0	0.23091	1	19025	19025		12.532	0.89125	1				58058	820	33270	33271	71026	71026					0.02016869619433237
YFNEHQHA	8	Unmodified	_YFNEHQHA_					0	0	0			REV__ENST00000370629.6_1_X:135730352-135730547:+|nuORF	REV__ENST00000370629.6_1_X:135730352-135730547:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.8058471679688	2	523.227948	1044.44134	0.12916	6.7581E-05	-0.12176	-6.3711E-05	0.0073966	3.8701E-06	523.729628980918	14.515	0.10954	14.449	14.4	14.51	-0.066068					5	3	2	0	0	0	0.344	1	733	733		2.5775	0	1	12323	+		58059	20385	33271	33272	71027	71027					-0.079100309445721
YFNLYREKF	9	Unmodified	_YFNLYREKF_					0	0	0		ENST00000502290.1_1_4:141463686-141471526:+|nuORF;ENSG00000179387|ENST00000323570|ELMOD2	ENST00000502290.1_1_4:141463686-141471526:+|nuORF	ENST00000502290.1_1_4:141463686-141471526:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.2201232910156	3	427.220513	1278.63971	0.039108	1.6708E-05	-0.48837	-0.00020864	-0.44926	-0.00019193	427.220252632437	36.183	0.93084	36.183	35.856	36.787	0					81	33	3	0	0	0	0.28225	1	7409	7409		11.495	0.6952	1	1326300			58060	7119	33272	33273	71028	71028					0.011533899144069437
YFNRKTFSF	9	Unmodified	_YFNRKTFSF_					0	0	0		nc|ENSG00000137700|O43826|SLC37A4;ENSG00000137700|ENST00000330775|SLC37A4;nc|ENSG00000137700|O43826-2|SLC37A4;ENST00000526626.6_1_11:118898577-118900094:-|nuORF;ENST00000532085.1_1_11:118899923-118900094:-|nuORF;ENST00000532888.6_1_11:118899072-118900094:-|nuORF;ENST00000529510.5_1_11:118897799-118900094:-|nuORF;ENST00000525787.1_1_11:118898858-118900094:-|nuORF;ENST00000525102.5_1_11:118898396-118900094:-|nuORF	nc|ENSG00000137700|O43826|SLC37A4	nc|ENSG00000137700|O43826|SLC37A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.8735046386719	3	403.873224	1208.59784	0.00093356	3.7704E-07	-0.025866	-1.0446E-05	-0.024932	-1.0069E-05	403.873371044012	45.403	0.53379	45.468	45.248	45.782	0.065048					48	19	4	0	0	0	0.20679	1	10151	10151		22.658	9.7855	1	367720			58061	4067	33273	33274	71029	71029					0.0018883422587805399
YFNRTLLGDQ	10	Unmodified	_YFNRTLLGDQ_					0	0	0		ENST00000532317.5_1_11:85669678-85669726:-|nuORF	ENST00000532317.5_1_11:85669678-85669726:-|nuORF	ENST00000532317.5_1_11:85669678-85669726:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.2423400878906	3	409.543655	1225.60914	-0.35478	-0.0001453	0.40835	0.00016724	0.053571	2.194E-05	409.54383698516125	14.945	0.52819	14.945	14.729	15.257	0					33	18	3	0	0	0	0.32068	1	969	969		3.5871	0.74377	1	168260			58062	11637	33274	33275	71030	71030					0.00535611529403468
YFNRTLLGDQ	10	Unmodified	_YFNRTLLGDQ_					0	0	0		ENST00000532317.5_1_11:85669678-85669726:-|nuORF	ENST00000532317.5_1_11:85669678-85669726:-|nuORF	ENST00000532317.5_1_11:85669678-85669726:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	409.543655	1225.60914	-0.14475	-5.928E-05	-0.28461	-0.00011656	-0.42935	-0.00017584	409.54357566387927	15.042	0.36197	14.932	14.706	15.068	-0.10981	-0.024556	-0.00048466	NaN	3.5871	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194260			58063	11637	33274	33275							0.00535611529403468
YFNRTLLGDQ	10	Unmodified	_YFNRTLLGDQ_					0	0	0		ENST00000532317.5_1_11:85669678-85669726:-|nuORF	ENST00000532317.5_1_11:85669678-85669726:-|nuORF	ENST00000532317.5_1_11:85669678-85669726:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	409.543655	1225.60914	-0.22683	-9.2896E-05	0.0296	1.2122E-05	-0.19723	-8.0773E-05	409.5436702452619	15.058	0.31467	14.993	14.871	15.186	-0.064413	0.036425	-9.8612E-05	NaN	3.5871	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164980			58064	11637	33274	33275							0.00535611529403468
YFNTKNNIY	9	Unmodified	_YFNTKNNIY_					0	0	0			REV__SCN8A|p.F769Lfs*11|1|0.04|ENSG00000196876|chr12:51751529-51751530|-/ATTAA|frameshift_variant	REV__SCN8A|p.F769Lfs*11|1|0.04|ENSG00000196876|chr12:51751529-51751530|-/ATTAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.3076782226562	2	588.787838	1175.56112	0.35769	0.00021061	-0.15341	-9.0327E-05	0.20428	0.00012028	588.788096494793	69.243	0.36528	69.309	69.094	69.459	0.06604					17	12	2	0	0	0	0.21905	1	17460	17460		23.148	10.106	1	100020	+		58065	18691	33275	33276	71031	71031					-0.019634623906767956
YFPANKLII	9	Unmodified	_YFPANKLII_					0	0	0			REV__ENST00000337138.8_1_14:62214020-62214092:+|nuORF	REV__ENST00000337138.8_1_14:62214020-62214092:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8184814453125	2	539.81841	1077.62227	0.36373	0.00019635	-0.053565	-2.8916E-05	0.31017	0.00016743	539.8183018857089	93.559	1.0049	93.559	93.161	94.166	0					248	84	4	0	0	0	0.27532	1	25024	25024		12.532	12.532	1	1260800	+		58066	20080	33276	33277	71032	71032					0.0865609437942112
YFPANKLII	9	Unmodified	_YFPANKLII_					0	0	0			REV__ENST00000337138.8_1_14:62214020-62214092:+|nuORF	REV__ENST00000337138.8_1_14:62214020-62214092:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.818359375	2	539.81841	1077.62227	0.41068	0.00022169	-0.06799	-3.6702E-05	0.34269	0.00018499	539.8183048844282	93.43	0.99466	93.517	93.109	94.104	0.086678					240	84	4	0	0	0	0.27532	1	24985	24985		12.532	5.2423	1	1899300	+		58067	20080	33276	33277	71033	71033					0.0865609437942112
YFPANKLII	9	Unmodified	_YFPANKLII_					0	0	0			REV__ENST00000337138.8_1_14:62214020-62214092:+|nuORF	REV__ENST00000337138.8_1_14:62214020-62214092:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.8184204101562	2	539.81841	1077.62227	0.41068	0.00022169	-0.06799	-3.6702E-05	0.34269	0.00018499	539.8183048844282	93.43	0.99466	93.517	93.109	94.104	0.086678					240	84	4	0	0	0	0.23783	1	24942	24942		18.135	18.135	1	1899300	+		58068	20080	33276	33277	71034	71034					0.0865609437942112
YFPDAIPLI	9	Unmodified	_YFPDAIPLI_					0	0	0		nc|ENSG00000117009|O15229-2|KMO;ENSG00000117009|ENST00000366559|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7898559570312	2	524.789318	1047.56408	0.6228	0.00032684	-0.43722	-0.00022945	0.18558	9.739E-05	524.789202888994	90.072	0.7234	90.073	89.786	90.509	0.0003891					89	57	2	0	0	0	0.21303	2	23870	23870;23922		21.747	4.8044	1	121680			58069	12670;12671	33277	33278	71035;71036	71035					0.04220412734139245
YFPDAIPLI	9	Unmodified	_YFPDAIPLI_					0	0	0		nc|ENSG00000117009|O15229-2|KMO;ENSG00000117009|ENST00000366559|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	524.789318	1047.56408	0.56788	0.00029802	-0.67082	-0.00035204	-0.10294	-5.4024E-05	524.7893096651534	90.072	0.55946	90.072	89.866	90.425	0	-0.0046098	-0.00016437	NaN	21.747	75	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77059			58070	12670;12671	33277	33278							0.04220412734139245
YFPDAIPLI	9	Unmodified	_YFPDAIPLI_					0	0	0		nc|ENSG00000117009|O15229-2|KMO;ENSG00000117009|ENST00000366559|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO;nc|ENSG00000117009|O15229-3|KMO	nc|ENSG00000117009|O15229-2|KMO	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	524.789318	1047.56408	0.52344	0.0002747	-0.45924	-0.000241	0.064205	3.3694E-05	524.7892932810881	89.994	0.6044	90.085	89.814	90.419	0.090675	0.0085313	5.7706E-05	NaN	21.747	79	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132460			58071	12670;12671	33277	33278							0.04220412734139245
YFPELIANF	9	Unmodified	_YFPELIANF_					0	0	0		nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2853393554688	2	557.2844	1112.55425	0.40283	0.00022449	1.4252	0.00079426	1.8281	0.0010187	557.2842980405879	88.861	0.61674	88.952	88.752	89.369	0.090569					49	28	3	0	0	0	0.22188	2	23491	23491;23570		20.454	4.2069	1	143380			58072	5812	33278	33279	71037;71038	71037					0.002472247287414575
YFPELIANF	9	Unmodified	_YFPELIANF_					0	0	0		nc|ENSG00000164209|Q96AG3-2|SLC25A46;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	nc|ENSG00000164209|Q96AG3-2|SLC25A46	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2843017578125	2	557.2844	1112.55425	0.34402	0.00019172	1.032	0.00057514	1.3761	0.00076685	557.2842863354672	89.003	0.68677	89.002	88.67	89.357	-0.00080872					68	28	3	0	0	0	0.21389	1	23489	23489		25.399	8.3128	1	207820			58073	5812	33278	33279	71039	71039					0.002472247287414575
YFPKYPQF	8	Unmodified	_YFPKYPQF_					0	0	0			REV__nc|ENSG00000143379|Q15047-3|SETDB1	REV__nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2742919921875	2	545.273835	1088.53312	0.60716	0.00033107	1.3699	0.00074696	1.977	0.001078	545.2746804971534	56.468	1.2619	56.468	56.316	57.578	0					87	46	2	0	0	0	0.38703	1	13686	13686		20.871	2.7362	1	490460	+		58074	16172	33279	33280	71040	71040					-0.007607405801081768
YFPKYPQF	8	Unmodified	_YFPKYPQF_					0	0	0			REV__nc|ENSG00000143379|Q15047-3|SETDB1	REV__nc|ENSG00000143379|Q15047-3|SETDB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2711791992188	2	545.273835	1088.53312	0.62209	0.00033921	-3.8609	-0.0021052	-3.2388	-0.001766	545.27203424055	70.207	0.82289	70.185	69.729	70.552	-0.022087					41	29	2	0	0	0	0.33916	1	17791	17791		26.341	3.1929	1	326620	+		58075	16172	33279	33280	71041	71041					-0.007607405801081768
YFPPKGYAF	9	Unmodified	_YFPPKGYAF_					0	0	0		CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.274169921875	2	545.273835	1088.53312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.531	1	52.531	52.031	53.031	0								0	0	0	0.17683	1	12339	12339		28.487	3.813	1				58076	241	33280	33281	71042	71042					-0.007607405801081768
YFPVAENLIF	10	Unmodified	_YFPVAENLIF_					0	0	0		ENST00000382040.3_1_2:7036126-7036219:+|nuORF	ENST00000382040.3_1_2:7036126-7036219:+|nuORF	ENST00000382040.3_1_2:7036126-7036219:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.8192138671875	2	606.818607	1211.62266	0.8121	0.0004928	-1.3591	-0.00082473	-0.54701	-0.00033194	606.818386105817	77.91	1.215	77.966	77.597	78.812	0.05542					110	44	4	0	0	0	0.38233	1	20195	20195		6.7232	1.4925	1	458970			58077	10002	33281	33282	71043	71043					0.02531469308587475
YFQLPLKFT	9	Unmodified	_YFQLPLKFT_					0	0	0		ENST00000466490.6_1_3:133538940-133539138:+|nuORF	ENST00000466490.6_1_3:133538940-133539138:+|nuORF	ENST00000466490.6_1_3:133538940-133539138:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.7720947265625	2	578.823692	1155.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.83	1	83.907	83.407	84.407	0.077095								0	0	0	0.23091	1	21941	21941		12.532	0.89125	1				58078	10812	33282	33283	71044	71044					0.061240770338372386
YFQNTQGLIF	10	Unmodified	_YFQNTQGLIF_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4	ENSG00000004059|ENST00000000233|ARF5;ENSG00000168374|ENST00000303436|ARF4	ENSG00000004059|ENST00000000233|ARF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.2994995117188	2	615.811313	1229.60807	0.19711	0.00012138	-0.19442	-0.00011973	0.0026895	1.6562E-06	615.8111303827056	75.237	0.89178	75.237	74.985	75.877	0					58	31	3	0	0	0	0.058265	2	19337	19337;19388		74.2	52.453	1	486320			58079	306;6271	33283	33284	71045;71046	71045					0.002453971604609251
YFQNTQGLIF	10	Unmodified	_YFQNTQGLIF_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4	ENSG00000004059|ENST00000000233|ARF5;ENSG00000168374|ENST00000303436|ARF4	ENSG00000004059|ENST00000000233|ARF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.29931640625	2	615.811313	1229.60807	0.21541	0.00013265	0.052571	3.2374E-05	0.26798	0.00016502	615.8113306917305	75.238	0.75656	75.291	74.998	75.755	0.052368					56	27	3	0	0	0	0.015119	2	19339	19288;19339		99.755	59.806	1	639630			58080	306;6271	33283	33284	71047;71048	71048					0.002453971604609251
YFQNTQGLIF	10	Unmodified	_YFQNTQGLIF_					0	0	0		ENSG00000004059|ENST00000000233|ARF5;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000168374|ENST00000303436|ARF4	ENSG00000004059|ENST00000000233|ARF5;ENSG00000168374|ENST00000303436|ARF4	ENSG00000004059|ENST00000000233|ARF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.2996215820312	2	615.811313	1229.60807	0.41014	0.00025257	-0.23687	-0.00014587	0.17327	0.0001067	615.8111694133798	75.316	0.74431	75.285	75.005	75.749	-0.031487					60	27	3	0	0	0	0.058265	2	19322	19322;19378		74.2	34.25	1	682380			58081	306;6271	33283	33284	71049;71050	71049					0.002453971604609251
YFQQQDIF	8	Unmodified	_YFQQQDIF_					0	0	0			REV__nc|ENSG00000067177|P46020-3|PHKA1	REV__nc|ENSG00000067177|P46020-3|PHKA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.2578125	2	544.756007	1087.49746	0.66431	0.00036189	1.7726	0.00096566	2.437	0.0013275	545.2579887177976	87.826	0.51271	87.915	87.701	88.213	0.089195					45	29	2	0	0	0	0.4397	1	23181	23181		9.3474	0.75416	1	120150	+		58082	13686	33284	33285	71051	71051					-0.04278822827768636
YFRDEEEFF	9	Unmodified	_YFRDEEEFF_					0	0	0			REV__ENSG00000099875|ENST00000250896|MKNK2	REV__ENSG00000099875|ENST00000250896|MKNK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.8526611328125	3	427.852266	1280.53497	0.25456	0.00010891	0.0031603	1.3521E-06	0.25772	0.00011027	427.85229712867914	41.588	0.7968	41.684	41.621	42.418	0.096626					53	30	2	0	0	0	0.30459	1	9019	9019		8.1555	0	1	1963600	+		58083	14140	33285	33286	71052	71052					-0.09407776352804831
YFRKALTHILI	11	Unmodified	_YFRKALTHILI_					0	0	0			REV__ENSG00000099219|ENST00000339450|ERMP1	REV__ENSG00000099219|ENST00000339450|ERMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.57049560546875	3	458.946724	1373.81834	0.35592	0.00016335	-0.75681	-0.00034733	-0.40089	-0.00018399	459.28038760935715	47.679	0.487	47.726	47.349	47.836	0.047523					20	17	2	0	0	0	0.33277	1	10828	10828		3.0723	0	1	208760	+		58084	14124	33286	33287	71053	71053					0.14638479553332218
YFRKALTHILI	11	Unmodified	_YFRKALTHILI_					0	0	0			REV__ENSG00000099219|ENST00000339450|ERMP1	REV__ENSG00000099219|ENST00000339450|ERMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.57025146484375	3	458.946724	1373.81834	0.54968	0.00025228	-0.26859	-0.00012327	0.28109	0.000129	458.94647957861264	47.693	0.52465	47.736	47.273	47.797	0.04332					30	19	2	0	0	0	0.33277	1	10819	10819		3.0723	0.98626	1	234230	+		58085	14124	33286	33287	71054	71054					0.14638479553332218
YFRKPIVP	8	Unmodified	_YFRKPIVP_					0	0	0		ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;PBRM1|p.V1336Sfs*48|1|0.44|ENSG00000163939|chr3:52563363-52563363|C/-|frameshift_variant;PBRM1|p.L1349Wfs*35|1|0.38|ENSG00000163939|chr3:52563324-52563324|G/-|frameshift_variant;PBRM1|p.P1339Lfs*45|1|0.24|ENSG00000163939|chr3:52563353-52563353|G/-|frameshift_variant;PBRM1|p.Q1346Rfs*38|1|0.15|ENSG00000163939|chr3:52563332-52563332|T/-|frameshift_variant;PBRM1|p.D1403Lfs*18|1|0.2|ENSG00000163939|chr3:52561847-52561848|TC/-|frameshift_variant;PBRM1|p.P1491Rfs*48|1|0.62|ENSG00000163939|chr3:52554861-52554861|G/-|frameshift_variant;PBRM1|p.V1505Lfs*34|1|0.32|ENSG00000163939|chr3:52554823-52554823|G/-|frameshift_variant;PBRM1|p.P1534Hfs*5|1|0.44|ENSG00000163939|chr3:52554732-52554732|G/-|frameshift_variant;PBRM1|p.Q1511Sfs*28|1|0.49|ENSG00000163939|chr3:52554802-52554802|G/-|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;PBRM1|p.L1564Wfs*32|1|0.68|ENSG00000163939|chr3:52550627-52550627|A/-|frameshift_variant;PBRM1|p.F1594Lfs*2|1|0.68|ENSG00000163939|chr3:52550536-52550536|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-9|PBRM1;PBRM1|p.Q1560Nfs*37|1|0.46|ENSG00000163939|chr3:52550749-52550750|-/TT|frameshift_variant;PBRM1|p.S1607Qfs*5|1|0.34|ENSG00000163939|chr3:52550499-52550499|A/-|frameshift_variant;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1	ENSG00000163939|ENST00000707071|PBRM1	ENSG00000163939|ENST00000707071|PBRM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.3055419921875	2	510.30547	1018.59639	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.35	1	116.35	115.85	116.85	0								0	0	0	0.38004	1	30127	30127		0.69038	0	1				58086	5762	33287	33288	71055	71055					0.08783244927792566
YFRMKFVLR	9	Unmodified	_YFRMKFVLR_					0	0	0			REV__ENSG00000169188|ENST00000374987|APEX2	REV__ENSG00000169188|ENST00000374987|APEX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.7802124023438	2	630.357711	1258.70087	0.31135	0.00019626	-1.1622	-0.00073261	-0.85086	-0.00053635	630.8582939356725	62.55	0.16772	62.647	62.521	62.689	0.096985					8	5	2	0	0	0	0.25526	1	15417	15417		7.9102	0	1	130430	+		58087	17504	33288	33289	71056	71056					0.08186623412871086
YFRWPMLLNM	10	Unmodified	_YFRWPMLLNM_					0	0	0		ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	ENSG00000137040|ENST00000259569|RANBP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	457.73822021484375	3	457.563116	1369.66752	-0.061852	-2.8301E-05	1.0099	0.0004621	0.94806	0.0004338	457.5637361711614	17.55	0.65005	17.433	17.162	17.812	-0.11739					59	22	4	0	0	0	0.31942	1	1602	1602		6.1918	1.4759	1	163460			58088	4022	33289	33290	71057	71057					-0.0025274642134718306
YFSCEEYDLS	10	Unmodified	_YFSCEEYDLS_					0	0	0			REV__nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8	REV__nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.3017578125	2	628.244812	1254.47507	0.96168	0.00060417	2.4621	0.0015468	3.4238	0.002151	628.2461277979019	56.254	0.13737	56.254	56.13	56.267	0					6	4	2	0	0	0	0.32009	1	13465	13465		3.9444	0	1	218720	+		58089	19228	33290	33291	71058	71058					-0.14198835078332195
YFSKGCLLCHF	11	Unmodified	_YFSKGCLLCHF_					0	0	0			REV__nc|ENSG00000215421|Q9C0G0-3|ZNF407	REV__nc|ENSG00000215421|Q9C0G0-3|ZNF407	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.87548828125	3	439.875471	1316.60458	0.31001	0.00013636	-0.60895	-0.00026786	-0.29895	-0.0001315	439.8753370241611	50.248	1.2749	50.248	49.923	51.198	0					157	46	5	0	0	0	0.41517	1	11642	11642		9.2438	9.2438	1	3433200	+		58090	19080	33291	33292	71059	71059					-0.04105312209389922
YFSLFSNNKF	10	Unmodified	_YFSLFSNNKF_					0	0	0			REV__ENST00000296292.7_1_3:53125644-53125815:-|nuORF	REV__ENST00000296292.7_1_3:53125644-53125815:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5924377441406	3	422.876634	1265.60807	0.093293	3.9452E-05	-0.32247	-0.00013636	-0.22918	-9.6913E-05	422.8764092327153	44.425	0.92162	44.5	44.094	45.016	0.075047					53	33	2	0	0	0	0.31942	1	9818	9818		3.5871	0	1	316860	+		58091	19791	33292	33293	71060	71060					-0.014106028395417525
YFSLIPTGF	9	Unmodified	_YFSLIPTGF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	522.7734985351562	2	522.773668	1043.53278	0.4596	0.00024027	-0.29609	-0.00015479	0.16351	8.548E-05	522.7733367612473	91.492	0.50484	91.492	91.305	91.809	0					83	38	3	0	0	0	0.28128	2	24306	24267;24306		11.64	0	1	223180			58092	4211	33293	33294	71061;71062	71062					0.012758397000425248
YFSLIPTGF	9	Unmodified	_YFSLIPTGF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7734985351562	2	522.773668	1043.53278	0.43763	0.00022878	-0.17372	-9.0816E-05	0.26391	0.00013796	522.773448671699	91.35	0.61432	91.44	91.229	91.843	0.090668					101	45	3	0	0	0	0.25314	3	24264	24224;24264;24283		15.847	0	1	317000			58093	4211	33293	33294	71063;71064;71065	71064					0.012758397000425248
YFSLIPTGF	9	Unmodified	_YFSLIPTGF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.7738037109375	2	522.773668	1043.53278	0.60176	0.00031458	-0.32138	-0.00016801	0.28038	0.00014658	522.7733411487729	91.466	0.59551	91.467	91.236	91.832	0.00046539					83	38	3	0	0	0	0.25314	3	24259	24259;24299;24325		15.847	5.0233	1	368920			58094	4211	33293	33294	71066;71067;71068	71066					0.012758397000425248
YFSLPSVVF	9	Unmodified	_YFSLPSVVF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.7816772460938	2	529.781493	1057.54843	0.47832	0.0002534	-3.4912	-0.0018496	-3.0129	-0.0015962	529.7812018352081	91.815	0.79408	91.815	91.279	92.073	0					76	54	2	0	0	0	0.17611	1	24412	24412		34.102	9.4286	1	122020			58095	8529;12963;8544;8548	33294	33295	71069	71069					0.021961262170862028
YFSLPSVVF	9	Unmodified	_YFSLPSVVF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.7816162109375	2	529.781493	1057.54843	0.40721	0.00021573	-2.4172	-0.0012806	-2.01	-0.0010648	529.7812128802871	91.62	0.47321	91.711	91.556	92.029	0.090675					50	29	2	0	0	0	0.12846	1	24370	24370		34.102	9.4286	1	154350			58096	8529;12963;8544;8548	33294	33295	71070	71070					0.021961262170862028
YFSLPSVVF	9	Unmodified	_YFSLPSVVF_					0	0	0		ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000244122|Q9HAW7-2|UGT1A7	ENSG00000241119|ENST00000354728|UGT1A9;ENSG00000242366|ENST00000373450|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9	ENSG00000241119|ENST00000354728|UGT1A9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.7811889648438	2	529.781493	1057.54843	0.65447	0.00034673	-1.2996	-0.00068852	-0.64515	-0.00034179	529.7811518902398	91.776	0.45169	91.777	91.569	92.021	0.00046539					53	26	3	0	0	0	0.1524	1	24398	24398		39.957	15.283	1	222420			58097	8529;12963;8544;8548	33294	33295	71071	71071					0.021961262170862028
YFSTISSSF	9	Unmodified	_YFSTISSSF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3008422851562	2	519.742565	1037.47058	0.64123	0.00033327	-0.2319	-0.00012053	0.40933	0.00021275	519.742233655434	64.405	0.54135	64.405	64.158	64.699	0					45	19	3	0	0	0	0.090484	1	15989	15989		54.774	6.4277	1	646570			58098	8538	33295	33296	71072	71072					-0.04665931438944426
YFSTISSSF	9	Unmodified	_YFSTISSSF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.30078125	2	519.742565	1037.47058	0.53753	0.00027938	0.0022804	1.1852E-06	0.53982	0.00028056	519.7422975962706	64.418	0.54561	64.408	64.177	64.723	-0.0095291					48	19	3	0	0	0	0.074331	1	15973	15973		61.357	6.5839	1	739520			58099	8538	33295	33296	71073	71073					-0.04665931438944426
YFTLFLPAL	9	Unmodified	_YFTLFLPAL_					0	0	0		nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000138767|ENST00000504123|CNOT6L	nc|ENSG00000138767|Q96LI5-2|CNOT6L	nc|ENSG00000138767|Q96LI5-2|CNOT6L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8073120117188	2	542.807511	1083.60047	0.38438	0.00020864	0.65225	0.00035405	1.0366	0.00056269	542.8075942277254	76.282	1.8296	76.282	75.154	76.983	0					115	66	3	0	0	0	0.30623	1	19631	19631		7.9102	2.1497	1	417460			58100	4191	33296	33297	71074	71074					0.06201289630848805
YFTLFLRYF	9	Unmodified	_YFTLFLRYF_					0	0	0			REV__Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|63|2|anti-sense	REV__Harlequin-int_dup158|chr4:69052334-69053326:+|1.535925901726466|0.0414825534191477|5.21|532.0|63|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.5580139160156	3	423.893737	1268.65938	-0.26751	-0.0001134	-2.2165	-0.00093956	-2.484	-0.001053	423.8928854230806	46.489	0.13453	46.543	46.44	46.574	0.054375					6	4	2	0	0	0	0.25612	1	10442	10442		4.897	0	1	132870	+		58101	22696	33297	33298	71075	71075					0.03579765925178435
YFTLQMLKR	9	Unmodified	_YFTLQMLKR_					0	0	0		ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-2|LDAH;nc|ENSG00000118961|Q9H6V9-4|LDAH;nc|ENSG00000118961|Q9H6V9-3|LDAH	ENSG00000118961|ENST00000237822|LDAH	ENSG00000118961|ENST00000237822|LDAH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3345336914062	2	600.333901	1198.65325	0.74068	0.00044466	0.64463	0.00038699	1.3853	0.00083165	600.3341984924119	84.025	1.2388	84.025	82.925	84.163	0					90	48	3	0	0	0	0.33018	1	21953	21953		4.3292	0	1	1154300			58102	2852	33298	33299	71076	71076					0.06186924421990625
YFTLQMLKR	9	Unmodified	_YFTLQMLKR_					0	0	0		ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-2|LDAH;nc|ENSG00000118961|Q9H6V9-4|LDAH;nc|ENSG00000118961|Q9H6V9-3|LDAH	ENSG00000118961|ENST00000237822|LDAH	ENSG00000118961|ENST00000237822|LDAH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3344116210938	2	600.333901	1198.65325	0.71064	0.00042662	0.58222	0.00034953	1.2929	0.00077615	600.3340446435084	83.86	2.8022	83.937	83.243	86.045	0.077095					275	109	3	0	0	0	0.33018	1	22067	22067		4.3292	0	1	1104800			58103	2852	33298	33299	71077	71077					0.06186924421990625
YFTTVSESL	9	Unmodified	_YFTTVSESL_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.2637939453125	2	523.755672	1045.49679	-0.1915	-0.0001003	0.26077	0.00013658	0.069266	3.6279E-05	523.755803836494	59.89	0.38149	59.985	59.798	60.18	0.095089					21	13	2	0	0	0	0.20651	1	14651	14651		26.884	0	1	559570			58104	2963	33299	33300	71078	71078					-0.024136622674632235
YFTTVSESL	9	Unmodified	_YFTTVSESL_					0	0	0		ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-2|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	ENSG00000120733|ENST00000314358|KDM3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2843017578125	2	523.755672	1045.49679	0.30129	0.0001578	-0.76913	-0.00040283	-0.46783	-0.00024503	524.2566517617613	60.037	0.56086	60.026	59.763	60.324	-0.011486					27	19	2	0	0	0	0.015402	1	14652	14652		71.134	22.788	1	422110			58105	2963	33299	33300	71079	71079					-0.024136622674632235
YFTYSALEEE	10	Unmodified	_YFTYSALEEE_					0	0	0		nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	nc|ENSG00000103415|P30519-2|HMOX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	626.2745971679688	2	626.274426	1250.5343	0.039793	2.4921E-05	0.058322	3.6525E-05	0.098115	6.1447E-05	626.2744310284451	56.937	0.63494	57.016	56.73	57.365	0.078671					47	23	3	0	0	0	0.40992	1	13713	13713		1.6526	0	1	650530			58106	1833	33300	33301	71080	71080					-0.08094615792492732
YFVFDHALM	9	Unmodified	_YFVFDHALM_					0	0	0		ENST00000524683.5_1_11:121174081-121174345:+|nuORF;ENST00000534455.5_1_11:121174081-121175207:+|nuORF;ENST00000531140.1_1_11:121174081-121177378:+|nuORF;ENSG00000109929|ENST00000264027|SC5D	ENST00000524683.5_1_11:121174081-121174345:+|nuORF	ENST00000524683.5_1_11:121174081-121174345:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7721557617188	2	571.770603	1141.52665	0.25514	0.00014588	1.0766	0.00061558	1.3318	0.00076146	571.7711836858829	80.326	2.637	80.299	79.497	82.134	-0.026825					224	104	3	0	0	0	0.30623	1	20799	20799		7.9102	0	1	663550			58107	2282	33301	33302	71081	71081					-0.038450018031426225
YFVFLFYF	8	Unmodified	_YFVFLFYF_					0	0	0			REV__ENST00000306442.4_1_5:122359405-122359573:-|nuORF	REV__ENST00000306442.4_1_5:122359405-122359573:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.2889404296875	2	573.288954	1144.56336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.64	1	114.63	114.13	115.13	-0.019096								0	0	0	0.37992	1	29758	29758		0.79363	0	1		+		58108	19861	33302	33303	71082	71082					-0.003143819149272531
YFVPVVSML	9	Unmodified	_YFVPVVSML_					0	0	0			REV__ENSG00000106804|ENST00000223642|C5;REV__CON__Q1A7A4	REV__CON__Q1A7A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2743530273438	2	527.785721	1053.55689	0.30618	0.0001616	-0.27911	-0.00014731	0.027065	1.4285E-05	527.7856881678415	69.787	0.41418	69.853	69.637	70.051	0.06604					21	14	2	0	0	0	0.23783	1	17633	17633		18.135	1.1927	1	169720	+	+	58109	14536;13261	33303	33304	71083	71083					0.03225356862071749
YFVPVVSML	9	Unmodified	_YFVPVVSML_					0	0	0			REV__ENSG00000106804|ENST00000223642|C5;REV__CON__Q1A7A4	REV__CON__Q1A7A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3161010742188	2	527.785721	1053.55689	0.44206	0.00023332	-0.47191	-0.00024907	-0.029845	-1.5752E-05	527.785693111275	69.824	0.45399	69.802	69.564	70.018	-0.022087					26	16	2	0	0	0	0.24739	1	17703	17703		13.508	2.3934	1	250570	+	+	58110	14536;13261	33303	33304	71084	71084					0.03225356862071749
YFVPVVSML	9	Unmodified	_YFVPVVSML_					0	0	0			REV__ENSG00000106804|ENST00000223642|C5;REV__CON__Q1A7A4	REV__CON__Q1A7A4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	527.785721	1053.55689	0.3798	0.00020045	-0.31286	-0.00016512	0.066942	3.5331E-05	527.7857620490722	69.78	0.5481	69.78	69.398	69.946	0	-0.031552	6.3923E-05	NaN	18.135	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150700	+	+	58111	14536;13261	33303	33304							0.03225356862071749
YFVSIIKNIE	10	Unmodified	_YFVSIIKNIE_					0	0	0			REV__ENSG00000197591|ENST00000355784|OR11L1	REV__ENSG00000197591|ENST00000355784|OR11L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	613.3329467773438	2	613.344989	1224.67542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.05	1	48.094	47.594	48.594	0.04332								0	0	0	0.3629	1	10953	10953		9.3831	0	1		+		58112	18749	33304	33305	71085	71085					0.07207427371440644
YFVVSGEILI	10	Unmodified	_YFVVSGEILI_					0	0	0			REV__ENSG00000176142|ENST00000319172|TMEM39A	REV__ENSG00000176142|ENST00000319172|TMEM39A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.35888671875	2	570.320983	1138.62741	0.42301	0.00024125	0.22654	0.0001292	0.64954	0.00037045	570.3209297243361	86.92	0.57504	87.007	86.754	87.329	0.08709					41	23	2	0	0	0	0.318	1	22820	22820		3.9444	0	1	284120	+		58113	17922	33305	33306	71086	71086					0.06364353451385796
YFWMLCEGIYL	11	Unmodified	_YFWMLCEGIYL_					0	0	0		nc|ENSG00000004948|P30988-4|CALCR;nc|ENSG00000004948|P30988-1|CALCR;nc|ENSG00000004948|P30988-3|CALCR;ENSG00000004948|ENST00000426151|CALCR;ENSG00000064989|ENST00000392370|CALCRL;nc|ENSG00000004948|P30988-6|CALCR;nc|ENSG00000004948|P30988-5|CALCR	nc|ENSG00000004948|P30988-4|CALCR;nc|ENSG00000004948|P30988-6|CALCR	nc|ENSG00000004948|P30988-6|CALCR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2671813964844	3	479.890899	1436.65087	0.033685	1.6165E-05	-0.49392	-0.00023703	-0.46024	-0.00022086	479.89041340646776	23.741	0.15671	23.741	23.643	23.8	0					5	4	2	0	0	0	0.33347	1	3517	3517		0.45452	0	1	12102			58114	12555;12556	33306	33307	71087	71087					-0.04999292097954822
YFYDDHRQ	8	Unmodified	_YFYDDHRQ_					0	0	0			REV__RCN2|p.L307R|1|0.34|ENSG00000117906|chr15:76949188-76949188|T/G|missense_variant	REV__RCN2|p.L307R|1|0.34|ENSG00000117906|chr15:76949188-76949188|T/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.8157958984375	2	572.246338	1142.47812	0.43728	0.00025023	2.0453	0.0011704	2.4826	0.0014206	572.2481394098866	63.145	0.13914	63.241	63.2	63.339	0.095722					6	4	2	0	0	0	0.34297	1	15616	15616		6.3541	0	1	68527	+		58115	23298	33307	33308	71088	71088					-0.08741779118690829
YFYFKKKRNAF	11	Unmodified	_YFYFKKKRNAF_					0	0	0			REV__ENST00000358951.6_1_1:220321974-220322112:-|nuORF	REV__ENST00000358951.6_1_1:220321974-220322112:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2772521972656	3	504.610111	1510.8085	0.51101	0.00025786	-2.7284	-0.0013768	-2.2174	-0.0011189	504.94287177228153	50.261	0.2991	50.261	50.108	50.407	0					15	10	2	0	0	0	0.3322	1	11681	11681		4.7159	4.0183	1	243040	+		58116	20238	33308	33309	71089	71089					0.07353291547929075
YFYGDEISF	9	Unmodified	_YFYGDEISF_					0	0	0		ENSG00000123838|ENST00000367070|C4BPA	ENSG00000123838|ENST00000367070|C4BPA	ENSG00000123838|ENST00000367070|C4BPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7896728515625	2	570.747847	1139.48114	0.72671	0.00041477	-0.67424	-0.00038482	0.052471	2.9947E-05	570.7473268063549	77.803	0.62664	77.858	77.597	78.223	0.055412					50	22	3	0	0	0	0.25417	1	20194	20194		8.5933	0	1	286250			58117	3124	33309	33310	71090	71090					-0.08301948784514934
YFYPYGLQTF	10	Unmodified	_YFYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.808349609375	2	649.808239	1297.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.738	1	82.738	82.238	83.238	0								0	0	0	0.0080203	1	21613	21613		72.968	59.062	1				58118	1551	33310	33311	71091	71091					-0.034971210710637024
YFYPYGLQTF	10	Unmodified	_YFYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.807861328125	2	649.808239	1297.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.957	1	82.957	82.457	83.457	0								0	0	0	0.0080203	1	21681	21681		72.968	57.121	1				58119	1551	33310	33311	71092	71092					-0.034971210710637024
YFYPYGLQTF	10	Unmodified	_YFYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8085327148438	2	649.808239	1297.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.637	1	82.71	82.21	83.21	0.073097								0	0	0	2.251E-05	1	21572	21572		96.367	80.217	1				58120	1551	33310	33311	71093	71093					-0.034971210710637024
YFYPYGLQTF	10	Unmodified	_YFYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.80810546875	2	649.808239	1297.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.802	1	82.875	82.375	83.375	0.073097								0	0	0	2.251E-05	1	21624	21624		96.367	80.217	1				58121	1551	33310	33311	71094	71094					-0.034971210710637024
YFYPYGLQTF	10	Unmodified	_YFYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8076782226562	2	649.808239	1297.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.721	1	82.701	82.201	83.201	-0.020584								0	0	0	0.0030064	1	21592	21592		86.332	70.183	1				58122	1551	33310	33311	71095	71095					-0.034971210710637024
YFYPYGLQTF	10	Unmodified	_YFYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8077392578125	2	649.808239	1297.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.872	1	82.852	82.352	83.352	-0.020584								0	0	0	2.251E-05	1	21639	21639		96.367	80.217	1				58123	1551	33310	33311	71096	71096					-0.034971210710637024
YFYPYGLQTF	10	Unmodified	_YFYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8088989257812	2	649.808239	1297.60193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.312	1	83.291	82.791	83.791	-0.020584								0	0	0	0.27706	1	21775	21775		30.637	16.73	1				58124	1551	33310	33311	71097	71097					-0.034971210710637024
YFYSNTCLF	9	Unmodified	_YFYSNTCLF_					0	0	0		ENST00000283195.10_1_2:109381488-109381560:+|nuORF	ENST00000283195.10_1_2:109381488-109381560:+|nuORF	ENST00000283195.10_1_2:109381488-109381560:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.2408447265625	2	579.252243	1156.48993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.315	1	98.377	97.877	98.877	0.061516								0	0	0	0.23367	1	26314	26314		11.64	3.047	1				58125	9129	33311	33312	71098	71098					-0.082052984197162
YGDNCIQKIY	10	Unmodified	_YGDNCIQKIY_					0	0	0		ENSG00000179142|ENST00000323110|CYP11B2;nc|ENSG00000160882|P15538-2|CYP11B1;ENSG00000160882|ENST00000292427|CYP11B1	ENSG00000179142|ENST00000323110|CYP11B2	ENSG00000179142|ENST00000323110|CYP11B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.3168334960938	2	608.786981	1215.55941	0.48048	0.00029251	1.9595	0.0011929	2.4399	0.0014854	608.7884529251862	33.268	0.54976	33.323	33.143	33.693	0.055309					35	19	3	0	0	0	0.31838	1	6483	6483		7.609	1.4032	1	300320			58126	7106	33312	33313	71099	71099					-0.039748394709477
YGERPYWNM	9	Unmodified	_YGERPYWNM_					0	0	0		ENSG00000070886|ENST00000166244|EPHA8	ENSG00000070886|ENST00000166244|EPHA8	ENSG00000070886|ENST00000166244|EPHA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.8467712402344	3	405.846569	1214.51788	0.040018	1.6241E-05	0.33669	0.00013664	0.37671	0.00015289	405.8466348273288	53.358	0.88419	53.358	53.09	53.974	0					108	32	5	0	0	0	0.33018	1	12564	12564		2.4985	2.4985	1	1876700			58127	945	33313	33314	71100	71100					-0.08079975439613918
YGERPYWNM	9	Unmodified	_YGERPYWNM_					0	0	0		ENSG00000070886|ENST00000166244|EPHA8	ENSG00000070886|ENST00000166244|EPHA8	ENSG00000070886|ENST00000166244|EPHA8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.84674072265625	3	405.846569	1214.51788	0.04362	1.7703E-05	-0.051075	-2.0729E-05	-0.0074552	-3.0257E-06	405.8466354569411	53.614	1.0418	53.605	53.247	54.289	-0.0096092					133	38	6	0	0	0	0.33018	1	12632	12632		2.4985	0.41248	1	2220900			58128	945	33313	33314	71101	71101					-0.08079975439613918
YGFRNWRL	8	Unmodified	_YGFRNWRL_					0	0	0		nc|ENSG00000172940|Q9Y226-2|SLC22A13;ENSG00000172940|ENST00000311856|SLC22A13	nc|ENSG00000172940|Q9Y226-2|SLC22A13	nc|ENSG00000172940|Q9Y226-2|SLC22A13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.77294921875	2	556.293425	1110.5723	0.004019	2.2358E-06	-0.72874	-0.00040539	-0.72472	-0.00040316	556.2929074568747	14.421	0.25423	14.421	14.307	14.561	0					20	8	3	0	0	0	0.34437	1	706	706		0.69038	0	1	69211			58129	6678	33314	33315	71102	71102					0.021434044941315733
YGGCTVQYAVF	11	Unmodified	_YGGCTVQYAVF_					0	0	0		ENSG00000177535|ENST00000641149|OR2B11	ENSG00000177535|ENST00000641149|OR2B11	ENSG00000177535|ENST00000641149|OR2B11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.2747802734375	2	604.276249	1206.53795	0.67764	0.00040948	-2.0752	-0.001254	-1.3975	-0.00084449	604.2743277036225	79.007	0.72762	79.065	78.71	79.437	0.058151					60	32	3	0	0	0	0.36943	1	20440	20440		15.248	3.0078	1	157120			58130	6995	33315	33316	71103	71103					-0.057062244996814115
YGHLKISI	8	Unmodified	_YGHLKISI_					0	0	0		ENST00000481600.5_1_10:127417653-127452038:+|nuORF	ENST00000481600.5_1_10:127417653-127452038:+|nuORF	ENST00000481600.5_1_10:127417653-127452038:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.78900146484375	2	465.774003	929.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.474	1	50.494	49.994	50.994	0.020691								0	0	0	0.34492	1	11699	11699		16.942	0	1				58131	11034	33316	33317	71104	71104					0.06586679139752505
YGILPPFIW	9	Unmodified	_YGILPPFIW_					0	0	0		ENST00000471365.1_1_10:38658087-38667032:+|nuORF;nc|ENSG00000132196|P56937-2|HSD17B7;ENSG00000132196|ENST00000254521|HSD17B7	ENST00000471365.1_1_10:38658087-38667032:+|nuORF	ENST00000471365.1_1_10:38658087-38667032:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.8236083984375	2	553.307678	1104.6008	0.4786	0.00026481	0.17284	9.5635E-05	0.65145	0.00036045	553.3078911234052	49.195	0.43776	49.195	48.97	49.408	0					25	15	2	0	0	0	0.24542	1	11256	11256		14.582	7.2925	1	371280			58132	3614	33317	33318	71105	71105					0.052687093506847305
YGIPPRIHH	9	Unmodified	_YGIPPRIHH_					0	0	0			REV__ENSG00000116783|ENST00000326637|TNNI3K	REV__ENSG00000116783|ENST00000326637|TNNI3K	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2901000976562	2	545.30125	1088.58795	0.53881	0.00029381	-1.4598	-0.00079605	-0.92102	-0.00050223	545.3001837149677	52.888	0.10921	52.888	52.797	52.906	0					5	3	2	0	0	0	0.24913	1	12430	12430		12.532	0	1	184460	+		58133	14938	33318	33319	71106	71106					0.047196910111551915
YGITSNSYTHF	11	Unmodified	_YGITSNSYTHF_					0	0	0			REV__nc|ENSG00000177301|P16389-2|KCNA2	REV__nc|ENSG00000177301|P16389-2|KCNA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.863037109375	2	645.293485	1288.57242	0.81783	0.00052774	-0.52908	-0.00034141	0.28875	0.00018633	645.2931624720106	55.917	0.29613	55.988	55.751	56.048	0.070885					16	10	2	0	0	0	0.32905	1	13366	13366		10.151	0	1	707070	+		58134	17980	33319	33320	71107	71107					-0.06032685087188838
YGIYLYLGHN	10	Unmodified	_YGIYLYLGHN_					0	0	0		ENST00000427796.5_1_1:24087382-24087430:-|nuORF	ENST00000427796.5_1_1:24087382-24087430:-|nuORF	ENST00000427796.5_1_1:24087382-24087430:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.57025146484375	3	404.873113	1211.59751	-0.43564	-0.00017638	-4.2468	-0.0017194	-4.6824	-0.0018958	404.8712745992042	12.706	0.1525	12.606	12.49	12.643	-0.099291					5	4	2	0	0	0	0.32162	1	190	190		0.77653	0	1	9643.2			58135	10438	33320	33321	71108	71108					0.0001741450603276462
YGKKKRRYL	9	Unmodified	_YGKKKRRYL_					0	0	0		ENSG00000221968|ENST00000278829|FADS3;ENST00000414624.6_1_11:61645294-61658904:-|nuORF	ENSG00000221968|ENST00000278829|FADS3	ENSG00000221968|ENST00000278829|FADS3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8016357421875	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.92	1	112.93	112.43	113.43	0.014824								0	0	0	0.264	1	29381	29381		1.8442	1.3195	1				58136	8430	33321	33322	71109	71109					0.13292484033513574
YGKKKRRYL	9	Unmodified	_YGKKKRRYL_					0	0	0		ENSG00000221968|ENST00000278829|FADS3;ENST00000414624.6_1_11:61645294-61658904:-|nuORF	ENSG00000221968|ENST00000278829|FADS3	ENSG00000221968|ENST00000278829|FADS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.8717651367188	2	606.372207	1210.72986	0.27572	0.00016719	-2.9824	-0.0018085	-2.7067	-0.0016413	606.3701043376371	118.71	0.1582	118.74	118.68	118.84	0.026253					21	19	2	0	0	0	0.26257	1	30719	30719		0.52476	0.066424	1	18158			58137	8430	33321	33322	71110	71110					0.13292484033513574
YGKNVLFFT	9	Unmodified	_YGKNVLFFT_					0	0	0		nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7925415039062	2	544.792392	1087.57023	0.066579	3.6272E-05	0.92932	0.00050629	0.9959	0.00054256	544.7921463106824	115.09	0.31267	115.09	114.93	115.24	0					63	39	2	0	0	0	0.34536	1	29851	29851		2.0598	0	1	30088			58138	12708	33322	33323	71111	71111					0.0299493096565584
YGKNVLFFT	9	Unmodified	_YGKNVLFFT_					0	0	0		nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7919311523438	2	544.792392	1087.57023	0.38154	0.00020786	0.67937	0.00037012	1.0609	0.00057797	544.7919775586444	115.91	0.43501	115.89	115.69	116.12	-0.020996					91	54	2	0	0	0	0.34536	1	30061	30061		2.0598	0.21551	1	24523			58139	12708	33322	33323	71112	71112					0.0299493096565584
YGKNVLFFT	9	Unmodified	_YGKNVLFFT_					0	0	0		nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7918090820312	2	544.792392	1087.57023	0.38166	0.00020793	0.79905	0.00043532	1.1807	0.00064325	544.7919638459817	116.39	0.40806	116.37	116.28	116.69	-0.022781					69	48	2	0	0	0	0.34536	1	30168	30168		2.0598	0.21551	1	24721			58140	12708	33322	33323	71113	71113					0.0299493096565584
YGKNVLFFT	9	Unmodified	_YGKNVLFFT_					0	0	0		nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.792236328125	2	544.792392	1087.57023	0.38238	0.00020832	0.90575	0.00049345	1.2881	0.00070177	545.2951444374214	119.87	0.35059	119.84	119.62	119.97	-0.024361					70	43	2	0	0	0	0.34536	1	30895	30895		2.0598	0.21551	1	25259			58141	12708	33322	33323	71114	71114					0.0299493096565584
YGKNVLFFT	9	Unmodified	_YGKNVLFFT_					0	0	0		nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7918090820312	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.39	1	114.37	113.87	114.87	-0.019096								0	0	0	0.26334	1	29704	29704		2.0598	0	1				58142	12708	33322	33323	71115	71115					0.0299493096565584
YGKNVLFFT	9	Unmodified	_YGKNVLFFT_					0	0	0		nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7908935546875	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.99	1	114.97	114.47	115.47	-0.020988								0	0	0	0.26334	1	29835	29835		2.0598	0.21551	1				58143	12708	33322	33323	71116	71116					0.0299493096565584
YGKNVLFFT	9	Unmodified	_YGKNVLFFT_					0	0	0		nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7925415039062	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.22	1	117.19	116.69	117.69	-0.024147								0	0	0	0.26334	1	30347	30347		2.0598	0	1				58144	12708	33322	33323	71117	71117					0.0299493096565584
YGKNVLFFT	9	Unmodified	_YGKNVLFFT_					0	0	0		nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7923583984375	2	544.792392	1087.57023	0.55351	0.00030155	0.81372	0.00044331	1.3672	0.00074486	544.7920130959856	113.36	0.22586	113.38	113.25	113.47	0.014832					39	26	2	0	0	0	0.34536	1	29496	29496		2.0598	0	1	38914			58145	12708	33322	33323	71118	71118					0.0299493096565584
YGKNVLFFT	9	Unmodified	_YGKNVLFFT_					0	0	0		nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7913818359375	2	544.792392	1087.57023	0.55554	0.00030265	1.3217	0.00072006	1.8772	0.0010227	545.2950066741154	116.22	0.49061	116.24	116.15	116.64	0.020996					88	60	2	0	0	0	0.34536	1	30219	30219		2.0598	0	1	116490			58146	12708	33322	33323	71119	71119					0.0299493096565584
YGKNVLFFT	9	Unmodified	_YGKNVLFFT_					0	0	0		nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-5|TPGS2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	544.792392	1087.57023	0.066579	3.6272E-05	0.92932	0.00050629	0.9959	0.00054256	544.7921463106824	115.09	0.31267	115.09	114.93	115.24	0	-0.11384	0.00013506	NaN	2.0598	63	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30088			58147	12708	33322	33323							0.0299493096565584
YGKVNIHSI	9	Unmodified	_YGKVNIHSI_					0	0	0		ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000366583.6_1_1:236689310-236706138:+|nuORF	ENSG00000116977|ENST00000366584|LGALS8	ENSG00000116977|ENST00000366584|LGALS8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2509155273438	2	515.787641	1029.56073	0.11344	5.8512E-05	0.51	0.00026305	0.62344	0.00032156	515.78786362281	42.215	1.1342	42.215	41.9	43.034	0					119	40	4	0	0	0	0.1854	1	9360	9360		25.399	0	1	6155500			58148	2765	33323	33324	71120	71120					0.047131626801501625
YGKVTDRK	8	Unmodified	_YGKVTDRK_					0	0	0			REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2522888183594	2	483.771991	965.529429	-0.10654	-5.1543E-05	0.14968	7.2409E-05	0.043132	2.0866E-05	483.77195895773093	13.851	0.45809	13.851	13.597	14.055	0					23	15	2	0	0	0	0.34437	1	579	579		0.69038	0	1	172690	+		58149	16827	33324	33325	71121	71121					0.04528589646054115
YGLFDFVQR	9	Unmodified	_YGLFDFVQR_					0	0	0			REV__ENSG00000101198|ENST00000370316|NKAIN4	REV__ENSG00000101198|ENST00000370316|NKAIN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.792236328125	2	572.792924	1143.57129	0.14113	8.0836E-05	-0.98331	-0.00056323	-0.84218	-0.0004824	572.7922182121155	69.192	0.71773	69.192	68.9	69.618	0					60	25	3	0	0	0	0.27532	1	17533	17533		12.532	2.4576	1	1383200	+		58150	14255	33325	33326	71122	71122					0.005251453345636037
YGLSRRTI	8	Unmodified	_YGLSRRTI_					0	0	0			REV__ENSG00000186288|ENST00000373519|PABPC1L2A	REV__ENSG00000186288|ENST00000373519|PABPC1L2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2787170410156	2	483.279983	964.545414	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.857	1	84.938	84.438	85.438	0.080887								0	0	0	0.35014	1	22258	22258		14.582	0	1		+		58151	13734	33326	33327	71123	71123					0.06172295882936396
YGLSTFTDRL	10	Unmodified	_YGLSTFTDRL_					0	0	0			REV__nc|ENSG00000003402|O15519-4|CFLAR	REV__nc|ENSG00000003402|O15519-4|CFLAR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.312255859375	2	586.800946	1171.58734	-0.085375	-5.0098E-05	1.0361	0.00060798	0.95072	0.00055789	586.8016131408756	12.331	0.25831	12.263	12.118	12.377	-0.06806					18	8	3	0	0	0	0.32139	1	75	75		1.3295	1.3295	1	87794	+		58152	13324	33327	33328	71124	71124					0.008408067807977204
YGLWTRTYL	9	Unmodified	_YGLWTRTYL_					0	0	0			REV__nc|ENSG00000127838|Q8N490-4|PNKD	REV__nc|ENSG00000127838|Q8N490-4|PNKD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.33056640625	2	586.808574	1171.60259	0.5503	0.00032292	0.15934	9.35E-05	0.70964	0.00041642	586.8087005705346	36.108	0.48185	36.195	35.818	36.3	0.08625					23	17	2	0	0	0	0.24848	1	7204	7204		13.906	0	1	183460	+		58153	15352	33328	33329	71125	71125					0.02365718368673697
YGLYSNTAAF	10	Unmodified	_YGLYSNTAAF_					0	0	0			REV__ENSG00000060749|ENST00000650167|QSER1	REV__ENSG00000060749|ENST00000650167|QSER1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.2890625	2	553.761289	1105.50803	0.74012	0.00040985	-0.23036	-0.00012756	0.50977	0.00028229	553.7613070430401	48.246	0.50466	48.294	48.158	48.663	0.04752					32	18	3	0	0	0	0.31165	1	11071	11071		15.847	5.0233	1	444680	+		58154	13621	33329	33330	71126	71126					-0.04050840173340475
YGNKTELLV	9	Unmodified	_YGNKTELLV_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.7872924804688	2	518.787307	1035.56006	0.45679	0.00023698	-0.053689	-2.7853E-05	0.4031	0.00020912	518.7871438495221	41.911	0.66542	42.001	41.853	42.519	0.090252					40	23	2	0	0	0	0.07848	2	9088	9088;9133		42.312	3.0952	1	1733300			58155	4211	33330	33331	71127;71128	71127					0.04370323240414109
YGNKTELLV	9	Unmodified	_YGNKTELLV_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7874145507812	2	518.787307	1035.56006	0.52275	0.0002712	-0.17208	-8.9273E-05	0.35067	0.00018192	518.7870659805808	41.949	0.6564	42.046	41.79	42.446	0.096626					38	22	2	0	0	0	0.09758	1	9072	9072		38.615	2.1085	1	1547800			58156	4211	33330	33331	71129	71129					0.04370323240414109
YGNKTELLV	9	Unmodified	_YGNKTELLV_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	518.787307	1035.56006	0.16989	8.8135E-05	0.20326	0.00010545	0.37315	0.00019358	518.7872676722643	42.217	0.74585	42.217	41.932	42.678	0	0.1287	0.00023235	NaN	42.312	42	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1590900			58157	4211	33330	33331							0.04370323240414109
YGPDGLPYLK	10	Unmodified	_YGPDGLPYLK_					0	0	0		nc|ENSG00000066468|P21802-19|FGFR2;nc|ENSG00000066468|P21802-22|FGFR2;nc|ENSG00000066468|P21802-4|FGFR2;nc|ENSG00000066468|P21802-20|FGFR2;nc|ENSG00000066468|P21802-15|FGFR2;nc|ENSG00000066468|P21802-21|FGFR2;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2;nc|ENSG00000066468|P21802-18|FGFR2;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-3|FGFR2;nc|ENSG00000066468|P21802-16|FGFR2	nc|ENSG00000066468|P21802-19|FGFR2	nc|ENSG00000066468|P21802-19|FGFR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7949829101562	2	561.795132	1121.57571	0.1272	7.1458E-05	0.078657	4.4189E-05	0.20585	0.00011565	561.7950819873685	69.626	1.2028	69.626	69.147	70.35	0					103	43	4	0	0	0	0.18562	1	17626	17626		34.402	34.402	1	1559300			58158	841	33331	33332	71130	71130					0.01978609757452432
YGPPLAPNLF	10	Unmodified	_YGPPLAPNLF_					0	0	0			REV__nc|ENSG00000143569|Q14157-4|UBAP2L	REV__nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.8248901367188	2	544.792392	1087.57023	0.69042	0.00037613	0.47637	0.00025952	1.1668	0.00063566	545.2946027245982	88.524	1.5675	88.521	87.898	89.466	-0.0028381					142	73	2	0	0	0	0.20667	1	23295	23295		46.021	17.534	1	172880	+		58159	16189	33332	33333	71131	71131					0.029949309656331025
YGPSGLTAGPF	11	Unmodified	_YGPSGLTAGPF_					0	0	0			REV__ENST00000395290.6_1_11:47489658-47490021:-|nuORF	REV__ENST00000395290.6_1_11:47489658-47490021:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7637329101562	2	533.763832	1065.51311	0.31373	0.00016746	0.21492	0.00011472	0.52865	0.00028218	533.7639094064215	42.829	1.3404	42.914	41.959	43.299	0.085197					87	48	2	0	0	0	0.069	1	9330	9330		47.749	7.799	1	687460	+		58160	20631	33333	33334	71132	71132					-0.017025363107222802
YGPSGLTAGPF	11	Unmodified	_YGPSGLTAGPF_					0	0	0			REV__ENST00000395290.6_1_11:47489658-47490021:-|nuORF	REV__ENST00000395290.6_1_11:47489658-47490021:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7637329101562	2	533.763832	1065.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.696	1	42.787	42.287	43.287	0.091362								0	0	0	0.12753	1	9304	9304		41.84	1.8899	1		+		58161	20631	33333	33334	71133	71133					-0.017025363107222802
YGQGEGPIWLD	11	Unmodified	_YGQGEGPIWLD_					0	0	0		ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	ENSG00000138131|ENST00000260702|LOXL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.3373413085938	2	617.790578	1233.5666	-0.28847	-0.00017821	3.399	0.0020999	3.1105	0.0019216	618.2936245600362	65.365	0.11081	65.454	65.38	65.491	0.088882					5	3	2	0	0	0	0.32736	1	16285	16285		12.241	2.1667	1	56000			58162	4120	33334	33335	71134	71134					-0.0408378359886683
YGQHKFWSCI	10	Unmodified	_YGQHKFWSCI_					0	0	0			REV__ENSG00000109775|ENST00000264689|UFSP2	REV__ENSG00000109775|ENST00000264689|UFSP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.8636169433594	3	423.534214	1267.58081	-0.12289	-5.2048E-05	1.6006	0.00067789	1.4777	0.00062584	423.5349418934031	30.84	0.86881	30.84	30.525	31.394	0					49	30	2	0	0	0	0.31847	1	5838	5838		0.62683	0	1	122590	+		58163	14653	33335	33336	71135	71135					-0.042274096515484416
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.809814453125	2	627.809302	1253.60405	0.42002	0.00026369	0.012577	7.8957E-06	0.4326	0.00027159	627.8091815193069	30.521	1.0008	30.521	29.888	30.889	0					79	35	3	0	0	0	0.10294	4	5547	5440;5500;5547;5595		41.956	25.806	1	394640	+		58164	20486	33336	33337	71136;71137;71138;71139	71138					-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.8743591308594	3	418.875293	1253.60405	0.016774	7.0264E-06	-1.0728	-0.00044937	-1.056	-0.00044234	418.87483569897324	30.383	1.0853	30.383	29.833	30.918	0					97	38	3	0	0	0	0.2912	4	5634	5497;5542;5586;5634		23.016	10.788	1	787850	+		58165	20486	33336	33337	71140;71141;71142;71143	71143					-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.8096313476562	2	627.809302	1253.60405	0.20368	0.00012787	0.28202	0.00017706	0.4857	0.00030493	627.8094452171398	31.419	0.88283	31.419	30.753	31.636	0					84	31	3	0	0	0	0.2912	4	5666	5666;5716;5843;5897		34.932	13.395	1	412020	+		58166	20486	33336	33337	71144;71145;71146;71147	71144					-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.87518310546875	3	418.875293	1253.60405	-0.20232	-8.4748E-05	-0.45217	-0.0001894	-0.65449	-0.00027415	418.87502780673555	31.374	1.1143	31.374	30.753	31.867	0					106	39	4	0	0	0	0.3013	5	5835	5684;5739;5835;5888;5938		22.109	10.478	1	939680	+		58167	20486	33336	33337	71148;71149;71150;71151;71152	71150					-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.8747253417969	3	418.875293	1253.60405	-0.20232	-8.4748E-05	-0.45217	-0.0001894	-0.65449	-0.00027415	418.87502780673555	31.374	1.1143	31.374	30.753	31.867	0					106	39	4	0	0	0	0.32466	1	5787	5787		19.144	10.392	1	939680	+		58168	20486	33336	33337	71153	71153					-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.8733825683594	3	418.875293	1253.60405	0.016774	7.0264E-06	-1.0728	-0.00044937	-1.056	-0.00044234	418.87483569897324	30.383	1.0853	30.383	29.833	30.918	0					97	38	3	0	0	0	0.32787	1	5684	5684		14.171	1.3148	1	787850	+		58169	20486	33336	33337	71154	71154					-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	627.8096313476562	2	627.809302	1253.60405	0.42002	0.00026369	0.012577	7.8957E-06	0.4326	0.00027159	627.8091815193069	30.521	1.0008	30.521	29.888	30.889	0					79	35	3	0	0	0	0.31969	1	5666	5666		34.932	13.395	1	394640	+		58170	20486	33336	33337	71155	71155					-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.8095092773438	2	627.809302	1253.60405	0.12658	7.9465E-05	0.21705	0.00013627	0.34363	0.00021573	627.809383625876	30.514	0.93935	30.542	29.901	30.841	0.027946					56	32	2	0	0	0	0.10294	4	5574	5508;5574;5625;5677		49.554	28.017	1	368230	+		58171	20486	33336	33337	71156;71157;71158;71159	71157					-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.8750915527344	3	418.875293	1253.60405	0.16073	6.7326E-05	-1.1968	-0.0005013	-1.036	-0.00043397	418.8747029112896	30.486	1.1611	30.514	29.735	30.896	0.027948					102	40	3	0	0	0	0.19715	4	5614	5514;5563;5614;5655		31.462	15.187	1	1048700	+		58172	20486	33336	33337	71160;71161;71162;71163	71162					-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.8752136230469	3	418.875293	1253.60405	-0.10095	-4.2284E-05	-0.35548	-0.0001489	-0.45643	-0.00019119	418.8751301594557	31.3	1.0596	31.342	30.793	31.852	0.042364					103	37	4	0	0	0	0.3013	4	5839	5702;5753;5839;5886		22.109	12.345	1	1095400	+		58173	20486	33336	33337	71164;71165;71166;71167	71166					-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.8095703125	2	627.809302	1253.60405	-0.10349	-6.497E-05	0.6024	0.00037819	0.49892	0.00031322	627.8095777598533	31.401	1.4785	31.443	30.173	31.652	0.042366					104	52	3	0	0	0	0.17088	3	5851	5740;5800;5851		41.956	14.518	1	380290	+		58174	20486	33336	33337	71168;71169;71170	71170					-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.8095092773438	2	627.809302	1253.60405	-0.10349	-6.497E-05	0.6024	0.00037819	0.49892	0.00031322	627.8095777598533	31.401	1.4785	31.443	30.173	31.652	0.042366					104	52	3	0	0	0	0.26238	1	5574	5574		49.554	28.017	1	380290	+		58175	20486	33336	33337	71171	71171					-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	627.8095092773438	2	627.809302	1253.60405	0.1159	7.276E-05	0.4209	0.00026424	0.53679	0.000337	627.8094659732101	31.271	1.6517	31.312	29.908	31.559	0.040991					100	58	3	0	0	0	0.073405	7	5535	5485;5535;5585;5641;5688;5812;5860		49.554	28.017	1	442100	+		58176	20486	33336	33337	71172;71173;71174;71175;71176;71177;71178	71173					-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.8752136230469	3	418.875293	1253.60405	-0.13704	-5.7404E-05	-0.92801	-0.00038872	-1.0651	-0.00044613	418.87491599165895	30.392	1.288	30.419	29.578	30.866	0.027157					76	44	2	0	0	0	0.26959	4	5542	5491;5542;5590;5649		24.957	10.788	1	1140700	+		58177	20486	33336	33337	71179;71180;71181;71182	71180					-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	418.8749084472656	3	418.875293	1253.60405	0.055035	2.3053E-05	-0.56577	-0.00023699	-0.51073	-0.00021393	418.87498197356234	31.225	0.95013	31.266	30.798	31.748	0.040991					73	34	3	0	0	0	0.2454	4	5763	5712;5763;5808;5858		27.129	11.59	1	1037100	+		58178	20486	33336	33337	71183;71184;71185;71186	71184					-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	627.809302	1253.60405	0.1159	7.276E-05	0.4209	0.00026424	0.53679	0.000337	627.8094659732101	31.271	1.6517	31.312	29.908	31.559	0.040991	-0.079127	-6.7264E-06	NaN	49.554	100	58	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	442100	+		58179	20486	33336	33337							-0.012606923332214137
YGQLASSFREP	11	Unmodified	_YGQLASSFREP_					0	0	0			REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	REV__ENST00000376281.8_1_9:86593159-86595479:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	418.875293	1253.60405	0.055035	2.3053E-05	-0.56577	-0.00023699	-0.51073	-0.00021393	418.87498197356234	31.225	0.95013	31.266	30.798	31.748	0.040991	-0.061315	-0.00017376	NaN	27.129	73	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1037100	+		58180	20486	33336	33337							-0.012606923332214137
YGRAGLVQ	8	Unmodified	_YGRAGLVQ_					0	0	0			REV__ENSG00000213420|ENST00000292377|GPC2	REV__ENSG00000213420|ENST00000292377|GPC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.55584716796875	2	432.240327	862.466101	-0.34143	-0.00014758	1.7712	0.0007656	1.4298	0.00061802	432.24104489201005	34.354	0.39529	34.421	34.128	34.523	0.067719					21	13	2	0	0	0	0.34319	1	6711	6711		5.7604	0	1	160430	+		58181	19038	33337	33338	71187	71187					0.029366489288122466
YGRIEILSGF	10	Unmodified	_YGRIEILSGF_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.8139038085938	2	577.813856	1153.61316	0.45302	0.00026176	-0.011774	-6.8029E-06	0.44125	0.00025496	577.8137542038404	65.711	0.80586	65.711	65.405	66.211	0					57	28	3	0	0	0	0.23397	1	16419	16419		28.495	0	1	490780			58182	4671	33338	33339	71188	71188					0.04249701023104535
YGRIEILSGF	10	Unmodified	_YGRIEILSGF_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.8135986328125	2	577.813856	1153.61316	0.22906	0.00013235	0.26998	0.000156	0.49904	0.00028835	577.8138589253981	65.559	0.78433	65.648	65.27	66.055	0.088882					58	28	3	0	0	0	0.093201	1	16343	16343		49.554	0	1	673290			58183	4671	33338	33339	71189	71189					0.04249701023104535
YGRIEILSGF	10	Unmodified	_YGRIEILSGF_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.8139038085938	2	577.813856	1153.61316	0.41311	0.0002387	0.027388	1.5825E-05	0.4405	0.00025453	577.8137325151151	65.682	0.65367	65.671	65.348	66.002	-0.011337					61	23	4	0	0	0	0.18128	1	16426	16426		34.932	5.0915	1	878390			58184	4671	33338	33339	71190	71190					0.04249701023104535
YGRKWAGEI	9	Unmodified	_YGRKWAGEI_					0	0	0			REV__nc|ENSG00000099139|Q92824-2|PCSK5	REV__nc|ENSG00000099139|Q92824-2|PCSK5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3306274414062	2	540.285266	1078.55598	0.45385	0.00024521	-1.1676	-0.00063081	-0.71371	-0.00038561	540.2853586541214	81.058	0.82289	81.058	80.681	81.504	0					114	39	4	0	0	0	0.21389	1	21189	21189		25.399	12.357	1	663710	+		58185	14121	33339	33340	71191	71191					0.019842785373839433
YGRLPGTIW	9	Unmodified	_YGRLPGTIW_					0	0	0		ENSG00000169991|ENST00000455833|IFFO2	ENSG00000169991|ENST00000455833|IFFO2	ENSG00000169991|ENST00000455833|IFFO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8170166015625	2	531.790184	1061.56581	0.34971	0.00018597	0.18055	9.6014E-05	0.53026	0.00028199	531.7902037924807	79.965	0.56637	80.027	79.8	80.366	0.061409					38	20	3	0	0	0	0.2451	1	20794	20794		15.847	0	1	317200			58186	6411	33340	33341	71192	71192					0.037494665427630025
YGSGRPAL	8	Unmodified	_YGSGRPAL_					0	0	0			REV__ENST00000530142.5_1_8:145581690-145582740:-|nuORF	REV__ENST00000530142.5_1_8:145581690-145582740:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.25750732421875	2	410.719227	819.423902	0.32564	0.00013375	-2.1721	-0.00089211	-1.8464	-0.00075836	410.7185342921851	84.499	0.2067	84.486	84.328	84.535	-0.01284					9	7	2	0	0	0	0.3439	1	22110	22110		2.8892	0	1	48137	+		58187	18189	33341	33342	71193	71193					0.006966735204173347
YGSKPLNI	8	Unmodified	_YGSKPLNI_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.6358947753906	2	446.25036	890.486168	0.32518	0.00014511	-0.78551	-0.00035054	-0.46033	-0.00020542	446.24996473986135	36.196	0.63686	36.279	35.9	36.537	0.082359					31	22	2	0	0	0	0.33661	1	7285	7285		9.3831	4.6271	1	290280			58188	702	33342	33343	71194	71194					0.03654399868753444
YGSPVAATGFP	11	Unmodified	_YGSPVAATGFP_					0	0	0			REV__nc|ENSG00000173406|O75553-3|DAB1	REV__nc|ENSG00000173406|O75553-3|DAB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7637939453125	2	533.763832	1065.51311	0.47008	0.00025091	-0.33003	-0.00017616	0.14005	7.4752E-05	533.7635836520816	43.251	0.86714	43.251	42.678	43.545	0					55	31	2	0	0	0	0.26547	1	9397	9397		27.629	4.8925	1	564980	+		58189	17780	33343	33344	71195	71195					-0.017025363107222802
YGSPVAATGFP	11	Unmodified	_YGSPVAATGFP_					0	0	0			REV__nc|ENSG00000173406|O75553-3|DAB1	REV__nc|ENSG00000173406|O75553-3|DAB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7836303710938	2	533.763832	1065.51311	0.2033	0.00010851	1.2727	0.00067933	1.476	0.00078785	533.7644542019353	42.428	0.54072	42.428	42.193	42.734	0					34	19	2	0	0	0	0.23599	1	9278	9278		41.84	7.4379	1	516100	+		58190	17780	33343	33344	71196	71196					-0.017025363107222802
YGSPVAATGFP	11	Unmodified	_YGSPVAATGFP_					0	0	0			REV__nc|ENSG00000173406|O75553-3|DAB1	REV__nc|ENSG00000173406|O75553-3|DAB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7835693359375	2	533.763832	1065.51311	0.31373	0.00016746	0.21492	0.00011472	0.52865	0.00028218	533.7639094064215	42.829	1.3404	42.914	41.959	43.299	0.085197					87	48	2	0	0	0	0.21363	1	9212	9212		39.95	5.548	1	687460	+		58191	17780	33343	33344	71197	71197					-0.017025363107222802
YGSPVAATGFP	11	Unmodified	_YGSPVAATGFP_					0	0	0			REV__nc|ENSG00000173406|O75553-3|DAB1	REV__nc|ENSG00000173406|O75553-3|DAB1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7640991210938	2	533.763832	1065.51311	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.899	1	42.99	42.49	43.49	0.091362								0	0	0	0.14376	1	9366	9366		39.95	0	1		+		58192	17780	33343	33344	71198	71198					-0.017025363107222802
YGSSLGRCNPV	11	Unmodified	_YGSSLGRCNPV_					0	0	0			REV__ENST00000447116.6_1_3:40523427-40523760:+|nuORF	REV__ENST00000447116.6_1_3:40523427-40523760:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.259765625	2	576.776948	1151.53934	0.29397	0.00016955	1.5438	0.00089044	1.8378	0.00106	576.7780350526427	32.815	0.26178	32.815	32.662	32.924	0					12	8	2	0	0	0	0.33085	1	6328	6328		6.2058	1.4498	1	183530	+		58193	21087	33344	33345	71199	71199					-0.030365904108975883
YGTEAIIEPA	10	Unmodified	_YGTEAIIEPA_					0	0	0			REV__nc|ENSG00000133083|O15075-3|DCLK1	REV__nc|ENSG00000133083|O15075-3|DCLK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8065185546875	2	532.268947	1062.52334	0.061363	3.2661E-05	-4.2907	-0.0022838	-4.2293	-0.0022511	532.2666220511463	14.466	0.30366	14.361	14.212	14.516	-0.10466					15	9	2	0	0	0	0.32033	1	779	779		3.5965	0	1	23660	+		58194	15604	33345	33346	71200	71200					-0.005419733761300449
YGTRYGASL	9	Unmodified	_YGTRYGASL_					0	0	0		ENST00000487233.1_1_2:217363570-217364184:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.2481384277344	2	494.248349	986.482145	-0.52665	-0.0002603	0.48222	0.00023833	-0.044436	-2.1963E-05	494.24844074289604	34.474	1.1347	34.474	34.22	35.354	0					78	40	3	0	0	0	0.003673	2	6775	6775;6823		96.936	50.915	1	799050			58195	7997	33346	33347	71201;71202	71201					-0.01163689624968356
YGTRYGASL	9	Unmodified	_YGTRYGASL_					0	0	0		ENST00000487233.1_1_2:217363570-217364184:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.2483215332031	2	494.248349	986.482145	-0.54253	-0.00026815	0.34633	0.00017117	-0.1962	-9.6971E-05	494.248378269739	34.352	0.99258	34.418	34.149	35.142	0.06636					85	35	5	0	0	0	0.0028032	2	6776	6732;6776		103.82	53.891	1	859920			58196	7997	33346	33347	71203;71204	71204					-0.01163689624968356
YGTRYGASL	9	Unmodified	_YGTRYGASL_					0	0	0		ENST00000487233.1_1_2:217363570-217364184:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.2485046386719	2	494.248349	986.482145	0.072899	3.603E-05	0.19754	9.7634E-05	0.27044	0.00013366	494.24835166509075	34.255	0.45105	34.321	34.099	34.55	0.066704					30	15	2	0	0	0	0.0040516	1	6761	6761		93.938	44.005	1	961270			58197	7997	33346	33347	71205	71205					-0.01163689624968356
YGTTFGPAGPY	11	Unmodified	_YGTTFGPAGPY_					0	0	0			REV__nc|ENSG00000122515|Q8NF64-3|ZMIZ2	REV__nc|ENSG00000122515|Q8NF64-3|ZMIZ2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.7977905273438	2	565.761289	1129.50803	0.43518	0.00024621	0.3226	0.00018251	0.75778	0.00042872	565.7617400307629	66.474	0.68591	66.557	66.219	66.905	0.083824					50	24	3	0	0	0	0.32293	1	16625	16625		18.146	0	1	262260	+		58198	15160	33347	33348	71206	71206					-0.05154840173327102
YGTYYVDHL	9	Unmodified	_YGTYYVDHL_					0	0	0		nc|ENSG00000081026|Q5TCQ9-3|MAGI3;ENSG00000081026|ENST00000307546|MAGI3;MAGI3|p.D777Vfs*17|1|0.22|ENSG00000081026|chr1:113651096-113651096|A/-|frameshift_variant	nc|ENSG00000081026|Q5TCQ9-3|MAGI3	nc|ENSG00000081026|Q5TCQ9-3|MAGI3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.7979125976562	2	565.761289	1129.50803	0.36396	0.00020591	0.26722	0.00015119	0.63118	0.0003571	565.7617728810227	66.629	0.75558	66.629	66.266	67.022	0					52	26	3	0	0	0	0.22596	1	16675	16675		15.847	0	1	218830			58199	1175	33348	33349	71207	71207					-0.051548401733498395
YGVLCIQEYR	10	Unmodified	_YGVLCIQEYR_					0	0	0		ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	ENSG00000149289|ENST00000278590|ZC3H12C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.3165283203125	2	622.310623	1242.60669	0.080422	5.0047E-05	0.40789	0.00025383	0.48831	0.00030388	622.309552216226	64.896	1.8184	64.885	64.043	65.861	-0.011337					260	66	6	0	0	0	0.21126	1	15956	15956		31.268	3.6395	1	6307600			58200	4857	33349	33350	71208	71208					-0.004905601999553255
YGVPFEKLVYM	11	Unmodified	_YGVPFEKLVYM_					0	0	0			REV__ENST00000525178.5_1_11:108217294-108236232:+|nuORF	REV__ENST00000525178.5_1_11:108217294-108236232:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	449.84710693359375	3	449.233542	1344.6788	-0.1097	-4.928E-05	0.57777	0.00025955	0.46807	0.00021027	449.5679515083686	14.318	0.3028	14.252	14.124	14.427	-0.066068					18	10	3	0	0	0	0.33336	1	653	653		1.1098	0	1	24750	+		58201	21948	33350	33351	71209	71209					0.02024354153763852
YGVPFEKLVYM	11	Unmodified	_YGVPFEKLVYM_					0	0	0			REV__ENST00000525178.5_1_11:108217294-108236232:+|nuORF	REV__ENST00000525178.5_1_11:108217294-108236232:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	449.233542	1344.6788	-0.14546	-6.5347E-05	1.1813	0.00053068	1.0358	0.00046533	449.23383635395646	14.359	0.26287	14.255	14.105	14.368	-0.10466	0.001348	0.00054437	NaN	1.1098	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45478	+		58202	21948	33350	33351							0.02024354153763852
YGVPRRPRR	9	Unmodified	_YGVPRRPRR_					0	0	0			REV__ENST00000357066.7_1_19:2085254-2096298:-|nuORF	REV__ENST00000357066.7_1_19:2085254-2096298:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2330322265625	2	578.844148	1155.67374	0.6441	0.00037283	-1.0332	-0.00059803	-0.38906	-0.0002252	578.8436408896514	32.08	0.32853	32.122	32.053	32.382	0.042366					17	11	2	0	0	0	0.26117	1	6061	6061		2.3027	0.24298	1	120520	+		58203	20208	33351	33352	71210	71210					0.10213275916703424
YGVQGLLTF	9	Unmodified	_YGVQGLLTF_					0	0	0		nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8	nc|ENSG00000197150|Q9NUT2-5|ABCB8	nc|ENSG00000197150|Q9NUT2-5|ABCB8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.2885437011719	2	499.271293	996.528032	0.59777	0.00029845	0.36189	0.00018068	0.95966	0.00047913	499.27134283071695	48.226	0.79018	48.226	47.959	48.749	0					62	27	3	0	0	0	0.14961	1	10981	10981		34.402	0	1	2421200			58204	7936	33352	33353	71211	71211					0.02962955557291025
YGYKASGAFLL	11	Unmodified	_YGYKASGAFLL_					0	0	0			REV__ENST00000472941.5_1_3:167506900-167506981:+|nuORF	REV__ENST00000472941.5_1_3:167506900-167506981:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.3170776367188	2	595.316232	1188.61791	0.077278	4.6005E-05	0.72553	0.00043192	0.80281	0.00047793	595.3165000402591	61.599	0.63077	61.59	61.324	61.955	-0.0088005					53	22	4	0	0	0	0.21521	1	15135	15135		29.841	3.5724	1	600960	+		58205	21377	33353	33354	71212	71212					0.031145851658493484
YGYKASGAFLL	11	Unmodified	_YGYKASGAFLL_					0	0	0			REV__ENST00000472941.5_1_3:167506900-167506981:+|nuORF	REV__ENST00000472941.5_1_3:167506900-167506981:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	595.316232	1188.61791	0.10513	6.2587E-05	0.64001	0.00038101	0.74515	0.0004436	595.3165271659407	61.542	0.56697	61.639	61.385	61.952	0.096985	0.022851	-5.0157E-06	NaN	29.841	51	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	643520	+		58206	21377	33353	33354							0.031145851658493484
YGYKASGAFLL	11	Unmodified	_YGYKASGAFLL_					0	0	0			REV__ENST00000472941.5_1_3:167506900-167506981:+|nuORF	REV__ENST00000472941.5_1_3:167506900-167506981:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	595.316232	1188.61791	0.077278	4.6005E-05	0.72553	0.00043192	0.80281	0.00047793	595.3165000402591	61.599	0.63077	61.59	61.324	61.955	-0.0088005	-0.026422	9.6805E-05	NaN	29.841	53	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	600960	+		58207	21377	33353	33354							0.031145851658493484
YGYQPHLAL	9	Unmodified	_YGYQPHLAL_					0	0	0			REV__LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	REV__LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.8270263671875	2	531.274367	1060.53418	0.151	8.0223E-05	-1.3295	-0.00070631	-1.1785	-0.00062609	531.2740653882508	12.83	0.22783	12.83	12.724	12.952	0					14	7	3	0	0	0	0.26145	1	220	220		2.0598	1.6014	1	46463	+		58208	13905	33354	33355	71213	71213					0.0063347378879825555
YGYSLKGI	8	Unmodified	_YGYSLKGI_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7703857421875	2	450.744911	899.475269	0.46872	0.00021127	0.32316	0.00014566	0.79189	0.00035694	450.74507002404243	47.367	0.42014	47.367	47.187	47.608	0					22	14	2	0	0	0	0.25582	1	10761	10761		41.84	24.897	1	454110			58209	5063	33355	33356	71214	71214					0.021509974944933674
YGYSLKGI	8	Unmodified	_YGYSLKGI_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.7704772949219	2	450.744911	899.475269	0.83173	0.0003749	0.25215	0.00011365	1.0839	0.00048855	450.7450246119729	47.274	0.42388	47.328	47.117	47.541	0.054375					26	15	2	0	0	0	0.27213	1	10704	10704		43.858	19.184	1	311420			58210	5063	33355	33356	71215	71215					0.021509974944933674
YGYSLKGI	8	Unmodified	_YGYSLKGI_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	450.744911	899.475269	0.13471	6.072E-05	0.97438	0.0004392	1.1091	0.00049992	450.7453588685819	47.213	0.42705	47.265	47.088	47.515	0.052574	-0.05494	0.00020442	NaN	49.933	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324240			58211	5063	33355	33356							0.021509974944933674
YGYTSFDTF	9	Unmodified	_YGYTSFDTF_					0	0	0		nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A;SCN8A|p.F769Lfs*11|1|0.04|ENSG00000196876|chr12:51751529-51751530|-/ATTAA|frameshift_variant;nc|ENSG00000196876|Q9UQD0-4|SCN8A;SCN1A|p.A1622Pfs*3|1|0.23|ENSG00000144285|chr2:165992415-165992415|A/-|frameshift_variant;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;SCN9A|p.M1532*|1|0.27|ENSG00000169432|chr2:166204135-166204135|T/-|frameshift_variant;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000144285|P35498-3|SCN1A;SCN9A|p.M1532*|1|0.27|ENSG00000169432|chr2:166204135-166204135|T/-|frameshift_variant	nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.323974609375	2	550.732197	1099.44984	0.24004	0.0001322	-0.14384	-7.9216E-05	0.096202	5.2981E-05	550.7324153124947	59.508	0.29476	59.508	59.326	59.621	0					15	9	2	0	0	0	0.24688	1	14525	14525		14.838	0	1	173410			58212	7910;5071;4573;6358	33356	33357	71216	71216					-0.09590521818631714
YGYVYFRQVR	10	Unmodified	_YGYVYFRQVR_					0	0	0		ENST00000487662.1_1_3:57643405-57651906:-|nuORF;ENSG00000174839|ENST00000311128|DENND6A	ENST00000487662.1_1_3:57643405-57651906:-|nuORF	ENST00000487662.1_1_3:57643405-57651906:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.7701110839844	3	450.903295	1349.68806	0.40348	0.00018193	-0.43347	-0.00019545	-0.029983	-1.3519E-05	451.2371630371413	48.22	0.55894	48.22	48.077	48.636	0					25	19	2	0	0	0	0.31746	1	11054	11054		3.5871	0	1	191010			58213	6821	33357	33358	71217	71217					0.027198835543003952
YGYYHCKDCN	10	Unmodified	_YGYYHCKDCN_					0	0	0		ENSG00000182223|ENST00000327939|ZAR1	ENSG00000182223|ENST00000327939|ZAR1	ENSG00000182223|ENST00000327939|ZAR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.5633239746094	3	422.495319	1264.46413	0.20441	8.6363E-05	-0.15254	-6.4447E-05	0.051871	2.1915E-05	422.49535936459137	54.148	0.43419	54.148	53.914	54.348	0					47	15	5	0	0	0	0.32112	1	12808	12808		0.77653	0.61721	1	454360			58214	7282	33358	33359	71218	71218					-0.15752515933604627
YHAHMWKKF	9	Unmodified	_YHAHMWKKF_					0	0	0			REV__ENSG00000146350|ENST00000398212|TBC1D32	REV__ENSG00000146350|ENST00000398212|TBC1D32	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3125610351562	2	624.310761	1246.60697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.326	1	84.309	83.809	84.809	-0.016823								0	0	0	0.264	1	22089	22089		1.8442	0	1		+		58215	16343	33359	33360	71219	71219					-0.006470956894418123
YHCNDCGED	9	Unmodified	_YHCNDCGED_					0	0	0		ENSG00000184939|ENST00000563169|ZFP90;ENST00000571720.2_1_16:68596924-68598598:+|nuORF	ENSG00000184939|ENST00000563169|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.6610717773438	2	528.163299	1054.31204	0.32181	0.00016997	0.96693	0.0005107	1.2887	0.00068066	528.6639253565213	95.349	0.072853	95.432	95.416	95.489	0.082779					8	6	2	0	0	0	0.26282	1	25474	25474		0	0	1	39648			58216	7485	33360	33361	71220	71220					-0.21293916681179326
YHCTIIWF	8	Unmodified	_YHCTIIWF_					0	0	0		ENST00000565488.5_1_1:108678460-108678724:-|nuORF	ENST00000565488.5_1_1:108678460-108678724:-|nuORF	ENST00000565488.5_1_1:108678460-108678724:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3299560546875	2	541.760038	1081.50552	0.72801	0.0003944	1.2346	0.00066885	1.9626	0.0010633	541.7607500637171	47.609	0.39156	47.609	47.38	47.771	0					21	12	2	0	0	0	0.34147	1	10757	10757		11.114	0.93107	1	232380			58217	11965	33361	33362	71221	71221					-0.03196967111989579
YHDKVSLS	8	Unmodified	_YHDKVSLS_					0	0	0			REV__ENST00000491832.6_1_6:56955645-56989586:+|nuORF	REV__ENST00000491832.6_1_6:56955645-56989586:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7353210449219	2	474.742899	947.471246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.886	1	15.775	15.275	16.275	-0.11095								0	0	0	0.34229	1	1163	1163		18.135	1.1927	1		+		58218	20388	33362	33363	71222	71222					-0.004590919992324416
YHELRYRQ	8	Unmodified	_YHELRYRQ_					0	0	0			REV__nc|ENSG00000086848|Q9H6U8|ALG9	REV__nc|ENSG00000086848|Q9H6U8|ALG9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.2847290039062	2	582.799072	1163.58359	-0.0058146	-3.3887E-06	0.97343	0.00056732	0.96762	0.00056393	582.7993417895199	14.566	0.22746	14.566	14.448	14.676	0					13	7	2	0	0	0	0.34437	1	748	748		0.69038	0	1	27063	+		58219	13981	33363	33364	71223	71223					0.00834181797608835
YHFYFYLAP	9	Unmodified	_YHFYFYLAP_					0	0	0			REV__ENSG00000140832|ENST00000268485|MARVELD3	REV__ENSG00000140832|ENST00000268485|MARVELD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.9032287597656	3	407.530687	1219.57023	-0.26572	-0.00010829	2.2895	0.00093305	2.0238	0.00082476	407.53165536440446	25.812	0.62691	25.774	25.5	26.126	-0.038671					31	21	2	0	0	0	0.25843	1	4117	4117		2.9952	0	1	189700	+		58220	16052	33364	33365	71224	71224					-0.030770690343388196
YHGLITKV	8	Unmodified	_YHGLITKV_					0	0	0			REV__ENST00000400585.6_1_22:17978448-17978574:+|nuORF	REV__ENST00000400585.6_1_22:17978448-17978574:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.7881164550781	2	465.774003	929.533452	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.631	1	50.651	50.151	51.151	0.020691								0	0	0	0.34734	1	11747	11747		15.847	1.9411	1		+		58221	20703	33365	33366	71225	71225					0.06586679139752505
YHGNPYALPA	10	Unmodified	_YHGNPYALPA_					0	0	0			REV__ENSG00000173065|ENST00000581407|FAM222B	REV__ENSG00000173065|ENST00000581407|FAM222B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7676391601562	2	551.769448	1101.52434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.407	1	12.407	11.907	12.907	0								0	0	0	0.38126	1	117	117		1.6526	0.85899	1		+		58222	17757	33366	33367	71226	71226					-0.022357142165674304
YHKELPENYK	10	Unmodified	_YHKELPENYK_					0	0	0		nc|ENSG00000170917|P53370-2|NUDT6;ENSG00000170917|ENST00000304430|NUDT6	nc|ENSG00000170917|P53370-2|NUDT6	nc|ENSG00000170917|P53370-2|NUDT6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.2072448730469	3	440.890944	1319.651	-0.0050091	-2.2085E-06	3.8188	0.0016837	3.8138	0.0016815	440.89306215418617	26.496	0.39662	26.457	26.178	26.575	-0.038671					23	13	2	0	0	0	0.31746	1	4313	4313		10.315	4.5318	1	98441			58223	6496	33367	33368	71227	71227					0.003961672179002562
YHKMYGLLSI	10	Unmodified	_YHKMYGLLSI_					0	0	0			REV__ENSG00000153147|ENST00000283131|SMARCA5	REV__ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.8065795898438	2	612.825909	1223.63727	0.61638	0.00037774	1.1726	0.00071863	1.789	0.0010964	612.8265268167577	60.542	0.51192	60.533	60.326	60.838	-0.0094566					29	18	2	0	0	0	0.24105	1	14844	14844		27.629	0.74515	1	712220	+		58224	16611	33368	33369	71228	71228					0.034392181851217174
YHKYQSNSIQ	10	Unmodified	_YHKYQSNSIQ_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000488459.1_1_X:53560966-53561563:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.327880859375	2	634.306926	1266.5993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.01	1	100.01	99.506	100.51	-0.006897								0	0	0	0.36441	1	26772	26772		8.7454	0.58988	1				58225	1286	33369	33370	71229	71229					-0.023335764760076927
YHLLAEKIYK	10	Unmodified	_YHLLAEKIYK_					0	0	0		ENSG00000100393|ENST00000263253|EP300;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.9421081542969	3	426.579929	1276.71796	-0.05406	-2.3061E-05	-2.9455	-0.0012565	-2.9996	-0.0012796	426.57842006520593	37.671	0.29507	37.768	37.604	37.899	0.097527					16	10	2	0	0	0	0.31746	1	7753	7753		10.315	4.1234	1	158180			58226	1586	33370	33371	71230	71230					0.09066822499653426
YHLPQSIAIYR	11	Unmodified	_YHLPQSIAIYR_					0	0	0			REV__ENSG00000171014|ENST00000307033|OR4D5	REV__ENSG00000171014|ENST00000307033|OR4D5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.7947692871094	3	454.250583	1359.72992	0.25686	0.00011668	1.7366	0.00078887	1.9935	0.00090555	454.25151400135786	53.329	0.21278	53.329	53.228	53.441	0					11	7	2	0	0	0	0.33094	1	12588	12588		7.4771	3.3604	1	145770	+		58227	17614	33371	33372	71231	71231					0.06444439242841327
YHLVRAILE	9	Unmodified	_YHLVRAILE_					0	0	0		ENSG00000175066|ENST00000392993|GK5;ENST00000492097.5_1_3:141882642-141900319:-|nuORF;nc|ENSG00000175066|Q6ZS86-3|GK5	ENSG00000175066|ENST00000392993|GK5	ENSG00000175066|ENST00000392993|GK5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3134155273438	2	557.324391	1112.63423	0.78966	0.0004401	-1.1487	-0.00064022	-0.35907	-0.00020012	557.3238161197316	56.139	0.16774	56.12	55.965	56.133	-0.019081					8	5	2	0	0	0	0.25989	1	13449	13449		14.838	0	1	174280			58228	6836	33372	33373	71232	71232					0.08241711122627748
YHNIETSNFP	10	Unmodified	_YHNIETSNFP_					0	0	0		nc|ENSG00000069431|O60706|ABCC9;ENSG00000069431|ENST00000261200|ABCC9;ABCC8|p.Q349Kfs*10|1|0.2|ENSG00000006071|chr11:17453250-17453250|G/-|frameshift_variant;ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8	nc|ENSG00000069431|O60706|ABCC9	nc|ENSG00000069431|O60706|ABCC9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.264892578125	2	611.280377	1220.5462	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.393	1	49.438	48.938	49.938	0.044891								0	0	0	0.37044	1	11376	11376		6.2058	0.47393	1				58229	906	33373	33374	71233	71233					-0.055249542586807365
YHRCHEAF	8	Unmodified	_YHRCHEAF_					0	0	0			REV__ENST00000492476.1_1_1:6271125-6272816:+|nuORF	REV__ENST00000492476.1_1_1:6271125-6272816:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.7665405273438	2	531.732343	1061.45013	0.76349	0.00040597	0.55934	0.00029742	1.3228	0.00070339	531.7324764539409	47.861	1.1509	47.909	47.594	48.745	0.04752					126	42	4	0	0	0	0.34218	1	11120	11120		5.2307	5.2307	1	12374000	+		58230	16806	33374	33375	71234	71234					-0.07813380579773366
YHRLRSDWL	9	Unmodified	_YHRLRSDWL_					0	0	0			REV__ENSG00000167646|ENST00000524407|DNAAF3	REV__ENSG00000167646|ENST00000524407|DNAAF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.182861328125	3	415.887756	1244.64144	-0.18048	-7.5061E-05	-2.7339	-0.001137	-2.9144	-0.001212	416.22113003692056	25.397	0.11207	25.365	25.294	25.406	-0.031408					5	3	2	0	0	0	0.2615	1	4044	4044		2.4985	0.21571	1	13077	+		58231	17398	33375	33376	71235	71235					0.02890443723026692
YHSLLWQFF	9	Unmodified	_YHSLLWQFF_					0	0	0			REV__ENSG00000174327|ENST00000308027|SLC16A13	REV__ENSG00000174327|ENST00000308027|SLC16A13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5501403808594	3	414.209836	1239.60768	0.51841	0.00021473	-1.1231	-0.00046518	-0.60464	-0.00025045	414.2093613764634	20.261	0.36955	20.208	19.933	20.302	-0.05291					15	13	2	0	0	0	0.26228	1	2453	2453		1.1933	0	1	120360	+		58232	17826	33376	33377	71236	71236					-0.002539777687388778
YHSLPIIIK	9	Unmodified	_YHSLPIIIK_					0	0	0		ENSG00000083457|ENST00000263087|ITGAE	ENSG00000083457|ENST00000263087|ITGAE	ENSG00000083457|ENST00000263087|ITGAE	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2953491210938	2	542.331685	1082.64882	0.72585	0.00039365	1.5194	0.00082401	2.2452	0.0012177	542.3325542950482	47.568	0.13038	47.616	47.539	47.669	0.047523					6	4	2	0	0	0	0.25066	1	10787	10787		11.64	0	1	96243			58233	1221	33377	33378	71237	71237					0.11079783270747612
YHTWFPLT	8	Unmodified	_YHTWFPLT_					0	0	0			REV__CX3CR1|p.E279Rfs*10|1|0.13|ENSG00000168329|chr3:39265676-39265676|A/-|frameshift_variant	REV__CX3CR1|p.E279Rfs*10|1|0.13|ENSG00000168329|chr3:39265676-39265676|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.3207397460938	2	532.763635	1063.51272	0.526	0.00028023	-1.1823	-0.00062989	-0.65632	-0.00034966	532.7632644532144	61.067	0.45527	61.067	60.908	61.363	0					19	16	2	0	0	0	0.32778	1	15036	15036		14.582	0	1	624210	+		58234	13291	33378	33379	71238	71238					-0.016499112399060323
YHTWFPLT	8	Unmodified	_YHTWFPLT_					0	0	0			REV__CX3CR1|p.E279Rfs*10|1|0.13|ENSG00000168329|chr3:39265676-39265676|A/-|frameshift_variant	REV__CX3CR1|p.E279Rfs*10|1|0.13|ENSG00000168329|chr3:39265676-39265676|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3204956054688	2	532.763635	1063.51272	-0.0073247	-3.9023E-06	0.18886	0.00010062	0.18154	9.6716E-05	532.7637718223037	61.428	0.56792	61.525	61.299	61.867	0.096989					31	20	2	0	0	0	0.32778	1	15027	15027		20.871	7.3633	1	336840	+		58235	13291	33378	33379	71239	71239					-0.016499112399060323
YHVCPNYTNF	10	Unmodified	_YHVCPNYTNF_					0	0	0		ENST00000529484.5_1_11:117061404-117064733:+|nuORF;ENSG00000149577|ENST00000324225|SIDT2;nc|ENSG00000149577|Q8NBJ9-2|SIDT2	ENST00000529484.5_1_11:117061404-117064733:+|nuORF	ENST00000529484.5_1_11:117061404-117064733:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.848876953125	2	629.271498	1256.52844	0.3244	0.00020414	-0.24761	-0.00015581	0.076798	4.8327E-05	629.2714107875629	43.598	1.0566	43.598	43.149	44.206	0					100	38	3	0	0	0	0.3144	1	9645	9645		13.042	0	1	561920			58236	4879	33379	33380	71240	71240					-0.08955992785195122
YHVCPNYTNF	10	Unmodified	_YHVCPNYTNF_					0	0	0		ENST00000529484.5_1_11:117061404-117064733:+|nuORF;ENSG00000149577|ENST00000324225|SIDT2;nc|ENSG00000149577|Q8NBJ9-2|SIDT2	ENST00000529484.5_1_11:117061404-117064733:+|nuORF	ENST00000529484.5_1_11:117061404-117064733:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.2716674804688	2	629.271498	1256.52844	0.27531	0.00017324	-0.081995	-5.1597E-05	0.19331	0.00012165	629.2714971914969	43.218	1.1768	43.295	42.798	43.975	0.077515					107	42	3	0	0	0	0.34795	1	9422	9422		13.042	0	1	601590			58237	4879	33379	33380	71241	71241					-0.08955992785195122
YIAAISARF	9	Unmodified	_YIAAISARF_					0	0	0		CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.8113098144531	2	506.284734	1010.55492	0.40289	0.00020398	-0.19647	-9.9469E-05	0.20642	0.00010451	506.2843788788299	53.078	0.32354	53.078	52.987	53.311	0					22	11	3	0	0	0	0.15943	1	12579	12579		39.95	13.066	1	591890			58238	241	33380	33381	71242	71242					0.05006064168469493
YIAAISARF	9	Unmodified	_YIAAISARF_					0	0	0		CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.8113708496094	2	506.284734	1010.55492	0.38268	0.00019374	-0.26977	-0.00013658	0.11291	5.7167E-05	506.2841179390425	53.202	0.31607	53.193	53.085	53.401	-0.0096054					18	11	2	0	0	0	0.13643	1	12601	12601		38.176	13.294	1	725180			58239	241	33380	33381	71243	71243					0.05006064168469493
YIANIRLVL	9	Unmodified	_YIANIRLVL_					0	0	0			REV__ENSG00000146966|ENST00000496613|DENND2A	REV__ENSG00000146966|ENST00000496613|DENND2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.717529296875	2	537.837134	1073.65972	-0.82592	-0.00044421	-0.35073	-0.00018864	-1.1767	-0.00063285	537.8368178850948	35.018	0.42193	35.018	34.805	35.227	0					23	14	2	0	0	0	0.25526	1	6947	6947		7.9102	0	1	158350	+		58240	16367	33381	33382	71244	71244					0.12583185645030426
YIARAVMLFA	10	Unmodified	_YIARAVMLFA_					0	0	0		ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.8231201171875	2	577.823169	1153.63179	0.13556	7.8332E-05	0.30582	0.00017671	0.44138	0.00025504	577.8232888326295	49.321	1.1267	49.353	48.71	49.837	0.032043					92	40	4	0	0	0	0.33268	1	11416	11416		15.847	1.0089	1	938480			58241	2880	33382	33383	71245	71245					0.06111539393282328
YIARIIKLYA	10	Unmodified	_YIARIIKLYA_					0	0	0			REV__L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|107|2|sense	REV__L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|107|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.5887145996094	3	408.588536	1222.74378	-0.24637	-0.00010067	0.69267	0.00028302	0.44629	0.00018235	408.5886224086611	42.178	1.2407	42.178	41.875	43.116	0					61	44	2	0	0	0	0.3994	1	9154	9154		3.5871	1.5011	1	592430	+		58242	22811	33383	33384	71246	71246					0.14131716741962919
YIARIIKLYA	10	Unmodified	_YIARIIKLYA_					0	0	0			REV__L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|107|2|sense	REV__L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|107|2|sense	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	408.588536	1222.74378	-0.24637	-0.00010067	0.69267	0.00028302	0.44629	0.00018235	408.5886224086611	42.178	1.2407	42.178	41.875	43.116	0	0.22636	0.00018445	NaN	3.5871	61	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	592430	+		58243	22811	33383	33384							0.14131716741962919
YIARIIKLYA	10	Unmodified	_YIARIIKLYA_					0	0	0			REV__L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|107|2|sense	REV__L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|107|2|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	408.588536	1222.74378	0.10696	4.3703E-05	0.46193	0.00018874	0.56889	0.00023244	408.58845837611705	41.778	1.1863	41.868	41.77	42.956	0.090248	-0.083253	-9.8376E-05	NaN	3.5871	55	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	875840	+		58244	22811	33383	33384							0.14131716741962919
YIARIIKLYA	10	Unmodified	_YIARIIKLYA_					0	0	0			REV__L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|107|2|sense	REV__L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|107|2|sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	408.588536	1222.74378	0.24781	0.00010125	0.35023	0.0001431	0.59804	0.00024435	408.5885220020606	41.712	1.0494	41.809	41.7	42.749	0.096622	-0.14311	-0.0002353	NaN	3.5871	71	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	777580	+		58245	22811	33383	33384							0.14131716741962919
YIASLRAFGQP	11	Unmodified	_YIASLRAFGQP_					0	0	0			REV__ENSG00000203879|ENST00000447750|GDI1	REV__ENSG00000203879|ENST00000447750|GDI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5644836425781	3	408.224146	1221.65061	0.15451	6.3074E-05	0.75593	0.00030859	0.91044	0.00037166	408.224199176759	35.968	0.27938	36.05	35.954	36.233	0.082355					11	9	2	0	0	0	0.32719	1	7287	7287		14.218	10.102	1	100120	+		58246	18910	33384	33385	71247	71247					0.04864792288708486
YIATQGPLKS	10	Unmodified	_YIATQGPLKS_					0	0	0		ENST00000475012.5_1_3:62203523-62278979:+|nuORF;nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG	ENST00000475012.5_1_3:62203523-62278979:+|nuORF	ENST00000475012.5_1_3:62203523-62278979:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7819213867188	2	539.300581	1076.58661	0.62102	0.00033492	0.66683	0.00035962	1.2878	0.00069454	539.299993281133	54.208	0.66408	54.271	53.876	54.54	0.063202					70	24	4	0	0	0	0.22377	1	12876	12876		36.506	0	1	766660			58247	4607	33385	33386	71248	71248					0.05138012131760661
YIAVFIQPF	9	Unmodified	_YIAVFIQPF_					0	0	0		nc|ENSG00000092931|O43934-2|MFSD11;ENSG00000092931|ENST00000685175|MFSD11	nc|ENSG00000092931|O43934-2|MFSD11	nc|ENSG00000092931|O43934-2|MFSD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2853393554688	2	549.305136	1096.59572	0.6941	0.00038127	-4.4065	-0.0024205	-3.7124	-0.0020392	549.3024386422738	44.772	0.22514	44.772	44.684	44.909	0					12	7	2	0	0	0	0.085029	1	9958	9958		40.449	11.962	1	126690			58248	1430	33386	33387	71249	71249					0.05128405488062526
YIAVFIQPF	9	Unmodified	_YIAVFIQPF_					0	0	0		nc|ENSG00000092931|O43934-2|MFSD11;ENSG00000092931|ENST00000685175|MFSD11	nc|ENSG00000092931|O43934-2|MFSD11	nc|ENSG00000092931|O43934-2|MFSD11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	549.305136	1096.59572	0.58219	0.0003198	-3.2562	-0.0017887	-2.6741	-0.0014689	549.8049584832199	44.54	0.16713	44.615	44.502	44.669	0.075047	-0.078659	0.00080905	NaN	40.449	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105830			58249	1430	33386	33387							0.05128405488062526
YICCLVLYM	9	Unmodified	_YICCLVLYM_					0	0	0		ENST00000302640.12_1_3:4888999-4889098:+|nuORF	ENST00000302640.12_1_3:4888999-4889098:+|nuORF	ENST00000302640.12_1_3:4888999-4889098:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3241577148438	2	560.765617	1119.51668	0.44639	0.00025032	3.5022	0.0019639	3.9486	0.0022142	561.2695715778425	77.157	0.32563	77.157	76.879	77.204	0					16	11	2	0	0	0	0.22431	1	19873	19873		20.871	6.2895	1	77052			58250	9238	33387	33388	71250	71250					-0.03829649124372736
YICEICGKSF	10	Unmodified	_YICEICGKSF_					0	0	0		nc|ENSG00000114853|Q9UFB7-2|ZBTB47;ENSG00000114853|ENST00000232974|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.765869140625	2	581.767203	1161.51985	0.45728	0.00026603	-1.6687	-0.0009708	-1.2114	-0.00070477	582.2673326594534	83.726	1.1937	83.803	82.805	83.998	0.077095					90	46	4	0	0	0	0.10934	1	21926	21926		46.021	0	1	325520			58251	2587	33388	33389	71251	71251					-0.05444682745996943
YICEICGKSF	10	Unmodified	_YICEICGKSF_					0	0	0		nc|ENSG00000114853|Q9UFB7-2|ZBTB47;ENSG00000114853|ENST00000232974|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	581.767203	1161.51985	0.55827	0.00032478	-2.2679	-0.0013194	-1.7097	-0.00099463	582.2673681572608	83.897	0.88802	83.897	83.298	84.186	0	0.033662	-0.00037068	NaN	46.021	59	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263320			58252	2587	33388	33389							-0.05444682745996943
YICEICGKSF	10	Unmodified	_YICEICGKSF_					0	0	0		nc|ENSG00000114853|Q9UFB7-2|ZBTB47;ENSG00000114853|ENST00000232974|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	nc|ENSG00000114853|Q9UFB7-2|ZBTB47	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	581.767203	1161.51985	0.51629	0.00030036	-1.7349	-0.0010093	-1.2186	-0.00070892	582.2675046872699	83.906	1.4457	83.889	83.288	84.734	-0.016823	0.026385	0.00024957	NaN	46.021	121	61	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276210			58253	2587	33388	33389							-0.05444682745996943
YICFSLTCI	9	Carbamidomethyl (C)	_YIC(Carbamidomethyl (C))FSLTCI_	YIC(1)FSLTCI		YIC(37)FSLTC(-37)I		0	1	0			REV__ENSG00000153246|ENST00000283243|PLA2R1	REV__ENSG00000153246|ENST00000283243|PLA2R1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.264404296875	2	560.264296	1118.51404	0.31079	0.00017412	-0.43965	-0.00024632	-0.12886	-7.2195E-05	560.2642345069818	79.726	0.88144	79.726	79.441	80.322	0					132	32	6	0	0	0	0.029841	1	20650	20650		60.39	18.295	2	5876500	+		58254	16619	33389	33390	71252	71252	25				-0.040477812576909855
YICFSLTCI	9	Carbamidomethyl (C)	_YIC(Carbamidomethyl (C))FSLTCI_	YIC(1)FSLTCI		YIC(37)FSLTC(-37)I		0	1	0			REV__ENSG00000153246|ENST00000283243|PLA2R1	REV__ENSG00000153246|ENST00000283243|PLA2R1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.2640380859375	2	560.264296	1118.51404	0.38998	0.00021849	-0.61952	-0.00034709	-0.22954	-0.0001286	560.2641903152165	79.688	1.2311	79.749	79.394	80.625	0.061417					139	46	6	0	0	0	0.029841	1	20615	20615		60.39	18.295	2	6378500	+		58255	16619	33389	33390	71253	71253	25				-0.040477812576909855
YICLPINI	8	Unmodified	_YICLPINI_					0	0	0		ENST00000497048.5_1_9:110247318-110247534:-|nuORF	ENST00000497048.5_1_9:110247318-110247534:-|nuORF	ENST00000497048.5_1_9:110247318-110247534:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.7784118652344	2	474.764789	947.515025	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.263	1	77.318	76.818	77.818	0.055412								0	0	0	0.35014	1	19925	19925		14.582	0	1				58256	11244	33390	33391	71254	71254					0.03916801173522799
YICSKCGKAF	10	Unmodified	_YICSKCGKAF_					0	0	0		ENSG00000245680|ENST00000532828|ZNF585B;ENSG00000196967|ENST00000292841|ZNF585A	ENSG00000245680|ENST00000532828|ZNF585B	ENSG00000245680|ENST00000532828|ZNF585B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2886962890625	2	560.269912	1118.52527	0.52289	0.00029296	3.5562	0.0019925	4.0791	0.0022854	560.2731589783893	64.307	1.1869	64.307	63.889	65.076	0					148	43	5	0	0	0	0.29978	1	16062	16062		20.454	0.039092	1	2194300			58257	7920	33391	33392	71255	71255					-0.029249591635334582
YIDENDVKF	9	Unmodified	_YIDENDVKF_					0	0	0			REV__nc|ENSG00000111816|P42685-2|FRK	REV__nc|ENSG00000111816|P42685-2|FRK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2896728515625	2	571.771854	1141.52915	0.095575	5.4647E-05	-4.3207	-0.0024705	-4.2252	-0.0024158	571.7692255016633	69.623	0.37978	69.623	69.566	69.946	0					15	13	2	0	0	0	0.28674	1	17622	17622		10.824	0	1	94325	+		58258	14738	33392	33393	71256	71256					-0.035948748644841544
YIDESYGFF	9	Unmodified	_YIDESYGFF_					0	0	0			REV__ENST00000430292.5_1_1:27113978-27114107:+|nuORF	REV__ENST00000430292.5_1_1:27113978-27114107:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.7899169921875	2	570.747847	1139.48114	0.66824	0.0003814	-0.46003	-0.00026256	0.20821	0.00011883	571.2487283418554	77.837	0.69721	77.837	77.604	78.302	0					53	25	3	0	0	0	0.25417	1	20220	20220		8.5933	0	1	284560	+		58259	20941	33393	33394	71257	71257					-0.08301948784514934
YIDHSPILF	9	Unmodified	_YIDHSPILF_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7493286132812	2	552.78985	1103.56515	0.32232	0.00017817	3.6278	0.0020054	3.9502	0.0021836	552.7917251750388	73.074	0.25146	73.128	72.948	73.2	0.053841					13	8	2	0	0	0	0.17949	1	18617	18617		32.117	3.6301	1	56686	+		58260	16188	33394	33395	71258	71258					0.01750627103047009
YIDNPVGTGF	10	Unmodified	_YIDNPVGTGF_					0	0	0		ENSG00000106066|ENST00000265394|CPVL;CPVL|p.V344Sfs*18|1|0.04|ENSG00000106066|chr7:29064168-29064169|-/AGAAGTGATTTGTAATTTGA|frameshift_variant	ENSG00000106066|ENST00000265394|CPVL	ENSG00000106066|ENST00000265394|CPVL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2650146484375	2	541.761289	1081.50803	0.6386	0.00034597	1.8899	0.0010239	2.5285	0.0013698	541.7623446049944	82.832	0.72201	82.905	82.705	83.427	0.073097					50	27	3	0	0	0	0.2593	1	21625	21625		25.399	0	1	447230			58261	2053	33395	33396	71259	71259					-0.029468401733083738
YIDQDMQV	8	Unmodified	_YIDQDMQV_					0	0	0		nc|ENSG00000152990|Q8IWK6-4|ADGRA3;nc|ENSG00000152990|Q8IWK6-2|ADGRA3;nc|ENSG00000152990|Q8IWK6-3|ADGRA3;ENSG00000152990|ENST00000334304|ADGRA3	nc|ENSG00000152990|Q8IWK6-4|ADGRA3	nc|ENSG00000152990|Q8IWK6-4|ADGRA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.27899169921875	2	506.226225	1010.4379	0.29844	0.00015108	1.1292	0.00057165	1.4277	0.00072273	506.72872452272117	80.112	0.52129	80.112	79.825	80.346	0					35	18	3	0	0	0	0.34185	1	20873	20873		10.183	3.4602	1	102400			58262	5049	33396	33397	71260	71260					-0.06690461833443351
YIDQKNVEF	9	Unmodified	_YIDQKNVEF_					0	0	0			REV__ENSG00000136021|ENST00000360820|SCYL2	REV__ENSG00000136021|ENST00000360820|SCYL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.7796020507812	2	578.287671	1154.56079	0.26242	0.00015176	1.5515	0.00089724	1.814	0.001049	578.2889174327806	73.114	0.34567	73.114	72.961	73.307	0					25	11	3	0	0	0	0.24739	1	18653	18653		13.508	0	1	240720	+		58263	15781	33397	33398	71261	71261					-0.010308821105354582
YIDQQTSRE	9	Unmodified	_YIDQQTSRE_					0	0	0			REV__nc|ENSG00000079616|Q14807-2|KIF22	REV__nc|ENSG00000079616|Q14807-2|KIF22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.8057250976562	2	570.27001	1138.52547	0.34277	0.00019547	-4.2869	-0.0024447	-3.9441	-0.0022492	570.7693498047951	76.915	0.33607	76.915	76.754	77.09	0					25	12	3	0	0	0	0.21389	1	19860	19860		25.399	3.8623	1	86119	+		58264	13873	33398	33399	71262	71262					-0.03825544638334577
YIEEAIRAAE	10	Unmodified	_YIEEAIRAAE_					0	0	0			REV__ENSG00000165192|ENST00000480796|ASB11	REV__ENSG00000165192|ENST00000480796|ASB11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.2846069335938	2	582.798403	1163.58225	0.46889	0.00027327	-2.4083	-0.0014036	-1.9395	-0.0011303	582.7969778520204	64.687	0.24265	64.687	64.591	64.834	0					12	8	2	0	0	0	0.3144	1	16096	16096		13.042	2.2185	1	98229	+		58265	17216	33399	33400	71263	71263					0.007005029181755162
YIEGRAIIL	9	Unmodified	_YIEGRAIIL_					0	0	0		HAL1_dup9681|chr6:160215926-160216687:+|17.712225196789895|0.2873859347405961|5.95|533.0|3|1|sense	HAL1_dup9681|chr6:160215926-160216687:+|17.712225196789895|0.2873859347405961|5.95|533.0|3|1|sense	HAL1_dup9681|chr6:160215926-160216687:+|17.712225196789895|0.2873859347405961|5.95|533.0|3|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3134765625	2	524.313492	1046.61243	0.60772	0.00031864	0.031153	1.6334E-05	0.63888	0.00033497	524.3132717443759	64.038	0.65459	64.131	63.9	64.554	0.09288					51	23	3	0	0	0	0.16283	1	15894	15894		29.082	1.4528	1	802190			58266	12352	33400	33401	71264	71264					0.09098906374038052
YIEHLLTQL	9	Unmodified	_YIEHLLTQL_					0	0	0		nc|ENSG00000176771|O14513-4|NCKAP5;nc|ENSG00000176771|O14513-3|NCKAP5;nc|ENSG00000176771|O14513-2|NCKAP5;ENSG00000176771|ENST00000409261|NCKAP5	nc|ENSG00000176771|O14513-4|NCKAP5	nc|ENSG00000176771|O14513-4|NCKAP5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.3162231445312	2	565.316232	1128.61791	0.28719	0.00016235	0.070923	4.0094E-05	0.35811	0.00020245	565.3161478914587	68.43	1.7187	68.43	68.15	69.869	0					132	62	3	0	0	0	0.016723	1	17305	17305		69.105	17.475	1	1223900			58267	6942	33401	33402	71265	71265					0.0587458516586139
YIEHLLTQL	9	Unmodified	_YIEHLLTQL_					0	0	0		nc|ENSG00000176771|O14513-4|NCKAP5;nc|ENSG00000176771|O14513-3|NCKAP5;nc|ENSG00000176771|O14513-2|NCKAP5;ENSG00000176771|ENST00000409261|NCKAP5	nc|ENSG00000176771|O14513-4|NCKAP5	nc|ENSG00000176771|O14513-4|NCKAP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.7611694335938	2	565.316232	1128.61791	0.34723	0.0001963	0.11056	6.2499E-05	0.45779	0.0002588	565.3161936886213	68.4	1.7557	68.472	68.106	69.862	0.071945					138	63	3	0	0	0	0.042824	1	17261	17261		66.457	8.7347	1	973190			58268	6942	33401	33402	71266	71266					0.0587458516586139
YIEHLLTQL	9	Unmodified	_YIEHLLTQL_					0	0	0		nc|ENSG00000176771|O14513-4|NCKAP5;nc|ENSG00000176771|O14513-3|NCKAP5;nc|ENSG00000176771|O14513-2|NCKAP5;ENSG00000176771|ENST00000409261|NCKAP5	nc|ENSG00000176771|O14513-4|NCKAP5	nc|ENSG00000176771|O14513-4|NCKAP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7615966796875	2	565.316232	1128.61791	0.30329	0.00017146	0.24219	0.00013692	0.54548	0.00030837	565.3160986330591	68.464	1.5836	68.445	68.148	69.732	-0.01915					103	56	2	0	0	0	0.059216	1	17283	17283		69.105	17.475	1	759120			58269	6942	33401	33402	71267	71267					0.0587458516586139
YIEIAKQY	8	Unmodified	_YIEIAKQY_					0	0	0			REV__nc|ENSG00000125814|Q9H115-3|NAPB	REV__nc|ENSG00000125814|Q9H115-3|NAPB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.2583618164062	2	514.276575	1026.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.57	1	69.636	69.136	70.136	0.066048								0	0	0	0.35985	1	17582	17582		10.183	0	1		+		58270	22978	33402	33403	71268	71268					0.026389382117031346
YIEIYRVVG	9	Unmodified	_YIEIYRVVG_					0	0	0		ENST00000504941.1_1_5:106762801-107006392:-|nuORF	ENST00000504941.1_1_5:106762801-107006392:-|nuORF	ENST00000504941.1_1_5:106762801-107006392:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3234252929688	2	556.310949	1110.60735	0.39597	0.00022028	-0.42934	-0.00023884	-0.033361	-1.8559E-05	556.3108574817646	65.652	0.93291	65.641	65.372	66.305	-0.011337					56	33	3	0	0	0	0.25314	1	16567	16567		15.847	0	1	794030			58271	11305	33403	33404	71269	71269					0.05646602511410492
YIEKSLDKLK	10	Unmodified	_YIEKSLDKLK_					0	0	0		nc|ENSG00000073737|Q9BPW9-2|DHRS9;ENSG00000073737|ENST00000674881|DHRS9;nc|ENSG00000073737|Q9BPW9-4|DHRS9	nc|ENSG00000073737|Q9BPW9-2|DHRS9	nc|ENSG00000073737|Q9BPW9-2|DHRS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.863525390625	2	618.863546	1235.71254	0.48772	0.00030183	-0.2667	-0.00016505	0.22102	0.00013678	618.8632731449724	53.849	0.75333	53.849	53.595	54.348	0					64	27	3	0	0	0	0.38515	1	12802	12802		6.2058	0.013936	1	1215700			58272	1005	33404	33405	71270	71270					0.10411098917165873
YIEPLRSIL	9	Unmodified	_YIEPLRSIL_					0	0	0			REV__ENSG00000103966|ENST00000220325|EHD4	REV__ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.3269653320312	2	552.326599	1102.63865	0.35907	0.00019832	-0.53226	-0.00029398	-0.17319	-9.566E-05	552.3267640992925	68.012	3.0099	68.012	67.647	70.657	0					340	109	6	0	0	0	0.17787	1	17407	17407		26.884	1.4843	1	40510000	+		58273	14389	33405	33406	71271	71271					0.09143175545523263
YIEPLRSIL	9	Unmodified	_YIEPLRSIL_					0	0	0			REV__ENSG00000103966|ENST00000220325|EHD4	REV__ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.3260498046875	2	552.326599	1102.63865	0.4755	0.00026263	-0.67405	-0.0003723	-0.19855	-0.00010966	552.3266772676917	67.933	3.0191	68.011	67.628	70.647	0.078041					315	108	6	0	0	0	0.12846	3	17313	17259;17313;17380		34.102	7.8343	1	41901000	+		58274	14389	33405	33406	71272;71273;71274	71273					0.09143175545523263
YIEPLRSIL	9	Unmodified	_YIEPLRSIL_					0	0	0			REV__ENSG00000103966|ENST00000220325|EHD4	REV__ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.3265380859375	2	552.326599	1102.63865	0.36372	0.00020089	-0.5529	-0.00030538	-0.18918	-0.00010449	552.326746665405	67.997	3.004	67.981	67.644	70.648	-0.016296					325	107	6	0	0	0	0.12846	1	17365	17365		34.102	7.8343	1	42102000	+		58275	14389	33405	33406	71275	71275					0.09143175545523263
YIESLLRKEP	10	Unmodified	_YIESLLRKEP_					0	0	0		ENSG00000280165|ENST00000409204|PCDH20	ENSG00000280165|ENST00000409204|PCDH20	ENSG00000280165|ENST00000409204|PCDH20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.353515625	2	624.353345	1246.69214	0.44375	0.00027706	0.25859	0.00016145	0.70235	0.00043851	624.3542877069212	89.243	0.91367	89.243	88.672	89.586	0					81	43	3	0	0	0	0.34325	1	23621	23621		13.906	5.7505	1	211590			58276	8754	33406	33407	71276	71276					0.0786592825736534
YIESLLRKEP	10	Unmodified	_YIESLLRKEP_					0	0	0		ENSG00000280165|ENST00000409204|PCDH20	ENSG00000280165|ENST00000409204|PCDH20	ENSG00000280165|ENST00000409204|PCDH20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.3541870117188	2	624.353345	1246.69214	0.12464	7.782E-05	0.96106	0.00060004	1.0857	0.00067786	624.3541940446436	89.162	0.82761	89.253	88.675	89.503	0.090561					80	39	3	0	0	0	0.3641	2	23577	23577;23632		10.074	2.465	1	150260			58277	8754	33406	33407	71277;71278	71277					0.0786592825736534
YIEVKPVHPNF	11	Unmodified	_YIEVKPVHPNF_					0	0	0			REV__nc|ENSG00000007341|Q8TDW4-8|ST7L	REV__nc|ENSG00000007341|Q8TDW4-8|ST7L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.2737731933594	3	448.243317	1341.70812	0.90981	0.00040782	-1.6541	-0.00074146	-0.74433	-0.00033364	448.5768802807105	47.113	0.192	47.168	47.064	47.256	0.054375					9	6	2	0	0	0	0.3325	1	10674	10674		4.1166	2.9233	1	120510	+		58278	21248	33407	33408	71279	71279					0.05093634494278376
YIEWLSLF	8	Unmodified	_YIEWLSLF_					0	0	0			REV__nc|ENSG00000164935|Q9H295-2|DCSTAMP	REV__nc|ENSG00000164935|Q9H295-2|DCSTAMP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.7820434570312	2	535.781493	1069.54843	0.2982	0.00015977	0.31672	0.00016969	0.61491	0.00032946	535.7825077319369	80.093	0.97327	80.154	79.749	80.722	0.061409					69	36	3	0	0	0	0.42446	1	20790	20790		14.582	1.0738	1	238150	+		58279	17192	33408	33409	71280	71280					0.016441262170928894
YIFAHSFAY	9	Unmodified	_YIFAHSFAY_					0	0	0			REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5	REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7799072265625	2	559.768917	1117.52328	0.38643	0.00021631	-3.4189	-0.0019138	-3.0324	-0.0016975	560.2694394070743	89.403	0.49611	89.403	89.202	89.698	0					48	28	2	0	0	0	0.28128	1	23669	23669		11.64	1.5664	1	170210	+		58280	13065	33409	33410	71281	71281					-0.030779285854805494
YIFCMMEKF	9	Unmodified	_YIFCMMEKF_					0	0	0			REV__ENST00000504889.5_1_17:47684605-47685268:-|nuORF	REV__ENST00000504889.5_1_17:47684605-47685268:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.2279968261719	3	404.514775	1210.52249	-0.28105	-0.00011369	-0.074991	-3.0335E-05	-0.35604	-0.00014403	404.5147909601165	66.92	0.90279	66.906	66.662	67.565	-0.013596					47	31	3	0	0	0	0.25938	1	16772	16772		2.4985	1.0434	1	307010	+		58281	15109	33410	33411	71282	71282					-0.07434550612697421
YIFGLENLI	9	Unmodified	_YIFGLENLI_					0	0	0		ENSG00000161896|ENST00000293756|IP6K3	ENSG00000161896|ENST00000293756|IP6K3	ENSG00000161896|ENST00000293756|IP6K3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.7717895507812	2	541.30005	1080.58555	0.63867	0.00034571	-0.57748	-0.00031259	0.061189	3.3122E-05	541.2990513997955	72.5	1.2199	72.554	71.651	72.871	0.053833					75	44	3	0	0	0	0.20651	1	18496	18496		26.884	16.06	1	236580			58282	5533	33411	33412	71283	71283					0.04847797762840855
YIFKMRPWK	9	Unmodified	_YIFKMRPWK_					0	0	0		ENSG00000165621|ENST00000541038|OXGR1	ENSG00000165621|ENST00000541038|OXGR1	ENSG00000165621|ENST00000541038|OXGR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.2696533203125	3	423.5706	1267.68997	-0.055506	-2.3511E-05	-0.14353	-6.0796E-05	-0.19904	-8.4307E-05	423.57070351544166	21.759	0.59457	21.759	21.401	21.996	0					42	21	3	0	0	0	0.259	1	2989	2989		5.2969	5.2969	1	61734			58283	5980	33412	33413	71284	71284					0.06683221038565534
YIFKMRPWK	9	Unmodified	_YIFKMRPWK_					0	0	0		ENSG00000165621|ENST00000541038|OXGR1	ENSG00000165621|ENST00000541038|OXGR1	ENSG00000165621|ENST00000541038|OXGR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.2592468261719	3	423.5706	1267.68997	-0.02242	-9.4966E-06	-0.32273	-0.0001367	-0.34515	-0.00014619	423.5705688205865	21.811	0.63019	21.71	21.443	22.074	-0.10034					43	22	3	0	0	0	0.259	1	2937	2937		5.2969	0.39987	1	113430			58284	5980	33412	33413	71285	71285					0.06683221038565534
YIFKMRPWK	9	Unmodified	_YIFKMRPWK_					0	0	0		ENSG00000165621|ENST00000541038|OXGR1	ENSG00000165621|ENST00000541038|OXGR1	ENSG00000165621|ENST00000541038|OXGR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.5936279296875	3	423.5706	1267.68997	-0.05924	-2.5092E-05	-0.45433	-0.00019244	-0.51357	-0.00021753	423.5704715436607	21.78	0.57415	21.731	21.373	21.948	-0.049377					34	20	2	0	0	0	0.259	1	2932	2932		5.2969	0.39987	1	115610			58285	5980	33412	33413	71286	71286					0.06683221038565534
YIFLNKTF	8	Unmodified	_YIFLNKTF_					0	0	0		ENSG00000175548|ENST00000308742|ALG10B	ENSG00000175548|ENST00000308742|ALG10B	ENSG00000175548|ENST00000308742|ALG10B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.8035888671875	2	523.289485	1044.56442	0.31571	0.00016521	-3.3741	-0.0017656	-3.0584	-0.0016004	523.7899668768483	24.929	0.99189	24.873	24.6	25.592	-0.055931					59	34	3	0	0	0	0.42758	1	4085	4085		13.508	0	1	120950			58286	6873	33413	33414	71287	71287					0.043918324539845344
YIFLPLPD	8	Unmodified	_YIFLPLPD_					0	0	0		ENST00000559291.5_1_15:40831548-40845797:-|nuORF;ENST00000358005.7_1_15:40845554-40845797:-|nuORF	ENST00000559291.5_1_15:40831548-40845797:-|nuORF	ENST00000559291.5_1_15:40831548-40845797:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.76971435546875	2	489.270761	976.52697	-0.10894	-5.3302E-05	0.99349	0.00048609	0.88455	0.00043278	489.27112728886163	12.813	0.38469	12.746	12.52	12.905	-0.067496					21	12	3	0	0	0	0.344	1	242	242		2.5775	0	1	171550			58287	9641	33414	33415	71288	71288					0.03776741188369215
YIFLRQRAR	9	Unmodified	_YIFLRQRAR_					0	0	0		ENST00000402554.7_1_17:8363409-8370338:+|nuORF	ENST00000402554.7_1_17:8363409-8370338:+|nuORF	ENST00000402554.7_1_17:8363409-8370338:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.5595703125	3	408.243763	1221.70946	-0.2615	-0.00010676	-0.089964	-3.6727E-05	-0.35147	-0.00014349	408.2435923162564	23.329	0.89626	23.329	23.021	23.917	0					72	29	3	0	0	0	0.2603	1	3537	3537		4.1895	3.5627	1	337300			58288	10198	33415	33416	71289	71289					0.10747313373690304
YIFLRQRAR	9	Unmodified	_YIFLRQRAR_					0	0	0		ENST00000402554.7_1_17:8363409-8370338:+|nuORF	ENST00000402554.7_1_17:8363409-8370338:+|nuORF	ENST00000402554.7_1_17:8363409-8370338:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	408.243763	1221.70946	-0.102	-4.1641E-05	-0.28132	-0.00011485	-0.38333	-0.00015649	408.24349719941824	23.492	0.93175	23.411	23.083	24.015	-0.081293	-0.011272	3.777E-05	NaN	2.086	92	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272650			58289	10198	33415	33416							0.10747313373690304
YIFLRQRAR	9	Unmodified	_YIFLRQRAR_					0	0	0		ENST00000402554.7_1_17:8363409-8370338:+|nuORF	ENST00000402554.7_1_17:8363409-8370338:+|nuORF	ENST00000402554.7_1_17:8363409-8370338:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	408.243763	1221.70946	0.068713	2.8052E-05	-0.51944	-0.00021206	-0.45073	-0.00018401	408.243424967852	23.565	0.90855	23.526	23.173	24.081	-0.038927	0.10441	-0.00025386	NaN	2.086	82	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234130			58290	10198	33415	33416							0.10747313373690304
YIFMHAGIE	9	Unmodified	_YIFMHAGIE_					0	0	0		nc|ENSG00000141314|P58872-2|RHBDL3;nc|ENSG00000141314|P58872-3|RHBDL3;ENSG00000141314|ENST00000269051|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2059326171875	2	540.762778	1079.511	0.12211	6.603E-05	3.3642	0.0018192	3.4863	0.0018853	541.2655523015463	65.146	0.48451	65.235	65.006	65.491	0.088882					40	17	3	0	0	0	0.17949	1	16201	16201		32.117	4.4882	1	262570			58291	4366	33416	33417	71290	71290					-0.025572883201675722
YIFMHAGIE	9	Unmodified	_YIFMHAGIE_					0	0	0		nc|ENSG00000141314|P58872-2|RHBDL3;nc|ENSG00000141314|P58872-3|RHBDL3;ENSG00000141314|ENST00000269051|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	nc|ENSG00000141314|P58872-2|RHBDL3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	540.762778	1079.511	0.23239	0.00012567	2.8597	0.0015464	3.0921	0.0016721	540.7645234045796	65.268	0.47035	65.268	65.047	65.518	0	0.016394	-0.00016468	NaN	32.117	40	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288970			58292	4366	33416	33417							-0.025572883201675722
YIFNLVDSF	9	Unmodified	_YIFNLVDSF_					0	0	0			REV__ENSG00000174282|ENST00000380599|ZBTB4	REV__ENSG00000174282|ENST00000380599|ZBTB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.8040771484375	2	559.281857	1116.54916	0.24495	0.000137	1.1064	0.00061881	1.3514	0.00075581	559.7844393109558	45.725	0.61425	45.785	45.536	46.15	0.059834					34	21	2	0	0	0	0.23775	1	10249	10249		18.135	1.1927	1	348240	+		58293	17823	33417	33418	71291	71291					-0.004450791338513227
YIFNLVDSF	9	Unmodified	_YIFNLVDSF_					0	0	0			REV__ENSG00000174282|ENST00000380599|ZBTB4	REV__ENSG00000174282|ENST00000380599|ZBTB4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	559.281857	1116.54916	0.43181	0.0002415	0.054519	3.0492E-05	0.48633	0.00027199	559.2815084708718	45.793	0.6584	45.858	45.595	46.253	0.065048	-0.024972	-0.00036724	NaN	18.135	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216940	+		58294	17823	33417	33418							-0.004450791338513227
YIFPAFDQI	9	Unmodified	_YIFPAFDQI_					0	0	0		ENSG00000083123|ENST00000320393|BCKDHB;nc|ENSG00000083123|P21953-2|BCKDHB	ENSG00000083123|ENST00000320393|BCKDHB	ENSG00000083123|ENST00000320393|BCKDHB	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.2681884765625	2	557.2844	1112.55425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.296	1	78.296	77.796	78.796	0								0	0	0	0.16757	1	20251	20251		30.637	7.9003	1				58295	1215	33418	33419	71292	71292					0.002472247287414575
YIFPCSPVMES	11	Unmodified	_YIFPCSPVMES_					0	0	0			REV__ENST00000583548.1_1_17:73204633-73212422:+|nuORF	REV__ENST00000583548.1_1_17:73204633-73212422:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.825927734375	2	636.785592	1271.55663	0.82786	0.00052717	-3.3606	-0.00214	-2.5327	-0.0016128	636.7839654003847	64.003	0.19131	63.994	63.91	64.101	-0.0095291					9	6	2	0	0	0	0.329	1	15873	15873		9.3831	3.1773	1	92953	+		58296	15267	33419	33420	71293	71293					-0.06828430920086248
YIFTVVYSK	9	Unmodified	_YIFTVVYSK_					0	0	0			REV__ENSG00000205929|ENST00000479548|C21orf62	REV__ENSG00000205929|ENST00000479548|C21orf62	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3060302734375	2	560.307875	1118.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.383	1	93.383	92.883	93.883	0								0	0	0	0.2575	1	24870	24870		3.9444	0.3479	1		+		58297	19010	33420	33421	71294	71294					0.04664084279920644
YIGDIVSLYA	10	Unmodified	_YIGDIVSLYA_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000123104|Q14571-2|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2946166992188	2	557.294965	1112.57538	0.35754	0.00019926	0.11499	6.4085E-05	0.47254	0.00026334	557.2939513174452	65.938	0.7907	65.926	65.721	66.512	-0.012833					66	28	3	0	0	0	0.30958	1	16497	16497		19.257	4.4187	1	808140			58298	3087	33421	33422	71295	71295					0.023591900376231933
YIGFFVLWT	9	Unmodified	_YIGFFVLWT_					0	0	0			REV__ENST00000281620.10_1_13:26279420-26594120:+|nuORF	REV__ENST00000281620.10_1_13:26279420-26594120:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.2865600585938	2	573.305136	1144.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.854	1	75.854	75.354	76.354	0								0	0	0	0.22789	1	19507	19507		13.508	2.684	1		+		58299	15596	33422	33423	71296	71296					0.029204054880665353
YIGGYKWII	9	Unmodified	_YIGGYKWII_					0	0	0			REV__ENSG00000118017|ENST00000236709|A4GNT	REV__ENSG00000118017|ENST00000236709|A4GNT	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.8212890625	2	556.810585	1111.60662	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.088	1	82.064	81.564	82.564	-0.02404								0	0	0	0.19804	1	21395	21395		23.148	2.2772	1		+		58300	14995	33423	33424	71297	71297					0.055278078623587135
YIGLRDVDP	9	Unmodified	_YIGLRDVDP_					0	0	0		ENSG00000081181|ENST00000261783|ARG2;ENST00000557120.5_1_14:68086664-68113456:+|nuORF;ARG1|p.G207Rfs*26|1|0.38|ENSG00000118520|chr6:131583115-131583116|-/T|frameshift_variant;nc|ENSG00000118520|P05089-3|ARG1;ENSG00000118520|ENST00000368087|ARG1;nc|ENSG00000118520|P05089-2|ARG1	ENSG00000081181|ENST00000261783|ARG2	ENSG00000081181|ENST00000261783|ARG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.8215942382812	2	524.277106	1046.53966	0.44405	0.0002328	0.5497	0.00028819	0.99374	0.000521	524.2774062185841	51.495	0.32339	51.542	51.375	51.699	0.046574					18	11	2	0	0	0	0.25066	1	12006	12006		11.64	0	1	246590			58301	1177	33424	33425	71298	71298					0.01825152580613576
YIGLSQGWFF	10	Unmodified	_YIGLSQGWFF_					0	0	0			REV__ENST00000224140.5_1_9:135229080-135229140:-|nuORF	REV__ENST00000224140.5_1_9:135229080-135229140:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	407.2108154296875	3	406.537842	1216.5917	0.029904	1.2157E-05	-1.57	-0.00063827	-1.5401	-0.00062611	406.5373070487304	30.114	0.55869	30.114	29.801	30.359	0					43	19	4	0	0	0	0.31143	1	5545	5545		10.899	0	1	141210	+		58302	19434	33425	33426	71299	71299					-0.007936840056345318
YIGMPHCPGS	10	Unmodified	_YIGMPHCPGS_					0	0	0		nc|ENSG00000118557|Q8TBY8-3|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-4|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2315673828125	2	531.230787	1060.44702	0.57313	0.00030446	0.52977	0.00028143	1.1029	0.00058589	531.2310250214737	72.172	0.67901	72.172	71.827	72.506	0					58	24	4	0	0	0	0.39536	1	18432	18432		4.3292	4.3292	1	355100			58303	2834	33426	33427	71300	71300					-0.08078391748790636
YIGQDTGNPF	10	Unmodified	_YIGQDTGNPF_					0	0	0			REV__ENST00000571720.2_1_16:68596924-68598598:+|nuORF	REV__ENST00000571720.2_1_16:68596924-68598598:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2576293945312	2	556.256371	1110.49819	0.36615	0.00020367	1.4864	0.00082679	1.8525	0.0010305	556.2572826873122	79.607	0.6971	79.607	79.338	80.035	0					64	26	3	0	0	0	0.2811	1	20677	20677		22.736	5.6234	1	417920	+		58304	18341	33427	33428	71301	71301					-0.05264028178726221
YIHALFFEK	9	Unmodified	_YIHALFFEK_					0	0	0			REV__nc|ENSG00000094880|Q9UJX2-3|CDC23	REV__nc|ENSG00000094880|Q9UJX2-3|CDC23	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.3145751953125	2	584.313492	1166.61243	0.19518	0.00011405	0.23823	0.0001392	0.43341	0.00025324	584.3137894574757	30.773	0.42921	30.801	30.58	31.009	0.027946					24	14	2	0	0	0	0.32733	1	5713	5713		4.756	0.81161	1	126450	+		58305	14092	33428	33429	71302	71302					0.03578906374013968
YIHALFFEK	9	Unmodified	_YIHALFFEK_					0	0	0			REV__nc|ENSG00000094880|Q9UJX2-3|CDC23	REV__nc|ENSG00000094880|Q9UJX2-3|CDC23	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	584.313492	1166.61243	0.28725	0.00016784	-0.75602	-0.00044175	-0.46877	-0.00027391	584.313389124605	30.765	0.45356	30.765	30.553	31.007	0	-0.02645	-0.00072452	NaN	4.756	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116590	+		58306	14092	33428	33429							0.03578906374013968
YIHALFFEK	9	Unmodified	_YIHALFFEK_					0	0	0			REV__nc|ENSG00000094880|Q9UJX2-3|CDC23	REV__nc|ENSG00000094880|Q9UJX2-3|CDC23	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	584.313492	1166.61243	0.19518	0.00011405	0.23823	0.0001392	0.43341	0.00025324	584.3137894574757	30.773	0.42921	30.801	30.58	31.009	0.027946	0.0097548	0.00043738	NaN	4.756	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126450	+		58307	14092	33428	33429							0.03578906374013968
YIHALFFEK	9	Unmodified	_YIHALFFEK_					0	0	0			REV__nc|ENSG00000094880|Q9UJX2-3|CDC23	REV__nc|ENSG00000094880|Q9UJX2-3|CDC23	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	584.313492	1166.61243	0.16262	9.5022E-05	0.046775	2.7331E-05	0.2094	0.00012235	584.3136768438472	30.781	0.42002	30.808	30.555	30.975	0.027157	0.016695	0.00021365	NaN	4.756	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133170	+		58308	14092	33428	33429							0.03578906374013968
YIHARGLVYR	10	Unmodified	_YIHARGLVYR_					0	0	0		ENSG00000187550|ENST00000413299|SBK2	ENSG00000187550|ENST00000413299|SBK2	ENSG00000187550|ENST00000413299|SBK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3536376953125	2	624.354014	1246.69348	0.28205	0.0001761	0.52375	0.000327	0.80579	0.0005031	624.3542705663813	89.252	0.70926	89.251	88.78	89.489	-0.00080872					60	32	2	0	0	0	0.38233	1	23666	23666		6.7232	1.8262	1	175450			58309	7688	33429	33430	71303	71303					0.07999607136775921
YIHENYLQL	9	Unmodified	_YIHENYLQL_					0	0	0		ENSG00000151148|ENST00000342494|UBE3B;ENST00000538070.1_1_12:109958991-109971866:+|nuORF;ENST00000449510.6_1_12:109955755-109964222:+|nuORF	ENSG00000151148|ENST00000342494|UBE3B	ENSG00000151148|ENST00000342494|UBE3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.7907104492188	2	596.803488	1191.59242	0.46892	0.00027985	1.3732	0.00081952	1.8421	0.0010994	596.8044667526127	74.304	1.4763	74.273	73.584	75.06	-0.030655					119	52	3	0	0	0	0.28128	1	19040	19040		11.64	2.2572	1	742600			58310	4940	33430	33431	71304	71304					0.004291106434266112
YIHIFLNEVV	10	Unmodified	_YIHIFLNEVV_					0	0	0		nc|ENSG00000205356|Q7Z6L1-3|TECPR1;ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1	nc|ENSG00000205356|Q7Z6L1-3|TECPR1	nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5423889160156	3	416.23253	1245.67576	-0.0029955	-1.2468E-06	-4.0211	-0.0016737	-4.0241	-0.001675	416.23229008979854	14.972	0.36197	14.862	14.706	15.068	-0.10981					19	12	2	0	0	0	0.31433	1	948	948		14.957	5.1929	1	114650			58311	8285	33431	33432	71305	71305					0.06274847091253832
YIHPKKVVP	9	Unmodified	_YIHPKKVVP_					0	0	0			REV__ENSG00000136875|ENST00000374198|PRPF4	REV__ENSG00000136875|ENST00000374198|PRPF4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2640380859375	2	540.831852	1079.64915	0.4935	0.0002669	1.4687	0.0007943	1.9622	0.0010612	540.8321329477222	105.27	0.099792	105.27	105.24	105.34	0.0031738					19	14	2	0	0	0	0.26145	1	27919	27919		2.0598	0	1	74090	+		58312	15834	33432	33433	71306	71306					0.11251202990615639
YIHPKKVVP	9	Unmodified	_YIHPKKVVP_					0	0	0			REV__ENSG00000136875|ENST00000374198|PRPF4	REV__ENSG00000136875|ENST00000374198|PRPF4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	540.831852	1079.64915	0.073852	3.9942E-05	2.1781	0.001178	2.2519	0.0012179	541.3349756113388	105.21	0.12591	105.21	105.16	105.28	0	-0.084437	0.00049411	NaN	2.0598	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72619	+		58313	15834	33432	33433							0.11251202990615639
YIHPKKVVP	9	Unmodified	_YIHPKKVVP_					0	0	0			REV__ENSG00000136875|ENST00000374198|PRPF4	REV__ENSG00000136875|ENST00000374198|PRPF4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	540.831852	1079.64915	0.26808	0.00014499	1.7505	0.00094674	2.0186	0.0010917	540.8320960933944	105.4	0.10216	105.4	105.35	105.45	-0.0027847	0.10596	3.1642E-05	NaN	2.0598	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61541	+		58314	15834	33432	33433							0.11251202990615639
YIHPLVFW	8	Unmodified	_YIHPLVFW_					0	0	0			REV__ENSG00000160218|ENST00000291574|TRAPPC10	REV__ENSG00000160218|ENST00000291574|TRAPPC10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.3010864257812	2	537.792195	1073.56984	0.11453	6.1595E-05	1.3456	0.00072367	1.4602	0.00078526	537.7929871864618	13.445	0.24362	13.377	13.275	13.519	-0.067496					13	8	3	0	0	0	0.3439	1	454	454		2.8892	0.31174	1	66906	+		58315	16890	33433	33434	71307	71307					0.03599556036465401
YIHPLVFW	8	Unmodified	_YIHPLVFW_					0	0	0			REV__ENSG00000160218|ENST00000291574|TRAPPC10	REV__ENSG00000160218|ENST00000291574|TRAPPC10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	537.792195	1073.56984	0.14885	8.0051E-05	0.48291	0.0002597	0.63176	0.00033975	537.7924678545378	13.411	0.20356	13.411	13.254	13.457	0	0.029323	-0.0005784	NaN	2.8892	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68094	+		58316	16890	33433	33434							0.03599556036465401
YIHPLVFW	8	Unmodified	_YIHPLVFW_					0	0	0			REV__ENSG00000160218|ENST00000291574|TRAPPC10	REV__ENSG00000160218|ENST00000291574|TRAPPC10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	537.792195	1073.56984	0.041854	2.2509E-05	1.6825	0.00090482	1.7243	0.00092733	537.7929955514946	13.455	0.16679	13.356	13.249	13.416	-0.099291	-0.025308	0.00071183	NaN	2.8892	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51380	+		58317	16890	33433	33434							0.03599556036465401
YIHTHTRIYI	10	Unmodified	_YIHTHTRIYI_					0	0	0			REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF	REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.5752258300781	3	439.575178	1315.70371	-0.50953	-0.00022398	0.27348	0.00012021	-0.23605	-0.00010376	439.57519984233164	34.265	1.0222	34.332	34.012	35.034	0.06636					91	36	4	0	0	0	0.34483	1	6720	6720		13.615	2.7159	1	691550	+		58318	20742	33434	33435	71308	71308					0.058481700713628015
YIHTHTRIYI	10	Unmodified	_YIHTHTRIYI_					0	0	0			REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF	REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	439.575178	1315.70371	-0.57245	-0.00025164	0.39997	0.00017581	-0.17249	-7.5822E-05	439.5752654740915	34.418	0.92976	34.418	34.104	35.033	0	0.061264	0.00028783	NaN	13.615	94	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	664550	+		58319	20742	33434	33435							0.058481700713628015
YIHVGAQLKS	10	Unmodified	_YIHVGAQLKS_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2609252929688	2	558.314023	1114.61349	0.042627	2.3799E-05	-1.4483	-0.00080858	-1.4056	-0.00078479	558.3151907499378	27.431	0.2614	27.42	27.266	27.527	-0.01156					13	8	2	0	0	0	0.31358	1	4638	4638		13.906	0	1	41978			58320	6939	33435	33436	71309	71309					0.06077120742929765
YIHVPRDH	8	Unmodified	_YIHVPRDH_					0	0	0		nc|ENSG00000143479|O43781-2|DYRK3;ENSG00000143479|ENST00000367109|DYRK3	nc|ENSG00000143479|O43781-2|DYRK3	nc|ENSG00000143479|O43781-2|DYRK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2847290039062	2	518.769783	1035.52501	0.18723	9.7129E-05	-1.3634	-0.00070727	-1.1761	-0.00061014	518.7689283192204	42.543	0.70995	42.634	42.385	43.095	0.091362					41	25	2	0	0	0	0.34218	1	9383	9383		5.2307	0	1	545590			58321	4520	33436	33437	71310	71310					0.0086712522313519
YIIAKLLETLP	11	Unmodified	_YIIAKLLETLP_					0	0	0		ENST00000566436.1_1_16:47628094-47631731:+|nuORF	ENST00000566436.1_1_16:47628094-47631731:+|nuORF	ENST00000566436.1_1_16:47628094-47631731:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.2633361816406	3	425.263718	1272.76933	-0.29592	-0.00012584	-1.1302	-0.00048065	-1.4262	-0.0006065	425.2635032025135	16.841	0.99629	16.727	16.448	17.444	-0.11434					53	35	3	0	0	0	0.41517	1	1498	1498		9.2438	0.79947	1	945600			58322	11981	33437	33438	71311	71311					0.14385146473728128
YIIDIVVEST	10	Unmodified	_YIIDIVVEST_					0	0	0		SCAPER|p.A872Pfs*4|1|0.42|ENSG00000140386|chr15:76665685-76665685|T/-|frameshift_variant;ENST00000303521.10_1_15:76673691-77134263:-|nuORF;ENSG00000140386|ENST00000563290|SCAPER;nc|ENSG00000140386|Q9BY12-3|SCAPER	SCAPER|p.A872Pfs*4|1|0.42|ENSG00000140386|chr15:76665685-76665685|T/-|frameshift_variant	SCAPER|p.A872Pfs*4|1|0.42|ENSG00000140386|chr15:76665685-76665685|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.2938842773438	2	576.313354	1150.61216	0.25067	0.00014447	-0.71136	-0.00040997	-0.46069	-0.0002655	576.3127825636158	94.784	0.48894	94.867	94.588	95.077	0.082779					58	39	2	0	0	0	0.37925	1	25293	25293		7.2892	7.2892	1	150670			58323	4298	33438	33439	71312	71312					0.04287441863516506
YIIFFVFLS	9	Unmodified	_YIIFFVFLS_					0	0	0			REV__ENSG00000105829|ENST00000222547|BET1	REV__ENSG00000105829|ENST00000222547|BET1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.28955078125	2	574.823161	1147.63177	0.56399	0.0003242	-2.1488	-0.0012352	-1.5848	-0.00091098	575.323650547111	65.79	0.56387	65.878	65.491	66.055	0.088882					25	20	2	0	0	0	0.24913	1	16470	16470		12.532	1.7076	1	170440	+		58324	14489	33439	33440	71313	71313					0.06385862664933484
YIIFRKIFL	9	Unmodified	_YIIFRKIFL_					0	0	0			REV__nc|ENSG00000132958|Q6XPS3-4|TPTE2	REV__nc|ENSG00000132958|Q6XPS3-4|TPTE2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.9119567871094	3	404.921627	1211.74305	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.219	1	25.187	24.687	25.687	-0.031408								0	0	0	0.25197	1	3984	3984		5.7319	0.43497	1		+		58325	22989	33440	33441	71314	71314					0.14564922092881716
YIIGPNYQSF	10	Unmodified	_YIIGPNYQSF_					0	0	0			REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.2982788085938	2	601.298039	1200.58152	0.59846	0.00035985	0.013457	8.0916E-06	0.61192	0.00036795	601.2979065755072	88.89	0.96889	88.89	88.609	89.578	0					116	45	4	0	0	0	0.080806	3	23509	23509;23556;23604		52.268	15.194	1	701470	+		58326	16386	33441	33442	71315;71316;71317	71315					-0.010742917308789401
YIIGPNYQSF	10	Unmodified	_YIIGPNYQSF_					0	0	0			REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.29736328125	2	601.298039	1200.58152	0.59846	0.00035985	0.013457	8.0916E-06	0.61192	0.00036795	601.2979065755072	88.89	0.96889	88.89	88.609	89.578	0					116	45	4	0	0	0	0.18324	1	23465	23465		52.268	19.963	1	701470	+		58327	16386	33441	33442	71318	71318					-0.010742917308789401
YIIGPNYQSF	10	Unmodified	_YIIGPNYQSF_					0	0	0			REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.29833984375	2	601.298039	1200.58152	0.57921	0.00034828	0.027394	1.6472E-05	0.6066	0.00036475	601.298107537173	88.736	1.6809	88.825	88.494	90.175	0.089203					189	100	5	0	0	0	0.080806	6	23452	23408;23452;23494;23543;23656;23715		52.268	52.268	1	1355300	+		58328	16386	33441	33442	71319;71320;71321;71322;71323;71324	71320					-0.010742917308789401
YIIGPNYQSF	10	Unmodified	_YIIGPNYQSF_					0	0	0			REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.2987670898438	2	601.298039	1200.58152	0.57921	0.00034828	0.027394	1.6472E-05	0.6066	0.00036475	601.298107537173	88.736	1.6809	88.825	88.494	90.175	0.089203					189	100	5	0	0	0	0.27337	1	23589	23589		29.082	29.082	1	1355300	+		58329	16386	33441	33442	71325	71325					-0.010742917308789401
YIIGPNYQSF	10	Unmodified	_YIIGPNYQSF_					0	0	0			REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.2982788085938	2	601.298039	1200.58152	0.45721	0.00027492	0.076923	4.6253E-05	0.53413	0.00032117	601.2979696553274	88.889	1.2531	88.888	88.541	89.794	-0.00081635					180	67	4	0	0	0	0.080806	2	23484	23484;23528		52.268	52.268	1	1857400	+		58330	16386	33441	33442	71326;71327	71326					-0.010742917308789401
YIIGPNYQSF	10	Unmodified	_YIIGPNYQSF_					0	0	0			REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	REV__nc|ENSG00000147408|Q8TDX6-2|CSGALNACT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.29736328125	2	601.298039	1200.58152	0.45721	0.00027492	0.076923	4.6253E-05	0.53413	0.00032117	601.2979696553274	88.889	1.2531	88.888	88.541	89.794	-0.00081635					180	67	4	0	0	0	0.18324	1	23432	23432		52.268	52.268	1	1857400	+		58331	16386	33441	33442	71328	71328					-0.010742917308789401
YIIGSDYPHH	10	Unmodified	_YIIGSDYPHH_					0	0	0			REV__ENSG00000197299|ENST00000355112|BLM	REV__ENSG00000197299|ENST00000355112|BLM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.2977905273438	2	601.285463	1200.55637	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.212	1	90.212	89.712	90.712	0.0003891								0	0	0	0.3664	1	23890	23890		7.9102	0	1		+		58332	18725	33442	33443	71329	71329					-0.03588346533456388
YIIIDGDPF	9	Unmodified	_YIIIDGDPF_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.7698364257812	2	526.768583	1051.52261	0.51876	0.00027326	0.61047	0.00032158	1.1292	0.00059484	526.7688675108207	70.177	0.43175	70.177	69.946	70.378	0					25	15	2	0	0	0	0.22883	1	17793	17793		19.439	0.18201	1	207740			58333	5950	33443	33444	71330	71330					-0.0010876802521124773
YIIIDGDPF	9	Unmodified	_YIIIDGDPF_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	526.768583	1051.52261	0.43995	0.00023175	0.7645	0.00040272	1.2045	0.00063447	526.7688966740177	70.181	0.58687	70.247	69.884	70.471	0.066048	0.025466	0.00023936	NaN	19.439	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177090			58334	5950	33443	33444							-0.0010876802521124773
YIIIDGDPF	9	Unmodified	_YIIIDGDPF_					0	0	0		ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3	ENSG00000165323|ENST00000525166|FAT3	ENSG00000165323|ENST00000525166|FAT3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	526.768583	1051.52261	0.52954	0.00027894	0.24901	0.00013117	0.77854	0.00041011	526.7686914363284	70.263	0.61053	70.241	69.913	70.524	-0.022087	0.019542	-0.00030374	NaN	19.439	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161980			58335	5950	33443	33444							-0.0010876802521124773
YIIPDEIFTI	10	Unmodified	_YIIPDEIFTI_					0	0	0		ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.5569152832031	3	408.55679	1222.64854	-0.042911	-1.7531E-05	0.11406	4.6599E-05	0.071146	2.9067E-05	408.5568428633173	21.572	0.70117	21.572	21.169	21.87	0					63	22	4	0	0	0	0.39782	1	2891	2891		3.8763	0.28927	1	271200			58336	7986	33444	33445	71331	71331					0.04612318760246126
YIIPDEIFTI	10	Unmodified	_YIIPDEIFTI_					0	0	0		ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.5565490722656	3	408.55679	1222.64854	0.017072	6.9748E-06	0.24348	9.9473E-05	0.26055	0.00010645	408.5568632583273	21.691	0.68264	21.642	21.29	21.972	-0.049377					53	24	3	0	0	0	0.40854	1	2874	2874		1.9064	0	1	255950			58337	7986	33444	33445	71332	71332					0.04612318760246126
YIIPQMADSL	10	Unmodified	_YIIPQMADSL_					0	0	0		ENSG00000108262|ENST00000225394|GIT1	ENSG00000108262|ENST00000225394|GIT1	ENSG00000108262|ENST00000225394|GIT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.794677734375	2	575.794275	1149.574	0.029083	1.6746E-05	-1.4795	-0.00085186	-1.4504	-0.00083512	575.7943711579103	95.239	1.5202	95.239	94.376	95.896	0					419	144	4	0	0	0	0.19885	1	25359	25359		32.786	2.1491	1	874170			58338	2171	33445	33446	71333	71333					0.005192326771975786
YIIPQMADSL	10	Unmodified	_YIIPQMADSL_					0	0	0		ENSG00000108262|ENST00000225394|GIT1	ENSG00000108262|ENST00000225394|GIT1	ENSG00000108262|ENST00000225394|GIT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7944946289062	2	575.794275	1149.574	0.24551	0.00014137	-1.6569	-0.00095404	-1.4114	-0.00081267	575.7942936658147	95.113	1.6184	95.195	94.339	95.957	0.082779					429	143	4	0	0	0	0.19885	3	25291	25291;25330;25370		32.786	2.5609	1	1396700			58339	2171	33445	33446	71334;71335;71336	71334					0.005192326771975786
YIIQHNIPLK	10	Unmodified	_YIIQHNIPLK_					0	0	0			REV__ENSG00000103035|ENST00000219313|PSMD7	REV__ENSG00000103035|ENST00000219313|PSMD7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.8694458007812	2	619.866423	1237.71829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.869	1	96.869	96.369	97.369	0								0	0	0	0.38198	1	25893	25893		1.4819	0.95714	1		+		58340	14348	33446	33447	71337	71337					0.10894242219501393
YIIQLHRPL	9	Unmodified	_YIIQLHRPL_					0	0	0			REV__ENSG00000068976|ENST00000164139|PYGM	REV__ENSG00000068976|ENST00000164139|PYGM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.8117065429688	2	576.848033	1151.68151	0.02982	1.7202E-05	-0.1309	-7.5509E-05	-0.10108	-5.8308E-05	576.8479079405286	29.698	0.45539	29.712	29.454	29.91	0.013474					25	15	2	0	0	0	0.25417	1	5282	5282		8.5933	0.68312	1	150750	+		58341	13709	33447	33448	71338	71338					0.11173990393581335
YIISPNYPK	9	Unmodified	_YIISPNYPK_					0	0	0		CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant;CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant;CUBN|p.K3401Rfs*11|1|0.02|ENSG00000107611|chr10:16835174-16835175|-/TTTTGAATGATTCC|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN	CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant	CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3079223632812	2	547.797675	1093.5808	0.64647	0.00035413	-2.9933	-0.0016397	-2.3469	-0.0012856	547.7975514000503	82.695	0.93646	82.769	82.627	83.564	0.073097					42	35	2	0	0	0	0.18803	1	21594	21594		25.399	6.1423	1	119300			58342	249	33448	33449	71339	71339					0.03774913620077314
YIISPNYPK	9	Unmodified	_YIISPNYPK_					0	0	0		CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant;CUBN|p.R3382Kfs*3|1|0.14|ENSG00000107611|chr10:16836269-16836270|TC/-|frameshift_variant;CUBN|p.K3401Rfs*11|1|0.02|ENSG00000107611|chr10:16835174-16835175|-/TTTTGAATGATTCC|frameshift_variant;ENSG00000107611|ENST00000377833|CUBN	CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant	CUBN|p.G3046Rfs*16|1|0.05|ENSG00000107611|chr10:16874474-16874475|-/T|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	547.797675	1093.5808	0.60435	0.00033106	-2.253	-0.0012342	-1.6487	-0.00090315	547.7974475718532	82.829	0.13641	82.829	82.708	82.844	0	0.030377	0.00068716	NaN	25.399	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68097			58343	249	33448	33449							0.03774913620077314
YIIWIDDGL	9	Unmodified	_YIIWIDDGL_					0	0	0			REV__ENSG00000104412|ENST00000220853|EMC2	REV__ENSG00000104412|ENST00000220853|EMC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.7797241210938	2	554.289682	1106.56481	0.50406	0.00027939	0.89105	0.0004939	1.3951	0.00077329	554.2902203154238	60.482	0.53853	60.482	60.281	60.819	0					34	19	2	0	0	0	0.22596	1	14743	14743		21.747	6.9084	1	1174900	+		58344	14408	33449	33450	71340	71340					0.01579207383178982
YIIWIDDGL	9	Unmodified	_YIIWIDDGL_					0	0	0			REV__ENSG00000104412|ENST00000220853|EMC2	REV__ENSG00000104412|ENST00000220853|EMC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	554.289682	1106.56481	0.39592	0.00021945	1.2451	0.00069012	1.641	0.00090957	554.2904138505479	60.387	0.65541	60.482	60.268	60.923	0.095093	-0.0056222	0.00030561	NaN	21.747	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	884270	+		58345	14408	33449	33450							0.01579207383178982
YIIWIDDGL	9	Unmodified	_YIIWIDDGL_					0	0	0			REV__ENSG00000104412|ENST00000220853|EMC2	REV__ENSG00000104412|ENST00000220853|EMC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	554.289682	1106.56481	0.57526	0.00031886	0.59616	0.00033044	1.1714	0.0006493	554.2899128626152	60.508	0.58694	60.499	60.275	60.862	-0.0094566	0.011252	-0.00041375	NaN	21.747	40	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1357200	+		58346	14408	33449	33450							0.01579207383178982
YIKFSKTIE	9	Unmodified	_YIKFSKTIE_					0	0	0		nc|ENSG00000178852|Q8IY85-2|EFCAB13;ENSG00000178852|ENST00000331493|EFCAB13;ENST00000520776.5_1_17:45405719-45473360:+|nuORF;ENST00000518081.1_1_17:45412615-45417252:+|nuORF	nc|ENSG00000178852|Q8IY85-2|EFCAB13	nc|ENSG00000178852|Q8IY85-2|EFCAB13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.26513671875	2	564.818607	1127.62266	0.56071	0.0003167	0.42801	0.00024175	0.98873	0.00055845	565.3202140056737	74.507	0.35719	74.507	74.374	74.731	0					15	12	2	0	0	0	0.23783	1	19083	19083		18.135	7.3111	1	148820			58347	7079	33450	33451	71341	71341					0.06395469308608881
YIKHPVSL	8	Unmodified	_YIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7821044921875	2	478.781828	955.549102	0.2873	0.00013755	0.14517	6.9505E-05	0.43247	0.00020706	478.7817847490458	35.877	0.6418	35.877	35.665	36.307	0					53	23	3	0	0	0	0.04227	1	7255	7255		81.89	37.483	1	829130			58348	1486	33451	33452	71342	71342					0.06954965656814238
YIKHPVSL	8	Unmodified	_YIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	478.7818298339844	2	478.781828	955.549102	0.34632	0.00016581	0.14201	6.7994E-05	0.48834	0.00023381	478.78178689611013	35.824	0.60975	35.907	35.624	36.233	0.082355					49	21	3	0	0	0	0.027083	2	7248	7191;7248		92.491	37.483	1	886050			58349	1486	33451	33452	71343;71344	71344					0.06954965656814238
YIKHPVSL	8	Unmodified	_YIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	478.7819519042969	2	478.781828	955.549102	0.3265	0.00015632	0.15944	7.6338E-05	0.48594	0.00023266	478.78182737588827	35.764	0.57532	35.85	35.62	36.196	0.08625					51	20	3	0	0	0	0.04227	2	7181	7181;7232		81.89	37.483	1	1058600			58350	1486	33451	33452	71345;71346	71345					0.06954965656814238
YIKMDKRVF	9	Unmodified	_YIKMDKRVF_					0	0	0		L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|27|2|sense	L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|27|2|sense	L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|27|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3341674804688	2	600.333901	1198.65325	0.70395	0.0004226	0.49544	0.00029743	1.1994	0.00072003	600.3340324848331	84.504	1.742	84.504	84.163	85.905	0					135	66	3	0	0	0	0.31417	1	22140	22140		6.7232	0	1	1184300			58351	12448	33452	33453	71347	71347					0.06186924421990625
YIKNELQTWI	10	Unmodified	_YIKNELQTWI_					0	0	0		ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	ENSG00000151320|ENST00000280979|AKAP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	436.7478332519531	3	436.571322	1306.69214	0.1518	6.627E-05	-0.046302	-2.0214E-05	0.10549	4.6056E-05	436.5712687194947	65.67	0.62047	65.759	65.519	66.139	0.088882					53	22	4	0	0	0	0.32082	1	16314	16314		3.3196	0.24738	1	423370			58352	4952	33453	33454	71348	71348					0.051059282573760356
YIKQERIM	8	Unmodified	_YIKQERIM_					0	0	0			REV__ENSG00000172361|ENST00000398545|CFAP53	REV__ENSG00000172361|ENST00000398545|CFAP53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2454223632812	2	540.797152	1079.57975	0.63947	0.00034582	0.86967	0.00047032	1.5091	0.00081614	541.3001655565449	70.809	0.11513	70.784	70.718	70.833	-0.024864					7	3	3	0	0	0	0.3366	1	17933	17933		18.135	2.2878	1	175150	+		58353	17707	33454	33455	71349	71349					0.043143759795157166
YIKRFKTF	8	Unmodified	_YIKRFKTF_					0	0	0			REV__ENSG00000157014|ENST00000448281|TATDN2	REV__ENSG00000157014|ENST00000448281|TATDN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.26611328125	2	551.824027	1101.6335	0.59113	0.0003262	0.18375	0.0001014	0.77488	0.0004276	552.3258159318776	77.282	0.30066	77.282	77.117	77.418	0					15	10	2	0	0	0	0.34185	1	19927	19927		10.183	0.83596	1	107660	+		58354	16767	33455	33456	71350	71350					0.08674916473546546
YIKSLRSGLLG	11	Unmodified	_YIKSLRSGLLG_					0	0	0			REV__nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	REV__nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3001708984375	2	603.86388	1205.71321	0.0774	4.6739E-05	0.61052	0.00036867	0.68792	0.00041541	603.8640689116049	65.169	0.49339	65.258	65.11	65.604	0.088882					34	17	3	0	0	0	0.32996	1	16244	16244		8.1555	0.54658	1	323620	+		58355	13833	33456	33457	71351	71351					0.1185793835691129
YIKSLRSGLLG	11	Unmodified	_YIKSLRSGLLG_					0	0	0			REV__nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	REV__nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	603.86388	1205.71321	0.2864	0.00017295	0.18083	0.0001092	0.46723	0.00028214	603.8637654266695	65.29	0.46973	65.29	65.076	65.545	0	0.0047843	-0.0001866	NaN	8.1555	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368530	+		58356	13833	33456	33457							0.1185793835691129
YIKSLRSGLLG	11	Unmodified	_YIKSLRSGLLG_					0	0	0			REV__nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	REV__nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	603.86388	1205.71321	0.15764	9.5191E-05	0.33466	0.00020209	0.49229	0.00029728	603.8637704509048	65.318	0.4879	65.307	65.098	65.586	-0.011337	0.022189	-8.2028E-07	NaN	8.1555	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345880	+		58357	13833	33456	33457							0.1185793835691129
YIKTRWLY	8	Unmodified	_YIKTRWLY_					0	0	0		ENSG00000238227|ENST00000418388|TMEM250	ENSG00000238227|ENST00000418388|TMEM250	ENSG00000238227|ENST00000418388|TMEM250	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.8434448242188	2	571.821484	1141.62842	0.34667	0.00019823	0.2907	0.00016623	0.63737	0.00036446	571.8217299923862	41.151	1.0937	41.241	40.417	41.511	0.090252					93	40	3	0	0	0	0.31934	1	8660	8660		24.674	10.092	1	711850			58358	8509	33457	33458	71352	71352					0.06326612610951088
YIKVGSASPF	10	Unmodified	_YIKVGSASPF_					0	0	0		ENST00000502555.5_1_17:48244836-48246708:+|nuORF;ENSG00000108823|ENST00000262018|SGCA	ENST00000502555.5_1_17:48244836-48246708:+|nuORF	ENST00000502555.5_1_17:48244836-48246708:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.3059692382812	2	534.78985	1067.56515	1.2197	0.00065229	0.24306	0.00012999	1.4628	0.00078227	534.7894573815037	56.05	0.36385	56.05	55.82	56.184	0					20	12	2	0	0	0	0.1715	1	13407	13407		36.127	8.4982	1	738130			58359	2216	33458	33459	71353	71353					0.034066271030496864
YILAKAFAF	9	Unmodified	_YILAKAFAF_					0	0	0			REV__ENSG00000111404|ENST00000538724|RERGL	REV__ENSG00000111404|ENST00000538724|RERGL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2831420898438	2	522.299853	1042.58515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.661	1	62.758	62.258	63.258	0.096985								0	0	0	0.22457	1	15465	15465		14.582	1.0738	1		+		58360	14721	33459	33460	71354	71354					0.06556422833659781
YILCLEQII	9	Unmodified	_YILCLEQII_					0	0	0			REV__ENST00000285873.7_1_5:154305630-154308090:-|nuORF	REV__ENST00000285873.7_1_5:154305630-154308090:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8294067382812	2	554.309561	1106.60457	0.40897	0.00022669	2.5686	0.0014238	2.9776	0.0016505	554.309292257352	90.399	0.077126	90.399	90.379	90.456	0.0003891					5	4	2	0	0	0	0.23783	1	23961	23961		18.135	7.0205	1	69790	+		58361	19733	33460	33461	71355	71355					0.05553011062261248
YILDFQYPF	9	Unmodified	_YILDFQYPF_					0	0	0		ENSG00000130338|ENST00000367097|TULP4	ENSG00000130338|ENST00000367097|TULP4	ENSG00000130338|ENST00000367097|TULP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.2379760742188	2	603.297507	1204.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.939	1	76.939	76.439	77.439	0								0	0	0	0.19534	1	19835	19835		24.021	8.1734	1				58362	3469	33461	33462	71356	71356					-0.013645060997760083
YILDFQYPF	9	Unmodified	_YILDFQYPF_					0	0	0		ENSG00000130338|ENST00000367097|TULP4	ENSG00000130338|ENST00000367097|TULP4	ENSG00000130338|ENST00000367097|TULP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.2997436523438	2	603.297507	1204.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.713	1	87.713	87.213	88.213	0								0	0	0	0.26044	1	23140	23140		2.9952	0.69251	1				58363	3469	33461	33462	71357	71357					-0.013645060997760083
YILDFQYPF	9	Unmodified	_YILDFQYPF_					0	0	0		ENSG00000130338|ENST00000367097|TULP4	ENSG00000130338|ENST00000367097|TULP4	ENSG00000130338|ENST00000367097|TULP4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.2991943359375	2	603.297507	1204.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.826	1	80.891	80.391	81.391	0.065094								0	0	0	0.22666	1	21015	21015		13.906	3.0821	1				58364	3469	33461	33462	71358	71358					-0.013645060997760083
YILGTQKQQGL	11	Unmodified	_YILGTQKQQGL_					0	0	0		ENSG00000134398|ENST00000256797|ERN2	ENSG00000134398|ENST00000256797|ERN2	ENSG00000134398|ENST00000256797|ERN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.49212646484375	3	416.903072	1247.68739	0.23207	9.675E-05	1.8391	0.00076671	2.0711	0.00086346	417.2390611994469	48.111	0.11866	48.111	48.012	48.131	0					5	3	2	0	0	0	0.329	1	10982	10982		4.7159	0	1	196880			58365	3782	33462	33463	71359	71359					0.07345044114595112
YILGYFLT	8	Unmodified	_YILGYFLT_					0	0	0		ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	ENSG00000060642|ENST00000674202|PIGV	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.8028259277344	2	495.270761	988.52697	0.52051	0.00025779	-1.2264	-0.0006074	-0.70589	-0.00034961	495.26995145852027	56.981	0.42183	56.981	56.744	57.165	0					28	15	2	0	0	0	0.31934	1	13722	13722		24.674	7.5873	1	263020			58366	748	33463	33464	71360	71360					0.032247411883759014
YILHLKSYD	9	Unmodified	_YILHLKSYD_					0	0	0		LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant;ENSG00000081479|ENST00000649046|LRP2	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8176879882812	2	576.308406	1150.60226	0.36669	0.00021133	-0.54841	-0.00031605	-0.18172	-0.00010473	576.3080803345399	69.181	0.38982	69.253	69.044	69.434	0.071938					21	13	2	0	0	0	0.23784	1	17413	17413		19.257	0	1	180460			58367	1183	33464	33465	71361	71361					0.032982986488150345
YILIIYENIL	10	Unmodified	_YILIIYENIL_					0	0	0		nc|ENSG00000164100|O95803-2|NDST3;nc|ENSG00000164100|O95803-3|NDST3;ENSG00000164100|ENST00000296499|NDST3	nc|ENSG00000164100|O95803-2|NDST3	nc|ENSG00000164100|O95803-2|NDST3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8719482421875	2	633.87084	1265.72713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.48	1	116.5	116	117	0.020988								0	0	0	0.38201	1	30221	30221		0.45834	0	1				58368	5789	33465	33466	71362	71362					0.10489171065341907
YILIIYENIL	10	Unmodified	_YILIIYENIL_					0	0	0		nc|ENSG00000164100|O95803-2|NDST3;nc|ENSG00000164100|O95803-3|NDST3;ENSG00000164100|ENST00000296499|NDST3	nc|ENSG00000164100|O95803-2|NDST3	nc|ENSG00000164100|O95803-2|NDST3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8720703125	2	633.87084	1265.72713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117	1	117.02	116.52	117.52	0.020988								0	0	0	0.38201	1	30343	30343		0.45834	0	1				58369	5789	33465	33466	71363	71363					0.10489171065341907
YILIWESF	8	Unmodified	_YILIWESF_					0	0	0			REV__NDUFAF6|p.I301Ffs*40|1|0.13|ENSG00000156170|chr8:95057833-95057833|A/-|frameshift_variant	REV__NDUFAF6|p.I301Ffs*40|1|0.13|ENSG00000156170|chr8:95057833-95057833|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.8053588867188	2	535.781493	1069.54843	0.5842	0.000313	-3.483	-0.0018661	-2.8988	-0.0015531	536.2798856420466	72.63	0.29597	72.63	72.4	72.696	0					16	10	2	0	0	0	0.29134	1	18538	18538		34.187	8.788	1	118080	+		58370	23274	33466	33467	71364	71364					0.016441262170928894
YILIWESF	8	Unmodified	_YILIWESF_					0	0	0			REV__NDUFAF6|p.I301Ffs*40|1|0.13|ENSG00000156170|chr8:95057833-95057833|A/-|frameshift_variant	REV__NDUFAF6|p.I301Ffs*40|1|0.13|ENSG00000156170|chr8:95057833-95057833|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.8057250976562	2	535.781493	1069.54843	0.4774	0.00025578	-3.0788	-0.0016496	-2.6014	-0.0013938	535.7803667940408	72.533	0.33122	72.587	72.434	72.765	0.053833					16	11	2	0	0	0	0.26518	1	18524	18524		42.968	12.743	1	69035	+		58371	23274	33466	33467	71365	71365					0.016441262170928894
YILKKNMIL	9	Unmodified	_YILKKNMIL_					0	0	0		nc|ENSG00000101019|Q9NVA1-3|UQCC1;nc|ENSG00000101019|Q9NVA1-5|UQCC1;nc|ENSG00000101019|Q9NVA1-4|UQCC1;ENSG00000101019|ENST00000374385|UQCC1	nc|ENSG00000101019|Q9NVA1-3|UQCC1	nc|ENSG00000101019|Q9NVA1-3|UQCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.819091796875	2	568.34902	1134.68349	0.22499	0.00012787	-0.72294	-0.00041088	-0.49795	-0.00028301	568.3484278096738	44.009	0.69859	44.093	43.866	44.565	0.083992					42	25	3	0	0	0	0.25811	1	9826	9826		5.2307	0	1	769380			58372	1659	33467	33468	71366	71366					0.12153283087195632
YILKKNMIL	9	Unmodified	_YILKKNMIL_					0	0	0		nc|ENSG00000101019|Q9NVA1-3|UQCC1;nc|ENSG00000101019|Q9NVA1-5|UQCC1;nc|ENSG00000101019|Q9NVA1-4|UQCC1;ENSG00000101019|ENST00000374385|UQCC1	nc|ENSG00000101019|Q9NVA1-3|UQCC1	nc|ENSG00000101019|Q9NVA1-3|UQCC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	568.34902	1134.68349	0.2474	0.00014061	0.0058047	3.2991E-06	0.2532	0.00014391	568.3486042550576	44.213	0.44915	44.213	43.959	44.408	0	0.052005	0.00073192	NaN	5.2307	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523340			58373	1659	33467	33468							0.12153283087195632
YILLAHSTL	9	Unmodified	_YILLAHSTL_					0	0	0		ENSG00000188124|ENST00000641124|OR2AG2	ENSG00000188124|ENST00000641124|OR2AG2	ENSG00000188124|ENST00000641124|OR2AG2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.248291015625	2	515.800217	1029.58588	0.29395	0.00015162	-0.004577	-2.3608E-06	0.28937	0.00014926	515.8003752343739	58.929	0.81101	59.02	58.677	59.488	0.091301					48	28	3	0	0	0	0.2322	1	14348	14348		20.454	8.8133	1	418690			58374	7730	33468	33469	71367	71367					0.07227217482704873
YILLGKLR	8	Unmodified	_YILLGKLR_					0	0	0			REV__ENST00000372523.1_1_20:44512804-44512897:+|nuORF	REV__ENST00000372523.1_1_20:44512804-44512897:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.30267333984375	2	488.32112	974.627687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.166	1	35.166	34.666	35.666	0								0	0	0	0.35014	1	7013	7013		14.582	0	1		+		58375	20413	33469	33470	71368	71368					0.13935817961896646
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3681640625	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.65	1	113.65	113.15	114.15	0								0	0	0	0.38201	1	29514	29514		0.45834	0	1				58376	8908	33470	33471	71369	71369					0.10020911993342452
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3690185546875	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.29	1	114.29	113.79	114.79	0								0	0	0	0.38201	1	29653	29653		0.45834	0	1				58377	8908	33470	33471	71370	71370					0.10020911993342452
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3683471679688	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.45	1	114.45	113.95	114.95	0								0	0	0	0.38201	1	29695	29695		0.45834	0	1				58378	8908	33470	33471	71371	71371					0.10020911993342452
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3685302734375	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.82	1	114.82	114.32	115.32	0								0	0	0	0.38201	1	29777	29777		0.45834	0	1				58379	8908	33470	33471	71372	71372					0.10020911993342452
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3690795898438	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119	1	119	118.5	119.5	0								0	0	0	0.38201	1	30723	30723		0.45834	0	1				58380	8908	33470	33471	71373	71373					0.10020911993342452
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3682861328125	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114	1	114.02	113.52	114.52	0.016708								0	0	0	0.38201	1	29654	29654		0.45834	0	1				58381	8908	33470	33471	71374	71374					0.10020911993342452
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.369140625	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.26	1	114.28	113.78	114.78	0.016708								0	0	0	0.38201	1	29716	29716		0.45834	0	1				58382	8908	33470	33471	71375	71375					0.10020911993342452
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3682861328125	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.42	1	114.44	113.94	114.94	0.016708								0	0	0	0.38201	1	29754	29754		0.45834	0	1				58383	8908	33470	33471	71376	71376					0.10020911993342452
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3681030273438	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.53	1	114.55	114.05	115.05	0.016708								0	0	0	0.38201	1	29783	29783		0.45834	0	1				58384	8908	33470	33471	71377	71377					0.10020911993342452
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.368896484375	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.91	1	114.93	114.43	115.43	0.016708								0	0	0	0.38201	1	29872	29872		0.45834	0	1				58385	8908	33470	33471	71378	71378					0.10020911993342452
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.368896484375	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.04	1	115.06	114.56	115.56	0.018738								0	0	0	0.38201	1	29902	29902		0.45834	0	1				58386	8908	33470	33471	71379	71379					0.10020911993342452
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.368896484375	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.04	1	116.06	115.56	116.56	0.020988								0	0	0	0.38201	1	30118	30118		0.45834	0	1				58387	8908	33470	33471	71380	71380					0.10020911993342452
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3690795898438	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.28	1	116.3	115.8	116.8	0.020988								0	0	0	0.38201	1	30177	30177		0.45834	0	1				58388	8908	33470	33471	71381	71381					0.10020911993342452
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3680419921875	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.58	1	117.6	117.1	118.1	0.023476								0	0	0	0.38201	1	30473	30473		0.45834	0	1				58389	8908	33470	33471	71382	71382					0.10020911993342452
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.368896484375	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.79	1	118.82	118.32	119.32	0.026253								0	0	0	0.38201	1	30750	30750		0.45834	0	1				58390	8908	33470	33471	71383	71383					0.10020911993342452
YILLLLFHFS	10	Unmodified	_YILLLLFHFS_					0	0	0		ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	ENST00000249373.7_1_7:128852889-128853084:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3690185546875	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.38	1	119.41	118.91	119.91	0.027756								0	0	0	0.38201	1	30879	30879		0.45834	0	1				58391	8908	33470	33471	71384	71384					0.10020911993342452
YILLSGNPPF	10	Unmodified	_YILLSGNPPF_					0	0	0		ENST00000475665.5_1_3:49896753-49898557:-|nuORF;nc|ENSG00000164076|Q8NCB2-3|CAMKV;ENSG00000164076|ENST00000477224|CAMKV	ENST00000475665.5_1_3:49896753-49898557:-|nuORF	ENST00000475665.5_1_3:49896753-49898557:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.334228515625	2	560.8055	1119.59645	0.53578	0.00030047	-2.725	-0.0015282	-2.1892	-0.0012277	561.3039476994902	78.532	2.4571	78.532	77.496	79.953	0					155	95	2	0	0	0	0.21885	1	20210	20210		42.095	15.211	1	192350			58392	5782	33471	33472	71385	71385					0.04143200137150416
YILLSGNPPF	10	Unmodified	_YILLSGNPPF_					0	0	0		ENST00000475665.5_1_3:49896753-49898557:-|nuORF;nc|ENSG00000164076|Q8NCB2-3|CAMKV;ENSG00000164076|ENST00000477224|CAMKV	ENST00000475665.5_1_3:49896753-49898557:-|nuORF	ENST00000475665.5_1_3:49896753-49898557:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.3343505859375	2	560.8055	1119.59645	0.69346	0.0003889	2.6932	0.0015103	3.3866	0.0018992	561.3074991761799	77.543	0.95635	77.598	77.18	78.137	0.055412					66	34	3	0	0	0	0.2504	1	20091	20091		34.102	5.6156	1	196990			58393	5782	33471	33472	71386	71386					0.04143200137150416
YILLSGNPPF	10	Unmodified	_YILLSGNPPF_					0	0	0		ENST00000475665.5_1_3:49896753-49898557:-|nuORF;nc|ENSG00000164076|Q8NCB2-3|CAMKV;ENSG00000164076|ENST00000477224|CAMKV	ENST00000475665.5_1_3:49896753-49898557:-|nuORF	ENST00000475665.5_1_3:49896753-49898557:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.33447265625	2	560.8055	1119.59645	0.72855	0.00040858	2.4759	0.0013885	3.2045	0.0017971	560.8058856740703	77.641	0.93487	77.61	77.186	78.121	-0.031334					57	33	3	0	0	0	0.2504	1	20152	20152		34.102	13.649	1	151160			58394	5782	33471	33472	71387	71387					0.04143200137150416
YILLSGSVFI	10	Unmodified	_YILLSGSVFI_					0	0	0		ENSG00000109756|ENST00000691494|RAPGEF2	ENSG00000109756|ENST00000691494|RAPGEF2	ENSG00000109756|ENST00000691494|RAPGEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3055419921875	2	556.323525	1110.6325	0.5037	0.00028022	0.34232	0.00019044	0.84602	0.00047066	556.3234106986116	74.788	0.36631	74.757	74.585	74.951	-0.031487					20	12	2	0	0	0	0.2892	1	19190	19190		21.747	4.8044	1	210980			58395	2269	33472	33473	71388	71388					0.08160657314010678
YILMKVPK	8	Unmodified	_YILMKVPK_					0	0	0			REV__ENSG00000115806|ENST00000234160|GORASP2	REV__ENSG00000115806|ENST00000234160|GORASP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.30419921875	2	496.304081	990.59361	0.41687	0.0002069	-0.18064	-8.9651E-05	0.23624	0.00011725	496.30387669744533	74.068	3.1764	74.068	73.191	76.367	0					302	112	4	0	0	0	0.45942	1	19584	19584		2.5775	0	1	4670700	+		58396	14896	33473	33474	71389	71389					0.09793653478629949
YILPNFFSNS	10	Unmodified	_YILPNFFSNS_					0	0	0			REV__ENSG00000157219|ENST00000287907|HTR5A	REV__ENSG00000157219|ENST00000287907|HTR5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.29833984375	2	601.298039	1200.58152	0.59846	0.00035985	0.013457	8.0916E-06	0.61192	0.00036795	601.2979065755072	88.89	0.96889	88.89	88.609	89.578	0					116	45	4	0	0	0	0.38233	1	23656	23656		6.7232	0	1	701470	+		58397	16777	33474	33475	71390	71390					-0.010742917308562028
YILPNLLPTGL	11	Unmodified	_YILPNLLPTGL_					0	0	0			REV__ENSG00000172772|ENST00000395079|OR10W1	REV__ENSG00000172772|ENST00000395079|OR10W1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.22784423828125	3	405.244547	1212.71181	0.20149	8.1652E-05	0.38757	0.00015706	0.58905	0.00023871	405.5777869166506	36.998	0.080116	36.998	36.959	37.039	0					4	2	2	0	0	0	0.33085	1	7581	7581		1.3296	0.1363	1	19804	+		58398	17731	33475	33476	71391	71391					0.11396304268123458
YILQDAVYTL	10	Unmodified	_YILQDAVYTL_					0	0	0		ERVL-E-int_dup1261|chr2:154469035-154470401:+|1.5917130338343672|0.0973889572275544|4.03|523.0|5|1|sense	ERVL-E-int_dup1261|chr2:154469035-154470401:+|1.5917130338343672|0.0973889572275544|4.03|523.0|5|1|sense	ERVL-E-int_dup1261|chr2:154469035-154470401:+|1.5917130338343672|0.0973889572275544|4.03|523.0|5|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.8090209960938	2	599.821347	1197.62814	0.4585	0.00027502	0.25308	0.00015181	0.71158	0.00042682	599.8213076727104	62.391	0.29882	62.382	62.191	62.49	-0.0085526					14	10	2	0	0	0	0.31889	1	15325	15325		6.2058	0	1	85903			58399	12338	33476	33477	71392	71392					0.037231481004027955
YILRELPKV	9	Unmodified	_YILRELPKV_					0	0	0		nc|ENSG00000196642|Q3YEC7-3|RABL6;nc|ENSG00000196642|Q3YEC7-4|RABL6;nc|ENSG00000196642|Q3YEC7-5|RABL6;nc|ENSG00000196642|Q3YEC7-6|RABL6;ENSG00000196642|ENST00000311502|RABL6;nc|ENSG00000196642|Q3YEC7-2|RABL6	nc|ENSG00000196642|Q3YEC7-3|RABL6	nc|ENSG00000196642|Q3YEC7-3|RABL6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.3115234375	2	565.850242	1129.68593	0.51517	0.00029151	-0.32698	-0.00018502	0.1882	0.00010649	565.8501061989734	48.087	0.40479	48.087	48.012	48.417	0					18	13	2	0	0	0	0.24848	1	11021	11021		9.3831	0	1	305470			58400	12897	33477	33478	71393	71393					0.12627454816470163
YILSPLSYK	9	Unmodified	_YILSPLSYK_					0	0	0		nc|ENSG00000077713|Q8WUT9-2|SLC25A43;ENSG00000077713|ENST00000217909|SLC25A43	nc|ENSG00000077713|Q8WUT9-2|SLC25A43	nc|ENSG00000077713|Q8WUT9-2|SLC25A43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7691650390625	2	542.307875	1082.6012	1.1514	0.00062443	0.38549	0.00020906	1.5369	0.00083349	542.3079777924844	55.975	0.47685	55.975	55.707	56.184	0					33	16	3	0	0	0	0.20167	1	13376	13376		29.082	3.6823	1	1355000			58401	1097	33478	33479	71394	71394					0.06320084279900584
YILSPLSYK	9	Unmodified	_YILSPLSYK_					0	0	0		nc|ENSG00000077713|Q8WUT9-2|SLC25A43;ENSG00000077713|ENST00000217909|SLC25A43	nc|ENSG00000077713|Q8WUT9-2|SLC25A43	nc|ENSG00000077713|Q8WUT9-2|SLC25A43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.7691650390625	2	542.307875	1082.6012	1.1001	0.00059657	0.32188	0.00017456	1.4219	0.00077112	542.3079548852265	56.114	0.499	56.095	55.798	56.297	-0.019081					40	17	3	0	0	0	0.20881	1	13407	13407		27.629	2.2295	1	980390			58402	1097	33478	33479	71395	71395					0.06320084279900584
YILTDNALR	9	Unmodified	_YILTDNALR_					0	0	0			REV__ENSG00000101846|ENST00000674429|STS	REV__ENSG00000101846|ENST00000674429|STS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7879638671875	2	539.798206	1077.58186	0.54779	0.0002957	0.66457	0.00035873	1.2124	0.00065443	539.7986033020511	52.749	0.65424	52.749	52.574	53.228	0					38	23	3	0	0	0	0.23775	1	12489	12489		18.135	4.2289	1	497090	+		58403	14289	33479	33480	71396	71396					0.046171279889904326
YILTDNALR	9	Unmodified	_YILTDNALR_					0	0	0			REV__ENSG00000101846|ENST00000674429|STS	REV__ENSG00000101846|ENST00000674429|STS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7877807617188	2	539.798206	1077.58186	0.64449	0.00034789	0.48242	0.00026041	1.1269	0.0006083	539.7983388164581	52.659	0.45488	52.709	52.553	53.008	0.050575					34	16	3	0	0	0	0.23775	1	12469	12469		18.135	4.2289	1	429720	+		58404	14289	33479	33480	71397	71397					0.046171279889904326
YILTPAFLF	9	Unmodified	_YILTPAFLF_					0	0	0			REV__nc|ENSG00000057252|P35610-3|SOAT1	REV__nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8080444335938	2	542.807511	1083.60047	0.38438	0.00020864	0.65225	0.00035405	1.0366	0.00056269	542.8075942277254	76.282	1.8296	76.282	75.154	76.983	0					115	66	3	0	0	0	0.26879	1	19790	19790		13.508	4.1604	1	417460	+		58405	13600	33480	33481	71398	71398					0.06201289630848805
YILTPAFLF	9	Unmodified	_YILTPAFLF_					0	0	0			REV__nc|ENSG00000057252|P35610-3|SOAT1	REV__nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8078002929688	2	542.807511	1083.60047	0.77384	0.00042005	0.16144	8.7628E-05	0.93528	0.00050768	542.807442506029	78.395	3.3081	78.395	77.204	80.513	0					287	127	4	0	0	0	0.30166	4	20389	20389;20437;20489;20534		8.5933	3.3626	1	1734500	+		58406	13600	33480	33481	71399;71400;71401;71402	71399					0.06201289630848805
YILTPAFLF	9	Unmodified	_YILTPAFLF_					0	0	0			REV__nc|ENSG00000057252|P35610-3|SOAT1	REV__nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8079223632812	2	542.807511	1083.60047	0.75743	0.00041114	0.28766	0.00015615	1.0451	0.00056728	542.8075322403537	78.36	2.9728	78.419	77.513	80.486	0.058159					343	116	4	0	0	0	0.30166	2	20427	20427;20804		8.5933	8.5933	1	1386000	+		58407	13600	33480	33481	71403;71404	71403					0.06201289630848805
YILTPAFLF	9	Unmodified	_YILTPAFLF_					0	0	0			REV__nc|ENSG00000057252|P35610-3|SOAT1	REV__nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8078002929688	2	542.807511	1083.60047	0.93496	0.0005075	-0.0086134	-4.6754E-06	0.92634	0.00050283	542.8073887217688	78.34	3.3554	78.31	77.238	80.594	-0.030434					321	127	4	0	0	0	0.30166	4	20437	20437;20488;20534;20578		8.5933	3.3626	1	1617500	+		58408	13600	33480	33481	71405;71406;71407;71408	71405					0.06201289630848805
YILTPAFLF	9	Unmodified	_YILTPAFLF_					0	0	0			REV__nc|ENSG00000057252|P35610-3|SOAT1	REV__nc|ENSG00000057252|P35610-3|SOAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8084716796875	2	542.807511	1083.60047	0.5809	0.00031532	1.289	0.00069968	1.8699	0.001015	542.8080753226324	81.479	0.54265	81.454	81.228	81.77	-0.02404					43	23	2	0	0	0	0.32733	1	21199	21199		4.756	0.42677	1	226740	+		58409	13600	33480	33481	71409	71409					0.06201289630848805
YILYSDSMK	9	Unmodified	_YILYSDSMK_					0	0	0		ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	ENSG00000148158|ENST00000374232|SNX30	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.28857421875	2	560.273175	1118.5318	0.52289	0.00029296	-2.267	-0.0012701	-1.7441	-0.00097716	560.2731589783893	64.307	1.1869	64.307	63.889	65.076	0					148	43	5	0	0	0	0.24581	1	16114	16114		16.942	1.0951	1	2194300			58410	4793	33481	33482	71410	71410					-0.02272742731179278
YIMNYIIGK	9	Oxidation (M)	_YIM(Oxidation (M))NYIIGK_		YIM(1)NYIIGK		YIM(78)NYIIGK	0	0	1		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.8157958984375	2	565.79936	1129.58417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.13	1	46.13	45.63	46.63	0								0	0	0	0.011479	1	10369	10369		78.149	23.376	1				58411	2197	33482	33483	71411	71411		270			0.024558404024446645
YIMNYIIGK	9	Oxidation (M)	_YIM(Oxidation (M))NYIIGK_		YIM(1)NYIIGK		YIM(85)NYIIGK	0	0	1		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.8158569335938	2	565.79936	1129.58417	0.15381	8.7028E-05	2.3474	0.0013281	2.5012	0.0014152	565.7997784248521	45.869	0.17223	45.929	45.871	46.043	0.059837					9	5	2	0	0	0	0.006189	1	10289	10289		85.272	45.315	1	217820			58412	2197	33482	33483	71412	71412		270			0.024558404024446645
YIMNYIIGK	9	Oxidation (M)	_YIM(Oxidation (M))NYIIGK_					0	0	1		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	565.79936	1129.58417	0.46828	0.00026495	1.3505	0.0007641	1.8188	0.0010291	565.7995765281045	45.905	0.20222	45.97	45.84	46.043	0.065048	0.020568	-0.00037435	NaN	85.272	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191580			58413	2197	33482	33483				270			0.024558404024446645
YIMWCIMF	8	Unmodified	_YIMWCIMF_					0	0	0			REV__ENSG00000186908|ENST00000426126|ZDHHC17	REV__ENSG00000186908|ENST00000426126|ZDHHC17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3299560546875	2	553.747227	1105.4799	0.59235	0.00032801	-3.2877	-0.0018205	-2.6953	-0.0014925	553.7452777103169	47.606	0.27318	47.606	47.44	47.714	0					11	9	2	0	0	0	0.34147	1	10839	10839		11.114	1.767	1	126660	+		58414	18479	33483	33484	71413	71413					-0.06861900950275412
YIMWYKLLF	9	Unmodified	_YIMWYKLLF_					0	0	0			REV__ENST00000558461.1_1_15:49309175-49309800:-|nuORF	REV__ENST00000558461.1_1_15:49309175-49309800:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	426.2837219238281	3	426.231473	1275.67259	0.13356	5.6926E-05	-0.96021	-0.00040927	-0.82666	-0.00035235	426.23111728887415	85.809	1.9265	85.809	85.069	86.996	0					126	74	3	0	0	0	0.2615	1	22394	22394		2.4985	0.41248	1	300820	+		58415	22282	33484	33485	71414	71414					0.04577880712895421
YIMWYKLLF	9	Unmodified	_YIMWYKLLF_					0	0	0			REV__ENST00000558461.1_1_15:49309175-49309800:-|nuORF	REV__ENST00000558461.1_1_15:49309175-49309800:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.2836608886719	3	426.231473	1275.67259	0.14322	6.1046E-05	-0.77478	-0.00033023	-0.63155	-0.00026919	426.2311689038904	85.704	1.9599	85.695	85.09	87.05	-0.0090027					99	74	2	0	0	0	0.2615	1	22376	22376		2.4985	1.8008	1	264710	+		58416	22282	33484	33485	71415	71415					0.04577880712895421
YINELVLFIF	10	Unmodified	_YINELVLFIF_					0	0	0		ENSG00000232382|ENST00000642057|OR5K1	ENSG00000232382|ENST00000642057|OR5K1	ENSG00000232382|ENST00000642057|OR5K1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.9118347167969	3	424.240914	1269.70091	0.39548	0.00016778	-0.98227	-0.00041672	-0.58679	-0.00024894	424.24047015755747	36.375	0.43315	36.462	36.3	36.733	0.08625					24	14	2	0	0	0	0.31746	1	7336	7336		6.1918	0	1	217640			58417	8475	33485	33486	71416	71416					0.07684901893844653
YINIDNRPV	9	Unmodified	_YINIDNRPV_					0	0	0			REV__ENSG00000196455|ENST00000356763|PIK3R4	REV__ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7999267578125	2	552.29583	1102.57711	0.60867	0.00033617	-2.2057	-0.0012182	-1.597	-0.00088204	552.2937888825219	53.989	0.95612	53.989	53.622	54.578	0					99	34	4	0	0	0	0.155	1	12877	12877		30.225	7.0764	1	1459300	+		58418	18654	33486	33487	71417	71417					0.029922438462108403
YINIYQIF	8	Unmodified	_YINIYQIF_					0	0	0			REV__ENSG00000176142|ENST00000319172|TMEM39A	REV__ENSG00000176142|ENST00000319172|TMEM39A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2952270507812	2	537.286943	1072.55933	0.50994	0.00027398	0.58576	0.00031472	1.0957	0.00058871	537.2868285857111	64.816	2.4813	64.816	64.513	66.994	0					187	89	3	0	0	0	0.42446	1	16635	16635		14.582	2.0501	1	9794100	+		58419	17922	33487	33488	71418	71418					0.025955285913596526
YINPLQIDF	9	Unmodified	_YINPLQIDF_					0	0	0			REV__ENSG00000175931|ENST00000319380|UBE2O	REV__ENSG00000175931|ENST00000319380|UBE2O	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.26708984375	2	561.795132	1121.57571	0.30742	0.0001727	0.15556	8.7391E-05	0.46297	0.0002601	561.7949756422444	70.326	0.35629	70.326	70.183	70.54	0					14	12	2	0	0	0	0.23783	1	17806	17806		18.135	0	1	74324	+		58420	17913	33488	33489	71419	71419					0.01978609757452432
YINRGDCFF	9	Unmodified	_YINRGDCFF_					0	0	0		ENSG00000167094|ENST00000373289|TTC16	ENSG00000167094|ENST00000373289|TTC16	ENSG00000167094|ENST00000373289|TTC16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2794189453125	2	567.755484	1133.49641	0.38365	0.00021782	0.50187	0.00028494	0.88552	0.00050276	567.755645402368	65.908	0.69289	65.896	65.612	66.305	-0.011337					86	24	5	0	0	0	0.24913	1	16517	16517		12.532	0.89125	1	925260			58421	6146	33489	33490	71420	71420					-0.06499360468319537
YINTFVETI	9	Unmodified	_YINTFVETI_					0	0	0			REV__ENSG00000151834|ENST00000381620|GABRA2	REV__ENSG00000151834|ENST00000381620|GABRA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2764282226562	2	550.28714	1098.55973	0.34805	0.00019153	0.39677	0.00021833	0.74481	0.00040986	550.2875004323047	73.216	0.5232	73.269	72.948	73.471	0.053833					33	18	3	0	0	0	0.088391	1	18666	18666		39.957	10.876	1	195990	+		58422	16559	33490	33491	71421	71421					0.01438903520556778
YINVLKNIC	9	Unmodified	_YINVLKNIC_					0	0	0			REV__ENSG00000162694|ENST00000370114|EXTL2	REV__ENSG00000162694|ENST00000370114|EXTL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7969970703125	2	540.299527	1078.5845	0.64572	0.00034888	-0.9376	-0.00050658	-0.29188	-0.0001577	540.2987479224566	45.205	1.0426	45.28	44.808	45.85	0.075047					93	38	4	0	0	0	0.24311	1	10029	10029		16.942	1.0951	1	14411000	+		58423	17000	33491	33492	71422	71422					0.04835260122308682
YIPKRQEI	8	Unmodified	_YIPKRQEI_					0	0	0		L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|29|2|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|29|2|sense	L1MA1_dup2411|chrX:76191796-76193207:-|1.0132764033792812|0.4902543273978149|1.05|540.0|29|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3077392578125	2	523.803291	1045.59203	0.58139	0.00030454	3.618	0.0018951	4.1994	0.0021996	524.3070043664904	82.103	1.7909	82.103	81.797	83.588	0					121	67	3	0	0	0	0.23581	1	21422	21422		38.151	2.107	1	632400			58424	12443	33492	33493	71423	71423					0.07105735714230832
YIPKSKWE	8	Unmodified	_YIPKSKWE_					0	0	0		ENSG00000119596|ENST00000325680|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENST00000546901.1_1_14:75287765-75294094:+|nuORF	ENSG00000119596|ENST00000325680|YLPM1	ENSG00000119596|ENST00000325680|YLPM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8063354492188	2	525.784567	1049.55458	0.084483	4.442E-05	-2.4027	-0.0012633	-2.3183	-0.0012189	525.7824370618567	13.772	0.43427	13.668	13.41	13.845	-0.10466					60	15	5	0	0	0	0.32435	1	470	470		23.148	0.41214	1	109010			58425	2886	33493	33494	71424	71424					0.031786444485987886
YIPKSWSLF	9	Unmodified	_YIPKSWSLF_					0	0	0			REV__ENSG00000155657|ENST00000589042|TTN;REV__nc|ENSG00000155657|Q8WZ42-13|TTN	REV__nc|ENSG00000155657|Q8WZ42-13|TTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.2921752929688	2	570.808042	1139.60153	0.43922	0.00025071	-1.1247	-0.00064198	-0.68547	-0.00039127	570.8077013783474	79.399	0.34219	79.371	79.153	79.495	-0.028931					19	13	2	0	0	0	0.24739	1	20542	20542		13.508	4.1604	1	74221	+		58426	16705;23038	33494	33495	71425	71425					0.03731503999733832
YIPLCPLSLA	10	Unmodified	_YIPLCPLSLA_					0	0	0		nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;nc|ENSG00000137145|Q5VZ89-5|DENND4C;DENND4C|p.Y474Ffs*30|1|0.33|ENSG00000137145|chr9:19305461-19305461|A/-|frameshift_variant	nc|ENSG00000137145|Q5VZ89-3|DENND4C	nc|ENSG00000137145|Q5VZ89-3|DENND4C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3162841796875	2	545.304278	1088.594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.858	1	94.858	94.358	95.358	0								0	0	0	0.36787	1	25312	25312		7.2892	0.56607	1				58427	4030	33495	33496	71426	71426					0.05325028407833088
YIPLHLHARQ	10	Unmodified	_YIPLHLHARQ_					0	0	0		ENST00000530903.1_1_11:126073315-126075741:-|nuORF;nc|ENSG00000165526|Q96CM3-2|RPUSD4;ENSG00000165526|ENST00000298317|RPUSD4	ENST00000530903.1_1_11:126073315-126075741:-|nuORF	ENST00000530903.1_1_11:126073315-126075741:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3545532226562	2	624.354014	1246.69348	0.28205	0.0001761	0.52375	0.000327	0.80579	0.0005031	624.3542705663813	89.252	0.70926	89.251	88.78	89.489	-0.00080872					60	32	2	0	0	0	0.38233	2	23550	23550;23609		6.7232	6.7232	1	175450			58428	5973	33496	33497	71427;71428	71427					0.07999607136798659
YIPNLSPPTN	10	Unmodified	_YIPNLSPPTN_					0	0	0		ENST00000394628.2_1_10:79492006-79493143:+|nuORF	ENST00000394628.2_1_10:79492006-79493143:+|nuORF	ENST00000394628.2_1_10:79492006-79493143:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.2913818359375	2	558.290214	1114.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.445	1	91.445	90.945	91.945	0.00046539								0	0	0	0.3629	1	24273	24273		9.3831	1.473	1				58429	10074	33497	33498	71429	71429					0.01317421752082737
YIPVLQTAL	9	Unmodified	_YIPVLQTAL_					0	0	0			REV__ENST00000426627.1_1_13:88543904-88544189:-|nuORF	REV__ENST00000426627.1_1_13:88543904-88544189:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.3025817871094	2	509.302593	1016.59063	0.47053	0.00023964	-0.33533	-0.00017079	0.1352	6.8857E-05	509.3024401428986	78.796	1.8644	78.854	78.499	80.363	0.058151					148	75	4	0	0	0	0.062246	1	20371	20371		48.346	0.75146	1	4678300	+		58430	20904	33498	33499	71430	71430					0.08300101625445677
YIQFQTTVL	9	Unmodified	_YIQFQTTVL_					0	0	0		ENST00000209929.9_1_1:171154426-171178089:+|nuORF;ENSG00000094963|ENST00000209929|FMO2	ENST00000209929.9_1_1:171154426-171178089:+|nuORF	ENST00000209929.9_1_1:171154426-171178089:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2742309570312	2	556.802957	1111.59136	0.41531	0.00023125	-0.61698	-0.00034354	-0.20167	-0.00011229	556.8028301918406	56.924	0.3203	56.924	56.744	57.064	0					14	11	2	0	0	0	0.25202	1	13729	13729		10.824	0.75	1	219820			58431	1442	33499	33500	71431	71431					0.040028962745282115
YIQKLQSF	8	Unmodified	_YIQKLQSF_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000550970.1_1_12:50055747-50062331:-|nuORF	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.78466796875	2	513.784567	1025.55458	0.3683	0.00018923	-0.27499	-0.00014128	0.093313	4.7943E-05	513.7843441751651	79.302	0.82684	79.363	78.922	79.749	0.061409					70	36	3	0	0	0	0.41097	1	20544	20544		18.135	7.9516	1	382410			58432	5528	33500	33501	71432	71432					0.04282644448608153
YIQKLQSF	8	Unmodified	_YIQKLQSF_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000550970.1_1_12:50055747-50062331:-|nuORF	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	513.784567	1025.55458	0.44159	0.00022688	-0.15722	-8.0778E-05	0.28437	0.0001461	513.7844080167052	79.352	0.81695	79.352	79.08	79.897	0	-0.016585	4.2351E-05	NaN	18.135	64	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369950			58433	5528	33500	33501							0.04282644448608153
YIQKLQSFL	9	Unmodified	_YIQKLQSFL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000550970.1_1_12:50055747-50062331:-|nuORF	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.3085327148438	2	570.326599	1138.63865	0.41574	0.00023711	-0.67857	-0.00038701	-0.26283	-0.0001499	570.3260782601609	56.901	1.1543	56.98	56.437	57.591	0.078674					115	42	4	0	0	0	0.25314	1	13863	13863		15.847	0	1	1786200			58434	5528	33501	33502	71433	71433					0.07487175545520586
YIQKNCGKF	9	Unmodified	_YIQKNCGKF_					0	0	0		nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1	nc|ENSG00000185920|Q13635-3|PTCH1	nc|ENSG00000185920|Q13635-3|PTCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2772827148438	2	550.781502	1099.54845	0.3545	0.00019525	-1.2172	-0.00067038	-0.86265	-0.00047513	550.7803721160082	73.937	0.84792	73.906	73.152	74	-0.030655					40	30	2	0	0	0	0.24311	1	18779	18779		16.942	0	1	198280			58435	7568	33502	33503	71434	71434					0.0026580294545510696
YIQKNCGKF	9	Unmodified	_YIQKNCGKF_					0	0	0		nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1	nc|ENSG00000185920|Q13635-3|PTCH1	nc|ENSG00000185920|Q13635-3|PTCH1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	550.781502	1099.54845	0.358	0.00019718	2.2477	0.001238	2.6057	0.0014351	550.782456180087	73.861	0.1472	73.913	73.86	74.007	0.052361	0.003531	0.0035827	NaN	16.942	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163510			58436	7568	33502	33503							0.0026580294545510696
YIQLAFLVLW	10	Unmodified	_YIQLAFLVLW_					0	0	0			REV__ENSG00000145860|ENST00000424310|RNF145	REV__ENSG00000145860|ENST00000424310|RNF145	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3690185546875	2	633.368267	1264.72198	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.29	1	117.31	116.81	117.81	0.023476								0	0	0	0.38202	1	30409	30409		0.40072	0	1		+		58437	16311	33503	33504	71435	71435					0.10020911993365189
YIQLKLQL	8	Unmodified	_YIQLKLQL_					0	0	0		ENST00000351578.10_1_5:39119089-39119137:-|nuORF	ENST00000351578.10_1_5:39119089-39119137:-|nuORF	ENST00000351578.10_1_5:39119089-39119137:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	509.80377197265625	2	509.81841	1017.62227	0.50597	0.00025796	-2.0617	-0.0010511	-1.5557	-0.00079314	509.8174410024054	78.68	0.50302	78.739	78.39	78.893	0.058151					30	18	2	0	0	0	0.3671	1	20324	20324		23.148	3.8914	1	140670			58438	9577	33504	33505	71436	71436					0.11416094379421793
YIQLKSLLQPI	11	Unmodified	_YIQLKSLLQPI_					0	0	0		nc|ENSG00000172987|Q8WWQ2-4|HPSE2;nc|ENSG00000172987|Q8WWQ2-3|HPSE2;nc|ENSG00000172987|Q8WWQ2-2|HPSE2;ENSG00000172987|ENST00000370552|HPSE2	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.57379150390625	3	439.270984	1314.79112	0.13032	5.7247E-05	0.98156	0.00043117	1.1119	0.00048842	439.60582786680885	32.555	0.65535	32.609	32.136	32.791	0.054375					47	23	3	0	0	0	0.33202	1	6134	6134		5.0475	2.9615	1	108530			58439	6683	33505	33506	71437	71437					0.14631951222281714
YIQPFLAF	8	Unmodified	_YIQPFLAF_					0	0	0			REV__ENST00000256682.8_1_12:49330571-49330871:-|nuORF	REV__ENST00000256682.8_1_12:49330571-49330871:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2590026855469	2	499.770929	997.527304	0.7059	0.00035279	-3.4227	-0.0017106	-2.7168	-0.0013578	499.76899724722836	55.76	0.31248	55.83	55.646	55.958	0.070885					19	11	2	0	0	0	0.33995	1	13308	13308		15.768	1.1865	1	572610	+		58440	19554	33506	33507	71438	71438					0.028441609082278774
YIQPPQRE	8	Unmodified	_YIQPPQRE_					0	0	0		nc|ENSG00000087589|Q9NQ75-2|CASS4;ENST00000497244.1_1_20:54987478-55028248:+|nuORF;ENSG00000087589|ENST00000679887|CASS4	nc|ENSG00000087589|Q9NQ75-2|CASS4	nc|ENSG00000087589|Q9NQ75-2|CASS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2850341796875	2	515.769448	1029.52434	0.034315	1.7699E-05	0.29844	0.00015393	0.33276	0.00017163	515.771069048794	27.804	0.10835	27.804	27.732	27.84	0					5	3	2	0	0	0	0.34319	1	4775	4775		5.7604	0	1	45924			58441	1311	33507	33508	71439	71439					0.010762857834379247
YIQRQETI	8	Unmodified	_YIQRQETI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8193359375	2	525.782556	1049.55056	0.43268	0.0002275	1.4016	0.00073695	1.8343	0.00096445	525.7830607288895	49.573	0.48438	49.618	49.21	49.695	0.044891					23	17	2	0	0	0	0.3366	1	11341	11341		7.9102	0	1	143640			58442	5317	33508	33509	71440	71440					0.027765549549030766
YIQSRNSYL	9	Unmodified	_YIQSRNSYL_					0	0	0			REV__ENST00000472173.5_1_X:118112321-118146861:+|nuORF	REV__ENST00000472173.5_1_X:118112321-118146861:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.8435668945312	2	572.293288	1142.57202	0.2321	0.00013283	0.30365	0.00017378	0.53575	0.00030661	572.2937977801316	40.542	0.48483	40.641	40.505	40.99	0.099403					22	17	2	0	0	0	0.25526	1	8659	8659		7.9102	0	1	137240	+		58443	17897	33509	33510	71441	71441					0.006439399836381199
YIRAEPFEV	9	Unmodified	_YIRAEPFEV_					0	0	0			REV__nc|ENSG00000110906|Q9H3F6-3|KCTD10	REV__nc|ENSG00000110906|Q9H3F6-3|KCTD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.3167724609375	2	562.292756	1122.57096	0.2098	0.00011797	-3.6184	-0.0020346	-3.4086	-0.0019167	562.2882998962664	59.877	0.31591	59.866	59.652	59.968	-0.011486					19	10	2	0	0	0	0.24311	1	14540	14540		16.942	2.3606	1	341970	+		58444	14626	33510	33511	71442	71442					0.014577256147049411
YIRAEPFEV	9	Unmodified	_YIRAEPFEV_					0	0	0			REV__nc|ENSG00000110906|Q9H3F6-3|KCTD10	REV__nc|ENSG00000110906|Q9H3F6-3|KCTD10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	562.292756	1122.57096	-0.044372	-2.495E-05	-7.8764	-0.0044288	-7.9207	-0.0044538	562.2884556254494	59.907	0.3036	59.907	59.702	60.006	0	0.020545	-0.00091128	NaN	11.64	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453410	+		58445	14626	33510	33511							0.014577256147049411
YIRAVNFN	8	Unmodified	_YIRAVNFN_					0	0	0		nc|ENSG00000179603|O00222-3|GRM8;GRM8|p.K521Tfs*20|1|0.15|ENSG00000179603|chr7:126533820-126533821|-/GTGG|frameshift_variant;nc|ENSG00000179603|O00222-2|GRM8;ENSG00000179603|ENST00000339582|GRM8;ENST00000480995.5_1_7:126173822-126544173:-|nuORF	nc|ENSG00000179603|O00222-3|GRM8	nc|ENSG00000179603|O00222-3|GRM8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7738037109375	2	498.766709	995.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.966	1	78.966	78.466	79.466	0								0	0	0	0.33941	1	20456	20456		19.439	0	1				58446	7133	33511	33512	71443	71443					0.020926069916072265
YIRFTEFI	8	Unmodified	_YIRFTEFI_					0	0	0		nc|ENSG00000137822|Q9UGJ1|TUBGCP4;ENSG00000137822|ENST00000564079|TUBGCP4	nc|ENSG00000137822|Q9UGJ1|TUBGCP4	nc|ENSG00000137822|Q9UGJ1|TUBGCP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.31689453125	2	544.792392	1087.57023	0.27364	0.00014908	1.4629	0.00079699	1.7366	0.00094606	545.2952675267511	95.163	0.7454	95.163	94.745	95.491	0					114	67	2	0	0	0	0.3366	1	25390	25390		18.135	1.9859	1	108820			58447	4083	33512	33513	71444	71444					0.0299493096565584
YIRFTEFI	8	Unmodified	_YIRFTEFI_					0	0	0		nc|ENSG00000137822|Q9UGJ1|TUBGCP4;ENSG00000137822|ENST00000564079|TUBGCP4	nc|ENSG00000137822|Q9UGJ1|TUBGCP4	nc|ENSG00000137822|Q9UGJ1|TUBGCP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	544.792392	1087.57023	0.6805	0.00037073	1.257	0.00068482	1.9375	0.0010556	545.2950548835287	95.251	0.31655	95.249	95.015	95.331	-0.0020142	0.043441	-0.00013375	NaN	18.135	43	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249990			58448	4083	33512	33513							0.0299493096565584
YIRGSWKVF	9	Unmodified	_YIRGSWKVF_					0	0	0		L1MC5a_dup6065|chr6:25834759-25835527:-|3.3305081510680705|0.0722535869421422|5.53|514.0|7|1|sense	L1MC5a_dup6065|chr6:25834759-25835527:-|3.3305081510680705|0.0722535869421422|5.53|514.0|7|1|sense	L1MC5a_dup6065|chr6:25834759-25835527:-|3.3305081510680705|0.0722535869421422|5.53|514.0|7|1|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.322021484375	2	578.319109	1154.62366	0.23055	0.00013333	1.7366	0.0010043	1.9671	0.0011376	578.3201667999521	80.347	1.3488	80.347	79.953	81.302	0					117	56	3	0	0	0	0.25314	2	20855	20855;21005		15.847	4.1008	1	231400			58449	12459	33513	33514	71445;71446	71445					0.05253728468187546
YIRHTHQL	8	Unmodified	_YIRHTHQL_					0	0	0		ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	ENSG00000158411|ENST00000289359|MITD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.28173828125	2	534.290882	1066.56721	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.164	1	98.157	97.657	98.657	-0.0068283								0	0	0	0.36486	1	26293	26293		7.9102	0	1				58450	5354	33514	33515	71447	71447					0.03659100631534784
YIRIVLNPND	10	Unmodified	_YIRIVLNPND_					0	0	0			REV__ENSG00000101577|ENST00000677752|LPIN2	REV__ENSG00000101577|ENST00000677752|LPIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.837890625	2	608.837862	1215.66117	-0.013757	-8.376E-06	-0.033989	-2.0694E-05	-0.047747	-2.907E-05	608.8376537357569	105.7	0.97192	105.7	105.33	106.3	0					340	139	3	0	0	0	0.38773	2	28042	27987;28042		5.7319	2.4505	1	931180	+		58451	14278	33515	33516	71448;71449	71449					0.06196774943123273
YIRIVLNPND	10	Unmodified	_YIRIVLNPND_					0	0	0			REV__ENSG00000101577|ENST00000677752|LPIN2	REV__ENSG00000101577|ENST00000677752|LPIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.83740234375	2	608.837862	1215.66117	0.2454	0.00014941	-0.2651	-0.0001614	-0.019691	-1.1989E-05	608.8375255550451	105.8	0.92616	105.8	105.37	106.29	0.0031738					349	133	3	0	0	0	0.40262	1	28105	28105		2.9952	0.26005	1	1060400	+		58452	14278	33515	33516	71450	71450					0.06196774943123273
YIRLQRQRATL	11	Unmodified	_YIRLQRQRATL_					0	0	0		ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENST00000468834.1_1_10:33346560-33347304:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.79998779296875	3	473.284398	1416.83137	0.15482	7.3272E-05	-0.48841	-0.00023116	-0.3336	-0.00015789	473.2840703215486	21.432	0.48033	21.432	21.199	21.68	0					29	16	2	0	0	0	0.33347	1	2788	2788		0.45452	0.087843	1	52075			58453	10843	33516	33517	71451	71451					0.13962310665419864
YIRNRKRKQQR	11	Unmodified	_YIRNRKRKQQR_					0	0	0		chr1:100735634-100738123|234|60.64|0.43|7.13|+|1|None,VCAM1|2	chr1:100735634-100738123|234|60.64|0.43|7.13|+|1|None,VCAM1|2	chr1:100735634-100738123|234|60.64|0.43|7.13|+|1|None,VCAM1|2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.978271484375	3	515.97808	1544.91241	-0.062365	-3.2179E-05	1.3626	0.00070306	1.3002	0.00067088	515.9782404853024	101.48	1.1887	101.48	101.08	102.26	0					346	162	4	0	0	0	0.48212	3	27015	27015;27045;27075		0.45452	0.35968	1	411800			58454	109	33517	33518	71452;71453;71454	71452					0.16175011428163089
YIRNRKRKQQR	11	Unmodified	_YIRNRKRKQQR_					0	0	0		chr1:100735634-100738123|234|60.64|0.43|7.13|+|1|None,VCAM1|2	chr1:100735634-100738123|234|60.64|0.43|7.13|+|1|None,VCAM1|2	chr1:100735634-100738123|234|60.64|0.43|7.13|+|1|None,VCAM1|2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.9782104492188	3	515.97808	1544.91241	0.047026	2.4264E-05	1.0295	0.0005312	1.0765	0.00055546	516.3134854112086	101.29	0.85211	101.32	100.9	101.75	0.027214					252	114	3	0	0	0	0.48212	1	27039	27039		0.45452	0.35968	1	341570			58455	109	33517	33518	71455	71455					0.16175011428163089
YIRNRKRKQQR	11	Unmodified	_YIRNRKRKQQR_					0	0	0		chr1:100735634-100738123|234|60.64|0.43|7.13|+|1|None,VCAM1|2	chr1:100735634-100738123|234|60.64|0.43|7.13|+|1|None,VCAM1|2	chr1:100735634-100738123|234|60.64|0.43|7.13|+|1|None,VCAM1|2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.9780883789062	3	515.97808	1544.91241	0.17039	8.7918E-05	0.82362	0.00042497	0.99401	0.00051289	515.9781035667997	101.43	0.73615	101.42	101.17	101.91	-0.0054703					170	98	3	0	0	0	0.48173	2	27119	27082;27119		0.50596	0.41111	1	338120			58456	109	33517	33518	71456;71457	71457					0.16175011428163089
YIRQGKEAT	9	Unmodified	_YIRQGKEAT_					0	0	0		ENST00000488876.5_1_17:37814522-37819158:+|nuORF;ENST00000471896.5_1_17:37815284-37815866:+|nuORF;ENST00000481171.5_1_17:37814925-37815866:+|nuORF;nc|ENSG00000131748|Q14849-2|STARD3;nc|ENSG00000131748|Q14849-3|STARD3;ENSG00000131748|ENST00000336308|STARD3	ENST00000488876.5_1_17:37814522-37819158:+|nuORF	ENST00000488876.5_1_17:37814522-37819158:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.768798828125	2	533.288005	1064.56146	0.63029	0.00033613	-0.54892	-0.00029273	0.081378	4.3398E-05	533.2856714096345	72.945	0.10632	72.916	72.873	72.98	-0.029305					6	3	2	0	0	0	0.25431	1	18599	18599		9.3831	2.0939	1	32395			58457	11140	33518	33519	71458	71458					0.03175957329199264
YIRRFMRKL	9	Unmodified	_YIRRFMRKL_					0	0	0			REV__nc|ENSG00000289690|Q7L2J0-2|MEPCE	REV__nc|ENSG00000289690|Q7L2J0-2|MEPCE	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	641.8823852539062	2	641.881884	1281.74922	0.13383	8.5903E-05	1.1836	0.00075975	1.3175	0.00084565	641.8824397631346	96.311	0.623	96.311	95.906	96.529	0					95	59	2	0	0	0	0.35563	1	25656	25656		0.52476	0	1	111820	+		58458	16359	33519	33520	71459	71459					0.11961117052760528
YIRRTIWDF	9	Unmodified	_YIRRTIWDF_					0	0	0			REV__LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	REV__LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.7609252929688	2	635.340572	1268.66659	0.072736	4.6212E-05	-2.6025	-0.0016535	-2.5298	-0.0016073	635.3388950141351	65.324	0.51369	65.413	65.19	65.704	0.088882					34	18	3	0	0	0	0.24924	1	16300	16300		20.454	9.6297	1	168670	+		58459	13905	33520	33521	71460	71460					0.04300498525594776
YIRRTIWDF	9	Unmodified	_YIRRTIWDF_					0	0	0			REV__LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	REV__LRP2|p.N4549Kfs*8|1|0.33|ENSG00000081479|chr2:169132655-169132655|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.7608642578125	2	635.340572	1268.66659	0.5213	0.0003312	-1.763	-0.0011201	-1.2417	-0.0007889	635.339019566321	65.413	0.46637	65.401	65.227	65.694	-0.011337					29	16	3	0	0	0	0.24924	1	16335	16335		20.454	9.6297	1	177420	+		58460	13905	33520	33521	71461	71461					0.04300498525594776
YIRSARKA	8	Unmodified	_YIRSARKA_					0	0	0			REV__nc|ENSG00000148908|O43665-2|RGS10	REV__nc|ENSG00000148908|O43665-2|RGS10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2379455566406	2	482.787976	963.561398	0.063123	3.0475E-05	-0.051253	-2.4744E-05	0.01187	5.7309E-06	482.78793620924165	25.229	0.53439	25.173	24.78	25.314	-0.055931					32	18	2	0	0	0	0.34185	1	3951	3951		10.183	10.183	1	99186	+		58461	16444	33521	33522	71462	71462					0.07816002119841414
YIRSARKA	8	Unmodified	_YIRSARKA_					0	0	0			REV__nc|ENSG00000148908|O43665-2|RGS10	REV__nc|ENSG00000148908|O43665-2|RGS10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	482.787976	963.561398	0.1483	7.1597E-05	-0.25606	-0.00012362	-0.10776	-5.2027E-05	482.7877174311866	25.156	0.62234	25.156	24.762	25.384	0	-0.011319	-0.0001282	NaN	10.183	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68487	+		58462	16444	33521	33522							0.07816002119841414
YIRVEGNAL	9	Unmodified	_YIRVEGNAL_					0	0	0			REV__ENST00000527959.1_1_11:66290957-66294394:+|nuORF	REV__ENST00000527959.1_1_11:66290957-66294394:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.7850952148438	2	517.785099	1033.55564	0.32627	0.00016894	-0.053807	-2.786E-05	0.27246	0.00014108	517.7850760291761	51.473	0.4471	51.483	51.246	51.693	0.0095634					31	16	2	0	0	0	0.19839	1	12022	12022		28.487	0.85804	1	686980	+		58463	17837	33522	33523	71463	71463					0.04020858817534645
YISAAMLL	8	Unmodified	_YISAAMLL_					0	0	0			REV__ENST00000597026.5_1_19:19017767-19023834:-|nuORF	REV__ENST00000597026.5_1_19:19017767-19023834:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.24371337890625	2	441.243689	880.472826	0.40878	0.00018037	-1.1537	-0.00050907	-0.74493	-0.0003287	441.24321853574145	74.704	0.67265	74.672	74.387	75.059	-0.031487					44	23	3	0	0	0	0.20019	1	19205	19205		42.968	0	1	369280	+		58464	14477	33523	33524	71464	71464					0.027808257651599888
YISDKKEMLQ	10	Unmodified	_YISDKKEMLQ_					0	0	0		ENST00000517946.1_1_9:26869929-26887469:-|nuORF;ENST00000483493.6_1_9:26884817-26892259:-|nuORF;ENSG00000120159|ENST00000333916|CAAP1	ENST00000517946.1_1_9:26869929-26887469:-|nuORF	ENST00000517946.1_1_9:26869929-26887469:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	418.2662658691406	3	418.884801	1253.63257	0.22235	9.3139E-05	-2.3373	-0.00097904	-2.1149	-0.0008859	418.8828917999832	40.77	1.0916	40.862	40.313	41.405	0.09267					112	40	5	0	0	0	0.31597	1	8742	8742		3.0723	0	1	1019100			58465	2931	33524	33525	71465	71465					0.01590289251703325
YISEGGVATL	10	Unmodified	_YISEGGVATL_					0	0	0			REV__ENSG00000182963|ENST00000592524|GJC1	REV__ENSG00000182963|ENST00000592524|GJC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7712707519531	2	505.263665	1008.51278	0.19326	9.7646E-05	0.52164	0.00026357	0.7149	0.00036121	505.2635598611099	76.281	2.4547	76.281	75.794	78.249	0					246	90	7	0	0	0	0.30958	1	19566	19566		19.257	1.122	1	8897500	+		58466	18229	33525	33526	71466	71466					0.008860439694558409
YISEGGVATL	10	Unmodified	_YISEGGVATL_					0	0	0			REV__ENSG00000182963|ENST00000592524|GJC1	REV__ENSG00000182963|ENST00000592524|GJC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	506.7710876464844	2	505.263665	1008.51278	0.16026	8.0976E-05	0.514	0.00025971	0.67427	0.00034068	505.26360474710174	76.203	2.4655	76.257	75.756	78.221	0.053421					257	88	7	0	0	0	0.30958	1	19545	19545		19.257	1.122	1	9333800	+		58467	18229	33525	33526	71467	71467					0.008860439694558409
YISEHEHF	8	Unmodified	_YISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2369995117188	2	531.237981	1060.46141	-0.97324	-0.00051702	-0.18808	-9.9913E-05	-1.1613	-0.00061693	531.237756621295	34.821	0.71349	34.821	34.588	35.302	0					55	25	3	0	0	0	0.00085426	2	6900	6900;6943		146.01	146.01	1	768150			58468	1924	33526	33527	71468;71469	71468					-0.0664028000462622
YISEHEHF	8	Unmodified	_YISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2372436523438	2	531.237981	1060.46141	-1.2212	-0.00064876	-0.044687	-2.3739E-05	-1.2659	-0.0006725	531.2378355967811	34.738	0.73995	34.813	34.549	35.288	0.075306					61	26	3	0	0	0	0.0015052	2	6870	6870;6917		137.59	129.2	1	831970			58469	1924	33526	33527	71470;71471	71470					-0.0664028000462622
YISEHEHF	8	Unmodified	_YISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.237060546875	2	531.237981	1060.46141	-0.37012	-0.00019662	-0.59865	-0.00031803	-0.96878	-0.00051465	531.2375456166099	34.7	0.71894	34.777	34.505	35.224	0.077377					61	25	3	0	0	0	0.0072474	2	6850	6850;6897		123.1	123.1	1	643190			58470	1924	33526	33527	71472;71473	71472					-0.0664028000462622
YISEHEHF	8	Unmodified	_YISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2398071289062	2	531.237981	1060.46141	0.57534	0.00030565	2.1718	0.0011538	2.7472	0.0014594	531.2390970470822	71.463	0.73984	71.436	71.185	71.925	-0.027275					46	26	4	0	0	0	0.43727	1	18176	18176		10.183	1.5901	1	571230			58471	1924	33526	33527	71474	71474					-0.0664028000462622
YISLRANR	8	Unmodified	_YISLRANR_					0	0	0			REV__ENST00000537725.1_1_12:2070525-2113588:-|nuORF	REV__ENST00000537725.1_1_12:2070525-2113588:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.25408935546875	2	496.785433	991.556313	0.34845	0.0001731	-0.10202	-5.0684E-05	0.24642	0.00012242	496.78543575652714	28.866	0.43507	28.861	28.629	29.064	-0.0042572					24	14	2	0	0	0	0.34353	1	5069	5069		4.756	0	1	188870	+		58472	16524	33527	33528	71475	71475					0.06019698257227901
YISLSSCCFV	10	Unmodified	_YISLSSCCFV_					0	0	0		ENST00000216185.6_1_22:36863238-36863490:-|nuORF	ENST00000216185.6_1_22:36863238-36863490:-|nuORF	ENST00000216185.6_1_22:36863238-36863490:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2537841796875	2	561.253928	1120.4933	0.62178	0.00034897	-0.4185	-0.00023488	0.20328	0.00011409	561.2537337362153	74.551	0.75592	74.551	74.313	75.069	0					57	26	3	0	0	0	0.2291	1	19135	19135		32.305	0	1	1122800			58473	8815	33528	33529	71476	71476					-0.062123716373434945
YISLSSCCFV	10	Unmodified	_YISLSSCCFV_					0	0	0		ENST00000216185.6_1_22:36863238-36863490:-|nuORF	ENST00000216185.6_1_22:36863238-36863490:-|nuORF	ENST00000216185.6_1_22:36863238-36863490:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2544555664062	2	561.253928	1120.4933	0.33406	0.00018749	-0.092053	-5.1665E-05	0.24201	0.00013583	561.2539529931257	74.468	0.86288	74.52	74.268	75.131	0.052368					67	30	3	0	0	0	0.14015	2	19104	19059;19104		39.957	7.6518	1	1392100			58474	8815	33528	33529	71477;71478	71478					-0.062123716373434945
YISLSSCCFV	10	Unmodified	_YISLSSCCFV_					0	0	0		ENST00000216185.6_1_22:36863238-36863490:-|nuORF	ENST00000216185.6_1_22:36863238-36863490:-|nuORF	ENST00000216185.6_1_22:36863238-36863490:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2542724609375	2	561.253928	1120.4933	0.45435	0.00025501	-0.056244	-3.1567E-05	0.39811	0.00022344	561.2538729630654	74.624	0.88972	74.593	74.295	75.185	-0.030655					61	31	3	0	0	0	0.20278	2	19140	19089;19140		32.305	1.3787	1	1404500			58475	8815	33528	33529	71479;71480	71480					-0.062123716373434945
YISNSIYF	8	Unmodified	_YISNSIYF_					0	0	0		nc|ENSG00000169551|Q8WUE5-2|CT55;ENSG00000169551|ENST00000276241|CT55	nc|ENSG00000169551|Q8WUE5-2|CT55	nc|ENSG00000169551|Q8WUE5-2|CT55	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.8004455566406	2	503.74765	1005.48075	0.58532	0.00029485	0.32287	0.00016265	0.90819	0.0004575	503.74769447030377	64.214	0.39828	64.214	64.026	64.424	0					17	14	2	0	0	0	0.29855	1	15947	15947		32.117	0	1	182590			58476	6362	33529	33530	71481	71481					-0.021773237137153956
YISPFELW	8	Unmodified	_YISPFELW_					0	0	0			REV__ZNF512B|p.K262Qfs*82|1|0.17|ENSG00000196700|chr20:63966391-63966392|-/G|frameshift_variant	REV__ZNF512B|p.K262Qfs*82|1|0.17|ENSG00000196700|chr20:63966391-63966392|-/G|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.7654418945312	2	527.765843	1053.51713	0.39478	0.00020835	-1.0279	-0.00054251	-0.63315	-0.00033415	527.7651950663969	40.704	0.58816	40.803	40.563	41.151	0.099407					35	21	2	0	0	0	0.42446	1	8715	8715		14.582	2.9414	1	671100	+		58477	18679	33530	33531	71482	71482					-0.0074844681698778
YISPFSGNI	9	Unmodified	_YISPFSGNI_					0	0	0			REV__ENSG00000154269|ENST00000357639|ENPP3	REV__ENSG00000154269|ENST00000357639|ENPP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.2772216796875	2	499.2531	996.491647	0.40218	0.00020079	-3.7985	-0.0018964	-3.3964	-0.0016956	499.2524559940747	75.077	0.53739	75.13	74.758	75.295	0.052361					25	19	2	0	0	0	0.18943	1	19168	19168		30.225	5.5509	1	116960	+		58478	16657	33531	33532	71483	71483					-0.006739213394212129
YISRQKLGF	9	Unmodified	_YISRQKLGF_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7844848632812	2	556.316566	1110.61858	0.22192	0.00012346	0.26464	0.00014723	0.48657	0.00027069	556.3164134335958	40.901	0.46385	40.901	40.688	41.152	0					24	16	2	0	0	0	0.25066	1	8826	8826		11.64	3.047	1	173150	+		58479	18751	33532	33533	71484	71484					0.06769424605590757
YISRQKLGF	9	Unmodified	_YISRQKLGF_					0	0	0			REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	REV__nc|ENSG00000197603|Q9H799-5|CPLANE1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	556.316566	1110.61858	0.48267	0.00026852	-0.44778	-0.00024911	0.03489	1.941E-05	556.3160682875534	40.61	0.40325	40.702	40.502	40.905	0.09267	-0.099439	-0.00054659	NaN	11.64	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201400	+		58480	18751	33532	33533							0.06769424605590757
YISRRSKKLL	10	Unmodified	_YISRRSKKLL_					0	0	0			REV__ENST00000339514.8_1_2:192234998-192248009:+|nuORF	REV__ENST00000339514.8_1_2:192234998-192248009:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.59246826171875	3	421.934706	1262.78229	0.2168	9.1477E-05	1.7636	0.00074414	1.9804	0.00083561	421.9347677883001	48.326	0.65646	48.37	48.065	48.721	0.04332					45	24	3	0	0	0	0.4022	1	11041	11041		3.0723	0.81953	1	253810	+		58481	20097	33533	33534	71485	71485					0.16141022376473302
YISSFRCGF	9	Unmodified	_YISSFRCGF_					0	0	0			REV__ENSG00000251154|ENST00000509356|PTTG1IP2	REV__ENSG00000251154|ENST00000509356|PTTG1IP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.8321533203125	2	540.252577	1078.4906	0.54007	0.00029177	0.69968	0.000378	1.2397	0.00066977	540.2528177884066	69.089	0.46679	69.161	68.934	69.401	0.071938					24	16	2	0	0	0	0.2322	1	17484	17484		14.838	0.25658	1	166490	+		58482	19218	33534	33535	71486	71486					-0.04550458979974792
YISSPLRWR	9	Unmodified	_YISSPLRWR_					0	0	0		ENST00000433477.3_1_4:156846568-156846796:-|nuORF	ENST00000433477.3_1_4:156846568-156846796:-|nuORF	ENST00000433477.3_1_4:156846568-156846796:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.8054809570312	2	589.327465	1176.64038	0.40197	0.00023689	-0.84527	-0.00049814	-0.4433	-0.00026125	589.3268885817687	62.927	0.34822	63.022	62.88	63.228	0.095722					20	12	2	0	0	0	0.24913	1	15505	15505		12.532	0	1	167440			58483	10491	33535	33536	71487	71487					0.05912229354134979
YISSSFVKL	9	Unmodified	_YISSSFVKL_					0	0	0			REV__nc|ENSG00000197415|Q14D04-3|VEPH1	REV__nc|ENSG00000197415|Q14D04-3|VEPH1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2801513671875	2	522.292225	1042.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.356	1	51.403	50.903	51.903	0.046574								0	0	0	0.22377	1	11977	11977		14.838	2.3067	1		+		58484	23153	33536	33537	71488	71488					0.050315112458065414
YISSYALNLA	10	Unmodified	_YISSYALNLA_					0	0	0			REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.277099609375	2	557.792589	1113.57063	0.12535	6.9921E-05	0.62165	0.00034675	0.747	0.00041667	558.2946326123413	75.571	0.58877	75.571	75.262	75.85	0					26	20	2	0	0	0	0.29519	1	19362	19362		15.847	0	1	69704	+		58485	23233	33537	33538	71489	71489					0.01838305894852965
YISSYALNLA	10	Unmodified	_YISSYALNLA_					0	0	0			REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	REV__nc|ENSG00000273749|Q7L576-2|CYFIP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2769165039062	2	557.792589	1113.57063	0.3506	0.00019556	-0.49608	-0.00027671	-0.14548	-8.115E-05	558.2939194184943	75.413	0.56287	75.466	75.218	75.781	0.052368					29	20	2	0	0	0	0.29519	1	19380	19380		21.747	1.293	1	125780	+		58486	23233	33537	33538	71490	71490					0.01838305894852965
YISVQQAKPTL	11	Unmodified	_YISVQQAKPTL_					0	0	0			REV__ENST00000587262.1_1_18:43435450-43438580:-|nuORF	REV__ENST00000587262.1_1_18:43435450-43438580:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.8563842773438	2	624.353345	1246.69214	0.44375	0.00027706	0.25859	0.00016145	0.70235	0.00043851	624.3542877069212	89.243	0.91367	89.243	88.672	89.586	0					81	43	3	0	0	0	0.42346	1	23569	23569		8.1555	0.54658	1	211590	+		58487	22533	33538	33539	71491	71491					0.07865928257388077
YITDVPNGF	9	Unmodified	_YITDVPNGF_					0	0	0		ENSG00000102755|ENST00000282397|FLT1;nc|ENSG00000102755|P17948-2|FLT1;nc|ENSG00000102755|P17948-3|FLT1	ENSG00000102755|ENST00000282397|FLT1	ENSG00000102755|ENST00000282397|FLT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2323608398438	2	513.250557	1024.48656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.241	1	79.241	78.741	79.741	0								0	0	0	0.23091	1	20539	20539		12.532	3.1484	1				58488	1778	33539	33540	71492	71492					-0.024702252020460946
YITEPEMVF	9	Unmodified	_YITEPEMVF_					0	0	0		GRSF1|p.K348T|1|0.36|ENSG00000132463|chr4:70827944-70827944|T/G|missense_variant;nc|ENSG00000132463|Q12849-5|GRSF1;ENST00000505068.5_1_4:71691792-71705589:-|nuORF;ENSG00000132463|ENST00000254799|GRSF1	GRSF1|p.K348T|1|0.36|ENSG00000132463|chr4:70827944-70827944|T/G|missense_variant	GRSF1|p.K348T|1|0.36|ENSG00000132463|chr4:70827944-70827944|T/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3268432617188	2	564.767726	1127.5209	0.33024	0.00018651	0.47328	0.00026729	0.80352	0.0004538	565.2692843887521	65.488	2.3374	65.577	64.742	67.079	0.088882					156	85	3	0	0	0	0.24739	1	16788	16788		8.5933	8.5933	1	467670			58489	3634	33540	33541	71493	71493					-0.03776145105439355
YITEPEMVF	9	Unmodified	_YITEPEMVF_					0	0	0		GRSF1|p.K348T|1|0.36|ENSG00000132463|chr4:70827944-70827944|T/G|missense_variant;nc|ENSG00000132463|Q12849-5|GRSF1;ENST00000505068.5_1_4:71691792-71705589:-|nuORF;ENSG00000132463|ENST00000254799|GRSF1	GRSF1|p.K348T|1|0.36|ENSG00000132463|chr4:70827944-70827944|T/G|missense_variant	GRSF1|p.K348T|1|0.36|ENSG00000132463|chr4:70827944-70827944|T/G|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	564.767726	1127.5209	0.39524	0.00022322	0.42072	0.00023761	0.81595	0.00046082	565.269238422593	65.818	1.7832	65.818	64.934	66.717	0	0.16093	-0.0001515	NaN	8.5933	132	63	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	564190			58490	3634	33540	33541							-0.03776145105439355
YITETPLIY	9	Unmodified	_YITETPLIY_					0	0	0			REV__ENSG00000185681|ENST00000373764|MORN5	REV__ENSG00000185681|ENST00000373764|MORN5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7811889648438	2	556.79734	1111.58013	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.88	1	76.935	76.435	77.435	0.055214								0	0	0	0.17683	1	19810	19810		28.487	0	1		+		58491	18400	33541	33542	71494	71494					0.028800741803934216
YITETWLK	8	Unmodified	_YITETWLK_					0	0	0			REV__SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	REV__SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7744140625	2	527.2844	1052.55425	0.49562	0.00026133	0.88015	0.00046409	1.3758	0.00072542	527.2845040144772	62.681	0.37006	62.672	62.49	62.86	-0.0085526					18	13	2	0	0	0	0.33245	1	15437	15437		19.439	0.18201	1	125530	+		58492	15424	33542	33543	71495	71495					0.030072247287534992
YITIGMICIF	10	Unmodified	_YITIGMICIF_					0	0	0		ENST00000520709.5_1_8:92007907-92052988:-|nuORF;ENSG00000155099|ENST00000285419|PIP4P2	ENST00000520709.5_1_8:92007907-92052988:-|nuORF	ENST00000520709.5_1_8:92007907-92052988:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8099975585938	2	587.305964	1172.59737	0.22578	0.0001326	0.98914	0.00058093	1.2149	0.00071353	587.8091741199436	69.695	0.81484	69.695	69.369	70.183	0					117	29	6	0	0	0	0.11671	1	17597	17597		44.407	12.29	1	989900			58493	5160	33543	33544	71496	71496					0.017979551901817103
YITLKEPLL	9	Unmodified	_YITLKEPLL_					0	0	0			REV__ENSG00000136937|ENST00000375147|NCBP1	REV__ENSG00000136937|ENST00000375147|NCBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3165893554688	2	545.33135	1088.64815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.648	1	91.739	91.239	92.239	0.090668								0	0	0	0.24311	1	24336	24336		8.5933	0	1		+		58494	15838	33544	33545	71497	71497					0.10736943831057033
YITMSERIF	9	Unmodified	_YITMSERIF_					0	0	0			REV__ENSG00000148154|ENST00000374279|UGCG	REV__ENSG00000148154|ENST00000374279|UGCG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.2894897460938	2	580.294442	1158.57433	0.38688	0.00022451	-2.0065	-0.0011643	-1.6196	-0.00093983	580.2922958217613	71.637	0.72096	71.609	71.288	72.009	-0.027275					43	25	3	0	0	0	0.10197	2	18152	18152;18206		37.974	9.4795	1	587240	+		58495	16415	33545	33546	71498;71499	71498					0.0013865239704955457
YITPLEERCHL	11	Unmodified	_YITPLEERCHL_					0	0	0			REV__ENST00000564004.5_1_16:89799827-89804651:+|nuORF	REV__ENST00000564004.5_1_16:89799827-89804651:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.5784606933594	3	458.567583	1372.68092	-0.094012	-4.3111E-05	0.26315	0.00012067	0.16914	7.7561E-05	458.5677079674492	35.339	0.65842	35.414	35.234	35.893	0.075306					30	23	2	0	0	0	0.44443	1	7122	7122		5.4027	0.35519	1	220350	+		58496	22335	33546	33547	71500	71500					0.009487828915780483
YITPLEERCHL	11	Unmodified	_YITPLEERCHL_					0	0	0			REV__ENST00000564004.5_1_16:89799827-89804651:+|nuORF	REV__ENST00000564004.5_1_16:89799827-89804651:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	458.567583	1372.68092	-0.26771	-0.00012276	0.34	0.00015592	0.072293	3.3151E-05	458.56771672939686	35.418	0.29605	35.418	35.251	35.547	0	-0.010961	-5.5552E-05	NaN	5.4027	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203540	+		58497	22335	33546	33547							0.009487828915780483
YITPLEERCHL	11	Unmodified	_YITPLEERCHL_					0	0	0			REV__ENST00000564004.5_1_16:89799827-89804651:+|nuORF	REV__ENST00000564004.5_1_16:89799827-89804651:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	458.567583	1372.68092	-0.48276	-0.00022138	0.53671	0.00024612	0.053951	2.474E-05	458.90217540858276	35.378	0.30053	35.455	35.195	35.495	0.077377	0.025922	0.00021506	NaN	5.4027	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194050	+		58498	22335	33546	33547							0.009487828915780483
YITQNRKVR	9	Unmodified	_YITQNRKVR_					0	0	0			REV__ENST00000525284.5_1_15:101565016-101602660:+|nuORF	REV__ENST00000525284.5_1_15:101565016-101602660:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3438110351562	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.89	1	112.9	112.4	113.4	0.014824								0	0	0	0.2672	1	29372	29372		0.52476	0	1		+		58499	16652	33547	33548	71501	71501					0.09147016757128767
YITRVIEGL	9	Unmodified	_YITRVIEGL_					0	0	0			REV__ENST00000587860.1_1_18:46287547-46385927:+|nuORF	REV__ENST00000587860.1_1_18:46287547-46385927:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3115234375	2	532.310949	1062.60735	0.69534	0.00037014	-1.519	-0.00080858	-0.82367	-0.00043845	532.8109311675807	66.15	1.2255	66.15	65.768	66.994	0					96	43	3	0	0	0	0.088443	1	16698	16698		39.95	3.8227	1	1876400	+		58500	15651	33548	33549	71502	71502					0.0785460251142922
YITSTRPSF	9	Unmodified	_YITSTRPSF_					0	0	0			REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	REV__nc|ENSG00000110723|Q8NEV8-2|EXPH5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.2802124023438	2	536.277106	1070.53966	0.20997	0.0001126	1.914	0.0010265	2.124	0.0011391	536.2786318216785	75.805	2.1366	75.805	74.847	76.983	0					247	77	5	0	0	0	0.17787	1	19647	19647		26.884	0	1	45459000	+		58501	14682	33549	33550	71503	71503					0.007211525806042118
YITVFISIL	9	Unmodified	_YITVFISIL_					0	0	0			REV__ENSG00000268104|ENST00000598581|SLC6A14	REV__ENSG00000268104|ENST00000598581|SLC6A14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7719116210938	2	534.820618	1067.62668	0.64141	0.00034304	-3.7193	-0.0019891	-3.0778	-0.0016461	534.8173852762706	64.597	0.85782	64.597	64.13	64.988	0					43	31	2	0	0	0	0.24913	1	16109	16109		12.532	3.1841	1	128040	+		58502	19305	33550	33551	71504	71504					0.09557558802339372
YITYWKEYI	9	Unmodified	_YITYWKEYI_					0	0	0		ENST00000480590.1_1_1:227921003-227922761:-|nuORF;nc|ENSG00000081692|Q9H9V9-2|JMJD4;ENSG00000081692|ENST00000620518|JMJD4;nc|ENSG00000081692|Q9H9V9-1|JMJD4	ENST00000480590.1_1_1:227921003-227922761:-|nuORF	ENST00000480590.1_1_1:227921003-227922761:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	427.2419128417969	3	426.885018	1277.63323	-0.016339	-6.9747E-06	-2.7274	-0.0011643	-2.7437	-0.0011713	426.8839059494772	30.426	0.41891	30.426	30.282	30.701	0					21	14	2	0	0	0	0.2524	1	5552	5552		7.609	1.4171	1	98729			58503	1185	33551	33552	71505	71505					0.0055145196306511934
YIVADHTLF	9	Unmodified	_YIVADHTLF_					0	0	0		nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7822875976562	2	539.782025	1077.5495	0.73394	0.00039617	0.80753	0.00043589	1.5415	0.00083206	539.7825124190986	54.304	0.6288	54.304	53.834	54.462	0					49	21	3	0	0	0	0.072844	1	12895	12895		44.407	2.3125	1	1344200			58504	4865	33552	33553	71506	71506					0.013823405859739069
YIVATLPQF	9	Unmodified	_YIVATLPQF_					0	0	0			REV__nc|ENSG00000181378|Q6ZU64-4|CFAP65	REV__nc|ENSG00000181378|Q6ZU64-4|CFAP65	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.294921875	2	526.294768	1050.57498	0.49224	0.00025906	-0.19882	-0.00010464	0.29342	0.00015443	526.2945660421909	81.712	0.706	81.712	81.375	82.081	0					59	28	3	0	0	0	0.25314	1	21316	21316		15.847	0	1	272730	+		58505	18144	33553	33554	71507	71507					0.05171815108406008
YIVATMLYTG	10	Unmodified	_YIVATMLYTG_					0	0	0		ENSG00000105641|ENST00000222248|SLC5A5	ENSG00000105641|ENST00000222248|SLC5A5	ENSG00000105641|ENST00000222248|SLC5A5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.3118896484375	2	566.291368	1130.56818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.198	1	48.241	47.741	48.741	0.04332								0	0	0	0.33661	1	11000	11000		20.454	4.3045	1				58506	2001	33554	33555	71508	71508					0.00812134165516909
YIVAVAGNI	9	Unmodified	_YIVAVAGNI_					0	0	0		nc|ENSG00000176748|P0C646|OR52Z1P	nc|ENSG00000176748|P0C646|OR52Z1P	nc|ENSG00000176748|P0C646|OR52Z1P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	460.8182678222656	2	460.26601	918.517468	0.085921	3.9546E-05	-1.4755	-0.00067914	-1.3896	-0.0006396	460.2651027603592	69.016	0.3324	69.016	68.841	69.174	0					14	11	2	0	0	0	0.24913	1	17446	17446		7.9102	0	1	68949			58507	12854	33555	33556	71509	71509					0.054949729028635375
YIVEALLGV	9	Unmodified	_YIVEALLGV_					0	0	0		nc|ENSG00000106003|Q8NES3-4|LFNG;nc|ENSG00000106003|Q8NES3-2|LFNG;nc|ENSG00000106003|Q8NES3-3|LFNG;ENSG00000106003|ENST00000222725|LFNG	nc|ENSG00000106003|Q8NES3-4|LFNG	nc|ENSG00000106003|Q8NES3-4|LFNG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2973937988281	2	488.789318	975.564084	0.53111	0.0002596	-2.0754	-0.0010144	-1.5443	-0.00075482	488.788404648832	78.888	0.56039	78.888	78.669	79.23	0					46	23	3	0	0	0	0.23783	1	20498	20498		18.135	0	1	150090			58508	12638	33556	33557	71510	71510					0.075324127341446
YIVESKKSFL	10	Unmodified	_YIVESKKSFL_					0	0	0		ENSG00000094755|ENST00000265294|GABRP	ENSG00000094755|ENST00000265294|GABRP	ENSG00000094755|ENST00000265294|GABRP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.783447265625	2	607.344989	1212.67542	0.73022	0.0004435	-0.42807	-0.00025999	0.30215	0.00018351	607.344651643433	54.489	0.63626	54.552	54.327	54.963	0.063202					48	23	3	0	0	0	0.318	1	12948	12948		7.2892	7.2892	1	408860			58509	1439	33557	33558	71511	71511					0.07759427371433958
YIVESKKSFL	10	Unmodified	_YIVESKKSFL_					0	0	0		ENSG00000094755|ENST00000265294|GABRP	ENSG00000094755|ENST00000265294|GABRP	ENSG00000094755|ENST00000265294|GABRP	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	607.344989	1212.67542	0.6822	0.00041433	-0.52688	-0.00032	0.15532	9.4333E-05	607.3445117032837	54.838	0.55341	54.822	54.631	55.184	-0.015923	0.17791	2.7361E-05	NaN	7.2892	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	572040			58510	1439	33557	33558							0.07759427371433958
YIVESSAILF	10	Unmodified	_YIVESSAILF_					0	0	0		ENSG00000164116|ENST00000506455|GUCY1A1;nc|ENSG00000164116|Q02108-2|GUCY1A1	ENSG00000164116|ENST00000506455|GUCY1A1	ENSG00000164116|ENST00000506455|GUCY1A1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2927856445312	2	571.310615	1140.60668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.507	1	84.507	84.007	85.007	0								0	0	0	0.35216	1	22154	22154		13.906	4.5586	1				58511	5793	33558	33559	71512	71512					0.041997630717105494
YIVFHLCFY	9	Unmodified	_YIVFHLCFY_					0	0	0			REV__chr10:89462624-89506310|321|10.73|0.6|4.16|-|0|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|63	REV__chr10:89462624-89506310|321|10.73|0.6|4.16|-|0|TE_info:L1PA7,L1PA7_dup9423,L1,LINE,donor,+,89506310,89511743|SLC16A12,None|63	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3028564453125	2	602.79662	1203.57869	0.61801	0.00037253	4.4006	0.0026526	5.0186	0.0030252	602.7970912046233	63.339	1.466	63.434	62.495	63.961	0.095722					111	52	3	0	0	0	0.21902	1	15660	15660		20.871	1.6142	1	886140	+		58512	13163	33559	33560	71513	71513					-0.014958383893599603
YIVHKTYGF	9	Unmodified	_YIVHKTYGF_					0	0	0		ENST00000565532.5_1_16:66762088-66770076:-|nuORF;nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	ENST00000565532.5_1_16:66762088-66770076:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3268432617188	2	564.297842	1126.58113	0.37596	0.00021215	0.24331	0.0001373	0.61927	0.00034945	564.298083055033	67.311	1.0131	67.389	66.82	67.834	0.078041					86	35	3	0	0	0	0.23783	1	16788	16788		12.532	0.89125	1	318680			58513	3898	33560	33561	71514	71514					0.02290333339942663
YIVIRQLDF	9	Unmodified	_YIVIRQLDF_					0	0	0			REV__COL22A1|p.K1223Rfs*86|1|0.3|ENSG00000169436|chr8:138626235-138626239|TTCTT/-|frameshift_variant	REV__COL22A1|p.K1223Rfs*86|1|0.3|ENSG00000169436|chr8:138626235-138626239|TTCTT/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.31396484375	2	583.832049	1165.64954	0.23941	0.00013977	-1.3262	-0.00077428	-1.0868	-0.00063451	583.8322401538632	72.881	0.73772	72.935	72.681	73.419	0.053841					73	26	3	0	0	0	0.26879	1	18730	18730		13.508	0	1	352100	+		58514	13239	33561	33562	71515	71515					0.07334577919777985
YIVLCFMLSL	10	Unmodified	_YIVLCFMLSL_					0	0	0			REV__ENST00000453348.1_1_7:1778478-1778763:-|nuORF	REV__ENST00000453348.1_1_7:1778478-1778763:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.8264770507812	2	601.321614	1200.62867	0.47595	0.0002862	3.6613	0.0022016	4.1373	0.0024878	601.8265106750516	89.697	0.54736	89.696	89.387	89.935	-0.00081635					57	44	2	0	0	0	0.35558	1	23758	23758		11.64	4.9171	1	94714	+		58515	21140	33562	33563	71516	71516					0.03638528224291804
YIVLLCFTKF	10	Unmodified	_YIVLLCFTKF_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-3|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	416.2470703125	3	416.234994	1245.68315	0.21844	9.0923E-05	-0.62437	-0.00025988	-0.40593	-0.00016896	416.2347334302711	44.712	0.83037	44.712	44.436	45.266	0					52	29	3	0	0	0	0.32122	1	9870	9870		2.086	0.17963	1	370060			58516	4671	33563	33564	71517	71517					0.07013863367319573
YIVLLCFTKF	10	Unmodified	_YIVLLCFTKF_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-3|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	416.234994	1245.68315	0.2731	0.00011368	-0.94523	-0.00039344	-0.67213	-0.00027976	416.2344860720976	44.363	0.73554	44.438	44.2	44.935	0.075047	-0.11265	-0.0001453	NaN	2.086	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	381980			58517	4671	33563	33564							0.07013863367319573
YIVLRIQF	8	Unmodified	_YIVLRIQF_					0	0	0			REV__ENST00000494371.5_1_1:230807261-230814859:+|nuORF	REV__ENST00000494371.5_1_1:230807261-230814859:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.855224609375	2	526.318577	1050.6226	0.53147	0.00027972	-0.11494	-6.0494E-05	0.41653	0.00021923	526.318308701283	70.238	0.30409	70.238	70.074	70.378	0					15	10	2	0	0	0	0.30749	1	17827	17827		20.871	10.688	1	113730	+		58518	21650	33564	33565	71518	71518					0.09931514099253036
YIVLRIQF	8	Unmodified	_YIVLRIQF_					0	0	0			REV__ENST00000494371.5_1_1:230807261-230814859:+|nuORF	REV__ENST00000494371.5_1_1:230807261-230814859:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.8552856445312	2	526.318577	1050.6226	0.45812	0.00024111	0.25286	0.00013309	0.71098	0.0003742	526.3186909726928	70.192	0.33803	70.259	70.101	70.439	0.06604					17	11	2	0	0	0	0.30749	1	17808	17808		20.871	10.688	1	108990	+		58519	21650	33564	33565	71519	71519					0.09931514099253036
YIVLRIQF	8	Unmodified	_YIVLRIQF_					0	0	0			REV__ENST00000494371.5_1_1:230807261-230814859:+|nuORF	REV__ENST00000494371.5_1_1:230807261-230814859:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.8553466796875	2	526.318577	1050.6226	0.53585	0.00028203	-0.046919	-2.4694E-05	0.48893	0.00025733	526.8199683155864	70.305	0.32874	70.281	70.079	70.408	-0.024078					22	11	3	0	0	0	0.33995	1	17824	17824		15.768	0	1	136050	+		58520	21650	33564	33565	71520	71520					0.09931514099253036
YIVPMLTV	8	Unmodified	_YIVPMLTV_					0	0	0		ENST00000487654.5_1_1:46034675-46035625:+|nuORF;ENST00000475985.1_1_1:46034769-46035625:+|nuORF;ENST00000473038.5_1_1:46033610-46035625:+|nuORF;ENSG00000117448|ENST00000351829|AKR1A1	ENST00000487654.5_1_1:46034675-46035625:+|nuORF	ENST00000487654.5_1_1:46034675-46035625:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	468.2672424316406	2	468.267164	934.519776	-0.042895	-2.0086E-05	0.37968	0.00017779	0.33678	0.0001577	468.26717606062215	76.748	1.0557	76.802	76.289	77.344	0.053413					88	37	3	0	0	0	0.42446	1	19805	19805		14.582	0	1	1111300			58521	2794	33565	33566	71521	71521					0.04989685316309078
YIVPNLLPTV	10	Unmodified	_YIVPNLLPTV_					0	0	0			REV__ENSG00000197591|ENST00000355784|OR11L1	REV__ENSG00000197591|ENST00000355784|OR11L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.2839965820312	2	564.8368	1127.65905	0.13356	7.5437E-05	-0.68322	-0.00038591	-0.54967	-0.00031047	565.3391411945574	51.8	0.21937	51.802	51.686	51.905	0.0023499					12	7	2	0	0	0	0.31165	1	12072	12072		15.847	5.0233	1	355790	+		58522	18749	33566	33567	71522	71522					0.10032346205321119
YIVQKLYGF	9	Unmodified	_YIVQKLYGF_					0	0	0		ENST00000481915.5_1_3:32574447-32611850:-|nuORF;ENSG00000144635|ENST00000273130|DYNC1LI1	ENST00000481915.5_1_3:32574447-32611850:-|nuORF	ENST00000481915.5_1_3:32574447-32611850:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	565.8157958984375	2	565.815867	1129.61718	0.49065	0.00027762	-0.34973	-0.00019788	0.14092	7.9736E-05	565.8156498403963	84.775	0.99007	84.775	84.376	85.366	0					84	36	3	0	0	0	0.2616	1	22234	22234		14.582	2.0501	1	1345500			58523	4599	33567	33568	71523	71523					0.05755790516809611
YIVQKLYGF	9	Unmodified	_YIVQKLYGF_					0	0	0		ENST00000481915.5_1_3:32574447-32611850:-|nuORF;ENSG00000144635|ENST00000273130|DYNC1LI1	ENST00000481915.5_1_3:32574447-32611850:-|nuORF	ENST00000481915.5_1_3:32574447-32611850:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	565.815867	1129.61718	0.61209	0.00034633	-0.44803	-0.0002535	0.16407	9.2831E-05	565.8156032337895	84.647	1.5169	84.727	84.394	85.911	0.080879	-0.02325	-0.00010756	NaN	14.582	122	58	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1468000			58524	4599	33567	33568							0.05755790516809611
YIVQKLYGF	9	Unmodified	_YIVQKLYGF_					0	0	0		ENST00000481915.5_1_3:32574447-32611850:-|nuORF;ENSG00000144635|ENST00000273130|DYNC1LI1	ENST00000481915.5_1_3:32574447-32611850:-|nuORF	ENST00000481915.5_1_3:32574447-32611850:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	565.815867	1129.61718	0.47533	0.00026895	-0.28213	-0.00015963	0.1932	0.00010932	565.8156863614412	84.762	1.5488	84.749	84.385	85.934	-0.01284	-0.0013448	8.0178E-05	NaN	14.582	118	60	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1574500			58525	4599	33567	33568							0.05755790516809611
YIVRAGLSF	9	Unmodified	_YIVRAGLSF_					0	0	0			REV__nc|ENSG00000162542|Q5TGY1-2|TMCO4	REV__nc|ENSG00000162542|Q5TGY1-2|TMCO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7817993164062	2	513.292559	1024.57057	0.058041	2.9792E-05	0.8039	0.00041264	0.86195	0.00044243	513.7945673033519	75.711	0.14771	75.711	75.592	75.739	0					5	4	2	0	0	0	0.24311	1	19445	19445		16.942	2.3606	1	26044	+		58526	16988	33568	33569	71524	71524					0.05926350685513171
YIVSHFHK	8	Unmodified	_YIVSHFHK_					0	0	0			REV__nc|ENSG00000166435|Q6P2D8-2|XRRA1	REV__nc|ENSG00000166435|Q6P2D8-2|XRRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.7898559570312	2	515.777077	1029.5396	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.204	1	64.297	63.797	64.797	0.09288								0	0	0	0.35985	1	15939	15939		10.183	0.80027	1		+		58527	17320	33569	33570	71525	71525					0.026011973712684267
YIVSHFHK	8	Unmodified	_YIVSHFHK_					0	0	0			REV__nc|ENSG00000166435|Q6P2D8-2|XRRA1	REV__nc|ENSG00000166435|Q6P2D8-2|XRRA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.7894897460938	2	515.777077	1029.5396	0.44269	0.00022833	-2.9169	-0.0015045	-2.4742	-0.0012761	515.7755192874063	64.06	0.48773	64.05	63.851	64.339	-0.0095291					29	17	2	0	0	0	0.43727	1	15947	15947		10.183	1.5901	1	403270	+		58528	17320	33569	33570	71526	71526					0.026011973712684267
YIVTSLIQK	9	Unmodified	_YIVTSLIQK_					0	0	0			REV__nc|ENSG00000105695|P20916-2|MAG	REV__nc|ENSG00000105695|P20916-2|MAG	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.8396606445312	2	532.82115	1063.62775	0.38555	0.00020543	0.14347	7.6442E-05	0.52902	0.00028187	532.8210699115701	42.968	0.13198	43.053	42.975	43.107	0.085197					6	4	2	0	0	0	0.155	1	9405	9405		30.225	9.7712	1	113280	+		58529	14480	33570	33571	71527	71527					0.09847773171213703
YIVVPRVPLR	10	Unmodified	_YIVVPRVPLR_					0	0	0		ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.3704223632812	2	606.384783	1210.75501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.906	1	80.879	80.379	81.379	-0.026825								0	0	0	0.3808	1	21033	21033		1.8442	0	1				58530	5145	33571	33572	71528	71528					0.15806538836068285
YIVYFHEY	8	Unmodified	_YIVYFHEY_					0	0	0			REV__ENST00000477110.6_1_X:302544-308028:-|nuORF	REV__ENST00000477110.6_1_X:302544-308028:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.280029296875	2	567.26875	1132.52295	0.27825	0.00015784	-2.487	-0.0014108	-2.2087	-0.001253	567.2673404378837	52.973	0.40445	52.963	52.761	53.166	-0.0096054					23	14	2	0	0	0	0.33995	1	12517	12517		5.7604	0.52976	1	154880	+		58531	17382	33572	33573	71529	71529					-0.03801348305319152
YIWCLDYKGG	10	Unmodified	_YIWCLDYKGG_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	609.2669677734375	2	609.286617	1216.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.333	1	70.394	69.894	70.894	0.061272								0	0	0	0.37044	1	17813	17813		6.2058	0.97511	1				58532	7892	33573	33574	71530	71530					-0.040936341199994786
YIWCLDYKGG	10	Unmodified	_YIWCLDYKGG_					0	0	0		nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	nc|ENSG00000196663|O15040-2|TECPR2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.266845703125	2	609.286617	1216.55868	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.362	1	70.337	69.837	70.837	-0.024872								0	0	0	0.37044	1	17815	17815		6.2058	0.9089	1				58533	7892	33573	33574	71531	71531					-0.040936341199994786
YIWEIETGTL	10	Unmodified	_YIWEIETGTL_					0	0	0		ENSG00000166415|ENST00000360509|WDR72;WDR72|p.D837Mfs*7|1|0.32|ENSG00000166415|chr15:53615697-53615698|-/TTCAT|frameshift_variant	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	613.2363891601562	2	612.810979	1223.6074	0.21495	0.00013172	0.87503	0.00053623	1.09	0.00066795	612.810778540134	69.938	0.67366	69.938	69.732	70.406	0					58	24	4	0	0	0	0.31473	1	17735	17735		10.824	0	1	222490			58534	6076	33574	33575	71532	71532					0.004545577207863971
YIWGDISL	8	Unmodified	_YIWGDISL_					0	0	0			REV__ENST00000504778.5_1_5:54552318-54579000:-|nuORF	REV__ENST00000504778.5_1_5:54552318-54579000:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.3023986816406	2	483.750193	965.485833	0.30649	0.00014827	0.20343	9.8409E-05	0.50992	0.00024668	483.7502950002573	70.322	0.50207	70.297	69.935	70.437	-0.024872					32	17	2	0	0	0	0.31934	1	17698	17698		24.674	0	1	217510	+		58535	13689	33575	33576	71533	71533					0.0017098014890279956
YIWHNEWN	8	Unmodified	_YIWHNEWN_					0	0	0			REV__nc|ENSG00000171885|P55087-2|AQP4	REV__nc|ENSG00000171885|P55087-2|AQP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.2885131835938	2	581.259248	1160.50394	0.22039	0.00012811	-0.074054	-4.3044E-05	0.14634	8.5061E-05	581.2591488956983	43.103	0.73715	43.187	42.92	43.657	0.083992					63	26	4	0	0	0	0.34337	1	9349	9349		5.2307	0.47466	1	996660	+		58536	17676	33576	33577	71534	71534					-0.06988884876386692
YIWVRWYSHWW	11	Unmodified	_YIWVRWYSHWW_					0	0	0			REV__ENST00000295992.7_1_3:142606565-142606607:-|nuORF	REV__ENST00000295992.7_1_3:142606565-142606607:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.8768310546875	4	421.207027	1680.799	0.29863	0.00012578	0.23559	9.9233E-05	0.53422	0.00022502	421.2072107871242	48.2	0.19898	48.244	48.145	48.344	0.043324					12	7	3	0	0	0	0.33351	1	10987	10987		0.094841	0.094841	1	219250	+		58537	19785	33577	33578	71535	71535					-0.01416476737585981
YIYDGELVSK	10	Unmodified	_YIYDGELVSK_					0	0	0		nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;ENSG00000117620|ENST00000533028|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	593.8030395507812	2	593.803154	1185.59175	0.21643	0.00012852	-0.17536	-0.00010413	0.041068	2.4386E-05	593.8029842648186	46.237	0.58858	46.237	46.003	46.592	0					50	21	3	0	0	0	0.015119	1	10398	10398		77.049	40.542	1	1525100			58538	13000	33578	33579	71536	71536					0.006382712036838711
YIYDGELVSK	10	Unmodified	_YIYDGELVSK_					0	0	0		nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;ENSG00000117620|ENST00000533028|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7825927734375	2	593.803154	1185.59175	0.42056	0.00024973	-0.17484	-0.00010382	0.24572	0.00014591	593.8031076266725	46.099	0.57764	46.164	45.925	46.503	0.065048					50	20	3	0	0	0	0.31119	1	10293	10293		18.373	10.218	1	1599800			58539	13000	33578	33579	71537	71537					0.006382712036838711
YIYDGELVSK	10	Unmodified	_YIYDGELVSK_					0	0	0		nc|ENSG00000283761|Q9Y2D2-2|SLC35A3;ENSG00000117620|ENST00000533028|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	nc|ENSG00000283761|Q9Y2D2-2|SLC35A3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	593.803154	1185.59175	0.1876	0.00011139	0.22112	0.0001313	0.40872	0.0002427	593.8032126302694	46.098	0.49512	46.158	45.9	46.396	0.059837	-0.028316	0.00032135	NaN	77.049	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1669700			58540	13000	33578	33579							0.006382712036838711
YIYIISLRLSL	11	Unmodified	_YIYIISLRLSL_					0	0	0		ENST00000258796.11_1_7:2704096-2704171:+|nuORF	ENST00000258796.11_1_7:2704096-2704171:+|nuORF	ENST00000258796.11_1_7:2704096-2704171:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.5543518066406	3	451.942868	1352.80677	0.16265	7.3506E-05	0.04898	2.2136E-05	0.21163	9.5643E-05	451.9431249177136	49.44	1.3917	49.485	48.768	50.16	0.044891					107	51	3	0	0	0	0.3299	1	11186	11186		4.1166	0	1	520970			58541	8949	33579	33580	71538	71538					0.14448237739316028
YIYIISLRLSL	11	Unmodified	_YIYIISLRLSL_					0	0	0		ENST00000258796.11_1_7:2704096-2704171:+|nuORF	ENST00000258796.11_1_7:2704096-2704171:+|nuORF	ENST00000258796.11_1_7:2704096-2704171:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.5543518066406	3	451.942868	1352.80677	0.51258	0.00023166	0.88532	0.00040011	1.3979	0.00063177	451.94305364334053	48.512	0.80715	48.56	48.101	48.908	0.04752					45	29	2	0	0	0	0.3299	1	11186	11186		4.1166	0	1	399360			58542	8949	33579	33580	71539	71539					0.14448237739316028
YIYIISLRLSL	11	Unmodified	_YIYIISLRLSL_					0	0	0		ENST00000258796.11_1_7:2704096-2704171:+|nuORF	ENST00000258796.11_1_7:2704096-2704171:+|nuORF	ENST00000258796.11_1_7:2704096-2704171:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.5542907714844	3	451.942868	1352.80677	0.40468	0.00018289	0.62913	0.00028433	1.0338	0.00046722	451.9428833196689	48.344	0.54763	48.388	48.095	48.643	0.04332					33	20	2	0	0	0	0.33146	1	11091	11091		4.1166	0	1	329740			58543	8949	33579	33580	71540	71540					0.14448237739316028
YIYIRLLG	8	Unmodified	_YIYIRLLG_					0	0	0		ENSG00000107779|ENST00000372037|BMPR1A	ENSG00000107779|ENST00000372037|BMPR1A	ENSG00000107779|ENST00000372037|BMPR1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.792724609375	2	505.805303	1009.59605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.197	1	53.197	52.697	53.697	0								0	0	0	0.35014	1	12545	12545		14.582	1.0738	1				58544	2146	33580	33581	71541	71541					0.0916382520794059
YIYIRLLG	8	Unmodified	_YIYIRLLG_					0	0	0		ENSG00000107779|ENST00000372037|BMPR1A	ENSG00000107779|ENST00000372037|BMPR1A	ENSG00000107779|ENST00000372037|BMPR1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7928161621094	2	505.805303	1009.59605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.19	1	53.247	52.747	53.747	0.056255								0	0	0	0.33625	1	12540	12540		20.871	2.7362	1				58545	2146	33580	33581	71542	71542					0.0916382520794059
YIYKCFLNF	9	Unmodified	_YIYKCFLNF_					0	0	0			REV__nc|ENSG00000138496|Q8IXQ6-3|PARP9	REV__nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.49700927734375	3	404.203694	1209.58925	0.11498	4.6474E-05	2.514	0.0010162	2.629	0.0010626	404.53916646686963	36.046	0.1353	36.132	36.034	36.17	0.086246					6	4	2	0	0	0	0.25612	1	7269	7269		8.1555	3.2585	1	54797	+		58546	15931	33581	33582	71543	71543					-0.007158557349384864
YIYVHFTDW	9	Unmodified	_YIYVHFTDW_					0	0	0			REV__ENST00000342756.9_1_4:57368535-57368814:+|nuORF	REV__ENST00000342756.9_1_4:57368535-57368814:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.8660278320312	2	622.292756	1242.57096	0.16255	0.00010116	0.5024	0.00031264	0.66495	0.0004138	622.7945951122759	74.141	1.0043	74.111	73.237	74.241	-0.030663					56	36	2	0	0	0	0.23783	1	18947	18947		18.135	4.2289	1	584790	+		58547	20127	33582	33583	71544	71544					-0.04062274385296405
YIYYPMLV	8	Unmodified	_YIYYPMLV_					0	0	0		ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	ENSG00000164187|ENST00000296603|LMBRD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2720947265625	2	531.272447	1060.53034	0.36179	0.00019221	-0.93685	-0.00049772	-0.57506	-0.00030552	531.2718779841762	67.428	0.60367	67.411	67.181	67.785	-0.016296					38	20	2	0	0	0	0.43455	1	16958	16958		11.114	0.29054	1	447130			58548	5808	33583	33584	71545	71545					0.0024966797070646862
YKAEPLETF	9	Unmodified	_YKAEPLETF_					0	0	0		ENSG00000137767|ENST00000260324|SQOR	ENSG00000137767|ENST00000260324|SQOR	ENSG00000137767|ENST00000260324|SQOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2794799804688	2	549.279315	1096.54408	0.14875	8.1707E-05	-0.15049	-8.2659E-05	-0.0017337	-9.5226E-07	549.2791972979626	73.716	0.5616	73.716	73.468	74.029	0					33	19	2	0	0	0	0.063853	1	18845	18845		47.749	5.6541	1	544000			58549	4074	33584	33585	71546	71546					-0.00033382996502950846
YKAEPLETF	9	Unmodified	_YKAEPLETF_					0	0	0		ENSG00000137767|ENST00000260324|SQOR	ENSG00000137767|ENST00000260324|SQOR	ENSG00000137767|ENST00000260324|SQOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2792358398438	2	549.279315	1096.54408	0.3842	0.00021103	-0.25647	-0.00014087	0.12774	7.0163E-05	549.2790614642377	73.697	0.45541	73.749	73.494	73.95	0.052361					29	15	2	0	0	0	0.051692	1	18836	18836		52.268	6.2474	1	586750			58550	4074	33584	33585	71547	71547					-0.00033382996502950846
YKAEPLETF	9	Unmodified	_YKAEPLETF_					0	0	0		ENSG00000137767|ENST00000260324|SQOR	ENSG00000137767|ENST00000260324|SQOR	ENSG00000137767|ENST00000260324|SQOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.296875	2	549.279315	1096.54408	0.36923	0.00020281	0.04658	2.5585E-05	0.4158	0.00022839	549.2793817542922	73.822	0.43926	73.791	73.528	73.967	-0.030663					30	15	2	0	0	0	0.088443	1	18910	18910		39.95	3.9055	1	579510			58551	4074	33584	33585	71548	71548					-0.00033382996502950846
YKATGDPYY	9	Unmodified	_YKATGDPYY_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.247314453125	2	539.248015	1076.48148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.25	1	101.28	100.78	101.78	0.027206								0	0	0	0.25858	1	27009	27009		3.5965	0.60125	1				58552	2724	33585	33586	71549	71549					-0.053705290646803405
YKAYVDLS	8	Unmodified	_YKAYVDLS_					0	0	0			REV__nc|ENSG00000184634|Q93074-3|MED12	REV__nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.7474365234375	2	479.74765	957.480748	0.41368	0.00019846	-0.13433	-6.4444E-05	0.27935	0.00013402	479.7473701860882	91.168	1.2292	91.168	90.728	91.957	0.00047302					190	85	3	0	0	0	0.46022	1	24177	24177		2.3027	0	1	8986100	+		58553	18327	33586	33587	71550	71550					0.0003067628628059538
YKDKEFCVL	9	Unmodified	_YKDKEFCVL_					0	0	0			REV__CON__P06868	REV__CON__P06868	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.7869262695312	2	572.788992	1143.56343	0.41209	0.00023604	-3.5599	-0.0020391	-3.1479	-0.0018031	572.7862088094647	86.73	0.47879	86.73	86.546	87.025	0					26	14	2	0	0	0	0.25314	1	22835	22835		15.847	2.8047	1	232370	+	+	58554	13253	33587	33588	71551	71551					-0.0026074997722389526
YKDRLLAI	8	Unmodified	_YKDRLLAI_					0	0	0		TATDN3|p.F189Sfs*8|1|0.18|ENSG00000203705|chr1:212807812-212807812|C/-|frameshift_variant;nc|ENSG00000203705|Q17R31-5|TATDN3;nc|ENSG00000203705|Q17R31-2|TATDN3;ENSG00000203705|ENST00000366974|TATDN3;nc|ENSG00000203705|Q17R31-3|TATDN3	TATDN3|p.F189Sfs*8|1|0.18|ENSG00000203705|chr1:212807812-212807812|C/-|frameshift_variant	TATDN3|p.F189Sfs*8|1|0.18|ENSG00000203705|chr1:212807812-212807812|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.30059814453125	2	496.300384	990.586216	0.4013	0.00019917	-0.011744	-5.8288E-06	0.38956	0.00019334	496.30030442444985	66.867	0.59216	66.867	66.6	67.193	0					64	20	4	0	0	0	0.22	1	16797	16797		39.957	0	1	1261900			58555	8182	33588	33589	71552	71552					0.0905463720255284
YKDRLLAI	8	Unmodified	_YKDRLLAI_					0	0	0		TATDN3|p.F189Sfs*8|1|0.18|ENSG00000203705|chr1:212807812-212807812|C/-|frameshift_variant;nc|ENSG00000203705|Q17R31-5|TATDN3;nc|ENSG00000203705|Q17R31-2|TATDN3;ENSG00000203705|ENST00000366974|TATDN3;nc|ENSG00000203705|Q17R31-3|TATDN3	TATDN3|p.F189Sfs*8|1|0.18|ENSG00000203705|chr1:212807812-212807812|C/-|frameshift_variant	TATDN3|p.F189Sfs*8|1|0.18|ENSG00000203705|chr1:212807812-212807812|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.30059814453125	2	496.300384	990.586216	0.17952	8.9094E-05	0.2772	0.00013757	0.45672	0.00022667	496.3003939970368	66.906	0.64143	66.892	66.572	67.213	-0.013588					61	22	4	0	0	0	0.31518	1	16795	16795		29.082	2.8134	1	1330700			58556	8182	33588	33589	71553	71553					0.0905463720255284
YKEITKLV	8	Unmodified	_YKEITKLV_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7742614746094	2	497.302593	992.590633	0.1481	7.365E-05	-3.8756	-0.0019274	-3.7275	-0.0018537	497.30066941024046	29.588	0.14288	29.602	29.481	29.623	0.013474					5	4	2	0	0	0	0.34247	1	5276	5276		8.5933	0	1	48194	+		58557	13783	33589	33590	71554	71554					0.0940410162546641
YKEPGPNFQI	10	Unmodified	_YKEPGPNFQI_					0	0	0			REV__nc|ENSG00000113552|P46926-2|GNPDA1	REV__nc|ENSG00000113552|P46926-2|GNPDA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.8050537109375	2	596.803488	1191.59242	0.56332	0.00033619	1.2641	0.0007544	1.8274	0.0010906	596.8042225523965	74.187	1.5163	74.187	73.527	75.043	0					98	52	2	0	0	0	0.19885	2	19055	19055;19114		32.786	16.939	1	852560	+		58558	14812	33590	33591	71555;71556	71555					0.004291106434266112
YKEPGPNFQI	10	Unmodified	_YKEPGPNFQI_					0	0	0			REV__nc|ENSG00000113552|P46926-2|GNPDA1	REV__nc|ENSG00000113552|P46926-2|GNPDA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	596.8052978515625	2	596.803488	1191.59242	0.42873	0.00025587	1.4598	0.00087121	1.8885	0.0011271	596.8043477462851	74.146	1.4718	74.198	73.604	75.076	0.052361					75	51	2	0	0	0	0.25219	3	19037	18989;19037;19090		26.268	3.3743	1	655760	+		58559	14812	33590	33591	71557;71558;71559	71558					0.004291106434266112
YKEPGPNFQI	10	Unmodified	_YKEPGPNFQI_					0	0	0			REV__nc|ENSG00000113552|P46926-2|GNPDA1	REV__nc|ENSG00000113552|P46926-2|GNPDA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.8048095703125	2	596.803488	1191.59242	0.46892	0.00027985	1.3732	0.00081952	1.8421	0.0010994	596.8044667526127	74.304	1.4763	74.273	73.584	75.06	-0.030655					119	52	3	0	0	0	0.22916	1	19001	19001		29.082	4.0906	1	742600	+		58560	14812	33590	33591	71560	71560					0.004291106434266112
YKEPNKTFP	9	Unmodified	_YKEPNKTFP_					0	0	0			REV__ENST00000465252.5_1_17:74079731-74080394:-|nuORF	REV__ENST00000465252.5_1_17:74079731-74080394:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.8265380859375	2	562.292756	1122.57096	0.43807	0.00024632	-0.3855	-0.00021676	0.052576	2.9563E-05	562.2926303561559	53.521	0.39027	53.521	53.358	53.749	0					19	14	2	0	0	0	0.23784	1	12654	12654		19.257	4.4187	1	354200	+		58561	18200	33591	33592	71561	71561					0.014577256146822037
YKEPNKTFP	9	Unmodified	_YKEPNKTFP_					0	0	0			REV__ENST00000465252.5_1_17:74079731-74080394:-|nuORF	REV__ENST00000465252.5_1_17:74079731-74080394:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8267822265625	2	562.292756	1122.57096	0.29373	0.00016516	-0.50526	-0.0002841	-0.21153	-0.00011894	562.2925343630651	53.469	0.38916	53.525	53.325	53.714	0.056259					21	14	2	0	0	0	0.23784	1	12609	12609		19.257	2.3147	1	295230	+		58562	18200	33591	33592	71562	71562					0.014577256146822037
YKEPNKTFP	9	Unmodified	_YKEPNKTFP_					0	0	0			REV__ENST00000465252.5_1_17:74079731-74080394:-|nuORF	REV__ENST00000465252.5_1_17:74079731-74080394:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	562.292756	1122.57096	0.3631	0.00020417	-0.36047	-0.00020269	0.002628	1.4777E-06	562.2925978254491	53.738	0.47681	53.728	53.531	54.008	-0.0096054	0.13688	4.4198E-05	NaN	19.257	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366010	+		58563	18200	33591	33592							0.014577256146822037
YKERAKQHAEK	11	Unmodified	_YKERAKQHAEK_					0	0	0			REV__ENSG00000085760|ENST00000263629|MTIF2	REV__ENSG00000085760|ENST00000263629|MTIF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	462.77227783203125	3	463.252875	1386.7368	-0.15663	-7.2559E-05	-1.8267	-0.00084624	-1.9834	-0.0009188	463.5863084490132	16.127	0.40191	16.127	15.947	16.349	0					36	13	4	0	0	0	0.33303	1	1186	1186		2.4348	2.4348	1	86806	+		58564	13967	33592	33593	71563	71563					0.05889752123403014
YKERLNRCVTM	11	Unmodified	_YKERLNRCVTM_					0	0	0		ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000581286.1_1_17:60637418-60637496:+|nuORF;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8-3|TLK2	ENSG00000146872|ENST00000346027|TLK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.26251220703125	3	471.576085	1411.70642	0.17164	8.0942E-05	2.4249	0.0011435	2.5965	0.0012244	471.577321962013	38.676	0.13731	38.767	38.647	38.784	0.090881					5	4	2	0	0	0	0.33146	1	8056	8056		6.6235	4.1887	1	74311			58565	4735;12746	33593	33594	71564	71564					0.017039341423469523
YKEYIFRPG	9	Unmodified	_YKEYIFRPG_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8087768554688	2	586.808574	1171.60259	0.21113	0.0001239	0.65944	0.00038696	0.87057	0.00051086	586.808963994419	41.521	0.52038	41.521	41.01	41.531	0					34	18	2	0	0	0	0.14076	1	8943	8943		32.305	1.0371	1	1329700			58566	8416	33594	33595	71565	71565					0.023657183686509597
YKEYIFRPG	9	Unmodified	_YKEYIFRPG_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.79443359375	2	586.808574	1171.60259	0.25487	0.00014956	-0.13203	-7.7478E-05	0.12283	7.2079E-05	586.8082166737614	42.771	2.0214	42.856	41.906	43.927	0.085197					138	73	3	0	0	0	0.25314	1	9347	9347		15.847	1.9411	1	741010			58567	8416	33594	33595	71566	71566					0.023657183686509597
YKFDFPVSY	9	Unmodified	_YKFDFPVSY_					0	0	0		nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.2564697265625	2	583.281857	1164.54916	0.22828	0.00013315	1.6467	0.00096051	1.875	0.0010937	583.2823744976149	67	0.64447	67.084	66.795	67.44	0.083832					36	22	2	0	0	0	0.21026	1	16826	16826		28.495	6.7479	1	435250			58568	12719	33595	33596	71567	71567					-0.026530791338473136
YKFDFPVSY	9	Unmodified	_YKFDFPVSY_					0	0	0		nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	583.281857	1164.54916	0.26961	0.00015726	1.6496	0.00096218	1.9192	0.0011194	583.7845086302286	67.134	0.62273	67.134	66.856	67.479	0	0.017328	-0.00010286	NaN	28.495	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329380			58569	12719	33595	33596							-0.026530791338473136
YKFDFPVSY	9	Unmodified	_YKFDFPVSY_					0	0	0		nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF	nc|ENSG00000136699|Q9NXE4-4|SMPD4	nc|ENSG00000136699|Q9NXE4-4|SMPD4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	583.281857	1164.54916	0.13638	7.9545E-05	1.947	0.0011357	2.0834	0.0012152	583.7847209645465	67.149	0.71964	67.133	66.814	67.534	-0.016296	0.01596	0.00024408	NaN	28.495	36	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437900			58570	12719	33595	33596							-0.026530791338473136
YKFKNRRV	8	Unmodified	_YKFKNRRV_					0	0	0			REV__ENSG00000162779|ENST00000367618|AXDND1	REV__ENSG00000162779|ENST00000367618|AXDND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.829833984375	2	555.830175	1109.6458	0.17195	9.5574E-05	-0.9754	-0.00054216	-0.80345	-0.00044658	555.8293736592407	16.234	0.4267	16.234	16.035	16.461	0					32	14	3	0	0	0	0.46491	1	1320	1320		0.69038	0	1	75336	+		58571	17010	33596	33597	71568	71568					0.0953595293658509
YKFKNRRV	8	Unmodified	_YKFKNRRV_					0	0	0			REV__ENSG00000162779|ENST00000367618|AXDND1	REV__ENSG00000162779|ENST00000367618|AXDND1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	555.830175	1109.6458	0.17195	9.5574E-05	-0.9754	-0.00054216	-0.80345	-0.00044658	555.8293736592407	16.234	0.4267	16.234	16.035	16.461	0	-0.009555	-1.4694E-06	NaN	0.69038	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75336	+		58572	17010	33596	33597							0.0953595293658509
YKFKNRRV	8	Unmodified	_YKFKNRRV_					0	0	0			REV__ENSG00000162779|ENST00000367618|AXDND1	REV__ENSG00000162779|ENST00000367618|AXDND1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	555.830175	1109.6458	0.11457	6.3681E-05	-0.87596	-0.00048689	-0.76139	-0.0004232	555.829461459952	16.385	0.45681	16.271	16.075	16.532	-0.11434	0.027062	0.00010907	NaN	0.69038	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68956	+		58573	17010	33596	33597							0.0953595293658509
YKFKNRRV	8	Unmodified	_YKFKNRRV_					0	0	0			REV__ENSG00000162779|ENST00000367618|AXDND1	REV__ENSG00000162779|ENST00000367618|AXDND1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	555.830175	1109.6458	0.15546	8.6408E-05	-1.0272	-0.00057095	-0.87174	-0.00048454	555.829443384126	16.289	0.43868	16.226	15.975	16.414	-0.062532	-0.017507	-5.9054E-05	NaN	0.69038	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76100	+		58574	17010	33596	33597							0.0953595293658509
YKFLWITLIA	10	Unmodified	_YKFLWITLIA_					0	0	0			REV__ENST00000554295.1_1_12:98850353-98850914:-|nuORF	REV__ENST00000554295.1_1_12:98850353-98850914:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3775634765625	2	634.376092	1266.73763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.39	1	115.41	114.91	115.91	0.018738								0	0	0	0.38202	1	29975	29975		0.40072	0	1		+		58575	22231	33597	33598	71569	71569					0.11493198510424918
YKFRKLTL	8	Unmodified	_YKFRKLTL_					0	0	0		ENST00000583108.5_1_17:65734947-65735019:+|nuORF	ENST00000583108.5_1_17:65734947-65735019:+|nuORF	ENST00000583108.5_1_17:65734947-65735019:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.319580078125	2	534.831852	1067.64915	0.22694	0.00012137	-0.3084	-0.00016494	-0.081461	-4.3568E-05	534.8315596606449	27.02	0.64983	26.998	26.592	27.242	-0.021412					41	22	2	0	0	0	0.33245	1	4442	4442		19.439	4.8573	1	279530			58576	12090	33598	33599	71570	71570					0.11803202990608952
YKFVPLLPG	9	Unmodified	_YKFVPLLPG_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.3197021484375	2	517.307678	1032.6008	0.45252	0.00023409	-0.10494	-5.4285E-05	0.34758	0.0001798	517.3077897191179	45.892	0.55273	45.957	45.647	46.2	0.065048					26	19	2	0	0	0	0.24581	1	10323	10323		16.942	2.5369	1	182810			58577	8602	33599	33600	71571	71571					0.08580709350690086
YKGEIYHEL	9	Unmodified	_YKGEIYHEL_					0	0	0			REV__ENSG00000103319|ENST00000263026|EEF2K	REV__ENSG00000103319|ENST00000263026|EEF2K	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2940673828125	2	576.290214	1150.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.012	1	91.012	90.512	91.512	0.00046539								0	0	0	0.24715	1	24138	24138		7.2892	0	1		+		58578	14364	33600	33601	71572	71572					-0.0033857824791994062
YKGIPYSQRPK	11	Unmodified	_YKGIPYSQRPK_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3;ENST00000493546.1_1_X:153697446-153699024:+|nuORF;ENST00000491066.1_1_X:153697015-153697611:+|nuORF	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	445.6358947753906	3	446.250583	1335.72992	-0.73769	-0.00032919	-1.0194	-0.00045489	-1.7571	-0.00078409	446.25016770036126	35.101	0.38371	35.101	34.971	35.354	0					19	13	2	0	0	0	0.33296	1	7010	7010		2.6312	2.0044	1	129240			58579	3524	33601	33602	71573	71573					0.07548439242827953
YKGIPYSQRPK	11	Unmodified	_YKGIPYSQRPK_					0	0	0		ENSG00000130827|ENST00000369682|PLXNA3;ENST00000493546.1_1_X:153697446-153699024:+|nuORF;ENST00000491066.1_1_X:153697015-153697611:+|nuORF	ENSG00000130827|ENST00000369682|PLXNA3	ENSG00000130827|ENST00000369682|PLXNA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	445.63592529296875	3	446.250583	1335.72992	-0.76955	-0.00034341	-0.71907	-0.00032089	-1.4886	-0.0006643	446.2503264661339	34.971	0.38834	35.048	34.947	35.336	0.077377					21	13	2	0	0	0	0.33296	1	6947	6947		2.6312	0.88896	1	140110			58580	3524	33601	33602	71574	71574					0.07548439242827953
YKGNSPFSPPV	11	Unmodified	_YKGNSPFSPPV_					0	0	0			REV__ENSG00000179930|ENST00000339948|ZNF648	REV__ENSG00000179930|ENST00000339948|ZNF648	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.7921142578125	2	596.803488	1191.59242	0.46892	0.00027985	1.3732	0.00081952	1.8421	0.0010994	596.8044667526127	74.304	1.4763	74.273	73.584	75.06	-0.030655					119	52	3	0	0	0	0.39802	1	19117	19117		11.495	0.67078	1	742600	+		58581	18095	33602	33603	71575	71575					0.004291106434266112
YKGPEAAQCIL	11	Unmodified	_YKGPEAAQCIL_					0	0	0			REV__ENSG00000036448|ENST00000262113|MYOM2	REV__ENSG00000036448|ENST00000262113|MYOM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.8043823242188	2	596.805174	1191.59579	0.56332	0.00033619	-1.56	-0.00093101	-0.99667	-0.00059482	596.8042225523965	74.187	1.5163	74.187	73.527	75.043	0					98	52	2	0	0	0	0.33189	1	19007	19007		19.362	2.249	1	852560	+		58582	13508	33603	33604	71576	71576					0.0076603742575116485
YKHFPLLLF	9	Unmodified	_YKHFPLLLF_					0	0	0			REV__ENST00000367688.3_1_1:174933997-174934066:+|nuORF	REV__ENST00000367688.3_1_1:174933997-174934066:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3423461914062	2	589.342052	1176.66955	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.53	1	118.55	118.05	119.05	0.026253								0	0	0	0.26704	1	30690	30690		0.6015	0	1		+		58583	20321	33604	33605	71577	71577					0.08828373650408139
YKHMRFLI	8	Unmodified	_YKHMRFLI_					0	0	0		nc|ENSG00000184489|O75365-3|PTP4A3;nc|ENSG00000184489|O75365-2|PTP4A3;ENSG00000184489|ENST00000521578|PTP4A3	nc|ENSG00000184489|O75365-3|PTP4A3	nc|ENSG00000184489|O75365-3|PTP4A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8287963867188	2	554.310229	1106.60591	0.38249	0.00021202	3.406	0.001888	3.7885	0.0021	554.3114047352706	90.083	0.60534	90.173	89.976	90.581	0.090668					90	47	3	0	0	0	0.34218	1	23894	23894		9.3474	0	1	174770			58584	7456	33605	33606	71578	71578					0.05686689941694567
YKHVVQSVEK	10	Unmodified	_YKHVVQSVEK_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.8367309570312	2	608.837862	1215.66117	0.18709	0.00011391	-0.29072	-0.000177	-0.10364	-6.3098E-05	608.8375189610648	105.7	1.0637	105.7	105.22	106.28	-0.0027847					373	153	3	0	0	0	0.39935	1	27909	27909		3.5965	0	1	963300			58585	8331	33606	33607	71579	71579					0.06196774943123273
YKIKGNQK	8	Unmodified	_YKIKGNQK_					0	0	0			REV__nc|ENSG00000057657|O75626-3|PRDM1	REV__nc|ENSG00000057657|O75626-3|PRDM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.31842041015625	2	489.790184	977.565815	0.3567	0.00017471	-0.0083474	-4.0885E-06	0.34835	0.00017062	489.7900088110682	20.385	0.50723	20.385	20.235	20.742	0					26	17	2	0	0	0	0.344	1	2584	2584		2.5775	0	1	83418	+		58586	13601	33607	33608	71580	71580					0.07613466542750302
YKIQSRFQ	8	Unmodified	_YKIQSRFQ_					0	0	0			REV__ENST00000531844.5_1_1:207818578-207857361:+|nuORF	REV__ENST00000531844.5_1_1:207818578-207857361:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	535.7778930664062	2	535.293091	1068.57163	0.36115	0.00019332	-0.2267	-0.00012135	0.13445	7.197E-05	535.2927520293166	38.322	0.42814	38.322	38.118	38.546	0					21	14	2	0	0	0	0.34092	1	8008	8008		13.508	0.97634	1	280610	+		58587	18760	33608	33609	71581	71581					0.04008565054414248
YKKAPIFTSEH	11	Unmodified	_YKKAPIFTSEH_					0	0	0		ENSG00000071051|ENST00000233154|NCK2	ENSG00000071051|ENST00000233154|NCK2	ENSG00000071051|ENST00000233154|NCK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	440.9021301269531	3	440.903072	1319.68739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	15.859	1	15.749	15.249	16.249	-0.10981								0	0	0	0.37548	1	1155	1155		2.6312	1.4164	1				58588	948	33609	33610	71582	71582					0.040330441145897566
YKKDQLAKI	9	Unmodified	_YKKDQLAKI_					0	0	0			REV__ENSG00000198677|ENST00000358746|SKIC3	REV__ENSG00000198677|ENST00000358746|SKIC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.83056640625	2	553.832049	1105.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.23	1	115.23	114.73	115.73	0								0	0	0	0.264	1	29867	29867		1.8442	0.19162	1		+		58589	18842	33610	33611	71583	71583					0.10094577919812764
YKKDQLAKI	9	Unmodified	_YKKDQLAKI_					0	0	0			REV__ENSG00000198677|ENST00000358746|SKIC3	REV__ENSG00000198677|ENST00000358746|SKIC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8299560546875	2	553.832049	1105.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.85	1	116.83	116.33	117.33	-0.022781								0	0	0	0.264	1	30261	30261		1.8442	0.36234	1		+		58590	18842	33610	33611	71584	71584					0.10094577919812764
YKKDQLAKI	9	Unmodified	_YKKDQLAKI_					0	0	0			REV__ENSG00000198677|ENST00000358746|SKIC3	REV__ENSG00000198677|ENST00000358746|SKIC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.83056640625	2	553.832049	1105.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.28	1	115.3	114.8	115.8	0.018738								0	0	0	0.264	1	29950	29950		1.8442	0.36234	1		+		58591	18842	33610	33611	71585	71585					0.10094577919812764
YKKDQLAKI	9	Unmodified	_YKKDQLAKI_					0	0	0			REV__ENSG00000198677|ENST00000358746|SKIC3	REV__ENSG00000198677|ENST00000358746|SKIC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8311767578125	2	553.832049	1105.64954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.2	1	116.22	115.72	116.72	0.020988								0	0	0	0.264	1	30154	30154		1.8442	0.36234	1		+		58592	18842	33610	33611	71586	71586					0.10094577919812764
YKKFDSKWS	9	Unmodified	_YKKFDSKWS_					0	0	0			REV__nc|ENSG00000155090|Q13118-3|KLF10	REV__nc|ENSG00000155090|Q13118-3|KLF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8063354492188	2	594.806031	1187.59751	0.50037	0.00029762	-0.65424	-0.00038914	-0.15387	-9.152E-05	594.805670454351	33.424	0.6626	33.424	33.202	33.865	0					51	23	4	0	0	0	0.18803	1	6473	6473		25.399	4.9457	1	305800	+		58593	16690	33611	33612	71587	71587					0.011214145060421288
YKKFDSKWS	9	Unmodified	_YKKFDSKWS_					0	0	0			REV__nc|ENSG00000155090|Q13118-3|KLF10	REV__nc|ENSG00000155090|Q13118-3|KLF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.805908203125	2	594.806031	1187.59751	0.59144	0.00035179	-0.43891	-0.00026107	0.15252	9.0723E-05	594.8057076662456	33.336	0.74159	33.403	33.044	33.786	0.06636					53	26	3	0	0	0	0.051692	1	6444	6444		52.268	14.294	1	413160	+		58594	16690	33611	33612	71588	71588					0.011214145060421288
YKKFDSKWS	9	Unmodified	_YKKFDSKWS_					0	0	0			REV__nc|ENSG00000155090|Q13118-3|KLF10	REV__nc|ENSG00000155090|Q13118-3|KLF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.8071899414062	2	594.806031	1187.59751	0.26034	0.00015485	-0.041393	-2.4621E-05	0.21895	0.00013023	594.8060907145152	33.302	0.57949	33.368	33.132	33.711	0.0667					46	20	3	0	0	0	0.11461	1	6430	6430		36.127	5.4905	1	381430	+		58595	16690	33611	33612	71589	71589					0.011214145060421288
YKKKFLCK	8	Unmodified	_YKKKFLCK_					0	0	0		Harlequin-int_dup274|chr7:135172831-135173811:+|1.6690129096142616|0.3270592348791503|2.35|542.0|36|3|sense	Harlequin-int_dup274|chr7:135172831-135173811:+|1.6690129096142616|0.3270592348791503|2.35|542.0|36|3|sense	Harlequin-int_dup274|chr7:135172831-135173811:+|1.6690129096142616|0.3270592348791503|2.35|542.0|36|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8143920898438	2	529.31498	1056.61541	0.43693	0.00023127	-0.0086883	-4.5988E-06	0.42824	0.00022668	529.3149645492052	114.99	0.050766	115.01	114.97	115.02	0.018738					7	5	2	0	0	0	0.344	1	29893	29893		2.5775	0.51773	1	15734			58596	12369	33612	33613	71590	71590					0.08936458227208277
YKKKSPLHYF	10	Unmodified	_YKKKSPLHYF_					0	0	0			REV__PBRM1|p.L448Wfs*5|1|0.32|ENSG00000163939|chr3:52628994-52628994|A/-|frameshift_variant	REV__PBRM1|p.L448Wfs*5|1|0.32|ENSG00000163939|chr3:52628994-52628994|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.5640869140625	3	437.580041	1309.71829	0.15681	6.8616E-05	-0.89414	-0.00039126	-0.73733	-0.00032264	437.5795264688111	47.508	0.82701	47.556	47.009	47.836	0.047523					53	30	2	0	0	0	0.38745	1	10733	10733		5.7834	0.26014	1	730290	+		58597	17106	33613	33614	71591	71591					0.07582242219496038
YKKMKKTDVF	10	Unmodified	_YKKMKKTDVF_					0	0	0			REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF	REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.3603515625	2	644.360116	1286.70568	0.49541	0.00031922	0.44423	0.00028624	0.93964	0.00060547	644.3603440032442	87.403	2.6057	87.491	86.783	89.389	0.087097					308	124	3	0	0	0	0.38515	3	23033	22987;23033;23079		6.2058	0.47393	1	776620	+		58598	20707	33614	33615	71592;71593;71594	71593					0.07379462764947675
YKKMKKTDVF	10	Unmodified	_YKKMKKTDVF_					0	0	0			REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF	REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	644.3604125976562	2	644.360116	1286.70568	0.60967	0.00039285	0.2881	0.00018564	0.89778	0.00057849	644.3602594440655	85.699	1.5366	85.69	85.04	86.577	-0.0090103					127	58	3	0	0	0	0.40106	1	22495	22495		3.2813	0.28607	1	276470	+		58599	20707	33614	33615	71595	71595					0.07379462764947675
YKKMKKTDVF	10	Unmodified	_YKKMKKTDVF_					0	0	0			REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF	REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	644.3603515625	2	644.360116	1286.70568	0.52284	0.0003369	0.50087	0.00032274	1.0237	0.00065964	644.36035809998	87.457	2.7609	87.451	86.557	89.318	-0.0056229					235	127	4	0	0	0	0.38515	2	23280	23280;23325		6.2058	0.9089	1	900490	+		58600	20707	33614	33615	71596;71597	71596					0.07379462764947675
YKKMKKTDVF	10	Unmodified	_YKKMKKTDVF_					0	0	0			REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF	REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	644.360116	1286.70568	0.57628	0.00037133	0.34251	0.0002207	0.91878	0.00059203	644.3601280945454	87.68	1.9284	87.68	86.703	88.632	0	0.13903	-0.00011315	NaN	6.2058	172	91	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	500160	+		58601	20707	33614	33615							0.07379462764947675
YKKMKKTDVF	10	Unmodified	_YKKMKKTDVF_					0	0	0			REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF	REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	644.360116	1286.70568	0.52284	0.0003369	0.50087	0.00032274	1.0237	0.00065964	644.36035809998	87.457	2.7609	87.451	86.557	89.318	-0.0056229	-0.089054	9.0934E-05	NaN	6.2058	235	127	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	900490	+		58602	20707	33614	33615							0.07379462764947675
YKKPQMEF	8	Unmodified	_YKKPQMEF_					0	0	0			REV__nc|ENSG00000135624|Q99832-2|CCT7	REV__nc|ENSG00000135624|Q99832-2|CCT7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2926635742188	2	535.770603	1069.52665	0.51251	0.00027459	0.24748	0.00013259	0.75998	0.00040718	535.7705715059045	46.732	0.59718	46.785	46.358	46.955	0.052574					70	21	4	0	0	0	0.43043	1	10491	10491		12.532	0	1	5811700	+		58603	15751	33615	33616	71598	71598					-0.005330018031372674
YKKSCHLK	8	Unmodified	_YKKSCHLK_					0	0	0		nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236;ZNF236|p.A950Hfs*33|1|0.2|ENSG00000130856|chr18:76912291-76912291|G/-|frameshift_variant;nc|ENSG00000130856|Q9UL36-2|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.29791259765625	2	503.778762	1005.54297	0.054956	2.7686E-05	0.3545	0.00017859	0.40946	0.00020628	503.7789395687088	15.354	2.9257	15.29	13.776	16.701	-0.064414					234	101	5	0	0	0	0.44389	1	1381	1381		7.9102	3.1541	1	2144000			58604	3526	33616	33617	71599	71599					0.04042124153625082
YKKSSIAR	8	Unmodified	_YKKSSIAR_					0	0	0			REV__nc|ENSG00000080854|Q9UPX0|IGSF9B	REV__nc|ENSG00000080854|Q9UPX0|IGSF9B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.2480773925781	2	476.782359	951.550165	0.077873	3.7128E-05	0.24948	0.00011895	0.32735	0.00015607	476.782372065126	19.943	0.81058	19.943	19.325	20.136	0					51	29	2	0	0	0	0.34414	1	2242	2242		2.0598	0	1	196950	+		58605	13897	33617	33618	71600	71600					0.07245180025711306
YKKTLFVEF	9	Unmodified	_YKKTLFVEF_					0	0	0		ENSG00000185010|ENST00000360256|F8;F8|p.T74K|1|0.1|ENSG00000185010|chrX:154999523-154999523|G/T|missense_variant	ENSG00000185010|ENST00000360256|F8	ENSG00000185010|ENST00000360256|F8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3086547851562	2	587.828975	1173.6434	0.58657	0.00034481	-1.1715	-0.00068863	-0.5849	-0.00034382	587.8284696325555	45.506	0.48808	45.506	45.206	45.694	0					37	17	3	0	0	0	0.13898	1	10213	10213		43.858	16.975	1	178750			58606	7496	33618	33619	71601	71601					0.06352059688288136
YKKWWLYK	8	Unmodified	_YKKWWLYK_					0	0	0			REV__ENSG00000164181|ENST00000508821|ELOVL7	REV__ENSG00000164181|ENST00000508821|ELOVL7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	406.2364196777344	3	405.56221	1213.6648	-0.17915	-7.2657E-05	1.4461	0.00058648	1.2669	0.00051383	405.56329627748426	22.149	0.17766	22.149	22.045	22.222	0					7	5	2	0	0	0	0.34117	1	3027	3027		13.906	5.1606	1	30888	+		58607	17135	33619	33620	71602	71602					0.0665148950765797
YKKWYGYC	8	Unmodified	_YKKWYGYC_					0	0	0			REV__PRPF39|p.H311Qfs*28|1|0.25|ENSG00000185246|chr14:45108443-45108464|ATAGAATCATTGAGATTCATCA/-|frameshift_variant	REV__PRPF39|p.H311Qfs*28|1|0.25|ENSG00000185246|chr14:45108443-45108464|ATAGAATCATTGAGATTCATCA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.829833984375	2	555.757495	1109.50044	0.18234	0.00010134	-0.22789	-0.00012665	-0.045546	-2.5312E-05	555.7575013071954	16.299	0.39858	16.299	16.123	16.521	0					18	13	2	0	0	0	0.34437	1	1320	1320		0.69038	0	1	27966	+		58608	18366	33620	33621	71603	71603					-0.04993270974614461
YKLCLGKLLKV	11	Unmodified	_YKLCLGKLLKV_					0	0	0			REV__nc|ENSG00000085831|Q5SRH9-2|TTC39A	REV__nc|ENSG00000085831|Q5SRH9-2|TTC39A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	639.4050903320312	2	639.404327	1276.7941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.31	1	100.35	99.848	100.85	0.038994								0	0	0	0.38126	1	26807	26807		1.1933	0	1		+		58609	13969	33621	33622	71604	71604					0.16677503075425193
YKLDELDSLE	10	Unmodified	_YKLDELDSLE_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	612.802001953125	2	612.803351	1223.59215	0.30243	0.00018533	-1.6559	-0.0010148	-1.3535	-0.00082942	612.8019504723447	76.324	0.45969	76.292	76.049	76.509	-0.031487					30	16	2	0	0	0	0.34325	1	19629	19629		13.906	0.86358	1	244810	+		58610	15602	33622	33623	71605	71605					-0.010703538670668422
YKLDELDSLE	10	Unmodified	_YKLDELDSLE_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	612.803351	1223.59215	0.11294	6.9209E-05	-1.3528	-0.000829	-1.2399	-0.00075979	612.8022216878439	76.177	0.46414	76.231	76.048	76.512	0.053413	-0.043544	0.00018315	NaN	13.906	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230800	+		58611	15602	33622	33623							-0.010703538670668422
YKLDELDSLE	10	Unmodified	_YKLDELDSLE_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	612.803351	1223.59215	0.30243	0.00018533	-1.6559	-0.0010148	-1.3535	-0.00082942	612.8019504723447	76.324	0.45969	76.292	76.049	76.509	-0.031487	0.018136	-0.00018836	NaN	13.906	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244810	+		58612	15602	33622	33623							-0.010703538670668422
YKLKTEKST	9	Unmodified	_YKLKTEKST_					0	0	0			REV__MAP10|p.T965Qfs*18|1|0.17|ENSG00000212916|chr1:232807914-232807914|T/-|frameshift_variant	REV__MAP10|p.T965Qfs*18|1|0.17|ENSG00000212916|chr1:232807914-232807914|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.802734375	2	549.313689	1096.61282	0.12461	6.8448E-05	-1.6796	-0.00092263	-1.555	-0.00085418	549.3123546600649	18.495	0.62216	18.437	18.115	18.737	-0.058172					31	21	2	0	0	0	0.25988	1	1918	1918		3.9444	3.9444	1	43530	+		58613	19030	33623	33624	71606	71606					0.06838281303225813
YKLPLLRSL	9	Unmodified	_YKLPLLRSL_					0	0	0			REV__ENSG00000205085|ENST00000682356|GARIN1A	REV__ENSG00000205085|ENST00000682356|GARIN1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8529663085938	2	551.852784	1101.69102	0.56771	0.00031329	0.17963	9.9128E-05	0.74734	0.00041242	551.8528066081637	51.322	2.216	51.322	50.108	52.324	0					207	81	3	0	0	0	0.064268	1	11977	11977		47.594	1.5721	1	2369800	+		58614	18981	33624	33625	71607	71607					0.14423758679117782
YKLPLLRSL	9	Unmodified	_YKLPLLRSL_					0	0	0			REV__ENSG00000205085|ENST00000682356|GARIN1A	REV__ENSG00000205085|ENST00000682356|GARIN1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.8532104492188	2	551.852784	1101.69102	0.52694	0.0002908	0.17974	9.9191E-05	0.70669	0.00038999	551.8527879352579	51.386	2.1162	51.432	50.162	52.278	0.046577					222	77	4	0	0	0	0.19083	1	12107	12107		24.991	3.4008	1	2519200	+		58615	18981	33624	33625	71608	71608					0.14423758679117782
YKLPLLRSL	9	Unmodified	_YKLPLLRSL_					0	0	0			REV__ENSG00000205085|ENST00000682356|GARIN1A	REV__ENSG00000205085|ENST00000682356|GARIN1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.8533325195312	2	551.852784	1101.69102	0.4839	0.00026704	0.29413	0.00016232	0.77803	0.00042936	551.8528575357453	51.598	2.3361	51.608	50.114	52.451	0.0095634					250	87	4	0	0	0	0.07944	1	11863	11863		41.956	3.3408	1	2642500	+		58616	18981	33624	33625	71609	71609					0.14423758679117782
YKLRDRELYQK	11	Unmodified	_YKLRDRELYQK_					0	0	0			REV__nc|ENSG00000180891|Q9NWM3-2|CUEDC1	REV__nc|ENSG00000180891|Q9NWM3-2|CUEDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.2740173339844	3	504.615814	1510.82561	0.28145	0.00014203	0.75289	0.00037992	1.0343	0.00052195	504.616354815404	43.719	0.35926	43.719	43.519	43.878	0					17	12	2	0	0	0	0.33236	1	9584	9584		4.4062	3.9516	1	208010	+		58617	23115	33625	33626	71610	71610					0.09063167363069624
YKLRDRELYQK	11	Unmodified	_YKLRDRELYQK_					0	0	0			REV__nc|ENSG00000180891|Q9NWM3-2|CUEDC1	REV__nc|ENSG00000180891|Q9NWM3-2|CUEDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2738037109375	3	504.615814	1510.82561	0.35512	0.0001792	0.87551	0.0004418	1.2306	0.00062099	504.6161971028336	42.977	0.40961	43.062	42.861	43.271	0.085197					22	14	2	0	0	0	0.3325	1	9453	9453		4.1166	2.787	1	214550	+		58618	23115	33625	33626	71611	71611					0.09063167363069624
YKLRTVSK	8	Unmodified	_YKLRTVSK_					0	0	0		ENST00000589799.5_1_19:44740380-44740701:-|nuORF	ENST00000589799.5_1_19:44740380-44740701:-|nuORF	ENST00000589799.5_1_19:44740380-44740701:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7874755859375	2	497.805834	993.597115	0.24787	0.00012339	-0.007963	-3.964E-06	0.23991	0.00011943	497.8057010011187	26.307	0.51004	26.268	26.037	26.547	-0.038671					30	17	2	0	0	0	0.34367	1	4260	4260		4.3292	0	1	253060			58619	12166	33626	33627	71612	71612					0.10006039576853709
YKLRTVSK	8	Unmodified	_YKLRTVSK_					0	0	0		ENST00000589799.5_1_19:44740380-44740701:-|nuORF	ENST00000589799.5_1_19:44740380-44740701:-|nuORF	ENST00000589799.5_1_19:44740380-44740701:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	497.805834	993.597115	0.25612	0.0001275	0.056359	2.8056E-05	0.31248	0.00015555	497.8057846022691	26.277	0.57197	26.277	26.042	26.614	0	-0.019945	8.8443E-05	NaN	4.3292	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229060			58620	12166	33626	33627							0.10006039576853709
YKLRTVSK	8	Unmodified	_YKLRTVSK_					0	0	0		ENST00000589799.5_1_19:44740380-44740701:-|nuORF	ENST00000589799.5_1_19:44740380-44740701:-|nuORF	ENST00000589799.5_1_19:44740380-44740701:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	497.805834	993.597115	0.40075	0.0001995	-0.15778	-7.8545E-05	0.24297	0.00012095	497.80575971572387	26.367	0.56778	26.345	26.073	26.64	-0.022238	0.048148	-0.00012476	NaN	4.3292	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233130			58621	12166	33626	33627							0.10006039576853709
YKLSLELAQ	9	Unmodified	_YKLSLELAQ_					0	0	0			REV__CON__Q0V8M9	REV__CON__Q0V8M9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.3001708984375	2	532.802957	1063.59136	0.029915	1.5939E-05	-2.6093	-0.0013902	-2.5794	-0.0013743	532.8013599560302	12.481	0.32368	12.413	12.167	12.491	-0.06806					17	10	3	0	0	0	0.26204	1	139	139		1.4819	0	1	52108	+	+	58622	13260	33627	33628	71613	71613					0.06210896274501465
YKLWETVWK	9	Unmodified	_YKLWETVWK_					0	0	0			REV__ENSG00000185070|ENST00000330753|FLRT2	REV__ENSG00000185070|ENST00000330753|FLRT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	626.8404541015625	2	626.839874	1251.66519	0.69372	0.00043485	0.17424	0.00010922	0.86796	0.00054407	626.8398549002446	77.564	0.62231	77.564	77.308	77.93	0					48	22	3	0	0	0	0.31417	1	20041	20041		6.7232	0.51738	1	345120	+		58623	18353	33628	33629	71614	71614					0.04942864436839045
YKLWETVWK	9	Unmodified	_YKLWETVWK_					0	0	0			REV__ENSG00000185070|ENST00000330753|FLRT2	REV__ENSG00000185070|ENST00000330753|FLRT2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	626.839874	1251.66519	0.37588	0.00023562	0.55656	0.00034888	0.93244	0.00058449	626.8399489852316	77.492	0.70869	77.548	77.346	78.055	0.055412	-0.0044334	0.00064151	NaN	6.7232	48	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374820	+		58624	18353	33628	33629							0.04942864436839045
YKLWETVWK	9	Unmodified	_YKLWETVWK_					0	0	0			REV__ENSG00000185070|ENST00000330753|FLRT2	REV__ENSG00000185070|ENST00000330753|FLRT2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	626.839874	1251.66519	0.63782	0.00039981	-0.18127	-0.00011363	0.45654	0.00028618	626.8396611136569	77.576	0.49352	77.545	77.346	77.84	-0.031334	-0.0073193	-0.0002835	NaN	6.7232	44	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	544480	+		58625	18353	33628	33629							0.04942864436839045
YKMGENFHN	9	Unmodified	_YKMGENFHN_					0	0	0		L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|162|3|sense;L1PA3_dup1464|chr2:208773458-208776294:+|1.730898577886428|0.207304446788351|3.06|523.0|76|3|sense;L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|44|1|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|162|3|sense	L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|162|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.2511596679688	2	570.250566	1138.48658	0.59301	0.00033817	0.55724	0.00031776	1.1502	0.00065593	570.2508671730435	36.205	0.67094	36.291	36.112	36.783	0.086246					71	23	4	0	0	0	0.30459	1	7317	7317		8.1555	3.8263	1	1148200			58626	12476	33629	33630	71615	71615					-0.07712548473682546
YKMQYPLLL	9	Unmodified	_YKMQYPLLL_					0	0	0			REV__ENST00000331835.9_2_1:87329096-87329153:-|nuORF	REV__ENST00000331835.9_2_1:87329096-87329153:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8135375976562	2	584.825378	1167.6362	0.17433	0.00010195	0.61084	0.00035723	0.78516	0.00045918	584.8261406304408	94.82	0.75051	94.903	94.44	95.191	0.082779					123	63	3	0	0	0	0.33018	1	25282	25282		4.3292	0	1	224900	+		58627	20045	33630	33631	71616	71616					0.059090038162139535
YKNRYDQGYY	10	Unmodified	_YKNRYDQGYY_					0	0	0			REV__nc|ENSG00000173166|Q70E73-5|RAPH1	REV__nc|ENSG00000173166|Q70E73-5|RAPH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.7765808105469	3	457.210565	1368.60986	0.19057	8.7133E-05	0.99164	0.00045339	1.1822	0.00054052	457.2109133270165	32.269	0.41644	32.323	32.136	32.553	0.054371					27	14	3	0	0	0	0.32122	1	6140	6140		2.086	0	1	110470	+		58628	17764	33631	33632	71617	71617					-0.05969593821578201
YKPSTSISIFK	11	Unmodified	_YKPSTSISIFK_					0	0	0		ENSG00000183762|ENST00000400335|KREMEN1;nc|ENSG00000183762|Q96MU8|KREMEN1;nc|ENSG00000183762|Q96MU8-2|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.9117736816406	3	424.239573	1269.69689	0.050263	2.1323E-05	2.0343	0.00086302	2.0845	0.00088434	424.2404167728846	36.526	0.4547	36.526	36.332	36.787	0					23	15	2	0	0	0	0.33025	1	7372	7372		9.2438	1.2984	1	257230			58629	7401	33632	33633	71618	71618					0.07282812400126204
YKQKKELEHRL	11	Unmodified	_YKQKKELEHRL_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1;ENST00000503202.1_1_4:83323057-83323543:-|nuORF	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.8037414550781	3	491.284175	1470.8307	0.25169	0.00012365	2.893	0.0014213	3.1447	0.0015449	491.6196354425175	28.657	0.14925	28.657	28.611	28.76	0					6	4	2	0	0	0	0.33287	1	5047	5047		1.3296	0.82369	1	69279			58630	1358	33633	33634	71619	71619					0.11411471225710557
YKQVGCFL	8	Unmodified	_YKQVGCFL_					0	0	0		ENSG00000162407|ENST00000371250|PLPP3	ENSG00000162407|ENST00000371250|PLPP3	ENSG00000162407|ENST00000371250|PLPP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.7794189453125	2	479.246763	956.478974	-0.027828	-1.3337E-05	1.568	0.00075147	1.5402	0.00073814	479.2476732601191	42.645	0.35239	42.645	42.49	42.842	0					14	12	2	0	0	0	0.34046	1	9326	9326		14.582	2.0501	1	132630			58631	5567	33634	33635	71620	71620					-0.0010065600331472524
YKRAIVDCI	9	Unmodified	_YKRAIVDCI_					0	0	0		ENSG00000181789|ENST00000314797|COPG1;ENST00000513410.1_1_3:128982773-128985943:+|nuORF;nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1;ENSG00000158623|ENST00000425248|COPG2	ENSG00000181789|ENST00000314797|COPG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2639770507812	2	540.797152	1079.57975	0.62147	0.00033609	1.1111	0.00060086	1.7325	0.00093694	541.2997136449887	95.255	1.3062	95.253	94.702	96.008	-0.0020142					232	119	4	0	0	0	0.25706	1	25309	25309		6.7232	1.4925	1	199560			58632	7248;5365	33635	33636	71621	71621					0.043143759795157166
YKRCRKWIL	9	Unmodified	_YKRCRKWIL_					0	0	0		ENST00000523988.5_1_13:45969527-45969839:-|nuORF	ENST00000523988.5_1_13:45969527-45969839:-|nuORF	ENST00000523988.5_1_13:45969527-45969839:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3685913085938	2	633.36861	1264.72267	0.16085	0.00010188	0.60301	0.00038193	0.76386	0.0004838	633.368855753747	94.737	1.1468	94.737	94.247	95.394	0					172	104	2	0	0	0	0.34681	1	25428	25428		1.8442	0.36234	1	164490			58633	11518	33636	33637	71622	71622					0.1008942816142735
YKRCRKWIL	9	Unmodified	_YKRCRKWIL_					0	0	0		ENST00000523988.5_1_13:45969527-45969839:-|nuORF	ENST00000523988.5_1_13:45969527-45969839:-|nuORF	ENST00000523988.5_1_13:45969527-45969839:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3685913085938	2	633.36861	1264.72267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.66	1	116.69	116.19	117.19	0.020988								0	0	0	0.2672	1	30265	30265		0.52476	0	1				58634	11518	33636	33637	71623	71623					0.1008942816142735
YKRDRALKQ	9	Unmodified	_YKRDRALKQ_					0	0	0		ENSG00000136931|ENST00000373588|NR5A1;nc|ENSG00000116833|O00482-3|NR5A2;nc|ENSG00000116833|O00482-4|NR5A2;nc|ENSG00000116833|O00482-2|NR5A2;ENSG00000116833|ENST00000367362|NR5A2	ENSG00000136931|ENST00000373588|NR5A1;nc|ENSG00000116833|O00482-3|NR5A2	nc|ENSG00000116833|O00482-3|NR5A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3427124023438	2	589.343646	1176.67274	0.53659	0.00031623	-1.6027	-0.00094455	-1.0661	-0.00062831	589.3424349894842	92.188	0.83817	92.189	91.685	92.523	0.00046539					82	55	2	0	0	0	0.33276	1	24463	24463		3.9444	0.94915	1	256790			58635	4015;2757	33637	33638	71624	71624					0.09147016757128767
YKRDRALKQ	9	Unmodified	_YKRDRALKQ_					0	0	0		ENSG00000136931|ENST00000373588|NR5A1;nc|ENSG00000116833|O00482-3|NR5A2;nc|ENSG00000116833|O00482-4|NR5A2;nc|ENSG00000116833|O00482-2|NR5A2;ENSG00000116833|ENST00000367362|NR5A2	ENSG00000136931|ENST00000373588|NR5A1;nc|ENSG00000116833|O00482-3|NR5A2	nc|ENSG00000116833|O00482-3|NR5A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3447265625	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.82	1	117.84	117.34	118.34	0.023476								0	0	0	0.2646	1	30528	30528		1.6526	0.45928	1				58636	4015;2757	33637	33638	71625	71625					0.09147016757128767
YKRKLREL	8	Unmodified	_YKRKLREL_					0	0	0			REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.3455810546875	2	553.345658	1104.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.174	1	12.077	11.577	12.577	-0.096607								0	0	0	0.37992	1	50	50		0.79363	0	1		+		58637	13727	33638	33639	71626	71626					0.12861106250829835
YKRNRMIMT	9	Unmodified	_YKRNRMIMT_					0	0	0		ENST00000470776.1_1_3:8543537-8579195:+|nuORF;LMCD1|p.S233Qfs*3|1|0.14|ENSG00000071282|chr3:8548876-8548877|-/CAAA|frameshift_variant;nc|ENSG00000071282|Q9NZU5-2|LMCD1;ENSG00000071282|ENST00000157600|LMCD1	ENST00000470776.1_1_3:8543537-8579195:+|nuORF	ENST00000470776.1_1_3:8543537-8579195:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.57025146484375	3	404.882849	1211.62672	-0.43934	-0.00017788	-0.71569	-0.00028977	-1.155	-0.00046765	404.8827675358816	12.605	0.25344	12.605	12.498	12.751	0					19	8	3	0	0	0	0.2615	1	188	188		0.96228	0	1	49142			58638	956	33639	33640	71627	71627					0.02936912259019664
YKRTRLNIN	9	Unmodified	_YKRTRLNIN_					0	0	0			REV__ENSG00000144824|ENST00000431670|PHLDB2	REV__ENSG00000144824|ENST00000431670|PHLDB2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3427734375	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.65	1	112.63	112.13	113.13	-0.015625								0	0	0	0.2672	1	29299	29299		0.52476	0	1		+		58639	16264	33640	33641	71628	71628					0.09147016757128767
YKRWFIFL	8	Unmodified	_YKRWFIFL_					0	0	0		ENST00000409673.7_1_2:175260533-175263141:+|nuORF	ENST00000409673.7_1_2:175260533-175263141:+|nuORF	ENST00000409673.7_1_2:175260533-175263141:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8336791992188	2	586.834394	1171.65424	0.32502	0.00019074	-0.60331	-0.00035404	-0.27828	-0.00016331	586.8337481982454	80.405	1.0904	80.405	79.797	80.888	0					68	42	2	0	0	0	0.34319	1	20711	20711		5.7604	1.816	1	761360			58640	10255	33641	33642	71629	71629					0.07527506853216437
YKRWFIFL	8	Unmodified	_YKRWFIFL_					0	0	0		ENST00000409673.7_1_2:175260533-175263141:+|nuORF	ENST00000409673.7_1_2:175260533-175263141:+|nuORF	ENST00000409673.7_1_2:175260533-175263141:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8336791992188	2	586.834394	1171.65424	0.42505	0.00024943	-0.59609	-0.00034981	-0.17104	-0.00010037	586.8336548026863	79.49	0.66072	79.49	79.164	79.825	0					45	25	2	0	0	0	0.34319	1	20711	20711		5.7604	1.816	1	265140			58641	10255	33641	33642	71630	71630					0.07527506853216437
YKRWFIFL	8	Unmodified	_YKRWFIFL_					0	0	0		ENST00000409673.7_1_2:175260533-175263141:+|nuORF	ENST00000409673.7_1_2:175260533-175263141:+|nuORF	ENST00000409673.7_1_2:175260533-175263141:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8344116210938	2	586.834394	1171.65424	0.32155	0.0001887	0.024178	1.4189E-05	0.34573	0.00020289	586.8339802366073	81.02	0.61603	81.02	80.888	81.504	0					51	29	2	0	0	0	0.34319	1	21165	21165		5.7604	2.1639	1	359600			58642	10255	33641	33642	71631	71631					0.07527506853216437
YKRWFIFL	8	Unmodified	_YKRWFIFL_					0	0	0		ENST00000409673.7_1_2:175260533-175263141:+|nuORF	ENST00000409673.7_1_2:175260533-175263141:+|nuORF	ENST00000409673.7_1_2:175260533-175263141:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.834228515625	2	586.834394	1171.65424	0.17031	9.9942E-05	-0.064652	-3.794E-05	0.10565	6.2001E-05	586.8339495806603	80.379	1.6971	80.445	79.699	81.396	0.065094					142	71	3	0	0	0	0.34319	1	20757	20757		5.7604	1.0044	1	591080			58643	10255	33641	33642	71632	71632					0.07527506853216437
YKSGALRPP	9	Unmodified	_YKSGALRPP_					0	0	0			REV__chr7:128463642-128466563|420|12.93|0.0|20.3|+|2|TE_info:SVA_B,SVA_B_dup342,SVA,Retroposon,donor,+,128462839,128463642|None,EFCAB3P1|9	REV__chr7:128463642-128466563|420|12.93|0.0|20.3|+|2|TE_info:SVA_B,SVA_B_dup342,SVA,Retroposon,donor,+,128462839,128463642|None,EFCAB3P1|9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.23974609375	2	494.782359	987.550165	0.21079	0.0001043	3.549	0.001756	3.7598	0.0018603	494.7841004085906	19.345	0.30448	19.345	19.157	19.461	0					16	10	2	0	0	0	0.26168	1	2232	2232		1.8442	0	1	33023	+		58644	13216	33642	33643	71633	71633					0.0558918002569726
YKSLSQSIV	9	Unmodified	_YKSLSQSIV_					0	0	0			REV__nc|ENSG00000114573|P38606-2|ATP6V1A	REV__nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.9854736328125	2	512.787307	1023.56006	0.1662	8.5224E-05	3.8262	0.001962	3.9924	0.0020472	512.789117097168	94.859	0.15111	94.942	94.849	95	0.082779					19	13	2	0	0	0	0.25779	1	25304	25304		6.2058	0	1	69114	+		58645	14839	33643	33644	71634	71634					0.0492232324043016
YKSPTPSQF	9	Unmodified	_YKSPTPSQF_					0	0	0			REV__nc|ENSG00000133816|O94851|MICAL2	REV__nc|ENSG00000133816|O94851|MICAL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.3551635742188	2	527.763832	1053.51311	0.44914	0.00023704	0.9833	0.00051895	1.4324	0.00075599	527.7638325388385	43.858	0.68164	43.858	43.494	44.176	0					67	24	5	0	0	0	0.24993	1	9616	9616		5.2969	0	1	565760	+		58646	22992	33644	33645	71635	71635					-0.011505363107289668
YKSRKNNDIE	10	Unmodified	_YKSRKNNDIE_					0	0	0		nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000171189|P39086|GRIK1;ENSG00000171189|ENST00000327783|GRIK1	nc|ENSG00000171189|P39086-2|GRIK1	nc|ENSG00000171189|P39086-2|GRIK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.825439453125	2	633.825483	1265.63641	0.1979	0.00012543	-0.3725	-0.0002361	-0.1746	-0.00011067	633.8252017333397	100.13	0.68082	100.17	99.768	100.45	0.038994					196	89	3	0	0	0	0.41168	1	26711	26711		1.3295	0.13619	1	243740			58647	6521	33645	33646	71636	71636					0.01422095069756324
YKTAKRIHM	9	Unmodified	_YKTAKRIHM_					0	0	0			REV__ENST00000582935.1_1_18:47016781-47017264:-|nuORF	REV__ENST00000582935.1_1_18:47016781-47017264:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.3245239257812	2	574.323868	1146.63318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.23	1	114.24	113.74	114.74	0.016708								0	0	0	0.26334	1	29708	29708		2.0598	0	1		+		58648	19296	33646	33647	71637	71637					0.06573173482047423
YKTGFGGKFGV	11	Unmodified	_YKTGFGGKFGV_					0	0	0		ENSG00000085733|ENST00000301843|CTTN;ENST00000483662.2_1_11:70266591-70267883:+|nuORF	ENSG00000085733|ENST00000301843|CTTN	ENSG00000085733|ENST00000301843|CTTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.8085327148438	2	580.808574	1159.60259	0.26947	0.00015651	0.16401	9.5261E-05	0.43348	0.00025177	580.8083927506116	44.127	0.95138	44.127	43.819	44.771	0					94	34	5	0	0	0	0.23019	1	9789	9789		28.495	4.4739	1	2250900			58649	1263	33647	33648	71638	71638					0.029177183686670105
YKTGFGGKFGV	11	Unmodified	_YKTGFGGKFGV_					0	0	0		ENSG00000085733|ENST00000301843|CTTN;ENST00000483662.2_1_11:70266591-70267883:+|nuORF	ENSG00000085733|ENST00000301843|CTTN	ENSG00000085733|ENST00000301843|CTTN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.80859375	2	580.808574	1159.60259	0.32174	0.00018687	0.33969	0.0001973	0.66143	0.00038416	580.8084618165731	43.762	1.021	43.839	43.425	44.446	0.077515					103	37	4	0	0	0	0.32231	1	9705	9705		19.362	8.538	1	2464700			58650	1263	33647	33648	71639	71639					0.029177183686670105
YKTGFGGKFGV	11	Unmodified	_YKTGFGGKFGV_					0	0	0		ENSG00000085733|ENST00000301843|CTTN;ENST00000483662.2_1_11:70266591-70267883:+|nuORF	ENSG00000085733|ENST00000301843|CTTN	ENSG00000085733|ENST00000301843|CTTN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.8087158203125	2	580.808574	1159.60259	0.33512	0.00019464	0.32427	0.00018834	0.65938	0.00038298	580.808465855075	43.789	1.2172	43.873	43.434	44.652	0.083996					114	44	4	0	0	0	0.19931	1	9645	9645		31.268	2.1868	1	2612300			58651	1263	33647	33648	71640	71640					0.029177183686670105
YKTKDNIE	8	Unmodified	_YKTKDNIE_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7695007324219	2	505.761289	1009.50803	0.51197	0.00025894	-1.8603	-0.00094089	-1.3484	-0.00068195	505.760508042806	45.572	0.31561	45.632	45.418	45.734	0.059837					13	10	2	0	0	0	0.20663	1	10173	10173		41.84	1.8823	1	102030	+		58652	16009	33648	33649	71641	71641					0.003651598266515066
YKVACLLLI	9	Unmodified	_YKVACLLLI_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L;ENST00000548980.1_1_12:54925998-54930034:+|nuORF	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3170166015625	2	518.317189	1034.61982	0.28269	0.00014652	-0.06463	-3.3499E-05	0.21806	0.00011303	518.3170450969914	74.204	2.9158	74.256	72.538	75.454	0.052361					235	104	4	0	0	0	0.33018	1	18953	18953		4.3292	4.3292	1	1660300			58653	3097	33649	33650	71642	71642					0.10389922650119843
YKVDSPKNF	9	Unmodified	_YKVDSPKNF_					0	0	0		ENSG00000197859|ENST00000651351|ADAMTSL2	ENSG00000197859|ENST00000651351|ADAMTSL2	ENSG00000197859|ENST00000651351|ADAMTSL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7774658203125	2	549.284931	1096.55531	0.45428	0.00024953	1.6923	0.00092955	2.1466	0.0011791	549.2859295011934	74.44	0.34738	74.493	74.324	74.671	0.052361					14	11	2	0	0	0	0.25714	1	19086	19086		15.248	0.41021	1	278050			58654	8005	33650	33651	71643	71643					0.010894390976545765
YKVEYPIMY	9	Oxidation (M)	_YKVEYPIM(Oxidation (M))Y_		YKVEYPIM(1)Y		YKVEYPIM(140)Y	0	0	1		ENSG00000143198|ENST00000367889|MGST3;ENST00000488688.1_1_1:165619084-165620325:+|nuORF;ENST00000477450.1_1_1:165619084-165623023:+|nuORF	ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.2968139648438	2	611.29665	1220.57875	0.54142	0.00033097	-0.11369	-6.9496E-05	0.42773	0.00026147	611.2964932723827	53.769	0.88868	53.769	53.516	54.405	0					101	32	5	0	0	0	9.2305E-05	3	12742	12694;12742;12794		142.08	116.68	1	3681600			58655	4488	33651	33652	71644;71645;71646	71645		567			-0.022718831800375483
YKVEYPIMY	9	Oxidation (M)	_YKVEYPIM(Oxidation (M))Y_		YKVEYPIM(1)Y		YKVEYPIM(130)Y	0	0	1		ENSG00000143198|ENST00000367889|MGST3;ENST00000488688.1_1_1:165619084-165620325:+|nuORF;ENST00000477450.1_1_1:165619084-165623023:+|nuORF	ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.2967529296875	2	611.29665	1220.57875	0.21972	0.00013431	0.21815	0.00013336	0.43787	0.00026767	611.2967029695031	53.72	0.92054	53.776	53.482	54.403	0.056255					94	34	4	0	0	0	0.00045155	2	12718	12672;12718		129.77	99.136	1	3878600			58656	4488	33651	33652	71647;71648	71648		567			-0.022718831800375483
YKVEYPIMY	9	Oxidation (M)	_YKVEYPIM(Oxidation (M))Y_		YKVEYPIM(1)Y		YKVEYPIM(130)Y	0	0	1		ENSG00000143198|ENST00000367889|MGST3;ENST00000488688.1_1_1:165619084-165620325:+|nuORF;ENST00000477450.1_1_1:165619084-165623023:+|nuORF	ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.2969970703125	2	611.29665	1220.57875	0.40553	0.0002479	0.21979	0.00013435	0.62532	0.00038225	611.2966800149525	53.985	0.86636	53.969	53.709	54.575	-0.015923					94	30	5	0	0	0	0.00045155	3	12798	12751;12798;12851		129.77	104.37	1	4017700			58657	4488	33651	33652	71649;71650;71651	71650		567			-0.022718831800375483
YKVKSRWFG	9	Unmodified	_YKVKSRWFG_					0	0	0			REV__ENST00000562120.1_1_16:2093562-2096203:-|nuORF	REV__ENST00000562120.1_1_16:2093562-2096203:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.8134765625	2	585.824558	1169.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.44	1	98.502	98.002	99.002	0.061516								0	0	0	0.25631	1	26348	26348		4.3292	0.38484	1		+		58658	13655	33652	33653	71652	71652					0.05653130842438259
YKVLGTFLF	9	Unmodified	_YKVLGTFLF_					0	0	0		nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2736206054688	2	544.312961	1086.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.12	1	113.12	112.62	113.62	0								0	0	0	0.25499	1	29385	29385		4.756	0	1				58659	4412	33653	33654	71653	71653					0.07152692005138306
YKVLGTFLF	9	Unmodified	_YKVLGTFLF_					0	0	0		nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.3121337890625	2	544.312961	1086.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.46	1	119.46	118.96	119.96	0								0	0	0	0.26334	1	30824	30824		2.0598	0	1				58660	4412	33653	33654	71654	71654					0.07152692005138306
YKVLGTFLF	9	Unmodified	_YKVLGTFLF_					0	0	0		nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.311767578125	2	544.312961	1086.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.33	1	115.3	114.8	115.8	-0.020988								0	0	0	0.26334	1	29911	29911		2.0598	0	1				58661	4412	33653	33654	71655	71655					0.07152692005138306
YKVLGTFLF	9	Unmodified	_YKVLGTFLF_					0	0	0		nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	nc|ENSG00000141934|O43688-3|PLPP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.301513671875	2	544.312961	1086.61137	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.477	1	93.477	92.977	93.977	-0.00051117								0	0	0	0.24311	1	24894	24894		8.5933	0	1				58662	4412	33653	33654	71656	71656					0.07152692005138306
YKWEQINA	8	Unmodified	_YKWEQINA_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2840576171875	2	526.263999	1050.51345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.049	1	44.049	43.549	44.549	0								0	0	0	0.34492	1	9729	9729		16.942	0	1				58663	8109	33654	33655	71657	71657					-0.0097911659086094
YKWWQKYQK	9	Unmodified	_YKWWQKYQK_					0	0	0		ENST00000482844.5_1_3:3196419-3214524:-|nuORF;ENST00000491834.5_1_3:3197887-3221343:-|nuORF;nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN	ENST00000482844.5_1_3:3196419-3214524:-|nuORF	ENST00000482844.5_1_3:3196419-3214524:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	452.7495422363281	3	453.239907	1356.69789	0.18172	8.2362E-05	1.4744	0.00066824	1.6561	0.0007506	453.24058692381914	24.081	0.3447	24.042	23.878	24.222	-0.038927					17	11	2	0	0	0	0.25346	1	3677	3677		10.8	1.0353	1	41189			58664	2537	33655	33656	71658	71658					0.033810715596928276
YKYLWRLM	8	Unmodified	_YKYLWRLM_					0	0	0		ENSG00000120800|ENST00000261637|UTP20;UTP20|p.F1622Lfs*17|1|0.09|ENSG00000120800|chr12:101346566-101346567|-/TTTAGTATCGTATTCTC|frameshift_variant;ENST00000551825.1_1_12:101673946-101684681:+|nuORF	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.833740234375	2	586.817887	1171.62122	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.766	1	79.737	79.237	80.237	-0.028931								0	0	0	0.36169	1	20684	20684		9.3474	1.1919	1				58665	2965	33656	33657	71659	71659					0.0422755673885149
YKYRHQYP	8	Unmodified	_YKYRHQYP_					0	0	0		ENSG00000119900|ENST00000370435|OGFRL1	ENSG00000119900|ENST00000370435|OGFRL1	ENSG00000119900|ENST00000370435|OGFRL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.790283203125	2	577.790715	1153.56688	0.03065	1.7709E-05	-0.52812	-0.00030514	-0.49747	-0.00028744	577.7903841359481	12.595	0.34714	12.498	12.384	12.731	-0.096607					19	11	2	0	0	0	0.46491	1	181	181		0.69038	0.088878	1	120060			58666	2912	33657	33658	71660	71660					-0.0037631908835464856
YKYRHQYP	8	Unmodified	_YKYRHQYP_					0	0	0		ENSG00000119900|ENST00000370435|OGFRL1	ENSG00000119900|ENST00000370435|OGFRL1	ENSG00000119900|ENST00000370435|OGFRL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.7903442382812	2	577.790715	1153.56688	-0.17708	-0.00010232	-0.50051	-0.00028919	-0.67759	-0.0003915	577.7903498780938	12.614	0.35671	12.547	12.434	12.791	-0.067496					22	11	3	0	0	0	0.46491	1	187	187		0.69038	0	1	126360			58667	2912	33657	33658	71661	71661					-0.0037631908835464856
YKYYVGRK	8	Unmodified	_YKYYVGRK_					0	0	0		nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	nc|ENSG00000126226|Q5JVF3-3|PCID2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2970581054688	2	538.798009	1075.58147	0.011108	5.9851E-06	2.6541	0.00143	2.6652	0.001436	539.3006550155543	34.477	1.2817	34.554	33.834	35.116	0.077377					93	45	4	0	0	0	0.34247	1	6837	6837		8.5933	0	1	356850			58668	3263	33658	33659	71662	71662					0.04669753059783943
YLAAKKAVW	9	Unmodified	_YLAAKKAVW_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3099975585938	2	525.310752	1048.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.73	1	97.73	97.23	98.23	0								0	0	0	0.24522	1	26141	26141		7.9102	3.1541	1				58669	2759	33659	33660	71663	71663					0.08459227582216045
YLAAKKAVW	9	Unmodified	_YLAAKKAVW_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3099975585938	2	525.310752	1048.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.849	1	97.849	97.349	98.349	0								0	0	0	0.24522	1	26174	26174		7.9102	0	1				58670	2759	33659	33660	71664	71664					0.08459227582216045
YLAAKKAVW	9	Unmodified	_YLAAKKAVW_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3099975585938	2	525.310752	1048.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.976	1	97.976	97.476	98.476	0								0	0	0	0.24522	1	26208	26208		7.9102	0.62092	1				58671	2759	33659	33660	71665	71665					0.08459227582216045
YLAAKKAVW	9	Unmodified	_YLAAKKAVW_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3099975585938	2	525.310752	1048.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.099	1	98.099	97.599	98.599	0								0	0	0	0.24522	1	26242	26242		7.9102	0.62092	1				58672	2759	33659	33660	71666	71666					0.08459227582216045
YLAAKKAVW	9	Unmodified	_YLAAKKAVW_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.31005859375	2	525.310752	1048.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.457	1	98.457	97.957	98.957	0								0	0	0	0.25631	1	26344	26344		4.3292	1.0479	1				58673	2759	33659	33660	71667	71667					0.08459227582216045
YLAAKKAVW	9	Unmodified	_YLAAKKAVW_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3098754882812	2	525.310752	1048.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.594	1	97.655	97.155	98.155	0.061516								0	0	0	0.24522	1	26115	26115		7.9102	1.7044	1				58674	2759	33659	33660	71668	71668					0.08459227582216045
YLAAKKAVW	9	Unmodified	_YLAAKKAVW_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3098754882812	2	525.310752	1048.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.715	1	97.777	97.277	98.277	0.061516								0	0	0	0.24522	1	26148	26148		7.9102	2.6795	1				58675	2759	33659	33660	71669	71669					0.08459227582216045
YLAAKKAVW	9	Unmodified	_YLAAKKAVW_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3099365234375	2	525.310752	1048.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.84	1	97.902	97.402	98.402	0.061516								0	0	0	0.24522	1	26181	26181		7.9102	2.6795	1				58676	2759	33659	33660	71670	71670					0.08459227582216045
YLAAKKAVW	9	Unmodified	_YLAAKKAVW_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3099975585938	2	525.310752	1048.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.961	1	98.022	97.522	98.522	0.061516								0	0	0	0.24522	1	26215	26215		7.9102	2.6795	1				58677	2759	33659	33660	71671	71671					0.08459227582216045
YLAAKKAVW	9	Unmodified	_YLAAKKAVW_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3097534179688	2	525.310752	1048.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.086	1	98.147	97.647	98.647	0.061516								0	0	0	0.24522	1	26247	26247		7.9102	2.6795	1				58678	2759	33659	33660	71672	71672					0.08459227582216045
YLAAKKAVW	9	Unmodified	_YLAAKKAVW_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3101196289062	2	525.310752	1048.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.207	1	98.268	97.768	98.768	0.061516								0	0	0	0.24522	1	26283	26283		7.9102	1.187	1				58679	2759	33659	33660	71673	71673					0.08459227582216045
YLAAKKAVW	9	Unmodified	_YLAAKKAVW_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3102416992188	2	525.310752	1048.60695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.346	1	98.408	97.908	98.908	0.061516								0	0	0	0.24522	1	26323	26323		7.9102	2.6795	1				58680	2759	33659	33660	71674	71674					0.08459227582216045
YLAAQIMLF	9	Unmodified	_YLAAQIMLF_					0	0	0		nc|ENSG00000175518|Q8IYU4-2|UBQLNL;ENSG00000175518|ENST00000380184|UBQLNL	nc|ENSG00000175518|Q8IYU4-2|UBQLNL	nc|ENSG00000175518|Q8IYU4-2|UBQLNL	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.3056640625	2	535.291171	1068.56779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.119	1	56.1	55.6	56.6	-0.019081								0	0	0	0.18607	1	13444	13444		26.341	8.2063	1				58681	6871	33660	33661	71675	71675					0.036247592363451986
YLAARPGP	8	Unmodified	_YLAARPGP_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;FAM120A|p.G386Afs*27|1|0.58|ENSG00000048828|chr9:93516004-93516004|G/-|frameshift_variant	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.73760986328125	2	422.73742	843.460287	0.21393	9.0435E-05	0.50711	0.00021437	0.72104	0.00030481	422.73746880176867	47.908	1.1159	47.908	47.578	48.694	0					81	39	3	0	0	0	0.30517	1	10892	10892		30.225	1.738	1	5742900			58682	12572	33661	33662	71676	71676					0.03229550417131577
YLAARPGP	8	Unmodified	_YLAARPGP_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;FAM120A|p.G386Afs*27|1|0.58|ENSG00000048828|chr9:93516004-93516004|G/-|frameshift_variant	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.7377624511719	2	422.73742	843.460287	0.35682	0.00015084	0.26116	0.0001104	0.61797	0.00026124	422.73737286233626	47.846	1.206	47.893	47.565	48.771	0.04752					84	44	3	0	0	0	0.30517	1	10937	10937		30.225	1.738	1	5128500			58683	12572	33661	33662	71677	71677					0.03229550417131577
YLAARPGP	8	Unmodified	_YLAARPGP_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;FAM120A|p.G386Afs*27|1|0.58|ENSG00000048828|chr9:93516004-93516004|G/-|frameshift_variant	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.7375793457031	2	422.73742	843.460287	0.23296	9.8482E-05	0.31115	0.00013153	0.54411	0.00023002	422.737413104574	47.807	1.0602	47.851	47.611	48.672	0.04332					85	39	3	0	0	0	0.30517	2	10860	10860;10908		30.225	1.738	1	5987900			58684	12572	33661	33662	71678;71679	71678					0.03229550417131577
YLAARPGP	8	Unmodified	_YLAARPGP_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;FAM120A|p.G386Afs*27|1|0.58|ENSG00000048828|chr9:93516004-93516004|G/-|frameshift_variant	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	422.73742	843.460287	0.21393	9.0435E-05	0.50711	0.00021437	0.72104	0.00030481	422.73746880176867	47.908	1.1159	47.908	47.578	48.694	0	0.024066	0.00011686	NaN	30.225	81	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5742900			58685	12572	33661	33662							0.03229550417131577
YLAARPGP	8	Unmodified	_YLAARPGP_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;FAM120A|p.G386Afs*27|1|0.58|ENSG00000048828|chr9:93516004-93516004|G/-|frameshift_variant	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	422.73742	843.460287	0.35682	0.00015084	0.26116	0.0001104	0.61797	0.00026124	422.73737286233626	47.846	1.206	47.893	47.565	48.771	0.04752	0.0091978	-9.109E-05	NaN	30.225	84	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5128500			58686	12572	33661	33662							0.03229550417131577
YLADAEERP	9	Unmodified	_YLADAEERP_					0	0	0			REV__nc|ENSG00000100336|Q9BPW4-3|APOL4	REV__nc|ENSG00000100336|Q9BPW4-3|APOL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8169555664062	2	532.256371	1062.49819	0.39811	0.0002119	-0.97134	-0.000517	-0.57323	-0.00030511	532.2560192515031	76.994	0.19677	77.05	76.953	77.15	0.055412					9	6	2	0	0	0	0.25202	1	19833	19833		10.824	4.1008	1	61419	+		58687	14181	33662	33663	71680	71680					-0.0305602817873023
YLADGDLHSDG	11	Unmodified	_YLADGDLHSDG_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.7529907226562	2	581.754192	1161.49383	0.26704	0.00015535	-1.5721	-0.00091459	-1.3051	-0.00075923	581.7532588067558	80.402	0.39171	80.402	80.177	80.569	0					23	14	2	0	0	0	0.44192	1	20910	20910		5.7319	1.4026	1	151920			58688	1428	33663	33664	71681	71681					-0.08045537392285951
YLADGDLHSDG	11	Unmodified	_YLADGDLHSDG_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	581.754192	1161.49383	0.20274	0.00011794	-1.4902	-0.00086691	-1.2874	-0.00074897	581.7532910340476	80.334	0.33366	80.4	80.213	80.546	0.065102	-0.0011757	5.6357E-05	NaN	5.7319	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118860			58689	1428	33663	33664							-0.08045537392285951
YLADQFQNGY	10	Unmodified	_YLADQFQNGY_					0	0	0			REV__ENSG00000023572|ENST00000367439|GLRX2	REV__ENSG00000023572|ENST00000367439|GLRX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.776611328125	2	609.774928	1217.5353	0.081158	4.9488E-05	0.53221	0.00032453	0.61337	0.00037402	609.7752071640899	61.996	0.5219	61.987	61.728	62.25	-0.0085564					38	18	3	0	0	0	0.37133	1	15208	15208		8.7454	8.7454	1	304160	+		58690	13472	33664	33665	71682	71682					-0.064763566329475
YLAEHVILS	9	Unmodified	_YLAEHVILS_					0	0	0			REV__ENSG00000052802|ENST00000261507|MSMO1	REV__ENSG00000052802|ENST00000261507|MSMO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2462158203125	2	522.78985	1043.56515	0.31907	0.00016681	-0.67381	-0.00035226	-0.35474	-0.00018546	522.7894504379375	67.447	0.69037	67.431	67.148	67.838	-0.016296					39	23	2	0	0	0	0.25066	1	16850	16850		11.64	0	1	271200	+		58691	13573	33665	33666	71683	71683					0.04510627103036313
YLAEVTREF	9	Unmodified	_YLAEVTREF_					0	0	0			REV__ENST00000551123.5_1_12:98989412-98995303:+|nuORF	REV__ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.8207397460938	2	564.290214	1126.56587	0.27115	0.00015301	0.46508	0.00026244	0.73623	0.00041545	564.2899950160772	80.445	2.5344	80.418	79.6	82.134	-0.026825					217	100	3	0	0	0	0.25066	1	20721	20721		1.6526	0	1	535790	+		58692	13811	33666	33667	71684	71684					0.007654217520894235
YLAFFKWWS	9	Unmodified	_YLAFFKWWS_					0	0	0		nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.7759399414062	2	624.316035	1246.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.517	1	81.517	81.017	82.017	0								0	0	0	0.25631	1	21238	21238		4.3292	0.38484	1				58693	8517	33667	33668	71685	71685					0.004072102366535546
YLAFFKWWS	9	Unmodified	_YLAFFKWWS_					0	0	0		nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.3133544921875	2	624.316035	1246.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.81	1	81.81	81.31	82.31	0								0	0	0	0.25858	1	21328	21328		3.5965	0.8613	1				58694	8517	33667	33668	71686	71686					0.004072102366535546
YLAHFIEGL	9	Unmodified	_YLAHFIEGL_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.3115234375	2	531.784567	1061.55458	0.50969	0.00027104	-0.28557	-0.00015186	0.22412	0.00011918	531.7848787257449	66.86	0.4752	66.86	66.6	67.076	0					27	16	2	0	0	0	0.23783	1	16698	16698		18.135	0.69234	1	173960			58695	3681	33668	33669	71687	71687					0.026266444486282126
YLAHFIEGL	9	Unmodified	_YLAHFIEGL_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.311279296875	2	531.784567	1061.55458	0.30285	0.00016105	-0.11107	-5.9067E-05	0.19178	0.00010198	531.7848622628713	66.904	0.45964	66.891	66.603	67.062	-0.013596					32	16	3	0	0	0	0.18943	1	16674	16674		23.148	5.0134	1	221720			58696	3681	33668	33669	71688	71688					0.026266444486282126
YLAISMQLS	9	Unmodified	_YLAISMQLS_					0	0	0			REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	REV__ENST00000424326.5_1_2:167262092-167297919:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2866821289062	2	513.270435	1024.52632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.506	1	48.506	48.006	49.006	0								0	0	0	0.21353	1	11104	11104		18.146	2.2992	1		+		58697	15816	33669	33670	71689	71689					0.015035784770134342
YLAKEIKKKI	10	Unmodified	_YLAKEIKKKI_					0	0	0			REV__ENSG00000198092|ENST00000356291|TMPRSS11F	REV__ENSG00000198092|ENST00000356291|TMPRSS11F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.559326171875	3	411.935825	1232.78564	0.3664	0.00015094	-2.217	-0.00091326	-1.8506	-0.00076233	411.93491120674094	36.024	0.42653	36.11	35.818	36.244	0.08625					22	15	2	0	0	0	0.31942	1	7301	7301		3.5871	0.85186	1	229020	+		58698	18798	33670	33671	71690	71690					0.17856272430458375
YLAKVYVSL	9	Unmodified	_YLAKVYVSL_					0	0	0		nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7433471679688	2	528.310418	1054.60628	0.40516	0.00021405	-0.76254	-0.00040286	-0.35737	-0.0001888	528.3096630233053	59.215	0.4454	59.307	59.015	59.46	0.091301					23	15	2	0	0	0	0.25323	1	14321	14321		10.074	0	1	292380			58699	5975	33671	33672	71691	71691					0.08116388142502728
YLAKVYVSL	9	Unmodified	_YLAKVYVSL_					0	0	0		nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	528.310418	1054.60628	0.39456	0.00020845	-0.47742	-0.00025222	-0.082853	-4.3772E-05	528.3097643417098	59.351	0.29353	59.351	59.215	59.508	0	0.019429	0.00026156	NaN	10.074	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194590			58700	5975	33671	33672							0.08116388142502728
YLAKVYVSL	9	Unmodified	_YLAKVYVSL_					0	0	0		nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.310418	1054.60628	0.63982	0.00033803	-0.89277	-0.00047166	-0.25294	-0.00013363	528.3097921357381	59.352	0.37433	59.338	59.113	59.488	-0.014271	0.0056872	-0.00017731	NaN	10.074	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181230			58701	5975	33671	33672							0.08116388142502728
YLALKGVP	8	Unmodified	_YLALKGVP_					0	0	0			REV__ME3|p.V396Sfs*8|1|0.05|ENSG00000151376|chr11:86448202-86448202|T/-|frameshift_variant	REV__ME3|p.V396Sfs*8|1|0.05|ENSG00000151376|chr11:86448202-86448202|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.2646179199219	2	430.765646	859.516739	-0.073447	-3.1638E-05	-0.080673	-3.4751E-05	-0.15412	-6.639E-05	430.76629503738866	68.087	1.7437	68.071	67.262	69.006	-0.016296					77	61	2	0	0	0	0.33995	1	17060	17060		15.768	10.008	1	217800	+		58702	16537	33672	33673	71692	71692					0.08136178253801063
YLALSRRSS	9	Unmodified	_YLALSRRSS_					0	0	0			REV__ENST00000581080.1_1_17:38497122-38497602:-|nuORF	REV__ENST00000581080.1_1_17:38497122-38497602:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.7578735351562	2	526.795998	1051.57744	0.47999	0.00025286	2.911	0.0015335	3.391	0.0017863	527.2984000894132	38.196	0.26094	38.294	38.176	38.437	0.097527					12	8	2	0	0	0	0.2451	1	7966	7966		15.847	2.3393	1	148430	+		58703	22481	33673	33674	71693	71693					0.05371663566097595
YLALVKNL	8	Unmodified	_YLALVKNL_					0	0	0		ENST00000397977.7_1_8:19689560-19689605:+|nuORF	ENST00000397977.7_1_8:19689560-19689605:+|nuORF	ENST00000397977.7_1_8:19689560-19689605:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.23748779296875	2	467.292028	932.569503	0.35489	0.00016584	-0.12752	-5.9587E-05	0.22738	0.00010625	467.29194841354035	54.125	0.4424	54.11	53.893	54.335	-0.015923					24	15	2	0	0	0	0.25627	1	12780	12780		38.151	0	1	289900			58704	10149	33674	33675	71694	71694					0.10052136316596716
YLARQELTL	9	Unmodified	_YLARQELTL_					0	0	0		ENST00000318602.11_1_12:9268543-9268723:-|nuORF	ENST00000318602.11_1_12:9268543-9268723:-|nuORF	ENST00000318602.11_1_12:9268543-9268723:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.295166015625	2	553.813856	1105.61316	0.57023	0.0003158	-1.1024	-0.00061054	-0.5322	-0.00029474	553.8132863018905	56.445	0.58178	56.445	56.267	56.849	0					39	21	2	0	0	0	0.17242	1	13598	13598		29.082	4.0906	1	931840			58705	9367	33675	33676	71695	71695					0.06457701023077789
YLARTGERQ	9	Unmodified	_YLARTGERQ_					0	0	0			REV__ENSG00000181240|ENST00000321510|SLC25A41	REV__ENSG00000181240|ENST00000321510|SLC25A41	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7728881835938	2	547.291079	1092.56761	0.60055	0.00032868	0.22495	0.00012311	0.8255	0.00045179	547.2912726640583	26.959	0.64412	26.948	26.595	27.239	-0.01156					39	22	2	0	0	0	0.24848	1	4478	4478		13.906	2.2658	1	273450	+		58706	18139	33676	33677	71696	71696					0.025024755606864346
YLARYNVL	8	Unmodified	_YLARYNVL_					0	0	0			REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	REV__nc|ENSG00000198399|Q9NZM3-2|ITSN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.2860412597656	2	506.284734	1010.55492	0.26131	0.0001323	1.2261	0.00062073	1.4874	0.00075303	506.2851075295871	52.037	0.62486	52.037	51.729	52.354	0					78	22	5	0	0	0	0.33916	1	12252	12252		26.341	3.1929	1	2397600	+		58707	18821	33677	33678	71697	71697					0.05006064168458124
YLASLRAEML	10	Unmodified	_YLASLRAEML_					0	0	0			REV__ENSG00000196305|ENST00000443024|IARS1	REV__ENSG00000196305|ENST00000443024|IARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.744873046875	2	583.815541	1165.61653	0.46028	0.00026872	-3.5383	-0.0020657	-3.0781	-0.001797	583.8134895080924	64.723	0.34275	64.713	64.552	64.895	-0.0095291					16	11	3	0	0	0	0.30093	1	16072	16072		21.537	3.1639	1	119480	+		58708	18641	33678	33679	71698	71698					0.040346278054357754
YLATGGVSLF	10	Unmodified	_YLATGGVSLF_					0	0	0			REV__ENSG00000162852|ENST00000366513|CNST	REV__ENSG00000162852|ENST00000366513|CNST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.25830078125	2	514.276575	1026.5386	0.28594	0.00014705	0.58172	0.00029916	0.86766	0.00044622	514.2767220296862	68.672	1.0697	68.744	68.484	69.554	0.071938					76	38	3	0	0	0	0.14015	1	17446	17446		39.957	9.3208	1	688610	+		58709	17016	33679	33680	71699	71699					0.026389382117031346
YLATGGVSLF	10	Unmodified	_YLATGGVSLF_					0	0	0			REV__ENSG00000162852|ENST00000366513|CNST	REV__ENSG00000162852|ENST00000366513|CNST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2766723632812	2	514.276575	1026.5386	0.22628	0.00011637	0.61865	0.00031816	0.84493	0.00043453	514.2766570448008	68.717	1.0888	68.698	68.429	69.518	-0.01915					87	38	3	0	0	0	0.15638	1	17429	17429		37.974	8.8924	1	720480	+		58710	17016	33679	33680	71700	71700					0.026389382117031346
YLATQSFLF	9	Unmodified	_YLATQSFLF_					0	0	0			REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6	REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7921142578125	2	545.2844	1088.55425	0.57946	0.00031597	-2.159	-0.0011773	-1.5795	-0.0008613	545.2833903305155	60.353	0.95727	60.448	60.019	60.976	0.095093					56	34	2	0	0	0	0.17611	1	14741	14741		34.102	5.6156	1	966640	+		58711	17815	33680	33681	71701	71701					0.013512247287508217
YLATQSFLF	9	Unmodified	_YLATQSFLF_					0	0	0			REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6	REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	545.2844	1088.55425	0.59997	0.00032716	-2.0582	-0.0011223	-1.4583	-0.00079517	545.7845996839314	60.495	0.78588	60.495	60.065	60.851	0	0.0028389	0.00016666	NaN	34.102	45	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1769200	+		58712	17815	33680	33681							0.013512247287508217
YLATQSFLF	9	Unmodified	_YLATQSFLF_					0	0	0			REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6	REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	545.2844	1088.55425	0.85525	0.00046635	-2.6318	-0.0014351	-1.7766	-0.00096873	545.2830458274124	60.543	0.75201	60.533	60.11	60.862	-0.0094566	0.041249	-0.00045886	NaN	34.102	47	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1434200	+		58713	17815	33680	33681							0.013512247287508217
YLAYLYPIF	9	Unmodified	_YLAYLYPIF_					0	0	0			REV__ENSG00000099219|ENST00000339450|ERMP1	REV__ENSG00000099219|ENST00000339450|ERMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.3007202148438	2	581.812793	1161.61103	0.29446	0.00017132	4.2452	0.0024699	4.5396	0.0026412	581.8147578404008	70.21	0.39129	70.276	70.16	70.552	0.066048					16	13	2	0	0	0	0.22431	1	17809	17809		20.871	7.3633	1	101800	+		58714	14124	33681	33682	71702	71702					0.03669272285264924
YLAYLYPIF	9	Unmodified	_YLAYLYPIF_					0	0	0			REV__ENSG00000099219|ENST00000339450|ERMP1	REV__ENSG00000099219|ENST00000339450|ERMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.3007202148438	2	581.812793	1161.61103	0.34013	0.00019789	3.8737	0.0022537	4.2138	0.0024516	581.8150299392319	70.363	0.33031	70.338	70.106	70.437	-0.024864					18	11	2	0	0	0	0.22431	1	17825	17825		20.871	6.2895	1	155780	+		58715	14124	33681	33682	71703	71703					0.03669272285264924
YLCEMCQY	8	Unmodified	_YLCEMCQY_					0	0	0		chr1:206053265-206056227|484|20.65|0.57|5.17|+|2|TE_info:Harlequin-int,Harlequin-int_dup70,ERV1,LTR,acceptor,+,206056227,206058429|RHEX,None|20;chr1:206053265-206056224|491|26.43|0.74|5.17|+|2|TE_info:Harlequin-int,Harlequin-int_dup70,ERV1,LTR,acceptor,+,206056224,206058429|RHEX,None|20;chr1:206053265-206056179|473|27.28|0.64|5.42|+|2|TE_info:Harlequin-int,Harlequin-int_dup70,ERV1,LTR,acceptor,+,206056179,206058429|RHEX,None|21	chr1:206053265-206056227|484|20.65|0.57|5.17|+|2|TE_info:Harlequin-int,Harlequin-int_dup70,ERV1,LTR,acceptor,+,206056227,206058429|RHEX,None|20	chr1:206053265-206056227|484|20.65|0.57|5.17|+|2|TE_info:Harlequin-int,Harlequin-int_dup70,ERV1,LTR,acceptor,+,206056227,206058429|RHEX,None|20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.812255859375	2	526.697931	1051.38131	0.60938	0.00032096	0.78167	0.0004117	1.3911	0.00073266	526.6983110153016	64.746	0.67904	64.746	64.539	65.218	0					68	24	5	0	0	0	0.34185	1	16093	16093		10.183	5.4274	1	749370			58716	111	33682	33683	71704	71704					-0.1423254898597861
YLCEMCQY	8	Unmodified	_YLCEMCQY_					0	0	0		chr1:206053265-206056227|484|20.65|0.57|5.17|+|2|TE_info:Harlequin-int,Harlequin-int_dup70,ERV1,LTR,acceptor,+,206056227,206058429|RHEX,None|20;chr1:206053265-206056224|491|26.43|0.74|5.17|+|2|TE_info:Harlequin-int,Harlequin-int_dup70,ERV1,LTR,acceptor,+,206056224,206058429|RHEX,None|20;chr1:206053265-206056179|473|27.28|0.64|5.42|+|2|TE_info:Harlequin-int,Harlequin-int_dup70,ERV1,LTR,acceptor,+,206056179,206058429|RHEX,None|21	chr1:206053265-206056227|484|20.65|0.57|5.17|+|2|TE_info:Harlequin-int,Harlequin-int_dup70,ERV1,LTR,acceptor,+,206056227,206058429|RHEX,None|20	chr1:206053265-206056227|484|20.65|0.57|5.17|+|2|TE_info:Harlequin-int,Harlequin-int_dup70,ERV1,LTR,acceptor,+,206056227,206058429|RHEX,None|20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.812744140625	2	526.697931	1051.38131	0.54402	0.00028654	0.70016	0.00036877	1.2442	0.00065531	526.6983130235119	64.774	0.52335	64.765	64.552	65.076	-0.0095291					53	18	4	0	0	0	0.34297	1	16089	16089		6.3541	0.59368	1	670750			58717	111	33682	33683	71705	71705					-0.1423254898597861
YLCMEVEIE	9	Unmodified	_YLCMEVEIE_					0	0	0			REV__nc|ENSG00000126216|Q96CW5-2|TUBGCP3	REV__nc|ENSG00000126216|Q96CW5-2|TUBGCP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.2654418945312	2	564.751218	1127.48788	0.34177	0.00019301	-1.4412	-0.0008139	-1.0994	-0.00062088	564.7503379202179	74.457	0.55575	74.51	74.176	74.732	0.052361					30	18	2	0	0	0	0.27532	1	19067	19067		12.532	4.376	1	463450	+		58718	22981	33683	33684	71706	71706					-0.07076095219827039
YLCMEVEIE	9	Unmodified	_YLCMEVEIE_					0	0	0			REV__nc|ENSG00000126216|Q96CW5-2|TUBGCP3	REV__nc|ENSG00000126216|Q96CW5-2|TUBGCP3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	564.751218	1127.48788	0.54409	0.00030728	-1.5157	-0.00085598	-0.97158	-0.0005487	564.7503042963676	74.488	0.53996	74.488	74.225	74.765	0	-0.0038459	-3.0299E-05	NaN	12.532	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	504680	+		58719	22981	33683	33684							-0.07076095219827039
YLCMEVEIE	9	Unmodified	_YLCMEVEIE_					0	0	0			REV__nc|ENSG00000126216|Q96CW5-2|TUBGCP3	REV__nc|ENSG00000126216|Q96CW5-2|TUBGCP3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	564.751218	1127.48788	0.34177	0.00019301	-1.4412	-0.0008139	-1.0994	-0.00062088	564.7503379202179	74.457	0.55575	74.51	74.176	74.732	0.052361	0.018499	5.3868E-05	NaN	12.532	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463450	+		58720	22981	33683	33684							-0.07076095219827039
YLCMEVEIE	9	Unmodified	_YLCMEVEIE_					0	0	0			REV__nc|ENSG00000126216|Q96CW5-2|TUBGCP3	REV__nc|ENSG00000126216|Q96CW5-2|TUBGCP3	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	564.751218	1127.48788	0.41338	0.00023345	-1.46	-0.00082456	-1.0467	-0.00059111	564.7504118823365	74.507	0.60238	74.477	74.211	74.813	-0.030663	-0.014654	3.2529E-05	NaN	12.532	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	396460	+		58721	22981	33683	33684							-0.07076095219827039
YLCNDTLIF	9	Unmodified	_YLCNDTLIF_					0	0	0			REV__ENSG00000105443|ENST00000452733|CYTH2;REV__ENST00000462927.5_1_22:37699411-37707619:+|nuORF	REV__ENSG00000105443|ENST00000452733|CYTH2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.3003540039062	2	551.267893	1100.52123	0.42568	0.00023467	-0.70908	-0.00039089	-0.2834	-0.00015623	551.2674123720805	71.435	0.50855	71.435	71.209	71.718	0					24	17	2	0	0	0	0.24542	1	18105	18105		14.582	0	1	422130	+		58722	14458;21241	33684	33685	71707	71707					-0.025007253856074385
YLCNDTLIF	9	Unmodified	_YLCNDTLIF_					0	0	0			REV__ENSG00000105443|ENST00000452733|CYTH2;REV__ENST00000462927.5_1_22:37699411-37707619:+|nuORF	REV__ENSG00000105443|ENST00000452733|CYTH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	551.267893	1100.52123	0.42176	0.0002325	-0.21647	-0.00011933	0.20529	0.00011317	551.2677398511605	71.478	0.46326	71.535	71.293	71.757	0.05658	0.047566	0.00030212	NaN	9.3474	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	274290	+		58723	14458;21241	33684	33685							-0.025007253856074385
YLCNDTLIF	9	Unmodified	_YLCNDTLIF_					0	0	0			REV__ENSG00000105443|ENST00000452733|CYTH2;REV__ENST00000462927.5_1_22:37699411-37707619:+|nuORF	REV__ENSG00000105443|ENST00000452733|CYTH2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	551.267893	1100.52123	0.4863	0.00026808	-0.59496	-0.00032799	-0.10866	-5.9902E-05	551.2677680432587	71.519	0.31473	71.492	71.288	71.602	-0.027275	0.0044267	-0.00011519	NaN	9.3474	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392580	+		58724	14458;21241	33684	33685							-0.025007253856074385
YLCSCPQDFE	10	Unmodified	_YLCSCPQDFE_					0	0	0		FBN3|p.V2412Afs*75|1|0.21|ENSG00000142449|chr19:8081458-8081459|GA/-|frameshift_variant;ENSG00000142449|ENST00000600128|FBN3	FBN3|p.V2412Afs*75|1|0.21|ENSG00000142449|chr19:8081458-8081459|GA/-|frameshift_variant	FBN3|p.V2412Afs*75|1|0.21|ENSG00000142449|chr19:8081458-8081459|GA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.2383422851562	2	602.736099	1203.45765	0.5871	0.00035387	0.34492	0.0002079	0.93202	0.00056176	602.7361282712574	76.837	0.36514	76.806	76.626	76.991	-0.031334					20	13	2	0	0	0	0.37925	1	19802	19802		7.2892	2.0586	1	82433			58725	4441	33685	33686	71708	71708					-0.1359445388502536
YLCSCPQDFE	10	Unmodified	_YLCSCPQDFE_					0	0	0		FBN3|p.V2412Afs*75|1|0.21|ENSG00000142449|chr19:8081458-8081459|GA/-|frameshift_variant;ENSG00000142449|ENST00000600128|FBN3	FBN3|p.V2412Afs*75|1|0.21|ENSG00000142449|chr19:8081458-8081459|GA/-|frameshift_variant	FBN3|p.V2412Afs*75|1|0.21|ENSG00000142449|chr19:8081458-8081459|GA/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	602.736099	1203.45765	0.40537	0.00024433	0.15418	9.2932E-05	0.55956	0.00033726	602.7359639176506	76.78	0.25464	76.833	76.665	76.92	0.053413	0.01346	-0.00019425	NaN	7.2892	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99462			58726	4441	33685	33686							-0.1359445388502536
YLCSCPQDFE	10	Unmodified	_YLCSCPQDFE_					0	0	0		FBN3|p.V2412Afs*75|1|0.21|ENSG00000142449|chr19:8081458-8081459|GA/-|frameshift_variant;ENSG00000142449|ENST00000600128|FBN3	FBN3|p.V2412Afs*75|1|0.21|ENSG00000142449|chr19:8081458-8081459|GA/-|frameshift_variant	FBN3|p.V2412Afs*75|1|0.21|ENSG00000142449|chr19:8081458-8081459|GA/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	602.736099	1203.45765	0.5871	0.00035387	0.34492	0.0002079	0.93202	0.00056176	602.7361282712574	76.837	0.36514	76.806	76.626	76.991	-0.031334	-0.01346	3.5686E-05	NaN	7.2892	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82433			58727	4441	33685	33686							-0.1359445388502536
YLCSGGMMNLI	11	Unmodified	_YLCSGGMMNLI_					0	0	0		ENST00000604849.1_2_X:53172048-53172363:+|nuORF	ENST00000604849.1_2_X:53172048-53172363:+|nuORF	ENST00000604849.1_2_X:53172048-53172363:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.2586059570312	2	601.274338	1200.53412	0.17376	0.00010447	0.56861	0.00034189	0.74236	0.00044636	601.2747687092963	67.089	0.34154	67.073	66.921	67.262	-0.016304					20	11	3	0	0	0	0.36943	1	16821	16821		15.248	3.0078	1	108120			58728	12284	33686	33687	71709	71709					-0.05812353589340091
YLCTLLGNV	9	Unmodified	_YLCTLLGNV_					0	0	0		nc|ENSG00000186268|Q8NGN7|OR10D4P	nc|ENSG00000186268|Q8NGN7|OR10D4P	nc|ENSG00000186268|Q8NGN7|OR10D4P	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7738952636719	2	498.265153	994.515753	0.69316	0.00034538	-2.7061	-0.0013483	-2.0129	-0.001003	498.2639088547651	78.836	0.38106	78.806	78.601	78.982	-0.030434					24	15	2	0	0	0	0.25314	1	20431	20431		15.847	0.078963	1	162300			58729	12884	33687	33688	71710	71710					0.018275958225899558
YLCVCVVA	8	Unmodified	_YLCVCVVA_					0	0	0		ENST00000464356.6_2_1:156435368-156435647:-|nuORF	ENST00000464356.6_2_1:156435368-156435647:-|nuORF	ENST00000464356.6_2_1:156435368-156435647:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.8821716308594	2	435.216617	868.418682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.14	1	13.04	12.54	13.54	-0.099291								0	0	0	0.37992	1	337	337		0.79363	0	1				58730	10783	33688	33689	71711	71711					-0.020790896580592744
YLCVDHCFP	9	Unmodified	_YLCVDHCFP_					0	0	0		ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000141279|P55786-2|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;ENST00000525021.1_1_17:45664518-45669341:+|nuORF;ENST00000533538.5_1_17:45664518-45669919:+|nuORF	ENSG00000141279|ENST00000322157|NPEPPS	ENSG00000141279|ENST00000322157|NPEPPS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.27001953125	2	548.733163	1095.45177	1.1151	0.00061187	2.7786	0.0015247	3.8937	0.0021366	548.7349646585973	50.46	0.58019	50.505	50.318	50.898	0.044891					37	20	3	0	0	0	0.25291	1	11690	11690		9.3474	1.4373	1	319280			58731	4363	33689	33690	71712	71712					-0.09213507606023086
YLDAVRDGCP	10	Unmodified	_YLDAVRDGCP_					0	0	0		nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1;TENM1|p.I1404Ffs*16|1|0.26|ENSG00000009694|chrX:124422513-124422513|G/-|frameshift_variant	nc|ENSG00000009694|Q9UKZ4-2|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.2793579101562	2	554.758223	1107.50189	0.48563	0.0002694	-3.5264	-0.0019563	-3.0407	-0.0016869	554.7570456565433	77.16	0.42269	77.215	77.06	77.482	0.05542					32	14	3	0	0	0	0.24359	1	19937	19937		38.176	13.502	1	146160			58732	408	33690	33691	71713	71713					-0.04755681676488166
YLDEFANLL	9	Unmodified	_YLDEFANLL_					0	0	0		ENSG00000158683|ENST00000289672|PKD1L1	ENSG00000158683|ENST00000289672|PKD1L1	ENSG00000158683|ENST00000289672|PKD1L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7596435546875	2	549.279315	1096.54408	0.80434	0.00044181	-2.5874	-0.0014212	-1.7831	-0.0009794	549.778010044351	78.327	0.52514	78.327	78.12	78.645	0					30	19	2	0	0	0	0.22188	1	20310	20310		20.454	2.3186	1	240120			58733	5368	33691	33692	71714	71714					-0.0003338299648021348
YLDELSLHFG	10	Unmodified	_YLDELSLHFG_					0	0	0			REV__nc|nan|A6NN90|C2orf81	REV__nc|nan|A6NN90|C2orf81	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.3214111328125	2	597.295496	1192.57644	0.34303	0.00020489	-0.97854	-0.00058448	-0.63551	-0.00037958	597.2949958259251	69.895	0.26434	69.872	69.673	69.937	-0.022087					14	9	2	0	0	0	0.31629	1	17664	17664		10.074	5.3179	1	120720	+		58734	19374	33692	33693	71715	71715					-0.012145955935011443
YLDFLHTV	8	Unmodified	_YLDFLHTV_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2803955078125	2	504.263468	1006.51238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.966	1	96.96	96.46	97.46	-0.0055466								0	0	0	0.37078	1	25945	25945		5.2307	0	1				58735	1468	33693	33694	71716	71716					0.00938669040226614
YLDGGECFGMV	11	Unmodified	_YLDGGECFGMV_					0	0	0			REV__ENSG00000114904|ENST00000233027|NEK4	REV__ENSG00000114904|ENST00000233027|NEK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.33154296875	2	595.746467	1189.47838	0.51946	0.00030947	-0.82386	-0.00049081	-0.3044	-0.00018134	595.7464602280355	72.531	2.142	72.502	71.656	73.798	-0.029305					96	77	2	0	0	0	0.32843	1	18825	18825		10.074	3.3508	1	332850	+		58736	14853	33694	33695	71717	71717					-0.10877863505334062
YLDKEDTFF	9	Unmodified	_YLDKEDTFF_					0	0	0		nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.7646484375	2	589.274229	1176.53391	0.27181	0.00016017	2.0956	0.0012349	2.3674	0.0013951	589.2754671601808	76.725	0.59038	76.778	76.665	77.256	0.053413					23	20	2	0	0	0	0.19747	1	19851	19851		24.021	3.5669	1	97068			58737	727	33695	33696	71718	71718					-0.04729990721739341
YLDKLTEL	8	Unmodified	_YLDKLTEL_					0	0	0			REV__ENST00000380393.7_1_20:2844875-2903853:+|nuORF	REV__ENST00000380393.7_1_20:2844875-2903853:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.8040466308594	2	497.776408	993.538263	0.61574	0.0003065	-0.35166	-0.00017505	0.26408	0.00013145	497.7753652904583	76.925	0.34602	76.893	76.754	77.1	-0.031334					18	12	2	0	0	0	0.34247	1	19846	19846		8.5933	0	1	83586	+		58738	19078	33696	33697	71719	71719					0.041235184918377854
YLDLIELEF	9	Unmodified	_YLDLIELEF_					0	0	0			REV__nc|ENSG00000165699|Q92574-2|TSC1	REV__nc|ENSG00000165699|Q92574-2|TSC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.7908935546875	2	577.802623	1153.59069	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.838	1	58.93	58.43	59.43	0.091301								0	0	0	0.23091	1	14285	14285		12.532	0	1		+		58739	17258	33697	33698	71720	71720					0.02004056834812218
YLDLILAILAL	11	Unmodified	_YLDLILAILAL_					0	0	0		nc|ENSG00000170088|Q8IY95-2|TMEM192;ENSG00000170088|ENST00000306480|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.2574157714844	3	410.928447	1229.76351	0.15633	6.4239E-05	2.1986	0.00090349	2.355	0.00096772	411.26415266966717	85.4	0.77525	85.4	85.015	85.791	0					47	29	2	0	0	0	0.33296	1	22329	22329		2.6312	0.54523	1	425610			58740	6422	33698	33699	71721	71721					0.15782047962056822
YLDLLSWSP	9	Unmodified	_YLDLLSWSP_					0	0	0			REV__nc|ENSG00000114646|O95196-3|CSPG5	REV__nc|ENSG00000114646|O95196-3|CSPG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.8367919921875	2	547.281857	1092.54916	0.63381	0.00034687	-0.11331	-6.201E-05	0.52051	0.00028486	547.2814002181466	71.912	0.57026	71.969	71.654	72.224	0.056572					27	20	2	0	0	0	0.19839	1	18316	18316		21.747	0	1	114950	+		58741	14840	33699	33700	71722	71722					0.006589208661580415
YLDLSSNNL	9	Unmodified	_YLDLSSNNL_					0	0	0		ENSG00000162763|ENST00000294818|LRRC52;nc|ENSG00000174348|Q7Z5L7-4|PODN;ENSG00000174348|ENST00000312553|PODN;nc|ENSG00000174348|Q7Z5L7-2|PODN;nc|ENSG00000174348|Q7Z5L7-3|PODN	ENSG00000162763|ENST00000294818|LRRC52	ENSG00000162763|ENST00000294818|LRRC52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.27587890625	2	519.758746	1037.50294	0.42567	0.00022124	-1.3368	-0.0006948	-0.91111	-0.00047356	520.2603521151243	82.217	0.85503	82.193	81.984	82.839	-0.02404					50	32	2	0	0	0	0.22935	1	21499	21499		19.362	1.227	1	595410			58742	5613	33700	33701	71723	71723					-0.014311440359506378
YLDLYELQ	8	Unmodified	_YLDLYELQ_					0	0	0			REV__ENSG00000117448|ENST00000351829|AKR1A1	REV__ENSG00000117448|ENST00000351829|AKR1A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	529.3004150390625	2	528.76604	1055.51753	0.2856	0.00015101	-4.2317	-0.0022376	-3.9461	-0.0020866	528.7632868612556	52.129	0.40242	52.128	51.902	52.305	-0.00080872					24	14	3	0	0	0	0.30241	1	12241	12241		19.257	2.6911	1	205920	+		58743	14968	33701	33702	71724	71724					-0.00801071887804028
YLDNLVRIF	9	Unmodified	_YLDNLVRIF_					0	0	0			REV__ENSG00000196233|ENST00000421806|LCOR	REV__ENSG00000196233|ENST00000421806|LCOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.7378540039062	2	576.824224	1151.63389	0.32624	0.00018818	-0.35848	-0.00020678	-0.032241	-1.8597E-05	576.824500314035	63.564	0.6591	63.564	63.256	63.915	0					34	23	2	0	0	0	0.23784	1	15759	15759		19.257	0	1	236810	+		58744	18633	33702	33703	71725	71725					0.06414291402734307
YLDNVYPEM	9	Unmodified	_YLDNVYPEM_					0	0	0		ENSG00000178234|ENST00000430044|GALNT11;ENST00000491061.1_1_7:151805139-151814490:+|nuORF	ENSG00000178234|ENST00000430044|GALNT11;ENST00000491061.1_1_7:151805139-151814490:+|nuORF	ENSG00000178234|ENST00000430044|GALNT11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2906494140625	2	572.254982	1142.49541	0.27891	0.00015961	-2.3693	-0.0013559	-2.0904	-0.0011962	572.2536695587237	68.906	0.38779	68.906	68.786	69.174	0					18	13	2	0	0	0	0.24289	1	17434	17434		18.146	2.8979	1	119260			58745	7047;11171	33703	33704	71726	71726					-0.0701361962790088
YLDNVYPEM	9	Unmodified	_YLDNVYPEM_					0	0	0		ENSG00000178234|ENST00000430044|GALNT11;ENST00000491061.1_1_7:151805139-151814490:+|nuORF	ENSG00000178234|ENST00000430044|GALNT11;ENST00000491061.1_1_7:151805139-151814490:+|nuORF	ENSG00000178234|ENST00000430044|GALNT11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2901000976562	2	572.254982	1142.49541	0.25271	0.00014462	-2.1798	-0.0012474	-1.9271	-0.0011028	572.2538584581886	68.937	0.30943	68.918	68.816	69.126	-0.01915					16	10	2	0	0	0	0.24688	1	17413	17413		14.838	1.7958	1	146100			58746	7047;11171	33703	33704	71727	71727					-0.0701361962790088
YLDPQAKLF	9	Unmodified	_YLDPQAKLF_					0	0	0		ENSG00000185974|ENST00000335678|GRK1	ENSG00000185974|ENST00000335678|GRK1	ENSG00000185974|ENST00000335678|GRK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3077392578125	2	547.797675	1093.5808	0.40406	0.00022134	-3.7776	-0.0020693	-3.3735	-0.001848	548.2955327559779	81.255	0.94798	81.255	80.946	81.894	0					56	41	2	0	0	0	0.2451	1	21346	21346		15.847	0	1	100410			58747	7576	33704	33705	71728	71728					0.03774913620077314
YLDPQAKLF	9	Unmodified	_YLDPQAKLF_					0	0	0		ENSG00000185974|ENST00000335678|GRK1	ENSG00000185974|ENST00000335678|GRK1	ENSG00000185974|ENST00000335678|GRK1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	547.797675	1093.5808	0.27385	0.00015001	-2.4912	-0.0013647	-2.2174	-0.0012147	547.7979511655587	81.076	0.41762	81.141	80.946	81.364	0.065102	-0.056975	0.00083476	NaN	15.847	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88592			58748	7576	33704	33705							0.03774913620077314
YLDQFLHF	8	Unmodified	_YLDQFLHF_					0	0	0		nc|ENSG00000089127|P00973-3|OAS1;ENST00000540589.2_1_12:113357336-113369724:+|nuORF	nc|ENSG00000089127|P00973-3|OAS1	nc|ENSG00000089127|P00973-3|OAS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7875366210938	2	541.768917	1081.52328	0.57408	0.00031102	2.8315	0.001534	3.4056	0.0018451	542.2702809606773	89.777	0.204	89.868	89.717	89.921	0.090569					19	16	2	0	0	0	0.41097	1	23754	23754		18.135	1.9859	1	53144			58749	12603	33705	33706	71729	71729					-0.014219285855006092
YLDRMDILK	9	Unmodified	_YLDRMDILK_					0	0	0			REV__KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	REV__KIF13A|p.S1698Yfs*5|1|0.23|ENSG00000137177|chr6:17764435-17764435|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2900390625	2	583.815541	1165.61653	0.30045	0.00017541	0.25894	0.00015117	0.55939	0.00032658	583.8158578235259	66.945	0.53245	66.945	66.717	67.25	0					38	18	3	0	0	0	0.24471	1	16744	16744		17.113	0	1	259690	+		58750	15848	33706	33707	71730	71730					0.040346278054357754
YLDSLGFSIY	10	Unmodified	_YLDSLGFSIY_					0	0	0			REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	REV__nc|ENSG00000107882|Q9UMX1-2|SUFU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.2737426757812	2	589.292422	1176.57029	0.4665	0.0002749	-0.34904	-0.00020569	0.11746	6.9219E-05	589.2920445942815	66.618	0.6478	66.618	66.317	66.964	0					64	22	4	0	0	0	0.30958	1	16626	16626		19.257	1.1106	1	1379100	+		58751	14571	33707	33708	71731	71731					-0.010931138249816286
YLDVAEAFLD	10	Unmodified	_YLDVAEAFLD_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.8140869140625	2	578.282054	1154.54956	0.43039	0.00024889	1.1449	0.00066206	1.5753	0.00091095	578.280512149171	75.5	0.2077	75.469	75.318	75.525	-0.031479					9	7	2	0	0	0	0.31358	1	19343	19343		13.906	7.5519	1	74000			58752	2857	33708	33709	71732	71732					-0.02153704204670248
YLDVEGNSI	9	Unmodified	_YLDVEGNSI_					0	0	0		nc|ENSG00000060718|P12107-4|COL11A1;nc|ENSG00000060718|P12107-3|COL11A1;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	nc|ENSG00000060718|P12107-4|COL11A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2772216796875	2	505.245472	1008.47639	0.16218	8.1941E-05	-3.7804	-0.00191	-3.6182	-0.0018281	505.24422711538017	49.157	0.5641	49.189	48.904	49.468	0.032043					38	19	3	0	0	0	0.24688	1	11259	11259		6.2058	0	1	261990			58753	752	33709	33710	71733	71733					-0.027508329272677656
YLDVRCCCE	9	Unmodified	_YLDVRCCCE_					0	0	0			REV__ENST00000467549.5_1_3:78987852-78987978:-|nuORF	REV__ENST00000467549.5_1_3:78987852-78987978:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.8057861328125	2	552.219562	1102.42457	0.25734	0.00014211	-4.3247	-0.0023882	-4.0673	-0.0022461	552.7193393680915	64.97	0.31924	64.97	64.781	65.1	0					16	11	2	0	0	0	0.25202	1	16132	16132		10.824	2.9138	1	135910	+		58754	21302	33710	33711	71734	71734					-0.1225435920871405
YLDYLDLI	8	Unmodified	_YLDYLDLI_					0	0	0		nc|ENSG00000170262|Q8TCY5-2|MRAP;ENSG00000170262|ENST00000303645|MRAP;nc|ENSG00000170262|Q8TCY5-1|MRAP	nc|ENSG00000170262|Q8TCY5-2|MRAP	nc|ENSG00000170262|Q8TCY5-2|MRAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7451782226562	2	514.270958	1026.52736	0.27064	0.00013918	-2.5849	-0.0013293	-2.3143	-0.0011902	514.7706081024401	68.588	0.28166	68.569	68.37	68.652	-0.019157					17	9	3	0	0	0	0.31375	1	17292	17292		26.341	6.9023	1	309570			58755	6435	33711	33712	71735	71735					0.015161161175683446
YLDYQQWGY	9	Unmodified	_YLDYQQWGY_					0	0	0		ENST00000366663.9_1_1:230974343-230974889:-|nuORF	ENST00000366663.9_1_1:230974343-230974889:-|nuORF	ENST00000366663.9_1_1:230974343-230974889:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.8637084960938	2	618.272021	1234.52949	-0.012985	-8.028E-06	-2.315	-0.0014313	-2.328	-0.0014393	618.2704894208644	53.61	0.30915	53.666	53.56	53.869	0.056255					17	11	2	0	0	0	0.2524	1	12727	12727		11.64	1.5664	1	246020			58756	9708	33712	33713	71736	71736					-0.0783945514460811
YLECRVEGGSF	11	Unmodified	_YLECRVEGGSF_					0	0	0		nc|ENSG00000100614|P35813-2|PPM1A	nc|ENSG00000100614|P35813-2|PPM1A	nc|ENSG00000100614|P35813-2|PPM1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.7924194335938	2	630.289888	1258.56522	0.44264	0.00027899	0.72451	0.00045665	1.1671	0.00073564	630.290311372531	78.708	0.56071	78.766	78.528	79.089	0.058151					48	22	3	0	0	0	0.39802	1	20385	20385		11.495	0.6952	1	180270			58757	12617	33713	33714	71737	71737					-0.05371740959276394
YLECRVEGGSF	11	Unmodified	_YLECRVEGGSF_					0	0	0		nc|ENSG00000100614|P35813-2|PPM1A	nc|ENSG00000100614|P35813-2|PPM1A	nc|ENSG00000100614|P35813-2|PPM1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	630.289888	1258.56522	0.63832	0.00040232	0.25134	0.00015842	0.88966	0.00056074	630.289400740434	78.743	0.54663	78.743	78.511	79.057	0	-0.016619	-0.00038116	NaN	11.495	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220840			58758	12617	33713	33714							-0.05371740959276394
YLECRVEGGSF	11	Unmodified	_YLECRVEGGSF_					0	0	0		nc|ENSG00000100614|P35813-2|PPM1A	nc|ENSG00000100614|P35813-2|PPM1A	nc|ENSG00000100614|P35813-2|PPM1A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	630.289888	1258.56522	0.44264	0.00027899	0.72451	0.00045665	1.1671	0.00073564	630.290311372531	78.708	0.56071	78.766	78.528	79.089	0.058151	0.0063794	0.0002153	NaN	11.495	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180270			58759	12617	33713	33714							-0.05371740959276394
YLECRVEGGSF	11	Unmodified	_YLECRVEGGSF_					0	0	0		nc|ENSG00000100614|P35813-2|PPM1A	nc|ENSG00000100614|P35813-2|PPM1A	nc|ENSG00000100614|P35813-2|PPM1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	630.289888	1258.56522	0.68493	0.0004317	0.52561	0.00033128	1.2105	0.00076299	630.2901705408186	78.8	0.49656	78.77	78.552	79.048	-0.030434	0.01024	-3.5427E-05	NaN	11.495	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236660			58760	12617	33713	33714							-0.05371740959276394
YLEDEEEEA	9	Unmodified	_YLEDEEEEA_					0	0	0			REV__nc|ENSG00000143384|Q07820-2|MCL1	REV__nc|ENSG00000143384|Q07820-2|MCL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.3367919921875	2	563.724766	1125.43498	0.41746	0.00023534	-0.23755	-0.00013391	0.17991	0.00010142	563.7244869922497	49.533	1.4995	49.578	49.102	50.602	0.044891					72	55	2	0	0	0	0.25417	1	11311	11311		8.5933	0	1	239380	+		58761	16173	33714	33715	71738	71738					-0.12272058477242354
YLEDQIVQL	9	Unmodified	_YLEDQIVQL_					0	0	0		nc|ENSG00000147127|Q5JT25-2|RAB41;ENSG00000147127|ENST00000374473|RAB41	nc|ENSG00000147127|Q5JT25-2|RAB41	nc|ENSG00000147127|Q5JT25-2|RAB41	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7978515625	2	560.797872	1119.58119	0.068665	3.8507E-05	0.89861	0.00050394	0.96728	0.00054245	560.7977453486652	67.072	0.43658	67.056	66.921	67.357	-0.016296					23	14	2	0	0	0	0.17277	1	16828	16828		27.629	2.2295	1	226500			58762	4747	33715	33716	71739	71739					0.02618288549274439
YLEEERPF	8	Unmodified	_YLEEERPF_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2792358398438	2	541.761289	1081.50803	0.33494	0.00018146	1.8028	0.00097668	2.1377	0.0011581	541.7623169880326	76.623	0.65981	76.676	76.32	76.98	0.053413					50	20	4	0	0	0	0.34039	1	19817	19817		15.847	2.3393	1	320600			58763	5779	33716	33717	71740	71740					-0.02946840173331111
YLEEERPF	8	Unmodified	_YLEEERPF_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2793579101562	2	541.761289	1081.50803	0.73574	0.0003986	1.6367	0.00088669	2.3724	0.0012853	541.7620518846826	76.687	0.58954	76.656	76.37	76.96	-0.031487					46	21	3	0	0	0	0.31934	1	19830	19830		24.674	0	1	335700			58764	5779	33716	33717	71741	71741					-0.02946840173331111
YLEEMVNSL	9	Unmodified	_YLEEMVNSL_					0	0	0		nc|ENSG00000177030|O75398-5|DEAF1;nc|ENSG00000177030|O75398-4|DEAF1;nc|ENSG00000177030|O75398-3|DEAF1;ENSG00000177030|ENST00000382409|DEAF1	nc|ENSG00000177030|O75398-5|DEAF1	nc|ENSG00000177030|O75398-5|DEAF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.7770385742188	2	549.262807	1096.51106	0.64915	0.00035655	-0.34584	-0.00018996	0.30331	0.0001666	549.2626277200359	45.559	0.81892	45.618	45.253	46.072	0.059834					64	28	3	0	0	0	0.17787	1	10110	10110		26.884	7.6267	1	801400			58765	6957	33717	33718	71742	71742					-0.03333333110822423
YLEESQEMF	9	Unmodified	_YLEESQEMF_					0	0	0			REV__nc|ENSG00000180098|Q9NX07-2|TRNAU1AP	REV__nc|ENSG00000180098|Q9NX07-2|TRNAU1AP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.25	2	588.249897	1174.48524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.103	1	61.2	60.7	61.7	0.096985								0	0	0	0.24715	1	14981	14981		7.2892	0	1		+		58766	18102	33718	33719	71743	71743					-0.09502227353118542
YLEGEAVRL	9	Unmodified	_YLEGEAVRL_					0	0	0		nc|ENSG00000064933|P54277-4|PMS1;nc|ENSG00000064933|P54277-2|PMS1;nc|ENSG00000064933|P54277-3|PMS1;ENSG00000064933|ENST00000441310|PMS1	nc|ENSG00000064933|P54277-4|PMS1	nc|ENSG00000064933|P54277-4|PMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2848510742188	2	525.284931	1048.55531	0.54103	0.00028419	-0.245	-0.0001287	0.29603	0.0001555	525.2845929524449	63.222	0.52052	63.222	63.011	63.532	0					40	18	3	0	0	0	0.088391	1	15655	15655		39.957	14.558	1	524790			58767	799	33719	33720	71744	71744					0.032974390976505674
YLEGEAVRL	9	Unmodified	_YLEGEAVRL_					0	0	0		nc|ENSG00000064933|P54277-4|PMS1;nc|ENSG00000064933|P54277-2|PMS1;nc|ENSG00000064933|P54277-3|PMS1;ENSG00000064933|ENST00000441310|PMS1	nc|ENSG00000064933|P54277-4|PMS1	nc|ENSG00000064933|P54277-4|PMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.2847900390625	2	525.284931	1048.55531	0.54427	0.0002859	-0.11119	-5.8405E-05	0.43308	0.00022749	525.28488130771	63.125	0.55408	63.221	62.985	63.539	0.095722					41	19	3	0	0	0	0.14076	1	15604	15604		32.305	3.2239	1	497860			58768	799	33719	33720	71745	71745					0.032974390976505674
YLEGEAVRL	9	Unmodified	_YLEGEAVRL_					0	0	0		nc|ENSG00000064933|P54277-4|PMS1;nc|ENSG00000064933|P54277-2|PMS1;nc|ENSG00000064933|P54277-3|PMS1;ENSG00000064933|ENST00000441310|PMS1	nc|ENSG00000064933|P54277-4|PMS1	nc|ENSG00000064933|P54277-4|PMS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2847900390625	2	525.284931	1048.55531	0.54209	0.00028475	-0.48402	-0.00025425	0.058063	3.05E-05	525.2848849282851	63.172	0.69585	63.164	62.963	63.659	-0.0085526					43	24	3	0	0	0	0.088391	1	15637	15637		39.957	14.558	1	540670			58769	799	33719	33720	71746	71746					0.032974390976505674
YLEGLTTSL	9	Unmodified	_YLEGLTTSL_					0	0	0		nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;TRIOBP|p.I1114Tfs*97|1|0.26|ENSG00000100106|chr22:37725894-37725900|GTATTGG/-|frameshift_variant	nc|ENSG00000100106|Q9H2D6-2|TRIOBP	nc|ENSG00000100106|Q9H2D6-2|TRIOBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.7662658691406	2	498.76604	995.517527	0.51936	0.00025904	0.07654	3.8176E-05	0.5959	0.00029721	498.765905914812	63.632	0.66651	63.623	63.379	64.045	-0.0085526					57	23	4	0	0	0	0.0007571	1	15793	15793		104.8	12.308	1	944100			58770	1534	33720	33721	71747	71747					0.01958928112196645
YLEGRNLIT	9	Unmodified	_YLEGRNLIT_					0	0	0		ENSG00000266028|ENST00000573034|SRGAP2	ENSG00000266028|ENST00000573034|SRGAP2	ENSG00000266028|ENST00000573034|SRGAP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.8145751953125	2	539.798206	1077.58186	0.62551	0.00033765	1.2396	0.00066911	1.8651	0.0010068	540.3007072981771	88.379	0.5745	88.379	88.098	88.672	0					47	31	2	0	0	0	0.23775	1	23301	23301		18.135	0	1	56384			58771	8674	33721	33722	71748	71748					0.046171279889904326
YLEGSCKDCI	10	Unmodified	_YLEGSCKDCI_					0	0	0		nc|ENSG00000112029|Q9UKT4-2|FBXO5;ENSG00000112029|ENST00000229758|FBXO5	nc|ENSG00000112029|Q9UKT4-2|FBXO5	nc|ENSG00000112029|Q9UKT4-2|FBXO5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.7470092773438	2	565.746467	1129.47838	0.38862	0.00021986	-0.24094	-0.00013631	0.14768	8.3549E-05	565.7464840163095	57.992	0.47922	57.975	57.821	58.3	-0.0172					30	17	2	0	0	0	0.22916	1	14039	14039		29.082	2.8134	1	299320			58772	2406	33722	33723	71749	71749					-0.08117863505344758
YLEGSCKDCI	10	Unmodified	_YLEGSCKDCI_					0	0	0		nc|ENSG00000112029|Q9UKT4-2|FBXO5;ENSG00000112029|ENST00000229758|FBXO5	nc|ENSG00000112029|Q9UKT4-2|FBXO5	nc|ENSG00000112029|Q9UKT4-2|FBXO5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	565.746467	1129.47838	0.40853	0.00023113	-0.29411	-0.00016639	0.11442	6.4733E-05	565.7463906990971	57.83	0.56529	57.916	57.686	58.252	0.085621	-0.042322	-4.4891E-06	NaN	29.082	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310780			58773	2406	33722	33723							-0.08117863505344758
YLEKAVQW	8	Unmodified	_YLEKAVQW_					0	0	0			REV__nc|ENSG00000114346|Q9H8V3-2|ECT2	REV__nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3170776367188	2	518.776742	1035.53893	0.37616	0.00019515	0.58654	0.00030428	0.96271	0.00049943	518.7767293557124	76.57	0.64664	76.57	76.31	76.957	0					41	23	2	0	0	0	0.32435	1	19831	19831		23.148	3.8914	1	237950	+		58774	14831	33723	33724	71750	71750					0.022583579315551106
YLELVKSLC	9	Unmodified	_YLELVKSLC_					0	0	0		nc|ENSG00000143252|Q99643-5|SDHC;nc|ENSG00000143252|Q99643-3|SDHC;ENSG00000143252|ENST00000367975|SDHC	nc|ENSG00000143252|Q99643-5|SDHC	nc|ENSG00000143252|Q99643-5|SDHC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7843017578125	2	534.293911	1066.57327	0.63721	0.00034046	0.12389	6.6195E-05	0.7611	0.00040665	534.2940788637019	77.632	3.4543	77.688	76.982	80.436	0.055412					297	133	5	0	0	0	0.20344	1	20617	20617		23.148	6.0355	1	4452200			58775	4494	33724	33725	71751	71751					0.042644380281672056
YLEQVRMGI	9	Unmodified	_YLEQVRMGI_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.8131713867188	2	554.794609	1107.57467	0.38441	0.00021327	3.5931	0.0019934	3.9775	0.0022067	554.7972777907673	59.227	0.90632	59.213	59.031	59.937	-0.014267					62	31	3	0	0	0	0.088443	1	14556	14556		39.95	5.0176	1	308200			58776	1336	33725	33726	71752	71752					0.025180721169363096
YLEQVRMGI	9	Unmodified	_YLEQVRMGI_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	554.794609	1107.57467	0.22895	0.00012702	3.6294	0.0020136	3.8583	0.0021406	554.7970979965174	59.339	0.50554	59.339	59.055	59.56	0	0.085001	-0.0011092	NaN	39.95	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267550			58777	1336	33725	33726							0.025180721169363096
YLEQVRMGI	9	Unmodified	_YLEQVRMGI_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	554.794609	1107.57467	0.30951	0.00017172	6.0005	0.003329	6.31	0.0035008	554.7976605610767	59.118	0.61687	59.209	58.983	59.6	0.091301	-0.044364	0.0015218	NaN	39.95	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173820			58778	1336	33725	33726							0.025180721169363096
YLFAPISI	8	Unmodified	_YLFAPISI_					0	0	0			REV__ENSG00000205301|ENST00000511113|MGAT4D	REV__ENSG00000205301|ENST00000511113|MGAT4D	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	463.283203125	2	462.265479	922.516405	0.14182	6.5558E-05	1.3226	0.0006114	1.4644	0.00067695	462.2664863103895	88.736	0.92242	88.736	88.487	89.41	0					104	41	4	0	0	0	0.42758	1	23527	23527		13.508	0	1	1216900	+		58779	18985	33726	33727	71753	71753					0.052047585339551006
YLFHFLQKQ	9	Unmodified	_YLFHFLQKQ_					0	0	0		ENST00000588736.1_1_17:74041371-74044231:-|nuORF	ENST00000588736.1_1_17:74041371-74044231:-|nuORF	ENST00000588736.1_1_17:74041371-74044231:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.5567932128906	3	408.557236	1222.64988	0.017072	6.9748E-06	-0.84769	-0.00034633	-0.83061	-0.00033935	408.5568632583273	21.691	0.68264	21.642	21.29	21.972	-0.049377					53	24	3	0	0	0	0.35116	1	2923	2923		1.1933	0.12188	1	255950			58780	12149	33727	33728	71754	71754					0.04745997639656707
YLFHSRPHFV	10	Unmodified	_YLFHSRPHFV_					0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.7803039550781	3	434.896252	1301.66693	-0.1661	-7.2237E-05	0.86135	0.0003746	0.69525	0.00030236	434.89658570741693	34.247	0.61201	34.247	33.916	34.528	0					32	21	2	0	0	0	0.31942	1	6705	6705		3.5871	1.6807	1	168610	+		58781	15645	33728	33729	71755	71755					0.02815918245460125
YLFIHLML	8	Unmodified	_YLFIHLML_					0	0	0			REV__Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|228|3|anti-sense	REV__Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|228|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.764404296875	2	525.296256	1048.57796	0.74775	0.00039279	1.6843	0.00088474	2.432	0.0012775	525.2972087863291	53.841	0.48788	53.841	53.648	54.136	0					27	17	3	0	0	0	0.31651	1	12807	12807		24.21	0	1	222130	+		58782	22701	33729	33730	71756	71756					0.05561366961569547
YLFIHLML	8	Unmodified	_YLFIHLML_					0	0	0			REV__Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|228|3|anti-sense	REV__Harlequin-int_dup159|chr4:69053326-69056858:+|12.568162514976615|0.4897717427831806|4.68|542.0|228|3|anti-sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	525.296256	1048.57796	0.63845	0.00033537	1.9411	0.0010197	2.5795	0.001355	525.2974263733998	53.9	0.37865	53.89	53.771	54.149	-0.0096054	0.024748	0.00011791	NaN	24.21	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317060	+		58783	22701	33729	33730							0.05561366961569547
YLFISPESF	9	Unmodified	_YLFISPESF_					0	0	0			REV__ENST00000520372.5_1_1:26655223-26662846:-|nuORF	REV__ENST00000520372.5_1_1:26655223-26662846:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.77685546875	2	551.776408	1101.53826	0.64495	0.00035587	0.71546	0.00039477	1.3604	0.00075064	551.7764440035703	84.51	0.63268	84.591	84.303	84.935	0.080879					59	24	3	0	0	0	0.055495	1	22161	22161		50.855	2.5092	1	385670	+		58784	17920	33730	33731	71757	71757					-0.008444815081475099
YLFISPESF	9	Unmodified	_YLFISPESF_					0	0	0			REV__ENST00000520372.5_1_1:26655223-26662846:-|nuORF	REV__ENST00000520372.5_1_1:26655223-26662846:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	551.776408	1101.53826	0.60136	0.00033182	0.88357	0.00048754	1.4849	0.00081935	551.7765880628318	84.608	0.62541	84.608	84.346	84.972	0	0.018745	7.5811E-05	NaN	50.855	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383380	+		58785	17920	33730	33731							-0.008444815081475099
YLFISPESF	9	Unmodified	_YLFISPESF_					0	0	0			REV__ENST00000520372.5_1_1:26655223-26662846:-|nuORF	REV__ENST00000520372.5_1_1:26655223-26662846:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	551.776408	1101.53826	0.64495	0.00035587	0.71546	0.00039477	1.3604	0.00075064	551.7764440035703	84.51	0.63268	84.591	84.303	84.935	0.080879	0.0014052	-0.00010971	NaN	50.855	59	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385670	+		58786	17920	33730	33731							-0.008444815081475099
YLFISPESF	9	Unmodified	_YLFISPESF_					0	0	0			REV__ENST00000520372.5_1_1:26655223-26662846:-|nuORF	REV__ENST00000520372.5_1_1:26655223-26662846:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	551.776408	1101.53826	0.57934	0.00031967	0.84441	0.00046592	1.4237	0.00078559	551.77650976984	84.582	0.96574	84.569	84.051	85.017	-0.01284	-0.02015	3.2587E-05	NaN	50.855	63	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	425810	+		58787	17920	33730	33731							-0.008444815081475099
YLFIVTLPP	9	Unmodified	_YLFIVTLPP_					0	0	0			REV__LTR7_dup199|chr2:34795645-34796056:+|1.7721870192642777|0.2363150647252871|2.91|523.0|15|3|sense	REV__LTR7_dup199|chr2:34795645-34796056:+|1.7721870192642777|0.2363150647252871|2.91|523.0|15|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8170166015625	2	531.815336	1061.61612	0.47942	0.00025496	1.0502	0.00055851	1.5296	0.00081348	531.8167311126964	81.476	1.705	81.476	81.108	82.813	0					198	67	6	0	0	0	0.32733	1	21393	21393		4.756	0	1	1710600	+		58788	22846	33731	33732	71758	71758					0.08777576147895161
YLFIVTLPP	9	Unmodified	_YLFIVTLPP_					0	0	0			REV__LTR7_dup199|chr2:34795645-34796056:+|1.7721870192642777|0.2363150647252871|2.91|523.0|15|3|sense	REV__LTR7_dup199|chr2:34795645-34796056:+|1.7721870192642777|0.2363150647252871|2.91|523.0|15|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.81689453125	2	531.815336	1061.61612	0.49315	0.00026227	1.7573	0.00093458	2.2505	0.0011968	531.816739436679	81.506	2.0425	81.482	81.161	83.204	-0.02404					202	83	5	0	0	0	0.32733	1	21372	21372		4.756	0	1	2014200	+		58789	22846	33731	33732	71759	71759					0.08777576147895161
YLFIYYLI	8	Unmodified	_YLFIYYLI_					0	0	0		ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8300170898438	2	554.309887	1106.60522	0.38607	0.000214	3.8452	0.0021314	4.2313	0.0023454	554.3110666828997	90.232	0.63763	90.232	89.787	90.425	0					124	53	3	0	0	0	0.34147	1	23944	23944		11.114	1.767	1	121790			58790	7787	33732	33733	71760	71760					0.05618173773609669
YLFKCLIN	8	Unmodified	_YLFKCLIN_					0	0	0		ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.767822265625	2	507.278063	1012.54157	0.32914	0.00016697	1.9551	0.00099176	2.2842	0.0011587	507.2789027067411	49.644	0.95575	49.665	49.457	50.413	0.020691					43	35	2	0	0	0	0.33245	1	11475	11475		2.0598	0	1	362630			58791	3335	33733	33734	71761	71761					0.035804900648713556
YLFKEHIT	8	Unmodified	_YLFKEHIT_					0	0	0			REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	REV__nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8193359375	2	525.784567	1049.55458	0.62635	0.00032932	-3.2137	-0.0016897	-2.5874	-0.0013604	525.782594160848	49.552	0.4825	49.552	49.218	49.701	0					22	17	2	0	0	0	0.33995	1	11338	11338		10.183	0.10947	1	135870	+		58792	18498	33734	33735	71762	71762					0.031786444485987886
YLFLGINFR	9	Unmodified	_YLFLGINFR_					0	0	0		ENST00000577716.5_1_17:56493054-56494464:-|nuORF	ENST00000577716.5_1_17:56493054-56494464:-|nuORF	ENST00000577716.5_1_17:56493054-56494464:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.3344116210938	2	571.821484	1141.62842	0.094241	5.3889E-05	0.57381	0.00032812	0.66805	0.00038201	571.8218311849032	41.465	1.0575	41.465	40.473	41.531	0					83	38	3	0	0	0	0.23783	1	8877	8877		18.135	1.1927	1	854150			58793	12055	33735	33736	71763	71763					0.0632661261092835
YLFLGINFR	9	Unmodified	_YLFLGINFR_					0	0	0		ENST00000577716.5_1_17:56493054-56494464:-|nuORF	ENST00000577716.5_1_17:56493054-56494464:-|nuORF	ENST00000577716.5_1_17:56493054-56494464:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.3344116210938	2	571.821484	1141.62842	0.11662	6.6687E-05	0.55939	0.00031987	0.67601	0.00038656	571.8218577056153	41.038	1.1107	41.135	40.337	41.448	0.096622					95	40	3	0	0	0	0.21905	1	8823	8823		23.148	9.6405	1	783690			58794	12055	33735	33736	71764	71764					0.0632661261092835
YLFQGQANQF	10	Unmodified	_YLFQGQANQF_					0	0	0			REV__ENST00000490526.1_1_2:220097047-220098161:+|nuORF	REV__ENST00000490526.1_1_2:220097047-220098161:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	405.8899841308594	3	405.864617	1214.57202	-0.060879	-2.4709E-05	-0.87494	-0.00035511	-0.93582	-0.00037981	405.86428101168036	43.732	0.50656	43.81	43.567	44.074	0.077515					30	18	2	0	0	0	0.3156	1	9590	9590		3.5871	0	1	364850	+		58795	17062	33736	33737	71765	71765					-0.026680600163899726
YLFSPVYDF	9	Unmodified	_YLFSPVYDF_					0	0	0			REV__ENSG00000176994|ENST00000406438|SMCR8	REV__ENSG00000176994|ENST00000406438|SMCR8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.3182373046875	2	575.776408	1149.53826	0.25449	0.00014653	-2.3136	-0.0013321	-2.0591	-0.0011856	575.7753153834437	62.808	0.80542	62.808	62.45	63.256	0					50	27	3	0	0	0	0.24311	1	15637	15637		16.942	4.4107	1	526810	+		58796	17965	33737	33738	71766	71766					-0.03052481508143501
YLFSPVYDF	9	Unmodified	_YLFSPVYDF_					0	0	0			REV__ENSG00000176994|ENST00000406438|SMCR8	REV__ENSG00000176994|ENST00000406438|SMCR8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	575.776408	1149.53826	0.40538	0.00023341	-2.7526	-0.0015849	-2.3473	-0.0013515	576.2755546590835	63.058	0.13232	63.154	63.096	63.228	0.095722	0.1729	-0.00045523	NaN	11.64	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193060	+		58797	17965	33737	33738							-0.03052481508143501
YLFTATIVLI	10	Unmodified	_YLFTATIVLI_					0	0	0			REV__ENSG00000117620|ENST00000533028|SLC35A3	REV__ENSG00000117620|ENST00000533028|SLC35A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.7738647460938	2	577.347	1152.67945	0.21935	0.00012664	0.21534	0.00012433	0.43469	0.00025097	577.3470018504831	80.421	0.76043	80.421	79.897	80.657	0					43	27	2	0	0	0	0.318	1	20756	20756		7.2892	0	1	291030	+		58798	14982	33738	33739	71767	71767					0.10921516865141712
YLFTFKSTI	9	Unmodified	_YLFTFKSTI_					0	0	0			REV__nc|ENSG00000174611|Q8NBH2-3|KY	REV__nc|ENSG00000174611|Q8NBH2-3|KY	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.306640625	2	560.307875	1118.6012	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.309	1	95.309	94.809	95.809	0								0	0	0	0.25499	1	25442	25442		4.756	0	1		+		58799	17845	33739	33740	71768	71768					0.04664084279920644
YLFVVTLHSG	10	Unmodified	_YLFVVTLHSG_					0	0	0			REV__ENSG00000172150|ENST00000381951|OR1A2	REV__ENSG00000172150|ENST00000381951|OR1A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2948608398438	2	568.310949	1134.60735	0.22113	0.00012567	-0.125	-7.1038E-05	0.096135	5.4634E-05	568.3106577343453	67.252	0.76619	67.252	67.076	67.842	0					44	26	3	0	0	0	0.31051	1	16867	16867		16.942	0	1	555980	+		58800	17696	33740	33741	71769	71769					0.045426025114238655
YLGAKVNAAF	10	Unmodified	_YLGAKVNAAF_					0	0	0		nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3	nc|ENSG00000138741|Q13507-3|TRPC3	nc|ENSG00000138741|Q13507-3|TRPC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.272216796875	2	527.290017	1052.56548	0.47679	0.00025141	0.27013	0.00014244	0.74692	0.00039384	527.2902850027666	52.109	1.1227	52.109	51.809	52.932	0					60	40	2	0	0	0	0.2892	1	12331	12331		21.747	0	1	1148200			58801	4185	33741	33742	71770	71770					0.04130046822888289
YLGAKVNAAF	10	Unmodified	_YLGAKVNAAF_					0	0	0		nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3	nc|ENSG00000138741|Q13507-3|TRPC3	nc|ENSG00000138741|Q13507-3|TRPC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.272216796875	2	527.290017	1052.56548	0.46897	0.00024728	-0.084206	-4.4401E-05	0.38476	0.00020288	527.2902110797512	52.019	0.8652	52.07	51.846	52.711	0.050575					59	31	3	0	0	0	0.29978	1	12302	12302		20.454	3.5113	1	1212800			58802	4185	33741	33742	71771	71771					0.04130046822888289
YLGEELVCHN	10	Unmodified	_YLGEELVCHN_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8300170898438	2	588.771331	1175.52811	0.36817	0.00021677	0.55848	0.00032882	0.92665	0.00054558	589.2734402722797	67.528	0.72029	67.528	67.25	67.97	0					44	24	2	0	0	0	0.31267	1	17082	17082		14.838	0.93222	1	645210	+		58803	13882	33742	33743	71772	71772					-0.05263412505019005
YLGFEKDVF	9	Unmodified	_YLGFEKDVF_					0	0	0		ENST00000512078.5_1_5:59893582-59984814:-|nuORF;nc|ENSG00000035499|Q8WUY9-2|DEPDC1B;ENSG00000035499|ENST00000265036|DEPDC1B	ENST00000512078.5_1_5:59893582-59984814:-|nuORF	ENST00000512078.5_1_5:59893582-59984814:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.2916870117188	2	559.281857	1116.54916	0.52049	0.0002911	-1.2106	-0.00067709	-0.69015	-0.00038599	559.2814836657403	66.06	0.38981	66.06	65.927	66.317	0					17	13	2	0	0	0	0.1669	1	16559	16559		28.487	1.6032	1	83154			58804	574	33743	33744	71773	71773					-0.004450791338740601
YLGFSEYFF	9	Unmodified	_YLGFSEYFF_					0	0	0			REV__ENSG00000107951|ENST00000263063|MTPAP	REV__ENSG00000107951|ENST00000263063|MTPAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8480834960938	2	586.768583	1171.52261	0.42876	0.00025158	2.0791	0.00122	2.5079	0.0014716	587.2709862118411	68.963	0.16707	69.035	68.905	69.072	0.071938					6	5	2	0	0	0	0.24311	1	17367	17367		16.942	0	1	130620	+		58805	14575	33744	33745	71774	71774					-0.05628768025212594
YLGGVFRLE	9	Unmodified	_YLGGVFRLE_					0	0	0			REV__ENST00000438179.1_1_10:17619435-17619498:+|nuORF	REV__ENST00000438179.1_1_10:17619435-17619498:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	526.812744140625	2	527.290017	1052.56548	0.71719	0.00037817	-0.80017	-0.00042192	-0.082974	-4.3751E-05	527.2898410888795	64.134	1.1597	64.124	63.563	64.723	-0.0095291					91	41	3	0	0	0	0.24913	1	16089	16089		12.532	0.89125	1	411740	+		58806	21021	33745	33746	71775	71775					0.04130046822888289
YLGKVLEL	8	Unmodified	_YLGKVLEL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.78399658203125	2	467.784036	933.553519	0.67879	0.00031752	-1.4732	-0.00068916	-0.79446	-0.00037164	467.7832321227717	55.951	0.50451	55.951	55.707	56.212	0					25	17	2	0	0	0	0.20663	1	13402	13402		41.84	3.8656	1	643930			58807	3625	33746	33747	71776	71776					0.08408430079703066
YLGKVLEL	8	Unmodified	_YLGKVLEL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.7835388183594	2	467.784036	933.553519	0.5075	0.0002374	-1.072	-0.00050146	-0.5645	-0.00026406	467.78349209075486	55.897	0.38495	55.968	55.777	56.162	0.070885					23	13	2	0	0	0	0.22007	1	13369	13369		39.95	3.8227	1	723510			58808	3625	33746	33747	71777	71777					0.08408430079703066
YLGKVLEL	8	Unmodified	_YLGKVLEL_					0	0	0		nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF	nc|ENSG00000132361|O75153|CLUH	nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.7835998535156	2	467.784036	933.553519	0.71974	0.00033668	-1.3134	-0.00061439	-0.59365	-0.0002777	467.7832808056169	56.025	0.38904	56.006	55.824	56.213	-0.019081					23	13	2	0	0	0	0.20663	1	13431	13431		41.84	3.8656	1	751930			58809	3625	33746	33747	71778	71778					0.08408430079703066
YLGLARKKS	9	Unmodified	_YLGLARKKS_					0	0	0		ENSG00000109943|ENST00000227348|CRTAM;nc|ENSG00000109943|O95727-2|CRTAM	ENSG00000109943|ENST00000227348|CRTAM	ENSG00000109943|ENST00000227348|CRTAM	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3170776367188	2	518.319109	1034.62366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.825	1	73.794	73.294	74.294	-0.030655								0	0	0	0.24311	1	18873	18873		8.5933	0.68312	1				58810	2283	33747	33748	71779	71779					0.10773728468188892
YLGLNSQQV	9	Unmodified	_YLGLNSQQV_					0	0	0		ENSG00000169154|ENST00000307599|GOT1L1	ENSG00000169154|ENST00000307599|GOT1L1	ENSG00000169154|ENST00000307599|GOT1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.742919921875	2	511.269281	1020.52401	0.7941	0.000406	-1.388	-0.00070964	-0.5939	-0.00030364	511.26883668541836	47.326	0.40228	47.38	47.196	47.598	0.054375					22	14	2	0	0	0	0.21389	1	10693	10693		13.906	0.86358	1	132760			58811	6332	33748	33749	71780	71780					0.0145686606357458
YLGLPRLEF	9	Unmodified	_YLGLPRLEF_					0	0	0		ENSG00000112759|ENST00000371755|SLC29A1;nc|ENSG00000112759|Q99808-2|SLC29A1	ENSG00000112759|ENST00000371755|SLC29A1	ENSG00000112759|ENST00000371755|SLC29A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8302001953125	2	554.313492	1106.61243	0.3972	0.00022017	-2.6464	-0.0014669	-2.2492	-0.0012467	554.3114956030196	90.276	0.54434	90.277	90.032	90.576	0.00039673					77	39	3	0	0	0	0.24542	1	23914	23914		9.3474	0	1	135310			58812	2459	33749	33750	71781	71781					0.0633890637402601
YLGLSLLPF	9	Unmodified	_YLGLSLLPF_					0	0	0			REV__ENST00000530796.1_1_8:145140395-145141025:+|nuORF	REV__ENST00000530796.1_1_8:145140395-145141025:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.78668212890625	2	511.799686	1021.58482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.005	1	64.005	63.505	64.505	0								0	0	0	0.21357	1	15885	15885		18.135	0	1		+		58813	18771	33750	33751	71782	71782					0.07489003113812487
YLGLYAVGNF	10	Unmodified	_YLGLYAVGNF_					0	0	0		nc|ENSG00000117600|Q7Z2D5-2|PLPPR4;ENSG00000117600|ENST00000370185|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.3056640625	2	558.78985	1115.56515	0.48959	0.00027358	0.065352	3.6518E-05	0.55494	0.00031009	559.2913585347163	64.024	1.095	64.117	63.678	64.773	0.09288					54	39	2	0	0	0	0.27772	1	15883	15883		26.884	1.8927	1	311020			58814	2802	33751	33752	71783	71783					0.011986271030536955
YLGQKGGKLY	10	Unmodified	_YLGQKGGKLY_					0	0	0		MASTL|p.S550Lfs*5|1|0.09|ENSG00000120539|chr10:27170606-27170607|-/TTAGCAC|frameshift_variant;nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL	MASTL|p.S550Lfs*5|1|0.09|ENSG00000120539|chr10:27170606-27170607|-/TTAGCAC|frameshift_variant	MASTL|p.S550Lfs*5|1|0.09|ENSG00000120539|chr10:27170606-27170607|-/TTAGCAC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.8170776367188	2	563.816399	1125.61824	0.39937	0.00022517	0.94402	0.00053225	1.3434	0.00075742	563.8170241449711	54.047	0.48696	54.031	53.764	54.251	-0.015923					28	17	2	0	0	0	0.2892	1	12803	12803		21.747	0	1	411300			58815	2950	33752	33753	71784	71784					0.06046004885729417
YLGQKGGKLY	10	Unmodified	_YLGQKGGKLY_					0	0	0		MASTL|p.S550Lfs*5|1|0.09|ENSG00000120539|chr10:27170606-27170607|-/TTAGCAC|frameshift_variant;nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL	MASTL|p.S550Lfs*5|1|0.09|ENSG00000120539|chr10:27170606-27170607|-/TTAGCAC|frameshift_variant	MASTL|p.S550Lfs*5|1|0.09|ENSG00000120539|chr10:27170606-27170607|-/TTAGCAC|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	563.816399	1125.61824	0.50437	0.00028437	1.386	0.00078146	1.8904	0.0010658	564.3184005674434	53.864	0.4557	53.864	53.595	54.05	0	-0.034133	0.00026409	NaN	21.747	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352400			58816	2950	33752	33753							0.06046004885729417
YLGQKGGKLY	10	Unmodified	_YLGQKGGKLY_					0	0	0		MASTL|p.S550Lfs*5|1|0.09|ENSG00000120539|chr10:27170606-27170607|-/TTAGCAC|frameshift_variant;nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL	MASTL|p.S550Lfs*5|1|0.09|ENSG00000120539|chr10:27170606-27170607|-/TTAGCAC|frameshift_variant	MASTL|p.S550Lfs*5|1|0.09|ENSG00000120539|chr10:27170606-27170607|-/TTAGCAC|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	563.816399	1125.61824	0.2736	0.00015426	1.1287	0.00063639	1.4023	0.00079065	563.8172191441672	53.744	0.39463	53.8	53.585	53.98	0.056259	-0.098567	-2.6048E-05	NaN	21.747	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377760			58817	2950	33752	33753							0.06046004885729417
YLGQRAMLDA	10	Unmodified	_YLGQRAMLDA_					0	0	0			REV__ENSG00000108828|ENST00000355653|VAT1	REV__ENSG00000108828|ENST00000355653|VAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.81005859375	2	569.289691	1136.56483	0.19499	0.00011101	-0.052948	-3.0143E-05	0.14204	8.0864E-05	569.2896575360246	61.963	1.4656	61.963	61.652	63.117	0					166	54	5	0	0	0	0.2593	1	15191	15191		25.399	1.3787	1	9522300	+		58818	14609	33753	33754	71785	71785					0.0020088411154119967
YLGQRAMLDA	10	Unmodified	_YLGQRAMLDA_					0	0	0			REV__ENSG00000108828|ENST00000355653|VAT1	REV__ENSG00000108828|ENST00000355653|VAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.81005859375	2	569.289691	1136.56483	0.19499	0.00011101	-0.052948	-3.0143E-05	0.14204	8.0864E-05	569.2896575360246	61.963	1.4656	61.963	61.652	63.117	0					166	54	5	0	0	0	0.28434	1	15191	15191		25.399	1.3787	1	9522300	+		58819	14609	33753	33754	71786	71786					0.0020088411154119967
YLGQRAMLDA	10	Unmodified	_YLGQRAMLDA_					0	0	0			REV__ENSG00000108828|ENST00000355653|VAT1	REV__ENSG00000108828|ENST00000355653|VAT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.8099975585938	2	569.289691	1136.56483	0.069023	3.9294E-05	0.032225	1.8345E-05	0.10125	5.7639E-05	569.2897051766987	61.948	1.5223	61.939	61.613	63.136	-0.0085526					181	55	5	0	0	0	0.28434	1	15177	15177		25.399	25.399	1	9760800	+		58820	14609	33753	33754	71787	71787					0.0020088411154119967
YLGRFAFLSG	10	Unmodified	_YLGRFAFLSG_					0	0	0			REV__CON__Q3ZBS7	REV__CON__Q3ZBS7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.761474609375	2	565.803291	1129.59203	0.072018	4.0748E-05	0.44492	0.00025174	0.51693	0.00029248	565.8032010341361	65.283	0.93877	65.271	64.922	65.861	-0.01133					58	30	3	0	0	0	0.3156	1	16204	16204		10.824	4.1008	1	923990	+	+	58821	13271	33754	33755	71788	71788					0.032417357142321634
YLGRGPGL	8	Unmodified	_YLGRGPGL_					0	0	0		ENSG00000126266|ENST00000246553|FFAR1	ENSG00000126266|ENST00000246553|FFAR1	ENSG00000126266|ENST00000246553|FFAR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.491943359375	2	416.73742	831.460287	0.60622	0.00025263	-0.60973	-0.0002541	-0.0035081	-1.462E-06	416.73696980331704	48.069	0.52756	48.116	47.945	48.472	0.047523					29	19	2	0	0	0	0.34247	1	10946	10946		8.5933	0	1	397710			58822	3267	33755	33756	71789	71789					0.03781550417136259
YLGRRSWCC	9	Unmodified	_YLGRRSWCC_					0	0	0		ENSG00000099991|ENST00000263119|CABIN1;nc|ENSG00000099991|Q9Y6J0-2|CABIN1;CABIN1|p.I1015Lfs*44|1|0.05|ENSG00000099991|chr22:24084710-24084711|-/TTGAAAAAAAG|frameshift_variant	ENSG00000099991|ENST00000263119|CABIN1	ENSG00000099991|ENST00000263119|CABIN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.2785034179688	2	572.262953	1142.51135	0.38639	0.00022112	-1.9906	-0.0011391	-1.6042	-0.00091802	572.2616974738085	79.481	0.52364	79.452	79.252	79.776	-0.028931					37	20	3	0	0	0	0.31417	1	20613	20613		6.7232	6.7232	1	195280			58823	1509	33756	33757	71790	71790					-0.05420191871962743
YLGSKGPIKF	10	Unmodified	_YLGSKGPIKF_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3052978515625	2	555.321317	1108.62808	0.30801	0.00017104	0.093638	5.1999E-05	0.40164	0.00022304	555.3213775068799	66.729	0.73012	66.813	66.544	67.274	0.083832					60	25	3	0	0	0	0.33268	2	16693	16693;16799		15.847	2.3393	1	579930	+		58824	16073	33757	33758	71791;71792	71791					0.07811192891085739
YLGSKGPIKF	10	Unmodified	_YLGSKGPIKF_					0	0	0			REV__ENSG00000141431|ENST00000269197|ASXL3	REV__ENSG00000141431|ENST00000269197|ASXL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.3053588867188	2	555.321317	1108.62808	0.086428	4.7995E-05	0.72114	0.00040046	0.80757	0.00044846	555.3216300361184	66.802	0.66733	66.788	66.572	67.239	-0.013596					67	23	4	0	0	0	0.33268	1	16841	16841		15.847	1.9411	1	572800	+		58825	16073	33757	33758	71793	71793					0.07811192891085739
YLGSWIEG	8	Unmodified	_YLGSWIEG_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	462.7632141113281	2	462.726718	923.438883	0.19613	9.0753E-05	0.56636	0.00026207	0.76249	0.00035282	462.72675648883944	64.115	0.92335	64.208	63.737	64.66	0.09288					44	33	2	0	0	0	0.31375	1	15846	15846		26.341	26.341	1	149940			58826	1217	33758	33759	71794	71794					-0.025898794022282345
YLGTGVTIIF	10	Unmodified	_YLGTGVTIIF_					0	0	0			REV__ENSG00000164953|ENST00000453321|TMEM67	REV__ENSG00000164953|ENST00000453321|TMEM67	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.6707763671875	2	542.307875	1082.6012	0.13841	7.506E-05	-0.22712	-0.00012317	-0.088708	-4.8107E-05	542.3075403069458	97.876	0.17233	97.876	97.786	97.959	0					28	20	2	0	0	0	0.31629	1	26159	26159		6.2058	0	1	40322	+		58827	17195	33759	33760	71795	71795					0.06320084279900584
YLGTRGLKRN	10	Unmodified	_YLGTRGLKRN_					0	0	0			REV__nc|ENSG00000033170|Q9BYC5-4|FUT8	REV__nc|ENSG00000033170|Q9BYC5-4|FUT8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.343505859375	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.13	1	118.13	117.63	118.63	0								0	0	0	0.38126	1	30525	30525		1.6526	0	1		+		58828	13501	33760	33761	71796	71796					0.09147016757151505
YLGVEIEGLF	10	Unmodified	_YLGVEIEGLF_					0	0	0			REV__ENSG00000177409|ENST00000318238|SAMD9L	REV__ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.7896728515625	2	570.30279	1138.59103	0.62627	0.00035716	1.6669	0.00095061	2.2931	0.0013078	570.3033129938275	78.378	0.42572	78.436	78.31	78.736	0.058151					21	15	2	0	0	0	0.31876	1	20242	20242		18.135	3.5533	1	109430	+		58829	17987	33761	33762	71797	71797					0.02727476554673558
YLGVRLKAF	9	Unmodified	_YLGVRLKAF_					0	0	0		ENST00000398733.7_1_5:139006611-139006695:+|nuORF	ENST00000398733.7_1_5:139006611-139006695:+|nuORF	ENST00000398733.7_1_5:139006611-139006695:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.309326171875	2	533.824027	1065.6335	0.46717	0.00024939	-0.031357	-1.6739E-05	0.43582	0.00023265	533.8237789635959	65.325	3.1909	65.325	64.288	67.479	0					146	114	2	0	0	0	0.21905	1	16456	16456		23.148	15.238	1	243850			58830	10171	33762	33763	71798	71798					0.10330916473549223
YLGVRLKAF	9	Unmodified	_YLGVRLKAF_					0	0	0		ENST00000398733.7_1_5:139006611-139006695:+|nuORF	ENST00000398733.7_1_5:139006611-139006695:+|nuORF	ENST00000398733.7_1_5:139006611-139006695:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.2899169921875	2	533.824027	1065.6335	0.50133	0.00026762	-0.33794	-0.0001804	0.16339	8.7223E-05	533.823404602882	67.729	0.20448	67.729	67.673	67.878	0					10	6	2	0	0	0	0.23783	1	17035	17035		18.135	7.9516	1	78372			58831	10171	33762	33763	71799	71799					0.10330916473549223
YLGVTGLTFL	10	Unmodified	_YLGVTGLTFL_					0	0	0			REV__ENST00000342494.7_1_12:109915721-109915814:+|nuORF	REV__ENST00000342494.7_1_12:109915721-109915814:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7739868164062	2	542.307875	1082.6012	0.47069	0.00025526	0.34259	0.00018579	0.81328	0.00044105	542.3078083210729	68.151	0.38419	68.151	67.842	68.226	0					19	13	2	0	0	0	0.2504	1	17068	17068		34.102	5.6156	1	140480	+		58832	20122	33763	33764	71800	71800					0.06320084279900584
YLGVTGLTFL	10	Unmodified	_YLGVTGLTFL_					0	0	0			REV__ENST00000342494.7_1_12:109915721-109915814:+|nuORF	REV__ENST00000342494.7_1_12:109915721-109915814:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	542.307875	1082.6012	0.58744	0.00031857	0.64536	0.00034999	1.2328	0.00066856	542.3077916526356	68.059	0.2664	68.043	67.909	68.175	-0.016304	-0.05437	0.00024003	NaN	34.102	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166180	+		58833	20122	33763	33764							0.06320084279900584
YLGVYVFKY	9	Unmodified	_YLGVYVFKY_					0	0	0		nc|ENSG00000138722|Q13201-2|MMRN1;ENSG00000138722|ENST00000264790|MMRN1	nc|ENSG00000138722|Q13201-2|MMRN1	nc|ENSG00000138722|Q13201-2|MMRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.2945556640625	2	576.310418	1150.60628	0.045308	2.6111E-05	2.4699	0.0014234	2.5152	0.0014496	576.3127080949388	94.923	0.64127	94.923	94.652	95.293	0					90	56	3	0	0	0	0.30166	1	25398	25398		8.5933	0.68312	1	141340			58834	4183	33764	33765	71801	71801					0.037003881425107465
YLGVYVFKY	9	Unmodified	_YLGVYVFKY_					0	0	0		nc|ENSG00000138722|Q13201-2|MMRN1;ENSG00000138722|ENST00000264790|MMRN1	nc|ENSG00000138722|Q13201-2|MMRN1	nc|ENSG00000138722|Q13201-2|MMRN1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	576.310418	1150.60628	0.045308	2.6111E-05	2.4699	0.0014234	2.5152	0.0014496	576.3127080949388	94.923	0.64127	94.923	94.652	95.293	0	0.022948	-0.0019113	NaN	8.5933	90	56	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141340			58835	4183	33764	33765							0.037003881425107465
YLGYYQSAF	9	Unmodified	_YLGYYQSAF_					0	0	0		nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000553208.5_1_12:58087944-58109621:+|nuORF;nc|ENSG00000135506|Q13438-5|OS9	nc|ENSG00000135506|Q13438-8|OS9	nc|ENSG00000135506|Q13438-8|OS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2572631835938	2	556.258382	1110.50221	0.53582	0.00029806	-0.57204	-0.0003182	-0.036214	-2.0145E-05	556.257328606141	64.016	0.81699	64.016	63.746	64.563	0					85	29	4	0	0	0	0.11461	1	15868	15868		36.127	13.391	1	1065200			58836	3880	33765	33766	71802	71802					-0.04861938685007772
YLHDLKTF	8	Unmodified	_YLHDLKTF_					0	0	0			REV__ENST00000496314.1_1_13:45009134-45009254:-|nuORF	REV__ENST00000496314.1_1_13:45009134-45009254:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	519.3326416015625	2	518.776742	1035.53893	0.42661	0.00022132	1.0415	0.0005403	1.4681	0.00076162	518.7771560217649	36.838	0.27679	36.925	36.841	37.117	0.08741					11	9	2	0	0	0	0.34185	1	7533	7533		10.183	4.9527	1	55719	+		58837	21669	33766	33767	71803	71803					0.022583579315551106
YLHKKIRR	8	Unmodified	_YLHKKIRR_					0	0	0		L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|24|2|sense	L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|24|2|sense	L1MB7_dup8212|chr7:53345969-53347385:-|1.011945793474188|0.0072312460537075|7.13|506.0|24|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7738647460938	2	557.353817	1112.69308	0.17372	9.6825E-05	-0.96926	-0.00054022	-0.79553	-0.00044339	557.854618951892	26.279	0.24695	26.241	26.069	26.316	-0.038671					11	8	2	0	0	0	0.344	1	4286	4286		2.5775	0.27475	1	93232			58838	12447	33767	33768	71804	71804					0.14124232207609566
YLHKKNII	8	Unmodified	_YLHKKNII_					0	0	0		ENST00000525284.5_1_15:101565016-101602660:+|nuORF;ENSG00000154237|ENST00000388948|LRRK1	ENST00000525284.5_1_15:101565016-101602660:+|nuORF	ENST00000525284.5_1_15:101565016-101602660:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.2584838867188	2	514.816202	1027.61785	0.095305	4.9065E-05	0.70507	0.00036298	0.80037	0.00041205	514.8162385404808	69.403	0.43988	69.381	69.181	69.621	-0.022087					23	15	2	0	0	0	0.34046	1	17511	17511		14.582	5.9884	1	231990			58839	5113	33768	33769	71805	71805					0.10514629956514909
YLHLLSLSV	9	Unmodified	_YLHLLSLSV_					0	0	0			REV__ENSG00000272398|ENST00000606017|CD24	REV__ENSG00000272398|ENST00000606017|CD24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3173217773438	2	522.808042	1043.60153	0.50173	0.00026231	-1.7645	-0.00092248	-1.2627	-0.00066017	522.8070740612627	63.371	0.42855	63.363	63.076	63.504	-0.0085526					26	15	2	0	0	0	0.17611	1	15593	15593		34.102	12.356	1	333620	+		58840	19316	33769	33770	71806	71806					0.08147503999771288
YLHLLSLSV	9	Unmodified	_YLHLLSLSV_					0	0	0			REV__ENSG00000272398|ENST00000606017|CD24	REV__ENSG00000272398|ENST00000606017|CD24	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	522.808042	1043.60153	0.51547	0.00026949	-1.8216	-0.00095236	-1.3062	-0.00068287	522.8069801645044	63.315	0.46415	63.315	63.117	63.581	0	-0.0086994	2.2975E-05	NaN	34.102	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388350	+		58841	19316	33769	33770							0.08147503999771288
YLHLLSLSV	9	Unmodified	_YLHLLSLSV_					0	0	0			REV__ENSG00000272398|ENST00000606017|CD24	REV__ENSG00000272398|ENST00000606017|CD24	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	522.808042	1043.60153	0.50708	0.00026511	-1.8915	-0.00098887	-1.3844	-0.00072377	522.8070207263784	63.198	0.44163	63.293	63.122	63.564	0.095722	-0.030222	-5.0043E-05	NaN	34.102	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	445420	+		58842	19316	33769	33770							0.08147503999771288
YLHNNKFTF	9	Unmodified	_YLHNNKFTF_					0	0	0		ENSG00000126861|ENST00000247271|OMG	ENSG00000126861|ENST00000247271|OMG	ENSG00000126861|ENST00000247271|OMG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.2809448242188	2	592.298373	1182.58219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.011	1	48.059	47.559	48.559	0.047523								0	0	0	0.22065	1	10950	10950		15.847	0	1				58843	3297	33770	33771	71807	71807					-0.0017945229117231065
YLHTTTTFT	9	Unmodified	_YLHTTTTFT_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8079223632812	2	542.769114	1083.52368	0.73738	0.00040023	0.74059	0.00040197	1.478	0.0008022	542.7691511174181	78.84	0.67331	78.899	78.58	79.254	0.058151					49	28	3	0	0	0	0.21905	1	20427	20427		23.148	1.4018	1	158270			58844	2221	33771	33772	71808	71808					-0.014745536562941197
YLHVYVLT	8	Unmodified	_YLHVYVLT_					0	0	0		ENST00000261168.8_1_12:14653445-14653610:+|nuORF	ENST00000261168.8_1_12:14653445-14653610:+|nuORF	ENST00000261168.8_1_12:14653445-14653610:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7756042480469	2	504.28166	1006.54877	0.37077	0.00018697	0.75338	0.00037992	1.1241	0.00056689	504.784375354452	72.806	1.4797	72.806	72.348	73.828	0					104	53	3	0	0	0	0.38703	1	18452	18452		20.871	1.6142	1	171280			58845	8960	33772	33773	71809	71809					0.04575545936938852
YLHVYVLT	8	Unmodified	_YLHVYVLT_					0	0	0		ENST00000261168.8_1_12:14653445-14653610:+|nuORF	ENST00000261168.8_1_12:14653445-14653610:+|nuORF	ENST00000261168.8_1_12:14653445-14653610:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7754211425781	2	504.28166	1006.54877	0.29586	0.0001492	0.73258	0.00036943	1.0284	0.00051863	504.7844360926673	72.861	1.2916	72.915	72.434	73.725	0.053841					95	46	3	0	0	0	0.38703	1	18452	18452		20.871	0	1	157060			58846	8960	33772	33773	71810	71810					0.04575545936938852
YLHYPTDAIL	10	Unmodified	_YLHYPTDAIL_					0	0	0			REV__ENSG00000102934|ENST00000219207|PLLP	REV__ENSG00000102934|ENST00000219207|PLLP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.3134765625	2	603.313689	1204.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.21	1	60.21	59.71	60.71	0								0	0	0	0.26329	1	14710	14710		32.305	5.4218	1		+		58847	14342	33773	33774	71811	71811					0.0187028130321778
YLIAGTSRRAL	11	Unmodified	_YLIAGTSRRAL_					0	0	0			REV__Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|52|2|anti-sense	REV__Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|52|2|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.5746765136719	3	407.575178	1219.70371	0.056368	2.2974E-05	-0.63051	-0.00025698	-0.57414	-0.00023401	407.5747055419907	38.222	0.52435	38.313	37.959	38.483	0.090881					62	18	4	0	0	0	0.39234	1	7959	7959		6.6235	0	1	813130	+		58848	22729	33774	33775	71812	71812					0.10264170071377521
YLIAPKSQF	9	Unmodified	_YLIAPKSQF_					0	0	0		ENST00000480101.1_1_3:142499823-142503920:+|nuORF;nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1	ENST00000480101.1_1_3:142499823-142503920:+|nuORF	ENST00000480101.1_1_3:142499823-142503920:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.277099609375	2	533.800217	1065.58588	0.55825	0.000298	-0.55273	-0.00029505	0.0055257	2.9496E-06	533.7997502526426	71.76	0.24287	71.733	71.63	71.873	-0.027275					11	8	2	0	0	0	0.24913	1	18244	18244		7.9102	0	1	114500			58849	4624	33775	33776	71813	71813					0.055712174827021954
YLIARDVGF	9	Unmodified	_YLIARDVGF_					0	0	0			REV__nc|ENSG00000138448|P06756-3|ITGAV	REV__nc|ENSG00000138448|P06756-3|ITGAV	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.8713989257812	2	527.290017	1052.56548	0.5514	0.00029075	0.14563	7.6787E-05	0.69703	0.00036754	527.2906139033147	62.255	0.44969	62.255	62.051	62.501	0					25	16	2	0	0	0	0.1854	1	15418	15418		32.305	3.8186	1	110390	+		58850	15930	33776	33777	71814	71814					0.04130046822888289
YLIDMLRQVL	10	Unmodified	_YLIDMLRQVL_					0	0	0			REV__nc|ENSG00000166974|Q15555-4|MAPRE2	REV__nc|ENSG00000166974|Q15555-4|MAPRE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.91021728515625	3	421.90917	1262.70568	0.20815	8.7819E-05	1.6842	0.00071058	1.8924	0.0007984	421.90985640870315	34.055	0.39594	34.055	33.94	34.336	0					23	13	2	0	0	0	0.324	1	6694	6694		17.443	3.2245	1	211040	+		58851	17353	33777	33778	71815	71815					0.0848346276495704
YLIDMLRQVL	10	Unmodified	_YLIDMLRQVL_					0	0	0			REV__nc|ENSG00000166974|Q15555-4|MAPRE2	REV__nc|ENSG00000166974|Q15555-4|MAPRE2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	421.90917	1262.70568	0.20815	8.7819E-05	1.6842	0.00071058	1.8924	0.0007984	421.90985640870315	34.055	0.39594	34.055	33.94	34.336	0	0	0	NaN	17.443	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211040	+		58852	17353	33777	33778							0.0848346276495704
YLIESDCKYD	10	Unmodified	_YLIESDCKYD_					0	0	0			REV__PTPRC|p.E364D|1|0.37|ENSG00000081237|chr1:198709745-198709745|G/C|missense_variant	REV__PTPRC|p.E364D|1|0.37|ENSG00000081237|chr1:198709745-198709745|G/C|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.7763061523438	2	624.776279	1247.538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.891	1	86.891	86.391	87.391	0								0	0	0	0.34994	1	22889	22889		14.838	0.93222	1		+		58853	23293	33778	33779	71816	71816					-0.07586269290300152
YLIESDCKYD	10	Unmodified	_YLIESDCKYD_					0	0	0			REV__PTPRC|p.E364D|1|0.37|ENSG00000081237|chr1:198709745-198709745|G/C|missense_variant	REV__PTPRC|p.E364D|1|0.37|ENSG00000081237|chr1:198709745-198709745|G/C|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.7752685546875	2	624.776279	1247.538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.613	1	91.613	91.113	92.113	0								0	0	0	0.36441	1	24333	24333		8.7454	0.58988	1		+		58854	23293	33778	33779	71817	71817					-0.07586269290300152
YLIESDCKYD	10	Unmodified	_YLIESDCKYD_					0	0	0			REV__PTPRC|p.E364D|1|0.37|ENSG00000081237|chr1:198709745-198709745|G/C|missense_variant	REV__PTPRC|p.E364D|1|0.37|ENSG00000081237|chr1:198709745-198709745|G/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.7755737304688	2	624.776279	1247.538	-0.25264	-0.00015785	2.0944	0.0013086	1.8418	0.0011507	625.2804795068588	81.28	0.29362	81.349	81.213	81.507	0.068985					22	15	2	0	0	0	0.33817	1	21174	21174		14.838	0.93222	1	59396	+		58855	23293	33778	33779	71818	71818					-0.07586269290300152
YLIESDCKYD	10	Unmodified	_YLIESDCKYD_					0	0	0			REV__PTPRC|p.E364D|1|0.37|ENSG00000081237|chr1:198709745-198709745|G/C|missense_variant	REV__PTPRC|p.E364D|1|0.37|ENSG00000081237|chr1:198709745-198709745|G/C|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.7764892578125	2	624.776279	1247.538	0.34388	0.00021485	0.85615	0.0005349	1.2	0.00074975	624.77673281818	86.665	1.1126	86.659	85.965	87.078	-0.0056229					74	42	2	0	0	0	0.33817	1	22890	22890		14.838	0.93222	1	181580	+		58856	23293	33778	33779	71819	71819					-0.07586269290300152
YLIFDIVYCLV	11	Unmodified	_YLIFDIVYCLV_					0	0	0		ENST00000478436.1_1_3:145795570-145803239:-|nuORF	ENST00000478436.1_1_3:145795570-145803239:-|nuORF	ENST00000478436.1_1_3:145795570-145803239:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	454.245849609375	3	454.245559	1359.71485	-0.10533	-4.7844E-05	1.2382	0.00056242	1.1328	0.00051458	454.2462812694055	27.648	0.88769	27.648	27.354	28.241	0					79	30	3	0	0	0	0.39785	1	4701	4701		11.518	0	1	2364300			58857	10976	33779	33780	71820	71820					0.04937811330637487
YLIFEYCCYG	10	Unmodified	_YLIFEYCCYG_					0	0	0		nc|ENSG00000122025|P36888-2|FLT3;ENSG00000122025|ENST00000241453|FLT3	nc|ENSG00000122025|P36888-2|FLT3	nc|ENSG00000122025|P36888-2|FLT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.328369140625	2	637.267035	1272.51952	0.79168	0.00050451	-0.89744	-0.00057191	-0.10576	-6.74E-05	637.2664795852982	63.778	0.50893	63.769	63.536	64.045	-0.0095329					25	17	2	0	0	0	0.318	1	15813	15813		7.2892	0.18751	1	269540			58858	3027	33780	33781	71821	71821					-0.10584102465873002
YLIFPISIP	9	Unmodified	_YLIFPISIP_					0	0	0			REV__ENST00000372797.7_2_1:40537598-40537793:+|nuORF	REV__ENST00000372797.7_2_1:40537598-40537793:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.8173828125	2	531.815336	1061.61612	0.47942	0.00025496	1.0502	0.00055851	1.5296	0.00081348	531.8167311126964	81.476	1.705	81.476	81.108	82.813	0					198	67	6	0	0	0	0.32733	1	21547	21547		4.756	0	1	1710600	+		58859	20421	33781	33782	71822	71822					0.08777576147895161
YLIGAKNIDL	10	Unmodified	_YLIGAKNIDL_					0	0	0			REV__nc|ENSG00000178177|Q8N3X6|LCORL	REV__nc|ENSG00000178177|Q8N3X6|LCORL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.3241577148438	2	560.324057	1118.63356	0.43364	0.00024298	0.6951	0.00038948	1.1287	0.00063246	560.3247398791082	77.059	0.93613	77.059	76.668	77.604	0					68	34	3	0	0	0	0.24708	1	19873	19873		36.127	3.8215	1	368050	+		58860	23109	33782	33783	71823	71823					0.07898871682891695
YLIGKIKAMV	10	Unmodified	_YLIGKIKAMV_					0	0	0		ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.8192138671875	2	568.34902	1134.68349	0.44865	0.00025499	-0.79476	-0.0004517	-0.3461	-0.00019671	568.3481515333862	44.101	0.60283	44.178	43.92	44.522	0.077515					45	22	3	0	0	0	0.3198	1	9804	9804		4.3292	4.3292	1	616610			58861	3911	33783	33784	71824	71824					0.12153283087172895
YLIGRMDEY	9	Unmodified	_YLIGRMDEY_					0	0	0			REV__ENSG00000177455|ENST00000538922|CD19	REV__ENSG00000177455|ENST00000538922|CD19	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.2872314453125	2	580.276249	1158.53795	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.105	1	73.105	72.605	73.605	0								0	0	0	0.21726	1	18669	18669		16.942	2.104	1		+		58862	17990	33784	33785	71825	71825					-0.03498224499639946
YLIITAAALI	10	Unmodified	_YLIITAAALI_					0	0	0			REV__nc|ENSG00000140563|Q6DN12-3|MCTP2	REV__nc|ENSG00000140563|Q6DN12-3|MCTP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2313842773438	2	531.333893	1060.65323	0.54607	0.00029015	-0.20563	-0.00010926	0.34044	0.00018089	531.3335935551063	72.181	0.40327	72.237	72.033	72.436	0.056572					21	14	2	0	0	0	0.23848	1	18400	18400		37.974	5.1883	1	148460	+		58863	16044	33785	33786	71826	71826					0.12533247693659177
YLIIVEFSR	9	Unmodified	_YLIIVEFSR_					0	0	0			REV__ENST00000515072.1_1_4:10454400-10456238:-|nuORF	REV__ENST00000515072.1_1_4:10454400-10456238:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.8101806640625	2	570.326599	1138.63865	0.35808	0.00020422	-0.43674	-0.00024908	-0.078663	-4.4864E-05	570.3262376142332	58.605	0.59364	58.605	58.298	58.891	0					52	19	4	0	0	0	0.24739	1	14127	14127		13.508	0	1	901880	+		58864	21838	33786	33787	71827	71827					0.07487175545520586
YLIPLEELL	9	Unmodified	_YLIPLEELL_					0	0	0			REV__ENST00000503900.1_1_5:75206464-75206944:+|nuORF	REV__ENST00000503900.1_1_5:75206464-75206944:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.2662963867188	2	551.823358	1101.63216	0.7213	0.00039803	1.0312	0.00056905	1.7525	0.00096708	552.3257565629784	77.316	0.30352	77.285	77.1	77.404	-0.031334					21	10	3	0	0	0	0.25811	1	19907	19907		2.3027	0	1	114650	+		58865	14695	33787	33788	71828	71828					0.08541237594135964
YLIQWILI	8	Unmodified	_YLIQWILI_					0	0	0			REV__ENSG00000198925|ENST00000361242|ATG9A	REV__ENSG00000198925|ENST00000361242|ATG9A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3052978515625	2	531.323328	1060.6321	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.068	1	70.134	69.634	70.634	0.066048								0	0	0	0.35985	1	17734	17734		10.183	0	1		+		58866	18893	33788	33789	71829	71829					0.10421282384800179
YLIRQVLDKQ	10	Unmodified	_YLIRQVLDKQ_					0	0	0			REV__ENSG00000052795|ENST00000264433|FNIP2	REV__ENSG00000052795|ENST00000264433|FNIP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	638.3729248046875	2	638.374612	1274.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.298	1	96.294	95.794	96.794	-0.0038147								0	0	0	0.37664	1	25750	25750		3.5965	0	1		+		58867	13572	33789	33790	71830	71830					0.10829323385587486
YLISSFTDQL	10	Unmodified	_YLISSFTDQL_					0	0	0		ENSG00000108576|ENST00000650711|SLC6A4;nc|ENSG00000108576|P31645-2|SLC6A4	ENSG00000108576|ENST00000650711|SLC6A4	ENSG00000108576|ENST00000650711|SLC6A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7532958984375	2	593.803154	1185.59175	0.42347	0.00025146	3.1323	0.0018599	3.5557	0.0021114	593.8050577380251	73.37	0.64438	73.34	73.073	73.718	-0.029305					34	23	2	0	0	0	0.31267	1	18687	18687		14.838	0	1	155160			58868	2195	33790	33791	71831	71831					0.006382712037066085
YLITAVGEMS	10	Unmodified	_YLITAVGEMS_					0	0	0			REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1	REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8080444335938	2	542.273175	1082.5318	0.4828	0.00026181	4.1366	0.0022431	4.6194	0.002505	542.7756572771056	76.64	0.28139	76.64	76.53	76.812	0					20	9	3	0	0	0	0.28434	1	19790	19790		25.399	7.2643	1	105760	+		58869	18461	33791	33792	71832	71832					-0.006167427311766005
YLITAVGEMS	10	Unmodified	_YLITAVGEMS_					0	0	0			REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1	REV__nc|ENSG00000186684|Q4G0S4-1|CYP27C1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	542.273175	1082.5318	0.75571	0.0004098	4.3401	0.0023535	5.0958	0.0027633	542.7766612848025	76.767	0.15522	76.735	76.599	76.754	-0.031487	0.047624	5.5455E-05	NaN	25.399	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57089	+		58870	18461	33791	33792							-0.006167427311766005
YLIVKSIMI	9	Unmodified	_YLIVKSIMI_					0	0	0			REV__ENST00000552888.1_1_14:32315156-32315513:+|nuORF	REV__ENST00000552888.1_1_14:32315156-32315513:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3302612304688	2	540.330296	1078.64604	0.4138	0.00022359	-0.30716	-0.00016597	0.10665	5.7625E-05	540.3299975168404	76.344	2.4263	76.344	75.154	77.58	0					260	88	5	0	0	0	0.32733	1	19710	19710		4.756	0	1	3193300	+		58871	22221	33792	33793	71833	71833					0.1098619182157563
YLIVKSIMI	9	Unmodified	_YLIVKSIMI_					0	0	0			REV__ENST00000552888.1_1_14:32315156-32315513:+|nuORF	REV__ENST00000552888.1_1_14:32315156-32315513:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8145141601562	2	540.330296	1078.64604	0.64574	0.00034891	-0.36301	-0.00019615	0.28272	0.00015276	540.329719612186	87.591	0.65875	87.585	87.4	88.059	-0.0056229					60	35	3	0	0	0	0.25291	1	23127	23127		9.3474	0	1	130990	+		58872	22221	33792	33793	71834	71834					0.1098619182157563
YLIVPALI	8	Unmodified	_YLIVPALI_					0	0	0			REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.93255615234375	2	451.291497	900.568441	0.11781	5.3167E-05	-0.4278	-0.00019306	-0.30999	-0.00013989	451.29110957258035	92.724	0.37865	92.724	92.518	92.897	0					42	28	2	0	0	0	0.33618	1	24671	24671		11.114	0	1	65171	+		58873	13393	33793	33794	71835	71835					0.11417921947690957
YLIYAPLCPV	10	Unmodified	_YLIYAPLCPV_					0	0	0			REV__ENSG00000167306|ENST00000285039|MYO5B	REV__ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2951049804688	2	576.312103	1150.60965	0.32699	0.00018845	1.1621	0.00066971	1.4891	0.00085816	576.3127738878275	94.912	0.44085	94.91	94.716	95.157	-0.0020142					58	35	2	0	0	0	0.37587	1	25407	25407		7.9102	0	1	131800	+		58874	17375	33794	33795	71836	71836					0.04037314924880775
YLKALKTEF	9	Unmodified	_YLKALKTEF_					0	0	0		ENST00000487904.5_1_2:61408529-61412771:+|nuORF;nc|ENSG00000293434|Q719I0|AHSA2P	ENST00000487904.5_1_2:61408529-61412771:+|nuORF	ENST00000487904.5_1_2:61408529-61412771:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.8214721679688	2	556.82115	1111.62775	0.20131	0.0001121	0.060836	3.3875E-05	0.26215	0.00014597	556.8210260683416	82.038	0.82626	82.107	81.797	82.623	0.068993					49	34	3	0	0	0	0.25526	1	21363	21363		7.9102	0	1	313620			58875	11129	33795	33796	71837	71837					0.07639773171240449
YLKANEVDL	9	Unmodified	_YLKANEVDL_					0	0	0			REV__nc|ENSG00000160179|P45844-7|ABCG1	REV__nc|ENSG00000160179|P45844-7|ABCG1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7849731445312	2	532.784764	1063.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.747	1	39.839	39.339	40.339	0.09267								0	0	0	0.093871	1	8414	8414		47.749	5.7931	1		+		58876	16882	33796	33797	71838	71838					0.025740193777892273
YLKARREK	8	Unmodified	_YLKARREK_					0	0	0			REV__ENSG00000172818|ENST00000335987|OVOL1	REV__ENSG00000172818|ENST00000335987|OVOL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.311279296875	2	532.322183	1062.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.237	1	52.237	51.737	52.737	0								0	0	0	0.34229	1	12249	12249		18.135	1.0221	1		+		58877	17734	33797	33798	71839	71839					0.101002466996988
YLKEAKQLF	9	Unmodified	_YLKEAKQLF_					0	0	0			REV__ENST00000469942.1_1_4:100851605-100867728:-|nuORF	REV__ENST00000469942.1_1_4:100851605-100867728:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	570.308837890625	2	570.326599	1138.63865	0.36533	0.00020836	-0.68455	-0.00039042	-0.31922	-0.00018206	570.3260733648734	57.021	1.3231	57.021	56.37	57.693	0					133	48	4	0	0	0	0.26879	1	13920	13920		13.508	1.8676	1	1702700	+		58878	17115	33798	33799	71840	71840					0.07487175545520586
YLKEFPEEL	9	Unmodified	_YLKEFPEEL_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2861938476562	2	584.300247	1166.58594	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.281	1	60.376	59.876	60.876	0.095093								0	0	0	0.23091	1	14726	14726		12.532	0	1				58879	4077	33799	33800	71841	71841					0.009311726920714136
YLKFFKHIRKL	11	Unmodified	_YLKFFKHIRKL_					0	0	0		ENSG00000225180|ENST00000637878|PVALEF	ENSG00000225180|ENST00000637878|PVALEF	ENSG00000225180|ENST00000637878|PVALEF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.64447021484375	3	498.309885	1491.90782	0.40189	0.00020027	-0.062082	-3.0936E-05	0.33981	0.00016933	498.3097121532675	91.062	0.81814	91.062	90.369	91.188	0					127	61	3	0	0	0	0.48173	1	24192	24192		0.50596	0	1	897570			58880	8444	33800	33801	71842	71842					0.18154734232689407
YLKFFKHIRKL	11	Unmodified	_YLKFFKHIRKL_					0	0	0		ENSG00000225180|ENST00000637878|PVALEF	ENSG00000225180|ENST00000637878|PVALEF	ENSG00000225180|ENST00000637878|PVALEF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3099365234375	3	498.309885	1491.90782	0.40642	0.00020252	-0.078725	-3.9229E-05	0.32769	0.00016329	498.30974714759776	90.871	0.82294	90.962	90.503	91.326	0.090675					139	61	3	0	0	0	0.48173	1	24172	24172		0.50596	0	1	1200300			58881	8444	33800	33801	71843	71843					0.18154734232689407
YLKFFKHIRKL	11	Unmodified	_YLKFFKHIRKL_					0	0	0		ENSG00000225180|ENST00000637878|PVALEF	ENSG00000225180|ENST00000637878|PVALEF	ENSG00000225180|ENST00000637878|PVALEF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3102722167969	3	498.309885	1491.90782	0.37882	0.00018877	-0.062916	-3.1352E-05	0.31591	0.00015742	498.3097733753652	91.836	1.3092	91.927	91.318	92.627	0.090675					269	92	4	0	0	0	0.48173	1	24223	24223		0.50596	0.051438	1	1500100			58882	8444	33800	33801	71844	71844					0.18154734232689407
YLKFFKHIRKL	11	Unmodified	_YLKFFKHIRKL_					0	0	0		ENSG00000225180|ENST00000637878|PVALEF	ENSG00000225180|ENST00000637878|PVALEF	ENSG00000225180|ENST00000637878|PVALEF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.3099365234375	3	498.309885	1491.90782	0.49721	0.00024776	-0.095527	-4.7602E-05	0.40168	0.00020016	498.3097564769937	91.087	0.87456	91.087	90.591	91.465	0.00046539					161	62	3	0	0	0	0.48173	2	24156	24156;24195		0.50596	0	1	923640			58883	8444	33800	33801	71845;71846	71845					0.18154734232689407
YLKFFKHIRKL	11	Unmodified	_YLKFFKHIRKL_					0	0	0		ENSG00000225180|ENST00000637878|PVALEF	ENSG00000225180|ENST00000637878|PVALEF	ENSG00000225180|ENST00000637878|PVALEF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.3099365234375	3	498.309885	1491.90782	0.46933	0.00023387	-0.011703	-5.8315E-06	0.45762	0.00022804	498.3097682473093	93.397	2.7067	93.397	92.588	95.295	-0.00051117					749	228	4	0	0	0	0.48486	1	25345	25345		0.094841	0	1	2732900			58884	8444	33800	33801	71847	71847					0.18154734232689407
YLKGGIDINT	10	Unmodified	_YLKGGIDINT_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ANK2|p.L2536Ffs*22|1|0.26|ENSG00000145362|chr4:113356220-113356220|C/-|frameshift_variant	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7859497070312	2	547.298039	1092.58152	0.61658	0.00033745	-2.3274	-0.0012738	-1.7108	-0.00093632	547.2975605650367	51.232	0.24597	51.232	51.108	51.354	0					10	8	2	0	0	0	0.30555	1	11914	11914		20.415	0	1	84836			58885	4644	33801	33802	71848	71848					0.0389370826915183
YLKLACLLV	9	Unmodified	_YLKLACLLV_					0	0	0			REV__ENSG00000177938|ENST00000317658|CAPZA3	REV__ENSG00000177938|ENST00000317658|CAPZA3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3173828125	2	518.317189	1034.61982	0.65253	0.00033822	0.052188	2.705E-05	0.70472	0.00036527	518.3169848183154	78.859	0.64073	78.859	78.462	79.103	0					84	25	4	0	0	0	0.32415	1	20391	20391		5.2307	0	1	818310	+		58886	18007	33802	33803	71849	71849					0.10389922650097105
YLKLYYKY	8	Unmodified	_YLKLYYKY_					0	0	0		ENST00000449886.5_1_9:129597815-129598031:+|nuORF	ENST00000449886.5_1_9:129597815-129598031:+|nuORF	ENST00000449886.5_1_9:129597815-129598031:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.3038330078125	2	577.318243	1152.62193	0.36378	0.00021002	-1.7107	-0.00098761	-1.3469	-0.0007776	577.8188473389433	46.973	0.15922	47.026	46.929	47.088	0.052574					8	5	2	0	0	0	0.34092	1	10599	10599		13.508	3.9639	1	107680			58887	10634	33803	33804	71850	71850					0.05172674659547738
YLKMFEDY	8	Unmodified	_YLKMFEDY_					0	0	0		ENSG00000277893|ENST00000622030|SRD5A2	ENSG00000277893|ENST00000622030|SRD5A2	ENSG00000277893|ENST00000622030|SRD5A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.2897338867188	2	554.754618	1107.49468	0.68979	0.00038266	-0.99722	-0.00055321	-0.30743	-0.00017055	554.7536482464616	77.939	0.60042	77.995	77.624	78.224	0.056091					31	21	2	0	0	0	0.34131	1	20046	20046		12.532	6.7711	1	105140			58888	8735	33804	33805	71851	71851					-0.05476414276927244
YLKMRGETK	9	Unmodified	_YLKMRGETK_					0	0	0			REV__ENSG00000109424|ENST00000262999|UCP1	REV__ENSG00000109424|ENST00000262999|UCP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.8033447265625	2	563.307884	1124.60121	0.13429	7.5647E-05	-1.3265	-0.00074722	-1.1922	-0.00067157	563.3074031672448	80.923	1.5473	80.988	80.603	82.15	0.065094					160	71	4	0	0	0	0.25417	1	21222	21222		8.5933	0	1	7066900	+		58889	14637	33805	33806	71852	71852					0.04389761008246751
YLKPDAPIE	9	Unmodified	_YLKPDAPIE_					0	0	0			REV__nc|ENSG00000107099|Q8NF50-4|DOCK8	REV__nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.2996215820312	2	523.281857	1044.54916	0.58751	0.00030743	-0.0049301	-2.5799E-06	0.58258	0.00030485	523.2818133576103	74.239	0.43849	74.239	74.098	74.537	0					20	14	2	0	0	0	0.27532	1	19100	19100		12.532	0.89125	1	265090	+		58890	14543	33806	33807	71853	71853					0.02866920866131295
YLKQDETL	8	Unmodified	_YLKQDETL_					0	0	0			REV__ENSG00000165392|ENST00000298139|WRN	REV__ENSG00000165392|ENST00000298139|WRN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2771911621094	2	505.263665	1008.51278	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.234	1	78.292	77.792	78.792	0.058151								0	0	0	0.34734	1	20221	20221		15.847	0.078963	1		+		58891	17233	33807	33808	71854	71854					0.008860439694331035
YLKQLHAS	8	Unmodified	_YLKQLHAS_					0	0	0			REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.8054504394531	2	480.269084	958.523616	-0.033021	-1.5859E-05	-0.68086	-0.000327	-0.71388	-0.00034286	480.2671073295478	12.334	0.11746	12.237	12.178	12.295	-0.096607					5	3	2	0	0	0	0.34437	1	96	96		0.69038	0	1	3833.2	+		58892	15313	33808	33809	71855	71855					0.042694911343687636
YLKQLLLS	8	Unmodified	_YLKQLLLS_					0	0	0			REV__nc|ENSG00000163554|P02549-2|SPTA1	REV__nc|ENSG00000163554|P02549-2|SPTA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.2640075683594	2	489.305136	976.595718	0.53117	0.00025991	-0.14914	-7.2977E-05	0.38203	0.00018693	489.30489967304777	53.124	0.30004	53.181	53.079	53.379	0.056259					14	10	2	0	0	0	0.34092	1	12497	12497		4.756	0	1	283600	+		58893	17069	33809	33810	71856	71856					0.10648405488097978
YLKQLLLS	8	Unmodified	_YLKQLLLS_					0	0	0			REV__nc|ENSG00000163554|P02549-2|SPTA1	REV__nc|ENSG00000163554|P02549-2|SPTA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	489.305136	976.595718	0.3938	0.00019269	0.31438	0.00015383	0.70818	0.00034652	489.3051909027768	53.229	0.29658	53.229	53.038	53.334	0	0.023982	0.00018212	NaN	4.756	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217350	+		58894	17069	33809	33810							0.10648405488097978
YLKRKHHHLLK	11	Unmodified	_YLKRKHHHLLK_					0	0	0		ENST00000342992.10_3_2:179559630-179560597:-|nuORF	ENST00000342992.10_3_2:179559630-179560597:-|nuORF	ENST00000342992.10_3_2:179559630-179560597:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.63653564453125	3	491.636883	1471.88882	0.38844	0.00019097	-0.84739	-0.00041661	-0.45895	-0.00022564	491.6363368943501	56.881	0.55645	56.96	56.73	57.287	0.078674					45	20	3	0	0	0	0.46554	1	13671	13671		2.6312	0.19645	1	965930			58895	9538	33810	33811	71857	71857					0.17175197661663333
YLKRKHHHLLK	11	Unmodified	_YLKRKHHHLLK_					0	0	0		ENST00000342992.10_3_2:179559630-179560597:-|nuORF	ENST00000342992.10_3_2:179559630-179560597:-|nuORF	ENST00000342992.10_3_2:179559630-179560597:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.6363220214844	3	491.636883	1471.88882	0.43489	0.00021381	-0.94149	-0.00046287	-0.5066	-0.00024906	491.63627592455293	57.082	0.5767	57.063	56.809	57.386	-0.019081					51	20	4	0	0	0	0.46554	1	13739	13739		2.6312	0.19645	1	804280			58896	9538	33810	33811	71858	71858					0.17175197661663333
YLKSNTVICR	10	Unmodified	_YLKSNTVICR_					0	0	0			REV__nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	REV__nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.3302612304688	2	598.82644	1195.63833	0.98277	0.00058851	0.7038	0.00042145	1.6866	0.00101	599.3289077038565	56.504	1.8774	56.485	55.349	57.227	-0.019077					238	68	5	0	0	0	0.37133	1	13674	13674		8.7454	0	1	6939100	+		58897	22990	33811	33812	71859	71859					0.048334325540054124
YLKTEYRPL	9	Unmodified	_YLKTEYRPL_					0	0	0		ENST00000533453.5_1_6:117824949-117853459:+|nuORF	ENST00000533453.5_1_6:117824949-117853459:+|nuORF	ENST00000533453.5_1_6:117824949-117853459:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.262939453125	2	591.829506	1181.64446	0.40244	0.00023818	-0.28261	-0.00016725	0.11983	7.0921E-05	591.8291699314558	68.283	1.7794	68.354	67.622	69.401	0.071945					105	64	2	0	0	0	0.25323	1	17154	17154		10.074	10.074	1	318980			58898	11650	33812	33813	71860	71860					0.060902740572146286
YLKTYQEEGE	10	Unmodified	_YLKTYQEEGE_					0	0	0		ENSG00000240694|ENST00000522362|PNMA2	ENSG00000240694|ENST00000522362|PNMA2	ENSG00000240694|ENST00000522362|PNMA2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.2935791015625	2	630.29315	1258.57175	0.42513	0.00026796	0.75193	0.00047394	1.1771	0.0007419	630.2936119548464	53.319	0.81154	53.31	53.004	53.815	-0.0096054					81	30	4	0	0	0	0.21644	1	12586	12586		30.637	4.3684	1	2291500			58899	8523	33813	33814	71861	71861					-0.04719524526899477
YLKVFTGNF	9	Unmodified	_YLKVFTGNF_					0	0	0			REV__ENST00000397636.2_1_7:99737498-99738123:-|nuORF	REV__ENST00000397636.2_1_7:99737498-99738123:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7931518554688	2	544.792392	1087.57023	0.46456	0.00025309	0.39604	0.00021576	0.8606	0.00046885	544.7926620560944	68.112	2.4408	68.112	67.479	69.92	0					263	88	6	0	0	0	0.0085732	5	17239	17096;17239;17352;17402;17649		81.613	25.072	1	20208000	+		58900	20675	33814	33815	71862;71863;71864;71865;71866	71863					0.0299493096565584
YLKVFTGNF	9	Unmodified	_YLKVFTGNF_					0	0	0			REV__ENST00000397636.2_1_7:99737498-99738123:-|nuORF	REV__ENST00000397636.2_1_7:99737498-99738123:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.79296875	2	544.792392	1087.57023	0.63275	0.00034472	0.22211	0.000121	0.85486	0.00046572	544.7925512866735	68.022	4.266	68.1	67.461	71.727	0.078041					337	153	5	0	0	0	0.027237	10	17050	17050;17097;17140;17185;17234;17289;17345;17396;17618;17770		61.357	14.117	1	18546000	+		58901	20675	33814	33815	71867;71868;71869;71870;71871;71872;71873;71874;71875;71876	71867					0.0299493096565584
YLKVFTGNF	9	Unmodified	_YLKVFTGNF_					0	0	0			REV__ENST00000397636.2_1_7:99737498-99738123:-|nuORF	REV__ENST00000397636.2_1_7:99737498-99738123:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7930908203125	2	544.792392	1087.57023	0.64455	0.00035115	0.19643	0.00010702	0.84098	0.00045816	544.7925558762294	68.127	5.2459	68.107	67.448	72.694	-0.019157					359	188	6	0	0	0	0.027237	7	17135	17135;17228;17276;17327;17343;17392;17465		61.357	14.437	1	21422000	+		58902	20675	33814	33815	71877;71878;71879;71880;71881;71882;71883	71877					0.0299493096565584
YLKVFTGNF	9	Unmodified	_YLKVFTGNF_					0	0	0			REV__ENST00000397636.2_1_7:99737498-99738123:-|nuORF	REV__ENST00000397636.2_1_7:99737498-99738123:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7918090820312	2	544.792392	1087.57023	0.69407	0.00037812	-0.064373	-3.507E-05	0.62969	0.00034305	544.792101617097	75.807	2.3996	75.776	74.786	77.186	-0.031479					130	88	2	0	0	0	0.25989	1	19303	19303		14.838	0.25658	1	464200	+		58903	20675	33814	33815	71884	71884					0.0299493096565584
YLKVHMDNI	9	Unmodified	_YLKVHMDNI_					0	0	0		ENST00000505484.5_1_4:121616268-121652778:-|nuORF;nc|ENSG00000138738|Q9NQX1-2|PRDM5;ENSG00000138738|ENST00000264808|PRDM5	ENST00000505484.5_1_4:121616268-121652778:-|nuORF	ENST00000505484.5_1_4:121616268-121652778:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.3297729492188	2	566.794609	1131.57467	0.43458	0.00024632	0.718	0.00040696	1.1526	0.00065328	567.2959671026333	37.402	0.6552	37.489	37.275	37.93	0.087406					55	23	4	0	0	0	0.25879	1	7778	7778		4.756	0	1	297650			58904	4184	33815	33816	71885	71885					0.014140721169269455
YLKVHMDNI	9	Unmodified	_YLKVHMDNI_					0	0	0		ENST00000505484.5_1_4:121616268-121652778:-|nuORF;nc|ENSG00000138738|Q9NQX1-2|PRDM5;ENSG00000138738|ENST00000264808|PRDM5	ENST00000505484.5_1_4:121616268-121652778:-|nuORF	ENST00000505484.5_1_4:121616268-121652778:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	566.794609	1131.57467	0.65063	0.00036878	0.43469	0.00024638	1.0853	0.00061516	566.7950809094491	37.457	0.61305	37.457	37.233	37.846	0	-0.010321	-0.00042196	NaN	2.0598	62	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382790			58905	4184	33815	33816							0.014140721169269455
YLKVKEPIF	9	Unmodified	_YLKVKEPIF_					0	0	0		ENST00000527508.1_1_11:76637608-76709863:+|nuORF;ENST00000530334.5_1_11:76579304-76726162:+|nuORF;ACER3|p.V258Dfs*8|1|0.05|ENSG00000078124|chr11:77020295-77020296|-/ATATCAGAGAGTATTTTTAT|frameshift_variant;ENSG00000078124|ENST00000532485|ACER3;ACER3|p.I259Sfs*10|1|0.03|ENSG00000078124|chr11:77020297-77020298|-/AGTTTATTTAAATTTATTA|frameshift_variant	ENST00000527508.1_1_11:76637608-76709863:+|nuORF	ENST00000527508.1_1_11:76637608-76709863:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.8291625976562	2	568.839342	1135.66413	0.27363	0.00015565	-0.41334	-0.00023512	-0.13971	-7.9475E-05	568.8391347123192	73.177	1.4667	73.231	72.681	74.148	0.053833					185	52	5	0	0	0	0.26879	1	18542	18542		13.508	1.8676	1	5714500			58906	4	33816	33817	71886	71886					0.10172650067943323
YLKVSNTYLFE	11	Unmodified	_YLKVSNTYLFE_					0	0	0			REV__nc|ENSG00000222009|C9JJ37-2|BTBD19	REV__nc|ENSG00000222009|C9JJ37-2|BTBD19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.79217529296875	3	459.574732	1375.70237	0.15908	7.311E-05	0.32296	0.00014842	0.48204	0.00022154	459.9093253228878	58.615	0.43115	58.706	58.418	58.849	0.091305					17	14	2	0	0	0	0.3322	1	14173	14173		4.7159	1.1289	1	120140	+		58907	19103	33817	33818	71887	71887					0.029544911919401784
YLKWIQNYF	9	Unmodified	_YLKWIQNYF_					0	0	0		ENST00000315554.12_3_1:22379221-22404982:+|nuORF;ENST00000344548.7_3_1:22379221-22404982:+|nuORF	ENST00000315554.12_3_1:22379221-22404982:+|nuORF	ENST00000315554.12_3_1:22379221-22404982:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	637.8338623046875	2	637.832049	1273.64954	0.3454	0.0002203	2.048	0.0013063	2.3934	0.0015266	637.8329678564041	67.922	0.65257	67.922	67.623	68.275	0					41	23	4	0	0	0	0.27532	1	17123	17123		12.532	2.381	1	303030			58908	9353	33818	33819	71888	71888					0.02366577919769952
YLKWQVVIN	9	Unmodified	_YLKWQVVIN_					0	0	0			REV__LYST|p.F1726Lfs*2|1|0.35|ENSG00000143669|chr1:235780901-235780901|A/-|frameshift_variant	REV__LYST|p.F1726Lfs*2|1|0.35|ENSG00000143669|chr1:235780901-235780901|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3339233398438	2	581.834591	1161.65463	0.090238	5.2504E-05	0.76639	0.00044592	0.85663	0.00049842	581.8349957347098	23.324	0.30698	23.324	23.173	23.48	0					14	10	2	0	0	0	0.26168	1	3425	3425		1.8442	0.19162	1	71078	+		58909	16193	33819	33820	71889	71889					0.0802688178241624
YLKYHRIFTHH	11	Unmodified	_YLKYHRIFTHH_					0	0	0			REV__ENSG00000171060|ENST00000304519|C8orf74	REV__ENSG00000171060|ENST00000304519|C8orf74	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.2771301269531	3	505.60536	1513.79425	0.42569	0.00021523	-1.2511	-0.00063258	-0.82544	-0.00041735	505.604875112866	48.996	0.43813	48.996	48.883	49.321	0					25	15	2	0	0	0	0.33236	1	11336	11336		4.4062	3.0765	1	265790	+		58910	17617	33820	33821	71890	71890					0.057906391196183904
YLKYHRIFTHH	11	Unmodified	_YLKYHRIFTHH_					0	0	0			REV__ENSG00000171060|ENST00000304519|C8orf74	REV__ENSG00000171060|ENST00000304519|C8orf74	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.27716064453125	3	505.60536	1513.79425	0.27618	0.00013964	-1.3173	-0.00066601	-1.0411	-0.00052637	505.93873987905164	49.06	0.4092	49.105	49.016	49.425	0.044891					23	14	2	0	0	0	0.33236	1	11359	11359		4.4062	3.0765	1	289120	+		58911	17617	33820	33821	71891	71891					0.057906391196183904
YLKYRTYNK	9	Unmodified	_YLKYRTYNK_					0	0	0			REV__nc|ENSG00000198521|P17038-2|ZNF43	REV__nc|ENSG00000198521|P17038-2|ZNF43	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.8439331054688	2	624.840405	1247.66626	-0.0071769	-4.4844E-06	4.3565	0.0027221	4.3493	0.0027176	624.8430790875217	12.253	0.3271	12.253	12.171	12.498	0					28	10	5	0	0	0	0.26257	1	79	79		0.52476	0.066424	1	73832	+		58912	18829	33821	33822	71892	71892					0.05233078805736113
YLKYRTYNK	9	Unmodified	_YLKYRTYNK_					0	0	0			REV__nc|ENSG00000198521|P17038-2|ZNF43	REV__nc|ENSG00000198521|P17038-2|ZNF43	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	624.840405	1247.66626	-0.22816	-0.00014256	4.8094	0.0030051	4.5813	0.0028626	624.843386521429	12.26	0.25176	12.163	12.072	12.324	-0.096607	-0.045296	-9.7966E-05	NaN	0.52476	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63234	+		58913	18829	33821	33822							0.05233078805736113
YLKYRTYNK	9	Unmodified	_YLKYRTYNK_					0	0	0			REV__nc|ENSG00000198521|P17038-2|ZNF43	REV__nc|ENSG00000198521|P17038-2|ZNF43	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	624.840405	1247.66626	-0.25462	-0.0001591	5.1568	0.0032222	4.9022	0.0030631	624.8437677003863	12.277	0.26498	12.209	12.14	12.405	-0.06806	0.00067773	0.00033613	NaN	0.52476	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70788	+		58914	18829	33821	33822							0.05233078805736113
YLLARQETL	9	Unmodified	_YLLARQETL_					0	0	0			REV__ENSG00000196663|ENST00000359520|TECPR2	REV__ENSG00000196663|ENST00000359520|TECPR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2518920898438	2	553.813856	1105.61316	0.073092	4.0479E-05	0.69057	0.00038245	0.76366	0.00042292	553.8143516504113	51.992	0.18372	51.991	51.876	52.06	-0.00080872					9	6	2	0	0	0	0.24688	1	12166	12166		14.838	0	1	103070	+		58915	18675	33822	33823	71893	71893					0.06457701023100526
YLLDGYSLDSC	11	Unmodified	_YLLDGYSLDSC_					0	0	0			REV__nc|ENSG00000292363|Q9HC73-2|CRLF2	REV__nc|ENSG00000292363|Q9HC73-2|CRLF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.33447265625	2	624.776279	1247.538	0.52975	0.00033098	0.78445	0.0004901	1.3142	0.00082108	624.7766146075047	86.469	1.0365	86.469	85.989	87.025	0					67	40	3	0	0	0	0.30217	1	22851	22851		24.021	10.978	1	165230	+		58916	19000	33823	33824	71894	71894					-0.07586269290277414
YLLDGYSLDSC	11	Unmodified	_YLLDGYSLDSC_					0	0	0			REV__nc|ENSG00000292363|Q9HC73-2|CRLF2	REV__nc|ENSG00000292363|Q9HC73-2|CRLF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.3349609375	2	624.776279	1247.538	0.34388	0.00021485	0.85615	0.0005349	1.2	0.00074975	624.77673281818	86.665	1.1126	86.659	85.965	87.078	-0.0056229					74	42	2	0	0	0	0.32293	1	22840	22840		18.146	7.3224	1	181580	+		58917	19000	33823	33824	71895	71895					-0.07586269290277414
YLLDITEEDC	10	Unmodified	_YLLDITEEDC_					0	0	0		ENST00000488673.6_1_9:37763841-37777701:+|nuORF;nc|ENSG00000165275|Q6PF06-2|TRMT10B;nc|ENSG00000165275|Q6PF06-4|TRMT10B;ENSG00000165275|ENST00000297994|TRMT10B	ENST00000488673.6_1_9:37763841-37777701:+|nuORF	ENST00000488673.6_1_9:37763841-37777701:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.246826171875	3	405.181283	1212.52202	-0.11357	-4.6015E-05	-0.48763	-0.00019758	-0.60119	-0.00024359	405.18089051956576	17.044	0.58473	17.044	16.867	17.452	0					40	20	3	0	0	0	0.32009	1	1554	1554		1.9064	0	1	44090			58918	5944	33824	33825	71896	71896					-0.07573975527202492
YLLDTLNIF	9	Unmodified	_YLLDTLNIF_					0	0	0			REV__nc|ENSG00000177731|Q13045-3|FLII	REV__nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3048095703125	2	556.305332	1110.59611	0.19905	0.00011073	0.018207	1.0129E-05	0.21726	0.00012086	556.305112585648	93.46	0.71117	93.46	93.232	93.943	0					175	60	4	0	0	0	0.16283	2	24950	24852;24950		29.082	0	1	615010	+		58919	18003	33825	33826	71897;71898	71898					0.045237804172757023
YLLDTLNIF	9	Unmodified	_YLLDTLNIF_					0	0	0			REV__nc|ENSG00000177731|Q13045-3|FLII	REV__nc|ENSG00000177731|Q13045-3|FLII	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7962646484375	2	556.305332	1110.59611	0.55099	0.00030652	1.5236	0.00084759	2.0746	0.0011541	556.3056525909958	84.54	0.43571	84.54	84.256	84.691	0					21	15	2	0	0	0	0.23783	1	22127	22127		18.135	2.2878	1	213250	+		58920	18003	33825	33826	71899	71899					0.045237804172757023
YLLDTLNIF	9	Unmodified	_YLLDTLNIF_					0	0	0			REV__nc|ENSG00000177731|Q13045-3|FLII	REV__nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.3052978515625	2	556.305332	1110.59611	0.27773	0.0001545	0.023407	1.3021E-05	0.30113	0.00016752	556.3050547496492	93.342	0.64217	93.429	93.188	93.83	0.086678					163	53	5	0	0	0	0.063853	1	24911	24911		47.749	0	1	960970	+		58921	18003	33825	33826	71900	71900					0.045237804172757023
YLLDTLNIF	9	Unmodified	_YLLDTLNIF_					0	0	0			REV__nc|ENSG00000177731|Q13045-3|FLII	REV__nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.30517578125	2	556.305332	1110.59611	0.3795	0.00021112	-0.41797	-0.00023252	-0.038467	-2.14E-05	556.304965457233	93.455	0.69459	93.455	93.2	93.895	-0.00051117					150	58	3	0	0	0	0.063853	1	24839	24839		47.749	0	1	965160	+		58922	18003	33825	33826	71901	71901					0.045237804172757023
YLLDTLNIF	9	Unmodified	_YLLDTLNIF_					0	0	0			REV__nc|ENSG00000177731|Q13045-3|FLII	REV__nc|ENSG00000177731|Q13045-3|FLII	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	556.305332	1110.59611	0.55418	0.00030829	1.5636	0.00086983	2.1178	0.0011781	556.3060656821374	84.463	0.3763	84.54	84.32	84.696	0.077095	0.00017659	1.3054E-05	NaN	18.135	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137640	+		58923	18003	33825	33826							0.045237804172757023
YLLECPSAEVR	11	Unmodified	_YLLECPSAEVR_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.3197631835938	2	640.321188	1278.62782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.971	1	81.971	81.471	82.471	0								0	0	0	0.35283	1	21377	21377		7.609	1.8771	1				58924	3159;2560	33826	33827	71902	71902					-0.000345948910990046
YLLEEAQVR	9	Unmodified	_YLLEEAQVR_					0	0	0		chr11:58927902-58943543|113|10.91|0.26|5.37|+|2|TE_info:HERVK22-int,HERVK22-int_dup314,ERVK,LTR,donor,-,58927657,58927902|None,GLYATL1|7	chr11:58927902-58943543|113|10.91|0.26|5.37|+|2|TE_info:HERVK22-int,HERVK22-int_dup314,ERVK,LTR,donor,-,58927657,58927902|None,GLYATL1|7	chr11:58927902-58943543|113|10.91|0.26|5.37|+|2|TE_info:HERVK22-int,HERVK22-int_dup314,ERVK,LTR,donor,-,58927657,58927902|None,GLYATL1|7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8529663085938	2	560.803488	1119.59242	0.30976	0.00017372	-0.4611	-0.00025859	-0.15134	-8.4871E-05	560.8035351349264	47.078	0.39841	47.131	46.955	47.354	0.052574					36	14	3	0	0	0	0.24311	1	10624	10624		16.942	4.7016	1	545170			58925	127	33827	33828	71903	71903					0.03741110643431966
YLLEILILM	9	Unmodified	_YLLEILILM_					0	0	0		ENST00000520248.1_1_8:79672597-79674655:-|nuORF	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7474365234375	2	560.837954	1119.66135	0.44639	0.00025035	-0.23543	-0.00013204	0.21097	0.00011832	560.8379515306771	85.972	0.69883	85.963	85.535	86.234	-0.0090027					44	25	2	0	0	0	0.25811	1	22599	22599		5.2307	0	1	178370			58926	11471	33828	33829	71904	71904					0.10631058618787392
YLLEILILM	9	Unmodified	_YLLEILILM_					0	0	0		ENST00000520248.1_1_8:79672597-79674655:-|nuORF	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	560.837954	1119.66135	0.48289	0.00027082	-0.27239	-0.00015277	0.2105	0.00011806	560.837908795513	85.99	0.71697	85.99	85.609	86.326	0	0.016966	-4.6343E-05	NaN	2.3027	47	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174310			58927	11471	33828	33829							0.10631058618787392
YLLEILILM	9	Unmodified	_YLLEILILM_					0	0	0		ENST00000520248.1_1_8:79672597-79674655:-|nuORF	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	ENST00000520248.1_1_8:79672597-79674655:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	560.837954	1119.66135	0.47753	0.00026782	-0.13254	-7.4333E-05	0.34499	0.00019348	560.8380335925775	85.882	0.67471	85.966	85.641	86.315	0.084251	-0.0072694	0.00011052	NaN	2.3027	42	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178560			58928	11471	33828	33829							0.10631058618787392
YLLFFLEL	8	Unmodified	_YLLFFLEL_					0	0	0			REV__ENST00000295958.9_2_4:39553614-39553689:-|nuORF	REV__ENST00000295958.9_2_4:39553614-39553689:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.2427368164062	2	529.302062	1056.58957	0.26403	0.00013975	-3.3431	-0.0017695	-3.0791	-0.0016298	529.3000186007688	73.854	0.097626	73.854	73.795	73.893	0					4	2	2	0	0	0	0.29855	1	18896	18896		32.117	0	1	107490	+		58929	19783	33829	33830	71905	71905					0.06353887256545931
YLLFFPALL	9	Unmodified	_YLLFFPALL_					0	0	0		nc|ENSG00000177669|Q96T53-2|MBOAT4;ENSG00000177669|ENST00000320542|MBOAT4	nc|ENSG00000177669|Q96T53-2|MBOAT4	nc|ENSG00000177669|Q96T53-2|MBOAT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2880249023438	2	548.825704	1095.63685	0.66603	0.00036553	2.2036	0.0012094	2.8696	0.0015749	548.8271799304471	52.657	0.21898	52.708	52.603	52.822	0.050575					9	7	2	0	0	0	0.22431	1	12363	12363		20.871	6.2895	1	91108			58930	7006	33830	33831	71906	71906					0.0928616652756773
YLLFPNSLS	9	Unmodified	_YLLFPNSLS_					0	0	0		ENSG00000161798|ENST00000293599|AQP5	ENSG00000161798|ENST00000293599|AQP5	ENSG00000161798|ENST00000293599|AQP5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.8712158203125	2	527.2844	1052.55425	0.52527	0.00027696	2.4928	0.0013144	3.018	0.0015914	527.2857350566923	62.57	0.38417	62.667	62.471	62.855	0.096985					19	13	2	0	0	0	0.1939	1	15385	15385		24.021	0	1	134760			58931	5529	33831	33832	71907	71907					0.030072247287534992
YLLFQSEEF	9	Unmodified	_YLLFQSEEF_					0	0	0		ENST00000475506.1_1_1:17354162-17371284:-|nuORF	ENST00000475506.1_1_1:17354162-17371284:-|nuORF	ENST00000475506.1_1_1:17354162-17371284:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8162841796875	2	588.284597	1174.55464	0.3617	0.00021278	-0.096805	-5.6949E-05	0.2649	0.00015583	588.284347705456	68.252	0.388	68.252	68.074	68.462	0					32	14	3	0	0	0	0.22596	1	17198	17198		21.747	3.6117	1	464510			58932	10935	33832	33833	71908	71908					-0.025654003420640947
YLLGAISVLF	10	Unmodified	_YLLGAISVLF_					0	0	0			REV__nc|ENSG00000149541|O94766-2|B3GAT3	REV__nc|ENSG00000149541|O94766-2|B3GAT3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.269775390625	2	548.326068	1094.63758	1.034	0.00056698	-3.663	-0.0020085	-2.6289	-0.0014415	548.82631798422	50.23	0.20967	50.25	50.177	50.387	0.020691					10	7	2	0	0	0	0.29519	1	11622	11622		21.747	5.8995	1	125690	+		58933	16475	33833	33834	71909	71909					0.09404961176596771
YLLGAISVLF	10	Unmodified	_YLLGAISVLF_					0	0	0			REV__nc|ENSG00000149541|O94766-2|B3GAT3	REV__nc|ENSG00000149541|O94766-2|B3GAT3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	548.326068	1094.63758	0.52275	0.00028664	-2.3605	-0.0012943	-1.8378	-0.0010077	548.3239278271228	50.18	0.13945	50.18	50.077	50.217	0	-0.035279	0.0007055	NaN	15.847	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118940	+		58934	16475	33833	33834							0.09404961176596771
YLLGLTQK	8	Unmodified	_YLLGLTQK_					0	0	0		nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2	nc|ENSG00000231852|P08686-2|CYP21A2	nc|ENSG00000231852|P08686-2|CYP21A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.26708984375	2	468.28166	934.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.648	1	76.648	76.148	77.148	0								0	0	0	0.3683	1	19747	19747		6.3541	1.1234	1				58935	8472	33834	33835	71910	71910					0.07887545936944207
YLLGLTQK	8	Unmodified	_YLLGLTQK_					0	0	0		nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2	nc|ENSG00000231852|P08686-2|CYP21A2	nc|ENSG00000231852|P08686-2|CYP21A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	468.2671813964844	2	468.28166	934.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.808	1	76.808	76.308	77.308	0								0	0	0	0.35779	1	19795	19795		11.114	1.767	1				58936	8472	33834	33835	71911	71911					0.07887545936944207
YLLHLSLFFP	10	Unmodified	_YLLHLSLFFP_					0	0	0		ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.3350830078125	2	625.352617	1248.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.288	1	86.288	85.788	86.788	0								0	0	0	0.35542	1	22704	22704		12.532	3.1484	1				58937	11641	33835	33836	71912	71912					0.0762833895928452
YLLHLSLFFP	10	Unmodified	_YLLHLSLFFP_					0	0	0		ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.335205078125	2	625.352617	1248.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.438	1	86.438	85.938	86.938	0								0	0	0	0.35542	1	22750	22750		12.532	3.7861	1				58938	11641	33835	33836	71913	71913					0.0762833895928452
YLLHLSLFFP	10	Unmodified	_YLLHLSLFFP_					0	0	0		ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.3348388671875	2	625.352617	1248.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.136	1	86.22	85.72	86.72	0.084251								0	0	0	0.35542	1	22649	22649		12.532	2.4576	1				58939	11641	33835	33836	71914	71914					0.0762833895928452
YLLHLSLFFP	10	Unmodified	_YLLHLSLFFP_					0	0	0		ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.3352661132812	2	625.352617	1248.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.283	1	86.368	85.868	86.868	0.084251								0	0	0	0.35542	1	22694	22694		12.532	4.6214	1				58940	11641	33835	33836	71915	71915					0.0762833895928452
YLLHLSLFFP	10	Unmodified	_YLLHLSLFFP_					0	0	0		ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.3347778320312	2	625.352617	1248.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.442	1	86.526	86.026	87.026	0.084251								0	0	0	0.3664	1	22743	22743		7.9102	1.7044	1				58941	11641	33835	33836	71916	71916					0.0762833895928452
YLLHLSLFFP	10	Unmodified	_YLLHLSLFFP_					0	0	0		ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.335205078125	2	625.352617	1248.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.595	1	86.679	86.179	87.179	0.084251								0	0	0	0.35542	1	22790	22790		12.532	2.4576	1				58942	11641	33835	33836	71917	71917					0.0762833895928452
YLLHLSLFFP	10	Unmodified	_YLLHLSLFFP_					0	0	0		ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.3348388671875	2	625.352617	1248.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.2	1	86.191	85.691	86.691	-0.0090027								0	0	0	0.35542	1	22660	22660		12.532	2.4576	1				58943	11641	33835	33836	71918	71918					0.0762833895928452
YLLHLSLFFP	10	Unmodified	_YLLHLSLFFP_					0	0	0		ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.3345947265625	2	625.352617	1248.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.347	1	86.338	85.838	86.838	-0.0090027								0	0	0	0.35542	1	22705	22705		12.532	4.6214	1				58944	11641	33835	33836	71919	71919					0.0762833895928452
YLLHLSLFFP	10	Unmodified	_YLLHLSLFFP_					0	0	0		ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.3348388671875	2	625.352617	1248.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.54	1	86.531	86.031	87.031	-0.0090027								0	0	0	0.35542	1	22764	22764		12.532	2.4576	1				58945	11641	33835	33836	71920	71920					0.0762833895928452
YLLHQPHIL	9	Unmodified	_YLLHQPHIL_					0	0	0			REV__ENST00000520378.1_1_5:150518646-150537284:-|nuORF	REV__ENST00000520378.1_1_5:150518646-150537284:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.8292846679688	2	567.326934	1132.63931	0.14648	8.3104E-05	0.49172	0.00027897	0.6382	0.00036207	567.8292244261291	51.745	1.0704	51.754	51.272	52.343	0.0095634					106	39	4	0	0	0	0.11517	1	12123	12123		36.044	12.896	1	1300900	+		58946	21883	33836	33837	71921	71921					0.07830014985233902
YLLHVATTQP	10	Unmodified	_YLLHVATTQP_					0	0	0		ENSG00000178084|ENST00000318351|HTR3C	ENSG00000178084|ENST00000318351|HTR3C	ENSG00000178084|ENST00000318351|HTR3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.3026733398438	2	571.813856	1141.61316	0.68304	0.00039057	-1.2001	-0.00068624	-0.51707	-0.00029567	571.8137488693461	37.411	0.13408	37.411	37.369	37.503	0					6	4	2	0	0	0	0.28569	1	7728	7728		26.268	2.2476	1	119320			58947	7036	33837	33838	71922	71922					0.04801701023075111
YLLICLELV	9	Unmodified	_YLLICLELV_					0	0	0			REV__nc|ENSG00000215193|Q7Z412-2|PEX26	REV__nc|ENSG00000215193|Q7Z412-2|PEX26	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.7879638671875	2	539.814479	1077.6144	0.58084	0.00031355	3.1331	0.0016913	3.714	0.0020048	539.816545396107	53.097	0.35788	53.087	52.889	53.247	-0.0096054					19	12	2	0	0	0	0.21137	1	12479	12479		24.674	7.7316	1	279730	+		58948	19076	33838	33839	71923	71923					0.07870199067610884
YLLIDNGSLL	10	Unmodified	_YLLIDNGSLL_					0	0	0			REV__ENSG00000177558|ENST00000324675|FAM187B	REV__ENSG00000177558|ENST00000324675|FAM187B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8059692382812	2	560.816064	1119.61758	0.35359	0.0001983	0.7364	0.00041299	1.09	0.00061129	560.8163200324256	71.636	0.6116	71.608	71.397	72.009	-0.027275					42	21	3	0	0	0	0.21644	1	18320	18320		30.637	3.0077	1	588490	+		58949	17997	33839	33840	71924	71924					0.06255165445986677
YLLKTLLQM	9	Unmodified	_YLLKTLLQM_					0	0	0		nc|ENSG00000154134|Q96MS0-2|ROBO3;ENSG00000154134|ENST00000397801|ROBO3	nc|ENSG00000154134|Q96MS0-2|ROBO3	nc|ENSG00000154134|Q96MS0-2|ROBO3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2667846679688	2	561.833203	1121.65185	0.38652	0.00021716	-2.7582	-0.0015497	-2.3717	-0.0013325	561.831453976058	70.486	0.3911	70.547	70.299	70.69	0.060783					24	13	3	0	0	0	0.23783	1	17798	17798		18.135	4.6271	1	155210			58950	5107	33840	33841	71925	71925					0.09589290333246936
YLLLFRIIGM	10	Unmodified	_YLLLFRIIGM_					0	0	0			REV__ENST00000476571.1_1_6:124443035-124712010:+|nuORF	REV__ENST00000476571.1_1_6:124443035-124712010:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.86962890625	2	619.87012	1237.72569	0.16663	0.00010329	-0.82629	-0.00051219	-0.65965	-0.0004089	619.8689631731354	92.921	1.0228	92.921	92.557	93.58	0					123	87	2	0	0	0	0.39745	1	24706	24706		3.9444	2.1002	1	134500	+		58951	21427	33841	33842	71926	71926					0.11633258495567134
YLLLFRIIGM	10	Unmodified	_YLLLFRIIGM_					0	0	0			REV__ENST00000476571.1_1_6:124443035-124712010:+|nuORF	REV__ENST00000476571.1_1_6:124443035-124712010:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	619.8695068359375	2	619.87012	1237.72569	0.34657	0.00021483	-0.59612	-0.00036952	-0.24955	-0.00015469	619.8690821493483	92.993	0.72929	92.993	92.509	93.238	0.00046539					92	60	2	0	0	0	0.40888	1	24698	24698		1.8442	1.8442	1	203910	+		58952	21427	33841	33842	71927	71927					0.11633258495567134
YLLLHSLREAL	11	Unmodified	_YLLLHSLREAL_					0	0	0		nc|ENSG00000144712|O75155-2|CAND2;ENSG00000144712|ENST00000456430|CAND2	nc|ENSG00000144712|O75155-2|CAND2	nc|ENSG00000144712|O75155-2|CAND2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	443.7532653808594	3	443.2626	1326.76597	0.8872	0.00039326	-0.74278	-0.00032925	0.14442	6.4017E-05	443.2622594621396	47.204	0.66753	47.258	47.064	47.731	0.054375					65	24	4	0	0	0	0.33236	1	10783	10783		4.4062	4.4062	1	1012700			58953	4605	33842	33843	71928	71928					0.11565896419710953
YLLLMLDIL	9	Unmodified	_YLLLMLDIL_					0	0	0			REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF	REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8300170898438	2	553.830129	1105.6457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.345	1	90.345	89.845	90.845	0								0	0	0	0.24311	1	23944	23944		8.5933	0	1		+		58954	21520	33843	33844	71929	71929					0.09710772101743714
YLLLMLDIL	9	Unmodified	_YLLLMLDIL_					0	0	0			REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF	REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8294067382812	2	553.830129	1105.6457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.441	1	90.441	89.941	90.941	0.0003891								0	0	0	0.24077	1	23961	23961		9.3474	0	1		+		58955	21520	33843	33844	71930	71930					0.09710772101743714
YLLLMLDIL	9	Unmodified	_YLLLMLDIL_					0	0	0			REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF	REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8302001953125	2	553.830129	1105.6457	0.43204	0.00023928	-0.71863	-0.000398	-0.28658	-0.00015872	553.8293879873041	90.898	0.79152	90.898	90.157	90.948	0.0003891					81	58	2	0	0	0	0.24739	1	23914	23914		13.508	0	1	181500	+		58956	21520	33843	33844	71931	71931					0.09710772101743714
YLLLMLDIL	9	Unmodified	_YLLLMLDIL_					0	0	0			REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF	REV__ENST00000483636.5_1_3:151488357-151501690:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.830129	1105.6457	0.38784	0.0002148	-0.96459	-0.00053422	-0.57675	-0.00031942	553.8293040302883	90.666	0.42863	90.757	90.481	90.909	0.090675	-0.070798	-0.00015547	NaN	13.508	50	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154280	+		58957	21520	33843	33844							0.09710772101743714
YLLLQKVFGS	10	Unmodified	_YLLLQKVFGS_					0	0	0			REV__TRIP12|p.I1368Yfs*4|1|0.34|ENSG00000153827|chr2:229791954-229791955|-/A|frameshift_variant	REV__TRIP12|p.I1368Yfs*4|1|0.34|ENSG00000153827|chr2:229791954-229791955|-/A|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.356689453125	2	584.342249	1166.66995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.356	1	85.437	84.937	85.937	0.080887								0	0	0	0.36787	1	22410	22410		7.2892	0	1		+		58958	16636	33844	33845	71932	71932					0.09327748579607942
YLLLSLKFF	9	Unmodified	_YLLLSLKFF_					0	0	0		ENST00000054666.10_1_1:7839766-7839817:+|nuORF	ENST00000054666.10_1_1:7839766-7839817:+|nuORF	ENST00000054666.10_1_1:7839766-7839817:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.80517578125	2	572.344261	1142.67397	0.12364	7.0764E-05	1.5139	0.0008665	1.6376	0.00093726	572.8470771688854	43.087	0.67032	43.171	42.793	43.463	0.083996					47	24	3	0	0	0	0.2451	1	9412	9412		10.824	4.1008	1	348460			58959	8772	33845	33846	71933	71933					0.10833838073313018
YLLLSLLMI	9	Unmodified	_YLLLSLLMI_					0	0	0		ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	ENSG00000111897|ENST00000339697|SERINC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3316650390625	2	539.832672	1077.65079	0.6996	0.00037767	-1.2207	-0.000659	-0.52114	-0.00028133	539.8324598518252	84.86	2.1187	84.86	84.186	86.305	0					187	80	4	0	0	0	0.29662	1	22204	22204		9.3474	4.1168	1	1269400			58960	2401	33846	33847	71934	71934					0.11507075964345859
YLLLSMVKL	9	Unmodified	_YLLLSMVKL_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-3|NF1;nc|ENSG00000196712|P21359-5|NF1;NF1|p.R1534Hfs*40|1|0.38|ENSG00000196712|chr17:31261734-31261734|G/-|frameshift_variant;ENST00000495910.6_1_17:29490228-29576996:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7770385742188	2	540.330296	1078.64604	0.68601	0.00037067	0.5766	0.00031155	1.2626	0.00068223	540.3302714905396	60.554	0.78588	60.554	60.065	60.851	0					61	28	3	0	0	0	0.09064	1	14747	14747		47.749	3.8904	1	1566300			58961	7899	33847	33848	71935	71935					0.10986191821598368
YLLNAQPLL	9	Unmodified	_YLLNAQPLL_					0	0	0		ENST00000006053.6_2_16:57417041-57417284:+|nuORF	ENST00000006053.6_2_16:57417041-57417284:+|nuORF	ENST00000006053.6_2_16:57417041-57417284:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.2832641601562	2	522.808042	1043.60153	0.45598	0.00023839	-1.2941	-0.00067656	-0.83811	-0.00043817	522.8074167248046	62.652	0.3634	62.644	62.441	62.804	-0.0085526					24	13	2	0	0	0	0.21905	1	15496	15496		23.148	0	1	295140			58962	8767	33848	33849	71936	71936					0.08147503999771288
YLLPPIVLE	9	Unmodified	_YLLPPIVLE_					0	0	0		ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8217163085938	2	528.820618	1055.62668	0.35628	0.00018841	1.038	0.00054893	1.3943	0.00073733	528.8213264531811	34.016	0.67079	34.083	33.824	34.495	0.066704					52	23	3	0	0	0	0.32733	1	6724	6724		4.756	0	1	403810			58963	7173	33849	33850	71937	71937					0.10109558802332685
YLLPQMRR	8	Unmodified	_YLLPQMRR_					0	0	0			REV__Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|101|3|sense	REV__Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|101|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2723999023438	2	538.805311	1075.59607	0.85612	0.00046128	0.6938	0.00037382	1.5499	0.00083511	538.8053551798947	54.929	0.57211	54.929	54.602	55.174	0					29	20	2	0	0	0	0.34218	1	12990	12990		9.3474	0	1	718460	+		58964	22703	33850	33851	71938	71938					0.061295019362887615
YLLPQMRR	8	Unmodified	_YLLPQMRR_					0	0	0			REV__Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|101|3|sense	REV__Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|101|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2722778320312	2	538.805311	1075.59607	0.72163	0.00038882	0.061909	3.3357E-05	0.78354	0.00042218	538.8049873544669	54.894	0.5918	54.957	54.589	55.181	0.063202					33	21	2	0	0	0	0.34218	1	12970	12970		5.2307	0	1	648700	+		58965	22703	33850	33851	71939	71939					0.061295019362887615
YLLPRVRF	8	Unmodified	_YLLPRVRF_					0	0	0			REV__ENST00000428780.2_1_10:1068608-1089667:+|nuORF	REV__ENST00000428780.2_1_10:1068608-1089667:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.3114013671875	2	532.324194	1062.63383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.989	1	46.049	45.549	46.549	0.059834								0	0	0	0.35779	1	10322	10322		11.114	2.5212	1		+		58966	20921	33851	33852	71940	71940					0.10502336193394513
YLLPYCALL	9	Unmodified	_YLLPYCALL_					0	0	0		ENST00000554892.1_1_14:24028960-24029314:-|nuORF	ENST00000554892.1_1_14:24028960-24029314:-|nuORF	ENST00000554892.1_1_14:24028960-24029314:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7937622070312	2	534.793546	1067.57254	0.4512	0.0002413	1.0249	0.00054809	1.4761	0.00078939	534.7940406280896	63.464	0.4865	63.56	63.39	63.876	0.095722					27	16	2	0	0	0	0.15605	1	15722	15722		28.173	0	1	351990			58967	11838	33852	33853	71941	71941					0.041456433790926894
YLLQCLQLL	9	Unmodified	_YLLQCLQLL_					0	0	0			REV__ENST00000464676.5_1_3:133669982-133717557:-|nuORF	REV__ENST00000464676.5_1_3:133669982-133717557:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8302001953125	2	553.817553	1105.62055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.289	1	90.29	89.79	90.79	0.0003891								0	0	0	0.22789	1	23914	23914		13.508	0	1		+		58968	17847	33853	33854	71942	71942					0.07196717299166266
YLLQFLTPVR	10	Unmodified	_YLLQFLTPVR_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-7|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.3678588867188	2	625.368798	1248.72304	0.041489	2.5946E-05	-2.9826	-0.0018652	-2.9411	-0.0018393	625.3668320292612	91.66	0.28416	91.75	91.657	91.942	0.090668					27	17	2	0	0	0	0.40888	1	24335	24335		1.8442	0	1	133870			58969	7145	33854	33855	71943	71943					0.10863126362255571
YLLQFLTPVR	10	Unmodified	_YLLQFLTPVR_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-7|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.3646240234375	2	625.368798	1248.72304	0.35433	0.00022159	-4.1622	-0.0026029	-3.8078	-0.0023813	625.8679412603763	91.814	0.29656	91.815	91.701	91.998	0.00046539					27	16	2	0	0	0	0.40888	1	24404	24404		1.8442	0	1	208670			58970	7145	33854	33855	71944	71944					0.10863126362255571
YLLQYQEPIP	10	Unmodified	_YLLQYQEPIP_					0	0	0		ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4;PSMA4|p.I194Sfs*6|1|0.21|ENSG00000041357|chr15:78546646-78546647|-/AGCAA|frameshift_variant;ENSG00000041357|ENST00000044462|PSMA4	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENST00000557929.5_1_15:78834269-78838932:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.58203125	3	421.892173	1262.65469	0.13671	5.7679E-05	2.0463	0.0008633	2.183	0.00092098	421.8935932499522	89.282	0.37855	89.282	89.051	89.429	-0.00080872					29	18	2	0	0	0	0.31911	1	23580	23580		6.6304	2.2242	1	99311			58971	605	33855	33856	71945	71945					0.033868369917627206
YLLRLLTFLLG	11	Unmodified	_YLLRLLTFLLG_					0	0	0		nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC	nc|ENSG00000290691|A6NGW2|STRCP1	nc|ENSG00000290691|A6NGW2|STRCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.27978515625	3	441.279591	1320.81694	0.088365	3.8994E-05	0.59785	0.00026382	0.68622	0.00030281	441.279750520986	60.465	0.81519	60.465	60.065	60.88	0					65	29	3	0	0	0	0.46554	1	14783	14783		2.6312	1.3016	1	1030300			58972	8554	33856	33857	71946	71946					0.16936845464556427
YLLRLLTFLLG	11	Unmodified	_YLLRLLTFLLG_					0	0	0		nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC	nc|ENSG00000290691|A6NGW2|STRCP1	nc|ENSG00000290691|A6NGW2|STRCP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2800598144531	3	441.279591	1320.81694	0.23454	0.0001035	0.48888	0.00021573	0.72342	0.00031923	441.2797472615567	60.451	0.80954	60.439	60.026	60.836	-0.011486					76	29	3	0	0	0	0.46554	1	14804	14804		2.6312	1.1761	1	910630			58973	8554	33856	33857	71947	71947					0.16936845464556427
YLLRPDTLK	9	Unmodified	_YLLRPDTLK_					0	0	0			REV__nc|ENSG00000151366|O95298-3|NDUFC2	REV__nc|ENSG00000151366|O95298-3|NDUFC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8529663085938	2	559.832049	1117.64954	0.32087	0.00017963	0.34003	0.00019036	0.6609	0.00036999	559.8320369268539	47.063	0.77368	47.115	46.901	47.674	0.052574					71	28	3	0	0	0	0.27532	1	10624	10624		12.532	0.89125	1	1974500	+		58974	16536	33857	33858	71948	71948					0.09542577919773976
YLLRTLNQI	9	Unmodified	_YLLRTLNQI_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3638305664062	2	567.337498	1132.66044	0.020967	1.1895E-05	0.76018	0.00043128	0.78115	0.00044318	567.8394637024828	41.116	0.37478	41.116	40.93	41.305	0					14	13	2	0	0	0	0.2451	1	8880	8880		10.824	0	1	141760	+		58975	19070	33858	33859	71949	71949					0.09941980294070163
YLLSQNFHFDL	11	Unmodified	_YLLSQNFHFDL_					0	0	0			REV__ENSG00000168702|ENST00000389484|LRP1B	REV__ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.7652893066406	3	466.23471	1395.6823	-0.016239	-7.571E-06	0.30743	0.00014333	0.29119	0.00013576	466.2349240162623	53.8	0.73277	53.856	53.56	54.293	0.056259					68	27	3	0	0	0	0.32951	1	12671	12671		7.846	1.2226	1	1175500	+		58976	17474	33859	33860	71950	71950					0.00028740251991621335
YLLSRLFLVN	10	Unmodified	_YLLSRLFLVN_					0	0	0		ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	619.8700561523438	2	619.368798	1236.72304	0.11984	7.4222E-05	1.672	0.0010356	1.7918	0.0011098	619.3707405203077	91.712	1.9109	91.803	91.166	93.077	0.090675					275	137	3	0	0	0	0.39745	1	24684	24684		3.9444	0	1	768030			58977	6076	33860	33861	71951	71951					0.11415126362271621
YLLSSSFICR	10	Unmodified	_YLLSSSFICR_					0	0	0			REV__ENST00000346329.7_1_11:70282523-70282574:+|nuORF	REV__ENST00000346329.7_1_11:70282523-70282574:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.3450927734375	2	594.807716	1187.60088	0.35002	0.0002082	-4.1471	-0.0024667	-3.7971	-0.0022585	594.8032706896679	69.27	0.19181	69.27	69.147	69.339	0					10	6	2	0	0	0	0.3156	1	17485	17485		10.824	3.215	1	69828	+		58978	20152	33861	33862	71952	71952					0.014583412884121572
YLLSSSTRWC	10	Unmodified	_YLLSSSTRWC_					0	0	0			REV__ENST00000278426.7_2_11:57281475-57283007:-|nuORF	REV__ENST00000278426.7_2_11:57281475-57283007:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.33154296875	2	608.294973	1214.57539	0.35122	0.00021365	-2.8581	-0.0017386	-2.5069	-0.0015249	608.2931086986324	44.095	0.32774	44.095	43.904	44.232	0					16	11	2	0	0	0	0.29038	1	9701	9701		24.021	2.2739	1	220260	+		58979	19698	33862	33863	71953	71953					-0.023311332340199442
YLLTTSFCR	9	Unmodified	_YLLTTSFCR_					0	0	0			REV__ENSG00000164604|ENST00000424100|GPR85	REV__ENSG00000164604|ENST00000424100|GPR85	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.8311767578125	2	552.281334	1102.54812	0.77841	0.0004299	0.53472	0.00029532	1.3131	0.00072522	552.2815317778355	48.22	0.80251	48.268	47.968	48.771	0.047523					44	29	2	0	0	0	0.24739	1	11136	11136		8.5933	0	1	348470	+		58980	17168	33863	33864	71954	71954					0.0009438322556434287
YLLTVCYFT	9	Unmodified	_YLLTVCYFT_					0	0	0			REV__ENST00000496358.1_1_7:99686670-99688376:+|nuORF	REV__ENST00000496358.1_1_7:99686670-99688376:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7955932617188	2	561.780636	1121.54672	0.26241	0.00014742	1.3454	0.00075582	1.6078	0.00090324	561.7813081184811	80.277	0.64869	80.277	80.009	80.657	0					59	23	3	0	0	0	0.28128	1	20818	20818		11.64	3.047	1	999240	+		58981	21670	33864	33865	71955	71955					-0.009192508631713281
YLLTVCYFT	9	Unmodified	_YLLTVCYFT_					0	0	0			REV__ENST00000496358.1_1_7:99686670-99688376:+|nuORF	REV__ENST00000496358.1_1_7:99686670-99688376:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.3427124023438	2	561.780636	1121.54672	0.26241	0.00014742	1.3454	0.00075582	1.6078	0.00090324	561.7813081184811	80.277	0.64869	80.277	80.009	80.657	0					59	23	3	0	0	0	0.24311	1	20851	20851		16.942	3.4344	1	999240	+		58982	21670	33864	33865	71956	71956					-0.009192508631713281
YLLTVCYFT	9	Unmodified	_YLLTVCYFT_					0	0	0			REV__ENST00000496358.1_1_7:99686670-99688376:+|nuORF	REV__ENST00000496358.1_1_7:99686670-99688376:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3428955078125	2	561.780636	1121.54672	0.28489	0.00016005	1.0411	0.00058489	1.326	0.00074494	561.7811615045375	80.214	0.77507	80.279	79.951	80.726	0.065094					78	29	4	0	0	0	0.22596	1	20820	20820		21.747	3.6117	1	868560	+		58983	21670	33864	33865	71957	71957					-0.009192508631713281
YLLVMIGLM	9	Oxidation (M)	_YLLVMIGLM(Oxidation (M))_		YLLVM(0.003)IGLM(0.997)		YLLVM(-25)IGLM(25)	0	0	1		ENST00000406189.3_1_18:48702155-48702203:-|nuORF	ENST00000406189.3_1_18:48702155-48702203:-|nuORF	ENST00000406189.3_1_18:48702155-48702203:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.79443359375	2	534.795232	1067.57591	0.63312	0.00033859	-1.8777	-0.0010042	-1.2446	-0.00066561	534.7944554789749	63.598	0.53205	63.59	63.379	63.911	-0.0085526					30	18	2	0	0	0	0.069231	1	15760	15760		45.75	9.2838	2	373630			58984	10219	33865	33866	71958	71958		942			0.044825701614399804
YLLVSAVSQL	10	Unmodified	_YLLVSAVSQL_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.2772827148438	2	546.818607	1091.62266	0.40061	0.00021906	1.6671	0.0009116	2.0677	0.0011307	546.819606404028	67.142	0.17425	67.142	67.076	67.25	0					8	5	2	0	0	0	0.31358	1	16826	16826		13.906	0	1	135320	+		58985	19226	33866	33867	71959	71959					0.08051469308611559
YLMECIIQ	8	Unmodified	_YLMECIIQ_					0	0	0		ENST00000568642.5_1_16:46706372-46712929:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF;ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF	ENST00000568642.5_1_16:46706372-46712929:-|nuORF	ENST00000568642.5_1_16:46706372-46712929:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	506.7544250488281	2	506.745739	1011.47692	0.33556	0.00017004	-1.7111	-0.00086709	-1.3755	-0.00069704	507.24635382665303	70.834	0.27979	70.834	70.683	70.963	0					12	9	2	0	0	0	0.30517	1	17997	17997		30.225	8.4782	1	173430			58986	903	33867	33868	71960	71960					-0.028354528034356008
YLMIHLKK	8	Unmodified	_YLMIHLKK_					0	0	0		ENSG00000106069|ENST00000222792|CHN2;nc|ENSG00000106069|P52757-9|CHN2;nc|ENSG00000106069|P52757-6|CHN2;nc|ENSG00000106069|P52757-5|CHN2;nc|ENSG00000106069|P52757-7|CHN2;nc|ENSG00000106069|P52757-4|CHN2;nc|ENSG00000106069|P52757-8|CHN2;nc|ENSG00000106069|P52757-3|CHN2	ENSG00000106069|ENST00000222792|CHN2	ENSG00000106069|ENST00000222792|CHN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.2706298828125	2	523.31498	1044.61541	0.21394	0.00011196	1.3134	0.00068731	1.5273	0.00079927	523.3157283592352	25.754	0.27767	25.732	25.524	25.802	-0.022236					11	9	2	0	0	0	0.344	1	4127	4127		2.5775	0	1	47754			58987	2054	33868	33869	71961	71961					0.0948845822720159
YLMRLDIF	8	Unmodified	_YLMRLDIF_					0	0	0			REV__chr11:103391535-103399663|312|10.06|0.06|7.28|+|1|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|31	REV__chr11:103391535-103399663|312|10.06|0.06|7.28|+|1|TE_info:L1PA4,L1PA4_dup9200,L1,LINE,donor,-,103386500,103391535|None,DYNC2H1|31	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.818359375	2	535.788795	1069.56304	0.55111	0.00029528	-3.3754	-0.0018085	-2.8243	-0.0015133	535.7867718218821	88.752	0.5347	88.749	88.462	88.996	-0.0028381					33	22	2	0	0	0	0.34185	1	23476	23476		5.7604	0	1	127540	+		58988	13171	33869	33870	71962	71962					0.031038750935977077
YLMRLLVEF	9	Unmodified	_YLMRLLVEF_					0	0	0			REV__ENSG00000144031|ENST00000360589|ANKRD53	REV__ENSG00000144031|ENST00000360589|ANKRD53	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.280517578125	2	592.330827	1182.6471	0.33949	0.00020109	2.3298	0.00138	2.6693	0.0015811	592.3323428517033	53.789	0.23858	53.845	53.714	53.953	0.056255					13	8	2	0	0	0	0.25879	1	12741	12741		4.756	0	1	202460	+		58989	16216	33870	33871	71963	71963					0.06308406190487403
YLMSGSHD	8	Unmodified	_YLMSGSHD_					0	0	0		nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN;nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3	nc|ENSG00000115808|O43815-2|STRN	nc|ENSG00000115808|O43815-2|STRN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.7286071777344	2	455.192185	908.369817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.938	1	70.999	70.499	71.499	0.060783								0	0	0	0.35985	1	17999	17999		10.183	1.5901	1				58990	2676	33871	33872	71964	71964					-0.08803286693444079
YLMSTGLAHF	10	Unmodified	_YLMSTGLAHF_					0	0	0		ENSG00000179148|ENST00000448843|ALOXE3;nc|ENSG00000179148|Q9BYJ1-2|ALOXE3	ENSG00000179148|ENST00000448843|ALOXE3	ENSG00000179148|ENST00000448843|ALOXE3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2954711914062	2	570.281334	1138.54812	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.054	1	64.147	63.647	64.647	0.09288								0	0	0	0.33354	1	15893	15893		21.747	7.165	1				58991	7107	33872	33873	71965	71965					-0.0156161677439286
YLMVIWELP	9	Unmodified	_YLMVIWELP_					0	0	0		ENSG00000162843|ENST00000437684|WDR64;nc|ENSG00000162843|B1ANS9|WDR64;nc|ENSG00000162843|B1ANS9-2|WDR64	ENSG00000162843|ENST00000437684|WDR64	ENSG00000162843|ENST00000437684|WDR64	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.3270874023438	2	582.312103	1162.60965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.665	1	62.762	62.262	63.262	0.096985								0	0	0	0.24311	1	15466	15466		8.5933	0	1				58992	5624	33873	33874	71966	71966					0.03485314924864724
YLNGRRMNTL	10	Unmodified	_YLNGRRMNTL_					0	0	0		ENST00000573872.5_1_16:3721765-3727644:-|nuORF;nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1;ENST00000575854.5_1_16:3724861-3727653:-|nuORF	ENST00000573872.5_1_16:3721765-3727644:-|nuORF	ENST00000573872.5_1_16:3721765-3727644:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.7669677734375	3	413.220518	1236.63972	-0.056403	-2.3307E-05	-0.40288	-0.00016648	-0.45928	-0.00018978	413.22075745716234	31.749	0.28607	31.749	31.667	31.953	0					17	9	3	0	0	0	0.3179	1	5968	5968		8.9762	0.82072	1	308910			58993	3281	33874	33875	71967	71967					0.030870666427745164
YLNITYTQNF	10	Unmodified	_YLNITYTQNF_					0	0	0			REV__nc|ENSG00000127463|Q8N766-4|EMC1	REV__nc|ENSG00000127463|Q8N766-4|EMC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	426.1985778808594	3	426.211794	1275.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.684	1	21.584	21.084	22.084	-0.10034								0	0	0	0.37523	1	2918	2918		4.1895	0	1		+		58994	15341	33875	33876	71968	71968					-0.013229240477357962
YLNIVSPFE	9	Unmodified	_YLNIVSPFE_					0	0	0		ENSG00000013561|ENST00000394520|RNF14;nc|ENSG00000013561|Q9UBS8-2|RNF14	ENSG00000013561|ENST00000394520|RNF14	ENSG00000013561|ENST00000394520|RNF14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7738647460938	2	541.281857	1080.54916	0.67483	0.00036527	0.14395	7.7918E-05	0.81878	0.00044319	541.2819354777862	85.694	0.50464	85.694	85.484	85.989	0					23	18	2	0	0	0	0.11517	1	22520	22520		36.044	1.6425	1	169500			58995	468	33876	33877	71969	71969					0.012109208661286175
YLNIYVPME	9	Unmodified	_YLNIYVPME_					0	0	0		nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y;ENST00000476359.1_1_Y:16733999-16863586:+|nuORF;nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-3|NLGN4Y	nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y	nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.815673828125	2	571.283543	1140.55253	0.24707	0.00014115	-2.4352	-0.0013912	-2.1881	-0.00125	571.7842413213815	63.133	0.21337	63.133	63.011	63.225	0					9	7	2	0	0	0	0.22596	1	15610	15610		21.747	4.8044	1	280790			58996	5940	33877	33878	71970	71970					-0.012121523515133958
YLNKVDELF	9	Unmodified	_YLNKVDELF_					0	0	0			REV__CON__P34955	REV__CON__P34955	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.3313598632812	2	570.800414	1139.58628	0.37798	0.00021575	-0.95	-0.00054226	-0.57202	-0.00032651	570.7997066770048	75.536	0.64483	75.504	75.184	75.829	-0.031487					68	23	4	0	0	0	0.25066	1	19315	19315		7.2892	0	1	823630	+	+	58997	13257	33878	33879	71971	71971					0.022065924119033298
YLNLARMEF	9	Unmodified	_YLNLARMEF_					0	0	0			REV__ENST00000341119.9_1_7:87479196-87479262:-|nuORF	REV__ENST00000341119.9_1_7:87479196-87479262:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.2819213867188	2	578.794609	1155.57467	0.23775	0.00013761	0.72525	0.00041977	0.963	0.00055738	578.795152257184	76.777	0.36415	76.831	76.694	77.058	0.053413					20	12	2	0	0	0	0.24739	1	19836	19836		13.508	0.97634	1	90142	+		58998	20115	33879	33880	71972	71972					0.0031007211689484393
YLNQAIVGLPF	11	Unmodified	_YLNQAIVGLPF_					0	0	0			REV__ENST00000540840.1_1_4:110925670-110933339:+|nuORF	REV__ENST00000540840.1_1_4:110925670-110933339:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2087097167969	3	412.23253	1233.67576	0.07487	3.0864E-05	-1.181	-0.00048683	-1.1061	-0.00045596	412.23190592354956	35.636	0.31044	35.636	35.52	35.83	0					11	10	2	0	0	0	0.32719	1	7178	7178		14.218	3.4187	1	103720	+		58999	22120	33880	33881	71973	71973					0.06826847091269883
YLNRQALDL	9	Unmodified	_YLNRQALDL_					0	0	0			REV__ENSG00000196110|ENST00000591998|ZNF699	REV__ENSG00000196110|ENST00000591998|ZNF699	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.3193359375	2	553.303655	1104.59276	0.6603	0.00036535	0.41886	0.00023176	1.0792	0.0005971	553.3033193621017	47.109	0.72946	47.109	46.904	47.634	0					52	25	3	0	0	0	0.17787	1	10687	10687		26.884	2.8631	1	1271700	+		59000	18619	33881	33882	71974	71974					0.04464530363270569
YLNRQALDL	9	Unmodified	_YLNRQALDL_					0	0	0			REV__ENSG00000196110|ENST00000591998|ZNF699	REV__ENSG00000196110|ENST00000591998|ZNF699	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3194580078125	2	553.303655	1104.59276	0.85871	0.00047513	-0.30089	-0.00016648	0.55782	0.00030864	553.3032620297298	47.035	0.82637	47.089	46.796	47.622	0.054375					50	22	3	0	0	0	0.17787	1	10641	10641		26.884	1.4843	1	1344500	+		59001	18619	33881	33882	71975	71975					0.04464530363270569
YLNSKQNLC	9	Unmodified	_YLNSKQNLC_					0	0	0			REV__ENSG00000160932|ENST00000292494|LY6E	REV__ENSG00000160932|ENST00000292494|LY6E	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.253662109375	2	541.768591	1081.52263	0.35844	0.00019419	0.31674	0.0001716	0.67518	0.00036579	541.7682539684491	61.312	0.25685	61.303	61.194	61.451	-0.0094528					14	9	2	0	0	0	0.2451	1	15029	15029		15.847	2.3393	1	164250	+		59002	16923	33882	33883	71976	71976					-0.014870912968262928
YLNSKQNLC	9	Unmodified	_YLNSKQNLC_					0	0	0			REV__ENSG00000160932|ENST00000292494|LY6E	REV__ENSG00000160932|ENST00000292494|LY6E	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	541.768591	1081.52263	0.33416	0.00018103	-3.9695	-0.0021506	-3.6354	-0.0019695	542.2677220148689	61.161	0.079346	61.258	61.194	61.273	0.096985	-0.022288	-0.0035892	NaN	15.847	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226900	+		59003	16923	33882	33883							-0.014870912968262928
YLNSSKKSF	9	Unmodified	_YLNSSKKSF_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7536010742188	2	537.284931	1072.55531	0.39656	0.00021306	0.88032	0.00047298	1.2769	0.00068605	537.2855061408695	69.652	0.56494	69.629	69.293	69.858	-0.022087					33	20	2	0	0	0	0.25066	1	17528	17528		7.2892	0	1	262610	+		59004	15965	33883	33884	71977	71977					0.021934390976639406
YLNVLYLFG	9	Unmodified	_YLNVLYLFG_					0	0	0			REV__DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant	REV__DERL1|p.G168Afs*3|1|0.15|ENSG00000136986|chr8:123021450-123021450|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7836303710938	2	551.302593	1100.59063	0.33153	0.00018277	0.00041698	2.2988E-07	0.33195	0.000183	551.3026925600061	59.131	0.13875	59.131	59.024	59.162	0					6	4	2	0	0	0	0.18943	1	14365	14365		30.225	20.151	1	52940	+		59005	13296	33884	33885	71978	71978					0.04436101625447009
YLNYIPKIH	9	Unmodified	_YLNYIPKIH_					0	0	0			REV__nc|ENSG00000129204|P35125-2|USP6	REV__nc|ENSG00000129204|P35125-2|USP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3346557617188	2	580.826766	1159.63898	0.31019	0.00018017	-0.48806	-0.00028348	-0.17786	-0.00010331	580.8263477713331	61.067	0.43396	61.058	60.862	61.296	-0.0094566					26	15	2	0	0	0	0.25526	1	14918	14918		7.9102	0.62092	1	1019800	+		59006	15403	33885	33886	71979	71979					0.06554595265356511
YLNYIPKIH	9	Unmodified	_YLNYIPKIH_					0	0	0			REV__nc|ENSG00000129204|P35125-2|USP6	REV__nc|ENSG00000129204|P35125-2|USP6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	580.826766	1159.63898	0.24906	0.00014466	-0.34916	-0.0002028	-0.1001	-5.814E-05	580.8263682684923	61.049	0.45527	61.049	60.908	61.363	0	-0.0045649	0.00010554	NaN	7.9102	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1088300	+		59007	15403	33885	33886							0.06554595265356511
YLPAALEL	8	Unmodified	_YLPAALEL_					0	0	0		ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A;nc|ENSG00000006118|Q24JP5-3|TMEM132A	ENSG00000006118|ENST00000453848|TMEM132A	ENSG00000006118|ENST00000453848|TMEM132A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.6358947753906	2	445.255111	888.49567	0.64021	0.00028506	-1.2593	-0.00056072	-0.61911	-0.00027566	445.253577571037	33.921	0.47827	33.987	33.786	34.264	0.06636					25	16	2	0	0	0	0.34297	1	6680	6680		0.79363	0	1	153310			59008	354	33886	33887	71980	71980					0.04696168154271163
YLPETGTLF	9	Unmodified	_YLPETGTLF_					0	0	0		ENST00000381153.7_1_11:2319112-2320735:-|nuORF	ENST00000381153.7_1_11:2319112-2320735:-|nuORF	ENST00000381153.7_1_11:2319112-2320735:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2755737304688	2	520.768583	1039.52261	0.37297	0.00019423	0.58573	0.00030503	0.9587	0.00049926	520.7686290869522	82.379	0.48901	82.452	82.263	82.752	0.073097					31	19	2	0	0	0	0.23783	1	21447	21447		18.135	5.6034	1	129160			59009	9993	33887	33888	71981	71981					0.004432319748275404
YLPETGTLF	9	Unmodified	_YLPETGTLF_					0	0	0		ENST00000381153.7_1_11:2319112-2320735:-|nuORF	ENST00000381153.7_1_11:2319112-2320735:-|nuORF	ENST00000381153.7_1_11:2319112-2320735:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	520.768583	1039.52261	0.55015	0.0002865	0.21919	0.00011415	0.76934	0.00040065	520.7685423391986	82.509	0.42043	82.509	82.287	82.708	0	0.037911	-8.5794E-05	NaN	18.135	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182550			59010	9993	33887	33888							0.004432319748275404
YLPGYYSEK	9	Unmodified	_YLPGYYSEK_					0	0	0		ENST00000466666.5_1_22:30689582-30690835:-|nuORF;ENST00000462073.5_1_22:30689736-30691829:-|nuORF;ENSG00000099992|ENST00000215790|TBC1D10A;nc|ENSG00000099992|Q9BXI6-2|TBC1D10A	ENST00000466666.5_1_22:30689582-30690835:-|nuORF	ENST00000466666.5_1_22:30689582-30690835:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2887573242188	2	560.27149	1118.52843	0.50442	0.00028261	1.2524	0.00070167	1.7568	0.00098428	560.2732150707927	64.225	1.1681	64.318	63.794	64.962	0.09288					123	42	4	0	0	0	0.22883	1	16039	16039		19.439	1.304	1	2091800			59011	1510	33888	33889	71982	71982					-0.02609669513526569
YLPIEGLL	8	Unmodified	_YLPIEGLL_					0	0	0		nc|ENSG00000063015|Q53EL9-2|SEZ6;nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2799072265625	2	459.270761	916.52697	0.30617	0.00014062	-0.33551	-0.00015409	-0.029336	-1.3473E-05	459.27046496744	78.802	0.55242	78.86	78.605	79.157	0.058151					33	22	2	0	0	0	0.3225	1	20326	20326		22.453	0	1	99274			59012	769	33889	33890	71983	71983					0.06536741188369888
YLPIEGLL	8	Unmodified	_YLPIEGLL_					0	0	0		nc|ENSG00000063015|Q53EL9-2|SEZ6;nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	459.270761	916.52697	0.33301	0.00015294	-0.058396	-2.682E-05	0.27461	0.00012612	459.27065664743003	78.842	0.52654	78.842	78.615	79.142	0	0.0099166	0.00025278	NaN	22.453	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110830			59013	769	33889	33890							0.06536741188369888
YLPIEGLL	8	Unmodified	_YLPIEGLL_					0	0	0		nc|ENSG00000063015|Q53EL9-2|SEZ6;nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	nc|ENSG00000063015|Q53EL9-2|SEZ6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	459.270761	916.52697	0.49446	0.00022709	-0.53453	-0.00024549	-0.040072	-1.8404E-05	459.2704610290179	78.824	0.70238	78.793	78.601	79.303	-0.030434	-0.038404	-0.00018457	NaN	22.453	40	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141780			59014	769	33889	33890							0.06536741188369888
YLPLLVSAL	9	Unmodified	_YLPLLVSAL_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2;ENST00000583241.1_1_17:16331654-16335285:+|nuORF	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.8074035644531	2	494.807511	987.600469	0.60178	0.00029777	-0.63648	-0.00031494	-0.034697	-1.7168E-05	494.8071109556498	64.576	1.239	64.576	63.889	65.128	0					69	45	2	0	0	0	0.029841	1	16098	16098		60.39	0	1	441780			59015	7700	33890	33891	71984	71984					0.10617289630840787
YLPLLVSAL	9	Unmodified	_YLPLLVSAL_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2;ENST00000583241.1_1_17:16331654-16335285:+|nuORF	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.8074035644531	2	494.807511	987.600469	0.5093	0.000252	-0.45446	-0.00022487	0.054833	2.7132E-05	494.80727712506604	64.574	1.2484	64.564	63.851	65.1	-0.0095291					67	45	2	0	0	0	0.029841	1	16052	16052		60.39	0	1	521380			59016	7700	33890	33891	71985	71985					0.10617289630840787
YLPLMCLLF	9	Unmodified	_YLPLMCLLF_					0	0	0			REV__ENST00000394607.7_1_4:111026722-111119460:-|nuORF	REV__ENST00000394607.7_1_4:111026722-111119460:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7844848632812	2	556.797774	1111.581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.759	1	42.844	42.344	43.344	0.085197								0	0	0	0.22457	1	9331	9331		14.582	0	1		+		59017	20622	33891	33892	71986	71986					0.02966874024059507
YLPMHHFLN	9	Unmodified	_YLPMHHFLN_					0	0	0		ENST00000402802.7_1_7:537201-537390:-|nuORF	ENST00000402802.7_1_7:537201-537390:-|nuORF	ENST00000402802.7_1_7:537201-537390:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.3292846679688	2	586.289494	1170.56443	0.49186	0.00028837	-2.4387	-0.0014298	-1.9469	-0.0011414	586.2874426059328	73.036	0.17207	73.007	72.954	73.126	-0.029305					7	5	2	0	0	0	0.24542	1	18642	18642		14.582	2.0501	1	64132			59018	10204	33892	33893	71987	71987					-0.0140249081764523
YLPNAPGF	8	Unmodified	_YLPNAPGF_					0	0	0			REV__ENST00000476898.1_1_X:56259159-56259459:+|nuORF	REV__ENST00000476898.1_1_X:56259159-56259459:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.73388671875	2	439.723978	877.433404	0.22448	9.8708E-05	0.16759	7.3695E-05	0.39207	0.0001724	439.7239001084693	63.848	0.85278	63.941	63.618	64.471	0.09288					63	30	3	0	0	0	0.42446	1	15908	15908		14.582	0	1	503290	+		59019	21429	33893	33894	71988	71988					-0.010215581940542506
YLPNAPGF	8	Unmodified	_YLPNAPGF_					0	0	0			REV__ENST00000476898.1_1_X:56259159-56259459:+|nuORF	REV__ENST00000476898.1_1_X:56259159-56259459:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.7339782714844	2	439.723978	877.433404	0.33057	0.00014536	-0.069987	-3.0775E-05	0.26059	0.00011459	439.7238032511206	63.994	0.7933	63.985	63.622	64.415	-0.0095291					52	28	3	0	0	0	0.43727	1	15944	15944		10.183	0	1	588170	+		59020	21429	33893	33894	71989	71989					-0.010215581940542506
YLPPEAFTF	9	Unmodified	_YLPPEAFTF_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8078002929688	2	542.771126	1083.5277	0.71138	0.00038612	-2.93	-0.0015903	-2.2187	-0.0012042	542.7693970971469	79.028	0.59802	79.028	78.586	79.184	0					40	24	2	0	0	0	0.0082143	1	20389	20389		78.149	52.75	1	127760			59021	3521	33894	33895	71990	71990					-0.010724641625756703
YLPPEDTLH	9	Unmodified	_YLPPEDTLH_					0	0	0			REV__ENST00000483873.6_1_9:135545612-135545816:+|nuORF	REV__ENST00000483873.6_1_9:135545612-135545816:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8078002929688	2	542.769114	1083.52368	0.88706	0.00048147	0.64845	0.00035196	1.5355	0.00083343	542.769196072134	78.908	0.70242	78.877	78.575	79.277	-0.030434					38	28	2	0	0	0	0.21905	1	20488	20488		23.148	2.6948	1	168530	+		59022	21526	33895	33896	71991	71991					-0.014745536562713824
YLPPPKDGLAV	11	Unmodified	_YLPPPKDGLAV_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.799072265625	2	585.331882	1168.64921	0.48275	0.00028257	-1.6783	-0.00098237	-1.1956	-0.0006998	585.3318182711529	51.2	0.70355	51.209	50.937	51.641	0.0095634					74	26	4	0	0	0	0.32951	1	12046	12046		8.7454	2.0222	1	602200	+		59023	15644	33896	33897	71992	71992					0.07163158199955433
YLPPSLPPSL	10	Unmodified	_YLPPSLPPSL_					0	0	0		nc|ENSG00000132000|Q6PEZ8-3|PODNL1;nc|ENSG00000132000|Q6PEZ8|PODNL1;ENSG00000132000|ENST00000588872|PODNL1	nc|ENSG00000132000|Q6PEZ8-3|PODNL1	nc|ENSG00000132000|Q6PEZ8-3|PODNL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2357177734375	2	542.307875	1082.6012	0.60784	0.00032964	0.17108	9.278E-05	0.77893	0.00042242	542.3077370394308	66.374	0.74563	66.458	66.246	66.992	0.083832					61	26	4	0	0	0	0.25875	1	16669	16669		32.305	17.467	1	1301700			59024	3603	33897	33898	71993	71993					0.06320084279923321
YLPPSVASI	9	Unmodified	_YLPPSVASI_					0	0	0		nc|ENSG00000185504|Q0VG06-2|FAAP100;nc|ENSG00000185504|Q0VG06-3|FAAP100;ENSG00000185504|ENST00000327787|FAAP100	nc|ENSG00000185504|Q0VG06-2|FAAP100	nc|ENSG00000185504|Q0VG06-2|FAAP100	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.765625	2	473.765843	945.517133	0.083644	3.9628E-05	0.45974	0.00021781	0.54339	0.00025744	473.76572380986295	66.81	0.93647	66.796	66.46	67.396	-0.013596					68	32	3	0	0	0	0.24581	1	16823	16823		16.942	1.0951	1	565620			59025	7537	33898	33899	71994	71994					0.04219553183008884
YLPRSLAILS	10	Unmodified	_YLPRSLAILS_					0	0	0		nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97;ENST00000489172.5_1_3:101443520-101477325:+|nuORF	nc|ENSG00000182504|Q8IW35-2|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.280029296875	2	566.839874	1131.66519	0.5536	0.0003138	0.78654	0.00044584	1.3401	0.00075964	566.8401115910534	67.742	0.3718	67.82	67.603	67.975	0.078041					17	12	2	0	0	0	0.31143	1	16995	16995		17.113	0	1	160260			59026	7296	33899	33900	71995	71995					0.10462864436840391
YLPSLHILL	9	Unmodified	_YLPSLHILL_					0	0	0		ENSG00000205858|ENST00000401542|LRRC72	ENSG00000205858|ENST00000401542|LRRC72	ENSG00000205858|ENST00000401542|LRRC72	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2742309570312	2	534.826235	1067.63792	0.18975	0.00010148	0.72249	0.00038641	0.91224	0.00048789	534.8264856973638	69.542	0.48839	69.608	69.395	69.884	0.066048					28	16	2	0	0	0	0.17949	1	17649	17649		32.117	19.585	1	148000			59027	8307	33900	33901	71996	71996					0.106803808964969
YLPSLHILL	9	Unmodified	_YLPSLHILL_					0	0	0		ENSG00000205858|ENST00000401542|LRRC72	ENSG00000205858|ENST00000401542|LRRC72	ENSG00000205858|ENST00000401542|LRRC72	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	534.826235	1067.63792	0.35049	0.00018745	0.49303	0.00026369	0.84352	0.00045114	534.8265155702451	69.585	0.47972	69.563	69.324	69.804	-0.022087	-0.011849	1.1877E-05	NaN	32.117	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154610			59028	8307	33900	33901							0.106803808964969
YLPSSFPVL	9	Unmodified	_YLPSSFPVL_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2492065429688	2	511.781493	1021.54843	0.34225	0.00017516	-1.2113	-0.00061993	-0.86907	-0.00044477	511.7811140028352	79.789	1.0974	79.789	79.08	80.177	0					60	42	2	0	0	0	0.12846	1	20777	20777		44.407	14.182	1	284500			59029	2358	33901	33902	71997	71997					0.03852126217100249
YLPSSFPVL	9	Unmodified	_YLPSSFPVL_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2492065429688	2	511.781493	1021.54843	0.30977	0.00015854	-1.6675	-0.00085339	-1.3577	-0.00069485	511.78104995047516	79.77	0.90437	79.832	79.201	80.106	0.061417					85	36	3	0	0	0	0.1659	1	20743	20743		36.044	12.896	1	223350			59030	2358	33901	33902	71998	71998					0.03852126217100249
YLPSSFPVL	9	Unmodified	_YLPSSFPVL_					0	0	0		ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-3|ACAD10;ENST00000508303.5_1_12:112159488-112186840:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF	ENSG00000111271|ENST00000313698|ACAD10	ENSG00000111271|ENST00000313698|ACAD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2492065429688	2	511.781493	1021.54843	0.30587	0.00015654	-1.5493	-0.00079291	-1.2434	-0.00063637	511.7812352703731	79.834	1.2598	79.805	79.003	80.262	-0.028923					92	47	3	0	0	0	0.1659	1	20777	20777		36.044	12.896	1	281810			59031	2358	33901	33902	71999	71999					0.03852126217100249
YLPTVFAPF	9	Unmodified	_YLPTVFAPF_					0	0	0		ENST00000395811.9_1_17:17093236-17093407:+|nuORF	ENST00000395811.9_1_17:17093236-17093407:+|nuORF	ENST00000395811.9_1_17:17093236-17093407:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2616577148438	2	527.784036	1053.55352	0.52573	0.00027747	-0.82063	-0.00043312	-0.2949	-0.00015565	527.7837511491283	63.297	0.24913	63.392	63.228	63.477	0.095722					13	8	2	0	0	0	0.23783	1	15644	15644		18.135	0	1	179620			59032	10098	33902	33903	72000	72000					0.028884300797017204
YLPVFDKQEK	10	Unmodified	_YLPVFDKQEK_					0	0	0			REV__ENSG00000172296|ENST00000399002|SPTLC3	REV__ENSG00000172296|ENST00000399002|SPTLC3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.5936279296875	3	422.895806	1265.66559	-0.064572	-2.7307E-05	-2.1043	-0.0008899	-2.1689	-0.0009172	422.89464545575686	21.899	0.27187	21.849	21.633	21.905	-0.049376					13	9	2	0	0	0	0.31696	1	2932	2932		10.151	1.4052	1	66432	+		59033	17705	33903	33904	72001	72001					0.04338239366029484
YLPVHFLI	8	Unmodified	_YLPVHFLI_					0	0	0		ENSG00000099219|ENST00000339450|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.7975158691406	2	501.294571	1000.57459	0.31447	0.00015764	-0.25647	-0.00012857	0.058003	2.9076E-05	501.7968565660173	92.007	0.6049	92.007	91.749	92.353	0					58	40	2	0	0	0	0.34147	1	24435	24435		11.114	0	1	178990			59034	1478	33904	33905	72002	72002					0.07432440179240984
YLPVPCKDQC	10	Unmodified	_YLPVPCKDQC_					0	0	0		ENST00000594661.5_1_19:50367579-50369988:-|nuORF	ENST00000594661.5_1_19:50367579-50369988:-|nuORF	ENST00000594661.5_1_19:50367579-50369988:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.3058471679688	2	583.272652	1164.53075	0.40536	0.00023644	2.2048	0.001286	2.6101	0.0015224	583.2739152594868	45.077	0.27056	45.077	44.935	45.206	0					17	9	3	0	0	0	0.31482	1	10038	10038		11.64	0	1	263420			59035	12217	33905	33906	72003	72003					-0.044932803717301795
YLPVPLPQK	9	Unmodified	_YLPVPLPQK_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.2903442382812	2	527.81841	1053.62227	0.45924	0.00024239	-2.2836	-0.0012053	-1.8244	-0.00096294	527.8176281078629	52.187	0.27254	52.238	52.009	52.282	0.050575					12	9	2	0	0	0	0.24913	1	12231	12231		12.532	5.2423	1	135120			59036	6600	33906	33907	72004	72004					0.09760094379407747
YLQAETAKLF	10	Unmodified	_YLQAETAKLF_					0	0	0			REV__TRPC7|p.N767Sfs*4|1|0.04|ENSG00000069018|chr5:136225319-136225320|-/AGTCCCATGAC|frameshift_variant	REV__TRPC7|p.N767Sfs*4|1|0.04|ENSG00000069018|chr5:136225319-136225320|-/AGTCCCATGAC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.320556640625	2	592.321514	1182.62847	0.066588	3.9442E-05	-0.57828	-0.00034253	-0.51169	-0.00030309	592.3210127364626	60.196	0.51952	60.196	59.949	60.469	0					38	18	3	0	0	0	0.080806	1	14715	14715		52.268	10.313	1	1495000	+		59037	13710	33907	33908	72005	72005					0.04446567820264136
YLQAETAKLF	10	Unmodified	_YLQAETAKLF_					0	0	0			REV__TRPC7|p.N767Sfs*4|1|0.04|ENSG00000069018|chr5:136225319-136225320|-/AGTCCCATGAC|frameshift_variant	REV__TRPC7|p.N767Sfs*4|1|0.04|ENSG00000069018|chr5:136225319-136225320|-/AGTCCCATGAC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.321044921875	2	592.321514	1182.62847	-0.23488	-0.00013912	-0.037848	-2.2418E-05	-0.27272	-0.00016154	592.321412157631	60.067	0.53925	60.162	59.907	60.447	0.095093					55	19	4	0	0	0	0.080806	1	14672	14672		52.268	12.319	1	1196700	+		59038	13710	33907	33908	72006	72006					0.04446567820264136
YLQAETAKLF	10	Unmodified	_YLQAETAKLF_					0	0	0			REV__TRPC7|p.N767Sfs*4|1|0.04|ENSG00000069018|chr5:136225319-136225320|-/AGTCCCATGAC|frameshift_variant	REV__TRPC7|p.N767Sfs*4|1|0.04|ENSG00000069018|chr5:136225319-136225320|-/AGTCCCATGAC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.3211059570312	2	592.321514	1182.62847	0.23435	0.00013881	-0.54891	-0.00032513	-0.31456	-0.00018632	592.3211312249326	60.231	0.51782	60.219	59.968	60.485	-0.011486					45	17	4	0	0	0	0.080806	2	14729	14643;14729		52.268	16.141	1	1308500	+		59039	13710	33907	33908	72007;72008	72008					0.04446567820264136
YLQALDRAF	9	Unmodified	_YLQALDRAF_					0	0	0		ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.307861328125	2	548.792924	1095.57129	0.6719	0.00036873	-4.1518	-0.0022785	-3.4799	-0.0019097	548.7916562214267	83.238	0.13066	83.238	83.148	83.279	0					6	4	2	0	0	0	0.23783	1	21742	21742		18.135	2.2878	1	38500			59040	499	33908	33909	72009	72009					0.027331453345368573
YLQDNHLFFSL	11	Unmodified	_YLQDNHLFFSL_					0	0	0			REV__ENSG00000136011|ENST00000388887|STAB2	REV__ENSG00000136011|ENST00000388887|STAB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	466.7652893066406	3	466.23471	1395.6823	0.23875	0.00011131	0.15439	7.1981E-05	0.39313	0.00018329	466.2348331765204	53.863	0.59369	53.863	53.568	54.162	0					55	21	3	0	0	0	0.32396	1	12716	12716		19.987	7.7593	1	975400	+		59041	15779	33909	33910	72010	72010					0.0002874025196888397
YLQDNHLFFSL	11	Unmodified	_YLQDNHLFFSL_					0	0	0			REV__ENSG00000136011|ENST00000388887|STAB2	REV__ENSG00000136011|ENST00000388887|STAB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	466.2348937988281	3	466.23471	1395.6823	0.37975	0.00017705	-0.098265	-4.5815E-05	0.28148	0.00013124	466.2346941152384	54.262	0.7868	54.246	53.919	54.706	-0.015923					71	27	3	0	0	0	0.36722	1	12920	12920		15.538	2.0198	1	1294100	+		59042	15779	33909	33910	72011	72011					0.0002874025196888397
YLQDNHLFFSL	11	Unmodified	_YLQDNHLFFSL_					0	0	0			REV__ENSG00000136011|ENST00000388887|STAB2	REV__ENSG00000136011|ENST00000388887|STAB2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	466.23471	1395.6823	0.37975	0.00017705	-0.098265	-4.5815E-05	0.28148	0.00013124	466.2346941152384	54.262	0.7868	54.246	53.919	54.706	-0.015923	0.25785	-0.00028458	NaN	24.957	71	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1294100	+		59043	15779	33909	33910							0.0002874025196888397
YLQFEKQN	8	Unmodified	_YLQFEKQN_					0	0	0			REV__ENSG00000144820|ENST00000273352|ADGRG7	REV__ENSG00000144820|ENST00000273352|ADGRG7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.2525634765625	2	535.269281	1068.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.059	1	36.145	35.645	36.645	0.08625								0	0	0	0.34492	1	7279	7279		16.942	2.104	1		+		59044	16262	33910	33911	72012	72012					-0.007511339364327796
YLQHSFDEQ	9	Unmodified	_YLQHSFDEQ_					0	0	0			REV__ENSG00000013523|ENST00000251089|ANGEL1	REV__ENSG00000013523|ENST00000251089|ANGEL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3567504882812	2	583.759278	1165.504	0.54133	0.00031601	-0.9775	-0.00057063	-0.43617	-0.00025462	583.7583279271804	84.787	0.81229	84.787	84.47	85.282	0					87	30	5	0	0	0	0.25622	1	22392	22392		7.2892	1.5574	1	955830	+		59045	13445	33911	33912	72013	72013					-0.07212929667048229
YLQHSFDEQ	9	Unmodified	_YLQHSFDEQ_					0	0	0			REV__ENSG00000013523|ENST00000251089|ANGEL1	REV__ENSG00000013523|ENST00000251089|ANGEL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	583.759278	1165.504	0.5074	0.0002962	-0.91386	-0.00053348	-0.40646	-0.00023728	583.7583657030875	84.656	0.81081	84.737	84.446	85.257	0.080887	-0.019262	3.4907E-05	NaN	7.2892	90	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	897250	+		59046	13445	33911	33912							-0.07212929667048229
YLQHSFDEQ	9	Unmodified	_YLQHSFDEQ_					0	0	0			REV__ENSG00000013523|ENST00000251089|ANGEL1	REV__ENSG00000013523|ENST00000251089|ANGEL1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	583.759278	1165.504	0.54457	0.0003179	-0.92278	-0.00053868	-0.37822	-0.00022079	583.7583156491517	84.757	0.75545	84.745	84.441	85.196	-0.012833	-0.011865	2.4493E-05	NaN	7.2892	92	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	928700	+		59047	13445	33911	33912							-0.07212929667048229
YLQIHTCLF	9	Unmodified	_YLQIHTCLF_					0	0	0			REV__ENST00000218340.3_1_X:46739574-46739718:+|nuORF	REV__ENST00000218340.3_1_X:46739574-46739718:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.80322265625	2	569.291702	1136.56885	0.4855	0.00027639	1.6996	0.00096757	2.1851	0.001244	569.2933641278064	66.031	0.49592	66.031	65.821	66.317	0					24	17	2	0	0	0	0.21905	1	16586	16586		23.148	2.2772	1	146770	+		59048	19415	33912	33913	72014	72014					0.006029736052369117
YLQSSLAIL	9	Unmodified	_YLQSSLAIL_					0	0	0			REV__ENSG00000279116|ENST00000624618|OR8D2	REV__ENSG00000279116|ENST00000624618|OR8D2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2924499511719	2	504.292225	1006.5699	0.62702	0.0003162	1.1808	0.00059549	1.8079	0.00091169	504.2918278946427	77.028	1.6104	76.996	76.423	78.033	-0.031334					133	58	3	0	0	0	0.051692	1	19875	19875		52.268	6.2474	1	390240	+		59049	19354	33913	33914	72015	72015					0.06687511245809219
YLQYSKTF	8	Unmodified	_YLQYSKTF_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.26953125	2	525.26875	1048.52295	0.85331	0.00044821	-1.8563	-0.00097505	-1.003	-0.00052684	525.2683660372475	60.558	0.54841	60.558	60.331	60.88	0					41	19	3	0	0	0	0.32435	1	14846	14846		11.64	0	1	691810	+		59050	15767	33914	33915	72016	72016					0.00062651694656779
YLQYSKTF	8	Unmodified	_YLQYSKTF_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2689819335938	2	525.26875	1048.52295	0.86777	0.00045581	-2.3615	-0.0012404	-1.4937	-0.0007846	525.2684253197648	60.598	0.69234	60.588	60.225	60.918	-0.0094566					47	25	3	0	0	0	0.41758	1	14825	14825		16.942	3.0362	1	662820	+		59051	15767	33914	33915	72017	72017					0.00062651694656779
YLRAASITLT	10	Unmodified	_YLRAASITLT_					0	0	0			REV__nc|ENSG00000179750|Q9UH17-3|APOBEC3B	REV__nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.805908203125	2	554.821681	1107.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.547	1	54.547	54.047	55.047	0								0	0	0	0.31311	1	12961	12961		26.268	9.1552	1		+		59052	18091	33915	33916	72018	72018					0.0792998754011478
YLRAASITLT	10	Unmodified	_YLRAASITLT_					0	0	0			REV__nc|ENSG00000179750|Q9UH17-3|APOBEC3B	REV__nc|ENSG00000179750|Q9UH17-3|APOBEC3B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.805419921875	2	554.821681	1107.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.584	1	54.568	54.068	55.068	-0.015923								0	0	0	0.3392	1	12966	12966		19.362	7.8672	1		+		59053	18091	33915	33916	72019	72019					0.0792998754011478
YLRCRLMKI	9	Unmodified	_YLRCRLMKI_					0	0	0		ENSG00000147536|ENST00000276533|GINS4	ENSG00000147536|ENST00000276533|GINS4	ENSG00000147536|ENST00000276533|GINS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.8208618164062	2	598.343746	1194.67294	0.75258	0.0004503	0.64723	0.00038726	1.3998	0.00083757	598.3448402164981	50.04	0.23093	50.085	49.905	50.136	0.044891					11	8	2	0	0	0	0.19839	1	11568	11568		28.487	2.2187	1	133340			59054	4772	33916	33917	72020	72020					0.08338977161133698
YLREPNVIT	9	Unmodified	_YLREPNVIT_					0	0	0		ENST00000452540.1_1_X:154521486-154521618:+|nuORF	ENST00000452540.1_1_X:154521486-154521618:+|nuORF	ENST00000452540.1_1_X:154521486-154521618:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.3265380859375	2	552.806031	1103.59751	0.30413	0.00016812	0.29693	0.00016414	0.60105	0.00033227	552.8064462621749	69.243	0.53831	69.221	68.814	69.352	-0.022087					26	18	2	0	0	0	0.20651	1	17365	17365		26.884	10.735	1	102550			59055	10659	33917	33918	72021	72021					0.04985414506040797
YLRFWFWS	8	Unmodified	_YLRFWFWS_					0	0	0			REV__nc|ENSG00000223802|P27544-2|CERS1	REV__nc|ENSG00000223802|P27544-2|CERS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.30078125	2	602.800552	1203.58655	0.618	0.00037253	-2.1212	-0.0012786	-1.5032	-0.00090611	602.7970912046233	63.339	1.466	63.434	62.495	63.961	0.095722					111	52	3	0	0	0	0.41097	1	15696	15696		18.135	1.0221	1	886140	+		59056	19108	33918	33919	72022	72022					-0.007099430775951987
YLRFWFWSFGF	11	Unmodified	_YLRFWFWSFGF_					0	0	0			REV__nc|ENSG00000223802|P27544-2|CERS1	REV__nc|ENSG00000223802|P27544-2|CERS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.775390625	3	519.255557	1554.74484	0.44491	0.00023102	1.8267	0.0009485	2.2716	0.0011795	519.2564109608253	35.84	0.66093	35.922	35.624	36.284	0.082355					37	23	3	0	0	0	0.33277	1	7236	7236		3.0723	1.6171	1	237490	+		59057	19108	33919	33920	72023	72023					-0.01034068889180162
YLRHFRVIV	9	Unmodified	_YLRHFRVIV_					0	0	0			REV__nc|ENSG00000112038|P35372-18|OPRM1	REV__nc|ENSG00000112038|P35372-18|OPRM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.3410034179688	2	601.861475	1201.7084	0.75683	0.0004555	-1.0346	-0.00062267	-0.27774	-0.00016716	601.8606906299785	65.835	0.35501	65.835	65.713	66.068	0					18	12	2	0	0	0	0.25879	1	16508	16508		4.756	1.1595	1	200050	+		59058	22948	33920	33921	72024	72024					0.115610990048026
YLRHFRVIV	9	Unmodified	_YLRHFRVIV_					0	0	0			REV__nc|ENSG00000112038|P35372-18|OPRM1	REV__nc|ENSG00000112038|P35372-18|OPRM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	601.861475	1201.7084	0.7153	0.00043051	-0.8375	-0.00050406	-0.1222	-7.3549E-05	601.8609077797236	65.731	0.435	65.819	65.653	66.088	0.088882	-0.021879	0.00013733	NaN	4.756	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160950	+		59059	22948	33920	33921							0.115610990048026
YLRHFRVIV	9	Unmodified	_YLRHFRVIV_					0	0	0			REV__nc|ENSG00000112038|P35372-18|OPRM1	REV__nc|ENSG00000112038|P35372-18|OPRM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	601.861475	1201.7084	0.50578	0.00030441	-1.1094	-0.0006677	-0.6036	-0.00036329	601.8607724410024	65.88	0.37178	65.869	65.694	66.066	-0.01133	0.027772	-0.00018994	NaN	4.756	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118870	+		59060	22948	33920	33921							0.115610990048026
YLRHTQLF	8	Unmodified	_YLRHTQLF_					0	0	0		ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8630981445312	2	539.295633	1076.57671	0.41621	0.00022446	2.8577	0.0015412	3.2739	0.0017656	539.7984668399095	76.456	0.50496	76.456	76.22	76.725	0					23	17	2	0	0	0	0.34147	1	19703	19703		11.114	0	1	185440			59061	8650	33921	33922	72025	72025					0.04148868917036452
YLRIAVRCL	9	Unmodified	_YLRIAVRCL_					0	0	0			REV__ENSG00000148331|ENST00000277458|ASB6	REV__ENSG00000148331|ENST00000277458|ASB6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.8479614257812	2	553.828786	1105.64302	0.17145	9.4956E-05	2.6746	0.0014813	2.8461	0.0015762	553.8303639097957	97.931	0.069931	97.992	97.947	98.017	0.061516					12	8	2	0	0	0	0.32733	1	26203	26203		4.756	1.1595	1	105790	+		59062	16419	33922	33923	72026	72026					0.09442361487435846
YLRIAVRCL	9	Unmodified	_YLRIAVRCL_					0	0	0			REV__ENSG00000148331|ENST00000277458|ASB6	REV__ENSG00000148331|ENST00000277458|ASB6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.828786	1105.64302	-0.0033163	-1.8367E-06	2.5839	0.001431	2.5806	0.0014292	553.8301617177086	97.979	0.1118	97.979	97.914	98.026	0	-0.0066221	-3.7235E-05	NaN	4.756	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82519	+		59063	16419	33922	33923							0.09442361487435846
YLRIAVRCL	9	Unmodified	_YLRIAVRCL_					0	0	0			REV__ENSG00000148331|ENST00000277458|ASB6	REV__ENSG00000148331|ENST00000277458|ASB6	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.828786	1105.64302	0.17145	9.4956E-05	2.6746	0.0014813	2.8461	0.0015762	553.8303639097957	97.931	0.069931	97.992	97.947	98.017	0.061516	0.0066221	6.3252E-05	NaN	4.756	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105790	+		59064	16419	33922	33923							0.09442361487435846
YLRLLQSV	8	Unmodified	_YLRLLQSV_					0	0	0			REV__nc|ENSG00000170037|Q8N137-5|CNTROB	REV__nc|ENSG00000170037|Q8N137-5|CNTROB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7480773925781	2	496.300384	990.586216	0.22947	0.00011389	0.62676	0.00031106	0.85623	0.00042495	496.30051688677116	67.41	0.43365	67.393	67.21	67.644	-0.016304					27	14	2	0	0	0	0.33293	1	16983	16983		20.454	3.5113	1	509840	+		59065	17559	33923	33924	72027	72027					0.09054637202564209
YLRLQLCF	8	Unmodified	_YLRLQLCF_					0	0	0			REV__nc|ENSG00000117090|Q13291-3|SLAMF1	REV__nc|ENSG00000117090|Q13291-3|SLAMF1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.2797241210938	2	528.288963	1054.56337	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.56	1	101.59	101.09	102.09	0.027206								0	0	0	0.36961	1	27088	27088		5.7604	0	1		+		59066	14953	33924	33925	72028	72028					0.038272948134363105
YLRLQLCF	8	Unmodified	_YLRLQLCF_					0	0	0			REV__nc|ENSG00000117090|Q13291-3|SLAMF1	REV__nc|ENSG00000117090|Q13291-3|SLAMF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8138427734375	2	528.288963	1054.56337	0.98797	0.00052193	2.6563	0.0014033	3.6443	0.0019252	528.290266382527	78.284	0.49681	78.253	78.009	78.506	-0.030434					26	18	2	0	0	0	0.34185	1	20268	20268		5.7604	0	1	174200	+		59067	14953	33924	33925	72029	72029					0.038272948134363105
YLRMWSSI	8	Unmodified	_YLRMWSSI_					0	0	0		ENST00000477995.1_1_6:170176000-170181606:+|nuORF;nc|ENSG00000130023|Q5T6L9-4|ERMARD;ENSG00000130023|ENST00000366773|ERMARD	ENST00000477995.1_1_6:170176000-170181606:+|nuORF	ENST00000477995.1_1_6:170176000-170181606:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.80078125	2	528.27077	1054.52699	0.45348	0.00023956	-1.075	-0.00056788	-0.6215	-0.00032832	528.2699615044978	51.941	0.43988	51.992	51.788	52.228	0.050571					22	15	2	0	0	0	0.31934	1	12149	12149		24.674	2.9272	1	323850			59068	3447	33925	33926	72030	72030					0.0019041791674681008
YLRMWSSI	8	Unmodified	_YLRMWSSI_					0	0	0		ENST00000477995.1_1_6:170176000-170181606:+|nuORF;nc|ENSG00000130023|Q5T6L9-4|ERMARD;ENSG00000130023|ENST00000366773|ERMARD	ENST00000477995.1_1_6:170176000-170181606:+|nuORF	ENST00000477995.1_1_6:170176000-170181606:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	528.27077	1054.52699	0.46056	0.0002433	-0.55869	-0.00029514	-0.09813	-5.1839E-05	528.2702404349278	52.115	0.64811	52.115	51.648	52.296	0	0.011179	0.00026155	NaN	24.674	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255130			59069	3447	33925	33926							0.0019041791674681008
YLRMWSSI	8	Unmodified	_YLRMWSSI_					0	0	0		ENST00000477995.1_1_6:170176000-170181606:+|nuORF;nc|ENSG00000130023|Q5T6L9-4|ERMARD;ENSG00000130023|ENST00000366773|ERMARD	ENST00000477995.1_1_6:170176000-170181606:+|nuORF	ENST00000477995.1_1_6:170176000-170181606:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	528.27077	1054.52699	0.29624	0.0001565	-0.77561	-0.00040973	-0.47937	-0.00025324	528.2699435340649	52.205	0.5344	52.204	51.876	52.411	-0.00080872	0.10036	3.237E-05	NaN	24.674	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330680			59070	3447	33925	33926							0.0019041791674681008
YLRNDLQV	8	Unmodified	_YLRNDLQV_					0	0	0			REV__ENSG00000184895|ENST00000383070|SRY	REV__ENSG00000184895|ENST00000383070|SRY	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2788391113281	2	510.777274	1019.53999	0.30007	0.00015327	-2.3327	-0.0011915	-2.0327	-0.0010382	511.27849076205445	43.387	1.2529	43.387	42.786	44.039	0					128	45	4	0	0	0	0.33441	1	9525	9525		26.884	2.8631	1	2305700	+		59071	18337	33926	33927	72031	72031					0.031005723004795982
YLRPCMII	8	Unmodified	_YLRPCMII_					0	0	0			REV__ENST00000380916.8_1_9:14618745-14618955:-|nuORF	REV__ENST00000380916.8_1_9:14618745-14618955:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.26397705078125	2	504.772091	1007.52963	0.56839	0.00028691	1.8615	0.00093965	2.4299	0.0012266	504.77197326619074	64.2	0.81796	64.2	63.665	64.483	0					55	29	4	0	0	0	0.2705	1	15996	15996		34.187	3.9625	1	446990	+		59072	20557	33927	33928	72032	72032					0.026165500500269445
YLRQQELL	8	Unmodified	_YLRQQELL_					0	0	0			REV__ENSG00000129250|ENST00000320785|KIF1C	REV__ENSG00000129250|ENST00000320785|KIF1C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.7327270507812	2	531.800749	1061.58694	0.70613	0.00037552	-0.050823	-2.7028E-05	0.65531	0.0003485	531.8007699813911	48.062	0.28624	48.105	47.957	48.243	0.043324					14	10	2	0	0	0	0.34092	1	10969	10969		8.5933	0	1	213560	+		59073	15407	33928	33929	72033	72033					0.05861431851622001
YLRQQKILNN	10	Unmodified	_YLRQQKILNN_					0	0	0		nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21;ENST00000549689.5_1_12:117612134-117624310:-|nuORF	nc|ENSG00000135108|O94952|FBXO21	nc|ENSG00000135108|O94952|FBXO21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	644.8035888671875	2	645.369861	1288.72517	0.45809	0.00029564	-0.27938	-0.0001803	0.17871	0.00011533	645.8712810753775	47.327	0.55789	47.379	47.192	47.75	0.052574					32	20	2	0	0	0	0.32009	1	10709	10709		3.9444	0.3479	1	406280			59074	3844	33929	33930	72034	72034					0.09235555100121928
YLRRIQGAL	9	Unmodified	_YLRRIQGAL_					0	0	0			REV__nc|ENSG00000165275|Q6PF06-2|TRMT10B	REV__nc|ENSG00000165275|Q6PF06-2|TRMT10B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3172607421875	2	545.330008	1088.64546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.725	1	94.725	94.225	95.225	0								0	0	0	0.24522	1	25272	25272		7.9102	0	1		+		59075	17224	33930	33931	72035	72035					0.10468533216771903
YLRRRFPEM	9	Unmodified	_YLRRRFPEM_					0	0	0			REV__ENST00000531866.1_1_11:46722979-46723237:+|nuORF	REV__ENST00000531866.1_1_11:46722979-46723237:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.88165283203125	3	423.229125	1266.66555	-0.16583	-7.0183E-05	0.84637	0.00035821	0.68054	0.00028803	423.22993022590066	39.478	0.33017	39.571	39.332	39.662	0.09267					19	11	2	0	0	0	0.24787	1	8335	8335		15.248	0.29132	1	141760	+		59076	19904	33931	33932	72036	72036					0.04287960885062603
YLRTLQELI	9	Unmodified	_YLRTLQELI_					0	0	0			REV__nc|ENSG00000182541|P53671-3|LIMK2	REV__nc|ENSG00000182541|P53671-3|LIMK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.8374633789062	2	574.837331	1147.66011	0.26826	0.00015421	-0.1418	-8.1514E-05	0.12646	7.2692E-05	574.8370389290521	63.267	0.68282	63.267	63.039	63.722	0					51	24	3	0	0	0	0.04299	1	15696	15696		55.503	0.26809	1	729840	+		59077	23123	33932	33933	72037	72037					0.0921856057423156
YLRTLQELI	9	Unmodified	_YLRTLQELI_					0	0	0			REV__nc|ENSG00000182541|P53671-3|LIMK2	REV__nc|ENSG00000182541|P53671-3|LIMK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.8370971679688	2	574.837331	1147.66011	0.4267	0.00024528	-0.5026	-0.00028891	-0.0759	-4.363E-05	574.8368744045616	63.153	0.66544	63.248	63.016	63.681	0.095722					50	23	3	0	0	0	0.064268	1	15662	15662		47.594	5.2819	1	904790	+		59078	23123	33932	33933	72038	72038					0.0921856057423156
YLRTLQELI	9	Unmodified	_YLRTLQELI_					0	0	0			REV__nc|ENSG00000182541|P53671-3|LIMK2	REV__nc|ENSG00000182541|P53671-3|LIMK2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.83740234375	2	574.837331	1147.66011	0.3046	0.0001751	-0.14318	-8.2307E-05	0.16142	9.2791E-05	574.8370061797687	63.272	0.63937	63.264	63.051	63.691	-0.0085526					52	22	3	0	0	0	0.04299	1	15644	15644		55.503	4.0148	1	748040	+		59079	23123	33932	33933	72039	72039					0.0921856057423156
YLRTYISGLS	10	Unmodified	_YLRTYISGLS_					0	0	0			REV__nc|ENSG00000213689|Q9NSU2-2|TREX1	REV__nc|ENSG00000213689|Q9NSU2-2|TREX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.834228515625	2	586.819138	1171.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.316	1	81.385	80.885	81.885	0.068993								0	0	0	0.36711	1	21167	21167		7.609	0.31972	1		+		59080	19041	33933	33934	72040	72040					0.04477683677509958
YLRTYISGLS	10	Unmodified	_YLRTYISGLS_					0	0	0			REV__nc|ENSG00000213689|Q9NSU2-2|TREX1	REV__nc|ENSG00000213689|Q9NSU2-2|TREX1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.8340454101562	2	586.819138	1171.62372	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.321	1	80.294	79.794	80.794	-0.026825								0	0	0	0.3629	1	20854	20854		9.3831	0.63772	1		+		59081	19041	33933	33934	72041	72041					0.04477683677509958
YLSAQREATSL	11	Unmodified	_YLSAQREATSL_					0	0	0		ENST00000602716.5_1_19:49631560-49640169:+|nuORF;ENST00000421230.6_1_19:49631605-49643027:+|nuORF;PPFIA3|p.R678Afs*50|1|0.21|ENSG00000177380|chr19:49138380-49138380|C/-|frameshift_variant;nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3	ENST00000602716.5_1_19:49631560-49640169:+|nuORF	ENST00000602716.5_1_19:49631560-49640169:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.8948669433594	3	413.550698	1237.63027	0.32561	0.00013466	-0.61319	-0.00025358	-0.28758	-0.00011893	413.5502210935735	21.826	0.44569	21.725	21.498	21.943	-0.10034					36	15	3	0	0	0	0.42762	1	2949	2949		6.2344	0.042509	1	157880			59082	6982	33934	33935	72042	72042					0.020955768382464157
YLSEKLKLK	9	Unmodified	_YLSEKLKLK_					0	0	0		nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L;ENSG00000157060|ENST00000367547|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.284912109375	2	561.350074	1120.6856	0.93308	0.00052378	-0.73372	-0.00041188	0.19935	0.00011191	561.3496317883277	50.553	0.55569	50.598	50.343	50.898	0.044891					45	19	3	0	0	0	0.24688	1	11755	11755		10.074	0	1	491250			59083	5276	33935	33936	72043	72043					0.13008035096640924
YLSFKVLPI	9	Unmodified	_YLSFKVLPI_					0	0	0			REV__nc|ENSG00000104047|Q8N5C7-3|DTWD1	REV__nc|ENSG00000104047|Q8N5C7-3|DTWD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.330078125	2	540.328611	1078.64267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.179	1	83.252	82.752	83.752	0.073097								0	0	0	0.24311	1	21741	21741		8.5933	1.304	1		+		59084	22922	33936	33937	72044	72044					0.1064926503922834
YLSHCIALY	9	Unmodified	_YLSHCIALY_					0	0	0			REV__ENSG00000196071|ENST00000358120|OR2L13	REV__ENSG00000196071|ENST00000358120|OR2L13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2357788085938	2	541.770603	1081.52665	0.44409	0.0002406	-0.96283	-0.00052163	-0.51874	-0.00028104	542.2726191184362	66.741	0.51782	66.728	66.406	66.923	-0.013596					28	18	2	0	0	0	0.23147	1	16678	16678		19.439	6.3965	1	103510	+		59085	18609	33937	33938	72045	72045					-0.010850018031305808
YLSHETNKA	9	Unmodified	_YLSHETNKA_					0	0	0		ENSG00000101463|ENST00000376862|SYNDIG1	ENSG00000101463|ENST00000376862|SYNDIG1	ENSG00000101463|ENST00000376862|SYNDIG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.284423828125	2	531.764363	1061.51417	-0.54198	-0.00028821	0.098803	5.254E-05	-0.44318	-0.00023567	531.764640068737	35.052	0.30807	35.129	34.975	35.283	0.077377					17	10	2	0	0	0	0.25526	1	6945	6945		7.9102	0	1	158440			59086	1704	33938	33939	72046	72046					-0.014123219418024746
YLSIADHYV	9	Unmodified	_YLSIADHYV_					0	0	0		ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.3302612304688	2	540.771657	1079.52876	0.47262	0.00025558	-0.33119	-0.0001791	0.14143	7.648E-05	540.7714765092729	76.595	0.74969	76.595	76.31	77.06	0					45	27	2	0	0	0	0.24913	1	19710	19710		12.532	8.5872	1	192150			59087	6438	33939	33940	72047	72047					-0.007822497936786021
YLSIERAEF	9	Unmodified	_YLSIERAEF_					0	0	0			REV__ENSG00000280021|ENST00000624103|OR51F1	REV__ENSG00000280021|ENST00000624103|OR51F1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.7883911132812	2	564.290214	1126.56587	0.56356	0.00031801	-1.0097	-0.00056975	-0.44611	-0.00025174	564.2894819349942	52.685	0.66452	52.736	52.441	53.106	0.050575					40	23	2	0	0	0	0.24688	1	12481	12481		14.838	4.0143	1	417060	+		59088	19357	33940	33941	72048	72048					0.007654217520894235
YLSIERAEF	9	Unmodified	_YLSIERAEF_					0	0	0			REV__ENSG00000280021|ENST00000624103|OR51F1	REV__ENSG00000280021|ENST00000624103|OR51F1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	564.290214	1126.56587	0.33841	0.00019096	-1.3717	-0.00077404	-1.0333	-0.00058308	564.2894861540001	52.704	0.46542	52.704	52.494	52.96	0	-0.016001	-0.00023467	NaN	10.074	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	482160	+		59089	19357	33940	33941							0.007654217520894235
YLSLFVWVS	9	Unmodified	_YLSLFVWVS_					0	0	0			REV__ENST00000409549.5_1_2:74780012-74780204:-|nuORF	REV__ENST00000409549.5_1_2:74780012-74780204:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3129272460938	2	557.302593	1112.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.888	1	55.888	55.388	56.388	0								0	0	0	0.20639	1	13378	13378		20.454	0	1		+		59090	20761	33941	33942	72049	72049					0.03884101625476433
YLSLLWQR	8	Unmodified	_YLSLLWQR_					0	0	0		ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B	ENSG00000115750|ENST00000263663|TAF1B	ENSG00000115750|ENST00000263663|TAF1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.2877807617188	2	539.805834	1077.59712	0.48702	0.00026289	0.19483	0.00010517	0.68185	0.00036807	539.8061843010686	62.168	1.415	62.168	61.81	63.225	0					180	52	7	0	0	0	0.42446	1	15423	15423		14.582	1.0738	1	9475400			59091	2672	33942	33943	72050	72050					0.06142039576843672
YLSLLWQR	8	Unmodified	_YLSLLWQR_					0	0	0		ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B	ENSG00000115750|ENST00000263663|TAF1B	ENSG00000115750|ENST00000263663|TAF1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.2879028320312	2	539.805834	1077.59712	0.30527	0.00016478	0.26077	0.00014077	0.56604	0.00030555	539.8063673542539	62.082	1.3327	62.179	61.817	63.149	0.096989					169	48	6	0	0	0	0.41097	1	15382	15382		18.135	1.1927	1	9340400			59092	2672	33942	33943	72051	72051					0.06142039576843672
YLSLLWQR	8	Unmodified	_YLSLLWQR_					0	0	0		ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B	ENSG00000115750|ENST00000263663|TAF1B	ENSG00000115750|ENST00000263663|TAF1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.2877197265625	2	539.805834	1077.59712	0.49082	0.00026495	0.099841	5.3895E-05	0.59066	0.00031884	539.8062606939728	62.142	1.4597	62.134	61.757	63.217	-0.0085564					186	53	6	0	0	0	0.41097	1	15391	15391		18.135	2.2878	1	9706700			59093	2672	33942	33943	72052	72052					0.06142039576843672
YLSNLVVAF	9	Unmodified	_YLSNLVVAF_					0	0	0		ENST00000564180.1_1_16:68893964-68894033:+|nuORF	ENST00000564180.1_1_16:68893964-68894033:+|nuORF	ENST00000564180.1_1_16:68893964-68894033:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.2742919921875	2	513.286943	1024.55933	0.57304	0.00029413	-0.72254	-0.00037087	-0.1495	-7.6734E-05	513.2863361371552	54.142	0.56815	54.142	53.806	54.374	0					29	20	3	0	0	0	0.19747	1	12876	12876		24.021	0	1	308460			59094	11943	33943	33944	72053	72053					0.04803528591378381
YLSNLVVAF	9	Unmodified	_YLSNLVVAF_					0	0	0		ENST00000564180.1_1_16:68893964-68894033:+|nuORF	ENST00000564180.1_1_16:68893964-68894033:+|nuORF	ENST00000564180.1_1_16:68893964-68894033:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.2744140625	2	513.286943	1024.55933	0.37992	0.00019501	-0.20578	-0.00010563	0.17414	8.9382E-05	513.2869764233404	54.114	0.45086	54.177	53.902	54.353	0.063202					32	16	3	0	0	0	0.19747	1	12868	12868		24.021	0	1	249860			59095	11943	33943	33944	72054	72054					0.04803528591378381
YLSNLYTW	8	Unmodified	_YLSNLYTW_					0	0	0			REV__ENSG00000136878|ENST00000372429|USP20	REV__ENSG00000136878|ENST00000372429|USP20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2631225585938	2	530.260925	1058.5073	0.78189	0.00041461	-0.15567	-8.2545E-05	0.62622	0.00033206	530.2608350674723	50.566	3.1269	50.611	49.905	53.032	0.044891					314	115	5	0	0	0	0.23581	1	11576	11576		38.151	7.5146	1	10120000	+		59096	15835	33944	33945	72055	72055					-0.019616348223962632
YLSNRLLA	8	Unmodified	_YLSNRLLA_					0	0	0		ENSG00000105329|ENST00000221930|TGFB1;ENST00000597453.1_1_19:41848042-41854244:-|nuORF	ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	474.9176025390625	2	475.276909	948.539266	0.35709	0.00016972	0.38745	0.00018415	0.74455	0.00035387	475.2769373073625	35.83	0.32288	35.913	35.739	36.062	0.082355					17	11	2	0	0	0	0.34185	1	7244	7244		10.183	0	1	74212			59097	1966	33945	33946	72056	72056					0.06293777651433174
YLSNTIMCYC	10	Unmodified	_YLSNTIMCYC_					0	0	0			REV__ENST00000382533.8_1_13:21721623-21721695:+|nuORF	REV__ENST00000382533.8_1_13:21721623-21721695:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.75	2	605.750695	1209.48684	0.19768	0.00011975	0.061908	3.7501E-05	0.25959	0.00015725	605.7504910468587	75.887	0.52351	75.887	75.618	76.141	0					33	18	2	0	0	0	0.34795	1	19492	19492		13.042	2.9685	1	325940	+		59098	20573	33946	33947	72057	72057					-0.10952632860335143
YLSQLSSADEF	11	Unmodified	_YLSQLSSADEF_					0	0	0			REV__nc|ENSG00000166444|P78524-2|DENND2B	REV__nc|ENSG00000166444|P78524-2|DENND2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	420.5316467285156	3	420.531192	1258.57175	0.047128	1.9819E-05	0.38637	0.00016248	0.4335	0.0001823	420.5314046186403	53.108	0.98467	53.108	52.849	53.834	0					76	36	4	0	0	0	0.36257	2	12497	12497;12546		9.2438	0	1	1181400	+		59099	17322	33947	33948	72058;72059	72058					-0.04719524526899477
YLSQLSSADEF	11	Unmodified	_YLSQLSSADEF_					0	0	0			REV__nc|ENSG00000166444|P78524-2|DENND2B	REV__nc|ENSG00000166444|P78524-2|DENND2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.53143310546875	3	420.531192	1258.57175	0.28863	0.00012138	0.37053	0.00015582	0.65915	0.00027719	420.53128597818136	53.127	0.56944	53.183	52.913	53.482	0.056259					49	20	3	0	0	0	0.23983	1	12525	12525		17.049	0	1	1347800	+		59100	17322	33947	33948	72060	72060					-0.04719524526899477
YLSQLSSADEF	11	Unmodified	_YLSQLSSADEF_					0	0	0			REV__nc|ENSG00000166444|P78524-2|DENND2B	REV__nc|ENSG00000166444|P78524-2|DENND2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.5318298339844	3	420.531192	1258.57175	0.1558	6.5517E-05	0.73894	0.00031075	0.89474	0.00037626	420.53135703334783	53.281	0.79008	53.272	53.004	53.794	-0.0096054					69	29	3	0	0	0	0.36257	2	12548	12548;12593		9.2438	0	1	1195700	+		59101	17322	33947	33948	72061;72062	72061					-0.04719524526899477
YLSQLSSADEF	11	Unmodified	_YLSQLSSADEF_					0	0	0			REV__nc|ENSG00000166444|P78524-2|DENND2B	REV__nc|ENSG00000166444|P78524-2|DENND2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	420.531192	1258.57175	0.047128	1.9819E-05	0.38637	0.00016248	0.4335	0.0001823	420.5314046186403	53.108	0.98467	53.108	52.849	53.834	0	-0.079645	-0.00017628	NaN	17.049	76	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1181400	+		59102	17322	33947	33948							-0.04719524526899477
YLSQLSSADEF	11	Unmodified	_YLSQLSSADEF_					0	0	0			REV__nc|ENSG00000166444|P78524-2|DENND2B	REV__nc|ENSG00000166444|P78524-2|DENND2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	420.531192	1258.57175	0.28863	0.00012138	0.37053	0.00015582	0.65915	0.00027719	420.53128597818136	53.127	0.56944	53.183	52.913	53.482	0.056259	-0.0043087	-0.00019627	NaN	17.049	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1347800	+		59103	17322	33947	33948							-0.04719524526899477
YLSQLSSADEF	11	Unmodified	_YLSQLSSADEF_					0	0	0			REV__nc|ENSG00000166444|P78524-2|DENND2B	REV__nc|ENSG00000166444|P78524-2|DENND2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	420.531192	1258.57175	0.1558	6.5517E-05	0.73894	0.00031075	0.89474	0.00037626	420.53135703334783	53.281	0.79008	53.272	53.004	53.794	-0.0096054	0.083954	0.00026852	NaN	17.049	69	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1195700	+		59104	17322	33947	33948							-0.04719524526899477
YLSQPRLTYK	10	Unmodified	_YLSQPRLTYK_					0	0	0		ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF	ENSG00000147416|ENST00000276390|ATP6V1B2	ENSG00000147416|ENST00000276390|ATP6V1B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.2701416015625	3	423.571434	1267.69247	-0.16417	-6.9538E-05	-1.5217	-0.00064454	-1.6858	-0.00071407	423.5707364699923	22.381	0.58356	22.281	21.943	22.527	-0.10034					41	21	3	0	0	0	0.31942	1	3029	3029		6.1918	0.89496	1	107930			59105	4763	33948	33949	72063	72063					0.06933347977224003
YLSQWQDEL	9	Unmodified	_YLSQWQDEL_					0	0	0		ENSG00000133138|ENST00000357242|TBC1D8B	ENSG00000133138|ENST00000357242|TBC1D8B	ENSG00000133138|ENST00000357242|TBC1D8B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8297729492188	2	591.277303	1180.54005	0.39687	0.00023466	1.7329	0.0010246	2.1298	0.0012593	591.2780552560479	57.727	0.66261	57.727	57.466	58.128	0					34	23	2	0	0	0	0.21389	1	14026	14026		25.399	12.868	1	1274400			59106	3698	33949	33950	72064	72064					-0.042994724901973314
YLSQWQDEL	9	Unmodified	_YLSQWQDEL_					0	0	0		ENSG00000133138|ENST00000357242|TBC1D8B	ENSG00000133138|ENST00000357242|TBC1D8B	ENSG00000133138|ENST00000357242|TBC1D8B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.82958984375	2	591.277303	1180.54005	0.377	0.00022291	1.7428	0.0010305	2.1198	0.0012534	591.2780457534362	57.824	0.74576	57.806	57.555	58.3	-0.0172					44	27	2	0	0	0	0.21389	1	14000	14000		25.399	10.151	1	1202400			59107	3698	33949	33950	72065	72065					-0.042994724901973314
YLSRDVLFL	9	Unmodified	_YLSRDVLFL_					0	0	0			REV__nc|ENSG00000157404|P10721-2|KIT	REV__nc|ENSG00000157404|P10721-2|KIT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.320068359375	2	563.318774	1124.623	0.34648	0.00019518	-0.54122	-0.00030488	-0.19474	-0.0001097	563.3186168228666	70.747	1.6873	70.722	70.353	72.041	-0.024872					196	60	6	0	0	0	0.1669	1	18306	18306		28.487	0	1	18137000	+		59108	16783	33950	33951	72066	72066					0.06566889028476908
YLSREFSYP	9	Unmodified	_YLSREFSYP_					0	0	0		ENST00000561139.1_1_15:45009957-45010117:+|nuORF	ENST00000561139.1_1_15:45009957-45010117:+|nuORF	ENST00000561139.1_1_15:45009957-45010117:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.3007202148438	2	581.282389	1160.55022	0.30864	0.00017941	-0.11676	-6.7868E-05	0.19188	0.00011154	581.282295904878	70.466	0.61086	70.466	70.157	70.768	0					58	21	4	0	0	0	0.24581	1	17781	17781		16.942	1.0951	1	331210			59109	11908	33951	33952	72067	72067					-0.023628647649502454
YLSRKQSTRL	10	Unmodified	_YLSRKQSTRL_					0	0	0			REV__ENST00000471733.5_1_3:196807912-197024075:-|nuORF	REV__ENST00000471733.5_1_3:196807912-197024075:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.9204406738281	3	417.910449	1250.70952	-0.16612	-6.9424E-05	-0.021693	-9.0658E-06	-0.18781	-7.8489E-05	417.91034919266383	40.951	0.91006	40.951	40.445	41.355	0					58	33	3	0	0	0	0.38952	1	8691	8691		5.4027	5.4027	1	619460	+		59110	13818	33952	33953	72068	72068					0.0941926858304214
YLSSIDTSTV	10	Unmodified	_YLSSIDTSTV_					0	0	0			REV__TRMT1L|p.S396A|1|0.4|ENSG00000121486|chr1:185139503-185139503|A/C|missense_variant	REV__TRMT1L|p.S396A|1|0.4|ENSG00000121486|chr1:185139503-185139503|A/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.7957153320312	2	543.271687	1084.52882	0.26803	0.00014561	-2.2182	-0.0012051	-1.9501	-0.0010595	543.2702870667891	61.557	0.79347	61.548	61.323	62.117	-0.0094566					44	28	2	0	0	0	0.26638	1	15182	15182		24.021	3.5669	1	362220	+		59111	15123	33953	33954	72069	72069					-0.010062945843401394
YLSSIDTSTV	10	Unmodified	_YLSSIDTSTV_					0	0	0			REV__TRMT1L|p.S396A|1|0.4|ENSG00000121486|chr1:185139503-185139503|A/C|missense_variant	REV__TRMT1L|p.S396A|1|0.4|ENSG00000121486|chr1:185139503-185139503|A/C|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	543.271687	1084.52882	0.15676	8.5161E-05	-2.0541	-0.001116	-1.8974	-0.0010308	543.2703631437447	61.415	0.7899	61.512	61.299	62.089	0.096989	0.0035513	9.3832E-05	NaN	24.021	45	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304230	+		59112	15123	33953	33954							-0.010062945843401394
YLSSLLQPF	9	Unmodified	_YLSSLLQPF_					0	0	0		nc|ENSG00000151687|Q7Z5J8-3|ANKAR;nc|ENSG00000151687|Q7Z5J8-2|ANKAR;ENSG00000151687|ENST00000684021|ANKAR;ENST00000461516.5_1_2:190554359-190560904:+|nuORF;nc|ENSG00000151687|Q7Z5J8-4|ANKAR	nc|ENSG00000151687|Q7Z5J8-3|ANKAR	nc|ENSG00000151687|Q7Z5J8-3|ANKAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.783935546875	2	534.292225	1066.5699	0.66526	0.00035544	-0.75952	-0.0004058	-0.094257	-5.0361E-05	534.7931472544462	86.901	0.94827	86.901	86.45	87.398	0					76	39	3	0	0	0	0.21303	1	22830	22830		21.747	4.8044	1	349250			59113	4974	33954	33955	72070	72070					0.039275112458199146
YLSSPSLMQG	10	Unmodified	_YLSSPSLMQG_					0	0	0			REV__ENSG00000151779|ENST00000281513|NBAS	REV__ENSG00000151779|ENST00000281513|NBAS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.7628173828125	2	541.762975	1081.5114	0.72431	0.0003924	-1.1794	-0.00063893	-0.45505	-0.00024653	541.7623911768619	82.89	1.069	82.869	82.328	83.397	-0.020584					61	29	3	0	0	0	0.25219	1	21688	21688		26.268	8.1332	1	449170	+		59114	16557	33955	33956	72071	72071					-0.0260991339098382
YLSTENASMK	10	Unmodified	_YLSTENASMK_					0	0	0		ENSG00000150471|ENST00000683033|ADGRL3;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2713012695312	2	572.271164	1142.52777	0.70935	0.00040594	0.12709	7.2727E-05	0.83644	0.00047867	572.2712237160998	77.802	1.5156	77.858	77.571	79.086	0.05542					85	57	2	0	0	0	0.2811	1	20071	20071		22.736	0.98964	1	1202800			59115	4911	33956	33957	72072	72072					-0.03778832224861617
YLSTGWFTF	9	Unmodified	_YLSTGWFTF_					0	0	0		ENSG00000184005|ENST00000328299|ST6GALNAC3	ENSG00000184005|ENST00000328299|ST6GALNAC3	ENSG00000184005|ENST00000328299|ST6GALNAC3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.2542724609375	2	561.26875	1120.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.715	1	74.767	74.267	75.267	0.052361								0	0	0	0.21357	1	19151	19151		18.135	1.1927	1				59116	7423	33957	33958	72073	72073					-0.03249348305348576
YLSTRTHGAVF	11	Unmodified	_YLSTRTHGAVF_					0	0	0		nc|ENSG00000122741|Q5QP82-2|DCAF10;ENSG00000122741|ENST00000377724|DCAF10	nc|ENSG00000122741|Q5QP82-2|DCAF10	nc|ENSG00000122741|Q5QP82-2|DCAF10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.9205627441406	3	417.887533	1250.64077	0.31822	0.00013298	-0.89466	-0.00037387	-0.57643	-0.00024088	417.8867880325439	40.293	0.16379	40.393	40.315	40.479	0.099407					6	5	2	0	0	0	0.3322	1	8571	8571		4.7159	0.83959	1	53396			59117	3068	33958	33959	72074	72074					0.02547604283313376
YLSVCNPLPY	10	Unmodified	_YLSVCNPLPY_					0	0	0		IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	IGF2R|p.K2463Sfs*10|1|0.39|ENSG00000197081|chr6:160104992-160104992|G/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.8050537109375	2	584.788992	1167.56343	0.44076	0.00025775	-1.9067	-0.001115	-1.466	-0.00085728	585.2873115304162	72.315	0.89399	72.287	71.765	72.659	-0.027275					48	31	2	0	0	0	0.31165	1	18292	18292		10.824	0	1	82962			59118	7927	33959	33960	72075	72075					-0.01364749977210522
YLSVHVVLT	9	Unmodified	_YLSVHVVLT_					0	0	0		nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	nc|ENSG00000231925|O15533-4|TAPBP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.8185424804688	2	515.800217	1029.58588	0.30535	0.0001575	0.035412	1.8266E-05	0.34077	0.00017577	515.8003588163148	59.061	0.59241	59.047	58.777	59.37	-0.014267					38	20	2	0	0	0	0.24311	1	14288	14288		16.942	0	1	507110			59119	12955	33960	33961	72076	72076					0.07227217482704873
YLSVWYLTY	9	Unmodified	_YLSVWYLTY_					0	0	0			REV__Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|191|2|anti-sense	REV__Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|191|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.7684936523438	2	604.305332	1206.59611	0.52642	0.00031812	-3.8445	-0.0023232	-3.318	-0.0020051	604.3025054838755	57.231	0.38597	57.309	57.011	57.397	0.078674					17	13	2	0	0	0	0.21389	1	13785	13785		19.257	8.4575	1	168960	+		59120	22733	33961	33962	72077	72077					0.0010778041728372045
YLTENPHKK	9	Unmodified	_YLTENPHKK_					0	0	0		nc|ENSG00000111199|Q9HBA0-6|TRPV4;nc|ENSG00000111199|Q9HBA0-2|TRPV4;nc|ENSG00000111199|Q9HBA0-4|TRPV4;nc|ENSG00000111199|Q9HBA0-5|TRPV4;nc|ENSG00000111199|Q9HBA0-3|TRPV4;ENSG00000111199|ENST00000261740|TRPV4;chr12:109814827-109832318|405|12.71|0.6|4.42|-|ENST00000675670|TRPV4,TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.3042602539062	2	565.303655	1128.59276	0.19017	0.0001075	0.50822	0.0002873	0.69839	0.0003948	565.3039594360972	18.429	0.46468	18.312	18.117	18.582	-0.11739					33	15	3	0	0	0	0.32371	1	1928	1928		5.2969	1.1074	1	104470			59121	130	33962	33963	72078	72078					0.03360530363283942
YLTENPHKK	9	Unmodified	_YLTENPHKK_					0	0	0		nc|ENSG00000111199|Q9HBA0-6|TRPV4;nc|ENSG00000111199|Q9HBA0-2|TRPV4;nc|ENSG00000111199|Q9HBA0-4|TRPV4;nc|ENSG00000111199|Q9HBA0-5|TRPV4;nc|ENSG00000111199|Q9HBA0-3|TRPV4;ENSG00000111199|ENST00000261740|TRPV4;chr12:109814827-109832318|405|12.71|0.6|4.42|-|ENST00000675670|TRPV4,TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	565.3038330078125	2	565.303655	1128.59276	-0.070464	-3.9834E-05	0.5355	0.00030272	0.46504	0.00026289	565.304086136228	18.414	0.40089	18.356	18.199	18.6	-0.058174					23	13	2	0	0	0	0.32371	1	1939	1939		5.2969	0.39987	1	104790			59122	130	33962	33963	72079	72079					0.03360530363283942
YLTGFLYN	8	Unmodified	_YLTGFLYN_					0	0	0		ENST00000441843.5_1_13:44464405-44465735:+|nuORF	ENST00000441843.5_1_13:44464405-44465735:+|nuORF	ENST00000441843.5_1_13:44464405-44465735:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2868347167969	2	495.750193	989.485833	0.57362	0.00028437	0.45944	0.00022777	1.0331	0.00051214	495.75011598583745	83.495	0.16157	83.572	83.462	83.623	0.077095					7	5	2	0	0	0	0.34319	1	21845	21845		5.7604	0	1	59527			59123	10559	33963	33964	72080	72080					-0.00933019851095196
YLTGFLYN	8	Unmodified	_YLTGFLYN_					0	0	0		ENST00000441843.5_1_13:44464405-44465735:+|nuORF	ENST00000441843.5_1_13:44464405-44465735:+|nuORF	ENST00000441843.5_1_13:44464405-44465735:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	495.750193	989.485833	0.56702	0.0002811	-0.29954	-0.0001485	0.26748	0.0001326	495.7492551186723	83.797	0.11382	83.78	83.698	83.812	-0.016823	0.10382	-0.0005461	NaN	5.7604	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48205			59124	10559	33963	33964							-0.00933019851095196
YLTIIDDTI	9	Unmodified	_YLTIIDDTI_					0	0	0		ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000588867.1_1_18:21114346-21115663:-|nuORF	ENSG00000141458|ENST00000269228|NPC1	ENSG00000141458|ENST00000269228|NPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.8062744140625	2	533.786973	1065.55939	0.36504	0.00019485	-0.49768	-0.00026565	-0.13264	-7.0801E-05	533.7845374631303	58.958	0.17314	59.049	58.983	59.156	0.091301					6	5	2	0	0	0	0.22596	1	14308	14308		15.847	1.0089	1	83721			59125	4383	33964	33965	72081	72081					0.02923483800714166
YLTKKFTKD	9	Unmodified	_YLTKKFTKD_					0	0	0			REV__ENSG00000171657|ENST00000302548|GPR82	REV__ENSG00000171657|ENST00000302548|GPR82	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.8432006835938	2	572.324057	1142.63356	0.41723	0.00023879	-0.96039	-0.00054965	-0.54316	-0.00031086	572.3235465302541	40.376	0.62954	40.376	40.193	40.822	0					39	22	2	0	0	0	0.25526	1	8735	8735		7.9102	0	1	315840	+		59126	17658	33965	33966	72082	72082					0.06794871682882331
YLTKKFTKD	9	Unmodified	_YLTKKFTKD_					0	0	0			REV__ENSG00000171657|ENST00000302548|GPR82	REV__ENSG00000171657|ENST00000302548|GPR82	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	572.324057	1142.63356	0.37114	0.00021241	-0.36279	-0.00020763	0.0083549	4.7817E-06	572.323774456131	40.133	0.46947	40.232	40.01	40.479	0.099407	-0.075999	0.0003051	NaN	7.9102	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323580	+		59127	17658	33965	33966							0.06794871682882331
YLTKQAHDL	9	Unmodified	_YLTKQAHDL_					0	0	0			REV__ENST00000590392.5_1_19:37203293-37203431:+|nuORF	REV__ENST00000590392.5_1_19:37203293-37203431:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.30810546875	2	544.790381	1087.56621	0.57029	0.00031069	-1.1035	-0.0006012	-0.53325	-0.00029051	544.7896397451384	39.562	0.44551	39.655	39.497	39.943	0.09267					22	15	2	0	0	0	0.17787	1	8389	8389		26.884	0.61551	1	171290	+		59128	18593	33966	33967	72083	72083					0.025928414719373905
YLTKQAHDL	9	Unmodified	_YLTKQAHDL_					0	0	0			REV__ENST00000590392.5_1_19:37203293-37203431:+|nuORF	REV__ENST00000590392.5_1_19:37203293-37203431:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	544.790381	1087.56621	0.15968	8.6993E-05	-0.062391	-3.399E-05	0.097291	5.3003E-05	544.7902040058251	39.776	0.3726	39.776	39.569	39.942	0	0.098157	0.00056142	NaN	26.884	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163460	+		59129	18593	33966	33967							0.025928414719373905
YLTKQAHDL	9	Unmodified	_YLTKQAHDL_					0	0	0			REV__ENST00000590392.5_1_19:37203293-37203431:+|nuORF	REV__ENST00000590392.5_1_19:37203293-37203431:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.790381	1087.56621	0.57029	0.00031069	-1.1035	-0.0006012	-0.53325	-0.00029051	544.7896397451384	39.562	0.44551	39.655	39.497	39.943	0.09267	-0.022957	-0.000573	NaN	26.884	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171290	+		59130	18593	33966	33967							0.025928414719373905
YLTLPLPM	8	Unmodified	_YLTLPLPM_					0	0	0		nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15	nc|ENSG00000135655|Q9Y4E8-2|USP15	nc|ENSG00000135655|Q9Y4E8-2|USP15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	474.26873779296875	2	474.267164	946.519776	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.361	1	77.33	76.83	77.83	-0.031334								0	0	0	0.3683	1	19949	19949		6.3541	0.59368	1				59131	3891	33967	33968	72084	72084					0.04437685316304396
YLTLYNICF	9	Unmodified	_YLTLYNICF_					0	0	0		ENSG00000058063|ENST00000323116|ATP11B;ENST00000490303.5_1_3:182583321-182631816:+|nuORF;ENST00000466758.5_1_3:182602545-182631653:+|nuORF	ENSG00000058063|ENST00000323116|ATP11B	ENSG00000058063|ENST00000323116|ATP11B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.3374633789062	2	575.286085	1148.55762	0.245	0.00014094	3.2042	0.0018433	3.4492	0.0019843	575.2870117488917	68.957	0.47576	68.938	68.68	69.155	-0.019157					23	16	2	0	0	0	0.19839	1	17387	17387		28.487	8.0332	1	195960			59132	729	33968	33969	72085	72085					-0.010718484888911917
YLTMKVVLL	9	Unmodified	_YLTMKVVLL_					0	0	0		ENST00000261489.6_2_13:45008100-45008229:-|nuORF;nc|ENSG00000102804|Q15714-4|TSC22D1	ENST00000261489.6_2_13:45008100-45008229:-|nuORF	ENST00000261489.6_2_13:45008100-45008229:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.330322265625	2	540.330296	1078.64604	0.4138	0.00022359	-0.30716	-0.00016597	0.10665	5.7625E-05	540.3299975168404	76.344	2.4263	76.344	75.154	77.58	0					260	88	5	0	0	0	0.30166	1	19758	19758		8.5933	3.3626	1	3193300			59133	8966	33969	33970	72086	72086					0.10986191821598368
YLTPMKHML	9	Unmodified	_YLTPMKHML_					0	0	0		ENSG00000144741|ENST00000354883|SLC25A26	ENSG00000144741|ENST00000354883|SLC25A26	ENSG00000144741|ENST00000354883|SLC25A26	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2796020507812	2	567.29593	1132.57731	0.57829	0.00032806	0.77605	0.00044025	1.3543	0.00076831	567.2964428999454	74.571	0.32616	74.571	74.405	74.731	0					20	11	3	0	0	0	0.26612	1	19084	19084		13.906	0	1	283500			59134	4608	33970	33971	72087	72087					0.016322042502224576
YLTRQLCPD	9	Unmodified	_YLTRQLCPD_					0	0	0			REV__nc|ENSG00000139835|Q5TC63-2|GRTP1	REV__nc|ENSG00000139835|Q5TC63-2|GRTP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.2531127929688	2	554.776416	1107.53828	0.26372	0.0001463	1.2105	0.00067157	1.4742	0.00081788	555.2786720323159	76.163	0.085876	76.132	76.077	76.163	-0.031487					4	2	2	0	0	0	0.24913	1	19583	19583		12.532	3.1841	1	57778	+		59135	16008	33971	33972	72088	72088					-0.011188047797986655
YLTRVHIR	8	Unmodified	_YLTRVHIR_					0	0	0			REV__ENST00000481742.1_1_19:36606435-36607215:+|nuORF	REV__ENST00000481742.1_1_19:36606435-36607215:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.315673828125	2	529.3169	1056.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.59	1	112.58	112.08	113.08	-0.015625								0	0	0	0.37778	1	29285	29285		2.0598	0	1		+		59136	21494	33972	33973	72089	72089					0.09320264045254589
YLTTHFYGQL	10	Unmodified	_YLTTHFYGQL_					0	0	0		nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.8099365234375	2	621.811313	1241.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.342	1	79.403	78.903	79.903	0.061417								0	0	0	0.38126	1	20559	20559		1.6526	0.17072	1				59137	971	33973	33974	72090	72090					-0.0030660283950965095
YLTYICLSV	9	Unmodified	_YLTYICLSV_					0	0	0		nc|ENSG00000168952|Q8NFX7-2|STXBP6;ENSG00000168952|ENST00000323944|STXBP6	nc|ENSG00000168952|Q8NFX7-2|STXBP6	nc|ENSG00000168952|Q8NFX7-2|STXBP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7586669921875	2	537.780636	1073.54672	0.54172	0.00029133	0.94386	0.00050759	1.4856	0.00079892	537.7814051040308	36.075	0.27927	36.157	35.98	36.259	0.082355					15	9	2	0	0	0	0.25526	1	7270	7270		7.9102	0	1	119390			59138	6316	33974	33975	72091	72091					0.012887491368246629
YLVAINAVY	9	Unmodified	_YLVAINAVY_					0	0	0			REV__ENST00000239231.6_1_5:167984225-167984402:-|nuORF	REV__ENST00000239231.6_1_5:167984225-167984402:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7045288085938	2	513.286943	1024.55933	0.21123	0.00010842	-0.6064	-0.00031126	-0.39516	-0.00020283	513.2866702716852	70.044	0.32985	70.022	69.858	70.188	-0.022087					18	11	2	0	0	0	0.24739	1	17739	17739		13.508	3.3245	1	119530	+		59139	19489	33975	33976	72092	72092					0.04803528591378381
YLVELKYMI	9	Unmodified	_YLVELKYMI_					0	0	0			REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	REV__nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.306396484375	2	586.325211	1170.63587	0.48562	0.00028473	2.1829	0.0012799	2.6685	0.0015646	586.3259837482626	65.612	0.33601	65.612	65.458	65.795	0					16	11	2	0	0	0	0.24581	1	16357	16357		16.942	4.4107	1	145280	+		59140	14242	33976	33977	72093	72093					0.05737584096345927
YLVFGLILF	9	Unmodified	_YLVFGLILF_					0	0	0		nc|ENSG00000173264|Q96N19-4|GPR137;nc|ENSG00000173264|Q96N19-5|GPR137;nc|ENSG00000173264|Q96N19-3|GPR137;ENSG00000173264|ENST00000438980|GPR137;nc|ENSG00000173264|Q96N19|GPR137	nc|ENSG00000173264|Q96N19-4|GPR137	nc|ENSG00000173264|Q96N19-4|GPR137	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.3091430664062	2	542.825704	1083.63685	0.67144	0.00036447	2.3569	0.0012794	3.0283	0.0016438	542.8268834732243	51.179	0.45766	51.179	50.949	51.406	0					26	16	2	0	0	0	0.25291	1	11862	11862		9.3474	4.1168	1	201760			59141	12839	33977	33978	72094	72094					0.09838166527561043
YLVFMIIF	8	Unmodified	_YLVFMIIF_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.7525634765625	2	523.293182	1044.57181	0.76124	0.00039835	-0.058364	-3.0542E-05	0.70288	0.00036781	523.2931663783087	47.297	0.3055	47.297	47.162	47.468	0					14	10	2	0	0	0	0.33618	1	10726	10726		17.087	0	1	128360			59142	2037	33978	33979	72095	72095					0.05130848730050275
YLVGIIFSF	9	Unmodified	_YLVGIIFSF_					0	0	0			REV__ENSG00000134531|ENST00000256951|EMP1	REV__ENSG00000134531|ENST00000256951|EMP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.7816772460938	2	529.799686	1057.58482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.872	1	91.872	91.372	92.372	0								0	0	0	0.19325	1	24412	24412		24.674	3.8027	1		+		59143	15681	33979	33980	72096	72096					0.058330031137984406
YLVGISDPNS	10	Unmodified	_YLVGISDPNS_					0	0	0		ENSG00000171914|ENST00000636159|TLN2;TLN2|p.I2353Mfs*42|1|0.13|ENSG00000171914|chr15:62833559-62833559|T/-|frameshift_variant;ENST00000489129.5_1_15:63032816-63046163:+|nuORF	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7670288085938	2	532.766571	1063.51859	0.53806	0.00028666	1.0732	0.00057178	1.6113	0.00085844	532.7668917392504	71.331	0.78322	71.331	71.128	71.911	0					35	27	2	0	0	0	0.22916	1	18117	18117		29.082	3.6823	1	606800			59144	6595	33980	33981	72097	72097					-0.010628575189002731
YLVGKDSDAP	10	Unmodified	_YLVGKDSDAP_					0	0	0		ENSG00000186532|ENST00000305513|SMYD4;ENST00000573937.5_1_17:1707859-1733034:-|nuORF;SMYD4|p.E257Afs*52|1|0.08|ENSG00000186532|chr17:1800620-1800624|GAGCT/-|frameshift_variant	ENSG00000186532|ENST00000305513|SMYD4	ENSG00000186532|ENST00000305513|SMYD4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.766845703125	2	532.766571	1063.51859	0.35182	0.00018744	1.0475	0.00055806	1.3993	0.0007455	532.7668273137141	71.261	0.75133	71.322	71.148	71.9	0.060783					34	26	2	0	0	0	0.2593	1	18102	18102		25.399	0	1	491870			59145	7626	33981	33982	72098	72098					-0.010628575189002731
YLVGLKMRTI	10	Unmodified	_YLVGLKMRTI_					0	0	0		nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1;ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF	nc|ENSG00000107104|Q14678-2|KANK1	nc|ENSG00000107104|Q14678-2|KANK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8576049804688	2	597.357376	1192.7002	0.51945	0.0003103	0.56717	0.0003388	1.0866	0.0006491	597.3586078268477	90.167	1.2978	90.167	89.63	90.927	0.0003891					299	105	4	0	0	0	0.38515	1	24086	24086		6.2058	0.47393	1	970830			59146	2111	33982	33983	72099	72099					0.11155783973163125
YLVGLSREK	9	Unmodified	_YLVGLSREK_					0	0	0			REV__nc|ENSG00000120549|Q5T5P2-2|KIAA1217	REV__nc|ENSG00000120549|Q5T5P2-2|KIAA1217	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7686767578125	2	532.808574	1063.60259	0.6095	0.00032475	-2.4087	-0.0012834	-1.7992	-0.00095863	533.3080607105578	72.948	0.13423	72.948	72.855	72.989	0					6	4	2	0	0	0	0.25066	1	18610	18610		11.64	0	1	95843	+		59147	15087	33983	33984	72100	72100					0.07333718368658992
YLVIEYGAP	9	Unmodified	_YLVIEYGAP_					0	0	0			REV__nc|ENSG00000117115|Q9Y2J8-2|PADI2	REV__nc|ENSG00000117115|Q9Y2J8-2|PADI2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2825927734375	2	512.771126	1023.5277	0.32072	0.00016446	-1.2582	-0.00064517	-0.93748	-0.00048072	512.7707715363788	71.421	0.21608	71.394	71.236	71.452	-0.027275					11	7	2	0	0	0	0.18943	1	18103	18103		30.225	1.738	1	182380	+		59148	14955	33984	33985	72101	72101					0.016875358374363714
YLVITLVIN	9	Unmodified	_YLVITLVIN_					0	0	0			REV__ENSG00000154007|ENST00000284142|ASB17	REV__ENSG00000154007|ENST00000284142|ASB17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.3079223632812	2	524.326068	1046.63758	0.17117	8.9749E-05	-0.32805	-0.000172	-0.15688	-8.2255E-05	524.3257857273838	81.463	0.83942	81.532	81.247	82.086	0.068993					87	39	3	0	0	0	0.22883	1	21378	21378		19.439	3.5918	1	745670	+		59149	16645	33985	33986	72102	72102					0.116129611766155
YLVKKQGNF	9	Unmodified	_YLVKKQGNF_					0	0	0			REV__nc|ENSG00000170471|Q86X10-2|RALGAPB	REV__nc|ENSG00000170471|Q86X10-2|RALGAPB	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.2783203125	2	548.811116	1095.60768	0.3958	0.00021722	-1.8639	-0.0010229	-1.4681	-0.00080569	548.8107344736451	53.519	0.076241	53.576	53.535	53.611	0.056255					4	2	2	0	0	0	0.24739	1	12637	12637		13.508	0	1	128640	+		59150	17581	33986	33987	72103	72103					0.0637002223129457
YLVKNGKL	8	Unmodified	_YLVKNGKL_					0	0	0			REV__ENST00000492514.1_1_21:38610748-38639601:-|nuORF	REV__ENST00000492514.1_1_21:38610748-38639601:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.78936767578125	2	467.789653	933.564752	0.20026	9.3678E-05	0.71164	0.0003329	0.91189	0.00042657	467.789933636322	55.719	0.48198	55.719	55.4	55.882	0					23	16	2	0	0	0	0.35375	1	13350	13350		24.674	2.9272	1	285030	+		59151	16787	33987	33988	72104	72104					0.09531252173849225
YLVKNGKL	8	Unmodified	_YLVKNGKL_					0	0	0			REV__ENST00000492514.1_1_21:38610748-38639601:-|nuORF	REV__ENST00000492514.1_1_21:38610748-38639601:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	467.789653	933.564752	0.20026	9.3678E-05	0.71164	0.0003329	0.91189	0.00042657	467.789933636322	55.719	0.48198	55.719	55.4	55.882	0	-0.030071	0.001054	NaN	24.674	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285030	+		59152	16787	33987	33988							0.09531252173849225
YLVKNGKL	8	Unmodified	_YLVKNGKL_					0	0	0			REV__ENST00000492514.1_1_21:38610748-38639601:-|nuORF	REV__ENST00000492514.1_1_21:38610748-38639601:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	467.789653	933.564752	0.33645	0.00015739	-0.32171	-0.00015049	0.014747	6.8984E-06	467.78964206206024	55.685	0.32734	55.756	55.501	55.828	0.070885	0.0071034	8.7225E-05	NaN	24.674	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240810	+		59153	16787	33987	33988							0.09531252173849225
YLVKNGKL	8	Unmodified	_YLVKNGKL_					0	0	0			REV__ENST00000492514.1_1_21:38610748-38639601:-|nuORF	REV__ENST00000492514.1_1_21:38610748-38639601:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	467.789653	933.564752	0.43198	0.00020208	-0.66284	-0.00031007	-0.23086	-0.00010799	467.7892907366463	55.791	0.37865	55.772	55.536	55.915	-0.019077	0.022967	-0.00023194	NaN	24.674	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301910	+		59154	16787	33987	33988							0.09531252173849225
YLVLSVATVF	10	Unmodified	_YLVLSVATVF_					0	0	0			REV__ENST00000519180.1_1_5:178349154-178349586:+|nuORF	REV__ENST00000519180.1_1_5:178349154-178349586:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.3056640625	2	556.323525	1110.6325	0.67877	0.00037762	0.81626	0.0004541	1.495	0.00083172	556.3239943749826	74.719	0.36819	74.719	74.566	74.934	0					17	12	2	0	0	0	0.2892	1	19191	19191		21.747	1.293	1	152710	+		59155	21869	33988	33989	72105	72105					0.0816065731398794
YLVMFLIT	8	Unmodified	_YLVMFLIT_					0	0	0			REV__ENSG00000155760|ENST00000286201|FZD7	REV__ENSG00000155760|ENST00000286201|FZD7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.7669982910156	2	500.282815	998.551076	-0.23042	-0.00011528	-0.84234	-0.00042141	-1.0728	-0.00053668	500.28242110717997	34.453	0.44487	34.531	34.363	34.807	0.077377					29	15	2	0	0	0	0.34185	1	6789	6789		10.183	0	1	202170	+		59156	16712	33989	33990	72106	72106					0.05174258350393757
YLVNDEYFE	9	Unmodified	_YLVNDEYFE_					0	0	0			REV__ENSG00000093072|ENST00000399837|ADA2	REV__ENSG00000093072|ENST00000399837|ADA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.324462890625	2	596.263862	1190.51317	0.17743	0.00010579	0.16629	9.9156E-05	0.34372	0.00020495	596.2639622144038	65.194	0.52428	65.194	64.934	65.458	0					33	18	2	0	0	0	0.22674	1	16190	16190		22.736	0	1	505050	+		59157	14088	33990	33991	72107	72107					-0.07446581101385163
YLVNDEYFE	9	Unmodified	_YLVNDEYFE_					0	0	0			REV__ENSG00000093072|ENST00000399837|ADA2	REV__ENSG00000093072|ENST00000399837|ADA2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	596.263862	1190.51317	0.21589	0.00012873	0.002263	1.3494E-06	0.21816	0.00013008	596.263694287059	65.037	0.55815	65.126	64.933	65.491	0.088882	-0.16253	-0.00010073	NaN	22.736	39	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	558150	+		59158	14088	33990	33991							-0.07446581101385163
YLVNDEYFE	9	Unmodified	_YLVNDEYFE_					0	0	0			REV__ENSG00000093072|ENST00000399837|ADA2	REV__ENSG00000093072|ENST00000399837|ADA2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	596.263862	1190.51317	0.48739	0.00029061	-3.9451	-0.0023523	-3.4577	-0.0020617	596.7616041693053	65.557	0.10774	65.545	65.478	65.586	-0.011337	0.25719	-0.0048081	NaN	22.736	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80941	+		59159	14088	33990	33991							-0.07446581101385163
YLVNEQLF	8	Unmodified	_YLVNEQLF_					0	0	0			REV__ENSG00000122733|ENST00000242315|PHF24	REV__ENSG00000122733|ENST00000242315|PHF24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7728271484375	2	513.26875	1024.52295	0.36823	0.000189	-2.3968	-0.0012302	-2.0285	-0.0010412	513.2677665715803	68.503	1.277	68.503	68.15	69.428	0					71	46	2	0	0	0	0.31934	1	17409	17409		24.674	7.7316	1	806800	+		59160	15168	33991	33992	72108	72108					0.011666516946434058
YLVNFGDVV	9	Unmodified	_YLVNFGDVV_					0	0	0			REV__nc|ENSG00000179889|Q6P996-2|PDXDC1	REV__nc|ENSG00000179889|Q6P996-2|PDXDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.26904296875	2	513.26875	1024.52295	0.40741	0.00020911	-1.1807	-0.000606	-0.77326	-0.00039689	513.2685360919108	72.276	1.2528	72.332	71.949	73.202	0.056572					85	45	3	0	0	0	0.10197	1	18383	18383		37.974	11.09	1	599480	+		59161	18093	33992	33993	72109	72109					0.011666516946661432
YLVNFGDVV	9	Unmodified	_YLVNFGDVV_					0	0	0			REV__nc|ENSG00000179889|Q6P996-2|PDXDC1	REV__nc|ENSG00000179889|Q6P996-2|PDXDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2692260742188	2	513.26875	1024.52295	0.32061	0.00016456	-1.0888	-0.00055882	-0.76814	-0.00039426	513.2684838672672	72.354	2.1159	72.327	71.63	73.746	-0.027275					119	76	3	0	0	0	0.10197	1	18416	18416		37.974	11.633	1	760640	+		59162	18093	33992	33993	72110	72110					0.011666516946661432
YLVPRGGA	8	Unmodified	_YLVPRGGA_					0	0	0			REV__nc|ENSG00000188747|Q86UR1-3|NOXA1	REV__nc|ENSG00000188747|Q86UR1-3|NOXA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.4917907714844	2	416.73742	831.460287	0.41254	0.00017192	-0.23938	-9.9759E-05	0.17315	7.216E-05	416.7371798457689	48.104	0.47188	48.147	47.926	48.398	0.04332					27	17	2	0	0	0	0.34247	1	10928	10928		8.5933	0	1	257210	+		59163	18569	33993	33994	72111	72111					0.03781550417147628
YLVRVHVP	8	Unmodified	_YLVRVHVP_					0	0	0		HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant;nc|ENSG00000143341|Q96RW7-2|HMCN1;HMCN1|p.A5600Gfs*20|1|0.2|ENSG00000143341|chr1:186189767-186189768|-/G|frameshift_variant;ENSG00000143341|ENST00000271588|HMCN1	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	HMCN1|p.S4770Kfs*9|1|0.12|ENSG00000143341|chr1:186145444-186145445|-/AGTCTATAAATAG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.7961120605469	2	491.795269	981.575986	0.78657	0.00038683	0.62614	0.00030793	1.4127	0.00069476	491.79550920990766	46.96	0.93914	47.014	46.602	47.541	0.054375					58	33	2	0	0	0	0.43727	1	10671	10671		10.183	2.2732	1	1037200			59164	4502	33994	33995	72112	72112					0.08446074267999393
YLVSHSTPF	9	Unmodified	_YLVSHSTPF_					0	0	0			REV__ENSG00000068724|ENST00000319190|TTC7A	REV__ENSG00000068724|ENST00000319190|TTC7A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.28662109375	2	525.766374	1049.5182	0.74658	0.00039252	1.5646	0.00082262	2.3112	0.0012151	525.7675439895436	78.358	0.5683	78.417	78.089	78.657	0.058159					28	20	2	0	0	0	0.23783	1	20312	20312		18.135	4.6271	1	103660	+		59165	13704	33995	33996	72113	72113					-0.004582324480907118
YLVVRLSMMI	10	Unmodified	_YLVVRLSMMI_					0	0	0		ENST00000475971.5_1_7:893033-912965:+|nuORF;ENST00000413171.6_1_7:892397-912965:+|nuORF;nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1	ENST00000475971.5_1_7:893033-912965:+|nuORF	ENST00000475971.5_1_7:893033-912965:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.21673583984375	3	408.899617	1223.67702	-0.11896	-4.8644E-05	-1.8372	-0.00075123	-1.9562	-0.00079987	408.89917544759584	27.049	0.16614	27.049	26.925	27.091	0					6	5	2	0	0	0	0.31942	1	4542	4542		6.1918	0	1	22196			59166	5881	33996	33997	72114	72114					0.07413021864181246
YLVYANKLK	9	Unmodified	_YLVYANKLK_					0	0	0			REV__chr7:93468806-93472375|399|12.72|0.37|5.11|-|0|CALCR,CALCR|1	REV__chr7:93468806-93472375|399|12.72|0.37|5.11|-|0|CALCR,CALCR|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.796875	2	556.329142	1110.64373	0.27875	0.00015507	-0.33482	-0.00018627	-0.056075	-3.1196E-05	556.3288651044268	40.114	0.50158	40.114	39.858	40.36	0					32	17	2	0	0	0	0.24739	1	8549	8549		13.508	0.97634	1	351520	+		59167	13221	33997	33998	72115	72115					0.0928347940812273
YLVYANKLK	9	Unmodified	_YLVYANKLK_					0	0	0			REV__chr7:93468806-93472375|399|12.72|0.37|5.11|-|0|CALCR,CALCR|1	REV__chr7:93468806-93472375|399|12.72|0.37|5.11|-|0|CALCR,CALCR|1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	555.7967529296875	2	556.329142	1110.64373	0.487	0.00027093	-0.47788	-0.00026586	0.0091214	5.0745E-06	556.3288734376869	39.872	0.5081	39.964	39.72	40.228	0.09267					38	17	3	0	0	0	0.24739	1	8494	8494		13.508	0.97634	1	332250	+		59168	13221	33997	33998	72116	72116					0.0928347940812273
YLWIYAFI	8	Unmodified	_YLWIYAFI_					0	0	0			REV__ENSG00000100678|ENST00000356921|SLC8A3	REV__ENSG00000100678|ENST00000356921|SLC8A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3175659179688	2	544.794404	1087.57425	0.38252	0.00020839	-2.5632	-0.0013964	-2.1807	-0.001188	545.2952916952436	118.77	0.26559	118.74	118.65	118.91	-0.024147					47	33	2	0	0	0	0.34434	1	30712	30712		0.79363	0	1	34926	+		59169	14223	33998	33999	72117	72117					0.03397020459374289
YLWKMPLK	8	Unmodified	_YLWKMPLK_					0	0	0			REV__ENST00000370303.4_1_1:93580250-93580589:+|nuORF	REV__ENST00000370303.4_1_1:93580250-93580589:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3106079101562	2	539.809531	1077.60451	0.09012	4.8648E-05	-0.94354	-0.00050933	-0.85342	-0.00046068	539.80915817781	12.602	0.38713	12.535	12.253	12.64	-0.067496					17	12	2	0	0	0	0.46022	1	181	181		2.3027	0	1	56877	+		59170	20375	33999	34000	72118	72118					0.06881055852909412
YLWLVLAAF	9	Unmodified	_YLWLVLAAF_					0	0	0			REV__ENST00000590168.5_1_17:74467717-74469013:-|nuORF	REV__ENST00000590168.5_1_17:74467717-74469013:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7979736328125	2	548.315503	1094.61645	0.56718	0.000311	-0.23966	-0.00013141	0.32752	0.00017959	548.3153929606872	66.438	0.64984	66.438	66.068	66.717	0					38	22	2	0	0	0	0.24542	1	16533	16533		9.3474	0	1	524570	+		59171	15425	34000	34001	72119	72119					0.07292995867737773
YLWMCECH	8	Unmodified	_YLWMCECH_					0	0	0		ENST00000567535.5_1_15:75287957-75305364:+|nuORF	ENST00000567535.5_1_15:75287957-75305364:+|nuORF	ENST00000567535.5_1_15:75287957-75305364:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.778076171875	2	542.706091	1083.39763	0.16658	9.0404E-05	-2.3931	-0.0012988	-2.2265	-0.0012084	542.7047452547768	14.493	0.13801	14.493	14.423	14.561	0					6	4	2	0	0	0	0.34434	1	745	745		0.79363	0	1	14919			59172	11994	34001	34002	72120	72120					-0.1407342302923098
YLWNWCSI	8	Unmodified	_YLWNWCSI_					0	0	0		ENST00000495272.5_1_1:95705378-95709907:+|nuORF	ENST00000495272.5_1_1:95705378-95709907:+|nuORF	ENST00000495272.5_1_1:95705378-95709907:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8074951171875	2	542.74967	1083.48479	0.57729	0.00031333	-1.3582	-0.00073715	-0.78088	-0.00042382	542.7490306636556	80.332	0.39894	80.305	80.006	80.405	-0.026825					19	13	2	0	0	0	0.34319	1	20857	20857		5.7604	0	1	99018			59173	11218	34002	34003	72121	72121					-0.05361557491642088
YLWVLGPI	8	Unmodified	_YLWVLGPI_					0	0	0		ABCC6|p.R987Lfs*25|1|0.2|ENSG00000091262|chr16:16169681-16169681|C/-|frameshift_variant;ABCC6|p.R1418Gfs*46|1|0.12|ENSG00000091262|chr16:16150729-16150729|G/-|frameshift_variant;ENSG00000091262|ENST00000205557|ABCC6;ENST00000574094.5_1_16:16275679-16317348:-|nuORF;nc|ENSG00000091262|O95255-3|ABCC6;ENST00000526069.1_1_16:14915456-14916883:-|nuORF;nc|ENSG00000091262|O95255-2|ABCC6;ENST00000542005.2_1_16:14916664-14918526:-|nuORF	ABCC6|p.R987Lfs*25|1|0.2|ENSG00000091262|chr16:16169681-16169681|C/-|frameshift_variant	ABCC6|p.R987Lfs*25|1|0.2|ENSG00000091262|chr16:16169681-16169681|C/-|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.79156494140625	2	480.781296	959.54804	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.51	1	80.483	79.983	80.983	-0.026825								0	0	0	0.34461	1	20910	20910		17.087	5.9721	1				59174	2	34003	34004	72122	72122					0.06664751287883064
YLYAALPPLTL	11	Unmodified	_YLYAALPPLTL_					0	0	0			REV__ENSG00000244165|ENST00000321826|P2RY11	REV__ENSG00000244165|ENST00000321826|P2RY11	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	412.23162841796875	3	412.240914	1233.70091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.058	1	34.125	33.625	34.625	0.06636								0	0	0	0.37347	1	6675	6675		3.0723	0.077021	1		+		59175	19199	34004	34005	72123	72123					0.09340901893824594
YLYALYLIW	9	Unmodified	_YLYALYLIW_					0	0	0		ENSG00000099219|ENST00000339450|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	406.21795654296875	3	406.558354	1216.65323	-0.18225	-7.4095E-05	0.86665	0.00035234	0.6844	0.00027825	406.5590885487663	42.65	0.48605	42.741	42.47	42.956	0.091362					22	17	2	0	0	0	0.25431	1	9341	9341		5.7319	0	1	199450			59176	1478	34005	34006	72124	72124					0.05357247693655154
YLYALYLIW	9	Unmodified	_YLYALYLIW_					0	0	0		ENSG00000099219|ENST00000339450|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	406.558354	1216.65323	-0.20952	-8.5183E-05	-2.5718	-0.0010456	-2.7813	-0.0011308	406.55735068595715	42.545	0.2685	42.63	42.462	42.731	0.085201	-0.055586	-0.00040034	NaN	5.7319	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139320			59177	1478	34005	34006							0.05357247693655154
YLYAPTDGVVT	11	Unmodified	_YLYAPTDGVVT_					0	0	0			REV__ENSG00000181027|ENST00000318584|FKRP	REV__ENSG00000181027|ENST00000318584|FKRP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.81884765625	2	599.803154	1197.59175	0.55496	0.00033287	-0.85469	-0.00051265	-0.29973	-0.00017978	599.802479453378	57.583	0.52289	57.583	57.246	57.768	0					27	18	2	0	0	0	0.32293	1	13821	13821		18.146	8.0724	1	332350	+		59178	18130	34006	34007	72125	72125					0.0008627120369055774
YLYGKELLLK	10	Unmodified	_YLYGKELLLK_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	620.372802734375	2	620.371007	1238.72746	0.08474	5.257E-05	1.292	0.00080152	1.3767	0.00085409	620.3720626171662	92.694	0.57055	92.783	92.364	92.934	0.089195					53	40	2	0	0	0	0.40888	1	24645	24645		1.8442	0.19162	1	151010	+		59179	18755	34007	34008	72126	72126					0.1176459078519656
YLYGKIKKTLP	11	Unmodified	_YLYGKIKKTLP_					0	0	0		ENSG00000106236|ENST00000265634|NPTX2	ENSG00000106236|ENST00000265634|NPTX2	ENSG00000106236|ENST00000265634|NPTX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.93975830078125	3	441.939346	1322.79621	0.092096	4.0701E-05	0.641	0.00028328	0.73309	0.00032398	441.9397146623042	49.469	1.1725	49.501	48.852	50.025	0.032043					137	42	4	0	0	0	0.4745	1	11454	11454		1.4551	0.12547	1	865110			59180	2062	34008	34009	72127	72127					0.1477225508488118
YLYICFCRL	9	Unmodified	_YLYICFCRL_					0	0	0			REV__ENST00000359358.8_1_18:30253057-30253159:-|nuORF	REV__ENST00000359358.8_1_18:30253057-30253159:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.3215942382812	2	597.29593	1192.57731	0.38716	0.00023125	-1.6498	-0.0009854	-1.2626	-0.00075415	597.294986552114	69.848	0.38467	69.914	69.717	70.101	0.06604					22	13	2	0	0	0	0.25417	1	17664	17664		8.5933	1.304	1	79709	+		59181	20243	34009	34010	72128	72128					-0.01127795749789584
YLYILRYKT	9	Unmodified	_YLYILRYKT_					0	0	0			REV__nc|ENSG00000136603|P12757-2|SKIL	REV__nc|ENSG00000136603|P12757-2|SKIL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.23187255859375	3	411.572775	1231.69649	0.32613	0.00013423	0.80638	0.00033188	1.1325	0.00046611	411.90654354546047	34.057	0.35464	34.057	33.865	34.22	0					20	12	2	0	0	0	0.25843	1	6656	6656		5.7319	1.5423	1	54310	+		59182	23001	34010	34011	72129	72129					0.08991437470922392
YLYKGNNWW	9	Unmodified	_YLYKGNNWW_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.7349853515625	2	622.298373	1242.58219	0.35622	0.00022167	-3.1224	-0.0019431	-2.7662	-0.0017214	622.7988625632682	66.647	0.53424	66.647	66.514	67.048	0					38	18	3	0	0	0	0.25066	1	16737	16737		11.64	1.5664	1	278100			59183	923	34011	34012	72130	72130					-0.02939452291161615
YLYLCLMYK	9	Unmodified	_YLYLCLMYK_					0	0	0			REV__ENST00000263461.10_1_10:122668592-122668682:+|nuORF	REV__ENST00000263461.10_1_10:122668592-122668682:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.22119140625	3	403.873068	1208.59737	-0.086343	-3.4872E-05	-2.8526	-0.0011521	-2.939	-0.001187	403.87172249700876	32.117	0.17522	32.158	32.059	32.234	0.040993					8	5	2	0	0	0	0.259	1	6069	6069		2.7352	0.64919	1	62598	+		59184	19621	34012	34013	72131	72131					0.0014195519015629543
YLYLCLMYK	9	Unmodified	_YLYLCLMYK_					0	0	0			REV__ENST00000263461.10_1_10:122668592-122668682:+|nuORF	REV__ENST00000263461.10_1_10:122668592-122668682:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	403.873068	1208.59737	0.16137	6.5173E-05	-6.5546	-0.0026472	-6.3932	-0.002582	404.20444286010047	32.329	0.27368	32.384	32.26	32.534	0.055313	0.11323	-0.0018282	NaN	2.7352	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82192	+		59185	19621	34012	34013							0.0014195519015629543
YLYLKLTL	8	Unmodified	_YLYLKLTL_					0	0	0		nc|ENSG00000115183|Q9C0D5-2|TANC1;TANC1|p.S1845Vfs*14|1|0.11|ENSG00000115183|chr2:159230958-159230959|-/GT|frameshift_variant;ENSG00000115183|ENST00000263635|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	nc|ENSG00000115183|Q9C0D5-2|TANC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.8028564453125	2	513.815336	1025.61612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.427	1	66.414	65.914	66.914	-0.013588								0	0	0	0.36961	1	16615	16615		5.7604	0	1				59186	2613	34013	34014	72132	72132					0.10433576147875101
YLYLSDNQL	9	Unmodified	_YLYLSDNQL_					0	0	0		nc|ENSG00000100399|Q6NUI6-2|CHADL;ENSG00000100399|ENST00000216241|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.33251953125	2	564.782222	1127.54989	0.5711	0.00032255	-3.4954	-0.0019741	-2.9243	-0.0016516	565.2798736017842	66.137	0.62843	66.221	65.916	66.544	0.083832					53	22	4	0	0	0	0.22596	1	16468	16468		21.747	2.3076	1	241040			59187	1588	34014	34015	72133	72133					-0.008782844848155946
YLYRFFQM	8	Unmodified	_YLYRFFQM_					0	0	0			REV__ENST00000509825.1_1_4:85672578-85676547:-|nuORF	REV__ENST00000509825.1_1_4:85672578-85676547:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.7449340820312	2	584.28642	1166.55829	0.41288	0.00024124	0.12456	7.2777E-05	0.53744	0.00031402	584.2854485310673	64.02	0.91171	64.113	63.618	64.53	0.092888					47	32	2	0	0	0	0.34046	1	15975	15975		14.582	2.0501	1	104580	+		59188	17072	34015	34016	72134	72134					-0.018330090491872397
YLYRVFCRL	9	Unmodified	_YLYRVFCRL_					0	0	0		DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant;ENSG00000178105|ENST00000322536|DDX10	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	DDX10|p.M592Ifs*47|1|0.03|ENSG00000178105|chr11:108723272-108723273|-/CTTAC|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.2087097167969	3	411.558471	1231.65358	0.065775	2.707E-05	1.5546	0.0006398	1.6204	0.00066687	411.5593489676228	36.049	1.9049	36.049	35.52	37.424	0					188	68	5	0	0	0	0.25066	1	7178	7178		7.609	1.4171	1	15538000			59189	260	34016	34017	72135	72135					0.047023441418787115
YLYTWDTL	8	Unmodified	_YLYTWDTL_					0	0	0		ENSG00000154269|ENST00000357639|ENPP3;chr6:131726200-131737355|507|34.85|0.76|5.53|+|ENST00000358229|ENPP3,ENPP3;ENST00000494023.1_1_6:131979469-131996330:+|nuORF;ENST00000427707.5_1_6:131962606-131995523:+|nuORF	ENSG00000154269|ENST00000357639|ENPP3	ENSG00000154269|ENST00000357639|ENPP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2958374023438	2	537.760758	1073.50696	0.63535	0.00034166	1.2418	0.00066781	1.8772	0.0010095	537.7611542924841	82.678	0.40786	82.678	82.436	82.844	0					35	14	3	0	0	0	0.31934	1	21561	21561		24.674	5.2349	1	542540			59190	5119	34017	34018	72136	72136					-0.02685054542234866
YLYYASIF	8	Unmodified	_YLYYASIF_					0	0	0			REV__nc|ENSG00000070614|P52848-2|NDST1	REV__nc|ENSG00000070614|P52848-2|NDST1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	520.3472290039062	2	520.260394	1038.50623	0.51371	0.00026726	-4.3841	-0.0022809	-3.8704	-0.0020136	520.2583212524373	72.471	0.26477	72.471	72.374	72.639	0					10	9	2	0	0	0	0.3225	1	18479	18479		22.453	0.70599	1	66005	+		59191	13730	34018	34019	72137	72137					-0.011478491913067046
YMCSFQKFRES	11	Unmodified	_YMCSFQKFRES_					0	0	0		ENST00000434603.2_1_11:75316186-75316648:-|nuORF	ENST00000434603.2_1_11:75316186-75316648:-|nuORF	ENST00000434603.2_1_11:75316186-75316648:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.2480773925781	3	475.881174	1424.62169	-0.04075	-1.9392E-05	0.64073	0.00030491	0.59998	0.00028552	476.2152504151226	19.37	0.50161	19.37	19.125	19.627	0					28	17	3	0	0	0	0.33348	1	2242	2242		0.40827	0.24894	1	29448			59192	10499	34019	34020	72138	72138					-0.07363436394257405
YMCSFQKFRES	11	Unmodified	_YMCSFQKFRES_					0	0	0		ENST00000434603.2_1_11:75316186-75316648:-|nuORF	ENST00000434603.2_1_11:75316186-75316648:-|nuORF	ENST00000434603.2_1_11:75316186-75316648:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	475.881174	1424.62169	0.093053	4.4282E-05	3.1446	0.0014964	3.2376	0.0015407	475.88310790997855	19.18	0.25774	19.064	18.947	19.205	-0.11592	-0.15318	0.0016676	NaN	0.40827	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26565			59193	10499	34019	34020							-0.07363436394257405
YMFHDGQYI	9	Unmodified	_YMFHDGQYI_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.7418212890625	2	587.255317	1172.49608	0.32039	0.00018815	0.6126	0.00035975	0.93299	0.00054791	587.2555400769158	70.589	0.3932	70.65	70.434	70.827	0.060783					30	13	3	0	0	0	0.25323	1	17939	17939		10.074	0	1	260010			59194	8109	34020	34021	72139	72139					-0.08326780188167504
YMHSVETV	8	Unmodified	_YMHSVETV_					0	0	0		MER47A_dup1739|chr11:114314732-114315040:+|1.9862550910181491|0.3000904151932887|2.73|534.0|6|2|sense	MER47A_dup1739|chr11:114314732-114315040:+|1.9862550910181491|0.3000904151932887|2.73|534.0|6|2|sense	MER47A_dup1739|chr11:114314732-114315040:+|1.9862550910181491|0.3000904151932887|2.73|534.0|6|2|sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.223388671875	2	483.223485	964.432418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.118	1	84.118	83.618	84.618	0								0	0	0	0.36961	1	22036	22036		5.7604	2.8712	1				59195	12534	34021	34022	72140	72140					-0.05122140625257998
YMIGKRVLTL	10	Unmodified	_YMIGKRVLTL_					0	0	0		ENST00000289371.10_1_2:99999292-100006235:+|nuORF	ENST00000289371.10_1_2:99999292-100006235:+|nuORF	ENST00000289371.10_1_2:99999292-100006235:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8576049804688	2	597.357376	1192.7002	0.51945	0.0003103	0.56717	0.0003388	1.0866	0.0006491	597.3586078268477	90.167	1.2978	90.167	89.63	90.927	0.0003891					299	105	4	0	0	0	0.39935	1	24108	24108		3.5965	0	1	970830			59196	9148	34022	34023	72141	72141					0.11155783973163125
YMKVIERAA	9	Unmodified	_YMKVIERAA_					0	0	0		ENSG00000198042|ENST00000360128|MAK16;ENST00000517567.5_1_8:33346262-33346340:+|nuORF;ENST00000520763.5_1_8:33342724-33346658:+|nuORF	ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.8002319335938	2	540.797152	1079.57975	0.71212	0.00038511	2	0.0010816	2.7121	0.0014667	541.3006274822164	91.374	1.0572	91.375	91.185	92.242	0.00046539					132	68	4	0	0	0	0.30166	1	24301	24301		8.5933	0	1	252290			59197	8030	34023	34024	72142	72142					0.043143759795157166
YMNKVLQK	8	Unmodified	_YMNKVLQK_					0	0	0		ENST00000370487.4_1_20:61431489-61431786:+|nuORF	ENST00000370487.4_1_20:61431489-61431786:+|nuORF	ENST00000370487.4_1_20:61431489-61431786:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.9855346679688	2	512.28642	1022.55829	0.32378	0.00016587	0.45906	0.00023517	0.78284	0.00040104	512.7893799326275	94.477	0.12797	94.475	94.404	94.532	-0.0020142					15	10	2	0	0	0	0.34319	1	25214	25214		5.7604	0	1	45430			59198	9801	34024	34025	72143	72143					0.04790990950834839
YMPKQLYKYTL	11	Unmodified	_YMPKQLYKYTL_					0	0	0			REV__nc|ENSG00000157404|P10721-2|KIT	REV__nc|ENSG00000157404|P10721-2|KIT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.7663879394531	3	483.259979	1446.75811	0.32879	0.00015889	-0.49643	-0.0002399	-0.16764	-8.1014E-05	483.25974982938004	38.363	0.60113	38.46	38.266	38.867	0.097527					43	21	3	0	0	0	0.3322	1	8032	8032		2.6312	0	1	309660	+		59199	16783	34025	34026	72144	72144					0.052600011079221076
YMPTVNSLP	9	Unmodified	_YMPTVNSLP_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2536926269531	2	511.254785	1020.49502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.66	1	102.66	102.16	103.16	-0.0033646								0	0	0	0.24715	1	27331	27331		7.2892	1.0834	1				59200	1303	34026	34027	72145	72145					-0.01440994557083286
YMSVVVDGQV	10	Unmodified	_YMSVVVDGQV_					0	0	0			REV__nc|ENSG00000116675|O75061-4|DNAJC6	REV__nc|ENSG00000116675|O75061-4|DNAJC6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.7710571289062	2	548.7708	1095.52705	0.68828	0.00037771	-0.45773	-0.00025119	0.23055	0.00012652	548.7705442860566	20.798	0.47783	20.745	20.584	21.062	-0.052912					25	16	2	0	0	0	0.32054	1	2648	2648		3.2813	0.97858	1	100980	+		59201	14930	34027	34028	72146	72146					-0.016896268739174047
YMWTINNFSF	10	Unmodified	_YMWTINNFSF_					0	0	0		ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	ENST00000513080.5_1_17:47699309-47700178:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	441.5823669433594	3	441.533991	1321.58014	0.32798	0.00014481	-1.2469	-0.00055055	-0.91893	-0.00040574	441.8671097934961	29.679	0.14148	29.679	29.633	29.774	0					6	4	2	0	0	0	0.32051	1	5327	5327		3.8763	0	1	24468			59202	2987	34028	34029	72147	72147					-0.06778249091280486
YNAMICYQFL	10	Unmodified	_YNAMICYQFL_					0	0	0			REV__ENSG00000080293|ENST00000019103|SCTR	REV__ENSG00000080293|ENST00000019103|SCTR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.28857421875	2	633.288302	1264.56205	0.57346	0.00036317	1.4226	0.00090091	1.9961	0.0012641	633.288737525891	53.785	0.39917	53.775	53.637	54.036	-0.0096054					24	14	2	0	0	0	0.34795	1	12744	12744		13.042	3.6593	1	372540	+		59203	13884	34029	34030	72148	72148					-0.05964707337625441
YNAPTDHGLCI	11	Carbamidomethyl (C)	_YNAPTDHGLC(Carbamidomethyl (C))I_	YNAPTDHGLC(1)I		YNAPTDHGLC(48)I		0	1	0		nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-4|GRB10;ENSG00000106070|ENST00000401949|GRB10	nc|ENSG00000106070|Q13322-3|GRB10	nc|ENSG00000106070|Q13322-3|GRB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.7882690429688	2	630.787512	1259.56047	0.39728	0.0002506	0.54444	0.00034342	0.94171	0.00059402	630.7878879348217	58.802	0.42828	58.802	58.595	59.024	0					29	14	3	0	0	0	0.069	1	14280	14280		47.749	22.758	1	326650			59204	2055	34030	34031	72149	72149	2				-0.05892625102023885
YNAPTDHGLCI	11	Carbamidomethyl (C)	_YNAPTDHGLC(Carbamidomethyl (C))I_	YNAPTDHGLC(1)I		YNAPTDHGLC(48)I		0	1	0		nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-4|GRB10;ENSG00000106070|ENST00000401949|GRB10	nc|ENSG00000106070|Q13322-3|GRB10	nc|ENSG00000106070|Q13322-3|GRB10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.7882690429688	2	630.787512	1259.56047	0.31357	0.0001978	0.40444	0.00025512	0.71801	0.00045291	630.7878046848122	58.645	0.47923	58.737	58.474	58.953	0.091305					39	16	3	0	0	0	0.069	1	14220	14220		47.749	22.758	1	357690			59205	2055	34030	34031	72150	72150	2				-0.05892625102023885
YNAPTDHGLCI	11	Carbamidomethyl (C)	_YNAPTDHGLC(Carbamidomethyl (C))I_					0	1	0		nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-4|GRB10;ENSG00000106070|ENST00000401949|GRB10	nc|ENSG00000106070|Q13322-3|GRB10	nc|ENSG00000106070|Q13322-3|GRB10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	630.787512	1259.56047	0.43596	0.000275	1.3235	0.00083485	1.7595	0.0011099	630.7884257523842	58.905	0.43171	58.891	58.712	59.144	-0.014267	0.08116	0.00070028	NaN	47.749	34	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	477460			59206	2055	34030	34031			2				-0.05892625102023885
YNCTAWNSF	9	Unmodified	_YNCTAWNSF_					0	0	0		nc|ENSG00000149571|Q8IZU9-2|KIRREL3;nc|ENSG00000183853|Q96J84-3|KIRREL1;ENSG00000183853|ENST00000359209|KIRREL1;nc|ENSG00000183853|Q96J84-2|KIRREL1;ENSG00000149571|ENST00000525144|KIRREL3	nc|ENSG00000149571|Q8IZU9-2|KIRREL3	nc|ENSG00000149571|Q8IZU9-2|KIRREL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8265380859375	2	553.224017	1104.43348	0.32816	0.00018154	-0.19437	-0.00010753	0.13379	7.4015E-05	553.2244676143403	65.439	0.62721	65.439	65.218	65.845	0					32	22	2	0	0	0	0.24688	1	16392	16392		14.838	4.6549	1	89944			59207	4877	34031	34032	72151	72151					-0.1145592625637164
YNEFLLAYE	9	Unmodified	_YNEFLLAYE_					0	0	0		ENSG00000163554|ENST00000643759|SPTA1;nc|ENSG00000163554|P02549-2|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	ENSG00000163554|ENST00000643759|SPTA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.7855224609375	2	581.276772	1160.53899	0.31087	0.0001807	-1.6377	-0.00095197	-1.3268	-0.00077127	581.2760255783213	81.649	0.47969	81.625	81.351	81.831	-0.02404					33	21	2	0	0	0	0.25431	1	21281	21281		9.3831	0	1	194650			59208	5700	34032	34033	72152	72152					-0.03485686859107773
YNEKKFIF	8	Unmodified	_YNEKKFIF_					0	0	0		ENSG00000157131|ENST00000361249|C8A	ENSG00000157131|ENST00000361249|C8A	ENSG00000157131|ENST00000361249|C8A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.79150390625	2	544.792392	1087.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.41	1	119.41	118.91	119.91	0								0	0	0	0.37992	1	30810	30810		0.79363	0	1				59209	5283	34033	34034	72153	72153					0.029949309656331025
YNEKKFIF	8	Unmodified	_YNEKKFIF_					0	0	0		ENSG00000157131|ENST00000361249|C8A	ENSG00000157131|ENST00000361249|C8A	ENSG00000157131|ENST00000361249|C8A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3168334960938	2	544.792392	1087.57023	0.56632	0.00030853	0.99087	0.00053982	1.5572	0.00084834	545.2951229535081	92.982	0.4832	93.071	92.777	93.26	0.089195					75	44	2	0	0	0	0.3366	1	24669	24669		18.135	3.5533	1	126920			59210	5283	34033	34034	72154	72154					0.029949309656331025
YNEPLKPKDK	10	Unmodified	_YNEPLKPKDK_					0	0	0			REV__ENSG00000158290|ENST00000371322|CUL4B	REV__ENSG00000158290|ENST00000371322|CUL4B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.7625122070312	2	616.337695	1230.66084	0.23542	0.0001451	-0.52882	-0.00032593	-0.29341	-0.00018084	616.3372000260833	68.085	0.50926	68.069	67.838	68.348	-0.016296					42	17	4	0	0	0	0.32054	1	17176	17176		3.2813	0	1	257470	+		59211	16807	34034	34035	72155	72155					0.05473355223261933
YNHLCRCI	8	Unmodified	_YNHLCRCI_					0	0	0			REV__ENSG00000113319|ENST00000265080|RASGRF2	REV__ENSG00000113319|ENST00000265080|RASGRF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.8374328613281	2	511.238947	1020.46334	0.2859	0.00014616	2.9187	0.0014922	3.2046	0.0016383	511.2404356394625	39.274	0.38103	39.374	39.212	39.593	0.099407					18	13	2	0	0	0	0.34337	1	8302	8302		5.2307	0.47466	1	260890	+		59212	14805	34035	34036	72156	72156					-0.04607265792014914
YNIASLVRL	9	Unmodified	_YNIASLVRL_					0	0	0		ENSG00000180901|ENST00000322444|KCTD2	ENSG00000180901|ENST00000322444|KCTD2	ENSG00000180901|ENST00000322444|KCTD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7113037109375	2	524.811116	1047.60768	0.502	0.00026346	0.7124	0.00037387	1.2144	0.00063733	524.8112462714627	68.977	0.45145	68.958	68.79	69.242	-0.019157					23	15	2	0	0	0	0.24429	1	17383	17383		18.373	3.5348	1	101710			59213	7212	34036	34037	72157	72157					0.08578022231290561
YNIASLVRL	9	Unmodified	_YNIASLVRL_					0	0	0		ENSG00000180901|ENST00000322444|KCTD2	ENSG00000180901|ENST00000322444|KCTD2	ENSG00000180901|ENST00000322444|KCTD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	524.811116	1047.60768	0.39572	0.00020768	-6.4636	-0.0033922	-6.0679	-0.0031845	525.3067607426482	69.246	0.13937	69.246	69.174	69.313	0	0.1803	-0.0076034	NaN	18.373	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53188			59214	7212	34036	34037							0.08578022231290561
YNIEQEQKL	9	Unmodified	_YNIEQEQKL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.377197265625	2	582.798403	1163.58225	0.19719	0.00011492	0.92452	0.00053881	1.1217	0.00065373	582.7989006296914	38.254	0.56248	38.254	38.034	38.597	0					37	19	2	0	0	0	0.00072704	1	7968	7968		117.84	62.335	1	1319600			59215	4111	34037	34038	72158	72158					0.007005029181982536
YNIEQEQKL	9	Unmodified	_YNIEQEQKL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.3772583007812	2	582.798403	1163.58225	0.34156	0.00019906	0.89924	0.00052408	1.2408	0.00072314	582.7988924778697	38.185	0.55718	38.276	38.011	38.568	0.090881					35	19	2	0	0	0	0.0071872	1	7938	7938		83.278	43.039	1	1328500			59216	4111	34037	34038	72159	72159					0.007005029181982536
YNIEQEQKL	9	Unmodified	_YNIEQEQKL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.3773193359375	2	582.798403	1163.58225	0.28363	0.0001653	-0.72246	-0.00042105	-0.43883	-0.00025575	582.7989097906503	38.045	0.96753	38.142	37.682	38.65	0.097527					127	34	6	0	0	0	0.0046407	1	7911	7911		92.201	58.756	1	1182700			59217	4111	34037	34038	72160	72160					0.007005029181982536
YNIETRSSI	9	Unmodified	_YNIETRSSI_					0	0	0			REV__MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|58|2|sense	REV__MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|58|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3458251953125	2	541.77747	1081.54039	0.60963	0.00033029	1.9197	0.0010401	2.5293	0.0013703	542.2795445378707	49.332	0.93604	49.332	48.827	49.763	0					72	33	3	0	0	0	0.23235	1	11317	11317		16.149	0	1	410120	+		59218	22858	34038	34039	72161	72161					0.0028794722966267727
YNIETRSSI	9	Unmodified	_YNIETRSSI_					0	0	0			REV__MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|58|2|sense	REV__MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|58|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.3458862304688	2	541.77747	1081.54039	0.43038	0.00023317	1.8622	0.0010089	2.2925	0.001242	542.2793558179633	49.294	0.80116	49.326	48.801	49.602	0.032047					60	28	3	0	0	0	0.20881	1	11293	11293		27.629	4.8925	1	362870	+		59219	22858	34038	34039	72162	72162					0.0028794722966267727
YNIEVVCEYI	10	Unmodified	_YNIEVVCEYI_					0	0	0		nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENSG00000180574|ENST00000538173|EIF2S3B;ENSG00000130741|ENST00000253039|EIF2S3	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.5242919921875	3	415.533768	1243.57948	0.31158	0.00012947	2.0508	0.00085219	2.3624	0.00098166	415.5347118326205	46.385	0.32853	46.437	46.3	46.629	0.052574					23	11	3	0	0	0	0.34325	1	10474	10474		8.4443	0.28878	1	316850			59220	3507	34039	34040	72163	72163					-0.03257088530972396
YNIGAILYKL	10	Unmodified	_YNIGAILYKL_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3429565429688	2	584.342249	1166.66995	1.0007	0.00058477	-0.43492	-0.00025414	0.56581	0.00033063	584.3418689438123	56.515	1.0442	56.496	56.239	57.283	-0.019077					96	37	4	0	0	0	0.21644	1	13682	13682		30.637	0	1	4779600	+		59221	18293	34040	34041	72164	72164					0.09327748579607942
YNIHFANMD	9	Unmodified	_YNIHFANMD_					0	0	0			REV__FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	REV__FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.320068359375	2	562.745116	1123.47568	0.35196	0.00019807	-0.89494	-0.00050362	-0.54297	-0.00030556	562.7443179729925	72.102	0.63819	72.075	71.819	72.457	-0.027275					55	22	4	0	0	0	0.2322	1	18306	18306		14.838	3.198	1	230820	+		59222	17194	34041	34042	72165	72165					-0.08111950847978733
YNIHFANMD	9	Unmodified	_YNIHFANMD_					0	0	0			REV__FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	REV__FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	562.745116	1123.47568	0.34836	0.00019604	-0.93014	-0.00052343	-0.58178	-0.0003274	562.7445848379306	72.001	0.52158	72.001	71.773	72.295	0	-0.048183	-0.00040979	NaN	14.838	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205650	+		59223	17194	34041	34042							-0.08111950847978733
YNIHFANMD	9	Unmodified	_YNIHFANMD_					0	0	0			REV__FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	REV__FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	562.745116	1123.47568	0.47828	0.00026915	-0.10702	-6.0225E-05	0.37126	0.00020892	562.7445010228428	72.015	0.43489	72.071	71.868	72.303	0.056572	0.022369	0.00051662	NaN	14.838	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198750	+		59224	17194	34041	34042							-0.08111950847978733
YNIILLLFN	9	Unmodified	_YNIILLLFN_					0	0	0			REV__ENSG00000196715|ENST00000360768|VKORC1L1	REV__ENSG00000196715|ENST00000360768|VKORC1L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.26708984375	2	561.831517	1121.64848	0.30621	0.00017204	0.70665	0.00039702	1.0129	0.00056906	561.8319887477237	70.488	0.44283	70.488	70.24	70.683	0					23	15	2	0	0	0	0.24913	1	17806	17806		12.532	3.9383	1	133490	+		59225	18682	34042	34043	72166	72166					0.09252363550899645
YNIKLKWTNQ	10	Unmodified	_YNIKLKWTNQ_					0	0	0		nc|ENSG00000080910|P36980-2|CFHR2;ENSG00000080910|ENST00000367415|CFHR2	nc|ENSG00000080910|P36980-2|CFHR2	nc|ENSG00000080910|P36980-2|CFHR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2738952636719	3	436.575067	1306.70337	0.29182	0.0001274	1.0829	0.00047277	1.3747	0.00060017	436.5755701219951	33.826	0.65866	33.826	33.589	34.247	0					40	23	2	0	0	0	0.31899	1	6611	6611		7.4771	0.43998	1	103210			59226	1171	34043	34044	72167	72167					0.06228750351533563
YNIMKRLA	8	Unmodified	_YNIMKRLA_					0	0	0			REV__ENST00000491328.1_1_6:81053374-81053518:+|nuORF	REV__ENST00000491328.1_1_6:81053374-81053518:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.2772521972656	2	504.786587	1007.55862	0.45908	0.00023174	1.876	0.00094695	2.335	0.0011787	504.7880207528987	53.931	0.62437	53.921	53.771	54.395	-0.0096092					27	22	2	0	0	0	0.42758	1	12749	12749		13.508	0	1	200320	+		59227	13930	34044	34045	72168	72168					0.055144106706848106
YNIPVIHAF	9	Unmodified	_YNIPVIHAF_					0	0	0		ENSG00000140961|ENST00000393306|OSGIN1	ENSG00000140961|ENST00000393306|OSGIN1	ENSG00000140961|ENST00000393306|OSGIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7107543945312	2	537.292559	1072.57057	0.63137	0.00033923	1.1602	0.00062334	1.7915	0.00096258	537.2930449095654	66.462	0.44673	66.462	66.183	66.63	0					29	15	2	0	0	0	0.089551	1	16625	16625		53.576	44.228	1	407990			59228	4345	34045	34046	72169	72169					0.0371835068551718
YNIPVIHAF	9	Unmodified	_YNIPVIHAF_					0	0	0		ENSG00000140961|ENST00000393306|OSGIN1	ENSG00000140961|ENST00000393306|OSGIN1	ENSG00000140961|ENST00000393306|OSGIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7107543945312	2	537.292559	1072.57057	0.48547	0.00026084	1.0008	0.0005377	1.4862	0.00079854	537.2928864777642	66.308	0.52515	66.392	66.134	66.659	0.083832					32	18	2	0	0	0	0.089551	1	16591	16591		44.407	29.825	1	490020			59229	4345	34045	34046	72170	72170					0.0371835068551718
YNIPVIHAF	9	Unmodified	_YNIPVIHAF_					0	0	0		ENSG00000140961|ENST00000393306|OSGIN1	ENSG00000140961|ENST00000393306|OSGIN1	ENSG00000140961|ENST00000393306|OSGIN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.7107543945312	2	537.292559	1072.57057	0.46458	0.00024962	1.4593	0.00078405	1.9239	0.0010337	537.2932987385892	66.404	0.49234	66.391	66.222	66.714	-0.013588					29	17	2	0	0	0	0.089551	1	16624	16624		53.576	32.704	1	488540			59230	4345	34045	34046	72171	72171					0.0371835068551718
YNIPWHWPKST	11	Unmodified	_YNIPWHWPKST_					0	0	0			REV__ENSG00000009830|ENST00000261534|POMT2	REV__ENSG00000009830|ENST00000261534|POMT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.90765380859375	3	476.906816	1427.69862	-0.051079	-2.436E-05	1.7153	0.00081804	1.6642	0.00079369	476.9073756643229	18.973	0.52911	18.973	18.738	19.267	0					44	18	3	0	0	0	0.47786	1	2082	2082		1.0136	0.088041	1	100350	+		59231	13409	34046	34047	72172	72172					0.001878662087392513
YNIPWHWPKST	11	Unmodified	_YNIPWHWPKST_					0	0	0			REV__ENSG00000009830|ENST00000261534|POMT2	REV__ENSG00000009830|ENST00000261534|POMT2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	476.906816	1427.69862	-0.051079	-2.436E-05	1.7153	0.00081804	1.6642	0.00079369	476.9073756643229	18.973	0.52911	18.973	18.738	19.267	0	-0.037627	7.6754E-05	NaN	1.0136	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100350	+		59232	13409	34046	34047							0.001878662087392513
YNITMFVEFF	10	Unmodified	_YNITMFVEFF_					0	0	0		nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-5|CSMD3	nc|ENSG00000164796|Q7Z407-4|CSMD3	nc|ENSG00000164796|Q7Z407-4|CSMD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.2738952636719	3	437.542375	1309.6053	0.35239	0.00015419	0.79175	0.00034642	1.1441	0.00050061	437.542733031733	33.795	0.26917	33.795	33.7	33.969	0					14	9	2	0	0	0	0.32068	1	6611	6611		3.5871	0.5148	1	120750			59233	5877	34047	34048	72173	72173					-0.03712194288709725
YNKAKRQCR	9	Unmodified	_YNKAKRQCR_					0	0	0			REV__nc|nan|Q8WVX3-2|C4orf3	REV__nc|nan|Q8WVX3-2|C4orf3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.32958984375	2	583.814199	1165.61384	0.42178	0.00024624	-0.16971	-9.9081E-05	0.25207	0.00014716	583.813998372616	54.121	0.76453	54.185	53.902	54.667	0.063202					62	28	3	0	0	0	0.27532	1	12972	12972		12.532	0	1	1202000	+		59234	23270	34048	34049	72174	72174					0.037662171911279074
YNKIHPVD	8	Unmodified	_YNKIHPVD_					0	0	0		ENSG00000100412|ENST00000216254|ACO2	ENSG00000100412|ENST00000216254|ACO2	ENSG00000100412|ENST00000216254|ACO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.67352294921875	2	493.258717	984.50288	0.21263	0.00010488	-0.056238	-2.774E-05	0.15639	7.714E-05	493.25899773961305	16.094	0.40347	16.094	15.892	16.295	0					28	13	3	0	0	0	0.344	1	1183	1183		2.5775	0	1	64316			59235	1591	34049	34050	72175	72175					0.010009007547068904
YNKNKIKG	8	Unmodified	_YNKNKIKG_					0	0	0		nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A	nc|ENSG00000144285|P35498-3|SCN1A	nc|ENSG00000144285|P35498-3|SCN1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.78228759765625	2	482.782359	963.550165	0.1768	8.5355E-05	-0.53697	-0.00025924	-0.36017	-0.00017388	482.7824227749158	26.924	0.62204	26.903	26.478	27.1	-0.021412					31	21	2	0	0	0	0.34131	1	4503	4503		12.532	1.732	1	127000			59236	4573	34050	34051	72176	72176					0.06693180025706624
YNLDKFRVL	9	Unmodified	_YNLDKFRVL_					0	0	0		ENST00000465906.5_1_10:6157393-6157516:+|nuORF;ENST00000476706.5_1_10:6154982-6157516:+|nuORF;ENSG00000134453|ENST00000379888|RBM17	ENST00000465906.5_1_10:6157393-6157516:+|nuORF	ENST00000465906.5_1_10:6157393-6157516:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.356689453125	2	584.329673	1166.64479	0.54768	0.00032003	-0.2315	-0.00013527	0.31618	0.00018476	584.8312256233263	84.671	0.10606	84.658	84.604	84.71	-0.01284					5	3	2	0	0	0	0.25431	1	22210	22210		9.3831	0	1	33072			59237	3787	34051	34052	72177	72177					0.06813693777030494
YNLDRGFRD	9	Unmodified	_YNLDRGFRD_					0	0	0			REV__ENST00000515481.5_1_5:179044503-179045371:-|nuORF	REV__ENST00000515481.5_1_5:179044503-179045371:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	578.29150390625	2	578.280712	1154.54687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.133	1	88.13	87.63	88.63	-0.0028381								0	0	0	0.19013	1	23255	23255		25.399	8.457	1		+		59238	15327	34052	34053	72178	72178					-0.024221148189553787
YNLFYWYEGLD	11	Unmodified	_YNLFYWYEGLD_					0	0	0		ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	ENSG00000123496|ENST00000243213|IL13RA2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.26788330078125	3	494.890721	1481.65033	-0.0027358	-1.3539E-06	-1.0245	-0.00050704	-1.0273	-0.00050839	494.89018782139283	35.482	0.43134	35.482	35.144	35.575	0					29	15	3	0	0	0	0.3333	1	7048	7048		1.3296	0	1	162220			59239	3109	34053	34054	72179	72179					-0.07122672221817083
YNLMNSAIIE	10	Unmodified	_YNLMNSAIIE_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.2880249023438	2	584.289356	1166.56416	0.32512	0.00018996	-2.3729	-0.0013864	-2.0477	-0.0011965	584.2885698500854	57.709	2.7743	57.709	57.323	60.098	0					299	97	6	0	0	0	0.15473	1	14192	14192		38.176	2.0485	1	98052000			59240	1632	34054	34055	72180	72180					-0.012459553281814806
YNLMNSAIIE	10	Unmodified	_YNLMNSAIIE_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2874145507812	2	584.289356	1166.56416	0.29265	0.00017099	-2.3365	-0.0013652	-2.0438	-0.0011942	584.2885505856126	57.507	2.8248	57.592	57.156	59.981	0.085617					316	101	6	0	0	0	0.12843	2	14147	14097;14147		41.84	9.5341	1	84754000			59241	1632	34054	34055	72181;72182	72182					-0.012459553281814806
YNLPKHLDVEM	11	Unmodified	_YNLPKHLDVEM_					0	0	0		nc|ENSG00000140367|Q8WVN8-2|UBE2Q2;nc|ENSG00000140367|Q8WVN8-3|UBE2Q2;ENSG00000140367|ENST00000267938|UBE2Q2	nc|ENSG00000140367|Q8WVN8-2|UBE2Q2	nc|ENSG00000140367|Q8WVN8-2|UBE2Q2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	454.2356872558594	3	453.56395	1357.67002	-0.11945	-5.4179E-05	-0.74232	-0.00033669	-0.86177	-0.00039087	453.56371498921845	31.207	0.11319	31.25	31.209	31.322	0.042364					5	3	2	0	0	0	0.33236	1	5801	5801		4.4062	1.3339	1	58820			59242	12727	34055	34056	72183	72183					0.005493805173045985
YNMETLTVPRL	11	Unmodified	_YNMETLTVPRL_					0	0	0			REV__nc|ENSG00000106443|O94880-2|PHF14	REV__nc|ENSG00000106443|O94880-2|PHF14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	445.6358947753906	3	446.235834	1335.68567	0.41262	0.00018413	-0.19247	-8.5886E-05	0.22015	9.824E-05	446.2363495228383	33.452	1.105	33.519	33.044	34.149	0.06636					74	39	3	0	0	0	0.3325	1	6680	6680		2.2527	1.0379	1	603130	+		59243	14521	34056	34057	72184	72184					0.03125667034350954
YNNSIHPPLH	10	Unmodified	_YNNSIHPPLH_					0	0	0			REV__ENST00000576646.7_1_17:1412470-1416845:-|nuORF	REV__ENST00000576646.7_1_17:1412470-1416845:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.3346557617188	2	596.298904	1190.58326	0.3752	0.00022373	1.3493	0.00080456	1.7245	0.0010283	596.8033744671682	62.737	0.29141	62.728	62.621	62.913	-0.0085526					15	10	2	0	0	0	0.31889	1	15470	15470		6.2058	0.47393	1	233200	+		59244	15566	34057	34058	72185	72185					-0.004412379222458185
YNQIATKEL	9	Unmodified	_YNQIATKEL_					0	0	0			REV__ENSG00000171759|ENST00000553106|PAH	REV__ENSG00000171759|ENST00000553106|PAH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.3143310546875	2	540.290214	1078.56587	1.1302	0.00061064	-1.215	-0.00065644	-0.084771	-4.5801E-05	540.2898380850902	47.053	0.1044	47.108	47.064	47.168	0.054371					5	3	2	0	0	0	0.2451	1	10648	10648		15.847	6.4997	1	104850	+		59245	17662	34058	34059	72186	72186					0.029734217520854145
YNQTLTPVL	9	Unmodified	_YNQTLTPVL_					0	0	0		nc|ENSG00000086200|Q9UI26-2|IPO11;ENSG00000086200|ENST00000325324|IPO11	nc|ENSG00000086200|Q9UI26-2|IPO11	nc|ENSG00000086200|Q9UI26-2|IPO11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2689819335938	2	524.787307	1047.56006	0.35402	0.00018579	1.3724	0.00072022	1.7264	0.000906	525.2887645603731	94.358	0.064857	94.358	94.3	94.365	0					6	4	2	0	0	0	0.25706	1	25152	25152		6.7232	0.99131	1	23217			59246	1278	34059	34060	72187	72187					0.038183232404207956
YNQTLTPVL	9	Unmodified	_YNQTLTPVL_					0	0	0		nc|ENSG00000086200|Q9UI26-2|IPO11;ENSG00000086200|ENST00000325324|IPO11	nc|ENSG00000086200|Q9UI26-2|IPO11	nc|ENSG00000086200|Q9UI26-2|IPO11	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	524.787307	1047.56006	0.60427	0.00031711	3.0128	0.0015811	3.6171	0.0018982	524.7891227763589	94.233	0.15124	94.232	94.157	94.309	-0.0008316	-0.063211	0.0001057	NaN	6.7232	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59407			59247	1278	34059	34060							0.038183232404207956
YNRCFRLQK	9	Unmodified	_YNRCFRLQK_					0	0	0			REV__ENSG00000154342|ENST00000284523|WNT3A	REV__ENSG00000154342|ENST00000284523|WNT3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.58746337890625	3	409.885358	1226.63425	-0.47749	-0.00019572	-3.7152	-0.0015228	-4.1927	-0.0017185	410.217245668891	34.555	0.31062	34.632	34.444	34.755	0.077377					12	10	2	0	0	0	0.25612	1	6764	6764		4.897	0	1	37143	+		59248	16662	34060	34061	72188	72188					0.029993878509458227
YNRYEYSRF	9	Unmodified	_YNRYEYSRF_					0	0	0			REV__ENST00000462772.1_1_2:67629954-67632183:+|nuORF	REV__ENST00000462772.1_1_2:67629954-67632183:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.3025512695312	2	649.301644	1296.58874	0.67303	0.000437	0.72389	0.00047002	1.3969	0.00090702	649.8035731836351	55.742	0.48533	55.813	55.535	56.02	0.070885					31	17	2	0	0	0	0.063853	1	13322	13322		47.749	13.347	1	1069700	+		59249	21236	34061	34062	72189	72189					-0.047695591304545815
YNRYEYSRF	9	Unmodified	_YNRYEYSRF_					0	0	0			REV__ENST00000462772.1_1_2:67629954-67632183:+|nuORF	REV__ENST00000462772.1_1_2:67629954-67632183:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.30224609375	2	649.301644	1296.58874	0.71856	0.00046656	0.27393	0.00017786	0.99249	0.00064443	649.3017705451358	55.949	0.51348	55.93	55.646	56.159	-0.019081					34	18	2	0	0	0	0.12642	2	13368	13368;13423		34.402	0	1	897130	+		59250	21236	34061	34062	72190;72191	72190					-0.047695591304545815
YNRYEYSRF	9	Unmodified	_YNRYEYSRF_					0	0	0			REV__ENST00000462772.1_1_2:67629954-67632183:+|nuORF	REV__ENST00000462772.1_1_2:67629954-67632183:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	649.301644	1296.58874	0.8392	0.0005449	0.44797	0.00029087	1.2872	0.00083576	649.3019831763521	55.745	0.59376	55.745	55.507	56.101	0	-0.084718	-0.0001356	NaN	47.749	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1173000	+		59251	21236	34061	34062							-0.047695591304545815
YNRYEYSRF	9	Unmodified	_YNRYEYSRF_					0	0	0			REV__ENST00000462772.1_1_2:67629954-67632183:+|nuORF	REV__ENST00000462772.1_1_2:67629954-67632183:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	649.301644	1296.58874	0.67303	0.000437	0.72389	0.00047002	1.3969	0.00090702	649.8035731836351	55.742	0.48533	55.813	55.535	56.02	0.070885	-0.015932	0.00022271	NaN	47.749	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1069700	+		59252	21236	34061	34062							-0.047695591304545815
YNRYEYSRF	9	Unmodified	_YNRYEYSRF_					0	0	0			REV__ENST00000462772.1_1_2:67629954-67632183:+|nuORF	REV__ENST00000462772.1_1_2:67629954-67632183:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	649.301644	1296.58874	0.71856	0.00046656	0.27393	0.00017786	0.99249	0.00064443	649.3017705451358	55.949	0.51348	55.93	55.646	56.159	-0.019081	0.10065	-0.00036161	NaN	47.749	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	897130	+		59253	21236	34061	34062							-0.047695591304545815
YNSCACGF	8	Unmodified	_YNSCACGF_					0	0	0		ENST00000468672.5_1_1:209929569-209932443:+|nuORF	ENST00000468672.5_1_1:209929569-209932443:+|nuORF	ENST00000468672.5_1_1:209929569-209932443:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	432.59747314453125	2	432.654381	863.294209	-0.49251	-0.00021309	2.6195	0.0011333	2.127	0.00092025	432.6578709223126	99.114	0.041153	99.114	99.089	99.131	0					5	4	2	0	0	0	0.34419	1	26523	26523		1.8442	1.8442	1	32588			59254	10841	34062	34063	72192	72192					-0.1429058714538769
YNSNRNLLT	9	Unmodified	_YNSNRNLLT_					0	0	0		Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|82|2|sense	Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|82|2|sense	Harlequin-int_dup67|chr1:171602819-171606351:+|2.7934060899183817|0.0115100540206365|7.92|524.0|82|2|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7728881835938	2	547.783087	1093.55162	0.67949	0.00037221	0.45369	0.00024852	1.1332	0.00062073	547.783061049424	26.747	0.44548	26.735	26.483	26.928	-0.01156					32	15	3	0	0	0	0.25314	1	4478	4478		15.847	0	1	209190			59255	12392	34063	34064	72193	72193					0.008587693238041538
YNSPFIKE	8	Unmodified	_YNSPFIKE_					0	0	0		SPATA17|p.R183I|1|0.45|ENSG00000162814|chr1:217774362-217774362|G/T|missense_variant	SPATA17|p.R183I|1|0.45|ENSG00000162814|chr1:217774362-217774362|G/T|missense_variant	SPATA17|p.R183I|1|0.45|ENSG00000162814|chr1:217774362-217774362|G/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.7813720703125	2	499.2531	996.491647	0.288	0.00014378	-2.1972	-0.001097	-1.9093	-0.0009532	499.2521275447084	26.521	0.29333	26.483	26.37	26.664	-0.038671					17	9	2	0	0	0	0.34039	1	4432	4432		15.847	0	1	108120			59256	23380	34064	34065	72194	72194					-0.006739213394212129
YNSPFIKE	8	Unmodified	_YNSPFIKE_					0	0	0		SPATA17|p.R183I|1|0.45|ENSG00000162814|chr1:217774362-217774362|G/T|missense_variant	SPATA17|p.R183I|1|0.45|ENSG00000162814|chr1:217774362-217774362|G/T|missense_variant	SPATA17|p.R183I|1|0.45|ENSG00000162814|chr1:217774362-217774362|G/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.78125	2	499.2531	996.491647	0.51706	0.00025814	-3.239	-0.0016171	-2.722	-0.001359	499.2517922542461	26.629	0.40144	26.607	26.439	26.841	-0.022238					19	13	2	0	0	0	0.34039	1	4477	4477		15.847	0	1	117780			59257	23380	34064	34065	72195	72195					-0.006739213394212129
YNSQIRRLK	9	Unmodified	_YNSQIRRLK_					0	0	0			REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3411254882812	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.06	1	116.06	115.56	116.56	0								0	0	0	0.2672	1	30060	30060		0.52476	0	1		+		59258	18239	34065	34066	72196	72196					0.09147016757128767
YNSQIRRLK	9	Unmodified	_YNSQIRRLK_					0	0	0			REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3438720703125	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.58	1	116.58	116.08	117.08	0								0	0	0	0.2672	1	30175	30175		0.52476	0	1		+		59259	18239	34065	34066	72197	72197					0.09147016757128767
YNSQIRRLK	9	Unmodified	_YNSQIRRLK_					0	0	0			REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3447265625	2	589.343646	1176.67274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.57	1	117.54	117.04	118.04	-0.024147								0	0	0	0.2672	1	30423	30423		0.52476	0	1		+		59260	18239	34065	34066	72198	72198					0.09147016757128767
YNSVANETFCL	11	Unmodified	_YNSVANETFCL_					0	0	0		ENST00000564350.1_1_15:89826403-89833569:+|nuORF;nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI	ENST00000564350.1_1_15:89826403-89833569:+|nuORF;nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.85626220703125	3	420.857023	1259.54924	-0.08635	-3.6341E-05	-2.0257	-0.00085252	-2.112	-0.00088886	420.85627104968955	41.42	0.35093	41.511	41.215	41.566	0.090248					21	12	2	0	0	0	0.35522	1	8926	8926		9.7643	1.4778	1	733450			59261	4314;11947	34066	34067	72199	72199					-0.07015447196158675
YNSWSCTSQL	10	Unmodified	_YNSWSCTSQL_					0	0	0			REV__ENST00000521130.1_1_5:168547122-168727722:-|nuORF	REV__ENST00000521130.1_1_5:168547122-168727722:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.2802124023438	2	594.753138	1187.49172	0.45849	0.00027269	-1.3738	-0.00081706	-0.91529	-0.00054437	594.752390271559	68.322	0.46681	68.322	68.074	68.541	0					34	17	3	0	0	0	0.3144	1	17225	17225		13.042	0	1	407000	+		59262	21896	34067	34068	72200	72200					-0.09452289401747294
YNTEQLLNT	9	Unmodified	_YNTEQLLNT_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L;nc|ENSG00000135801|O75529-2|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3755493164062	2	548.269478	1094.5244	0.45858	0.00025143	0.61042	0.00033468	1.069	0.0005861	548.2700458275264	32.895	0.52432	32.95	32.791	33.316	0.054375					25	18	2	0	0	0	0.25066	1	6419	6419		7.2892	0	1	141800			59263	3906	34068	34069	72201	72201					-0.019077590072356543
YNTEQLLNT	9	Unmodified	_YNTEQLLNT_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L;nc|ENSG00000135801|O75529-2|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	548.269478	1094.5244	0.35505	0.00019466	0.48456	0.00026567	0.83961	0.00046033	548.2700690515912	32.883	0.70687	32.883	32.749	33.456	0	-0.012699	5.8948E-05	NaN	7.2892	38	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155090			59264	3906	34068	34069							-0.019077590072356543
YNTHLCFFCL	10	Unmodified	_YNTHLCFFCL_					0	0	0		ENST00000398392.2_1_3:88105136-88105196:-|nuORF	ENST00000398392.2_1_3:88105136-88105196:-|nuORF	ENST00000398392.2_1_3:88105136-88105196:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.85614013671875	3	420.856188	1259.54674	-0.080353	-3.3817E-05	0.20438	8.6017E-05	0.12403	5.2199E-05	420.8561636163714	39.387	1.0702	39.479	39.105	40.176	0.09267					70	37	3	0	0	0	0.36002	1	8328	8328		6.1918	0.40842	1	388490			59265	10161	34069	34070	72202	72202					-0.07265574134817143
YNTHLCFFCL	10	Unmodified	_YNTHLCFFCL_					0	0	0		ENST00000398392.2_1_3:88105136-88105196:-|nuORF	ENST00000398392.2_1_3:88105136-88105196:-|nuORF	ENST00000398392.2_1_3:88105136-88105196:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	420.8558654785156	3	420.856188	1259.54674	0.075486	3.1769E-05	0.13967	5.8781E-05	0.21516	9.055E-05	420.8561319825754	39.488	1.0456	39.587	39.128	40.173	0.099407					76	37	3	0	0	0	0.33268	1	8297	8297		9.544	0	1	448140			59266	10161	34069	34070	72203	72203					-0.07265574134817143
YNTHLCFFCL	10	Unmodified	_YNTHLCFFCL_					0	0	0		ENST00000398392.2_1_3:88105136-88105196:-|nuORF	ENST00000398392.2_1_3:88105136-88105196:-|nuORF	ENST00000398392.2_1_3:88105136-88105196:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	420.856188	1259.54674	-0.33902	-0.00014268	0.51868	0.00021829	0.17967	7.5614E-05	420.8562855262592	39.683	0.89381	39.683	39.268	40.161	0	0.099801	0.00033918	NaN	9.544	79	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337630			59267	10161	34069	34070							-0.07265574134817143
YNTHLCFFCL	10	Unmodified	_YNTHLCFFCL_					0	0	0		ENST00000398392.2_1_3:88105136-88105196:-|nuORF	ENST00000398392.2_1_3:88105136-88105196:-|nuORF	ENST00000398392.2_1_3:88105136-88105196:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	420.856188	1259.54674	-0.080353	-3.3817E-05	0.20438	8.6017E-05	0.12403	5.2199E-05	420.8561636163714	39.387	1.0702	39.479	39.105	40.176	0.09267	-0.10385	-5.7643E-05	NaN	9.544	70	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388490			59268	10161	34069	34070							-0.07265574134817143
YNVLTSKRV	9	Unmodified	_YNVLTSKRV_					0	0	0		ENSG00000214595|ENST00000356458|EML6;nc|ENSG00000214595|Q6ZMW3-2|EML6	ENSG00000214595|ENST00000356458|EML6	ENSG00000214595|ENST00000356458|EML6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3299560546875	2	540.314023	1078.61349	0.78683	0.00042513	-0.21757	-0.00011755	0.56926	0.00030758	540.3136961527226	47.119	0.79321	47.119	46.84	47.634	0					69	27	4	0	0	0	0.31038	1	10757	10757		7.2892	0	1	1457800			59269	8386	34070	34071	72204	72204					0.07733120742932442
YNVQKRIRK	9	Unmodified	_YNVQKRIRK_					0	0	0			REV__nc|ENSG00000111642|Q14839-2|CHD4	REV__nc|ENSG00000111642|Q14839-2|CHD4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.261962890625	2	602.867289	1203.72002	0.54685	0.00032968	-0.60249	-0.00036322	-0.055639	-3.3543E-05	602.8668083854187	29.526	0.29618	29.539	29.389	29.685	0.012266					12	9	2	0	0	0	0.26257	1	5329	5329		0.52476	0	1	48159	+		59270	22942	34071	34072	72205	72205					0.12631296028121142
YNVQKRIRK	9	Unmodified	_YNVQKRIRK_					0	0	0			REV__nc|ENSG00000111642|Q14839-2|CHD4	REV__nc|ENSG00000111642|Q14839-2|CHD4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	602.867289	1203.72002	0.14517	8.7518E-05	0.016169	9.7475E-06	0.16134	9.7266E-05	602.8673721801036	29.584	0.20379	29.597	29.481	29.684	0.013474	0.029385	0.00032969	NaN	0.52476	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52634	+		59271	22942	34071	34072							0.12631296028121142
YNWDPKDAAS	10	Unmodified	_YNWDPKDAAS_					0	0	0		ENSG00000133124|ENST00000372129|IRS4;nc|ENSG00000133124|O14654|IRS4	ENSG00000133124|ENST00000372129|IRS4	ENSG00000133124|ENST00000372129|IRS4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.7587890625	2	583.759278	1165.504	0.5074	0.0002962	-0.91386	-0.00053348	-0.40646	-0.00023728	583.7583657030875	84.656	0.81081	84.737	84.446	85.257	0.080887					90	31	4	0	0	0	0.38233	1	22217	22217		6.7232	1.8262	1	897250			59272	3697	34072	34073	72206	72206					-0.07212929667048229
YNWRFVIWRPF	11	Unmodified	_YNWRFVIWRPF_					0	0	0		ENST00000560936.2_1_15:60687964-60688054:-|nuORF	ENST00000560936.2_1_15:60687964-60688054:-|nuORF	ENST00000560936.2_1_15:60687964-60688054:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7279052734375	3	528.613856	1582.81974	0.65726	0.00034744	0.31758	0.00016787	0.97483	0.00051531	528.6140188093971	53.134	0.46239	53.19	52.942	53.404	0.056255					37	16	3	0	0	0	0.33346	1	12464	12464		0.50596	0	1	783120			59273	11905	34073	34074	72207	72207					0.0516411364205851
YNWRFVIWRPF	11	Unmodified	_YNWRFVIWRPF_					0	0	0		ENST00000560936.2_1_15:60687964-60688054:-|nuORF	ENST00000560936.2_1_15:60687964-60688054:-|nuORF	ENST00000560936.2_1_15:60687964-60688054:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7283935546875	3	528.613856	1582.81974	0.57156	0.00030214	0.54331	0.0002872	1.1149	0.00058934	528.6140731119838	53.296	0.52772	53.286	53.03	53.558	-0.0096054					46	19	3	0	0	0	0.33346	1	12598	12598		0.50596	0	1	708720			59274	11905	34073	34074	72208	72208					0.0516411364205851
YNYLPKLKKI	10	Unmodified	_YNYLPKLKKI_					0	0	0			REV__ENSG00000117501|ENST00000367759|MROH9	REV__ENSG00000117501|ENST00000367759|MROH9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	426.9018859863281	3	427.263941	1278.76999	-0.21722	-9.281E-05	1.0298	0.00044001	0.81262	0.0003472	427.2642365726908	51.748	0.86048	51.758	51.561	52.421	0.0095673					46	31	2	0	0	0	0.3213	1	12126	12126		1.9064	0.1641	1	266040	+		59275	14973	34074	34075	72209	72209					0.14175985913379918
YNYLVNIS	8	Unmodified	_YNYLVNIS_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.2444152832031	2	493.2531	984.491647	0.27443	0.00013536	-0.95188	-0.00046952	-0.67745	-0.00033415	493.25235890838127	73.657	0.1695	73.709	73.578	73.747	0.052361					7	5	2	0	0	0	0.39068	1	18807	18807		20.454	4.6064	1	89184	+		59276	18519	34075	34076	72210	72210					-0.0012192133942789951
YNYLVNIS	8	Unmodified	_YNYLVNIS_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.2531	984.491647	0.10299	5.0799E-05	-0.15739	-7.7633E-05	-0.054403	-2.6834E-05	493.2530852705072	73.702	0.21736	73.702	73.578	73.795	0	-0.0035032	0.00063135	NaN	20.454	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113970	+		59277	18519	34075	34076							-0.0012192133942789951
YNYLVNIS	8	Unmodified	_YNYLVNIS_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	493.2531	984.491647	0.27443	0.00013536	-0.95188	-0.00046952	-0.67745	-0.00033415	493.25235890838127	73.657	0.1695	73.709	73.578	73.747	0.052361	0.0035032	-0.00015242	NaN	20.454	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89184	+		59278	18519	34075	34076							-0.0012192133942789951
YNYPCRFLN	9	Unmodified	_YNYPCRFLN_					0	0	0		ENST00000491074.5_1_2:183616895-183641856:+|nuORF	ENST00000491074.5_1_2:183616895-183641856:+|nuORF	ENST00000491074.5_1_2:183616895-183641856:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8184814453125	2	595.276583	1188.53861	0.47114	0.00028046	-3.6624	-0.0021802	-3.1913	-0.0018997	595.2743883371185	67.847	0.14558	67.847	67.732	67.878	0					5	4	2	0	0	0	0.25622	1	17057	17057		7.2892	0	1	45242			59279	11173	34076	34077	72211	72211					-0.04811385059929307
YNYSKKYIQ	9	Unmodified	_YNYSKKYIQ_					0	0	0		ENST00000357628.7_1_7:124538411-124568991:-|nuORF	ENST00000357628.7_1_7:124538411-124568991:-|nuORF	ENST00000357628.7_1_7:124538411-124568991:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.2749633789062	2	603.811313	1205.60807	0.57217	0.00034548	3.8381	0.0023175	4.4102	0.0026629	603.8129924034192	79.209	0.24292	79.18	79.128	79.371	-0.028923					11	9	2	0	0	0	0.25066	1	20505	20505		11.64	1.5664	1	58758			59280	9635	34077	34078	72212	72212					0.013493971604930266
YPAAKRVKL	9	Unmodified	_YPAAKRVKL_					0	0	0		nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC	nc|ENSG00000136997|P01106-1|MYC	nc|ENSG00000136997|P01106-1|MYC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	523.303955078125	2	523.329476	1044.6444	0.30886	0.00016164	0.054294	2.8414E-05	0.36316	0.00019005	523.3294284692752	22.579	1.2261	22.579	21.795	23.021	0					87	43	3	0	0	0	0.24688	1	3062	3062		14.838	12.536	1	427430			59281	4021	34078	34079	72213	72213					0.12386318847848088
YPAAKRVKL	9	Unmodified	_YPAAKRVKL_					0	0	0		nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC	nc|ENSG00000136997|P01106-1|MYC	nc|ENSG00000136997|P01106-1|MYC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.30419921875	2	523.329476	1044.6444	0.27406	0.00014342	0.1211	6.3374E-05	0.39516	0.0002068	523.3294279742242	22.648	1.2103	22.561	21.756	22.967	-0.087608					92	43	3	0	0	0	0.23784	1	3094	3094		19.257	12.534	1	322650			59282	4021	34078	34079	72214	72214					0.12386318847848088
YPAAKRVKL	9	Unmodified	_YPAAKRVKL_					0	0	0		nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC	nc|ENSG00000136997|P01106-1|MYC	nc|ENSG00000136997|P01106-1|MYC	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.3041381835938	2	523.329476	1044.6444	0.29481	0.00015428	0.016608	8.6915E-06	0.31142	0.00016298	523.32937085174	22.753	1.5601	22.708	21.524	23.084	-0.044867					100	55	3	0	0	0	0.23784	1	3098	3098		19.257	14.928	1	372830			59283	4021	34078	34079	72215	72215					0.12386318847848088
YPAEGPTFLI	10	Unmodified	_YPAEGPTFLI_					0	0	0		nc|ENSG00000211810|P04437|TRAV29DV5	nc|ENSG00000211810|P04437|TRAV29DV5	nc|ENSG00000211810|P04437|TRAV29DV5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.289794921875	2	554.289682	1106.56481	0.63371	0.00035126	0.41119	0.00022792	1.0449	0.00057918	554.2895631065413	77.442	1.9465	77.442	77.09	79.036	0					165	73	4	0	0	0	0.080806	1	19981	19981		52.268	29.12	1	936280			59284	12932	34079	34080	72216	72216					0.01579207383178982
YPAEGPTFLI	10	Unmodified	_YPAEGPTFLI_					0	0	0		nc|ENSG00000211810|P04437|TRAV29DV5	nc|ENSG00000211810|P04437|TRAV29DV5	nc|ENSG00000211810|P04437|TRAV29DV5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.2897338867188	2	554.289682	1106.56481	0.61845	0.0003428	0.50542	0.00028015	1.1239	0.00062295	554.289578111614	77.365	1.1885	77.42	77.035	78.223	0.055412					128	42	5	0	0	0	0.31867	1	20046	20046		18.146	6.5061	1	1014100			59285	12932	34079	34080	72217	72217					0.01579207383178982
YPAEGPTFLI	10	Unmodified	_YPAEGPTFLI_					0	0	0		nc|ENSG00000211810|P04437|TRAV29DV5	nc|ENSG00000211810|P04437|TRAV29DV5	nc|ENSG00000211810|P04437|TRAV29DV5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2900390625	2	554.289682	1106.56481	0.70113	0.00038863	0.40426	0.00022408	1.1054	0.00061271	554.2895507764598	77.452	0.99171	77.42	77.1	78.092	-0.031334					107	35	4	0	0	0	0.12843	1	19980	19980		41.84	20.093	1	1036200			59286	12932	34079	34080	72218	72218					0.01579207383178982
YPAELNNI	8	Unmodified	_YPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	467.2375183105469	2	467.23745	932.460347	0.26422	0.00012345	0.48802	0.00022802	0.75224	0.00035147	467.23740461908125	54.003	1.166	54.003	53.542	54.708	0					103	42	4	0	0	0	0.029748	3	12806	12763;12806;12853		88.904	21.56	1	2278800			59287	2082	34080	34081	72219;72220;72221	72220					-0.008584943735286288
YPAELNNI	8	Unmodified	_YPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	467.2375793457031	2	467.23745	932.460347	0.067499	3.1538E-05	0.68827	0.00032159	0.75577	0.00035313	467.2374779881367	53.931	0.94404	53.987	53.56	54.504	0.056255					103	35	4	0	0	0	0.021231	2	12769	12769;12818		100.37	33.028	1	2265100			59288	2082	34080	34081	72222;72223	72222					-0.008584943735286288
YPAELNNI	8	Unmodified	_YPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.237548828125	2	467.23745	932.460347	0.36078	0.00016857	0.26155	0.00012221	0.62233	0.00029078	467.2373154646684	54.184	0.92274	54.168	53.682	54.605	-0.015923					97	32	4	0	0	0	0.050146	1	12836	12836		78.149	13.913	1	2508900			59289	2082	34080	34081	72224	72224					-0.008584943735286288
YPAELNNI	8	Unmodified	_YPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	467.23745	932.460347	0.26422	0.00012345	0.48802	0.00022802	0.75224	0.00035147	467.23740461908125	54.003	1.166	54.003	53.542	54.708	0	-0.049484	2.1468E-05	NaN	100.37	103	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2278800			59290	2082	34080	34081							-0.008584943735286288
YPAELNNI	8	Unmodified	_YPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	467.23745	932.460347	0.067499	3.1538E-05	0.68827	0.00032159	0.75577	0.00035313	467.2374779881367	53.931	0.94404	53.987	53.56	54.504	0.056255	-0.065574	0.0002086	NaN	100.37	103	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2265100			59291	2082	34080	34081							-0.008584943735286288
YPAELNNI	8	Unmodified	_YPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	467.23745	932.460347	0.36078	0.00016857	0.26155	0.00012221	0.62233	0.00029078	467.2373154646684	54.184	0.92274	54.168	53.682	54.605	-0.015923	0.11506	-0.00019016	NaN	100.37	97	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2508900			59292	2082	34080	34081							-0.008584943735286288
YPAERKQAL	9	Unmodified	_YPAERKQAL_					0	0	0		ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7993774414062	2	538.298373	1074.58219	0.51249	0.00027587	0.7144	0.00038456	1.2269	0.00066043	538.2987516148697	20.254	0.55235	20.254	20.157	20.709	0					37	19	3	0	0	0	0.23612	1	2478	2478		18.373	1.2865	1	186110			59293	7463	34081	34082	72225	72225					0.047885477088584594
YPAERKQAL	9	Unmodified	_YPAERKQAL_					0	0	0		ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7998657226562	2	538.298373	1074.58219	0.65499	0.00035258	0.54669	0.00029428	1.2017	0.00064686	538.2988124395596	20.532	0.50274	20.422	20.277	20.779	-0.11003					28	17	3	0	0	0	0.073988	1	2566	2566		43.982	19.772	1	164670			59294	7463	34081	34082	72226	72226					0.047885477088584594
YPAERKQAL	9	Unmodified	_YPAERKQAL_					0	0	0		ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	ENSG00000184575|ENST00000332707|XPOT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2987670898438	2	538.298373	1074.58219	0.82291	0.00044297	0.3276	0.00017635	1.1505	0.00061932	538.2985356272586	20.442	0.41111	20.389	20.202	20.613	-0.05291					31	14	3	0	0	0	0.13296	1	2550	2550		33.445	9.2349	1	186880			59295	7463	34081	34082	72227	72227					0.047885477088584594
YPAGFMDVI	9	Oxidation (M)	_YPAGFM(Oxidation (M))DVI_		YPAGFM(1)DVI		YPAGFM(51)DVI	0	0	1		ENSG00000198034|ENST00000316084|RPS4X;ENSG00000129824|ENST00000250784|RPS4Y1;ENST00000373626.4_1_X:71494279-71497060:-|nuORF;ENST00000486733.2_1_X:71494866-71496063:-|nuORF;ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENSG00000198034|ENST00000316084|RPS4X;ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	514.7413940429688	2	514.741511	1027.46847	0.26152	0.00013461	-0.42554	-0.00021905	-0.16403	-8.4431E-05	514.7412823709248	67.346	1.9247	67.424	66.268	68.193	0.078041					166	68	4	0	0	0	0.055495	2	16892	16841;16892		50.855	31.875	1	1733700			59296	8028;10221	34082	34083	72228;72229	72229		877			-0.04416683448425829
YPAGFMDVI	9	Oxidation (M)	_YPAGFM(Oxidation (M))DVI_		YPAGFM(1)DVI		YPAGFM(42)DVI	0	0	1		ENSG00000198034|ENST00000316084|RPS4X;ENSG00000129824|ENST00000250784|RPS4Y1;ENST00000373626.4_1_X:71494279-71497060:-|nuORF;ENST00000486733.2_1_X:71494866-71496063:-|nuORF;ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENSG00000198034|ENST00000316084|RPS4X;ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7415161132812	2	514.741511	1027.46847	0.071625	3.6868E-05	-0.18944	-9.7515E-05	-0.11782	-6.0647E-05	514.7413641967223	67.454	1.4638	67.438	66.736	68.2	-0.016304					168	51	4	0	0	0	0.079066	1	16921	16921		42.095	20.348	1	1587100			59297	8028;10221	34082	34083	72230	72230		877			-0.04416683448425829
YPAGFMDVI	9	Oxidation (M)	_YPAGFM(Oxidation (M))DVI_					0	0	1		ENSG00000198034|ENST00000316084|RPS4X;ENSG00000129824|ENST00000250784|RPS4Y1;ENST00000373626.4_1_X:71494279-71497060:-|nuORF;ENST00000486733.2_1_X:71494866-71496063:-|nuORF;ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENSG00000198034|ENST00000316084|RPS4X;ENST00000406274.1_1_6:13521672-13522002:+|nuORF	ENSG00000198034|ENST00000316084|RPS4X	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	514.741511	1027.46847	0.30666	0.00015785	-0.59029	-0.00030385	-0.28363	-0.000146	514.741224185458	67.48	1.4069	67.48	66.744	68.15	0	0.032442	-0.00016717	NaN	50.855	163	49	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1599000			59298	8028;10221	34082	34083				877			-0.04416683448425829
YPAGVLEV	8	Unmodified	_YPAGVLEV_					0	0	0		nc|ENSG00000286175|A0A494C0N9|FAM246B;nc|ENSG00000286102|A0A494C0Y3|FAM246A	nc|ENSG00000286175|A0A494C0N9|FAM246B	nc|ENSG00000286175|A0A494C0N9|FAM246B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.23150634765625	2	424.231636	846.448719	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.969	1	59.969	59.469	60.469	0								0	0	0	0.22487	1	14636	14636		40.449	2.2974	1				59299	13003	34083	34084	72231	72231					0.01935308603140129
YPAHFGQL	8	Unmodified	_YPAHFGQL_					0	0	0		ENST00000566161.5_1_16:71808369-71823382:-|nuORF;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1	ENST00000566161.5_1_16:71808369-71823382:-|nuORF	ENST00000566161.5_1_16:71808369-71823382:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	466.2764587402344	2	466.734877	931.455202	0.1829	8.5366E-05	0.029255	1.3654E-05	0.21216	9.9021E-05	466.7346432069966	44.267	0.26303	44.336	44.174	44.437	0.068569					11	9	2	0	0	0	0.33245	1	9798	9798		13.508	1.8676	1	111490			59300	6108	34084	34085	72232	72232					-0.013267534454598717
YPAIGTPIPF	10	Unmodified	_YPAIGTPIPF_					0	0	0		ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.807861328125	2	538.294768	1074.57498	0.67484	0.00036326	-0.061135	-3.2909E-05	0.6137	0.00033035	538.2949259662125	92.196	0.394	92.197	91.978	92.372	0.00046539					42	27	2	0	0	0	0.31745	1	24530	24530		7.9102	7.9102	1	96649			59301	3110	34085	34086	72233	72233					0.040678151084193814
YPAKVTAV	8	Unmodified	_YPAKVTAV_					0	0	0		ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000025293|Q9BVI0-2|PHF20;ENST00000481202.5_1_20:34389438-34450945:+|nuORF	ENSG00000025293|ENST00000374012|PHF20	ENSG00000025293|ENST00000374012|PHF20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.887451171875	2	424.747453	847.480354	-0.027549	-1.1701E-05	0.1862	7.9086E-05	0.15865	6.7385E-05	424.74744705591394	30.275	0.53256	30.303	30.048	30.58	0.027946					29	18	2	0	0	0	0.32099	1	5546	5546		25.399	3.6527	1	165640			59302	532	34086	34087	72234	72234					0.05051301357093507
YPALLGEEKII	11	Unmodified	_YPALLGEEKII_					0	0	0			REV__ENSG00000100372|ENST00000435456|SLC25A17	REV__ENSG00000100372|ENST00000435456|SLC25A17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.9075012207031	3	415.907823	1244.70164	0.13069	5.4356E-05	0.77611	0.00032279	0.9068	0.00037714	415.90809128753983	33.668	2.2487	33.668	32.251	34.5	0					207	80	4	0	0	0	0.42346	2	6507	6507;6610		4.1166	0.79699	1	1251100	+		59303	14189	34087	34088	72235;72236	72235					0.08907696542905796
YPALLGEEKII	11	Unmodified	_YPALLGEEKII_					0	0	0			REV__ENSG00000100372|ENST00000435456|SLC25A17	REV__ENSG00000100372|ENST00000435456|SLC25A17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.907958984375	3	415.907823	1244.70164	0.49492	0.00020584	0.35178	0.00014631	0.8467	0.00035215	415.9079258741227	33.51	1.8274	33.576	32.489	34.317	0.06636					173	65	3	0	0	0	0.39234	1	6512	6512		6.6235	1.1002	1	1278500	+		59304	14189	34087	34088	72237	72237					0.08907696542905796
YPALLGEEKII	11	Unmodified	_YPALLGEEKII_					0	0	0			REV__ENSG00000100372|ENST00000435456|SLC25A17	REV__ENSG00000100372|ENST00000435456|SLC25A17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.9078063964844	3	415.907823	1244.70164	0.062388	2.5948E-05	0.8776	0.000365	0.93998	0.00039095	415.90811279282394	33.466	2.033	33.533	32.319	34.352	0.066704					193	73	4	0	0	0	0.39234	1	6463	6463		6.6235	0	1	1129000	+		59305	14189	34087	34088	72238	72238					0.08907696542905796
YPANSIVVV	9	Unmodified	_YPANSIVVV_					0	0	0		ENST00000474291.1_1_7:97911152-97911766:+|nuORF;ENST00000473967.1_1_7:97911152-97912144:+|nuORF;nc|ENSG00000164713|O95415-2|BRI3;ENST00000456357.6_1_7:97881701-97920552:+|nuORF;ENSG00000164713|ENST00000297290|BRI3	ENST00000474291.1_1_7:97911152-97911766:+|nuORF	ENST00000474291.1_1_7:97911152-97911766:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2713928222656	2	481.271293	960.528032	-0.2095	-0.00010082	-0.57656	-0.00027748	-0.78606	-0.00037831	481.2708727441124	59.999	0.57188	59.999	59.787	60.359	0					32	20	2	0	0	0	0.18803	1	14623	14623		25.399	0.72543	1	600420			59306	5869	34088	34089	72239	72239					0.04618955557282334
YPANSIVVV	9	Unmodified	_YPANSIVVV_					0	0	0		ENST00000474291.1_1_7:97911152-97911766:+|nuORF;ENST00000473967.1_1_7:97911152-97912144:+|nuORF;nc|ENSG00000164713|O95415-2|BRI3;ENST00000456357.6_1_7:97881701-97920552:+|nuORF;ENSG00000164713|ENST00000297290|BRI3	ENST00000474291.1_1_7:97911152-97911766:+|nuORF	ENST00000474291.1_1_7:97911152-97911766:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2716369628906	2	481.271293	960.528032	0.11877	5.7161E-05	-0.29856	-0.00014369	-0.17978	-8.6525E-05	481.27099578657663	59.972	0.58403	59.961	59.714	60.298	-0.011486					37	20	2	0	0	0	0.18803	1	14597	14597		25.399	0.72543	1	525340			59307	5869	34088	34089	72240	72240					0.04618955557282334
YPANSIVVV	9	Unmodified	_YPANSIVVV_					0	0	0		ENST00000474291.1_1_7:97911152-97911766:+|nuORF;ENST00000473967.1_1_7:97911152-97912144:+|nuORF;nc|ENSG00000164713|O95415-2|BRI3;ENST00000456357.6_1_7:97881701-97920552:+|nuORF;ENSG00000164713|ENST00000297290|BRI3	ENST00000474291.1_1_7:97911152-97911766:+|nuORF	ENST00000474291.1_1_7:97911152-97911766:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	481.271293	960.528032	-0.2095	-0.00010082	-0.57656	-0.00027748	-0.78606	-0.00037831	481.2708727441124	59.999	0.57188	59.999	59.787	60.359	0	0.015032	-0.000236	NaN	25.399	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	600420			59308	5869	34088	34089							0.04618955557282334
YPANSIVVV	9	Unmodified	_YPANSIVVV_					0	0	0		ENST00000474291.1_1_7:97911152-97911766:+|nuORF;ENST00000473967.1_1_7:97911152-97912144:+|nuORF;nc|ENSG00000164713|O95415-2|BRI3;ENST00000456357.6_1_7:97881701-97920552:+|nuORF;ENSG00000164713|ENST00000297290|BRI3	ENST00000474291.1_1_7:97911152-97911766:+|nuORF	ENST00000474291.1_1_7:97911152-97911766:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	481.271293	960.528032	0.11877	5.7161E-05	-0.29856	-0.00014369	-0.17978	-8.6525E-05	481.27099578657663	59.972	0.58403	59.961	59.714	60.298	-0.011486	-0.022687	3.1596E-05	NaN	25.399	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	525340			59309	5869	34088	34089							0.04618955557282334
YPAPGYAAGV	10	Unmodified	_YPAPGYAAGV_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF;ENST00000469614.1_1_7:4828357-4829561:+|nuORF;ENST00000490487.1_1_7:4829477-4830874:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2744140625	2	483.239993	964.465432	0.0032387	1.5651E-06	-2.3262	-0.0011241	-2.3229	-0.0011225	483.2384642266078	23.221	0.43588	23.221	23.077	23.513	0					29	14	3	0	0	0	0.3198	1	3383	3383		4.3292	0	1	50054			59310	8553	34089	34090	72241	72241					-0.0182219051090442
YPAPLTSI	8	Unmodified	_YPAPLTSI_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8878479003906	2	431.239461	860.46437	-0.26054	-0.00011236	0.10811	4.662E-05	-0.15244	-6.5737E-05	431.23943271764705	61.584	0.50275	61.584	61.307	61.81	0					30	18	2	0	0	0	0.21281	1	15118	15118		46.921	14.804	1	363860			59311	596	34090	34091	72242	72242					0.028555951201951757
YPAPLTSI	8	Unmodified	_YPAPLTSI_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	431.239461	860.46437	-0.36556	-0.00015764	0.052071	2.2455E-05	-0.31348	-0.00013519	431.2394133849921	61.302	0.45572	61.399	61.273	61.729	0.096985	-0.058203	-5.9701E-05	NaN	46.921	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243930			59312	596	34090	34091							0.028555951201951757
YPAPLTSI	8	Unmodified	_YPAPLTSI_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	431.239461	860.46437	-0.34284	-0.00014785	0.15601	6.7278E-05	-0.18683	-8.057E-05	431.2393844593704	61.398	0.63402	61.389	61.243	61.878	-0.0094566	-0.068487	2.9946E-05	NaN	46.921	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242150			59313	596	34090	34091							0.028555951201951757
YPAQVVSLI	9	Unmodified	_YPAQVVSLI_					0	0	0		nc|ENSG00000168237|Q8IVS8-5|GLYCTK;ENST00000489173.1_1_3:52325707-52327139:+|nuORF;nc|ENSG00000168237|Q8IVS8-4|GLYCTK;nc|ENSG00000168237|Q8IVS8-3|GLYCTK;ENSG00000168237|ENST00000436784|GLYCTK	nc|ENSG00000168237|Q8IVS8-5|GLYCTK	nc|ENSG00000168237|Q8IVS8-5|GLYCTK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.29486083984375	2	495.286943	988.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.502	1	44.577	44.077	45.077	0.075047								0	0	0	0.16757	1	9859	9859		30.637	5.2372	1				59314	6257	34091	34092	72243	72243					0.06459528591392427
YPARRGPQL	9	Unmodified	_YPARRGPQL_					0	0	0		ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40;ENST00000474025.1_1_1:31744094-31762265:-|nuORF	ENSG00000060688|ENST00000263694|SNRNP40	ENSG00000060688|ENST00000263694|SNRNP40	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	529.2996215820312	2	529.298707	1056.58286	0.36604	0.00019374	0.51	0.00026994	0.87604	0.00046369	529.3001218561121	24.067	0.90643	23.994	23.563	24.47	-0.072559					84	30	5	0	0	0	0.068501	1	3633	3633		46.021	18.392	1	299540			59315	750	34092	34093	72244	72244					0.05683387148565089
YPCHFLCL	8	Unmodified	_YPCHFLCL_					0	0	0		chrX:70610543-70613253|397|28.71|0.16|7.46|-|2|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|19	chrX:70610543-70613253|397|28.71|0.16|7.46|-|2|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|19	chrX:70610543-70613253|397|28.71|0.16|7.46|-|2|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.3161926269531	2	498.227516	994.44048	0.38536	0.000192	1.012	0.00050419	1.3973	0.00069619	498.2277768764757	70.13	0.48248	70.13	69.895	70.378	0					28	17	2	0	0	0	0.33618	1	17727	17727		17.087	1.3183	1	192010			59316	183	34093	34094	72245	72245					-0.05696284909492988
YPCHFLCL	8	Unmodified	_YPCHFLCL_					0	0	0		chrX:70610543-70613253|397|28.71|0.16|7.46|-|2|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|19	chrX:70610543-70613253|397|28.71|0.16|7.46|-|2|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|19	chrX:70610543-70613253|397|28.71|0.16|7.46|-|2|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.3161315917969	2	498.227516	994.44048	0.34965	0.00017421	0.71917	0.00035831	1.0688	0.00053251	498.22775604918564	70.107	0.50176	70.173	69.91	70.412	0.066048					31	17	3	0	0	0	0.33618	1	17710	17710		17.087	0	1	253670			59317	183	34093	34094	72246	72246					-0.05696284909492988
YPCHFLCL	8	Unmodified	_YPCHFLCL_					0	0	0		chrX:70610543-70613253|397|28.71|0.16|7.46|-|2|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|19	chrX:70610543-70613253|397|28.71|0.16|7.46|-|2|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|19	chrX:70610543-70613253|397|28.71|0.16|7.46|-|2|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.3161926269531	2	498.227516	994.44048	0.36664	0.00018267	1.0065	0.00050145	1.3731	0.00068412	498.2278486361382	70.145	0.50207	70.123	69.937	70.439	-0.022087					30	17	2	0	0	0	0.33618	1	17738	17738		17.087	7.7034	1	180840			59318	183	34093	34094	72247	72247					-0.05696284909492988
YPDDRTARTL	10	Unmodified	_YPDDRTARTL_					0	0	0		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.3063354492188	2	604.306926	1206.5993	0.13944	8.4263E-05	-0.071744	-4.3355E-05	0.067694	4.0908E-05	604.3067864335931	27.867	0.3898	27.867	27.763	28.153	0					22	13	2	0	0	0	0.38952	1	4831	4831		1.1933	0	1	113250			59319	4004	34094	34095	72248	72248					0.0042642352398161165
YPDDRTARTL	10	Unmodified	_YPDDRTARTL_					0	0	0		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.3068237304688	2	604.306926	1206.5993	0.16638	0.00010054	0.10471	6.3274E-05	0.27109	0.00016382	604.3067693893526	27.894	0.40356	27.889	27.737	28.14	-0.0042572					26	13	3	0	0	0	0.3994	1	4839	4839		0.35063	0	1	151600			59320	4004	34094	34095	72249	72249					0.0042642352398161165
YPDDRTARTL	10	Unmodified	_YPDDRTARTL_					0	0	0		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.3072509765625	2	604.306926	1206.5993	-0.084787	-5.1238E-05	0.67662	0.00040889	0.59183	0.00035765	604.3071579317108	27.853	0.36275	27.854	27.715	28.078	0.0004673					19	12	2	0	0	0	0.36862	1	4771	4771		10.151	3.4274	1	121150			59321	4004	34094	34095	72250	72250					0.0042642352398161165
YPDEQDLFD	9	Unmodified	_YPDEQDLFD_					0	0	0		nc|ENSG00000185013|Q96P26-3|NT5C1B;ENSG00000185013|ENST00000304081|NT5C1B;nc|ENSG00000185013|Q96P26-4|NT5C1B;nc|ENSG00000185013|Q96P26|NT5C1B	nc|ENSG00000185013|Q96P26-3|NT5C1B	nc|ENSG00000185013|Q96P26-3|NT5C1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2891845703125	2	571.237844	1140.46113	0.45986	0.00026269	-0.033607	-1.9197E-05	0.42626	0.00024349	571.2376889365411	66.285	0.79668	66.369	66.108	66.905	0.083832					38	28	2	0	0	0	0.25526	1	16723	16723		7.9102	0	1	324550			59322	7497	34095	34096	72251	72251					-0.10347744515138402
YPDGIRHI	8	Unmodified	_YPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2853088378906	2	485.758884	969.503215	-0.3913	-0.00019008	1.7392	0.00084485	1.3479	0.00065478	485.75955428596404	34.393	0.53124	34.393	34.193	34.725	0					27	18	2	0	0	0	0.29394	1	6805	6805		36.127	14.38	1	388740			59323	7801	34096	34097	72252	72252					0.017243204745682306
YPDKNVKF	8	Unmodified	_YPDKNVKF_					0	0	0			REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7928161621094	2	505.768917	1009.52328	0.57435	0.00029049	-0.50002	-0.00025289	0.074329	3.7593E-05	505.7687397286509	52.906	0.61022	52.958	52.659	53.269	0.052376					35	21	2	0	0	0	0.33995	1	12540	12540		15.768	5.6943	1	521880	+		59324	16534	34097	34098	72253	72253					0.018900714145274833
YPDRNLPTI	9	Unmodified	_YPDRNLPTI_					0	0	0		ENSG00000115539|ENST00000264254|PDCL3	ENSG00000115539|ENST00000264254|PDCL3	ENSG00000115539|ENST00000264254|PDCL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.31103515625	2	544.790381	1087.56621	0.73537	0.00040062	-2.6716	-0.0014555	-1.9363	-0.0010549	544.7901295253226	47.508	0.68533	47.508	47.112	47.797	0					55	24	3	0	0	0	0.23235	1	10854	10854		16.149	3.6176	1	383720			59325	2657	34098	34099	72254	72254					0.025928414719373905
YPDRNLPTI	9	Unmodified	_YPDRNLPTI_					0	0	0		ENSG00000115539|ENST00000264254|PDCL3	ENSG00000115539|ENST00000264254|PDCL3	ENSG00000115539|ENST00000264254|PDCL3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.826904296875	2	544.790381	1087.56621	1.1374	0.00061965	-4.2006	-0.0022885	-3.0632	-0.0016688	545.289101286211	47.381	0.68885	47.435	47.093	47.782	0.054375					66	25	4	0	0	0	0.13643	1	10805	10805		31.268	17.362	1	366950			59326	2657	34098	34099	72255	72255					0.025928414719373905
YPDRVPVI	8	Unmodified	_YPDRVPVI_					0	0	0		ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.77215576171875	2	479.77146	957.528367	0.22236	0.00010668	0.74284	0.0003564	0.96521	0.00046308	479.7718174261556	49.814	1.5508	49.814	49.135	50.686	0					138	56	4	0	0	0	0.021656	2	11460	11409;11460		99.799	51.453	1	3057400			59327	6441;570	34099	34100	72256;72257	72257					0.047903752771503605
YPDRVPVI	8	Unmodified	_YPDRVPVI_					0	0	0		ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	479.7721862792969	2	479.77146	957.528367	0.29367	0.00014089	0.6857	0.00032898	0.97936	0.00046987	479.7717954429729	49.776	1.3114	49.821	49.238	50.549	0.044891					141	48	4	0	0	0	0.029711	1	11453	11453		88.954	48.997	1	3095800			59328	6441;570	34099	34100	72258	72258					0.047903752771503605
YPDRVPVI	8	Unmodified	_YPDRVPVI_					0	0	0		ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP	ENSG00000170296|ENST00000302386|GABARAP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.772705078125	2	479.77146	957.528367	0.28891	0.00013861	0.65394	0.00031374	0.94285	0.00045235	479.7717367573708	49.788	1.4097	49.809	49.168	50.578	0.020691					139	51	4	0	0	0	0.056926	2	11389	11389;11403		74.929	36.955	1	3064800			59329	6441;570	34099	34100	72259;72260	72259					0.047903752771503605
YPDSHQLFV	9	Unmodified	_YPDSHQLFV_					0	0	0		ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000138757|Q9UN86-2|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	ENSG00000138757|ENST00000359707|G3BP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.2692260742188	2	553.269281	1104.52401	0.40937	0.00022649	1.047	0.00057929	1.4564	0.00080578	553.269856864781	51.336	1.5273	51.346	50.729	52.256	0.0095634					136	57	3	0	0	0	0.0054984	1	12012	12012		86.332	55.695	1	1372100			59330	4187	34100	34101	72261	72261					-0.02407133936435457
YPDSKGRLGL	10	Unmodified	_YPDSKGRLGL_					0	0	0			REV__nc|ENSG00000158220|A0FGR9-2|ESYT3	REV__nc|ENSG00000158220|A0FGR9-2|ESYT3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.3043823242188	2	553.303655	1104.59276	0.67247	0.00037208	0.35338	0.00019552	1.0258	0.0005676	553.3034932159032	55.042	0.44268	55.025	54.82	55.263	-0.017097					27	16	2	0	0	0	0.27248	1	13160	13160		23.79	1.0535	1	910720	+		59331	16805	34101	34102	72262	72262					0.044645303632933064
YPEAITRLV	9	Unmodified	_YPEAITRLV_					0	0	0		ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA;ENST00000525693.5_1_11:65421851-65422496:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3031005859375	2	531.303124	1060.5917	0.74196	0.00039421	-0.45045	-0.00023932	0.29152	0.00015488	531.3028460749018	55.809	1.9773	55.88	55.055	57.033	0.070885					176	73	4	0	0	0	0.0023895	2	13333	13333;13381		107.1	65.26	1	4913400			59332	11626	34102	34103	72263;72264	72263					0.06382315994346754
YPEAITRLV	9	Unmodified	_YPEAITRLV_					0	0	0		ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA;ENST00000525693.5_1_11:65421851-65422496:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3029174804688	2	531.303124	1060.5917	0.90948	0.00048321	-0.62912	-0.00033425	0.28036	0.00014896	531.3027881187545	56.062	1.8066	56.043	55.003	56.809	-0.019081					155	66	4	0	0	0	0.0023895	1	13401	13401		107.1	65.26	1	5635700			59333	11626	34102	34103	72265	72265					0.06382315994346754
YPEAITRLV	9	Unmodified	_YPEAITRLV_					0	0	0		ENST00000531484.5_1_11:65421851-65429483:-|nuORF;nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA;ENST00000525693.5_1_11:65421851-65422496:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	ENST00000531484.5_1_11:65421851-65429483:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	531.303124	1060.5917	0.95697	0.00050844	-0.70151	-0.00037271	0.25546	0.00013573	531.3027143306923	55.961	1.988	55.961	54.974	56.962	0	-0.00054825	-0.00014849	NaN	107.1	162	72	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4700300			59334	11626	34102	34103							0.06382315994346754
YPEKPSKG	8	Unmodified	_YPEKPSKG_					0	0	0		ENST00000464058.1_1_21:18981288-18985128:-|nuORF;BTG3|p.H186Qfs*36|1|0.24|ENSG00000154640|chr21:17594273-17594294|TGGCTTTTTTCTGGGCAAAGGG/-|frameshift_variant;ENSG00000154640|ENST00000348354|BTG3;nc|ENSG00000154640|Q14201-2|BTG3	ENST00000464058.1_1_21:18981288-18985128:-|nuORF	ENST00000464058.1_1_21:18981288-18985128:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	453.24017333984375	2	453.239993	904.465432	0.16052	7.2754E-05	-0.10472	-4.7464E-05	0.0558	2.5291E-05	453.24000163134406	21.786	1.9626	21.786	20.883	22.845	0					144	69	3	0	0	0	0.3408	1	2914	2914		14.838	0	1	138120			59335	82	34103	34104	72266	72266					0.00937809489096253
YPELVLEKA	9	Unmodified	_YPELVLEKA_					0	0	0		nc|ENSG00000248383|Q9H158-2|PCDHAC1;ENSG00000248383|ENST00000253807|PCDHAC1	nc|ENSG00000248383|Q9H158-2|PCDHAC1	nc|ENSG00000248383|Q9H158-2|PCDHAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8171997070312	2	531.297507	1060.58046	0.21093	0.00011207	-0.60605	-0.00032199	-0.39512	-0.00020992	531.2972365509039	76.33	1.3163	76.384	75.862	77.178	0.053413					120	46	4	0	0	0	0.16283	1	19559	19559		29.082	0	1	1396100			59336	8579	34104	34105	72267	72267					0.05259493900257439
YPEPRVLTL	9	Unmodified	_YPEPRVLTL_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7926635742188	2	544.310949	1086.60735	0.59011	0.0003212	-1.3666	-0.00074387	-0.77652	-0.00042267	544.3100615859389	57.424	0.78467	57.424	56.908	57.693	0					38	28	2	0	0	0	0.23749	1	13754	13754		20.415	7.883	1	400930			59337	3647	34105	34106	72268	72268					0.06750602511419856
YPEPRVLTL	9	Unmodified	_YPEPRVLTL_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7925415039062	2	544.310949	1086.60735	0.6018	0.00032757	-1.4115	-0.00076831	-0.80973	-0.00044075	544.3100676136318	57.208	0.70123	57.286	56.756	57.458	0.078671					40	25	3	0	0	0	0.21623	1	13728	13728		21.59	11.516	1	370130			59338	3647	34105	34106	72269	72269					0.06750602511419856
YPERPIIYYSV	11	Unmodified	_YPERPIIYYSV_					0	0	0		ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	467.26153564453125	3	467.246727	1398.71835	0.35238	0.00016465	-0.13918	-6.503E-05	0.2132	9.9619E-05	467.24660861901	59.345	0.37433	59.33	59.113	59.488	-0.014267					20	12	2	0	0	0	0.33287	1	14373	14373		2.8433	0.21205	1	201210			59339	5900	34106	34107	72270	72270					0.0349419742885857
YPERPIIYYSV	11	Unmodified	_YPERPIIYYSV_					0	0	0		ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	467.246727	1398.71835	-0.087144	-4.0718E-05	-0.13191	-6.1634E-05	-0.21905	-0.00010235	467.58106114205884	59.424	0.34632	59.424	59.133	59.479	0	0.090084	-0.00029343	NaN	2.8433	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172370			59340	5900	34106	34107							0.0349419742885857
YPERPIIYYSV	11	Unmodified	_YPERPIIYYSV_					0	0	0		ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	467.246727	1398.71835	0.049261	2.3017E-05	0.32982	0.00015411	0.37908	0.00017713	467.58113545519484	59.156	0.38708	59.247	59.047	59.434	0.091301	-0.086499	0.0003538	NaN	2.8433	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199840			59341	5900	34106	34107							0.0349419742885857
YPESLVRVV	9	Unmodified	_YPESLVRVV_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.3030395507812	2	531.303124	1060.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.385	1	52.385	51.885	52.885	0								0	0	0	0.055092	1	12294	12294		59.368	9.8141	1				59342	555	34107	34108	72271	72271					0.06382315994369492
YPESLVRVV	9	Unmodified	_YPESLVRVV_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.3029174804688	2	531.303124	1060.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.343	1	52.394	51.894	52.894	0.050575								0	0	0	0.055092	1	12280	12280		59.368	9.8141	1				59343	555	34107	34108	72272	72272					0.06382315994369492
YPESLVRVV	9	Unmodified	_YPESLVRVV_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.3032836914062	2	531.303124	1060.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.398	1	52.397	51.897	52.897	-0.00080872								0	0	0	0.055092	1	12290	12290		59.368	9.4354	1				59344	555	34107	34108	72273	72273					0.06382315994369492
YPESVGREV	9	Unmodified	_YPESVGREV_					0	0	0		RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;RALGAPB|p.A220Hfs*53|1|0.05|ENSG00000170471|chr20:38499550-38499551|-/CATCTTTG|frameshift_variant	RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant	RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2955322265625	2	518.258914	1034.50327	0.63736	0.00033032	-0.49709	-0.00025762	0.14027	7.2697E-05	518.2586463143734	32.511	0.71992	32.511	32.091	32.811	0					53	25	3	0	0	0	0.1558	1	6169	6169		34.932	10.911	1	276400			59345	6455	34108	34109	72274	72274					-0.01259724316082611
YPESVGREV	9	Unmodified	_YPESVGREV_					0	0	0		RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;RALGAPB|p.A220Hfs*53|1|0.05|ENSG00000170471|chr20:38499550-38499551|-/CATCTTTG|frameshift_variant	RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant	RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.29541015625	2	518.258914	1034.50327	0.60144	0.0003117	-0.24292	-0.0001259	0.35852	0.0001858	518.2586886927077	32.392	0.68912	32.448	32.097	32.786	0.055309					39	24	2	0	0	0	0.14646	1	6141	6141		43.772	43.772	1	291120			59346	6455	34108	34109	72275	72275					-0.01259724316082611
YPESVGREV	9	Unmodified	_YPESVGREV_					0	0	0		RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;RALGAPB|p.A220Hfs*53|1|0.05|ENSG00000170471|chr20:38499550-38499551|-/CATCTTTG|frameshift_variant	RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant	RALGAPB|p.S399Nfs*14|1|0.04|ENSG00000170471|chr20:38517649-38517650|-/ATGAAATTATTCTTCATAGGTCAAAATATAT|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.29541015625	2	518.258914	1034.50327	0.32615	0.00016903	0.28518	0.0001478	0.61133	0.00031683	518.2590124745709	32.421	0.66704	32.476	32.072	32.739	0.054375					48	23	3	0	0	0	0.075068	1	6169	6169		65.474	34.837	1	271880			59347	6455	34108	34109	72276	72276					-0.01259724316082611
YPETLGRLLI	10	Unmodified	_YPETLGRLLI_					0	0	0		SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant;SEC14L1|p.V620Efs*51|1|0.16|ENSG00000129657|chr17:77212192-77212193|-/TCTGAAAAAG|frameshift_variant;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8455810546875	2	587.845156	1173.67576	0.36617	0.00021525	-0.44947	-0.00026422	-0.083298	-4.8967E-05	587.8448818971227	67.901	0.60984	67.901	67.592	68.202	0					50	21	3	0	0	0	0.0082636	2	17069	17069;17082		84.522	46.347	1	663820			59348	3434	34109	34110	72277;72278	72277					0.09586847091304662
YPETLGRLLI	10	Unmodified	_YPETLGRLLI_					0	0	0		SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant;SEC14L1|p.V620Efs*51|1|0.16|ENSG00000129657|chr17:77212192-77212193|-/TCTGAAAAAG|frameshift_variant;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.8453369140625	2	587.845156	1173.67576	0.46793	0.00027507	-0.54692	-0.00032151	-0.078989	-4.6433E-05	587.8446753358252	67.761	0.45583	67.839	67.628	68.084	0.078041					41	15	3	0	0	0	0.024262	1	17040	17040		67.081	37.24	1	566130			59349	3434	34109	34110	72279	72279					0.09586847091304662
YPETLGRLLI	10	Unmodified	_YPETLGRLLI_					0	0	0		SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant;SEC14L1|p.V620Efs*51|1|0.16|ENSG00000129657|chr17:77212192-77212193|-/TCTGAAAAAG|frameshift_variant;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	SEC14L1|p.V598Kfs*16|1|0.31|ENSG00000129657|chr17:77212126-77212127|-/AA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.8450927734375	2	587.845156	1173.67576	0.34763	0.00020435	-0.66549	-0.00039121	-0.31786	-0.00018685	587.8447816448249	67.907	0.6074	67.891	67.618	68.226	-0.016296					49	20	3	0	0	0	0.0082636	2	17069	17035;17069		84.522	48.016	1	691810			59350	3434	34109	34110	72280;72281	72281					0.09586847091304662
YPEVALHF	8	Unmodified	_YPEVALHF_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.25006103515625	2	488.25036	974.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.878	1	60.975	60.475	61.475	0.096985								0	0	0	0.12828	1	14911	14911		56.541	22.439	1				59351	3034	34110	34111	72282	72282					-0.0020960013125659316
YPEVALHF	8	Unmodified	_YPEVALHF_					0	0	0		nc|ENSG00000122218|P53621-2|COPA;ENSG00000122218|ENST00000241704|COPA;COPA|p.R726Hfs*13|1|0.2|ENSG00000122218|chr1:160297423-160297430|TCCTTTCT/-|frameshift_variant	nc|ENSG00000122218|P53621-2|COPA	nc|ENSG00000122218|P53621-2|COPA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.249755859375	2	488.25036	974.486168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.036	1	61.026	60.526	61.526	-0.0094566								0	0	0	0.12828	1	14958	14958		56.541	22.354	1				59352	3034	34110	34111	72283	72283					-0.0020960013125659316
YPEYLLTF	8	Unmodified	_YPEYLLTF_					0	0	0		PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3025512695312	2	523.265676	1044.5168	0.43709	0.00022871	1.1569	0.00060536	1.594	0.00083408	523.265702409949	82.364	0.38477	82.437	82.293	82.677	0.073097					31	15	3	0	0	0	0.33993	1	21494	21494		16.942	0	1	114610			59353	13040	34111	34112	72284	72284					-0.0036786653686249338
YPEYLLTF	8	Unmodified	_YPEYLLTF_					0	0	0		PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	PARP14|p.I1797L|1|0.31|ENSG00000173193|chr3:122728580-122728580|A/C|missense_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	523.265676	1044.5168	0.56069	0.00029339	0.025051	1.3108E-05	0.58574	0.0003065	523.2655652051013	82.522	0.34843	82.502	82.346	82.694	-0.020584	0.016672	-0.00020619	NaN	16.942	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124300			59354	13040	34111	34112							-0.0036786653686249338
YPFAHPAI	8	Unmodified	_YPFAHPAI_					0	0	0		nc|ENSG00000176994|Q8TEV9-2|SMCR8;ENSG00000176994|ENST00000406438|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	458.5931701660156	2	458.239796	914.465038	0.27824	0.0001275	-0.14634	-6.706E-05	0.1319	6.0443E-05	458.2395772033814	48.24	0.7536	48.24	48.044	48.798	0					40	26	2	0	0	0	0.29242	1	11109	11109		32.454	27.698	1	282690			59355	6956	34112	34113	72285	72285					0.004384345598850814
YPFAHPAI	8	Unmodified	_YPFAHPAI_					0	0	0		nc|ENSG00000176994|Q8TEV9-2|SMCR8;ENSG00000176994|ENST00000406438|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	458.5931701660156	2	458.239796	914.465038	0.50002	0.00022913	0.22114	0.00010134	0.72116	0.00033047	458.2396888915741	48.384	0.61723	48.432	48.075	48.693	0.047523					38	22	2	0	0	0	0.26384	1	11042	11042		32.454	16.606	1	256510			59356	6956	34112	34113	72286	72286					0.004384345598850814
YPFAHPAI	8	Unmodified	_YPFAHPAI_					0	0	0		nc|ENSG00000176994|Q8TEV9-2|SMCR8;ENSG00000176994|ENST00000406438|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.5932312011719	2	458.239796	914.465038	0.38123	0.0001747	0.0034494	1.5807E-06	0.38468	0.00017628	458.23963430837574	48.336	0.68429	48.379	48.011	48.695	0.04332					43	25	2	0	0	0	0.26384	1	11007	11007		41.817	29.286	1	239360			59357	6956	34112	34113	72287	72287					0.004384345598850814
YPFANKESI	9	Unmodified	_YPFANKESI_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7719116210938	2	534.771657	1067.52876	0.44795	0.00023955	0.32473	0.00017366	0.77268	0.00041321	534.7717419903307	44.052	1.8374	44.052	42.902	44.739	0					154	67	4	0	0	0	0.00078391	2	9553	9553;9600		125.53	64.172	1	2554300			59358	4716	34113	34114	72288;72289	72288					-0.0023024979368528875
YPFANKESI	9	Unmodified	_YPFANKESI_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7721557617188	2	534.771657	1067.52876	0.43496	0.0002326	0.50274	0.00026885	0.93769	0.00050145	534.7718067747332	43.112	0.73495	43.191	42.749	43.484	0.07877					67	26	3	0	0	0	0.00078391	2	9457	9457;9514		125.53	66.85	1	1182200			59359	4716	34113	34114	72290;72291	72290					-0.0023024979368528875
YPFANKESI	9	Unmodified	_YPFANKESI_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7721557617188	2	534.771657	1067.52876	0.32979	0.00017636	0.28556	0.00015271	0.61534	0.00032907	534.7717063482113	43.036	0.94241	43.128	42.499	43.442	0.091362					72	31	3	0	0	0	0.0016712	1	9407	9407		114.2	70.343	1	1151700			59360	4716	34113	34114	72292	72292					-0.0023024979368528875
YPFANKESI	9	Unmodified	_YPFANKESI_					0	0	0		nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	nc|ENSG00000146463|Q5VZL5-2|ZMYM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7718505859375	2	534.771657	1067.52876	0.50511	0.00027012	0.27932	0.00014937	0.78443	0.00041949	534.7717019937096	43.774	1.2366	43.858	43.19	44.427	0.083996					113	45	4	0	0	0	0.014206	1	9504	9504		72.968	31.128	1	3087800			59361	4716	34113	34114	72293	72293					-0.0023024979368528875
YPFAQHFS	8	Unmodified	_YPFAQHFS_					0	0	0		nc|ENSG00000158578|P22557-3|ALAS2;nc|ENSG00000158578|P22557-2|ALAS2;nc|ENSG00000158578|P22557-4|ALAS2;ENSG00000158578|ENST00000650242|ALAS2	nc|ENSG00000158578|P22557-3|ALAS2	nc|ENSG00000158578|P22557-3|ALAS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	499.3057861328125	2	498.732335	995.450116	0.46053	0.00022968	-0.59892	-0.0002987	-0.13839	-6.9018E-05	498.7319994261508	39.041	0.49859	39.141	38.953	39.452	0.099407					27	17	2	0	0	0	0.32435	1	8178	8178		23.148	2.2772	1	190660			59362	5362	34114	34115	72294	72294					-0.047790573080988
YPFDSPQV	8	Unmodified	_YPFDSPQV_					0	0	0		ENSG00000104343|ENST00000602593|UBE2W;nc|ENSG00000104343|Q96B02-2|UBE2W;nc|ENSG00000104343|Q96B02-3|UBE2W	ENSG00000104343|ENST00000602593|UBE2W	ENSG00000104343|ENST00000602593|UBE2W	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.7243347167969	2	476.724175	951.433798	0.24763	0.00011805	0.23287	0.00011101	0.4805	0.00022907	476.72417936943697	56.777	1.0532	56.777	56.471	57.525	0					105	38	4	0	0	0	0.079438	2	13627	13627;13678		64.236	3.8468	1	2386900			59363	1883	34115	34116	72295;72296	72295					-0.04386183264853116
YPFDSPQV	8	Unmodified	_YPFDSPQV_					0	0	0		ENSG00000104343|ENST00000602593|UBE2W;nc|ENSG00000104343|Q96B02-2|UBE2W;nc|ENSG00000104343|Q96B02-3|UBE2W	ENSG00000104343|ENST00000602593|UBE2W	ENSG00000104343|ENST00000602593|UBE2W	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.72430419921875	2	476.724175	951.433798	0.41694	0.00019877	0.043156	2.0573E-05	0.4601	0.00021934	476.72408535020253	56.69	0.92822	56.769	56.437	57.365	0.078671					108	34	4	0	0	0	0.079438	1	13595	13595		64.236	3.8468	1	2671600			59364	1883	34115	34116	72297	72297					-0.04386183264853116
YPFDSPQV	8	Unmodified	_YPFDSPQV_					0	0	0		ENSG00000104343|ENST00000602593|UBE2W;nc|ENSG00000104343|Q96B02-2|UBE2W;nc|ENSG00000104343|Q96B02-3|UBE2W	ENSG00000104343|ENST00000602593|UBE2W	ENSG00000104343|ENST00000602593|UBE2W	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.7242736816406	2	476.724175	951.433798	0.58788	0.00028026	-0.067677	-3.2263E-05	0.52021	0.00024799	476.7240167097694	56.878	0.98071	56.859	56.541	57.522	-0.019077					102	35	4	0	0	0	0.18275	1	13650	13650		46.021	11.919	1	2455400			59365	1883	34115	34116	72298	72298					-0.04386183264853116
YPFEPPQI	8	Unmodified	_YPFEPPQI_					0	0	0		ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7498779296875	2	495.750193	989.485833	0.26052	0.00012915	-0.36358	-0.00018024	-0.10306	-5.109E-05	495.7498818661113	69.577	1.4285	69.577	68.812	70.24	0					111	51	3	0	0	0	0.42642	1	17580	17580		13.906	1.3745	1	600410			59366	1080	34116	34117	72299	72299					-0.00933019851095196
YPFEPPQI	8	Unmodified	_YPFEPPQI_					0	0	0		ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7497863769531	2	495.750193	989.485833	0.29216	0.00014484	-0.41257	-0.00020453	-0.1204	-5.9689E-05	495.74993306725503	69.64	1.3676	69.706	68.875	70.242	0.06604					108	48	3	0	0	0	0.37937	1	17616	17616		21.747	3.6003	1	631670			59367	1080	34116	34117	72300	72300					-0.00933019851095196
YPFEPPQI	8	Unmodified	_YPFEPPQI_					0	0	0		ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	ENST00000487227.5_1_1:202302298-202304891:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.7498779296875	2	495.750193	989.485833	0.27841	0.00013802	-0.35266	-0.00017483	-0.074252	-3.681E-05	495.74991568601126	69.673	1.2757	69.65	68.972	70.248	-0.022087					118	45	4	0	0	0	0.29634	1	17579	17579		34.102	16.99	1	641450			59368	1080	34116	34117	72301	72301					-0.00933019851095196
YPFFRGVTI	9	Unmodified	_YPFFRGVTI_					0	0	0		ENST00000467016.1_1_10:12238244-12240776:+|nuORF;ENSG00000151465|ENST00000281141|CDC123	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3008422851562	2	550.300384	1098.58622	0.36267	0.00019958	0.25615	0.00014096	0.61882	0.00034054	550.3012178520403	67.357	1.5327	67.357	66.717	68.25	0					127	54	4	0	0	0	0.0016361	4	16874	16781;16830;16874;16917		114.65	66.9	1	21394000			59369	4962	34117	34118	72302;72303;72304;72305	72304					0.04086637202590282
YPFFRGVTI	9	Unmodified	_YPFFRGVTI_					0	0	0		ENST00000467016.1_1_10:12238244-12240776:+|nuORF;ENSG00000151465|ENST00000281141|CDC123	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3002319335938	2	550.300384	1098.58622	0.43956	0.00024189	-0.89336	-0.00049162	-0.4538	-0.00024973	550.2995749657719	72.842	1.2609	72.842	72.534	73.795	0					93	45	3	0	0	0	0.18208	2	18577	18577;18626		26.268	4.7312	1	414840			59370	4962	34117	34118	72306;72307	72306					0.04086637202590282
YPFFRGVTI	9	Unmodified	_YPFFRGVTI_					0	0	0		ENST00000467016.1_1_10:12238244-12240776:+|nuORF;ENSG00000151465|ENST00000281141|CDC123	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.301025390625	2	550.300384	1098.58622	0.40948	0.00022534	0.1919	0.0001056	0.60138	0.00033094	550.3012502861814	67.202	1.5728	67.28	66.704	68.277	0.078041					124	55	4	0	0	0	0.0016361	4	16830	16743;16787;16830;16873		114.65	66.9	1	23557000			59371	4962	34117	34118	72308;72309;72310;72311	72310					0.04086637202590282
YPFFRGVTI	9	Unmodified	_YPFFRGVTI_					0	0	0		ENST00000467016.1_1_10:12238244-12240776:+|nuORF;ENSG00000151465|ENST00000281141|CDC123	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.30029296875	2	550.300384	1098.58622	0.4534	0.00024951	-1.2005	-0.00066065	-0.74713	-0.00041115	550.2994453680142	72.826	1.0351	72.88	72.57	73.606	0.053833					80	37	3	0	0	0	0.18208	1	18564	18564		26.268	0	1	422400			59372	4962	34117	34118	72312	72312					0.04086637202590282
YPFFRGVTI	9	Unmodified	_YPFFRGVTI_					0	0	0		ENST00000467016.1_1_10:12238244-12240776:+|nuORF;ENSG00000151465|ENST00000281141|CDC123	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3005981445312	2	550.300384	1098.58622	0.26816	0.00014757	0.56068	0.00030854	0.82884	0.00045611	550.3013588788573	67.324	1.551	67.307	66.736	68.287	-0.016296					118	54	4	0	0	0	0.0016361	2	16834	16834;16879		114.65	66.9	1	27176000			59373	4962	34117	34118	72313;72314	72313					0.04086637202590282
YPFFRGVTI	9	Unmodified	_YPFFRGVTI_					0	0	0		ENST00000467016.1_1_10:12238244-12240776:+|nuORF;ENSG00000151465|ENST00000281141|CDC123	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.3009643554688	2	550.300384	1098.58622	0.54464	0.00029972	-1.2015	-0.00066119	-0.65686	-0.00036147	550.2991747737204	72.92	1.3148	72.89	72.455	73.77	-0.029305					91	47	3	0	0	0	0.18208	2	18575	18575;18624		26.268	0	1	506100			59374	4962	34117	34118	72315;72316	72315					0.04086637202590282
YPFFRGVTI	9	Unmodified	_YPFFRGVTI_					0	0	0		ENST00000467016.1_1_10:12238244-12240776:+|nuORF;ENSG00000151465|ENST00000281141|CDC123	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	550.300384	1098.58622	0.43956	0.00024189	-0.89336	-0.00049162	-0.4538	-0.00024973	550.2995749657719	72.842	1.2609	72.842	72.534	73.795	0	-0.028851	0.00019668	NaN	26.268	93	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414840			59375	4962	34117	34118							0.04086637202590282
YPFFRGVTI	9	Unmodified	_YPFFRGVTI_					0	0	0		ENST00000467016.1_1_10:12238244-12240776:+|nuORF;ENSG00000151465|ENST00000281141|CDC123	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	ENST00000467016.1_1_10:12238244-12240776:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	550.300384	1098.58622	0.4534	0.00024951	-1.2005	-0.00066065	-0.74713	-0.00041115	550.2994453680142	72.826	1.0351	72.88	72.57	73.606	0.053833	0.0091222	-0.0001414	NaN	26.268	80	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422400			59376	4962	34117	34118							0.04086637202590282
YPFGLESRV	9	Unmodified	_YPFGLESRV_					0	0	0		nc|ENSG00000132840|Q9H2M3-2|BHMT2;ENSG00000132840|ENST00000255192|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2799682617188	2	534.279649	1066.54475	0.64795	0.00034619	0.24145	0.000129	0.8894	0.00047519	534.2797532895264	53.651	1.179	53.651	52.767	53.946	0					85	43	2	0	0	0	0.0037449	5	12601	12553;12601;12651;12700;12741		96.367	52.508	1	4421300			59377	3669	34118	34119	72317;72318;72319;72320;72321	72318					0.014134564432424668
YPFGLESRV	9	Unmodified	_YPFGLESRV_					0	0	0		nc|ENSG00000132840|Q9H2M3-2|BHMT2;ENSG00000132840|ENST00000255192|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2799072265625	2	534.279649	1066.54475	0.30281	0.00016179	0.28076	0.00015	0.58357	0.00031179	534.2799542592459	53.507	1.1233	53.563	52.8	53.923	0.056255					151	41	5	0	0	0	0.0037449	6	12636	12488;12541;12588;12636;12685;12719		96.367	52.508	1	4715300			59378	3669	34118	34119	72322;72323;72324;72325;72326;72327	72325					0.014134564432424668
YPFGLESRV	9	Unmodified	_YPFGLESRV_					0	0	0		nc|ENSG00000132840|Q9H2M3-2|BHMT2;ENSG00000132840|ENST00000255192|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	nc|ENSG00000132840|Q9H2M3-2|BHMT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.2798461914062	2	534.279649	1066.54475	0.57089	0.00030501	0.19836	0.00010598	0.76925	0.000411	534.2800982391127	53.855	1.4168	53.845	52.787	54.204	-0.0096054					172	52	5	0	0	0	0.0037449	6	12746	12554;12602;12698;12746;12783;12831		96.367	44.098	1	4472300			59379	3669	34118	34119	72328;72329;72330;72331;72332;72333	72331					0.014134564432424668
YPFHKQPPTYV	11	Unmodified	_YPFHKQPPTYV_					0	0	0		nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF	nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-3|LMF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	459.571533203125	3	459.571434	1375.69247	-0.30068	-0.00013818	0.44251	0.00020336	0.14183	6.5181E-05	459.57153855900685	38.792	1.3004	38.792	38.295	39.595	0					137	46	4	0	0	0	0.042306	3	8113	8065;8113;8163		55.467	46.491	1	2001000			59380	1554	34119	34120	72334;72335;72336	72335					0.0196534797721597
YPFHKQPPTYV	11	Unmodified	_YPFHKQPPTYV_					0	0	0		nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF	nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-3|LMF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.5714416503906	3	459.571434	1375.69247	0.077595	3.5661E-05	0.070901	3.2584E-05	0.1485	6.8245E-05	459.5713648713688	38.708	1.2864	38.798	38.347	39.633	0.090885					129	46	5	0	0	0	0.058973	3	8098	8048;8098;8147		50.648	41.896	1	2151800			59381	1554	34119	34120	72337;72338;72339	72338					0.0196534797721597
YPFHKQPPTYV	11	Unmodified	_YPFHKQPPTYV_					0	0	0		nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF	nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-3|LMF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	459.57147216796875	3	459.571434	1375.69247	0.31819	0.00014623	-0.21874	-0.00010053	0.099451	4.5705E-05	459.5712658672474	38.7	1.0426	38.798	38.408	39.45	0.09779					126	37	6	0	0	0	0.048078	3	8082	8035;8082;8130		53.798	41.57	1	2264800			59382	1554	34119	34120	72340;72341;72342	72341					0.0196534797721597
YPFHVPLL	8	Unmodified	_YPFHVPLL_					0	0	0		ENSG00000226979|ENST00000418386|LTA	ENSG00000226979|ENST00000418386|LTA	ENSG00000226979|ENST00000418386|LTA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.2537536621094	2	493.278921	984.543289	0.41294	0.00020369	-1.125	-0.00055495	-0.71208	-0.00035126	493.27841118216884	71.205	0.76626	71.205	70.873	71.639	0					40	26	2	0	0	0	0.21989	1	18074	18074		52.334	23.253	1	551820			59383	8454	34120	34121	72343	72343					0.050398671451375776
YPFHVPLL	8	Unmodified	_YPFHVPLL_					0	0	0		ENSG00000226979|ENST00000418386|LTA	ENSG00000226979|ENST00000418386|LTA	ENSG00000226979|ENST00000418386|LTA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.25335693359375	2	493.278921	984.543289	0.3772	0.00018606	-0.67287	-0.00033191	-0.29568	-0.00014585	493.27866398895367	71.127	0.66209	71.187	70.855	71.517	0.060783					42	23	2	0	0	0	0.26384	1	18095	18095		24.21	0	1	612120			59384	8454	34120	34121	72344	72344					0.050398671451375776
YPFHVPLL	8	Unmodified	_YPFHVPLL_					0	0	0		ENSG00000226979|ENST00000418386|LTA	ENSG00000226979|ENST00000418386|LTA	ENSG00000226979|ENST00000418386|LTA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.2535095214844	2	493.278921	984.543289	0.44456	0.00021929	-0.66405	-0.00032756	-0.21949	-0.00010827	493.2785949405168	71.199	0.71588	71.175	70.856	71.572	-0.024872					39	25	2	0	0	0	0.21989	1	18084	18084		32.454	9.7174	1	598880			59385	8454	34120	34121	72345	72345					0.050398671451375776
YPFINSRII	9	Unmodified	_YPFINSRII_					0	0	0		nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000502932.1_1_5:6604245-6604729:-|nuORF;ENST00000513888.5_1_5:6600041-6604993:-|nuORF;nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.7955322265625	2	561.818941	1121.62333	0.39211	0.00022029	-1.0426	-0.00058574	-0.65046	-0.00036544	561.8181459238067	63.63	1.0405	63.63	63.117	64.158	0					57	37	2	0	0	0	0.20381	1	15861	15861		29.841	6.6922	1	192160			59386	585	34121	34122	72346	72346					0.06738308748322197
YPFINSRII	9	Unmodified	_YPFINSRII_					0	0	0		nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000502932.1_1_5:6604245-6604729:-|nuORF;ENST00000513888.5_1_5:6600041-6604993:-|nuORF;nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.7739868164062	2	561.818941	1121.62333	0.42237	0.0002373	-0.50261	-0.00028237	-0.080236	-4.5078E-05	561.8187832348326	63.712	1.2702	63.703	62.832	64.102	-0.0085564					66	45	3	0	0	0	0.20381	1	15790	15790		29.841	6.6922	1	278480			59387	585	34121	34122	72347	72347					0.06738308748322197
YPFINSRII	9	Unmodified	_YPFINSRII_					0	0	0		nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2;ENST00000502932.1_1_5:6604245-6604729:-|nuORF;ENST00000513888.5_1_5:6600041-6604993:-|nuORF;nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	nc|ENSG00000037474|Q08J23-2|NSUN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	561.818941	1121.62333	0.46959	0.00026383	-0.88533	-0.0004974	-0.41574	-0.00023357	561.8184752666837	63.568	1.109	63.664	62.88	63.989	0.095722	-0.0020768	-2.8655E-05	NaN	29.841	63	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237300			59388	585	34121	34122							0.06738308748322197
YPFKPPKI	8	Unmodified	_YPFKPPKI_					0	0	0		UBE2D1|p.P113Sfs*8|1|0.01|ENSG00000072401|chr10:58367954-58367955|-/AG|frameshift_variant;nc|ENSG00000185651|P68036-2|UBE2L3;ENSG00000072401|ENST00000373910|UBE2D1;ENSG00000185651|ENST00000342192|UBE2L3;ENST00000496722.1_1_22:21922618-21975955:+|nuORF;nc|ENSG00000185651|P68036-3|UBE2L3	UBE2D1|p.P113Sfs*8|1|0.01|ENSG00000072401|chr10:58367954-58367955|-/AG|frameshift_variant	UBE2D1|p.P113Sfs*8|1|0.01|ENSG00000072401|chr10:58367954-58367955|-/AG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.2947692871094	2	495.294571	988.574589	0.48912	0.00024226	-0.066932	-3.3151E-05	0.42219	0.00020911	495.29450993501234	44.371	3.0154	44.371	42.624	45.64	0					269	110	4	0	0	0	0.026838	3	9874	9822;9874;9915		92.822	81.613	1	8510100			59389	980	34122	34123	72348;72349;72350	72349					0.07984440179222929
YPFKPPKI	8	Unmodified	_YPFKPPKI_					0	0	0		UBE2D1|p.P113Sfs*8|1|0.01|ENSG00000072401|chr10:58367954-58367955|-/AG|frameshift_variant;nc|ENSG00000185651|P68036-2|UBE2L3;ENSG00000072401|ENST00000373910|UBE2D1;ENSG00000185651|ENST00000342192|UBE2L3;ENST00000496722.1_1_22:21922618-21975955:+|nuORF;nc|ENSG00000185651|P68036-3|UBE2L3	UBE2D1|p.P113Sfs*8|1|0.01|ENSG00000072401|chr10:58367954-58367955|-/AG|frameshift_variant	UBE2D1|p.P113Sfs*8|1|0.01|ENSG00000072401|chr10:58367954-58367955|-/AG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.294677734375	2	495.294571	988.574589	0.49322	0.00024429	-0.1176	-5.8245E-05	0.37563	0.00018605	495.29448733284613	44.078	3.5271	44.155	42.027	45.554	0.077515					306	128	4	0	0	0	0.042854	3	9789	9624;9789;9839		81.613	81.613	1	7810200			59390	980	34122	34123	72351;72352;72353	72352					0.07984440179222929
YPFKPPKI	8	Unmodified	_YPFKPPKI_					0	0	0		UBE2D1|p.P113Sfs*8|1|0.01|ENSG00000072401|chr10:58367954-58367955|-/AG|frameshift_variant;nc|ENSG00000185651|P68036-2|UBE2L3;ENSG00000072401|ENST00000373910|UBE2D1;ENSG00000185651|ENST00000342192|UBE2L3;ENST00000496722.1_1_22:21922618-21975955:+|nuORF;nc|ENSG00000185651|P68036-3|UBE2L3	UBE2D1|p.P113Sfs*8|1|0.01|ENSG00000072401|chr10:58367954-58367955|-/AG|frameshift_variant	UBE2D1|p.P113Sfs*8|1|0.01|ENSG00000072401|chr10:58367954-58367955|-/AG|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	495.2947998046875	2	495.294571	988.574589	0.3693	0.00018291	-0.048603	-2.4073E-05	0.3207	0.00015884	495.2945275532773	44.071	3.5544	44.155	42.059	45.614	0.083992					312	130	4	0	0	0	0.042854	4	9691	9605;9691;9768;9817		81.613	81.613	1	8688200			59391	980	34122	34123	72354;72355;72356;72357	72355					0.07984440179222929
YPFKPPKV	8	Unmodified	_YPFKPPKV_					0	0	0		ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000182247|ENST00000396703|UBE2E2;ENSG00000170035|ENST00000410062|UBE2E3;ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000511691.1_1_5:138980019-139003047:+|nuORF;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000411687.1_1_X:14262689-14263010:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.2872314453125	2	488.286746	974.558939	0.028266	1.3802E-05	-0.052604	-2.5686E-05	-0.024338	-1.1884E-05	488.28706610400974	39.748	4.107	39.748	37.397	41.504	0					562	148	5	0	0	0	0.0030373	15	8338	7848;7860;7876;8106;8153;8193;8290;8338;8379;8427;8470;8511;8556;8596;8642		131.3	95.254	1	30416000			59392	6418;11213;1123	34123	34124	72358;72359;72360;72361;72362;72363;72364;72365;72366;72367;72368;72369;72370;72371;72372	72365					0.07064153662179251
YPFKPPKV	8	Unmodified	_YPFKPPKV_					0	0	0		ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000182247|ENST00000396703|UBE2E2;ENSG00000170035|ENST00000410062|UBE2E3;ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000511691.1_1_5:138980019-139003047:+|nuORF;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000411687.1_1_X:14262689-14263010:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2871398925781	2	488.286746	974.558939	0.25319	0.00012363	-0.29392	-0.00014352	-0.04073	-1.9888E-05	488.28696887676523	39.512	4.1237	39.605	37.417	41.541	0.09267					517	150	5	0	0	0	0.0030373	12	8357	7798;7849;8081;8127;8170;8263;8307;8357;8400;8443;8497;8546		131.3	95.254	1	37737000			59393	6418;11213;1123	34123	34124	72373;72374;72375;72376;72377;72378;72379;72380;72381;72382;72383;72384	72380					0.07064153662179251
YPFKPPKV	8	Unmodified	_YPFKPPKV_					0	0	0		ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000182247|ENST00000396703|UBE2E2;ENSG00000170035|ENST00000410062|UBE2E3;ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000511691.1_1_5:138980019-139003047:+|nuORF;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000411687.1_1_X:14262689-14263010:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.28521728515625	2	488.286746	974.558939	0.35357	0.00017264	-1.9611	-0.00095758	-1.6075	-0.00078494	488.2858979772692	41.929	0.85597	42.019	41.853	42.709	0.090248					44	30	2	0	0	0	0.32038	1	9092	9092		28.487	6.7402	1	275030			59394	6418;11213;1123	34123	34124	72385	72385					0.07064153662179251
YPFKPPKV	8	Unmodified	_YPFKPPKV_					0	0	0		ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000182247|ENST00000396703|UBE2E2;ENSG00000170035|ENST00000410062|UBE2E3;ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000511691.1_1_5:138980019-139003047:+|nuORF;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000411687.1_1_X:14262689-14263010:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2873229980469	2	488.286746	974.558939	0.34559	0.00016875	-0.37269	-0.00018198	-0.027097	-1.3231E-05	488.2869304258391	39.51	4.0551	39.61	37.369	41.425	0.099407					532	147	5	0	0	0	0.0030373	12	8291	7805;7814;8056;8104;8150;8242;8291;8334;8378;8426;8468;8514		131.3	95.254	1	39480000			59395	6418;11213;1123	34123	34124	72386;72387;72388;72389;72390;72391;72392;72393;72394;72395;72396;72397	72392					0.07064153662179251
YPFKPPKV	8	Unmodified	_YPFKPPKV_					0	0	0		ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000182247|ENST00000396703|UBE2E2;ENSG00000170035|ENST00000410062|UBE2E3;ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000511691.1_1_5:138980019-139003047:+|nuORF;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000411687.1_1_X:14262689-14263010:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	488.286746	974.558939	0.29472	0.00014391	-1.3805	-0.0006741	-1.0858	-0.00053019	488.28595756067875	41.884	1.7988	41.981	41.79	43.588	0.096622	-0.019218	0.0002728	NaN	28.487	91	64	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	588970			59396	6418;11213;1123	34123	34124							0.07064153662179251
YPFKPPKVAF	10	Unmodified	_YPFKPPKVAF_					0	0	0		ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3	ENST00000511691.1_1_5:138980019-139003047:+|nuORF	ENST00000511691.1_1_5:138980019-139003047:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.339599609375	2	597.33951	1192.66447	0.70913	0.00042359	0.0029276	1.7487E-06	0.71206	0.00042534	597.3394089135393	54.025	1.3164	54.025	53.286	54.602	0					140	48	4	0	0	0	0.022405	2	12764	12718;12764		69.105	35.002	1	2016400			59397	1123	34124	34125	72398;72399	72399					0.07584069787799308
YPFKPPKVAF	10	Unmodified	_YPFKPPKVAF_					0	0	0		ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3	ENST00000511691.1_1_5:138980019-139003047:+|nuORF	ENST00000511691.1_1_5:138980019-139003047:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.3396606445312	2	597.33951	1192.66447	0.50737	0.00030307	0.032274	1.9278E-05	0.53964	0.00032235	597.3394593498155	53.939	1.2833	53.995	53.221	54.504	0.056255					122	48	4	0	0	0	0.033744	2	12695	12695;12740		62.573	38.552	1	1737800			59398	1123	34124	34125	72400;72401	72400					0.07584069787799308
YPFKPPKVAF	10	Unmodified	_YPFKPPKVAF_					0	0	0		ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3	ENST00000511691.1_1_5:138980019-139003047:+|nuORF	ENST00000511691.1_1_5:138980019-139003047:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.3397827148438	2	597.33951	1192.66447	0.55806	0.00033335	0.095904	5.7287E-05	0.65397	0.00039064	597.3394621362977	54.24	1.4974	54.224	53.298	54.796	-0.015923					113	54	3	0	0	0	0.013578	2	12849	12800;12849		78.728	43.796	1	1950400			59399	1123	34124	34125	72402;72403	72403					0.07584069787799308
YPFKPPKVRN	10	Unmodified	_YPFKPPKVRN_					0	0	0		ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000495141.5_1_3:23848730-23929256:+|nuORF	ENST00000495141.5_1_3:23848730-23929256:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.90777587890625	3	415.908269	1244.70298	0.062388	2.5948E-05	-0.19428	-8.0802E-05	-0.13189	-5.4855E-05	415.90811279282394	33.466	2.033	33.533	32.319	34.352	0.066704					193	73	4	0	0	0	0.37297	1	6512	6512		8.4443	4.3277	1	1129000			59400	11213	34125	34126	72404	72404					0.09041375422316378
YPFKPPKVTF	10	Unmodified	_YPFKPPKVTF_					0	0	0		ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000182247|ENST00000396703|UBE2E2;ENSG00000170035|ENST00000410062|UBE2E3	ENST00000411687.1_1_X:14262689-14263010:+|nuORF	ENST00000411687.1_1_X:14262689-14263010:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.5654296875	3	408.56562	1222.67503	0.21307	8.7051E-05	-0.44289	-0.00018095	-0.22982	-9.3897E-05	408.56539812080877	54.347	1.2969	54.347	53.595	54.891	0					114	47	3	0	0	0	0.10726	2	12903	12903;12973		46.475	32.257	1	913340			59401	6418	34126	34127	72405;72406	72405					0.07260052442211418
YPFKPPKVTF	10	Unmodified	_YPFKPPKVTF_					0	0	0		ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000182247|ENST00000396703|UBE2E2;ENSG00000170035|ENST00000410062|UBE2E3	ENST00000411687.1_1_X:14262689-14263010:+|nuORF	ENST00000411687.1_1_X:14262689-14263010:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	408.5654602050781	3	408.56562	1222.67503	0.24122	9.8554E-05	-0.41774	-0.00017067	-0.17652	-7.2119E-05	408.56537297993543	54.357	1.2982	54.421	53.592	54.89	0.063202					125	48	3	0	0	0	0.032393	2	12922	12858;12922		62.869	44.147	1	985640			59402	6418	34126	34127	72407;72408	72408					0.07260052442211418
YPFKPPKVTF	10	Unmodified	_YPFKPPKVTF_					0	0	0		ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000182247|ENST00000396703|UBE2E2;ENSG00000170035|ENST00000410062|UBE2E3	ENST00000411687.1_1_X:14262689-14263010:+|nuORF	ENST00000411687.1_1_X:14262689-14263010:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	408.5655212402344	3	408.56562	1222.67503	0.2958	0.00012085	-0.47664	-0.00019474	-0.18084	-7.3886E-05	408.5653546403415	54.686	1.1706	54.67	53.809	54.98	-0.015923					109	41	3	0	0	0	0.10726	3	12979	12930;12979;13028		46.475	36.16	1	1330700			59403	6418	34126	34127	72409;72410;72411	72410					0.07260052442211418
YPFKPPMI	8	Oxidation (M)	_YPFKPPM(Oxidation (M))I_		YPFKPPM(1)I		YPFKPPM(82)I	0	0	1		ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.7650146484375	2	504.764789	1007.51502	0.56547	0.00028543	-0.11631	-5.8709E-05	0.44916	0.00022672	504.7646700164687	55	2.3929	55	53.542	55.935	0					238	87	4	0	0	0	0.042326	5	13162	13019;13066;13114;13162;13210		81.864	51.639	1	4586800			59404	5244	34127	34128	72412;72413;72414;72415;72416	72415		638			0.011568011735334949
YPFKPPMI	8	Oxidation (M)	_YPFKPPM(Oxidation (M))I_		YPFKPPM(1)I		YPFKPPM(86)I	0	0	1		ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.7650146484375	2	504.764789	1007.51502	0.57667	0.00029108	-0.1393	-7.0312E-05	0.43737	0.00022077	504.7646408757065	54.871	2.2551	54.935	53.696	55.951	0.063202					200	84	3	0	0	0	0.033363	7	13046	12950;12996;13046;13093;13135;13186;13244		86.121	53.816	1	5117300			59405	5244	34127	34128	72417;72418;72419;72420;72421;72422;72423	72419		638			0.011568011735334949
YPFKPPMI	8	Oxidation (M)	_YPFKPPM(Oxidation (M))I_		YPFKPPM(1)I		YPFKPPM(82)I	0	0	1		ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	ENSG00000156587|ENST00000287156|UBE2L6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7649230957031	2	504.764789	1007.51502	0.54259	0.00027388	-0.019998	-1.0095E-05	0.52259	0.00026379	504.7647031607809	55.069	2.7124	55.05	53.447	56.159	-0.019077					205	99	3	0	0	0	0.042326	7	13043	12995;13043;13092;13140;13190;13232;13285		81.864	81.864	1	4794800			59406	5244	34127	34128	72424;72425;72426;72427;72428;72429;72430	72425		638			0.011568011735334949
YPFKSPSI	8	Unmodified	_YPFKSPSI_					0	0	0		ENST00000486283.1_1_7:129497270-129520783:-|nuORF;nc|ENSG00000186591|P62256-2|UBE2H;ENSG00000186591|ENST00000355621|UBE2H	ENST00000486283.1_1_7:129497270-129520783:-|nuORF	ENST00000486283.1_1_7:129497270-129520783:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.7527160644531	2	469.752736	937.490919	0.34778	0.00016337	0.0040517	1.9033E-06	0.35183	0.00016527	469.75259483309117	47.305	1.091	47.305	46.732	47.823	0					97	38	3	0	0	0	0.027083	4	10721	10671;10721;10772;10827		92.491	35.02	1	3313300			59407	7629	34128	34129	72431;72432;72433;72434	72432					0.019672840115276813
YPFKSPSI	8	Unmodified	_YPFKSPSI_					0	0	0		ENST00000486283.1_1_7:129497270-129520783:-|nuORF;nc|ENSG00000186591|P62256-2|UBE2H;ENSG00000186591|ENST00000355621|UBE2H	ENST00000486283.1_1_7:129497270-129520783:-|nuORF	ENST00000486283.1_1_7:129497270-129520783:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.7527770996094	2	469.752736	937.490919	0.13245	6.2221E-05	0.74232	0.00034871	0.87477	0.00041093	469.75271085839586	47.194	1.1792	47.246	46.629	47.808	0.052574					145	43	4	0	0	0	0.013309	5	10700	10606;10654;10700;10750;10795		111.29	53.816	1	3490400			59408	7629	34128	34129	72435;72436;72437;72438;72439	72437					0.019672840115276813
YPFKSPSI	8	Unmodified	_YPFKSPSI_					0	0	0		ENST00000486283.1_1_7:129497270-129520783:-|nuORF;nc|ENSG00000186591|P62256-2|UBE2H;ENSG00000186591|ENST00000355621|UBE2H	ENST00000486283.1_1_7:129497270-129520783:-|nuORF	ENST00000486283.1_1_7:129497270-129520783:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.7529602050781	2	469.752736	937.490919	0.79068	0.00037142	0.0093408	4.3878E-06	0.80002	0.00037581	469.75239841597875	47.193	1.073	47.247	46.709	47.782	0.054371					122	38	4	0	0	0	0.018723	4	10698	10594;10644;10698;10745		103.75	46.277	1	3766800			59409	7629	34128	34129	72440;72441;72442;72443	72442					0.019672840115276813
YPFNPPKV	8	Unmodified	_YPFNPPKV_					0	0	0		ENSG00000078140|ENST00000261427|UBE2K;nc|ENSG00000078140|P61086-3|UBE2K	ENSG00000078140|ENST00000261427|UBE2K	ENSG00000078140|ENST00000261427|UBE2K	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	481.2608947753906	2	481.260728	960.506903	0.31114	0.00014974	0.15258	7.3433E-05	0.46373	0.00022317	481.26095382617495	49.422	1.0699	49.422	48.883	49.953	0					83	38	3	0	0	0	0.24743	1	11347	11347		42.095	15.753	1	508690			59410	1104	34129	34130	72444	72444					0.025069902484233353
YPFNPPKV	8	Unmodified	_YPFNPPKV_					0	0	0		ENSG00000078140|ENST00000261427|UBE2K;nc|ENSG00000078140|P61086-3|UBE2K	ENSG00000078140|ENST00000261427|UBE2K	ENSG00000078140|ENST00000261427|UBE2K	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2612609863281	2	481.260728	960.506903	0.21262	0.00010232	0.32326	0.00015557	0.53588	0.0002579	481.2609410123767	49.533	0.86071	49.578	49.016	49.877	0.044891					65	31	3	0	0	0	0.026838	1	11365	11365		92.822	58.635	1	494700			59411	1104	34129	34130	72445	72445					0.025069902484233353
YPFNPPKV	8	Unmodified	_YPFNPPKV_					0	0	0		ENSG00000078140|ENST00000261427|UBE2K;nc|ENSG00000078140|P61086-3|UBE2K	ENSG00000078140|ENST00000261427|UBE2K	ENSG00000078140|ENST00000261427|UBE2K	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	481.2607421875	2	481.260728	960.506903	0.16299	7.844E-05	0.46132	0.00022202	0.62431	0.00030046	481.2609883181218	49.404	1.0482	49.436	48.929	49.977	0.032043					74	37	3	0	0	0	0.042854	1	11337	11337		81.613	55.272	1	470790			59412	1104	34129	34130	72446	72446					0.025069902484233353
YPFPVPPLL	9	Unmodified	_YPFPVPPLL_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.80224609375	2	521.802229	1041.5899	0.28244	0.00014738	-0.056188	-2.9319E-05	0.22625	0.00011806	521.8021302331299	94.604	0.91462	94.604	94.21	95.125	0					199	82	3	0	0	0	0.11229	1	25240	25240		36.466	36.466	1	487630			59413	3143	34130	34131	72447	72447					0.07077306976430009
YPFPVPPLL	9	Unmodified	_YPFPVPPLL_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.9854125976562	2	521.802229	1041.5899	0.32381	0.00016896	-0.39479	-0.000206	-0.07098	-3.7038E-05	521.8021302418404	94.464	0.87639	94.547	94.213	95.089	0.082779					217	73	4	0	0	0	0.15605	1	25165	25165		36.466	24.225	1	709750			59414	3143	34130	34131	72448	72448					0.07077306976430009
YPFPVPPLL	9	Unmodified	_YPFPVPPLL_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.8024291992188	2	521.802229	1041.5899	0.50426	0.00026313	-0.40612	-0.00021192	0.09814	5.121E-05	521.8020463962348	94.542	0.82647	94.54	94.247	95.073	-0.0020142					212	71	4	0	0	0	0.11279	1	25234	25234		45.75	31.168	1	814870			59415	3143	34130	34131	72449	72449					0.07077306976430009
YPFPVPPLL	9	Unmodified	_YPFPVPPLL_					0	0	0		ENSG00000124214|ENST00000371856|STAU1;nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1	ENSG00000124214|ENST00000371856|STAU1	ENSG00000124214|ENST00000371856|STAU1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.985595703125	2	521.802229	1041.5899	0.47998	0.00025045	0.11874	6.196E-05	0.59872	0.00031241	521.8023287358185	95.131	0.13741	95.129	95.073	95.211	-0.0020142					18	12	2	0	0	0	0.24542	1	25390	25390		14.582	6.4262	1	52539			59416	3143	34130	34131	72450	72450					0.07077306976430009
YPFTLRVV	8	Unmodified	_YPFTLRVV_					0	0	0		ENSG00000170832|ENST00000300896|USP32;nc|ENSG00000129204|P35125-2|USP6;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;ENSG00000129204|ENST00000574788|USP6	ENSG00000170832|ENST00000300896|USP32;ENSG00000129204|ENST00000574788|USP6	ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7897033691406	2	497.789653	993.564752	0.34877	0.00017362	-0.077186	-3.8422E-05	0.27159	0.00013519	497.78949428255515	62.042	1.1528	62.042	61.623	62.776	0					122	42	4	0	0	0	0.0011774	3	15258	15258;15312;15363		141.83	105.78	1	2884900			59417	6482;3415	34131	34132	72451;72452;72453	72451					0.06771252173859921
YPFTLRVV	8	Unmodified	_YPFTLRVV_					0	0	0		ENSG00000170832|ENST00000300896|USP32;nc|ENSG00000129204|P35125-2|USP6;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;ENSG00000129204|ENST00000574788|USP6	ENSG00000170832|ENST00000300896|USP32;ENSG00000129204|ENST00000574788|USP6	ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7896728515625	2	497.789653	993.564752	0.078179	3.8917E-05	0.22003	0.00010953	0.29821	0.00014844	497.7896430058158	61.93	1.1229	62.027	61.615	62.738	0.096985					112	40	4	0	0	0	0.0070655	3	15217	15217;15266;15319		123.45	94.964	1	2917500			59418	6482;3415	34131	34132	72454;72455;72456	72454					0.06771252173859921
YPFTLRVV	8	Unmodified	_YPFTLRVV_					0	0	0		ENSG00000170832|ENST00000300896|USP32;nc|ENSG00000129204|P35125-2|USP6;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;ENSG00000129204|ENST00000574788|USP6	ENSG00000170832|ENST00000300896|USP32;ENSG00000129204|ENST00000574788|USP6	ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7897644042969	2	497.789653	993.564752	0.19812	9.8622E-05	0.098572	4.9068E-05	0.29669	0.00014769	497.7895916265353	62.013	1.2024	62.004	61.528	62.731	-0.0085526					118	43	4	0	0	0	0.011048	3	15240	15240;15292;15343		115.69	87.205	1	3298500			59419	6482;3415	34131	34132	72457;72458;72459	72457					0.06771252173859921
YPFVQPTH	8	Unmodified	_YPFVQPTH_					0	0	0		RFTN1|p.H83Y|1|0.19|ENSG00000131378|chr3:16433936-16433936|G/A|missense_variant	RFTN1|p.H83Y|1|0.19|ENSG00000131378|chr3:16433936-16433936|G/A|missense_variant	RFTN1|p.H83Y|1|0.19|ENSG00000131378|chr3:16433936-16433936|G/A|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	494.7691650390625	2	494.747985	987.481417	0.31875	0.0001577	-3.1728	-0.0015697	-2.854	-0.001412	494.7456910926474	23.236	0.16826	23.191	23.109	23.277	-0.044867					6	5	2	0	0	0	0.34297	1	3387	3387		6.3541	0	1	16939			59420	23368	34132	34133	72460	72460					-0.01282484274008766
YPFVVLNI	8	Unmodified	_YPFVVLNI_					0	0	0		ENSG00000122512|ENST00000265849|PMS2;ENST00000486256.5_1_7:6774947-6777299:+|nuORF;nc|ENSG00000122512|P54278-3|PMS2	ENSG00000122512|ENST00000265849|PMS2	ENSG00000122512|ENST00000265849|PMS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.7622985839844	2	482.778754	963.542954	0.30087	0.00014525	-0.22635	-0.00010928	0.074521	3.5977E-05	482.7785299440576	87.133	0.80241	87.22	86.84	87.643	0.08709					56	34	2	0	0	0	0.4397	1	23051	23051		9.3474	0	1	281780			59421	3047	34133	34134	72461	72461					0.059724474252675464
YPFWGALIG	9	Unmodified	_YPFWGALIG_					0	0	0		nc|ENSG00000166928|Q96JA4-2|MS4A14	nc|ENSG00000166928|Q96JA4-2|MS4A14	nc|ENSG00000166928|Q96JA4-2|MS4A14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2557983398438	2	512.268553	1022.52255	0.26314	0.0001348	2.5233	0.0012926	2.7865	0.0014274	512.7691090381571	41.342	0.2145	41.438	41.233	41.448	0.096626					12	7	2	0	0	0	0.2616	1	8892	8892		14.582	3.4672	1	627760			59422	12821	34134	34135	72462	72462					0.012192767654710224
YPFWPGFLPQ	10	Unmodified	_YPFWPGFLPQ_					0	0	0		ENST00000447869.5_1_11:8496459-8496576:-|nuORF	ENST00000447869.5_1_11:8496459-8496576:-|nuORF	ENST00000447869.5_1_11:8496459-8496576:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	418.200439453125	3	417.878087	1250.61243	-0.11124	-4.6486E-05	-3.611	-0.001509	-3.7222	-0.0015554	417.8765459390478	27.052	0.34122	27.052	26.925	27.266	0					17	11	2	0	0	0	0.39536	1	4586	4586		2.086	0	1	50438			59423	10608	34135	34136	72463	72463					-0.0028509362596196297
YPGHGPVIH	9	Unmodified	_YPGHGPVIH_					0	0	0		ENST00000522558.1_1_8:71553109-71556351:-|nuORF;ENSG00000147592|ENST00000276590|LACTB2	ENST00000522558.1_1_8:71553109-71556351:-|nuORF	ENST00000522558.1_1_8:71553109-71556351:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.295166015625	2	488.753601	975.49265	0.72598	0.00035482	-1.7197	-0.00084049	-0.99368	-0.00048566	488.75280498636295	60.827	0.34613	60.817	60.516	60.862	-0.0094566					18	12	2	0	0	0	0.24542	1	14846	14846		14.582	4.5078	1	178130			59424	4774	34136	34137	72464	72464					0.0039233782013070595
YPGMILQI	8	Oxidation (M)	_YPGM(Oxidation (M))ILQI_		YPGM(1)ILQI		YPGM(43)ILQI	0	0	1		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7543640136719	2	475.754421	949.494289	0.28608	0.0001361	0.29342	0.0001396	0.5795	0.0002757	475.75429819963495	68.045	1.1386	68.123	67.802	68.94	0.078041					77	41	3	0	0	0	0.20019	1	17075	17075		42.968	6.9238	1	2420200			59425	307	34137	34138	72465	72465		24			0.017522107939043963
YPGMQNERH	9	Unmodified	_YPGMQNERH_					0	0	0		ENSG00000171316|ENST00000423902|CHD7;CHD7|p.K696Efs*25|1|0.07|ENSG00000171316|chr8:60781418-60781419|-/TGAGTTCCTATTTAGTTCTTGGTTATCTA|frameshift_variant;nc|ENSG00000171316|Q9P2D1-4|CHD7;nc|ENSG00000171316|Q9P2D1-2|CHD7;nc|ENSG00000171316|Q9P2D1-3|CHD7	ENSG00000171316|ENST00000423902|CHD7	ENSG00000171316|ENST00000423902|CHD7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.25390625	2	566.25364	1130.49273	0.59648	0.00033776	0.20465	0.00011588	0.80113	0.00045364	566.2537618255382	45.226	0.62168	45.294	45.034	45.656	0.068569					57	21	4	0	0	0	0.30623	1	10131	10131		7.9102	0	1	670380			59426	6536	34138	34139	72466	72466					-0.06730030242147222
YPGWNMEKQ	9	Unmodified	_YPGWNMEKQ_					0	0	0		TRHDE|p.F993Sfs*26|1|0.04|ENSG00000072657|chr12:72663096-72663096|T/-|frameshift_variant;ENSG00000072657|ENST00000261180|TRHDE	TRHDE|p.F993Sfs*26|1|0.04|ENSG00000072657|chr12:72663096-72663096|T/-|frameshift_variant	TRHDE|p.F993Sfs*26|1|0.04|ENSG00000072657|chr12:72663096-72663096|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.287109375	2	576.760766	1151.50698	0.027298	1.5745E-05	0.13494	7.7828E-05	0.16224	9.3572E-05	576.7606975862324	28.094	0.39558	28.09	27.851	28.247	-0.0042572					20	13	2	0	0	0	0.25202	1	4805	4805		10.824	0	1	102100			59427	986	34139	34140	72467	72467					-0.06271377813891377
YPHDPPKV	8	Unmodified	_YPHDPPKV_					0	0	0		ENST00000599829.1_1_19:59068052-59068363:-|nuORF;ENST00000593801.1_1_19:59068052-59068513:-|nuORF;ENSG00000130725|ENST00000253023|UBE2M	ENST00000599829.1_1_19:59068052-59068363:-|nuORF	ENST00000599829.1_1_19:59068052-59068363:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	476.74786376953125	2	476.747985	951.481417	0.024553	1.1706E-05	0.43388	0.00020685	0.45843	0.00021856	476.74812708997615	26.335	1.025	26.335	25.846	26.871	0					73	35	3	0	0	0	0.44734	1	4355	4355		6.7232	1.4925	1	124540			59428	3505	34140	34141	72468	72468					0.0037351572600528016
YPHDPPKV	8	Unmodified	_YPHDPPKV_					0	0	0		ENST00000599829.1_1_19:59068052-59068363:-|nuORF;ENST00000593801.1_1_19:59068052-59068513:-|nuORF;ENSG00000130725|ENST00000253023|UBE2M	ENST00000599829.1_1_19:59068052-59068363:-|nuORF	ENST00000599829.1_1_19:59068052-59068363:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	476.7478332519531	2	476.747985	951.481417	0.3325	0.00015852	0.33944	0.00016182	0.67194	0.00032034	476.7480938259676	26.456	0.94822	26.434	25.97	26.918	-0.022236					64	33	3	0	0	0	0.42642	1	4380	4380		13.906	3.8321	1	161760			59429	3505	34140	34141	72469	72469					0.0037351572600528016
YPHDPPKV	8	Unmodified	_YPHDPPKV_					0	0	0		ENST00000599829.1_1_19:59068052-59068363:-|nuORF;ENST00000593801.1_1_19:59068052-59068513:-|nuORF;ENSG00000130725|ENST00000253023|UBE2M	ENST00000599829.1_1_19:59068052-59068363:-|nuORF	ENST00000599829.1_1_19:59068052-59068363:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	476.747985	951.481417	0.024553	1.1706E-05	0.43388	0.00020685	0.45843	0.00021856	476.74812708997615	26.335	1.025	26.335	25.846	26.871	0	-0.021271	-2.8574E-05	NaN	13.906	73	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124540			59430	3505	34140	34141							0.0037351572600528016
YPHDPPKV	8	Unmodified	_YPHDPPKV_					0	0	0		ENST00000599829.1_1_19:59068052-59068363:-|nuORF;ENST00000593801.1_1_19:59068052-59068513:-|nuORF;ENSG00000130725|ENST00000253023|UBE2M	ENST00000599829.1_1_19:59068052-59068363:-|nuORF	ENST00000599829.1_1_19:59068052-59068363:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	476.747985	951.481417	0.115	5.4826E-05	0.63162	0.00030112	0.74662	0.00035595	476.74815429733604	26.338	0.92793	26.3	25.843	26.771	-0.03867	-0.056513	0.00015997	NaN	13.906	67	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138410			59431	3505	34140	34141							0.0037351572600528016
YPHEVPQI	8	Unmodified	_YPHEVPQI_					0	0	0		ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF	ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.7532958984375	2	491.753267	981.491981	0.3934	0.00019346	0.048658	2.3928E-05	0.44206	0.00021739	491.75314504003444	44.304	1.1076	44.304	43.576	44.684	0					80	40	3	0	0	0	0.11736	1	9811	9811		57.471	6.6163	1	748960			59432	5686	34141	34142	72470	72470					0.0004949838042875854
YPHEVPQI	8	Unmodified	_YPHEVPQI_					0	0	0		ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF	ENSG00000163481|ENST00000295704|RNF25	ENSG00000163481|ENST00000295704|RNF25	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	491.753267	981.491981	0.34009	0.00016724	0.15575	7.6593E-05	0.49584	0.00024383	491.75330289900387	43.981	1.2694	44.065	43.241	44.511	0.083992	-0.11653	3.1678E-05	NaN	57.471	81	46	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	793010			59433	5686	34141	34142							0.0004949838042875854
YPHITFSTV	9	Unmodified	_YPHITFSTV_					0	0	0		nc|ENSG00000145743|Q9UF56-3|FBXL17;ENSG00000145743|ENST00000542267|FBXL17	nc|ENSG00000145743|Q9UF56-3|FBXL17	nc|ENSG00000145743|Q9UF56-3|FBXL17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7980346679688	2	532.7742	1063.53385	0.70568	0.00037597	-0.58346	-0.00031085	0.12222	6.5115E-05	532.7737688778764	56.558	0.53163	56.558	56.267	56.799	0					30	19	2	0	0	0	0.1854	1	13585	13585		25.399	9.2502	1	402050			59434	4672	34142	34143	72471	72471					0.004620540689529662
YPHITFSTV	9	Unmodified	_YPHITFSTV_					0	0	0		nc|ENSG00000145743|Q9UF56-3|FBXL17;ENSG00000145743|ENST00000542267|FBXL17	nc|ENSG00000145743|Q9UF56-3|FBXL17	nc|ENSG00000145743|Q9UF56-3|FBXL17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	532.7984008789062	2	532.7742	1063.53385	0.74888	0.00039898	0.062872	3.3497E-05	0.81175	0.00043248	532.7741367748298	56.373	0.58167	56.452	56.221	56.802	0.078671					29	21	2	0	0	0	0.1524	1	13543	13543		39.957	17.221	1	571990			59435	4672	34142	34143	72472	72472					0.004620540689529662
YPHITFSTV	9	Unmodified	_YPHITFSTV_					0	0	0		nc|ENSG00000145743|Q9UF56-3|FBXL17;ENSG00000145743|ENST00000542267|FBXL17	nc|ENSG00000145743|Q9UF56-3|FBXL17	nc|ENSG00000145743|Q9UF56-3|FBXL17	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	532.7984008789062	2	532.7742	1063.53385	1.1236	0.00059865	-1.1832	-0.00063037	-0.059549	-3.1726E-05	532.7737291372976	56.688	0.40943	56.669	56.456	56.865	-0.019081					22	14	2	0	0	0	0.090484	1	13605	13605		54.774	25.692	1	403400			59436	4672	34142	34143	72473	72473					0.004620540689529662
YPHLHNAEL	9	Unmodified	_YPHLHNAEL_					0	0	0		ENSG00000125398|ENST00000245479|SOX9;ENST00000566034.1_1_16:1032135-1032345:+|nuORF;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000005513|ENST00000293894|SOX8;nc|ENSG00000100146|P56693|SOX10;ENSG00000100146|ENST00000396884|SOX10	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.7850341796875	2	547.274898	1092.53524	-1.0504	-0.00057485	-0.75377	-0.00041252	-1.8042	-0.00098737	547.2747076358769	34.813	0.49254	34.889	34.631	35.123	0.075306					23	17	2	0	0	0	0.24688	1	6970	6970		14.838	2.3067	1	189650			59437	3203	34143	34144	72474	72474					-0.007323118423073538
YPHLVAGAL	9	Unmodified	_YPHLVAGAL_					0	0	0		ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.76629638671875	2	470.766178	939.517802	0.074971	3.5294E-05	-0.11512	-5.4193E-05	-0.040145	-1.8899E-05	470.7661510129286	52.37	0.71441	52.37	51.941	52.656	0					42	25	2	0	0	0	0.16905	1	12320	12320		28.173	7.302	1	771990			59438	6954	34144	34145	72475	72475					0.04562392622710831
YPHLVAGAL	9	Unmodified	_YPHLVAGAL_					0	0	0		ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	470.7661437988281	2	470.766178	939.517802	0.1725	8.1208E-05	0.03231	1.521E-05	0.20481	9.6418E-05	470.766210162152	52.29	0.73518	52.341	51.788	52.523	0.050571					43	26	2	0	0	0	0.22431	1	12313	12313		20.871	6.2895	1	629760			59439	6954	34144	34145	72476	72476					0.04562392622710831
YPHLVAGAL	9	Unmodified	_YPHLVAGAL_					0	0	0		ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	470.766178	939.517802	0.069783	3.2851E-05	-0.0025446	-1.1979E-06	0.067238	3.1653E-05	470.76621117584386	52.397	0.76043	52.396	51.902	52.663	-0.00080872	0.027117	9.6855E-06	NaN	28.173	41	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	677250			59440	6954	34144	34145							0.04562392622710831
YPICINCFHR	10	Unmodified	_YPICINCFHR_					0	0	0			REV__ENST00000476943.1_1_13:49956911-49975339:-|nuORF	REV__ENST00000476943.1_1_13:49956911-49975339:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	422.2677001953125	3	422.535449	1264.58452	0.15038	6.3543E-05	-3.9768	-0.0016803	-3.8264	-0.0016168	422.5339512815296	29.436	0.33643	29.436	29.244	29.58	0					32	11	4	0	0	0	0.32068	1	5267	5267		3.5871	0.85186	1	103900	+		59441	21431	34145	34146	72477	72477					-0.03719063149355861
YPICINCFHR	10	Unmodified	_YPICINCFHR_					0	0	0			REV__ENST00000476943.1_1_13:49956911-49975339:-|nuORF	REV__ENST00000476943.1_1_13:49956911-49975339:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	422.535449	1264.58452	0.0022196	9.3784E-07	-1.2257	-0.00051791	-1.2235	-0.00051697	422.53391269389095	29.294	0.4634	29.307	29.19	29.654	0.012266	-0.11216	0.00093513	NaN	3.5871	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71425	+		59442	21431	34145	34146							-0.03719063149355861
YPICINCFHR	10	Unmodified	_YPICINCFHR_					0	0	0			REV__ENST00000476943.1_1_13:49956911-49975339:-|nuORF	REV__ENST00000476943.1_1_13:49956911-49975339:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	422.535449	1264.58452	-0.17516	-7.4012E-05	-1.7454	-0.00073749	-1.9205	-0.0008115	422.5341793874592	29.5	0.32398	29.514	29.329	29.653	0.013474	0.095058	0.00027641	NaN	3.5871	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71306	+		59443	21431	34145	34146							-0.03719063149355861
YPIEHGIIT	9	Unmodified	_YPIEHGIIT_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.7821044921875	2	521.782025	1041.5495	0.51761	0.00027008	-0.18088	-9.4378E-05	0.33674	0.0001757	521.7820437716575	42.137	0.65193	42.228	41.929	42.581	0.091362					39	22	3	0	0	0	0.14076	1	9143	9143		32.305	5.4218	1	374220			59444	2147	34146	34147	72478	72478					0.030383405859993218
YPIEHGIIT	9	Unmodified	_YPIEHGIIT_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	521.782025	1041.5495	0.14422	7.5251E-05	0.091551	4.777E-05	0.23577	0.00012302	521.7818179028285	42.404	0.45512	42.404	42.251	42.706	0	0.0729	0.00063944	NaN	32.305	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420890			59445	2147	34146	34147							0.030383405859993218
YPIEHGIIT	9	Unmodified	_YPIEHGIIT_					0	0	0		ENSG00000163017|ENST00000345517|ACTG2;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000107796|ENST00000224784|ACTA2;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF	ENSG00000163017|ENST00000345517|ACTG2	ENSG00000163017|ENST00000345517|ACTG2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	521.782025	1041.5495	0.43538	0.00022718	-0.72412	-0.00037783	-0.28873	-0.00015066	521.7816876569323	42.275	0.47201	42.36	42.093	42.565	0.085197	0.029547	-0.00021176	NaN	32.305	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	541020			59446	2147	34146	34147							0.030383405859993218
YPIEIDPHRTV	11	Unmodified	_YPIEIDPHRTV_					0	0	0		ENST00000393910.5_1_17:39983688-39992209:-|nuORF;ENST00000469698.5_1_17:39981777-39991902:-|nuORF;nc|ENSG00000141698|Q969T7-2|NT5C3B;ENSG00000141698|ENST00000435506|NT5C3B	ENST00000393910.5_1_17:39983688-39992209:-|nuORF	ENST00000393910.5_1_17:39983688-39992209:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.57275390625	3	447.238343	1338.6932	0.4759	0.00021284	-0.62127	-0.00027786	-0.14537	-6.5016E-05	447.2379429344967	45.502	0.51428	45.502	45.206	45.72	0					50	18	3	0	0	0	0.3871	1	10176	10176		12.929	8.8121	1	632910			59447	4406	34147	34148	72479	72479					0.03740142626247689
YPIEIDPHRTV	11	Unmodified	_YPIEIDPHRTV_					0	0	0		ENST00000393910.5_1_17:39983688-39992209:-|nuORF;ENST00000469698.5_1_17:39981777-39991902:-|nuORF;nc|ENSG00000141698|Q969T7-2|NT5C3B;ENSG00000141698|ENST00000435506|NT5C3B	ENST00000393910.5_1_17:39983688-39992209:-|nuORF	ENST00000393910.5_1_17:39983688-39992209:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.23822021484375	3	447.238343	1338.6932	0.42702	0.00019098	-0.12575	-5.624E-05	0.30127	0.00013474	447.2379795248647	45.309	0.7655	45.369	44.998	45.763	0.059834					81	26	5	0	0	0	0.3305	1	10119	10119		9.5301	8.5165	1	657990			59448	4406	34147	34148	72480	72480					0.03740142626247689
YPIEIDPHRTV	11	Unmodified	_YPIEIDPHRTV_					0	0	0		ENST00000393910.5_1_17:39983688-39992209:-|nuORF;ENST00000469698.5_1_17:39981777-39991902:-|nuORF;nc|ENSG00000141698|Q969T7-2|NT5C3B;ENSG00000141698|ENST00000435506|NT5C3B	ENST00000393910.5_1_17:39983688-39992209:-|nuORF	ENST00000393910.5_1_17:39983688-39992209:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	447.23822021484375	3	447.238343	1338.6932	0.35838	0.00016028	0.1505	6.7311E-05	0.50888	0.00022759	447.2380483143179	45.375	0.58353	45.44	45.119	45.703	0.065052					66	21	5	0	0	0	0.36266	1	10142	10142		16.137	10.269	1	747800			59449	4406	34147	34148	72481	72481					0.03740142626247689
YPIEPSGVL	9	Unmodified	_YPIEPSGVL_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.7629089355469	2	487.7633	973.512048	0.30292	0.00014775	-0.78179	-0.00038133	-0.47887	-0.00023357	487.7627164072386	63.197	0.62685	63.197	62.93	63.557	0					58	22	3	0	0	0	0.088391	2	15632	15632;15669		39.957	18.211	1	958200			59450	2439	34148	34149	72482;72483	72482					0.024232493203840022
YPIEPSGVL	9	Unmodified	_YPIEPSGVL_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7632751464844	2	487.7633	973.512048	0.35682	0.00017404	-0.44541	-0.00021725	-0.088588	-4.321E-05	487.76278158721914	63.111	0.68366	63.207	62.88	63.564	0.095722					64	24	4	0	0	0	0.12846	2	15586	15586;15637		34.102	15.967	1	764200			59451	2439	34148	34149	72484;72485	72484					0.024232493203840022
YPIEPSGVL	9	Unmodified	_YPIEPSGVL_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7630920410156	2	487.7633	973.512048	0.31847	0.00015534	-0.6668	-0.00032524	-0.34833	-0.0001699	487.76272210973286	63.166	0.79876	63.158	62.86	63.659	-0.0085564					64	28	4	0	0	0	0.079066	3	15620	15620;15671;15678		42.095	13.608	1	774790			59452	2439	34148	34149	72486;72487;72488	72486					0.024232493203840022
YPIFSRFPS	9	Unmodified	_YPIFSRFPS_					0	0	0			REV__ENST00000520067.5_1_5:172384285-172385778:-|nuORF	REV__ENST00000520067.5_1_5:172384285-172385778:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2266845703125	2	557.290017	1112.56548	0.1282	7.1443E-05	1.4424	0.00080383	1.5706	0.00087527	557.7923054600736	76.411	0.27419	76.464	76.345	76.619	0.053413					14	9	2	0	0	0	0.2451	1	19699	19699		15.847	2.3393	1	79427	+		59453	21880	34149	34150	72489	72489					0.013700468229217222
YPIFSRFPS	9	Unmodified	_YPIFSRFPS_					0	0	0			REV__ENST00000520067.5_1_5:172384285-172385778:-|nuORF	REV__ENST00000520067.5_1_5:172384285-172385778:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2271118164062	2	557.290017	1112.56548	0.38594	0.00021508	0.91398	0.00050935	1.2999	0.00072443	558.2928177575292	76.583	0.17629	76.551	76.422	76.599	-0.031487					9	5	3	0	0	0	0.2451	1	19730	19730		15.847	2.8047	1	94379	+		59454	21880	34149	34150	72490	72490					0.013700468229217222
YPIFSRFPS	9	Unmodified	_YPIFSRFPS_					0	0	0			REV__ENST00000520067.5_1_5:172384285-172385778:-|nuORF	REV__ENST00000520067.5_1_5:172384285-172385778:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	557.290017	1112.56548	0.078466	4.3728E-05	5.0609	0.0028204	5.1394	0.0028641	557.2934558861897	76.086	0.26189	76.086	75.932	76.193	0	-0.28102	0.0033302	NaN	15.847	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109030	+		59455	21880	34149	34150							0.013700468229217222
YPIGIPLNAF	10	Unmodified	_YPIGIPLNAF_					0	0	0			REV__ENSG00000143753|ENST00000323699|DEGS1	REV__ENSG00000143753|ENST00000323699|DEGS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.271240234375	2	552.808042	1103.60153	0.60612	0.00033507	-0.029464	-1.6288E-05	0.57665	0.00031878	552.8080450707191	77.316	0.73586	77.316	77.06	77.796	0					50	26	3	0	0	0	0.31482	1	19890	19890		11.64	11.64	1	319000	+		59456	16197	34150	34151	72491	72491					0.05387503999736509
YPINNEPRHIL	11	Unmodified	_YPINNEPRHIL_					0	0	0			REV__ENSG00000198796|ENST00000361673|ALPK2	REV__ENSG00000198796|ENST00000361673|ALPK2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.90582275390625	3	455.913971	1364.72008	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.141	1	39.241	38.741	39.741	0.099407								0	0	0	0.37347	1	8221	8221		3.0723	0	1		+		59457	18864	34151	34152	72492	72492					0.05231251237478318
YPIPAIRWL	9	Unmodified	_YPIPAIRWL_					0	0	0		nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	nc|ENSG00000177103|Q8TD84-2|DSCAML1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.8324584960938	2	564.831852	1127.64915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.585	1	12.585	12.085	13.085	0								0	0	0	0.26704	1	170	170		0.6015	0	1				59458	6961	34152	34153	72493	72493					0.0904320299059691
YPIPIILF	8	Unmodified	_YPIPIILF_					0	0	0		nc|ENSG00000114650|Q12770-3|SCAP;ENSG00000114650|ENST00000265565|SCAP;ENST00000420588.5_1_3:47476443-47484489:-|nuORF;SCAP|p.L553Ffs*57|1|0.59|ENSG00000114650|chr3:47419591-47419609|AGCCAGGGCTCCCTCACCC/-|frameshift_variant	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.28533935546875	2	488.299322	974.584091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.9	1	111.9	111.4	112.4	0								0	0	0	0.37595	1	29096	29096		2.8892	0.58649	1				59459	2577	34153	34154	72494	72494					0.09578208464768068
YPIPIILF	8	Unmodified	_YPIPIILF_					0	0	0		nc|ENSG00000114650|Q12770-3|SCAP;ENSG00000114650|ENST00000265565|SCAP;ENST00000420588.5_1_3:47476443-47484489:-|nuORF;SCAP|p.L553Ffs*57|1|0.59|ENSG00000114650|chr3:47419591-47419609|AGCCAGGGCTCCCTCACCC/-|frameshift_variant	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.28509521484375	2	488.299322	974.584091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.21	1	113.21	112.71	113.71	0								0	0	0	0.37595	1	29410	29410		2.8892	0.58649	1				59460	2577	34153	34154	72495	72495					0.09578208464768068
YPIPIILF	8	Unmodified	_YPIPIILF_					0	0	0		nc|ENSG00000114650|Q12770-3|SCAP;ENSG00000114650|ENST00000265565|SCAP;ENST00000420588.5_1_3:47476443-47484489:-|nuORF;SCAP|p.L553Ffs*57|1|0.59|ENSG00000114650|chr3:47419591-47419609|AGCCAGGGCTCCCTCACCC/-|frameshift_variant	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.28497314453125	2	488.299322	974.584091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.53	1	113.53	113.03	114.03	0								0	0	0	0.37595	1	29485	29485		2.8892	0.58649	1				59461	2577	34153	34154	72496	72496					0.09578208464768068
YPIPIILF	8	Unmodified	_YPIPIILF_					0	0	0		nc|ENSG00000114650|Q12770-3|SCAP;ENSG00000114650|ENST00000265565|SCAP;ENST00000420588.5_1_3:47476443-47484489:-|nuORF;SCAP|p.L553Ffs*57|1|0.59|ENSG00000114650|chr3:47419591-47419609|AGCCAGGGCTCCCTCACCC/-|frameshift_variant	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2850646972656	2	488.299322	974.584091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.63	1	114.61	114.11	115.11	-0.019096								0	0	0	0.37595	1	29755	29755		2.8892	0.58649	1				59462	2577	34153	34154	72497	72497					0.09578208464768068
YPIPIILF	8	Unmodified	_YPIPIILF_					0	0	0		nc|ENSG00000114650|Q12770-3|SCAP;ENSG00000114650|ENST00000265565|SCAP;ENST00000420588.5_1_3:47476443-47484489:-|nuORF;SCAP|p.L553Ffs*57|1|0.59|ENSG00000114650|chr3:47419591-47419609|AGCCAGGGCTCCCTCACCC/-|frameshift_variant	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.2856140136719	2	488.299322	974.584091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.37	1	117.34	116.84	117.84	-0.024147								0	0	0	0.37595	1	30381	30381		2.8892	0.58649	1				59463	2577	34153	34154	72498	72498					0.09578208464768068
YPIPIILF	8	Unmodified	_YPIPIILF_					0	0	0		nc|ENSG00000114650|Q12770-3|SCAP;ENSG00000114650|ENST00000265565|SCAP;ENST00000420588.5_1_3:47476443-47484489:-|nuORF;SCAP|p.L553Ffs*57|1|0.59|ENSG00000114650|chr3:47419591-47419609|AGCCAGGGCTCCCTCACCC/-|frameshift_variant	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.2852783203125	2	488.299322	974.584091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.46	1	115.47	114.97	115.97	0.018738								0	0	0	0.37595	1	29987	29987		2.8892	0.58649	1				59464	2577	34153	34154	72499	72499					0.09578208464768068
YPIPPSRF	8	Unmodified	_YPIPPSRF_					0	0	0			REV__nc|ENSG00000183337|Q6W2J9-3|BCOR	REV__nc|ENSG00000183337|Q6W2J9-3|BCOR	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7681579589844	2	488.766178	975.517802	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.862	1	41.862	41.362	42.362	0								0	0	0	0.35779	1	9061	9061		11.114	0.29054	1		+		59465	18257	34154	34155	72500	72500					0.029063926227081538
YPIVIHVE	8	Unmodified	_YPIVIHVE_					0	0	0		ENSG00000100065|ENST00000251973|CARD10;ENST00000488141.5_1_22:37887199-37892645:-|nuORF;nc|ENSG00000100065|Q9BWT7-2|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.28436279296875	2	485.273835	968.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.507	1	74.507	74.007	75.007	0								0	0	0	0.35251	1	19096	19096		13.508	0	1				59466	1526	34155	34156	72501	72501					0.04759259419893169
YPIVIHVE	8	Unmodified	_YPIVIHVE_					0	0	0		ENSG00000100065|ENST00000251973|CARD10;ENST00000488141.5_1_22:37887199-37892645:-|nuORF;nc|ENSG00000100065|Q9BWT7-2|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	485.28460693359375	2	485.273835	968.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.619	1	74.671	74.171	75.171	0.052361								0	0	0	0.34229	1	19123	19123		18.135	4.6271	1				59467	1526	34155	34156	72502	72502					0.04759259419893169
YPIVIHVEV	9	Unmodified	_YPIVIHVEV_					0	0	0		ENSG00000100065|ENST00000251973|CARD10;ENST00000488141.5_1_22:37887199-37892645:-|nuORF;nc|ENSG00000100065|Q9BWT7-2|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.7936401367188	2	534.808042	1067.60153	0.62478	0.00033414	-1.4054	-0.00075163	-0.78063	-0.00041749	534.8077954958175	63.68	0.66259	63.68	63.443	64.105	0					38	23	2	0	0	0	0.06608	1	15773	15773		46.921	22.247	1	323090			59468	1526	34156	34157	72503	72503					0.07043503999739187
YPIVIHVEV	9	Unmodified	_YPIVIHVEV_					0	0	0		ENSG00000100065|ENST00000251973|CARD10;ENST00000488141.5_1_22:37887199-37892645:-|nuORF;nc|ENSG00000100065|Q9BWT7-2|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.7937622070312	2	534.808042	1067.60153	0.45673	0.00024426	-0.95687	-0.00051174	-0.50014	-0.00026748	534.8080174352903	63.569	0.59905	63.665	63.416	64.015	0.095722					35	20	2	0	0	0	0.14205	1	15722	15722		32.117	7.4431	1	306880			59469	1526	34156	34157	72504	72504					0.07043503999739187
YPIVIHVEV	9	Unmodified	_YPIVIHVEV_					0	0	0		ENSG00000100065|ENST00000251973|CARD10;ENST00000488141.5_1_22:37887199-37892645:-|nuORF;nc|ENSG00000100065|Q9BWT7-2|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.79443359375	2	534.808042	1067.60153	0.64865	0.0003469	-1.1086	-0.0005929	-0.45997	-0.000246	534.8079251857968	63.702	0.45393	63.693	63.537	63.99	-0.0085564					28	15	2	0	0	0	0.11466	1	15760	15760		46.921	21.522	1	282650			59470	1526	34156	34157	72505	72505					0.07043503999739187
YPIWLCPFIL	10	Unmodified	_YPIWLCPFIL_					0	0	0		ENSG00000116133|ENST00000371269|DHCR24;nc|ENSG00000116133|Q15392-2|DHCR24	ENSG00000116133|ENST00000371269|DHCR24	ENSG00000116133|ENST00000371269|DHCR24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.24591064453125	3	422.231473	1263.67259	0.11069	4.6736E-05	-0.21706	-9.1649E-05	-0.10637	-4.4914E-05	422.231745961608	19.754	0.36448	19.699	19.452	19.816	-0.055693					17	12	2	0	0	0	0.32033	1	2324	2324		4.1895	0	1	43963			59471	2704	34157	34158	72506	72506					0.051298807129342094
YPKEADIVI	9	Unmodified	_YPKEADIVI_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2901611328125	2	524.289682	1046.56481	0.72871	0.00038205	-0.15599	-8.1782E-05	0.57272	0.00030027	524.2894566199526	50.288	0.76143	50.288	49.976	50.738	0					73	27	3	0	0	0	0.07944	1	11637	11637		41.956	7.8531	1	2036800			59472	326	34158	34159	72507	72507					0.043392073831682865
YPKEADIVI	9	Unmodified	_YPKEADIVI_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.2898559570312	2	524.289682	1046.56481	1.0208	0.0005352	-0.43233	-0.00022667	0.58848	0.00030854	524.2892888854619	50.284	0.80963	50.329	49.957	50.766	0.044891					76	29	3	0	0	0	0.026579	1	11626	11626		61.602	23.628	1	2145300			59473	326	34158	34159	72508	72508					0.043392073831682865
YPKEADIVI	9	Unmodified	_YPKEADIVI_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2896728515625	2	524.289682	1046.56481	1.0792	0.00056582	-0.46074	-0.00024156	0.61849	0.00032427	524.2892622283274	50.316	0.9325	50.337	49.966	50.898	0.020691					85	34	3	0	0	0	0.069366	1	11634	11634		45.7	11.597	1	2023900			59474	326	34158	34159	72509	72509					0.043392073831682865
YPKGAGEML	9	Oxidation (M)	_YPKGAGEM(Oxidation (M))L_		YPKGAGEM(1)L		YPKGAGEM(76)L	0	0	1		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	491.2392883300781	2	491.239135	980.463718	0.47254	0.00023213	0.15726	7.725E-05	0.6298	0.00030938	491.23911780889955	29.013	0.87305	29.013	28.76	29.633	0					81	31	4	0	0	0	0.012386	2	5156	5109;5156		75.761	27.415	1	1080600			59475	6059	34159	34160	72510;72511	72511		709			-0.027295675911545914
YPKGAGEML	9	Oxidation (M)	_YPKGAGEM(Oxidation (M))L_		YPKGAGEM(1)L		YPKGAGEM(93)L	0	0	1		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	491.23919677734375	2	491.239135	980.463718	0.34432	0.00016914	0.30868	0.00015164	0.653	0.00032078	491.23915206456456	28.986	0.97896	28.998	28.706	29.685	0.012266					72	33	3	0	0	0	0.0042138	2	5106	5106;5154		92.653	44.307	1	1108700			59476	6059	34159	34160	72512;72513	72512		709			-0.027295675911545914
YPKGAGEML	9	Oxidation (M)	_YPKGAGEM(Oxidation (M))L_		YPKGAGEM(1)L		YPKGAGEM(89)L	0	0	1		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	491.2393798828125	2	491.239135	980.463718	0.19316	9.4889E-05	0.585	0.00028737	0.77816	0.00038226	491.2392795012223	28.992	1.0171	29.005	28.728	29.745	0.013475					84	35	4	0	0	0	0.0046246	2	5140	5098;5140		89.401	31.929	1	1002900			59477	6059	34159	34160	72514;72515	72515		709			-0.027295675911545914
YPKGAGRVAF	10	Unmodified	_YPKGAGRVAF_					0	0	0		CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.7974853515625	2	533.295633	1064.57671	0.37862	0.00020192	0.74726	0.00039851	1.1259	0.00060043	533.7975891559241	31.675	0.47321	31.675	31.394	31.867	0					26	16	3	0	0	0	0.22916	1	5964	5964		29.082	7.3349	1	488660			59478	241	34160	34161	72516	72516					0.04700868917052503
YPKGAGRVAF	10	Unmodified	_YPKGAGRVAF_					0	0	0		CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.296142578125	2	533.295633	1064.57671	0.27155	0.00014482	0.80338	0.00042844	1.0749	0.00057326	533.296131942208	31.595	0.58754	31.637	31.322	31.909	0.042364					28	20	3	0	0	0	0.23542	1	5941	5941		39.95	15.276	1	715500			59479	241	34160	34161	72517	72517					0.04700868917052503
YPKGAGRVAF	10	Unmodified	_YPKGAGRVAF_					0	0	0		CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant;nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000107864|Q8NE35-2|CPEB3;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000113742|ENST00000265085|CPEB4	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	CPEB2|p.A540Cfs*21|1|0.06|ENSG00000137449|chr4:15066226-15066227|-/CTGTAATAACTTAAAA|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.296142578125	2	533.295633	1064.57671	0.45629	0.00024334	0.55389	0.00029539	1.0102	0.00053873	533.2959238313891	31.557	0.73859	31.598	31.125	31.864	0.040991					32	26	2	0	0	0	0.10145	1	5912	5912		47.749	23.075	1	577510			59480	241	34160	34161	72518	72518					0.04700868917052503
YPKGPHKAL	9	Unmodified	_YPKGPHKAL_					0	0	0			REV__ENSG00000167178|ENST00000453268|ISLR2	REV__ENSG00000167178|ENST00000453268|ISLR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2770690917969	2	505.792727	1009.5709	0.45684	0.00023107	-0.5765	-0.00029159	-0.11965	-6.052E-05	505.7923876802538	54.12	0.39932	54.183	54.01	54.41	0.063202					26	14	2	0	0	0	0.24913	1	12801	12801		12.532	5.2423	1	305010	+		59481	17368	34161	34162	72519	72519					0.06649770405374511
YPKIYYHPFAF	11	Unmodified	_YPKIYYHPFAF_					0	0	0			REV__nc|ENSG00000196912|Q8N2N9-4|ANKRD36B	REV__nc|ENSG00000196912|Q8N2N9-4|ANKRD36B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.2792053222656	3	482.579929	1444.71796	0.44763	0.00021602	1.3697	0.00066099	1.8173	0.000877	482.58051167030754	48.487	0.24312	48.53	48.371	48.614	0.043324					13	8	2	0	0	0	0.33202	1	11048	11048		2.8433	0	1	169570	+		59482	18694	34162	34163	72520	72520					0.01338822499633352
YPKKGTHII	9	Unmodified	_YPKKGTHII_					0	0	0			REV__ENSG00000197360|ENST00000357774|ZNF98	REV__ENSG00000197360|ENST00000357774|ZNF98	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8130493164062	2	528.813659	1055.61277	0.52093	0.00027547	0.21047	0.0001113	0.73139	0.00038677	528.8138701338909	82.083	0.95548	82.083	81.455	82.41	0					62	36	2	0	0	0	0.23767	1	21269	21269		18.146	1.0335	1	239840	+		59483	18730	34163	34164	72521	72521					0.08718326093912765
YPKKGTHII	9	Unmodified	_YPKKGTHII_					0	0	0			REV__ENSG00000197360|ENST00000357774|ZNF98	REV__ENSG00000197360|ENST00000357774|ZNF98	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.813232421875	2	528.813659	1055.61277	0.587	0.00031042	-0.51796	-0.0002739	0.069046	3.6513E-05	528.8143073961136	71.198	11.108	71.174	70.185	81.293	-0.024864					870	413	6	0	0	0	0.19747	2	21153	21142;21153		24.021	4.7636	1	170250000	+		59484	18730	34163	34164	72522;72523	72523					0.08718326093912765
YPKKGTHII	9	Unmodified	_YPKKGTHII_					0	0	0			REV__ENSG00000197360|ENST00000357774|ZNF98	REV__ENSG00000197360|ENST00000357774|ZNF98	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.815185546875	2	528.813659	1055.61277	0.567	0.00029984	-0.26922	-0.00014236	0.29778	0.00015747	528.8135483541471	82.076	1.6157	82.052	81.564	83.179	-0.02404					92	64	2	0	0	0	0.19747	1	21290	21290		24.021	3.606	1	270040	+		59485	18730	34163	34164	72524	72524					0.08718326093912765
YPKLDSNRL	9	Unmodified	_YPKLDSNRL_					0	0	0			REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3041381835938	2	553.303655	1104.59276	0.73823	0.00040847	-0.096715	-5.3513E-05	0.64152	0.00035495	553.3034655685838	54.929	0.51811	54.929	54.68	55.198	0					30	18	2	0	0	0	0.15763	1	13104	13104		29.841	1.3461	1	1056100	+		59486	13760	34164	34165	72525	72525					0.04464530363270569
YPKLDSNRL	9	Unmodified	_YPKLDSNRL_					0	0	0			REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.303955078125	2	553.303655	1104.59276	0.66976	0.00037058	-0.28437	-0.00015734	0.38539	0.00021324	553.3033675876488	54.852	0.4899	54.915	54.667	55.157	0.063206					35	17	3	0	0	0	0.15763	1	13066	13066		29.841	2.6173	1	804650	+		59487	13760	34164	34165	72526	72526					0.04464530363270569
YPKLDSNRL	9	Unmodified	_YPKLDSNRL_					0	0	0			REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	553.303655	1104.59276	0.73823	0.00040847	-0.096715	-5.3513E-05	0.64152	0.00035495	553.3034655685838	54.929	0.51811	54.929	54.68	55.198	0	-0.027375	-4.7495E-05	NaN	29.841	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1056100	+		59488	13760	34164	34165							0.04464530363270569
YPKLDSNRL	9	Unmodified	_YPKLDSNRL_					0	0	0			REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.303655	1104.59276	0.66976	0.00037058	-0.28437	-0.00015734	0.38539	0.00021324	553.3033675876488	54.852	0.4899	54.915	54.667	55.157	0.063206	-0.041002	-0.00025515	NaN	29.841	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	804650	+		59489	13760	34164	34165							0.04464530363270569
YPKLDSNRL	9	Unmodified	_YPKLDSNRL_					0	0	0			REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	REV__nc|ENSG00000072415|Q8N3R9-2|PALS1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	553.303655	1104.59276	0.67247	0.00037208	0.35338	0.00019552	1.0258	0.0005676	553.3034932159032	55.042	0.44268	55.025	54.82	55.263	-0.017097	0.068377	0.00045058	NaN	29.841	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	910720	+		59490	13760	34164	34165							0.04464530363270569
YPKLVPFRP	9	Unmodified	_YPKLVPFRP_					0	0	0		ENSG00000127249|ENST00000342695|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	ENSG00000127249|ENST00000342695|ATP13A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.7733154296875	2	558.831852	1115.64915	0.32959	0.00018419	-0.72015	-0.00040244	-0.39056	-0.00021826	558.8314984153664	38.09	0.90268	38.09	37.616	38.518	0					57	31	3	0	0	0	0.25879	1	7779	7779		4.756	4.756	1	409190			59491	3310	34165	34166	72527	72527					0.09595202990590224
YPKQSFTMV	9	Oxidation (M)	_YPKQSFTM(Oxidation (M))V_		YPKQSFTM(1)V		YPKQSFTM(100)V	0	0	1		ENST00000584106.1_1_17:37026403-37055075:+|nuORF;ENSG00000002834|ENST00000318008|LASP1;nc|ENSG00000002834|Q14847-2|LASP1	ENST00000584106.1_1_17:37026403-37055075:+|nuORF	ENST00000584106.1_1_17:37026403-37055075:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.7733154296875	2	558.773342	1115.53213	0.67352	0.00037635	-1.0666	-0.00059597	-0.39304	-0.00021962	558.7729981768169	37.454	1.1449	37.454	37.124	38.269	0					124	40	5	0	0	0	0.0028542	1	7689	7689		103.42	30.223	1	2846100			59492	298	34166	34167	72528	72528		23			-0.021013230113112513
YPKRCAPCL	9	Unmodified	_YPKRCAPCL_					0	0	0			REV__nc|ENSG00000080802|O95628-5|CNOT4	REV__nc|ENSG00000080802|O95628-5|CNOT4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.830078125	2	525.764797	1049.51504	0.46618	0.0002451	0.15939	8.38E-05	0.62556	0.0003289	526.2673956157375	16.887	0.26222	16.887	16.779	17.041	0					9	8	2	0	0	0	0.25622	1	1503	1503		7.2892	2.0586	1	23083	+		59493	13237	34167	34168	72529	72529					-0.007735220981203383
YPKRLHKV	8	Unmodified	_YPKRLHKV_					0	0	0		ENSG00000156510|ENST00000354624|HKDC1;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENST00000488706.1_1_10:71007290-71008567:+|nuORF	ENSG00000156510|ENST00000354624|HKDC1	ENSG00000156510|ENST00000354624|HKDC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	520.8221435546875	2	520.821818	1039.62908	0.57145	0.00029762	0.59632	0.00031058	1.1678	0.0006082	520.8220523059302	48.408	0.54202	48.451	48.243	48.785	0.04332					40	19	3	0	0	0	0.45015	1	11109	11109		5.7604	0.52976	1	491640			59494	5240	34168	34169	72530	72530					0.11085452050656386
YPKRLHKV	8	Unmodified	_YPKRLHKV_					0	0	0		ENSG00000156510|ENST00000354624|HKDC1;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENST00000488706.1_1_10:71007290-71008567:+|nuORF	ENSG00000156510|ENST00000354624|HKDC1	ENSG00000156510|ENST00000354624|HKDC1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	520.821818	1039.62908	0.60072	0.00031287	0.11867	6.1807E-05	0.71939	0.00037467	520.8218281043677	48.5	0.48345	48.5	48.238	48.721	0	0.024222	-0.0003256	NaN	5.7604	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	529230			59495	5240	34168	34169							0.11085452050656386
YPKRPLLGL	9	Unmodified	_YPKRPLLGL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8318481445312	2	528.831852	1055.64915	0.44592	0.00023581	-0.17086	-9.0359E-05	0.27505	0.00014546	528.8316496692167	43.872	0.86698	43.872	43.388	44.255	0					75	31	4	0	0	0	0.0069594	1	9653	9653		92.822	58.72	1	1821200			59496	1364	34169	34170	72531	72531					0.12355202990602265
YPKRPLLGL	9	Unmodified	_YPKRPLLGL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8319702148438	2	528.831852	1055.64915	0.46694	0.00024693	-0.20469	-0.00010825	0.26225	0.00013868	528.8316685339896	43.606	0.75491	43.684	43.373	44.128	0.077515					68	27	3	0	0	0	0.0069594	1	9639	9639		92.822	52.865	1	1656800			59497	1364	34169	34170	72532	72532					0.12355202990602265
YPKRPLLGL	9	Unmodified	_YPKRPLLGL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.8319702148438	2	528.831852	1055.64915	0.56383	0.00029817	-0.37044	-0.0001959	0.19339	0.00010227	528.8316523238764	43.614	0.77294	43.698	43.41	44.183	0.083992					65	28	3	0	0	0	0.0069594	1	9580	9580		92.822	52.865	1	1606100			59498	1364	34169	34170	72533	72533					0.12355202990602265
YPLDGEKILHI	11	Unmodified	_YPLDGEKILHI_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10;ENST00000557583.1_1_14:58690362-58697140:+|nuORF	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.2434997558594	3	433.243206	1296.70779	0.33083	0.00014333	0.0027613	1.1963E-06	0.33359	0.00014452	433.243369915473	58.377	0.46697	58.362	58.141	58.608	-0.014267					36	16	3	0	0	0	0.14667	1	14155	14155		35.996	21.158	1	439090			59499	3600	34170	34171	72534	72534					0.07130214774429078
YPLDGEKILHI	11	Unmodified	_YPLDGEKILHI_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10;ENST00000557583.1_1_14:58690362-58697140:+|nuORF	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	433.243206	1296.70779	0.00048057	2.082E-07	0.37491	0.00016243	0.37539	0.00016263	433.24337075474915	58.262	0.58183	58.262	58.1	58.682	0	-0.025043	0.00022011	NaN	35.996	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340010			59500	3600	34170	34171							0.07130214774429078
YPLDGEKILHI	11	Unmodified	_YPLDGEKILHI_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10;ENST00000557583.1_1_14:58690362-58697140:+|nuORF	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	433.243206	1296.70779	0.0064118	2.7779E-06	0.31404	0.00013606	0.32045	0.00013883	433.24337354786485	58.151	0.499	58.237	58.025	58.524	0.085621	-0.050204	0.000141	NaN	35.996	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475500			59501	3600	34170	34171							0.07130214774429078
YPLDLLLKL	9	Unmodified	_YPLDLLLKL_					0	0	0		ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;nc|ENSG00000196655|Q9Y296-2|TRAPPC4	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.2769165039062	2	544.341718	1086.66888	0.67643	0.00036821	-0.37618	-0.00020477	0.30025	0.00016344	544.3415396904468	85.302	0.35319	85.302	85.174	85.527	0					19	13	2	0	0	0	0.22143	1	22413	22413		24.991	11.085	1	69450			59502	7891	34171	34172	72535	72535					0.12901534210709542
YPLDLLLKL	9	Unmodified	_YPLDLLLKL_					0	0	0		ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;nc|ENSG00000196655|Q9Y296-2|TRAPPC4	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.2765502929688	2	544.341718	1086.66888	0.77138	0.00041989	-0.4975	-0.00027081	0.27388	0.00014909	544.3413509590619	85.234	0.30127	85.315	85.182	85.483	0.080887					17	11	2	0	0	0	0.23749	1	22371	22371		20.415	6.5085	1	99693			59503	7891	34171	34172	72536	72536					0.12901534210709542
YPLELYPAF	9	Unmodified	_YPLELYPAF_					0	0	0		ENSG00000143418|ENST00000368954|CERS2;ENST00000482825.7_1_1:150936938-150939392:-|nuORF	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3027954101562	2	556.786776	1111.559	0.51424	0.00028632	0.15091	8.4022E-05	0.66515	0.00037035	556.7865855901254	85.416	0.95869	85.416	84.972	85.931	0					110	36	4	0	0	0	0.21303	3	22395	22395;22444;22495		21.747	8.7042	1	578860			59504	4514	34172	34173	72537;72538;72539	72537					0.0076810887148894835
YPLELYPAF	9	Unmodified	_YPLELYPAF_					0	0	0		ENSG00000143418|ENST00000368954|CERS2;ENST00000482825.7_1_1:150936938-150939392:-|nuORF	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.3025512695312	2	556.786776	1111.559	0.50726	0.00028243	0.13895	7.7368E-05	0.64621	0.0003598	556.7864615635286	85.276	0.96014	85.356	84.975	85.935	0.080879					98	36	4	0	0	0	0.21303	3	22355	22355;22403;22456		21.747	4.6601	1	578460			59505	4514	34172	34173	72540;72541;72542	72540					0.0076810887148894835
YPLELYPAF	9	Unmodified	_YPLELYPAF_					0	0	0		ENSG00000143418|ENST00000368954|CERS2;ENST00000482825.7_1_1:150936938-150939392:-|nuORF	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.3026733398438	2	556.786776	1111.559	0.464	0.00025835	0.12019	6.692E-05	0.58419	0.00032527	556.7865270276928	85.38	0.93225	85.367	85.087	86.019	-0.01284					78	34	3	0	0	0	0.1669	4	22424	22375;22424;22469;22519		28.487	11.4	1	563730			59506	4514	34172	34173	72543;72544;72545;72546	72544					0.0076810887148894835
YPLERGFIYV	10	Unmodified	_YPLERGFIYV_					0	0	0		ENST00000293880.9_1_11:57098199-57100416:-|nuORF;ENSG00000149136|ENST00000278412|SSRP1	ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENST00000293880.9_1_11:57098199-57100416:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.83740234375	2	628.837331	1255.66011	0.54221	0.00034096	-0.058751	-3.6945E-05	0.48346	0.00030402	628.837224058969	66.264	0.71072	66.264	66.007	66.717	0					64	24	3	0	0	0	0.013686	2	16607	16560;16607		80.676	58.018	1	1345200			59507	4848	34173	34174	72547;72548	72548					0.04250560574246265
YPLERGFIYV	10	Unmodified	_YPLERGFIYV_					0	0	0		ENST00000293880.9_1_11:57098199-57100416:-|nuORF;ENSG00000149136|ENST00000278412|SSRP1	ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENST00000293880.9_1_11:57098199-57100416:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	628.837646484375	2	628.837331	1255.66011	0.30995	0.00019491	0.035395	2.2258E-05	0.34535	0.00021717	628.8373566412813	66.13	0.8842	66.213	65.942	66.826	0.083832					64	31	3	0	0	0	0.024749	2	16504	16504;16553		75.571	50.58	1	1213400			59508	4848	34173	34174	72549;72550	72549					0.04250560574246265
YPLERGFIYV	10	Unmodified	_YPLERGFIYV_					0	0	0		ENST00000293880.9_1_11:57098199-57100416:-|nuORF;ENSG00000149136|ENST00000278412|SSRP1	ENST00000293880.9_1_11:57098199-57100416:-|nuORF	ENST00000293880.9_1_11:57098199-57100416:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	628.8374633789062	2	628.837331	1255.66011	0.29504	0.00018553	0.051786	3.2565E-05	0.34682	0.0002181	628.8374218828674	66.286	0.76871	66.273	65.97	66.739	-0.013596					68	27	3	0	0	0	0.013686	2	16545	16545;16595		80.676	52.182	1	1296000			59509	4848	34173	34174	72551;72552	72551					0.04250560574246265
YPLFYLPF	8	Unmodified	_YPLFYLPF_					0	0	0			REV__ENST00000469772.5_1_3:120461600-120489617:+|nuORF	REV__ENST00000469772.5_1_3:120461600-120489617:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.2955322265625	2	530.281129	1058.54771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.09	1	115.09	114.59	115.59	0								0	0	0	0.37595	1	29836	29836		2.8892	0	1		+		59510	21346	34174	34175	72553	72553					0.02077331568034424
YPLFYLPF	8	Unmodified	_YPLFYLPF_					0	0	0			REV__ENST00000469772.5_1_3:120461600-120489617:+|nuORF	REV__ENST00000469772.5_1_3:120461600-120489617:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.296142578125	2	530.281129	1058.54771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.89	1	118.89	118.39	119.39	0								0	0	0	0.37595	1	30698	30698		2.8892	0	1		+		59511	21346	34174	34175	72554	72554					0.02077331568034424
YPLFYLPF	8	Unmodified	_YPLFYLPF_					0	0	0			REV__ENST00000469772.5_1_3:120461600-120489617:+|nuORF	REV__ENST00000469772.5_1_3:120461600-120489617:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.295654296875	2	530.281129	1058.54771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.09	1	114.07	113.57	114.57	-0.019096								0	0	0	0.3683	1	29637	29637		6.3541	0.14832	1		+		59512	21346	34174	34175	72555	72555					0.02077331568034424
YPLFYLPF	8	Unmodified	_YPLFYLPF_					0	0	0			REV__ENST00000469772.5_1_3:120461600-120489617:+|nuORF	REV__ENST00000469772.5_1_3:120461600-120489617:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.2952270507812	2	530.281129	1058.54771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.86	1	114.84	114.34	115.34	-0.019096								0	0	0	0.3683	1	29804	29804		6.3541	0.59368	1		+		59513	21346	34174	34175	72556	72556					0.02077331568034424
YPLFYLPF	8	Unmodified	_YPLFYLPF_					0	0	0			REV__ENST00000469772.5_1_3:120461600-120489617:+|nuORF	REV__ENST00000469772.5_1_3:120461600-120489617:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.3319702148438	2	530.281129	1058.54771	0.64778	0.00034351	-3.8112	-0.002021	-3.1635	-0.0016775	530.2796418095896	64.581	0.54639	64.572	64.315	64.862	-0.0095291					29	19	2	0	0	0	0.33618	1	16028	16028		17.087	2.5049	1	144510	+		59514	21346	34174	34175	72557	72557					0.02077331568034424
YPLGGGLTLV	10	Unmodified	_YPLGGGLTLV_					0	0	0			REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5	REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.2947998046875	2	495.286943	988.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.582	1	44.65	44.15	45.15	0.068569								0	0	0	0.26329	1	9890	9890		32.305	1.6689	1		+		59515	15019	34175	34176	72558	72558					0.06459528591381059
YPLGRASG	8	Unmodified	_YPLGRASG_					0	0	0			REV__ENST00000314891.10_1_15:34651206-34652316:-|nuORF	REV__ENST00000314891.10_1_15:34651206-34652316:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.25775146484375	2	410.719227	819.423902	0.19522	8.0179E-05	-2.0587	-0.00084555	-1.8635	-0.00076537	410.71857396907996	84.307	0.1168	84.307	84.23	84.346	0					6	4	2	0	0	0	0.3439	1	22081	22081		2.8892	0.58649	1	44593	+		59516	19926	34176	34177	72559	72559					0.006966735204287033
YPLGRLRV	8	Unmodified	_YPLGRLRV_					0	0	0			REV__ENSG00000103067|ENST00000473183|ESRP2	REV__ENSG00000103067|ENST00000473183|ESRP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.298583984375	2	487.300719	972.586885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.852	1	81.852	81.352	82.352	0								0	0	0	0.35251	1	21340	21340		13.508	2.684	1		+		59517	14354	34177	34178	72560	72560					0.0994947664225947
YPLHAIMEI	9	Oxidation (M)	_YPLHAIM(Oxidation (M))EI_		YPLHAIM(1)EI		YPLHAIM(170)EI	0	0	1		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7839965820312	2	551.78371	1101.55287	0.37418	0.00020647	0.80259	0.00044286	1.1768	0.00064932	551.7838974985065	52.33	1.1762	52.33	51.836	53.012	0					162	42	5	0	0	0	2.4965E-07	3	12299	12250;12299;12346		170.4	109.04	1	4185000			59518	2256	34178	34179	72561;72562;72563	72562		279			0.006152673683345711
YPLHAIMEI	9	Oxidation (M)	_YPLHAIM(Oxidation (M))EI_		YPLHAIM(1)EI		YPLHAIM(170)EI	0	0	1		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7838745117188	2	551.78371	1101.55287	0.44582	0.000246	0.65881	0.00036352	1.1046	0.00060952	551.7838792995766	52.259	1.0612	52.309	51.846	52.907	0.050571					150	38	5	0	0	0	2.4965E-07	3	12277	12229;12277;12331		170.4	99.264	1	3529600			59519	2256	34178	34179	72564;72565;72566	72565		279			0.006152673683345711
YPLHAIMEI	9	Oxidation (M)	_YPLHAIM(Oxidation (M))EI_		YPLHAIM(1)EI		YPLHAIM(140)EI	0	0	1		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.7843627929688	2	551.78371	1101.55287	0.22228	0.00012265	1.0763	0.0005939	1.2986	0.00071655	551.7839906244127	52.467	1.2486	52.466	51.902	53.151	-0.00080872					169	45	6	0	0	0	7.6375E-05	3	12300	12206;12300;12353		144.66	87.652	1	3592500			59520	2256	34178	34179	72567;72568;72569	72568		279			0.006152673683345711
YPLHILFV	8	Unmodified	_YPLHILFV_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2948913574219	2	501.294571	1000.57459	0.18279	9.1633E-05	-0.9908	-0.00049668	-0.808	-0.00040505	501.2940762116169	73.751	2.622	73.751	72.799	75.421	0					231	92	3	0	0	0	0.015002	3	18851	18851;18905;19034		108.76	31.562	1	22697000			59521	1556	34179	34180	72570;72571;72572	72570					0.07432440179240984
YPLHILFV	8	Unmodified	_YPLHILFV_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	501.2950134277344	2	501.294571	1000.57459	0.26053	0.0001306	-1.0443	-0.00052348	-0.78373	-0.00039288	501.2940726743165	73.731	2.6396	73.783	72.788	75.427	0.052361					251	94	4	0	0	0	0.015002	4	18839	18839;18892;18899;19112		108.76	31.562	1	26074000			59522	1556	34179	34180	72573;72574;72575;72576	72573					0.07432440179240984
YPLHILFV	8	Unmodified	_YPLHILFV_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2950134277344	2	501.294571	1000.57459	0.2936	0.00014718	-1.0933	-0.00054806	-0.79969	-0.00040088	501.29397584734164	73.852	2.654	73.822	72.816	75.47	-0.030655					222	96	3	0	0	0	0.015002	5	18870	18822;18870;18914;19026;19062		108.76	31.562	1	22223000			59523	1556	34179	34180	72577;72578;72579;72580;72581	72578					0.07432440179240984
YPLIINAI	8	Unmodified	_YPLIINAI_					0	0	0		ENST00000536494.5_1_12:64055087-64062592:-|nuORF;ENST00000306389.7_1_12:64015105-64059617:-|nuORF;ENSG00000177990|ENST00000324472|DPY19L2	ENST00000536494.5_1_12:64055087-64062592:-|nuORF	ENST00000536494.5_1_12:64055087-64062592:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	458.7783508300781	2	458.778754	915.542954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.669	1	78.638	78.138	79.138	-0.030434								0	0	0	0.20846	1	20349	20349		42.968	8.7807	1				59524	11682	34180	34181	72582	72582					0.08180447425263537
YPLIIYDVF	9	Unmodified	_YPLIIYDVF_					0	0	0		ENSG00000106049|ENST00000265395|HIBADH;ENST00000496814.1_1_7:27689076-27702407:-|nuORF	ENSG00000106049|ENST00000265395|HIBADH	ENSG00000106049|ENST00000265395|HIBADH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.2803955078125	2	571.810251	1141.60595	0.46564	0.00026626	-2.718	-0.0015542	-2.2524	-0.0012879	571.8087009754348	53.718	0.37926	53.718	53.595	53.974	0					17	13	2	0	0	0	0.23783	1	12724	12724		18.135	9.5417	1	126110			59525	2052	34181	34182	72583	72583					0.040809684226587706
YPLIPVGKLV	10	Unmodified	_YPLIPVGKLV_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2786865234375	2	549.84971	1097.68487	0.36246	0.0001993	0.34974	0.00019231	0.7122	0.0003916	549.8498824378435	69.105	0.58614	69.105	68.812	69.398	0					62	20	4	0	0	0	0.19457	1	17430	17430		49.933	29.479	1	896670			59526	3003	34182	34183	72584	72584					0.1399324044759851
YPLIPVGKLV	10	Unmodified	_YPLIPVGKLV_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2787475585938	2	549.84971	1097.68487	0.54993	0.00030238	0.22245	0.00012232	0.77239	0.0004247	549.8498124922987	69.09	0.58466	69.162	68.88	69.465	0.071938					61	20	4	0	0	0	0.19457	1	17442	17442		49.933	36.027	1	965620			59527	3003	34182	34183	72585	72585					0.1399324044759851
YPLIPVGKLV	10	Unmodified	_YPLIPVGKLV_					0	0	0		ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	ENSG00000121691|ENST00000241052|CAT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2787475585938	2	549.84971	1097.68487	0.39005	0.00021447	0.40244	0.00022128	0.7925	0.00043575	549.8498510319017	69.139	0.69939	69.12	68.843	69.542	-0.01915					63	24	4	0	0	0	0.2266	1	17468	17468		41.84	23.693	1	867130			59528	3003	34182	34183	72586	72586					0.1399324044759851
YPLKATSTV	9	Unmodified	_YPLKATSTV_					0	0	0		ENSG00000155659|ENST00000374737|VSIG4;nc|ENSG00000155659|Q9Y279-2|VSIG4;nc|ENSG00000155659|Q9Y279-3|VSIG4	ENSG00000155659|ENST00000374737|VSIG4	ENSG00000155659|ENST00000374737|VSIG4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.2769470214844	2	490.276575	978.538597	0.68914	0.00033787	0.28623	0.00014033	0.97537	0.0004782	490.2766118391856	33.914	0.68819	33.914	33.674	34.362	0					44	24	2	0	0	0	0.1558	1	6640	6640		41.956	22.699	1	420440			59529	5187	34183	34184	72587	72587					0.048469382116991255
YPLKATSTV	9	Unmodified	_YPLKATSTV_					0	0	0		ENSG00000155659|ENST00000374737|VSIG4;nc|ENSG00000155659|Q9Y279-2|VSIG4;nc|ENSG00000155659|Q9Y279-3|VSIG4	ENSG00000155659|ENST00000374737|VSIG4	ENSG00000155659|ENST00000374737|VSIG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2768859863281	2	490.276575	978.538597	0.89697	0.00043976	0.048597	2.3826E-05	0.94557	0.00046359	490.2763735535209	33.772	0.7208	33.838	33.596	34.317	0.06636					42	25	2	0	0	0	0.0054984	1	6574	6574		86.332	50.205	1	476600			59530	5187	34183	34184	72588	72588					0.048469382116991255
YPLKATSTV	9	Unmodified	_YPLKATSTV_					0	0	0		ENSG00000155659|ENST00000374737|VSIG4;nc|ENSG00000155659|Q9Y279-2|VSIG4;nc|ENSG00000155659|Q9Y279-3|VSIG4	ENSG00000155659|ENST00000374737|VSIG4	ENSG00000155659|ENST00000374737|VSIG4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2771301269531	2	490.276575	978.538597	0.17939	8.7953E-05	0.81353	0.00039886	0.99293	0.00048681	490.2768164765791	33.751	0.57611	33.818	33.577	34.153	0.066704					36	20	2	0	0	0	0.0037449	1	6573	6573		96.367	52.508	1	505010			59531	5187	34183	34184	72589	72589					0.048469382116991255
YPLKNLNVV	9	Unmodified	_YPLKNLNVV_					0	0	0		nc|ENSG00000163590|Q5SGD2-3|PPM1L;nc|ENSG00000163590|Q5SGD2-2|PPM1L;ENSG00000163590|ENST00000498165|PPM1L	nc|ENSG00000163590|Q5SGD2-3|PPM1L	nc|ENSG00000163590|Q5SGD2-3|PPM1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.332275390625	2	530.313492	1058.61243	0.25779	0.00013671	-0.062471	-3.3129E-05	0.19532	0.00010358	530.3137617917846	65.214	1.2423	65.214	64.91	66.152	0					125	44	5	0	0	0	0.26879	1	16519	16519		13.508	0	1	4005800			59532	12798	34184	34185	72590	72590					0.08546906374044738
YPLKTGETI	9	Unmodified	_YPLKTGETI_					0	0	0		ENSG00000162407|ENST00000371250|PLPP3	ENSG00000162407|ENST00000371250|PLPP3	ENSG00000162407|ENST00000371250|PLPP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2802429199219	2	511.281857	1020.54916	-0.051724	-2.6445E-05	-1.87	-0.0009561	-1.9217	-0.00098254	511.28078616421567	39.138	0.74966	39.138	38.79	39.54	0					54	26	3	0	0	0	0.020233	1	8220	8220		63.961	10.128	1	430380			59533	5567	34185	34186	72591	72591					0.03970920866152028
YPLKTGETI	9	Unmodified	_YPLKTGETI_					0	0	0		ENSG00000162407|ENST00000371250|PLPP3	ENSG00000162407|ENST00000371250|PLPP3	ENSG00000162407|ENST00000371250|PLPP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.2813415527344	2	511.281857	1020.54916	0.12505	6.3934E-05	-1.7514	-0.00089544	-1.6263	-0.0008315	511.28086802212886	39	0.76227	39.092	38.786	39.548	0.09267					45	27	2	0	0	0	0.03069	1	8174	8174		60.074	6.2411	1	526490			59534	5567	34185	34186	72592	72592					0.03970920866152028
YPLKTGETI	9	Unmodified	_YPLKTGETI_					0	0	0		ENSG00000162407|ENST00000371250|PLPP3	ENSG00000162407|ENST00000371250|PLPP3	ENSG00000162407|ENST00000371250|PLPP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.2810363769531	2	511.281857	1020.54916	0.38086	0.00019472	-2.1503	-0.0010994	-1.7694	-0.00090468	511.28063180532774	39.024	0.61208	39.123	38.869	39.481	0.099407					38	21	2	0	0	0	0.03069	1	8186	8186		60.074	6.2411	1	468040			59535	5567	34185	34186	72593	72593					0.03970920866152028
YPLLISRI	8	Unmodified	_YPLLISRI_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000608543.1_1_1:155931890-155932010:-|nuORF;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.8055419921875	2	487.805303	973.596052	0.29328	0.00014306	0.11958	5.8332E-05	0.41286	0.0002014	487.8053799852287	62.233	1.9365	62.233	61.537	63.474	0					212	71	5	0	0	0	0.00054609	6	15357	15259;15310;15357;15407;15508;15714		149.99	29.544	1	10023000			59536	2733	34186	34187	72594;72595;72596;72597;72598;72599	72596					0.10819825207954636
YPLLISRI	8	Unmodified	_YPLLISRI_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000608543.1_1_1:155931890-155932010:-|nuORF;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.8054504394531	2	487.805303	973.596052	0.14929	7.2825E-05	0.26187	0.00012774	0.41116	0.00020057	487.8054383666553	62.175	2.0329	62.272	61.507	63.54	0.096985					215	73	5	0	0	0	0.00054609	7	15323	15224;15276;15323;15375;15429;15476;15688		149.99	40.365	1	10018000			59537	2733	34186	34187	72600;72601;72602;72603;72604;72605;72606	72602					0.10819825207954636
YPLLISRI	8	Unmodified	_YPLLISRI_					0	0	0		nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000608543.1_1_1:155931890-155932010:-|nuORF;ENST00000474428.6_1_1:155922555-155932010:-|nuORF	nc|ENSG00000116584|Q92974-3|ARHGEF2	nc|ENSG00000116584|Q92974-3|ARHGEF2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.8055725097656	2	487.805303	973.596052	0.26881	0.00013113	0.15038	7.3358E-05	0.4192	0.00020449	487.80538063646634	62.231	2.1637	62.222	61.4	63.564	-0.0085564					228	79	4	0	0	0	0.00054609	7	15335	15239;15290;15335;15386;15435;15488;15708		149.99	39.259	1	9923000			59538	2733	34186	34187	72607;72608;72609;72610;72611;72612;72613	72609					0.10819825207954636
YPLLLKEL	8	Unmodified	_YPLLLKEL_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	494.8072509765625	2	494.807511	987.600469	0.5772	0.0002856	-0.59888	-0.00029633	-0.021676	-1.0726E-05	494.80720818361374	64.502	0.9489	64.595	63.9	64.848	0.092888					62	34	2	0	0	0	0.092646	1	16013	16013		81.89	0	1	409270			59539	3130	34187	34188	72614	72614					0.10617289630840787
YPLLLQSI	8	Unmodified	_YPLLLQSI_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.78399658203125	2	473.784036	945.553519	0.10188	4.8268E-05	0.14701	6.9649E-05	0.24888	0.00011792	473.78391120121375	80.083	1.1326	80.083	79.467	80.599	0					118	42	4	0	0	0	0.050494	2	20801	20801;20853		77.984	24.409	1	857330			59540	1073	34188	34189	72615;72616	72615					0.07856430079709753
YPLLLQSI	8	Unmodified	_YPLLLQSI_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7839050292969	2	473.784036	945.553519	0.20027	9.4887E-05	-0.026071	-1.2352E-05	0.1742	8.2535E-05	473.78389369885303	80.077	0.98173	80.139	79.643	80.625	0.061417					107	36	4	0	0	0	0.029359	2	20763	20763;20812		89.427	33.577	1	977050			59541	1073	34188	34189	72617;72618	72617					0.07856430079709753
YPLLLQSI	8	Unmodified	_YPLLLQSI_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.78399658203125	2	473.784036	945.553519	0.24388	0.00011554	0.07997	3.7888E-05	0.32385	0.00015343	473.7838534987138	80.135	1.3138	80.108	79.445	80.759	-0.026825					118	47	4	0	0	0	0.029359	3	20843	20797;20843;20900		89.427	35.851	1	973840			59542	1073	34188	34189	72619;72620;72621	72620					0.07856430079709753
YPLLLREL	8	Unmodified	_YPLLLREL_					0	0	0		nc|ENSG00000156299|Q13009-2|TIAM1;ENSG00000156299|ENST00000541036|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.81048583984375	2	508.810585	1015.60662	0.32209	0.00016388	-0.034775	-1.7694E-05	0.28731	0.00014619	508.8103443525736	65.514	2.0615	65.514	64.539	66.6	0					168	74	4	0	0	0	0.17289	4	16377	16280;16327;16377;16428		47.749	0	1	1096000			59543	5230	34189	34190	72622;72623;72624;72625	72624					0.09943807862362064
YPLLLREL	8	Unmodified	_YPLLLREL_					0	0	0		nc|ENSG00000156299|Q13009-2|TIAM1;ENSG00000156299|ENST00000541036|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8106384277344	2	508.810585	1015.60662	0.058713	2.9874E-05	0.23964	0.00012193	0.29835	0.00015181	508.8104815440497	65.356	1.5907	65.445	64.578	66.169	0.088882					144	58	4	0	0	0	0.17289	3	16239	16239;16287;16341		47.749	0	1	1132200			59544	5230	34189	34190	72626;72627;72628	72626					0.09943807862362064
YPLLLREL	8	Unmodified	_YPLLLREL_					0	0	0		nc|ENSG00000156299|Q13009-2|TIAM1;ENSG00000156299|ENST00000541036|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.810302734375	2	508.810585	1015.60662	0.22402	0.00011398	0.0068599	3.4904E-06	0.23088	0.00011747	508.81043141468734	65.528	2.1707	65.517	64.493	66.664	-0.011337					154	78	3	0	0	0	0.12475	3	16338	16282;16338;16389		56.177	0	1	1278800			59545	5230	34189	34190	72629;72630;72631	72630					0.09943807862362064
YPLLVQKL	8	Unmodified	_YPLLVQKL_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2894287109375	2	487.307678	972.600803	0.46162	0.00022495	-2.7886	-0.0013589	-2.327	-0.0011339	487.3061936897112	56.714	0.52144	56.792	56.462	56.983	0.078674					28	19	2	0	0	0	0.25425	1	13589	13589		36.044	5.8194	1	218520			59546	2995	34190	34191	72632	72632					0.11340709350690759
YPLMEEIGF	9	Unmodified	_YPLMEEIGF_					0	0	0		ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2772827148438	2	549.762443	1097.51033	0.37281	0.00020496	-0.44345	-0.00024379	-0.070641	-3.8836E-05	549.7620447811747	80.781	1.169	80.781	80.389	81.558	0					178	52	5	0	0	0	0.30166	1	21124	21124		8.5933	0.68312	1	831670			59547	4942	34191	34192	72633	72633					-0.03452127759874202
YPLQTVQSI	9	Unmodified	_YPLQTVQSI_					0	0	0		ENST00000447566.5_1_22:41166840-41215302:-|nuORF;ENSG00000100372|ENST00000435456|SLC25A17	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.787841796875	2	524.787307	1047.56006	0.52797	0.00027707	0.28283	0.00014843	0.8108	0.0004255	524.7875302792975	58.843	0.45657	58.843	58.624	59.081	0					27	15	2	0	0	0	0.04299	1	14331	14331		55.503	5.5697	1	428550			59548	1583	34192	34193	72634	72634					0.038183232404207956
YPLQTVQSI	9	Unmodified	_YPLQTVQSI_					0	0	0		ENST00000447566.5_1_22:41166840-41215302:-|nuORF;ENSG00000100372|ENST00000435456|SLC25A17	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	ENST00000447566.5_1_22:41166840-41215302:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	524.7877197265625	2	524.787307	1047.56006	0.52674	0.00027643	0.14239	7.4723E-05	0.66913	0.00035115	524.7874962150654	58.744	0.51759	58.835	58.53	59.047	0.091301					32	17	2	0	0	0	0.032589	1	14265	14265		59.368	9.4354	1	408390			59549	1583	34192	34193	72635	72635					0.038183232404207956
YPLRNLSRK	9	Unmodified	_YPLRNLSRK_					0	0	0		nc|ENSG00000157782|Q9NZU7-2|CABP1;nc|ENSG00000157782|Q9NZU7-1|CABP1	nc|ENSG00000157782|Q9NZU7-2|CABP1	nc|ENSG00000157782|Q9NZU7-2|CABP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.2901000976562	2	573.840739	1145.66693	NaN	NaN	NaN	NaN	NaN	NaN	NaN	12.096	1	11.999	11.499	12.499	-0.096607								0	0	0	0.26704	1	27	27		0.6015	0	1				59550	12778	34193	34194	72636	72636					0.09991918245464149
YPLSGAELFF	10	Unmodified	_YPLSGAELFF_					0	0	0			REV__ENST00000486482.1_1_19:10221837-10222140:+|nuORF	REV__ENST00000486482.1_1_19:10221837-10222140:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2715454101562	2	572.289682	1142.56481	0.56392	0.00032273	-0.0023398	-1.339E-06	0.56158	0.00032139	572.289531365174	77.505	0.42964	77.505	77.366	77.796	0					22	15	2	0	0	0	0.2504	1	20091	20091		34.102	12.356	1	108340	+		59551	21551	34194	34195	72637	72637					-0.0007679261680095806
YPLSGAELFF	10	Unmodified	_YPLSGAELFF_					0	0	0			REV__ENST00000486482.1_1_19:10221837-10222140:+|nuORF	REV__ENST00000486482.1_1_19:10221837-10222140:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.271728515625	2	572.289682	1142.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.77	1	77.738	77.238	78.238	-0.031334								0	0	0	0.30803	1	20074	20074		26.884	0	1		+		59552	21551	34194	34195	72638	72638					-0.0007679261680095806
YPLSGAELFF	10	Unmodified	_YPLSGAELFF_					0	0	0			REV__ENST00000486482.1_1_19:10221837-10222140:+|nuORF	REV__ENST00000486482.1_1_19:10221837-10222140:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2714233398438	2	572.289682	1142.56481	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.923	1	77.892	77.392	78.392	-0.030434								0	0	0	0.30803	1	20120	20120		26.884	1.4843	1		+		59553	21551	34194	34195	72639	72639					-0.0007679261680095806
YPLSGAELFF	10	Unmodified	_YPLSGAELFF_					0	0	0			REV__ENST00000486482.1_1_19:10221837-10222140:+|nuORF	REV__ENST00000486482.1_1_19:10221837-10222140:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	572.289682	1142.56481	0.42427	0.00024281	-0.52856	-0.00030249	-0.10428	-5.9681E-05	572.2895027736948	77.174	0.5457	77.229	76.833	77.378	0.055412	-0.16419	0.00011179	NaN	34.102	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86064	+		59554	21551	34194	34195							-0.0007679261680095806
YPLSGAELFF	10	Unmodified	_YPLSGAELFF_					0	0	0			REV__ENST00000486482.1_1_19:10221837-10222140:+|nuORF	REV__ENST00000486482.1_1_19:10221837-10222140:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	572.289682	1142.56481	0.66053	0.00037801	-0.75674	-0.00043308	-0.096217	-5.5064E-05	572.2890542100946	77.477	0.46678	77.446	77.237	77.704	-0.031334	0.05282	-0.00014938	NaN	34.102	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86420	+		59555	21551	34194	34195							-0.0007679261680095806
YPLTFIQV	8	Unmodified	_YPLTFIQV_					0	0	0		nc|ENSG00000170266|P16278-2|GLB1;nc|ENSG00000170266|P16278-3|GLB1;nc|ENSG00000170266|P16278|GLB1;ENSG00000170266|ENST00000307363|GLB1;ENST00000473477.1_1_3:33063042-33065751:-|nuORF	nc|ENSG00000170266|P16278-2|GLB1	nc|ENSG00000170266|P16278-2|GLB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7763671875	2	490.776211	979.537869	0.31478	0.00015449	0.23447	0.00011507	0.54926	0.00026956	490.77615759360305	80.385	0.53297	80.385	80.124	80.657	0					48	19	3	0	0	0	0.33441	1	20878	20878		26.884	9.9414	1	348350			59556	6437	34195	34196	72640	72640					0.047281435626587154
YPLTFIQV	8	Unmodified	_YPLTFIQV_					0	0	0		nc|ENSG00000170266|P16278-2|GLB1;nc|ENSG00000170266|P16278-3|GLB1;nc|ENSG00000170266|P16278|GLB1;ENSG00000170266|ENST00000307363|GLB1;ENST00000473477.1_1_3:33063042-33065751:-|nuORF	nc|ENSG00000170266|P16278-2|GLB1	nc|ENSG00000170266|P16278-2|GLB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.7762451171875	2	490.776211	979.537869	0.25252	0.00012393	0.11914	5.847E-05	0.37166	0.0001824	490.7762193853048	80.296	0.4933	80.361	80.109	80.603	0.065094					36	18	3	0	0	0	0.28696	3	20847	20831;20847;20904		32.305	10.559	1	314620			59557	6437	34195	34196	72641;72642;72643	72642					0.047281435626587154
YPLTFIQV	8	Unmodified	_YPLTFIQV_					0	0	0		nc|ENSG00000170266|P16278-2|GLB1;nc|ENSG00000170266|P16278-3|GLB1;nc|ENSG00000170266|P16278|GLB1;ENSG00000170266|ENST00000307363|GLB1;ENST00000473477.1_1_3:33063042-33065751:-|nuORF	nc|ENSG00000170266|P16278-2|GLB1	nc|ENSG00000170266|P16278-2|GLB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.7764587402344	2	490.776211	979.537869	0.33305	0.00016345	-0.5562	-0.00027297	-0.22315	-0.00010951	490.7760941490767	80.472	0.56364	80.445	80.114	80.678	-0.026825					32	19	2	0	0	0	0.32038	2	20889	20889;20940		28.487	6.7402	1	323380			59558	6437	34195	34196	72644;72645	72644					0.047281435626587154
YPLTKNVKI	9	Unmodified	_YPLTKNVKI_					0	0	0			REV__ENST00000528362.1_1_11:47446139-47447800:-|nuORF	REV__ENST00000528362.1_1_11:47446139-47447800:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.29541015625	2	538.329142	1074.64373	0.5344	0.00028769	0.087311	4.7002E-05	0.62171	0.00033469	538.3289806547273	63.365	0.43817	63.365	63.143	63.581	0					32	15	3	0	0	0	0.1939	1	15665	15665		30.637	5.6456	1	433670	+		59559	17277	34196	34197	72646	72646					0.10939479408125408
YPLTKNVKI	9	Unmodified	_YPLTKNVKI_					0	0	0			REV__ENST00000528362.1_1_11:47446139-47447800:-|nuORF	REV__ENST00000528362.1_1_11:47446139-47447800:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.29541015625	2	538.329142	1074.64373	0.59796	0.0003219	-0.064026	-3.4467E-05	0.53393	0.00028743	538.3287625961217	63.394	0.45586	63.386	63.136	63.592	-0.0085526					30	16	3	0	0	0	0.1939	1	15648	15648		30.637	0	1	382510	+		59560	17277	34196	34197	72647	72647					0.10939479408125408
YPLTLKPF	8	Unmodified	_YPLTLKPF_					0	0	0		nc|ENSG00000137513|Q96I59-2|NARS2;ENSG00000137513|ENST00000281038|NARS2	nc|ENSG00000137513|Q96I59-2|NARS2	nc|ENSG00000137513|Q96I59-2|NARS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.34173583984375	2	489.786579	977.558604	-0.026934	-1.3192E-05	-3.6871	-0.0018059	-3.714	-0.0018191	489.7850189252493	65.408	0.16647	65.497	65.38	65.547	0.088882					7	5	2	0	0	0	0.34185	1	16307	16307		5.7604	0	1	93613			59561	4056	34197	34198	72648	72648					0.06892733942322593
YPLVESTESQI	11	Unmodified	_YPLVESTESQI_					0	0	0		nc|ENSG00000186510|P51800-2|CLCNKA;nc|ENSG00000186510|P51800-3|CLCNKA;ENSG00000186510|ENST00000331433|CLCNKA;nc|ENSG00000184908|P51801-2|CLCNKB;ENSG00000184908|ENST00000375679|CLCNKB	nc|ENSG00000186510|P51800-2|CLCNKA	nc|ENSG00000186510|P51800-2|CLCNKA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.9189453125	3	422.546842	1264.6187	0.004171	1.7625E-06	0.43005	0.00018172	0.43422	0.00018348	422.8815467935234	38.283	0.36872	38.381	38.122	38.491	0.097527					16	12	2	0	0	0	0.32863	1	7969	7969		11.518	1.3673	1	61285			59562	7624	34198	34199	72649	72649					-0.003026649757657651
YPLYTQITV	9	Unmodified	_YPLYTQITV_					0	0	0		nc|ENSG00000086062|P15291-2|B4GALT1;ENSG00000086062|ENST00000379731|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2979125976562	2	549.297507	1096.58046	0.37695	0.00020706	0.050328	2.7645E-05	0.42728	0.0002347	549.2975464002132	70.062	0.86713	70.062	69.566	70.434	0					114	31	5	0	0	0	0.0098873	1	17724	17724		79.596	39.647	1	1767600			59563	1275	34199	34200	72650	72650					0.03603493900232024
YPLYTQITV	9	Unmodified	_YPLYTQITV_					0	0	0		nc|ENSG00000086062|P15291-2|B4GALT1;ENSG00000086062|ENST00000379731|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2975463867188	2	549.297507	1096.58046	0.42551	0.00023373	-0.048278	-2.6519E-05	0.37723	0.00020721	549.2974709351391	69.989	0.86176	70.055	69.609	70.471	0.06604					113	30	5	0	0	0	0.075169	1	17777	17777		53.833	21.527	1	1633100			59564	1275	34199	34200	72651	72651					0.03603493900232024
YPLYTQITV	9	Unmodified	_YPLYTQITV_					0	0	0		nc|ENSG00000086062|P15291-2|B4GALT1;ENSG00000086062|ENST00000379731|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2977905273438	2	549.297507	1096.58046	0.45502	0.00024994	-0.037424	-2.0557E-05	0.4176	0.00022939	549.297502383224	70.087	0.68472	70.065	69.755	70.439	-0.022087					94	24	5	0	0	0	0.0098873	1	17716	17716		79.596	33.575	1	1753300			59565	1275	34199	34200	72652	72652					0.03603493900232024
YPMDLGGRNFL	11	Oxidation (M)	_YPM(Oxidation (M))DLGGRNFL_		YPM(1)DLGGRNFL		YPM(130)DLGGRNFL	0	0	1		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.816162109375	2	649.81353	1297.61251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.192	1	56.192	55.692	56.692	0								0	0	0	1.7598E-10	1	13473	13473		128.57	93.641	1				59566	4020	34200	34201	72653	72653		506			-0.024394616882773335
YPMDLGGRNFL	11	Oxidation (M)	_YPM(Oxidation (M))DLGGRNFL_		YPM(1)DLGGRNFL		YPM(150)DLGGRNFL	0	0	1		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8140869140625	2	649.81353	1297.61251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.215	1	56.215	55.715	56.715	0								0	0	0	5.202E-17	1	13480	13480		154.75	112.8	1				59567	4020	34200	34201	72654	72654		506			-0.024394616882773335
YPMDLGGRNFL	11	Oxidation (M)	_YPM(Oxidation (M))DLGGRNFL_		YPM(1)DLGGRNFL		YPM(130)DLGGRNFL	0	0	1		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8135375976562	2	649.81353	1297.61251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.366	1	56.366	55.866	56.866	0								0	0	0	1.7598E-10	1	13527	13527		128.57	97.305	1				59568	4020	34200	34201	72655	72655		506			-0.024394616882773335
YPMDLGGRNFL	11	Oxidation (M)	_YPM(Oxidation (M))DLGGRNFL_		YPM(1)DLGGRNFL		YPM(140)DLGGRNFL	0	0	1		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8143310546875	2	649.81353	1297.61251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.145	1	56.216	55.716	56.716	0.070885								0	0	0	1.1737E-16	1	13455	13455		143.21	105.04	1				59569	4020	34200	34201	72656	72656		506			-0.024394616882773335
YPMDLGGRNFL	11	Oxidation (M)	_YPM(Oxidation (M))DLGGRNFL_		YPM(1)DLGGRNFL		YPM(120)DLGGRNFL	0	0	1		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8140869140625	2	649.81353	1297.61251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.31	1	56.388	55.888	56.888	0.078674								0	0	0	3.3151E-10	1	13506	13506		117.84	91.569	1				59570	4020	34200	34201	72657	72657		506			-0.024394616882773335
YPMDLGGRNFL	11	Oxidation (M)	_YPM(Oxidation (M))DLGGRNFL_		YPM(1)DLGGRNFL		YPM(120)DLGGRNFL	0	0	1		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.813232421875	2	649.81353	1297.61251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.35	1	56.331	55.831	56.831	-0.019081								0	0	0	3.3151E-10	1	13515	13515		117.84	86.569	1				59571	4020	34200	34201	72658	72658		506			-0.024394616882773335
YPMDLGGRNFL	11	Oxidation (M)	_YPM(Oxidation (M))DLGGRNFL_		YPM(1)DLGGRNFL		YPM(150)DLGGRNFL	0	0	1		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8140258789062	2	649.81353	1297.61251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.502	1	56.483	55.983	56.983	-0.019081								0	0	0	9.4559E-17	1	13563	13563		147.24	114.45	1				59572	4020	34200	34201	72659	72659		506			-0.024394616882773335
YPMDLGGRNFL	11	Oxidation (M)	_YPM(Oxidation (M))DLGGRNFL_		YPM(1)DLGGRNFL		YPM(79)DLGGRNFL	0	0	1		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.813720703125	2	649.81353	1297.61251	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.667	1	56.648	56.148	57.148	-0.019081								0	0	0	0.0037063	1	13615	13615		79.427	59.012	1				59573	4020	34200	34201	72660	72660		506			-0.024394616882773335
YPMLIRTI	8	Oxidation (M)	_YPM(Oxidation (M))LIRTI_		YPM(1)LIRTI		YPM(120)LIRTI	0	0	1		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.78900146484375	2	511.788795	1021.56304	0.61134	0.00031288	-0.50554	-0.00025873	0.1058	5.415E-05	511.78866551785177	54.814	2.3487	54.814	53.358	55.707	0					191	86	3	0	0	0	0.0070655	3	13010	12759;12960;13010		123.45	75.105	1	3452300			59574	4132	34201	34202	72661;72662;72663	72663		530			0.05311875093593699
YPMLIRTI	8	Oxidation (M)	_YPM(Oxidation (M))LIRTI_		YPM(1)LIRTI		YPM(110)LIRTI	0	0	1		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.78887939453125	2	511.788795	1021.56304	0.51675	0.00026447	-0.43206	-0.00022112	0.084693	4.3345E-05	511.7887003615112	54.718	2.2554	54.782	53.464	55.719	0.063206					191	84	3	0	0	0	0.013309	5	12994	12713;12947;12994;13044;13092		111.29	56.648	1	2985100			59575	4132	34201	34202	72664;72665;72666;72667;72668	72666		530			0.05311875093593699
YPMLIRTI	8	Oxidation (M)	_YPM(Oxidation (M))LIRTI_		YPM(1)LIRTI		YPM(100)LIRTI	0	0	1		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.2772216796875	2	511.788795	1021.56304	0.49995	0.00025587	-0.37541	-0.00019213	0.12454	6.3736E-05	511.78872903330716	54.926	2.3031	54.91	53.371	55.674	-0.015923					179	84	3	0	0	0	0.021656	6	13102	12761;12812;13007;13058;13102;13147		99.799	59.842	1	3262300			59576	4132	34201	34202	72669;72670;72671;72672;72673;72674	72673		530			0.05311875093593699
YPMPFITTI	9	Oxidation (M)	_YPM(Oxidation (M))PFITTI_		YPM(1)PFITTI		YPM(42)PFITTI	0	0	1		nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;ENST00000577691.5_1_17:18387201-18397610:+|nuORF;nc|ENSG00000168961|O00182-4|LGALS9;ENST00000486774.1_1_17:25972868-25974145:+|nuORF	nc|ENSG00000168961|O00182-3|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.78076171875	2	549.780636	1097.54672	0.50151	0.00027572	-1.6525	-0.00090851	-1.151	-0.00063279	549.7802711497733	75.297	1.3495	75.349	74.865	76.215	0.052361					149	49	6	0	0	0	0.079066	1	19305	19305		42.095	11.458	1	2191400			59577	6317	34202	34203	72675	72675		744			0.001847491368152987
YPMPFITTI	9	Oxidation (M)	_YPM(Oxidation (M))PFITTI_		YPM(1)PFITTI		YPM(42)PFITTI	0	0	1		nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;ENST00000577691.5_1_17:18387201-18397610:+|nuORF;nc|ENSG00000168961|O00182-4|LGALS9;ENST00000486774.1_1_17:25972868-25974145:+|nuORF	nc|ENSG00000168961|O00182-3|LGALS9	nc|ENSG00000168961|O00182-3|LGALS9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.78076171875	2	549.780636	1097.54672	0.60135	0.00033061	-1.8276	-0.0010048	-1.2263	-0.00067417	549.7801875650802	75.396	1.3251	75.365	74.812	76.137	-0.031487					158	48	5	0	0	0	0.079066	2	19329	19329;19394		42.095	11.458	1	2134200			59578	6317	34202	34203	72676;72677	72676		744			0.001847491368152987
YPMYKKKQ	8	Unmodified	_YPMYKKKQ_					0	0	0			REV__nc|ENSG00000149485|O60427-2|FADS1	REV__nc|ENSG00000149485|O60427-2|FADS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7948608398438	2	543.294245	1084.57394	0.6824	0.00037074	-0.7542	-0.00040975	-0.071802	-3.901E-05	543.7949139497977	41.893	0.68502	41.984	41.807	42.492	0.090252					37	24	3	0	0	0	0.42758	1	9100	9100		13.508	13.508	1	586440	+		59579	16468	34203	34204	72678	72678					0.0350327746784842
YPNAKVELV	9	Unmodified	_YPNAKVELV_					0	0	0		ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.7899169921875	2	516.78985	1031.56515	0.55781	0.00028827	-0.41068	-0.00021224	0.14713	7.6034E-05	516.789583596652	45.4	1.6592	45.4	44.855	46.514	0					171	60	4	0	0	0	0.10059	1	10066	10066		38.176	6.9072	1	2451200			59580	3564	34204	34205	72679	72679					0.05062627103052364
YPNAKVELV	9	Unmodified	_YPNAKVELV_					0	0	0		ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	ENSG00000131435|ENST00000253754|PDLIM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7894287109375	2	516.78985	1031.56515	0.37758	0.00019513	-0.10727	-5.5437E-05	0.27031	0.00013969	516.7897767538768	45.314	1.402	45.379	44.798	46.2	0.065048					132	51	3	0	0	0	0.12279	1	10013	10013		34.932	2.1464	1	2933600			59581	3564	34204	34205	72680	72680					0.05062627103052364
YPNEPLQLE	9	Unmodified	_YPNEPLQLE_					0	0	0			REV__ENSG00000128849|ENST00000281282|CGNL1	REV__ENSG00000128849|ENST00000281282|CGNL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7840576171875	2	551.774396	1101.53424	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.08	1	52.08	51.58	52.58	0								0	0	0	0.18374	1	12201	12201		26.884	2.8631	1		+		59582	15390	34205	34206	72681	72681					-0.012465710018432219
YPNERFELL	9	Unmodified	_YPNERFELL_					0	0	0		ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.3193969726562	2	590.803488	1179.59242	0.40016	0.00023642	-0.12383	-7.316E-05	0.27633	0.00016326	590.8031764716158	58.857	0.72564	58.857	58.654	59.38	0					59	25	3	0	0	0	0.22701	1	14264	14264		23.79	23.79	1	444960			59583	5765	34206	34207	72682	72682					0.009811106434199246
YPNERFELL	9	Unmodified	_YPNERFELL_					0	0	0		ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	ENSG00000163960|ENST00000296328|UBXN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.319091796875	2	590.803488	1179.59242	0.46999	0.00027767	-0.007972	-4.7099E-06	0.46201	0.00027296	590.8032290453185	58.888	0.87971	58.874	58.608	59.488	-0.014267					62	30	3	0	0	0	0.21623	1	14279	14279		27.223	11.975	1	612280			59584	5765	34206	34207	72683	72683					0.009811106434199246
YPNKYESVI	9	Unmodified	_YPNKYESVI_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.7853393554688	2	556.784764	1111.55498	0.28335	0.00015777	-0.73488	-0.00040917	-0.45153	-0.0002514	556.7842203187568	43.412	1.5491	43.412	42.383	43.932	0					134	56	3	0	0	0	0.015924	3	9437	9437;9472;9524		70.332	39.695	1	2057500			59585	1556	34207	34208	72684;72685;72686	72684					0.0036601937779323634
YPNKYESVI	9	Unmodified	_YPNKYESVI_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.7852172851562	2	556.784764	1111.55498	0.36832	0.00020507	-0.60288	-0.00033567	-0.23456	-0.0001306	556.7844292314588	43.024	1.5089	43.109	42.153	43.662	0.085197					129	54	4	0	0	0	0.013404	1	9381	9381		74.2	39.798	1	1949900			59586	1556	34207	34208	72687	72687					0.0036601937779323634
YPNKYESVI	9	Unmodified	_YPNKYESVI_					0	0	0		nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7852172851562	2	556.784764	1111.55498	0.10239	5.7007E-05	-0.40947	-0.00022799	-0.30709	-0.00017098	556.784550397965	42.964	1.5719	43.055	42.067	43.639	0.091362					136	56	4	0	0	0	0.011693	2	9326	9326;9405		76.825	42.423	1	1897700			59587	1556	34207	34208	72688;72689	72688					0.0036601937779323634
YPNLQLREI	9	Unmodified	_YPNLQLREI_					0	0	0		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;nc|ENSG00000134644|Q14671-4|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.3193359375	2	573.319306	1144.62406	0.37836	0.00021692	-0.75278	-0.00043159	-0.37443	-0.00021467	573.3187337385531	56.667	0.9062	56.667	56.184	57.09	0					79	33	3	0	0	0	0.0021216	1	13628	13628		117.76	117.76	1	986690			59588	3799	34208	34209	72690	72690					0.05753103397364612
YPNLQLREI	9	Unmodified	_YPNLQLREI_					0	0	0		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;nc|ENSG00000134644|Q14671-4|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	573.319306	1144.62406	0.65888	0.00037775	-0.99969	-0.00057314	-0.34081	-0.00019539	573.3187065537635	56.597	0.89812	56.676	56.17	57.068	0.078671	-0.052727	-0.00010883	NaN	117.76	83	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1114400			59589	3799	34208	34209							0.05753103397364612
YPNLQLREI	9	Unmodified	_YPNLQLREI_					0	0	0		ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;nc|ENSG00000134644|Q14671-4|PUM1	ENSG00000134644|ENST00000426105|PUM1	ENSG00000134644|ENST00000426105|PUM1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	573.319306	1144.62406	0.69676	0.00039946	-0.93912	-0.00053841	-0.24236	-0.00013895	573.318613223443	56.861	0.89819	56.842	56.297	57.196	-0.019081	0.11355	-3.9376E-05	NaN	117.76	90	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1165100			59590	3799	34208	34209							0.05753103397364612
YPNSYFTGL	9	Unmodified	_YPNSYFTGL_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.272216796875	2	531.250557	1060.48656	0.48005	0.00025503	0.82765	0.00043969	1.3077	0.00069472	531.2511017308575	67.492	0.36805	67.492	67.193	67.561	0					18	12	2	0	0	0	0.23235	1	16957	16957		21.537	12.154	1	150880			59591	6050	34209	34210	72691	72691					-0.04126225202048772
YPNSYFTGL	9	Unmodified	_YPNSYFTGL_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2721557617188	2	531.250557	1060.48656	0.37104	0.00019711	0.96824	0.00051438	1.3393	0.00071149	531.2509897462252	67.333	0.36233	67.412	67.213	67.576	0.078041					21	12	2	0	0	0	0.22674	1	16895	16895		17.113	4.8722	1	139660			59592	6050	34209	34210	72692	72692					-0.04126225202048772
YPNYDQRLNL	10	Unmodified	_YPNYDQRLNL_					0	0	0		nc|ENSG00000259009|P0DV77|TPRX2;ENSG00000178928|ENST00000698655|TPRX1	nc|ENSG00000259009|P0DV77|TPRX2	nc|ENSG00000259009|P0DV77|TPRX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.25750732421875	3	432.55081	1294.6306	-0.088122	-3.8117E-05	0.11901	5.1476E-05	0.030883	1.3359E-05	432.8851941371939	41.343	0.38445	41.439	41.12	41.505	0.096622					19	13	2	0	0	0	0.31942	1	8907	8907		1.7423	0	1	738540			59593	7087	34210	34211	72693	72693					-0.004930034418975993
YPNYLHCIS	9	Unmodified	_YPNYLHCIS_					0	0	0		ENST00000556445.1_1_14:35487839-35488318:+|nuORF	ENST00000556445.1_1_14:35487839-35488318:+|nuORF	ENST00000556445.1_1_14:35487839-35488318:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.2576904296875	2	555.257859	1108.50117	0.11152	6.1925E-05	0.62198	0.00034536	0.73351	0.00040729	555.2581435250746	19.1	0.79107	19.1	18.864	19.655	0					42	27	2	0	0	0	0.33276	2	2113	2113;2142		3.9444	0.94915	1	63893			59594	11858	34211	34212	72694;72695	72694					-0.04874476325562682
YPPAPFMHI	9	Oxidation (M)	_YPPAPFM(Oxidation (M))HI_		YPPAPFM(1)HI		YPPAPFM(110)HI	0	0	1		ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF	ENSG00000143569|ENST00000428931|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7658081054688	2	544.76532	1087.51609	0.66001	0.00035955	-0.055877	-3.044E-05	0.60413	0.00032911	544.7654299733931	51.153	1.4372	51.153	50.686	52.123	0					146	53	4	0	0	0	0.00213	2	11870	11870;11921		109.15	80.667	1	2438900			59595	4531	34212	34213	72696;72697	72696		569			-0.02416984457545368
YPPAPFMHI	9	Oxidation (M)	_YPPAPFM(Oxidation (M))HI_		YPPAPFM(1)HI		YPPAPFM(130)HI	0	0	1		ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF	ENSG00000143569|ENST00000428931|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7655639648438	2	544.76532	1087.51609	0.67567	0.00036808	-0.015254	-8.31E-06	0.66042	0.00035977	544.7653807023428	51.138	1.4298	51.184	50.768	52.198	0.046574					129	52	4	0	0	0	0.00070004	3	11915	11863;11915;11959		126.6	98.113	1	2597200			59596	4531	34212	34213	72698;72699;72700	72699		569			-0.02416984457545368
YPPAPFMHI	9	Oxidation (M)	_YPPAPFM(Oxidation (M))HI_		YPPAPFM(1)HI		YPPAPFM(94)HI	0	0	1		ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-3|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF	ENSG00000143569|ENST00000428931|UBAP2L	ENSG00000143569|ENST00000428931|UBAP2L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7655639648438	2	544.76532	1087.51609	0.71241	0.0003881	-0.18819	-0.00010252	0.52423	0.00028558	544.7653487584538	51.17	1.4749	51.179	50.729	52.204	0.0095634					156	55	4	0	0	0	0.0040737	3	11924	11876;11924;11972		93.763	57.719	1	2328500			59597	4531	34212	34213	72701;72702;72703	72702		569			-0.02416984457545368
YPPEETKR	8	Unmodified	_YPPEETKR_					0	0	0		ENST00000520639.1_1_5:153873348-153873642:+|nuORF	ENST00000520639.1_1_5:153873348-153873642:+|nuORF	ENST00000520639.1_1_5:153873348-153873642:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2786560058594	2	510.261456	1018.50836	0.35651	0.00018191	0.060718	3.0982E-05	0.41723	0.00021289	510.26134236718514	20.011	0.48402	19.895	19.67	20.154	-0.11592					23	16	2	0	0	0	0.44734	1	2391	2391		6.7232	1.4263	1	30390			59598	11477	34213	34214	72704	72704					-0.00015420453485148755
YPPGAFVSV	9	Unmodified	_YPPGAFVSV_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	469.3063049316406	2	468.744911	935.475269	-0.1295	-6.0705E-05	1.0503	0.00049232	0.9208	0.00043162	468.7453683852598	61.391	0.89243	61.391	61.103	61.996	0					54	33	2	0	0	0	0.1659	1	15054	15054		36.044	16.787	1	286110			59599	4023	34214	34215	72705	72705					0.004949974944793212
YPPGAFVSV	9	Unmodified	_YPPGAFVSV_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.3072509765625	2	468.744911	935.475269	-0.19911	-9.3334E-05	0.71833	0.00033672	0.51922	0.00024338	468.74516425825215	61.122	1.2631	61.219	61.093	62.357	0.096989					60	46	2	0	0	0	0.1659	1	15057	15057		36.044	16.787	1	385450			59600	4023	34214	34215	72706	72706					0.004949974944793212
YPPGAFVSV	9	Unmodified	_YPPGAFVSV_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.30743408203125	2	468.744911	935.475269	-0.08531	-3.9989E-05	0.71452	0.00033493	0.62921	0.00029494	468.74513181516227	61.43	0.76405	61.42	61.243	62.008	-0.0094566					41	27	2	0	0	0	0.15464	1	15082	15082		38.151	15.003	1	312230			59601	4023	34214	34215	72707	72707					0.004949974944793212
YPPGVKEI	8	Unmodified	_YPPGVKEI_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B;ENST00000466078.1_1_13:33222909-33223050:+|nuORF;ENST00000506262.1_1_4:39978008-39978209:-|nuORF;PDS5B|p.R112Dfs*3|1|0.28|ENSG00000083642|chr13:32658259-32658259|A/-|frameshift_variant;nc|ENSG00000083642|Q9NTI5-4|PDS5B;ENST00000493653.1_1_13:33222909-33226198:+|nuORF;nc|ENSG00000083642|Q9NTI5-3|PDS5B;ENST00000498550.5_1_13:33222909-33262824:+|nuORF;nc|ENSG00000121892|Q29RF7-3|PDS5A;ENSG00000121892|ENST00000303538|PDS5A	nc|ENSG00000083642|Q9NTI5-2|PDS5B;nc|ENSG00000121892|Q29RF7-3|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.7527160644531	2	451.752736	901.490919	0.37398	0.00016895	-0.2834	-0.00012803	0.090583	4.0921E-05	451.7524963498993	36.558	2.5534	36.558	35.907	38.46	0					183	91	3	0	0	0	0.14707	2	7386	7386;7540		52.268	12.311	1	824450			59602	1225;3016	34215	34216	72708;72709	72708					0.03623284011530359
YPPGVKEI	8	Unmodified	_YPPGVKEI_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B;ENST00000466078.1_1_13:33222909-33223050:+|nuORF;ENST00000506262.1_1_4:39978008-39978209:-|nuORF;PDS5B|p.R112Dfs*3|1|0.28|ENSG00000083642|chr13:32658259-32658259|A/-|frameshift_variant;nc|ENSG00000083642|Q9NTI5-4|PDS5B;ENST00000493653.1_1_13:33222909-33226198:+|nuORF;nc|ENSG00000083642|Q9NTI5-3|PDS5B;ENST00000498550.5_1_13:33222909-33262824:+|nuORF;nc|ENSG00000121892|Q29RF7-3|PDS5A;ENSG00000121892|ENST00000303538|PDS5A	nc|ENSG00000083642|Q9NTI5-2|PDS5B;nc|ENSG00000121892|Q29RF7-3|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	451.75262451171875	2	451.752736	901.490919	0.29121	0.00013156	-0.10267	-4.638E-05	0.18855	8.5176E-05	451.7525267658261	36.589	2.1941	36.676	35.985	38.179	0.087406					187	79	3	0	0	0	0.1951	4	7447	7340;7447;7491;7686		43.858	11.553	1	816700			59603	1225;3016	34215	34216	72710;72711;72712;72713	72711					0.03623284011530359
YPPGVKEI	8	Unmodified	_YPPGVKEI_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B;ENST00000466078.1_1_13:33222909-33223050:+|nuORF;ENST00000506262.1_1_4:39978008-39978209:-|nuORF;PDS5B|p.R112Dfs*3|1|0.28|ENSG00000083642|chr13:32658259-32658259|A/-|frameshift_variant;nc|ENSG00000083642|Q9NTI5-4|PDS5B;ENST00000493653.1_1_13:33222909-33226198:+|nuORF;nc|ENSG00000083642|Q9NTI5-3|PDS5B;ENST00000498550.5_1_13:33222909-33262824:+|nuORF;nc|ENSG00000121892|Q29RF7-3|PDS5A;ENSG00000121892|ENST00000303538|PDS5A	nc|ENSG00000083642|Q9NTI5-2|PDS5B;nc|ENSG00000121892|Q29RF7-3|PDS5A	nc|ENSG00000121892|Q29RF7-3|PDS5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	451.7525329589844	2	451.752736	901.490919	0.49521	0.00022371	-0.37994	-0.00017164	0.11528	5.2076E-05	451.75243568735726	36.551	2.5816	36.644	35.851	38.432	0.093018					203	93	3	0	0	0	0.1951	2	7500	7337;7500		43.858	11.553	1	896960			59604	1225;3016	34215	34216	72714;72715	72715					0.03623284011530359
YPPHVQKV	8	Unmodified	_YPPHVQKV_					0	0	0		ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6	ENSG00000112701|ENST00000447266|SENP6	ENSG00000112701|ENST00000447266|SENP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.2420654296875	2	484.271627	966.528701	0.43311	0.00020974	-1.2193	-0.00059046	-0.78617	-0.00038072	484.2710002356473	21.093	1.7369	20.983	20.407	22.144	-0.11003					101	61	2	0	0	0	0.28969	1	2717	2717		36.044	12.896	1	131650			59605	2455	34216	34217	72716	72716					0.04409794996990968
YPPHVQKV	8	Unmodified	_YPPHVQKV_					0	0	0		ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6	ENSG00000112701|ENST00000447266|SENP6	ENSG00000112701|ENST00000447266|SENP6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.2420349121094	2	484.271627	966.528701	0.42427	0.00020546	-0.96331	-0.0004665	-0.53904	-0.00026104	484.27119649114155	20.749	1.5962	20.696	20.327	21.923	-0.05291					100	56	2	0	0	0	0.30503	1	2695	2695		30.225	12.09	1	133300			59606	2455	34216	34217	72717	72717					0.04409794996990968
YPPLAISL	8	Unmodified	_YPPLAISL_					0	0	0		CUX1|p.L930Afs*24|1|0.3|ENSG00000257923|chr7:102202077-102202078|-/C|frameshift_variant;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	CUX1|p.L930Afs*24|1|0.3|ENSG00000257923|chr7:102202077-102202078|-/C|frameshift_variant	CUX1|p.L930Afs*24|1|0.3|ENSG00000257923|chr7:102202077-102202078|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.25775146484375	2	437.257654	872.500755	-0.070641	-3.0888E-05	0.49737	0.00021748	0.42673	0.00018659	437.25783045842724	76.396	0.96272	76.396	76.021	76.983	0					66	34	3	0	0	0	0.065483	2	19666	19666;19711		70.865	21.196	1	600630			59607	251	34217	34218	72718;72719	72718					0.05940472016891363
YPPLAISL	8	Unmodified	_YPPLAISL_					0	0	0		CUX1|p.L930Afs*24|1|0.3|ENSG00000257923|chr7:102202077-102202078|-/C|frameshift_variant;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	CUX1|p.L930Afs*24|1|0.3|ENSG00000257923|chr7:102202077-102202078|-/C|frameshift_variant	CUX1|p.L930Afs*24|1|0.3|ENSG00000257923|chr7:102202077-102202078|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	437.25787353515625	2	437.257654	872.500755	-0.14431	-6.3102E-05	0.55397	0.00024223	0.40965	0.00017912	437.2578510170307	76.397	1.0125	76.451	76.02	77.033	0.053413					66	35	3	0	0	0	0.16192	2	19648	19648;19690		49.669	9.2203	1	542800			59608	251	34217	34218	72720;72721	72720					0.05940472016891363
YPPLAISL	8	Unmodified	_YPPLAISL_					0	0	0		CUX1|p.L930Afs*24|1|0.3|ENSG00000257923|chr7:102202077-102202078|-/C|frameshift_variant;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	CUX1|p.L930Afs*24|1|0.3|ENSG00000257923|chr7:102202077-102202078|-/C|frameshift_variant	CUX1|p.L930Afs*24|1|0.3|ENSG00000257923|chr7:102202077-102202078|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	437.25775146484375	2	437.257654	872.500755	0.14021	6.1306E-05	0.26587	0.00011625	0.40607	0.00017756	437.25776114429266	76.465	0.9951	76.433	76.077	77.072	-0.031487					68	36	3	0	0	0	0.12267	2	19721	19673;19721		56.541	16.093	1	577280			59609	251	34217	34218	72722;72723	72723					0.05940472016891363
YPPLRMPII	9	Unmodified	_YPPLRMPII_					0	0	0		ENSG00000099797|ENST00000215567|TECR;ENST00000598408.1_1_19:14675870-14676680:+|nuORF;nc|ENSG00000099797|Q9NZ01-2|TECR;ENST00000599101.5_1_19:14675534-14676680:+|nuORF;ENST00000593775.5_1_19:14675534-14676680:+|nuORF	ENSG00000099797|ENST00000215567|TECR	ENSG00000099797|ENST00000215567|TECR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7559204101562	2	550.320263	1098.62597	0.61822	0.00034022	3.3328	0.0018341	3.951	0.0021743	550.321599582526	41.97	0.24525	42.065	41.961	42.206	0.095085					11	8	2	0	0	0	0.25811	1	9084	9084		5.2307	0.90143	1	104070			59610	1494	34218	34219	72724	72724					0.08060440881649811
YPPNREIS	8	Unmodified	_YPPNREIS_					0	0	0		nc|ENSG00000151322|Q8IXF0-4|NPAS3;nc|ENSG00000151322|Q8IXF0-2|NPAS3;nc|ENSG00000151322|Q8IXF0-3|NPAS3;ENSG00000151322|ENST00000356141|NPAS3	nc|ENSG00000151322|Q8IXF0-4|NPAS3	nc|ENSG00000151322|Q8IXF0-4|NPAS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.81329345703125	2	488.248349	974.482145	0.57537	0.00028093	-0.53212	-0.00025981	0.043253	2.1118E-05	488.24588829431366	47.692	0.20967	47.735	47.561	47.771	0.04332					10	7	2	0	0	0	0.33245	1	10827	10827		13.508	2.684	1	208080			59611	4953	34219	34220	72725	72725					-0.0061168962496367385
YPPNTSKV	8	Unmodified	_YPPNTSKV_					0	0	0		ENSG00000105835|ENST00000222553|NAMPT;ENST00000489732.1_1_7:105917445-105925330:-|nuORF;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF	ENSG00000105835|ENST00000222553|NAMPT	ENSG00000105835|ENST00000222553|NAMPT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.23974609375	2	453.239993	904.465432	0.23864	0.00010816	-0.13359	-6.0549E-05	0.10505	4.7612E-05	453.24008699133583	21.704	1.8492	21.604	20.874	22.723	-0.10034					144	66	3	0	0	0	0.3474	1	2884	2884		25.399	6.1423	1	198350			59612	2028	34220	34221	72726	72726					0.00937809489096253
YPPPEVRNI	9	Unmodified	_YPPPEVRNI_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF;ENST00000496189.1_1_22:30748938-30752805:-|nuORF	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.7933349609375	2	542.792924	1083.57129	0.40026	0.00021726	0.60925	0.0003307	1.0095	0.00054795	542.7932183923228	40.794	1.8433	40.794	39.777	41.62	0					227	67	5	0	0	0	0.0028542	5	8713	8671;8713;8753;8796;8888		103.42	47.242	1	9445500			59613	1512	34221	34222	72727;72728;72729;72730;72731	72728					0.032851453345756454
YPPPEVRNI	9	Unmodified	_YPPPEVRNI_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF;ENST00000496189.1_1_22:30748938-30752805:-|nuORF	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.7930908203125	2	542.792924	1083.57129	0.65533	0.00035571	0.31256	0.00016966	0.9679	0.00052537	542.7930586944988	40.648	1.8508	40.74	39.69	41.541	0.09267					215	67	5	0	0	0	0.003317	3	8623	8623;8672;8720		99.755	24.826	1	11026000			59614	1512	34221	34222	72732;72733;72734	72732					0.032851453345756454
YPPPEVRNI	9	Unmodified	_YPPPEVRNI_					0	0	0		ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF;ENST00000496189.1_1_22:30748938-30752805:-|nuORF	ENSG00000099995|ENST00000215793|SF3A1	ENSG00000099995|ENST00000215793|SF3A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.7933349609375	2	542.792924	1083.57129	0.54742	0.00029713	0.27386	0.00014865	0.82127	0.00044578	542.7931210338024	40.545	1.3863	40.644	40.146	41.532	0.099407					97	50	2	0	0	0	0.0028542	3	8639	8639;8686;8784		103.42	38.398	1	12024000			59615	1512	34221	34222	72735;72736;72737	72735					0.032851453345756454
YPPRAKLV	8	Unmodified	_YPPRAKLV_					0	0	0		nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4	nc|ENSG00000136111|O60343-2|TBC1D4	nc|ENSG00000136111|O60343-2|TBC1D4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	472.29010009765625	2	472.28982	942.565087	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.831	1	25.831	25.331	26.331	0								0	0	0	0.35251	1	4169	4169		13.508	4.1604	1				59616	3942	34222	34223	72738	72738					0.09150671893689832
YPPRHFALS	9	Unmodified	_YPPRHFALS_					0	0	0			REV__nc|ENSG00000038358|Q6P2E9-2|EDC4	REV__nc|ENSG00000038358|Q6P2E9-2|EDC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.8086547851562	2	544.287808	1086.56106	0.7004	0.00038122	-1.3484	-0.00073393	-0.64802	-0.00035271	544.286830204024	51.34	0.43887	51.349	51.094	51.533	0.0095634					25	16	3	0	0	0	0.22596	1	11980	11980		15.847	0	1	274060	+		59617	13515	34223	34224	72739	72739					0.0212458239998341
YPPTLLEGP	9	Unmodified	_YPPTLLEGP_					0	0	0		ENSG00000212710|ENST00000391403|CTAGE1	ENSG00000212710|ENST00000391403|CTAGE1	ENSG00000212710|ENST00000391403|CTAGE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7626647949219	2	493.7633	985.512048	0.17235	8.5102E-05	-0.6074	-0.00029991	-0.43504	-0.00021481	493.76276453916677	67.195	0.63618	67.178	66.814	67.451	-0.016296					41	21	3	0	0	0	0.1669	1	16894	16894		28.487	6.7402	1	319340			59618	8330	34224	34225	72740	72740					0.0187124932037932
YPPVAGSTPS	10	Unmodified	_YPPVAGSTPS_					0	0	0			REV__nc|ENSG00000152102|A1KXE4-2|FAM168B	REV__nc|ENSG00000152102|A1KXE4-2|FAM168B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7822265625	2	488.242732	974.470912	0.31927	0.00015588	0.36903	0.00018017	0.6883	0.00033606	488.2424738610842	32.703	0.59977	32.758	32.469	33.069	0.054371					37	21	3	0	0	0	0.31051	1	6311	6311		16.942	0	1	229430	+		59619	16566	34225	34226	72741	72741					-0.01734511719087095
YPPVLRQAV	9	Unmodified	_YPPVLRQAV_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.8059692382812	2	521.805834	1041.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.005	1	45.073	44.573	45.573	0.068569								0	0	0	0.011479	1	10020	10020		78.149	36.055	1				59620	2237	34226	34227	72742	72742					0.07798039576823612
YPPWPGKIV	9	Unmodified	_YPPWPGKIV_					0	0	0		nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;ENST00000587875.1_1_16:4882642-4897278:-|nuORF	nc|ENSG00000140632|Q49A26-5|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.7979736328125	2	528.797478	1055.5804	0.49249	0.00026043	0.18046	9.5429E-05	0.67295	0.00035586	528.7975002640763	58.998	0.94414	58.998	58.468	59.412	0					57	32	2	0	0	0	0.062246	1	14397	14397		48.346	22.947	1	545300			59621	4325	34227	34228	72743	72743					0.05483538690896239
YPPWPGKIV	9	Unmodified	_YPPWPGKIV_					0	0	0		nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;ENST00000587875.1_1_16:4882642-4897278:-|nuORF	nc|ENSG00000140632|Q49A26-5|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.7435913085938	2	528.797478	1055.5804	0.45863	0.00024252	1.292	0.00068319	1.7506	0.00092572	528.7976182645709	58.801	0.84759	58.892	58.474	59.321	0.091301					82	29	4	0	0	0	0.11486	1	14268	14268		48.346	22.005	1	625400			59622	4325	34227	34228	72744	72744					0.05483538690896239
YPPWPGKIV	9	Unmodified	_YPPWPGKIV_					0	0	0		nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;ENST00000587875.1_1_16:4882642-4897278:-|nuORF	nc|ENSG00000140632|Q49A26-5|GLYR1	nc|ENSG00000140632|Q49A26-5|GLYR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.7975463867188	2	528.797478	1055.5804	0.58324	0.00030842	0.94622	0.00050036	1.5295	0.00080878	528.7973950178504	58.924	0.7867	58.91	58.583	59.37	-0.014267					65	27	3	0	0	0	0.088391	1	14306	14306		39.957	13.616	1	637570			59623	4325	34227	34228	72745	72745					0.05483538690896239
YPQDYQFYI	9	Unmodified	_YPQDYQFYI_					0	0	0		ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1	ENSG00000124783|ENST00000244763|SSR1	ENSG00000124783|ENST00000244763|SSR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.7822265625	2	618.782222	1235.54989	0.17759	0.00010989	0.15771	9.7591E-05	0.3353	0.00020748	618.7822516572314	73.995	1.2677	73.995	73.527	74.795	0					134	43	4	0	0	0	0.0098873	4	18938	18849;18895;18938;18985		79.596	41.622	1	3715100			59624	3180	34228	34229	72746;72747;72748;72749	72748					-0.0584628448480089
YPQDYQFYI	9	Unmodified	_YPQDYQFYI_					0	0	0		ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1	ENSG00000124783|ENST00000244763|SSR1	ENSG00000124783|ENST00000244763|SSR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.7822875976562	2	618.782222	1235.54989	0.05044	3.1211E-05	0.26081	0.00016139	0.31125	0.0001926	618.782320539466	73.949	1.1163	74.002	73.524	74.64	0.052361					124	38	4	0	0	0	0.015924	3	18895	18846;18895;18945		70.332	39.695	1	3776600			59625	3180	34228	34229	72750;72751;72752	72751					-0.0584628448480089
YPQDYQFYI	9	Unmodified	_YPQDYQFYI_					0	0	0		ENSG00000124783|ENST00000244763|SSR1;nc|ENSG00000124783|P43307-2|SSR1	ENSG00000124783|ENST00000244763|SSR1	ENSG00000124783|ENST00000244763|SSR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.7822875976562	2	618.782222	1235.54989	0.18802	0.00011634	0.091877	5.6852E-05	0.27989	0.00017319	618.7822269976591	74.024	1.2032	73.994	73.584	74.787	-0.030655					130	42	4	0	0	0	0.015924	4	18906	18858;18906;18952;18999		70.332	39.695	1	4417200			59626	3180	34228	34229	72753;72754;72755;72756	72754					-0.0584628448480089
YPQEVIPTF	9	Unmodified	_YPQEVIPTF_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.3184814453125	2	547.281857	1092.54916	0.62217	0.0003405	0.28694	0.00015704	0.90911	0.00049754	547.2821191267275	71.98	0.57015	71.953	71.63	72.2	-0.027275					34	20	2	0	0	0	0.22061	1	18290	18290		24.021	0	1	100290			59627	1910	34229	34230	72757	72757					0.006589208661353041
YPQIGWVEI	9	Unmodified	_YPQIGWVEI_					0	0	0		ENSG00000175066|ENST00000392993|GK5;ENST00000472759.5_1_3:141923150-141944297:-|nuORF;ENST00000466685.7_1_3:141923399-141944297:-|nuORF;ENST00000460544.5_1_3:141905034-141944237:-|nuORF;nc|ENSG00000175066|Q6ZS86-2|GK5	ENSG00000175066|ENST00000392993|GK5	ENSG00000175066|ENST00000392993|GK5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7887573242188	2	552.78985	1103.56515	0.44858	0.00024797	-1.6571	-0.00091602	-1.2085	-0.00066805	552.7888732638123	48.869	0.76864	48.869	48.582	49.351	0					60	27	3	0	0	0	0.15219	1	11242	11242		30.637	7.4881	1	1125400			59628	6836	34230	34231	72758	72758					0.01750627103047009
YPQIGWVEI	9	Unmodified	_YPQIGWVEI_					0	0	0		ENSG00000175066|ENST00000392993|GK5;ENST00000472759.5_1_3:141923150-141944297:-|nuORF;ENST00000466685.7_1_3:141923399-141944297:-|nuORF;ENST00000460544.5_1_3:141905034-141944237:-|nuORF;nc|ENSG00000175066|Q6ZS86-2|GK5	ENSG00000175066|ENST00000392993|GK5	ENSG00000175066|ENST00000392993|GK5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7892456054688	2	552.78985	1103.56515	0.25036	0.0001384	-1.6485	-0.00091128	-1.3981	-0.00077288	552.7890624604246	48.813	1.079	48.845	48.576	49.655	0.032043					76	38	3	0	0	0	0.18803	1	11200	11200		25.399	8.2864	1	1159300			59629	6836	34230	34231	72759	72759					0.01750627103047009
YPQIKQVI	8	Unmodified	_YPQIKQVI_					0	0	0			REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF	REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	494.7949523925781	2	494.794935	987.575317	0.40504	0.00020041	-0.30523	-0.00015103	0.099814	4.9388E-05	494.79479384817523	51.786	0.758	51.786	51.481	52.239	0					76	27	4	0	0	0	0.17761	1	12076	12076		46.921	3.1485	1	2549800	+		59630	16134	34231	34232	72760	72760					0.08103234828286077
YPQKIKAEL	9	Unmodified	_YPQKIKAEL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3190307617188	2	545.318774	1088.623	0.72979	0.00039797	0.18476	0.00010075	0.91455	0.00049872	545.3187736279358	32.502	0.84016	32.502	32.199	33.039	0					77	29	4	0	0	0	0.0045319	2	6215	6167;6215		90.135	50.178	1	1431600			59631	3655	34232	34233	72761;72762	72762					0.08222889028456848
YPQKIKAEL	9	Unmodified	_YPQKIKAEL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.319091796875	2	545.318774	1088.623	0.8881	0.0004843	0.092547	5.0468E-05	0.98065	0.00053477	545.3186661073377	32.384	0.98605	32.439	32.157	33.143	0.055309					82	35	4	0	0	0	0.0023895	2	6140	6140;6191		107.1	103.42	1	1668600			59632	3655	34232	34233	72763;72764	72763					0.08222889028456848
YPQKIKAEL	9	Unmodified	_YPQKIKAEL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.319091796875	2	545.318774	1088.623	0.62806	0.00034249	0.30433	0.00016595	0.93238	0.00050844	545.3188829455697	32.399	0.76709	32.453	32.136	32.903	0.054371					72	27	4	0	0	0	0.001957	2	6192	6145;6192		110.55	110.55	1	1553000			59633	3655	34232	34233	72765;72766	72766					0.08222889028456848
YPQPRRRK	8	Unmodified	_YPQPRRRK_					0	0	0			REV__ENST00000556683.1_1_14:51712110-51721234:+|nuORF	REV__ENST00000556683.1_1_14:51712110-51721234:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.7905883789062	2	550.825424	1099.63629	0.45054	0.00024817	-1.3391	-0.00073761	-0.88856	-0.00048944	550.8244651336367	29.062	0.3295	29.074	28.915	29.244	0.012266					16	11	2	0	0	0	0.34319	1	5132	5132		5.7604	0.028577	1	95934	+		59634	16014	34233	34234	72767	72767					0.09046184651083422
YPQSKLFSTIW	11	Unmodified	_YPQSKLFSTIW_					0	0	0			REV__nc|ENSG00000186205|Q5VT66-3|MTARC1	REV__nc|ENSG00000186205|Q5VT66-3|MTARC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	457.2430725097656	3	457.243206	1368.70779	0.18549	8.4816E-05	-0.081227	-3.7141E-05	0.10427	4.7676E-05	457.2430866389234	53.062	1.1189	53.062	52.63	53.749	0					127	41	4	0	0	0	0.44713	1	12529	12529		5.0475	2.4163	1	2792000	+		59635	18436	34234	34235	72768	72768					0.03818214774423723
YPRCSVNGK	9	Unmodified	_YPRCSVNGK_					0	0	0		nc|ENSG00000085185|Q5H9F3-1|BCORL1;ENSG00000085185|ENST00000540052|BCORL1;nc|ENSG00000085185|Q5H9F3-4|BCORL1;BCORL1|p.R1083Pfs*4|1|0.16|ENSG00000085185|chrX:130016019-130016020|-/CTTG|frameshift_variant	nc|ENSG00000085185|Q5H9F3-1|BCORL1	nc|ENSG00000085185|Q5H9F3-1|BCORL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.25634765625	2	512.255651	1022.49675	0.27842	0.00014262	0.46761	0.00023954	0.74603	0.00038216	512.2557712664017	41.68	1.5303	41.68	41.175	42.706	0					156	60	4	0	0	0	0.31038	1	9002	9002		7.2892	1.5288	1	11192000			59636	1253	34235	34236	72769	72769					-0.013599407484548465
YPREEINRV	9	Unmodified	_YPREEINRV_					0	0	0		ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.31201171875	2	588.312012	1174.60947	0.10101	5.9428E-05	0.262	0.00015414	0.36301	0.00021356	588.3122097899808	28.324	0.42508	28.324	28.153	28.578	0					24	14	2	0	0	0	0.2141	1	4936	4936		21.59	8.5477	1	215060			59637	6109	34236	34237	72770	72770					0.02915031249222011
YPREEINRV	9	Unmodified	_YPREEINRV_					0	0	0		ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3131103515625	2	588.312012	1174.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.551	1	28.551	28.051	29.051	0								0	0	0	0.23628	1	4995	4995		10.8	2.644	1				59638	6109	34236	34237	72771	72771					0.02915031249222011
YPREEINRV	9	Unmodified	_YPREEINRV_					0	0	0		ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.3118896484375	2	588.312012	1174.60947	0.13012	7.6551E-05	0.41652	0.00024504	0.54664	0.00032159	588.312121429115	28.389	0.48838	28.385	28.14	28.629	-0.0042572					33	17	3	0	0	0	0.19897	2	4936	4936;4985		23.801	16.192	1	208090			59639	6109	34236	34237	72772;72773	72772					0.02915031249222011
YPREEINRV	9	Unmodified	_YPREEINRV_					0	0	0		ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	ENSG00000166750|ENST00000299977|SLFN5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.312255859375	2	588.312012	1174.60947	0.056449	3.321E-05	0.49229	0.00028962	0.54874	0.00032283	588.3121987682495	28.357	0.50195	28.357	28.078	28.58	0.0004673					35	17	3	0	0	0	0.11813	2	4924	4924;4975		35.612	21.207	1	227270			59640	6109	34236	34237	72774;72775	72774					0.02915031249222011
YPREQINQL	9	Unmodified	_YPREQINQL_					0	0	0		ENSG00000130508|ENST00000252804|PXDN	ENSG00000130508|ENST00000252804|PXDN	ENSG00000130508|ENST00000252804|PXDN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.2717895507812	2	580.806562	1159.59857	-0.081738	-4.7474E-05	0.4484	0.00026043	0.36666	0.00021296	580.807012702614	39.319	0.60757	39.319	38.988	39.595	0					35	21	2	0	0	0	0.16853	1	8248	8248		38.176	38.176	1	518260			59641	3479	34237	34238	72776	72776					0.02515628874948561
YPREQINQL	9	Unmodified	_YPREQINQL_					0	0	0		ENSG00000130508|ENST00000252804|PXDN	ENSG00000130508|ENST00000252804|PXDN	ENSG00000130508|ENST00000252804|PXDN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.27197265625	2	580.806562	1159.59857	0.13178	7.6538E-05	0.68547	0.00039813	0.81725	0.00047467	580.8069523878814	39.143	0.82458	39.236	38.81	39.635	0.09267					45	29	2	0	0	0	0.12563	1	8207	8207		47.749	28.492	1	480730			59642	3479	34237	34238	72777	72777					0.02515628874948561
YPREQINQL	9	Unmodified	_YPREQINQL_					0	0	0		ENSG00000130508|ENST00000252804|PXDN	ENSG00000130508|ENST00000252804|PXDN	ENSG00000130508|ENST00000252804|PXDN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.2720947265625	2	580.806562	1159.59857	0.39716	0.00023067	-0.0091788	-5.3311E-06	0.38798	0.00022534	580.8066321123612	39.116	0.46448	39.216	39.017	39.481	0.099403					30	16	2	0	0	0	0.13643	1	8210	8210		45.7	45.7	1	545030			59643	3479	34237	34238	72778	72778					0.02515628874948561
YPRFPPIQSI	10	Unmodified	_YPRFPPIQSI_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000565092.6_1_16:1496634-1499128:-|nuORF;ENST00000563642.6_1_16:1496634-1499487:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.78662109375	2	609.337498	1216.66044	0.49039	0.00029882	-0.51434	-0.00031341	-0.023947	-1.4592E-05	609.3372362034065	63.805	1.6278	63.795	63.296	64.924	-0.0095291					141	58	3	0	0	0	0.19969	1	16026	16026		63.227	28.826	1	670720			59644	1822	34238	34239	72779	72779					0.06077980294094232
YPRFPPIQSI	10	Unmodified	_YPRFPPIQSI_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000565092.6_1_16:1496634-1499128:-|nuORF;ENST00000563642.6_1_16:1496634-1499487:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	609.337498	1216.66044	0.56875	0.00034656	-0.37341	-0.00022754	0.19534	0.00011903	609.3373192609557	63.877	1.5691	63.877	63.315	64.884	0	0.00038892	0.00021036	NaN	63.227	138	57	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608500			59645	1822	34238	34239							0.06077980294094232
YPRFPPIQSI	10	Unmodified	_YPRFPPIQSI_					0	0	0		nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000565092.6_1_16:1496634-1499128:-|nuORF;ENST00000563642.6_1_16:1496634-1499487:-|nuORF	nc|ENSG00000103249|P51798-2|CLCN7	nc|ENSG00000103249|P51798-2|CLCN7	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	609.337498	1216.66044	0.532	0.00032417	-0.68129	-0.00041513	-0.14929	-9.0965E-05	609.33721099267	63.865	1.5178	63.958	63.362	64.88	0.09288	0.081198	-0.00016484	NaN	63.227	135	54	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	536050			59646	1822	34238	34239							0.06077980294094232
YPRFTRGP	8	Unmodified	_YPRFTRGP_					0	0	0		ENSG00000178234|ENST00000430044|GALNT11;ENST00000482812.1_1_7:151722955-151800300:+|nuORF;nc|ENSG00000178234|Q8NCW6-2|GALNT11	ENSG00000178234|ENST00000430044|GALNT11	ENSG00000178234|ENST00000430044|GALNT11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.2671203613281	2	497.266876	992.519199	0.37365	0.0001858	0.13951	6.9372E-05	0.51316	0.00025518	497.26680001843187	37.474	0.70078	37.567	37.275	37.976	0.093018					60	25	3	0	0	0	0.34046	1	7685	7685		14.582	14.582	1	1002200			59647	7047	34239	34240	72780	72780					0.022640267114638846
YPRFTRGP	8	Unmodified	_YPRFTRGP_					0	0	0		ENSG00000178234|ENST00000430044|GALNT11;ENST00000482812.1_1_7:151722955-151800300:+|nuORF;nc|ENSG00000178234|Q8NCW6-2|GALNT11	ENSG00000178234|ENST00000430044|GALNT11	ENSG00000178234|ENST00000430044|GALNT11	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.266876	992.519199	0.45105	0.00022429	-0.0033597	-1.6707E-06	0.44769	0.00022262	497.2666895295503	37.495	0.82234	37.582	37.275	38.098	0.08741	0.011762	2.4392E-05	NaN	14.582	49	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	811260			59648	7047	34239	34240							0.022640267114638846
YPRGGSSEI	9	Unmodified	_YPRGGSSEI_					0	0	0		nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT	nc|ENSG00000042445|Q6NUM9-2|RETSAT	nc|ENSG00000042445|Q6NUM9-2|RETSAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2378845214844	2	483.237981	964.461409	0.17005	8.2175E-05	0.13396	6.4735E-05	0.30401	0.00014691	483.2377561228243	24.975	0.9556	24.975	24.548	25.504	0					119	32	5	0	0	0	0.012386	2	3915	3865;3915		75.761	22.185	1	1261400			59649	612	34240	34241	72781;72782	72782					-0.022242800046228695
YPRGGSSEI	9	Unmodified	_YPRGGSSEI_					0	0	0		nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT	nc|ENSG00000042445|Q6NUM9-2|RETSAT	nc|ENSG00000042445|Q6NUM9-2|RETSAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2379455566406	2	483.237981	964.461409	0.078938	3.8146E-05	0.49882	0.00024105	0.57776	0.0002792	483.2378682806236	25.073	0.84769	25.017	24.691	25.539	-0.055931					97	29	4	0	0	0	0.0037772	2	3951	3904;3951		96.111	42.535	1	1322900			59650	612	34240	34241	72783;72784	72784					-0.022242800046228695
YPRGGSSEI	9	Unmodified	_YPRGGSSEI_					0	0	0		nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT	nc|ENSG00000042445|Q6NUM9-2|RETSAT	nc|ENSG00000042445|Q6NUM9-2|RETSAT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2379150390625	2	483.237981	964.461409	-0.10531	-5.0892E-05	0.52505	0.00025372	0.41974	0.00020283	483.2378820783294	25.013	0.80763	24.982	24.627	25.434	-0.031408					97	27	5	0	0	0	0.0059482	2	3931	3881;3931		85.642	32.066	1	1225900			59651	612	34240	34241	72785;72786	72786					-0.022242800046228695
YPRGLVPRRL	10	Unmodified	_YPRGLVPRRL_					0	0	0		nc|ENSG00000164134|Q9BXJ9-4|NAA15;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.5870056152344	3	409.58753	1225.74076	-1.2485	-0.00051135	0.37273	0.00015266	-0.87573	-0.00035869	409.5876110874669	34.674	0.92028	34.674	34.306	35.227	0					77	32	4	0	0	0	0.28174	1	6876	6876		22.658	13.114	1	737130			59652	5798	34241	34242	72787	72787					0.13691886407787024
YPRGLVPRRL	10	Unmodified	_YPRGLVPRRL_					0	0	0		nc|ENSG00000164134|Q9BXJ9-4|NAA15;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5872802734375	3	409.58753	1225.74076	-1.1623	-0.00047608	0.27908	0.00011431	-0.88326	-0.00036177	409.587654724892	34.591	0.9124	34.666	34.158	35.071	0.075306					87	32	4	0	0	0	0.33327	1	6833	6833		15.739	5.5881	1	727980			59653	5798	34241	34242	72788	72788					0.13691886407787024
YPRGLVPRRL	10	Unmodified	_YPRGLVPRRL_					0	0	0		nc|ENSG00000164134|Q9BXJ9-4|NAA15;ENSG00000164134|ENST00000296543|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	nc|ENSG00000164134|Q9BXJ9-4|NAA15	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5870666503906	3	409.58753	1225.74076	-0.4737	-0.00019402	-0.57404	-0.00023512	-1.0477	-0.00042914	409.58730784704863	34.491	1.0028	34.569	34.164	35.167	0.077377					88	35	4	0	0	0	0.35267	1	6813	6813		12.175	2.4105	1	689620			59654	5798	34241	34242	72789	72789					0.13691886407787024
YPRGVRYILF	10	Unmodified	_YPRGVRYILF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	428.58001708984375	3	428.580152	1282.71863	0.034333	1.4714E-05	-0.15873	-6.803E-05	-0.1244	-5.3315E-05	428.580038341481	56.872	1.2147	56.872	56.528	57.743	0					139	44	4	0	0	0	0.33268	5	13764	13663;13716;13764;13811;13863		17.443	5.6676	1	3353700			59655	2735	34242	34243	72790;72791;72792;72793;72794	72792					0.08857661939350692
YPRGVRYILF	10	Unmodified	_YPRGVRYILF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.8683471679688	2	642.36659	1282.71863	0.49828	0.00032008	0.0084531	5.43E-06	0.50673	0.00032551	642.366478085023	56.851	0.88549	56.851	56.61	57.495	0					78	32	3	0	0	0	0.0042359	1	13673	13673		96.111	63.805	1	954400			59656	2735	34242	34243	72795	72795					0.08857661939350692
YPRGVRYILF	10	Unmodified	_YPRGVRYILF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.58001708984375	3	428.580152	1282.71863	0.030504	1.3073E-05	-0.10538	-4.5163E-05	-0.074875	-3.209E-05	428.5800406433818	56.798	1.024	56.877	56.513	57.538	0.078674					130	37	4	0	0	0	0.29978	5	13761	13611;13661;13711;13761;13834		16.566	7.0892	1	3294500			59657	2735	34242	34243	72796;72797;72798;72799;72800	72799					0.08857661939350692
YPRGVRYILF	10	Unmodified	_YPRGVRYILF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.3667602539062	2	642.36659	1282.71863	0.55942	0.00035935	-0.11831	-7.5997E-05	0.44111	0.00028336	642.366362234136	56.799	0.82203	56.878	56.575	57.397	0.078674					85	30	4	0	0	0	0.0036033	2	13683	13623;13683		99.799	67.493	1	1029600			59658	2735	34242	34243	72801;72802	72802					0.08857661939350692
YPRGVRYILF	10	Unmodified	_YPRGVRYILF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	428.58001708984375	3	428.580152	1282.71863	-0.018184	-7.7933E-06	-0.13741	-5.8893E-05	-0.1556	-6.6686E-05	428.580049715489	57.048	1.5156	57.029	56.7	58.216	-0.019081					165	55	4	0	0	0	0.33268	3	13845	13695;13845;13899		9.544	5.6676	1	3683700			59659	2735	34242	34243	72803;72804;72805	72804					0.08857661939350692
YPRGVRYILF	10	Unmodified	_YPRGVRYILF_					0	0	0		ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	ENSG00000116663|ENST00000376753|FBXO6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3668212890625	2	642.36659	1282.71863	0.48553	0.00031189	-0.19722	-0.00012669	0.28831	0.0001852	642.3663244828398	57.136	0.87827	57.117	56.809	57.688	-0.019081					87	31	4	0	0	0	0.013578	2	13771	13771;13831		78.728	46.423	1	1021600			59660	2735	34242	34243	72806;72807	72806					0.08857661939350692
YPRGYPVL	8	Unmodified	_YPRGYPVL_					0	0	0		ENSG00000008323|ENST00000684764|PLEKHG6	ENSG00000008323|ENST00000684764|PLEKHG6	ENSG00000008323|ENST00000684764|PLEKHG6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	483.2342834472656	2	482.766178	963.517802	0.41929	0.00020242	2.4907	0.0012024	2.91	0.0014048	482.76739449585835	44.588	1.4773	44.663	44.285	45.763	0.07505					91	54	3	0	0	0	0.32778	1	9828	9828		20.871	0	1	545420			59661	395	34243	34244	72808	72808					0.03458392622712836
YPRISVNNV	9	Unmodified	_YPRISVNNV_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.290771484375	2	531.290548	1060.56654	0.63155	0.00033554	-0.52024	-0.0002764	0.11131	5.9137E-05	531.2901472274133	45.109	1.2791	45.109	44.581	45.86	0					131	46	4	0	0	0	0.0019475	3	10102	10048;10102;10152		110.67	62.926	1	4880900			59662	2812	34244	34245	72809;72810;72811	72810					0.03868261191792044
YPRISVNNV	9	Unmodified	_YPRISVNNV_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2908325195312	2	531.290548	1060.56654	0.48573	0.00025806	-0.36531	-0.00019409	0.12042	6.3976E-05	531.290269697747	44.849	1.2482	44.918	44.408	45.656	0.068569					107	44	3	0	0	0	0.0098873	4	10045	9940;9990;9991;10045		79.596	39.647	1	5109700			59663	2812	34244	34245	72812;72813;72814;72815	72815					0.03868261191792044
YPRISVNNV	9	Unmodified	_YPRISVNNV_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.290771484375	2	531.290548	1060.56654	0.45456	0.0002415	-0.3531	-0.0001876	0.10146	5.3903E-05	531.2904497982321	44.015	0.69347	44.099	43.791	44.484	0.083992					76	25	4	0	0	0	0.059067	1	9784	9784		49.527	0	1	3924300			59664	2812	34244	34245	72816	72816					0.03868261191792044
YPRISVNNV	9	Unmodified	_YPRISVNNV_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2908325195312	2	531.290548	1060.56654	0.64151	0.00034083	-0.44833	-0.00023819	0.19318	0.00010264	531.2903028986217	44.88	1.2162	44.955	44.389	45.605	0.075047					119	44	3	0	0	0	0.0046246	3	9938	9938;9983;10028		89.401	51.25	1	5300600			59665	2812	34244	34245	72817;72818;72819	72817					0.03868261191792044
YPRISVNNVL	10	Unmodified	_YPRISVNNVL_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.8327026367188	2	587.83258	1173.65061	0.35415	0.00020818	-0.29096	-0.00017103	0.063195	3.7148E-05	587.832222675485	57.949	1.1818	57.949	57.116	58.298	0					106	42	4	0	0	0	0.018653	3	14040	13932;13983;14040		73.196	40.891	1	1440400			59666	2812	34245	34246	72820;72821;72822	72822					0.07072792288704477
YPRISVNNVL	10	Unmodified	_YPRISVNNVL_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.832275390625	2	587.83258	1173.65061	0.34026	0.00020002	-0.25997	-0.00015282	0.080295	4.72E-05	587.8322953090011	57.7	1.2888	57.786	57.047	58.336	0.085621					101	46	4	0	0	0	0.032393	3	13933	13879;13933;13982		62.869	39.079	1	1337400			59667	2812	34245	34246	72823;72824;72825	72824					0.07072792288704477
YPRISVNNVL	10	Unmodified	_YPRISVNNVL_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.83251953125	2	587.83258	1173.65061	0.42775	0.00025145	-0.51491	-0.00030268	-0.087152	-5.1231E-05	587.832191345085	57.983	1.2718	57.966	57.17	58.442	-0.017197					103	46	4	0	0	0	0.067258	3	14034	13982;14034;14087		55.235	30.244	1	1636700			59668	2812	34245	34246	72826;72827;72828	72827					0.07072792288704477
YPRLALAQL	9	Unmodified	_YPRLALAQL_					0	0	0		ENST00000546536.5_1_14:105957646-105963882:+|nuORF;nc|ENSG00000185347|Q86SX3-6|TEDC1;ENSG00000185347|ENST00000392523|TEDC1;nc|ENSG00000185347|Q86SX3-5|TEDC1;nc|ENSG00000185347|Q86SX3-3|TEDC1;nc|ENSG00000185347|Q86SX3-2|TEDC1	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.26953125	2	522.813659	1043.61277	0.56947	0.00029773	0.0066097	3.4556E-06	0.57608	0.00030118	522.8134549742322	45.091	0.71929	45.166	44.835	45.554	0.075047					66	26	4	0	0	0	0.25066	1	9961	9961		11.64	4.9171	1	742950			59669	7527	34246	34247	72829	72829					0.09270326093860604
YPRLGQMI	8	Oxidation (M)	_YPRLGQM(Oxidation (M))I_		YPRLGQM(1)I		YPRLGQM(51)I	0	0	1		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.26275634765625	2	497.262945	992.511337	0.11564	5.7506E-05	-0.093185	-4.6337E-05	0.02246	1.1168E-05	497.2628353622643	42.603	0.62415	42.603	42.306	42.93	0					33	22	2	0	0	0	0.15515	1	9287	9287		50.855	22.368	1	259450			59670	760	34247	34248	72830	72830		98			0.014781313996877543
YPRLGQMI	8	Oxidation (M)	_YPRLGQM(Oxidation (M))I_					0	0	1		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.262945	992.511337	0.45446	0.00022599	0.13008	6.4684E-05	0.58454	0.00029067	497.26254398741315	42.207	0.64187	42.292	42.034	42.676	0.085197	-0.088769	0.00036833	NaN	50.855	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265980			59671	760	34247	34248				98			0.014781313996877543
YPRLGQMI	8	Oxidation (M)	_YPRLGQM(Oxidation (M))I_					0	0	1		ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	ENSG00000061676|ENST00000361354|NCKAP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	497.262945	992.511337	0.45224	0.00022488	-0.85237	-0.00042385	-0.40013	-0.00019897	497.2624210759328	42.155	0.65008	42.246	41.957	42.607	0.091362	-0.13407	-0.00060874	NaN	50.855	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412770			59672	760	34247	34248				98			0.014781313996877543
YPRLKVLAF	9	Unmodified	_YPRLKVLAF_					0	0	0		nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000460904.1_1_2:27259408-27260666:+|nuORF	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8395385742188	2	553.839677	1105.6648	0.45314	0.00025097	-0.86938	-0.0004815	-0.41624	-0.00023053	553.839057537935	56.637	0.93187	56.637	56.184	57.116	0					79	34	4	0	0	0	0.044952	2	13665	13613;13665		54.774	24.549	1	1044100			59673	2906	34248	34249	72831;72832	72832					0.11619489507643266
YPRLKVLAF	9	Unmodified	_YPRLKVLAF_					0	0	0		nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000460904.1_1_2:27259408-27260666:+|nuORF	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.839677	1105.6648	0.63977	0.00035433	-1.249	-0.00069177	-0.60927	-0.00033744	553.8388893286512	56.557	0.84517	56.636	56.195	57.04	0.078674	-0.050444	-4.2742E-05	NaN	54.774	59	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1358700			59674	2906	34248	34249							0.11619489507643266
YPRLKVLAF	9	Unmodified	_YPRLKVLAF_					0	0	0		nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000460904.1_1_2:27259408-27260666:+|nuORF	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	nc|ENSG00000119777|Q6NUQ4-2|TMEM214	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	553.839677	1105.6648	0.74635	0.00041336	-1.4865	-0.00082326	-0.74011	-0.0004099	553.8388673946124	56.805	1.0702	56.786	56.213	57.283	-0.019081	0.099279	-0.00030572	NaN	54.774	79	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1463600			59675	2906	34248	34249							0.11619489507643266
YPRPSSGTL	9	Unmodified	_YPRPSSGTL_					0	0	0		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.7822265625	2	489.256174	976.497795	0.30703	0.00015022	0.11568	5.6599E-05	0.42271	0.00020682	489.2561379492188	32.962	1.1049	33.017	32.534	33.639	0.055309					58	39	2	0	0	0	0.19686	1	6311	6311		24.991	10.153	1	246380			59676	4004	34249	34250	72833	72833					0.00860596892096055
YPRPSSGTL	9	Unmodified	_YPRPSSGTL_					0	0	0		nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7822265625	2	489.256174	976.497795	0.25258	0.00012358	0.2904	0.00014208	0.54298	0.00026566	489.2563471549444	32.982	1.2048	33.036	32.553	33.757	0.054371					61	43	2	0	0	0	0.067563	1	6311	6311		49.554	22.671	1	290960			59677	4004	34249	34250	72834	72834					0.00860596892096055
YPRQLESLI	9	Unmodified	_YPRQLESLI_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.814697265625	2	559.813856	1117.61316	0.38422	0.00021509	-0.93605	-0.00052401	-0.55182	-0.00030892	559.8134735121815	58.493	1.1729	58.493	57.718	58.891	0					71	40	2	0	0	0	0.058995	2	14174	14128;14174		49.554	9.6046	1	1061600			59678	1910	34250	34251	72835;72836	72836					0.05905701023084475
YPRQLESLI	9	Unmodified	_YPRQLESLI_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.8147583007812	2	559.813856	1117.61316	0.37916	0.00021226	-0.62549	-0.00035016	-0.24633	-0.0001379	559.8134577639221	58.261	1.0728	58.347	57.598	58.671	0.085621					71	38	2	0	0	0	0.048637	1	14108	14108		53.404	9.6316	1	1168300			59679	1910	34250	34251	72837	72837					0.05905701023084475
YPRQLESLI	9	Unmodified	_YPRQLESLI_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.81494140625	2	559.813856	1117.61316	0.58469	0.00032732	-2.3501	-0.0013156	-1.7654	-0.00098832	559.812555411292	58.514	1.1193	58.499	57.77	58.889	-0.014271					65	40	2	0	0	0	0.064268	2	14172	14145;14172		47.594	5.869	1	1199600			59680	1910	34250	34251	72838;72839	72839					0.05905701023084475
YPRRPGSSP	9	Unmodified	_YPRRPGSSP_					0	0	0		ENSG00000182704|ENST00000333090|TSKU	ENSG00000182704|ENST00000333090|TSKU	ENSG00000182704|ENST00000333090|TSKU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7669982910156	2	508.76724	1015.51993	0.28142	0.00014318	-0.67765	-0.00034477	-0.39622	-0.00020159	508.7668001066981	17.022	0.9395	17.022	16.659	17.598	0					86	32	3	0	0	0	0.12642	1	1510	1510		34.402	3.7652	1	497270			59681	7312	34251	34252	72840	72840					0.01278821360517668
YPRRPGSSP	9	Unmodified	_YPRRPGSSP_					0	0	0		ENSG00000182704|ENST00000333090|TSKU	ENSG00000182704|ENST00000333090|TSKU	ENSG00000182704|ENST00000333090|TSKU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7669982910156	2	508.76724	1015.51993	0.082673	4.2061E-05	-0.2539	-0.00012918	-0.17123	-8.7116E-05	508.76702461517414	17.236	1.0635	17.119	16.72	17.784	-0.11739					90	37	3	0	0	0	0.05341	2	1574	1531;1574		51.63	27.609	1	437010			59682	7312	34251	34252	72841;72842	72842					0.01278821360517668
YPRRPGSSP	9	Unmodified	_YPRRPGSSP_					0	0	0		ENSG00000182704|ENST00000333090|TSKU	ENSG00000182704|ENST00000333090|TSKU	ENSG00000182704|ENST00000333090|TSKU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.76629638671875	2	508.76724	1015.51993	0.32913	0.00016745	-0.74527	-0.00037917	-0.41614	-0.00021172	508.7667065373276	17.075	0.91248	17.015	16.676	17.588	-0.060429					91	32	4	0	0	0	0.24467	1	1479	1479		17.113	0.96379	1	390180			59683	7312	34251	34252	72843	72843					0.01278821360517668
YPRRQAEP	8	Unmodified	_YPRRQAEP_					0	0	0			REV__ENSG00000196557|ENST00000348261|CACNA1H	REV__ENSG00000196557|ENST00000348261|CACNA1H	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7662658691406	2	508.76724	1015.51993	0.082673	4.2061E-05	-0.2539	-0.00012918	-0.17123	-8.7116E-05	508.76702461517414	17.236	1.0635	17.119	16.72	17.784	-0.11739					90	37	3	0	0	0	0.43758	2	1481	1481;1621		10.074	0.6908	1	437010	+		59684	18661	34252	34253	72844;72845	72844					0.012788213605062992
YPRSILTSL	9	Unmodified	_YPRSILTSL_					0	0	0		nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.3029174804688	2	525.303124	1048.5917	0.63126	0.0003316	-0.07181	-3.7722E-05	0.55945	0.00029388	525.3031189320924	57.174	1.297	57.174	56.582	57.88	0					96	47	3	0	0	0	0.05341	1	13756	13756		51.63	1.6968	1	904210			59685	3069	34253	34254	72846	72846					0.06934315994362805
YPRSILTSL	9	Unmodified	_YPRSILTSL_					0	0	0		nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.3032836914062	2	525.303124	1048.5917	0.49567	0.00026038	0.31798	0.00016703	0.81365	0.00042741	525.3032892450188	57.029	1.1295	57.108	56.628	57.758	0.078674					92	41	3	0	0	0	0.020233	1	13714	13714		63.961	16.212	1	926720			59686	3069	34253	34254	72847	72847					0.06934315994362805
YPRSILTSL	9	Unmodified	_YPRSILTSL_					0	0	0		nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	nc|ENSG00000122779|O15164-2|TRIM24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.302978515625	2	525.303124	1048.5917	0.40492	0.00021271	0.42216	0.00022176	0.82708	0.00043447	525.3033424914263	57.385	1.1658	57.367	56.811	57.977	-0.0172					69	42	2	0	0	0	0.015924	1	13854	13854		70.332	16.499	1	1088100			59687	3069	34253	34254	72848	72848					0.06934315994362805
YPRSPNPVLC	10	Unmodified	_YPRSPNPVLC_					0	0	0		ENST00000565782.1_1_16:18938215-18938455:+|nuORF	ENST00000565782.1_1_16:18938215-18938455:+|nuORF	ENST00000565782.1_1_16:18938215-18938455:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.2911987304688	2	573.292233	1144.56991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.43	1	112.44	111.94	112.94	0.0131								0	0	0	0.37664	1	29264	29264		3.5965	1.2938	1				59688	11971	34254	34255	72849	72849					0.0034118797416340385
YPSCFICN	8	Unmodified	_YPSCFICN_					0	0	0			REV__ENST00000581230.5_1_17:62496972-62497050:-|nuORF	REV__ENST00000581230.5_1_17:62496972-62497050:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.6943359375	2	473.693506	945.37246	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.887	1	25.887	25.387	26.387	0								0	0	0	0.37664	1	4186	4186		2.5775	0.73324	1		+		59689	22484	34255	34256	72850	72850					-0.10241154560151244
YPSCLPGISI	10	Unmodified	_YPSCLPGISI_					0	0	0		nc|ENSG00000122481|Q9Y3V2-3|RWDD3;nc|ENSG00000122481|Q9Y3V2-2|RWDD3;nc|ENSG00000122481|Q9Y3V2-4|RWDD3;ENST00000495272.5_1_1:95705425-95712423:+|nuORF;ENSG00000122481|ENST00000370202|RWDD3	nc|ENSG00000122481|Q9Y3V2-3|RWDD3	nc|ENSG00000122481|Q9Y3V2-3|RWDD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.8027954101562	2	525.270435	1048.52632	0.3537	0.00018579	-2.1334	-0.0011206	-1.7797	-0.00093482	525.2678869397547	42.725	0.13448	42.725	42.652	42.786	0					7	4	3	0	0	0	0.30586	1	9327	9327		13.906	0.86358	1	93350			59690	3043	34256	34257	72851	72851					0.0039957847700407
YPSFLPYF	8	Unmodified	_YPSFLPYF_					0	0	0		nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000146083|ENST00000274811|RNF44;ENST00000508478.1_1_5:175957081-175957609:-|nuORF	nc|ENSG00000146083|Q7L0R7-2|RNF44	nc|ENSG00000146083|Q7L0R7-2|RNF44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.2557983398438	2	517.255111	1032.49567	0.62622	0.00032392	1.4671	0.00075888	2.0934	0.0010828	517.2555540729272	47.914	1.256	47.914	47.38	48.636	0					81	44	3	0	0	0	0.39956	1	10900	10900		19.439	2.3524	1	3260800			59691	4689	34257	34258	72852	72852					-0.019278318457281785
YPSFLPYF	8	Unmodified	_YPSFLPYF_					0	0	0		nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000146083|ENST00000274811|RNF44;ENST00000508478.1_1_5:175957081-175957609:-|nuORF	nc|ENSG00000146083|Q7L0R7-2|RNF44	nc|ENSG00000146083|Q7L0R7-2|RNF44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	517.2559204101562	2	517.255111	1032.49567	0.48259	0.00024962	1.4172	0.00073304	1.8998	0.00098266	517.2556114855265	47.844	0.94976	47.888	47.48	48.43	0.04332					60	35	2	0	0	0	0.33916	1	10861	10861		26.341	10.573	1	3533400			59692	4689	34257	34258	72853	72853					-0.019278318457281785
YPSFLPYF	8	Unmodified	_YPSFLPYF_					0	0	0		nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000146083|ENST00000274811|RNF44;ENST00000508478.1_1_5:175957081-175957609:-|nuORF	nc|ENSG00000146083|Q7L0R7-2|RNF44	nc|ENSG00000146083|Q7L0R7-2|RNF44	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	517.255111	1032.49567	0.68913	0.00035645	1.3383	0.00069225	2.0274	0.0010487	517.2555147538036	47.85	1.0345	47.897	47.539	48.573	0.047523	-0.0022767	-6.8314E-05	NaN	26.341	75	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3350800			59693	4689	34257	34258							-0.019278318457281785
YPSKHPITV	9	Unmodified	_YPSKHPITV_					0	0	0		nc|ENSG00000170379|A6NFQ2-2|TCAF2;ENSG00000170379|ENST00000684770|TCAF2;ENSG00000283528|ENST00000636941|TCAF2C;nc|ENSG00000170379|A6NFQ2-3|TCAF2	nc|ENSG00000170379|A6NFQ2-2|TCAF2	nc|ENSG00000170379|A6NFQ2-2|TCAF2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.81640625	2	521.290017	1040.56548	0.61353	0.00031983	-1.2559	-0.00065468	-0.64235	-0.00033485	521.2892096922179	45.519	0.37298	45.579	45.361	45.734	0.059834					17	12	2	0	0	0	0.23783	1	10138	10138		18.135	4.6271	1	201520			59694	6448	34258	34259	72854	72854					0.046820468228816026
YPSLKSSQ	8	Unmodified	_YPSLKSSQ_					0	0	0		ENST00000413427.6_1_3:170102358-170108073:+|nuORF	ENST00000413427.6_1_3:170102358-170108073:+|nuORF	ENST00000413427.6_1_3:170102358-170108073:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	455.75872802734375	2	455.23745	908.460347	0.10831	4.9306E-05	0.23903	0.00010881	0.34733	0.00015812	455.2373219284307	24.776	0.53516	24.776	24.395	24.93	0					23	17	2	0	0	0	0.33661	1	3856	3856		13.906	0	1	51203			59695	10288	34259	34260	72855	72855					0.002455056264693667
YPSLPTMTV	9	Oxidation (M)	_YPSLPTM(Oxidation (M))TV_		YPSLPTM(1)TV		YPSLPTM(160)TV	0	0	1		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.7550048828125	2	512.754618	1023.49468	0.4266	0.00021874	0.24039	0.00012326	0.66699	0.000342	512.7546895553584	56.836	1.0961	56.836	56.37	57.466	0					120	40	5	0	0	0	5.2996E-06	3	13707	13655;13707;13755		156.16	78.006	1	2854200			59696	1358	34260	34261	72856;72857;72858	72857		168			-0.016124142769172067
YPSLPTMTV	9	Oxidation (M)	_YPSLPTM(Oxidation (M))TV_		YPSLPTM(1)TV		YPSLPTM(160)TV	0	0	1		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.7548217773438	2	512.754618	1023.49468	0.38683	0.00019835	0.43211	0.00022157	0.81895	0.00041992	512.7547351918623	56.786	0.9599	56.865	56.437	57.397	0.078671					108	35	4	0	0	0	5.2996E-06	5	13621	13591;13597;13621;13668;13718		156.16	78.006	1	3057600			59697	1358	34260	34261	72859;72860;72861;72862;72863	72861		168			-0.016124142769172067
YPSLPTMTV	9	Oxidation (M)	_YPSLPTM(Oxidation (M))TV_		YPSLPTM(1)TV		YPSLPTM(160)TV	0	0	1		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7550048828125	2	512.754618	1023.49468	0.57788	0.00029631	0.066854	3.428E-05	0.64474	0.00033059	512.7546030288829	56.88	1.1168	56.861	56.352	57.469	-0.019081					107	40	4	0	0	0	5.2996E-06	3	13714	13665;13714;13760		156.16	78.006	1	2777800			59698	1358	34260	34261	72864;72865;72866	72865		168			-0.016124142769172067
YPSLQNSF	8	Unmodified	_YPSLQNSF_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	478.24200439453125	2	478.229625	954.444697	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.341	1	61.341	60.841	61.841	0								0	0	0	0.35014	1	15063	15063		14.582	1.0738	1				59699	2517	34261	34262	72867	72867					-0.034347808905749844
YPSLRTRK	8	Unmodified	_YPSLRTRK_					0	0	0		ENST00000469100.5_1_1:33241299-33241524:-|nuORF	ENST00000469100.5_1_1:33241299-33241524:-|nuORF	ENST00000469100.5_1_1:33241299-33241524:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.2785949707031	2	510.801083	1019.58761	0.39256	0.00020052	0.16907	8.6361E-05	0.56163	0.00028688	510.8011803394361	20.175	0.31293	20.059	19.869	20.182	-0.11592					13	10	2	0	0	0	0.34319	1	2486	2486		5.7604	0	1	54832			59700	10849	34262	34263	72868	72868					0.07860271291315257
YPSPLVQRF	9	Unmodified	_YPSPLVQRF_					0	0	0		ENST00000229795.7_2_6:36076967-36077084:+|nuORF	ENST00000229795.7_2_6:36076967-36077084:+|nuORF	ENST00000229795.7_2_6:36076967-36077084:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.8300170898438	2	553.803291	1105.59203	0.35635	0.00019735	3.1511	0.0017451	3.5075	0.0019424	553.8041915527109	82.021	0.56262	82.021	81.699	82.262	0					53	17	4	0	0	0	0.22061	1	21381	21381		18.146	3.3081	1	420780			59701	8857	34263	34264	72869	72869					0.0434573571421879
YPSPLVQRF	9	Unmodified	_YPSPLVQRF_					0	0	0		ENST00000229795.7_2_6:36076967-36077084:+|nuORF	ENST00000229795.7_2_6:36076967-36077084:+|nuORF	ENST00000229795.7_2_6:36076967-36077084:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.8300170898438	2	553.803291	1105.59203	0.33757	0.00018695	2.9202	0.0016172	3.2578	0.0018042	553.8040176494712	82.017	0.77451	81.993	81.474	82.249	-0.02404					54	20	4	0	0	0	0.17242	1	21380	21380		36.127	12.106	1	454790			59702	8857	34263	34264	72870	72870					0.0434573571421879
YPSPTGVLI	9	Unmodified	_YPSPTGVLI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	473.7658386230469	2	473.765843	945.517133	0.14327	6.7876E-05	-0.027131	-1.2854E-05	0.11614	5.5022E-05	473.7657164589862	66.751	0.96725	66.751	66.482	67.45	0					84	33	4	0	0	0	0.1854	1	16730	16730		32.305	32.305	1	511920			59703	6781	34264	34265	72871	72871					0.04219553183008884
YPSPTGVLI	9	Unmodified	_YPSPTGVLI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	473.7657775878906	2	473.765843	945.517133	0.22169	0.00010503	0.40671	0.00019268	0.6284	0.00029771	473.76565912097	66.677	1.0019	66.76	66.386	67.387	0.083832					78	35	3	0	0	0	0.088391	2	16688	16688;16738		39.957	14.558	1	544970			59704	6781	34264	34265	72872;72873	72872					0.04219553183008884
YPSPTGVLI	9	Unmodified	_YPSPTGVLI_					0	0	0		ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	473.7658996582031	2	473.765843	945.517133	0.083644	3.9628E-05	0.45974	0.00021781	0.54339	0.00025744	473.76572380986295	66.81	0.93647	66.796	66.46	67.396	-0.013596					68	32	3	0	0	0	0.18803	2	16714	16714;16763		25.399	10.561	1	565620			59705	6781	34264	34265	72874;72875	72874					0.04219553183008884
YPSSGAKSL	9	Unmodified	_YPSSGAKSL_					0	0	0		ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	455.7586669921875	2	455.23745	908.460347	-0.12831	-5.8411E-05	-0.41145	-0.00018731	-0.53976	-0.00024572	455.23720726786684	24.801	0.67384	24.77	24.373	25.047	-0.03141					28	22	2	0	0	0	0.24289	1	3893	3893		13.042	2.2185	1	63908			59706	2769	34265	34266	72876	72876					0.002455056264693667
YPSSLMKAF	9	Unmodified	_YPSSLMKAF_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2833251953125	2	522.265153	1042.51575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.605	1	54.668	54.168	55.168	0.063202								0	0	0	0.21357	1	12980	12980		18.135	0	1				59707	8310	34266	34267	72877	72877					-0.0038040417739466648
YPTDLVRF	8	Unmodified	_YPTDLVRF_					0	0	0			REV__nc|ENSG00000007062|O43490-5|PROM1	REV__nc|ENSG00000007062|O43490-5|PROM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.792724609375	2	505.768917	1009.52328	0.39392	0.00019923	-0.65995	-0.00033378	-0.26602	-0.00013455	505.76873637105894	52.958	0.62458	52.958	52.686	53.311	0					35	22	2	0	0	0	0.33995	1	12545	12545		15.768	0	1	634860	+		59708	13380	34267	34268	72878	72878					0.018900714145161146
YPTENYTD	8	Unmodified	_YPTENYTD_					0	0	0			REV__ENST00000471105.5_1_1:201965436-201974841:+|nuORF	REV__ENST00000471105.5_1_1:201965436-201974841:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3033447265625	2	501.70618	1001.39781	0.43156	0.00021652	0.58745	0.00029473	1.019	0.00051124	501.7064223311528	72.254	0.2683	72.254	72.132	72.4	0					13	9	2	0	0	0	0.34319	1	18378	18378		5.7604	5.7604	1	62834	+		59709	21355	34268	34269	72879	72879					-0.10283685232388962
YPTETLTPF	9	Unmodified	_YPTETLTPF_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7843017578125	2	534.76604	1067.51753	0.6015	0.00032166	4.4497	0.0023795	5.0512	0.0027012	534.7680937554985	86.863	0.35556	86.858	86.723	87.078	-0.0056229					23	13	2	0	0	0	0.24581	1	22916	22916		16.942	0	1	158970	+		59710	18137	34269	34270	72880	72880					-0.013530718878200787
YPTISLHAL	9	Unmodified	_YPTISLHAL_					0	0	0		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	507.8206481933594	2	507.784567	1013.55458	0.016721	8.4904E-06	-0.29612	-0.00015037	-0.2794	-0.00014188	507.78429746258405	60.283	0.34858	60.283	60.065	60.413	0					17	12	2	0	0	0	0.17611	1	14698	14698		34.102	5.6156	1	199720			59711	1015	34270	34271	72881	72881					0.04834644448601466
YPTISLHAL	9	Unmodified	_YPTISLHAL_					0	0	0		ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	ENSG00000074201|ENST00000525428|CLNS1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	507.784567	1013.55458	-0.28961	-0.00014706	-0.14463	-7.3443E-05	-0.43425	-0.0002205	507.78426463326826	60.132	0.31709	60.227	60.105	60.422	0.095093	-0.028059	0.00010804	NaN	32.305	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380210			59712	1015	34270	34271							0.04834644448601466
YPTKSNPV	8	Unmodified	_YPTKSNPV_					0	0	0			REV__PCDH10|p.R60K|1|0.16|ENSG00000138650|chr4:133150319-133150319|G/A|missense_variant	REV__PCDH10|p.R60K|1|0.16|ENSG00000138650|chr4:133150319-133150319|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	453.23980712890625	2	453.239993	904.465432	0.12797	5.8003E-05	-0.1911	-8.6616E-05	-0.063129	-2.8613E-05	453.24016176463874	21.673	2.004	21.624	20.865	22.869	-0.049377					146	70	3	0	0	0	0.40115	1	2873	2873		19.257	0	1	166970	+		59713	23284	34271	34272	72882	72882					0.00937809489096253
YPTKVRLI	8	Unmodified	_YPTKVRLI_					0	0	0		ENST00000494981.1_1_14:105935406-105936549:+|nuORF;ENST00000481635.1_1_14:105935922-105936549:+|nuORF;ENST00000552286.5_1_14:105932689-105936549:+|nuORF;ENST00000481206.1_1_14:105935538-105936549:+|nuORF;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1	ENST00000494981.1_1_14:105935406-105936549:+|nuORF	ENST00000494981.1_1_14:105935406-105936549:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.27899169921875	2	495.310752	988.606951	0.46885	0.00023223	-0.34483	-0.0001708	0.12402	6.1427E-05	495.3105748476658	38.04	0.67025	38.04	37.707	38.377	0					37	23	2	0	0	0	0.28769	1	7903	7903		37.974	16.227	1	264250			59714	7338	34272	34273	72883	72883					0.11219227582239455
YPTKVRLI	8	Unmodified	_YPTKVRLI_					0	0	0		ENST00000494981.1_1_14:105935406-105936549:+|nuORF;ENST00000481635.1_1_14:105935922-105936549:+|nuORF;ENST00000552286.5_1_14:105932689-105936549:+|nuORF;ENST00000481206.1_1_14:105935538-105936549:+|nuORF;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1	ENST00000494981.1_1_14:105935406-105936549:+|nuORF	ENST00000494981.1_1_14:105935406-105936549:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	495.310752	988.606951	0.47359	0.00023458	-0.15767	-7.8097E-05	0.31592	0.00015648	495.31060372623534	37.969	0.62865	38.06	37.718	38.347	0.090881	0.046212	7.3531E-05	NaN	37.974	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212950			59715	7338	34272	34273							0.11219227582239455
YPTKVRLI	8	Unmodified	_YPTKVRLI_					0	0	0		ENST00000494981.1_1_14:105935406-105936549:+|nuORF;ENST00000481635.1_1_14:105935922-105936549:+|nuORF;ENST00000552286.5_1_14:105932689-105936549:+|nuORF;ENST00000481206.1_1_14:105935538-105936549:+|nuORF;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1	ENST00000494981.1_1_14:105935406-105936549:+|nuORF	ENST00000494981.1_1_14:105935406-105936549:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	495.310752	988.606951	0.32058	0.00015879	-0.17241	-8.5396E-05	0.14817	7.3392E-05	495.3106339659091	37.843	0.69384	37.941	37.654	38.348	0.097527	-0.07296	5.8934E-05	NaN	37.974	48	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282020			59716	7338	34272	34273							0.11219227582239455
YPTQGLTML	9	Unmodified	_YPTQGLTML_					0	0	0			REV__ENSG00000163785|ENST00000623711|RYK	REV__ENSG00000163785|ENST00000623711|RYK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.27880859375	2	512.26261	1022.51067	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.852	1	83.852	83.352	84.352	0								0	0	0	0.22377	1	21954	21954		14.838	0	1		+		59717	17088	34273	34274	72884	72884					0.0003129195997644274
YPTTFVMV	8	Oxidation (M)	_YPTTFVM(Oxidation (M))V_		YPTTFVM(1)V		YPTTFVM(78)V	0	0	1		ENST00000470936.1_1_3:69134198-69151212:+|nuORF;ENSG00000144746|ENST00000273258|ARL6IP5	ENST00000470936.1_1_3:69134198-69151212:+|nuORF	ENST00000470936.1_1_3:69134198-69151212:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.2388916015625	2	487.238604	972.462655	0.28201	0.0001374	0.034515	1.6817E-05	0.31652	0.00015422	487.2385510706032	63.03	0.86332	63.03	62.58	63.443	0					72	31	3	0	0	0	0.049524	2	15540	15540;15587		78.445	20.821	1	1143800			59718	4610	34274	34275	72885;72886	72885		583			-0.02467781960069715
YPTTFVMV	8	Oxidation (M)	_YPTTFVM(Oxidation (M))V_		YPTTFVM(1)V		YPTTFVM(78)V	0	0	1		ENST00000470936.1_1_3:69134198-69151212:+|nuORF;ENSG00000144746|ENST00000273258|ARL6IP5	ENST00000470936.1_1_3:69134198-69151212:+|nuORF	ENST00000470936.1_1_3:69134198-69151212:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.2386779785156	2	487.238604	972.462655	0.3388	0.00016507	0.058135	2.8326E-05	0.39693	0.0001934	487.23848005015583	62.854	0.73795	62.95	62.602	63.339	0.095726					63	26	3	0	0	0	0.049524	2	15513	15513;15560		78.445	24.869	1	1179000			59719	4610	34274	34275	72887;72888	72887		583			-0.02467781960069715
YPTTFVMV	8	Oxidation (M)	_YPTTFVM(Oxidation (M))V_		YPTTFVM(1)V		YPTTFVM(67)V	0	0	1		ENST00000470936.1_1_3:69134198-69151212:+|nuORF;ENSG00000144746|ENST00000273258|ARL6IP5	ENST00000470936.1_1_3:69134198-69151212:+|nuORF	ENST00000470936.1_1_3:69134198-69151212:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.2386779785156	2	487.238604	972.462655	0.26101	0.00012717	0.080425	3.9186E-05	0.34143	0.00016636	487.23853250709624	62.966	0.81329	62.958	62.621	63.435	-0.0085564					69	29	3	0	0	0	0.073545	1	15576	15576		67.035	20.114	1	1273600			59720	4610	34274	34275	72889	72889		583			-0.02467781960069715
YPTWFCPFH	9	Unmodified	_YPTWFCPFH_					0	0	0			REV__ENST00000281092.8_1_5:108203584-108203641:+|nuORF	REV__ENST00000281092.8_1_5:108203584-108203641:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.8023071289062	2	599.262945	1196.51134	0.57042	0.00034183	-1.6832	-0.0010087	-1.1128	-0.00066684	599.2611945757573	72.481	0.45831	72.481	72.267	72.726	0					29	16	3	0	0	0	0.24913	1	18445	18445		7.9102	0	1	141760	+		59721	19709	34275	34276	72890	72890					-0.07905868600323629
YPVEQMTTI	9	Oxidation (M)	_YPVEQM(Oxidation (M))TTI_		YPVEQM(1)TTI		YPVEQM(44)TTI	0	0	1		ENSG00000151692|ENST00000320892|RNF144A	ENSG00000151692|ENST00000320892|RNF144A	ENSG00000151692|ENST00000320892|RNF144A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2628173828125	2	549.262807	1096.51106	0.73387	0.00040309	-0.36582	-0.00020093	0.36805	0.00020216	549.2625845476748	45.667	0.7723	45.667	45.366	46.138	0					65	27	3	0	0	0	0.073988	2	10220	10220;10226		43.982	17.935	1	763700			59722	4976	34276	34277	72891;72892	72891		614			-0.03333333110822423
YPVEQMTTI	9	Oxidation (M)	_YPVEQM(Oxidation (M))TTI_		YPVEQM(1)TTI		YPVEQM(44)TTI	0	0	1		ENSG00000151692|ENST00000320892|RNF144A	ENSG00000151692|ENST00000320892|RNF144A	ENSG00000151692|ENST00000320892|RNF144A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2630004882812	2	549.262807	1096.51106	0.64915	0.00035655	-0.34584	-0.00018996	0.30331	0.0001666	549.2626277200359	45.559	0.81892	45.618	45.253	46.072	0.059834					64	28	3	0	0	0	0.073988	1	10208	10208		43.982	14.9	1	801400			59723	4976	34276	34277	72893	72893		614			-0.03333333110822423
YPVEQMTTI	9	Oxidation (M)	_YPVEQM(Oxidation (M))TTI_		YPVEQM(1)TTI		YPVEQM(48)TTI	0	0	1		ENSG00000151692|ENST00000320892|RNF144A	ENSG00000151692|ENST00000320892|RNF144A	ENSG00000151692|ENST00000320892|RNF144A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2630615234375	2	549.262807	1096.51106	0.60961	0.00033484	-0.15243	-8.3722E-05	0.45718	0.00025111	549.2626991789916	45.492	0.67659	45.557	45.274	45.951	0.065048					58	24	3	0	0	0	0.063898	1	10161	10161		47.732	23.711	1	821800			59724	4976	34276	34277	72894	72894		614			-0.03333333110822423
YPVEWAKF	8	Unmodified	_YPVEWAKF_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	520.2794189453125	2	520.26601	1038.51747	0.36498	0.00018989	-2.2116	-0.0011506	-1.8466	-0.00096071	520.2647799421729	47.059	0.21296	47.111	46.929	47.142	0.052574					11	7	2	0	0	0	0.35375	1	10632	10632		24.674	4.2203	1	246070			59725	1892	34277	34278	72895	72895					-0.0002502709717191465
YPVFRILTL	9	Unmodified	_YPVFRILTL_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3;nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1;ENST00000082468.11_1_6:26410172-26413917:+|nuORF;ENST00000508906.6_3_6:26376811-26377501:+|nuORF	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2433471679688	2	561.33951	1120.66447	0.68935	0.00038696	0.41081	0.00023061	1.1002	0.00061757	561.3396097833587	77.556	0.49078	77.525	77.213	77.704	-0.031334					31	17	2	0	0	0	0.11234	1	19956	19956		51.63	34.688	1	481810			59726	2390	34278	34279	72896	72896					0.10896069787804663
YPVIIHLI	8	Unmodified	_YPVIIHLI_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.302490234375	2	484.302396	966.590239	0.12112	5.8657E-05	-0.047822	-2.316E-05	0.073296	3.5497E-05	484.3022246974239	69.868	1.3104	69.868	69.229	70.54	0					102	47	3	0	0	0	0.027502	1	17678	17678		91.927	50.11	1	1234400			59727	838	34279	34280	72897	72897					0.10560726696280653
YPVIIHLI	8	Unmodified	_YPVIIHLI_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.3018493652344	2	484.302396	966.590239	0.12441	6.0252E-05	-0.080005	-3.8747E-05	0.044404	2.1505E-05	484.3022379197508	69.778	1.2954	69.844	69.34	70.635	0.066048					96	45	3	0	0	0	0.027502	2	17601	17601;17648		91.927	59.473	1	1303800			59728	838	34279	34280	72898;72899	72898					0.10560726696280653
YPVIIHLI	8	Unmodified	_YPVIIHLI_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.30218505859375	2	484.302396	966.590239	0.2348	0.00011371	-0.12224	-5.92E-05	0.11256	5.4514E-05	484.30220692520425	69.894	1.2297	69.872	69.239	70.469	-0.022087					99	44	3	0	0	0	0.027502	3	17608	17608;17650;17698		91.927	59.473	1	1195000			59729	838	34279	34280	72900;72901;72902	72900					0.10560726696280653
YPVIKHGRLY	10	Unmodified	_YPVIKHGRLY_					0	0	0		CON__Q28085	CON__Q28085	CON__Q28085	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.90789794921875	3	415.908269	1244.70298	0.13069	5.4356E-05	-0.29577	-0.00012301	-0.16508	-6.8657E-05	415.90809128753983	33.668	2.2487	33.668	32.251	34.5	0					207	80	4	0	0	0	0.34887	1	6559	6559		12.873	6.2491	1	1251100		+	59730	225	34280	34281	72903	72903					0.09041375422316378
YPVIKHGRLY	10	Unmodified	_YPVIKHGRLY_					0	0	0		CON__Q28085	CON__Q28085	CON__Q28085	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.9085388183594	3	415.908269	1244.70298	0.062388	2.5948E-05	-0.19428	-8.0802E-05	-0.13189	-5.4855E-05	415.90811279282394	33.466	2.033	33.533	32.319	34.352	0.066704					193	73	4	0	0	0	0.38522	1	6561	6561		6.1918	0.40842	1	1129000		+	59731	225	34280	34281	72904	72904					0.09041375422316378
YPVLKLFF	8	Unmodified	_YPVLKLFF_					0	0	0		ENST00000406434.5_1_2:16804274-16804388:-|nuORF	ENST00000406434.5_1_2:16804274-16804388:-|nuORF	ENST00000406434.5_1_2:16804274-16804388:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	513.8051147460938	2	513.804771	1025.59499	0.3087	0.00015861	1.0229	0.00052556	1.3316	0.00068417	513.8049969801025	86.947	0.79906	87.034	86.705	87.504	0.087097					83	34	4	0	0	0	0.45851	1	22924	22924		2.8892	0.58649	1	546460			59732	10222	34281	34282	72905	72905					0.08321610839016103
YPVMKYNPNV	10	Unmodified	_YPVMKYNPNV_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.5699768066406	3	408.874236	1223.60088	-0.22546	-9.2184E-05	-3.186	-0.0013027	-3.4114	-0.0013948	408.87320995795466	25.595	0.44542	25.564	25.319	25.764	-0.031408					24	15	2	0	0	0	0.32009	1	4118	4118		3.8763	3.1787	1	133530			59733	4482	34282	34283	72906	72906					-0.0019765871161325776
YPVNTRIYI	9	Unmodified	_YPVNTRIYI_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.29541015625	2	569.816399	1137.61824	0.38742	0.00022076	0.53493	0.00030481	0.92235	0.00052557	569.8167826344203	54.024	0.99715	54.008	53.525	54.522	-0.015923					68	35	3	0	0	0	0.21538	1	12738	12738		26.268	4.5215	1	997690			59734	1915	34283	34284	72907	72907					0.05494004885713366
YPVNTRIYI	9	Unmodified	_YPVNTRIYI_					0	0	0		nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	nc|ENSG00000104774|O00754-2|MAN2B1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	569.816399	1137.61824	0.47809	0.00027242	0.59902	0.00034133	1.0771	0.00061375	569.816753103706	53.812	0.7753	53.812	53.493	54.268	0	-0.098029	4.0526E-05	NaN	39.95	63	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	886290			59735	1915	34283	34284							0.05494004885713366
YPVTTIIAP	9	Unmodified	_YPVTTIIAP_					0	0	0		nc|ENSG00000091073|Q86UW9-2|DTX2;ENSG00000091073|ENST00000430490|DTX2	nc|ENSG00000091073|Q86UW9-2|DTX2	nc|ENSG00000091073|Q86UW9-2|DTX2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.79132080078125	2	487.781493	973.548434	0.40394	0.00019704	-0.036938	-1.8018E-05	0.367	0.00017902	487.7815534118248	71.448	0.44577	71.42	71.157	71.602	-0.027275					22	15	2	0	0	0	0.27532	1	18188	18188		12.532	0.89125	1	262030			59736	1394	34284	34285	72908	72908					0.0606012621709624
YPVTTIIAP	9	Unmodified	_YPVTTIIAP_					0	0	0		nc|ENSG00000091073|Q86UW9-2|DTX2;ENSG00000091073|ENST00000430490|DTX2	nc|ENSG00000091073|Q86UW9-2|DTX2	nc|ENSG00000091073|Q86UW9-2|DTX2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	487.781493	973.548434	0.32196	0.00015705	0.48281	0.00023551	0.80477	0.00039255	487.78172970506057	71.36	0.39275	71.36	71.157	71.55	0	-0.019155	0.00034057	NaN	12.532	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291580			59737	1394	34284	34285							0.0606012621709624
YPVTTIIAP	9	Unmodified	_YPVTTIIAP_					0	0	0		nc|ENSG00000091073|Q86UW9-2|DTX2;ENSG00000091073|ENST00000430490|DTX2	nc|ENSG00000091073|Q86UW9-2|DTX2	nc|ENSG00000091073|Q86UW9-2|DTX2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	487.781493	973.548434	0.40394	0.00019704	-0.036938	-1.8018E-05	0.367	0.00017902	487.7815534118248	71.448	0.44577	71.42	71.157	71.602	-0.027275	0.041102	-0.00016647	NaN	12.532	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262030			59738	1394	34284	34285							0.0606012621709624
YPVYKEFLSN	10	Unmodified	_YPVYKEFLSN_					0	0	0			REV__nc|ENSG00000197653|Q8IVF4|DNAH10	REV__nc|ENSG00000197653|Q8IVF4|DNAH10	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.3197631835938	2	630.318971	1258.62339	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.001	1	20.001	19.501	20.501	0								0	0	0	0.38189	1	2404	2404		1.1933	0	1		+		59739	18755	34285	34286	72909	72909					0.0044226395766600035
YPWAIVWGPT	10	Unmodified	_YPWAIVWGPT_					0	0	0		ENSG00000139200|ENST00000534837|PIANP;nc|ENSG00000139200|Q8IYJ0|PIANP	ENSG00000139200|ENST00000534837|PIANP	ENSG00000139200|ENST00000534837|PIANP	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.3072509765625	2	595.305667	1188.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.807	1	88.805	88.305	89.305	-0.0012283								0	0	0	0.36922	1	23462	23462		6.7232	0.51738	1				59740	4217	34286	34287	72910	72910					0.0100261985699035
YPWELSPN	8	Unmodified	_YPWELSPN_					0	0	0		nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	nc|ENSG00000154258|Q8IUA7-4|ABCA9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.76556396484375	2	503.23745	1004.46035	0.33167	0.00016691	-0.79254	-0.00039883	-0.46087	-0.00023193	503.23699708857015	23.387	0.38917	23.342	23.167	23.556	-0.044867					26	13	3	0	0	0	0.34337	1	3418	3418		5.2307	5.2307	1	76740			59741	5115	34287	34288	72911	72911					-0.041704943735112465
YPYASNFL	8	Unmodified	_YPYASNFL_					0	0	0		PRCP|p.L357Rfs*17|1|0.04|ENSG00000137509|chr11:82839276-82839277|CA/-|frameshift_variant;ENSG00000137509|ENST00000313010|PRCP;nc|ENSG00000137509|P42785-2|PRCP	PRCP|p.L357Rfs*17|1|0.04|ENSG00000137509|chr11:82839276-82839277|CA/-|frameshift_variant	PRCP|p.L357Rfs*17|1|0.04|ENSG00000137509|chr11:82839276-82839277|CA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.734619140625	2	487.734543	973.454533	0.31568	0.00015397	-0.00046779	-2.2816E-07	0.31521	0.00015374	487.7344372421428	66.787	0.85592	66.787	66.423	67.279	0					62	29	3	0	0	0	0.19197	2	16706	16706;16757		44.407	10.305	1	998010			59742	4055	34288	34289	72912;72913	72912					-0.03325592885198603
YPYASNFL	8	Unmodified	_YPYASNFL_					0	0	0		PRCP|p.L357Rfs*17|1|0.04|ENSG00000137509|chr11:82839276-82839277|CA/-|frameshift_variant;ENSG00000137509|ENST00000313010|PRCP;nc|ENSG00000137509|P42785-2|PRCP	PRCP|p.L357Rfs*17|1|0.04|ENSG00000137509|chr11:82839276-82839277|CA/-|frameshift_variant	PRCP|p.L357Rfs*17|1|0.04|ENSG00000137509|chr11:82839276-82839277|CA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7345275878906	2	487.734543	973.454533	0.29075	0.00014181	0.047555	2.3194E-05	0.3383	0.000165	487.7344370879786	66.649	0.85943	66.733	66.415	67.274	0.083832					71	30	3	0	0	0	0.13961	2	16656	16656;16704		53.576	11.481	1	919900			59743	4055	34288	34289	72914;72915	72914					-0.03325592885198603
YPYASNFL	8	Unmodified	_YPYASNFL_					0	0	0		PRCP|p.L357Rfs*17|1|0.04|ENSG00000137509|chr11:82839276-82839277|CA/-|frameshift_variant;ENSG00000137509|ENST00000313010|PRCP;nc|ENSG00000137509|P42785-2|PRCP	PRCP|p.L357Rfs*17|1|0.04|ENSG00000137509|chr11:82839276-82839277|CA/-|frameshift_variant	PRCP|p.L357Rfs*17|1|0.04|ENSG00000137509|chr11:82839276-82839277|CA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.73443603515625	2	487.734543	973.454533	0.16516	8.0553E-05	0.12076	5.8899E-05	0.28592	0.00013945	487.73449190670243	66.785	0.8855	66.772	66.379	67.265	-0.013588					70	31	3	0	0	0	0.13961	2	16702	16702;16753		53.576	11.481	1	1089800			59744	4055	34288	34289	72916;72917	72916					-0.03325592885198603
YPYDKPVQTV	10	Unmodified	_YPYDKPVQTV_					0	0	0		nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	nc|ENSG00000108582|O75976-2|CPD	nc|ENSG00000108582|O75976-2|CPD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.7592163085938	2	605.311146	1208.60774	0.42054	0.00025456	0.52394	0.00031715	0.94448	0.0005717	605.3117201325973	39.989	0.33804	40.088	39.922	40.26	0.099407					17	11	2	0	0	0	0.31433	1	8483	8483		12.241	2.1667	1	190440			59745	2196	34289	34290	72918	72918					0.011779774406022625
YPYEYEGGHI	10	Unmodified	_YPYEYEGGHI_					0	0	0		nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B;nc|ENSG00000164045|P30304-2|CDC25A;ENSG00000164045|ENST00000302506|CDC25A	nc|ENSG00000101224|P30305-3|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.268798828125	2	614.269478	1226.5244	0.44403	0.00027275	-0.79527	-0.00048851	-0.35125	-0.00021576	614.2693437396177	45.98	0.5799	45.98	45.666	46.246	0					44	20	3	0	0	0	0.00080269	1	10324	10324		123.45	103	1	668270			59746	1677	34290	34291	72919	72919					-0.07979759007207576
YPYEYEGGHI	10	Unmodified	_YPYEYEGGHI_					0	0	0		nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B;nc|ENSG00000164045|P30304-2|CDC25A;ENSG00000164045|ENST00000302506|CDC25A	nc|ENSG00000101224|P30305-3|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	614.269478	1226.5244	0.37597	0.00023095	0.17869	0.00010976	0.55466	0.00034071	614.2692596475428	45.588	0.48268	45.648	45.361	45.844	0.059834	-0.11309	0.00017348	NaN	123.45	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485700			59747	1677	34290	34291							-0.07979759007207576
YPYEYEGGHI	10	Unmodified	_YPYEYEGGHI_					0	0	0		nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B;nc|ENSG00000164045|P30304-2|CDC25A;ENSG00000164045|ENST00000302506|CDC25A	nc|ENSG00000101224|P30305-3|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	614.269478	1226.5244	0.39778	0.00024434	0.30724	0.00018873	0.70502	0.00043307	614.2693307725585	45.59	0.51405	45.655	45.358	45.872	0.065048	-0.1057	0.00033141	NaN	123.45	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	536650			59748	1677	34290	34291							-0.07979759007207576
YPYFHAFF	8	Unmodified	_YPYFHAFF_					0	0	0			REV__ENST00000529712.5_1_11:47690447-47736202:-|nuORF	REV__ENST00000529712.5_1_11:47690447-47736202:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.7642822265625	2	546.252903	1090.49125	0.5412	0.00029563	-0.57124	-0.00031204	-0.03004	-1.6409E-05	546.2523316106605	44.315	0.72655	44.315	44.013	44.739	0					38	26	2	0	0	0	0.34147	1	9910	9910		11.114	0.93107	1	377790	+		59749	17278	34291	34292	72920	72920					-0.05037296268619684
YPYFHAFF	8	Unmodified	_YPYFHAFF_					0	0	0			REV__ENST00000529712.5_1_11:47690447-47736202:-|nuORF	REV__ENST00000529712.5_1_11:47690447-47736202:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	546.252903	1090.49125	0.53971	0.00029482	-0.86855	-0.00047445	-0.32883	-0.00017963	546.2528924524521	43.948	0.42529	44.032	43.917	44.342	0.083996	-0.14195	-0.00014757	NaN	17.087	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	537510	+		59750	17278	34291	34292							-0.05037296268619684
YPYGDGNRSV	10	Unmodified	_YPYGDGNRSV_					0	0	0		ENST00000531211.1_1_8:70772071-70772629:-|nuORF;nc|ENSG00000156735|O95429-2|BAG4;ENSG00000156735|ENST00000287322|BAG4	ENST00000531211.1_1_8:70772071-70772629:-|nuORF	ENST00000531211.1_1_8:70772071-70772629:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.259033203125	2	564.259445	1126.50434	0.36086	0.00020362	-0.4878	-0.00027524	-0.12693	-7.1624E-05	564.2589543536257	30.254	0.63734	30.254	29.888	30.525	0					55	22	3	0	0	0	0.022191	1	5529	5529		69.338	47.592	1	364320			59751	5253	34292	34293	72921	72921					-0.05385509947177525
YPYGDGNRSV	10	Unmodified	_YPYGDGNRSV_					0	0	0		ENST00000531211.1_1_8:70772071-70772629:-|nuORF;nc|ENSG00000156735|O95429-2|BAG4;ENSG00000156735|ENST00000287322|BAG4	ENST00000531211.1_1_8:70772071-70772629:-|nuORF	ENST00000531211.1_1_8:70772071-70772629:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.2595825195312	2	564.259445	1126.50434	0.44136	0.00024904	-0.48962	-0.00027627	-0.048258	-2.723E-05	564.2589882659724	30.257	0.76405	30.285	29.901	30.665	0.027946					61	26	3	0	0	0	0.067258	1	5520	5520		55.235	37.088	1	490570			59752	5253	34292	34293	72922	72922					-0.05385509947177525
YPYGDGNRSV	10	Unmodified	_YPYGDGNRSV_					0	0	0		ENST00000531211.1_1_8:70772071-70772629:-|nuORF;nc|ENSG00000156735|O95429-2|BAG4;ENSG00000156735|ENST00000287322|BAG4	ENST00000531211.1_1_8:70772071-70772629:-|nuORF	ENST00000531211.1_1_8:70772071-70772629:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.2592163085938	2	564.259445	1126.50434	-0.040794	-2.3018E-05	0.12228	6.9E-05	0.081491	4.5982E-05	564.2592949198876	30.266	0.74433	30.293	29.894	30.638	0.027157					56	25	3	0	0	0	0.076018	1	5524	5524		53.317	31.57	1	399390			59753	5253	34292	34293	72923	72923					-0.05385509947177525
YPYGPVENKI	10	Unmodified	_YPYGPVENKI_					0	0	0		nc|ENSG00000171634|Q12830-4|BPTF;BPTF|p.A3017Efs*15|1|0.04|ENSG00000171634|chr17:67975903-67975904|-/AATATTCT|frameshift_variant;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;BPTF|p.I461Mfs*17|1|0.04|ENSG00000171634|chr17:67854708-67854709|-/GGTCATCATAC|frameshift_variant	nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830-4|BPTF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.7855834960938	2	590.305864	1178.59717	0.5523	0.00032602	-0.21899	-0.00012927	0.33331	0.00019675	590.3058464015797	44.709	0.56687	44.784	44.475	45.042	0.075047					35	20	2	0	0	0	0.25821	1	9854	9854		34.932	25.549	1	280700			59754	79	34293	34294	72924	72924					0.015019947861901528
YPYGSPPPLI	10	Unmodified	_YPYGSPPPLI_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7738037109375	2	552.292225	1102.5699	0.22417	0.00012381	0.025751	1.4222E-05	0.24992	0.00013803	552.2923499148765	69.375	1.5597	69.375	68.9	70.46	0					141	56	4	0	0	0	0.0098494	1	17507	17507		100.37	36.135	1	1426400			59755	4906	34294	34295	72925	72925					0.02271511245817237
YPYGSPPPLI	10	Unmodified	_YPYGSPPPLI_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2924194335938	2	552.292225	1102.5699	0.34764	0.000192	0.045514	2.5137E-05	0.39316	0.00021714	552.2923373061764	69.327	2.0473	69.393	68.478	70.526	0.066048					166	73	4	0	0	0	0.0019172	1	17529	17529		109.63	35.207	1	1439600			59756	4906	34294	34295	72926	72926					0.02271511245817237
YPYGSPPPLI	10	Unmodified	_YPYGSPPPLI_					0	0	0		nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	nc|ENSG00000150347|Q14865-2|ARID5B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.2924194335938	2	552.292225	1102.5699	0.26772	0.00014786	0.25049	0.00013834	0.51821	0.0002862	552.2924050880623	69.451	1.8748	69.429	68.649	70.524	-0.022087					178	67	4	0	0	0	0.0048001	2	17535	17535;17599		92.822	28.586	1	1372500			59757	4906	34294	34295	72927;72928	72927					0.02271511245817237
YPYHLSDIMV	10	Oxidation (M)	_YPYHLSDIM(Oxidation (M))V_		YPYHLSDIM(1)V		YPYHLSDIM(89)V	0	0	1		ENSG00000176853|ENST00000334705|FAM91A1;ENST00000454544.2_1_1:147907560-147907839:+|nuORF;FAM91A1|p.P188Lfs*20|1|0.29|ENSG00000176853|chr8:123779997-123779997|C/-|frameshift_variant	ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.3351440429688	2	627.297181	1252.57981	0.11315	7.0976E-05	0.31903	0.00020013	0.43217	0.0002711	627.2973839061935	58.762	0.62471	58.854	58.586	59.211	0.091301					48	21	3	0	0	0	0.01705	1	14253	14253		88.904	71.791	1	439040			59758	6946	34295	34296	72929	72929		781			-0.03637668811143158
YPYHYAPFL	9	Unmodified	_YPYHYAPFL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.7850952148438	2	585.784567	1169.55458	0.45526	0.00026668	0.29212	0.00017112	0.74738	0.0004378	585.784645195621	63.565	1.5854	63.565	63.195	64.781	0					209	57	5	0	0	0	0.00070004	6	15740	15691;15740;15789;15839;15891;16068		126.6	95.963	1	7184700			59759	2548	34296	34297	72930;72931;72932;72933;72934;72935	72931					-0.023413555514025575
YPYHYAPFL	9	Unmodified	_YPYHYAPFL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	585.78515625	2	585.784567	1169.55458	0.38991	0.0002284	0.32795	0.00019211	0.71786	0.00042051	585.7846703897449	63.494	1.9451	63.59	63.122	65.067	0.095726					207	70	5	0	0	0	0.00070004	5	15706	15655;15706;15757;15807;15860		126.6	101.2	1	7201700			59760	2548	34296	34297	72936;72937;72938;72939;72940	72937					-0.023413555514025575
YPYHYAPFL	9	Unmodified	_YPYHYAPFL_					0	0	0		ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF	ENSG00000114127|ENST00000392981|XRN1	ENSG00000114127|ENST00000392981|XRN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	585.7850952148438	2	585.784567	1169.55458	0.5235	0.00030666	0.10319	6.0448E-05	0.6267	0.00036711	585.7845766293091	63.65	1.8319	63.642	63.193	65.025	-0.0085526					201	66	5	0	0	0	0.00070004	6	15739	15677;15693;15739;15785;15837;15887		126.6	94.294	1	7721100			59761	2548	34296	34297	72941;72942;72943;72944;72945;72946	72943					-0.023413555514025575
YPYIPAHI	8	Unmodified	_YPYIPAHI_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	487.2608642578125	2	487.260728	972.506903	0.40339	0.00019656	-0.33355	-0.00016252	0.069845	3.4033E-05	487.2605908756514	55.163	0.45669	55.163	54.974	55.431	0					22	16	2	0	0	0	0.052153	1	13182	13182		77.196	41.152	1	446550			59762	6141	34297	34298	72947	72947					0.019549902484186532
YPYIPAHI	8	Unmodified	_YPYIPAHI_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7587585449219	2	487.260728	972.506903	0.44003	0.00021441	-0.2303	-0.00011222	0.20973	0.00010219	487.2606185650341	55.355	0.54082	55.336	55.025	55.565	-0.019081					24	19	2	0	0	0	0.29242	1	13264	13264		32.454	7.0543	1	360610			59763	6141	34297	34298	72948	72948					0.019549902484186532
YPYIPAHI	8	Unmodified	_YPYIPAHI_					0	0	0		ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	ENSG00000167005|ENST00000300291|NUDT21	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	487.260728	972.506903	0.53581	0.00026108	-0.44438	-0.00021653	0.091432	4.4551E-05	487.2607633012183	55.034	0.49757	55.097	54.941	55.438	0.063202	-0.10135	-0.00012263	NaN	77.196	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363740			59764	6141	34297	34298							0.019549902484186532
YPYLGPSTL	9	Unmodified	_YPYLGPSTL_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.7636413574219	2	505.7633	1009.51205	0.42465	0.00021477	0.74535	0.00037697	1.17	0.00059175	505.7633905568413	66.529	1.0094	66.529	66.183	67.193	0					91	35	4	0	0	0	0.00097449	3	16668	16623;16668;16716		123.1	84.945	1	1482700			59765	3986	34298	34299	72949;72950;72951	72950					0.00767249320404062
YPYLGPSTL	9	Unmodified	_YPYLGPSTL_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.763671875	2	505.7633	1009.51205	0.35683	0.00018047	0.75484	0.00038177	1.1117	0.00056224	505.7634372714386	66.438	1.2238	66.522	66.108	67.332	0.083832					104	43	4	0	0	0	0.0061338	3	16628	16583;16628;16678		85.357	55.132	1	1467200			59766	3986	34298	34299	72952;72953;72954	72953					0.00767249320404062
YPYLGPSTL	9	Unmodified	_YPYLGPSTL_					0	0	0		ENSG00000136631|ENST00000644510|VPS45;nc|ENSG00000136631|Q9NRW7-2|VPS45	ENSG00000136631|ENST00000644510|VPS45	ENSG00000136631|ENST00000644510|VPS45	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	505.7635803222656	2	505.7633	1009.51205	0.24386	0.00012333	0.76382	0.00038631	1.0077	0.00050965	505.76348063418953	66.522	1.0167	66.508	66.167	67.184	-0.013588					98	36	4	0	0	0	0.010938	3	16629	16629;16680;16730		77.984	49.497	1	1589800			59767	3986	34298	34299	72955;72956;72957	72955					0.00767249320404062
YPYLYKMYQ	9	Unmodified	_YPYLYKMYQ_					0	0	0			REV__ENSG00000205143|ENST00000378909|ARID3C	REV__ENSG00000205143|ENST00000378909|ARID3C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3867797851562	2	634.804642	1267.59473	0.34161	0.00021685	-0.21747	-0.00013805	0.12413	7.8801E-05	634.8044011505253	76.741	0.35918	76.794	76.592	76.951	0.053413					19	12	2	0	0	0	0.25811	1	19807	19807		5.2307	0	1	93407	+		59768	14908	34299	34300	72958	72958					-0.02836176943128521
YPYLYKMYQ	9	Unmodified	_YPYLYKMYQ_					0	0	0			REV__ENSG00000205143|ENST00000378909|ARID3C	REV__ENSG00000205143|ENST00000378909|ARID3C	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	634.804642	1267.59473	0.73552	0.00046691	-1.3233	-0.00084004	-0.58778	-0.00037313	634.8041405623535	76.787	0.33777	76.756	76.567	76.905	-0.031487	-0.019402	-0.0010005	NaN	5.2307	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110640	+		59769	14908	34299	34300							-0.02836176943128521
YPYNFSNL	8	Unmodified	_YPYNFSNL_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.81048583984375	2	509.23745	1016.46035	0.51897	0.00026428	-0.1404	-7.1499E-05	0.37856	0.00019278	509.23721158527206	65.637	0.63337	65.637	65.373	66.007	0					49	22	3	0	0	0	0.31768	1	16377	16377		27.629	9.4825	1	399970			59770	6783	34300	34301	72959	72959					-0.04722494373527297
YPYNFSNL	8	Unmodified	_YPYNFSNL_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.8103942871094	2	509.23745	1016.46035	0.13011	6.6259E-05	0.0035941	1.8303E-06	0.13371	6.8089E-05	509.23722291530487	65.52	0.54091	65.609	65.352	65.893	0.088882					42	19	3	0	0	0	0.28769	1	16341	16341		24.021	12.38	1	397700			59771	6783	34300	34301	72960	72960					-0.04722494373527297
YPYNFSNL	8	Unmodified	_YPYNFSNL_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.81024169921875	2	509.23745	1016.46035	0.40644	0.00020697	-0.30666	-0.00015616	0.099781	5.0812E-05	509.2371364870187	65.634	0.6003	65.623	65.372	65.972	-0.011337					43	21	3	0	0	0	0.30795	1	16389	16389		30.637	13.694	1	532480			59772	6783	34300	34301	72961	72961					-0.04722494373527297
YPYNQPKRNTI	11	Unmodified	_YPYNQPKRNTI_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.24542236328125	3	465.245609	1392.715	-0.26897	-0.00012514	0.1186	5.5176E-05	-0.15037	-6.9959E-05	465.2457947939474	28.166	0.77903	28.162	27.763	28.542	-0.0042572					64	27	4	0	0	0	0.33112	1	4865	4865		7.846	3.4399	1	287010			59773	511	34301	34302	72962	72962					0.034349473748534365
YPYNQPKRNTI	11	Unmodified	_YPYNQPKRNTI_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2458190917969	3	465.245609	1392.715	-0.17924	-8.3389E-05	-0.20395	-9.4888E-05	-0.38319	-0.00017828	465.2456369562913	28.061	0.76013	28.062	27.764	28.524	0.00046921					75	26	4	0	0	0	0.45822	1	4893	4893		3.5927	0	1	279480			59774	511	34301	34302	72963	72963					0.034349473748534365
YPYPFTVF	8	Unmodified	_YPYPFTVF_					0	0	0			REV__ENSG00000133706|ENST00000394434|LARS1	REV__ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.2557983398438	2	517.255111	1032.49567	0.68913	0.00035645	1.3383	0.00069225	2.0274	0.0010487	517.2555147538036	47.85	1.0345	47.897	47.539	48.573	0.047523					75	38	3	0	0	0	0.421	1	10891	10891		15.768	0	1	3350800	+		59775	15633	34302	34303	72964	72964					-0.01927831845705441
YPYPGELTM	9	Oxidation (M)	_YPYPGELTM(Oxidation (M))_		YPYPGELTM(1)		YPYPGELTM(74)	0	0	1		ENST00000481163.1_1_6:106546960-106547465:+|nuORF;nc|ENSG00000057657|O75626-3|PRDM1;nc|ENSG00000057657|O75626-2|PRDM1;ENSG00000057657|ENST00000369096|PRDM1	ENST00000481163.1_1_6:106546960-106547465:+|nuORF	ENST00000481163.1_1_6:106546960-106547465:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.27978515625	2	543.74425	1085.47395	0.71809	0.00039046	0.8192	0.00044544	1.5373	0.00083589	543.7446713446694	53.964	0.69998	53.964	53.622	54.322	0					59	25	3	0	0	0	0.037153	1	12784	12784		74.423	49.749	1	519050			59776	723	34303	34304	72965	72965		94			-0.06537004656593126
YPYPGELTM	9	Oxidation (M)	_YPYPGELTM(Oxidation (M))_		YPYPGELTM(1)		YPYPGELTM(74)	0	0	1		ENST00000481163.1_1_6:106546960-106547465:+|nuORF;nc|ENSG00000057657|O75626-3|PRDM1;nc|ENSG00000057657|O75626-2|PRDM1;ENSG00000057657|ENST00000369096|PRDM1	ENST00000481163.1_1_6:106546960-106547465:+|nuORF	ENST00000481163.1_1_6:106546960-106547465:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2797241210938	2	543.74425	1085.47395	0.58509	0.00031814	0.59842	0.00032539	1.1835	0.00064353	543.7446006246594	53.98	0.68191	54.036	53.638	54.32	0.056255					65	25	3	0	0	0	0.0088261	1	12798	12798		74.423	49.023	1	552760			59777	723	34303	34304	72966	72966		94			-0.06537004656593126
YPYPGELTM	9	Oxidation (M)	_YPYPGELTM(Oxidation (M))_		YPYPGELTM(1)		YPYPGELTM(55)	0	0	1		ENST00000481163.1_1_6:106546960-106547465:+|nuORF;nc|ENSG00000057657|O75626-3|PRDM1;nc|ENSG00000057657|O75626-2|PRDM1;ENSG00000057657|ENST00000369096|PRDM1	ENST00000481163.1_1_6:106546960-106547465:+|nuORF	ENST00000481163.1_1_6:106546960-106547465:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	543.2797241210938	2	543.74425	1085.47395	0.74442	0.00040478	0.73249	0.00039829	1.4769	0.00080306	543.74464201225	54.156	0.83695	54.14	53.738	54.575	-0.015923					65	29	3	0	0	0	0.065123	1	12832	12832		54.774	24.137	1	569720			59778	723	34303	34304	72967	72967		94			-0.06537004656593126
YPYPHTLYL	9	Unmodified	_YPYPHTLYL_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2872314453125	2	583.797675	1165.5808	0.13614	7.9479E-05	0.11239	6.5615E-05	0.24853	0.00014509	583.7977437994699	59.507	0.69249	59.602	59.215	59.907	0.095093					44	24	2	0	0	0	0.0041925	1	14516	14516		92.822	62.186	1	378670			59779	2715	34304	34305	72968	72968					0.0046291362009469594
YPYPHTLYL	9	Unmodified	_YPYPHTLYL_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	583.797675	1165.5808	0.11314	6.6052E-05	-0.012417	-7.2488E-06	0.10073	5.8803E-05	583.7977243546552	59.639	0.68106	59.639	59.241	59.922	0	-0.0062191	-5.0144E-05	NaN	92.822	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	628960			59780	2715	34304	34305							0.0046291362009469594
YPYPRAPVF	9	Unmodified	_YPYPRAPVF_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	555.7828979492188	2	555.292559	1108.57057	0.95734	0.0005316	-0.56692	-0.00031481	0.39042	0.00021679	555.2915812076673	56.115	0.45049	56.115	56.021	56.471	0					24	16	2	0	0	0	0.2322	1	13466	13466		20.454	3.5113	1	979870			59781	5063	34305	34306	72969	72969					0.020623506855145024
YPYPRAPVF	9	Unmodified	_YPYPRAPVF_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	555.292559	1108.57057	0.91932	0.00051049	1.1575	0.00064276	2.0768	0.0011533	555.7949642372015	56.355	0.48732	56.336	56.213	56.7	-0.019081	0.11063	0.00086605	NaN	42.095	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	609190			59782	5063	34305	34306							0.020623506855145024
YPYPYPHTL	9	Unmodified	_YPYPYPHTL_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7819213867188	2	575.782025	1149.5495	0.30956	0.00017824	0.17408	0.00010023	0.48364	0.00027847	575.7820211662992	51.558	1.181	51.558	51.03	52.211	0					120	43	4	0	0	0	1.474E-11	2	12067	11970;12067		198.52	160.37	1	1939200			59783	2715	34306	34307	72970;72971	72971					-0.019296594139859735
YPYPYPHTL	9	Unmodified	_YPYPYPHTL_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.781982421875	2	575.782025	1149.5495	0.34571	0.00019905	0.067369	3.879E-05	0.41308	0.00023784	575.7819262134811	51.478	1.0752	51.524	51.064	52.14	0.046577					106	39	4	0	0	0	1.474E-11	3	12060	11962;12008;12060		198.52	160.37	1	1892700			59784	2715	34306	34307	72972;72973;72974	72974					-0.019296594139859735
YPYPYPHTL	9	Unmodified	_YPYPYPHTL_					0	0	0		ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	ENSG00000116221|ENST00000360840|MRPL37	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7822265625	2	575.782025	1149.5495	0.18986	0.00010932	0.1573	9.0568E-05	0.34716	0.00019989	575.7821731856819	51.608	1.1095	51.617	51.094	52.204	0.0095634					107	41	3	0	0	0	1.474E-11	4	12036	11990;12036;12085;12140		198.52	154.66	1	1623300			59785	2715	34306	34307	72975;72976;72977;72978	72976					-0.019296594139859735
YPYQAPLV	8	Unmodified	_YPYQAPLV_					0	0	0		nc|ENSG00000163214|Q6P158-3|DHX57;ENST00000479345.2_1_2:39084268-39090579:-|nuORF;ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-2|DHX57;DHX57|p.A701Qfs*3|1|0.32|ENSG00000163214|chr2:38848332-38848332|C/-|frameshift_variant	nc|ENSG00000163214|Q6P158-3|DHX57;ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	475.7528076171875	2	475.752736	949.490919	0.10656	5.0696E-05	0.61916	0.00029457	0.72572	0.00034526	475.75288521042694	59.533	0.47308	59.628	59.382	59.855	0.095093					30	16	3	0	0	0	0.28861	1	14499	14499		32.117	12.678	1	502610			59786	5658;10991	34307	34308	72979	72979					0.014152840115116305
YPYQAPLV	8	Unmodified	_YPYQAPLV_					0	0	0		nc|ENSG00000163214|Q6P158-3|DHX57;ENST00000479345.2_1_2:39084268-39090579:-|nuORF;ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-2|DHX57;DHX57|p.A701Qfs*3|1|0.32|ENSG00000163214|chr2:38848332-38848332|C/-|frameshift_variant	nc|ENSG00000163214|Q6P158-3|DHX57;ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	475.7528991699219	2	475.752736	949.490919	0.35624	0.00016948	0.18404	8.756E-05	0.54028	0.00025704	475.75274980260866	59.666	0.47068	59.655	59.343	59.813	-0.011486					32	16	3	0	0	0	0.31934	1	14519	14519		18.135	0	1	507510			59787	5658;10991	34307	34308	72980	72980					0.014152840115116305
YPYTIINI	8	Unmodified	_YPYTIINI_					0	0	0		HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|221|1|anti-sense;HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|219|1|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|221|1|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|221|1|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.66168212890625	2	498.773668	995.532783	0.49035	0.00024457	-0.19385	-9.6687E-05	0.2965	0.00014789	498.77352651780524	76.553	0.51051	76.522	76.318	76.828	-0.031487					45	18	3	0	0	0	0.34167	1	19786	19786		11.64	0	1	376200			59788	12409	34308	34309	72981	72981					0.03483839700038516
YPYTIINI	8	Unmodified	_YPYTIINI_					0	0	0		HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|221|1|anti-sense;HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|219|1|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|221|1|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|221|1|anti-sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	498.773668	995.532783	0.33616	0.00016767	-0.27905	-0.00013919	0.057108	2.8484E-05	498.7734399989436	76.53	0.57461	76.53	76.283	76.858	0	0.0039348	-0.00018536	NaN	11.64	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373550			59789	12409	34308	34309							0.03483839700038516
YPYTIINI	8	Unmodified	_YPYTIINI_					0	0	0		HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|221|1|anti-sense;HERVK-int_dup102|chr7:4583489-4590929:-|1.365261944516419|0.4463608682754711|1.61|525.0|219|1|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|221|1|anti-sense	HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|221|1|anti-sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	498.773668	995.532783	0.1783	8.8933E-05	0.22872	0.00011408	0.40702	0.00020301	498.773723005654	76.472	0.63116	76.526	76.289	76.92	0.053413	-0.00013979	0.00032117	NaN	11.64	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424290			59790	12409	34308	34309							0.03483839700038516
YPYVAVML	8	Oxidation (M)	_YPYVAVM(Oxidation (M))L_		YPYVAVM(1)L		YPYVAVM(92)L	0	0	1		ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6;ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENSG00000188243|ENST00000682242|COMMD6	ENSG00000188243|ENST00000682242|COMMD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.2491760253906	2	486.248972	970.48339	0.25298	0.00012301	0.15647	7.6082E-05	0.40945	0.00019909	486.24911436948383	70.101	1.6168	70.101	69.511	71.128	0					185	58	5	0	0	0	0.027502	2	17745	17745;17789		91.927	50.11	1	8367500			59791	7738	34309	34310	72982;72983	72982		850			-0.0030319158039446847
YPYVAVML	8	Oxidation (M)	_YPYVAVM(Oxidation (M))L_		YPYVAVM(1)L		YPYVAVM(92)L	0	0	1		ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6;ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENSG00000188243|ENST00000682242|COMMD6	ENSG00000188243|ENST00000682242|COMMD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.2492370605469	2	486.248972	970.48339	0.23027	0.00011197	0.34038	0.00016551	0.57065	0.00027748	486.2491312019061	70.084	1.4133	70.15	69.579	70.993	0.06604					129	50	3	0	0	0	0.027502	3	17730	17684;17730;17772		91.927	55.461	1	8520400			59792	7738	34309	34310	72984;72985;72986	72985		850			-0.0030319158039446847
YPYVAVML	8	Oxidation (M)	_YPYVAVM(Oxidation (M))L_		YPYVAVM(1)L		YPYVAVM(92)L	0	0	1		ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6;ENST00000477377.1_1_13:76104099-76111947:-|nuORF	ENSG00000188243|ENST00000682242|COMMD6	ENSG00000188243|ENST00000682242|COMMD6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.249267578125	2	486.248972	970.48339	0.31535	0.00015334	0.27213	0.00013232	0.58748	0.00028566	486.24908910911165	70.175	1.2221	70.153	69.779	71.001	-0.022087					124	43	4	0	0	0	0.027502	2	17749	17749;17793		91.927	55.461	1	9131800			59793	7738	34309	34310	72987;72988	72987		850			-0.0030319158039446847
YPYVESETV	9	Unmodified	_YPYVESETV_					0	0	0		ENSG00000176095|ENST00000321599|IP6K1	ENSG00000176095|ENST00000321599|IP6K1	ENSG00000176095|ENST00000321599|IP6K1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3091430664062	2	543.75313	1085.49171	0.8388	0.0004561	0.59288	0.00032238	1.4317	0.00077848	543.7528645992173	50.854	0.46249	50.9	50.656	51.118	0.046574					23	16	2	0	0	0	0.21905	1	11858	11858		23.148	0	1	125210			59794	6902	34310	34311	72989	72989					-0.04761966130081419
YPYVGILHV	9	Unmodified	_YPYVGILHV_					0	0	0		ENSG00000161904|ENST00000293760|LEMD2;nc|ENSG00000161904|Q8NC56-2|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.7950439453125	2	530.794935	1059.57532	0.36147	0.00019187	0.035254	1.8713E-05	0.39673	0.00021058	530.7952111558322	65.072	2.2372	65.072	64.079	66.317	0					190	81	4	0	0	0	0.00070004	1	16204	16204		126.6	90.556	1	4071400			59795	5534	34311	34312	72990	72990					0.047912348282807216
YPYVGILHV	9	Unmodified	_YPYVGILHV_					0	0	0		ENSG00000161904|ENST00000293760|LEMD2;nc|ENSG00000161904|Q8NC56-2|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.794921875	2	530.794935	1059.57532	0.29781	0.00015808	0.11149	5.9179E-05	0.4093	0.00021726	530.7952006101393	65	2.386	65.089	64.087	66.472	0.088882					181	87	5	0	0	0	0.00070004	2	16148	16148;16193		126.6	82.193	1	4083200			59796	5534	34311	34312	72991;72992	72991					0.047912348282807216
YPYVGILHV	9	Unmodified	_YPYVGILHV_					0	0	0		ENSG00000161904|ENST00000293760|LEMD2;nc|ENSG00000161904|Q8NC56-2|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.795166015625	2	530.794935	1059.57532	0.28392	0.00015071	0.042478	2.2547E-05	0.3264	0.00017325	530.7951195891123	65.075	1.7037	65.064	64.413	66.117	-0.011337					170	61	4	0	0	0	0.00070004	2	16180	16180;16226		126.6	90.556	1	4711800			59797	5534	34311	34312	72993;72994	72993					0.047912348282807216
YPYYGKLL	8	Unmodified	_YPYYGKLL_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	508.7762451171875	2	508.776211	1015.53787	0.67706	0.00034447	0.09328	4.7459E-05	0.77034	0.00039193	508.77617283908086	54.947	0.91123	54.947	54.462	55.374	0					78	33	3	0	0	0	0.1971	1	13062	13062		60.39	38.643	1	1447100			59798	4482	34312	34313	72995	72995					0.030721435626674065
YPYYGKLL	8	Unmodified	_YPYYGKLL_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	508.7763977050781	2	508.776211	1015.53787	0.58124	0.00029572	0.033591	1.709E-05	0.61483	0.00031281	508.77610264525134	54.857	0.75361	54.92	54.483	55.237	0.063202					72	27	3	0	0	0	0.10069	2	13040	13040;13096		60.39	30.165	1	2153300			59799	4482	34312	34313	72996;72997	72996					0.030721435626674065
YPYYGKLL	8	Unmodified	_YPYYGKLL_					0	0	0		nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	nc|ENSG00000143153|P05026-2|ATP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	508.7765197753906	2	508.776211	1015.53787	0.53756	0.0002735	0.11344	5.7716E-05	0.651	0.00033121	508.77619231227476	55.114	1.0179	55.095	54.628	55.646	-0.019077					87	37	4	0	0	0	0.065797	3	13165	13117;13165;13223		70.716	34.671	1	2426800			59800	4482	34312	34313	72998;72999;73000	72999					0.030721435626674065
YQDDISNLTF	10	Unmodified	_YQDDISNLTF_					0	0	0			REV__nc|ENSG00000131044|Q3SXZ7-3|TTLL9	REV__nc|ENSG00000131044|Q3SXZ7-3|TTLL9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.8563232421875	3	405.855787	1214.54553	-0.01258	-5.1058E-06	1.2838	0.00052103	1.2712	0.00051592	405.85612978982545	52.794	0.62624	52.794	52.494	53.121	0					76	22	5	0	0	0	0.30872	1	12412	12412		12.856	2.5407	1	600810	+		59801	22986	34313	34314	73001	73001					-0.05315793698400739
YQDEFTSNQPI	11	Unmodified	_YQDEFTSNQPI_					0	0	0			REV__nc|ENSG00000086289|Q9UM22-3|EPDR1	REV__nc|ENSG00000086289|Q9UM22-3|EPDR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.8699951171875	3	447.870097	1340.58846	-0.12433	-5.5685E-05	-0.059384	-2.6596E-05	-0.18372	-8.2281E-05	447.87011214650977	28.108	1.0314	28.108	27.814	28.845	0					98	35	5	0	0	0	0.39698	1	4869	4869		11.631	0	1	1207900	+		59802	13976	34314	34315	73002	73002					-0.06821023640964086
YQELSDLL	8	Unmodified	_YQELSDLL_					0	0	0			REV__ENSG00000124486|ENST00000378308|USP9X	REV__ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	490.7684631347656	2	490.75039	979.486227	0.20265	9.945E-05	0.91462	0.00044885	1.1173	0.0005483	490.7509223825525	76.282	0.70454	76.282	76.021	76.725	0					42	24	2	0	0	0	0.33245	1	19628	19628		19.439	2.4967	1	551410	+		59803	15234	34315	34316	73003	73003					-0.004336449219067617
YQHKNLLI	8	Unmodified	_YQHKNLLI_					0	0	0		nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.798095703125	2	514.798009	1027.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.555	1	57.555	57.055	58.055	0								0	0	0	0.33941	1	13897	13897		19.439	0	1				59804	1995;1219	34316	34317	73004	73004					0.06877753059802671
YQHPNKPI	8	Unmodified	_YQHPNKPI_					0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000102001|O60840-5|CACNA1F	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	498.76641845703125	2	498.766709	995.518865	0.26767	0.00013351	0.43074	0.00021484	0.69841	0.00034835	498.7665306214636	19.383	0.48275	19.267	19.005	19.488	-0.11592					32	16	3	0	0	0	0.4419	1	2246	2246		8.5933	0	1	46413	+		59805	14299	34317	34318	73005	73005					0.020926069916072265
YQIKVKFKKL	10	Unmodified	_YQIKVKFKKL_					0	0	0		ENST00000468179.6_1_10:22607528-22607663:+|nuORF	ENST00000468179.6_1_10:22607528-22607663:+|nuORF	ENST00000468179.6_1_10:22607528-22607663:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.280029296875	3	432.279703	1293.81728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.71	1	49.755	49.255	50.255	0.044891								0	0	0	0.38065	1	11472	11472		1.9064	0.57673	1				59806	10835	34318	34319	73006	73006					0.1821226518441108
YQKAFEHL	8	Unmodified	_YQKAFEHL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8980712890625	2	518.266542	1034.51853	0.8077	0.0004186	-0.79062	-0.00040975	0.017078	8.8511E-06	518.2659547068054	37.366	0.40844	37.366	37.152	37.56	0					26	14	2	0	0	0	0.31617	1	7663	7663		26.884	5.137	1	219690			59807	4305	34319	34320	73007	73007					0.002651872717478909
YQKAFEHL	8	Unmodified	_YQKAFEHL_					0	0	0		nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	nc|ENSG00000140463|Q96RK4-3|BBS4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	517.8980712890625	2	518.266542	1034.51853	0.38041	0.00019715	0.050531	2.6188E-05	0.43094	0.00022334	518.2664647569987	37.219	0.57254	37.306	37.062	37.634	0.087406					33	20	2	0	0	0	0.30241	1	7621	7621		32.305	10.559	1	233870			59808	4305	34319	34320	73008	73008					0.002651872717478909
YQKKGKSLD	9	Unmodified	_YQKKGKSLD_					0	0	0		nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7880249023438	2	533.798206	1065.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.978	1	50.023	49.523	50.523	0.044891								0	0	0	0.23091	1	11555	11555		12.532	1.4171	1				59809	4516	34320	34321	73009	73009					0.051691279890064834
YQKKGKSLD	9	Unmodified	_YQKKGKSLD_					0	0	0		nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;ENSG00000143442|ENST00000271715|POGZ;nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	nc|ENSG00000143442|Q7Z3K3-2|POGZ	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.7880249023438	2	533.798206	1065.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.965	1	49.985	49.485	50.485	0.020691								0	0	0	0.23091	1	11543	11543		12.532	1.4171	1				59810	4516	34320	34321	73010	73010					0.051691279890064834
YQKKLESL	8	Unmodified	_YQKKLESL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.2771911621094	2	504.78985	1007.56515	0.37239	0.00018798	-3.1474	-0.0015888	-2.775	-0.0014008	504.7883753036587	53.984	0.42361	54.041	53.869	54.293	0.056255					28	15	2	0	0	0	0.3474	1	12852	12852		25.399	0	1	204650	+		59811	13586	34321	34322	73011	73011					0.06166627103038991
YQLHRLLLR	9	Unmodified	_YQLHRLLLR_					0	0	0		nc|ENSG00000164916|P85037-2|FOXK1	nc|ENSG00000164916|P85037-2|FOXK1	nc|ENSG00000164916|P85037-2|FOXK1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.3713989257812	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.32	1	113.3	112.8	113.8	-0.017303								0	0	0	0.2672	1	29459	29459		0.52476	0	1				59812	12809	34322	34323	73012	73012					0.13292484033490837
YQLYFNVII	9	Unmodified	_YQLYFNVII_					0	0	0			REV__ENST00000529945.2_2_1:144902341-144902416:-|nuORF	REV__ENST00000529945.2_2_1:144902341-144902416:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8228149414062	2	586.82115	1171.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.02	1	104.02	103.52	104.52	0								0	0	0	0.24522	1	27624	27624		7.9102	3.9658	1		+		59813	22003	34323	34324	73013	73013					0.04879773171251145
YQLYFNVII	9	Unmodified	_YQLYFNVII_					0	0	0			REV__ENST00000529945.2_2_1:144902341-144902416:-|nuORF	REV__ENST00000529945.2_2_1:144902341-144902416:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8229370117188	2	586.82115	1171.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.07	1	104.07	103.57	104.57	0								0	0	0	0.23367	1	27633	27633		11.64	5.9084	1		+		59814	22003	34323	34324	73014	73014					0.04879773171251145
YQLYFNVII	9	Unmodified	_YQLYFNVII_					0	0	0			REV__ENST00000529945.2_2_1:144902341-144902416:-|nuORF	REV__ENST00000529945.2_2_1:144902341-144902416:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8240356445312	2	586.82115	1171.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.12	1	104.12	103.62	104.62	0								0	0	0	0.25631	1	27647	27647		4.3292	0.38484	1		+		59815	22003	34323	34324	73015	73015					0.04879773171251145
YQNHRRYVK	9	Unmodified	_YQNHRRYVK_					0	0	0		nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-3|TMEM30A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.8948669433594	3	421.895022	1262.66324	-0.37866	-0.00015975	0.016712	7.0505E-06	-0.36194	-0.0001527	421.8950088759973	12.923	0.36765	12.856	12.734	13.102	-0.067496					18	12	2	0	0	0	0.25992	1	277	277		4.5289	0	1	114660			59816	2454	34324	34325	73016	73016					0.042412484715896426
YQPEVVRLY	9	Unmodified	_YQPEVVRLY_					0	0	0		ENST00000495096.5_1_22:19958242-19966598:-|nuORF;ARVCF|p.G867Afs*24|1|0.11|ENSG00000099889|chr22:19972778-19972778|C/-|frameshift_variant;nc|ENSG00000099889|O00192-2|ARVCF;ENSG00000099889|ENST00000263207|ARVCF	ENST00000495096.5_1_22:19958242-19966598:-|nuORF	ENST00000495096.5_1_22:19958242-19966598:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	584.3296508789062	2	583.813856	1165.61316	0.53344	0.00031143	0.499	0.00029132	1.0324	0.00060275	583.8139217075222	54.346	0.97762	54.33	54.002	54.98	-0.015923					75	34	4	0	0	0	0.16283	1	12991	12991		29.082	1.4528	1	1318500			59817	58	34325	34326	73017	73017					0.03697701023111222
YQPRYQPRR	9	Unmodified	_YQPRYQPRR_					0	0	0			REV__ENST00000540447.5_1_12:10856597-10862620:-|nuORF	REV__ENST00000540447.5_1_12:10856597-10862620:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.8948059082031	3	421.895022	1262.66324	-0.39019	-0.00016462	-0.0071883	-3.0327E-06	-0.39738	-0.00016765	421.8949326467303	12.906	0.30679	12.906	12.751	13.058	0					27	10	3	0	0	0	0.31164	1	268	268		7.1017	0	1	95046	+		59818	13619	34326	34327	73018	73018					0.042412484715896426
YQPRYQPRR	9	Unmodified	_YQPRYQPRR_					0	0	0			REV__ENST00000540447.5_1_12:10856597-10862620:-|nuORF	REV__ENST00000540447.5_1_12:10856597-10862620:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.89471435546875	3	421.895022	1262.66324	-0.32354	-0.0001365	-0.37343	-0.00015755	-0.69697	-0.00029405	421.89487410495855	12.98	0.36857	12.881	12.7	13.069	-0.099291					29	12	3	0	0	0	0.30824	1	287	287		7.609	0	1	97198	+		59819	13619	34326	34327	73019	73019					0.042412484715896426
YQRDPLKL	8	Unmodified	_YQRDPLKL_					0	0	0		ENST00000555641.1_1_12:57499966-57502061:-|nuORF;ENSG00000166888|ENST00000300134|STAT6	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENST00000555641.1_1_12:57499966-57502061:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.7954711914062	2	516.795466	1031.57638	0.27546	0.00014236	-3.7131	-0.0019189	-3.4376	-0.0017766	516.795456680297	39.385	0.60509	39.484	39.212	39.817	0.099403					61	21	4	0	0	0	0.29604	1	8277	8277		31.268	2.1868	1	393380			59820	6128	34327	34328	73020	73020					0.061854491971644165
YQRQNIDEHL	10	Unmodified	_YQRQNIDEHL_					0	0	0			REV__nc|ENSG00000291153|Q8TBR4|STAG3L4	REV__nc|ENSG00000291153|Q8TBR4|STAG3L4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.7513427734375	3	439.217831	1314.63166	-0.23071	-0.00010133	-2.4932	-0.0010951	-2.7239	-0.0011964	439.2166031267641	14.572	0.22591	14.572	14.423	14.649	0					14	7	3	0	0	0	0.32167	1	728	728		0.62683	0.12087	1	22019	+		59821	20819	34328	34329	73021	73021					-0.013067890729871579
YQRSLPRQ	8	Unmodified	_YQRSLPRQ_					0	0	0		ENST00000295404.9_1_19:50200719-50213852:+|nuORF;nc|ENSG00000169169|Q8TCG5-3|CPT1C;nc|ENSG00000169169|Q8TCG5-2|CPT1C;ENSG00000169169|ENST00000598293|CPT1C	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.2883911132812	2	524.28834	1046.56213	0.49295	0.00025845	-0.96964	-0.00050837	-0.47669	-0.00024992	524.2877005286559	21.75	0.7837	21.701	21.122	21.905	-0.049377					43	27	2	0	0	0	0.34414	1	2849	2849		2.0598	0	1	86248			59822	6333	34329	34330	73022	73022					0.04070796768883156
YQRVVRPLF	9	Unmodified	_YQRVVRPLF_					0	0	0		ENSG00000115255|ENST00000233596|REEP6;nc|ENSG00000115255|Q96HR9|REEP6	ENSG00000115255|ENST00000233596|REEP6	ENSG00000115255|ENST00000233596|REEP6	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3426513671875	2	589.345658	1176.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.035	1	98.035	97.535	98.535	0								0	0	0	0.25499	1	26224	26224		4.756	0.81161	1				59823	2624	34330	34331	73023	73023					0.09549106250847217
YQSSRSKDKNQ	11	Unmodified	_YQSSRSKDKNQ_					0	0	0		nc|ENSG00000113761|Q9UL40-3|ZNF346	nc|ENSG00000113761|Q9UL40-3|ZNF346	nc|ENSG00000113761|Q9UL40-3|ZNF346	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.26361083984375	3	447.556623	1339.64804	0.10875	4.8671E-05	-1.1078	-0.0004958	-0.99905	-0.00044713	447.55599941813597	18.298	0.65441	18.298	17.991	18.646	0					46	22	3	0	0	0	0.33346	1	1975	1975		0.50596	0	1	68318			59824	12658	34331	34332	73024	73024					-0.008197079069077517
YQSSRSKDKNQ	11	Unmodified	_YQSSRSKDKNQ_					0	0	0		nc|ENSG00000113761|Q9UL40-3|ZNF346	nc|ENSG00000113761|Q9UL40-3|ZNF346	nc|ENSG00000113761|Q9UL40-3|ZNF346	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	447.556623	1339.64804	-0.015682	-7.0185E-06	-1.3533	-0.00060568	-1.369	-0.0006127	447.55607579055885	18.369	0.45797	18.251	18.012	18.47	-0.11739	-0.03825	-0.00027657	NaN	0.50596	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66933			59825	12658	34331	34332							-0.008197079069077517
YQSSRSKDKNQ	11	Unmodified	_YQSSRSKDKNQ_					0	0	0		nc|ENSG00000113761|Q9UL40-3|ZNF346	nc|ENSG00000113761|Q9UL40-3|ZNF346	nc|ENSG00000113761|Q9UL40-3|ZNF346	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	447.556623	1339.64804	-0.059376	-2.6574E-05	-1.0714	-0.00047951	-1.1308	-0.00050608	447.5559795801591	18.377	0.42401	18.319	18.115	18.539	-0.058174	0.029408	0.00010195	NaN	0.50596	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83231			59826	12658	34331	34332							-0.008197079069077517
YQTDYFHLF	9	Unmodified	_YQTDYFHLF_					0	0	0		nc|ENSG00000167291|Q8TBP0-4|TBC1D16;nc|ENSG00000167291|Q8TBP0-2|TBC1D16;ENSG00000167291|ENST00000310924|TBC1D16	nc|ENSG00000167291|Q8TBP0-4|TBC1D16	nc|ENSG00000167291|Q8TBP0-4|TBC1D16	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	617.2826538085938	2	617.282389	1232.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.971	1	72.971	72.471	73.471	0								0	0	0	0.038884	1	18628	18628		64.236	43.783	1				59827	6165	34332	34333	73025	73025					-0.05674864764978338
YQTDYFHLF	9	Unmodified	_YQTDYFHLF_					0	0	0		nc|ENSG00000167291|Q8TBP0-4|TBC1D16;nc|ENSG00000167291|Q8TBP0-2|TBC1D16;ENSG00000167291|ENST00000310924|TBC1D16	nc|ENSG00000167291|Q8TBP0-4|TBC1D16	nc|ENSG00000167291|Q8TBP0-4|TBC1D16	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	617.2793579101562	2	617.282389	1232.55022	0.35213	0.00021737	-1.7866	-0.0011029	-1.4345	-0.00088549	617.280627829244	73.038	0.60571	73.009	72.71	73.315	-0.029305					37	21	3	0	0	0	0.014888	1	18626	18626		71.922	41.286	1	229090			59828	6165	34332	34333	73026	73026					-0.05674864764978338
YQTDYFHLF	9	Unmodified	_YQTDYFHLF_					0	0	0		nc|ENSG00000167291|Q8TBP0-4|TBC1D16;nc|ENSG00000167291|Q8TBP0-2|TBC1D16;ENSG00000167291|ENST00000310924|TBC1D16	nc|ENSG00000167291|Q8TBP0-4|TBC1D16	nc|ENSG00000167291|Q8TBP0-4|TBC1D16	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	617.282389	1232.55022	0.12666	7.8183E-05	-1.0392	-0.00064147	-0.91253	-0.00056329	617.2813307478006	72.891	0.57064	72.945	72.765	73.335	0.053841	-0.031922	0.00042321	NaN	71.922	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174420			59829	6165	34332	34333							-0.05674864764978338
YQTKSPFWA	9	Unmodified	_YQTKSPFWA_					0	0	0		ENSG00000248385|ENST00000432826|TARM1;nc|ENSG00000248385|B6A8C7-2|TARM1	ENSG00000248385|ENST00000432826|TARM1	ENSG00000248385|ENST00000432826|TARM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.2902221679688	2	564.279649	1126.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.102	1	45.102	44.602	45.602	0								0	0	0	0.15265	1	10053	10053		34.102	1.797	1				59830	8580	34333	34334	73027	73027					-0.01346543556769575
YQVEPEYREE	10	Unmodified	_YQVEPEYREE_					0	0	0			REV__ENSG00000134028|ENST00000256412|ADAMDEC1	REV__ENSG00000134028|ENST00000256412|ADAMDEC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	447.7779235839844	3	447.870097	1340.58846	-0.12433	-5.5685E-05	-0.059384	-2.6596E-05	-0.18372	-8.2281E-05	447.87011214650977	28.108	1.0314	28.108	27.814	28.845	0					98	35	5	0	0	0	0.31867	1	4929	4929		7.9454	1.711	1	1207900	+		59831	15650	34334	34335	73028	73028					-0.06821023640964086
YQVSPLLFNK	10	Unmodified	_YQVSPLLFNK_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.8380126953125	2	604.837331	1207.66011	0.39987	0.00024186	0.83106	0.00050265	1.2309	0.00074451	604.8378707852239	23.664	0.4556	23.625	23.364	23.82	-0.038927					26	15	2	0	0	0	0.41168	1	3532	3532		1.3295	0.80477	1	72542	+		59832	15386	34335	34336	73029	73029					0.06458560574219518
YQYWVHYL	8	Unmodified	_YQYWVHYL_					0	0	0		ENSG00000176601|ENST00000392915|MAP3K19;nc|ENSG00000176601|Q56UN5-3|MAP3K19	ENSG00000176601|ENST00000392915|MAP3K19	ENSG00000176601|ENST00000392915|MAP3K19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.8198852539062	2	586.282192	1170.54983	0.55261	0.00032399	-0.36533	-0.00021419	0.18728	0.0001098	586.282118894679	48.331	0.26171	48.331	48.156	48.417	0					10	8	2	0	0	0	0.34046	1	11022	11022		14.582	0	1	99930			59833	6937	34336	34337	73030	73030					-0.028622396941500483
YRAHILGYLM	10	Unmodified	_YRAHILGYLM_					0	0	0			REV__ENST00000468255.5_1_6:31633906-31636470:+|nuORF	REV__ENST00000468255.5_1_6:31633906-31636470:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.90789794921875	3	412.890109	1235.6485	-0.091697	-3.7861E-05	-0.50708	-0.00020937	-0.59878	-0.00024723	412.89009526735174	46.104	0.78778	46.104	45.86	46.648	0					51	28	3	0	0	0	0.31911	1	10514	10514		6.6304	3.3107	1	271990	+		59834	18943	34337	34338	73031	73031					0.040100402792404566
YRAITFLQSH	10	Unmodified	_YRAITFLQSH_					0	0	0			REV__ENSG00000162415|ENST00000359600|ZSWIM5	REV__ENSG00000162415|ENST00000359600|ZSWIM5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.3189697265625	2	618.330205	1234.64586	0.35838	0.0002216	0.60421	0.0003736	0.9626	0.0005952	618.3305371308084	45.691	1.0267	45.756	45.147	46.174	0.065048					50	37	2	0	0	0	0.3183	1	10068	10068		9.3831	2.66	1	229100			59835	16981	34338	34339	73032	73032					0.037919081459449444
YRALVKQKR	9	Unmodified	_YRALVKQKR_					0	0	0			REV__ENST00000573309.5_1_16:10971115-11002148:+|nuORF	REV__ENST00000573309.5_1_16:10971115-11002148:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.3370361328125	2	581.364382	1160.71421	0.085125	4.9489E-05	-0.28219	-0.00016405	-0.19706	-0.00011457	581.3642489698532	22.385	0.37639	22.34	22.124	22.501	-0.044867					13	12	2	0	0	0	0.26168	1	3123	3123		1.8442	0	1	32167	+		59836	22413	34339	34340	73033	73033					0.14028197516472574
YRAPELLL	8	Unmodified	_YRAPELLL_					0	0	0		nc|ENSG00000248333|P21127|CDK11B;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-3|CDK11A;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000008128|Q9UQ88-10|CDK11A;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000008128|Q9UQ88-5|CDK11A;nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000132964|P49336-2|CDK8;ENSG00000132964|ENST00000381527|CDK8;ENSG00000155111|ENST00000368911|CDK19;ENST00000561477.1_1_16:89758247-89760641:+|nuORF;nc|ENSG00000185324|Q15131-3|CDK10;nc|ENSG00000185324|Q15131-4|CDK10;ENSG00000185324|ENST00000353379|CDK10;nc|ENSG00000185324|Q15131-2|CDK10;nc|ENSG00000185324|Q15131-7|CDK10;ENST00000356937.7_1_1:1634348-1635645:-|nuORF;ENST00000505733.5_1_16:89758861-89762180:+|nuORF;ENST00000472018.5_1_16:89760470-89762097:+|nuORF;ENST00000463652.5_1_1:1635130-1635691:-|nuORF;nc|ENSG00000155111|Q9BWU1-2|CDK19	nc|ENSG00000248333|P21127|CDK11B	nc|ENSG00000248333|P21127|CDK11B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	487.7870788574219	2	487.78711	973.559667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.056	1	56.037	55.537	56.537	-0.019081								0	0	0	0.3293	1	13425	13425		24.021	0	1				59837	388	34340	34341	73034	73034					0.0718294831123103
YRAQPSVSL	9	Unmodified	_YRAQPSVSL_					0	0	0		ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	ENSG00000239306|ENST00000310137|RBM14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	511.3115234375	2	510.777274	1019.53999	0.32995	0.00016853	-0.32237	-0.00016466	0.0075812	3.8723E-06	510.77699177620326	38.072	0.71433	38.163	37.906	38.62	0.090881					38	25	2	0	0	0	0.22674	1	7850	7850		22.736	3.4793	1	306910			59838	8512	34341	34342	73035	73035					0.031005723004682295
YRAREHSRSR	10	Unmodified	_YRAREHSRSR_					0	0	0			REV__nc|ENSG00000183337|Q6W2J9-3|BCOR	REV__nc|ENSG00000183337|Q6W2J9-3|BCOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.2028503417969	3	439.900947	1316.68101	-0.24357	-0.00010715	2.8029	0.001233	2.5593	0.0011259	440.23625223048134	18.609	0.4437	18.551	18.372	18.816	-0.058174					26	15	2	0	0	0	0.32106	1	1988	1988		2.8433	0.75728	1	44848	+		59839	18257	34342	34343	73036	73036					0.03533963726431466
YRAWLHLWS	9	Unmodified	_YRAWLHLWS_					0	0	0			REV__ENST00000481195.5_1_5:133536086-133536140:-|nuORF	REV__ENST00000481195.5_1_5:133536086-133536140:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.91162109375	3	411.217214	1230.62981	-0.16895	-6.9475E-05	1.5133	0.0006223	1.3444	0.00055282	411.21777570684657	34.26	0.80216	34.327	33.995	34.797	0.0667					46	28	2	0	0	0	0.25992	1	6799	6799		4.5289	4.5289	1	178170	+		59840	21487	34343	34344	73037	73037					0.023722466997014635
YRAYGELLQ	9	Unmodified	_YRAYGELLQ_					0	0	0			REV__nc|ENSG00000172046|O94966-4|USP19	REV__nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3042602539062	2	556.790381	1111.56621	0.27692	0.00015419	1.227	0.00068317	1.5039	0.00083736	556.791119411683	74.127	0.16167	74.127	74.029	74.191	0					5	4	2	0	0	0	0.18803	1	18990	18990		25.399	2.663	1	85037	+		59841	17688	34344	34345	73038	73038					0.014888414719507637
YRCELCGKRF	10	Unmodified	_YRCELCGKRF_					0	0	0		ENSG00000171161|ENST00000306562|ZNF672	ENSG00000171161|ENST00000306562|ZNF672	ENSG00000171161|ENST00000306562|ZNF672	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	637.8117065429688	2	637.810267	1273.60598	0.78732	0.00050216	2.3573	0.0015035	3.1446	0.0020056	637.8115477295792	83.93	0.52049	83.913	83.455	83.976	-0.016823					38	23	2	0	0	0	0.39227	1	21916	21916		4.897	1.3005	1	172980			59842	6519	34345	34346	73039	73039					-0.019876781206448868
YRCLIFKF	8	Unmodified	_YRCLIFKF_					0	0	0			REV__ENSG00000138271|ENST00000260843|GPR87	REV__ENSG00000138271|ENST00000260843|GPR87	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.2991943359375	2	545.29933	1088.58411	0.10877	5.931E-05	-0.14406	-7.8558E-05	-0.035299	-1.9249E-05	545.2992562200691	12.183	0.31389	12.183	12.119	12.433	0					20	11	3	0	0	0	0.45942	1	54	54		2.5775	0	1	107530	+		59843	15915	34346	34347	73040	73040					0.04335885193108879
YRCRRLGGL	9	Unmodified	_YRCRRLGGL_					0	0	0			REV__ENST00000462901.5_1_3:88190218-88199018:-|nuORF	REV__ENST00000462901.5_1_3:88190218-88199018:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	547.3060302734375	2	547.30601	1092.59747	0.19525	0.00010686	0.1318	7.2133E-05	0.32705	0.00017899	547.3060581287347	13.276	0.73862	13.177	12.98	13.718	-0.099291					63	25	3	0	0	0	0.35914	1	414	414		0	0	1	1350300	+		59844	21239	34347	34348	73041	73041					0.054871360250672296
YRDRFMIHDRF	11	Unmodified	_YRDRFMIHDRF_					0	0	0			REV__ENSG00000148429|ENST00000609104|USP6NL	REV__ENSG00000148429|ENST00000609104|USP6NL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.7750854492188	3	519.257743	1554.7514	0.51311	0.00026644	-2.5586	-0.0013286	-2.0455	-0.0010621	519.2565032705876	36.092	0.6418	36.092	35.665	36.307	0					39	23	2	0	0	0	0.33277	1	7225	7225		3.0723	1.6171	1	212160	+		59845	16425	34348	34349	73042	73042					-0.0037849900011224236
YREGLGGK	8	Unmodified	_YREGLGGK_					0	0	0			REV__ENST00000334660.9_1_15:41572225-41572549:+|nuORF	REV__ENST00000334660.9_1_15:41572225-41572549:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.237548828125	2	440.237784	878.461016	-0.075504	-3.324E-05	0.72593	0.00031958	0.65042	0.00028634	440.23784161931826	15.878	0.66938	15.878	15.679	16.349	0					50	23	3	0	0	0	0.3474	1	1156	1156		25.399	0	1	144500	+		59846	20064	34349	34350	73043	73043					0.01692345066192047
YREVWNKY	8	Unmodified	_YREVWNKY_					0	0	0			REV__ENSG00000221866|ENST00000321063|PLXNA4	REV__ENSG00000221866|ENST00000321063|PLXNA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.80615234375	2	579.290548	1156.56654	0.68716	0.00039806	-0.79145	-0.00045848	-0.1043	-6.0417E-05	579.2907602902103	37.305	0.55232	37.305	37.063	37.616	0					30	19	3	0	0	0	0.28696	1	7715	7715		32.305	2.4649	1	319800	+		59847	19095	34350	34351	73044	73044					-0.005477388081999379
YREVWNKY	8	Unmodified	_YREVWNKY_					0	0	0			REV__ENSG00000221866|ENST00000321063|PLXNA4	REV__ENSG00000221866|ENST00000321063|PLXNA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.8064575195312	2	579.290548	1156.56654	0.68716	0.00039806	-0.79145	-0.00045848	-0.1043	-6.0417E-05	579.2907602902103	37.305	0.55232	37.305	37.063	37.616	0					30	19	3	0	0	0	0.28969	1	7762	7762		36.044	0	1	319800	+		59848	19095	34350	34351	73045	73045					-0.005477388081999379
YRFVCDLQSL	10	Unmodified	_YRFVCDLQSL_					0	0	0		nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-4|ETS1;nc|ENSG00000134954|P14921-2|ETS1	nc|ENSG00000134954|P14921|ETS1	nc|ENSG00000134954|P14921|ETS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.316650390625	2	622.310623	1242.60669	0.25342	0.00015771	-0.022874	-1.4235E-05	0.23055	0.00014347	622.3093388688302	64.894	2.01	64.894	63.997	66.007	0					270	73	6	0	0	0	0.19885	1	15965	15965		32.786	1.5173	1	5652600			59849	3831	34351	34352	73046	73046					-0.0049056019993258815
YRFVCDLQSL	10	Unmodified	_YRFVCDLQSL_					0	0	0		nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-4|ETS1;nc|ENSG00000134954|P14921-2|ETS1	nc|ENSG00000134954|P14921|ETS1	nc|ENSG00000134954|P14921|ETS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.3167114257812	2	622.310623	1242.60669	0.084685	5.27E-05	0.17889	0.00011133	0.26358	0.00016403	622.30943591155	64.774	1.7494	64.867	64.066	65.815	0.09288					240	64	6	0	0	0	0.21126	1	15909	15909		31.268	3.6395	1	5693100			59850	3831	34351	34352	73047	73047					-0.0049056019993258815
YRGAVPWYTI	10	Unmodified	_YRGAVPWYTI_					0	0	0		nc|ENSG00000104763|Q13510-2|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-3|ASAH1	nc|ENSG00000104763|Q13510-2|ASAH1	nc|ENSG00000104763|Q13510-2|ASAH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	409.53656005859375	3	409.216991	1224.62914	-0.40058	-0.00016392	-1.4184	-0.00058045	-1.819	-0.00074437	409.2165221777903	27.901	0.53754	27.901	27.615	28.153	0					69	18	5	0	0	0	0.31178	1	4852	4852		14.218	5.9317	1	2097500			59851	1913	34352	34353	73048	73048					0.025814072600041982
YRGGYEDPY	9	Unmodified	_YRGGYEDPY_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;chr6:85641451-85641990|481|13.22|0.81|4.04|-|ENST00000677059|SYNCRIP,SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000125944|O43390-4|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000125944|O43390-3|HNRNPR	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.7659301757812	2	560.240721	1118.46689	0.16742	9.3797E-05	0.82335	0.00046128	0.99078	0.00055507	560.2409651215061	33.093	0.55588	33.093	32.837	33.393	0					33	19	2	0	0	0	0.24848	1	6403	6403		13.906	5.3128	1	219780			59852	174	34353	34354	73049	73049					-0.08760601212816255
YRGGYEDPY	9	Unmodified	_YRGGYEDPY_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;chr6:85641451-85641990|481|13.22|0.81|4.04|-|ENST00000677059|SYNCRIP,SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000125944|O43390-4|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000125944|O43390-3|HNRNPR	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.7659301757812	2	560.240721	1118.46689	0.29467	0.00016509	0.64164	0.00035947	0.93631	0.00052456	560.2408051213156	32.944	0.49812	32.999	32.786	33.284	0.055309					28	17	2	0	0	0	0.23784	1	6342	6342		13.906	6.6168	1	235140			59853	174	34353	34354	73050	73050					-0.08760601212816255
YRGGYEDPY	9	Unmodified	_YRGGYEDPY_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;chr6:85641451-85641990|481|13.22|0.81|4.04|-|ENST00000677059|SYNCRIP,SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000125944|O43390-4|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000125944|O43390-3|HNRNPR	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.7659301757812	2	560.240721	1118.46689	0.19371	0.00010852	0.71866	0.00040263	0.91237	0.00051115	560.2409172412972	33.033	0.55721	33.087	32.818	33.375	0.054371					31	19	4	0	0	0	0.24289	1	6352	6352		18.146	10.857	1	225130			59854	174	34353	34354	73051	73051					-0.08760601212816255
YRGIFPVL	8	Unmodified	_YRGIFPVL_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	482.7848205566406	2	482.78437	963.554188	0.40592	0.00019597	0.3322	0.00016038	0.73812	0.00035635	482.78453901362064	66.168	1.5275	66.168	65.608	67.135	0					148	54	3	0	0	0	0.13961	6	16531	16487;16531;16574;16649;16695;16810		53.576	14.182	1	12562000			59855	862	34354	34355	73052;73053;73054;73055;73056;73057	73053					0.07095269519413705
YRGIFPVL	8	Unmodified	_YRGIFPVL_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.78472900390625	2	482.78437	963.554188	0.44008	0.00021247	0.22153	0.00010695	0.66161	0.00031942	482.78446000410713	66.017	1.6142	66.101	65.541	67.156	0.083832					152	58	3	0	0	0	0.13961	5	16484	16438;16484;16527;16629;16739		53.576	23.536	1	12245000			59856	862	34354	34355	73058;73059;73060;73061;73062	73059					0.07095269519413705
YRGIFPVL	8	Unmodified	_YRGIFPVL_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.771240234375	2	482.78437	963.554188	0.29167	0.00014081	-0.69729	-0.00033664	-0.40562	-0.00019583	482.7839526710862	67.188	0.74265	67.266	67.183	67.925	0.078041					45	25	2	0	0	0	0.34131	1	16901	16901		12.532	1.4171	1	143140			59857	862	34354	34355	73063	73063					0.07095269519413705
YRGIFPVL	8	Unmodified	_YRGIFPVL_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.7846984863281	2	482.78437	963.554188	0.32018	0.00015458	0.33095	0.00015978	0.65113	0.00031435	482.78451689465476	66.138	1.8044	66.124	65.556	67.36	-0.013588					161	64	3	0	0	0	0.13961	6	16513	16466;16513;16562;16653;16720;16745		53.576	12.29	1	13385000			59858	862	34354	34355	73064;73065;73066;73067;73068;73069	73065					0.07095269519413705
YRGLALFEALL	11	Unmodified	_YRGLALFEALL_					0	0	0			REV__nc|ENSG00000154914|Q70EL4-4|USP43	REV__nc|ENSG00000154914|Q70EL4-4|USP43	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3689575195312	2	633.366256	1264.71796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.3	1	115.32	114.82	115.82	0.018738								0	0	0	0.38126	1	29956	29956		1.1933	0.50296	1		+		59859	16683	34355	34356	73070	73070					0.09618822499669477
YRHCSIETM	9	Unmodified	_YRHCSIETM_					0	0	0		ENSG00000162543|ENST00000375099|UBXN10	ENSG00000162543|ENST00000375099|UBXN10	ENSG00000162543|ENST00000375099|UBXN10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.234619140625	2	570.252251	1138.48995	0.36163	0.00020622	-1.7256	-0.00098405	-1.364	-0.00077783	570.2516389452385	36.347	1.1163	36.347	36.142	37.259	0					82	39	3	0	0	0	0.24467	1	7443	7443		17.113	2.2746	1	890310			59860	5580	34356	34357	73071	73071					-0.07375621691335255
YRHFFGHTF	9	Unmodified	_YRHFFGHTF_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-3|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.2906494140625	2	606.290882	1210.56721	0.30278	0.00018358	0.27972	0.00016959	0.58251	0.00035317	606.2910193788568	39.232	0.36079	39.324	39.137	39.497	0.09267					22	12	2	0	0	0	0.023967	1	8261	8261		62.573	43.316	1	213420			59861	8655	34357	34358	73072	73072					-0.029648993684986635
YRHFFGHTF	9	Unmodified	_YRHFFGHTF_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-3|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	606.290882	1210.56721	0.12311	7.4638E-05	-0.079858	-4.8417E-05	0.043248	2.6221E-05	606.2907359520458	39.431	0.69464	39.431	39.164	39.858	0	0.042354	-6.8804E-05	NaN	62.573	39	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209710			59862	8655	34357	34358							-0.029648993684986635
YRHFFGHTF	9	Unmodified	_YRHFFGHTF_					0	0	0		nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-3|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	nc|ENSG00000260916|Q9ULG6-2|CCPG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	606.290882	1210.56721	0.36626	0.00022206	-0.16476	-9.9892E-05	0.2015	0.00012217	606.2906551617154	39.31	0.57599	39.41	39.212	39.788	0.099403	0.02149	-0.00017175	NaN	62.573	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249550			59863	8655	34357	34358							-0.029648993684986635
YRIFQKMNN	9	Unmodified	_YRIFQKMNN_					0	0	0			REV__ENSG00000196296|ENST00000395503|ATP2A1	REV__ENSG00000196296|ENST00000395503|ATP2A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	405.8984069824219	3	405.209731	1212.60736	-0.04398	-1.7821E-05	-0.66562	-0.00026972	-0.7096	-0.00028754	405.5436587114177	31.893	0.65373	31.934	31.802	32.456	0.040991					35	22	2	0	0	0	0.25612	1	5989	5989		2.4985	0	1	621390	+		59864	18640	34358	34359	73073	73073					0.009562792397900921
YRKPPTLFR	9	Unmodified	_YRKPPTLFR_					0	0	0		ENST00000367211.4_2_1:219786136-219786322:-|nuORF;ENST00000466470.5_1_1:203764919-203765618:+|nuORF	ENST00000367211.4_2_1:219786136-219786322:-|nuORF	ENST00000367211.4_2_1:219786136-219786322:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3427124023438	2	589.345658	1176.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.21	1	117.21	116.71	117.71	0								0	0	0	0.2646	1	30322	30322		1.6526	0	1				59865	9729	34359	34360	73074	73074					0.09549106250847217
YRKPPTLFR	9	Unmodified	_YRKPPTLFR_					0	0	0		ENST00000367211.4_2_1:219786136-219786322:-|nuORF;ENST00000466470.5_1_1:203764919-203765618:+|nuORF	ENST00000367211.4_2_1:219786136-219786322:-|nuORF	ENST00000367211.4_2_1:219786136-219786322:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3441162109375	2	589.345658	1176.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.26	1	114.24	113.74	114.74	-0.019096								0	0	0	0.264	1	29678	29678		1.8442	0.6509	1				59866	9729	34359	34360	73075	73075					0.09549106250847217
YRKPPTLFR	9	Unmodified	_YRKPPTLFR_					0	0	0		ENST00000367211.4_2_1:219786136-219786322:-|nuORF;ENST00000466470.5_1_1:203764919-203765618:+|nuORF	ENST00000367211.4_2_1:219786136-219786322:-|nuORF	ENST00000367211.4_2_1:219786136-219786322:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3429565429688	2	589.345658	1176.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.06	1	117.03	116.53	117.53	-0.022781								0	0	0	0.2646	1	30310	30310		1.6526	0	1				59867	9729	34359	34360	73076	73076					0.09549106250847217
YRKPPTLFR	9	Unmodified	_YRKPPTLFR_					0	0	0		ENST00000367211.4_2_1:219786136-219786322:-|nuORF;ENST00000466470.5_1_1:203764919-203765618:+|nuORF	ENST00000367211.4_2_1:219786136-219786322:-|nuORF	ENST00000367211.4_2_1:219786136-219786322:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.34423828125	2	589.345658	1176.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.32	1	117.3	116.8	117.8	-0.024147								0	0	0	0.264	1	30370	30370		1.8442	0.36234	1				59868	9729	34359	34360	73077	73077					0.09549106250847217
YRKPTYESY	9	Unmodified	_YRKPTYESY_					0	0	0		nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A;nc|ENSG00000165240|Q04656-4|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.7933349609375	2	603.793121	1205.57169	0.47102	0.0002844	0.30533	0.00018435	0.77635	0.00046875	603.7931823730927	26.783	0.47658	26.762	26.478	26.955	-0.021412					26	16	2	0	0	0	0.2719	1	4488	4488		13.042	5.7532	1	104460			59869	5939	34360	34361	73078	73078					-0.022874797362419486
YRKPTYESY	9	Unmodified	_YRKPTYESY_					0	0	0		nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A;nc|ENSG00000165240|Q04656-4|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	603.793121	1205.57169	0.40068	0.00024193	0.16574	0.00010008	0.56643	0.000342	603.7930989363651	26.802	0.5926	26.802	26.499	27.091	0	0.0067422	6.2057E-05	NaN	13.042	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108950			59870	5939	34360	34361							-0.022874797362419486
YRKPTYESY	9	Unmodified	_YRKPTYESY_					0	0	0		nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A;nc|ENSG00000165240|Q04656-4|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	603.793121	1205.57169	0.46551	0.00028107	-0.11373	-6.867E-05	0.35178	0.0002124	604.2944502570817	26.833	0.4747	26.821	26.595	27.07	-0.011562	0.026326	-0.00027543	NaN	13.042	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103550			59871	5939	34360	34361							-0.022874797362419486
YRKTDFYL	8	Unmodified	_YRKTDFYL_					0	0	0			REV__ENSG00000108671|ENST00000261712|PSMD11	REV__ENSG00000108671|ENST00000261712|PSMD11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	553.2871704101562	2	553.287474	1104.5604	0.46395	0.0002567	0.064937	3.5929E-05	0.52889	0.00029263	553.2872011903155	79.376	0.7592	79.437	79.216	79.975	0.061417					62	30	3	0	0	0	0.42077	1	20572	20572		15.847	0	1	364040	+		59872	14605	34361	34362	73079	73079					0.012297429602767807
YRKVFTHSSL	10	Unmodified	_YRKVFTHSSL_					0	0	0		ENSG00000185947|ENST00000300870|ZNF267;ENST00000575471.2_1_16:31925765-31927799:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267	ENSG00000185947|ENST00000300870|ZNF267	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.55023193359375	3	413.227779	1236.66151	0.085513	3.5336E-05	0.71414	0.0002951	0.79965	0.00033044	413.22803642736375	21.914	0.77069	21.864	21.633	22.404	-0.049377					49	27	2	0	0	0	0.37297	1	3136	3136		8.4443	0	1	219090			59873	7571	34362	34363	73080	73080					0.05264194663004673
YRKVKNHI	8	Unmodified	_YRKVKNHI_					0	0	0			REV__ENSG00000198315|ENST00000330236|ZKSCAN8	REV__ENSG00000198315|ENST00000330236|ZKSCAN8	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	529.3007202148438	2	529.3169	1056.61925	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114	1	114	113.5	114.5	0								0	0	0	0.38004	1	29592	29592		0.69038	0	1		+		59874	18817	34363	34364	73081	73081					0.09320264045254589
YRKYCESLA	9	Unmodified	_YRKYCESLA_					0	0	0		ENSG00000143390|ENST00000452671|RFX5;ENST00000469513.5_1_1:151316885-151317631:-|nuORF	ENSG00000143390|ENST00000452671|RFX5	ENSG00000143390|ENST00000452671|RFX5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.2542724609375	2	566.776416	1131.53828	0.4563	0.00025862	-0.73008	-0.00041379	-0.27378	-0.00015517	566.7759375931935	44.93	0.41866	44.999	44.843	45.261	0.068569					20	14	2	0	0	0	0.25323	1	10075	10075		10.074	2.7847	1	146070			59875	4511	34364	34365	73082	73082					-0.022228047797852923
YRLDLQGNEY	10	Unmodified	_YRLDLQGNEY_					0	0	0		ENST00000407916.2_1_7:55004007-55004829:+|nuORF	ENST00000407916.2_1_7:55004007-55004829:+|nuORF	ENST00000407916.2_1_7:55004007-55004829:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.2062072753906	3	424.206932	1269.59897	-1.3084	-0.00055501	0.33485	0.00014205	-0.97351	-0.00041297	424.2070473886882	34.998	0.74277	34.998	34.697	35.439	0					61	26	3	0	0	0	0.32148	1	6952	6952		1.4551	1.4551	1	817970			59876	10232	34365	34366	73083	73083					-0.025049961958302447
YRLELEVPQ	9	Unmodified	_YRLELEVPQ_					0	0	0		ENSG00000144283|ENST00000389759|PKP4;nc|ENSG00000144283|Q99569-2|PKP4;ENST00000480171.7_1_2:159519375-159537186:+|nuORF	ENSG00000144283|ENST00000389759|PKP4	ENSG00000144283|ENST00000389759|PKP4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.296142578125	2	573.811313	1145.60807	0.38597	0.00022148	0.57328	0.00032896	0.95926	0.00055043	573.8112431545254	34.121	0.39518	34.187	34.04	34.435	0.06636					17	13	2	0	0	0	0.26168	1	6744	6744		1.8442	0.36234	1	74662			59877	4572	34366	34367	73084	73084					0.04109397160482331
YRLELEVPQ	9	Unmodified	_YRLELEVPQ_					0	0	0		ENSG00000144283|ENST00000389759|PKP4;nc|ENSG00000144283|Q99569-2|PKP4;ENST00000480171.7_1_2:159519375-159537186:+|nuORF	ENSG00000144283|ENST00000389759|PKP4	ENSG00000144283|ENST00000389759|PKP4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	573.811313	1145.60807	0.12398	7.1142E-05	0.50744	0.00029118	0.63142	0.00036232	573.8117847255904	34.078	0.27365	34.145	33.995	34.268	0.066704	-0.021143	-1.5399E-05	NaN	1.8442	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65988			59878	4572	34366	34367							0.04109397160482331
YRLFVIFHL	9	Unmodified	_YRLFVIFHL_					0	0	0		ENSG00000131951|ENST00000570145|LRRC9;nc|ENSG00000131951|Q6ZRR7|LRRC9;nc|ENSG00000131951|Q6ZRR7-2|LRRC9	ENSG00000131951|ENST00000570145|LRRC9	ENSG00000131951|ENST00000570145|LRRC9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	403.92926025390625	3	403.237726	1206.69135	-0.30135	-0.00012151	0.91574	0.00036926	0.6144	0.00024775	403.23794745855486	42.767	0.61985	42.858	42.527	43.147	0.091362					31	22	2	0	0	0	0.25811	1	9354	9354		2.9952	0	1	408680			59879	3599	34367	34368	73085	73085					0.09627178399000513
YRLGVLGFLS	10	Unmodified	_YRLGVLGFLS_					0	0	0		ENSG00000169992|ENST00000302926|NLGN2;nc|ENSG00000169760|Q8N2Q7-2|NLGN1;ENSG00000169760|ENST00000695368|NLGN1;nc|ENSG00000169760|Q8N2Q7|NLGN1	ENSG00000169992|ENST00000302926|NLGN2	ENSG00000169992|ENST00000302926|NLGN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.2745971679688	2	562.826766	1123.63898	0.21509	0.00012106	-0.033503	-1.8856E-05	0.18159	0.0001022	562.8267583599777	41.268	0.24941	41.365	41.148	41.397	0.096622					14	8	2	0	0	0	0.31629	1	8806	8806		10.074	0.6908	1	224280			59880	6412	34368	34369	73086	73086					0.08210595265381926
YRLGVLGFLS	10	Unmodified	_YRLGVLGFLS_					0	0	0		ENSG00000169992|ENST00000302926|NLGN2;nc|ENSG00000169760|Q8N2Q7-2|NLGN1;ENSG00000169760|ENST00000695368|NLGN1;nc|ENSG00000169760|Q8N2Q7|NLGN1	ENSG00000169992|ENST00000302926|NLGN2	ENSG00000169992|ENST00000302926|NLGN2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	562.826766	1123.63898	0.23699	0.00013339	-0.12803	-7.2058E-05	0.10897	6.1329E-05	562.8265954997823	41.33	0.29408	41.42	41.162	41.456	0.090252	0.027476	-9.2412E-05	NaN	10.074	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194210			59881	6412	34368	34369							0.08210595265381926
YRLLSLKY	8	Unmodified	_YRLLSLKY_					0	0	0		ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	ENSG00000025796|ENST00000369002|SEC63	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.3162231445312	2	528.316035	1054.61752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.73	1	115.75	115.25	116.25	0.018738								0	0	0	0.37724	1	30055	30055		2.3027	0	1				59882	535	34369	34370	73087	73087					0.09239210236660256
YRLRASKA	8	Unmodified	_YRLRASKA_					0	0	0		ENSG00000215009|ENST00000399422|ACSM4	ENSG00000215009|ENST00000399422|ACSM4	ENSG00000215009|ENST00000399422|ACSM4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.1981506347656	2	482.787976	963.561398	0.17543	8.4696E-05	-1.0058	-0.00048559	-0.83037	-0.00040089	482.7879040911909	22.215	0.39785	22.115	21.968	22.366	-0.10034					23	14	2	0	0	0	0.34408	1	3108	3108		2.3027	0	1	57953			59883	8396	34370	34371	73088	73088					0.07816002119830046
YRLRVEDLHV	10	Unmodified	_YRLRVEDLHV_					0	0	0			REV__ENST00000556103.1_1_14:23946427-23946595:+|nuORF	REV__ENST00000556103.1_1_14:23946427-23946595:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.2837219238281	3	433.910449	1298.70952	0.041465	1.7992E-05	-0.13057	-5.6657E-05	-0.089109	-3.8665E-05	433.9103080965788	47.336	0.69851	47.388	47.142	47.841	0.052574					74	25	4	0	0	0	0.32068	1	10871	10871		3.5871	0.26742	1	2053100	+		59884	22255	34371	34372	73089	73089					0.07211268583000674
YRLRVEDLHV	10	Unmodified	_YRLRVEDLHV_					0	0	0			REV__ENST00000556103.1_1_14:23946427-23946595:+|nuORF	REV__ENST00000556103.1_1_14:23946427-23946595:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	433.910449	1298.70952	0.16236	7.045E-05	-0.10263	-4.453E-05	0.059734	2.5919E-05	433.91029388507184	47.437	0.636	47.437	47.187	47.823	0	0.017698	0.00010208	NaN	3.5871	69	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1717100	+		59885	22255	34371	34372							0.07211268583000674
YRLRVEDLHV	10	Unmodified	_YRLRVEDLHV_					0	0	0			REV__ENST00000556103.1_1_14:23946427-23946595:+|nuORF	REV__ENST00000556103.1_1_14:23946427-23946595:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	433.910449	1298.70952	0.45016	0.00019533	-0.34509	-0.00014974	0.10507	4.5591E-05	433.9101861640361	47.378	0.58883	47.432	47.168	47.757	0.054371	0.013021	-0.00021355	NaN	3.5871	71	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2023900	+		59886	22255	34371	34372							0.07211268583000674
YRLTILILVF	10	Unmodified	_YRLTILILVF_					0	0	0		ENSG00000164129|ENST00000338566|NPY5R	ENSG00000164129|ENST00000338566|NPY5R	ENSG00000164129|ENST00000338566|NPY5R	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.8945922851562	2	625.897192	1249.77983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.1	1	112.12	111.62	112.62	0.0131								0	0	0	0.38201	1	29184	29184		0.45834	0	1				59887	5797	34372	34373	73090	73090					0.16493173918775028
YRLTYAYF	8	Unmodified	_YRLTYAYF_					0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.312255859375	2	548.776742	1095.53893	0.27548	0.00015118	2.2377	0.001228	2.5132	0.0013792	548.7774127641798	16.371	0.4849	16.371	16.063	16.548	0					30	16	3	0	0	0	0.34408	1	1355	1355		0.6015	0.076735	1	38866			59888	6556	34373	34374	73091	73091					-0.0050164206845693116
YRLYLRSLE	9	Unmodified	_YRLYLRSLE_					0	0	0		ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1	ENSG00000171100|ENST00000370396|MTM1	ENSG00000171100|ENST00000370396|MTM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.7985229492188	2	606.840405	1211.66626	0.58007	0.00035201	1.7264	0.0010476	2.3065	0.0013997	606.8408652286151	57.358	0.65287	57.358	57.012	57.665	0					33	21	2	0	0	0	0.24688	1	13783	13783		14.838	0	1	309240			59889	6510	34374	34375	73092	73092					0.06889078805738791
YRNAYTMVL	9	Oxidation (M)	_YRNAYTM(Oxidation (M))VL_		YRNAYTM(1)VL		YRNAYTM(73)VL	0	0	1		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;CUL3|p.T583*|1|0.23|ENSG00000036257|chr2:224495927-224495928|-/TA|frameshift_variant	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.7843627929688	2	573.784241	1145.55393	0.2163	0.00012411	0.22661	0.00013003	0.44292	0.00025414	573.7843788109221	43.085	0.97518	43.085	42.706	43.681	0					95	35	4	0	0	0	0.014206	2	9418	9418;9471		72.968	47.569	1	2559800			59890	577	34375	34376	73093;73094	73093		66			-0.013025182627643517
YRNAYTMVL	9	Oxidation (M)	_YRNAYTM(Oxidation (M))VL_		YRNAYTM(1)VL		YRNAYTM(83)VL	0	0	1		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;CUL3|p.T583*|1|0.23|ENSG00000036257|chr2:224495927-224495928|-/TA|frameshift_variant	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.7843627929688	2	573.784241	1145.55393	0.24628	0.00014131	0.055009	3.1563E-05	0.30129	0.00017287	573.7842574244302	42.743	0.78386	42.828	42.487	43.271	0.085197					90	28	4	0	0	0	0.0079761	2	9310	9310;9363		82.529	54.356	1	3542000			59891	577	34375	34376	73095;73096	73095		66			-0.013025182627643517
YRNAYTMVL	9	Oxidation (M)	_YRNAYTM(Oxidation (M))VL_		YRNAYTM(1)VL		YRNAYTM(83)VL	0	0	1		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;CUL3|p.T583*|1|0.23|ENSG00000036257|chr2:224495927-224495928|-/TA|frameshift_variant	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.7843627929688	2	573.784241	1145.55393	0.063694	3.6546E-05	0.1327	7.6139E-05	0.19639	0.00011269	573.7843424276492	42.669	1.001	42.76	42.441	43.442	0.091362					96	36	4	0	0	0	0.0079761	2	9282	9282;9330		82.529	51.893	1	3205800			59892	577	34375	34376	73097;73098	73097		66			-0.013025182627643517
YRNRNFYEL	9	Unmodified	_YRNRNFYEL_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	425.5472412109375	3	425.5474	1273.62037	-0.037228	-1.5842E-05	-0.16171	-6.8814E-05	-0.19894	-8.4656E-05	425.5472176608515	38.258	1.0391	38.349	38.011	39.05	0.090881					104	37	5	0	0	0	0.22188	2	7945	7945;7990		14.405	3.5202	1	1154000			59893	12694	34376	34377	73099;73100	73099					-0.0054956637648047035
YRPAYLVTL	9	Unmodified	_YRPAYLVTL_					0	0	0		ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602574.5_1_10:22607528-22607842:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.3133544921875	2	548.313492	1094.61243	0.4409	0.00024175	-0.38129	-0.00020907	0.059601	3.268E-05	548.3132562846336	58.87	0.59029	58.87	58.624	59.215	0					42	20	3	0	0	0	0.040595	1	14299	14299		74.929	74.929	1	745990			59894	4814	34377	34378	73101	73101					0.0689090637404206
YRPAYLVTL	9	Unmodified	_YRPAYLVTL_					0	0	0		ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602574.5_1_10:22607528-22607842:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.3135986328125	2	548.313492	1094.61243	0.56802	0.00031145	-0.38788	-0.00021268	0.18014	9.8775E-05	548.3132499908952	58.704	0.62471	58.796	58.586	59.211	0.091301					52	21	4	0	0	0	0.023103	1	14246	14246		81.89	81.89	1	840610			59895	4814	34377	34378	73102	73102					0.0689090637404206
YRPAYLVTL	9	Unmodified	_YRPAYLVTL_					0	0	0		ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602574.5_1_10:22607528-22607842:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.3134765625	2	548.313492	1094.61243	0.56591	0.00031029	-0.4428	-0.0002428	0.1231	6.7498E-05	548.3130809036763	58.876	0.42877	58.862	58.684	59.113	-0.014267					36	14	3	0	0	0	0.0075874	1	14295	14295		71.922	71.922	1	789800			59896	4814	34377	34378	73103	73103					0.0689090637404206
YRPGTVAL	8	Unmodified	_YRPGTVAL_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENST00000427081.2_1_1:53409259-53409544:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	438.7508544921875	2	438.750527	875.486502	0.46351	0.00020336	-0.40218	-0.00017646	0.061328	2.6908E-05	438.7503417082824	37.533	0.44806	37.533	37.259	37.707	0					37	15	3	0	0	0	0.16948	2	7705	7705;7754		48.346	6.0636	1	1063000			59897	3640	34378	34379	73104;73105	73104					0.04377819588614784
YRPGTVAL	8	Unmodified	_YRPGTVAL_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENST00000427081.2_1_1:53409259-53409544:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	438.75048828125	2	438.750527	875.486502	0.1245	5.4624E-05	0.020613	9.0441E-06	0.14511	6.3669E-05	438.75049751976536	37.385	0.4424	37.472	37.247	37.69	0.08741					42	15	4	0	0	0	0.16948	2	7724	7673;7724		48.346	18.121	1	1145100			59898	3640	34378	34379	73106;73107	73107					0.04377819588614784
YRPGTVAL	8	Unmodified	_YRPGTVAL_					0	0	0		ENSG00000132475|ENST00000254810|H3-3B;ENSG00000197153|ENST00000359303|H3C12;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000275379|ENST00000616365|H3C11;ENSG00000203811|ENST00000369158|H3C14;ENSG00000197409|ENST00000356476|H3C4;ENSG00000183598|ENST00000331491|H3C13;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000203852|ENST00000403683|H3C15;ENSG00000188375|ENST00000340398|H3-5;ENSG00000168148|ENST00000366696|H3-4;nc|ENSG00000273213|Q5TEC6|H3-7;ENST00000497682.1_1_3:109128527-109128830:-|nuORF;ENST00000427081.2_1_1:53409259-53409544:-|nuORF	ENSG00000132475|ENST00000254810|H3-3B	ENSG00000132475|ENST00000254810|H3-3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.75042724609375	2	438.750527	875.486502	0.13852	6.0777E-05	0.027955	1.2265E-05	0.16648	7.3042E-05	438.75048603064494	37.341	0.42779	37.434	37.222	37.65	0.093018					40	15	3	0	0	0	0.13277	2	7698	7653;7698		54.774	24.549	1	1358300			59899	3640	34378	34379	73108;73109	73109					0.04377819588614784
YRPLTVLTF	9	Unmodified	_YRPLTVLTF_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3;TMTC3|p.N621Sfs*8|1|0.03|ENSG00000139324|chr12:88192757-88192758|-/TCGAA|frameshift_variant;TMTC3|p.S557Tfs*2|1|0.32|ENSG00000139324|chr12:88190586-88190586|G/-|frameshift_variant;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4	ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000125247|Q5T4D3-2|TMTC4	ENSG00000139324|ENST00000266712|TMTC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	555.3214111328125	2	555.321317	1108.62808	0.086428	4.7995E-05	0.72114	0.00040046	0.80757	0.00044846	555.3216300361184	66.802	0.66733	66.788	66.572	67.239	-0.013596					67	23	4	0	0	0	0.020233	1	16755	16755		63.961	7.7835	1	572800			59900	4229;3194	34379	34380	73110	73110					0.07811192891040264
YRPPELLL	8	Unmodified	_YRPPELLL_					0	0	0		nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.S1017Ffs*5|1|0.07|ENSG00000167258|chr17:39520040-39520041|-/TTCTCAAATTTGTA|frameshift_variant;CDK12|p.I1188Tfs*27|1|0.35|ENSG00000167258|chr17:39526119-39526119|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000136807|ENST00000373264|CDK9	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.7949523925781	2	500.794935	999.575317	0.0010422	5.2194E-07	-0.10011	-5.0133E-05	-0.099065	-4.9611E-05	500.79481671095493	60.106	1.2873	60.106	59.621	60.908	0					136	46	4	0	0	0	0.095164	5	14653	14603;14653;14697;14738;14791		61.357	25.23	1	10775000			59901	6163;827;3998	34380	34381	73111;73112;73113;73114;73115	73112					0.07551234828292763
YRPPELLL	8	Unmodified	_YRPPELLL_					0	0	0		nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.S1017Ffs*5|1|0.07|ENSG00000167258|chr17:39520040-39520041|-/TTCTCAAATTTGTA|frameshift_variant;CDK12|p.I1188Tfs*27|1|0.35|ENSG00000167258|chr17:39526119-39526119|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000136807|ENST00000373264|CDK9	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.7947692871094	2	500.794935	999.575317	-0.23082	-0.00011559	0.21843	0.00010939	-0.012388	-6.2039E-06	500.79497120125075	59.958	1.5166	60.053	59.491	61.008	0.095093					147	54	4	0	0	0	0.13277	5	14613	14564;14613;14656;14698;14776		54.774	20.671	1	11867000			59902	6163;827;3998	34380	34381	73116;73117;73118;73119;73120	73117					0.07551234828292763
YRPPELLL	8	Unmodified	_YRPPELLL_					0	0	0		nc|ENSG00000065883|Q14004-2|CDK13;ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.S1017Ffs*5|1|0.07|ENSG00000167258|chr17:39520040-39520041|-/TTCTCAAATTTGTA|frameshift_variant;CDK12|p.I1188Tfs*27|1|0.35|ENSG00000167258|chr17:39526119-39526119|T/-|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000136807|ENST00000373264|CDK9	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	500.79473876953125	2	500.794935	999.575317	0.20227	0.0001013	-0.25371	-0.00012706	-0.051435	-2.5758E-05	500.7947605103665	60.072	1.4233	60.06	59.543	60.966	-0.011486					140	51	4	0	0	0	0.13277	4	14646	14603;14646;14700;14749		54.774	18.729	1	11298000			59903	6163;827;3998	34380	34381	73121;73122;73123;73124	73122					0.07551234828292763
YRPPEVIL	8	Unmodified	_YRPPEVIL_					0	0	0		ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.7870178222656	2	493.78711	985.559667	0.47552	0.0002348	-0.22406	-0.00011064	0.25146	0.00012417	493.7869794908212	53.018	1.4235	53.018	52.523	53.946	0					100	52	4	0	0	0	0.22	2	12454	12454;12502		39.957	9.7325	1	2599900			59904	7117	34381	34382	73125;73126	73125					0.06630948311226348
YRPPEVIL	8	Unmodified	_YRPPEVIL_					0	0	0		ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.787109375	2	493.78711	985.559667	0.64745	0.0003197	-0.32118	-0.00015859	0.32627	0.00016111	493.7869541917425	52.984	1.3649	53.04	52.558	53.923	0.056259					93	50	3	0	0	0	0.3474	1	12437	12437		25.399	4.9457	1	2932000			59905	7117	34381	34382	73127	73127					0.06630948311226348
YRPPEVIL	8	Unmodified	_YRPPEVIL_					0	0	0		ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7869567871094	2	493.78711	985.559667	0.40199	0.0001985	-0.22749	-0.00011233	0.17451	8.6169E-05	493.7870002915263	53.057	1.3821	53.048	52.654	54.036	-0.0096054					96	51	4	0	0	0	0.22	2	12471	12471;12531		39.957	9.7325	1	2680100			59906	7117	34381	34382	73128;73129	73128					0.06630948311226348
YRPRINKL	8	Unmodified	_YRPRINKL_					0	0	0		ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	530.3239135742188	2	530.324725	1058.6349	0.29228	0.000155	0.00084659	4.4897E-07	0.29312	0.00015545	530.3246441492629	19.176	0.8723	19.176	18.895	19.768	0					67	30	3	0	0	0	0.46022	1	2292	2292		2.3027	0	1	190970			59907	5802	34382	34383	73130	73130					0.10792550562314318
YRPVHYFR	8	Unmodified	_YRPVHYFR_					0	0	0		ENSG00000076650|ENST00000170564|GPATCH1	ENSG00000076650|ENST00000170564|GPATCH1	ENSG00000076650|ENST00000170564|GPATCH1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.8359985351562	2	569.30125	1136.58795	-0.089683	-5.1057E-05	-0.71064	-0.00040457	-0.80032	-0.00045563	569.300002407934	13.195	0.30702	13.195	13.058	13.365	0					13	10	2	0	0	0	0.34408	1	379	379		0.6015	0	1	48496			59908	1067	34383	34384	73131	73131					0.025116910111592006
YRPVRQYVY	9	Unmodified	_YRPVRQYVY_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.3333129882812	2	622.332747	1242.65094	0.18618	0.00011587	0.35665	0.00022195	0.54283	0.00033782	622.3328658427047	33.114	0.67439	33.114	32.837	33.512	0					64	23	4	0	0	0	0.015924	3	6351	6351;6394;6475		78.149	47.513	1	752640			59909	12572	34384	34385	73132;73133;73134	73132					0.039322120085671486
YRPVRQYVY	9	Unmodified	_YRPVRQYVY_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	622.332763671875	2	622.332747	1242.65094	0.039421	2.4533E-05	0.35622	0.00022169	0.39564	0.00024622	622.3328456972424	32.926	0.63714	32.981	32.704	33.341	0.055309					55	22	3	0	0	0	0.014206	2	6363	6310;6363		88.904	50.93	1	753370			59910	12572	34384	34385	73135;73136	73136					0.039322120085671486
YRPVRQYVY	9	Unmodified	_YRPVRQYVY_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	622.3330078125	2	622.332747	1242.65094	0.12767	7.9456E-05	0.50242	0.00031267	0.6301	0.00039213	622.3329415655122	33.007	0.69165	33.062	32.818	33.509	0.054375					57	24	3	0	0	0	0.0079761	2	6372	6327;6372		81.613	34.291	1	1063900			59911	12572	34384	34385	73137;73138	73138					0.039322120085671486
YRPVRQYVY	9	Unmodified	_YRPVRQYVY_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.2242736816406	3	415.224257	1242.65094	0.15303	6.3543E-05	0.048092	1.9969E-05	0.20112	8.3512E-05	415.22422135054114	33.018	1.1018	33.073	32.765	33.867	0.054371					88	39	3	0	0	0	0.27726	1	6333	6333		12.241	1.3417	1	1646700			59912	12572	34384	34385	73139	73139					0.039322120085671486
YRQEKICWL	9	Unmodified	_YRQEKICWL_					0	0	0		ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	ENSG00000144820|ENST00000273352|ADGRG7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.5497131347656	3	413.549864	1237.62776	0.41721	0.00017254	-0.56904	-0.00023533	-0.15183	-6.279E-05	413.54967693462083	19.983	1.3007	19.927	19.309	20.61	-0.055693					134	46	4	0	0	0	0.33276	1	2369	2369		2.2828	1.0679	1	1092200			59913	4614	34385	34386	73140	73140					0.018454498995652102
YRQKKIFDL	9	Unmodified	_YRQKKIFDL_					0	0	0		ENST00000467222.1_1_13:48528420-48528684:-|nuORF;nc|ENSG00000136143|Q9P2R7-2|SUCLA2;ENSG00000136143|ENST00000646932|SUCLA2	ENST00000467222.1_1_13:48528420-48528684:-|nuORF	ENST00000467222.1_1_13:48528420-48528684:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.22625732421875	3	404.236274	1209.68699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.164	1	24.164	23.664	24.664	0								0	0	0	0.26044	1	3667	3667		2.9952	0.15196	1				59914	3945	34386	34387	73141	73141					0.09053669185436775
YRQKRVVP	8	Unmodified	_YRQKRVVP_					0	0	0			REV__ENSG00000125965|ENST00000374369|GDF5	REV__ENSG00000125965|ENST00000374369|GDF5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.7954711914062	2	523.3169	1044.61925	0.47723	0.00024974	4.3549	0.002279	4.8322	0.0025288	523.8212304405175	29.627	0.21425	29.639	29.56	29.774	0.012266					9	6	2	0	0	0	0.34408	1	5331	5331		2.3027	0.65011	1	42777	+		59915	15293	34387	34388	73142	73142					0.0987226404527064
YRQLCIYWT	9	Unmodified	_YRQLCIYWT_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.8082275390625	2	623.307884	1244.60121	-0.07873	-4.9073E-05	-1.1025	-0.00068719	-1.1812	-0.00073627	623.3074193771753	26.267	0.42278	26.228	26.01	26.433	-0.038671					20	14	2	0	0	0	0.26257	1	4351	4351		0.52476	0	1	45660			59916	2362	34388	34389	73143	73143					-0.011302389917773326
YRQLCIYWT	9	Unmodified	_YRQLCIYWT_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	623.307884	1244.60121	0.18087	0.00011274	-0.73436	-0.00045773	-0.55349	-0.000345	623.3073524973487	26.216	0.36802	26.216	26.042	26.41	0	-0.1331	2.334E-05	NaN	0.52476	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61635			59917	2362	34388	34389							-0.011302389917773326
YRQLCIYWT	9	Unmodified	_YRQLCIYWT_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	623.307884	1244.60121	0.36072	0.00022484	-0.38853	-0.00024217	-0.027813	-1.7336E-05	623.3075384197205	26.625	0.084154	26.603	26.53	26.614	-0.022238	0.2537	0.00045446	NaN	0.52476	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48563			59918	2362	34388	34389							-0.011302389917773326
YRQRKQLHI	9	Unmodified	_YRQRKQLHI_					0	0	0		ERVL-E-int_dup1261|chr2:154469035-154470401:+|1.5917130338343672|0.0973889572275544|4.03|523.0|74|2|anti-sense	ERVL-E-int_dup1261|chr2:154469035-154470401:+|1.5917130338343672|0.0973889572275544|4.03|523.0|74|2|anti-sense	ERVL-E-int_dup1261|chr2:154469035-154470401:+|1.5917130338343672|0.0973889572275544|4.03|523.0|74|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.8949279785156	3	414.579034	1240.71527	0.41235	0.00017095	-1.6058	-0.00066571	-1.1934	-0.00049476	414.57819735836466	20.166	0.64858	20.05	19.642	20.29	-0.11592					45	23	3	0	0	0	0.2615	1	2349	2349		2.4985	0	1	141780			59919	12339	34389	34390	73144	73144					0.10454411885370973
YRQRKQLHI	9	Unmodified	_YRQRKQLHI_					0	0	0		ERVL-E-int_dup1261|chr2:154469035-154470401:+|1.5917130338343672|0.0973889572275544|4.03|523.0|74|2|anti-sense	ERVL-E-int_dup1261|chr2:154469035-154470401:+|1.5917130338343672|0.0973889572275544|4.03|523.0|74|2|anti-sense	ERVL-E-int_dup1261|chr2:154469035-154470401:+|1.5917130338343672|0.0973889572275544|4.03|523.0|74|2|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.21856689453125	3	414.579034	1240.71527	0.45444	0.0001884	-1.8324	-0.00075968	-1.378	-0.00057128	414.5781018143184	20.088	0.47054	20.033	19.678	20.149	-0.055693					36	16	3	0	0	0	0.26245	1	2323	2323		0.96228	0.96228	1	131660			59920	12339	34389	34390	73145	73145					0.10454411885370973
YRQRKQLHI	9	Unmodified	_YRQRKQLHI_					0	0	0		ERVL-E-int_dup1261|chr2:154469035-154470401:+|1.5917130338343672|0.0973889572275544|4.03|523.0|74|2|anti-sense	ERVL-E-int_dup1261|chr2:154469035-154470401:+|1.5917130338343672|0.0973889572275544|4.03|523.0|74|2|anti-sense	ERVL-E-int_dup1261|chr2:154469035-154470401:+|1.5917130338343672|0.0973889572275544|4.03|523.0|74|2|anti-sense	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	414.579034	1240.71527	-0.092486	-3.8343E-05	-1.4159	-0.00058699	-1.5083	-0.00062533	414.57840858019193	19.96	0.47218	19.96	19.685	20.157	0	-0.053854	0.00024686	NaN	0.96228	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140630			59921	12339	34389	34390							0.10454411885370973
YRQRQRSRRRR	11	Unmodified	_YRQRQRSRRRR_					0	0	0		ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.9853515625	3	539.984228	1616.93085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.404	1	97.398	96.898	97.898	-0.0055466								0	0	0	0.38222	1	26077	26077		0.094841	0	1				59922	6877	34390	34391	73146	73146					0.14706566122708864
YRQRQRSRRRR	11	Unmodified	_YRQRQRSRRRR_					0	0	0		ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	ENSG00000175646|ENST00000312511|PRM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.9849853515625	3	539.984228	1616.93085	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.649	1	97.643	97.143	98.143	-0.0068283								0	0	0	0.38223	1	26147	26147		0.08335	0	1				59923	6877	34390	34391	73147	73147					0.14706566122708864
YRQRYRRL	8	Unmodified	_YRQRYRRL_					0	0	0			REV__ENSG00000139620|ENST00000420613|KANSL2	REV__ENSG00000139620|ENST00000420613|KANSL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.5690002441406	3	404.235379	1209.68431	-0.21783	-8.8055E-05	0.066551	2.6902E-05	-0.15128	-6.1153E-05	404.23538349336485	18.193	0.51386	18.193	17.991	18.505	0					35	17	3	0	0	0	0.34419	1	1831	1831		0.45834	0	1	62420	+		59924	15995	34391	34392	73148	73148					0.08785258571106169
YRRGILTKPY	10	Unmodified	_YRRGILTKPY_					0	0	0			REV__NEK11|p.A26G|1|0.1|ENSG00000114670|chr3:131029785-131029785|C/G|missense_variant	REV__NEK11|p.A26G|1|0.1|ENSG00000114670|chr3:131029785-131029785|C/G|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	422.59259033203125	3	422.915423	1265.72444	0.15749	6.6605E-05	-0.39566	-0.00016733	-0.23817	-0.00010073	422.91506849713693	44.492	0.38364	44.56	44.408	44.791	0.068573					32	13	3	0	0	0	0.3183	1	9884	9884		8.4443	0.96724	1	433220	+		59925	23276	34392	34393	73149	73149					0.10220760451056776
YRRKDGVFLY	10	Unmodified	_YRRKDGVFLY_					0	0	0		ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	439.5750732421875	3	439.575178	1315.70371	-0.57245	-0.00025164	0.39997	0.00017581	-0.17249	-7.5822E-05	439.5752654740915	34.418	0.92976	34.418	34.104	35.033	0					94	32	4	0	0	0	0.37297	1	6809	6809		8.4443	0.96724	1	664550			59926	3223	34393	34394	73150	73150					0.05848170071385539
YRRKDGVFLY	10	Unmodified	_YRRKDGVFLY_					0	0	0		ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	439.5749816894531	3	439.575178	1315.70371	-0.50953	-0.00022398	0.27348	0.00012021	-0.23605	-0.00010376	439.57519984233164	34.265	1.0222	34.332	34.012	35.034	0.06636					91	36	4	0	0	0	0.37823	1	6770	6770		7.4771	0.85361	1	691550			59927	3223	34393	34394	73151	73151					0.05848170071385539
YRRKDGVFLY	10	Unmodified	_YRRKDGVFLY_					0	0	0		ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	ENST00000584583.1_1_17:37006387-37006753:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	439.5750427246094	3	439.575178	1315.70371	-0.20798	-9.1421E-05	-0.03204	-1.4084E-05	-0.24002	-0.00010551	439.57510909583914	34.254	0.92252	34.321	34.071	34.994	0.066704					92	32	4	0	0	0	0.35267	1	6696	6696		12.175	1.3752	1	685710			59928	3223	34393	34394	73152	73152					0.05848170071385539
YRRKLKKYG	9	Unmodified	_YRRKLKKYG_					0	0	0		ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.370361328125	2	606.372207	1210.72986	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.72	1	110.72	110.22	111.22	0								0	0	0	0.26704	1	28854	28854		0.6015	0	1				59929	5622	34394	34395	73153	73153					0.13292484033490837
YRRLQAKV	8	Unmodified	_YRRLQAKV_					0	0	0		nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	nc|ENSG00000147439|Q9NQY0-2|BIN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.8009643554688	2	517.3169	1032.61925	0.50698	0.00026227	-1.9477	-0.0010076	-1.4407	-0.0007453	517.3163098888842	29.052	1.4344	29.052	28.76	30.194	0					134	51	6	0	0	0	0.34092	1	5481	5481		8.5933	0	1	8306000			59930	4765	34395	34396	73154	73154					0.10424264045263953
YRSKRLMKR	9	Unmodified	_YRSKRLMKR_					0	0	0		COL6A6|p.L2209Sfs*21|1|0.66|ENSG00000206384|chr3:130675228-130675228|C/-|frameshift_variant;ENSG00000206384|ENST00000358511|COL6A6	COL6A6|p.L2209Sfs*21|1|0.66|ENSG00000206384|chr3:130675228-130675228|C/-|frameshift_variant	COL6A6|p.L2209Sfs*21|1|0.66|ENSG00000206384|chr3:130675228-130675228|C/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	619.3705444335938	2	619.369141	1236.72373	0.22815	0.00014131	1.4451	0.00089508	1.6733	0.0010364	619.370673733844	91.758	1.3518	91.758	91.205	92.557	0					278	100	4	0	0	0	0.33508	1	24366	24366		3.5965	0	1	787150			59931	197	34396	34397	73155	73155					0.11483642530333782
YRSNYTRKHFR	11	Unmodified	_YRSNYTRKHFR_					0	0	0		nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6;nc|ENSG00000119121|Q9BX84-5|TRPM6;TRPM6|p.N813Wfs*92|1|0.04|ENSG00000119121|chr9:74792726-74792727|-/GCCAC|frameshift_variant	nc|ENSG00000119121|Q9BX84-4|TRPM6	nc|ENSG00000119121|Q9BX84-4|TRPM6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	510.2288513183594	3	509.935769	1526.78548	0.43557	0.00022211	0.9825	0.00050101	1.4181	0.00072313	510.2700874270726	35.93	0.29201	35.93	35.745	36.037	0					14	10	2	0	0	0	0.3333	1	7206	7206		1.3296	0	1	159620			59932	2859	34397	34398	73156	73156					0.04315665483159137
YRTEKEREKL	10	Unmodified	_YRTEKEREKL_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;ENST00000602204.1_1_19:16980786-16982347:+|nuORF;ENST00000595900.1_1_19:16980720-16983386:+|nuORF	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	451.75262451171875	3	451.249131	1350.72556	0.49728	0.0002244	-0.6725	-0.00030347	-0.17522	-7.9069E-05	451.24879354600046	37.07	0.61458	37.07	36.7	37.314	0					50	21	3	0	0	0	0.31497	1	7485	7485		14.218	9.812	1	351570			59933	3324	34398	34399	73157	73157					0.06422930029270901
YRTGHEIPAEH	11	Unmodified	_YRTGHEIPAEH_					0	0	0		ENST00000445995.2_1_9:98055153-98055345:+|nuORF;ATMIN|p.L555*|1|0.32|ENSG00000166454|chr16:81044162-81044169|TAAATCAA/-|frameshift_variant;nc|ENSG00000166454|O43313-2|ATMIN;ENSG00000166454|ENST00000299575|ATMIN	ENST00000445995.2_1_9:98055153-98055345:+|nuORF	ENST00000445995.2_1_9:98055153-98055345:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	437.89276123046875	3	437.214309	1308.6211	-0.2188	-9.5661E-05	0.068502	2.995E-05	-0.15029	-6.571E-05	437.214265337175	23.186	0.83244	23.186	22.736	23.569	0					76	28	4	0	0	0	0.3331	1	3280	3280		2.2527	0	1	372750			59934	63	34399	34400	73158	73158					-0.020867717274541064
YRTGPCFTVI	10	Unmodified	_YRTGPCFTVI_					0	0	0		ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	ENSG00000166147|ENST00000316623|FBN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7794799804688	2	578.794609	1155.57467	0.50304	0.00029116	-1.2765	-0.00073882	-0.77345	-0.00044767	578.7936632759784	65.972	0.68252	65.972	65.686	66.369	0					46	24	3	0	0	0	0.34325	1	16525	16525		13.906	0.86358	1	244170			59935	6033	34400	34401	73159	73159					0.0031007211689484393
YRVDGILFGG	10	Unmodified	_YRVDGILFGG_					0	0	0		ENSG00000101680|ENST00000389658|LAMA1;ENST00000579014.5_1_18:6942080-7042306:-|nuORF	ENSG00000101680|ENST00000389658|LAMA1	ENSG00000101680|ENST00000389658|LAMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7932739257812	2	548.792924	1095.57129	0.75247	0.00041295	-0.57516	-0.00031564	0.17731	9.7308E-05	548.7924923473269	54.664	0.85067	54.664	54.188	55.039	0					88	30	4	0	0	0	0.24105	1	12992	12992		27.629	7.1752	1	994190			59936	1716	34401	34402	73160	73160					0.027331453345595946
YRVEISIF	8	Unmodified	_YRVEISIF_					0	0	0		nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	nc|ENSG00000151067|Q13936-2|CACNA1C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.7844848632812	2	513.784567	1025.55458	0.38317	0.00019687	-0.17983	-9.2392E-05	0.20335	0.00010448	513.7843757771755	79.419	0.72554	79.39	78.97	79.696	-0.028923					63	29	3	0	0	0	0.4397	1	20634	20634		9.3474	0	1	407960			59937	4934	34402	34403	73161	73161					0.04282644448608153
YRVWCDNEF	9	Unmodified	_YRVWCDNEF_					0	0	0			REV__ENST00000526890.5_1_11:3039642-3048038:-|nuORF	REV__ENST00000526890.5_1_11:3039642-3048038:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.2276306152344	3	411.178207	1230.51279	-0.1311	-5.3904E-05	-0.84066	-0.00034566	-0.97176	-0.00039957	411.17814584425895	17.808	0.46715	17.808	17.66	18.127	0					37	15	3	0	0	0	0.26251	1	1697	1697		0.26902	0	1	62774	+		59938	14675	34403	34404	73162	73162					-0.09324279302245486
YRVWCDNEF	9	Unmodified	_YRVWCDNEF_					0	0	0			REV__ENST00000526890.5_1_11:3039642-3048038:-|nuORF	REV__ENST00000526890.5_1_11:3039642-3048038:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	411.178207	1230.51279	-0.028182	-1.1588E-05	-0.65587	-0.00026968	-0.68405	-0.00028127	411.1779853896845	18.002	0.48931	17.885	17.694	18.184	-0.11739	0.017773	9.4569E-05	NaN	0.26902	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50580	+		59939	14675	34403	34404							-0.09324279302245486
YRWYRYFN	8	Unmodified	_YRWYRYFN_					0	0	0		ENST00000395514.5_1_14:55309440-55309725:-|nuORF	ENST00000395514.5_1_14:55309440-55309725:-|nuORF	ENST00000395514.5_1_14:55309440-55309725:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.326904296875	2	634.30399	1266.59343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.31	1	100.3	99.805	100.8	-0.006897								0	0	0	0.37183	1	26840	26840		4.756	0.81161	1				59940	10093	34404	34405	73163	73163					-0.02920630197013452
YSAFAAHPF	9	Unmodified	_YSAFAAHPF_					0	0	0		ENSG00000180929|ENST00000322241|GPR62	ENSG00000180929|ENST00000322241|GPR62	ENSG00000180929|ENST00000322241|GPR62	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.27685546875	2	505.74016	1009.46577	0.31069	0.00015713	-0.31539	-0.00015951	-0.0047017	-2.3778E-06	505.73992360960807	57.219	0.35647	57.298	57.04	57.397	0.078671					15	12	2	0	0	0	0.21905	1	13753	13753		23.148	10.617	1	151240			59941	7213	34405	34406	73164	73164					-0.0385877079106649
YSAFAAHPF	9	Unmodified	_YSAFAAHPF_					0	0	0		ENSG00000180929|ENST00000322241|GPR62	ENSG00000180929|ENST00000322241|GPR62	ENSG00000180929|ENST00000322241|GPR62	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.3135070800781	2	505.74016	1009.46577	0.16831	8.5121E-05	-0.064427	-3.2583E-05	0.10388	5.2538E-05	505.7400503298664	57.505	0.41228	57.488	57.17	57.582	-0.017197					21	14	2	0	0	0	0.23783	1	13872	13872		18.135	1.1927	1	160590			59942	7213	34405	34406	73165	73165					-0.0385877079106649
YSAKDYFFK	9	Unmodified	_YSAKDYFFK_					0	0	0		ENSG00000105402|ENST00000263354|NAPA;nc|ENSG00000125814|Q9H115-2|NAPB;ENSG00000125814|ENST00000377026|NAPB;ENST00000472855.5_1_20:23360446-23370651:-|nuORF;nc|ENSG00000125814|Q9H115-3|NAPB	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.312255859375	2	584.787307	1167.56006	0.30799	0.00018011	-2.6305	-0.0015383	-2.3225	-0.0013582	584.7868681690588	43.209	0.51263	43.209	42.954	43.467	0					36	18	3	0	0	0	0.25431	1	9412	9412		9.3831	1.2276	1	197810			59943	1977	34406	34407	73166	73166					-0.017016767596032878
YSALLGLFCL	10	Unmodified	_YSALLGLFCL_					0	0	0			REV__ENSG00000176294|ENST00000557677|OR4N2	REV__ENSG00000176294|ENST00000557677|OR4N2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.3128051757812	2	550.296453	1098.57835	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.672	1	76.672	76.172	77.172	0								0	0	0	0.34994	1	19754	19754		14.838	1.3304	1		+		59944	17932	34407	34408	73167	73167					0.033007418907800457
YSALRQNFF	9	Unmodified	_YSALRQNFF_					0	0	0		ENST00000588321.1_1_19:11453493-11456176:-|nuORF;ENSG00000105518|ENST00000354882|TMEM205	ENST00000588321.1_1_19:11453493-11456176:-|nuORF	ENST00000588321.1_1_19:11453493-11456176:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.279296875	2	573.290548	1144.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.495	1	89.494	88.994	89.994	-0.00080872								0	0	0	0.24311	1	23672	23672		8.5933	0	1				59945	12144	34408	34409	73168	73168					4.261191793375474E-05
YSALVSMRKL	10	Unmodified	_YSALVSMRKL_					0	0	0			REV__ENST00000473243.5_1_19:19762333-19765368:-|nuORF	REV__ENST00000473243.5_1_19:19762333-19765368:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.7449951171875	2	584.331359	1166.64816	0.56259	0.00032874	3.6	0.0021036	4.1626	0.0024323	584.3332400753311	64.344	0.48401	64.344	64.079	64.563	0					27	17	2	0	0	0	0.31267	1	16013	16013		10.074	5.3179	1	130620	+		59946	14484	34409	34410	73169	73169					0.07150620559400522
YSAPSGILFPL	11	Unmodified	_YSAPSGILFPL_					0	0	0			REV__ENST00000522234.5_1_X:47085656-47085860:+|nuORF	REV__ENST00000522234.5_1_X:47085656-47085860:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.8186645507812	2	582.818607	1163.62266	0.33511	0.00019531	0.20434	0.00011909	0.53945	0.0003144	582.8185676422431	90.626	0.64239	90.626	90.292	90.934	0					109	50	3	0	0	0	0.14521	1	24017	24017		36.127	3.3413	1	436500	+		59947	21912	34410	34411	73170	73170					0.04739469308628941
YSAPSGILFPL	11	Unmodified	_YSAPSGILFPL_					0	0	0			REV__ENST00000522234.5_1_X:47085656-47085860:+|nuORF	REV__ENST00000522234.5_1_X:47085656-47085860:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.818603515625	2	582.818607	1163.62266	0.45326	0.00026417	0.33251	0.00019379	0.78577	0.00045796	582.8185487473985	90.567	0.65044	90.567	90.287	90.937	0.00039673					117	48	3	0	0	0	0.082456	2	23993	23993;24035		43.858	9.0539	1	435430	+		59948	21912	34410	34411	73171;73172	73171					0.04739469308628941
YSAPSGILFPL	11	Unmodified	_YSAPSGILFPL_					0	0	0			REV__ENST00000522234.5_1_X:47085656-47085860:+|nuORF	REV__ENST00000522234.5_1_X:47085656-47085860:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	582.818607	1163.62266	0.33511	0.00019531	0.20434	0.00011909	0.53945	0.0003144	582.8185676422431	90.626	0.64239	90.626	90.292	90.934	0	0.046018	-0.00011109	NaN	43.858	109	50	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	436500	+		59949	21912	34410	34411							0.04739469308628941
YSAPSGILFPL	11	Unmodified	_YSAPSGILFPL_					0	0	0			REV__ENST00000522234.5_1_X:47085656-47085860:+|nuORF	REV__ENST00000522234.5_1_X:47085656-47085860:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	582.818607	1163.62266	0.31994	0.00018647	0.38909	0.00022677	0.70903	0.00041324	582.8184901259099	90.456	0.65448	90.546	90.225	90.879	0.090668	-0.033601	0.00010426	NaN	43.858	125	50	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	441170	+		59950	21912	34410	34411							0.04739469308628941
YSAPSGILFPL	11	Unmodified	_YSAPSGILFPL_					0	0	0			REV__ENST00000522234.5_1_X:47085656-47085860:+|nuORF	REV__ENST00000522234.5_1_X:47085656-47085860:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	582.818607	1163.62266	0.45326	0.00026417	0.33251	0.00019379	0.78577	0.00045796	582.8185487473985	90.567	0.65044	90.567	90.287	90.937	0.00039673	-0.012417	3.8308E-05	NaN	43.858	117	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435430	+		59951	21912	34410	34411							0.04739469308628941
YSAQIDVRI	9	Unmodified	_YSAQIDVRI_					0	0	0			REV__ENST00000587838.1_1_17:74554648-74557410:+|nuORF	REV__ENST00000587838.1_1_17:74554648-74557410:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	532.7907104492188	2	532.790381	1063.56621	0.37468	0.00019962	-0.16935	-9.0228E-05	0.20533	0.0001094	532.7902563539477	46.427	1.6292	46.427	46.168	47.797	0					139	58	4	0	0	0	0.18803	1	10565	10565		25.399	0.40835	1	5208700	+		59952	22537	34411	34412	73173	73173					0.036968414719467546
YSASPLCLPF	10	Unmodified	_YSASPLCLPF_					0	0	0		nc|ENSG00000205213|Q9BXB1-2|LGR4;ENSG00000205213|ENST00000379214|LGR4	nc|ENSG00000205213|Q9BXB1-2|LGR4	nc|ENSG00000205213|Q9BXB1-2|LGR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.281494140625	2	549.270435	1096.52632	0.39184	0.00021523	-0.4734	-0.00026002	-0.081561	-4.4799E-05	549.2700845401902	60.453	0.7527	60.453	60.098	60.851	0					66	27	3	0	0	0	0.33268	1	14909	14909		15.847	1.0089	1	1795900			59953	8277	34412	34413	73174	73174					-0.018084215230146583
YSASPLCLPF	10	Unmodified	_YSASPLCLPF_					0	0	0		nc|ENSG00000205213|Q9BXB1-2|LGR4;ENSG00000205213|ENST00000379214|LGR4	nc|ENSG00000205213|Q9BXB1-2|LGR4	nc|ENSG00000205213|Q9BXB1-2|LGR4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2813720703125	2	549.270435	1096.52632	0.53849	0.00029578	-0.37427	-0.00020557	0.16422	9.0204E-05	549.2701017497454	60.487	0.80135	60.476	60.085	60.886	-0.01136					64	28	3	0	0	0	0.33268	1	14858	14858		15.847	0	1	1528400			59954	8277	34412	34413	73175	73175					-0.018084215230146583
YSASYIQRI	9	Unmodified	_YSASYIQRI_					0	0	0		ENST00000482369.1_1_7:89845768-89854412:+|nuORF;ENST00000426158.1_3_7:89841229-89854412:+|nuORF	ENST00000482369.1_1_7:89845768-89854412:+|nuORF	ENST00000482369.1_1_7:89845768-89854412:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.789794921875	2	550.790381	1099.56621	0.76077	0.00041902	-1.5848	-0.00087291	-0.82406	-0.00045389	550.7896509725954	54.941	0.67207	54.941	54.526	55.198	0					42	24	3	0	0	0	0.079752	1	13076	13076		41.84	5.7126	1	932800			59955	10416	34413	34414	73176	73176					0.02040841471944077
YSASYIQRI	9	Unmodified	_YSASYIQRI_					0	0	0		ENST00000482369.1_1_7:89845768-89854412:+|nuORF;ENST00000426158.1_3_7:89841229-89854412:+|nuORF	ENST00000482369.1_1_7:89845768-89854412:+|nuORF	ENST00000482369.1_1_7:89845768-89854412:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.7897338867188	2	550.790381	1099.56621	0.7103	0.00039123	-1.5383	-0.0008473	-0.82804	-0.00045607	550.7894346738755	55.036	0.59	55.02	54.821	55.411	-0.015923					30	21	2	0	0	0	0.10197	1	13121	13121		37.974	4.5291	1	1122500			59956	10416	34413	34414	73177	73177					0.02040841471944077
YSASYIQRI	9	Unmodified	_YSASYIQRI_					0	0	0		ENST00000482369.1_1_7:89845768-89854412:+|nuORF;ENST00000426158.1_3_7:89841229-89854412:+|nuORF	ENST00000482369.1_1_7:89845768-89854412:+|nuORF	ENST00000482369.1_1_7:89845768-89854412:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	550.790381	1099.56621	0.74242	0.00040892	-1.2261	-0.00067535	-0.48372	-0.00026643	550.7897337878055	54.909	0.61507	54.973	54.566	55.181	0.063206	-0.0053245	0.00026287	NaN	41.84	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1303300			59957	10416	34413	34414							0.02040841471944077
YSCAGRRSE	9	Unmodified	_YSCAGRRSE_					0	0	0			REV__nc|ENSG00000173826|Q9H252-3|KCNH6	REV__nc|ENSG00000173826|Q9H252-3|KCNH6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	514.733154296875	2	514.73254	1027.45053	0.44925	0.00023124	0.25235	0.00012989	0.7016	0.00036114	514.7327231914744	74.317	2.7418	74.317	73.307	76.049	0					120	97	2	0	0	0	0.22215	1	19167	19167		20.415	0.97554	1	350050	+		59958	17807	34414	34415	73178	73178					-0.06210005650564199
YSCGRSFSF	9	Unmodified	_YSCGRSFSF_					0	0	0			REV__ENSG00000010327|ENST00000321725|STAB1	REV__ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.3447875976562	2	527.226559	1052.43857	0.63391	0.00033421	1.4579	0.00076864	2.0918	0.0011029	527.2272227213691	75.495	0.14256	75.463	75.416	75.558	-0.031487					6	4	2	0	0	0	0.2451	1	19379	19379		15.847	0	1	54463	+		59959	13414	34415	34416	73179	73179					-0.08555622393737394
YSCPYCSKR	9	Unmodified	_YSCPYCSKR_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	553.7416381835938	2	553.741519	1105.46849	0.35307	0.00019551	-0.31284	-0.00017323	0.040224	2.2274E-05	553.7413782431248	39.891	0.52567	39.99	39.762	40.288	0.099407					30	18	2	0	0	0	0.12642	1	8446	8446		34.402	2.0962	1	384070			59960	1795	34416	34417	73180	73180					-0.0800300672008234
YSDDMRFAP	9	Unmodified	_YSDDMRFAP_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.7862548828125	2	551.237124	1100.45969	0.39464	0.00021754	2.6535	0.0014627	3.0482	0.0016803	551.2383750948981	67.979	0.64629	67.962	67.672	68.318	-0.016296					39	22	2	0	0	0	0.24913	1	17102	17102		12.532	0	1	394330	+		59961	15501	34417	34418	73181	73181					-0.08651657084897124
YSDDSILQAS	10	Unmodified	_YSDDSILQAS_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.759521484375	2	549.751118	1097.48768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.282	1	78.251	77.751	78.751	-0.030434								0	0	0	0.34897	1	20230	20230		15.248	1.3424	1		+		59962	16529	34418	34419	73182	73182					-0.05716055623815919
YSDEEELLY	9	Unmodified	_YSDEEELLY_					0	0	0		nc|ENSG00000042317|Q9P0W8-3|SPATA7;ENST00000556666.5_1_14:88883017-88904763:+|nuORF;nc|ENSG00000042317|Q9P0W8-2|SPATA7;ENSG00000042317|ENST00000393545|SPATA7	nc|ENSG00000042317|Q9P0W8-3|SPATA7	nc|ENSG00000042317|Q9P0W8-3|SPATA7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2880249023438	2	580.753327	1159.4921	0.59358	0.00034473	-2.0917	-0.0012147	-1.4981	-0.00087001	581.254539841067	75.166	0.26193	75.135	74.922	75.184	-0.031487					13	9	2	0	0	0	0.24913	1	19262	19262		12.532	1.7076	1	100740			59963	610	34419	34420	73183	73183					-0.08126591200880284
YSDTALLI	8	Unmodified	_YSDTALLI_					0	0	0			REV__ENST00000489732.1_1_7:105917445-105925330:-|nuORF	REV__ENST00000489732.1_1_7:105917445-105925330:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	448.2421875	2	448.242201	894.469849	0.18901	8.4723E-05	-0.27119	-0.00012156	-0.082181	-3.6837E-05	448.24203947802897	76.487	0.68145	76.487	76.22	76.902	0					43	24	3	0	0	0	0.2157	1	19713	19713		40.449	0	1	310990	+		59964	14490	34420	34421	73184	73184					0.018392739120145052
YSDTALLI	8	Unmodified	_YSDTALLI_					0	0	0			REV__ENST00000489732.1_1_7:105917445-105925330:-|nuORF	REV__ENST00000489732.1_1_7:105917445-105925330:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	448.2420654296875	2	448.242201	894.469849	0.38966	0.00017466	-0.4225	-0.00018938	-0.03284	-1.472E-05	448.241921640336	76.525	0.89178	76.494	76.263	77.154	-0.031487					45	32	2	0	0	0	0.16192	1	19715	19715		49.669	0	1	356550	+		59965	14490	34420	34421	73185	73185					0.018392739120145052
YSDTALLI	8	Unmodified	_YSDTALLI_					0	0	0			REV__ENST00000489732.1_1_7:105917445-105925330:-|nuORF	REV__ENST00000489732.1_1_7:105917445-105925330:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	448.242201	894.469849	0.18901	8.4723E-05	-0.27119	-0.00012156	-0.082181	-3.6837E-05	448.24203947802897	76.487	0.68145	76.487	76.22	76.902	0	-0.012085	-2.3123E-06	NaN	49.669	43	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310990	+		59966	14490	34420	34421							0.018392739120145052
YSDTLVTIFL	10	Unmodified	_YSDTLVTIFL_					0	0	0			REV__ENST00000423477.2_1_2:74376112-74376253:+|nuORF	REV__ENST00000423477.2_1_2:74376112-74376253:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.2350463867188	2	586.315897	1170.61724	0.099497	5.8337E-05	-2.3887	-0.0014005	-2.2892	-0.0013422	586.314177475754	97.611	0.28861	97.673	97.575	97.863	0.061523					48	33	2	0	0	0	0.318	1	26169	26169		7.2892	2.5332	1	147790	+		59967	20882	34421	34422	73186	73186					0.038757457261453965
YSEIGAIT	8	Unmodified	_YSEIGAIT_					0	0	0		nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3	nc|ENSG00000134775|Q2V2M9-2|FHOD3	nc|ENSG00000134775|Q2V2M9-2|FHOD3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	427.2732849121094	2	427.218726	852.422899	-0.22794	-9.7381E-05	0.009405	4.018E-06	-0.21854	-9.3363E-05	427.21865357700295	69.612	0.56541	69.678	69.428	69.993	0.06604					27	19	2	0	0	0	0.25627	1	17640	17640		46.921	6.4723	1	113500			59968	3812	34422	34423	73187	73187					-0.00921585639150635
YSELLQEIT	9	Unmodified	_YSELLQEIT_					0	0	0		nc|ENSG00000104679|Q9Y3T6-3|R3HCC1;ENSG00000104679|ENST00000265806|R3HCC1	nc|ENSG00000104679|Q9Y3T6-3|R3HCC1	nc|ENSG00000104679|Q9Y3T6-3|R3HCC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.8341674804688	2	548.282054	1094.54956	0.5083	0.00027869	0.042012	2.3034E-05	0.55031	0.00030173	548.2819844379572	68.85	1.0595	68.831	68.458	69.518	-0.019157					69	37	3	0	0	0	0.11234	1	17369	17369		36.506	0	1	313980			59969	1905	34423	34424	73188	73188					0.006062957953190562
YSEMDPKYF	9	Unmodified	_YSEMDPKYF_					0	0	0		nc|ENSG00000185862|P34910-2|EVI2B	nc|ENSG00000185862|P34910-2|EVI2B	nc|ENSG00000185862|P34910-2|EVI2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.2142333984375	2	590.254982	1178.49541	0.84275	0.00049744	1.8049	0.0010653	2.6476	0.0015628	590.2557012465971	78.143	0.51302	78.143	77.902	78.415	0					43	18	3	0	0	0	0.20651	1	20191	20191		26.884	0	1	512730			59970	12882	34424	34425	73189	73189					-0.08669619627903558
YSEMDPKYF	9	Unmodified	_YSEMDPKYF_					0	0	0		nc|ENSG00000185862|P34910-2|EVI2B	nc|ENSG00000185862|P34910-2|EVI2B	nc|ENSG00000185862|P34910-2|EVI2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.2139892578125	2	590.254982	1178.49541	0.68953	0.000407	1.593	0.00094026	2.2825	0.0013473	590.2556278786664	78.048	0.65673	78.106	77.898	78.554	0.058151					51	23	3	0	0	0	0.25066	1	20118	20118		11.64	8.6451	1	447990			59971	12882	34424	34425	73190	73190					-0.08669619627903558
YSEMDPKYF	9	Unmodified	_YSEMDPKYF_					0	0	0		nc|ENSG00000185862|P34910-2|EVI2B	nc|ENSG00000185862|P34910-2|EVI2B	nc|ENSG00000185862|P34910-2|EVI2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.2140502929688	2	590.254982	1178.49541	0.91012	0.0005372	1.6479	0.00097271	2.5581	0.0015099	590.2555057904491	78.161	0.60646	78.131	77.926	78.532	-0.030434					49	22	3	0	0	0	0.2322	1	20172	20172		20.454	0	1	542100			59972	12882	34424	34425	73191	73191					-0.08669619627903558
YSFAFCASHVH	11	Unmodified	_YSFAFCASHVH_					0	0	0		nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;ENSG00000081803|ENST00000449022|CADPS2;nc|ENSG00000163618|Q9ULU8-2|CADPS;nc|ENSG00000163618|Q9ULU8-3|CADPS;ENSG00000163618|ENST00000383710|CADPS;nc|ENSG00000163618|Q9ULU8-4|CADPS	nc|ENSG00000081803|Q86UW7-3|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.7608642578125	2	634.77949	1267.54443	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.982	1	65.982	65.482	66.482	0								0	0	0	0.32811	1	16490	16490		13.042	2.2185	1				59973	1189	34425	34426	73192	73192					-0.07864286548283417
YSFFMPAAK	9	Oxidation (M)	_YSFFM(Oxidation (M))PAAK_		YSFFM(1)PAAK		YSFFM(89)PAAK	0	0	1		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.2575073242188	2	539.257328	1076.5001	0.62883	0.0003391	1.2011	0.0006477	1.8299	0.0009868	539.2573040560559	48.567	0.61724	48.567	48.18	48.798	0					46	21	3	0	0	0	0.004681	1	11138	11138		88.954	44.547	1	816550			59974	3533	34426	34427	73193	73193		447			-0.03508690694457073
YSFFMPAAK	9	Oxidation (M)	_YSFFM(Oxidation (M))PAAK_		YSFFM(1)PAAK		YSFFM(60)PAAK	0	0	1		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2579345703125	2	539.257328	1076.5001	0.73488	0.00039629	0.10499	5.6614E-05	0.83986	0.0004529	539.2572772792148	48.632	0.62301	48.677	48.338	48.961	0.044891					38	22	3	0	0	0	0.03069	1	11154	11154		60.074	24.03	1	731320			59975	3533	34426	34427	73194	73194		447			-0.03508690694457073
YSFFMPAAK	9	Oxidation (M)	_YSFFM(Oxidation (M))PAAK_		YSFFM(1)PAAK		YSFFM(79)PAAK	0	0	1		ENSG00000130985|ENST00000335972|UBA1;nc|ENSG00000130985|P22314-2|UBA1	ENSG00000130985|ENST00000335972|UBA1	ENSG00000130985|ENST00000335972|UBA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.2576293945312	2	539.257328	1076.5001	0.67371	0.0003633	-0.28353	-0.00015289	0.39018	0.00021041	539.257137607327	48.462	0.51844	48.506	48.294	48.812	0.043324					33	18	2	0	0	0	0.010453	1	11092	11092		78.728	34.321	1	673200			59976	3533	34426	34427	73195	73195		447			-0.03508690694457073
YSFHKFHYL	9	Unmodified	_YSFHKFHYL_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.5416259765625	3	414.541586	1240.60293	0.37121	0.00015388	3.481	0.001443	3.8522	0.0015969	414.5415240496179	42.153	1.2314	42.238	41.959	43.19	0.085201					135	44	6	0	0	0	0.0042343	2	9200	9116;9200		83.429	52.725	1	5295400			59977	8471	34427	34428	73196;73197	73197					-0.007748619114863686
YSFHKFHYL	9	Unmodified	_YSFHKFHYL_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.8763427734375	3	414.541586	1240.60293	0.36359	0.00015072	3.708	0.0015371	4.0716	0.0016878	414.54155149449815	42.083	1.1464	42.174	41.896	43.043	0.091362					133	40	6	0	0	0	0.0083926	2	9080	9080;9167		65.474	33.436	1	4476900			59978	8471	34427	34428	73198;73199	73198					-0.007748619114863686
YSFKRLYRL	9	Unmodified	_YSFKRLYRL_					0	0	0		nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000169783|ENST00000355300|LINGO1	nc|ENSG00000169783|Q96FE5-2|LINGO1	nc|ENSG00000169783|Q96FE5-2|LINGO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.8805847167969	3	415.908269	1244.70298	-1.2177	-0.00050644	-1.0301	-0.00042845	-2.2478	-0.00093488	416.24227450304693	34.558	0.42033	34.558	34.472	34.892	0					22	14	2	0	0	0	0.25756	1	6893	6893		2.086	0	1	115180			59979	6388	34428	34429	73200	73200					0.09041375422316378
YSFKRLYRL	9	Unmodified	_YSFKRLYRL_					0	0	0		nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000169783|ENST00000355300|LINGO1	nc|ENSG00000169783|Q96FE5-2|LINGO1	nc|ENSG00000169783|Q96FE5-2|LINGO1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.8812561035156	3	415.908269	1244.70298	-0.24595	-0.00010229	-2.244	-0.00093332	-2.49	-0.0010356	415.90753650033184	34.318	0.55802	34.385	34.268	34.826	0.066704					26	19	2	0	0	0	0.25689	1	6876	6876		7.609	1.4171	1	82451			59980	6388	34428	34429	73201	73201					0.09041375422316378
YSFLKLFLI	9	Unmodified	_YSFLKLFLI_					0	0	0			REV__ENSG00000185000|ENST00000528718|DGAT1	REV__ENSG00000185000|ENST00000528718|DGAT1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.3253784179688	2	572.344261	1142.67397	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.714	1	70.775	70.275	71.275	0.060783								0	0	0	0.22666	1	17930	17930		13.906	4.5229	1		+		59981	18347	34429	34430	73202	73202					0.10833838073313018
YSFSLISLF	9	Unmodified	_YSFSLISLF_					0	0	0		ENST00000458005.2_1_17:9738090-9769219:+|nuORF;ENSG00000065325|ENST00000262441|GLP2R	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7689208984375	2	538.786776	1075.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.551	1	85.551	85.051	86.051	0								0	0	0	0.15265	1	22476	22476		34.102	17.16	1				59982	812	34430	34431	73203	73203					0.024241088715143633
YSFSLISLF	9	Unmodified	_YSFSLISLF_					0	0	0		ENST00000458005.2_1_17:9738090-9769219:+|nuORF;ENSG00000065325|ENST00000262441|GLP2R	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7687377929688	2	538.786776	1075.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.454	1	85.535	85.035	86.035	0.080887								0	0	0	0.15265	1	22440	22440		34.102	14.663	1				59983	812	34430	34431	73204	73204					0.024241088715143633
YSFSLISLF	9	Unmodified	_YSFSLISLF_					0	0	0		ENST00000458005.2_1_17:9738090-9769219:+|nuORF;ENSG00000065325|ENST00000262441|GLP2R	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7689208984375	2	538.786776	1075.559	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.517	1	85.506	85.006	86.006	-0.011444								0	0	0	0.15265	1	22453	22453		34.102	12.356	1				59984	812	34430	34431	73205	73205					0.024241088715143633
YSFSRGMIF	9	Unmodified	_YSFSRGMIF_					0	0	0			REV__ENST00000287996.7_1_9:95414899-95418751:-|nuORF	REV__ENST00000287996.7_1_9:95414899-95418751:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2550659179688	2	554.268227	1106.5219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.672	1	99.665	99.165	100.16	-0.006897								0	0	0	0.24311	1	26689	26689		8.5933	0.68312	1		+		59985	19741	34431	34432	73206	73206					-0.027098859458874358
YSFYMGLSF	9	Unmodified	_YSFYMGLSF_					0	0	0			REV__ENST00000243997.7_1_20:57601245-57601359:-|nuORF	REV__ENST00000243997.7_1_20:57601245-57601359:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.7638549804688	2	557.749336	1113.48412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.171	1	72.227	71.727	72.727	0.056572								0	0	0	0.22065	1	18375	18375		15.847	1.0089	1		+		59986	19496	34432	34433	73207	73207					-0.06808396931364769
YSGDALYELF	10	Unmodified	_YSGDALYELF_					0	0	0		ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.764892578125	2	589.274229	1176.53391	0.42908	0.00025285	1.5148	0.00089265	1.9439	0.0011455	589.2747704396643	76.841	0.50149	76.841	76.559	77.06	0					28	18	2	0	0	0	0.30958	1	19833	19833		19.257	1.122	1	159180			59987	7040	34433	34434	73208	73208					-0.04729990721716604
YSGKKLTELF	10	Unmodified	_YSGKKLTELF_					0	0	0			REV__nc|ENSG00000188878|Q8TES7|FBF1	REV__nc|ENSG00000188878|Q8TES7|FBF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.7171630859375	2	593.329339	1184.64412	0.37954	0.00022519	-1.7795	-0.0010558	-1.4	-0.00083065	593.829375671211	98.119	0.051048	98.112	98.089	98.141	-0.0068283					6	5	2	0	0	0	0.31482	1	26281	26281		7.2892	2.0586	1	161780	+		59988	18578	34434	34435	73209	73209					0.05918854337301127
YSGLILGFPC	10	Unmodified	_YSGLILGFPC_					0	0	0			REV__ENSG00000206474|ENST00000444197|OR10C1	REV__ENSG00000206474|ENST00000444197|OR10C1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.8102416992188	2	535.272978	1068.5314	0.29696	0.00015895	-3.0783	-0.0016477	-2.7813	-0.0014888	535.2715111525885	33.623	0.24808	33.69	33.522	33.77	0.0667					14	8	2	0	0	0	0.31165	1	6544	6544		15.847	2.8047	1	116820	+		59989	19019	34435	34436	73210	73210					-0.0001211766034430184
YSGPLVPKF	9	Unmodified	_YSGPLVPKF_					0	0	0			REV__nc|ENSG00000164651|Q8IXZ3-2|SP8	REV__nc|ENSG00000164651|Q8IXZ3-2|SP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.2924499511719	2	504.28166	1006.54877	0.17885	9.0192E-05	-0.7187	-0.00036243	-0.53985	-0.00027224	504.28078048303706	76.522	1.0436	76.575	76.135	77.178	0.053421					65	36	2	0	0	0	0.24913	1	19849	19849		12.532	0.89125	1	260100	+		59990	17170	34436	34437	73211	73211					0.045755459369502205
YSGSFNFEY	9	Unmodified	_YSGSFNFEY_					0	0	0		ENST00000426654.6_1_16:69732095-69732185:+|nuORF	ENST00000426654.6_1_16:69732095-69732185:+|nuORF	ENST00000426654.6_1_16:69732095-69732185:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.7355346679688	2	557.229822	1112.44509	0.45819	0.00025532	-3.8349	-0.0021369	-3.3767	-0.0018816	557.2270807293224	83.416	0.24822	83.399	83.314	83.563	-0.016823					14	8	3	0	0	0	0.25938	1	21819	21819		4.3292	0.38484	1	83456			59991	10421	34437	34438	73212	73212					-0.10663405961372519
YSGSFNFEY	9	Unmodified	_YSGSFNFEY_					0	0	0		ENST00000426654.6_1_16:69732095-69732185:+|nuORF	ENST00000426654.6_1_16:69732095-69732185:+|nuORF	ENST00000426654.6_1_16:69732095-69732185:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	557.229822	1112.44509	0.58937	0.00032841	-5.045	-0.0028112	-4.4556	-0.0024828	557.2264239673094	83.421	0.23726	83.421	83.321	83.558	0	-0.042275	-0.0008745	NaN	4.3292	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63608			59992	10421	34437	34438							-0.10663405961372519
YSGSFNFEY	9	Unmodified	_YSGSFNFEY_					0	0	0		ENST00000426654.6_1_16:69732095-69732185:+|nuORF	ENST00000426654.6_1_16:69732095-69732185:+|nuORF	ENST00000426654.6_1_16:69732095-69732185:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	557.229822	1112.44509	0.49584	0.0002763	-5.8903	-0.0032823	-5.3945	-0.003006	557.7291498810143	83.493	0.10927	83.57	83.514	83.623	0.077095	0.10653	-0.0018166	NaN	4.3292	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36159			59993	10421	34437	34438							-0.10663405961372519
YSHEDVCVF	9	Unmodified	_YSHEDVCVF_					0	0	0		nc|ENSG00000142453|Q86X55-2|CARM1;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1	nc|ENSG00000142453|Q86X55-2|CARM1	nc|ENSG00000142453|Q86X55-2|CARM1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3052978515625	2	549.731674	1097.4488	0.44575	0.00024504	-4.0216	-0.0022108	-3.5759	-0.0019658	549.7261052508827	66.84	0.69491	66.924	66.494	67.188	0.083832					55	24	3	0	0	0	0.15464	1	16716	16716		30.225	14.378	1	202560			59994	4442	34438	34439	73213	73213					-0.09603059459186625
YSHPHVRLL	9	Unmodified	_YSHPHVRLL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L3673Pfs*5|1|0.33|ENSG00000112159|chr6:89689875-89689876|-/G|frameshift_variant	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.7662353515625	2	561.314358	1120.61416	0.48401	0.00027168	3.0581	0.0017165	3.5421	0.0019882	561.3154843047181	32.13	0.73288	32.13	31.9	32.633	0					59	26	3	0	0	0	0.24311	1	6179	6179		16.942	3.0362	1	668250			59995	2416	34439	34440	73214	73214					0.05867960182672505
YSHPHVRLL	9	Unmodified	_YSHPHVRLL_					0	0	0		ENSG00000112159|ENST00000369393|MDN1;MDN1|p.L3673Pfs*5|1|0.33|ENSG00000112159|chr6:89689875-89689876|-/G|frameshift_variant	ENSG00000112159|ENST00000369393|MDN1	ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.76708984375	2	561.314358	1120.61416	0.29561	0.00016593	3.7559	0.0021082	4.0515	0.0022742	561.8179712581863	32.017	0.80325	32.058	31.949	32.752	0.040989					62	28	3	0	0	0	0.24311	1	6053	6053		11.64	3.047	1	948920			59996	2416	34439	34440	73215	73215					0.05867960182672505
YSICLQLARF	10	Unmodified	_YSICLQLARF_					0	0	0		ENSG00000162402|ENST00000294383|USP24;USP24|p.Y2252Ifs*5|1|0.16|ENSG00000162402|chr1:55085953-55085953|A/-|frameshift_variant	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.783203125	2	607.323534	1212.63251	0.66249	0.00040234	1.5088	0.00091632	2.1713	0.0013187	607.3241045710059	54.201	0.76986	54.264	54.035	54.805	0.063202					60	28	3	0	0	0	0.31433	1	12897	12897		12.241	0	1	1178500			59997	5566	34440	34441	73216	73216					0.034703340423448026
YSIKKWLLT	9	Unmodified	_YSIKKWLLT_					0	0	0			REV__ENSG00000154511|ENST00000370310|DIPK1A	REV__ENSG00000154511|ENST00000370310|DIPK1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.8438110351562	2	576.344792	1150.67503	0.3842	0.00022143	0.74382	0.00042869	1.128	0.00065013	576.3455960962183	87.926	0.49389	87.926	87.765	88.259	0					35	23	2	0	0	0	0.25526	1	23295	23295		7.9102	3.1541	1	112900	+		59998	16670	34441	34442	73217	73217					0.10572052442216773
YSIKKWLLT	9	Unmodified	_YSIKKWLLT_					0	0	0			REV__ENSG00000154511|ENST00000370310|DIPK1A	REV__ENSG00000154511|ENST00000370310|DIPK1A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	576.344792	1150.67503	0.33023	0.00019033	0.25784	0.0001486	0.58807	0.00033893	576.3448910598125	88.037	0.19684	88.034	87.934	88.131	-0.0028381	0.05424	-0.00037352	NaN	7.9102	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116850	+		59999	16670	34441	34442							0.10572052442216773
YSILESHSF	9	Unmodified	_YSILESHSF_					0	0	0		ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7633666992188	2	541.761289	1081.50803	0.68488	0.00037104	1.8231	0.00098771	2.508	0.0013588	541.762330226585	82.834	1.1237	82.834	82.197	83.321	0					48	22	3	0	0	0	0.22188	2	21673	21673;21722		20.454	3.5113	1	322820			60000	1617	34442	34443	73218;73219	73218					-0.02946840173331111
YSILESHSF	9	Unmodified	_YSILESHSF_					0	0	0		ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7618408203125	2	541.761289	1081.50803	0.6386	0.00034597	1.8899	0.0010239	2.5285	0.0013698	541.7623446049944	82.832	0.72201	82.905	82.705	83.427	0.073097					50	27	3	0	0	0	0.088391	1	21616	21616		39.957	18.42	1	447230			60001	1617	34442	34443	73220	73220					-0.02946840173331111
YSILRIFL	8	Unmodified	_YSILRIFL_					0	0	0		Kanga1a_dup190|chr3:122931412-122932088:-|1.1925051787970715|0.0473760592186005|4.65|529.0|22|3|sense	Kanga1a_dup190|chr3:122931412-122932088:-|1.1925051787970715|0.0473760592186005|4.65|529.0|22|3|sense	Kanga1a_dup190|chr3:122931412-122932088:-|1.1925051787970715|0.0473760592186005|4.65|529.0|22|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	512.7711791992188	2	512.813128	1023.6117	0.45115	0.00023136	-0.69762	-0.00035775	-0.24647	-0.00012639	512.8125363345482	76.858	0.17628	76.827	76.754	76.93	-0.031334					9	6	2	0	0	0	0.34218	1	19794	19794		9.3474	7.0447	1	58503			60002	12430	34443	34444	73221	73221					0.10084111724984268
YSIPLVQLF	9	Unmodified	_YSIPLVQLF_					0	0	0		ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-3|LTN1	ENSG00000198862|ENST00000361371|LTN1	ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.310546875	2	540.310418	1078.60628	0.53715	0.00029023	-0.0010142	-5.4797E-07	0.53614	0.00028968	540.3104813193213	89.687	0.33067	89.777	89.529	89.859	0.090561					59	26	3	0	0	0	0.2322	1	23720	23720		20.454	3.5113	1	197100			60003	8145	34444	34445	73222	73222					0.07012388142516102
YSIRITLTLA	10	Unmodified	_YSIRITLTLA_					0	0	0		ENSG00000145888|ENST00000274576|GLRA1;nc|ENSG00000145888|P23415|GLRA1	ENSG00000145888|ENST00000274576|GLRA1	ENSG00000145888|ENST00000274576|GLRA1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8431396484375	2	575.845156	1149.67576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.829	1	86.917	86.417	87.417	0.08709								0	0	0	0.37044	1	22862	22862		6.2058	1.4498	1				60004	4678	34445	34446	73223	73223					0.10690847091291289
YSIRPLIV	8	Unmodified	_YSIRPLIV_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.7976379394531	2	480.797478	959.580402	0.17533	8.4299E-05	0.027778	1.3355E-05	0.20311	9.7655E-05	480.7973987072092	57.771	0.71691	57.771	57.552	58.269	0					52	25	3	0	0	0	0.16041	2	13972	13972;14019		49.933	9.9757	1	693260			60005	1468	34446	34447	73224;73225	73224					0.0989953869089959
YSIRPLIV	8	Unmodified	_YSIRPLIV_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	480.7974548339844	2	480.797478	959.580402	0.27175	0.00013065	0.017135	8.2383E-06	0.28888	0.00013889	480.79737872875035	57.618	0.69781	57.703	57.465	58.162	0.085617					54	25	3	0	0	0	0.16041	2	13917	13917;14017		49.933	9.9757	1	834730			60006	1468	34446	34447	73226;73227	73226					0.0989953869089959
YSIRPLIV	8	Unmodified	_YSIRPLIV_					0	0	0		ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	480.79754638671875	2	480.797478	959.580402	0.218	0.00010482	0.035679	1.7154E-05	0.25368	0.00012197	480.79737646708884	57.767	0.80506	57.75	57.523	58.329	-0.017197					52	29	3	0	0	0	0.11046	2	13971	13971;14028		58.679	18.721	1	735460			60007	1468	34446	34447	73228;73229	73228					0.0989953869089959
YSISSTLNP	9	Unmodified	_YSISSTLNP_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10;ENST00000540269.6_1_16:84778297-84793504:+|nuORF	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.23486328125	2	491.248015	980.481476	0.16511	8.111E-05	-0.3479	-0.00017091	-0.18279	-8.9797E-05	491.24771848140557	69.492	1.2948	69.492	69.006	70.301	0					101	46	3	0	0	0	0.037693	1	17524	17524		57.471	23.369	1	2521700			60008	1815	34447	34448	73230	73230					-0.009545290646542526
YSITRGEYL	9	Unmodified	_YSITRGEYL_					0	0	0			REV__ENSG00000176547|ENST00000319856|OR4C3	REV__ENSG00000176547|ENST00000319856|OR4C3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.26611328125	2	551.282389	1100.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.238	1	77.238	76.738	77.738	0								0	0	0	0.20639	1	19927	19927		20.454	1.1966	1		+		60009	17943	34448	34449	73231	73231					0.003971352350617963
YSIVAGVFV	9	Unmodified	_YSIVAGVFV_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENST00000562209.1_1_16:88713507-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7502746582031	2	477.768386	953.522219	0.58191	0.00027802	-0.55016	-0.00026285	0.031751	1.517E-05	477.7677413223397	78.223	0.55273	78.223	78.033	78.586	0					40	20	3	0	0	0	0.089551	1	20234	20234		53.576	23.351	1	364480			60010	670	34449	34450	73232	73232					0.043598570456197194
YSIVAGVFV	9	Unmodified	_YSIVAGVFV_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENST00000562209.1_1_16:88713507-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.75018310546875	2	477.768386	953.522219	0.75506	0.00036075	-1.0103	-0.0004827	-0.25526	-0.00012195	477.7676400640171	78.285	0.47066	78.255	78.062	78.532	-0.030434					32	17	3	0	0	0	0.12846	1	20219	20219		36.044	11.37	1	366760			60011	670	34449	34450	73233	73233					0.043598570456197194
YSKGRKKRQ	9	Unmodified	_YSKGRKKRQ_					0	0	0			REV__ENST00000367434.4_1_1:193155339-193155666:-|nuORF	REV__ENST00000367434.4_1_1:193155339-193155666:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.8434448242188	2	575.843813	1149.67307	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.264	1	86.348	85.848	86.848	0.084251								0	0	0	0.25631	1	22688	22688		4.3292	0.73274	1		+		60012	20312	34450	34451	73234	73234					0.10422436476960684
YSKKLYAIF	9	Unmodified	_YSKKLYAIF_					0	0	0			REV__ENST00000448560.1_1_X:144258105-144258411:+|nuORF	REV__ENST00000448560.1_1_X:144258105-144258411:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.8056640625	2	566.823692	1131.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.825	1	55.806	55.306	56.306	-0.019081								0	0	0	0.22065	1	13353	13353		15.847	0.5987	1		+		60013	21097	34451	34452	73235	73235					0.07228077033846603
YSKQVGFLF	9	Unmodified	_YSKQVGFLF_					0	0	0		nc|ENSG00000174799|Q66GS9-2|CEP135	nc|ENSG00000174799|Q66GS9-2|CEP135	nc|ENSG00000174799|Q66GS9-2|CEP135	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.31689453125	2	544.792392	1087.57023	0.71004	0.00038682	0.42005	0.00022884	1.1301	0.00061566	544.7919150057198	82.518	1.3796	82.591	82.332	83.712	0.073097					94	53	2	0	0	0	0.1524	1	21487	21487		25.399	0	1	162750			60014	12846	34452	34453	73236	73236					0.0299493096565584
YSKRLITF	8	Unmodified	_YSKRLITF_					0	0	0		ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;TRIM33|p.M845Nfs*3|1|0.32|ENSG00000197323|chr1:114405644-114405645|-/T|frameshift_variant	ENSG00000197323|ENST00000358465|TRIM33	ENSG00000197323|ENST00000358465|TRIM33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	514.7705688476562	2	514.300384	1026.58622	0.28153	0.00014479	-3.0045	-0.0015452	-2.723	-0.0014004	514.2990325061874	88.179	0.099442	88.176	88.108	88.208	-0.0028381					7	5	2	0	0	0	0.34319	1	23251	23251		5.7604	1.0044	1	54180			60015	7953	34453	34454	73237	73237					0.07398637202550162
YSLAKLVKGYN	11	Unmodified	_YSLAKLVKGYN_					0	0	0		chr2:69789926-69790680|323|10.1|0.0|19.95|-|2|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|13	chr2:69789926-69790680|323|10.1|0.0|19.95|-|2|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|13	chr2:69789926-69790680|323|10.1|0.0|19.95|-|2|TE_info:LTR25-int,LTR25-int_dup24,ERV1,LTR,donor,-,69790680,69792971|SMANTIS,None|13	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.3008422851562	2	628.355888	1254.69722	0.33743	0.00021202	0.16609	0.00010436	0.50352	0.00031639	628.3560577073339	67.008	0.76651	67.008	66.744	67.51	0					77	26	4	0	0	0	0.40332	1	16907	16907		10.8	2.0541	1	1423100			60016	153	34454	34455	73238	73238					0.08006232120010282
YSLDEIHTE	9	Unmodified	_YSLDEIHTE_					0	0	0		nc|ENSG00000164616|Q9UKT6|FBXL21P	nc|ENSG00000164616|Q9UKT6|FBXL21P	nc|ENSG00000164616|Q9UKT6|FBXL21P	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.7531127929688	2	553.753661	1105.49277	0.53298	0.00029514	-2.3726	-0.0013138	-1.8396	-0.0010187	553.7530118816953	85.933	1.0867	85.933	85.484	86.571	0					67	42	2	0	0	0	0.2451	1	22578	22578		15.847	1.2655	1	796080			60017	12805	34455	34456	73239	73239					-0.05575751761216452
YSLDVPKLF	9	Unmodified	_YSLDVPKLF_					0	0	0		ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.30078125	2	541.30005	1080.58555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.037	1	86.037	85.537	86.537	0								0	0	0	0.14428	1	22627	22627		36.044	7.5574	1				60018	7231	34456	34457	73240	73240					0.04847797762840855
YSLEEVTHE	9	Unmodified	_YSLEEVTHE_					0	0	0		ENST00000529111.5_1_11:83344252-84634162:-|nuORF;nc|ENSG00000150672|Q15700-3|DLG2;nc|ENSG00000150672|Q15700|DLG2;nc|ENSG00000150672|Q15700-4|DLG2;ENSG00000150672|ENST00000376104|DLG2	ENST00000529111.5_1_11:83344252-84634162:-|nuORF	ENST00000529111.5_1_11:83344252-84634162:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.2503051757812	2	553.753661	1105.49277	0.48576	0.00026899	-2.5203	-0.0013956	-2.0346	-0.0011266	553.7529300789121	85.904	1.0468	85.895	85.407	86.454	-0.0090027					67	39	2	0	0	0	0.14076	1	22657	22657		32.305	5.4218	1	779840			60019	4921	34457	34458	73241	73241					-0.05575751761170977
YSLELFHSR	9	Unmodified	_YSLELFHSR_					0	0	0		ENST00000521687.5_1_7:27162261-27168026:+|nuORF	ENST00000521687.5_1_7:27162261-27168026:+|nuORF	ENST00000521687.5_1_7:27162261-27168026:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	576.2945556640625	2	576.29583	1150.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.165	1	74.135	73.635	74.635	-0.030655								0	0	0	0.22377	1	18978	18978		14.838	2.5976	1				60020	11493	34458	34459	73242	73242					0.007842438462375867
YSLEYFQF	8	Unmodified	_YSLEYFQF_					0	0	0		ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF	ENSG00000114374|ENST00000338981|USP9Y	ENSG00000114374|ENST00000338981|USP9Y	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.7525024414062	2	548.752933	1095.49131	0.64294	0.00035281	-1.5143	-0.00083096	-0.87133	-0.00047815	548.752152036726	83.1	0.8063	83.173	82.928	83.734	0.073097					69	30	3	0	0	0	0.3474	1	21713	21713		25.399	1.3787	1	703870			60021	2560	34459	34460	73243	73243					-0.052613410592812215
YSLFKDGIEP	10	Unmodified	_YSLFKDGIEP_					0	0	0		ENST00000507665.5_1_4:99808220-99850263:-|nuORF;ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E	ENST00000507665.5_1_4:99808220-99850263:-|nuORF	ENST00000507665.5_1_4:99808220-99850263:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	584.3563842773438	2	584.797872	1167.58119	0.32318	0.000189	0.20315	0.0001188	0.52633	0.0003078	584.7981879541056	79.835	0.42316	79.835	79.612	80.035	0					33	15	3	0	0	0	0.31847	1	20681	20681		6.7232	6.7232	1	177660			60022	4949	34460	34461	73244	73244					0.0041028854927844804
YSLGKMKK	8	Unmodified	_YSLGKMKK_					0	0	0			REV__nc|ENSG00000127328|Q96QF0-6|RAB3IP	REV__nc|ENSG00000127328|Q96QF0-6|RAB3IP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.250244140625	2	477.775688	953.536823	0.10158	4.8532E-05	3.6235	0.0017312	3.7251	0.0017798	477.7771491641027	16.005	0.28659	15.942	15.808	16.094	-0.062533					12	9	2	0	0	0	0.344	1	1236	1236		2.5775	0	1	25544	+		60023	22983	34461	34462	73245	73245					0.05819605922113169
YSLGSNKGRWE	11	Unmodified	_YSLGSNKGRWE_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	648.7841186523438	2	648.820201	1295.62585	0.24686	0.00016017	0.39364	0.0002554	0.6405	0.00041557	648.8204278990939	60.33	0.29007	60.319	60.168	60.459	-0.011486					16	10	2	0	0	0	0.32736	1	14742	14742		12.241	0	1	237880			60024	8011	34462	34463	73246	73246					-0.010138875846678275
YSLIGPLIT	9	Unmodified	_YSLIGPLIT_					0	0	0			REV__PRDM4|p.A175Cfs*8|1|0.37|ENSG00000110851|chr12:107752019-107752020|-/C|frameshift_variant	REV__PRDM4|p.A175Cfs*8|1|0.37|ENSG00000110851|chr12:107752019-107752020|-/C|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.78948974609375	2	488.789318	975.564084	0.36088	0.00017639	-0.30159	-0.00014741	0.059287	2.8979E-05	488.7891579827514	86.836	1.0126	86.923	86.63	87.643	0.08709					61	43	2	0	0	0	0.25989	1	22907	22907		14.838	0	1	657650	+		60025	14686	34463	34464	73247	73247					0.075324127341446
YSLIYSSIT	9	Unmodified	_YSLIYSSIT_					0	0	0		ENST00000370751.9_1_1:79107755-79107812:+|nuORF	ENST00000370751.9_1_1:79107755-79107812:+|nuORF	ENST00000370751.9_1_1:79107755-79107812:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.2332153320312	2	523.773865	1045.53318	0.42916	0.00022478	-0.73138	-0.00038308	-0.30222	-0.00015829	523.7735580947897	75.389	0.61435	75.389	75.097	75.711	0					37	21	2	0	0	0	0.28674	1	19281	19281		10.824	0	1	303310			60026	9805	34464	34465	73248	73248					0.012232146292262769
YSLLDICLN	9	Unmodified	_YSLLDICLN_					0	0	0		ZYG11B|p.M375Rfs*16|1|0.23|ENSG00000162378|chr1:52784908-52784908|T/-|frameshift_variant;ENSG00000162378|ENST00000294353|ZYG11B	ZYG11B|p.M375Rfs*16|1|0.23|ENSG00000162378|chr1:52784908-52784908|T/-|frameshift_variant	ZYG11B|p.M375Rfs*16|1|0.23|ENSG00000162378|chr1:52784908-52784908|T/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.3028564453125	2	527.267893	1052.52123	0.39778	0.00020974	-2.8949	-0.0015264	-2.4971	-0.0013166	527.2664677577052	66.988	0.30337	67.072	66.852	67.156	0.083832					17	10	2	0	0	0	0.19839	1	16778	16778		28.487	5.7506	1	143230			60027	5563	34465	34466	73249	73249					-0.0029272538561144756
YSLLGCLL	8	Unmodified	_YSLLGCLL_					0	0	0			REV__ENST00000544751.1_1_12:10205211-10205388:+|nuORF	REV__ENST00000544751.1_1_12:10205211-10205388:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	441.243408203125	2	441.243689	880.472826	0.10637	4.6936E-05	0.4321	0.00019066	0.53848	0.0002376	441.2447112546315	74.649	1.7012	74.702	74.459	76.16	0.052361					88	61	3	0	0	0	0.2157	2	19116	19116;19173		40.449	0	1	436700	+		60028	22159	34466	34467	73250;73251	73250					0.027808257651599888
YSLLGCLL	8	Unmodified	_YSLLGCLL_					0	0	0			REV__ENST00000544751.1_1_12:10205211-10205388:+|nuORF	REV__ENST00000544751.1_1_12:10205211-10205388:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.2436828613281	2	441.243689	880.472826	0.40878	0.00018037	-1.1537	-0.00050907	-0.74493	-0.0003287	441.24321853574145	74.704	0.67265	74.672	74.387	75.059	-0.031487					44	23	3	0	0	0	0.2157	1	19126	19126		40.449	0	1	369280	+		60029	22159	34466	34467	73252	73252					0.027808257651599888
YSLLRTSLL	9	Unmodified	_YSLLRTSLL_					0	0	0			REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.30859375	2	533.318774	1064.623	0.52542	0.00028021	0.75966	0.00040514	1.2851	0.00068535	533.3191044796649	62.236	0.66675	62.236	62.022	62.689	0					42	24	2	0	0	0	0.19083	1	15340	15340		24.991	3.454	1	539250	+		60030	15008	34467	34468	73253	73253					0.09326889028466212
YSLLRTSLL	9	Unmodified	_YSLLRTSLL_					0	0	0			REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.3085327148438	2	533.318774	1064.623	0.251	0.00013386	1.2372	0.00065984	1.4882	0.0007937	533.3192633373435	62.167	0.57283	62.264	62.03	62.603	0.096985					36	20	2	0	0	0	0.19747	1	15257	15257		24.021	9.1823	1	411970	+		60031	15008	34467	34468	73254	73254					0.09326889028466212
YSLLRTSLL	9	Unmodified	_YSLLRTSLL_					0	0	0			REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	REV__nc|ENSG00000118307|Q6TDU7-4|DNAI7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.3082885742188	2	533.318774	1064.623	0.49111	0.00026192	0.85785	0.00045751	1.349	0.00071943	533.3190643480857	62.205	0.60805	62.197	62.067	62.675	-0.0085526					36	22	2	0	0	0	0.21447	1	15329	15329		21.537	1.1224	1	303370	+		60032	15008	34467	34468	73255	73255					0.09326889028466212
YSLQEITL	8	Unmodified	_YSLQEITL_					0	0	0			REV__nc|ENSG00000101040|Q9ULU4-12|ZMYND8;REV__ENST00000468376.2_1_20:45867286-45947776:-|nuORF	REV__nc|ENSG00000101040|Q9ULU4-12|ZMYND8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.30206298828125	2	483.760758	965.506963	0.034014	1.6454E-05	-0.74562	-0.0003607	-0.71161	-0.00034425	483.76023381207636	69.555	0.61037	69.555	69.285	69.895	0					40	21	3	0	0	0	0.038653	1	17627	17627		60.074	6.2411	1	369020	+		60033	22915;21323	34468	34469	73256	73256					0.02282945457761798
YSLQEITL	8	Unmodified	_YSLQEITL_					0	0	0			REV__nc|ENSG00000101040|Q9ULU4-12|ZMYND8;REV__ENST00000468376.2_1_20:45867286-45947776:-|nuORF	REV__nc|ENSG00000101040|Q9ULU4-12|ZMYND8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.3018493652344	2	483.760758	965.506963	0.090147	4.361E-05	-0.30018	-0.00014521	-0.21003	-0.0001016	483.7605366801857	69.546	0.70613	69.612	69.395	70.101	0.06604					35	24	2	0	0	0	0.092646	1	17601	17601		62.573	5.1013	1	305640	+		60034	22915;21323	34468	34469	73257	73257					0.02282945457761798
YSLQEITL	8	Unmodified	_YSLQEITL_					0	0	0			REV__nc|ENSG00000101040|Q9ULU4-12|ZMYND8;REV__ENST00000468376.2_1_20:45867286-45947776:-|nuORF	REV__nc|ENSG00000101040|Q9ULU4-12|ZMYND8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.30218505859375	2	483.760758	965.506963	0.1799	8.7026E-05	-0.49944	-0.00024161	-0.31955	-0.00015458	483.76046583000544	69.564	0.61336	69.542	69.324	69.937	-0.022087					33	22	2	0	0	0	0.12959	1	17608	17608		74.929	0	1	242980	+		60035	22915;21323	34468	34469	73258	73258					0.02282945457761798
YSLSEPAPL	9	Unmodified	_YSLSEPAPL_					0	0	0		nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000204352|Q5T035|FAM120A2P	nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-6|FAM120A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.341796875	2	488.752933	975.491313	0.40158	0.00019627	-1.2941	-0.00063252	-0.89257	-0.00043624	488.7523452554014	65.639	0.53604	65.728	65.519	66.055	0.088882					34	19	2	0	0	0	0.2322	1	16356	16356		20.454	0	1	365230			60036	12572	34469	34470	73259	73259					0.0025865894069738715
YSLSMCVK	8	Unmodified	_YSLSMCVK_					0	0	0		ENST00000314970.10_1_4:185580560-185587128:+|nuORF	ENST00000314970.10_1_4:185580560-185587128:+|nuORF	ENST00000314970.10_1_4:185580560-185587128:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.16143798828125	2	465.724806	929.43506	-0.1133	-5.2766E-05	0.48865	0.00022758	0.37536	0.00017481	465.7250113066601	24.846	0.49934	24.814	24.627	25.126	-0.031408					24	16	2	0	0	0	0.34247	1	3833	3833		4.756	4.756	1	41303			60037	9350	34470	34471	73260	73260					-0.032480084919598085
YSLSPDNHLE	10	Unmodified	_YSLSPDNHLE_					0	0	0		nc|ENSG00000144331|Q569K4-5|ZNF385B;ENSG00000144331|ENST00000410066|ZNF385B	nc|ENSG00000144331|Q569K4-5|ZNF385B	nc|ENSG00000144331|Q569K4-5|ZNF385B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.7705688476562	2	587.772385	1173.53022	0.41176	0.00024202	-3.2634	-0.0019181	-2.8517	-0.0016761	587.7703704268207	71.477	0.8671	71.477	71.209	72.076	0					46	30	2	0	0	0	0.24359	1	18194	18194		38.176	9.094	1	986170			60038	4576	34471	34472	73261	73261					-0.049606604955670264
YSLSPDNHLE	10	Unmodified	_YSLSPDNHLE_					0	0	0		nc|ENSG00000144331|Q569K4-5|ZNF385B;ENSG00000144331|ENST00000410066|ZNF385B	nc|ENSG00000144331|Q569K4-5|ZNF385B	nc|ENSG00000144331|Q569K4-5|ZNF385B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.770751953125	2	587.772385	1173.53022	0.45748	0.00026889	-2.8342	-0.0016659	-2.3767	-0.001397	587.7706267475659	71.581	0.82893	71.554	71.288	72.117	-0.027275					50	29	2	0	0	0	0.2623	1	18208	18208		26.268	0	1	1360700			60039	4576	34471	34472	73262	73262					-0.049606604955670264
YSLSSAHKV	9	Unmodified	_YSLSSAHKV_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF;ENST00000468530.1_1_2:46608783-46611619:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2644958496094	2	496.263999	990.513445	0.28437	0.00014112	0.6399	0.00031756	0.92427	0.00045868	496.26408597456253	23.968	0.42451	23.968	23.769	24.194	0					25	14	2	0	0	0	0.19083	1	3608	3608		24.991	13.351	1	94620			60040	2697	34472	34473	73263	73263					0.01780883409139733
YSLSSAHKV	9	Unmodified	_YSLSSAHKV_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF;ENST00000468530.1_1_2:46608783-46611619:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.26507568359375	2	496.263999	990.513445	0.38434	0.00019074	0.63255	0.00031391	1.0169	0.00050465	496.2640889483984	24.184	0.50686	24.111	23.852	24.359	-0.072559					29	16	2	0	0	0	0.073988	1	3669	3669		43.982	26.869	1	98253			60041	2697	34472	34473	73264	73264					0.01780883409139733
YSLSSAHKV	9	Unmodified	_YSLSSAHKV_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF;ENST00000468530.1_1_2:46608783-46611619:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2642822265625	2	496.263999	990.513445	0.34519	0.00017131	0.92406	0.00045858	1.2693	0.00062989	496.2640976996156	24.171	0.51445	24.132	23.878	24.392	-0.038927					31	17	2	0	0	0	0.19083	1	3662	3662		24.991	10.153	1	103130			60042	2697	34472	34473	73265	73265					0.01780883409139733
YSLSSILTL	9	Unmodified	_YSLSSILTL_					0	0	0		CON__Q05B55	CON__Q05B55	CON__Q05B55	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.7820129394531	2	498.784233	995.553913	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.342	1	77.342	76.842	77.842	0								0	0	0	0.19013	1	19959	19959		25.399	0	1			+	60043	222	34473	34474	73266	73266					0.05595805008897514
YSLSSTLTL	9	Unmodified	_YSLSSTLTL_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	492.76629638671875	2	492.76604	983.517527	0.20544	0.00010123	-0.32839	-0.00016182	-0.12295	-6.0585E-05	492.76611762614954	69.603	1.8405	69.603	69.229	71.07	0					198	66	5	0	0	0	2.6052E-17	5	17641	17541;17591;17641;17684;17734		223.6	149.18	1	22174000			60044	12919	34474	34475	73267;73268;73269;73270;73271	73269					0.02510928112201327
YSLSSTLTL	9	Unmodified	_YSLSSTLTL_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	492.76617431640625	2	492.76604	983.517527	0.23923	0.00011789	-0.27606	-0.00013603	-0.036824	-1.8146E-05	492.7661495559356	69.531	1.9228	69.597	69.151	71.074	0.06604					198	68	5	0	0	0	2.6052E-17	5	17571	17527;17571;17610;17655;17697		223.6	141.99	1	20820000			60045	12919	34474	34475	73272;73273;73274;73275;73276	73273					0.02510928112201327
YSLSSTLTL	9	Unmodified	_YSLSSTLTL_					0	0	0		nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	nc|ENSG00000211592|P01834|IGKC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	492.765869140625	2	492.76604	983.517527	0.25483	0.00012557	-0.31577	-0.0001556	-0.060941	-3.003E-05	492.7660659974666	69.62	1.792	69.598	69.209	71.001	-0.022087					200	64	5	0	0	0	2.0431E-11	5	17546	17546;17594;17643;17691;17737		196.65	115.04	1	18932000			60046	12919	34474	34475	73277;73278;73279;73280;73281	73277					0.02510928112201327
YSLSSVVTV	9	Unmodified	_YSLSSVVTV_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211897|P01860|IGHG3;ENST00000390555.3_1_14:106135325-106136152:-|nuORF	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.7608947753906	2	477.760758	953.506963	0.40296	0.00019252	0.29726	0.00014202	0.70022	0.00033454	477.76065144437064	65.826	3.1346	65.826	63.859	66.994	0					163	113	2	0	0	0	2.6052E-17	4	16431	16385;16431;16480;16535		223.6	52.137	1	7047600			60047	12934	34475	34476	73282;73283;73284;73285	73283					0.0283494545776648
YSLSSVVTV	9	Unmodified	_YSLSSVVTV_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211897|P01860|IGHG3;ENST00000390555.3_1_14:106135325-106136152:-|nuORF	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.7609558105469	2	477.760758	953.506963	0.34703	0.0001658	0.53436	0.0002553	0.88139	0.00042109	477.76070413133823	65.652	4.3101	65.741	63.869	68.18	0.088882					205	156	2	0	0	0	1.8572E-16	3	16383	16342;16383;16425		205.38	49.229	1	7347400			60048	12934	34475	34476	73286;73287;73288	73287					0.0283494545776648
YSLSSVVTV	9	Unmodified	_YSLSSVVTV_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211897|P01860|IGHG3;ENST00000390555.3_1_14:106135325-106136152:-|nuORF	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.7608642578125	2	477.760758	953.506963	0.38731	0.00018504	0.40171	0.00019192	0.78902	0.00037696	477.7606725133938	65.793	2.7893	65.782	64.86	67.649	-0.011337					210	100	5	0	0	0	2.6052E-17	3	16459	16367;16415;16459		223.6	52.137	1	6746800			60049	12934	34475	34476	73289;73290;73291	73291					0.0283494545776648
YSLSTLLYGF	10	Unmodified	_YSLSTLLYGF_					0	0	0			REV__ENST00000379715.9_1_6:8079668-8079923:-|nuORF	REV__ENST00000379715.9_1_6:8079668-8079923:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.3033447265625	2	582.30279	1162.59103	0.16762	9.7607E-05	1.6419	0.00095611	1.8096	0.0010537	582.3037462959472	17.878	0.64056	17.818	17.472	18.113	-0.060429					40	22	2	0	0	0	0.40888	1	1811	1811		1.8442	0.19162	1	67755	+		60050	20539	34476	34477	73292	73292					0.01623476554664194
YSLTAHYDE	9	Unmodified	_YSLTAHYDE_					0	0	0		nc|ENSG00000171551|O95672-2|ECEL1;ENSG00000171551|ENST00000304546|ECEL1	nc|ENSG00000171551|O95672-2|ECEL1	nc|ENSG00000171551|O95672-2|ECEL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	550.2734375	2	549.740554	1097.46655	0.61184	0.00033635	-2.058	-0.0011314	-1.4462	-0.00079503	549.739453892074	83.127	0.48076	83.2	83.003	83.484	0.073097					39	17	3	0	0	0	0.2451	1	21779	21779		15.847	0	1	313850			60051	6555	34477	34478	73293	73293					-0.07828020932674917
YSLVAPDEI	9	Unmodified	_YSLVAPDEI_					0	0	0		ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENSG00000123064|ENST00000306014|DDX54	ENSG00000123064|ENST00000306014|DDX54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	503.7577819824219	2	503.758215	1005.50188	0.15237	7.6755E-05	-0.79471	-0.00040034	-0.64235	-0.00032359	503.75769909391886	69.579	0.76592	69.579	69.257	70.023	0					76	27	4	0	0	0	0.055495	1	17611	17611		50.855	0	1	1089600			60052	3083	34478	34479	73294	73294					-0.0006535840486776578
YSLVAPDEI	9	Unmodified	_YSLVAPDEI_					0	0	0		ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENSG00000123064|ENST00000306014|DDX54	ENSG00000123064|ENST00000306014|DDX54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7577819824219	2	503.758215	1005.50188	0.17374	8.7525E-05	-0.94356	-0.00047532	-0.76981	-0.0003878	503.7577204619876	69.517	0.9568	69.583	69.094	70.051	0.066048					74	33	4	0	0	0	0.055495	1	17600	17600		50.855	0	1	931650			60053	3083	34478	34479	73295	73295					-0.0006535840486776578
YSLVAPDEI	9	Unmodified	_YSLVAPDEI_					0	0	0		ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENSG00000123064|ENST00000306014|DDX54	ENSG00000123064|ENST00000306014|DDX54	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	503.7577819824219	2	503.758215	1005.50188	0.22989	0.00011581	-0.56888	-0.00028658	-0.33899	-0.00017077	503.7577608112527	69.634	0.95609	69.612	69.181	70.137	-0.022087					86	34	4	0	0	0	0.055495	1	17611	17611		50.855	0	1	955790			60054	3083	34478	34479	73296	73296					-0.0006535840486776578
YSLWGLYLF	9	Unmodified	_YSLWGLYLF_					0	0	0			REV__LAMB4|p.H10Y|1|0.26|ENSG00000091128|chr7:108123137-108123137|G/A|missense_variant	REV__LAMB4|p.H10Y|1|0.26|ENSG00000091128|chr7:108123137-108123137|G/A|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.28857421875	2	581.302593	1160.59063	0.39188	0.0002278	-2.5341	-0.0014731	-2.1422	-0.0012453	581.3014959130027	71.998	0.65444	71.971	71.713	72.367	-0.027267					45	23	2	0	0	0	0.11517	1	18314	18314		36.044	3.2585	1	200060	+		60055	22835	34479	34480	73297	73297					0.016761016254577044
YSLWGLYLF	9	Unmodified	_YSLWGLYLF_					0	0	0			REV__LAMB4|p.H10Y|1|0.26|ENSG00000091128|chr7:108123137-108123137|G/A|missense_variant	REV__LAMB4|p.H10Y|1|0.26|ENSG00000091128|chr7:108123137-108123137|G/A|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	581.2891845703125	2	581.302593	1160.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.136	1	71.111	70.611	71.611	-0.024872								0	0	0	0.074381	1	18053	18053		53.576	0	1		+		60056	22835	34479	34480	73298	73298					0.016761016254577044
YSLYPLLLF	9	Unmodified	_YSLYPLLLF_					0	0	0			REV__ENSG00000185775|ENST00000332857|SPATA31A6	REV__ENSG00000185775|ENST00000332857|SPATA31A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.8209838867188	2	564.820618	1127.62668	0.64343	0.00036342	0.33827	0.00019106	0.9817	0.00055448	564.8205307636092	78.422	1.8812	78.48	77.183	79.064	0.058151					131	70	3	0	0	0	0.30623	2	20253	20253;20303		7.9102	1.7044	1	489720	+		60057	18408	34480	34481	73299;73300	73299					0.0679755880232733
YSLYPLLLF	9	Unmodified	_YSLYPLLLF_					0	0	0			REV__ENSG00000185775|ENST00000332857|SPATA31A6	REV__ENSG00000185775|ENST00000332857|SPATA31A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	564.2171630859375	2	564.820618	1127.62668	0.46226	0.00026109	0.06839	3.8628E-05	0.53065	0.00029972	564.8203886204465	83.39	0.83847	83.373	82.928	83.767	-0.016823					60	34	2	0	0	0	0.25526	1	21735	21735		7.9102	3.1541	1	269620	+		60058	18408	34480	34481	73301	73301					0.0679755880232733
YSLYPLLLF	9	Unmodified	_YSLYPLLLF_					0	0	0			REV__ENSG00000185775|ENST00000332857|SPATA31A6	REV__ENSG00000185775|ENST00000332857|SPATA31A6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	564.820618	1127.62668	0.49132	0.00027751	1.1507	0.00064992	1.642	0.00092743	564.821069648321	83.045	0.1988	83.045	82.925	83.123	0	-0.16392	0.00093854	NaN	7.9102	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121760	+		60059	18408	34480	34481							0.0679755880232733
YSMGWKSAF	9	Unmodified	_YSMGWKSAF_					0	0	0			REV__nc|ENSG00000186197|Q8WWZ3-2|EDARADD	REV__nc|ENSG00000186197|Q8WWZ3-2|EDARADD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8638305664062	2	538.747127	1075.4797	0.72722	0.00039179	0.022328	1.2029E-05	0.74955	0.00040382	538.7474858707574	84.28	1.1148	84.28	83.954	85.069	0					64	43	2	0	0	0	0.25323	1	22138	22138		10.074	1.4806	1	453700	+		60060	18435	34481	34482	73302	73302					-0.055018613542642925
YSMGWKSAF	9	Unmodified	_YSMGWKSAF_					0	0	0			REV__nc|ENSG00000186197|Q8WWZ3-2|EDARADD	REV__nc|ENSG00000186197|Q8WWZ3-2|EDARADD	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2955322265625	2	538.747127	1075.4797	0.638	0.00034372	0.27723	0.00014936	0.91522	0.00049307	538.7476692692628	84.083	0.61584	84.16	83.998	84.614	0.077095					50	24	3	0	0	0	0.24289	1	22102	22102		18.146	7.963	1	371050	+		60061	18435	34481	34482	73303	73303					-0.055018613542642925
YSNGFLECIF	10	Unmodified	_YSNGFLECIF_					0	0	0			REV__MYNN|p.C504F|1|0.2|ENSG00000085274|chr3:169784649-169784649|G/T|missense_variant	REV__MYNN|p.C504F|1|0.2|ENSG00000085274|chr3:169784649-169784649|G/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.7723388671875	2	596.7708	1191.52705	0.44415	0.00026506	-0.079783	-4.7612E-05	0.36437	0.00021745	596.7706502775488	75.728	1.575	75.696	75.416	76.991	-0.031487					143	57	5	0	0	0	0.24105	1	19380	19380		27.629	3.839	1	3737600	+		60062	22870	34482	34483	73304	73304					-0.06105626873932124
YSNKLLDIL	9	Unmodified	_YSNKLLDIL_					0	0	0		nc|ENSG00000100890|O15091-4|PRORP;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP	nc|ENSG00000100890|O15091-4|PRORP	nc|ENSG00000100890|O15091-4|PRORP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.29052734375	2	539.810782	1077.60701	0.5832	0.00031482	0.0083771	4.522E-06	0.59158	0.00031934	539.81076022935	56.659	0.43674	56.659	56.471	56.908	0					24	15	2	0	0	0	0.24993	1	13587	13587		13.042	0	1	279810			60063	1642	34483	34484	73305	73305					0.07131182791590618
YSNRRAPGTKI	11	Unmodified	_YSNRRAPGTKI_					0	0	0			REV__nc|ENSG00000069020|O15021-2|MAST4	REV__nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.5704650878906	3	421.570316	1261.68912	-0.18802	-7.9264E-05	0.75353	0.00031767	0.56551	0.0002384	421.57038708024606	16.874	0.79429	16.76	16.532	17.326	-0.11434					86	28	4	0	0	0	0.40129	1	1463	1463		11.065	2.3135	1	395200	+		60064	13711	34484	34485	73306	73306					0.06874097923218869
YSNRRAPGTKI	11	Unmodified	_YSNRRAPGTKI_					0	0	0			REV__nc|ENSG00000069020|O15021-2|MAST4	REV__nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.5703125	3	421.570316	1261.68912	0.056145	2.3669E-05	0.38787	0.00016351	0.44401	0.00018718	421.57030961153754	16.737	0.82678	16.675	16.382	17.209	-0.062534					59	29	4	0	0	0	0.40129	1	1415	1415		11.065	0.16632	1	330850	+		60065	13711	34484	34485	73307	73307					0.06874097923218869
YSPCRRRPGPG	11	Unmodified	_YSPCRRRPGPG_					0	0	0		ENST00000609552.1_1_4:83295512-83295800:+|nuORF	ENST00000609552.1_1_4:83295512-83295800:+|nuORF	ENST00000609552.1_1_4:83295512-83295800:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.8805847167969	3	415.880496	1244.61966	-1.4206	-0.00059081	1.8336	0.00076257	0.413	0.00017176	415.8814572435638	34.755	0.64223	34.755	34.446	35.088	0					60	22	4	0	0	0	0.46059	1	6893	6893		1.3296	1.3296	1	342210			60066	12329	34485	34486	73308	73308					0.007133157027965353
YSPELQNLN	9	Unmodified	_YSPELQNLN_					0	0	0			REV__nc|ENSG00000137269|Q9BTT6-2|LRRC1	REV__nc|ENSG00000137269|Q9BTT6-2|LRRC1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.2843627929688	2	539.264196	1076.51384	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.25	1	70.228	69.728	70.728	-0.022087								0	0	0	0.21353	1	17781	17781		18.146	2.2992	1		+		60067	23006	34486	34487	73309	73309					-0.021357416616638147
YSPFSFLNGF	10	Unmodified	_YSPFSFLNGF_					0	0	0			REV__nc|ENSG00000077097|Q02880-2|TOP2B	REV__nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.7647705078125	2	589.779482	1177.54441	0.49178	0.00029004	1.3628	0.00080377	1.8546	0.0010938	589.7801699261125	75.529	0.62138	75.498	75.235	75.857	-0.031487					56	22	3	0	0	0	0.34325	1	19422	19422		13.906	2.2658	1	415360	+		60068	13837	34487	34488	73310	73310					-0.03725963276610855
YSPILVKLF	9	Unmodified	_YSPILVKLF_					0	0	0			REV__nc|ENSG00000139910|P51513-5|NOVA1	REV__nc|ENSG00000139910|P51513-5|NOVA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.310546875	2	540.328611	1078.64267	0.53483	0.00028898	2.1559	0.0011649	2.6908	0.0014539	540.8316047271753	89.719	0.32919	89.809	89.624	89.954	0.090561					37	25	2	0	0	0	0.25526	1	23720	23720		7.9102	2.1783	1	210860	+		60069	16012	34488	34489	73311	73311					0.10649265039205602
YSPRAGKTL	9	Unmodified	_YSPRAGKTL_					0	0	0		ENSG00000223611|ENST00000486479|SUPT20HL2;nc|ENSG00000223731|Q3ZLR7|SUPT20HL1;ENSG00000223731|ENST00000686983|SUPT20HL1	ENSG00000223611|ENST00000486479|SUPT20HL2	ENSG00000223611|ENST00000486479|SUPT20HL2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.78033447265625	2	496.779816	991.545079	0.31751	0.00015773	0.050256	2.4966E-05	0.36777	0.0001827	496.77969362429684	23.8	0.79257	23.727	23.474	24.267	-0.072559					66	26	4	0	0	0	0.28674	1	3653	3653		10.824	2.2306	1	262980			60070	8439	34489	34490	73312	73312					0.04896876163093111
YSQDMPHRRL	10	Unmodified	_YSQDMPHRRL_					0	0	0			REV__nc|ENSG00000158352|Q9ULL8-2|SHROOM4	REV__nc|ENSG00000158352|Q9ULL8-2|SHROOM4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.8823547363281	3	434.883906	1301.62989	NaN	NaN	NaN	NaN	NaN	NaN	NaN	111.79	1	111.79	111.29	112.29	0								0	0	0	0.38198	1	29069	29069		0.62683	0.12087	1		+		60071	16809	34490	34491	73313	73313					-0.008861213626232711
YSQTLSRLED	10	Unmodified	_YSQTLSRLED_					0	0	0			REV__nc|ENSG00000110713|P52948-6|NUP98	REV__nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.308837890625	2	606.298767	1210.58298	0.54151	0.00032832	0.93751	0.00056841	1.479	0.00089673	606.2997994395098	72.901	1.9735	72.901	72.4	74.374	0					210	69	6	0	0	0	0.2361	1	18537	18537		32.786	13.529	1	21090000	+		60072	14680	34491	34492	73314	73314					-0.013887024327686959
YSRALLNEL	9	Unmodified	_YSRALLNEL_					0	0	0			REV__ENST00000379752.5_1_1:157029999-157030212:-|nuORF	REV__ENST00000379752.5_1_1:157029999-157030212:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	539.7877807617188	2	539.798206	1077.58186	0.54779	0.0002957	0.66457	0.00035873	1.2124	0.00065443	539.7986033020511	52.749	0.65424	52.749	52.574	53.228	0					38	23	3	0	0	0	0.15763	1	12443	12443		29.841	3.8199	1	497090	+		60073	15165	34492	34493	73315	73315					0.0461712798901317
YSRAVRDVK	9	Unmodified	_YSRAVRDVK_					0	0	0		nc|ENSG00000141441|Q9H706-2|GAREM1;nc|ENSG00000141441|Q9H706-3|GAREM1;ENSG00000141441|ENST00000269209|GAREM1	nc|ENSG00000141441|Q9H706-2|GAREM1	nc|ENSG00000141441|Q9H706-2|GAREM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.7979736328125	2	547.309272	1092.60399	0.66544	0.0003642	1.1287	0.00061774	1.7941	0.00098194	547.3097817795638	65.865	1.1343	65.865	65.319	66.453	0					81	40	3	0	0	0	0.25989	1	16533	16533		14.838	0.25658	1	1125200			60074	4379	34493	34494	73316	73316					0.0613935245742141
YSRFAEEQKL	10	Unmodified	_YSRFAEEQKL_					0	0	0			REV__nc|ENSG00000187144|Q7Z572-2|SPATA21	REV__nc|ENSG00000187144|Q7Z572-2|SPATA21	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8872985839844	3	424.21906	1269.63535	0.12858	5.4548E-05	-2.9605	-0.0012559	-2.8319	-0.0012014	424.2178364447129	29.602	0.63958	29.602	29.193	29.833	0					32	22	2	0	0	0	0.28683	1	5340	5340		17.863	0.81459	1	105080	+		60075	18492	34494	34495	73317	73317					0.011318807008365184
YSRLTTPVF	9	Unmodified	_YSRLTTPVF_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7515258789062	2	542.295299	1082.57605	0.17841	9.6752E-05	-1.2113	-0.00065691	-1.0329	-0.00056015	542.2954045419133	60.329	0.37065	60.424	60.18	60.55	0.095093					16	13	2	0	0	0	0.2451	1	14735	14735		15.847	0	1	297350			60076	290	34495	34496	73318	73318					0.03806029477323136
YSRLTTPVF	9	Unmodified	_YSRLTTPVF_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	542.295299	1082.57605	0.4594	0.00024913	-0.77008	-0.00041761	-0.31068	-0.00016848	542.2956733924906	60.366	0.29561	60.354	60.108	60.404	-0.011486	0.0212	0.00020236	NaN	15.847	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277540			60077	290	34495	34496							0.03806029477323136
YSRQDLPSR	9	Unmodified	_YSRQDLPSR_					0	0	0			REV__nc|ENSG00000153922|O14646-2|CHD1	REV__nc|ENSG00000153922|O14646-2|CHD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2883911132812	2	561.288537	1120.56252	0.26791	0.00015037	-0.24314	-0.00013647	0.024769	1.3903E-05	561.2883435229594	17.158	0.70295	17.158	16.895	17.598	0					61	24	3	0	0	0	0.33276	1	1630	1630		3.9444	0	1	385480	+		60078	23033	34496	34497	73319	73319					0.0070617169808429026
YSRRIDITL	9	Unmodified	_YSRRIDITL_					0	0	0		ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.2772827148438	2	568.824755	1135.63496	0.42965	0.0002444	-0.90307	-0.00051369	-0.47342	-0.00026929	568.8237285804537	42.962	0.59928	43.048	42.861	43.461	0.085197					37	21	3	0	0	0	0.16853	1	9401	9401		38.176	14.155	1	445100			60079	2208	34497	34498	73320	73320					0.07256505771670163
YSRRIDITL	9	Unmodified	_YSRRIDITL_					0	0	0		ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	ENST00000586720.5_1_17:76967660-76975958:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.2769775390625	2	568.824755	1135.63496	0.077763	4.4233E-05	-0.63558	-0.00036153	-0.55782	-0.0003173	568.8239408458746	42.932	0.64149	43.024	42.8	43.442	0.091362					41	23	3	0	0	0	0.1939	1	9385	9385		30.637	6.616	1	439340			60080	2208	34497	34498	73321	73321					0.07256505771670163
YSRRLRLLF	9	Unmodified	_YSRRLRLLF_					0	0	0		ENST00000419296.1_1_2:110745934-110746081:+|nuORF	ENST00000419296.1_1_2:110745934-110746081:+|nuORF	ENST00000419296.1_1_2:110745934-110746081:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	408.58380126953125	3	408.583897	1222.72986	0.048233	1.9707E-05	-0.30018	-0.00012265	-0.25194	-0.00010294	408.5837531845634	49.09	0.60725	49.09	48.827	49.434	0					33	21	2	0	0	0	0.30824	1	11290	11290		7.609	0.50723	1	440420			60081	10349	34498	34499	73322	73322					0.12740484033497523
YSRSYQEFY	9	Unmodified	_YSRSYQEFY_					0	0	0			REV__nc|ENSG00000104067|Q07157-2|TJP1	REV__nc|ENSG00000104067|Q07157-2|TJP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.8112182617188	2	621.774928	1241.5353	0.24819	0.00015432	-4.1472	-0.0025786	-3.899	-0.0024243	621.7721143692121	64.337	0.32985	64.429	64.2	64.53	0.09288					19	11	2	0	0	0	0.22061	1	15958	15958		24.021	6.9077	1	145530	+		60082	14394	34499	34500	73323	73323					-0.07580356632934127
YSRSYRRYK	9	Unmodified	_YSRSYRRYK_					0	0	0			REV__nc|ENSG00000117616|Q9BUV0-3|RSRP1	REV__nc|ENSG00000117616|Q9BUV0-3|RSRP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	427.2416687011719	3	426.894911	1277.6629	-0.3602	-0.00015377	2.7343	0.0011673	2.3741	0.0010135	426.8958077620437	30.209	0.26028	30.236	30.134	30.394	0.027157					12	8	3	0	0	0	0.25346	1	5543	5543		10.8	1.5557	1	77157	+		60083	14981	34500	34501	73324	73324					0.0351782875175104
YSSFPVIPYQ	10	Unmodified	_YSSFPVIPYQ_					0	0	0		ENST00000374810.7_1_20:33298341-33298617:+|nuORF	ENST00000374810.7_1_20:33298341-33298617:+|nuORF	ENST00000374810.7_1_20:33298341-33298617:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.3341064453125	2	600.800414	1199.58628	0.38783	0.00023301	-0.43625	-0.0002621	-0.048427	-2.9095E-05	600.8000065762784	81.745	0.22956	81.721	81.564	81.793	-0.02404					12	9	2	0	0	0	0.31847	1	21299	21299		6.7232	1.4263	1	54476			60084	9901	34501	34502	73325	73325					-0.005534075880859746
YSSGVVTNNPL	11	Unmodified	_YSSGVVTNNPL_					0	0	0			REV__ENSG00000185716|ENST00000542527|MOSMO	REV__ENSG00000185716|ENST00000542527|MOSMO	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7914428710938	2	575.790578	1149.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.65	1	114.65	114.15	115.15	0								0	0	0	0.35034	1	29736	29736		8.1555	1.0538	1		+		60085	18402	34502	34503	73326	73326					-0.002197835988681618
YSSGVVTNNPL	11	Unmodified	_YSSGVVTNNPL_					0	0	0			REV__ENSG00000185716|ENST00000542527|MOSMO	REV__ENSG00000185716|ENST00000542527|MOSMO	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7920532226562	2	575.790578	1149.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.1	1	112.08	111.58	112.58	-0.015625								0	0	0	0.32191	1	29162	29162		14.405	3.5815	1		+		60086	18402	34502	34503	73327	73327					-0.002197835988681618
YSSGVVTNNPL	11	Unmodified	_YSSGVVTNNPL_					0	0	0			REV__ENSG00000185716|ENST00000542527|MOSMO	REV__ENSG00000185716|ENST00000542527|MOSMO	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7910766601562	2	575.790578	1149.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.27	1	112.26	111.76	112.76	-0.015625								0	0	0	0.33831	1	29206	29206		10.8	2.0541	1		+		60087	18402	34502	34503	73328	73328					-0.002197835988681618
YSSHLIRHH	9	Unmodified	_YSSHLIRHH_					0	0	0		ENSG00000185947|ENST00000300870|ZNF267;ENST00000575471.2_1_16:31925765-31927799:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267	ENSG00000185947|ENST00000300870|ZNF267	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.7847900390625	2	575.299239	1148.58392	0.33225	0.00019114	1.1665	0.00067111	1.4988	0.00086225	575.2995790875874	57.427	0.36245	57.427	57.19	57.552	0					14	12	2	0	0	0	0.22061	1	13868	13868		24.021	12.38	1	137260			60088	7571	34503	34504	73329	73329					0.015576015174701752
YSSHLIRHH	9	Unmodified	_YSSHLIRHH_					0	0	0		ENSG00000185947|ENST00000300870|ZNF267;ENST00000575471.2_1_16:31925765-31927799:+|nuORF	ENSG00000185947|ENST00000300870|ZNF267	ENSG00000185947|ENST00000300870|ZNF267	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.7848510742188	2	575.299239	1148.58392	0.36588	0.00021049	1.82	0.001047	2.1858	0.0012575	575.3004313927069	56.927	0.72725	57.006	56.756	57.484	0.078674					47	26	3	0	0	0	0.20651	1	13818	13818		26.884	6.43	1	268050			60089	7571	34503	34504	73330	73330					0.015576015174701752
YSSKQSFPGIL	11	Unmodified	_YSSKQSFPGIL_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.5523376464844	3	409.552039	1225.63429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.143	1	22.043	21.543	22.543	-0.10034								0	0	0	0.36449	1	3058	3058		5.0475	0.51865	1				60090	1106	34504	34505	73331	73331					0.030496663319581785
YSSKTLEL	8	Unmodified	_YSSKTLEL_					0	0	0		nc|ENSG00000115806|Q9H8Y8-2|GORASP2;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF	nc|ENSG00000115806|Q9H8Y8-2|GORASP2	nc|ENSG00000115806|Q9H8Y8-2|GORASP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	471.26251220703125	2	470.752933	939.491313	0.13651	6.4262E-05	0.001683	7.923E-07	0.13819	6.5055E-05	470.75299145711176	38.752	0.43313	38.844	38.57	39.003	0.092419					37	15	4	0	0	0	0.30241	1	8056	8056		25.399	0	1	299890			60091	2675	34505	34506	73332	73332					0.01914658940722802
YSSKTLEL	8	Unmodified	_YSSKTLEL_					0	0	0		nc|ENSG00000115806|Q9H8Y8-2|GORASP2;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF	nc|ENSG00000115806|Q9H8Y8-2|GORASP2	nc|ENSG00000115806|Q9H8Y8-2|GORASP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	471.2624816894531	2	470.752933	939.491313	0.37582	0.00017692	-0.56772	-0.00026726	-0.1919	-9.0338E-05	470.75278875635183	38.733	0.52718	38.832	38.519	39.046	0.099403					24	18	2	0	0	0	0.17289	1	8088	8088		47.749	11.704	1	249400			60092	2675	34505	34506	73333	73333					0.01914658940722802
YSSLQLQHL	9	Unmodified	_YSSLQLQHL_					0	0	0		nc|ENSG00000108813|Q92988-3|DLX4;nc|ENSG00000108813|Q92988-2|DLX4;ENSG00000108813|ENST00000240306|DLX4	nc|ENSG00000108813|Q92988-3|DLX4	nc|ENSG00000108813|Q92988-3|DLX4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.27197265625	2	544.790381	1087.56621	0.617	0.00033613	0.28206	0.00015366	0.89906	0.0004898	544.7905969865573	48.529	0.64359	48.529	48.268	48.912	0					42	22	3	0	0	0	0.20651	1	11135	11135		26.884	0	1	472370			60093	2214	34506	34507	73334	73334					0.025928414719373905
YSSQLARH	8	Unmodified	_YSSQLARH_					0	0	0		ENSG00000169981|ENST00000396056|ZNF35	ENSG00000169981|ENST00000396056|ZNF35	ENSG00000169981|ENST00000396056|ZNF35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	481.2459411621094	2	481.246141	960.477728	0.02612	1.257E-05	0.24049	0.00011573	0.26661	0.0001283	481.2461751180837	104.02	0.62807	104.03	103.91	104.53	0.0082626					145	86	2	0	0	0	0.43302	2	27616	27616;27678		11.64	0	1	772420			60094	6410	34507	34508	73335;73336	73335					-0.0040915404786119325
YSSQVRATSL	10	Unmodified	_YSSQVRATSL_					0	0	0			REV__ENST00000360375.7_1_8:86025320-86027371:+|nuORF	REV__ENST00000360375.7_1_8:86025320-86027371:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.309814453125	2	556.290745	1110.56694	0.33597	0.0001869	1.864	0.0010369	2.2	0.0012238	556.2927376611409	58.94	0.84657	58.926	58.523	59.37	-0.014267					54	29	3	0	0	0	0.25219	1	14296	14296		26.268	4.5215	1	608510	+		60095	20255	34508	34509	73337	73337					0.016076361210025425
YSSRFTPSSF	10	Unmodified	_YSSRFTPSSF_					0	0	0			REV__ENSG00000120436|ENST00000366834|GPR31	REV__ENSG00000120436|ENST00000366834|GPR31	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.765380859375	2	589.77747	1177.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.605	1	76.574	76.074	77.074	-0.031487								0	0	0	0.35948	1	19723	19723		10.824	0	1		+		60096	15083	34509	34510	73338	73338					-0.041280527703293046
YSSSLVMLL	9	Unmodified	_YSSSLVMLL_					0	0	0		ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.77337646484375	2	506.772811	1011.53107	0.37742	0.00019127	0.14901	7.5515E-05	0.52643	0.00026678	506.77288264315894	82.228	1.0473	82.204	81.743	82.79	-0.02404					107	41	4	0	0	0	0.20344	1	21504	21504		23.148	0	1	2455600			60097	1152	34510	34511	73339	73339					0.02576462619799713
YSSTRMCRW	9	Unmodified	_YSSTRMCRW_					0	0	0			REV__ENST00000271064.11_1_1:32051077-32051419:+|nuORF	REV__ENST00000271064.11_1_1:32051077-32051419:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.8533325195312	2	595.265693	1188.51683	0.96228	0.00057281	2.2928	0.0013648	3.2551	0.0019376	595.2669387638755	55.889	0.5093	55.889	55.564	56.074	0					30	17	3	0	0	0	0.25066	1	13314	13314		7.2892	4.294	1	599680	+		60098	19674	34511	34512	73340	73340					-0.06988513080159464
YSSTRMCRW	9	Unmodified	_YSSTRMCRW_					0	0	0			REV__ENST00000271064.11_1_1:32051077-32051419:+|nuORF	REV__ENST00000271064.11_1_1:32051077-32051419:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	595.265693	1188.51683	0.98349	0.00058544	2.4247	0.0014433	3.4082	0.0020288	595.2673207438108	56.214	0.5142	56.195	55.942	56.456	-0.019077	0.23292	-1.1095E-05	NaN	3.9444	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	780750	+		60099	19674	34511	34512							-0.06988513080159464
YSSYLVYKFSL	11	Unmodified	_YSSYLVYKFSL_					0	0	0			REV__ENST00000296861.2_1_6:47199552-47199924:-|nuORF	REV__ENST00000296861.2_1_6:47199552-47199924:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	456.7928466796875	3	457.239461	1368.69655	0.2338	0.0001069	-3.6487	-0.0016683	-3.4149	-0.0015614	457.57250493783624	33.314	0.32852	33.374	33.204	33.533	0.060699					16	11	2	0	0	0	0.33236	1	6478	6478		2.4348	0	1	58539	+		60100	19800	34512	34513	73341	73341					0.026953926802889328
YSTKWRLF	8	Unmodified	_YSTKWRLF_					0	0	0			REV__nc|ENSG00000104755|Q99965-2|ADAM2	REV__nc|ENSG00000104755|Q99965-2|ADAM2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.2784423828125	2	550.798009	1099.58147	0.34775	0.00019154	-0.38582	-0.00021251	-0.038071	-2.0969E-05	550.7964256571989	73.665	0.16029	73.635	73.556	73.716	-0.030655					6	5	2	0	0	0	0.34218	1	18837	18837		9.3474	0	1	40370	+		60101	14419	34513	34514	73342	73342					0.035657530597973164
YSTLHTQSAE	10	Unmodified	_YSTLHTQSAE_					0	0	0		nc|ENSG00000102181|Q8TCZ2-6|CD99L2;nc|ENSG00000102181|Q8TCZ2-3|CD99L2;nc|ENSG00000102181|Q8TCZ2-2|CD99L2;ENSG00000102181|ENST00000370377|CD99L2;nc|ENSG00000102181|Q8TCZ2-5|CD99L2	nc|ENSG00000102181|Q8TCZ2-6|CD99L2	nc|ENSG00000102181|Q8TCZ2-6|CD99L2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.7637939453125	2	568.76456	1135.51457	0.42015	0.00023897	-1.2178	-0.00069263	-0.79763	-0.00045366	568.7636719332089	29.812	1.3742	29.824	29.19	30.564	0.012264					87	47	2	0	0	0	0.3258	1	5428	5428		17.113	0.96379	1	276930			60102	1752	34514	34515	73343	73343					-0.047769470126240776
YSTQLFID	8	Unmodified	_YSTQLFID_					0	0	0			REV__ENST00000242351.9_1_7:138729509-138729581:-|nuORF	REV__ENST00000242351.9_1_7:138729509-138729581:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	493.7268981933594	2	493.745108	985.475663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.103	1	78.073	77.573	78.573	-0.030434								0	0	0	0.32762	1	20175	20175		24.674	6.5389	1		+		60103	19493	34515	34516	73344	73344					-0.017656275763442864
YSTREKQQ	8	Unmodified	_YSTREKQQ_					0	0	0		nc|ENSG00000127586|Q8WVB6-2|CHTF18;ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-3|CHTF18	nc|ENSG00000127586|Q8WVB6-2|CHTF18	nc|ENSG00000127586|Q8WVB6-2|CHTF18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	519.7698974609375	2	520.261988	1038.50942	0.13586	7.0685E-05	-1.5649	-0.00081416	-1.429	-0.00074348	520.2618875512195	15.677	0.53062	15.613	15.275	15.806	-0.064413					44	17	4	0	0	0	0.34226	1	1006	1006		10.074	4.8433	1	124530			60104	3331	34516	34517	73345	73345					-0.00829206084586076
YSTRSRCSSV	10	Unmodified	_YSTRSRCSSV_					0	0	0		ENST00000547003.1_1_12:49916566-49919899:+|nuORF;ENST00000549412.5_2_12:49906680-49920035:+|nuORF;ENSG00000123352|ENST00000552918|SPATS2	ENST00000547003.1_1_12:49916566-49919899:+|nuORF	ENST00000547003.1_1_12:49916566-49919899:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.2520141601562	2	573.272029	1144.52951	0.017263	9.8962E-06	-1.7318	-0.00099277	-1.7145	-0.00098287	573.2710474861673	27.722	0.38982	27.701	27.559	27.949	-0.021412					18	13	2	0	0	0	0.38233	1	4727	4727		6.7232	1.4925	1	111520			60105	3100	34517	34518	73346	73346					-0.03697778416290021
YSTSGLSLI	9	Unmodified	_YSTSGLSLI_					0	0	0		TMEM168|p.F474Lfs*8|1|0.25|ENSG00000146802|chr7:112772905-112772905|A/-|frameshift_variant	TMEM168|p.F474Lfs*8|1|0.25|ENSG00000146802|chr7:112772905-112772905|A/-|frameshift_variant	TMEM168|p.F474Lfs*8|1|0.25|ENSG00000146802|chr7:112772905-112772905|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	471.2625732421875	2	470.752933	939.491313	-0.30873	-0.00014533	0.30005	0.00014125	-0.0086751	-4.0838E-06	470.7530463296815	38.826	0.52147	38.826	38.518	39.04	0					27	18	2	0	0	0	0.19839	1	8076	8076		21.747	4.8044	1	282120			60106	23398	34518	34519	73347	73347					0.01914658940722802
YSVAKDKPPG	10	Unmodified	_YSVAKDKPPG_					0	0	0			REV__ENSG00000166924|ENST00000300179|NYAP1	REV__ENSG00000166924|ENST00000300179|NYAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	530.7601928710938	2	531.284931	1060.55531	0.54156	0.00028772	4.0238	0.0021378	4.5654	0.0024255	531.2862212978567	38.423	0.43747	38.52	38.32	38.758	0.097527					32	15	3	0	0	0	0.31926	1	7948	7948		5.7319	0.43497	1	200390	+		60107	17347	34519	34520	73348	73348					0.02745439097657254
YSVFEGDTL	9	Unmodified	_YSVFEGDTL_					0	0	0		nc|ENSG00000163518|Q96PJ5-2|FCRL4;ENSG00000163518|ENST00000271532|FCRL4	nc|ENSG00000163518|Q96PJ5-2|FCRL4	nc|ENSG00000163518|Q96PJ5-2|FCRL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	515.2479248046875	2	515.740022	1029.46549	0.20594	0.00010621	0.78315	0.0004039	0.98909	0.00051011	515.7399690461366	75.434	0.7534	75.434	75.178	75.932	0					43	26	2	0	0	0	0.17611	1	19393	19393		34.102	8.7031	1	171880			60108	5693	34520	34521	73349	73349					-0.048062353015666304
YSVFEGDTL	9	Unmodified	_YSVFEGDTL_					0	0	0		nc|ENSG00000163518|Q96PJ5-2|FCRL4;ENSG00000163518|ENST00000271532|FCRL4	nc|ENSG00000163518|Q96PJ5-2|FCRL4	nc|ENSG00000163518|Q96PJ5-2|FCRL4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	515.247802734375	2	515.740022	1029.46549	0.34824	0.0001796	0.52937	0.00027301	0.8776	0.00045261	515.7400206932082	75.491	0.69379	75.459	75.135	75.829	-0.031487					34	23	2	0	0	0	0.17611	1	19340	19340		26.884	3.7352	1	166990			60109	5693	34520	34521	73350	73350					-0.048062353015666304
YSVGSESDSSK	11	Unmodified	_YSVGSESDSSK_					0	0	0		SHANK2|p.S403Ifs*5|1|0.12|ENSG00000162105|chr11:70492430-70492431|-/T|frameshift_variant;SHANK2|p.S403Pfs*7|1|0.13|ENSG00000162105|chr11:70492431-70492432|-/GCTTGGA|frameshift_variant;ENSG00000162105|ENST00000601538|SHANK2	SHANK2|p.S403Ifs*5|1|0.12|ENSG00000162105|chr11:70492430-70492431|-/T|frameshift_variant	SHANK2|p.S403Ifs*5|1|0.12|ENSG00000162105|chr11:70492430-70492431|-/T|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.252197265625	2	573.251482	1144.48841	-0.059398	-3.405E-05	0.55857	0.0003202	0.49917	0.00028615	573.2520941893988	27.556	0.72116	27.545	27.29	28.011	-0.011562					54	24	4	0	0	0	0.39802	1	4676	4676		11.495	2.1116	1	601060			60110	5549	34521	34522	73351	73351					-0.07805260974760131
YSVKKRHFI	9	Unmodified	_YSVKKRHFI_					0	0	0		ENST00000461129.5_1_6:126319428-126329623:+|nuORF;nc|ENSG00000066651|Q7Z4G4-3|TRMT11;nc|ENSG00000066651|Q7Z4G4-2|TRMT11;ENSG00000066651|ENST00000334379|TRMT11	ENST00000461129.5_1_6:126319428-126329623:+|nuORF	ENST00000461129.5_1_6:126319428-126329623:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3408203125	2	589.345658	1176.67676	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.12	1	113.12	112.62	113.62	0								0	0	0	0.2646	1	29384	29384		1.6526	0.17072	1				60111	844	34522	34523	73352	73352					0.09549106250847217
YSVKPLSHR	9	Unmodified	_YSVKPLSHR_					0	0	0			REV__ENSG00000109158|ENST00000264318|GABRA4;REV__ENSG00000145863|ENST00000274545|GABRA6	REV__ENSG00000145863|ENST00000274545|GABRA6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	543.782958984375	2	543.806365	1085.59818	0.78768	0.00042834	3.7631	0.0020464	4.5508	0.0024748	544.3100046992154	37.632	0.42587	37.632	37.342	37.767	0					27	14	3	0	0	0	0.21389	1	7702	7702		19.257	0	1	235690	+		60112	14631;16313	34523	34524	73353	73353					0.05880253945747427
YSVLFETFGY	10	Unmodified	_YSVLFETFGY_					0	0	0		ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.53131103515625	3	409.197374	1224.57029	-0.26262	-0.00010746	-1.0434	-0.00042694	-1.306	-0.0005344	409.53151449112215	14.343	0.71857	14.277	14.07	14.788	-0.066068					74	25	6	0	0	0	0.39935	1	699	699		1.7423	0	1	122340			60113	5548	34524	34525	73354	73354					-0.03301113825000357
YSVLSWNQLF	10	Unmodified	_YSVLSWNQLF_					0	0	0			REV__chrX:70610543-70613253|397|28.71|0.16|7.46|-|1|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|33	REV__chrX:70610543-70613253|397|28.71|0.16|7.46|-|1|TE_info:L1M1,L1M1_dup5345,L1,LINE,donor,+,70613253,70616531|TEX11,None|33	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.2986450195312	2	628.819138	1255.62372	0.089421	5.6229E-05	-0.13266	-8.3417E-05	-0.043236	-2.7188E-05	628.819009118338	67.182	0.58566	67.166	66.893	67.478	-0.016296					37	19	3	0	0	0	0.34795	1	16814	16814		13.042	0	1	285160	+		60114	13224	34525	34526	73355	73355					0.0061368367748855235
YSVNVAESMSR	11	Unmodified	_YSVNVAESMSR_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.L2576Sfs*7|1|0.05|ENSG00000164309|chr5:79736491-79736492|-/C|frameshift_variant;CMYA5|p.L2576Kfs*8|1|0.05|ENSG00000164309|chr5:79736490-79736491|-/AAGC|frameshift_variant	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.792724609375	2	621.792795	1241.57104	0.49615	0.0003085	-0.43858	-0.00027271	0.057572	3.5798E-05	621.792568084324	29.303	0.74402	29.303	29.006	29.75	0					61	26	3	0	0	0	0.38187	1	5200	5200		13.615	1.3742	1	347830			60115	5828	34526	34527	73356	73356					-0.04008642447593047
YSVRQNESN	9	Unmodified	_YSVRQNESN_					0	0	0		ENSG00000166446|ENST00000570137|CDYL2	ENSG00000166446|ENST00000570137|CDYL2	ENSG00000166446|ENST00000570137|CDYL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.30517578125	2	548.754527	1095.4945	0.55381	0.0003039	0.89888	0.00049326	1.4527	0.00079717	548.7549668710757	66.409	0.72679	66.409	66.099	66.825	0					34	25	2	0	0	0	0.22596	1	16676	16676		21.747	9.2151	1	336590			60116	6080	34527	34528	73357	73357					-0.04942697952560593
YSVRQNESN	9	Unmodified	_YSVRQNESN_					0	0	0		ENSG00000166446|ENST00000570137|CDYL2	ENSG00000166446|ENST00000570137|CDYL2	ENSG00000166446|ENST00000570137|CDYL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.3050537109375	2	548.754527	1095.4945	0.60268	0.00033073	0.98323	0.00053955	1.5859	0.00087028	548.7550055158871	66.239	0.74536	66.323	66.05	66.795	0.083832					39	26	2	0	0	0	0.22596	1	16627	16627		15.847	6.4641	1	327140			60117	6080	34527	34528	73358	73358					-0.04942697952560593
YSVRQNESN	9	Unmodified	_YSVRQNESN_					0	0	0		ENSG00000166446|ENST00000570137|CDYL2	ENSG00000166446|ENST00000570137|CDYL2	ENSG00000166446|ENST00000570137|CDYL2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.3048706054688	2	548.754527	1095.4945	0.46116	0.00025306	1.085	0.00059543	1.5462	0.00084849	548.7550356381221	66.386	0.70152	66.372	66.063	66.765	-0.013596					38	25	2	0	0	0	0.22596	1	16651	16651		15.847	1.9411	1	339260			60118	6080	34527	34528	73359	73359					-0.04942697952560593
YSVSLQTIPPV	11	Unmodified	_YSVSLQTIPPV_					0	0	0		ENSG00000168754|ENST00000490605|FAM178B	ENSG00000168754|ENST00000490605|FAM178B	ENSG00000168754|ENST00000490605|FAM178B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.8743896484375	2	602.334621	1202.65469	0.61896	0.00037282	-0.72458	-0.00043644	-0.10562	-6.362E-05	602.3339564699637	57.162	0.45403	57.162	57.012	57.466	0					26	16	2	0	0	0	0.32477	1	13831	13831		11.495	0	1	238020			60119	6296	34528	34529	73360	73360					0.06146836991752025
YSVTSMCLFA	10	Unmodified	_YSVTSMCLFA_					0	0	0			REV__ENST00000261681.8_1_14:67800483-67800651:+|nuORF	REV__ENST00000261681.8_1_14:67800483-67800651:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	561.2540893554688	2	561.253928	1120.4933	0.62178	0.00034897	-0.4185	-0.00023488	0.20328	0.00011409	561.2537337362153	74.551	0.75592	74.551	74.313	75.069	0					57	26	3	0	0	0	0.30958	1	19082	19082		19.257	0	1	1122800	+		60120	19600	34529	34530	73361	73361					-0.062123716373434945
YSVVLPTV	8	Unmodified	_YSVVLPTV_					0	0	0		nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	nc|ENSG00000186635|Q96P48-2|ARAP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	438.76312255859375	2	439.255111	876.49567	0.15635	6.8677E-05	-1.939	-0.00085171	-1.7826	-0.00078303	439.25496700444813	68.592	0.57896	68.573	68.396	68.975	-0.01915					27	20	2	0	0	0	0.3366	1	17249	17249		7.9102	0	1	159100			60121	7631	34530	34531	73362	73362					0.05248168154287214
YSVVVEDEL	9	Unmodified	_YSVVVEDEL_					0	0	0			REV__ENSG00000112159|ENST00000369393|MDN1	REV__ENSG00000112159|ENST00000369393|MDN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.802734375	2	526.760955	1051.50736	0.38467	0.00020263	0.39811	0.00020971	0.78278	0.00041234	526.7611048124488	64.898	0.72363	64.986	64.629	65.352	0.088882					39	26	2	0	0	0	0.2451	1	16126	16126		15.847	1.0089	1	325670	+		60122	14758	34531	34532	73363	73363					-0.016336796130417497
YSWYINEMN	9	Unmodified	_YSWYINEMN_					0	0	0			REV__ENST00000552075.5_1_12:62261201-62652582:-|nuORF	REV__ENST00000552075.5_1_12:62261201-62652582:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.2588500976562	2	610.258056	1218.50156	0.38411	0.00023441	0.70049	0.00042748	1.0846	0.00066188	610.2583107942029	26.429	0.52507	26.407	26.236	26.762	-0.022236					25	17	2	0	0	0	0.35116	1	4343	4343		0	0	1	126500	+		60123	22174	34532	34533	73364	73364					-0.09895101396364225
YSWYINEMN	9	Unmodified	_YSWYINEMN_					0	0	0			REV__ENST00000552075.5_1_12:62261201-62652582:-|nuORF	REV__ENST00000552075.5_1_12:62261201-62652582:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	610.258056	1218.50156	0.22954	0.00014008	0.90966	0.00055513	1.1392	0.00069521	610.2585473480699	26.442	0.51233	26.442	26.189	26.701	0	0.021379	0.00016947	NaN	0	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135900	+		60124	22174	34532	34533							-0.09895101396364225
YSYCRCTRTLK	11	Unmodified	_YSYCRCTRTLK_					0	0	0		Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|14|1|sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|14|1|sense	Harlequin-int_dup446|chr19:20426579-20429510:-|1.2092047156725605|0.0242048410209908|5.64|525.0|14|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.1612854003906	3	465.228685	1392.66423	-0.034323	-1.5968E-05	-1.8669	-0.00086853	-1.9012	-0.0008845	465.2281082372913	24.873	0.35518	24.873	24.575	24.93	0					17	11	2	0	0	0	0.3325	1	3802	3802		4.1166	0.79699	1	43100			60125	12382	34533	34534	73365	73365					-0.01640041266045955
YSYDYEFDL	9	Unmodified	_YSYDYEFDL_					0	0	0		ENSG00000105127|ENST00000269701|AKAP8;ENST00000537303.5_1_19:15472501-15484105:-|nuORF	ENSG00000105127|ENST00000269701|AKAP8	ENSG00000105127|ENST00000269701|AKAP8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.7511596679688	2	607.748044	1213.48154	0.43768	0.000266	3.9024	0.0023717	4.3401	0.0026377	607.7497580559823	71.433	0.28175	71.489	71.319	71.601	0.056572					14	9	2	0	0	0	0.30623	1	18169	18169		7.9102	1.187	1	265420			60126	1947	34534	34535	73366	73366					-0.11666573855336537
YSYDYEFDL	9	Unmodified	_YSYDYEFDL_					0	0	0		ENSG00000105127|ENST00000269701|AKAP8;ENST00000537303.5_1_19:15472501-15484105:-|nuORF	ENSG00000105127|ENST00000269701|AKAP8	ENSG00000105127|ENST00000269701|AKAP8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	607.748044	1213.48154	0.40774	0.00024781	3.6958	0.0022461	4.1035	0.0024939	607.7499800504905	71.576	0.31767	71.549	71.368	71.685	-0.027275	0.029809	-0.00010528	NaN	7.9102	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348490			60127	1947	34534	34535							-0.11666573855336537
YSYLWLDI	8	Unmodified	_YSYLWLDI_					0	0	0			REV__nc|ENSG00000036549|Q8IYH5-3|ZZZ3	REV__nc|ENSG00000036549|Q8IYH5-3|ZZZ3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.326171875	2	536.771126	1071.5277	0.51348	0.00027562	-1.7386	-0.00093325	-1.2252	-0.00065763	536.7712544515491	85.712	0.66142	85.796	85.391	86.053	0.084251					38	24	2	0	0	0	0.34131	1	22482	22482		12.532	0	1	145400	+		60128	22881	34535	34536	73367	73367					-0.0052046416258235695
YSYNICSDTL	10	Unmodified	_YSYNICSDTL_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	REV__nc|ENSG00000144406|Q8N2C7-4|UNC80	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.7704467773438	2	589.755346	1177.49614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.351	1	62.448	61.948	62.948	0.096985								0	0	0	0.35611	1	15370	15370		12.241	0.60036	1		+		60129	16232	34536	34537	73368	73368					-0.08550824978829041
YSYRDYILS	9	Unmodified	_YSYRDYILS_					0	0	0		ENST00000506896.1_1_4:186131373-186188125:+|nuORF;nc|ENSG00000109762|Q9H3E2|SNX25;ENSG00000109762|ENST00000652585|SNX25	ENST00000506896.1_1_4:186131373-186188125:+|nuORF	ENST00000506896.1_1_4:186131373-186188125:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.7705078125	2	590.287671	1178.56079	0.45146	0.00026649	-3.7494	-0.0022132	-3.298	-0.0019467	590.7869837221741	62.448	0.1372	62.439	62.353	62.49	-0.0085564					6	4	2	0	0	0	0.25526	1	15383	15383		7.9102	0.62092	1	67038			60130	2270	34537	34538	73369	73369					-0.02134882110522085
YSYSLTEML	9	Unmodified	_YSYSLTEML_					0	0	0			REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3324584960938	2	553.757358	1105.50016	0.52177	0.00028893	0.070009	3.8768E-05	0.59178	0.0003277	553.7569203802632	86.612	0.24673	86.612	86.429	86.675	0					18	10	2	0	0	0	0.25202	1	22797	22797		6.7232	0	1	101880	+		60131	15270	34538	34539	73370	73370					-0.04836735485127974
YSYYKDML	8	Unmodified	_YSYYKDML_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.79833984375	2	541.746793	1081.47903	0.47179	0.00025559	0.715	0.00038735	1.1868	0.00064294	541.7471037403494	67.217	0.75687	67.295	66.871	67.628	0.078041					57	26	3	0	0	0	0.3408	1	16953	16953		14.838	2.3067	1	331610			60132	5223	34539	34540	73371	73371					-0.058447007939776086
YTAFPDFRGAV	11	Unmodified	_YTAFPDFRGAV_					0	0	0		ENST00000524486.5_1_11:804698-804929:-|nuORF	ENST00000524486.5_1_11:804698-804929:-|nuORF	ENST00000524486.5_1_11:804698-804929:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.3167114257812	2	622.308938	1242.60332	0.25342	0.00015771	2.6854	0.0016712	2.9389	0.0018289	622.3093388688302	64.894	2.01	64.894	63.997	66.007	0					270	73	6	0	0	0	0.32017	1	16081	16081		20.415	2.0414	1	5652600			60133	11520	34540	34541	73372	73372					-0.008274869822798792
YTAFPDFRGAV	11	Unmodified	_YTAFPDFRGAV_					0	0	0		ENST00000524486.5_1_11:804698-804929:-|nuORF	ENST00000524486.5_1_11:804698-804929:-|nuORF	ENST00000524486.5_1_11:804698-804929:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	623.316650390625	2	622.308938	1242.60332	0.084685	5.27E-05	2.8872	0.0017967	2.9719	0.0018494	622.30943591155	64.774	1.7494	64.867	64.066	65.815	0.09288					240	64	6	0	0	0	0.25499	1	16223	16223		26.268	4.5215	1	5693100			60134	11520	34540	34541	73373	73373					-0.008274869822798792
YTAFPDFRGAV	11	Unmodified	_YTAFPDFRGAV_					0	0	0		ENST00000524486.5_1_11:804698-804929:-|nuORF	ENST00000524486.5_1_11:804698-804929:-|nuORF	ENST00000524486.5_1_11:804698-804929:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	623.3168334960938	2	622.308938	1242.60332	0.080422	5.0047E-05	3.1162	0.0019392	3.1966	0.0019893	622.309552216226	64.896	1.8184	64.885	64.043	65.861	-0.011337					260	66	6	0	0	0	0.21521	2	16252	16075;16252		29.841	2.6173	1	6307600			60135	11520	34540	34541	73374;73375	73375					-0.008274869822798792
YTAGGLFKESW	11	Unmodified	_YTAGGLFKESW_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.8087158203125	2	629.808771	1257.60299	0.78417	0.00049388	-0.22604	-0.00014236	0.55813	0.00035151	629.8085378599538	60.753	0.44413	60.753	60.548	60.992	0					33	15	3	0	0	0	0.14098	1	14876	14876		36.506	8.8774	1	914600			60136	4964	34541	34542	73376	73376					-0.015509067021639567
YTAGGLFKESW	11	Unmodified	_YTAGGLFKESW_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	629.8088989257812	2	629.808771	1257.60299	0.53811	0.00033891	0.075175	4.7346E-05	0.61329	0.00038625	629.8087422550607	60.766	0.43074	60.863	60.579	61.01	0.096985					31	14	3	0	0	0	0.14098	1	14853	14853		36.506	8.8774	1	797820			60137	4964	34541	34542	73377	73377					-0.015509067021639567
YTAGGLFKESW	11	Unmodified	_YTAGGLFKESW_					0	0	0		ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	ENSG00000151474|ENST00000357447|FRMD4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.8090209960938	2	629.808771	1257.60299	0.68401	0.0004308	0.0056855	3.5808E-06	0.6897	0.00043438	629.8087904092534	60.849	0.37222	60.839	60.596	60.968	-0.0094566					34	13	3	0	0	0	0.14098	1	14877	14877		36.506	8.8774	1	1081200			60138	4964	34541	34542	73378	73378					-0.015509067021639567
YTAIGGTVLTF	11	Unmodified	_YTAIGGTVLTF_					0	0	0		ENST00000502722.1_1_5:77784722-77786992:-|nuORF;ENSG00000145685|ENST00000380345|LHFPL2	ENST00000502722.1_1_5:77784722-77786992:-|nuORF	ENST00000502722.1_1_5:77784722-77786992:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.280029296875	2	571.808239	1141.60193	0.24684	0.00014114	0.70328	0.00040214	0.95011	0.00054328	571.8084644050822	53.652	0.39463	53.708	53.585	53.98	0.056255					22	14	2	0	0	0	0.3239	1	12700	12700		8.1555	8.1555	1	129590			60139	4663	34542	34543	73379	73379					0.03678878928940321
YTAILMFTY	9	Unmodified	_YTAILMFTY_					0	0	0		ENST00000446465.2_1_3:136574579-136574645:+|nuORF	ENST00000446465.2_1_3:136574579-136574645:+|nuORF	ENST00000446465.2_1_3:136574579-136574645:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.30322265625	2	561.780636	1121.54672	0.0022054	1.2389E-06	-3.2292	-0.0018141	-3.227	-0.0018129	561.7785931979929	65.038	0.53788	65.027	64.69	65.227	-0.011337					30	19	2	0	0	0	0.21905	1	16186	16186		23.148	0	1	359140			60140	10597	34543	34544	73380	73380					-0.009192508631485907
YTAKAKKTGKV	11	Unmodified	_YTAKAKKTGKV_					0	0	0		ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.287353515625	2	597.86388	1193.71321	0.59668	0.00035673	0.15775	9.4311E-05	0.75442	0.00045104	597.8639460157807	57.087	0.80952	57.087	56.686	57.495	0					92	29	4	0	0	0	0.33119	1	13859	13859		5.7319	1.7875	1	2110800			60141	5976	34544	34545	73381	73381					0.12409938356881867
YTAKAKKTGKV	11	Unmodified	_YTAKAKKTGKV_					0	0	0		ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	ENSG00000165548|ENST00000298351|TMEM63C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.28759765625	2	597.86388	1193.71321	0.52565	0.00031427	0.25545	0.00015272	0.78109	0.00046699	597.8639957421493	56.946	0.8274	57.025	56.603	57.43	0.078671					93	30	4	0	0	0	0.33119	1	13809	13809		5.7319	1.7875	1	2401700			60142	5976	34544	34545	73382	73382					0.12409938356881867
YTAKALAEVAF	11	Unmodified	_YTAKALAEVAF_					0	0	0			REV__nc|ENSG00000133392|P35749-4|MYH11	REV__nc|ENSG00000133392|P35749-4|MYH11	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.7720947265625	2	592.321514	1182.62847	0.066588	3.9442E-05	-0.57828	-0.00034253	-0.51169	-0.00030309	592.3210127364626	60.196	0.51952	60.196	59.949	60.469	0					38	18	3	0	0	0	0.32367	1	14784	14784		18.373	7.5492	1	1495000	+		60143	15621	34545	34546	73383	73383					0.04446567820264136
YTAKELNV	8	Unmodified	_YTAKELNV_					0	0	0		nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENSG00000102230|ENST00000379144|PCYT1B	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.25311279296875	2	469.2531	936.491647	0.69216	0.0003248	-0.4398	-0.00020638	0.25235	0.00011842	469.25275018157134	33.796	0.7208	33.863	33.596	34.317	0.06636					47	25	3	0	0	0	0.15072	1	6599	6599		51.63	26.23	1	502180			60144	1757	34546	34547	73384	73384					0.0208607866057946
YTAKELNV	8	Unmodified	_YTAKELNV_					0	0	0		nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENSG00000102230|ENST00000379144|PCYT1B	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	469.2531	936.491647	0.42435	0.00019913	0.10099	4.7391E-05	0.52534	0.00024652	469.2528522966211	33.999	0.57876	33.999	33.728	34.306	0	0.089732	0.00016106	NaN	51.63	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462280			60145	1757	34546	34547							0.0208607866057946
YTAKELNV	8	Unmodified	_YTAKELNV_					0	0	0		nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENSG00000102230|ENST00000379144|PCYT1B	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	nc|ENSG00000102230|Q9Y5K3-2|PCYT1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	469.2531	936.491647	0.072588	3.4062E-05	0.28231	0.00013247	0.3549	0.00016654	469.2530548818217	33.8	0.57611	33.866	33.633	34.209	0.0667	-0.043006	0.00033123	NaN	51.63	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	589740			60146	1757	34546	34547							0.0208607866057946
YTALYRKML	9	Unmodified	_YTALYRKML_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.2763671875	2	579.820627	1157.6267	0.12386	7.1817E-05	-1.9874	-0.0011523	-1.8635	-0.0010805	579.8190708377114	48.979	0.55875	49.011	48.852	49.411	0.032047					27	19	2	0	0	0	0.25879	1	11339	11339		4.756	0.81161	1	277380			60147	2677	34547	34548	73385	73385					0.05419235530689548
YTALYRKML	9	Unmodified	_YTALYRKML_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	579.820627	1157.6267	0.3853	0.00022341	-2.7281	-0.0015818	-2.3428	-0.0013584	579.8189171104218	49.001	0.57905	49.001	48.883	49.462	0	-0.053577	-0.000214	NaN	4.756	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	456880			60148	2677	34547	34548							0.05419235530689548
YTALYRKML	9	Unmodified	_YTALYRKML_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	579.820627	1157.6267	0.27972	0.00016219	-2.9653	-0.0017193	-2.6855	-0.0015571	579.8185715785655	49.107	0.52389	49.152	49.016	49.54	0.044891	0.097034	-0.00048899	NaN	4.756	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309800			60149	2677	34547	34548							0.05419235530689548
YTARDQDEMN	10	Unmodified	_YTARDQDEMN_					0	0	0		ENSG00000174705|ENST00000311601|SH3PXD2B	ENSG00000174705|ENST00000311601|SH3PXD2B	ENSG00000174705|ENST00000311601|SH3PXD2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.7557373046875	2	621.756409	1241.49827	-0.053555	-3.3298E-05	-0.60076	-0.00037352	-0.65431	-0.00040682	621.7558675343251	96.654	0.57169	96.724	96.423	96.994	0.070465					88	55	2	0	0	0	0.39935	1	25803	25803		3.5965	1.5367	1	112460			60150	6811	34548	34549	73386	73386					-0.11282396241017523
YTARDQDEMN	10	Unmodified	_YTARDQDEMN_					0	0	0		ENSG00000174705|ENST00000311601|SH3PXD2B	ENSG00000174705|ENST00000311601|SH3PXD2B	ENSG00000174705|ENST00000311601|SH3PXD2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.7559814453125	2	621.756409	1241.49827	0.22282	0.00013854	-0.80206	-0.00049869	-0.57924	-0.00036015	621.755687002371	96.706	0.6072	96.701	96.424	97.031	-0.0055466					113	60	3	0	0	0	0.39935	1	25823	25823		3.5965	1.5367	1	173590			60151	6811	34548	34549	73387	73387					-0.11282396241017523
YTARDQDEMN	10	Unmodified	_YTARDQDEMN_					0	0	0		ENSG00000174705|ENST00000311601|SH3PXD2B	ENSG00000174705|ENST00000311601|SH3PXD2B	ENSG00000174705|ENST00000311601|SH3PXD2B	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	621.756409	1241.49827	0.01609	1.0004E-05	-0.60369	-0.00037535	-0.5876	-0.00036535	621.7557120131906	96.693	0.40753	96.693	96.539	96.947	0	-0.012756	0.0001064	NaN	3.5965	54	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74812			60152	6811	34548	34549							-0.11282396241017523
YTATGYPSLF	10	Unmodified	_YTATGYPSLF_					0	0	0		nc|ENSG00000211793|A0A087WT02|TRAV9-2	nc|ENSG00000211793|A0A087WT02|TRAV9-2	nc|ENSG00000211793|A0A087WT02|TRAV9-2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2887573242188	2	560.27149	1118.52843	0.46057	0.00025804	1.0847	0.00060771	1.5452	0.00086575	560.2732043710241	64.372	1.0678	64.362	63.881	64.948	-0.0095291					102	38	3	0	0	0	0.29978	1	16123	16123		20.454	0	1	1866800			60153	12929	34549	34550	73388	73388					-0.02609669513526569
YTCMGPFAKC	10	Unmodified	_YTCMGPFAKC_					0	0	0			REV__nc|ENSG00000138829|P35556-2|FBN2	REV__nc|ENSG00000138829|P35556-2|FBN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.266845703125	2	560.734848	1119.45514	0.28344	0.00015894	1.4951	0.00083835	1.7785	0.00099728	560.7354198369015	70.185	0.53112	70.163	69.937	70.469	-0.022079					37	18	3	0	0	0	0.31629	1	17814	17814		10.074	1.4806	1	342790	+		60154	15961	34550	34551	73389	73389					-0.09980580823662422
YTDALQPLTL	10	Unmodified	_YTDALQPLTL_					0	0	0			REV__nc|ENSG00000100031|P19440-2|GGT1	REV__nc|ENSG00000100031|P19440-2|GGT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2796020507812	2	567.805697	1133.59684	0.27836	0.00015805	1.0668	0.00060575	1.3452	0.0007638	567.8059640123766	70.44	0.33218	70.44	70.273	70.605	0					20	11	2	0	0	0	0.31237	1	17883	17883		16.149	1.3108	1	138630	+		60155	14152	34551	34552	73390	73390					0.035385750663408544
YTDEAVGEDVP	11	Unmodified	_YTDEAVGEDVP_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.28759765625	2	597.761683	1193.50881	0.51091	0.0003054	1.6262	0.00097206	2.1371	0.0012775	597.7626691014051	57.258	0.13631	57.341	57.264	57.401	0.082439					6	4	2	0	0	0	0.329	1	13809	13809		9.3831	1.473	1	95964	+		60156	15528	34552	34553	73391	73391					-0.08020090314948902
YTDEAVGEDVP	11	Unmodified	_YTDEAVGEDVP_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	597.761683	1193.50881	0.24765	0.00014804	2.5777	0.0015409	2.8254	0.0016889	598.2642829747161	57.418	0.29994	57.4	57.197	57.497	-0.017197	0.02982	0.00073965	NaN	9.3831	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175420	+		60157	15528	34552	34553							-0.08020090314948902
YTDEEDDYD	9	Unmodified	_YTDEEDDYD_					0	0	0		nc|ENSG00000137747|Q9BYE2-4|TMPRSS13;nc|ENSG00000137747|Q9BYE2-3|TMPRSS13;nc|ENSG00000137747|Q9BYE2-2|TMPRSS13;ENSG00000137747|ENST00000524993|TMPRSS13;nc|ENSG00000137747|Q9BYE2|TMPRSS13	nc|ENSG00000137747|Q9BYE2-4|TMPRSS13	nc|ENSG00000137747|Q9BYE2-4|TMPRSS13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.32666015625	2	582.696206	1163.37786	0.35309	0.00020574	0.13875	8.085E-05	0.49184	0.00028659	582.6961057175333	62.73	0.32138	62.825	62.663	62.985	0.095722					19	11	2	0	0	0	0.26145	1	15521	15521		2.0598	0.40713	1	155170			60158	4071	34553	34554	73392	73392					-0.19729525753655253
YTDEEDDYD	9	Unmodified	_YTDEEDDYD_					0	0	0		nc|ENSG00000137747|Q9BYE2-4|TMPRSS13;nc|ENSG00000137747|Q9BYE2-3|TMPRSS13;nc|ENSG00000137747|Q9BYE2-2|TMPRSS13;ENSG00000137747|ENST00000524993|TMPRSS13;nc|ENSG00000137747|Q9BYE2|TMPRSS13	nc|ENSG00000137747|Q9BYE2-4|TMPRSS13	nc|ENSG00000137747|Q9BYE2-4|TMPRSS13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.32666015625	2	582.696206	1163.37786	0.26557	0.00015475	0.18928	0.00011029	0.45485	0.00026504	582.6963537601285	62.914	0.28765	62.906	62.675	62.963	-0.0085526					16	10	2	0	0	0	0.26145	1	15513	15513		2.0598	0.40713	1	165910			60159	4071	34553	34554	73393	73393					-0.19729525753655253
YTDGYSPTLAL	11	Unmodified	_YTDGYSPTLAL_					0	0	0			REV__ENST00000498020.1_1_6:32904922-32905177:-|nuORF	REV__ENST00000498020.1_1_6:32904922-32905177:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.3300170898438	2	600.792786	1199.57102	0.75985	0.00045651	-0.10607	-6.3729E-05	0.65378	0.00039279	600.7925848658474	45.505	0.46632	45.505	45.366	45.832	0					21	16	2	0	0	0	0.32667	1	10169	10169		13.042	1.4022	1	116010	+		60160	19186	34554	34555	73394	73394					-0.020783191759164765
YTDKLFKF	8	Unmodified	_YTDKLFKF_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	531.2871704101562	2	531.286943	1060.55933	0.61101	0.00032462	0.49323	0.00026205	1.1042	0.00058667	531.2869740934358	53.362	0.87364	53.362	52.932	53.806	0					61	32	3	0	0	0	0.0098283	2	12572	12572;12632		118.07	64.236	1	710270			60161	1455	34555	34556	73395;73396	73395					0.031475285913757034
YTDKLFKF	8	Unmodified	_YTDKLFKF_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2869262695312	2	531.286943	1060.55933	0.47204	0.00025079	0.20247	0.00010757	0.67451	0.00035836	531.2870024739397	53.271	0.7902	53.328	53.079	53.869	0.056255					57	29	3	0	0	0	0.016352	1	12581	12581		106.94	57.007	1	1050500			60162	1455	34555	34556	73397	73397					0.031475285913757034
YTDKLFKF	8	Unmodified	_YTDKLFKF_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.2874145507812	2	531.286943	1060.55933	0.5731	0.00030448	-0.2074	-0.00011019	0.3657	0.00019429	531.2871458002563	53.609	0.84462	53.6	53.247	54.092	-0.0096054					47	31	2	0	0	0	0.011583	1	12663	12663		114.65	64.716	1	835230			60163	1455	34555	34556	73398	73398					0.031475285913757034
YTDLCVLLE	9	Unmodified	_YTDLCVLLE_					0	0	0		ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.783935546875	2	534.767726	1067.5209	0.6015	0.00032166	1.298	0.00069413	1.8995	0.0010158	534.7680937554985	86.863	0.35556	86.858	86.723	87.078	-0.0056229					23	13	2	0	0	0	0.28128	1	22860	22860		11.64	0	1	158970			60164	2667	34556	34557	73399	73399					-0.010161451054727877
YTDMSYKLHP	10	Unmodified	_YTDMSYKLHP_					0	0	0			REV__UEVLD|p.F35L|1|0.31|ENSG00000151116|chr11:18578746-18578746|G/T|missense_variant	REV__UEVLD|p.F35L|1|0.31|ENSG00000151116|chr11:18578746-18578746|G/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	627.7949829101562	2	627.794806	1253.57506	-0.12851	-8.0675E-05	-0.33739	-0.00021181	-0.4659	-0.00029249	627.7947662260228	15.562	0.34821	15.452	15.23	15.579	-0.10981					19	11	2	0	0	0	0.41642	1	1081	1081		0.45834	0	1	57540	+		60165	23350	34557	34558	73400	73400					-0.041585529538906485
YTDRFHLIL	9	Unmodified	_YTDRFHLIL_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3214111328125	2	589.321848	1176.62914	0.42057	0.00024785	-1.1071	-0.00065242	-0.6865	-0.00040457	589.3211955550358	38.399	0.51614	38.497	38.266	38.782	0.097527					28	18	2	0	0	0	0.23767	1	8027	8027		18.146	0	1	273560			60166	3427	34558	34559	73401	73401					0.04789407260000189
YTDRVFTFI	9	Unmodified	_YTDRVFTFI_					0	0	0		ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.7848510742188	2	581.300581	1160.58661	0.42198	0.0002453	-0.50607	-0.00029418	-0.084094	-4.8884E-05	581.3002148219872	79.27	0.34496	79.331	79.12	79.465	0.061417					23	16	2	0	0	0	0.24636	1	20573	20573		16.149	6.0752	1	105200			60167	7525	34559	34560	73402	73402					0.012740121317619924
YTEALEPLF	9	Unmodified	_YTEALEPLF_					0	0	0		nc|ENSG00000171495|Q7Z745-2|MROH2B;ENSG00000171495|ENST00000399564|MROH2B	nc|ENSG00000171495|Q7Z745-2|MROH2B	nc|ENSG00000171495|Q7Z745-2|MROH2B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.2579345703125	2	541.773865	1081.53318	0.74684	0.00040462	-0.090195	-4.8865E-05	0.65664	0.00035575	541.7738250705191	85.929	2.232	85.92	84.818	87.05	-0.0090027					198	86	4	0	0	0	0.21303	1	22879	22879		21.747	0	1	9105600			60168	6549	34560	34561	73403	73403					-0.004327853707764007
YTEIAGMQRFG	11	Unmodified	_YTEIAGMQRFG_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;nc|ENSG00000132549|Q7Z7G8-4|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.8723449707031	3	424.872895	1271.59686	-0.22382	-9.5095E-05	-0.54237	-0.00023044	-0.76619	-0.00032553	424.87248417256245	25.812	0.62868	25.812	25.504	26.133	0					41	21	3	0	0	0	0.46059	1	4162	4162		1.3296	0	1	221900			60169	3647	34561	34562	73404	73404					-0.02807748205327698
YTEQVSSPVS	10	Unmodified	_YTEQVSSPVS_					0	0	0		nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF	nc|ENSG00000003393|Q96Q42-3|ALS2	nc|ENSG00000003393|Q96Q42-3|ALS2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	548.8059692382812	2	548.761486	1095.50842	0.27074	0.00014857	0.10755	5.9017E-05	0.37829	0.00020759	548.7611449205339	52.124	0.42916	52.123	51.982	52.411	-0.00080872					26	15	3	0	0	0	0.28569	1	12188	12188		20.415	0	1	245810			60170	11050	34562	34563	73405	73405					-0.03551465244117935
YTERLLYCVL	10	Unmodified	_YTERLLYCVL_					0	0	0			REV__ENST00000510365.5_1_4:8376552-8417570:-|nuORF	REV__ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.8929138183594	3	424.893408	1271.65839	-0.070767	-3.0068E-05	0.021058	8.9475E-06	-0.049709	-2.1121E-05	424.89334749267186	19.443	1.017	19.387	19.017	20.034	-0.055693					100	35	4	0	0	0	0.36786	2	2180	2180;2282		5.4027	0	1	476760	+		60171	13983	34563	34564	73406;73407	73406					0.033431834939619876
YTEVQKKYVFF	11	Unmodified	_YTEVQKKYVFF_					0	0	0			REV__ENST00000459659.1_1_3:33863478-33868168:+|nuORF	REV__ENST00000459659.1_1_3:33863478-33868168:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.8160400390625	3	484.590494	1450.74965	-0.2228	-0.00010797	-0.49639	-0.00024054	-0.71919	-0.00034851	484.5905098502166	60.142	0.48943	60.142	59.897	60.387	0					18	17	2	0	0	0	0.33122	1	14748	14748		7.0371	0	1	601960	+		60172	21192	34564	34565	73408	73408					0.04230770462913824
YTEVRTHYGF	10	Unmodified	_YTEVRTHYGF_					0	0	0		FREM2|p.K2590R|1|0.09|ENSG00000150893|chr13:38864392-38864392|A/G|missense_variant	FREM2|p.K2590R|1|0.09|ENSG00000150893|chr13:38864392-38864392|A/G|missense_variant	FREM2|p.K2590R|1|0.09|ENSG00000150893|chr13:38864392-38864392|A/G|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	424.8729248046875	3	424.871772	1271.59349	-0.34169	-0.00014517	2.2331	0.00094878	1.8914	0.0008036	424.87278409432946	25.851	0.62236	25.812	25.556	26.178	-0.03867					43	21	3	0	0	0	0.39745	1	4174	4174		1.9064	0.57673	1	239670			60173	12346	34565	34566	73409	73409					-0.03144674987674989
YTEVRTIFG	9	Unmodified	_YTEVRTIFG_					0	0	0			REV__SMC3|p.I824F|1|0.41|ENSG00000108055|chr10:110600481-110600481|A/T|missense_variant	REV__SMC3|p.I824F|1|0.41|ENSG00000108055|chr10:110600481-110600481|A/T|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.3001098632812	2	543.284931	1084.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.874	1	54.937	54.437	55.437	0.063202								0	0	0	0.20238	1	13062	13062		21.747	1.293	1		+		60174	23307	34566	34567	73410	73410					0.0164143909764789
YTEWLERY	8	Unmodified	_YTEWLERY_					0	0	0			REV__ENSG00000214891|ENST00000617704|TRIM64C	REV__ENSG00000214891|ENST00000617704|TRIM64C	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.2868041992188	2	580.274564	1158.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.282	1	72.282	71.782	72.782	0								0	0	0	0.33941	1	18418	18418		19.439	4.6007	1		+		60175	19067	34567	34568	73411	73411					-0.03835151281987237
YTFCCFYF	8	Unmodified	_YTFCCFYF_					0	0	0		ENST00000280527.6_1_2:36776441-36776603:+|nuORF	ENST00000280527.6_1_2:36776441-36776603:+|nuORF	ENST00000280527.6_1_2:36776441-36776603:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.2117309570312	2	547.211532	1092.40851	0.40956	0.00022412	0.055498	3.0369E-05	0.46506	0.00025449	547.211516089155	81.466	0.56356	81.466	81.256	81.82	0					62	24	4	0	0	0	0.45942	1	21234	21234		2.5775	0	1	438130			60176	9114	34568	34569	73412	73412					-0.13399697383306375
YTFDWTMLK	9	Oxidation (M)	_YTFDWTM(Oxidation (M))LK_		YTFDWTM(1)LK		YTFDWTM(120)LK	0	0	1		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.7866821289062	2	610.78645	1219.55835	0.29845	0.00018229	-0.031978	-1.9532E-05	0.26647	0.00016276	610.7864461085948	64.871	0.7821	64.871	64.591	65.373	0					84	28	4	0	0	0	0.0010968	1	16171	16171		121.53	73.785	1	1087700			60177	2523	34569	34570	73413	73413		315			-0.04265053839867505
YTFDWTMLK	9	Oxidation (M)	_YTFDWTM(Oxidation (M))LK_		YTFDWTM(1)LK		YTFDWTM(90)LK	0	0	1		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.7869262695312	2	610.78645	1219.55835	0.40149	0.00024522	-0.07385	-4.5107E-05	0.32764	0.00020012	610.7864465394392	64.797	0.66476	64.89	64.582	65.247	0.092888					71	24	4	0	0	0	0.0045319	1	16158	16158		90.135	50.185	1	1021900			60178	2523	34569	34570	73414	73414		315			-0.04265053839867505
YTFDWTMLK	9	Oxidation (M)	_YTFDWTM(Oxidation (M))LK_		YTFDWTM(1)LK		YTFDWTM(110)LK	0	0	1		nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000180138|ENST00000379800|CSNK1A1L;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	nc|ENSG00000113712|P48729-3|CSNK1A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.7869262695312	2	610.78645	1219.55835	0.16503	0.0001008	0.26101	0.00015942	0.42604	0.00026022	610.7866779924522	64.896	0.7095	64.885	64.578	65.288	-0.011337					68	25	4	0	0	0	0.001957	1	16182	16182		110.55	62.804	1	1226900			60179	2523	34569	34570	73415	73415		315			-0.04265053839867505
YTFGSLPGL	9	Unmodified	_YTFGSLPGL_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.75042724609375	2	477.750193	953.485833	0.56945	0.00027206	-0.5195	-0.00024819	0.049958	2.3867E-05	477.75015372914993	77.803	1.6848	77.803	77.418	79.103	0					214	64	6	0	0	0	0.00010798	6	20087	20037;20087;20134;20184;20234;20288		139.54	95.686	1	18099000			60180	632	34570	34571	73416;73417;73418;73419;73420;73421	73417					0.007229801489074816
YTFGSLPGL	9	Unmodified	_YTFGSLPGL_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	477.2307434082031	2	477.750193	953.485833	0.13795	6.5904E-05	0.36852	0.00017606	0.50647	0.00024197	477.7501306085945	81.196	0.48902	81.196	80.904	81.393	0					39	23	2	0	0	0	0.21905	1	21172	21172		23.148	5.0134	1	80840			60181	632	34570	34571	73422	73422					0.007229801489074816
YTFGSLPGL	9	Unmodified	_YTFGSLPGL_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.7503662109375	2	477.750193	953.485833	0.61722	0.00029487	-0.58173	-0.00027792	0.035483	1.6952E-05	477.7501708990566	77.767	1.7459	77.822	77.43	79.176	0.055412					202	66	5	0	0	0	0.00010798	7	20116	20018;20067;20116;20167;20219;20267;20284		139.54	95.686	1	18948000			60182	632	34570	34571	73423;73424;73425;73426;73427;73428;73429	73425					0.007229801489074816
YTFGSLPGL	9	Unmodified	_YTFGSLPGL_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	477.2306823730469	2	477.750193	953.485833	0.0056576	2.7029E-06	0.48058	0.0002296	0.48624	0.0002323	477.7502416766523	81.004	0.63168	81.069	80.805	81.436	0.065094					45	31	2	0	0	0	0.21905	1	21096	21096		23.148	3.7094	1	85227			60183	632	34570	34571	73430	73430					0.007229801489074816
YTFGSLPGL	9	Unmodified	_YTFGSLPGL_					0	0	0		ENSG00000047457|ENST00000264613|CP;ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENSG00000047457|ENST00000264613|CP	ENSG00000047457|ENST00000264613|CP	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	477.75054931640625	2	477.750193	953.485833	0.76064	0.0003634	-0.67866	-0.00032423	0.081975	3.9163E-05	477.750088708714	77.828	1.6724	77.796	77.375	79.047	-0.031334					216	64	6	0	0	0	0.00010798	6	20085	20085;20126;20168;20219;20267;20301		139.54	95.686	1	19063000			60184	632	34570	34571	73431;73432;73433;73434;73435;73436	73431					0.007229801489074816
YTFLHPPPL	9	Unmodified	_YTFLHPPPL_					0	0	0			REV__ENSG00000176083|ENST00000349618|ZNF683	REV__ENSG00000176083|ENST00000349618|ZNF683	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.797119140625	2	542.794935	1083.57532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.972	1	99.972	99.472	100.47	0								0	0	0	0.25631	1	26728	26728		4.3292	1.0479	1		+		60185	17919	34571	34572	73437	73437					0.03687234828294095
YTFTKQIT	8	Unmodified	_YTFTKQIT_					0	0	0			REV__nc|ENSG00000083067|Q9HCF6-10|TRPM3	REV__nc|ENSG00000083067|Q9HCF6-10|TRPM3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	501.2580261230469	2	501.26875	1000.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.069	1	82.045	81.545	82.545	-0.02404								0	0	0	0.36336	1	21389	21389		8.5933	0.43775	1		+		60186	13927	34572	34573	73438	73438					0.0227065169465277
YTFTNTFII	9	Unmodified	_YTFTNTFII_					0	0	0		nc|ENSG00000254838|Q7Z2Y8|GVINP1;ENST00000526769.3_1_11:6735844-6741409:-|nuORF	nc|ENSG00000254838|Q7Z2Y8|GVINP1	nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.8056640625	2	560.289682	1118.56481	0.27594	0.00015461	-1.7705	-0.00099201	-1.4946	-0.0008374	560.2887493636928	73.983	0.34262	74.036	73.926	74.268	0.052361					18	11	2	0	0	0	0.22061	1	18990	18990		24.021	5.8742	1	430300			60187	12981	34573	34574	73439	73439					0.010272073831856687
YTFTSYGISW	10	Unmodified	_YTFTSYGISW_					0	0	0		nc|ENSG00000211945|A0A0C4DH31|IGHV1-18	nc|ENSG00000211945|A0A0C4DH31|IGHV1-18	nc|ENSG00000211945|A0A0C4DH31|IGHV1-18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.784912109375	2	612.782222	1223.54989	-0.02009	-1.2311E-05	3.5411	0.0021699	3.521	0.0021576	613.2852280427841	59.885	0.33082	59.885	59.675	60.006	0					17	11	2	0	0	0	0.15638	1	14582	14582		37.974	3.5723	1	293320			60188	12936	34574	34575	73440	73440					-0.052942844848075765
YTFTSYGISW	10	Unmodified	_YTFTSYGISW_					0	0	0		nc|ENSG00000211945|A0A0C4DH31|IGHV1-18	nc|ENSG00000211945|A0A0C4DH31|IGHV1-18	nc|ENSG00000211945|A0A0C4DH31|IGHV1-18	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	612.782222	1223.54989	-0.10072	-6.1717E-05	3.2844	0.0020126	3.1837	0.0019509	612.78471792184	59.704	0.44079	59.799	59.578	60.019	0.095093	-0.048713	-0.00012423	NaN	37.974	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283580			60189	12936	34574	34575							-0.052942844848075765
YTFTSYGISW	10	Unmodified	_YTFTSYGISW_					0	0	0		nc|ENSG00000211945|A0A0C4DH31|IGHV1-18	nc|ENSG00000211945|A0A0C4DH31|IGHV1-18	nc|ENSG00000211945|A0A0C4DH31|IGHV1-18	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	612.782222	1223.54989	0.209	0.00012807	3.3527	0.0020545	3.5617	0.0021826	612.7848094315332	59.871	0.43327	59.86	59.593	60.026	-0.011486	0.011755	-4.054E-05	NaN	37.974	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367940			60190	12936	34574	34575							-0.052942844848075765
YTGADELTIS	10	Unmodified	_YTGADELTIS_					0	0	0			REV__ENST00000340424.4_1_20:1651794-1678423:-|nuORF	REV__ENST00000340424.4_1_20:1651794-1678423:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.7721557617188	2	535.256037	1068.49752	0.47822	0.00025597	-0.14692	-7.8638E-05	0.33131	0.00017733	535.2557160527441	43.304	0.78365	43.388	43.007	43.791	0.083996					40	28	2	0	0	0	0.31039	1	9407	9407		18.146	2.2992	1	183360	+		60191	20106	34575	34576	73441	73441					-0.03398867618420809
YTGFSILV	8	Unmodified	_YTGFSILV_					0	0	0		nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74;ENST00000517791.1_1_5:149786694-149792396:-|nuORF;ENST00000523836.5_1_5:149785806-149792312:-|nuORF;nc|ENSG00000019582|P04233-3|CD74;ENST00000522153.1_1_5:149786338-149792312:-|nuORF	nc|ENSG00000019582|P04233-5|CD74	nc|ENSG00000019582|P04233-5|CD74	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.24713134765625	2	450.247286	898.48002	0.6448	0.00029032	-0.23183	-0.00010438	0.41297	0.00018594	450.24703690324657	78.138	0.84715	78.138	77.878	78.725	0					54	31	3	0	0	0	0.072895	2	20204	20204;20264		67.344	20.423	1	474370			60192	502	34576	34577	73442;73443	73442					0.02671881637252227
YTGFSILV	8	Unmodified	_YTGFSILV_					0	0	0		nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74;ENST00000517791.1_1_5:149786694-149792396:-|nuORF;ENST00000523836.5_1_5:149785806-149792312:-|nuORF;nc|ENSG00000019582|P04233-3|CD74;ENST00000522153.1_1_5:149786338-149792312:-|nuORF	nc|ENSG00000019582|P04233-5|CD74	nc|ENSG00000019582|P04233-5|CD74	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	450.2472229003906	2	450.247286	898.48002	0.49424	0.00022253	-0.18315	-8.2461E-05	0.31109	0.00014007	450.2469796515683	78.047	0.70741	78.105	77.898	78.605	0.058151					47	25	3	0	0	0	0.30517	1	20211	20211		30.225	0	1	362540			60193	502	34576	34577	73444	73444					0.02671881637252227
YTGFSILV	8	Unmodified	_YTGFSILV_					0	0	0		nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74;ENST00000517791.1_1_5:149786694-149792396:-|nuORF;ENST00000523836.5_1_5:149785806-149792312:-|nuORF;nc|ENSG00000019582|P04233-3|CD74;ENST00000522153.1_1_5:149786338-149792312:-|nuORF	nc|ENSG00000019582|P04233-5|CD74	nc|ENSG00000019582|P04233-5|CD74	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	450.24725341796875	2	450.247286	898.48002	0.74155	0.00033388	-0.51702	-0.00023279	0.22452	0.00010109	450.24700918754024	78.195	0.90169	78.165	77.87	78.772	-0.030426					51	33	2	0	0	0	0.15515	1	20231	20231		50.855	6.448	1	456360			60194	502	34576	34577	73445	73445					0.02671881637252227
YTGNYQIQF	9	Unmodified	_YTGNYQIQF_					0	0	0			REV__ENSG00000165379|ENST00000298119|LRFN5	REV__ENSG00000165379|ENST00000298119|LRFN5	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.279541015625	2	567.266739	1132.51892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.07	1	68.07	67.57	68.57	0								0	0	0	0.20238	1	17127	17127		21.747	2.4897	1		+		60195	17232	34577	34578	73446	73446					-0.042034377990376015
YTGNYQIQF	9	Unmodified	_YTGNYQIQF_					0	0	0			REV__ENSG00000165379|ENST00000298119|LRFN5	REV__ENSG00000165379|ENST00000298119|LRFN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.329833984375	2	567.266739	1132.51892	0.4744	0.00026911	-3.2947	-0.001869	-2.8203	-0.0015999	567.265054731123	85.101	0.14959	85.088	85.017	85.167	-0.01284					6	5	2	0	0	0	0.2451	1	22318	22318		15.847	3.3156	1	63880	+		60196	17232	34577	34578	73447	73447					-0.042034377990376015
YTGNYQIQF	9	Unmodified	_YTGNYQIQF_					0	0	0			REV__ENSG00000165379|ENST00000298119|LRFN5	REV__ENSG00000165379|ENST00000298119|LRFN5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.329833984375	2	567.266739	1132.51892	0.46518	0.00026388	-3.1852	-0.0018069	-2.72	-0.001543	567.2647363825532	83.847	0.27052	83.83	83.626	83.896	-0.016823					14	12	2	0	0	0	0.2451	1	21903	21903		10.824	4.6181	1	85131	+		60197	17232	34577	34578	73448	73448					-0.042034377990376015
YTGYILEKF	9	Unmodified	_YTGYILEKF_					0	0	0		ENST00000359513.8_1_11:46671851-46677808:+|nuORF	ENST00000359513.8_1_11:46671851-46677808:+|nuORF	ENST00000359513.8_1_11:46671851-46677808:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2791748046875	2	567.297507	1132.58046	0.26896	0.00015258	0.092469	5.2457E-05	0.36143	0.00020504	567.2975406908457	73.109	1.1823	73.109	72.613	73.795	0					129	40	5	0	0	0	0.12846	1	18868	18868		34.102	19.264	1	7365400			60198	9666	34578	34579	73449	73449					0.019474939002293468
YTGYILEKF	9	Unmodified	_YTGYILEKF_					0	0	0		ENST00000359513.8_1_11:46671851-46677808:+|nuORF	ENST00000359513.8_1_11:46671851-46677808:+|nuORF	ENST00000359513.8_1_11:46671851-46677808:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2783203125	2	567.297507	1132.58046	0.3419	0.00019396	-2.0187	-0.0011452	-1.6768	-0.00095125	567.7979032707514	74.406	0.43538	74.459	74.296	74.732	0.052361					22	14	2	0	0	0	0.17787	1	19108	19108		26.884	1.4843	1	325860			60199	9666	34578	34579	73450	73450					0.019474939002293468
YTGYILEKF	9	Unmodified	_YTGYILEKF_					0	0	0		ENST00000359513.8_1_11:46671851-46677808:+|nuORF	ENST00000359513.8_1_11:46671851-46677808:+|nuORF	ENST00000359513.8_1_11:46671851-46677808:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.279052734375	2	567.297507	1132.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.766	1	73.818	73.318	74.318	0.052361								0	0	0	0.18374	1	18862	18862		26.884	6.0124	1				60200	9666	34578	34579	73451	73451					0.019474939002293468
YTGYILEKF	9	Unmodified	_YTGYILEKF_					0	0	0		ENST00000359513.8_1_11:46671851-46677808:+|nuORF	ENST00000359513.8_1_11:46671851-46677808:+|nuORF	ENST00000359513.8_1_11:46671851-46677808:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.279541015625	2	567.297507	1132.58046	0.35355	0.00020057	0.0013605	7.718E-07	0.35491	0.00020134	567.2974641116053	73.138	1.1712	73.109	72.657	73.829	-0.029305					137	42	5	0	0	0	0.17787	1	18551	18551		26.884	4.1474	1	7296400			60201	9666	34578	34579	73452	73452					0.019474939002293468
YTHCLQYTL	9	Unmodified	_YTHCLQYTL_					0	0	0			REV__ENST00000471099.1_1_1:36520615-36520747:+|nuORF	REV__ENST00000471099.1_1_1:36520615-36520747:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.34375	2	571.270967	1140.52738	0.26568	0.00015178	1.2391	0.00070786	1.5048	0.00085963	571.2721266511895	90.912	0.39297	90.912	90.567	90.96	0					44	32	2	0	0	0	0.25706	1	24023	24023		6.7232	2.3939	1	173110	+		60202	14086	34579	34580	73453	73453					-0.03726207154068106
YTHCLQYTL	9	Unmodified	_YTHCLQYTL_					0	0	0			REV__ENST00000471099.1_1_1:36520615-36520747:+|nuORF	REV__ENST00000471099.1_1_1:36520615-36520747:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	571.270967	1140.52738	0.38578	0.00022038	0.77507	0.00044278	1.1609	0.00066316	571.2719390187121	90.792	0.75793	90.792	90.157	90.915	0.00039673	-0.060181	-0.00026987	NaN	6.7232	69	55	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119600	+		60203	14086	34579	34580							-0.03726207154068106
YTHFIQSF	8	Unmodified	_YTHFIQSF_					0	0	0		nc|ENSG00000148288|Q8N5D6-3|GBGT1;ENSG00000148288|ENST00000372040|GBGT1	nc|ENSG00000148288|Q8N5D6-3|GBGT1	nc|ENSG00000148288|Q8N5D6-3|GBGT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.2460327148438	2	521.753267	1041.49198	0.3461	0.00018058	-1.0951	-0.00057139	-0.74904	-0.00039081	522.2554446133797	67.134	0.50128	67.212	66.986	67.488	0.078041					35	17	3	0	0	0	0.42446	1	16780	16780		14.582	0	1	153810			60204	4799	34580	34581	73454	73454					-0.027105016195719145
YTHKRYVM	8	Unmodified	_YTHKRYVM_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	550.2951049804688	2	549.281669	1096.54878	0.32802	0.00018017	-0.88361	-0.00048535	-0.55559	-0.00030518	549.2810272910681	61.118	0.76653	61.118	60.936	61.703	0					62	28	3	0	0	0	0.39956	1	15074	15074		19.439	3.5918	1	2976100	+		60205	15391	34581	34582	73455	73455					0.004372226653003963
YTHLHMSL	8	Unmodified	_YTHLHMSL_					0	0	0		Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|230|3|anti-sense	Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|230|3|anti-sense	Harlequin-int_dup17|chr1:46326040-46329561:-|10.003084288088008|0.3399966488246573|4.88|534.0|230|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.3105773925781	2	501.247295	1000.48004	0.36213	0.00018152	1.1382	0.00057051	1.5003	0.00075203	501.247679574293	67.691	0.43144	67.691	67.479	67.911	0					25	14	3	0	0	0	0.3366	1	17072	17072		18.135	4.6271	1	186550			60206	12363	34582	34583	73456	73456					-0.020184416344250167
YTHLLTGFPK	10	Unmodified	_YTHLLTGFPK_					0	0	0			REV__ENST00000457761.6_1_2:172821936-172844354:+|nuORF	REV__ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.825439453125	2	588.824224	1175.63389	0.58919	0.00034693	0.19456	0.00011456	0.78375	0.00046149	588.8242006322487	20.781	0.64387	20.728	20.418	21.062	-0.052912					41	22	2	0	0	0	0.41085	1	2590	2590		1.4819	0.28856	1	124760	+		60207	15385	34583	34584	73457	73457					0.0531029140274768
YTHMFQLGF	9	Unmodified	_YTHMFQLGF_					0	0	0			REV__ENSG00000122477|ENST00000370137|LRRC39	REV__ENSG00000122477|ENST00000370137|LRRC39	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2881469726562	2	572.268227	1142.5219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.623	1	44.698	44.198	45.198	0.075047								0	0	0	0.21009	1	9896	9896		19.257	3.4098	1		+		60208	15157	34584	34585	73458	73458					-0.043658859458901134
YTHTQMNPY	9	Unmodified	_YTHTQMNPY_					0	0	0		ENST00000438101.1_1_X:49431298-49432372:-|nuORF	ENST00000438101.1_1_X:49431298-49432372:-|nuORF	ENST00000438101.1_1_X:49431298-49432372:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	578.3240356445312	2	577.750398	1153.48624	0.41593	0.0002403	0.4198	0.00024254	0.83572	0.00048284	577.750805994262	31.781	0.80789	31.824	31.6	32.408	0.042364					43	28	3	0	0	0	0.25066	1	5999	5999		11.64	0	1	447430			60209	10536	34585	34586	73459	73459					-0.08435968193543886
YTIGPPFLF	9	Unmodified	_YTIGPPFLF_					0	0	0			REV__nc|ENSG00000110693|P35712-4|SOX6	REV__nc|ENSG00000110693|P35712-4|SOX6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.261474609375	2	527.784036	1053.55352	0.55554	0.0002932	-0.54227	-0.0002862	0.013265	7.001E-06	527.7838621836676	63.311	0.21811	63.311	63.225	63.443	0					10	7	2	0	0	0	0.23783	1	15683	15683		18.135	2.2878	1	163280	+		60210	14678	34586	34587	73460	73460					0.028884300797017204
YTIIIHTLIQ	10	Unmodified	_YTIIIHTLIQ_					0	0	0		nc|ENSG00000173585|P51686-2|CCR9;ENSG00000173585|ENST00000357632|CCR9	nc|ENSG00000173585|P51686-2|CCR9	nc|ENSG00000173585|P51686-2|CCR9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	607.3135986328125	2	607.860806	1213.70706	0.31312	0.00019034	0.018122	1.1016E-05	0.33125	0.00020135	607.8606228893408	59.282	0.65154	59.282	59.024	59.675	0					52	22	3	0	0	0	0.32009	1	14515	14515		3.9444	0	1	566790			60211	6732	34587	34588	73461	73461					0.10875420125375967
YTIIIHTLIQ	10	Unmodified	_YTIIIHTLIQ_					0	0	0		nc|ENSG00000173585|P51686-2|CCR9;ENSG00000173585|ENST00000357632|CCR9	nc|ENSG00000173585|P51686-2|CCR9	nc|ENSG00000173585|P51686-2|CCR9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	607.3137817382812	2	607.860806	1213.70706	0.4204	0.00025554	0.0008631	5.2465E-07	0.42126	0.00025607	607.8606955140559	59.165	0.55931	59.256	59.015	59.574	0.091301					47	19	3	0	0	0	0.31847	1	14461	14461		6.7232	0	1	542500			60212	6732	34587	34588	73462	73462					0.10875420125375967
YTIKRYGK	8	Unmodified	_YTIKRYGK_					0	0	0			REV__ENSG00000132915|ENST00000255266|PDE6A	REV__ENSG00000132915|ENST00000255266|PDE6A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.2847900390625	2	514.798009	1027.58147	0.79601	0.00040979	-0.29827	-0.00015355	0.49775	0.00025624	515.3000548981308	56.252	0.36827	56.331	56.117	56.485	0.078674					21	13	3	0	0	0	0.41097	1	13505	13505		18.135	0	1	438520	+		60213	15595	34588	34589	73463	73463					0.06877753059779934
YTIRYKQVRGS	11	Unmodified	_YTIRYKQVRGS_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	457.608154296875	3	457.589487	1369.74663	0.24249	0.00011096	-3.4587	-0.0015827	-3.2162	-0.0014717	457.58802702382206	88.957	0.36453	88.956	88.611	88.976	-0.00080872					17	13	2	0	0	0	0.3287	1	23452	23452		12.228	4.2822	1	184600	+		60214	14737	34589	34590	73464	73464					0.07654940128782073
YTISCHLHL	9	Unmodified	_YTISCHLHL_					0	0	0			REV__ENST00000602661.5_1_9:108363519-108366511:+|nuORF	REV__ENST00000602661.5_1_9:108363519-108366511:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.314697265625	2	543.773677	1085.5328	0.14849	8.0744E-05	-1.5112	-0.00082177	-1.3627	-0.00074102	543.7726701620415	12.231	0.11259	12.163	12.083	12.196	-0.06806					6	4	2	0	0	0	0.26145	1	73	73		2.0598	0.21551	1	6433.4	+		60215	22642	34590	34591	73465	73465					-0.006544835716113084
YTIVTVLLLM	10	Unmodified	_YTIVTVLLLM_					0	0	0		CNIH4|p.H55Y|1|0.07|ENSG00000143771|chr1:224365903-224365903|C/T|missense_variant	CNIH4|p.H55Y|1|0.07|ENSG00000143771|chr1:224365903-224365903|C/T|missense_variant	CNIH4|p.H55Y|1|0.07|ENSG00000143771|chr1:224365903-224365903|C/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.8186645507812	2	583.348686	1164.68282	0.3427	0.00019991	-0.2243	-0.00013085	0.1184	6.9066E-05	583.3484439757667	90.576	0.79496	90.576	90.083	90.878	0					77	64	2	0	0	0	0.318	1	24063	24063		7.2892	5.2295	1	166110			60216	187	34591	34592	73466	73466					0.10706443647495689
YTIVTVLLLM	10	Unmodified	_YTIVTVLLLM_					0	0	0		CNIH4|p.H55Y|1|0.07|ENSG00000143771|chr1:224365903-224365903|C/T|missense_variant	CNIH4|p.H55Y|1|0.07|ENSG00000143771|chr1:224365903-224365903|C/T|missense_variant	CNIH4|p.H55Y|1|0.07|ENSG00000143771|chr1:224365903-224365903|C/T|missense_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	582.818603515625	2	583.348686	1164.68282	0.32063	0.00018704	-0.32179	-0.00018772	-0.001158	-6.7549E-07	583.348253977289	90.238	0.7955	90.329	90.084	90.879	0.090668					78	61	2	0	0	0	0.31482	1	23922	23922		11.64	9.5805	1	125510			60217	187	34591	34592	73467	73467					0.10706443647495689
YTIYFWTDM	9	Unmodified	_YTIYFWTDM_					0	0	0			REV__SPIN4|p.L167Pfs*2|1|0.05|ENSG00000186767|chrX:63350319-63350320|CA/-|frameshift_variant	REV__SPIN4|p.L167Pfs*2|1|0.05|ENSG00000186767|chrX:63350319-63350320|CA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.2562255859375	2	620.273175	1238.5318	0.1687	0.00010464	-0.78711	-0.00048822	-0.6184	-0.00038358	620.2725604904882	59.251	0.50554	59.251	59.055	59.56	0					29	17	3	0	0	0	0.25066	1	14380	14380		11.64	0.81637	1	254730	+		60218	18467	34592	34593	73468	73468					-0.07792742731180624
YTIYFWTDM	9	Unmodified	_YTIYFWTDM_					0	0	0			REV__SPIN4|p.L167Pfs*2|1|0.05|ENSG00000186767|chrX:63350319-63350320|CA/-|frameshift_variant	REV__SPIN4|p.L167Pfs*2|1|0.05|ENSG00000186767|chrX:63350319-63350320|CA/-|frameshift_variant	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	620.273175	1238.5318	0.3311	0.00020537	-1.3521	-0.00083865	-1.021	-0.00063328	620.2721289821891	59.276	0.39115	59.262	59.005	59.396	-0.014267	0.037864	-0.00051086	NaN	11.64	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134880	+		60219	18467	34592	34593							-0.07792742731180624
YTKDGTPIF	9	Unmodified	_YTKDGTPIF_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.28466796875	2	521.266207	1040.51786	0.87007	0.00045354	0.15073	7.8569E-05	1.0208	0.00053211	521.768053702104	77.898	0.61662	77.898	77.632	78.249	0					33	22	2	0	0	0	0.1854	1	20072	20072		25.399	0	1	96568			60220	6500	34593	34594	73469	73469					-0.0007765216794268781
YTKFIPPN	8	Unmodified	_YTKFIPPN_					0	0	0		nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1	nc|ENSG00000164951|Q9P0J1-2|PDP1	nc|ENSG00000164951|Q9P0J1-2|PDP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	490.2681579589844	2	490.26601	978.517468	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.419	1	74.472	73.972	74.972	0.052361								0	0	0	0.31323	1	19062	19062		26.884	13.376	1				60221	5907	34594	34595	73470	73470					0.027349729028514957
YTKFIPPN	8	Unmodified	_YTKFIPPN_					0	0	0		nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1	nc|ENSG00000164951|Q9P0J1-2|PDP1	nc|ENSG00000164951|Q9P0J1-2|PDP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	490.2686767578125	2	490.26601	978.517468	0.5678	0.00027837	4.2887	0.0021026	4.8565	0.002381	490.2679895845856	74.622	0.58818	74.591	74.444	75.032	-0.030655					31	20	2	0	0	0	0.43043	1	19144	19144		12.532	0.89125	1	365660			60222	5907	34594	34595	73471	73471					0.027349729028514957
YTKICETVFLS	11	Unmodified	_YTKICETVFLS_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-6|DOCK9	REV__nc|ENSG00000088387|Q9BZ29-6|DOCK9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	434.88226318359375	3	435.224935	1302.65297	-0.31163	-0.00013563	-0.70774	-0.00030802	-1.0194	-0.00044365	435.2253039981327	23.016	0.68727	23.016	22.649	23.336	0					45	23	3	0	0	0	0.3325	1	3390	3390		4.1166	0	1	82707	+		60223	14008	34595	34596	73472	73472					0.013754599115145538
YTKICETVFLS	11	Unmodified	_YTKICETVFLS_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-6|DOCK9	REV__nc|ENSG00000088387|Q9BZ29-6|DOCK9	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	435.224935	1302.65297	-0.20945	-9.1157E-05	-0.37736	-0.00016424	-0.58681	-0.00025539	435.225514264751	23.093	0.58726	23.005	22.711	23.298	-0.087608	-0.030053	0.00059279	NaN	4.1166	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88847	+		60224	14008	34595	34596							0.013754599115145538
YTKKRGQRP	9	Unmodified	_YTKKRGQRP_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3305053710938	2	567.330539	1132.64652	0.24926	0.00014142	-0.41895	-0.00023768	-0.16969	-9.6268E-05	567.3301009501672	80.463	2.8102	80.463	78.645	81.455	0					407	117	5	0	0	0	0.26612	2	21061	20554;21061		13.906	7.2892	1	5542900			60225	2198	34596	34597	73473;73474	73474					0.0855074758567298
YTKKRGQRP	9	Unmodified	_YTKKRGQRP_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3317260742188	2	567.330539	1132.64652	0.26897	0.0001526	-0.44866	-0.00025454	-0.17969	-0.00010194	567.3300574984545	80.382	2.87	80.447	78.587	81.457	0.065102					380	122	5	0	0	0	0.31038	1	20933	20933		7.2892	0.56607	1	6235000			60226	2198	34596	34597	73475	73475					0.0855074758567298
YTKKRGQRP	9	Unmodified	_YTKKRGQRP_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3303833007812	2	567.330539	1132.64652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.8	1	116.78	116.28	117.28	-0.022781								0	0	0	0.26334	1	30251	30251		2.0598	0.21551	1				60227	2198	34596	34597	73476	73476					0.0855074758567298
YTKKRGQRP	9	Unmodified	_YTKKRGQRP_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3300170898438	2	567.330539	1132.64652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.94	1	116.92	116.42	117.42	-0.022781								0	0	0	0.26334	1	30283	30283		2.0598	0.21551	1				60228	2198	34596	34597	73477	73477					0.0855074758567298
YTKKRGQRP	9	Unmodified	_YTKKRGQRP_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3297119140625	2	567.330539	1132.64652	0.28491	0.00016164	-0.80265	-0.00045537	-0.51773	-0.00029372	567.3299030070093	80.442	2.8672	80.416	78.604	81.472	-0.026825					370	113	5	0	0	0	0.31038	1	20668	20668		7.2892	7.2892	1	5958500			60229	2198	34596	34597	73478	73478					0.0855074758567298
YTKKRGQRP	9	Unmodified	_YTKKRGQRP_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.330078125	2	567.330539	1132.64652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.16	1	118.18	117.68	118.68	0.023476								0	0	0	0.26334	1	30604	30604		2.0598	0.40713	1				60230	2198	34596	34597	73479	73479					0.0855074758567298
YTKLWTPLL	9	Unmodified	_YTKLWTPLL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;ENST00000469700.1_1_20:47707305-47712721:+|nuORF	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2794799804688	2	567.831517	1133.64848	-0.14793	-8.3997E-05	1.6323	0.00092687	1.4844	0.00084288	567.8323950752427	113.91	0.18304	113.91	113.79	113.97	0					28	20	2	0	0	0	0.26145	1	29553	29553		2.0598	0	1	29977			60231	3141	34597	34598	73480	73480					0.08700363550906332
YTKLWTPLL	9	Unmodified	_YTKLWTPLL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;ENST00000469700.1_1_20:47707305-47712721:+|nuORF	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2784423828125	2	567.831517	1133.64848	-0.14803	-8.4054E-05	1.5987	0.00090782	1.4507	0.00082376	567.8322820107142	113.3	0.2188	113.3	113.17	113.39	0					36	27	2	0	0	0	0.26145	1	29426	29426		2.0598	0	1	35458			60232	3141	34597	34598	73481	73481					0.08700363550906332
YTKPKIEI	8	Unmodified	_YTKPKIEI_					0	0	0			REV__L1PA11_dup3980|chr21:5561002-5564111:-|1.0845136525595764|0.1273465350769654|3.09|530.0|84|3|sense	REV__L1PA11_dup3980|chr21:5561002-5564111:-|1.0845136525595764|0.1273465350769654|3.09|530.0|84|3|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	496.7237243652344	2	496.294768	990.574983	0.7637	0.00037902	-1.5774	-0.00078287	-0.81373	-0.00040385	496.2940546903858	77.906	0.48142	77.962	77.71	78.191	0.055412					24	17	3	0	0	0	0.34247	1	20079	20079		4.756	0	1	77269	+		60233	22805	34598	34599	73482	73482					0.0793181510841805
YTKPKSKPKS	10	Unmodified	_YTKPKSKPKS_					0	0	0		Harlequin-int_dup68|chr1:206053001-206053902:+|4.829576727494633|0.4316687424735471|3.48|537.0|42|2|anti-sense;Harlequin-int_dup157|chr4:69051711-69052349:+|2.115615803116056|0.0619131635885363|5.09|529.0|39|3|anti-sense	Harlequin-int_dup68|chr1:206053001-206053902:+|4.829576727494633|0.4316687424735471|3.48|537.0|42|2|anti-sense	Harlequin-int_dup68|chr1:206053001-206053902:+|4.829576727494633|0.4316687424735471|3.48|537.0|42|2|anti-sense	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.3536987304688	2	582.342781	1162.67101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.79	1	94.788	94.288	95.288	-0.0020142								0	0	0	0.37807	1	25299	25299		2.9952	0	1				60234	12393	34599	34600	73483	73483					0.0961796294850501
YTKQDVII	8	Unmodified	_YTKQDVII_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.92071533203125	2	490.276575	978.538597	0.31661	0.00015523	-0.79731	-0.0003909	-0.4807	-0.00023567	490.2759701263969	92.217	0.49219	92.306	92.069	92.561	0.089203					61	34	2	0	0	0	0.34198	1	24472	24472		10.824	0	1	173160			60235	560	34600	34601	73484	73484					0.04846938211710494
YTKQDVII	8	Unmodified	_YTKQDVII_					0	0	0		nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	nc|ENSG00000033178|A0AVT1-2|UBA6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	490.276575	978.538597	0.27237	0.00013354	-0.93919	-0.00046046	-0.66682	-0.00032693	490.27581720998535	92.238	0.60331	92.238	92.038	92.641	0	-0.033896	-8.7933E-05	NaN	10.824	75	46	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106920			60236	560	34600	34601							0.04846938211710494
YTKRKNTLV	9	Unmodified	_YTKRKNTLV_					0	0	0			REV__ENSG00000104427|ENST00000263849|ZC2HC1A	REV__ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	562.274658203125	2	561.835123	1121.65569	0.43796	0.00024606	0.077152	4.3347E-05	0.51511	0.00028941	561.83519223537	40.577	0.97141	40.577	40.334	41.305	0					78	35	3	0	0	0	0.24311	1	8874	8874		16.942	6.8684	1	1354900	+		60237	14409	34601	34602	73485	73485					0.09973096151315985
YTKRKNTLV	9	Unmodified	_YTKRKNTLV_					0	0	0			REV__ENSG00000104427|ENST00000263849|ZC2HC1A	REV__ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.274658203125	2	561.835123	1121.65569	0.53127	0.00029849	-0.12587	-7.0719E-05	0.4054	0.00022777	561.8351738231956	40.441	0.90619	40.534	40.284	41.19	0.09267					67	33	3	0	0	0	0.24311	1	8788	8788		16.942	2.104	1	1252200	+		60238	14409	34601	34602	73486	73486					0.09973096151315985
YTKRKNTLV	9	Unmodified	_YTKRKNTLV_					0	0	0			REV__ENSG00000104427|ENST00000263849|ZC2HC1A	REV__ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	562.2748413085938	2	561.835123	1121.65569	0.34705	0.00019498	0.30774	0.0001729	0.65479	0.00036788	561.8353650399305	40.437	0.92052	40.537	40.26	41.18	0.099407					71	33	3	0	0	0	0.24311	1	8757	8757		11.64	2.2572	1	1353200	+		60239	14409	34601	34602	73487	73487					0.09973096151315985
YTLDLKSFF	9	Unmodified	_YTLDLKSFF_					0	0	0			REV__ENSG00000176774|ENST00000325250|MAGEB18	REV__ENSG00000176774|ENST00000325250|MAGEB18	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.27880859375	2	567.297507	1132.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.15	1	113.15	112.65	113.65	0								0	0	0	0.25499	1	29395	29395		4.756	0	1		+		60240	17949	34602	34603	73488	73488					0.019474939002293468
YTLDLKSFF	9	Unmodified	_YTLDLKSFF_					0	0	0			REV__ENSG00000176774|ENST00000325250|MAGEB18	REV__ENSG00000176774|ENST00000325250|MAGEB18	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2791748046875	2	567.297507	1132.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.88	1	113.86	113.36	114.36	-0.019096								0	0	0	0.25499	1	29588	29588		4.756	0	1		+		60241	17949	34602	34603	73489	73489					0.019474939002293468
YTLDLKSFF	9	Unmodified	_YTLDLKSFF_					0	0	0			REV__ENSG00000176774|ENST00000325250|MAGEB18	REV__ENSG00000176774|ENST00000325250|MAGEB18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2791137695312	2	567.297507	1132.58046	0.43005	0.00024397	-1.773	-0.0010058	-1.3429	-0.00076183	567.296406690002	74.62	0.36874	74.589	74.358	74.726	-0.030655					17	12	2	0	0	0	0.17277	1	19091	19091		27.629	0.74515	1	268540	+		60242	17949	34602	34603	73490	73490					0.019474939002293468
YTLDLKSFF	9	Unmodified	_YTLDLKSFF_					0	0	0			REV__ENSG00000176774|ENST00000325250|MAGEB18	REV__ENSG00000176774|ENST00000325250|MAGEB18	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	567.297507	1132.58046	0.43005	0.00024397	-1.773	-0.0010058	-1.3429	-0.00076183	567.296406690002	74.62	0.36874	74.589	74.358	74.726	-0.030655	0.049341	0.00020451	NaN	27.629	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268540	+		60243	17949	34602	34603							0.019474939002293468
YTLDQTYAK	9	Unmodified	_YTLDQTYAK_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1;ENST00000441633.2_1_X:125606231-125606297:+|nuORF	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.773681640625	2	551.774396	1101.53424	-0.85346	-0.00047092	0.1227	6.7702E-05	-0.73076	-0.00040322	551.7743786843855	35.021	0.57898	35.021	34.775	35.354	0					61	20	4	0	0	0	0.0047555	2	6959	6959;7004		88.364	64.343	1	875280			60244	8130	34603	34604	73491;73492	73491					-0.012465710018659593
YTLDQTYAK	9	Unmodified	_YTLDQTYAK_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1;ENST00000441633.2_1_X:125606231-125606297:+|nuORF	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7737426757812	2	551.774396	1101.53424	-0.8267	-0.00045615	0.35069	0.0001935	-0.47601	-0.00026265	551.7745742699811	34.981	0.64144	35.057	34.788	35.429	0.075306					62	22	4	0	0	0	0.00010651	3	6944	6913;6944;6994		139.78	109.15	1	918920			60245	8130	34603	34604	73493;73494;73495	73494					-0.012465710018659593
YTLDQTYAK	9	Unmodified	_YTLDQTYAK_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1;ENST00000441633.2_1_X:125606231-125606297:+|nuORF	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.7741088867188	2	551.774396	1101.53424	-0.65384	-0.00036077	0.084013	4.6356E-05	-0.56983	-0.00031442	551.774436453206	34.962	0.61016	35.039	34.78	35.39	0.077377					59	21	4	0	0	0	0.00010651	2	6922	6922;6975		139.78	109.15	1	919140			60246	8130	34603	34604	73496;73497	73496					-0.012465710018659593
YTLDQYELK	9	Unmodified	_YTLDQYELK_					0	0	0			REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408|CSMD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.275146484375	2	586.795329	1171.5761	0.55189	0.00032385	-1.736	-0.0010187	-1.1841	-0.00069482	586.7942546756082	52.998	0.79411	53.054	52.637	53.431	0.056259					67	28	4	0	0	0	0.20167	1	12518	12518		29.082	6.3453	1	510720	+		60247	22973	34604	34605	73498	73498					-0.0028201531333706953
YTLEKEEEE	9	Unmodified	_YTLEKEEEE_					0	0	0		nc|ENSG00000022556|Q9NX02-3|NLRP2;ENST00000540597.5_1_19:55476735-55501561:+|nuORF;nc|ENSG00000022556|Q9NX02-4|NLRP2;nc|ENSG00000022556|Q9NX02-5|NLRP2;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2	nc|ENSG00000022556|Q9NX02-3|NLRP2	nc|ENSG00000022556|Q9NX02-3|NLRP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.2830200195312	2	585.264059	1168.51356	0.28845	0.00016882	-1.039	-0.00060808	-0.75053	-0.00043926	585.2637499817296	69.993	0.36637	69.993	69.843	70.209	0					18	13	2	0	0	0	0.23767	1	17742	17742		18.146	3.3081	1	145310			60248	515	34605	34606	73499	73499					-0.0639520617216931
YTLEKEEEE	9	Unmodified	_YTLEKEEEE_					0	0	0		nc|ENSG00000022556|Q9NX02-3|NLRP2;ENST00000540597.5_1_19:55476735-55501561:+|nuORF;nc|ENSG00000022556|Q9NX02-4|NLRP2;nc|ENSG00000022556|Q9NX02-5|NLRP2;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2	nc|ENSG00000022556|Q9NX02-3|NLRP2	nc|ENSG00000022556|Q9NX02-3|NLRP2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	585.264059	1168.51356	0.34954	0.00020457	-1.3714	-0.00080261	-1.0218	-0.00059803	585.2636115716692	70.056	0.31053	70.034	69.937	70.248	-0.022087	0.020544	-0.00021844	NaN	18.146	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107510			60249	515	34605	34606							-0.0639520617216931
YTLGLQYHY	9	Unmodified	_YTLGLQYHY_					0	0	0			REV__ENSG00000198677|ENST00000358746|SKIC3	REV__ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.806396484375	2	579.284931	1156.55531	0.37232	0.00021568	1.317	0.00076292	1.6893	0.00097861	579.2866205825829	37.925	0.70589	38.016	37.667	38.373	0.090885					53	25	3	0	0	0	0.11461	1	7764	7764		36.127	3.8215	1	217500	+		60250	18842	34606	34607	73500	73500					-0.016705609023574652
YTLGWSLWF	9	Unmodified	_YTLGWSLWF_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.2748413085938	2	586.792392	1171.57023	0.43788	0.00025694	2.6479	0.0015537	3.0857	0.0018107	586.7937945827936	53.338	0.81789	53.328	52.976	53.794	-0.0096092					59	30	3	0	0	0	0.1854	1	12575	12575		32.305	0	1	621510	+		60251	16655	34607	34608	73501	73501					-0.00869069034365566
YTLHNCRCL	9	Unmodified	_YTLHNCRCL_					0	0	0			REV__ENSG00000159618|ENST00000349457|ADGRG5	REV__ENSG00000159618|ENST00000349457|ADGRG5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.3032836914062	2	561.762786	1121.51102	0.41389	0.00023251	-0.44025	-0.00024732	-0.026363	-1.481E-05	561.7607832903551	65.681	0.4288	65.669	65.398	65.827	-0.011337					24	15	3	0	0	0	0.24311	1	16313	16313		16.942	0	1	108150	+		60252	16861	34608	34609	73502	73502					-0.044876115918214055
YTLIVLYHI	9	Unmodified	_YTLIVLYHI_					0	0	0		ENST00000314664.11_2_10:51840680-51843898:+|nuORF	ENST00000314664.11_2_10:51840680-51843898:+|nuORF	ENST00000314664.11_2_10:51840680-51843898:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.27783203125	2	567.831517	1133.64848	-0.14823	-8.4172E-05	1.755	0.00099653	1.6067	0.00091236	567.8322785177418	116.7	0.11853	116.7	116.64	116.75	0					19	14	2	0	0	0	0.25879	1	30187	30187		4.756	0.42677	1	21461			60253	9344	34609	34610	73503	73503					0.08700363550883594
YTLIVLYHI	9	Unmodified	_YTLIVLYHI_					0	0	0		ENST00000314664.11_2_10:51840680-51843898:+|nuORF	ENST00000314664.11_2_10:51840680-51843898:+|nuORF	ENST00000314664.11_2_10:51840680-51843898:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2775268554688	2	567.831517	1133.64848	-0.148	-8.4036E-05	1.948	0.0011061	1.8	0.0010221	567.8325017025484	114.17	0.33041	114.17	113.97	114.31	0					46	36	2	0	0	0	0.25879	1	29650	29650		4.756	0.42677	1	27185			60254	9344	34609	34610	73504	73504					0.08700363550883594
YTLIVLYHI	9	Unmodified	_YTLIVLYHI_					0	0	0		ENST00000314664.11_2_10:51840680-51843898:+|nuORF	ENST00000314664.11_2_10:51840680-51843898:+|nuORF	ENST00000314664.11_2_10:51840680-51843898:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.2780151367188	2	567.831517	1133.64848	0.15547	8.828E-05	1.377	0.00078189	1.5324	0.00087017	567.8323026372565	113.02	0.21861	113	112.87	113.09	-0.017303					37	26	2	0	0	0	0.25879	1	29361	29361		4.756	0.42677	1	29107			60255	9344	34609	34610	73505	73505					0.08700363550883594
YTLIVLYHI	9	Unmodified	_YTLIVLYHI_					0	0	0		ENST00000314664.11_2_10:51840680-51843898:+|nuORF	ENST00000314664.11_2_10:51840680-51843898:+|nuORF	ENST00000314664.11_2_10:51840680-51843898:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.2789916992188	2	567.831517	1133.64848	0.20448	0.00011611	1.3473	0.00076502	1.5517	0.00088113	567.8321456189988	113.13	0.21905	113.14	112.99	113.21	0.014824					34	27	2	0	0	0	0.25879	1	29416	29416		4.756	0.42677	1	33218			60256	9344	34609	34610	73506	73506					0.08700363550883594
YTLLMTPLF	9	Unmodified	_YTLLMTPLF_					0	0	0		ENST00000499346.6_1_5:127418445-127418481:-|nuORF	ENST00000499346.6_1_5:127418445-127418481:-|nuORF	ENST00000499346.6_1_5:127418445-127418481:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.26123046875	2	549.798829	1097.5831	0.21152	0.0001163	-2.6638	-0.0014645	-2.4523	-0.0013483	549.797001883634	75.501	0.48119	75.501	75.339	75.821	0					24	16	2	0	0	0	0.24311	1	19428	19428		7.2892	0.56607	1	97209			60257	11261	34610	34611	73507	73507					0.03821626033550274
YTLLVGKPPF	10	Unmodified	_YTLLVGKPPF_					0	0	0		ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENSG00000166851|ENST00000300093|PLK1	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2791748046875	2	567.831517	1133.64848	-0.14802	-8.4052E-05	1.3107	0.00074425	1.1627	0.0006602	567.8322387699843	119.54	0.2764	119.54	119.31	119.59	0					51	35	2	0	0	0	0.32009	1	30819	30819		3.9444	1.6417	1	21533			60258	6121	34611	34612	73508	73508					0.08700363550906332
YTLPRLNQE	9	Unmodified	_YTLPRLNQE_					0	0	0		L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense;nc|ENSG999|O00370|L1_ORF2;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|9|1|sense;L1PA3_dup6831|chrX:106827828-106830948:+|1.112501382732906|0.4076652707632567|1.45|539.0|68|3|sense;L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|40|1|sense;L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|42|1|sense;L1PA3_dup1464|chr2:208773458-208776294:+|1.730898577886428|0.207304446788351|3.06|523.0|1|1|sense;L1P2_dup354|chr3:177908608-177914071:+|1.579459827711941|0.1324791782257567|3.58|528.0|34|1|sense;L1PA3_dup8093|chr11:58696286-58700694:-|8.889446604907338|0.3518458624306171|4.66|529.0|7|1|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3312377929688	2	567.301113	1132.58767	0.23328	0.00013234	-1.5856	-0.00089953	-1.3524	-0.00076719	567.3000115523234	81.043	0.46043	81.043	80.77	81.23	0					30	22	2	0	0	0	0.24688	1	21019	21019		14.838	0	1	144670			60259	12439	34612	34613	73509	73509					0.026682265006456873
YTLPRLNQE	9	Unmodified	_YTLPRLNQE_					0	0	0		L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense;nc|ENSG999|O00370|L1_ORF2;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|9|1|sense;L1PA3_dup6831|chrX:106827828-106830948:+|1.112501382732906|0.4076652707632567|1.45|539.0|68|3|sense;L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|40|1|sense;L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|42|1|sense;L1PA3_dup1464|chr2:208773458-208776294:+|1.730898577886428|0.207304446788351|3.06|523.0|1|1|sense;L1P2_dup354|chr3:177908608-177914071:+|1.579459827711941|0.1324791782257567|3.58|528.0|34|1|sense;L1PA3_dup8093|chr11:58696286-58700694:-|8.889446604907338|0.3518458624306171|4.66|529.0|7|1|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.329833984375	2	567.301113	1132.58767	0.26354	0.0001495	-2.8944	-0.001642	-2.6309	-0.0014925	567.2996840056628	81.395	0.66615	81.371	81.019	81.685	-0.02404					44	29	2	0	0	0	0.24688	1	21275	21275		14.838	0	1	120350			60260	12439	34612	34613	73510	73510					0.026682265006456873
YTLPRLNQE	9	Unmodified	_YTLPRLNQE_					0	0	0		L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense;nc|ENSG999|O00370|L1_ORF2;L1HS_dup1616|chr22:28663284-28669315:+|1.1217790905042195|0.2468976263073953|2.18|496.0|9|1|sense;L1PA3_dup6831|chrX:106827828-106830948:+|1.112501382732906|0.4076652707632567|1.45|539.0|68|3|sense;L1PA4_dup1628|chr2:208784257-208790424:+|1.0623077957396911|0.1813551409053674|2.55|524.0|40|1|sense;L1PA4_dup9053|chr11:71723728-71729843:+|1.0580169052279165|0.2217380373234672|2.25|534.0|42|1|sense;L1PA3_dup1464|chr2:208773458-208776294:+|1.730898577886428|0.207304446788351|3.06|523.0|1|1|sense;L1P2_dup354|chr3:177908608-177914071:+|1.579459827711941|0.1324791782257567|3.58|528.0|34|1|sense;L1PA3_dup8093|chr11:58696286-58700694:-|8.889446604907338|0.3518458624306171|4.66|529.0|7|1|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	L1PA2_dup678|chr2:208811622-208817648:+|1.9073773458579988|0.2448110861201761|2.96|525.0|82|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3308715820312	2	567.301113	1132.58767	0.26242	0.00014887	0.92257	0.00052337	1.185	0.00067225	567.3012584220919	80.847	0.41933	80.821	80.597	81.017	-0.026825					20	16	2	0	0	0	0.24688	1	20962	20962		14.838	0	1	249350			60261	12439	34612	34613	73511	73511					0.026682265006456873
YTLSRVPLK	9	Unmodified	_YTLSRVPLK_					0	0	0			REV__ENST00000448009.1_1_10:65394289-65394328:-|nuORF	REV__ENST00000448009.1_1_10:65394289-65394328:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.829345703125	2	538.826766	1075.63898	0.7458	0.00040186	-0.45243	-0.00024378	0.29337	0.00015807	538.8265887780245	47.974	1.2022	48.018	47.637	48.839	0.04332					168	44	5	0	0	0	0.10197	1	10892	10892		37.974	19.839	1	13620000	+		60262	15558	34613	34614	73512	73512					0.1041859526535518
YTLTPSPLR	9	Unmodified	_YTLTPSPLR_					0	0	0		ENST00000564704.5_1_16:67272241-67289541:+|nuORF	ENST00000564704.5_1_16:67272241-67289541:+|nuORF	ENST00000564704.5_1_16:67272241-67289541:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.3373413085938	2	524.295299	1046.57605	0.4858	0.0002547	0.47775	0.00025048	0.96355	0.00050519	524.2957265346324	42.969	0.62703	42.969	42.706	43.333	0					45	22	3	0	0	0	0.24471	1	9483	9483		17.113	4.5813	1	624440			60263	11954	34614	34615	73513	73513					0.054620294773030764
YTLTWYRL	8	Unmodified	_YTLTWYRL_					0	0	0			REV__ENSG00000170835|ENST00000372080|CEL	REV__ENSG00000170835|ENST00000372080|CEL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	561.292724609375	2	558.297842	1114.58113	0.32783	0.00018303	0.87424	0.00048809	1.2021	0.00067111	558.2977197264045	68.154	1.2762	68.226	67.796	69.072	0.071938					188	46	7	0	0	0	0.4419	1	17151	17151		8.5933	0.68312	1	14782000	+		60264	17599	34615	34616	73514	73514					0.028423333399359763
YTLWIRSIF	9	Unmodified	_YTLWIRSIF_					0	0	0			REV__ENSG00000125703|ENST00000317868|ATG4C	REV__ENSG00000125703|ENST00000317868|ATG4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.3265380859375	2	599.834591	1197.65463	0.51017	0.00030602	0.032287	1.9367E-05	0.54246	0.00032538	599.8343445753662	70.78	0.35752	70.84	70.659	71.017	0.060783					16	12	2	0	0	0	0.24688	1	17919	17919		14.838	6.9281	1	238510	+		60265	15280	34616	34617	73515	73515					0.06370881782413562
YTMLLCCFVF	10	Unmodified	_YTMLLCCFVF_					0	0	0		ENSG00000122375|ENST00000241891|OPN4;nc|ENSG00000122375|Q9UHM6-2|OPN4	ENSG00000122375|ENST00000241891|OPN4	ENSG00000122375|ENST00000241891|OPN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.8585510253906	3	413.858541	1238.55379	0.14141	5.8522E-05	0.37508	0.00015523	0.51649	0.00021375	413.8586130806228	76.169	0.69655	76.223	75.944	76.64	0.053413					71	24	4	0	0	0	0.36698	2	19643	19593;19643		9.544	1.3884	1	1111100			60266	3039	34617	34618	73516;73517	73517					-0.055939775786100654
YTMLLCCFVF	10	Unmodified	_YTMLLCCFVF_					0	0	0		ENSG00000122375|ENST00000241891|OPN4;nc|ENSG00000122375|Q9UHM6-2|OPN4	ENSG00000122375|ENST00000241891|OPN4	ENSG00000122375|ENST00000241891|OPN4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	413.8584289550781	3	413.858541	1238.55379	0.28812	0.00011924	0.17136	7.0919E-05	0.45948	0.00019016	413.8585535067098	76.264	0.84113	76.233	75.962	76.804	-0.031479					70	30	3	0	0	0	0.36698	1	19656	19656		9.544	1.3884	1	1011200			60267	3039	34617	34618	73518	73518					-0.055939775786100654
YTNIYISIA	9	Unmodified	_YTNIYISIA_					0	0	0		ENSG00000177464|ENST00000323040|GPR4	ENSG00000177464|ENST00000323040|GPR4	ENSG00000177464|ENST00000323040|GPR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	528.8137817382812	2	529.281857	1056.54916	0.43551	0.00023051	-1.3063	-0.00069139	-0.87077	-0.00046088	529.281276073194	76.996	0.47513	77.051	76.758	77.233	0.05542					26	16	3	0	0	0	0.24289	1	19857	19857		18.146	2.2992	1	200610			60268	6988	34618	34619	73519	73519					0.02314920866160719
YTNYRLGMSAP	11	Unmodified	_YTNYRLGMSAP_					0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	425.2075500488281	3	424.872895	1271.59686	-0.16325	-6.9358E-05	-0.53176	-0.00022593	-0.695	-0.00029529	424.87243005348245	25.865	0.83749	25.843	25.635	26.472	-0.022236					52	29	3	0	0	0	0.46059	1	4219	4219		1.3296	0.25818	1	203090	+		60269	15710	34619	34620	73520	73520					-0.028077482053049607
YTPEAFNWR	9	Unmodified	_YTPEAFNWR_					0	0	0		nc|ENSG00000254986|Q9NY33-4|DPP3;ENSG00000254986|ENST00000531863|DPP3	nc|ENSG00000254986|Q9NY33-4|DPP3	nc|ENSG00000254986|Q9NY33-4|DPP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.2810668945312	2	592.28018	1182.54581	0.62582	0.00037066	-0.31773	-0.00018819	0.30809	0.00018247	592.2797516975796	53.594	0.98158	53.594	53.259	54.24	0					83	36	3	0	0	0	0.24467	1	12769	12769		17.113	0.96379	1	568820			60270	8614	34620	34621	73521	73521					-0.03816329187861811
YTPEGQNPSSA	11	Unmodified	_YTPEGQNPSSA_					0	0	0		ENST00000531791.1_1_11:65143880-65144565:-|nuORF;nc|ENSG00000162241|Q8N413-3|SLC25A45;nc|ENSG00000162241|Q8N413-2|SLC25A45;nc|ENSG00000162241|Q8N413-4|SLC25A45;ENSG00000162241|ENST00000398802|SLC25A45	ENST00000531791.1_1_11:65143880-65144565:-|nuORF	ENST00000531791.1_1_11:65143880-65144565:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.3697509765625	2	575.754192	1149.49383	0.32464	0.00018691	-2.0445	-0.0011771	-1.7199	-0.00099021	576.2544278016205	36.343	0.52519	36.343	36.065	36.59	0					40	18	3	0	0	0	0.3327	1	7329	7329		2.7352	0.67545	1	403900			60271	5555	34621	34622	73522	73522					-0.074935373922699
YTPEGQNPSSA	11	Unmodified	_YTPEGQNPSSA_					0	0	0		ENST00000531791.1_1_11:65143880-65144565:-|nuORF;nc|ENSG00000162241|Q8N413-3|SLC25A45;nc|ENSG00000162241|Q8N413-2|SLC25A45;nc|ENSG00000162241|Q8N413-4|SLC25A45;ENSG00000162241|ENST00000398802|SLC25A45	ENST00000531791.1_1_11:65143880-65144565:-|nuORF	ENST00000531791.1_1_11:65143880-65144565:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	576.3696899414062	2	575.754192	1149.49383	0.50526	0.0002909	-2.9039	-0.0016719	-2.3986	-0.001381	575.7526209552778	36.246	0.4995	36.328	36.062	36.561	0.082359					31	17	2	0	0	0	0.3327	1	7278	7278		2.7352	0.67545	1	561060			60272	5555	34621	34622	73523	73523					-0.074935373922699
YTPGEEVECL	10	Unmodified	_YTPGEEVECL_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	570.2508544921875	2	570.249897	1138.48524	0.51889	0.0002959	2.3038	0.0013137	2.8227	0.0016096	570.251400602085	36.221	1.1265	36.303	36.062	37.188	0.082359					94	40	4	0	0	0	0.3641	1	7387	7387		10.074	2.7847	1	1400900	+		60273	16784	34622	34623	73524	73524					-0.07846227353115864
YTPLHHQSF	9	Unmodified	_YTPLHHQSF_					0	0	0		ENSG00000008197|ENST00000008391|TFAP2D	ENSG00000008197|ENST00000008391|TFAP2D	ENSG00000008197|ENST00000008391|TFAP2D	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	565.2891235351562	2	565.274898	1128.53524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.25	1	51.296	50.796	51.796	0.046574								0	0	0	0.21726	1	11945	11945		16.942	2.104	1				60274	390	34623	34624	73525	73525					-0.023883118423100314
YTPLKRQKS	9	Unmodified	_YTPLKRQKS_					0	0	0			REV__ENST00000395957.6_3_8:101932523-101932712:-|nuORF	REV__ENST00000395957.6_3_8:101932523-101932712:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8038330078125	2	560.827298	1119.64004	0.23459	0.00013156	-0.67909	-0.00038085	-0.4445	-0.00024929	560.8270457233978	43.821	0.67519	43.821	43.414	44.09	0					39	24	2	0	0	0	0.24913	1	9649	9649		12.532	8.5872	1	510890	+		60275	20646	34624	34625	73526	73526					0.08500809634256257
YTPLNTVAP	9	Unmodified	_YTPLNTVAP_					0	0	0		ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	ENSG00000083093|ENST00000261584|PALB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	488.7414245605469	2	488.260925	974.507297	0.74364	0.00036309	-1.484	-0.00072456	-0.74033	-0.00036147	488.25999675904404	78.059	0.5393	78.059	77.85	78.389	0					25	19	2	0	0	0	0.24311	1	20160	20160		11.64	1.5664	1	95427			60276	1213	34625	34626	73527	73527					0.01902365177613774
YTPPIWSVT	9	Unmodified	_YTPPIWSVT_					0	0	0			REV__ENST00000556407.5_1_14:101246096-101295426:+|nuORF	REV__ENST00000556407.5_1_14:101246096-101295426:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.8172607421875	2	532.276575	1062.5386	0.56491	0.00030069	-0.5478	-0.00029158	0.017107	9.1057E-06	532.2759903165243	77.165	1.4375	77.22	76.922	78.359	0.055412					74	51	2	0	0	0	0.1939	1	19884	19884		18.146	5.9057	1	912420	+		60277	21157	34626	34627	73528	73528					0.009829382117231944
YTPPIWSVT	9	Unmodified	_YTPPIWSVT_					0	0	0			REV__ENST00000556407.5_1_14:101246096-101295426:+|nuORF	REV__ENST00000556407.5_1_14:101246096-101295426:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	531.8171997070312	2	532.276575	1062.5386	0.85907	0.00045726	-1.0055	-0.00053522	-0.14646	-7.796E-05	532.2758623330213	77.273	1.395	77.242	76.905	78.3	-0.031334					76	50	2	0	0	0	0.22061	1	19964	19964		24.021	9.1823	1	846100	+		60278	21157	34626	34627	73529	73529					0.009829382117231944
YTPPSPILN	9	Unmodified	_YTPPSPILN_					0	0	0			REV__nc|ENSG00000095303|P23219-4|PTGS1	REV__nc|ENSG00000095303|P23219-4|PTGS1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	501.2585144042969	2	501.26875	1000.52295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.289	1	80.289	79.789	80.789	0								0	0	0	0.2362	1	20860	20860		10.824	0	1		+		60279	14097	34627	34628	73530	73530					0.022706516946641386
YTPTPRFRL	9	Unmodified	_YTPTPRFRL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.27001953125	2	575.822015	1149.62948	0.46134	0.00026565	-0.5496	-0.00031647	-0.088262	-5.0823E-05	575.8216097628347	48.121	0.54169	48.121	47.987	48.528	0					29	18	2	0	0	0	0.25526	1	11075	11075		4.3292	0	1	314050			60280	1286	34628	34629	73531	73531					0.060648269798548426
YTPYGKAQI	9	Unmodified	_YTPYGKAQI_					0	0	0			REV__ENST00000484717.5_1_3:38035793-38043423:+|nuORF	REV__ENST00000484717.5_1_3:38035793-38043423:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2846069335938	2	520.7742	1039.53385	0.45293	0.00023588	-0.40709	-0.000212	0.045839	2.3872E-05	520.7738921432486	66.363	0.60365	66.447	66.164	66.767	0.083832					45	21	4	0	0	0	0.23784	1	16685	16685		19.257	2.1441	1	568050	+		60281	15787	34629	34630	73532	73532					0.01566054068939593
YTQALCGTYS	10	Unmodified	_YTQALCGTYS_					0	0	0			REV__ENSG00000165202|ENST00000297913|OR1Q1	REV__ENSG00000165202|ENST00000297913|OR1Q1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	554.2771606445312	2	553.744782	1105.47501	0.5835	0.00032311	1.545	0.00085555	2.1285	0.0011787	553.7455663386384	53.867	0.43811	53.867	53.698	54.136	0					21	15	2	0	0	0	0.31889	1	12734	12734		6.2058	0.47393	1	183110	+		60282	17218	34630	34631	73533	73533					-0.07350790287705422
YTQKSLSL	8	Unmodified	_YTQKSLSL_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	470.26055908203125	2	470.260925	938.507297	-0.41163	-0.00019357	0.28996	0.00013636	-0.12166	-5.7213E-05	470.2610879180642	35.359	0.40359	35.359	35.144	35.547	0					26	14	2	0	0	0	0.15072	1	7092	7092		51.63	11.672	1	281330			60283	12934	34631	34632	73534	73534					0.03558365177639189
YTQKSLSL	8	Unmodified	_YTQKSLSL_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	470.260925	938.507297	-0.30396	-0.00014294	0.29044	0.00013658	-0.013518	-6.3572E-06	470.2610667107761	35.327	0.4397	35.403	35.123	35.563	0.075306	0.042869	-0.00010752	NaN	51.63	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275880			60284	12934	34631	34632							0.03558365177639189
YTQKSLSL	8	Unmodified	_YTQKSLSL_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	470.260925	938.507297	-0.51177	-0.00024067	0.69888	0.00032866	0.18711	8.7992E-05	470.2612459500257	35.24	0.41183	35.318	35.116	35.528	0.077377	-0.041904	0.00027663	NaN	51.63	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292480			60285	12934	34631	34632							0.03558365177639189
YTQRCRLF	8	Unmodified	_YTQRCRLF_					0	0	0		PSPC1|p.Q178Vfs*13|1|0.05|ENSG00000121390|chr13:19772383-19772384|TG/-|frameshift_variant;nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390|ENST00000338910|PSPC1;nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	PSPC1|p.Q178Vfs*13|1|0.05|ENSG00000121390|chr13:19772383-19772384|TG/-|frameshift_variant;nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7593994140625	2	543.779293	1085.54403	0.78558	0.00042718	-2.7048	-0.0014708	-1.9192	-0.0010436	543.7781459615554	56.575	0.82359	56.654	56.437	57.261	0.078674					45	30	2	0	0	0	0.32778	1	13656	13656		14.582	1.0738	1	470640			60286	2996;2731	34632	34633	73535	73535					0.004683385225234815
YTQRCRLF	8	Unmodified	_YTQRCRLF_					0	0	0		PSPC1|p.Q178Vfs*13|1|0.05|ENSG00000121390|chr13:19772383-19772384|TG/-|frameshift_variant;nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390|ENST00000338910|PSPC1;nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	PSPC1|p.Q178Vfs*13|1|0.05|ENSG00000121390|chr13:19772383-19772384|TG/-|frameshift_variant;nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	543.779293	1085.54403	0.57942	0.00031508	-2.4723	-0.0013444	-1.8929	-0.0010293	543.7785423083095	56.636	0.96349	56.636	56.471	57.435	0	-0.10528	0.00019184	NaN	14.582	48	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	466950			60287	2996;2731	34632	34633							0.004683385225234815
YTQRCRLF	8	Unmodified	_YTQRCRLF_					0	0	0		PSPC1|p.Q178Vfs*13|1|0.05|ENSG00000121390|chr13:19772383-19772384|TG/-|frameshift_variant;nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390|ENST00000338910|PSPC1;nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	PSPC1|p.Q178Vfs*13|1|0.05|ENSG00000121390|chr13:19772383-19772384|TG/-|frameshift_variant;nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	543.779293	1085.54403	0.82184	0.0004469	-2.7856	-0.0015147	-1.9637	-0.0010678	543.778242583882	56.953	0.76907	56.934	56.672	57.441	-0.019077	0.1926	-0.00014884	NaN	14.582	39	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	430740			60288	2996;2731	34632	34633							0.004683385225234815
YTRIIITI	8	Unmodified	_YTRIIITI_					0	0	0		ENSG00000179919|ENST00000326258|OR10A7	ENSG00000179919|ENST00000326258|OR10A7	ENSG00000179919|ENST00000326258|OR10A7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.25408935546875	2	496.810585	991.606617	0.34261	0.00017021	0.018305	9.0939E-06	0.36091	0.0001793	496.81049501388634	28.771	0.37543	28.771	28.522	28.898	0					16	12	2	0	0	0	0.344	1	5020	5020		2.5775	0	1	38528			60289	7156	34633	34634	73536	73536					0.11047807862382797
YTRKNFPF	8	Unmodified	_YTRKNFPF_					0	0	0		nc|ENSG00000170054|Q86WD7-2|SERPINA9;nc|ENSG00000170054|Q86WD7-5|SERPINA9;nc|ENSG00000170054|Q86WD7-4|SERPINA9;nc|ENSG00000170054|Q86WD7-6|SERPINA9;ENSG00000170054|ENST00000674397|SERPINA9;nc|ENSG00000170054|Q86WD7-7|SERPINA9	nc|ENSG00000170054|Q86WD7-2|SERPINA9	nc|ENSG00000170054|Q86WD7-2|SERPINA9	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.3121337890625	2	536.782359	1071.55016	0.5577	0.00029936	1.8521	0.00099415	2.4098	0.0012935	536.7814852037409	88.474	0.24972	88.471	88.31	88.56	-0.0028381					18	12	2	0	0	0	0.34218	1	23311	23311		9.3474	0	1	79089			60290	12834	34634	34635	73537	73537					0.017251800257099603
YTRPDRPE	8	Unmodified	_YTRPDRPE_					0	0	0		ENSG00000118965|ENST00000281405|WDR35;nc|ENSG00000118965|Q9P2L0|WDR35	ENSG00000118965|ENST00000281405|WDR35	ENSG00000118965|ENST00000281405|WDR35	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.7582397460938	2	517.256705	1032.49886	0.62622	0.00032392	-1.6144	-0.00083507	-0.9882	-0.00051115	517.2555540729272	47.914	1.256	47.914	47.38	48.636	0					81	44	3	0	0	0	0.3671	1	10926	10926		23.148	0	1	3260800			60291	2853	34635	34636	73538	73538					-0.0160918873900755
YTRQRQLASL	10	Unmodified	_YTRQRQLASL_					0	0	0			REV__ENSG00000124302|ENST00000650847|CHST8	REV__ENSG00000124302|ENST00000650847|CHST8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	412.1806945800781	3	412.566683	1234.67822	-0.15064	-6.215E-05	-0.029422	-1.2138E-05	-0.18006	-7.4288E-05	412.56661588962453	27.241	1.353	27.241	26.41	27.763	0					118	46	4	0	0	0	0.31094	1	4560	4560		19.626	5.4078	1	608230	+		60292	15228	34636	34637	73539	73539					0.0702669554896147
YTRQRQLASL	10	Unmodified	_YTRQRQLASL_					0	0	0			REV__ENSG00000124302|ENST00000650847|CHST8	REV__ENSG00000124302|ENST00000650847|CHST8	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	412.566683	1234.67822	0.07846	3.237E-05	-0.31104	-0.00012832	-0.23258	-9.5954E-05	412.56651990538194	27.271	1.161	27.25	26.506	27.667	-0.021412	0.0015555	-0.00019766	NaN	19.626	115	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	651580	+		60293	15228	34636	34637							0.0702669554896147
YTRRAHIL	8	Unmodified	_YTRRAHIL_					0	0	0			REV__ENSG00000185386|ENST00000330651|MAPK11	REV__ENSG00000185386|ENST00000330651|MAPK11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	515.28466796875	2	515.30125	1028.58795	0.058442	3.0115E-05	-0.4472	-0.00023044	-0.38876	-0.00020033	515.8027659213604	18.262	0.39879	18.144	17.896	18.295	-0.11739					19	13	2	0	0	0	0.46092	1	1915	1915		2.0598	0.21551	1	39017	+		60294	18377	34637	34638	73540	73540					0.0747969101118997
YTRTLYQF	8	Unmodified	_YTRTLYQF_					0	0	0		nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.2921752929688	2	546.279649	1090.54475	0.23848	0.00013028	-2.9294	-0.0016003	-2.6909	-0.00147	546.2778373021287	61.696	0.76405	61.687	61.244	62.008	-0.0085564					39	27	2	0	0	0	0.41758	1	15228	15228		16.942	0	1	325280			60295	3460	34638	34639	73541	73541					0.003094564432331026
YTSFKWIEE	9	Unmodified	_YTSFKWIEE_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF;REV__nc|ENSG00000169247|Q8TF17-5|SH3TC2	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.2994995117188	2	601.790047	1201.56554	0.38127	0.00022944	-0.70832	-0.00042626	-0.32705	-0.00019682	601.7885923745912	73.397	0.10642	73.451	73.389	73.496	0.053841					5	3	2	0	0	0	0.25879	1	18743	18743		4.756	0.42677	1	46055	+		60296	15255;17505	34639	34640	73542	73542					-0.02717997967761221
YTSGDACR	8	Unmodified	_YTSGDACR_					0	0	0			REV__nc|ENSG00000116151|Q5T089-2|MORN1	REV__nc|ENSG00000116151|Q5T089-2|MORN1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.6822509765625	2	436.681985	871.349416	0.10806	4.7186E-05	-3.44	-0.0015022	-3.3319	-0.001455	436.6820259400696	63.687	0.32742	63.687	63.532	63.859	0					17	11	2	0	0	0	0.45307	1	15834	15834		4.756	2.1785	1	101990	+		60297	14914	34640	34641	73543	73543					-0.0914045735325999
YTSKHNKIL	9	Unmodified	_YTSKHNKIL_					0	0	0			REV__ENSG00000132793|ENST00000373257|LPIN3	REV__ENSG00000132793|ENST00000373257|LPIN3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.2982788085938	2	552.314023	1102.61349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.019	1	76.072	75.572	76.572	0.053413								0	0	0	0.21357	1	19551	19551		18.135	2.2878	1		+		60298	15588	34641	34642	73544	73544					0.06629120742968553
YTSLSSAKIKI	11	Unmodified	_YTSLSSAKIKI_					0	0	0			REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A	REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.56512451171875	3	404.239573	1209.69689	-1.1934	-0.00048241	2.6551	0.0010733	1.4618	0.0005909	404.240825108406	35.119	0.25307	35.119	34.917	35.17	0					11	8	2	0	0	0	0.33122	1	6980	6980		4.4062	0.81909	1	84388	+		60299	18838	34642	34643	73545	73545					0.10042812400138246
YTSQRFYMM	9	Unmodified	_YTSQRFYMM_					0	0	0		nc|ENSG00000178460|Q4G0Z9-2|MCMDC2;nc|ENSG00000178460|Q4G0Z9-4|MCMDC2;ENST00000428734.5_1_8:67786448-67831401:+|nuORF;ENSG00000178460|ENST00000422365|MCMDC2	nc|ENSG00000178460|Q4G0Z9-2|MCMDC2	nc|ENSG00000178460|Q4G0Z9-2|MCMDC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.6078796386719	3	409.515943	1225.526	0.16497	6.7558E-05	-2.6419	-0.0010819	-2.4769	-0.0010143	409.84996333424505	53.619	0.46273	53.609	53.353	53.815	-0.0096092					28	17	2	0	0	0	0.24993	1	12659	12659		8.7454	3.4485	1	212470			60300	7059	34643	34644	73546	73546					-0.07774164514489712
YTSTDLLRQF	10	Unmodified	_YTSTDLLRQF_					0	0	0			REV__ENSG00000163344|ENST00000368467|PMVK	REV__ENSG00000163344|ENST00000368467|PMVK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.5593566894531	3	415.215427	1242.62445	-0.35611	-0.00014786	-2.0621	-0.00085623	-2.4182	-0.0010041	415.2146979204814	13.739	0.33516	13.739	13.537	13.872	0					16	11	2	0	0	0	0.32122	1	480	480		2.086	0	1	28199	+		60301	17046	34644	34645	73547	73547					0.01284478326556382
YTSTKHSLF	9	Unmodified	_YTSTKHSLF_					0	0	0			REV__ENST00000282488.11_1_3:152180196-152180370:+|nuORF	REV__ENST00000282488.11_1_3:152180196-152180370:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.8344116210938	2	542.277106	1082.53966	0.60672	0.00032901	-0.15218	-8.2523E-05	0.45454	0.00024649	542.2767943434831	52.432	0.56812	52.482	52.309	52.878	0.050575					28	20	2	0	0	0	0.2322	1	12258	12258		14.838	0	1	302490	+		60302	19719	34645	34646	73548	73548					0.0016915258061089844
YTSVKQVSSAE	11	Unmodified	_YTSVKQVSSAE_					0	0	0		nc|ENSG00000284762|O95263-2|PDE8B;nc|ENSG00000284762|O95263-3|PDE8B;nc|ENSG00000284762|O95263-6|PDE8B;ENSG00000113231|ENST00000264917|PDE8B	nc|ENSG00000284762|O95263-2|PDE8B	nc|ENSG00000284762|O95263-2|PDE8B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.3287963867188	2	599.801143	1197.58773	1.0755	0.00064506	3.6856	0.0022106	4.761	0.0028557	600.3048933228529	56.218	0.18746	56.297	56.17	56.358	0.078674					8	6	2	0	0	0	0.32367	1	13459	13459		13.615	6.8917	1	165020			60303	2481	34646	34647	73549	73549					-0.0031581828995967953
YTSYILAFQ	9	Unmodified	_YTSYILAFQ_					0	0	0		ENSG00000111537|ENST00000229135|IFNG	ENSG00000111537|ENST00000229135|IFNG	ENSG00000111537|ENST00000229135|IFNG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3003540039062	2	553.281857	1104.54916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.895	1	64.895	64.395	65.395	0								0	0	0	0.22065	1	16158	16158		15.847	1.0089	1				60304	2368	34647	34648	73550	73550					0.001069208661419907
YTTDNFVLF	9	Unmodified	_YTTDNFVLF_					0	0	0		ENST00000376395.8_2_9:86276119-86276320:-|nuORF	ENST00000376395.8_2_9:86276119-86276320:-|nuORF	ENST00000376395.8_2_9:86276119-86276320:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	560.271240234375	2	560.27149	1118.52843	0.49124	0.00027523	-1.4402	-0.0008069	-0.94896	-0.00053167	560.2711184313414	67.701	0.70444	67.779	67.408	68.112	0.078041					57	24	3	0	0	0	0.17242	1	16973	16973		36.127	1.7253	1	557640			60305	9921	34648	34649	73551	73551					-0.02609669513526569
YTTDNFVLF	9	Unmodified	_YTTDNFVLF_					0	0	0		ENST00000376395.8_2_9:86276119-86276320:-|nuORF	ENST00000376395.8_2_9:86276119-86276320:-|nuORF	ENST00000376395.8_2_9:86276119-86276320:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.2694091796875	2	560.27149	1118.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.795	1	94.793	94.293	95.293	-0.0020142								0	0	0	0.25352	1	25301	25301		5.2307	0.47466	1				60306	9921	34648	34649	73552	73552					-0.02609669513526569
YTTDRVMTV	9	Oxidation (M)	_YTTDRVM(Oxidation (M))TV_		YTTDRVM(1)TV		YTTDRVM(91)TV	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.2662963867188	2	551.265881	1100.51721	0.39893	0.00021992	0.79597	0.00043879	1.1949	0.00065871	551.2659510934116	28.849	0.77751	28.849	28.522	29.3	0					71	27	4	0	0	0	0.0044119	2	5107	5057;5107		91.085	53.111	1	622450			60307	7884;2727	34649	34650	73553;73554	73554		346			-0.029028148793031505
YTTDRVMTV	9	Oxidation (M)	_YTTDRVM(Oxidation (M))TV_		YTTDRVM(1)TV		YTTDRVM(82)TV	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.2662353515625	2	551.265881	1100.51721	0.37338	0.00020583	1.0535	0.00058076	1.4269	0.00078659	551.2659509329357	28.827	0.71357	28.822	28.542	29.256	-0.0042572					60	24	4	0	0	0	0.0083763	2	5103	5051;5103		81.915	33.569	1	597180			60308	7884;2727	34649	34650	73555;73556	73556		346			-0.029028148793031505
YTTDRVMTV	9	Oxidation (M)	_YTTDRVM(Oxidation (M))TV_		YTTDRVM(1)TV		YTTDRVM(100)TV	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.2662353515625	2	551.265881	1100.51721	0.20668	0.00011394	1.039	0.00057277	1.2457	0.00068671	551.2660664683575	28.824	0.79191	28.824	28.524	29.316	0.0004673					72	28	4	0	0	0	0.0031966	2	5050	5050;5095		100.71	58.869	1	700350			60309	7884;2727	34649	34650	73557;73558	73557		346			-0.029028148793031505
YTTEKLPEV	9	Unmodified	_YTTEKLPEV_					0	0	0			REV__ENST00000550865.1_1_12:76784181-76788455:-|nuORF	REV__ENST00000550865.1_1_12:76784181-76788455:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.798583984375	2	540.284597	1078.55464	0.57143	0.00030873	-2.551	-0.0013783	-1.9796	-0.0010695	540.2819884595852	45.662	0.42507	45.722	45.475	45.9	0.059834					24	14	3	0	0	0	0.2322	1	10179	10179		14.838	0	1	189840	+		60310	14055	34650	34651	73559	73559					0.018505996579506245
YTTGLSQAQF	10	Unmodified	_YTTGLSQAQF_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2850952148438	2	558.272021	1114.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.226	1	53.226	52.726	53.726	0								0	0	0	0.18461	1	12554	12554		41.84	23.705	1		+		60311	19349	34651	34652	73560	73560					-0.023194551446067635
YTTHDLIL	8	Unmodified	_YTTHDLIL_					0	0	0		nc|ENSG00000134765|Q08554-2|DSC1;ENSG00000134765|ENST00000257198|DSC1	nc|ENSG00000134765|Q08554-2|DSC1	nc|ENSG00000134765|Q08554-2|DSC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	488.74139404296875	2	488.260925	974.507297	0.63625	0.00031066	-2.0259	-0.00098919	-1.3897	-0.00067853	488.2595642398235	77.933	0.35638	77.988	77.867	78.223	0.055412					17	12	2	0	0	0	0.34046	1	20143	20143		9.3474	0	1	114010			60312	3810	34652	34653	73561	73561					0.019023651776365114
YTTHDLIL	8	Unmodified	_YTTHDLIL_					0	0	0		nc|ENSG00000134765|Q08554-2|DSC1;ENSG00000134765|ENST00000257198|DSC1	nc|ENSG00000134765|Q08554-2|DSC1	nc|ENSG00000134765|Q08554-2|DSC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.7419738769531	2	488.260925	974.507297	0.85047	0.00041525	-2.1052	-0.0010279	-1.2547	-0.00061262	488.2602430366099	78.105	0.52977	78.074	77.898	78.428	-0.030434					29	19	2	0	0	0	0.34046	1	20174	20174		9.3474	0	1	80010			60313	3810	34652	34653	73562	73562					0.019023651776365114
YTTKEAANPVP	11	Unmodified	_YTTKEAANPVP_					0	0	0			REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.3526000976562	2	595.806228	1189.5979	0.61519	0.00036654	0.051748	3.0832E-05	0.66694	0.00039737	595.80615817525	49.381	0.43653	49.381	49.105	49.542	0					27	15	2	0	0	0	0.32557	1	11408	11408		15.248	3.7538	1	209890	+		60314	13518	34653	34654	73563	73563					0.010687894352031435
YTTSIDKWT	9	Unmodified	_YTTSIDKWT_					0	0	0			REV__ENST00000275767.3_1_7:134850415-134850709:+|nuORF	REV__ENST00000275767.3_1_7:134850415-134850709:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.3060913085938	2	557.774396	1113.53424	0.29182	0.00016277	-0.64243	-0.00035833	-0.3506	-0.00019556	557.7748019715957	43.188	0.54593	43.188	42.842	43.388	0					27	19	2	0	0	0	0.1939	1	9472	9472		24.021	11.78	1	137260	+		60315	19692	34654	34655	73564	73564					-0.017985710018592727
YTTVRREF	8	Unmodified	_YTTVRREF_					0	0	0		ENSG00000197165|ENST00000335715|SULT1A2	ENSG00000197165|ENST00000335715|SULT1A2	ENSG00000197165|ENST00000335715|SULT1A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2589721679688	2	536.282723	1070.55089	0.53073	0.00028462	0.81366	0.00043635	1.3444	0.00072097	536.2820972406657	46.107	0.24502	46.172	46.008	46.253	0.065048					10	8	2	0	0	0	0.34185	1	10349	10349		5.7604	0	1	180210			60316	7938	34655	34656	73565	73565					0.01843974674761739
YTVARVRAP	9	Unmodified	_YTVARVRAP_					0	0	0			REV__nc|ENSG00000196388|Q0VD86-2|INCA1	REV__nc|ENSG00000196388|Q0VD86-2|INCA1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2709350585938	2	516.801083	1031.58761	0.24603	0.00012715	-0.25101	-0.00012972	-0.0049759	-2.5716E-06	516.8008158065059	18.083	0.43329	18.083	17.898	18.332	0					26	14	3	0	0	0	0.26145	1	1781	1781		2.0598	0.21551	1	52739	+		60317	18646	34656	34657	73566	73566					0.07308271291321944
YTVARVRAP	9	Unmodified	_YTVARVRAP_					0	0	0			REV__nc|ENSG00000196388|Q0VD86-2|INCA1	REV__nc|ENSG00000196388|Q0VD86-2|INCA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	516.801083	1031.58761	0.094948	4.9069E-05	0.35786	0.00018494	0.45281	0.00023401	516.800910183565	18.275	0.4004	18.158	17.957	18.358	-0.11739	-0.00031287	0.00034935	NaN	2.0598	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47992	+		60318	18646	34656	34657							0.07308271291321944
YTVARVRAP	9	Unmodified	_YTVARVRAP_					0	0	0			REV__nc|ENSG00000196388|Q0VD86-2|INCA1	REV__nc|ENSG00000196388|Q0VD86-2|INCA1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	516.801083	1031.58761	-0.031959	-1.6516E-05	0.13414	6.9326E-05	0.10219	5.281E-05	516.8010673239203	18.292	0.42762	18.234	18.031	18.458	-0.058172	0.07581	0.00011812	NaN	2.0598	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68375	+		60319	18646	34656	34657							0.07308271291321944
YTVELLLRLQ	10	Unmodified	_YTVELLLRLQ_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.3705444335938	2	624.371538	1246.72852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.888	1	91.888	91.388	92.388	0								0	0	0	0.38126	1	24417	24417		1.6526	0.17072	1		+		60320	17534	34657	34658	73567	73567					0.11502805154077578
YTVELLLRLQ	10	Unmodified	_YTVELLLRLQ_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.3726196289062	2	624.371538	1246.72852	-0.020231	-1.2632E-05	1.5248	0.00095205	1.5046	0.00093941	624.3721950812269	98.273	0.2373	98.273	98.131	98.368	0					40	27	2	0	0	0	0.32123	1	26259	26259		1.6526	0.32309	1	257370	+		60321	17534	34657	34658	73568	73568					0.11502805154077578
YTVELLLRLQ	10	Unmodified	_YTVELLLRLQ_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.3720092773438	2	624.371538	1246.72852	0.076972	4.8059E-05	0.87179	0.00054432	0.94877	0.00059238	624.371837932729	90.961	0.52603	91.052	90.816	91.342	0.090668					66	37	2	0	0	0	0.40992	1	24088	24088		1.6526	0	1	1651500	+		60322	17534	34657	34658	73569	73569					0.11502805154077578
YTVELLLRLQ	10	Unmodified	_YTVELLLRLQ_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.3729248046875	2	624.371538	1246.72852	0.35777	0.00022338	1.0478	0.00065423	1.4056	0.00087761	624.3721592739081	91.801	0.31407	91.802	91.664	91.978	0.00046539					29	17	2	0	0	0	0.40992	1	24421	24421		1.6526	0.17072	1	226180	+		60323	17534	34657	34658	73570	73570					0.11502805154077578
YTVELLLRLQ	10	Unmodified	_YTVELLLRLQ_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	624.371538	1246.72852	0.34714	0.00021674	0.64792	0.00040454	0.99506	0.00062129	624.371775401704	91.071	0.54411	91.071	90.853	91.397	0	0.015569	-4.662E-05	NaN	1.6526	73	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2391300	+		60324	17534	34657	34658							0.11502805154077578
YTVELLLRLQ	10	Unmodified	_YTVELLLRLQ_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	624.371538	1246.72852	0.33668	0.00021021	0.55337	0.00034551	0.89005	0.00055572	624.3717192117628	91.043	0.50052	91.044	90.847	91.347	0.00047302	-0.011922	-0.00016469	NaN	1.6526	65	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2140600	+		60325	17534	34657	34658							0.11502805154077578
YTVERTKCLL	10	Unmodified	_YTVERTKCLL_					0	0	0		nc|ENSG00000168594|Q9UKF5-2|ADAM29;nc|ENSG00000168594|Q9UKF5-3|ADAM29;ENSG00000168594|ENST00000359240|ADAM29	nc|ENSG00000168594|Q9UKF5-2|ADAM29	nc|ENSG00000168594|Q9UKF5-2|ADAM29	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.9009704589844	3	409.225158	1224.65364	-0.063571	-2.6015E-05	-1.5483	-0.00063362	-1.6119	-0.00065964	409.2246179583145	42.577	0.8391	42.668	42.23	43.069	0.091362					42	29	2	0	0	0	0.29589	1	9374	9374		14.957	7.8554	1	513610			60326	6286	34658	34659	73571	73571					0.05030299351210488
YTVGFPVT	8	Unmodified	_YTVGFPVT_					0	0	0			REV__nc|ENSG00000184719|Q5VYX0-2|RNLS	REV__nc|ENSG00000184719|Q5VYX0-2|RNLS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	441.788330078125	2	442.231636	882.448719	0.21459	9.4896E-05	-0.20339	-8.9945E-05	0.011196	4.9514E-06	442.23139836544476	39.732	0.49582	39.831	39.65	40.146	0.099407					30	17	2	0	0	0	0.33993	1	8449	8449		11.64	0	1	267520	+		60327	18331	34659	34660	73572	73572					0.0027930860313745143
YTVGNFLPSV	10	Unmodified	_YTVGNFLPSV_					0	0	0			REV__PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant	REV__PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.787841796875	2	548.787307	1095.56006	0.2376	0.00013039	0.53452	0.00029334	0.77212	0.00042373	548.7876186023481	14.79	0.28716	14.682	14.562	14.849	-0.10802					23	9	3	0	0	0	0.34053	1	838	838		14.405	1.3629	1	444520	+		60328	19181	34660	34661	73573	73573					0.016103232404248047
YTVHTGNTWVI	11	Unmodified	_YTVHTGNTWVI_					0	0	0			REV__HAVCR1|p.L305Ffs*27|1|0.1|ENSG00000113249|chr5:157037287-157037288|-/ACAGAAAT|frameshift_variant	REV__HAVCR1|p.L305Ffs*27|1|0.1|ENSG00000113249|chr5:157037287-157037288|-/ACAGAAAT|frameshift_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8878479003906	3	430.887422	1289.64044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.511	1	61.511	61.011	62.011	0								0	0	0	0.35922	1	15118	15118		2.8433	0	1		+		60329	14799	34661	34662	73574	73574					0.0072018456346540916
YTVRGLRPNTI	11	Unmodified	_YTVRGLRPNTI_					0	0	0		nc|ENSG00000185008|Q9HCK4-2|ROBO2;nc|ENSG00000185008|Q9HCK4|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;ENSG00000185008|ENST00000696593|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.91650390625	3	430.582333	1288.72517	0.037848	1.6297E-05	-0.74314	-0.00031998	-0.70529	-0.00030369	430.5819213707132	32.004	0.9732	32.004	31.719	32.692	0					70	34	3	0	0	0	0.25499	1	6091	6091		16.275	2.0564	1	1333900			60330	7494	34662	34663	73575	73575					0.09235555100099191
YTVRGLRPNTI	11	Unmodified	_YTVRGLRPNTI_					0	0	0		nc|ENSG00000185008|Q9HCK4-2|ROBO2;nc|ENSG00000185008|Q9HCK4|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;ENSG00000185008|ENST00000696593|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	430.58184814453125	3	430.582333	1288.72517	-0.023042	-9.9215E-06	-0.73229	-0.00031531	-0.75533	-0.00032523	430.5819959491201	31.98	1.0299	32.021	31.696	32.726	0.040991					72	36	3	0	0	0	0.26921	1	6065	6065		15.538	0	1	1254000			60331	7494	34662	34663	73576	73576					0.09235555100099191
YTVRGLRPNTI	11	Unmodified	_YTVRGLRPNTI_					0	0	0		nc|ENSG00000185008|Q9HCK4-2|ROBO2;nc|ENSG00000185008|Q9HCK4|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;ENSG00000185008|ENST00000696593|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	430.582333	1288.72517	0.037848	1.6297E-05	-0.74314	-0.00031998	-0.70529	-0.00030369	430.5819213707132	32.004	0.9732	32.004	31.719	32.692	0	-0.0056116	6.5853E-05	NaN	16.275	70	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1333900			60332	7494	34662	34663							0.09235555100099191
YTVRGLRPNTI	11	Unmodified	_YTVRGLRPNTI_					0	0	0		nc|ENSG00000185008|Q9HCK4-2|ROBO2;nc|ENSG00000185008|Q9HCK4|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;ENSG00000185008|ENST00000696593|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	430.582333	1288.72517	0.16289	7.0138E-05	-0.97629	-0.00042037	-0.8134	-0.00035024	430.58192952059096	31.962	0.89434	32.004	31.768	32.662	0.042364	-0.0056196	-0.00023532	NaN	16.275	64	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1502900			60333	7494	34662	34663							0.09235555100099191
YTVRGLRPNTI	11	Unmodified	_YTVRGLRPNTI_					0	0	0		nc|ENSG00000185008|Q9HCK4-2|ROBO2;nc|ENSG00000185008|Q9HCK4|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;ENSG00000185008|ENST00000696593|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	430.582333	1288.72517	-0.023042	-9.9215E-06	-0.73229	-0.00031531	-0.75533	-0.00032523	430.5819959491201	31.98	1.0299	32.021	31.696	32.726	0.040991	0.011231	7.9864E-05	NaN	16.275	72	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1254000			60334	7494	34662	34663							0.09235555100099191
YTVTANEGSF	10	Unmodified	_YTVTANEGSF_					0	0	0			REV__ENSG00000114529|ENST00000264848|C3orf52	REV__ENSG00000114529|ENST00000264848|C3orf52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7484130859375	2	544.748379	1087.4822	0.91502	0.00049846	0.0017459	9.511E-07	0.91677	0.00049941	544.7480372561707	50.652	0.75735	50.652	50.191	50.949	0					75	27	4	0	0	0	0.12843	1	11747	11747		41.84	1.8823	1	1005300	+		60335	14837	34663	34664	73577	73577					-0.05803734415599138
YTVTANEGSF	10	Unmodified	_YTVTANEGSF_					0	0	0			REV__ENSG00000114529|ENST00000264848|C3orf52	REV__ENSG00000114529|ENST00000264848|C3orf52	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7485961914062	2	544.748379	1087.4822	1.1533	0.00062828	-0.16756	-9.1279E-05	0.98578	0.000537	544.7480018329607	50.658	0.56315	50.679	50.413	50.976	0.020695					68	20	4	0	0	0	0.12843	1	11750	11750		41.84	1.8823	1	948750	+		60336	14837	34663	34664	73578	73578					-0.05803734415599138
YTVYPPPHQV	10	Unmodified	_YTVYPPPHQV_					0	0	0		ENST00000540158.1_1_12:109535484-109537104:+|nuORF;nc|ENSG00000076248|P13051-2|UNG;ENSG00000076248|ENST00000242576|UNG	ENST00000540158.1_1_12:109535484-109537104:+|nuORF	ENST00000540158.1_1_12:109535484-109537104:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.3135986328125	2	600.806031	1199.59751	0.54035	0.00032464	0.94042	0.00056501	1.4808	0.00088966	600.8059186086671	71.644	1.8978	71.644	71.183	73.081	0					276	68	6	0	0	0	0.27059	2	18356	18306;18356		24.021	5.8742	1	3484500			60337	1061	34664	34665	73579;73580	73580					0.00569414506026078
YTVYPPPHQV	10	Unmodified	_YTVYPPPHQV_					0	0	0		ENST00000540158.1_1_12:109535484-109537104:+|nuORF;nc|ENSG00000076248|P13051-2|UNG;ENSG00000076248|ENST00000242576|UNG	ENST00000540158.1_1_12:109535484-109537104:+|nuORF	ENST00000540158.1_1_12:109535484-109537104:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.3134155273438	2	600.806031	1199.59751	0.53084	0.00031893	0.93165	0.00055974	1.4625	0.00087868	600.8059104074641	71.586	2.0277	71.643	71.04	73.068	0.056572					261	73	6	0	0	0	0.33817	1	18292	18292		14.838	7.549	1	4156400			60338	1061	34664	34665	73581	73581					0.00569414506026078
YTVYPPPHQV	10	Unmodified	_YTVYPPPHQV_					0	0	0		ENST00000540158.1_1_12:109535484-109537104:+|nuORF;nc|ENSG00000076248|P13051-2|UNG;ENSG00000076248|ENST00000242576|UNG	ENST00000540158.1_1_12:109535484-109537104:+|nuORF	ENST00000540158.1_1_12:109535484-109537104:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.3135375976562	2	600.806031	1199.59751	0.46535	0.00027958	0.89549	0.00053801	1.3608	0.0008176	600.8059824047092	71.712	2.0009	71.684	71.074	73.075	-0.027275					287	71	6	0	0	0	0.30958	4	18361	18145;18329;18361;18415		19.257	7.549	1	5216000			60339	1061	34664	34665	73582;73583;73584;73585	73584					0.00569414506026078
YTVYVSMI	8	Unmodified	_YTVYVSMI_					0	0	0		nc|ENSG00000163636|Q15008-4|PSMD6;ENSG00000163636|ENST00000295901|PSMD6;ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF	nc|ENSG00000163636|Q15008-4|PSMD6	nc|ENSG00000163636|Q15008-4|PSMD6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.77679443359375	2	488.246429	974.478305	0.74399	0.00036325	2.9372	0.0014341	3.6812	0.0017973	488.2479456128249	36.445	0.6701	36.531	36.333	37.003	0.08625					28	23	2	0	0	0	0.29855	1	7397	7397		32.117	12.678	1	150260			60340	12799	34665	34666	73586	73586					-0.009954954430213547
YTVYWIGFL	9	Unmodified	_YTVYWIGFL_					0	0	0			REV__nc|ENSG00000175193|Q9H300-2|PARL	REV__nc|ENSG00000175193|Q9H300-2|PARL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.2891235351562	2	581.302593	1160.59063	0.35332	0.00020538	-2.8155	-0.0016367	-2.4622	-0.0014313	581.3012856902417	72.087	0.68419	72.087	71.69	72.374	0					43	24	2	0	0	0	0.10075	1	18272	18272		38.151	5.8457	1	165590	+		60341	17877	34666	34667	73587	73587					0.016761016254804417
YTVYWIGFL	9	Unmodified	_YTVYWIGFL_					0	0	0			REV__nc|ENSG00000175193|Q9H300-2|PARL	REV__nc|ENSG00000175193|Q9H300-2|PARL	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	581.302593	1160.59063	0.35332	0.00020538	-2.8155	-0.0016367	-2.4622	-0.0014313	581.3012856902417	72.087	0.68419	72.087	71.69	72.374	0	0.010573	-0.00010301	NaN	38.151	43	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165590	+		60342	17877	34666	34667							0.016761016254804417
YTWPDTHWPS	10	Unmodified	_YTWPDTHWPS_					0	0	0		nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-2|TNS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	430.88818359375	3	430.524372	1288.55129	-0.046134	-1.9862E-05	2.0433	0.00087968	1.9972	0.00085982	430.5252588460168	24.262	0.35828	24.19	24.055	24.414	-0.072559					19	11	2	0	0	0	0.32082	1	3722	3722		3.3196	1.8645	1	44057			60343	12595	34667	34668	73588	73588					-0.08144650396047837
YTWPDTHWPS	10	Unmodified	_YTWPDTHWPS_					0	0	0		nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-2|TNS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	430.524372	1288.55129	-0.17977	-7.7394E-05	2.1593	0.00092965	1.9796	0.00085226	430.5253481901369	24.097	0.36919	24.097	23.943	24.312	0	-0.093152	2.5974E-05	NaN	3.3196	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33470			60344	12595	34667	34668							-0.08144650396047837
YTWPDTHWPS	10	Unmodified	_YTWPDTHWPS_					0	0	0		nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-2|TNS1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	430.524372	1288.55129	-0.11767	-5.0659E-05	2.2545	0.00097063	2.1369	0.00091997	430.52544105961937	24.322	0.31646	24.283	24.049	24.366	-0.038927	0.093284	0.0001489	NaN	3.3196	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60029			60345	12595	34667	34668							-0.08144650396047837
YTYCMDTEI	9	Carbamidomethyl (C),Oxidation (M)	_YTYC(Carbamidomethyl (C))M(Oxidation (M))DTEI_	YTYC(1)MDTEI	YTYCM(1)DTEI	YTYC(64)MDTEI	YTYCM(64)DTEI	0	1	1		ENST00000427960.5_1_2:190306282-190313199:+|nuORF	ENST00000427960.5_1_2:190306282-190313199:+|nuORF	ENST00000427960.5_1_2:190306282-190313199:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	606.233642578125	2	606.23339	1210.45223	0.52829	0.00032027	-0.1181	-7.1593E-05	0.41019	0.00024867	606.2333111822222	58.224	0.70078	58.224	57.953	58.654	0					64	23	4	0	0	0	0.019896	2	14092	14092;14142		64.236	64.236	1	1400800			60346	10441	34668	34669	73589;73590	73589	14	944			-0.1445817746746343
YTYCMDTEI	9	Carbamidomethyl (C),Oxidation (M)	_YTYC(Carbamidomethyl (C))M(Oxidation (M))DTEI_	YTYC(1)MDTEI	YTYCM(1)DTEI	YTYC(64)MDTEI	YTYCM(64)DTEI	0	1	1		ENST00000427960.5_1_2:190306282-190313199:+|nuORF	ENST00000427960.5_1_2:190306282-190313199:+|nuORF	ENST00000427960.5_1_2:190306282-190313199:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	606.233642578125	2	606.23339	1210.45223	0.52343	0.00031732	-0.16323	-9.8954E-05	0.3602	0.00021836	606.2332077098068	58.035	0.71457	58.12	57.891	58.606	0.085621					69	25	4	0	0	0	0.019896	2	14035	14035;14084		64.236	64.236	1	1210600			60347	10441	34668	34669	73591;73592	73591	14	944			-0.1445817746746343
YTYCMDTEI	9	Carbamidomethyl (C),Oxidation (M)	_YTYC(Carbamidomethyl (C))M(Oxidation (M))DTEI_	YTYC(1)MDTEI	YTYCM(1)DTEI	YTYC(74)MDTEI	YTYCM(74)DTEI	0	1	1		ENST00000427960.5_1_2:190306282-190313199:+|nuORF	ENST00000427960.5_1_2:190306282-190313199:+|nuORF	ENST00000427960.5_1_2:190306282-190313199:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.2337036132812	2	606.23339	1210.45223	0.69537	0.00042155	-0.27275	-0.00016535	0.42262	0.00025621	606.2332358210676	58.32	0.67685	58.304	58.034	58.711	-0.015472					66	24	4	0	0	0	0.013258	2	14160	14114;14160		74.423	58.576	1	1546600			60348	10441	34668	34669	73593;73594	73594	14	944			-0.1445817746746343
YTYEHDPITK	10	Unmodified	_YTYEHDPITK_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	633.803955078125	2	633.803685	1265.59282	0.36693	0.00023256	0.25265	0.00016013	0.61957	0.00039269	633.8038734773304	28.875	0.54491	28.87	28.629	29.174	-0.0042553					29	18	3	0	0	0	0.08115	1	5097	5097		59.052	50.897	1	218700			60349	2643	34669	34670	73595	73595					-0.02935514427417729
YTYEHDPITK	10	Unmodified	_YTYEHDPITK_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.8041381835938	2	633.803685	1265.59282	0.32222	0.00020422	0.15348	9.7274E-05	0.4757	0.0003015	633.803867551447	28.843	0.43928	28.844	28.661	29.1	0.0004673					27	15	2	0	0	0	0.21875	1	5101	5101		34.222	29.325	1	156280			60350	2643	34669	34670	73596	73596					-0.02935514427417729
YTYEHDPITK	10	Unmodified	_YTYEHDPITK_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	633.803685	1265.59282	0.38561	0.0002444	0.28194	0.0001787	0.66756	0.0004231	633.803809115074	28.904	0.47661	28.904	28.64	29.117	0	0.031267	5.5301E-05	NaN	59.052	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209230			60351	2643	34669	34670							-0.02935514427417729
YTYKRLTAIH	10	Unmodified	_YTYKRLTAIH_					0	0	0			REV__nc|ENSG00000134644|Q14671-4|PUM1	REV__nc|ENSG00000134644|Q14671-4|PUM1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	422.5818176269531	3	422.571545	1264.69281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.491	1	85.478	84.978	85.978	-0.01284								0	0	0	0.37157	1	22445	22445		5.4027	2.3304	1		+		60352	15691	34670	34671	73597	73597					0.07104767697069292
YTYLEKSMV	9	Unmodified	_YTYLEKSMV_					0	0	0		ENSG00000149256|ENST00000278550|TENM4;ENSG00000218336|ENST00000511685|TENM3	ENSG00000149256|ENST00000278550|TENM4;ENSG00000218336|ENST00000511685|TENM3	ENSG00000218336|ENST00000511685|TENM3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.2794189453125	2	567.281	1132.54745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.7	1	117.7	117.2	118.2	0								0	0	0	0.2575	1	30427	30427		3.9444	0	1				60353	8414;4852	34671	34672	73598	73598					-0.013524562141356
YTYLYGIKL	9	Unmodified	_YTYLYGIKL_					0	0	0			REV__nc|ENSG00000166377|O43861-2|ATP9B	REV__nc|ENSG00000166377|O43861-2|ATP9B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3291625976562	2	567.3157	1132.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.73	1	112.72	112.22	113.22	-0.015625								0	0	0	0.25631	1	29319	29319		4.3292	1.594	1		+		60354	17315	34672	34673	73599	73599					0.055843707969415846
YTYLYGIKL	9	Unmodified	_YTYLYGIKL_					0	0	0			REV__nc|ENSG00000166377|O43861-2|ATP9B	REV__nc|ENSG00000166377|O43861-2|ATP9B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.32958984375	2	567.3157	1132.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.5	1	113.48	112.98	113.98	-0.017303								0	0	0	0.25631	1	29502	29502		4.3292	1.0479	1		+		60355	17315	34672	34673	73600	73600					0.055843707969415846
YTYLYGIKL	9	Unmodified	_YTYLYGIKL_					0	0	0			REV__nc|ENSG00000166377|O43861-2|ATP9B	REV__nc|ENSG00000166377|O43861-2|ATP9B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.330078125	2	567.3157	1132.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.51	1	115.49	114.99	115.99	-0.020988								0	0	0	0.25631	1	29953	29953		4.3292	0.38484	1		+		60356	17315	34672	34673	73601	73601					0.055843707969415846
YTYLYGIKL	9	Unmodified	_YTYLYGIKL_					0	0	0			REV__nc|ENSG00000166377|O43861-2|ATP9B	REV__nc|ENSG00000166377|O43861-2|ATP9B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.330322265625	2	567.3157	1132.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.14	1	116.12	115.62	116.62	-0.022781								0	0	0	0.26334	1	30095	30095		2.0598	0.40713	1		+		60357	17315	34672	34673	73602	73602					0.055843707969415846
YTYLYGIKL	9	Unmodified	_YTYLYGIKL_					0	0	0			REV__nc|ENSG00000166377|O43861-2|ATP9B	REV__nc|ENSG00000166377|O43861-2|ATP9B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.33056640625	2	567.3157	1132.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.83	1	119.81	119.31	120.31	-0.024361								0	0	0	0.25631	1	30922	30922		4.3292	0.73274	1		+		60358	17315	34672	34673	73603	73603					0.055843707969415846
YTYLYGIKL	9	Unmodified	_YTYLYGIKL_					0	0	0			REV__nc|ENSG00000166377|O43861-2|ATP9B	REV__nc|ENSG00000166377|O43861-2|ATP9B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.330322265625	2	567.3157	1132.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.97	1	119.95	119.45	120.45	-0.024361								0	0	0	0.25631	1	30955	30955		4.3292	2.2695	1		+		60359	17315	34672	34673	73604	73604					0.055843707969415846
YTYLYGIKL	9	Unmodified	_YTYLYGIKL_					0	0	0			REV__nc|ENSG00000166377|O43861-2|ATP9B	REV__nc|ENSG00000166377|O43861-2|ATP9B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3300170898438	2	567.3157	1132.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.8	1	114.81	114.31	115.31	0.016708								0	0	0	0.26334	1	29847	29847		2.0598	0.57785	1		+		60360	17315	34672	34673	73605	73605					0.055843707969415846
YTYLYGIKL	9	Unmodified	_YTYLYGIKL_					0	0	0			REV__nc|ENSG00000166377|O43861-2|ATP9B	REV__nc|ENSG00000166377|O43861-2|ATP9B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.330078125	2	567.3157	1132.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.53	1	115.55	115.05	116.05	0.018738								0	0	0	0.25631	1	30004	30004		4.3292	0.73274	1		+		60361	17315	34672	34673	73606	73606					0.055843707969415846
YTYQWRQTI	9	Unmodified	_YTYQWRQTI_					0	0	0		nc|ENSG00000116962|P14543-2|NID1;ENSG00000116962|ENST00000264187|NID1	nc|ENSG00000116962|P14543-2|NID1	nc|ENSG00000116962|P14543-2|NID1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.8150024414062	2	629.814387	1257.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.706	1	59.694	59.194	60.194	-0.011486								0	0	0	0.24264	1	14547	14547		8.7454	0	1				60362	2764	34673	34674	73607	73607					-0.004280846080291667
YTYSVESWT	9	Unmodified	_YTYSVESWT_					0	0	0			REV__ENSG00000148429|ENST00000609104|USP6NL	REV__ENSG00000148429|ENST00000609104|USP6NL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.846923828125	2	568.250754	1134.48696	0.32733	0.00018601	1.4231	0.00080869	1.7504	0.00099469	568.2497722774499	68.518	0.087669	68.498	68.429	68.516	-0.019157					4	2	2	0	0	0	0.11486	1	17254	17254		48.346	16.04	1	99927	+		60363	16425	34674	34675	73608	73608					-0.07490850272847638
YTYVDPKYTLL	11	Unmodified	_YTYVDPKYTLL_					0	0	0			REV__nc|nan|Q9H3H3-1|C11orf68	REV__nc|nan|Q9H3H3-1|C11orf68	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	459.2501525878906	3	459.242983	1374.70712	-0.071393	-3.2787E-05	-0.087546	-4.0205E-05	-0.15894	-7.2991E-05	459.2428241906825	23.238	0.5486	23.15	22.937	23.486	-0.087608					43	19	3	0	0	0	0.45202	1	3397	3397		4.4062	0	1	89003	+		60364	17899	34675	34676	73609	73609					0.034753753347104066
YTYWSELL	8	Unmodified	_YTYWSELL_					0	0	0			REV__Harlequin-int_dup467|chr19:52899759-52902003:-|1.2947376396248438|0.289692074971568|2.16|541.0|98|1|anti-sense	REV__Harlequin-int_dup467|chr19:52899759-52902003:-|1.2947376396248438|0.289692074971568|2.16|541.0|98|1|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7615966796875	2	537.760758	1073.50696	0.63535	0.00034166	1.2418	0.00066781	1.8772	0.0010095	537.7611542924841	82.678	0.40786	82.678	82.436	82.844	0					35	14	3	0	0	0	0.42446	1	21597	21597		14.582	0	1	542540	+		60365	22705	34676	34677	73610	73610					-0.02685054542234866
YVAALYPLL	9	Unmodified	_YVAALYPLL_					0	0	0			REV__ENST00000510365.5_1_4:8376552-8417570:-|nuORF	REV__ENST00000510365.5_1_4:8376552-8417570:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	513.2927856445312	2	511.799686	1021.58482	0.25702	0.00013154	2.2452	0.0011491	2.5022	0.0012806	512.3025181983506	63.219	0.7594	63.21	62.804	63.564	-0.0085564					73	27	4	0	0	0	0.16905	1	15622	15622		28.173	5.0248	1	632610	+		60366	13983	34677	34678	73611	73611					0.07489003113778381
YVAASRTKLL	10	Unmodified	_YVAASRTKLL_					0	0	0			REV__ENST00000527285.1_1_11:18728552-18728651:+|nuORF	REV__ENST00000527285.1_1_11:18728552-18728651:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.8056640625	2	561.337498	1120.66044	0.44604	0.00025038	0.43852	0.00024616	0.88456	0.00049654	561.3376612042823	51.34	0.2911	51.34	51.139	51.43	0					16	10	2	0	0	0	0.31165	1	11962	11962		10.824	2.0785	1	178080	+		60367	21975	34678	34679	73612	73612					0.10493980294063476
YVAASRTKLL	10	Unmodified	_YVAASRTKLL_					0	0	0			REV__ENST00000527285.1_1_11:18728552-18728651:+|nuORF	REV__ENST00000527285.1_1_11:18728552-18728651:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8054809570312	2	561.337498	1120.66044	0.35436	0.00019892	0.94814	0.00053223	1.3025	0.00073114	561.3379952452917	51.326	0.39119	51.336	51.169	51.561	0.0095673					19	14	2	0	0	0	0.31165	1	11973	11973		15.847	2.8047	1	136520	+		60368	21975	34678	34679	73613	73613					0.10493980294063476
YVADESYFSL	10	Unmodified	_YVADESYFSL_					0	0	0			REV__TAS2R39|p.L230Cfs*2|1|0.21|ENSG00000236398|chr7:143184104-143184104|C/-|frameshift_variant	REV__TAS2R39|p.L230Cfs*2|1|0.21|ENSG00000236398|chr7:143184104-143184104|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	596.7702026367188	2	597.271687	1192.52882	0.47239	0.00028215	4.2122	0.0025158	4.6846	0.002798	597.2726364786059	76.695	0.59581	76.695	76.283	76.879	0					30	21	2	0	0	0	0.318	1	19690	19690		7.2892	0.56607	1	99640	+		60369	19150	34679	34680	73614	73614					-0.05974294584348172
YVADPVYRTF	10	Unmodified	_YVADPVYRTF_					0	0	0		ENSG00000107077|ENST00000381309|KDM4C	ENSG00000107077|ENST00000381309|KDM4C	ENSG00000107077|ENST00000381309|KDM4C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.57147216796875	3	410.876634	1229.60807	0.13989	5.7476E-05	1.2901	0.00053005	1.4299	0.00058753	410.87719399260703	32.682	0.47441	32.682	32.391	32.865	0					21	16	2	0	0	0	0.31899	1	6258	6258		7.4771	1.2852	1	110010			60370	2109	34680	34681	73615	73615					0.002453971604609251
YVAEYPQAEL	10	Unmodified	_YVAEYPQAEL_					0	0	0			REV__P3H4|p.F208Y|1|0.21|ENSG00000141696|chr17:41811027-41811027|A/T|missense_variant	REV__P3H4|p.F208Y|1|0.21|ENSG00000141696|chr17:41811027-41811027|A/T|missense_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.7876586914062	2	591.787504	1181.56045	0.47041	0.00027838	-0.37161	-0.00021991	0.098802	5.847E-05	591.7872160282488	71.515	1.0583	71.515	71.209	72.267	0					67	37	3	0	0	0	0.31867	1	18225	18225		18.146	2.8979	1	732350	+		60371	23283	34681	34682	73616	73616					-0.023063018303901117
YVAGFPDLQR	10	Unmodified	_YVAGFPDLQR_					0	0	0		ENSG00000187609|ENST00000340951|EXD3;nc|ENSG00000187609|Q8N9H8-4|EXD3	ENSG00000187609|ENST00000340951|EXD3	ENSG00000187609|ENST00000340951|EXD3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	583.2891235351562	2	583.303655	1164.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.868	1	36.955	36.455	37.455	0.08741								0	0	0	0.35754	1	7534	7534		11.64	3.4848	1				60372	7696	34682	34683	73617	73617					0.017045303632585274
YVAGNLNYKF	10	Unmodified	_YVAGNLNYKF_					0	0	0			REV__ENSG00000147145|ENST00000614823|LPAR4	REV__ENSG00000147145|ENST00000614823|LPAR4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.246337890625	2	594.806031	1187.59751	0.52327	0.00031125	0.087704	5.2167E-05	0.61098	0.00036341	594.805906692971	59.178	0.93507	59.163	58.977	59.912	-0.014267					71	32	4	0	0	0	0.31039	1	14590	14590		13.042	3.6593	1	1578400	+		60373	16374	34683	34684	73618	73618					0.011214145060193914
YVAGSVILNI	10	Unmodified	_YVAGSVILNI_					0	0	0		ENSG00000256537|ENST00000622602|SMIM10L1	ENSG00000256537|ENST00000622602|SMIM10L1	ENSG00000256537|ENST00000622602|SMIM10L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.73681640625	2	524.8055	1047.59645	0.58244	0.00030567	-0.30808	-0.00016168	0.27436	0.00014399	524.8052577789879	58.253	0.72585	58.253	57.986	58.712	0					60	24	3	0	0	0	0.14181	1	14122	14122		63.961	4.5921	1	1395900			60374	8628	34684	34685	73619	73619					0.07455200137110296
YVAGSVILNI	10	Unmodified	_YVAGSVILNI_					0	0	0		ENSG00000256537|ENST00000622602|SMIM10L1	ENSG00000256537|ENST00000622602|SMIM10L1	ENSG00000256537|ENST00000622602|SMIM10L1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7367553710938	2	524.8055	1047.59645	0.85178	0.00044702	-0.73669	-0.00038662	0.11509	6.04E-05	524.8050337592949	58.298	0.8754	58.281	57.928	58.803	-0.0172					64	31	3	0	0	0	0.11334	1	14119	14119		70.332	0	1	1544700			60375	8628	34684	34685	73620	73620					0.07455200137110296
YVAGYQEFL	9	Unmodified	_YVAGYQEFL_					0	0	0			REV__nc|ENSG00000149187|Q92879-5|CELF1	REV__nc|ENSG00000149187|Q92879-5|CELF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.8107299804688	2	545.266207	1088.51786	0.62735	0.00034207	-0.061304	-3.3427E-05	0.56605	0.00030865	545.2663668219056	72.793	0.60129	72.846	72.57	73.172	0.053833					28	21	2	0	0	0	0.25291	1	18612	18612		9.3474	0.75416	1	147940	+		60376	16453	34685	34686	73621	73621					-0.022856521679386788
YVALAHMHVPL	11	Unmodified	_YVALAHMHVPL_					0	0	0		ENSG00000141337|ENST00000621439|ARSG	ENSG00000141337|ENST00000621439|ARSG	ENSG00000141337|ENST00000621439|ARSG	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.841552734375	2	625.839351	1249.66415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.22	1	91.22	90.72	91.72	0								0	0	0	0.36287	1	24215	24215		3.5965	0.31518	1				60377	4367	34686	34687	73622	73622					0.049303267962841346
YVANVLVLRTL	11	Unmodified	_YVANVLVLRTL_					0	0	0			REV__ENST00000380520.5_1_6:2953326-2953380:-|nuORF	REV__ENST00000380520.5_1_6:2953326-2953380:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.2278137207031	3	420.927329	1259.76016	0.098631	4.1516E-05	-0.4093	-0.00017229	-0.31067	-0.00013077	420.92703781690903	44.929	0.13988	44.997	44.922	45.062	0.068573					5	4	2	0	0	0	0.32495	1	9985	9985		17.863	11.233	1	36145	+		60378	15240	34687	34688	73623	73623					0.14066797908026274
YVASHRGHF	9	Unmodified	_YVASHRGHF_					0	0	0		ENSG00000124227|ENST00000457363|ANKRD60	ENSG00000124227|ENST00000457363|ANKRD60	ENSG00000124227|ENST00000457363|ANKRD60	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.8189086914062	2	537.267407	1072.52026	0.36702	0.00019719	-2.9933	-0.0016082	-2.6263	-0.001411	537.2664950895004	34.293	0.34042	34.293	34.048	34.388	0					17	11	2	0	0	0	0.25417	1	6724	6724		8.5933	0.68312	1	84073			60379	3148	34688	34689	73624	73624					-0.013097589196377157
YVATDVTTV	9	Unmodified	_YVATDVTTV_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000033053	REV__CON__ENSEMBL:ENSBTAP00000033053	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.8160705566406	2	484.75039	967.486227	-0.49593	-0.0002404	0.071944	3.4875E-05	-0.42399	-0.00020553	484.7504914897091	60.091	0.29475	60.186	60.047	60.341	0.095089					15	10	2	0	0	0	0.16284	1	14704	14704		37.974	3.7867	1	230080	+	+	60380	13245	34689	34690	73625	73625					0.0011835507808655166
YVATDVTTV	9	Unmodified	_YVATDVTTV_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000033053	REV__CON__ENSEMBL:ENSBTAP00000033053	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.81597900390625	2	484.75039	967.486227	0.063354	3.0711E-05	-0.23517	-0.000114	-0.17182	-8.329E-05	484.75040007027724	60.111	0.32373	60.1	60.026	60.35	-0.011486					16	11	2	0	0	0	0.16284	1	14737	14737		37.974	3.7867	1	279050	+	+	60381	13245	34689	34690	73626	73626					0.0011835507808655166
YVATEEQLT	9	Unmodified	_YVATEEQLT_					0	0	0			REV__nc|ENSG00000100628|Q96Q27-1|ASB2	REV__nc|ENSG00000100628|Q96Q27-1|ASB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.7560424804688	2	527.258579	1052.50261	0.6573	0.00034657	-0.18226	-9.61E-05	0.47504	0.00025047	527.2582621979552	55.341	0.90305	55.411	55.055	55.958	0.070885					82	33	4	0	0	0	0.20626	1	13290	13290		22.736	0	1	1974000	+		60382	22913	34690	34691	73627	73627					-0.02154563755811978
YVAVDQFTL	9	Unmodified	_YVAVDQFTL_					0	0	0			REV__ENSG00000198169|ENST00000292562|ZNF251	REV__ENSG00000198169|ENST00000292562|ZNF251	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.2752685546875	2	528.274032	1054.53351	0.49711	0.00026261	0.89586	0.00047326	1.393	0.00073587	528.2743569869195	80.189	0.61339	80.162	79.89	80.504	-0.026825					54	20	4	0	0	0	0.12846	2	20863	20863;20881		34.102	5.0209	1	516150	+		60383	18804	34691	34692	73628;73629	73628					0.008426343491009902
YVAVDQFTL	9	Unmodified	_YVAVDQFTL_					0	0	0			REV__ENSG00000198169|ENST00000292562|ZNF251	REV__ENSG00000198169|ENST00000292562|ZNF251	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	528.274658203125	2	528.274032	1054.53351	0.49711	0.00026261	0.89586	0.00047326	1.393	0.00073587	528.2743569869195	80.189	0.61339	80.162	79.89	80.504	-0.026825					54	20	4	0	0	0	0.1939	1	20816	20816		30.637	5.2372	1	516150	+		60384	18804	34691	34692	73630	73630					0.008426343491009902
YVCEVSNR	8	Unmodified	_YVCEVSNR_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;nc|ENSG00000171587|O60469-2|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	485.750732421875	2	485.226559	968.438566	0.20683	0.00010036	-0.37943	-0.00018411	-0.1726	-8.3749E-05	485.2262906153637	24.862	0.60915	24.862	24.454	25.064	0					46	20	3	0	0	0	0.34408	1	3766	3766		2.3027	0	1	103850			60385	6559	34692	34693	73631	73631					-0.04691622393738726
YVCGTVLLNL	10	Unmodified	_YVCGTVLLNL_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	548.7893676757812	2	547.79936	1093.58417	0.51804	0.00028378	-1.7357	-0.00095079	-1.2176	-0.00066701	547.797572998752	76.854	1.0833	76.854	76.283	77.366	0					94	39	5	0	0	0	0.29092	1	19856	19856		21.537	2.28	1	1373400	+		60386	15095	34693	34694	73632	73632					0.04111840402447342
YVCGTVLLNL	10	Unmodified	_YVCGTVLLNL_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	548.789306640625	2	547.79936	1093.58417	0.4858	0.00026612	-2.1161	-0.0011592	-1.6303	-0.00089309	547.7976103908971	76.843	1.1081	76.896	76.32	77.428	0.053413					94	39	5	0	0	0	0.24105	1	19831	19831		27.629	2.2295	1	1489800	+		60387	15095	34693	34694	73633	73633					0.04111840402447342
YVDEAHSIF	9	Unmodified	_YVDEAHSIF_					0	0	0		ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	ENSG00000205038|ENST00000378402|PKHD1L1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.7719116210938	2	540.753464	1079.49238	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.942	1	72.942	72.442	73.442	0								0	0	0	0.21726	1	18619	18619		16.942	2.104	1				60388	8266	34694	34695	73634	73634					-0.0441912669039084
YVDEAPLPFPG	11	Unmodified	_YVDEAPLPFPG_					0	0	0		nc|ENSG00000133962|Q9H7T0-2|CATSPERB;ENSG00000133962|ENST00000256343|CATSPERB	nc|ENSG00000133962|Q9H7T0-2|CATSPERB	nc|ENSG00000133962|Q9H7T0-2|CATSPERB	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.3025512695312	2	602.797872	1203.58119	0.4832	0.00029127	2.3764	0.0014325	2.8596	0.0017237	602.7972689602049	63.615	1.6096	63.607	62.465	64.075	-0.0085526					126	56	3	0	0	0	0.37965	1	15638	15638		13.906	0.86358	1	933480			60389	3742	34695	34696	73635	73635					-0.012457114507469669
YVDEQIKYF	9	Unmodified	_YVDEQIKYF_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	REV__nc|ENSG00000109762|Q9H3E2-2|SNX25	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.3040161132812	2	602.797872	1203.58119	0.57608	0.00034726	2.8832	0.001738	3.4593	0.0020852	602.7971400113458	63.554	1.7611	63.554	62.369	64.13	0					133	64	3	0	0	0	0.18803	1	15821	15821		25.399	0.72543	1	810740	+		60390	14652	34696	34697	73636	73636					-0.012457114507242295
YVDLRTAKE	9	Unmodified	_YVDLRTAKE_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.2718505859375	2	547.795663	1093.57677	0.142	7.7787E-05	-1.2362	-0.00067718	-1.0942	-0.00059939	548.2947793638966	75.971	0.18201	75.971	75.794	75.976	0					10	6	2	0	0	0	0.2451	1	19523	19523		10.824	0	1	150880	+		60391	16423	34697	34698	73637	73637					0.03372824126358864
YVDNEIPLL	9	Unmodified	_YVDNEIPLL_					0	0	0			REV__ENSG00000136854|ENST00000373299|STXBP1	REV__ENSG00000136854|ENST00000373299|STXBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7852172851562	2	538.28714	1074.55973	0.41026	0.00022084	-3.5658	-0.0019194	-3.1555	-0.0016986	538.2858031369921	69.884	0.75837	69.884	69.566	70.325	0					41	27	2	0	0	0	0.1669	1	17743	17743		28.487	1.6032	1	539030	+		60392	15830	34698	34699	73638	73638					0.02542903520566142
YVDPAKPDGRS	11	Unmodified	_YVDPAKPDGRS_					0	0	0			REV__nc|ENSG00000142973|P13584|CYP4B1	REV__nc|ENSG00000142973|P13584|CYP4B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.7974853515625	2	602.801477	1203.5884	0.618	0.00037253	-3.6561	-0.0022039	-3.0381	-0.0018314	602.7970912046233	63.339	1.466	63.434	62.495	63.961	0.095722					111	52	3	0	0	0	0.39234	2	15750	15750;15763		12.241	2.1667	1	886140	+		60393	16141	34699	34700	73639;73640	73639					-0.005249788503078889
YVDPDKFTL	9	Unmodified	_YVDPDKFTL_					0	0	0			REV__ENSG00000115526|ENST00000264249|CHST10	REV__ENSG00000115526|ENST00000264249|CHST10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7594604492188	2	549.279315	1096.54408	0.9366	0.00051446	-3.1836	-0.0017487	-2.247	-0.0012342	549.7778412079181	78.349	0.43063	78.318	78.17	78.601	-0.030434					29	16	2	0	0	0	0.25989	1	20332	20332		14.838	0	1	262080	+		60394	14882	34700	34701	73641	73641					-0.0003338299648021348
YVDPSRAVE	9	Unmodified	_YVDPSRAVE_					0	0	0		ENST00000464435.1_1_21:17172090-17177592:+|nuORF;nc|ENSG00000155313|Q9UHP3|USP25;nc|ENSG00000155313|Q9UHP3-1|USP25;ENSG00000155313|ENST00000400183|USP25	ENST00000464435.1_1_21:17172090-17177592:+|nuORF	ENST00000464435.1_1_21:17172090-17177592:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.8074340820312	2	518.258914	1034.50327	0.46449	0.00024073	-1.6316	-0.00084558	-1.1671	-0.00060485	518.2596061651318	91.816	0.38205	91.817	91.717	92.099	0.00047302					28	21	2	0	0	0	0.24913	1	24436	24436		12.532	0	1	206130			60395	5169	34701	34702	73642	73642					-0.01259724316082611
YVDSHPITTY	10	Unmodified	_YVDSHPITTY_					0	0	0		nc|ENSG00000153029|Q95460-3|MR1;nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1;ENST00000486453.1_1_1:181003143-181018564:+|nuORF;nc|ENSG00000153029|Q95460-5|MR1;nc|ENSG00000153029|Q95460-4|MR1;ENST00000438435.6_1_1:181006220-181024398:+|nuORF;ENST00000367578.1_1_1:181003164-181019478:+|nuORF	nc|ENSG00000153029|Q95460-3|MR1	nc|ENSG00000153029|Q95460-3|MR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.2860107421875	2	598.285128	1194.5557	0.21482	0.00012852	1.5801	0.00094537	1.7949	0.0010739	598.2858519715056	66.898	0.9059	66.884	66.69	67.596	-0.013596					56	31	3	0	0	0	0.30079	1	16771	16771		20.454	0	1	550950			60396	5051	34702	34703	73643	73643					-0.03379185973153653
YVDSIKAVV	9	Unmodified	_YVDSIKAVV_					0	0	0			REV__SLC6A16|p.E475Gfs*13|1|0.05|ENSG00000063127|chr19:49294021-49294022|-/ACTC|frameshift_variant	REV__SLC6A16|p.E475Gfs*13|1|0.05|ENSG00000063127|chr19:49294021-49294022|-/ACTC|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	497.7962951660156	2	497.2844	992.554247	0.14553	7.2369E-05	0.067637	3.3635E-05	0.21317	0.000106	497.2843802464072	42.82	0.67249	42.911	42.691	43.363	0.091362					60	24	3	0	0	0	0.26612	1	9460	9460		13.906	0.86358	1	1386100	+		60397	13637	34703	34704	73644	73644					0.05767224728754172
YVDTKISL	8	Unmodified	_YVDTKISL_					0	0	0			REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	469.2386169433594	2	469.7633	937.512048	0.092231	4.3327E-05	0.43682	0.0002052	0.52905	0.00024853	469.76323378483823	66.846	0.53538	66.93	66.684	67.219	0.083824					26	18	2	0	0	0	0.32099	1	16804	16804		25.399	3.6527	1	135320	+		60398	14041	34704	34705	73645	73645					0.0407924932038668
YVDVDLLNF	9	Unmodified	_YVDVDLLNF_					0	0	0			REV__ENST00000375856.4_1_13:110407737-110407830:-|nuORF	REV__ENST00000375856.4_1_13:110407737-110407830:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.2789306640625	2	549.279315	1096.54408	0.14875	8.1707E-05	-0.15049	-8.2659E-05	-0.0017337	-9.5226E-07	549.2791972979626	73.716	0.5616	73.716	73.468	74.029	0					33	19	2	0	0	0	0.068501	1	18900	18900		46.021	3.9264	1	544000	+		60399	20481	34705	34706	73646	73646					-0.0003338299648021348
YVDVDLLNF	9	Unmodified	_YVDVDLLNF_					0	0	0			REV__ENST00000375856.4_1_13:110407737-110407830:-|nuORF	REV__ENST00000375856.4_1_13:110407737-110407830:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.2796630859375	2	549.279315	1096.54408	0.36923	0.00020281	0.04658	2.5585E-05	0.4158	0.00022839	549.2793817542922	73.822	0.43926	73.791	73.528	73.967	-0.030663					30	15	2	0	0	0	0.044952	1	18856	18856		54.774	3.1437	1	579510	+		60400	20481	34705	34706	73647	73647					-0.0003338299648021348
YVEEDGSKNDD	11	Unmodified	_YVEEDGSKNDD_					0	0	0		ENST00000519391.1_1_8:118542904-118552214:+|nuORF;MED30|p.N171Mfs*6|1|0.47|ENSG00000164758|chr8:117539951-117539951|A/-|frameshift_variant;ENSG00000164758|ENST00000297347|MED30	ENST00000519391.1_1_8:118542904-118552214:+|nuORF	ENST00000519391.1_1_8:118542904-118552214:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	424.20672607421875	3	424.173845	1269.49971	-0.77696	-0.00032957	-1.0742	-0.00045566	-1.8512	-0.00078523	424.17352862891795	35.226	0.46756	35.303	35.06	35.528	0.077377					41	16	4	0	0	0	0.33326	1	6969	6969		1.4551	1.0006	1	341200			60401	5876	34706	34707	73648	73648					-0.12426483671265487
YVEGKDTLF	9	Unmodified	_YVEGKDTLF_					0	0	0			REV__ENST00000420642.1_7:74765936-74789271:+|nuORF	REV__ENST00000420642.1_7:74765936-74789271:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.2573852539062	2	536.27149	1070.52843	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.73	1	80.703	80.203	81.203	-0.026825								0	0	0	0.18374	1	20979	20979		26.884	6.0124	1		+		60402	19326	34707	34708	73649	73649					-0.004016695135305781
YVEINIFF	8	Unmodified	_YVEINIFF_					0	0	0		ENST00000495756.5_1_3:112255248-112280627:-|nuORF	ENST00000495756.5_1_3:112255248-112280627:-|nuORF	ENST00000495756.5_1_3:112255248-112280627:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3035888671875	2	522.773668	1043.53278	0.20297	0.00010611	-3.0209	-0.0015792	-2.8179	-0.0014731	522.7719208266662	81.769	0.53607	81.838	81.482	82.018	0.068993					38	23	2	0	0	0	0.3366	1	21288	21288		18.135	2.2878	1	123560			60403	11222	34708	34709	73650	73650					0.012758397000425248
YVEKLPYIV	9	Unmodified	_YVEKLPYIV_					0	0	0			REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	562.3231811523438	2	562.323525	1122.6325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.87	1	118.84	118.34	119.34	-0.024147								0	0	0	0.26704	1	30708	30708		0.6015	0	1		+		60404	15054	34709	34710	73651	73651					0.0760865731397189
YVEPPEDSF	9	Unmodified	_YVEPPEDSF_					0	0	0			REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7378540039062	2	541.73748	1081.46041	0.55811	0.00030235	0.96185	0.00052107	1.52	0.00082342	541.7378586452353	56.869	0.7086	56.948	56.603	57.311	0.078674					61	26	4	0	0	0	0.26879	1	13721	13721		13.508	2.3934	1	637680	+		60405	16163	34710	34711	73652	73652					-0.07706539164178139
YVEPPEDSF	9	Unmodified	_YVEPPEDSF_					0	0	0			REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	REV__nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	541.73748	1081.46041	0.58879	0.00031897	1.0385	0.00056262	1.6273	0.00088159	541.737991613095	56.965	0.66397	56.965	56.66	57.323	0	0.0014125	0.00013313	NaN	13.508	60	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	636820	+		60406	16163	34710	34711							-0.07706539164178139
YVEVYNRI	8	Unmodified	_YVEVYNRI_					0	0	0			REV__ENSG00000178409|ENST00000369042|BEND3	REV__ENSG00000178409|ENST00000369042|BEND3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.765869140625	2	528.279649	1054.54475	0.4326	0.00022854	0.44165	0.00023331	0.87425	0.00046185	528.2806149463133	40.794	0.54915	40.794	40.576	41.125	0					40	19	3	0	0	0	0.34092	1	8812	8812		13.508	2.684	1	269730	+		60407	18035	34711	34712	73653	73653					0.0196545644323578
YVEYHIVE	8	Unmodified	_YVEYHIVE_					0	0	0			REV__ENST00000520277.1_1_8:75896934-75898275:+|nuORF	REV__ENST00000520277.1_1_8:75896934-75898275:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.2764282226562	2	526.258382	1050.50221	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.773	1	33.773	33.273	34.273	0								0	0	0	0.33941	1	6588	6588		19.439	5.9311	1		+		60408	19606	34712	34713	73654	73654					-0.021019386850184674
YVFEGKMLE	9	Unmodified	_YVFEGKMLE_					0	0	0		nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1	nc|ENSG00000100241|O95248|SBF1	nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	559.2911987304688	2	558.275718	1114.53688	0.43203	0.00024119	0.93561	0.00052233	1.3676	0.00076352	558.2751760034917	66.244	0.62714	66.328	66.083	66.71	0.083832					47	22	4	0	0	0	0.18803	1	16647	16647		25.399	0	1	188300			60409	1550	34713	34714	73655	73655					-0.015804388685182857
YVFFVFNQQ	9	Unmodified	_YVFFVFNQQ_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.828125	2	596.295299	1190.57605	0.53732	0.0003204	-2.7214	-0.0016227	-2.184	-0.0013023	596.7941250736375	39.07	0.11169	39.169	39.1	39.212	0.099407					5	3	2	0	0	0	0.25417	1	8198	8198		8.5933	0.68312	1	135720			60410	7882	34714	34715	73656	73656					-0.01161970522662159
YVFGPKLLDK	10	Unmodified	_YVFGPKLLDK_					0	0	0		ENST00000506123.5_1_5:54461313-54461532:+|nuORF	ENST00000506123.5_1_5:54461313-54461532:+|nuORF	ENST00000506123.5_1_5:54461313-54461532:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.80322265625	2	590.342249	1178.66995	0.59924	0.00035376	-0.34563	-0.00020404	0.25361	0.00014972	590.3419764660191	51.196	0.66928	51.196	50.922	51.592	0					46	24	3	0	0	0	0.31847	1	12019	12019		6.7232	3.7279	1	541140			60411	11323	34715	34716	73657	73657					0.08775748579591891
YVFIHPWN	8	Unmodified	_YVFIHPWN_					0	0	0			REV__MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|60|2|sense	REV__MER4-int_dup1854|chrY:4104844-4107652:+|1.373527874812219|0.2382143427425708|2.53|399.0|60|2|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.3187866210938	2	538.271627	1074.5287	0.65325	0.00035163	4.0871	0.0022	4.7403	0.0025516	538.7743667240079	72.737	0.25154	72.708	72.566	72.818	-0.029297					13	8	3	0	0	0	0.3225	1	18569	18569		22.453	6.6844	1	203750	+		60412	22859	34716	34717	73658	73658					-0.005582050029943275
YVFKRGDEDM	10	Unmodified	_YVFKRGDEDM_					0	0	0			REV__ENSG00000134504|ENST00000580059|KCTD1	REV__ENSG00000134504|ENST00000580059|KCTD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.860595703125	2	630.289888	1258.56522	0.62006	0.00039082	0.45434	0.00028637	1.0744	0.00067718	630.2900070876218	83.73	1.4393	83.73	82.534	83.973	0					82	54	3	0	0	0	0.31691	1	21978	21978		9.3831	2.66	1	419550	+		60413	15679	34717	34718	73659	73659					-0.05371740959276394
YVFKRGDEDM	10	Unmodified	_YVFKRGDEDM_					0	0	0			REV__ENSG00000134504|ENST00000580059|KCTD1	REV__ENSG00000134504|ENST00000580059|KCTD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	630.289888	1258.56522	0.40452	0.00025496	0.58014	0.00036565	0.98466	0.00062062	630.2900404607068	83.61	1.0774	83.687	82.848	83.925	0.077095	-0.0296	0.00015529	NaN	13.906	75	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	425070	+		60414	15679	34717	34718							-0.05371740959276394
YVFLLLRK	8	Unmodified	_YVFLLLRK_					0	0	0			REV__ENST00000426391.6_2_19:52598920-52598998:-|nuORF	REV__ENST00000426391.6_2_19:52598920-52598998:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.3255004882812	2	526.33677	1050.65899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.34	1	106.34	105.84	106.84	0								0	0	0	0.37664	1	28109	28109		2.5775	0	1		+		60415	20903	34718	34719	73660	73660					0.13568390996010748
YVFLVQSIF	9	Unmodified	_YVFLVQSIF_					0	0	0		nc|ENSG00000090612|Q14587-4|ZNF268;nc|ENSG00000090612|Q14587-6|ZNF268	nc|ENSG00000090612|Q14587-4|ZNF268	nc|ENSG00000090612|Q14587-4|ZNF268	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.8051147460938	2	558.310418	1114.60628	0.49111	0.00027419	-0.74171	-0.0004141	-0.25059	-0.00013991	558.3100600820258	86.131	0.55284	86.131	85.876	86.429	0					44	20	3	0	0	0	0.24913	1	22741	22741		12.532	3.1841	1	188850			60416	12604	34719	34720	73661	73661					0.05356388142513424
YVFQNTIIF	9	Unmodified	_YVFQNTIIF_					0	0	0		ENST00000531325.5_1_1:85403252-85462600:-|nuORF;ENSG00000153898|ENST00000370608|MCOLN2;nc|ENSG00000153898|Q8IZK6-2|MCOLN2	ENST00000531325.5_1_1:85403252-85462600:-|nuORF	ENST00000531325.5_1_1:85403252-85462600:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.7869262695312	2	572.8055	1143.59645	0.21249	0.00012172	1.6538	0.00094729	1.8663	0.001069	572.8059576015181	80.429	0.76043	80.429	79.897	80.657	0					36	27	2	0	0	0	0.25526	1	20880	20880		1.8442	0	1	141000			60417	5091	34720	34721	73662	73662					0.030392001371410515
YVFQNTIIF	9	Unmodified	_YVFQNTIIF_					0	0	0		ENST00000531325.5_1_1:85403252-85462600:-|nuORF;ENSG00000153898|ENST00000370608|MCOLN2;nc|ENSG00000153898|Q8IZK6-2|MCOLN2	ENST00000531325.5_1_1:85403252-85462600:-|nuORF	ENST00000531325.5_1_1:85403252-85462600:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	572.8055	1143.59645	0.24837	0.00014227	-0.64201	-0.00036775	-0.39363	-0.00022548	572.8053302498032	80.747	0.49089	80.72	80.552	81.043	-0.026825	0.14533	-0.00032052	NaN	1.8442	22	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177300			60418	5091	34720	34721							0.030392001371410515
YVFQRRFV	8	Unmodified	_YVFQRRFV_					0	0	0		ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2853393554688	2	557.811451	1113.60835	0.40415	0.00022544	2.083	0.0011619	2.4872	0.0013874	558.3137585655378	88.731	0.40321	88.821	88.618	89.021	0.089203					23	16	2	0	0	0	0.34185	1	23491	23491		10.183	0.83596	1	69976			60419	2937	34721	34722	73663	73663					0.05608861670998522
YVFRLAARSRG	11	Unmodified	_YVFRLAARSRG_					0	0	0		nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS	nc|ENSG00000105426|Q13332-6|PTPRS	nc|ENSG00000105426|Q13332-6|PTPRS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	432.5958251953125	3	432.582556	1294.72584	0.060967	2.6373E-05	2.0408	0.0008828	2.1017	0.00090917	432.5834879934686	41.821	0.54942	41.911	41.807	42.357	0.090248					32	19	2	0	0	0	0.46392	1	9142	9142		2.8433	0.59056	1	933320			60420	1978	34722	34723	73664	73664					0.09026394539750981
YVFTADQVI	9	Unmodified	_YVFTADQVI_					0	0	0			REV__ENST00000543561.1_1_16:67039172-67039418:+|nuORF	REV__ENST00000543561.1_1_16:67039172-67039418:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	528.8140258789062	2	528.274032	1054.53351	0.94602	0.00049976	3.5094	0.0018539	4.4554	0.0023537	528.2767180274208	78.22	0.34702	78.22	77.955	78.302	0					17	12	2	0	0	0	0.2451	1	20213	20213		15.847	1.0089	1	81904	+		60421	17736	34723	34724	73665	73665					0.008426343491009902
YVFTAGDLLP	10	Unmodified	_YVFTAGDLLP_					0	0	0		ENSG00000213906|ENST00000533293|LTB4R2	ENSG00000213906|ENST00000533293|LTB4R2	ENSG00000213906|ENST00000533293|LTB4R2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.3052368164062	2	548.289682	1094.56481	0.68745	0.00037692	-1.5377	-0.00084308	-0.8502	-0.00046616	548.2887641100086	65.865	0.5181	65.865	65.634	66.152	0					39	18	3	0	0	0	0.22916	1	16432	16432		29.082	0.59474	1	798300			60422	8368	34724	34725	73666	73666					0.02131207383195033
YVFVPKESF	9	Unmodified	_YVFVPKESF_					0	0	0			REV__ENST00000532451.1_1_11:121323091-121416136:+|nuORF	REV__ENST00000532451.1_1_11:121323091-121416136:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	558.2911376953125	2	558.292225	1114.5699	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.64	1	88.64	88.14	89.14	0								0	0	0	0.24715	1	23424	23424		7.2892	1.0834	1		+		60423	15875	34725	34726	73667	73667					0.017195112458011863
YVFVRDPAKL	10	Unmodified	_YVFVRDPAKL_					0	0	0		ENSG00000157404|ENST00000288135|KIT;nc|ENSG00000157404|P10721-2|KIT	ENSG00000157404|ENST00000288135|KIT	ENSG00000157404|ENST00000288135|KIT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.23187255859375	3	403.232641	1206.67609	0.095171	3.8376E-05	0.84837	0.00034209	0.94354	0.00038047	403.2317776551287	29.187	1.5421	29.187	28.791	30.333	0					88	55	3	0	0	0	0.32033	1	5329	5329		2.086	0	1	263910			60424	5304	34726	34727	73668	73668					0.08102266811124537
YVFVRKPTHV	10	Unmodified	_YVFVRKPTHV_					0	0	0			REV__ENST00000325089.7_1_13:88324908-88325049:+|nuORF	REV__ENST00000325089.7_1_13:88324908-88325049:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	415.9085693359375	3	415.908269	1244.70298	0.49492	0.00020584	-0.72009	-0.00029949	-0.22517	-9.3652E-05	415.9079258741227	33.51	1.8274	33.576	32.489	34.317	0.06636					173	65	3	0	0	0	0.35961	1	6563	6563		10.899	1.6552	1	1278500	+		60425	19991	34727	34728	73669	73669					0.09041375422316378
YVFYEQYLTI	10	Unmodified	_YVFYEQYLTI_					0	0	0		ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000588867.1_1_18:21114346-21115663:-|nuORF	ENSG00000141458|ENST00000269228|NPC1	ENSG00000141458|ENST00000269228|NPC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	447.24560546875	3	446.892062	1337.65436	-0.67918	-0.00030352	-0.10927	-4.8831E-05	-0.78845	-0.00035235	446.89195265655246	35.072	1.0529	35.147	34.814	35.867	0.075306					115	37	5	0	0	0	0.31942	1	7145	7145		6.1918	0	1	1852900			60426	4383	34728	34729	73670	73670					-0.0009658272811066126
YVFYLLYP	8	Unmodified	_YVFYLLYP_					0	0	0		ENSG00000169562|ENST00000361726|GJB1	ENSG00000169562|ENST00000361726|GJB1	ENSG00000169562|ENST00000361726|GJB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8634033203125	2	539.286411	1076.55827	0.67274	0.0003628	-0.9712	-0.00052375	-0.29846	-0.00016095	539.2858056850919	76.579	0.58633	76.548	76.29	76.877	-0.031487					30	21	2	0	0	0	0.31651	1	19689	19689		17.087	0	1	153310			60427	6363	34729	34730	73671	73671					0.02305314222439847
YVGAQLCTLS	10	Unmodified	_YVGAQLCTLS_					0	0	0			REV__ENST00000320982.3_1_22:30886116-30899718:-|nuORF	REV__ENST00000320982.3_1_22:30886116-30899718:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	527.7655029296875	2	527.765517	1053.51648	0.53854	0.00028422	-0.42933	-0.00022658	0.10921	5.7637E-05	527.7652290386048	40.767	0.57869	40.859	40.611	41.19	0.09267					45	21	3	0	0	0	0.34325	1	8756	8756		13.906	2.2658	1	682990	+		60428	15626	34730	34731	73672	73672					-0.008136095283589384
YVGATTNIHP	10	Unmodified	_YVGATTNIHP_					0	0	0		nc|ENSG00000101333|Q15147-2|PLCB4;ENST00000492632.5_1_20:9288449-9449247:+|nuORF;ENST00000464199.5_1_20:9351789-9459633:+|nuORF;nc|ENSG00000101333|Q15147|PLCB4;nc|ENSG00000101333|Q15147-5|PLCB4;nc|ENSG00000101333|Q15147-4|PLCB4;ENSG00000101333|ENST00000378473|PLCB4	nc|ENSG00000101333|Q15147-2|PLCB4	nc|ENSG00000101333|Q15147-2|PLCB4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2965087890625	2	536.774731	1071.53491	0.43514	0.00023357	-1.3418	-0.00072024	-0.90665	-0.00048667	536.7739240225785	30.173	0.30611	30.201	30.048	30.354	0.027948					14	10	2	0	0	0	0.31581	1	5527	5527		11.495	1.4208	1	88048			60429	1683	34731	34732	73673	73673					0.0020026843783398363
YVGETLQPK	9	Unmodified	_YVGETLQPK_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.2884521484375	2	517.779482	1033.54441	0.39426	0.00020414	1.6303	0.00084412	2.0245	0.0010483	518.279507667212	87.402	0.24279	87.396	87.304	87.547	-0.0056229					21	12	2	0	0	0	0.25314	1	23075	23075		15.847	3.3156	1	53925			60430	6111	34732	34733	73674	73674					0.028980367233543802
YVGPSVVKSL	10	Unmodified	_YVGPSVVKSL_					0	0	0			REV__ENST00000468249.1_1_22:50968911-50969740:-|nuORF	REV__ENST00000468249.1_1_22:50968911-50969740:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	524.7879028320312	2	524.8055	1047.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.942	1	58.928	58.428	59.428	-0.014267								0	0	0	0.30188	1	14315	14315		27.629	0	1		+		60431	21319	34733	34734	73675	73675					0.07455200137133033
YVGSNLLII	9	Unmodified	_YVGSNLLII_					0	0	0			REV__nc|ENSG00000091831|P03372-3|ESR1	REV__nc|ENSG00000091831|P03372-3|ESR1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2947082519531	2	496.294768	990.574983	0.61246	0.00030396	-0.87439	-0.00043396	-0.26193	-0.00013	496.2941660047113	78.988	0.53935	78.988	78.776	79.315	0					39	22	2	0	0	0	0.063853	1	20470	20470		47.749	0	1	180110	+		60432	14070	34734	34735	73676	73676					0.07931815108440787
YVGSNLLII	9	Unmodified	_YVGSNLLII_					0	0	0			REV__nc|ENSG00000091831|P03372-3|ESR1	REV__nc|ENSG00000091831|P03372-3|ESR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.2659912109375	2	496.294768	990.574983	0.61246	0.00030396	-0.87439	-0.00043396	-0.26193	-0.00013	496.2941660047113	78.988	0.53935	78.988	78.776	79.315	0					39	22	2	0	0	0	0.2451	1	20547	20547		10.824	0	1	180110	+		60433	14070	34734	34735	73677	73677					0.07931815108440787
YVGSNLLII	9	Unmodified	_YVGSNLLII_					0	0	0			REV__nc|ENSG00000091831|P03372-3|ESR1	REV__nc|ENSG00000091831|P03372-3|ESR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.2947998046875	2	496.294768	990.574983	0.63518	0.00031523	-0.57915	-0.00028743	0.056023	2.7804E-05	496.2943318993772	79.075	0.52444	79.046	78.824	79.348	-0.028923					36	22	2	0	0	0	0.1854	1	20481	20481		32.305	0	1	193730	+		60434	14070	34734	34735	73678	73678					0.07931815108440787
YVGVRMDRQSA	11	Unmodified	_YVGVRMDRQSA_					0	0	0			REV__ENSG00000023839|ENST00000647814|ABCC2	REV__ENSG00000023839|ENST00000647814|ABCC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	428.25665283203125	3	427.883795	1280.62955	0.070603	3.021E-05	-1.8861	-0.00080705	-1.8155	-0.00077684	427.8824883606252	85.735	0.24229	85.82	85.696	85.939	0.084251					9	8	2	0	0	0	0.33296	1	22516	22516		2.6312	1.4164	1	82611	+		60435	13473	34735	34736	73679	73679					0.0004645891754080367
YVGYGNRPP	9	Unmodified	_YVGYGNRPP_					0	0	0			REV__nc|ENSG00000116151|Q5T089-2|MORN1	REV__nc|ENSG00000116151|Q5T089-2|MORN1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.73895263671875	2	511.756341	1021.49813	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.575	1	69.575	69.075	70.075	0								0	0	0	0.24311	1	17589	17589		8.5933	1.304	1		+		60436	14914	34736	34737	73680	73680					-0.011759833880546466
YVHIPMLF	8	Unmodified	_YVHIPMLF_					0	0	0			REV__nc|ENSG00000071967|Q53TN4-3|CYBRD1	REV__nc|ENSG00000071967|Q53TN4-3|CYBRD1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	510.2811584472656	2	510.272781	1018.53101	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.37	1	90.371	89.871	90.871	0.0003891								0	0	0	0.35779	1	23939	23939		11.114	2.5212	1		+		60437	13749	34737	34738	73681	73681					0.02248507410433831
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(130)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	525.2474975585938	2	525.247295	1048.48004	0.53938	0.00028331	0.019246	1.0109E-05	0.55863	0.00029342	525.2473003683209	31.687	2.1227	31.687	31.361	33.484	0					169	75	4	0	0	0	0.004968	4	6013	5966;6013;6055;6105		127.54	74.844	1	7932000			60438	4254	34738	34739	73682;73683;73684;73685	73683		543			-0.04226441634409639
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(130)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.24755859375	2	525.247295	1048.48004	0.49349	0.0002592	0.0040281	2.1158E-06	0.49752	0.00026132	525.2472896957278	31.792	1.6508	31.834	31.399	33.05	0.042364					127	58	4	0	0	0	0.004968	4	6005	5901;5960;6005;6059		127.54	74.844	1	9475900			60439	4254	34738	34739	73686;73687;73688;73689	73688		543			-0.04226441634409639
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(130)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2476196289062	2	525.247295	1048.48004	0.50226	0.00026381	0.13439	7.0587E-05	0.63665	0.0003344	525.2473520896748	31.547	0.49934	31.588	31.334	31.833	0.040989					51	17	4	0	0	0	0.004968	1	5926	5926		127.54	74.844	1	8730200			60440	4254	34738	34739	73690	73690		543			-0.04226441634409639
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(130)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	525.2476196289062	2	525.247295	1048.48004	0.54243	0.00028491	0.076344	4.0099E-05	0.61877	0.00032501	525.2472557628435	31.909	1.4709	31.95	31.748	33.219	0.040991					125	52	4	0	0	0	0.004968	3	5975	5975;6020;6063		127.54	74.844	1	7641300			60441	4254	34738	34739	73691;73692;73693	73691		543			-0.04226441634409639
YVHNELANM	9	Unmodified	_YVHNELANM_					0	0	0		nc|ENSG00000074603|Q6V1X1-2|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8;nc|ENSG00000074603|Q6V1X1-6|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-2|DPP8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3170776367188	2	545.752941	1089.49133	0.58854	0.0003212	-2.8553	-0.0015583	-2.2668	-0.0012371	546.2549855236965	81.282	0.19318	81.258	81.181	81.374	-0.02404					10	7	2	0	0	0	0.25202	1	21148	21148		6.7232	0	1	77399			60442	1023	34739	34740	73694	73694					-0.04983664330961801
YVHNGCPILDE	11	Unmodified	_YVHNGCPILDE_					0	0	0		FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant;ENSG00000164946|ENST00000380880|FREM1	FREM1|p.P1857Lfs*47|1|0.5|ENSG00000164946|chr9:14748629-14748629|A/-|frameshift_variant;ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.2901000976562	2	630.289888	1258.56522	0.45716	0.00028814	0.45486	0.00028669	0.91202	0.00057484	630.2899400292627	84.303	0.87418	84.38	83.979	84.853	0.077095					69	34	3	0	0	0	0.41896	1	22162	22162		8.7454	2.0222	1	352580			60443	12345;5905	34740	34741	73695	73695					-0.05371740959253657
YVHQEHTDKG	10	Unmodified	_YVHQEHTDKG_					0	0	0		nc|ENSG00000111846|Q8N0V5-3|GCNT2	nc|ENSG00000111846|Q8N0V5-3|GCNT2	nc|ENSG00000111846|Q8N0V5-3|GCNT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	607.2843017578125	2	607.283451	1212.55235	0.46479	0.00028226	-0.032898	-1.9979E-05	0.43189	0.00026228	607.2832470232872	19.882	0.51789	19.826	19.516	20.034	-0.055693					26	18	2	0	0	0	0.41892	1	2416	2416		0	0	1	39423			60444	12651	34741	34742	73696	73696					-0.04542436027168151
YVHSGVAF	8	Unmodified	_YVHSGVAF_					0	0	0			REV__ENSG00000154330|ENST00000396396|PGM5	REV__ENSG00000154330|ENST00000396396|PGM5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.58209228515625	2	440.221603	878.428653	-0.11052	-4.8652E-05	-4.0371	-0.0017772	-4.1476	-0.0018259	440.21957938372867	19.207	0.19847	19.207	19.095	19.294	0					8	6	2	0	0	0	0.34297	1	2171	2171		6.3541	0.59368	1	21303	+		60445	16661	34742	34743	73697	73697					-0.015424423368017415
YVHVNQYDI	9	Unmodified	_YVHVNQYDI_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	576.3193359375	2	575.780013	1149.54547	0.50956	0.0002934	0.3276	0.00018863	0.83717	0.00048202	575.7797313890252	45.564	0.71265	45.564	45.175	45.888	0					57	25	3	0	0	0	0.20167	1	10136	10136		17.113	8.9574	1	661740			60446	3408	34743	34744	73698	73698					-0.023317489077271603
YVIESARQRP	10	Unmodified	_YVIESARQRP_					0	0	0		nc|ENSG00000102710|Q8NEM7-2|SUPT20H;nc|ENSG00000102710|Q8NEM7-3|SUPT20H;ENST00000470359.2_1_13:37621536-37625627:-|nuORF;ENSG00000102710|ENST00000350612|SUPT20H	nc|ENSG00000102710|Q8NEM7-2|SUPT20H	nc|ENSG00000102710|Q8NEM7-2|SUPT20H	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	609.8336791992188	2	609.833111	1217.65167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.183	1	60.172	59.672	60.672	-0.011486								0	0	0	0.37581	1	14695	14695		3.9444	0.3479	1				60447	12628	34744	34745	73699	73699					0.05155006657605554
YVIFSEGVF	9	Unmodified	_YVIFSEGVF_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.76171875	2	530.771126	1059.5277	0.46048	0.00024441	0.74327	0.00039451	1.2037	0.00063892	530.7713907905317	89.154	0.56525	89.245	88.918	89.483	0.090569					44	27	3	0	0	0	0.21303	1	23616	23616		21.747	0	1	189220	+		60448	18238	34745	34746	73700	73700					0.00031535837410956447
YVIGHTELSL	10	Unmodified	_YVIGHTELSL_					0	0	0			REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	566.3078002929688	2	566.305864	1130.59717	0.3719	0.00021061	0.42042	0.00023809	0.79232	0.0004487	566.3062441630311	58.383	0.46564	58.383	58.159	58.624	0					28	15	2	0	0	0	0.31867	1	14198	14198		18.146	0	1	402000	+		60449	22118	34746	34747	73701	73701					0.03709994786186144
YVIGHTELSL	10	Unmodified	_YVIGHTELSL_					0	0	0			REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	566.3058471679688	2	566.305864	1130.59717	0.63953	0.00036217	-1.4548	-0.00082384	-0.81523	-0.00046167	566.3058708572078	58.506	0.49174	58.491	58.221	58.712	-0.014267					41	17	3	0	0	0	0.1715	1	14193	14193		36.127	3.3413	1	322360	+		60450	22118	34746	34747	73702	73702					0.03709994786186144
YVIGHTELSL	10	Unmodified	_YVIGHTELSL_					0	0	0			REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	566.305864	1130.59717	0.3719	0.00021061	0.42042	0.00023809	0.79232	0.0004487	566.3062441630311	58.383	0.46564	58.383	58.159	58.624	0	-0.0014805	0.00031173	NaN	36.127	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402000	+		60451	22118	34746	34747							0.03709994786186144
YVIGHTELSL	10	Unmodified	_YVIGHTELSL_					0	0	0			REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	566.305864	1130.59717	0.41011	0.00023225	0.52828	0.00029917	0.93839	0.00053142	566.3063313560065	58.194	0.55366	58.28	57.97	58.524	0.085617	-0.10506	0.00043389	NaN	36.127	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299610	+		60452	22118	34746	34747							0.03709994786186144
YVIGHTELSL	10	Unmodified	_YVIGHTELSL_					0	0	0			REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	REV__ENST00000540779.1_1_12:122359430-122370014:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	566.305864	1130.59717	0.63953	0.00036217	-1.4548	-0.00082384	-0.81523	-0.00046167	566.3058708572078	58.506	0.49174	58.491	58.221	58.712	-0.014267	0.10654	-0.0018121	NaN	36.127	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322360	+		60453	22118	34746	34747							0.03709994786186144
YVILERTKA	9	Unmodified	_YVILERTKA_					0	0	0			REV__ENST00000475218.2_1_13:115052028-115057105:+|nuORF	REV__ENST00000475218.2_1_13:115052028-115057105:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	546.3323974609375	2	546.824224	1091.63389	0.28882	0.00015793	-1.1965	-0.00065429	-0.90771	-0.00049636	546.8235488819406	30.452	0.39512	30.479	30.309	30.704	0.027157					31	13	3	0	0	0	0.25417	1	5577	5577		8.5933	0	1	155830	+		60454	21405	34747	34748	73703	73703					0.09174291402746348
YVILMIFF	8	Unmodified	_YVILMIFF_					0	0	0			REV__ENSG00000265808|ENST00000578049|SEC22B	REV__ENSG00000265808|ENST00000578049|SEC22B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	523.3035888671875	2	523.293182	1044.57181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.713	1	81.782	81.282	82.282	0.068993								0	0	0	0.35779	1	21288	21288		11.114	0	1		+		60455	19297	34748	34749	73704	73704					0.05130848730050275
YVIMNEQF	8	Unmodified	_YVIMNEQF_					0	0	0			REV__nc|ENSG00000008130|O95544-2|NADK	REV__nc|ENSG00000008130|O95544-2|NADK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.7821044921875	2	522.24696	1042.47937	0.37894	0.0001979	0.2435	0.00012717	0.62243	0.00032506	522.2451098382809	67.796	0.11115	67.78	67.7	67.811	-0.016304					7	3	3	0	0	0	0.33995	1	17016	17016		15.768	0	1	93209	+		60456	22875	34749	34750	73705	73705					-0.040172810741296416
YVINISLIL	9	Unmodified	_YVINISLIL_					0	0	0		nc|ENSG00000214694|A8MVX0|ARHGEF33;ENSG00000214694|ENST00000409978|ARHGEF33	nc|ENSG00000214694|A8MVX0|ARHGEF33	nc|ENSG00000214694|A8MVX0|ARHGEF33	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.6868896484375	2	524.326068	1046.63758	0.49715	0.00026067	-0.59326	-0.00031106	-0.096111	-5.0394E-05	524.325593441224	81.582	0.68947	81.558	81.294	81.984	-0.02404					64	29	3	0	0	0	0.23784	1	21338	21338		19.257	0	1	615640			60457	8388	34750	34751	73706	73706					0.116129611766155
YVIPRNLT	8	Unmodified	_YVIPRNLT_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	REV__nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	488.77679443359375	2	488.284734	974.554916	0.62921	0.00030723	-0.1775	-8.6669E-05	0.45171	0.00022056	488.2845476992545	36.163	0.61974	36.25	36.034	36.654	0.086246					29	21	2	0	0	0	0.33993	1	7397	7397		16.942	11.182	1	214970	+		60458	15947	34751	34752	73707	73707					0.06662064168460802
YVIRSQIHDA	10	Unmodified	_YVIRSQIHDA_					0	0	0			REV__nc|ENSG00000114268|Q16877-2|PFKFB4	REV__nc|ENSG00000114268|Q16877-2|PFKFB4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.8064575195312	2	601.319837	1200.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.409	1	87.496	86.996	87.996	0.08709								0	0	0	0.36126	1	23040	23040		10.074	5.7447	1		+		60459	14827	34752	34753	73708	73708					0.032833177662723756
YVISDNIFSF	10	Unmodified	_YVISDNIFSF_					0	0	0			REV__nc|ENSG00000177398|Q5DID0-3|UMODL1	REV__nc|ENSG00000177398|Q5DID0-3|UMODL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.7977294921875	2	602.797872	1203.58119	0.4832	0.00029127	2.3764	0.0014325	2.8596	0.0017237	602.7972689602049	63.615	1.6096	63.607	62.465	64.075	-0.0085526					126	56	3	0	0	0	0.30958	1	15758	15758		19.257	5.3509	1	933480	+		60460	17986	34753	34754	73709	73709					-0.012457114507469669
YVISLSVIT	9	Unmodified	_YVISLSVIT_					0	0	0			REV__ENSG00000088386|ENST00000376503|SLC15A1	REV__ENSG00000088386|ENST00000376503|SLC15A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	498.30975341796875	2	497.794601	993.574648	0.50531	0.00025154	-2.018	-0.0010046	-1.5127	-0.00075301	497.7945278606866	82.939	0.3082	82.918	82.719	83.027	-0.020584					17	11	2	0	0	0	0.1669	1	21658	21658		28.487	0	1	75143	+		60461	14007	34754	34755	73710	73710					0.07760395388561392
YVISLSVIT	9	Unmodified	_YVISLSVIT_					0	0	0			REV__ENSG00000088386|ENST00000376503|SLC15A1	REV__ENSG00000088386|ENST00000376503|SLC15A1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	497.794601	993.574648	0.50756	0.00025266	-2.2591	-0.0011246	-1.7515	-0.0008719	497.79457743043343	82.782	0.3807	82.855	82.752	83.133	0.073097	-0.031315	-0.00012547	NaN	28.487	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139930	+		60462	14007	34754	34755							0.07760395388561392
YVISLSVIT	9	Unmodified	_YVISLSVIT_					0	0	0			REV__ENSG00000088386|ENST00000376503|SLC15A1	REV__ENSG00000088386|ENST00000376503|SLC15A1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	497.794601	993.574648	0.50531	0.00025154	-2.018	-0.0010046	-1.5127	-0.00075301	497.7945278606866	82.939	0.3082	82.918	82.719	83.027	-0.020584	0.031315	0.00011453	NaN	28.487	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75143	+		60463	14007	34754	34755							0.07760395388561392
YVIWMVGAF	9	Unmodified	_YVIWMVGAF_					0	0	0		ENST00000482558.5_1_7:17908017-17937021:-|nuORF	ENST00000482558.5_1_7:17908017-17937021:-|nuORF	ENST00000482558.5_1_7:17908017-17937021:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.8094482421875	2	543.278063	1084.54157	0.68553	0.00037243	1.6595	0.00090159	2.3451	0.001274	543.7807171423198	45.363	0.48235	45.428	45.062	45.544	0.065048					25	17	2	0	0	0	0.19319	1	10019	10019		14.582	0	1	197750			60464	11047	34755	34756	73711	73711					0.002684900648546318
YVIYGIAAAF	10	Unmodified	_YVIYGIAAAF_					0	0	0		GPM6A|p.V234Ffs*9|1|0.34|ENSG00000150625|chr4:175635042-175635042|C/-|frameshift_variant;nc|ENSG00000150625|P51674-3|GPM6A;nc|ENSG00000150625|P51674-2|GPM6A;ENSG00000150625|ENST00000393658|GPM6A	GPM6A|p.V234Ffs*9|1|0.34|ENSG00000150625|chr4:175635042-175635042|C/-|frameshift_variant	GPM6A|p.V234Ffs*9|1|0.34|ENSG00000150625|chr4:175635042-175635042|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7774047851562	2	544.294768	1086.57498	0.60145	0.00032737	-0.9423	-0.00051289	-0.34085	-0.00018552	544.295075120732	53.398	0.77806	53.455	53.043	53.821	0.056255					45	28	2	0	0	0	0.25344	1	12674	12674		32.117	6.7177	1	554530			60465	4917	34756	34757	73712	73712					0.03515815108403331
YVIYGIAAAF	10	Unmodified	_YVIYGIAAAF_					0	0	0		GPM6A|p.V234Ffs*9|1|0.34|ENSG00000150625|chr4:175635042-175635042|C/-|frameshift_variant;nc|ENSG00000150625|P51674-3|GPM6A;nc|ENSG00000150625|P51674-2|GPM6A;ENSG00000150625|ENST00000393658|GPM6A	GPM6A|p.V234Ffs*9|1|0.34|ENSG00000150625|chr4:175635042-175635042|C/-|frameshift_variant	GPM6A|p.V234Ffs*9|1|0.34|ENSG00000150625|chr4:175635042-175635042|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	544.294768	1086.57498	0.60666	0.0003302	-0.29656	-0.00016141	0.31011	0.00016879	544.2950842331772	53.393	0.74376	53.393	53.062	53.806	0	-0.073246	0.00026945	NaN	32.117	44	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	672420			60466	4917	34756	34757							0.03515815108403331
YVIYGIAAAF	10	Unmodified	_YVIYGIAAAF_					0	0	0		GPM6A|p.V234Ffs*9|1|0.34|ENSG00000150625|chr4:175635042-175635042|C/-|frameshift_variant;nc|ENSG00000150625|P51674-3|GPM6A;nc|ENSG00000150625|P51674-2|GPM6A;ENSG00000150625|ENST00000393658|GPM6A	GPM6A|p.V234Ffs*9|1|0.34|ENSG00000150625|chr4:175635042-175635042|C/-|frameshift_variant	GPM6A|p.V234Ffs*9|1|0.34|ENSG00000150625|chr4:175635042-175635042|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	544.294768	1086.57498	0.68829	0.00037464	-0.6416	-0.00034922	0.046694	2.5415E-05	544.294966604811	53.561	0.84187	53.552	53.03	53.872	-0.0096054	0.085256	-0.00010616	NaN	32.117	47	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	650690			60467	4917	34756	34757							0.03515815108403331
YVKDSQEVSF	10	Unmodified	_YVKDSQEVSF_					0	0	0			REV__ENSG00000156162|ENST00000414645|DPY19L4	REV__ENSG00000156162|ENST00000414645|DPY19L4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.811767578125	2	601.290411	1200.56627	0.34825	0.0002094	0.41371	0.00024876	0.76196	0.00045816	601.7904264381147	69.793	1.887	69.771	68.972	70.859	-0.022087					179	67	4	0	0	0	0.34795	1	17663	17663		13.042	0.51092	1	570060	+		60468	16733	34757	34758	73713	73713					-0.02599203318709442
YVKELCDPK	9	Unmodified	_YVKELCDPK_					0	0	0			REV__ENSG00000184378|ENST00000330368|ACTRT3	REV__ENSG00000184378|ENST00000330368|ACTRT3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.76318359375	2	547.781167	1093.54778	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.652	1	42.652	42.152	43.152	0								0	0	0	0.21353	1	9302	9302		18.146	3.3081	1		+		60469	18315	34758	34759	73714	73714					0.004749635057123669
YVKELPLQRYK	11	Unmodified	_YVKELPLQRYK_					0	0	0			REV__ENSG00000099910|ENST00000328879|KLHL22	REV__ENSG00000099910|ENST00000328879|KLHL22	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	480.2999572753906	3	479.613522	1435.81874	0.3039	0.00014575	-0.024088	-1.1553E-05	0.27981	0.0001342	479.6135554953221	58.484	0.46958	58.484	58.269	58.739	0					39	15	3	0	0	0	0.33334	1	14232	14232		1.2148	0	1	489020	+		60470	14142	34759	34760	73715	73715					0.11825854482503928
YVKELPLQRYK	11	Unmodified	_YVKELPLQRYK_					0	0	0			REV__ENSG00000099910|ENST00000328879|KLHL22	REV__ENSG00000099910|ENST00000328879|KLHL22	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	479.613522	1435.81874	0.62865	0.00030151	-0.46961	-0.00022523	0.15904	7.6278E-05	479.61334517049835	58.504	0.60936	58.49	58.25	58.86	-0.014267	0.056909	-0.00053474	NaN	1.2148	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614060	+		60471	14142	34759	34760							0.11825854482503928
YVKESVLT	8	Unmodified	_YVKESVLT_					0	0	0			REV__ENSG00000183742|ENST00000400331|MACC1	REV__ENSG00000183742|ENST00000400331|MACC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	469.2388916015625	2	469.7633	937.512048	0.02764	1.2984E-05	0.97799	0.00045942	1.0056	0.00047241	469.763215552083	66.933	0.52955	66.92	66.765	67.294	-0.013588					26	18	2	0	0	0	0.33293	1	16838	16838		20.454	2.3186	1	175130	+		60472	18280	34760	34761	73716	73716					0.0407924932038668
YVKGADAIKL	10	Unmodified	_YVKGADAIKL_					0	0	0		nc|ENSG00000183579|Q9ULT6-2|ZNRF3;ENSG00000183579|ENST00000544604|ZNRF3	nc|ENSG00000183579|Q9ULT6-2|ZNRF3	nc|ENSG00000183579|Q9ULT6-2|ZNRF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.7820434570312	2	539.318774	1076.623	0.75009	0.00040454	-0.88287	-0.00047615	-0.13278	-7.1613E-05	539.3182878420092	49.972	0.28669	50.017	49.981	50.268	0.044891					14	10	2	0	0	0	0.3144	1	11627	11627		13.042	1.4022	1	240290			60473	7380	34761	34762	73717	73717					0.08774889028450161
YVKGLCFLF	9	Unmodified	_YVKGLCFLF_					0	0	0		nc|ENSG00000169896|P11215-2|ITGAM;ENSG00000169896|ENST00000544665|ITGAM;ITGAM|p.D529Tfs*2|1|0.31|ENSG00000169896|chr16:31297828-31297828|G/-|frameshift_variant	nc|ENSG00000169896|P11215-2|ITGAM	nc|ENSG00000169896|P11215-2|ITGAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7921752929688	2	545.293714	1088.57287	0.38836	0.00021177	1.4306	0.00078008	1.8189	0.00099185	545.2946732192227	76.371	0.42242	76.371	76.22	76.643	0					21	14	2	0	0	0	0.24739	1	19689	19689		8.5933	3.3626	1	156180			60474	6399	34762	34763	73718	73718					0.03213063098951352
YVKGLCFLF	9	Unmodified	_YVKGLCFLF_					0	0	0		nc|ENSG00000169896|P11215-2|ITGAM;ENSG00000169896|ENST00000544665|ITGAM;ITGAM|p.D529Tfs*2|1|0.31|ENSG00000169896|chr16:31297828-31297828|G/-|frameshift_variant	nc|ENSG00000169896|P11215-2|ITGAM	nc|ENSG00000169896|P11215-2|ITGAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.8213500976562	2	545.293714	1088.57287	0.72266	0.00039406	1.895	0.0010333	2.6176	0.0014274	545.2947766684686	59.102	1.1292	59.088	58.631	59.76	-0.014271					70	39	2	0	0	0	0.21905	1	14354	14354		16.942	0	1	433760			60475	6399	34762	34763	73719	73719					0.03213063098951352
YVKGLCFLF	9	Unmodified	_YVKGLCFLF_					0	0	0		nc|ENSG00000169896|P11215-2|ITGAM;ENSG00000169896|ENST00000544665|ITGAM;ITGAM|p.D529Tfs*2|1|0.31|ENSG00000169896|chr16:31297828-31297828|G/-|frameshift_variant	nc|ENSG00000169896|P11215-2|ITGAM	nc|ENSG00000169896|P11215-2|ITGAM	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3170166015625	2	545.293714	1088.57287	0.81355	0.00044362	-0.042085	-2.2949E-05	0.77146	0.00042067	545.7945188801731	84.821	0.78157	84.808	84.415	85.196	-0.01284					46	31	2	0	0	0	0.25291	1	22159	22159		9.3474	1.1919	1	214250			60476	6399	34762	34763	73720	73720					0.03213063098951352
YVKIIACLL	9	Unmodified	_YVKIIACLL_					0	0	0			REV__ENST00000524501.1_1_11:89867926-89868807:+|nuORF	REV__ENST00000524501.1_1_11:89867926-89868807:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3173217773438	2	518.317189	1034.61982	0.40032	0.0002075	0.024215	1.2551E-05	0.42454	0.00022005	518.3171293624647	76.325	3.1646	76.325	75.369	78.533	0					457	116	5	0	0	0	0.32415	2	19693	19693;19785		5.2307	0	1	8466300	+		60477	21940	34763	34764	73721;73722	73721					0.10389922650119843
YVKIIACLL	9	Unmodified	_YVKIIACLL_					0	0	0			REV__ENST00000524501.1_1_11:89867926-89868807:+|nuORF	REV__ENST00000524501.1_1_11:89867926-89868807:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3173217773438	2	518.317189	1034.61982	0.34416	0.00017838	0.15922	8.2526E-05	0.50338	0.00026091	518.3171734225309	76.222	2.8448	76.276	76.189	79.034	0.053413					351	104	5	0	0	0	0.29662	3	19680	19680;19720;19763		9.3474	0	1	5643900	+		60478	21940	34763	34764	73723;73724;73725	73723					0.10389922650119843
YVKKKKKK	8	Unmodified	_YVKKKKKK_					0	0	0		ENST00000358951.6_1_1:220323782-220323881:-|nuORF	ENST00000358951.6_1_1:220323782-220323881:-|nuORF	ENST00000358951.6_1_1:220323782-220323881:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.36328125	2	525.363319	1048.71209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.32	1	116.29	115.79	116.79	-0.022781								0	0	0	0.38004	1	30134	30134		0.69038	0.69038	1				60479	9656	34764	34765	73726	73726					0.18967768778634309
YVKLMIKL	8	Unmodified	_YVKLMIKL_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	504.3194274902344	2	504.319731	1006.62491	0.30101	0.0001518	-0.30749	-0.00015507	-0.0064786	-3.2673E-06	504.31927506410403	80.873	0.68053	80.873	80.599	81.28	0					83	31	3	0	0	0	0.45851	1	21135	21135		2.8892	0	1	608790	+		60480	14426	34765	34766	73727	73727					0.12186226512721987
YVKLPDANQLL	11	Unmodified	_YVKLPDANQLL_					0	0	0			REV__nc|ENSG00000019582|P04233-5|CD74	REV__nc|ENSG00000019582|P04233-5|CD74	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	637.3621215820312	2	637.36117	1272.70779	0.32055	0.00020431	0.69431	0.00044253	1.0149	0.00064683	637.3616579504774	80.923	0.52973	80.988	80.776	81.305	0.065102					49	25	3	0	0	0	0.35271	1	21021	21021		17.443	0	1	250390	+		60481	13460	34766	34767	73728	73728					0.08234214774438442
YVKNKNMFT	9	Unmodified	_YVKNKNMFT_					0	0	0			REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2623291015625	2	572.794609	1143.57467	0.72817	0.00041709	-0.71303	-0.00040842	0.015137	8.6704E-06	572.7945456952654	50.766	0.70793	50.813	50.434	51.142	0.046574					72	25	4	0	0	0	0.25526	1	11699	11699		7.9102	2.1783	1	501260	+		60482	18526	34767	34768	73729	73729					0.008620721169108947
YVKPLSNK	8	Unmodified	_YVKPLSNK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ENST00000589744.1_1_17:73949530-73951667:-|nuORF	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	474.55218505859375	2	474.779285	947.544017	0.14604	6.9338E-05	0.96154	0.00045652	1.1076	0.00052586	474.77941237771506	20.263	0.30765	20.263	20.18	20.487	0					15	10	2	0	0	0	0.34313	1	2467	2467		6.7232	1.9672	1	46480			60483	5516	34768	34769	73730	73730					0.06814661794192034
YVKPLSNK	8	Unmodified	_YVKPLSNK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ENST00000589744.1_1_17:73949530-73951667:-|nuORF	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	474.779285	947.544017	0.53907	0.00025594	-0.4634	-0.00022001	0.075669	3.5926E-05	474.77900400951427	20.526	0.16579	20.473	20.387	20.553	-0.05291	0.10528	-0.00029675	NaN	15.847	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28549			60484	5516	34768	34769							0.06814661794192034
YVKRAAAI	8	Unmodified	_YVKRAAAI_					0	0	0			REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	446.757568359375	2	446.27417	890.533787	0.41229	0.000184	-0.57472	-0.00025648	-0.16243	-7.2487E-05	446.2738904304015	37.206	0.75355	37.299	37.01	37.763	0.093014					37	27	2	0	0	0	0.34218	1	7750	7750		9.3474	0.75416	1	177870	+		60485	18012	34769	34770	73731	73731					0.08414098859600472
YVKRAAAI	8	Unmodified	_YVKRAAAI_					0	0	0			REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	446.27417	890.533787	0.66361	0.00029615	-0.97718	-0.00043609	-0.31357	-0.00013994	446.27364360791415	37.356	0.78238	37.356	37.013	37.795	0	0.018155	-0.00019995	NaN	5.2307	38	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216000	+		60486	18012	34769	34770							0.08414098859600472
YVKRAAAI	8	Unmodified	_YVKRAAAI_					0	0	0			REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	446.27417	890.533787	0.23431	0.00010457	-0.76897	-0.00034317	-0.53466	-0.00023861	446.27376013769447	37.27	0.62823	37.358	37.006	37.634	0.08741	0.020104	-1.4111E-05	NaN	5.2307	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211380	+		60487	18012	34769	34770							0.08414098859600472
YVKRSAKF	8	Unmodified	_YVKRSAKF_					0	0	0		ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	499.259033203125	2	499.792727	997.5709	0.60066	0.0003002	-0.43905	-0.00021943	0.16161	8.0771E-05	499.79256309329145	55.166	0.46508	55.166	54.837	55.302	0					28	16	2	0	0	0	0.32778	1	13156	13156		14.582	0	1	669730			60488	5162	34770	34771	73732	73732					0.07201770405367824
YVKSKILR	8	Unmodified	_YVKSKILR_					0	0	0			REV__ENST00000568690.1_1_15:30771297-30773124:+|nuORF	REV__ENST00000568690.1_1_15:30771297-30773124:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.2814025878906	2	503.824027	1005.6335	0.018502	9.3218E-06	0.31975	0.0001611	0.33826	0.00017042	503.8242019842665	14.912	0.22541	14.848	14.7	14.926	-0.064413					11	7	2	0	0	0	0.34272	1	890	890		7.9102	4.3137	1	27979	+		60489	22399	34771	34772	73733	73733					0.13090916473561265
YVKTIKTIEI	10	Unmodified	_YVKTIKTIEI_					0	0	0			REV__nc|ENSG00000107614|O14717-5|TRDMT1	REV__nc|ENSG00000107614|O14717-5|TRDMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	403.23187255859375	3	403.248068	1206.72238	0.092361	3.7244E-05	3.9504	0.001593	4.0428	0.0016302	403.24981149813215	29.467	0.36131	29.467	29.324	29.686	0					17	12	2	0	0	0	0.3198	1	5329	5329		2.086	0	1	45994	+		60490	22933	34772	34773	73734	73734					0.1272828692258372
YVLAFVYQSI	10	Unmodified	_YVLAFVYQSI_					0	0	0		ENST00000258739.8_1_7:6501076-6501211:-|nuORF	ENST00000258739.8_1_7:6501076-6501211:-|nuORF	ENST00000258739.8_1_7:6501076-6501211:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	601.3002319335938	2	601.826432	1201.63831	0.57529	0.00034623	-0.23246	-0.0001399	0.34283	0.00020632	601.8263572739164	89.536	0.41644	89.626	89.483	89.9	0.090569					31	30	2	0	0	0	0.3198	1	23766	23766		4.3292	0.73274	1	90559			60491	8945	34773	34774	73735	73735					0.04555755825663255
YVLCICILYV	10	Unmodified	_YVLCICILYV_					0	0	0		ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.3035888671875	2	601.321614	1200.62867	0.71126	0.0004277	0.20035	0.00012048	0.91161	0.00054817	601.3216174652698	84.437	1.2769	84.437	84.033	85.31	0					77	48	2	0	0	0	0.37587	1	22061	22061		7.9102	0	1	365670			60492	10228	34774	34775	73736	73736					0.036385282242690664
YVLCICILYV	10	Unmodified	_YVLCICILYV_					0	0	0		ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.3035278320312	2	601.321614	1200.62867	0.74653	0.00044891	0.12569	7.558E-05	0.87222	0.00052449	601.3212532427372	83.982	0.96165	83.982	83.148	84.109	0					60	37	2	0	0	0	0.31395	1	22015	22015		12.532	4.6214	1	225890			60493	10228	34774	34775	73737	73737					0.036385282242690664
YVLCICILYV	10	Unmodified	_YVLCICILYV_					0	0	0		ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.8262329101562	2	601.321614	1200.62867	0.47595	0.0002862	3.6613	0.0022016	4.1373	0.0024878	601.8265106750516	89.697	0.54736	89.696	89.387	89.935	-0.00081635					57	44	2	0	0	0	0.35073	1	23773	23773		12.532	5.8084	1	94714			60494	10228	34774	34775	73738	73738					0.036385282242690664
YVLCICILYV	10	Unmodified	_YVLCICILYV_					0	0	0		ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	601.321614	1200.62867	0.55632	0.00033452	2.6027	0.0015651	3.1591	0.0018996	601.8260174848493	89.791	0.089577	89.791	89.733	89.823	0	0.047501	-0.0010528	NaN	12.532	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42506			60495	10228	34774	34775							0.036385282242690664
YVLCWAPFF	9	Unmodified	_YVLCWAPFF_					0	0	0		ENSG00000126895|ENST00000646375|AVPR2;nc|ENSG00000126895|P30518-2|AVPR2;ENST00000434679.5_1_X:153170523-153172179:+|nuORF	ENSG00000126895|ENST00000646375|AVPR2	ENSG00000126895|ENST00000646375|AVPR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.7869262695312	2	573.278063	1144.54157	0.21281	0.000122	-2.7851	-0.0015966	-2.5723	-0.0014746	573.2764272237039	80.585	2.2958	80.585	79.524	81.82	0					163	96	2	0	0	0	0.22431	1	20880	20880		9.3474	4.1168	1	210170			60496	3300	34775	34776	73739	73739					-0.024915099351346726
YVLCWAPFFL	10	Unmodified	_YVLCWAPFFL_					0	0	0		ENSG00000126895|ENST00000646375|AVPR2;nc|ENSG00000126895|P30518-2|AVPR2;ENST00000434679.5_1_X:153170523-153172179:+|nuORF	ENSG00000126895|ENST00000646375|AVPR2	ENSG00000126895|ENST00000646375|AVPR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	629.8185424804688	2	629.820095	1257.62564	0.5215	0.00032845	-2.4551	-0.0015463	-1.9336	-0.0012178	629.8189015380137	20.032	0.24585	19.976	19.816	20.062	-0.055693					13	8	2	0	0	0	0.41642	1	2400	2400		0.45834	0	1	42227			60497	3300	34776	34777	73740	73740					0.007130211617550231
YVLCWAPFFL	10	Unmodified	_YVLCWAPFFL_					0	0	0		ENSG00000126895|ENST00000646375|AVPR2;nc|ENSG00000126895|P30518-2|AVPR2;ENST00000434679.5_1_X:153170523-153172179:+|nuORF	ENSG00000126895|ENST00000646375|AVPR2	ENSG00000126895|ENST00000646375|AVPR2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	629.820095	1257.62564	0.28945	0.0001823	-2.3106	-0.0014552	-2.0211	-0.0012729	629.8187783277776	19.931	0.21833	19.931	19.768	19.986	0	-0.022458	9.3904E-05	NaN	0.45834	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38128			60498	3300	34776	34777							0.007130211617550231
YVLDERDDM	9	Unmodified	_YVLDERDDM_					0	0	0			REV__ENST00000498643.1_1_17:1302531-1303404:-|nuORF	REV__ENST00000498643.1_1_17:1302531-1303404:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.8341064453125	2	578.252971	1154.49139	0.31425	0.00018172	-2.3768	-0.0013744	-2.0626	-0.0011927	578.2516616061067	71.32	0.42581	71.38	71.179	71.605	0.060783					19	14	3	0	0	0	0.25066	1	18072	18072		11.64	4.9171	1	162660	+		60499	14619	34777	34778	73741	73741					-0.07967709121589905
YVLFAPIVY	9	Unmodified	_YVLFAPIVY_					0	0	0			REV__ENSG00000109066|ENST00000335464|TMEM104	REV__ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8079833984375	2	542.807511	1083.60047	0.77384	0.00042005	0.16144	8.7628E-05	0.93528	0.00050768	542.807442506029	78.395	3.3081	78.395	77.204	80.513	0					287	127	4	0	0	0	0.32415	2	20585	20585;20683		5.2307	5.2307	1	1734500	+		60500	14625	34778	34779	73742;73743	73742					0.06201289630848805
YVLFAPIVY	9	Unmodified	_YVLFAPIVY_					0	0	0			REV__ENSG00000109066|ENST00000335464|TMEM104	REV__ENSG00000109066|ENST00000335464|TMEM104	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	542.807861328125	2	542.807511	1083.60047	0.93496	0.0005075	-0.0086134	-4.6754E-06	0.92634	0.00050283	542.8073887217688	78.34	3.3554	78.31	77.238	80.594	-0.030434					321	127	4	0	0	0	0.32415	1	20625	20625		5.2307	0	1	1617500	+		60501	14625	34778	34779	73744	73744					0.06201289630848805
YVLFKRFHR	9	Unmodified	_YVLFKRFHR_					0	0	0			REV__ENST00000429312.1_1_7:48942986-48943091:-|nuORF	REV__ENST00000429312.1_1_7:48942986-48943091:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3680419921875	2	633.366924	1264.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.27	1	117.27	116.77	117.77	0								0	0	0	0.2672	1	30332	30332		0.52476	0.12405	1		+		60502	20927	34779	34780	73745	73745					0.09752501379057321
YVLFKRFHR	9	Unmodified	_YVLFKRFHR_					0	0	0			REV__ENST00000429312.1_1_7:48942986-48943091:-|nuORF	REV__ENST00000429312.1_1_7:48942986-48943091:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	633.3681030273438	2	633.366924	1264.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.59	1	117.59	117.09	118.09	0								0	0	0	0.2672	1	30404	30404		0.52476	0.12405	1		+		60503	20927	34779	34780	73746	73746					0.09752501379057321
YVLFKRFHR	9	Unmodified	_YVLFKRFHR_					0	0	0			REV__ENST00000429312.1_1_7:48942986-48943091:-|nuORF	REV__ENST00000429312.1_1_7:48942986-48943091:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.36962890625	2	633.366924	1264.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.96	1	112.98	112.48	113.48	0.014824								0	0	0	0.2672	1	29394	29394		0.52476	0.066424	1		+		60504	20927	34779	34780	73747	73747					0.09752501379057321
YVLFKRFHR	9	Unmodified	_YVLFKRFHR_					0	0	0			REV__ENST00000429312.1_1_7:48942986-48943091:-|nuORF	REV__ENST00000429312.1_1_7:48942986-48943091:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	633.3687133789062	2	633.366924	1264.7193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.43	1	115.45	114.95	115.95	0.018738								0	0	0	0.2672	1	29982	29982		0.52476	0.066424	1		+		60505	20927	34779	34780	73748	73748					0.09752501379057321
YVLFPVLSF	9	Unmodified	_YVLFPVLSF_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|427|3|anti-sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|427|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8078002929688	2	542.807511	1083.60047	0.38438	0.00020864	0.65225	0.00035405	1.0366	0.00056269	542.8075942277254	76.282	1.8296	76.282	75.154	76.983	0					115	66	3	0	0	0	0.29662	1	19740	19740		9.3474	0.75416	1	417460	+		60506	22752	34780	34781	73749	73749					0.06201289630848805
YVLFPVLSF	9	Unmodified	_YVLFPVLSF_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|427|3|anti-sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|427|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.8079223632812	2	542.807511	1083.60047	0.37711	0.0002047	0.60731	0.00032965	0.98442	0.00053435	542.8074841441646	76.352	0.9566	76.405	76.161	77.118	0.053413					68	33	3	0	0	0	0.29662	2	19676	19676;19739		9.3474	1.1919	1	335750	+		60507	22752	34780	34781	73750;73751	73750					0.06201289630848805
YVLFPVLSF	9	Unmodified	_YVLFPVLSF_					0	0	0			REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|427|3|anti-sense	REV__HERVK-int_dup182|chr12:58328522-58335947:-|1.2896282045067735|0.1244487520727542|3.37|491.0|427|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.2968139648438	2	542.807511	1083.60047	0.441	0.00023938	-0.41459	-0.00022504	0.026412	1.4337E-05	542.807287149105	76.112	0.4332	76.166	75.756	76.189	0.053421					18	15	2	0	0	0	0.24739	1	19497	19497		13.508	2.3934	1	200750	+		60508	22752	34780	34781	73752	73752					0.06201289630848805
YVLFSSNIF	9	Unmodified	_YVLFSSNIF_					0	0	0		ENST00000569963.1_1_16:66860370-66864856:-|nuORF	ENST00000569963.1_1_16:66860370-66864856:-|nuORF	ENST00000569963.1_1_16:66860370-66864856:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.28369140625	2	545.2844	1088.55425	0.57119	0.00031146	-0.46999	-0.00025628	0.1012	5.5183E-05	545.2840123063761	58.542	1.1109	58.542	58.243	59.353	0					91	38	4	0	0	0	0.062246	1	14182	14182		48.346	3.9388	1	4799400			60509	12016	34781	34782	73753	73753					0.013512247287508217
YVLFSSNIF	9	Unmodified	_YVLFSSNIF_					0	0	0		ENST00000569963.1_1_16:66860370-66864856:-|nuORF	ENST00000569963.1_1_16:66860370-66864856:-|nuORF	ENST00000569963.1_1_16:66860370-66864856:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.8214111328125	2	545.2844	1088.55425	0.64125	0.00034966	-0.42099	-0.00022956	0.22026	0.0001201	545.2840184659674	58.347	1.2038	58.434	58.113	59.317	0.087097					100	42	4	0	0	0	0.11486	1	14181	14181		48.346	19.859	1	4402000			60510	12016	34781	34782	73754	73754					0.013512247287508217
YVLFSSNIF	9	Unmodified	_YVLFSSNIF_					0	0	0		ENST00000569963.1_1_16:66860370-66864856:-|nuORF	ENST00000569963.1_1_16:66860370-66864856:-|nuORF	ENST00000569963.1_1_16:66860370-66864856:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.2838134765625	2	545.2844	1088.55425	0.82429	0.00044947	0.27593	0.00015046	1.1002	0.00059994	545.2840031270928	58.689	1.0912	58.674	58.278	59.37	-0.014267					139	38	5	0	0	0	0.062246	1	14198	14198		48.346	3.9388	1	5060300			60511	12016	34781	34782	73755	73755					0.013512247287508217
YVLFYFLNC	9	Unmodified	_YVLFYFLNC_					0	0	0		ENST00000560776.1_1_15:59961053-59961500:-|nuORF	ENST00000560776.1_1_15:59961053-59961500:-|nuORF	ENST00000560776.1_1_15:59961053-59961500:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.8296508789062	2	591.288628	1180.5627	0.43413	0.0002567	-0.60992	-0.00036064	-0.17578	-0.00010394	591.2883499489615	70.382	0.85317	70.382	70.049	70.902	0					91	30	4	0	0	0	0.23783	1	17760	17760		18.135	0	1	2803400			60512	11903	34782	34783	73756	73756					-0.020355446262556143
YVLGLLQALAL	11	Unmodified	_YVLGLLQALAL_					0	0	0			REV__ENST00000398258.7_1_3:107774387-107777202:-|nuORF	REV__ENST00000398258.7_1_3:107774387-107777202:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.8165283203125	2	587.365724	1172.7169	0.33996	0.00019968	-0.58389	-0.00034296	-0.24394	-0.00014328	587.3654774698308	69.061	0.45308	69.042	68.843	69.296	-0.019157					24	15	2	0	0	0	0.3259	1	17371	17371		13.906	2.2658	1	189460	+		60513	18685	34783	34784	73757	73757					0.13744608130741653
YVLIHPLL	8	Unmodified	_YVLIHPLL_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	484.73114013671875	2	484.302396	966.590239	0.22007	0.00010658	0.5255	0.0002545	0.74557	0.00036108	484.30266777363147	68.336	0.43983	68.336	68.101	68.541	0					28	16	2	0	0	0	0.31651	1	17218	17218		24.21	0	1	282760	+		60514	17870	34784	34785	73758	73758					0.10560726696280653
YVLIHPLL	8	Unmodified	_YVLIHPLL_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.7310485839844	2	484.302396	966.590239	0.18442	8.9315E-05	0.58696	0.00028427	0.77138	0.00037358	484.3027449891351	68.242	0.45883	68.314	68.078	68.536	0.071938					27	16	2	0	0	0	0.33618	1	17197	17197		17.087	0	1	284420	+		60515	17870	34784	34785	73759	73759					0.10560726696280653
YVLIHPLL	8	Unmodified	_YVLIHPLL_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	484.7314453125	2	484.302396	966.590239	0.35437	0.00017162	0.10178	4.929E-05	0.45615	0.00022091	484.3024834145489	68.337	0.58364	68.318	67.963	68.547	-0.01915					31	20	2	0	0	0	0.31651	1	17221	17221		24.21	0	1	224440	+		60516	17870	34784	34785	73760	73760					0.10560726696280653
YVLKNKQLT	9	Unmodified	_YVLKNKQLT_					0	0	0		nc|ENSG00000175471|Q6DN14-5|MCTP1;nc|ENSG00000175471|Q6DN14-4|MCTP1;nc|ENSG00000175471|Q6DN14-3|MCTP1;nc|ENSG00000175471|Q6DN14-2|MCTP1;ENSG00000175471|ENST00000515393|MCTP1	nc|ENSG00000175471|Q6DN14-5|MCTP1	nc|ENSG00000175471|Q6DN14-5|MCTP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	554.3316650390625	2	553.832049	1105.64954	0.39125	0.00021669	-0.56973	-0.00031553	-0.17847	-9.8845E-05	553.8318359202779	41.711	1.2843	41.801	41.611	42.896	0.090252					96	50	2	0	0	0	0.17277	1	9143	9143		27.629	6.0918	1	4127700			60517	6866	34785	34786	73761	73761					0.10094577919790026
YVLKNKQLT	9	Unmodified	_YVLKNKQLT_					0	0	0		nc|ENSG00000175471|Q6DN14-5|MCTP1;nc|ENSG00000175471|Q6DN14-4|MCTP1;nc|ENSG00000175471|Q6DN14-3|MCTP1;nc|ENSG00000175471|Q6DN14-2|MCTP1;ENSG00000175471|ENST00000515393|MCTP1	nc|ENSG00000175471|Q6DN14-5|MCTP1	nc|ENSG00000175471|Q6DN14-5|MCTP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	554.3328857421875	2	553.832049	1105.64954	0.58983	0.00032666	-0.28752	-0.00015924	0.30231	0.00016743	553.8320060534667	41.645	1.1773	41.741	41.6	42.778	0.096622					81	44	2	0	0	0	0.11461	2	9073	9073;9098		36.127	4.5899	1	6447900			60518	6866	34785	34786	73762;73763	73762					0.10094577919790026
YVLLANFSF	9	Unmodified	_YVLLANFSF_					0	0	0		nc|ENSG00000258806|Q8NGC8|OR11H7	nc|ENSG00000258806|Q8NGC8|OR11H7	nc|ENSG00000258806|Q8NGC8|OR11H7	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7105712890625	2	537.286943	1072.55933	0.50588	0.0002718	-1.0979	-0.0005899	-0.59205	-0.0003181	537.7875989696893	66.781	1.0225	66.781	66.514	67.536	0					54	35	2	0	0	0	0.21905	1	16717	16717		23.148	8.5667	1	505410			60519	12982	34786	34787	73764	73764					0.0259552859138239
YVLLFGTALG	10	Unmodified	_YVLLFGTALG_					0	0	0		ENST00000497006.1_1_9:34637208-34637655:-|nuORF;nc|ENSG00000147955|Q99720-3|SIGMAR1;ENSG00000147955|ENST00000277010|SIGMAR1;ENST00000461426.1_1_9:34635631-34637430:-|nuORF;nc|ENSG00000147955|Q99720-5|SIGMAR1;nc|ENSG00000147955|Q99720-2|SIGMAR1	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	ENST00000497006.1_1_9:34637208-34637655:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2907104492188	2	527.302593	1052.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.303	1	52.303	51.803	52.803	0								0	0	0	0.27706	1	12269	12269		30.637	3.0077	1				60520	4789	34787	34788	73765	73765					0.06644101625443
YVLLNDFLFF	10	Unmodified	_YVLLNDFLFF_					0	0	0			REV__nc|ENSG00000124126|Q8TCU6-3|PREX1	REV__nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	431.56671142578125	3	430.897147	1289.66961	-0.07944	-3.4231E-05	0.11564	4.983E-05	0.036203	1.56E-05	431.23148178784106	37.736	0.61947	37.833	37.503	38.122	0.097527					30	22	2	0	0	0	0.31289	1	7755	7755		12.175	0	1	242250	+		60521	15208	34788	34789	73766	73766					0.03636328859738569
YVLLPLWP	8	Unmodified	_YVLLPLWP_					0	0	0			REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	500.788330078125	2	500.796946	999.57934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.76	1	82.76	82.26	83.26	0								0	0	0	0.3683	1	21620	21620		6.3541	0	1		+		60522	18778	34789	34790	73767	73767					0.07953324321988475
YVLNSMQSF	9	Unmodified	_YVLNSMQSF_					0	0	0			REV__nc|ENSG00000198538|P17035-2|ZNF28	REV__nc|ENSG00000198538|P17035-2|ZNF28	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	545.3168334960938	2	544.757692	1087.50083	0.62454	0.00034022	-0.97524	-0.00053127	-0.3507	-0.00019105	544.7574924934762	87.915	0.43887	87.915	87.68	88.119	0					30	20	2	0	0	0	0.24739	1	23133	23133		13.508	1.8676	1	150120	+		60523	18831	34790	34791	73768	73768					-0.03941896045421345
YVLQDGSPY	9	Unmodified	_YVLQDGSPY_					0	0	0		ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	522.25439453125	2	521.248015	1040.48148	0.60334	0.00031449	0.97626	0.00050887	1.5796	0.00082336	521.2479095566616	84.259	0.41724	84.242	84.072	84.489	-0.016823					33	16	3	0	0	0	0.26879	1	22064	22064		13.508	0	1	133040			60524	5658	34791	34792	73769	73769					-0.03714529064677663
YVLQSFTEL	9	Unmodified	_YVLQSFTEL_					0	0	0			REV__ENST00000513079.5_1_5:73981085-74001232:+|nuORF	REV__ENST00000513079.5_1_5:73981085-74001232:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	550.277099609375	2	550.28714	1098.55973	0.50062	0.00027548	0.15743	8.6634E-05	0.65805	0.00036212	550.7882769806023	73.229	0.49593	73.199	72.98	73.476	-0.029297					27	17	2	0	0	0	0.062246	1	18730	18730		48.346	0	1	251730	+		60525	13559	34792	34793	73770	73770					0.01438903520556778
YVLQSFTEL	9	Unmodified	_YVLQSFTEL_					0	0	0			REV__ENST00000513079.5_1_5:73981085-74001232:+|nuORF	REV__ENST00000513079.5_1_5:73981085-74001232:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	550.28714	1098.55973	0.50062	0.00027548	0.15743	8.6634E-05	0.65805	0.00036212	550.7882769806023	73.229	0.49593	73.199	72.98	73.476	-0.029297	-0.016158	-0.0005018	NaN	48.346	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251730	+		60526	13559	34792	34793							0.01438903520556778
YVLRGHALF	9	Unmodified	_YVLRGHALF_					0	0	0			REV__nc|ENSG00000112769|Q16363-2|LAMA4	REV__nc|ENSG00000112769|Q16363-2|LAMA4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2951049804688	2	538.306001	1074.59745	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.595	1	63.586	63.086	64.086	-0.0085526								0	0	0	0.23091	1	15748	15748		12.532	0.89125	1		+		60527	14787	34793	34794	73771	73771					0.06313459296688961
YVLSGARTL	9	Unmodified	_YVLSGARTL_					0	0	0		ENST00000486739.1_1_14:74206920-74256570:-|nuORF	ENST00000486739.1_1_14:74206920-74256570:-|nuORF	ENST00000486739.1_1_14:74206920-74256570:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.8092956542969	2	490.282192	978.549831	0.34823	0.00017073	-0.68227	-0.00033451	-0.33404	-0.00016377	490.28163437313947	57.312	0.5539	57.397	57.184	57.738	0.085617					35	19	3	0	0	0	0.24311	1	13755	13755		16.942	2.3606	1	580850			60528	11106	34794	34795	73772	73772					0.05969760305856653
YVLTCPDMLR	10	Unmodified	_YVLTCPDMLR_					0	0	0		ENSG00000183134|ENST00000332539|PTGDR2	ENSG00000183134|ENST00000332539|PTGDR2	ENSG00000183134|ENST00000332539|PTGDR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.2156677246094	3	404.203477	1209.5886	-0.13587	-5.4918E-05	0.56106	0.00022678	0.42519	0.00017186	404.2037504008785	29.381	0.31525	29.393	29.244	29.56	0.012266					18	10	2	0	0	0	0.37568	1	5239	5239		7.9454	0.90831	1	89306			60529	7349	34795	34796	73773	73773					-0.007810184463096448
YVLTFNFQGK	10	Unmodified	_YVLTFNFQGK_					0	0	0		ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2;nc|ENSG00000178188|Q9NRF2-2|SH2B1;nc|ENSG00000178188|Q9NRF2-3|SH2B1;ENSG00000178188|ENST00000684370|SH2B1	ENSG00000160999|ENST00000444095|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	406.78521728515625	3	406.21688	1215.62881	-0.15526	-6.307E-05	0.58327	0.00023693	0.42801	0.00017386	406.21687864495277	26.993	0.87345	26.972	26.564	27.437	-0.021412					51	30	2	0	0	0	0.31847	1	4563	4563		1.7423	0	1	155570			60530	5503	34796	34797	73774	73774					0.02961987540129485
YVLTKITR	8	Unmodified	_YVLTKITR_					0	0	0			REV__ENST00000471188.5_1_7:92887474-92887687:+|nuORF	REV__ENST00000471188.5_1_7:92887474-92887687:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7821044921875	2	497.30821	992.601866	0.47445	0.00023595	-0.1492	-7.42E-05	0.32524	0.00016175	497.3079865637924	40.129	0.49561	40.229	40.01	40.505	0.099403					30	17	2	0	0	0	0.34185	1	8460	8460		10.183	0.83596	1	195180	+		60531	21356	34797	34798	73775	73775					0.10526923719612569
YVLVYYNL	8	Unmodified	_YVLVYYNL_					0	0	0		ENST00000394901.7_1_17:27229818-27230019:-|nuORF;DHRS13|p.L148Cfs*2|1|0.36|ENSG00000167536|chr17:28901231-28901231|A/-|frameshift_variant;nc|ENSG00000167536|Q6UX07-3|DHRS13;ENSG00000167536|ENST00000378895|DHRS13	ENST00000394901.7_1_17:27229818-27230019:-|nuORF	ENST00000394901.7_1_17:27229818-27230019:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	523.8036499023438	2	523.781493	1045.54843	0.53535	0.0002804	-4.393	-0.002301	-3.8577	-0.0020206	523.7789063923203	59.709	0.45535	59.697	59.459	59.915	-0.011486					24	15	2	0	0	0	0.30749	1	14525	14525		20.871	8.3397	1	423730			60532	264	34798	34799	73776	73776					0.027481262170795162
YVLYPCEYEMH	11	Unmodified	_YVLYPCEYEMH_					0	0	0			REV__ENSG00000176170|ENST00000592299|SPHK1	REV__ENSG00000176170|ENST00000592299|SPHK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	483.2562255859375	3	482.873796	1445.59956	0.34445	0.00016632	-1.1477	-0.0005542	-0.80327	-0.00038788	483.2075087175192	29.916	0.11252	29.916	29.833	29.945	0					5	3	2	0	0	0	0.33346	1	5399	5399		0.50596	0	1	33701	+		60533	17925	34799	34800	73777	73777					-0.1054166086269106
YVMAKVIVI	9	Unmodified	_YVMAKVIVI_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ;PKDREJ|p.T1156I|1|0.16|ENSG00000130943|chr22:46259856-46259856|G/A|missense_variant	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.3172607421875	2	518.317189	1034.61982	0.47766	0.00024758	-0.14704	-7.6216E-05	0.33061	0.00017136	518.3169345121472	79.471	1.2649	79.471	79.057	80.322	0					136	48	4	0	0	0	0.34374	1	20529	20529		2.3027	2.3027	1	1246200			60534	3530	34800	34801	73778	73778					0.10389922650097105
YVMAKVIVI	9	Unmodified	_YVMAKVIVI_					0	0	0		ENSG00000130943|ENST00000253255|PKDREJ;PKDREJ|p.T1156I|1|0.16|ENSG00000130943|chr22:46259856-46259856|G/A|missense_variant	ENSG00000130943|ENST00000253255|PKDREJ	ENSG00000130943|ENST00000253255|PKDREJ	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3174438476562	2	518.317189	1034.61982	0.49679	0.00025749	-0.051654	-2.6773E-05	0.44513	0.00023072	518.3170881604384	76.271	4.1828	76.239	74.838	79.021	-0.031479					502	157	4	0	0	0	0.34374	1	20428	20428		2.3027	0	1	7331400			60535	3530	34800	34801	73779	73779					0.10389922650097105
YVMCSLLYPL	10	Unmodified	_YVMCSLLYPL_					0	0	0		ENST00000588465.5_1_19:10745842-10745959:+|nuORF;nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;nc|ENSG00000129353|Q8IWA5-2|SLC44A2	ENST00000588465.5_1_19:10745842-10745959:+|nuORF	ENST00000588465.5_1_19:10745842-10745959:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	602.7996826171875	2	601.303421	1200.59229	0.73543	0.00044221	-0.3577	-0.00021508	0.37773	0.00022713	601.3032656649201	83.983	1.3131	83.983	83.681	84.994	0					152	51	4	0	0	0	0.34325	1	21945	21945		13.906	1.3745	1	3483000			60536	3422	34801	34802	73780	73780					1.6513275795659865E-05
YVMDCYFDM	9	Unmodified	_YVMDCYFDM_					0	0	0			REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF	REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.2174682617188	2	593.716321	1185.41809	0.4864	0.00028878	0.27243	0.00016175	0.75884	0.00045053	593.7162182309039	71.375	0.58993	71.375	71.128	71.718	0					33	20	3	0	0	0	0.34374	1	18144	18144		2.3027	0.24298	1	388490	+		60537	21373	34802	34803	73781	73781					-0.1672029716007728
YVMDCYFDM	9	Unmodified	_YVMDCYFDM_					0	0	0			REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF	REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.3610229492188	2	593.716321	1185.41809	0.4864	0.00028878	0.27243	0.00016175	0.75884	0.00045053	593.7162182309039	71.375	0.58993	71.375	71.128	71.718	0					33	20	3	0	0	0	0.26117	1	18073	18073		2.3027	0.9732	1	388490	+		60538	21373	34802	34803	73782	73782					-0.1672029716007728
YVMDCYFDM	9	Unmodified	_YVMDCYFDM_					0	0	0			REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF	REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	593.716064453125	2	593.716321	1185.41809	0.49578	0.00029435	-0.19617	-0.00011647	0.29961	0.00017788	593.7160744267485	71.437	0.58022	71.41	71.185	71.765	-0.027275					26	20	2	0	0	0	0.32733	1	18143	18143		4.756	3.4265	1	406940	+		60539	21373	34802	34803	73783	73783					-0.1672029716007728
YVMKKRIV	8	Unmodified	_YVMKKRIV_					0	0	0		ENST00000402676.6_1_6:151677651-151677711:+|nuORF	ENST00000402676.6_1_6:151677651-151677711:+|nuORF	ENST00000402676.6_1_6:151677651-151677711:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	518.2954711914062	2	518.82043	1035.62631	0.46659	0.00024208	-0.59539	-0.0003089	-0.1288	-6.6822E-05	518.8200524163213	49.671	0.51694	49.671	49.351	49.868	0					23	18	2	0	0	0	0.3439	1	11461	11461		2.8892	0	1	282260			60540	10200	34803	34804	73784	73784					0.10991860601461667
YVMLEQLK	8	Unmodified	_YVMLEQLK_					0	0	0		ENST00000392852.7_1_11:118512280-118516420:+|nuORF	ENST00000392852.7_1_11:118512280-118516420:+|nuORF	ENST00000392852.7_1_11:118512280-118516420:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	512.2831420898438	2	512.280803	1022.54705	0.12765	6.5393E-05	2.7628	0.0014153	2.8905	0.0014807	512.2816562398382	18.816	0.9861	18.816	18.535	19.521	0					56	34	3	0	0	0	0.44569	1	2107	2107		7.2892	2.5332	1	136920			60541	10035	34804	34805	73785	73785					0.036681688566886805
YVMLKLPK	8	Unmodified	_YVMLKLPK_					0	0	0			REV__ENST00000470910.5_1_3:39141874-39142383:-|nuORF	REV__ENST00000470910.5_1_3:39141874-39142383:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.30401611328125	2	496.304081	990.59361	0.41687	0.0002069	-0.18064	-8.9651E-05	0.23624	0.00011725	496.30387669744533	74.068	3.1764	74.068	73.191	76.367	0					302	112	4	0	0	0	0.45851	1	19141	19141		2.8892	0	1	4670700	+		60542	14845	34805	34806	73786	73786					0.09793653478629949
YVMLKLPK	8	Unmodified	_YVMLKLPK_					0	0	0			REV__ENST00000470910.5_1_3:39141874-39142383:-|nuORF	REV__ENST00000470910.5_1_3:39141874-39142383:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.3041687011719	2	496.304081	990.59361	0.41396	0.00020545	-0.033477	-1.6615E-05	0.38048	0.00018883	496.30394259333224	74.198	1.8802	74.168	73.18	75.06	-0.030663					230	67	4	0	0	0	0.45851	1	19080	19080		2.8892	0	1	4288300	+		60543	14845	34805	34806	73787	73787					0.09793653478629949
YVMSYFDLSS	10	Unmodified	_YVMSYFDLSS_					0	0	0			REV__ENST00000556803.1_1_14:23820757-23821058:-|nuORF	REV__ENST00000556803.1_1_14:23820757-23821058:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	606.2682495117188	2	606.26809	1210.52163	0.15737	9.5408E-05	0.58768	0.00035629	0.74505	0.0004517	606.2681789135158	66.929	0.93065	66.916	66.634	67.565	-0.013588					70	32	3	0	0	0	0.33268	1	16781	16781		15.847	1.0089	1	304790	+		60544	22265	34806	34807	73788	73788					-0.07521350456386244
YVMSYFDLSS	10	Unmodified	_YVMSYFDLSS_					0	0	0			REV__ENST00000556803.1_1_14:23820757-23821058:-|nuORF	REV__ENST00000556803.1_1_14:23820757-23821058:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	606.26809	1210.52163	0.48915	0.00029655	0.13049	7.9113E-05	0.61964	0.00037567	606.2677317790552	66.806	0.56149	66.806	66.545	67.106	0	-0.052124	-0.00040212	NaN	15.847	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212690	+		60545	22265	34806	34807							-0.07521350456386244
YVMSYFDLSS	10	Unmodified	_YVMSYFDLSS_					0	0	0			REV__ENST00000556803.1_1_14:23820757-23821058:-|nuORF	REV__ENST00000556803.1_1_14:23820757-23821058:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	606.26809	1210.52163	0.47702	0.0002892	0.55144	0.00033432	1.0285	0.00062352	606.2682590613208	66.769	0.89507	66.853	66.572	67.467	0.083824	-0.0055738	0.00010828	NaN	15.847	48	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214780	+		60546	22265	34806	34807							-0.07521350456386244
YVMSYFDLSS	10	Unmodified	_YVMSYFDLSS_					0	0	0			REV__ENST00000556803.1_1_14:23820757-23821058:-|nuORF	REV__ENST00000556803.1_1_14:23820757-23821058:-|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	606.26809	1210.52163	0.15737	9.5408E-05	0.58768	0.00035629	0.74505	0.0004517	606.2681789135158	66.929	0.93065	66.916	66.634	67.565	-0.013588	0.057697	0.00015223	NaN	15.847	70	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304790	+		60547	22265	34806	34807							-0.07521350456386244
YVMYCDPF	8	Unmodified	_YVMYCDPF_					0	0	0		HERV16-int_dup508|chr4:121323998-121324584:-|1.187224277094717|0.0129401805042467|6.52|520.0|38|3|anti-sense	HERV16-int_dup508|chr4:121323998-121324584:-|1.187224277094717|0.0129401805042467|6.52|520.0|38|3|anti-sense	HERV16-int_dup508|chr4:121323998-121324584:-|1.187224277094717|0.0129401805042467|6.52|520.0|38|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.7999877929688	2	519.208989	1036.40343	0.60537	0.00031431	-2.5185	-0.0013076	-1.9132	-0.00099333	519.2077715504437	75.171	0.39555	75.139	74.922	75.318	-0.031479					21	14	2	0	0	0	0.34297	1	19286	19286		2.8892	0.58649	1	135050			60548	12397	34807	34808	73789	73789					-0.11332001245932588
YVMYLVEIF	9	Unmodified	_YVMYLVEIF_					0	0	0			REV__ENST00000510742.1_1_5:68503946-68505623:+|nuORF	REV__ENST00000510742.1_1_5:68503946-68505623:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.8060913085938	2	588.804111	1175.59367	0.045369	2.6714E-05	2.7131	0.0015975	2.7584	0.0016242	588.806007855524	59.909	0.36019	59.909	59.675	60.035	0					22	12	2	0	0	0	0.20344	1	14632	14632		23.148	0.41214	1	394250	+		60549	21802	34808	34809	73790	73790					0.012896086879663926
YVMYLVEIF	9	Unmodified	_YVMYLVEIF_					0	0	0			REV__ENST00000510742.1_1_5:68503946-68505623:+|nuORF	REV__ENST00000510742.1_1_5:68503946-68505623:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	588.804111	1175.59367	0.045369	2.6714E-05	2.7131	0.0015975	2.7584	0.0016242	588.806007855524	59.909	0.36019	59.909	59.675	60.035	0	0.039793	0.00042761	NaN	23.148	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	394250	+		60550	21802	34808	34809							0.012896086879663926
YVMYLVEIF	9	Unmodified	_YVMYLVEIF_					0	0	0			REV__ENST00000510742.1_1_5:68503946-68505623:+|nuORF	REV__ENST00000510742.1_1_5:68503946-68505623:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	588.804111	1175.59367	-0.056843	-3.3469E-05	1.7029	0.0010027	1.646	0.0009692	588.8058816770524	59.799	0.69324	59.894	59.412	60.105	0.095093	0.025057	-0.00076197	NaN	23.148	38	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402320	+		60551	21802	34808	34809							0.012896086879663926
YVNGRIWPGGP	11	Unmodified	_YVNGRIWPGGP_					0	0	0			REV__ENSG00000144591|ENST00000313597|GMPPA	REV__ENSG00000144591|ENST00000313597|GMPPA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.846923828125	2	608.317097	1214.61964	0.62963	0.00038302	0.44431	0.00027028	1.0739	0.0006533	608.3174985296162	84.795	1.4147	84.795	84.376	85.791	0					109	53	3	0	0	0	0.33085	1	22257	22257		6.2058	0.47393	1	607090	+		60552	16245	34809	34810	73791	73791					0.020916389744343178
YVNGSGTPYEI	11	Unmodified	_YVNGSGTPYEI_					0	0	0			REV__ENSG00000119669|ENST00000238647|IRF2BPL	REV__ENSG00000119669|ENST00000238647|IRF2BPL	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.282470703125	2	600.282586	1198.55062	0.32869	0.00019731	-0.61876	-0.00037143	-0.29007	-0.00017412	600.2820100312745	57.82	0.69276	57.803	57.555	58.247	-0.0172					52	25	3	0	0	0	0.26921	1	13957	13957		24.991	0.97039	1	936700	+		60553	15050	34810	34811	73792	73792					-0.040714898357464335
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.79248046875	2	544.792392	1087.57023	1.1048	0.0006019	-0.55424	-0.00030195	0.55059	0.00029996	544.7929550534034	56.087	3.6983	56.087	55.628	59.326	0					439	133	6	0	0	0	0.072844	1	14427	14427		44.407	2.3125	1	380150000			60554	4286;3129	34811	34812	73793	73793					0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7926025390625	2	544.792392	1087.57023	0.81505	0.00044403	-0.12808	-6.9775E-05	0.68697	0.00037426	544.7922642893479	74.575	0.57961	74.575	74.432	75.012	0					30	20	2	0	0	0	0.11517	1	19107	19107		36.044	1.9418	1	361100			60555	4286;3129	34811	34812	73794	73794					0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.7919921875	2	544.792392	1087.57023	0.29268	0.00015945	0.31624	0.00017229	0.60893	0.00033174	544.7923857326881	75.84	1.3488	75.84	74.962	76.31	0					91	48	2	0	0	0	0.23775	1	19357	19357		18.135	1.1927	1	407840			60556	4286;3129	34811	34812	73795	73795					0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	544.8106689453125	2	544.792392	1087.57023	0.55557	0.00030267	-0.061686	-3.3606E-05	0.49389	0.00026907	544.7921788503878	72.13	1.0252	72.13	71.884	72.909	0					87	37	3	0	0	0	0.21137	1	18584	18584		24.674	3.8027	1	247980			60557	4286;3129	34811	34812	73796	73796					0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7927856445312	2	544.792392	1087.57023	1.0798	0.00058825	-0.54448	-0.00029663	0.53529	0.00029162	544.7929497205371	55.993	4.5378	56.064	55.618	60.156	0.070889					447	165	6	0	0	0	0.072844	1	14433	14433		44.407	4.4497	1	384440000			60558	4286;3129	34811	34812	73797	73797					0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7926025390625	2	544.792392	1087.57023	0.63275	0.00034472	0.22211	0.000121	0.85486	0.00046572	544.7925512866735	68.022	4.266	68.1	67.461	71.727	0.078041					337	153	5	0	0	0	0.155	1	17817	17817		30.225	7.4885	1	18546000			60559	4286;3129	34811	34812	73798	73798					0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	544.7918701171875	2	544.792392	1087.57023	0.56743	0.00030913	0.48681	0.00026521	1.0542	0.00057434	544.7921207090126	76.279	1.4599	76.332	76.161	77.621	0.053413					90	51	2	0	0	0	0.193	1	19799	19799		24.674	1.5255	1	253910			60560	4286;3129	34811	34812	73799	73799					0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3167114257812	2	544.792392	1087.57023	0.82309	0.00044841	-0.11892	-6.4784E-05	0.70417	0.00038363	544.7918762024041	84.811	1.2359	84.892	84.101	85.337	0.080887					83	48	2	0	0	0	0.1659	1	22119	22119		28.487	0	1	164690			60561	4286;3129	34811	34812	73800	73800					0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7926025390625	2	544.792392	1087.57023	1.1952	0.00065112	-0.4434	-0.00024156	0.75177	0.00040956	544.7930213659608	56.262	4.4551	56.243	55.646	60.101	-0.019081					450	161	6	0	0	0	0.072844	1	14451	14451		44.407	4.4497	1	417290000			60562	4286;3129	34811	34812	73801	73801					0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7926635742188	2	544.792392	1087.57023	0.85544	0.00046604	-0.85045	-0.00046332	0.0049914	2.7193E-06	544.7916237931133	60.508	1.2211	60.499	59.999	61.22	-0.0094566					94	44	3	0	0	0	0.155	1	14925	14925		30.225	8.4782	1	5525100			60563	4286;3129	34811	34812	73802	73802					0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7922973632812	2	544.792392	1087.57023	0.64455	0.00035115	0.19643	0.00010702	0.84098	0.00045816	544.7925558762294	68.127	5.2459	68.107	67.448	72.694	-0.019157					359	188	6	0	0	0	0.037693	1	17780	17780		57.471	17.514	1	21422000			60564	4286;3129	34811	34812	73803	73803					0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7927856445312	2	544.792392	1087.57023	0.69407	0.00037812	-0.064373	-3.507E-05	0.62969	0.00034305	544.792101617097	75.807	2.3996	75.776	74.786	77.186	-0.031479					130	88	2	0	0	0	0.072844	2	19741	19741;19808		44.407	6.2558	1	464200			60565	4286;3129	34811	34812	73804;73805	73804					0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.7923583984375	2	544.792392	1087.57023	0.73604	0.00040099	0.64687	0.00035241	1.3829	0.0007534	544.7920252003233	86.786	1.6839	86.781	86.286	87.97	-0.0056229					114	77	2	0	0	0	0.23775	1	23106	23106		18.135	1.1927	1	169000			60566	4286;3129	34811	34812	73806	73806					0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3169555664062	2	544.792392	1087.57023	0.79977	0.00043571	0.46651	0.00025415	1.2663	0.00068986	544.7921315762721	83.694	1.3103	83.677	82.625	83.935	-0.016823					83	54	2	0	0	0	0.1524	1	21898	21898		39.957	9.7325	1	188300			60567	4286;3129	34811	34812	73807	73807					0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	544.81591796875	2	544.792392	1087.57023	0.74655	0.00040672	1.4248	0.00077623	2.1714	0.0011829	545.2951500869311	90.859	0.32393	90.859	90.591	90.915	0.0003891					39	25	2	0	0	0	0.21137	1	24103	24103		24.674	0.65332	1	174510			60568	4286;3129	34811	34812	73808	73808					0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.792392	1087.57023	0.59931	0.0003265	-0.20715	-0.00011286	0.39216	0.00021365	544.792105622162	74.656	1.0219	74.708	74.353	75.375	0.052368	0.066815	-2.9368E-05	NaN	36.044	53	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233970			60569	4286;3129	34811	34812							0.029949309656331025
YVNKFASLF	9	Unmodified	_YVNKFASLF_					0	0	0		ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	544.792392	1087.57023	0.54978	0.00029952	0.096711	5.2688E-05	0.6465	0.00035221	544.7921952959011	75.782	0.91258	75.836	75.376	76.289	0.053413	0.0187	-3.3022E-05	NaN	44.407	73	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	458810			60570	4286;3129	34811	34812							0.029949309656331025
YVNKIVIY	8	Unmodified	_YVNKIVIY_					0	0	0			REV__nc|ENSG00000235818|Q8TDU5|VN1R17P	REV__nc|ENSG00000235818|Q8TDU5|VN1R17P	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	506.3135070800781	2	506.29731	1010.58007	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.495	1	57.478	56.978	57.978	-0.0172								0	0	0	0.35779	1	13872	13872		11.114	0.93107	1		+		60571	23205	34812	34813	73809	73809					0.07520118971024203
YVNNNWYIF	9	Unmodified	_YVNNNWYIF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.8012084960938	2	616.790381	1231.56621	-0.070595	-4.3542E-05	-0.040689	-2.5096E-05	-0.11128	-6.8639E-05	616.7902516967625	65.122	1.2321	65.111	64.66	65.892	-0.011337					118	44	4	0	0	0	0.25526	1	16079	16079		7.9102	0	1	2532300			60572	6352	34813	34814	73810	73810					-0.0403115852807332
YVNRYIKN	8	Unmodified	_YVNRYIKN_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;nc|ENSG00000132549|Q7Z7G8-4|VPS13B;nc|ENSG00000132549|Q7Z7G8-5|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.8002319335938	2	535.293091	1068.57163	0.14151	7.5748E-05	-0.14172	-7.586E-05	-0.00021094	-1.1291E-07	535.2929818224026	35.463	0.3283	35.538	35.234	35.563	0.075306					16	11	2	0	0	0	0.34218	1	7047	7047		9.3474	0	1	260640			60573	3647	34814	34815	73811	73811					0.04008565054414248
YVNTQGASLF	10	Unmodified	_YVNTQGASLF_					0	0	0		PLG|p.Q740Ifs*14|1|0.04|ENSG00000122194|chr6:160752207-160752208|CA/-|frameshift_variant;ENSG00000122194|ENST00000308192|PLG	PLG|p.Q740Ifs*14|1|0.04|ENSG00000122194|chr6:160752207-160752208|CA/-|frameshift_variant	PLG|p.Q740Ifs*14|1|0.04|ENSG00000122194|chr6:160752207-160752208|CA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2981567382812	2	550.274564	1098.53457	0.42486	0.00023379	0.31129	0.00017129	0.73614	0.00040508	550.2745691024944	62.777	0.86091	62.777	62.424	63.285	0					110	31	5	0	0	0	0.36002	1	15488	15488		10.824	0	1	3364800			60574	3032	34815	34816	73812	73812					-0.010751512820206699
YVNTYGRIT	9	Unmodified	_YVNTYGRIT_					0	0	0		nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4	nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000154310|Q9UKE5-8|TNIK	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7955932617188	2	543.782556	1085.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.019	1	39.112	38.612	39.612	0.09267								0	0	0	0.20238	1	8191	8191		21.747	0.20967	1				60575	5122;949	34816	34817	73813	73813					0.01120554954900399
YVNVFTISSCC	11	Unmodified	_YVNVFTISSCC_					0	0	0			REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8	REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.79248046875	2	618.275392	1234.53623	0.48804	0.00030175	-0.16016	-9.9026E-05	0.32788	0.00020272	618.2752669102375	64.226	0.56547	64.226	64.026	64.591	0					39	20	3	0	0	0	0.41288	1	16017	16017		9.544	1.3884	1	377910	+		60576	14751	34817	34818	73814	73814					-0.0716560157989079
YVNVFTISSCC	11	Unmodified	_YVNVFTISSCC_					0	0	0			REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8	REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.7919921875	2	618.275392	1234.53623	0.4292	0.00026536	0.21569	0.00013336	0.64489	0.00039872	618.2754613616814	64.292	0.47836	64.283	64.045	64.523	-0.0095291					35	17	3	0	0	0	0.38187	1	16003	16003		13.615	1.0833	1	399100	+		60577	14751	34817	34818	73815	73815					-0.0716560157989079
YVPAKAPLSK	10	Unmodified	_YVPAKAPLSK_					0	0	0			REV__ENSG00000124564|ENST00000397060|SLC17A3	REV__ENSG00000124564|ENST00000397060|SLC17A3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	536.8189086914062	2	537.321317	1072.62808	0.17996	9.6697E-05	-0.66227	-0.00035585	-0.48231	-0.00025916	537.3208457628996	34.229	1.2487	34.295	33.907	35.156	0.066704					134	43	5	0	0	0	0.3641	1	6654	6654		10.074	0	1	3019600	+		60578	15239	34818	34819	73816	73816					0.09467192891065679
YVPAVLSEL	9	Unmodified	_YVPAVLSEL_					0	0	0		nc|ENSG00000173610|P0DTE4-1|UGT2A1;ENSG00000173610|ENST00000286604|UGT2A1;nc|ENSG00000173610|P0DTE4-4|UGT2A1	nc|ENSG00000173610|P0DTE4-1|UGT2A1	nc|ENSG00000173610|P0DTE4-1|UGT2A1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	495.7792663574219	2	495.778951	989.543348	0.80959	0.00040138	-0.12771	-6.3314E-05	0.68189	0.00033807	495.77869131891237	78.267	1.2413	78.267	77.878	79.119	0					118	48	4	0	0	0	0.25314	1	20377	20377		15.847	0	1	1561700			60579	12841	34819	34820	73817	73817					0.04815822354464672
YVPAVSCGLV	10	Unmodified	_YVPAVSCGLV_					0	0	0			REV__ENSG00000106624|ENST00000223357|AEBP1	REV__ENSG00000106624|ENST00000223357|AEBP1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	504.28118896484375	2	504.265153	1006.51575	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.704	1	85.788	85.288	86.288	0.084251								0	0	0	0.34755	1	22517	22517		15.847	3.3156	1		+		60580	14529	34820	34821	73818	73818					0.012755958225852737
YVPEIIELI	9	Unmodified	_YVPEIIELI_					0	0	0		nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	nc|ENSG00000156113|Q12791-5|KCNMA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3175659179688	2	544.815533	1087.61651	0.63031	0.0003434	-0.27983	-0.00015245	0.35049	0.00019095	544.8153900618117	90.689	1.1349	90.779	90.008	91.143	0.090668					204	88	4	0	0	0	0.32733	1	23902	23902		4.756	4.756	1	1959000			60581	5220	34821	34822	73819	73819					0.07620951077092286
YVPEPPEV	8	Unmodified	_YVPEPPEV_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	465.2345275878906	2	465.234376	928.454199	0.061313	2.8525E-05	0.077229	3.593E-05	0.13854	6.4455E-05	465.23436452365905	51.54	1.2611	51.54	51.006	52.267	0					134	46	4	0	0	0	0.15515	2	11999	11999;12152		50.855	8.7605	1	9916900			60582	6578	34822	34823	73820;73821	73820					-0.012890126050479012
YVPEPPEV	8	Unmodified	_YVPEPPEV_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	465.2345275878906	2	465.234376	928.454199	0.0089525	4.165E-06	0.16348	7.6055E-05	0.17243	8.022E-05	465.2344000684501	51.5	1.2393	51.546	51.011	52.25	0.046577					133	45	4	0	0	0	0.20518	1	11994	11994		42.095	0	1	10097000			60583	6578	34822	34823	73822	73822					-0.012890126050479012
YVPEPPEV	8	Unmodified	_YVPEPPEV_					0	0	0		ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	465.2344055175781	2	465.234376	928.454199	0.18031	8.3887E-05	-0.0097375	-4.5302E-06	0.17057	7.9357E-05	465.23430675346333	51.571	1.508	51.581	50.913	52.421	0.0095673					153	56	4	0	0	0	0.050494	1	12052	12052		77.984	0	1	9828000			60584	6578	34822	34823	73823	73823					-0.012890126050479012
YVPFNVTVL	9	Unmodified	_YVPFNVTVL_					0	0	0		ENST00000261758.5_1_15:81270755-81270941:-|nuORF	ENST00000261758.5_1_15:81270755-81270941:-|nuORF	ENST00000261758.5_1_15:81270755-81270941:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.783935546875	2	526.294768	1050.57498	0.033319	1.7536E-05	-3.0376	-0.0015987	-3.0043	-0.0015811	526.293413700405	61.784	0.36118	61.881	61.759	62.12	0.096985					16	12	2	0	0	0	0.22596	1	15254	15254		21.747	3.6117	1	115260			60585	8976	34823	34824	73824	73824					0.05171815108406008
YVPFPLTSF	9	Unmodified	_YVPFPLTSF_					0	0	0			REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	536.77294921875	2	535.781493	1069.54843	0.46679	0.0002501	0.21406	0.00011469	0.68085	0.00036479	535.7823981999293	80.166	0.77029	80.166	79.742	80.513	0					56	28	3	0	0	0	0.20344	1	20810	20810		23.148	7.3012	1	275950	+		60586	16535	34824	34825	73825	73825					0.016441262170928894
YVPFTFHKSL	10	Unmodified	_YVPFTFHKSL_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	413.5583190917969	3	413.557125	1237.64954	0.51794	0.0002142	2.1606	0.00089353	2.6785	0.0011077	413.55784544645206	54.375	0.50212	54.438	54.192	54.694	0.063202					29	18	2	0	0	0	0.33104	1	12935	12935		14.218	5.2419	1	292890	+		60587	18892	34825	34826	73826	73826					0.04022577919795367
YVPIGIVMAP	10	Unmodified	_YVPIGIVMAP_					0	0	0			REV__nc|ENSG00000116514|Q6ZMZ0-3|RNF19B	REV__nc|ENSG00000116514|Q6ZMZ0-3|RNF19B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.31396484375	2	530.298996	1058.58344	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.256	1	65.345	64.845	65.845	0.088882								0	0	0	0.32627	1	16260	16260		24.674	3.1369	1		+		60588	14924	34826	34827	73827	73827					0.05649045753398241
YVPINQRT	8	Unmodified	_YVPINQRT_					0	0	0		ENST00000442234.5_1_13:108861346-108861406:-|nuORF	ENST00000442234.5_1_13:108861346-108861406:-|nuORF	ENST00000442234.5_1_13:108861346-108861406:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	495.7845153808594	2	495.771991	989.529429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.902	1	53.958	53.458	54.458	0.056255								0	0	0	0.32762	1	12761	12761		24.674	0	1				60589	10561	34827	34828	73828	73828					0.03424589646044751
YVPKDTHIF	9	Unmodified	_YVPKDTHIF_					0	0	0			REV__ENSG00000106804|ENST00000223642|C5;REV__CON__Q1A7A4	REV__CON__Q1A7A4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	560.816162109375	2	560.295299	1118.57605	0.42567	0.0002385	-0.31755	-0.00017792	0.10812	6.0581E-05	560.2949293985548	57.148	0.70215	57.148	56.876	57.578	0					63	25	3	0	0	0	0.22596	1	13886	13886		21.747	10.923	1	1243300	+	+	60590	14536;13261	34828	34829	73829	73829					0.021500294773204587
YVPKFETAQL	10	Unmodified	_YVPKFETAQL_					0	0	0		nc|ENSG00000164304|Q8TC20-2|CAGE1;nc|ENSG00000164304|Q8TC20|CAGE1;nc|ENSG00000164304|Q8TC20-3|CAGE1;ENSG00000164304|ENST00000502583|CAGE1;nc|ENSG00000164304|Q8TC20-4|CAGE1	nc|ENSG00000164304|Q8TC20-2|CAGE1	nc|ENSG00000164304|Q8TC20-2|CAGE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3397216796875	2	598.321514	1194.62847	0.47528	0.00028437	0.13574	8.1214E-05	0.61102	0.00036559	598.3217166339273	53.416	0.86798	53.407	53.004	53.872	-0.0096092					74	32	3	0	0	0	0.27248	2	12685	12685;12694		23.79	6.8475	1	1153600			60591	5824	34829	34830	73830;73831	73830					0.03894567820270822
YVPLEVGVV	9	Unmodified	_YVPLEVGVV_					0	0	0			REV__ENST00000471795.1_1_X:129483237-129498727:+|nuORF	REV__ENST00000471795.1_1_X:129483237-129498727:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	487.7906494140625	2	487.781493	973.548434	0.27807	0.00013564	0.076777	3.745E-05	0.35484	0.00017309	487.7813842557898	71.297	0.47868	71.357	71.179	71.658	0.060783					22	16	2	0	0	0	0.30623	1	18175	18175		7.9102	0	1	278780	+		60592	14303	34830	34831	73832	73832					0.06060126217107609
YVPLLPAP	8	Unmodified	_YVPLLPAP_					0	0	0			REV__GGT7|p.Q511Lfs*68|1|0.09|ENSG00000131067|chr20:34852210-34852211|-/TCTAGTATAAGGAA|frameshift_variant	REV__GGT7|p.Q511Lfs*68|1|0.09|ENSG00000131067|chr20:34852210-34852211|-/TCTAGTATAAGGAA|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	434.7800598144531	2	435.260197	868.50584	-0.019548	-8.5086E-06	-4.0806	-0.0017761	-4.1001	-0.0017846	435.2584370223171	30.711	0.25733	30.739	30.552	30.81	0.027946					13	8	2	0	0	0	0.34297	1	5633	5633		0.79363	0	1	82408	+		60593	15499	34831	34832	73833	73833					0.0663277587950688
YVPNGSFEW	9	Unmodified	_YVPNGSFEW_					0	0	0			REV__nc|ENSG00000196730|P53355-3|DAPK1	REV__nc|ENSG00000196730|P53355-3|DAPK1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.7593994140625	2	549.748182	1097.48181	0.71682	0.00039407	0.78617	0.0004322	1.503	0.00082627	550.2498144579898	78.534	0.75238	78.534	78.328	79.08	0					38	29	2	0	0	0	0.25202	1	20263	20263		6.7232	0	1	70738	+		60594	18683	34832	34833	73834	73834					-0.0630310934479894
YVPPEKLKLL	10	Unmodified	_YVPPEKLKLL_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000488719.1_1_22:30975561-30975981:-|nuORF	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.8013916015625	2	600.373549	1198.73255	NaN	NaN	NaN	NaN	NaN	NaN	NaN	87.932	1	87.932	87.432	88.432	0								0	0	0	0.3808	1	23206	23206		1.8442	0	1				60595	1519	34833	34834	73835	73835					0.14112894647792018
YVPQMQQQ	8	Unmodified	_YVPQMQQQ_					0	0	0		nc|ENSG00000101901|Q9NP73-4|ALG13;nc|ENSG00000101901|Q9NP73-3|ALG13;ENSG00000101901|ENST00000394780|ALG13	nc|ENSG00000101901|Q9NP73-4|ALG13	nc|ENSG00000101901|Q9NP73-4|ALG13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	510.83746337890625	2	511.242209	1020.46987	0.11861	6.0637E-05	-3.331	-0.001703	-3.2124	-0.0016423	511.2402909268452	39.338	0.5269	39.431	39.251	39.777	0.09267					29	18	2	0	0	0	0.34185	1	8367	8367		10.183	4.9527	1	217980			60596	1727	34834	34835	73836	73836					-0.039550493596379965
YVPRSYAII	9	Unmodified	_YVPRSYAII_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.3299560546875	2	541.305667	1080.59678	0.78485	0.00042484	0.55722	0.00030163	1.3421	0.00072647	541.3057192839451	47.17	0.47984	47.17	46.961	47.44	0					32	16	3	0	0	0	0.25291	1	10757	10757		2.3027	0	1	540070	+		60597	14227	34835	34836	73837	73837					0.059706198569983826
YVPVCSGASTS	11	Unmodified	_YVPVCSGASTS_					0	0	0		ENSG00000221859|ENST00000380095|KRTAP10-10	ENSG00000221859|ENST00000380095|KRTAP10-10	ENSG00000221859|ENST00000380095|KRTAP10-10	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.8219604492188	2	535.744782	1069.47501	0.64559	0.00034587	-0.97533	-0.00052253	-0.32974	-0.00017666	536.245511052727	56.951	0.27721	56.932	56.865	57.142	-0.019081					13	9	2	0	0	0	0.29591	1	13709	13709		25.399	9.6311	1	112030			60598	8425	34836	34837	73838	73838					-0.05694790287680007
YVQARPRR	8	Unmodified	_YVQARPRR_					0	0	0		ENST00000412091.1_2_7:65958297-65958540:-|nuORF	ENST00000412091.1_2_7:65958297-65958540:-|nuORF	ENST00000412091.1_2_7:65958297-65958540:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	522.75927734375	2	523.304324	1044.5941	-0.47132	-0.00024664	2.4945	0.0013054	2.0232	0.0010587	523.3055702722659	34.436	0.38358	34.511	34.273	34.657	0.075306					23	13	2	0	0	0	0.34218	1	6758	6758		9.3474	2.0582	1	120680			60599	10274	34837	34838	73839	73839					0.07358209242693192
YVQELTAAF	9	Unmodified	_YVQELTAAF_					0	0	0			REV__ENSG00000148154|ENST00000374279|UGCG	REV__ENSG00000148154|ENST00000374279|UGCG	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.8291015625	2	521.266207	1040.51786	0.3987	0.00020783	-0.40498	-0.0002111	-0.0062725	-3.2696E-06	521.2661047218052	57.915	0.33157	57.915	57.768	58.1	0					14	11	2	0	0	0	0.24311	1	14064	14064		16.942	1.1741	1	126910	+		60600	16415	34838	34839	73840	73840					-0.0007765216796542518
YVQELTAAF	9	Unmodified	_YVQELTAAF_					0	0	0			REV__ENSG00000148154|ENST00000374279|UGCG	REV__ENSG00000148154|ENST00000374279|UGCG	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	521.266207	1040.51786	0.4167	0.00021721	-0.12252	-6.3865E-05	0.29418	0.00015334	521.7675403872762	57.682	0.15334	57.767	57.686	57.84	0.085621	-0.073981	8.2269E-05	NaN	7.2892	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148980	+		60601	16415	34838	34839							-0.0007765216796542518
YVQFFLADAL	10	Unmodified	_YVQFFLADAL_					0	0	0		ENSG00000178971|ENST00000651323|CTC1;nc|ENSG00000178971|Q2NKJ3-2|CTC1;ENST00000578240.1_1_17:8133610-8135926:-|nuORF	ENSG00000178971|ENST00000651323|CTC1	ENSG00000178971|ENST00000651323|CTC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	594.2669677734375	2	593.810782	1185.60701	0.53389	0.00031703	0.16181	9.6084E-05	0.6957	0.00041311	593.8106891810787	72.346	1.5269	72.346	71.664	73.191	0					95	55	2	0	0	0	0.28569	1	18436	18436		26.268	2.2476	1	231690			60602	7092	34839	34840	73841	73841					0.02163182791559848
YVQFFLADAL	10	Unmodified	_YVQFFLADAL_					0	0	0		ENSG00000178971|ENST00000651323|CTC1;nc|ENSG00000178971|Q2NKJ3-2|CTC1;ENST00000578240.1_1_17:8133610-8135926:-|nuORF	ENSG00000178971|ENST00000651323|CTC1	ENSG00000178971|ENST00000651323|CTC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.2667236328125	2	593.810782	1185.60701	0.56717	0.00033679	-0.13951	-8.2844E-05	0.42765	0.00025395	593.810532689605	72.333	1.492	72.39	71.628	73.12	0.056572					93	54	2	0	0	0	0.28569	1	18415	18415		26.268	2.2476	1	306120			60603	7092	34839	34840	73842	73842					0.02163182791559848
YVQFFLADAL	10	Unmodified	_YVQFFLADAL_					0	0	0		ENSG00000178971|ENST00000651323|CTC1;nc|ENSG00000178971|Q2NKJ3-2|CTC1;ENST00000578240.1_1_17:8133610-8135926:-|nuORF	ENSG00000178971|ENST00000651323|CTC1	ENSG00000178971|ENST00000651323|CTC1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2670288085938	2	593.810782	1185.60701	0.51933	0.00030838	0.18608	0.0001105	0.70541	0.00041888	593.8107226622527	72.599	1.5007	72.57	71.6	73.101	-0.029297					95	53	2	0	0	0	0.28569	1	18448	18448		26.268	5.8536	1	253110			60604	7092	34839	34840	73843	73843					0.02163182791559848
YVQIRHGGFRK	11	Unmodified	_YVQIRHGGFRK_					0	0	0			REV__ENSG00000198743|ENST00000381151|SLC5A3	REV__ENSG00000198743|ENST00000381151|SLC5A3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	453.8836364746094	3	454.258072	1359.75239	0.17083	7.7603E-05	-1.8091	-0.0008218	-1.6383	-0.0007442	454.25735963493133	30.638	0.19833	30.666	30.58	30.778	0.027946					9	6	2	0	0	0	0.3322	1	5662	5662		4.7159	1.1289	1	47725	+		60605	18853	34840	34841	73844	73844					0.08690083431110907
YVQNPLNAF	9	Unmodified	_YVQNPLNAF_					0	0	0			REV__ENST00000475109.5_1_7:35840829-35903188:+|nuORF	REV__ENST00000475109.5_1_7:35840829-35903188:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7716674804688	2	533.271824	1064.5291	0.36994	0.00019728	-2.3855	-0.0012721	-2.0155	-0.0010748	533.7715138693068	70.349	0.75908	70.409	70.096	70.855	0.060783					42	26	2	0	0	0	0.193	1	17871	17871		24.674	1.5255	1	847290	+		60606	15161	34841	34842	73845	73845					-0.0005883007381726202
YVQNPLNAF	9	Unmodified	_YVQNPLNAF_					0	0	0			REV__ENST00000475109.5_1_7:35840829-35903188:+|nuORF	REV__ENST00000475109.5_1_7:35840829-35903188:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	533.271824	1064.5291	0.51495	0.00027461	-2.4322	-0.001297	-1.9173	-0.0010224	533.7714508008333	70.356	0.8483	70.356	69.999	70.847	0	-0.02696	-2.8771E-05	NaN	24.674	50	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	776670	+		60607	15161	34841	34842							-0.0005883007381726202
YVQNPLNAF	9	Unmodified	_YVQNPLNAF_					0	0	0			REV__ENST00000475109.5_1_7:35840829-35903188:+|nuORF	REV__ENST00000475109.5_1_7:35840829-35903188:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	533.271824	1064.5291	0.36994	0.00019728	-2.3855	-0.0012721	-2.0155	-0.0010748	533.7715138693068	70.349	0.75908	70.409	70.096	70.855	0.060783	0.02696	2.1078E-05	NaN	24.674	42	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	847290	+		60608	15161	34841	34842							-0.0005883007381726202
YVQSRPPFK	9	Unmodified	_YVQSRPPFK_					0	0	0		nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	nc|ENSG00000137261|Q5VV43-4|KIAA0319	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.2905883789062	2	561.308741	1120.60293	0.25894	0.00014535	-0.71145	-0.00039934	-0.45251	-0.000254	561.3082797804489	39.501	0.47028	39.6	39.292	39.762	0.099407					24	16	2	0	0	0	0.079752	1	8354	8354		41.84	25.992	1	145470			60609	4037	34842	34843	73846	73846					0.047451380885149774
YVQYYPIVVF	10	Unmodified	_YVQYYPIVVF_					0	0	0		nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3	nc|ENSG00000105289|O95049-5|TJP3	nc|ENSG00000105289|O95049-5|TJP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	431.5667419433594	3	430.897147	1289.66961	0.015988	6.8892E-06	0.25424	0.00010955	0.27023	0.00011644	431.23178905657556	37.832	0.6001	37.923	37.609	38.209	0.090881					33	21	2	0	0	0	0.31696	1	7804	7804		10.151	0.38632	1	228560			60610	1963	34843	34844	73847	73847					0.036363288597158316
YVRACMKYGF	10	Unmodified	_YVRACMKYGF_					0	0	0			REV__nc|ENSG00000131323|Q13114-2|TRAF3	REV__nc|ENSG00000131323|Q13114-2|TRAF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.81103515625	2	619.296462	1236.57837	0.42943	0.00026595	-2.1699	-0.0013438	-1.7404	-0.0010778	619.2952174614327	54.768	0.32111	54.831	54.642	54.963	0.063202					18	11	2	0	0	0	0.31267	1	13038	13038		14.838	4.0143	1	386430	+		60611	15505	34844	34845	73848	73848					-0.03045581380888507
YVRACMKYGF	10	Unmodified	_YVRACMKYGF_					0	0	0			REV__nc|ENSG00000131323|Q13114-2|TRAF3	REV__nc|ENSG00000131323|Q13114-2|TRAF3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.8106689453125	2	619.296462	1236.57837	0.40204	0.00024898	0.30944	0.00019163	0.71147	0.00044061	619.7978961976432	54.954	0.16914	55.017	54.963	55.132	0.063206					8	5	2	0	0	0	0.31629	1	13089	13089		10.074	1.9184	1	174400	+		60612	15505	34844	34845	73849	73849					-0.03045581380888507
YVRADVELERI	11	Unmodified	_YVRADVELERI_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;ENST00000510711.5_1_5:38971963-39074479:-|nuORF;RICTOR|p.Q506Rfs*24|1|0.32|ENSG00000164327|chr5:38962925-38962925|T/-|frameshift_variant	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	455.2520446777344	3	454.917381	1361.73031	-0.026928	-1.225E-05	0.33479	0.0001523	0.30787	0.00014005	454.91749186379434	23.089	0.88837	23.001	22.685	23.573	-0.087608					90	31	4	0	0	0	0.44088	1	3312	3312		5.8681	0.46543	1	849740			60613	5831	34845	34846	73850	73850					0.06391814172002341
YVRADVELERI	11	Unmodified	_YVRADVELERI_					0	0	0		ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;ENST00000510711.5_1_5:38971963-39074479:-|nuORF;RICTOR|p.Q506Rfs*24|1|0.32|ENSG00000164327|chr5:38962925-38962925|T/-|frameshift_variant	ENSG00000164327|ENST00000357387|RICTOR	ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	454.917724609375	3	454.917381	1361.73031	0.087722	3.9906E-05	0.072483	3.2974E-05	0.1602	7.288E-05	454.9173164646096	23.137	0.7666	23.092	22.789	23.556	-0.044867					99	27	5	0	0	0	0.33296	1	3306	3306		2.6312	0.19645	1	857300			60614	5831	34845	34846	73851	73851					0.06391814172002341
YVRAFPLV	8	Unmodified	_YVRAFPLV_					0	0	0		ENST00000460477.1_1_7:45956706-45960430:-|nuORF	ENST00000460477.1_1_7:45956706-45960430:-|nuORF	ENST00000460477.1_1_7:45956706-45960430:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.78411865234375	2	482.78437	963.554188	0.32018	0.00015458	0.33095	0.00015978	0.65113	0.00031435	482.78451689465476	66.138	1.8044	66.124	65.556	67.36	-0.013588					161	64	3	0	0	0	0.43043	1	16699	16699		12.532	0	1	13385000			60615	10731	34846	34847	73852	73852					0.07095269519425074
YVRDRADLN	9	Unmodified	_YVRDRADLN_					0	0	0		nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-4|ETS1	nc|ENSG00000134954|P14921|ETS1	nc|ENSG00000134954|P14921|ETS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	560.8057250976562	2	561.288537	1120.56252	0.35196	0.00019755	-3.5024	-0.0019659	-3.1505	-0.0017683	561.2876044539514	72.236	0.59595	72.208	71.738	72.334	-0.027275					39	21	3	0	0	0	0.1854	1	18270	18270		25.399	0	1	160010			60616	3831	34847	34848	73853	73853					0.007061716981070276
YVRGRPGP	8	Unmodified	_YVRGRPGP_					0	0	0		ENST00000555647.5_3_14:75388227-75389943:-|nuORF;ENST00000555834.5_1_14:75375979-75389943:-|nuORF	ENST00000555647.5_3_14:75388227-75389943:-|nuORF	ENST00000555647.5_3_14:75388227-75389943:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	450.5701599121094	2	451.253769	900.492984	0.25804	0.00011644	-0.85736	-0.00038689	-0.59932	-0.00027044	451.2532760356891	30.286	0.85934	30.286	30.088	30.948	0					49	30	2	0	0	0	0.34185	1	5717	5717		10.183	0.83596	1	472060			60617	11847	34848	34849	73854	73854					0.03875757539992719
YVRKLVWVPWL	11	Unmodified	_YVRKLVWVPWL_					0	0	0		Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|54|3|anti-sense	Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|54|3|anti-sense	Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|54|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.95892333984375	3	486.958852	1457.85473	0.23258	0.00011326	-0.043908	-2.1381E-05	0.18868	9.1877E-05	486.95881169722736	91.889	1.4404	91.889	91.239	92.679	0					418	105	5	0	0	0	0.48212	1	24553	24553		0.45452	0.45452	1	1493600			60618	12389	34849	34850	73855	73855					0.1441135645002305
YVRKLVWVPWL	11	Unmodified	_YVRKLVWVPWL_					0	0	0		Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|54|3|anti-sense	Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|54|3|anti-sense	Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|54|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	486.9589538574219	3	486.958852	1457.85473	0.14008	6.8214E-05	0.14014	6.824E-05	0.28022	0.00013645	486.9589688168156	93.789	3.2777	93.789	92.641	95.919	0					884	291	6	0	0	0	0.47545	4	24713	24673;24713;24792;25323		1.3296	1.3296	1	3798700			60619	12389	34849	34850	73856;73857;73858;73859	73857					0.1441135645002305
YVRKLVWVPWL	11	Unmodified	_YVRKLVWVPWL_					0	0	0		Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|54|3|anti-sense	Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|54|3|anti-sense	Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|54|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	486.9590148925781	3	486.958852	1457.85473	0.26648	0.00012976	-0.011268	-5.4872E-06	0.25521	0.00012428	486.95878676955243	91.799	1.5704	91.89	91.179	92.749	0.090668					332	108	4	0	0	0	0.47633	2	24628	24590;24628		1.2148	0.70888	1	2274200			60620	12389	34849	34850	73860;73861	73861					0.1441135645002305
YVRKLVWVPWL	11	Unmodified	_YVRKLVWVPWL_					0	0	0		Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|54|3|anti-sense	Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|54|3|anti-sense	Harlequin-int_dup65|chr1:171600924-171601846:+|1.3325358597716204|0.0155944728126253|6.42|519.0|54|3|anti-sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	486.9588928222656	3	486.958852	1457.85473	0.41907	0.00020407	-0.063795	-3.1066E-05	0.35528	0.00017301	486.9588875546509	93.387	3.8528	93.386	92.677	96.53	-0.00051117					1071	343	5	0	0	0	0.48212	1	25326	25326		0.45452	0.45452	1	4732600			60621	12389	34849	34850	73862	73862					0.1441135645002305
YVRMKYLF	8	Unmodified	_YVRMKYLF_					0	0	0		nc|ENSG00000154511|Q5T7M9-2|DIPK1A;ENSG00000154511|ENST00000370310|DIPK1A	nc|ENSG00000154511|Q5T7M9-2|DIPK1A	nc|ENSG00000154511|Q5T7M9-2|DIPK1A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.7572021484375	2	560.304613	1118.59467	0.30722	0.00017214	1.9507	0.001093	2.2579	0.0012651	560.3056788263834	62.919	0.29164	62.919	62.747	63.039	0					15	10	2	0	0	0	0.32778	1	15506	15506		20.871	1.4322	1	86738			60622	5134	34850	34851	73863	73863					0.04011867847520989
YVRNELPY	8	Unmodified	_YVRNELPY_					0	0	0			REV__nc|ENSG00000182220|O75787-2|ATP6AP2	REV__nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.2236328125	2	527.271824	1052.5291	1.0507	0.00055399	-2.191	-0.0011553	-1.1404	-0.00060128	527.2704834856258	55.934	0.36475	55.934	55.628	55.992	0					16	12	2	0	0	0	0.34218	1	13381	13381		9.3474	3.1417	1	176390	+		60623	23118	34851	34852	73864	73864					0.0049316992619878874
YVRRQQRSL	9	Unmodified	_YVRRQQRSL_					0	0	0			REV__nc|ENSG00000160803|Q9NRR5-2|UBQLN4	REV__nc|ENSG00000160803|Q9NRR5-2|UBQLN4	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.3474731445312	2	603.34672	1204.67889	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.833	1	94.831	94.331	95.331	-0.0020142								0	0	0	0.2489	1	25313	25313		6.7232	1.9672	1		+		60624	23053	34852	34853	73865	73865					0.08473534988661413
YVRRRRPI	8	Unmodified	_YVRRRRPI_					0	0	0		ENST00000529111.5_1_11:83344252-84634162:-|nuORF;nc|ENSG00000150672|Q15700-3|DLG2;nc|ENSG00000150672|Q15700|DLG2;nc|ENSG00000150672|Q15700-4|DLG2;ENSG00000150672|ENST00000376104|DLG2	ENST00000529111.5_1_11:83344252-84634162:-|nuORF	ENST00000529111.5_1_11:83344252-84634162:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	558.3320922851562	2	558.349066	1114.68358	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.335	1	47.389	46.889	47.889	0.054371								0	0	0	0.36961	1	10730	10730		5.7604	1.0044	1				60625	4921	34853	34854	73866	73866					0.1308246392206911
YVRRSNQSIF	10	Unmodified	_YVRRSNQSIF_					0	0	0		ENST00000503698.1_1_5:38954866-38959404:-|nuORF	ENST00000503698.1_1_5:38954866-38959404:-|nuORF	ENST00000503698.1_1_5:38954866-38959404:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.245849609375	3	423.894799	1268.66257	-0.05444	-2.3077E-05	-1.0076	-0.0004271	-1.062	-0.00045018	423.89459469142184	24.446	0.1799	24.374	24.207	24.387	-0.072559					6	5	2	0	0	0	0.32051	1	3706	3706		3.8763	0.28927	1	23139			60626	11294	34854	34855	73867	73867					0.03898409031899064
YVRRWSRWFRK	11	Unmodified	_YVRRWSRWFRK_					0	0	0			REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF	REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.8089599609375	3	547.307537	1638.90078	0.0931	5.0954E-05	-0.98295	-0.00053797	-0.88985	-0.00048702	547.30702954364	34.373	0.56501	34.373	34.023	34.588	0					34	19	3	0	0	0	0.33351	1	6731	6731		0.094841	0	1	153570	+		60627	21521	34855	34856	73868	73868					0.1068881440480709
YVRRWSRWFRK	11	Unmodified	_YVRRWSRWFRK_					0	0	0			REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF	REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	410.2364807128906	4	410.732472	1638.90078	-0.045643	-1.8747E-05	-1.1405	-0.00046843	-1.1861	-0.00048718	410.98281929557737	34.127	0.61212	34.193	33.983	34.595	0.06636					57	21	3	0	0	0	0.33352	1	6641	6641		0.08335	0.08335	1	254850	+		60628	21521	34855	34856	73869	73869					0.1068881440480709
YVRRWSRWFRK	11	Unmodified	_YVRRWSRWFRK_					0	0	0			REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF	REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	410.2362060546875	4	410.732472	1638.90078	-0.037285	-1.5314E-05	-1.0005	-0.00041092	-1.0377	-0.00042624	410.9829167276574	34.13	0.52458	34.197	33.939	34.463	0.0667					42	18	3	0	0	0	0.33351	1	6679	6679		0.094841	0.021578	1	220070	+		60629	21521	34855	34856	73870	73870					0.1068881440480709
YVRRWSRWFRK	11	Unmodified	_YVRRWSRWFRK_					0	0	0			REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF	REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		4	410.732472	1638.90078	-0.37688	-0.0001548	-1.1133	-0.00045725	-1.4901	-0.00061205	410.73212083579205	34.286	0.64869	34.286	34.023	34.672	0	0.060924	-3.1878E-05	NaN	0.094841	57	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212010	+		60630	21521	34855	34856							0.1068881440480709
YVSALTGIY	9	Unmodified	_YVSALTGIY_					0	0	0			REV__nc|ENSG00000100280|Q10567-4|AP1B1	REV__nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	493.76263427734375	2	493.7633	985.512048	0.35263	0.00017411	-1.304	-0.00064388	-0.95139	-0.00046976	493.7627301907477	67.189	0.67972	67.189	66.856	67.536	0					47	23	3	0	0	0	0.1669	1	16872	16872		28.487	1.6032	1	366920	+		60631	14175	34856	34857	73871	73871					0.018712493203679514
YVSALTGIY	9	Unmodified	_YVSALTGIY_					0	0	0			REV__nc|ENSG00000100280|Q10567-4|AP1B1	REV__nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	493.7626647949219	2	493.7633	985.512048	0.33288	0.00016436	-1.244	-0.00061423	-0.9111	-0.00044987	493.7628715614421	67.073	0.5612	67.151	66.847	67.408	0.078041					32	19	2	0	0	0	0.072844	1	16816	16816		44.407	13.77	1	298750	+		60632	14175	34856	34857	73872	73872					0.018712493203679514
YVSALTGIY	9	Unmodified	_YVSALTGIY_					0	0	0			REV__nc|ENSG00000100280|Q10567-4|AP1B1	REV__nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	493.7633	985.512048	0.35263	0.00017411	-1.304	-0.00064388	-0.95139	-0.00046976	493.7627301907477	67.189	0.67972	67.189	66.856	67.536	0	0.016474	-0.00020899	NaN	44.407	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366920	+		60633	14175	34856	34857							0.018712493203679514
YVSALTGIY	9	Unmodified	_YVSALTGIY_					0	0	0			REV__nc|ENSG00000100280|Q10567-4|AP1B1	REV__nc|ENSG00000100280|Q10567-4|AP1B1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	493.7633	985.512048	0.33288	0.00016436	-1.244	-0.00061423	-0.9111	-0.00044987	493.7628715614421	67.073	0.5612	67.151	66.847	67.408	0.078041	-0.022202	-0.00014971	NaN	44.407	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298750	+		60634	14175	34856	34857							0.018712493203679514
YVSCQESKDSV	11	Unmodified	_YVSCQESKDSV_					0	0	0			REV__ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	REV__ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	415.5204162597656	3	415.520299	1243.53907	0.025238	1.0487E-05	-0.026351	-1.0949E-05	-0.0011133	-4.6259E-07	415.52044907865	50.027	0.72555	50.027	49.819	50.544	0					89	26	4	0	0	0	0.41517	1	11540	11540		9.2438	0	1	1591000	+		60635	16360	34857	34858	73873	73873					-0.07296054921403083
YVSCQESKDSV	11	Unmodified	_YVSCQESKDSV_					0	0	0			REV__ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	REV__ZAN|p.N2422Mfs*32|1|0.26|ENSG00000146839|chr7:100789253-100789253|A/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	415.5205993652344	3	415.520299	1243.53907	0.56626	0.00023529	-0.45723	-0.00018999	0.10904	4.5307E-05	415.5202073015421	50.055	0.93859	50.076	49.802	50.74	0.020691					89	34	4	0	0	0	0.43809	1	11520	11520		6.2344	6.2344	1	1292500	+		60636	16360	34857	34858	73874	73874					-0.07296054921403083
YVSDKGDYKI	10	Unmodified	_YVSDKGDYKI_					0	0	0			REV__SPIN4|p.L167Pfs*2|1|0.05|ENSG00000186767|chrX:63350319-63350320|CA/-|frameshift_variant	REV__SPIN4|p.L167Pfs*2|1|0.05|ENSG00000186767|chrX:63350319-63350320|CA/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.3028564453125	2	594.300778	1186.587	1.0961	0.00065139	0.85765	0.0005097	1.9537	0.0011611	594.3013485722437	56.505	0.6226	56.486	56.187	56.809	-0.019077					28	22	2	0	0	0	0.30872	1	13575	13575		19.362	4.9566	1	626010	+		60637	18467	34858	34859	73875	73875					0.001173870609363803
YVSEKASPQ	9	Unmodified	_YVSEKASPQ_					0	0	0			REV__ENST00000372827.7_1_1:40224173-40224701:-|nuORF	REV__ENST00000372827.7_1_1:40224173-40224701:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	504.7543029785156	2	504.753464	1007.49238	0.52802	0.00026652	0.72129	0.00036407	1.2493	0.00063059	504.753896099538	20.03	0.57547	19.975	19.624	20.199	-0.055693					45	20	3	0	0	0	0.27726	1	2384	2384		12.241	0	1	134500	+		60638	20422	34859	34860	73876	73876					-0.011071266903741162
YVSFPLEL	8	Unmodified	_YVSFPLEL_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	484.26116943359375	2	484.260394	966.506234	0.46791	0.00022659	0.83966	0.00040662	1.3076	0.00063321	484.2609678708479	84.454	0.47235	84.531	84.274	84.747	0.077095					29	18	2	0	0	0	0.19197	1	22106	22106		44.407	24.968	1	197940			60639	3157	34860	34861	73877	73877					0.021641508087100192
YVSFPLEL	8	Unmodified	_YVSFPLEL_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	484.260394	966.506234	0.45933	0.00022243	0.68682	0.0003326	1.1461	0.00055503	484.2608322435787	84.514	0.56699	84.514	84.256	84.823	0	-0.005487	7.9386E-05	NaN	44.407	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329160			60640	3157	34860	34861							0.021641508087100192
YVSFPLEL	8	Unmodified	_YVSFPLEL_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	484.260394	966.506234	0.49378	0.00023912	0.16403	7.9433E-05	0.65781	0.00031855	484.26056004657244	84.526	0.47972	84.513	84.283	84.762	-0.012833	-0.006597	-0.00042694	NaN	44.407	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224990			60641	3157	34860	34861							0.021641508087100192
YVSHQMSKGM	10	Unmodified	_YVSHQMSKGM_					0	0	0			REV__ENST00000463586.1_1_1:171481117-171481318:+|nuORF	REV__ENST00000463586.1_1_1:171481117-171481318:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	584.2689208984375	2	584.267901	1166.52125	0.44968	0.00026273	0.40665	0.00023759	0.85632	0.00050032	584.2680868187355	20.374	0.74129	20.264	19.958	20.699	-0.11003					40	26	2	0	0	0	0.40262	1	2530	2530		2.9952	0.26005	1	170930	+		60642	20589	34861	34862	73878	73878					-0.055350486572478985
YVSLDQPVT	9	Unmodified	_YVSLDQPVT_					0	0	0		nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	511.2997741699219	2	511.263665	1020.51278	0.57135	0.00029211	-0.015027	-7.683E-06	0.55632	0.00028442	511.2635942396516	78.905	0.4108	78.905	78.669	79.08	0					26	16	2	0	0	0	0.20651	1	20436	20436		26.884	1.4843	1	170020			60643	5975	34862	34863	73879	73879					0.003340439694284214
YVSLDQPVT	9	Unmodified	_YVSLDQPVT_					0	0	0		nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	511.263665	1020.51278	0.5556	0.00028406	-0.42092	-0.0002152	0.13468	6.8857E-05	511.2635559151591	78.958	0.36305	78.928	78.715	79.078	-0.030434	0.021047	-0.00038725	NaN	26.884	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83326			60644	5975	34862	34863							0.003340439694284214
YVSLSLLIS	9	Unmodified	_YVSLSLLIS_					0	0	0		ENST00000461010.5_2_6:42975158-42975209:+|nuORF	ENST00000461010.5_2_6:42975158-42975209:+|nuORF	ENST00000461010.5_2_6:42975158-42975209:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	497.7962951660156	2	497.794601	993.574648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.466	1	43.466	42.966	43.966	0								0	0	0	0.24311	1	9551	9551		8.5933	0	1				60645	10741	34863	34864	73880	73880					0.07760395388584129
YVSPKSLSP	9	Unmodified	_YVSPKSLSP_					0	0	0			REV__ENST00000409923.5_1_7:23016960-23017008:-|nuORF	REV__ENST00000409923.5_1_7:23016960-23017008:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	489.2686767578125	2	489.26875	976.522947	0.41548	0.00020328	0.6451	0.00031563	1.0606	0.00051891	489.26897722510984	36.204	1.0368	36.204	35.719	36.756	0					84	37	3	0	0	0	0.12642	1	7398	7398		34.402	8.1336	1	1260600	+		60646	15162	34864	34865	73881	73881					0.03374651694673503
YVSPKSLSP	9	Unmodified	_YVSPKSLSP_					0	0	0			REV__ENST00000409923.5_1_7:23016960-23017008:-|nuORF	REV__ENST00000409923.5_1_7:23016960-23017008:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	489.268798828125	2	489.26875	976.522947	0.44664	0.00021853	0.67901	0.00033222	1.1256	0.00055074	489.2689829237148	36.02	0.9407	36.102	35.71	36.651	0.082355					86	33	4	0	0	0	0.063853	1	7352	7352		47.749	13.347	1	1522800	+		60647	15162	34864	34865	73882	73882					0.03374651694673503
YVSPKSLSP	9	Unmodified	_YVSPKSLSP_					0	0	0			REV__ENST00000409923.5_1_7:23016960-23017008:-|nuORF	REV__ENST00000409923.5_1_7:23016960-23017008:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2687683105469	2	489.26875	976.522947	0.52644	0.00025757	-0.45873	-0.00022444	0.067714	3.313E-05	489.2688728115856	35.997	1.0357	36.083	35.645	36.68	0.086246					84	36	3	0	0	0	0.088443	1	7329	7329		39.95	12.321	1	1467300	+		60648	15162	34864	34865	73883	73883					0.03374651694673503
YVSQADEQTL	10	Unmodified	_YVSQADEQTL_					0	0	0			REV__ENSG00000157131|ENST00000361249|C8A	REV__ENSG00000157131|ENST00000361249|C8A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.2725830078125	2	577.272218	1152.52988	0.13785	7.9577E-05	0.7791	0.00044975	0.91695	0.00052933	577.2726725548837	27.168	0.68999	27.168	26.925	27.615	0					41	23	2	0	0	0	0.36786	1	4563	4563		9.3831	1.2276	1	442740	+		60649	16774	34865	34866	73884	73884					-0.04028080215425689
YVSQADEQTL	10	Unmodified	_YVSQADEQTL_					0	0	0			REV__ENSG00000157131|ENST00000361249|C8A	REV__ENSG00000157131|ENST00000361249|C8A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.2730102539062	2	577.272218	1152.52988	0.33282	0.00019213	0.55814	0.0003222	0.89096	0.00051433	577.2726910034628	24.326	0.84613	24.253	24.055	24.901	-0.072559					80	28	4	0	0	0	0.36786	1	3676	3676		9.3831	1.473	1	1016700	+		60650	16774	34865	34866	73885	73885					-0.04028080215425689
YVSQADEQTL	10	Unmodified	_YVSQADEQTL_					0	0	0			REV__ENSG00000157131|ENST00000361249|C8A	REV__ENSG00000157131|ENST00000361249|C8A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.2727661132812	2	577.272218	1152.52988	0.17901	0.00010334	0.59893	0.00034575	0.77795	0.00044909	577.2725905039414	27.171	0.63125	27.15	26.897	27.528	-0.021412					51	21	4	0	0	0	0.3258	2	4556	4556;4607		17.113	1.473	1	481750	+		60651	16774	34865	34866	73886;73887	73886					-0.04028080215425689
YVSQADEQTL	10	Unmodified	_YVSQADEQTL_					0	0	0			REV__ENSG00000157131|ENST00000361249|C8A	REV__ENSG00000157131|ENST00000361249|C8A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.2730712890625	2	577.272218	1152.52988	0.16271	9.393E-05	0.64818	0.00037418	0.8109	0.00046811	577.2727802099769	24.314	0.9829	24.275	24.081	25.064	-0.038927					80	33	4	0	0	0	0.36786	1	3658	3658		9.3831	1.2276	1	1048500	+		60652	16774	34865	34866	73888	73888					-0.04028080215425689
YVSQADEQTL	10	Unmodified	_YVSQADEQTL_					0	0	0			REV__ENSG00000157131|ENST00000361249|C8A	REV__ENSG00000157131|ENST00000361249|C8A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.2728881835938	2	577.272218	1152.52988	0.16411	9.4734E-05	0.7187	0.00041489	0.88281	0.00050962	577.2725495304446	27.174	0.62642	27.163	26.928	27.555	-0.01156					40	21	2	0	0	0	0.3258	2	4555	4555;4606		17.113	1.473	1	434250	+		60653	16774	34865	34866	73889;73890	73889					-0.04028080215425689
YVSRLHLL	8	Unmodified	_YVSRLHLL_					0	0	0		ENSG00000102302|ENST00000375135|FGD1	ENSG00000102302|ENST00000375135|FGD1	ENSG00000102302|ENST00000375135|FGD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	500.78851318359375	2	500.800552	999.58655	0.30481	0.00015265	0.53176	0.0002663	0.83657	0.00041896	501.30298398339187	82.283	1.0985	82.352	81.65	82.748	0.068993					82	45	3	0	0	0	0.44842	1	21579	21579		6.3541	0	1	170260			60654	1760	34866	34867	73891	73891					0.08674056922438922
YVSRLHLL	8	Unmodified	_YVSRLHLL_					0	0	0		ENSG00000102302|ENST00000375135|FGD1	ENSG00000102302|ENST00000375135|FGD1	ENSG00000102302|ENST00000375135|FGD1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	500.800552	999.58655	0.42747	0.00021408	-3.2295	-0.0016173	-2.802	-0.0014032	500.796861377938	82.212	0.14874	82.212	82.138	82.287	0	-0.070189	-0.0035358	NaN	6.3541	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141920			60655	1760	34866	34867							0.08674056922438922
YVSRMKYHF	9	Unmodified	_YVSRMKYHF_					0	0	0			REV__ENST00000439124.1_1_6:64325734-64326112:-|nuORF	REV__ENST00000439124.1_1_6:64325734-64326112:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.5714416503906	3	410.874459	1229.60155	-0.085303	-3.5049E-05	3.9801	0.0016353	3.8948	0.0016003	410.87610697689144	32.919	0.22786	32.919	32.837	33.065	0					11	7	2	0	0	0	0.25612	1	6355	6355		4.897	0	1	70593	+		60656	21034	34867	34868	73892	73892					-0.004068192719159924
YVSRPSHF	8	Unmodified	_YVSRPSHF_					0	0	0		ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2	ENST00000556539.5_1_12:56737175-56743495:-|nuORF	ENST00000556539.5_1_12:56737175-56743495:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	496.7513122558594	2	496.751059	991.487565	0.19159	9.5175E-05	-0.16529	-8.2109E-05	0.026303	1.3066E-05	496.7509625621595	30.793	0.60606	30.82	30.505	31.111	0.027157					51	21	4	0	0	0	0.3474	1	5722	5722		25.399	12.868	1	235490			60657	6466	34868	34869	73893	73893					-0.00851966042478125
YVSRPSHF	8	Unmodified	_YVSRPSHF_					0	0	0		ENST00000556539.5_1_12:56737175-56743495:-|nuORF;nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2	ENST00000556539.5_1_12:56737175-56743495:-|nuORF	ENST00000556539.5_1_12:56737175-56743495:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	496.751059	991.487565	0.34504	0.0001714	-0.49184	-0.00024432	-0.1468	-7.2923E-05	496.75100384531896	30.836	0.6489	30.836	30.553	31.202	0	0.0080615	-0.00017547	NaN	25.399	59	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288890			60658	6466	34868	34869							-0.00851966042478125
YVSRRFRS	8	Unmodified	_YVSRRFRS_					0	0	0		ENST00000470690.5_1_17:39987086-39988698:-|nuORF	ENST00000470690.5_1_17:39987086-39988698:-|nuORF	ENST00000470690.5_1_17:39987086-39988698:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.7850341796875	2	535.796332	1069.57811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.215	1	58.198	57.698	58.698	-0.0172								0	0	0	0.35466	1	14096	14096		12.532	0.89125	1				60659	10867	34869	34870	73894	73894					0.04610503005801547
YVSRTLTSF	9	Unmodified	_YVSRTLTSF_					0	0	0			REV__ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant	REV__ANK2|p.H3647Ifs*128|1|0.14|ENSG00000145362|chr4:113365089-113365089|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	536.8602294921875	2	537.284931	1072.55531	0.30367	0.00016316	0.68049	0.00036562	0.98415	0.00052877	537.2855669507221	53.464	0.64835	53.52	53.247	53.895	0.056255					32	24	2	0	0	0	0.22061	1	12708	12708		18.146	0	1	457560	+		60660	13103	34870	34871	73895	73895					0.021934390976412033
YVSSETKEPN	10	Unmodified	_YVSSETKEPN_					0	0	0			REV__ENSG00000204740|ENST00000454679|MALRD1	REV__ENSG00000204740|ENST00000454679|MALRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.2730712890625	2	577.272218	1152.52988	0.41384	0.0002389	0.42092	0.00024299	0.83476	0.00048188	577.2726504720731	21.674	1.1959	21.573	21.275	22.471	-0.10034					128	43	5	0	0	0	0.39745	1	3061	3061		3.9444	0	1	3139800	+		60661	18962	34871	34872	73896	73896					-0.04028080215425689
YVSSETKEPN	10	Unmodified	_YVSSETKEPN_					0	0	0			REV__ENSG00000204740|ENST00000454679|MALRD1	REV__ENSG00000204740|ENST00000454679|MALRD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.2728881835938	2	577.272218	1152.52988	0.33282	0.00019213	0.55814	0.0003222	0.89096	0.00051433	577.2726910034628	24.326	0.84613	24.253	24.055	24.901	-0.072559					80	28	4	0	0	0	0.39745	1	3812	3812		3.9444	0	1	1016700	+		60662	18962	34871	34872	73897	73897					-0.04028080215425689
YVSSLVNS	8	Unmodified	_YVSSLVNS_					0	0	0			REV__ENSG00000177508|ENST00000329734|IRX3	REV__ENSG00000177508|ENST00000329734|IRX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	434.78009033203125	2	434.724175	867.433798	-0.21436	-9.3187E-05	1.967	0.00085512	1.7527	0.00076193	434.7258318628681	29.217	0.38149	29.23	29.009	29.39	0.013474					18	13	2	0	0	0	0.34319	1	5205	5205		2.5775	0	1	76402	+		60663	17995	34872	34873	73898	73898					-0.005221832648544478
YVSSQAIFLF	10	Unmodified	_YVSSQAIFLF_					0	0	0		ENST00000309971.8_1_9:131267149-131271258:+|nuORF	ENST00000309971.8_1_9:131267149-131271258:+|nuORF	ENST00000309971.8_1_9:131267149-131271258:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	587.81103515625	2	587.810782	1173.60701	0.42147	0.00024774	-1.5773	-0.00092716	-1.1559	-0.00067942	587.8102177188211	71.637	0.70091	71.637	71.431	72.132	0					63	24	4	0	0	0	0.11081	2	18222	18222;18273		45.7	14.431	1	1036300			60664	9309	34873	34874	73899;73900	73899					0.027151827915531612
YVSSQAIFLF	10	Unmodified	_YVSSQAIFLF_					0	0	0		ENST00000309971.8_1_9:131267149-131271258:+|nuORF	ENST00000309971.8_1_9:131267149-131271258:+|nuORF	ENST00000309971.8_1_9:131267149-131271258:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.810791015625	2	587.810782	1173.60701	0.32842	0.00019305	-1.146	-0.00067362	-0.81756	-0.00048057	587.8103717570793	71.572	1.0489	71.628	71.175	72.224	0.056572					85	37	3	0	0	0	0.11081	1	18188	18188		45.7	3.86	1	1524900			60665	9309	34873	34874	73901	73901					0.027151827915531612
YVSSQAIFLF	10	Unmodified	_YVSSQAIFLF_					0	0	0		ENST00000309971.8_1_9:131267149-131271258:+|nuORF	ENST00000309971.8_1_9:131267149-131271258:+|nuORF	ENST00000309971.8_1_9:131267149-131271258:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.8104858398438	2	587.810782	1173.60701	0.45628	0.00026821	-1.3033	-0.00076612	-0.84707	-0.00049792	587.810263535388	71.701	1.0705	71.674	71.185	72.256	-0.027275					92	38	4	0	0	0	0.11081	3	18222	18222;18271;18321		45.7	14.431	1	2041200			60666	9309	34873	34874	73902;73903;73904	73902					0.027151827915531612
YVSTSYDTF	9	Unmodified	_YVSTSYDTF_					0	0	0		nc|ENSG00000105429|Q7Z7M0-2|MEGF8;ENSG00000105429|ENST00000251268|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	542.2594604492188	2	541.73748	1081.46041	0.55811	0.00030235	0.96185	0.00052107	1.52	0.00082342	541.7378586452353	56.869	0.7086	56.948	56.603	57.311	0.078674					61	26	4	0	0	0	0.23783	1	13601	13601		18.135	1.1927	1	637680			60667	1979	34874	34875	73905	73905					-0.07706539164200876
YVSYFYHD	8	Unmodified	_YVSYFYHD_					0	0	0		nc|ENSG00000110077|Q9H2W1|MS4A6A;ENSG00000110077|ENST00000528851|MS4A6A;nc|ENSG00000110077|Q9H2W1-5|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.3040161132812	2	547.234907	1092.45526	0.32848	0.00017976	0.087165	4.77E-05	0.41565	0.00022746	547.2349479207523	29.653	0.41623	29.666	29.329	29.745	0.013474					17	13	2	0	0	0	0.34319	1	5254	5254		5.7604	0	1	74841			60668	12646	34875	34876	73906	73906					-0.0872679823614817
YVSYFYHD	8	Unmodified	_YVSYFYHD_					0	0	0		nc|ENSG00000110077|Q9H2W1|MS4A6A;ENSG00000110077|ENST00000528851|MS4A6A;nc|ENSG00000110077|Q9H2W1-5|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	nc|ENSG00000110077|Q9H2W1|MS4A6A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	547.234907	1092.45526	0.60105	0.00032892	-1.2876	-0.00070462	-0.68655	-0.00037571	547.2340905394856	29.681	0.16944	29.681	29.605	29.774	0	0.0075848	-0.0011206	NaN	5.7604	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50386			60669	12646	34875	34876							-0.0872679823614817
YVSYRRNAF	9	Unmodified	_YVSYRRNAF_					0	0	0		nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	nc|ENSG00000108018|Q8WY21-4|SORCS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.7474975585938	2	588.301447	1174.58834	0.50604	0.0002977	-1.8196	-0.0010705	-1.3136	-0.00077279	588.2999725745277	44.508	0.48914	44.576	44.378	44.867	0.068569					23	17	2	0	0	0	0.25526	1	9857	9857		7.9102	0	1	177990			60670	2159	34876	34877	73907	73907					0.008030659403630125
YVTEEFNF	8	Unmodified	_YVTEEFNF_					0	0	0			REV__ENST00000495985.5_1_5:60199536-60214382:-|nuORF	REV__ENST00000495985.5_1_5:60199536-60214382:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7359008789062	2	524.73474	1047.45493	0.56708	0.00029757	0.57927	0.00030396	1.1464	0.00060153	524.7348953561356	40.211	0.50178	40.211	40.024	40.526	0					28	17	2	0	0	0	0.32435	1	8554	8554		23.148	6.2061	1	412670	+		60671	13554	34877	34878	73908	73908					-0.06690217955997468
YVTGGALWAV	10	Unmodified	_YVTGGALWAV_					0	0	0			REV__nc|ENSG00000162729|Q969P0-2|IGSF8	REV__nc|ENSG00000162729|Q969P0-2|IGSF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	518.3173217773438	2	518.776742	1035.53893	0.15974	8.2868E-05	0.64167	0.00033288	0.80141	0.00041575	518.7769568645518	76.635	0.82832	76.688	76.32	77.148	0.053413					58	29	3	0	0	0	0.27042	1	19720	19720		28.487	11.545	1	194980	+		60672	17004	34878	34879	73909	73909					0.022583579315551106
YVTGGALWAV	10	Unmodified	_YVTGGALWAV_					0	0	0			REV__nc|ENSG00000162729|Q969P0-2|IGSF8	REV__nc|ENSG00000162729|Q969P0-2|IGSF8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	518.3173828125	2	518.776742	1035.53893	0.47662	0.00024726	0.32159	0.00016684	0.79822	0.0004141	518.7767796853242	76.636	0.70036	76.605	76.29	76.991	-0.031487					52	25	3	0	0	0	0.27042	1	19701	19701		28.487	28.487	1	232890	+		60673	17004	34878	34879	73910	73910					0.022583579315551106
YVTGLLKLF	9	Unmodified	_YVTGLLKLF_					0	0	0			REV__ENST00000233055.8_1_2:224742209-224742272:-|nuORF	REV__ENST00000233055.8_1_2:224742209-224742272:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	527.30224609375	2	527.320786	1052.62702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.914	1	91.914	91.414	92.414	0								0	0	0	0.23091	1	24425	24425		12.532	1.4171	1		+		60674	19468	34879	34880	73911	73911					0.10280978522177975
YVTGLLKLF	9	Unmodified	_YVTGLLKLF_					0	0	0			REV__ENST00000233055.8_1_2:224742209-224742272:-|nuORF	REV__ENST00000233055.8_1_2:224742209-224742272:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	527.30224609375	2	527.320786	1052.62702	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.958	1	91.959	91.459	92.459	0.00046539								0	0	0	0.23091	1	24432	24432		12.532	3.1841	1		+		60675	19468	34879	34880	73912	73912					0.10280978522177975
YVTGNKLRQ	9	Unmodified	_YVTGNKLRQ_					0	0	0		nc|ENSG00000127870|Q9Y252-2|RNF6;ENSG00000127870|ENST00000381588|RNF6	nc|ENSG00000127870|Q9Y252-2|RNF6	nc|ENSG00000127870|Q9Y252-2|RNF6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	539.8057250976562	2	539.803823	1077.59309	0.62645	0.00033816	2.0491	0.0011061	2.6755	0.0014443	539.8050262431904	71.179	0.8497	71.154	70.69	71.54	-0.024864					60	30	3	0	0	0	0.16283	1	18136	18136		29.082	0	1	1047000			60676	3338	34880	34881	73913	73913					0.057399500831252226
YVTGSVFITV	10	Unmodified	_YVTGSVFITV_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	543.7774047851562	2	543.297507	1084.58046	0.41875	0.00022751	-0.6134	-0.00033326	-0.19465	-0.00010575	543.797063320323	53.726	0.18313	53.783	53.611	53.794	0.056255					9	6	2	0	0	0	0.30958	1	12674	12674		19.257	0	1	162590	+		60677	13717	34881	34882	73914	73914					0.04155493900225338
YVTGTIGEEQ	10	Unmodified	_YVTGTIGEEQ_					0	0	0		ENST00000446622.5_1_2:216199652-216212358:+|nuORF	ENST00000446622.5_1_2:216199652-216212358:+|nuORF	ENST00000446622.5_1_2:216199652-216212358:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	549.28515625	2	548.761486	1095.50842	0.60369	0.00033128	-1.3738	-0.0007539	-0.77014	-0.00042262	548.7605960483204	44.538	0.88976	44.538	44.206	45.095	0					61	32	4	0	0	0	0.26638	1	10013	10013		30.637	12.502	1	1565200			60678	10598	34882	34883	73915	73915					-0.035514652441406724
YVTGTIGEEQ	10	Unmodified	_YVTGTIGEEQ_					0	0	0		ENST00000446622.5_1_2:216199652-216212358:+|nuORF	ENST00000446622.5_1_2:216199652-216212358:+|nuORF	ENST00000446622.5_1_2:216199652-216212358:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	548.761486	1095.50842	0.61306	0.00033642	-1.4594	-0.00080087	-0.84636	-0.00046445	548.7605859453043	44.218	0.93179	44.287	43.99	44.922	0.068573	-0.073723	-9.2693E-05	NaN	30.637	59	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1429900			60679	10598	34882	34883							-0.035514652441406724
YVTIFLCTY	9	Unmodified	_YVTIFLCTY_					0	0	0		nc|ENSG00000160271|Q12967-2|RALGDS;nc|ENSG00000160271|Q12967-3|RALGDS;nc|ENSG00000160271|Q12967-4|RALGDS;nc|ENSG00000160271|Q12967-6|RALGDS;nc|ENSG00000160271|Q12967-5|RALGDS;ENSG00000160271|ENST00000372050|RALGDS	nc|ENSG00000160271|Q12967-2|RALGDS	nc|ENSG00000160271|Q12967-2|RALGDS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	561.79541015625	2	561.780636	1121.54672	0.26344	0.00014799	1.3508	0.00075883	1.6142	0.00090683	561.7812567271554	80.353	0.83379	80.326	80.034	80.868	-0.026825					77	29	4	0	0	0	0.31038	1	20922	20922		7.2892	0	1	1128700			60680	12790	34883	34884	73916	73916					-0.009192508631485907
YVTLLNCHI	9	Unmodified	_YVTLLNCHI_					0	0	0		ENST00000359774.8_1_2:160139429-160139555:-|nuORF	ENST00000359774.8_1_2:160139429-160139555:-|nuORF	ENST00000359774.8_1_2:160139429-160139555:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.760498046875	2	538.283877	1074.5532	0.72862	0.00039221	1.9554	0.0010526	2.6841	0.0014448	538.2854098042841	84.299	0.21935	84.299	84.186	84.405	0					10	8	2	0	0	0	0.24913	1	22092	22092		12.532	0	1	113140			60681	9668	34884	34885	73917	73917					0.018906870881892246
YVTLLSIIF	9	Unmodified	_YVTLLSIIF_					0	0	0		ENST00000491182.1_1_3:149042665-149051366:-|nuORF;ENSG00000163762|ENST00000296059|TM4SF18	ENST00000491182.1_1_3:149042665-149051366:-|nuORF	ENST00000491182.1_1_3:149042665-149051366:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.9328002929688	2	534.820618	1067.62668	-1.3804	-0.00073826	0.87183	0.00046627	-0.50857	-0.00027199	534.8212153443687	34.823	0.25347	34.898	34.763	35.017	0.075306					10	8	2	0	0	0	0.25879	1	6901	6901		4.756	0	1	62683			60682	5728	34885	34886	73918	73918					0.09557558802316635
YVTPNFNKL	9	Unmodified	_YVTPNFNKL_					0	0	0			REV__ENST00000467733.1_1_3:156262080-156272878:-|nuORF	REV__ENST00000467733.1_1_3:156262080-156272878:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	547.7633056640625	2	548.295299	1094.57605	0.58631	0.00032147	-2.5483	-0.0013972	-1.962	-0.0010757	548.2937691148808	42.219	0.40431	42.31	42.095	42.499	0.091362					21	13	2	0	0	0	0.24688	1	9147	9147		14.838	0	1	303260	+		60683	21306	34886	34887	73919	73919					0.03254029477329823
YVTSKPSIT	9	Unmodified	_YVTSKPSIT_					0	0	0			REV__ENSG00000171320|ENST00000305188|ESCO2	REV__ENSG00000171320|ENST00000305188|ESCO2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	497.7961730957031	2	498.274032	994.533512	0.46077	0.00022959	-0.15741	-7.8433E-05	0.30336	0.00015115	498.27396707388976	43.566	0.4923	43.643	43.373	43.865	0.077518					36	17	3	0	0	0	0.23784	1	9497	9497		13.906	0	1	607730	+		60684	17632	34887	34888	73920	73920					0.036026343490902946
YVTSTYQSL	9	Unmodified	_YVTSTYQSL_					0	0	0		nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	nc|ENSG00000157077|O95405-2|ZFYVE9	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	531.2612915039062	2	531.261122	1060.50769	0.15044	7.9925E-05	0.93813	0.00049839	1.0886	0.00057832	531.2616679797738	59.548	0.4956	59.643	59.412	59.907	0.095089					29	17	3	0	0	0	0.16283	1	14518	14518		29.082	0.59474	1	229820			60685	5277	34888	34889	73921	73921					-0.020142598931897737
YVTVELIGL	9	Unmodified	_YVTVELIGL_					0	0	0			REV__ENST00000528557.5_1_1:26759436-26769365:+|nuORF	REV__ENST00000528557.5_1_1:26759436-26769365:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	503.7945556640625	2	503.794601	1005.57465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.412	1	85.493	84.993	85.993	0.080887								0	0	0	0.14428	1	22427	22427		36.044	0	1		+		60686	14986	34889	34890	73922	73922					0.0720839538855671
YVTYHDLH	8	Unmodified	_YVTYHDLH_					0	0	0			REV__nc|ENSG00000116675|O75061-4|DNAJC6	REV__nc|ENSG00000116675|O75061-4|DNAJC6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	524.7359008789062	2	524.248349	1046.48214	0.38952	0.00020421	0.098635	5.1709E-05	0.48816	0.00025592	524.2482274760823	40.045	0.42345	40.045	39.803	40.226	0					26	14	2	0	0	0	0.43727	1	8554	8554		10.183	10.183	1	195490	+		60687	14930	34890	34891	73923	73923					-0.0392368962495766
YVVFFFMT	8	Unmodified	_YVVFFFMT_					0	0	0			REV__ENST00000428210.5_1_2:61705957-61719950:-|nuORF	REV__ENST00000428210.5_1_2:61705957-61719950:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	526.8013916015625	2	527.259339	1052.50413	0.16574	8.7389E-05	-1.4733	-0.00077682	-1.3076	-0.00068943	527.2578735005465	13.059	0.3269	13.059	12.847	13.174	0					24	11	3	0	0	0	0.34434	1	313	313		0.79363	0	1	38038	+		60688	20917	34891	34892	73924	73924					-0.020026012007519967
YVVFFFMT	8	Unmodified	_YVVFFFMT_					0	0	0			REV__ENST00000428210.5_1_2:61705957-61719950:-|nuORF	REV__ENST00000428210.5_1_2:61705957-61719950:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	527.259339	1052.50413	0.11068	5.8358E-05	-2.2833	-0.0012039	-2.1727	-0.0011456	527.2580072567021	13.115	0.31985	13.016	12.841	13.16	-0.099291	-0.01339	-0.00024347	NaN	0.79363	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32455	+		60689	20917	34891	34892							-0.020026012007519967
YVVFGEIPS	9	Unmodified	_YVVFGEIPS_					0	0	0		ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	ENSG00000206530|ENST00000393845|CFAP44	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	505.7653503417969	2	505.7633	1009.51205	0.27317	0.00013816	0.55635	0.00028138	0.82951	0.00041954	505.76475492186756	68.252	1.1814	68.324	67.891	69.072	0.071938					112	43	4	0	0	0	0.25314	1	17159	17159		15.847	2.3393	1	720270			60690	8322	34892	34893	73925	73925					0.0076724932038132465
YVVHLAPAS	9	Unmodified	_YVVHLAPAS_					0	0	0		ENSG00000133328|ENST00000255695|PLAAT2	ENSG00000133328|ENST00000255695|PLAAT2	ENSG00000133328|ENST00000255695|PLAAT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.308349609375	2	478.763635	955.512717	0.24427	0.00011695	-0.19021	-9.1065E-05	0.05406	2.5882E-05	478.7633869553636	20.535	0.59711	20.535	20.285	20.883	0					42	20	3	0	0	0	0.25938	1	2648	2648		4.3292	0.73274	1	114680			60691	3707	34893	34894	73926	73926					0.03318088760090632
YVVHLAPAS	9	Unmodified	_YVVHLAPAS_					0	0	0		ENSG00000133328|ENST00000255695|PLAAT2	ENSG00000133328|ENST00000255695|PLAAT2	ENSG00000133328|ENST00000255695|PLAAT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	479.3081970214844	2	478.763635	955.512717	0.51557	0.00024684	-0.67283	-0.00032213	-0.15726	-7.5289E-05	478.7634308262055	20.678	0.62217	20.625	20.355	20.977	-0.05291					34	21	2	0	0	0	0.25526	1	2675	2675		7.9102	1.187	1	136760			60692	3707	34893	34894	73927	73927					0.03318088760090632
YVVIGLQGF	9	Unmodified	_YVVIGLQGF_					0	0	0		ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	ENSG00000162817|ENST00000294889|C1orf115	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	498.8263244628906	2	498.28166	994.548768	0.26958	0.00013433	-0.096177	-4.7923E-05	0.1734	8.6402E-05	498.2816259963807	61.827	0.60477	61.827	61.51	62.115	0					42	21	3	0	0	0	0.18943	1	15136	15136		30.225	22.936	1	449260			60693	5622	34894	34895	73928	73928					0.051275459369549026
YVVIIDGKF	9	Unmodified	_YVVIIDGKF_					0	0	0			REV__nc|ENSG00000141655|Q9Y6Q6-2|TNFRSF11A	REV__nc|ENSG00000141655|Q9Y6Q6-2|TNFRSF11A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	526.8453979492188	2	527.302593	1052.59063	0.47184	0.0002488	0.15603	8.2277E-05	0.62788	0.00033108	527.3026075364268	58.935	0.64254	59.026	58.708	59.351	0.091301					43	22	3	0	0	0	0.24542	1	14221	14221		14.582	3.7578	1	344890	+		60694	16090	34895	34896	73929	73929					0.06644101625465737
YVVIIDGKF	9	Unmodified	_YVVIIDGKF_					0	0	0			REV__nc|ENSG00000141655|Q9Y6Q6-2|TNFRSF11A	REV__nc|ENSG00000141655|Q9Y6Q6-2|TNFRSF11A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	527.302593	1052.59063	0.46928	0.00024746	0.30512	0.00016089	0.7744	0.00040835	527.3026784480144	59.125	0.73293	59.125	58.712	59.445	0	0.049288	0.00014014	NaN	14.582	42	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348470	+		60695	16090	34895	34896							0.06644101625465737
YVVIIDGKF	9	Unmodified	_YVVIIDGKF_					0	0	0			REV__nc|ENSG00000141655|Q9Y6Q6-2|TNFRSF11A	REV__nc|ENSG00000141655|Q9Y6Q6-2|TNFRSF11A	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	527.302593	1052.59063	0.59593	0.00031424	-0.039691	-2.0929E-05	0.55624	0.00029331	527.3024471598576	59.091	0.58974	59.077	58.806	59.396	-0.014267	0.0006045	-0.0002235	NaN	14.582	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424020	+		60696	16090	34895	34896							0.06644101625465737
YVVQGIYGY	9	Unmodified	_YVVQGIYGY_					0	0	0		ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	530.7437133789062	2	531.26875	1060.52295	0.061087	3.2454E-05	0.84578	0.00044933	0.90686	0.00048179	531.2690360587471	28.063	0.80555	28.059	27.632	28.438	-0.0042572					43	28	2	0	0	0	0.25417	1	4737	4737		8.5933	0	1	199150			60697	2271	34896	34897	73930	73930					-0.004893483053365344
YVVRTFTL	8	Unmodified	_YVVRTFTL_					0	0	0		nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.8034362792969	2	499.78711	997.559667	0.3358	0.00016783	-0.87568	-0.00043765	-0.53988	-0.00026982	499.78665151924525	49.188	0.63401	49.233	48.906	49.54	0.044891					40	22	2	0	0	0	0.42758	1	11237	11237		13.508	0	1	729300			60698	5045	34897	34898	73931	73931					0.06078948311244403
YVVWYVMNF	9	Unmodified	_YVVWYVMNF_					0	0	0			REV__ENSG00000109158|ENST00000264318|GABRA4	REV__ENSG00000109158|ENST00000264318|GABRA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	407.8797912597656	3	407.531811	1219.5736	-0.26572	-0.00010829	-0.46758	-0.00019055	-0.7333	-0.00029884	407.53165536440446	25.812	0.62691	25.774	25.5	26.126	-0.038671					31	21	2	0	0	0	0.32371	1	4257	4257		5.2969	2.2246	1	189700	+		60699	14631	34898	34899	73932	73932					-0.027401422519915286
YVWEFDERS	9	Unmodified	_YVWEFDERS_					0	0	0			REV__ENSG00000143753|ENST00000323699|DEGS1	REV__ENSG00000143753|ENST00000323699|DEGS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	410.8522644042969	3	410.852377	1229.5353	-0.38653	-0.00015881	0.33623	0.00013814	-0.050302	-2.0667E-05	410.8524175046969	13.291	0.39417	13.291	13.09	13.484	0					31	13	3	0	0	0	0.26228	1	396	396		1.1933	0	1	112550	+		60700	16197	34899	34900	73933	73933					-0.0702835663296355
YVWGQYDLL	9	Unmodified	_YVWGQYDLL_					0	0	0		nc|ENSG00000111144|P09960-3|LTA4H;ENST00000548852.5_1_12:96397735-96429337:-|nuORF;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	nc|ENSG00000111144|P09960-3|LTA4H	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	578.7975463867188	2	578.787307	1155.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.073	1	52.073	51.573	52.573	0								0	0	0	0.20238	1	12199	12199		21.747	5.8995	1				60701	2349	34900	34901	73934	73934					-0.01149676759587237
YVWLWVWVG	9	Unmodified	_YVWLWVWVG_					0	0	0		ENST00000370355.2_1_10:102123393-102123534:+|nuORF	ENST00000370355.2_1_10:102123393-102123534:+|nuORF	ENST00000370355.2_1_10:102123393-102123534:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.6807250976562	2	604.318577	1206.6226	0.02261	1.3663E-05	0.37582	0.00022712	0.39843	0.00024078	604.8207660148688	14.616	0.24416	14.55	14.4	14.644	-0.066068					10	8	2	0	0	0	0.26251	1	744	744		0.6015	0	1	19548			60702	9800	34901	34902	73935	73935					0.02755514099226275
YVWLWVWVG	9	Unmodified	_YVWLWVWVG_					0	0	0		ENST00000370355.2_1_10:102123393-102123534:+|nuORF	ENST00000370355.2_1_10:102123393-102123534:+|nuORF	ENST00000370355.2_1_10:102123393-102123534:+|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	604.318577	1206.6226	0.17745	0.00010723	-1.1681	-0.0007059	-0.99065	-0.00059867	604.3175403163223	14.452	0.16627	14.452	14.365	14.531	0	-0.049003	-0.00073462	NaN	0.6015	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15476			60703	9800	34901	34902							0.02755514099226275
YVWPYTYTL	9	Unmodified	_YVWPYTYTL_					0	0	0			REV__DNASE2|p.N183D|1|0.09|ENSG00000105612|chr19:12878544-12878544|T/C|missense_variant	REV__DNASE2|p.N183D|1|0.09|ENSG00000105612|chr19:12878544-12878544|T/C|missense_variant	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.3009643554688	2	603.297507	1204.58046	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.711	1	83.788	83.288	84.288	0.077095								0	0	0	0.24522	1	21904	21904		7.9102	1.187	1		+		60704	13302	34902	34903	73936	73936					-0.013645060997760083
YVWQGPTSAPI	11	Unmodified	_YVWQGPTSAPI_					0	0	0		ENSG00000108510|ENST00000397786|MED13;MED13|p.N1136Tfs*11|1|0.24|ENSG00000108510|chr17:61982596-61982596|T/-|frameshift_variant	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.3377685546875	2	609.811313	1217.60807	0.3964	0.00024173	-0.70542	-0.00043017	-0.30902	-0.00018844	609.810672508742	66.524	0.85364	66.607	66.274	67.128	0.083832					70	30	3	0	0	0	0.31295	1	16790	16790		22.658	4.5117	1	265490			60705	2190	34903	34904	73937	73937					0.007973971604769758
YVWQGPTSAPI	11	Unmodified	_YVWQGPTSAPI_					0	0	0		ENSG00000108510|ENST00000397786|MED13;MED13|p.N1136Tfs*11|1|0.24|ENSG00000108510|chr17:61982596-61982596|T/-|frameshift_variant	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.3377075195312	2	609.811313	1217.60807	0.16728	0.00010201	-0.15652	-9.5446E-05	0.010763	6.5631E-06	609.8108331987343	66.691	0.96733	66.677	66.327	67.294	-0.013588					66	34	3	0	0	0	0.32231	1	16830	16830		19.362	1.2156	1	290860			60706	2190	34903	34904	73938	73938					0.007973971604769758
YVYFTNELK	9	Unmodified	_YVYFTNELK_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.80126953125	2	588.800414	1175.58628	0.67928	0.00039996	0.47355	0.00027883	1.1528	0.00067879	588.8006060526116	50.772	0.56565	50.818	50.604	51.169	0.046574					47	20	3	0	0	0	0.03069	1	11841	11841		60.074	39.493	1	1223400			60707	3012	34904	34905	73939	73939					0.005505924119006522
YVYFTNELK	9	Unmodified	_YVYFTNELK_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	588.800414	1175.58628	0.79802	0.00046988	0.28612	0.00016847	1.0841	0.00063834	588.8005365156616	50.808	0.48577	50.808	50.569	51.055	0	-0.040629	-0.00018245	NaN	60.074	56	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1358000			60708	3012	34904	34905							0.005505924119006522
YVYFTNELK	9	Unmodified	_YVYFTNELK_					0	0	0		ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF	ENSG00000121858|ENST00000241261|TNFSF10	ENSG00000121858|ENST00000241261|TNFSF10	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	588.800414	1175.58628	0.74046	0.00043598	0.5127	0.00030188	1.2532	0.00073786	588.8007115538919	50.91	0.52226	50.92	50.647	51.169	0.0095673	0.071045	8.4372E-05	NaN	60.074	57	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	951860			60709	3012	34904	34905							0.005505924119006522
YVYHQSPVF	9	Unmodified	_YVYHQSPVF_					0	0	0			REV__nc|ENSG00000158517|P14598-2|NCF1	REV__nc|ENSG00000158517|P14598-2|NCF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.2925415039062	2	570.279649	1138.54475	0.59177	0.00033748	-1.4674	-0.00083681	-0.87561	-0.00049934	570.2789639267396	84.365	0.39841	84.442	84.247	84.645	0.077095					23	15	3	0	0	0	0.28674	1	22115	22115		10.824	1.4408	1	122190	+		60710	21103	34905	34906	73940	73940					-0.018985435567628883
YVYHQSPVF	9	Unmodified	_YVYHQSPVF_					0	0	0			REV__nc|ENSG00000158517|P14598-2|NCF1	REV__nc|ENSG00000158517|P14598-2|NCF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	570.279649	1138.54475	0.48349	0.00027573	-0.36649	-0.000209	0.117	6.6725E-05	570.2792437540488	84.54	0.28823	84.54	84.324	84.612	0	0.052018	0.0006692	NaN	10.824	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161750	+		60711	21103	34905	34906							-0.018985435567628883
YVYHQSPVF	9	Unmodified	_YVYHQSPVF_					0	0	0			REV__nc|ENSG00000158517|P14598-2|NCF1	REV__nc|ENSG00000158517|P14598-2|NCF1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	570.279649	1138.54475	0.59177	0.00033748	-1.4674	-0.00083681	-0.87561	-0.00049934	570.2789639267396	84.365	0.39841	84.442	84.247	84.645	0.077095	-0.046128	-0.00058643	NaN	10.824	23	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122190	+		60712	21103	34905	34906							-0.018985435567628883
YVYHQSPVF	9	Unmodified	_YVYHQSPVF_					0	0	0			REV__nc|ENSG00000158517|P14598-2|NCF1	REV__nc|ENSG00000158517|P14598-2|NCF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	570.279649	1138.54475	0.46229	0.00026363	0.16395	9.3497E-05	0.62624	0.00035713	570.2799379837488	84.495	0.3544	84.482	84.302	84.656	-0.01284	-0.0058903	0.0012742	NaN	10.824	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88776	+		60713	21103	34905	34906							-0.018985435567628883
YVYIHIFD	8	Unmodified	_YVYIHIFD_					0	0	0			REV__ENST00000508446.1_1_8:15531285-15601080:+|nuORF	REV__ENST00000508446.1_1_8:15531285-15601080:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	535.2933349609375	2	535.271293	1068.52803	0.79101	0.0004234	0.37473	0.00020058	1.1657	0.00062399	535.7733079426066	33.945	0.80233	34.012	33.432	34.235	0.06636					49	28	3	0	0	0	0.33618	1	6706	6706		17.087	9.1764	1	199260	+		60714	21773	34906	34907	73941	73941					-0.003490444427143302
YVYIHIFD	8	Unmodified	_YVYIHIFD_					0	0	0			REV__ENST00000508446.1_1_8:15531285-15601080:+|nuORF	REV__ENST00000508446.1_1_8:15531285-15601080:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	535.2933959960938	2	535.271293	1068.52803	0.33969	0.00018183	0.73185	0.00039174	1.0715	0.00057356	535.7735258103985	33.936	0.43943	34.003	33.77	34.209	0.066704					35	15	3	0	0	0	0.33618	1	6683	6683		17.087	5.4463	1	222810	+		60715	21773	34906	34907	73942	73942					-0.003490444427143302
YVYISAHPSLF	11	Unmodified	_YVYISAHPSLF_					0	0	0		ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	ENST00000407010.6_2_7:16128723-16129239:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	432.88525390625	3	432.892284	1295.65502	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.454	1	30.481	29.981	30.981	0.027157								0	0	0	0.37109	1	5570	5570		1.4551	0	1				60716	10228	34907	34908	73943	73943					0.019022567116053324
YVYIVLDPF	9	Unmodified	_YVYIVLDPF_					0	0	0			REV__ENSG00000135828|ENST00000367559|RNASEL	REV__ENSG00000135828|ENST00000367559|RNASEL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.3003540039062	2	564.802426	1127.5903	0.55038	0.00031085	-0.95498	-0.00053937	-0.4046	-0.00022852	565.3036348790109	53.222	0.49173	53.278	53.043	53.535	0.056255					44	17	4	0	0	0	0.19839	1	12599	12599		28.487	10.352	1	1041700	+		60717	15765	34908	34909	73944	73944					0.03160681905592355
YVYIVLDPF	9	Unmodified	_YVYIVLDPF_					0	0	0			REV__ENSG00000135828|ENST00000367559|RNASEL	REV__ENSG00000135828|ENST00000367559|RNASEL	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	564.802426	1127.5903	0.3437	0.00019412	-0.56646	-0.00031994	-0.22276	-0.00012581	565.3036763253683	53.312	0.4511	53.302	53.056	53.507	-0.0096054	0.012084	0.00021711	NaN	28.487	50	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1011300	+		60718	15765	34908	34909							0.03160681905592355
YVYLEHID	8	Unmodified	_YVYLEHID_					0	0	0			REV__DOCK3|p.N1302Rfs*23|1|0.22|ENSG00000088538|chr3:51341374-51341378|AACAA/-|frameshift_variant	REV__DOCK3|p.N1302Rfs*23|1|0.22|ENSG00000088538|chr3:51341374-51341378|AACAA/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	525.783935546875	2	526.258382	1050.50221	0.13462	7.0844E-05	1.7125	0.00090122	1.8471	0.00097207	526.2595395419999	61.968	0.085098	62.065	62.004	62.089	0.096985					4	2	2	0	0	0	0.34185	1	15254	15254		10.183	0.83596	1	64734	+		60719	13303	34909	34910	73945	73945					-0.021019386850184674
YVYNSFERS	9	Unmodified	_YVYNSFERS_					0	0	0			REV__ENST00000322396.6_1_4:148605146-148605293:-|nuORF	REV__ENST00000322396.6_1_4:148605146-148605293:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	582.3505249023438	2	582.769645	1163.52474	0.76291	0.0004446	-1.3365	-0.00077884	-0.57354	-0.00033424	582.7688321231399	50.726	0.32763	50.726	50.544	50.872	0					16	11	2	0	0	0	0.25202	1	11807	11807		10.824	1.4765	1	131450	+		60720	19977	34910	34911	73946	73946					-0.05048339287372983
YVYRTSYY	8	Unmodified	_YVYRTSYY_					0	0	0			REV__RNF139|p.L406Pfs*11|1|0.25|ENSG00000170881|chr8:124486866-124486866|T/-|frameshift_variant	REV__RNF139|p.L406Pfs*11|1|0.25|ENSG00000170881|chr8:124486866-124486866|T/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.7457885742188	2	557.763832	1113.51311	0.44941	0.00025067	0.074806	4.1724E-05	0.52422	0.00029239	557.763769673898	54.353	0.67606	54.337	54.057	54.734	-0.015923					78	23	4	0	0	0	0.35375	1	13003	13003		24.674	1.5255	1	5146200	+		60721	17602	34911	34912	73947	73947					-0.03910536310718271
YWALGFQL	8	Unmodified	_YWALGFQL_					0	0	0		ENSG00000090402|ENST00000264382|SI	ENSG00000090402|ENST00000264382|SI	ENSG00000090402|ENST00000264382|SI	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	499.7928771972656	2	499.260728	996.506903	0.42496	0.00021217	-2.5715	-0.0012839	-2.1466	-0.0010717	499.259371308016	58.649	0.59937	58.741	58.502	59.101	0.091301					30	20	2	0	0	0	0.32778	1	14333	14333		20.871	0	1	174790			60722	1376	34912	34913	73948	73948					0.008509902484433951
YWAYGRHA	8	Unmodified	_YWAYGRHA_					0	0	0		ENST00000564806.1_1_16:30036506-30036905:-|nuORF;nc|ENSG00000149926|Q71RH2-2|TLCD3B;ENSG00000149926|ENST00000380495|TLCD3B	ENST00000564806.1_1_16:30036506-30036905:-|nuORF	ENST00000564806.1_1_16:30036506-30036905:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	512.2605590820312	2	512.243401	1022.47225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.055	1	26.017	25.517	26.517	-0.038671								0	0	0	0.37078	1	4241	4241		5.2307	0	1				60723	4897	34913	34914	73949	73949					-0.038088328396725046
YWDFEFPRPYL	11	Unmodified	_YWDFEFPRPYL_					0	0	0		nc|ENSG00000173610|P0DTE4-1|UGT2A1;ENSG00000173610|ENST00000286604|UGT2A1;nc|ENSG00000173610|P0DTE4-4|UGT2A1;nc|ENSG00000271271|P0DTE5-2|UGT2A2;ENSG00000271271|ENST00000604629|UGT2A2	nc|ENSG00000173610|P0DTE4-1|UGT2A1	nc|ENSG00000173610|P0DTE4-1|UGT2A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	511.3001403808594	3	511.578477	1531.7136	0.30953	0.00015835	0.097273	4.9763E-05	0.4068	0.00020811	511.5786514340111	59.016	0.44481	59.001	58.777	59.222	-0.014267					31	15	3	0	0	0	0.33326	1	14389	14389		1.4551	0	1	257870			60724	12841	34914	34915	73950	73950					-0.03098686713906318
YWDVGNLV	8	Unmodified	_YWDVGNLV_					0	0	0		nc|ENSG00000148053|Q16620-7|NTRK2;nc|ENSG00000148053|Q16620-2|NTRK2;nc|ENSG00000148053|Q16620-3|NTRK2;nc|ENSG00000148053|Q16620-5|NTRK2;nc|ENSG00000148053|Q16620-6|NTRK2;nc|ENSG00000148053|Q16620|NTRK2;ENSG00000148053|ENST00000277120|NTRK2	nc|ENSG00000148053|Q16620-7|NTRK2	nc|ENSG00000148053|Q16620-7|NTRK2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	483.2763366699219	2	483.239993	964.465432	0.20407	9.8613E-05	0.38833	0.00018766	0.59239	0.00028627	483.240048243758	59.295	0.27654	59.387	59.211	59.488	0.091301					10	9	2	0	0	0	0.34167	1	14380	14380		11.64	3.7301	1	74971			60725	4790	34915	34916	73951	73951					-0.018221905108930514
YWHGCDFF	8	Unmodified	_YWHGCDFF_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.710693359375	2	537.710545	1073.40654	0.52266	0.00028104	-0.03635	-1.9546E-05	0.48631	0.00026149	537.7104179381125	66.871	1.6647	66.871	66.068	67.732	0					171	56	4	0	0	0	0.45169	1	16809	16809		5.2307	5.2307	1	944870	+		60726	17857	34916	34917	73952	73952					-0.12722990076895258
YWHGCDFF	8	Unmodified	_YWHGCDFF_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7106323242188	2	537.710545	1073.40654	0.41206	0.00022157	0.052893	2.8441E-05	0.46495	0.00025001	537.7105009732533	66.767	1.5552	66.851	66.108	67.663	0.083832					180	55	4	0	0	0	0.45169	1	16853	16853		5.2307	5.2307	1	1049600	+		60727	17857	34916	34917	73953	73953					-0.12722990076895258
YWHGCDFF	8	Unmodified	_YWHGCDFF_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.710693359375	2	537.710545	1073.40654	0.37786	0.00020318	0.14857	7.9885E-05	0.52643	0.00028307	537.7105071675057	66.834	1.4809	66.82	66.115	67.596	-0.013588					181	52	5	0	0	0	0.45169	1	16788	16788		5.2307	5.2307	1	993550	+		60728	17857	34916	34917	73954	73954					-0.12722990076895258
YWHGCDFF	8	Unmodified	_YWHGCDFF_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	537.710545	1073.40654	0.52266	0.00028104	-0.03635	-1.9546E-05	0.48631	0.00026149	537.7104179381125	66.871	1.6647	66.871	66.068	67.732	0	0.023457	-8.9232E-05	NaN	5.2307	171	56	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	944870	+		60729	17857	34916	34917							-0.12722990076895258
YWHGCDFF	8	Unmodified	_YWHGCDFF_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	537.710545	1073.40654	0.41206	0.00022157	0.052893	2.8441E-05	0.46495	0.00025001	537.7105009732533	66.767	1.5552	66.851	66.108	67.663	0.083832	0.0035947	6.7421E-06	NaN	5.2307	180	55	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1049600	+		60730	17857	34916	34917							-0.12722990076895258
YWHGCDFF	8	Unmodified	_YWHGCDFF_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	537.710545	1073.40654	0.37786	0.00020318	0.14857	7.9885E-05	0.52643	0.00028307	537.7105071675057	66.834	1.4809	66.82	66.115	67.596	-0.013588	-0.027051	0.00010963	NaN	5.2307	181	52	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	993550	+		60731	17857	34916	34917							-0.12722990076895258
YWKKYYQRRFK	11	Unmodified	_YWKKYYQRRFK_					0	0	0			REV__ENSG00000185875|ENST00000376356|THNSL1	REV__ENSG00000185875|ENST00000376356|THNSL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.92041015625	4	417.230768	1664.89397	0.26334	0.00010987	-2.3251	-0.00097009	-2.0617	-0.00086021	417.23112583244085	40.881	0.79966	40.974	40.502	41.301	0.09267					41	29	3	0	0	0	0.33352	1	8629	8629		0.08335	0.08335	1	166540	+		60732	18415	34917	34918	73955	73955					0.088114567335424
YWMHVQNTF	9	Oxidation (M)	_YWM(Oxidation (M))HVQNTF_		YWM(1)HVQNTF		YWM(210)HVQNTF	0	0	1		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24;KLHL24|p.E521D|1|0.39|ENSG00000114796|chr3:183672445-183672445|A/C|missense_variant	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.2738037109375	2	621.274041	1240.53353	0.068734	4.2703E-05	-0.26797	-0.00016648	-0.19924	-0.00012378	621.273844442341	46.424	1.1838	46.424	46.168	47.352	0					96	42	4	0	0	0	1.8572E-16	3	10438	10438;10486;10538		205.38	155.45	1	4680800			60733	2583	34918	34919	73956;73957;73958	73956		324			-0.07711688922563553
YWMHVQNTF	9	Oxidation (M)	_YWM(Oxidation (M))HVQNTF_		YWM(1)HVQNTF		YWM(210)HVQNTF	0	0	1		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24;KLHL24|p.E521D|1|0.39|ENSG00000114796|chr3:183672445-183672445|A/C|missense_variant	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.2740478515625	2	621.274041	1240.53353	-0.063183	-3.9254E-05	-0.066485	-4.1306E-05	-0.12967	-8.056E-05	621.2740407502561	46.17	0.89812	46.23	45.926	46.824	0.059837					101	32	4	0	0	0	1.8572E-16	3	10332	10332;10379;10430		205.38	155.45	1	4390000			60734	2583	34918	34919	73959;73960;73961	73959		324			-0.07711688922563553
YWMHVQNTF	9	Oxidation (M)	_YWM(Oxidation (M))HVQNTF_		YWM(1)HVQNTF		YWM(210)HVQNTF	0	0	1		ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24;KLHL24|p.E521D|1|0.39|ENSG00000114796|chr3:183672445-183672445|A/C|missense_variant	ENSG00000114796|ENST00000242810|KLHL24	ENSG00000114796|ENST00000242810|KLHL24	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.2743530273438	2	621.274041	1240.53353	0.15945	9.906E-05	-0.30132	-0.0001872	-0.14187	-8.8142E-05	621.2738078251975	46.186	1.0194	46.251	45.9	46.919	0.065048					100	36	4	0	0	0	1.8572E-16	3	10336	10336;10382;10433		205.38	155.45	1	4356200			60735	2583	34918	34919	73962;73963;73964	73962		324			-0.07711688922563553
YWNRDGIS	8	Unmodified	_YWNRDGIS_					0	0	0		ENST00000570265.5_1_15:36871929-37039277:+|nuORF	ENST00000570265.5_1_15:36871929-37039277:+|nuORF	ENST00000570265.5_1_15:36871929-37039277:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	505.73785400390625	2	505.738148	1009.46174	0.17469	8.8346E-05	-0.66294	-0.00033527	-0.48825	-0.00024693	505.737712595698	16.255	0.53964	16.255	16.035	16.574	0					32	18	2	0	0	0	0.45431	1	1252	1252		4.3292	0.38484	1	91838			60736	12020	34919	34920	73965	73965					-0.04260860284773571
YWQDENVYF	9	Unmodified	_YWQDENVYF_					0	0	0		nc|ENSG00000080854|Q9UPX0|IGSF9B;ENSG00000080854|ENST00000533871|IGSF9B	nc|ENSG00000080854|Q9UPX0|IGSF9B	nc|ENSG00000080854|Q9UPX0|IGSF9B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.8895568847656	3	421.848744	1262.5244	-0.27506	-0.00011603	-0.28781	-0.00012141	-0.56287	-0.00023745	421.84850385705704	42.217	0.93298	42.217	41.969	42.902	0					85	33	3	0	0	0	0.25756	1	9111	9111		7.1017	2.2047	1	1549400			60737	1170	34920	34921	73966	73966					-0.09635759007255729
YWQDENVYF	9	Unmodified	_YWQDENVYF_					0	0	0		nc|ENSG00000080854|Q9UPX0|IGSF9B;ENSG00000080854|ENST00000533871|IGSF9B	nc|ENSG00000080854|Q9UPX0|IGSF9B	nc|ENSG00000080854|Q9UPX0|IGSF9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.8484191894531	3	421.848744	1262.5244	0.34009	0.00014347	0.06265	2.6429E-05	0.40274	0.0001699	422.183108058361	41.627	0.88903	41.724	41.557	42.446	0.096626					61	34	2	0	0	0	0.26612	2	9028	8981;9028		9.544	3.2558	1	2859400			60738	1170	34920	34921	73967;73968	73968					-0.09635759007255729
YWRLLFKKISL	11	Unmodified	_YWRLLFKKISL_					0	0	0		ENST00000456064.1_1_20:10594086-10594842:-|nuORF;ENSG00000213551|ENST00000372950|DNAJC9	ENST00000456064.1_1_20:10594086-10594842:-|nuORF	ENST00000456064.1_1_20:10594086-10594842:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	489.2745056152344	3	489.634257	1465.88094	0.16962	8.3051E-05	1.1069	0.00054197	1.2765	0.00062503	489.6354960953511	49.159	0.6439	49.191	48.904	49.548	0.032043					62	22	4	0	0	0	0.33336	1	11329	11329		1.1098	0.65524	1	436060			60739	8350	34921	34922	73969	73969					0.16663625621504252
YWWAFLPSIS	10	Unmodified	_YWWAFLPSIS_					0	0	0			REV__ENST00000296490.7_1_3:52290064-52290199:-|nuORF	REV__ENST00000296490.7_1_3:52290064-52290199:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	423.921142578125	3	423.881608	1268.623	-0.21976	-9.3153E-05	-0.25791	-0.00010932	-0.47767	-0.00020248	423.88188737455226	18.603	0.91087	18.603	18.332	19.243	0					65	31	3	0	0	0	0.31969	1	1969	1969		3.3196	0	1	146710	+		60740	19794	34922	34923	73970	73970					-0.0005711097153380251
YWWAFLPSIS	10	Unmodified	_YWWAFLPSIS_					0	0	0			REV__ENST00000296490.7_1_3:52290064-52290199:-|nuORF	REV__ENST00000296490.7_1_3:52290064-52290199:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	423.9210510253906	3	423.881608	1268.623	-0.35088	-0.00014873	-0.42212	-0.00017893	-0.773	-0.00032766	423.8819346343258	18.782	0.8569	18.724	18.341	19.198	-0.058174					71	29	4	0	0	0	0.32068	1	2010	2010		3.5871	1.6596	1	159720	+		60741	19794	34922	34923	73971	73971					-0.0005711097153380251
YYAALKKDEF	10	Unmodified	_YYAALKKDEF_					0	0	0		L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|10|1|sense	L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|10|1|sense	L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|10|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.1888427734375	3	416.548406	1246.62339	0.22328	9.3007E-05	-0.24357	-0.00010146	-0.020288	-8.4508E-06	416.88267961537196	43.982	0.44533	44.059	43.762	44.208	0.077515					24	16	2	0	0	0	0.31847	1	9641	9641		3.5871	0	1	453180			60742	12493	34923	34924	73972	73972					0.009942639576593137
YYAALKKDEF	10	Unmodified	_YYAALKKDEF_					0	0	0		L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|10|1|sense	L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|10|1|sense	L1PA7_dup4106|chr5:32799630-32801237:+|1.0120814117850971|0.2212924775537839|2.19|529.0|10|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.5811462402344	3	416.548406	1246.62339	0.17719	7.381E-05	-0.24945	-0.00010391	-0.072253	-3.0097E-05	416.54816559309035	43.893	0.58046	43.977	43.791	44.371	0.083996					31	21	2	0	0	0	0.3156	1	9735	9735		3.5871	0	1	409070			60743	12493	34923	34924	73973	73973					0.009942639576593137
YYAEDDFDS	9	Unmodified	_YYAEDDFDS_					0	0	0			REV__ENSG00000168078|ENST00000301905|PBK	REV__ENSG00000168078|ENST00000301905|PBK	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.3480834960938	2	562.706377	1123.3982	0.19947	0.00011224	-0.86538	-0.00048695	-0.66591	-0.00037471	562.7055169395427	46.644	0.21775	46.644	46.458	46.675	0					10	7	2	0	0	0	0.25526	1	10495	10495		7.9102	2.1497	1	149910	+		60744	17437	34924	34925	73974	73974					-0.1585631030316108
YYAEVETRI	9	Unmodified	_YYAEVETRI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2877807617188	2	572.287671	1142.56079	0.48756	0.00027902	0.28788	0.00016475	0.77543	0.00044377	572.2877229541335	44.691	1.068	44.691	44.408	45.476	0					98	38	5	0	0	0	0.00051734	2	9947	9897;9947		128.93	81.338	1	3796500			60745	2452	34925	34926	73975;73976	73976					-0.004788821105421448
YYAEVETRI	9	Unmodified	_YYAEVETRI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.8092651367188	2	572.287671	1142.56079	0.57111	0.00032684	0.26974	0.00015437	0.84086	0.00048121	572.2877626220519	45.651	0.13413	45.651	45.586	45.72	0					6	4	2	0	0	0	0.25123	1	10208	10208		12.241	2.0573	1	65024			60746	2452	34925	34926	73977	73977					-0.004788821105421448
YYAEVETRI	9	Unmodified	_YYAEVETRI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2880249023438	2	572.287671	1142.56079	0.54035	0.00030924	0.13853	7.9277E-05	0.67888	0.00038852	572.2876541689707	44.44	0.98782	44.508	44.274	45.261	0.068573					92	35	4	0	0	0	0.00051734	2	9824	9824;9870		128.93	79.378	1	3872100			60747	2452	34925	34926	73978;73979	73978					-0.004788821105421448
YYAEVETRI	9	Unmodified	_YYAEVETRI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2883911132812	2	572.287671	1142.56079	0.3238	0.00018531	0.20874	0.00011946	0.53254	0.00030477	572.287741473267	44.379	1.2985	44.454	44.148	45.446	0.07505					120	47	6	0	0	0	0.00051734	1	9798	9798		128.93	67.331	1	3534300			60748	2452	34925	34926	73980	73980					-0.004788821105421448
YYAEVETRI	9	Unmodified	_YYAEVETRI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	572.287671	1142.56079	0.080323	4.5968E-05	1.4331	0.00082014	1.5134	0.0008661	572.2881362232846	45.979	0.3884	46.039	45.871	46.259	0.059837	0.11462	0.00020454	NaN	12.241	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282980			60749	2452	34925	34926							-0.004788821105421448
YYAEVETRI	9	Unmodified	_YYAEVETRI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	572.287671	1142.56079	0.37773	0.00021617	2.0825	0.0011918	2.4603	0.001408	572.2884726553481	46.018	0.27408	46.083	45.9	46.174	0.065048	0.15866	0.00094787	NaN	12.241	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248650			60750	2452	34925	34926							-0.004788821105421448
YYAEVVATNN	10	Unmodified	_YYAEVVATNN_					0	0	0		ENSG00000254415|ENST00000360844|SIGLEC14;nc|ENSG00000268500|O15389|SIGLEC5	ENSG00000254415|ENST00000360844|SIGLEC14	ENSG00000254415|ENST00000360844|SIGLEC14	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2877807617188	2	572.269478	1142.5244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.449	1	44.524	44.024	45.024	0.075047								0	0	0	0.33354	1	9843	9843		21.747	2.4897	1				60751	8610	34926	34927	73981	73981					-0.04115759007208908
YYAKEIHKF	9	Unmodified	_YYAKEIHKF_					0	0	0		nc|ENSG00000119699|P10600-2|TGFB3;ENSG00000119699|ENST00000238682|TGFB3	nc|ENSG00000119699|P10600-2|TGFB3	nc|ENSG00000119699|P10600-2|TGFB3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.8673706054688	2	599.816399	1197.61824	0.56386	0.00033821	-0.15738	-9.4399E-05	0.40648	0.00024381	599.8160415957274	26.655	0.22829	26.632	26.502	26.73	-0.022238					12	7	2	0	0	0	0.25843	1	4421	4421		5.7319	1.5423	1	69340			60752	2900	34927	34928	73982	73982					0.02734004885678587
YYALEVSYF	9	Unmodified	_YYALEVSYF_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	577.7738647460938	2	577.773865	1153.53318	0.24036	0.00013887	-0.0013557	-7.8329E-07	0.239	0.00013809	577.7736591814535	79.892	1.0458	79.892	79.467	80.513	0					97	39	4	0	0	0	0.015402	2	20756	20708;20756		71.134	40.909	1	1316500			60753	2980	34928	34929	73983;73984	73984					-0.037447853707590184
YYALEVSYF	9	Unmodified	_YYALEVSYF_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	577.7738037109375	2	577.773865	1153.53318	0.33833	0.00019548	-0.34757	-0.00020082	-0.0092414	-5.3394E-06	577.7735576665774	79.807	0.74133	79.869	79.542	80.283	0.061417					91	27	4	0	0	0	0.0032391	2	20687	20687;20731		100.37	66.269	1	1377100			60754	2980	34928	34929	73985;73986	73985					-0.037447853707590184
YYALEVSYF	9	Unmodified	_YYALEVSYF_					0	0	0		ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENSG00000121022|ENST00000357849|COPS5	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	ENST00000521386.5_1_8:67958045-67971691:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	577.7733764648438	2	577.773865	1153.53318	0.28549	0.00016495	-0.22238	-0.00012848	0.063115	3.6466E-05	577.7736243740351	79.913	0.92929	79.884	79.62	80.55	-0.028931					95	32	4	0	0	0	0.015402	3	20706	20706;20757;20808		71.134	40.909	1	1411700			60755	2980	34928	34929	73987;73988;73989	73987					-0.037447853707590184
YYALRAAGF	9	Unmodified	_YYALRAAGF_					0	0	0		ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	516.2686767578125	2	516.269084	1030.52362	0.40885	0.00021108	-0.05928	-3.0604E-05	0.34957	0.00018047	516.2689452407566	52.66	0.57732	52.66	52.382	52.96	0					43	20	3	0	0	0	0.0085732	1	12363	12363		81.613	58.465	1	769040			60756	6460	34929	34930	73990	73990					0.009574911343634085
YYALRAAGF	9	Unmodified	_YYALRAAGF_					0	0	0		ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	516.2691650390625	2	516.269084	1030.52362	0.39639	0.00020464	0.11203	5.7835E-05	0.50841	0.00026248	516.2689874973022	52.564	0.62359	52.615	52.337	52.96	0.050575					45	22	3	0	0	0	0.0085732	2	12347	12347;12397		81.613	58.465	1	740240			60757	6460	34929	34930	73991;73992	73991					0.009574911343634085
YYALRAAGF	9	Unmodified	_YYALRAAGF_					0	0	0		ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	516.2691040039062	2	516.269084	1030.52362	0.21287	0.0001099	-0.53289	-0.00027512	-0.32002	-0.00016522	516.2690737012468	52.812	0.57321	52.811	52.578	53.151	-0.00081253					48	20	5	0	0	0	0.013258	1	12434	12434		74.423	43.786	1	704590			60758	6460	34929	34930	73993	73993					0.009574911343634085
YYALTKFKK	9	Unmodified	_YYALTKFKK_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.3373413085938	2	581.336967	1160.65938	0.2462	0.00014313	0.46094	0.00026796	0.70714	0.00041109	581.3372406977547	23.946	1.2626	23.874	23.53	24.793	-0.072559					123	42	5	0	0	0	0.34374	1	3760	3760		2.3027	0.82083	1	1365000			60759	702	34930	34931	73994	73994					0.08547765925140993
YYAPIQKKW	9	Unmodified	_YYAPIQKKW_					0	0	0			REV__nc|ENSG00000183977|A8MPX8-2|PP2D1	REV__nc|ENSG00000183977|A8MPX8-2|PP2D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.3299560546875	2	598.826766	1195.63898	0.98277	0.00058851	0.15946	9.5488E-05	1.1422	0.00068399	599.3289077038565	56.504	1.8774	56.485	55.349	57.227	-0.019077					238	68	5	0	0	0	0.26879	1	13629	13629		13.508	6.2187	1	6939100	+		60760	18297	34931	34932	73995	73995					0.048985952653538334
YYASAFSMM	9	2 Oxidation (M)	_YYASAFSM(Oxidation (M))M(Oxidation (M))_		YYASAFSM(1)M(1)		YYASAFSM(200)M(200)	0	0	2		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7144775390625	2	551.714636	1101.41472	0.33503	0.00018484	-0.19079	-0.00010526	0.14424	7.9582E-05	551.7144829617171	46.603	0.88976	46.603	46.298	47.187	0					69	31	3	0	0	0	1.9541E-11	3	10479	10479;10529;10582		196.94	158.97	1	2092600			60761	8566	34932	34933	73996;73997;73998	73996		915;916			-0.13193223942425902
YYASAFSMM	9	2 Oxidation (M)	_YYASAFSM(Oxidation (M))M(Oxidation (M))_		YYASAFSM(1)M(1)		YYASAFSM(170)M(170)	0	0	2		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7142333984375	2	551.714636	1101.41472	0.47239	0.00026062	-0.61114	-0.00033718	-0.13876	-7.6553E-05	551.7143888550439	46.427	0.89489	46.48	46.143	47.038	0.052574					82	32	4	0	0	0	2.4571E-07	3	10423	10423;10471;10519		170.55	132.58	1	2143600			60762	8566	34932	34933	73999;74000;74001	73999		915;916			-0.13193223942425902
YYASAFSMM	9	2 Oxidation (M)	_YYASAFSM(Oxidation (M))M(Oxidation (M))_		YYASAFSM(1)M(1)		YYASAFSM(200)M(200)	0	0	2		nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	nc|ENSG00000244038|P39656-2|DDOST	nc|ENSG00000244038|P39656-2|DDOST	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.7146606445312	2	551.714636	1101.41472	0.23148	0.00012771	-0.41541	-0.00022919	-0.18393	-0.00010147	551.714583165927	46.425	1.0066	46.479	46.189	47.196	0.054371					89	35	4	0	0	0	1.9541E-11	3	10420	10420;10467;10512		196.94	158.97	1	2122000			60763	8566	34932	34933	74002;74003;74004	74002		915;916			-0.13193223942425902
YYASFGYQI	9	Unmodified	_YYASFGYQI_					0	0	0		ENSG00000114480|ENST00000429644|GBE1;ENST00000498468.1_1_3:81691930-81695646:-|nuORF	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	556.2586059570312	2	556.258382	1110.50221	0.34212	0.00019031	0.048777	2.7133E-05	0.3909	0.00021744	556.258386840301	68.911	1.818	68.911	68.616	70.434	0					167	65	5	0	0	0	1.8851E-11	2	17395	17350;17395		197.17	85.043	1	6039500			60764	2568	34933	34934	74005;74006	74006					-0.04861938684985034
YYASFGYQI	9	Unmodified	_YYASFGYQI_					0	0	0		ENSG00000114480|ENST00000429644|GBE1;ENST00000498468.1_1_3:81691930-81695646:-|nuORF	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	556.2586669921875	2	556.258382	1110.50221	0.41061	0.00022841	-0.038025	-2.1152E-05	0.37259	0.00020725	556.2583655435378	68.87	1.914	68.942	68.618	70.532	0.071938					160	68	5	0	0	0	1.8851E-11	3	17415	17327;17372;17415		197.17	85.043	1	5574600			60765	2568	34933	34934	74007;74008;74009	74009					-0.04861938684985034
YYASFGYQI	9	Unmodified	_YYASFGYQI_					0	0	0		ENSG00000114480|ENST00000429644|GBE1;ENST00000498468.1_1_3:81691930-81695646:-|nuORF	ENSG00000114480|ENST00000429644|GBE1	ENSG00000114480|ENST00000429644|GBE1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	556.25830078125	2	556.258382	1110.50221	0.25188	0.00014011	0.15706	8.7369E-05	0.40894	0.00022748	556.2584406264677	68.953	1.8747	68.934	68.624	70.499	-0.019157					155	67	5	0	0	0	6.7091E-11	3	17349	17349;17396;17443		181.33	73.33	1	6702000			60766	2568	34933	34934	74010;74011;74012	74010					-0.04861938684985034
YYATLLTL	8	Unmodified	_YYATLLTL_					0	0	0		ENST00000540600.5_1_11:113285027-113346393:-|nuORF;nc|ENSG00000149295|P14416-2|DRD2;ENSG00000149295|ENST00000362072|DRD2;nc|ENSG00000149295|P14416-3|DRD2	ENST00000540600.5_1_11:113285027-113346393:-|nuORF	ENST00000540600.5_1_11:113285027-113346393:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	479.2846374511719	2	479.268219	956.521884	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.816	1	95.816	95.316	96.316	0								0	0	0	0.35251	1	25584	25584		13.508	0	1				60767	4859	34934	34935	74013	74013					0.0418843732577443
YYAYIGNIL	9	Unmodified	_YYAYIGNIL_					0	0	0		nc|ENSG00000166265|Q96J86-6|CYYR1;nc|ENSG00000166265|Q96J86-5|CYYR1;nc|ENSG00000166265|Q96J86-4|CYYR1;nc|ENSG00000166265|Q96J86-3|CYYR1;nc|ENSG00000166265|Q96J86|CYYR1;ENSG00000166265|ENST00000652641|CYYR1	nc|ENSG00000166265|Q96J86-6|CYYR1	nc|ENSG00000166265|Q96J86-6|CYYR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	545.3167724609375	2	545.2844	1088.55425	0.76233	0.00041569	0.14061	7.6674E-05	0.90294	0.00049236	545.284403922096	79.028	0.73303	79.088	78.659	79.392	0.05954					54	32	2	0	0	0	0.1659	1	20460	20460		21.747	16.015	1	194930			60768	6053	34935	34936	74014	74014					0.01351224728773559
YYAYIGNIL	9	Unmodified	_YYAYIGNIL_					0	0	0		nc|ENSG00000166265|Q96J86-6|CYYR1;nc|ENSG00000166265|Q96J86-5|CYYR1;nc|ENSG00000166265|Q96J86-4|CYYR1;nc|ENSG00000166265|Q96J86-3|CYYR1;nc|ENSG00000166265|Q96J86|CYYR1;ENSG00000166265|ENST00000652641|CYYR1	nc|ENSG00000166265|Q96J86-6|CYYR1	nc|ENSG00000166265|Q96J86-6|CYYR1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.3167114257812	2	545.2844	1088.55425	0.87679	0.0004781	1.4455	0.00078823	2.3223	0.0012663	545.2843069620432	79.018	1.1215	78.989	78.349	79.471	-0.028931					100	45	3	0	0	0	0.10111	1	20519	20519		20.454	17.718	1	220140			60769	6053	34935	34936	74015	74015					0.01351224728773559
YYAYLPAKL	9	Unmodified	_YYAYLPAKL_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7839965820312	2	551.302593	1100.59063	0.49104	0.00027071	-0.084073	-4.635E-05	0.40697	0.00022436	551.3028897544764	58.586	0.64379	58.586	58.298	58.941	0					32	21	2	0	0	0	0.10111	1	14212	14212		50.855	42.945	1	1100500			60770	4035	34936	34937	74016	74016					0.04436101625469746
YYAYLPAKL	9	Unmodified	_YYAYLPAKL_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.3030395507812	2	551.302593	1100.59063	0.47139	0.00025988	-0.10597	-5.8421E-05	0.36542	0.00020146	551.3029147397714	58.358	0.70042	58.447	58.225	58.926	0.089058					37	24	2	0	0	0	0.14099	1	14165	14165		42.095	35.371	1	1085900			60771	4035	34936	34937	74017	74017					0.04436101625469746
YYAYLPAKL	9	Unmodified	_YYAYLPAKL_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	551.7839965820312	2	551.302593	1100.59063	0.67986	0.00037481	-0.36331	-0.00020029	0.31656	0.00017452	551.3027598487088	58.593	0.53151	58.579	58.358	58.889	-0.014267					28	18	2	0	0	0	0.1669	1	14197	14197		28.487	11.545	1	1168800			60772	4035	34936	34937	74018	74018					0.04436101625469746
YYDAEDESQL	10	Unmodified	_YYDAEDESQL_					0	0	0			REV__nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36	REV__nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.5035400390625	3	411.503302	1231.48808	0.21845	8.9891E-05	1.0464	0.0004306	1.2648	0.00052049	411.50371135201584	47.937	0.70369	47.937	47.682	48.386	0					47	24	3	0	0	0	0.37297	1	10962	10962		8.4443	3.5473	1	1778000	+		60773	23176	34937	34938	74019	74019					-0.11840680694604089
YYDAEDESQL	10	Unmodified	_YYDAEDESQL_					0	0	0			REV__nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36	REV__nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.5682373046875	3	411.503302	1231.48808	0.21845	8.9891E-05	1.0464	0.0004306	1.2648	0.00052049	411.50371135201584	47.937	0.70369	47.937	47.682	48.386	0					47	24	3	0	0	0	0.3183	1	10935	10935		5.4027	0.10583	1	1778000	+		60774	23176	34937	34938	74020	74020					-0.11840680694604089
YYDAEDESQL	10	Unmodified	_YYDAEDESQL_					0	0	0			REV__nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36	REV__nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.9026184082031	3	411.503302	1231.48808	0.56674	0.00023322	0.96426	0.0003968	1.531	0.00063001	411.5035852506749	47.833	0.69526	47.881	47.646	48.341	0.047523					45	25	2	0	0	0	0.3183	1	10912	10912		8.4443	5.7091	1	2283700	+		60775	23176	34937	34938	74021	74021					-0.11840680694604089
YYDAEDESQL	10	Unmodified	_YYDAEDESQL_					0	0	0			REV__nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36	REV__nc|ENSG00000211655|A0A0B4J1U3|IGLV1-36	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.56787109375	3	411.503302	1231.48808	0.36145	0.00014874	0.94241	0.0003878	1.3039	0.00053654	411.503595519751	47.872	0.65659	47.915	47.637	48.294	0.04332					43	24	2	0	0	0	0.3183	1	10945	10945		8.4443	8.4443	1	1427800	+		60776	23176	34937	34938	74022	74022					-0.11840680694604089
YYDDLKYRYF	10	Unmodified	_YYDDLKYRYF_					0	0	0		ENSG00000113532|ENST00000231461|ST8SIA4	ENSG00000113532|ENST00000231461|ST8SIA4	ENSG00000113532|ENST00000231461|ST8SIA4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	482.2660217285156	3	482.562715	1444.66632	0.12792	6.1729E-05	-0.12777	-6.1659E-05	0.00014649	7.0692E-08	482.56259549342457	53.703	0.7033	53.76	53.482	54.185	0.056259					43	26	2	0	0	0	0.31746	1	12811	12811		10.315	5.5993	1	916930			60777	2510	34938	34939	74023	74023					-0.03822965984909388
YYDDLKYRYF	10	Unmodified	_YYDDLKYRYF_					0	0	0		ENSG00000113532|ENST00000231461|ST8SIA4	ENSG00000113532|ENST00000231461|ST8SIA4	ENSG00000113532|ENST00000231461|ST8SIA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	482.56256103515625	3	482.562715	1444.66632	0.42838	0.00020672	-0.70483	-0.00034012	-0.27645	-0.0001334	482.56231249311713	54.112	0.68924	54.097	53.833	54.522	-0.015923					39	23	2	0	0	0	0.21811	1	12827	12827		30.431	19.366	1	839380			60778	2510	34938	34939	74024	74024					-0.03822965984909388
YYDDLKYRYF	10	Unmodified	_YYDDLKYRYF_					0	0	0		ENSG00000113532|ENST00000231461|ST8SIA4	ENSG00000113532|ENST00000231461|ST8SIA4	ENSG00000113532|ENST00000231461|ST8SIA4	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	482.562715	1444.66632	0.42208	0.00020368	-0.41904	-0.00020221	0.0030345	1.4643E-06	482.5624300465713	53.74	0.69418	53.74	53.468	54.162	0	-0.12512	7.7711E-06	NaN	30.431	44	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	774660			60779	2510	34938	34939							-0.03822965984909388
YYDEIINAL	9	Unmodified	_YYDEIINAL_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.277099609375	2	557.276772	1112.53899	0.22072	0.000123	-0.13991	-7.7969E-05	0.080814	4.5036E-05	557.2766418039853	75.428	0.86803	75.428	75.128	75.996	0					64	31	3	0	0	0	0.008707	1	19362	19362		88.954	20.873	1	615070			60780	7882	34939	34940	74025	74025					-0.012776868590890444
YYDEIINAL	9	Unmodified	_YYDEIINAL_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	557.2769775390625	2	557.276772	1112.53899	0.3698	0.00020608	-0.29796	-0.00016605	0.071835	4.0032E-05	557.2766010347934	75.359	0.64962	75.411	75.131	75.781	0.052361					61	23	4	0	0	0	0.08298	1	19331	19331		60.074	29.437	1	545520			60781	7882	34939	34940	74026	74026					-0.012776868590890444
YYDEIINAL	9	Unmodified	_YYDEIINAL_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	557.2767333984375	2	557.276772	1112.53899	0.40235	0.00022422	-0.33176	-0.00018488	0.07059	3.9338E-05	557.2765592838656	75.458	0.61872	75.427	75.184	75.803	-0.031487					57	22	3	0	0	0	0.0033114	1	19363	19363		99.799	31.718	1	628330			60782	7882	34939	34940	74027	74027					-0.012776868590890444
YYDFSVNYK	9	Unmodified	_YYDFSVNYK_					0	0	0			REV__ENSG00000165996|ENST00000361271|HACD1	REV__ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.7731323242188	2	599.774396	1197.53424	0.49844	0.00029895	-1.7294	-0.0010373	-1.231	-0.00073831	599.7731407981382	71.035	0.39343	71.095	70.88	71.273	0.060783					19	13	2	0	0	0	0.27532	1	18030	18030		12.532	0	1	387890	+		60783	17285	34940	34941	74028	74028					-0.05662571001857941
YYDHVAVLL	9	Unmodified	_YYDHVAVLL_					0	0	0		ENSG00000258839|ENST00000555147|MC1R	ENSG00000258839|ENST00000555147|MC1R	ENSG00000258839|ENST00000555147|MC1R	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	546.7140502929688	2	546.78985	1091.56515	0.64122	0.00035061	1.7565	0.00096046	2.3978	0.0013111	547.291639458446	64.465	0.56753	64.465	64.342	64.91	0					28	20	2	0	0	0	0.24913	1	16141	16141		12.532	0.89125	1	168890			60784	8645	34941	34942	74029	74029					0.023026271030403223
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.1891174316406	3	417.188989	1248.54514	-0.2452	-0.00010229	0.17081	7.1259E-05	-0.074393	-3.1036E-05	417.1896096095089	42.234	3.9802	42.234	41.825	45.805	0					433	145	6	0	0	0	0.0028542	8	9290	9096;9141;9190;9240;9290;9339;9386;9744		91.085	68.976	1	144960000			60785	2575	34942	34943	74030;74031;74032;74033;74034;74035;74036;74037	74034					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.27978515625	2	625.279846	1248.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.008	1	42.008	41.508	42.508	0								0	0	0	4.8182E-07	1	9104	9104		136.39	69.935	1				60786	2575	34942	34943	74038	74038					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.27978515625	2	625.279846	1248.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.16	1	42.16	41.66	42.66	0								0	0	0	4.8182E-07	1	9150	9150		136.39	88.798	1				60787	2575	34942	34943	74039	74039					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.280029296875	2	625.279846	1248.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.296	1	42.296	41.796	42.796	0								0	0	0	4.8182E-07	1	9192	9192		136.39	78.67	1				60788	2575	34942	34943	74040	74040					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.2799682617188	2	625.279846	1248.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.456	1	42.456	41.956	42.956	0								0	0	0	1.7459E-06	1	9242	9242		125.04	62.465	1				60789	2575	34942	34943	74041	74041					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.2799682617188	2	625.279846	1248.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.622	1	42.622	42.122	43.122	0								0	0	0	8.5364E-07	1	9293	9293		133.05	89.28	1				60790	2575	34942	34943	74042	74042					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.2799682617188	2	625.279846	1248.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.786	1	42.786	42.286	43.286	0								0	0	0	2.1359E-06	1	9343	9343		121.53	79.579	1				60791	2575	34942	34943	74043	74043					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.2803344726562	2	625.279846	1248.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.154	1	43.154	42.654	43.654	0								0	0	0	2.1359E-06	1	9455	9455		121.53	81.584	1				60792	2575	34942	34943	74044	74044					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.280517578125	2	625.279846	1248.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.333	1	43.333	42.833	43.833	0								0	0	0	8.5364E-07	1	9510	9510		133.05	96.546	1				60793	2575	34942	34943	74045	74045					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.2807006835938	2	625.279846	1248.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.558	1	43.558	43.058	44.058	0								0	0	0	0.0002465	1	9579	9579		110.55	77.767	1				60794	2575	34942	34943	74046	74046					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	625.2803955078125	2	625.279846	1248.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.713	1	43.713	43.213	44.213	0								0	0	0	0.00061386	1	9626	9626		100.09	73.823	1				60795	2575	34942	34943	74047	74047					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.18890380859375	3	417.188989	1248.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.286	1	44.286	43.786	44.786	0								0	0	0	0.16757	1	9803	9803		28.495	13.246	1				60796	2575	34942	34943	74048	74048					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.1888122558594	3	417.188989	1248.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.44	1	44.44	43.94	44.94	0								0	0	0	0.13597	1	9851	9851		28.495	10.121	1				60797	2575	34942	34943	74049	74049					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.18927001953125	3	417.188989	1248.54514	0.20952	8.7408E-05	-0.16072	-6.705E-05	0.048799	2.0359E-05	417.18904120383036	41.686	4.8102	41.776	41.456	46.266	0.090248					561	179	5	0	0	0	0.0024096	14	8992	8955;8992;9037;9079;9121;9165;9204;9335;9379;9427;9480;9713;9858;10010		97.741	46.326	1	191130000			60798	2575	34942	34943	74050;74051;74052;74053;74054;74055;74056;74057;74058;74059;74060;74061;74062;74063	74051					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.2799682617188	2	625.279846	1248.54514	0.055739	3.4853E-05	0.39321	0.00024587	0.44895	0.00028072	625.2800049247656	41.687	2.3727	41.777	41.456	43.829	0.090252					200	90	5	0	0	0	5.4053E-05	9	9048	8961;9000;9048;9094;9137;9183;9339;9389;9499		148.27	102.57	1	72197000			60799	2575	34942	34943	74064;74065;74066;74067;74068;74069;74070;74071;74072	74066					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.2803955078125	2	625.279846	1248.54514	0.26101	0.0001632	-0.038155	-2.3858E-05	0.22285	0.00013934	625.2799620165873	45.529	0.56931	45.589	45.223	45.792	0.059834					34	19	2	0	0	0	0.10059	1	10201	10201		38.176	22.328	1	277990			60800	2575	34942	34943	74073	74073					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.1897277832031	3	417.188989	1248.54514	0.44524	0.00018575	-0.03266	-1.3625E-05	0.41258	0.00017212	417.1891162899681	41.631	4.4449	41.728	41.313	45.758	0.096626					533	166	5	0	0	0	0.003317	11	9008	8921;8962;9008;9055;9105;9154;9281;9329;9381;9715;9853		91.085	47.103	1	206650000			60801	2575	34942	34943	74074;74075;74076;74077;74078;74079;74080;74081;74082;74083;74084	74076					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.2803344726562	2	625.279846	1248.54514	0.47565	0.00029741	0.34505	0.00021575	0.82069	0.00051316	625.2800069264188	41.636	2.9705	41.733	40.933	43.904	0.096622					217	111	5	0	0	0	5.4053E-05	10	9016	8926;8969;9016;9061;9106;9155;9318;9367;9440;9513		148.27	89.574	1	71053000			60802	2575	34942	34943	74085;74086;74087;74088;74089;74090;74091;74092;74093;74094	74087					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	625.28076171875	2	625.279846	1248.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.73	1	45.795	45.295	46.295	0.065048								0	0	0	0.12621	1	10235	10235		40.239	18.702	1				60803	2575	34942	34943	74095	74095					-0.06919168627587169
YYDNLPHY	8	Unmodified	_YYDNLPHY_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	542.8477172851562	2	542.740357	1083.46616	0.24392	0.00013238	1.6628	0.00090249	1.9068	0.0010349	542.7403734767261	42.219	0.90639	42.219	41.996	42.902	0					69	32	3	0	0	0	0.33993	1	9347	9347		16.942	4.4107	1	819950			60804	4544	34943	34944	74096	74096					-0.07223395861865356
YYDPHQATF	9	Unmodified	_YYDPHQATF_					0	0	0		nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF;nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-2|PCNX1	nc|ENSG00000100731|Q96RV3-2|PCNX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.3344116210938	2	571.251089	1140.48762	0.045591	2.6044E-05	1.0747	0.00061393	1.1203	0.00063997	571.251628087575	41.201	0.59651	41.201	40.875	41.471	0					56	21	4	0	0	0	0.075068	1	8834	8834		65.474	41.453	1	773100			60805	1625	34944	34945	74097	74097					-0.07700010833150372
YYDPHQATF	9	Unmodified	_YYDPHQATF_					0	0	0		nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF;nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-2|PCNX1	nc|ENSG00000100731|Q96RV3-2|PCNX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.3343505859375	2	571.251089	1140.48762	0.41086	0.00023471	0.49489	0.00028271	0.90576	0.00051742	571.2513022204355	40.887	0.65951	40.98	40.693	41.353	0.09267					57	24	3	0	0	0	0.067514	1	8755	8755		69.338	45.318	1	823310			60806	1625	34944	34945	74098	74098					-0.07700010833150372
YYDPHQATF	9	Unmodified	_YYDPHQATF_					0	0	0		nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF;nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-2|PCNX1	nc|ENSG00000100731|Q96RV3-2|PCNX1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.33447265625	2	571.251089	1140.48762	0.081289	4.6437E-05	0.53152	0.00030363	0.61281	0.00035007	571.2514025228495	40.783	0.62432	40.883	40.666	41.29	0.099403					53	22	3	0	0	0	0.035405	1	8725	8725		79.596	59.143	1	929330			60807	1625	34944	34945	74099	74099					-0.07700010833150372
YYDPKHVIF	9	Unmodified	_YYDPKHVIF_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000468892.5_1_3:183907488-183910505:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.3023681640625	2	591.303124	1180.5917	0.67391	0.00039848	0.22966	0.0001358	0.90356	0.00053428	591.303021907755	47.451	0.65924	47.451	47.112	47.771	0					54	23	3	0	0	0	0.047483	1	10767	10767		53.833	39.927	1	747640			60808	5511	34945	34946	74100	74100					0.008623159943681458
YYDPKHVIF	9	Unmodified	_YYDPKHVIF_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000468892.5_1_3:183907488-183910505:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.3035888671875	2	591.303124	1180.5917	0.44919	0.00026561	0.28354	0.00016766	0.73274	0.00043327	591.3030384474326	47.408	0.6381	47.46	47.062	47.7	0.052574					54	23	3	0	0	0	0.023967	2	10746	10746;10797		62.573	44.2	1	783560			60809	5511	34945	34946	74101;74102	74101					0.008623159943681458
YYDPKHVIF	9	Unmodified	_YYDPKHVIF_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000468892.5_1_3:183907488-183910505:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.3032836914062	2	591.303124	1180.5917	0.90946	0.00053777	-0.27176	-0.00016069	0.6377	0.00037707	591.3027063915296	47.401	0.69323	47.454	47.062	47.755	0.053013					56	25	3	0	0	0	0.03069	2	10776	10727;10776		60.074	36.053	1	1009600			60810	5511	34945	34946	74103;74104	74104					0.008623159943681458
YYDYISPRF	9	Unmodified	_YYDYISPRF_					0	0	0		nc|ENSG00000197444|Q9ULD0-2|OGDHL;ENSG00000197444|ENST00000374103|OGDHL;ENST00000490844.1_1_10:50943276-50946169:-|nuORF;nc|ENSG00000197444|Q9ULD0-3|OGDHL	nc|ENSG00000197444|Q9ULD0-2|OGDHL	nc|ENSG00000197444|Q9ULD0-2|OGDHL	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.8058471679688	2	612.290214	1222.56587	0.71397	0.00043716	-0.9129	-0.00055896	-0.19893	-0.0001218	612.2891680233506	60.56	0.25495	60.657	60.552	60.807	0.096985					13	8	2	0	0	0	0.24311	1	14791	14791		16.942	0	1	130270			60811	7964	34946	34947	74105	74105					-0.03650578247925296
YYEEFPINL	9	Unmodified	_YYEEFPINL_					0	0	0		ENSG00000141012|ENST00000268695|GALNS;ENST00000568613.5_1_16:88880849-88909575:-|nuORF	ENSG00000141012|ENST00000268695|GALNS	ENSG00000141012|ENST00000268695|GALNS	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	593.8283081054688	2	594.284597	1186.55464	0.27974	0.00016624	1.5373	0.00091357	1.817	0.0010798	594.2852606891802	80.762	0.27296	80.827	80.656	80.929	0.065094					15	10	2	0	0	0	0.25779	1	20968	20968		6.2058	4.1198	1	131140			60812	4352	34947	34948	74106	74106					-0.031174003420346708
YYEEFPINL	9	Unmodified	_YYEEFPINL_					0	0	0		ENSG00000141012|ENST00000268695|GALNS;ENST00000568613.5_1_16:88880849-88909575:-|nuORF	ENSG00000141012|ENST00000268695|GALNS	ENSG00000141012|ENST00000268695|GALNS	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	594.2852783203125	2	594.284597	1186.55464	0.40672	0.00024171	1.1099	0.00065961	1.5166	0.00090132	594.2849622456941	80.866	0.45683	80.839	80.652	81.109	-0.026825					26	18	2	0	0	0	0.19747	1	21036	21036		24.021	11.489	1	132070			60813	4352	34947	34948	74107	74107					-0.031174003420346708
YYEEQHPEL	9	Unmodified	_YYEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.26708984375	2	604.266936	1206.51932	0.46368	0.00028018	-0.079949	-4.831E-05	0.38373	0.00023187	604.2673569713872	38.131	3.4778	38.131	37.532	41.01	0					347	125	6	0	0	0	3.5809E-25	12	8001	7821;7872;7913;7959;8001;8044;8096;8146;8198;8333;8401;8541		249.11	190.43	1	45677000			60814	400	34948	34949	74108;74109;74110;74111;74112;74113;74114;74115;74116;74117;74118;74119	74112					-0.07568062869859205
YYEEQHPEL	9	Unmodified	_YYEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.2672729492188	2	604.266936	1206.51932	0.57296	0.00034622	-0.23488	-0.00014193	0.33808	0.00020429	604.2672812046527	37.996	3.2412	38.087	37.555	40.797	0.090881					333	117	6	0	0	0	8.7734E-17	9	7831	7786;7831;7880;7921;7969;8014;8065;8115;8295		216.57	166.63	1	42661000			60815	400	34948	34949	74120;74121;74122;74123;74124;74125;74126;74127;74128	74121					-0.07568062869859205
YYEEQHPEL	9	Unmodified	_YYEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.267822265625	2	604.266936	1206.51932	0.31553	0.00019067	0.055292	3.3411E-05	0.37083	0.00022408	604.2674505870688	37.955	3.4057	38.052	37.452	40.858	0.097527					334	123	6	0	0	0	8.7734E-17	11	7884	7748;7793;7834;7884;7930;7973;8023;8074;8124;8276;8357		216.57	166.63	1	41874000			60816	400	34948	34949	74129;74130;74131;74132;74133;74134;74135;74136;74137;74138;74139	74132					-0.07568062869859205
YYEHEFVEL	9	Unmodified	_YYEHEFVEL_					0	0	0		ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	614.77978515625	2	614.779679	1227.5448	0.72806	0.0004476	-0.38571	-0.00023712	0.34236	0.00021048	614.7792387893195	56.224	1.6171	56.224	55.935	57.552	0					125	59	4	0	0	0	9.3868E-05	3	13486	13439;13486;13535		141.83	109.04	1	5006300			60817	6070	34949	34950	74140;74141;74142	74141					-0.05986588347423094
YYEHEFVEL	9	Unmodified	_YYEHEFVEL_					0	0	0		ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	614.7797241210938	2	614.779679	1227.5448	0.701	0.00043096	-0.37941	-0.00023326	0.32159	0.0001977	614.7792815129465	56.145	1.3205	56.216	55.932	57.253	0.070885					121	48	3	0	0	0	0.00056175	3	13437	13437;13447;13488		128.37	95.58	1	4720400			60818	6070	34949	34950	74143;74144;74145	74143					-0.05986588347423094
YYEHEFVEL	9	Unmodified	_YYEHEFVEL_					0	0	0		ENSG00000166377|ENST00000426216|ATP9B;nc|ENSG00000166377|O43861-2|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	ENSG00000166377|ENST00000426216|ATP9B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	614.7801513671875	2	614.779679	1227.5448	0.85147	0.00052346	-0.24783	-0.00015236	0.60364	0.0003711	614.7793986191488	56.393	1.4196	56.374	56.133	57.553	-0.019081					134	51	4	0	0	0	9.3868E-05	3	13552	13505;13552;13597		141.83	109.04	1	5352600			60819	6070	34949	34950	74146;74147;74148	74147					-0.05986588347423094
YYEHVKARF	9	Unmodified	_YYEHVKARF_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.87689208984375	3	404.876857	1211.60874	-0.194	-7.8545E-05	0.25767	0.00010432	0.063673	2.578E-05	404.8769684372623	26.479	1.0776	26.479	26.189	27.266	0					112	37	4	0	0	0	0.03069	1	4376	4376		55.235	39.986	1	1149100			60820	2666	34950	34951	74149	74149					0.011402366001675546
YYEHVKARF	9	Unmodified	_YYEHVKARF_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	404.87689208984375	3	404.876857	1211.60874	0.052776	2.1368E-05	-0.055125	-2.2319E-05	-0.0023487	-9.5094E-07	404.8768609913409	26.619	1.2737	26.597	26.185	27.459	-0.022236					117	44	4	0	0	0	0.03069	1	4398	4398		47.732	32.483	1	1442100			60821	2666	34950	34951	74150	74150					0.011402366001675546
YYEIKKLDE	9	Unmodified	_YYEIKKLDE_					0	0	0			REV__ENST00000603513.1_1_7:130039868-130040375:-|nuORF	REV__ENST00000603513.1_1_7:130039868-130040375:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.2691650390625	2	600.810979	1199.6074	0.29053	0.00017456	0.59363	0.00035666	0.88416	0.00053122	600.8113231273958	18.711	0.67815	18.711	18.505	19.183	0					44	23	3	0	0	0	0.26145	1	1984	1984		2.0598	0	1	92831	+		60822	14523	34951	34952	74151	74151					0.015585577207730239
YYEITHIY	8	Unmodified	_YYEITHIY_					0	0	0			REV__L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|30|3|sense	REV__L1ME3B_dup1212|chr2:208655412-208656218:+|1.11840693144123|0.1645806624656867|2.76|518.0|30|3|sense	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	551.7818603515625	2	551.266207	1100.51786	1.0529	0.00058045	1.2249	0.00067527	2.2779	0.0012557	551.2665891941854	56.131	0.48929	56.131	55.854	56.344	0					39	17	3	0	0	0	0.41097	1	13421	13421		18.135	0	1	1599500	+		60823	22788	34952	34953	74152	74152					-0.028376521679547295
YYEKIERTT	9	Unmodified	_YYEKIERTT_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.7904663085938	2	601.806228	1201.5979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.083	1	85.07	84.57	85.57	-0.01284								0	0	0	0.24066	1	22320	22320		9.3831	1.2276	1				60824	3583	34953	34954	74153	74153					0.005167894352325675
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	421.872802734375	3	421.873001	1262.59717	0.27406	0.00011562	0.46088	0.00019443	0.73494	0.00031005	421.8730152683572	45.674	1.0593	45.674	45.238	46.298	0					128	38	6	0	0	0	0.0098873	2	10194	10194;10240		73.196	49.406	1	2458500			60825	3638	34954	34955	74154;74155	74154					-0.023620052138085157
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.305908203125	2	632.305864	1262.59717	0.68483	0.00043302	-0.042069	-2.66E-05	0.64276	0.00040642	632.3055887770494	45.67	0.71347	45.67	45.341	46.055	0					66	25	4	0	0	0	0.00012746	1	10228	10228		136.39	110.12	1	842670			60826	3638	34954	34955	74156	74156					-0.023620052138085157
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	421.87298583984375	3	421.873001	1262.59717	0.21616	9.1192E-05	0.17393	7.3376E-05	0.39009	0.00016457	421.87297325172244	45.268	1.1576	45.336	44.894	46.051	0.067978					128	40	6	0	0	0	0.014206	3	10107	10063;10107;10153		75.571	42.785	1	2803100			60827	3638	34954	34955	74157;74158;74159	74158					-0.023620052138085157
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.3060913085938	2	632.305864	1262.59717	0.56697	0.0003585	0.042733	2.702E-05	0.6097	0.00038552	632.3056115131226	45.28	0.73886	45.343	45.056	45.795	0.062515					75	25	4	0	0	0	0.0008224	2	10081	10081;10139		125.04	101.25	1	771250			60828	3638	34954	34955	74160;74161	74160					-0.023620052138085157
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	421.87298583984375	3	421.873001	1262.59717	0.14442	6.0926E-05	0.29498	0.00012445	0.4394	0.00018537	421.8730075027979	45.26	1.2977	45.325	44.849	46.146	0.065048					127	47	5	0	0	0	0.023967	2	10061	10061;10107		57.249	38.876	1	3062300			60829	3638	34954	34955	74162;74163	74162					-0.023620052138085157
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.305908203125	2	632.305864	1262.59717	0.54142	0.00034234	0.13304	8.4122E-05	0.67446	0.00042647	632.3057049045146	45.293	0.72026	45.358	45.032	45.753	0.065048					81	26	5	0	0	0	0.0008224	2	10077	10077;10124		125.04	101.25	1	771190			60830	3638	34954	34955	74164;74165	74164					-0.023620052138085157
YYEKQFPEI	9	Unmodified	_YYEKQFPEI_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000141027|O75376-3|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000196498|Q9Y618-5|NCOR2;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	608.799072265625	2	608.797872	1215.58119	0.45628	0.00027778	0.51762	0.00031513	0.9739	0.00059291	608.7983054365664	51.541	0.96774	51.541	51.271	52.239	0					101	35	4	0	0	0	0.00010651	6	12006	12006;12058;12112;12125;12174;12234		139.78	96.009	1	3487400			60831	7872;4353	34955	34956	74166;74167;74168;74169;74170;74171	74166					-0.017977114506948055
YYEKQFPEI	9	Unmodified	_YYEKQFPEI_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000141027|O75376-3|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000196498|Q9Y618-5|NCOR2;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	608.798828125	2	608.797872	1215.58119	0.39812	0.00024238	0.67161	0.00040888	1.0697	0.00065125	608.798382953941	51.484	0.97878	51.53	51.271	52.25	0.046577					91	35	4	0	0	0	3.4202E-05	5	11999	11999;12046;12097;12112;12163		151.48	151.48	1	4126800			60832	7872;4353	34955	34956	74172;74173;74174;74175;74176	74172					-0.017977114506948055
YYEKQFPEI	9	Unmodified	_YYEKQFPEI_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000141027|O75376-3|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000196498|Q9Y618-5|NCOR2;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.7984619140625	2	608.797872	1215.58119	0.2251	0.00013704	0.83838	0.00051041	1.0635	0.00064745	608.7985451388553	51.689	1.1036	51.699	51.402	52.506	0.0095634					124	40	5	0	0	0	3.4202E-05	6	12078	12028;12078;12128;12164;12210;12262		151.48	151.48	1	3348700			60833	7872;4353	34955	34956	74177;74178;74179;74180;74181;74182	74178					-0.017977114506948055
YYEKQFPEI	9	Unmodified	_YYEKQFPEI_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000141027|O75376-3|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000196498|Q9Y618-5|NCOR2;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	608.2807006835938	2	608.797872	1215.58119	0.29524	0.00017974	-2.9311	-0.0017845	-2.6359	-0.0016047	608.798330875015	53.018	0.35572	53.009	52.761	53.117	-0.0096054					15	12	2	0	0	0	0.22143	1	12437	12437		19.362	10.015	1	160120			60834	7872;4353	34955	34956	74183	74183					-0.017977114506948055
YYEPFGPDECT	11	Unmodified	_YYEPFGPDECT_					0	0	0		ENSG00000117069|ENST00000477717|ST6GALNAC5	ENSG00000117069|ENST00000477717|ST6GALNAC5	ENSG00000117069|ENST00000477717|ST6GALNAC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	440.8416442871094	3	440.84115	1319.50162	0.23662	0.00010431	0.79713	0.00035141	1.0337	0.00045572	440.8417026606698	56.836	0.86508	56.836	56.66	57.525	0					44	31	2	0	0	0	0.44713	1	13687	13687		5.0475	1.7279	1	530100			60835	2772	34956	34957	74184	74184					-0.14535146187017745
YYEPFGPDECT	11	Unmodified	_YYEPFGPDECT_					0	0	0		ENSG00000117069|ENST00000477717|ST6GALNAC5	ENSG00000117069|ENST00000477717|ST6GALNAC5	ENSG00000117069|ENST00000477717|ST6GALNAC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	440.84185791015625	3	440.84115	1319.50162	0.11464	5.0537E-05	1.1818	0.000521	1.2965	0.00057154	440.8416813080791	57.15	0.57772	57.131	56.944	57.522	-0.019077					44	20	4	0	0	0	0.46392	1	13788	13788		2.8433	2.8433	1	447240			60836	2772	34956	34957	74185	74185					-0.14535146187017745
YYEYNHDLF	9	Unmodified	_YYEYNHDLF_					0	0	0		ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.2699584960938	2	632.269478	1262.5244	0.69241	0.00043779	-0.17343	-0.00010965	0.51898	0.00032814	632.2693596152801	54.892	1.1556	54.892	54.602	55.758	0					89	41	4	0	0	0	0.0028542	3	13100	13049;13100;13150		103.42	83.005	1	2452300			60837	4983	34957	34958	74186;74187;74188	74187					-0.09635759007255729
YYEYNHDLF	9	Unmodified	_YYEYNHDLF_					0	0	0		ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.2696533203125	2	632.269478	1262.5244	0.62612	0.00039587	-0.30058	-0.00019005	0.32553	0.00020583	632.2692703321969	54.844	1.2069	54.907	54.589	55.796	0.063202					102	44	4	0	0	0	0.0024096	3	13061	13019;13061;13113		106.94	82.92	1	3190200			60838	4983	34957	34958	74189;74190;74191	74190					-0.09635759007255729
YYEYNHDLF	9	Unmodified	_YYEYNHDLF_					0	0	0		ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.2696533203125	2	632.269478	1262.5244	0.61874	0.00039121	0.028388	1.7949E-05	0.64713	0.00040916	632.2694580065083	55.161	1.0625	55.142	54.761	55.824	-0.019081					92	39	4	0	0	0	0.0037449	2	13183	13133;13183		96.367	72.346	1	2202100			60839	4983	34957	34958	74192;74193	74193					-0.09635759007255729
YYFDYKEQL	9	Unmodified	_YYFDYKEQL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.302978515625	2	634.795329	1267.5761	0.48395	0.00030721	-0.72713	-0.00046158	-0.24318	-0.00015437	634.7948867936111	57.245	0.28053	57.324	57.178	57.458	0.079224					21	9	3	0	0	0	0.11234	1	13805	13805		43.772	31.241	1	361710			60840	1486	34958	34959	74194	74194					-0.046980153133290514
YYFDYKEQL	9	Unmodified	_YYFDYKEQL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.303466796875	2	634.795329	1267.5761	0.38881	0.00024681	-2.1455	-0.0013619	-1.7567	-0.0011151	634.7938051131274	57.612	0.24446	57.595	57.471	57.716	-0.0172					11	8	2	0	0	0	0.21623	1	13920	13920		27.223	15.729	1	444810			60841	1486	34958	34959	74195	74195					-0.046980153133290514
YYFEGIKQTF	10	Unmodified	_YYFEGIKQTF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	648.3186645507812	2	648.318971	1294.62339	0.33959	0.00022016	0.13766	8.9247E-05	0.47725	0.00030941	648.318952905074	61.2	1.8952	61.2	60.936	62.832	0					200	70	4	0	0	0	3.2772E-20	5	14981	14981;15033;15137;15187;15237		203.64	125.58	1	11940000			60842	1609	34959	34960	74196;74197;74198;74199;74200	74196					-0.012137360423594146
YYFEGIKQTF	10	Unmodified	_YYFEGIKQTF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	648.3192138671875	2	648.318971	1294.62339	0.18759	0.00012162	0.18043	0.00011697	0.36801	0.00023859	648.3190082863962	61.122	1.5454	61.219	60.925	62.471	0.096989					170	56	4	0	0	0	6.230599999999999E-21	6	14985	14940;14985;15037;15088;15178;15241		222.22	144.39	1	11418000			60843	1609	34959	34960	74201;74202;74203;74204;74205;74206	74202					-0.012137360423594146
YYFEGIKQTF	10	Unmodified	_YYFEGIKQTF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	648.3192749023438	2	648.318971	1294.62339	0.17875	0.00011589	0.29823	0.00019335	0.47698	0.00030924	648.3190416215134	61.203	1.9939	61.194	60.944	62.937	-0.0094566					203	73	4	0	0	0	6.230599999999999E-21	5	15019	14966;15019;15118;15191;15266		222.22	139.14	1	13934000			60844	1609	34959	34960	74207;74208;74209;74210;74211	74208					-0.012137360423594146
YYFEVVQKL	9	Unmodified	_YYFEVVQKL_					0	0	0		ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.2762451171875	2	594.818607	1187.62266	0.54652	0.00032508	-1.5168	-0.0009022	-0.97025	-0.00057712	594.8177289537804	63.561	0.40643	63.561	63.364	63.771	0					19	14	2	0	0	0	0.25202	1	15699	15699		10.824	3.5347	1	209030			60845	1261	34960	34961	74212	74212					0.036354693086195766
YYFEYTDTF	9	Unmodified	_YYFEYTDTF_					0	0	0		nc|ENSG00000117598|Q32ZL2-2|PLPPR5;chr1:98893104-98914801|372|15.53|0.84|4.22|-|ENST00000370188|PLPPR5,PLPPR5;ENSG00000117598|ENST00000263177|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.2188415527344	3	416.841367	1247.50227	-0.26207	-0.00010924	-2.498	-0.0010413	-2.7601	-0.0011505	416.84018557488247	38.544	0.30191	38.544	38.295	38.597	0					15	10	2	0	0	0	0.259	1	7983	7983		5.2969	5.157	1	88539			60846	114	34961	34962	74213	74213					-0.11157983475663968
YYFEYTDTF	9	Unmodified	_YYFEYTDTF_					0	0	0		nc|ENSG00000117598|Q32ZL2-2|PLPPR5;chr1:98893104-98914801|372|15.53|0.84|4.22|-|ENST00000370188|PLPPR5,PLPPR5;ENSG00000117598|ENST00000263177|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.7574462890625	2	624.758412	1247.50227	0.098277	6.1399E-05	-0.98891	-0.00061783	-0.89063	-0.00055643	624.7574871340404	75.291	0.3486	75.344	75.187	75.536	0.052361					27	12	3	0	0	0	0.0054984	1	19333	19333		96.285	82.379	1	210420			60847	114	34961	34962	74214	74214					-0.11157983475663968
YYFEYTDTF	9	Unmodified	_YYFEYTDTF_					0	0	0		nc|ENSG00000117598|Q32ZL2-2|PLPPR5;chr1:98893104-98914801|372|15.53|0.84|4.22|-|ENST00000370188|PLPPR5,PLPPR5;ENSG00000117598|ENST00000263177|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.7584228515625	2	624.758412	1247.50227	0.3655	0.00022835	-0.87094	-0.00054412	-0.50544	-0.00031578	624.7578064877522	75.421	0.40372	75.39	75.184	75.588	-0.031487					34	14	3	0	0	0	0.011693	1	19372	19372		96.285	77.912	1	329310			60848	114	34961	34962	74215	74215					-0.11157983475663968
YYFEYTDTF	9	Unmodified	_YYFEYTDTF_					0	0	0		nc|ENSG00000117598|Q32ZL2-2|PLPPR5;chr1:98893104-98914801|372|15.53|0.84|4.22|-|ENST00000370188|PLPPR5,PLPPR5;ENSG00000117598|ENST00000263177|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.21875	3	416.841367	1247.50227	0.20336	8.477E-05	-3.2963	-0.001374	-3.0929	-0.0012892	416.83944176503576	38.356	0.66012	38.453	38.122	38.782	0.097527					30	23	2	0	0	0	0.259	1	7932	7932		5.2969	4.1871	1	111000			60849	114	34961	34962	74216	74216					-0.11157983475663968
YYFEYTDTF	9	Unmodified	_YYFEYTDTF_					0	0	0		nc|ENSG00000117598|Q32ZL2-2|PLPPR5;chr1:98893104-98914801|372|15.53|0.84|4.22|-|ENST00000370188|PLPPR5,PLPPR5;ENSG00000117598|ENST00000263177|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	nc|ENSG00000117598|Q32ZL2-2|PLPPR5	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	624.758412	1247.50227	0.29974	0.00018726	-0.92683	-0.00057904	-0.62709	-0.00039178	624.7580295743319	75.354	0.49537	75.354	75.154	75.649	0	-0.0085393	2.228E-05	NaN	96.285	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210140			60850	114	34961	34962							-0.11157983475663968
YYFMVLIK	8	Unmodified	_YYFMVLIK_					0	0	0			REV__ENSG00000066185|ENST00000372565|ZMYND12;REV__ENST00000475426.1_1_1:42898780-42901095:-|nuORF	REV__ENSG00000066185|ENST00000372565|ZMYND12	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7960205078125	2	538.796089	1075.57763	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.4	1	114.42	113.92	114.92	0.016708								0	0	0	0.37595	1	29749	29749		2.8892	0.31174	1		+		60851	13677;21406	34962	34963	74217	74217					0.042859472417148936
YYFPVKNVI	9	Unmodified	_YYFPVKNVI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.815673828125	2	571.815867	1141.61718	0.26686	0.00015259	-0.45036	-0.00025752	-0.1835	-0.00010493	571.8155376285214	63.198	0.9848	63.198	62.93	63.915	0					107	35	5	0	0	0	0.037153	1	15610	15610		74.423	42.117	1	4966800			60852	7801	34963	34964	74218	74218					0.052037905167935605
YYFRSTNPDF	10	Unmodified	_YYFRSTNPDF_					0	0	0			REV__nc|ENSG00000147799|Q9C0H5|ARHGAP39	REV__nc|ENSG00000147799|Q9C0H5|ARHGAP39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	436.8945617675781	3	437.199777	1308.5775	0.02141	9.3603E-06	0.2185	9.5527E-05	0.23991	0.00010489	437.1998762112055	51.69	0.53855	51.69	51.43	51.969	0					29	19	2	0	0	0	0.31994	1	12159	12159		5.4027	1.5264	1	416140	+		60853	16406	34964	34965	74219	74219					-0.06444381224582685
YYFRSTNPDF	10	Unmodified	_YYFRSTNPDF_					0	0	0			REV__nc|ENSG00000147799|Q9C0H5|ARHGAP39	REV__nc|ENSG00000147799|Q9C0H5|ARHGAP39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	436.8944396972656	3	437.199777	1308.5775	-0.16239	-7.0997E-05	0.71575	0.00031293	0.55336	0.00024193	437.20013657615596	51.83	0.53603	51.829	51.71	52.246	-0.00080872					33	19	2	0	0	0	0.3183	1	12176	12176		8.4443	1.8139	1	263900	+		60854	16406	34964	34965	74220	74220					-0.06444381224582685
YYFRSTNPDF	10	Unmodified	_YYFRSTNPDF_					0	0	0			REV__nc|ENSG00000147799|Q9C0H5|ARHGAP39	REV__nc|ENSG00000147799|Q9C0H5|ARHGAP39	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	437.199777	1308.5775	0.047254	2.0659E-05	0.078277	3.4223E-05	0.12553	5.4882E-05	437.1998215846616	51.677	0.30093	51.723	51.595	51.896	0.046574	-0.024386	-0.0003664	NaN	8.4443	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	426660	+		60855	16406	34964	34965							-0.06444381224582685
YYFSKLIEF	9	Unmodified	_YYFSKLIEF_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	605.3131713867188	2	605.313158	1208.61176	0.35188	0.000213	-0.078046	-4.7243E-05	0.27383	0.00016576	605.3131485333116	75.473	0.61497	75.473	75.235	75.85	0					49	21	3	0	0	0	0.12279	1	19461	19461		34.932	17.819	1	437680			60856	453	34965	34966	74221	74221					0.01580066934320712
YYFSKLIEF	9	Unmodified	_YYFSKLIEF_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	605.3130493164062	2	605.313158	1208.61176	0.5368	0.00032493	-0.1865	-0.00011289	0.3503	0.00021204	605.3130913474957	75.435	0.77826	75.487	75.269	76.047	0.052361					56	28	3	0	0	0	0.038291	1	19420	19420		57.249	24.463	1	446810			60857	453	34965	34966	74222	74222					0.01580066934320712
YYFSKLIEF	9	Unmodified	_YYFSKLIEF_					0	0	0		ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	ENSG00000012660|ENST00000304434|ELOVL5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	605.3128662109375	2	605.313158	1208.61176	0.45568	0.00027583	-0.0081848	-4.9544E-06	0.44749	0.00027087	605.3132288608339	75.548	0.59594	75.517	75.207	75.803	-0.031487					57	21	4	0	0	0	0.10812	1	19464	19464		37.075	20.132	1	656040			60858	453	34965	34966	74223	74223					0.01580066934320712
YYFSTISSSF	10	Unmodified	_YYFSTISSSF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	601.743896484375	2	601.274229	1200.53391	0.82208	0.00049429	-0.97218	-0.00058455	-0.1501	-9.0254E-05	601.273079129712	74.81	0.47713	74.81	74.566	75.043	0					33	16	3	0	0	0	0.018176	1	19208	19208		88.954	63.963	1	460110			60859	8538	34966	34967	74224	74224					-0.058339907217032305
YYFSTISSSF	10	Unmodified	_YYFSTISSSF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.7559814453125	2	601.274229	1200.53391	0.51376	0.00030891	-0.49402	-0.00029704	0.019748	1.1874E-05	601.2734410733269	74.749	0.4357	74.802	74.64	75.076	0.052361					37	15	3	0	0	0	0.045007	1	19184	19184		81.89	59.232	1	402310			60860	8538	34966	34967	74225	74225					-0.058339907217032305
YYFSTISSSF	10	Unmodified	_YYFSTISSSF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	601.2739868164062	2	601.274229	1200.53391	0.66342	0.0003989	-0.23213	-0.00013958	0.43128	0.00025932	601.2736574512145	74.899	0.52209	74.868	74.613	75.135	-0.031479					38	18	3	0	0	0	0.014158	1	19223	19223		85.642	62.983	1	431790			60861	8538	34966	34967	74226	74226					-0.058339907217032305
YYGALLYAMQ	10	Unmodified	_YYGALLYAMQ_					0	0	0			REV__ENST00000545459.5_1_12:7090966-7091923:-|nuORF	REV__ENST00000545459.5_1_12:7090966-7091923:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	596.7890625	2	596.788992	1191.56343	0.46755	0.00027903	-0.10476	-6.2517E-05	0.36279	0.00021651	596.7888318360597	38.417	0.65466	38.515	38.266	38.921	0.097527					63	23	3	0	0	0	0.39745	1	8091	8091		3.9444	1.6417	1	1361900	+		60862	14732	34967	34968	74227	74227					-0.024687499772198862
YYGHKERFI	9	Unmodified	_YYGHKERFI_					0	0	0			REV__nc|ENSG00000198574|O14796-2|SH2D1B	REV__nc|ENSG00000198574|O14796-2|SH2D1B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.8537902832031	3	404.876857	1211.60874	-0.21734	-8.7997E-05	0.31042	0.00012568	0.093082	3.7687E-05	404.8769723628597	26.497	1.239	26.458	26.01	27.249	-0.038671					119	43	4	0	0	0	0.25756	1	4592	4592		7.1017	0.47135	1	1188300	+		60863	18835	34968	34969	74228	74228					0.01140236600190292
YYGILQEKI	9	Unmodified	_YYGILQEKI_					0	0	0		ENST00000508607.1_1_17:47783564-47785273:-|nuORF;ENST00000509781.5_1_17:47783523-47785306:-|nuORF;ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1	ENST00000508607.1_1_17:47783564-47785273:-|nuORF	ENST00000508607.1_1_17:47783564-47785273:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	563.8104858398438	2	563.810782	1125.60701	0.96984	0.0005468	-0.93473	-0.00052701	0.03511	1.9795E-05	563.8100170390012	55.981	0.50931	55.981	55.758	56.267	0					28	17	3	0	0	0	0.001957	1	13403	13403		110.55	70.603	1	1200600			60864	2988	34969	34970	74229	74229					0.049231827915718895
YYGILQEKI	9	Unmodified	_YYGILQEKI_					0	0	0		ENST00000508607.1_1_17:47783564-47785273:-|nuORF;ENST00000509781.5_1_17:47783523-47785306:-|nuORF;ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1	ENST00000508607.1_1_17:47783564-47785273:-|nuORF	ENST00000508607.1_1_17:47783564-47785273:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.2681274414062	2	563.810782	1125.60701	0.80868	0.00045594	-0.80239	-0.0004524	0.0062887	3.5456E-06	563.810149144389	55.92	0.46128	55.991	55.751	56.213	0.070889					26	16	3	0	0	0	0.067763	1	13412	13412		59.368	30.287	1	1081600			60865	2988	34969	34970	74230	74230					0.049231827915718895
YYGILQEKI	9	Unmodified	_YYGILQEKI_					0	0	0		ENST00000508607.1_1_17:47783564-47785273:-|nuORF;ENST00000509781.5_1_17:47783523-47785306:-|nuORF;ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1	ENST00000508607.1_1_17:47783564-47785273:-|nuORF	ENST00000508607.1_1_17:47783564-47785273:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.8109741210938	2	563.810782	1125.60701	0.82957	0.00046772	-0.5752	-0.0003243	0.25437	0.00014342	563.8102774774918	56.211	0.36104	56.192	55.965	56.326	-0.019081					19	12	2	0	0	0	0.015027	1	13481	13481		71.708	44.824	1	1198700			60866	2988	34969	34970	74231	74231					0.049231827915718895
YYGKHYSTF	9	Unmodified	_YYGKHYSTF_					0	0	0		nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;nc|ENSG00000166348|Q70EL1-4|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	583.2561645507812	2	583.269281	1164.52401	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.231	1	71.231	70.731	71.731	0								0	0	0	0.21357	1	18096	18096		18.135	6.4947	1				60867	6066	34970	34971	74232	74232					-0.05167133936447499
YYGLYRDLF	9	Unmodified	_YYGLYRDLF_					0	0	0		ENST00000494179.5_1_17:73897660-73900929:-|nuORF;ENST00000477736.5_1_17:73897061-73900795:-|nuORF;ENST00000493104.5_1_17:73897660-73900929:-|nuORF;ENSG00000204316|ENST00000309352|MRPL38	ENST00000494179.5_1_17:73897660-73900929:-|nuORF	ENST00000494179.5_1_17:73897660-73900929:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	604.7775268554688	2	605.300581	1208.58661	0.54071	0.00032729	0.4377	0.00026494	0.9784	0.00059223	605.3004058227089	68.488	0.29439	68.488	68.381	68.675	0					15	10	2	0	0	0	0.24471	1	17281	17281		17.113	9.8237	1	272000			60868	8215	34971	34972	74233	74233					-0.00933987868256736
YYGLYRDLF	9	Unmodified	_YYGLYRDLF_					0	0	0		ENST00000494179.5_1_17:73897660-73900929:-|nuORF;ENST00000477736.5_1_17:73897061-73900795:-|nuORF;ENST00000493104.5_1_17:73897660-73900929:-|nuORF;ENSG00000204316|ENST00000309352|MRPL38	ENST00000494179.5_1_17:73897660-73900929:-|nuORF	ENST00000494179.5_1_17:73897660-73900929:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	604.7776489257812	2	605.300581	1208.58661	0.46038	0.00027867	0.095644	5.7893E-05	0.55602	0.00033656	605.3003669991023	68.507	0.50227	68.579	68.304	68.806	0.071938					24	18	2	0	0	0	0.18123	1	17254	17254		34.402	21.359	1	286770			60869	8215	34971	34972	74234	74234					-0.00933987868256736
YYGLYRDLF	9	Unmodified	_YYGLYRDLF_					0	0	0		ENST00000494179.5_1_17:73897660-73900929:-|nuORF;ENST00000477736.5_1_17:73897061-73900795:-|nuORF;ENST00000493104.5_1_17:73897660-73900929:-|nuORF;ENSG00000204316|ENST00000309352|MRPL38	ENST00000494179.5_1_17:73897660-73900929:-|nuORF	ENST00000494179.5_1_17:73897660-73900929:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	604.7774658203125	2	605.300581	1208.58661	0.4036	0.0002443	0.66727	0.0004039	1.0709	0.0006482	605.3006561283189	68.548	0.52477	68.529	68.37	68.895	-0.01915					26	18	2	0	0	0	0.19686	1	17278	17278		31.268	20.444	1	232530			60870	8215	34971	34972	74235	74235					-0.00933987868256736
YYGNTLVEF	9	Unmodified	_YYGNTLVEF_					0	0	0		nc|ENSG00000162745|Q68BL8-2|OLFML2B;ENSG00000162745|ENST00000294794|OLFML2B	nc|ENSG00000162745|Q68BL8-2|OLFML2B	nc|ENSG00000162745|Q68BL8-2|OLFML2B	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.2637329101562	2	553.263665	1104.51278	0.33682	0.00018635	0.13996	7.7435E-05	0.47678	0.00026378	553.2635841561388	70.082	0.48088	70.082	69.869	70.35	0					43	17	3	0	0	0	0.016005	1	17786	17786		85.642	14.508	1	530100			60871	5610	34972	34973	74236	74236					-0.03529956030570247
YYGNTLVEF	9	Unmodified	_YYGNTLVEF_					0	0	0		nc|ENSG00000162745|Q68BL8-2|OLFML2B;ENSG00000162745|ENST00000294794|OLFML2B	nc|ENSG00000162745|Q68BL8-2|OLFML2B	nc|ENSG00000162745|Q68BL8-2|OLFML2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	553.263665	1104.51278	0.33075	0.00018299	0.10687	5.9127E-05	0.43762	0.00024212	553.2637090269898	70.053	0.52837	70.119	69.856	70.384	0.066048	0.010074	-4.1358E-05	NaN	85.642	47	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472300			60872	5610	34972	34973							-0.03529956030570247
YYGNTLVEF	9	Unmodified	_YYGNTLVEF_					0	0	0		nc|ENSG00000162745|Q68BL8-2|OLFML2B;ENSG00000162745|ENST00000294794|OLFML2B	nc|ENSG00000162745|Q68BL8-2|OLFML2B	nc|ENSG00000162745|Q68BL8-2|OLFML2B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	553.263665	1104.51278	0.32803	0.00018149	0.1996	0.00011043	0.52763	0.00029192	553.2637007862425	70.147	0.54896	70.125	69.832	70.381	-0.022087	0.016505	6.1252E-05	NaN	85.642	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	580620			60873	5610	34972	34973							-0.03529956030570247
YYGPLNLLTF	10	Unmodified	_YYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.8189697265625	2	600.818607	1199.62266	0.33512	0.00020134	0.063888	3.8385E-05	0.399	0.00023973	600.8186505702462	97.537	0.97134	97.6	97.054	98.026	0.062843					272	107	4	0	0	0	3.0587E-06	3	26099	26066;26099;26132		155.03	115.08	1	581280			60874	4544	34973	34974	74237;74238;74239	74238					0.03083469308603526
YYGPLNLLTF	10	Unmodified	_YYGPLNLLTF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8189697265625	2	600.818607	1199.62266	0.36782	0.00022099	0.43738	0.00026279	0.8052	0.00048378	600.8186180259256	97.666	0.74184	97.659	97.273	98.015	-0.0068283					199	80	3	0	0	0	3.0587E-06	3	26140	26106;26140;26176		155.03	115.08	1	586990			60875	4544	34973	34974	74240;74241;74242	74241					0.03083469308603526
YYGQGFPSF	9	Unmodified	_YYGQGFPSF_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2	ENSG00000147459|ENST00000276440|DOCK5;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	533.237548828125	2	533.23745	1064.46035	0.32693	0.00017433	0.40213	0.00021443	0.72906	0.00038876	533.2375146338853	69.592	0.79037	69.592	69.313	70.103	0					83	28	4	0	0	0	0.0033114	1	17577	17577		99.799	99.799	1	858550			60876	3792;4767	34974	34975	74243	74243					-0.06930494373523288
YYGQGFPSF	9	Unmodified	_YYGQGFPSF_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2	ENSG00000147459|ENST00000276440|DOCK5;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	533.7393798828125	2	533.23745	1064.46035	0.20857	0.00011122	0.55061	0.00029361	0.75918	0.00040483	533.2376338442089	69.535	0.84688	69.601	69.34	70.187	0.066048					73	29	4	0	0	0	0.012929	1	17556	17556		74.929	74.929	1	846830			60877	3792;4767	34974	34975	74244	74244					-0.06930494373523288
YYGQGFPSF	9	Unmodified	_YYGQGFPSF_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2	ENSG00000147459|ENST00000276440|DOCK5;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENST00000523351.5_1_5:169188379-169509859:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	533.2377319335938	2	533.23745	1064.46035	0.38217	0.00020379	0.37053	0.00019758	0.7527	0.00040137	533.2375324850793	69.664	0.95509	69.642	69.293	70.248	-0.022087					88	34	4	0	0	0	0.0016361	1	17578	17578		114.65	114.65	1	978320			60878	3792;4767	34974	34975	74245	74245					-0.06930494373523288
YYGQGFPTF	9	Unmodified	_YYGQGFPTF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	540.2459106445312	2	540.245275	1078.476	0.4976	0.00026883	0.51338	0.00027735	1.011	0.00054618	540.2453264705867	70.646	0.49673	70.646	70.406	70.902	0					37	17	3	0	0	0	0.051692	1	17929	17929		52.268	29.12	1	422030			60879	4924	34975	34976	74246	74246					-0.0601020785647961
YYGQGFPTF	9	Unmodified	_YYGQGFPTF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	540.2453002929688	2	540.245275	1078.476	0.48706	0.00026313	0.41682	0.00022519	0.90388	0.00048832	540.2450005640092	70.658	0.57584	70.719	70.493	71.069	0.060783					39	20	3	0	0	0	0.07432	1	17923	17923		43.858	19.838	1	378050			60880	4924	34975	34976	74247	74247					-0.0601020785647961
YYGQGFPTF	9	Unmodified	_YYGQGFPTF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	540.2454223632812	2	540.245275	1078.476	0.61902	0.00033442	0.26013	0.00014053	0.87915	0.00047496	540.245059909787	70.7	0.53407	70.675	70.437	70.971	-0.024864					40	18	3	0	0	0	0.019245	1	17933	17933		65.235	29.191	1	374440			60881	4924	34975	34976	74248	74248					-0.0601020785647961
YYHARVYEF	9	Unmodified	_YYHARVYEF_					0	0	0		ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3	ENST00000580980.1_1_17:38142938-38146259:+|nuORF	ENST00000580980.1_1_17:38142938-38146259:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	624.7982177734375	2	624.29583	1246.57711	0.19504	0.00012176	0.70442	0.00043977	0.89946	0.00056153	624.2962323564761	41.463	0.37811	41.463	41.125	41.504	0					21	13	2	0	0	0	0.048871	1	8921	8921		66.457	57.074	1	637410			60882	2176	34976	34977	74249	74249					-0.03631756153754395
YYHARVYEF	9	Unmodified	_YYHARVYEF_					0	0	0		ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3	ENST00000580980.1_1_17:38142938-38146259:+|nuORF	ENST00000580980.1_1_17:38142938-38146259:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.5325012207031	3	416.532979	1246.57711	0.24157	0.00010062	-0.97979	-0.00040812	-0.73822	-0.00030749	416.53222410991873	40.983	0.79135	41.074	40.691	41.482	0.090252					89	29	4	0	0	0	0.31164	1	8778	8778		7.1017	2.0542	1	1709800			60883	2176	34976	34977	74250	74250					-0.03631756153754395
YYHARVYEF	9	Unmodified	_YYHARVYEF_					0	0	0		ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3	ENST00000580980.1_1_17:38142938-38146259:+|nuORF	ENST00000580980.1_1_17:38142938-38146259:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	624.2957153320312	2	624.29583	1246.57711	0.065321	4.0779E-05	0.69577	0.00043437	0.7611	0.00047515	624.2963017943974	40.922	0.58046	41.015	40.824	41.405	0.09267					45	21	3	0	0	0	0.016571	1	8795	8795		85.642	72.599	1	472720			60884	2176	34976	34977	74251	74251					-0.03631756153754395
YYHARVYEF	9	Unmodified	_YYHARVYEF_					0	0	0		ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3	ENST00000580980.1_1_17:38142938-38146259:+|nuORF	ENST00000580980.1_1_17:38142938-38146259:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	624.79736328125	2	624.29583	1246.57711	-0.013769	-8.596E-06	1.067	0.00066609	1.0532	0.0006575	624.2965004026865	40.902	0.64988	40.999	40.748	41.398	0.097164					53	23	3	0	0	0	0.048871	1	8742	8742		66.457	48.31	1	457550			60885	2176	34976	34977	74252	74252					-0.03631756153754395
YYHARVYEF	9	Unmodified	_YYHARVYEF_					0	0	0		ENST00000580980.1_1_17:38142938-38146259:+|nuORF;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3	ENST00000580980.1_1_17:38142938-38146259:+|nuORF	ENST00000580980.1_1_17:38142938-38146259:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	416.53253173828125	3	416.532979	1246.57711	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.945	1	41.042	40.542	41.542	0.096626								0	0	0	0.2225	1	8772	8772		15.248	7.6395	1				60886	2176	34976	34977	74253	74253					-0.03631756153754395
YYHFELLL	8	Unmodified	_YYHFELLL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7772216796875	2	549.286943	1096.55933	0.61717	0.000339	-2.0093	-0.0011037	-1.3921	-0.00076466	549.2857256303055	74.628	0.45578	74.597	74.271	74.726	-0.030655					22	15	2	0	0	0	0.33916	1	19096	19096		26.341	1.6674	1	353040	+		60887	13586	34977	34978	74254	74254					0.014915285913957632
YYHFELLL	8	Unmodified	_YYHFELLL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	549.7772216796875	2	549.286943	1096.55933	0.61717	0.000339	-2.0093	-0.0011037	-1.3921	-0.00076466	549.2857256303055	74.628	0.45578	74.597	74.271	74.726	-0.030655					22	15	2	0	0	0	0.31375	1	19096	19096		26.341	1.6674	1	353040	+		60888	13586	34977	34978	74255	74255					0.014915285913957632
YYHLDFHGEA	10	Unmodified	_YYHLDFHGEA_					0	0	0			REV__ENSG00000127083|ENST00000375550|OMD	REV__ENSG00000127083|ENST00000375550|OMD	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	626.2744750976562	2	626.275095	1250.53564	0.32189	0.00020159	-1.3779	-0.00086295	-1.056	-0.00066136	626.2739599475036	57.032	0.47732	57.013	56.78	57.257	-0.019081					41	16	3	0	0	0	0.39745	2	13736	13736;13790		3.9444	1.2092	1	677310	+		60889	15329	34978	34979	74256;74257	74256					-0.0796093691308215
YYHLDFHGEA	10	Unmodified	_YYHLDFHGEA_					0	0	0			REV__ENSG00000127083|ENST00000375550|OMD	REV__ENSG00000127083|ENST00000375550|OMD	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	626.275095	1250.53564	0.039793	2.4921E-05	-1.0094	-0.00063218	-0.96963	-0.00060726	626.2744310284451	56.937	0.63494	57.016	56.73	57.365	0.078671	-0.0051114	0.00029253	NaN	3.9444	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	650530	+		60890	15329	34978	34979							-0.0796093691308215
YYHLDFHGEA	10	Unmodified	_YYHLDFHGEA_					0	0	0			REV__ENSG00000127083|ENST00000375550|OMD	REV__ENSG00000127083|ENST00000375550|OMD	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	626.275095	1250.53564	0.32189	0.00020159	-1.3779	-0.00086295	-1.056	-0.00066136	626.2739599475036	57.032	0.47732	57.013	56.78	57.257	-0.019081	-0.007515	-0.00016902	NaN	3.9444	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	677310	+		60891	15329	34978	34979							-0.0796093691308215
YYHMWVFL	8	Unmodified	_YYHMWVFL_					0	0	0			REV__ENST00000526139.1_1_11:88911121-88933495:+|nuORF	REV__ENST00000526139.1_1_11:88911121-88933495:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3347778320312	2	579.775688	1157.53682	0.17577	0.00010191	-0.077962	-4.52E-05	0.097813	5.6709E-05	579.7757165256633	59.294	0.34632	59.294	59.133	59.479	0					15	11	2	0	0	0	0.34147	1	14451	14451		11.114	0.29054	1	123960	+		60892	13844	34979	34980	74258	74258					-0.03564394077898214
YYIDCDVSLL	10	Unmodified	_YYIDCDVSLL_					0	0	0		ENST00000351698.4_1_9:132575664-132575895:-|nuORF	ENST00000351698.4_1_9:132575664-132575895:-|nuORF	ENST00000351698.4_1_9:132575664-132575895:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	602.8154907226562	2	602.28374	1202.55293	0.45292	0.00027278	0.57238	0.00034474	1.0253	0.00061752	602.7866360390715	72.271	0.55485	72.244	71.873	72.428	-0.027275					33	19	3	0	0	0	0.30079	1	18415	18415		20.454	9.6297	1	141290			60893	9578	34980	34981	74259	74259					-0.04024777422296211
YYIDKLEYL	9	Unmodified	_YYIDKLEYL_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	610.31591796875	2	610.315897	1218.61724	0.38451	0.00023467	-0.012443	-7.5944E-06	0.37206	0.00022708	610.315813097481	64.809	0.91959	64.809	64.539	65.458	0					84	33	4	0	0	0	0.0022427	2	16147	16100;16147		117.76	72.061	1	1587400			60894	6755	34981	34982	74260;74261	74261					0.016677457261494055
YYIDKLEYL	9	Unmodified	_YYIDKLEYL_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.3160400390625	2	610.315897	1218.61724	0.45019	0.00027476	-0.047334	-2.8889E-05	0.40286	0.00024587	610.3157785660256	64.729	0.77261	64.822	64.554	65.327	0.09288					80	28	4	0	0	0	0.0090407	2	16116	16067;16116		96.936	65.667	1	1713600			60895	6755	34981	34982	74262;74263	74263					0.016677457261494055
YYIDKLEYL	9	Unmodified	_YYIDKLEYL_					0	0	0		nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	nc|ENSG00000173848|Q7Z628-2|NET1	nc|ENSG00000173848|Q7Z628-2|NET1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.3160400390625	2	610.315897	1218.61724	0.23437	0.00014304	0.1699	0.00010369	0.40427	0.00024673	610.3159615360113	64.817	0.81958	64.808	64.58	65.4	-0.0095291					77	29	4	0	0	0	0.0022427	2	16150	16099;16150		128.93	90.132	1	1939900			60896	6755	34981	34982	74264;74265	74265					0.016677457261494055
YYIDRINSM	9	Oxidation (M)	_YYIDRINSM(Oxidation (M))_		YYIDRINSM(1)		YYIDRINSM(87)	0	0	1		nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.7789306640625	2	595.779156	1189.54376	0.44958	0.00026785	-0.02646	-1.5764E-05	0.42312	0.00025208	595.7792815153945	39.521	0.47128	39.614	39.416	39.887	0.09267					28	16	2	0	0	0	0.0048951	1	8372	8372		87.258	63.468	1	274190			60897	4693	34982	34983	74266	74266		589			-0.043431259879980644
YYIDRINSM	9	Oxidation (M)	_YYIDRINSM(Oxidation (M))_					0	0	1		nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	nc|ENSG00000146122|Q86T65-4|DAAM2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	595.779156	1189.54376	0.3989	0.00023765	-0.070305	-4.1886E-05	0.32859	0.00019577	595.7791722654414	39.467	0.49772	39.567	39.424	39.922	0.099407	-0.023549	-1.1214E-05	NaN	87.258	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325770			60898	4693	34982	34983				589			-0.043431259879980644
YYIFFLFF	8	Unmodified	_YYIFFLFF_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENSG00000177054|ENST00000446113|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3117065429688	2	580.296779	1158.57901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.887	1	62.983	62.483	63.483	0.095722								0	0	0	0.27695	1	15535	15535		32.454	0	1				60899	6958	34983	34984	74267	74267					0.006059046021391623
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3191528320312	2	589.318243	1176.62193	0.47276	0.00027861	-0.14936	-8.8023E-05	0.3234	0.00019059	589.3185790622389	72.787	1.8169	72.787	72.374	74.191	0					288	64	7	0	0	0	2.8439E-05	7	18558	18511;18558;18606;18649;18847;18901;18989		152.41	104.21	1	25908000			60900	8364	34984	34985	74268;74269;74270;74271;74272;74273;74274	74269					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.7644653320312	2	589.318243	1176.62193	0.38438	0.00022652	1.1297	0.00066576	1.5141	0.00089228	589.3190095927273	76.496	0.98438	76.496	76.22	77.204	0					56	35	2	0	0	0	0.16284	1	19883	19883		37.974	18.535	1	119910			60901	8364	34984	34985	74275	74275					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3192138671875	2	589.318243	1176.62193	0.38757	0.0002284	-0.10999	-6.4822E-05	0.27757	0.00016358	589.3187083804323	72.724	1.6832	72.778	72.408	74.091	0.053833					278	60	7	0	0	0	2.8439E-05	5	18538	18491;18538;18577;18620;18824		152.41	112.17	1	28700000			60902	8364	34984	34985	74276;74277;74278;74279;74280	74277					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3169555664062	2	589.318243	1176.62193	0.29043	0.00017115	-1.7806	-0.0010493	-1.4902	-0.00087819	589.3170178799963	74.129	0.52248	74.182	74.031	74.554	0.052361					26	17	2	0	0	0	0.12642	1	19060	19060		34.402	19.153	1	400080			60903	8364	34984	34985	74281	74281					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.7649536132812	2	589.318243	1176.62193	0.20827	0.00012274	0.62563	0.00036869	0.8339	0.00049143	589.3188214342762	76.451	0.73787	76.505	76.32	77.058	0.053413					38	26	3	0	0	0	0.21389	1	19751	19751		25.399	3.6527	1	180730			60904	8364	34984	34985	74282	74282					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.764404296875	2	589.318243	1176.62193	0.6267	0.00036933	0.26187	0.00015433	0.88857	0.00052365	589.3183249036234	77.124	1.1018	77.179	77.09	78.191	0.05542					57	39	2	0	0	0	0.1939	1	19926	19926		30.637	18.105	1	123150			60905	8364	34984	34985	74283	74283					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.7644653320312	2	589.318243	1176.62193	0.24096	0.000142	0.42977	0.00025327	0.67073	0.00039528	589.3187886852879	76.02	0.27314	76.073	75.916	76.189	0.053413					16	9	3	0	0	0	0.22674	1	19533	19533		22.736	6.8891	1	240820			60906	8364	34984	34985	74284	74284					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3192749023438	2	589.318243	1176.62193	0.50836	0.00029958	-0.25701	-0.00015146	0.25135	0.00014813	589.3186829539426	72.83	1.8415	72.801	72.455	74.296	-0.029305					278	66	7	0	0	0	3.5085E-07	7	18556	18556;18597;18650;18692;18893;18934;19004		166.45	116.51	1	36752000			60907	8364	34984	34985	74285;74286;74287;74288;74289;74290;74291	74285					0.04068674659561111
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	ENST00000541537.5_1_12:12966301-12977638:+|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.3172607421875	2	589.318243	1176.62193	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.481	1	74.451	73.951	74.951	-0.030655								0	0	0	0.18053	1	19074	19074		27.629	9.4825	1				60908	8364	34984	34985	74292	74292					0.04068674659561111
YYIGSSIDAPL	11	Unmodified	_YYIGSSIDAPL_					0	0	0			REV__ENST00000424746.1_1_22:41184916-41185198:-|nuORF	REV__ENST00000424746.1_1_22:41184916-41185198:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.27685546875	2	599.803154	1197.59175	0.55046	0.00033017	-3.969	-0.0023806	-3.4185	-0.0020505	600.3022817758125	75.165	0.13586	75.217	75.159	75.295	0.052361					5	4	2	0	0	0	0.33085	1	19308	19308		6.2058	1.4498	1	30151	+		60909	20892	34985	34986	74293	74293					0.0008627120371329511
YYILRPEVI	9	Unmodified	_YYILRPEVI_					0	0	0		ENSG00000198162|ENST00000356554|MAN1A2	ENSG00000198162|ENST00000356554|MAN1A2	ENSG00000198162|ENST00000356554|MAN1A2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	583.272705078125	2	583.334424	1164.6543	0.44808	0.00026138	-0.47007	-0.00027421	-0.02199	-1.2828E-05	583.3344505096503	63.456	0.50452	63.447	63.242	63.746	-0.0085526					21	17	2	0	0	0	0.17696	1	15723	15723		29.841	7.1043	1	236470			60910	8043	34986	34987	74294	74294					0.0785546206257095
YYINKISSTL	10	Unmodified	_YYINKISSTL_					0	0	0		ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000463527.5_1_1:155141918-155144917:-|nuORF;ENST00000471891.5_1_1:155141918-155145146:-|nuORF;ENST00000497317.5_1_1:155141918-155145314:-|nuORF;ENST00000482246.5_1_1:155141918-155145739:-|nuORF;ENSG00000163463|ENST00000295682|KRTCAP2;nc|ENSG00000163463|Q8N6L1-2|KRTCAP2	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	600.8111572265625	2	601.326796	1200.63904	0.42822	0.0002575	2.3523	0.0014145	2.7805	0.001672	601.326889554335	52.063	0.46381	52.063	51.86	52.324	0					38	16	3	0	0	0	0.27086	1	12217	12217		32.037	11.584	1	268340			60911	5681	34987	34988	74295	74295					0.04674550474737771
YYINKISSTL	10	Unmodified	_YYINKISSTL_					0	0	0		ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000463527.5_1_1:155141918-155144917:-|nuORF;ENST00000471891.5_1_1:155141918-155145146:-|nuORF;ENST00000497317.5_1_1:155141918-155145314:-|nuORF;ENST00000482246.5_1_1:155141918-155145739:-|nuORF;ENSG00000163463|ENST00000295682|KRTCAP2;nc|ENSG00000163463|Q8N6L1-2|KRTCAP2	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	600.8113403320312	2	601.326796	1200.63904	0.53528	0.00032188	3.6502	0.002195	4.1855	0.0025169	601.3266809563738	52.002	0.40836	52.052	51.874	52.282	0.050571					38	14	4	0	0	0	0.28645	1	12148	12148		27.223	3.2027	1	303550			60912	5681	34987	34988	74296	74296					0.04674550474737771
YYINKISSTL	10	Unmodified	_YYINKISSTL_					0	0	0		ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000463527.5_1_1:155141918-155144917:-|nuORF;ENST00000471891.5_1_1:155141918-155145146:-|nuORF;ENST00000497317.5_1_1:155141918-155145314:-|nuORF;ENST00000482246.5_1_1:155141918-155145739:-|nuORF;ENSG00000163463|ENST00000295682|KRTCAP2;nc|ENSG00000163463|Q8N6L1-2|KRTCAP2	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	600.8111572265625	2	601.326796	1200.63904	0.18023	0.00010838	0.33201	0.00019964	0.51224	0.00030802	601.3269148698467	52.213	0.53794	52.212	51.902	52.44	-0.00080872					30	19	2	0	0	0	0.31237	1	12203	12203		16.149	5.3252	1	292190			60913	5681	34987	34988	74297	74297					0.04674550474737771
YYINKWRH	8	Unmodified	_YYINKWRH_					0	0	0			REV__ITGA9|p.H902Lfs*11|1|0.44|ENSG00000144668|chr3:37779939-37779951|ACTGTAACTTTAG/-|frameshift_variant	REV__ITGA9|p.H902Lfs*11|1|0.44|ENSG00000144668|chr3:37779939-37779951|ACTGTAACTTTAG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.8446655273438	2	590.306532	1178.59851	0.37129	0.00021918	-1.095	-0.00064636	-0.72366	-0.00042718	590.3059728018994	80.829	0.35886	80.829	80.657	81.016	0					24	18	2	0	0	0	0.34297	1	20984	20984		6.3541	2.7576	1	109950	+		60914	16251	34988	34989	74298	74298					0.016356736656007342
YYINKWRH	8	Unmodified	_YYINKWRH_					0	0	0			REV__ITGA9|p.H902Lfs*11|1|0.44|ENSG00000144668|chr3:37779939-37779951|ACTGTAACTTTAG/-|frameshift_variant	REV__ITGA9|p.H902Lfs*11|1|0.44|ENSG00000144668|chr3:37779939-37779951|ACTGTAACTTTAG/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.763671875	2	590.306532	1178.59851	0.1715	0.00010124	-1.1416	-0.00067391	-0.97013	-0.00057267	590.3059773143941	80.807	0.37311	80.872	80.701	81.074	0.065094					19	15	2	0	0	0	0.34319	1	21033	21033		5.7604	0.86342	1	161230	+		60915	16251	34988	34989	74299	74299					0.016356736656007342
YYINKWRH	8	Unmodified	_YYINKWRH_					0	0	0			REV__ITGA9|p.H902Lfs*11|1|0.44|ENSG00000144668|chr3:37779939-37779951|ACTGTAACTTTAG/-|frameshift_variant	REV__ITGA9|p.H902Lfs*11|1|0.44|ENSG00000144668|chr3:37779939-37779951|ACTGTAACTTTAG/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	590.306532	1178.59851	0.38148	0.00022519	-0.75164	-0.0004437	-0.37016	-0.00021851	590.3063197672133	80.889	0.28531	80.862	80.731	81.017	-0.026825	0.007523	0.0003671	NaN	6.3541	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172830	+		60916	16251	34988	34989							0.016356736656007342
YYIPNNRISP	10	Unmodified	_YYIPNNRISP_					0	0	0			REV__ENST00000509155.1_3_4:12642019-12642223:-|nuORF	REV__ENST00000509155.1_3_4:12642019-12642223:-|nuORF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.8234252929688	2	618.822212	1235.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.345	1	73.345	72.845	73.845	0								0	0	0	0.37664	1	18741	18741		3.5965	0.31518	1		+		60917	21785	34989	34990	74300	74300					0.021482019090399262
YYIQNGIQSF	10	Unmodified	_YYIQNGIQSF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	616.8012084960938	2	616.800946	1231.58734	0.41543	0.00025624	0.41187	0.00025404	0.8273	0.00051028	616.8011122748427	64.543	0.8026	64.543	64.158	64.96	0					64	29	4	0	0	0	1.3455E-13	1	16042	16042		187.3	133.46	1	823800			60918	8602	34990	34991	74301	74301					-0.01919193219191584
YYIQNGIQSF	10	Unmodified	_YYIQNGIQSF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	616.8012084960938	2	616.800946	1231.58734	0.32515	0.00020055	0.40128	0.00024751	0.72643	0.00044806	616.8010016726582	64.463	0.6798	64.556	64.2	64.88	0.09288					54	24	3	0	0	0	1.1415E-13	1	16042	16042		189.73	135.9	1	848690			60919	8602	34990	34991	74302	74302					-0.01919193219191584
YYIQNGIQSF	10	Unmodified	_YYIQNGIQSF_					0	0	0		ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	ENSG00000253729|ENST00000314191|PRKDC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	616.8012084960938	2	616.800946	1231.58734	0.38106	0.00023504	0.39962	0.00024648	0.78068	0.00048153	616.8011447123653	64.546	0.68464	64.537	64.177	64.862	-0.0095291					55	24	3	0	0	0	5.2621E-09	1	16079	16079		173.69	127.99	1	794940			60920	8602	34990	34991	74303	74303					-0.01919193219191584
YYISPLVGVF	10	Unmodified	_YYISPLVGVF_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.3158569335938	2	579.3157	1156.61685	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.41	1	91.41	90.91	91.91	0.00046539								0	0	0	0.27706	1	24262	24262		30.637	19.837	1				60921	3939	34991	34992	74304	74304					0.04480370796954958
YYISPRLTF	9	Unmodified	_YYISPRLTF_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	580.3113403320312	2	580.310949	1158.60735	0.42071	0.00024414	0.15707	9.115E-05	0.57778	0.00033529	580.311006846988	63.733	1.2317	63.733	63.389	64.621	0					124	44	5	0	0	0	0.0032746	3	15797	15750;15797;15880		100.09	0	1	5401900			60922	5204	34992	34993	74305;74306;74307	74306					0.034386025114145014
YYISPRLTF	9	Unmodified	_YYISPRLTF_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3114013671875	2	580.310949	1158.60735	0.43707	0.00025364	0.067133	3.8958E-05	0.5042	0.0002926	580.3109792975498	63.573	1.3265	63.668	63.365	64.691	0.095722					132	47	5	0	0	0	0.0041491	3	15746	15698;15746;15790		93.166	0	1	5330300			60923	5204	34992	34993	74308;74309;74310	74309					0.034386025114145014
YYISPRLTF	9	Unmodified	_YYISPRLTF_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	580.3117065429688	2	580.310949	1158.60735	0.36502	0.00021182	0.95184	0.00055236	1.3169	0.00076419	580.3115147947343	62.858	0.64855	62.953	62.634	63.282	0.095722					42	20	3	0	0	0	0.20381	1	15535	15535		29.841	0	1	507710			60924	5204	34992	34993	74311	74311					0.034386025114145014
YYISPRLTF	9	Unmodified	_YYISPRLTF_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.311279296875	2	580.310949	1158.60735	0.48244	0.00027996	0.0031856	1.8486E-06	0.48562	0.00028181	580.3109094094356	63.727	1.4568	63.718	63.379	64.836	-0.0085564					122	52	5	0	0	0	0.0032746	2	15787	15742;15787		100.09	0	1	5797800			60925	5204	34992	34993	74312;74313	74313					0.034386025114145014
YYISPRLTF	9	Unmodified	_YYISPRLTF_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	580.3114013671875	2	580.310949	1158.60735	0.23985	0.00013919	0.5857	0.00033989	0.82555	0.00047908	580.3113423862684	62.94	0.62206	62.931	62.646	63.268	-0.0085526					47	19	4	0	0	0	0.089483	1	15569	15569		59.368	0	1	647010			60926	5204	34992	34993	74314	74314					0.034386025114145014
YYISPRLTF	9	Unmodified	_YYISPRLTF_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	580.310949	1158.60735	0.27998	0.00016247	0.99307	0.00057629	1.273	0.00073876	580.3114587737407	62.965	0.50668	62.965	62.718	63.225	0	0.014946	0.00015605	NaN	59.368	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	490120			60927	5204	34992	34993							0.034386025114145014
YYITGNLETF	10	Unmodified	_YYITGNLETF_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.2967529296875	2	610.795329	1219.5761	0.41538	0.00025371	-0.22684	-0.00013855	0.18854	0.00011516	610.7952744106966	72.471	1.7607	72.471	72.132	73.893	0					220	63	6	0	0	0	1.2549E-13	7	18417	18417;18458;18507;18550;18601;18654;18731		233.47	177.3	1	13932000			60928	1403	34993	34994	74315;74316;74317;74318;74319;74320;74321	74315					-0.024900153133330605
YYITGNLETF	10	Unmodified	_YYITGNLETF_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	610.7955322265625	2	610.795329	1219.5761	0.48402	0.00029564	-0.32555	-0.00019884	0.15847	9.6793E-05	610.7952276916022	72.415	1.81	72.472	72.144	73.954	0.056572					224	65	5	0	0	0	1.2549E-13	7	18389	18389;18437;18487;18540;18588;18641;18692		233.47	179.64	1	13359000			60929	1403	34993	34994	74322;74323;74324;74325;74326;74327;74328	74322					-0.024900153133330605
YYITGNLETF	10	Unmodified	_YYITGNLETF_					0	0	0		ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	ENSG00000091490|ENST00000399878|SEL1L3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	610.7953491210938	2	610.795329	1219.5761	0.39177	0.00023929	-0.2065	-0.00012613	0.18527	0.00011316	610.7952997713251	72.511	1.7986	72.481	72.141	73.939	-0.029305					216	64	6	0	0	0	1.2549E-13	9	18419	18419;18462;18505;18547;18589;18632;18677;18737;18800		233.47	177.3	1	15271000			60930	1403	34993	34994	74329;74330;74331;74332;74333;74334;74335;74336;74337	74329					-0.024900153133330605
YYITTRAQF	9	Unmodified	_YYITTRAQF_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	581.7755126953125	2	581.798206	1161.58186	0.50457	0.00029356	-1.3626	-0.00079278	-0.85806	-0.00049922	581.7975063958243	48.314	0.45996	48.314	48.044	48.504	0					41	15	3	0	0	0	0.0090577	1	11050	11050		89.401	51.25	1	1778900			60931	428	34994	34995	74338	74338					0.007531279889917641
YYITTRAQF	9	Unmodified	_YYITTRAQF_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	581.7754516601562	2	581.798206	1161.58186	0.67774	0.00039431	-1.6942	-0.00098567	-1.0164	-0.00059137	581.7971747064973	48.286	0.49803	48.334	48.075	48.573	0.04752					55	18	4	0	0	0	0.0063009	1	11068	11068		99.755	61.604	1	1499200			60932	428	34994	34995	74339	74339					0.007531279889917641
YYITTRAQF	9	Unmodified	_YYITTRAQF_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	582.2772827148438	2	581.798206	1161.58186	0.54814	0.00031891	-1.3267	-0.00077185	-0.77853	-0.00045295	581.7972811381737	48.179	0.60641	48.222	47.926	48.533	0.04332					56	22	4	0	0	0	0.075356	1	10993	10993		63.961	33.736	1	1776300			60933	428	34994	34995	74340	74340					0.007531279889917641
YYITTRVQF	9	Unmodified	_YYITTRVQF_					0	0	0		ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	595.8142700195312	2	595.813856	1189.61316	0.57037	0.00033984	0.10962	6.5312E-05	0.67999	0.00040515	595.8139468307837	56.862	0.89116	56.862	56.633	57.525	0					95	32	4	0	0	0	0.00045155	2	13717	13666;13717		129.77	79.839	1	2578400			60934	285	34995	34996	74341;74342	74342					0.025937010230791202
YYITTRVQF	9	Unmodified	_YYITTRVQF_					0	0	0		ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.8142700195312	2	595.813856	1189.61316	0.60712	0.00036173	0.19047	0.00011348	0.79759	0.00047521	595.8139323613872	56.76	0.85358	56.839	56.543	57.397	0.078674					88	31	4	0	0	0	4.3881E-05	2	13659	13606;13659		149.91	88.556	1	2667100			60935	285	34995	34996	74343;74344	74344					0.025937010230791202
YYITTRVQF	9	Unmodified	_YYITTRVQF_					0	0	0		ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	595.814453125	2	595.813856	1189.61316	0.53496	0.00031874	0.32175	0.00019171	0.85671	0.00051044	595.8140482000731	57.043	0.82371	57.024	56.729	57.553	-0.019077					75	29	4	0	0	0	0.00010125	2	13706	13706;13755		140.63	83.751	1	2967900			60936	285	34995	34996	74345;74346	74345					0.025937010230791202
YYKFRLLLQED	11	Unmodified	_YYKFRLLLQED_					0	0	0			REV__nc|ENSG00000101311|Q9BQL6-4|FERMT1	REV__nc|ENSG00000101311|Q9BQL6-4|FERMT1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	496.3131103515625	3	496.601282	1486.78202	0.52537	0.0002609	0.58943	0.00029271	1.1148	0.00055361	496.60159766205163	49.418	0.84546	49.418	49.077	49.923	0					53	30	2	0	0	0	0.33296	1	11416	11416		2.6312	0.88896	1	566550	+		60937	14261	34996	34997	74347	74347					0.0580955786595041
YYKLEDMI	8	Unmodified	_YYKLEDMI_					0	0	0			REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	REV__LETM2|p.E302Dfs*16|1|0.07|ENSG00000165046|chr8:38400974-38400974|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.7598266601562	2	537.762443	1073.51033	0.45843	0.00024653	-1.4159	-0.00076142	-0.95747	-0.00051489	537.761244640302	82.575	0.71579	82.648	82.24	82.956	0.073097					42	15	3	0	0	0	0.33993	1	21635	21635		16.942	4.4107	1	595940	+		60938	17202	34997	34998	74348	74348					-0.02348127759887575
YYKLQVDF	8	Unmodified	_YYKLQVDF_					0	0	0		nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A	nc|ENSG00000111319|P37088-4|SCNN1A	nc|ENSG00000111319|P37088-4|SCNN1A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2955322265625	2	538.276575	1074.5386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.765	1	88.854	88.354	89.354	0.089195								0	0	0	0.35985	1	23454	23454		10.183	1.5901	1				60939	2361	34998	34999	74349	74349					0.004309382117071436
YYKRDRRQ	8	Unmodified	_YYKRDRRQ_					0	0	0		ENSG00000169992|ENST00000302926|NLGN2	ENSG00000169992|ENST00000302926|NLGN2	ENSG00000169992|ENST00000302926|NLGN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.3035888671875	2	592.817796	1183.62104	0.42134	0.00024978	-0.32653	-0.00019358	0.094807	5.6204E-05	592.8178143870289	41.031	0.34716	41.122	40.952	41.299	0.090252					23	12	3	0	0	0	0.34272	1	8772	8772		7.9102	1.7183	1	175250			60940	6412	34999	35000	74350	74350					0.03657273063231514
YYLDHSILL	9	Unmodified	_YYLDHSILL_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.80322265625	2	568.802957	1135.59136	0.40837	0.00023228	0.1547	8.7992E-05	0.56306	0.00032027	568.8030114098647	66.377	0.7266	66.377	66.068	66.794	0					70	25	3	0	0	0	0.0061338	2	16586	16586;16631		85.357	49.313	1	2644400			60941	3939	35000	35001	74351;74352	74351					0.028988962745415847
YYLDHSILL	9	Unmodified	_YYLDHSILL_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.8031005859375	2	568.802957	1135.59136	0.49365	0.00028079	0.018003	1.024E-05	0.51165	0.00029103	568.8028882024233	66.242	0.79915	66.325	65.996	66.795	0.083832					76	28	3	0	0	0	0.013258	2	16545	16545;16595		74.423	38.296	1	2742100			60942	3939	35000	35001	74353;74354	74353					0.028988962745415847
YYLDHSILL	9	Unmodified	_YYLDHSILL_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	568.8031005859375	2	568.802957	1135.59136	0.24501	0.00013937	0.34063	0.00019375	0.58564	0.00033311	568.8030360903803	66.361	0.80945	66.347	66.032	66.842	-0.013596					80	29	3	0	0	0	0.0014051	2	16573	16573;16620		117.6	81.555	1	2560400			60943	3939	35000	35001	74355;74356	74355					0.028988962745415847
YYLFDSLWE	9	Unmodified	_YYLFDSLWE_					0	0	0			REV__CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant	REV__CACNA1A|p.L1543Dfs*51|1|0.31|ENSG00000141837|chr19:13255223-13255224|GC/-|frameshift_variant	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.2850341796875	2	618.284597	1234.55464	0.091805	5.6762E-05	1.266	0.00078276	1.3578	0.00083952	618.2850419756514	57.671	0.98926	57.653	57.229	58.218	-0.0172					111	36	6	0	0	0	0.26879	1	13906	13906		13.508	1.8676	1	2034100	+		60944	13135	35001	35002	74357	74357					-0.05325400342053399
YYLGKILEM	9	Oxidation (M)	_YYLGKILEM(Oxidation (M))_		YYLGKILEM(1)		YYLGKILEM(50)	0	0	1		nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;ENSG00000151746|ENST00000652176|BICD1	nc|ENSG00000151746|Q96G01-4|BICD1	nc|ENSG00000151746|Q96G01-4|BICD1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.3191528320312	2	573.299193	1144.58383	0.56402	0.00032335	-0.54204	-0.00031075	0.021979	1.2601E-05	573.2988454415251	56.633	0.60661	56.712	56.462	57.068	0.078674					52	22	3	0	0	0	0.058995	1	13615	13615		49.554	33.707	1	680470			60945	4982	35002	35003	74358	74358		615			0.017324206825833244
YYLGKILEM	9	Oxidation (M)	_YYLGKILEM(Oxidation (M))_		YYLGKILEM(1)		YYLGKILEM(50)	0	0	1		nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;ENSG00000151746|ENST00000652176|BICD1	nc|ENSG00000151746|Q96G01-4|BICD1	nc|ENSG00000151746|Q96G01-4|BICD1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.319091796875	2	573.299193	1144.58383	0.6005	0.00034426	-0.41627	-0.00023865	0.18423	0.00010562	573.2988356560124	56.836	0.60746	56.817	56.619	57.227	-0.019081					38	21	2	0	0	0	0.067563	1	13707	13707		49.554	37.914	1	630320			60946	4982	35002	35003	74359	74359		615			0.017324206825833244
YYLHVSTLF	9	Unmodified	_YYLHVSTLF_					0	0	0			REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7525634765625	2	571.797675	1141.5808	0.49575	0.00028347	0.013736	7.854E-06	0.50948	0.00029132	571.7976680126977	65.914	0.96482	65.914	65.608	66.573	0					67	34	3	0	0	0	0.21905	1	16406	16406		23.148	3.8914	1	724210	+		60947	14807	35003	35004	74360	74360					0.0156691362010406
YYLHVSTLF	9	Unmodified	_YYLHVSTLF_					0	0	0			REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.752685546875	2	571.797675	1141.5808	0.54481	0.00031152	0.26157	0.00014956	0.80638	0.00046108	571.7977159473252	65.745	0.81291	65.834	65.547	66.359	0.088882					59	29	3	0	0	0	0.1659	1	16377	16377		36.044	22.138	1	581830	+		60948	14807	35003	35004	74361	74361					0.0156691362010406
YYLHVSTLF	9	Unmodified	_YYLHVSTLF_					0	0	0			REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	REV__nc|ENSG00000113360|Q9NRR4-3|DROSHA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7526245117188	2	571.797675	1141.5808	0.38683	0.00022119	0.57087	0.00032642	0.9577	0.00054761	571.798079645935	65.898	0.76974	65.886	65.612	66.382	-0.011337					49	27	3	0	0	0	0.1659	1	16432	16432		36.044	12.024	1	623780	+		60949	14807	35003	35004	74362	74362					0.0156691362010406
YYLIFPEF	8	Unmodified	_YYLIFPEF_					0	0	0		ENST00000264645.11_1_17:38327543-38327843:+|nuORF	ENST00000264645.11_1_17:38327543-38327843:+|nuORF	ENST00000264645.11_1_17:38327543-38327843:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	546.2926635742188	2	546.276044	1090.53753	0.1757	9.598E-05	3.121	0.0017049	3.2967	0.0018009	546.2775385408451	61.641	0.78146	61.738	61.248	62.03	0.096985					38	28	2	0	0	0	0.32313	1	15184	15184		28.173	5.0248	1	261370			60950	9029	35004	35005	74363	74363					-0.0041127615718323796
YYLKALRSL	9	Unmodified	_YYLKALRSL_					0	0	0		ENST00000481600.5_1_10:127417653-127452038:+|nuORF;ENST00000419769.6_1_10:127430814-127452038:+|nuORF;ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1	ENST00000481600.5_1_10:127417653-127452038:+|nuORF	ENST00000481600.5_1_10:127417653-127452038:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	563.7926025390625	2	563.834591	1125.65463	0.76266	0.00043001	-0.79991	-0.00045102	-0.03725	-2.1003E-05	564.3356526201524	48.053	0.45047	48.1	47.994	48.444	0.047523					25	16	2	0	0	0	0.17696	1	11012	11012		36.506	21.925	1	411160			60951	11034	35005	35006	74364	74364					0.0968288178239618
YYLKQLQN	8	Unmodified	_YYLKQLQN_					0	0	0		nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1	nc|ENSG00000120868|O14727-5|APAF1	nc|ENSG00000120868|O14727-5|APAF1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.8110961914062	2	535.287474	1068.5604	0.69342	0.00037118	-1.8816	-0.0010072	-1.1882	-0.00063603	535.2864124039565	48.039	0.60103	48.083	47.987	48.588	0.04332					25	22	2	0	0	0	0.33245	1	11072	11072		19.439	9.3651	1	439910			60952	2970	35006	35007	74365	74365					0.028857429603021956
YYLLGWAPAF	10	Unmodified	_YYLLGWAPAF_					0	0	0		nc|ENSG00000004948|P30988-6|CALCR;nc|ENSG00000004948|P30988-5|CALCR	nc|ENSG00000004948|P30988-6|CALCR	nc|ENSG00000004948|P30988-6|CALCR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	602.313232421875	2	600.808042	1199.60153	0.53084	0.00031893	-2.4161	-0.0014516	-1.8853	-0.0011327	600.8059104074641	71.586	2.0277	71.643	71.04	73.068	0.056572					261	73	6	0	0	0	0.31876	2	18332	18332;18369		18.135	3.2967	1	4156400			60953	12556	35007	35008	74366;74367	74366					0.009715039997445274
YYLNDLDRI	9	Unmodified	_YYLNDLDRI_					0	0	0		nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000214415|ENST00000398291|GNAT3;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3	nc|ENSG00000127955|P63096-2|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	592.8013916015625	2	592.800946	1183.58734	0.19474	0.00011544	0.36825	0.0002183	0.56299	0.00033374	592.8010355177977	59.701	0.97449	59.701	59.412	60.387	0					68	34	4	0	0	0	3.707E-06	1	14537	14537		151.48	105.78	1	2444900			60954	805	35008	35009	74368	74368					0.0028880678080440703
YYLNDLDRI	9	Unmodified	_YYLNDLDRI_					0	0	0		nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000214415|ENST00000398291|GNAT3;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3	nc|ENSG00000127955|P63096-2|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	592.80126953125	2	592.800946	1183.58734	0.20993	0.00012445	0.30075	0.00017829	0.51068	0.00030273	592.8009590340586	59.535	0.77663	59.63	59.355	60.131	0.095093					79	27	4	0	0	0	4.216E-07	3	14482	14482;14530;14575		163.69	117.99	1	2247800			60955	805	35008	35009	74369;74370;74371	74369					0.0028880678080440703
YYLNDLDRI	9	Unmodified	_YYLNDLDRI_					0	0	0		nc|ENSG00000127955|P63096-2|GNAI1;ENSG00000214415|ENST00000398291|GNAT3;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3	nc|ENSG00000127955|P63096-2|GNAI1	nc|ENSG00000127955|P63096-2|GNAI1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	592.80126953125	2	592.800946	1183.58734	0.42951	0.00025462	-0.0465	-2.7565E-05	0.38301	0.00022705	592.8008388863815	59.706	0.84897	59.694	59.398	60.247	-0.011486					70	29	4	0	0	0	0.00010651	2	14518	14518;14617		139.78	88.152	1	2341300			60956	805	35008	35009	74372;74373	74372					0.0028880678080440703
YYLNDLERI	9	Unmodified	_YYLNDLERI_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;GNAZ|p.K278Tfs*32|1|0.07|ENSG00000128266|chr22:23123195-23123196|-/C|frameshift_variant;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000128266|ENST00000615612|GNAZ;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	599.808837890625	2	599.808771	1197.60299	0.55805	0.00033473	-0.12951	-7.7679E-05	0.42855	0.00025705	599.8086922522768	60.999	2.2409	60.999	60.664	62.905	0					186	83	4	0	0	0	4.1496E-11	5	14977	14925;14977;15028;15080;15125		189.73	127.16	1	18461000			60957	2559	35009	35010	74374;74375;74376;74377;74378	74375					0.01209093297848085
YYLNDLERI	9	Unmodified	_YYLNDLERI_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;GNAZ|p.K278Tfs*32|1|0.07|ENSG00000128266|chr22:23123195-23123196|-/C|frameshift_variant;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000128266|ENST00000615612|GNAZ;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	599.8092041015625	2	599.808771	1197.60299	0.52238	0.00031333	-0.02632	-1.5787E-05	0.49606	0.00029754	599.8087424292962	60.919	2.1004	61.016	60.726	62.826	0.096985					200	76	4	0	0	0	2.0102E-16	5	14953	14909;14953;15002;15058;15114		203.64	131.72	1	21441000			60958	2559	35009	35010	74379;74380;74381;74382;74383	74380					0.01209093297848085
YYLNDLERI	9	Unmodified	_YYLNDLERI_					0	0	0		nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;GNAZ|p.K278Tfs*32|1|0.07|ENSG00000128266|chr22:23123195-23123196|-/C|frameshift_variant;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000128266|ENST00000615612|GNAZ;ENSG00000114353|ENST00000313601|GNAI2;nc|ENSG00000114353|P04899-4|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	nc|ENSG00000114353|P04899-6|GNAI2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	599.8092651367188	2	599.808771	1197.60299	0.43723	0.00026225	0.034052	2.0425E-05	0.47128	0.00028268	599.8087844293839	60.999	2.3119	60.99	60.681	62.993	-0.0094566					197	85	4	0	0	0	4.1496E-11	6	14930	14930;14979;15023;15075;15132;15325		189.73	127.16	1	23307000			60959	2559	35009	35010	74384;74385;74386;74387;74388;74389	74384					0.01209093297848085
YYLNEIQSF	9	Unmodified	_YYLNEIQSF_					0	0	0		nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.7826538085938	2	588.782222	1175.54989	0.40401	0.00023787	0.079158	4.6607E-05	0.48317	0.00028448	588.7821990158632	71.064	1.3652	71.064	70.739	72.104	0					140	48	4	0	0	0	3.5809E-25	4	18044	17992;18044;18087;18139		249.11	163.47	1	8666400			60960	5455	35010	35011	74390;74391;74392;74393	74391					-0.030862844848115856
YYLNEIQSF	9	Unmodified	_YYLNEIQSF_					0	0	0		nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.782470703125	2	588.782222	1175.54989	0.33278	0.00019593	0.1245	7.3304E-05	0.45728	0.00026924	588.7821958716407	71.016	1.3479	71.077	70.772	72.12	0.060783					132	48	4	0	0	0	3.5809E-25	4	18027	17978;18027;18079;18132		249.11	160.21	1	9161800			60961	5455	35010	35011	74394;74395;74396;74397	74395					-0.030862844848115856
YYLNEIQSF	9	Unmodified	_YYLNEIQSF_					0	0	0		nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	nc|ENSG00000160284|Q9H0A9-2|SPATC1L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.782470703125	2	588.782222	1175.54989	0.46358	0.00027295	0.054022	3.1807E-05	0.5176	0.00030475	588.7821624569071	71.142	1.3686	71.117	70.804	72.173	-0.024872					136	49	4	0	0	0	9.0795E-24	5	18031	17991;18031;18082;18132;18332		232.37	143.47	1	9870800			60962	5455	35010	35011	74398;74399;74400;74401;74402	74399					-0.030862844848115856
YYLNNFDNI	9	Unmodified	_YYLNNFDNI_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	588.3081665039062	2	588.272021	1174.52949	0.22364	0.00013156	-0.42853	-0.00025209	-0.2049	-0.00012053	588.2718897332968	69.32	0.52891	69.32	69.037	69.566	0					33	18	2	0	0	0	0.044188	1	17530	17530		76.825	55.078	1	236830			60963	7645	35011	35012	74403	74403					-0.05079455144618805
YYLNNFDNI	9	Unmodified	_YYLNNFDNI_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	588.3077392578125	2	588.272021	1174.52949	0.33842	0.00019908	-0.54707	-0.00032183	-0.20865	-0.00012274	588.271764416218	69.264	0.72398	69.33	68.824	69.548	0.066048					65	25	4	0	0	0	0.089483	1	17513	17513		59.368	37.622	1	289050			60964	7645	35011	35012	74404	74404					-0.05079455144618805
YYLNNFDNI	9	Unmodified	_YYLNNFDNI_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	588.3081665039062	2	588.272021	1174.52949	0.28479	0.00016754	-0.31486	-0.00018522	-0.030071	-1.769E-05	588.2722499877419	69.384	0.72559	69.362	68.814	69.539	-0.022087					54	25	3	0	0	0	0.059987	1	17488	17488		53.404	43.33	1	267740			60965	7645	35011	35012	74405	74405					-0.05079455144618805
YYLNRFKDA	9	Unmodified	_YYLNRFKDA_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	594.7802124023438	2	595.303655	1188.59276	0.3032	0.00018049	3.8783	0.0023088	4.1815	0.0024893	595.306170798848	27.301	0.31248	27.279	27.069	27.382	-0.021412					16	10	2	0	0	0	0.25938	1	4555	4555		4.3292	0	1	60781			60966	8135	35012	35013	74406	74406					0.006005303632946379
YYLNRFKDA	9	Unmodified	_YYLNRFKDA_					0	0	0		ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	ENSG00000198825|ENST00000650623|INPP5F	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	595.303655	1188.59276	0.34619	0.00020609	4.5305	0.002697	4.8767	0.0029031	595.3067001227585	27.208	0.28695	27.208	27.121	27.408	0	-0.035597	0.00063293	NaN	4.3292	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42378			60967	8135	35012	35013							0.006005303632946379
YYLQGGFNKF	10	Unmodified	_YYLQGGFNKF_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.8060302734375	2	618.806031	1235.59751	0.38403	0.00023764	-0.23254	-0.0001439	0.15149	9.3741E-05	618.805900239155	57.154	0.5577	57.154	56.908	57.466	0					52	20	3	0	0	0	7.2605E-06	2	13780	13780;13837		152.41	122.57	1	711550			60968	5785	35013	35014	74407;74408	74407					-0.010865854939538622
YYLQGGFNKF	10	Unmodified	_YYLQGGFNKF_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.8057250976562	2	618.806031	1235.59751	0.13249	8.1983E-05	0.094703	5.8603E-05	0.22719	0.00014059	618.8057697197089	57.022	0.54729	57.101	56.883	57.43	0.078674					58	19	4	0	0	0	4.4129E-09	1	13744	13744		174.73	138.22	1	870940			60969	5785	35013	35014	74409	74409					-0.010865854939538622
YYLQGGFNKF	10	Unmodified	_YYLQGGFNKF_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.8060913085938	2	618.806031	1235.59751	0.061589	3.8112E-05	-0.25949	-0.00016057	-0.1979	-0.00012246	618.805706013052	57.45	0.62347	57.433	57.17	57.793	-0.0172					46	22	3	0	0	0	2.022E-05	2	13832	13832;13878		144.35	115.88	1	780770			60970	5785	35013	35014	74410;74411	74410					-0.010865854939538622
YYLQHPPISF	10	Unmodified	_YYLQHPPISF_					0	0	0		nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;nc|ENSG00000159842|Q12979-3|ABR;ENST00000572585.5_1_17:909322-915797:-|nuORF	nc|ENSG00000159842|Q12979-4|ABR	nc|ENSG00000159842|Q12979-4|ABR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	632.8216552734375	2	632.821681	1263.62881	0.48787	0.00030873	-0.036925	-2.3367E-05	0.45094	0.00028537	632.8216215845487	63.729	0.73763	63.729	63.474	64.212	0					62	26	4	0	0	0	0.0066037	2	15814	15767;15814		86.332	73.289	1	638980			60971	5426	35014	35015	74412;74413	74413					0.007539875401107565
YYLQHPPISF	10	Unmodified	_YYLQHPPISF_					0	0	0		nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;nc|ENSG00000159842|Q12979-3|ABR;ENST00000572585.5_1_17:909322-915797:-|nuORF	nc|ENSG00000159842|Q12979-4|ABR	nc|ENSG00000159842|Q12979-4|ABR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	632.8222045898438	2	632.821681	1263.62881	0.49716	0.00031461	-0.2451	-0.0001551	0.25206	0.00015951	632.8217053270512	63.636	0.67917	63.732	63.39	64.069	0.095722					55	23	4	0	0	0	0.0066037	2	15732	15732;15783		86.332	76.949	1	590950			60972	5426	35014	35015	74414;74415	74414					0.007539875401107565
YYLQHPPISF	10	Unmodified	_YYLQHPPISF_					0	0	0		nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;nc|ENSG00000159842|Q12979-3|ABR;ENST00000572585.5_1_17:909322-915797:-|nuORF	nc|ENSG00000159842|Q12979-4|ABR	nc|ENSG00000159842|Q12979-4|ABR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	632.822021484375	2	632.821681	1263.62881	0.63787	0.00040366	-0.2244	-0.00014201	0.41346	0.00026165	632.8214220292875	63.773	0.55875	63.764	63.458	64.017	-0.0095329					51	19	3	0	0	0	0.004829	2	15770	15770;15819		92.653	74.507	1	691040			60973	5426	35014	35015	74416;74417	74416					0.007539875401107565
YYLSHLERI	9	Unmodified	_YYLSHLERI_					0	0	0		ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	ENSG00000060558|ENST00000262958|GNA15	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.31787109375	2	597.319306	1192.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.904	1	45.964	45.464	46.464	0.059834								0	0	0	0.23182	1	10295	10295		12.241	2.8575	1				60974	747	35015	35016	74418	74418					0.03545103397368621
YYLSKIEEL	9	Unmodified	_YYLSKIEEL_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.3082885742188	2	579.308072	1156.60159	0.28306	0.00016398	0.39441	0.00022848	0.67746	0.00039246	579.3081825110922	58.082	0.91466	58.082	57.798	58.712	0					84	31	4	0	0	0	3.6949E-07	3	14063	14018;14063;14108		165.72	109.54	1	2458500			60975	1298	35016	35017	74419;74420;74421	74420					0.029554592091017184
YYLSKIEEL	9	Unmodified	_YYLSKIEEL_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.3081665039062	2	579.308072	1156.60159	0.34011	0.00019703	0.28298	0.00016393	0.62308	0.00036096	579.3081153715351	57.825	0.86472	57.911	57.659	58.524	0.085621					86	31	4	0	0	0	2.5511E-05	3	13987	13941;13987;14041		152.89	98.112	1	2432300			60976	1298	35016	35017	74422;74423;74424	74423					0.029554592091017184
YYLSKIEEL	9	Unmodified	_YYLSKIEEL_					0	0	0		nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	nc|ENSG00000087191|P62195-2|PSMC5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.30810546875	2	579.308072	1156.60159	0.59597	0.00034525	0.23557	0.00013647	0.83154	0.00048172	579.308032470726	58.227	0.92908	58.21	57.928	58.857	-0.0172					83	33	4	0	0	0	5.4053E-05	2	14069	14069;14121		148.27	94.435	1	2686400			60977	1298	35016	35017	74425;74426	74425					0.029554592091017184
YYLSPPESF	9	Unmodified	_YYLSPPESF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.326171875	2	551.758215	1101.50188	0.37478	0.00020679	0.57955	0.00031977	0.95433	0.00052656	551.7585745029041	68.302	1.497	68.302	67.732	69.229	0					130	54	4	0	0	0	0.0016474	1	17206	17206		100.37	57.403	1	1273600			60978	732	35017	35018	74427	74427					-0.04481358404859748
YYLSPPESF	9	Unmodified	_YYLSPPESF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.3253784179688	2	551.758215	1101.50188	0.38153	0.00021051	0.40934	0.00022586	0.79087	0.00043637	551.7585440089697	68.187	1.3667	68.259	67.651	69.018	0.071938					113	49	4	0	0	0	0.0069594	1	17201	17201		92.822	64.649	1	1682000			60979	732	35017	35018	74428	74428					-0.04481358404859748
YYLSPPESF	9	Unmodified	_YYLSPPESF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.326416015625	2	551.758215	1101.50188	0.42832	0.00023633	0.7122	0.00039296	1.1405	0.00062929	551.7585568305382	68.299	1.2538	68.28	67.641	68.895	-0.019157					97	44	3	0	0	0	0.0069594	1	17194	17194		71.134	42.96	1	1519100			60980	732	35017	35018	74429	74429					-0.04481358404859748
YYLSVALAGF	10	Unmodified	_YYLSVALAGF_					0	0	0			REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.3270874023438	2	552.292225	1102.5699	0.40111	0.00022153	2.9474	0.0016278	3.3485	0.0018493	552.2934921526398	68.054	0.38973	68.132	68.05	68.44	0.078049					19	13	2	0	0	0	0.31051	1	17114	17114		16.942	4.4107	1	344320	+		60981	16604	35018	35019	74430	74430					0.022715112457944997
YYLTDIDRI	9	Unmodified	_YYLTDIDRI_					0	0	0		ENSG00000156049|ENST00000341700|GNA14	ENSG00000156049|ENST00000341700|GNA14	ENSG00000156049|ENST00000341700|GNA14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.3037719726562	2	586.303321	1170.59209	0.1518	8.8999E-05	0.11283	6.6154E-05	0.26463	0.00015515	586.3031037583083	61.474	0.39597	61.474	61.307	61.703	0					24	14	2	0	0	0	0.015027	1	15128	15128		71.708	33.532	1	260850			60982	5216	35019	35020	74431	74431					0.013616909235679486
YYLTDIDRI	9	Unmodified	_YYLTDIDRI_					0	0	0		ENSG00000156049|ENST00000341700|GNA14	ENSG00000156049|ENST00000341700|GNA14	ENSG00000156049|ENST00000341700|GNA14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.2527465820312	2	586.303321	1170.59209	-0.057844	-3.3914E-05	-0.4197	-0.00024607	-0.47754	-0.00027999	586.3029510841271	61.399	0.51761	61.496	61.299	61.817	0.096985					25	18	2	0	0	0	0.17696	1	15024	15024		36.506	17.249	1	283930			60983	5216	35019	35020	74432	74432					0.013616909235679486
YYLTDIDRI	9	Unmodified	_YYLTDIDRI_					0	0	0		ENSG00000156049|ENST00000341700|GNA14	ENSG00000156049|ENST00000341700|GNA14	ENSG00000156049|ENST00000341700|GNA14	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.2881469726562	2	586.303321	1170.59209	0.086591	5.0768E-05	0.18122	0.00010625	0.26781	0.00015702	586.3031901427482	61.404	0.37254	61.395	61.271	61.644	-0.0094566					26	13	3	0	0	0	0.013404	1	15104	15104		74.2	30.341	1	327320			60984	5216	35019	35020	74433	74433					0.013616909235679486
YYLTDNLTF	9	Unmodified	_YYLTDNLTF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.2767944335938	2	575.276772	1148.53899	0.60229	0.00034648	-0.21186	-0.00012188	0.39042	0.0002246	575.2766342426576	77.687	1.1921	77.687	77.394	78.586	0					92	44	4	0	0	0	2.32E-07	4	20083	20034;20083;20140;20186		171.09	105.85	1	1224200			60985	8016	35020	35021	74434;74435;74436;74437	74435					-0.029336868591144594
YYLTDNLTF	9	Unmodified	_YYLTDNLTF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.27685546875	2	575.276772	1148.53899	0.71902	0.00041364	-0.42835	-0.00024642	0.29067	0.00016722	575.276518942035	77.698	0.92944	77.753	77.43	78.359	0.05542					81	33	4	0	0	0	5.7257E-07	4	20020	20020;20070;20120;20169		157.8	80.097	1	1295700			60986	8016	35020	35021	74438;74439;74440;74441	74438					-0.029336868591144594
YYLTDNLTF	9	Unmodified	_YYLTDNLTF_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.2769775390625	2	575.276772	1148.53899	0.72603	0.00041767	-0.41675	-0.00023975	0.30928	0.00017792	575.2765288959254	77.723	0.90125	77.692	77.346	78.247	-0.031334					83	32	4	0	0	0	9.9094E-17	4	20042	20042;20090;20141;20191		215.27	115.47	1	1374400			60987	8016	35020	35021	74442;74443;74444;74445	74442					-0.029336868591144594
YYLTDVDRI	9	Unmodified	_YYLTDVDRI_					0	0	0		ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.2951049804688	2	579.295496	1156.57644	0.8479	0.00049119	-0.51032	-0.00029563	0.33758	0.00019556	579.2951855661527	56.183	1.0194	56.183	55.992	57.012	0					58	37	3	0	0	0	0.0023895	2	13455	13455;13523		107.1	40.643	1	1474800			60988	1319	35021	35022	74446;74447	74446					0.004414044065242706
YYLTDVDRI	9	Unmodified	_YYLTDVDRI_					0	0	0		ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.2957153320312	2	579.295496	1156.57644	0.86792	0.00050278	-0.20449	-0.00011846	0.66343	0.00038432	579.2951994225348	56.089	0.54611	56.16	55.989	56.536	0.070885					39	19	3	0	0	0	0.003673	2	13433	13433;13491		96.936	39.214	1	1598200			60989	1319	35021	35022	74448;74449	74448					0.004414044065242706
YYLTDVDRI	9	Unmodified	_YYLTDVDRI_					0	0	0		ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.2957153320312	2	579.295496	1156.57644	0.93821	0.0005435	-0.33776	-0.00019566	0.60045	0.00034784	579.2951069244306	56.396	0.73347	56.376	56.159	56.892	-0.019077					54	26	3	0	0	0	0.0023895	2	13532	13532;13585		107.1	40.643	1	1541800			60990	1319	35021	35022	74450;74451	74450					0.004414044065242706
YYLTHGLYL	9	Unmodified	_YYLTHGLYL_					0	0	0		nc|ENSG00000101464|Q9H490-2|PIGU;ENSG00000101464|ENST00000217446|PIGU	nc|ENSG00000101464|Q9H490-2|PIGU	nc|ENSG00000101464|Q9H490-2|PIGU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7977294921875	2	571.797675	1141.5808	0.26619	0.0001522	-0.13381	-7.651E-05	0.13238	7.5694E-05	571.7975869519516	62.873	1.9197	62.873	62.45	64.37	0					161	70	4	0	0	0	2.3311E-08	8	15528	15482;15528;15579;15610;15661;15709;15758;15832		179.23	125.65	1	5522500			60991	1705	35022	35023	74452;74453;74454;74455;74456;74457;74458;74459	74453					0.0156691362010406
YYLTHGLYL	9	Unmodified	_YYLTHGLYL_					0	0	0		nc|ENSG00000101464|Q9H490-2|PIGU;ENSG00000101464|ENST00000217446|PIGU	nc|ENSG00000101464|Q9H490-2|PIGU	nc|ENSG00000101464|Q9H490-2|PIGU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.797607421875	2	571.797675	1141.5808	0.43027	0.00024602	-0.32668	-0.00018679	0.10359	5.9231E-05	571.7974317702813	62.743	1.5474	62.838	62.495	64.043	0.095722					145	55	4	0	0	0	2.3311E-08	5	15493	15493;15544;15569;15616;15667		179.23	132.31	1	5876400			60992	1705	35022	35023	74460;74461;74462;74463;74464	74460					0.0156691362010406
YYLTHGLYL	9	Unmodified	_YYLTHGLYL_					0	0	0		nc|ENSG00000101464|Q9H490-2|PIGU;ENSG00000101464|ENST00000217446|PIGU	nc|ENSG00000101464|Q9H490-2|PIGU	nc|ENSG00000101464|Q9H490-2|PIGU	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7977294921875	2	571.797675	1141.5808	0.21726	0.00012423	-0.043656	-2.4962E-05	0.17361	9.9267E-05	571.7976288473302	62.902	1.7739	62.894	62.542	64.316	-0.0085526					146	64	4	0	0	0	6.8028E-05	7	15523	15471;15523;15574;15598;15640;15692;15744		146.01	107.86	1	5300200			60993	1705	35022	35023	74465;74466;74467;74468;74469;74470;74471	74466					0.0156691362010406
YYLTPDGQRF	10	Unmodified	_YYLTPDGQRF_					0	0	0		nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2;ENSG00000171903|ENST00000402119|CYP4F11	nc|ENSG00000186115|P78329-2|CYP4F2	nc|ENSG00000186115|P78329-2|CYP4F2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	630.3067626953125	2	630.306395	1258.59824	0.60116	0.00037892	0.22772	0.00014354	0.82888	0.00052245	630.3064577289646	51.077	0.79935	51.077	50.766	51.565	0					91	29	4	0	0	0	8.5522E-05	2	11931	11872;11931		133.05	109.26	1	2957000			60994	6594	35023	35024	74472;74473	74473					-0.020717908449114475
YYLTPDGQRF	10	Unmodified	_YYLTPDGQRF_					0	0	0		nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2;ENSG00000171903|ENST00000402119|CYP4F11	nc|ENSG00000186115|P78329-2|CYP4F2	nc|ENSG00000186115|P78329-2|CYP4F2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	629.8312377929688	2	630.306395	1258.59824	0.42484	0.00026778	-0.43905	-0.00027673	-0.014212	-8.9582E-06	630.3062725651679	52.711	0.3561	52.711	52.55	52.906	0					16	12	2	0	0	0	0.31555	1	12380	12380		20.415	8.1739	1	320150			60995	6594	35023	35024	74474	74474					-0.020717908449114475
YYLTPDGQRF	10	Unmodified	_YYLTPDGQRF_					0	0	0		nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2;ENSG00000171903|ENST00000402119|CYP4F11	nc|ENSG00000186115|P78329-2|CYP4F2	nc|ENSG00000186115|P78329-2|CYP4F2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	630.3068237304688	2	630.306395	1258.59824	0.34788	0.00021927	0.36103	0.00022756	0.7089	0.00044683	630.3065997305321	51.079	0.73434	51.125	50.794	51.528	0.046574					90	27	4	0	0	0	3.3013E-05	3	11916	11862;11916;11961		136.39	100.27	1	2793600			60996	6594	35023	35024	74475;74476;74477	74476					-0.020717908449114475
YYLTPDGQRF	10	Unmodified	_YYLTPDGQRF_					0	0	0		nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2;ENSG00000171903|ENST00000402119|CYP4F11	nc|ENSG00000186115|P78329-2|CYP4F2	nc|ENSG00000186115|P78329-2|CYP4F2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	630.3067016601562	2	630.306395	1258.59824	0.49734	0.00031348	0.19661	0.00012393	0.69395	0.0004374	630.306441409837	51.194	1.052	51.204	50.835	51.887	0.0095634					96	39	4	0	0	0	1.5674E-06	3	11880	11880;11933;11983		155.95	119.83	1	2803900			60997	6594	35023	35024	74478;74479;74480	74478					-0.020717908449114475
YYLTPDGQRF	10	Unmodified	_YYLTPDGQRF_					0	0	0		nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2;ENSG00000171903|ENST00000402119|CYP4F11	nc|ENSG00000186115|P78329-2|CYP4F2	nc|ENSG00000186115|P78329-2|CYP4F2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	630.306395	1258.59824	0.41749	0.00026315	0.39333	0.00024792	0.81082	0.00051106	630.3068112873532	52.713	0.40524	52.764	52.579	52.984	0.050575	-0.052353	0.00020157	NaN	20.415	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217340			60998	6594	35023	35024							-0.020717908449114475
YYLTPDGQRF	10	Unmodified	_YYLTPDGQRF_					0	0	0		nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2;ENSG00000171903|ENST00000402119|CYP4F11	nc|ENSG00000186115|P78329-2|CYP4F2	nc|ENSG00000186115|P78329-2|CYP4F2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	630.306395	1258.59824	0.34053	0.00021464	0.57825	0.00036447	0.91878	0.00057912	630.3068848433429	52.983	0.34778	52.973	52.708	53.056	-0.0096054	0.15737	0.00043468	NaN	20.415	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206830			60999	6594	35023	35024							-0.020717908449114475
YYLVTLPWS	9	Unmodified	_YYLVTLPWS_					0	0	0			REV__ENST00000473770.5_1_22:32017296-32019834:-|nuORF	REV__ENST00000473770.5_1_22:32017296-32019834:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	570.8277587890625	2	571.30005	1140.58555	-0.19099	-0.00010911	-0.63607	-0.00036339	-0.82706	-0.0004725	571.2995693962717	12.638	0.23951	12.57	12.463	12.702	-0.067495					9	7	2	0	0	0	0.26251	1	162	162		0.6015	0	1	12620	+		61000	21384	35024	35025	74481	74481					0.02087797762851551
YYLVTLPWS	9	Unmodified	_YYLVTLPWS_					0	0	0			REV__ENST00000473770.5_1_22:32017296-32019834:-|nuORF	REV__ENST00000473770.5_1_22:32017296-32019834:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	571.30005	1140.58555	-0.11055	-6.316E-05	-0.18722	-0.00010696	-0.29777	-0.00017012	571.3000277231981	12.589	0.14263	12.589	12.526	12.669	0	0.0091402	0.00037414	NaN	0.6015	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16600	+		61001	21384	35024	35025							0.02087797762851551
YYLYNHVAM	9	Unmodified	_YYLYNHVAM_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1;ENST00000514104.5_1_5:145522433-145523105:-|nuORF;ENST00000512412.1_1_5:145519224-145523084:-|nuORF	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.794189453125	2	587.273509	1172.53247	0.46092	0.00027069	-4.4039	-0.0025863	-3.9429	-0.0023156	587.2710907092398	43.268	0.42038	43.345	43.263	43.684	0.077515					19	14	2	0	0	0	0.24913	1	9558	9558		12.532	2.3482	1	259680			61002	3726	35025	35026	74482	74482					-0.04689903291455266
YYMDYLAAL	9	Oxidation (M)	_YYM(Oxidation (M))DYLAAL_		YYM(1)DYLAAL		YYM(51)DYLAAL	0	0	1		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.7601318359375	2	569.759901	1137.50525	0.40627	0.00023148	0.31149	0.00017747	0.71776	0.00040895	569.7598895476748	75.048	1.0377	75.048	74.731	75.769	0					81	36	3	0	0	0	0.055495	2	19289	19238;19289		50.855	30.401	1	1543200			61003	3255	35026	35027	74483;74484	74484		418			-0.05800431622492397
YYMDYLAAL	9	Oxidation (M)	_YYM(Oxidation (M))DYLAAL_		YYM(1)DYLAAL		YYM(48)DYLAAL	0	0	1		ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.7601318359375	2	569.759901	1137.50525	0.53405	0.00030428	0.36795	0.00020964	0.90199	0.00051392	569.7598698304794	75.083	0.99045	75.051	74.786	75.777	-0.031479					84	36	4	0	0	0	0.062246	2	19236	19236;19284		48.346	27.892	1	1556700			61004	3255	35026	35027	74485;74486	74485		418			-0.05800431622492397
YYMHPNVMGF	10	Unmodified	_YYMHPNVMGF_					0	0	0			REV__nc|ENSG00000078795|Q9NZM6-6|PKD2L2	REV__nc|ENSG00000078795|Q9NZM6-6|PKD2L2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	420.5832214355469	3	420.184305	1257.53109	0.23601	9.9167E-05	0.063179	2.6547E-05	0.29919	0.00012571	420.5184866407962	46.593	0.62909	46.645	46.326	46.955	0.052574					47	22	3	0	0	0	0.32068	1	10549	10549		1.7423	0	1	801600	+		61005	13862	35027	35028	74487	74487					-0.08737860651876872
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(190)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.7793579101562	2	597.778625	1193.5427	0.72933	0.00043598	-0.35611	-0.00021287	0.37322	0.00022311	597.7789026416098	47.973	4.5161	47.973	46.992	51.508	0					414	164	6	0	0	0	4.1361E-11	14	10924	10875;10924;10976;11028;11074;11116;11160;11210;11253;11304;11352;11406;11902;11971		189.78	143.76	1	291520000			61006	6107	35028	35029	74488;74489;74490;74491;74492;74493;74494;74495;74496;74497;74498;74499;74500;74501	74489		715			-0.046333403568951326
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(58)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	598.3216552734375	2	597.778625	1193.5427	0.59981	0.00035855	0.048872	2.9215E-05	0.64868	0.00038777	597.7787301752211	53.166	1.2304	53.166	52.875	54.105	0					69	45	2	0	0	0	0.090256	1	12547	12547		57.722	39.576	1	313300			61007	6107	35028	35029	74502	74502		715			-0.046333403568951326
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(190)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.7788696289062	2	597.778625	1193.5427	0.87919	0.00052556	-0.40594	-0.00024266	0.47325	0.0002829	597.7787846392541	47.866	4.6393	47.913	46.841	51.48	0.04752					437	172	6	0	0	0	3.6475E-11	16	11134	10833;10884;10934;10986;11036;11085;11134;11175;11227;11271;11320;11370;11415;11509;11817;11891		191.38	147.68	1	271650000			61008	6107	35028	35029	74503;74504;74505;74506;74507;74508;74509;74510;74511;74512;74513;74514;74515;74516;74517;74518	74509		715			-0.046333403568951326
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(74)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8878784179688	2	597.778625	1193.5427	0.59737	0.00035709	0.0064657	3.865E-06	0.60383	0.00036096	597.778698229178	52.124	1.1907	52.175	51.817	53.008	0.050571					74	43	2	0	0	0	0.052436	1	12324	12324		74.2	52.663	1	406480			61009	6107	35028	35029	74519	74519		715			-0.046333403568951326
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(46)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.321533203125	2	597.778625	1193.5427	0.54587	0.00032631	-0.15312	-9.1532E-05	0.39275	0.00023478	597.7784589148945	53.328	1.7571	53.384	53.013	54.77	0.056259					97	65	2	0	0	0	0.11018	1	12591	12591		45.74	32.697	1	342590			61010	6107	35028	35029	74520	74520		715			-0.046333403568951326
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(220)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.7789916992188	2	597.778625	1193.5427	0.60684	0.00036276	-0.12185	-7.2841E-05	0.48499	0.00028991	597.7789348969183	47.842	4.749	47.885	46.897	51.646	0.04332					456	176	6	0	0	0	3.0823E-17	17	10864	10817;10864;10916;10967;11015;11065;11112;11166;11222;11270;11321;11372;11421;11470;11809;11905;11958		223.06	168.29	1	274350000			61011	6107	35028	35029	74521;74522;74523;74524;74525;74526;74527;74528;74529;74530;74531;74532;74533;74534;74535;74536;74537	74522		715			-0.046333403568951326
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(89)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.7791137695312	2	597.778625	1193.5427	0.29877	0.0001786	0.28366	0.00016956	0.58242	0.00034816	597.7788606017327	52.465	1.7174	52.464	51.928	53.646	-0.00081253					82	63	2	0	0	0	0.0046246	1	12359	12359		89.401	58.764	1	473790			61012	6107	35028	35029	74538	74538		715			-0.046333403568951326
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_		YYM(1)IGEQKF		YYM(53)IGEQKF	0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.3399047851562	2	597.778625	1193.5427	0.57456	0.00034346	-0.35178	-0.00021028	0.22278	0.00013318	597.7782616447645	54.145	1.2697	54.129	53.63	54.9	-0.015923					81	45	2	0	0	0	0.11018	1	12694	12694		53.404	43.33	1	322260			61013	6107	35028	35029	74539	74539		715			-0.046333403568951326
YYMIGEQKF	9	Oxidation (M)	_YYM(Oxidation (M))IGEQKF_					0	0	1		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	597.778625	1193.5427	0.45284	0.0002707	0.55226	0.00033013	1.0051	0.00060083	597.7791733890472	52.393	1.0078	52.393	51.648	52.656	0	0.049245	0.00041392	NaN	89.401	56	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	463210			61014	6107	35028	35029				715			-0.046333403568951326
YYMKDLPTSF	10	Oxidation (M)	_YYM(Oxidation (M))KDLPTSF_		YYM(1)KDLPTSF		YYM(150)KDLPTSF	0	0	1		ENSG00000241973|ENST00000255882|PI4KA;PI4KA|p.S1815*|1|0.23|ENSG00000241973|chr22:20714476-20714477|-/A|frameshift_variant;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	640.7970581054688	2	640.797014	1279.57948	0.76241	0.00048855	-0.40872	-0.0002619	0.35369	0.00022665	640.7968490831647	50.518	1.2908	50.518	50.217	51.508	0					145	47	5	0	0	0	8.7593E-06	3	11682	11682;11729;11782		151.48	118.69	1	5558900			61015	8538	35029	35030	74540;74541;74542	74540		912			-0.04913088530997811
YYNCGLRSGF	10	Unmodified	_YYNCGLRSGF_					0	0	0			REV__ENSG00000142615|ENST00000359621|CELA2A	REV__ENSG00000142615|ENST00000359621|CELA2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.2669677734375	2	590.266216	1178.51788	0.19582	0.00011559	-0.068815	-4.0619E-05	0.12701	7.4968E-05	590.2662787120066	76.297	0.87183	76.35	76.161	77.033	0.053413					51	30	2	0	0	0	0.37587	1	19649	19649		7.9102	0.62092	1	294590	+		61016	16130	35030	35031	74543	74543					-0.0642397543961124
YYNCGLRSGF	10	Unmodified	_YYNCGLRSGF_					0	0	0			REV__ENSG00000142615|ENST00000359621|CELA2A	REV__ENSG00000142615|ENST00000359621|CELA2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.7649536132812	2	590.266216	1178.51788	0.19582	0.00011559	-0.068815	-4.0619E-05	0.12701	7.4968E-05	590.2662787120066	76.297	0.87183	76.35	76.161	77.033	0.053413					51	30	2	0	0	0	0.31745	1	19751	19751		7.9102	0	1	294590	+		61017	16130	35030	35031	74544	74544					-0.0642397543961124
YYNQAAGLWS	10	Unmodified	_YYNQAAGLWS_					0	0	0			REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	REV__ENST00000528727.5_1_11:99426939-100095567:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.8087768554688	2	586.772188	1171.52982	0.21282	0.00012488	0.83591	0.00049049	1.0487	0.00061536	586.7726410969663	41.19	0.29893	41.28	41.079	41.378	0.090248					16	10	2	0	0	0	0.26638	1	8873	8873		30.637	16.73	1	190160	+		61018	16488	35031	35032	74545	74545					-0.049080354247507785
YYNQAYFLL	9	Unmodified	_YYNQAYFLL_					0	0	0		ENSG00000113790|ENST00000231887|EHHADH;nc|ENSG00000113790|Q08426-2|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.8560791015625	2	597.795132	1193.57571	0.44812	0.00026789	-1.3676	-0.00081752	-0.91943	-0.00054963	597.7944272329734	81.11	0.35989	81.11	80.92	81.28	0					24	16	2	0	0	0	0.25526	1	21084	21084		7.9102	0	1	85127			61019	2531	35032	35033	74546	74546					-0.013333902425074484
YYNQAYFLL	9	Unmodified	_YYNQAYFLL_					0	0	0		ENSG00000113790|ENST00000231887|EHHADH;nc|ENSG00000113790|Q08426-2|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	ENSG00000113790|ENST00000231887|EHHADH	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.8565063476562	2	597.795132	1193.57571	0.2453	0.00014664	-0.53745	-0.00032128	-0.29215	-0.00017464	598.2960342079546	81.052	0.3304	81.117	80.946	81.277	0.065094					29	16	2	0	0	0	0.24311	1	21042	21042		16.942	4.4107	1	102800			61020	2531	35032	35033	74547	74547					-0.013333902425074484
YYNRVHIL	8	Unmodified	_YYNRVHIL_					0	0	0		ENST00000498794.1_1_3:49053023-49053293:-|nuORF;ENST00000460505.5_1_3:49053023-49053570:-|nuORF;nc|ENSG00000178149|Q5D0E6-4|DALRD3;ENSG00000178149|ENST00000341949|DALRD3	ENST00000498794.1_1_3:49053023-49053293:-|nuORF	ENST00000498794.1_1_3:49053023-49053293:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	539.2630615234375	2	539.295633	1076.57671	0.5769	0.00031112	1.2307	0.00066371	1.8076	0.00097483	539.7976840957101	72.055	0.27135	72.111	71.977	72.249	0.056572					15	9	2	0	0	0	0.33995	1	18352	18352		15.768	3.2367	1	114040			61021	7037	35033	35034	74548	74548					0.04148868917036452
YYNRVHIL	8	Unmodified	_YYNRVHIL_					0	0	0		ENST00000498794.1_1_3:49053023-49053293:-|nuORF;ENST00000460505.5_1_3:49053023-49053570:-|nuORF;nc|ENSG00000178149|Q5D0E6-4|DALRD3;ENSG00000178149|ENST00000341949|DALRD3	ENST00000498794.1_1_3:49053023-49053293:-|nuORF	ENST00000498794.1_1_3:49053023-49053293:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	539.295633	1076.57671	0.61468	0.0003315	2.3816	0.0012844	2.9963	0.0016159	539.7978496684801	71.806	0.70398	71.778	71.602	72.306	-0.027275	-0.16642	0.00035513	NaN	15.768	33	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257440			61022	7037	35033	35034							0.04148868917036452
YYNSACRIS	9	Unmodified	_YYNSACRIS_					0	0	0		ENSG00000002933|ENST00000004103|TMEM176A;ENST00000481305.1_1_7:150500415-150501953:+|nuORF;ENST00000475007.5_1_7:150500316-150501569:+|nuORF	ENSG00000002933|ENST00000004103|TMEM176A	ENSG00000002933|ENST00000004103|TMEM176A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2955932617188	2	538.745116	1075.47568	0.33282	0.00017931	2.289	0.0012332	2.6218	0.0014125	538.7459015189204	68.414	0.35002	68.486	68.24	68.59	0.071938					15	12	2	0	0	0	0.25417	1	17212	17212		8.5933	0	1	217040			61023	299	35034	35035	74549	74549					-0.05903950847982742
YYNSLLLTF	9	Unmodified	_YYNSLLLTF_					0	0	0			REV__nc|ENSG00000259334|Q86U02|LINC00596	REV__nc|ENSG00000259334|Q86U02|LINC00596	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.329833984375	2	567.297507	1132.58046	0.53109	0.00030129	1.4758	0.00083724	2.0069	0.0011385	567.298327643789	83.308	0.55063	83.381	83.184	83.734	0.073097					48	20	3	0	0	0	0.24688	1	21841	21841		6.2058	0	1	575350	+		61024	23225	35035	35036	74550	74550					0.019474939002293468
YYNSLLLTF	9	Unmodified	_YYNSLLLTF_					0	0	0			REV__nc|ENSG00000259334|Q86U02|LINC00596	REV__nc|ENSG00000259334|Q86U02|LINC00596	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3296508789062	2	567.297507	1132.58046	0.46115	0.00026161	0.68011	0.00038583	1.1413	0.00064744	567.2978777889995	83.458	0.53607	83.441	83.187	83.723	-0.016823					57	22	3	0	0	0	0.24688	1	21812	21812		10.074	6.7926	1	607530	+		61025	23225	35035	35036	74551	74551					0.019474939002293468
YYNTDMAPKF	10	Unmodified	_YYNTDMAPKF_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7	REV__ENSG00000092439|ENST00000646667|TRPM7	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.1888732910156	3	417.190113	1248.54851	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.546	1	51.546	51.046	52.046	0								0	0	0	0.35461	1	12036	12036		12.873	0.63195	1		+		61026	14081	35036	35037	74552	74552					-0.06582241845239878
YYNTITNF	8	Unmodified	_YYNTITNF_					0	0	0		nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	nc|ENSG00000071794|Q14527-2|HLTF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	517.8037719726562	2	518.242732	1034.47091	0.38542	0.00019974	-0.087073	-4.5125E-05	0.29835	0.00015462	518.2425929937882	58.894	0.52793	58.894	58.739	59.267	0					38	18	3	0	0	0	0.27906	1	14308	14308		34.402	7.5181	1	333490			61027	962	35037	35038	74553	74553					-0.044945117190763995
YYPAAPLPGF	10	Unmodified	_YYPAAPLPGF_					0	0	0		ENST00000592494.1_1_17:73759392-73761232:-|nuORF;GALK1|p.S254Afs*10|1|0.48|ENSG00000108479|chr17:75762737-75762737|T/-|frameshift_variant;ENSG00000108479|ENST00000588479|GALK1	ENST00000592494.1_1_17:73759392-73761232:-|nuORF	ENST00000592494.1_1_17:73759392-73761232:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	547.8160400390625	2	548.279118	1094.54368	0.27336	0.00014988	1.2982	0.0007118	1.5716	0.00086168	548.2798993499481	76.256	0.45193	76.256	76.049	76.501	0					25	15	2	0	0	0	0.25344	1	19638	19638		32.117	8.9685	1	235220			61028	2188	35038	35039	74554	74554					0.0001924207433603442
YYPAKIEAI	9	Unmodified	_YYPAKIEAI_					0	0	0		nc|ENSG00000129292|A8MW92-2|PHF20L1;ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1;ENSG00000129292|ENST00000395386|PHF20L1	nc|ENSG00000129292|A8MW92-2|PHF20L1	nc|ENSG00000129292|A8MW92-2|PHF20L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	534.2925415039062	2	534.292225	1066.5699	0.7512	0.00040136	-0.45396	-0.00024255	0.29724	0.00015881	534.2918259742526	48.006	0.78463	48.006	47.797	48.582	0					51	27	3	0	0	0	0.03069	1	10943	10943		60.074	43.925	1	3258500			61029	3419	35039	35040	74555	74555					0.039275112458199146
YYPAKIEAI	9	Unmodified	_YYPAKIEAI_					0	0	0		nc|ENSG00000129292|A8MW92-2|PHF20L1;ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1;ENSG00000129292|ENST00000395386|PHF20L1	nc|ENSG00000129292|A8MW92-2|PHF20L1	nc|ENSG00000129292|A8MW92-2|PHF20L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	534.2926025390625	2	534.292225	1066.5699	0.72239	0.00038597	-1.3102	-0.00070005	-0.58785	-0.00031408	534.2909695696196	47.989	1.2039	48.036	47.428	48.632	0.047523					80	44	3	0	0	0	0.05341	2	10921	10921;11019		51.63	28.894	1	3933800			61030	3419	35039	35040	74556;74557	74556					0.039275112458199146
YYPAKIEAI	9	Unmodified	_YYPAKIEAI_					0	0	0		nc|ENSG00000129292|A8MW92-2|PHF20L1;ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1;ENSG00000129292|ENST00000395386|PHF20L1	nc|ENSG00000129292|A8MW92-2|PHF20L1	nc|ENSG00000129292|A8MW92-2|PHF20L1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	534.292236328125	2	534.292225	1066.5699	0.69198	0.00036972	-1.4778	-0.00078957	-0.7858	-0.00041985	534.2910292493916	47.931	1.0779	47.974	47.455	48.533	0.04332					65	40	2	0	0	0	0.074552	1	10898	10898		43.772	23.319	1	4208900			61031	3419	35039	35040	74558	74558					0.039275112458199146
YYPEHFTLL	9	Unmodified	_YYPEHFTLL_					0	0	0		ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	591.7952880859375	2	591.795132	1181.57571	0.65763	0.00038918	0.056782	3.3603E-05	0.71441	0.00042279	591.7949843331398	64.24	1.0727	64.24	63.915	64.988	0					104	39	4	0	0	0	0.0085732	2	15988	15940;15988		81.613	49.308	1	1490400			61032	1526	35040	35041	74559;74560	74560					-0.00781390242514135
YYPEHFTLL	9	Unmodified	_YYPEHFTLL_					0	0	0		ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	591.7954711914062	2	591.795132	1181.57571	0.55656	0.00032937	0.035233	2.085E-05	0.59179	0.00035022	591.795086024658	64.147	1.0629	64.24	63.9	64.962	0.09288					99	38	4	0	0	0	0.0046874	2	15898	15898;15951		88.904	59.822	1	1545300			61033	1526	35040	35041	74561;74562	74561					-0.00781390242514135
YYPEHFTLL	9	Unmodified	_YYPEHFTLL_					0	0	0		ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	ENSG00000100065|ENST00000251973|CARD10	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	591.79541015625	2	591.795132	1181.57571	0.60423	0.00035758	-0.17041	-0.00010085	0.43382	0.00025673	591.7950000709386	64.248	0.89862	64.238	63.936	64.835	-0.0095367					92	32	4	0	0	0	0.0037552	3	15981	15929;15981;16027		96.285	60.158	1	1729800			61034	1526	35040	35041	74563;74564;74565	74564					-0.00781390242514135
YYPELAFQF	9	Unmodified	_YYPELAFQF_					0	0	0		ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3433227539062	2	589.281857	1176.54916	0.56411	0.00033242	0.54488	0.00032109	1.109	0.00065351	589.2821872582322	86.605	0.76709	86.605	86.326	87.093	0					79	30	4	0	0	0	0.12563	1	22795	22795		39.95	29.876	1	776070			61035	1754	35041	35042	74566	74566					-0.032050791338633644
YYPELAFQF	9	Unmodified	_YYPELAFQF_					0	0	0		ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	589.3431396484375	2	589.281857	1176.54916	0.41613	0.00024522	0.80922	0.00047686	1.2253	0.00072208	589.2823403721306	86.487	0.67178	86.571	86.286	86.958	0.084251					73	27	4	0	0	0	0.15943	1	22756	22756		39.95	27.418	1	737440			61036	1754	35041	35042	74567	74567					-0.032050791338633644
YYPELAFQF	9	Unmodified	_YYPELAFQF_					0	0	0		ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	ENSG00000102218|ENST00000218340|RP2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.34326171875	2	589.281857	1176.54916	0.52693	0.00031051	1.035	0.0006099	1.5619	0.00092041	589.2828355521616	86.602	1.8098	86.594	85.587	87.397	-0.0085983					113	71	3	0	0	0	0.12563	1	22802	22802		47.749	32.91	1	807950			61037	1754	35041	35042	74568	74568					-0.032050791338633644
YYPEYKLLF	9	Unmodified	_YYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.3211669921875	2	618.320983	1234.62741	0.26105	0.00016141	0.053873	3.3311E-05	0.31492	0.00019472	618.3209767620631	70.459	1.3277	70.459	70.103	71.431	0					163	47	5	0	0	0	0.014206	3	17858	17812;17858;17911		72.968	57.121	1	11014000			61038	5423	35042	35043	74569;74570;74571	74570					0.019483534513710765
YYPEYKLLF	9	Unmodified	_YYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.3229370117188	2	618.320983	1234.62741	0.29243	0.00018082	0.2858	0.00017671	0.57823	0.00035753	618.321157363278	71.856	1.9957	71.856	71.718	73.713	0					100	72	2	0	0	0	0.29176	1	18350	18350		10.074	0.52995	1	168490			61039	5423	35042	35043	74572	74572					0.019483534513710765
YYPEYKLLF	9	Unmodified	_YYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.3212890625	2	618.320983	1234.62741	0.15659	9.6825E-05	0.14095	8.7155E-05	0.29755	0.00018398	618.3210481416019	70.47	1.2793	70.531	70.155	71.434	0.060776					160	45	5	0	0	0	0.014206	5	17850	17801;17850;17902;18005;18057		72.968	53.137	1	12135000			61040	5423	35042	35043	74573;74574;74575;74576;74577	74574					0.019483534513710765
YYPEYKLLF	9	Unmodified	_YYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.3218383789062	2	618.320983	1234.62741	0.20885	0.00012914	0.078961	4.8823E-05	0.28781	0.00017796	618.3212756767942	71.912	1.9284	71.968	71.68	73.608	0.056572					88	70	2	0	0	0	0.2719	1	18344	18344		13.042	3.6593	1	179980			61041	5423	35042	35043	74578	74578					0.019483534513710765
YYPEYKLLF	9	Unmodified	_YYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.3211669921875	2	618.320983	1234.62741	0.27461	0.0001698	0.015744	9.7347E-06	0.29036	0.00017953	618.3209800662282	70.569	1.3745	70.544	70.134	71.509	-0.024872					166	49	5	0	0	0	0.014206	5	17860	17812;17860;17905;17957;18057		72.968	57.121	1	14025000			61042	5423	35042	35043	74579;74580;74581;74582;74583	74580					0.019483534513710765
YYPEYKLLF	9	Unmodified	_YYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.3221435546875	2	618.320983	1234.62741	0.31692	0.00019596	0.39561	0.00024462	0.71253	0.00044057	618.3212951452994	72.248	1.953	72.22	71.819	73.772	-0.027275					93	70	2	0	0	0	0.23767	2	18372	18372;18740		18.146	11.045	1	229240			61043	5423	35042	35043	74584;74585	74584					0.019483534513710765
YYPGIILGF	9	Unmodified	_YYPGIILGF_					0	0	0		ENSG00000184497|ENST00000375353|TMEM255B	ENSG00000184497|ENST00000375353|TMEM255B	ENSG00000184497|ENST00000375353|TMEM255B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.7837524414062	2	521.784036	1041.55352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.297	1	90.297	89.797	90.797	0								0	0	0	0.14247	1	23930	23930		36.466	4.3492	1				61044	7457	35043	35044	74586	74586					0.03440430079717771
YYPGIILGF	9	Unmodified	_YYPGIILGF_					0	0	0		ENSG00000184497|ENST00000375353|TMEM255B	ENSG00000184497|ENST00000375353|TMEM255B	ENSG00000184497|ENST00000375353|TMEM255B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.7841186523438	2	521.784036	1041.55352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.166	1	90.257	89.757	90.757	0.090668								0	0	0	0.028306	1	23883	23883		67.413	35.296	1				61045	7457	35043	35044	74587	74587					0.03440430079717771
YYPGIILGF	9	Unmodified	_YYPGIILGF_					0	0	0		ENSG00000184497|ENST00000375353|TMEM255B	ENSG00000184497|ENST00000375353|TMEM255B	ENSG00000184497|ENST00000375353|TMEM255B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.784423828125	2	521.784036	1041.55352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.257	1	90.257	89.757	90.757	0.0003891								0	0	0	0.028306	1	23904	23904		67.413	35.296	1				61046	7457	35043	35044	74588	74588					0.03440430079717771
YYPGIILGF	9	Unmodified	_YYPGIILGF_					0	0	0		ENSG00000184497|ENST00000375353|TMEM255B	ENSG00000184497|ENST00000375353|TMEM255B	ENSG00000184497|ENST00000375353|TMEM255B	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.78369140625	2	521.784036	1041.55352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.418	1	90.418	89.918	90.918	0.0003891								0	0	0	0.066147	1	23954	23954		56.048	17.897	1				61047	7457	35043	35044	74589	74589					0.03440430079717771
YYPGSGIAQF	10	Unmodified	_YYPGSGIAQF_					0	0	0		PROS1|p.V510Gfs*3|1|0.37|ENSG00000184500|chr3:93879278-93879278|A/-|frameshift_variant;ENSG00000184500|ENST00000394236|PROS1	PROS1|p.V510Gfs*3|1|0.37|ENSG00000184500|chr3:93879278-93879278|A/-|frameshift_variant	PROS1|p.V510Gfs*3|1|0.37|ENSG00000184500|chr3:93879278-93879278|A/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.25537109375	2	551.763832	1101.51311	0.50449	0.00027836	0.52988	0.00029237	1.0344	0.00057073	551.7639352907681	63.209	1.1883	63.305	62.985	64.173	0.095722					73	42	2	0	0	0	0.255	1	15854	15854		27.629	1.3607	1	1926400			61048	7458	35044	35045	74590	74590					-0.03358536310724958
YYPGTGVAQF	10	Unmodified	_YYPGTGVAQF_					0	0	0		CON__P07224	CON__P07224	CON__P07224	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.2553100585938	2	551.763832	1101.51311	0.43163	0.00023816	0.67213	0.00037086	1.1038	0.00060901	551.7640237971528	63.355	1.5521	63.355	63.011	64.563	0					83	56	2	0	0	0	0.255	1	15926	15926		34.402	5.3201	1	2085600		+	61049	214	35045	35046	74591	74591					-0.03358536310724958
YYPGTGVAQF	10	Unmodified	_YYPGTGVAQF_					0	0	0		CON__P07224	CON__P07224	CON__P07224	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	551.763832	1101.51311	0.46697	0.00025766	0.51583	0.00028461	0.9828	0.00054227	551.7639373315142	63.358	1.1365	63.349	62.938	64.075	-0.0085526	0.012805	-6.2883E-05	NaN	34.402	73	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1837800		+	61050	214	35045	35046							-0.03358536310724958
YYPIMVTQL	9	Oxidation (M)	_YYPIM(Oxidation (M))VTQL_		YYPIM(1)VTQL		YYPIM(58)VTQL	0	0	1		nc|ENSG00000184988|Q96A25-2|TMEM106A;ENSG00000184988|ENST00000612339|TMEM106A	nc|ENSG00000184988|Q96A25-2|TMEM106A	nc|ENSG00000184988|Q96A25-2|TMEM106A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2899780273438	2	572.291368	1142.56818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.796	1	69.862	69.362	70.362	0.066048								0	0	0	0.060574	1	17651	17651		57.722	6.0922	1				61051	7491	35046	35047	74592	74592		829			0.0026013416554633295
YYPIMVTQL	9	Oxidation (M)	_YYPIM(Oxidation (M))VTQL_		YYPIM(1)VTQL		YYPIM(89)VTQL	0	0	1		nc|ENSG00000184988|Q96A25-2|TMEM106A;ENSG00000184988|ENST00000612339|TMEM106A	nc|ENSG00000184988|Q96A25-2|TMEM106A	nc|ENSG00000184988|Q96A25-2|TMEM106A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2901611328125	2	572.291368	1142.56818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.875	1	69.941	69.441	70.441	0.066048								0	0	0	0.0043377	1	17675	17675		88.954	35.121	1				61052	7491	35046	35047	74593	74593		829			0.0026013416554633295
YYPIMVTQL	9	Oxidation (M)	_YYPIM(Oxidation (M))VTQL_		YYPIM(1)VTQL		YYPIM(93)VTQL	0	0	1		nc|ENSG00000184988|Q96A25-2|TMEM106A;ENSG00000184988|ENST00000612339|TMEM106A	nc|ENSG00000184988|Q96A25-2|TMEM106A	nc|ENSG00000184988|Q96A25-2|TMEM106A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2902221679688	2	572.291368	1142.56818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.95	1	70.016	69.516	70.516	0.066048								0	0	0	0.0018926	1	17698	17698		92.653	34.931	1				61053	7491	35046	35047	74594	74594		829			0.0026013416554633295
YYPIMVTQL	9	Oxidation (M)	_YYPIM(Oxidation (M))VTQL_		YYPIM(1)VTQL		YYPIM(63)VTQL	0	0	1		nc|ENSG00000184988|Q96A25-2|TMEM106A;ENSG00000184988|ENST00000612339|TMEM106A	nc|ENSG00000184988|Q96A25-2|TMEM106A	nc|ENSG00000184988|Q96A25-2|TMEM106A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	572.2899780273438	2	572.291368	1142.56818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.12	1	70.186	69.686	70.686	0.066048								0	0	0	0.044423	1	17750	17750		62.573	26.446	1				61054	7491	35046	35047	74595	74595		829			0.0026013416554633295
YYPKTNALYF	10	Unmodified	_YYPKTNALYF_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	640.3220825195312	2	640.321514	1278.62847	0.86247	0.00055226	-0.9575	-0.00061311	-0.095028	-6.0848E-05	640.3207044908407	56.316	1.0312	56.395	56.146	57.177	0.078674					64	38	2	0	0	0	0.22295	1	13483	13483		29.841	17.6	1	793590			61055	586	35047	35048	74596	74596					0.00030567820294891135
YYPKTNALYF	10	Unmodified	_YYPKTNALYF_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	640.3215942382812	2	640.321514	1278.62847	1.0397	0.00066573	-0.89031	-0.00057009	0.14936	9.564E-05	640.3209331445372	56.539	1.1195	56.52	56.267	57.386	-0.019081					66	40	2	0	0	0	0.11865	1	13566	13566		43.982	29.144	1	671460			61056	586	35047	35048	74597	74597					0.00030567820294891135
YYPKTNALYF	10	Unmodified	_YYPKTNALYF_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	640.321514	1278.62847	0.63294	0.00040529	-0.45322	-0.00029021	0.17972	0.00011508	640.3211882873801	56.303	1.0887	56.303	56.101	57.19	0	-0.10328	0.00038195	NaN	43.982	68	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476390			61057	586	35047	35048							0.00030567820294891135
YYPKYLSKI	9	Unmodified	_YYPKYLSKI_					0	0	0		nc|ENSG00000130150|Q8NHP6-2|MOSPD2;ENSG00000130150|ENST00000380492|MOSPD2	nc|ENSG00000130150|Q8NHP6-2|MOSPD2	nc|ENSG00000130150|Q8NHP6-2|MOSPD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	587.794189453125	2	587.828975	1173.6434	0.39862	0.00023432	0.22906	0.00013465	0.62768	0.00036897	587.8290972472734	43.546	0.43995	43.624	43.401	43.841	0.077518					22	15	2	0	0	0	0.24289	1	9558	9558		13.042	5.7532	1	121130			61058	3452	35048	35049	74598	74598					0.06352059688288136
YYPKYLSKI	9	Unmodified	_YYPKYLSKI_					0	0	0		nc|ENSG00000130150|Q8NHP6-2|MOSPD2;ENSG00000130150|ENST00000380492|MOSPD2	nc|ENSG00000130150|Q8NHP6-2|MOSPD2	nc|ENSG00000130150|Q8NHP6-2|MOSPD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	587.7943725585938	2	587.828975	1173.6434	0.46302	0.00027218	0.25407	0.00014935	0.71709	0.00042153	587.8288456672859	43.572	0.40897	43.656	43.327	43.736	0.083996					18	14	2	0	0	0	0.24688	1	9550	9550		14.838	3.198	1	152990			61059	3452	35048	35049	74599	74599					0.06352059688288136
YYPNPPLVL	9	Unmodified	_YYPNPPLVL_					0	0	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENSG00000178425|ENST00000319550|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2950439453125	2	538.294768	1074.57498	0.70327	0.00037856	-0.057546	-3.0977E-05	0.64572	0.00034759	538.2946906762389	74.45	2.7282	74.45	73.86	76.588	0					270	96	4	0	0	0	0.0046213	4	19062	19062;19109;19154;19200		89.427	39.494	1	6603700			61060	7056	35049	35050	74600;74601;74602;74603	74600					0.040678151084193814
YYPNPPLVL	9	Unmodified	_YYPNPPLVL_					0	0	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENSG00000178425|ENST00000319550|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2949829101562	2	538.294768	1074.57498	0.38894	0.00020937	0.252	0.00013565	0.64094	0.00034502	538.2948542069653	74.426	2.4407	74.478	73.747	76.188	0.052361					301	87	5	0	0	0	0.0046213	3	19040	19040;19094;19139		89.427	43.406	1	7582500			61061	7056	35049	35050	74604;74605;74606	74604					0.040678151084193814
YYPNPPLVL	9	Unmodified	_YYPNPPLVL_					0	0	0		nc|ENSG00000178425|Q5TFE4-2|NT5DC1;ENSG00000178425|ENST00000319550|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	nc|ENSG00000178425|Q5TFE4-2|NT5DC1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2951049804688	2	538.294768	1074.57498	0.66552	0.00035824	0.051022	2.7465E-05	0.71654	0.00038571	538.2947705871953	74.535	3.2096	74.505	72.9	76.109	-0.030663					311	116	5	0	0	0	0.0046213	4	19050	19050;19095;19139;19185		89.427	43.406	1	6916000			61062	7056	35049	35050	74607;74608;74609;74610	74607					0.040678151084193814
YYPPSQYLL	9	Unmodified	_YYPPSQYLL_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	572.2902221679688	2	572.289682	1142.56481	0.18378	0.00010517	0.66667	0.00038153	0.85045	0.0004867	572.2897731242072	69.925	1.2805	69.925	69.566	70.847	0					153	46	4	0	0	0	0.11461	2	17717	17717;17768		36.127	8.4982	1	935780			61063	4807	35050	35051	74611;74612	74611					-0.0007679261680095806
YYPPSQYLL	9	Unmodified	_YYPPSQYLL_					0	0	0		nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	nc|ENSG00000148356|Q6UWE0-2|LRSAM1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	572.2899780273438	2	572.289682	1142.56481	0.23473	0.00013434	0.70974	0.00040618	0.94448	0.00054051	572.2897709924225	69.979	1.1553	69.956	69.591	70.747	-0.022079					112	41	3	0	0	0	0.088443	1	17727	17727		39.95	8.6814	1	1015800			61064	4807	35050	35051	74613	74613					-0.0007679261680095806
YYPRKSLHF	9	Unmodified	_YYPRKSLHF_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;nc|ENSG00000053900|Q9UJX5-2|ANAPC4;ENST00000505842.5_1_4:25404608-25415394:+|nuORF	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	404.1906433105469	3	404.217102	1209.62948	-0.11037	-4.4613E-05	-0.3988	-0.0001612	-0.50917	-0.00020581	404.21716505396193	30.757	0.78342	30.757	30.448	31.231	0					41	27	2	0	0	0	0.25123	1	5653	5653		12.241	3.2644	1	165050			61065	681	35051	35052	74614	74614					0.03304826979842801
YYPRKSLHF	9	Unmodified	_YYPRKSLHF_					0	0	0		ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4;nc|ENSG00000053900|Q9UJX5-2|ANAPC4;ENST00000505842.5_1_4:25404608-25415394:+|nuORF	ENSG00000053900|ENST00000315368|ANAPC4	ENSG00000053900|ENST00000315368|ANAPC4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	404.1903381347656	3	404.217102	1209.62948	-0.20718	-8.3746E-05	0.13126	5.3059E-05	-0.075917	-3.0687E-05	404.21731559447625	30.778	0.70972	30.806	30.382	31.091	0.027946					57	24	4	0	0	0	0.23749	1	5710	5710		20.415	6.1964	1	181050			61066	681	35051	35052	74615	74615					0.03304826979842801
YYPRVEYGF	9	Unmodified	_YYPRVEYGF_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	597.2850341796875	2	597.284931	1192.55531	0.44109	0.00026346	0.13051	7.7949E-05	0.5716	0.00034141	597.284796322666	55.486	0.98251	55.486	55.119	56.101	0					110	35	4	0	0	0	0.0042138	5	13276	13181;13223;13276;13324;13393		92.653	62.017	1	9030300			61067	8441	35052	35053	74616;74617;74618;74619;74620	74618					-0.033265609023374054
YYPRVEYGF	9	Unmodified	_YYPRVEYGF_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	597.28515625	2	597.284931	1192.55531	0.71183	0.00042517	-0.0013725	-8.1978E-07	0.71046	0.00042435	597.284681132401	55.372	0.96428	55.443	55.113	56.077	0.070889					125	35	5	0	0	0	0.0054984	5	13241	13147;13192;13241;13285;13337		86.332	63.596	1	8828300			61068	8441	35052	35053	74621;74622;74623;74624;74625	74623					-0.033265609023374054
YYPRVEYGF	9	Unmodified	_YYPRVEYGF_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.2850952148438	2	597.284931	1192.55531	0.56501	0.00033747	0.15065	8.9983E-05	0.71566	0.00042746	597.2847901238044	55.63	1.5197	55.611	55.29	56.809	-0.019077					142	55	5	0	0	0	0.0037449	4	13289	13239;13289;13334;13386		96.367	68.197	1	8850700			61069	8441	35052	35053	74626;74627;74628;74629	74627					-0.033265609023374054
YYPSFGPVF	9	Unmodified	_YYPSFGPVF_					0	0	0			REV__ENSG00000140836|ENST00000268489|ZFHX3	REV__ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7582397460938	2	538.758018	1075.50148	0.39309	0.00021178	0.0087706	4.7252E-06	0.40186	0.0002165	538.7578485780358	92.978	0.43381	92.978	92.79	93.224	0					64	36	2	0	0	0	0.30166	1	24774	24774		8.5933	0.68312	1	106940	+		61070	16053	35053	35054	74630	74630					-0.033247333340341356
YYPVVPGKYVV	11	Unmodified	_YYPVVPGKYVV_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	642.3543090820312	2	642.355357	1282.69616	0.45497	0.00029225	0.082914	5.326E-05	0.53789	0.00034551	642.3548697993051	58.678	0.6386	58.678	58.468	59.107	0					46	21	3	0	0	0	0.10264	1	14271	14271		39.95	30.567	1	436490			61071	3377	35054	35055	74631	74631					0.06612017751081112
YYPVVPGKYVV	11	Unmodified	_YYPVVPGKYVV_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	642.3543090820312	2	642.355357	1282.69616	0.52401	0.0003366	-0.59955	-0.00038512	-0.075537	-4.8521E-05	642.3550531811877	58.515	0.50916	58.606	58.474	58.983	0.091301					30	17	2	0	0	0	0.10264	1	14193	14193		39.95	29.876	1	519530			61072	3377	35054	35055	74632	74632					0.06612017751081112
YYPVVPGKYVV	11	Unmodified	_YYPVVPGKYVV_					0	0	0		nc|ENSG00000128591|Q14315-2|FLNC;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	nc|ENSG00000128591|Q14315-2|FLNC	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	642.3551635742188	2	642.355357	1282.69616	0.65378	0.00041996	-0.41434	-0.00026615	0.23944	0.00015381	642.3547609472994	58.724	0.53482	58.71	58.47	59.005	-0.014267					42	18	3	0	0	0	0.076087	1	14243	14243		45.7	38.091	1	605520			61073	3377	35054	35055	74633	74633					0.06612017751081112
YYPYVYYKI	9	Unmodified	_YYPYVYYKI_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	636.3208618164062	2	636.320983	1270.62741	0.37538	0.00023886	-0.051065	-3.2494E-05	0.32431	0.00020637	636.3208755638288	62.28	0.98476	62.28	61.971	62.956	0					74	36	3	0	0	0	0.0085732	2	15345	15345;15393		81.613	62.251	1	672970			61074	5159	35055	35056	74634;74635	74634					0.0029235345136839896
YYPYVYYKI	9	Unmodified	_YYPYVYYKI_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	636.3207397460938	2	636.320983	1270.62741	0.51662	0.00032874	-0.040857	-2.5998E-05	0.47577	0.00030274	636.3207974404027	62.211	0.82496	62.308	62.03	62.855	0.096985					65	29	3	0	0	0	0.0085732	2	15361	15312;15361		81.613	71.539	1	714780			61075	5159	35055	35056	74636;74637	74637					0.0029235345136839896
YYPYVYYKI	9	Unmodified	_YYPYVYYKI_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	636.3211059570312	2	636.320983	1270.62741	0.63879	0.00040647	-0.29891	-0.0001902	0.33988	0.00021627	636.3206470813282	62.31	0.85315	62.302	61.979	62.832	-0.0085526					74	31	3	0	0	0	0.0085732	2	15355	15355;15419		81.613	71.539	1	930310			61076	5159	35055	35056	74638;74639	74638					0.0029235345136839896
YYQFFGLEE	9	Unmodified	_YYQFFGLEE_					0	0	0			REV__ENST00000446144.2_1_15:20773467-20778061:+|nuORF	REV__ENST00000446144.2_1_15:20773467-20778061:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.2704467773438	2	598.268947	1194.52334	1.1234	0.00067212	1.2803	0.00076598	2.4038	0.0014381	598.2693160220288	50.404	0.94173	50.449	49.85	50.792	0.044891					84	25	5	0	0	0	0.23007	2	11661	11661;11704		19.257	1.9411	1	1647600	+		61077	16631	35056	35057	74640;74641	74640					-0.06613973376124704
YYQHIVTTL	9	Unmodified	_YYQHIVTTL_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	569.301025390625	2	569.300581	1136.58661	0.50553	0.0002878	0.17798	0.00010132	0.68351	0.00038912	569.3005645205394	47.803	1.1682	47.803	47.468	48.636	0					82	41	4	0	0	0	0.0016361	2	10866	10866;10921		114.65	78.143	1	6224800			61078	2696	35057	35058	74642;74643	74642					0.023780121317713565
YYQHIVTTL	9	Unmodified	_YYQHIVTTL_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	569.3005981445312	2	569.300581	1136.58661	0.67038	0.00038165	-0.027138	-1.545E-05	0.64324	0.0003662	569.3004509307917	47.727	1.3707	47.775	47.4	48.771	0.04752					98	50	4	0	0	0	0.00070271	2	10886	10831;10886		126.57	86.609	1	5875400			61079	2696	35057	35058	74644;74645	74645					0.023780121317713565
YYQHIVTTL	9	Unmodified	_YYQHIVTTL_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	569.300537109375	2	569.300581	1136.58661	0.52268	0.00029756	0.11874	6.7596E-05	0.64141	0.00036516	569.3005067954973	47.702	1.3202	47.746	47.401	48.721	0.043324					115	49	4	0	0	0	0.0016361	2	10868	10823;10868		114.65	84.013	1	6147600			61080	2696	35057	35058	74646;74647	74647					0.023780121317713565
YYQHYYFFFYI	11	Unmodified	_YYQHYYFFFYI_					0	0	0		ENST00000510376.1_1_5:176332285-176333139:-|nuORF	ENST00000510376.1_1_5:176332285-176333139:-|nuORF	ENST00000510376.1_1_5:176332285-176333139:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	551.7871704101562	3	551.918611	1652.734	0.19746	0.00010898	-1.1746	-0.00064828	-0.97713	-0.0005393	552.2528856294034	15.545	0.58215	15.435	15.204	15.786	-0.10981					27	19	2	0	0	0	0.33351	1	1064	1064		0.094841	0.094841	1	36413			61081	11371	35058	35059	74648	74648					-0.06625516054123182
YYQLHRAF	8	Unmodified	_YYQLHRAF_					0	0	0		ENSG00000166828|ENST00000300061|SCNN1G	ENSG00000166828|ENST00000300061|SCNN1G	ENSG00000166828|ENST00000300061|SCNN1G	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	549.2979125976562	2	549.279983	1096.54541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.734	1	74.787	74.287	75.287	0.052361								0	0	0	0.33625	1	19157	19157		20.871	1.6142	1				61082	6117	35059	35060	74649	74649					0.0010029588295310532
YYQNYFEKL	9	Unmodified	_YYQNYFEKL_					0	0	0		nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	634.3035278320312	2	634.303321	1266.59209	0.43425	0.00027544	-0.3233	-0.00020507	0.11095	7.0374E-05	634.3031362644145	56.824	1.4552	56.824	56.471	57.927	0					153	53	6	0	0	0	1.3736E-17	5	13668	13624;13668;13713;13763;13812		225.01	175.45	1	10227000			61083	6129	35060	35061	74650;74651;74652;74653;74654	74651					-0.030543090764240333
YYQNYFEKL	9	Unmodified	_YYQNYFEKL_					0	0	0		nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	634.3193359375	2	634.303321	1266.59209	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.628	1	59.723	59.223	60.223	0.095093								0	0	0	0.21673	1	14526	14526		17.113	10.907	1				61084	6129	35060	35061	74655	74655					-0.030543090764240333
YYQNYFEKL	9	Unmodified	_YYQNYFEKL_					0	0	0		nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	634.3034057617188	2	634.303321	1266.59209	0.47737	0.0003028	-0.31531	-0.0002	0.16206	0.00010279	634.3031258836352	57.126	1.6554	57.107	56.809	58.465	-0.019077					161	60	5	0	0	0	2.4074E-11	5	13766	13720;13766;13811;13861;13920		195.45	145.9	1	12376000			61085	6129	35060	35061	74656;74657;74658;74659;74660	74657					-0.030543090764240333
YYQPLVHLL	9	Unmodified	_YYQPLVHLL_					0	0	0		nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4;ENST00000523568.1_7:102228019-102246337:-|nuORF;ENST00000427076.5_1_7:43992756-44009363:-|nuORF	nc|ENSG00000105808|O43374-2|RASA4	nc|ENSG00000105808|O43374-2|RASA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	573.3213500976562	2	573.321317	1144.62808	0.21598	0.00012383	-3.4379	-0.001971	-3.2219	-0.0018472	573.3197710848852	67.375	1.3763	67.375	66.825	68.202	0					121	48	3	0	0	0	0.0036555	1	16923	16923		97.075	62.972	1	1137800			61086	2026	35061	35062	74661	74661					0.061551928911057985
YYQPLVHLL	9	Unmodified	_YYQPLVHLL_					0	0	0		nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4;ENST00000523568.1_7:102228019-102246337:-|nuORF;ENST00000427076.5_1_7:43992756-44009363:-|nuORF	nc|ENSG00000105808|O43374-2|RASA4	nc|ENSG00000105808|O43374-2|RASA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	573.3213500976562	2	573.321317	1144.62808	0.34014	0.00019501	-2.2866	-0.0013109	-1.9464	-0.0011159	573.3210768889941	67.254	1.2069	67.332	66.986	68.193	0.078041					99	42	3	0	0	0	0.0036555	2	16877	16877;16927		97.075	62.972	1	1133000			61087	2026	35061	35062	74662;74663	74662					0.061551928911057985
YYQPLVHLL	9	Unmodified	_YYQPLVHLL_					0	0	0		nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4;ENST00000523568.1_7:102228019-102246337:-|nuORF;ENST00000427076.5_1_7:43992756-44009363:-|nuORF	nc|ENSG00000105808|O43374-2|RASA4	nc|ENSG00000105808|O43374-2|RASA4	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	573.3212890625	2	573.321317	1144.62808	0.11334	6.4978E-05	-2.0761	-0.0011903	-1.9628	-0.0011253	573.3213356944301	67.345	1.0733	67.329	66.893	67.966	-0.016296					83	36	3	0	0	0	0.0036555	1	16914	16914		97.075	62.972	1	1172300			61088	2026	35061	35062	74664	74664					0.061551928911057985
YYQQYQNY	8	Unmodified	_YYQQYQNY_					0	0	0		nc|ENSG00000180098|Q9NX07-2|TRNAU1AP;ENST00000491577.5_1_1:28887839-28904145:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF;ENSG00000180098|ENST00000373830|TRNAU1AP	nc|ENSG00000180098|Q9NX07-2|TRNAU1AP	nc|ENSG00000180098|Q9NX07-2|TRNAU1AP	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	585.7866821289062	2	585.248546	1168.48254	0.14649	8.5735E-05	-4.2621	-0.0024944	-4.1156	-0.0024087	585.2455993303519	61.463	0.36406	61.463	61.363	61.727	0					20	13	2	0	0	0	0.34185	1	15120	15120		10.183	0	1	172090			61089	7165	35062	35063	74665	74665					-0.09496314695752517
YYQSSVQYL	9	Unmodified	_YYQSSVQYL_					0	0	0		nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	575.7742919921875	2	575.774396	1149.53424	0.15506	8.9278E-05	0.42591	0.00024523	0.58096	0.0003345	575.7744652996433	55.388	0.73568	55.388	55.119	55.854	0					71	26	4	0	0	0	0.00010125	3	13198	13198;13248;13303		140.63	96.775	1	2570300			61090	5879	35063	35064	74666;74667;74668	74666					-0.03454571001839213
YYQSSVQYL	9	Unmodified	_YYQSSVQYL_					0	0	0		nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	575.7747802734375	2	575.774396	1149.53424	0.55299	0.0003184	0.02575	1.4826E-05	0.57874	0.00033322	575.7742761430625	55.342	0.84591	55.413	55.112	55.958	0.070885					83	31	4	0	0	0	2.5511E-05	3	13216	13165;13216;13273		152.89	109.03	1	2763300			61091	5879	35063	35064	74669;74670;74671	74670					-0.03454571001839213
YYQSSVQYL	9	Unmodified	_YYQSSVQYL_					0	0	0		nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	575.7745971679688	2	575.774396	1149.53424	0.28469	0.00016392	0.25011	0.00014401	0.5348	0.00030793	575.7744466977665	55.577	0.81741	55.558	55.29	56.107	-0.019081					73	29	4	0	0	0	2.5511E-05	2	13291	13244;13291		152.89	109.03	1	3078000			61092	5879	35063	35064	74672;74673	74673					-0.03454571001839213
YYQVLNFAM	9	Unmodified	_YYQVLNFAM_					0	0	0		ENSG00000166562|ENST00000587834|SEC11C;ENST00000585864.1_1_18:56807180-56819918:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.7760620117188	2	574.775885	1147.53722	0.14256	8.1941E-05	0.57153	0.0003285	0.71409	0.00041044	574.7758125082331	24.26	0.54606	24.26	24.029	24.575	0					31	18	2	0	0	0	0.25706	1	3679	3679		6.7232	0.09279	1	149960			61093	6096	35064	35065	74674	74674					-0.030650191486984113
YYQVLNFAM	9	Unmodified	_YYQVLNFAM_					0	0	0		ENSG00000166562|ENST00000587834|SEC11C;ENST00000585864.1_1_18:56807180-56819918:+|nuORF	ENSG00000166562|ENST00000587834|SEC11C	ENSG00000166562|ENST00000587834|SEC11C	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.7760620117188	2	574.775885	1147.53722	0.36145	0.00020775	-0.099269	-5.7057E-05	0.26218	0.0001507	574.7755455926143	24.428	0.55628	24.355	24.055	24.612	-0.072559					32	18	2	0	0	0	0.31417	1	3780	3780		6.7232	0.99131	1	184670			61094	6096	35064	35065	74675	74675					-0.030650191486984113
YYQYRTIE	8	Unmodified	_YYQYRTIE_					0	0	0			REV__ENST00000554628.5_1_14:88959357-89016761:-|nuORF	REV__ENST00000554628.5_1_14:88959357-89016761:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	568.2616577148438	2	568.274564	1134.53457	0.13777	7.829E-05	-0.49986	-0.00028406	-0.36209	-0.00020577	568.2740980735051	46.561	0.41025	46.561	46.35	46.76	0					34	14	3	0	0	0	0.39956	2	10494	10494;10546		19.439	5.5329	1	897300	+		61095	13737	35065	35066	74676;74677	74676					-0.0273115128200061
YYQYRTIE	8	Unmodified	_YYQYRTIE_					0	0	0			REV__ENST00000554628.5_1_14:88959357-89016761:-|nuORF	REV__ENST00000554628.5_1_14:88959357-89016761:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	568.26171875	2	568.274564	1134.53457	0.32731	0.000186	-0.92865	-0.00052773	-0.60134	-0.00034173	568.2739718334861	46.282	0.50664	46.342	46.18	46.686	0.059837					38	18	3	0	0	0	0.42758	1	10473	10473		13.508	1.2672	1	903350	+		61096	13737	35065	35066	74678	74678					-0.0273115128200061
YYRAPELIF	9	Unmodified	_YYRAPELIF_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B;ENSG00000105723|ENST00000222330|GSK3A	ENSG00000082701|ENST00000264235|GSK3B;ENSG00000105723|ENST00000222330|GSK3A	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.3103637695312	2	586.310949	1170.60735	0.43143	0.00025295	-0.23441	-0.00013744	0.19703	0.00011552	586.3107354178326	64.169	0.73351	64.261	64.012	64.746	0.09288					48	26	3	0	0	0	0.15763	1	15952	15952		29.841	1.3537	1	401350			61097	1208;2017	35066	35067	74679	74679					0.02886602511421188
YYRAPELIF	9	Unmodified	_YYRAPELIF_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B;ENSG00000105723|ENST00000222330|GSK3A	ENSG00000082701|ENST00000264235|GSK3B;ENSG00000105723|ENST00000222330|GSK3A	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	586.310949	1170.60735	0.59111	0.00034657	-0.25469	-0.00014933	0.33641	0.00019724	586.3105888930849	64.291	0.51019	64.291	64.053	64.563	0	0.0091495	-7.0591E-05	NaN	29.841	52	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400040			61098	1208;2017	35066	35067							0.02886602511421188
YYRAPELIF	9	Unmodified	_YYRAPELIF_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B;ENSG00000105723|ENST00000222330|GSK3A	ENSG00000082701|ENST00000264235|GSK3B;ENSG00000105723|ENST00000222330|GSK3A	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	586.310949	1170.60735	0.5642	0.0003308	-0.11986	-7.0274E-05	0.44434	0.00026052	586.3107949273508	64.302	0.53395	64.293	64.074	64.608	-0.0095291	0.011149	8.7521E-05	NaN	29.841	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484520			61099	1208;2017	35066	35067							0.02886602511421188
YYRAWQEY	8	Unmodified	_YYRAWQEY_					0	0	0		ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3436279296875	2	589.766906	1177.51926	0.0084038	4.9563E-06	2.6942	0.0015889	2.7026	0.0015939	590.2712340726112	98.798	0.71303	98.798	98.376	99.089	0					109	82	2	0	0	0	0.34319	1	26332	26332		5.7604	1.816	1	108490			61100	795	35067	35068	74680	74680					-0.06240018079188303
YYRAWQEY	8	Unmodified	_YYRAWQEY_					0	0	0		ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	ENSG00000064703|ENST00000369702|DDX20	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	589.341796875	2	589.766906	1177.51926	0.32171	0.00018973	-0.26165	-0.00015431	0.060058	3.542E-05	589.7642178294514	113.44	0.051033	113.46	113.42	113.47	0.014824					8	5	2	0	0	0	0.3439	1	29510	29510		2.8892	0	1	19306			61101	795	35067	35068	74681	74681					-0.06240018079188303
YYRCWIEF	8	Unmodified	_YYRCWIEF_					0	0	0			REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	REV__nc|ENSG00000168014|Q4AC94-2|C2CD3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.2667236328125	2	590.268227	1178.5219	0.66028	0.00038974	-2.4204	-0.0014287	-1.7601	-0.0010389	590.266911329233	47.974	0.38183	47.974	47.823	48.205	0					15	13	2	0	0	0	0.44842	1	10952	10952		6.3541	1.1234	1	1190900	+		61102	17431	35068	35069	74682	74682					-0.060218859458700535
YYRGNYMTF	9	Oxidation (M)	_YYRGNYM(Oxidation (M))TF_		YYRGNYM(1)TF		YYRGNYM(96)TF	0	0	1		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	615.7664184570312	2	615.766049	1229.51754	0.38695	0.00023827	-0.32535	-0.00020034	0.0616	3.7931E-05	615.7658885896125	40.395	0.60828	40.395	40.132	40.74	0					46	21	3	0	0	0	0.0037772	1	8621	8621		96.111	76.749	1	554010			61103	8240	35069	35070	74683	74683		892			-0.0880339515945252
YYRGNYMTF	9	Oxidation (M)	_YYRGNYM(Oxidation (M))TF_					0	0	1		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	615.766049	1229.51754	0.39306	0.00024204	-0.45267	-0.00027874	-0.059611	-3.6706E-05	615.7658997733079	40.019	0.67185	40.112	39.83	40.502	0.09267	-0.10015	-0.00020276	NaN	96.111	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523130			61104	8240	35069	35070				892			-0.0880339515945252
YYRGNYMTF	9	Oxidation (M)	_YYRGNYM(Oxidation (M))TF_					0	0	1		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	615.766049	1229.51754	0.30998	0.00019087	-0.20508	-0.00012628	0.1049	6.4595E-05	615.7658789545198	40.03	0.66329	40.129	39.868	40.532	0.099407	-0.083042	0.00010217	NaN	96.111	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614660			61105	8240	35069	35070				892			-0.0880339515945252
YYRIVKIQM	9	Unmodified	_YYRIVKIQM_					0	0	0			REV__L1ME3G_dup11655|chr12:49354546-49354944:-|1.279855103986304|0.1807300642567456|2.82|529.0|3|1|sense	REV__L1ME3G_dup11655|chr12:49354546-49354944:-|1.279855103986304|0.1807300642567456|2.82|529.0|3|1|sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	405.9006042480469	3	405.230243	1212.6689	-1.1702	-0.00047421	-0.098204	-3.9795E-05	-1.2684	-0.00051401	405.23022822246975	35.099	0.40965	35.099	34.892	35.302	0					19	14	2	0	0	0	0.25949	1	7015	7015		4.897	0.36815	1	85531	+		61106	22797	35070	35071	74684	74684					0.0710721093905704
YYRKQLSYF	9	Unmodified	_YYRKQLSYF_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	423.2205810546875	3	423.220513	1266.63971	-0.18472	-7.8176E-05	-0.24675	-0.00010443	-0.43146	-0.0001826	423.2204170849787	38.948	0.60577	39.04	38.836	39.442	0.09267					31	21	2	0	0	0	0.25714	1	8183	8183		15.248	5.7045	1	281670			61107	1866	35071	35072	74685	74685					0.01705389914445732
YYRKQLSYF	9	Unmodified	_YYRKQLSYF_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	423.220513	1266.63971	-0.41643	-0.00017624	-0.13884	-5.8761E-05	-0.55527	-0.000235	423.22050654128697	39.28	0.52204	39.28	38.958	39.48	0	0.12443	0.00015652	NaN	15.248	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238700			61108	1866	35071	35072							0.01705389914445732
YYRKQLSYF	9	Unmodified	_YYRKQLSYF_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	423.220513	1266.63971	0.13394	5.6686E-05	-0.41315	-0.00017486	-0.27921	-0.00011817	423.2203533850499	39.047	0.61366	39.147	38.81	39.424	0.099407	-0.0091459	-0.00019176	NaN	15.248	26	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311410			61109	1866	35071	35072							0.01705389914445732
YYRPLHDEY	9	Unmodified	_YYRPLHDEY_					0	0	0		ENSG00000105339|ENST00000519811|DENND3;DENND3|p.F233Sfs*35|1|0.08|ENSG00000105339|chr8:141151699-141151700|-/AGTGG|frameshift_variant;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENST00000518198.1_1_8:142138775-142151424:+|nuORF;nc|ENSG00000105339|A2RUS2-4|DENND3	ENSG00000105339|ENST00000519811|DENND3	ENSG00000105339|ENST00000519811|DENND3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	419.1963195800781	3	419.196256	1254.56694	0.023687	9.9295E-06	0.64859	0.00027189	0.67228	0.00028182	419.1963926453054	32.835	0.45533	32.835	32.556	33.011	0					38	15	3	0	0	0	0.2777	1	6332	6332		12.175	5.073	1	259710			61110	1967	35072	35073	74686	74686					-0.05016363879008168
YYRPLHDEY	9	Unmodified	_YYRPLHDEY_					0	0	0		ENSG00000105339|ENST00000519811|DENND3;DENND3|p.F233Sfs*35|1|0.08|ENSG00000105339|chr8:141151699-141151700|-/AGTGG|frameshift_variant;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENST00000518198.1_1_8:142138775-142151424:+|nuORF;nc|ENSG00000105339|A2RUS2-4|DENND3	ENSG00000105339|ENST00000519811|DENND3	ENSG00000105339|ENST00000519811|DENND3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		3	419.196256	1254.56694	0.22163	9.2905E-05	0.39935	0.00016741	0.62098	0.00026031	419.53080615718443	32.661	0.46659	32.716	32.506	32.973	0.055309	-0.073567	5.1635E-05	NaN	12.175	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350210			61111	1967	35072	35073							-0.05016363879008168
YYRPLHDEY	9	Unmodified	_YYRPLHDEY_					0	0	0		ENSG00000105339|ENST00000519811|DENND3;DENND3|p.F233Sfs*35|1|0.08|ENSG00000105339|chr8:141151699-141151700|-/AGTGG|frameshift_variant;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENST00000518198.1_1_8:142138775-142151424:+|nuORF;nc|ENSG00000105339|A2RUS2-4|DENND3	ENSG00000105339|ENST00000519811|DENND3	ENSG00000105339|ENST00000519811|DENND3	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	419.196256	1254.56694	0.11483	4.8137E-05	0.1599	6.7028E-05	0.27473	0.00011516	419.1963637757995	32.763	0.56675	32.818	32.553	33.119	0.054371	0.028056	-0.0002495	NaN	12.175	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332690			61112	1967	35072	35073							-0.05016363879008168
YYRPTYLYP	9	Unmodified	_YYRPTYLYP_					0	0	0			REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.3209228515625	2	618.308406	1234.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.796	1	70.796	70.296	71.296	0								0	0	0	0.2489	1	17961	17961		6.7232	0.51738	1		+		61113	15664	35073	35074	74687	74687					-0.00565701351183634
YYRPTYLYP	9	Unmodified	_YYRPTYLYP_					0	0	0			REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	618.3209228515625	2	618.308406	1234.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.963	1	70.963	70.463	71.463	0								0	0	0	0.2489	1	18013	18013		6.7232	0.51738	1		+		61114	15664	35073	35074	74688	74688					-0.00565701351183634
YYRPTYLYP	9	Unmodified	_YYRPTYLYP_					0	0	0			REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	618.3211669921875	2	618.308406	1234.60226	0.14086	8.7096E-05	-0.75162	-0.00046473	-0.61076	-0.00037764	618.3082423247997	70.808	0.21717	70.869	70.8	71.017	0.060783					10	7	2	0	0	0	0.31417	1	17954	17954		6.7232	0.51738	1	132380	+		61115	15664	35073	35074	74689	74689					-0.00565701351183634
YYRPTYLYP	9	Unmodified	_YYRPTYLYP_					0	0	0			REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	REV__nc|ENSG00000134313|Q9ULH0-4|KIDINS220	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.3209228515625	2	618.308406	1234.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.992	1	70.967	70.467	71.467	-0.024872								0	0	0	0.2489	1	18009	18009		6.7232	1.4263	1		+		61116	15664	35073	35074	74690	74690					-0.00565701351183634
YYRPVNTVPS	10	Unmodified	_YYRPVNTVPS_					0	0	0		ENSG00000187533|ENST00000344526|PRR27	ENSG00000187533|ENST00000344526|PRR27	ENSG00000187533|ENST00000344526|PRR27	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	598.293212890625	2	598.308938	1194.60332	0.34773	0.00020805	-0.090456	-5.4121E-05	0.25727	0.00015393	598.3089679792768	69.587	0.73562	69.653	69.366	70.101	0.066048					38	25	2	0	0	0	0.30958	1	17518	17518		19.257	7.0163	1	882190			61117	7686	35074	35075	74691	74691					0.013805130177388492
YYRQRLRYQQH	11	Unmodified	_YYRQRLRYQQH_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	537.2688598632812	3	537.614807	1609.82259	0.841	0.00045213	0.27403	0.00014732	1.115	0.00059946	537.9492074965527	50.166	0.64508	50.211	49.957	50.602	0.044891					56	23	4	0	0	0	0.33351	1	11721	11721		0.094841	0	1	865820			61118	1258	35075	35076	74692	74692					0.04207337028947222
YYRSFPTYF	9	Unmodified	_YYRSFPTYF_					0	0	0			REV__ENSG00000284526|ENST00000640006|unknown	REV__ENSG00000284526|ENST00000640006|unknown	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	622.8934936523438	2	622.292756	1242.57096	0.40199	0.00025016	0.26751	0.00016647	0.66951	0.00041663	622.2930267977421	72.94	0.43714	72.94	72.696	73.133	0					27	15	2	0	0	0	0.24688	1	18586	18586		14.838	0.93222	1	189170	+		61119	19375	35076	35077	74693	74693					-0.04062274385296405
YYRTVQPF	8	Unmodified	_YYRTVQPF_					0	0	0		ENST00000297591.9_1_8:95531371-95531449:-|nuORF	ENST00000297591.9_1_8:95531371-95531449:-|nuORF	ENST00000297591.9_1_8:95531371-95531449:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2953491210938	2	537.274367	1072.53418	0.46076	0.00024756	-0.12676	-6.8104E-05	0.33401	0.00017945	537.2744027383121	63.2	0.55408	63.296	62.985	63.539	0.095722					42	19	3	0	0	0	0.421	1	15687	15687		15.768	1.8622	1	576680			61120	9200	35077	35078	74694	74694					0.0008147378882767953
YYRTVQPF	8	Unmodified	_YYRTVQPF_					0	0	0		ENST00000297591.9_1_8:95531371-95531449:-|nuORF	ENST00000297591.9_1_8:95531371-95531449:-|nuORF	ENST00000297591.9_1_8:95531371-95531449:-|nuORF	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	537.274367	1072.53418	0.52462	0.00028186	0.031523	1.6937E-05	0.55614	0.0002988	537.2745792502482	63.284	0.48856	63.284	63.068	63.557	0	-0.016761	2.6293E-05	NaN	15.768	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	579960			61121	9200	35077	35078							0.0008147378882767953
YYRVKPQKL	9	Unmodified	_YYRVKPQKL_					0	0	0			REV__ENSG00000173572|ENST00000342929|NLRP13	REV__ENSG00000173572|ENST00000342929|NLRP13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.8557739257812	2	597.853316	1193.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.829	1	96.823	96.323	97.323	-0.0055466								0	0	0	0.26334	1	25904	25904		2.0598	0.21551	1		+		61122	17791	35078	35079	74695	74695					0.10297973048045606
YYSDKIQIF	9	Unmodified	_YYSDKIQIF_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	589.3429565429688	2	588.800414	1175.58628	0.35045	0.00020635	-0.89246	-0.00052548	-0.54201	-0.00031914	588.8002173942498	80.991	0.15632	80.991	80.904	81.06	0					13	8	2	0	0	0	0.25526	1	21078	21078		7.9102	3.5809	1	69348			61123	8296	35079	35080	74696	74696					0.005505924119006522
YYSGLFVLI	9	Unmodified	_YYSGLFVLI_					0	0	0			REV__ENSG00000154370|ENST00000284551|TRIM11	REV__ENSG00000154370|ENST00000284551|TRIM11	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	537.7974853515625	2	537.797143	1073.57973	0.28158	0.00015143	-1.7811	-0.00095787	-1.4995	-0.00080643	537.797299282431	95.231	1.1055	95.231	94.623	95.728	0					221	103	3	0	0	0	0.10075	2	25373	25373;25473		38.151	6.2061	1	205440	+		61124	16665	35080	35081	74697;74698	74697					0.04588699251212347
YYSHLEGARF	10	Unmodified	_YYSHLEGARF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	414.8681640625	3	414.86825	1241.58292	0.094848	3.935E-05	-0.11501	-4.7714E-05	-0.020162	-8.3645E-06	414.868204236706	37.862	1.4798	37.862	37.532	39.012	0					161	52	5	0	0	0	0.066197	3	7817	7817;7864;7916		55.467	40.018	1	5210400			61125	4432	35081	35082	74699;74700;74701	74699					-0.028206576420870988
YYSHLEGARF	10	Unmodified	_YYSHLEGARF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	621.7987670898438	2	621.798737	1241.58292	0.44797	0.00027855	-0.20222	-0.00012574	0.24575	0.00015281	621.7986091758017	37.854	0.73209	37.854	37.587	38.32	0					65	25	4	0	0	0	0.0013725	1	7827	7827		143.91	124.55	1	1040300			61126	4432	35081	35082	74702	74702					-0.028206576420870988
YYSHLEGARF	10	Unmodified	_YYSHLEGARF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	414.8683166503906	3	414.86825	1241.58292	0.34578	0.00014345	-0.43767	-0.00018157	-0.091889	-3.8122E-05	414.8680806718245	37.734	1.4704	37.825	37.501	38.972	0.090881					158	53	5	0	0	0	0.08115	2	7821	7774;7821		52.193	40.018	1	5277400			61127	4432	35081	35082	74703;74704	74704					-0.028206576420870988
YYSHLEGARF	10	Unmodified	_YYSHLEGARF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	621.798828125	2	621.798737	1241.58292	0.14629	9.0965E-05	0.08755	5.4439E-05	0.23384	0.0001454	621.798740189113	37.719	0.81782	37.81	37.555	38.373	0.090881					73	29	4	0	0	0	0.0024771	1	7791	7791		132.38	111.97	1	957800			61128	4432	35081	35082	74705	74705					-0.028206576420870988
YYSHLEGARF	10	Unmodified	_YYSHLEGARF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	414.868408203125	3	414.86825	1241.58292	0.21412	8.8831E-05	-0.21658	-8.985E-05	-0.0024565	-1.0191E-06	414.8681507126641	37.69	1.5628	37.788	37.452	39.015	0.097527					171	56	5	0	0	0	0.097738	2	7801	7756;7801		48.561	37.158	1	4878200			61129	4432	35081	35082	74706;74707	74707					-0.028206576420870988
YYSHLEGARF	10	Unmodified	_YYSHLEGARF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	621.7989501953125	2	621.798737	1241.58292	0.17819	0.0001108	0.072395	4.5015E-05	0.25058	0.00015581	621.7987494309787	37.675	0.73725	37.772	37.529	38.266	0.097527					57	26	3	0	0	0	0.0016549	2	7813	7765;7813		135.86	121.96	1	896430			61130	4432	35081	35082	74708;74709	74709					-0.028206576420870988
YYSLIKMVF	9	Oxidation (M)	_YYSLIKM(Oxidation (M))VF_		YYSLIKM(1)VF		YYSLIKM(96)VF	0	0	1		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	590.3096923828125	2	590.309561	1178.60457	0.6187	0.00036522	-0.10021	-5.9155E-05	0.51849	0.00030607	590.3093596683817	66.082	0.64235	66.082	65.871	66.514	0					51	22	3	0	0	0	0.0037772	1	16553	16553		96.111	77.976	1	697500			61131	6752	35082	35083	74710	74710		771			0.022410110622786306
YYSLIKMVF	9	Oxidation (M)	_YYSLIKM(Oxidation (M))VF_		YYSLIKM(1)VF		YYSLIKM(86)VF	0	0	1		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	590.3094482421875	2	590.309561	1178.60457	0.62695	0.00037009	-0.41803	-0.00024676	0.20893	0.00012333	590.3092164669498	65.947	0.63481	66.036	65.811	66.446	0.088783					62	22	4	0	0	0	0.0059482	1	16512	16512		85.642	85.642	1	789550			61132	6752	35082	35083	74711	74711		771			0.022410110622786306
YYSLIKMVF	9	Oxidation (M)	_YYSLIKM(Oxidation (M))VF_		YYSLIKM(1)VF		YYSLIKM(110)VF	0	0	1		nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.S4116Ifs*7|1|0.28|ENSG00000173821|chr17:80369783-80369784|-/A|frameshift_variant	nc|ENSG00000173821|Q63HN8|RNF213	nc|ENSG00000173821|Q63HN8|RNF213	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	590.3096313476562	2	590.309561	1178.60457	0.45822	0.00027049	-0.12946	-7.6421E-05	0.32876	0.00019407	590.3093444733822	66.076	0.63673	66.062	65.797	66.433	-0.013588					60	22	4	0	0	0	0.0016361	1	16510	16510		114.65	94.235	1	752210			61133	6752	35082	35083	74712	74712		771			0.022410110622786306
YYSLLQENL	9	Unmodified	_YYSLLQENL_					0	0	0		nc|ENSG00000113328|P51959-2|CCNG1;ENSG00000113328|ENST00000340828|CCNG1	nc|ENSG00000113328|P51959-2|CCNG1	nc|ENSG00000113328|P51959-2|CCNG1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7893676757812	2	571.790047	1141.56554	0.27133	0.00015514	-1.7234	-0.00098545	-1.4521	-0.0008303	571.7897106499646	71.2	0.67381	71.2	70.847	71.521	0					35	23	2	0	0	0	0.0040516	1	18083	18083		93.938	36.216	1	736050			61134	2494	35083	35084	74713	74713					0.00042002032250820776
YYSLYDPCLV	10	Unmodified	_YYSLYDPCLV_					0	0	0			REV__ENSG00000196859|ENST00000355612|KRT39	REV__ENSG00000196859|ENST00000355612|KRT39	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	618.2852783203125	2	618.286282	1234.55801	0.091805	5.6762E-05	-1.4599	-0.00090265	-1.3681	-0.00084589	618.2850419756514	57.671	0.98926	57.653	57.229	58.218	-0.0172					111	36	6	0	0	0	0.36002	1	13953	13953		10.824	3.5347	1	2034100	+	+	61135	13273	35084	35085	74714	74714					-0.04988473559683371
YYSNLHQTF	9	Unmodified	_YYSNLHQTF_					0	0	0		ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	ENSG00000171806|ENST00000310392|METTL18	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.80908203125	2	586.772188	1171.52982	0.16384	9.6134E-05	1.9717	0.0011569	2.1355	0.0012531	586.7736006289828	41.047	0.35389	41.143	40.96	41.313	0.096622					19	12	2	0	0	0	0.14306	1	8814	8814		32.037	10.291	1	173740			61136	6577	35085	35086	74715	74715					-0.04908035424773516
YYSPHGHILVL	11	Unmodified	_YYSPHGHILVL_					0	0	0		nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	433.5679016113281	3	433.567912	1297.68191	0.026602	1.1534E-05	-0.12343	-5.3516E-05	-0.09683	-4.1982E-05	433.5677387246954	49.175	1.1494	49.175	48.827	49.976	0					145	41	5	0	0	0	0.012242	3	11320	11271;11320;11370		64.927	48.652	1	4078100			61137	12740	35086	35087	74716;74717;74718	74717					0.04497365322799851
YYSPHGHILVL	11	Unmodified	_YYSPHGHILVL_					0	0	0		nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8489379882812	2	649.84823	1297.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.145	1	49.145	48.645	49.645	0								0	0	0	5.1919E-06	1	11300	11300		103.75	74.667	1				61138	12740	35086	35087	74719	74719					0.04497365322799851
YYSPHGHILVL	11	Unmodified	_YYSPHGHILVL_					0	0	0		nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	649.8485107421875	2	649.84823	1297.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.292	1	49.292	48.792	49.792	0								0	0	0	0.0030884	1	11345	11345		71.922	54.809	1				61139	12740	35086	35087	74720	74720					0.04497365322799851
YYSPHGHILVL	11	Unmodified	_YYSPHGHILVL_					0	0	0		nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	433.5677490234375	3	433.567912	1297.68191	-0.043706	-1.895E-05	-0.1592	-6.9022E-05	-0.2029	-8.7972E-05	433.5677348758253	49.246	1.4997	49.291	48.961	50.461	0.044888					146	55	5	0	0	0	0.0083345	3	11292	11292;11338;11392		73.196	54.052	1	4316000			61140	12740	35086	35087	74721;74722;74723	74721					0.04497365322799851
YYSPHGHILVL	11	Unmodified	_YYSPHGHILVL_					0	0	0		nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8486938476562	2	649.84823	1297.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.169	1	49.213	48.713	49.713	0.044891								0	0	0	0.0030884	1	11307	11307		92.491	69.755	1				61141	12740	35086	35087	74724	74724					0.04497365322799851
YYSPHGHILVL	11	Unmodified	_YYSPHGHILVL_					0	0	0		nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	649.8485717773438	2	649.84823	1297.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.324	1	49.369	48.869	49.869	0.044891								0	0	0	0.0037063	1	11355	11355		88.954	66.218	1				61142	12740	35086	35087	74725	74725					0.04497365322799851
YYSPHGHILVL	11	Unmodified	_YYSPHGHILVL_					0	0	0		nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	433.5679626464844	3	433.567912	1297.68191	-0.21993	-9.5353E-05	0.034872	1.512E-05	-0.18505	-8.0233E-05	433.56784028598116	49.162	1.1221	49.194	48.878	50	0.032047					135	40	5	0	0	0	0.029905	3	11269	11269;11319;11371		59.052	42.778	1	3836900			61143	12740	35086	35087	74726;74727;74728	74726					0.04497365322799851
YYSPHGHILVL	11	Unmodified	_YYSPHGHILVL_					0	0	0		nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8486328125	2	649.84823	1297.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.097	1	49.129	48.629	49.629	0.032043								0	0	0	0.017815	1	11277	11277		85.272	62.536	1				61144	12740	35086	35087	74729	74729					0.04497365322799851
YYSPHGHILVL	11	Unmodified	_YYSPHGHILVL_					0	0	0		nc|ENSG00000144895|Q9BY44-3|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-4|EIF2A;ENSG00000144895|ENST00000460851|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	nc|ENSG00000144895|Q9BY44-3|EIF2A	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	649.8483276367188	2	649.84823	1297.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.295	1	49.327	48.827	49.827	0.032043								0	0	0	0.16247	1	11336	11336		47.749	35.508	1				61145	12740	35086	35087	74730	74730					0.04497365322799851
YYSWCKLN	8	Unmodified	_YYSWCKLN_					0	0	0		ENST00000263955.8_1_2:197001783-197001954:-|nuORF	ENST00000263955.8_1_2:197001783-197001954:-|nuORF	ENST00000263955.8_1_2:197001783-197001954:-|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8631591796875	2	538.747127	1075.4797	0.49072	0.00026437	2.5236	0.0013596	3.0143	0.001624	538.7489223403282	82.571	0.52812	82.644	82.428	82.956	0.073097					36	20	2	0	0	0	0.34167	1	21522	21522		11.64	0.81637	1	215660			61146	9019	35087	35088	74731	74731					-0.05501861354241555
YYTDIMHTL	9	Oxidation (M)	_YYTDIM(Oxidation (M))HTL_		YYTDIM(1)HTL		YYTDIM(240)HTL	0	0	1		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	586.7683715820312	2	586.768257	1171.52196	0.62537	0.00036695	-0.19994	-0.00011732	0.42543	0.00024963	586.7681370633896	47.381	0.86507	47.381	46.932	47.797	0					86	30	4	0	0	0	3.1560000000000002E-24	5	10742	10656;10700;10742;10788;10840		243.74	162.13	1	3134600			61147	7882	35088	35089	74732;74733;74734;74735;74736	74734		857			-0.056939307365382774
YYTDIMHTL	9	Oxidation (M)	_YYTDIM(Oxidation (M))HTL_		YYTDIM(1)HTL		YYTDIM(220)HTL	0	0	1		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	586.768798828125	2	586.768257	1171.52196	0.30691	0.00018009	0.29231	0.00017152	0.59923	0.00035161	586.7683726282041	47.348	0.96862	47.401	46.872	47.841	0.05257					116	35	4	0	0	0	2.6052E-17	5	10631	10631;10677;10728;10776;10829		223.6	141.99	1	3664700			61148	7882	35088	35089	74737;74738;74739;74740;74741	74737		857			-0.056939307365382774
YYTDIMHTL	9	Oxidation (M)	_YYTDIM(Oxidation (M))HTL_		YYTDIM(1)HTL		YYTDIM(240)HTL	0	0	1		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	586.7686767578125	2	586.768257	1171.52196	0.92571	0.00054318	-0.38728	-0.00022724	0.53843	0.00031593	586.7680255465763	47.324	0.9523	47.379	46.908	47.861	0.054371					114	34	4	0	0	0	3.1560000000000002E-24	4	10687	10638;10687;10735;10784		243.74	162.13	1	3880200			61149	7882	35088	35089	74742;74743;74744;74745	74743		857			-0.056939307365382774
YYTIPTGPLTF	11	Unmodified	_YYTIPTGPLTF_					0	0	0			REV__nc|ENSG00000138079|Q07837-2|SLC3A1	REV__nc|ENSG00000138079|Q07837-2|SLC3A1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	424.9139404296875	3	424.88854	1271.64379	0.26599	0.00011302	-4.1908	-0.0017806	-3.9248	-0.0016676	424.88724466563076	32.455	0.16334	32.455	32.366	32.529	0					7	5	2	0	0	0	0.33122	1	6186	6186		7.0371	0	1	37500	+		61150	15900	35089	35090	74746	74746					0.018834346174571692
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2947998046875	2	538.294768	1074.57498	0.62312	0.00033542	1.2687	0.00068291	1.8918	0.0010183	538.2964980147514	60.506	7.2289	60.506	59.819	67.048	0					664	265	5	0	0	0	0.0024096	16	14732	14732;14769;14820;14924;14968;15017;15069;15116;15160;15422;15469;15519;15564;15615;15665;15807		106.94	62.533	1	233390000			61151	5048	35090	35091	74747;74748;74749;74750;74751;74752;74753;74754;74755;74756;74757;74758;74759;74760;74761;74762	74747					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.295654296875	2	538.294768	1074.57498	0.4876	0.00026247	0.94989	0.00051132	1.4375	0.00077379	538.7968295865466	70.383	1.2267	70.383	69.843	71.07	0					95	44	3	0	0	0	0.03069	1	17955	17955		60.074	35.4	1	324160			61152	5048	35090	35091	74763	74763					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2955322265625	2	538.294768	1074.57498	0.74271	0.00039979	0.55431	0.00029838	1.297	0.00069818	538.2951473242274	77.392	3.2819	77.392	76.31	79.592	0					183	125	2	0	0	0	0.079752	1	19722	19722		41.84	17.166	1	357190			61153	5048	35090	35091	74764	74764					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.2958374023438	2	538.294768	1074.57498	0.65544	0.00035282	-0.33637	-0.00018106	0.31907	0.00017176	538.2946312863389	82.891	1.0336	82.891	82.287	83.321	0					67	39	2	0	0	0	0.23007	1	21561	21561		19.257	4.6753	1	112950			61154	5048	35090	35091	74765	74765					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7857055664062	2	538.294768	1074.57498	0.67238	0.00036194	0.34593	0.00018621	1.0183	0.00054815	538.2949466221065	86.288	0.79699	86.288	85.609	86.406	0					38	29	2	0	0	0	0.15219	1	22687	22687		30.637	5.9627	1	105630			61155	5048	35090	35091	74766	74766					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.7582397460938	2	538.294768	1074.57498	0.36155	0.00019462	-0.31278	-0.00016837	0.04877	2.6253E-05	538.7955291246116	93.627	1.0434	93.627	93.044	94.087	0					132	86	2	0	0	0	0.23784	1	24774	24774		19.257	4.6753	1	81766			61156	5048	35090	35091	74767	74767					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.296630859375	2	538.294768	1074.57498	0.61896	0.00033318	0.66518	0.00035806	1.2841	0.00069124	538.7963069682538	88.347	1.0281	88.347	88.002	89.03	0					72	50	2	0	0	0	0.21389	1	23493	23493		25.399	5.9603	1	153600			61157	5048	35090	35091	74768	74768					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.863525390625	2	538.294768	1074.57498	0.5884	0.00031673	0.66441	0.00035765	1.2528	0.00067438	538.7964332937572	89.073	0.57468	89.073	88.904	89.479	0					40	26	2	0	0	0	0.23784	1	23654	23654		19.257	2.3147	1	108090			61158	5048	35090	35091	74769	74769					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8634643554688	2	538.294768	1074.57498	0.48642	0.00026184	0.6497	0.00034973	1.1361	0.00061156	538.2951456060492	81.97	0.81713	81.97	81.412	82.23	0					46	31	2	0	0	0	0.20167	1	21372	21372		29.082	2.1979	1	159410			61159	5048	35090	35091	74770	74770					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2947387695312	2	538.294768	1074.57498	0.43703	0.00023525	1.3898	0.00074812	1.8268	0.00098337	538.2965706720208	60.363	7.2296	60.458	59.828	67.057	0.095093					679	264	8	0	0	0	0.0037449	17	14689	14689;14738;14785;14893;14935;14987;15038;15087;15158;15379;15428;15475;15525;15533;15585;15738;15794		96.367	59.86	1	199870000			61160	5048	35090	35091	74771;74772;74773;74774;74775;74776;74777;74778;74779;74780;74781;74782;74783;74784;74785;74786;74787	74771					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.29541015625	2	538.294768	1074.57498	0.41265	0.00022212	0.9573	0.00051531	1.3699	0.00073743	538.2950915788914	70.603	1.5006	70.664	69.851	71.351	0.060783					110	52	3	0	0	0	0.041175	1	17781	17781		56.177	56.177	1	317650			61161	5048	35090	35091	74788	74788					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2955322265625	2	538.294768	1074.57498	0.63542	0.00034204	0.014585	7.8513E-06	0.65001	0.0003499	538.2947511724175	84.312	1.0755	84.389	84.049	85.125	0.077095					61	42	2	0	0	0	0.17277	1	22102	22102		27.629	2.2295	1	167070			61162	5048	35090	35091	74789	74789					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.29443359375	2	538.294768	1074.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.523	1	71.58	71.08	72.08	0.056572								0	0	0	0.065718	1	18178	18178		56.177	23.872	1				61163	5048	35090	35091	74790	74790					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7860107421875	2	538.294768	1074.57498	0.52938	0.00028496	1.0025	0.00053965	1.5319	0.00082461	538.2953821964148	86.11	0.74553	86.195	85.696	86.442	0.084251					44	27	2	0	0	0	0.22674	1	22682	22682		22.736	3.2973	1	138680			61164	5048	35090	35091	74791	74791					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.7579956054688	2	538.294768	1074.57498	0.38408	0.00020675	0.3395	0.00018275	0.72358	0.0003895	538.7962816033805	92.782	0.21118	92.871	92.777	92.988	0.089203					23	18	2	0	0	0	0.2451	1	24686	24686		15.847	1.2655	1	139040			61165	5048	35090	35091	74792	74792					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8632202148438	2	538.294768	1074.57498	0.51906	0.00027941	0.63472	0.00034167	1.1538	0.00062107	538.2951762188269	76.935	2.4637	76.991	76.163	78.627	0.055412					154	88	2	0	0	0	0.15943	1	19748	19748		39.95	5.8473	1	264670			61166	5048	35090	35091	74793	74793					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8638916015625	2	538.294768	1074.57498	0.57193	0.00030787	0.52582	0.00028304	1.0977	0.00059091	538.2950903100839	79.168	0.76083	79.229	78.633	79.394	0.061409					52	33	2	0	0	0	0.18123	1	20423	20423		34.402	14.963	1	210440			61167	5048	35090	35091	74794	74794					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.3272705078125	2	538.294768	1074.57498	0.45279	0.00024373	0.84337	0.00045398	1.2962	0.00069772	538.2953643265275	90.444	0.34708	90.535	90.325	90.672	0.090675					42	28	2	0	0	0	0.21389	1	23964	23964		25.399	3.6527	1	99851			61168	5048	35090	35091	74795	74795					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8634643554688	2	538.294768	1074.57498	0.13561	7.3001E-05	1.1532	0.00062077	1.2888	0.00069377	538.2954843265866	81.277	0.71451	81.346	80.91	81.624	0.068993					55	36	2	0	0	0	0.24471	1	21186	21186		17.113	3.605	1	131240			61169	5048	35090	35091	74796	74796					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.297607421875	2	538.294768	1074.57498	0.7371	0.00039678	1.1856	0.00063818	1.9227	0.001035	538.2964742147142	60.487	5.0164	60.476	59.763	64.78	-0.011341					631	183	6	0	0	0	0.0024096	16	14806	14721;14764;14806;14848;14912;14960;15008;15059;15108;15168;15405;15458;15508;15556;15601;15798		106.94	62.533	1	228850000			61170	5048	35090	35091	74797;74798;74799;74800;74801;74802;74803;74804;74805;74806;74807;74808;74809;74810;74811;74812	74799					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2955322265625	2	538.294768	1074.57498	0.51989	0.00027985	0.59267	0.00031903	1.1126	0.00059888	538.2951443148909	80.162	1.2423	80.135	79.546	80.788	-0.026825					84	44	3	0	0	0	0.088443	1	20847	20847		39.95	15.276	1	216830			61171	5048	35090	35091	74813	74813					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2953491210938	2	538.294768	1074.57498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.058	1	89.057	88.557	89.557	-0.00080872								0	0	0	0.17427	1	23539	23539		29.082	9.6426	1				61172	5048	35090	35091	74814	74814					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.2857666015625	2	538.294768	1074.57498	0.56056	0.00030175	0.75049	0.00040398	1.311	0.00070573	538.2951356684644	70.649	1.4881	70.624	69.829	71.317	-0.024864					116	53	3	0	0	0	0.059216	1	17678	17678		60.074	33.733	1	284520			61173	5048	35090	35091	74815	74815					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.76904296875	2	538.294768	1074.57498	0.71529	0.00038504	-0.067943	-3.6573E-05	0.64735	0.00034847	538.294858014141	85.719	1.0806	85.71	84.818	85.899	-0.0090027					62	41	2	0	0	0	0.14961	1	22503	22503		41.84	9.5341	1	154580			61174	5048	35090	35091	74816	74816					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	537.8068237304688	2	538.294768	1074.57498	0.64365	0.00034647	-0.043374	-2.3348E-05	0.60027	0.00032312	538.7961024894721	93.241	0.17468	93.24	93.124	93.299	-0.00051117					30	19	2	0	0	0	0.22061	1	24817	24817		24.021	24.021	1	77501			61175	5048	35090	35091	74817	74817					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8630981445312	2	538.294768	1074.57498	0.66623	0.00035863	-0.083578	-4.499E-05	0.58265	0.00031364	538.2947343819608	91.4	0.30155	91.401	91.255	91.557	0.00046539					27	19	2	0	0	0	0.18123	1	24295	24295		27.629	2.9549	1	104760			61176	5048	35090	35091	74818	74818					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.8634033203125	2	538.294768	1074.57498	0.96804	0.00052109	0.18218	9.8067E-05	1.1502	0.00061916	538.2949427223746	77.736	1.7436	77.704	77.237	78.981	-0.031334					112	66	2	0	0	0	0.20881	1	20333	20333		27.629	11.782	1	247780			61177	5048	35090	35091	74819	74819					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7861328125	2	538.294768	1074.57498	0.68518	0.00036883	0.72013	0.00038764	1.4053	0.00075647	538.2952218739158	86.183	0.56362	86.174	85.822	86.386	-0.0090027					37	21	2	0	0	0	0.22674	1	22707	22707		22.736	3.2973	1	94902			61178	5048	35090	35091	74820	74820					0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	538.294768	1074.57498	0.47677	0.00025665	0.48576	0.00026148	0.96253	0.00051813	538.2952429348553	80.178	1.4927	80.178	79.411	80.904	0	-0.06955	-3.3768E-05	NaN	39.95	88	58	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201460			61179	5048	35090	35091							0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	538.294768	1074.57498	0.4572	0.00024611	1.2437	0.00066948	1.7009	0.00091559	538.2953674497846	81.068	0.74284	81.068	80.888	81.631	0	-0.16218	0.0002028	NaN	22.736	58	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146280			61180	5048	35090	35091							0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	538.294768	1074.57498	0.3655	0.00019675	-0.74701	-0.00040211	-0.38151	-0.00020536	538.795288777858	93.583	0.66235	93.67	93.353	94.015	0.08667	0.033555	-0.0001636	NaN	19.257	104	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140030			61181	5048	35090	35091							0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	538.294768	1074.57498	0.3875	0.00020859	0.48993	0.00026373	0.87743	0.00047232	538.2953042196812	80.365	1.5297	80.43	79.376	80.906	0.065094	0.18208	-2.9272E-05	NaN	39.95	99	58	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237000			61182	5048	35090	35091							0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	538.294768	1074.57498	0.62945	0.00033883	-0.82977	-0.00044666	-0.20031	-0.00010783	538.7952113424645	93.612	1.0818	93.611	93.281	94.363	-0.00051117	-0.024771	-0.00025269	NaN	19.257	117	82	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141670			61183	5048	35090	35091							0.04067815108442119
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	538.294768	1074.57498	0.51196	0.00027558	0.78305	0.00042151	1.295	0.00069709	538.2951582734685	81.302	0.73548	81.277	80.762	81.497	-0.02404	0.046963	-0.00029314	NaN	22.736	50	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174450			61184	5048	35090	35091							0.04067815108442119
YYTKGFALLN	10	Unmodified	_YYTKGFALLN_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	595.3164672851562	2	595.316232	1188.61791	0.10513	6.2587E-05	0.64001	0.00038101	0.74515	0.0004436	595.3165271659407	61.542	0.56697	61.639	61.385	61.952	0.096985					51	20	3	0	0	0	0.2811	1	15116	15116		22.736	0	1	643520			61185	5048	35091	35092	74821	74821					0.031145851658720858
YYTLGDSACTF	11	Unmodified	_YYTLGDSACTF_					0	0	0			REV__ENSG00000173714|ENST00000311378|WFIKKN2	REV__ENSG00000173714|ENST00000311378|WFIKKN2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	620.763427734375	2	620.763171	1239.51179	0.4498	0.00027922	-0.25733	-0.00015974	0.19247	0.00011948	620.7629150656327	56.593	1.0323	56.593	56.267	57.299	0					84	38	3	0	0	0	0.35522	1	13657	13657		17.113	6.2139	1	1573800	+		61186	17799	35092	35093	74822	74822					-0.09838538461781354
YYTMDLAKDL	10	Unmodified	_YYTMDLAKDL_					0	0	0			REV__ENST00000515387.1_1_5:96239260-96245469:+|nuORF	REV__ENST00000515387.1_1_5:96239260-96245469:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	411.227783203125	3	411.533768	1231.57948	0.060228	2.4786E-05	-1.8409	-0.0007576	-1.7807	-0.00073281	411.53297754239134	23.583	0.50576	23.51	23.285	23.791	-0.072559					29	17	2	0	0	0	0.31969	1	3534	3534		5.7834	0.73591	1	102330	+		61187	17147	35093	35094	74823	74823					-0.02705088530979083
YYTNSLEKL	9	Unmodified	_YYTNSLEKL_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3;ZFHX3|p.V2783Afs*6|1|0.37|ENSG00000140836|chr16:72794330-72794334|GGGGA/-|frameshift_variant	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	566.25390625	2	565.790047	1129.56554	0.67617	0.00038257	-0.71642	-0.00040534	-0.04025	-2.2773E-05	565.7895786255858	45.375	0.25528	45.435	45.31	45.565	0.059834					13	8	2	0	0	0	0.24289	1	10131	10131		18.146	7.3224	1	133550			61188	4338	35094	35095	74824	74824					0.005940020322668715
YYTPITPHL	9	Unmodified	_YYTPITPHL_					0	0	0		nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	552.7901611328125	2	552.78985	1103.56515	0.56743	0.00031367	-0.18346	-0.00010141	0.38397	0.00021225	552.789631311542	55.696	0.85513	55.696	55.274	56.13	0					90	30	4	0	0	0	2.4571E-07	3	13313	13269;13313;13364		170.55	126.14	1	5985300			61189	2869	35095	35096	74825;74826;74827	74826					0.01750627103047009
YYTPITPHL	9	Unmodified	_YYTPITPHL_					0	0	0		nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	553.3204956054688	2	552.78985	1103.56515	0.018174	1.0046E-05	-0.81957	-0.00045305	-0.80139	-0.000443	552.7893691144989	13.296	0.39061	13.296	13.118	13.509	0					23	13	2	0	0	0	0.26145	1	421	421		2.0598	2.0598	1	112990			61190	2869	35095	35096	74828	74828					0.01750627103047009
YYTPITPHL	9	Unmodified	_YYTPITPHL_					0	0	0		nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	552.7901611328125	2	552.78985	1103.56515	0.65304	0.00036099	-0.092184	-5.0959E-05	0.56086	0.00031004	552.7896835780231	55.592	0.77947	55.663	55.297	56.077	0.070885					88	28	5	0	0	0	2.4571E-07	3	13294	13245;13294;13341		170.55	126.14	1	6082200			61191	2869	35095	35096	74829;74830;74831	74830					0.01750627103047009
YYTPITPHL	9	Unmodified	_YYTPITPHL_					0	0	0		nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	nc|ENSG00000119314|O95758-1|PTBP3	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	552.7901000976562	2	552.78985	1103.56515	0.58	0.00032062	-0.098379	-5.4383E-05	0.48163	0.00026624	552.7896500134113	55.755	0.89355	55.736	55.319	56.213	-0.019081					101	32	4	0	0	0	2.4571E-07	3	13324	13278;13324;13374		170.55	126.14	1	5579800			61192	2869	35095	35096	74832;74833;74834	74833					0.01750627103047009
YYTQTVYEE	9	Unmodified	_YYTQTVYEE_					0	0	0		nc|ENSG00000164074|Q0P651-4|ABHD18;nc|ENSG00000164074|Q0P651-3|ABHD18;ENST00000473040.6_1_4:128905516-128956965:+|nuORF;ENSG00000164074|ENST00000645843|ABHD18	nc|ENSG00000164074|Q0P651-4|ABHD18	nc|ENSG00000164074|Q0P651-4|ABHD18	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.2628173828125	2	598.261319	1194.50808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.124	1	80.098	79.598	80.598	-0.026825								0	0	0	0.25631	1	20794	20794		4.3292	2.0265	1				61193	5781	35096	35097	74835	74835					-0.08138884963977944
YYTRLGNDF	9	Unmodified	_YYTRLGNDF_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000560639.1_1_15:83207600-83209179:-|nuORF;ENST00000559273.1_1_15:83208730-83209179:-|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.7722778320312	2	574.772188	1147.52982	0.31011	0.00017825	-0.016853	-9.6867E-06	0.29326	0.00016856	574.7720221541196	45.726	0.50605	45.786	45.565	46.072	0.059837					27	17	2	0	0	0	0.018042	1	10234	10234		67.081	38.594	1	357030			61194	7316	35097	35098	74836	74836					-0.03804035424786889
YYTRLGNDF	9	Unmodified	_YYTRLGNDF_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000560639.1_1_15:83207600-83209179:-|nuORF;ENST00000559273.1_1_15:83208730-83209179:-|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.77197265625	2	574.772188	1147.52982	0.44353	0.00025493	-0.13738	-7.8961E-05	0.30615	0.00017597	574.7718864757264	45.769	0.44783	45.834	45.595	46.043	0.065052					27	15	2	0	0	0	0.0035713	1	10243	10243		97.741	57.784	1	223880			61195	7316	35097	35098	74837	74837					-0.03804035424786889
YYTRLGNDF	9	Unmodified	_YYTRLGNDF_					0	0	0		ENSG00000182774|ENST00000647841|RPS17;ENST00000560639.1_1_15:83207600-83209179:-|nuORF;ENST00000559273.1_1_15:83208730-83209179:-|nuORF	ENSG00000182774|ENST00000647841|RPS17	ENSG00000182774|ENST00000647841|RPS17	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		2	574.772188	1147.52982	0.31006	0.00017821	-0.080664	-4.6363E-05	0.2294	0.00013185	574.7721802677125	46.065	0.30647	46.065	45.888	46.194	0	0.16975	-2.7433E-05	NaN	97.741	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375350			61196	7316	35097	35098							-0.03804035424786889
YYTSRPALF	9	Unmodified	_YYTSRPALF_					0	0	0		nc|ENSG00000103502|O14735-3|CDIPT;ENSG00000103502|ENST00000219789|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	559.8138427734375	2	559.287474	1116.5604	0.37206	0.00020809	-0.0082166	-4.5954E-06	0.36385	0.00020349	559.2871598097325	50.092	0.59331	50.092	49.868	50.461	0					45	21	3	0	0	0	0.11397	1	11657	11657		49.933	28.186	1	404610			61197	1840	35098	35099	74838	74838					0.0067774296028346726
YYTSRPALF	9	Unmodified	_YYTSRPALF_					0	0	0		nc|ENSG00000103502|O14735-3|CDIPT;ENSG00000103502|ENST00000219789|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	559.2877807617188	2	559.287474	1116.5604	0.65663	0.00036724	0.01785	9.9834E-06	0.67448	0.00037723	559.2871084138825	50.158	0.80281	50.179	49.802	50.604	0.020691					41	29	2	0	0	0	0.016723	1	11569	11569		69.105	36.799	1	481680			61198	1840	35098	35099	74839	74839					0.0067774296028346726
YYTSRPALF	9	Unmodified	_YYTSRPALF_					0	0	0		nc|ENSG00000103502|O14735-3|CDIPT;ENSG00000103502|ENST00000219789|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	nc|ENSG00000103502|O14735-3|CDIPT	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2		2	559.287474	1116.5604	0.67106	0.00037532	0.008899	4.9771E-06	0.67996	0.00038029	559.2871985673524	50.039	0.62653	50.083	49.776	50.403	0.044888	-0.034548	7.4645E-06	NaN	69.105	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475710			61199	1840	35098	35099							0.0067774296028346726
YYTSVTPVL	9	Unmodified	_YYTSVTPVL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;PTBP1|p.E189Gfs*76|1|0.06|ENSG00000011304|chr19:804662-804678|AGAACCTCTTCTACCCT/-|frameshift_variant;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	521.7760620117188	2	521.776408	1041.53826	0.57868	0.00030194	0.12724	6.6392E-05	0.70593	0.00036834	521.7763886924288	63.675	0.52438	63.675	63.443	63.967	0					44	18	3	0	0	0	0.1669	2	15775	15775;15783		28.487	11.545	1	259870			61200	440	35099	35100	74840;74841	74840					0.019155184918645318
YYTSVTPVL	9	Unmodified	_YYTSVTPVL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;PTBP1|p.E189Gfs*76|1|0.06|ENSG00000011304|chr19:804662-804678|AGAACCTCTTCTACCCT/-|frameshift_variant;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	521.2901611328125	2	521.776408	1041.53826	0.53443	0.00027885	0.69993	0.00036521	1.2344	0.00064406	521.7767815952847	63.559	0.51608	63.654	63.445	63.961	0.095722					39	17	3	0	0	0	0.22596	1	15739	15739		21.747	4.8044	1	320200			61201	440	35099	35100	74842	74842					0.019155184918645318
YYTSVTPVL	9	Unmodified	_YYTSVTPVL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;PTBP1|p.E189Gfs*76|1|0.06|ENSG00000011304|chr19:804662-804678|AGAACCTCTTCTACCCT/-|frameshift_variant;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	521.2904052734375	2	521.776408	1041.53826	0.58088	0.00030309	0.67773	0.00035362	1.2586	0.00065671	521.7765150588458	63.665	0.55984	63.657	63.351	63.911	-0.0085564					32	19	2	0	0	0	0.2451	1	15799	15799		15.847	4.2069	1	322780			61202	440	35099	35100	74843	74843					0.019155184918645318
YYTVRMFLD	9	Unmodified	_YYTVRMFLD_					0	0	0		ENSG00000223601|ENST00000422359|EBLN1	ENSG00000223601|ENST00000422359|EBLN1	ENSG00000223601|ENST00000422359|EBLN1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.8124389648438	2	604.294442	1206.57433	0.051567	3.1162E-05	3.1183	0.0018843	3.1698	0.0019155	604.7975189654911	60.204	0.13107	60.204	60.15	60.281	0					8	4	3	0	0	0	0.2322	1	14726	14726		20.454	2.3186	1	332710			61203	8437	35100	35101	74844	74844					-0.02069347602923699
YYTVSCDELY	10	Unmodified	_YYTVSCDELY_					0	0	0			REV__ENST00000261396.5_1_1:229637746-229637812:-|nuORF	REV__ENST00000261396.5_1_1:229637746-229637812:-|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	628.262939453125	2	628.263004	1254.51146	0.44827	0.00028163	0.035684	2.2419E-05	0.48395	0.00030405	628.2628187171844	63.526	0.62785	63.526	63.143	63.771	0					37	22	2	0	0	0	0.38233	1	15717	15717		6.7232	0	1	273260	+		61204	19591	35101	35102	74845	74845					-0.10561958181642694
YYVACNVLCSA	11	Unmodified	_YYVACNVLCSA_					0	0	0		ENST00000371437.4_1_X:119010566-119010602:+|nuORF	ENST00000371437.4_1_X:119010566-119010602:+|nuORF	ENST00000371437.4_1_X:119010566-119010602:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	603.2699584960938	2	603.270109	1204.52567	0.10446	6.3018E-05	0.15479	9.3379E-05	0.25925	0.0001564	603.2701848060759	59.923	0.49928	59.923	59.728	60.228	0					40	17	3	0	0	0	0.29431	2	14616	14616;14665		22.736	2.3217	1	1004600			61205	9819	35102	35103	74846;74847	74846					-0.06841584234325637
YYVACNVLCSA	11	Unmodified	_YYVACNVLCSA_					0	0	0		ENST00000371437.4_1_X:119010566-119010602:+|nuORF	ENST00000371437.4_1_X:119010566-119010602:+|nuORF	ENST00000371437.4_1_X:119010566-119010602:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	603.2710571289062	2	603.270109	1204.52567	-0.031987	-1.9297E-05	0.25812	0.00015571	0.22613	0.00013642	603.270337590697	59.85	0.58122	59.945	59.687	60.268	0.095093					46	20	3	0	0	0	0.22366	2	14569	14569;14616		29.082	2.8134	1	863860			61206	9819	35102	35103	74848;74849	74848					-0.06841584234325637
YYVACNVLCSA	11	Unmodified	_YYVACNVLCSA_					0	0	0		ENST00000371437.4_1_X:119010566-119010602:+|nuORF	ENST00000371437.4_1_X:119010566-119010602:+|nuORF	ENST00000371437.4_1_X:119010566-119010602:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	603.270751953125	2	603.270109	1204.52567	0.23836	0.0001438	-0.10379	-6.2615E-05	0.13457	8.1181E-05	603.270195143284	59.939	0.5906	59.928	59.683	60.273	-0.011486					41	20	3	0	0	0	0.18241	1	14609	14609		32.786	6.5175	1	945510			61207	9819	35102	35103	74850	74850					-0.06841584234325637
YYVFIIPY	8	Unmodified	_YYVFIIPY_					0	0	0			REV__ENSG00000189252|ENST00000370503|SPANXN3	REV__ENSG00000189252|ENST00000370503|SPANXN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	538.8630981445312	2	539.286411	1076.55827	0.44059	0.00023761	-1.17	-0.00063099	-0.72945	-0.00039338	539.2856235358579	76.505	0.61851	76.505	76.283	76.902	0					30	22	2	0	0	0	0.31651	1	19703	19703		24.21	7.1234	1	146840	+		61208	18602	35103	35104	74851	74851					0.023053142224853218
YYVFIIPY	8	Unmodified	_YYVFIIPY_					0	0	0			REV__ENSG00000189252|ENST00000370503|SPANXN3	REV__ENSG00000189252|ENST00000370503|SPANXN3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8632202148438	2	539.286411	1076.55827	0.26064	0.00014056	-0.18907	-0.00010196	0.071565	3.8594E-05	539.286538506273	76.535	0.81717	76.588	76.216	77.033	0.053421					38	28	2	0	0	0	0.33618	1	19668	19668		17.087	3.5787	1	133610	+		61209	18602	35103	35104	74852	74852					0.023053142224853218
YYVGAAHGL	9	Unmodified	_YYVGAAHGL_					0	0	0		ENSG00000115365|ENST00000450366|LANCL1	ENSG00000115365|ENST00000450366|LANCL1	ENSG00000115365|ENST00000450366|LANCL1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	476.2849426269531	2	475.74016	949.465767	0.15577	7.4105E-05	-1.6881	-0.0008031	-1.5323	-0.000729	475.73868994009587	38.933	0.16138	39.025	38.944	39.105	0.09267					7	5	2	0	0	0	0.24542	1	8156	8156		14.582	3.4672	1	104520			61210	2639	35104	35105	74853	74853					-0.010987707910544486
YYVGGEIVTI	10	Unmodified	_YYVGGEIVTI_					0	0	0		nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	nc|ENSG00000184432|P35606-2|COPB2	nc|ENSG00000184432|P35606-2|COPB2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	557.294921875	2	557.294965	1112.57538	0.35829	0.00019967	-0.52241	-0.00029114	-0.16412	-9.1466E-05	557.29518509945	71.447	0.56277	71.447	71.292	71.855	0					25	19	2	0	0	0	0.0048568	1	18178	18178		92.491	36.314	1	576050			61211	7453	35105	35106	74854	74854					0.023591900376231933
YYVLARLQ	8	Unmodified	_YYVLARLQ_					0	0	0			REV__LIPE|p.V440Yfs*123|1|0.09|ENSG00000079435|chr19:42410408-42410408|C/-|frameshift_variant	REV__LIPE|p.V440Yfs*123|1|0.09|ENSG00000079435|chr19:42410408-42410408|C/-|frameshift_variant	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	513.257568359375	2	513.292559	1024.57057	0.063874	3.2786E-05	0.37803	0.00019404	0.44191	0.00022683	513.292262213458	39.81	0.56779	39.81	39.51	40.078	0					46	20	3	0	0	0	0.29855	1	8361	8361		32.117	12.678	1	161610	+		61212	13870	35106	35107	74855	74855					0.05926350685513171
YYVLARLQ	8	Unmodified	_YYVLARLQ_					0	0	0			REV__LIPE|p.V440Yfs*123|1|0.09|ENSG00000079435|chr19:42410408-42410408|C/-|frameshift_variant	REV__LIPE|p.V440Yfs*123|1|0.09|ENSG00000079435|chr19:42410408-42410408|C/-|frameshift_variant	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		2	513.292559	1024.57057	0.20206	0.00010372	0.27129	0.00013925	0.47335	0.00024297	513.7945287213063	39.661	0.52508	39.76	39.452	39.977	0.099407	-0.024599	-5.2115E-05	NaN	32.117	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170100	+		61213	13870	35106	35107							0.05926350685513171
YYVLSGGSHPF	11	Unmodified	_YYVLSGGSHPF_					0	0	0		ENSG00000134398|ENST00000256797|ERN2	ENSG00000134398|ENST00000256797|ERN2	ENSG00000134398|ENST00000256797|ERN2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	409.90570068359375	3	409.532868	1225.57677	0.027565	1.1289E-05	-3.857	-0.0015796	-3.8294	-0.0015683	409.53110606388236	31.27	0.35716	31.311	31.178	31.535	0.040989					13	12	2	0	0	0	0.33094	1	5795	5795		7.4771	1.2852	1	48092			61214	3782	35107	35108	74856	74856					-0.026991758736130578
YYVNGTYRL	9	Unmodified	_YYVNGTYRL_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;ENST00000518062.1_1_5:158588183-158590023:-|nuORF	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	574.7913818359375	2	574.790381	1147.56621	0.52961	0.00030441	0.79967	0.00045964	1.3293	0.00076406	574.7907981370197	46.962	0.87333	46.962	46.675	47.549	0					69	30	3	0	0	0	0.00023138	1	10606	10606		142.08	94.331	1	2786200			61215	4675	35108	35109	74857	74857					-0.0016715852802917652
YYVNGTYRL	9	Unmodified	_YYVNGTYRL_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;ENST00000518062.1_1_5:158588183-158590023:-|nuORF	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	574.791015625	2	574.790381	1147.56621	0.48396	0.00027817	0.81299	0.0004673	1.2969	0.00074547	574.7908054495739	46.738	1.124	46.79	46.527	47.651	0.052574					94	41	4	0	0	0	0.0027395	1	10569	10569		114.2	68.502	1	2637100			61216	4675	35108	35109	74858	74858					-0.0016715852802917652
YYVNGTYRL	9	Unmodified	_YYVNGTYRL_					0	0	0		ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;ENST00000518062.1_1_5:158588183-158590023:-|nuORF	ENSG00000145860|ENST00000424310|RNF145	ENSG00000145860|ENST00000424310|RNF145	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	574.7910766601562	2	574.790381	1147.56621	0.50063	0.00028776	0.73829	0.00042436	1.2389	0.00071212	574.7908689438384	46.781	0.86738	46.836	46.574	47.442	0.054371					78	30	4	0	0	0	0.0033458	1	10555	10555		110.67	70.725	1	2433000			61217	4675	35108	35109	74859	74859					-0.0016715852802917652
YYVQRLLEL	9	Unmodified	_YYVQRLLEL_					0	0	0			REV__nc|ENSG00000141258|O43147-5|SGSM2;REV__ENST00000574857.1_1_17:2276102-2276510:+|nuORF	REV__nc|ENSG00000141258|O43147-5|SGSM2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	598.8356323242188	2	598.837331	1195.66011	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.896	1	46.951	46.451	47.451	0.054371								0	0	0	0.21009	1	10595	10595		19.257	0.88389	1		+		61218	16068;22435	35109	35110	74860	74860					0.07010560574258307
YYVQSYIFY	9	Unmodified	_YYVQSYIFY_					0	0	0			REV__nc|ENSG00000158813|Q92838-9|EDA	REV__nc|ENSG00000158813|Q92838-9|EDA	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	623.2982788085938	2	623.294965	1244.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	16.96	1	16.96	16.46	17.46	0								0	0	0	0.26704	1	1485	1485		0.6015	0	1		+		61219	23046	35110	35111	74861	74861					-0.03712809962371466
YYVRAVLHL	9	Unmodified	_YYVRAVLHL_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	567.3271484375	2	567.326934	1132.63931	0.6486	0.00036797	0.15974	9.0622E-05	0.80834	0.00045859	567.3267979969064	50.823	0.75294	50.823	50.544	51.297	0					80	27	4	0	0	0	0.00268	2	11797	11797;11843		104.8	55.13	1	2607200			61220	670	35111	35112	74862;74863	74862					0.07830014985233902
YYVRAVLHL	9	Unmodified	_YYVRAVLHL_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	567.3267822265625	2	567.326934	1132.63931	0.66783	0.00037888	0.092277	5.2351E-05	0.7601	0.00043123	567.3267142001043	50.82	0.71778	50.867	50.604	51.321	0.046574					69	26	4	0	0	0	0.0085732	1	11799	11799		81.613	31.944	1	2094000			61221	670	35111	35112	74864	74864					0.07830014985233902
YYVRAVLHL	9	Unmodified	_YYVRAVLHL_					0	0	0		ENSG00000051523|ENST00000261623|CYBA;ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENSG00000051523|ENST00000261623|CYBA	ENSG00000051523|ENST00000261623|CYBA	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	567.3272705078125	2	567.326934	1132.63931	0.58303	0.00033077	0.20975	0.000119	0.79278	0.00044977	567.3268089326908	50.918	0.70008	50.927	50.647	51.347	0.0095634					68	26	3	0	0	0	0.05508	1	11864	11864		48.346	26.599	1	1298900			61222	670	35111	35112	74865	74865					0.07830014985233902
YYVRILSTI	9	Unmodified	_YYVRILSTI_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	564.7584228515625	2	564.326599	1126.63865	0.31103	0.00017552	-0.67967	-0.00038356	-0.36864	-0.00020803	564.3263020288227	63.232	1.1462	63.232	62.984	64.13	0					68	41	4	0	0	0	0.10058	1	15694	15694		45.7	22.963	1	1253200			61223	459	35112	35113	74866	74866					0.08039175545536636
YYVRILSTI	9	Unmodified	_YYVRILSTI_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	564.7583618164062	2	564.326599	1126.63865	0.4494	0.00025361	-0.84074	-0.00047445	-0.39134	-0.00022084	564.3262345141096	63.082	0.89144	63.177	62.985	63.876	0.095726					65	31	4	0	0	0	0.12329	1	15654	15654		41.956	24.843	1	1454500			61224	459	35112	35113	74867	74867					0.08039175545536636
YYVRILSTI	9	Unmodified	_YYVRILSTI_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	563.81103515625	2	564.326599	1126.63865	0.31858	0.00017978	-0.70223	-0.00039629	-0.38365	-0.00021651	564.3263244683205	63.231	0.72503	63.223	62.994	63.719	-0.0085564					54	25	3	0	0	0	0.042824	1	15646	15646		75.761	46.679	1	1110600			61225	459	35112	35113	74868	74868					0.08039175545536636
YYVRVLTGI	9	Unmodified	_YYVRVLTGI_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	541.7979125976562	2	542.313492	1082.61243	0.47739	0.00025889	-0.61663	-0.0003344	-0.13924	-7.551E-05	542.3132827489463	58.946	0.39465	58.946	58.712	59.107	0					19	13	3	0	0	0	0.18936	1	14319	14319		32.786	20.254	1	227490			61226	6700	35113	35114	74869	74869					0.07442906374035374
YYVRVLTGI	9	Unmodified	_YYVRVLTGI_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	541.7977294921875	2	542.313492	1082.61243	0.582	0.00031563	-0.64081	-0.00034752	-0.058807	-3.1892E-05	542.3130540031876	58.837	0.27473	58.928	58.708	58.983	0.091305					15	9	2	0	0	0	0.15943	1	14278	14278		39.95	20.693	1	183620			61227	6700	35113	35114	74870	74870					0.07442906374035374
YYVRVLTGI	9	Unmodified	_YYVRVLTGI_					0	0	0		nc|ENSG00000173193|Q460N5-1|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-1|PARP14	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	541.769775390625	2	542.313492	1082.61243	0.63425	0.00034396	-1.1291	-0.00061234	-0.49487	-0.00026838	542.3128168346337	58.946	0.22506	58.931	58.806	59.031	-0.014267					12	7	2	0	0	0	0.15943	1	14320	14320		39.95	20.693	1	305590			61228	6700	35113	35114	74871	74871					0.07442906374035374
YYVRYGRV	8	Unmodified	_YYVRYGRV_					0	0	0			REV__ENSG00000142949|ENST00000359947|PTPRF	REV__ENSG00000142949|ENST00000359947|PTPRF	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.2976684570312	2	538.287808	1074.56106	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.309	1	95.392	94.892	95.892	0.082779								0	0	0	0.36961	1	25454	25454		5.7604	0	1		+		61229	16140	35114	35115	74872	74872					0.02676582399999461
YYVTRKLF	8	Unmodified	_YYVTRKLF_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A;ENST00000586972.1_1_17:40265669-40266402:-|nuORF	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	545.74609375	2	545.30821	1088.60187	0.69994	0.00038168	-0.55097	-0.00030045	0.14897	8.1233E-05	545.3076590521512	71.63	0.52905	71.603	71.452	71.981	-0.027275					22	18	2	0	0	0	0.3225	1	18284	18284		22.453	10.812	1	356940			61230	2211	35115	35116	74873	74873					0.06110923719620587
YYVTVVILHS	10	Unmodified	_YYVTVVILHS_					0	0	0			REV__ENSG00000255582|ENST00000542433|OR10G2	REV__ENSG00000255582|ENST00000542433|OR10G2	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	597.7793579101562	2	597.331882	1192.64921	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.44	1	78.41	77.91	78.91	-0.030434								0	0	0	0.3749	1	20279	20279		4.3292	1.0479	1		+		61231	19245	35116	35117	74874	74874					0.06059158199968806
YYVWLQHTL	9	Unmodified	_YYVWLQHTL_					0	0	0		nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR	nc|ENSG00000003402|O15519-8|CFLAR	nc|ENSG00000003402|O15519-8|CFLAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	611.8167114257812	2	611.816399	1221.61824	0.45739	0.00027984	-0.37845	-0.00023154	0.078933	4.8292E-05	611.8161813380576	65.612	0.77951	65.612	65.345	66.124	0					68	27	4	0	0	0	0.0016361	3	16401	16351;16401;16466		114.65	70.667	1	615510			61232	303	35117	35118	74875;74876;74877	74876					0.016300048857146976
YYVWLQHTL	9	Unmodified	_YYVWLQHTL_					0	0	0		nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR	nc|ENSG00000003402|O15519-8|CFLAR	nc|ENSG00000003402|O15519-8|CFLAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	611.8163452148438	2	611.816399	1221.61824	0.10578	6.4718E-05	-0.027292	-1.6698E-05	0.078488	4.802E-05	611.8163275679871	65.476	0.65044	65.565	65.323	65.973	0.088875					60	23	4	0	0	0	0.0016361	2	16333	16333;16406		114.65	77.574	1	686030			61233	303	35117	35118	74878;74879	74878					0.016300048857146976
YYVWLQHTL	9	Unmodified	_YYVWLQHTL_					0	0	0		nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR	nc|ENSG00000003402|O15519-8|CFLAR	nc|ENSG00000003402|O15519-8|CFLAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	612.3375854492188	2	611.816399	1221.61824	0.58412	0.00035738	-1.0128	-0.00061967	-0.42872	-0.0002623	612.3174466575338	65.884	0.13383	65.973	65.921	66.055	0.088882					6	4	2	0	0	0	0.17277	1	16454	16454		27.629	16.805	1	150290			61234	303	35117	35118	74880	74880					0.016300048857146976
YYVWLQHTL	9	Unmodified	_YYVWLQHTL_					0	0	0		nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR	nc|ENSG00000003402|O15519-8|CFLAR	nc|ENSG00000003402|O15519-8|CFLAR	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	611.8162841796875	2	611.816399	1221.61824	0.39153	0.00023955	-0.23139	-0.00014157	0.16014	9.7977E-05	611.8161076149286	65.599	0.72101	65.588	65.372	66.093	-0.011337					58	25	4	0	0	0	0.00070271	1	16372	16372		126.57	89.491	1	682080			61235	303	35117	35118	74881	74881					0.016300048857146976
YYWGWIRQPP	10	Unmodified	_YYWGWIRQPP_					0	0	0		nc|ENSG00000211959|P01824|IGHV4-39	nc|ENSG00000211959|P01824|IGHV4-39	nc|ENSG00000211959|P01824|IGHV4-39	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	456.2585144042969	3	455.89614	1364.66659	0.051088	2.3291E-05	1.2667	0.00057746	1.3177	0.00060075	456.23100804441816	25.195	0.34863	25.195	25.011	25.359	0					18	11	2	0	0	0	0.3213	1	3925	3925		1.9064	0.1641	1	81734			61236	12938	35118	35119	74882	74882					-0.0011550147439720604
YYWGWIRQPP	10	Unmodified	_YYWGWIRQPP_					0	0	0		nc|ENSG00000211959|P01824|IGHV4-39	nc|ENSG00000211959|P01824|IGHV4-39	nc|ENSG00000211959|P01824|IGHV4-39	MULTI-MATCH	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3		3	455.89614	1364.66659	-0.28208	-0.0001286	1.7063	0.00077788	1.4242	0.00064928	455.89696021307844	25.248	0.41876	25.216	24.988	25.406	-0.03141	0.010782	0.00031968	NaN	1.9064	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78554			61237	12938	35118	35119							-0.0011550147439720604
YYWKGSGYSL	10	Unmodified	_YYWKGSGYSL_					0	0	0		nc|ENSG00000091879|O15123-2|ANGPT2;ENSG00000091879|ENST00000629816|ANGPT2;nc|ENSG00000091879|O15123|ANGPT2	nc|ENSG00000091879|O15123-2|ANGPT2	nc|ENSG00000091879|O15123-2|ANGPT2	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	612.8054809570312	2	612.290214	1222.56587	0.69856	0.00042772	-0.96577	-0.00059133	-0.26722	-0.00016361	612.2894303046972	60.576	0.26929	60.576	60.495	60.764	0					12	9	2	0	0	0	0.27059	1	14828	14828		24.021	0.87215	1	222240			61238	1411	35119	35120	74883	74883					-0.03650578247879821
YYWKRTTTL	9	Unmodified	_YYWKRTTTL_					0	0	0			REV__ENST00000265140.9_1_5:93954307-93964559:+|nuORF	REV__ENST00000265140.9_1_5:93954307-93964559:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2202453613281	3	411.220513	1230.63971	0.14942	6.1444E-05	-1.799	-0.00073979	-1.6496	-0.00067835	411.21973286308884	19.551	1.2378	19.495	18.989	20.227	-0.055693					108	43	3	0	0	0	0.26278	1	2179	2179		14.405	1.5494	1	904200	+		61239	19648	35120	35121	74884	74884					0.03361389914402935
YYWKRTTTL	9	Unmodified	_YYWKRTTTL_					0	0	0			REV__ENST00000265140.9_1_5:93954307-93964559:+|nuORF	REV__ENST00000265140.9_1_5:93954307-93964559:+|nuORF	MULTI-MATCH-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1		3	411.220513	1230.63971	-0.21207	-8.7208E-05	-1.494	-0.00061435	-1.706	-0.00070155	411.2198542523778	19.419	1.1212	19.419	18.952	20.073	0	-0.023821	0.00029515	NaN	14.405	113	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	791140	+		61240	19648	35120	35121							0.03361389914402935
YYWSSYFTL	9	Unmodified	_YYWSSYFTL_					0	0	0			REV__ENSG00000143797|ENST00000305997|MBOAT2	REV__ENSG00000143797|ENST00000305997|MBOAT2	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	411.2202453613281	3	410.521969	1228.54408	0.14749	6.0548E-05	3.0802	0.0012645	3.2277	0.001325	410.52330243288657	19.62	0.50506	19.564	19.283	19.788	-0.055693					20	17	2	0	0	0	0.25879	1	2270	2270		2.7352	0	1	34972	+		61241	16200	35121	35122	74885	74885					-0.06105382996474873
YYYEIWVTD	9	Unmodified	_YYYEIWVTD_					0	0	0			REV__ENSG00000108878|ENST00000226021|CACNG1	REV__ENSG00000108878|ENST00000226021|CACNG1	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.18878173828125	3	417.857128	1250.54956	0.33343	0.00013933	0.85767	0.00035838	1.1911	0.00049771	417.85753989242164	45.093	1.0676	45.161	44.867	45.934	0.068573					50	37	2	0	0	0	0.259	1	10064	10064		5.2969	0	1	215390	+		61242	14616	35122	35123	74886	74886					-0.06569704204684967
YYYGDSVEF	9	Unmodified	_YYYGDSVEF_					0	0	0		ENSG00000000971|ENST00000367429|CFH;nc|ENSG00000000971|P08603|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENSG00000000971|ENST00000367429|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	571.7220458984375	2	571.73748	1141.46041	0.44433	0.00025404	-0.9998	-0.00057162	-0.55547	-0.00031758	571.7369624313297	63.994	0.41447	63.994	63.771	64.185	0					21	14	2	0	0	0	0.019896	2	15860	15860;15908		64.236	31.931	1	174890			61243	286;10810	35123	35124	74887;74888	74887					-0.1046653916419018
YYYGDSVEF	9	Unmodified	_YYYGDSVEF_					0	0	0		ENSG00000000971|ENST00000367429|CFH;nc|ENSG00000000971|P08603|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENSG00000000971|ENST00000367429|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	571.7222290039062	2	571.73748	1141.46041	0.49967	0.00028568	-1.3244	-0.00075718	-0.82469	-0.00047151	571.7367868015137	63.816	0.32898	63.909	63.737	64.066	0.09288					21	11	2	0	0	0	0.015402	2	15811	15811;15859		71.134	38.828	1	165540			61244	286;10810	35123	35124	74889;74890	74889					-0.1046653916419018
YYYGDSVEF	9	Unmodified	_YYYGDSVEF_					0	0	0		ENSG00000000971|ENST00000367429|CFH;nc|ENSG00000000971|P08603|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENSG00000000971|ENST00000367429|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF	ENST00000466229.5_1_1:196648727-196709933:+|nuORF	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	571.7220458984375	2	571.73748	1141.46041	0.46465	0.00026566	-1.2404	-0.00070919	-0.77576	-0.00044353	571.7368474919537	63.97	0.35618	63.96	63.745	64.101	-0.0095329					19	12	2	0	0	0	0.027237	2	15858	15858;15905		61.357	35.958	1	149460			61245	286;10810	35123	35124	74891;74892	74891					-0.1046653916419018
YYYLHEWGT	9	Unmodified	_YYYLHEWGT_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4-7|ABCA13	REV__nc|ENSG00000179869|Q86UQ4-7|ABCA13	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	411.18560791015625	3	411.185468	1230.53457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.198	1	42.198	41.698	42.698	0								0	0	0	0.19325	1	9162	9162		17.113	0	1		+		61246	23110	35124	35125	74893	74893					-0.0714715128201533
YYYNFTRTV	9	Unmodified	_YYYNFTRTV_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	409.90606689453125	3	409.532868	1225.57677	-0.16349	-6.6953E-05	-3.4872	-0.0014281	-3.6507	-0.0014951	409.5313461346862	31.409	0.22083	31.451	31.322	31.543	0.042364					10	7	2	0	0	0	0.25441	1	5877	5877		10.151	2.6735	1	42264			61247	2814	35125	35126	74894	74894					-0.02699175873635795
YYYPEDPRF	9	Unmodified	_YYYPEDPRF_					0	0	0			REV__nc|ENSG00000075945|Q92845-4|KIFAP3	REV__nc|ENSG00000075945|Q92845-4|KIFAP3	MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.18896484375	3	417.188989	1248.54514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.896	1	45.896	45.396	46.396	0								0	0	0	0.20238	1	10296	10296		15.248	0	1		+		61248	13821	35126	35127	74895	74895					-0.06919168627587169
YYYPEDPRF	9	Unmodified	_YYYPEDPRF_					0	0	0			REV__nc|ENSG00000075945|Q92845-4|KIFAP3	REV__nc|ENSG00000075945|Q92845-4|KIFAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	417.22601318359375	3	417.188989	1248.54514	0.16043	6.6929E-05	-0.3664	-0.00015286	-0.20597	-8.593E-05	417.18878598211876	48.011	1.3334	48.011	47.934	49.267	0					67	47	2	0	0	0	0.25346	1	11148	11148		10.8	0	1	546400	+		61249	13821	35126	35127	74896	74896					-0.06919168627587169
YYYPEDPRF	9	Unmodified	_YYYPEDPRF_					0	0	0			REV__nc|ENSG00000075945|Q92845-4|KIFAP3	REV__nc|ENSG00000075945|Q92845-4|KIFAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	416.8880615234375	3	417.188989	1248.54514	0.32561	0.00013584	-0.92932	-0.0003877	-0.60371	-0.00025186	417.18847929519933	46.569	0.67044	46.621	46.202	46.872	0.052574					35	24	3	0	0	0	0.25949	1	10559	10559		4.897	0.70751	1	507230	+		61250	13821	35126	35127	74897	74897					-0.06919168627587169
YYYPEDPRF	9	Unmodified	_YYYPEDPRF_					0	0	0			REV__nc|ENSG00000075945|Q92845-4|KIFAP3	REV__nc|ENSG00000075945|Q92845-4|KIFAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	417.2188415527344	3	417.188989	1248.54514	0.24252	0.00010118	-0.35761	-0.00014919	-0.11509	-4.8014E-05	417.1888089354652	38.111	1.0181	38.202	37.983	39.001	0.090881					78	36	3	0	0	0	0.25123	1	7931	7931		8.1555	0	1	358870	+		61251	13821	35126	35127	74898	74898					-0.06919168627587169
YYYPEDPRF	9	Unmodified	_YYYPEDPRF_					0	0	0			REV__nc|ENSG00000075945|Q92845-4|KIFAP3	REV__nc|ENSG00000075945|Q92845-4|KIFAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	625.3248291015625	2	625.279846	1248.54514	0.10005	6.2557E-05	0.76514	0.00047843	0.86519	0.00054098	625.2803347291486	38.096	0.30447	38.186	38.042	38.347	0.090881					15	10	2	0	0	0	0.25612	1	7956	7956		12.532	0.89125	1	110180	+		61252	13821	35126	35127	74899	74899					-0.06919168627587169
YYYPEDPRF	9	Unmodified	_YYYPEDPRF_					0	0	0			REV__nc|ENSG00000075945|Q92845-4|KIFAP3	REV__nc|ENSG00000075945|Q92845-4|KIFAP3	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	417.21875	3	417.188989	1248.54514	0.15819	6.5994E-05	-0.36192	-0.00015099	-0.20373	-8.4993E-05	417.18882161575567	38.1	0.94058	38.197	37.953	38.893	0.097527					77	33	3	0	0	0	0.25612	1	7932	7932		8.1555	0	1	297220	+		61253	13821	35126	35127	74900	74900					-0.06919168627587169
YYYVGFAYL	9	Unmodified	_YYYVGFAYL_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	579.77880859375	2	579.778951	1157.54335	0.4555	0.00026409	0.23234	0.0001347	0.68784	0.00039879	579.7791304551415	86.156	0.82484	86.156	85.931	86.755	0					53	32	2	0	0	0	0.017826	2	22657	22657;22709		67.413	52.831	1	511570			61254	1536	35127	35128	74901;74902	74901					-0.029121776455212967
YYYVGFAYL	9	Unmodified	_YYYVGFAYL_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	579.7794189453125	2	579.778951	1157.54335	0.412	0.00023887	0.72136	0.00041823	1.1334	0.0006571	579.7790574070441	86.074	0.79614	86.158	85.755	86.551	0.084251					70	30	3	0	0	0	0.0096669	2	22626	22626;22678		79.935	65.353	1	456940			61255	1536	35127	35128	74903;74904	74903					-0.029121776455212967
YYYVGFAYL	9	Unmodified	_YYYVGFAYL_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	579.779296875	2	579.778951	1157.54335	0.45747	0.00026523	0.068096	3.9481E-05	0.52557	0.00030471	579.7789668788771	86.199	0.67348	86.19	85.962	86.636	-0.0090027					68	25	4	0	0	0	0.017826	3	22697	22649;22697;22744		67.413	46.542	1	628400			61256	1536	35127	35128	74905;74906;74907	74906					-0.029121776455212967
YYYVKNII	8	Unmodified	_YYYVKNII_					0	0	0		nc|ENSG00000158711|P28324-2|ELK4;ENSG00000158711|ENST00000357992|ELK4	nc|ENSG00000158711|P28324-2|ELK4	nc|ENSG00000158711|P28324-2|ELK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep2	2	538.8292236328125	2	538.294768	1074.57498	0.42422	0.00022835	0.28227	0.00015194	0.70649	0.0003803	538.2950661287869	91.419	0.23765	91.509	91.318	91.556	0.090668					27	20	2	0	0	0	0.31375	1	24212	24212		19.439	0	1	85653			61257	5370	35128	35129	74908	74908					0.04067815108442119
YYYVKNII	8	Unmodified	_YYYVKNII_					0	0	0		nc|ENSG00000158711|P28324-2|ELK4;ENSG00000158711|ENST00000357992|ELK4	nc|ENSG00000158711|P28324-2|ELK4	nc|ENSG00000158711|P28324-2|ELK4	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep3	3	538.7582397460938	2	538.294768	1074.57498	0.65556	0.00035289	0.12221	6.5788E-05	0.77778	0.00041867	538.2950291218281	92.807	0.27431	92.807	92.643	92.917	0.00046539					26	18	2	0	0	0	0.31375	1	24704	24704		26.341	3.605	1	93493			61258	5370	35128	35129	74909	74909					0.04067815108442119
YYYYYYFF	8	Unmodified	_YYYYYYFF_					0	0	0		Harlequin-int_dup238|chr6:111284651-111288187:-|7.344052110360552|0.2813414849289727|4.71|541.0|243|3|anti-sense	Harlequin-int_dup238|chr6:111284651-111288187:-|7.344052110360552|0.2813414849289727|4.71|541.0|243|3|anti-sense	Harlequin-int_dup238|chr6:111284651-111288187:-|7.344052110360552|0.2813414849289727|4.71|541.0|243|3|anti-sense	MULTI-SECPEP	220329_NHG_malignant_RCC_W6-32_17__orbitrap_DDA_Rep1	1	430.8882751464844	3	431.183064	1290.52736	-0.45442	-0.00019594	-0.17959	-7.7436E-05	-0.63401	-0.00027337	431.18322079485773	34.325	0.33569	34.325	34.164	34.5	0					20	11	2	0	0	0	0.34367	1	6726	6726		4.3292	0.45291	1	157230			61259	12366	35129	35130	74910	74910					-0.10627883882466449